Sender: LSF System <lsf@node1528>
Subject: Job 9894224: <iteration_180055> Done

Job <iteration_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1528>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055> was used as the working directory.
Started at Sat Oct  6 10:26:48 2012
Results reported at Sat Oct  6 10:26:52 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
echo starting
ls iteration*/exited 2>&1
return_code=$?
if [ ${return_code} -eq 0 ]; then
echo some scatter or gather jobs failed;
echo ${return_code} > exited;
exit 1;
fi
ls exited 2>&1
return_code=$?
if [ ${return_code} -eq 0 ]; then
echo previous iteration failed;
echo ${return_code} > exited;
exit 1;
fi
/xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/scatter-gather-iterator.py /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/iterative-scatter-gather.py --job-suffix 180055 --priority 65 cga /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/scatter-gather.xml /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
return_code=$?
if [ ${return_code} -ne 0 ]; then
echo iterator failed ${return_code};
echo ${return_code} > exited;
exit ${return_code};
fi
cat iteration1/jobSubmissions.txt >> jobSubmissions.txt
rm -f iteration1/jobSubmissions.txt
echo '*** Scatter Gather stdandard out:' 2>&1
cat iteration1/scatter-gather.out.txt 2>&1
rm -f iteration1/scatter-gather.out.txt 2>&1
echo '*** Scatter Gather stdandard err:' 2>&1
cat iteration1/scatter-gather.err.txt 2>&1
rm -f iteration1/scatter-gather.err.txt 2>&1
ls iteration1/sg-next-iteration.txt 2>&1
return_code=$?
if [ ${return_code} -eq 0 ]; then
rm -f iteration1/sg-next-iteration.txt
else
rm -f scatterGatherParameters.txt
rm -f programParameters.txt
mv iteration1/* /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055
rmdir iteration*
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :      1.14 sec.
    Max Memory :         3 MB
    Max Swap   :        39 MB

    Max Processes  :         1
    Max Threads    :         1

The output (if any) follows:

starting
ls: iteration*/exited: No such file or directory
ls: exited: No such file or directory
Running scatter-gather-iterator with the following args: /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/scatter-gather-iterator.py /xchip/tcga/gdac_prod/source/analysis_pipeline/scripts/iterative-scatter-gather.py --job-suffix 180055 --priority 65 cga /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/scatter-gather.xml /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
Finished in 1 iterations
*** Scatter Gather stdandard out:
Sender: LSF System <lsf@node1724>
Subject: Job 9894222: <gather_180055> Done

Job <gather_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1724>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1> was used as the working directory.
Started at Sat Oct  6 06:26:30 2012
Results reported at Sat Oct  6 10:26:46 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
ls scatter.*/exited 2>&1
return_code=$?
if [ ${return_code} -eq 0 ]; then
echo some scatter jobs failed;
echo ${return_code} > exited;
exit 1;
fi
if [ `ls -1 scatter.*/success | wc -l` -ne 200 ]; then
echo expected result files missing, try rerunning;
echo 1 > exited;
exit 1;
fi
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 0  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
echo gather failed;
echo ${return_code} > exited;
exit ${return_code};
fi
rm -f prepareResults.out
echo '*** Prepare stdandard out:' 2>&1
cat prepare.out 2>&1
rm -f prepare.out 2>&1
echo '*** Prepare stdandard err:' 2>&1
cat prepare.err 2>&1
rm -f prepare.err 2>&1
echo '*** Scatter stdandard out:' 2>&1
cat scatter.*/scatter.out 2>&1
rm -f scatter.*/scatter.out 2>&1
echo '*** Scatter stdandard err:' 2>&1
cat scatter.*/scatter.err 2>&1
rm -f scatter.*/scatter.err 2>&1
echo '*** Scatter retry log:'
head scatter.*.tries
echo
rm -f scatter.*.tries
rm -f scatter.*/success
rm -f scatter.*/java.opts
rmdir scatter.*
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  14036.70 sec.
    Max Memory :      5309 MB
    Max Swap   :      6294 MB

    Max Processes  :         9
    Max Threads    :        72

The output (if any) follows:

ls: scatter.*/exited: No such file or directory
fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
0
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 0
                            is_scatter: 0
                             is_gather: 1

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Saved ./COADREAD.mutation_filtering_report.txt
Writing coverage to ./COADREAD.per_exon.coverage.txt
HUGE STRUCT: SAVING CHUNK 1/5
  [save_struct] 69/233 70/233 71/233 72/233 73/233 74/233 75/233 76/233 77/233 78/233 79/233 80/233 81/233 82/233 83/233 84/233 85/233 86/233 87/233 88/233 89/233 90/233 91/233 92/233 93/233 94/233 95/233 96/233 97/233 98/233 99/233 100/233 101/233 102/233 103/233 104/233 105/233 106/233 107/233 108/233 109/233 110/233 111/233 112/233 113/233 114/233 115/233 116/233 117/233 118/233 119/233 120/233 121/233 122/233 123/233 124/233 125/233 126/233 127/233 128/233 129/233 130/233 131/233 132/233 133/233 134/233 135/233 136/233 137/233 138/233 139/233 140/233 141/233 142/233 143/233 144/233 145/233 146/233 147/233 148/233 149/233 150/233 151/233 152/233 153/233 154/233 155/233 156/233 157/233 158/233 159/233 160/233 161/233 162/233 163/233 164/233 165/233 166/233 167/233 168/233 169/233 170/233 171/233 172/233 173/233 174/233 175/233 176/233 177/233 178/233 179/233 180/233 181/233 182/233 183/233 184/233 185/233 186/233 187/233 188/233 189/233 190/233 191/233 192/233 193/233 194/233 195/233 196/233 197/233 198/233 199/233 200/233 201/233 202/233 203/233 204/233 205/233 206/233 207/233 208/233 209/233 210/233 211/233 212/233 213/233 214/233 215/233 216/233 217/233 218/233 219/233 220/233 221/233 222/233 223/233 224/233 225/233 226/233 227/233 228/233 229/233 230/233 231/233 232/233 233/233  [collapse]
HUGE STRUCT: SAVING CHUNK 2/5
  [save_struct] 73/233 74/233 75/233 76/233 77/233 78/233 79/233 80/233 81/233 82/233 83/233 84/233 85/233 86/233 87/233 88/233 89/233 90/233 91/233 92/233 93/233 94/233 95/233 96/233 97/233 98/233 99/233 100/233 101/233 102/233 103/233 104/233 105/233 106/233 107/233 108/233 109/233 110/233 111/233 112/233 113/233 114/233 115/233 116/233 117/233 118/233 119/233 120/233 121/233 122/233 123/233 124/233 125/233 126/233 127/233 128/233 129/233 130/233 131/233 132/233 133/233 134/233 135/233 136/233 137/233 138/233 139/233 140/233 141/233 142/233 143/233 144/233 145/233 146/233 147/233 148/233 149/233 150/233 151/233 152/233 153/233 154/233 155/233 156/233 157/233 158/233 159/233 160/233 161/233 162/233 163/233 164/233 165/233 166/233 167/233 168/233 169/233 170/233 171/233 172/233 173/233 174/233 175/233 176/233 177/233 178/233 179/233 180/233 181/233 182/233 183/233 184/233 185/233 186/233 187/233 188/233 189/233 190/233 191/233 192/233 193/233 194/233 195/233 196/233 197/233 198/233 199/233 200/233 201/233 202/233 203/233 204/233 205/233 206/233 207/233 208/233 209/233 210/233 211/233 212/233 213/233 214/233 215/233 216/233 217/233 218/233 219/233 220/233 221/233 222/233 223/233 224/233 225/233 226/233 227/233 228/233 229/233 230/233 231/233 232/233 233/233  [collapse]
HUGE STRUCT: SAVING CHUNK 3/5
  [save_struct] 68/233 69/233 70/233 71/233 72/233 73/233 74/233 75/233 76/233 77/233 78/233 79/233 80/233 81/233 82/233 83/233 84/233 85/233 86/233 87/233 88/233 89/233 90/233 91/233 92/233 93/233 94/233 95/233 96/233 97/233 98/233 99/233 100/233 101/233 102/233 103/233 104/233 105/233 106/233 107/233 108/233 109/233 110/233 111/233 112/233 113/233 114/233 115/233 116/233 117/233 118/233 119/233 120/233 121/233 122/233 123/233 124/233 125/233 126/233 127/233 128/233 129/233 130/233 131/233 132/233 133/233 134/233 135/233 136/233 137/233 138/233 139/233 140/233 141/233 142/233 143/233 144/233 145/233 146/233 147/233 148/233 149/233 150/233 151/233 152/233 153/233 154/233 155/233 156/233 157/233 158/233 159/233 160/233 161/233 162/233 163/233 164/233 165/233 166/233 167/233 168/233 169/233 170/233 171/233 172/233 173/233 174/233 175/233 176/233 177/233 178/233 179/233 180/233 181/233 182/233 183/233 184/233 185/233 186/233 187/233 188/233 189/233 190/233 191/233 192/233 193/233 194/233 195/233 196/233 197/233 198/233 199/233 200/233 201/233 202/233 203/233 204/233 205/233 206/233 207/233 208/233 209/233 210/233 211/233 212/233 213/233 214/233 215/233 216/233 217/233 218/233 219/233 220/233 221/233 222/233 223/233 224/233 225/233 226/233 227/233 228/233 229/233 230/233 231/233 232/233 233/233  [collapse]
HUGE STRUCT: SAVING CHUNK 4/5
  [save_struct] 71/233 72/233 73/233 74/233 75/233 76/233 77/233 78/233 79/233 80/233 81/233 82/233 83/233 84/233 85/233 86/233 87/233 88/233 89/233 90/233 91/233 92/233 93/233 94/233 95/233 96/233 97/233 98/233 99/233 100/233 101/233 102/233 103/233 104/233 105/233 106/233 107/233 108/233 109/233 110/233 111/233 112/233 113/233 114/233 115/233 116/233 117/233 118/233 119/233 120/233 121/233 122/233 123/233 124/233 125/233 126/233 127/233 128/233 129/233 130/233 131/233 132/233 133/233 134/233 135/233 136/233 137/233 138/233 139/233 140/233 141/233 142/233 143/233 144/233 145/233 146/233 147/233 148/233 149/233 150/233 151/233 152/233 153/233 154/233 155/233 156/233 157/233 158/233 159/233 160/233 161/233 162/233 163/233 164/233 165/233 166/233 167/233 168/233 169/233 170/233 171/233 172/233 173/233 174/233 175/233 176/233 177/233 178/233 179/233 180/233 181/233 182/233 183/233 184/233 185/233 186/233 187/233 188/233 189/233 190/233 191/233 192/233 193/233 194/233 195/233 196/233 197/233 198/233 199/233 200/233 201/233 202/233 203/233 204/233 205/233 206/233 207/233 208/233 209/233 210/233 211/233 212/233 213/233 214/233 215/233 216/233 217/233 218/233 219/233 220/233 221/233 222/233 223/233 224/233 225/233 226/233 227/233 228/233 229/233 230/233 231/233 232/233 233/233  [collapse]
HUGE STRUCT: SAVING CHUNK 5/5
  [save_struct] 205/233 206/233 207/233 208/233 209/233 210/233 211/233 212/233 213/233 214/233 215/233 216/233 217/233 218/233 219/233 220/233 221/233 222/233 223/233 224/233 225/233 226/233 227/233 228/233 229/233 230/233 231/233 232/233 233/233  [collapse]

nl =

     3

  [save_struct] 56/66 57/66 58/66 59/66 60/66 61/66 62/66 63/66 64/66 65/66 66/66  [collapse] [write]
Outputting gene_sample_coverage_table: ./COADREAD.per_gene.coverage.txt
  [save_struct] 148/232 149/232 150/232 151/232 152/232 153/232 154/232 155/232 156/232 157/232 158/232 159/232 160/232 161/232 162/232 163/232 164/232 165/232 166/232 167/232 168/232 169/232 170/232 171/232 172/232 173/232 174/232 175/232 176/232 177/232 178/232 179/232 180/232 181/232 182/232 183/232 184/232 185/232 186/232 187/232 188/232 189/232 190/232 191/232 192/232 193/232 194/232 195/232 196/232 197/232 198/232 199/232 200/232 201/232 202/232 203/232 204/232 205/232 206/232 207/232 208/232 209/232 210/232 211/232 212/232 213/232 214/232 215/232 216/232 217/232 218/232 219/232 220/232 221/232 222/232 223/232 224/232 225/232 226/232 227/232 228/232 229/232 230/232 231/232 232/232  [collapse] [write]
Outputting gene_sample_mutation_counts_table: ./COADREAD.per_gene.mutation_counts.txt
  [save_struct] 174/232 175/232 176/232 177/232 178/232 179/232 180/232 181/232 182/232 183/232 184/232 185/232 186/232 187/232 188/232 189/232 190/232 191/232 192/232 193/232 194/232 195/232 196/232 197/232 198/232 199/232 200/232 201/232 202/232 203/232 204/232 205/232 206/232 207/232 208/232 209/232 210/232 211/232 212/232 213/232 214/232 215/232 216/232 217/232 218/232 219/232 220/232 221/232 222/232 223/232 224/232 225/232 226/232 227/232 228/232 229/232 230/232 231/232 232/232  [collapse] [write]
Mutation breakdown by type

       De_novo_Start_InFrame: [21]
    De_novo_Start_OutOfFrame: [156]
             Frame_Shift_Del: [1293]
             Frame_Shift_Ins: [808]
                In_Frame_Del: [166]
                In_Frame_Ins: [27]
           Missense_Mutation: [54120]
           Nonsense_Mutation: [5060]
            Nonstop_Mutation: [36]
                Read-through: [10]
                      Silent: [19135]
                 Splice_Site: [187]
      Translation_Start_Site: [2]
                   ----TOTAL: [81021]
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Gather job: collecting partial results

Running MutSig 2:
Gather job: collecting partial results
Outputting significance table: ./COADREAD.sig_genes.txt
Done
Mapping 640 genesets from /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt to list of project genes.
100/640 200/640 300/640 400/640 500/640 600/640 
Total of 616 genesets contain at least one project gene.
Finding number of unique sites, unique patients: 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients
Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Calculating significance of each gene.
Using projection method.
In gene HISTONE_METHYLTRANSFERASE the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 9782    n = 9	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 10018   n = 11	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 86499   n = 18	mu =   3.17e-04
    COAD-AA-A00K	categ 6	N = 177255  n = 1	mu =   5.86e-07
In gene ACHPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 24679   n = 1	mu =   1.72e-07
9	ACHPATHWAY	1.922058e-10
In gene AKAPCENTROSOMEPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 27529   n = 1	mu =   8.55e-07
15	AKTPATHWAY	7.781109e-11
In gene ALKPATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 52170   n = 1	mu =   1.03e-07
    COAD-AA-3522	categ 6	N = 52170   n = 1	mu =   1.03e-07
    COAD-AA-3530	categ 6	N = 54977   n = 1	mu =   1.97e-07
    COAD-AA-3538	categ 6	N = 52170   n = 1	mu =   1.03e-07
    COAD-AA-3548	categ 6	N = 52170   n = 1	mu =   1.03e-07
    COAD-AA-3552	categ 6	N = 52170   n = 1	mu =   1.38e-07
    COAD-AA-3553	categ 6	N = 52170   n = 2	mu =   1.72e-07
    COAD-AA-3554	categ 6	N = 52170   n = 1	mu =   7.59e-07
    COAD-AA-3561	categ 6	N = 52170   n = 1	mu =   1.72e-07
    COAD-AA-3562	categ 6	N = 52170   n = 1	mu =   1.38e-07
    COAD-AA-3678	categ 6	N = 54977   n = 1	mu =   2.96e-07
    COAD-AA-3851	categ 6	N = 54977   n = 1	mu =   3.95e-07
    COAD-AA-3852	categ 6	N = 54977   n = 1	mu =   3.62e-07
    COAD-AA-3854	categ 6	N = 54977   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 54977   n = 1	mu =   8.55e-07
    COAD-AA-A00K	categ 6	N = 52170   n = 1	mu =   5.86e-07
    COAD-AA-A00W	categ 6	N = 52170   n = 1	mu =   1.38e-07
    COAD-AA-A00Z	categ 6	N = 52170   n = 1	mu =   3.45e-08
    COAD-AA-A017	categ 6	N = 54977   n = 1	mu =   2.63e-07
    COAD-AA-A01I	categ 6	N = 54977   n = 1	mu =   3.29e-07
    COAD-AA-A01Z	categ 6	N = 54977   n = 1	mu =   3.62e-07
    READ-AF-2692	categ 6	N = 52170   n = 1	mu =   1.72e-07
    READ-AF-3400	categ 6	N = 52170   n = 1	mu =   6.90e-08
    READ-AG-3580	categ 6	N = 52170   n = 1	mu =   1.72e-07
    READ-AG-3584	categ 6	N = 52170   n = 1	mu =   1.72e-07
    READ-AG-3594	categ 6	N = 52170   n = 1	mu =   1.72e-07
    READ-AG-3605	categ 6	N = 52170   n = 1	mu =   1.38e-07
    READ-AG-3727	categ 6	N = 54977   n = 1	mu =   2.96e-07
    READ-AG-3883	categ 6	N = 54977   n = 1	mu =   4.60e-07
    READ-AG-3890	categ 6	N = 54977   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 54977   n = 1	mu =   3.29e-07
    READ-AG-A008	categ 6	N = 52170   n = 1	mu =   1.03e-07
    READ-AG-A01L	categ 6	N = 55513   n = 1	mu =   3.23e-07
    COAD-AA-3519	categ 7	N = 52170   n = 1	mu =   3.45e-08
    COAD-AA-3531	categ 7	N = 52170   n = 1	mu =   3.45e-08
    COAD-AA-3837	categ 7	N = 54977   n = 1	mu =   3.29e-08
    COAD-AA-3860	categ 7	N = 54977   n = 1	mu =   3.29e-08
    COAD-AA-3975	categ 7	N = 54977   n = 1	mu =   3.29e-08
    COAD-AA-A00U	categ 7	N = 52170   n = 1	mu =   3.45e-08
    COAD-AA-A01S	categ 7	N = 54977   n = 1	mu =   3.29e-08
    COAD-AA-A02F	categ 7	N = 54977   n = 1	mu =   3.29e-08
    COAD-AA-A02J	categ 7	N = 54977   n = 1	mu =   3.29e-08
    READ-AG-3583	categ 7	N = 52170   n = 1	mu =   3.45e-08
    READ-AG-3587	categ 7	N = 52170   n = 1	mu =   3.45e-08
    READ-AG-3601	categ 7	N = 52170   n = 1	mu =   3.45e-08
    READ-AG-3909	categ 7	N = 54977   n = 1	mu =   3.29e-08
    READ-AG-4005	categ 7	N = 54977   n = 1	mu =   3.29e-08
    READ-AG-A020	categ 7	N = 54977   n = 1	mu =   3.29e-08
18	ALKPATHWAY	0
In gene AMINOACYL_TRNA_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-3538	categ 6	N = 47869   n = 1	mu =   1.03e-07
In gene AMIPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 34751   n = 1	mu =   3.29e-08
In gene APOPTOSIS the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5370    n = 9	mu =   1.44e-03
    COAD-A6-2674	categ 6	N = 81809   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 81809   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 81809   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 81809   n = 1	mu =   2.76e-07
    COAD-AA-3842	categ 6	N = 88137   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 88137   n = 1	mu =   8.55e-07
    COAD-AA-3986	categ 6	N = 88137   n = 1	mu =   2.96e-07
    COAD-AA-A004	categ 6	N = 88137   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 88137   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 81809   n = 1	mu =   1.72e-07
    READ-AG-3890	categ 6	N = 88137   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 88137   n = 1	mu =   3.29e-07
24	APOPTOSIS	1.332268e-15
In gene APOPTOSIS_GENMAPP the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 54149   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 54149   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 54149   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 54149   n = 1	mu =   2.76e-07
    COAD-AA-3842	categ 6	N = 57586   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 57586   n = 1	mu =   8.55e-07
    COAD-AA-3986	categ 6	N = 57586   n = 1	mu =   2.96e-07
    COAD-AA-A004	categ 6	N = 57586   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 57586   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 54149   n = 1	mu =   1.72e-07
    READ-AG-3890	categ 6	N = 57586   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 57586   n = 1	mu =   3.29e-07
25	APOPTOSIS_GENMAPP	6.661338e-16
In gene ARFPATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 29136   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 29136   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 29136   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 29136   n = 1	mu =   2.76e-07
    COAD-AA-3842	categ 6	N = 30548   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 30548   n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 30548   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 30548   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 29136   n = 1	mu =   1.72e-07
    READ-AG-3890	categ 6	N = 30548   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 30548   n = 1	mu =   3.29e-07
29	ARFPATHWAY	3.330669e-16
In gene ASBCELLPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 6054    n = 1	mu =   3.29e-08
In gene AT1RPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 51084   n = 1	mu =   1.72e-07
    COAD-AA-3986	categ 6	N = 51257   n = 1	mu =   2.96e-07
In gene ATMPATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 43253   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 43253   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 43253   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 43253   n = 1	mu =   2.76e-07
    COAD-AA-3678	categ 6	N = 45515   n = 1	mu =   2.96e-07
    COAD-AA-3842	categ 6	N = 45515   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 45515   n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 45515   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 45515   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 43253   n = 1	mu =   1.72e-07
    READ-AG-3727	categ 6	N = 45515   n = 1	mu =   2.96e-07
    READ-AG-3890	categ 6	N = 45515   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 45515   n = 1	mu =   3.29e-07
35	ATMPATHWAY	0
In gene ATRBRCAPATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 66324   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 66324   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 66324   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 66324   n = 1	mu =   2.76e-07
    COAD-AA-3678	categ 6	N = 66591   n = 1	mu =   2.96e-07
    COAD-AA-3842	categ 6	N = 66591   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 66591   n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 66591   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 66591   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 66324   n = 1	mu =   1.72e-07
    READ-AG-3727	categ 6	N = 66591   n = 1	mu =   2.96e-07
    READ-AG-3890	categ 6	N = 66591   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 66591   n = 1	mu =   3.29e-07
37	ATRBRCAPATHWAY	1.221245e-15
38	BADPATHWAY	2.705509e-09
In gene BBCELLPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 3654    n = 1	mu =   3.29e-08
In gene BILE_ACID_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 35464   n = 1	mu =   8.55e-07
In gene BIOPEPTIDESPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 62482   n = 1	mu =   1.72e-07
In gene BLOOD_GROUP_GLYCOLIPID_BIOSYNTHESIS_NEOLACTOSERIES the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 9552    n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 9552    n = 1	mu =   8.55e-07
In gene BLYMPHOCYTEPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 23158   n = 1	mu =   3.29e-08
In gene CALCINEURIN_NF_AT_SIGNALING the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 8408    n = 13	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 8680    n = 15	mu =   1.44e-03
    READ-AG-A008	categ 6	N = 131484  n = 1	mu =   1.03e-07
In gene CALCIUM_REGULATION_IN_CARDIAC_CELLS the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 20766   n = 11	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 20766   n = 8	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 20766   n = 18	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 20766   n = 16	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 21610   n = 39	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 134148  n = 25	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 138058  n = 48	mu =   3.17e-04
    COAD-AA-3980	categ 6	N = 291456  n = 1	mu =   8.55e-07
    READ-AG-3574	categ 6	N = 288880  n = 1	mu =   1.03e-07
In gene CCR5PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 20325   n = 1	mu =   1.72e-07
In gene CDC25PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3678	categ 6	N = 20839   n = 1	mu =   2.96e-07
    READ-AG-3727	categ 6	N = 20839   n = 1	mu =   2.96e-07
70	CDC42RACPATHWAY	4.098166e-12
In gene CDMACPATHWAY the following bins exceed PROBCAP:
    READ-AG-3727	categ 6	N = 23546   n = 1	mu =   2.96e-07
In gene CELL_CYCLE_KEGG the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 8383    n = 6	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 8601    n = 12	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 77016   n = 21	mu =   3.17e-04
    COAD-A6-2674	categ 6	N = 167984  n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 167984  n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 167984  n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 167984  n = 1	mu =   2.76e-07
    COAD-AA-3678	categ 6	N = 169379  n = 1	mu =   2.96e-07
    COAD-AA-3842	categ 6	N = 169379  n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 169379  n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 169379  n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 169379  n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 167984  n = 1	mu =   1.72e-07
    READ-AG-3727	categ 6	N = 169379  n = 1	mu =   2.96e-07
    READ-AG-3890	categ 6	N = 169379  n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 169379  n = 1	mu =   3.29e-07
74	CELL_CYCLE_KEGG	7.771561e-16
In gene CERAMIDEPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 31630   n = 1	mu =   2.96e-07
In gene CHEMICALPATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 41412   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 41412   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 41412   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 41412   n = 1	mu =   2.76e-07
    COAD-AA-3678	categ 6	N = 41900   n = 1	mu =   2.96e-07
    COAD-AA-3842	categ 6	N = 41900   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 41900   n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 41900   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 41900   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 41412   n = 1	mu =   1.72e-07
    READ-AG-3727	categ 6	N = 41900   n = 1	mu =   2.96e-07
    READ-AG-3890	categ 6	N = 41900   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 41900   n = 1	mu =   3.29e-07
78	CHEMICALPATHWAY	1.332268e-15
89	CREBPATHWAY	5.124075e-08
In gene CSKPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 34751   n = 1	mu =   3.29e-08
In gene CTLA4PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 19204   n = 1	mu =   3.29e-08
92	CTLA4PATHWAY	7.771561e-16
In gene CXCR4PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 41067   n = 1	mu =   1.72e-07
94	CXCR4PATHWAY	1.331635e-08
In gene CYSTEINE_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-3538	categ 6	N = 9686    n = 1	mu =   1.03e-07
105	ECMPATHWAY	4.706385e-07
106	EDG1PATHWAY	1.503412e-10
In gene EGFPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 56732   n = 1	mu =   2.96e-07
    READ-AG-3574	categ 6	N = 55704   n = 1	mu =   1.03e-07
108	EGFPATHWAY	4.485350e-07
In gene EIF4PATHWAY the following bins exceed PROBCAP:
    COAD-AA-A017	categ 6	N = 42565   n = 1	mu =   2.63e-07
112	EIF4PATHWAY	4.361728e-09
In gene EOSINOPHILSPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 4592    n = 1	mu =   3.29e-08
In gene ERBB3PATHWAY the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 15518   n = 1	mu =   4.60e-07
118	ERBB4PATHWAY	6.950121e-05
119	ERK5PATHWAY	1.114982e-08
In gene FASPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 64792   n = 1	mu =   2.96e-07
In gene FBW7PATHWAY the following bins exceed PROBCAP:
    READ-AG-3594	categ 6	N = 12760   n = 1	mu =   1.72e-07
127	FBW7PATHWAY	9.470202e-14
In gene FCER1PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 65358   n = 1	mu =   2.96e-07
128	FCER1PATHWAY	2.566992e-08
In gene FLUMAZENILPATHWAY the following bins exceed PROBCAP:
    COAD-AA-A017	categ 6	N = 11976   n = 1	mu =   2.63e-07
In gene G1_TO_S_CELL_CYCLE_REACTOME the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 6638    n = 8	mu =   1.44e-03
    COAD-A6-2674	categ 6	N = 107787  n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 107787  n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 107787  n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 107787  n = 1	mu =   2.76e-07
    COAD-AA-3678	categ 6	N = 117263  n = 1	mu =   2.96e-07
    COAD-AA-3842	categ 6	N = 117263  n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 117263  n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 117263  n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 117263  n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 107787  n = 1	mu =   1.72e-07
    READ-AG-3727	categ 6	N = 117263  n = 1	mu =   2.96e-07
    READ-AG-3890	categ 6	N = 117263  n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 117263  n = 1	mu =   3.29e-07
139	G1_TO_S_CELL_CYCLE_REACTOME	0
In gene G1PATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 44717   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 44717   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 44717   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 44717   n = 1	mu =   2.76e-07
    COAD-AA-3678	categ 6	N = 45393   n = 1	mu =   2.96e-07
    COAD-AA-3842	categ 6	N = 45393   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 45393   n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 45393   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 45393   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 44717   n = 1	mu =   1.72e-07
    READ-AG-3727	categ 6	N = 45393   n = 1	mu =   2.96e-07
    READ-AG-3890	categ 6	N = 45393   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 45393   n = 1	mu =   3.29e-07
140	G1PATHWAY	1.221245e-15
In gene G2PATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 64999   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 64999   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 64999   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 64999   n = 1	mu =   2.76e-07
    COAD-AA-3678	categ 6	N = 65142   n = 1	mu =   2.96e-07
    COAD-AA-3842	categ 6	N = 65142   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 65142   n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 65142   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 65142   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 64999   n = 1	mu =   1.72e-07
    READ-AG-3727	categ 6	N = 65142   n = 1	mu =   2.96e-07
    READ-AG-3890	categ 6	N = 65142   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 65142   n = 1	mu =   3.29e-07
141	G2PATHWAY	0
In gene G_PROTEIN_SIGNALING the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 11110   n = 11	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 11440   n = 15	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 80887   n = 25	mu =   3.17e-04
    READ-AG-A01L	categ 6	N = 181826  n = 1	mu =   3.23e-07
142	G_PROTEIN_SIGNALING	1.332268e-15
In gene GABAPATHWAY the following bins exceed PROBCAP:
    COAD-AA-A017	categ 6	N = 18142   n = 1	mu =   2.63e-07
In gene GANGLIOSIDE_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 8465    n = 1	mu =   2.96e-07
148	GCRPATHWAY	3.510349e-10
149	GHPATHWAY	2.007351e-05
In gene GLEEVECPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 42495   n = 1	mu =   2.96e-07
150	GLEEVECPATHWAY	2.380285e-07
In gene GLOBOSIDE_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 15441   n = 1	mu =   2.96e-07
In gene GLYCEROLIPID_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 73171   n = 1	mu =   8.55e-07
In gene GLYCEROPHOSPHOLIPID_METABOLISM the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5231    n = 8	mu =   1.44e-03
In gene GPCRDB_CLASS_A_RHODOPSIN_LIKE the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 13693   n = 12	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 13990   n = 22	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 87731   n = 30	mu =   3.17e-04
    COAD-AA-3554	categ 6	N = 167699  n = 1	mu =   7.59e-07
In gene GPCRDB_OTHER the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 7535    n = 8	mu =   1.44e-03
In gene GSK3PATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 43355   n = 1	mu =   1.03e-07
    COAD-AA-3522	categ 6	N = 43355   n = 1	mu =   1.03e-07
    COAD-AA-3530	categ 6	N = 46200   n = 1	mu =   1.97e-07
    COAD-AA-3538	categ 6	N = 43355   n = 1	mu =   1.03e-07
    COAD-AA-3548	categ 6	N = 43355   n = 1	mu =   1.03e-07
    COAD-AA-3552	categ 6	N = 43355   n = 1	mu =   1.38e-07
    COAD-AA-3553	categ 6	N = 43355   n = 1	mu =   1.72e-07
    COAD-AA-3561	categ 6	N = 43355   n = 1	mu =   1.72e-07
    COAD-AA-3562	categ 6	N = 43355   n = 1	mu =   1.38e-07
    COAD-AA-3678	categ 6	N = 46200   n = 1	mu =   2.96e-07
    COAD-AA-3851	categ 6	N = 46200   n = 1	mu =   3.95e-07
    COAD-AA-3852	categ 6	N = 46200   n = 1	mu =   3.62e-07
    COAD-AA-3854	categ 6	N = 46200   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 46200   n = 1	mu =   8.55e-07
    COAD-AA-A00K	categ 6	N = 43355   n = 1	mu =   5.86e-07
    COAD-AA-A00W	categ 6	N = 43355   n = 1	mu =   1.38e-07
    COAD-AA-A00Z	categ 6	N = 43355   n = 1	mu =   3.45e-08
    COAD-AA-A017	categ 6	N = 46200   n = 1	mu =   2.63e-07
    COAD-AA-A01I	categ 6	N = 46200   n = 1	mu =   3.29e-07
    COAD-AA-A01Z	categ 6	N = 46200   n = 1	mu =   3.62e-07
    READ-AF-2692	categ 6	N = 43355   n = 1	mu =   1.72e-07
    READ-AF-3400	categ 6	N = 43355   n = 1	mu =   6.90e-08
    READ-AG-3580	categ 6	N = 43355   n = 1	mu =   1.72e-07
    READ-AG-3584	categ 6	N = 43355   n = 1	mu =   1.72e-07
    READ-AG-3594	categ 6	N = 43355   n = 1	mu =   1.72e-07
    READ-AG-3605	categ 6	N = 43355   n = 1	mu =   1.38e-07
    READ-AG-3727	categ 6	N = 46200   n = 1	mu =   2.96e-07
    READ-AG-3883	categ 6	N = 46200   n = 1	mu =   4.60e-07
    READ-AG-3890	categ 6	N = 46200   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 46200   n = 1	mu =   3.29e-07
    READ-AG-A008	categ 6	N = 43355   n = 1	mu =   1.03e-07
    READ-AG-A01L	categ 6	N = 46614   n = 1	mu =   3.23e-07
    COAD-AA-3519	categ 7	N = 43355   n = 1	mu =   3.45e-08
    COAD-AA-3531	categ 7	N = 43355   n = 1	mu =   3.45e-08
    COAD-AA-3837	categ 7	N = 46200   n = 1	mu =   3.29e-08
    COAD-AA-3860	categ 7	N = 46200   n = 1	mu =   3.29e-08
    COAD-AA-3975	categ 7	N = 46200   n = 1	mu =   3.29e-08
    COAD-AA-A00U	categ 7	N = 43355   n = 1	mu =   3.45e-08
    COAD-AA-A01S	categ 7	N = 46200   n = 1	mu =   3.29e-08
    COAD-AA-A02F	categ 7	N = 46200   n = 1	mu =   3.29e-08
    COAD-AA-A02J	categ 7	N = 46200   n = 1	mu =   3.29e-08
    READ-AG-3583	categ 7	N = 43355   n = 1	mu =   3.45e-08
    READ-AG-3587	categ 7	N = 43355   n = 1	mu =   3.45e-08
    READ-AG-3601	categ 7	N = 43355   n = 1	mu =   3.45e-08
    READ-AG-3909	categ 7	N = 46200   n = 1	mu =   3.29e-08
    READ-AG-4005	categ 7	N = 46200   n = 1	mu =   3.29e-08
    READ-AG-A020	categ 7	N = 46200   n = 1	mu =   3.29e-08
171	GSK3PATHWAY	0
In gene HBXPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 12975   n = 1	mu =   1.72e-07
174	HCMVPATHWAY	3.187339e-12
In gene HIVNEFPATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5902    n = 11	mu =   1.44e-03
    READ-AG-3574	categ 6	N = 102262  n = 1	mu =   1.03e-07
In gene HSA00010_GLYCOLYSIS_AND_GLUCONEOGENESIS the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5524    n = 4	mu =   1.44e-03
In gene HSA00120_BILE_ACID_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-3678	categ 6	N = 48701   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 48701   n = 1	mu =   8.55e-07
In gene HSA00150_ANDROGEN_AND_ESTROGEN_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-A01I	categ 6	N = 73043   n = 1	mu =   3.29e-07
In gene HSA00190_OXIDATIVE_PHOSPHORYLATION the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5719    n = 9	mu =   1.44e-03
In gene HSA00230_PURINE_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 14854   n = 2	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 14854   n = 9	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 14854   n = 16	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 14854   n = 6	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 15173   n = 18	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 113016  n = 29	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 114581  n = 30	mu =   3.17e-04
    COAD-AA-3560	categ 6	N = 245728  n = 1	mu =   2.76e-07
    READ-AG-3574	categ 6	N = 245728  n = 1	mu =   1.03e-07
    READ-AG-3608	categ 6	N = 245728  n = 1	mu =   1.38e-07
In gene HSA00240_PYRIMIDINE_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 7321    n = 4	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 7486    n = 6	mu =   1.44e-03
    COAD-AA-3560	categ 6	N = 122845  n = 1	mu =   2.76e-07
    READ-AG-3574	categ 6	N = 122845  n = 1	mu =   1.03e-07
    READ-AG-3608	categ 6	N = 122845  n = 1	mu =   1.38e-07
In gene HSA00271_METHIONINE_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 31689   n = 1	mu =   2.96e-07
In gene HSA00272_CYSTEINE_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-3538	categ 6	N = 18386   n = 1	mu =   1.03e-07
In gene HSA00310_LYSINE_DEGRADATION the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5763    n = 7	mu =   1.44e-03
In gene HSA00350_TYROSINE_METABOLISM the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5259    n = 2	mu =   1.44e-03
In gene HSA00380_TRYPTOPHAN_METABOLISM the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5323    n = 5	mu =   1.44e-03
In gene HSA00500_STARCH_AND_SUCROSE_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 9588    n = 9	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 9734    n = 14	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 81928   n = 22	mu =   3.17e-04
    READ-AG-4015	categ 6	N = 186324  n = 1	mu =   3.29e-07
In gene HSA00510_N_GLYCAN_BIOSYNTHESIS the following bins exceed PROBCAP:
    READ-AG-3580	categ 6	N = 61427   n = 1	mu =   1.72e-07
In gene HSA00512_O_GLYCAN_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-3562	categ 6	N = 48133   n = 1	mu =   1.38e-07
In gene HSA00533_KERATAN_SULFATE_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 19254   n = 1	mu =   8.55e-07
In gene HSA00534_HEPARAN_SULFATE_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-3851	categ 6	N = 32148   n = 1	mu =   3.95e-07
In gene HSA00561_GLYCEROLIPID_METABOLISM the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5177    n = 6	mu =   1.44e-03
    COAD-AA-3980	categ 6	N = 89238   n = 1	mu =   8.55e-07
In gene HSA00562_INOSITOL_PHOSPHATE_METABOLISM the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 7445    n = 5	mu =   1.44e-03
In gene HSA00564_GLYCEROPHOSPHOLIPID_METABOLISM the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 6127    n = 10	mu =   1.44e-03
    READ-AG-A01L	categ 6	N = 103123  n = 1	mu =   3.23e-07
In gene HSA00565_ETHER_LIPID_METABOLISM the following bins exceed PROBCAP:
    READ-AG-A01L	categ 6	N = 36027   n = 1	mu =   3.23e-07
In gene HSA00602_GLYCOSPHINGOLIPID_BIOSYNTHESIS_NEO_LACTOSERIES the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 24982   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 24982   n = 1	mu =   8.55e-07
In gene HSA00603_GLYCOSPHINGOLIPID_BIOSYNTHESIS_GLOBOSERIES the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 16368   n = 1	mu =   2.96e-07
In gene HSA00604_GLYCOSPHINGOLIPID_BIOSYNTHESIS_GANGLIOSERIES the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 24946   n = 1	mu =   2.96e-07
In gene HSA00790_FOLATE_BIOSYNTHESIS the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5827    n = 8	mu =   1.44e-03
In gene HSA00970_AMINOACYL_TRNA_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-3538	categ 6	N = 76521   n = 1	mu =   1.03e-07
In gene HSA01030_GLYCAN_STRUCTURES_BIOSYNTHESIS_1 the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 11984   n = 14	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 12182   n = 16	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 78001   n = 15	mu =   3.17e-04
    COAD-AA-3562	categ 6	N = 158326  n = 1	mu =   1.38e-07
    COAD-AA-3851	categ 6	N = 170141  n = 1	mu =   3.95e-07
    COAD-AA-3980	categ 6	N = 170141  n = 1	mu =   8.55e-07
    READ-AG-3580	categ 6	N = 158326  n = 1	mu =   1.72e-07
In gene HSA01031_GLYCAN_STRUCTURES_BIOSYNTHESIS_2 the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5173    n = 8	mu =   1.44e-03
    COAD-AA-3842	categ 6	N = 75286   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 75286   n = 1	mu =   8.55e-07
In gene HSA01040_POLYUNSATURATED_FATTY_ACID_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-A01I	categ 6	N = 22679   n = 1	mu =   3.29e-07
In gene HSA01430_CELL_COMMUNICATION the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 24986   n = 12	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 24986   n = 19	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 24986   n = 21	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 24986   n = 17	mu =   8.59e-04
    READ-AG-3892	categ 2	N = 24986   n = 4	mu =   2.46e-04
    READ-AG-A002	categ 2	N = 25643   n = 32	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 187649  n = 27	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 191651  n = 48	mu =   3.17e-04
    READ-AG-A002	categ 4	N = 171437  n = 9	mu =   9.14e-05
    COAD-AA-3561	categ 6	N = 355109  n = 1	mu =   1.72e-07
    COAD-AA-3980	categ 6	N = 380924  n = 1	mu =   8.55e-07
    COAD-AA-A00K	categ 6	N = 355109  n = 1	mu =   5.86e-07
In gene HSA02010_ABC_TRANSPORTERS_GENERAL the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 9156    n = 11	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 9359    n = 22	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 82386   n = 35	mu =   3.17e-04
    COAD-AA-3522	categ 6	N = 170323  n = 1	mu =   1.03e-07
    COAD-AA-3529	categ 6	N = 170323  n = 1	mu =   2.41e-07
In gene HSA03050_PROTEASOME the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 24167   n = 1	mu =   7.59e-07
In gene HSA03320_PPAR_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5802    n = 8	mu =   1.44e-03
In gene HSA04010_MAPK_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3672	categ 2	N = 30499   n = 3	mu =   2.43e-04
    COAD-AA-3715	categ 2	N = 30499   n = 8	mu =   2.23e-04
    COAD-AA-3977	categ 2	N = 30499   n = 14	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 30499   n = 10	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 30499   n = 19	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 30499   n = 24	mu =   8.59e-04
    READ-AG-3892	categ 2	N = 30499   n = 6	mu =   2.46e-04
    READ-AG-A002	categ 2	N = 31631   n = 50	mu =   1.44e-03
    COAD-AA-3984	categ 3	N = 206595  n = 15	mu =   7.36e-05
    COAD-AA-A00N	categ 3	N = 206595  n = 12	mu =   7.55e-05
    COAD-AA-A010	categ 3	N = 206595  n = 30	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 212095  n = 44	mu =   3.17e-04
    READ-AG-A002	categ 4	N = 214621  n = 22	mu =   9.14e-05
    COAD-A6-2674	categ 6	N = 427955  n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 427955  n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 427955  n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 427955  n = 1	mu =   2.76e-07
    COAD-AA-3842	categ 6	N = 447549  n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 447549  n = 1	mu =   8.55e-07
    COAD-AA-3986	categ 6	N = 447549  n = 1	mu =   2.96e-07
    COAD-AA-A004	categ 6	N = 447549  n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 447549  n = 1	mu =   3.62e-07
    READ-AG-3574	categ 6	N = 427955  n = 1	mu =   1.03e-07
    READ-AG-3584	categ 6	N = 427955  n = 1	mu =   1.72e-07
    READ-AG-3594	categ 6	N = 427955  n = 1	mu =   1.72e-07
    READ-AG-3890	categ 6	N = 447549  n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 447549  n = 2	mu =   3.29e-07
    READ-AG-A01L	categ 6	N = 458347  n = 1	mu =   3.23e-07
306	HSA04010_MAPK_SIGNALING_PATHWAY	0
In gene HSA04012_ERBB_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 9776    n = 6	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 9994    n = 17	mu =   1.44e-03
    COAD-AA-3986	categ 6	N = 158255  n = 1	mu =   2.96e-07
    READ-AG-3727	categ 6	N = 158255  n = 1	mu =   2.96e-07
    READ-AG-3883	categ 6	N = 158255  n = 1	mu =   4.60e-07
307	HSA04012_ERBB_SIGNALING_PATHWAY	0
In gene HSA04020_CALCIUM_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3715	categ 2	N = 30230   n = 7	mu =   2.23e-04
    COAD-AA-3977	categ 2	N = 30230   n = 18	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 30230   n = 13	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 30230   n = 25	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 30230   n = 21	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 31348   n = 50	mu =   1.44e-03
    COAD-AA-3984	categ 3	N = 194128  n = 14	mu =   7.36e-05
    COAD-AA-A00N	categ 3	N = 194128  n = 14	mu =   7.55e-05
    COAD-AA-A010	categ 3	N = 194128  n = 38	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 199180  n = 54	mu =   3.17e-04
    READ-AG-A002	categ 4	N = 199262  n = 11	mu =   9.14e-05
    COAD-AA-3553	categ 6	N = 405026  n = 1	mu =   1.72e-07
In gene HSA04060_CYTOKINE_CYTOKINE_RECEPTOR_INTERACTION the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 13740   n = 8	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 13740   n = 9	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 13740   n = 18	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 13740   n = 17	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 14048   n = 20	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 124144  n = 34	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 126498  n = 46	mu =   3.17e-04
    COAD-AA-3554	categ 6	N = 254670  n = 1	mu =   7.59e-07
    READ-AG-A01L	categ 6	N = 270385  n = 2	mu =   3.23e-07
In gene HSA04070_PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM the following bins exceed PROBCAP:
    COAD-AA-A00N	categ 2	N = 11706   n = 8	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 11706   n = 16	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 11953   n = 21	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 88227   n = 23	mu =   3.17e-04
In gene HSA04080_NEUROACTIVE_LIGAND_RECEPTOR_INTERACTION the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 24109   n = 14	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 24109   n = 17	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 24109   n = 19	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 24109   n = 15	mu =   8.59e-04
    READ-AG-3892	categ 2	N = 24109   n = 5	mu =   2.46e-04
    READ-AG-A002	categ 2	N = 24575   n = 44	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 155873  n = 44	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 157590  n = 60	mu =   3.17e-04
    READ-AG-A002	categ 4	N = 161936  n = 18	mu =   9.14e-05
    COAD-AA-3554	categ 6	N = 315443  n = 1	mu =   7.59e-07
    COAD-AA-A017	categ 6	N = 340521  n = 1	mu =   2.63e-07
    COAD-AA-A01I	categ 6	N = 340521  n = 1	mu =   3.29e-07
    COAD-AA-A01Z	categ 6	N = 340521  n = 1	mu =   3.62e-07
311	HSA04080_NEUROACTIVE_LIGAND_RECEPTOR_INTERACTION	5.700088e-07
In gene HSA04110_CELL_CYCLE the following bins exceed PROBCAP:
    COAD-AA-3984	categ 2	N = 10014   n = 8	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 10014   n = 4	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 10014   n = 8	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 10154   n = 14	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 91443   n = 31	mu =   3.17e-04
    COAD-A6-2674	categ 6	N = 204125  n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 204125  n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 204125  n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 204125  n = 1	mu =   2.76e-07
    COAD-AA-3678	categ 6	N = 208611  n = 1	mu =   2.96e-07
    COAD-AA-3842	categ 6	N = 208611  n = 2	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 208611  n = 2	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 208611  n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 208611  n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 204125  n = 1	mu =   1.72e-07
    READ-AG-3727	categ 6	N = 208611  n = 2	mu =   2.96e-07
    READ-AG-3890	categ 6	N = 208611  n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 208611  n = 1	mu =   3.29e-07
312	HSA04110_CELL_CYCLE	0
In gene HSA04115_P53_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5301    n = 6	mu =   1.44e-03
    COAD-A6-2674	categ 6	N = 92243   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 92243   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 92243   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 92243   n = 1	mu =   2.76e-07
    COAD-AA-3678	categ 6	N = 99994   n = 1	mu =   2.96e-07
    COAD-AA-3842	categ 6	N = 99994   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 99994   n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 99994   n = 1	mu =   1.64e-07
    COAD-AA-A00F	categ 6	N = 92243   n = 1	mu =   3.45e-08
    COAD-AA-A01Z	categ 6	N = 99994   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 92243   n = 1	mu =   1.72e-07
    READ-AG-3727	categ 6	N = 99994   n = 1	mu =   2.96e-07
    READ-AG-3890	categ 6	N = 99994   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 99994   n = 1	mu =   3.29e-07
313	HSA04115_P53_SIGNALING_PATHWAY	0
In gene HSA04120_UBIQUITIN_MEDIATED_PROTEOLYSIS the following bins exceed PROBCAP:
    READ-AG-3594	categ 6	N = 60115   n = 1	mu =   1.72e-07
    READ-AG-3727	categ 6	N = 61702   n = 1	mu =   2.96e-07
In gene HSA04150_MTOR_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5121    n = 10	mu =   1.44e-03
    COAD-AA-3552	categ 6	N = 74874   n = 1	mu =   1.38e-07
    READ-AG-4015	categ 6	N = 82254   n = 1	mu =   3.29e-07
In gene HSA04210_APOPTOSIS the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 6833    n = 8	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 7061    n = 18	mu =   1.44e-03
    COAD-A6-2674	categ 6	N = 122921  n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 122921  n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 122921  n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 122921  n = 1	mu =   2.76e-07
    COAD-AA-3678	categ 6	N = 126836  n = 1	mu =   2.96e-07
    COAD-AA-3842	categ 6	N = 126836  n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 126836  n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 126836  n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 126836  n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 122921  n = 1	mu =   1.72e-07
    READ-AG-3727	categ 6	N = 126836  n = 1	mu =   2.96e-07
    READ-AG-3890	categ 6	N = 126836  n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 126836  n = 1	mu =   3.29e-07
318	HSA04210_APOPTOSIS	1.110223e-16
In gene HSA04310_WNT_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 18488   n = 10	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 18488   n = 9	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 18488   n = 11	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 18488   n = 15	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 18894   n = 18	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 114008  n = 27	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 116187  n = 30	mu =   3.17e-04
    COAD-A6-2674	categ 6	N = 229561  n = 2	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 229561  n = 1	mu =   2.07e-07
    COAD-AA-3522	categ 6	N = 229561  n = 1	mu =   1.03e-07
    COAD-AA-3530	categ 6	N = 250396  n = 1	mu =   1.97e-07
    COAD-AA-3538	categ 6	N = 229561  n = 1	mu =   1.03e-07
    COAD-AA-3548	categ 6	N = 229561  n = 1	mu =   1.03e-07
    COAD-AA-3552	categ 6	N = 229561  n = 1	mu =   1.38e-07
    COAD-AA-3553	categ 6	N = 229561  n = 2	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 229561  n = 1	mu =   2.76e-07
    COAD-AA-3561	categ 6	N = 229561  n = 1	mu =   1.72e-07
    COAD-AA-3562	categ 6	N = 229561  n = 1	mu =   1.38e-07
    COAD-AA-3678	categ 6	N = 250396  n = 1	mu =   2.96e-07
    COAD-AA-3842	categ 6	N = 250396  n = 2	mu =   2.96e-07
    COAD-AA-3851	categ 6	N = 250396  n = 1	mu =   3.95e-07
    COAD-AA-3852	categ 6	N = 250396  n = 1	mu =   3.62e-07
    COAD-AA-3854	categ 6	N = 250396  n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 250396  n = 2	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 250396  n = 1	mu =   1.64e-07
    COAD-AA-A00K	categ 6	N = 229561  n = 1	mu =   5.86e-07
    COAD-AA-A00W	categ 6	N = 229561  n = 1	mu =   1.38e-07
    COAD-AA-A00Z	categ 6	N = 229561  n = 1	mu =   3.45e-08
    COAD-AA-A017	categ 6	N = 250396  n = 1	mu =   2.63e-07
    COAD-AA-A01I	categ 6	N = 250396  n = 2	mu =   3.29e-07
    COAD-AA-A01Z	categ 6	N = 250396  n = 2	mu =   3.62e-07
    READ-AF-2692	categ 6	N = 229561  n = 2	mu =   1.72e-07
    READ-AF-3400	categ 6	N = 229561  n = 1	mu =   6.90e-08
    READ-AG-3580	categ 6	N = 229561  n = 1	mu =   1.72e-07
    READ-AG-3584	categ 6	N = 229561  n = 2	mu =   1.72e-07
    READ-AG-3594	categ 6	N = 229561  n = 2	mu =   1.72e-07
    READ-AG-3605	categ 6	N = 229561  n = 1	mu =   1.38e-07
    READ-AG-3727	categ 6	N = 250396  n = 1	mu =   2.96e-07
    READ-AG-3883	categ 6	N = 250396  n = 1	mu =   4.60e-07
    READ-AG-3890	categ 6	N = 250396  n = 2	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 250396  n = 2	mu =   3.29e-07
    READ-AG-A008	categ 6	N = 229561  n = 1	mu =   1.03e-07
    READ-AG-A01L	categ 6	N = 254783  n = 1	mu =   3.23e-07
    COAD-AA-3519	categ 7	N = 229561  n = 1	mu =   3.45e-08
    COAD-AA-3531	categ 7	N = 229561  n = 1	mu =   3.45e-08
    COAD-AA-3837	categ 7	N = 250396  n = 1	mu =   3.29e-08
    COAD-AA-3860	categ 7	N = 250396  n = 1	mu =   3.29e-08
    COAD-AA-3975	categ 7	N = 250396  n = 1	mu =   3.29e-08
    COAD-AA-A00U	categ 7	N = 229561  n = 1	mu =   3.45e-08
    COAD-AA-A01S	categ 7	N = 250396  n = 1	mu =   3.29e-08
    COAD-AA-A02F	categ 7	N = 250396  n = 1	mu =   3.29e-08
    COAD-AA-A02J	categ 7	N = 250396  n = 1	mu =   3.29e-08
    READ-AG-3583	categ 7	N = 229561  n = 1	mu =   3.45e-08
    READ-AG-3587	categ 7	N = 229561  n = 1	mu =   3.45e-08
    READ-AG-3601	categ 7	N = 229561  n = 1	mu =   3.45e-08
    READ-AG-3909	categ 7	N = 250396  n = 1	mu =   3.29e-08
    READ-AG-4005	categ 7	N = 250396  n = 1	mu =   3.29e-08
    READ-AG-A020	categ 7	N = 250396  n = 1	mu =   3.29e-08
319	HSA04310_WNT_SIGNALING_PATHWAY	0
In gene HSA04320_DORSO_VENTRAL_AXIS_FORMATION the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5071    n = 6	mu =   1.44e-03
320	HSA04320_DORSO_VENTRAL_AXIS_FORMATION	0
In gene HSA04330_NOTCH_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 8589    n = 4	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 8893    n = 5	mu =   1.44e-03
In gene HSA04340_HEDGEHOG_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 7906    n = 7	mu =   1.44e-03
    COAD-AA-3553	categ 6	N = 83763   n = 1	mu =   1.72e-07
In gene HSA04350_TGF_BETA_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 9291    n = 11	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 9436    n = 11	mu =   1.44e-03
    COAD-AA-3553	categ 6	N = 144794  n = 1	mu =   1.72e-07
    COAD-AA-3554	categ 6	N = 144794  n = 1	mu =   7.59e-07
    COAD-AA-3842	categ 6	N = 152254  n = 1	mu =   2.96e-07
    READ-AG-A01L	categ 6	N = 153660  n = 1	mu =   3.23e-07
323	HSA04350_TGF_BETA_SIGNALING_PATHWAY	8.372797e-05
In gene HSA04360_AXON_GUIDANCE the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 21006   n = 1	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 21006   n = 8	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 21006   n = 8	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 21006   n = 17	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 21440   n = 37	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 142938  n = 30	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 145344  n = 29	mu =   3.17e-04
    COAD-AA-3851	categ 6	N = 304543  n = 1	mu =   3.95e-07
    COAD-AA-A00K	categ 6	N = 282257  n = 1	mu =   5.86e-07
    READ-AF-2692	categ 6	N = 282257  n = 1	mu =   1.72e-07
    READ-AG-3574	categ 6	N = 282257  n = 1	mu =   1.03e-07
    READ-AG-3883	categ 6	N = 304543  n = 1	mu =   4.60e-07
324	HSA04360_AXON_GUIDANCE	1.665335e-15
In gene HSA04370_VEGF_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 7832    n = 16	mu =   1.44e-03
    READ-AG-3727	categ 6	N = 111781  n = 1	mu =   2.96e-07
325	HSA04370_VEGF_SIGNALING_PATHWAY	9.992007e-16
In gene HSA04510_FOCAL_ADHESION the following bins exceed PROBCAP:
    COAD-AA-3672	categ 2	N = 35696   n = 11	mu =   2.43e-04
    COAD-AA-3715	categ 2	N = 35696   n = 11	mu =   2.23e-04
    COAD-AA-3864	categ 2	N = 35696   n = 22	mu =   6.42e-04
    COAD-AA-3947	categ 2	N = 35696   n = 9	mu =   2.25e-04
    COAD-AA-3977	categ 2	N = 35696   n = 16	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 35696   n = 22	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 35696   n = 20	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 35696   n = 28	mu =   8.59e-04
    READ-AG-3892	categ 2	N = 35696   n = 5	mu =   2.46e-04
    READ-AG-A002	categ 2	N = 36447   n = 58	mu =   1.44e-03
    COAD-AA-3977	categ 3	N = 270547  n = 19	mu =   8.84e-05
    COAD-AA-3984	categ 3	N = 270547  n = 20	mu =   7.36e-05
    COAD-AA-A00N	categ 3	N = 270547  n = 14	mu =   7.55e-05
    COAD-AA-A010	categ 3	N = 270547  n = 48	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 274775  n = 70	mu =   3.17e-04
    READ-AG-A002	categ 4	N = 268182  n = 19	mu =   9.14e-05
    COAD-AA-3561	categ 6	N = 537360  n = 1	mu =   1.72e-07
    COAD-AA-A00K	categ 6	N = 537360  n = 1	mu =   5.86e-07
    READ-AG-3727	categ 6	N = 571158  n = 1	mu =   2.96e-07
In gene HSA04512_ECM_RECEPTOR_INTERACTION the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 22009   n = 10	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 22009   n = 18	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 22009   n = 15	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 22009   n = 15	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 22425   n = 29	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 171443  n = 29	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 173900  n = 46	mu =   3.17e-04
    READ-AG-A002	categ 4	N = 158196  n = 9	mu =   9.14e-05
    COAD-AA-3561	categ 6	N = 323568  n = 1	mu =   1.72e-07
    COAD-AA-A00K	categ 6	N = 323568  n = 1	mu =   5.86e-07
In gene HSA04514_CELL_ADHESION_MOLECULES the following bins exceed PROBCAP:
    COAD-AA-3984	categ 2	N = 14701   n = 9	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 14701   n = 8	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 14701   n = 21	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 14953   n = 25	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 106463  n = 20	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 107873  n = 43	mu =   3.17e-04
    COAD-AA-A00K	categ 6	N = 207931  n = 1	mu =   5.86e-07
    READ-AG-3883	categ 6	N = 229090  n = 2	mu =   4.60e-07
    READ-AG-A008	categ 6	N = 207931  n = 1	mu =   1.03e-07
    COAD-AA-3844	categ 7	N = 229090  n = 1	mu =   3.29e-08
In gene HSA04520_ADHERENS_JUNCTION the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 10886   n = 12	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 11232   n = 17	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 84614   n = 21	mu =   3.17e-04
    COAD-AA-3842	categ 6	N = 181265  n = 1	mu =   2.96e-07
    COAD-AA-A01I	categ 6	N = 181265  n = 1	mu =   3.29e-07
    READ-AF-2692	categ 6	N = 179025  n = 1	mu =   1.72e-07
    READ-AG-A01L	categ 6	N = 185304  n = 1	mu =   3.23e-07
329	HSA04520_ADHERENS_JUNCTION	4.969920e-06
In gene HSA04530_TIGHT_JUNCTION the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 18945   n = 14	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 18945   n = 13	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 18945   n = 14	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 18945   n = 18	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 19426   n = 31	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 135545  n = 19	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 137929  n = 37	mu =   3.17e-04
    COAD-AA-3548	categ 6	N = 287628  n = 1	mu =   1.03e-07
    COAD-AA-A00K	categ 6	N = 287628  n = 1	mu =   5.86e-07
330	HSA04530_TIGHT_JUNCTION	7.411946e-10
In gene HSA04540_GAP_JUNCTION the following bins exceed PROBCAP:
    COAD-AA-3984	categ 2	N = 13867   n = 7	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 13867   n = 10	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 13867   n = 8	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 14235   n = 25	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 93500   n = 29	mu =   3.17e-04
331	HSA04540_GAP_JUNCTION	0
In gene HSA04610_COMPLEMENT_AND_COAGULATION_CASCADES the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 6588    n = 1	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 6675    n = 14	mu =   1.44e-03
In gene HSA04612_ANTIGEN_PROCESSING_AND_PRESENTATION the following bins exceed PROBCAP:
    COAD-AA-3529	categ 6	N = 59262   n = 1	mu =   2.41e-07
    COAD-AA-3844	categ 7	N = 71336   n = 1	mu =   3.29e-08
In gene HSA04620_TOLL_LIKE_RECEPTOR_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 6997    n = 4	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 7076    n = 18	mu =   1.44e-03
    COAD-AA-3986	categ 6	N = 137250  n = 1	mu =   2.96e-07
335	HSA04620_TOLL_LIKE_RECEPTOR_SIGNALING_PATHWAY	4.465961e-05
In gene HSA04630_JAK_STAT_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3984	categ 2	N = 10662   n = 7	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 10662   n = 17	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 10662   n = 11	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 10858   n = 16	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 98916   n = 23	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 99997   n = 36	mu =   3.17e-04
    READ-AG-A01L	categ 6	N = 217757  n = 1	mu =   3.23e-07
In gene HSA04640_HEMATOPOIETIC_CELL_LINEAGE the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 6572    n = 12	mu =   1.44e-03
    COAD-AA-3844	categ 7	N = 122918  n = 1	mu =   3.29e-08
In gene HSA04650_NATURAL_KILLER_CELL_MEDIATED_CYTOTOXICITY the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 10340   n = 7	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 10631   n = 21	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 80872   n = 18	mu =   3.17e-04
    COAD-AA-3553	categ 6	N = 163790  n = 1	mu =   1.72e-07
    READ-AG-3727	categ 6	N = 173080  n = 1	mu =   2.96e-07
338	HSA04650_NATURAL_KILLER_CELL_MEDIATED_CYTOTOXICITY	6.661338e-16
In gene HSA04660_T_CELL_RECEPTOR_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 8952    n = 12	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 9165    n = 23	mu =   1.44e-03
339	HSA04660_T_CELL_RECEPTOR_SIGNALING_PATHWAY	2.220446e-16
In gene HSA04662_B_CELL_RECEPTOR_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 7135    n = 16	mu =   1.44e-03
340	HSA04662_B_CELL_RECEPTOR_SIGNALING_PATHWAY	3.330669e-16
In gene HSA04664_FC_EPSILON_RI_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 6784    n = 15	mu =   1.44e-03
    COAD-AA-3986	categ 6	N = 110277  n = 1	mu =   2.96e-07
341	HSA04664_FC_EPSILON_RI_SIGNALING_PATHWAY	0
In gene HSA04670_LEUKOCYTE_TRANSENDOTHELIAL_MIGRATION the following bins exceed PROBCAP:
    COAD-AA-A00N	categ 2	N = 12262   n = 5	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 12262   n = 11	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 12592   n = 23	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 88822   n = 26	mu =   3.17e-04
    COAD-AA-3553	categ 6	N = 183095  n = 1	mu =   1.72e-07
In gene HSA04720_LONG_TERM_POTENTIATION the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 9822    n = 7	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 10138   n = 18	mu =   1.44e-03
    READ-AG-4015	categ 6	N = 155184  n = 1	mu =   3.29e-07
344	HSA04720_LONG_TERM_POTENTIATION	6.661338e-16
In gene HSA04730_LONG_TERM_DEPRESSION the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 11602   n = 9	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 11976   n = 21	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 78791   n = 22	mu =   3.17e-04
345	HSA04730_LONG_TERM_DEPRESSION	1.776357e-15
In gene HSA04742_TASTE_TRANSDUCTION the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 6142    n = 11	mu =   1.44e-03
In gene HSA04810_REGULATION_OF_ACTIN_CYTOSKELETON the following bins exceed PROBCAP:
    COAD-AA-3715	categ 2	N = 26764   n = 9	mu =   2.23e-04
    COAD-AA-3977	categ 2	N = 26764   n = 8	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 26764   n = 19	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 26764   n = 21	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 26764   n = 22	mu =   8.59e-04
    READ-AG-3892	categ 2	N = 26764   n = 3	mu =   2.46e-04
    READ-AG-A002	categ 2	N = 27640   n = 45	mu =   1.44e-03
    COAD-AA-3984	categ 3	N = 195329  n = 12	mu =   7.36e-05
    COAD-AA-A00N	categ 3	N = 195329  n = 10	mu =   7.55e-05
    COAD-AA-A010	categ 3	N = 195329  n = 31	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 199722  n = 58	mu =   3.17e-04
    READ-AG-A002	categ 4	N = 208842  n = 11	mu =   9.14e-05
    COAD-A6-2674	categ 6	N = 414991  n = 1	mu =   1.03e-07
    COAD-AA-3522	categ 6	N = 414991  n = 1	mu =   1.03e-07
    COAD-AA-3530	categ 6	N = 427410  n = 1	mu =   1.97e-07
    COAD-AA-3538	categ 6	N = 414991  n = 1	mu =   1.03e-07
    COAD-AA-3548	categ 6	N = 414991  n = 1	mu =   1.03e-07
    COAD-AA-3552	categ 6	N = 414991  n = 1	mu =   1.38e-07
    COAD-AA-3553	categ 6	N = 414991  n = 1	mu =   1.72e-07
    COAD-AA-3561	categ 6	N = 414991  n = 1	mu =   1.72e-07
    COAD-AA-3562	categ 6	N = 414991  n = 1	mu =   1.38e-07
    COAD-AA-3678	categ 6	N = 427410  n = 1	mu =   2.96e-07
    COAD-AA-3851	categ 6	N = 427410  n = 1	mu =   3.95e-07
    COAD-AA-3852	categ 6	N = 427410  n = 1	mu =   3.62e-07
    COAD-AA-3854	categ 6	N = 427410  n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 427410  n = 1	mu =   8.55e-07
    COAD-AA-A00K	categ 6	N = 414991  n = 1	mu =   5.86e-07
    COAD-AA-A00W	categ 6	N = 414991  n = 1	mu =   1.38e-07
    COAD-AA-A00Z	categ 6	N = 414991  n = 1	mu =   3.45e-08
    COAD-AA-A017	categ 6	N = 427410  n = 1	mu =   2.63e-07
    COAD-AA-A01I	categ 6	N = 427410  n = 1	mu =   3.29e-07
    COAD-AA-A01Z	categ 6	N = 427410  n = 1	mu =   3.62e-07
    READ-AF-2692	categ 6	N = 414991  n = 1	mu =   1.72e-07
    READ-AF-3400	categ 6	N = 414991  n = 1	mu =   6.90e-08
    READ-AG-3580	categ 6	N = 414991  n = 1	mu =   1.72e-07
    READ-AG-3584	categ 6	N = 414991  n = 1	mu =   1.72e-07
    READ-AG-3594	categ 6	N = 414991  n = 1	mu =   1.72e-07
    READ-AG-3605	categ 6	N = 414991  n = 1	mu =   1.38e-07
    READ-AG-3727	categ 6	N = 427410  n = 1	mu =   2.96e-07
    READ-AG-3883	categ 6	N = 427410  n = 1	mu =   4.60e-07
    READ-AG-3890	categ 6	N = 427410  n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 427410  n = 1	mu =   3.29e-07
    READ-AG-A008	categ 6	N = 414991  n = 1	mu =   1.03e-07
    READ-AG-A01L	categ 6	N = 436204  n = 2	mu =   3.23e-07
    COAD-AA-3519	categ 7	N = 414991  n = 1	mu =   3.45e-08
    COAD-AA-3531	categ 7	N = 414991  n = 1	mu =   3.45e-08
    COAD-AA-3837	categ 7	N = 427410  n = 1	mu =   3.29e-08
    COAD-AA-3860	categ 7	N = 427410  n = 1	mu =   3.29e-08
    COAD-AA-3975	categ 7	N = 427410  n = 1	mu =   3.29e-08
    COAD-AA-A00U	categ 7	N = 414991  n = 1	mu =   3.45e-08
    COAD-AA-A01S	categ 7	N = 427410  n = 1	mu =   3.29e-08
    COAD-AA-A02F	categ 7	N = 427410  n = 1	mu =   3.29e-08
    COAD-AA-A02J	categ 7	N = 427410  n = 1	mu =   3.29e-08
    READ-AG-3583	categ 7	N = 414991  n = 1	mu =   3.45e-08
    READ-AG-3587	categ 7	N = 414991  n = 1	mu =   3.45e-08
    READ-AG-3601	categ 7	N = 414991  n = 1	mu =   3.45e-08
    READ-AG-3909	categ 7	N = 427410  n = 1	mu =   3.29e-08
    READ-AG-4005	categ 7	N = 427410  n = 1	mu =   3.29e-08
    READ-AG-A020	categ 7	N = 427410  n = 1	mu =   3.29e-08
348	HSA04810_REGULATION_OF_ACTIN_CYTOSKELETON	6.661338e-16
In gene HSA04910_INSULIN_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 17132   n = 6	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 17132   n = 7	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 17132   n = 11	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 17132   n = 13	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 17537   n = 30	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 113195  n = 14	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 114899  n = 22	mu =   3.17e-04
    READ-AG-3727	categ 6	N = 247540  n = 1	mu =   2.96e-07
349	HSA04910_INSULIN_SIGNALING_PATHWAY	0
In gene HSA04912_GNRH_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3984	categ 2	N = 13212   n = 5	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 13212   n = 6	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 13212   n = 9	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 13631   n = 21	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 92708   n = 19	mu =   3.17e-04
    COAD-AA-3553	categ 6	N = 193139  n = 1	mu =   1.72e-07
    COAD-AA-3986	categ 6	N = 197818  n = 1	mu =   2.96e-07
    READ-AG-A01L	categ 6	N = 202278  n = 1	mu =   3.23e-07
350	HSA04912_GNRH_SIGNALING_PATHWAY	0
In gene HSA04916_MELANOGENESIS the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 13980   n = 10	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 14345   n = 12	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 80079   n = 25	mu =   3.17e-04
    COAD-AA-A01I	categ 6	N = 167950  n = 1	mu =   3.29e-07
    READ-AF-2692	categ 6	N = 156478  n = 1	mu =   1.72e-07
351	HSA04916_MELANOGENESIS	1.110223e-16
In gene HSA04920_ADIPOCYTOKINE_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 8372    n = 6	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 8502    n = 13	mu =   1.44e-03
In gene HSA05120_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 6099    n = 12	mu =   1.44e-03
    COAD-AA-3986	categ 6	N = 107252  n = 1	mu =   2.96e-07
    COAD-AA-A00W	categ 6	N = 104838  n = 1	mu =   1.38e-07
In gene HSA05130_PATHOGENIC_ESCHERICHIA_COLI_INFECTION_EHEC the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5439    n = 11	mu =   1.44e-03
    COAD-AA-3548	categ 6	N = 73718   n = 1	mu =   1.03e-07
    COAD-AA-A00K	categ 6	N = 73718   n = 1	mu =   5.86e-07
In gene HSA05131_PATHOGENIC_ESCHERICHIA_COLI_INFECTION_EPEC the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5439    n = 11	mu =   1.44e-03
    COAD-AA-3548	categ 6	N = 73718   n = 1	mu =   1.03e-07
    COAD-AA-A00K	categ 6	N = 73718   n = 1	mu =   5.86e-07
362	IGF1MTORPATHWAY	1.521621e-09
In gene IGF1PATHWAY the following bins exceed PROBCAP:
    READ-AG-3574	categ 6	N = 35828   n = 1	mu =   1.03e-07
363	IGF1PATHWAY	8.772697e-09
364	IGF1RPATHWAY	5.295875e-11
In gene IL5PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 8084    n = 1	mu =   3.29e-08
In gene IL7PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 41821   n = 1	mu =   1.72e-07
377	IL7PATHWAY	1.145661e-07
In gene INFLAMPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 20207   n = 1	mu =   3.29e-08
In gene INSULINPATHWAY the following bins exceed PROBCAP:
    READ-AG-3574	categ 6	N = 36923   n = 1	mu =   1.03e-07
381	INSULINPATHWAY	7.584840e-08
In gene INTEGRIN_MEDIATED_CELL_ADHESION_KEGG the following bins exceed PROBCAP:
    COAD-AA-3984	categ 2	N = 12761   n = 9	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 12761   n = 3	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 12761   n = 10	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 13173   n = 19	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 98663   n = 32	mu =   3.17e-04
In gene IONPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 9984    n = 1	mu =   1.72e-07
In gene KERATAN_SULFATE_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 12181   n = 1	mu =   8.55e-07
In gene KERATINOCYTEPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 75182   n = 1	mu =   2.96e-07
395	LONGEVITYPATHWAY	1.375677e-12
In gene MAPKPATHWAY the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 8937    n = 7	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 9212    n = 12	mu =   1.44e-03
    COAD-AA-3986	categ 6	N = 149089  n = 1	mu =   2.96e-07
In gene METHIONINE_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 26590   n = 1	mu =   2.96e-07
In gene METPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 68165   n = 1	mu =   1.72e-07
    READ-AG-3574	categ 6	N = 68165   n = 1	mu =   1.03e-07
406	METPATHWAY	3.825278e-05
In gene MRNA_PROCESSING_REACTOME the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 9450    n = 8	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 9662    n = 8	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 72369   n = 15	mu =   3.17e-04
    COAD-AA-3854	categ 6	N = 160321  n = 1	mu =   2.96e-07
    COAD-AA-A01Z	categ 6	N = 160321  n = 1	mu =   3.62e-07
In gene MTORPATHWAY the following bins exceed PROBCAP:
    COAD-AA-A017	categ 6	N = 42099   n = 1	mu =   2.63e-07
417	MTORPATHWAY	1.583052e-06
In gene MYOSINPATHWAY the following bins exceed PROBCAP:
    READ-AG-A01L	categ 6	N = 31642   n = 1	mu =   3.23e-07
In gene NDKDYNAMINPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 33995   n = 1	mu =   8.55e-07
In gene NFATPATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5037    n = 11	mu =   1.44e-03
426	NGFPATHWAY	5.653907e-10
In gene NKCELLSPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 27988   n = 1	mu =   1.72e-07
429	NKCELLSPATHWAY	1.560196e-12
In gene NOTCHPATHWAY the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 14940   n = 1	mu =   4.60e-07
In gene NUCLEAR_RECEPTORS the following bins exceed PROBCAP:
    COAD-AA-3562	categ 6	N = 59319   n = 1	mu =   1.38e-07
In gene O_GLYCAN_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-3562	categ 6	N = 21506   n = 1	mu =   1.38e-07
In gene OVARIAN_INFERTILITY_GENES the following bins exceed PROBCAP:
    COAD-AA-3678	categ 6	N = 53295   n = 1	mu =   2.96e-07
    READ-AG-3727	categ 6	N = 53295   n = 1	mu =   2.96e-07
In gene P38MAPKPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 56160   n = 1	mu =   2.96e-07
In gene P53HYPOXIAPATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 29577   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 29577   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 29577   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 29577   n = 1	mu =   2.76e-07
    COAD-AA-3678	categ 6	N = 31264   n = 1	mu =   2.96e-07
    COAD-AA-3842	categ 6	N = 31264   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 31264   n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 31264   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 31264   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 29577   n = 1	mu =   1.72e-07
    READ-AG-3727	categ 6	N = 31264   n = 1	mu =   2.96e-07
    READ-AG-3890	categ 6	N = 31264   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 31264   n = 1	mu =   3.29e-07
447	P53HYPOXIAPATHWAY	1.110223e-16
In gene P53PATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 27365   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 27365   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 27365   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 27365   n = 1	mu =   2.76e-07
    COAD-AA-3678	categ 6	N = 27818   n = 1	mu =   2.96e-07
    COAD-AA-3842	categ 6	N = 27818   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 27818   n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 27818   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 27818   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 27365   n = 1	mu =   1.72e-07
    READ-AG-3727	categ 6	N = 27818   n = 1	mu =   2.96e-07
    READ-AG-3890	categ 6	N = 27818   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 27818   n = 1	mu =   3.29e-07
448	P53PATHWAY	2.442491e-15
In gene PAR1PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 38026   n = 1	mu =   1.72e-07
    READ-AG-A01L	categ 6	N = 39927   n = 1	mu =   3.23e-07
450	PAR1PATHWAY	1.755609e-10
In gene PDGFPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 52553   n = 1	mu =   2.96e-07
    READ-AG-3574	categ 6	N = 51972   n = 1	mu =   1.03e-07
452	PDGFPATHWAY	7.241312e-08
In gene PEPTIDE_GPCRS the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5497    n = 13	mu =   1.44e-03
    COAD-AA-3554	categ 6	N = 73651   n = 1	mu =   7.59e-07
In gene PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 10612   n = 15	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 10881   n = 18	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 79104   n = 20	mu =   3.17e-04
    COAD-AA-3554	categ 6	N = 168361  n = 1	mu =   7.59e-07
    READ-AG-A01L	categ 6	N = 178404  n = 1	mu =   3.23e-07
In gene PITX2PATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 48074   n = 1	mu =   1.03e-07
    COAD-AA-3522	categ 6	N = 48074   n = 1	mu =   1.03e-07
    COAD-AA-3530	categ 6	N = 49496   n = 1	mu =   1.97e-07
    COAD-AA-3538	categ 6	N = 48074   n = 1	mu =   1.03e-07
    COAD-AA-3548	categ 6	N = 48074   n = 1	mu =   1.03e-07
    COAD-AA-3552	categ 6	N = 48074   n = 1	mu =   1.38e-07
    COAD-AA-3553	categ 6	N = 48074   n = 1	mu =   1.72e-07
    COAD-AA-3561	categ 6	N = 48074   n = 1	mu =   1.72e-07
    COAD-AA-3562	categ 6	N = 48074   n = 1	mu =   1.38e-07
    COAD-AA-3678	categ 6	N = 49496   n = 2	mu =   2.96e-07
    COAD-AA-3851	categ 6	N = 49496   n = 1	mu =   3.95e-07
    COAD-AA-3852	categ 6	N = 49496   n = 1	mu =   3.62e-07
    COAD-AA-3854	categ 6	N = 49496   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 49496   n = 1	mu =   8.55e-07
    COAD-AA-A00K	categ 6	N = 48074   n = 1	mu =   5.86e-07
    COAD-AA-A00W	categ 6	N = 48074   n = 1	mu =   1.38e-07
    COAD-AA-A00Z	categ 6	N = 48074   n = 1	mu =   3.45e-08
    COAD-AA-A017	categ 6	N = 49496   n = 1	mu =   2.63e-07
    COAD-AA-A01I	categ 6	N = 49496   n = 1	mu =   3.29e-07
    COAD-AA-A01Z	categ 6	N = 49496   n = 1	mu =   3.62e-07
    READ-AF-2692	categ 6	N = 48074   n = 1	mu =   1.72e-07
    READ-AF-3400	categ 6	N = 48074   n = 1	mu =   6.90e-08
    READ-AG-3580	categ 6	N = 48074   n = 1	mu =   1.72e-07
    READ-AG-3584	categ 6	N = 48074   n = 1	mu =   1.72e-07
    READ-AG-3594	categ 6	N = 48074   n = 1	mu =   1.72e-07
    READ-AG-3605	categ 6	N = 48074   n = 1	mu =   1.38e-07
    READ-AG-3727	categ 6	N = 49496   n = 1	mu =   2.96e-07
    READ-AG-3883	categ 6	N = 49496   n = 1	mu =   4.60e-07
    READ-AG-3890	categ 6	N = 49496   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 49496   n = 1	mu =   3.29e-07
    READ-AG-A008	categ 6	N = 48074   n = 1	mu =   1.03e-07
    READ-AG-A01L	categ 6	N = 49964   n = 1	mu =   3.23e-07
    COAD-AA-3519	categ 7	N = 48074   n = 1	mu =   3.45e-08
    COAD-AA-3531	categ 7	N = 48074   n = 1	mu =   3.45e-08
    COAD-AA-3837	categ 7	N = 49496   n = 1	mu =   3.29e-08
    COAD-AA-3860	categ 7	N = 49496   n = 1	mu =   3.29e-08
    COAD-AA-3975	categ 7	N = 49496   n = 1	mu =   3.29e-08
    COAD-AA-A00U	categ 7	N = 48074   n = 1	mu =   3.45e-08
    COAD-AA-A01S	categ 7	N = 49496   n = 1	mu =   3.29e-08
    COAD-AA-A02F	categ 7	N = 49496   n = 1	mu =   3.29e-08
    COAD-AA-A02J	categ 7	N = 49496   n = 1	mu =   3.29e-08
    READ-AG-3583	categ 7	N = 48074   n = 1	mu =   3.45e-08
    READ-AG-3587	categ 7	N = 48074   n = 1	mu =   3.45e-08
    READ-AG-3601	categ 7	N = 48074   n = 1	mu =   3.45e-08
    READ-AG-3909	categ 7	N = 49496   n = 1	mu =   3.29e-08
    READ-AG-4005	categ 7	N = 49496   n = 1	mu =   3.29e-08
    READ-AG-A020	categ 7	N = 49496   n = 1	mu =   3.29e-08
463	PITX2PATHWAY	7.771561e-16
467	PLCPATHWAY	3.197442e-14
In gene PLK3PATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 23883   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 23883   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 23883   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 23883   n = 1	mu =   2.76e-07
    COAD-AA-3678	categ 6	N = 24122   n = 1	mu =   2.96e-07
    COAD-AA-3842	categ 6	N = 24122   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 24122   n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 24122   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 24122   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 23883   n = 1	mu =   1.72e-07
    READ-AG-3727	categ 6	N = 24122   n = 1	mu =   2.96e-07
    READ-AG-3890	categ 6	N = 24122   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 24122   n = 1	mu =   3.29e-07
468	PLK3PATHWAY	0
In gene PMLPATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 27299   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 27299   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 27299   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 27299   n = 1	mu =   2.76e-07
    COAD-AA-3842	categ 6	N = 29411   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 29411   n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 29411   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 29411   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 27299   n = 1	mu =   1.72e-07
    READ-AG-3890	categ 6	N = 29411   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 29411   n = 1	mu =   3.29e-07
469	PMLPATHWAY	0
In gene PPARAPATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5735    n = 10	mu =   1.44e-03
In gene PROTEASOME the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 12018   n = 1	mu =   7.59e-07
In gene PROTEASOMEPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 19772   n = 1	mu =   7.59e-07
In gene PS1PATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 26182   n = 1	mu =   1.03e-07
    COAD-AA-3522	categ 6	N = 26182   n = 1	mu =   1.03e-07
    COAD-AA-3530	categ 6	N = 32631   n = 1	mu =   1.97e-07
    COAD-AA-3538	categ 6	N = 26182   n = 1	mu =   1.03e-07
    COAD-AA-3548	categ 6	N = 26182   n = 1	mu =   1.03e-07
    COAD-AA-3552	categ 6	N = 26182   n = 1	mu =   1.38e-07
    COAD-AA-3553	categ 6	N = 26182   n = 1	mu =   1.72e-07
    COAD-AA-3561	categ 6	N = 26182   n = 1	mu =   1.72e-07
    COAD-AA-3562	categ 6	N = 26182   n = 1	mu =   1.38e-07
    COAD-AA-3678	categ 6	N = 32631   n = 1	mu =   2.96e-07
    COAD-AA-3851	categ 6	N = 32631   n = 1	mu =   3.95e-07
    COAD-AA-3852	categ 6	N = 32631   n = 1	mu =   3.62e-07
    COAD-AA-3854	categ 6	N = 32631   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 32631   n = 1	mu =   8.55e-07
    COAD-AA-A00K	categ 6	N = 26182   n = 1	mu =   5.86e-07
    COAD-AA-A00W	categ 6	N = 26182   n = 1	mu =   1.38e-07
    COAD-AA-A00Z	categ 6	N = 26182   n = 1	mu =   3.45e-08
    COAD-AA-A017	categ 6	N = 32631   n = 1	mu =   2.63e-07
    COAD-AA-A01I	categ 6	N = 32631   n = 1	mu =   3.29e-07
    COAD-AA-A01Z	categ 6	N = 32631   n = 1	mu =   3.62e-07
    READ-AF-2692	categ 6	N = 26182   n = 1	mu =   1.72e-07
    READ-AF-3400	categ 6	N = 26182   n = 1	mu =   6.90e-08
    READ-AG-3580	categ 6	N = 26182   n = 1	mu =   1.72e-07
    READ-AG-3584	categ 6	N = 26182   n = 1	mu =   1.72e-07
    READ-AG-3594	categ 6	N = 26182   n = 1	mu =   1.72e-07
    READ-AG-3605	categ 6	N = 26182   n = 1	mu =   1.38e-07
    READ-AG-3727	categ 6	N = 32631   n = 1	mu =   2.96e-07
    READ-AG-3883	categ 6	N = 32631   n = 1	mu =   4.60e-07
    READ-AG-3890	categ 6	N = 32631   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 32631   n = 1	mu =   3.29e-07
    READ-AG-A008	categ 6	N = 26182   n = 1	mu =   1.03e-07
    READ-AG-A01L	categ 6	N = 32891   n = 1	mu =   3.23e-07
    COAD-AA-3519	categ 7	N = 26182   n = 1	mu =   3.45e-08
    COAD-AA-3531	categ 7	N = 26182   n = 1	mu =   3.45e-08
    COAD-AA-3837	categ 7	N = 32631   n = 1	mu =   3.29e-08
    COAD-AA-3860	categ 7	N = 32631   n = 1	mu =   3.29e-08
    COAD-AA-3975	categ 7	N = 32631   n = 1	mu =   3.29e-08
    COAD-AA-A00U	categ 7	N = 26182   n = 1	mu =   3.45e-08
    COAD-AA-A01S	categ 7	N = 32631   n = 1	mu =   3.29e-08
    COAD-AA-A02F	categ 7	N = 32631   n = 1	mu =   3.29e-08
    COAD-AA-A02J	categ 7	N = 32631   n = 1	mu =   3.29e-08
    READ-AG-3583	categ 7	N = 26182   n = 1	mu =   3.45e-08
    READ-AG-3587	categ 7	N = 26182   n = 1	mu =   3.45e-08
    READ-AG-3601	categ 7	N = 26182   n = 1	mu =   3.45e-08
    READ-AG-3909	categ 7	N = 32631   n = 1	mu =   3.29e-08
    READ-AG-4005	categ 7	N = 32631   n = 1	mu =   3.29e-08
    READ-AG-A020	categ 7	N = 32631   n = 1	mu =   3.29e-08
478	PS1PATHWAY	9.992007e-16
In gene PTDINSPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 39114   n = 1	mu =   8.55e-07
481	PTENPATHWAY	6.393297e-11
In gene PURINE_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-3984	categ 2	N = 12113   n = 7	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 12113   n = 12	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 12113   n = 4	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 12365   n = 17	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 90972   n = 21	mu =   3.17e-04
In gene PYK2PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 41459   n = 1	mu =   1.72e-07
    COAD-AA-3986	categ 6	N = 43790   n = 1	mu =   2.96e-07
In gene PYRIMIDINE_METABOLISM the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5716    n = 4	mu =   1.44e-03
487	RAC1PATHWAY	1.223487e-08
488	RACCYCDPATHWAY	9.218945e-09
492	RASPATHWAY	5.267843e-10
In gene RBPATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 26860   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 26860   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 26860   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 26860   n = 1	mu =   2.76e-07
    COAD-AA-3678	categ 6	N = 26740   n = 1	mu =   2.96e-07
    COAD-AA-3842	categ 6	N = 26740   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 26740   n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 26740   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 26740   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 26860   n = 1	mu =   1.72e-07
    READ-AG-3727	categ 6	N = 26740   n = 1	mu =   2.96e-07
    READ-AG-3890	categ 6	N = 26740   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 26740   n = 1	mu =   3.29e-07
493	RBPATHWAY	1.110223e-15
In gene REELINPATHWAY the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 21098   n = 1	mu =   4.60e-07
In gene RHOPATHWAY the following bins exceed PROBCAP:
    COAD-A6-2678	categ 6	N = 69099   n = 1	mu =   2.07e-07
    READ-AG-A01L	categ 6	N = 72410   n = 1	mu =   3.23e-07
In gene RIBOSOMAL_PROTEINS the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5015    n = 4	mu =   1.44e-03
    READ-AG-4015	categ 6	N = 80875   n = 1	mu =   3.29e-07
In gene RNAPATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 15296   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 15296   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 15296   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 15296   n = 1	mu =   2.76e-07
    COAD-AA-3842	categ 6	N = 15391   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 15391   n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 15391   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 15391   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 15296   n = 1	mu =   1.72e-07
    READ-AG-3890	categ 6	N = 15391   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 15391   n = 1	mu =   3.29e-07
503	RNAPATHWAY	1.110223e-16
In gene S1PPATHWAY the following bins exceed PROBCAP:
    COAD-AA-A00W	categ 6	N = 16332   n = 1	mu =   1.38e-07
In gene SA_BONE_MORPHOGENETIC the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 9173    n = 1	mu =   7.59e-07
In gene SA_G1_AND_S_PHASES the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 11780   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 11780   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 11780   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 11780   n = 1	mu =   2.76e-07
    COAD-AA-3842	categ 6	N = 12260   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 12260   n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 12260   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 12260   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 11780   n = 1	mu =   1.72e-07
    READ-AG-3890	categ 6	N = 12260   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 12260   n = 1	mu =   3.29e-07
510	SA_G1_AND_S_PHASES	0
In gene SA_PTEN_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 30080   n = 1	mu =   1.72e-07
514	SA_PTEN_PATHWAY	5.563141e-07
516	SA_TRKA_RECEPTOR	1.028296e-07
In gene SIG_BCR_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 7222    n = 16	mu =   1.44e-03
In gene SIG_CD40PATHWAYMAP the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 52560   n = 1	mu =   2.96e-07
523	SIG_CD40PATHWAYMAP	4.425605e-10
In gene SIG_CHEMOTAXIS the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 6333    n = 19	mu =   1.44e-03
525	SIG_IL4RECEPTOR_IN_B_LYPHOCYTES	8.203952e-05
In gene SIG_INSULIN_RECEPTOR_PATHWAY_IN_CARDIAC_MYOCYTES the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5712    n = 18	mu =   1.44e-03
In gene SIG_PIP3_SIGNALING_IN_B_LYMPHOCYTES the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5213    n = 11	mu =   1.44e-03
In gene SIG_PIP3_SIGNALING_IN_CARDIAC_MYOCTES the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 7463    n = 9	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 7598    n = 12	mu =   1.44e-03
In gene SMOOTH_MUSCLE_CONTRACTION the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 18675   n = 10	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 18675   n = 5	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 18675   n = 15	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 18675   n = 22	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 19248   n = 31	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 124857  n = 21	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 127829  n = 45	mu =   3.17e-04
    COAD-AA-3980	categ 6	N = 267744  n = 1	mu =   8.55e-07
In gene SPRYPATHWAY the following bins exceed PROBCAP:
    READ-AG-3574	categ 6	N = 36690   n = 1	mu =   1.03e-07
In gene ST_ADRENERGIC the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5148    n = 12	mu =   1.44e-03
    COAD-A6-2674	categ 6	N = 79881   n = 1	mu =   1.03e-07
    COAD-AA-3522	categ 6	N = 79881   n = 1	mu =   1.03e-07
    COAD-AA-3530	categ 6	N = 82198   n = 1	mu =   1.97e-07
    COAD-AA-3538	categ 6	N = 79881   n = 1	mu =   1.03e-07
    COAD-AA-3548	categ 6	N = 79881   n = 1	mu =   1.03e-07
    COAD-AA-3552	categ 6	N = 79881   n = 1	mu =   1.38e-07
    COAD-AA-3553	categ 6	N = 79881   n = 1	mu =   1.72e-07
    COAD-AA-3561	categ 6	N = 79881   n = 1	mu =   1.72e-07
    COAD-AA-3562	categ 6	N = 79881   n = 1	mu =   1.38e-07
    COAD-AA-3678	categ 6	N = 82198   n = 1	mu =   2.96e-07
    COAD-AA-3851	categ 6	N = 82198   n = 1	mu =   3.95e-07
    COAD-AA-3852	categ 6	N = 82198   n = 1	mu =   3.62e-07
    COAD-AA-3854	categ 6	N = 82198   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 82198   n = 1	mu =   8.55e-07
    COAD-AA-A00K	categ 6	N = 79881   n = 1	mu =   5.86e-07
    COAD-AA-A00W	categ 6	N = 79881   n = 1	mu =   1.38e-07
    COAD-AA-A00Z	categ 6	N = 79881   n = 1	mu =   3.45e-08
    COAD-AA-A017	categ 6	N = 82198   n = 1	mu =   2.63e-07
    COAD-AA-A01I	categ 6	N = 82198   n = 1	mu =   3.29e-07
    COAD-AA-A01Z	categ 6	N = 82198   n = 1	mu =   3.62e-07
    READ-AF-2692	categ 6	N = 79881   n = 1	mu =   1.72e-07
    READ-AF-3400	categ 6	N = 79881   n = 1	mu =   6.90e-08
    READ-AG-3580	categ 6	N = 79881   n = 1	mu =   1.72e-07
    READ-AG-3584	categ 6	N = 79881   n = 1	mu =   1.72e-07
    READ-AG-3594	categ 6	N = 79881   n = 1	mu =   1.72e-07
    READ-AG-3605	categ 6	N = 79881   n = 1	mu =   1.38e-07
    READ-AG-3727	categ 6	N = 82198   n = 1	mu =   2.96e-07
    READ-AG-3883	categ 6	N = 82198   n = 1	mu =   4.60e-07
    READ-AG-3890	categ 6	N = 82198   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 82198   n = 1	mu =   3.29e-07
    READ-AG-A008	categ 6	N = 79881   n = 1	mu =   1.03e-07
    READ-AG-A01L	categ 6	N = 83336   n = 1	mu =   3.23e-07
    COAD-AA-3519	categ 7	N = 79881   n = 1	mu =   3.45e-08
    COAD-AA-3531	categ 7	N = 79881   n = 1	mu =   3.45e-08
    COAD-AA-3837	categ 7	N = 82198   n = 1	mu =   3.29e-08
    COAD-AA-3860	categ 7	N = 82198   n = 1	mu =   3.29e-08
    COAD-AA-3975	categ 7	N = 82198   n = 1	mu =   3.29e-08
    COAD-AA-A00U	categ 7	N = 79881   n = 1	mu =   3.45e-08
    COAD-AA-A01S	categ 7	N = 82198   n = 1	mu =   3.29e-08
    COAD-AA-A02F	categ 7	N = 82198   n = 1	mu =   3.29e-08
    COAD-AA-A02J	categ 7	N = 82198   n = 1	mu =   3.29e-08
    READ-AG-3583	categ 7	N = 79881   n = 1	mu =   3.45e-08
    READ-AG-3587	categ 7	N = 79881   n = 1	mu =   3.45e-08
    READ-AG-3601	categ 7	N = 79881   n = 1	mu =   3.45e-08
    READ-AG-3909	categ 7	N = 82198   n = 1	mu =   3.29e-08
    READ-AG-4005	categ 7	N = 82198   n = 1	mu =   3.29e-08
    READ-AG-A020	categ 7	N = 82198   n = 1	mu =   3.29e-08
538	ST_ADRENERGIC	2.220446e-16
In gene ST_B_CELL_ANTIGEN_RECEPTOR the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5423    n = 11	mu =   1.44e-03
In gene ST_DICTYOSTELIUM_DISCOIDEUM_CAMP_CHEMOTAXIS_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 75457   n = 1	mu =   8.55e-07
In gene ST_DIFFERENTIATION_PATHWAY_IN_PC12_CELLS the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5523    n = 7	mu =   1.44e-03
    COAD-AA-3986	categ 6	N = 80129   n = 1	mu =   2.96e-07
541	ST_DIFFERENTIATION_PATHWAY_IN_PC12_CELLS	6.438050e-11
In gene ST_FAS_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 6512    n = 9	mu =   1.44e-03
    COAD-A6-2674	categ 6	N = 105364  n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 105364  n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 105364  n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 105364  n = 1	mu =   2.76e-07
    COAD-AA-3842	categ 6	N = 114066  n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 114066  n = 1	mu =   8.55e-07
    COAD-AA-3986	categ 6	N = 114066  n = 1	mu =   2.96e-07
    COAD-AA-A004	categ 6	N = 114066  n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 114066  n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 105364  n = 1	mu =   1.72e-07
    READ-AG-3890	categ 6	N = 114066  n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 114066  n = 1	mu =   3.29e-07
543	ST_FAS_SIGNALING_PATHWAY	0
In gene ST_G_ALPHA_I_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5695    n = 14	mu =   1.44e-03
545	ST_G_ALPHA_S_PATHWAY	1.135924e-05
In gene ST_GA12_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A01L	categ 6	N = 43204   n = 1	mu =   3.23e-07
In gene ST_GA13_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 75166   n = 1	mu =   2.96e-07
    READ-AG-A01L	categ 6	N = 76050   n = 1	mu =   3.23e-07
In gene ST_GAQ_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A01L	categ 6	N = 70502   n = 1	mu =   3.23e-07
In gene ST_GRANULE_CELL_SURVIVAL_PATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 38761   n = 1	mu =   1.03e-07
    COAD-AA-3522	categ 6	N = 38761   n = 1	mu =   1.03e-07
    COAD-AA-3530	categ 6	N = 44191   n = 1	mu =   1.97e-07
    COAD-AA-3538	categ 6	N = 38761   n = 1	mu =   1.03e-07
    COAD-AA-3548	categ 6	N = 38761   n = 1	mu =   1.03e-07
    COAD-AA-3552	categ 6	N = 38761   n = 1	mu =   1.38e-07
    COAD-AA-3553	categ 6	N = 38761   n = 1	mu =   1.72e-07
    COAD-AA-3561	categ 6	N = 38761   n = 1	mu =   1.72e-07
    COAD-AA-3562	categ 6	N = 38761   n = 1	mu =   1.38e-07
    COAD-AA-3678	categ 6	N = 44191   n = 1	mu =   2.96e-07
    COAD-AA-3851	categ 6	N = 44191   n = 1	mu =   3.95e-07
    COAD-AA-3852	categ 6	N = 44191   n = 1	mu =   3.62e-07
    COAD-AA-3854	categ 6	N = 44191   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 44191   n = 1	mu =   8.55e-07
    COAD-AA-3986	categ 6	N = 44191   n = 1	mu =   2.96e-07
    COAD-AA-A00K	categ 6	N = 38761   n = 1	mu =   5.86e-07
    COAD-AA-A00W	categ 6	N = 38761   n = 1	mu =   1.38e-07
    COAD-AA-A00Z	categ 6	N = 38761   n = 1	mu =   3.45e-08
    COAD-AA-A017	categ 6	N = 44191   n = 1	mu =   2.63e-07
    COAD-AA-A01I	categ 6	N = 44191   n = 1	mu =   3.29e-07
    COAD-AA-A01Z	categ 6	N = 44191   n = 1	mu =   3.62e-07
    READ-AF-2692	categ 6	N = 38761   n = 1	mu =   1.72e-07
    READ-AF-3400	categ 6	N = 38761   n = 1	mu =   6.90e-08
    READ-AG-3580	categ 6	N = 38761   n = 1	mu =   1.72e-07
    READ-AG-3584	categ 6	N = 38761   n = 1	mu =   1.72e-07
    READ-AG-3594	categ 6	N = 38761   n = 1	mu =   1.72e-07
    READ-AG-3605	categ 6	N = 38761   n = 1	mu =   1.38e-07
    READ-AG-3727	categ 6	N = 44191   n = 1	mu =   2.96e-07
    READ-AG-3883	categ 6	N = 44191   n = 1	mu =   4.60e-07
    READ-AG-3890	categ 6	N = 44191   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 44191   n = 1	mu =   3.29e-07
    READ-AG-A008	categ 6	N = 38761   n = 1	mu =   1.03e-07
    READ-AG-A01L	categ 6	N = 44385   n = 1	mu =   3.23e-07
    COAD-AA-3519	categ 7	N = 38761   n = 1	mu =   3.45e-08
    COAD-AA-3531	categ 7	N = 38761   n = 1	mu =   3.45e-08
    COAD-AA-3837	categ 7	N = 44191   n = 1	mu =   3.29e-08
    COAD-AA-3860	categ 7	N = 44191   n = 1	mu =   3.29e-08
    COAD-AA-3975	categ 7	N = 44191   n = 1	mu =   3.29e-08
    COAD-AA-A00U	categ 7	N = 38761   n = 1	mu =   3.45e-08
    COAD-AA-A01S	categ 7	N = 44191   n = 1	mu =   3.29e-08
    COAD-AA-A02F	categ 7	N = 44191   n = 1	mu =   3.29e-08
    COAD-AA-A02J	categ 7	N = 44191   n = 1	mu =   3.29e-08
    READ-AG-3583	categ 7	N = 38761   n = 1	mu =   3.45e-08
    READ-AG-3587	categ 7	N = 38761   n = 1	mu =   3.45e-08
    READ-AG-3601	categ 7	N = 38761   n = 1	mu =   3.45e-08
    READ-AG-3909	categ 7	N = 44191   n = 1	mu =   3.29e-08
    READ-AG-4005	categ 7	N = 44191   n = 1	mu =   3.29e-08
    READ-AG-A020	categ 7	N = 44191   n = 1	mu =   3.29e-08
549	ST_GRANULE_CELL_SURVIVAL_PATHWAY	0
In gene ST_INTEGRIN_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 11204   n = 13	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 11469   n = 22	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 86643   n = 21	mu =   3.17e-04
    COAD-AA-3986	categ 6	N = 187852  n = 1	mu =   2.96e-07
In gene ST_JAK_STAT_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3678	categ 6	N = 21514   n = 1	mu =   2.96e-07
In gene ST_JNK_MAPK_PATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 73076   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 73076   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 73076   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 73076   n = 1	mu =   2.76e-07
    COAD-AA-3842	categ 6	N = 77331   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 77331   n = 1	mu =   8.55e-07
    COAD-AA-3986	categ 6	N = 77331   n = 1	mu =   2.96e-07
    COAD-AA-A004	categ 6	N = 77331   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 77331   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 73076   n = 1	mu =   1.72e-07
    READ-AG-3890	categ 6	N = 77331   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 77331   n = 1	mu =   3.29e-07
556	ST_JNK_MAPK_PATHWAY	1.110223e-16
In gene ST_MYOCYTE_AD_PATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 69618   n = 1	mu =   1.03e-07
    COAD-AA-3522	categ 6	N = 69618   n = 1	mu =   1.03e-07
    COAD-AA-3530	categ 6	N = 70808   n = 1	mu =   1.97e-07
    COAD-AA-3538	categ 6	N = 69618   n = 1	mu =   1.03e-07
    COAD-AA-3548	categ 6	N = 69618   n = 1	mu =   1.03e-07
    COAD-AA-3552	categ 6	N = 69618   n = 1	mu =   1.38e-07
    COAD-AA-3553	categ 6	N = 69618   n = 1	mu =   1.72e-07
    COAD-AA-3561	categ 6	N = 69618   n = 1	mu =   1.72e-07
    COAD-AA-3562	categ 6	N = 69618   n = 1	mu =   1.38e-07
    COAD-AA-3678	categ 6	N = 70808   n = 1	mu =   2.96e-07
    COAD-AA-3851	categ 6	N = 70808   n = 1	mu =   3.95e-07
    COAD-AA-3852	categ 6	N = 70808   n = 1	mu =   3.62e-07
    COAD-AA-3854	categ 6	N = 70808   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 70808   n = 1	mu =   8.55e-07
    COAD-AA-A00K	categ 6	N = 69618   n = 1	mu =   5.86e-07
    COAD-AA-A00W	categ 6	N = 69618   n = 1	mu =   1.38e-07
    COAD-AA-A00Z	categ 6	N = 69618   n = 1	mu =   3.45e-08
    COAD-AA-A017	categ 6	N = 70808   n = 1	mu =   2.63e-07
    COAD-AA-A01I	categ 6	N = 70808   n = 1	mu =   3.29e-07
    COAD-AA-A01Z	categ 6	N = 70808   n = 1	mu =   3.62e-07
    READ-AF-2692	categ 6	N = 69618   n = 1	mu =   1.72e-07
    READ-AF-3400	categ 6	N = 69618   n = 1	mu =   6.90e-08
    READ-AG-3580	categ 6	N = 69618   n = 1	mu =   1.72e-07
    READ-AG-3584	categ 6	N = 69618   n = 1	mu =   1.72e-07
    READ-AG-3594	categ 6	N = 69618   n = 1	mu =   1.72e-07
    READ-AG-3605	categ 6	N = 69618   n = 1	mu =   1.38e-07
    READ-AG-3727	categ 6	N = 70808   n = 1	mu =   2.96e-07
    READ-AG-3883	categ 6	N = 70808   n = 1	mu =   4.60e-07
    READ-AG-3890	categ 6	N = 70808   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 70808   n = 1	mu =   3.29e-07
    READ-AG-A008	categ 6	N = 69618   n = 1	mu =   1.03e-07
    READ-AG-A01L	categ 6	N = 71656   n = 1	mu =   3.23e-07
    COAD-AA-3519	categ 7	N = 69618   n = 1	mu =   3.45e-08
    COAD-AA-3531	categ 7	N = 69618   n = 1	mu =   3.45e-08
    COAD-AA-3837	categ 7	N = 70808   n = 1	mu =   3.29e-08
    COAD-AA-3860	categ 7	N = 70808   n = 1	mu =   3.29e-08
    COAD-AA-3975	categ 7	N = 70808   n = 1	mu =   3.29e-08
    COAD-AA-A00U	categ 7	N = 69618   n = 1	mu =   3.45e-08
    COAD-AA-A01S	categ 7	N = 70808   n = 1	mu =   3.29e-08
    COAD-AA-A02F	categ 7	N = 70808   n = 1	mu =   3.29e-08
    COAD-AA-A02J	categ 7	N = 70808   n = 1	mu =   3.29e-08
    READ-AG-3583	categ 7	N = 69618   n = 1	mu =   3.45e-08
    READ-AG-3587	categ 7	N = 69618   n = 1	mu =   3.45e-08
    READ-AG-3601	categ 7	N = 69618   n = 1	mu =   3.45e-08
    READ-AG-3909	categ 7	N = 70808   n = 1	mu =   3.29e-08
    READ-AG-4005	categ 7	N = 70808   n = 1	mu =   3.29e-08
    READ-AG-A020	categ 7	N = 70808   n = 1	mu =   3.29e-08
557	ST_MYOCYTE_AD_PATHWAY	0
In gene ST_P38_MAPK_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 51644   n = 1	mu =   2.96e-07
In gene ST_T_CELL_SIGNAL_TRANSDUCTION the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5222    n = 15	mu =   1.44e-03
    READ-AG-3594	categ 6	N = 81068   n = 1	mu =   1.72e-07
In gene ST_TUMOR_NECROSIS_FACTOR_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 42079   n = 1	mu =   2.96e-07
In gene ST_WNT_BETA_CATENIN_PATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 59505   n = 1	mu =   1.03e-07
    COAD-AA-3522	categ 6	N = 59505   n = 1	mu =   1.03e-07
    COAD-AA-3530	categ 6	N = 61450   n = 1	mu =   1.97e-07
    COAD-AA-3538	categ 6	N = 59505   n = 1	mu =   1.03e-07
    COAD-AA-3548	categ 6	N = 59505   n = 1	mu =   1.03e-07
    COAD-AA-3552	categ 6	N = 59505   n = 1	mu =   1.38e-07
    COAD-AA-3553	categ 6	N = 59505   n = 1	mu =   1.72e-07
    COAD-AA-3561	categ 6	N = 59505   n = 1	mu =   1.72e-07
    COAD-AA-3562	categ 6	N = 59505   n = 1	mu =   1.38e-07
    COAD-AA-3678	categ 6	N = 61450   n = 1	mu =   2.96e-07
    COAD-AA-3851	categ 6	N = 61450   n = 1	mu =   3.95e-07
    COAD-AA-3852	categ 6	N = 61450   n = 1	mu =   3.62e-07
    COAD-AA-3854	categ 6	N = 61450   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 61450   n = 1	mu =   8.55e-07
    COAD-AA-A00K	categ 6	N = 59505   n = 1	mu =   5.86e-07
    COAD-AA-A00W	categ 6	N = 59505   n = 1	mu =   1.38e-07
    COAD-AA-A00Z	categ 6	N = 59505   n = 1	mu =   3.45e-08
    COAD-AA-A017	categ 6	N = 61450   n = 1	mu =   2.63e-07
    COAD-AA-A01I	categ 6	N = 61450   n = 1	mu =   3.29e-07
    COAD-AA-A01Z	categ 6	N = 61450   n = 1	mu =   3.62e-07
    READ-AF-2692	categ 6	N = 59505   n = 1	mu =   1.72e-07
    READ-AF-3400	categ 6	N = 59505   n = 1	mu =   6.90e-08
    READ-AG-3580	categ 6	N = 59505   n = 1	mu =   1.72e-07
    READ-AG-3584	categ 6	N = 59505   n = 1	mu =   1.72e-07
    READ-AG-3594	categ 6	N = 59505   n = 1	mu =   1.72e-07
    READ-AG-3605	categ 6	N = 59505   n = 1	mu =   1.38e-07
    READ-AG-3727	categ 6	N = 61450   n = 1	mu =   2.96e-07
    READ-AG-3883	categ 6	N = 61450   n = 1	mu =   4.60e-07
    READ-AG-3890	categ 6	N = 61450   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 61450   n = 1	mu =   3.29e-07
    READ-AG-A008	categ 6	N = 59505   n = 1	mu =   1.03e-07
    READ-AG-A01L	categ 6	N = 62416   n = 1	mu =   3.23e-07
    COAD-AA-3519	categ 7	N = 59505   n = 1	mu =   3.45e-08
    COAD-AA-3531	categ 7	N = 59505   n = 1	mu =   3.45e-08
    COAD-AA-3837	categ 7	N = 61450   n = 1	mu =   3.29e-08
    COAD-AA-3860	categ 7	N = 61450   n = 1	mu =   3.29e-08
    COAD-AA-3975	categ 7	N = 61450   n = 1	mu =   3.29e-08
    COAD-AA-A00U	categ 7	N = 59505   n = 1	mu =   3.45e-08
    COAD-AA-A01S	categ 7	N = 61450   n = 1	mu =   3.29e-08
    COAD-AA-A02F	categ 7	N = 61450   n = 1	mu =   3.29e-08
    COAD-AA-A02J	categ 7	N = 61450   n = 1	mu =   3.29e-08
    READ-AG-3583	categ 7	N = 59505   n = 1	mu =   3.45e-08
    READ-AG-3587	categ 7	N = 59505   n = 1	mu =   3.45e-08
    READ-AG-3601	categ 7	N = 59505   n = 1	mu =   3.45e-08
    READ-AG-3909	categ 7	N = 61450   n = 1	mu =   3.29e-08
    READ-AG-4005	categ 7	N = 61450   n = 1	mu =   3.29e-08
    READ-AG-A020	categ 7	N = 61450   n = 1	mu =   3.29e-08
565	ST_WNT_BETA_CATENIN_PATHWAY	1.443290e-15
In gene STARCH_AND_SUCROSE_METABOLISM the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 4602    n = 7	mu =   1.44e-03
    READ-AG-4015	categ 6	N = 85413   n = 1	mu =   3.29e-07
In gene STATIN_PATHWAY_PHARMGKB the following bins exceed PROBCAP:
    COAD-AA-3678	categ 6	N = 38002   n = 1	mu =   2.96e-07
In gene STRESSPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 37631   n = 1	mu =   2.96e-07
In gene STRIATED_MUSCLE_CONTRACTION the following bins exceed PROBCAP:
    COAD-AA-3984	categ 2	N = 9314    n = 9	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 9314    n = 15	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 9314    n = 16	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 9507    n = 29	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 91593   n = 50	mu =   3.17e-04
    COAD-AA-3560	categ 6	N = 211066  n = 1	mu =   2.76e-07
In gene TCRAPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 13843   n = 1	mu =   3.29e-08
In gene TCRPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 72819   n = 1	mu =   2.96e-07
    READ-AG-3574	categ 6	N = 69446   n = 1	mu =   1.03e-07
582	TCRPATHWAY	2.859248e-07
In gene TELPATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 41491   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 41491   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 41491   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 41491   n = 1	mu =   2.76e-07
    COAD-AA-3842	categ 6	N = 43155   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 43155   n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 43155   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 43155   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 41491   n = 1	mu =   1.72e-07
    READ-AG-3890	categ 6	N = 43155   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 43155   n = 1	mu =   3.29e-07
584	TELPATHWAY	2.220446e-16
In gene TERTPATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 10171   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 10171   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 10171   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 10171   n = 1	mu =   2.76e-07
    COAD-AA-3842	categ 6	N = 10645   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 10645   n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 10645   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 10645   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 10171   n = 1	mu =   1.72e-07
    READ-AG-3890	categ 6	N = 10645   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 10645   n = 1	mu =   3.29e-07
587	TERTPATHWAY	7.771561e-16
In gene TGFBPATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 38806   n = 1	mu =   1.03e-07
    COAD-AA-3522	categ 6	N = 38806   n = 1	mu =   1.03e-07
    COAD-AA-3530	categ 6	N = 38750   n = 1	mu =   1.97e-07
    COAD-AA-3538	categ 6	N = 38806   n = 1	mu =   1.03e-07
    COAD-AA-3548	categ 6	N = 38806   n = 1	mu =   1.03e-07
    COAD-AA-3552	categ 6	N = 38806   n = 1	mu =   1.38e-07
    COAD-AA-3553	categ 6	N = 38806   n = 1	mu =   1.72e-07
    COAD-AA-3561	categ 6	N = 38806   n = 1	mu =   1.72e-07
    COAD-AA-3562	categ 6	N = 38806   n = 1	mu =   1.38e-07
    COAD-AA-3678	categ 6	N = 38750   n = 1	mu =   2.96e-07
    COAD-AA-3851	categ 6	N = 38750   n = 1	mu =   3.95e-07
    COAD-AA-3852	categ 6	N = 38750   n = 1	mu =   3.62e-07
    COAD-AA-3854	categ 6	N = 38750   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 38750   n = 1	mu =   8.55e-07
    COAD-AA-A00K	categ 6	N = 38806   n = 1	mu =   5.86e-07
    COAD-AA-A00W	categ 6	N = 38806   n = 1	mu =   1.38e-07
    COAD-AA-A00Z	categ 6	N = 38806   n = 1	mu =   3.45e-08
    COAD-AA-A017	categ 6	N = 38750   n = 1	mu =   2.63e-07
    COAD-AA-A01I	categ 6	N = 38750   n = 1	mu =   3.29e-07
    COAD-AA-A01Z	categ 6	N = 38750   n = 1	mu =   3.62e-07
    READ-AF-2692	categ 6	N = 38806   n = 1	mu =   1.72e-07
    READ-AF-3400	categ 6	N = 38806   n = 1	mu =   6.90e-08
    READ-AG-3580	categ 6	N = 38806   n = 1	mu =   1.72e-07
    READ-AG-3584	categ 6	N = 38806   n = 1	mu =   1.72e-07
    READ-AG-3594	categ 6	N = 38806   n = 1	mu =   1.72e-07
    READ-AG-3605	categ 6	N = 38806   n = 1	mu =   1.38e-07
    READ-AG-3727	categ 6	N = 38750   n = 1	mu =   2.96e-07
    READ-AG-3883	categ 6	N = 38750   n = 1	mu =   4.60e-07
    READ-AG-3890	categ 6	N = 38750   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 38750   n = 1	mu =   3.29e-07
    READ-AG-A008	categ 6	N = 38806   n = 1	mu =   1.03e-07
    READ-AG-A01L	categ 6	N = 39112   n = 1	mu =   3.23e-07
    COAD-AA-3519	categ 7	N = 38806   n = 1	mu =   3.45e-08
    COAD-AA-3531	categ 7	N = 38806   n = 1	mu =   3.45e-08
    COAD-AA-3837	categ 7	N = 38750   n = 1	mu =   3.29e-08
    COAD-AA-3860	categ 7	N = 38750   n = 1	mu =   3.29e-08
    COAD-AA-3975	categ 7	N = 38750   n = 1	mu =   3.29e-08
    COAD-AA-A00U	categ 7	N = 38806   n = 1	mu =   3.45e-08
    COAD-AA-A01S	categ 7	N = 38750   n = 1	mu =   3.29e-08
    COAD-AA-A02F	categ 7	N = 38750   n = 1	mu =   3.29e-08
    COAD-AA-A02J	categ 7	N = 38750   n = 1	mu =   3.29e-08
    READ-AG-3583	categ 7	N = 38806   n = 1	mu =   3.45e-08
    READ-AG-3587	categ 7	N = 38806   n = 1	mu =   3.45e-08
    READ-AG-3601	categ 7	N = 38806   n = 1	mu =   3.45e-08
    READ-AG-3909	categ 7	N = 38750   n = 1	mu =   3.29e-08
    READ-AG-4005	categ 7	N = 38750   n = 1	mu =   3.29e-08
    READ-AG-A020	categ 7	N = 38750   n = 1	mu =   3.29e-08
588	TGFBPATHWAY	2.220446e-16
In gene TH1TH2PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 19199   n = 1	mu =   3.29e-08
In gene TIDPATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 26406   n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 26406   n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 26406   n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 26406   n = 1	mu =   2.76e-07
    COAD-AA-3842	categ 6	N = 27895   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 27895   n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 27895   n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 27895   n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 26406   n = 1	mu =   1.72e-07
    READ-AG-3890	categ 6	N = 27895   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 27895   n = 1	mu =   3.29e-07
591	TIDPATHWAY	2.331468e-15
In gene TNFR1PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 61033   n = 1	mu =   2.96e-07
In gene TOLLPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 55669   n = 1	mu =   2.96e-07
In gene TPOPATHWAY the following bins exceed PROBCAP:
    READ-AG-3574	categ 6	N = 44801   n = 1	mu =   1.03e-07
596	TPOPATHWAY	1.611420e-06
In gene TRANSLATION_FACTORS the following bins exceed PROBCAP:
    COAD-AA-A017	categ 6	N = 67748   n = 1	mu =   2.63e-07
598	TRKAPATHWAY	4.038991e-13
611	VEGFPATHWAY	5.574434e-05
In gene WNT_SIGNALING the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 8306    n = 7	mu =   1.44e-03
    COAD-A6-2674	categ 6	N = 83122   n = 1	mu =   1.03e-07
    COAD-AA-3522	categ 6	N = 83122   n = 1	mu =   1.03e-07
    COAD-AA-3530	categ 6	N = 91742   n = 1	mu =   1.97e-07
    COAD-AA-3538	categ 6	N = 83122   n = 1	mu =   1.03e-07
    COAD-AA-3548	categ 6	N = 83122   n = 1	mu =   1.03e-07
    COAD-AA-3552	categ 6	N = 83122   n = 1	mu =   1.38e-07
    COAD-AA-3553	categ 6	N = 83122   n = 1	mu =   1.72e-07
    COAD-AA-3561	categ 6	N = 83122   n = 1	mu =   1.72e-07
    COAD-AA-3562	categ 6	N = 83122   n = 1	mu =   1.38e-07
    COAD-AA-3678	categ 6	N = 91742   n = 1	mu =   2.96e-07
    COAD-AA-3851	categ 6	N = 91742   n = 1	mu =   3.95e-07
    COAD-AA-3852	categ 6	N = 91742   n = 1	mu =   3.62e-07
    COAD-AA-3854	categ 6	N = 91742   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 91742   n = 1	mu =   8.55e-07
    COAD-AA-A00K	categ 6	N = 83122   n = 1	mu =   5.86e-07
    COAD-AA-A00W	categ 6	N = 83122   n = 1	mu =   1.38e-07
    COAD-AA-A00Z	categ 6	N = 83122   n = 1	mu =   3.45e-08
    COAD-AA-A017	categ 6	N = 91742   n = 1	mu =   2.63e-07
    COAD-AA-A01I	categ 6	N = 91742   n = 1	mu =   3.29e-07
    COAD-AA-A01Z	categ 6	N = 91742   n = 1	mu =   3.62e-07
    READ-AF-2692	categ 6	N = 83122   n = 1	mu =   1.72e-07
    READ-AF-3400	categ 6	N = 83122   n = 1	mu =   6.90e-08
    READ-AG-3580	categ 6	N = 83122   n = 1	mu =   1.72e-07
    READ-AG-3584	categ 6	N = 83122   n = 1	mu =   1.72e-07
    READ-AG-3594	categ 6	N = 83122   n = 1	mu =   1.72e-07
    READ-AG-3605	categ 6	N = 83122   n = 1	mu =   1.38e-07
    READ-AG-3727	categ 6	N = 91742   n = 1	mu =   2.96e-07
    READ-AG-3883	categ 6	N = 91742   n = 1	mu =   4.60e-07
    READ-AG-3890	categ 6	N = 91742   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 91742   n = 1	mu =   3.29e-07
    READ-AG-A008	categ 6	N = 83122   n = 1	mu =   1.03e-07
    READ-AG-A01L	categ 6	N = 92747   n = 1	mu =   3.23e-07
    COAD-AA-3519	categ 7	N = 83122   n = 1	mu =   3.45e-08
    COAD-AA-3531	categ 7	N = 83122   n = 1	mu =   3.45e-08
    COAD-AA-3837	categ 7	N = 91742   n = 1	mu =   3.29e-08
    COAD-AA-3860	categ 7	N = 91742   n = 1	mu =   3.29e-08
    COAD-AA-3975	categ 7	N = 91742   n = 1	mu =   3.29e-08
    COAD-AA-A00U	categ 7	N = 83122   n = 1	mu =   3.45e-08
    COAD-AA-A01S	categ 7	N = 91742   n = 1	mu =   3.29e-08
    COAD-AA-A02F	categ 7	N = 91742   n = 1	mu =   3.29e-08
    COAD-AA-A02J	categ 7	N = 91742   n = 1	mu =   3.29e-08
    READ-AG-3583	categ 7	N = 83122   n = 1	mu =   3.45e-08
    READ-AG-3587	categ 7	N = 83122   n = 1	mu =   3.45e-08
    READ-AG-3601	categ 7	N = 83122   n = 1	mu =   3.45e-08
    READ-AG-3909	categ 7	N = 91742   n = 1	mu =   3.29e-08
    READ-AG-4005	categ 7	N = 91742   n = 1	mu =   3.29e-08
    READ-AG-A020	categ 7	N = 91742   n = 1	mu =   3.29e-08
615	WNT_SIGNALING	3.330669e-16
In gene WNTPATHWAY the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 42665   n = 1	mu =   1.03e-07
    COAD-AA-3522	categ 6	N = 42665   n = 1	mu =   1.03e-07
    COAD-AA-3530	categ 6	N = 44245   n = 1	mu =   1.97e-07
    COAD-AA-3538	categ 6	N = 42665   n = 1	mu =   1.03e-07
    COAD-AA-3548	categ 6	N = 42665   n = 1	mu =   1.03e-07
    COAD-AA-3552	categ 6	N = 42665   n = 1	mu =   1.38e-07
    COAD-AA-3553	categ 6	N = 42665   n = 1	mu =   1.72e-07
    COAD-AA-3561	categ 6	N = 42665   n = 1	mu =   1.72e-07
    COAD-AA-3562	categ 6	N = 42665   n = 1	mu =   1.38e-07
    COAD-AA-3678	categ 6	N = 44245   n = 1	mu =   2.96e-07
    COAD-AA-3851	categ 6	N = 44245   n = 1	mu =   3.95e-07
    COAD-AA-3852	categ 6	N = 44245   n = 1	mu =   3.62e-07
    COAD-AA-3854	categ 6	N = 44245   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 44245   n = 1	mu =   8.55e-07
    COAD-AA-A00K	categ 6	N = 42665   n = 1	mu =   5.86e-07
    COAD-AA-A00W	categ 6	N = 42665   n = 1	mu =   1.38e-07
    COAD-AA-A00Z	categ 6	N = 42665   n = 1	mu =   3.45e-08
    COAD-AA-A017	categ 6	N = 44245   n = 1	mu =   2.63e-07
    COAD-AA-A01I	categ 6	N = 44245   n = 1	mu =   3.29e-07
    COAD-AA-A01Z	categ 6	N = 44245   n = 1	mu =   3.62e-07
    READ-AF-2692	categ 6	N = 42665   n = 1	mu =   1.72e-07
    READ-AF-3400	categ 6	N = 42665   n = 1	mu =   6.90e-08
    READ-AG-3580	categ 6	N = 42665   n = 1	mu =   1.72e-07
    READ-AG-3584	categ 6	N = 42665   n = 1	mu =   1.72e-07
    READ-AG-3594	categ 6	N = 42665   n = 1	mu =   1.72e-07
    READ-AG-3605	categ 6	N = 42665   n = 1	mu =   1.38e-07
    READ-AG-3727	categ 6	N = 44245   n = 1	mu =   2.96e-07
    READ-AG-3883	categ 6	N = 44245   n = 1	mu =   4.60e-07
    READ-AG-3890	categ 6	N = 44245   n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 44245   n = 1	mu =   3.29e-07
    READ-AG-A008	categ 6	N = 42665   n = 1	mu =   1.03e-07
    READ-AG-A01L	categ 6	N = 45151   n = 1	mu =   3.23e-07
    COAD-AA-3519	categ 7	N = 42665   n = 1	mu =   3.45e-08
    COAD-AA-3531	categ 7	N = 42665   n = 1	mu =   3.45e-08
    COAD-AA-3837	categ 7	N = 44245   n = 1	mu =   3.29e-08
    COAD-AA-3860	categ 7	N = 44245   n = 1	mu =   3.29e-08
    COAD-AA-3975	categ 7	N = 44245   n = 1	mu =   3.29e-08
    COAD-AA-A00U	categ 7	N = 42665   n = 1	mu =   3.45e-08
    COAD-AA-A01S	categ 7	N = 44245   n = 1	mu =   3.29e-08
    COAD-AA-A02F	categ 7	N = 44245   n = 1	mu =   3.29e-08
    COAD-AA-A02J	categ 7	N = 44245   n = 1	mu =   3.29e-08
    READ-AG-3583	categ 7	N = 42665   n = 1	mu =   3.45e-08
    READ-AG-3587	categ 7	N = 42665   n = 1	mu =   3.45e-08
    READ-AG-3601	categ 7	N = 42665   n = 1	mu =   3.45e-08
    READ-AG-3909	categ 7	N = 44245   n = 1	mu =   3.29e-08
    READ-AG-4005	categ 7	N = 44245   n = 1	mu =   3.29e-08
    READ-AG-A020	categ 7	N = 44245   n = 1	mu =   3.29e-08
616	WNTPATHWAY	0
Done
Outputting significance table: ./COADREAD.sig_genesets.txt
Done
Mapping 640 genesets from /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt to list of project genes.
100/640 200/640 300/640 400/640 500/640 600/640 
Total of 616 genesets contain at least one project gene.
Finding number of unique sites, unique patients: 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients
Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Calculating significance of each gene.
Using projection method.
In gene HISTONE_METHYLTRANSFERASE the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 9704    n = 9	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 9940    n = 11	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 85141   n = 17	mu =   3.17e-04
    COAD-AA-A00K	categ 6	N = 174530  n = 1	mu =   5.86e-07
In gene ACHPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 21392   n = 1	mu =   1.72e-07
In gene AKAPCENTROSOMEPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 27529   n = 1	mu =   8.55e-07
In gene ALKPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 39365   n = 1	mu =   1.72e-07
    COAD-AA-3554	categ 6	N = 39365   n = 1	mu =   7.59e-07
In gene AMINOACYL_TRNA_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-3538	categ 6	N = 47869   n = 1	mu =   1.03e-07
In gene AMIPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 34751   n = 1	mu =   3.29e-08
In gene APOPTOSIS the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5244    n = 9	mu =   1.44e-03
In gene ASBCELLPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 6054    n = 1	mu =   3.29e-08
In gene AT1RPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 49959   n = 1	mu =   1.72e-07
In gene BBCELLPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 3654    n = 1	mu =   3.29e-08
In gene BILE_ACID_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 35464   n = 1	mu =   8.55e-07
In gene BIOPEPTIDESPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 62482   n = 1	mu =   1.72e-07
In gene BLOOD_GROUP_GLYCOLIPID_BIOSYNTHESIS_NEOLACTOSERIES the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 9552    n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 9552    n = 1	mu =   8.55e-07
In gene BLYMPHOCYTEPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 23158   n = 1	mu =   3.29e-08
In gene CALCINEURIN_NF_AT_SIGNALING the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 8408    n = 13	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 8680    n = 15	mu =   1.44e-03
    READ-AG-A008	categ 6	N = 131484  n = 1	mu =   1.03e-07
In gene CALCIUM_REGULATION_IN_CARDIAC_CELLS the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 20634   n = 10	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 20634   n = 8	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 20634   n = 17	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 20634   n = 15	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 21478   n = 38	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 132449  n = 22	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 136359  n = 45	mu =   3.17e-04
    COAD-AA-3980	categ 6	N = 287508  n = 1	mu =   8.55e-07
    READ-AG-3574	categ 6	N = 284932  n = 1	mu =   1.03e-07
In gene CCR5PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 20325   n = 1	mu =   1.72e-07
In gene CDMACPATHWAY the following bins exceed PROBCAP:
    READ-AG-3727	categ 6	N = 23546   n = 1	mu =   2.96e-07
In gene CELL_CYCLE_KEGG the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 8063    n = 5	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 8277    n = 12	mu =   1.44e-03
In gene CSKPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 34751   n = 1	mu =   3.29e-08
In gene CTLA4PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 15917   n = 1	mu =   3.29e-08
In gene CXCR4PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 37780   n = 1	mu =   1.72e-07
In gene CYSTEINE_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-3538	categ 6	N = 9686    n = 1	mu =   1.03e-07
In gene EGFPATHWAY the following bins exceed PROBCAP:
    READ-AG-3574	categ 6	N = 51292   n = 1	mu =   1.03e-07
In gene EOSINOPHILSPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 4592    n = 1	mu =   3.29e-08
In gene ERBB3PATHWAY the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 11246   n = 1	mu =   4.60e-07
In gene G1_TO_S_CELL_CYCLE_REACTOME the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 6370    n = 8	mu =   1.44e-03
In gene G_PROTEIN_SIGNALING the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 10970   n = 10	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 11300   n = 15	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 79329   n = 23	mu =   3.17e-04
    READ-AG-A01L	categ 6	N = 177990  n = 1	mu =   3.23e-07
In gene GANGLIOSIDE_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 8465    n = 1	mu =   2.96e-07
In gene GLOBOSIDE_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 15441   n = 1	mu =   2.96e-07
In gene GLYCEROLIPID_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 73171   n = 1	mu =   8.55e-07
In gene GLYCEROPHOSPHOLIPID_METABOLISM the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5231    n = 8	mu =   1.44e-03
In gene GPCRDB_CLASS_A_RHODOPSIN_LIKE the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 13469   n = 12	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 13766   n = 21	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 85056   n = 27	mu =   3.17e-04
    COAD-AA-3554	categ 6	N = 161693  n = 1	mu =   7.59e-07
In gene GPCRDB_OTHER the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 7489    n = 7	mu =   1.44e-03
In gene HBXPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 12975   n = 1	mu =   1.72e-07
In gene HIVNEFPATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5902    n = 11	mu =   1.44e-03
    READ-AG-3574	categ 6	N = 102262  n = 1	mu =   1.03e-07
In gene HSA00010_GLYCOLYSIS_AND_GLUCONEOGENESIS the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5524    n = 4	mu =   1.44e-03
In gene HSA00120_BILE_ACID_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-3678	categ 6	N = 48701   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 48701   n = 1	mu =   8.55e-07
In gene HSA00150_ANDROGEN_AND_ESTROGEN_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-A01I	categ 6	N = 73043   n = 1	mu =   3.29e-07
In gene HSA00190_OXIDATIVE_PHOSPHORYLATION the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5719    n = 9	mu =   1.44e-03
In gene HSA00230_PURINE_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 14754   n = 1	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 14754   n = 9	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 14754   n = 16	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 14754   n = 6	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 15073   n = 18	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 111525  n = 26	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 113060  n = 27	mu =   3.17e-04
    COAD-AA-3560	categ 6	N = 242022  n = 1	mu =   2.76e-07
    READ-AG-3574	categ 6	N = 242022  n = 1	mu =   1.03e-07
    READ-AG-3608	categ 6	N = 242022  n = 1	mu =   1.38e-07
In gene HSA00240_PYRIMIDINE_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 7291    n = 4	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 7456    n = 6	mu =   1.44e-03
    COAD-AA-3560	categ 6	N = 121263  n = 1	mu =   2.76e-07
    READ-AG-3574	categ 6	N = 121263  n = 1	mu =   1.03e-07
    READ-AG-3608	categ 6	N = 121263  n = 1	mu =   1.38e-07
In gene HSA00271_METHIONINE_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 31689   n = 1	mu =   2.96e-07
In gene HSA00272_CYSTEINE_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-3538	categ 6	N = 17449   n = 1	mu =   1.03e-07
In gene HSA00310_LYSINE_DEGRADATION the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5763    n = 7	mu =   1.44e-03
In gene HSA00350_TYROSINE_METABOLISM the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5259    n = 2	mu =   1.44e-03
In gene HSA00380_TRYPTOPHAN_METABOLISM the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5323    n = 5	mu =   1.44e-03
In gene HSA00500_STARCH_AND_SUCROSE_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 9588    n = 9	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 9734    n = 14	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 81928   n = 22	mu =   3.17e-04
    READ-AG-4015	categ 6	N = 186324  n = 1	mu =   3.29e-07
In gene HSA00510_N_GLYCAN_BIOSYNTHESIS the following bins exceed PROBCAP:
    READ-AG-3580	categ 6	N = 61427   n = 1	mu =   1.72e-07
In gene HSA00533_KERATAN_SULFATE_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 19254   n = 1	mu =   8.55e-07
In gene HSA00534_HEPARAN_SULFATE_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-3851	categ 6	N = 32148   n = 1	mu =   3.95e-07
In gene HSA00561_GLYCEROLIPID_METABOLISM the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5177    n = 6	mu =   1.44e-03
    COAD-AA-3980	categ 6	N = 89238   n = 1	mu =   8.55e-07
In gene HSA00562_INOSITOL_PHOSPHATE_METABOLISM the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 7333    n = 4	mu =   1.44e-03
In gene HSA00564_GLYCEROPHOSPHOLIPID_METABOLISM the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 6127    n = 10	mu =   1.44e-03
    READ-AG-A01L	categ 6	N = 103123  n = 1	mu =   3.23e-07
In gene HSA00565_ETHER_LIPID_METABOLISM the following bins exceed PROBCAP:
    READ-AG-A01L	categ 6	N = 36027   n = 1	mu =   3.23e-07
In gene HSA00602_GLYCOSPHINGOLIPID_BIOSYNTHESIS_NEO_LACTOSERIES the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 24982   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 24982   n = 1	mu =   8.55e-07
In gene HSA00603_GLYCOSPHINGOLIPID_BIOSYNTHESIS_GLOBOSERIES the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 16368   n = 1	mu =   2.96e-07
In gene HSA00604_GLYCOSPHINGOLIPID_BIOSYNTHESIS_GANGLIOSERIES the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 24946   n = 1	mu =   2.96e-07
In gene HSA00790_FOLATE_BIOSYNTHESIS the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5827    n = 8	mu =   1.44e-03
In gene HSA00970_AMINOACYL_TRNA_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-3538	categ 6	N = 76521   n = 1	mu =   1.03e-07
In gene HSA01030_GLYCAN_STRUCTURES_BIOSYNTHESIS_1 the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 11810   n = 13	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 12008   n = 16	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 77152   n = 14	mu =   3.17e-04
    COAD-AA-3851	categ 6	N = 168300  n = 1	mu =   3.95e-07
    COAD-AA-3980	categ 6	N = 168300  n = 1	mu =   8.55e-07
    READ-AG-3580	categ 6	N = 156593  n = 1	mu =   1.72e-07
In gene HSA01031_GLYCAN_STRUCTURES_BIOSYNTHESIS_2 the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5173    n = 8	mu =   1.44e-03
    COAD-AA-3842	categ 6	N = 75286   n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 75286   n = 1	mu =   8.55e-07
In gene HSA01040_POLYUNSATURATED_FATTY_ACID_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-A01I	categ 6	N = 22679   n = 1	mu =   3.29e-07
In gene HSA01430_CELL_COMMUNICATION the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 24283   n = 10	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 24283   n = 18	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 24283   n = 20	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 24283   n = 15	mu =   8.59e-04
    READ-AG-3892	categ 2	N = 24283   n = 3	mu =   2.46e-04
    READ-AG-A002	categ 2	N = 24940   n = 26	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 183074  n = 25	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 187076  n = 47	mu =   3.17e-04
    READ-AG-A002	categ 4	N = 166999  n = 9	mu =   9.14e-05
    COAD-AA-3561	categ 6	N = 345513  n = 1	mu =   1.72e-07
    COAD-AA-3980	categ 6	N = 371208  n = 1	mu =   8.55e-07
    COAD-AA-A00K	categ 6	N = 345513  n = 1	mu =   5.86e-07
In gene HSA02010_ABC_TRANSPORTERS_GENERAL the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 8940    n = 11	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 9143    n = 20	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 79155   n = 32	mu =   3.17e-04
    COAD-AA-3522	categ 6	N = 162292  n = 1	mu =   1.03e-07
    COAD-AA-3529	categ 6	N = 162292  n = 1	mu =   2.41e-07
In gene HSA03050_PROTEASOME the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 24167   n = 1	mu =   7.59e-07
In gene HSA03320_PPAR_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5802    n = 8	mu =   1.44e-03
In gene HSA04010_MAPK_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3715	categ 2	N = 29863   n = 8	mu =   2.23e-04
    COAD-AA-3977	categ 2	N = 29863   n = 14	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 29863   n = 10	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 29863   n = 18	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 29863   n = 21	mu =   8.59e-04
    READ-AG-3892	categ 2	N = 29863   n = 6	mu =   2.46e-04
    READ-AG-A002	categ 2	N = 30989   n = 50	mu =   1.44e-03
    COAD-AA-3984	categ 3	N = 201768  n = 15	mu =   7.36e-05
    COAD-AA-A00N	categ 3	N = 201768  n = 10	mu =   7.55e-05
    COAD-AA-A010	categ 3	N = 201768  n = 30	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 207253  n = 43	mu =   3.17e-04
    READ-AG-A002	categ 4	N = 208978  n = 21	mu =   9.14e-05
    READ-AG-3574	categ 6	N = 416888  n = 1	mu =   1.03e-07
    READ-AG-3584	categ 6	N = 416888  n = 1	mu =   1.72e-07
    READ-AG-4015	categ 6	N = 436464  n = 1	mu =   3.29e-07
In gene HSA04012_ERBB_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 9222    n = 5	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 9440    n = 17	mu =   1.44e-03
    READ-AG-3727	categ 6	N = 142008  n = 1	mu =   2.96e-07
    READ-AG-3883	categ 6	N = 142008  n = 1	mu =   4.60e-07
In gene HSA04020_CALCIUM_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3715	categ 2	N = 29492   n = 6	mu =   2.23e-04
    COAD-AA-3977	categ 2	N = 29492   n = 18	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 29492   n = 12	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 29492   n = 23	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 29492   n = 21	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 30610   n = 48	mu =   1.44e-03
    COAD-AA-3984	categ 3	N = 187012  n = 14	mu =   7.36e-05
    COAD-AA-A00N	categ 3	N = 187012  n = 13	mu =   7.55e-05
    COAD-AA-A010	categ 3	N = 187012  n = 35	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 192050  n = 50	mu =   3.17e-04
    READ-AG-A002	categ 4	N = 191493  n = 10	mu =   9.14e-05
    COAD-AA-3553	categ 6	N = 389501  n = 1	mu =   1.72e-07
In gene HSA04060_CYTOKINE_CYTOKINE_RECEPTOR_INTERACTION the following bins exceed PROBCAP:
    COAD-AA-3984	categ 2	N = 13230   n = 9	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 13230   n = 16	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 13230   n = 14	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 13534   n = 20	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 119103  n = 32	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 121440  n = 43	mu =   3.17e-04
    COAD-AA-3554	categ 6	N = 242664  n = 1	mu =   7.59e-07
    READ-AG-A01L	categ 6	N = 258319  n = 1	mu =   3.23e-07
In gene HSA04070_PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 11594   n = 15	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 11841   n = 20	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 86564   n = 22	mu =   3.17e-04
In gene HSA04080_NEUROACTIVE_LIGAND_RECEPTOR_INTERACTION the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 22758   n = 14	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 22758   n = 14	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 22758   n = 15	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 22758   n = 12	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 23206   n = 38	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 145831  n = 37	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 147438  n = 53	mu =   3.17e-04
    COAD-AA-3554	categ 6	N = 292914  n = 1	mu =   7.59e-07
In gene HSA04110_CELL_CYCLE the following bins exceed PROBCAP:
    COAD-AA-A00N	categ 2	N = 9648    n = 3	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 9648    n = 7	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 9784    n = 14	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 85956   n = 24	mu =   3.17e-04
    COAD-AA-3980	categ 6	N = 194764  n = 1	mu =   8.55e-07
    READ-AG-3727	categ 6	N = 194764  n = 1	mu =   2.96e-07
In gene HSA04115_P53_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5003    n = 5	mu =   1.44e-03
    COAD-AA-A00F	categ 6	N = 80265   n = 1	mu =   3.45e-08
In gene HSA04120_UBIQUITIN_MEDIATED_PROTEOLYSIS the following bins exceed PROBCAP:
    READ-AG-3727	categ 6	N = 59118   n = 1	mu =   2.96e-07
In gene HSA04150_MTOR_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3552	categ 6	N = 69356   n = 1	mu =   1.38e-07
    READ-AG-4015	categ 6	N = 76736   n = 1	mu =   3.29e-07
In gene HSA04210_APOPTOSIS the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 6673    n = 18	mu =   1.44e-03
In gene HSA04310_WNT_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 17643   n = 8	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 17643   n = 7	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 17643   n = 9	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 17643   n = 14	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 18042   n = 17	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 105381  n = 24	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 107527  n = 27	mu =   3.17e-04
    READ-AG-3584	categ 6	N = 209083  n = 1	mu =   1.72e-07
In gene HSA04330_NOTCH_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 8589    n = 4	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 8893    n = 5	mu =   1.44e-03
In gene HSA04340_HEDGEHOG_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 7310    n = 5	mu =   1.44e-03
    COAD-AA-3553	categ 6	N = 69562   n = 1	mu =   1.72e-07
In gene HSA04350_TGF_BETA_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 8761    n = 9	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 8904    n = 11	mu =   1.44e-03
    COAD-AA-3553	categ 6	N = 133985  n = 1	mu =   1.72e-07
    COAD-AA-3554	categ 6	N = 133985  n = 1	mu =   7.59e-07
In gene HSA04360_AXON_GUIDANCE the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 20752   n = 1	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 20752   n = 8	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 20752   n = 7	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 20752   n = 17	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 21186   n = 37	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 139813  n = 28	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 142219  n = 27	mu =   3.17e-04
    COAD-AA-3851	categ 6	N = 297099  n = 1	mu =   3.95e-07
    COAD-AA-A00K	categ 6	N = 274867  n = 1	mu =   5.86e-07
    READ-AF-2692	categ 6	N = 274867  n = 1	mu =   1.72e-07
    READ-AG-3574	categ 6	N = 274867  n = 1	mu =   1.03e-07
    READ-AG-3883	categ 6	N = 297099  n = 1	mu =   4.60e-07
In gene HSA04370_VEGF_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 7718    n = 16	mu =   1.44e-03
    READ-AG-3727	categ 6	N = 107201  n = 1	mu =   2.96e-07
In gene HSA04510_FOCAL_ADHESION the following bins exceed PROBCAP:
    COAD-AA-3672	categ 2	N = 34731   n = 11	mu =   2.43e-04
    COAD-AA-3715	categ 2	N = 34731   n = 10	mu =   2.23e-04
    COAD-AA-3864	categ 2	N = 34731   n = 21	mu =   6.42e-04
    COAD-AA-3947	categ 2	N = 34731   n = 9	mu =   2.25e-04
    COAD-AA-3977	categ 2	N = 34731   n = 12	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 34731   n = 21	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 34731   n = 18	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 34731   n = 25	mu =   8.59e-04
    READ-AG-3892	categ 2	N = 34731   n = 3	mu =   2.46e-04
    READ-AG-A002	categ 2	N = 35482   n = 51	mu =   1.44e-03
    COAD-AA-3977	categ 3	N = 262318  n = 17	mu =   8.84e-05
    COAD-AA-3984	categ 3	N = 262318  n = 18	mu =   7.36e-05
    COAD-AA-A00N	categ 3	N = 262318  n = 13	mu =   7.55e-05
    COAD-AA-A010	categ 3	N = 262318  n = 44	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 266546  n = 68	mu =   3.17e-04
    READ-AG-A002	categ 4	N = 258492  n = 18	mu =   9.14e-05
    COAD-AA-3561	categ 6	N = 518596  n = 1	mu =   1.72e-07
    COAD-AA-A00K	categ 6	N = 518596  n = 1	mu =   5.86e-07
    READ-AG-3727	categ 6	N = 552274  n = 1	mu =   2.96e-07
In gene HSA04512_ECM_RECEPTOR_INTERACTION the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 21306   n = 8	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 21306   n = 17	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 21306   n = 14	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 21306   n = 13	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 21722   n = 23	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 166868  n = 27	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 169325  n = 45	mu =   3.17e-04
    READ-AG-A002	categ 4	N = 153758  n = 9	mu =   9.14e-05
    COAD-AA-3561	categ 6	N = 313972  n = 1	mu =   1.72e-07
    COAD-AA-A00K	categ 6	N = 313972  n = 1	mu =   5.86e-07
In gene HSA04514_CELL_ADHESION_MOLECULES the following bins exceed PROBCAP:
    COAD-AA-3984	categ 2	N = 13581   n = 8	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 13581   n = 7	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 13581   n = 15	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 13832   n = 22	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 98765   n = 38	mu =   3.17e-04
    COAD-AA-A00K	categ 6	N = 186871  n = 1	mu =   5.86e-07
    READ-AG-3883	categ 6	N = 207787  n = 2	mu =   4.60e-07
    READ-AG-A008	categ 6	N = 186871  n = 1	mu =   1.03e-07
    COAD-AA-3844	categ 7	N = 207787  n = 1	mu =   3.29e-08
In gene HSA04520_ADHERENS_JUNCTION the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 10059   n = 11	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 10400   n = 17	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 77684   n = 19	mu =   3.17e-04
In gene HSA04530_TIGHT_JUNCTION the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 18715   n = 13	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 18715   n = 13	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 18715   n = 13	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 18715   n = 17	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 19196   n = 30	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 132915  n = 18	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 135299  n = 36	mu =   3.17e-04
    COAD-AA-3548	categ 6	N = 281193  n = 1	mu =   1.03e-07
    COAD-AA-A00K	categ 6	N = 281193  n = 1	mu =   5.86e-07
In gene HSA04540_GAP_JUNCTION the following bins exceed PROBCAP:
    COAD-AA-3984	categ 2	N = 13765   n = 7	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 13765   n = 9	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 13765   n = 8	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 14133   n = 25	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 92110   n = 26	mu =   3.17e-04
In gene HSA04610_COMPLEMENT_AND_COAGULATION_CASCADES the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 6404    n = 1	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 6491    n = 14	mu =   1.44e-03
In gene HSA04612_ANTIGEN_PROCESSING_AND_PRESENTATION the following bins exceed PROBCAP:
    COAD-AA-3529	categ 6	N = 59262   n = 1	mu =   2.41e-07
    COAD-AA-3844	categ 7	N = 71336   n = 1	mu =   3.29e-08
In gene HSA04620_TOLL_LIKE_RECEPTOR_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 6879    n = 3	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 6958    n = 18	mu =   1.44e-03
In gene HSA04630_JAK_STAT_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3984	categ 2	N = 10486   n = 7	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 10486   n = 15	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 10486   n = 10	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 10682   n = 16	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 97565   n = 35	mu =   3.17e-04
    READ-AG-A01L	categ 6	N = 211100  n = 1	mu =   3.23e-07
In gene HSA04640_HEMATOPOIETIC_CELL_LINEAGE the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 6572    n = 12	mu =   1.44e-03
    COAD-AA-3844	categ 7	N = 122918  n = 1	mu =   3.29e-08
In gene HSA04650_NATURAL_KILLER_CELL_MEDIATED_CYTOTOXICITY the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 10118   n = 7	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 10407   n = 21	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 77862   n = 18	mu =   3.17e-04
    COAD-AA-3553	categ 6	N = 156179  n = 1	mu =   1.72e-07
    READ-AG-3727	categ 6	N = 165479  n = 1	mu =   2.96e-07
In gene HSA04660_T_CELL_RECEPTOR_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 8838    n = 12	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 9051    n = 23	mu =   1.44e-03
In gene HSA04662_B_CELL_RECEPTOR_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 7021    n = 16	mu =   1.44e-03
In gene HSA04664_FC_EPSILON_RI_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 6634    n = 15	mu =   1.44e-03
In gene HSA04670_LEUKOCYTE_TRANSENDOTHELIAL_MIGRATION the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 12102   n = 11	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 12432   n = 23	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 86537   n = 26	mu =   3.17e-04
    COAD-AA-3553	categ 6	N = 177406  n = 1	mu =   1.72e-07
In gene HSA04720_LONG_TERM_POTENTIATION the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 9240    n = 7	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 9556    n = 17	mu =   1.44e-03
    READ-AG-4015	categ 6	N = 144432  n = 1	mu =   3.29e-07
In gene HSA04730_LONG_TERM_DEPRESSION the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 11166   n = 9	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 11540   n = 21	mu =   1.44e-03
In gene HSA04742_TASTE_TRANSDUCTION the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 6142    n = 11	mu =   1.44e-03
In gene HSA04810_REGULATION_OF_ACTIN_CYTOSKELETON the following bins exceed PROBCAP:
    COAD-AA-3715	categ 2	N = 26358   n = 9	mu =   2.23e-04
    COAD-AA-3977	categ 2	N = 26358   n = 7	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 26358   n = 19	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 26358   n = 18	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 26358   n = 22	mu =   8.59e-04
    READ-AG-3892	categ 2	N = 26358   n = 3	mu =   2.46e-04
    READ-AG-A002	categ 2	N = 27234   n = 43	mu =   1.44e-03
    COAD-AA-3984	categ 3	N = 188730  n = 12	mu =   7.36e-05
    COAD-AA-A00N	categ 3	N = 188730  n = 9	mu =   7.55e-05
    COAD-AA-A010	categ 3	N = 188730  n = 26	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 193123  n = 55	mu =   3.17e-04
    READ-AG-A002	categ 4	N = 199039  n = 9	mu =   9.14e-05
    READ-AG-A01L	categ 6	N = 419396  n = 1	mu =   3.23e-07
In gene HSA04910_INSULIN_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 16946   n = 5	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 16946   n = 7	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 16946   n = 9	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 16946   n = 13	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 17351   n = 30	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 110579  n = 13	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 112283  n = 22	mu =   3.17e-04
    READ-AG-3727	categ 6	N = 240729  n = 1	mu =   2.96e-07
In gene HSA04912_GNRH_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-A00N	categ 2	N = 13144   n = 5	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 13144   n = 8	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 13563   n = 21	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 91788   n = 19	mu =   3.17e-04
    COAD-AA-3553	categ 6	N = 190721  n = 1	mu =   1.72e-07
    READ-AG-A01L	categ 6	N = 199860  n = 1	mu =   3.23e-07
In gene HSA04916_MELANOGENESIS the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 13601   n = 10	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 13963   n = 12	mu =   1.44e-03
In gene HSA04920_ADIPOCYTOKINE_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 8372    n = 6	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 8502    n = 13	mu =   1.44e-03
In gene HSA05120_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 6063    n = 12	mu =   1.44e-03
    COAD-AA-A00W	categ 6	N = 103713  n = 1	mu =   1.38e-07
In gene HSA05130_PATHOGENIC_ESCHERICHIA_COLI_INFECTION_EHEC the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5361    n = 11	mu =   1.44e-03
    COAD-AA-3548	categ 6	N = 71316   n = 1	mu =   1.03e-07
    COAD-AA-A00K	categ 6	N = 71316   n = 1	mu =   5.86e-07
In gene HSA05131_PATHOGENIC_ESCHERICHIA_COLI_INFECTION_EPEC the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5361    n = 11	mu =   1.44e-03
    COAD-AA-3548	categ 6	N = 71316   n = 1	mu =   1.03e-07
    COAD-AA-A00K	categ 6	N = 71316   n = 1	mu =   5.86e-07
In gene IGF1PATHWAY the following bins exceed PROBCAP:
    READ-AG-3574	categ 6	N = 32541   n = 1	mu =   1.03e-07
In gene IL5PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 8084    n = 1	mu =   3.29e-08
In gene IL7PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 38534   n = 1	mu =   1.72e-07
In gene INFLAMPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 20207   n = 1	mu =   3.29e-08
In gene INSULINPATHWAY the following bins exceed PROBCAP:
    READ-AG-3574	categ 6	N = 33636   n = 1	mu =   1.03e-07
In gene INTEGRIN_MEDIATED_CELL_ADHESION_KEGG the following bins exceed PROBCAP:
    COAD-AA-3984	categ 2	N = 12761   n = 9	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 12761   n = 3	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 12761   n = 10	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 13173   n = 19	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 98663   n = 32	mu =   3.17e-04
In gene IONPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 9984    n = 1	mu =   1.72e-07
In gene KERATAN_SULFATE_BIOSYNTHESIS the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 12181   n = 1	mu =   8.55e-07
In gene MAPKPATHWAY the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 8829    n = 6	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 9104    n = 12	mu =   1.44e-03
In gene METHIONINE_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 26590   n = 1	mu =   2.96e-07
In gene METPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 63630   n = 1	mu =   1.72e-07
    READ-AG-3574	categ 6	N = 63630   n = 1	mu =   1.03e-07
In gene MRNA_PROCESSING_REACTOME the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 9450    n = 8	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 9662    n = 8	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 72369   n = 15	mu =   3.17e-04
    COAD-AA-3854	categ 6	N = 160321  n = 1	mu =   2.96e-07
    COAD-AA-A01Z	categ 6	N = 160321  n = 1	mu =   3.62e-07
In gene MYOSINPATHWAY the following bins exceed PROBCAP:
    READ-AG-A01L	categ 6	N = 31642   n = 1	mu =   3.23e-07
In gene NDKDYNAMINPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 33995   n = 1	mu =   8.55e-07
In gene NKCELLSPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 24701   n = 1	mu =   1.72e-07
In gene NOTCHPATHWAY the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 14940   n = 1	mu =   4.60e-07
In gene NUCLEAR_RECEPTORS the following bins exceed PROBCAP:
    COAD-AA-3562	categ 6	N = 59319   n = 1	mu =   1.38e-07
In gene PAR1PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 34739   n = 1	mu =   1.72e-07
    READ-AG-A01L	categ 6	N = 36640   n = 1	mu =   3.23e-07
In gene PDGFPATHWAY the following bins exceed PROBCAP:
    READ-AG-3574	categ 6	N = 47560   n = 1	mu =   1.03e-07
In gene PEPTIDE_GPCRS the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5421    n = 13	mu =   1.44e-03
    COAD-AA-3554	categ 6	N = 72173   n = 1	mu =   7.59e-07
In gene PHOSPHATIDYLINOSITOL_SIGNALING_SYSTEM the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 10312   n = 13	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 10581   n = 18	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 76104   n = 18	mu =   3.17e-04
    COAD-AA-3554	categ 6	N = 161047  n = 1	mu =   7.59e-07
In gene PITX2PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3678	categ 6	N = 38502   n = 1	mu =   2.96e-07
In gene PPARAPATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5653    n = 10	mu =   1.44e-03
In gene PROTEASOME the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 12018   n = 1	mu =   7.59e-07
In gene PROTEASOMEPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 19772   n = 1	mu =   7.59e-07
In gene PTDINSPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 39114   n = 1	mu =   8.55e-07
In gene PURINE_METABOLISM the following bins exceed PROBCAP:
    COAD-AA-3984	categ 2	N = 12043   n = 7	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 12043   n = 12	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 12043   n = 4	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 12295   n = 17	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 90072   n = 18	mu =   3.17e-04
In gene PYK2PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 40334   n = 1	mu =   1.72e-07
In gene PYRIMIDINE_METABOLISM the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5716    n = 4	mu =   1.44e-03
In gene REELINPATHWAY the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 21098   n = 1	mu =   4.60e-07
In gene RHOPATHWAY the following bins exceed PROBCAP:
    COAD-A6-2678	categ 6	N = 69099   n = 1	mu =   2.07e-07
    READ-AG-A01L	categ 6	N = 72410   n = 1	mu =   3.23e-07
In gene RIBOSOMAL_PROTEINS the following bins exceed PROBCAP:
    READ-AG-4015	categ 6	N = 68880   n = 1	mu =   3.29e-07
In gene S1PPATHWAY the following bins exceed PROBCAP:
    COAD-AA-A00W	categ 6	N = 16332   n = 1	mu =   1.38e-07
In gene SA_BONE_MORPHOGENETIC the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 9173    n = 1	mu =   7.59e-07
In gene SA_PTEN_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 25545   n = 1	mu =   1.72e-07
In gene SIG_BCR_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 7140    n = 16	mu =   1.44e-03
In gene SIG_CHEMOTAXIS the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 6221    n = 18	mu =   1.44e-03
In gene SIG_INSULIN_RECEPTOR_PATHWAY_IN_CARDIAC_MYOCYTES the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5600    n = 17	mu =   1.44e-03
In gene SIG_PIP3_SIGNALING_IN_B_LYMPHOCYTES the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5101    n = 10	mu =   1.44e-03
In gene SIG_PIP3_SIGNALING_IN_CARDIAC_MYOCTES the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 7344    n = 11	mu =   1.44e-03
In gene SMOOTH_MUSCLE_CONTRACTION the following bins exceed PROBCAP:
    COAD-AA-3977	categ 2	N = 18497   n = 8	mu =   4.51e-04
    COAD-AA-3984	categ 2	N = 18497   n = 5	mu =   5.93e-04
    COAD-AA-A00N	categ 2	N = 18497   n = 15	mu =   7.20e-04
    COAD-AA-A010	categ 2	N = 18497   n = 21	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 19070   n = 31	mu =   1.44e-03
    COAD-AA-A010	categ 3	N = 122889  n = 17	mu =   1.86e-04
    READ-AG-A002	categ 3	N = 125861  n = 40	mu =   3.17e-04
    COAD-AA-3980	categ 6	N = 263077  n = 1	mu =   8.55e-07
In gene SPRYPATHWAY the following bins exceed PROBCAP:
    READ-AG-3574	categ 6	N = 36690   n = 1	mu =   1.03e-07
In gene ST_B_CELL_ANTIGEN_RECEPTOR the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5341    n = 11	mu =   1.44e-03
In gene ST_DICTYOSTELIUM_DISCOIDEUM_CAMP_CHEMOTAXIS_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 72170   n = 1	mu =   8.55e-07
In gene ST_DIFFERENTIATION_PATHWAY_IN_PC12_CELLS the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5333    n = 7	mu =   1.44e-03
In gene ST_FAS_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 6386    n = 9	mu =   1.44e-03
In gene ST_G_ALPHA_I_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5623    n = 14	mu =   1.44e-03
In gene ST_GA12_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A01L	categ 6	N = 43204   n = 1	mu =   3.23e-07
In gene ST_GA13_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A01L	categ 6	N = 74925   n = 1	mu =   3.23e-07
In gene ST_GAQ_PATHWAY the following bins exceed PROBCAP:
    READ-AG-A01L	categ 6	N = 70502   n = 1	mu =   3.23e-07
In gene ST_INTEGRIN_SIGNALING_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-A010	categ 2	N = 10984   n = 11	mu =   8.59e-04
    READ-AG-A002	categ 2	N = 11249   n = 21	mu =   1.44e-03
    READ-AG-A002	categ 3	N = 83634   n = 20	mu =   3.17e-04
In gene ST_JAK_STAT_PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3678	categ 6	N = 21514   n = 1	mu =   2.96e-07
In gene ST_T_CELL_SIGNAL_TRANSDUCTION the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5146    n = 14	mu =   1.44e-03
In gene STARCH_AND_SUCROSE_METABOLISM the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 4602    n = 7	mu =   1.44e-03
    READ-AG-4015	categ 6	N = 85413   n = 1	mu =   3.29e-07
In gene STATIN_PATHWAY_PHARMGKB the following bins exceed PROBCAP:
    COAD-AA-3678	categ 6	N = 38002   n = 1	mu =   2.96e-07
In gene STRIATED_MUSCLE_CONTRACTION the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 5967    n = 15	mu =   1.44e-03
In gene TCRAPATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 13843   n = 1	mu =   3.29e-08
In gene TCRPATHWAY the following bins exceed PROBCAP:
    READ-AG-3574	categ 6	N = 65034   n = 1	mu =   1.03e-07
In gene TH1TH2PATHWAY the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 17533   n = 1	mu =   3.29e-08
In gene TPOPATHWAY the following bins exceed PROBCAP:
    READ-AG-3574	categ 6	N = 41514   n = 1	mu =   1.03e-07
In gene WNT_SIGNALING the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 7924    n = 6	mu =   1.44e-03
Done
Outputting significance table: ./COADREAD.sig_genesets_2.txt
Done
Loaded COSMIC database from /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
WARNING: unknown chromosome(s):
    {''}

COSMIC analysis:  gene 1000/4522 2000/4522 3000/4522 4000/4522 
Loading refseq database...

Mutation coordinate error (line 58340): Length of alternate bases must equal length of refence bases.
19922486	19922487	A-	A-	C
Mutation coordinate error (line 61774): Length of alternate bases must equal length of refence bases.
174686609	174686611	GNG	GNG	A

Error in maflite format!  The faulty lines displayed above will not be included in output.
Ignoring the mutations listed above.
Analyzing clustered mutations
Problem with re-annotating mutations in gene A1CF: skipping.
Problem with re-annotating mutations in gene A2BP1: skipping.
Problem with re-annotating mutations in gene A2M: skipping.
Problem with re-annotating mutations in gene A2ML1: skipping.
Problem with re-annotating mutations in gene A4GALT: skipping.
Problem with re-annotating mutations in gene A4GNT: skipping.
Problem with re-annotating mutations in gene AAAS: skipping.
Problem with re-annotating mutations in gene AACS: skipping.
Problem with re-annotating mutations in gene AADAC: skipping.
Problem with re-annotating mutations in gene AADACL2: skipping.
Problem with re-annotating mutations in gene AADACL3: skipping.
Problem with re-annotating mutations in gene AADACL4: skipping.
Problem with re-annotating mutations in gene AAK1: skipping.
Problem with re-annotating mutations in gene AARS: skipping.
Problem with re-annotating mutations in gene AARS2: skipping.
Problem with re-annotating mutations in gene AARSD1: skipping.
Problem with re-annotating mutations in gene AASDH: skipping.
Problem with re-annotating mutations in gene AASDHPPT: skipping.
Problem with re-annotating mutations in gene AASS: skipping.
Problem with re-annotating mutations in gene AATF: skipping.
Problem with re-annotating mutations in gene ABAT: skipping.
Problem with re-annotating mutations in gene ABCA1: skipping.
Problem with re-annotating mutations in gene ABCA10: skipping.
Problem with re-annotating mutations in gene ABCA12: skipping.
Problem with re-annotating mutations in gene ABCA13: skipping.
Problem with re-annotating mutations in gene ABCA3: skipping.
Problem with re-annotating mutations in gene ABCA4: skipping.
Problem with re-annotating mutations in gene ABCA5: skipping.
Problem with re-annotating mutations in gene ABCA6: skipping.
Problem with re-annotating mutations in gene ABCA7: skipping.
Problem with re-annotating mutations in gene ABCA8: skipping.
Problem with re-annotating mutations in gene ABCA9: skipping.
Problem with re-annotating mutations in gene ABCB1: skipping.
Problem with re-annotating mutations in gene ABCB10: skipping.
Problem with re-annotating mutations in gene ABCB11: skipping.
Problem with re-annotating mutations in gene ABCB4: skipping.
Problem with re-annotating mutations in gene ABCB5: skipping.
Problem with re-annotating mutations in gene ABCB6: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ABCB7: skipping.
Problem with re-annotating mutations in gene ABCB8: skipping.
Problem with re-annotating mutations in gene ABCB9: skipping.
Problem with re-annotating mutations in gene ABCC1: skipping.
Problem with re-annotating mutations in gene ABCC10: skipping.
Problem with re-annotating mutations in gene ABCC11: skipping.
Problem with re-annotating mutations in gene ABCC12: skipping.
Problem with re-annotating mutations in gene ABCC2: skipping.
Problem with re-annotating mutations in gene ABCC3: skipping.
Problem with re-annotating mutations in gene ABCC4: skipping.
Problem with re-annotating mutations in gene ABCC5: skipping.
Problem with re-annotating mutations in gene ABCC6: skipping.
Problem with re-annotating mutations in gene ABCC8: skipping.
Problem with re-annotating mutations in gene ABCC9: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ABCD1: skipping.
Problem with re-annotating mutations in gene ABCD2: skipping.
Problem with re-annotating mutations in gene ABCD3: skipping.
Problem with re-annotating mutations in gene ABCD4: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene ABCF1: skipping.
Problem with re-annotating mutations in gene ABCF2: skipping.
Problem with re-annotating mutations in gene ABCF3: skipping.
Problem with re-annotating mutations in gene ABCG1: skipping.
Problem with re-annotating mutations in gene ABCG2: skipping.
Problem with re-annotating mutations in gene ABCG4: skipping.
Problem with re-annotating mutations in gene ABCG8: skipping.
Problem with re-annotating mutations in gene ABHD12: skipping.
Problem with re-annotating mutations in gene ABHD12B: skipping.
Problem with re-annotating mutations in gene ABHD13: skipping.
Problem with re-annotating mutations in gene ABHD14B: skipping.
Problem with re-annotating mutations in gene ABHD2: skipping.
Problem with re-annotating mutations in gene ABHD3: skipping.
Problem with re-annotating mutations in gene ABHD4: skipping.
Problem with re-annotating mutations in gene ABHD5: skipping.
Problem with re-annotating mutations in gene ABHD6: skipping.
Problem with re-annotating mutations in gene ABI1: skipping.
Problem with re-annotating mutations in gene ABI3: skipping.
Problem with re-annotating mutations in gene ABI3BP: skipping.
Problem with re-annotating mutations in gene ABL1: skipping.
Problem with re-annotating mutations in gene ABL2: skipping.
Problem with re-annotating mutations in gene ABLIM1: skipping.
Problem with re-annotating mutations in gene ABLIM2: skipping.
Problem with re-annotating mutations in gene ABLIM3: skipping.
Problem with re-annotating mutations in gene ABO: skipping.
Problem with re-annotating mutations in gene ABR: skipping.
Problem with re-annotating mutations in gene ABRA: skipping.
Problem with re-annotating mutations in gene ABT1: skipping.
Problem with re-annotating mutations in gene ABTB1: skipping.
Problem with re-annotating mutations in gene ACAA1: skipping.
Problem with re-annotating mutations in gene ACACA: skipping.
Problem with re-annotating mutations in gene ACACB: skipping.
Problem with re-annotating mutations in gene ACAD10: skipping.
Problem with re-annotating mutations in gene ACAD11: skipping.
100/14661 Problem with re-annotating mutations in gene ACAD9: skipping.
Problem with re-annotating mutations in gene ACADL: skipping.
Problem with re-annotating mutations in gene ACADM: skipping.
Problem with re-annotating mutations in gene ACADSB: skipping.
Problem with re-annotating mutations in gene ACAN: skipping.
Problem with re-annotating mutations in gene ACAP1: skipping.
Problem with re-annotating mutations in gene ACAP2: skipping.
Problem with re-annotating mutations in gene ACAT2: skipping.
Problem with re-annotating mutations in gene ACBD3: skipping.
Problem with re-annotating mutations in gene ACBD5: skipping.
Problem with re-annotating mutations in gene ACBD6: skipping.
Problem with re-annotating mutations in gene ACCN1: skipping.
Problem with re-annotating mutations in gene ACCN3: skipping.
Problem with re-annotating mutations in gene ACCN4: skipping.
Problem with re-annotating mutations in gene ACCN5: skipping.
Problem with re-annotating mutations in gene ACCS: skipping.
Problem with re-annotating mutations in gene ACCSL: skipping.
Problem with re-annotating mutations in gene ACE: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ACE2: skipping.
Problem with re-annotating mutations in gene ACER1: skipping.
Problem with re-annotating mutations in gene ACHE: skipping.
Problem with re-annotating mutations in gene ACIN1: skipping.
Problem with re-annotating mutations in gene ACLY: skipping.
Problem with re-annotating mutations in gene ACMSD: skipping.
Problem with re-annotating mutations in gene ACO1: skipping.
Problem with re-annotating mutations in gene ACO2: skipping.
Problem with re-annotating mutations in gene ACOT11: skipping.
Problem with re-annotating mutations in gene ACOT12: skipping.
Problem with re-annotating mutations in gene ACOT4: skipping.
Problem with re-annotating mutations in gene ACOT6: skipping.
Problem with re-annotating mutations in gene ACOT7: skipping.
Problem with re-annotating mutations in gene ACOT8: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ACOT9: skipping.
Problem with re-annotating mutations in gene ACOX1: skipping.
Problem with re-annotating mutations in gene ACOX2: skipping.
Problem with re-annotating mutations in gene ACOX3: skipping.
Problem with re-annotating mutations in gene ACOXL: skipping.
Problem with re-annotating mutations in gene ACP1: skipping.
Problem with re-annotating mutations in gene ACP2: skipping.
Problem with re-annotating mutations in gene ACPL2: skipping.
Problem with re-annotating mutations in gene ACPP: skipping.
Problem with re-annotating mutations in gene ACR: skipping.
Problem with re-annotating mutations in gene ACRBP: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ACRC: skipping.
Problem with re-annotating mutations in gene ACRV1: skipping.
Problem with re-annotating mutations in gene ACSBG1: skipping.
Problem with re-annotating mutations in gene ACSBG2: skipping.
Problem with re-annotating mutations in gene ACSL1: skipping.
Problem with re-annotating mutations in gene ACSL3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ACSL4: skipping.
Problem with re-annotating mutations in gene ACSL5: skipping.
Problem with re-annotating mutations in gene ACSL6: skipping.
Problem with re-annotating mutations in gene ACSM1: skipping.
Problem with re-annotating mutations in gene ACSM2A: skipping.
Problem with re-annotating mutations in gene ACSM2B: skipping.
Problem with re-annotating mutations in gene ACSM4: skipping.
Problem with re-annotating mutations in gene ACSM5: skipping.
Problem with re-annotating mutations in gene ACSS1: skipping.
Problem with re-annotating mutations in gene ACSS2: skipping.
Problem with re-annotating mutations in gene ACSS3: skipping.
Problem with re-annotating mutations in gene ACTA1: skipping.
Problem with re-annotating mutations in gene ACTA2: skipping.
Problem with re-annotating mutations in gene ACTB: skipping.
Problem with re-annotating mutations in gene ACTBL2: skipping.
Problem with re-annotating mutations in gene ACTG2: skipping.
Problem with re-annotating mutations in gene ACTL6A: skipping.
Problem with re-annotating mutations in gene ACTL7A: skipping.
Problem with re-annotating mutations in gene ACTL7B: skipping.
Problem with re-annotating mutations in gene ACTL8: skipping.
Problem with re-annotating mutations in gene ACTL9: skipping.
Problem with re-annotating mutations in gene ACTN1: skipping.
Problem with re-annotating mutations in gene ACTN2: skipping.
Problem with re-annotating mutations in gene ACTN3: skipping.
Problem with re-annotating mutations in gene ACTN4: skipping.
Problem with re-annotating mutations in gene ACTR1A: skipping.
Problem with re-annotating mutations in gene ACTR1B: skipping.
Problem with re-annotating mutations in gene ACTR2: skipping.
Problem with re-annotating mutations in gene ACTR3: skipping.
Problem with re-annotating mutations in gene ACTR5: skipping.
Problem with re-annotating mutations in gene ACTR8: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ACTRT1: skipping.
Problem with re-annotating mutations in gene ACVR1: skipping.
Problem with re-annotating mutations in gene ACVR1B: skipping.
200/14661 Problem with re-annotating mutations in gene ACVR1C: skipping.
Problem with re-annotating mutations in gene ACVR2A: skipping.
Problem with re-annotating mutations in gene ACVR2B: skipping.
Problem with re-annotating mutations in gene ACVRL1: skipping.
Problem with re-annotating mutations in gene ACY1: skipping.
Problem with re-annotating mutations in gene ACYP1: skipping.
Problem with re-annotating mutations in gene ADA: skipping.
Problem with re-annotating mutations in gene ADAD1: skipping.
Problem with re-annotating mutations in gene ADAM11: skipping.
Problem with re-annotating mutations in gene ADAM12: skipping.
Problem with re-annotating mutations in gene ADAM15: skipping.
Problem with re-annotating mutations in gene ADAM17: skipping.
Problem with re-annotating mutations in gene ADAM18: skipping.
Problem with re-annotating mutations in gene ADAM19: skipping.
Problem with re-annotating mutations in gene ADAM2: skipping.
Problem with re-annotating mutations in gene ADAM21: skipping.
Problem with re-annotating mutations in gene ADAM22: skipping.
Problem with re-annotating mutations in gene ADAM23: skipping.
Problem with re-annotating mutations in gene ADAM28: skipping.
Problem with re-annotating mutations in gene ADAM29: skipping.
Problem with re-annotating mutations in gene ADAM30: skipping.
Problem with re-annotating mutations in gene ADAM32: skipping.
Problem with re-annotating mutations in gene ADAM33: skipping.
Problem with re-annotating mutations in gene ADAM7: skipping.
Problem with re-annotating mutations in gene ADAM9: skipping.
Problem with re-annotating mutations in gene ADAMDEC1: skipping.
Problem with re-annotating mutations in gene ADAMTS1: skipping.
Problem with re-annotating mutations in gene ADAMTS10: skipping.
Problem with re-annotating mutations in gene ADAMTS12: skipping.
Problem with re-annotating mutations in gene ADAMTS13: skipping.
Problem with re-annotating mutations in gene ADAMTS14: skipping.
Problem with re-annotating mutations in gene ADAMTS15: skipping.
Problem with re-annotating mutations in gene ADAMTS16: skipping.
Problem with re-annotating mutations in gene ADAMTS17: skipping.
Problem with re-annotating mutations in gene ADAMTS18: skipping.
Problem with re-annotating mutations in gene ADAMTS19: skipping.
Problem with re-annotating mutations in gene ADAMTS2: skipping.
Problem with re-annotating mutations in gene ADAMTS20: skipping.
Problem with re-annotating mutations in gene ADAMTS3: skipping.
Problem with re-annotating mutations in gene ADAMTS4: skipping.
Problem with re-annotating mutations in gene ADAMTS5: skipping.
Problem with re-annotating mutations in gene ADAMTS6: skipping.
Problem with re-annotating mutations in gene ADAMTS8: skipping.
Problem with re-annotating mutations in gene ADAMTS9: skipping.
Problem with re-annotating mutations in gene ADAMTSL1: skipping.
Problem with re-annotating mutations in gene ADAMTSL2: skipping.
Problem with re-annotating mutations in gene ADAMTSL3: skipping.
Problem with re-annotating mutations in gene ADAMTSL4: skipping.
Problem with re-annotating mutations in gene ADAR: skipping.
Problem with re-annotating mutations in gene ADARB2: skipping.
Problem with re-annotating mutations in gene ADAT1: skipping.
Problem with re-annotating mutations in gene ADAT2: skipping.
Problem with re-annotating mutations in gene ADCK1: skipping.
Problem with re-annotating mutations in gene ADCK2: skipping.
Problem with re-annotating mutations in gene ADCK4: skipping.
Problem with re-annotating mutations in gene ADCY1: skipping.
Problem with re-annotating mutations in gene ADCY10: skipping.
Problem with re-annotating mutations in gene ADCY2: skipping.
Problem with re-annotating mutations in gene ADCY3: skipping.
Problem with re-annotating mutations in gene ADCY4: skipping.
Problem with re-annotating mutations in gene ADCY5: skipping.
Problem with re-annotating mutations in gene ADCY7: skipping.
Problem with re-annotating mutations in gene ADCY8: skipping.
Problem with re-annotating mutations in gene ADCY9: skipping.
Problem with re-annotating mutations in gene ADCYAP1: skipping.
Problem with re-annotating mutations in gene ADCYAP1R1: skipping.
Problem with re-annotating mutations in gene ADD1: skipping.
Problem with re-annotating mutations in gene ADD2: skipping.
Problem with re-annotating mutations in gene ADD3: skipping.
Problem with re-annotating mutations in gene ADH1B: skipping.
Problem with re-annotating mutations in gene ADH1C: skipping.
Problem with re-annotating mutations in gene ADH4: skipping.
Problem with re-annotating mutations in gene ADH6: skipping.
Problem with re-annotating mutations in gene ADH7: skipping.
Problem with re-annotating mutations in gene ADHFE1: skipping.
Problem with re-annotating mutations in gene ADIPOQ: skipping.
Problem with re-annotating mutations in gene ADIPOR2: skipping.
Problem with re-annotating mutations in gene ADM: skipping.
Problem with re-annotating mutations in gene ADNP: skipping.
Problem with re-annotating mutations in gene ADNP2: skipping.
Problem with re-annotating mutations in gene ADORA1: skipping.
Problem with re-annotating mutations in gene ADORA2A: skipping.
Problem with re-annotating mutations in gene ADORA3: skipping.
Problem with re-annotating mutations in gene ADRA1A: skipping.
300/14661 Problem with re-annotating mutations in gene ADRA1B: skipping.
Problem with re-annotating mutations in gene ADRA1D: skipping.
Problem with re-annotating mutations in gene ADRA2A: skipping.
Problem with re-annotating mutations in gene ADRB1: skipping.
Problem with re-annotating mutations in gene ADRBK2: skipping.
Problem with re-annotating mutations in gene ADSL: skipping.
Problem with re-annotating mutations in gene ADSS: skipping.
Problem with re-annotating mutations in gene AEBP1: skipping.
Problem with re-annotating mutations in gene AFAP1: skipping.
Problem with re-annotating mutations in gene AFAP1L1: skipping.
Problem with re-annotating mutations in gene AFAP1L2: skipping.
Problem with re-annotating mutations in gene AFF1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene AFF2: skipping.
Problem with re-annotating mutations in gene AFF3: skipping.
Problem with re-annotating mutations in gene AFF4: skipping.
Problem with re-annotating mutations in gene AFG3L2: skipping.
Problem with re-annotating mutations in gene AFM: skipping.
Problem with re-annotating mutations in gene AFP: skipping.
Problem with re-annotating mutations in gene AFTPH: skipping.
Problem with re-annotating mutations in gene AGA: skipping.
Problem with re-annotating mutations in gene AGAP1: skipping.
Problem with re-annotating mutations in gene AGAP11: skipping.
Problem with re-annotating mutations in gene AGAP2: skipping.
Problem with re-annotating mutations in gene AGAP3: skipping.
Problem with re-annotating mutations in gene AGBL1: skipping.
Problem with re-annotating mutations in gene AGBL2: skipping.
Problem with re-annotating mutations in gene AGBL4: skipping.
Problem with re-annotating mutations in gene AGBL5: skipping.
Problem with re-annotating mutations in gene AGFG1: skipping.
Problem with re-annotating mutations in gene AGFG2: skipping.
Problem with re-annotating mutations in gene AGGF1: skipping.
Problem with re-annotating mutations in gene AGK: skipping.
Problem with re-annotating mutations in gene AGL: skipping.
Problem with re-annotating mutations in gene AGMAT: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene AGPAT1: skipping.
Problem with re-annotating mutations in gene AGPAT3: skipping.
Problem with re-annotating mutations in gene AGPAT4: skipping.
Problem with re-annotating mutations in gene AGPAT5: skipping.
Problem with re-annotating mutations in gene AGPAT6: skipping.
Problem with re-annotating mutations in gene AGPAT9: skipping.
Problem with re-annotating mutations in gene AGPS: skipping.
Problem with re-annotating mutations in gene AGT: skipping.
Problem with re-annotating mutations in gene AGTPBP1: skipping.
Problem with re-annotating mutations in gene AGTR1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene AGTR2: skipping.
Problem with re-annotating mutations in gene AGXT2: skipping.
Problem with re-annotating mutations in gene AGXT2L1: skipping.
Problem with re-annotating mutations in gene AHCTF1: skipping.
Problem with re-annotating mutations in gene AHCY: skipping.
Problem with re-annotating mutations in gene AHCYL1: skipping.
Problem with re-annotating mutations in gene AHCYL2: skipping.
Problem with re-annotating mutations in gene AHDC1: skipping.
Problem with re-annotating mutations in gene AHI1: skipping.
Problem with re-annotating mutations in gene AHNAK: skipping.
Problem with re-annotating mutations in gene AHNAK2: skipping.
Problem with re-annotating mutations in gene AHR: skipping.
Problem with re-annotating mutations in gene AICDA: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene AIFM1: skipping.
Problem with re-annotating mutations in gene AIFM2: skipping.
Problem with re-annotating mutations in gene AIFM3: skipping.
Problem with re-annotating mutations in gene AIM1: skipping.
Problem with re-annotating mutations in gene AIMP2: skipping.
Problem with re-annotating mutations in gene AIPL1: skipping.
Problem with re-annotating mutations in gene AJAP1: skipping.
Problem with re-annotating mutations in gene AK5: skipping.
Problem with re-annotating mutations in gene AK7: skipping.
Problem with re-annotating mutations in gene AKAP10: skipping.
Problem with re-annotating mutations in gene AKAP11: skipping.
Problem with re-annotating mutations in gene AKAP12: skipping.
Problem with re-annotating mutations in gene AKAP13: skipping.
Problem with re-annotating mutations in gene AKAP3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene AKAP4: skipping.
Problem with re-annotating mutations in gene AKAP5: skipping.
Problem with re-annotating mutations in gene AKAP6: skipping.
Problem with re-annotating mutations in gene AKAP7: skipping.
Problem with re-annotating mutations in gene AKAP8: skipping.
Problem with re-annotating mutations in gene AKAP9: skipping.
Problem with re-annotating mutations in gene AKD1: skipping.
Problem with re-annotating mutations in gene AKIRIN2: skipping.
Problem with re-annotating mutations in gene AKNA: skipping.
Problem with re-annotating mutations in gene AKNAD1: skipping.
400/14661 Problem with re-annotating mutations in gene AKR1B1: skipping.
Problem with re-annotating mutations in gene AKR1B15: skipping.
Problem with re-annotating mutations in gene AKR1C2: skipping.
Problem with re-annotating mutations in gene AKR1C3: skipping.
Problem with re-annotating mutations in gene AKR1C4: skipping.
Problem with re-annotating mutations in gene AKT1: skipping.
Problem with re-annotating mutations in gene AKT1S1: skipping.
Problem with re-annotating mutations in gene AKT2: skipping.
Problem with re-annotating mutations in gene ALAS1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ALAS2: skipping.
Problem with re-annotating mutations in gene ALB: skipping.
Problem with re-annotating mutations in gene ALCAM: skipping.
Problem with re-annotating mutations in gene ALDH16A1: skipping.
Problem with re-annotating mutations in gene ALDH18A1: skipping.
Problem with re-annotating mutations in gene ALDH1A1: skipping.
Problem with re-annotating mutations in gene ALDH1A2: skipping.
Problem with re-annotating mutations in gene ALDH1A3: skipping.
Problem with re-annotating mutations in gene ALDH1B1: skipping.
Problem with re-annotating mutations in gene ALDH1L1: skipping.
Problem with re-annotating mutations in gene ALDH1L2: skipping.
Problem with re-annotating mutations in gene ALDH2: skipping.
Problem with re-annotating mutations in gene ALDH3A1: skipping.
Problem with re-annotating mutations in gene ALDH3A2: skipping.
Problem with re-annotating mutations in gene ALDH3B1: skipping.
Problem with re-annotating mutations in gene ALDH4A1: skipping.
Problem with re-annotating mutations in gene ALDH5A1: skipping.
Problem with re-annotating mutations in gene ALDH6A1: skipping.
Problem with re-annotating mutations in gene ALDH7A1: skipping.
Problem with re-annotating mutations in gene ALDH8A1: skipping.
Problem with re-annotating mutations in gene ALDOB: skipping.
Problem with re-annotating mutations in gene ALDOC: skipping.
Problem with re-annotating mutations in gene ALG10: skipping.
Problem with re-annotating mutations in gene ALG10B: skipping.
Problem with re-annotating mutations in gene ALG12: skipping.
Problem with re-annotating mutations in gene ALG2: skipping.
Problem with re-annotating mutations in gene ALG5: skipping.
Problem with re-annotating mutations in gene ALG6: skipping.
Problem with re-annotating mutations in gene ALG8: skipping.
Problem with re-annotating mutations in gene ALG9: skipping.
Problem with re-annotating mutations in gene ALK: skipping.
Problem with re-annotating mutations in gene ALKBH8: skipping.
Problem with re-annotating mutations in gene ALLC: skipping.
Problem with re-annotating mutations in gene ALMS1: skipping.
Problem with re-annotating mutations in gene ALOX12: skipping.
Problem with re-annotating mutations in gene ALOX12B: skipping.
Problem with re-annotating mutations in gene ALOX15B: skipping.
Problem with re-annotating mutations in gene ALOX5: skipping.
Problem with re-annotating mutations in gene ALOXE3: skipping.
Problem with re-annotating mutations in gene ALPI: skipping.
Problem with re-annotating mutations in gene ALPK1: skipping.
Problem with re-annotating mutations in gene ALPK2: skipping.
Problem with re-annotating mutations in gene ALPK3: skipping.
Problem with re-annotating mutations in gene ALS2: skipping.
Problem with re-annotating mutations in gene ALS2CL: skipping.
Problem with re-annotating mutations in gene ALS2CR11: skipping.
Problem with re-annotating mutations in gene ALS2CR12: skipping.
Problem with re-annotating mutations in gene ALS2CR8: skipping.
Problem with re-annotating mutations in gene AMAC1L3: skipping.
Problem with re-annotating mutations in gene AMACR: skipping.
Problem with re-annotating mutations in gene AMBN: skipping.
Problem with re-annotating mutations in gene AMBRA1: skipping.
Problem with re-annotating mutations in gene AMDHD1: skipping.
Problem with re-annotating mutations in gene AMFR: skipping.
Problem with re-annotating mutations in gene AMHR2: skipping.
Problem with re-annotating mutations in gene AMICA1: skipping.
Problem with re-annotating mutations in gene AMIGO1: skipping.
Problem with re-annotating mutations in gene AMIGO2: skipping.
Problem with re-annotating mutations in gene AMMECR1L: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene AMOT: skipping.
Problem with re-annotating mutations in gene AMOTL1: skipping.
500/14661 Problem with re-annotating mutations in gene AMPD1: skipping.
Problem with re-annotating mutations in gene AMPD2: skipping.
Problem with re-annotating mutations in gene AMPD3: skipping.
Problem with re-annotating mutations in gene AMPH: skipping.
Problem with re-annotating mutations in gene AMTN: skipping.
Problem with re-annotating mutations in gene AMY2A: skipping.
Problem with re-annotating mutations in gene AMZ1: skipping.
Problem with re-annotating mutations in gene ANAPC1: skipping.
Problem with re-annotating mutations in gene ANAPC10: skipping.
Problem with re-annotating mutations in gene ANAPC4: skipping.
Problem with re-annotating mutations in gene ANAPC5: skipping.
Problem with re-annotating mutations in gene ANAPC7: skipping.
Problem with re-annotating mutations in gene ANGEL1: skipping.
Problem with re-annotating mutations in gene ANGEL2: skipping.
Problem with re-annotating mutations in gene ANGPT1: skipping.
Problem with re-annotating mutations in gene ANGPT2: skipping.
Problem with re-annotating mutations in gene ANGPT4: skipping.
Problem with re-annotating mutations in gene ANGPTL1: skipping.
Problem with re-annotating mutations in gene ANGPTL2: skipping.
Problem with re-annotating mutations in gene ANGPTL3: skipping.
Problem with re-annotating mutations in gene ANGPTL5: skipping.
Problem with re-annotating mutations in gene ANK1: skipping.
Problem with re-annotating mutations in gene ANK2: skipping.
Problem with re-annotating mutations in gene ANK3: skipping.
Problem with re-annotating mutations in gene ANKAR: skipping.
Problem with re-annotating mutations in gene ANKDD1A: skipping.
Problem with re-annotating mutations in gene ANKFN1: skipping.
Problem with re-annotating mutations in gene ANKFY1: skipping.
Problem with re-annotating mutations in gene ANKH: skipping.
Problem with re-annotating mutations in gene ANKHD1-EIF4EBP3: skipping.
Problem with re-annotating mutations in gene ANKIB1: skipping.
Problem with re-annotating mutations in gene ANKK1: skipping.
Problem with re-annotating mutations in gene ANKLE2: skipping.
Problem with re-annotating mutations in gene ANKMY1: skipping.
Problem with re-annotating mutations in gene ANKMY2: skipping.
Problem with re-annotating mutations in gene ANKRA2: skipping.
Problem with re-annotating mutations in gene ANKRD1: skipping.
Problem with re-annotating mutations in gene ANKRD10: skipping.
Problem with re-annotating mutations in gene ANKRD11: skipping.
Problem with re-annotating mutations in gene ANKRD12: skipping.
Problem with re-annotating mutations in gene ANKRD13A: skipping.
Problem with re-annotating mutations in gene ANKRD13B: skipping.
Problem with re-annotating mutations in gene ANKRD13D: skipping.
Problem with re-annotating mutations in gene ANKRD16: skipping.
Problem with re-annotating mutations in gene ANKRD17: skipping.
Problem with re-annotating mutations in gene ANKRD24: skipping.
Problem with re-annotating mutations in gene ANKRD26: skipping.
Problem with re-annotating mutations in gene ANKRD27: skipping.
Problem with re-annotating mutations in gene ANKRD28: skipping.
Problem with re-annotating mutations in gene ANKRD29: skipping.
Problem with re-annotating mutations in gene ANKRD30A: skipping.
Problem with re-annotating mutations in gene ANKRD33: skipping.
Problem with re-annotating mutations in gene ANKRD34B: skipping.
Problem with re-annotating mutations in gene ANKRD35: skipping.
Problem with re-annotating mutations in gene ANKRD36B: skipping.
Problem with re-annotating mutations in gene ANKRD40: skipping.
Problem with re-annotating mutations in gene ANKRD44: skipping.
Problem with re-annotating mutations in gene ANKRD45: skipping.
Problem with re-annotating mutations in gene ANKRD49: skipping.
Problem with re-annotating mutations in gene ANKRD5: skipping.
Problem with re-annotating mutations in gene ANKRD50: skipping.
Problem with re-annotating mutations in gene ANKRD52: skipping.
Problem with re-annotating mutations in gene ANKRD53: skipping.
Problem with re-annotating mutations in gene ANKRD55: skipping.
Problem with re-annotating mutations in gene ANKRD56: skipping.
Problem with re-annotating mutations in gene ANKRD6: skipping.
Problem with re-annotating mutations in gene ANKRD7: skipping.
Problem with re-annotating mutations in gene ANKS1B: skipping.
Problem with re-annotating mutations in gene ANKS3: skipping.
Problem with re-annotating mutations in gene ANKS6: skipping.
Problem with re-annotating mutations in gene ANKZF1: skipping.
Problem with re-annotating mutations in gene ANLN: skipping.
Problem with re-annotating mutations in gene ANO10: skipping.
Problem with re-annotating mutations in gene ANO2: skipping.
Problem with re-annotating mutations in gene ANO3: skipping.
Problem with re-annotating mutations in gene ANO4: skipping.
Problem with re-annotating mutations in gene ANO5: skipping.
Problem with re-annotating mutations in gene ANO6: skipping.
Problem with re-annotating mutations in gene ANO7: skipping.
Problem with re-annotating mutations in gene ANP32C: skipping.
Problem with re-annotating mutations in gene ANP32D: skipping.
Problem with re-annotating mutations in gene ANPEP: skipping.
600/14661 Problem with re-annotating mutations in gene ANTXR1: skipping.
Problem with re-annotating mutations in gene ANTXR2: skipping.
Problem with re-annotating mutations in gene ANUBL1: skipping.
Problem with re-annotating mutations in gene ANXA10: skipping.
Problem with re-annotating mutations in gene ANXA11: skipping.
Problem with re-annotating mutations in gene ANXA13: skipping.
Problem with re-annotating mutations in gene ANXA2: skipping.
Problem with re-annotating mutations in gene ANXA4: skipping.
Problem with re-annotating mutations in gene ANXA6: skipping.
Problem with re-annotating mutations in gene ANXA7: skipping.
Problem with re-annotating mutations in gene AOC2: skipping.
Problem with re-annotating mutations in gene AOC3: skipping.
Problem with re-annotating mutations in gene AOX1: skipping.
Problem with re-annotating mutations in gene AP1AR: skipping.
Problem with re-annotating mutations in gene AP1G1: skipping.
Problem with re-annotating mutations in gene AP1G2: skipping.
Problem with re-annotating mutations in gene AP1M1: skipping.
Problem with re-annotating mutations in gene AP2A1: skipping.
Problem with re-annotating mutations in gene AP2A2: skipping.
Problem with re-annotating mutations in gene AP2B1: skipping.
Problem with re-annotating mutations in gene AP2M1: skipping.
Problem with re-annotating mutations in gene AP3B1: skipping.
Problem with re-annotating mutations in gene AP3B2: skipping.
Problem with re-annotating mutations in gene AP3S1: skipping.
Problem with re-annotating mutations in gene AP3S2: skipping.
Problem with re-annotating mutations in gene AP4B1: skipping.
Problem with re-annotating mutations in gene AP4E1: skipping.
Problem with re-annotating mutations in gene AP4M1: skipping.
Problem with re-annotating mutations in gene APAF1: skipping.
Problem with re-annotating mutations in gene APBA1: skipping.
Problem with re-annotating mutations in gene APBA2: skipping.
Problem with re-annotating mutations in gene APBB1: skipping.
Problem with re-annotating mutations in gene APBB1IP: skipping.
Problem with re-annotating mutations in gene APBB2: skipping.
Problem with re-annotating mutations in gene APBB3: skipping.
<APC muts: Problem with re-annotating mutations in gene APC: skipping.
Problem with re-annotating mutations in gene APCDD1: skipping.
Problem with re-annotating mutations in gene APCDD1L: skipping.
Problem with re-annotating mutations in gene APEX1: skipping.
Problem with re-annotating mutations in gene APH1B: skipping.
Problem with re-annotating mutations in gene APLF: skipping.
Problem with re-annotating mutations in gene APLNR: skipping.
Problem with re-annotating mutations in gene APLP1: skipping.
Problem with re-annotating mutations in gene APLP2: skipping.
Problem with re-annotating mutations in gene APOA1BP: skipping.
Problem with re-annotating mutations in gene APOB: skipping.
Problem with re-annotating mutations in gene APOB48R: skipping.
Problem with re-annotating mutations in gene APOBEC1: skipping.
Problem with re-annotating mutations in gene APOBEC3C: skipping.
Problem with re-annotating mutations in gene APOBEC3D: skipping.
Problem with re-annotating mutations in gene APOBEC3F: skipping.
Problem with re-annotating mutations in gene APOBEC3G: skipping.
Problem with re-annotating mutations in gene APOBEC4: skipping.
Problem with re-annotating mutations in gene APOH: skipping.
Problem with re-annotating mutations in gene APOL5: skipping.
Problem with re-annotating mutations in gene APPL1: skipping.
Problem with re-annotating mutations in gene APPL2: skipping.
Problem with re-annotating mutations in gene AQP10: skipping.
Problem with re-annotating mutations in gene AQP3: skipping.
Problem with re-annotating mutations in gene AQP4: skipping.
Problem with re-annotating mutations in gene AQP6: skipping.
700/14661 Problem with re-annotating mutations in gene AQP9: skipping.
Problem with re-annotating mutations in gene AQR: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene AR: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ARAF: skipping.
Problem with re-annotating mutations in gene ARAP1: skipping.
Problem with re-annotating mutations in gene ARAP2: skipping.
Problem with re-annotating mutations in gene ARAP3: skipping.
Problem with re-annotating mutations in gene ARC: skipping.
Problem with re-annotating mutations in gene ARCN1: skipping.
Problem with re-annotating mutations in gene ARF4: skipping.
Problem with re-annotating mutations in gene ARFGAP2: skipping.
Problem with re-annotating mutations in gene ARFGAP3: skipping.
Problem with re-annotating mutations in gene ARFGEF1: skipping.
Problem with re-annotating mutations in gene ARFGEF2: skipping.
Problem with re-annotating mutations in gene ARFIP1: skipping.
Problem with re-annotating mutations in gene ARFIP2: skipping.
Problem with re-annotating mutations in gene ARG2: skipping.
Problem with re-annotating mutations in gene ARGFX: skipping.
Problem with re-annotating mutations in gene ARHGAP10: skipping.
Problem with re-annotating mutations in gene ARHGAP11A: skipping.
Problem with re-annotating mutations in gene ARHGAP12: skipping.
Problem with re-annotating mutations in gene ARHGAP15: skipping.
Problem with re-annotating mutations in gene ARHGAP17: skipping.
Problem with re-annotating mutations in gene ARHGAP18: skipping.
Problem with re-annotating mutations in gene ARHGAP19: skipping.
Problem with re-annotating mutations in gene ARHGAP20: skipping.
Problem with re-annotating mutations in gene ARHGAP21: skipping.
Problem with re-annotating mutations in gene ARHGAP22: skipping.
Problem with re-annotating mutations in gene ARHGAP24: skipping.
Problem with re-annotating mutations in gene ARHGAP25: skipping.
Problem with re-annotating mutations in gene ARHGAP26: skipping.
Problem with re-annotating mutations in gene ARHGAP27: skipping.
Problem with re-annotating mutations in gene ARHGAP28: skipping.
Problem with re-annotating mutations in gene ARHGAP29: skipping.
Problem with re-annotating mutations in gene ARHGAP30: skipping.
Problem with re-annotating mutations in gene ARHGAP5: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ARHGAP6: skipping.
Problem with re-annotating mutations in gene ARHGAP8: skipping.
Problem with re-annotating mutations in gene ARHGAP9: skipping.
Problem with re-annotating mutations in gene ARHGDIB: skipping.
Problem with re-annotating mutations in gene ARHGEF1: skipping.
Problem with re-annotating mutations in gene ARHGEF10: skipping.
Problem with re-annotating mutations in gene ARHGEF10L: skipping.
Problem with re-annotating mutations in gene ARHGEF11: skipping.
Problem with re-annotating mutations in gene ARHGEF12: skipping.
Problem with re-annotating mutations in gene ARHGEF15: skipping.
Problem with re-annotating mutations in gene ARHGEF17: skipping.
Problem with re-annotating mutations in gene ARHGEF18: skipping.
Problem with re-annotating mutations in gene ARHGEF2: skipping.
Problem with re-annotating mutations in gene ARHGEF3: skipping.
Problem with re-annotating mutations in gene ARHGEF4: skipping.
Problem with re-annotating mutations in gene ARHGEF5: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ARHGEF6: skipping.
Problem with re-annotating mutations in gene ARHGEF7: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ARHGEF9: skipping.
Problem with re-annotating mutations in gene ARID1A: skipping.
Problem with re-annotating mutations in gene ARID1B: skipping.
Problem with re-annotating mutations in gene ARID2: skipping.
Problem with re-annotating mutations in gene ARID3B: skipping.
Problem with re-annotating mutations in gene ARID4A: skipping.
Problem with re-annotating mutations in gene ARID4B: skipping.
Problem with re-annotating mutations in gene ARID5B: skipping.
Problem with re-annotating mutations in gene ARIH1: skipping.
Problem with re-annotating mutations in gene ARL1: skipping.
Problem with re-annotating mutations in gene ARL11: skipping.
Problem with re-annotating mutations in gene ARL13B: skipping.
Problem with re-annotating mutations in gene ARL15: skipping.
Problem with re-annotating mutations in gene ARL2BP: skipping.
Problem with re-annotating mutations in gene ARL5A: skipping.
Problem with re-annotating mutations in gene ARL8B: skipping.
Problem with re-annotating mutations in gene ARMC2: skipping.
800/14661 Problem with re-annotating mutations in gene ARMC3: skipping.
Problem with re-annotating mutations in gene ARMC4: skipping.
Problem with re-annotating mutations in gene ARMC5: skipping.
Problem with re-annotating mutations in gene ARMC8: skipping.
Problem with re-annotating mutations in gene ARMC9: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ARMCX1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ARMCX2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ARMCX5: skipping.
Problem with re-annotating mutations in gene ARNT: skipping.
Problem with re-annotating mutations in gene ARNT2: skipping.
Problem with re-annotating mutations in gene ARNTL: skipping.
Problem with re-annotating mutations in gene ARNTL2: skipping.
Problem with re-annotating mutations in gene ARPC1A: skipping.
Problem with re-annotating mutations in gene ARPC1B: skipping.
Problem with re-annotating mutations in gene ARPC2: skipping.
Problem with re-annotating mutations in gene ARPC5L: skipping.
Problem with re-annotating mutations in gene ARRDC3: skipping.
Problem with re-annotating mutations in gene ARSB: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ARSD: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ARSE: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ARSF: skipping.
Problem with re-annotating mutations in gene ARSG: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ARSH: skipping.
Problem with re-annotating mutations in gene ARSI: skipping.
Problem with re-annotating mutations in gene ARSJ: skipping.
Problem with re-annotating mutations in gene ARSK: skipping.
Problem with re-annotating mutations in gene ART1: skipping.
Problem with re-annotating mutations in gene ART3: skipping.
Problem with re-annotating mutations in gene ART4: skipping.
Problem with re-annotating mutations in gene ART5: skipping.
Problem with re-annotating mutations in gene ARV1: skipping.
Problem with re-annotating mutations in gene ASAH1: skipping.
Problem with re-annotating mutations in gene ASAP1: skipping.
Problem with re-annotating mutations in gene ASAP2: skipping.
Problem with re-annotating mutations in gene ASB1: skipping.
Problem with re-annotating mutations in gene ASB15: skipping.
Problem with re-annotating mutations in gene ASB18: skipping.
Problem with re-annotating mutations in gene ASB2: skipping.
Problem with re-annotating mutations in gene ASB3: skipping.
Problem with re-annotating mutations in gene ASB4: skipping.
Problem with re-annotating mutations in gene ASB5: skipping.
Problem with re-annotating mutations in gene ASB6: skipping.
Problem with re-annotating mutations in gene ASB7: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ASB9: skipping.
Problem with re-annotating mutations in gene ASCC2: skipping.
Problem with re-annotating mutations in gene ASCC3: skipping.
Problem with re-annotating mutations in gene ASCL3: skipping.
Problem with re-annotating mutations in gene ASF1A: skipping.
Problem with re-annotating mutations in gene ASF1B: skipping.
Problem with re-annotating mutations in gene ASGR1: skipping.
Problem with re-annotating mutations in gene ASGR2: skipping.
Problem with re-annotating mutations in gene ASH1L: skipping.
Problem with re-annotating mutations in gene ASH2L: skipping.
Problem with re-annotating mutations in gene ASL: skipping.
Problem with re-annotating mutations in gene ASNSD1: skipping.
Problem with re-annotating mutations in gene ASPA: skipping.
Problem with re-annotating mutations in gene ASPH: skipping.
Problem with re-annotating mutations in gene ASPHD1: skipping.
Problem with re-annotating mutations in gene ASPHD2: skipping.
Problem with re-annotating mutations in gene ASPM: skipping.
Problem with re-annotating mutations in gene ASPRV1: skipping.
Problem with re-annotating mutations in gene ASPSCR1: skipping.
Problem with re-annotating mutations in gene ASS1: skipping.
Problem with re-annotating mutations in gene ASTE1: skipping.
Problem with re-annotating mutations in gene ASTL: skipping.
Problem with re-annotating mutations in gene ASTN1: skipping.
Problem with re-annotating mutations in gene ASTN2: skipping.
Problem with re-annotating mutations in gene ASXL1: skipping.
Problem with re-annotating mutations in gene ASXL2: skipping.
Problem with re-annotating mutations in gene ASXL3: skipping.
Problem with re-annotating mutations in gene ASZ1: skipping.
Problem with re-annotating mutations in gene ATAD1: skipping.
Problem with re-annotating mutations in gene ATAD2: skipping.
Problem with re-annotating mutations in gene ATAD2B: skipping.
900/14661 Problem with re-annotating mutations in gene ATAD5: skipping.
Problem with re-annotating mutations in gene ATCAY: skipping.
Problem with re-annotating mutations in gene ATE1: skipping.
Problem with re-annotating mutations in gene ATF1: skipping.
Problem with re-annotating mutations in gene ATF6: skipping.
Problem with re-annotating mutations in gene ATF7IP: skipping.
Problem with re-annotating mutations in gene ATF7IP2: skipping.
Problem with re-annotating mutations in gene ATG16L1: skipping.
Problem with re-annotating mutations in gene ATG2A: skipping.
Problem with re-annotating mutations in gene ATG2B: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ATG4A: skipping.
Problem with re-annotating mutations in gene ATG4C: skipping.
Problem with re-annotating mutations in gene ATG4D: skipping.
Problem with re-annotating mutations in gene ATG5: skipping.
Problem with re-annotating mutations in gene ATG9A: skipping.
Problem with re-annotating mutations in gene ATIC: skipping.
Problem with re-annotating mutations in gene ATL1: skipping.
Problem with re-annotating mutations in gene ATL2: skipping.
Problem with re-annotating mutations in gene ATM: skipping.
Problem with re-annotating mutations in gene ATMIN: skipping.
Problem with re-annotating mutations in gene ATN1: skipping.
Problem with re-annotating mutations in gene ATP10A: skipping.
Problem with re-annotating mutations in gene ATP10B: skipping.
Problem with re-annotating mutations in gene ATP10D: skipping.
Problem with re-annotating mutations in gene ATP11A: skipping.
Problem with re-annotating mutations in gene ATP11B: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ATP11C: skipping.
Problem with re-annotating mutations in gene ATP12A: skipping.
Problem with re-annotating mutations in gene ATP13A1: skipping.
Problem with re-annotating mutations in gene ATP13A2: skipping.
Problem with re-annotating mutations in gene ATP13A3: skipping.
Problem with re-annotating mutations in gene ATP13A4: skipping.
Problem with re-annotating mutations in gene ATP13A5: skipping.
Problem with re-annotating mutations in gene ATP1A1: skipping.
Problem with re-annotating mutations in gene ATP1A2: skipping.
Problem with re-annotating mutations in gene ATP1A3: skipping.
Problem with re-annotating mutations in gene ATP1A4: skipping.
Problem with re-annotating mutations in gene ATP1B2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ATP1B4: skipping.
Problem with re-annotating mutations in gene ATP2A1: skipping.
Problem with re-annotating mutations in gene ATP2A2: skipping.
Problem with re-annotating mutations in gene ATP2A3: skipping.
Problem with re-annotating mutations in gene ATP2B1: skipping.
Problem with re-annotating mutations in gene ATP2B2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ATP2B3: skipping.
Problem with re-annotating mutations in gene ATP2B4: skipping.
Problem with re-annotating mutations in gene ATP2C1: skipping.
Problem with re-annotating mutations in gene ATP2C2: skipping.
Problem with re-annotating mutations in gene ATP4A: skipping.
Problem with re-annotating mutations in gene ATP5A1: skipping.
Problem with re-annotating mutations in gene ATP5B: skipping.
Problem with re-annotating mutations in gene ATP5C1: skipping.
Problem with re-annotating mutations in gene ATP5L: skipping.
Problem with re-annotating mutations in gene ATP5O: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ATP6AP1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ATP6AP2: skipping.
Problem with re-annotating mutations in gene ATP6V0A1: skipping.
Problem with re-annotating mutations in gene ATP6V0A2: skipping.
Problem with re-annotating mutations in gene ATP6V0A4: skipping.
Problem with re-annotating mutations in gene ATP6V0D1: skipping.
Problem with re-annotating mutations in gene ATP6V0D2: skipping.
Problem with re-annotating mutations in gene ATP6V1A: skipping.
Problem with re-annotating mutations in gene ATP6V1B1: skipping.
Problem with re-annotating mutations in gene ATP6V1B2: skipping.
Problem with re-annotating mutations in gene ATP6V1C1: skipping.
Problem with re-annotating mutations in gene ATP6V1C2: skipping.
Problem with re-annotating mutations in gene ATP6V1E2: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene ATP6V1G2: skipping.
Problem with re-annotating mutations in gene ATP6V1G3: skipping.
Problem with re-annotating mutations in gene ATP6V1H: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ATP7A: skipping.
Problem with re-annotating mutations in gene ATP7B: skipping.
Problem with re-annotating mutations in gene ATP8A1: skipping.
1000/14661 Problem with re-annotating mutations in gene ATP8A2: skipping.
Problem with re-annotating mutations in gene ATP8B1: skipping.
Problem with re-annotating mutations in gene ATP8B2: skipping.
Problem with re-annotating mutations in gene ATP8B4: skipping.
Problem with re-annotating mutations in gene ATP9A: skipping.
Problem with re-annotating mutations in gene ATP9B: skipping.
Problem with re-annotating mutations in gene ATPAF1: skipping.
Problem with re-annotating mutations in gene ATR: skipping.
Problem with re-annotating mutations in gene ATRN: skipping.
Problem with re-annotating mutations in gene ATRNL1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ATRX: skipping.
Problem with re-annotating mutations in gene ATXN1: skipping.
Problem with re-annotating mutations in gene ATXN2: skipping.
Problem with re-annotating mutations in gene ATXN2L: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ATXN3L: skipping.
Problem with re-annotating mutations in gene ATXN7: skipping.
Problem with re-annotating mutations in gene ATXN7L2: skipping.
Problem with re-annotating mutations in gene AURKA: skipping.
Problem with re-annotating mutations in gene AURKC: skipping.
Problem with re-annotating mutations in gene AUTS2: skipping.
Problem with re-annotating mutations in gene AVIL: skipping.
Problem with re-annotating mutations in gene AVL9: skipping.
Problem with re-annotating mutations in gene AVPI1: skipping.
Problem with re-annotating mutations in gene AVPR1A: skipping.
Problem with re-annotating mutations in gene AVPR1B: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene AVPR2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene AWAT1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene AWAT2: skipping.
Problem with re-annotating mutations in gene AXIN1: skipping.
Problem with re-annotating mutations in gene AXIN2: skipping.
Problem with re-annotating mutations in gene AXL: skipping.
Problem with re-annotating mutations in gene AZGP1: skipping.
Problem with re-annotating mutations in gene AZIN1: skipping.
Problem with re-annotating mutations in gene B2M: skipping.
Problem with re-annotating mutations in gene B3GALNT1: skipping.
Problem with re-annotating mutations in gene B3GALT2: skipping.
Problem with re-annotating mutations in gene B3GALT5: skipping.
Problem with re-annotating mutations in gene B3GALTL: skipping.
Problem with re-annotating mutations in gene B3GNT1: skipping.
Problem with re-annotating mutations in gene B3GNT2: skipping.
Problem with re-annotating mutations in gene B3GNT7: skipping.
Problem with re-annotating mutations in gene B3GNT9: skipping.
Problem with re-annotating mutations in gene B4GALNT1: skipping.
Problem with re-annotating mutations in gene B4GALNT2: skipping.
Problem with re-annotating mutations in gene B4GALT1: skipping.
Problem with re-annotating mutations in gene B4GALT2: skipping.
Problem with re-annotating mutations in gene B4GALT3: skipping.
Problem with re-annotating mutations in gene B4GALT5: skipping.
Problem with re-annotating mutations in gene B4GALT6: skipping.
Problem with re-annotating mutations in gene B9D1: skipping.
Problem with re-annotating mutations in gene BAALC: skipping.
Problem with re-annotating mutations in gene BAAT: skipping.
Problem with re-annotating mutations in gene BACE2: skipping.
Problem with re-annotating mutations in gene BACH1: skipping.
Problem with re-annotating mutations in gene BACH2: skipping.
Problem with re-annotating mutations in gene BAG1: skipping.
Problem with re-annotating mutations in gene BAG4: skipping.
Problem with re-annotating mutations in gene BAG5: skipping.
Problem with re-annotating mutations in gene BAHD1: skipping.
Problem with re-annotating mutations in gene BAI1: skipping.
Problem with re-annotating mutations in gene BAI2: skipping.
Problem with re-annotating mutations in gene BAI3: skipping.
Problem with re-annotating mutations in gene BAIAP2L1: skipping.
Problem with re-annotating mutations in gene BAMBI: skipping.
Problem with re-annotating mutations in gene BANK1: skipping.
Problem with re-annotating mutations in gene BANP: skipping.
Problem with re-annotating mutations in gene BAP1: skipping.
1100/14661 Problem with re-annotating mutations in gene BARD1: skipping.
Problem with re-annotating mutations in gene BARHL2: skipping.
Problem with re-annotating mutations in gene BARX2: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene BAT2: skipping.
WARNING: unknown chromosome(s):
    'chr6_qbl_hap2'

Problem with re-annotating mutations in gene BAT3: skipping.
Problem with re-annotating mutations in gene BAT4: skipping.
Problem with re-annotating mutations in gene BAT5: skipping.
Problem with re-annotating mutations in gene BATF2: skipping.
Problem with re-annotating mutations in gene BAZ1A: skipping.
Problem with re-annotating mutations in gene BAZ1B: skipping.
Problem with re-annotating mutations in gene BAZ2A: skipping.
Problem with re-annotating mutations in gene BAZ2B: skipping.
Problem with re-annotating mutations in gene BBOX1: skipping.
Problem with re-annotating mutations in gene BBS1: skipping.
Problem with re-annotating mutations in gene BBS10: skipping.
Problem with re-annotating mutations in gene BBS12: skipping.
Problem with re-annotating mutations in gene BBS2: skipping.
Problem with re-annotating mutations in gene BBS4: skipping.
Problem with re-annotating mutations in gene BBS7: skipping.
Problem with re-annotating mutations in gene BBS9: skipping.
Problem with re-annotating mutations in gene BBX: skipping.
Problem with re-annotating mutations in gene BCAM: skipping.
Problem with re-annotating mutations in gene BCAN: skipping.
Problem with re-annotating mutations in gene BCAP29: skipping.
Problem with re-annotating mutations in gene BCAR3: skipping.
Problem with re-annotating mutations in gene BCAS1: skipping.
Problem with re-annotating mutations in gene BCAS2: skipping.
Problem with re-annotating mutations in gene BCAS3: skipping.
Problem with re-annotating mutations in gene BCAS4: skipping.
Problem with re-annotating mutations in gene BCCIP: skipping.
Problem with re-annotating mutations in gene BCDIN3D: skipping.
Problem with re-annotating mutations in gene BCHE: skipping.
Problem with re-annotating mutations in gene BCKDHA: skipping.
Problem with re-annotating mutations in gene BCKDK: skipping.
Problem with re-annotating mutations in gene BCL10: skipping.
Problem with re-annotating mutations in gene BCL11A: skipping.
Problem with re-annotating mutations in gene BCL2A1: skipping.
Problem with re-annotating mutations in gene BCL2L11: skipping.
Problem with re-annotating mutations in gene BCL2L13: skipping.
Problem with re-annotating mutations in gene BCL2L14: skipping.
Problem with re-annotating mutations in gene BCL6: skipping.
Problem with re-annotating mutations in gene BCL7A: skipping.
Problem with re-annotating mutations in gene BCL9: skipping.
Problem with re-annotating mutations in gene BCL9L: skipping.
Problem with re-annotating mutations in gene BCLAF1: skipping.
Problem with re-annotating mutations in gene BCMO1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene BCOR: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene BCORL1: skipping.
Problem with re-annotating mutations in gene BCR: skipping.
Problem with re-annotating mutations in gene BCS1L: skipping.
Problem with re-annotating mutations in gene BDKRB2: skipping.
Problem with re-annotating mutations in gene BDP1: skipping.
Problem with re-annotating mutations in gene BECN1: skipping.
Problem with re-annotating mutations in gene BEGAIN: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene BEND2: skipping.
Problem with re-annotating mutations in gene BEND3: skipping.
Problem with re-annotating mutations in gene BEND4: skipping.
Problem with re-annotating mutations in gene BEND5: skipping.
Problem with re-annotating mutations in gene BEND6: skipping.
Problem with re-annotating mutations in gene BEND7: skipping.
Problem with re-annotating mutations in gene BEST1: skipping.
Problem with re-annotating mutations in gene BEST2: skipping.
Problem with re-annotating mutations in gene BEST3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene BEX5: skipping.
Problem with re-annotating mutations in gene BFSP1: skipping.
Problem with re-annotating mutations in gene BFSP2: skipping.
Problem with re-annotating mutations in gene BGLAP: skipping.
Problem with re-annotating mutations in gene BHMT: skipping.
Problem with re-annotating mutations in gene BHMT2: skipping.
Problem with re-annotating mutations in gene BICC1: skipping.
Problem with re-annotating mutations in gene BICD1: skipping.
1200/14661 Problem with re-annotating mutations in gene BICD2: skipping.
Problem with re-annotating mutations in gene BIN1: skipping.
Problem with re-annotating mutations in gene BIN2: skipping.
Problem with re-annotating mutations in gene BIRC2: skipping.
Problem with re-annotating mutations in gene BIRC3: skipping.
Problem with re-annotating mutations in gene BIRC6: skipping.
Problem with re-annotating mutations in gene BLID: skipping.
Problem with re-annotating mutations in gene BLK: skipping.
Problem with re-annotating mutations in gene BLM: skipping.
Problem with re-annotating mutations in gene BLMH: skipping.
Problem with re-annotating mutations in gene BLVRA: skipping.
Problem with re-annotating mutations in gene BLVRB: skipping.
Problem with re-annotating mutations in gene BLZF1: skipping.
Problem with re-annotating mutations in gene BMI1: skipping.
Problem with re-annotating mutations in gene BMP1: skipping.
Problem with re-annotating mutations in gene BMP10: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene BMP15: skipping.
Problem with re-annotating mutations in gene BMP2K: skipping.
Problem with re-annotating mutations in gene BMP3: skipping.
Problem with re-annotating mutations in gene BMP4: skipping.
Problem with re-annotating mutations in gene BMP5: skipping.
Problem with re-annotating mutations in gene BMP6: skipping.
Problem with re-annotating mutations in gene BMP7: skipping.
Problem with re-annotating mutations in gene BMPER: skipping.
Problem with re-annotating mutations in gene BMPR1A: skipping.
Problem with re-annotating mutations in gene BMPR1B: skipping.
Problem with re-annotating mutations in gene BMPR2: skipping.
Problem with re-annotating mutations in gene BMS1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene BMX: skipping.
Problem with re-annotating mutations in gene BNC1: skipping.
Problem with re-annotating mutations in gene BNC2: skipping.
Problem with re-annotating mutations in gene BNIP2: skipping.
Problem with re-annotating mutations in gene BNIP3L: skipping.
Problem with re-annotating mutations in gene BOC: skipping.
Problem with re-annotating mutations in gene BOD1: skipping.
Problem with re-annotating mutations in gene BOD1L: skipping.
Problem with re-annotating mutations in gene BPI: skipping.
Problem with re-annotating mutations in gene BPIL2: skipping.
Problem with re-annotating mutations in gene BPIL3: skipping.
Problem with re-annotating mutations in gene BPTF: skipping.
Problem with re-annotating mutations in gene BRAF: skipping.
Problem with re-annotating mutations in gene BRAP: skipping.
Problem with re-annotating mutations in gene BRCA1: skipping.
Problem with re-annotating mutations in gene BRCA2: skipping.
Problem with re-annotating mutations in gene BRD1: skipping.
Problem with re-annotating mutations in gene BRD2: skipping.
Problem with re-annotating mutations in gene BRD3: skipping.
Problem with re-annotating mutations in gene BRD4: skipping.
Problem with re-annotating mutations in gene BRD7: skipping.
Problem with re-annotating mutations in gene BRD8: skipping.
Problem with re-annotating mutations in gene BRD9: skipping.
Problem with re-annotating mutations in gene BRDT: skipping.
Problem with re-annotating mutations in gene BRE: skipping.
Problem with re-annotating mutations in gene BRF1: skipping.
Problem with re-annotating mutations in gene BRF2: skipping.
Problem with re-annotating mutations in gene BRIP1: skipping.
Problem with re-annotating mutations in gene BRP44: skipping.
Problem with re-annotating mutations in gene BRPF1: skipping.
Problem with re-annotating mutations in gene BRPF3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene BRS3: skipping.
Problem with re-annotating mutations in gene BRSK1: skipping.
Problem with re-annotating mutations in gene BRWD1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene BRWD3: skipping.
Problem with re-annotating mutations in gene BSN: skipping.
Problem with re-annotating mutations in gene BSX: skipping.
Problem with re-annotating mutations in gene BTAF1: skipping.
Problem with re-annotating mutations in gene BTBD1: skipping.
Problem with re-annotating mutations in gene BTBD10: skipping.
Problem with re-annotating mutations in gene BTBD11: skipping.
Problem with re-annotating mutations in gene BTBD12: skipping.
Problem with re-annotating mutations in gene BTBD16: skipping.
Problem with re-annotating mutations in gene BTBD3: skipping.
Problem with re-annotating mutations in gene BTBD7: skipping.
1300/14661 Problem with re-annotating mutations in gene BTBD9: skipping.
Problem with re-annotating mutations in gene BTC: skipping.
Problem with re-annotating mutations in gene BTD: skipping.
Problem with re-annotating mutations in gene BTF3: skipping.
Problem with re-annotating mutations in gene BTG3: skipping.
Problem with re-annotating mutations in gene BTG4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene BTK: skipping.
Problem with re-annotating mutations in gene BTN1A1: skipping.
Problem with re-annotating mutations in gene BTN2A1: skipping.
Problem with re-annotating mutations in gene BTN2A2: skipping.
Problem with re-annotating mutations in gene BTN3A1: skipping.
Problem with re-annotating mutations in gene BTN3A2: skipping.
Problem with re-annotating mutations in gene BTN3A3: skipping.
WARNING: unknown chromosome(s):
    'chr6_qbl_hap2'

Problem with re-annotating mutations in gene BTNL2: skipping.
Problem with re-annotating mutations in gene BTNL8: skipping.
Problem with re-annotating mutations in gene BTRC: skipping.
Problem with re-annotating mutations in gene BUB1: skipping.
Problem with re-annotating mutations in gene BUB1B: skipping.
Problem with re-annotating mutations in gene BUB3: skipping.
Problem with re-annotating mutations in gene BUD13: skipping.
Problem with re-annotating mutations in gene BVES: skipping.
Problem with re-annotating mutations in gene BZRAP1: skipping.
Problem with re-annotating mutations in gene BZW2: skipping.
Problem with re-annotating mutations in gene C10orf11: skipping.
Problem with re-annotating mutations in gene C10orf118: skipping.
Problem with re-annotating mutations in gene C10orf119: skipping.
Problem with re-annotating mutations in gene C10orf12: skipping.
Problem with re-annotating mutations in gene C10orf120: skipping.
Problem with re-annotating mutations in gene C10orf137: skipping.
Problem with re-annotating mutations in gene C10orf140: skipping.
Problem with re-annotating mutations in gene C10orf18: skipping.
Problem with re-annotating mutations in gene C10orf2: skipping.
Problem with re-annotating mutations in gene C10orf28: skipping.
Problem with re-annotating mutations in gene C10orf58: skipping.
Problem with re-annotating mutations in gene C10orf68: skipping.
Problem with re-annotating mutations in gene C10orf71: skipping.
Problem with re-annotating mutations in gene C10orf72: skipping.
Problem with re-annotating mutations in gene C10orf76: skipping.
Problem with re-annotating mutations in gene C10orf79: skipping.
Problem with re-annotating mutations in gene C10orf81: skipping.
Problem with re-annotating mutations in gene C10orf84: skipping.
Problem with re-annotating mutations in gene C10orf88: skipping.
Problem with re-annotating mutations in gene C10orf90: skipping.
Problem with re-annotating mutations in gene C10orf93: skipping.
Problem with re-annotating mutations in gene C10orf96: skipping.
Problem with re-annotating mutations in gene C11orf16: skipping.
Problem with re-annotating mutations in gene C11orf17: skipping.
Problem with re-annotating mutations in gene C11orf24: skipping.
Problem with re-annotating mutations in gene C11orf30: skipping.
Problem with re-annotating mutations in gene C11orf40: skipping.
Problem with re-annotating mutations in gene C11orf41: skipping.
Problem with re-annotating mutations in gene C11orf53: skipping.
Problem with re-annotating mutations in gene C11orf57: skipping.
Problem with re-annotating mutations in gene C11orf63: skipping.
Problem with re-annotating mutations in gene C11orf65: skipping.
Problem with re-annotating mutations in gene C11orf66: skipping.
Problem with re-annotating mutations in gene C11orf80: skipping.
Problem with re-annotating mutations in gene C11orf82: skipping.
Problem with re-annotating mutations in gene C11orf87: skipping.
Problem with re-annotating mutations in gene C11orf9: skipping.
Problem with re-annotating mutations in gene C12orf11: skipping.
Problem with re-annotating mutations in gene C12orf12: skipping.
Problem with re-annotating mutations in gene C12orf24: skipping.
Problem with re-annotating mutations in gene C12orf26: skipping.
Problem with re-annotating mutations in gene C12orf29: skipping.
Problem with re-annotating mutations in gene C12orf35: skipping.
Problem with re-annotating mutations in gene C12orf4: skipping.
Problem with re-annotating mutations in gene C12orf40: skipping.
Problem with re-annotating mutations in gene C12orf41: skipping.
Problem with re-annotating mutations in gene C12orf42: skipping.
Problem with re-annotating mutations in gene C12orf48: skipping.
Problem with re-annotating mutations in gene C12orf50: skipping.
1400/14661 Problem with re-annotating mutations in gene C12orf51: skipping.
Problem with re-annotating mutations in gene C12orf52: skipping.
Problem with re-annotating mutations in gene C12orf54: skipping.
Problem with re-annotating mutations in gene C12orf56: skipping.
Problem with re-annotating mutations in gene C12orf59: skipping.
Problem with re-annotating mutations in gene C12orf63: skipping.
Problem with re-annotating mutations in gene C13orf16: skipping.
Problem with re-annotating mutations in gene C13orf18: skipping.
Problem with re-annotating mutations in gene C13orf23: skipping.
Problem with re-annotating mutations in gene C13orf27: skipping.
Problem with re-annotating mutations in gene C13orf28: skipping.
Problem with re-annotating mutations in gene C13orf31: skipping.
Problem with re-annotating mutations in gene C13orf33: skipping.
Problem with re-annotating mutations in gene C13orf34: skipping.
Problem with re-annotating mutations in gene C13orf36: skipping.
Problem with re-annotating mutations in gene C13orf39: skipping.
Problem with re-annotating mutations in gene C14orf101: skipping.
Problem with re-annotating mutations in gene C14orf102: skipping.
Problem with re-annotating mutations in gene C14orf104: skipping.
Problem with re-annotating mutations in gene C14orf105: skipping.
Problem with re-annotating mutations in gene C14orf106: skipping.
Problem with re-annotating mutations in gene C14orf118: skipping.
Problem with re-annotating mutations in gene C14orf126: skipping.
Problem with re-annotating mutations in gene C14orf135: skipping.
Problem with re-annotating mutations in gene C14orf145: skipping.
Problem with re-annotating mutations in gene C14orf148: skipping.
Problem with re-annotating mutations in gene C14orf159: skipping.
Problem with re-annotating mutations in gene C14orf166: skipping.
Problem with re-annotating mutations in gene C14orf166B: skipping.
Problem with re-annotating mutations in gene C14orf182: skipping.
Problem with re-annotating mutations in gene C14orf183: skipping.
Problem with re-annotating mutations in gene C14orf21: skipping.
Problem with re-annotating mutations in gene C14orf28: skipping.
Problem with re-annotating mutations in gene C14orf37: skipping.
Problem with re-annotating mutations in gene C14orf39: skipping.
Problem with re-annotating mutations in gene C14orf43: skipping.
Problem with re-annotating mutations in gene C14orf49: skipping.
Problem with re-annotating mutations in gene C14orf50: skipping.
Problem with re-annotating mutations in gene C14orf93: skipping.
Problem with re-annotating mutations in gene C15orf2: skipping.
Problem with re-annotating mutations in gene C15orf23: skipping.
Problem with re-annotating mutations in gene C15orf26: skipping.
Problem with re-annotating mutations in gene C15orf33: skipping.
Problem with re-annotating mutations in gene C15orf39: skipping.
Problem with re-annotating mutations in gene C15orf40: skipping.
Problem with re-annotating mutations in gene C15orf41: skipping.
Problem with re-annotating mutations in gene C15orf42: skipping.
Problem with re-annotating mutations in gene C15orf52: skipping.
Problem with re-annotating mutations in gene C15orf55: skipping.
Problem with re-annotating mutations in gene C15orf57: skipping.
Problem with re-annotating mutations in gene C15orf59: skipping.
Problem with re-annotating mutations in gene C15orf60: skipping.
Problem with re-annotating mutations in gene C16orf45: skipping.
Problem with re-annotating mutations in gene C16orf46: skipping.
Problem with re-annotating mutations in gene C16orf48: skipping.
Problem with re-annotating mutations in gene C16orf58: skipping.
Problem with re-annotating mutations in gene C16orf62: skipping.
Problem with re-annotating mutations in gene C16orf68: skipping.
Problem with re-annotating mutations in gene C16orf71: skipping.
Problem with re-annotating mutations in gene C16orf78: skipping.
Problem with re-annotating mutations in gene C16orf87: skipping.
Problem with re-annotating mutations in gene C16orf88: skipping.
Problem with re-annotating mutations in gene C17orf101: skipping.
Problem with re-annotating mutations in gene C17orf104: skipping.
1500/14661 Problem with re-annotating mutations in gene C17orf28: skipping.
Problem with re-annotating mutations in gene C17orf42: skipping.
Problem with re-annotating mutations in gene C17orf46: skipping.
Problem with re-annotating mutations in gene C17orf47: skipping.
Problem with re-annotating mutations in gene C17orf48: skipping.
Problem with re-annotating mutations in gene C17orf53: skipping.
Problem with re-annotating mutations in gene C17orf57: skipping.
Problem with re-annotating mutations in gene C17orf59: skipping.
Problem with re-annotating mutations in gene C17orf62: skipping.
Problem with re-annotating mutations in gene C17orf63: skipping.
Problem with re-annotating mutations in gene C17orf66: skipping.
Problem with re-annotating mutations in gene C17orf71: skipping.
Problem with re-annotating mutations in gene C17orf74: skipping.
Problem with re-annotating mutations in gene C17orf75: skipping.
Problem with re-annotating mutations in gene C17orf95: skipping.
Problem with re-annotating mutations in gene C17orf97: skipping.
Problem with re-annotating mutations in gene C18orf19: skipping.
Problem with re-annotating mutations in gene C18orf34: skipping.
Problem with re-annotating mutations in gene C18orf54: skipping.
Problem with re-annotating mutations in gene C18orf8: skipping.
Problem with re-annotating mutations in gene C19orf18: skipping.
Problem with re-annotating mutations in gene C19orf2: skipping.
Problem with re-annotating mutations in gene C19orf21: skipping.
Problem with re-annotating mutations in gene C19orf29: skipping.
Problem with re-annotating mutations in gene C19orf40: skipping.
Problem with re-annotating mutations in gene C19orf43: skipping.
Problem with re-annotating mutations in gene C19orf44: skipping.
Problem with re-annotating mutations in gene C19orf55: skipping.
Problem with re-annotating mutations in gene C19orf61: skipping.
Problem with re-annotating mutations in gene C19orf62: skipping.
Problem with re-annotating mutations in gene C19orf75: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene C1GALT1C1: skipping.
Problem with re-annotating mutations in gene C1QC: skipping.
Problem with re-annotating mutations in gene C1QTNF1: skipping.
Problem with re-annotating mutations in gene C1QTNF9B: skipping.
Problem with re-annotating mutations in gene C1R: skipping.
Problem with re-annotating mutations in gene C1RL: skipping.
Problem with re-annotating mutations in gene C1S: skipping.
Problem with re-annotating mutations in gene C1orf100: skipping.
Problem with re-annotating mutations in gene C1orf101: skipping.
Problem with re-annotating mutations in gene C1orf103: skipping.
Problem with re-annotating mutations in gene C1orf104: skipping.
Problem with re-annotating mutations in gene C1orf107: skipping.
Problem with re-annotating mutations in gene C1orf112: skipping.
Problem with re-annotating mutations in gene C1orf113: skipping.
Problem with re-annotating mutations in gene C1orf114: skipping.
Problem with re-annotating mutations in gene C1orf116: skipping.
Problem with re-annotating mutations in gene C1orf124: skipping.
Problem with re-annotating mutations in gene C1orf125: skipping.
Problem with re-annotating mutations in gene C1orf127: skipping.
Problem with re-annotating mutations in gene C1orf128: skipping.
Problem with re-annotating mutations in gene C1orf129: skipping.
Problem with re-annotating mutations in gene C1orf130: skipping.
Problem with re-annotating mutations in gene C1orf131: skipping.
Problem with re-annotating mutations in gene C1orf135: skipping.
Problem with re-annotating mutations in gene C1orf14: skipping.
Problem with re-annotating mutations in gene C1orf141: skipping.
Problem with re-annotating mutations in gene C1orf150: skipping.
Problem with re-annotating mutations in gene C1orf156: skipping.
1600/14661 Problem with re-annotating mutations in gene C1orf168: skipping.
Problem with re-annotating mutations in gene C1orf173: skipping.
Problem with re-annotating mutations in gene C1orf175: skipping.
Problem with re-annotating mutations in gene C1orf177: skipping.
Problem with re-annotating mutations in gene C1orf183: skipping.
Problem with re-annotating mutations in gene C1orf187: skipping.
Problem with re-annotating mutations in gene C1orf189: skipping.
Problem with re-annotating mutations in gene C1orf192: skipping.
Problem with re-annotating mutations in gene C1orf194: skipping.
Problem with re-annotating mutations in gene C1orf198: skipping.
Problem with re-annotating mutations in gene C1orf226: skipping.
Problem with re-annotating mutations in gene C1orf25: skipping.
Problem with re-annotating mutations in gene C1orf26: skipping.
Problem with re-annotating mutations in gene C1orf27: skipping.
Problem with re-annotating mutations in gene C1orf38: skipping.
Problem with re-annotating mutations in gene C1orf43: skipping.
Problem with re-annotating mutations in gene C1orf49: skipping.
Problem with re-annotating mutations in gene C1orf50: skipping.
Problem with re-annotating mutations in gene C1orf51: skipping.
Problem with re-annotating mutations in gene C1orf52: skipping.
Problem with re-annotating mutations in gene C1orf55: skipping.
Problem with re-annotating mutations in gene C1orf57: skipping.
Problem with re-annotating mutations in gene C1orf58: skipping.
Problem with re-annotating mutations in gene C1orf61: skipping.
Problem with re-annotating mutations in gene C1orf65: skipping.
Problem with re-annotating mutations in gene C1orf66: skipping.
Problem with re-annotating mutations in gene C1orf74: skipping.
Problem with re-annotating mutations in gene C1orf77: skipping.
Problem with re-annotating mutations in gene C1orf87: skipping.
Problem with re-annotating mutations in gene C1orf88: skipping.
Problem with re-annotating mutations in gene C1orf89: skipping.
Problem with re-annotating mutations in gene C1orf9: skipping.
Problem with re-annotating mutations in gene C1orf92: skipping.
Problem with re-annotating mutations in gene C1orf94: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene C2: skipping.
Problem with re-annotating mutations in gene C20orf103: skipping.
Problem with re-annotating mutations in gene C20orf107: skipping.
Problem with re-annotating mutations in gene C20orf111: skipping.
Problem with re-annotating mutations in gene C20orf112: skipping.
Problem with re-annotating mutations in gene C20orf114: skipping.
Problem with re-annotating mutations in gene C20orf117: skipping.
Problem with re-annotating mutations in gene C20orf12: skipping.
Problem with re-annotating mutations in gene C20orf132: skipping.
Problem with re-annotating mutations in gene C20orf151: skipping.
Problem with re-annotating mutations in gene C20orf160: skipping.
Problem with re-annotating mutations in gene C20orf165: skipping.
Problem with re-annotating mutations in gene C20orf177: skipping.
Problem with re-annotating mutations in gene C20orf185: skipping.
Problem with re-annotating mutations in gene C20orf186: skipping.
Problem with re-annotating mutations in gene C20orf194: skipping.
Problem with re-annotating mutations in gene C20orf195: skipping.
Problem with re-annotating mutations in gene C20orf197: skipping.
Problem with re-annotating mutations in gene C20orf26: skipping.
Problem with re-annotating mutations in gene C20orf3: skipping.
Problem with re-annotating mutations in gene C20orf4: skipping.
Problem with re-annotating mutations in gene C20orf54: skipping.
Problem with re-annotating mutations in gene C20orf7: skipping.
Problem with re-annotating mutations in gene C20orf71: skipping.
Problem with re-annotating mutations in gene C20orf72: skipping.
Problem with re-annotating mutations in gene C20orf85: skipping.
Problem with re-annotating mutations in gene C20orf94: skipping.
Problem with re-annotating mutations in gene C20orf96: skipping.
Problem with re-annotating mutations in gene C21orf29: skipping.
Problem with re-annotating mutations in gene C21orf63: skipping.
Problem with re-annotating mutations in gene C21orf70: skipping.
Problem with re-annotating mutations in gene C21orf91: skipping.
Problem with re-annotating mutations in gene C22orf23: skipping.
Problem with re-annotating mutations in gene C22orf24: skipping.
Problem with re-annotating mutations in gene C22orf25: skipping.
Problem with re-annotating mutations in gene C22orf31: skipping.
Problem with re-annotating mutations in gene C22orf40: skipping.
Problem with re-annotating mutations in gene C22orf42: skipping.
Problem with re-annotating mutations in gene C22orf43: skipping.
Problem with re-annotating mutations in gene C2CD2: skipping.
1700/14661 Problem with re-annotating mutations in gene C2CD3: skipping.
Problem with re-annotating mutations in gene C2orf15: skipping.
Problem with re-annotating mutations in gene C2orf16: skipping.
Problem with re-annotating mutations in gene C2orf18: skipping.
Problem with re-annotating mutations in gene C2orf24: skipping.
Problem with re-annotating mutations in gene C2orf3: skipping.
Problem with re-annotating mutations in gene C2orf34: skipping.
Problem with re-annotating mutations in gene C2orf39: skipping.
Problem with re-annotating mutations in gene C2orf42: skipping.
Problem with re-annotating mutations in gene C2orf44: skipping.
Problem with re-annotating mutations in gene C2orf49: skipping.
Problem with re-annotating mutations in gene C2orf53: skipping.
Problem with re-annotating mutations in gene C2orf55: skipping.
Problem with re-annotating mutations in gene C2orf56: skipping.
Problem with re-annotating mutations in gene C2orf62: skipping.
Problem with re-annotating mutations in gene C2orf63: skipping.
Problem with re-annotating mutations in gene C2orf67: skipping.
Problem with re-annotating mutations in gene C2orf69: skipping.
Problem with re-annotating mutations in gene C2orf71: skipping.
Problem with re-annotating mutations in gene C2orf77: skipping.
Problem with re-annotating mutations in gene C2orf78: skipping.
Problem with re-annotating mutations in gene C2orf79: skipping.
Problem with re-annotating mutations in gene C2orf80: skipping.
Problem with re-annotating mutations in gene C2orf86: skipping.
Problem with re-annotating mutations in gene C3: skipping.
Problem with re-annotating mutations in gene C3AR1: skipping.
Problem with re-annotating mutations in gene C3orf15: skipping.
Problem with re-annotating mutations in gene C3orf19: skipping.
Problem with re-annotating mutations in gene C3orf20: skipping.
Problem with re-annotating mutations in gene C3orf23: skipping.
Problem with re-annotating mutations in gene C3orf24: skipping.
Problem with re-annotating mutations in gene C3orf26: skipping.
Problem with re-annotating mutations in gene C3orf27: skipping.
Problem with re-annotating mutations in gene C3orf30: skipping.
Problem with re-annotating mutations in gene C3orf32: skipping.
Problem with re-annotating mutations in gene C3orf33: skipping.
Problem with re-annotating mutations in gene C3orf34: skipping.
Problem with re-annotating mutations in gene C3orf36: skipping.
Problem with re-annotating mutations in gene C3orf38: skipping.
Problem with re-annotating mutations in gene C3orf39: skipping.
Problem with re-annotating mutations in gene C3orf58: skipping.
Problem with re-annotating mutations in gene C3orf59: skipping.
Problem with re-annotating mutations in gene C3orf63: skipping.
Problem with re-annotating mutations in gene C3orf64: skipping.
Problem with re-annotating mutations in gene C3orf67: skipping.
Problem with re-annotating mutations in gene C3orf70: skipping.
Problem with re-annotating mutations in gene C3orf79: skipping.
Problem with re-annotating mutations in gene C4BPA: skipping.
Problem with re-annotating mutations in gene C4orf14: skipping.
Problem with re-annotating mutations in gene C4orf21: skipping.
Problem with re-annotating mutations in gene C4orf22: skipping.
Problem with re-annotating mutations in gene C4orf26: skipping.
Problem with re-annotating mutations in gene C4orf27: skipping.
Problem with re-annotating mutations in gene C4orf31: skipping.
Problem with re-annotating mutations in gene C4orf35: skipping.
Problem with re-annotating mutations in gene C4orf37: skipping.
Problem with re-annotating mutations in gene C4orf41: skipping.
Problem with re-annotating mutations in gene C4orf43: skipping.
Problem with re-annotating mutations in gene C4orf45: skipping.
Problem with re-annotating mutations in gene C5: skipping.
Problem with re-annotating mutations in gene C5AR1: skipping.
Problem with re-annotating mutations in gene C5orf22: skipping.
Problem with re-annotating mutations in gene C5orf25: skipping.
Problem with re-annotating mutations in gene C5orf28: skipping.
1800/14661 Problem with re-annotating mutations in gene C5orf30: skipping.
Problem with re-annotating mutations in gene C5orf34: skipping.
Problem with re-annotating mutations in gene C5orf35: skipping.
Problem with re-annotating mutations in gene C5orf36: skipping.
Problem with re-annotating mutations in gene C5orf4: skipping.
Problem with re-annotating mutations in gene C5orf41: skipping.
Problem with re-annotating mutations in gene C5orf42: skipping.
Problem with re-annotating mutations in gene C5orf49: skipping.
Problem with re-annotating mutations in gene C5orf51: skipping.
Problem with re-annotating mutations in gene C5orf54: skipping.
Problem with re-annotating mutations in gene C6: skipping.
Problem with re-annotating mutations in gene C6orf10: skipping.
Problem with re-annotating mutations in gene C6orf118: skipping.
Problem with re-annotating mutations in gene C6orf136: skipping.
Problem with re-annotating mutations in gene C6orf138: skipping.
Problem with re-annotating mutations in gene C6orf146: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene C6orf15: skipping.
Problem with re-annotating mutations in gene C6orf150: skipping.
Problem with re-annotating mutations in gene C6orf153: skipping.
Problem with re-annotating mutations in gene C6orf165: skipping.
Problem with re-annotating mutations in gene C6orf167: skipping.
Problem with re-annotating mutations in gene C6orf168: skipping.
Problem with re-annotating mutations in gene C6orf170: skipping.
Problem with re-annotating mutations in gene C6orf174: skipping.
Problem with re-annotating mutations in gene C6orf186: skipping.
Problem with re-annotating mutations in gene C6orf192: skipping.
Problem with re-annotating mutations in gene C6orf203: skipping.
Problem with re-annotating mutations in gene C6orf204: skipping.
Problem with re-annotating mutations in gene C6orf211: skipping.
Problem with re-annotating mutations in gene C6orf221: skipping.
Problem with re-annotating mutations in gene C6orf222: skipping.
WARNING: unknown chromosome(s):
    'chr6_qbl_hap2'

Problem with re-annotating mutations in gene C6orf25: skipping.
Problem with re-annotating mutations in gene C6orf27: skipping.
Problem with re-annotating mutations in gene C6orf58: skipping.
Problem with re-annotating mutations in gene C6orf62: skipping.
Problem with re-annotating mutations in gene C6orf64: skipping.
Problem with re-annotating mutations in gene C6orf70: skipping.
Problem with re-annotating mutations in gene C6orf81: skipping.
Problem with re-annotating mutations in gene C6orf89: skipping.
Problem with re-annotating mutations in gene C6orf97: skipping.
Problem with re-annotating mutations in gene C7: skipping.
Problem with re-annotating mutations in gene C7orf10: skipping.
Problem with re-annotating mutations in gene C7orf11: skipping.
Problem with re-annotating mutations in gene C7orf16: skipping.
Problem with re-annotating mutations in gene C7orf25: skipping.
Problem with re-annotating mutations in gene C7orf27: skipping.
Problem with re-annotating mutations in gene C7orf29: skipping.
Problem with re-annotating mutations in gene C7orf30: skipping.
Problem with re-annotating mutations in gene C7orf33: skipping.
Problem with re-annotating mutations in gene C7orf42: skipping.
Problem with re-annotating mutations in gene C7orf49: skipping.
Problem with re-annotating mutations in gene C7orf51: skipping.
Problem with re-annotating mutations in gene C7orf53: skipping.
Problem with re-annotating mutations in gene C7orf58: skipping.
Problem with re-annotating mutations in gene C7orf63: skipping.
Problem with re-annotating mutations in gene C7orf64: skipping.
Problem with re-annotating mutations in gene C8A: skipping.
Problem with re-annotating mutations in gene C8B: skipping.
Problem with re-annotating mutations in gene C8orf34: skipping.
Problem with re-annotating mutations in gene C8orf41: skipping.
Problem with re-annotating mutations in gene C8orf42: skipping.
1900/14661 Problem with re-annotating mutations in gene C8orf45: skipping.
Problem with re-annotating mutations in gene C8orf47: skipping.
Problem with re-annotating mutations in gene C8orf74: skipping.
Problem with re-annotating mutations in gene C8orf79: skipping.
Problem with re-annotating mutations in gene C8orf80: skipping.
Problem with re-annotating mutations in gene C8orf84: skipping.
Problem with re-annotating mutations in gene C9: skipping.
Problem with re-annotating mutations in gene C9orf100: skipping.
Problem with re-annotating mutations in gene C9orf102: skipping.
Problem with re-annotating mutations in gene C9orf103: skipping.
Problem with re-annotating mutations in gene C9orf11: skipping.
Problem with re-annotating mutations in gene C9orf114: skipping.
Problem with re-annotating mutations in gene C9orf125: skipping.
Problem with re-annotating mutations in gene C9orf128: skipping.
Problem with re-annotating mutations in gene C9orf131: skipping.
Problem with re-annotating mutations in gene C9orf150: skipping.
Problem with re-annotating mutations in gene C9orf156: skipping.
Problem with re-annotating mutations in gene C9orf171: skipping.
Problem with re-annotating mutations in gene C9orf23: skipping.
Problem with re-annotating mutations in gene C9orf3: skipping.
Problem with re-annotating mutations in gene C9orf41: skipping.
Problem with re-annotating mutations in gene C9orf43: skipping.
Problem with re-annotating mutations in gene C9orf50: skipping.
Problem with re-annotating mutations in gene C9orf68: skipping.
Problem with re-annotating mutations in gene C9orf72: skipping.
Problem with re-annotating mutations in gene C9orf79: skipping.
Problem with re-annotating mutations in gene C9orf80: skipping.
Problem with re-annotating mutations in gene C9orf84: skipping.
Problem with re-annotating mutations in gene C9orf93: skipping.
Problem with re-annotating mutations in gene C9orf96: skipping.
Problem with re-annotating mutations in gene C9orf98: skipping.
Problem with re-annotating mutations in gene CA10: skipping.
Problem with re-annotating mutations in gene CA11: skipping.
Problem with re-annotating mutations in gene CA14: skipping.
Problem with re-annotating mutations in gene CA3: skipping.
Problem with re-annotating mutations in gene CA5A: skipping.
Problem with re-annotating mutations in gene CA6: skipping.
Problem with re-annotating mutations in gene CA8: skipping.
Problem with re-annotating mutations in gene CA9: skipping.
Problem with re-annotating mutations in gene CAB39L: skipping.
Problem with re-annotating mutations in gene CABIN1: skipping.
Problem with re-annotating mutations in gene CABP4: skipping.
Problem with re-annotating mutations in gene CABP5: skipping.
Problem with re-annotating mutations in gene CABYR: skipping.
Problem with re-annotating mutations in gene CACHD1: skipping.
Problem with re-annotating mutations in gene CACNA1A: skipping.
Problem with re-annotating mutations in gene CACNA1B: skipping.
Problem with re-annotating mutations in gene CACNA1C: skipping.
Problem with re-annotating mutations in gene CACNA1D: skipping.
Problem with re-annotating mutations in gene CACNA1E: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CACNA1F: skipping.
Problem with re-annotating mutations in gene CACNA1G: skipping.
Problem with re-annotating mutations in gene CACNA1H: skipping.
Problem with re-annotating mutations in gene CACNA1I: skipping.
Problem with re-annotating mutations in gene CACNA1S: skipping.
Problem with re-annotating mutations in gene CACNA2D1: skipping.
Problem with re-annotating mutations in gene CACNA2D3: skipping.
Problem with re-annotating mutations in gene CACNA2D4: skipping.
Problem with re-annotating mutations in gene CACNB2: skipping.
Problem with re-annotating mutations in gene CACNB3: skipping.
Problem with re-annotating mutations in gene CACNB4: skipping.
Problem with re-annotating mutations in gene CACNG1: skipping.
Problem with re-annotating mutations in gene CACNG2: skipping.
Problem with re-annotating mutations in gene CACNG3: skipping.
Problem with re-annotating mutations in gene CACNG4: skipping.
Problem with re-annotating mutations in gene CACNG5: skipping.
2000/14661 Problem with re-annotating mutations in gene CACNG7: skipping.
Problem with re-annotating mutations in gene CACYBP: skipping.
Problem with re-annotating mutations in gene CAD: skipping.
Problem with re-annotating mutations in gene CADM1: skipping.
Problem with re-annotating mutations in gene CADM2: skipping.
Problem with re-annotating mutations in gene CADM3: skipping.
Problem with re-annotating mutations in gene CADPS: skipping.
Problem with re-annotating mutations in gene CADPS2: skipping.
Problem with re-annotating mutations in gene CALB2: skipping.
Problem with re-annotating mutations in gene CALCA: skipping.
Problem with re-annotating mutations in gene CALCOCO1: skipping.
Problem with re-annotating mutations in gene CALCOCO2: skipping.
Problem with re-annotating mutations in gene CALCR: skipping.
Problem with re-annotating mutations in gene CALCRL: skipping.
Problem with re-annotating mutations in gene CALD1: skipping.
Problem with re-annotating mutations in gene CALML5: skipping.
Problem with re-annotating mutations in gene CALN1: skipping.
Problem with re-annotating mutations in gene CALR3: skipping.
Problem with re-annotating mutations in gene CALU: skipping.
Problem with re-annotating mutations in gene CAMK1: skipping.
Problem with re-annotating mutations in gene CAMK1D: skipping.
Problem with re-annotating mutations in gene CAMK1G: skipping.
Problem with re-annotating mutations in gene CAMK2B: skipping.
Problem with re-annotating mutations in gene CAMK2D: skipping.
Problem with re-annotating mutations in gene CAMK2G: skipping.
Problem with re-annotating mutations in gene CAMK4: skipping.
Problem with re-annotating mutations in gene CAMKV: skipping.
Problem with re-annotating mutations in gene CAMSAP1: skipping.
Problem with re-annotating mutations in gene CAMSAP1L1: skipping.
Problem with re-annotating mutations in gene CAMTA1: skipping.
Problem with re-annotating mutations in gene CAMTA2: skipping.
Problem with re-annotating mutations in gene CAND1: skipping.
Problem with re-annotating mutations in gene CAND2: skipping.
Problem with re-annotating mutations in gene CANX: skipping.
Problem with re-annotating mutations in gene CAP2: skipping.
Problem with re-annotating mutations in gene CAPN1: skipping.
Problem with re-annotating mutations in gene CAPN10: skipping.
Problem with re-annotating mutations in gene CAPN11: skipping.
Problem with re-annotating mutations in gene CAPN12: skipping.
Problem with re-annotating mutations in gene CAPN13: skipping.
Problem with re-annotating mutations in gene CAPN2: skipping.
Problem with re-annotating mutations in gene CAPN3: skipping.
Problem with re-annotating mutations in gene CAPN5: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CAPN6: skipping.
Problem with re-annotating mutations in gene CAPN7: skipping.
Problem with re-annotating mutations in gene CAPRIN1: skipping.
Problem with re-annotating mutations in gene CAPRIN2: skipping.
Problem with re-annotating mutations in gene CAPSL: skipping.
Problem with re-annotating mutations in gene CAPZA1: skipping.
Problem with re-annotating mutations in gene CAPZA2: skipping.
Problem with re-annotating mutations in gene CAPZA3: skipping.
Problem with re-annotating mutations in gene CARD11: skipping.
Problem with re-annotating mutations in gene CARD6: skipping.
Problem with re-annotating mutations in gene CARD8: skipping.
Problem with re-annotating mutations in gene CARD9: skipping.
Problem with re-annotating mutations in gene CARKD: skipping.
Problem with re-annotating mutations in gene CARM1: skipping.
Problem with re-annotating mutations in gene CARS: skipping.
Problem with re-annotating mutations in gene CASC1: skipping.
Problem with re-annotating mutations in gene CASC4: skipping.
Problem with re-annotating mutations in gene CASC5: skipping.
Problem with re-annotating mutations in gene CASD1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CASK: skipping.
Problem with re-annotating mutations in gene CASP1: skipping.
Problem with re-annotating mutations in gene CASP10: skipping.
Problem with re-annotating mutations in gene CASP14: skipping.
Problem with re-annotating mutations in gene CASP2: skipping.
Problem with re-annotating mutations in gene CASP3: skipping.
Problem with re-annotating mutations in gene CASP4: skipping.
Problem with re-annotating mutations in gene CASP5: skipping.
Problem with re-annotating mutations in gene CASP6: skipping.
Problem with re-annotating mutations in gene CASP8: skipping.
Problem with re-annotating mutations in gene CASP8AP2: skipping.
Problem with re-annotating mutations in gene CASP9: skipping.
2100/14661 Problem with re-annotating mutations in gene CASQ1: skipping.
Problem with re-annotating mutations in gene CASQ2: skipping.
Problem with re-annotating mutations in gene CASR: skipping.
Problem with re-annotating mutations in gene CASS4: skipping.
Problem with re-annotating mutations in gene CAST: skipping.
Problem with re-annotating mutations in gene CASZ1: skipping.
Problem with re-annotating mutations in gene CAT: skipping.
Problem with re-annotating mutations in gene CATSPER1: skipping.
Problem with re-annotating mutations in gene CATSPER2: skipping.
Problem with re-annotating mutations in gene CATSPER3: skipping.
Problem with re-annotating mutations in gene CATSPER4: skipping.
Problem with re-annotating mutations in gene CATSPERB: skipping.
Problem with re-annotating mutations in gene CATSPERG: skipping.
Problem with re-annotating mutations in gene CAV3: skipping.
Problem with re-annotating mutations in gene CBFA2T2: skipping.
Problem with re-annotating mutations in gene CBFB: skipping.
Problem with re-annotating mutations in gene CBL: skipping.
Problem with re-annotating mutations in gene CBLB: skipping.
Problem with re-annotating mutations in gene CBLL1: skipping.
Problem with re-annotating mutations in gene CBR4: skipping.
Problem with re-annotating mutations in gene CBS: skipping.
Problem with re-annotating mutations in gene CBX2: skipping.
Problem with re-annotating mutations in gene CBX3: skipping.
Problem with re-annotating mutations in gene CBX8: skipping.
Problem with re-annotating mutations in gene CC2D1A: skipping.
Problem with re-annotating mutations in gene CC2D1B: skipping.
Problem with re-annotating mutations in gene CC2D2A: skipping.
Problem with re-annotating mutations in gene CCAR1: skipping.
Problem with re-annotating mutations in gene CCBE1: skipping.
Problem with re-annotating mutations in gene CCBL1: skipping.
Problem with re-annotating mutations in gene CCBL2: skipping.
Problem with re-annotating mutations in gene CCBP2: skipping.
Problem with re-annotating mutations in gene CCDC102B: skipping.
Problem with re-annotating mutations in gene CCDC103: skipping.
Problem with re-annotating mutations in gene CCDC104: skipping.
Problem with re-annotating mutations in gene CCDC105: skipping.
Problem with re-annotating mutations in gene CCDC106: skipping.
Problem with re-annotating mutations in gene CCDC108: skipping.
Problem with re-annotating mutations in gene CCDC109A: skipping.
Problem with re-annotating mutations in gene CCDC11: skipping.
Problem with re-annotating mutations in gene CCDC110: skipping.
Problem with re-annotating mutations in gene CCDC111: skipping.
Problem with re-annotating mutations in gene CCDC112: skipping.
Problem with re-annotating mutations in gene CCDC113: skipping.
Problem with re-annotating mutations in gene CCDC114: skipping.
Problem with re-annotating mutations in gene CCDC115: skipping.
Problem with re-annotating mutations in gene CCDC116: skipping.
Problem with re-annotating mutations in gene CCDC117: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CCDC120: skipping.
Problem with re-annotating mutations in gene CCDC121: skipping.
Problem with re-annotating mutations in gene CCDC123: skipping.
WARNING: unknown chromosome(s):
    'chr5_h2_hap1'

Problem with re-annotating mutations in gene CCDC125: skipping.
Problem with re-annotating mutations in gene CCDC127: skipping.
Problem with re-annotating mutations in gene CCDC129: skipping.
Problem with re-annotating mutations in gene CCDC13: skipping.
Problem with re-annotating mutations in gene CCDC132: skipping.
Problem with re-annotating mutations in gene CCDC136: skipping.
Problem with re-annotating mutations in gene CCDC137: skipping.
Problem with re-annotating mutations in gene CCDC138: skipping.
Problem with re-annotating mutations in gene CCDC14: skipping.
Problem with re-annotating mutations in gene CCDC141: skipping.
Problem with re-annotating mutations in gene CCDC144A: skipping.
Problem with re-annotating mutations in gene CCDC144B: skipping.
Problem with re-annotating mutations in gene CCDC144NL: skipping.
Problem with re-annotating mutations in gene CCDC146: skipping.
Problem with re-annotating mutations in gene CCDC147: skipping.
Problem with re-annotating mutations in gene CCDC148: skipping.
Problem with re-annotating mutations in gene CCDC15: skipping.
Problem with re-annotating mutations in gene CCDC150: skipping.
Problem with re-annotating mutations in gene CCDC158: skipping.
Problem with re-annotating mutations in gene CCDC159: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CCDC160: skipping.
Problem with re-annotating mutations in gene CCDC17: skipping.
Problem with re-annotating mutations in gene CCDC18: skipping.
Problem with re-annotating mutations in gene CCDC19: skipping.
Problem with re-annotating mutations in gene CCDC21: skipping.
2200/14661 convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CCDC22: skipping.
Problem with re-annotating mutations in gene CCDC24: skipping.
Problem with re-annotating mutations in gene CCDC27: skipping.
Problem with re-annotating mutations in gene CCDC28A: skipping.
Problem with re-annotating mutations in gene CCDC28B: skipping.
Problem with re-annotating mutations in gene CCDC30: skipping.
Problem with re-annotating mutations in gene CCDC34: skipping.
Problem with re-annotating mutations in gene CCDC36: skipping.
Problem with re-annotating mutations in gene CCDC37: skipping.
Problem with re-annotating mutations in gene CCDC39: skipping.
Problem with re-annotating mutations in gene CCDC40: skipping.
Problem with re-annotating mutations in gene CCDC41: skipping.
Problem with re-annotating mutations in gene CCDC42: skipping.
Problem with re-annotating mutations in gene CCDC45: skipping.
Problem with re-annotating mutations in gene CCDC46: skipping.
Problem with re-annotating mutations in gene CCDC47: skipping.
Problem with re-annotating mutations in gene CCDC50: skipping.
Problem with re-annotating mutations in gene CCDC52: skipping.
Problem with re-annotating mutations in gene CCDC55: skipping.
Problem with re-annotating mutations in gene CCDC57: skipping.
Problem with re-annotating mutations in gene CCDC59: skipping.
Problem with re-annotating mutations in gene CCDC6: skipping.
Problem with re-annotating mutations in gene CCDC60: skipping.
Problem with re-annotating mutations in gene CCDC63: skipping.
Problem with re-annotating mutations in gene CCDC64: skipping.
Problem with re-annotating mutations in gene CCDC65: skipping.
Problem with re-annotating mutations in gene CCDC66: skipping.
Problem with re-annotating mutations in gene CCDC7: skipping.
Problem with re-annotating mutations in gene CCDC70: skipping.
Problem with re-annotating mutations in gene CCDC71: skipping.
Problem with re-annotating mutations in gene CCDC73: skipping.
Problem with re-annotating mutations in gene CCDC76: skipping.
Problem with re-annotating mutations in gene CCDC77: skipping.
Problem with re-annotating mutations in gene CCDC8: skipping.
Problem with re-annotating mutations in gene CCDC80: skipping.
Problem with re-annotating mutations in gene CCDC81: skipping.
Problem with re-annotating mutations in gene CCDC82: skipping.
Problem with re-annotating mutations in gene CCDC83: skipping.
Problem with re-annotating mutations in gene CCDC86: skipping.
Problem with re-annotating mutations in gene CCDC88A: skipping.
Problem with re-annotating mutations in gene CCDC88C: skipping.
Problem with re-annotating mutations in gene CCDC9: skipping.
Problem with re-annotating mutations in gene CCDC90B: skipping.
Problem with re-annotating mutations in gene CCDC91: skipping.
Problem with re-annotating mutations in gene CCDC92: skipping.
Problem with re-annotating mutations in gene CCDC93: skipping.
Problem with re-annotating mutations in gene CCDC97: skipping.
Problem with re-annotating mutations in gene CCDC99: skipping.
Problem with re-annotating mutations in gene CCHCR1: skipping.
Problem with re-annotating mutations in gene CCIN: skipping.
Problem with re-annotating mutations in gene CCKAR: skipping.
Problem with re-annotating mutations in gene CCKBR: skipping.
Problem with re-annotating mutations in gene CCL18: skipping.
Problem with re-annotating mutations in gene CCL23: skipping.
Problem with re-annotating mutations in gene CCL27: skipping.
Problem with re-annotating mutations in gene CCM2: skipping.
Problem with re-annotating mutations in gene CCNA1: skipping.
Problem with re-annotating mutations in gene CCNA2: skipping.
Problem with re-annotating mutations in gene CCNB1: skipping.
Problem with re-annotating mutations in gene CCNB2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CCNB3: skipping.
Problem with re-annotating mutations in gene CCNC: skipping.
Problem with re-annotating mutations in gene CCNDBP1: skipping.
Problem with re-annotating mutations in gene CCNE1: skipping.
Problem with re-annotating mutations in gene CCNE2: skipping.
Problem with re-annotating mutations in gene CCNF: skipping.
Problem with re-annotating mutations in gene CCNG1: skipping.
Problem with re-annotating mutations in gene CCNH: skipping.
Problem with re-annotating mutations in gene CCNI: skipping.
2300/14661 Problem with re-annotating mutations in gene CCNL1: skipping.
Problem with re-annotating mutations in gene CCNL2: skipping.
Problem with re-annotating mutations in gene CCNT1: skipping.
Problem with re-annotating mutations in gene CCNT2: skipping.
Problem with re-annotating mutations in gene CCNY: skipping.
Problem with re-annotating mutations in gene CCPG1: skipping.
Problem with re-annotating mutations in gene CCR1: skipping.
Problem with re-annotating mutations in gene CCR3: skipping.
WARNING: unknown chromosome(s):
    'chr3_random'

Problem with re-annotating mutations in gene CCR5: skipping.
Problem with re-annotating mutations in gene CCR6: skipping.
Problem with re-annotating mutations in gene CCR7: skipping.
Problem with re-annotating mutations in gene CCR8: skipping.
Problem with re-annotating mutations in gene CCR9: skipping.
Problem with re-annotating mutations in gene CCRL1: skipping.
Problem with re-annotating mutations in gene CCT4: skipping.
Problem with re-annotating mutations in gene CCT5: skipping.
Problem with re-annotating mutations in gene CCT6A: skipping.
Problem with re-annotating mutations in gene CCT6B: skipping.
Problem with re-annotating mutations in gene CCT8L2: skipping.
Problem with re-annotating mutations in gene CD101: skipping.
Problem with re-annotating mutations in gene CD109: skipping.
Problem with re-annotating mutations in gene CD160: skipping.
Problem with re-annotating mutations in gene CD163: skipping.
Problem with re-annotating mutations in gene CD163L1: skipping.
Problem with re-annotating mutations in gene CD177: skipping.
Problem with re-annotating mutations in gene CD180: skipping.
Problem with re-annotating mutations in gene CD19: skipping.
Problem with re-annotating mutations in gene CD1A: skipping.
Problem with re-annotating mutations in gene CD1D: skipping.
Problem with re-annotating mutations in gene CD1E: skipping.
Problem with re-annotating mutations in gene CD2: skipping.
Problem with re-annotating mutations in gene CD200: skipping.
Problem with re-annotating mutations in gene CD200R1: skipping.
Problem with re-annotating mutations in gene CD200R1L: skipping.
Problem with re-annotating mutations in gene CD207: skipping.
Problem with re-annotating mutations in gene CD209: skipping.
Problem with re-annotating mutations in gene CD22: skipping.
Problem with re-annotating mutations in gene CD226: skipping.
Problem with re-annotating mutations in gene CD244: skipping.
Problem with re-annotating mutations in gene CD247: skipping.
Problem with re-annotating mutations in gene CD27: skipping.
Problem with re-annotating mutations in gene CD274: skipping.
Problem with re-annotating mutations in gene CD28: skipping.
Problem with re-annotating mutations in gene CD2AP: skipping.
Problem with re-annotating mutations in gene CD2BP2: skipping.
Problem with re-annotating mutations in gene CD300A: skipping.
Problem with re-annotating mutations in gene CD300C: skipping.
Problem with re-annotating mutations in gene CD300E: skipping.
Problem with re-annotating mutations in gene CD33: skipping.
Problem with re-annotating mutations in gene CD37: skipping.
Problem with re-annotating mutations in gene CD38: skipping.
Problem with re-annotating mutations in gene CD3G: skipping.
Problem with re-annotating mutations in gene CD4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CD40LG: skipping.
Problem with re-annotating mutations in gene CD44: skipping.
Problem with re-annotating mutations in gene CD46: skipping.
Problem with re-annotating mutations in gene CD47: skipping.
Problem with re-annotating mutations in gene CD5: skipping.
Problem with re-annotating mutations in gene CD53: skipping.
Problem with re-annotating mutations in gene CD55: skipping.
Problem with re-annotating mutations in gene CD58: skipping.
Problem with re-annotating mutations in gene CD5L: skipping.
Problem with re-annotating mutations in gene CD6: skipping.
Problem with re-annotating mutations in gene CD63: skipping.
Problem with re-annotating mutations in gene CD70: skipping.
Problem with re-annotating mutations in gene CD72: skipping.
Problem with re-annotating mutations in gene CD79A: skipping.
Problem with re-annotating mutations in gene CD84: skipping.
Problem with re-annotating mutations in gene CD8B: skipping.
2400/14661 Problem with re-annotating mutations in gene CD93: skipping.
Problem with re-annotating mutations in gene CD96: skipping.
Problem with re-annotating mutations in gene CD97: skipping.
Problem with re-annotating mutations in gene CDADC1: skipping.
Problem with re-annotating mutations in gene CDAN1: skipping.
Problem with re-annotating mutations in gene CDC14A: skipping.
Problem with re-annotating mutations in gene CDC14B: skipping.
Problem with re-annotating mutations in gene CDC16: skipping.
Problem with re-annotating mutations in gene CDC20: skipping.
Problem with re-annotating mutations in gene CDC20B: skipping.
Problem with re-annotating mutations in gene CDC23: skipping.
Problem with re-annotating mutations in gene CDC25A: skipping.
Problem with re-annotating mutations in gene CDC25B: skipping.
Problem with re-annotating mutations in gene CDC25C: skipping.
Problem with re-annotating mutations in gene CDC27: skipping.
Problem with re-annotating mutations in gene CDC40: skipping.
Problem with re-annotating mutations in gene CDC42BPA: skipping.
Problem with re-annotating mutations in gene CDC42BPB: skipping.
Problem with re-annotating mutations in gene CDC42BPG: skipping.
Problem with re-annotating mutations in gene CDC42EP1: skipping.
Problem with re-annotating mutations in gene CDC42EP3: skipping.
Problem with re-annotating mutations in gene CDC5L: skipping.
Problem with re-annotating mutations in gene CDC7: skipping.
Problem with re-annotating mutations in gene CDC73: skipping.
Problem with re-annotating mutations in gene CDCA2: skipping.
Problem with re-annotating mutations in gene CDCA3: skipping.
Problem with re-annotating mutations in gene CDCA4: skipping.
Problem with re-annotating mutations in gene CDCA7: skipping.
Problem with re-annotating mutations in gene CDCA7L: skipping.
Problem with re-annotating mutations in gene CDCA8: skipping.
Problem with re-annotating mutations in gene CDCP1: skipping.
Problem with re-annotating mutations in gene CDCP2: skipping.
Problem with re-annotating mutations in gene CDH1: skipping.
Problem with re-annotating mutations in gene CDH10: skipping.
Problem with re-annotating mutations in gene CDH11: skipping.
Problem with re-annotating mutations in gene CDH12: skipping.
Problem with re-annotating mutations in gene CDH13: skipping.
Problem with re-annotating mutations in gene CDH16: skipping.
Problem with re-annotating mutations in gene CDH17: skipping.
Problem with re-annotating mutations in gene CDH18: skipping.
Problem with re-annotating mutations in gene CDH19: skipping.
Problem with re-annotating mutations in gene CDH2: skipping.
Problem with re-annotating mutations in gene CDH20: skipping.
Problem with re-annotating mutations in gene CDH22: skipping.
Problem with re-annotating mutations in gene CDH23: skipping.
Problem with re-annotating mutations in gene CDH24: skipping.
Problem with re-annotating mutations in gene CDH26: skipping.
Problem with re-annotating mutations in gene CDH3: skipping.
Problem with re-annotating mutations in gene CDH4: skipping.
Problem with re-annotating mutations in gene CDH5: skipping.
Problem with re-annotating mutations in gene CDH6: skipping.
Problem with re-annotating mutations in gene CDH7: skipping.
Problem with re-annotating mutations in gene CDH8: skipping.
Problem with re-annotating mutations in gene CDH9: skipping.
Problem with re-annotating mutations in gene CDK2: skipping.
Problem with re-annotating mutations in gene CDK3: skipping.
Problem with re-annotating mutations in gene CDK4: skipping.
Problem with re-annotating mutations in gene CDK5RAP1: skipping.
Problem with re-annotating mutations in gene CDK5RAP2: skipping.
Problem with re-annotating mutations in gene CDK5RAP3: skipping.
Problem with re-annotating mutations in gene CDKAL1: skipping.
Problem with re-annotating mutations in gene CDKL1: skipping.
Problem with re-annotating mutations in gene CDKL2: skipping.
Problem with re-annotating mutations in gene CDKL3: skipping.
Problem with re-annotating mutations in gene CDKL4: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CDKL5: skipping.
Problem with re-annotating mutations in gene CDKN1B: skipping.
2500/14661 Problem with re-annotating mutations in gene CDKN2AIP: skipping.
Problem with re-annotating mutations in gene CDNF: skipping.
Problem with re-annotating mutations in gene CDON: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CDR1: skipping.
Problem with re-annotating mutations in gene CDR2: skipping.
Problem with re-annotating mutations in gene CDRT1: skipping.
Problem with re-annotating mutations in gene CDS1: skipping.
Problem with re-annotating mutations in gene CDS2: skipping.
Problem with re-annotating mutations in gene CDYL: skipping.
Problem with re-annotating mutations in gene CDYL2: skipping.
Problem with re-annotating mutations in gene CEACAM16: skipping.
Problem with re-annotating mutations in gene CEACAM18: skipping.
Problem with re-annotating mutations in gene CEACAM19: skipping.
Problem with re-annotating mutations in gene CEACAM20: skipping.
Problem with re-annotating mutations in gene CEACAM21: skipping.
Problem with re-annotating mutations in gene CEACAM4: skipping.
Problem with re-annotating mutations in gene CEACAM5: skipping.
Problem with re-annotating mutations in gene CEACAM7: skipping.
Problem with re-annotating mutations in gene CEACAM8: skipping.
Problem with re-annotating mutations in gene CEBPZ: skipping.
Problem with re-annotating mutations in gene CECR1: skipping.
Problem with re-annotating mutations in gene CECR2: skipping.
Problem with re-annotating mutations in gene CECR5: skipping.
Problem with re-annotating mutations in gene CELA1: skipping.
Problem with re-annotating mutations in gene CELA3A: skipping.
Problem with re-annotating mutations in gene CELSR1: skipping.
Problem with re-annotating mutations in gene CELSR2: skipping.
Problem with re-annotating mutations in gene CELSR3: skipping.
Problem with re-annotating mutations in gene CENPA: skipping.
Problem with re-annotating mutations in gene CENPB: skipping.
Problem with re-annotating mutations in gene CENPC1: skipping.
Problem with re-annotating mutations in gene CENPE: skipping.
Problem with re-annotating mutations in gene CENPF: skipping.
Problem with re-annotating mutations in gene CENPJ: skipping.
Problem with re-annotating mutations in gene CENPK: skipping.
Problem with re-annotating mutations in gene CENPL: skipping.
Problem with re-annotating mutations in gene CENPN: skipping.
Problem with re-annotating mutations in gene CENPO: skipping.
Problem with re-annotating mutations in gene CENPV: skipping.
Problem with re-annotating mutations in gene CEP110: skipping.
Problem with re-annotating mutations in gene CEP120: skipping.
Problem with re-annotating mutations in gene CEP135: skipping.
Problem with re-annotating mutations in gene CEP152: skipping.
Problem with re-annotating mutations in gene CEP164: skipping.
Problem with re-annotating mutations in gene CEP170: skipping.
Problem with re-annotating mutations in gene CEP192: skipping.
Problem with re-annotating mutations in gene CEP250: skipping.
Problem with re-annotating mutations in gene CEP290: skipping.
Problem with re-annotating mutations in gene CEP350: skipping.
Problem with re-annotating mutations in gene CEP55: skipping.
Problem with re-annotating mutations in gene CEP57: skipping.
Problem with re-annotating mutations in gene CEP63: skipping.
Problem with re-annotating mutations in gene CEP68: skipping.
Problem with re-annotating mutations in gene CEP70: skipping.
Problem with re-annotating mutations in gene CEP76: skipping.
Problem with re-annotating mutations in gene CEP78: skipping.
Problem with re-annotating mutations in gene CEP97: skipping.
Problem with re-annotating mutations in gene CER1: skipping.
Problem with re-annotating mutations in gene CERKL: skipping.
Problem with re-annotating mutations in gene CES1: skipping.
Problem with re-annotating mutations in gene CES3: skipping.
Problem with re-annotating mutations in gene CETN1: skipping.
Problem with re-annotating mutations in gene CETP: skipping.
Problem with re-annotating mutations in gene CFB: skipping.
Problem with re-annotating mutations in gene CFDP1: skipping.
Problem with re-annotating mutations in gene CFH: skipping.
Problem with re-annotating mutations in gene CFHR2: skipping.
Problem with re-annotating mutations in gene CFHR5: skipping.
Problem with re-annotating mutations in gene CFI: skipping.
Problem with re-annotating mutations in gene CFLAR: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CFP: skipping.
Problem with re-annotating mutations in gene CFTR: skipping.
Problem with re-annotating mutations in gene CGA: skipping.
2600/14661 Problem with re-annotating mutations in gene CGGBP1: skipping.
Problem with re-annotating mutations in gene CGN: skipping.
Problem with re-annotating mutations in gene CGNL1: skipping.
Problem with re-annotating mutations in gene CH25H: skipping.
Problem with re-annotating mutations in gene CHAC2: skipping.
Problem with re-annotating mutations in gene CHAD: skipping.
Problem with re-annotating mutations in gene CHAF1A: skipping.
Problem with re-annotating mutations in gene CHAF1B: skipping.
Problem with re-annotating mutations in gene CHAT: skipping.
Problem with re-annotating mutations in gene CHCHD5: skipping.
Problem with re-annotating mutations in gene CHCHD6: skipping.
Problem with re-annotating mutations in gene CHD1: skipping.
Problem with re-annotating mutations in gene CHD1L: skipping.
Problem with re-annotating mutations in gene CHD2: skipping.
Problem with re-annotating mutations in gene CHD3: skipping.
Problem with re-annotating mutations in gene CHD4: skipping.
Problem with re-annotating mutations in gene CHD5: skipping.
Problem with re-annotating mutations in gene CHD6: skipping.
Problem with re-annotating mutations in gene CHD7: skipping.
Problem with re-annotating mutations in gene CHD8: skipping.
Problem with re-annotating mutations in gene CHD9: skipping.
Problem with re-annotating mutations in gene CHDH: skipping.
Problem with re-annotating mutations in gene CHERP: skipping.
Problem with re-annotating mutations in gene CHFR: skipping.
Problem with re-annotating mutations in gene CHGB: skipping.
Problem with re-annotating mutations in gene CHI3L1: skipping.
Problem with re-annotating mutations in gene CHI3L2: skipping.
Problem with re-annotating mutations in gene CHIA: skipping.
Problem with re-annotating mutations in gene CHIT1: skipping.
Problem with re-annotating mutations in gene CHKA: skipping.
Problem with re-annotating mutations in gene CHL1: skipping.
Problem with re-annotating mutations in gene CHML: skipping.
Problem with re-annotating mutations in gene CHMP2A: skipping.
Problem with re-annotating mutations in gene CHMP2B: skipping.
Problem with re-annotating mutations in gene CHMP5: skipping.
Problem with re-annotating mutations in gene CHN1: skipping.
Problem with re-annotating mutations in gene CHN2: skipping.
Problem with re-annotating mutations in gene CHODL: skipping.
Problem with re-annotating mutations in gene CHORDC1: skipping.
Problem with re-annotating mutations in gene CHPF: skipping.
Problem with re-annotating mutations in gene CHPF2: skipping.
Problem with re-annotating mutations in gene CHRD: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CHRDL1: skipping.
Problem with re-annotating mutations in gene CHRDL2: skipping.
Problem with re-annotating mutations in gene CHRM1: skipping.
Problem with re-annotating mutations in gene CHRM2: skipping.
Problem with re-annotating mutations in gene CHRM3: skipping.
Problem with re-annotating mutations in gene CHRM5: skipping.
Problem with re-annotating mutations in gene CHRNA1: skipping.
Problem with re-annotating mutations in gene CHRNA2: skipping.
Problem with re-annotating mutations in gene CHRNA5: skipping.
Problem with re-annotating mutations in gene CHRNA6: skipping.
Problem with re-annotating mutations in gene CHRNA9: skipping.
Problem with re-annotating mutations in gene CHRNB1: skipping.
Problem with re-annotating mutations in gene CHRNB2: skipping.
Problem with re-annotating mutations in gene CHRNB3: skipping.
Problem with re-annotating mutations in gene CHRND: skipping.
Problem with re-annotating mutations in gene CHRNE: skipping.
Problem with re-annotating mutations in gene CHRNG: skipping.
Problem with re-annotating mutations in gene CHST1: skipping.
Problem with re-annotating mutations in gene CHST10: skipping.
Problem with re-annotating mutations in gene CHST11: skipping.
Problem with re-annotating mutations in gene CHST12: skipping.
Problem with re-annotating mutations in gene CHST13: skipping.
Problem with re-annotating mutations in gene CHST15: skipping.
Problem with re-annotating mutations in gene CHST4: skipping.
Problem with re-annotating mutations in gene CHST5: skipping.
Problem with re-annotating mutations in gene CHST8: skipping.
Problem with re-annotating mutations in gene CHST9: skipping.
Problem with re-annotating mutations in gene CHSY1: skipping.
Problem with re-annotating mutations in gene CHSY3: skipping.
Problem with re-annotating mutations in gene CHUK: skipping.
Problem with re-annotating mutations in gene CIB2: skipping.
2700/14661 Problem with re-annotating mutations in gene CIB3: skipping.
Problem with re-annotating mutations in gene CIC: skipping.
Problem with re-annotating mutations in gene CIITA: skipping.
Problem with re-annotating mutations in gene CILP: skipping.
Problem with re-annotating mutations in gene CILP2: skipping.
Problem with re-annotating mutations in gene CIR1: skipping.
Problem with re-annotating mutations in gene CIRH1A: skipping.
Problem with re-annotating mutations in gene CIT: skipping.
Problem with re-annotating mutations in gene CIZ1: skipping.
Problem with re-annotating mutations in gene CKAP2L: skipping.
Problem with re-annotating mutations in gene CKAP4: skipping.
Problem with re-annotating mutations in gene CKAP5: skipping.
Problem with re-annotating mutations in gene CKM: skipping.
Problem with re-annotating mutations in gene CKMT2: skipping.
Problem with re-annotating mutations in gene CLASP1: skipping.
Problem with re-annotating mutations in gene CLASP2: skipping.
Problem with re-annotating mutations in gene CLC: skipping.
Problem with re-annotating mutations in gene CLCA1: skipping.
Problem with re-annotating mutations in gene CLCA2: skipping.
Problem with re-annotating mutations in gene CLCA4: skipping.
Problem with re-annotating mutations in gene CLCC1: skipping.
Problem with re-annotating mutations in gene CLCN1: skipping.
Problem with re-annotating mutations in gene CLCN2: skipping.
Problem with re-annotating mutations in gene CLCN3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CLCN4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CLCN5: skipping.
Problem with re-annotating mutations in gene CLCN6: skipping.
Problem with re-annotating mutations in gene CLDN10: skipping.
Problem with re-annotating mutations in gene CLDN12: skipping.
Problem with re-annotating mutations in gene CLDN16: skipping.
Problem with re-annotating mutations in gene CLDN17: skipping.
Problem with re-annotating mutations in gene CLDN18: skipping.
Problem with re-annotating mutations in gene CLDN6: skipping.
Problem with re-annotating mutations in gene CLDN7: skipping.
Problem with re-annotating mutations in gene CLDN8: skipping.
Problem with re-annotating mutations in gene CLDND1: skipping.
Problem with re-annotating mutations in gene CLDND2: skipping.
Problem with re-annotating mutations in gene CLEC10A: skipping.
Problem with re-annotating mutations in gene CLEC12A: skipping.
Problem with re-annotating mutations in gene CLEC14A: skipping.
Problem with re-annotating mutations in gene CLEC16A: skipping.
Problem with re-annotating mutations in gene CLEC18B: skipping.
Problem with re-annotating mutations in gene CLEC18C: skipping.
Problem with re-annotating mutations in gene CLEC1A: skipping.
Problem with re-annotating mutations in gene CLEC1B: skipping.
Problem with re-annotating mutations in gene CLEC2B: skipping.
Problem with re-annotating mutations in gene CLEC4A: skipping.
Problem with re-annotating mutations in gene CLEC4C: skipping.
Problem with re-annotating mutations in gene CLEC4D: skipping.
Problem with re-annotating mutations in gene CLEC4E: skipping.
Problem with re-annotating mutations in gene CLEC4F: skipping.
Problem with re-annotating mutations in gene CLEC4M: skipping.
Problem with re-annotating mutations in gene CLEC5A: skipping.
Problem with re-annotating mutations in gene CLEC7A: skipping.
Problem with re-annotating mutations in gene CLEC9A: skipping.
Problem with re-annotating mutations in gene CLECL1: skipping.
Problem with re-annotating mutations in gene CLGN: skipping.
Problem with re-annotating mutations in gene CLIC5: skipping.
Problem with re-annotating mutations in gene CLIC6: skipping.
Problem with re-annotating mutations in gene CLINT1: skipping.
Problem with re-annotating mutations in gene CLIP1: skipping.
Problem with re-annotating mutations in gene CLIP2: skipping.
Problem with re-annotating mutations in gene CLIP3: skipping.
Problem with re-annotating mutations in gene CLIP4: skipping.
Problem with re-annotating mutations in gene CLK1: skipping.
Problem with re-annotating mutations in gene CLK3: skipping.
Problem with re-annotating mutations in gene CLK4: skipping.
Problem with re-annotating mutations in gene CLMN: skipping.
Problem with re-annotating mutations in gene CLN5: skipping.
Problem with re-annotating mutations in gene CLN8: skipping.
Problem with re-annotating mutations in gene CLNK: skipping.
Problem with re-annotating mutations in gene CLOCK: skipping.
Problem with re-annotating mutations in gene CLP1: skipping.
Problem with re-annotating mutations in gene CLPB: skipping.
2800/14661 Problem with re-annotating mutations in gene CLPP: skipping.
Problem with re-annotating mutations in gene CLPS: skipping.
Problem with re-annotating mutations in gene CLPTM1: skipping.
Problem with re-annotating mutations in gene CLRN2: skipping.
Problem with re-annotating mutations in gene CLSPN: skipping.
Problem with re-annotating mutations in gene CLSTN1: skipping.
Problem with re-annotating mutations in gene CLSTN2: skipping.
Problem with re-annotating mutations in gene CLSTN3: skipping.
Problem with re-annotating mutations in gene CLTA: skipping.
Problem with re-annotating mutations in gene CLTC: skipping.
Problem with re-annotating mutations in gene CLTCL1: skipping.
Problem with re-annotating mutations in gene CLU: skipping.
Problem with re-annotating mutations in gene CLUAP1: skipping.
Problem with re-annotating mutations in gene CLUL1: skipping.
Problem with re-annotating mutations in gene CLVS1: skipping.
Problem with re-annotating mutations in gene CLVS2: skipping.
Problem with re-annotating mutations in gene CLYBL: skipping.
Problem with re-annotating mutations in gene CMAS: skipping.
Problem with re-annotating mutations in gene CMIP: skipping.
Problem with re-annotating mutations in gene CMKLR1: skipping.
Problem with re-annotating mutations in gene CMPK1: skipping.
Problem with re-annotating mutations in gene CMTM1: skipping.
Problem with re-annotating mutations in gene CMTM2: skipping.
Problem with re-annotating mutations in gene CMYA5: skipping.
Problem with re-annotating mutations in gene CNBD1: skipping.
Problem with re-annotating mutations in gene CNDP1: skipping.
Problem with re-annotating mutations in gene CNDP2: skipping.
Problem with re-annotating mutations in gene CNGA1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CNGA2: skipping.
Problem with re-annotating mutations in gene CNGA3: skipping.
Problem with re-annotating mutations in gene CNGA4: skipping.
Problem with re-annotating mutations in gene CNGB1: skipping.
Problem with re-annotating mutations in gene CNGB3: skipping.
Problem with re-annotating mutations in gene CNIH: skipping.
Problem with re-annotating mutations in gene CNIH3: skipping.
Problem with re-annotating mutations in gene CNKSR1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CNKSR2: skipping.
Problem with re-annotating mutations in gene CNKSR3: skipping.
Problem with re-annotating mutations in gene CNNM1: skipping.
Problem with re-annotating mutations in gene CNNM2: skipping.
Problem with re-annotating mutations in gene CNNM3: skipping.
Problem with re-annotating mutations in gene CNOT1: skipping.
Problem with re-annotating mutations in gene CNOT10: skipping.
Problem with re-annotating mutations in gene CNOT3: skipping.
Problem with re-annotating mutations in gene CNOT4: skipping.
Problem with re-annotating mutations in gene CNOT6: skipping.
Problem with re-annotating mutations in gene CNOT6L: skipping.
Problem with re-annotating mutations in gene CNOT7: skipping.
Problem with re-annotating mutations in gene CNOT8: skipping.
Problem with re-annotating mutations in gene CNPY1: skipping.
Problem with re-annotating mutations in gene CNPY2: skipping.
Problem with re-annotating mutations in gene CNR1: skipping.
Problem with re-annotating mutations in gene CNRIP1: skipping.
Problem with re-annotating mutations in gene CNTD1: skipping.
Problem with re-annotating mutations in gene CNTF: skipping.
Problem with re-annotating mutations in gene CNTFR: skipping.
Problem with re-annotating mutations in gene CNTLN: skipping.
Problem with re-annotating mutations in gene CNTN1: skipping.
Problem with re-annotating mutations in gene CNTN2: skipping.
Problem with re-annotating mutations in gene CNTN3: skipping.
Problem with re-annotating mutations in gene CNTN4: skipping.
Problem with re-annotating mutations in gene CNTN5: skipping.
Problem with re-annotating mutations in gene CNTN6: skipping.
Problem with re-annotating mutations in gene CNTNAP1: skipping.
Problem with re-annotating mutations in gene CNTNAP2: skipping.
Problem with re-annotating mutations in gene CNTNAP3: skipping.
Problem with re-annotating mutations in gene CNTNAP4: skipping.
Problem with re-annotating mutations in gene CNTNAP5: skipping.
Problem with re-annotating mutations in gene CNTROB: skipping.
Problem with re-annotating mutations in gene COBL: skipping.
Problem with re-annotating mutations in gene COBLL1: skipping.
Problem with re-annotating mutations in gene COBRA1: skipping.
Problem with re-annotating mutations in gene COCH: skipping.
Problem with re-annotating mutations in gene COG1: skipping.
Problem with re-annotating mutations in gene COG2: skipping.
Problem with re-annotating mutations in gene COG3: skipping.
Problem with re-annotating mutations in gene COG4: skipping.
Problem with re-annotating mutations in gene COG5: skipping.
Problem with re-annotating mutations in gene COG6: skipping.
Problem with re-annotating mutations in gene COG7: skipping.
Problem with re-annotating mutations in gene COL11A1: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene COL11A2: skipping.
Problem with re-annotating mutations in gene COL12A1: skipping.
Problem with re-annotating mutations in gene COL13A1: skipping.
2900/14661 Problem with re-annotating mutations in gene COL14A1: skipping.
Problem with re-annotating mutations in gene COL15A1: skipping.
Problem with re-annotating mutations in gene COL16A1: skipping.
Problem with re-annotating mutations in gene COL17A1: skipping.
Problem with re-annotating mutations in gene COL18A1: skipping.
Problem with re-annotating mutations in gene COL19A1: skipping.
Problem with re-annotating mutations in gene COL1A1: skipping.
Problem with re-annotating mutations in gene COL1A2: skipping.
Problem with re-annotating mutations in gene COL21A1: skipping.
Problem with re-annotating mutations in gene COL22A1: skipping.
Problem with re-annotating mutations in gene COL23A1: skipping.
Problem with re-annotating mutations in gene COL24A1: skipping.
Problem with re-annotating mutations in gene COL25A1: skipping.
Problem with re-annotating mutations in gene COL27A1: skipping.
Problem with re-annotating mutations in gene COL28A1: skipping.
Problem with re-annotating mutations in gene COL2A1: skipping.
Problem with re-annotating mutations in gene COL3A1: skipping.
Problem with re-annotating mutations in gene COL4A1: skipping.
Problem with re-annotating mutations in gene COL4A2: skipping.
Problem with re-annotating mutations in gene COL4A3: skipping.
Problem with re-annotating mutations in gene COL4A3BP: skipping.
Problem with re-annotating mutations in gene COL4A4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene COL4A5: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene COL4A6: skipping.
Problem with re-annotating mutations in gene COL5A1: skipping.
Problem with re-annotating mutations in gene COL5A2: skipping.
Problem with re-annotating mutations in gene COL5A3: skipping.
Problem with re-annotating mutations in gene COL6A3: skipping.
Problem with re-annotating mutations in gene COL6A6: skipping.
Problem with re-annotating mutations in gene COL7A1: skipping.
Problem with re-annotating mutations in gene COL9A1: skipping.
Problem with re-annotating mutations in gene COL9A2: skipping.
Problem with re-annotating mutations in gene COLEC10: skipping.
Problem with re-annotating mutations in gene COLEC11: skipping.
Problem with re-annotating mutations in gene COLEC12: skipping.
Problem with re-annotating mutations in gene COMMD10: skipping.
Problem with re-annotating mutations in gene COMMD2: skipping.
Problem with re-annotating mutations in gene COMMD5: skipping.
Problem with re-annotating mutations in gene COMMD8: skipping.
Problem with re-annotating mutations in gene COMP: skipping.
Problem with re-annotating mutations in gene COPA: skipping.
Problem with re-annotating mutations in gene COPB1: skipping.
Problem with re-annotating mutations in gene COPB2: skipping.
Problem with re-annotating mutations in gene COPE: skipping.
Problem with re-annotating mutations in gene COPG: skipping.
Problem with re-annotating mutations in gene COPS3: skipping.
Problem with re-annotating mutations in gene COPS4: skipping.
Problem with re-annotating mutations in gene COPS6: skipping.
Problem with re-annotating mutations in gene COQ10B: skipping.
Problem with re-annotating mutations in gene COQ2: skipping.
Problem with re-annotating mutations in gene COQ6: skipping.
Problem with re-annotating mutations in gene COQ9: skipping.
Problem with re-annotating mutations in gene CORIN: skipping.
Problem with re-annotating mutations in gene CORO2A: skipping.
Problem with re-annotating mutations in gene CORO2B: skipping.
Problem with re-annotating mutations in gene CORO6: skipping.
Problem with re-annotating mutations in gene COX10: skipping.
Problem with re-annotating mutations in gene COX15: skipping.
Problem with re-annotating mutations in gene COX18: skipping.
Problem with re-annotating mutations in gene COX4I1: skipping.
Problem with re-annotating mutations in gene COX4I2: skipping.
Problem with re-annotating mutations in gene CP: skipping.
Problem with re-annotating mutations in gene CP110: skipping.
Problem with re-annotating mutations in gene CPA1: skipping.
Problem with re-annotating mutations in gene CPA3: skipping.
Problem with re-annotating mutations in gene CPA4: skipping.
Problem with re-annotating mutations in gene CPA5: skipping.
Problem with re-annotating mutations in gene CPA6: skipping.
Problem with re-annotating mutations in gene CPAMD8: skipping.
Problem with re-annotating mutations in gene CPB1: skipping.
Problem with re-annotating mutations in gene CPB2: skipping.
Problem with re-annotating mutations in gene CPD: skipping.
Problem with re-annotating mutations in gene CPE: skipping.
Problem with re-annotating mutations in gene CPEB1: skipping.
Problem with re-annotating mutations in gene CPEB2: skipping.
Problem with re-annotating mutations in gene CPEB3: skipping.
3000/14661 Problem with re-annotating mutations in gene CPEB4: skipping.
Problem with re-annotating mutations in gene CPLX4: skipping.
Problem with re-annotating mutations in gene CPN1: skipping.
Problem with re-annotating mutations in gene CPNE1: skipping.
Problem with re-annotating mutations in gene CPNE2: skipping.
Problem with re-annotating mutations in gene CPNE3: skipping.
Problem with re-annotating mutations in gene CPNE4: skipping.
Problem with re-annotating mutations in gene CPNE6: skipping.
Problem with re-annotating mutations in gene CPNE8: skipping.
Problem with re-annotating mutations in gene CPNE9: skipping.
Problem with re-annotating mutations in gene CPO: skipping.
Problem with re-annotating mutations in gene CPS1: skipping.
Problem with re-annotating mutations in gene CPSF1: skipping.
Problem with re-annotating mutations in gene CPSF3: skipping.
Problem with re-annotating mutations in gene CPSF4: skipping.
Problem with re-annotating mutations in gene CPSF6: skipping.
Problem with re-annotating mutations in gene CPSF7: skipping.
Problem with re-annotating mutations in gene CPT1A: skipping.
Problem with re-annotating mutations in gene CPT1B: skipping.
Problem with re-annotating mutations in gene CPT2: skipping.
Problem with re-annotating mutations in gene CPVL: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CPXCR1: skipping.
Problem with re-annotating mutations in gene CPXM1: skipping.
Problem with re-annotating mutations in gene CPXM2: skipping.
Problem with re-annotating mutations in gene CPZ: skipping.
Problem with re-annotating mutations in gene CR1: skipping.
Problem with re-annotating mutations in gene CR1L: skipping.
Problem with re-annotating mutations in gene CR2: skipping.
Problem with re-annotating mutations in gene CRADD: skipping.
Problem with re-annotating mutations in gene CRAMP1L: skipping.
Problem with re-annotating mutations in gene CRAT: skipping.
Problem with re-annotating mutations in gene CRB1: skipping.
Problem with re-annotating mutations in gene CRBN: skipping.
Problem with re-annotating mutations in gene CREB3: skipping.
Problem with re-annotating mutations in gene CREB3L1: skipping.
Problem with re-annotating mutations in gene CREB3L2: skipping.
Problem with re-annotating mutations in gene CREB3L3: skipping.
Problem with re-annotating mutations in gene CREB5: skipping.
Problem with re-annotating mutations in gene CREBBP: skipping.
Problem with re-annotating mutations in gene CREG2: skipping.
Problem with re-annotating mutations in gene CRELD1: skipping.
Problem with re-annotating mutations in gene CREM: skipping.
Problem with re-annotating mutations in gene CRHBP: skipping.
Problem with re-annotating mutations in gene CRHR1: skipping.
Problem with re-annotating mutations in gene CRHR2: skipping.
Problem with re-annotating mutations in gene CRIM1: skipping.
Problem with re-annotating mutations in gene CRISP1: skipping.
Problem with re-annotating mutations in gene CRISPLD1: skipping.
Problem with re-annotating mutations in gene CRISPLD2: skipping.
Problem with re-annotating mutations in gene CRKL: skipping.
Problem with re-annotating mutations in gene CRLF3: skipping.
Problem with re-annotating mutations in gene CRMP1: skipping.
Problem with re-annotating mutations in gene CRNKL1: skipping.
Problem with re-annotating mutations in gene CRNN: skipping.
Problem with re-annotating mutations in gene CROT: skipping.
Problem with re-annotating mutations in gene CRTAC1: skipping.
Problem with re-annotating mutations in gene CRTAM: skipping.
Problem with re-annotating mutations in gene CRTC1: skipping.
Problem with re-annotating mutations in gene CRTC2: skipping.
Problem with re-annotating mutations in gene CRTC3: skipping.
Problem with re-annotating mutations in gene CRX: skipping.
Problem with re-annotating mutations in gene CRY1: skipping.
Problem with re-annotating mutations in gene CRYBA4: skipping.
Problem with re-annotating mutations in gene CRYBB1: skipping.
Problem with re-annotating mutations in gene CRYBB3: skipping.
Problem with re-annotating mutations in gene CRYBG3: skipping.
Problem with re-annotating mutations in gene CRYGB: skipping.
Problem with re-annotating mutations in gene CRYGC: skipping.
Problem with re-annotating mutations in gene CRYGS: skipping.
Problem with re-annotating mutations in gene CRYL1: skipping.
Problem with re-annotating mutations in gene CSAD: skipping.
Problem with re-annotating mutations in gene CSDA: skipping.
Problem with re-annotating mutations in gene CSDE1: skipping.
Problem with re-annotating mutations in gene CSE1L: skipping.
Problem with re-annotating mutations in gene CSF1: skipping.
Problem with re-annotating mutations in gene CSF1R: skipping.
Problem with re-annotating mutations in gene CSF2RB: skipping.
Problem with re-annotating mutations in gene CSF3R: skipping.
Problem with re-annotating mutations in gene CSGALNACT2: skipping.
Problem with re-annotating mutations in gene CSH1: skipping.
Problem with re-annotating mutations in gene CSK: skipping.
Problem with re-annotating mutations in gene CSMD1: skipping.
3100/14661 Problem with re-annotating mutations in gene CSMD2: skipping.
Problem with re-annotating mutations in gene CSMD3: skipping.
Problem with re-annotating mutations in gene CSNK1A1: skipping.
Problem with re-annotating mutations in gene CSNK1A1L: skipping.
Problem with re-annotating mutations in gene CSNK1D: skipping.
Problem with re-annotating mutations in gene CSNK1G3: skipping.
Problem with re-annotating mutations in gene CSNK2A1: skipping.
Problem with re-annotating mutations in gene CSNK2A2: skipping.
Problem with re-annotating mutations in gene CSNK2B: skipping.
Problem with re-annotating mutations in gene CSPG4: skipping.
Problem with re-annotating mutations in gene CSPG5: skipping.
Problem with re-annotating mutations in gene CSPP1: skipping.
Problem with re-annotating mutations in gene CSRNP1: skipping.
Problem with re-annotating mutations in gene CSRNP2: skipping.
Problem with re-annotating mutations in gene CSRNP3: skipping.
Problem with re-annotating mutations in gene CSRP1: skipping.
Problem with re-annotating mutations in gene CSRP2: skipping.
Problem with re-annotating mutations in gene CSRP2BP: skipping.
Problem with re-annotating mutations in gene CST9: skipping.
Problem with re-annotating mutations in gene CSTF1: skipping.
Problem with re-annotating mutations in gene CSTF2T: skipping.
Problem with re-annotating mutations in gene CSTF3: skipping.
Problem with re-annotating mutations in gene CSTL1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CT45A5: skipping.
Problem with re-annotating mutations in gene CTAGE1: skipping.
Problem with re-annotating mutations in gene CTAGE5: skipping.
Problem with re-annotating mutations in gene CTBP2: skipping.
Problem with re-annotating mutations in gene CTBS: skipping.
Problem with re-annotating mutations in gene CTCF: skipping.
Problem with re-annotating mutations in gene CTCFL: skipping.
Problem with re-annotating mutations in gene CTDP1: skipping.
Problem with re-annotating mutations in gene CTDSP1: skipping.
Problem with re-annotating mutations in gene CTDSPL: skipping.
Problem with re-annotating mutations in gene CTDSPL2: skipping.
Problem with re-annotating mutations in gene CTH: skipping.
Problem with re-annotating mutations in gene CTHRC1: skipping.
Problem with re-annotating mutations in gene CTLA4: skipping.
Problem with re-annotating mutations in gene CTNNA1: skipping.
Problem with re-annotating mutations in gene CTNNA2: skipping.
Problem with re-annotating mutations in gene CTNNA3: skipping.
Problem with re-annotating mutations in gene CTNNAL1: skipping.
Problem with re-annotating mutations in gene CTNNB1: skipping.
Problem with re-annotating mutations in gene CTNNBL1: skipping.
Problem with re-annotating mutations in gene CTNND1: skipping.
Problem with re-annotating mutations in gene CTNND2: skipping.
Problem with re-annotating mutations in gene CTNS: skipping.
Problem with re-annotating mutations in gene CTPS: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CTPS2: skipping.
Problem with re-annotating mutations in gene CTR9: skipping.
Problem with re-annotating mutations in gene CTRL: skipping.
Problem with re-annotating mutations in gene CTSA: skipping.
Problem with re-annotating mutations in gene CTSB: skipping.
Problem with re-annotating mutations in gene CTSC: skipping.
Problem with re-annotating mutations in gene CTSD: skipping.
Problem with re-annotating mutations in gene CTSF: skipping.
Problem with re-annotating mutations in gene CTSG: skipping.
Problem with re-annotating mutations in gene CTSH: skipping.
Problem with re-annotating mutations in gene CTSL1: skipping.
Problem with re-annotating mutations in gene CTSL2: skipping.
Problem with re-annotating mutations in gene CTSO: skipping.
Problem with re-annotating mutations in gene CTSS: skipping.
Problem with re-annotating mutations in gene CTTNBP2: skipping.
Problem with re-annotating mutations in gene CTTNBP2NL: skipping.
Problem with re-annotating mutations in gene CTXN3: skipping.
Problem with re-annotating mutations in gene CUBN: skipping.
Problem with re-annotating mutations in gene CUL1: skipping.
Problem with re-annotating mutations in gene CUL2: skipping.
Problem with re-annotating mutations in gene CUL4A: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CUL4B: skipping.
Problem with re-annotating mutations in gene CUL5: skipping.
Problem with re-annotating mutations in gene CUL7: skipping.
Problem with re-annotating mutations in gene CUL9: skipping.
Problem with re-annotating mutations in gene CUX1: skipping.
Problem with re-annotating mutations in gene CUX2: skipping.
Problem with re-annotating mutations in gene CUZD1: skipping.
Problem with re-annotating mutations in gene CWC22: skipping.
3200/14661 Problem with re-annotating mutations in gene CWF19L1: skipping.
Problem with re-annotating mutations in gene CWF19L2: skipping.
Problem with re-annotating mutations in gene CWH43: skipping.
Problem with re-annotating mutations in gene CX3CR1: skipping.
Problem with re-annotating mutations in gene CXADR: skipping.
Problem with re-annotating mutations in gene CXCL11: skipping.
Problem with re-annotating mutations in gene CXCL14: skipping.
Problem with re-annotating mutations in gene CXCL17: skipping.
Problem with re-annotating mutations in gene CXCL5: skipping.
Problem with re-annotating mutations in gene CXCL9: skipping.
Problem with re-annotating mutations in gene CXCR2: skipping.
Problem with re-annotating mutations in gene CXCR4: skipping.
Problem with re-annotating mutations in gene CXCR5: skipping.
Problem with re-annotating mutations in gene CXCR7: skipping.
Problem with re-annotating mutations in gene CXXC1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CXorf21: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CXorf22: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CXorf36: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CXorf57: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CXorf58: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CXorf59: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CXorf65: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CXorf66: skipping.
Problem with re-annotating mutations in gene CYB5D1: skipping.
Problem with re-annotating mutations in gene CYB5R1: skipping.
Problem with re-annotating mutations in gene CYB5R2: skipping.
Problem with re-annotating mutations in gene CYB5R4: skipping.
Problem with re-annotating mutations in gene CYBASC3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CYBB: skipping.
Problem with re-annotating mutations in gene CYBRD1: skipping.
Problem with re-annotating mutations in gene CYFIP1: skipping.
Problem with re-annotating mutations in gene CYFIP2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CYLC1: skipping.
Problem with re-annotating mutations in gene CYLC2: skipping.
Problem with re-annotating mutations in gene CYLD: skipping.
Problem with re-annotating mutations in gene CYP11A1: skipping.
Problem with re-annotating mutations in gene CYP11B1: skipping.
Problem with re-annotating mutations in gene CYP11B2: skipping.
Problem with re-annotating mutations in gene CYP17A1: skipping.
Problem with re-annotating mutations in gene CYP19A1: skipping.
Problem with re-annotating mutations in gene CYP1A1: skipping.
Problem with re-annotating mutations in gene CYP1A2: skipping.
Problem with re-annotating mutations in gene CYP1B1: skipping.
Problem with re-annotating mutations in gene CYP20A1: skipping.
Problem with re-annotating mutations in gene CYP24A1: skipping.
Problem with re-annotating mutations in gene CYP26A1: skipping.
Problem with re-annotating mutations in gene CYP27A1: skipping.
Problem with re-annotating mutations in gene CYP27B1: skipping.
Problem with re-annotating mutations in gene CYP27C1: skipping.
Problem with re-annotating mutations in gene CYP2A13: skipping.
Problem with re-annotating mutations in gene CYP2A6: skipping.
Problem with re-annotating mutations in gene CYP2A7: skipping.
Problem with re-annotating mutations in gene CYP2C18: skipping.
Problem with re-annotating mutations in gene CYP2C19: skipping.
Problem with re-annotating mutations in gene CYP2C8: skipping.
Problem with re-annotating mutations in gene CYP2C9: skipping.
Problem with re-annotating mutations in gene CYP2E1: skipping.
Problem with re-annotating mutations in gene CYP2F1: skipping.
Problem with re-annotating mutations in gene CYP2J2: skipping.
Problem with re-annotating mutations in gene CYP2R1: skipping.
Problem with re-annotating mutations in gene CYP2S1: skipping.
Problem with re-annotating mutations in gene CYP39A1: skipping.
Problem with re-annotating mutations in gene CYP3A43: skipping.
Problem with re-annotating mutations in gene CYP3A5: skipping.
Problem with re-annotating mutations in gene CYP3A7: skipping.
Problem with re-annotating mutations in gene CYP46A1: skipping.
Problem with re-annotating mutations in gene CYP4A11: skipping.
Problem with re-annotating mutations in gene CYP4A22: skipping.
Problem with re-annotating mutations in gene CYP4B1: skipping.
Problem with re-annotating mutations in gene CYP4F11: skipping.
Problem with re-annotating mutations in gene CYP4F12: skipping.
Problem with re-annotating mutations in gene CYP4F2: skipping.
Problem with re-annotating mutations in gene CYP4F22: skipping.
Problem with re-annotating mutations in gene CYP4F3: skipping.
Problem with re-annotating mutations in gene CYP4F8: skipping.
Problem with re-annotating mutations in gene CYP4V2: skipping.
Problem with re-annotating mutations in gene CYP4Z1: skipping.
3300/14661 Problem with re-annotating mutations in gene CYP51A1: skipping.
Problem with re-annotating mutations in gene CYP7A1: skipping.
Problem with re-annotating mutations in gene CYP7B1: skipping.
Problem with re-annotating mutations in gene CYP8B1: skipping.
Problem with re-annotating mutations in gene CYR61: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene CYSLTR1: skipping.
Problem with re-annotating mutations in gene CYSLTR2: skipping.
Problem with re-annotating mutations in gene CYTH1: skipping.
Problem with re-annotating mutations in gene CYTH3: skipping.
Problem with re-annotating mutations in gene CYTIP: skipping.
Problem with re-annotating mutations in gene CYTL1: skipping.
Problem with re-annotating mutations in gene CYTSA: skipping.
Problem with re-annotating mutations in gene D4S234E: skipping.
Problem with re-annotating mutations in gene DAAM1: skipping.
Problem with re-annotating mutations in gene DAAM2: skipping.
Problem with re-annotating mutations in gene DAB1: skipping.
Problem with re-annotating mutations in gene DAB2: skipping.
Problem with re-annotating mutations in gene DAB2IP: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene DACH2: skipping.
Problem with re-annotating mutations in gene DACT1: skipping.
Problem with re-annotating mutations in gene DAD1: skipping.
Problem with re-annotating mutations in gene DAG1: skipping.
Problem with re-annotating mutations in gene DAGLA: skipping.
Problem with re-annotating mutations in gene DAGLB: skipping.
Problem with re-annotating mutations in gene DAK: skipping.
Problem with re-annotating mutations in gene DALRD3: skipping.
Problem with re-annotating mutations in gene DAO: skipping.
Problem with re-annotating mutations in gene DAOA: skipping.
Problem with re-annotating mutations in gene DAPK1: skipping.
Problem with re-annotating mutations in gene DAPP1: skipping.
Problem with re-annotating mutations in gene DARC: skipping.
Problem with re-annotating mutations in gene DARS: skipping.
Problem with re-annotating mutations in gene DARS2: skipping.
Problem with re-annotating mutations in gene DAZL: skipping.
Problem with re-annotating mutations in gene DBC1: skipping.
Problem with re-annotating mutations in gene DBF4: skipping.
Problem with re-annotating mutations in gene DBF4B: skipping.
Problem with re-annotating mutations in gene DBH: skipping.
Problem with re-annotating mutations in gene DBR1: skipping.
Problem with re-annotating mutations in gene DBX2: skipping.
Problem with re-annotating mutations in gene DCAF11: skipping.
Problem with re-annotating mutations in gene DCAF12: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene DCAF12L1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene DCAF12L2: skipping.
Problem with re-annotating mutations in gene DCAF13: skipping.
Problem with re-annotating mutations in gene DCAF17: skipping.
Problem with re-annotating mutations in gene DCAF4: skipping.
Problem with re-annotating mutations in gene DCAF4L1: skipping.
Problem with re-annotating mutations in gene DCAF4L2: skipping.
Problem with re-annotating mutations in gene DCAF5: skipping.
Problem with re-annotating mutations in gene DCAF6: skipping.
Problem with re-annotating mutations in gene DCAF7: skipping.
Problem with re-annotating mutations in gene DCAF8: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene DCAF8L1: skipping.
Problem with re-annotating mutations in gene DCBLD2: skipping.
Problem with re-annotating mutations in gene DCC: skipping.
Problem with re-annotating mutations in gene DCDC1: skipping.
Problem with re-annotating mutations in gene DCDC2: skipping.
Problem with re-annotating mutations in gene DCHS1: skipping.
Problem with re-annotating mutations in gene DCHS2: skipping.
Problem with re-annotating mutations in gene DCK: skipping.
Problem with re-annotating mutations in gene DCLK1: skipping.
Problem with re-annotating mutations in gene DCLK2: skipping.
Problem with re-annotating mutations in gene DCLK3: skipping.
Problem with re-annotating mutations in gene DCLRE1A: skipping.
Problem with re-annotating mutations in gene DCLRE1B: skipping.
Problem with re-annotating mutations in gene DCLRE1C: skipping.
Problem with re-annotating mutations in gene DCN: skipping.
Problem with re-annotating mutations in gene DCP1B: skipping.
Problem with re-annotating mutations in gene DCP2: skipping.
Problem with re-annotating mutations in gene DCPS: skipping.
Problem with re-annotating mutations in gene DCST1: skipping.
Problem with re-annotating mutations in gene DCST2: skipping.
Problem with re-annotating mutations in gene DCT: skipping.
Problem with re-annotating mutations in gene DCTD: skipping.
Problem with re-annotating mutations in gene DCTN1: skipping.
Problem with re-annotating mutations in gene DCTN2: skipping.
Problem with re-annotating mutations in gene DCTPP1: skipping.
Problem with re-annotating mutations in gene DCUN1D1: skipping.
3400/14661 Problem with re-annotating mutations in gene DCUN1D3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene DCX: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene DDAH2: skipping.
Problem with re-annotating mutations in gene DDB1: skipping.
Problem with re-annotating mutations in gene DDHD1: skipping.
Problem with re-annotating mutations in gene DDHD2: skipping.
Problem with re-annotating mutations in gene DDI1: skipping.
Problem with re-annotating mutations in gene DDI2: skipping.
Problem with re-annotating mutations in gene DDO: skipping.
Problem with re-annotating mutations in gene DDOST: skipping.
WARNING: unknown chromosome(s):
    'chr6_qbl_hap2'

Problem with re-annotating mutations in gene DDR1: skipping.
Problem with re-annotating mutations in gene DDR2: skipping.
Problem with re-annotating mutations in gene DDX1: skipping.
Problem with re-annotating mutations in gene DDX10: skipping.
Problem with re-annotating mutations in gene DDX11: skipping.
Problem with re-annotating mutations in gene DDX17: skipping.
Problem with re-annotating mutations in gene DDX18: skipping.
Problem with re-annotating mutations in gene DDX19A: skipping.
Problem with re-annotating mutations in gene DDX19B: skipping.
Problem with re-annotating mutations in gene DDX20: skipping.
Problem with re-annotating mutations in gene DDX21: skipping.
Problem with re-annotating mutations in gene DDX23: skipping.
Problem with re-annotating mutations in gene DDX24: skipping.
Problem with re-annotating mutations in gene DDX27: skipping.
Problem with re-annotating mutations in gene DDX28: skipping.
Problem with re-annotating mutations in gene DDX31: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene DDX3X: skipping.
Problem with re-annotating mutations in gene DDX4: skipping.
Problem with re-annotating mutations in gene DDX41: skipping.
Problem with re-annotating mutations in gene DDX42: skipping.
Problem with re-annotating mutations in gene DDX46: skipping.
Problem with re-annotating mutations in gene DDX47: skipping.
Problem with re-annotating mutations in gene DDX49: skipping.
Problem with re-annotating mutations in gene DDX5: skipping.
Problem with re-annotating mutations in gene DDX50: skipping.
Problem with re-annotating mutations in gene DDX52: skipping.
Problem with re-annotating mutations in gene DDX54: skipping.
Problem with re-annotating mutations in gene DDX55: skipping.
Problem with re-annotating mutations in gene DDX56: skipping.
Problem with re-annotating mutations in gene DDX58: skipping.
Problem with re-annotating mutations in gene DDX6: skipping.
Problem with re-annotating mutations in gene DDX60: skipping.
Problem with re-annotating mutations in gene DDX60L: skipping.
Problem with re-annotating mutations in gene DECR1: skipping.
Problem with re-annotating mutations in gene DEF6: skipping.
Problem with re-annotating mutations in gene DEFB112: skipping.
Problem with re-annotating mutations in gene DEFB113: skipping.
Problem with re-annotating mutations in gene DEFB116: skipping.
Problem with re-annotating mutations in gene DEFB119: skipping.
Problem with re-annotating mutations in gene DEFB129: skipping.
Problem with re-annotating mutations in gene DEFB135: skipping.
Problem with re-annotating mutations in gene DEGS1: skipping.
Problem with re-annotating mutations in gene DEM1: skipping.
Problem with re-annotating mutations in gene DENND1A: skipping.
Problem with re-annotating mutations in gene DENND1B: skipping.
Problem with re-annotating mutations in gene DENND1C: skipping.
Problem with re-annotating mutations in gene DENND2C: skipping.
Problem with re-annotating mutations in gene DENND2D: skipping.
Problem with re-annotating mutations in gene DENND3: skipping.
Problem with re-annotating mutations in gene DENND4A: skipping.
Problem with re-annotating mutations in gene DENND4B: skipping.
Problem with re-annotating mutations in gene DENND4C: skipping.
Problem with re-annotating mutations in gene DENND5A: skipping.
Problem with re-annotating mutations in gene DENND5B: skipping.
Problem with re-annotating mutations in gene DEPDC1: skipping.
Problem with re-annotating mutations in gene DEPDC4: skipping.
Problem with re-annotating mutations in gene DEPDC5: skipping.
Problem with re-annotating mutations in gene DEPDC6: skipping.
Problem with re-annotating mutations in gene DEPDC7: skipping.
Problem with re-annotating mutations in gene DERA: skipping.
Problem with re-annotating mutations in gene DERL2: skipping.
3500/14661 Problem with re-annotating mutations in gene DFFA: skipping.
Problem with re-annotating mutations in gene DFFB: skipping.
Problem with re-annotating mutations in gene DFNA5: skipping.
Problem with re-annotating mutations in gene DFNB31: skipping.
Problem with re-annotating mutations in gene DGAT2: skipping.
Problem with re-annotating mutations in gene DGCR2: skipping.
Problem with re-annotating mutations in gene DGCR8: skipping.
Problem with re-annotating mutations in gene DGKB: skipping.
Problem with re-annotating mutations in gene DGKD: skipping.
Problem with re-annotating mutations in gene DGKE: skipping.
Problem with re-annotating mutations in gene DGKG: skipping.
Problem with re-annotating mutations in gene DGKH: skipping.
Problem with re-annotating mutations in gene DGKI: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene DGKK: skipping.
Problem with re-annotating mutations in gene DGKZ: skipping.
Problem with re-annotating mutations in gene DHCR24: skipping.
Problem with re-annotating mutations in gene DHCR7: skipping.
Problem with re-annotating mutations in gene DHFRL1: skipping.
Problem with re-annotating mutations in gene DHODH: skipping.
Problem with re-annotating mutations in gene DHRS2: skipping.
Problem with re-annotating mutations in gene DHRS3: skipping.
Problem with re-annotating mutations in gene DHRS7C: skipping.
Problem with re-annotating mutations in gene DHTKD1: skipping.
Problem with re-annotating mutations in gene DHX15: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene DHX16: skipping.
Problem with re-annotating mutations in gene DHX29: skipping.
Problem with re-annotating mutations in gene DHX30: skipping.
Problem with re-annotating mutations in gene DHX32: skipping.
Problem with re-annotating mutations in gene DHX35: skipping.
Problem with re-annotating mutations in gene DHX36: skipping.
Problem with re-annotating mutations in gene DHX37: skipping.
Problem with re-annotating mutations in gene DHX38: skipping.
Problem with re-annotating mutations in gene DHX40: skipping.
Problem with re-annotating mutations in gene DHX57: skipping.
Problem with re-annotating mutations in gene DHX58: skipping.
Problem with re-annotating mutations in gene DHX8: skipping.
Problem with re-annotating mutations in gene DHX9: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene DIAPH2: skipping.
Problem with re-annotating mutations in gene DIAPH3: skipping.
Problem with re-annotating mutations in gene DICER1: skipping.
Problem with re-annotating mutations in gene DIDO1: skipping.
Problem with re-annotating mutations in gene DIO3: skipping.
Problem with re-annotating mutations in gene DIP2A: skipping.
Problem with re-annotating mutations in gene DIP2B: skipping.
Problem with re-annotating mutations in gene DIP2C: skipping.
Problem with re-annotating mutations in gene DIRAS2: skipping.
Problem with re-annotating mutations in gene DIS3: skipping.
Problem with re-annotating mutations in gene DIS3L: skipping.
Problem with re-annotating mutations in gene DIS3L2: skipping.
Problem with re-annotating mutations in gene DISC1: skipping.
Problem with re-annotating mutations in gene DISP1: skipping.
Problem with re-annotating mutations in gene DISP2: skipping.
Problem with re-annotating mutations in gene DIXDC1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene DKC1: skipping.
Problem with re-annotating mutations in gene DKK1: skipping.
Problem with re-annotating mutations in gene DKK2: skipping.
Problem with re-annotating mutations in gene DKK3: skipping.
Problem with re-annotating mutations in gene DKK4: skipping.
Problem with re-annotating mutations in gene DLAT: skipping.
Problem with re-annotating mutations in gene DLC1: skipping.
Problem with re-annotating mutations in gene DLEC1: skipping.
Problem with re-annotating mutations in gene DLG1: skipping.
Problem with re-annotating mutations in gene DLG2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene DLG3: skipping.
Problem with re-annotating mutations in gene DLG4: skipping.
Problem with re-annotating mutations in gene DLG5: skipping.
Problem with re-annotating mutations in gene DLGAP1: skipping.
Problem with re-annotating mutations in gene DLGAP2: skipping.
Problem with re-annotating mutations in gene DLGAP3: skipping.
Problem with re-annotating mutations in gene DLGAP4: skipping.
Problem with re-annotating mutations in gene DLGAP5: skipping.
Problem with re-annotating mutations in gene DLK1: skipping.
Problem with re-annotating mutations in gene DLK2: skipping.
Problem with re-annotating mutations in gene DLL1: skipping.
Problem with re-annotating mutations in gene DLL3: skipping.
Problem with re-annotating mutations in gene DLL4: skipping.
3600/14661 Problem with re-annotating mutations in gene DLX3: skipping.
Problem with re-annotating mutations in gene DLX4: skipping.
Problem with re-annotating mutations in gene DLX5: skipping.
Problem with re-annotating mutations in gene DMBT1: skipping.
Problem with re-annotating mutations in gene DMC1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene DMD: skipping.
Problem with re-annotating mutations in gene DMGDH: skipping.
Problem with re-annotating mutations in gene DMKN: skipping.
Problem with re-annotating mutations in gene DMP1: skipping.
Problem with re-annotating mutations in gene DMRT2: skipping.
Problem with re-annotating mutations in gene DMRT3: skipping.
Problem with re-annotating mutations in gene DMRTA1: skipping.
Problem with re-annotating mutations in gene DMRTC2: skipping.
Problem with re-annotating mutations in gene DMTF1: skipping.
Problem with re-annotating mutations in gene DMWD: skipping.
Problem with re-annotating mutations in gene DMXL1: skipping.
Problem with re-annotating mutations in gene DMXL2: skipping.
Problem with re-annotating mutations in gene DNA2: skipping.
Problem with re-annotating mutations in gene DNAH1: skipping.
Problem with re-annotating mutations in gene DNAH10: skipping.
Problem with re-annotating mutations in gene DNAH11: skipping.
Problem with re-annotating mutations in gene DNAH2: skipping.
Problem with re-annotating mutations in gene DNAH3: skipping.
Problem with re-annotating mutations in gene DNAH5: skipping.
Problem with re-annotating mutations in gene DNAH7: skipping.
Problem with re-annotating mutations in gene DNAH8: skipping.
Problem with re-annotating mutations in gene DNAH9: skipping.
Problem with re-annotating mutations in gene DNAI1: skipping.
Problem with re-annotating mutations in gene DNAI2: skipping.
Problem with re-annotating mutations in gene DNAJA1: skipping.
Problem with re-annotating mutations in gene DNAJA3: skipping.
Problem with re-annotating mutations in gene DNAJA4: skipping.
Problem with re-annotating mutations in gene DNAJB11: skipping.
Problem with re-annotating mutations in gene DNAJB12: skipping.
Problem with re-annotating mutations in gene DNAJB13: skipping.
Problem with re-annotating mutations in gene DNAJB14: skipping.
Problem with re-annotating mutations in gene DNAJB3: skipping.
Problem with re-annotating mutations in gene DNAJB4: skipping.
Problem with re-annotating mutations in gene DNAJB5: skipping.
Problem with re-annotating mutations in gene DNAJB8: skipping.
Problem with re-annotating mutations in gene DNAJB9: skipping.
Problem with re-annotating mutations in gene DNAJC10: skipping.
Problem with re-annotating mutations in gene DNAJC11: skipping.
Problem with re-annotating mutations in gene DNAJC13: skipping.
Problem with re-annotating mutations in gene DNAJC14: skipping.
Problem with re-annotating mutations in gene DNAJC16: skipping.
Problem with re-annotating mutations in gene DNAJC17: skipping.
Problem with re-annotating mutations in gene DNAJC18: skipping.
Problem with re-annotating mutations in gene DNAJC19: skipping.
Problem with re-annotating mutations in gene DNAJC2: skipping.
Problem with re-annotating mutations in gene DNAJC21: skipping.
Problem with re-annotating mutations in gene DNAJC22: skipping.
Problem with re-annotating mutations in gene DNAJC24: skipping.
Problem with re-annotating mutations in gene DNAJC25: skipping.
Problem with re-annotating mutations in gene DNAJC27: skipping.
Problem with re-annotating mutations in gene DNAJC28: skipping.
Problem with re-annotating mutations in gene DNAJC30: skipping.
Problem with re-annotating mutations in gene DNAJC5B: skipping.
Problem with re-annotating mutations in gene DNAJC5G: skipping.
Problem with re-annotating mutations in gene DNAJC6: skipping.
Problem with re-annotating mutations in gene DNAJC7: skipping.
Problem with re-annotating mutations in gene DNAJC8: skipping.
Problem with re-annotating mutations in gene DNASE1L3: skipping.
Problem with re-annotating mutations in gene DNER: skipping.
Problem with re-annotating mutations in gene DNHD1: skipping.
Problem with re-annotating mutations in gene DNM1: skipping.
Problem with re-annotating mutations in gene DNM1L: skipping.
Problem with re-annotating mutations in gene DNM2: skipping.
Problem with re-annotating mutations in gene DNM3: skipping.
Problem with re-annotating mutations in gene DNMBP: skipping.
Problem with re-annotating mutations in gene DNMT1: skipping.
Problem with re-annotating mutations in gene DNMT3A: skipping.
Problem with re-annotating mutations in gene DNMT3B: skipping.
Problem with re-annotating mutations in gene DNTT: skipping.
Problem with re-annotating mutations in gene DNTTIP2: skipping.
Problem with re-annotating mutations in gene DOC2A: skipping.
Problem with re-annotating mutations in gene DOCK1: skipping.
Problem with re-annotating mutations in gene DOCK10: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene DOCK11: skipping.
Problem with re-annotating mutations in gene DOCK2: skipping.
Problem with re-annotating mutations in gene DOCK3: skipping.
Problem with re-annotating mutations in gene DOCK4: skipping.
Problem with re-annotating mutations in gene DOCK5: skipping.
Problem with re-annotating mutations in gene DOCK6: skipping.
Problem with re-annotating mutations in gene DOCK7: skipping.
Problem with re-annotating mutations in gene DOCK8: skipping.
Problem with re-annotating mutations in gene DOCK9: skipping.
3700/14661 Problem with re-annotating mutations in gene DOK1: skipping.
Problem with re-annotating mutations in gene DOK5: skipping.
Problem with re-annotating mutations in gene DOK6: skipping.
Problem with re-annotating mutations in gene DOLK: skipping.
Problem with re-annotating mutations in gene DONSON: skipping.
Problem with re-annotating mutations in gene DOPEY1: skipping.
Problem with re-annotating mutations in gene DOPEY2: skipping.
Problem with re-annotating mutations in gene DOT1L: skipping.
Problem with re-annotating mutations in gene DPAGT1: skipping.
Problem with re-annotating mutations in gene DPF2: skipping.
Problem with re-annotating mutations in gene DPF3: skipping.
Problem with re-annotating mutations in gene DPH1: skipping.
Problem with re-annotating mutations in gene DPP10: skipping.
Problem with re-annotating mutations in gene DPP3: skipping.
Problem with re-annotating mutations in gene DPP4: skipping.
Problem with re-annotating mutations in gene DPP6: skipping.
Problem with re-annotating mutations in gene DPP7: skipping.
Problem with re-annotating mutations in gene DPP8: skipping.
Problem with re-annotating mutations in gene DPY19L1: skipping.
Problem with re-annotating mutations in gene DPY19L2: skipping.
Problem with re-annotating mutations in gene DPY19L3: skipping.
Problem with re-annotating mutations in gene DPY30: skipping.
Problem with re-annotating mutations in gene DPYD: skipping.
Problem with re-annotating mutations in gene DPYS: skipping.
Problem with re-annotating mutations in gene DPYSL2: skipping.
Problem with re-annotating mutations in gene DPYSL3: skipping.
Problem with re-annotating mutations in gene DPYSL4: skipping.
Problem with re-annotating mutations in gene DRAM2: skipping.
Problem with re-annotating mutations in gene DRD2: skipping.
Problem with re-annotating mutations in gene DRD3: skipping.
Problem with re-annotating mutations in gene DRD5: skipping.
Problem with re-annotating mutations in gene DRG1: skipping.
Problem with re-annotating mutations in gene DRGX: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene DRP2: skipping.
Problem with re-annotating mutations in gene DSC1: skipping.
Problem with re-annotating mutations in gene DSC2: skipping.
Problem with re-annotating mutations in gene DSC3: skipping.
Problem with re-annotating mutations in gene DSCAM: skipping.
Problem with re-annotating mutations in gene DSCAML1: skipping.
Problem with re-annotating mutations in gene DSCR3: skipping.
Problem with re-annotating mutations in gene DSE: skipping.
Problem with re-annotating mutations in gene DSEL: skipping.
Problem with re-annotating mutations in gene DSG1: skipping.
Problem with re-annotating mutations in gene DSG2: skipping.
Problem with re-annotating mutations in gene DSG3: skipping.
Problem with re-annotating mutations in gene DSG4: skipping.
Problem with re-annotating mutations in gene DSP: skipping.
Problem with re-annotating mutations in gene DSPP: skipping.
Problem with re-annotating mutations in gene DST: skipping.
Problem with re-annotating mutations in gene DSTN: skipping.
Problem with re-annotating mutations in gene DSTYK: skipping.
Problem with re-annotating mutations in gene DTD1: skipping.
Problem with re-annotating mutations in gene DTL: skipping.
Problem with re-annotating mutations in gene DTNA: skipping.
Problem with re-annotating mutations in gene DTWD1: skipping.
Problem with re-annotating mutations in gene DTWD2: skipping.
Problem with re-annotating mutations in gene DTX1: skipping.
Problem with re-annotating mutations in gene DTX2: skipping.
Problem with re-annotating mutations in gene DTX3L: skipping.
Problem with re-annotating mutations in gene DTX4: skipping.
Problem with re-annotating mutations in gene DUOX1: skipping.
Problem with re-annotating mutations in gene DUOX2: skipping.
Problem with re-annotating mutations in gene DUOXA1: skipping.
Problem with re-annotating mutations in gene DUOXA2: skipping.
Problem with re-annotating mutations in gene DUS4L: skipping.
Problem with re-annotating mutations in gene DUSP1: skipping.
Problem with re-annotating mutations in gene DUSP10: skipping.
Problem with re-annotating mutations in gene DUSP11: skipping.
Problem with re-annotating mutations in gene DUSP13: skipping.
Problem with re-annotating mutations in gene DUSP16: skipping.
3800/14661 Problem with re-annotating mutations in gene DUSP19: skipping.
Problem with re-annotating mutations in gene DUSP22: skipping.
Problem with re-annotating mutations in gene DUSP27: skipping.
Problem with re-annotating mutations in gene DUSP5: skipping.
Problem with re-annotating mutations in gene DUSP6: skipping.
Problem with re-annotating mutations in gene DUSP7: skipping.
Problem with re-annotating mutations in gene DUXA: skipping.
Problem with re-annotating mutations in gene DVL2: skipping.
Problem with re-annotating mutations in gene DVL3: skipping.
Problem with re-annotating mutations in gene DYDC1: skipping.
Problem with re-annotating mutations in gene DYDC2: skipping.
Problem with re-annotating mutations in gene DYM: skipping.
Problem with re-annotating mutations in gene DYNC1H1: skipping.
Problem with re-annotating mutations in gene DYNC1I1: skipping.
Problem with re-annotating mutations in gene DYNC1I2: skipping.
Problem with re-annotating mutations in gene DYNC1LI2: skipping.
Problem with re-annotating mutations in gene DYNC2H1: skipping.
Problem with re-annotating mutations in gene DYNC2LI1: skipping.
Problem with re-annotating mutations in gene DYRK1A: skipping.
Problem with re-annotating mutations in gene DYRK1B: skipping.
Problem with re-annotating mutations in gene DYRK3: skipping.
Problem with re-annotating mutations in gene DYRK4: skipping.
Problem with re-annotating mutations in gene DYSF: skipping.
Problem with re-annotating mutations in gene DYTN: skipping.
Problem with re-annotating mutations in gene DZIP1: skipping.
Problem with re-annotating mutations in gene DZIP1L: skipping.
Problem with re-annotating mutations in gene DZIP3: skipping.
Problem with re-annotating mutations in gene E2F3: skipping.
Problem with re-annotating mutations in gene E2F5: skipping.
Problem with re-annotating mutations in gene E2F7: skipping.
Problem with re-annotating mutations in gene E2F8: skipping.
Problem with re-annotating mutations in gene EAPP: skipping.
Problem with re-annotating mutations in gene EBAG9: skipping.
Problem with re-annotating mutations in gene EBF1: skipping.
Problem with re-annotating mutations in gene EBF2: skipping.
Problem with re-annotating mutations in gene EBF3: skipping.
Problem with re-annotating mutations in gene EBNA1BP2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene EBP: skipping.
Problem with re-annotating mutations in gene ECD: skipping.
Problem with re-annotating mutations in gene ECE1: skipping.
Problem with re-annotating mutations in gene ECE2: skipping.
Problem with re-annotating mutations in gene ECHDC1: skipping.
Problem with re-annotating mutations in gene ECHDC2: skipping.
Problem with re-annotating mutations in gene ECHS1: skipping.
Problem with re-annotating mutations in gene ECM2: skipping.
Problem with re-annotating mutations in gene ECSIT: skipping.
Problem with re-annotating mutations in gene ECT2: skipping.
Problem with re-annotating mutations in gene ECT2L: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene EDA: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene EDA2R: skipping.
Problem with re-annotating mutations in gene EDAR: skipping.
Problem with re-annotating mutations in gene EDC4: skipping.
Problem with re-annotating mutations in gene EDEM1: skipping.
Problem with re-annotating mutations in gene EDEM2: skipping.
Problem with re-annotating mutations in gene EDEM3: skipping.
Problem with re-annotating mutations in gene EDIL3: skipping.
Problem with re-annotating mutations in gene EDNRA: skipping.
Problem with re-annotating mutations in gene EDNRB: skipping.
Problem with re-annotating mutations in gene EEA1: skipping.
Problem with re-annotating mutations in gene EED: skipping.
Problem with re-annotating mutations in gene EEF1A1: skipping.
Problem with re-annotating mutations in gene EEF2: skipping.
Problem with re-annotating mutations in gene EEFSEC: skipping.
Problem with re-annotating mutations in gene EEPD1: skipping.
Problem with re-annotating mutations in gene EFCAB1: skipping.
Problem with re-annotating mutations in gene EFCAB2: skipping.
Problem with re-annotating mutations in gene EFCAB3: skipping.
Problem with re-annotating mutations in gene EFCAB4B: skipping.
Problem with re-annotating mutations in gene EFCAB5: skipping.
Problem with re-annotating mutations in gene EFCAB6: skipping.
Problem with re-annotating mutations in gene EFCAB7: skipping.
Problem with re-annotating mutations in gene EFEMP1: skipping.
3900/14661 Problem with re-annotating mutations in gene EFHA1: skipping.
Problem with re-annotating mutations in gene EFHA2: skipping.
Problem with re-annotating mutations in gene EFHB: skipping.
Problem with re-annotating mutations in gene EFHC1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene EFHC2: skipping.
Problem with re-annotating mutations in gene EFHD1: skipping.
Problem with re-annotating mutations in gene EFNA5: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene EFNB1: skipping.
Problem with re-annotating mutations in gene EFNB3: skipping.
Problem with re-annotating mutations in gene EFR3A: skipping.
Problem with re-annotating mutations in gene EFTUD2: skipping.
Problem with re-annotating mutations in gene EGF: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene EGFL6: skipping.
Problem with re-annotating mutations in gene EGFLAM: skipping.
Problem with re-annotating mutations in gene EGFR: skipping.
Problem with re-annotating mutations in gene EGLN2: skipping.
Problem with re-annotating mutations in gene EGLN3: skipping.
Problem with re-annotating mutations in gene EGR1: skipping.
Problem with re-annotating mutations in gene EGR2: skipping.
Problem with re-annotating mutations in gene EGR3: skipping.
Problem with re-annotating mutations in gene EHBP1: skipping.
Problem with re-annotating mutations in gene EHBP1L1: skipping.
Problem with re-annotating mutations in gene EHD1: skipping.
Problem with re-annotating mutations in gene EHD2: skipping.
Problem with re-annotating mutations in gene EHD3: skipping.
Problem with re-annotating mutations in gene EHD4: skipping.
Problem with re-annotating mutations in gene EHHADH: skipping.
Problem with re-annotating mutations in gene EHMT1: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene EHMT2: skipping.
Problem with re-annotating mutations in gene EID3: skipping.
Problem with re-annotating mutations in gene EIF2A: skipping.
Problem with re-annotating mutations in gene EIF2AK1: skipping.
Problem with re-annotating mutations in gene EIF2AK3: skipping.
Problem with re-annotating mutations in gene EIF2AK4: skipping.
Problem with re-annotating mutations in gene EIF2B1: skipping.
Problem with re-annotating mutations in gene EIF2B3: skipping.
Problem with re-annotating mutations in gene EIF2B5: skipping.
Problem with re-annotating mutations in gene EIF2C1: skipping.
Problem with re-annotating mutations in gene EIF2C2: skipping.
Problem with re-annotating mutations in gene EIF2C3: skipping.
Problem with re-annotating mutations in gene EIF2C4: skipping.
Problem with re-annotating mutations in gene EIF3A: skipping.
Problem with re-annotating mutations in gene EIF3B: skipping.
Problem with re-annotating mutations in gene EIF3D: skipping.
Problem with re-annotating mutations in gene EIF3E: skipping.
Problem with re-annotating mutations in gene EIF3F: skipping.
Problem with re-annotating mutations in gene EIF3I: skipping.
Problem with re-annotating mutations in gene EIF3J: skipping.
Problem with re-annotating mutations in gene EIF3L: skipping.
Problem with re-annotating mutations in gene EIF4A2: skipping.
Problem with re-annotating mutations in gene EIF4B: skipping.
Problem with re-annotating mutations in gene EIF4E2: skipping.
Problem with re-annotating mutations in gene EIF4ENIF1: skipping.
Problem with re-annotating mutations in gene EIF4G1: skipping.
Problem with re-annotating mutations in gene EIF4G2: skipping.
Problem with re-annotating mutations in gene EIF4G3: skipping.
Problem with re-annotating mutations in gene EIF5: skipping.
Problem with re-annotating mutations in gene EIF5A: skipping.
Problem with re-annotating mutations in gene EIF5B: skipping.
Problem with re-annotating mutations in gene ELAC1: skipping.
Problem with re-annotating mutations in gene ELAVL1: skipping.
Problem with re-annotating mutations in gene ELAVL2: skipping.
Problem with re-annotating mutations in gene ELAVL3: skipping.
Problem with re-annotating mutations in gene ELAVL4: skipping.
Problem with re-annotating mutations in gene ELF1: skipping.
Problem with re-annotating mutations in gene ELF2: skipping.
Problem with re-annotating mutations in gene ELF3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ELF4: skipping.
Problem with re-annotating mutations in gene ELF5: skipping.
Problem with re-annotating mutations in gene ELK3: skipping.
Problem with re-annotating mutations in gene ELK4: skipping.
Problem with re-annotating mutations in gene ELL: skipping.
Problem with re-annotating mutations in gene ELL2: skipping.
Problem with re-annotating mutations in gene ELL3: skipping.
Problem with re-annotating mutations in gene ELMO1: skipping.
Problem with re-annotating mutations in gene ELMO2: skipping.
Problem with re-annotating mutations in gene ELMO3: skipping.
Problem with re-annotating mutations in gene ELMOD1: skipping.
Problem with re-annotating mutations in gene ELMOD2: skipping.
4000/14661 Problem with re-annotating mutations in gene ELMOD3: skipping.
Problem with re-annotating mutations in gene ELOVL2: skipping.
Problem with re-annotating mutations in gene ELOVL4: skipping.
Problem with re-annotating mutations in gene ELP2: skipping.
Problem with re-annotating mutations in gene ELP3: skipping.
Problem with re-annotating mutations in gene ELP4: skipping.
Problem with re-annotating mutations in gene ELTD1: skipping.
Problem with re-annotating mutations in gene EMB: skipping.
Problem with re-annotating mutations in gene EME1: skipping.
Problem with re-annotating mutations in gene EMID1: skipping.
Problem with re-annotating mutations in gene EMILIN2: skipping.
Problem with re-annotating mutations in gene EML1: skipping.
Problem with re-annotating mutations in gene EML2: skipping.
Problem with re-annotating mutations in gene EML4: skipping.
Problem with re-annotating mutations in gene EML5: skipping.
Problem with re-annotating mutations in gene EMR1: skipping.
Problem with re-annotating mutations in gene EMR2: skipping.
Problem with re-annotating mutations in gene EMR3: skipping.
Problem with re-annotating mutations in gene EMX1: skipping.
Problem with re-annotating mutations in gene EMX2: skipping.
Problem with re-annotating mutations in gene ENAH: skipping.
Problem with re-annotating mutations in gene ENAM: skipping.
Problem with re-annotating mutations in gene ENC1: skipping.
Problem with re-annotating mutations in gene ENDOD1: skipping.
Problem with re-annotating mutations in gene ENG: skipping.
Problem with re-annotating mutations in gene ENKUR: skipping.
Problem with re-annotating mutations in gene ENO2: skipping.
Problem with re-annotating mutations in gene ENO3: skipping.
Problem with re-annotating mutations in gene ENOPH1: skipping.
Problem with re-annotating mutations in gene ENOX1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ENOX2: skipping.
Problem with re-annotating mutations in gene ENPEP: skipping.
Problem with re-annotating mutations in gene ENPP1: skipping.
Problem with re-annotating mutations in gene ENPP2: skipping.
Problem with re-annotating mutations in gene ENPP3: skipping.
Problem with re-annotating mutations in gene ENPP5: skipping.
Problem with re-annotating mutations in gene ENPP6: skipping.
Problem with re-annotating mutations in gene ENPP7: skipping.
Problem with re-annotating mutations in gene ENTHD1: skipping.
Problem with re-annotating mutations in gene ENTPD1: skipping.
Problem with re-annotating mutations in gene ENTPD3: skipping.
Problem with re-annotating mutations in gene ENTPD4: skipping.
Problem with re-annotating mutations in gene ENTPD5: skipping.
Problem with re-annotating mutations in gene ENTPD6: skipping.
Problem with re-annotating mutations in gene ENTPD7: skipping.
Problem with re-annotating mutations in gene EOMES: skipping.
Problem with re-annotating mutations in gene EP300: skipping.
Problem with re-annotating mutations in gene EP400: skipping.
Problem with re-annotating mutations in gene EPAS1: skipping.
Problem with re-annotating mutations in gene EPB41: skipping.
Problem with re-annotating mutations in gene EPB41L1: skipping.
Problem with re-annotating mutations in gene EPB41L2: skipping.
Problem with re-annotating mutations in gene EPB41L3: skipping.
Problem with re-annotating mutations in gene EPB41L4A: skipping.
Problem with re-annotating mutations in gene EPB41L4B: skipping.
Problem with re-annotating mutations in gene EPB41L5: skipping.
Problem with re-annotating mutations in gene EPB42: skipping.
Problem with re-annotating mutations in gene EPC1: skipping.
Problem with re-annotating mutations in gene EPHA1: skipping.
Problem with re-annotating mutations in gene EPHA10: skipping.
Problem with re-annotating mutations in gene EPHA2: skipping.
Problem with re-annotating mutations in gene EPHA3: skipping.
Problem with re-annotating mutations in gene EPHA4: skipping.
Problem with re-annotating mutations in gene EPHA5: skipping.
Problem with re-annotating mutations in gene EPHA6: skipping.
Problem with re-annotating mutations in gene EPHA7: skipping.
Problem with re-annotating mutations in gene EPHA8: skipping.
Problem with re-annotating mutations in gene EPHB1: skipping.
Problem with re-annotating mutations in gene EPHB2: skipping.
Problem with re-annotating mutations in gene EPHB3: skipping.
Problem with re-annotating mutations in gene EPHB4: skipping.
Problem with re-annotating mutations in gene EPHB6: skipping.
Problem with re-annotating mutations in gene EPHX1: skipping.
Problem with re-annotating mutations in gene EPHX4: skipping.
Problem with re-annotating mutations in gene EPM2AIP1: skipping.
Problem with re-annotating mutations in gene EPN1: skipping.
Problem with re-annotating mutations in gene EPN2: skipping.
4100/14661 Problem with re-annotating mutations in gene EPN3: skipping.
Problem with re-annotating mutations in gene EPRS: skipping.
Problem with re-annotating mutations in gene EPS15: skipping.
Problem with re-annotating mutations in gene EPS15L1: skipping.
Problem with re-annotating mutations in gene EPS8: skipping.
Problem with re-annotating mutations in gene EPS8L2: skipping.
Problem with re-annotating mutations in gene EPS8L3: skipping.
Problem with re-annotating mutations in gene EPX: skipping.
Problem with re-annotating mutations in gene EPYC: skipping.
Problem with re-annotating mutations in gene ERAP1: skipping.
Problem with re-annotating mutations in gene ERAP2: skipping.
Problem with re-annotating mutations in gene ERBB2: skipping.
Problem with re-annotating mutations in gene ERBB2IP: skipping.
Problem with re-annotating mutations in gene ERBB3: skipping.
Problem with re-annotating mutations in gene ERBB4: skipping.
Problem with re-annotating mutations in gene ERC1: skipping.
Problem with re-annotating mutations in gene ERC2: skipping.
Problem with re-annotating mutations in gene ERCC1: skipping.
Problem with re-annotating mutations in gene ERCC2: skipping.
Problem with re-annotating mutations in gene ERCC3: skipping.
Problem with re-annotating mutations in gene ERCC4: skipping.
Problem with re-annotating mutations in gene ERCC5: skipping.
Problem with re-annotating mutations in gene ERCC6: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ERCC6L: skipping.
Problem with re-annotating mutations in gene ERF: skipping.
Problem with re-annotating mutations in gene ERG: skipping.
Problem with re-annotating mutations in gene ERGIC3: skipping.
Problem with re-annotating mutations in gene ERI2: skipping.
Problem with re-annotating mutations in gene ERICH1: skipping.
Problem with re-annotating mutations in gene ERLEC1: skipping.
Problem with re-annotating mutations in gene ERMAP: skipping.
Problem with re-annotating mutations in gene ERMN: skipping.
Problem with re-annotating mutations in gene ERMP1: skipping.
Problem with re-annotating mutations in gene ERN2: skipping.
Problem with re-annotating mutations in gene ERO1L: skipping.
Problem with re-annotating mutations in gene ERO1LB: skipping.
Problem with re-annotating mutations in gene ERP27: skipping.
Problem with re-annotating mutations in gene ERP44: skipping.
Problem with re-annotating mutations in gene ERRFI1: skipping.
Problem with re-annotating mutations in gene ESAM: skipping.
Problem with re-annotating mutations in gene ESCO1: skipping.
Problem with re-annotating mutations in gene ESCO2: skipping.
Problem with re-annotating mutations in gene ESF1: skipping.
Problem with re-annotating mutations in gene ESM1: skipping.
Problem with re-annotating mutations in gene ESPL1: skipping.
Problem with re-annotating mutations in gene ESR1: skipping.
Problem with re-annotating mutations in gene ESR2: skipping.
Problem with re-annotating mutations in gene ESRP1: skipping.
Problem with re-annotating mutations in gene ESRP2: skipping.
Problem with re-annotating mutations in gene ESRRA: skipping.
Problem with re-annotating mutations in gene ESRRB: skipping.
Problem with re-annotating mutations in gene ESRRG: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ESX1: skipping.
Problem with re-annotating mutations in gene ESYT2: skipping.
Problem with re-annotating mutations in gene ESYT3: skipping.
Problem with re-annotating mutations in gene ETAA1: skipping.
Problem with re-annotating mutations in gene ETF1: skipping.
Problem with re-annotating mutations in gene ETFA: skipping.
Problem with re-annotating mutations in gene ETFDH: skipping.
Problem with re-annotating mutations in gene ETNK1: skipping.
Problem with re-annotating mutations in gene ETNK2: skipping.
Problem with re-annotating mutations in gene ETS2: skipping.
Problem with re-annotating mutations in gene ETV1: skipping.
Problem with re-annotating mutations in gene ETV3L: skipping.
Problem with re-annotating mutations in gene ETV4: skipping.
Problem with re-annotating mutations in gene ETV5: skipping.
Problem with re-annotating mutations in gene ETV6: skipping.
Problem with re-annotating mutations in gene EVC: skipping.
Problem with re-annotating mutations in gene EVC2: skipping.
Problem with re-annotating mutations in gene EVI2A: skipping.
Problem with re-annotating mutations in gene EVI2B: skipping.
Problem with re-annotating mutations in gene EVI5: skipping.
Problem with re-annotating mutations in gene EVL: skipping.
Problem with re-annotating mutations in gene EVPL: skipping.
Problem with re-annotating mutations in gene EXD1: skipping.
Problem with re-annotating mutations in gene EXO1: skipping.
Problem with re-annotating mutations in gene EXOC1: skipping.
Problem with re-annotating mutations in gene EXOC2: skipping.
Problem with re-annotating mutations in gene EXOC3L: skipping.
Problem with re-annotating mutations in gene EXOC3L2: skipping.
Problem with re-annotating mutations in gene EXOC4: skipping.
Problem with re-annotating mutations in gene EXOC5: skipping.
4200/14661 Problem with re-annotating mutations in gene EXOC6: skipping.
Problem with re-annotating mutations in gene EXOC6B: skipping.
Problem with re-annotating mutations in gene EXOC7: skipping.
Problem with re-annotating mutations in gene EXOC8: skipping.
Problem with re-annotating mutations in gene EXOG: skipping.
Problem with re-annotating mutations in gene EXOSC10: skipping.
Problem with re-annotating mutations in gene EXOSC2: skipping.
Problem with re-annotating mutations in gene EXOSC5: skipping.
Problem with re-annotating mutations in gene EXOSC9: skipping.
Problem with re-annotating mutations in gene EXPH5: skipping.
Problem with re-annotating mutations in gene EXT1: skipping.
Problem with re-annotating mutations in gene EXTL1: skipping.
Problem with re-annotating mutations in gene EXTL2: skipping.
Problem with re-annotating mutations in gene EXTL3: skipping.
Problem with re-annotating mutations in gene EYA1: skipping.
Problem with re-annotating mutations in gene EYA2: skipping.
Problem with re-annotating mutations in gene EYA4: skipping.
Problem with re-annotating mutations in gene EZH1: skipping.
Problem with re-annotating mutations in gene EZH2: skipping.
Problem with re-annotating mutations in gene EZR: skipping.
Problem with re-annotating mutations in gene F11: skipping.
Problem with re-annotating mutations in gene F12: skipping.
Problem with re-annotating mutations in gene F13A1: skipping.
Problem with re-annotating mutations in gene F13B: skipping.
Problem with re-annotating mutations in gene F2: skipping.
Problem with re-annotating mutations in gene F2RL2: skipping.
Problem with re-annotating mutations in gene F3: skipping.
Problem with re-annotating mutations in gene F5: skipping.
Problem with re-annotating mutations in gene F7: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene F8: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene F9: skipping.
Problem with re-annotating mutations in gene FA2H: skipping.
Problem with re-annotating mutations in gene FAAH: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FAAH2: skipping.
Problem with re-annotating mutations in gene FABP2: skipping.
Problem with re-annotating mutations in gene FADS2: skipping.
Problem with re-annotating mutations in gene FADS3: skipping.
Problem with re-annotating mutations in gene FAF1: skipping.
Problem with re-annotating mutations in gene FAF2: skipping.
Problem with re-annotating mutations in gene FAH: skipping.
Problem with re-annotating mutations in gene FAIM2: skipping.
Problem with re-annotating mutations in gene FAIM3: skipping.
Problem with re-annotating mutations in gene FAM102A: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FAM104B: skipping.
Problem with re-annotating mutations in gene FAM105A: skipping.
Problem with re-annotating mutations in gene FAM105B: skipping.
Problem with re-annotating mutations in gene FAM107A: skipping.
Problem with re-annotating mutations in gene FAM107B: skipping.
Problem with re-annotating mutations in gene FAM108B1: skipping.
Problem with re-annotating mutations in gene FAM108C1: skipping.
Problem with re-annotating mutations in gene FAM109B: skipping.
Problem with re-annotating mutations in gene FAM110B: skipping.
Problem with re-annotating mutations in gene FAM111A: skipping.
Problem with re-annotating mutations in gene FAM111B: skipping.
Problem with re-annotating mutations in gene FAM113B: skipping.
Problem with re-annotating mutations in gene FAM114A1: skipping.
Problem with re-annotating mutations in gene FAM115C: skipping.
Problem with re-annotating mutations in gene FAM116A: skipping.
Problem with re-annotating mutations in gene FAM117A: skipping.
Problem with re-annotating mutations in gene FAM117B: skipping.
Problem with re-annotating mutations in gene FAM118B: skipping.
Problem with re-annotating mutations in gene FAM119A: skipping.
Problem with re-annotating mutations in gene FAM120A: skipping.
Problem with re-annotating mutations in gene FAM120B: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FAM120C: skipping.
Problem with re-annotating mutations in gene FAM123A: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FAM123B: skipping.
Problem with re-annotating mutations in gene FAM123C: skipping.
Problem with re-annotating mutations in gene FAM124A: skipping.
Problem with re-annotating mutations in gene FAM124B: skipping.
Problem with re-annotating mutations in gene FAM125B: skipping.
Problem with re-annotating mutations in gene FAM126A: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FAM127B: skipping.
Problem with re-annotating mutations in gene FAM129A: skipping.
Problem with re-annotating mutations in gene FAM129B: skipping.
Problem with re-annotating mutations in gene FAM129C: skipping.
4300/14661 convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FAM133A: skipping.
Problem with re-annotating mutations in gene FAM134A: skipping.
Problem with re-annotating mutations in gene FAM134B: skipping.
Problem with re-annotating mutations in gene FAM134C: skipping.
Problem with re-annotating mutations in gene FAM135A: skipping.
Problem with re-annotating mutations in gene FAM135B: skipping.
Problem with re-annotating mutations in gene FAM13A: skipping.
Problem with re-annotating mutations in gene FAM13B: skipping.
Problem with re-annotating mutations in gene FAM13C: skipping.
Problem with re-annotating mutations in gene FAM149A: skipping.
Problem with re-annotating mutations in gene FAM151B: skipping.
Problem with re-annotating mutations in gene FAM154A: skipping.
Problem with re-annotating mutations in gene FAM154B: skipping.
Problem with re-annotating mutations in gene FAM155A: skipping.
Problem with re-annotating mutations in gene FAM160A2: skipping.
Problem with re-annotating mutations in gene FAM160B1: skipping.
Problem with re-annotating mutations in gene FAM161A: skipping.
Problem with re-annotating mutations in gene FAM163A: skipping.
Problem with re-annotating mutations in gene FAM164A: skipping.
Problem with re-annotating mutations in gene FAM164C: skipping.
Problem with re-annotating mutations in gene FAM167A: skipping.
Problem with re-annotating mutations in gene FAM169A: skipping.
Problem with re-annotating mutations in gene FAM169B: skipping.
Problem with re-annotating mutations in gene FAM170A: skipping.
Problem with re-annotating mutations in gene FAM171A1: skipping.
Problem with re-annotating mutations in gene FAM171B: skipping.
Problem with re-annotating mutations in gene FAM172A: skipping.
Problem with re-annotating mutations in gene FAM173B: skipping.
Problem with re-annotating mutations in gene FAM175A: skipping.
Problem with re-annotating mutations in gene FAM175B: skipping.
Problem with re-annotating mutations in gene FAM176A: skipping.
Problem with re-annotating mutations in gene FAM178A: skipping.
Problem with re-annotating mutations in gene FAM179A: skipping.
Problem with re-annotating mutations in gene FAM179B: skipping.
Problem with re-annotating mutations in gene FAM180A: skipping.
Problem with re-annotating mutations in gene FAM181A: skipping.
Problem with re-annotating mutations in gene FAM183A: skipping.
Problem with re-annotating mutations in gene FAM184A: skipping.
Problem with re-annotating mutations in gene FAM186B: skipping.
Problem with re-annotating mutations in gene FAM188A: skipping.
Problem with re-annotating mutations in gene FAM188B: skipping.
Problem with re-annotating mutations in gene FAM189A2: skipping.
Problem with re-annotating mutations in gene FAM189B: skipping.
Problem with re-annotating mutations in gene FAM190A: skipping.
Problem with re-annotating mutations in gene FAM190B: skipping.
Problem with re-annotating mutations in gene FAM192A: skipping.
Problem with re-annotating mutations in gene FAM194A: skipping.
Problem with re-annotating mutations in gene FAM196A: skipping.
Problem with re-annotating mutations in gene FAM198B: skipping.
Problem with re-annotating mutations in gene FAM19A2: skipping.
Problem with re-annotating mutations in gene FAM20A: skipping.
Problem with re-annotating mutations in gene FAM20B: skipping.
Problem with re-annotating mutations in gene FAM21B: skipping.
Problem with re-annotating mutations in gene FAM21C: skipping.
Problem with re-annotating mutations in gene FAM22F: skipping.
Problem with re-annotating mutations in gene FAM24A: skipping.
Problem with re-annotating mutations in gene FAM26F: skipping.
Problem with re-annotating mutations in gene FAM35A: skipping.
Problem with re-annotating mutations in gene FAM40A: skipping.
Problem with re-annotating mutations in gene FAM40B: skipping.
Problem with re-annotating mutations in gene FAM45A: skipping.
Problem with re-annotating mutations in gene FAM46B: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FAM46D: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FAM47A: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FAM47B: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FAM47C: skipping.
Problem with re-annotating mutations in gene FAM48A: skipping.
Problem with re-annotating mutations in gene FAM49A: skipping.
Problem with re-annotating mutations in gene FAM49B: skipping.
Problem with re-annotating mutations in gene FAM50B: skipping.
Problem with re-annotating mutations in gene FAM53C: skipping.
Problem with re-annotating mutations in gene FAM54A: skipping.
Problem with re-annotating mutations in gene FAM54B: skipping.
Problem with re-annotating mutations in gene FAM55C: skipping.
Problem with re-annotating mutations in gene FAM55D: skipping.
4400/14661 Problem with re-annotating mutations in gene FAM57B: skipping.
Problem with re-annotating mutations in gene FAM59A: skipping.
Problem with re-annotating mutations in gene FAM5B: skipping.
Problem with re-annotating mutations in gene FAM5C: skipping.
Problem with re-annotating mutations in gene FAM63A: skipping.
Problem with re-annotating mutations in gene FAM64A: skipping.
Problem with re-annotating mutations in gene FAM65A: skipping.
Problem with re-annotating mutations in gene FAM65B: skipping.
Problem with re-annotating mutations in gene FAM69B: skipping.
Problem with re-annotating mutations in gene FAM69C: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FAM70A: skipping.
Problem with re-annotating mutations in gene FAM70B: skipping.
Problem with re-annotating mutations in gene FAM71A: skipping.
Problem with re-annotating mutations in gene FAM71B: skipping.
Problem with re-annotating mutations in gene FAM71C: skipping.
Problem with re-annotating mutations in gene FAM71F1: skipping.
Problem with re-annotating mutations in gene FAM71F2: skipping.
Problem with re-annotating mutations in gene FAM73A: skipping.
Problem with re-annotating mutations in gene FAM81B: skipping.
Problem with re-annotating mutations in gene FAM82A1: skipping.
Problem with re-annotating mutations in gene FAM82A2: skipping.
Problem with re-annotating mutations in gene FAM82B: skipping.
Problem with re-annotating mutations in gene FAM83A: skipping.
Problem with re-annotating mutations in gene FAM83B: skipping.
Problem with re-annotating mutations in gene FAM83C: skipping.
Problem with re-annotating mutations in gene FAM83D: skipping.
Problem with re-annotating mutations in gene FAM83G: skipping.
Problem with re-annotating mutations in gene FAM84A: skipping.
Problem with re-annotating mutations in gene FAM86A: skipping.
Problem with re-annotating mutations in gene FAM8A1: skipping.
Problem with re-annotating mutations in gene FAM90A1: skipping.
Problem with re-annotating mutations in gene FAM91A1: skipping.
Problem with re-annotating mutations in gene FAM92B: skipping.
Problem with re-annotating mutations in gene FAM98B: skipping.
Problem with re-annotating mutations in gene FAM98C: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FAM9B: skipping.
Problem with re-annotating mutations in gene FANCA: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FANCB: skipping.
Problem with re-annotating mutations in gene FANCC: skipping.
Problem with re-annotating mutations in gene FANCD2: skipping.
Problem with re-annotating mutations in gene FANCF: skipping.
Problem with re-annotating mutations in gene FANCG: skipping.
Problem with re-annotating mutations in gene FANCI: skipping.
Problem with re-annotating mutations in gene FANCM: skipping.
Problem with re-annotating mutations in gene FANK1: skipping.
Problem with re-annotating mutations in gene FAP: skipping.
Problem with re-annotating mutations in gene FAR2: skipping.
Problem with re-annotating mutations in gene FARP1: skipping.
Problem with re-annotating mutations in gene FARP2: skipping.
Problem with re-annotating mutations in gene FARS2: skipping.
Problem with re-annotating mutations in gene FARSB: skipping.
Problem with re-annotating mutations in gene FAS: skipping.
Problem with re-annotating mutations in gene FASTKD1: skipping.
Problem with re-annotating mutations in gene FASTKD2: skipping.
Problem with re-annotating mutations in gene FASTKD3: skipping.
Problem with re-annotating mutations in gene FASTKD5: skipping.
Problem with re-annotating mutations in gene FAT1: skipping.
Problem with re-annotating mutations in gene FAT2: skipping.
Problem with re-annotating mutations in gene FAT3: skipping.
Problem with re-annotating mutations in gene FAT4: skipping.
Problem with re-annotating mutations in gene FBF1: skipping.
Problem with re-annotating mutations in gene FBL: skipping.
Problem with re-annotating mutations in gene FBLN1: skipping.
Problem with re-annotating mutations in gene FBLN2: skipping.
Problem with re-annotating mutations in gene FBLN7: skipping.
Problem with re-annotating mutations in gene FBN1: skipping.
Problem with re-annotating mutations in gene FBN2: skipping.
Problem with re-annotating mutations in gene FBN3: skipping.
Problem with re-annotating mutations in gene FBP2: skipping.
Problem with re-annotating mutations in gene FBXL12: skipping.
Problem with re-annotating mutations in gene FBXL13: skipping.
Problem with re-annotating mutations in gene FBXL14: skipping.
4500/14661 Problem with re-annotating mutations in gene FBXL17: skipping.
Problem with re-annotating mutations in gene FBXL18: skipping.
Problem with re-annotating mutations in gene FBXL19: skipping.
Problem with re-annotating mutations in gene FBXL2: skipping.
Problem with re-annotating mutations in gene FBXL20: skipping.
Problem with re-annotating mutations in gene FBXL21: skipping.
Problem with re-annotating mutations in gene FBXL3: skipping.
Problem with re-annotating mutations in gene FBXL4: skipping.
Problem with re-annotating mutations in gene FBXL5: skipping.
Problem with re-annotating mutations in gene FBXL7: skipping.
Problem with re-annotating mutations in gene FBXO10: skipping.
Problem with re-annotating mutations in gene FBXO11: skipping.
Problem with re-annotating mutations in gene FBXO15: skipping.
Problem with re-annotating mutations in gene FBXO16: skipping.
Problem with re-annotating mutations in gene FBXO18: skipping.
Problem with re-annotating mutations in gene FBXO21: skipping.
Problem with re-annotating mutations in gene FBXO22: skipping.
Problem with re-annotating mutations in gene FBXO24: skipping.
Problem with re-annotating mutations in gene FBXO27: skipping.
Problem with re-annotating mutations in gene FBXO3: skipping.
Problem with re-annotating mutations in gene FBXO30: skipping.
Problem with re-annotating mutations in gene FBXO31: skipping.
Problem with re-annotating mutations in gene FBXO32: skipping.
Problem with re-annotating mutations in gene FBXO34: skipping.
Problem with re-annotating mutations in gene FBXO38: skipping.
Problem with re-annotating mutations in gene FBXO39: skipping.
Problem with re-annotating mutations in gene FBXO4: skipping.
Problem with re-annotating mutations in gene FBXO40: skipping.
Problem with re-annotating mutations in gene FBXO42: skipping.
Problem with re-annotating mutations in gene FBXO43: skipping.
Problem with re-annotating mutations in gene FBXO45: skipping.
Problem with re-annotating mutations in gene FBXO47: skipping.
Problem with re-annotating mutations in gene FBXO5: skipping.
Problem with re-annotating mutations in gene FBXO7: skipping.
Problem with re-annotating mutations in gene FBXO9: skipping.
Problem with re-annotating mutations in gene FBXW10: skipping.
Problem with re-annotating mutations in gene FBXW11: skipping.
Problem with re-annotating mutations in gene FBXW12: skipping.
Problem with re-annotating mutations in gene FBXW2: skipping.
Problem with re-annotating mutations in gene FBXW4: skipping.
Problem with re-annotating mutations in gene FBXW7: skipping.
Problem with re-annotating mutations in gene FBXW8: skipping.
Problem with re-annotating mutations in gene FCAR: skipping.
Problem with re-annotating mutations in gene FCER1A: skipping.
Problem with re-annotating mutations in gene FCGBP: skipping.
Problem with re-annotating mutations in gene FCHO1: skipping.
Problem with re-annotating mutations in gene FCHO2: skipping.
Problem with re-annotating mutations in gene FCHSD1: skipping.
Problem with re-annotating mutations in gene FCHSD2: skipping.
Problem with re-annotating mutations in gene FCN1: skipping.
Problem with re-annotating mutations in gene FCN2: skipping.
Problem with re-annotating mutations in gene FCRL1: skipping.
Problem with re-annotating mutations in gene FCRL2: skipping.
Problem with re-annotating mutations in gene FCRL3: skipping.
Problem with re-annotating mutations in gene FCRL4: skipping.
Problem with re-annotating mutations in gene FCRL5: skipping.
Problem with re-annotating mutations in gene FCRLA: skipping.
Problem with re-annotating mutations in gene FCRLB: skipping.
Problem with re-annotating mutations in gene FDFT1: skipping.
Problem with re-annotating mutations in gene FDXACB1: skipping.
Problem with re-annotating mutations in gene FECH: skipping.
Problem with re-annotating mutations in gene FEN1: skipping.
Problem with re-annotating mutations in gene FER: skipping.
Problem with re-annotating mutations in gene FER1L5: skipping.
Problem with re-annotating mutations in gene FER1L6: skipping.
Problem with re-annotating mutations in gene FERD3L: skipping.
Problem with re-annotating mutations in gene FERMT1: skipping.
Problem with re-annotating mutations in gene FERMT2: skipping.
Problem with re-annotating mutations in gene FERMT3: skipping.
Problem with re-annotating mutations in gene FETUB: skipping.
Problem with re-annotating mutations in gene FEZ1: skipping.
Problem with re-annotating mutations in gene FEZ2: skipping.
Problem with re-annotating mutations in gene FEZF1: skipping.
Problem with re-annotating mutations in gene FEZF2: skipping.
Problem with re-annotating mutations in gene FFAR2: skipping.
Problem with re-annotating mutations in gene FGA: skipping.
Problem with re-annotating mutations in gene FGB: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FGD1: skipping.
Problem with re-annotating mutations in gene FGD2: skipping.
Problem with re-annotating mutations in gene FGD3: skipping.
Problem with re-annotating mutations in gene FGD4: skipping.
Problem with re-annotating mutations in gene FGD5: skipping.
4600/14661 Problem with re-annotating mutations in gene FGD6: skipping.
Problem with re-annotating mutations in gene FGF1: skipping.
Problem with re-annotating mutations in gene FGF11: skipping.
Problem with re-annotating mutations in gene FGF12: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FGF13: skipping.
Problem with re-annotating mutations in gene FGF14: skipping.
Problem with re-annotating mutations in gene FGF20: skipping.
Problem with re-annotating mutations in gene FGF5: skipping.
Problem with re-annotating mutations in gene FGF6: skipping.
Problem with re-annotating mutations in gene FGFBP1: skipping.
Problem with re-annotating mutations in gene FGFR1: skipping.
Problem with re-annotating mutations in gene FGFR1OP: skipping.
Problem with re-annotating mutations in gene FGFR1OP2: skipping.
Problem with re-annotating mutations in gene FGFR2: skipping.
Problem with re-annotating mutations in gene FGFR3: skipping.
Problem with re-annotating mutations in gene FGFR4: skipping.
Problem with re-annotating mutations in gene FGG: skipping.
Problem with re-annotating mutations in gene FGL1: skipping.
Problem with re-annotating mutations in gene FGR: skipping.
Problem with re-annotating mutations in gene FHDC1: skipping.
Problem with re-annotating mutations in gene FHL2: skipping.
Problem with re-annotating mutations in gene FHL3: skipping.
Problem with re-annotating mutations in gene FHL5: skipping.
Problem with re-annotating mutations in gene FHOD1: skipping.
Problem with re-annotating mutations in gene FHOD3: skipping.
Problem with re-annotating mutations in gene FIG4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FIGF: skipping.
Problem with re-annotating mutations in gene FIGN: skipping.
Problem with re-annotating mutations in gene FIGNL1: skipping.
Problem with re-annotating mutations in gene FILIP1: skipping.
Problem with re-annotating mutations in gene FILIP1L: skipping.
Problem with re-annotating mutations in gene FIP1L1: skipping.
Problem with re-annotating mutations in gene FIZ1: skipping.
Problem with re-annotating mutations in gene FKBP11: skipping.
Problem with re-annotating mutations in gene FKBP14: skipping.
Problem with re-annotating mutations in gene FKBP15: skipping.
Problem with re-annotating mutations in gene FKBP3: skipping.
Problem with re-annotating mutations in gene FKBP5: skipping.
Problem with re-annotating mutations in gene FKBP8: skipping.
Problem with re-annotating mutations in gene FKBP9: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene FKBPL: skipping.
Problem with re-annotating mutations in gene FKSG83: skipping.
Problem with re-annotating mutations in gene FKTN: skipping.
Problem with re-annotating mutations in gene FLG: skipping.
Problem with re-annotating mutations in gene FLG2: skipping.
Problem with re-annotating mutations in gene FLII: skipping.
Problem with re-annotating mutations in gene FLJ43860: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FLJ44635: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FLNA: skipping.
Problem with re-annotating mutations in gene FLNB: skipping.
Problem with re-annotating mutations in gene FLNC: skipping.
Problem with re-annotating mutations in gene FLOT1: skipping.
Problem with re-annotating mutations in gene FLRT1: skipping.
Problem with re-annotating mutations in gene FLRT2: skipping.
Problem with re-annotating mutations in gene FLRT3: skipping.
Problem with re-annotating mutations in gene FLT1: skipping.
Problem with re-annotating mutations in gene FLT3: skipping.
Problem with re-annotating mutations in gene FLT4: skipping.
Problem with re-annotating mutations in gene FLVCR1: skipping.
Problem with re-annotating mutations in gene FLVCR2: skipping.
Problem with re-annotating mutations in gene FMN1: skipping.
Problem with re-annotating mutations in gene FMN2: skipping.
Problem with re-annotating mutations in gene FMNL1: skipping.
Problem with re-annotating mutations in gene FMNL2: skipping.
Problem with re-annotating mutations in gene FMNL3: skipping.
Problem with re-annotating mutations in gene FMO1: skipping.
Problem with re-annotating mutations in gene FMO2: skipping.
Problem with re-annotating mutations in gene FMO3: skipping.
Problem with re-annotating mutations in gene FMO4: skipping.
Problem with re-annotating mutations in gene FMO5: skipping.
Problem with re-annotating mutations in gene FMOD: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FMR1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FMR1NB: skipping.
Problem with re-annotating mutations in gene FN1: skipping.
Problem with re-annotating mutations in gene FN3KRP: skipping.
Problem with re-annotating mutations in gene FNBP1: skipping.
4700/14661 Problem with re-annotating mutations in gene FNBP4: skipping.
Problem with re-annotating mutations in gene FNDC1: skipping.
Problem with re-annotating mutations in gene FNDC3A: skipping.
Problem with re-annotating mutations in gene FNDC3B: skipping.
Problem with re-annotating mutations in gene FNIP1: skipping.
Problem with re-annotating mutations in gene FNIP2: skipping.
Problem with re-annotating mutations in gene FOLH1: skipping.
Problem with re-annotating mutations in gene FOLH1B: skipping.
Problem with re-annotating mutations in gene FOLR1: skipping.
Problem with re-annotating mutations in gene FOLR3: skipping.
Problem with re-annotating mutations in gene FOSB: skipping.
Problem with re-annotating mutations in gene FOSL2: skipping.
Problem with re-annotating mutations in gene FOXD4: skipping.
Problem with re-annotating mutations in gene FOXD4L1: skipping.
Problem with re-annotating mutations in gene FOXF2: skipping.
Problem with re-annotating mutations in gene FOXG1: skipping.
Problem with re-annotating mutations in gene FOXI1: skipping.
Problem with re-annotating mutations in gene FOXJ2: skipping.
Problem with re-annotating mutations in gene FOXJ3: skipping.
Problem with re-annotating mutations in gene FOXK1: skipping.
Problem with re-annotating mutations in gene FOXK2: skipping.
Problem with re-annotating mutations in gene FOXL1: skipping.
Problem with re-annotating mutations in gene FOXM1: skipping.
Problem with re-annotating mutations in gene FOXN1: skipping.
Problem with re-annotating mutations in gene FOXN2: skipping.
Problem with re-annotating mutations in gene FOXN3: skipping.
Problem with re-annotating mutations in gene FOXN4: skipping.
Problem with re-annotating mutations in gene FOXO3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FOXO4: skipping.
Problem with re-annotating mutations in gene FOXP1: skipping.
Problem with re-annotating mutations in gene FOXP2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FOXP3: skipping.
Problem with re-annotating mutations in gene FOXP4: skipping.
Problem with re-annotating mutations in gene FOXR1: skipping.
Problem with re-annotating mutations in gene FOXRED2: skipping.
Problem with re-annotating mutations in gene FPGT: skipping.
Problem with re-annotating mutations in gene FPR1: skipping.
Problem with re-annotating mutations in gene FPR2: skipping.
Problem with re-annotating mutations in gene FPR3: skipping.
Problem with re-annotating mutations in gene FRAS1: skipping.
Problem with re-annotating mutations in gene FREM1: skipping.
Problem with re-annotating mutations in gene FREM2: skipping.
Problem with re-annotating mutations in gene FRK: skipping.
Problem with re-annotating mutations in gene FRMD1: skipping.
Problem with re-annotating mutations in gene FRMD3: skipping.
Problem with re-annotating mutations in gene FRMD4A: skipping.
Problem with re-annotating mutations in gene FRMD4B: skipping.
Problem with re-annotating mutations in gene FRMD6: skipping.
Problem with re-annotating mutations in gene FRMPD1: skipping.
Problem with re-annotating mutations in gene FRMPD2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FRMPD4: skipping.
Problem with re-annotating mutations in gene FRRS1: skipping.
Problem with re-annotating mutations in gene FRS2: skipping.
Problem with re-annotating mutations in gene FRS3: skipping.
Problem with re-annotating mutations in gene FRY: skipping.
Problem with re-annotating mutations in gene FRYL: skipping.
Problem with re-annotating mutations in gene FRZB: skipping.
Problem with re-annotating mutations in gene FSCB: skipping.
Problem with re-annotating mutations in gene FSCN3: skipping.
Problem with re-annotating mutations in gene FSD1: skipping.
Problem with re-annotating mutations in gene FSD2: skipping.
Problem with re-annotating mutations in gene FSHB: skipping.
Problem with re-annotating mutations in gene FSHR: skipping.
Problem with re-annotating mutations in gene FSIP1: skipping.
Problem with re-annotating mutations in gene FST: skipping.
Problem with re-annotating mutations in gene FSTL1: skipping.
Problem with re-annotating mutations in gene FSTL4: skipping.
Problem with re-annotating mutations in gene FSTL5: skipping.
Problem with re-annotating mutations in gene FTCD: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FTHL17: skipping.
Problem with re-annotating mutations in gene FTMT: skipping.
Problem with re-annotating mutations in gene FTO: skipping.
Problem with re-annotating mutations in gene FTSJ3: skipping.
Problem with re-annotating mutations in gene FTSJD1: skipping.
Problem with re-annotating mutations in gene FTSJD2: skipping.
Problem with re-annotating mutations in gene FUBP1: skipping.
Problem with re-annotating mutations in gene FUCA1: skipping.
4800/14661 convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene FUNDC1: skipping.
Problem with re-annotating mutations in gene FURIN: skipping.
Problem with re-annotating mutations in gene FUT1: skipping.
Problem with re-annotating mutations in gene FUT10: skipping.
Problem with re-annotating mutations in gene FUT3: skipping.
Problem with re-annotating mutations in gene FUT8: skipping.
Problem with re-annotating mutations in gene FUT9: skipping.
Problem with re-annotating mutations in gene FXR1: skipping.
Problem with re-annotating mutations in gene FXR2: skipping.
Problem with re-annotating mutations in gene FXYD5: skipping.
Problem with re-annotating mutations in gene FXYD6: skipping.
Problem with re-annotating mutations in gene FYB: skipping.
Problem with re-annotating mutations in gene FYCO1: skipping.
Problem with re-annotating mutations in gene FYN: skipping.
Problem with re-annotating mutations in gene FYTTD1: skipping.
Problem with re-annotating mutations in gene FZD10: skipping.
Problem with re-annotating mutations in gene FZD2: skipping.
Problem with re-annotating mutations in gene FZD3: skipping.
Problem with re-annotating mutations in gene FZD4: skipping.
Problem with re-annotating mutations in gene FZD6: skipping.
Problem with re-annotating mutations in gene FZD7: skipping.
Problem with re-annotating mutations in gene G2E3: skipping.
Problem with re-annotating mutations in gene G3BP1: skipping.
Problem with re-annotating mutations in gene G3BP2: skipping.
Problem with re-annotating mutations in gene G6PC: skipping.
Problem with re-annotating mutations in gene G6PC3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene G6PD: skipping.
Problem with re-annotating mutations in gene GAB1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GAB3: skipping.
Problem with re-annotating mutations in gene GAB4: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene GABBR1: skipping.
Problem with re-annotating mutations in gene GABBR2: skipping.
Problem with re-annotating mutations in gene GABPA: skipping.
Problem with re-annotating mutations in gene GABPB1: skipping.
Problem with re-annotating mutations in gene GABPB2: skipping.
Problem with re-annotating mutations in gene GABRA1: skipping.
Problem with re-annotating mutations in gene GABRA2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GABRA3: skipping.
Problem with re-annotating mutations in gene GABRA4: skipping.
Problem with re-annotating mutations in gene GABRA5: skipping.
Problem with re-annotating mutations in gene GABRA6: skipping.
Problem with re-annotating mutations in gene GABRB1: skipping.
Problem with re-annotating mutations in gene GABRB2: skipping.
Problem with re-annotating mutations in gene GABRB3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GABRE: skipping.
Problem with re-annotating mutations in gene GABRG1: skipping.
Problem with re-annotating mutations in gene GABRG2: skipping.
Problem with re-annotating mutations in gene GABRG3: skipping.
Problem with re-annotating mutations in gene GABRP: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GABRQ: skipping.
Problem with re-annotating mutations in gene GABRR1: skipping.
Problem with re-annotating mutations in gene GABRR2: skipping.
Problem with re-annotating mutations in gene GABRR3: skipping.
Problem with re-annotating mutations in gene GAD1: skipping.
Problem with re-annotating mutations in gene GAD2: skipping.
Problem with re-annotating mutations in gene GAK: skipping.
Problem with re-annotating mutations in gene GAL3ST1: skipping.
Problem with re-annotating mutations in gene GAL3ST4: skipping.
Problem with re-annotating mutations in gene GALK2: skipping.
Problem with re-annotating mutations in gene GALM: skipping.
Problem with re-annotating mutations in gene GALNS: skipping.
Problem with re-annotating mutations in gene GALNT1: skipping.
Problem with re-annotating mutations in gene GALNT10: skipping.
Problem with re-annotating mutations in gene GALNT11: skipping.
Problem with re-annotating mutations in gene GALNT12: skipping.
Problem with re-annotating mutations in gene GALNT13: skipping.
Problem with re-annotating mutations in gene GALNT14: skipping.
Problem with re-annotating mutations in gene GALNT2: skipping.
Problem with re-annotating mutations in gene GALNT3: skipping.
Problem with re-annotating mutations in gene GALNT5: skipping.
Problem with re-annotating mutations in gene GALNT6: skipping.
Problem with re-annotating mutations in gene GALNT7: skipping.
Problem with re-annotating mutations in gene GALNT8: skipping.
Problem with re-annotating mutations in gene GALNT9: skipping.
Problem with re-annotating mutations in gene GALNTL1: skipping.
Problem with re-annotating mutations in gene GALNTL2: skipping.
Problem with re-annotating mutations in gene GALNTL4: skipping.
Problem with re-annotating mutations in gene GALNTL5: skipping.
Problem with re-annotating mutations in gene GALNTL6: skipping.
Problem with re-annotating mutations in gene GALR1: skipping.
Problem with re-annotating mutations in gene GALT: skipping.
Problem with re-annotating mutations in gene GAN: skipping.
Problem with re-annotating mutations in gene GANAB: skipping.
Problem with re-annotating mutations in gene GANC: skipping.
4900/14661 Problem with re-annotating mutations in gene GAP43: skipping.
Problem with re-annotating mutations in gene GAPVD1: skipping.
Problem with re-annotating mutations in gene GARNL3: skipping.
Problem with re-annotating mutations in gene GARS: skipping.
Problem with re-annotating mutations in gene GART: skipping.
Problem with re-annotating mutations in gene GAS2: skipping.
Problem with re-annotating mutations in gene GAS2L2: skipping.
Problem with re-annotating mutations in gene GAS2L3: skipping.
Problem with re-annotating mutations in gene GAS7: skipping.
Problem with re-annotating mutations in gene GAS8: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GATA1: skipping.
Problem with re-annotating mutations in gene GATA2: skipping.
Problem with re-annotating mutations in gene GATA3: skipping.
Problem with re-annotating mutations in gene GATA6: skipping.
Problem with re-annotating mutations in gene GATAD2A: skipping.
Problem with re-annotating mutations in gene GATAD2B: skipping.
Problem with re-annotating mutations in gene GATS: skipping.
Problem with re-annotating mutations in gene GBA2: skipping.
Problem with re-annotating mutations in gene GBA3: skipping.
Problem with re-annotating mutations in gene GBE1: skipping.
Problem with re-annotating mutations in gene GBF1: skipping.
Problem with re-annotating mutations in gene GBP1: skipping.
Problem with re-annotating mutations in gene GBP2: skipping.
Problem with re-annotating mutations in gene GBP3: skipping.
Problem with re-annotating mutations in gene GBP4: skipping.
Problem with re-annotating mutations in gene GBP5: skipping.
Problem with re-annotating mutations in gene GBP6: skipping.
Problem with re-annotating mutations in gene GBP7: skipping.
Problem with re-annotating mutations in gene GC: skipping.
Problem with re-annotating mutations in gene GCC1: skipping.
Problem with re-annotating mutations in gene GCC2: skipping.
Problem with re-annotating mutations in gene GCDH: skipping.
Problem with re-annotating mutations in gene GCG: skipping.
Problem with re-annotating mutations in gene GCK: skipping.
Problem with re-annotating mutations in gene GCKR: skipping.
Problem with re-annotating mutations in gene GCLC: skipping.
Problem with re-annotating mutations in gene GCM2: skipping.
Problem with re-annotating mutations in gene GCN1L1: skipping.
Problem with re-annotating mutations in gene GCNT1: skipping.
Problem with re-annotating mutations in gene GCNT2: skipping.
Problem with re-annotating mutations in gene GCNT3: skipping.
Problem with re-annotating mutations in gene GCNT4: skipping.
Problem with re-annotating mutations in gene GCOM1: skipping.
Problem with re-annotating mutations in gene GDAP1L1: skipping.
Problem with re-annotating mutations in gene GDAP2: skipping.
Problem with re-annotating mutations in gene GDF10: skipping.
Problem with re-annotating mutations in gene GDF11: skipping.
Problem with re-annotating mutations in gene GDF3: skipping.
Problem with re-annotating mutations in gene GDF5: skipping.
Problem with re-annotating mutations in gene GDF6: skipping.
Problem with re-annotating mutations in gene GDF9: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GDPD2: skipping.
Problem with re-annotating mutations in gene GDPD3: skipping.
Problem with re-annotating mutations in gene GDPD4: skipping.
Problem with re-annotating mutations in gene GDPD5: skipping.
Problem with re-annotating mutations in gene GEFT: skipping.
Problem with re-annotating mutations in gene GEM: skipping.
Problem with re-annotating mutations in gene GEMIN4: skipping.
Problem with re-annotating mutations in gene GEMIN5: skipping.
Problem with re-annotating mutations in gene GEMIN6: skipping.
Problem with re-annotating mutations in gene GEN1: skipping.
Problem with re-annotating mutations in gene GFI1: skipping.
Problem with re-annotating mutations in gene GFI1B: skipping.
Problem with re-annotating mutations in gene GFM1: skipping.
Problem with re-annotating mutations in gene GFM2: skipping.
Problem with re-annotating mutations in gene GFOD1: skipping.
Problem with re-annotating mutations in gene GFOD2: skipping.
Problem with re-annotating mutations in gene GFPT1: skipping.
Problem with re-annotating mutations in gene GFPT2: skipping.
Problem with re-annotating mutations in gene GFRA1: skipping.
Problem with re-annotating mutations in gene GGA2: skipping.
Problem with re-annotating mutations in gene GGA3: skipping.
Problem with re-annotating mutations in gene GGCT: skipping.
5000/14661 Problem with re-annotating mutations in gene GGCX: skipping.
Problem with re-annotating mutations in gene GGN: skipping.
Problem with re-annotating mutations in gene GGNBP2: skipping.
Problem with re-annotating mutations in gene GGT1: skipping.
Problem with re-annotating mutations in gene GGT5: skipping.
Problem with re-annotating mutations in gene GGT7: skipping.
Problem with re-annotating mutations in gene GH1: skipping.
Problem with re-annotating mutations in gene GH2: skipping.
Problem with re-annotating mutations in gene GHITM: skipping.
Problem with re-annotating mutations in gene GHR: skipping.
Problem with re-annotating mutations in gene GHRHR: skipping.
Problem with re-annotating mutations in gene GHSR: skipping.
Problem with re-annotating mutations in gene GIF: skipping.
Problem with re-annotating mutations in gene GIGYF1: skipping.
Problem with re-annotating mutations in gene GIGYF2: skipping.
Problem with re-annotating mutations in gene GIMAP1: skipping.
Problem with re-annotating mutations in gene GIMAP4: skipping.
Problem with re-annotating mutations in gene GIMAP5: skipping.
Problem with re-annotating mutations in gene GIMAP6: skipping.
Problem with re-annotating mutations in gene GIMAP7: skipping.
Problem with re-annotating mutations in gene GIMAP8: skipping.
Problem with re-annotating mutations in gene GIN1: skipping.
Problem with re-annotating mutations in gene GINS2: skipping.
Problem with re-annotating mutations in gene GIPC2: skipping.
Problem with re-annotating mutations in gene GIT1: skipping.
Problem with re-annotating mutations in gene GIT2: skipping.
Problem with re-annotating mutations in gene GJA1: skipping.
Problem with re-annotating mutations in gene GJA10: skipping.
Problem with re-annotating mutations in gene GJA4: skipping.
Problem with re-annotating mutations in gene GJA5: skipping.
Problem with re-annotating mutations in gene GJA8: skipping.
Problem with re-annotating mutations in gene GJA9: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GJB1: skipping.
Problem with re-annotating mutations in gene GJB3: skipping.
Problem with re-annotating mutations in gene GJB7: skipping.
Problem with re-annotating mutations in gene GJC1: skipping.
Problem with re-annotating mutations in gene GJC3: skipping.
Problem with re-annotating mutations in gene GJD4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GK: skipping.
Problem with re-annotating mutations in gene GK2: skipping.
Problem with re-annotating mutations in gene GKAP1: skipping.
Problem with re-annotating mutations in gene GKN1: skipping.
Problem with re-annotating mutations in gene GKN2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GLA: skipping.
Problem with re-annotating mutations in gene GLB1: skipping.
Problem with re-annotating mutations in gene GLB1L: skipping.
Problem with re-annotating mutations in gene GLB1L2: skipping.
Problem with re-annotating mutations in gene GLB1L3: skipping.
Problem with re-annotating mutations in gene GLCCI1: skipping.
Problem with re-annotating mutations in gene GLCE: skipping.
Problem with re-annotating mutations in gene GLDC: skipping.
Problem with re-annotating mutations in gene GLDN: skipping.
Problem with re-annotating mutations in gene GLE1: skipping.
Problem with re-annotating mutations in gene GLG1: skipping.
Problem with re-annotating mutations in gene GLI1: skipping.
Problem with re-annotating mutations in gene GLI2: skipping.
Problem with re-annotating mutations in gene GLI3: skipping.
Problem with re-annotating mutations in gene GLIPR1L1: skipping.
Problem with re-annotating mutations in gene GLIPR1L2: skipping.
Problem with re-annotating mutations in gene GLIS1: skipping.
Problem with re-annotating mutations in gene GLIS3: skipping.
Problem with re-annotating mutations in gene GLP1R: skipping.
Problem with re-annotating mutations in gene GLP2R: skipping.
Problem with re-annotating mutations in gene GLRA1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GLRA2: skipping.
Problem with re-annotating mutations in gene GLRA3: skipping.
Problem with re-annotating mutations in gene GLRB: skipping.
Problem with re-annotating mutations in gene GLRX3: skipping.
Problem with re-annotating mutations in gene GLS2: skipping.
Problem with re-annotating mutations in gene GLT1D1: skipping.
Problem with re-annotating mutations in gene GLT25D1: skipping.
Problem with re-annotating mutations in gene GLT25D2: skipping.
Problem with re-annotating mutations in gene GLT6D1: skipping.
Problem with re-annotating mutations in gene GLT8D1: skipping.
Problem with re-annotating mutations in gene GLT8D2: skipping.
Problem with re-annotating mutations in gene GLTSCR1: skipping.
Problem with re-annotating mutations in gene GLTSCR2: skipping.
Problem with re-annotating mutations in gene GLUD1: skipping.
5100/14661 convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GLUD2: skipping.
Problem with re-annotating mutations in gene GLUL: skipping.
Problem with re-annotating mutations in gene GLYAT: skipping.
Problem with re-annotating mutations in gene GLYATL1: skipping.
Problem with re-annotating mutations in gene GLYATL2: skipping.
Problem with re-annotating mutations in gene GLYR1: skipping.
Problem with re-annotating mutations in gene GM2A: skipping.
Problem with re-annotating mutations in gene GMEB1: skipping.
Problem with re-annotating mutations in gene GMEB2: skipping.
Problem with re-annotating mutations in gene GMFB: skipping.
Problem with re-annotating mutations in gene GMFG: skipping.
Problem with re-annotating mutations in gene GML: skipping.
Problem with re-annotating mutations in gene GMPPA: skipping.
Problem with re-annotating mutations in gene GMPR: skipping.
Problem with re-annotating mutations in gene GMPR2: skipping.
Problem with re-annotating mutations in gene GMPS: skipping.
Problem with re-annotating mutations in gene GNA12: skipping.
Problem with re-annotating mutations in gene GNA13: skipping.
Problem with re-annotating mutations in gene GNA14: skipping.
Problem with re-annotating mutations in gene GNA15: skipping.
Problem with re-annotating mutations in gene GNAI1: skipping.
Problem with re-annotating mutations in gene GNAL: skipping.
Problem with re-annotating mutations in gene GNAO1: skipping.
Problem with re-annotating mutations in gene GNAQ: skipping.
Problem with re-annotating mutations in gene GNAS: skipping.
Problem with re-annotating mutations in gene GNAT1: skipping.
Problem with re-annotating mutations in gene GNAT2: skipping.
Problem with re-annotating mutations in gene GNAT3: skipping.
Problem with re-annotating mutations in gene GNB3: skipping.
Problem with re-annotating mutations in gene GNB4: skipping.
Problem with re-annotating mutations in gene GNE: skipping.
Problem with re-annotating mutations in gene GNG3: skipping.
Problem with re-annotating mutations in gene GNL2: skipping.
Problem with re-annotating mutations in gene GNL3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GNL3L: skipping.
Problem with re-annotating mutations in gene GNPAT: skipping.
Problem with re-annotating mutations in gene GNPTAB: skipping.
Problem with re-annotating mutations in gene GNRHR: skipping.
Problem with re-annotating mutations in gene GNS: skipping.
Problem with re-annotating mutations in gene GOLGA1: skipping.
Problem with re-annotating mutations in gene GOLGA2: skipping.
Problem with re-annotating mutations in gene GOLGA3: skipping.
Problem with re-annotating mutations in gene GOLGA4: skipping.
Problem with re-annotating mutations in gene GOLGA5: skipping.
Problem with re-annotating mutations in gene GOLGA7B: skipping.
Problem with re-annotating mutations in gene GOLGB1: skipping.
Problem with re-annotating mutations in gene GOLIM4: skipping.
Problem with re-annotating mutations in gene GOLM1: skipping.
Problem with re-annotating mutations in gene GOLPH3: skipping.
Problem with re-annotating mutations in gene GOLPH3L: skipping.
Problem with re-annotating mutations in gene GOLT1B: skipping.
Problem with re-annotating mutations in gene GON4L: skipping.
Problem with re-annotating mutations in gene GOPC: skipping.
Problem with re-annotating mutations in gene GORASP1: skipping.
Problem with re-annotating mutations in gene GOSR1: skipping.
Problem with re-annotating mutations in gene GOSR2: skipping.
Problem with re-annotating mutations in gene GOT1: skipping.
Problem with re-annotating mutations in gene GP2: skipping.
Problem with re-annotating mutations in gene GP5: skipping.
Problem with re-annotating mutations in gene GP6: skipping.
Problem with re-annotating mutations in gene GPAA1: skipping.
Problem with re-annotating mutations in gene GPAM: skipping.
Problem with re-annotating mutations in gene GPATCH1: skipping.
Problem with re-annotating mutations in gene GPATCH2: skipping.
Problem with re-annotating mutations in gene GPATCH3: skipping.
Problem with re-annotating mutations in gene GPATCH8: skipping.
Problem with re-annotating mutations in gene GPBAR1: skipping.
Problem with re-annotating mutations in gene GPBP1: skipping.
Problem with re-annotating mutations in gene GPBP1L1: skipping.
Problem with re-annotating mutations in gene GPC2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GPC3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GPC4: skipping.
Problem with re-annotating mutations in gene GPC5: skipping.
Problem with re-annotating mutations in gene GPC6: skipping.
5200/14661 Problem with re-annotating mutations in gene GPD1L: skipping.
Problem with re-annotating mutations in gene GPD2: skipping.
Problem with re-annotating mutations in gene GPER: skipping.
Problem with re-annotating mutations in gene GPHN: skipping.
Problem with re-annotating mutations in gene GPI: skipping.
Problem with re-annotating mutations in gene GPLD1: skipping.
Problem with re-annotating mutations in gene GPM6A: skipping.
Problem with re-annotating mutations in gene GPN3: skipping.
Problem with re-annotating mutations in gene GPNMB: skipping.
Problem with re-annotating mutations in gene GPR1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GPR101: skipping.
Problem with re-annotating mutations in gene GPR108: skipping.
Problem with re-annotating mutations in gene GPR109A: skipping.
Problem with re-annotating mutations in gene GPR110: skipping.
Problem with re-annotating mutations in gene GPR111: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GPR112: skipping.
Problem with re-annotating mutations in gene GPR113: skipping.
Problem with re-annotating mutations in gene GPR114: skipping.
Problem with re-annotating mutations in gene GPR115: skipping.
Problem with re-annotating mutations in gene GPR116: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GPR119: skipping.
Problem with re-annotating mutations in gene GPR12: skipping.
Problem with re-annotating mutations in gene GPR125: skipping.
Problem with re-annotating mutations in gene GPR126: skipping.
Problem with re-annotating mutations in gene GPR128: skipping.
Problem with re-annotating mutations in gene GPR133: skipping.
Problem with re-annotating mutations in gene GPR139: skipping.
Problem with re-annotating mutations in gene GPR141: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GPR143: skipping.
Problem with re-annotating mutations in gene GPR148: skipping.
Problem with re-annotating mutations in gene GPR149: skipping.
Problem with re-annotating mutations in gene GPR153: skipping.
Problem with re-annotating mutations in gene GPR155: skipping.
Problem with re-annotating mutations in gene GPR156: skipping.
Problem with re-annotating mutations in gene GPR158: skipping.
Problem with re-annotating mutations in gene GPR160: skipping.
Problem with re-annotating mutations in gene GPR161: skipping.
Problem with re-annotating mutations in gene GPR162: skipping.
Problem with re-annotating mutations in gene GPR171: skipping.
Problem with re-annotating mutations in gene GPR172B: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GPR173: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GPR174: skipping.
Problem with re-annotating mutations in gene GPR176: skipping.
Problem with re-annotating mutations in gene GPR179: skipping.
Problem with re-annotating mutations in gene GPR18: skipping.
Problem with re-annotating mutations in gene GPR180: skipping.
Problem with re-annotating mutations in gene GPR182: skipping.
Problem with re-annotating mutations in gene GPR183: skipping.
Problem with re-annotating mutations in gene GPR19: skipping.
Problem with re-annotating mutations in gene GPR21: skipping.
Problem with re-annotating mutations in gene GPR22: skipping.
Problem with re-annotating mutations in gene GPR26: skipping.
Problem with re-annotating mutations in gene GPR31: skipping.
Problem with re-annotating mutations in gene GPR32: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GPR34: skipping.
Problem with re-annotating mutations in gene GPR37: skipping.
Problem with re-annotating mutations in gene GPR37L1: skipping.
Problem with re-annotating mutations in gene GPR39: skipping.
Problem with re-annotating mutations in gene GPR45: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GPR50: skipping.
Problem with re-annotating mutations in gene GPR52: skipping.
Problem with re-annotating mutations in gene GPR56: skipping.
Problem with re-annotating mutations in gene GPR6: skipping.
Problem with re-annotating mutations in gene GPR61: skipping.
Problem with re-annotating mutations in gene GPR63: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GPR64: skipping.
Problem with re-annotating mutations in gene GPR75: skipping.
Problem with re-annotating mutations in gene GPR77: skipping.
Problem with re-annotating mutations in gene GPR84: skipping.
Problem with re-annotating mutations in gene GPR87: skipping.
Problem with re-annotating mutations in gene GPR97: skipping.
Problem with re-annotating mutations in gene GPR98: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GPRASP1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GPRASP2: skipping.
Problem with re-annotating mutations in gene GPRC5A: skipping.
Problem with re-annotating mutations in gene GPRC5B: skipping.
Problem with re-annotating mutations in gene GPRC5C: skipping.
Problem with re-annotating mutations in gene GPRC6A: skipping.
Problem with re-annotating mutations in gene GPRIN1: skipping.
Problem with re-annotating mutations in gene GPRIN3: skipping.
5300/14661 Problem with re-annotating mutations in gene GPS2: skipping.
Problem with re-annotating mutations in gene GPSM2: skipping.
Problem with re-annotating mutations in gene GPT2: skipping.
Problem with re-annotating mutations in gene GPX2: skipping.
Problem with re-annotating mutations in gene GPX3: skipping.
Problem with re-annotating mutations in gene GPX5: skipping.
Problem with re-annotating mutations in gene GPX6: skipping.
Problem with re-annotating mutations in gene GRAMD1B: skipping.
Problem with re-annotating mutations in gene GRAMD1C: skipping.
Problem with re-annotating mutations in gene GRAMD2: skipping.
Problem with re-annotating mutations in gene GRAMD3: skipping.
Problem with re-annotating mutations in gene GRAP2: skipping.
Problem with re-annotating mutations in gene GRB14: skipping.
Problem with re-annotating mutations in gene GRB2: skipping.
Problem with re-annotating mutations in gene GREB1: skipping.
Problem with re-annotating mutations in gene GRHL2: skipping.
Problem with re-annotating mutations in gene GRHL3: skipping.
Problem with re-annotating mutations in gene GRIA1: skipping.
Problem with re-annotating mutations in gene GRIA2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GRIA3: skipping.
Problem with re-annotating mutations in gene GRIA4: skipping.
Problem with re-annotating mutations in gene GRID1: skipping.
Problem with re-annotating mutations in gene GRID2: skipping.
Problem with re-annotating mutations in gene GRIK1: skipping.
Problem with re-annotating mutations in gene GRIK2: skipping.
Problem with re-annotating mutations in gene GRIK3: skipping.
Problem with re-annotating mutations in gene GRIK4: skipping.
Problem with re-annotating mutations in gene GRIK5: skipping.
Problem with re-annotating mutations in gene GRIN2A: skipping.
Problem with re-annotating mutations in gene GRIN2B: skipping.
Problem with re-annotating mutations in gene GRIN2C: skipping.
Problem with re-annotating mutations in gene GRIN2D: skipping.
Problem with re-annotating mutations in gene GRIN3A: skipping.
Problem with re-annotating mutations in gene GRIP1: skipping.
Problem with re-annotating mutations in gene GRIP2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GRIPAP1: skipping.
Problem with re-annotating mutations in gene GRK1: skipping.
Problem with re-annotating mutations in gene GRK4: skipping.
Problem with re-annotating mutations in gene GRK5: skipping.
Problem with re-annotating mutations in gene GRK6: skipping.
Problem with re-annotating mutations in gene GRK7: skipping.
Problem with re-annotating mutations in gene GRLF1: skipping.
Problem with re-annotating mutations in gene GRM1: skipping.
Problem with re-annotating mutations in gene GRM2: skipping.
Problem with re-annotating mutations in gene GRM3: skipping.
Problem with re-annotating mutations in gene GRM4: skipping.
Problem with re-annotating mutations in gene GRM5: skipping.
Problem with re-annotating mutations in gene GRM6: skipping.
Problem with re-annotating mutations in gene GRM7: skipping.
Problem with re-annotating mutations in gene GRM8: skipping.
Problem with re-annotating mutations in gene GRN: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GRPR: skipping.
Problem with re-annotating mutations in gene GRXCR1: skipping.
Problem with re-annotating mutations in gene GRXCR2: skipping.
Problem with re-annotating mutations in gene GSDMB: skipping.
Problem with re-annotating mutations in gene GSDMC: skipping.
Problem with re-annotating mutations in gene GSG1: skipping.
Problem with re-annotating mutations in gene GSG1L: skipping.
Problem with re-annotating mutations in gene GSG2: skipping.
Problem with re-annotating mutations in gene GSK3A: skipping.
Problem with re-annotating mutations in gene GSK3B: skipping.
Problem with re-annotating mutations in gene GSS: skipping.
Problem with re-annotating mutations in gene GSTA3: skipping.
Problem with re-annotating mutations in gene GSTA5: skipping.
Problem with re-annotating mutations in gene GSTCD: skipping.
Problem with re-annotating mutations in gene GSTM2: skipping.
Problem with re-annotating mutations in gene GSTM3: skipping.
Problem with re-annotating mutations in gene GSTM4: skipping.
Problem with re-annotating mutations in gene GSTZ1: skipping.
Problem with re-annotating mutations in gene GTDC1: skipping.
Problem with re-annotating mutations in gene GTF2A1: skipping.
Problem with re-annotating mutations in gene GTF2E1: skipping.
Problem with re-annotating mutations in gene GTF2F1: skipping.
Problem with re-annotating mutations in gene GTF2H1: skipping.
5400/14661 Problem with re-annotating mutations in gene GTF2H3: skipping.
Problem with re-annotating mutations in gene GTF2IRD1: skipping.
Problem with re-annotating mutations in gene GTF3A: skipping.
Problem with re-annotating mutations in gene GTF3C1: skipping.
Problem with re-annotating mutations in gene GTF3C2: skipping.
Problem with re-annotating mutations in gene GTF3C3: skipping.
Problem with re-annotating mutations in gene GTF3C5: skipping.
Problem with re-annotating mutations in gene GTPBP1: skipping.
Problem with re-annotating mutations in gene GTPBP10: skipping.
Problem with re-annotating mutations in gene GTPBP2: skipping.
Problem with re-annotating mutations in gene GTPBP3: skipping.
Problem with re-annotating mutations in gene GTPBP4: skipping.
Problem with re-annotating mutations in gene GTSE1: skipping.
Problem with re-annotating mutations in gene GUCA1A: skipping.
Problem with re-annotating mutations in gene GUCA1B: skipping.
Problem with re-annotating mutations in gene GUCA2B: skipping.
Problem with re-annotating mutations in gene GUCY1A2: skipping.
Problem with re-annotating mutations in gene GUCY1A3: skipping.
Problem with re-annotating mutations in gene GUCY1B3: skipping.
Problem with re-annotating mutations in gene GUCY2C: skipping.
Problem with re-annotating mutations in gene GUCY2D: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GUCY2F: skipping.
Problem with re-annotating mutations in gene GUF1: skipping.
Problem with re-annotating mutations in gene GULP1: skipping.
Problem with re-annotating mutations in gene GUSB: skipping.
Problem with re-annotating mutations in gene GXYLT1: skipping.
Problem with re-annotating mutations in gene GXYLT2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene GYG2: skipping.
Problem with re-annotating mutations in gene GYLTL1B: skipping.
Problem with re-annotating mutations in gene GYPB: skipping.
Problem with re-annotating mutations in gene GYS1: skipping.
Problem with re-annotating mutations in gene GYS2: skipping.
Problem with re-annotating mutations in gene GZF1: skipping.
Problem with re-annotating mutations in gene GZMA: skipping.
Problem with re-annotating mutations in gene GZMB: skipping.
Problem with re-annotating mutations in gene GZMK: skipping.
Problem with re-annotating mutations in gene H2AFY: skipping.
Problem with re-annotating mutations in gene H2AFY2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene H2BFWT: skipping.
Problem with re-annotating mutations in gene H3F3C: skipping.
Problem with re-annotating mutations in gene H6PD: skipping.
Problem with re-annotating mutations in gene HAAO: skipping.
Problem with re-annotating mutations in gene HABP2: skipping.
Problem with re-annotating mutations in gene HACE1: skipping.
Problem with re-annotating mutations in gene HACL1: skipping.
Problem with re-annotating mutations in gene HADHA: skipping.
Problem with re-annotating mutations in gene HADHB: skipping.
Problem with re-annotating mutations in gene HAL: skipping.
Problem with re-annotating mutations in gene HAND1: skipping.
Problem with re-annotating mutations in gene HAO1: skipping.
Problem with re-annotating mutations in gene HAO2: skipping.
Problem with re-annotating mutations in gene HAP1: skipping.
Problem with re-annotating mutations in gene HAPLN1: skipping.
Problem with re-annotating mutations in gene HAPLN3: skipping.
Problem with re-annotating mutations in gene HAPLN4: skipping.
Problem with re-annotating mutations in gene HARS: skipping.
Problem with re-annotating mutations in gene HARS2: skipping.
Problem with re-annotating mutations in gene HAS1: skipping.
Problem with re-annotating mutations in gene HAS2: skipping.
Problem with re-annotating mutations in gene HAS3: skipping.
Problem with re-annotating mutations in gene HAT1: skipping.
Problem with re-annotating mutations in gene HAUS1: skipping.
Problem with re-annotating mutations in gene HAUS3: skipping.
Problem with re-annotating mutations in gene HAUS5: skipping.
Problem with re-annotating mutations in gene HAUS6: skipping.
Problem with re-annotating mutations in gene HAUS8: skipping.
Problem with re-annotating mutations in gene HAVCR1: skipping.
Problem with re-annotating mutations in gene HAVCR2: skipping.
Problem with re-annotating mutations in gene HBB: skipping.
Problem with re-annotating mutations in gene HBE1: skipping.
Problem with re-annotating mutations in gene HBP1: skipping.
Problem with re-annotating mutations in gene HBS1L: skipping.
Problem with re-annotating mutations in gene HBXIP: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene HCCS: skipping.
5500/14661 Problem with re-annotating mutations in gene HCFC2: skipping.
Problem with re-annotating mutations in gene HCK: skipping.
Problem with re-annotating mutations in gene HCLS1: skipping.
Problem with re-annotating mutations in gene HCN1: skipping.
Problem with re-annotating mutations in gene HCN3: skipping.
Problem with re-annotating mutations in gene HCN4: skipping.
Problem with re-annotating mutations in gene HDAC1: skipping.
Problem with re-annotating mutations in gene HDAC2: skipping.
Problem with re-annotating mutations in gene HDAC3: skipping.
Problem with re-annotating mutations in gene HDAC4: skipping.
Problem with re-annotating mutations in gene HDAC5: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene HDAC6: skipping.
Problem with re-annotating mutations in gene HDAC7: skipping.
Problem with re-annotating mutations in gene HDAC9: skipping.
Problem with re-annotating mutations in gene HDC: skipping.
Problem with re-annotating mutations in gene HDHD3: skipping.
Problem with re-annotating mutations in gene HDLBP: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene HDX: skipping.
Problem with re-annotating mutations in gene HEATR1: skipping.
Problem with re-annotating mutations in gene HEATR2: skipping.
Problem with re-annotating mutations in gene HEATR3: skipping.
Problem with re-annotating mutations in gene HEATR4: skipping.
Problem with re-annotating mutations in gene HEATR5A: skipping.
Problem with re-annotating mutations in gene HEATR5B: skipping.
Problem with re-annotating mutations in gene HEATR6: skipping.
Problem with re-annotating mutations in gene HEATR7B2: skipping.
Problem with re-annotating mutations in gene HEBP1: skipping.
Problem with re-annotating mutations in gene HECA: skipping.
Problem with re-annotating mutations in gene HECTD1: skipping.
Problem with re-annotating mutations in gene HECTD2: skipping.
Problem with re-annotating mutations in gene HECTD3: skipping.
Problem with re-annotating mutations in gene HECW1: skipping.
Problem with re-annotating mutations in gene HECW2: skipping.
Problem with re-annotating mutations in gene HEG1: skipping.
Problem with re-annotating mutations in gene HELB: skipping.
Problem with re-annotating mutations in gene HELLS: skipping.
Problem with re-annotating mutations in gene HELQ: skipping.
Problem with re-annotating mutations in gene HELT: skipping.
Problem with re-annotating mutations in gene HELZ: skipping.
Problem with re-annotating mutations in gene HEMGN: skipping.
Problem with re-annotating mutations in gene HEPACAM: skipping.
Problem with re-annotating mutations in gene HEPACAM2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene HEPH: skipping.
Problem with re-annotating mutations in gene HEPHL1: skipping.
Problem with re-annotating mutations in gene HERC1: skipping.
Problem with re-annotating mutations in gene HERC2: skipping.
Problem with re-annotating mutations in gene HERC3: skipping.
Problem with re-annotating mutations in gene HERC4: skipping.
Problem with re-annotating mutations in gene HERC5: skipping.
Problem with re-annotating mutations in gene HERC6: skipping.
Problem with re-annotating mutations in gene HERPUD2: skipping.
Problem with re-annotating mutations in gene HESX1: skipping.
Problem with re-annotating mutations in gene HEXB: skipping.
Problem with re-annotating mutations in gene HEXIM2: skipping.
Problem with re-annotating mutations in gene HEY1: skipping.
Problem with re-annotating mutations in gene HEY2: skipping.
Problem with re-annotating mutations in gene HEYL: skipping.
Problem with re-annotating mutations in gene HFE: skipping.
Problem with re-annotating mutations in gene HFE2: skipping.
Problem with re-annotating mutations in gene HFM1: skipping.
Problem with re-annotating mutations in gene HGD: skipping.
Problem with re-annotating mutations in gene HGF: skipping.
Problem with re-annotating mutations in gene HGFAC: skipping.
Problem with re-annotating mutations in gene HGSNAT: skipping.
Problem with re-annotating mutations in gene HHAT: skipping.
Problem with re-annotating mutations in gene HHATL: skipping.
Problem with re-annotating mutations in gene HHEX: skipping.
Problem with re-annotating mutations in gene HHIP: skipping.
Problem with re-annotating mutations in gene HHIPL2: skipping.
Problem with re-annotating mutations in gene HHLA2: skipping.
Problem with re-annotating mutations in gene HHLA3: skipping.
Problem with re-annotating mutations in gene HIAT1: skipping.
Problem with re-annotating mutations in gene HIATL1: skipping.
Problem with re-annotating mutations in gene HIF1A: skipping.
Problem with re-annotating mutations in gene HIF1AN: skipping.
Problem with re-annotating mutations in gene HIF3A: skipping.
Problem with re-annotating mutations in gene HIGD1B: skipping.
Problem with re-annotating mutations in gene HINFP: skipping.
Problem with re-annotating mutations in gene HIP1: skipping.
Problem with re-annotating mutations in gene HIP1R: skipping.
Problem with re-annotating mutations in gene HIPK1: skipping.
Problem with re-annotating mutations in gene HIPK2: skipping.
Problem with re-annotating mutations in gene HIPK3: skipping.
5600/14661 Problem with re-annotating mutations in gene HIPK4: skipping.
Problem with re-annotating mutations in gene HIRA: skipping.
Problem with re-annotating mutations in gene HIRIP3: skipping.
Problem with re-annotating mutations in gene HIST1H1A: skipping.
Problem with re-annotating mutations in gene HIST1H1D: skipping.
Problem with re-annotating mutations in gene HIST1H2AA: skipping.
Problem with re-annotating mutations in gene HIST1H2BA: skipping.
Problem with re-annotating mutations in gene HIST1H2BB: skipping.
Problem with re-annotating mutations in gene HIST1H2BD: skipping.
Problem with re-annotating mutations in gene HIST1H2BM: skipping.
Problem with re-annotating mutations in gene HIST1H3C: skipping.
Problem with re-annotating mutations in gene HIST1H3D: skipping.
Problem with re-annotating mutations in gene HIST1H4E: skipping.
Problem with re-annotating mutations in gene HIST3H3: skipping.
Problem with re-annotating mutations in gene HIVEP1: skipping.
Problem with re-annotating mutations in gene HIVEP2: skipping.
Problem with re-annotating mutations in gene HIVEP3: skipping.
Problem with re-annotating mutations in gene HJURP: skipping.
Problem with re-annotating mutations in gene HK1: skipping.
Problem with re-annotating mutations in gene HK2: skipping.
Problem with re-annotating mutations in gene HK3: skipping.
Problem with re-annotating mutations in gene HKDC1: skipping.
Problem with re-annotating mutations in gene HKR1: skipping.
WARNING: unknown chromosome(s):
    'chr6_qbl_hap2'

Problem with re-annotating mutations in gene HLA-A: skipping.
Problem with re-annotating mutations in gene HLA-B: skipping.
Problem with re-annotating mutations in gene HLA-C: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene HLA-DMA: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene HLA-DPB1: skipping.
WARNING: unknown chromosome(s):
    'chr6_qbl_hap2'

Problem with re-annotating mutations in gene HLA-DQA2: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene HLA-DRA: skipping.
Problem with re-annotating mutations in gene HLA-DRB1: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene HLA-F: skipping.
Problem with re-annotating mutations in gene HLA-G: skipping.
Problem with re-annotating mutations in gene HLCS: skipping.
Problem with re-annotating mutations in gene HLF: skipping.
Problem with re-annotating mutations in gene HLTF: skipping.
Problem with re-annotating mutations in gene HLX: skipping.
Problem with re-annotating mutations in gene HMBS: skipping.
Problem with re-annotating mutations in gene HMCN1: skipping.
Problem with re-annotating mutations in gene HMG20A: skipping.
Problem with re-annotating mutations in gene HMGCLL1: skipping.
Problem with re-annotating mutations in gene HMGCR: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene HMGN5: skipping.
Problem with re-annotating mutations in gene HMGXB4: skipping.
Problem with re-annotating mutations in gene HMMR: skipping.
Problem with re-annotating mutations in gene HMOX1: skipping.
Problem with re-annotating mutations in gene HMOX2: skipping.
Problem with re-annotating mutations in gene HMSD: skipping.
Problem with re-annotating mutations in gene HNF1A: skipping.
Problem with re-annotating mutations in gene HNF1B: skipping.
Problem with re-annotating mutations in gene HNF4A: skipping.
Problem with re-annotating mutations in gene HNF4G: skipping.
Problem with re-annotating mutations in gene HNMT: skipping.
Problem with re-annotating mutations in gene HNRNPA1: skipping.
Problem with re-annotating mutations in gene HNRNPA2B1: skipping.
5700/14661 Problem with re-annotating mutations in gene HNRNPA3: skipping.
Problem with re-annotating mutations in gene HNRNPAB: skipping.
Problem with re-annotating mutations in gene HNRNPCL1: skipping.
Problem with re-annotating mutations in gene HNRNPD: skipping.
Problem with re-annotating mutations in gene HNRNPF: skipping.
Problem with re-annotating mutations in gene HNRNPK: skipping.
Problem with re-annotating mutations in gene HNRNPL: skipping.
Problem with re-annotating mutations in gene HNRNPM: skipping.
Problem with re-annotating mutations in gene HNRNPUL1: skipping.
Problem with re-annotating mutations in gene HNRNPUL2: skipping.
Problem with re-annotating mutations in gene HOMER1: skipping.
Problem with re-annotating mutations in gene HOMEZ: skipping.
Problem with re-annotating mutations in gene HOOK1: skipping.
Problem with re-annotating mutations in gene HOOK3: skipping.
Problem with re-annotating mutations in gene HORMAD1: skipping.
Problem with re-annotating mutations in gene HOXA1: skipping.
Problem with re-annotating mutations in gene HOXA11: skipping.
Problem with re-annotating mutations in gene HOXA2: skipping.
Problem with re-annotating mutations in gene HOXA3: skipping.
Problem with re-annotating mutations in gene HOXA4: skipping.
Problem with re-annotating mutations in gene HOXA6: skipping.
Problem with re-annotating mutations in gene HOXB3: skipping.
Problem with re-annotating mutations in gene HOXC12: skipping.
Problem with re-annotating mutations in gene HOXC13: skipping.
Problem with re-annotating mutations in gene HOXC4: skipping.
Problem with re-annotating mutations in gene HOXD1: skipping.
Problem with re-annotating mutations in gene HOXD10: skipping.
Problem with re-annotating mutations in gene HOXD3: skipping.
Problem with re-annotating mutations in gene HOXD8: skipping.
Problem with re-annotating mutations in gene HOXD9: skipping.
Problem with re-annotating mutations in gene HP1BP3: skipping.
Problem with re-annotating mutations in gene HPD: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene HPRT1: skipping.
Problem with re-annotating mutations in gene HPS1: skipping.
Problem with re-annotating mutations in gene HPS3: skipping.
Problem with re-annotating mutations in gene HPS5: skipping.
Problem with re-annotating mutations in gene HPS6: skipping.
Problem with re-annotating mutations in gene HPSE: skipping.
Problem with re-annotating mutations in gene HPSE2: skipping.
Problem with re-annotating mutations in gene HR: skipping.
Problem with re-annotating mutations in gene HRASLS: skipping.
Problem with re-annotating mutations in gene HRASLS5: skipping.
Problem with re-annotating mutations in gene HRC: skipping.
Problem with re-annotating mutations in gene HRG: skipping.
Problem with re-annotating mutations in gene HRH2: skipping.
Problem with re-annotating mutations in gene HRH4: skipping.
Problem with re-annotating mutations in gene HRNR: skipping.
Problem with re-annotating mutations in gene HRSP12: skipping.
Problem with re-annotating mutations in gene HS2ST1: skipping.
Problem with re-annotating mutations in gene HS3ST1: skipping.
Problem with re-annotating mutations in gene HS3ST2: skipping.
Problem with re-annotating mutations in gene HS3ST3B1: skipping.
Problem with re-annotating mutations in gene HS3ST4: skipping.
Problem with re-annotating mutations in gene HS3ST5: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene HS6ST2: skipping.
Problem with re-annotating mutations in gene HS6ST3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene HSD17B10: skipping.
Problem with re-annotating mutations in gene HSD17B12: skipping.
Problem with re-annotating mutations in gene HSD17B14: skipping.
Problem with re-annotating mutations in gene HSD17B2: skipping.
Problem with re-annotating mutations in gene HSD17B3: skipping.
Problem with re-annotating mutations in gene HSD17B4: skipping.
Problem with re-annotating mutations in gene HSD17B6: skipping.
Problem with re-annotating mutations in gene HSD3B1: skipping.
5800/14661 Problem with re-annotating mutations in gene HSD3B7: skipping.
Problem with re-annotating mutations in gene HSDL1: skipping.
Problem with re-annotating mutations in gene HSF2: skipping.
Problem with re-annotating mutations in gene HSF2BP: skipping.
Problem with re-annotating mutations in gene HSF5: skipping.
Problem with re-annotating mutations in gene HSH2D: skipping.
Problem with re-annotating mutations in gene HSP90AA1: skipping.
Problem with re-annotating mutations in gene HSP90AB1: skipping.
Problem with re-annotating mutations in gene HSP90B1: skipping.
Problem with re-annotating mutations in gene HSPA12A: skipping.
Problem with re-annotating mutations in gene HSPA13: skipping.
Problem with re-annotating mutations in gene HSPA1L: skipping.
Problem with re-annotating mutations in gene HSPA2: skipping.
Problem with re-annotating mutations in gene HSPA4: skipping.
Problem with re-annotating mutations in gene HSPA4L: skipping.
Problem with re-annotating mutations in gene HSPA6: skipping.
Problem with re-annotating mutations in gene HSPA8: skipping.
Problem with re-annotating mutations in gene HSPA9: skipping.
Problem with re-annotating mutations in gene HSPB2: skipping.
Problem with re-annotating mutations in gene HSPB3: skipping.
Problem with re-annotating mutations in gene HSPBP1: skipping.
Problem with re-annotating mutations in gene HSPD1: skipping.
Problem with re-annotating mutations in gene HSPG2: skipping.
Problem with re-annotating mutations in gene HSPH1: skipping.
Problem with re-annotating mutations in gene HTATIP2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene HTATSF1: skipping.
Problem with re-annotating mutations in gene HTR1A: skipping.
Problem with re-annotating mutations in gene HTR1B: skipping.
Problem with re-annotating mutations in gene HTR1D: skipping.
Problem with re-annotating mutations in gene HTR1E: skipping.
Problem with re-annotating mutations in gene HTR1F: skipping.
Problem with re-annotating mutations in gene HTR2A: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene HTR2C: skipping.
Problem with re-annotating mutations in gene HTR3A: skipping.
Problem with re-annotating mutations in gene HTR3B: skipping.
Problem with re-annotating mutations in gene HTR3C: skipping.
Problem with re-annotating mutations in gene HTR3D: skipping.
Problem with re-annotating mutations in gene HTR3E: skipping.
Problem with re-annotating mutations in gene HTR4: skipping.
Problem with re-annotating mutations in gene HTR5A: skipping.
Problem with re-annotating mutations in gene HTR7: skipping.
Problem with re-annotating mutations in gene HTRA1: skipping.
Problem with re-annotating mutations in gene HTRA2: skipping.
Problem with re-annotating mutations in gene HTT: skipping.
Problem with re-annotating mutations in gene HUNK: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene HUWE1: skipping.
Problem with re-annotating mutations in gene HVCN1: skipping.
Problem with re-annotating mutations in gene HYAL4: skipping.
Problem with re-annotating mutations in gene HYDIN: skipping.
Problem with re-annotating mutations in gene HYLS1: skipping.
Problem with re-annotating mutations in gene HYOU1: skipping.
Problem with re-annotating mutations in gene IAH1: skipping.
Problem with re-annotating mutations in gene IARS: skipping.
Problem with re-annotating mutations in gene IARS2: skipping.
Problem with re-annotating mutations in gene IBSP: skipping.
Problem with re-annotating mutations in gene IBTK: skipping.
Problem with re-annotating mutations in gene ICA1: skipping.
Problem with re-annotating mutations in gene ICA1L: skipping.
Problem with re-annotating mutations in gene ICAM1: skipping.
Problem with re-annotating mutations in gene ICAM4: skipping.
Problem with re-annotating mutations in gene ICAM5: skipping.
Problem with re-annotating mutations in gene ICK: skipping.
Problem with re-annotating mutations in gene IDE: skipping.
Problem with re-annotating mutations in gene IDH1: skipping.
Problem with re-annotating mutations in gene IDH2: skipping.
Problem with re-annotating mutations in gene IDH3A: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene IDH3G: skipping.
Problem with re-annotating mutations in gene IDO1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene IDS: skipping.
Problem with re-annotating mutations in gene IFI35: skipping.
Problem with re-annotating mutations in gene IFI44: skipping.
5900/14661 Problem with re-annotating mutations in gene IFIH1: skipping.
Problem with re-annotating mutations in gene IFIT1: skipping.
Problem with re-annotating mutations in gene IFIT2: skipping.
Problem with re-annotating mutations in gene IFIT3: skipping.
Problem with re-annotating mutations in gene IFIT5: skipping.
Problem with re-annotating mutations in gene IFLTD1: skipping.
Problem with re-annotating mutations in gene IFNA10: skipping.
Problem with re-annotating mutations in gene IFNA13: skipping.
Problem with re-annotating mutations in gene IFNA16: skipping.
Problem with re-annotating mutations in gene IFNA2: skipping.
Problem with re-annotating mutations in gene IFNA4: skipping.
Problem with re-annotating mutations in gene IFNA6: skipping.
Problem with re-annotating mutations in gene IFNAR1: skipping.
Problem with re-annotating mutations in gene IFNAR2: skipping.
Problem with re-annotating mutations in gene IFNE: skipping.
Problem with re-annotating mutations in gene IFNGR1: skipping.
Problem with re-annotating mutations in gene IFNGR2: skipping.
Problem with re-annotating mutations in gene IFRD1: skipping.
Problem with re-annotating mutations in gene IFRD2: skipping.
Problem with re-annotating mutations in gene IFT122: skipping.
Problem with re-annotating mutations in gene IFT140: skipping.
Problem with re-annotating mutations in gene IFT172: skipping.
Problem with re-annotating mutations in gene IFT57: skipping.
Problem with re-annotating mutations in gene IFT80: skipping.
Problem with re-annotating mutations in gene IFT81: skipping.
Problem with re-annotating mutations in gene IFT88: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene IGBP1: skipping.
Problem with re-annotating mutations in gene IGDCC3: skipping.
Problem with re-annotating mutations in gene IGDCC4: skipping.
Problem with re-annotating mutations in gene IGF1: skipping.
Problem with re-annotating mutations in gene IGF1R: skipping.
Problem with re-annotating mutations in gene IGF2BP1: skipping.
Problem with re-annotating mutations in gene IGF2BP3: skipping.
Problem with re-annotating mutations in gene IGF2R: skipping.
Problem with re-annotating mutations in gene IGFBP1: skipping.
Problem with re-annotating mutations in gene IGFBP3: skipping.
Problem with re-annotating mutations in gene IGFBP4: skipping.
Problem with re-annotating mutations in gene IGHMBP2: skipping.
Problem with re-annotating mutations in gene IGJ: skipping.
Problem with re-annotating mutations in gene IGLON5: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene IGSF1: skipping.
Problem with re-annotating mutations in gene IGSF10: skipping.
Problem with re-annotating mutations in gene IGSF11: skipping.
Problem with re-annotating mutations in gene IGSF21: skipping.
Problem with re-annotating mutations in gene IGSF22: skipping.
Problem with re-annotating mutations in gene IGSF3: skipping.
Problem with re-annotating mutations in gene IGSF5: skipping.
Problem with re-annotating mutations in gene IGSF8: skipping.
Problem with re-annotating mutations in gene IGSF9: skipping.
Problem with re-annotating mutations in gene IGSF9B: skipping.
Problem with re-annotating mutations in gene IK: skipping.
Problem with re-annotating mutations in gene IKBIP: skipping.
Problem with re-annotating mutations in gene IKBKAP: skipping.
Problem with re-annotating mutations in gene IKBKB: skipping.
Problem with re-annotating mutations in gene IKBKE: skipping.
Problem with re-annotating mutations in gene IKZF1: skipping.
Problem with re-annotating mutations in gene IKZF2: skipping.
Problem with re-annotating mutations in gene IKZF3: skipping.
Problem with re-annotating mutations in gene IL10: skipping.
Problem with re-annotating mutations in gene IL10RA: skipping.
Problem with re-annotating mutations in gene IL10RB: skipping.
Problem with re-annotating mutations in gene IL12B: skipping.
Problem with re-annotating mutations in gene IL12RB1: skipping.
Problem with re-annotating mutations in gene IL12RB2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene IL13RA1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene IL13RA2: skipping.
Problem with re-annotating mutations in gene IL16: skipping.
Problem with re-annotating mutations in gene IL17A: skipping.
Problem with re-annotating mutations in gene IL17RA: skipping.
Problem with re-annotating mutations in gene IL17RC: skipping.
6000/14661 Problem with re-annotating mutations in gene IL17RD: skipping.
Problem with re-annotating mutations in gene IL18BP: skipping.
Problem with re-annotating mutations in gene IL18R1: skipping.
Problem with re-annotating mutations in gene IL18RAP: skipping.
Problem with re-annotating mutations in gene IL1F5: skipping.
Problem with re-annotating mutations in gene IL1R1: skipping.
Problem with re-annotating mutations in gene IL1R2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene IL1RAPL1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene IL1RAPL2: skipping.
Problem with re-annotating mutations in gene IL1RL1: skipping.
Problem with re-annotating mutations in gene IL1RL2: skipping.
Problem with re-annotating mutations in gene IL1RN: skipping.
Problem with re-annotating mutations in gene IL2: skipping.
Problem with re-annotating mutations in gene IL20: skipping.
Problem with re-annotating mutations in gene IL20RA: skipping.
Problem with re-annotating mutations in gene IL21: skipping.
Problem with re-annotating mutations in gene IL21R: skipping.
Problem with re-annotating mutations in gene IL22: skipping.
Problem with re-annotating mutations in gene IL23R: skipping.
Problem with re-annotating mutations in gene IL24: skipping.
Problem with re-annotating mutations in gene IL26: skipping.
Problem with re-annotating mutations in gene IL27RA: skipping.
Problem with re-annotating mutations in gene IL28RA: skipping.
Problem with re-annotating mutations in gene IL2RA: skipping.
Problem with re-annotating mutations in gene IL2RB: skipping.
Problem with re-annotating mutations in gene IL3: skipping.
Problem with re-annotating mutations in gene IL31: skipping.
Problem with re-annotating mutations in gene IL31RA: skipping.
Problem with re-annotating mutations in gene IL32: skipping.
Problem with re-annotating mutations in gene IL33: skipping.
Problem with re-annotating mutations in gene IL4: skipping.
Problem with re-annotating mutations in gene IL4I1: skipping.
Problem with re-annotating mutations in gene IL5RA: skipping.
Problem with re-annotating mutations in gene IL6: skipping.
Problem with re-annotating mutations in gene IL6R: skipping.
Problem with re-annotating mutations in gene IL6ST: skipping.
Problem with re-annotating mutations in gene IL7: skipping.
Problem with re-annotating mutations in gene IL7R: skipping.
Problem with re-annotating mutations in gene IL9: skipping.
Problem with re-annotating mutations in gene ILDR1: skipping.
Problem with re-annotating mutations in gene ILDR2: skipping.
Problem with re-annotating mutations in gene ILF3: skipping.
Problem with re-annotating mutations in gene ILKAP: skipping.
Problem with re-annotating mutations in gene ILVBL: skipping.
Problem with re-annotating mutations in gene IMMP2L: skipping.
Problem with re-annotating mutations in gene IMMT: skipping.
Problem with re-annotating mutations in gene IMP4: skipping.
Problem with re-annotating mutations in gene IMP5: skipping.
Problem with re-annotating mutations in gene IMPA1: skipping.
Problem with re-annotating mutations in gene IMPA2: skipping.
Problem with re-annotating mutations in gene IMPACT: skipping.
Problem with re-annotating mutations in gene IMPDH1: skipping.
Problem with re-annotating mutations in gene IMPDH2: skipping.
Problem with re-annotating mutations in gene IMPG1: skipping.
Problem with re-annotating mutations in gene IMPG2: skipping.
Problem with re-annotating mutations in gene INA: skipping.
Problem with re-annotating mutations in gene INADL: skipping.
Problem with re-annotating mutations in gene INF2: skipping.
Problem with re-annotating mutations in gene ING1: skipping.
Problem with re-annotating mutations in gene ING3: skipping.
Problem with re-annotating mutations in gene ING4: skipping.
Problem with re-annotating mutations in gene INHA: skipping.
Problem with re-annotating mutations in gene INHBA: skipping.
Problem with re-annotating mutations in gene INHBC: skipping.
Problem with re-annotating mutations in gene INMT: skipping.
Problem with re-annotating mutations in gene INO80: skipping.
Problem with re-annotating mutations in gene INO80D: skipping.
Problem with re-annotating mutations in gene INO80E: skipping.
Problem with re-annotating mutations in gene INPP1: skipping.
Problem with re-annotating mutations in gene INPP4A: skipping.
Problem with re-annotating mutations in gene INPP4B: skipping.
Problem with re-annotating mutations in gene INPP5A: skipping.
Problem with re-annotating mutations in gene INPP5D: skipping.
Problem with re-annotating mutations in gene INPP5F: skipping.
6100/14661 Problem with re-annotating mutations in gene INPP5K: skipping.
Problem with re-annotating mutations in gene INPPL1: skipping.
Problem with re-annotating mutations in gene INSC: skipping.
Problem with re-annotating mutations in gene INSL6: skipping.
Problem with re-annotating mutations in gene INSR: skipping.
Problem with re-annotating mutations in gene INSRR: skipping.
Problem with re-annotating mutations in gene INTS1: skipping.
Problem with re-annotating mutations in gene INTS10: skipping.
Problem with re-annotating mutations in gene INTS12: skipping.
Problem with re-annotating mutations in gene INTS2: skipping.
Problem with re-annotating mutations in gene INTS3: skipping.
Problem with re-annotating mutations in gene INTS4: skipping.
Problem with re-annotating mutations in gene INTS5: skipping.
Problem with re-annotating mutations in gene INTS6: skipping.
Problem with re-annotating mutations in gene INTS7: skipping.
Problem with re-annotating mutations in gene INTS8: skipping.
Problem with re-annotating mutations in gene INTS9: skipping.
Problem with re-annotating mutations in gene INTU: skipping.
Problem with re-annotating mutations in gene INVS: skipping.
Problem with re-annotating mutations in gene IP6K1: skipping.
Problem with re-annotating mutations in gene IP6K3: skipping.
Problem with re-annotating mutations in gene IPMK: skipping.
Problem with re-annotating mutations in gene IPO11: skipping.
Problem with re-annotating mutations in gene IPO13: skipping.
Problem with re-annotating mutations in gene IPO4: skipping.
Problem with re-annotating mutations in gene IPO5: skipping.
Problem with re-annotating mutations in gene IPO7: skipping.
Problem with re-annotating mutations in gene IPO8: skipping.
Problem with re-annotating mutations in gene IPO9: skipping.
Problem with re-annotating mutations in gene IPP: skipping.
Problem with re-annotating mutations in gene IPPK: skipping.
Problem with re-annotating mutations in gene IQCA1: skipping.
Problem with re-annotating mutations in gene IQCB1: skipping.
Problem with re-annotating mutations in gene IQCD: skipping.
Problem with re-annotating mutations in gene IQCE: skipping.
Problem with re-annotating mutations in gene IQCF1: skipping.
Problem with re-annotating mutations in gene IQCF2: skipping.
Problem with re-annotating mutations in gene IQCF3: skipping.
Problem with re-annotating mutations in gene IQCG: skipping.
Problem with re-annotating mutations in gene IQCH: skipping.
Problem with re-annotating mutations in gene IQCK: skipping.
Problem with re-annotating mutations in gene IQGAP1: skipping.
Problem with re-annotating mutations in gene IQGAP2: skipping.
Problem with re-annotating mutations in gene IQGAP3: skipping.
Problem with re-annotating mutations in gene IQSEC1: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene IQSEC2: skipping.
Problem with re-annotating mutations in gene IQSEC3: skipping.
Problem with re-annotating mutations in gene IQUB: skipping.
Problem with re-annotating mutations in gene IRAK1BP1: skipping.
Problem with re-annotating mutations in gene IRAK2: skipping.
Problem with re-annotating mutations in gene IRAK3: skipping.
Problem with re-annotating mutations in gene IRAK4: skipping.
Problem with re-annotating mutations in gene IREB2: skipping.
Problem with re-annotating mutations in gene IRF2: skipping.
Problem with re-annotating mutations in gene IRF3: skipping.
Problem with re-annotating mutations in gene IRF4: skipping.
Problem with re-annotating mutations in gene IRF5: skipping.
Problem with re-annotating mutations in gene IRF6: skipping.
Problem with re-annotating mutations in gene IRF9: skipping.
Problem with re-annotating mutations in gene IRGC: skipping.
Problem with re-annotating mutations in gene IRGQ: skipping.
Problem with re-annotating mutations in gene IRS1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene IRS4: skipping.
Problem with re-annotating mutations in gene IRX1: skipping.
Problem with re-annotating mutations in gene IRX2: skipping.
Problem with re-annotating mutations in gene IRX3: skipping.
Problem with re-annotating mutations in gene IRX5: skipping.
Problem with re-annotating mutations in gene IRX6: skipping.
Problem with re-annotating mutations in gene ISL1: skipping.
Problem with re-annotating mutations in gene ISLR: skipping.
Problem with re-annotating mutations in gene ISLR2: skipping.
Problem with re-annotating mutations in gene ISM1: skipping.
Problem with re-annotating mutations in gene ISPD: skipping.
Problem with re-annotating mutations in gene ITCH: skipping.
Problem with re-annotating mutations in gene ITFG1: skipping.
Problem with re-annotating mutations in gene ITFG2: skipping.
Problem with re-annotating mutations in gene ITGA1: skipping.
Problem with re-annotating mutations in gene ITGA10: skipping.
Problem with re-annotating mutations in gene ITGA11: skipping.
Problem with re-annotating mutations in gene ITGA2: skipping.
Problem with re-annotating mutations in gene ITGA2B: skipping.
Problem with re-annotating mutations in gene ITGA3: skipping.
Problem with re-annotating mutations in gene ITGA4: skipping.
Problem with re-annotating mutations in gene ITGA5: skipping.
Problem with re-annotating mutations in gene ITGA6: skipping.
Problem with re-annotating mutations in gene ITGA7: skipping.
Problem with re-annotating mutations in gene ITGA8: skipping.
6200/14661 Problem with re-annotating mutations in gene ITGA9: skipping.
Problem with re-annotating mutations in gene ITGAD: skipping.
Problem with re-annotating mutations in gene ITGAE: skipping.
Problem with re-annotating mutations in gene ITGAL: skipping.
Problem with re-annotating mutations in gene ITGAM: skipping.
Problem with re-annotating mutations in gene ITGAV: skipping.
Problem with re-annotating mutations in gene ITGAX: skipping.
Problem with re-annotating mutations in gene ITGB1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ITGB1BP2: skipping.
Problem with re-annotating mutations in gene ITGB2: skipping.
Problem with re-annotating mutations in gene ITGB3: skipping.
Problem with re-annotating mutations in gene ITGB3BP: skipping.
Problem with re-annotating mutations in gene ITGB4: skipping.
Problem with re-annotating mutations in gene ITGB5: skipping.
Problem with re-annotating mutations in gene ITGB6: skipping.
Problem with re-annotating mutations in gene ITGB7: skipping.
Problem with re-annotating mutations in gene ITGB8: skipping.
Problem with re-annotating mutations in gene ITGBL1: skipping.
Problem with re-annotating mutations in gene ITIH1: skipping.
Problem with re-annotating mutations in gene ITIH2: skipping.
Problem with re-annotating mutations in gene ITIH3: skipping.
Problem with re-annotating mutations in gene ITIH4: skipping.
Problem with re-annotating mutations in gene ITIH5: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ITIH5L: skipping.
Problem with re-annotating mutations in gene ITK: skipping.
Problem with re-annotating mutations in gene ITLN2: skipping.
Problem with re-annotating mutations in gene ITPA: skipping.
Problem with re-annotating mutations in gene ITPK1: skipping.
Problem with re-annotating mutations in gene ITPKB: skipping.
Problem with re-annotating mutations in gene ITPR1: skipping.
Problem with re-annotating mutations in gene ITPR2: skipping.
Problem with re-annotating mutations in gene ITPR3: skipping.
Problem with re-annotating mutations in gene ITPRIP: skipping.
Problem with re-annotating mutations in gene ITPRIPL1: skipping.
Problem with re-annotating mutations in gene ITSN1: skipping.
Problem with re-annotating mutations in gene ITSN2: skipping.
Problem with re-annotating mutations in gene IVL: skipping.
Problem with re-annotating mutations in gene IVNS1ABP: skipping.
Problem with re-annotating mutations in gene IYD: skipping.
Problem with re-annotating mutations in gene IZUMO1: skipping.
Problem with re-annotating mutations in gene JAG1: skipping.
Problem with re-annotating mutations in gene JAK1: skipping.
Problem with re-annotating mutations in gene JAK2: skipping.
Problem with re-annotating mutations in gene JAK3: skipping.
Problem with re-annotating mutations in gene JAKMIP1: skipping.
Problem with re-annotating mutations in gene JAKMIP2: skipping.
Problem with re-annotating mutations in gene JAKMIP3: skipping.
Problem with re-annotating mutations in gene JAM3: skipping.
Problem with re-annotating mutations in gene JARID2: skipping.
Problem with re-annotating mutations in gene JKAMP: skipping.
Problem with re-annotating mutations in gene JMJD1C: skipping.
Problem with re-annotating mutations in gene JMJD6: skipping.
Problem with re-annotating mutations in gene JMJD7-PLA2G4B: skipping.
Problem with re-annotating mutations in gene JMY: skipping.
Problem with re-annotating mutations in gene JPH1: skipping.
Problem with re-annotating mutations in gene JPH2: skipping.
Problem with re-annotating mutations in gene JRKL: skipping.
Problem with re-annotating mutations in gene JSRP1: skipping.
Problem with re-annotating mutations in gene JTB: skipping.
Problem with re-annotating mutations in gene JUP: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene KAL1: skipping.
Problem with re-annotating mutations in gene KALRN: skipping.
Problem with re-annotating mutations in gene KANK1: skipping.
Problem with re-annotating mutations in gene KANK4: skipping.
Problem with re-annotating mutations in gene KARS: skipping.
Problem with re-annotating mutations in gene KAT2B: skipping.
Problem with re-annotating mutations in gene KAT5: skipping.
Problem with re-annotating mutations in gene KATNAL1: skipping.
Problem with re-annotating mutations in gene KATNAL2: skipping.
Problem with re-annotating mutations in gene KBTBD10: skipping.
Problem with re-annotating mutations in gene KBTBD12: skipping.
Problem with re-annotating mutations in gene KBTBD2: skipping.
Problem with re-annotating mutations in gene KBTBD3: skipping.
Problem with re-annotating mutations in gene KBTBD4: skipping.
Problem with re-annotating mutations in gene KBTBD5: skipping.
Problem with re-annotating mutations in gene KBTBD6: skipping.
Problem with re-annotating mutations in gene KBTBD7: skipping.
Problem with re-annotating mutations in gene KBTBD8: skipping.
Problem with re-annotating mutations in gene KCNA1: skipping.
Problem with re-annotating mutations in gene KCNA10: skipping.
Problem with re-annotating mutations in gene KCNA2: skipping.
Problem with re-annotating mutations in gene KCNA3: skipping.
Problem with re-annotating mutations in gene KCNA4: skipping.
Problem with re-annotating mutations in gene KCNA5: skipping.
6300/14661 Problem with re-annotating mutations in gene KCNA6: skipping.
Problem with re-annotating mutations in gene KCNAB1: skipping.
Problem with re-annotating mutations in gene KCNB1: skipping.
Problem with re-annotating mutations in gene KCNB2: skipping.
Problem with re-annotating mutations in gene KCNC1: skipping.
Problem with re-annotating mutations in gene KCNC2: skipping.
Problem with re-annotating mutations in gene KCNC3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene KCND1: skipping.
Problem with re-annotating mutations in gene KCND2: skipping.
Problem with re-annotating mutations in gene KCND3: skipping.
Problem with re-annotating mutations in gene KCNE1: skipping.
Problem with re-annotating mutations in gene KCNF1: skipping.
Problem with re-annotating mutations in gene KCNG1: skipping.
Problem with re-annotating mutations in gene KCNG4: skipping.
Problem with re-annotating mutations in gene KCNH1: skipping.
Problem with re-annotating mutations in gene KCNH2: skipping.
Problem with re-annotating mutations in gene KCNH3: skipping.
Problem with re-annotating mutations in gene KCNH4: skipping.
Problem with re-annotating mutations in gene KCNH5: skipping.
Problem with re-annotating mutations in gene KCNH6: skipping.
Problem with re-annotating mutations in gene KCNH7: skipping.
Problem with re-annotating mutations in gene KCNH8: skipping.
Problem with re-annotating mutations in gene KCNIP1: skipping.
Problem with re-annotating mutations in gene KCNIP2: skipping.
Problem with re-annotating mutations in gene KCNIP3: skipping.
Problem with re-annotating mutations in gene KCNJ1: skipping.
Problem with re-annotating mutations in gene KCNJ10: skipping.
Problem with re-annotating mutations in gene KCNJ11: skipping.
Problem with re-annotating mutations in gene KCNJ12: skipping.
Problem with re-annotating mutations in gene KCNJ14: skipping.
Problem with re-annotating mutations in gene KCNJ15: skipping.
Problem with re-annotating mutations in gene KCNJ16: skipping.
Problem with re-annotating mutations in gene KCNJ3: skipping.
Problem with re-annotating mutations in gene KCNJ5: skipping.
Problem with re-annotating mutations in gene KCNJ8: skipping.
Problem with re-annotating mutations in gene KCNJ9: skipping.
Problem with re-annotating mutations in gene KCNK1: skipping.
Problem with re-annotating mutations in gene KCNK10: skipping.
Problem with re-annotating mutations in gene KCNK13: skipping.
Problem with re-annotating mutations in gene KCNK17: skipping.
Problem with re-annotating mutations in gene KCNK18: skipping.
Problem with re-annotating mutations in gene KCNK2: skipping.
Problem with re-annotating mutations in gene KCNK3: skipping.
Problem with re-annotating mutations in gene KCNK5: skipping.
Problem with re-annotating mutations in gene KCNK6: skipping.
Problem with re-annotating mutations in gene KCNK9: skipping.
Problem with re-annotating mutations in gene KCNMA1: skipping.
Problem with re-annotating mutations in gene KCNMB4: skipping.
Problem with re-annotating mutations in gene KCNN1: skipping.
Problem with re-annotating mutations in gene KCNN2: skipping.
Problem with re-annotating mutations in gene KCNN3: skipping.
Problem with re-annotating mutations in gene KCNQ1: skipping.
Problem with re-annotating mutations in gene KCNQ2: skipping.
Problem with re-annotating mutations in gene KCNQ3: skipping.
Problem with re-annotating mutations in gene KCNQ4: skipping.
Problem with re-annotating mutations in gene KCNQ5: skipping.
Problem with re-annotating mutations in gene KCNRG: skipping.
Problem with re-annotating mutations in gene KCNS2: skipping.
Problem with re-annotating mutations in gene KCNS3: skipping.
Problem with re-annotating mutations in gene KCNT1: skipping.
Problem with re-annotating mutations in gene KCNT2: skipping.
Problem with re-annotating mutations in gene KCNU1: skipping.
Problem with re-annotating mutations in gene KCNV1: skipping.
Problem with re-annotating mutations in gene KCNV2: skipping.
Problem with re-annotating mutations in gene KCTD1: skipping.
Problem with re-annotating mutations in gene KCTD16: skipping.
Problem with re-annotating mutations in gene KCTD18: skipping.
Problem with re-annotating mutations in gene KCTD19: skipping.
Problem with re-annotating mutations in gene KCTD20: skipping.
Problem with re-annotating mutations in gene KCTD21: skipping.
Problem with re-annotating mutations in gene KCTD3: skipping.
Problem with re-annotating mutations in gene KCTD4: skipping.
Problem with re-annotating mutations in gene KCTD6: skipping.
Problem with re-annotating mutations in gene KCTD7: skipping.
Problem with re-annotating mutations in gene KCTD8: skipping.
Problem with re-annotating mutations in gene KDELC1: skipping.
Problem with re-annotating mutations in gene KDELC2: skipping.
Problem with re-annotating mutations in gene KDELR1: skipping.
6400/14661 Problem with re-annotating mutations in gene KDM1A: skipping.
Problem with re-annotating mutations in gene KDM1B: skipping.
Problem with re-annotating mutations in gene KDM2A: skipping.
Problem with re-annotating mutations in gene KDM2B: skipping.
Problem with re-annotating mutations in gene KDM3A: skipping.
Problem with re-annotating mutations in gene KDM3B: skipping.
Problem with re-annotating mutations in gene KDM4A: skipping.
Problem with re-annotating mutations in gene KDM4C: skipping.
Problem with re-annotating mutations in gene KDM4D: skipping.
Problem with re-annotating mutations in gene KDM5A: skipping.
Problem with re-annotating mutations in gene KDM5B: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene KDM5C: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene KDM5D: skipping.
Problem with re-annotating mutations in gene KDM6B: skipping.
Problem with re-annotating mutations in gene KDR: skipping.
Problem with re-annotating mutations in gene KDSR: skipping.
Problem with re-annotating mutations in gene KEAP1: skipping.
Problem with re-annotating mutations in gene KEL: skipping.
Problem with re-annotating mutations in gene KERA: skipping.
Problem with re-annotating mutations in gene KHDRBS1: skipping.
Problem with re-annotating mutations in gene KHDRBS2: skipping.
Problem with re-annotating mutations in gene KHDRBS3: skipping.
Problem with re-annotating mutations in gene KHNYN: skipping.
Problem with re-annotating mutations in gene KHSRP: skipping.
Problem with re-annotating mutations in gene KIAA0020: skipping.
Problem with re-annotating mutations in gene KIAA0090: skipping.
Problem with re-annotating mutations in gene KIAA0100: skipping.
Problem with re-annotating mutations in gene KIAA0141: skipping.
Problem with re-annotating mutations in gene KIAA0146: skipping.
Problem with re-annotating mutations in gene KIAA0195: skipping.
Problem with re-annotating mutations in gene KIAA0196: skipping.
Problem with re-annotating mutations in gene KIAA0226: skipping.
Problem with re-annotating mutations in gene KIAA0232: skipping.
Problem with re-annotating mutations in gene KIAA0240: skipping.
Problem with re-annotating mutations in gene KIAA0284: skipping.
Problem with re-annotating mutations in gene KIAA0319: skipping.
Problem with re-annotating mutations in gene KIAA0319L: skipping.
Problem with re-annotating mutations in gene KIAA0355: skipping.
Problem with re-annotating mutations in gene KIAA0368: skipping.
Problem with re-annotating mutations in gene KIAA0391: skipping.
Problem with re-annotating mutations in gene KIAA0406: skipping.
Problem with re-annotating mutations in gene KIAA0408: skipping.
Problem with re-annotating mutations in gene KIAA0427: skipping.
Problem with re-annotating mutations in gene KIAA0430: skipping.
Problem with re-annotating mutations in gene KIAA0467: skipping.
Problem with re-annotating mutations in gene KIAA0528: skipping.
Problem with re-annotating mutations in gene KIAA0556: skipping.
Problem with re-annotating mutations in gene KIAA0562: skipping.
Problem with re-annotating mutations in gene KIAA0564: skipping.
Problem with re-annotating mutations in gene KIAA0586: skipping.
Problem with re-annotating mutations in gene KIAA0649: skipping.
Problem with re-annotating mutations in gene KIAA0664: skipping.
Problem with re-annotating mutations in gene KIAA0748: skipping.
Problem with re-annotating mutations in gene KIAA0753: skipping.
Problem with re-annotating mutations in gene KIAA0754: skipping.
Problem with re-annotating mutations in gene KIAA0776: skipping.
Problem with re-annotating mutations in gene KIAA0802: skipping.
Problem with re-annotating mutations in gene KIAA0895: skipping.
Problem with re-annotating mutations in gene KIAA0895L: skipping.
Problem with re-annotating mutations in gene KIAA0907: skipping.
Problem with re-annotating mutations in gene KIAA0913: skipping.
Problem with re-annotating mutations in gene KIAA0922: skipping.
Problem with re-annotating mutations in gene KIAA0947: skipping.
Problem with re-annotating mutations in gene KIAA1009: skipping.
Problem with re-annotating mutations in gene KIAA1024: skipping.
Problem with re-annotating mutations in gene KIAA1033: skipping.
Problem with re-annotating mutations in gene KIAA1045: skipping.
Problem with re-annotating mutations in gene KIAA1109: skipping.
Problem with re-annotating mutations in gene KIAA1199: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene KIAA1210: skipping.
Problem with re-annotating mutations in gene KIAA1211: skipping.
Problem with re-annotating mutations in gene KIAA1217: skipping.
Problem with re-annotating mutations in gene KIAA1244: skipping.
Problem with re-annotating mutations in gene KIAA1257: skipping.
Problem with re-annotating mutations in gene KIAA1267: skipping.
Problem with re-annotating mutations in gene KIAA1274: skipping.
Problem with re-annotating mutations in gene KIAA1279: skipping.
Problem with re-annotating mutations in gene KIAA1310: skipping.
Problem with re-annotating mutations in gene KIAA1324: skipping.
Problem with re-annotating mutations in gene KIAA1324L: skipping.
Problem with re-annotating mutations in gene KIAA1328: skipping.
Problem with re-annotating mutations in gene KIAA1370: skipping.
Problem with re-annotating mutations in gene KIAA1377: skipping.
Problem with re-annotating mutations in gene KIAA1383: skipping.
Problem with re-annotating mutations in gene KIAA1407: skipping.
Problem with re-annotating mutations in gene KIAA1409: skipping.
6500/14661 Problem with re-annotating mutations in gene KIAA1429: skipping.
Problem with re-annotating mutations in gene KIAA1430: skipping.
Problem with re-annotating mutations in gene KIAA1432: skipping.
Problem with re-annotating mutations in gene KIAA1462: skipping.
Problem with re-annotating mutations in gene KIAA1467: skipping.
Problem with re-annotating mutations in gene KIAA1468: skipping.
Problem with re-annotating mutations in gene KIAA1486: skipping.
Problem with re-annotating mutations in gene KIAA1524: skipping.
Problem with re-annotating mutations in gene KIAA1530: skipping.
Problem with re-annotating mutations in gene KIAA1539: skipping.
Problem with re-annotating mutations in gene KIAA1543: skipping.
Problem with re-annotating mutations in gene KIAA1549: skipping.
Problem with re-annotating mutations in gene KIAA1586: skipping.
Problem with re-annotating mutations in gene KIAA1598: skipping.
Problem with re-annotating mutations in gene KIAA1609: skipping.
Problem with re-annotating mutations in gene KIAA1632: skipping.
Problem with re-annotating mutations in gene KIAA1644: skipping.
Problem with re-annotating mutations in gene KIAA1683: skipping.
Problem with re-annotating mutations in gene KIAA1704: skipping.
Problem with re-annotating mutations in gene KIAA1712: skipping.
Problem with re-annotating mutations in gene KIAA1715: skipping.
Problem with re-annotating mutations in gene KIAA1751: skipping.
Problem with re-annotating mutations in gene KIAA1755: skipping.
Problem with re-annotating mutations in gene KIAA1797: skipping.
Problem with re-annotating mutations in gene KIAA1804: skipping.
Problem with re-annotating mutations in gene KIAA1826: skipping.
Problem with re-annotating mutations in gene KIAA1841: skipping.
Problem with re-annotating mutations in gene KIAA1919: skipping.
Problem with re-annotating mutations in gene KIAA1949: skipping.
Problem with re-annotating mutations in gene KIAA1958: skipping.
Problem with re-annotating mutations in gene KIAA1967: skipping.
Problem with re-annotating mutations in gene KIAA2018: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene KIAA2022: skipping.
Problem with re-annotating mutations in gene KIAA2026: skipping.
Problem with re-annotating mutations in gene KIDINS220: skipping.
Problem with re-annotating mutations in gene KIF11: skipping.
Problem with re-annotating mutations in gene KIF13A: skipping.
Problem with re-annotating mutations in gene KIF13B: skipping.
Problem with re-annotating mutations in gene KIF14: skipping.
Problem with re-annotating mutations in gene KIF15: skipping.
Problem with re-annotating mutations in gene KIF16B: skipping.
Problem with re-annotating mutations in gene KIF17: skipping.
Problem with re-annotating mutations in gene KIF18A: skipping.
Problem with re-annotating mutations in gene KIF18B: skipping.
Problem with re-annotating mutations in gene KIF19: skipping.
Problem with re-annotating mutations in gene KIF1A: skipping.
Problem with re-annotating mutations in gene KIF1B: skipping.
Problem with re-annotating mutations in gene KIF1C: skipping.
Problem with re-annotating mutations in gene KIF20A: skipping.
Problem with re-annotating mutations in gene KIF20B: skipping.
Problem with re-annotating mutations in gene KIF21A: skipping.
Problem with re-annotating mutations in gene KIF21B: skipping.
Problem with re-annotating mutations in gene KIF23: skipping.
Problem with re-annotating mutations in gene KIF24: skipping.
Problem with re-annotating mutations in gene KIF25: skipping.
Problem with re-annotating mutations in gene KIF26B: skipping.
Problem with re-annotating mutations in gene KIF27: skipping.
Problem with re-annotating mutations in gene KIF2A: skipping.
Problem with re-annotating mutations in gene KIF2B: skipping.
Problem with re-annotating mutations in gene KIF2C: skipping.
Problem with re-annotating mutations in gene KIF3A: skipping.
Problem with re-annotating mutations in gene KIF3B: skipping.
Problem with re-annotating mutations in gene KIF3C: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene KIF4A: skipping.
Problem with re-annotating mutations in gene KIF4B: skipping.
Problem with re-annotating mutations in gene KIF5A: skipping.
Problem with re-annotating mutations in gene KIF5B: skipping.
Problem with re-annotating mutations in gene KIF5C: skipping.
Problem with re-annotating mutations in gene KIF6: skipping.
Problem with re-annotating mutations in gene KIF7: skipping.
Problem with re-annotating mutations in gene KIF9: skipping.
Problem with re-annotating mutations in gene KIFAP3: skipping.
Problem with re-annotating mutations in gene KIFC3: skipping.
Problem with re-annotating mutations in gene KIN: skipping.
Problem with re-annotating mutations in gene KIR2DL1: skipping.
WARNING: unknown chromosome(s):
    'chr19_random'

Problem with re-annotating mutations in gene KIR2DL4: skipping.
Problem with re-annotating mutations in gene KIR3DL1: skipping.
Problem with re-annotating mutations in gene KIR3DL2: skipping.
Problem with re-annotating mutations in gene KIR3DL3: skipping.
Problem with re-annotating mutations in gene KIRREL: skipping.
Problem with re-annotating mutations in gene KIRREL2: skipping.
Problem with re-annotating mutations in gene KIRREL3: skipping.
Problem with re-annotating mutations in gene KIT: skipping.
Problem with re-annotating mutations in gene KITLG: skipping.
Problem with re-annotating mutations in gene KL: skipping.
Problem with re-annotating mutations in gene KLB: skipping.
Problem with re-annotating mutations in gene KLC1: skipping.
Problem with re-annotating mutations in gene KLC2: skipping.
Problem with re-annotating mutations in gene KLC4: skipping.
Problem with re-annotating mutations in gene KLF11: skipping.
Problem with re-annotating mutations in gene KLF12: skipping.
Problem with re-annotating mutations in gene KLF14: skipping.
6600/14661 Problem with re-annotating mutations in gene KLF3: skipping.
Problem with re-annotating mutations in gene KLF4: skipping.
Problem with re-annotating mutations in gene KLF5: skipping.
Problem with re-annotating mutations in gene KLF7: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene KLF8: skipping.
Problem with re-annotating mutations in gene KLHDC2: skipping.
Problem with re-annotating mutations in gene KLHDC5: skipping.
Problem with re-annotating mutations in gene KLHDC7A: skipping.
Problem with re-annotating mutations in gene KLHL1: skipping.
Problem with re-annotating mutations in gene KLHL10: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene KLHL13: skipping.
Problem with re-annotating mutations in gene KLHL14: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene KLHL15: skipping.
Problem with re-annotating mutations in gene KLHL18: skipping.
Problem with re-annotating mutations in gene KLHL2: skipping.
Problem with re-annotating mutations in gene KLHL20: skipping.
Problem with re-annotating mutations in gene KLHL23: skipping.
Problem with re-annotating mutations in gene KLHL24: skipping.
Problem with re-annotating mutations in gene KLHL25: skipping.
Problem with re-annotating mutations in gene KLHL28: skipping.
Problem with re-annotating mutations in gene KLHL3: skipping.
Problem with re-annotating mutations in gene KLHL32: skipping.
Problem with re-annotating mutations in gene KLHL38: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene KLHL4: skipping.
Problem with re-annotating mutations in gene KLHL5: skipping.
Problem with re-annotating mutations in gene KLHL6: skipping.
Problem with re-annotating mutations in gene KLHL7: skipping.
Problem with re-annotating mutations in gene KLHL8: skipping.
Problem with re-annotating mutations in gene KLHL9: skipping.
Problem with re-annotating mutations in gene KLK1: skipping.
Problem with re-annotating mutations in gene KLK12: skipping.
Problem with re-annotating mutations in gene KLK13: skipping.
Problem with re-annotating mutations in gene KLK15: skipping.
Problem with re-annotating mutations in gene KLK2: skipping.
Problem with re-annotating mutations in gene KLK4: skipping.
Problem with re-annotating mutations in gene KLK5: skipping.
Problem with re-annotating mutations in gene KLKB1: skipping.
Problem with re-annotating mutations in gene KLRAQ1: skipping.
Problem with re-annotating mutations in gene KLRB1: skipping.
Problem with re-annotating mutations in gene KLRC3: skipping.
Problem with re-annotating mutations in gene KLRF1: skipping.
Problem with re-annotating mutations in gene KLRK1: skipping.
Problem with re-annotating mutations in gene KMO: skipping.
Problem with re-annotating mutations in gene KNDC1: skipping.
Problem with re-annotating mutations in gene KNG1: skipping.
Problem with re-annotating mutations in gene KNTC1: skipping.
Problem with re-annotating mutations in gene KPNA1: skipping.
Problem with re-annotating mutations in gene KPNA3: skipping.
Problem with re-annotating mutations in gene KPNA4: skipping.
Problem with re-annotating mutations in gene KPNA5: skipping.
Problem with re-annotating mutations in gene KPNA6: skipping.
Problem with re-annotating mutations in gene KPRP: skipping.
Problem with re-annotating mutations in gene KRAS: skipping.
Problem with re-annotating mutations in gene KRBA2: skipping.
Problem with re-annotating mutations in gene KREMEN1: skipping.
Problem with re-annotating mutations in gene KRI1: skipping.
Problem with re-annotating mutations in gene KRIT1: skipping.
Problem with re-annotating mutations in gene KRT1: skipping.
Problem with re-annotating mutations in gene KRT10: skipping.
Problem with re-annotating mutations in gene KRT12: skipping.
Problem with re-annotating mutations in gene KRT13: skipping.
Problem with re-annotating mutations in gene KRT14: skipping.
Problem with re-annotating mutations in gene KRT15: skipping.
Problem with re-annotating mutations in gene KRT16: skipping.
Problem with re-annotating mutations in gene KRT17: skipping.
Problem with re-annotating mutations in gene KRT18: skipping.
Problem with re-annotating mutations in gene KRT19: skipping.
Problem with re-annotating mutations in gene KRT222: skipping.
Problem with re-annotating mutations in gene KRT24: skipping.
Problem with re-annotating mutations in gene KRT25: skipping.
Problem with re-annotating mutations in gene KRT26: skipping.
Problem with re-annotating mutations in gene KRT27: skipping.
Problem with re-annotating mutations in gene KRT3: skipping.
Problem with re-annotating mutations in gene KRT31: skipping.
Problem with re-annotating mutations in gene KRT32: skipping.
6700/14661 Problem with re-annotating mutations in gene KRT33A: skipping.
Problem with re-annotating mutations in gene KRT33B: skipping.
Problem with re-annotating mutations in gene KRT34: skipping.
Problem with re-annotating mutations in gene KRT35: skipping.
Problem with re-annotating mutations in gene KRT36: skipping.
Problem with re-annotating mutations in gene KRT37: skipping.
Problem with re-annotating mutations in gene KRT38: skipping.
Problem with re-annotating mutations in gene KRT4: skipping.
WARNING: unknown chromosome(s):
    'chr17_random'

Problem with re-annotating mutations in gene KRT40: skipping.
Problem with re-annotating mutations in gene KRT5: skipping.
Problem with re-annotating mutations in gene KRT6A: skipping.
Problem with re-annotating mutations in gene KRT6B: skipping.
Problem with re-annotating mutations in gene KRT6C: skipping.
Problem with re-annotating mutations in gene KRT7: skipping.
Problem with re-annotating mutations in gene KRT71: skipping.
Problem with re-annotating mutations in gene KRT72: skipping.
Problem with re-annotating mutations in gene KRT73: skipping.
Problem with re-annotating mutations in gene KRT74: skipping.
Problem with re-annotating mutations in gene KRT75: skipping.
Problem with re-annotating mutations in gene KRT76: skipping.
Problem with re-annotating mutations in gene KRT78: skipping.
Problem with re-annotating mutations in gene KRT79: skipping.
Problem with re-annotating mutations in gene KRT82: skipping.
Problem with re-annotating mutations in gene KRT84: skipping.
Problem with re-annotating mutations in gene KRT85: skipping.
Problem with re-annotating mutations in gene KRT9: skipping.
Problem with re-annotating mutations in gene KRTAP10-6: skipping.
Problem with re-annotating mutations in gene KRTAP10-7: skipping.
Problem with re-annotating mutations in gene KRTAP11-1: skipping.
Problem with re-annotating mutations in gene KRTAP13-1: skipping.
Problem with re-annotating mutations in gene KRTAP15-1: skipping.
Problem with re-annotating mutations in gene KRTAP19-5: skipping.
Problem with re-annotating mutations in gene KRTAP19-6: skipping.
Problem with re-annotating mutations in gene KRTAP26-1: skipping.
Problem with re-annotating mutations in gene KRTAP27-1: skipping.
Problem with re-annotating mutations in gene KRTAP4-3: skipping.
Problem with re-annotating mutations in gene KRTAP5-5: skipping.
Problem with re-annotating mutations in gene KRTAP6-2: skipping.
Problem with re-annotating mutations in gene KSR1: skipping.
Problem with re-annotating mutations in gene KSR2: skipping.
Problem with re-annotating mutations in gene KTN1: skipping.
Problem with re-annotating mutations in gene KYNU: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene L1CAM: skipping.
Problem with re-annotating mutations in gene L1TD1: skipping.
Problem with re-annotating mutations in gene L2HGDH: skipping.
Problem with re-annotating mutations in gene L3MBTL2: skipping.
Problem with re-annotating mutations in gene L3MBTL3: skipping.
Problem with re-annotating mutations in gene L3MBTL4: skipping.
Problem with re-annotating mutations in gene LACE1: skipping.
Problem with re-annotating mutations in gene LACTB: skipping.
Problem with re-annotating mutations in gene LAD1: skipping.
Problem with re-annotating mutations in gene LAG3: skipping.
Problem with re-annotating mutations in gene LAIR1: skipping.
Problem with re-annotating mutations in gene LAIR2: skipping.
Problem with re-annotating mutations in gene LAMA1: skipping.
Problem with re-annotating mutations in gene LAMA2: skipping.
Problem with re-annotating mutations in gene LAMA3: skipping.
Problem with re-annotating mutations in gene LAMA4: skipping.
Problem with re-annotating mutations in gene LAMB1: skipping.
Problem with re-annotating mutations in gene LAMB2: skipping.
Problem with re-annotating mutations in gene LAMB3: skipping.
Problem with re-annotating mutations in gene LAMB4: skipping.
Problem with re-annotating mutations in gene LAMC1: skipping.
6800/14661 Problem with re-annotating mutations in gene LAMC2: skipping.
Problem with re-annotating mutations in gene LAMC3: skipping.
Problem with re-annotating mutations in gene LAMP3: skipping.
Problem with re-annotating mutations in gene LANCL1: skipping.
Problem with re-annotating mutations in gene LANCL2: skipping.
Problem with re-annotating mutations in gene LAP3: skipping.
Problem with re-annotating mutations in gene LARGE: skipping.
Problem with re-annotating mutations in gene LARP1: skipping.
Problem with re-annotating mutations in gene LARP1B: skipping.
Problem with re-annotating mutations in gene LARP4: skipping.
Problem with re-annotating mutations in gene LARP4B: skipping.
Problem with re-annotating mutations in gene LARP6: skipping.
Problem with re-annotating mutations in gene LARS: skipping.
Problem with re-annotating mutations in gene LARS2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene LAS1L: skipping.
Problem with re-annotating mutations in gene LASP1: skipping.
Problem with re-annotating mutations in gene LASS3: skipping.
Problem with re-annotating mutations in gene LASS5: skipping.
Problem with re-annotating mutations in gene LASS6: skipping.
Problem with re-annotating mutations in gene LATS1: skipping.
Problem with re-annotating mutations in gene LATS2: skipping.
Problem with re-annotating mutations in gene LAYN: skipping.
Problem with re-annotating mutations in gene LBR: skipping.
Problem with re-annotating mutations in gene LBX1: skipping.
Problem with re-annotating mutations in gene LCA5: skipping.
Problem with re-annotating mutations in gene LCA5L: skipping.
Problem with re-annotating mutations in gene LCE1A: skipping.
Problem with re-annotating mutations in gene LCE3D: skipping.
Problem with re-annotating mutations in gene LCK: skipping.
Problem with re-annotating mutations in gene LCLAT1: skipping.
Problem with re-annotating mutations in gene LCMT1: skipping.
Problem with re-annotating mutations in gene LCMT2: skipping.
Problem with re-annotating mutations in gene LCOR: skipping.
Problem with re-annotating mutations in gene LCP1: skipping.
Problem with re-annotating mutations in gene LCP2: skipping.
Problem with re-annotating mutations in gene LCT: skipping.
Problem with re-annotating mutations in gene LCTL: skipping.
Problem with re-annotating mutations in gene LDB1: skipping.
Problem with re-annotating mutations in gene LDB2: skipping.
Problem with re-annotating mutations in gene LDB3: skipping.
Problem with re-annotating mutations in gene LDHA: skipping.
Problem with re-annotating mutations in gene LDHAL6A: skipping.
Problem with re-annotating mutations in gene LDHAL6B: skipping.
Problem with re-annotating mutations in gene LDHB: skipping.
Problem with re-annotating mutations in gene LDHC: skipping.
Problem with re-annotating mutations in gene LDLR: skipping.
Problem with re-annotating mutations in gene LDLRAD1: skipping.
Problem with re-annotating mutations in gene LDLRAD3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene LDOC1: skipping.
Problem with re-annotating mutations in gene LECT1: skipping.
Problem with re-annotating mutations in gene LEF1: skipping.
Problem with re-annotating mutations in gene LEKR1: skipping.
Problem with re-annotating mutations in gene LEMD3: skipping.
Problem with re-annotating mutations in gene LENG1: skipping.
Problem with re-annotating mutations in gene LENG8: skipping.
Problem with re-annotating mutations in gene LEO1: skipping.
Problem with re-annotating mutations in gene LEPR: skipping.
Problem with re-annotating mutations in gene LEPREL1: skipping.
Problem with re-annotating mutations in gene LEPROTL1: skipping.
Problem with re-annotating mutations in gene LETM1: skipping.
Problem with re-annotating mutations in gene LETMD1: skipping.
Problem with re-annotating mutations in gene LGALS12: skipping.
Problem with re-annotating mutations in gene LGALS14: skipping.
Problem with re-annotating mutations in gene LGALS8: skipping.
Problem with re-annotating mutations in gene LGALS9: skipping.
6900/14661 Problem with re-annotating mutations in gene LGI1: skipping.
Problem with re-annotating mutations in gene LGI2: skipping.
Problem with re-annotating mutations in gene LGI3: skipping.
Problem with re-annotating mutations in gene LGMN: skipping.
Problem with re-annotating mutations in gene LGR4: skipping.
Problem with re-annotating mutations in gene LGR5: skipping.
Problem with re-annotating mutations in gene LGSN: skipping.
Problem with re-annotating mutations in gene LHCGR: skipping.
Problem with re-annotating mutations in gene LHFPL2: skipping.
Problem with re-annotating mutations in gene LHFPL5: skipping.
Problem with re-annotating mutations in gene LHPP: skipping.
Problem with re-annotating mutations in gene LHX3: skipping.
Problem with re-annotating mutations in gene LHX6: skipping.
Problem with re-annotating mutations in gene LHX8: skipping.
Problem with re-annotating mutations in gene LHX9: skipping.
Problem with re-annotating mutations in gene LIAS: skipping.
Problem with re-annotating mutations in gene LIFR: skipping.
Problem with re-annotating mutations in gene LIG1: skipping.
Problem with re-annotating mutations in gene LIG3: skipping.
Problem with re-annotating mutations in gene LIG4: skipping.
Problem with re-annotating mutations in gene LILRA1: skipping.
Problem with re-annotating mutations in gene LILRA2: skipping.
Problem with re-annotating mutations in gene LILRA3: skipping.
Problem with re-annotating mutations in gene LILRA4: skipping.
Problem with re-annotating mutations in gene LILRA5: skipping.
Problem with re-annotating mutations in gene LILRB1: skipping.
Problem with re-annotating mutations in gene LILRB2: skipping.
Problem with re-annotating mutations in gene LILRB3: skipping.
Problem with re-annotating mutations in gene LILRB4: skipping.
Problem with re-annotating mutations in gene LILRB5: skipping.
Problem with re-annotating mutations in gene LIMA1: skipping.
Problem with re-annotating mutations in gene LIMCH1: skipping.
Problem with re-annotating mutations in gene LIMK1: skipping.
Problem with re-annotating mutations in gene LIMK2: skipping.
Problem with re-annotating mutations in gene LIMS2: skipping.
Problem with re-annotating mutations in gene LIN7A: skipping.
Problem with re-annotating mutations in gene LIN9: skipping.
Problem with re-annotating mutations in gene LINGO1: skipping.
Problem with re-annotating mutations in gene LINGO2: skipping.
Problem with re-annotating mutations in gene LINGO4: skipping.
Problem with re-annotating mutations in gene LIPC: skipping.
Problem with re-annotating mutations in gene LIPE: skipping.
Problem with re-annotating mutations in gene LIPF: skipping.
Problem with re-annotating mutations in gene LIPG: skipping.
Problem with re-annotating mutations in gene LIPH: skipping.
Problem with re-annotating mutations in gene LIPI: skipping.
Problem with re-annotating mutations in gene LIPJ: skipping.
Problem with re-annotating mutations in gene LIPN: skipping.
Problem with re-annotating mutations in gene LIPT1: skipping.
Problem with re-annotating mutations in gene LIX1: skipping.
Problem with re-annotating mutations in gene LIX1L: skipping.
Problem with re-annotating mutations in gene LLGL2: skipping.
Problem with re-annotating mutations in gene LMAN1: skipping.
Problem with re-annotating mutations in gene LMAN2: skipping.
Problem with re-annotating mutations in gene LMBR1: skipping.
Problem with re-annotating mutations in gene LMBRD1: skipping.
Problem with re-annotating mutations in gene LMBRD2: skipping.
Problem with re-annotating mutations in gene LMCD1: skipping.
Problem with re-annotating mutations in gene LMF1: skipping.
Problem with re-annotating mutations in gene LMLN: skipping.
Problem with re-annotating mutations in gene LMNB1: skipping.
Problem with re-annotating mutations in gene LMO7: skipping.
Problem with re-annotating mutations in gene LMOD1: skipping.
Problem with re-annotating mutations in gene LMOD2: skipping.
Problem with re-annotating mutations in gene LMOD3: skipping.
Problem with re-annotating mutations in gene LMTK2: skipping.
Problem with re-annotating mutations in gene LMX1A: skipping.
Problem with re-annotating mutations in gene LMX1B: skipping.
Problem with re-annotating mutations in gene LNP1: skipping.
Problem with re-annotating mutations in gene LNPEP: skipping.
Problem with re-annotating mutations in gene LNX1: skipping.
7000/14661 Problem with re-annotating mutations in gene LNX2: skipping.
Problem with re-annotating mutations in gene LOC286238: skipping.
Problem with re-annotating mutations in gene LOC642587: skipping.
Problem with re-annotating mutations in gene LOC728819: skipping.
Problem with re-annotating mutations in gene LOC81691: skipping.
Problem with re-annotating mutations in gene LONP1: skipping.
Problem with re-annotating mutations in gene LONP2: skipping.
Problem with re-annotating mutations in gene LONRF1: skipping.
Problem with re-annotating mutations in gene LONRF2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene LONRF3: skipping.
Problem with re-annotating mutations in gene LOXL2: skipping.
Problem with re-annotating mutations in gene LOXL3: skipping.
Problem with re-annotating mutations in gene LOXL4: skipping.
Problem with re-annotating mutations in gene LPA: skipping.
Problem with re-annotating mutations in gene LPAR1: skipping.
Problem with re-annotating mutations in gene LPAR3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene LPAR4: skipping.
Problem with re-annotating mutations in gene LPAR6: skipping.
Problem with re-annotating mutations in gene LPCAT1: skipping.
Problem with re-annotating mutations in gene LPCAT2: skipping.
Problem with re-annotating mutations in gene LPCAT3: skipping.
Problem with re-annotating mutations in gene LPCAT4: skipping.
Problem with re-annotating mutations in gene LPHN1: skipping.
Problem with re-annotating mutations in gene LPHN2: skipping.
Problem with re-annotating mutations in gene LPHN3: skipping.
Problem with re-annotating mutations in gene LPIN1: skipping.
Problem with re-annotating mutations in gene LPIN2: skipping.
Problem with re-annotating mutations in gene LPIN3: skipping.
Problem with re-annotating mutations in gene LPL: skipping.
Problem with re-annotating mutations in gene LPO: skipping.
Problem with re-annotating mutations in gene LPP: skipping.
Problem with re-annotating mutations in gene LPPR3: skipping.
Problem with re-annotating mutations in gene LPPR4: skipping.
Problem with re-annotating mutations in gene LPPR5: skipping.
Problem with re-annotating mutations in gene LPXN: skipping.
Problem with re-annotating mutations in gene LRAT: skipping.
Problem with re-annotating mutations in gene LRBA: skipping.
Problem with re-annotating mutations in gene LRCH1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene LRCH2: skipping.
Problem with re-annotating mutations in gene LRCH3: skipping.
Problem with re-annotating mutations in gene LRCH4: skipping.
Problem with re-annotating mutations in gene LRFN2: skipping.
Problem with re-annotating mutations in gene LRFN5: skipping.
Problem with re-annotating mutations in gene LRGUK: skipping.
Problem with re-annotating mutations in gene LRIG1: skipping.
Problem with re-annotating mutations in gene LRIG2: skipping.
Problem with re-annotating mutations in gene LRIG3: skipping.
Problem with re-annotating mutations in gene LRIT1: skipping.
Problem with re-annotating mutations in gene LRIT2: skipping.
Problem with re-annotating mutations in gene LRIT3: skipping.
Problem with re-annotating mutations in gene LRMP: skipping.
Problem with re-annotating mutations in gene LRP1: skipping.
Problem with re-annotating mutations in gene LRP10: skipping.
Problem with re-annotating mutations in gene LRP12: skipping.
Problem with re-annotating mutations in gene LRP1B: skipping.
Problem with re-annotating mutations in gene LRP2: skipping.
Problem with re-annotating mutations in gene LRP2BP: skipping.
Problem with re-annotating mutations in gene LRP4: skipping.
Problem with re-annotating mutations in gene LRP5: skipping.
Problem with re-annotating mutations in gene LRP6: skipping.
Problem with re-annotating mutations in gene LRP8: skipping.
Problem with re-annotating mutations in gene LRPPRC: skipping.
Problem with re-annotating mutations in gene LRRC1: skipping.
Problem with re-annotating mutations in gene LRRC10: skipping.
Problem with re-annotating mutations in gene LRRC15: skipping.
Problem with re-annotating mutations in gene LRRC16A: skipping.
Problem with re-annotating mutations in gene LRRC16B: skipping.
Problem with re-annotating mutations in gene LRRC17: skipping.
Problem with re-annotating mutations in gene LRRC18: skipping.
Problem with re-annotating mutations in gene LRRC2: skipping.
Problem with re-annotating mutations in gene LRRC20: skipping.
Problem with re-annotating mutations in gene LRRC25: skipping.
Problem with re-annotating mutations in gene LRRC27: skipping.
Problem with re-annotating mutations in gene LRRC28: skipping.
Problem with re-annotating mutations in gene LRRC30: skipping.
Problem with re-annotating mutations in gene LRRC31: skipping.
Problem with re-annotating mutations in gene LRRC32: skipping.
Problem with re-annotating mutations in gene LRRC33: skipping.
Problem with re-annotating mutations in gene LRRC36: skipping.
Problem with re-annotating mutations in gene LRRC37A3: skipping.
Problem with re-annotating mutations in gene LRRC37B: skipping.
Problem with re-annotating mutations in gene LRRC39: skipping.
Problem with re-annotating mutations in gene LRRC4: skipping.
Problem with re-annotating mutations in gene LRRC40: skipping.
Problem with re-annotating mutations in gene LRRC41: skipping.
7100/14661 Problem with re-annotating mutations in gene LRRC43: skipping.
Problem with re-annotating mutations in gene LRRC49: skipping.
Problem with re-annotating mutations in gene LRRC4B: skipping.
Problem with re-annotating mutations in gene LRRC4C: skipping.
Problem with re-annotating mutations in gene LRRC50: skipping.
Problem with re-annotating mutations in gene LRRC52: skipping.
Problem with re-annotating mutations in gene LRRC58: skipping.
Problem with re-annotating mutations in gene LRRC59: skipping.
Problem with re-annotating mutations in gene LRRC66: skipping.
Problem with re-annotating mutations in gene LRRC7: skipping.
Problem with re-annotating mutations in gene LRRC8A: skipping.
Problem with re-annotating mutations in gene LRRC8C: skipping.
Problem with re-annotating mutations in gene LRRC8D: skipping.
Problem with re-annotating mutations in gene LRRC8E: skipping.
Problem with re-annotating mutations in gene LRRCC1: skipping.
Problem with re-annotating mutations in gene LRRFIP1: skipping.
Problem with re-annotating mutations in gene LRRFIP2: skipping.
Problem with re-annotating mutations in gene LRRIQ1: skipping.
Problem with re-annotating mutations in gene LRRIQ3: skipping.
Problem with re-annotating mutations in gene LRRIQ4: skipping.
Problem with re-annotating mutations in gene LRRK1: skipping.
Problem with re-annotating mutations in gene LRRK2: skipping.
Problem with re-annotating mutations in gene LRRN1: skipping.
Problem with re-annotating mutations in gene LRRN3: skipping.
Problem with re-annotating mutations in gene LRRTM1: skipping.
Problem with re-annotating mutations in gene LRRTM2: skipping.
Problem with re-annotating mutations in gene LRRTM3: skipping.
Problem with re-annotating mutations in gene LRRTM4: skipping.
Problem with re-annotating mutations in gene LRTM1: skipping.
Problem with re-annotating mutations in gene LRTOMT: skipping.
Problem with re-annotating mutations in gene LRWD1: skipping.
Problem with re-annotating mutations in gene LSAMP: skipping.
Problem with re-annotating mutations in gene LSG1: skipping.
Problem with re-annotating mutations in gene LSM1: skipping.
Problem with re-annotating mutations in gene LSM11: skipping.
Problem with re-annotating mutations in gene LSM14A: skipping.
Problem with re-annotating mutations in gene LSM3: skipping.
Problem with re-annotating mutations in gene LSS: skipping.
Problem with re-annotating mutations in gene LST-3TM12: skipping.
Problem with re-annotating mutations in gene LTBP1: skipping.
Problem with re-annotating mutations in gene LTBP2: skipping.
Problem with re-annotating mutations in gene LTBP3: skipping.
Problem with re-annotating mutations in gene LTBP4: skipping.
Problem with re-annotating mutations in gene LTBR: skipping.
Problem with re-annotating mutations in gene LTF: skipping.
Problem with re-annotating mutations in gene LTK: skipping.
Problem with re-annotating mutations in gene LTV1: skipping.
Problem with re-annotating mutations in gene LUC7L2: skipping.
Problem with re-annotating mutations in gene LUM: skipping.
Problem with re-annotating mutations in gene LUZP1: skipping.
Problem with re-annotating mutations in gene LUZP2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene LUZP4: skipping.
Problem with re-annotating mutations in gene LY6E: skipping.
Problem with re-annotating mutations in gene LY75: skipping.
Problem with re-annotating mutations in gene LY86: skipping.
Problem with re-annotating mutations in gene LY9: skipping.
Problem with re-annotating mutations in gene LY96: skipping.
Problem with re-annotating mutations in gene LYAR: skipping.
Problem with re-annotating mutations in gene LYG1: skipping.
Problem with re-annotating mutations in gene LYN: skipping.
Problem with re-annotating mutations in gene LYPD3: skipping.
Problem with re-annotating mutations in gene LYPD4: skipping.
Problem with re-annotating mutations in gene LYRM5: skipping.
Problem with re-annotating mutations in gene LYSMD1: skipping.
7200/14661 Problem with re-annotating mutations in gene LYST: skipping.
Problem with re-annotating mutations in gene LZIC: skipping.
Problem with re-annotating mutations in gene LZTFL1: skipping.
Problem with re-annotating mutations in gene LZTR1: skipping.
Problem with re-annotating mutations in gene LZTS1: skipping.
Problem with re-annotating mutations in gene LZTS2: skipping.
Problem with re-annotating mutations in gene M6PR: skipping.
Problem with re-annotating mutations in gene MAB21L1: skipping.
Problem with re-annotating mutations in gene MAB21L2: skipping.
Problem with re-annotating mutations in gene MACC1: skipping.
Problem with re-annotating mutations in gene MACF1: skipping.
Problem with re-annotating mutations in gene MACROD1: skipping.
Problem with re-annotating mutations in gene MACROD2: skipping.
Problem with re-annotating mutations in gene MAD1L1: skipping.
Problem with re-annotating mutations in gene MADD: skipping.
Problem with re-annotating mutations in gene MAEA: skipping.
Problem with re-annotating mutations in gene MAEL: skipping.
Problem with re-annotating mutations in gene MAG: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGEA10: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGEA11: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGEA12: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGEA4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGEA6: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGEA8: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGEB1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGEB18: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGEB2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGEB3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGEB4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGEC1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGEC2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGEC3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGED1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGED2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGEE1: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGEE2: skipping.
Problem with re-annotating mutations in gene MAGEL2: skipping.
Problem with re-annotating mutations in gene MAGI1: skipping.
Problem with re-annotating mutations in gene MAGI2: skipping.
Problem with re-annotating mutations in gene MAGI3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAGT1: skipping.
Problem with re-annotating mutations in gene MAK: skipping.
Problem with re-annotating mutations in gene MALT1: skipping.
Problem with re-annotating mutations in gene MAMDC2: skipping.
Problem with re-annotating mutations in gene MAML1: skipping.
Problem with re-annotating mutations in gene MAML2: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAMLD1: skipping.
Problem with re-annotating mutations in gene MAN1A1: skipping.
Problem with re-annotating mutations in gene MAN1A2: skipping.
Problem with re-annotating mutations in gene MAN1B1: skipping.
Problem with re-annotating mutations in gene MAN1C1: skipping.
Problem with re-annotating mutations in gene MAN2A1: skipping.
Problem with re-annotating mutations in gene MAN2A2: skipping.
Problem with re-annotating mutations in gene MAN2B1: skipping.
Problem with re-annotating mutations in gene MAN2C1: skipping.
Problem with re-annotating mutations in gene MANBA: skipping.
Problem with re-annotating mutations in gene MANSC1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAOA: skipping.
Problem with re-annotating mutations in gene MAP1A: skipping.
Problem with re-annotating mutations in gene MAP1B: skipping.
Problem with re-annotating mutations in gene MAP1LC3B2: skipping.
Problem with re-annotating mutations in gene MAP1S: skipping.
Problem with re-annotating mutations in gene MAP2: skipping.
Problem with re-annotating mutations in gene MAP2K1: skipping.
Problem with re-annotating mutations in gene MAP2K3: skipping.
Problem with re-annotating mutations in gene MAP2K4: skipping.
Problem with re-annotating mutations in gene MAP2K5: skipping.
Problem with re-annotating mutations in gene MAP2K6: skipping.
Problem with re-annotating mutations in gene MAP3K1: skipping.
Problem with re-annotating mutations in gene MAP3K10: skipping.
Problem with re-annotating mutations in gene MAP3K11: skipping.
Problem with re-annotating mutations in gene MAP3K12: skipping.
Problem with re-annotating mutations in gene MAP3K13: skipping.
7300/14661 Problem with re-annotating mutations in gene MAP3K14: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAP3K15: skipping.
Problem with re-annotating mutations in gene MAP3K2: skipping.
Problem with re-annotating mutations in gene MAP3K3: skipping.
Problem with re-annotating mutations in gene MAP3K4: skipping.
Problem with re-annotating mutations in gene MAP3K5: skipping.
Problem with re-annotating mutations in gene MAP3K6: skipping.
Problem with re-annotating mutations in gene MAP3K7: skipping.
Problem with re-annotating mutations in gene MAP3K8: skipping.
Problem with re-annotating mutations in gene MAP3K9: skipping.
Problem with re-annotating mutations in gene MAP4: skipping.
Problem with re-annotating mutations in gene MAP4K1: skipping.
Problem with re-annotating mutations in gene MAP4K3: skipping.
Problem with re-annotating mutations in gene MAP4K4: skipping.
Problem with re-annotating mutations in gene MAP4K5: skipping.
Problem with re-annotating mutations in gene MAP6: skipping.
Problem with re-annotating mutations in gene MAP7: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAP7D2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MAP7D3: skipping.
Problem with re-annotating mutations in gene MAP9: skipping.
Problem with re-annotating mutations in gene MAPK1: skipping.
Problem with re-annotating mutations in gene MAPK10: skipping.
Problem with re-annotating mutations in gene MAPK12: skipping.
Problem with re-annotating mutations in gene MAPK14: skipping.
Problem with re-annotating mutations in gene MAPK3: skipping.
Problem with re-annotating mutations in gene MAPK6: skipping.
Problem with re-annotating mutations in gene MAPK7: skipping.
Problem with re-annotating mutations in gene MAPK8: skipping.
Problem with re-annotating mutations in gene MAPK8IP1: skipping.
Problem with re-annotating mutations in gene MAPK8IP3: skipping.
Problem with re-annotating mutations in gene MAPK9: skipping.
Problem with re-annotating mutations in gene MAPKAP1: skipping.
Problem with re-annotating mutations in gene MAPKAPK2: skipping.
Problem with re-annotating mutations in gene MAPKBP1: skipping.
Problem with re-annotating mutations in gene MAPRE2: skipping.
Problem with re-annotating mutations in gene MAPRE3: skipping.
Problem with re-annotating mutations in gene MAPT: skipping.
Problem with re-annotating mutations in gene MARCH1: skipping.
Problem with re-annotating mutations in gene MARCH10: skipping.
Problem with re-annotating mutations in gene MARCH6: skipping.
Problem with re-annotating mutations in gene MARCH7: skipping.
Problem with re-annotating mutations in gene MARCH8: skipping.
Problem with re-annotating mutations in gene MARCH9: skipping.
Problem with re-annotating mutations in gene MARCKSL1: skipping.
Problem with re-annotating mutations in gene MARCO: skipping.
Problem with re-annotating mutations in gene MARK1: skipping.
Problem with re-annotating mutations in gene MARK2: skipping.
Problem with re-annotating mutations in gene MARK3: skipping.
Problem with re-annotating mutations in gene MARK4: skipping.
Problem with re-annotating mutations in gene MARS: skipping.
WARNING: unknown chromosome(s):
    'chr5_h2_hap1'

Problem with re-annotating mutations in gene MARVELD2: skipping.
Problem with re-annotating mutations in gene MARVELD3: skipping.
Problem with re-annotating mutations in gene MAS1: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene MAS1L: skipping.
Problem with re-annotating mutations in gene MASP1: skipping.
Problem with re-annotating mutations in gene MASP2: skipping.
Problem with re-annotating mutations in gene MAST1: skipping.
Problem with re-annotating mutations in gene MAST2: skipping.
Problem with re-annotating mutations in gene MAST3: skipping.
Problem with re-annotating mutations in gene MAST4: skipping.
Problem with re-annotating mutations in gene MASTL: skipping.
Problem with re-annotating mutations in gene MAT1A: skipping.
Problem with re-annotating mutations in gene MAT2B: skipping.
Problem with re-annotating mutations in gene MATK: skipping.
Problem with re-annotating mutations in gene MATN1: skipping.
Problem with re-annotating mutations in gene MATN2: skipping.
Problem with re-annotating mutations in gene MATN3: skipping.
Problem with re-annotating mutations in gene MATN4: skipping.
Problem with re-annotating mutations in gene MATR3: skipping.
Problem with re-annotating mutations in gene MAVS: skipping.
Problem with re-annotating mutations in gene MBD1: skipping.
Problem with re-annotating mutations in gene MBD2: skipping.
Problem with re-annotating mutations in gene MBD3L1: skipping.
Problem with re-annotating mutations in gene MBD4: skipping.
Problem with re-annotating mutations in gene MBD5: skipping.
Problem with re-annotating mutations in gene MBD6: skipping.
Problem with re-annotating mutations in gene MBLAC1: skipping.
Problem with re-annotating mutations in gene MBNL1: skipping.
Problem with re-annotating mutations in gene MBNL2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MBNL3: skipping.
Problem with re-annotating mutations in gene MBOAT1: skipping.
Problem with re-annotating mutations in gene MBOAT2: skipping.
Problem with re-annotating mutations in gene MBP: skipping.
7400/14661 Problem with re-annotating mutations in gene MBTPS1: skipping.
Problem with re-annotating mutations in gene MC2R: skipping.
Problem with re-annotating mutations in gene MC4R: skipping.
Problem with re-annotating mutations in gene MC5R: skipping.
Problem with re-annotating mutations in gene MCAM: skipping.
Problem with re-annotating mutations in gene MCART1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MCART6: skipping.
Problem with re-annotating mutations in gene MCC: skipping.
Problem with re-annotating mutations in gene MCCC1: skipping.
Problem with re-annotating mutations in gene MCCC2: skipping.
Problem with re-annotating mutations in gene MCEE: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MCF2: skipping.
Problem with re-annotating mutations in gene MCF2L: skipping.
Problem with re-annotating mutations in gene MCF2L2: skipping.
Problem with re-annotating mutations in gene MCHR1: skipping.
Problem with re-annotating mutations in gene MCHR2: skipping.
Problem with re-annotating mutations in gene MCM10: skipping.
Problem with re-annotating mutations in gene MCM3: skipping.
Problem with re-annotating mutations in gene MCM3AP: skipping.
Problem with re-annotating mutations in gene MCM4: skipping.
Problem with re-annotating mutations in gene MCM5: skipping.
Problem with re-annotating mutations in gene MCM6: skipping.
Problem with re-annotating mutations in gene MCM7: skipping.
Problem with re-annotating mutations in gene MCM8: skipping.
Problem with re-annotating mutations in gene MCM9: skipping.
Problem with re-annotating mutations in gene MCOLN1: skipping.
Problem with re-annotating mutations in gene MCOLN2: skipping.
Problem with re-annotating mutations in gene MCOLN3: skipping.
Problem with re-annotating mutations in gene MCPH1: skipping.
Problem with re-annotating mutations in gene MCRS1: skipping.
Problem with re-annotating mutations in gene MCTP1: skipping.
Problem with re-annotating mutations in gene MCTP2: skipping.
Problem with re-annotating mutations in gene MDC1: skipping.
Problem with re-annotating mutations in gene MDGA1: skipping.
Problem with re-annotating mutations in gene MDGA2: skipping.
Problem with re-annotating mutations in gene MDH1B: skipping.
Problem with re-annotating mutations in gene MDM1: skipping.
Problem with re-annotating mutations in gene MDM2: skipping.
Problem with re-annotating mutations in gene MDM4: skipping.
Problem with re-annotating mutations in gene MDN1: skipping.
Problem with re-annotating mutations in gene ME1: skipping.
Problem with re-annotating mutations in gene ME2: skipping.
Problem with re-annotating mutations in gene ME3: skipping.
Problem with re-annotating mutations in gene MEAF6: skipping.
Problem with re-annotating mutations in gene MECOM: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MECP2: skipping.
Problem with re-annotating mutations in gene MED1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MED12: skipping.
Problem with re-annotating mutations in gene MED12L: skipping.
Problem with re-annotating mutations in gene MED13: skipping.
Problem with re-annotating mutations in gene MED13L: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MED14: skipping.
Problem with re-annotating mutations in gene MED23: skipping.
Problem with re-annotating mutations in gene MED24: skipping.
Problem with re-annotating mutations in gene MED27: skipping.
Problem with re-annotating mutations in gene MED4: skipping.
Problem with re-annotating mutations in gene MED8: skipping.
Problem with re-annotating mutations in gene MEF2A: skipping.
Problem with re-annotating mutations in gene MEF2C: skipping.
Problem with re-annotating mutations in gene MEFV: skipping.
Problem with re-annotating mutations in gene MEGF10: skipping.
Problem with re-annotating mutations in gene MEGF11: skipping.
Problem with re-annotating mutations in gene MEGF6: skipping.
Problem with re-annotating mutations in gene MEGF8: skipping.
Problem with re-annotating mutations in gene MEGF9: skipping.
Problem with re-annotating mutations in gene MEI1: skipping.
Problem with re-annotating mutations in gene MEIS1: skipping.
Problem with re-annotating mutations in gene MEIS2: skipping.
Problem with re-annotating mutations in gene MEIS3: skipping.
Problem with re-annotating mutations in gene MELK: skipping.
Problem with re-annotating mutations in gene MEMO1: skipping.
Problem with re-annotating mutations in gene MEN1: skipping.
Problem with re-annotating mutations in gene MEP1A: skipping.
Problem with re-annotating mutations in gene MEP1B: skipping.
Problem with re-annotating mutations in gene MEPCE: skipping.
Problem with re-annotating mutations in gene MEPE: skipping.
Problem with re-annotating mutations in gene MERTK: skipping.
Problem with re-annotating mutations in gene MESDC2: skipping.
Problem with re-annotating mutations in gene MEST: skipping.
7500/14661 Problem with re-annotating mutations in gene MET: skipping.
Problem with re-annotating mutations in gene METT10D: skipping.
Problem with re-annotating mutations in gene METT11D1: skipping.
Problem with re-annotating mutations in gene METTL13: skipping.
Problem with re-annotating mutations in gene METTL14: skipping.
Problem with re-annotating mutations in gene METTL2B: skipping.
Problem with re-annotating mutations in gene METTL3: skipping.
Problem with re-annotating mutations in gene METTL5: skipping.
Problem with re-annotating mutations in gene METTL6: skipping.
Problem with re-annotating mutations in gene METTL7A: skipping.
Problem with re-annotating mutations in gene METTL8: skipping.
Problem with re-annotating mutations in gene MEX3B: skipping.
Problem with re-annotating mutations in gene MEX3C: skipping.
Problem with re-annotating mutations in gene MFAP3L: skipping.
Problem with re-annotating mutations in gene MFAP5: skipping.
Problem with re-annotating mutations in gene MFF: skipping.
Problem with re-annotating mutations in gene MFGE8: skipping.
Problem with re-annotating mutations in gene MFHAS1: skipping.
Problem with re-annotating mutations in gene MFI2: skipping.
Problem with re-annotating mutations in gene MFN1: skipping.
Problem with re-annotating mutations in gene MFN2: skipping.
Problem with re-annotating mutations in gene MFRP: skipping.
Problem with re-annotating mutations in gene MFSD1: skipping.
Problem with re-annotating mutations in gene MFSD11: skipping.
Problem with re-annotating mutations in gene MFSD2A: skipping.
Problem with re-annotating mutations in gene MFSD2B: skipping.
Problem with re-annotating mutations in gene MFSD4: skipping.
Problem with re-annotating mutations in gene MFSD5: skipping.
Problem with re-annotating mutations in gene MFSD6: skipping.
Problem with re-annotating mutations in gene MFSD8: skipping.
Problem with re-annotating mutations in gene MFSD9: skipping.
Problem with re-annotating mutations in gene MGA: skipping.
Problem with re-annotating mutations in gene MGAM: skipping.
Problem with re-annotating mutations in gene MGAT1: skipping.
Problem with re-annotating mutations in gene MGAT3: skipping.
Problem with re-annotating mutations in gene MGAT4A: skipping.
Problem with re-annotating mutations in gene MGAT4C: skipping.
Problem with re-annotating mutations in gene MGAT5: skipping.
Problem with re-annotating mutations in gene MGAT5B: skipping.
Problem with re-annotating mutations in gene MGC26647: skipping.
Problem with re-annotating mutations in gene MGC42105: skipping.
Problem with re-annotating mutations in gene MGEA5: skipping.
Problem with re-annotating mutations in gene MGRN1: skipping.
Problem with re-annotating mutations in gene MGST1: skipping.
Problem with re-annotating mutations in gene MIA2: skipping.
Problem with re-annotating mutations in gene MIA3: skipping.
Problem with re-annotating mutations in gene MIB1: skipping.
Problem with re-annotating mutations in gene MICAL1: skipping.
Problem with re-annotating mutations in gene MICAL2: skipping.
Problem with re-annotating mutations in gene MICAL3: skipping.
Problem with re-annotating mutations in gene MICALCL: skipping.
Problem with re-annotating mutations in gene MICALL1: skipping.
Problem with re-annotating mutations in gene MICB: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MID1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MID1IP1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MID2: skipping.
Problem with re-annotating mutations in gene MIER1: skipping.
Problem with re-annotating mutations in gene MIER2: skipping.
Problem with re-annotating mutations in gene MIER3: skipping.
Problem with re-annotating mutations in gene MIF4GD: skipping.
Problem with re-annotating mutations in gene MIIP: skipping.
Problem with re-annotating mutations in gene MIOS: skipping.
Problem with re-annotating mutations in gene MIP: skipping.
Problem with re-annotating mutations in gene MIPEP: skipping.
Problem with re-annotating mutations in gene MIS12: skipping.
Problem with re-annotating mutations in gene MITD1: skipping.
Problem with re-annotating mutations in gene MITF: skipping.
Problem with re-annotating mutations in gene MKI67: skipping.
Problem with re-annotating mutations in gene MKKS: skipping.
Problem with re-annotating mutations in gene MKL1: skipping.
Problem with re-annotating mutations in gene MKL2: skipping.
Problem with re-annotating mutations in gene MKLN1: skipping.
Problem with re-annotating mutations in gene MKNK2: skipping.
Problem with re-annotating mutations in gene MKRN1: skipping.
Problem with re-annotating mutations in gene MKRN2: skipping.
Problem with re-annotating mutations in gene MKRN3: skipping.
7600/14661 Problem with re-annotating mutations in gene MKX: skipping.
Problem with re-annotating mutations in gene MLC1: skipping.
Problem with re-annotating mutations in gene MLEC: skipping.
Problem with re-annotating mutations in gene MLF1: skipping.
Problem with re-annotating mutations in gene MLF1IP: skipping.
Problem with re-annotating mutations in gene MLF2: skipping.
Problem with re-annotating mutations in gene MLH1: skipping.
Problem with re-annotating mutations in gene MLH3: skipping.
Problem with re-annotating mutations in gene MLKL: skipping.
Problem with re-annotating mutations in gene MLL: skipping.
Problem with re-annotating mutations in gene MLL2: skipping.
Problem with re-annotating mutations in gene MLL3: skipping.
Problem with re-annotating mutations in gene MLL4: skipping.
Problem with re-annotating mutations in gene MLL5: skipping.
Problem with re-annotating mutations in gene MLLT10: skipping.
Problem with re-annotating mutations in gene MLLT11: skipping.
Problem with re-annotating mutations in gene MLLT4: skipping.
Problem with re-annotating mutations in gene MLLT6: skipping.
Problem with re-annotating mutations in gene MLNR: skipping.
Problem with re-annotating mutations in gene MLPH: skipping.
Problem with re-annotating mutations in gene MLST8: skipping.
Problem with re-annotating mutations in gene MLX: skipping.
Problem with re-annotating mutations in gene MMAA: skipping.
Problem with re-annotating mutations in gene MMAB: skipping.
Problem with re-annotating mutations in gene MMD2: skipping.
Problem with re-annotating mutations in gene MME: skipping.
Problem with re-annotating mutations in gene MMP1: skipping.
Problem with re-annotating mutations in gene MMP10: skipping.
Problem with re-annotating mutations in gene MMP11: skipping.
Problem with re-annotating mutations in gene MMP12: skipping.
Problem with re-annotating mutations in gene MMP13: skipping.
Problem with re-annotating mutations in gene MMP14: skipping.
Problem with re-annotating mutations in gene MMP15: skipping.
Problem with re-annotating mutations in gene MMP16: skipping.
Problem with re-annotating mutations in gene MMP19: skipping.
Problem with re-annotating mutations in gene MMP2: skipping.
Problem with re-annotating mutations in gene MMP20: skipping.
Problem with re-annotating mutations in gene MMP21: skipping.
Problem with re-annotating mutations in gene MMP25: skipping.
Problem with re-annotating mutations in gene MMP26: skipping.
Problem with re-annotating mutations in gene MMP27: skipping.
Problem with re-annotating mutations in gene MMP3: skipping.
Problem with re-annotating mutations in gene MMP7: skipping.
Problem with re-annotating mutations in gene MMP8: skipping.
Problem with re-annotating mutations in gene MMP9: skipping.
Problem with re-annotating mutations in gene MMRN1: skipping.
Problem with re-annotating mutations in gene MMRN2: skipping.
Problem with re-annotating mutations in gene MMS19: skipping.
Problem with re-annotating mutations in gene MN1: skipping.
Problem with re-annotating mutations in gene MND1: skipping.
Problem with re-annotating mutations in gene MNDA: skipping.
Problem with re-annotating mutations in gene MNS1: skipping.
Problem with re-annotating mutations in gene MNT: skipping.
Problem with re-annotating mutations in gene MOBKL1A: skipping.
Problem with re-annotating mutations in gene MOBKL2A: skipping.
Problem with re-annotating mutations in gene MOBKL2C: skipping.
Problem with re-annotating mutations in gene MOBKL3: skipping.
Problem with re-annotating mutations in gene MOCOS: skipping.
Problem with re-annotating mutations in gene MOCS3: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene MOG: skipping.
Problem with re-annotating mutations in gene MOGAT3: skipping.
Problem with re-annotating mutations in gene MOGS: skipping.
Problem with re-annotating mutations in gene MON1B: skipping.
Problem with re-annotating mutations in gene MON2: skipping.
Problem with re-annotating mutations in gene MORC1: skipping.
Problem with re-annotating mutations in gene MORC2: skipping.
Problem with re-annotating mutations in gene MORC3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MORC4: skipping.
Problem with re-annotating mutations in gene MORF4L1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MORF4L2: skipping.
Problem with re-annotating mutations in gene MORN5: skipping.
Problem with re-annotating mutations in gene MOS: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MOSPD1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MOSPD2: skipping.
Problem with re-annotating mutations in gene MOV10: skipping.
Problem with re-annotating mutations in gene MOV10L1: skipping.
Problem with re-annotating mutations in gene MOXD1: skipping.
Problem with re-annotating mutations in gene MPDZ: skipping.
Problem with re-annotating mutations in gene MPEG1: skipping.
7700/14661 Problem with re-annotating mutations in gene MPHOSPH10: skipping.
Problem with re-annotating mutations in gene MPHOSPH9: skipping.
Problem with re-annotating mutations in gene MPL: skipping.
Problem with re-annotating mutations in gene MPO: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MPP1: skipping.
Problem with re-annotating mutations in gene MPP2: skipping.
Problem with re-annotating mutations in gene MPP3: skipping.
Problem with re-annotating mutations in gene MPP4: skipping.
Problem with re-annotating mutations in gene MPP5: skipping.
Problem with re-annotating mutations in gene MPP6: skipping.
Problem with re-annotating mutations in gene MPP7: skipping.
Problem with re-annotating mutations in gene MPPED2: skipping.
Problem with re-annotating mutations in gene MPRIP: skipping.
Problem with re-annotating mutations in gene MPZL2: skipping.
Problem with re-annotating mutations in gene MR1: skipping.
Problem with re-annotating mutations in gene MRAP: skipping.
Problem with re-annotating mutations in gene MRAP2: skipping.
Problem with re-annotating mutations in gene MRC2: skipping.
Problem with re-annotating mutations in gene MRE11A: skipping.
Problem with re-annotating mutations in gene MRGPRD: skipping.
Problem with re-annotating mutations in gene MRGPRX1: skipping.
Problem with re-annotating mutations in gene MRGPRX3: skipping.
Problem with re-annotating mutations in gene MRGPRX4: skipping.
Problem with re-annotating mutations in gene MRI1: skipping.
Problem with re-annotating mutations in gene MRM1: skipping.
Problem with re-annotating mutations in gene MRPL1: skipping.
Problem with re-annotating mutations in gene MRPL18: skipping.
Problem with re-annotating mutations in gene MRPL22: skipping.
Problem with re-annotating mutations in gene MRPL32: skipping.
Problem with re-annotating mutations in gene MRPL37: skipping.
Problem with re-annotating mutations in gene MRPL39: skipping.
Problem with re-annotating mutations in gene MRPL4: skipping.
Problem with re-annotating mutations in gene MRPL44: skipping.
Problem with re-annotating mutations in gene MRPL45: skipping.
Problem with re-annotating mutations in gene MRPL46: skipping.
Problem with re-annotating mutations in gene MRPL47: skipping.
Problem with re-annotating mutations in gene MRPL53: skipping.
Problem with re-annotating mutations in gene MRPL9: skipping.
Problem with re-annotating mutations in gene MRPS11: skipping.
Problem with re-annotating mutations in gene MRPS18C: skipping.
Problem with re-annotating mutations in gene MRPS2: skipping.
Problem with re-annotating mutations in gene MRPS22: skipping.
Problem with re-annotating mutations in gene MRPS24: skipping.
Problem with re-annotating mutations in gene MRPS27: skipping.
Problem with re-annotating mutations in gene MRPS30: skipping.
Problem with re-annotating mutations in gene MRPS31: skipping.
Problem with re-annotating mutations in gene MRPS36: skipping.
Problem with re-annotating mutations in gene MRPS5: skipping.
Problem with re-annotating mutations in gene MRPS9: skipping.
Problem with re-annotating mutations in gene MRS2: skipping.
Problem with re-annotating mutations in gene MRVI1: skipping.
Problem with re-annotating mutations in gene MS4A1: skipping.
Problem with re-annotating mutations in gene MS4A10: skipping.
Problem with re-annotating mutations in gene MS4A12: skipping.
Problem with re-annotating mutations in gene MS4A14: skipping.
Problem with re-annotating mutations in gene MS4A15: skipping.
Problem with re-annotating mutations in gene MS4A2: skipping.
Problem with re-annotating mutations in gene MS4A4A: skipping.
Problem with re-annotating mutations in gene MS4A5: skipping.
Problem with re-annotating mutations in gene MS4A7: skipping.
Problem with re-annotating mutations in gene MS4A8B: skipping.
Problem with re-annotating mutations in gene MSC: skipping.
Problem with re-annotating mutations in gene MSH2: skipping.
Problem with re-annotating mutations in gene MSH3: skipping.
Problem with re-annotating mutations in gene MSH4: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene MSH5: skipping.
7800/14661 Problem with re-annotating mutations in gene MSH6: skipping.
Problem with re-annotating mutations in gene MSI2: skipping.
Problem with re-annotating mutations in gene MSL1: skipping.
Problem with re-annotating mutations in gene MSL2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MSL3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MSN: skipping.
Problem with re-annotating mutations in gene MSR1: skipping.
Problem with re-annotating mutations in gene MSRB2: skipping.
Problem with re-annotating mutations in gene MSRB3: skipping.
Problem with re-annotating mutations in gene MTA2: skipping.
Problem with re-annotating mutations in gene MTBP: skipping.
Problem with re-annotating mutations in gene MTDH: skipping.
Problem with re-annotating mutations in gene MTERF: skipping.
Problem with re-annotating mutations in gene MTERFD1: skipping.
Problem with re-annotating mutations in gene MTERFD2: skipping.
Problem with re-annotating mutations in gene MTF1: skipping.
Problem with re-annotating mutations in gene MTF2: skipping.
Problem with re-annotating mutations in gene MTFMT: skipping.
Problem with re-annotating mutations in gene MTFR1: skipping.
Problem with re-annotating mutations in gene MTG1: skipping.
Problem with re-annotating mutations in gene MTHFD1: skipping.
Problem with re-annotating mutations in gene MTHFD1L: skipping.
Problem with re-annotating mutations in gene MTHFR: skipping.
Problem with re-annotating mutations in gene MTHFSD: skipping.
Problem with re-annotating mutations in gene MTIF2: skipping.
Problem with re-annotating mutations in gene MTL5: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MTM1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MTMR1: skipping.
Problem with re-annotating mutations in gene MTMR10: skipping.
Problem with re-annotating mutations in gene MTMR11: skipping.
Problem with re-annotating mutations in gene MTMR12: skipping.
Problem with re-annotating mutations in gene MTMR2: skipping.
Problem with re-annotating mutations in gene MTMR3: skipping.
Problem with re-annotating mutations in gene MTMR4: skipping.
Problem with re-annotating mutations in gene MTMR6: skipping.
Problem with re-annotating mutations in gene MTMR7: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MTMR8: skipping.
Problem with re-annotating mutations in gene MTMR9: skipping.
Problem with re-annotating mutations in gene MTNR1B: skipping.
Problem with re-annotating mutations in gene MTO1: skipping.
Problem with re-annotating mutations in gene MTOR: skipping.
Problem with re-annotating mutations in gene MTPAP: skipping.
Problem with re-annotating mutations in gene MTR: skipping.
Problem with re-annotating mutations in gene MTRF1: skipping.
Problem with re-annotating mutations in gene MTRR: skipping.
Problem with re-annotating mutations in gene MTSS1: skipping.
Problem with re-annotating mutations in gene MTTP: skipping.
Problem with re-annotating mutations in gene MTUS1: skipping.
Problem with re-annotating mutations in gene MTUS2: skipping.
Problem with re-annotating mutations in gene MTX3: skipping.
Problem with re-annotating mutations in gene MUC13: skipping.
Problem with re-annotating mutations in gene MUC15: skipping.
<MUC16 muts: Problem with re-annotating mutations in gene MUC16: skipping.
Problem with re-annotating mutations in gene MUC17: skipping.
Problem with re-annotating mutations in gene MUC2: skipping.
Problem with re-annotating mutations in gene MUC20: skipping.
Problem with re-annotating mutations in gene MUC21: skipping.
Problem with re-annotating mutations in gene MUC4: skipping.
Problem with re-annotating mutations in gene MUC5B: skipping.
Problem with re-annotating mutations in gene MUC6: skipping.
Problem with re-annotating mutations in gene MUC7: skipping.
Problem with re-annotating mutations in gene MUDENG: skipping.
Problem with re-annotating mutations in gene MUL1: skipping.
Problem with re-annotating mutations in gene MUM1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MUM1L1: skipping.
Problem with re-annotating mutations in gene MURC: skipping.
Problem with re-annotating mutations in gene MUSK: skipping.
Problem with re-annotating mutations in gene MUT: skipping.
Problem with re-annotating mutations in gene MUTYH: skipping.
Problem with re-annotating mutations in gene MVP: skipping.
Problem with re-annotating mutations in gene MX1: skipping.
Problem with re-annotating mutations in gene MX2: skipping.
Problem with re-annotating mutations in gene MXD1: skipping.
Problem with re-annotating mutations in gene MXI1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene MXRA5: skipping.
Problem with re-annotating mutations in gene MYADM: skipping.
7900/14661 Problem with re-annotating mutations in gene MYB: skipping.
Problem with re-annotating mutations in gene MYBBP1A: skipping.
Problem with re-annotating mutations in gene MYBL1: skipping.
Problem with re-annotating mutations in gene MYBL2: skipping.
Problem with re-annotating mutations in gene MYBPC1: skipping.
Problem with re-annotating mutations in gene MYBPC2: skipping.
Problem with re-annotating mutations in gene MYBPC3: skipping.
Problem with re-annotating mutations in gene MYBPH: skipping.
Problem with re-annotating mutations in gene MYBPHL: skipping.
Problem with re-annotating mutations in gene MYCBP2: skipping.
Problem with re-annotating mutations in gene MYCBPAP: skipping.
Problem with re-annotating mutations in gene MYCL1: skipping.
Problem with re-annotating mutations in gene MYCN: skipping.
Problem with re-annotating mutations in gene MYCT1: skipping.
Problem with re-annotating mutations in gene MYD88: skipping.
Problem with re-annotating mutations in gene MYEF2: skipping.
Problem with re-annotating mutations in gene MYF5: skipping.
Problem with re-annotating mutations in gene MYF6: skipping.
Problem with re-annotating mutations in gene MYH1: skipping.
Problem with re-annotating mutations in gene MYH10: skipping.
Problem with re-annotating mutations in gene MYH11: skipping.
Problem with re-annotating mutations in gene MYH13: skipping.
Problem with re-annotating mutations in gene MYH14: skipping.
Problem with re-annotating mutations in gene MYH15: skipping.
Problem with re-annotating mutations in gene MYH2: skipping.
Problem with re-annotating mutations in gene MYH3: skipping.
Problem with re-annotating mutations in gene MYH4: skipping.
Problem with re-annotating mutations in gene MYH6: skipping.
Problem with re-annotating mutations in gene MYH7: skipping.
Problem with re-annotating mutations in gene MYH7B: skipping.
Problem with re-annotating mutations in gene MYH8: skipping.
Problem with re-annotating mutations in gene MYH9: skipping.
Problem with re-annotating mutations in gene MYL10: skipping.
Problem with re-annotating mutations in gene MYL6B: skipping.
Problem with re-annotating mutations in gene MYL9: skipping.
Problem with re-annotating mutations in gene MYLK: skipping.
Problem with re-annotating mutations in gene MYLK2: skipping.
Problem with re-annotating mutations in gene MYLK3: skipping.
Problem with re-annotating mutations in gene MYNN: skipping.
Problem with re-annotating mutations in gene MYO10: skipping.
Problem with re-annotating mutations in gene MYO15A: skipping.
Problem with re-annotating mutations in gene MYO16: skipping.
Problem with re-annotating mutations in gene MYO18A: skipping.
Problem with re-annotating mutations in gene MYO18B: skipping.
Problem with re-annotating mutations in gene MYO19: skipping.
Problem with re-annotating mutations in gene MYO1A: skipping.
Problem with re-annotating mutations in gene MYO1B: skipping.
Problem with re-annotating mutations in gene MYO1D: skipping.
Problem with re-annotating mutations in gene MYO1E: skipping.
Problem with re-annotating mutations in gene MYO1F: skipping.
Problem with re-annotating mutations in gene MYO1G: skipping.
Problem with re-annotating mutations in gene MYO1H: skipping.
Problem with re-annotating mutations in gene MYO3A: skipping.
Problem with re-annotating mutations in gene MYO3B: skipping.
Problem with re-annotating mutations in gene MYO5A: skipping.
Problem with re-annotating mutations in gene MYO5B: skipping.
Problem with re-annotating mutations in gene MYO5C: skipping.
Problem with re-annotating mutations in gene MYO6: skipping.
Problem with re-annotating mutations in gene MYO7A: skipping.
Problem with re-annotating mutations in gene MYO7B: skipping.
Problem with re-annotating mutations in gene MYO9A: skipping.
Problem with re-annotating mutations in gene MYO9B: skipping.
Problem with re-annotating mutations in gene MYOC: skipping.
Problem with re-annotating mutations in gene MYOCD: skipping.
Problem with re-annotating mutations in gene MYOF: skipping.
Problem with re-annotating mutations in gene MYOM1: skipping.
Problem with re-annotating mutations in gene MYOM2: skipping.
Problem with re-annotating mutations in gene MYOM3: skipping.
Problem with re-annotating mutations in gene MYOT: skipping.
Problem with re-annotating mutations in gene MYOZ1: skipping.
Problem with re-annotating mutations in gene MYOZ2: skipping.
Problem with re-annotating mutations in gene MYOZ3: skipping.
Problem with re-annotating mutations in gene MYPN: skipping.
Problem with re-annotating mutations in gene MYRIP: skipping.
Problem with re-annotating mutations in gene MYSM1: skipping.
Problem with re-annotating mutations in gene MYST1: skipping.
Problem with re-annotating mutations in gene MYST2: skipping.
Problem with re-annotating mutations in gene MYST3: skipping.
Problem with re-annotating mutations in gene MYST4: skipping.
Problem with re-annotating mutations in gene MYT1: skipping.
Problem with re-annotating mutations in gene MYT1L: skipping.
Problem with re-annotating mutations in gene N4BP1: skipping.
Problem with re-annotating mutations in gene N4BP2: skipping.
Problem with re-annotating mutations in gene N4BP2L1: skipping.
Problem with re-annotating mutations in gene N4BP2L2: skipping.
Problem with re-annotating mutations in gene N6AMT2: skipping.
8000/14661 Problem with re-annotating mutations in gene NAALAD2: skipping.
Problem with re-annotating mutations in gene NAALADL1: skipping.
Problem with re-annotating mutations in gene NAALADL2: skipping.
Problem with re-annotating mutations in gene NAB1: skipping.
Problem with re-annotating mutations in gene NAB2: skipping.
Problem with re-annotating mutations in gene NACA: skipping.
Problem with re-annotating mutations in gene NACC1: skipping.
Problem with re-annotating mutations in gene NADK: skipping.
Problem with re-annotating mutations in gene NADSYN1: skipping.
Problem with re-annotating mutations in gene NAE1: skipping.
Problem with re-annotating mutations in gene NAGK: skipping.
Problem with re-annotating mutations in gene NAGLU: skipping.
Problem with re-annotating mutations in gene NAGPA: skipping.
Problem with re-annotating mutations in gene NAIF1: skipping.
Problem with re-annotating mutations in gene NALCN: skipping.
Problem with re-annotating mutations in gene NANOS2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene NAP1L2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene NAP1L3: skipping.
Problem with re-annotating mutations in gene NAPA: skipping.
Problem with re-annotating mutations in gene NAPEPLD: skipping.
Problem with re-annotating mutations in gene NARF: skipping.
Problem with re-annotating mutations in gene NARS: skipping.
Problem with re-annotating mutations in gene NARS2: skipping.
Problem with re-annotating mutations in gene NAT10: skipping.
Problem with re-annotating mutations in gene NAT9: skipping.
Problem with re-annotating mutations in gene NAV1: skipping.
Problem with re-annotating mutations in gene NAV2: skipping.
Problem with re-annotating mutations in gene NAV3: skipping.
Problem with re-annotating mutations in gene NBAS: skipping.
Problem with re-annotating mutations in gene NBEA: skipping.
Problem with re-annotating mutations in gene NBEAL1: skipping.
Problem with re-annotating mutations in gene NBEAL2: skipping.
Problem with re-annotating mutations in gene NBN: skipping.
Problem with re-annotating mutations in gene NBPF1: skipping.
Problem with re-annotating mutations in gene NBPF15: skipping.
Problem with re-annotating mutations in gene NBPF7: skipping.
Problem with re-annotating mutations in gene NCAM1: skipping.
Problem with re-annotating mutations in gene NCAM2: skipping.
Problem with re-annotating mutations in gene NCAN: skipping.
Problem with re-annotating mutations in gene NCAPD2: skipping.
Problem with re-annotating mutations in gene NCAPD3: skipping.
Problem with re-annotating mutations in gene NCAPG: skipping.
Problem with re-annotating mutations in gene NCAPG2: skipping.
Problem with re-annotating mutations in gene NCAPH: skipping.
Problem with re-annotating mutations in gene NCBP1: skipping.
Problem with re-annotating mutations in gene NCDN: skipping.
Problem with re-annotating mutations in gene NCEH1: skipping.
Problem with re-annotating mutations in gene NCF2: skipping.
Problem with re-annotating mutations in gene NCF4: skipping.
Problem with re-annotating mutations in gene NCKAP1: skipping.
Problem with re-annotating mutations in gene NCKAP1L: skipping.
Problem with re-annotating mutations in gene NCKAP5: skipping.
Problem with re-annotating mutations in gene NCKIPSD: skipping.
Problem with re-annotating mutations in gene NCL: skipping.
Problem with re-annotating mutations in gene NCOA1: skipping.
Problem with re-annotating mutations in gene NCOA2: skipping.
Problem with re-annotating mutations in gene NCOA3: skipping.
Problem with re-annotating mutations in gene NCOA4: skipping.
Problem with re-annotating mutations in gene NCOA5: skipping.
Problem with re-annotating mutations in gene NCOA6: skipping.
Problem with re-annotating mutations in gene NCOA7: skipping.
Problem with re-annotating mutations in gene NCOR1: skipping.
Problem with re-annotating mutations in gene NCOR2: skipping.
Problem with re-annotating mutations in gene NCSTN: skipping.
Problem with re-annotating mutations in gene NDC80: skipping.
Problem with re-annotating mutations in gene NDEL1: skipping.
Problem with re-annotating mutations in gene NDFIP1: skipping.
8100/14661 Problem with re-annotating mutations in gene NDN: skipping.
Problem with re-annotating mutations in gene NDNL2: skipping.
Problem with re-annotating mutations in gene NDRG2: skipping.
Problem with re-annotating mutations in gene NDRG4: skipping.
Problem with re-annotating mutations in gene NDST1: skipping.
Problem with re-annotating mutations in gene NDST2: skipping.
Problem with re-annotating mutations in gene NDST3: skipping.
Problem with re-annotating mutations in gene NDST4: skipping.
Problem with re-annotating mutations in gene NDUFA10: skipping.
Problem with re-annotating mutations in gene NDUFA12: skipping.
Problem with re-annotating mutations in gene NDUFA4: skipping.
Problem with re-annotating mutations in gene NDUFA9: skipping.
Problem with re-annotating mutations in gene NDUFAF4: skipping.
Problem with re-annotating mutations in gene NDUFB9: skipping.
Problem with re-annotating mutations in gene NDUFS1: skipping.
Problem with re-annotating mutations in gene NDUFS2: skipping.
Problem with re-annotating mutations in gene NDUFS3: skipping.
Problem with re-annotating mutations in gene NDUFS5: skipping.
Problem with re-annotating mutations in gene NDUFS6: skipping.
Problem with re-annotating mutations in gene NDUFV1: skipping.
Problem with re-annotating mutations in gene NEB: skipping.
Problem with re-annotating mutations in gene NEBL: skipping.
Problem with re-annotating mutations in gene NECAB2: skipping.
Problem with re-annotating mutations in gene NECAB3: skipping.
Problem with re-annotating mutations in gene NECAP2: skipping.
Problem with re-annotating mutations in gene NEDD1: skipping.
Problem with re-annotating mutations in gene NEDD4: skipping.
Problem with re-annotating mutations in gene NEDD4L: skipping.
Problem with re-annotating mutations in gene NEDD9: skipping.
Problem with re-annotating mutations in gene NEFH: skipping.
Problem with re-annotating mutations in gene NEFL: skipping.
Problem with re-annotating mutations in gene NEFM: skipping.
Problem with re-annotating mutations in gene NEGR1: skipping.
Problem with re-annotating mutations in gene NEIL1: skipping.
Problem with re-annotating mutations in gene NEIL2: skipping.
Problem with re-annotating mutations in gene NEIL3: skipping.
Problem with re-annotating mutations in gene NEK1: skipping.
Problem with re-annotating mutations in gene NEK10: skipping.
Problem with re-annotating mutations in gene NEK11: skipping.
Problem with re-annotating mutations in gene NEK2: skipping.
Problem with re-annotating mutations in gene NEK3: skipping.
Problem with re-annotating mutations in gene NEK4: skipping.
Problem with re-annotating mutations in gene NEK5: skipping.
Problem with re-annotating mutations in gene NEK6: skipping.
Problem with re-annotating mutations in gene NEK7: skipping.
Problem with re-annotating mutations in gene NEK8: skipping.
Problem with re-annotating mutations in gene NEK9: skipping.
Problem with re-annotating mutations in gene NELL1: skipping.
Problem with re-annotating mutations in gene NELL2: skipping.
Problem with re-annotating mutations in gene NENF: skipping.
Problem with re-annotating mutations in gene NEO1: skipping.
Problem with re-annotating mutations in gene NES: skipping.
Problem with re-annotating mutations in gene NET1: skipping.
Problem with re-annotating mutations in gene NETO1: skipping.
Problem with re-annotating mutations in gene NETO2: skipping.
Problem with re-annotating mutations in gene NEURL4: skipping.
Problem with re-annotating mutations in gene NEUROD1: skipping.
Problem with re-annotating mutations in gene NEUROD4: skipping.
Problem with re-annotating mutations in gene NEUROD6: skipping.
Problem with re-annotating mutations in gene NEUROG3: skipping.
Problem with re-annotating mutations in gene NEXN: skipping.
Problem with re-annotating mutations in gene NF1: skipping.
Problem with re-annotating mutations in gene NF2: skipping.
Problem with re-annotating mutations in gene NFASC: skipping.
Problem with re-annotating mutations in gene NFAT5: skipping.
Problem with re-annotating mutations in gene NFATC1: skipping.
Problem with re-annotating mutations in gene NFATC2: skipping.
Problem with re-annotating mutations in gene NFATC3: skipping.
Problem with re-annotating mutations in gene NFATC4: skipping.
Problem with re-annotating mutations in gene NFE2: skipping.
Problem with re-annotating mutations in gene NFE2L1: skipping.
Problem with re-annotating mutations in gene NFE2L2: skipping.
Problem with re-annotating mutations in gene NFE2L3: skipping.
Problem with re-annotating mutations in gene NFIA: skipping.
Problem with re-annotating mutations in gene NFIB: skipping.
8200/14661 Problem with re-annotating mutations in gene NFIC: skipping.
Problem with re-annotating mutations in gene NFIL3: skipping.
Problem with re-annotating mutations in gene NFKB1: skipping.
Problem with re-annotating mutations in gene NFKB2: skipping.
Problem with re-annotating mutations in gene NFKBIE: skipping.
Problem with re-annotating mutations in gene NFKBIZ: skipping.
Problem with re-annotating mutations in gene NFS1: skipping.
Problem with re-annotating mutations in gene NFX1: skipping.
Problem with re-annotating mutations in gene NFXL1: skipping.
Problem with re-annotating mutations in gene NFYA: skipping.
Problem with re-annotating mutations in gene NFYC: skipping.
Problem with re-annotating mutations in gene NGB: skipping.
Problem with re-annotating mutations in gene NGF: skipping.
Problem with re-annotating mutations in gene NGFR: skipping.
Problem with re-annotating mutations in gene NGLY1: skipping.
Problem with re-annotating mutations in gene NGRN: skipping.
Problem with re-annotating mutations in gene NHEDC1: skipping.
Problem with re-annotating mutations in gene NHEJ1: skipping.
Problem with re-annotating mutations in gene NHLRC1: skipping.
Problem with re-annotating mutations in gene NHLRC2: skipping.
Problem with re-annotating mutations in gene NHLRC3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene NHS: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene NHSL2: skipping.
Problem with re-annotating mutations in gene NICN1: skipping.
Problem with re-annotating mutations in gene NID1: skipping.
Problem with re-annotating mutations in gene NID2: skipping.
Problem with re-annotating mutations in gene NIN: skipping.
Problem with re-annotating mutations in gene NINJ1: skipping.
Problem with re-annotating mutations in gene NINJ2: skipping.
Problem with re-annotating mutations in gene NINL: skipping.
Problem with re-annotating mutations in gene NIP7: skipping.
Problem with re-annotating mutations in gene NIPA2: skipping.
Problem with re-annotating mutations in gene NIPAL2: skipping.
Problem with re-annotating mutations in gene NIPAL3: skipping.
Problem with re-annotating mutations in gene NIPBL: skipping.
Problem with re-annotating mutations in gene NIPSNAP1: skipping.
Problem with re-annotating mutations in gene NIPSNAP3A: skipping.
Problem with re-annotating mutations in gene NIT1: skipping.
Problem with re-annotating mutations in gene NIT2: skipping.
Problem with re-annotating mutations in gene NKAIN3: skipping.
Problem with re-annotating mutations in gene NKAPL: skipping.
Problem with re-annotating mutations in gene NKD1: skipping.
Problem with re-annotating mutations in gene NKIRAS2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene NKRF: skipping.
Problem with re-annotating mutations in gene NKTR: skipping.
Problem with re-annotating mutations in gene NKX2-2: skipping.
Problem with re-annotating mutations in gene NKX3-1: skipping.
Problem with re-annotating mutations in gene NKX6-1: skipping.
Problem with re-annotating mutations in gene NLE1: skipping.
Problem with re-annotating mutations in gene NLGN1: skipping.
Problem with re-annotating mutations in gene NLGN2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene NLGN3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene NLGN4X: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene NLGN4Y: skipping.
Problem with re-annotating mutations in gene NLN: skipping.
Problem with re-annotating mutations in gene NLRC4: skipping.
Problem with re-annotating mutations in gene NLRC5: skipping.
Problem with re-annotating mutations in gene NLRP1: skipping.
Problem with re-annotating mutations in gene NLRP10: skipping.
Problem with re-annotating mutations in gene NLRP11: skipping.
Problem with re-annotating mutations in gene NLRP12: skipping.
Problem with re-annotating mutations in gene NLRP13: skipping.
Problem with re-annotating mutations in gene NLRP14: skipping.
Problem with re-annotating mutations in gene NLRP2: skipping.
Problem with re-annotating mutations in gene NLRP3: skipping.
Problem with re-annotating mutations in gene NLRP4: skipping.
Problem with re-annotating mutations in gene NLRP5: skipping.
Problem with re-annotating mutations in gene NLRP7: skipping.
Problem with re-annotating mutations in gene NLRP8: skipping.
Problem with re-annotating mutations in gene NLRP9: skipping.
Problem with re-annotating mutations in gene NLRX1: skipping.
Problem with re-annotating mutations in gene NMD3: skipping.
8300/14661 Problem with re-annotating mutations in gene NME6: skipping.
Problem with re-annotating mutations in gene NME7: skipping.
Problem with re-annotating mutations in gene NMI: skipping.
Problem with re-annotating mutations in gene NMNAT1: skipping.
Problem with re-annotating mutations in gene NMNAT2: skipping.
Problem with re-annotating mutations in gene NMNAT3: skipping.
Problem with re-annotating mutations in gene NMRAL1: skipping.
Problem with re-annotating mutations in gene NMS: skipping.
Problem with re-annotating mutations in gene NMT2: skipping.
Problem with re-annotating mutations in gene NMUR1: skipping.
Problem with re-annotating mutations in gene NMUR2: skipping.
Problem with re-annotating mutations in gene NNMT: skipping.
Problem with re-annotating mutations in gene NNT: skipping.
Problem with re-annotating mutations in gene NOBOX: skipping.
Problem with re-annotating mutations in gene NOC2L: skipping.
Problem with re-annotating mutations in gene NOC3L: skipping.
Problem with re-annotating mutations in gene NOD1: skipping.
Problem with re-annotating mutations in gene NOD2: skipping.
Problem with re-annotating mutations in gene NOL10: skipping.
Problem with re-annotating mutations in gene NOL11: skipping.
Problem with re-annotating mutations in gene NOL4: skipping.
Problem with re-annotating mutations in gene NOL6: skipping.
Problem with re-annotating mutations in gene NOL7: skipping.
Problem with re-annotating mutations in gene NOL8: skipping.
Problem with re-annotating mutations in gene NOL9: skipping.
Problem with re-annotating mutations in gene NOLC1: skipping.
Problem with re-annotating mutations in gene NOM1: skipping.
Problem with re-annotating mutations in gene NOMO1: skipping.
Problem with re-annotating mutations in gene NOMO2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene NONO: skipping.
Problem with re-annotating mutations in gene NOP14: skipping.
Problem with re-annotating mutations in gene NOP2: skipping.
Problem with re-annotating mutations in gene NOP56: skipping.
Problem with re-annotating mutations in gene NOP58: skipping.
Problem with re-annotating mutations in gene NOS1: skipping.
Problem with re-annotating mutations in gene NOS1AP: skipping.
Problem with re-annotating mutations in gene NOS2: skipping.
Problem with re-annotating mutations in gene NOS3: skipping.
Problem with re-annotating mutations in gene NOTCH2: skipping.
Problem with re-annotating mutations in gene NOTCH2NL: skipping.
Problem with re-annotating mutations in gene NOTCH3: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene NOTCH4: skipping.
Problem with re-annotating mutations in gene NOV: skipping.
Problem with re-annotating mutations in gene NOVA1: skipping.
Problem with re-annotating mutations in gene NOVA2: skipping.
Problem with re-annotating mutations in gene NOX3: skipping.
Problem with re-annotating mutations in gene NOX4: skipping.
Problem with re-annotating mutations in gene NPAS2: skipping.
Problem with re-annotating mutations in gene NPAS3: skipping.
Problem with re-annotating mutations in gene NPAS4: skipping.
Problem with re-annotating mutations in gene NPAT: skipping.
Problem with re-annotating mutations in gene NPBWR1: skipping.
Problem with re-annotating mutations in gene NPC1: skipping.
Problem with re-annotating mutations in gene NPC1L1: skipping.
Problem with re-annotating mutations in gene NPEPPS: skipping.
Problem with re-annotating mutations in gene NPFFR2: skipping.
Problem with re-annotating mutations in gene NPHP1: skipping.
Problem with re-annotating mutations in gene NPHP3: skipping.
Problem with re-annotating mutations in gene NPHP4: skipping.
Problem with re-annotating mutations in gene NPHS1: skipping.
Problem with re-annotating mutations in gene NPHS2: skipping.
Problem with re-annotating mutations in gene NPL: skipping.
Problem with re-annotating mutations in gene NPLOC4: skipping.
Problem with re-annotating mutations in gene NPM3: skipping.
Problem with re-annotating mutations in gene NPR1: skipping.
Problem with re-annotating mutations in gene NPR2: skipping.
Problem with re-annotating mutations in gene NPR3: skipping.
Problem with re-annotating mutations in gene NPSR1: skipping.
Problem with re-annotating mutations in gene NPTN: skipping.
Problem with re-annotating mutations in gene NPTX2: skipping.
Problem with re-annotating mutations in gene NPTXR: skipping.
Problem with re-annotating mutations in gene NPVF: skipping.
Problem with re-annotating mutations in gene NPY: skipping.
Problem with re-annotating mutations in gene NPY1R: skipping.
Problem with re-annotating mutations in gene NPY2R: skipping.
Problem with re-annotating mutations in gene NPY5R: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene NR0B1: skipping.
Problem with re-annotating mutations in gene NR1D1: skipping.
Problem with re-annotating mutations in gene NR1D2: skipping.
Problem with re-annotating mutations in gene NR1H3: skipping.
8400/14661 Problem with re-annotating mutations in gene NR1H4: skipping.
Problem with re-annotating mutations in gene NR1I2: skipping.
Problem with re-annotating mutations in gene NR1I3: skipping.
Problem with re-annotating mutations in gene NR2C1: skipping.
Problem with re-annotating mutations in gene NR2C2: skipping.
Problem with re-annotating mutations in gene NR2E1: skipping.
Problem with re-annotating mutations in gene NR2E3: skipping.
Problem with re-annotating mutations in gene NR2F1: skipping.
Problem with re-annotating mutations in gene NR2F2: skipping.
Problem with re-annotating mutations in gene NR3C1: skipping.
Problem with re-annotating mutations in gene NR3C2: skipping.
Problem with re-annotating mutations in gene NR4A1: skipping.
Problem with re-annotating mutations in gene NR4A2: skipping.
Problem with re-annotating mutations in gene NR4A3: skipping.
Problem with re-annotating mutations in gene NR5A2: skipping.
Problem with re-annotating mutations in gene NR6A1: skipping.
Problem with re-annotating mutations in gene NRAP: skipping.
Problem with re-annotating mutations in gene NRAS: skipping.
Problem with re-annotating mutations in gene NRBF2: skipping.
Problem with re-annotating mutations in gene NRBP1: skipping.
Problem with re-annotating mutations in gene NRBP2: skipping.
Problem with re-annotating mutations in gene NRCAM: skipping.
Problem with re-annotating mutations in gene NRD1: skipping.
Problem with re-annotating mutations in gene NRF1: skipping.
Problem with re-annotating mutations in gene NRG1: skipping.
Problem with re-annotating mutations in gene NRG2: skipping.
Problem with re-annotating mutations in gene NRG3: skipping.
Problem with re-annotating mutations in gene NRIP1: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene NRK: skipping.
Problem with re-annotating mutations in gene NRN1L: skipping.
Problem with re-annotating mutations in gene NRP2: skipping.
Problem with re-annotating mutations in gene NRSN1: skipping.
Problem with re-annotating mutations in gene NRXN1: skipping.
Problem with re-annotating mutations in gene NRXN2: skipping.
Problem with re-annotating mutations in gene NRXN3: skipping.
Problem with re-annotating mutations in gene NSD1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene NSDHL: skipping.
Problem with re-annotating mutations in gene NSFL1C: skipping.
Problem with re-annotating mutations in gene NSMAF: skipping.
Problem with re-annotating mutations in gene NSUN2: skipping.
Problem with re-annotating mutations in gene NSUN3: skipping.
Problem with re-annotating mutations in gene NSUN4: skipping.
Problem with re-annotating mutations in gene NSUN6: skipping.
Problem with re-annotating mutations in gene NT5C1B: skipping.
Problem with re-annotating mutations in gene NT5C2: skipping.
Problem with re-annotating mutations in gene NT5C3: skipping.
Problem with re-annotating mutations in gene NT5C3L: skipping.
Problem with re-annotating mutations in gene NT5DC3: skipping.
Problem with re-annotating mutations in gene NT5E: skipping.
Problem with re-annotating mutations in gene NTAN1: skipping.
Problem with re-annotating mutations in gene NTM: skipping.
Problem with re-annotating mutations in gene NTN1: skipping.
Problem with re-annotating mutations in gene NTN4: skipping.
Problem with re-annotating mutations in gene NTNG1: skipping.
Problem with re-annotating mutations in gene NTNG2: skipping.
Problem with re-annotating mutations in gene NTRK1: skipping.
Problem with re-annotating mutations in gene NTRK2: skipping.
Problem with re-annotating mutations in gene NTRK3: skipping.
Problem with re-annotating mutations in gene NTS: skipping.
Problem with re-annotating mutations in gene NTSR2: skipping.
Problem with re-annotating mutations in gene NUAK1: skipping.
Problem with re-annotating mutations in gene NUAK2: skipping.
Problem with re-annotating mutations in gene NUB1: skipping.
Problem with re-annotating mutations in gene NUBP1: skipping.
Problem with re-annotating mutations in gene NUCB1: skipping.
Problem with re-annotating mutations in gene NUCB2: skipping.
Problem with re-annotating mutations in gene NUDCD1: skipping.
Problem with re-annotating mutations in gene NUDT12: skipping.
Problem with re-annotating mutations in gene NUDT13: skipping.
Problem with re-annotating mutations in gene NUDT15: skipping.
Problem with re-annotating mutations in gene NUDT7: skipping.
Problem with re-annotating mutations in gene NUDT9: skipping.
Problem with re-annotating mutations in gene NUF2: skipping.
8500/14661 Problem with re-annotating mutations in gene NUFIP1: skipping.
Problem with re-annotating mutations in gene NUFIP2: skipping.
Problem with re-annotating mutations in gene NUMA1: skipping.
Problem with re-annotating mutations in gene NUMB: skipping.
Problem with re-annotating mutations in gene NUMBL: skipping.
Problem with re-annotating mutations in gene NUP107: skipping.
Problem with re-annotating mutations in gene NUP133: skipping.
Problem with re-annotating mutations in gene NUP153: skipping.
Problem with re-annotating mutations in gene NUP155: skipping.
Problem with re-annotating mutations in gene NUP160: skipping.
Problem with re-annotating mutations in gene NUP188: skipping.
Problem with re-annotating mutations in gene NUP205: skipping.
Problem with re-annotating mutations in gene NUP210: skipping.
Problem with re-annotating mutations in gene NUP210L: skipping.
Problem with re-annotating mutations in gene NUP214: skipping.
Problem with re-annotating mutations in gene NUP35: skipping.
Problem with re-annotating mutations in gene NUP37: skipping.
Problem with re-annotating mutations in gene NUP43: skipping.
Problem with re-annotating mutations in gene NUP54: skipping.
Problem with re-annotating mutations in gene NUP62: skipping.
Problem with re-annotating mutations in gene NUP85: skipping.
Problem with re-annotating mutations in gene NUP88: skipping.
Problem with re-annotating mutations in gene NUP93: skipping.
Problem with re-annotating mutations in gene NUP98: skipping.
Problem with re-annotating mutations in gene NUPL1: skipping.
Problem with re-annotating mutations in gene NUPL2: skipping.
Problem with re-annotating mutations in gene NUS1: skipping.
Problem with re-annotating mutations in gene NVL: skipping.
Problem with re-annotating mutations in gene NWD1: skipping.
Problem with re-annotating mutations in gene NXF1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene NXF3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene NXF5: skipping.
Problem with re-annotating mutations in gene NXN: skipping.
Problem with re-annotating mutations in gene NXPH1: skipping.
Problem with re-annotating mutations in gene NXPH2: skipping.
Problem with re-annotating mutations in gene NXPH3: skipping.
Problem with re-annotating mutations in gene NYNRIN: skipping.
Problem with re-annotating mutations in gene OAS1: skipping.
Problem with re-annotating mutations in gene OAS2: skipping.
Problem with re-annotating mutations in gene OAS3: skipping.
Problem with re-annotating mutations in gene OASL: skipping.
Problem with re-annotating mutations in gene OBFC1: skipping.
Problem with re-annotating mutations in gene OBSCN: skipping.
Problem with re-annotating mutations in gene OBSL1: skipping.
Problem with re-annotating mutations in gene OCA2: skipping.
Problem with re-annotating mutations in gene OCIAD1: skipping.
Problem with re-annotating mutations in gene OCM: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene OCRL: skipping.
Problem with re-annotating mutations in gene ODC1: skipping.
Problem with re-annotating mutations in gene ODF1: skipping.
Problem with re-annotating mutations in gene ODF2: skipping.
Problem with re-annotating mutations in gene ODF2L: skipping.
Problem with re-annotating mutations in gene ODF3: skipping.
Problem with re-annotating mutations in gene ODF4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ODZ1: skipping.
Problem with re-annotating mutations in gene ODZ2: skipping.
Problem with re-annotating mutations in gene ODZ3: skipping.
Problem with re-annotating mutations in gene ODZ4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene OFD1: skipping.
Problem with re-annotating mutations in gene OGDH: skipping.
Problem with re-annotating mutations in gene OGDHL: skipping.
Problem with re-annotating mutations in gene OGFRL1: skipping.
Problem with re-annotating mutations in gene OGN: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene OGT: skipping.
Problem with re-annotating mutations in gene OIT3: skipping.
Problem with re-annotating mutations in gene OLA1: skipping.
Problem with re-annotating mutations in gene OLFM1: skipping.
Problem with re-annotating mutations in gene OLFM2: skipping.
Problem with re-annotating mutations in gene OLFM3: skipping.
Problem with re-annotating mutations in gene OLFM4: skipping.
Problem with re-annotating mutations in gene OLFML1: skipping.
Problem with re-annotating mutations in gene OLFML2A: skipping.
Problem with re-annotating mutations in gene OLFML2B: skipping.
Problem with re-annotating mutations in gene OLFML3: skipping.
Problem with re-annotating mutations in gene OLIG3: skipping.
Problem with re-annotating mutations in gene OLR1: skipping.
Problem with re-annotating mutations in gene OMA1: skipping.
Problem with re-annotating mutations in gene OMD: skipping.
Problem with re-annotating mutations in gene OMG: skipping.
Problem with re-annotating mutations in gene OMP: skipping.
8600/14661 Problem with re-annotating mutations in gene OPA1: skipping.
Problem with re-annotating mutations in gene OPA3: skipping.
Problem with re-annotating mutations in gene OPCML: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene OPHN1: skipping.
Problem with re-annotating mutations in gene OPN1SW: skipping.
Problem with re-annotating mutations in gene OPN4: skipping.
Problem with re-annotating mutations in gene OPN5: skipping.
Problem with re-annotating mutations in gene OPRK1: skipping.
Problem with re-annotating mutations in gene OPRM1: skipping.
Problem with re-annotating mutations in gene OPTC: skipping.
Problem with re-annotating mutations in gene OPTN: skipping.
Problem with re-annotating mutations in gene OR10A2: skipping.
Problem with re-annotating mutations in gene OR10A3: skipping.
Problem with re-annotating mutations in gene OR10A4: skipping.
Problem with re-annotating mutations in gene OR10A6: skipping.
Problem with re-annotating mutations in gene OR10AG1: skipping.
Problem with re-annotating mutations in gene OR10C1: skipping.
Problem with re-annotating mutations in gene OR10G4: skipping.
Problem with re-annotating mutations in gene OR10G7: skipping.
Problem with re-annotating mutations in gene OR10G9: skipping.
Problem with re-annotating mutations in gene OR10H1: skipping.
Problem with re-annotating mutations in gene OR10H2: skipping.
Problem with re-annotating mutations in gene OR10H4: skipping.
Problem with re-annotating mutations in gene OR10H5: skipping.
Problem with re-annotating mutations in gene OR10J1: skipping.
Problem with re-annotating mutations in gene OR10J3: skipping.
Problem with re-annotating mutations in gene OR10J5: skipping.
Problem with re-annotating mutations in gene OR10K2: skipping.
Problem with re-annotating mutations in gene OR10P1: skipping.
Problem with re-annotating mutations in gene OR10Q1: skipping.
Problem with re-annotating mutations in gene OR10R2: skipping.
Problem with re-annotating mutations in gene OR10S1: skipping.
Problem with re-annotating mutations in gene OR10T2: skipping.
Problem with re-annotating mutations in gene OR10W1: skipping.
Problem with re-annotating mutations in gene OR10X1: skipping.
Problem with re-annotating mutations in gene OR10Z1: skipping.
Problem with re-annotating mutations in gene OR11G2: skipping.
Problem with re-annotating mutations in gene OR11H1: skipping.
Problem with re-annotating mutations in gene OR11H4: skipping.
Problem with re-annotating mutations in gene OR11H6: skipping.
Problem with re-annotating mutations in gene OR11L1: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene OR12D2: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene OR12D3: skipping.
Problem with re-annotating mutations in gene OR13A1: skipping.
Problem with re-annotating mutations in gene OR13C2: skipping.
Problem with re-annotating mutations in gene OR13C3: skipping.
Problem with re-annotating mutations in gene OR13C4: skipping.
Problem with re-annotating mutations in gene OR13C5: skipping.
Problem with re-annotating mutations in gene OR13C8: skipping.
Problem with re-annotating mutations in gene OR13C9: skipping.
Problem with re-annotating mutations in gene OR13D1: skipping.
Problem with re-annotating mutations in gene OR13F1: skipping.
Problem with re-annotating mutations in gene OR13G1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene OR13H1: skipping.
Problem with re-annotating mutations in gene OR14A16: skipping.
Problem with re-annotating mutations in gene OR14C36: skipping.
Problem with re-annotating mutations in gene OR14I1: skipping.
Problem with re-annotating mutations in gene OR14J1: skipping.
Problem with re-annotating mutations in gene OR1A1: skipping.
Problem with re-annotating mutations in gene OR1A2: skipping.
Problem with re-annotating mutations in gene OR1B1: skipping.
Problem with re-annotating mutations in gene OR1C1: skipping.
Problem with re-annotating mutations in gene OR1E1: skipping.
Problem with re-annotating mutations in gene OR1F1: skipping.
Problem with re-annotating mutations in gene OR1G1: skipping.
Problem with re-annotating mutations in gene OR1I1: skipping.
Problem with re-annotating mutations in gene OR1J1: skipping.
Problem with re-annotating mutations in gene OR1J2: skipping.
Problem with re-annotating mutations in gene OR1J4: skipping.
Problem with re-annotating mutations in gene OR1K1: skipping.
Problem with re-annotating mutations in gene OR1L1: skipping.
Problem with re-annotating mutations in gene OR1L6: skipping.
Problem with re-annotating mutations in gene OR1L8: skipping.
Problem with re-annotating mutations in gene OR1N2: skipping.
Problem with re-annotating mutations in gene OR1S2: skipping.
Problem with re-annotating mutations in gene OR2A12: skipping.
Problem with re-annotating mutations in gene OR2A14: skipping.
Problem with re-annotating mutations in gene OR2A2: skipping.
Problem with re-annotating mutations in gene OR2A25: skipping.
Problem with re-annotating mutations in gene OR2A5: skipping.
8700/14661 Problem with re-annotating mutations in gene OR2AG1: skipping.
Problem with re-annotating mutations in gene OR2AK2: skipping.
Problem with re-annotating mutations in gene OR2AT4: skipping.
Problem with re-annotating mutations in gene OR2B11: skipping.
Problem with re-annotating mutations in gene OR2B2: skipping.
Problem with re-annotating mutations in gene OR2B6: skipping.
Problem with re-annotating mutations in gene OR2C1: skipping.
Problem with re-annotating mutations in gene OR2C3: skipping.
Problem with re-annotating mutations in gene OR2D2: skipping.
Problem with re-annotating mutations in gene OR2D3: skipping.
Problem with re-annotating mutations in gene OR2F1: skipping.
Problem with re-annotating mutations in gene OR2F2: skipping.
Problem with re-annotating mutations in gene OR2G2: skipping.
Problem with re-annotating mutations in gene OR2G3: skipping.
Problem with re-annotating mutations in gene OR2G6: skipping.
Problem with re-annotating mutations in gene OR2H1: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene OR2H2: skipping.
Problem with re-annotating mutations in gene OR2J3: skipping.
Problem with re-annotating mutations in gene OR2K2: skipping.
Problem with re-annotating mutations in gene OR2L13: skipping.
Problem with re-annotating mutations in gene OR2L2: skipping.
Problem with re-annotating mutations in gene OR2L3: skipping.
Problem with re-annotating mutations in gene OR2L8: skipping.
Problem with re-annotating mutations in gene OR2M2: skipping.
Problem with re-annotating mutations in gene OR2M3: skipping.
Problem with re-annotating mutations in gene OR2M4: skipping.
Problem with re-annotating mutations in gene OR2M5: skipping.
Problem with re-annotating mutations in gene OR2M7: skipping.
Problem with re-annotating mutations in gene OR2T10: skipping.
Problem with re-annotating mutations in gene OR2T11: skipping.
Problem with re-annotating mutations in gene OR2T12: skipping.
Problem with re-annotating mutations in gene OR2T2: skipping.
Problem with re-annotating mutations in gene OR2T27: skipping.
Problem with re-annotating mutations in gene OR2T33: skipping.
Problem with re-annotating mutations in gene OR2T34: skipping.
Problem with re-annotating mutations in gene OR2T4: skipping.
Problem with re-annotating mutations in gene OR2T6: skipping.
Problem with re-annotating mutations in gene OR2T8: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene OR2W1: skipping.
Problem with re-annotating mutations in gene OR2W3: skipping.
Problem with re-annotating mutations in gene OR2W5: skipping.
Problem with re-annotating mutations in gene OR2Y1: skipping.
Problem with re-annotating mutations in gene OR2Z1: skipping.
Problem with re-annotating mutations in gene OR3A1: skipping.
Problem with re-annotating mutations in gene OR3A3: skipping.
Problem with re-annotating mutations in gene OR4A15: skipping.
Problem with re-annotating mutations in gene OR4A16: skipping.
Problem with re-annotating mutations in gene OR4A47: skipping.
Problem with re-annotating mutations in gene OR4A5: skipping.
Problem with re-annotating mutations in gene OR4B1: skipping.
Problem with re-annotating mutations in gene OR4C11: skipping.
Problem with re-annotating mutations in gene OR4C12: skipping.
Problem with re-annotating mutations in gene OR4C13: skipping.
Problem with re-annotating mutations in gene OR4C15: skipping.
Problem with re-annotating mutations in gene OR4C3: skipping.
Problem with re-annotating mutations in gene OR4C46: skipping.
Problem with re-annotating mutations in gene OR4C6: skipping.
Problem with re-annotating mutations in gene OR4D1: skipping.
Problem with re-annotating mutations in gene OR4D10: skipping.
Problem with re-annotating mutations in gene OR4D11: skipping.
Problem with re-annotating mutations in gene OR4D5: skipping.
Problem with re-annotating mutations in gene OR4D6: skipping.
Problem with re-annotating mutations in gene OR4D9: skipping.
Problem with re-annotating mutations in gene OR4F15: skipping.
Problem with re-annotating mutations in gene OR4K1: skipping.
Problem with re-annotating mutations in gene OR4K13: skipping.
Problem with re-annotating mutations in gene OR4K15: skipping.
Problem with re-annotating mutations in gene OR4K17: skipping.
Problem with re-annotating mutations in gene OR4K2: skipping.
Problem with re-annotating mutations in gene OR4K5: skipping.
Problem with re-annotating mutations in gene OR4L1: skipping.
Problem with re-annotating mutations in gene OR4M1: skipping.
Problem with re-annotating mutations in gene OR4M2: skipping.
Problem with re-annotating mutations in gene OR4N2: skipping.
Problem with re-annotating mutations in gene OR4N4: skipping.
Problem with re-annotating mutations in gene OR4P4: skipping.
Problem with re-annotating mutations in gene OR4S1: skipping.
Problem with re-annotating mutations in gene OR4S2: skipping.
Problem with re-annotating mutations in gene OR4X1: skipping.
Problem with re-annotating mutations in gene OR4X2: skipping.
Problem with re-annotating mutations in gene OR51A2: skipping.
Problem with re-annotating mutations in gene OR51A4: skipping.
Problem with re-annotating mutations in gene OR51A7: skipping.
Problem with re-annotating mutations in gene OR51B2: skipping.
Problem with re-annotating mutations in gene OR51B4: skipping.
Problem with re-annotating mutations in gene OR51B5: skipping.
Problem with re-annotating mutations in gene OR51E1: skipping.
Problem with re-annotating mutations in gene OR51E2: skipping.
Problem with re-annotating mutations in gene OR51F1: skipping.
8800/14661 Problem with re-annotating mutations in gene OR51G2: skipping.
Problem with re-annotating mutations in gene OR51I1: skipping.
Problem with re-annotating mutations in gene OR51I2: skipping.
Problem with re-annotating mutations in gene OR51L1: skipping.
Problem with re-annotating mutations in gene OR51M1: skipping.
Problem with re-annotating mutations in gene OR51Q1: skipping.
Problem with re-annotating mutations in gene OR51S1: skipping.
Problem with re-annotating mutations in gene OR51T1: skipping.
Problem with re-annotating mutations in gene OR51V1: skipping.
Problem with re-annotating mutations in gene OR52A1: skipping.
Problem with re-annotating mutations in gene OR52A5: skipping.
Problem with re-annotating mutations in gene OR52B2: skipping.
Problem with re-annotating mutations in gene OR52B4: skipping.
Problem with re-annotating mutations in gene OR52D1: skipping.
Problem with re-annotating mutations in gene OR52E4: skipping.
Problem with re-annotating mutations in gene OR52E6: skipping.
Problem with re-annotating mutations in gene OR52E8: skipping.
Problem with re-annotating mutations in gene OR52H1: skipping.
Problem with re-annotating mutations in gene OR52I1: skipping.
Problem with re-annotating mutations in gene OR52J3: skipping.
Problem with re-annotating mutations in gene OR52K1: skipping.
Problem with re-annotating mutations in gene OR52K2: skipping.
Problem with re-annotating mutations in gene OR52N1: skipping.
Problem with re-annotating mutations in gene OR52N4: skipping.
Problem with re-annotating mutations in gene OR52N5: skipping.
Problem with re-annotating mutations in gene OR52R1: skipping.
Problem with re-annotating mutations in gene OR56A1: skipping.
Problem with re-annotating mutations in gene OR56A3: skipping.
Problem with re-annotating mutations in gene OR56A4: skipping.
Problem with re-annotating mutations in gene OR56B1: skipping.
Problem with re-annotating mutations in gene OR5A2: skipping.
Problem with re-annotating mutations in gene OR5AC2: skipping.
Problem with re-annotating mutations in gene OR5AK2: skipping.
Problem with re-annotating mutations in gene OR5AP2: skipping.
Problem with re-annotating mutations in gene OR5AS1: skipping.
Problem with re-annotating mutations in gene OR5AU1: skipping.
Problem with re-annotating mutations in gene OR5B12: skipping.
Problem with re-annotating mutations in gene OR5B17: skipping.
Problem with re-annotating mutations in gene OR5B2: skipping.
Problem with re-annotating mutations in gene OR5B21: skipping.
Problem with re-annotating mutations in gene OR5B3: skipping.
Problem with re-annotating mutations in gene OR5C1: skipping.
Problem with re-annotating mutations in gene OR5D13: skipping.
Problem with re-annotating mutations in gene OR5D14: skipping.
Problem with re-annotating mutations in gene OR5D16: skipping.
Problem with re-annotating mutations in gene OR5D18: skipping.
Problem with re-annotating mutations in gene OR5F1: skipping.
Problem with re-annotating mutations in gene OR5H1: skipping.
Problem with re-annotating mutations in gene OR5H14: skipping.
Problem with re-annotating mutations in gene OR5H2: skipping.
Problem with re-annotating mutations in gene OR5H6: skipping.
Problem with re-annotating mutations in gene OR5I1: skipping.
Problem with re-annotating mutations in gene OR5K1: skipping.
Problem with re-annotating mutations in gene OR5K3: skipping.
Problem with re-annotating mutations in gene OR5K4: skipping.
Problem with re-annotating mutations in gene OR5L1: skipping.
Problem with re-annotating mutations in gene OR5M1: skipping.
Problem with re-annotating mutations in gene OR5M10: skipping.
Problem with re-annotating mutations in gene OR5M3: skipping.
Problem with re-annotating mutations in gene OR5M8: skipping.
Problem with re-annotating mutations in gene OR5M9: skipping.
Problem with re-annotating mutations in gene OR5P2: skipping.
Problem with re-annotating mutations in gene OR5R1: skipping.
Problem with re-annotating mutations in gene OR5T2: skipping.
Problem with re-annotating mutations in gene OR5T3: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene OR5V1: skipping.
Problem with re-annotating mutations in gene OR5W2: skipping.
Problem with re-annotating mutations in gene OR6A2: skipping.
Problem with re-annotating mutations in gene OR6B2: skipping.
Problem with re-annotating mutations in gene OR6B3: skipping.
Problem with re-annotating mutations in gene OR6C2: skipping.
Problem with re-annotating mutations in gene OR6C3: skipping.
Problem with re-annotating mutations in gene OR6C4: skipping.
Problem with re-annotating mutations in gene OR6C6: skipping.
Problem with re-annotating mutations in gene OR6C65: skipping.
Problem with re-annotating mutations in gene OR6C68: skipping.
Problem with re-annotating mutations in gene OR6C70: skipping.
Problem with re-annotating mutations in gene OR6C74: skipping.
Problem with re-annotating mutations in gene OR6C75: skipping.
Problem with re-annotating mutations in gene OR6C76: skipping.
Problem with re-annotating mutations in gene OR6F1: skipping.
Problem with re-annotating mutations in gene OR6K2: skipping.
Problem with re-annotating mutations in gene OR6K3: skipping.
Problem with re-annotating mutations in gene OR6K6: skipping.
Problem with re-annotating mutations in gene OR6M1: skipping.
8900/14661 Problem with re-annotating mutations in gene OR6N1: skipping.
Problem with re-annotating mutations in gene OR6N2: skipping.
Problem with re-annotating mutations in gene OR6Q1: skipping.
Problem with re-annotating mutations in gene OR6S1: skipping.
Problem with re-annotating mutations in gene OR6T1: skipping.
Problem with re-annotating mutations in gene OR6X1: skipping.
Problem with re-annotating mutations in gene OR6Y1: skipping.
Problem with re-annotating mutations in gene OR7A10: skipping.
Problem with re-annotating mutations in gene OR7A17: skipping.
Problem with re-annotating mutations in gene OR7A5: skipping.
Problem with re-annotating mutations in gene OR7C1: skipping.
Problem with re-annotating mutations in gene OR7D2: skipping.
Problem with re-annotating mutations in gene OR7D4: skipping.
Problem with re-annotating mutations in gene OR7G1: skipping.
Problem with re-annotating mutations in gene OR7G2: skipping.
Problem with re-annotating mutations in gene OR8B2: skipping.
Problem with re-annotating mutations in gene OR8B3: skipping.
Problem with re-annotating mutations in gene OR8B4: skipping.
Problem with re-annotating mutations in gene OR8B8: skipping.
Problem with re-annotating mutations in gene OR8D2: skipping.
Problem with re-annotating mutations in gene OR8H1: skipping.
Problem with re-annotating mutations in gene OR8H3: skipping.
Problem with re-annotating mutations in gene OR8I2: skipping.
Problem with re-annotating mutations in gene OR8J1: skipping.
Problem with re-annotating mutations in gene OR8K1: skipping.
Problem with re-annotating mutations in gene OR8K3: skipping.
Problem with re-annotating mutations in gene OR8K5: skipping.
Problem with re-annotating mutations in gene OR8S1: skipping.
Problem with re-annotating mutations in gene OR9A4: skipping.
Problem with re-annotating mutations in gene OR9G4: skipping.
Problem with re-annotating mutations in gene OR9I1: skipping.
Problem with re-annotating mutations in gene OR9K2: skipping.
Problem with re-annotating mutations in gene OR9Q2: skipping.
Problem with re-annotating mutations in gene ORAI1: skipping.
Problem with re-annotating mutations in gene ORM1: skipping.
Problem with re-annotating mutations in gene OS9: skipping.
Problem with re-annotating mutations in gene OSBP: skipping.
Problem with re-annotating mutations in gene OSBPL10: skipping.
Problem with re-annotating mutations in gene OSBPL11: skipping.
Problem with re-annotating mutations in gene OSBPL1A: skipping.
Problem with re-annotating mutations in gene OSBPL3: skipping.
Problem with re-annotating mutations in gene OSBPL5: skipping.
Problem with re-annotating mutations in gene OSBPL6: skipping.
Problem with re-annotating mutations in gene OSBPL7: skipping.
Problem with re-annotating mutations in gene OSBPL8: skipping.
Problem with re-annotating mutations in gene OSCP1: skipping.
Problem with re-annotating mutations in gene OSGIN2: skipping.
Problem with re-annotating mutations in gene OSMR: skipping.
Problem with re-annotating mutations in gene OSTN: skipping.
Problem with re-annotating mutations in gene OSTalpha: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene OTC: skipping.
Problem with re-annotating mutations in gene OTOA: skipping.
Problem with re-annotating mutations in gene OTOF: skipping.
Problem with re-annotating mutations in gene OTOL1: skipping.
Problem with re-annotating mutations in gene OTOP1: skipping.
Problem with re-annotating mutations in gene OTOP2: skipping.
Problem with re-annotating mutations in gene OTOP3: skipping.
Problem with re-annotating mutations in gene OTP: skipping.
Problem with re-annotating mutations in gene OTUD3: skipping.
Problem with re-annotating mutations in gene OTUD4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene OTUD5: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene OTUD6A: skipping.
Problem with re-annotating mutations in gene OTUD6B: skipping.
Problem with re-annotating mutations in gene OTUD7A: skipping.
Problem with re-annotating mutations in gene OTUD7B: skipping.
Problem with re-annotating mutations in gene OTX1: skipping.
Problem with re-annotating mutations in gene OTX2: skipping.
Problem with re-annotating mutations in gene OVCA2: skipping.
Problem with re-annotating mutations in gene OVCH1: skipping.
Problem with re-annotating mutations in gene OVGP1: skipping.
Problem with re-annotating mutations in gene OXA1L: skipping.
Problem with re-annotating mutations in gene OXCT1: skipping.
9000/14661 Problem with re-annotating mutations in gene OXER1: skipping.
Problem with re-annotating mutations in gene OXNAD1: skipping.
Problem with re-annotating mutations in gene OXR1: skipping.
Problem with re-annotating mutations in gene OXSM: skipping.
Problem with re-annotating mutations in gene OXTR: skipping.
Problem with re-annotating mutations in gene P2RX2: skipping.
Problem with re-annotating mutations in gene P2RX3: skipping.
Problem with re-annotating mutations in gene P2RX4: skipping.
Problem with re-annotating mutations in gene P2RX7: skipping.
Problem with re-annotating mutations in gene P2RY1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene P2RY10: skipping.
Problem with re-annotating mutations in gene P2RY12: skipping.
Problem with re-annotating mutations in gene P2RY13: skipping.
Problem with re-annotating mutations in gene P2RY14: skipping.
Problem with re-annotating mutations in gene P2RY2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene P2RY4: skipping.
Problem with re-annotating mutations in gene P4HA2: skipping.
Problem with re-annotating mutations in gene P4HA3: skipping.
WARNING: unknown chromosome(s):
    'chr17_random'

Problem with re-annotating mutations in gene P4HB: skipping.
Problem with re-annotating mutations in gene PABPC1: skipping.
Problem with re-annotating mutations in gene PABPC1L: skipping.
Problem with re-annotating mutations in gene PABPC3: skipping.
Problem with re-annotating mutations in gene PABPC4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PABPC5: skipping.
Problem with re-annotating mutations in gene PACRG: skipping.
Problem with re-annotating mutations in gene PACS1: skipping.
Problem with re-annotating mutations in gene PACSIN1: skipping.
Problem with re-annotating mutations in gene PACSIN2: skipping.
Problem with re-annotating mutations in gene PADI1: skipping.
Problem with re-annotating mutations in gene PADI3: skipping.
Problem with re-annotating mutations in gene PADI6: skipping.
Problem with re-annotating mutations in gene PAFAH1B1: skipping.
Problem with re-annotating mutations in gene PAFAH1B3: skipping.
Problem with re-annotating mutations in gene PAG1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PAGE2: skipping.
Problem with re-annotating mutations in gene PAH: skipping.
Problem with re-annotating mutations in gene PAIP1: skipping.
Problem with re-annotating mutations in gene PAK1: skipping.
Problem with re-annotating mutations in gene PAK2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PAK3: skipping.
Problem with re-annotating mutations in gene PAK7: skipping.
Problem with re-annotating mutations in gene PALB2: skipping.
Problem with re-annotating mutations in gene PALLD: skipping.
Problem with re-annotating mutations in gene PALM2-AKAP2: skipping.
Problem with re-annotating mutations in gene PALMD: skipping.
Problem with re-annotating mutations in gene PAM: skipping.
Problem with re-annotating mutations in gene PAMR1: skipping.
Problem with re-annotating mutations in gene PAN3: skipping.
Problem with re-annotating mutations in gene PANK1: skipping.
Problem with re-annotating mutations in gene PANK3: skipping.
Problem with re-annotating mutations in gene PANX1: skipping.
Problem with re-annotating mutations in gene PAPD4: skipping.
Problem with re-annotating mutations in gene PAPL: skipping.
Problem with re-annotating mutations in gene PAPLN: skipping.
Problem with re-annotating mutations in gene PAPOLA: skipping.
Problem with re-annotating mutations in gene PAPOLB: skipping.
Problem with re-annotating mutations in gene PAPOLG: skipping.
Problem with re-annotating mutations in gene PAPPA: skipping.
Problem with re-annotating mutations in gene PAPPA2: skipping.
Problem with re-annotating mutations in gene PAPSS1: skipping.
Problem with re-annotating mutations in gene PAPSS2: skipping.
Problem with re-annotating mutations in gene PAQR3: skipping.
Problem with re-annotating mutations in gene PAQR7: skipping.
Problem with re-annotating mutations in gene PAQR9: skipping.
Problem with re-annotating mutations in gene PARD3: skipping.
Problem with re-annotating mutations in gene PARD3B: skipping.
Problem with re-annotating mutations in gene PARD6A: skipping.
Problem with re-annotating mutations in gene PARD6G: skipping.
Problem with re-annotating mutations in gene PARK2: skipping.
9100/14661 Problem with re-annotating mutations in gene PARL: skipping.
Problem with re-annotating mutations in gene PARN: skipping.
Problem with re-annotating mutations in gene PARP1: skipping.
Problem with re-annotating mutations in gene PARP10: skipping.
Problem with re-annotating mutations in gene PARP11: skipping.
Problem with re-annotating mutations in gene PARP12: skipping.
Problem with re-annotating mutations in gene PARP14: skipping.
Problem with re-annotating mutations in gene PARP15: skipping.
Problem with re-annotating mutations in gene PARP2: skipping.
Problem with re-annotating mutations in gene PARP4: skipping.
Problem with re-annotating mutations in gene PARP8: skipping.
Problem with re-annotating mutations in gene PARP9: skipping.
Problem with re-annotating mutations in gene PARVB: skipping.
Problem with re-annotating mutations in gene PARVG: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PASD1: skipping.
Problem with re-annotating mutations in gene PASK: skipping.
Problem with re-annotating mutations in gene PATE2: skipping.
Problem with re-annotating mutations in gene PATZ1: skipping.
Problem with re-annotating mutations in gene PAX2: skipping.
Problem with re-annotating mutations in gene PAX3: skipping.
Problem with re-annotating mutations in gene PAX4: skipping.
Problem with re-annotating mutations in gene PAX6: skipping.
Problem with re-annotating mutations in gene PAX7: skipping.
Problem with re-annotating mutations in gene PAXIP1: skipping.
Problem with re-annotating mutations in gene PBK: skipping.
Problem with re-annotating mutations in gene PBRM1: skipping.
Problem with re-annotating mutations in gene PBX3: skipping.
Problem with re-annotating mutations in gene PBXIP1: skipping.
Problem with re-annotating mutations in gene PC: skipping.
Problem with re-annotating mutations in gene PCBP1: skipping.
Problem with re-annotating mutations in gene PCCA: skipping.
Problem with re-annotating mutations in gene PCCB: skipping.
Problem with re-annotating mutations in gene PCDH1: skipping.
Problem with re-annotating mutations in gene PCDH10: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PCDH11X: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PCDH11Y: skipping.
Problem with re-annotating mutations in gene PCDH12: skipping.
Problem with re-annotating mutations in gene PCDH15: skipping.
Problem with re-annotating mutations in gene PCDH17: skipping.
Problem with re-annotating mutations in gene PCDH18: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PCDH19: skipping.
Problem with re-annotating mutations in gene PCDH20: skipping.
Problem with re-annotating mutations in gene PCDH7: skipping.
Problem with re-annotating mutations in gene PCDH8: skipping.
Problem with re-annotating mutations in gene PCDH9: skipping.
Problem with re-annotating mutations in gene PCDHA1: skipping.
Problem with re-annotating mutations in gene PCDHA10: skipping.
Problem with re-annotating mutations in gene PCDHA11: skipping.
Problem with re-annotating mutations in gene PCDHA12: skipping.
Problem with re-annotating mutations in gene PCDHA13: skipping.
Problem with re-annotating mutations in gene PCDHA2: skipping.
Problem with re-annotating mutations in gene PCDHA3: skipping.
Problem with re-annotating mutations in gene PCDHA4: skipping.
Problem with re-annotating mutations in gene PCDHA5: skipping.
Problem with re-annotating mutations in gene PCDHA6: skipping.
Problem with re-annotating mutations in gene PCDHA7: skipping.
Problem with re-annotating mutations in gene PCDHA8: skipping.
Problem with re-annotating mutations in gene PCDHA9: skipping.
Problem with re-annotating mutations in gene PCDHAC1: skipping.
Problem with re-annotating mutations in gene PCDHAC2: skipping.
Problem with re-annotating mutations in gene PCDHB1: skipping.
Problem with re-annotating mutations in gene PCDHB10: skipping.
Problem with re-annotating mutations in gene PCDHB11: skipping.
Problem with re-annotating mutations in gene PCDHB12: skipping.
Problem with re-annotating mutations in gene PCDHB13: skipping.
Problem with re-annotating mutations in gene PCDHB14: skipping.
Problem with re-annotating mutations in gene PCDHB15: skipping.
Problem with re-annotating mutations in gene PCDHB16: skipping.
Problem with re-annotating mutations in gene PCDHB2: skipping.
Problem with re-annotating mutations in gene PCDHB3: skipping.
Problem with re-annotating mutations in gene PCDHB4: skipping.
Problem with re-annotating mutations in gene PCDHB5: skipping.
Problem with re-annotating mutations in gene PCDHB6: skipping.
Problem with re-annotating mutations in gene PCDHB7: skipping.
Problem with re-annotating mutations in gene PCDHB8: skipping.
Problem with re-annotating mutations in gene PCDHB9: skipping.
Problem with re-annotating mutations in gene PCDHGA1: skipping.
Problem with re-annotating mutations in gene PCDHGA10: skipping.
Problem with re-annotating mutations in gene PCDHGA11: skipping.
Problem with re-annotating mutations in gene PCDHGA12: skipping.
Problem with re-annotating mutations in gene PCDHGA2: skipping.
Problem with re-annotating mutations in gene PCDHGA3: skipping.
Problem with re-annotating mutations in gene PCDHGA4: skipping.
Problem with re-annotating mutations in gene PCDHGA5: skipping.
Problem with re-annotating mutations in gene PCDHGA6: skipping.
Problem with re-annotating mutations in gene PCDHGA7: skipping.
Problem with re-annotating mutations in gene PCDHGA8: skipping.
Problem with re-annotating mutations in gene PCDHGA9: skipping.
Problem with re-annotating mutations in gene PCDHGB1: skipping.
9200/14661 Problem with re-annotating mutations in gene PCDHGB2: skipping.
Problem with re-annotating mutations in gene PCDHGB3: skipping.
Problem with re-annotating mutations in gene PCDHGB4: skipping.
Problem with re-annotating mutations in gene PCDHGB5: skipping.
Problem with re-annotating mutations in gene PCDHGB6: skipping.
Problem with re-annotating mutations in gene PCDHGB7: skipping.
Problem with re-annotating mutations in gene PCDHGC3: skipping.
Problem with re-annotating mutations in gene PCDHGC4: skipping.
Problem with re-annotating mutations in gene PCDHGC5: skipping.
Problem with re-annotating mutations in gene PCDP1: skipping.
Problem with re-annotating mutations in gene PCF11: skipping.
Problem with re-annotating mutations in gene PCGF1: skipping.
Problem with re-annotating mutations in gene PCGF2: skipping.
Problem with re-annotating mutations in gene PCGF3: skipping.
Problem with re-annotating mutations in gene PCGF5: skipping.
Problem with re-annotating mutations in gene PCID2: skipping.
Problem with re-annotating mutations in gene PCIF1: skipping.
Problem with re-annotating mutations in gene PCK1: skipping.
Problem with re-annotating mutations in gene PCK2: skipping.
Problem with re-annotating mutations in gene PCLO: skipping.
Problem with re-annotating mutations in gene PCM1: skipping.
Problem with re-annotating mutations in gene PCMT1: skipping.
Problem with re-annotating mutations in gene PCMTD1: skipping.
Problem with re-annotating mutations in gene PCNA: skipping.
Problem with re-annotating mutations in gene PCNT: skipping.
Problem with re-annotating mutations in gene PCNX: skipping.
Problem with re-annotating mutations in gene PCNXL2: skipping.
Problem with re-annotating mutations in gene PCNXL3: skipping.
Problem with re-annotating mutations in gene PCOLCE: skipping.
Problem with re-annotating mutations in gene PCOLCE2: skipping.
Problem with re-annotating mutations in gene PCSK1: skipping.
Problem with re-annotating mutations in gene PCSK2: skipping.
Problem with re-annotating mutations in gene PCSK5: skipping.
Problem with re-annotating mutations in gene PCSK6: skipping.
Problem with re-annotating mutations in gene PCSK7: skipping.
Problem with re-annotating mutations in gene PCTP: skipping.
Problem with re-annotating mutations in gene PCYOX1: skipping.
Problem with re-annotating mutations in gene PCYOX1L: skipping.
Problem with re-annotating mutations in gene PCYT1A: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PCYT1B: skipping.
Problem with re-annotating mutations in gene PDAP1: skipping.
Problem with re-annotating mutations in gene PDC: skipping.
Problem with re-annotating mutations in gene PDCD11: skipping.
Problem with re-annotating mutations in gene PDCD5: skipping.
Problem with re-annotating mutations in gene PDCD6: skipping.
Problem with re-annotating mutations in gene PDCD6IP: skipping.
Problem with re-annotating mutations in gene PDCL: skipping.
Problem with re-annotating mutations in gene PDCL3: skipping.
Problem with re-annotating mutations in gene PDE10A: skipping.
Problem with re-annotating mutations in gene PDE11A: skipping.
Problem with re-annotating mutations in gene PDE12: skipping.
Problem with re-annotating mutations in gene PDE1A: skipping.
Problem with re-annotating mutations in gene PDE1B: skipping.
Problem with re-annotating mutations in gene PDE1C: skipping.
Problem with re-annotating mutations in gene PDE3A: skipping.
Problem with re-annotating mutations in gene PDE3B: skipping.
Problem with re-annotating mutations in gene PDE4A: skipping.
Problem with re-annotating mutations in gene PDE4B: skipping.
Problem with re-annotating mutations in gene PDE4C: skipping.
Problem with re-annotating mutations in gene PDE4D: skipping.
Problem with re-annotating mutations in gene PDE4DIP: skipping.
Problem with re-annotating mutations in gene PDE5A: skipping.
Problem with re-annotating mutations in gene PDE6A: skipping.
Problem with re-annotating mutations in gene PDE6B: skipping.
Problem with re-annotating mutations in gene PDE6C: skipping.
Problem with re-annotating mutations in gene PDE7A: skipping.
Problem with re-annotating mutations in gene PDE7B: skipping.
Problem with re-annotating mutations in gene PDE8B: skipping.
Problem with re-annotating mutations in gene PDE9A: skipping.
Problem with re-annotating mutations in gene PDGFC: skipping.
Problem with re-annotating mutations in gene PDGFD: skipping.
Problem with re-annotating mutations in gene PDGFRA: skipping.
Problem with re-annotating mutations in gene PDGFRB: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PDHA1: skipping.
Problem with re-annotating mutations in gene PDHA2: skipping.
Problem with re-annotating mutations in gene PDHB: skipping.
Problem with re-annotating mutations in gene PDHX: skipping.
Problem with re-annotating mutations in gene PDIA3: skipping.
Problem with re-annotating mutations in gene PDIA4: skipping.
Problem with re-annotating mutations in gene PDIA5: skipping.
Problem with re-annotating mutations in gene PDIK1L: skipping.
Problem with re-annotating mutations in gene PDILT: skipping.
Problem with re-annotating mutations in gene PDK1: skipping.
Problem with re-annotating mutations in gene PDK2: skipping.
Problem with re-annotating mutations in gene PDK4: skipping.
9300/14661 Problem with re-annotating mutations in gene PDLIM1: skipping.
Problem with re-annotating mutations in gene PDLIM4: skipping.
Problem with re-annotating mutations in gene PDLIM5: skipping.
Problem with re-annotating mutations in gene PDP1: skipping.
Problem with re-annotating mutations in gene PDPR: skipping.
Problem with re-annotating mutations in gene PDS5A: skipping.
Problem with re-annotating mutations in gene PDS5B: skipping.
Problem with re-annotating mutations in gene PDSS1: skipping.
Problem with re-annotating mutations in gene PDSS2: skipping.
Problem with re-annotating mutations in gene PDYN: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PDZD11: skipping.
Problem with re-annotating mutations in gene PDZD2: skipping.
Problem with re-annotating mutations in gene PDZD7: skipping.
Problem with re-annotating mutations in gene PDZD8: skipping.
Problem with re-annotating mutations in gene PDZRN3: skipping.
Problem with re-annotating mutations in gene PDZRN4: skipping.
Problem with re-annotating mutations in gene PEAR1: skipping.
Problem with re-annotating mutations in gene PECAM1: skipping.
Problem with re-annotating mutations in gene PEG3: skipping.
Problem with re-annotating mutations in gene PELI1: skipping.
Problem with re-annotating mutations in gene PELI3: skipping.
Problem with re-annotating mutations in gene PELP1: skipping.
Problem with re-annotating mutations in gene PER2: skipping.
Problem with re-annotating mutations in gene PER3: skipping.
Problem with re-annotating mutations in gene PET112L: skipping.
Problem with re-annotating mutations in gene PEX1: skipping.
Problem with re-annotating mutations in gene PEX11A: skipping.
Problem with re-annotating mutations in gene PEX11B: skipping.
Problem with re-annotating mutations in gene PEX12: skipping.
Problem with re-annotating mutations in gene PEX14: skipping.
Problem with re-annotating mutations in gene PEX19: skipping.
Problem with re-annotating mutations in gene PEX26: skipping.
Problem with re-annotating mutations in gene PEX3: skipping.
Problem with re-annotating mutations in gene PEX5: skipping.
Problem with re-annotating mutations in gene PEX5L: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PFKFB1: skipping.
Problem with re-annotating mutations in gene PFKFB4: skipping.
Problem with re-annotating mutations in gene PFKM: skipping.
Problem with re-annotating mutations in gene PFKP: skipping.
Problem with re-annotating mutations in gene PGA5: skipping.
Problem with re-annotating mutations in gene PGAM1: skipping.
Problem with re-annotating mutations in gene PGAP1: skipping.
Problem with re-annotating mutations in gene PGAP2: skipping.
Problem with re-annotating mutations in gene PGAP3: skipping.
Problem with re-annotating mutations in gene PGBD1: skipping.
Problem with re-annotating mutations in gene PGBD3: skipping.
Problem with re-annotating mutations in gene PGBD4: skipping.
Problem with re-annotating mutations in gene PGBD5: skipping.
Problem with re-annotating mutations in gene PGC: skipping.
Problem with re-annotating mutations in gene PGCP: skipping.
Problem with re-annotating mutations in gene PGF: skipping.
Problem with re-annotating mutations in gene PGGT1B: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PGK1: skipping.
Problem with re-annotating mutations in gene PGK2: skipping.
Problem with re-annotating mutations in gene PGLYRP1: skipping.
Problem with re-annotating mutations in gene PGLYRP2: skipping.
Problem with re-annotating mutations in gene PGLYRP4: skipping.
Problem with re-annotating mutations in gene PGM1: skipping.
Problem with re-annotating mutations in gene PGM2L1: skipping.
Problem with re-annotating mutations in gene PGM3: skipping.
Problem with re-annotating mutations in gene PGM5: skipping.
Problem with re-annotating mutations in gene PGR: skipping.
Problem with re-annotating mutations in gene PHACTR2: skipping.
Problem with re-annotating mutations in gene PHACTR3: skipping.
Problem with re-annotating mutations in gene PHACTR4: skipping.
9400/14661 Problem with re-annotating mutations in gene PHB: skipping.
Problem with re-annotating mutations in gene PHC1: skipping.
Problem with re-annotating mutations in gene PHC2: skipping.
Problem with re-annotating mutations in gene PHC3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PHEX: skipping.
Problem with re-annotating mutations in gene PHF10: skipping.
Problem with re-annotating mutations in gene PHF11: skipping.
Problem with re-annotating mutations in gene PHF12: skipping.
Problem with re-annotating mutations in gene PHF14: skipping.
Problem with re-annotating mutations in gene PHF15: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PHF16: skipping.
Problem with re-annotating mutations in gene PHF17: skipping.
Problem with re-annotating mutations in gene PHF19: skipping.
Problem with re-annotating mutations in gene PHF2: skipping.
Problem with re-annotating mutations in gene PHF20: skipping.
Problem with re-annotating mutations in gene PHF20L1: skipping.
Problem with re-annotating mutations in gene PHF21A: skipping.
Problem with re-annotating mutations in gene PHF23: skipping.
Problem with re-annotating mutations in gene PHF3: skipping.
Problem with re-annotating mutations in gene PHF7: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PHF8: skipping.
Problem with re-annotating mutations in gene PHGDH: skipping.
Problem with re-annotating mutations in gene PHIP: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PHKA1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PHKA2: skipping.
Problem with re-annotating mutations in gene PHKB: skipping.
Problem with re-annotating mutations in gene PHKG2: skipping.
Problem with re-annotating mutations in gene PHLDB1: skipping.
Problem with re-annotating mutations in gene PHLDB2: skipping.
Problem with re-annotating mutations in gene PHLPP1: skipping.
Problem with re-annotating mutations in gene PHLPP2: skipping.
Problem with re-annotating mutations in gene PHOX2B: skipping.
Problem with re-annotating mutations in gene PHTF1: skipping.
Problem with re-annotating mutations in gene PHTF2: skipping.
Problem with re-annotating mutations in gene PHYH: skipping.
Problem with re-annotating mutations in gene PHYHD1: skipping.
Problem with re-annotating mutations in gene PHYHIP: skipping.
Problem with re-annotating mutations in gene PHYHIPL: skipping.
Problem with re-annotating mutations in gene PI15: skipping.
Problem with re-annotating mutations in gene PI4K2A: skipping.
Problem with re-annotating mutations in gene PI4K2B: skipping.
Problem with re-annotating mutations in gene PI4KA: skipping.
Problem with re-annotating mutations in gene PI4KB: skipping.
Problem with re-annotating mutations in gene PIAS1: skipping.
Problem with re-annotating mutations in gene PIAS2: skipping.
Problem with re-annotating mutations in gene PIAS3: skipping.
Problem with re-annotating mutations in gene PICALM: skipping.
Problem with re-annotating mutations in gene PIGB: skipping.
Problem with re-annotating mutations in gene PIGG: skipping.
Problem with re-annotating mutations in gene PIGK: skipping.
Problem with re-annotating mutations in gene PIGM: skipping.
Problem with re-annotating mutations in gene PIGN: skipping.
Problem with re-annotating mutations in gene PIGO: skipping.
Problem with re-annotating mutations in gene PIGR: skipping.
Problem with re-annotating mutations in gene PIGS: skipping.
Problem with re-annotating mutations in gene PIGT: skipping.
Problem with re-annotating mutations in gene PIGV: skipping.
Problem with re-annotating mutations in gene PIGX: skipping.
Problem with re-annotating mutations in gene PIH1D2: skipping.
Problem with re-annotating mutations in gene PIK3C2A: skipping.
Problem with re-annotating mutations in gene PIK3C2B: skipping.
Problem with re-annotating mutations in gene PIK3C2G: skipping.
Problem with re-annotating mutations in gene PIK3C3: skipping.
Problem with re-annotating mutations in gene PIK3CA: skipping.
Problem with re-annotating mutations in gene PIK3CB: skipping.
Problem with re-annotating mutations in gene PIK3CD: skipping.
Problem with re-annotating mutations in gene PIK3CG: skipping.
Problem with re-annotating mutations in gene PIK3R1: skipping.
Problem with re-annotating mutations in gene PIK3R3: skipping.
Problem with re-annotating mutations in gene PIK3R4: skipping.
Problem with re-annotating mutations in gene PIK3R6: skipping.
Problem with re-annotating mutations in gene PIKFYVE: skipping.
Problem with re-annotating mutations in gene PILRA: skipping.
Problem with re-annotating mutations in gene PILRB: skipping.
9500/14661 Problem with re-annotating mutations in gene PINK1: skipping.
Problem with re-annotating mutations in gene PINX1: skipping.
Problem with re-annotating mutations in gene PION: skipping.
Problem with re-annotating mutations in gene PIP: skipping.
Problem with re-annotating mutations in gene PIP4K2A: skipping.
Problem with re-annotating mutations in gene PIP4K2B: skipping.
Problem with re-annotating mutations in gene PIP4K2C: skipping.
Problem with re-annotating mutations in gene PIP5K1A: skipping.
Problem with re-annotating mutations in gene PIP5K1B: skipping.
Problem with re-annotating mutations in gene PIP5K1C: skipping.
Problem with re-annotating mutations in gene PIPOX: skipping.
Problem with re-annotating mutations in gene PISD: skipping.
Problem with re-annotating mutations in gene PITPNB: skipping.
Problem with re-annotating mutations in gene PITPNC1: skipping.
Problem with re-annotating mutations in gene PITPNM2: skipping.
Problem with re-annotating mutations in gene PITPNM3: skipping.
Problem with re-annotating mutations in gene PITRM1: skipping.
Problem with re-annotating mutations in gene PITX2: skipping.
Problem with re-annotating mutations in gene PIWIL1: skipping.
Problem with re-annotating mutations in gene PIWIL2: skipping.
Problem with re-annotating mutations in gene PIWIL3: skipping.
Problem with re-annotating mutations in gene PIWIL4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PJA1: skipping.
Problem with re-annotating mutations in gene PJA2: skipping.
Problem with re-annotating mutations in gene PKD1L1: skipping.
Problem with re-annotating mutations in gene PKD1L2: skipping.
Problem with re-annotating mutations in gene PKD2: skipping.
Problem with re-annotating mutations in gene PKD2L1: skipping.
Problem with re-annotating mutations in gene PKD2L2: skipping.
Problem with re-annotating mutations in gene PKDREJ: skipping.
Problem with re-annotating mutations in gene PKHD1: skipping.
Problem with re-annotating mutations in gene PKHD1L1: skipping.
Problem with re-annotating mutations in gene PKM2: skipping.
Problem with re-annotating mutations in gene PKN1: skipping.
Problem with re-annotating mutations in gene PKN2: skipping.
Problem with re-annotating mutations in gene PKN3: skipping.
Problem with re-annotating mutations in gene PKNOX2: skipping.
Problem with re-annotating mutations in gene PKP1: skipping.
Problem with re-annotating mutations in gene PKP2: skipping.
Problem with re-annotating mutations in gene PKP4: skipping.
Problem with re-annotating mutations in gene PLA1A: skipping.
Problem with re-annotating mutations in gene PLA2G15: skipping.
Problem with re-annotating mutations in gene PLA2G4A: skipping.
Problem with re-annotating mutations in gene PLA2G4C: skipping.
Problem with re-annotating mutations in gene PLA2G4D: skipping.
Problem with re-annotating mutations in gene PLA2G4E: skipping.
Problem with re-annotating mutations in gene PLA2G4F: skipping.
Problem with re-annotating mutations in gene PLA2G6: skipping.
Problem with re-annotating mutations in gene PLA2G7: skipping.
Problem with re-annotating mutations in gene PLA2R1: skipping.
Problem with re-annotating mutations in gene PLAA: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PLAC1: skipping.
Problem with re-annotating mutations in gene PLAC8: skipping.
Problem with re-annotating mutations in gene PLAG1: skipping.
Problem with re-annotating mutations in gene PLAGL1: skipping.
Problem with re-annotating mutations in gene PLAT: skipping.
Problem with re-annotating mutations in gene PLAU: skipping.
Problem with re-annotating mutations in gene PLAUR: skipping.
Problem with re-annotating mutations in gene PLB1: skipping.
Problem with re-annotating mutations in gene PLBD2: skipping.
Problem with re-annotating mutations in gene PLCB1: skipping.
Problem with re-annotating mutations in gene PLCB2: skipping.
Problem with re-annotating mutations in gene PLCB3: skipping.
Problem with re-annotating mutations in gene PLCB4: skipping.
Problem with re-annotating mutations in gene PLCD1: skipping.
Problem with re-annotating mutations in gene PLCD3: skipping.
Problem with re-annotating mutations in gene PLCD4: skipping.
Problem with re-annotating mutations in gene PLCE1: skipping.
Problem with re-annotating mutations in gene PLCG1: skipping.
Problem with re-annotating mutations in gene PLCG2: skipping.
Problem with re-annotating mutations in gene PLCH1: skipping.
Problem with re-annotating mutations in gene PLCL1: skipping.
Problem with re-annotating mutations in gene PLCL2: skipping.
Problem with re-annotating mutations in gene PLCXD2: skipping.
Problem with re-annotating mutations in gene PLCXD3: skipping.
Problem with re-annotating mutations in gene PLCZ1: skipping.
Problem with re-annotating mutations in gene PLD1: skipping.
Problem with re-annotating mutations in gene PLD2: skipping.
Problem with re-annotating mutations in gene PLD3: skipping.
Problem with re-annotating mutations in gene PLD5: skipping.
Problem with re-annotating mutations in gene PLEK: skipping.
9600/14661 Problem with re-annotating mutations in gene PLEKHA1: skipping.
Problem with re-annotating mutations in gene PLEKHA2: skipping.
Problem with re-annotating mutations in gene PLEKHA3: skipping.
Problem with re-annotating mutations in gene PLEKHA4: skipping.
Problem with re-annotating mutations in gene PLEKHA5: skipping.
Problem with re-annotating mutations in gene PLEKHA6: skipping.
Problem with re-annotating mutations in gene PLEKHA7: skipping.
Problem with re-annotating mutations in gene PLEKHA8: skipping.
Problem with re-annotating mutations in gene PLEKHA9: skipping.
Problem with re-annotating mutations in gene PLEKHG1: skipping.
Problem with re-annotating mutations in gene PLEKHG2: skipping.
Problem with re-annotating mutations in gene PLEKHG4: skipping.
Problem with re-annotating mutations in gene PLEKHG4B: skipping.
Problem with re-annotating mutations in gene PLEKHG6: skipping.
Problem with re-annotating mutations in gene PLEKHG7: skipping.
Problem with re-annotating mutations in gene PLEKHH1: skipping.
Problem with re-annotating mutations in gene PLEKHH2: skipping.
Problem with re-annotating mutations in gene PLEKHO1: skipping.
Problem with re-annotating mutations in gene PLEKHO2: skipping.
Problem with re-annotating mutations in gene PLG: skipping.
Problem with re-annotating mutations in gene PLIN1: skipping.
Problem with re-annotating mutations in gene PLIN2: skipping.
Problem with re-annotating mutations in gene PLIN4: skipping.
Problem with re-annotating mutations in gene PLK1: skipping.
Problem with re-annotating mutations in gene PLK1S1: skipping.
Problem with re-annotating mutations in gene PLK2: skipping.
Problem with re-annotating mutations in gene PLK3: skipping.
Problem with re-annotating mutations in gene PLK4: skipping.
Problem with re-annotating mutations in gene PLOD1: skipping.
Problem with re-annotating mutations in gene PLOD2: skipping.
Problem with re-annotating mutations in gene PLOD3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PLP1: skipping.
Problem with re-annotating mutations in gene PLRG1: skipping.
Problem with re-annotating mutations in gene PLS1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PLS3: skipping.
Problem with re-annotating mutations in gene PLSCR1: skipping.
Problem with re-annotating mutations in gene PLSCR2: skipping.
Problem with re-annotating mutations in gene PLSCR3: skipping.
Problem with re-annotating mutations in gene PLSCR4: skipping.
Problem with re-annotating mutations in gene PLTP: skipping.
Problem with re-annotating mutations in gene PLUNC: skipping.
Problem with re-annotating mutations in gene PLXDC1: skipping.
Problem with re-annotating mutations in gene PLXDC2: skipping.
Problem with re-annotating mutations in gene PLXNA1: skipping.
Problem with re-annotating mutations in gene PLXNA2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PLXNA3: skipping.
Problem with re-annotating mutations in gene PLXNA4: skipping.
Problem with re-annotating mutations in gene PLXNB1: skipping.
Problem with re-annotating mutations in gene PLXNB2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PLXNB3: skipping.
Problem with re-annotating mutations in gene PLXNC1: skipping.
Problem with re-annotating mutations in gene PLXND1: skipping.
Problem with re-annotating mutations in gene PM20D1: skipping.
Problem with re-annotating mutations in gene PM20D2: skipping.
Problem with re-annotating mutations in gene PMF1: skipping.
Problem with re-annotating mutations in gene PMFBP1: skipping.
Problem with re-annotating mutations in gene PML: skipping.
Problem with re-annotating mutations in gene PMM1: skipping.
Problem with re-annotating mutations in gene PMP22: skipping.
Problem with re-annotating mutations in gene PMS1: skipping.
Problem with re-annotating mutations in gene PMS2: skipping.
Problem with re-annotating mutations in gene PNLDC1: skipping.
Problem with re-annotating mutations in gene PNLIP: skipping.
Problem with re-annotating mutations in gene PNLIPRP1: skipping.
Problem with re-annotating mutations in gene PNLIPRP2: skipping.
Problem with re-annotating mutations in gene PNLIPRP3: skipping.
Problem with re-annotating mutations in gene PNMA2: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PNMA3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PNMA5: skipping.
Problem with re-annotating mutations in gene PNMAL1: skipping.
Problem with re-annotating mutations in gene PNMAL2: skipping.
Problem with re-annotating mutations in gene PNN: skipping.
Problem with re-annotating mutations in gene PNPLA1: skipping.
Problem with re-annotating mutations in gene PNPLA3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PNPLA4: skipping.
Problem with re-annotating mutations in gene PNPLA5: skipping.
Problem with re-annotating mutations in gene PNPLA6: skipping.
Problem with re-annotating mutations in gene PNPLA7: skipping.
9700/14661 Problem with re-annotating mutations in gene PNPLA8: skipping.
Problem with re-annotating mutations in gene PNPT1: skipping.
Problem with re-annotating mutations in gene PODNL1: skipping.
Problem with re-annotating mutations in gene PODXL: skipping.
Problem with re-annotating mutations in gene PODXL2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene POF1B: skipping.
Problem with re-annotating mutations in gene POGK: skipping.
Problem with re-annotating mutations in gene POGZ: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene POLA1: skipping.
Problem with re-annotating mutations in gene POLA2: skipping.
Problem with re-annotating mutations in gene POLB: skipping.
Problem with re-annotating mutations in gene POLD1: skipping.
Problem with re-annotating mutations in gene POLD3: skipping.
Problem with re-annotating mutations in gene POLDIP3: skipping.
Problem with re-annotating mutations in gene POLE: skipping.
Problem with re-annotating mutations in gene POLG: skipping.
Problem with re-annotating mutations in gene POLH: skipping.
Problem with re-annotating mutations in gene POLI: skipping.
Problem with re-annotating mutations in gene POLK: skipping.
Problem with re-annotating mutations in gene POLM: skipping.
Problem with re-annotating mutations in gene POLN: skipping.
Problem with re-annotating mutations in gene POLQ: skipping.
Problem with re-annotating mutations in gene POLR1A: skipping.
Problem with re-annotating mutations in gene POLR1B: skipping.
Problem with re-annotating mutations in gene POLR1C: skipping.
Problem with re-annotating mutations in gene POLR1D: skipping.
Problem with re-annotating mutations in gene POLR1E: skipping.
Problem with re-annotating mutations in gene POLR2A: skipping.
Problem with re-annotating mutations in gene POLR2B: skipping.
Problem with re-annotating mutations in gene POLR3A: skipping.
Problem with re-annotating mutations in gene POLR3B: skipping.
Problem with re-annotating mutations in gene POLR3C: skipping.
Problem with re-annotating mutations in gene POLR3D: skipping.
Problem with re-annotating mutations in gene POLR3E: skipping.
Problem with re-annotating mutations in gene POM121: skipping.
Problem with re-annotating mutations in gene POM121L12: skipping.
Problem with re-annotating mutations in gene POMC: skipping.
Problem with re-annotating mutations in gene POMGNT1: skipping.
Problem with re-annotating mutations in gene POMT1: skipping.
Problem with re-annotating mutations in gene PON1: skipping.
Problem with re-annotating mutations in gene PON2: skipping.
Problem with re-annotating mutations in gene PON3: skipping.
Problem with re-annotating mutations in gene POP1: skipping.
Problem with re-annotating mutations in gene POP5: skipping.
Problem with re-annotating mutations in gene POPDC3: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PORCN: skipping.
Problem with re-annotating mutations in gene POSTN: skipping.
Problem with re-annotating mutations in gene POT1: skipping.
Problem with re-annotating mutations in gene POTEA: skipping.
Problem with re-annotating mutations in gene POTEB: skipping.
Problem with re-annotating mutations in gene POTED: skipping.
Problem with re-annotating mutations in gene POTEE: skipping.
Problem with re-annotating mutations in gene POTEF: skipping.
Problem with re-annotating mutations in gene POTEG: skipping.
Problem with re-annotating mutations in gene POU1F1: skipping.
Problem with re-annotating mutations in gene POU2F2: skipping.
Problem with re-annotating mutations in gene POU2F3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene POU3F4: skipping.
Problem with re-annotating mutations in gene POU4F1: skipping.
Problem with re-annotating mutations in gene POU4F2: skipping.
Problem with re-annotating mutations in gene POU4F3: skipping.
Problem with re-annotating mutations in gene POU5F2: skipping.
Problem with re-annotating mutations in gene POU6F1: skipping.
Problem with re-annotating mutations in gene POU6F2: skipping.
Problem with re-annotating mutations in gene PPA1: skipping.
Problem with re-annotating mutations in gene PPA2: skipping.
Problem with re-annotating mutations in gene PPAPDC1A: skipping.
Problem with re-annotating mutations in gene PPAPDC2: skipping.
9800/14661 Problem with re-annotating mutations in gene PPARD: skipping.
Problem with re-annotating mutations in gene PPARGC1A: skipping.
Problem with re-annotating mutations in gene PPAT: skipping.
Problem with re-annotating mutations in gene PPCS: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PPEF1: skipping.
Problem with re-annotating mutations in gene PPEF2: skipping.
Problem with re-annotating mutations in gene PPFIA1: skipping.
Problem with re-annotating mutations in gene PPFIA2: skipping.
Problem with re-annotating mutations in gene PPFIA4: skipping.
Problem with re-annotating mutations in gene PPFIBP1: skipping.
Problem with re-annotating mutations in gene PPFIBP2: skipping.
Problem with re-annotating mutations in gene PPHLN1: skipping.
Problem with re-annotating mutations in gene PPID: skipping.
Problem with re-annotating mutations in gene PPIG: skipping.
Problem with re-annotating mutations in gene PPIL6: skipping.
Problem with re-annotating mutations in gene PPL: skipping.
Problem with re-annotating mutations in gene PPM1A: skipping.
Problem with re-annotating mutations in gene PPM1B: skipping.
Problem with re-annotating mutations in gene PPM1D: skipping.
Problem with re-annotating mutations in gene PPM1E: skipping.
Problem with re-annotating mutations in gene PPM1H: skipping.
Problem with re-annotating mutations in gene PPM1K: skipping.
Problem with re-annotating mutations in gene PPM1L: skipping.
Problem with re-annotating mutations in gene PPME1: skipping.
Problem with re-annotating mutations in gene PPOX: skipping.
Problem with re-annotating mutations in gene PPP1CB: skipping.
Problem with re-annotating mutations in gene PPP1CC: skipping.
Problem with re-annotating mutations in gene PPP1R12A: skipping.
Problem with re-annotating mutations in gene PPP1R12B: skipping.
Problem with re-annotating mutations in gene PPP1R12C: skipping.
Problem with re-annotating mutations in gene PPP1R13B: skipping.
Problem with re-annotating mutations in gene PPP1R14D: skipping.
Problem with re-annotating mutations in gene PPP1R15A: skipping.
Problem with re-annotating mutations in gene PPP1R15B: skipping.
Problem with re-annotating mutations in gene PPP1R16B: skipping.
Problem with re-annotating mutations in gene PPP1R1C: skipping.
Problem with re-annotating mutations in gene PPP1R3A: skipping.
Problem with re-annotating mutations in gene PPP1R3C: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PPP1R3F: skipping.
Problem with re-annotating mutations in gene PPP1R7: skipping.
Problem with re-annotating mutations in gene PPP1R9A: skipping.
Problem with re-annotating mutations in gene PPP2CB: skipping.
Problem with re-annotating mutations in gene PPP2R1A: skipping.
Problem with re-annotating mutations in gene PPP2R1B: skipping.
Problem with re-annotating mutations in gene PPP2R2B: skipping.
Problem with re-annotating mutations in gene PPP2R2C: skipping.
Problem with re-annotating mutations in gene PPP2R2D: skipping.
Problem with re-annotating mutations in gene PPP2R3A: skipping.
Problem with re-annotating mutations in gene PPP2R3C: skipping.
Problem with re-annotating mutations in gene PPP2R5A: skipping.
Problem with re-annotating mutations in gene PPP2R5B: skipping.
Problem with re-annotating mutations in gene PPP2R5C: skipping.
Problem with re-annotating mutations in gene PPP2R5E: skipping.
Problem with re-annotating mutations in gene PPP3CA: skipping.
Problem with re-annotating mutations in gene PPP3CB: skipping.
Problem with re-annotating mutations in gene PPP3CC: skipping.
Problem with re-annotating mutations in gene PPP4R1: skipping.
Problem with re-annotating mutations in gene PPP4R4: skipping.
Problem with re-annotating mutations in gene PPP5C: skipping.
Problem with re-annotating mutations in gene PPP6C: skipping.
Problem with re-annotating mutations in gene PPPDE1: skipping.
Problem with re-annotating mutations in gene PPRC1: skipping.
Problem with re-annotating mutations in gene PPT2: skipping.
Problem with re-annotating mutations in gene PPWD1: skipping.
Problem with re-annotating mutations in gene PPYR1: skipping.
Problem with re-annotating mutations in gene PQLC2: skipping.
Problem with re-annotating mutations in gene PRAM1: skipping.
9900/14661 Problem with re-annotating mutations in gene PRAME: skipping.
Problem with re-annotating mutations in gene PRAMEF1: skipping.
Problem with re-annotating mutations in gene PRAMEF10: skipping.
Problem with re-annotating mutations in gene PRAMEF12: skipping.
Problem with re-annotating mutations in gene PRAMEF4: skipping.
Problem with re-annotating mutations in gene PRB4: skipping.
Problem with re-annotating mutations in gene PRC1: skipping.
Problem with re-annotating mutations in gene PRCP: skipping.
Problem with re-annotating mutations in gene PRDM1: skipping.
Problem with re-annotating mutations in gene PRDM10: skipping.
Problem with re-annotating mutations in gene PRDM11: skipping.
Problem with re-annotating mutations in gene PRDM12: skipping.
Problem with re-annotating mutations in gene PRDM13: skipping.
Problem with re-annotating mutations in gene PRDM14: skipping.
Problem with re-annotating mutations in gene PRDM15: skipping.
Problem with re-annotating mutations in gene PRDM16: skipping.
Problem with re-annotating mutations in gene PRDM2: skipping.
Problem with re-annotating mutations in gene PRDM4: skipping.
Problem with re-annotating mutations in gene PRDM5: skipping.
Problem with re-annotating mutations in gene PRDM7: skipping.
Problem with re-annotating mutations in gene PRDM9: skipping.
Problem with re-annotating mutations in gene PRDX6: skipping.
Problem with re-annotating mutations in gene PREB: skipping.
Problem with re-annotating mutations in gene PRELP: skipping.
Problem with re-annotating mutations in gene PREP: skipping.
Problem with re-annotating mutations in gene PREPL: skipping.
Problem with re-annotating mutations in gene PREX1: skipping.
Problem with re-annotating mutations in gene PREX2: skipping.
Problem with re-annotating mutations in gene PRG2: skipping.
Problem with re-annotating mutations in gene PRG4: skipping.
Problem with re-annotating mutations in gene PRICKLE1: skipping.
Problem with re-annotating mutations in gene PRICKLE2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PRICKLE3: skipping.
Problem with re-annotating mutations in gene PRIM2: skipping.
Problem with re-annotating mutations in gene PRKAA1: skipping.
Problem with re-annotating mutations in gene PRKAA2: skipping.
Problem with re-annotating mutations in gene PRKAB1: skipping.
Problem with re-annotating mutations in gene PRKACG: skipping.
Problem with re-annotating mutations in gene PRKAG2: skipping.
Problem with re-annotating mutations in gene PRKAG3: skipping.
Problem with re-annotating mutations in gene PRKAR1A: skipping.
Problem with re-annotating mutations in gene PRKAR2B: skipping.
Problem with re-annotating mutations in gene PRKCA: skipping.
Problem with re-annotating mutations in gene PRKCB: skipping.
Problem with re-annotating mutations in gene PRKCD: skipping.
Problem with re-annotating mutations in gene PRKCDBP: skipping.
Problem with re-annotating mutations in gene PRKCE: skipping.
Problem with re-annotating mutations in gene PRKCG: skipping.
Problem with re-annotating mutations in gene PRKCH: skipping.
Problem with re-annotating mutations in gene PRKCI: skipping.
Problem with re-annotating mutations in gene PRKCQ: skipping.
Problem with re-annotating mutations in gene PRKD1: skipping.
Problem with re-annotating mutations in gene PRKD2: skipping.
Problem with re-annotating mutations in gene PRKD3: skipping.
Problem with re-annotating mutations in gene PRKDC: skipping.
Problem with re-annotating mutations in gene PRKG1: skipping.
Problem with re-annotating mutations in gene PRKG2: skipping.
Problem with re-annotating mutations in gene PRKRA: skipping.
Problem with re-annotating mutations in gene PRKRIR: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PRKX: skipping.
Problem with re-annotating mutations in gene PRL: skipping.
Problem with re-annotating mutations in gene PRLR: skipping.
Problem with re-annotating mutations in gene PRM1: skipping.
Problem with re-annotating mutations in gene PRM2: skipping.
Problem with re-annotating mutations in gene PRMT10: skipping.
Problem with re-annotating mutations in gene PRMT3: skipping.
Problem with re-annotating mutations in gene PRMT7: skipping.
Problem with re-annotating mutations in gene PRMT8: skipping.
Problem with re-annotating mutations in gene PRNP: skipping.
Problem with re-annotating mutations in gene PROCA1: skipping.
Problem with re-annotating mutations in gene PROKR1: skipping.
Problem with re-annotating mutations in gene PROKR2: skipping.
10000/14661 Problem with re-annotating mutations in gene PROM1: skipping.
Problem with re-annotating mutations in gene PROM2: skipping.
Problem with re-annotating mutations in gene PROS1: skipping.
Problem with re-annotating mutations in gene PROX1: skipping.
Problem with re-annotating mutations in gene PROX2: skipping.
Problem with re-annotating mutations in gene PRPF18: skipping.
Problem with re-annotating mutations in gene PRPF19: skipping.
Problem with re-annotating mutations in gene PRPF31: skipping.
Problem with re-annotating mutations in gene PRPF38A: skipping.
Problem with re-annotating mutations in gene PRPF38B: skipping.
Problem with re-annotating mutations in gene PRPF4: skipping.
Problem with re-annotating mutations in gene PRPF40A: skipping.
Problem with re-annotating mutations in gene PRPF40B: skipping.
Problem with re-annotating mutations in gene PRPF4B: skipping.
Problem with re-annotating mutations in gene PRPF6: skipping.
Problem with re-annotating mutations in gene PRPF8: skipping.
Problem with re-annotating mutations in gene PRPH: skipping.
Problem with re-annotating mutations in gene PRPH2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PRPS2: skipping.
Problem with re-annotating mutations in gene PRPSAP1: skipping.
Problem with re-annotating mutations in gene PRPSAP2: skipping.
Problem with re-annotating mutations in gene PRR11: skipping.
Problem with re-annotating mutations in gene PRR12: skipping.
Problem with re-annotating mutations in gene PRR16: skipping.
Problem with re-annotating mutations in gene PRR19: skipping.
Problem with re-annotating mutations in gene PRR21: skipping.
Problem with re-annotating mutations in gene PRR23B: skipping.
Problem with re-annotating mutations in gene PRR5-ARHGAP8: skipping.
Problem with re-annotating mutations in gene PRR5L: skipping.
Problem with re-annotating mutations in gene PRRG4: skipping.
Problem with re-annotating mutations in gene PRRT3: skipping.
Problem with re-annotating mutations in gene PRRX1: skipping.
Problem with re-annotating mutations in gene PRSS1: skipping.
Problem with re-annotating mutations in gene PRSS12: skipping.
Problem with re-annotating mutations in gene PRSS16: skipping.
Problem with re-annotating mutations in gene PRSS22: skipping.
Problem with re-annotating mutations in gene PRSS23: skipping.
Problem with re-annotating mutations in gene PRSS3: skipping.
Problem with re-annotating mutations in gene PRSS35: skipping.
Problem with re-annotating mutations in gene PRSS36: skipping.
Problem with re-annotating mutations in gene PRSS37: skipping.
Problem with re-annotating mutations in gene PRSS38: skipping.
Problem with re-annotating mutations in gene PRSS48: skipping.
Problem with re-annotating mutations in gene PRSS8: skipping.
Problem with re-annotating mutations in gene PRTG: skipping.
Problem with re-annotating mutations in gene PRUNE2: skipping.
Problem with re-annotating mutations in gene PRX: skipping.
Problem with re-annotating mutations in gene PSAP: skipping.
Problem with re-annotating mutations in gene PSAPL1: skipping.
Problem with re-annotating mutations in gene PSAT1: skipping.
Problem with re-annotating mutations in gene PSD: skipping.
Problem with re-annotating mutations in gene PSD2: skipping.
Problem with re-annotating mutations in gene PSD3: skipping.
Problem with re-annotating mutations in gene PSD4: skipping.
Problem with re-annotating mutations in gene PSEN1: skipping.
Problem with re-annotating mutations in gene PSEN2: skipping.
Problem with re-annotating mutations in gene PSG1: skipping.
Problem with re-annotating mutations in gene PSG2: skipping.
Problem with re-annotating mutations in gene PSG3: skipping.
Problem with re-annotating mutations in gene PSG4: skipping.
Problem with re-annotating mutations in gene PSG6: skipping.
Problem with re-annotating mutations in gene PSG7: skipping.
Problem with re-annotating mutations in gene PSG8: skipping.
Problem with re-annotating mutations in gene PSG9: skipping.
Problem with re-annotating mutations in gene PSMA3: skipping.
Problem with re-annotating mutations in gene PSMA4: skipping.
10100/14661 Problem with re-annotating mutations in gene PSMA8: skipping.
Problem with re-annotating mutations in gene PSMB2: skipping.
Problem with re-annotating mutations in gene PSMB5: skipping.
Problem with re-annotating mutations in gene PSMB6: skipping.
WARNING: unknown chromosome(s):
    'chr6_qbl_hap2'

Problem with re-annotating mutations in gene PSMB8: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene PSMB9: skipping.
Problem with re-annotating mutations in gene PSMC3: skipping.
Problem with re-annotating mutations in gene PSMC5: skipping.
Problem with re-annotating mutations in gene PSMC6: skipping.
Problem with re-annotating mutations in gene PSMD1: skipping.
Problem with re-annotating mutations in gene PSMD11: skipping.
Problem with re-annotating mutations in gene PSMD12: skipping.
Problem with re-annotating mutations in gene PSMD13: skipping.
Problem with re-annotating mutations in gene PSMD2: skipping.
Problem with re-annotating mutations in gene PSMD3: skipping.
Problem with re-annotating mutations in gene PSMD5: skipping.
Problem with re-annotating mutations in gene PSMD6: skipping.
Problem with re-annotating mutations in gene PSME3: skipping.
Problem with re-annotating mutations in gene PSME4: skipping.
Problem with re-annotating mutations in gene PSMF1: skipping.
Problem with re-annotating mutations in gene PSPC1: skipping.
Problem with re-annotating mutations in gene PSTK: skipping.
Problem with re-annotating mutations in gene PTAR1: skipping.
Problem with re-annotating mutations in gene PTBP2: skipping.
Problem with re-annotating mutations in gene PTCD2: skipping.
Problem with re-annotating mutations in gene PTCD3: skipping.
Problem with re-annotating mutations in gene PTCH1: skipping.
Problem with re-annotating mutations in gene PTCH2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene PTCHD1: skipping.
Problem with re-annotating mutations in gene PTCHD2: skipping.
Problem with re-annotating mutations in gene PTCHD3: skipping.
Problem with re-annotating mutations in gene PTCRA: skipping.
Problem with re-annotating mutations in gene PTDSS1: skipping.
Problem with re-annotating mutations in gene PTEN: skipping.
Problem with re-annotating mutations in gene PTER: skipping.
Problem with re-annotating mutations in gene PTGER3: skipping.
Problem with re-annotating mutations in gene PTGFR: skipping.
Problem with re-annotating mutations in gene PTGFRN: skipping.
Problem with re-annotating mutations in gene PTGIS: skipping.
Problem with re-annotating mutations in gene PTGR1: skipping.
Problem with re-annotating mutations in gene PTGR2: skipping.
Problem with re-annotating mutations in gene PTGS1: skipping.
Problem with re-annotating mutations in gene PTGS2: skipping.
Problem with re-annotating mutations in gene PTH: skipping.
Problem with re-annotating mutations in gene PTH1R: skipping.
Problem with re-annotating mutations in gene PTH2: skipping.
Problem with re-annotating mutations in gene PTH2R: skipping.
Problem with re-annotating mutations in gene PTK2: skipping.
Problem with re-annotating mutations in gene PTK7: skipping.
Problem with re-annotating mutations in gene PTN: skipping.
Problem with re-annotating mutations in gene PTOV1: skipping.
Problem with re-annotating mutations in gene PTPDC1: skipping.
Problem with re-annotating mutations in gene PTPLAD2: skipping.
Problem with re-annotating mutations in gene PTPMT1: skipping.
Problem with re-annotating mutations in gene PTPN1: skipping.
Problem with re-annotating mutations in gene PTPN11: skipping.
Problem with re-annotating mutations in gene PTPN12: skipping.
Problem with re-annotating mutations in gene PTPN13: skipping.
Problem with re-annotating mutations in gene PTPN14: skipping.
Problem with re-annotating mutations in gene PTPN2: skipping.
Problem with re-annotating mutations in gene PTPN21: skipping.
Problem with re-annotating mutations in gene PTPN22: skipping.
Problem with re-annotating mutations in gene PTPN23: skipping.
Problem with re-annotating mutations in gene PTPN3: skipping.
Problem with re-annotating mutations in gene PTPN4: skipping.
Problem with re-annotating mutations in gene PTPN6: skipping.
Problem with re-annotating mutations in gene PTPN7: skipping.
Problem with re-annotating mutations in gene PTPN9: skipping.
Problem with re-annotating mutations in gene PTPRA: skipping.
Problem with re-annotating mutations in gene PTPRB: skipping.
10200/14661 Problem with re-annotating mutations in gene PTPRC: skipping.
Problem with re-annotating mutations in gene PTPRD: skipping.
Problem with re-annotating mutations in gene PTPRE: skipping.
Problem with re-annotating mutations in gene PTPRF: skipping.
Problem with re-annotating mutations in gene PTPRG: skipping.
Problem with re-annotating mutations in gene PTPRH: skipping.
Problem with re-annotating mutations in gene PTPRJ: skipping.
Problem with re-annotating mutations in gene PTPRK: skipping.
Problem with re-annotating mutations in gene PTPRM: skipping.
Problem with re-annotating mutations in gene PTPRN: skipping.
Problem with re-annotating mutations in gene PTPRN2: skipping.
Problem with re-annotating mutations in gene PTPRO: skipping.
Problem with re-annotating mutations in gene PTPRR: skipping.
Problem with re-annotating mutations in gene PTPRS: skipping.
Problem with re-annotating mutations in gene PTPRT: skipping.
Problem with re-annotating mutations in gene PTPRU: skipping.
Problem with re-annotating mutations in gene PTPRZ1: skipping.
Problem with re-annotating mutations in gene PTRF: skipping.
Problem with re-annotating mutations in gene PTX3: skipping.
Problem with re-annotating mutations in gene PUM1: skipping.
Problem with re-annotating mutations in gene PUM2: skipping.
Problem with re-annotating mutations in gene PURG: skipping.
Problem with re-annotating mutations in gene PUS10: skipping.
Problem with re-annotating mutations in gene PUS3: skipping.
Problem with re-annotating mutations in gene PUS7: skipping.
Problem with re-annotating mutations in gene PUS7L: skipping.
Problem with re-annotating mutations in gene PVRL1: skipping.
Problem with re-annotating mutations in gene PVRL2: skipping.
Problem with re-annotating mutations in gene PVRL3: skipping.
Problem with re-annotating mutations in gene PVRL4: skipping.
Problem with re-annotating mutations in gene PWP1: skipping.
Problem with re-annotating mutations in gene PWP2: skipping.
Problem with re-annotating mutations in gene PWWP2A: skipping.
Problem with re-annotating mutations in gene PXDN: skipping.
Problem with re-annotating mutations in gene PXDNL: skipping.
Problem with re-annotating mutations in gene PXMP4: skipping.
Problem with re-annotating mutations in gene PYDC1: skipping.
Problem with re-annotating mutations in gene PYGB: skipping.
Problem with re-annotating mutations in gene PYGL: skipping.
Problem with re-annotating mutations in gene PYGM: skipping.
Problem with re-annotating mutations in gene PYGO1: skipping.
Problem with re-annotating mutations in gene PYGO2: skipping.
Problem with re-annotating mutations in gene PYHIN1: skipping.
Problem with re-annotating mutations in gene PYROXD1: skipping.
Problem with re-annotating mutations in gene PYROXD2: skipping.
Problem with re-annotating mutations in gene PZP: skipping.
Problem with re-annotating mutations in gene ProSAPiP1: skipping.
Problem with re-annotating mutations in gene QARS: skipping.
Problem with re-annotating mutations in gene QKI: skipping.
Problem with re-annotating mutations in gene QPCT: skipping.
Problem with re-annotating mutations in gene QRFPR: skipping.
Problem with re-annotating mutations in gene QRICH1: skipping.
Problem with re-annotating mutations in gene QRICH2: skipping.
Problem with re-annotating mutations in gene QRSL1: skipping.
Problem with re-annotating mutations in gene QSER1: skipping.
Problem with re-annotating mutations in gene QSOX1: skipping.
Problem with re-annotating mutations in gene QTRT1: skipping.
Problem with re-annotating mutations in gene R3HDM1: skipping.
Problem with re-annotating mutations in gene R3HDM2: skipping.
Problem with re-annotating mutations in gene RAB11B: skipping.
Problem with re-annotating mutations in gene RAB11FIP1: skipping.
Problem with re-annotating mutations in gene RAB11FIP2: skipping.
Problem with re-annotating mutations in gene RAB11FIP4: skipping.
Problem with re-annotating mutations in gene RAB15: skipping.
Problem with re-annotating mutations in gene RAB19: skipping.
Problem with re-annotating mutations in gene RAB23: skipping.
Problem with re-annotating mutations in gene RAB24: skipping.
Problem with re-annotating mutations in gene RAB25: skipping.
Problem with re-annotating mutations in gene RAB27A: skipping.
Problem with re-annotating mutations in gene RAB27B: skipping.
Problem with re-annotating mutations in gene RAB30: skipping.
Problem with re-annotating mutations in gene RAB31: skipping.
Problem with re-annotating mutations in gene RAB32: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RAB33A: skipping.
Problem with re-annotating mutations in gene RAB36: skipping.
10300/14661 Problem with re-annotating mutations in gene RAB37: skipping.
Problem with re-annotating mutations in gene RAB39: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RAB39B: skipping.
Problem with re-annotating mutations in gene RAB3A: skipping.
Problem with re-annotating mutations in gene RAB3C: skipping.
Problem with re-annotating mutations in gene RAB3D: skipping.
Problem with re-annotating mutations in gene RAB3GAP1: skipping.
Problem with re-annotating mutations in gene RAB3GAP2: skipping.
Problem with re-annotating mutations in gene RAB40B: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RAB41: skipping.
Problem with re-annotating mutations in gene RAB4B: skipping.
Problem with re-annotating mutations in gene RAB6A: skipping.
Problem with re-annotating mutations in gene RAB7A: skipping.
Problem with re-annotating mutations in gene RAB7L1: skipping.
Problem with re-annotating mutations in gene RAB8B: skipping.
Problem with re-annotating mutations in gene RABEP1: skipping.
Problem with re-annotating mutations in gene RABEP2: skipping.
Problem with re-annotating mutations in gene RABGAP1: skipping.
Problem with re-annotating mutations in gene RABGAP1L: skipping.
Problem with re-annotating mutations in gene RABGEF1: skipping.
Problem with re-annotating mutations in gene RABGGTA: skipping.
Problem with re-annotating mutations in gene RABGGTB: skipping.
Problem with re-annotating mutations in gene RABL3: skipping.
Problem with re-annotating mutations in gene RACGAP1: skipping.
Problem with re-annotating mutations in gene RAD17: skipping.
Problem with re-annotating mutations in gene RAD18: skipping.
Problem with re-annotating mutations in gene RAD21: skipping.
Problem with re-annotating mutations in gene RAD23B: skipping.
Problem with re-annotating mutations in gene RAD50: skipping.
Problem with re-annotating mutations in gene RAD51AP1: skipping.
Problem with re-annotating mutations in gene RAD51AP2: skipping.
Problem with re-annotating mutations in gene RAD51C: skipping.
Problem with re-annotating mutations in gene RAD51L3: skipping.
Problem with re-annotating mutations in gene RAD52: skipping.
Problem with re-annotating mutations in gene RAD54B: skipping.
Problem with re-annotating mutations in gene RAD54L: skipping.
Problem with re-annotating mutations in gene RAD54L2: skipping.
Problem with re-annotating mutations in gene RAD9B: skipping.
Problem with re-annotating mutations in gene RAE1: skipping.
Problem with re-annotating mutations in gene RAET1E: skipping.
Problem with re-annotating mutations in gene RAF1: skipping.
Problem with re-annotating mutations in gene RAG1: skipping.
Problem with re-annotating mutations in gene RAGE: skipping.
Problem with re-annotating mutations in gene RAI1: skipping.
Problem with re-annotating mutations in gene RAI14: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RAI2: skipping.
Problem with re-annotating mutations in gene RALB: skipping.
Problem with re-annotating mutations in gene RALBP1: skipping.
Problem with re-annotating mutations in gene RALGAPA1: skipping.
Problem with re-annotating mutations in gene RALGAPA2: skipping.
Problem with re-annotating mutations in gene RALGAPB: skipping.
Problem with re-annotating mutations in gene RALGPS1: skipping.
Problem with re-annotating mutations in gene RALGPS2: skipping.
Problem with re-annotating mutations in gene RALYL: skipping.
Problem with re-annotating mutations in gene RAMP3: skipping.
Problem with re-annotating mutations in gene RAN: skipping.
Problem with re-annotating mutations in gene RANBP10: skipping.
Problem with re-annotating mutations in gene RANBP17: skipping.
Problem with re-annotating mutations in gene RANBP2: skipping.
Problem with re-annotating mutations in gene RANBP3: skipping.
Problem with re-annotating mutations in gene RANBP3L: skipping.
Problem with re-annotating mutations in gene RANBP6: skipping.
Problem with re-annotating mutations in gene RAP1A: skipping.
Problem with re-annotating mutations in gene RAP1B: skipping.
Problem with re-annotating mutations in gene RAP1GAP: skipping.
Problem with re-annotating mutations in gene RAP1GAP2: skipping.
Problem with re-annotating mutations in gene RAP1GDS1: skipping.
Problem with re-annotating mutations in gene RAPGEF1: skipping.
Problem with re-annotating mutations in gene RAPGEF2: skipping.
Problem with re-annotating mutations in gene RAPGEF3: skipping.
10400/14661 Problem with re-annotating mutations in gene RAPGEF4: skipping.
Problem with re-annotating mutations in gene RAPGEF5: skipping.
Problem with re-annotating mutations in gene RAPGEF6: skipping.
Problem with re-annotating mutations in gene RAPH1: skipping.
Problem with re-annotating mutations in gene RAPSN: skipping.
Problem with re-annotating mutations in gene RARB: skipping.
Problem with re-annotating mutations in gene RARG: skipping.
Problem with re-annotating mutations in gene RARRES1: skipping.
Problem with re-annotating mutations in gene RARS: skipping.
Problem with re-annotating mutations in gene RARS2: skipping.
Problem with re-annotating mutations in gene RASA1: skipping.
Problem with re-annotating mutations in gene RASA2: skipping.
Problem with re-annotating mutations in gene RASA3: skipping.
Problem with re-annotating mutations in gene RASAL1: skipping.
Problem with re-annotating mutations in gene RASAL2: skipping.
Problem with re-annotating mutations in gene RASEF: skipping.
Problem with re-annotating mutations in gene RASGEF1A: skipping.
Problem with re-annotating mutations in gene RASGEF1B: skipping.
Problem with re-annotating mutations in gene RASGEF1C: skipping.
Problem with re-annotating mutations in gene RASGRF1: skipping.
Problem with re-annotating mutations in gene RASGRF2: skipping.
Problem with re-annotating mutations in gene RASGRP1: skipping.
Problem with re-annotating mutations in gene RASGRP2: skipping.
Problem with re-annotating mutations in gene RASGRP3: skipping.
Problem with re-annotating mutations in gene RASGRP4: skipping.
Problem with re-annotating mutations in gene RASIP1: skipping.
Problem with re-annotating mutations in gene RASL11A: skipping.
Problem with re-annotating mutations in gene RASSF2: skipping.
Problem with re-annotating mutations in gene RASSF4: skipping.
Problem with re-annotating mutations in gene RASSF5: skipping.
Problem with re-annotating mutations in gene RASSF6: skipping.
Problem with re-annotating mutations in gene RASSF8: skipping.
Problem with re-annotating mutations in gene RASSF9: skipping.
Problem with re-annotating mutations in gene RAVER2: skipping.
Problem with re-annotating mutations in gene RB1: skipping.
Problem with re-annotating mutations in gene RB1CC1: skipping.
Problem with re-annotating mutations in gene RBAK: skipping.
Problem with re-annotating mutations in gene RBBP5: skipping.
Problem with re-annotating mutations in gene RBBP6: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RBBP7: skipping.
Problem with re-annotating mutations in gene RBBP8: skipping.
Problem with re-annotating mutations in gene RBL1: skipping.
Problem with re-annotating mutations in gene RBL2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RBM10: skipping.
Problem with re-annotating mutations in gene RBM12: skipping.
Problem with re-annotating mutations in gene RBM12B: skipping.
Problem with re-annotating mutations in gene RBM15: skipping.
Problem with re-annotating mutations in gene RBM15B: skipping.
Problem with re-annotating mutations in gene RBM16: skipping.
Problem with re-annotating mutations in gene RBM17: skipping.
Problem with re-annotating mutations in gene RBM19: skipping.
Problem with re-annotating mutations in gene RBM22: skipping.
Problem with re-annotating mutations in gene RBM24: skipping.
Problem with re-annotating mutations in gene RBM25: skipping.
Problem with re-annotating mutations in gene RBM26: skipping.
Problem with re-annotating mutations in gene RBM27: skipping.
Problem with re-annotating mutations in gene RBM33: skipping.
Problem with re-annotating mutations in gene RBM39: skipping.
Problem with re-annotating mutations in gene RBM4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RBM41: skipping.
Problem with re-annotating mutations in gene RBM42: skipping.
Problem with re-annotating mutations in gene RBM43: skipping.
Problem with re-annotating mutations in gene RBM44: skipping.
Problem with re-annotating mutations in gene RBM45: skipping.
Problem with re-annotating mutations in gene RBM46: skipping.
Problem with re-annotating mutations in gene RBM4B: skipping.
Problem with re-annotating mutations in gene RBM5: skipping.
Problem with re-annotating mutations in gene RBM6: skipping.
Problem with re-annotating mutations in gene RBM7: skipping.
Problem with re-annotating mutations in gene RBM9: skipping.
Problem with re-annotating mutations in gene RBMS3: skipping.
Problem with re-annotating mutations in gene RBMXL2: skipping.
Problem with re-annotating mutations in gene RBP1: skipping.
Problem with re-annotating mutations in gene RBP3: skipping.
Problem with re-annotating mutations in gene RBPJ: skipping.
Problem with re-annotating mutations in gene RBPJL: skipping.
Problem with re-annotating mutations in gene RBPMS2: skipping.
10500/14661 Problem with re-annotating mutations in gene RC3H1: skipping.
Problem with re-annotating mutations in gene RC3H2: skipping.
Problem with re-annotating mutations in gene RCAN1: skipping.
Problem with re-annotating mutations in gene RCAN3: skipping.
Problem with re-annotating mutations in gene RCBTB2: skipping.
Problem with re-annotating mutations in gene RCC1: skipping.
Problem with re-annotating mutations in gene RCC2: skipping.
Problem with re-annotating mutations in gene RCCD1: skipping.
Problem with re-annotating mutations in gene RCHY1: skipping.
Problem with re-annotating mutations in gene RCL1: skipping.
Problem with re-annotating mutations in gene RCN1: skipping.
Problem with re-annotating mutations in gene RCN3: skipping.
Problem with re-annotating mutations in gene RCOR2: skipping.
Problem with re-annotating mutations in gene RCOR3: skipping.
Problem with re-annotating mutations in gene RCSD1: skipping.
Problem with re-annotating mutations in gene RCVRN: skipping.
Problem with re-annotating mutations in gene RD3: skipping.
Problem with re-annotating mutations in gene RDH10: skipping.
Problem with re-annotating mutations in gene RDH12: skipping.
Problem with re-annotating mutations in gene RDH16: skipping.
Problem with re-annotating mutations in gene RDH8: skipping.
Problem with re-annotating mutations in gene RDX: skipping.
Problem with re-annotating mutations in gene RECK: skipping.
Problem with re-annotating mutations in gene RECQL: skipping.
Problem with re-annotating mutations in gene RECQL5: skipping.
Problem with re-annotating mutations in gene REEP2: skipping.
Problem with re-annotating mutations in gene REG1A: skipping.
Problem with re-annotating mutations in gene REG1B: skipping.
Problem with re-annotating mutations in gene REG3A: skipping.
Problem with re-annotating mutations in gene REL: skipping.
Problem with re-annotating mutations in gene RELA: skipping.
Problem with re-annotating mutations in gene RELL2: skipping.
Problem with re-annotating mutations in gene RELN: skipping.
Problem with re-annotating mutations in gene RELT: skipping.
Problem with re-annotating mutations in gene REM1: skipping.
Problem with re-annotating mutations in gene REN: skipping.
Problem with re-annotating mutations in gene REPS1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene REPS2: skipping.
Problem with re-annotating mutations in gene RERE: skipping.
Problem with re-annotating mutations in gene RERG: skipping.
Problem with re-annotating mutations in gene RERGL: skipping.
Problem with re-annotating mutations in gene REST: skipping.
Problem with re-annotating mutations in gene RET: skipping.
Problem with re-annotating mutations in gene RETSAT: skipping.
Problem with re-annotating mutations in gene REV1: skipping.
Problem with re-annotating mutations in gene REV3L: skipping.
Problem with re-annotating mutations in gene REXO4: skipping.
Problem with re-annotating mutations in gene RFC1: skipping.
Problem with re-annotating mutations in gene RFC4: skipping.
Problem with re-annotating mutations in gene RFC5: skipping.
Problem with re-annotating mutations in gene RFPL4B: skipping.
Problem with re-annotating mutations in gene RFTN1: skipping.
Problem with re-annotating mutations in gene RFTN2: skipping.
Problem with re-annotating mutations in gene RFWD2: skipping.
Problem with re-annotating mutations in gene RFWD3: skipping.
Problem with re-annotating mutations in gene RFX2: skipping.
Problem with re-annotating mutations in gene RFX3: skipping.
Problem with re-annotating mutations in gene RFX4: skipping.
Problem with re-annotating mutations in gene RFX6: skipping.
Problem with re-annotating mutations in gene RFX7: skipping.
Problem with re-annotating mutations in gene RG9MTD1: skipping.
Problem with re-annotating mutations in gene RG9MTD2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RGAG1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RGAG4: skipping.
Problem with re-annotating mutations in gene RGL1: skipping.
Problem with re-annotating mutations in gene RGL4: skipping.
Problem with re-annotating mutations in gene RGMB: skipping.
Problem with re-annotating mutations in gene RGNEF: skipping.
Problem with re-annotating mutations in gene RGP1: skipping.
Problem with re-annotating mutations in gene RGR: skipping.
Problem with re-annotating mutations in gene RGS12: skipping.
Problem with re-annotating mutations in gene RGS13: skipping.
Problem with re-annotating mutations in gene RGS14: skipping.
10600/14661 Problem with re-annotating mutations in gene RGS16: skipping.
Problem with re-annotating mutations in gene RGS17: skipping.
Problem with re-annotating mutations in gene RGS18: skipping.
Problem with re-annotating mutations in gene RGS2: skipping.
Problem with re-annotating mutations in gene RGS20: skipping.
Problem with re-annotating mutations in gene RGS21: skipping.
Problem with re-annotating mutations in gene RGS22: skipping.
Problem with re-annotating mutations in gene RGS3: skipping.
Problem with re-annotating mutations in gene RGS4: skipping.
Problem with re-annotating mutations in gene RGS6: skipping.
Problem with re-annotating mutations in gene RGS7: skipping.
Problem with re-annotating mutations in gene RGS7BP: skipping.
Problem with re-annotating mutations in gene RGS9: skipping.
Problem with re-annotating mutations in gene RHAG: skipping.
Problem with re-annotating mutations in gene RHBDD1: skipping.
Problem with re-annotating mutations in gene RHBDF1: skipping.
Problem with re-annotating mutations in gene RHBDF2: skipping.
Problem with re-annotating mutations in gene RHBDL3: skipping.
Problem with re-annotating mutations in gene RHBG: skipping.
Problem with re-annotating mutations in gene RHCE: skipping.
Problem with re-annotating mutations in gene RHCG: skipping.
Problem with re-annotating mutations in gene RHD: skipping.
Problem with re-annotating mutations in gene RHO: skipping.
Problem with re-annotating mutations in gene RHOA: skipping.
Problem with re-annotating mutations in gene RHOBTB1: skipping.
Problem with re-annotating mutations in gene RHOBTB2: skipping.
Problem with re-annotating mutations in gene RHOBTB3: skipping.
Problem with re-annotating mutations in gene RHOC: skipping.
Problem with re-annotating mutations in gene RHOH: skipping.
Problem with re-annotating mutations in gene RHOJ: skipping.
Problem with re-annotating mutations in gene RHOT1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RHOXF2B: skipping.
Problem with re-annotating mutations in gene RHPN2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RIBC1: skipping.
Problem with re-annotating mutations in gene RIBC2: skipping.
Problem with re-annotating mutations in gene RIC8A: skipping.
Problem with re-annotating mutations in gene RIC8B: skipping.
Problem with re-annotating mutations in gene RICTOR: skipping.
Problem with re-annotating mutations in gene RIF1: skipping.
Problem with re-annotating mutations in gene RILP: skipping.
Problem with re-annotating mutations in gene RILPL2: skipping.
Problem with re-annotating mutations in gene RIMBP2: skipping.
Problem with re-annotating mutations in gene RIMBP3: skipping.
Problem with re-annotating mutations in gene RIMKLA: skipping.
Problem with re-annotating mutations in gene RIMKLB: skipping.
Problem with re-annotating mutations in gene RIMS1: skipping.
Problem with re-annotating mutations in gene RIMS2: skipping.
Problem with re-annotating mutations in gene RIMS3: skipping.
Problem with re-annotating mutations in gene RIMS4: skipping.
Problem with re-annotating mutations in gene RIN3: skipping.
Problem with re-annotating mutations in gene RING1: skipping.
Problem with re-annotating mutations in gene RINL: skipping.
Problem with re-annotating mutations in gene RINT1: skipping.
Problem with re-annotating mutations in gene RIOK1: skipping.
Problem with re-annotating mutations in gene RIOK2: skipping.
Problem with re-annotating mutations in gene RIPK1: skipping.
Problem with re-annotating mutations in gene RIPK2: skipping.
Problem with re-annotating mutations in gene RIPK3: skipping.
Problem with re-annotating mutations in gene RIPK4: skipping.
Problem with re-annotating mutations in gene RIPPLY2: skipping.
Problem with re-annotating mutations in gene RIT1: skipping.
Problem with re-annotating mutations in gene RIT2: skipping.
Problem with re-annotating mutations in gene RLBP1: skipping.
Problem with re-annotating mutations in gene RLF: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RLIM: skipping.
Problem with re-annotating mutations in gene RLN2: skipping.
Problem with re-annotating mutations in gene RLTPR: skipping.
Problem with re-annotating mutations in gene RMI1: skipping.
Problem with re-annotating mutations in gene RMND5B: skipping.
Problem with re-annotating mutations in gene RNASE11: skipping.
Problem with re-annotating mutations in gene RNASE2: skipping.
Problem with re-annotating mutations in gene RNASE7: skipping.
Problem with re-annotating mutations in gene RNASE9: skipping.
Problem with re-annotating mutations in gene RNASEH2A: skipping.
Problem with re-annotating mutations in gene RNASEL: skipping.
Problem with re-annotating mutations in gene RNASET2: skipping.
Problem with re-annotating mutations in gene RND3: skipping.
Problem with re-annotating mutations in gene RNF10: skipping.
Problem with re-annotating mutations in gene RNF103: skipping.
Problem with re-annotating mutations in gene RNF111: skipping.
10700/14661 Problem with re-annotating mutations in gene RNF113B: skipping.
Problem with re-annotating mutations in gene RNF115: skipping.
Problem with re-annotating mutations in gene RNF122: skipping.
Problem with re-annotating mutations in gene RNF123: skipping.
Problem with re-annotating mutations in gene RNF130: skipping.
Problem with re-annotating mutations in gene RNF133: skipping.
Problem with re-annotating mutations in gene RNF135: skipping.
Problem with re-annotating mutations in gene RNF139: skipping.
Problem with re-annotating mutations in gene RNF14: skipping.
Problem with re-annotating mutations in gene RNF141: skipping.
Problem with re-annotating mutations in gene RNF145: skipping.
Problem with re-annotating mutations in gene RNF146: skipping.
Problem with re-annotating mutations in gene RNF148: skipping.
Problem with re-annotating mutations in gene RNF150: skipping.
Problem with re-annotating mutations in gene RNF152: skipping.
Problem with re-annotating mutations in gene RNF157: skipping.
Problem with re-annotating mutations in gene RNF165: skipping.
Problem with re-annotating mutations in gene RNF167: skipping.
Problem with re-annotating mutations in gene RNF168: skipping.
Problem with re-annotating mutations in gene RNF169: skipping.
Problem with re-annotating mutations in gene RNF17: skipping.
Problem with re-annotating mutations in gene RNF175: skipping.
Problem with re-annotating mutations in gene RNF180: skipping.
Problem with re-annotating mutations in gene RNF182: skipping.
Problem with re-annotating mutations in gene RNF19A: skipping.
Problem with re-annotating mutations in gene RNF19B: skipping.
Problem with re-annotating mutations in gene RNF2: skipping.
Problem with re-annotating mutations in gene RNF20: skipping.
Problem with re-annotating mutations in gene RNF212: skipping.
Problem with re-annotating mutations in gene RNF213: skipping.
Problem with re-annotating mutations in gene RNF214: skipping.
Problem with re-annotating mutations in gene RNF216: skipping.
Problem with re-annotating mutations in gene RNF217: skipping.
Problem with re-annotating mutations in gene RNF219: skipping.
Problem with re-annotating mutations in gene RNF25: skipping.
Problem with re-annotating mutations in gene RNF31: skipping.
Problem with re-annotating mutations in gene RNF32: skipping.
Problem with re-annotating mutations in gene RNF34: skipping.
Problem with re-annotating mutations in gene RNF40: skipping.
Problem with re-annotating mutations in gene RNF43: skipping.
Problem with re-annotating mutations in gene RNF6: skipping.
Problem with re-annotating mutations in gene RNF8: skipping.
Problem with re-annotating mutations in gene RNFT1: skipping.
Problem with re-annotating mutations in gene RNFT2: skipping.
Problem with re-annotating mutations in gene RNGTT: skipping.
Problem with re-annotating mutations in gene RNH1: skipping.
Problem with re-annotating mutations in gene RNMT: skipping.
Problem with re-annotating mutations in gene RNPEP: skipping.
Problem with re-annotating mutations in gene ROBO1: skipping.
Problem with re-annotating mutations in gene ROBO2: skipping.
Problem with re-annotating mutations in gene ROBO3: skipping.
Problem with re-annotating mutations in gene ROBO4: skipping.
Problem with re-annotating mutations in gene ROCK1: skipping.
Problem with re-annotating mutations in gene ROCK2: skipping.
Problem with re-annotating mutations in gene ROD1: skipping.
Problem with re-annotating mutations in gene ROR1: skipping.
Problem with re-annotating mutations in gene ROR2: skipping.
Problem with re-annotating mutations in gene RORA: skipping.
Problem with re-annotating mutations in gene RORB: skipping.
Problem with re-annotating mutations in gene ROS1: skipping.
Problem with re-annotating mutations in gene RP1: skipping.
Problem with re-annotating mutations in gene RP1L1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RP2: skipping.
Problem with re-annotating mutations in gene RP9: skipping.
Problem with re-annotating mutations in gene RPA1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RPA4: skipping.
Problem with re-annotating mutations in gene RPAIN: skipping.
Problem with re-annotating mutations in gene RPAP1: skipping.
Problem with re-annotating mutations in gene RPAP2: skipping.
Problem with re-annotating mutations in gene RPAP3: skipping.
Problem with re-annotating mutations in gene RPE: skipping.
Problem with re-annotating mutations in gene RPE65: skipping.
Problem with re-annotating mutations in gene RPF1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RPGR: skipping.
Problem with re-annotating mutations in gene RPGRIP1: skipping.
Problem with re-annotating mutations in gene RPGRIP1L: skipping.
Problem with re-annotating mutations in gene RPH3A: skipping.
Problem with re-annotating mutations in gene RPIA: skipping.
10800/14661 Problem with re-annotating mutations in gene RPL10A: skipping.
Problem with re-annotating mutations in gene RPL10L: skipping.
Problem with re-annotating mutations in gene RPL22: skipping.
Problem with re-annotating mutations in gene RPL28: skipping.
Problem with re-annotating mutations in gene RPL3: skipping.
Problem with re-annotating mutations in gene RPL31: skipping.
Problem with re-annotating mutations in gene RPL4: skipping.
Problem with re-annotating mutations in gene RPL6: skipping.
Problem with re-annotating mutations in gene RPL9: skipping.
Problem with re-annotating mutations in gene RPLP0: skipping.
Problem with re-annotating mutations in gene RPP14: skipping.
Problem with re-annotating mutations in gene RPP40: skipping.
Problem with re-annotating mutations in gene RPRD1A: skipping.
Problem with re-annotating mutations in gene RPRD1B: skipping.
Problem with re-annotating mutations in gene RPRD2: skipping.
Problem with re-annotating mutations in gene RPS16: skipping.
WARNING: unknown chromosome(s):
    'chr6_qbl_hap2'

Problem with re-annotating mutations in gene RPS18: skipping.
Problem with re-annotating mutations in gene RPS23: skipping.
Problem with re-annotating mutations in gene RPS3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RPS4X: skipping.
Problem with re-annotating mutations in gene RPS6KA2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RPS6KA3: skipping.
Problem with re-annotating mutations in gene RPS6KA5: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RPS6KA6: skipping.
Problem with re-annotating mutations in gene RPS6KB1: skipping.
Problem with re-annotating mutations in gene RPS6KB2: skipping.
Problem with re-annotating mutations in gene RPS6KC1: skipping.
Problem with re-annotating mutations in gene RPS9: skipping.
Problem with re-annotating mutations in gene RPTOR: skipping.
Problem with re-annotating mutations in gene RPUSD4: skipping.
Problem with re-annotating mutations in gene RRAD: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RRAGB: skipping.
Problem with re-annotating mutations in gene RRAGC: skipping.
Problem with re-annotating mutations in gene RRAS2: skipping.
Problem with re-annotating mutations in gene RRBP1: skipping.
Problem with re-annotating mutations in gene RREB1: skipping.
Problem with re-annotating mutations in gene RRH: skipping.
Problem with re-annotating mutations in gene RRM1: skipping.
Problem with re-annotating mutations in gene RRM2: skipping.
Problem with re-annotating mutations in gene RRP1B: skipping.
Problem with re-annotating mutations in gene RRP8: skipping.
Problem with re-annotating mutations in gene RRP9: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene RS1: skipping.
Problem with re-annotating mutations in gene RSAD1: skipping.
Problem with re-annotating mutations in gene RSAD2: skipping.
Problem with re-annotating mutations in gene RSBN1: skipping.
Problem with re-annotating mutations in gene RSBN1L: skipping.
Problem with re-annotating mutations in gene RSC1A1: skipping.
Problem with re-annotating mutations in gene RSF1: skipping.
Problem with re-annotating mutations in gene RSL1D1: skipping.
Problem with re-annotating mutations in gene RSPH1: skipping.
Problem with re-annotating mutations in gene RSPH10B: skipping.
Problem with re-annotating mutations in gene RSPH4A: skipping.
Problem with re-annotating mutations in gene RSPH6A: skipping.
Problem with re-annotating mutations in gene RSPH9: skipping.
Problem with re-annotating mutations in gene RSPO1: skipping.
Problem with re-annotating mutations in gene RSPO2: skipping.
Problem with re-annotating mutations in gene RSPO3: skipping.
Problem with re-annotating mutations in gene RSPRY1: skipping.
Problem with re-annotating mutations in gene RSRC1: skipping.
Problem with re-annotating mutations in gene RSRC2: skipping.
Problem with re-annotating mutations in gene RTBDN: skipping.
Problem with re-annotating mutations in gene RTCD1: skipping.
Problem with re-annotating mutations in gene RTDR1: skipping.
Problem with re-annotating mutations in gene RTKN: skipping.
10900/14661 Problem with re-annotating mutations in gene RTN1: skipping.
Problem with re-annotating mutations in gene RTN2: skipping.
Problem with re-annotating mutations in gene RTN3: skipping.
Problem with re-annotating mutations in gene RTN4: skipping.
Problem with re-annotating mutations in gene RTN4RL1: skipping.
Problem with re-annotating mutations in gene RTN4RL2: skipping.
Problem with re-annotating mutations in gene RTP1: skipping.
Problem with re-annotating mutations in gene RTP4: skipping.
Problem with re-annotating mutations in gene RTTN: skipping.
Problem with re-annotating mutations in gene RUFY3: skipping.
Problem with re-annotating mutations in gene RUFY4: skipping.
Problem with re-annotating mutations in gene RUNDC2A: skipping.
Problem with re-annotating mutations in gene RUNDC3B: skipping.
Problem with re-annotating mutations in gene RUNX1: skipping.
Problem with re-annotating mutations in gene RUNX1T1: skipping.
Problem with re-annotating mutations in gene RUNX2: skipping.
Problem with re-annotating mutations in gene RUNX3: skipping.
Problem with re-annotating mutations in gene RUSC2: skipping.
Problem with re-annotating mutations in gene RUVBL1: skipping.
Problem with re-annotating mutations in gene RWDD1: skipping.
Problem with re-annotating mutations in gene RWDD2B: skipping.
Problem with re-annotating mutations in gene RXFP1: skipping.
Problem with re-annotating mutations in gene RXFP2: skipping.
Problem with re-annotating mutations in gene RXFP3: skipping.
Problem with re-annotating mutations in gene RXFP4: skipping.
WARNING: unknown chromosome(s):
    'chr6_qbl_hap2'

Problem with re-annotating mutations in gene RXRB: skipping.
Problem with re-annotating mutations in gene RXRG: skipping.
Problem with re-annotating mutations in gene RYK: skipping.
Problem with re-annotating mutations in gene RYR1: skipping.
Problem with re-annotating mutations in gene RYR2: skipping.
Problem with re-annotating mutations in gene RYR3: skipping.
Problem with re-annotating mutations in gene S100A2: skipping.
Problem with re-annotating mutations in gene S100A7: skipping.
Problem with re-annotating mutations in gene S100A9: skipping.
Problem with re-annotating mutations in gene S100B: skipping.
Problem with re-annotating mutations in gene S100PBP: skipping.
Problem with re-annotating mutations in gene S1PR1: skipping.
Problem with re-annotating mutations in gene S1PR3: skipping.
Problem with re-annotating mutations in gene SAA1: skipping.
Problem with re-annotating mutations in gene SAA4: skipping.
Problem with re-annotating mutations in gene SAAL1: skipping.
Problem with re-annotating mutations in gene SACS: skipping.
Problem with re-annotating mutations in gene SAE1: skipping.
Problem with re-annotating mutations in gene SAFB: skipping.
Problem with re-annotating mutations in gene SAFB2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SAGE1: skipping.
Problem with re-annotating mutations in gene SALL1: skipping.
Problem with re-annotating mutations in gene SALL2: skipping.
Problem with re-annotating mutations in gene SALL3: skipping.
Problem with re-annotating mutations in gene SALL4: skipping.
Problem with re-annotating mutations in gene SAMD11: skipping.
Problem with re-annotating mutations in gene SAMD12: skipping.
Problem with re-annotating mutations in gene SAMD14: skipping.
Problem with re-annotating mutations in gene SAMD3: skipping.
Problem with re-annotating mutations in gene SAMD4A: skipping.
Problem with re-annotating mutations in gene SAMD7: skipping.
Problem with re-annotating mutations in gene SAMD9: skipping.
Problem with re-annotating mutations in gene SAMD9L: skipping.
Problem with re-annotating mutations in gene SAMHD1: skipping.
Problem with re-annotating mutations in gene SAMM50: skipping.
Problem with re-annotating mutations in gene SAMSN1: skipping.
Problem with re-annotating mutations in gene SAP130: skipping.
Problem with re-annotating mutations in gene SAP30BP: skipping.
Problem with re-annotating mutations in gene SARDH: skipping.
Problem with re-annotating mutations in gene SARS: skipping.
Problem with re-annotating mutations in gene SARS2: skipping.
Problem with re-annotating mutations in gene SART3: skipping.
Problem with re-annotating mutations in gene SASH1: skipping.
11000/14661 Problem with re-annotating mutations in gene SASS6: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SAT1: skipping.
Problem with re-annotating mutations in gene SAT2: skipping.
Problem with re-annotating mutations in gene SATB1: skipping.
Problem with re-annotating mutations in gene SATB2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SATL1: skipping.
Problem with re-annotating mutations in gene SBF1: skipping.
Problem with re-annotating mutations in gene SBF2: skipping.
Problem with re-annotating mutations in gene SBK1: skipping.
Problem with re-annotating mutations in gene SBNO1: skipping.
Problem with re-annotating mutations in gene SBSN: skipping.
Problem with re-annotating mutations in gene SC5DL: skipping.
Problem with re-annotating mutations in gene SCAF1: skipping.
Problem with re-annotating mutations in gene SCAI: skipping.
Problem with re-annotating mutations in gene SCAMP1: skipping.
Problem with re-annotating mutations in gene SCAMP5: skipping.
Problem with re-annotating mutations in gene SCAND3: skipping.
Problem with re-annotating mutations in gene SCAP: skipping.
Problem with re-annotating mutations in gene SCAPER: skipping.
Problem with re-annotating mutations in gene SCARA3: skipping.
Problem with re-annotating mutations in gene SCARA5: skipping.
Problem with re-annotating mutations in gene SCARB2: skipping.
Problem with re-annotating mutations in gene SCD: skipping.
Problem with re-annotating mutations in gene SCD5: skipping.
Problem with re-annotating mutations in gene SCEL: skipping.
Problem with re-annotating mutations in gene SCFD1: skipping.
Problem with re-annotating mutations in gene SCFD2: skipping.
Problem with re-annotating mutations in gene SCG2: skipping.
Problem with re-annotating mutations in gene SCG3: skipping.
Problem with re-annotating mutations in gene SCGB1D1: skipping.
Problem with re-annotating mutations in gene SCGN: skipping.
Problem with re-annotating mutations in gene SCHIP1: skipping.
Problem with re-annotating mutations in gene SCIN: skipping.
Problem with re-annotating mutations in gene SCLT1: skipping.
Problem with re-annotating mutations in gene SCMH1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SCML1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SCML2: skipping.
Problem with re-annotating mutations in gene SCML4: skipping.
Problem with re-annotating mutations in gene SCN10A: skipping.
Problem with re-annotating mutations in gene SCN11A: skipping.
Problem with re-annotating mutations in gene SCN1A: skipping.
Problem with re-annotating mutations in gene SCN2A: skipping.
Problem with re-annotating mutations in gene SCN2B: skipping.
Problem with re-annotating mutations in gene SCN3A: skipping.
Problem with re-annotating mutations in gene SCN3B: skipping.
Problem with re-annotating mutations in gene SCN4A: skipping.
Problem with re-annotating mutations in gene SCN5A: skipping.
Problem with re-annotating mutations in gene SCN7A: skipping.
Problem with re-annotating mutations in gene SCN8A: skipping.
Problem with re-annotating mutations in gene SCN9A: skipping.
Problem with re-annotating mutations in gene SCNN1A: skipping.
Problem with re-annotating mutations in gene SCNN1B: skipping.
Problem with re-annotating mutations in gene SCNN1G: skipping.
Problem with re-annotating mutations in gene SCP2: skipping.
Problem with re-annotating mutations in gene SCPEP1: skipping.
Problem with re-annotating mutations in gene SCRIB: skipping.
Problem with re-annotating mutations in gene SCRN2: skipping.
Problem with re-annotating mutations in gene SCTR: skipping.
Problem with re-annotating mutations in gene SCUBE1: skipping.
Problem with re-annotating mutations in gene SCUBE2: skipping.
Problem with re-annotating mutations in gene SCUBE3: skipping.
Problem with re-annotating mutations in gene SCYL1: skipping.
Problem with re-annotating mutations in gene SCYL2: skipping.
Problem with re-annotating mutations in gene SCYL3: skipping.
Problem with re-annotating mutations in gene SDC2: skipping.
Problem with re-annotating mutations in gene SDC3: skipping.
Problem with re-annotating mutations in gene SDCCAG1: skipping.
Problem with re-annotating mutations in gene SDF2: skipping.
Problem with re-annotating mutations in gene SDHA: skipping.
Problem with re-annotating mutations in gene SDHAF2: skipping.
Problem with re-annotating mutations in gene SDHB: skipping.
Problem with re-annotating mutations in gene SDK1: skipping.
Problem with re-annotating mutations in gene SDK2: skipping.
Problem with re-annotating mutations in gene SDPR: skipping.
Problem with re-annotating mutations in gene SDR16C5: skipping.
Problem with re-annotating mutations in gene SDR39U1: skipping.
11100/14661 Problem with re-annotating mutations in gene SDS: skipping.
Problem with re-annotating mutations in gene SDSL: skipping.
Problem with re-annotating mutations in gene SEC11C: skipping.
Problem with re-annotating mutations in gene SEC13: skipping.
Problem with re-annotating mutations in gene SEC14L1: skipping.
Problem with re-annotating mutations in gene SEC14L3: skipping.
Problem with re-annotating mutations in gene SEC14L4: skipping.
Problem with re-annotating mutations in gene SEC14L5: skipping.
Problem with re-annotating mutations in gene SEC16A: skipping.
Problem with re-annotating mutations in gene SEC16B: skipping.
Problem with re-annotating mutations in gene SEC22B: skipping.
Problem with re-annotating mutations in gene SEC23A: skipping.
Problem with re-annotating mutations in gene SEC23B: skipping.
Problem with re-annotating mutations in gene SEC23IP: skipping.
Problem with re-annotating mutations in gene SEC24A: skipping.
Problem with re-annotating mutations in gene SEC24B: skipping.
Problem with re-annotating mutations in gene SEC24C: skipping.
Problem with re-annotating mutations in gene SEC24D: skipping.
Problem with re-annotating mutations in gene SEC31A: skipping.
Problem with re-annotating mutations in gene SEC61A1: skipping.
Problem with re-annotating mutations in gene SEC63: skipping.
Problem with re-annotating mutations in gene SECISBP2: skipping.
Problem with re-annotating mutations in gene SECISBP2L: skipping.
Problem with re-annotating mutations in gene SECTM1: skipping.
Problem with re-annotating mutations in gene SEL1L: skipping.
Problem with re-annotating mutations in gene SEL1L2: skipping.
Problem with re-annotating mutations in gene SEL1L3: skipping.
Problem with re-annotating mutations in gene SELE: skipping.
Problem with re-annotating mutations in gene SELL: skipping.
Problem with re-annotating mutations in gene SELO: skipping.
Problem with re-annotating mutations in gene SELP: skipping.
Problem with re-annotating mutations in gene SELPLG: skipping.
Problem with re-annotating mutations in gene SEMA3A: skipping.
Problem with re-annotating mutations in gene SEMA3C: skipping.
Problem with re-annotating mutations in gene SEMA3D: skipping.
Problem with re-annotating mutations in gene SEMA3E: skipping.
Problem with re-annotating mutations in gene SEMA3G: skipping.
Problem with re-annotating mutations in gene SEMA4A: skipping.
Problem with re-annotating mutations in gene SEMA4B: skipping.
Problem with re-annotating mutations in gene SEMA4D: skipping.
Problem with re-annotating mutations in gene SEMA4F: skipping.
Problem with re-annotating mutations in gene SEMA4G: skipping.
Problem with re-annotating mutations in gene SEMA5A: skipping.
Problem with re-annotating mutations in gene SEMA5B: skipping.
Problem with re-annotating mutations in gene SEMA6A: skipping.
Problem with re-annotating mutations in gene SEMA6B: skipping.
Problem with re-annotating mutations in gene SEMA6C: skipping.
Problem with re-annotating mutations in gene SEMA6D: skipping.
Problem with re-annotating mutations in gene SEMA7A: skipping.
Problem with re-annotating mutations in gene SEMG1: skipping.
Problem with re-annotating mutations in gene SEMG2: skipping.
Problem with re-annotating mutations in gene SENP1: skipping.
Problem with re-annotating mutations in gene SENP2: skipping.
Problem with re-annotating mutations in gene SENP5: skipping.
Problem with re-annotating mutations in gene SENP6: skipping.
Problem with re-annotating mutations in gene SENP7: skipping.
Problem with re-annotating mutations in gene SEPHS1: skipping.
Problem with re-annotating mutations in gene SEPHS2: skipping.
Problem with re-annotating mutations in gene SEPN1: skipping.
Problem with re-annotating mutations in gene SEPSECS: skipping.
Problem with re-annotating mutations in gene SEPT10: skipping.
Problem with re-annotating mutations in gene SEPT11: skipping.
Problem with re-annotating mutations in gene SEPT12: skipping.
Problem with re-annotating mutations in gene SEPT14: skipping.
Problem with re-annotating mutations in gene SEPT2: skipping.
Problem with re-annotating mutations in gene SEPT3: skipping.
Problem with re-annotating mutations in gene SEPT4: skipping.
Problem with re-annotating mutations in gene SEPT9: skipping.
Problem with re-annotating mutations in gene SERAC1: skipping.
Problem with re-annotating mutations in gene SERBP1: skipping.
Problem with re-annotating mutations in gene SERGEF: skipping.
Problem with re-annotating mutations in gene SERINC1: skipping.
Problem with re-annotating mutations in gene SERINC3: skipping.
Problem with re-annotating mutations in gene SERPINA1: skipping.
Problem with re-annotating mutations in gene SERPINA10: skipping.
Problem with re-annotating mutations in gene SERPINA11: skipping.
Problem with re-annotating mutations in gene SERPINA12: skipping.
Problem with re-annotating mutations in gene SERPINA3: skipping.
Problem with re-annotating mutations in gene SERPINA4: skipping.
11200/14661 Problem with re-annotating mutations in gene SERPINA5: skipping.
Problem with re-annotating mutations in gene SERPINA6: skipping.
Problem with re-annotating mutations in gene SERPINB10: skipping.
Problem with re-annotating mutations in gene SERPINB11: skipping.
Problem with re-annotating mutations in gene SERPINB12: skipping.
Problem with re-annotating mutations in gene SERPINB13: skipping.
Problem with re-annotating mutations in gene SERPINB2: skipping.
Problem with re-annotating mutations in gene SERPINB4: skipping.
Problem with re-annotating mutations in gene SERPINB5: skipping.
Problem with re-annotating mutations in gene SERPINB6: skipping.
Problem with re-annotating mutations in gene SERPINB7: skipping.
Problem with re-annotating mutations in gene SERPINB8: skipping.
Problem with re-annotating mutations in gene SERPINC1: skipping.
Problem with re-annotating mutations in gene SERPIND1: skipping.
Problem with re-annotating mutations in gene SERPINE1: skipping.
Problem with re-annotating mutations in gene SERPINE2: skipping.
Problem with re-annotating mutations in gene SERPINE3: skipping.
Problem with re-annotating mutations in gene SERPINF1: skipping.
Problem with re-annotating mutations in gene SERPING1: skipping.
Problem with re-annotating mutations in gene SERPINH1: skipping.
Problem with re-annotating mutations in gene SERPINI1: skipping.
Problem with re-annotating mutations in gene SERPINI2: skipping.
Problem with re-annotating mutations in gene SERTAD3: skipping.
Problem with re-annotating mutations in gene SERTAD4: skipping.
Problem with re-annotating mutations in gene SESN1: skipping.
Problem with re-annotating mutations in gene SESN2: skipping.
Problem with re-annotating mutations in gene SESN3: skipping.
Problem with re-annotating mutations in gene SESTD1: skipping.
Problem with re-annotating mutations in gene SETBP1: skipping.
Problem with re-annotating mutations in gene SETD1A: skipping.
Problem with re-annotating mutations in gene SETD2: skipping.
Problem with re-annotating mutations in gene SETD3: skipping.
Problem with re-annotating mutations in gene SETD5: skipping.
Problem with re-annotating mutations in gene SETD7: skipping.
Problem with re-annotating mutations in gene SETD8: skipping.
Problem with re-annotating mutations in gene SETDB1: skipping.
Problem with re-annotating mutations in gene SETDB2: skipping.
Problem with re-annotating mutations in gene SETX: skipping.
Problem with re-annotating mutations in gene SEZ6L: skipping.
Problem with re-annotating mutations in gene SEZ6L2: skipping.
Problem with re-annotating mutations in gene SF1: skipping.
Problem with re-annotating mutations in gene SF3A1: skipping.
Problem with re-annotating mutations in gene SF3B1: skipping.
Problem with re-annotating mutations in gene SF3B2: skipping.
Problem with re-annotating mutations in gene SF3B3: skipping.
Problem with re-annotating mutations in gene SF3B4: skipping.
Problem with re-annotating mutations in gene SFI1: skipping.
Problem with re-annotating mutations in gene SFMBT1: skipping.
Problem with re-annotating mutations in gene SFMBT2: skipping.
Problem with re-annotating mutations in gene SFPQ: skipping.
Problem with re-annotating mutations in gene SFRP1: skipping.
Problem with re-annotating mutations in gene SFRP2: skipping.
Problem with re-annotating mutations in gene SFRP4: skipping.
Problem with re-annotating mutations in gene SFRS14: skipping.
Problem with re-annotating mutations in gene SFRS15: skipping.
Problem with re-annotating mutations in gene SFRS18: skipping.
Problem with re-annotating mutations in gene SFRS2IP: skipping.
Problem with re-annotating mutations in gene SFRS4: skipping.
Problem with re-annotating mutations in gene SFT2D1: skipping.
Problem with re-annotating mutations in gene SFTPB: skipping.
Problem with re-annotating mutations in gene SFTPD: skipping.
Problem with re-annotating mutations in gene SFXN2: skipping.
Problem with re-annotating mutations in gene SFXN5: skipping.
Problem with re-annotating mutations in gene SGCB: skipping.
Problem with re-annotating mutations in gene SGCD: skipping.
Problem with re-annotating mutations in gene SGCE: skipping.
Problem with re-annotating mutations in gene SGCG: skipping.
Problem with re-annotating mutations in gene SGCZ: skipping.
Problem with re-annotating mutations in gene SGIP1: skipping.
Problem with re-annotating mutations in gene SGK1: skipping.
Problem with re-annotating mutations in gene SGK2: skipping.
Problem with re-annotating mutations in gene SGK269: skipping.
Problem with re-annotating mutations in gene SGK3: skipping.
Problem with re-annotating mutations in gene SGMS1: skipping.
Problem with re-annotating mutations in gene SGMS2: skipping.
Problem with re-annotating mutations in gene SGOL1: skipping.
Problem with re-annotating mutations in gene SGOL2: skipping.
11300/14661 Problem with re-annotating mutations in gene SGPL1: skipping.
Problem with re-annotating mutations in gene SGPP1: skipping.
Problem with re-annotating mutations in gene SGPP2: skipping.
Problem with re-annotating mutations in gene SGSM1: skipping.
Problem with re-annotating mutations in gene SGTB: skipping.
Problem with re-annotating mutations in gene SH2B1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SH2D1A: skipping.
Problem with re-annotating mutations in gene SH2D2A: skipping.
Problem with re-annotating mutations in gene SH2D3A: skipping.
Problem with re-annotating mutations in gene SH2D3C: skipping.
Problem with re-annotating mutations in gene SH2D4A: skipping.
Problem with re-annotating mutations in gene SH3BGR: skipping.
Problem with re-annotating mutations in gene SH3BP4: skipping.
Problem with re-annotating mutations in gene SH3BP5: skipping.
Problem with re-annotating mutations in gene SH3BP5L: skipping.
Problem with re-annotating mutations in gene SH3D19: skipping.
Problem with re-annotating mutations in gene SH3GL2: skipping.
Problem with re-annotating mutations in gene SH3GL3: skipping.
Problem with re-annotating mutations in gene SH3GLB1: skipping.
Problem with re-annotating mutations in gene SH3GLB2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SH3KBP1: skipping.
Problem with re-annotating mutations in gene SH3PXD2A: skipping.
Problem with re-annotating mutations in gene SH3PXD2B: skipping.
Problem with re-annotating mutations in gene SH3RF1: skipping.
Problem with re-annotating mutations in gene SH3RF3: skipping.
Problem with re-annotating mutations in gene SH3TC1: skipping.
Problem with re-annotating mutations in gene SH3TC2: skipping.
Problem with re-annotating mutations in gene SHANK1: skipping.
Problem with re-annotating mutations in gene SHANK2: skipping.
Problem with re-annotating mutations in gene SHANK3: skipping.
Problem with re-annotating mutations in gene SHBG: skipping.
Problem with re-annotating mutations in gene SHC1: skipping.
Problem with re-annotating mutations in gene SHC4: skipping.
Problem with re-annotating mutations in gene SHCBP1: skipping.
Problem with re-annotating mutations in gene SHD: skipping.
Problem with re-annotating mutations in gene SHE: skipping.
Problem with re-annotating mutations in gene SHF: skipping.
Problem with re-annotating mutations in gene SHKBP1: skipping.
Problem with re-annotating mutations in gene SHMT1: skipping.
Problem with re-annotating mutations in gene SHMT2: skipping.
Problem with re-annotating mutations in gene SHOC2: skipping.
Problem with re-annotating mutations in gene SHPK: skipping.
Problem with re-annotating mutations in gene SHPRH: skipping.
Problem with re-annotating mutations in gene SHQ1: skipping.
Problem with re-annotating mutations in gene SHROOM1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SHROOM2: skipping.
Problem with re-annotating mutations in gene SHROOM3: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SHROOM4: skipping.
Problem with re-annotating mutations in gene SI: skipping.
Problem with re-annotating mutations in gene SIAE: skipping.
Problem with re-annotating mutations in gene SIAH2: skipping.
Problem with re-annotating mutations in gene SIDT1: skipping.
Problem with re-annotating mutations in gene SIDT2: skipping.
Problem with re-annotating mutations in gene SIGLEC1: skipping.
Problem with re-annotating mutations in gene SIGLEC10: skipping.
Problem with re-annotating mutations in gene SIGLEC11: skipping.
Problem with re-annotating mutations in gene SIGLEC12: skipping.
Problem with re-annotating mutations in gene SIGLEC14: skipping.
Problem with re-annotating mutations in gene SIGLEC5: skipping.
Problem with re-annotating mutations in gene SIGLEC6: skipping.
Problem with re-annotating mutations in gene SIGLEC7: skipping.
Problem with re-annotating mutations in gene SIGLEC8: skipping.
Problem with re-annotating mutations in gene SIGLEC9: skipping.
Problem with re-annotating mutations in gene SIK2: skipping.
Problem with re-annotating mutations in gene SIK3: skipping.
Problem with re-annotating mutations in gene SIL1: skipping.
Problem with re-annotating mutations in gene SILV: skipping.
Problem with re-annotating mutations in gene SIM1: skipping.
Problem with re-annotating mutations in gene SIN3A: skipping.
Problem with re-annotating mutations in gene SIN3B: skipping.
Problem with re-annotating mutations in gene SIP1: skipping.
Problem with re-annotating mutations in gene SIPA1L1: skipping.
Problem with re-annotating mutations in gene SIPA1L2: skipping.
Problem with re-annotating mutations in gene SIPA1L3: skipping.
Problem with re-annotating mutations in gene SIRPA: skipping.
Problem with re-annotating mutations in gene SIRPB1: skipping.
11400/14661 Problem with re-annotating mutations in gene SIRPB2: skipping.
Problem with re-annotating mutations in gene SIRPD: skipping.
Problem with re-annotating mutations in gene SIRPG: skipping.
Problem with re-annotating mutations in gene SIRT1: skipping.
Problem with re-annotating mutations in gene SIRT2: skipping.
Problem with re-annotating mutations in gene SIRT4: skipping.
Problem with re-annotating mutations in gene SIRT5: skipping.
Problem with re-annotating mutations in gene SIX1: skipping.
Problem with re-annotating mutations in gene SIX2: skipping.
Problem with re-annotating mutations in gene SIX3: skipping.
Problem with re-annotating mutations in gene SIX4: skipping.
Problem with re-annotating mutations in gene SIX5: skipping.
Problem with re-annotating mutations in gene SIX6: skipping.
Problem with re-annotating mutations in gene SKA3: skipping.
Problem with re-annotating mutations in gene SKAP2: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene SKIV2L: skipping.
Problem with re-annotating mutations in gene SKIV2L2: skipping.
Problem with re-annotating mutations in gene SLA: skipping.
Problem with re-annotating mutations in gene SLAMF1: skipping.
Problem with re-annotating mutations in gene SLAMF6: skipping.
Problem with re-annotating mutations in gene SLAMF7: skipping.
Problem with re-annotating mutations in gene SLAMF8: skipping.
Problem with re-annotating mutations in gene SLAMF9: skipping.
Problem with re-annotating mutations in gene SLC10A1: skipping.
Problem with re-annotating mutations in gene SLC10A2: skipping.
Problem with re-annotating mutations in gene SLC10A5: skipping.
Problem with re-annotating mutations in gene SLC10A6: skipping.
Problem with re-annotating mutations in gene SLC10A7: skipping.
Problem with re-annotating mutations in gene SLC11A1: skipping.
Problem with re-annotating mutations in gene SLC11A2: skipping.
Problem with re-annotating mutations in gene SLC12A1: skipping.
Problem with re-annotating mutations in gene SLC12A2: skipping.
Problem with re-annotating mutations in gene SLC12A3: skipping.
Problem with re-annotating mutations in gene SLC12A5: skipping.
Problem with re-annotating mutations in gene SLC12A6: skipping.
Problem with re-annotating mutations in gene SLC12A9: skipping.
Problem with re-annotating mutations in gene SLC13A1: skipping.
Problem with re-annotating mutations in gene SLC13A2: skipping.
Problem with re-annotating mutations in gene SLC13A3: skipping.
Problem with re-annotating mutations in gene SLC13A4: skipping.
Problem with re-annotating mutations in gene SLC14A2: skipping.
Problem with re-annotating mutations in gene SLC15A1: skipping.
Problem with re-annotating mutations in gene SLC15A2: skipping.
Problem with re-annotating mutations in gene SLC15A4: skipping.
Problem with re-annotating mutations in gene SLC16A1: skipping.
Problem with re-annotating mutations in gene SLC16A12: skipping.
Problem with re-annotating mutations in gene SLC16A14: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SLC16A2: skipping.
Problem with re-annotating mutations in gene SLC16A4: skipping.
Problem with re-annotating mutations in gene SLC16A5: skipping.
Problem with re-annotating mutations in gene SLC16A6: skipping.
Problem with re-annotating mutations in gene SLC16A7: skipping.
Problem with re-annotating mutations in gene SLC16A9: skipping.
Problem with re-annotating mutations in gene SLC17A1: skipping.
Problem with re-annotating mutations in gene SLC17A2: skipping.
Problem with re-annotating mutations in gene SLC17A3: skipping.
Problem with re-annotating mutations in gene SLC17A4: skipping.
Problem with re-annotating mutations in gene SLC17A5: skipping.
Problem with re-annotating mutations in gene SLC17A6: skipping.
Problem with re-annotating mutations in gene SLC17A7: skipping.
Problem with re-annotating mutations in gene SLC17A8: skipping.
Problem with re-annotating mutations in gene SLC17A9: skipping.
Problem with re-annotating mutations in gene SLC18A1: skipping.
Problem with re-annotating mutations in gene SLC18A2: skipping.
Problem with re-annotating mutations in gene SLC18A3: skipping.
Problem with re-annotating mutations in gene SLC19A2: skipping.
Problem with re-annotating mutations in gene SLC19A3: skipping.
Problem with re-annotating mutations in gene SLC1A1: skipping.
Problem with re-annotating mutations in gene SLC1A2: skipping.
Problem with re-annotating mutations in gene SLC1A3: skipping.
Problem with re-annotating mutations in gene SLC1A5: skipping.
Problem with re-annotating mutations in gene SLC1A6: skipping.
Problem with re-annotating mutations in gene SLC1A7: skipping.
Problem with re-annotating mutations in gene SLC20A1: skipping.
Problem with re-annotating mutations in gene SLC20A2: skipping.
Problem with re-annotating mutations in gene SLC22A1: skipping.
Problem with re-annotating mutations in gene SLC22A10: skipping.
Problem with re-annotating mutations in gene SLC22A11: skipping.
Problem with re-annotating mutations in gene SLC22A13: skipping.
Problem with re-annotating mutations in gene SLC22A14: skipping.
11500/14661 Problem with re-annotating mutations in gene SLC22A15: skipping.
Problem with re-annotating mutations in gene SLC22A16: skipping.
Problem with re-annotating mutations in gene SLC22A17: skipping.
Problem with re-annotating mutations in gene SLC22A23: skipping.
Problem with re-annotating mutations in gene SLC22A25: skipping.
Problem with re-annotating mutations in gene SLC22A3: skipping.
Problem with re-annotating mutations in gene SLC22A4: skipping.
Problem with re-annotating mutations in gene SLC22A6: skipping.
Problem with re-annotating mutations in gene SLC22A7: skipping.
Problem with re-annotating mutations in gene SLC22A8: skipping.
Problem with re-annotating mutations in gene SLC22A9: skipping.
Problem with re-annotating mutations in gene SLC23A1: skipping.
Problem with re-annotating mutations in gene SLC23A2: skipping.
Problem with re-annotating mutations in gene SLC24A1: skipping.
Problem with re-annotating mutations in gene SLC24A2: skipping.
Problem with re-annotating mutations in gene SLC24A3: skipping.
Problem with re-annotating mutations in gene SLC24A4: skipping.
Problem with re-annotating mutations in gene SLC24A5: skipping.
Problem with re-annotating mutations in gene SLC24A6: skipping.
Problem with re-annotating mutations in gene SLC25A12: skipping.
Problem with re-annotating mutations in gene SLC25A13: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SLC25A14: skipping.
Problem with re-annotating mutations in gene SLC25A15: skipping.
Problem with re-annotating mutations in gene SLC25A16: skipping.
Problem with re-annotating mutations in gene SLC25A17: skipping.
Problem with re-annotating mutations in gene SLC25A18: skipping.
Problem with re-annotating mutations in gene SLC25A20: skipping.
Problem with re-annotating mutations in gene SLC25A24: skipping.
Problem with re-annotating mutations in gene SLC25A25: skipping.
Problem with re-annotating mutations in gene SLC25A28: skipping.
Problem with re-annotating mutations in gene SLC25A3: skipping.
Problem with re-annotating mutations in gene SLC25A30: skipping.
Problem with re-annotating mutations in gene SLC25A31: skipping.
Problem with re-annotating mutations in gene SLC25A36: skipping.
Problem with re-annotating mutations in gene SLC25A40: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SLC25A43: skipping.
Problem with re-annotating mutations in gene SLC25A44: skipping.
Problem with re-annotating mutations in gene SLC25A46: skipping.
Problem with re-annotating mutations in gene SLC26A10: skipping.
Problem with re-annotating mutations in gene SLC26A11: skipping.
Problem with re-annotating mutations in gene SLC26A2: skipping.
Problem with re-annotating mutations in gene SLC26A3: skipping.
Problem with re-annotating mutations in gene SLC26A4: skipping.
Problem with re-annotating mutations in gene SLC26A5: skipping.
Problem with re-annotating mutations in gene SLC26A7: skipping.
Problem with re-annotating mutations in gene SLC26A8: skipping.
Problem with re-annotating mutations in gene SLC26A9: skipping.
Problem with re-annotating mutations in gene SLC27A1: skipping.
Problem with re-annotating mutations in gene SLC27A2: skipping.
Problem with re-annotating mutations in gene SLC27A5: skipping.
Problem with re-annotating mutations in gene SLC27A6: skipping.
Problem with re-annotating mutations in gene SLC28A1: skipping.
Problem with re-annotating mutations in gene SLC28A2: skipping.
Problem with re-annotating mutations in gene SLC28A3: skipping.
Problem with re-annotating mutations in gene SLC29A3: skipping.
Problem with re-annotating mutations in gene SLC2A10: skipping.
Problem with re-annotating mutations in gene SLC2A12: skipping.
Problem with re-annotating mutations in gene SLC2A13: skipping.
Problem with re-annotating mutations in gene SLC2A14: skipping.
Problem with re-annotating mutations in gene SLC2A2: skipping.
Problem with re-annotating mutations in gene SLC2A4: skipping.
Problem with re-annotating mutations in gene SLC2A5: skipping.
Problem with re-annotating mutations in gene SLC2A7: skipping.
Problem with re-annotating mutations in gene SLC2A9: skipping.
Problem with re-annotating mutations in gene SLC30A1: skipping.
Problem with re-annotating mutations in gene SLC30A3: skipping.
Problem with re-annotating mutations in gene SLC30A4: skipping.
Problem with re-annotating mutations in gene SLC30A5: skipping.
Problem with re-annotating mutations in gene SLC30A6: skipping.
Problem with re-annotating mutations in gene SLC30A8: skipping.
Problem with re-annotating mutations in gene SLC30A9: skipping.
11600/14661 Problem with re-annotating mutations in gene SLC32A1: skipping.
Problem with re-annotating mutations in gene SLC33A1: skipping.
Problem with re-annotating mutations in gene SLC34A1: skipping.
Problem with re-annotating mutations in gene SLC34A2: skipping.
Problem with re-annotating mutations in gene SLC35A1: skipping.
Problem with re-annotating mutations in gene SLC35A3: skipping.
Problem with re-annotating mutations in gene SLC35A4: skipping.
Problem with re-annotating mutations in gene SLC35B2: skipping.
Problem with re-annotating mutations in gene SLC35B3: skipping.
Problem with re-annotating mutations in gene SLC35C2: skipping.
Problem with re-annotating mutations in gene SLC35D1: skipping.
Problem with re-annotating mutations in gene SLC35D2: skipping.
Problem with re-annotating mutations in gene SLC35D3: skipping.
Problem with re-annotating mutations in gene SLC35E1: skipping.
Problem with re-annotating mutations in gene SLC35E3: skipping.
Problem with re-annotating mutations in gene SLC35F1: skipping.
Problem with re-annotating mutations in gene SLC35F3: skipping.
Problem with re-annotating mutations in gene SLC35F4: skipping.
Problem with re-annotating mutations in gene SLC36A2: skipping.
Problem with re-annotating mutations in gene SLC36A4: skipping.
Problem with re-annotating mutations in gene SLC37A1: skipping.
Problem with re-annotating mutations in gene SLC37A2: skipping.
Problem with re-annotating mutations in gene SLC37A3: skipping.
Problem with re-annotating mutations in gene SLC37A4: skipping.
Problem with re-annotating mutations in gene SLC38A1: skipping.
Problem with re-annotating mutations in gene SLC38A11: skipping.
Problem with re-annotating mutations in gene SLC38A3: skipping.
Problem with re-annotating mutations in gene SLC38A6: skipping.
Problem with re-annotating mutations in gene SLC38A8: skipping.
Problem with re-annotating mutations in gene SLC38A9: skipping.
Problem with re-annotating mutations in gene SLC39A10: skipping.
Problem with re-annotating mutations in gene SLC39A11: skipping.
Problem with re-annotating mutations in gene SLC39A12: skipping.
Problem with re-annotating mutations in gene SLC39A14: skipping.
Problem with re-annotating mutations in gene SLC39A2: skipping.
Problem with re-annotating mutations in gene SLC39A5: skipping.
Problem with re-annotating mutations in gene SLC39A6: skipping.
Problem with re-annotating mutations in gene SLC39A7: skipping.
Problem with re-annotating mutations in gene SLC3A1: skipping.
Problem with re-annotating mutations in gene SLC3A2: skipping.
Problem with re-annotating mutations in gene SLC41A2: skipping.
Problem with re-annotating mutations in gene SLC41A3: skipping.
Problem with re-annotating mutations in gene SLC43A1: skipping.
Problem with re-annotating mutations in gene SLC43A2: skipping.
Problem with re-annotating mutations in gene SLC43A3: skipping.
Problem with re-annotating mutations in gene SLC44A1: skipping.
Problem with re-annotating mutations in gene SLC44A2: skipping.
Problem with re-annotating mutations in gene SLC44A3: skipping.
WARNING: unknown chromosome(s):
    'chr6_qbl_hap2'

Problem with re-annotating mutations in gene SLC44A4: skipping.
Problem with re-annotating mutations in gene SLC44A5: skipping.
Problem with re-annotating mutations in gene SLC45A2: skipping.
Problem with re-annotating mutations in gene SLC45A4: skipping.
Problem with re-annotating mutations in gene SLC46A3: skipping.
Problem with re-annotating mutations in gene SLC47A1: skipping.
Problem with re-annotating mutations in gene SLC4A1: skipping.
Problem with re-annotating mutations in gene SLC4A10: skipping.
Problem with re-annotating mutations in gene SLC4A11: skipping.
Problem with re-annotating mutations in gene SLC4A1AP: skipping.
Problem with re-annotating mutations in gene SLC4A3: skipping.
Problem with re-annotating mutations in gene SLC4A4: skipping.
Problem with re-annotating mutations in gene SLC4A5: skipping.
Problem with re-annotating mutations in gene SLC4A7: skipping.
Problem with re-annotating mutations in gene SLC4A8: skipping.
Problem with re-annotating mutations in gene SLC4A9: skipping.
Problem with re-annotating mutations in gene SLC5A10: skipping.
Problem with re-annotating mutations in gene SLC5A11: skipping.
Problem with re-annotating mutations in gene SLC5A12: skipping.
Problem with re-annotating mutations in gene SLC5A2: skipping.
Problem with re-annotating mutations in gene SLC5A3: skipping.
Problem with re-annotating mutations in gene SLC5A4: skipping.
Problem with re-annotating mutations in gene SLC5A5: skipping.
Problem with re-annotating mutations in gene SLC5A6: skipping.
Problem with re-annotating mutations in gene SLC5A7: skipping.
Problem with re-annotating mutations in gene SLC5A8: skipping.
Problem with re-annotating mutations in gene SLC5A9: skipping.
Problem with re-annotating mutations in gene SLC6A1: skipping.
Problem with re-annotating mutations in gene SLC6A11: skipping.
11700/14661 Problem with re-annotating mutations in gene SLC6A12: skipping.
Problem with re-annotating mutations in gene SLC6A13: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SLC6A14: skipping.
Problem with re-annotating mutations in gene SLC6A15: skipping.
Problem with re-annotating mutations in gene SLC6A16: skipping.
Problem with re-annotating mutations in gene SLC6A17: skipping.
Problem with re-annotating mutations in gene SLC6A18: skipping.
Problem with re-annotating mutations in gene SLC6A2: skipping.
Problem with re-annotating mutations in gene SLC6A20: skipping.
Problem with re-annotating mutations in gene SLC6A3: skipping.
Problem with re-annotating mutations in gene SLC6A4: skipping.
Problem with re-annotating mutations in gene SLC6A5: skipping.
Problem with re-annotating mutations in gene SLC6A6: skipping.
Problem with re-annotating mutations in gene SLC6A7: skipping.
Problem with re-annotating mutations in gene SLC6A9: skipping.
Problem with re-annotating mutations in gene SLC7A1: skipping.
Problem with re-annotating mutations in gene SLC7A10: skipping.
Problem with re-annotating mutations in gene SLC7A11: skipping.
Problem with re-annotating mutations in gene SLC7A13: skipping.
Problem with re-annotating mutations in gene SLC7A14: skipping.
Problem with re-annotating mutations in gene SLC7A2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SLC7A3: skipping.
Problem with re-annotating mutations in gene SLC7A8: skipping.
Problem with re-annotating mutations in gene SLC7A9: skipping.
Problem with re-annotating mutations in gene SLC8A1: skipping.
Problem with re-annotating mutations in gene SLC8A2: skipping.
Problem with re-annotating mutations in gene SLC8A3: skipping.
Problem with re-annotating mutations in gene SLC9A1: skipping.
Problem with re-annotating mutations in gene SLC9A10: skipping.
Problem with re-annotating mutations in gene SLC9A11: skipping.
Problem with re-annotating mutations in gene SLC9A2: skipping.
Problem with re-annotating mutations in gene SLC9A3: skipping.
Problem with re-annotating mutations in gene SLC9A3R1: skipping.
Problem with re-annotating mutations in gene SLC9A4: skipping.
Problem with re-annotating mutations in gene SLC9A5: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SLC9A6: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SLC9A7: skipping.
Problem with re-annotating mutations in gene SLC9A8: skipping.
Problem with re-annotating mutations in gene SLC9A9: skipping.
Problem with re-annotating mutations in gene SLCO1A2: skipping.
Problem with re-annotating mutations in gene SLCO1B1: skipping.
Problem with re-annotating mutations in gene SLCO1B3: skipping.
Problem with re-annotating mutations in gene SLCO1C1: skipping.
Problem with re-annotating mutations in gene SLCO2A1: skipping.
Problem with re-annotating mutations in gene SLCO2B1: skipping.
Problem with re-annotating mutations in gene SLCO3A1: skipping.
Problem with re-annotating mutations in gene SLCO4C1: skipping.
Problem with re-annotating mutations in gene SLCO5A1: skipping.
Problem with re-annotating mutations in gene SLCO6A1: skipping.
Problem with re-annotating mutations in gene SLFN11: skipping.
Problem with re-annotating mutations in gene SLFN12: skipping.
Problem with re-annotating mutations in gene SLFN13: skipping.
Problem with re-annotating mutations in gene SLFN5: skipping.
Problem with re-annotating mutations in gene SLIT1: skipping.
Problem with re-annotating mutations in gene SLIT2: skipping.
Problem with re-annotating mutations in gene SLIT3: skipping.
Problem with re-annotating mutations in gene SLITRK1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SLITRK2: skipping.
Problem with re-annotating mutations in gene SLITRK3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SLITRK4: skipping.
Problem with re-annotating mutations in gene SLITRK5: skipping.
Problem with re-annotating mutations in gene SLITRK6: skipping.
Problem with re-annotating mutations in gene SLK: skipping.
Problem with re-annotating mutations in gene SLTM: skipping.
Problem with re-annotating mutations in gene SLU7: skipping.
Problem with re-annotating mutations in gene SMAD1: skipping.
Problem with re-annotating mutations in gene SMAD2: skipping.
Problem with re-annotating mutations in gene SMAD3: skipping.
Problem with re-annotating mutations in gene SMAD4: skipping.
Problem with re-annotating mutations in gene SMAD9: skipping.
Problem with re-annotating mutations in gene SMAP1: skipping.
Problem with re-annotating mutations in gene SMAP2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SMARCA1: skipping.
Problem with re-annotating mutations in gene SMARCA2: skipping.
Problem with re-annotating mutations in gene SMARCA4: skipping.
Problem with re-annotating mutations in gene SMARCA5: skipping.
Problem with re-annotating mutations in gene SMARCAD1: skipping.
Problem with re-annotating mutations in gene SMARCAL1: skipping.
Problem with re-annotating mutations in gene SMARCB1: skipping.
Problem with re-annotating mutations in gene SMARCC1: skipping.
Problem with re-annotating mutations in gene SMARCC2: skipping.
Problem with re-annotating mutations in gene SMARCD1: skipping.
Problem with re-annotating mutations in gene SMARCD3: skipping.
Problem with re-annotating mutations in gene SMARCE1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SMC1A: skipping.
Problem with re-annotating mutations in gene SMC1B: skipping.
Problem with re-annotating mutations in gene SMC2: skipping.
Problem with re-annotating mutations in gene SMC3: skipping.
Problem with re-annotating mutations in gene SMC4: skipping.
Problem with re-annotating mutations in gene SMC5: skipping.
11800/14661 Problem with re-annotating mutations in gene SMCHD1: skipping.
Problem with re-annotating mutations in gene SMEK1: skipping.
Problem with re-annotating mutations in gene SMEK2: skipping.
Problem with re-annotating mutations in gene SMG1: skipping.
Problem with re-annotating mutations in gene SMG5: skipping.
Problem with re-annotating mutations in gene SMG6: skipping.
Problem with re-annotating mutations in gene SMG7: skipping.
Problem with re-annotating mutations in gene SMOC1: skipping.
Problem with re-annotating mutations in gene SMOC2: skipping.
Problem with re-annotating mutations in gene SMOX: skipping.
Problem with re-annotating mutations in gene SMPD1: skipping.
Problem with re-annotating mutations in gene SMPD3: skipping.
Problem with re-annotating mutations in gene SMPDL3A: skipping.
Problem with re-annotating mutations in gene SMPDL3B: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SMS: skipping.
Problem with re-annotating mutations in gene SMTN: skipping.
Problem with re-annotating mutations in gene SMTNL1: skipping.
Problem with re-annotating mutations in gene SMUG1: skipping.
Problem with re-annotating mutations in gene SMURF1: skipping.
Problem with re-annotating mutations in gene SMURF2: skipping.
Problem with re-annotating mutations in gene SMYD1: skipping.
Problem with re-annotating mutations in gene SMYD3: skipping.
Problem with re-annotating mutations in gene SMYD5: skipping.
Problem with re-annotating mutations in gene SNAI2: skipping.
Problem with re-annotating mutations in gene SNAP29: skipping.
Problem with re-annotating mutations in gene SNAP47: skipping.
Problem with re-annotating mutations in gene SNAP91: skipping.
Problem with re-annotating mutations in gene SNAPC1: skipping.
Problem with re-annotating mutations in gene SNAPC2: skipping.
Problem with re-annotating mutations in gene SNAPC3: skipping.
Problem with re-annotating mutations in gene SNAPC4: skipping.
Problem with re-annotating mutations in gene SNCAIP: skipping.
Problem with re-annotating mutations in gene SND1: skipping.
Problem with re-annotating mutations in gene SNED1: skipping.
Problem with re-annotating mutations in gene SNIP1: skipping.
Problem with re-annotating mutations in gene SNRK: skipping.
Problem with re-annotating mutations in gene SNRNP200: skipping.
Problem with re-annotating mutations in gene SNRNP27: skipping.
Problem with re-annotating mutations in gene SNRNP70: skipping.
Problem with re-annotating mutations in gene SNRPE: skipping.
Problem with re-annotating mutations in gene SNRPN: skipping.
Problem with re-annotating mutations in gene SNTG1: skipping.
Problem with re-annotating mutations in gene SNTG2: skipping.
Problem with re-annotating mutations in gene SNUPN: skipping.
Problem with re-annotating mutations in gene SNW1: skipping.
Problem with re-annotating mutations in gene SNX1: skipping.
Problem with re-annotating mutations in gene SNX11: skipping.
Problem with re-annotating mutations in gene SNX13: skipping.
Problem with re-annotating mutations in gene SNX14: skipping.
Problem with re-annotating mutations in gene SNX17: skipping.
Problem with re-annotating mutations in gene SNX19: skipping.
Problem with re-annotating mutations in gene SNX2: skipping.
Problem with re-annotating mutations in gene SNX22: skipping.
Problem with re-annotating mutations in gene SNX25: skipping.
Problem with re-annotating mutations in gene SNX27: skipping.
Problem with re-annotating mutations in gene SNX31: skipping.
Problem with re-annotating mutations in gene SNX32: skipping.
Problem with re-annotating mutations in gene SNX33: skipping.
Problem with re-annotating mutations in gene SNX7: skipping.
Problem with re-annotating mutations in gene SNX9: skipping.
Problem with re-annotating mutations in gene SOBP: skipping.
11900/14661 Problem with re-annotating mutations in gene SOCS2: skipping.
Problem with re-annotating mutations in gene SOCS5: skipping.
Problem with re-annotating mutations in gene SOCS6: skipping.
Problem with re-annotating mutations in gene SOD2: skipping.
Problem with re-annotating mutations in gene SOHLH2: skipping.
Problem with re-annotating mutations in gene SON: skipping.
Problem with re-annotating mutations in gene SORBS1: skipping.
Problem with re-annotating mutations in gene SORBS2: skipping.
Problem with re-annotating mutations in gene SORBS3: skipping.
Problem with re-annotating mutations in gene SORCS1: skipping.
Problem with re-annotating mutations in gene SORCS2: skipping.
Problem with re-annotating mutations in gene SORCS3: skipping.
Problem with re-annotating mutations in gene SORD: skipping.
Problem with re-annotating mutations in gene SORL1: skipping.
Problem with re-annotating mutations in gene SORT1: skipping.
Problem with re-annotating mutations in gene SOS1: skipping.
Problem with re-annotating mutations in gene SOS2: skipping.
Problem with re-annotating mutations in gene SOST: skipping.
Problem with re-annotating mutations in gene SOX10: skipping.
Problem with re-annotating mutations in gene SOX13: skipping.
Problem with re-annotating mutations in gene SOX14: skipping.
Problem with re-annotating mutations in gene SOX17: skipping.
Problem with re-annotating mutations in gene SOX2: skipping.
Problem with re-annotating mutations in gene SOX21: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SOX3: skipping.
Problem with re-annotating mutations in gene SOX30: skipping.
Problem with re-annotating mutations in gene SOX5: skipping.
Problem with re-annotating mutations in gene SOX6: skipping.
Problem with re-annotating mutations in gene SOX7: skipping.
Problem with re-annotating mutations in gene SOX9: skipping.
Problem with re-annotating mutations in gene SP1: skipping.
Problem with re-annotating mutations in gene SP100: skipping.
Problem with re-annotating mutations in gene SP140: skipping.
Problem with re-annotating mutations in gene SP140L: skipping.
Problem with re-annotating mutations in gene SP3: skipping.
Problem with re-annotating mutations in gene SP4: skipping.
Problem with re-annotating mutations in gene SP7: skipping.
Problem with re-annotating mutations in gene SP8: skipping.
Problem with re-annotating mutations in gene SPACA1: skipping.
Problem with re-annotating mutations in gene SPACA3: skipping.
Problem with re-annotating mutations in gene SPAG1: skipping.
Problem with re-annotating mutations in gene SPAG11B: skipping.
Problem with re-annotating mutations in gene SPAG16: skipping.
Problem with re-annotating mutations in gene SPAG17: skipping.
Problem with re-annotating mutations in gene SPAG4: skipping.
Problem with re-annotating mutations in gene SPAG5: skipping.
Problem with re-annotating mutations in gene SPAG6: skipping.
Problem with re-annotating mutations in gene SPAG8: skipping.
Problem with re-annotating mutations in gene SPAG9: skipping.
Problem with re-annotating mutations in gene SPAM1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SPANXC: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SPANXN4: skipping.
Problem with re-annotating mutations in gene SPARC: skipping.
Problem with re-annotating mutations in gene SPARCL1: skipping.
Problem with re-annotating mutations in gene SPAST: skipping.
Problem with re-annotating mutations in gene SPATA1: skipping.
Problem with re-annotating mutations in gene SPATA13: skipping.
Problem with re-annotating mutations in gene SPATA16: skipping.
Problem with re-annotating mutations in gene SPATA17: skipping.
Problem with re-annotating mutations in gene SPATA18: skipping.
Problem with re-annotating mutations in gene SPATA19: skipping.
Problem with re-annotating mutations in gene SPATA2: skipping.
Problem with re-annotating mutations in gene SPATA20: skipping.
Problem with re-annotating mutations in gene SPATA22: skipping.
Problem with re-annotating mutations in gene SPATA4: skipping.
Problem with re-annotating mutations in gene SPATA5: skipping.
Problem with re-annotating mutations in gene SPATA5L1: skipping.
Problem with re-annotating mutations in gene SPATA6: skipping.
Problem with re-annotating mutations in gene SPATA8: skipping.
Problem with re-annotating mutations in gene SPATA9: skipping.
Problem with re-annotating mutations in gene SPATS2: skipping.
Problem with re-annotating mutations in gene SPDYA: skipping.
Problem with re-annotating mutations in gene SPDYC: skipping.
Problem with re-annotating mutations in gene SPDYE1: skipping.
Problem with re-annotating mutations in gene SPEF2: skipping.
Problem with re-annotating mutations in gene SPEG: skipping.
Problem with re-annotating mutations in gene SPEN: skipping.
Problem with re-annotating mutations in gene SPERT: skipping.
Problem with re-annotating mutations in gene SPESP1: skipping.
12000/14661 Problem with re-annotating mutations in gene SPG11: skipping.
Problem with re-annotating mutations in gene SPG20: skipping.
Problem with re-annotating mutations in gene SPG7: skipping.
Problem with re-annotating mutations in gene SPHKAP: skipping.
Problem with re-annotating mutations in gene SPI1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SPIN3: skipping.
Problem with re-annotating mutations in gene SPINK5: skipping.
Problem with re-annotating mutations in gene SPINK7: skipping.
Problem with re-annotating mutations in gene SPIRE1: skipping.
Problem with re-annotating mutations in gene SPN: skipping.
Problem with re-annotating mutations in gene SPNS1: skipping.
Problem with re-annotating mutations in gene SPNS2: skipping.
Problem with re-annotating mutations in gene SPNS3: skipping.
Problem with re-annotating mutations in gene SPOCD1: skipping.
Problem with re-annotating mutations in gene SPOCK1: skipping.
Problem with re-annotating mutations in gene SPOCK3: skipping.
Problem with re-annotating mutations in gene SPON1: skipping.
Problem with re-annotating mutations in gene SPON2: skipping.
Problem with re-annotating mutations in gene SPOP: skipping.
Problem with re-annotating mutations in gene SPOPL: skipping.
Problem with re-annotating mutations in gene SPPL2A: skipping.
Problem with re-annotating mutations in gene SPPL2B: skipping.
Problem with re-annotating mutations in gene SPPL3: skipping.
Problem with re-annotating mutations in gene SPRED1: skipping.
Problem with re-annotating mutations in gene SPRED2: skipping.
Problem with re-annotating mutations in gene SPRR2E: skipping.
Problem with re-annotating mutations in gene SPRR3: skipping.
Problem with re-annotating mutations in gene SPRY1: skipping.
Problem with re-annotating mutations in gene SPRY4: skipping.
Problem with re-annotating mutations in gene SPRYD5: skipping.
Problem with re-annotating mutations in gene SPTA1: skipping.
Problem with re-annotating mutations in gene SPTAN1: skipping.
Problem with re-annotating mutations in gene SPTB: skipping.
Problem with re-annotating mutations in gene SPTBN1: skipping.
Problem with re-annotating mutations in gene SPTBN2: skipping.
Problem with re-annotating mutations in gene SPTBN4: skipping.
Problem with re-annotating mutations in gene SPTBN5: skipping.
Problem with re-annotating mutations in gene SPTLC1: skipping.
Problem with re-annotating mutations in gene SPTLC2: skipping.
Problem with re-annotating mutations in gene SPTLC3: skipping.
Problem with re-annotating mutations in gene SPTY2D1: skipping.
Problem with re-annotating mutations in gene SPZ1: skipping.
Problem with re-annotating mutations in gene SQLE: skipping.
Problem with re-annotating mutations in gene SR140: skipping.
Problem with re-annotating mutations in gene SRBD1: skipping.
Problem with re-annotating mutations in gene SRC: skipping.
Problem with re-annotating mutations in gene SRCAP: skipping.
Problem with re-annotating mutations in gene SRCRB4D: skipping.
Problem with re-annotating mutations in gene SRD5A2: skipping.
Problem with re-annotating mutations in gene SREBF2: skipping.
Problem with re-annotating mutations in gene SRF: skipping.
Problem with re-annotating mutations in gene SRFBP1: skipping.
Problem with re-annotating mutations in gene SRGAP1: skipping.
Problem with re-annotating mutations in gene SRGAP2: skipping.
Problem with re-annotating mutations in gene SRGAP3: skipping.
Problem with re-annotating mutations in gene SRP54: skipping.
Problem with re-annotating mutations in gene SRP68: skipping.
Problem with re-annotating mutations in gene SRP72: skipping.
Problem with re-annotating mutations in gene SRPK1: skipping.
Problem with re-annotating mutations in gene SRPK2: skipping.
Problem with re-annotating mutations in gene SRPRB: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SRPX: skipping.
Problem with re-annotating mutations in gene SRR: skipping.
Problem with re-annotating mutations in gene SRRM1: skipping.
12100/14661 Problem with re-annotating mutations in gene SRRM2: skipping.
Problem with re-annotating mutations in gene SRRM4: skipping.
Problem with re-annotating mutations in gene SRRT: skipping.
Problem with re-annotating mutations in gene SS18: skipping.
Problem with re-annotating mutations in gene SSB: skipping.
Problem with re-annotating mutations in gene SSBP1: skipping.
Problem with re-annotating mutations in gene SSBP2: skipping.
Problem with re-annotating mutations in gene SSFA2: skipping.
Problem with re-annotating mutations in gene SSH1: skipping.
Problem with re-annotating mutations in gene SSH2: skipping.
Problem with re-annotating mutations in gene SSPO: skipping.
Problem with re-annotating mutations in gene SSR1: skipping.
Problem with re-annotating mutations in gene SSRP1: skipping.
Problem with re-annotating mutations in gene SSTR1: skipping.
Problem with re-annotating mutations in gene SSTR2: skipping.
Problem with re-annotating mutations in gene SSTR4: skipping.
Problem with re-annotating mutations in gene SSU72: skipping.
Problem with re-annotating mutations in gene SSX2IP: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SSX5: skipping.
Problem with re-annotating mutations in gene ST14: skipping.
Problem with re-annotating mutations in gene ST18: skipping.
Problem with re-annotating mutations in gene ST3GAL3: skipping.
Problem with re-annotating mutations in gene ST3GAL4: skipping.
Problem with re-annotating mutations in gene ST3GAL6: skipping.
Problem with re-annotating mutations in gene ST5: skipping.
Problem with re-annotating mutations in gene ST6GAL2: skipping.
Problem with re-annotating mutations in gene ST6GALNAC1: skipping.
Problem with re-annotating mutations in gene ST6GALNAC2: skipping.
Problem with re-annotating mutations in gene ST6GALNAC3: skipping.
Problem with re-annotating mutations in gene ST6GALNAC4: skipping.
Problem with re-annotating mutations in gene ST6GALNAC5: skipping.
Problem with re-annotating mutations in gene ST6GALNAC6: skipping.
Problem with re-annotating mutations in gene ST7: skipping.
Problem with re-annotating mutations in gene ST7L: skipping.
Problem with re-annotating mutations in gene ST8SIA1: skipping.
Problem with re-annotating mutations in gene ST8SIA2: skipping.
Problem with re-annotating mutations in gene ST8SIA3: skipping.
Problem with re-annotating mutations in gene ST8SIA4: skipping.
Problem with re-annotating mutations in gene ST8SIA5: skipping.
Problem with re-annotating mutations in gene ST8SIA6: skipping.
Problem with re-annotating mutations in gene STAB1: skipping.
Problem with re-annotating mutations in gene STAB2: skipping.
Problem with re-annotating mutations in gene STAC: skipping.
Problem with re-annotating mutations in gene STAG1: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene STAG2: skipping.
Problem with re-annotating mutations in gene STAG3: skipping.
Problem with re-annotating mutations in gene STAM: skipping.
Problem with re-annotating mutations in gene STAM2: skipping.
Problem with re-annotating mutations in gene STAMBP: skipping.
Problem with re-annotating mutations in gene STAMBPL1: skipping.
Problem with re-annotating mutations in gene STAP2: skipping.
Problem with re-annotating mutations in gene STARD13: skipping.
Problem with re-annotating mutations in gene STARD3NL: skipping.
Problem with re-annotating mutations in gene STARD4: skipping.
Problem with re-annotating mutations in gene STARD6: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene STARD8: skipping.
Problem with re-annotating mutations in gene STAT1: skipping.
Problem with re-annotating mutations in gene STAT2: skipping.
Problem with re-annotating mutations in gene STAT3: skipping.
Problem with re-annotating mutations in gene STAT4: skipping.
Problem with re-annotating mutations in gene STAT5B: skipping.
Problem with re-annotating mutations in gene STAT6: skipping.
Problem with re-annotating mutations in gene STAU2: skipping.
Problem with re-annotating mutations in gene STBD1: skipping.
Problem with re-annotating mutations in gene STC1: skipping.
Problem with re-annotating mutations in gene STC2: skipping.
Problem with re-annotating mutations in gene STEAP1: skipping.
Problem with re-annotating mutations in gene STEAP2: skipping.
Problem with re-annotating mutations in gene STEAP4: skipping.
Problem with re-annotating mutations in gene STIL: skipping.
Problem with re-annotating mutations in gene STIM1: skipping.
Problem with re-annotating mutations in gene STIM2: skipping.
Problem with re-annotating mutations in gene STIP1: skipping.
Problem with re-annotating mutations in gene STK10: skipping.
Problem with re-annotating mutations in gene STK16: skipping.
WARNING: unknown chromosome(s):
    'chr6_qbl_hap2'

Problem with re-annotating mutations in gene STK19: skipping.
12200/14661 Problem with re-annotating mutations in gene STK24: skipping.
Problem with re-annotating mutations in gene STK3: skipping.
Problem with re-annotating mutations in gene STK31: skipping.
Problem with re-annotating mutations in gene STK32B: skipping.
Problem with re-annotating mutations in gene STK33: skipping.
Problem with re-annotating mutations in gene STK36: skipping.
Problem with re-annotating mutations in gene STK38: skipping.
Problem with re-annotating mutations in gene STK38L: skipping.
Problem with re-annotating mutations in gene STK39: skipping.
Problem with re-annotating mutations in gene STK4: skipping.
Problem with re-annotating mutations in gene STK40: skipping.
Problem with re-annotating mutations in gene STMN1: skipping.
Problem with re-annotating mutations in gene STMN4: skipping.
Problem with re-annotating mutations in gene STOML2: skipping.
Problem with re-annotating mutations in gene STOML3: skipping.
Problem with re-annotating mutations in gene STON1-GTF2A1L: skipping.
Problem with re-annotating mutations in gene STON2: skipping.
Problem with re-annotating mutations in gene STOX1: skipping.
Problem with re-annotating mutations in gene STOX2: skipping.
Problem with re-annotating mutations in gene STRA6: skipping.
Problem with re-annotating mutations in gene STRA8: skipping.
Problem with re-annotating mutations in gene STRADA: skipping.
Problem with re-annotating mutations in gene STRADB: skipping.
Problem with re-annotating mutations in gene STRAP: skipping.
Problem with re-annotating mutations in gene STRBP: skipping.
Problem with re-annotating mutations in gene STRC: skipping.
Problem with re-annotating mutations in gene STRN: skipping.
Problem with re-annotating mutations in gene STRN3: skipping.
Problem with re-annotating mutations in gene STRN4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene STS: skipping.
Problem with re-annotating mutations in gene STT3A: skipping.
Problem with re-annotating mutations in gene STT3B: skipping.
Problem with re-annotating mutations in gene STX11: skipping.
Problem with re-annotating mutations in gene STX12: skipping.
Problem with re-annotating mutations in gene STX16: skipping.
Problem with re-annotating mutations in gene STX19: skipping.
Problem with re-annotating mutations in gene STX1A: skipping.
Problem with re-annotating mutations in gene STX1B: skipping.
Problem with re-annotating mutations in gene STX2: skipping.
Problem with re-annotating mutations in gene STX3: skipping.
Problem with re-annotating mutations in gene STX4: skipping.
Problem with re-annotating mutations in gene STX5: skipping.
Problem with re-annotating mutations in gene STX7: skipping.
Problem with re-annotating mutations in gene STX8: skipping.
Problem with re-annotating mutations in gene STXBP1: skipping.
Problem with re-annotating mutations in gene STXBP2: skipping.
Problem with re-annotating mutations in gene STXBP4: skipping.
Problem with re-annotating mutations in gene STXBP5: skipping.
Problem with re-annotating mutations in gene STXBP5L: skipping.
Problem with re-annotating mutations in gene STXBP6: skipping.
Problem with re-annotating mutations in gene STYX: skipping.
Problem with re-annotating mutations in gene STYXL1: skipping.
Problem with re-annotating mutations in gene SUCLA2: skipping.
Problem with re-annotating mutations in gene SUCLG1: skipping.
Problem with re-annotating mutations in gene SUCNR1: skipping.
Problem with re-annotating mutations in gene SUFU: skipping.
Problem with re-annotating mutations in gene SULF1: skipping.
Problem with re-annotating mutations in gene SULF2: skipping.
Problem with re-annotating mutations in gene SULT1A1: skipping.
Problem with re-annotating mutations in gene SULT1B1: skipping.
Problem with re-annotating mutations in gene SULT1C2: skipping.
Problem with re-annotating mutations in gene SULT1C4: skipping.
Problem with re-annotating mutations in gene SULT1E1: skipping.
Problem with re-annotating mutations in gene SULT2A1: skipping.
Problem with re-annotating mutations in gene SULT6B1: skipping.
Problem with re-annotating mutations in gene SUMF1: skipping.
Problem with re-annotating mutations in gene SUOX: skipping.
Problem with re-annotating mutations in gene SUPT16H: skipping.
Problem with re-annotating mutations in gene SUPT3H: skipping.
Problem with re-annotating mutations in gene SUPT4H1: skipping.
Problem with re-annotating mutations in gene SUPT5H: skipping.
Problem with re-annotating mutations in gene SUPT6H: skipping.
Problem with re-annotating mutations in gene SUPT7L: skipping.
Problem with re-annotating mutations in gene SUPV3L1: skipping.
Problem with re-annotating mutations in gene SURF6: skipping.
Problem with re-annotating mutations in gene SUSD1: skipping.
12300/14661 Problem with re-annotating mutations in gene SUSD3: skipping.
Problem with re-annotating mutations in gene SUSD4: skipping.
Problem with re-annotating mutations in gene SUSD5: skipping.
Problem with re-annotating mutations in gene SUV39H2: skipping.
Problem with re-annotating mutations in gene SUV420H1: skipping.
Problem with re-annotating mutations in gene SUZ12: skipping.
Problem with re-annotating mutations in gene SV2A: skipping.
Problem with re-annotating mutations in gene SV2B: skipping.
Problem with re-annotating mutations in gene SV2C: skipping.
Problem with re-annotating mutations in gene SVEP1: skipping.
Problem with re-annotating mutations in gene SVIL: skipping.
Problem with re-annotating mutations in gene SVOPL: skipping.
Problem with re-annotating mutations in gene SWAP70: skipping.
Problem with re-annotating mutations in gene SYCE1: skipping.
Problem with re-annotating mutations in gene SYCE2: skipping.
Problem with re-annotating mutations in gene SYCP1: skipping.
Problem with re-annotating mutations in gene SYCP2: skipping.
Problem with re-annotating mutations in gene SYCP2L: skipping.
Problem with re-annotating mutations in gene SYDE1: skipping.
Problem with re-annotating mutations in gene SYDE2: skipping.
Problem with re-annotating mutations in gene SYK: skipping.
Problem with re-annotating mutations in gene SYMPK: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SYN1: skipping.
Problem with re-annotating mutations in gene SYN2: skipping.
Problem with re-annotating mutations in gene SYN3: skipping.
Problem with re-annotating mutations in gene SYNC: skipping.
Problem with re-annotating mutations in gene SYNCRIP: skipping.
<SYNE1 muts: Problem with re-annotating mutations in gene SYNE1: skipping.
Problem with re-annotating mutations in gene SYNE2: skipping.
Problem with re-annotating mutations in gene SYNGAP1: skipping.
Problem with re-annotating mutations in gene SYNGR4: skipping.
Problem with re-annotating mutations in gene SYNJ1: skipping.
Problem with re-annotating mutations in gene SYNJ2: skipping.
Problem with re-annotating mutations in gene SYNM: skipping.
Problem with re-annotating mutations in gene SYNPO: skipping.
Problem with re-annotating mutations in gene SYNPO2: skipping.
Problem with re-annotating mutations in gene SYNPO2L: skipping.
Problem with re-annotating mutations in gene SYNRG: skipping.
Problem with re-annotating mutations in gene SYPL1: skipping.
Problem with re-annotating mutations in gene SYPL2: skipping.
Problem with re-annotating mutations in gene SYT10: skipping.
Problem with re-annotating mutations in gene SYT12: skipping.
Problem with re-annotating mutations in gene SYT14: skipping.
Problem with re-annotating mutations in gene SYT15: skipping.
Problem with re-annotating mutations in gene SYT16: skipping.
Problem with re-annotating mutations in gene SYT17: skipping.
Problem with re-annotating mutations in gene SYT2: skipping.
Problem with re-annotating mutations in gene SYT3: skipping.
Problem with re-annotating mutations in gene SYT4: skipping.
Problem with re-annotating mutations in gene SYT5: skipping.
Problem with re-annotating mutations in gene SYT6: skipping.
Problem with re-annotating mutations in gene SYT7: skipping.
Problem with re-annotating mutations in gene SYT9: skipping.
Problem with re-annotating mutations in gene SYTL1: skipping.
Problem with re-annotating mutations in gene SYTL2: skipping.
Problem with re-annotating mutations in gene SYTL3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SYTL4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene SYTL5: skipping.
Problem with re-annotating mutations in gene SYVN1: skipping.
Problem with re-annotating mutations in gene T: skipping.
Problem with re-annotating mutations in gene TAAR1: skipping.
Problem with re-annotating mutations in gene TAAR2: skipping.
Problem with re-annotating mutations in gene TAAR5: skipping.
Problem with re-annotating mutations in gene TAAR6: skipping.
Problem with re-annotating mutations in gene TAAR8: skipping.
Problem with re-annotating mutations in gene TAAR9: skipping.
Problem with re-annotating mutations in gene TAC1: skipping.
Problem with re-annotating mutations in gene TACC1: skipping.
Problem with re-annotating mutations in gene TACC2: skipping.
Problem with re-annotating mutations in gene TACR1: skipping.
Problem with re-annotating mutations in gene TACR3: skipping.
Problem with re-annotating mutations in gene TADA3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TAF1: skipping.
Problem with re-annotating mutations in gene TAF1A: skipping.
Problem with re-annotating mutations in gene TAF1C: skipping.
Problem with re-annotating mutations in gene TAF1L: skipping.
Problem with re-annotating mutations in gene TAF2: skipping.
Problem with re-annotating mutations in gene TAF3: skipping.
Problem with re-annotating mutations in gene TAF4: skipping.
12400/14661 Problem with re-annotating mutations in gene TAF4B: skipping.
Problem with re-annotating mutations in gene TAF5: skipping.
Problem with re-annotating mutations in gene TAF5L: skipping.
Problem with re-annotating mutations in gene TAF6: skipping.
Problem with re-annotating mutations in gene TAF6L: skipping.
Problem with re-annotating mutations in gene TAF7: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TAF7L: skipping.
Problem with re-annotating mutations in gene TAGAP: skipping.
Problem with re-annotating mutations in gene TAGLN: skipping.
Problem with re-annotating mutations in gene TAGLN2: skipping.
Problem with re-annotating mutations in gene TALDO1: skipping.
Problem with re-annotating mutations in gene TANC1: skipping.
Problem with re-annotating mutations in gene TANC2: skipping.
Problem with re-annotating mutations in gene TANK: skipping.
Problem with re-annotating mutations in gene TAOK1: skipping.
Problem with re-annotating mutations in gene TAOK2: skipping.
Problem with re-annotating mutations in gene TAOK3: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene TAP1: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene TAP2: skipping.
WARNING: unknown chromosome(s):
    'chr6_qbl_hap2'

Problem with re-annotating mutations in gene TAPBP: skipping.
Problem with re-annotating mutations in gene TAPT1: skipping.
Problem with re-annotating mutations in gene TARBP1: skipping.
Problem with re-annotating mutations in gene TARBP2: skipping.
Problem with re-annotating mutations in gene TARP: skipping.
Problem with re-annotating mutations in gene TARS: skipping.
Problem with re-annotating mutations in gene TARS2: skipping.
Problem with re-annotating mutations in gene TARSL2: skipping.
Problem with re-annotating mutations in gene TAS1R1: skipping.
Problem with re-annotating mutations in gene TAS1R2: skipping.
Problem with re-annotating mutations in gene TAS2R1: skipping.
Problem with re-annotating mutations in gene TAS2R10: skipping.
Problem with re-annotating mutations in gene TAS2R13: skipping.
Problem with re-annotating mutations in gene TAS2R16: skipping.
Problem with re-annotating mutations in gene TAS2R20: skipping.
Problem with re-annotating mutations in gene TAS2R30: skipping.
Problem with re-annotating mutations in gene TAS2R38: skipping.
Problem with re-annotating mutations in gene TAS2R39: skipping.
Problem with re-annotating mutations in gene TAS2R4: skipping.
Problem with re-annotating mutations in gene TAS2R46: skipping.
Problem with re-annotating mutations in gene TAS2R5: skipping.
Problem with re-annotating mutations in gene TAS2R50: skipping.
Problem with re-annotating mutations in gene TAS2R60: skipping.
Problem with re-annotating mutations in gene TAS2R8: skipping.
Problem with re-annotating mutations in gene TAS2R9: skipping.
Problem with re-annotating mutations in gene TASP1: skipping.
Problem with re-annotating mutations in gene TAT: skipping.
Problem with re-annotating mutations in gene TATDN1: skipping.
Problem with re-annotating mutations in gene TATDN2: skipping.
Problem with re-annotating mutations in gene TAX1BP1: skipping.
Problem with re-annotating mutations in gene TBC1D1: skipping.
Problem with re-annotating mutations in gene TBC1D10A: skipping.
Problem with re-annotating mutations in gene TBC1D10B: skipping.
Problem with re-annotating mutations in gene TBC1D10C: skipping.
Problem with re-annotating mutations in gene TBC1D12: skipping.
Problem with re-annotating mutations in gene TBC1D14: skipping.
Problem with re-annotating mutations in gene TBC1D15: skipping.
Problem with re-annotating mutations in gene TBC1D16: skipping.
Problem with re-annotating mutations in gene TBC1D17: skipping.
Problem with re-annotating mutations in gene TBC1D2: skipping.
Problem with re-annotating mutations in gene TBC1D20: skipping.
Problem with re-annotating mutations in gene TBC1D22A: skipping.
Problem with re-annotating mutations in gene TBC1D23: skipping.
Problem with re-annotating mutations in gene TBC1D24: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TBC1D25: skipping.
Problem with re-annotating mutations in gene TBC1D28: skipping.
Problem with re-annotating mutations in gene TBC1D2B: skipping.
Problem with re-annotating mutations in gene TBC1D4: skipping.
Problem with re-annotating mutations in gene TBC1D5: skipping.
Problem with re-annotating mutations in gene TBC1D7: skipping.
Problem with re-annotating mutations in gene TBC1D8: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TBC1D8B: skipping.
Problem with re-annotating mutations in gene TBC1D9: skipping.
Problem with re-annotating mutations in gene TBC1D9B: skipping.
Problem with re-annotating mutations in gene TBCA: skipping.
Problem with re-annotating mutations in gene TBCC: skipping.
Problem with re-annotating mutations in gene TBCCD1: skipping.
Problem with re-annotating mutations in gene TBCD: skipping.
Problem with re-annotating mutations in gene TBCE: skipping.
Problem with re-annotating mutations in gene TBCEL: skipping.
Problem with re-annotating mutations in gene TBK1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TBL1X: skipping.
Problem with re-annotating mutations in gene TBL1XR1: skipping.
12500/14661 Problem with re-annotating mutations in gene TBL2: skipping.
Problem with re-annotating mutations in gene TBR1: skipping.
Problem with re-annotating mutations in gene TBX15: skipping.
Problem with re-annotating mutations in gene TBX18: skipping.
Problem with re-annotating mutations in gene TBX19: skipping.
Problem with re-annotating mutations in gene TBX21: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TBX22: skipping.
Problem with re-annotating mutations in gene TBX3: skipping.
Problem with re-annotating mutations in gene TBX4: skipping.
Problem with re-annotating mutations in gene TBX5: skipping.
Problem with re-annotating mutations in gene TBXAS1: skipping.
Problem with re-annotating mutations in gene TC2N: skipping.
Problem with re-annotating mutations in gene TCEA1: skipping.
Problem with re-annotating mutations in gene TCEA2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TCEAL4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TCEANC: skipping.
Problem with re-annotating mutations in gene TCEB3: skipping.
Problem with re-annotating mutations in gene TCEB3B: skipping.
Problem with re-annotating mutations in gene TCERG1: skipping.
Problem with re-annotating mutations in gene TCERG1L: skipping.
Problem with re-annotating mutations in gene TCF12: skipping.
Problem with re-annotating mutations in gene TCF20: skipping.
Problem with re-annotating mutations in gene TCF4: skipping.
Problem with re-annotating mutations in gene TCF7: skipping.
Problem with re-annotating mutations in gene TCF7L1: skipping.
Problem with re-annotating mutations in gene TCF7L2: skipping.
Problem with re-annotating mutations in gene TCFL5: skipping.
Problem with re-annotating mutations in gene TCHH: skipping.
Problem with re-annotating mutations in gene TCHHL1: skipping.
Problem with re-annotating mutations in gene TCHP: skipping.
Problem with re-annotating mutations in gene TCIRG1: skipping.
Problem with re-annotating mutations in gene TCL1A: skipping.
Problem with re-annotating mutations in gene TCL1B: skipping.
Problem with re-annotating mutations in gene TCN2: skipping.
Problem with re-annotating mutations in gene TCOF1: skipping.
Problem with re-annotating mutations in gene TCP1: skipping.
Problem with re-annotating mutations in gene TCP10: skipping.
Problem with re-annotating mutations in gene TCP11: skipping.
Problem with re-annotating mutations in gene TCP11L2: skipping.
Problem with re-annotating mutations in gene TCTA: skipping.
Problem with re-annotating mutations in gene TCTE1: skipping.
Problem with re-annotating mutations in gene TCTEX1D1: skipping.
Problem with re-annotating mutations in gene TCTEX1D2: skipping.
Problem with re-annotating mutations in gene TCTN2: skipping.
Problem with re-annotating mutations in gene TCTN3: skipping.
Problem with re-annotating mutations in gene TDG: skipping.
Problem with re-annotating mutations in gene TDO2: skipping.
Problem with re-annotating mutations in gene TDP1: skipping.
Problem with re-annotating mutations in gene TDRD1: skipping.
Problem with re-annotating mutations in gene TDRD10: skipping.
Problem with re-annotating mutations in gene TDRD3: skipping.
Problem with re-annotating mutations in gene TDRD5: skipping.
Problem with re-annotating mutations in gene TDRD6: skipping.
Problem with re-annotating mutations in gene TDRD7: skipping.
Problem with re-annotating mutations in gene TDRD9: skipping.
Problem with re-annotating mutations in gene TDRKH: skipping.
Problem with re-annotating mutations in gene TEAD1: skipping.
Problem with re-annotating mutations in gene TEAD2: skipping.
Problem with re-annotating mutations in gene TEAD3: skipping.
Problem with re-annotating mutations in gene TEAD4: skipping.
Problem with re-annotating mutations in gene TEC: skipping.
Problem with re-annotating mutations in gene TECPR2: skipping.
Problem with re-annotating mutations in gene TECRL: skipping.
Problem with re-annotating mutations in gene TECTA: skipping.
Problem with re-annotating mutations in gene TECTB: skipping.
Problem with re-annotating mutations in gene TEF: skipping.
Problem with re-annotating mutations in gene TEK: skipping.
Problem with re-annotating mutations in gene TEKT1: skipping.
Problem with re-annotating mutations in gene TEKT3: skipping.
Problem with re-annotating mutations in gene TEKT4: skipping.
Problem with re-annotating mutations in gene TEKT5: skipping.
Problem with re-annotating mutations in gene TEP1: skipping.
Problem with re-annotating mutations in gene TERF2IP: skipping.
Problem with re-annotating mutations in gene TERT: skipping.
Problem with re-annotating mutations in gene TES: skipping.
Problem with re-annotating mutations in gene TESK1: skipping.
12600/14661 Problem with re-annotating mutations in gene TESK2: skipping.
Problem with re-annotating mutations in gene TET1: skipping.
Problem with re-annotating mutations in gene TET2: skipping.
Problem with re-annotating mutations in gene TET3: skipping.
Problem with re-annotating mutations in gene TEX10: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TEX11: skipping.
Problem with re-annotating mutations in gene TEX12: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TEX13A: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TEX13B: skipping.
Problem with re-annotating mutations in gene TEX14: skipping.
Problem with re-annotating mutations in gene TEX15: skipping.
Problem with re-annotating mutations in gene TEX2: skipping.
Problem with re-annotating mutations in gene TEX9: skipping.
Problem with re-annotating mutations in gene TF: skipping.
Problem with re-annotating mutations in gene TFAP2A: skipping.
Problem with re-annotating mutations in gene TFAP2B: skipping.
Problem with re-annotating mutations in gene TFAP2C: skipping.
Problem with re-annotating mutations in gene TFAP2D: skipping.
Problem with re-annotating mutations in gene TFCP2: skipping.
Problem with re-annotating mutations in gene TFCP2L1: skipping.
Problem with re-annotating mutations in gene TFDP1: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TFE3: skipping.
Problem with re-annotating mutations in gene TFEB: skipping.
Problem with re-annotating mutations in gene TFEC: skipping.
Problem with re-annotating mutations in gene TFG: skipping.
Problem with re-annotating mutations in gene TFIP11: skipping.
Problem with re-annotating mutations in gene TFPI: skipping.
Problem with re-annotating mutations in gene TFPI2: skipping.
Problem with re-annotating mutations in gene TFR2: skipping.
Problem with re-annotating mutations in gene TFRC: skipping.
Problem with re-annotating mutations in gene TG: skipping.
Problem with re-annotating mutations in gene TGFB2: skipping.
Problem with re-annotating mutations in gene TGFBR1: skipping.
Problem with re-annotating mutations in gene TGFBR2: skipping.
Problem with re-annotating mutations in gene TGFBR3: skipping.
Problem with re-annotating mutations in gene TGFBRAP1: skipping.
Problem with re-annotating mutations in gene TGIF1: skipping.
Problem with re-annotating mutations in gene TGIF2: skipping.
Problem with re-annotating mutations in gene TGM1: skipping.
Problem with re-annotating mutations in gene TGM2: skipping.
Problem with re-annotating mutations in gene TGM3: skipping.
Problem with re-annotating mutations in gene TGM4: skipping.
Problem with re-annotating mutations in gene TGM5: skipping.
Problem with re-annotating mutations in gene TGM7: skipping.
Problem with re-annotating mutations in gene TGOLN2: skipping.
Problem with re-annotating mutations in gene TGS1: skipping.
Problem with re-annotating mutations in gene TH1L: skipping.
Problem with re-annotating mutations in gene THADA: skipping.
Problem with re-annotating mutations in gene THAP2: skipping.
Problem with re-annotating mutations in gene THAP3: skipping.
Problem with re-annotating mutations in gene THAP4: skipping.
Problem with re-annotating mutations in gene THAP5: skipping.
Problem with re-annotating mutations in gene THAP9: skipping.
Problem with re-annotating mutations in gene THBD: skipping.
Problem with re-annotating mutations in gene THBS1: skipping.
Problem with re-annotating mutations in gene THBS2: skipping.
Problem with re-annotating mutations in gene THBS3: skipping.
Problem with re-annotating mutations in gene THBS4: skipping.
Problem with re-annotating mutations in gene THEG: skipping.
Problem with re-annotating mutations in gene THEM4: skipping.
Problem with re-annotating mutations in gene THEMIS: skipping.
Problem with re-annotating mutations in gene THNSL1: skipping.
Problem with re-annotating mutations in gene THOC1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene THOC2: skipping.
Problem with re-annotating mutations in gene THOC3: skipping.
Problem with re-annotating mutations in gene THOC5: skipping.
Problem with re-annotating mutations in gene THOC6: skipping.
Problem with re-annotating mutations in gene THPO: skipping.
Problem with re-annotating mutations in gene THRA: skipping.
Problem with re-annotating mutations in gene THRAP3: skipping.
Problem with re-annotating mutations in gene THRB: skipping.
Problem with re-annotating mutations in gene THSD1: skipping.
Problem with re-annotating mutations in gene THSD4: skipping.
Problem with re-annotating mutations in gene THSD7A: skipping.
Problem with re-annotating mutations in gene THSD7B: skipping.
Problem with re-annotating mutations in gene THUMPD1: skipping.
Problem with re-annotating mutations in gene THUMPD2: skipping.
Problem with re-annotating mutations in gene THUMPD3: skipping.
Problem with re-annotating mutations in gene TIA1: skipping.
Problem with re-annotating mutations in gene TIAL1: skipping.
Problem with re-annotating mutations in gene TIAM1: skipping.
Problem with re-annotating mutations in gene TIAM2: skipping.
Problem with re-annotating mutations in gene TICAM1: skipping.
12700/14661 Problem with re-annotating mutations in gene TIE1: skipping.
Problem with re-annotating mutations in gene TIGD4: skipping.
Problem with re-annotating mutations in gene TIGIT: skipping.
Problem with re-annotating mutations in gene TIMELESS: skipping.
Problem with re-annotating mutations in gene TIMM44: skipping.
Problem with re-annotating mutations in gene TIMM50: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TIMP1: skipping.
Problem with re-annotating mutations in gene TIMP2: skipping.
Problem with re-annotating mutations in gene TIMP3: skipping.
Problem with re-annotating mutations in gene TIMP4: skipping.
Problem with re-annotating mutations in gene TINAG: skipping.
Problem with re-annotating mutations in gene TINAGL1: skipping.
Problem with re-annotating mutations in gene TIPARP: skipping.
Problem with re-annotating mutations in gene TJP1: skipping.
Problem with re-annotating mutations in gene TJP2: skipping.
Problem with re-annotating mutations in gene TKT: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TKTL1: skipping.
Problem with re-annotating mutations in gene TKTL2: skipping.
Problem with re-annotating mutations in gene TLE2: skipping.
Problem with re-annotating mutations in gene TLE3: skipping.
Problem with re-annotating mutations in gene TLE4: skipping.
Problem with re-annotating mutations in gene TLK1: skipping.
Problem with re-annotating mutations in gene TLK2: skipping.
Problem with re-annotating mutations in gene TLL1: skipping.
Problem with re-annotating mutations in gene TLL2: skipping.
Problem with re-annotating mutations in gene TLN1: skipping.
Problem with re-annotating mutations in gene TLN2: skipping.
Problem with re-annotating mutations in gene TLR1: skipping.
Problem with re-annotating mutations in gene TLR10: skipping.
Problem with re-annotating mutations in gene TLR2: skipping.
Problem with re-annotating mutations in gene TLR3: skipping.
Problem with re-annotating mutations in gene TLR4: skipping.
Problem with re-annotating mutations in gene TLR5: skipping.
Problem with re-annotating mutations in gene TLR6: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TLR7: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TLR8: skipping.
Problem with re-annotating mutations in gene TLR9: skipping.
Problem with re-annotating mutations in gene TLX1NB: skipping.
Problem with re-annotating mutations in gene TM2D1: skipping.
Problem with re-annotating mutations in gene TM2D2: skipping.
Problem with re-annotating mutations in gene TM4SF19: skipping.
Problem with re-annotating mutations in gene TM4SF4: skipping.
Problem with re-annotating mutations in gene TM6SF1: skipping.
Problem with re-annotating mutations in gene TM7SF3: skipping.
Problem with re-annotating mutations in gene TM7SF4: skipping.
Problem with re-annotating mutations in gene TM9SF1: skipping.
Problem with re-annotating mutations in gene TM9SF2: skipping.
Problem with re-annotating mutations in gene TM9SF3: skipping.
Problem with re-annotating mutations in gene TM9SF4: skipping.
Problem with re-annotating mutations in gene TMBIM4: skipping.
Problem with re-annotating mutations in gene TMC1: skipping.
Problem with re-annotating mutations in gene TMC2: skipping.
Problem with re-annotating mutations in gene TMC3: skipping.
Problem with re-annotating mutations in gene TMC4: skipping.
Problem with re-annotating mutations in gene TMC5: skipping.
Problem with re-annotating mutations in gene TMCC1: skipping.
Problem with re-annotating mutations in gene TMCC2: skipping.
Problem with re-annotating mutations in gene TMCC3: skipping.
Problem with re-annotating mutations in gene TMCO2: skipping.
Problem with re-annotating mutations in gene TMCO3: skipping.
Problem with re-annotating mutations in gene TMCO5A: skipping.
Problem with re-annotating mutations in gene TMCO6: skipping.
Problem with re-annotating mutations in gene TMCO7: skipping.
Problem with re-annotating mutations in gene TMED10: skipping.
Problem with re-annotating mutations in gene TMED2: skipping.
Problem with re-annotating mutations in gene TMED3: skipping.
Problem with re-annotating mutations in gene TMED5: skipping.
Problem with re-annotating mutations in gene TMED8: skipping.
Problem with re-annotating mutations in gene TMEFF1: skipping.
Problem with re-annotating mutations in gene TMEFF2: skipping.
12800/14661 Problem with re-annotating mutations in gene TMEM104: skipping.
Problem with re-annotating mutations in gene TMEM105: skipping.
Problem with re-annotating mutations in gene TMEM108: skipping.
Problem with re-annotating mutations in gene TMEM109: skipping.
Problem with re-annotating mutations in gene TMEM116: skipping.
Problem with re-annotating mutations in gene TMEM117: skipping.
Problem with re-annotating mutations in gene TMEM130: skipping.
Problem with re-annotating mutations in gene TMEM131: skipping.
Problem with re-annotating mutations in gene TMEM132A: skipping.
Problem with re-annotating mutations in gene TMEM132B: skipping.
Problem with re-annotating mutations in gene TMEM132D: skipping.
Problem with re-annotating mutations in gene TMEM132E: skipping.
Problem with re-annotating mutations in gene TMEM135: skipping.
Problem with re-annotating mutations in gene TMEM144: skipping.
Problem with re-annotating mutations in gene TMEM146: skipping.
Problem with re-annotating mutations in gene TMEM156: skipping.
Problem with re-annotating mutations in gene TMEM161A: skipping.
Problem with re-annotating mutations in gene TMEM161B: skipping.
Problem with re-annotating mutations in gene TMEM163: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TMEM164: skipping.
Problem with re-annotating mutations in gene TMEM165: skipping.
Problem with re-annotating mutations in gene TMEM168: skipping.
Problem with re-annotating mutations in gene TMEM170B: skipping.
Problem with re-annotating mutations in gene TMEM171: skipping.
Problem with re-annotating mutations in gene TMEM174: skipping.
Problem with re-annotating mutations in gene TMEM175: skipping.
Problem with re-annotating mutations in gene TMEM176B: skipping.
Problem with re-annotating mutations in gene TMEM177: skipping.
Problem with re-annotating mutations in gene TMEM178: skipping.
Problem with re-annotating mutations in gene TMEM180: skipping.
Problem with re-annotating mutations in gene TMEM183A: skipping.
Problem with re-annotating mutations in gene TMEM184C: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TMEM185A: skipping.
Problem with re-annotating mutations in gene TMEM189-UBE2V1: skipping.
Problem with re-annotating mutations in gene TMEM194A: skipping.
Problem with re-annotating mutations in gene TMEM195: skipping.
Problem with re-annotating mutations in gene TMEM198: skipping.
Problem with re-annotating mutations in gene TMEM2: skipping.
Problem with re-annotating mutations in gene TMEM20: skipping.
Problem with re-annotating mutations in gene TMEM200A: skipping.
Problem with re-annotating mutations in gene TMEM200C: skipping.
Problem with re-annotating mutations in gene TMEM202: skipping.
Problem with re-annotating mutations in gene TMEM214: skipping.
Problem with re-annotating mutations in gene TMEM215: skipping.
Problem with re-annotating mutations in gene TMEM217: skipping.
Problem with re-annotating mutations in gene TMEM22: skipping.
Problem with re-annotating mutations in gene TMEM225: skipping.
Problem with re-annotating mutations in gene TMEM25: skipping.
Problem with re-annotating mutations in gene TMEM30A: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TMEM31: skipping.
Problem with re-annotating mutations in gene TMEM33: skipping.
Problem with re-annotating mutations in gene TMEM38A: skipping.
12900/14661 Problem with re-annotating mutations in gene TMEM38B: skipping.
Problem with re-annotating mutations in gene TMEM41B: skipping.
Problem with re-annotating mutations in gene TMEM42: skipping.
Problem with re-annotating mutations in gene TMEM43: skipping.
Problem with re-annotating mutations in gene TMEM45B: skipping.
Problem with re-annotating mutations in gene TMEM48: skipping.
Problem with re-annotating mutations in gene TMEM49: skipping.
Problem with re-annotating mutations in gene TMEM5: skipping.
Problem with re-annotating mutations in gene TMEM50A: skipping.
Problem with re-annotating mutations in gene TMEM51: skipping.
Problem with re-annotating mutations in gene TMEM55A: skipping.
Problem with re-annotating mutations in gene TMEM55B: skipping.
Problem with re-annotating mutations in gene TMEM57: skipping.
Problem with re-annotating mutations in gene TMEM62: skipping.
Problem with re-annotating mutations in gene TMEM63A: skipping.
Problem with re-annotating mutations in gene TMEM63B: skipping.
Problem with re-annotating mutations in gene TMEM63C: skipping.
Problem with re-annotating mutations in gene TMEM65: skipping.
Problem with re-annotating mutations in gene TMEM67: skipping.
Problem with re-annotating mutations in gene TMEM71: skipping.
Problem with re-annotating mutations in gene TMEM74: skipping.
Problem with re-annotating mutations in gene TMEM79: skipping.
Problem with re-annotating mutations in gene TMEM86A: skipping.
Problem with re-annotating mutations in gene TMEM87B: skipping.
Problem with re-annotating mutations in gene TMEM8B: skipping.
Problem with re-annotating mutations in gene TMEM8C: skipping.
Problem with re-annotating mutations in gene TMEM90B: skipping.
Problem with re-annotating mutations in gene TMF1: skipping.
Problem with re-annotating mutations in gene TMIGD2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TMLHE: skipping.
Problem with re-annotating mutations in gene TMOD1: skipping.
Problem with re-annotating mutations in gene TMOD2: skipping.
Problem with re-annotating mutations in gene TMPO: skipping.
Problem with re-annotating mutations in gene TMPPE: skipping.
Problem with re-annotating mutations in gene TMPRSS11A: skipping.
Problem with re-annotating mutations in gene TMPRSS11B: skipping.
Problem with re-annotating mutations in gene TMPRSS11D: skipping.
Problem with re-annotating mutations in gene TMPRSS11F: skipping.
Problem with re-annotating mutations in gene TMPRSS12: skipping.
Problem with re-annotating mutations in gene TMPRSS13: skipping.
Problem with re-annotating mutations in gene TMPRSS2: skipping.
Problem with re-annotating mutations in gene TMPRSS3: skipping.
Problem with re-annotating mutations in gene TMPRSS4: skipping.
Problem with re-annotating mutations in gene TMPRSS5: skipping.
Problem with re-annotating mutations in gene TMPRSS6: skipping.
Problem with re-annotating mutations in gene TMPRSS7: skipping.
Problem with re-annotating mutations in gene TMPRSS9: skipping.
Problem with re-annotating mutations in gene TMTC1: skipping.
Problem with re-annotating mutations in gene TMTC2: skipping.
Problem with re-annotating mutations in gene TMTC3: skipping.
Problem with re-annotating mutations in gene TMTC4: skipping.
Problem with re-annotating mutations in gene TMX1: skipping.
Problem with re-annotating mutations in gene TMX2: skipping.
Problem with re-annotating mutations in gene TMX3: skipping.
Problem with re-annotating mutations in gene TNC: skipping.
Problem with re-annotating mutations in gene TNFAIP1: skipping.
Problem with re-annotating mutations in gene TNFAIP3: skipping.
Problem with re-annotating mutations in gene TNFAIP6: skipping.
Problem with re-annotating mutations in gene TNFRSF10A: skipping.
Problem with re-annotating mutations in gene TNFRSF10B: skipping.
Problem with re-annotating mutations in gene TNFRSF10C: skipping.
Problem with re-annotating mutations in gene TNFRSF11A: skipping.
Problem with re-annotating mutations in gene TNFRSF11B: skipping.
Problem with re-annotating mutations in gene TNFRSF13B: skipping.
Problem with re-annotating mutations in gene TNFRSF17: skipping.
Problem with re-annotating mutations in gene TNFRSF19: skipping.
Problem with re-annotating mutations in gene TNFRSF21: skipping.
Problem with re-annotating mutations in gene TNFRSF8: skipping.
Problem with re-annotating mutations in gene TNFRSF9: skipping.
13000/14661 Problem with re-annotating mutations in gene TNFSF12: skipping.
Problem with re-annotating mutations in gene TNFSF13: skipping.
Problem with re-annotating mutations in gene TNFSF14: skipping.
Problem with re-annotating mutations in gene TNFSF15: skipping.
Problem with re-annotating mutations in gene TNIK: skipping.
Problem with re-annotating mutations in gene TNIP1: skipping.
Problem with re-annotating mutations in gene TNIP2: skipping.
Problem with re-annotating mutations in gene TNIP3: skipping.
Problem with re-annotating mutations in gene TNK1: skipping.
Problem with re-annotating mutations in gene TNKS: skipping.
Problem with re-annotating mutations in gene TNKS1BP1: skipping.
Problem with re-annotating mutations in gene TNKS2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TNMD: skipping.
Problem with re-annotating mutations in gene TNN: skipping.
Problem with re-annotating mutations in gene TNNI1: skipping.
Problem with re-annotating mutations in gene TNNI3K: skipping.
Problem with re-annotating mutations in gene TNNT2: skipping.
Problem with re-annotating mutations in gene TNPO1: skipping.
Problem with re-annotating mutations in gene TNPO2: skipping.
Problem with re-annotating mutations in gene TNPO3: skipping.
Problem with re-annotating mutations in gene TNR: skipping.
Problem with re-annotating mutations in gene TNRC18: skipping.
Problem with re-annotating mutations in gene TNRC6A: skipping.
Problem with re-annotating mutations in gene TNRC6B: skipping.
Problem with re-annotating mutations in gene TNRC6C: skipping.
Problem with re-annotating mutations in gene TNS1: skipping.
Problem with re-annotating mutations in gene TNS3: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene TNXB: skipping.
Problem with re-annotating mutations in gene TOB1: skipping.
Problem with re-annotating mutations in gene TOMM34: skipping.
Problem with re-annotating mutations in gene TOMM70A: skipping.
Problem with re-annotating mutations in gene TOP1: skipping.
Problem with re-annotating mutations in gene TOP1MT: skipping.
Problem with re-annotating mutations in gene TOP2A: skipping.
Problem with re-annotating mutations in gene TOP2B: skipping.
Problem with re-annotating mutations in gene TOP3A: skipping.
Problem with re-annotating mutations in gene TOP3B: skipping.
Problem with re-annotating mutations in gene TOPBP1: skipping.
Problem with re-annotating mutations in gene TOPORS: skipping.
Problem with re-annotating mutations in gene TOR1A: skipping.
Problem with re-annotating mutations in gene TOR1AIP1: skipping.
Problem with re-annotating mutations in gene TOR3A: skipping.
Problem with re-annotating mutations in gene TOX: skipping.
Problem with re-annotating mutations in gene TOX2: skipping.
Problem with re-annotating mutations in gene TOX4: skipping.
<TP53 muts: Problem with re-annotating mutations in gene TP53: skipping.
Problem with re-annotating mutations in gene TP53BP1: skipping.
Problem with re-annotating mutations in gene TP53BP2: skipping.
Problem with re-annotating mutations in gene TP53I3: skipping.
Problem with re-annotating mutations in gene TP53INP1: skipping.
Problem with re-annotating mutations in gene TP53TG5: skipping.
Problem with re-annotating mutations in gene TP63: skipping.
Problem with re-annotating mutations in gene TPCN1: skipping.
Problem with re-annotating mutations in gene TPCN2: skipping.
Problem with re-annotating mutations in gene TPD52: skipping.
Problem with re-annotating mutations in gene TPD52L1: skipping.
Problem with re-annotating mutations in gene TPH1: skipping.
Problem with re-annotating mutations in gene TPH2: skipping.
Problem with re-annotating mutations in gene TPK1: skipping.
Problem with re-annotating mutations in gene TPM1: skipping.
Problem with re-annotating mutations in gene TPM2: skipping.
Problem with re-annotating mutations in gene TPM3: skipping.
Problem with re-annotating mutations in gene TPM4: skipping.
Problem with re-annotating mutations in gene TPMT: skipping.
Problem with re-annotating mutations in gene TPO: skipping.
Problem with re-annotating mutations in gene TPP1: skipping.
Problem with re-annotating mutations in gene TPP2: skipping.
Problem with re-annotating mutations in gene TPR: skipping.
Problem with re-annotating mutations in gene TPRX1: skipping.
13100/14661 Problem with re-annotating mutations in gene TPTE: skipping.
Problem with re-annotating mutations in gene TPTE2: skipping.
Problem with re-annotating mutations in gene TPX2: skipping.
Problem with re-annotating mutations in gene TRA2B: skipping.
Problem with re-annotating mutations in gene TRAF1: skipping.
Problem with re-annotating mutations in gene TRAF3: skipping.
Problem with re-annotating mutations in gene TRAF3IP1: skipping.
Problem with re-annotating mutations in gene TRAF3IP2: skipping.
Problem with re-annotating mutations in gene TRAF3IP3: skipping.
Problem with re-annotating mutations in gene TRAF4: skipping.
Problem with re-annotating mutations in gene TRAF5: skipping.
Problem with re-annotating mutations in gene TRAF6: skipping.
Problem with re-annotating mutations in gene TRAF7: skipping.
Problem with re-annotating mutations in gene TRAFD1: skipping.
Problem with re-annotating mutations in gene TRAIP: skipping.
Problem with re-annotating mutations in gene TRAK1: skipping.
Problem with re-annotating mutations in gene TRAK2: skipping.
Problem with re-annotating mutations in gene TRAM1: skipping.
Problem with re-annotating mutations in gene TRAM1L1: skipping.
Problem with re-annotating mutations in gene TRANK1: skipping.
Problem with re-annotating mutations in gene TRAPPC10: skipping.
Problem with re-annotating mutations in gene TRAPPC4: skipping.
Problem with re-annotating mutations in gene TRAPPC9: skipping.
Problem with re-annotating mutations in gene TRAT1: skipping.
Problem with re-annotating mutations in gene TRDMT1: skipping.
Problem with re-annotating mutations in gene TRDN: skipping.
Problem with re-annotating mutations in gene TREH: skipping.
Problem with re-annotating mutations in gene TREM1: skipping.
Problem with re-annotating mutations in gene TREM2: skipping.
Problem with re-annotating mutations in gene TRERF1: skipping.
Problem with re-annotating mutations in gene TREX1: skipping.
Problem with re-annotating mutations in gene TRH: skipping.
Problem with re-annotating mutations in gene TRHDE: skipping.
Problem with re-annotating mutations in gene TRHR: skipping.
Problem with re-annotating mutations in gene TRIB1: skipping.
Problem with re-annotating mutations in gene TRIB2: skipping.
Problem with re-annotating mutations in gene TRIL: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene TRIM10: skipping.
Problem with re-annotating mutations in gene TRIM13: skipping.
Problem with re-annotating mutations in gene TRIM17: skipping.
Problem with re-annotating mutations in gene TRIM2: skipping.
Problem with re-annotating mutations in gene TRIM22: skipping.
Problem with re-annotating mutations in gene TRIM23: skipping.
Problem with re-annotating mutations in gene TRIM24: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene TRIM26: skipping.
Problem with re-annotating mutations in gene TRIM28: skipping.
Problem with re-annotating mutations in gene TRIM29: skipping.
Problem with re-annotating mutations in gene TRIM3: skipping.
Problem with re-annotating mutations in gene TRIM32: skipping.
Problem with re-annotating mutations in gene TRIM33: skipping.
Problem with re-annotating mutations in gene TRIM35: skipping.
Problem with re-annotating mutations in gene TRIM36: skipping.
Problem with re-annotating mutations in gene TRIM37: skipping.
Problem with re-annotating mutations in gene TRIM38: skipping.
Problem with re-annotating mutations in gene TRIM39: skipping.
Problem with re-annotating mutations in gene TRIM4: skipping.
WARNING: unknown chromosome(s):
    'chr6_qbl_hap2'

Problem with re-annotating mutations in gene TRIM40: skipping.
Problem with re-annotating mutations in gene TRIM41: skipping.
Problem with re-annotating mutations in gene TRIM42: skipping.
Problem with re-annotating mutations in gene TRIM43: skipping.
Problem with re-annotating mutations in gene TRIM44: skipping.
Problem with re-annotating mutations in gene TRIM45: skipping.
Problem with re-annotating mutations in gene TRIM46: skipping.
Problem with re-annotating mutations in gene TRIM49: skipping.
Problem with re-annotating mutations in gene TRIM52: skipping.
Problem with re-annotating mutations in gene TRIM54: skipping.
Problem with re-annotating mutations in gene TRIM55: skipping.
Problem with re-annotating mutations in gene TRIM56: skipping.
Problem with re-annotating mutations in gene TRIM58: skipping.
Problem with re-annotating mutations in gene TRIM59: skipping.
Problem with re-annotating mutations in gene TRIM6: skipping.
Problem with re-annotating mutations in gene TRIM6-TRIM34: skipping.
Problem with re-annotating mutations in gene TRIM60: skipping.
Problem with re-annotating mutations in gene TRIM62: skipping.
Problem with re-annotating mutations in gene TRIM63: skipping.
Problem with re-annotating mutations in gene TRIM67: skipping.
Problem with re-annotating mutations in gene TRIM68: skipping.
Problem with re-annotating mutations in gene TRIM69: skipping.
13200/14661 Problem with re-annotating mutations in gene TRIM7: skipping.
Problem with re-annotating mutations in gene TRIM71: skipping.
Problem with re-annotating mutations in gene TRIM9: skipping.
Problem with re-annotating mutations in gene TRIML1: skipping.
Problem with re-annotating mutations in gene TRIML2: skipping.
Problem with re-annotating mutations in gene TRIO: skipping.
Problem with re-annotating mutations in gene TRIOBP: skipping.
Problem with re-annotating mutations in gene TRIP11: skipping.
Problem with re-annotating mutations in gene TRIP12: skipping.
Problem with re-annotating mutations in gene TRIP4: skipping.
Problem with re-annotating mutations in gene TRIT1: skipping.
Problem with re-annotating mutations in gene TRMT12: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TRMT2B: skipping.
Problem with re-annotating mutations in gene TRMT5: skipping.
Problem with re-annotating mutations in gene TRMU: skipping.
Problem with re-annotating mutations in gene TRNAU1AP: skipping.
Problem with re-annotating mutations in gene TRNT1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TRO: skipping.
Problem with re-annotating mutations in gene TROAP: skipping.
Problem with re-annotating mutations in gene TROVE2: skipping.
Problem with re-annotating mutations in gene TRPA1: skipping.
Problem with re-annotating mutations in gene TRPC1: skipping.
Problem with re-annotating mutations in gene TRPC3: skipping.
Problem with re-annotating mutations in gene TRPC4: skipping.
Problem with re-annotating mutations in gene TRPC4AP: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TRPC5: skipping.
Problem with re-annotating mutations in gene TRPC6: skipping.
Problem with re-annotating mutations in gene TRPC7: skipping.
Problem with re-annotating mutations in gene TRPM1: skipping.
Problem with re-annotating mutations in gene TRPM2: skipping.
Problem with re-annotating mutations in gene TRPM3: skipping.
Problem with re-annotating mutations in gene TRPM4: skipping.
Problem with re-annotating mutations in gene TRPM6: skipping.
Problem with re-annotating mutations in gene TRPM7: skipping.
Problem with re-annotating mutations in gene TRPM8: skipping.
Problem with re-annotating mutations in gene TRPS1: skipping.
Problem with re-annotating mutations in gene TRPV1: skipping.
Problem with re-annotating mutations in gene TRPV2: skipping.
Problem with re-annotating mutations in gene TRPV3: skipping.
Problem with re-annotating mutations in gene TRPV4: skipping.
Problem with re-annotating mutations in gene TRPV5: skipping.
Problem with re-annotating mutations in gene TRPV6: skipping.
Problem with re-annotating mutations in gene TRRAP: skipping.
Problem with re-annotating mutations in gene TRUB2: skipping.
Problem with re-annotating mutations in gene TRYX3: skipping.
Problem with re-annotating mutations in gene TSC1: skipping.
Problem with re-annotating mutations in gene TSC2: skipping.
Problem with re-annotating mutations in gene TSC22D1: skipping.
Problem with re-annotating mutations in gene TSC22D2: skipping.
Problem with re-annotating mutations in gene TSEN15: skipping.
Problem with re-annotating mutations in gene TSEN2: skipping.
Problem with re-annotating mutations in gene TSFM: skipping.
Problem with re-annotating mutations in gene TSG101: skipping.
Problem with re-annotating mutations in gene TSGA10: skipping.
Problem with re-annotating mutations in gene TSGA10IP: skipping.
Problem with re-annotating mutations in gene TSGA13: skipping.
Problem with re-annotating mutations in gene TSGA14: skipping.
Problem with re-annotating mutations in gene TSHR: skipping.
Problem with re-annotating mutations in gene TSHZ1: skipping.
Problem with re-annotating mutations in gene TSHZ2: skipping.
Problem with re-annotating mutations in gene TSHZ3: skipping.
Problem with re-annotating mutations in gene TSKS: skipping.
Problem with re-annotating mutations in gene TSLP: skipping.
Problem with re-annotating mutations in gene TSNAX: skipping.
Problem with re-annotating mutations in gene TSNAXIP1: skipping.
Problem with re-annotating mutations in gene TSPAN11: skipping.
Problem with re-annotating mutations in gene TSPAN17: skipping.
Problem with re-annotating mutations in gene TSPAN18: skipping.
Problem with re-annotating mutations in gene TSPAN19: skipping.
Problem with re-annotating mutations in gene TSPAN2: skipping.
Problem with re-annotating mutations in gene TSPAN3: skipping.
Problem with re-annotating mutations in gene TSPAN33: skipping.
Problem with re-annotating mutations in gene TSPAN5: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TSPAN6: skipping.
Problem with re-annotating mutations in gene TSPAN8: skipping.
Problem with re-annotating mutations in gene TSPAN9: skipping.
13300/14661 Problem with re-annotating mutations in gene TSPYL1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene TSPYL2: skipping.
Problem with re-annotating mutations in gene TSPYL4: skipping.
Problem with re-annotating mutations in gene TSPYL5: skipping.
Problem with re-annotating mutations in gene TSPYL6: skipping.
Problem with re-annotating mutations in gene TSR1: skipping.
Problem with re-annotating mutations in gene TSSC1: skipping.
Problem with re-annotating mutations in gene TSSK1B: skipping.
Problem with re-annotating mutations in gene TSSK2: skipping.
Problem with re-annotating mutations in gene TSSK3: skipping.
Problem with re-annotating mutations in gene TSSK4: skipping.
Problem with re-annotating mutations in gene TSTD2: skipping.
Problem with re-annotating mutations in gene TTBK1: skipping.
Problem with re-annotating mutations in gene TTBK2: skipping.
Problem with re-annotating mutations in gene TTC1: skipping.
Problem with re-annotating mutations in gene TTC12: skipping.
Problem with re-annotating mutations in gene TTC13: skipping.
Problem with re-annotating mutations in gene TTC14: skipping.
Problem with re-annotating mutations in gene TTC15: skipping.
Problem with re-annotating mutations in gene TTC17: skipping.
Problem with re-annotating mutations in gene TTC18: skipping.
Problem with re-annotating mutations in gene TTC21A: skipping.
Problem with re-annotating mutations in gene TTC21B: skipping.
Problem with re-annotating mutations in gene TTC23: skipping.
Problem with re-annotating mutations in gene TTC23L: skipping.
Problem with re-annotating mutations in gene TTC24: skipping.
Problem with re-annotating mutations in gene TTC26: skipping.
Problem with re-annotating mutations in gene TTC27: skipping.
Problem with re-annotating mutations in gene TTC29: skipping.
Problem with re-annotating mutations in gene TTC3: skipping.
Problem with re-annotating mutations in gene TTC30A: skipping.
Problem with re-annotating mutations in gene TTC30B: skipping.
Problem with re-annotating mutations in gene TTC31: skipping.
Problem with re-annotating mutations in gene TTC35: skipping.
Problem with re-annotating mutations in gene TTC37: skipping.
Problem with re-annotating mutations in gene TTC38: skipping.
Problem with re-annotating mutations in gene TTC39A: skipping.
Problem with re-annotating mutations in gene TTC39B: skipping.
Problem with re-annotating mutations in gene TTC39C: skipping.
Problem with re-annotating mutations in gene TTC5: skipping.
Problem with re-annotating mutations in gene TTC7A: skipping.
Problem with re-annotating mutations in gene TTC7B: skipping.
Problem with re-annotating mutations in gene TTC8: skipping.
Problem with re-annotating mutations in gene TTF1: skipping.
Problem with re-annotating mutations in gene TTF2: skipping.
Problem with re-annotating mutations in gene TTK: skipping.
Problem with re-annotating mutations in gene TTL: skipping.
Problem with re-annotating mutations in gene TTLL1: skipping.
Problem with re-annotating mutations in gene TTLL11: skipping.
Problem with re-annotating mutations in gene TTLL2: skipping.
Problem with re-annotating mutations in gene TTLL3: skipping.
Problem with re-annotating mutations in gene TTLL4: skipping.
Problem with re-annotating mutations in gene TTLL5: skipping.
Problem with re-annotating mutations in gene TTLL6: skipping.
Problem with re-annotating mutations in gene TTLL7: skipping.
Problem with re-annotating mutations in gene TTLL9: skipping.
<TTN muts: Problem with re-annotating mutations in gene TTN: skipping.
Problem with re-annotating mutations in gene TTPA: skipping.
Problem with re-annotating mutations in gene TTPAL: skipping.
Problem with re-annotating mutations in gene TTR: skipping.
Problem with re-annotating mutations in gene TTYH1: skipping.
Problem with re-annotating mutations in gene TTYH2: skipping.
Problem with re-annotating mutations in gene TTYH3: skipping.
Problem with re-annotating mutations in gene TUB: skipping.
Problem with re-annotating mutations in gene TUBA1B: skipping.
Problem with re-annotating mutations in gene TUBA1C: skipping.
Problem with re-annotating mutations in gene TUBA3C: skipping.
Problem with re-annotating mutations in gene TUBA3D: skipping.
Problem with re-annotating mutations in gene TUBA3E: skipping.
Problem with re-annotating mutations in gene TUBA4A: skipping.
Problem with re-annotating mutations in gene TUBA8: skipping.
Problem with re-annotating mutations in gene TUBAL3: skipping.
Problem with re-annotating mutations in gene TUBB1: skipping.
Problem with re-annotating mutations in gene TUBB2A: skipping.
Problem with re-annotating mutations in gene TUBB2B: skipping.
Problem with re-annotating mutations in gene TUBB3: skipping.
Problem with re-annotating mutations in gene TUBB4: skipping.
Problem with re-annotating mutations in gene TUBB4Q: skipping.
Problem with re-annotating mutations in gene TUBB6: skipping.
Problem with re-annotating mutations in gene TUBB8: skipping.
Problem with re-annotating mutations in gene TUBD1: skipping.
Problem with re-annotating mutations in gene TUBE1: skipping.
Problem with re-annotating mutations in gene TUBG2: skipping.
Problem with re-annotating mutations in gene TUBGCP2: skipping.
Problem with re-annotating mutations in gene TUBGCP3: skipping.
Problem with re-annotating mutations in gene TUBGCP4: skipping.
Problem with re-annotating mutations in gene TUBGCP5: skipping.
13400/14661 Problem with re-annotating mutations in gene TUFT1: skipping.
Problem with re-annotating mutations in gene TULP2: skipping.
Problem with re-annotating mutations in gene TULP3: skipping.
Problem with re-annotating mutations in gene TULP4: skipping.
Problem with re-annotating mutations in gene TUSC3: skipping.
Problem with re-annotating mutations in gene TUSC5: skipping.
Problem with re-annotating mutations in gene TUT1: skipping.
Problem with re-annotating mutations in gene TWF1: skipping.
Problem with re-annotating mutations in gene TWISTNB: skipping.
Problem with re-annotating mutations in gene TWSG1: skipping.
Problem with re-annotating mutations in gene TXK: skipping.
Problem with re-annotating mutations in gene TXLNA: skipping.
Problem with re-annotating mutations in gene TXLNB: skipping.
Problem with re-annotating mutations in gene TXNDC11: skipping.
Problem with re-annotating mutations in gene TXNDC12: skipping.
Problem with re-annotating mutations in gene TXNDC15: skipping.
Problem with re-annotating mutations in gene TXNDC16: skipping.
Problem with re-annotating mutations in gene TXNDC2: skipping.
Problem with re-annotating mutations in gene TXNDC3: skipping.
Problem with re-annotating mutations in gene TXNDC5: skipping.
Problem with re-annotating mutations in gene TXNDC6: skipping.
Problem with re-annotating mutations in gene TXNL4B: skipping.
Problem with re-annotating mutations in gene TXNRD1: skipping.
Problem with re-annotating mutations in gene TXNRD2: skipping.
Problem with re-annotating mutations in gene TXNRD3IT1: skipping.
Problem with re-annotating mutations in gene TYMS: skipping.
Problem with re-annotating mutations in gene TYR: skipping.
Problem with re-annotating mutations in gene TYRO3: skipping.
Problem with re-annotating mutations in gene TYRP1: skipping.
Problem with re-annotating mutations in gene TYW1: skipping.
Problem with re-annotating mutations in gene U2AF1: skipping.
Problem with re-annotating mutations in gene U2AF2: skipping.
Problem with re-annotating mutations in gene UACA: skipping.
Problem with re-annotating mutations in gene UAP1L1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene UBA1: skipping.
Problem with re-annotating mutations in gene UBA2: skipping.
Problem with re-annotating mutations in gene UBA3: skipping.
Problem with re-annotating mutations in gene UBA5: skipping.
Problem with re-annotating mutations in gene UBA52: skipping.
Problem with re-annotating mutations in gene UBA6: skipping.
Problem with re-annotating mutations in gene UBA7: skipping.
Problem with re-annotating mutations in gene UBAC1: skipping.
Problem with re-annotating mutations in gene UBAP2: skipping.
Problem with re-annotating mutations in gene UBAP2L: skipping.
Problem with re-annotating mutations in gene UBASH3A: skipping.
Problem with re-annotating mutations in gene UBASH3B: skipping.
Problem with re-annotating mutations in gene UBB: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene UBE2A: skipping.
Problem with re-annotating mutations in gene UBE2B: skipping.
Problem with re-annotating mutations in gene UBE2C: skipping.
Problem with re-annotating mutations in gene UBE2CBP: skipping.
Problem with re-annotating mutations in gene UBE2E1: skipping.
Problem with re-annotating mutations in gene UBE2G1: skipping.
Problem with re-annotating mutations in gene UBE2I: skipping.
Problem with re-annotating mutations in gene UBE2L3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene UBE2NL: skipping.
Problem with re-annotating mutations in gene UBE2O: skipping.
Problem with re-annotating mutations in gene UBE2Q1: skipping.
Problem with re-annotating mutations in gene UBE2R2: skipping.
Problem with re-annotating mutations in gene UBE2U: skipping.
Problem with re-annotating mutations in gene UBE3A: skipping.
Problem with re-annotating mutations in gene UBE3B: skipping.
Problem with re-annotating mutations in gene UBE3C: skipping.
Problem with re-annotating mutations in gene UBE4A: skipping.
Problem with re-annotating mutations in gene UBE4B: skipping.
Problem with re-annotating mutations in gene UBIAD1: skipping.
Problem with re-annotating mutations in gene UBL3: skipping.
Problem with re-annotating mutations in gene UBLCP1: skipping.
Problem with re-annotating mutations in gene UBN1: skipping.
Problem with re-annotating mutations in gene UBN2: skipping.
Problem with re-annotating mutations in gene UBOX5: skipping.
Problem with re-annotating mutations in gene UBP1: skipping.
Problem with re-annotating mutations in gene UBQLN1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene UBQLN2: skipping.
Problem with re-annotating mutations in gene UBQLN3: skipping.
Problem with re-annotating mutations in gene UBQLNL: skipping.
Problem with re-annotating mutations in gene UBR1: skipping.
13500/14661 Problem with re-annotating mutations in gene UBR2: skipping.
Problem with re-annotating mutations in gene UBR3: skipping.
Problem with re-annotating mutations in gene UBR4: skipping.
Problem with re-annotating mutations in gene UBR5: skipping.
Problem with re-annotating mutations in gene UBTD1: skipping.
Problem with re-annotating mutations in gene UBTD2: skipping.
Problem with re-annotating mutations in gene UBTF: skipping.
Problem with re-annotating mutations in gene UBXN11: skipping.
Problem with re-annotating mutations in gene UBXN2A: skipping.
Problem with re-annotating mutations in gene UBXN2B: skipping.
Problem with re-annotating mutations in gene UBXN4: skipping.
Problem with re-annotating mutations in gene UBXN6: skipping.
Problem with re-annotating mutations in gene UBXN7: skipping.
Problem with re-annotating mutations in gene UCHL1: skipping.
Problem with re-annotating mutations in gene UCHL3: skipping.
Problem with re-annotating mutations in gene UCP3: skipping.
Problem with re-annotating mutations in gene UFD1L: skipping.
Problem with re-annotating mutations in gene UFSP2: skipping.
Problem with re-annotating mutations in gene UGCG: skipping.
Problem with re-annotating mutations in gene UGDH: skipping.
Problem with re-annotating mutations in gene UGGT1: skipping.
Problem with re-annotating mutations in gene UGGT2: skipping.
Problem with re-annotating mutations in gene UGP2: skipping.
Problem with re-annotating mutations in gene UGT1A3: skipping.
Problem with re-annotating mutations in gene UGT1A4: skipping.
Problem with re-annotating mutations in gene UGT1A5: skipping.
Problem with re-annotating mutations in gene UGT1A7: skipping.
Problem with re-annotating mutations in gene UGT1A9: skipping.
Problem with re-annotating mutations in gene UGT2A1: skipping.
Problem with re-annotating mutations in gene UGT2A3: skipping.
Problem with re-annotating mutations in gene UGT2B11: skipping.
Problem with re-annotating mutations in gene UGT2B15: skipping.
Problem with re-annotating mutations in gene UGT2B17: skipping.
Problem with re-annotating mutations in gene UGT2B28: skipping.
Problem with re-annotating mutations in gene UGT2B4: skipping.
Problem with re-annotating mutations in gene UGT2B7: skipping.
Problem with re-annotating mutations in gene UGT3A1: skipping.
Problem with re-annotating mutations in gene UGT3A2: skipping.
Problem with re-annotating mutations in gene UGT8: skipping.
Problem with re-annotating mutations in gene UHMK1: skipping.
Problem with re-annotating mutations in gene UHRF1: skipping.
Problem with re-annotating mutations in gene UHRF1BP1: skipping.
Problem with re-annotating mutations in gene UHRF1BP1L: skipping.
Problem with re-annotating mutations in gene UHRF2: skipping.
Problem with re-annotating mutations in gene UIMC1: skipping.
Problem with re-annotating mutations in gene ULBP1: skipping.
Problem with re-annotating mutations in gene ULBP2: skipping.
Problem with re-annotating mutations in gene ULK2: skipping.
Problem with re-annotating mutations in gene ULK3: skipping.
Problem with re-annotating mutations in gene ULK4: skipping.
Problem with re-annotating mutations in gene UMOD: skipping.
Problem with re-annotating mutations in gene UMODL1: skipping.
Problem with re-annotating mutations in gene UNC13A: skipping.
Problem with re-annotating mutations in gene UNC13B: skipping.
Problem with re-annotating mutations in gene UNC13C: skipping.
Problem with re-annotating mutations in gene UNC13D: skipping.
Problem with re-annotating mutations in gene UNC45A: skipping.
Problem with re-annotating mutations in gene UNC45B: skipping.
Problem with re-annotating mutations in gene UNC5A: skipping.
Problem with re-annotating mutations in gene UNC5B: skipping.
Problem with re-annotating mutations in gene UNC5C: skipping.
Problem with re-annotating mutations in gene UNC5D: skipping.
Problem with re-annotating mutations in gene UNC93A: skipping.
Problem with re-annotating mutations in gene UNK: skipping.
Problem with re-annotating mutations in gene UPB1: skipping.
Problem with re-annotating mutations in gene UPF1: skipping.
Problem with re-annotating mutations in gene UPF2: skipping.
Problem with re-annotating mutations in gene UPF3A: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene UPF3B: skipping.
Problem with re-annotating mutations in gene UPK1A: skipping.
Problem with re-annotating mutations in gene UPK1B: skipping.
Problem with re-annotating mutations in gene UPP2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene UPRT: skipping.
Problem with re-annotating mutations in gene UQCRB: skipping.
Problem with re-annotating mutations in gene UQCRC1: skipping.
13600/14661 Problem with re-annotating mutations in gene UQCRC2: skipping.
Problem with re-annotating mutations in gene URB2: skipping.
Problem with re-annotating mutations in gene UROC1: skipping.
Problem with re-annotating mutations in gene USF1: skipping.
Problem with re-annotating mutations in gene USH1C: skipping.
Problem with re-annotating mutations in gene USH1G: skipping.
Problem with re-annotating mutations in gene USH2A: skipping.
Problem with re-annotating mutations in gene USHBP1: skipping.
Problem with re-annotating mutations in gene USO1: skipping.
Problem with re-annotating mutations in gene USP10: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene USP11: skipping.
Problem with re-annotating mutations in gene USP13: skipping.
Problem with re-annotating mutations in gene USP15: skipping.
Problem with re-annotating mutations in gene USP16: skipping.
Problem with re-annotating mutations in gene USP17L2: skipping.
Problem with re-annotating mutations in gene USP19: skipping.
Problem with re-annotating mutations in gene USP2: skipping.
Problem with re-annotating mutations in gene USP20: skipping.
Problem with re-annotating mutations in gene USP21: skipping.
Problem with re-annotating mutations in gene USP22: skipping.
Problem with re-annotating mutations in gene USP24: skipping.
Problem with re-annotating mutations in gene USP25: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene USP26: skipping.
Problem with re-annotating mutations in gene USP28: skipping.
Problem with re-annotating mutations in gene USP29: skipping.
Problem with re-annotating mutations in gene USP3: skipping.
Problem with re-annotating mutations in gene USP31: skipping.
Problem with re-annotating mutations in gene USP32: skipping.
Problem with re-annotating mutations in gene USP33: skipping.
Problem with re-annotating mutations in gene USP34: skipping.
Problem with re-annotating mutations in gene USP36: skipping.
Problem with re-annotating mutations in gene USP38: skipping.
Problem with re-annotating mutations in gene USP39: skipping.
Problem with re-annotating mutations in gene USP4: skipping.
Problem with re-annotating mutations in gene USP40: skipping.
Problem with re-annotating mutations in gene USP42: skipping.
Problem with re-annotating mutations in gene USP43: skipping.
Problem with re-annotating mutations in gene USP44: skipping.
Problem with re-annotating mutations in gene USP45: skipping.
Problem with re-annotating mutations in gene USP46: skipping.
Problem with re-annotating mutations in gene USP47: skipping.
Problem with re-annotating mutations in gene USP48: skipping.
Problem with re-annotating mutations in gene USP5: skipping.
Problem with re-annotating mutations in gene USP50: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene USP51: skipping.
Problem with re-annotating mutations in gene USP53: skipping.
Problem with re-annotating mutations in gene USP54: skipping.
Problem with re-annotating mutations in gene USP6: skipping.
Problem with re-annotating mutations in gene USP6NL: skipping.
Problem with re-annotating mutations in gene USP7: skipping.
Problem with re-annotating mutations in gene USP8: skipping.
convert_chr: assuming human for chrX/chrY
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene USP9X: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene USP9Y: skipping.
Problem with re-annotating mutations in gene USPL1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene UTP14A: skipping.
Problem with re-annotating mutations in gene UTP14C: skipping.
Problem with re-annotating mutations in gene UTP15: skipping.
Problem with re-annotating mutations in gene UTP20: skipping.
Problem with re-annotating mutations in gene UTP3: skipping.
Problem with re-annotating mutations in gene UTP6: skipping.
Problem with re-annotating mutations in gene UTRN: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene UTY: skipping.
Problem with re-annotating mutations in gene UVRAG: skipping.
Problem with re-annotating mutations in gene UXS1: skipping.
Problem with re-annotating mutations in gene VAMP3: skipping.
Problem with re-annotating mutations in gene VAMP4: skipping.
Problem with re-annotating mutations in gene VAMP5: skipping.
Problem with re-annotating mutations in gene VANGL1: skipping.
Problem with re-annotating mutations in gene VANGL2: skipping.
Problem with re-annotating mutations in gene VARS2: skipping.
Problem with re-annotating mutations in gene VASP: skipping.
Problem with re-annotating mutations in gene VAT1: skipping.
Problem with re-annotating mutations in gene VAV1: skipping.
Problem with re-annotating mutations in gene VAV2: skipping.
Problem with re-annotating mutations in gene VAV3: skipping.
Problem with re-annotating mutations in gene VCAM1: skipping.
Problem with re-annotating mutations in gene VCAN: skipping.
Problem with re-annotating mutations in gene VCL: skipping.
13700/14661 Problem with re-annotating mutations in gene VCP: skipping.
Problem with re-annotating mutations in gene VCPIP1: skipping.
Problem with re-annotating mutations in gene VDR: skipping.
Problem with re-annotating mutations in gene VEGFA: skipping.
Problem with re-annotating mutations in gene VEGFB: skipping.
Problem with re-annotating mutations in gene VEGFC: skipping.
Problem with re-annotating mutations in gene VEPH1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene VGLL1: skipping.
Problem with re-annotating mutations in gene VGLL4: skipping.
Problem with re-annotating mutations in gene VIL1: skipping.
Problem with re-annotating mutations in gene VILL: skipping.
Problem with re-annotating mutations in gene VIM: skipping.
Problem with re-annotating mutations in gene VIPR1: skipping.
Problem with re-annotating mutations in gene VIPR2: skipping.
Problem with re-annotating mutations in gene VIT: skipping.
Problem with re-annotating mutations in gene VLDLR: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene VMA21: skipping.
Problem with re-annotating mutations in gene VMO1: skipping.
Problem with re-annotating mutations in gene VN1R1: skipping.
Problem with re-annotating mutations in gene VN1R2: skipping.
Problem with re-annotating mutations in gene VNN1: skipping.
Problem with re-annotating mutations in gene VNN2: skipping.
Problem with re-annotating mutations in gene VOPP1: skipping.
Problem with re-annotating mutations in gene VPRBP: skipping.
Problem with re-annotating mutations in gene VPS11: skipping.
Problem with re-annotating mutations in gene VPS13A: skipping.
Problem with re-annotating mutations in gene VPS13B: skipping.
Problem with re-annotating mutations in gene VPS13C: skipping.
Problem with re-annotating mutations in gene VPS13D: skipping.
Problem with re-annotating mutations in gene VPS16: skipping.
Problem with re-annotating mutations in gene VPS18: skipping.
Problem with re-annotating mutations in gene VPS24: skipping.
Problem with re-annotating mutations in gene VPS26B: skipping.
Problem with re-annotating mutations in gene VPS33A: skipping.
Problem with re-annotating mutations in gene VPS33B: skipping.
Problem with re-annotating mutations in gene VPS35: skipping.
Problem with re-annotating mutations in gene VPS36: skipping.
Problem with re-annotating mutations in gene VPS37C: skipping.
Problem with re-annotating mutations in gene VPS39: skipping.
Problem with re-annotating mutations in gene VPS41: skipping.
Problem with re-annotating mutations in gene VPS45: skipping.
Problem with re-annotating mutations in gene VPS4A: skipping.
Problem with re-annotating mutations in gene VPS4B: skipping.
WARNING: unknown chromosome(s):
    'chr6_cox_hap1'

Problem with re-annotating mutations in gene VPS52: skipping.
Problem with re-annotating mutations in gene VPS53: skipping.
Problem with re-annotating mutations in gene VPS54: skipping.
Problem with re-annotating mutations in gene VPS8: skipping.
Problem with re-annotating mutations in gene VRK1: skipping.
Problem with re-annotating mutations in gene VRK2: skipping.
Problem with re-annotating mutations in gene VRK3: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene VSIG1: skipping.
Problem with re-annotating mutations in gene VSIG2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene VSIG4: skipping.
Problem with re-annotating mutations in gene VSIG8: skipping.
Problem with re-annotating mutations in gene VSX1: skipping.
Problem with re-annotating mutations in gene VTCN1: skipping.
Problem with re-annotating mutations in gene VTN: skipping.
Problem with re-annotating mutations in gene VWA2: skipping.
Problem with re-annotating mutations in gene VWA3A: skipping.
Problem with re-annotating mutations in gene VWA3B: skipping.
Problem with re-annotating mutations in gene VWA5A: skipping.
Problem with re-annotating mutations in gene VWC2L: skipping.
Problem with re-annotating mutations in gene VWCE: skipping.
Problem with re-annotating mutations in gene VWF: skipping.
Problem with re-annotating mutations in gene WAC: skipping.
Problem with re-annotating mutations in gene WAPAL: skipping.
Problem with re-annotating mutations in gene WARS: skipping.
Problem with re-annotating mutations in gene WARS2: skipping.
Problem with re-annotating mutations in gene WASF1: skipping.
Problem with re-annotating mutations in gene WASF2: skipping.
Problem with re-annotating mutations in gene WASF3: skipping.
Problem with re-annotating mutations in gene WASL: skipping.
13800/14661 Problem with re-annotating mutations in gene WBP11: skipping.
Problem with re-annotating mutations in gene WBP2NL: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene WBP5: skipping.
Problem with re-annotating mutations in gene WBSCR17: skipping.
Problem with re-annotating mutations in gene WDFY1: skipping.
Problem with re-annotating mutations in gene WDFY2: skipping.
Problem with re-annotating mutations in gene WDFY3: skipping.
Problem with re-annotating mutations in gene WDHD1: skipping.
Problem with re-annotating mutations in gene WDR1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene WDR13: skipping.
Problem with re-annotating mutations in gene WDR16: skipping.
Problem with re-annotating mutations in gene WDR17: skipping.
Problem with re-annotating mutations in gene WDR19: skipping.
Problem with re-annotating mutations in gene WDR25: skipping.
Problem with re-annotating mutations in gene WDR26: skipping.
Problem with re-annotating mutations in gene WDR27: skipping.
Problem with re-annotating mutations in gene WDR3: skipping.
Problem with re-annotating mutations in gene WDR33: skipping.
Problem with re-annotating mutations in gene WDR35: skipping.
Problem with re-annotating mutations in gene WDR36: skipping.
Problem with re-annotating mutations in gene WDR4: skipping.
Problem with re-annotating mutations in gene WDR41: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene WDR44: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene WDR45: skipping.
Problem with re-annotating mutations in gene WDR45L: skipping.
Problem with re-annotating mutations in gene WDR46: skipping.
Problem with re-annotating mutations in gene WDR47: skipping.
Problem with re-annotating mutations in gene WDR48: skipping.
Problem with re-annotating mutations in gene WDR49: skipping.
Problem with re-annotating mutations in gene WDR52: skipping.
Problem with re-annotating mutations in gene WDR55: skipping.
Problem with re-annotating mutations in gene WDR5B: skipping.
Problem with re-annotating mutations in gene WDR62: skipping.
Problem with re-annotating mutations in gene WDR63: skipping.
Problem with re-annotating mutations in gene WDR64: skipping.
Problem with re-annotating mutations in gene WDR65: skipping.
Problem with re-annotating mutations in gene WDR66: skipping.
Problem with re-annotating mutations in gene WDR67: skipping.
Problem with re-annotating mutations in gene WDR69: skipping.
Problem with re-annotating mutations in gene WDR7: skipping.
Problem with re-annotating mutations in gene WDR70: skipping.
Problem with re-annotating mutations in gene WDR72: skipping.
Problem with re-annotating mutations in gene WDR75: skipping.
Problem with re-annotating mutations in gene WDR76: skipping.
Problem with re-annotating mutations in gene WDR78: skipping.
Problem with re-annotating mutations in gene WDR8: skipping.
Problem with re-annotating mutations in gene WDR86: skipping.
Problem with re-annotating mutations in gene WDR88: skipping.
Problem with re-annotating mutations in gene WDR89: skipping.
Problem with re-annotating mutations in gene WDR90: skipping.
Problem with re-annotating mutations in gene WDR91: skipping.
Problem with re-annotating mutations in gene WDR92: skipping.
Problem with re-annotating mutations in gene WDR93: skipping.
Problem with re-annotating mutations in gene WDSUB1: skipping.
Problem with re-annotating mutations in gene WDTC1: skipping.
Problem with re-annotating mutations in gene WEE1: skipping.
Problem with re-annotating mutations in gene WEE2: skipping.
Problem with re-annotating mutations in gene WFDC1: skipping.
Problem with re-annotating mutations in gene WFDC3: skipping.
Problem with re-annotating mutations in gene WFDC8: skipping.
Problem with re-annotating mutations in gene WHAMM: skipping.
Problem with re-annotating mutations in gene WHSC1: skipping.
Problem with re-annotating mutations in gene WHSC1L1: skipping.
Problem with re-annotating mutations in gene WHSC2: skipping.
Problem with re-annotating mutations in gene WIF1: skipping.
Problem with re-annotating mutations in gene WIPF1: skipping.
Problem with re-annotating mutations in gene WIPF2: skipping.
Problem with re-annotating mutations in gene WIPF3: skipping.
Problem with re-annotating mutations in gene WIPI1: skipping.
Problem with re-annotating mutations in gene WIPI2: skipping.
Problem with re-annotating mutations in gene WISP1: skipping.
Problem with re-annotating mutations in gene WISP3: skipping.
Problem with re-annotating mutations in gene WIZ: skipping.
13900/14661 Problem with re-annotating mutations in gene WNK1: skipping.
Problem with re-annotating mutations in gene WNK2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene WNK3: skipping.
Problem with re-annotating mutations in gene WNK4: skipping.
Problem with re-annotating mutations in gene WNT10B: skipping.
Problem with re-annotating mutations in gene WNT11: skipping.
Problem with re-annotating mutations in gene WNT16: skipping.
Problem with re-annotating mutations in gene WNT2B: skipping.
Problem with re-annotating mutations in gene WNT3: skipping.
Problem with re-annotating mutations in gene WNT5A: skipping.
Problem with re-annotating mutations in gene WNT7A: skipping.
Problem with re-annotating mutations in gene WNT7B: skipping.
Problem with re-annotating mutations in gene WNT8A: skipping.
Problem with re-annotating mutations in gene WNT9A: skipping.
Problem with re-annotating mutations in gene WNT9B: skipping.
Problem with re-annotating mutations in gene WRN: skipping.
Problem with re-annotating mutations in gene WSCD1: skipping.
Problem with re-annotating mutations in gene WSCD2: skipping.
Problem with re-annotating mutations in gene WT1: skipping.
Problem with re-annotating mutations in gene WTAP: skipping.
Problem with re-annotating mutations in gene WWC1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene WWC3: skipping.
Problem with re-annotating mutations in gene WWOX: skipping.
Problem with re-annotating mutations in gene WWP1: skipping.
Problem with re-annotating mutations in gene WWP2: skipping.
Problem with re-annotating mutations in gene WWTR1: skipping.
Problem with re-annotating mutations in gene XAF1: skipping.
Problem with re-annotating mutations in gene XBP1: skipping.
Problem with re-annotating mutations in gene XDH: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene XG: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene XIAP: skipping.
Problem with re-annotating mutations in gene XIRP1: skipping.
Problem with re-annotating mutations in gene XIRP2: skipping.
Problem with re-annotating mutations in gene XKR3: skipping.
Problem with re-annotating mutations in gene XKR4: skipping.
Problem with re-annotating mutations in gene XKR6: skipping.
Problem with re-annotating mutations in gene XKR7: skipping.
Problem with re-annotating mutations in gene XKR8: skipping.
Problem with re-annotating mutations in gene XKR9: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene XKRX: skipping.
Problem with re-annotating mutations in gene XPC: skipping.
Problem with re-annotating mutations in gene XPNPEP1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene XPNPEP2: skipping.
Problem with re-annotating mutations in gene XPNPEP3: skipping.
Problem with re-annotating mutations in gene XPO1: skipping.
Problem with re-annotating mutations in gene XPO4: skipping.
Problem with re-annotating mutations in gene XPO6: skipping.
Problem with re-annotating mutations in gene XPO7: skipping.
Problem with re-annotating mutations in gene XPOT: skipping.
Problem with re-annotating mutations in gene XPR1: skipping.
Problem with re-annotating mutations in gene XRCC1: skipping.
Problem with re-annotating mutations in gene XRCC2: skipping.
Problem with re-annotating mutations in gene XRCC4: skipping.
Problem with re-annotating mutations in gene XRCC5: skipping.
Problem with re-annotating mutations in gene XRCC6: skipping.
Problem with re-annotating mutations in gene XRCC6BP1: skipping.
Problem with re-annotating mutations in gene XRN1: skipping.
Problem with re-annotating mutations in gene XRN2: skipping.
Problem with re-annotating mutations in gene XRRA1: skipping.
Problem with re-annotating mutations in gene XYLB: skipping.
Problem with re-annotating mutations in gene XYLT1: skipping.
Problem with re-annotating mutations in gene XYLT2: skipping.
Problem with re-annotating mutations in gene YAP1: skipping.
Problem with re-annotating mutations in gene YARS: skipping.
Problem with re-annotating mutations in gene YARS2: skipping.
Problem with re-annotating mutations in gene YBX1: skipping.
Problem with re-annotating mutations in gene YBX2: skipping.
Problem with re-annotating mutations in gene YEATS2: skipping.
Problem with re-annotating mutations in gene YIPF1: skipping.
Problem with re-annotating mutations in gene YIPF3: skipping.
Problem with re-annotating mutations in gene YIPF5: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene YIPF6: skipping.
Problem with re-annotating mutations in gene YLPM1: skipping.
Problem with re-annotating mutations in gene YME1L1: skipping.
Problem with re-annotating mutations in gene YSK4: skipping.
Problem with re-annotating mutations in gene YTHDC1: skipping.
Problem with re-annotating mutations in gene YTHDC2: skipping.
14000/14661 Problem with re-annotating mutations in gene YTHDF1: skipping.
Problem with re-annotating mutations in gene YTHDF2: skipping.
Problem with re-annotating mutations in gene YWHAB: skipping.
Problem with re-annotating mutations in gene YWHAE: skipping.
Problem with re-annotating mutations in gene YY1AP1: skipping.
Problem with re-annotating mutations in gene ZADH2: skipping.
Problem with re-annotating mutations in gene ZAK: skipping.
Problem with re-annotating mutations in gene ZAN: skipping.
Problem with re-annotating mutations in gene ZAP70: skipping.
Problem with re-annotating mutations in gene ZAR1: skipping.
Problem with re-annotating mutations in gene ZBBX: skipping.
Problem with re-annotating mutations in gene ZBED2: skipping.
Problem with re-annotating mutations in gene ZBED4: skipping.
Problem with re-annotating mutations in gene ZBP1: skipping.
Problem with re-annotating mutations in gene ZBTB1: skipping.
Problem with re-annotating mutations in gene ZBTB11: skipping.
Problem with re-annotating mutations in gene ZBTB16: skipping.
Problem with re-annotating mutations in gene ZBTB20: skipping.
Problem with re-annotating mutations in gene ZBTB24: skipping.
Problem with re-annotating mutations in gene ZBTB26: skipping.
Problem with re-annotating mutations in gene ZBTB3: skipping.
Problem with re-annotating mutations in gene ZBTB32: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZBTB33: skipping.
Problem with re-annotating mutations in gene ZBTB34: skipping.
Problem with re-annotating mutations in gene ZBTB38: skipping.
Problem with re-annotating mutations in gene ZBTB39: skipping.
Problem with re-annotating mutations in gene ZBTB4: skipping.
Problem with re-annotating mutations in gene ZBTB40: skipping.
Problem with re-annotating mutations in gene ZBTB41: skipping.
Problem with re-annotating mutations in gene ZBTB43: skipping.
Problem with re-annotating mutations in gene ZBTB44: skipping.
Problem with re-annotating mutations in gene ZBTB46: skipping.
Problem with re-annotating mutations in gene ZBTB6: skipping.
Problem with re-annotating mutations in gene ZBTB7A: skipping.
Problem with re-annotating mutations in gene ZBTB7C: skipping.
Problem with re-annotating mutations in gene ZC3H11A: skipping.
Problem with re-annotating mutations in gene ZC3H12A: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZC3H12B: skipping.
Problem with re-annotating mutations in gene ZC3H12C: skipping.
Problem with re-annotating mutations in gene ZC3H12D: skipping.
Problem with re-annotating mutations in gene ZC3H13: skipping.
Problem with re-annotating mutations in gene ZC3H14: skipping.
Problem with re-annotating mutations in gene ZC3H15: skipping.
Problem with re-annotating mutations in gene ZC3H18: skipping.
Problem with re-annotating mutations in gene ZC3H4: skipping.
Problem with re-annotating mutations in gene ZC3H6: skipping.
Problem with re-annotating mutations in gene ZC3H7B: skipping.
Problem with re-annotating mutations in gene ZC3HAV1: skipping.
Problem with re-annotating mutations in gene ZC3HC1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZC4H2: skipping.
Problem with re-annotating mutations in gene ZCCHC11: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZCCHC12: skipping.
Problem with re-annotating mutations in gene ZCCHC14: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZCCHC16: skipping.
Problem with re-annotating mutations in gene ZCCHC17: skipping.
Problem with re-annotating mutations in gene ZCCHC2: skipping.
Problem with re-annotating mutations in gene ZCCHC24: skipping.
Problem with re-annotating mutations in gene ZCCHC4: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZCCHC5: skipping.
Problem with re-annotating mutations in gene ZCCHC6: skipping.
Problem with re-annotating mutations in gene ZCCHC7: skipping.
Problem with re-annotating mutations in gene ZCCHC8: skipping.
Problem with re-annotating mutations in gene ZCCHC9: skipping.
Problem with re-annotating mutations in gene ZCWPW1: skipping.
Problem with re-annotating mutations in gene ZCWPW2: skipping.
Problem with re-annotating mutations in gene ZDBF2: skipping.
Problem with re-annotating mutations in gene ZDHHC1: skipping.
Problem with re-annotating mutations in gene ZDHHC14: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZDHHC15: skipping.
Problem with re-annotating mutations in gene ZDHHC16: skipping.
Problem with re-annotating mutations in gene ZDHHC17: skipping.
Problem with re-annotating mutations in gene ZDHHC2: skipping.
Problem with re-annotating mutations in gene ZDHHC20: skipping.
Problem with re-annotating mutations in gene ZDHHC21: skipping.
Problem with re-annotating mutations in gene ZDHHC23: skipping.
Problem with re-annotating mutations in gene ZDHHC24: skipping.
14100/14661 Problem with re-annotating mutations in gene ZDHHC5: skipping.
Problem with re-annotating mutations in gene ZDHHC6: skipping.
Problem with re-annotating mutations in gene ZDHHC7: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZDHHC9: skipping.
Problem with re-annotating mutations in gene ZEB1: skipping.
Problem with re-annotating mutations in gene ZEB2: skipping.
Problem with re-annotating mutations in gene ZER1: skipping.
Problem with re-annotating mutations in gene ZFAND3: skipping.
Problem with re-annotating mutations in gene ZFAT: skipping.
Problem with re-annotating mutations in gene ZFC3H1: skipping.
Problem with re-annotating mutations in gene ZFHX3: skipping.
Problem with re-annotating mutations in gene ZFHX4: skipping.
Problem with re-annotating mutations in gene ZFP1: skipping.
Problem with re-annotating mutations in gene ZFP106: skipping.
Problem with re-annotating mutations in gene ZFP112: skipping.
Problem with re-annotating mutations in gene ZFP14: skipping.
Problem with re-annotating mutations in gene ZFP161: skipping.
Problem with re-annotating mutations in gene ZFP2: skipping.
Problem with re-annotating mutations in gene ZFP28: skipping.
Problem with re-annotating mutations in gene ZFP3: skipping.
Problem with re-annotating mutations in gene ZFP30: skipping.
Problem with re-annotating mutations in gene ZFP37: skipping.
Problem with re-annotating mutations in gene ZFP42: skipping.
WARNING: unknown chromosome(s):
    'chr6_qbl_hap2'

Problem with re-annotating mutations in gene ZFP57: skipping.
Problem with re-annotating mutations in gene ZFP64: skipping.
Problem with re-annotating mutations in gene ZFP82: skipping.
Problem with re-annotating mutations in gene ZFP90: skipping.
Problem with re-annotating mutations in gene ZFP91: skipping.
Problem with re-annotating mutations in gene ZFPL1: skipping.
Problem with re-annotating mutations in gene ZFPM2: skipping.
Problem with re-annotating mutations in gene ZFR: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZFX: skipping.
Problem with re-annotating mutations in gene ZFYVE1: skipping.
Problem with re-annotating mutations in gene ZFYVE16: skipping.
Problem with re-annotating mutations in gene ZFYVE20: skipping.
Problem with re-annotating mutations in gene ZFYVE26: skipping.
Problem with re-annotating mutations in gene ZFYVE9: skipping.
Problem with re-annotating mutations in gene ZHX1: skipping.
Problem with re-annotating mutations in gene ZHX2: skipping.
Problem with re-annotating mutations in gene ZHX3: skipping.
Problem with re-annotating mutations in gene ZIC1: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZIC3: skipping.
Problem with re-annotating mutations in gene ZIC4: skipping.
Problem with re-annotating mutations in gene ZIK1: skipping.
Problem with re-annotating mutations in gene ZIM2: skipping.
Problem with re-annotating mutations in gene ZIM3: skipping.
Problem with re-annotating mutations in gene ZKSCAN1: skipping.
Problem with re-annotating mutations in gene ZKSCAN2: skipping.
Problem with re-annotating mutations in gene ZKSCAN3: skipping.
Problem with re-annotating mutations in gene ZKSCAN4: skipping.
Problem with re-annotating mutations in gene ZKSCAN5: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZMAT1: skipping.
Problem with re-annotating mutations in gene ZMAT3: skipping.
Problem with re-annotating mutations in gene ZMAT4: skipping.
Problem with re-annotating mutations in gene ZMIZ1: skipping.
Problem with re-annotating mutations in gene ZMPSTE24: skipping.
Problem with re-annotating mutations in gene ZMYM1: skipping.
Problem with re-annotating mutations in gene ZMYM2: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZMYM3: skipping.
Problem with re-annotating mutations in gene ZMYM4: skipping.
Problem with re-annotating mutations in gene ZMYM5: skipping.
Problem with re-annotating mutations in gene ZMYM6: skipping.
Problem with re-annotating mutations in gene ZMYND11: skipping.
Problem with re-annotating mutations in gene ZMYND15: skipping.
Problem with re-annotating mutations in gene ZMYND17: skipping.
Problem with re-annotating mutations in gene ZMYND19: skipping.
Problem with re-annotating mutations in gene ZMYND8: skipping.
Problem with re-annotating mutations in gene ZNF10: skipping.
Problem with re-annotating mutations in gene ZNF100: skipping.
Problem with re-annotating mutations in gene ZNF101: skipping.
Problem with re-annotating mutations in gene ZNF107: skipping.
Problem with re-annotating mutations in gene ZNF114: skipping.
Problem with re-annotating mutations in gene ZNF117: skipping.
Problem with re-annotating mutations in gene ZNF121: skipping.
Problem with re-annotating mutations in gene ZNF132: skipping.
Problem with re-annotating mutations in gene ZNF133: skipping.
Problem with re-annotating mutations in gene ZNF134: skipping.
Problem with re-annotating mutations in gene ZNF135: skipping.
Problem with re-annotating mutations in gene ZNF136: skipping.
Problem with re-annotating mutations in gene ZNF138: skipping.
Problem with re-annotating mutations in gene ZNF14: skipping.
Problem with re-annotating mutations in gene ZNF140: skipping.
Problem with re-annotating mutations in gene ZNF141: skipping.
Problem with re-annotating mutations in gene ZNF142: skipping.
Problem with re-annotating mutations in gene ZNF143: skipping.
14200/14661 Problem with re-annotating mutations in gene ZNF146: skipping.
Problem with re-annotating mutations in gene ZNF148: skipping.
Problem with re-annotating mutations in gene ZNF154: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZNF157: skipping.
Problem with re-annotating mutations in gene ZNF16: skipping.
Problem with re-annotating mutations in gene ZNF160: skipping.
Problem with re-annotating mutations in gene ZNF167: skipping.
Problem with re-annotating mutations in gene ZNF169: skipping.
Problem with re-annotating mutations in gene ZNF17: skipping.
Problem with re-annotating mutations in gene ZNF174: skipping.
Problem with re-annotating mutations in gene ZNF175: skipping.
Problem with re-annotating mutations in gene ZNF18: skipping.
Problem with re-annotating mutations in gene ZNF180: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZNF182: skipping.
Problem with re-annotating mutations in gene ZNF184: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZNF185: skipping.
Problem with re-annotating mutations in gene ZNF187: skipping.
Problem with re-annotating mutations in gene ZNF19: skipping.
Problem with re-annotating mutations in gene ZNF192: skipping.
Problem with re-annotating mutations in gene ZNF195: skipping.
Problem with re-annotating mutations in gene ZNF197: skipping.
Problem with re-annotating mutations in gene ZNF2: skipping.
Problem with re-annotating mutations in gene ZNF20: skipping.
Problem with re-annotating mutations in gene ZNF200: skipping.
Problem with re-annotating mutations in gene ZNF202: skipping.
Problem with re-annotating mutations in gene ZNF205: skipping.
Problem with re-annotating mutations in gene ZNF208: skipping.
Problem with re-annotating mutations in gene ZNF211: skipping.
Problem with re-annotating mutations in gene ZNF212: skipping.
Problem with re-annotating mutations in gene ZNF213: skipping.
Problem with re-annotating mutations in gene ZNF214: skipping.
Problem with re-annotating mutations in gene ZNF215: skipping.
Problem with re-annotating mutations in gene ZNF217: skipping.
Problem with re-annotating mutations in gene ZNF22: skipping.
Problem with re-annotating mutations in gene ZNF221: skipping.
Problem with re-annotating mutations in gene ZNF222: skipping.
Problem with re-annotating mutations in gene ZNF223: skipping.
Problem with re-annotating mutations in gene ZNF224: skipping.
Problem with re-annotating mutations in gene ZNF225: skipping.
Problem with re-annotating mutations in gene ZNF226: skipping.
Problem with re-annotating mutations in gene ZNF227: skipping.
Problem with re-annotating mutations in gene ZNF229: skipping.
Problem with re-annotating mutations in gene ZNF23: skipping.
Problem with re-annotating mutations in gene ZNF230: skipping.
Problem with re-annotating mutations in gene ZNF233: skipping.
Problem with re-annotating mutations in gene ZNF234: skipping.
Problem with re-annotating mutations in gene ZNF235: skipping.
Problem with re-annotating mutations in gene ZNF236: skipping.
Problem with re-annotating mutations in gene ZNF238: skipping.
Problem with re-annotating mutations in gene ZNF239: skipping.
Problem with re-annotating mutations in gene ZNF24: skipping.
Problem with re-annotating mutations in gene ZNF248: skipping.
Problem with re-annotating mutations in gene ZNF25: skipping.
Problem with re-annotating mutations in gene ZNF251: skipping.
Problem with re-annotating mutations in gene ZNF253: skipping.
Problem with re-annotating mutations in gene ZNF254: skipping.
Problem with re-annotating mutations in gene ZNF256: skipping.
Problem with re-annotating mutations in gene ZNF257: skipping.
Problem with re-annotating mutations in gene ZNF259: skipping.
Problem with re-annotating mutations in gene ZNF26: skipping.
Problem with re-annotating mutations in gene ZNF260: skipping.
Problem with re-annotating mutations in gene ZNF263: skipping.
Problem with re-annotating mutations in gene ZNF264: skipping.
Problem with re-annotating mutations in gene ZNF266: skipping.
Problem with re-annotating mutations in gene ZNF267: skipping.
Problem with re-annotating mutations in gene ZNF268: skipping.
Problem with re-annotating mutations in gene ZNF273: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZNF275: skipping.
Problem with re-annotating mutations in gene ZNF276: skipping.
Problem with re-annotating mutations in gene ZNF277: skipping.
Problem with re-annotating mutations in gene ZNF28: skipping.
Problem with re-annotating mutations in gene ZNF280A: skipping.
Problem with re-annotating mutations in gene ZNF280B: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZNF280C: skipping.
Problem with re-annotating mutations in gene ZNF280D: skipping.
Problem with re-annotating mutations in gene ZNF281: skipping.
Problem with re-annotating mutations in gene ZNF282: skipping.
Problem with re-annotating mutations in gene ZNF283: skipping.
Problem with re-annotating mutations in gene ZNF284: skipping.
Problem with re-annotating mutations in gene ZNF286A: skipping.
Problem with re-annotating mutations in gene ZNF287: skipping.
Problem with re-annotating mutations in gene ZNF292: skipping.
Problem with re-annotating mutations in gene ZNF295: skipping.
Problem with re-annotating mutations in gene ZNF3: skipping.
Problem with re-annotating mutations in gene ZNF30: skipping.
Problem with re-annotating mutations in gene ZNF300: skipping.
Problem with re-annotating mutations in gene ZNF302: skipping.
Problem with re-annotating mutations in gene ZNF304: skipping.
Problem with re-annotating mutations in gene ZNF311: skipping.
Problem with re-annotating mutations in gene ZNF317: skipping.
Problem with re-annotating mutations in gene ZNF318: skipping.
Problem with re-annotating mutations in gene ZNF319: skipping.
14300/14661 Problem with re-annotating mutations in gene ZNF32: skipping.
Problem with re-annotating mutations in gene ZNF320: skipping.
Problem with re-annotating mutations in gene ZNF322B: skipping.
Problem with re-annotating mutations in gene ZNF323: skipping.
Problem with re-annotating mutations in gene ZNF324: skipping.
Problem with re-annotating mutations in gene ZNF326: skipping.
Problem with re-annotating mutations in gene ZNF329: skipping.
Problem with re-annotating mutations in gene ZNF330: skipping.
Problem with re-annotating mutations in gene ZNF331: skipping.
Problem with re-annotating mutations in gene ZNF333: skipping.
Problem with re-annotating mutations in gene ZNF334: skipping.
Problem with re-annotating mutations in gene ZNF335: skipping.
Problem with re-annotating mutations in gene ZNF337: skipping.
Problem with re-annotating mutations in gene ZNF33A: skipping.
Problem with re-annotating mutations in gene ZNF33B: skipping.
Problem with re-annotating mutations in gene ZNF34: skipping.
Problem with re-annotating mutations in gene ZNF341: skipping.
Problem with re-annotating mutations in gene ZNF345: skipping.
Problem with re-annotating mutations in gene ZNF346: skipping.
Problem with re-annotating mutations in gene ZNF347: skipping.
Problem with re-annotating mutations in gene ZNF35: skipping.
Problem with re-annotating mutations in gene ZNF350: skipping.
Problem with re-annotating mutations in gene ZNF354A: skipping.
Problem with re-annotating mutations in gene ZNF354B: skipping.
Problem with re-annotating mutations in gene ZNF354C: skipping.
Problem with re-annotating mutations in gene ZNF362: skipping.
Problem with re-annotating mutations in gene ZNF365: skipping.
Problem with re-annotating mutations in gene ZNF366: skipping.
Problem with re-annotating mutations in gene ZNF367: skipping.
Problem with re-annotating mutations in gene ZNF37A: skipping.
Problem with re-annotating mutations in gene ZNF382: skipping.
Problem with re-annotating mutations in gene ZNF385A: skipping.
Problem with re-annotating mutations in gene ZNF385B: skipping.
Problem with re-annotating mutations in gene ZNF385D: skipping.
Problem with re-annotating mutations in gene ZNF391: skipping.
Problem with re-annotating mutations in gene ZNF395: skipping.
Problem with re-annotating mutations in gene ZNF397: skipping.
Problem with re-annotating mutations in gene ZNF398: skipping.
Problem with re-annotating mutations in gene ZNF404: skipping.
Problem with re-annotating mutations in gene ZNF407: skipping.
Problem with re-annotating mutations in gene ZNF408: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZNF41: skipping.
Problem with re-annotating mutations in gene ZNF410: skipping.
Problem with re-annotating mutations in gene ZNF415: skipping.
Problem with re-annotating mutations in gene ZNF416: skipping.
Problem with re-annotating mutations in gene ZNF417: skipping.
Problem with re-annotating mutations in gene ZNF418: skipping.
Problem with re-annotating mutations in gene ZNF419: skipping.
Problem with re-annotating mutations in gene ZNF420: skipping.
Problem with re-annotating mutations in gene ZNF423: skipping.
Problem with re-annotating mutations in gene ZNF425: skipping.
Problem with re-annotating mutations in gene ZNF426: skipping.
Problem with re-annotating mutations in gene ZNF429: skipping.
Problem with re-annotating mutations in gene ZNF43: skipping.
Problem with re-annotating mutations in gene ZNF430: skipping.
Problem with re-annotating mutations in gene ZNF431: skipping.
Problem with re-annotating mutations in gene ZNF432: skipping.
Problem with re-annotating mutations in gene ZNF433: skipping.
Problem with re-annotating mutations in gene ZNF434: skipping.
Problem with re-annotating mutations in gene ZNF438: skipping.
Problem with re-annotating mutations in gene ZNF439: skipping.
Problem with re-annotating mutations in gene ZNF44: skipping.
Problem with re-annotating mutations in gene ZNF440: skipping.
Problem with re-annotating mutations in gene ZNF441: skipping.
Problem with re-annotating mutations in gene ZNF442: skipping.
Problem with re-annotating mutations in gene ZNF443: skipping.
Problem with re-annotating mutations in gene ZNF445: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZNF449: skipping.
Problem with re-annotating mutations in gene ZNF451: skipping.
Problem with re-annotating mutations in gene ZNF454: skipping.
Problem with re-annotating mutations in gene ZNF461: skipping.
Problem with re-annotating mutations in gene ZNF462: skipping.
Problem with re-annotating mutations in gene ZNF467: skipping.
Problem with re-annotating mutations in gene ZNF468: skipping.
Problem with re-annotating mutations in gene ZNF470: skipping.
Problem with re-annotating mutations in gene ZNF471: skipping.
Problem with re-annotating mutations in gene ZNF473: skipping.
Problem with re-annotating mutations in gene ZNF474: skipping.
Problem with re-annotating mutations in gene ZNF479: skipping.
Problem with re-annotating mutations in gene ZNF480: skipping.
Problem with re-annotating mutations in gene ZNF483: skipping.
Problem with re-annotating mutations in gene ZNF484: skipping.
Problem with re-annotating mutations in gene ZNF486: skipping.
Problem with re-annotating mutations in gene ZNF488: skipping.
Problem with re-annotating mutations in gene ZNF490: skipping.
Problem with re-annotating mutations in gene ZNF491: skipping.
Problem with re-annotating mutations in gene ZNF492: skipping.
Problem with re-annotating mutations in gene ZNF493: skipping.
Problem with re-annotating mutations in gene ZNF496: skipping.
14400/14661 Problem with re-annotating mutations in gene ZNF498: skipping.
Problem with re-annotating mutations in gene ZNF500: skipping.
Problem with re-annotating mutations in gene ZNF501: skipping.
Problem with re-annotating mutations in gene ZNF502: skipping.
Problem with re-annotating mutations in gene ZNF506: skipping.
Problem with re-annotating mutations in gene ZNF507: skipping.
Problem with re-annotating mutations in gene ZNF510: skipping.
Problem with re-annotating mutations in gene ZNF512B: skipping.
Problem with re-annotating mutations in gene ZNF513: skipping.
Problem with re-annotating mutations in gene ZNF514: skipping.
Problem with re-annotating mutations in gene ZNF516: skipping.
Problem with re-annotating mutations in gene ZNF517: skipping.
Problem with re-annotating mutations in gene ZNF518A: skipping.
Problem with re-annotating mutations in gene ZNF518B: skipping.
Problem with re-annotating mutations in gene ZNF519: skipping.
Problem with re-annotating mutations in gene ZNF521: skipping.
Problem with re-annotating mutations in gene ZNF527: skipping.
Problem with re-annotating mutations in gene ZNF528: skipping.
Problem with re-annotating mutations in gene ZNF529: skipping.
Problem with re-annotating mutations in gene ZNF530: skipping.
Problem with re-annotating mutations in gene ZNF532: skipping.
Problem with re-annotating mutations in gene ZNF534: skipping.
Problem with re-annotating mutations in gene ZNF536: skipping.
Problem with re-annotating mutations in gene ZNF540: skipping.
Problem with re-annotating mutations in gene ZNF543: skipping.
Problem with re-annotating mutations in gene ZNF544: skipping.
Problem with re-annotating mutations in gene ZNF546: skipping.
Problem with re-annotating mutations in gene ZNF547: skipping.
Problem with re-annotating mutations in gene ZNF548: skipping.
Problem with re-annotating mutations in gene ZNF549: skipping.
Problem with re-annotating mutations in gene ZNF551: skipping.
Problem with re-annotating mutations in gene ZNF552: skipping.
Problem with re-annotating mutations in gene ZNF554: skipping.
Problem with re-annotating mutations in gene ZNF555: skipping.
Problem with re-annotating mutations in gene ZNF556: skipping.
Problem with re-annotating mutations in gene ZNF558: skipping.
Problem with re-annotating mutations in gene ZNF559: skipping.
Problem with re-annotating mutations in gene ZNF560: skipping.
Problem with re-annotating mutations in gene ZNF561: skipping.
Problem with re-annotating mutations in gene ZNF562: skipping.
Problem with re-annotating mutations in gene ZNF563: skipping.
Problem with re-annotating mutations in gene ZNF564: skipping.
Problem with re-annotating mutations in gene ZNF565: skipping.
Problem with re-annotating mutations in gene ZNF567: skipping.
Problem with re-annotating mutations in gene ZNF568: skipping.
Problem with re-annotating mutations in gene ZNF569: skipping.
Problem with re-annotating mutations in gene ZNF57: skipping.
Problem with re-annotating mutations in gene ZNF570: skipping.
Problem with re-annotating mutations in gene ZNF571: skipping.
Problem with re-annotating mutations in gene ZNF572: skipping.
Problem with re-annotating mutations in gene ZNF573: skipping.
Problem with re-annotating mutations in gene ZNF574: skipping.
Problem with re-annotating mutations in gene ZNF577: skipping.
Problem with re-annotating mutations in gene ZNF578: skipping.
Problem with re-annotating mutations in gene ZNF582: skipping.
Problem with re-annotating mutations in gene ZNF583: skipping.
Problem with re-annotating mutations in gene ZNF584: skipping.
Problem with re-annotating mutations in gene ZNF585A: skipping.
Problem with re-annotating mutations in gene ZNF585B: skipping.
Problem with re-annotating mutations in gene ZNF586: skipping.
Problem with re-annotating mutations in gene ZNF592: skipping.
Problem with re-annotating mutations in gene ZNF593: skipping.
Problem with re-annotating mutations in gene ZNF594: skipping.
Problem with re-annotating mutations in gene ZNF595: skipping.
Problem with re-annotating mutations in gene ZNF596: skipping.
Problem with re-annotating mutations in gene ZNF599: skipping.
Problem with re-annotating mutations in gene ZNF600: skipping.
Problem with re-annotating mutations in gene ZNF605: skipping.
Problem with re-annotating mutations in gene ZNF606: skipping.
Problem with re-annotating mutations in gene ZNF607: skipping.
Problem with re-annotating mutations in gene ZNF608: skipping.
Problem with re-annotating mutations in gene ZNF609: skipping.
Problem with re-annotating mutations in gene ZNF610: skipping.
Problem with re-annotating mutations in gene ZNF611: skipping.
Problem with re-annotating mutations in gene ZNF613: skipping.
Problem with re-annotating mutations in gene ZNF614: skipping.
Problem with re-annotating mutations in gene ZNF615: skipping.
Problem with re-annotating mutations in gene ZNF616: skipping.
Problem with re-annotating mutations in gene ZNF618: skipping.
Problem with re-annotating mutations in gene ZNF619: skipping.
Problem with re-annotating mutations in gene ZNF620: skipping.
Problem with re-annotating mutations in gene ZNF621: skipping.
Problem with re-annotating mutations in gene ZNF622: skipping.
Problem with re-annotating mutations in gene ZNF623: skipping.
Problem with re-annotating mutations in gene ZNF624: skipping.
Problem with re-annotating mutations in gene ZNF625: skipping.
Problem with re-annotating mutations in gene ZNF626: skipping.
Problem with re-annotating mutations in gene ZNF627: skipping.
Problem with re-annotating mutations in gene ZNF628: skipping.
Problem with re-annotating mutations in gene ZNF629: skipping.
14500/14661 convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZNF630: skipping.
Problem with re-annotating mutations in gene ZNF638: skipping.
Problem with re-annotating mutations in gene ZNF639: skipping.
Problem with re-annotating mutations in gene ZNF642: skipping.
Problem with re-annotating mutations in gene ZNF643: skipping.
Problem with re-annotating mutations in gene ZNF644: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZNF645: skipping.
Problem with re-annotating mutations in gene ZNF648: skipping.
Problem with re-annotating mutations in gene ZNF649: skipping.
Problem with re-annotating mutations in gene ZNF652: skipping.
Problem with re-annotating mutations in gene ZNF653: skipping.
Problem with re-annotating mutations in gene ZNF654: skipping.
Problem with re-annotating mutations in gene ZNF655: skipping.
Problem with re-annotating mutations in gene ZNF658: skipping.
Problem with re-annotating mutations in gene ZNF662: skipping.
Problem with re-annotating mutations in gene ZNF664: skipping.
Problem with re-annotating mutations in gene ZNF665: skipping.
Problem with re-annotating mutations in gene ZNF667: skipping.
Problem with re-annotating mutations in gene ZNF669: skipping.
Problem with re-annotating mutations in gene ZNF670: skipping.
Problem with re-annotating mutations in gene ZNF671: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZNF674: skipping.
Problem with re-annotating mutations in gene ZNF675: skipping.
Problem with re-annotating mutations in gene ZNF676: skipping.
Problem with re-annotating mutations in gene ZNF677: skipping.
Problem with re-annotating mutations in gene ZNF678: skipping.
Problem with re-annotating mutations in gene ZNF680: skipping.
Problem with re-annotating mutations in gene ZNF681: skipping.
Problem with re-annotating mutations in gene ZNF687: skipping.
Problem with re-annotating mutations in gene ZNF689: skipping.
Problem with re-annotating mutations in gene ZNF691: skipping.
Problem with re-annotating mutations in gene ZNF692: skipping.
Problem with re-annotating mutations in gene ZNF699: skipping.
Problem with re-annotating mutations in gene ZNF7: skipping.
Problem with re-annotating mutations in gene ZNF70: skipping.
Problem with re-annotating mutations in gene ZNF700: skipping.
Problem with re-annotating mutations in gene ZNF701: skipping.
Problem with re-annotating mutations in gene ZNF705A: skipping.
Problem with re-annotating mutations in gene ZNF708: skipping.
Problem with re-annotating mutations in gene ZNF709: skipping.
Problem with re-annotating mutations in gene ZNF71: skipping.
Problem with re-annotating mutations in gene ZNF710: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZNF711: skipping.
Problem with re-annotating mutations in gene ZNF713: skipping.
Problem with re-annotating mutations in gene ZNF714: skipping.
Problem with re-annotating mutations in gene ZNF718: skipping.
Problem with re-annotating mutations in gene ZNF721: skipping.
Problem with re-annotating mutations in gene ZNF74: skipping.
Problem with re-annotating mutations in gene ZNF746: skipping.
Problem with re-annotating mutations in gene ZNF749: skipping.
Problem with re-annotating mutations in gene ZNF750: skipping.
Problem with re-annotating mutations in gene ZNF75A: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZNF75D: skipping.
Problem with re-annotating mutations in gene ZNF76: skipping.
Problem with re-annotating mutations in gene ZNF761: skipping.
Problem with re-annotating mutations in gene ZNF763: skipping.
Problem with re-annotating mutations in gene ZNF765: skipping.
Problem with re-annotating mutations in gene ZNF766: skipping.
Problem with re-annotating mutations in gene ZNF768: skipping.
Problem with re-annotating mutations in gene ZNF77: skipping.
Problem with re-annotating mutations in gene ZNF770: skipping.
Problem with re-annotating mutations in gene ZNF772: skipping.
Problem with re-annotating mutations in gene ZNF773: skipping.
Problem with re-annotating mutations in gene ZNF774: skipping.
Problem with re-annotating mutations in gene ZNF776: skipping.
Problem with re-annotating mutations in gene ZNF777: skipping.
Problem with re-annotating mutations in gene ZNF778: skipping.
Problem with re-annotating mutations in gene ZNF780A: skipping.
Problem with re-annotating mutations in gene ZNF780B: skipping.
Problem with re-annotating mutations in gene ZNF781: skipping.
Problem with re-annotating mutations in gene ZNF782: skipping.
Problem with re-annotating mutations in gene ZNF786: skipping.
Problem with re-annotating mutations in gene ZNF789: skipping.
Problem with re-annotating mutations in gene ZNF790: skipping.
Problem with re-annotating mutations in gene ZNF791: skipping.
Problem with re-annotating mutations in gene ZNF792: skipping.
Problem with re-annotating mutations in gene ZNF793: skipping.
Problem with re-annotating mutations in gene ZNF799: skipping.
Problem with re-annotating mutations in gene ZNF80: skipping.
Problem with re-annotating mutations in gene ZNF800: skipping.
Problem with re-annotating mutations in gene ZNF804A: skipping.
Problem with re-annotating mutations in gene ZNF804B: skipping.
Problem with re-annotating mutations in gene ZNF808: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZNF81: skipping.
Problem with re-annotating mutations in gene ZNF813: skipping.
Problem with re-annotating mutations in gene ZNF821: skipping.
Problem with re-annotating mutations in gene ZNF823: skipping.
Problem with re-annotating mutations in gene ZNF827: skipping.
14600/14661 Problem with re-annotating mutations in gene ZNF828: skipping.
Problem with re-annotating mutations in gene ZNF829: skipping.
Problem with re-annotating mutations in gene ZNF83: skipping.
Problem with re-annotating mutations in gene ZNF831: skipping.
Problem with re-annotating mutations in gene ZNF835: skipping.
Problem with re-annotating mutations in gene ZNF836: skipping.
Problem with re-annotating mutations in gene ZNF84: skipping.
Problem with re-annotating mutations in gene ZNF846: skipping.
Problem with re-annotating mutations in gene ZNF85: skipping.
Problem with re-annotating mutations in gene ZNF862: skipping.
Problem with re-annotating mutations in gene ZNF878: skipping.
Problem with re-annotating mutations in gene ZNF91: skipping.
Problem with re-annotating mutations in gene ZNF92: skipping.
Problem with re-annotating mutations in gene ZNF93: skipping.
Problem with re-annotating mutations in gene ZNF98: skipping.
Problem with re-annotating mutations in gene ZNF99: skipping.
Problem with re-annotating mutations in gene ZNFX1: skipping.
Problem with re-annotating mutations in gene ZNHIT2: skipping.
Problem with re-annotating mutations in gene ZNHIT6: skipping.
Problem with re-annotating mutations in gene ZNRF4: skipping.
Problem with re-annotating mutations in gene ZP1: skipping.
Problem with re-annotating mutations in gene ZP2: skipping.
Problem with re-annotating mutations in gene ZP3: skipping.
Problem with re-annotating mutations in gene ZP4: skipping.
Problem with re-annotating mutations in gene ZPBP: skipping.
Problem with re-annotating mutations in gene ZPLD1: skipping.
Problem with re-annotating mutations in gene ZRANB1: skipping.
Problem with re-annotating mutations in gene ZRANB2: skipping.
Problem with re-annotating mutations in gene ZRANB3: skipping.
Problem with re-annotating mutations in gene ZSCAN1: skipping.
Problem with re-annotating mutations in gene ZSCAN16: skipping.
Problem with re-annotating mutations in gene ZSCAN18: skipping.
Problem with re-annotating mutations in gene ZSCAN2: skipping.
Problem with re-annotating mutations in gene ZSCAN20: skipping.
Problem with re-annotating mutations in gene ZSCAN21: skipping.
Problem with re-annotating mutations in gene ZSCAN29: skipping.
Problem with re-annotating mutations in gene ZSCAN4: skipping.
Problem with re-annotating mutations in gene ZSCAN5A: skipping.
Problem with re-annotating mutations in gene ZSCAN5B: skipping.
Problem with re-annotating mutations in gene ZSWIM1: skipping.
Problem with re-annotating mutations in gene ZSWIM2: skipping.
Problem with re-annotating mutations in gene ZSWIM3: skipping.
Problem with re-annotating mutations in gene ZSWIM4: skipping.
Problem with re-annotating mutations in gene ZSWIM5: skipping.
Problem with re-annotating mutations in gene ZW10: skipping.
Problem with re-annotating mutations in gene ZWILCH: skipping.
Problem with re-annotating mutations in gene ZWINT: skipping.
convert_chr: assuming human for chrX/chrY
Problem with re-annotating mutations in gene ZXDA: skipping.
Problem with re-annotating mutations in gene ZXDC: skipping.
Problem with re-annotating mutations in gene ZYG11B: skipping.
Problem with re-annotating mutations in gene ZZEF1: skipping.
Problem with re-annotating mutations in gene ZZZ3: skipping.

Truncating list of significant genes after the first 100 genes
Analyzing gene-gene correlations and anti-correlations
Performing permutations:
1.57	10/1000000	0.16	0.157	6.4	4609/4950 pairs	13/100 genes done
2.79	42/1000000	0.07	0.038	26.3	4847/4950 pairs	39/100 genes done
5.34	173/1000000	0.03	0.019	51.4	4910/4950 pairs	63/100 genes done
9.20	430/1000000	0.02	0.015	66.6	4916/4950 pairs	68/100 genes done
13.72	762/1000000	0.02	0.014	73.3	4916/4950 pairs	68/100 genes done
18.71	1129/1000000	0.02	0.014	73.6	4916/4950 pairs	68/100 genes done
23.77	1497/1000000	0.02	0.014	72.8	4916/4950 pairs	68/100 genes done
28.91	1866/1000000	0.02	0.014	71.8	4916/4950 pairs	68/100 genes done
34.11	2234/1000000	0.02	0.014	70.7	4916/4950 pairs	68/100 genes done
39.18	2602/1000000	0.02	0.014	72.6	4916/4950 pairs	68/100 genes done
44.22	2970/1000000	0.01	0.014	73.0	4916/4950 pairs	68/100 genes done
49.27	3338/1000000	0.01	0.014	72.9	4916/4950 pairs	68/100 genes done
54.34	3706/1000000	0.01	0.014	72.6	4916/4950 pairs	68/100 genes done
59.39	4074/1000000	0.01	0.014	72.9	4916/4950 pairs	68/100 genes done
64.46	4443/1000000	0.01	0.014	72.7	4916/4950 pairs	68/100 genes done
69.65	4811/1000000	0.01	0.014	70.9	4916/4950 pairs	68/100 genes done
74.64	5179/1000000	0.01	0.014	73.8	4916/4950 pairs	68/100 genes done
79.75	5548/1000000	0.01	0.014	72.1	4916/4950 pairs	68/100 genes done
84.93	5918/1000000	0.01	0.014	71.5	4916/4950 pairs	68/100 genes done
89.98	6287/1000000	0.01	0.014	73.0	4916/4950 pairs	68/100 genes done
95.03	6656/1000000	0.01	0.014	73.1	4916/4950 pairs	68/100 genes done
100.11	7026/1000000	0.01	0.014	72.8	4916/4950 pairs	68/100 genes done
105.23	7395/1000000	0.01	0.014	72.1	4916/4950 pairs	68/100 genes done
110.28	7764/1000000	0.01	0.014	73.1	4916/4950 pairs	68/100 genes done
115.28	8134/1000000	0.01	0.014	74.0	4916/4950 pairs	68/100 genes done
120.59	8503/1000000	0.01	0.014	69.4	4916/4950 pairs	68/100 genes done
125.76	8872/1000000	0.01	0.014	71.4	4916/4950 pairs	68/100 genes done
130.77	9242/1000000	0.01	0.014	73.9	4916/4950 pairs	68/100 genes done
135.81	9611/1000000	0.01	0.014	73.2	4916/4950 pairs	68/100 genes done
140.95	9980/1000000	0.01	0.014	71.8	4916/4950 pairs	68/100 genes done
145.97	10350/1000000	0.01	0.014	73.7	4916/4950 pairs	68/100 genes done
150.98	10719/1000000	0.01	0.014	73.7	4916/4950 pairs	68/100 genes done
155.98	11088/1000000	0.01	0.014	73.8	4916/4950 pairs	68/100 genes done
160.99	11458/1000000	0.01	0.014	73.9	4916/4950 pairs	68/100 genes done
165.99	11827/1000000	0.01	0.014	73.8	4916/4950 pairs	68/100 genes done
171.01	12197/1000000	0.01	0.014	73.7	4916/4950 pairs	68/100 genes done
176.02	12566/1000000	0.01	0.014	73.6	4916/4950 pairs	68/100 genes done
181.00	12936/1000000	0.01	0.013	74.2	4916/4950 pairs	68/100 genes done
186.10	13306/1000000	0.01	0.014	72.6	4916/4950 pairs	68/100 genes done
191.13	13677/1000000	0.01	0.014	73.7	4916/4950 pairs	68/100 genes done
196.23	14048/1000000	0.01	0.014	72.8	4916/4950 pairs	68/100 genes done
201.28	14418/1000000	0.01	0.014	73.3	4916/4950 pairs	68/100 genes done
206.32	14789/1000000	0.01	0.014	73.5	4916/4950 pairs	68/100 genes done
211.34	15160/1000000	0.01	0.014	74.0	4916/4950 pairs	68/100 genes done
216.36	15530/1000000	0.01	0.014	73.7	4916/4950 pairs	68/100 genes done
221.46	15901/1000000	0.01	0.014	72.8	4916/4950 pairs	68/100 genes done
226.68	16272/1000000	0.01	0.014	71.1	4916/4950 pairs	68/100 genes done
231.70	16642/1000000	0.01	0.014	73.6	4916/4950 pairs	68/100 genes done
236.68	17013/1000000	0.01	0.013	74.5	4916/4950 pairs	68/100 genes done
241.76	17385/1000000	0.01	0.014	73.2	4916/4950 pairs	68/100 genes done
246.98	17757/1000000	0.01	0.014	71.3	4916/4950 pairs	68/100 genes done
252.01	18130/1000000	0.01	0.013	74.2	4916/4950 pairs	68/100 genes done
257.13	18502/1000000	0.01	0.014	72.6	4916/4950 pairs	68/100 genes done
262.26	18874/1000000	0.01	0.014	72.5	4916/4950 pairs	68/100 genes done
267.39	19246/1000000	0.01	0.014	72.6	4916/4950 pairs	68/100 genes done
272.48	19618/1000000	0.01	0.014	73.1	4916/4950 pairs	68/100 genes done
277.52	19991/1000000	0.01	0.014	74.0	4916/4950 pairs	68/100 genes done
282.54	20363/1000000	0.01	0.013	74.1	4916/4950 pairs	68/100 genes done
287.56	20735/1000000	0.01	0.013	74.1	4916/4950 pairs	68/100 genes done
292.60	21107/1000000	0.01	0.014	73.7	4916/4950 pairs	68/100 genes done
297.66	21479/1000000	0.01	0.014	73.5	4916/4950 pairs	68/100 genes done
302.80	21852/1000000	0.01	0.014	72.6	4916/4950 pairs	68/100 genes done
308.20	22224/1000000	0.01	0.015	68.9	4916/4950 pairs	68/100 genes done
313.29	22596/1000000	0.01	0.014	73.1	4916/4950 pairs	68/100 genes done
318.39	22968/1000000	0.01	0.014	73.0	4916/4950 pairs	68/100 genes done
323.55	23340/1000000	0.01	0.014	72.0	4916/4950 pairs	68/100 genes done
328.84	23713/1000000	0.01	0.014	70.5	4916/4950 pairs	68/100 genes done
333.91	24085/1000000	0.01	0.014	73.4	4916/4950 pairs	68/100 genes done
338.99	24457/1000000	0.01	0.014	73.2	4916/4950 pairs	68/100 genes done
344.10	24829/1000000	0.01	0.014	72.9	4916/4950 pairs	68/100 genes done
349.44	25201/1000000	0.01	0.014	69.7	4916/4950 pairs	68/100 genes done
354.61	25574/1000000	0.01	0.014	72.1	4916/4950 pairs	68/100 genes done
359.89	25946/1000000	0.01	0.014	70.5	4916/4950 pairs	68/100 genes done
365.18	26318/1000000	0.01	0.014	70.3	4916/4950 pairs	68/100 genes done
370.28	26690/1000000	0.01	0.014	72.9	4916/4950 pairs	68/100 genes done
375.42	27062/1000000	0.01	0.014	72.4	4916/4950 pairs	68/100 genes done
380.57	27435/1000000	0.01	0.014	72.4	4916/4950 pairs	68/100 genes done
385.71	27807/1000000	0.01	0.014	72.3	4916/4950 pairs	68/100 genes done
390.86	28179/1000000	0.01	0.014	72.3	4916/4950 pairs	68/100 genes done
396.00	28551/1000000	0.01	0.014	72.3	4916/4950 pairs	68/100 genes done
401.16	28923/1000000	0.01	0.014	72.2	4916/4950 pairs	68/100 genes done
406.32	29296/1000000	0.01	0.014	72.3	4916/4950 pairs	68/100 genes done
411.49	29668/1000000	0.01	0.014	71.9	4916/4950 pairs	68/100 genes done
416.65	30040/1000000	0.01	0.014	72.1	4916/4950 pairs	68/100 genes done
422.02	30412/1000000	0.01	0.014	69.2	4916/4950 pairs	68/100 genes done
427.14	30784/1000000	0.01	0.014	72.7	4916/4950 pairs	68/100 genes done
432.27	31157/1000000	0.01	0.014	72.7	4916/4950 pairs	68/100 genes done
437.39	31529/1000000	0.01	0.014	72.7	4916/4950 pairs	68/100 genes done
442.61	31901/1000000	0.01	0.014	71.2	4916/4950 pairs	68/100 genes done
447.74	32273/1000000	0.01	0.014	72.5	4916/4950 pairs	68/100 genes done
452.90	32645/1000000	0.01	0.014	72.2	4916/4950 pairs	68/100 genes done
458.09	33018/1000000	0.01	0.014	71.9	4916/4950 pairs	68/100 genes done
463.23	33390/1000000	0.01	0.014	72.3	4916/4950 pairs	68/100 genes done
468.38	33762/1000000	0.01	0.014	72.2	4916/4950 pairs	68/100 genes done
473.55	34134/1000000	0.01	0.014	72.0	4916/4950 pairs	68/100 genes done
478.76	34506/1000000	0.01	0.014	71.5	4916/4950 pairs	68/100 genes done
484.03	34879/1000000	0.01	0.014	70.8	4916/4950 pairs	68/100 genes done
489.25	35251/1000000	0.01	0.014	71.2	4916/4950 pairs	68/100 genes done
494.48	35623/1000000	0.01	0.014	71.1	4916/4950 pairs	68/100 genes done
499.72	35995/1000000	0.01	0.014	71.0	4916/4950 pairs	68/100 genes done
504.94	36367/1000000	0.01	0.014	71.2	4916/4950 pairs	68/100 genes done
510.18	36740/1000000	0.01	0.014	71.3	4916/4950 pairs	68/100 genes done
515.41	37112/1000000	0.01	0.014	71.1	4916/4950 pairs	68/100 genes done
520.62	37484/1000000	0.01	0.014	71.3	4916/4950 pairs	68/100 genes done
525.86	37856/1000000	0.01	0.014	71.1	4916/4950 pairs	68/100 genes done
531.09	38229/1000000	0.01	0.014	71.3	4916/4950 pairs	68/100 genes done
536.31	38601/1000000	0.01	0.014	71.3	4916/4950 pairs	68/100 genes done
541.70	38973/1000000	0.01	0.014	69.0	4916/4950 pairs	68/100 genes done
546.84	39345/1000000	0.01	0.014	72.4	4916/4950 pairs	68/100 genes done
551.98	39717/1000000	0.01	0.014	72.4	4916/4950 pairs	68/100 genes done
557.27	40090/1000000	0.01	0.014	70.5	4916/4950 pairs	68/100 genes done
562.51	40462/1000000	0.01	0.014	71.0	4916/4950 pairs	68/100 genes done
567.66	40834/1000000	0.01	0.014	72.2	4916/4950 pairs	68/100 genes done
572.66	41206/1000000	0.01	0.013	74.3	4916/4950 pairs	68/100 genes done
577.82	41578/1000000	0.01	0.014	72.2	4916/4950 pairs	68/100 genes done
583.00	41951/1000000	0.01	0.014	72.0	4916/4950 pairs	68/100 genes done
588.10	42323/1000000	0.01	0.014	72.9	4916/4950 pairs	68/100 genes done
593.25	42695/1000000	0.01	0.014	72.2	4916/4950 pairs	68/100 genes done
598.53	43067/1000000	0.01	0.014	70.4	4916/4950 pairs	68/100 genes done
603.69	43439/1000000	0.01	0.014	72.2	4916/4950 pairs	68/100 genes done
608.84	43812/1000000	0.01	0.014	72.3	4916/4950 pairs	68/100 genes done
613.98	44184/1000000	0.01	0.014	72.4	4916/4950 pairs	68/100 genes done
619.09	44556/1000000	0.01	0.014	72.8	4916/4950 pairs	68/100 genes done
624.18	44928/1000000	0.01	0.014	73.1	4916/4950 pairs	68/100 genes done
629.28	45300/1000000	0.01	0.014	72.9	4916/4950 pairs	68/100 genes done
634.41	45673/1000000	0.01	0.014	72.8	4916/4950 pairs	68/100 genes done
639.50	46045/1000000	0.01	0.014	73.0	4916/4950 pairs	68/100 genes done
644.68	46417/1000000	0.01	0.014	71.8	4916/4950 pairs	68/100 genes done
649.82	46789/1000000	0.01	0.014	72.4	4916/4950 pairs	68/100 genes done
655.03	47161/1000000	0.01	0.014	71.5	4916/4950 pairs	68/100 genes done
660.20	47534/1000000	0.01	0.014	72.1	4916/4950 pairs	68/100 genes done
665.45	47906/1000000	0.01	0.014	70.9	4916/4950 pairs	68/100 genes done
670.69	48278/1000000	0.01	0.014	71.1	4916/4950 pairs	68/100 genes done
675.76	48650/1000000	0.01	0.014	73.3	4916/4950 pairs	68/100 genes done
680.82	49022/1000000	0.01	0.014	73.6	4916/4950 pairs	68/100 genes done
685.96	49395/1000000	0.01	0.014	72.5	4916/4950 pairs	68/100 genes done
691.00	49767/1000000	0.01	0.014	73.9	4916/4950 pairs	68/100 genes done
696.05	50139/1000000	0.01	0.014	73.7	4916/4950 pairs	68/100 genes done
701.10	50511/1000000	0.01	0.014	73.6	4916/4950 pairs	68/100 genes done
706.16	50883/1000000	0.01	0.014	73.5	4916/4950 pairs	68/100 genes done
711.26	51256/1000000	0.01	0.014	73.1	4916/4950 pairs	68/100 genes done
716.78	51628/1000000	0.01	0.015	67.4	4916/4950 pairs	68/100 genes done
722.02	52000/1000000	0.01	0.014	70.9	4916/4950 pairs	68/100 genes done
727.25	52372/1000000	0.01	0.014	71.2	4916/4950 pairs	68/100 genes done
732.47	52744/1000000	0.01	0.014	71.3	4916/4950 pairs	68/100 genes done
737.65	53117/1000000	0.01	0.014	72.0	4916/4950 pairs	68/100 genes done
742.83	53489/1000000	0.01	0.014	71.8	4916/4950 pairs	68/100 genes done
748.03	53861/1000000	0.01	0.014	71.6	4916/4950 pairs	68/100 genes done
753.33	54233/1000000	0.01	0.014	70.2	4916/4950 pairs	68/100 genes done
758.58	54605/1000000	0.01	0.014	70.9	4916/4950 pairs	68/100 genes done
763.76	54978/1000000	0.01	0.014	71.9	4916/4950 pairs	68/100 genes done
769.12	55350/1000000	0.01	0.014	69.5	4916/4950 pairs	68/100 genes done
774.29	55722/1000000	0.01	0.014	71.9	4916/4950 pairs	68/100 genes done
779.40	56094/1000000	0.01	0.014	72.9	4916/4950 pairs	68/100 genes done
784.70	56466/1000000	0.01	0.014	70.2	4916/4950 pairs	68/100 genes done
789.75	56839/1000000	0.01	0.014	73.8	4916/4950 pairs	68/100 genes done
794.87	57211/1000000	0.01	0.014	72.6	4916/4950 pairs	68/100 genes done
800.06	57583/1000000	0.01	0.014	71.7	4916/4950 pairs	68/100 genes done
805.35	57955/1000000	0.01	0.014	70.3	4916/4950 pairs	68/100 genes done
810.53	58327/1000000	0.01	0.014	71.9	4916/4950 pairs	68/100 genes done
815.71	58700/1000000	0.01	0.014	72.0	4916/4950 pairs	68/100 genes done
820.87	59072/1000000	0.01	0.014	72.1	4916/4950 pairs	68/100 genes done
826.08	59444/1000000	0.01	0.014	71.5	4916/4950 pairs	68/100 genes done
831.39	59816/1000000	0.01	0.014	69.9	4916/4950 pairs	68/100 genes done
836.77	60188/1000000	0.01	0.014	69.2	4916/4950 pairs	68/100 genes done
841.80	60561/1000000	0.01	0.014	74.0	4916/4950 pairs	68/100 genes done
846.86	60933/1000000	0.01	0.014	73.7	4916/4950 pairs	68/100 genes done
851.94	61305/1000000	0.01	0.014	73.2	4916/4950 pairs	68/100 genes done
857.03	61677/1000000	0.01	0.014	73.1	4916/4950 pairs	68/100 genes done
862.12	62049/1000000	0.01	0.014	73.0	4916/4950 pairs	68/100 genes done
867.25	62422/1000000	0.01	0.014	72.7	4916/4950 pairs	68/100 genes done
872.40	62794/1000000	0.01	0.014	72.2	4916/4950 pairs	68/100 genes done
877.66	63166/1000000	0.01	0.014	70.8	4916/4950 pairs	68/100 genes done
882.89	63538/1000000	0.01	0.014	71.1	4916/4950 pairs	68/100 genes done
887.93	63910/1000000	0.01	0.014	73.9	4916/4950 pairs	68/100 genes done
893.03	64283/1000000	0.01	0.014	73.0	4916/4950 pairs	68/100 genes done
898.28	64655/1000000	0.01	0.014	70.9	4916/4950 pairs	68/100 genes done
903.36	65027/1000000	0.01	0.014	73.3	4916/4950 pairs	68/100 genes done
908.44	65399/1000000	0.01	0.014	73.2	4916/4950 pairs	68/100 genes done
913.48	65771/1000000	0.01	0.014	73.8	4916/4950 pairs	68/100 genes done
918.53	66144/1000000	0.01	0.014	73.9	4916/4950 pairs	68/100 genes done
923.60	66516/1000000	0.01	0.014	73.4	4916/4950 pairs	68/100 genes done
928.60	66888/1000000	0.01	0.013	74.3	4916/4950 pairs	68/100 genes done
933.62	67260/1000000	0.01	0.013	74.1	4916/4950 pairs	68/100 genes done
938.72	67633/1000000	0.01	0.014	73.2	4916/4950 pairs	68/100 genes done
943.80	68005/1000000	0.01	0.014	73.3	4916/4950 pairs	68/100 genes done
948.90	68377/1000000	0.01	0.014	72.9	4916/4950 pairs	68/100 genes done
954.22	68749/1000000	0.01	0.014	69.9	4916/4950 pairs	68/100 genes done
959.36	69121/1000000	0.01	0.014	72.4	4916/4950 pairs	68/100 genes done
964.43	69494/1000000	0.01	0.014	73.6	4916/4950 pairs	68/100 genes done
969.47	69866/1000000	0.01	0.014	73.8	4916/4950 pairs	68/100 genes done
974.54	70238/1000000	0.01	0.014	73.4	4916/4950 pairs	68/100 genes done
980.01	70610/1000000	0.01	0.015	68.0	4916/4950 pairs	68/100 genes done
985.09	70982/1000000	0.01	0.014	73.2	4916/4950 pairs	68/100 genes done
990.19	71355/1000000	0.01	0.014	73.2	4916/4950 pairs	68/100 genes done
995.45	71727/1000000	0.01	0.014	70.6	4916/4950 pairs	68/100 genes done
1000.56	72099/1000000	0.01	0.014	72.8	4916/4950 pairs	68/100 genes done
1005.70	72471/1000000	0.01	0.014	72.4	4916/4950 pairs	68/100 genes done
1011.08	72843/1000000	0.01	0.014	69.2	4916/4950 pairs	68/100 genes done
1016.19	73216/1000000	0.01	0.014	72.9	4916/4950 pairs	68/100 genes done
1021.53	73588/1000000	0.01	0.014	69.6	4916/4950 pairs	68/100 genes done
1026.66	73960/1000000	0.01	0.014	72.5	4916/4950 pairs	68/100 genes done
1031.83	74332/1000000	0.01	0.014	72.0	4916/4950 pairs	68/100 genes done
1036.92	74704/1000000	0.01	0.014	73.2	4916/4950 pairs	68/100 genes done
1042.10	75077/1000000	0.01	0.014	71.9	4916/4950 pairs	68/100 genes done
1047.18	75449/1000000	0.01	0.014	73.2	4916/4950 pairs	68/100 genes done
1052.27	75821/1000000	0.01	0.014	73.2	4916/4950 pairs	68/100 genes done
1057.33	76193/1000000	0.01	0.014	73.5	4916/4950 pairs	68/100 genes done
1062.40	76565/1000000	0.01	0.014	73.3	4916/4950 pairs	68/100 genes done
1067.51	76938/1000000	0.01	0.014	73.0	4916/4950 pairs	68/100 genes done
1072.68	77310/1000000	0.01	0.014	72.0	4916/4950 pairs	68/100 genes done
1078.02	77682/1000000	0.01	0.014	69.7	4916/4950 pairs	68/100 genes done
1083.09	78054/1000000	0.01	0.014	73.3	4916/4950 pairs	68/100 genes done
1088.22	78426/1000000	0.01	0.014	72.4	4916/4950 pairs	68/100 genes done
1093.32	78799/1000000	0.01	0.014	73.1	4916/4950 pairs	68/100 genes done
1098.45	79171/1000000	0.01	0.014	72.6	4916/4950 pairs	68/100 genes done
1103.57	79543/1000000	0.01	0.014	72.7	4916/4950 pairs	68/100 genes done
1108.63	79915/1000000	0.01	0.014	73.6	4916/4950 pairs	68/100 genes done
1113.78	80287/1000000	0.01	0.014	72.3	4916/4950 pairs	68/100 genes done
1118.86	80660/1000000	0.01	0.014	73.3	4916/4950 pairs	68/100 genes done
1124.08	81032/1000000	0.01	0.014	71.3	4916/4950 pairs	68/100 genes done
1129.15	81404/1000000	0.01	0.014	73.4	4916/4950 pairs	68/100 genes done
1134.19	81776/1000000	0.01	0.014	73.7	4916/4950 pairs	68/100 genes done
1139.38	82148/1000000	0.01	0.014	71.7	4916/4950 pairs	68/100 genes done
1144.44	82521/1000000	0.01	0.014	73.7	4916/4950 pairs	68/100 genes done
1149.53	82893/1000000	0.01	0.014	73.1	4916/4950 pairs	68/100 genes done
1154.63	83265/1000000	0.01	0.014	72.9	4916/4950 pairs	68/100 genes done
1159.69	83637/1000000	0.01	0.014	73.6	4916/4950 pairs	68/100 genes done
1164.98	84009/1000000	0.01	0.014	70.2	4916/4950 pairs	68/100 genes done
1170.12	84382/1000000	0.01	0.014	72.7	4916/4950 pairs	68/100 genes done
1175.23	84754/1000000	0.01	0.014	72.7	4916/4950 pairs	68/100 genes done
1180.33	85126/1000000	0.01	0.014	73.0	4916/4950 pairs	68/100 genes done
1185.41	85498/1000000	0.01	0.014	73.3	4916/4950 pairs	68/100 genes done
1190.82	85870/1000000	0.01	0.015	68.7	4916/4950 pairs	68/100 genes done
1195.89	86243/1000000	0.01	0.014	73.6	4916/4950 pairs	68/100 genes done
1200.90	86615/1000000	0.01	0.013	74.3	4916/4950 pairs	68/100 genes done
1205.90	86987/1000000	0.01	0.013	74.4	4916/4950 pairs	68/100 genes done
1210.91	87359/1000000	0.01	0.013	74.2	4916/4950 pairs	68/100 genes done
1215.92	87731/1000000	0.01	0.013	74.3	4916/4950 pairs	68/100 genes done
1221.17	88104/1000000	0.01	0.014	71.1	4916/4950 pairs	68/100 genes done
1226.27	88476/1000000	0.01	0.014	73.0	4916/4950 pairs	68/100 genes done
1231.44	88848/1000000	0.01	0.014	71.9	4916/4950 pairs	68/100 genes done
1236.66	89220/1000000	0.01	0.014	71.2	4916/4950 pairs	68/100 genes done
1241.84	89592/1000000	0.01	0.014	71.9	4916/4950 pairs	68/100 genes done
1247.04	89965/1000000	0.01	0.014	71.6	4916/4950 pairs	68/100 genes done
1252.14	90337/1000000	0.01	0.014	72.9	4916/4950 pairs	68/100 genes done
1257.32	90709/1000000	0.01	0.014	71.9	4916/4950 pairs	68/100 genes done
1262.41	91081/1000000	0.01	0.014	73.1	4916/4950 pairs	68/100 genes done
1267.49	91453/1000000	0.01	0.014	73.2	4916/4950 pairs	68/100 genes done
1272.61	91826/1000000	0.01	0.014	72.9	4916/4950 pairs	68/100 genes done
1277.79	92198/1000000	0.01	0.014	71.8	4916/4950 pairs	68/100 genes done
1282.99	92570/1000000	0.01	0.014	71.6	4916/4950 pairs	68/100 genes done
1288.27	92942/1000000	0.01	0.014	70.4	4916/4950 pairs	68/100 genes done
1293.44	93314/1000000	0.01	0.014	72.0	4916/4950 pairs	68/100 genes done
1298.78	93687/1000000	0.01	0.014	69.8	4916/4950 pairs	68/100 genes done
1304.00	94059/1000000	0.01	0.014	71.2	4916/4950 pairs	68/100 genes done
1309.27	94431/1000000	0.01	0.014	70.6	4916/4950 pairs	68/100 genes done
1314.73	94803/1000000	0.01	0.015	68.1	4916/4950 pairs	68/100 genes done
1320.01	95176/1000000	0.01	0.014	70.7	4916/4950 pairs	68/100 genes done
1325.26	95548/1000000	0.01	0.014	70.8	4916/4950 pairs	68/100 genes done
1330.53	95920/1000000	0.01	0.014	70.6	4916/4950 pairs	68/100 genes done
1335.80	96292/1000000	0.01	0.014	70.6	4916/4950 pairs	68/100 genes done
1341.08	96664/1000000	0.01	0.014	70.6	4916/4950 pairs	68/100 genes done
1346.36	97037/1000000	0.01	0.014	70.5	4916/4950 pairs	68/100 genes done
1351.65	97409/1000000	0.01	0.014	70.4	4916/4950 pairs	68/100 genes done
1356.94	97781/1000000	0.01	0.014	70.3	4916/4950 pairs	68/100 genes done
1362.22	98153/1000000	0.01	0.014	70.4	4916/4950 pairs	68/100 genes done
1367.52	98525/1000000	0.01	0.014	70.3	4916/4950 pairs	68/100 genes done
1373.02	98898/1000000	0.01	0.015	67.7	4916/4950 pairs	68/100 genes done
1378.25	99270/1000000	0.01	0.014	71.2	4916/4950 pairs	68/100 genes done
1383.37	99642/1000000	0.01	0.014	72.7	4916/4950 pairs	68/100 genes done
1388.49	100014/1000000	0.01	0.014	72.6	4916/4950 pairs	68/100 genes done
1393.63	100386/1000000	0.01	0.014	72.4	4916/4950 pairs	68/100 genes done
1398.82	100759/1000000	0.01	0.014	71.9	4916/4950 pairs	68/100 genes done
1404.16	101131/1000000	0.01	0.014	69.7	4916/4950 pairs	68/100 genes done
1409.30	101503/1000000	0.01	0.014	72.3	4916/4950 pairs	68/100 genes done
1414.53	101875/1000000	0.01	0.014	71.1	4916/4950 pairs	68/100 genes done
1419.65	102247/1000000	0.01	0.014	72.8	4916/4950 pairs	68/100 genes done
1424.78	102620/1000000	0.01	0.014	72.6	4916/4950 pairs	68/100 genes done
1429.94	102992/1000000	0.01	0.014	72.0	4916/4950 pairs	68/100 genes done
1435.08	103364/1000000	0.01	0.014	72.5	4916/4950 pairs	68/100 genes done
1440.21	103736/1000000	0.01	0.014	72.5	4916/4950 pairs	68/100 genes done
1445.33	104108/1000000	0.01	0.014	72.6	4916/4950 pairs	68/100 genes done
1450.45	104481/1000000	0.01	0.014	72.8	4916/4950 pairs	68/100 genes done
1455.62	104853/1000000	0.01	0.014	72.1	4916/4950 pairs	68/100 genes done
1460.79	105225/1000000	0.01	0.014	71.9	4916/4950 pairs	68/100 genes done
1466.00	105597/1000000	0.01	0.014	71.4	4916/4950 pairs	68/100 genes done
1471.34	105969/1000000	0.01	0.014	69.6	4916/4950 pairs	68/100 genes done
1476.43	106342/1000000	0.01	0.014	73.3	4916/4950 pairs	68/100 genes done
1481.47	106714/1000000	0.01	0.014	73.9	4916/4950 pairs	68/100 genes done
1486.65	107086/1000000	0.01	0.014	71.8	4916/4950 pairs	68/100 genes done
1491.77	107458/1000000	0.01	0.014	72.5	4916/4950 pairs	68/100 genes done
1496.93	107830/1000000	0.01	0.014	72.2	4916/4950 pairs	68/100 genes done
1502.07	108203/1000000	0.01	0.014	72.6	4916/4950 pairs	68/100 genes done
1507.31	108575/1000000	0.01	0.014	71.0	4916/4950 pairs	68/100 genes done
1512.45	108947/1000000	0.01	0.014	72.4	4916/4950 pairs	68/100 genes done
1517.50	109319/1000000	0.01	0.014	73.7	4916/4950 pairs	68/100 genes done
1522.68	109691/1000000	0.01	0.014	71.8	4916/4950 pairs	68/100 genes done
1527.92	110064/1000000	0.01	0.014	71.2	4916/4950 pairs	68/100 genes done
1533.05	110436/1000000	0.01	0.014	72.5	4916/4950 pairs	68/100 genes done
1538.12	110808/1000000	0.01	0.014	73.4	4916/4950 pairs	68/100 genes done
1543.18	111180/1000000	0.01	0.014	73.5	4916/4950 pairs	68/100 genes done
1548.31	111552/1000000	0.01	0.014	72.5	4916/4950 pairs	68/100 genes done
1553.72	111925/1000000	0.01	0.015	68.9	4916/4950 pairs	68/100 genes done
1558.83	112297/1000000	0.01	0.014	72.8	4916/4950 pairs	68/100 genes done
1563.94	112669/1000000	0.01	0.014	72.8	4916/4950 pairs	68/100 genes done
1569.08	113041/1000000	0.01	0.014	72.4	4916/4950 pairs	68/100 genes done
1574.25	113413/1000000	0.01	0.014	72.0	4916/4950 pairs	68/100 genes done
1579.62	113786/1000000	0.01	0.014	69.5	4916/4950 pairs	68/100 genes done
1584.75	114158/1000000	0.01	0.014	72.5	4916/4950 pairs	68/100 genes done
1589.85	114530/1000000	0.01	0.014	72.8	4916/4950 pairs	68/100 genes done
1594.96	114902/1000000	0.01	0.014	72.9	4916/4950 pairs	68/100 genes done
1600.07	115274/1000000	0.01	0.014	72.8	4916/4950 pairs	68/100 genes done
1605.20	115647/1000000	0.01	0.014	72.7	4916/4950 pairs	68/100 genes done
1610.47	116019/1000000	0.01	0.014	70.6	4916/4950 pairs	68/100 genes done
1615.61	116391/1000000	0.01	0.014	72.4	4916/4950 pairs	68/100 genes done
1620.64	116763/1000000	0.01	0.014	74.0	4916/4950 pairs	68/100 genes done
1625.66	117135/1000000	0.01	0.014	74.1	4916/4950 pairs	68/100 genes done
1630.70	117508/1000000	0.01	0.014	74.0	4916/4950 pairs	68/100 genes done
1635.76	117880/1000000	0.01	0.014	73.5	4916/4950 pairs	68/100 genes done
1640.78	118252/1000000	0.01	0.013	74.1	4916/4950 pairs	68/100 genes done
1645.91	118624/1000000	0.01	0.014	72.6	4916/4950 pairs	68/100 genes done
1651.18	118996/1000000	0.01	0.014	70.6	4916/4950 pairs	68/100 genes done
1656.23	119369/1000000	0.01	0.014	74.0	4916/4950 pairs	68/100 genes done
1661.26	119741/1000000	0.01	0.014	73.9	4916/4950 pairs	68/100 genes done
1666.34	120113/1000000	0.01	0.014	73.3	4916/4950 pairs	68/100 genes done
1671.39	120485/1000000	0.01	0.014	73.6	4916/4950 pairs	68/100 genes done
1676.77	120857/1000000	0.01	0.014	69.1	4916/4950 pairs	68/100 genes done
1681.93	121230/1000000	0.01	0.014	72.3	4916/4950 pairs	68/100 genes done
1687.02	121602/1000000	0.01	0.014	73.1	4916/4950 pairs	68/100 genes done
1692.26	121974/1000000	0.01	0.014	70.9	4916/4950 pairs	68/100 genes done
1697.30	122346/1000000	0.01	0.014	73.8	4916/4950 pairs	68/100 genes done
1702.35	122719/1000000	0.01	0.014	73.9	4916/4950 pairs	68/100 genes done
1707.36	123091/1000000	0.01	0.013	74.2	4916/4950 pairs	68/100 genes done
1712.38	123463/1000000	0.01	0.013	74.1	4916/4950 pairs	68/100 genes done
1717.42	123835/1000000	0.01	0.014	73.8	4916/4950 pairs	68/100 genes done
1722.45	124207/1000000	0.01	0.014	74.0	4916/4950 pairs	68/100 genes done
1727.46	124580/1000000	0.01	0.013	74.4	4917/4950 pairs	69/100 genes done
1732.48	124952/1000000	0.01	0.013	74.1	4917/4950 pairs	69/100 genes done
1737.42	125324/1000000	0.01	0.013	75.4	4917/4950 pairs	69/100 genes done
1742.41	125701/1000000	0.01	0.013	75.5	4917/4950 pairs	69/100 genes done
1747.42	126078/1000000	0.01	0.013	75.4	4917/4950 pairs	69/100 genes done
1752.44	126456/1000000	0.01	0.013	75.2	4917/4950 pairs	69/100 genes done
1757.46	126833/1000000	0.01	0.013	75.1	4917/4950 pairs	69/100 genes done
1762.50	127211/1000000	0.01	0.013	75.0	4917/4950 pairs	69/100 genes done
1767.66	127588/1000000	0.01	0.014	73.1	4917/4950 pairs	69/100 genes done
1772.76	127966/1000000	0.01	0.014	74.0	4917/4950 pairs	69/100 genes done
1777.83	128343/1000000	0.01	0.013	74.4	4917/4950 pairs	69/100 genes done
1782.89	128720/1000000	0.01	0.013	74.5	4917/4950 pairs	69/100 genes done
1788.02	129098/1000000	0.01	0.014	73.7	4917/4950 pairs	69/100 genes done
1793.45	129475/1000000	0.01	0.014	69.5	4917/4950 pairs	69/100 genes done
1798.64	129853/1000000	0.01	0.014	72.9	4917/4950 pairs	69/100 genes done
1803.85	130230/1000000	0.01	0.014	72.2	4917/4950 pairs	69/100 genes done
1808.91	130607/1000000	0.01	0.013	74.5	4917/4950 pairs	69/100 genes done
1813.92	130985/1000000	0.01	0.013	75.5	4917/4950 pairs	69/100 genes done
1818.92	131362/1000000	0.01	0.013	75.3	4917/4950 pairs	69/100 genes done
1823.96	131740/1000000	0.01	0.013	75.0	4917/4950 pairs	69/100 genes done
1829.24	132117/1000000	0.01	0.014	71.4	4917/4950 pairs	69/100 genes done
1834.29	132494/1000000	0.01	0.013	74.6	4917/4950 pairs	69/100 genes done
1839.34	132872/1000000	0.01	0.013	74.9	4917/4950 pairs	69/100 genes done
1844.41	133249/1000000	0.01	0.013	74.4	4917/4950 pairs	69/100 genes done
1849.75	133627/1000000	0.01	0.014	70.8	4917/4950 pairs	69/100 genes done
1854.85	134004/1000000	0.01	0.014	73.8	4917/4950 pairs	69/100 genes done
1859.98	134382/1000000	0.01	0.014	73.8	4917/4950 pairs	69/100 genes done
1865.05	134759/1000000	0.01	0.013	74.2	4917/4950 pairs	69/100 genes done
1870.15	135136/1000000	0.01	0.014	74.1	4917/4950 pairs	69/100 genes done
1875.26	135514/1000000	0.01	0.014	73.9	4917/4950 pairs	69/100 genes done
1880.39	135891/1000000	0.01	0.014	73.6	4917/4950 pairs	69/100 genes done
1885.66	136269/1000000	0.01	0.014	71.7	4917/4950 pairs	69/100 genes done
1890.90	136646/1000000	0.01	0.014	72.0	4917/4950 pairs	69/100 genes done
1896.04	137023/1000000	0.01	0.014	73.3	4917/4950 pairs	69/100 genes done
1901.20	137401/1000000	0.01	0.014	73.2	4917/4950 pairs	69/100 genes done
1906.40	137778/1000000	0.01	0.014	72.6	4917/4950 pairs	69/100 genes done
1911.88	138156/1000000	0.01	0.015	68.9	4917/4950 pairs	69/100 genes done
1917.25	138533/1000000	0.01	0.014	70.3	4917/4950 pairs	69/100 genes done
1922.40	138910/1000000	0.01	0.014	73.2	4917/4950 pairs	69/100 genes done
1927.92	139288/1000000	0.01	0.015	68.4	4917/4950 pairs	69/100 genes done
1933.18	139665/1000000	0.01	0.014	71.6	4917/4950 pairs	69/100 genes done
1938.21	140043/1000000	0.01	0.013	75.2	4917/4950 pairs	69/100 genes done
1943.21	140420/1000000	0.01	0.013	75.4	4917/4950 pairs	69/100 genes done
1948.23	140798/1000000	0.01	0.013	75.3	4917/4950 pairs	69/100 genes done
1953.28	141175/1000000	0.01	0.013	74.7	4917/4950 pairs	69/100 genes done
1958.38	141552/1000000	0.01	0.014	73.8	4917/4950 pairs	69/100 genes done
1963.52	141930/1000000	0.01	0.014	73.6	4917/4950 pairs	69/100 genes done
1968.77	142307/1000000	0.01	0.014	71.9	4917/4950 pairs	69/100 genes done
1974.07	142685/1000000	0.01	0.014	71.3	4917/4950 pairs	69/100 genes done
1979.28	143062/1000000	0.01	0.014	72.3	4917/4950 pairs	69/100 genes done
1984.50	143439/1000000	0.01	0.014	72.3	4917/4950 pairs	69/100 genes done
1989.56	143817/1000000	0.01	0.013	74.7	4917/4950 pairs	69/100 genes done
1994.61	144194/1000000	0.01	0.013	74.7	4917/4950 pairs	69/100 genes done
1999.72	144572/1000000	0.01	0.014	74.0	4917/4950 pairs	69/100 genes done
2004.81	144949/1000000	0.01	0.014	74.0	4917/4950 pairs	69/100 genes done
2009.83	145326/1000000	0.01	0.013	75.1	4917/4950 pairs	69/100 genes done
2014.85	145704/1000000	0.01	0.013	75.4	4917/4950 pairs	69/100 genes done
2019.88	146081/1000000	0.01	0.013	74.9	4917/4950 pairs	69/100 genes done
2024.98	146459/1000000	0.01	0.014	74.1	4917/4950 pairs	69/100 genes done
2030.36	146836/1000000	0.01	0.014	70.1	4917/4950 pairs	69/100 genes done
2035.80	147213/1000000	0.01	0.014	69.4	4917/4950 pairs	69/100 genes done
2041.23	147591/1000000	0.01	0.014	69.6	4917/4950 pairs	69/100 genes done
2046.25	147968/1000000	0.01	0.013	75.1	4917/4950 pairs	69/100 genes done
2051.29	148346/1000000	0.01	0.013	75.0	4917/4950 pairs	69/100 genes done
2056.35	148723/1000000	0.01	0.013	74.5	4917/4950 pairs	69/100 genes done
2061.40	149101/1000000	0.01	0.013	75.0	4917/4950 pairs	69/100 genes done
2066.42	149478/1000000	0.01	0.013	75.0	4917/4950 pairs	69/100 genes done
2071.44	149855/1000000	0.01	0.013	75.1	4917/4950 pairs	69/100 genes done
2076.48	150233/1000000	0.01	0.013	75.0	4917/4950 pairs	69/100 genes done
2081.53	150610/1000000	0.01	0.013	74.7	4917/4950 pairs	69/100 genes done
2086.58	150988/1000000	0.01	0.013	74.8	4917/4950 pairs	69/100 genes done
2091.66	151365/1000000	0.01	0.013	74.2	4917/4950 pairs	69/100 genes done
2096.68	151742/1000000	0.01	0.013	75.1	4917/4950 pairs	69/100 genes done
2101.81	152120/1000000	0.01	0.014	73.7	4917/4950 pairs	69/100 genes done
2106.98	152497/1000000	0.01	0.014	72.9	4917/4950 pairs	69/100 genes done
2112.15	152875/1000000	0.01	0.014	73.1	4917/4950 pairs	69/100 genes done
2117.25	153252/1000000	0.01	0.014	73.9	4917/4950 pairs	69/100 genes done
2122.42	153629/1000000	0.01	0.014	73.0	4917/4950 pairs	69/100 genes done
2127.54	154007/1000000	0.01	0.014	73.8	4917/4950 pairs	69/100 genes done
2132.61	154384/1000000	0.01	0.013	74.4	4917/4950 pairs	69/100 genes done
2137.71	154762/1000000	0.01	0.013	74.1	4917/4950 pairs	69/100 genes done
2142.89	155139/1000000	0.01	0.014	72.7	4917/4950 pairs	69/100 genes done
2148.14	155517/1000000	0.01	0.014	72.1	4917/4950 pairs	69/100 genes done
2153.42	155894/1000000	0.01	0.014	71.4	4917/4950 pairs	69/100 genes done
2158.66	156271/1000000	0.01	0.014	72.0	4917/4950 pairs	69/100 genes done
2163.67	156649/1000000	0.01	0.013	75.5	4917/4950 pairs	69/100 genes done
2168.66	157026/1000000	0.01	0.013	75.4	4917/4950 pairs	69/100 genes done
2173.69	157404/1000000	0.01	0.013	75.2	4917/4950 pairs	69/100 genes done
2178.70	157781/1000000	0.01	0.013	75.2	4917/4950 pairs	69/100 genes done
2183.70	158159/1000000	0.01	0.013	75.6	4917/4950 pairs	69/100 genes done
2188.70	158537/1000000	0.01	0.013	75.6	4917/4950 pairs	69/100 genes done
2193.70	158914/1000000	0.01	0.013	75.5	4917/4950 pairs	69/100 genes done
2198.73	159292/1000000	0.01	0.013	75.0	4917/4950 pairs	69/100 genes done
2203.77	159671/1000000	0.01	0.013	75.2	4917/4950 pairs	69/100 genes done
2208.99	160049/1000000	0.01	0.014	72.4	4917/4950 pairs	69/100 genes done
2214.02	160427/1000000	0.01	0.013	75.2	4917/4950 pairs	69/100 genes done
2219.03	160805/1000000	0.01	0.013	75.5	4917/4950 pairs	69/100 genes done
2224.02	161183/1000000	0.01	0.013	75.7	4917/4950 pairs	69/100 genes done
2229.04	161562/1000000	0.01	0.013	75.5	4917/4950 pairs	69/100 genes done
2234.07	161940/1000000	0.01	0.013	75.2	4917/4950 pairs	69/100 genes done
2239.11	162318/1000000	0.01	0.013	75.0	4917/4950 pairs	69/100 genes done
2244.37	162697/1000000	0.01	0.014	72.1	4917/4950 pairs	69/100 genes done
2249.56	163075/1000000	0.01	0.014	72.8	4917/4950 pairs	69/100 genes done
2254.67	163454/1000000	0.01	0.013	74.1	4917/4950 pairs	69/100 genes done
2259.73	163832/1000000	0.01	0.013	74.8	4917/4950 pairs	69/100 genes done
2264.87	164211/1000000	0.01	0.014	73.8	4917/4950 pairs	69/100 genes done
2270.24	164589/1000000	0.01	0.014	70.4	4917/4950 pairs	69/100 genes done
2275.58	164967/1000000	0.01	0.014	70.8	4917/4950 pairs	69/100 genes done
2280.72	165346/1000000	0.01	0.014	73.7	4917/4950 pairs	69/100 genes done
2285.82	165724/1000000	0.01	0.014	74.0	4917/4950 pairs	69/100 genes done
2290.91	166103/1000000	0.01	0.013	74.5	4917/4950 pairs	69/100 genes done
2296.00	166481/1000000	0.01	0.013	74.2	4917/4950 pairs	69/100 genes done
2301.05	166860/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
2306.04	167238/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
2311.06	167617/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
2316.09	167995/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
2321.17	168374/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
2326.27	168753/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
2331.31	169131/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
2336.36	169510/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
2341.40	169889/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
2346.45	170267/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
2351.52	170646/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
2356.73	171025/1000000	0.01	0.014	72.6	4918/4950 pairs	70/100 genes done
2361.78	171403/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
2366.84	171782/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
2371.90	172161/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
2376.99	172540/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
2382.04	172918/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
2387.16	173297/1000000	0.01	0.014	74.0	4918/4950 pairs	70/100 genes done
2392.55	173676/1000000	0.01	0.014	70.3	4918/4950 pairs	70/100 genes done
2397.67	174054/1000000	0.01	0.014	73.8	4918/4950 pairs	70/100 genes done
2402.77	174433/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
2407.86	174812/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
2412.92	175190/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
2418.02	175569/1000000	0.01	0.013	74.3	4918/4950 pairs	70/100 genes done
2423.10	175948/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
2428.16	176326/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
2433.24	176705/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
2438.35	177084/1000000	0.01	0.013	74.1	4918/4950 pairs	70/100 genes done
2443.40	177462/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
2448.61	177841/1000000	0.01	0.014	72.8	4918/4950 pairs	70/100 genes done
2453.78	178220/1000000	0.01	0.014	73.2	4918/4950 pairs	70/100 genes done
2458.94	178598/1000000	0.01	0.014	73.2	4918/4950 pairs	70/100 genes done
2464.14	178977/1000000	0.01	0.014	73.0	4918/4950 pairs	70/100 genes done
2469.20	179356/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
2474.25	179734/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
2479.32	180113/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
2484.41	180492/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
2489.82	180870/1000000	0.01	0.014	69.8	4918/4950 pairs	70/100 genes done
2494.99	181249/1000000	0.01	0.014	73.4	4918/4950 pairs	70/100 genes done
2500.06	181628/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
2505.22	182006/1000000	0.01	0.014	73.2	4918/4950 pairs	70/100 genes done
2510.35	182385/1000000	0.01	0.014	73.9	4918/4950 pairs	70/100 genes done
2515.41	182764/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
2520.42	183142/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
2525.45	183521/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
2530.46	183900/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
2535.46	184278/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
2540.50	184657/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
2545.52	185036/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
2550.55	185415/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
2555.56	185793/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
2560.58	186172/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
2565.77	186551/1000000	0.01	0.014	73.1	4918/4950 pairs	70/100 genes done
2571.21	186929/1000000	0.01	0.014	69.4	4918/4950 pairs	70/100 genes done
2576.25	187308/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
2581.30	187687/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
2586.32	188065/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
2591.36	188444/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
2596.51	188823/1000000	0.01	0.014	73.6	4918/4950 pairs	70/100 genes done
2601.82	189201/1000000	0.01	0.014	71.3	4918/4950 pairs	70/100 genes done
2607.34	189580/1000000	0.01	0.015	68.6	4918/4950 pairs	70/100 genes done
2612.48	189959/1000000	0.01	0.014	73.9	4918/4950 pairs	70/100 genes done
2617.61	190337/1000000	0.01	0.014	73.6	4918/4950 pairs	70/100 genes done
2622.83	190716/1000000	0.01	0.014	72.6	4918/4950 pairs	70/100 genes done
2628.06	191095/1000000	0.01	0.014	72.6	4918/4950 pairs	70/100 genes done
2633.15	191473/1000000	0.01	0.013	74.1	4918/4950 pairs	70/100 genes done
2638.19	191852/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
2643.20	192231/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
2648.21	192609/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
2653.23	192988/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
2658.29	193367/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
2663.32	193745/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
2668.27	194124/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
2673.31	194506/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
2678.41	194889/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
2683.40	195271/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
2688.61	195654/1000000	0.01	0.014	73.5	4918/4950 pairs	70/100 genes done
2693.74	196036/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
2698.93	196419/1000000	0.01	0.014	73.7	4918/4950 pairs	70/100 genes done
2703.99	196802/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
2709.18	197185/1000000	0.01	0.014	73.8	4918/4950 pairs	70/100 genes done
2714.34	197567/1000000	0.01	0.014	74.1	4918/4950 pairs	70/100 genes done
2719.57	197950/1000000	0.01	0.014	73.2	4918/4950 pairs	70/100 genes done
2724.59	198333/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
2729.61	198716/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
2734.95	199099/1000000	0.01	0.014	71.7	4918/4950 pairs	70/100 genes done
2740.02	199481/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
2745.12	199864/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
2750.40	200247/1000000	0.01	0.014	72.5	4918/4950 pairs	70/100 genes done
2755.51	200630/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
2760.71	201012/1000000	0.01	0.014	73.6	4918/4950 pairs	70/100 genes done
2765.75	201395/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
2770.81	201778/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
2775.88	202161/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
2781.00	202544/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
2786.08	202926/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
2791.21	203309/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
2796.35	203692/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
2801.59	204075/1000000	0.01	0.014	73.0	4918/4950 pairs	70/100 genes done
2806.71	204457/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
2811.82	204840/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
2816.93	205223/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
2822.05	205606/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
2827.14	205988/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
2832.28	206371/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
2837.47	206754/1000000	0.01	0.014	73.8	4918/4950 pairs	70/100 genes done
2842.65	207137/1000000	0.01	0.014	73.9	4918/4950 pairs	70/100 genes done
2847.78	207520/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
2853.12	207902/1000000	0.01	0.014	71.6	4918/4950 pairs	70/100 genes done
2858.27	208285/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
2863.40	208668/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
2868.54	209051/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
2873.99	209433/1000000	0.01	0.014	70.1	4918/4950 pairs	70/100 genes done
2879.28	209816/1000000	0.01	0.014	72.4	4918/4950 pairs	70/100 genes done
2884.41	210199/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
2889.54	210582/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
2894.56	210965/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
2899.54	211347/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
2904.65	211732/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
2909.83	212117/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
2914.97	212501/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
2920.18	212886/1000000	0.01	0.014	73.9	4918/4950 pairs	70/100 genes done
2925.48	213270/1000000	0.01	0.014	72.5	4918/4950 pairs	70/100 genes done
2930.69	213655/1000000	0.01	0.014	73.8	4918/4950 pairs	70/100 genes done
2935.94	214040/1000000	0.01	0.014	73.3	4918/4950 pairs	70/100 genes done
2941.17	214424/1000000	0.01	0.014	73.5	4918/4950 pairs	70/100 genes done
2946.49	214809/1000000	0.01	0.014	72.4	4918/4950 pairs	70/100 genes done
2951.73	215193/1000000	0.01	0.014	73.2	4918/4950 pairs	70/100 genes done
2957.02	215578/1000000	0.01	0.014	72.8	4918/4950 pairs	70/100 genes done
2962.21	215963/1000000	0.01	0.013	74.2	4918/4950 pairs	70/100 genes done
2967.38	216347/1000000	0.01	0.013	74.3	4918/4950 pairs	70/100 genes done
2972.50	216732/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
2977.71	217116/1000000	0.01	0.014	73.8	4918/4950 pairs	70/100 genes done
2982.93	217501/1000000	0.01	0.014	73.7	4918/4950 pairs	70/100 genes done
2988.17	217886/1000000	0.01	0.014	73.5	4918/4950 pairs	70/100 genes done
2993.34	218270/1000000	0.01	0.013	74.3	4918/4950 pairs	70/100 genes done
2998.72	218655/1000000	0.01	0.014	71.5	4918/4950 pairs	70/100 genes done
3003.73	219039/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
3008.80	219424/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
3013.87	219809/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
3018.90	220193/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
3024.02	220578/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
3029.12	220962/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
3034.24	221347/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
3039.36	221732/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
3044.63	222116/1000000	0.01	0.014	72.8	4918/4950 pairs	70/100 genes done
3049.81	222501/1000000	0.01	0.013	74.3	4918/4950 pairs	70/100 genes done
3054.95	222885/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
3060.10	223270/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
3065.38	223655/1000000	0.01	0.014	73.0	4918/4950 pairs	70/100 genes done
3070.49	224039/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
3075.64	224424/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
3080.74	224808/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
3085.97	225193/1000000	0.01	0.014	73.6	4918/4950 pairs	70/100 genes done
3091.14	225578/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
3096.35	225962/1000000	0.01	0.014	73.7	4918/4950 pairs	70/100 genes done
3101.75	226347/1000000	0.01	0.014	71.4	4918/4950 pairs	70/100 genes done
3106.92	226731/1000000	0.01	0.013	74.3	4918/4950 pairs	70/100 genes done
3112.09	227116/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
3117.36	227501/1000000	0.01	0.014	73.1	4918/4950 pairs	70/100 genes done
3122.56	227885/1000000	0.01	0.014	73.8	4918/4950 pairs	70/100 genes done
3127.71	228270/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
3132.82	228654/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
3137.93	229039/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
3143.04	229424/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
3148.15	229808/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
3153.27	230193/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
3158.39	230577/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
3163.56	230962/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
3168.75	231347/1000000	0.01	0.013	74.2	4918/4950 pairs	70/100 genes done
3173.94	231731/1000000	0.01	0.014	74.0	4918/4950 pairs	70/100 genes done
3179.15	232116/1000000	0.01	0.014	73.9	4918/4950 pairs	70/100 genes done
3184.30	232500/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
3189.52	232885/1000000	0.01	0.014	73.8	4918/4950 pairs	70/100 genes done
3194.73	233270/1000000	0.01	0.014	73.9	4918/4950 pairs	70/100 genes done
3200.03	233654/1000000	0.01	0.014	72.4	4918/4950 pairs	70/100 genes done
3205.24	234039/1000000	0.01	0.014	74.0	4918/4950 pairs	70/100 genes done
3210.42	234423/1000000	0.01	0.013	74.1	4918/4950 pairs	70/100 genes done
3215.55	234808/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
3220.84	235193/1000000	0.01	0.014	72.9	4918/4950 pairs	70/100 genes done
3226.05	235577/1000000	0.01	0.014	73.7	4918/4950 pairs	70/100 genes done
3231.24	235962/1000000	0.01	0.013	74.2	4918/4950 pairs	70/100 genes done
3236.52	236346/1000000	0.01	0.014	72.7	4918/4950 pairs	70/100 genes done
3241.81	236731/1000000	0.01	0.014	72.7	4918/4950 pairs	70/100 genes done
3246.88	237116/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
3251.93	237500/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
3257.14	237885/1000000	0.01	0.014	73.9	4918/4950 pairs	70/100 genes done
3262.29	238269/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
3267.42	238654/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
3272.60	239039/1000000	0.01	0.013	74.3	4918/4950 pairs	70/100 genes done
3277.75	239423/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
3282.98	239808/1000000	0.01	0.014	73.7	4918/4950 pairs	70/100 genes done
3288.12	240192/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
3293.27	240577/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
3298.37	240962/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
3303.37	241346/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
3308.44	241731/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
3313.56	242115/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
3318.93	242500/1000000	0.01	0.014	71.7	4918/4950 pairs	70/100 genes done
3323.98	242885/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
3328.99	243269/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
3334.05	243654/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
3339.07	244038/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
3344.17	244423/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
3349.25	244808/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
3354.47	245192/1000000	0.01	0.014	73.6	4918/4950 pairs	70/100 genes done
3359.57	245577/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
3364.84	245961/1000000	0.01	0.014	72.9	4918/4950 pairs	70/100 genes done
3369.96	246346/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
3375.06	246731/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
3380.12	247115/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
3385.18	247500/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
3390.25	247884/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
3395.35	248269/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
3400.42	248654/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
3405.75	249038/1000000	0.01	0.014	72.1	4918/4950 pairs	70/100 genes done
3410.95	249423/1000000	0.01	0.014	74.0	4918/4950 pairs	70/100 genes done
3416.03	249807/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
3421.23	250192/1000000	0.01	0.014	74.0	4918/4950 pairs	70/100 genes done
3426.36	250577/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
3431.41	250961/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
3436.50	251346/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
3441.80	251730/1000000	0.01	0.014	72.4	4918/4950 pairs	70/100 genes done
3446.98	252115/1000000	0.01	0.013	74.3	4918/4950 pairs	70/100 genes done
3452.11	252500/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
3457.25	252884/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
3462.40	253269/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
3467.63	253653/1000000	0.01	0.014	73.4	4918/4950 pairs	70/100 genes done
3472.95	254038/1000000	0.01	0.014	72.3	4918/4950 pairs	70/100 genes done
3478.21	254423/1000000	0.01	0.014	73.2	4918/4950 pairs	70/100 genes done
3483.46	254807/1000000	0.01	0.014	73.2	4918/4950 pairs	70/100 genes done
3488.73	255192/1000000	0.01	0.014	73.0	4918/4950 pairs	70/100 genes done
3494.07	255576/1000000	0.01	0.014	71.9	4918/4950 pairs	70/100 genes done
3499.35	255961/1000000	0.01	0.014	73.0	4918/4950 pairs	70/100 genes done
3504.50	256346/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
3509.64	256730/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
3514.77	257115/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
3519.91	257499/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
3525.31	257884/1000000	0.01	0.014	71.2	4918/4950 pairs	70/100 genes done
3530.56	258269/1000000	0.01	0.014	73.4	4918/4950 pairs	70/100 genes done
3535.69	258653/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
3540.86	259038/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
3546.00	259422/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
3551.23	259807/1000000	0.01	0.014	73.6	4918/4950 pairs	70/100 genes done
3556.40	260192/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
3561.72	260576/1000000	0.01	0.014	72.1	4918/4950 pairs	70/100 genes done
3566.98	260961/1000000	0.01	0.014	73.2	4918/4950 pairs	70/100 genes done
3572.17	261345/1000000	0.01	0.014	74.0	4918/4950 pairs	70/100 genes done
3577.42	261730/1000000	0.01	0.014	73.4	4918/4950 pairs	70/100 genes done
3582.54	262115/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
3587.68	262499/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
3592.76	262884/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
3597.90	263268/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
3603.02	263653/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
3608.07	264038/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
3613.11	264422/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
3618.15	264807/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
3623.18	265191/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
3628.23	265576/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
3633.33	265961/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
3638.37	266345/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
3643.56	266730/1000000	0.01	0.013	74.1	4918/4950 pairs	70/100 genes done
3648.64	267114/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
3653.71	267499/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
3658.79	267884/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
3663.88	268268/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
3669.17	268653/1000000	0.01	0.014	72.7	4918/4950 pairs	70/100 genes done
3674.29	269037/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
3679.42	269422/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
3684.49	269807/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
3689.55	270191/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
3694.61	270576/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
3699.81	270960/1000000	0.01	0.014	73.8	4918/4950 pairs	70/100 genes done
3704.94	271345/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
3710.23	271730/1000000	0.01	0.014	72.8	4918/4950 pairs	70/100 genes done
3715.64	272114/1000000	0.01	0.014	70.9	4918/4950 pairs	70/100 genes done
3720.85	272499/1000000	0.01	0.014	73.9	4918/4950 pairs	70/100 genes done
3726.04	272883/1000000	0.01	0.014	73.9	4918/4950 pairs	70/100 genes done
3731.25	273268/1000000	0.01	0.014	73.9	4918/4950 pairs	70/100 genes done
3736.46	273653/1000000	0.01	0.014	73.9	4918/4950 pairs	70/100 genes done
3741.79	274037/1000000	0.01	0.014	72.1	4918/4950 pairs	70/100 genes done
3746.96	274422/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
3752.27	274806/1000000	0.01	0.014	72.3	4918/4950 pairs	70/100 genes done
3757.50	275191/1000000	0.01	0.014	73.7	4918/4950 pairs	70/100 genes done
3762.72	275576/1000000	0.01	0.014	73.7	4918/4950 pairs	70/100 genes done
3767.91	275960/1000000	0.01	0.014	74.0	4918/4950 pairs	70/100 genes done
3773.09	276345/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
3778.28	276729/1000000	0.01	0.014	74.0	4918/4950 pairs	70/100 genes done
3783.53	277114/1000000	0.01	0.014	73.3	4918/4950 pairs	70/100 genes done
3788.71	277498/1000000	0.01	0.013	74.1	4918/4950 pairs	70/100 genes done
3793.89	277883/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
3799.42	278268/1000000	0.01	0.014	69.6	4918/4950 pairs	70/100 genes done
3804.63	278652/1000000	0.01	0.014	73.7	4918/4950 pairs	70/100 genes done
3809.84	279037/1000000	0.01	0.014	73.9	4918/4950 pairs	70/100 genes done
3815.03	279421/1000000	0.01	0.014	74.0	4918/4950 pairs	70/100 genes done
3820.30	279806/1000000	0.01	0.014	73.1	4918/4950 pairs	70/100 genes done
3825.52	280191/1000000	0.01	0.014	73.8	4918/4950 pairs	70/100 genes done
3830.78	280575/1000000	0.01	0.014	73.0	4918/4950 pairs	70/100 genes done
3835.95	280960/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
3841.10	281344/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
3846.44	281729/1000000	0.01	0.014	72.2	4918/4950 pairs	70/100 genes done
3851.58	282114/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
3856.69	282498/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
3861.81	282883/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
3867.03	283267/1000000	0.01	0.014	73.6	4918/4950 pairs	70/100 genes done
3872.22	283652/1000000	0.01	0.013	74.1	4918/4950 pairs	70/100 genes done
3877.35	284037/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
3882.73	284421/1000000	0.01	0.014	71.4	4918/4950 pairs	70/100 genes done
3887.85	284806/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
3892.94	285190/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
3898.05	285575/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
3903.56	285960/1000000	0.01	0.014	69.9	4918/4950 pairs	70/100 genes done
3908.69	286344/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
3913.99	286729/1000000	0.01	0.014	72.7	4918/4950 pairs	70/100 genes done
3919.22	287113/1000000	0.01	0.014	73.3	4918/4950 pairs	70/100 genes done
3924.33	287498/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
3929.43	287883/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
3934.53	288267/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
3939.68	288652/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
3944.84	289036/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
3949.97	289421/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
3955.58	289806/1000000	0.01	0.015	68.7	4918/4950 pairs	70/100 genes done
3960.80	290190/1000000	0.01	0.014	73.6	4918/4950 pairs	70/100 genes done
3966.27	290575/1000000	0.01	0.014	70.3	4918/4950 pairs	70/100 genes done
3971.43	290959/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
3976.58	291344/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
3981.74	291729/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
3987.07	292113/1000000	0.01	0.014	72.2	4918/4950 pairs	70/100 genes done
3992.23	292498/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
3997.41	292882/1000000	0.01	0.014	74.1	4918/4950 pairs	70/100 genes done
4002.57	293267/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
4007.82	293652/1000000	0.01	0.014	73.4	4918/4950 pairs	70/100 genes done
4012.96	294036/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
4018.17	294421/1000000	0.01	0.014	73.9	4918/4950 pairs	70/100 genes done
4023.33	294805/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
4028.48	295190/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
4033.66	295575/1000000	0.01	0.013	74.2	4918/4950 pairs	70/100 genes done
4038.85	295959/1000000	0.01	0.013	74.1	4918/4950 pairs	70/100 genes done
4044.05	296344/1000000	0.01	0.014	74.0	4918/4950 pairs	70/100 genes done
4049.26	296728/1000000	0.01	0.014	73.7	4918/4950 pairs	70/100 genes done
4054.31	297113/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
4059.57	297498/1000000	0.01	0.014	73.2	4918/4950 pairs	70/100 genes done
4064.78	297882/1000000	0.01	0.014	73.7	4918/4950 pairs	70/100 genes done
4069.98	298267/1000000	0.01	0.013	74.1	4918/4950 pairs	70/100 genes done
4075.15	298651/1000000	0.01	0.013	74.2	4918/4950 pairs	70/100 genes done
4080.35	299036/1000000	0.01	0.014	74.1	4918/4950 pairs	70/100 genes done
4085.54	299421/1000000	0.01	0.013	74.2	4918/4950 pairs	70/100 genes done
4090.65	299805/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
4095.74	300190/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
4100.97	300574/1000000	0.01	0.014	73.4	4918/4950 pairs	70/100 genes done
4106.04	300959/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
4111.11	301344/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
4116.20	301728/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
4121.25	302113/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
4126.35	302497/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
4131.52	302882/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
4136.76	303267/1000000	0.01	0.014	73.5	4918/4950 pairs	70/100 genes done
4141.82	303651/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
4146.88	304036/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
4151.92	304420/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
4156.97	304805/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
4162.13	305190/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
4167.19	305574/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
4172.31	305959/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
4177.37	306343/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
4182.45	306728/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
4187.52	307113/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
4192.62	307497/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
4197.72	307882/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
4202.85	308266/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
4207.98	308651/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
4213.31	309036/1000000	0.01	0.014	72.3	4918/4950 pairs	70/100 genes done
4218.48	309420/1000000	0.01	0.013	74.3	4918/4950 pairs	70/100 genes done
4223.63	309805/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
4228.78	310189/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
4233.93	310574/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
4239.12	310959/1000000	0.01	0.013	74.2	4918/4950 pairs	70/100 genes done
4244.30	311343/1000000	0.01	0.013	74.1	4918/4950 pairs	70/100 genes done
4249.89	311728/1000000	0.01	0.014	69.0	4918/4950 pairs	70/100 genes done
4255.03	312112/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
4260.17	312497/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
4265.28	312882/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
4270.40	313266/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
4275.64	313651/1000000	0.01	0.014	73.5	4918/4950 pairs	70/100 genes done
4280.81	314035/1000000	0.01	0.013	74.3	4918/4950 pairs	70/100 genes done
4285.95	314420/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
4291.10	314805/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
4296.23	315189/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
4301.39	315574/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
4306.53	315958/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
4311.72	316343/1000000	0.01	0.013	74.2	4918/4950 pairs	70/100 genes done
4316.91	316728/1000000	0.01	0.013	74.2	4918/4950 pairs	70/100 genes done
4322.27	317112/1000000	0.01	0.014	71.6	4918/4950 pairs	70/100 genes done
4327.86	317497/1000000	0.01	0.015	68.9	4918/4950 pairs	70/100 genes done
4333.29	317881/1000000	0.01	0.014	70.8	4918/4950 pairs	70/100 genes done
4338.38	318266/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
4343.49	318651/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
4348.57	319035/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
4353.67	319420/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
4358.83	319804/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
4363.98	320189/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
4369.46	320574/1000000	0.01	0.014	70.2	4918/4950 pairs	70/100 genes done
4374.57	320958/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
4379.86	321343/1000000	0.01	0.014	72.7	4918/4950 pairs	70/100 genes done
4385.23	321727/1000000	0.01	0.014	71.6	4918/4950 pairs	70/100 genes done
4390.40	322112/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
4395.57	322497/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
4400.66	322881/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
4405.70	323266/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
4410.74	323650/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
4415.85	324035/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
4420.98	324420/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
4426.08	324804/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
4431.19	325189/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
4436.35	325573/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
4441.51	325958/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
4447.30	326343/1000000	0.01	0.015	66.5	4918/4950 pairs	70/100 genes done
4452.43	326727/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
4457.54	327112/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
4462.62	327496/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
4467.69	327881/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
4472.77	328266/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
4477.91	328650/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
4483.28	329035/1000000	0.01	0.014	71.7	4918/4950 pairs	70/100 genes done
4488.65	329419/1000000	0.01	0.014	71.5	4918/4950 pairs	70/100 genes done
4493.71	329804/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
4498.74	330189/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
4503.77	330573/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
4508.83	330958/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
4513.80	331342/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
4518.83	331730/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
4523.72	332117/1000000	0.01	0.013	79.2	4918/4950 pairs	70/100 genes done
4528.72	332514/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
4533.70	332910/1000000	0.01	0.013	79.5	4918/4950 pairs	70/100 genes done
4538.70	333308/1000000	0.01	0.013	79.5	4918/4950 pairs	70/100 genes done
4543.71	333706/1000000	0.01	0.013	79.5	4918/4950 pairs	70/100 genes done
4548.74	334105/1000000	0.01	0.013	79.5	4918/4950 pairs	70/100 genes done
4553.75	334503/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
4558.88	334901/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
4563.96	335299/1000000	0.01	0.013	78.3	4918/4950 pairs	70/100 genes done
4569.12	335697/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
4574.21	336095/1000000	0.01	0.013	78.1	4918/4950 pairs	70/100 genes done
4579.24	336494/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
4584.25	336892/1000000	0.01	0.013	79.4	4918/4950 pairs	70/100 genes done
4589.31	337290/1000000	0.01	0.013	78.7	4918/4950 pairs	70/100 genes done
4594.36	337688/1000000	0.01	0.013	78.7	4918/4950 pairs	70/100 genes done
4599.43	338086/1000000	0.01	0.013	78.5	4918/4950 pairs	70/100 genes done
4604.65	338485/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
4609.78	338883/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
4614.82	339281/1000000	0.01	0.013	79.0	4918/4950 pairs	70/100 genes done
4619.88	339679/1000000	0.01	0.013	78.6	4918/4950 pairs	70/100 genes done
4624.95	340077/1000000	0.01	0.013	78.6	4918/4950 pairs	70/100 genes done
4630.01	340476/1000000	0.01	0.013	78.8	4918/4950 pairs	70/100 genes done
4635.08	340874/1000000	0.01	0.013	78.6	4918/4950 pairs	70/100 genes done
4640.21	341272/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
4645.28	341670/1000000	0.01	0.013	78.5	4918/4950 pairs	70/100 genes done
4650.34	342068/1000000	0.01	0.013	78.7	4918/4950 pairs	70/100 genes done
4655.43	342466/1000000	0.01	0.013	78.1	4918/4950 pairs	70/100 genes done
4660.51	342865/1000000	0.01	0.013	78.5	4918/4950 pairs	70/100 genes done
4665.57	343263/1000000	0.01	0.013	78.8	4918/4950 pairs	70/100 genes done
4670.65	343661/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
4675.82	344059/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
4680.89	344457/1000000	0.01	0.013	78.5	4918/4950 pairs	70/100 genes done
4686.08	344856/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
4691.20	345254/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
4696.26	345652/1000000	0.01	0.013	78.7	4918/4950 pairs	70/100 genes done
4701.28	346050/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
4706.38	346448/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
4711.40	346846/1000000	0.01	0.013	79.4	4918/4950 pairs	70/100 genes done
4716.57	347245/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
4721.59	347643/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
4726.58	348041/1000000	0.01	0.013	79.8	4918/4950 pairs	70/100 genes done
4731.75	348440/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
4736.72	348839/1000000	0.01	0.012	80.3	4918/4950 pairs	70/100 genes done
4741.75	349241/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
4746.78	349642/1000000	0.01	0.013	79.7	4918/4950 pairs	70/100 genes done
4751.82	350044/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
4757.03	350446/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
4762.10	350847/1000000	0.01	0.013	79.2	4918/4950 pairs	70/100 genes done
4767.22	351249/1000000	0.01	0.013	78.4	4918/4950 pairs	70/100 genes done
4772.28	351650/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
4777.37	352052/1000000	0.01	0.013	79.1	4918/4950 pairs	70/100 genes done
4782.41	352453/1000000	0.01	0.013	79.5	4918/4950 pairs	70/100 genes done
4787.49	352855/1000000	0.01	0.013	79.0	4918/4950 pairs	70/100 genes done
4792.61	353256/1000000	0.01	0.013	78.4	4918/4950 pairs	70/100 genes done
4797.79	353658/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
4803.15	354059/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
4808.36	354461/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
4813.73	354863/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
4818.86	355264/1000000	0.01	0.013	78.1	4918/4950 pairs	70/100 genes done
4824.01	355666/1000000	0.01	0.013	78.1	4918/4950 pairs	70/100 genes done
4829.16	356067/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
4834.32	356469/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
4839.38	356870/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
4844.40	357272/1000000	0.01	0.012	80.1	4918/4950 pairs	70/100 genes done
4849.47	357673/1000000	0.01	0.013	79.1	4918/4950 pairs	70/100 genes done
4854.50	358075/1000000	0.01	0.013	80.0	4918/4950 pairs	70/100 genes done
4859.52	358477/1000000	0.01	0.012	80.1	4918/4950 pairs	70/100 genes done
4864.52	358878/1000000	0.01	0.012	80.1	4918/4950 pairs	70/100 genes done
4869.55	359280/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
4874.60	359681/1000000	0.01	0.013	79.4	4918/4950 pairs	70/100 genes done
4879.65	360083/1000000	0.01	0.013	79.6	4918/4950 pairs	70/100 genes done
4884.65	360484/1000000	0.01	0.012	80.1	4918/4950 pairs	70/100 genes done
4889.68	360886/1000000	0.01	0.013	80.0	4918/4950 pairs	70/100 genes done
4894.68	361287/1000000	0.01	0.012	80.2	4918/4950 pairs	70/100 genes done
4899.69	361689/1000000	0.01	0.012	80.2	4918/4950 pairs	70/100 genes done
4904.72	362091/1000000	0.01	0.013	80.0	4918/4950 pairs	70/100 genes done
4909.76	362492/1000000	0.01	0.013	79.6	4918/4950 pairs	70/100 genes done
4914.83	362894/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
4920.06	363296/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
4925.22	363697/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
4930.28	364099/1000000	0.01	0.013	79.5	4918/4950 pairs	70/100 genes done
4935.47	364501/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
4940.47	364902/1000000	0.01	0.012	80.2	4918/4950 pairs	70/100 genes done
4945.57	365304/1000000	0.01	0.013	78.8	4918/4950 pairs	70/100 genes done
4950.68	365706/1000000	0.01	0.013	78.7	4918/4950 pairs	70/100 genes done
4955.84	366108/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
4960.86	366509/1000000	0.01	0.013	79.8	4918/4950 pairs	70/100 genes done
4965.89	366911/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
4970.92	367313/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
4975.94	367714/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
4980.97	368116/1000000	0.01	0.013	80.0	4918/4950 pairs	70/100 genes done
4985.99	368518/1000000	0.01	0.012	80.1	4918/4950 pairs	70/100 genes done
4991.04	368919/1000000	0.01	0.013	79.4	4918/4950 pairs	70/100 genes done
4996.14	369321/1000000	0.01	0.013	78.8	4918/4950 pairs	70/100 genes done
5001.18	369723/1000000	0.01	0.013	79.8	4918/4950 pairs	70/100 genes done
5006.15	370124/1000000	0.01	0.012	80.7	4918/4950 pairs	70/100 genes done
5011.16	370528/1000000	0.01	0.012	80.6	4918/4950 pairs	70/100 genes done
5016.21	370933/1000000	0.01	0.012	80.3	4918/4950 pairs	70/100 genes done
5021.36	371337/1000000	0.01	0.013	78.5	4918/4950 pairs	70/100 genes done
5026.47	371741/1000000	0.01	0.013	79.0	4918/4950 pairs	70/100 genes done
5031.57	372145/1000000	0.01	0.013	79.2	4918/4950 pairs	70/100 genes done
5036.64	372549/1000000	0.01	0.013	79.7	4918/4950 pairs	70/100 genes done
5041.73	372953/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
5047.16	373357/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
5052.45	373761/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
5057.68	374165/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
5062.76	374569/1000000	0.01	0.013	79.6	4918/4950 pairs	70/100 genes done
5067.85	374974/1000000	0.01	0.013	79.6	4918/4950 pairs	70/100 genes done
5072.95	375378/1000000	0.01	0.013	79.2	4918/4950 pairs	70/100 genes done
5078.05	375782/1000000	0.01	0.013	79.2	4918/4950 pairs	70/100 genes done
5083.09	376186/1000000	0.01	0.012	80.1	4918/4950 pairs	70/100 genes done
5088.25	376590/1000000	0.01	0.013	78.3	4918/4950 pairs	70/100 genes done
5093.31	376994/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
5098.36	377398/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
5103.41	377802/1000000	0.01	0.012	80.1	4918/4950 pairs	70/100 genes done
5108.46	378206/1000000	0.01	0.013	80.0	4918/4950 pairs	70/100 genes done
5113.59	378611/1000000	0.01	0.013	78.9	4918/4950 pairs	70/100 genes done
5118.68	379015/1000000	0.01	0.013	79.4	4918/4950 pairs	70/100 genes done
5123.81	379419/1000000	0.01	0.013	78.8	4918/4950 pairs	70/100 genes done
5128.94	379823/1000000	0.01	0.013	78.6	4918/4950 pairs	70/100 genes done
5134.21	380227/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
5139.40	380631/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
5144.48	381035/1000000	0.01	0.013	79.6	4918/4950 pairs	70/100 genes done
5149.56	381439/1000000	0.01	0.013	79.5	4918/4950 pairs	70/100 genes done
5154.65	381843/1000000	0.01	0.013	79.5	4918/4950 pairs	70/100 genes done
5159.73	382248/1000000	0.01	0.013	79.7	4918/4950 pairs	70/100 genes done
5164.81	382652/1000000	0.01	0.013	79.5	4918/4950 pairs	70/100 genes done
5170.08	383056/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
5175.20	383460/1000000	0.01	0.013	79.0	4918/4950 pairs	70/100 genes done
5180.46	383864/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
5185.55	384268/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
5190.83	384672/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
5195.93	385076/1000000	0.01	0.013	79.2	4918/4950 pairs	70/100 genes done
5201.06	385480/1000000	0.01	0.013	78.8	4918/4950 pairs	70/100 genes done
5206.19	385885/1000000	0.01	0.013	78.9	4918/4950 pairs	70/100 genes done
5211.29	386289/1000000	0.01	0.013	79.2	4918/4950 pairs	70/100 genes done
5216.35	386693/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
5221.40	387097/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
5226.46	387501/1000000	0.01	0.013	79.8	4918/4950 pairs	70/100 genes done
5231.51	387905/1000000	0.01	0.013	80.0	4918/4950 pairs	70/100 genes done
5236.61	388309/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
5241.85	388713/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
5247.04	389117/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
5252.17	389521/1000000	0.01	0.013	78.8	4918/4950 pairs	70/100 genes done
5257.29	389926/1000000	0.01	0.013	79.1	4918/4950 pairs	70/100 genes done
5262.41	390330/1000000	0.01	0.013	78.9	4918/4950 pairs	70/100 genes done
5267.52	390734/1000000	0.01	0.013	79.2	4918/4950 pairs	70/100 genes done
5272.62	391138/1000000	0.01	0.013	79.2	4918/4950 pairs	70/100 genes done
5277.72	391542/1000000	0.01	0.013	79.1	4918/4950 pairs	70/100 genes done
5282.90	391946/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
5288.02	392350/1000000	0.01	0.013	78.9	4918/4950 pairs	70/100 genes done
5293.17	392754/1000000	0.01	0.013	78.4	4918/4950 pairs	70/100 genes done
5298.27	393158/1000000	0.01	0.013	79.2	4918/4950 pairs	70/100 genes done
5303.37	393563/1000000	0.01	0.013	79.4	4918/4950 pairs	70/100 genes done
5308.50	393967/1000000	0.01	0.013	78.8	4918/4950 pairs	70/100 genes done
5313.55	394371/1000000	0.01	0.013	80.0	4918/4950 pairs	70/100 genes done
5318.59	394775/1000000	0.01	0.012	80.1	4918/4950 pairs	70/100 genes done
5323.64	395179/1000000	0.01	0.012	80.1	4918/4950 pairs	70/100 genes done
5328.68	395583/1000000	0.01	0.012	80.1	4918/4950 pairs	70/100 genes done
5333.73	395987/1000000	0.01	0.012	80.0	4918/4950 pairs	70/100 genes done
5338.79	396391/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
5343.87	396795/1000000	0.01	0.013	79.6	4918/4950 pairs	70/100 genes done
5348.97	397200/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
5354.06	397604/1000000	0.01	0.013	79.4	4918/4950 pairs	70/100 genes done
5359.26	398008/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
5364.40	398412/1000000	0.01	0.013	78.7	4918/4950 pairs	70/100 genes done
5369.70	398816/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
5374.81	399220/1000000	0.01	0.013	79.1	4918/4950 pairs	70/100 genes done
5379.92	399624/1000000	0.01	0.013	79.1	4918/4950 pairs	70/100 genes done
5385.04	400028/1000000	0.01	0.013	78.8	4918/4950 pairs	70/100 genes done
5390.15	400432/1000000	0.01	0.013	79.1	4918/4950 pairs	70/100 genes done
5395.26	400837/1000000	0.01	0.013	79.2	4918/4950 pairs	70/100 genes done
5400.37	401241/1000000	0.01	0.013	79.1	4918/4950 pairs	70/100 genes done
5405.50	401645/1000000	0.01	0.013	78.7	4918/4950 pairs	70/100 genes done
5410.66	402049/1000000	0.01	0.013	78.4	4918/4950 pairs	70/100 genes done
5415.85	402453/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
5421.01	402857/1000000	0.01	0.013	78.3	4918/4950 pairs	70/100 genes done
5426.19	403261/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
5431.41	403665/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
5436.47	404069/1000000	0.01	0.013	79.8	4918/4950 pairs	70/100 genes done
5441.61	404473/1000000	0.01	0.013	78.7	4918/4950 pairs	70/100 genes done
5446.71	404878/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
5451.95	405282/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
5457.17	405686/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
5462.28	406090/1000000	0.01	0.013	79.0	4918/4950 pairs	70/100 genes done
5467.44	406494/1000000	0.01	0.013	78.3	4918/4950 pairs	70/100 genes done
5472.58	406898/1000000	0.01	0.013	78.6	4918/4950 pairs	70/100 genes done
5477.90	407302/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
5483.21	407706/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
5488.27	408110/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
5493.33	408515/1000000	0.01	0.012	80.1	4918/4950 pairs	70/100 genes done
5498.39	408919/1000000	0.01	0.013	79.8	4918/4950 pairs	70/100 genes done
5503.45	409323/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
5508.50	409727/1000000	0.01	0.013	80.0	4918/4950 pairs	70/100 genes done
5513.54	410131/1000000	0.01	0.012	80.2	4918/4950 pairs	70/100 genes done
5518.60	410535/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
5523.67	410939/1000000	0.01	0.013	79.7	4918/4950 pairs	70/100 genes done
5528.81	411343/1000000	0.01	0.013	78.6	4918/4950 pairs	70/100 genes done
5533.92	411747/1000000	0.01	0.013	79.1	4918/4950 pairs	70/100 genes done
5539.07	412152/1000000	0.01	0.013	78.7	4918/4950 pairs	70/100 genes done
5544.24	412556/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
5549.44	412960/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
5554.52	413364/1000000	0.01	0.013	79.6	4918/4950 pairs	70/100 genes done
5559.60	413768/1000000	0.01	0.013	79.5	4918/4950 pairs	70/100 genes done
5564.84	414172/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
5570.08	414576/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
5575.18	414980/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
5580.31	415384/1000000	0.01	0.013	78.7	4918/4950 pairs	70/100 genes done
5585.47	415789/1000000	0.01	0.013	78.5	4918/4950 pairs	70/100 genes done
5590.64	416193/1000000	0.01	0.013	78.3	4918/4950 pairs	70/100 genes done
5595.86	416597/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
5601.23	417001/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
5606.39	417405/1000000	0.01	0.013	78.4	4918/4950 pairs	70/100 genes done
5611.54	417809/1000000	0.01	0.013	78.4	4918/4950 pairs	70/100 genes done
5616.70	418213/1000000	0.01	0.013	78.4	4918/4950 pairs	70/100 genes done
5621.84	418617/1000000	0.01	0.013	78.5	4918/4950 pairs	70/100 genes done
5627.00	419021/1000000	0.01	0.013	78.4	4918/4950 pairs	70/100 genes done
5632.17	419426/1000000	0.01	0.013	78.4	4918/4950 pairs	70/100 genes done
5637.33	419830/1000000	0.01	0.013	78.4	4918/4950 pairs	70/100 genes done
5642.48	420234/1000000	0.01	0.013	78.4	4918/4950 pairs	70/100 genes done
5647.64	420638/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
5652.83	421042/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
5657.96	421446/1000000	0.01	0.013	78.7	4918/4950 pairs	70/100 genes done
5663.44	421850/1000000	0.01	0.014	73.8	4918/4950 pairs	70/100 genes done
5668.53	422254/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
5673.65	422658/1000000	0.01	0.013	78.9	4918/4950 pairs	70/100 genes done
5678.71	423062/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
5683.82	423467/1000000	0.01	0.013	79.2	4918/4950 pairs	70/100 genes done
5689.00	423871/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
5694.16	424275/1000000	0.01	0.013	78.3	4918/4950 pairs	70/100 genes done
5699.29	424679/1000000	0.01	0.013	78.8	4918/4950 pairs	70/100 genes done
5704.42	425083/1000000	0.01	0.013	78.7	4918/4950 pairs	70/100 genes done
5709.58	425487/1000000	0.01	0.013	78.3	4918/4950 pairs	70/100 genes done
5714.71	425891/1000000	0.01	0.013	78.7	4918/4950 pairs	70/100 genes done
5719.84	426295/1000000	0.01	0.013	78.8	4918/4950 pairs	70/100 genes done
5725.02	426699/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
5730.16	427104/1000000	0.01	0.013	78.8	4918/4950 pairs	70/100 genes done
5735.21	427508/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
5740.27	427912/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
5745.32	428316/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
5750.40	428720/1000000	0.01	0.013	79.7	4918/4950 pairs	70/100 genes done
5755.46	429124/1000000	0.01	0.013	79.7	4918/4950 pairs	70/100 genes done
5760.53	429528/1000000	0.01	0.013	79.6	4918/4950 pairs	70/100 genes done
5765.61	429932/1000000	0.01	0.013	79.6	4918/4950 pairs	70/100 genes done
5770.82	430336/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
5776.05	430741/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
5781.30	431145/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
5786.51	431549/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
5791.55	431953/1000000	0.01	0.012	80.1	4918/4950 pairs	70/100 genes done
5796.77	432357/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
5801.93	432761/1000000	0.01	0.013	78.4	4918/4950 pairs	70/100 genes done
5806.98	433165/1000000	0.01	0.013	80.0	4918/4950 pairs	70/100 genes done
5812.04	433569/1000000	0.01	0.013	79.8	4918/4950 pairs	70/100 genes done
5817.12	433973/1000000	0.01	0.013	79.5	4918/4950 pairs	70/100 genes done
5822.25	434378/1000000	0.01	0.013	79.0	4918/4950 pairs	70/100 genes done
5827.36	434782/1000000	0.01	0.013	78.9	4918/4950 pairs	70/100 genes done
5832.44	435186/1000000	0.01	0.013	79.5	4918/4950 pairs	70/100 genes done
5837.52	435590/1000000	0.01	0.013	79.5	4918/4950 pairs	70/100 genes done
5842.71	435994/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
5847.77	436398/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
5852.81	436802/1000000	0.01	0.012	80.1	4918/4950 pairs	70/100 genes done
5857.85	437206/1000000	0.01	0.012	80.2	4918/4950 pairs	70/100 genes done
5862.90	437610/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
5867.96	438014/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
5873.01	438419/1000000	0.01	0.012	80.1	4918/4950 pairs	70/100 genes done
5878.04	438823/1000000	0.01	0.012	80.3	4918/4950 pairs	70/100 genes done
5883.08	439227/1000000	0.01	0.012	80.2	4918/4950 pairs	70/100 genes done
5888.16	439631/1000000	0.01	0.013	79.6	4918/4950 pairs	70/100 genes done
5893.44	440035/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
5898.79	440439/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
5903.89	440843/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
5909.26	441247/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
5914.38	441651/1000000	0.01	0.013	78.9	4918/4950 pairs	70/100 genes done
5919.74	442056/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
5924.84	442460/1000000	0.01	0.013	79.1	4918/4950 pairs	70/100 genes done
5929.92	442864/1000000	0.01	0.013	79.6	4918/4950 pairs	70/100 genes done
5935.29	443268/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
5940.39	443672/1000000	0.01	0.013	79.2	4918/4950 pairs	70/100 genes done
5945.59	444076/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
5950.67	444480/1000000	0.01	0.013	79.6	4918/4950 pairs	70/100 genes done
5955.73	444884/1000000	0.01	0.013	79.8	4918/4950 pairs	70/100 genes done
5960.85	445288/1000000	0.01	0.013	78.9	4918/4950 pairs	70/100 genes done
5966.13	445693/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
5971.21	446097/1000000	0.01	0.013	79.4	4918/4950 pairs	70/100 genes done
5976.25	446501/1000000	0.01	0.012	80.2	4918/4950 pairs	70/100 genes done
5981.29	446905/1000000	0.01	0.012	80.2	4918/4950 pairs	70/100 genes done
5986.39	447309/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
5991.42	447713/1000000	0.01	0.012	80.2	4918/4950 pairs	70/100 genes done
5996.47	448117/1000000	0.01	0.012	80.1	4918/4950 pairs	70/100 genes done
6001.59	448521/1000000	0.01	0.013	78.8	4918/4950 pairs	70/100 genes done
6006.65	448925/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
6011.74	449330/1000000	0.01	0.013	79.7	4918/4950 pairs	70/100 genes done
6017.06	449734/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
6022.13	450138/1000000	0.01	0.013	79.6	4918/4950 pairs	70/100 genes done
6027.25	450542/1000000	0.01	0.013	79.0	4918/4950 pairs	70/100 genes done
6032.37	450946/1000000	0.01	0.013	78.9	4918/4950 pairs	70/100 genes done
6037.43	451350/1000000	0.01	0.013	79.8	4918/4950 pairs	70/100 genes done
6042.52	451754/1000000	0.01	0.013	79.5	4918/4950 pairs	70/100 genes done
6047.58	452158/1000000	0.01	0.013	79.8	4918/4950 pairs	70/100 genes done
6052.73	452562/1000000	0.01	0.013	78.5	4918/4950 pairs	70/100 genes done
6058.10	452966/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
6063.19	453371/1000000	0.01	0.013	79.6	4918/4950 pairs	70/100 genes done
6068.24	453775/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
6073.29	454179/1000000	0.01	0.013	80.0	4918/4950 pairs	70/100 genes done
6078.38	454583/1000000	0.01	0.013	79.4	4918/4950 pairs	70/100 genes done
6083.55	454987/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
6088.63	455391/1000000	0.01	0.013	79.5	4918/4950 pairs	70/100 genes done
6093.69	455795/1000000	0.01	0.013	80.0	4918/4950 pairs	70/100 genes done
6098.74	456199/1000000	0.01	0.013	79.9	4918/4950 pairs	70/100 genes done
6103.83	456603/1000000	0.01	0.013	79.4	4918/4950 pairs	70/100 genes done
6108.95	457008/1000000	0.01	0.013	79.1	4918/4950 pairs	70/100 genes done
6114.04	457412/1000000	0.01	0.013	79.4	4918/4950 pairs	70/100 genes done
6119.10	457816/1000000	0.01	0.013	79.8	4918/4950 pairs	70/100 genes done
6124.17	458220/1000000	0.01	0.013	79.8	4918/4950 pairs	70/100 genes done
6129.30	458624/1000000	0.01	0.013	78.8	4918/4950 pairs	70/100 genes done
6134.47	459028/1000000	0.01	0.013	78.1	4918/4950 pairs	70/100 genes done
6139.67	459432/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
6144.82	459836/1000000	0.01	0.013	78.4	4918/4950 pairs	70/100 genes done
6149.99	460240/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
6155.19	460645/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
6160.36	461049/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
6165.63	461453/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
6170.78	461857/1000000	0.01	0.013	78.4	4918/4950 pairs	70/100 genes done
6175.96	462261/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
6181.08	462665/1000000	0.01	0.013	78.9	4918/4950 pairs	70/100 genes done
6186.18	463069/1000000	0.01	0.013	79.2	4918/4950 pairs	70/100 genes done
6191.29	463473/1000000	0.01	0.013	79.0	4918/4950 pairs	70/100 genes done
6196.41	463877/1000000	0.01	0.013	78.9	4918/4950 pairs	70/100 genes done
6201.56	464282/1000000	0.01	0.013	78.6	4918/4950 pairs	70/100 genes done
6206.88	464686/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
6212.04	465090/1000000	0.01	0.013	78.4	4918/4950 pairs	70/100 genes done
6217.18	465494/1000000	0.01	0.013	78.7	4918/4950 pairs	70/100 genes done
6222.29	465898/1000000	0.01	0.013	79.1	4918/4950 pairs	70/100 genes done
6227.40	466302/1000000	0.01	0.013	78.9	4918/4950 pairs	70/100 genes done
6232.50	466706/1000000	0.01	0.013	79.2	4918/4950 pairs	70/100 genes done
6237.61	467110/1000000	0.01	0.013	79.1	4918/4950 pairs	70/100 genes done
6242.73	467514/1000000	0.01	0.013	79.0	4918/4950 pairs	70/100 genes done
6247.85	467918/1000000	0.01	0.013	78.9	4918/4950 pairs	70/100 genes done
6252.99	468323/1000000	0.01	0.013	78.8	4918/4950 pairs	70/100 genes done
6258.31	468727/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
6263.61	469131/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
6268.72	469535/1000000	0.01	0.013	79.0	4918/4950 pairs	70/100 genes done
6273.86	469939/1000000	0.01	0.013	78.7	4918/4950 pairs	70/100 genes done
6278.93	470343/1000000	0.01	0.013	79.6	4918/4950 pairs	70/100 genes done
6284.00	470747/1000000	0.01	0.013	79.7	4918/4950 pairs	70/100 genes done
6289.09	471151/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
6294.36	471555/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
6299.58	471960/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
6304.68	472364/1000000	0.01	0.013	79.2	4918/4950 pairs	70/100 genes done
6309.76	472768/1000000	0.01	0.013	79.6	4918/4950 pairs	70/100 genes done
6314.84	473172/1000000	0.01	0.013	79.4	4918/4950 pairs	70/100 genes done
6319.95	473576/1000000	0.01	0.013	79.1	4918/4950 pairs	70/100 genes done
6325.05	473980/1000000	0.01	0.013	79.3	4918/4950 pairs	70/100 genes done
6330.18	474384/1000000	0.01	0.013	78.8	4918/4950 pairs	70/100 genes done
6335.34	474788/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
6340.52	475192/1000000	0.01	0.013	78.1	4918/4950 pairs	70/100 genes done
6345.70	475597/1000000	0.01	0.013	78.1	4918/4950 pairs	70/100 genes done
6350.86	476001/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
6356.03	476405/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
6361.28	476809/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
6366.47	477213/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
6371.83	477617/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
6377.39	478021/1000000	0.01	0.014	72.6	4918/4950 pairs	70/100 genes done
6382.70	478425/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
6388.00	478829/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
6393.36	479234/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
6398.67	479638/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
6404.05	480042/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
6409.38	480446/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
6414.69	480850/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
6420.13	481254/1000000	0.01	0.013	74.3	4918/4950 pairs	70/100 genes done
6425.41	481658/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
6430.63	482062/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
6436.06	482466/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
6441.28	482870/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
6446.67	483275/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
6451.90	483679/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
6457.11	484083/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
6462.31	484487/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
6467.54	484891/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
6472.76	485295/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
6477.96	485699/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
6483.18	486103/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
6488.48	486507/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
6493.93	486912/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
6499.15	487316/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
6504.50	487720/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
6509.72	488124/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
6514.93	488528/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
6520.20	488932/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
6525.61	489336/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
6530.81	489740/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
6536.06	490144/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
6541.44	490549/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
6546.76	490953/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
6552.02	491357/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
6557.26	491761/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
6562.57	492165/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
6567.91	492569/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
6573.18	492973/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
6578.39	493377/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
6583.58	493781/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
6588.80	494186/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
6594.02	494590/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
6599.23	494994/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
6604.45	495398/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
6609.73	495802/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
6614.95	496206/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
6620.19	496610/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
6625.50	497014/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
6630.99	497418/1000000	0.01	0.014	73.7	4918/4950 pairs	70/100 genes done
6636.25	497823/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
6641.74	498227/1000000	0.01	0.014	73.5	4918/4950 pairs	70/100 genes done
6647.48	498631/1000000	0.01	0.014	70.4	4918/4950 pairs	70/100 genes done
6652.98	499035/1000000	0.01	0.014	73.4	4918/4950 pairs	70/100 genes done
6658.19	499439/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
6663.54	499843/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
6668.76	500247/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
6674.02	500651/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
6679.23	501055/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
6684.44	501459/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
6689.71	501864/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
6695.08	502268/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
6700.34	502672/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
6705.60	503076/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
6710.85	503480/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
6716.07	503884/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
6721.40	504288/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
6726.61	504692/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
6731.92	505096/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
6737.14	505501/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
6742.33	505905/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
6747.61	506309/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
6752.86	506713/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
6758.11	507117/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
6763.37	507521/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
6768.74	507925/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
6774.10	508329/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
6779.49	508733/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
6785.07	509138/1000000	0.01	0.014	72.5	4918/4950 pairs	70/100 genes done
6790.27	509542/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
6795.45	509946/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
6800.66	510350/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
6805.84	510754/1000000	0.01	0.013	78.1	4918/4950 pairs	70/100 genes done
6811.03	511158/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
6816.32	511562/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
6821.49	511966/1000000	0.01	0.013	78.1	4918/4950 pairs	70/100 genes done
6826.72	512370/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
6831.91	512775/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
6837.12	513179/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
6842.48	513583/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
6847.98	513987/1000000	0.01	0.014	73.4	4918/4950 pairs	70/100 genes done
6853.38	514391/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
6858.57	514795/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
6863.78	515199/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
6869.07	515603/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
6874.37	516007/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
6879.73	516411/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
6885.07	516816/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
6890.47	517220/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
6896.00	517624/1000000	0.01	0.014	73.1	4918/4950 pairs	70/100 genes done
6901.37	518028/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
6906.85	518432/1000000	0.01	0.014	73.8	4918/4950 pairs	70/100 genes done
6912.21	518836/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
6917.57	519240/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
6922.92	519644/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
6928.25	520048/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
6933.67	520453/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
6939.05	520857/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
6944.42	521261/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
6949.81	521665/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
6955.18	522069/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
6960.60	522473/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
6965.99	522877/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
6971.41	523281/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
6976.76	523685/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
6982.11	524090/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
6987.45	524494/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
6992.86	524898/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
6998.16	525302/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
7003.42	525706/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
7008.69	526110/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
7014.12	526514/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
7019.52	526918/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
7024.86	527322/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
7030.20	527727/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
7035.47	528131/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
7040.74	528535/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
7045.99	528939/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
7051.26	529343/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
7056.64	529747/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
7061.92	530151/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
7067.22	530555/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
7072.46	530959/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
7077.76	531363/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
7083.00	531768/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
7088.34	532172/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
7093.66	532576/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
7098.93	532980/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
7104.27	533384/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
7109.65	533788/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
7115.00	534192/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
7120.27	534596/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
7125.51	535000/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
7130.74	535405/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
7136.02	535809/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
7141.41	536213/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
7146.79	536617/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
7152.28	537021/1000000	0.01	0.014	73.6	4918/4950 pairs	70/100 genes done
7157.47	537425/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
7162.69	537829/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
7168.02	538233/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
7173.39	538637/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
7178.77	539042/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
7184.13	539446/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
7189.41	539850/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
7194.71	540254/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
7200.01	540658/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
7205.61	541062/1000000	0.01	0.014	72.1	4918/4950 pairs	70/100 genes done
7210.94	541466/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
7216.25	541870/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
7221.51	542274/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
7226.90	542679/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
7232.17	543083/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
7237.48	543487/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
7242.75	543891/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
7248.02	544295/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
7253.33	544699/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
7258.63	545103/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
7264.35	545507/1000000	0.01	0.014	70.6	4918/4950 pairs	70/100 genes done
7269.97	545911/1000000	0.01	0.014	71.9	4918/4950 pairs	70/100 genes done
7275.35	546315/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
7280.61	546720/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
7285.83	547124/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
7291.03	547528/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
7296.23	547932/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
7301.49	548336/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
7306.80	548740/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
7312.04	549144/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
7317.32	549548/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
7322.58	549952/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
7327.98	550357/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
7333.23	550761/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
7338.51	551165/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
7343.90	551569/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
7349.14	551973/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
7354.43	552377/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
7359.87	552781/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
7365.16	553185/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
7370.38	553589/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
7375.63	553994/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
7380.95	554398/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
7386.29	554802/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
7391.57	555206/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
7397.41	555610/1000000	0.01	0.014	69.2	4918/4950 pairs	70/100 genes done
7402.69	556014/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
7407.97	556418/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
7413.27	556822/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
7418.61	557226/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
7424.14	557631/1000000	0.01	0.014	73.3	4918/4950 pairs	70/100 genes done
7429.45	558035/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
7434.87	558439/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
7440.25	558843/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
7445.72	559247/1000000	0.01	0.014	73.8	4918/4950 pairs	70/100 genes done
7451.09	559651/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
7456.46	560055/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
7461.88	560459/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
7467.28	560863/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
7472.65	561268/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
7478.11	561672/1000000	0.01	0.014	74.0	4918/4950 pairs	70/100 genes done
7483.66	562076/1000000	0.01	0.014	72.9	4918/4950 pairs	70/100 genes done
7489.02	562480/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
7494.34	562884/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
7499.66	563288/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
7505.03	563692/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
7510.60	564096/1000000	0.01	0.014	72.6	4918/4950 pairs	70/100 genes done
7516.30	564500/1000000	0.01	0.014	70.9	4918/4950 pairs	70/100 genes done
7521.76	564904/1000000	0.01	0.014	73.9	4918/4950 pairs	70/100 genes done
7527.16	565309/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
7532.53	565713/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
7537.92	566117/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
7543.27	566521/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
7548.75	566925/1000000	0.01	0.014	73.8	4918/4950 pairs	70/100 genes done
7554.13	567329/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
7559.53	567733/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
7564.94	568137/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
7570.37	568541/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
7575.83	568946/1000000	0.01	0.013	74.3	4918/4950 pairs	70/100 genes done
7581.22	569350/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
7586.64	569754/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
7592.08	570158/1000000	0.01	0.013	74.3	4918/4950 pairs	70/100 genes done
7597.40	570562/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
7602.76	570966/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
7608.11	571370/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
7613.48	571774/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
7618.81	572178/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
7624.15	572583/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
7629.58	572987/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
7634.95	573391/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
7640.39	573795/1000000	0.01	0.013	74.3	4918/4950 pairs	70/100 genes done
7645.64	574199/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
7650.90	574603/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
7656.13	575007/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
7661.38	575411/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
7666.67	575815/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
7671.99	576220/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
7677.28	576624/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
7682.58	577028/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
7688.12	577432/1000000	0.01	0.014	72.9	4918/4950 pairs	70/100 genes done
7693.55	577836/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
7698.86	578240/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
7704.17	578644/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
7709.46	579048/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
7714.77	579452/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
7720.04	579856/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
7725.40	580261/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
7731.08	580665/1000000	0.01	0.014	71.2	4918/4950 pairs	70/100 genes done
7736.34	581069/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
7741.64	581473/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
7746.89	581877/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
7752.21	582281/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
7757.54	582685/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
7762.99	583089/1000000	0.01	0.013	74.2	4918/4950 pairs	70/100 genes done
7768.31	583493/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
7773.60	583898/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
7778.89	584302/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
7784.22	584706/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
7789.55	585110/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
7794.75	585514/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
7799.99	585918/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
7805.30	586322/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
7810.79	586726/1000000	0.01	0.014	73.6	4918/4950 pairs	70/100 genes done
7816.05	587130/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
7821.31	587535/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
7826.51	587939/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
7831.70	588343/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
7836.91	588747/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
7842.13	589151/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
7847.32	589555/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
7852.69	589959/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
7858.03	590363/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
7863.26	590767/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
7868.52	591172/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
7873.87	591576/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
7879.28	591980/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
7885.04	592384/1000000	0.01	0.014	70.1	4918/4950 pairs	70/100 genes done
7890.29	592788/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
7895.51	593192/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
7900.77	593596/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
7906.10	594000/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
7911.53	594404/1000000	0.01	0.013	74.3	4918/4950 pairs	70/100 genes done
7916.87	594808/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
7922.16	595213/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
7927.64	595617/1000000	0.01	0.014	73.8	4918/4950 pairs	70/100 genes done
7932.95	596021/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
7938.23	596425/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
7943.52	596829/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
7948.75	597233/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
7954.00	597637/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
7959.24	598041/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
7964.48	598445/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
7969.70	598850/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
7975.03	599254/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
7980.31	599658/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
7985.58	600062/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
7990.80	600466/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
7996.14	600870/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
8001.70	601274/1000000	0.01	0.014	72.5	4918/4950 pairs	70/100 genes done
8007.21	601678/1000000	0.01	0.014	73.3	4918/4950 pairs	70/100 genes done
8012.41	602082/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
8017.62	602487/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
8022.82	602891/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
8028.06	603295/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
8033.35	603699/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
8038.62	604103/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
8044.32	604507/1000000	0.01	0.014	71.0	4918/4950 pairs	70/100 genes done
8049.58	604911/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
8054.94	605315/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
8060.13	605719/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
8065.33	606124/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
8070.51	606528/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
8075.75	606932/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
8080.97	607336/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
8086.19	607740/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
8091.43	608144/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
8096.73	608548/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
8102.10	608952/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
8107.31	609356/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
8112.56	609760/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
8117.82	610165/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
8123.13	610569/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
8128.46	610973/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
8133.81	611377/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
8139.05	611781/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
8144.28	612185/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
8149.55	612589/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
8155.01	612993/1000000	0.01	0.014	73.9	4918/4950 pairs	70/100 genes done
8160.39	613397/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
8165.82	613802/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
8171.06	614206/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
8176.28	614610/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
8181.50	615014/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
8186.72	615418/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
8191.95	615822/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
8197.16	616226/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
8202.37	616630/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
8207.61	617034/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
8212.87	617439/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
8218.19	617843/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
8223.82	618247/1000000	0.01	0.014	71.8	4918/4950 pairs	70/100 genes done
8229.05	618651/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
8234.24	619055/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
8239.44	619459/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
8244.76	619863/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
8250.15	620267/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
8255.68	620671/1000000	0.01	0.014	73.1	4918/4950 pairs	70/100 genes done
8260.96	621076/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
8266.22	621480/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
8271.53	621884/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
8276.95	622288/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
8282.50	622692/1000000	0.01	0.014	72.8	4918/4950 pairs	70/100 genes done
8287.82	623096/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
8293.14	623500/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
8298.47	623904/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
8303.80	624308/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
8309.21	624712/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
8314.55	625117/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
8319.87	625521/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
8325.24	625925/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
8330.55	626329/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
8335.93	626733/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
8341.28	627137/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
8346.82	627541/1000000	0.01	0.014	72.8	4918/4950 pairs	70/100 genes done
8352.06	627945/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
8357.29	628349/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
8362.56	628754/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
8367.90	629158/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
8373.50	629562/1000000	0.01	0.014	72.2	4918/4950 pairs	70/100 genes done
8379.12	629966/1000000	0.01	0.014	71.9	4918/4950 pairs	70/100 genes done
8384.46	630370/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
8389.78	630774/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
8395.27	631178/1000000	0.01	0.014	73.5	4918/4950 pairs	70/100 genes done
8400.94	631582/1000000	0.01	0.014	71.3	4918/4950 pairs	70/100 genes done
8406.20	631986/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
8411.45	632391/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
8416.69	632795/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
8421.91	633199/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
8427.15	633603/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
8432.36	634007/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
8437.57	634411/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
8442.79	634815/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
8448.01	635219/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
8453.25	635623/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
8458.46	636028/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
8463.73	636432/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
8469.16	636836/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
8474.66	637240/1000000	0.01	0.014	73.4	4918/4950 pairs	70/100 genes done
8480.01	637644/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
8485.33	638048/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
8490.72	638452/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
8496.09	638856/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
8501.45	639260/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
8506.83	639665/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
8512.26	640069/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
8517.90	640473/1000000	0.01	0.014	71.6	4918/4950 pairs	70/100 genes done
8523.45	640877/1000000	0.01	0.014	72.9	4918/4950 pairs	70/100 genes done
8528.78	641281/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
8534.00	641685/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
8539.24	642089/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
8544.49	642493/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
8549.74	642897/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
8554.97	643301/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
8560.20	643706/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
8565.45	644110/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
8570.69	644514/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
8575.91	644918/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
8581.14	645322/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
8586.40	645726/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
8591.73	646130/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
8597.15	646534/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
8602.39	646938/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
8607.69	647343/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
8613.10	647747/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
8618.61	648151/1000000	0.01	0.014	73.3	4918/4950 pairs	70/100 genes done
8624.04	648555/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
8629.53	648959/1000000	0.01	0.014	73.5	4918/4950 pairs	70/100 genes done
8635.05	649363/1000000	0.01	0.014	73.2	4918/4950 pairs	70/100 genes done
8640.59	649767/1000000	0.01	0.014	72.9	4918/4950 pairs	70/100 genes done
8645.96	650171/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
8651.15	650575/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
8656.37	650980/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
8661.59	651384/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
8666.80	651788/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
8672.02	652192/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
8677.23	652596/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
8682.44	653000/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
8687.67	653404/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
8692.87	653808/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
8698.07	654212/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
8703.30	654617/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
8708.50	655021/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
8713.77	655425/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
8719.14	655829/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
8724.34	656233/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
8729.56	656637/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
8734.80	657041/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
8740.22	657445/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
8745.61	657849/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
8750.94	658253/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
8756.24	658658/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
8761.52	659062/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
8766.83	659466/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
8772.12	659870/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
8777.41	660274/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
8782.63	660678/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
8787.84	661082/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
8793.09	661486/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
8798.36	661890/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
8803.63	662295/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
8808.89	662699/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
8814.15	663103/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
8819.42	663507/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
8824.72	663911/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
8829.96	664315/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
8835.27	664719/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
8840.67	665123/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
8845.97	665527/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
8851.24	665932/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
8856.51	666336/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
8861.94	666740/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
8867.48	667144/1000000	0.01	0.014	72.9	4918/4950 pairs	70/100 genes done
8872.79	667548/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
8878.19	667952/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
8883.43	668356/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
8888.87	668760/1000000	0.01	0.013	74.3	4918/4950 pairs	70/100 genes done
8894.06	669164/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
8899.24	669569/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
8904.40	669973/1000000	0.01	0.013	78.3	4918/4950 pairs	70/100 genes done
8909.57	670377/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
8914.75	670781/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
8919.93	671185/1000000	0.01	0.013	78.1	4918/4950 pairs	70/100 genes done
8925.12	671589/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
8930.27	671993/1000000	0.01	0.013	78.3	4918/4950 pairs	70/100 genes done
8935.45	672397/1000000	0.01	0.013	78.1	4918/4950 pairs	70/100 genes done
8940.61	672801/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
8945.79	673205/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
8951.00	673610/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
8956.20	674014/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
8961.37	674418/1000000	0.01	0.013	78.1	4918/4950 pairs	70/100 genes done
8966.56	674822/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
8971.75	675226/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
8976.97	675630/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
8982.29	676034/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
8987.75	676438/1000000	0.01	0.014	74.0	4918/4950 pairs	70/100 genes done
8993.03	676842/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
8998.61	677247/1000000	0.01	0.014	72.6	4918/4950 pairs	70/100 genes done
9003.87	677651/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
9009.14	678055/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
9014.51	678459/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
9019.81	678863/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
9025.05	679267/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
9030.29	679671/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
9035.54	680075/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
9040.79	680479/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
9046.07	680884/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
9051.28	681288/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
9056.52	681692/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
9061.74	682096/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
9066.96	682500/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
9072.21	682904/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
9077.45	683308/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
9082.67	683712/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
9088.01	684116/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
9093.28	684521/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
9098.53	684925/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
9103.88	685329/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
9109.36	685733/1000000	0.01	0.014	73.7	4918/4950 pairs	70/100 genes done
9114.94	686137/1000000	0.01	0.014	72.4	4918/4950 pairs	70/100 genes done
9120.16	686541/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
9125.45	686945/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
9130.69	687349/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
9136.04	687753/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
9141.26	688157/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
9146.48	688562/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
9151.66	688966/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
9156.86	689370/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
9162.20	689774/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
9167.42	690178/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
9172.64	690582/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
9177.85	690986/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
9183.07	691390/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
9188.30	691794/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
9193.54	692199/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
9198.76	692603/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
9203.98	693007/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
9209.29	693411/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
9214.78	693815/1000000	0.01	0.014	73.5	4918/4950 pairs	70/100 genes done
9220.07	694219/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
9225.50	694623/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
9230.89	695027/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
9236.54	695431/1000000	0.01	0.014	71.4	4918/4950 pairs	70/100 genes done
9241.84	695836/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
9247.07	696240/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
9252.42	696644/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
9257.82	697048/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
9263.10	697452/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
9268.37	697856/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
9273.63	698260/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
9278.91	698664/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
9284.17	699068/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
9289.38	699473/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
9294.55	699877/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
9299.74	700281/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
9304.91	700685/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
9310.09	701089/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
9315.28	701493/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
9320.46	701897/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
9325.65	702301/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
9330.92	702705/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
9336.29	703109/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
9341.64	703514/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
9346.94	703918/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
9352.34	704322/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
9357.83	704726/1000000	0.01	0.014	73.6	4918/4950 pairs	70/100 genes done
9363.06	705130/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
9368.35	705534/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
9373.84	705938/1000000	0.01	0.014	73.6	4918/4950 pairs	70/100 genes done
9379.25	706342/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
9384.51	706746/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
9389.77	707151/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
9395.07	707555/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
9400.38	707959/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
9405.60	708363/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
9410.83	708767/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
9416.08	709171/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
9421.31	709575/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
9426.58	709979/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
9431.83	710383/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
9437.09	710788/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
9442.36	711192/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
9447.63	711596/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
9452.91	712000/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
9458.27	712404/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
9463.58	712808/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
9468.86	713212/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
9474.43	713616/1000000	0.01	0.014	72.5	4918/4950 pairs	70/100 genes done
9479.97	714020/1000000	0.01	0.014	73.0	4918/4950 pairs	70/100 genes done
9485.26	714425/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
9490.52	714829/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
9495.92	715233/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
9501.33	715637/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
9506.71	716041/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
9512.07	716445/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
9517.45	716849/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
9522.86	717253/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
9528.17	717657/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
9533.49	718062/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
9538.79	718466/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
9544.05	718870/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
9549.29	719274/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
9554.57	719678/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
9559.86	720082/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
9565.10	720486/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
9570.41	720890/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
9575.96	721294/1000000	0.01	0.014	72.8	4918/4950 pairs	70/100 genes done
9581.28	721698/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
9586.61	722103/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
9592.06	722507/1000000	0.01	0.013	74.1	4918/4950 pairs	70/100 genes done
9597.35	722911/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
9602.92	723315/1000000	0.01	0.014	72.5	4918/4950 pairs	70/100 genes done
9608.21	723719/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
9613.58	724123/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
9618.78	724527/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
9624.38	724931/1000000	0.01	0.014	72.1	4918/4950 pairs	70/100 genes done
9629.69	725335/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
9634.99	725740/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
9640.30	726144/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
9645.59	726548/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
9650.88	726952/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
9656.21	727356/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
9661.54	727760/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
9666.87	728164/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
9672.14	728568/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
9677.43	728972/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
9682.66	729377/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
9687.92	729781/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
9693.24	730185/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
9698.48	730589/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
9703.83	730993/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
9709.10	731397/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
9714.59	731801/1000000	0.01	0.014	73.7	4918/4950 pairs	70/100 genes done
9719.85	732205/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
9725.30	732609/1000000	0.01	0.013	74.1	4918/4950 pairs	70/100 genes done
9730.59	733014/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
9735.88	733418/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
9741.26	733822/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
9746.67	734226/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
9752.05	734630/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
9757.33	735034/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
9762.60	735438/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
9767.89	735842/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
9773.11	736246/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
9778.33	736650/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
9783.72	737055/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
9789.03	737459/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
9794.24	737863/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
9799.53	738267/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
9804.75	738671/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
9810.03	739075/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
9815.53	739479/1000000	0.01	0.014	73.5	4918/4950 pairs	70/100 genes done
9820.75	739883/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
9826.12	740287/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
9831.57	740692/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
9836.79	741096/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
9842.05	741500/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
9847.29	741904/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
9852.62	742308/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
9857.82	742712/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
9863.04	743116/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
9868.40	743520/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
9874.00	743924/1000000	0.01	0.014	72.2	4918/4950 pairs	70/100 genes done
9879.21	744329/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
9884.41	744733/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
9889.63	745137/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
9894.94	745541/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
9900.23	745945/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
9905.52	746349/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
9910.86	746753/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
9916.14	747157/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
9921.42	747561/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
9926.79	747966/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
9932.14	748370/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
9937.60	748774/1000000	0.01	0.014	74.0	4918/4950 pairs	70/100 genes done
9942.86	749178/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
9948.42	749582/1000000	0.01	0.014	72.7	4918/4950 pairs	70/100 genes done
9953.99	749986/1000000	0.01	0.014	72.5	4918/4950 pairs	70/100 genes done
9959.37	750390/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
9964.85	750794/1000000	0.01	0.014	73.7	4918/4950 pairs	70/100 genes done
9970.43	751198/1000000	0.01	0.014	72.4	4918/4950 pairs	70/100 genes done
9975.87	751602/1000000	0.01	0.013	74.2	4918/4950 pairs	70/100 genes done
9981.19	752007/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
9986.46	752411/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
9991.87	752815/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
9997.25	753219/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
10002.64	753623/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
10007.99	754027/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
10013.23	754431/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
10018.43	754835/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
10023.64	755239/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
10028.83	755644/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
10033.99	756048/1000000	0.01	0.013	78.3	4918/4950 pairs	70/100 genes done
10039.16	756452/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
10044.38	756856/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
10049.76	757260/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
10054.98	757664/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
10060.15	758068/1000000	0.01	0.013	78.1	4918/4950 pairs	70/100 genes done
10065.35	758472/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
10070.67	758876/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
10076.21	759281/1000000	0.01	0.014	73.1	4918/4950 pairs	70/100 genes done
10081.47	759685/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
10086.69	760089/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
10092.07	760493/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
10097.54	760897/1000000	0.01	0.014	73.8	4918/4950 pairs	70/100 genes done
10102.84	761301/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
10108.19	761705/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
10113.46	762109/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
10118.80	762513/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
10124.25	762918/1000000	0.01	0.013	74.2	4918/4950 pairs	70/100 genes done
10129.50	763322/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
10134.78	763726/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
10140.02	764130/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
10145.27	764534/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
10150.48	764938/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
10155.67	765342/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
10160.87	765746/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
10166.13	766150/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
10171.42	766554/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
10176.66	766959/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
10181.86	767363/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
10187.08	767767/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
10192.32	768171/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
10197.72	768575/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
10203.22	768979/1000000	0.01	0.014	73.4	4918/4950 pairs	70/100 genes done
10208.45	769383/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
10213.66	769787/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
10218.96	770191/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
10224.32	770596/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
10229.61	771000/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
10234.88	771404/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
10240.18	771808/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
10245.57	772212/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
10250.76	772616/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
10255.95	773020/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
10261.27	773424/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
10266.63	773828/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
10271.98	774233/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
10277.22	774637/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
10282.45	775041/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
10287.78	775445/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
10292.94	775849/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
10298.14	776253/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
10303.39	776657/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
10308.64	777061/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
10313.90	777465/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
10319.30	777870/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
10324.67	778274/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
10330.03	778678/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
10335.39	779082/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
10340.68	779486/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
10345.96	779890/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
10351.23	780294/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
10356.47	780698/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
10361.88	781102/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
10367.09	781507/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
10372.54	781911/1000000	0.01	0.013	74.1	4918/4950 pairs	70/100 genes done
10377.89	782315/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
10383.25	782719/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
10388.49	783123/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
10393.70	783527/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
10398.96	783931/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
10404.29	784335/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
10409.54	784739/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
10414.75	785143/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
10419.99	785548/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
10425.19	785952/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
10430.40	786356/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
10435.97	786760/1000000	0.01	0.014	72.5	4918/4950 pairs	70/100 genes done
10441.36	787164/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
10446.73	787568/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
10452.06	787972/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
10457.40	788376/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
10462.80	788780/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
10468.27	789185/1000000	0.01	0.014	74.0	4918/4950 pairs	70/100 genes done
10473.68	789589/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
10479.10	789993/1000000	0.01	0.013	74.6	4918/4950 pairs	70/100 genes done
10484.46	790397/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
10489.76	790801/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
10495.16	791205/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
10500.57	791609/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
10505.91	792013/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
10511.22	792417/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
10516.53	792822/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
10521.80	793226/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
10527.04	793630/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
10532.26	794034/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
10537.46	794438/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
10542.67	794842/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
10547.90	795246/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
10553.13	795650/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
10558.47	796054/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
10563.71	796459/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
10569.00	796863/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
10574.26	797267/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
10579.48	797671/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
10584.69	798075/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
10590.01	798479/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
10595.25	798883/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
10600.46	799287/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
10605.67	799691/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
10610.99	800095/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
10616.22	800500/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
10621.49	800904/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
10626.71	801308/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
10631.89	801712/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
10637.17	802116/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
10642.58	802520/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
10647.87	802924/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
10653.10	803328/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
10658.28	803732/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
10663.48	804137/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
10668.68	804541/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
10673.88	804945/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
10679.11	805349/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
10684.32	805753/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
10689.61	806157/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
10694.90	806561/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
10700.17	806965/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
10705.47	807369/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
10710.81	807774/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
10716.15	808178/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
10721.46	808582/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
10726.76	808986/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
10732.06	809390/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
10737.37	809794/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
10742.71	810198/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
10748.06	810602/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
10753.36	811006/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
10758.70	811411/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
10763.95	811815/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
10769.19	812219/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
10774.47	812623/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
10779.70	813027/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
10784.88	813431/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
10790.17	813835/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
10795.39	814239/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
10800.65	814643/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
10805.83	815047/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
10811.22	815452/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
10816.55	815856/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
10821.80	816260/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
10827.07	816664/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
10832.25	817068/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
10837.52	817472/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
10842.84	817876/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
10848.15	818280/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
10853.38	818684/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
10858.71	819089/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
10863.96	819493/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
10869.17	819897/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
10874.51	820301/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
10879.89	820705/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
10885.25	821109/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
10890.58	821513/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
10895.88	821917/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
10901.12	822321/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
10906.34	822726/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
10911.61	823130/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
10916.96	823534/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
10922.14	823938/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
10927.34	824342/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
10932.55	824746/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
10937.78	825150/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
10943.01	825554/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
10948.32	825958/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
10953.70	826363/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
10959.19	826767/1000000	0.01	0.014	73.5	4918/4950 pairs	70/100 genes done
10964.42	827171/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
10969.73	827575/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
10975.11	827979/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
10980.41	828383/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
10985.62	828787/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
10990.87	829191/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
10996.13	829595/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
11001.51	829999/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
11006.74	830404/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
11012.10	830808/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
11017.38	831212/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
11022.59	831616/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
11027.81	832020/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
11033.07	832424/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
11038.38	832828/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
11043.64	833232/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
11048.92	833636/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
11054.16	834041/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
11059.44	834445/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
11064.79	834849/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
11070.14	835253/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
11075.52	835657/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
11080.89	836061/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
11086.12	836465/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
11091.38	836869/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
11096.77	837273/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
11102.03	837678/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
11107.28	838082/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
11112.59	838486/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
11117.88	838890/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
11123.06	839294/1000000	0.01	0.013	78.1	4918/4950 pairs	70/100 genes done
11128.32	839698/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
11133.55	840102/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
11138.87	840506/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
11144.21	840910/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
11149.54	841315/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
11154.83	841719/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
11160.06	842123/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
11165.28	842527/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
11170.46	842931/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
11175.62	843335/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
11180.88	843739/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
11186.11	844143/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
11191.45	844547/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
11196.73	844951/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
11202.04	845356/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
11207.42	845760/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
11212.67	846164/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
11217.96	846568/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
11223.25	846972/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
11228.61	847376/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
11233.85	847780/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
11239.04	848184/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
11244.24	848588/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
11249.45	848993/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
11254.68	849397/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
11259.88	849801/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
11265.08	850205/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
11270.29	850609/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
11275.57	851013/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
11280.88	851417/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
11286.15	851821/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
11291.45	852225/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
11296.77	852630/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
11302.04	853034/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
11307.27	853438/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
11312.57	853842/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
11317.86	854246/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
11323.15	854650/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
11328.37	855054/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
11333.64	855458/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
11338.83	855862/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
11344.21	856267/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
11349.61	856671/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
11354.89	857075/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
11360.16	857479/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
11365.39	857883/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
11370.59	858287/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
11375.86	858691/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
11381.10	859095/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
11386.30	859499/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
11391.55	859904/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
11396.81	860308/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
11402.10	860712/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
11407.33	861116/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
11412.57	861520/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
11417.80	861924/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
11423.04	862328/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
11428.27	862732/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
11433.62	863136/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
11438.91	863540/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
11444.17	863945/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
11449.53	864349/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
11454.95	864753/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
11460.24	865157/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
11465.71	865561/1000000	0.01	0.014	73.8	4918/4950 pairs	70/100 genes done
11471.12	865965/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
11476.33	866369/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
11481.51	866773/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
11486.70	867177/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
11491.94	867582/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
11497.16	867986/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
11502.51	868390/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
11507.95	868794/1000000	0.01	0.013	74.2	4918/4950 pairs	70/100 genes done
11513.40	869198/1000000	0.01	0.013	74.1	4918/4950 pairs	70/100 genes done
11518.97	869602/1000000	0.01	0.014	72.5	4918/4950 pairs	70/100 genes done
11524.40	870006/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
11529.80	870410/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
11535.10	870814/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
11540.32	871219/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
11545.61	871623/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
11550.83	872027/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
11556.05	872431/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
11561.34	872835/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
11566.63	873239/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
11572.02	873643/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
11577.49	874047/1000000	0.01	0.014	74.0	4918/4950 pairs	70/100 genes done
11582.95	874451/1000000	0.01	0.014	73.9	4918/4950 pairs	70/100 genes done
11588.49	874856/1000000	0.01	0.014	73.1	4918/4950 pairs	70/100 genes done
11593.77	875260/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
11598.98	875664/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
11604.21	876068/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
11609.43	876472/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
11614.66	876876/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
11619.93	877280/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
11625.23	877684/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
11630.53	878088/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
11635.78	878492/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
11641.04	878897/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
11646.24	879301/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
11651.43	879705/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
11656.73	880109/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
11661.99	880513/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
11667.28	880917/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
11672.54	881321/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
11677.81	881725/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
11683.07	882129/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
11688.42	882534/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
11693.71	882938/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
11698.95	883342/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
11704.20	883746/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
11709.46	884150/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
11714.81	884554/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
11720.10	884958/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
11725.32	885362/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
11730.50	885766/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
11735.70	886171/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
11740.92	886575/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
11746.10	886979/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
11751.39	887383/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
11756.68	887787/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
11762.03	888191/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
11767.25	888595/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
11772.45	888999/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
11777.66	889403/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
11782.88	889808/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
11788.12	890212/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
11793.33	890616/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
11798.54	891020/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
11803.76	891424/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
11809.01	891828/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
11814.28	892232/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
11819.73	892636/1000000	0.01	0.013	74.2	4918/4950 pairs	70/100 genes done
11825.07	893040/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
11830.38	893444/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
11835.73	893849/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
11841.11	894253/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
11846.40	894657/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
11851.65	895061/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
11856.91	895465/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
11862.15	895869/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
11867.46	896273/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
11872.69	896677/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
11878.06	897081/1000000	0.01	0.013	75.2	4918/4950 pairs	70/100 genes done
11883.50	897486/1000000	0.01	0.013	74.4	4918/4950 pairs	70/100 genes done
11888.67	897890/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
11893.88	898294/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
11899.09	898698/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
11904.27	899102/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
11909.43	899506/1000000	0.01	0.013	78.3	4918/4950 pairs	70/100 genes done
11914.64	899910/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
11919.80	900314/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
11924.96	900718/1000000	0.01	0.013	78.4	4918/4950 pairs	70/100 genes done
11930.17	901123/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
11935.43	901527/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
11940.73	901931/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
11946.03	902335/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
11951.37	902739/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
11956.65	903143/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
11961.94	903547/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
11967.27	903951/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
11972.51	904355/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
11977.76	904760/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
11983.01	905164/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
11988.29	905568/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
11993.60	905972/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
11998.99	906376/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
12004.40	906780/1000000	0.01	0.013	74.7	4918/4950 pairs	70/100 genes done
12009.63	907184/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
12014.87	907588/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
12020.14	907992/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
12025.35	908396/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
12030.61	908801/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
12035.84	909205/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
12041.07	909609/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
12046.33	910013/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
12051.62	910417/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
12056.89	910821/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
12062.31	911225/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
12067.69	911629/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
12072.98	912033/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
12078.20	912438/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
12083.46	912842/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
12088.69	913246/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
12093.89	913650/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
12099.09	914054/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
12104.35	914458/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
12109.60	914862/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
12114.88	915266/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
12120.27	915670/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
12125.74	916075/1000000	0.01	0.013	74.1	4918/4950 pairs	70/100 genes done
12131.02	916479/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
12136.21	916883/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
12141.45	917287/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
12146.63	917691/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
12151.80	918095/1000000	0.01	0.013	78.3	4918/4950 pairs	70/100 genes done
12156.97	918499/1000000	0.01	0.013	78.1	4918/4950 pairs	70/100 genes done
12162.13	918903/1000000	0.01	0.013	78.3	4918/4950 pairs	70/100 genes done
12167.33	919307/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
12172.56	919712/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
12177.90	920116/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
12183.41	920520/1000000	0.01	0.014	73.3	4918/4950 pairs	70/100 genes done
12188.87	920924/1000000	0.01	0.014	74.0	4918/4950 pairs	70/100 genes done
12194.23	921328/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
12199.65	921732/1000000	0.01	0.013	74.5	4918/4950 pairs	70/100 genes done
12204.97	922136/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
12210.33	922540/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
12215.71	922944/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
12220.97	923349/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
12226.20	923753/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
12231.48	924157/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
12236.79	924561/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
12242.18	924965/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
12247.54	925369/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
12252.81	925773/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
12258.07	926177/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
12263.32	926581/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
12268.59	926985/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
12273.83	927390/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
12279.07	927794/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
12284.30	928198/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
12289.53	928602/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
12294.78	929006/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
12300.17	929410/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
12305.53	929814/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
12310.89	930218/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
12316.06	930622/1000000	0.01	0.013	78.1	4918/4950 pairs	70/100 genes done
12321.29	931027/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
12326.47	931431/1000000	0.01	0.013	78.1	4918/4950 pairs	70/100 genes done
12331.78	931835/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
12337.13	932239/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
12342.38	932643/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
12347.59	933047/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
12352.83	933451/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
12358.07	933855/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
12363.38	934259/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
12368.75	934664/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
12373.99	935068/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
12379.27	935472/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
12384.49	935876/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
12389.72	936280/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
12394.95	936684/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
12400.18	937088/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
12405.39	937492/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
12410.61	937896/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
12415.88	938301/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
12421.12	938705/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
12426.34	939109/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
12431.66	939513/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
12437.04	939917/1000000	0.01	0.013	75.1	4918/4950 pairs	70/100 genes done
12442.40	940321/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
12447.68	940725/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
12452.96	941129/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
12458.31	941533/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
12463.56	941937/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
12468.76	942342/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
12473.95	942746/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
12479.18	943150/1000000	0.01	0.013	77.3	4918/4950 pairs	70/100 genes done
12484.42	943554/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
12489.82	943958/1000000	0.01	0.013	74.8	4918/4950 pairs	70/100 genes done
12495.19	944362/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
12500.46	944766/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
12505.73	945170/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
12510.92	945574/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
12516.15	945979/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
12521.40	946383/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
12526.65	946787/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
12531.92	947191/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
12537.27	947595/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
12542.52	947999/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
12547.73	948403/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
12553.00	948807/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
12558.34	949211/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
12563.60	949616/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
12568.84	950020/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
12574.03	950424/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
12579.28	950828/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
12584.60	951232/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
12589.81	951636/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
12595.01	952040/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
12600.23	952444/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
12605.40	952848/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
12610.60	953253/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
12615.78	953657/1000000	0.01	0.013	78.1	4918/4950 pairs	70/100 genes done
12620.96	954061/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
12626.15	954465/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
12631.41	954869/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
12636.66	955273/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
12641.91	955677/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
12647.14	956081/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
12652.44	956485/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
12657.77	956889/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
12662.95	957294/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
12668.12	957698/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
12673.28	958102/1000000	0.01	0.013	78.3	4918/4950 pairs	70/100 genes done
12678.50	958506/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
12683.89	958910/1000000	0.01	0.013	74.9	4918/4950 pairs	70/100 genes done
12689.09	959314/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
12694.35	959718/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
12699.54	960122/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
12704.83	960526/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
12710.21	960931/1000000	0.01	0.013	75.4	4918/4950 pairs	70/100 genes done
12715.39	961335/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
12720.59	961739/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
12725.85	962143/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
12731.11	962547/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
12736.36	962951/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
12741.68	963355/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
12746.93	963759/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
12752.20	964163/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
12757.52	964568/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
12762.81	964972/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
12768.11	965376/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
12773.37	965780/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
12778.64	966184/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
12783.83	966588/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
12789.04	966992/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
12794.24	967396/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
12799.43	967800/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
12804.76	968205/1000000	0.01	0.013	76.0	4918/4950 pairs	70/100 genes done
12810.05	968609/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
12815.23	969013/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
12820.51	969417/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
12825.69	969821/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
12830.95	970225/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
12836.19	970629/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
12841.35	971033/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
12846.54	971437/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
12851.89	971841/1000000	0.01	0.013	75.6	4918/4950 pairs	70/100 genes done
12857.17	972246/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
12862.56	972650/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
12867.88	973054/1000000	0.01	0.013	75.9	4918/4950 pairs	70/100 genes done
12873.17	973458/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
12878.38	973862/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
12883.64	974266/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
12888.84	974670/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
12894.09	975074/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
12899.35	975478/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
12904.60	975883/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
12909.80	976287/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
12915.01	976691/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
12920.16	977095/1000000	0.01	0.013	78.3	4918/4950 pairs	70/100 genes done
12925.33	977499/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
12930.67	977903/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
12936.00	978307/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
12941.25	978711/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
12946.53	979115/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
12951.81	979520/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
12957.11	979924/1000000	0.01	0.013	76.2	4918/4950 pairs	70/100 genes done
12962.27	980328/1000000	0.01	0.013	78.3	4918/4950 pairs	70/100 genes done
12967.51	980732/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
12972.75	981136/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
12978.01	981540/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
12983.20	981944/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
12988.39	982348/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
12993.59	982752/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
12998.80	983157/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
13004.06	983561/1000000	0.01	0.013	76.8	4918/4950 pairs	70/100 genes done
13009.33	983965/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
13014.66	984369/1000000	0.01	0.013	75.8	4918/4950 pairs	70/100 genes done
13019.82	984773/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
13024.99	985177/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
13030.15	985581/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
13035.32	985985/1000000	0.01	0.013	78.2	4918/4950 pairs	70/100 genes done
13040.51	986389/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
13045.76	986793/1000000	0.01	0.013	77.1	4918/4950 pairs	70/100 genes done
13051.02	987198/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
13056.37	987602/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
13061.61	988006/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
13066.86	988410/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
13072.06	988814/1000000	0.01	0.013	77.6	4918/4950 pairs	70/100 genes done
13077.40	989218/1000000	0.01	0.013	75.7	4918/4950 pairs	70/100 genes done
13082.71	989622/1000000	0.01	0.013	76.1	4918/4950 pairs	70/100 genes done
13087.92	990026/1000000	0.01	0.013	77.5	4918/4950 pairs	70/100 genes done
13093.14	990430/1000000	0.01	0.013	77.4	4918/4950 pairs	70/100 genes done
13098.43	990835/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
13103.68	991239/1000000	0.01	0.013	76.9	4918/4950 pairs	70/100 genes done
13108.91	991643/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
13114.18	992047/1000000	0.01	0.013	76.7	4918/4950 pairs	70/100 genes done
13119.53	992451/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
13124.82	992855/1000000	0.01	0.013	76.4	4918/4950 pairs	70/100 genes done
13130.06	993259/1000000	0.01	0.013	77.0	4918/4950 pairs	70/100 genes done
13135.36	993663/1000000	0.01	0.013	76.3	4918/4950 pairs	70/100 genes done
13140.59	994067/1000000	0.01	0.013	77.2	4918/4950 pairs	70/100 genes done
13145.79	994472/1000000	0.01	0.013	77.8	4918/4950 pairs	70/100 genes done
13150.98	994876/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
13156.16	995280/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
13161.33	995684/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done
13166.52	996088/1000000	0.01	0.013	77.9	4918/4950 pairs	70/100 genes done
13171.72	996492/1000000	0.01	0.013	77.7	4918/4950 pairs	70/100 genes done
13177.00	996896/1000000	0.01	0.013	76.6	4918/4950 pairs	70/100 genes done
13182.46	997300/1000000	0.01	0.014	73.9	4918/4950 pairs	70/100 genes done
13187.81	997704/1000000	0.01	0.013	75.5	4918/4950 pairs	70/100 genes done
13193.21	998109/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
13198.60	998513/1000000	0.01	0.013	75.0	4918/4950 pairs	70/100 genes done
13203.96	998917/1000000	0.01	0.013	75.3	4918/4950 pairs	70/100 genes done
13209.24	999321/1000000	0.01	0.013	76.5	4918/4950 pairs	70/100 genes done
13214.42	999725/1000000	0.01	0.013	78.0	4918/4950 pairs	70/100 genes done

Top gene-gene pairs:
BRAF	KRAS	0.000040	0.136809	anti-correlated
APC	BRAF	0.000055	0.136809	anti-correlated
TP53	ATM	0.000318	0.525287	anti-correlated
TP53	FLG	0.001614	0.840407	anti-correlated
PIK3CA	TP53	0.003209	0.840407	anti-correlated
TP53	ARID1A	0.003795	0.840407	anti-correlated
TP53	SOX9	0.004977	0.840407	anti-correlated
KRAS	ACVR2A	0.005733	0.840407	anti-correlated
FAM123B	TP53	0.005834	0.840407	anti-correlated
BRAF	TP53	0.008328	0.840407	anti-correlated
TP53	TRPC4	0.009323	0.840407	anti-correlated
TP53	FAT4	0.011881	0.840407	anti-correlated
TP53	SYNE1	0.013969	0.840407	anti-correlated
TP53	DOCK2	0.014135	0.840407	anti-correlated
APC	EPHA3	0.015103	0.840407	anti-correlated
LRP1B	PDZRN4	0.017544	0.840407	correlated
APC	CDH8	0.019931	0.840407	anti-correlated
TMEM132D	CDH18	0.020101	0.840407	correlated
TP53	PDZRN4	0.022711	0.840407	anti-correlated
TP53	LRP1B	0.028364	0.840407	anti-correlated
KRAS	GPC6	0.028774	0.840407	anti-correlated
KRAS	PCDHA10	0.028774	0.840407	anti-correlated
TP53	CCBP2	0.030704	0.840407	anti-correlated
TP53	OR2L13	0.030704	0.840407	anti-correlated
UBE2NL	ARID2	0.033333	0.840407	correlated
KRAS	EPHA3	0.035638	0.840407	anti-correlated
TP53	ANK2	0.036018	0.840407	anti-correlated
APC	FBXW7	0.036215	0.840407	anti-correlated
DOCK2	CSMD3	0.037736	0.840407	correlated
TP53	ATP10A	0.038171	0.840407	anti-correlated
DOCK2	CCDC160	0.038462	0.840407	correlated
OSTN	ARID2	0.038835	0.840407	correlated
TP53	DNAH5	0.039190	0.840407	anti-correlated
TP53	DKK4	0.039812	0.840407	anti-correlated
TP53	CCDC160	0.039812	0.840407	anti-correlated
PTEN	CDH9	0.040000	0.840407	correlated
FBXW7	TP53	0.041513	0.840407	anti-correlated
TP53	ZC3H13	0.042201	0.840407	anti-correlated
CDH2	CDH9	0.043478	0.840407	correlated
KIAA1804	CCDC160	0.045455	0.840407	correlated
TP53	DCHS2	0.045720	0.840407	anti-correlated
TP53	ACVR1B	0.047954	0.840407	anti-correlated
TP53	CDH8	0.047954	0.840407	anti-correlated
HCN1	OR2L13	0.048193	0.840407	correlated
PIK3CA	ANK2	0.050460	0.840407	none
PIK3CA	SMAD2	0.051397	0.840407	none
PIK3CA	TLL1	0.051397	0.840407	none
PIK3CA	GRIA1	0.051397	0.840407	none
CNTN6	NALCN	0.051568	0.840407	none
CNTN6	PTPRM	0.051568	0.840407	none
NALCN	AFF2	0.051568	0.840407	none
NALCN	EVC2	0.051568	0.840407	none
PTPRM	GRIK3	0.051568	0.840407	none
PTPRM	EVC2	0.051568	0.840407	none
LRP1B	CPXCR1	0.051585	0.840407	none
KRAS	LIFR	0.052230	0.840407	none
OR2M4	CHRDL1	0.052316	0.840407	none
ANK2	MGC26647	0.052454	0.840407	none
SMAD4	OR2M4	0.052575	0.840407	none
WBSCR17	BAI3	0.052652	0.840407	none
Analyzing power per gene...
1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
17000/18030 18000/18030 
1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
ERROR in single_screen_power_smooth for gene TTN:
Improper assignment with rectangular empty matrix.
17000/18030 18000/18030 
Generating gene coverage plots...
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/1.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/2.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/3.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/4.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/5.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/6.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/7.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/8.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/9.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/10.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/11.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/12.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/13.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/14.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/15.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/16.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/17.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/18.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/19.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/20.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/21.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/22.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/23.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/24.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/25.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/26.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/27.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/28.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/29.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/30.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/31.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/32.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/33.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/34.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/35.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/36.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/37.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/38.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/39.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/40.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/41.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/42.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/43.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/44.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/45.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/46.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/47.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/48.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/49.png
Superimposing mutations
Outputting figure to ./COADREAD.gene_coverage_plots/50.png
generate_gene_coverage_plots finished
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 0 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200
*** Prepare stdandard out:
cat: prepare.out: No such file or directory
*** Prepare stdandard err:
cat: prepare.err: No such file or directory
*** Scatter stdandard out:
Sender: LSF System <lsf@node1712>
Subject: Job 9893791: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1712>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000001> was used as the working directory.
Started at Fri Oct  5 23:50:55 2012
Results reported at Sat Oct  6 00:04:25 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000001.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000001.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 1  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000001.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    809.08 sec.
    Max Memory :      3499 MB
    Max Swap   :      5991 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
1
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 1
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 1: processing genes 1 - 90
Calculating significance of each gene.
Using projection method.
1	A1BG	1
2	A1CF	4.098312e-01
3	A2BP1	5.839066e-01
4	A2M	1.371598e-01
5	A2ML1	6.223566e-01
6	A4GALT	3.986654e-01
7	A4GNT	1.290499e-02
8	AAAS	5.207152e-01
9	AACS	7.140899e-01
10	AADAC	2.422888e-01
11	AADACL2	1.928816e-01
12	AADACL3	6.037072e-01
13	AADACL4	1.456559e-01
14	AADAT	7.170744e-01
15	AAGAB	6.792466e-01
16	AAK1	8.940836e-01
17	AAMP	1
18	AANAT	1
19	AARS	7.864911e-01
20	AARS2	7.393725e-01
21	AARSD1	7.600356e-01
22	AASDH	6.755336e-01
23	AASDHPPT	1.235212e-01
24	AASS	5.968444e-02
25	AATF	7.870492e-01
26	AATK	1
27	ABAT	1.707728e-01
28	ABCA1	1.442101e-02
29	ABCA10	3.280970e-01
30	ABCA12	9.138441e-05
31	ABCA13	9.037084e-02
32	ABCA2	1
33	ABCA3	9.849683e-01
34	ABCA4	8.050328e-01
35	ABCA5	1.592017e-01
36	ABCA6	4.330730e-01
37	ABCA7	9.900911e-01
38	ABCA8	4.145512e-02
39	ABCA9	3.993203e-01
40	ABCB1	3.186506e-01
41	ABCB10	5.122574e-01
42	ABCB11	5.083979e-01
43	ABCB4	2.181073e-02
In gene ABCB5 the following bins exceed PROBCAP:
    COAD-AA-3529	categ 6	N = 3923    n = 1	mu =   2.41e-07
44	ABCB5	2.842012e-01
45	ABCB6	5.752679e-01
46	ABCB7	8.173939e-01
47	ABCB8	5.739306e-01
48	ABCB9	9.284443e-01
49	ABCC1	7.235768e-01
50	ABCC10	7.696413e-01
51	ABCC11	1.612827e-01
52	ABCC12	1.744322e-01
53	ABCC2	7.348768e-02
54	ABCC3	8.558661e-01
55	ABCC4	1.325304e-01
56	ABCC5	6.226041e-01
57	ABCC6	7.880045e-01
58	ABCC8	7.529950e-01
59	ABCC9	8.239623e-01
60	ABCD1	6.105284e-01
61	ABCD2	4.003790e-02
62	ABCD3	6.515062e-01
63	ABCD4	4.755422e-01
64	ABCE1	1
65	ABCF1	8.164101e-01
66	ABCF2	3.885835e-01
67	ABCF3	7.066124e-01
68	ABCG1	3.377788e-01
69	ABCG2	1.664892e-01
70	ABCG4	7.800808e-01
71	ABCG5	9.190701e-01
In gene ABCG8 the following bins exceed PROBCAP:
    COAD-AA-3522	categ 6	N = 2074    n = 1	mu =   1.03e-07
72	ABCG8	5.377897e-01
73	ABHD1	1
74	ABHD10	7.060327e-01
75	ABHD11	1
76	ABHD12	5.902256e-01
77	ABHD12B	1.762852e-01
78	ABHD13	3.060971e-01
79	ABHD14A	1
80	ABHD14B	1.062073e-01
81	ABHD15	8.946938e-01
82	ABHD2	2.867662e-01
83	ABHD3	6.234891e-01
84	ABHD4	4.788771e-01
85	ABHD5	4.254170e-01
86	ABHD6	4.454968e-01
87	ABHD8	1
88	ABI1	3.398651e-01
89	ABI2	9.359217e-01
90	ABI3	4.180054e-01
Done

Running MutSig 2:
Scatter job 1: processing genes 1 - 90
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ABCA13
Processing conservation and coverage...
65% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.144239e-02	ci left: 7.613202e-01	ci right 7.779225e-01	k: 7697	n:10000
KS ci ratio: 1.730052e-02	ci left: 8.296127e-01	ci right 8.441905e-01	k: 8370	n:10000
ABCA13   10000 perm   4 sec   (2535 perm/sec)   p_kst 8.370000e-01   p_cons 7.697000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABCA13.40_15254_10000_0.837_0.7697_1.png
                gene_name: ABCA13
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 1 percent done.
ABCA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.243869e-02	ci left: 7.446266e-01	ci right 7.616257e-01	k: 7532	n:10000
Cons ci ratio: 1.172054e-02	ci left: 9.124500e-01	ci right 9.233051e-01	k: 9180	n:10000
KS ci ratio: 2.721712e-02	ci left: 6.654179e-01	ci right 6.838802e-01	k: 6747	n:10000
ABCA12   10000 perm   3 sec   (3413 perm/sec)   p_kst 6.747000e-01   p_cons 9.180000e-01   p_joint 7.532000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA12.33_8031_10000_0.6747_0.918_0.7532.png
                gene_name: ABCA12
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 3 percent done.
ABCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.463008e-02	ci left: 5.518081e-01	ci right 5.713560e-01	k: 5616	n:10000
Cons ci ratio: 6.649439e-02	ci left: 2.492482e-01	ci right 2.664931e-01	k: 2578	n:10000
KS ci ratio: 1.223412e-02	ci left: 9.055571e-01	ci right 9.168020e-01	k: 9113	n:10000
ABCA1   10000 perm   3 sec   (3763 perm/sec)   p_kst 9.113000e-01   p_cons 2.578000e-01   p_joint 5.616000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA1.22_6982_10000_0.9113_0.2578_0.5616.png
                gene_name: ABCA1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 4 percent done.
ABCA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.518897e-02	ci left: 5.438924e-01	ci right 5.634763e-01	k: 5537	n:10000
Cons ci ratio: 3.474272e-02	ci left: 5.502047e-01	ci right 5.697603e-01	k: 5600	n:10000
KS ci ratio: 5.329191e-02	ci left: 3.416399e-01	ci right 3.604469e-01	k: 3510	n:10000
ABCA9   10000 perm   3 sec   (3950 perm/sec)   p_kst 3.510000e-01   p_cons 5.600000e-01   p_joint 5.537000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA9.18_5027_10000_0.351_0.56_0.5537.png
                gene_name: ABCA9
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 5 percent done.
ABCA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.133354e-02	ci left: 7.631424e-01	ci right 7.796992e-01	k: 7715	n:10000
Cons ci ratio: 7.746257e-03	ci left: 9.585892e-01	ci right 9.661384e-01	k: 9625	n:10000
KS ci ratio: 3.473567e-02	ci left: 5.503049e-01	ci right 5.698601e-01	k: 5601	n:10000
ABCA5   10000 perm   3 sec   (3905 perm/sec)   p_kst 5.601000e-01   p_cons 9.625000e-01   p_joint 7.715000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA5.17_5081_10000_0.5601_0.9625_0.7715.png
                gene_name: ABCA5
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 7 percent done.
ABCA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.823030e-02	ci left: 8.145627e-01	ci right 8.296492e-01	k: 8222	n:10000
KS ci ratio: 6.106031e-03	ci left: 9.732324e-01	ci right 9.792858e-01	k: 9764	n:10000
ABCA6   10000 perm   2 sec   (4135 perm/sec)   p_kst 9.764000e-01   p_cons 8.222000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABCA6.17_5006_10000_0.9764_0.8222_1.png
                gene_name: ABCA6
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
ABCA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.268173e-01	ci left: 2.570435e-02	ci right 3.237377e-02	k: 289	n:10000
Cons ci ratio: 3.469974e-01	ci left: 1.041531e-02	ci right 1.487532e-02	k: 125	n:10000
KS ci ratio: 7.577795e-02	ci left: 2.030380e-01	ci right 2.191306e-01	k: 2110	n:10000
ABCA8   10000 perm   2 sec   (4006 perm/sec)   p_kst 2.110000e-01   p_cons 1.250000e-02   p_joint 2.890000e-02

Joint ci ratio: 1.522032e-01	ci left: 2.965219e-02	ci right 3.458507e-02	k: 641	n:20000
Cons ci ratio: 2.424634e-01	ci left: 1.133522e-02	ci right 1.450873e-02	k: 257	n:20000
KS ci ratio: 5.544514e-02	ci left: 1.943763e-01	ci right 2.055110e-01	k: 3998	n:20000
ABCA8   20000 perm   5 sec   (3725 perm/sec)   p_kst 1.999000e-01   p_cons 1.285000e-02   p_joint 3.205000e-02

Joint ci ratio: 9.497382e-02	ci left: 5.117578e-02	ci right 5.631108e-02	k: 1611	n:30000
Cons ci ratio: 2.000777e-01	ci left: 1.136853e-02	ci right 1.392715e-02	k: 378	n:30000
KS ci ratio: 4.557266e-02	ci left: 1.933052e-01	ci right 2.023534e-01	k: 5934	n:30000
ABCA8   30000 perm   8 sec   (3651 perm/sec)   p_kst 1.978000e-01   p_cons 1.260000e-02   p_joint 5.370000e-02

Joint ci ratio: 1.010600e-01	ci left: 3.441514e-02	ci right 3.810258e-02	k: 1449	n:40000
Cons ci ratio: 1.759974e-01	ci left: 1.117113e-02	ci right 1.335053e-02	k: 489	n:40000
KS ci ratio: 3.878507e-02	ci left: 1.994644e-01	ci right 2.073787e-01	k: 8136	n:40000
ABCA8   40000 perm   11 sec   (3596 perm/sec)   p_kst 2.034000e-01   p_cons 1.222500e-02   p_joint 3.622500e-02

Joint ci ratio: 8.695190e-02	ci left: 3.735907e-02	ci right 4.077471e-02	k: 1952	n:50000
Cons ci ratio: 1.540772e-01	ci left: 1.179458e-02	ci right 1.378258e-02	k: 638	n:50000
KS ci ratio: 3.489570e-02	ci left: 1.979915e-01	ci right 2.050432e-01	k: 10075	n:50000
ABCA8   50000 perm   14 sec   (3557 perm/sec)   p_kst 2.015000e-01   p_cons 1.276000e-02   p_joint 3.904000e-02

Joint ci ratio: 9.282141e-02	ci left: 2.752516e-02	ci right 3.022067e-02	k: 1731	n:60000
Cons ci ratio: 1.515111e-01	ci left: 1.019685e-02	ci right 1.188428e-02	k: 661	n:60000
KS ci ratio: 3.184902e-02	ci left: 1.983629e-01	ci right 2.047994e-01	k: 12094	n:60000
ABCA8   60000 perm   17 sec   (3503 perm/sec)   p_kst 2.015667e-01   p_cons 1.101667e-02   p_joint 2.885000e-02

Joint ci ratio: 7.781363e-02	ci left: 3.362269e-02	ci right 3.635889e-02	k: 2448	n:70000
Cons ci ratio: 1.384999e-01	ci left: 1.053015e-02	ci right 1.211075e-02	k: 791	n:70000
KS ci ratio: 2.956106e-02	ci left: 1.977951e-01	ci right 2.037440e-01	k: 14053	n:70000
ABCA8   70000 perm   20 sec   (3444 perm/sec)   p_kst 2.007571e-01   p_cons 1.130000e-02   p_joint 3.497143e-02

Joint ci ratio: 7.451378e-02	ci left: 3.219016e-02	ci right 3.469383e-02	k: 2674	n:80000
Cons ci ratio: 1.298559e-01	ci left: 1.053068e-02	ci right 1.200509e-02	k: 900	n:80000
KS ci ratio: 2.760747e-02	ci left: 1.985012e-01	ci right 2.040705e-01	k: 16102	n:80000
ABCA8   80000 perm   24 sec   (3333 perm/sec)   p_kst 2.012750e-01   p_cons 1.125000e-02   p_joint 3.342500e-02

Joint ci ratio: 7.498981e-02	ci left: 2.836055e-02	ci right 3.058102e-02	k: 2651	n:90000
Cons ci ratio: 1.233949e-01	ci left: 1.040421e-02	ci right 1.178313e-02	k: 997	n:90000
KS ci ratio: 2.602307e-02	ci left: 1.987287e-01	ci right 2.039795e-01	k: 18121	n:90000
ABCA8   90000 perm   27 sec   (3299 perm/sec)   p_kst 2.013444e-01   p_cons 1.107778e-02   p_joint 2.945556e-02

Joint ci ratio: 7.566229e-02	ci left: 2.515005e-02	ci right 2.713756e-02	k: 2613	n:100000
Cons ci ratio: 1.174860e-01	ci left: 1.036275e-02	ci right 1.166584e-02	k: 1100	n:100000
KS ci ratio: 2.467274e-02	ci left: 1.990574e-01	ci right 2.040400e-01	k: 20154	n:100000
ABCA8   100000 perm   31 sec   (3253 perm/sec)   p_kst 2.015400e-01   p_cons 1.100000e-02   p_joint 2.613000e-02

Joint ci ratio: 6.225378e-02	ci left: 3.370677e-02	ci right 3.588148e-02	k: 3826	n:110000
Cons ci ratio: 1.126362e-01	ci left: 1.027710e-02	ci right 1.151253e-02	k: 1197	n:110000
KS ci ratio: 2.349700e-02	ci left: 1.995493e-01	ci right 2.043028e-01	k: 22211	n:110000
ABCA8   110000 perm   34 sec   (3221 perm/sec)   p_kst 2.019182e-01   p_cons 1.088182e-02   p_joint 3.478182e-02

Joint ci ratio: 6.310054e-02	ci left: 3.017426e-02	ci right 3.214848e-02	k: 3738	n:120000
Cons ci ratio: 1.082145e-01	ci left: 1.023098e-02	ci right 1.140950e-02	k: 1297	n:120000
KS ci ratio: 2.247882e-02	ci left: 1.999057e-01	ci right 2.044587e-01	k: 24261	n:120000
ABCA8   120000 perm   38 sec   (3192 perm/sec)   p_kst 2.021750e-01   p_cons 1.080833e-02   p_joint 3.115000e-02

Joint ci ratio: 5.678447e-02	ci left: 3.435650e-02	ci right 3.637198e-02	k: 4596	n:130000
Cons ci ratio: 1.039380e-01	ci left: 1.026021e-02	ci right 1.139254e-02	k: 1406	n:130000
KS ci ratio: 2.162265e-02	ci left: 1.996135e-01	ci right 2.039845e-01	k: 26233	n:130000
ABCA8   130000 perm   41 sec   (3159 perm/sec)   p_kst 2.017923e-01   p_cons 1.081538e-02   p_joint 3.535385e-02

Joint ci ratio: 5.709031e-02	ci left: 3.164770e-02	ci right 3.351458e-02	k: 4560	n:140000
Cons ci ratio: 1.005008e-01	ci left: 1.020943e-02	ci right 1.129669e-02	k: 1504	n:140000
KS ci ratio: 2.083426e-02	ci left: 1.997216e-01	ci right 2.039336e-01	k: 28255	n:140000
ABCA8   140000 perm   45 sec   (3118 perm/sec)   p_kst 2.018214e-01   p_cons 1.074286e-02   p_joint 3.257143e-02

Joint ci ratio: 5.759872e-02	ci left: 2.908990e-02	ci right 3.082167e-02	k: 4492	n:150000
Cons ci ratio: 9.698663e-02	ci left: 1.025054e-02	ci right 1.130183e-02	k: 1615	n:150000
KS ci ratio: 2.011835e-02	ci left: 1.999441e-01	ci right 2.040141e-01	k: 30296	n:150000
ABCA8   150000 perm   49 sec   (3087 perm/sec)   p_kst 2.019733e-01   p_cons 1.076667e-02   p_joint 2.994667e-02

Outputting figure to mutsig2_images.part000000000001/ABCA8.17_4894_150000_0.20197_0.010767_0.029947.png
                gene_name: ABCA8
               theta_stop: 0.097 
                    nperm: 150000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.010 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 9 percent done.
ABCA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.583216e-02	ci left: 6.880881e-01	ci right 7.061970e-01	k: 6972	n:10000
KS ci ratio: 1.836104e-02	ci left: 8.124288e-01	ci right 8.275843e-01	k: 8201	n:10000
ABCA4   10000 perm   2 sec   (4057 perm/sec)   p_kst 8.201000e-01   p_cons 6.972000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABCA4.14_7022_10000_0.8201_0.6972_1.png
                gene_name: ABCA4
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
ABCB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.528124e-02	ci left: 4.185735e-01	ci right 4.380683e-01	k: 4283	n:10000
Cons ci ratio: 6.883135e-02	ci left: 2.363980e-01	ci right 2.533508e-01	k: 2448	n:10000
KS ci ratio: 4.354932e-02	ci left: 4.377208e-01	ci right 4.573098e-01	k: 4475	n:10000
ABCB5   10000 perm   2 sec   (4501 perm/sec)   p_kst 4.475000e-01   p_cons 2.448000e-01   p_joint 4.283000e-01

Outputting figure to mutsig2_images.part000000000001/ABCB5.14_3923_10000_0.4475_0.2448_0.4283.png
                gene_name: ABCB5
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 12 percent done.
ABCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.743326e-02	ci left: 3.085789e-01	ci right 3.269274e-01	k: 3177	n:10000
Cons ci ratio: 1.119938e-02	ci left: 9.192503e-01	ci right 9.297008e-01	k: 9246	n:10000
KS ci ratio: 9.965007e-02	ci left: 1.272828e-01	ci right 1.407312e-01	k: 1339	n:10000
ABCC2   10000 perm   3 sec   (3879 perm/sec)   p_kst 1.339000e-01   p_cons 9.246000e-01   p_joint 3.177000e-01

Outputting figure to mutsig2_images.part000000000001/ABCC2.14_4766_10000_0.1339_0.9246_0.3177.png
                gene_name: ABCC2
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 14 percent done.
A2M
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.769459e-02	ci left: 1.949567e-01	ci right 2.108168e-01	k: 2028	n:10000
Cons ci ratio: 2.166412e-01	ci left: 2.825837e-02	ci right 3.521793e-02	k: 316	n:10000
KS ci ratio: 4.479465e-02	ci left: 4.238575e-01	ci right 4.433812e-01	k: 4336	n:10000
A2M   10000 perm   2 sec   (4094 perm/sec)   p_kst 4.336000e-01   p_cons 3.160000e-02   p_joint 2.028000e-01

Joint ci ratio: 6.308832e-02	ci left: 1.566712e-01	ci right 1.669273e-01	k: 3235	n:20000
Cons ci ratio: 1.450070e-01	ci left: 3.268875e-02	ci right 3.784751e-02	k: 704	n:20000
KS ci ratio: 3.161622e-02	ci left: 4.276650e-01	ci right 4.414540e-01	k: 8691	n:20000
A2M   20000 perm   5 sec   (3775 perm/sec)   p_kst 4.345500e-01   p_cons 3.520000e-02   p_joint 1.617500e-01

Joint ci ratio: 6.099889e-02	ci left: 1.172969e-01	ci right 1.247100e-01	k: 3629	n:30000
Cons ci ratio: 1.266724e-01	ci left: 2.897069e-02	ci right 3.292083e-02	k: 927	n:30000
KS ci ratio: 2.566788e-02	ci left: 4.317429e-01	ci right 4.430025e-01	k: 13121	n:30000
A2M   30000 perm   8 sec   (3640 perm/sec)   p_kst 4.373667e-01   p_cons 3.090000e-02   p_joint 1.209667e-01

Joint ci ratio: 5.665914e-02	ci left: 1.038387e-01	ci right 1.099185e-01	k: 4274	n:40000
Cons ci ratio: 1.110205e-01	ci left: 2.854456e-02	ci right 3.192409e-02	k: 1208	n:40000
KS ci ratio: 2.231387e-02	ci left: 4.306334e-01	ci right 4.403760e-01	k: 17420	n:40000
A2M   40000 perm   11 sec   (3548 perm/sec)   p_kst 4.355000e-01   p_cons 3.020000e-02   p_joint 1.068500e-01

Joint ci ratio: 4.920412e-02	ci left: 1.098616e-01	ci right 1.154234e-01	k: 5631	n:50000
Cons ci ratio: 9.917321e-02	ci left: 2.879534e-02	ci right 3.181952e-02	k: 1514	n:50000
KS ci ratio: 1.988218e-02	ci left: 4.330256e-01	ci right 4.417416e-01	k: 21869	n:50000
A2M   50000 perm   14 sec   (3507 perm/sec)   p_kst 4.373800e-01   p_cons 3.028000e-02   p_joint 1.126200e-01

Outputting figure to mutsig2_images.part000000000001/A2M.11_4569_50000_0.43738_0.03028_0.11262.png
                gene_name: A2M
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 15 percent done.
ABCB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.101236e-02	ci left: 6.053805e-01	ci right 6.245524e-01	k: 6150	n:10000
KS ci ratio: 1.400872e-02	ci left: 8.804271e-01	ci right 8.929466e-01	k: 8868	n:10000
ABCB1   10000 perm   2 sec   (4643 perm/sec)   p_kst 8.868000e-01   p_cons 6.150000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABCB1.11_3951_10000_0.8868_0.615_1.png
                gene_name: ABCB1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
ABCB11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.153911e-02	ci left: 7.597007e-01	ci right 7.763429e-01	k: 7681	n:10000
Cons ci ratio: 4.844356e-02	ci left: 3.859978e-01	ci right 4.052631e-01	k: 3956	n:10000
KS ci ratio: 2.721712e-02	ci left: 6.654179e-01	ci right 6.838802e-01	k: 6747	n:10000
ABCB11   10000 perm   2 sec   (4206 perm/sec)   p_kst 6.747000e-01   p_cons 3.956000e-01   p_joint 7.681000e-01

Outputting figure to mutsig2_images.part000000000001/ABCB11.11_4074_10000_0.6747_0.3956_0.7681.png
                gene_name: ABCB11
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 18 percent done.
ABCB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.679345e-02	ci left: 1.987011e-01	ci right 2.146701e-01	k: 2066	n:10000
Cons ci ratio: 4.342625e-02	ci left: 4.391176e-01	ci right 4.587122e-01	k: 4489	n:10000
KS ci ratio: 1.037097e-01	ci left: 1.184802e-01	ci right 1.315391e-01	k: 1249	n:10000
ABCB4   10000 perm   2 sec   (4606 perm/sec)   p_kst 1.249000e-01   p_cons 4.489000e-01   p_joint 2.066000e-01

Joint ci ratio: 5.171739e-02	ci left: 2.173457e-01	ci right 2.289349e-01	k: 4462	n:20000
Cons ci ratio: 3.069411e-02	ci left: 4.422392e-01	ci right 4.560756e-01	k: 8983	n:20000
KS ci ratio: 7.285306e-02	ci left: 1.218242e-01	ci right 1.310847e-01	k: 2528	n:20000
ABCB4   20000 perm   5 sec   (4183 perm/sec)   p_kst 1.264000e-01   p_cons 4.491500e-01   p_joint 2.231000e-01

Outputting figure to mutsig2_images.part000000000001/ABCB4.11_3969_20000_0.1264_0.44915_0.2231.png
                gene_name: ABCB4
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 19 percent done.
ABCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.926472e-02	ci left: 4.892517e-01	ci right 5.089489e-01	k: 4991	n:10000
Cons ci ratio: 5.532926e-02	ci left: 3.248548e-01	ci right 3.434420e-01	k: 3341	n:10000
KS ci ratio: 4.697642e-02	ci left: 4.007361e-01	ci right 4.201161e-01	k: 4104	n:10000
ABCC1   10000 perm   2 sec   (4294 perm/sec)   p_kst 4.104000e-01   p_cons 3.341000e-01   p_joint 4.991000e-01

Outputting figure to mutsig2_images.part000000000001/ABCC1.11_4720_10000_0.4104_0.3341_0.4991.png
                gene_name: ABCC1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 20 percent done.
ABCC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.995174e-02	ci left: 1.265977e-01	ci right 1.400167e-01	k: 1332	n:10000
Cons ci ratio: 8.049148e-02	ci left: 1.839270e-01	ci right 1.994530e-01	k: 1916	n:10000
KS ci ratio: 1.072191e-01	ci left: 1.115436e-01	ci right 1.242799e-01	k: 1178	n:10000
ABCC11   10000 perm   2 sec   (4538 perm/sec)   p_kst 1.178000e-01   p_cons 1.916000e-01   p_joint 1.332000e-01

Joint ci ratio: 7.254146e-02	ci left: 1.227593e-01	ci right 1.320493e-01	k: 2547	n:20000
Cons ci ratio: 5.660650e-02	ci left: 1.878966e-01	ci right 1.988927e-01	k: 3867	n:20000
KS ci ratio: 8.081697e-02	ci left: 1.009805e-01	ci right 1.095346e-01	k: 2104	n:20000
ABCC11   20000 perm   5 sec   (3766 perm/sec)   p_kst 1.052000e-01   p_cons 1.933500e-01   p_joint 1.273500e-01

Outputting figure to mutsig2_images.part000000000001/ABCC11.11_4265_20000_0.1052_0.19335_0.12735.png
                gene_name: ABCC11
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 22 percent done.
ABCC12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.069893e-02	ci left: 6.102019e-01	ci right 6.293283e-01	k: 6198	n:10000
KS ci ratio: 1.308502e-02	ci left: 8.937479e-01	ci right 9.056181e-01	k: 8998	n:10000
ABCC12   10000 perm   2 sec   (4381 perm/sec)   p_kst 8.998000e-01   p_cons 6.198000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABCC12.11_4196_10000_0.8998_0.6198_1.png
                gene_name: ABCC12
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
ABCC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.193667e-02	ci left: 2.770574e-01	ci right 2.948674e-01	k: 2859	n:10000
Cons ci ratio: 2.808936e-02	ci left: 6.513244e-01	ci right 6.699820e-01	k: 6607	n:10000
KS ci ratio: 1.024951e-01	ci left: 1.210221e-01	ci right 1.341957e-01	k: 1275	n:10000
ABCC9   10000 perm   2 sec   (4323 perm/sec)   p_kst 1.275000e-01   p_cons 6.607000e-01   p_joint 2.859000e-01

Joint ci ratio: 4.062089e-02	ci left: 3.111996e-01	ci right 3.241534e-01	k: 6353	n:20000
Cons ci ratio: 1.929433e-02	ci left: 6.670517e-01	ci right 6.800978e-01	k: 13472	n:20000
KS ci ratio: 7.581674e-02	ci left: 1.134122e-01	ci right 1.223992e-01	k: 2357	n:20000
ABCC9   20000 perm   5 sec   (3940 perm/sec)   p_kst 1.178500e-01   p_cons 6.736000e-01   p_joint 3.176500e-01

Outputting figure to mutsig2_images.part000000000001/ABCC9.11_4944_20000_0.11785_0.6736_0.31765.png
                gene_name: ABCC9
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 24 percent done.
ABCA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.359396e-02	ci left: 8.864693e-01	ci right 8.987010e-01	k: 8927	n:10000
KS ci ratio: 1.166602e-02	ci left: 9.131707e-01	ci right 9.239840e-01	k: 9187	n:10000
ABCA10   10000 perm   3 sec   (3483 perm/sec)   p_kst 9.187000e-01   p_cons 8.927000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABCA10.10_4780_10000_0.9187_0.8927_1.png
                gene_name: ABCA10
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
A2ML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.014148e-02	ci left: 6.188425e-01	ci right 6.378826e-01	k: 6284	n:10000
Cons ci ratio: 6.613156e-02	ci left: 2.513249e-01	ci right 2.686151e-01	k: 2599	n:10000
KS ci ratio: 2.332572e-02	ci left: 7.297682e-01	ci right 7.470927e-01	k: 7385	n:10000
A2ML1   10000 perm   2 sec   (4724 perm/sec)   p_kst 7.385000e-01   p_cons 2.599000e-01   p_joint 6.284000e-01

Outputting figure to mutsig2_images.part000000000001/A2ML1.9_4505_10000_0.7385_0.2599_0.6284.png
                gene_name: A2ML1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 27 percent done.
AASS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.927630e-02	ci left: 6.324129e-01	ci right 6.513044e-01	k: 6419	n:10000
Cons ci ratio: 5.005077e-02	ci left: 3.705722e-01	ci right 3.896977e-01	k: 3801	n:10000
KS ci ratio: 2.094610e-02	ci left: 7.696229e-01	ci right 7.860149e-01	k: 7779	n:10000
AASS   10000 perm   2 sec   (4391 perm/sec)   p_kst 7.779000e-01   p_cons 3.801000e-01   p_joint 6.419000e-01

Outputting figure to mutsig2_images.part000000000001/AASS.9_2873_10000_0.7779_0.3801_0.6419.png
                gene_name: AASS
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 28 percent done.
ABCC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.269027e-01	ci left: 8.154699e-02	ci right 9.269490e-02	k: 870	n:10000
Cons ci ratio: 4.278265e-02	ci left: 4.465016e-01	ci right 4.661239e-01	k: 4563	n:10000
KS ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
ABCC4   10000 perm   2 sec   (4490 perm/sec)   p_kst 4.100000e-02   p_cons 4.563000e-01   p_joint 8.700000e-02

Joint ci ratio: 8.077409e-02	ci left: 1.010787e-01	ci right 1.096364e-01	k: 2106	n:20000
Cons ci ratio: 3.073445e-02	ci left: 4.415902e-01	ci right 4.554247e-01	k: 8970	n:20000
KS ci ratio: 1.356132e-01	ci left: 3.737462e-02	ci right 4.286011e-02	k: 801	n:20000
ABCC4   20000 perm   5 sec   (4136 perm/sec)   p_kst 4.005000e-02   p_cons 4.485000e-01   p_joint 1.053000e-01

Joint ci ratio: 7.811858e-02	ci left: 7.440048e-02	ci right 8.048165e-02	k: 2322	n:30000
Cons ci ratio: 2.439528e-02	ci left: 4.568785e-01	ci right 4.681954e-01	k: 13876	n:30000
KS ci ratio: 1.115522e-01	ci left: 3.732391e-02	ci right 4.176583e-02	k: 1185	n:30000
ABCC4   30000 perm   8 sec   (3916 perm/sec)   p_kst 3.950000e-02   p_cons 4.625333e-01   p_joint 7.740000e-02

Joint ci ratio: 7.661490e-02	ci left: 5.906683e-02	ci right 6.379708e-02	k: 2456	n:40000
Cons ci ratio: 2.108831e-02	ci left: 4.585535e-01	ci right 4.683518e-01	k: 18538	n:40000
KS ci ratio: 9.814697e-02	ci left: 3.646471e-02	ci right 4.025268e-02	k: 1533	n:40000
ABCC4   40000 perm   11 sec   (3779 perm/sec)   p_kst 3.832500e-02   p_cons 4.634500e-01   p_joint 6.140000e-02

Outputting figure to mutsig2_images.part000000000001/ABCC4.9_4151_40000_0.038325_0.46345_0.0614.png
                gene_name: ABCC4
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.064 

Current progress: 30 percent done.
ABCD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.777008e-02	ci left: 5.086527e-01	ci right 5.283365e-01	k: 5185	n:10000
Cons ci ratio: 4.963916e-02	ci left: 3.744525e-01	ci right 3.936151e-01	k: 3840	n:10000
KS ci ratio: 5.226699e-02	ci left: 3.504847e-01	ci right 3.693970e-01	k: 3599	n:10000
ABCD2   10000 perm   2 sec   (5771 perm/sec)   p_kst 3.599000e-01   p_cons 3.840000e-01   p_joint 5.185000e-01

Outputting figure to mutsig2_images.part000000000001/ABCD2.9_2263_10000_0.3599_0.384_0.5185.png
                gene_name: ABCD2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 31 percent done.
ABCG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.390573e-02	ci left: 7.200716e-01	ci right 7.375949e-01	k: 7289	n:10000
Cons ci ratio: 5.540393e-02	ci left: 3.242591e-01	ci right 3.428380e-01	k: 3335	n:10000
KS ci ratio: 1.330145e-02	ci left: 8.906714e-01	ci right 9.026964e-01	k: 8968	n:10000
ABCG2   10000 perm   2 sec   (5087 perm/sec)   p_kst 8.968000e-01   p_cons 3.335000e-01   p_joint 7.289000e-01

Outputting figure to mutsig2_images.part000000000001/ABCG2.9_2028_10000_0.8968_0.3335_0.7289.png
                gene_name: ABCG2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 32 percent done.
ABCC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.191911e-01	ci left: 9.175384e-02	ci right 1.034818e-01	k: 975	n:10000
Cons ci ratio: 3.518185e-02	ci left: 5.439926e-01	ci right 5.635761e-01	k: 5538	n:10000
KS ci ratio: 1.603324e-01	ci left: 5.186203e-02	ci right 6.099852e-02	k: 563	n:10000
ABCC8   10000 perm   2 sec   (4349 perm/sec)   p_kst 5.630000e-02   p_cons 5.538000e-01   p_joint 9.750000e-02

Joint ci ratio: 6.041313e-02	ci left: 1.686204e-01	ci right 1.791746e-01	k: 3477	n:20000
Cons ci ratio: 2.506571e-02	ci left: 5.431735e-01	ci right 5.570119e-01	k: 11002	n:20000
KS ci ratio: 1.131622e-01	ci left: 5.338848e-02	ci right 5.984119e-02	k: 1131	n:20000
ABCC8   20000 perm   5 sec   (3995 perm/sec)   p_kst 5.655000e-02   p_cons 5.501000e-01   p_joint 1.738500e-01

Joint ci ratio: 5.443801e-02	ci left: 1.433402e-01	ci right 1.513949e-01	k: 4420	n:30000
Cons ci ratio: 2.061163e-02	ci left: 5.409457e-01	ci right 5.522452e-01	k: 16398	n:30000
KS ci ratio: 9.109640e-02	ci left: 5.547908e-02	ci right 6.080689e-02	k: 1743	n:30000
ABCC8   30000 perm   8 sec   (3844 perm/sec)   p_kst 5.810000e-02   p_cons 5.466000e-01   p_joint 1.473333e-01

Outputting figure to mutsig2_images.part000000000001/ABCC8.8_4902_30000_0.0581_0.5466_0.14733.png
                gene_name: ABCC8
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 34 percent done.
ABCC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.954562e-02	ci left: 7.929363e-01	ci right 8.086881e-01	k: 8009	n:10000
KS ci ratio: 1.999794e-02	ci left: 7.854313e-01	ci right 8.013975e-01	k: 7935	n:10000
ABCC10   10000 perm   2 sec   (4601 perm/sec)   p_kst 7.935000e-01   p_cons 8.009000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABCC10.7_4475_10000_0.7935_0.8009_1.png
                gene_name: ABCC10
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
ABCC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.572947e-02	ci left: 3.216780e-01	ci right 3.402206e-01	k: 3309	n:10000
Cons ci ratio: 2.735981e-02	ci left: 6.631019e-01	ci right 6.815976e-01	k: 6724	n:10000
KS ci ratio: 7.468054e-02	ci left: 2.078695e-01	ci right 2.240963e-01	k: 2159	n:10000
ABCC5   10000 perm   2 sec   (4301 perm/sec)   p_kst 2.159000e-01   p_cons 6.724000e-01   p_joint 3.309000e-01

Outputting figure to mutsig2_images.part000000000001/ABCC5.7_4470_10000_0.2159_0.6724_0.3309.png
                gene_name: ABCC5
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 36 percent done.
ABCC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.230306e-02	ci left: 4.520910e-01	ci right 4.717312e-01	k: 4619	n:10000
Cons ci ratio: 4.954487e-02	ci left: 3.753480e-01	ci right 3.945190e-01	k: 3849	n:10000
KS ci ratio: 5.265484e-02	ci left: 3.471054e-01	ci right 3.659783e-01	k: 3565	n:10000
ABCC6   10000 perm   2 sec   (4442 perm/sec)   p_kst 3.565000e-01   p_cons 3.849000e-01   p_joint 4.619000e-01

Outputting figure to mutsig2_images.part000000000001/ABCC6.7_4717_10000_0.3565_0.3849_0.4619.png
                gene_name: ABCC6
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 38 percent done.
A1CF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.594957e-02	ci left: 8.510045e-01	ci right 8.647863e-01	k: 8580	n:10000
Cons ci ratio: 3.671421e-03	ci left: 9.893898e-01	ci right 9.931155e-01	k: 9914	n:10000
KS ci ratio: 3.056883e-02	ci left: 6.122110e-01	ci right 6.313180e-01	k: 6218	n:10000
A1CF   10000 perm   2 sec   (4985 perm/sec)   p_kst 6.218000e-01   p_cons 9.914000e-01   p_joint 8.580000e-01

Outputting figure to mutsig2_images.part000000000001/A1CF.6_1956_10000_0.6218_0.9914_0.858.png
                gene_name: A1CF
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 39 percent done.
AARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.094230e-02	ci left: 2.255330e-01	ci right 2.422223e-01	k: 2338	n:10000
Cons ci ratio: 2.675337e-02	ci left: 6.729719e-01	ci right 6.913219e-01	k: 6822	n:10000
KS ci ratio: 9.117616e-02	ci left: 1.488410e-01	ci right 1.631600e-01	k: 1559	n:10000
AARS2   10000 perm   2 sec   (5126 perm/sec)   p_kst 1.559000e-01   p_cons 6.822000e-01   p_joint 2.338000e-01

Outputting figure to mutsig2_images.part000000000001/AARS2.6_3046_10000_0.1559_0.6822_0.2338.png
                gene_name: AARS2
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 41 percent done.
ABCA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.405162e-01	ci left: 6.710566e-02	ci right 7.734523e-02	k: 721	n:10000
Cons ci ratio: 7.200770e-02	ci left: 2.203008e-01	ci right 2.368576e-01	k: 2285	n:10000
KS ci ratio: 2.344190e-01	ci left: 2.400584e-02	ci right 3.047352e-02	k: 271	n:10000
ABCA3   10000 perm   2 sec   (4376 perm/sec)   p_kst 2.710000e-02   p_cons 2.285000e-01   p_joint 7.210000e-02

Joint ci ratio: 1.137492e-01	ci left: 5.285323e-02	ci right 5.927660e-02	k: 1120	n:20000
Cons ci ratio: 5.026244e-02	ci left: 2.273040e-01	ci right 2.390737e-01	k: 4663	n:20000
KS ci ratio: 1.649854e-01	ci left: 2.518148e-02	ci right 2.975729e-02	k: 548	n:20000
ABCA3   20000 perm   5 sec   (4093 perm/sec)   p_kst 2.740000e-02   p_cons 2.331500e-01   p_joint 5.600000e-02

Joint ci ratio: 9.414350e-02	ci left: 5.205562e-02	ci right 5.723105e-02	k: 1638	n:30000
Cons ci ratio: 4.123142e-02	ci left: 2.267366e-01	ci right 2.363155e-01	k: 6945	n:30000
KS ci ratio: 1.338363e-01	ci left: 2.593660e-02	ci right 2.968892e-02	k: 833	n:30000
ABCA3   30000 perm   8 sec   (3700 perm/sec)   p_kst 2.776667e-02   p_cons 2.315000e-01   p_joint 5.460000e-02

Joint ci ratio: 8.688362e-02	ci left: 4.631721e-02	ci right 5.054866e-02	k: 1936	n:40000
Cons ci ratio: 3.580143e-02	ci left: 2.264545e-01	ci right 2.347347e-01	k: 9223	n:40000
KS ci ratio: 1.147438e-01	ci left: 2.672103e-02	ci right 2.999792e-02	k: 1133	n:40000
ABCA3   40000 perm   11 sec   (3614 perm/sec)   p_kst 2.832500e-02   p_cons 2.305750e-01   p_joint 4.840000e-02

Joint ci ratio: 9.726944e-02	ci left: 2.992769e-02	ci right 3.300703e-02	k: 1572	n:50000
Cons ci ratio: 3.096022e-02	ci left: 2.390069e-01	ci right 2.465430e-01	k: 12138	n:50000
KS ci ratio: 1.023889e-01	ci left: 2.701992e-02	ci right 2.995517e-02	k: 1423	n:50000
ABCA3   50000 perm   14 sec   (3579 perm/sec)   p_kst 2.846000e-02   p_cons 2.427600e-01   p_joint 3.144000e-02

Joint ci ratio: 1.034983e-01	ci left: 2.214019e-02	ci right 2.457288e-02	k: 1400	n:60000
Cons ci ratio: 2.979624e-02	ci left: 2.205364e-01	ci right 2.272236e-01	k: 13432	n:60000
KS ci ratio: 9.323798e-02	ci left: 2.728082e-02	ci right 2.996504e-02	k: 1716	n:60000
ABCA3   60000 perm   17 sec   (3533 perm/sec)   p_kst 2.860000e-02   p_cons 2.238667e-01   p_joint 2.333333e-02

Joint ci ratio: 6.892131e-02	ci left: 4.264700e-02	ci right 4.570522e-02	k: 3091	n:70000
Cons ci ratio: 2.657478e-02	ci left: 2.339674e-01	ci right 2.402830e-01	k: 16598	n:70000
KS ci ratio: 8.311234e-02	ci left: 2.951842e-02	ci right 3.209209e-02	k: 2155	n:70000
ABCA3   70000 perm   20 sec   (3512 perm/sec)   p_kst 3.078571e-02   p_cons 2.371143e-01   p_joint 4.415714e-02

Outputting figure to mutsig2_images.part000000000001/ABCA3.6_5235_70000_0.030786_0.23711_0.044157.png
                gene_name: ABCA3
               theta_stop: 0.083 
                    nperm: 70000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 42 percent done.
ABCG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.831909e-02	ci left: 3.020326e-01	ci right 3.202776e-01	k: 3111	n:10000
Cons ci ratio: 5.853744e-02	ci left: 3.004459e-01	ci right 3.186652e-01	k: 3095	n:10000
KS ci ratio: 6.186093e-02	ci left: 2.775527e-01	ci right 2.953719e-01	k: 2864	n:10000
ABCG1   10000 perm   2 sec   (5509 perm/sec)   p_kst 2.864000e-01   p_cons 3.095000e-01   p_joint 3.111000e-01

Outputting figure to mutsig2_images.part000000000001/ABCG1.6_2265_10000_0.2864_0.3095_0.3111.png
                gene_name: ABCG1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 43 percent done.
AARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.339994e-02	ci left: 4.394169e-01	ci right 4.590127e-01	k: 4492	n:10000
Cons ci ratio: 2.634093e-02	ci left: 6.797224e-01	ci right 6.979674e-01	k: 6889	n:10000
KS ci ratio: 5.837354e-02	ci left: 3.016359e-01	ci right 3.198745e-01	k: 3107	n:10000
AARS   10000 perm   2 sec   (5553 perm/sec)   p_kst 3.107000e-01   p_cons 6.889000e-01   p_joint 4.492000e-01

Outputting figure to mutsig2_images.part000000000001/AARS.5_2987_10000_0.3107_0.6889_0.4492.png
                gene_name: AARS
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 45 percent done.
ABAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.198041e-01	ci left: 9.087811e-02	ci right 1.025580e-01	k: 966	n:10000
Cons ci ratio: 8.643025e-02	ci left: 1.631759e-01	ci right 1.780165e-01	k: 1705	n:10000
KS ci ratio: 1.272230e-01	ci left: 8.115862e-02	ci right 9.228352e-02	k: 866	n:10000
ABAT   10000 perm   2 sec   (5757 perm/sec)   p_kst 8.660000e-02   p_cons 1.705000e-01   p_joint 9.660000e-02

Joint ci ratio: 7.794982e-02	ci left: 1.078575e-01	ci right 1.166556e-01	k: 2244	n:20000
Cons ci ratio: 6.048682e-02	ci left: 1.682746e-01	ci right 1.788205e-01	k: 3470	n:20000
KS ci ratio: 8.951065e-02	ci left: 8.357009e-02	ci right 9.145032e-02	k: 1749	n:20000
ABAT   20000 perm   4 sec   (5169 perm/sec)   p_kst 8.745000e-02   p_cons 1.735000e-01   p_joint 1.122000e-01

Outputting figure to mutsig2_images.part000000000001/ABAT.5_1563_20000_0.08745_0.1735_0.1122.png
                gene_name: ABAT
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 46 percent done.
ABCA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.535527e-02	ci left: 4.177760e-01	ci right 4.372662e-01	k: 4275	n:10000
Cons ci ratio: 7.534834e-02	ci left: 2.049112e-01	ci right 2.210563e-01	k: 2129	n:10000
KS ci ratio: 3.677630e-02	ci left: 5.219620e-01	ci right 5.416195e-01	k: 5318	n:10000
ABCA7   10000 perm   2 sec   (4229 perm/sec)   p_kst 5.318000e-01   p_cons 2.129000e-01   p_joint 4.275000e-01

Outputting figure to mutsig2_images.part000000000001/ABCA7.5_6625_10000_0.5318_0.2129_0.4275.png
                gene_name: ABCA7
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 47 percent done.
ABCB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.875620e-02	ci left: 6.406595e-01	ci right 6.594530e-01	k: 6501	n:10000
Cons ci ratio: 2.507590e-02	ci left: 7.005927e-01	ci right 7.184851e-01	k: 7096	n:10000
KS ci ratio: 3.540304e-02	ci left: 5.408871e-01	ci right 5.604833e-01	k: 5507	n:10000
ABCB8   10000 perm   2 sec   (6216 perm/sec)   p_kst 5.507000e-01   p_cons 7.096000e-01   p_joint 6.501000e-01

Outputting figure to mutsig2_images.part000000000001/ABCB8.5_2221_10000_0.5507_0.7096_0.6501.png
                gene_name: ABCB8
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 49 percent done.
ABCC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.197341e-02	ci left: 3.530692e-01	ci right 3.720109e-01	k: 3625	n:10000
Cons ci ratio: 6.054087e-02	ci left: 2.863697e-01	ci right 3.043496e-01	k: 2953	n:10000
KS ci ratio: 5.443389e-02	ci left: 3.321036e-01	ci right 3.507889e-01	k: 3414	n:10000
ABCC3   10000 perm   2 sec   (5245 perm/sec)   p_kst 3.414000e-01   p_cons 2.953000e-01   p_joint 3.625000e-01

Outputting figure to mutsig2_images.part000000000001/ABCC3.5_4792_10000_0.3414_0.2953_0.3625.png
                gene_name: ABCC3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 50 percent done.
ABCD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.834631e-02	ci left: 3.018342e-01	ci right 3.200760e-01	k: 3109	n:10000
Cons ci ratio: 3.847961e-02	ci left: 4.993504e-01	ci right 5.190443e-01	k: 5092	n:10000
KS ci ratio: 8.522827e-02	ci left: 1.671068e-01	ci right 1.820833e-01	k: 1745	n:10000
ABCD4   10000 perm   2 sec   (5727 perm/sec)   p_kst 1.745000e-01   p_cons 5.092000e-01   p_joint 3.109000e-01

Outputting figure to mutsig2_images.part000000000001/ABCD4.5_1897_10000_0.1745_0.5092_0.3109.png
                gene_name: ABCD4
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 51 percent done.
A4GNT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.451283e-02	ci left: 8.729587e-01	ci right 8.858194e-01	k: 8795	n:10000
KS ci ratio: 2.582604e-02	ci left: 6.881889e-01	ci right 7.062961e-01	k: 6973	n:10000
A4GNT   10000 perm   2 sec   (6008 perm/sec)   p_kst 6.973000e-01   p_cons 8.795000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/A4GNT.4_1031_10000_0.6973_0.8795_1.png
                gene_name: A4GNT
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
AACS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.386340e-02	ci left: 7.207785e-01	ci right 7.382876e-01	k: 7296	n:10000
Cons ci ratio: 8.236279e-03	ci left: 9.536741e-01	ci right 9.616565e-01	k: 9578	n:10000
KS ci ratio: 3.259983e-02	ci left: 5.813888e-01	ci right 6.007581e-01	k: 5911	n:10000
AACS   10000 perm   2 sec   (5645 perm/sec)   p_kst 5.911000e-01   p_cons 9.578000e-01   p_joint 7.296000e-01

Outputting figure to mutsig2_images.part000000000001/AACS.4_2091_10000_0.5911_0.9578_0.7296.png
                gene_name: AACS
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 54 percent done.
AADACL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.409325e-02	ci left: 7.169415e-01	ci right 7.345268e-01	k: 7258	n:10000
Cons ci ratio: 1.750290e-02	ci left: 8.263569e-01	ci right 8.410482e-01	k: 8338	n:10000
KS ci ratio: 5.290821e-02	ci left: 3.449190e-01	ci right 3.637659e-01	k: 3543	n:10000
AADACL2   10000 perm   1 sec   (6879 perm/sec)   p_kst 3.543000e-01   p_cons 8.338000e-01   p_joint 7.258000e-01

Outputting figure to mutsig2_images.part000000000001/AADACL2.4_1226_10000_0.3543_0.8338_0.7258.png
                gene_name: AADACL2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 55 percent done.
AADACL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.967418e-02	ci left: 7.908060e-01	ci right 8.066196e-01	k: 7988	n:10000
Cons ci ratio: 2.284895e-02	ci left: 7.377518e-01	ci right 7.549045e-01	k: 7464	n:10000
KS ci ratio: 4.210789e-02	ci left: 4.543870e-01	ci right 4.740339e-01	k: 4642	n:10000
AADACL4   10000 perm   2 sec   (6293 perm/sec)   p_kst 4.642000e-01   p_cons 7.464000e-01   p_joint 7.988000e-01

Outputting figure to mutsig2_images.part000000000001/AADACL4.4_1240_10000_0.4642_0.7464_0.7988.png
                gene_name: AADACL4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 57 percent done.
AASDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.678422e-02	ci left: 6.724682e-01	ci right 6.908258e-01	k: 6817	n:10000
KS ci ratio: 1.575280e-02	ci left: 8.540644e-01	ci right 8.677246e-01	k: 8610	n:10000
AASDH   10000 perm   2 sec   (4763 perm/sec)   p_kst 8.610000e-01   p_cons 6.817000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/AASDH.4_3353_10000_0.861_0.6817_1.png
                gene_name: AASDH
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
ABCB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.269812e-02	ci left: 7.402790e-01	ci right 7.573759e-01	k: 7489	n:10000
Cons ci ratio: 3.888965e-02	ci left: 4.940505e-01	ci right 5.137472e-01	k: 5039	n:10000
KS ci ratio: 4.954487e-02	ci left: 3.753480e-01	ci right 3.945190e-01	k: 3849	n:10000
ABCB6   10000 perm   2 sec   (5766 perm/sec)   p_kst 3.849000e-01   p_cons 5.039000e-01   p_joint 7.489000e-01

Outputting figure to mutsig2_images.part000000000001/ABCB6.4_2605_10000_0.3849_0.5039_0.7489.png
                gene_name: ABCB6
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 59 percent done.
ABCB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.443389e-02	ci left: 3.321036e-01	ci right 3.507889e-01	k: 3414	n:10000
Cons ci ratio: 5.642880e-02	ci left: 3.162190e-01	ci right 3.346828e-01	k: 3254	n:10000
KS ci ratio: 8.814885e-02	ci left: 1.577733e-01	ci right 1.724223e-01	k: 1650	n:10000
ABCB7   10000 perm   2 sec   (5533 perm/sec)   p_kst 1.650000e-01   p_cons 3.254000e-01   p_joint 3.414000e-01

Outputting figure to mutsig2_images.part000000000001/ABCB7.4_2326_10000_0.165_0.3254_0.3414.png
                gene_name: ABCB7
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 61 percent done.
ABCG8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.060037e-02	ci left: 7.753971e-01	ci right 7.916375e-01	k: 7836	n:10000
Cons ci ratio: 3.993788e-02	ci left: 4.807559e-01	ci right 5.004496e-01	k: 4906	n:10000
KS ci ratio: 1.962522e-02	ci left: 7.916175e-01	ci right 8.074076e-01	k: 7996	n:10000
ABCG8   10000 perm   2 sec   (5658 perm/sec)   p_kst 7.996000e-01   p_cons 4.906000e-01   p_joint 7.836000e-01

Outputting figure to mutsig2_images.part000000000001/ABCG8.4_2074_10000_0.7996_0.4906_0.7836.png
                gene_name: ABCG8
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 62 percent done.
ABHD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.309272e-02	ci left: 1.435445e-01	ci right 1.576597e-01	k: 1505	n:10000
Cons ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
KS ci ratio: 3.857979e-02	ci left: 4.980503e-01	ci right 5.177451e-01	k: 5079	n:10000
ABHD2   10000 perm   2 sec   (5895 perm/sec)   p_kst 5.079000e-01   p_cons 1.160000e-02   p_joint 1.505000e-01

Joint ci ratio: 8.242343e-02	ci left: 9.739693e-02	ci right 1.058193e-01	k: 2031	n:20000
Cons ci ratio: 2.293135e-01	ci left: 1.274765e-02	ci right 1.609571e-02	k: 287	n:20000
KS ci ratio: 2.708084e-02	ci left: 5.046461e-01	ci right 5.185505e-01	k: 10232	n:20000
ABHD2   20000 perm   4 sec   (5261 perm/sec)   p_kst 5.116000e-01   p_cons 1.435000e-02   p_joint 1.015500e-01

Joint ci ratio: 7.049668e-02	ci left: 9.012999e-02	ci right 9.674899e-02	k: 2802	n:30000
Cons ci ratio: 1.881208e-01	ci left: 1.292349e-02	ci right 1.563844e-02	k: 427	n:30000
KS ci ratio: 2.157397e-02	ci left: 5.182298e-01	ci right 5.295656e-01	k: 15717	n:30000
ABHD2   30000 perm   6 sec   (5043 perm/sec)   p_kst 5.239000e-01   p_cons 1.423333e-02   p_joint 9.340000e-02

Joint ci ratio: 6.230439e-02	ci left: 8.723745e-02	ci right 9.287223e-02	k: 3601	n:40000
Cons ci ratio: 1.627253e-01	ci left: 1.313539e-02	ci right 1.548590e-02	k: 571	n:40000
KS ci ratio: 1.864080e-02	ci left: 5.201421e-01	ci right 5.299543e-01	k: 21002	n:40000
ABHD2   40000 perm   8 sec   (4884 perm/sec)   p_kst 5.250500e-01   p_cons 1.427500e-02   p_joint 9.002500e-02

Joint ci ratio: 6.809358e-02	ci left: 6.003946e-02	ci right 6.429155e-02	k: 3107	n:50000
Cons ci ratio: 1.597437e-01	ci left: 1.094874e-02	ci right 1.286855e-02	k: 594	n:50000
KS ci ratio: 1.665324e-02	ci left: 5.212518e-01	ci right 5.300253e-01	k: 26282	n:50000
ABHD2   50000 perm   11 sec   (4761 perm/sec)   p_kst 5.256400e-01   p_cons 1.188000e-02   p_joint 6.214000e-02

Joint ci ratio: 6.947650e-02	ci left: 4.863018e-02	ci right 5.214681e-02	k: 3022	n:60000
Cons ci ratio: 1.456194e-01	ci left: 1.106375e-02	ci right 1.281727e-02	k: 715	n:60000
KS ci ratio: 1.521473e-02	ci left: 5.212282e-01	ci right 5.292360e-01	k: 31514	n:60000
ABHD2   60000 perm   13 sec   (4649 perm/sec)   p_kst 5.252333e-01   p_cons 1.191667e-02   p_joint 5.036667e-02

Joint ci ratio: 6.820891e-02	ci left: 4.351820e-02	ci right 4.660537e-02	k: 3153	n:70000
Cons ci ratio: 1.344379e-01	ci left: 1.119271e-02	ci right 1.281955e-02	k: 839	n:70000
KS ci ratio: 1.410566e-02	ci left: 5.208352e-01	ci right 5.282484e-01	k: 36718	n:70000
ABHD2   70000 perm   15 sec   (4561 perm/sec)   p_kst 5.245429e-01   p_cons 1.198571e-02   p_joint 4.504286e-02

Joint ci ratio: 5.997033e-02	ci left: 4.917751e-02	ci right 5.223017e-02	k: 4055	n:80000
Cons ci ratio: 1.254251e-01	ci left: 1.130541e-02	ci right 1.283028e-02	k: 964	n:80000
KS ci ratio: 1.316608e-02	ci left: 5.221577e-01	ci right 5.290905e-01	k: 42050	n:80000
ABHD2   80000 perm   18 sec   (4476 perm/sec)   p_kst 5.256250e-01   p_cons 1.205000e-02   p_joint 5.068750e-02

Joint ci ratio: 5.656019e-02	ci left: 4.923181e-02	ci right 5.210835e-02	k: 4559	n:90000
Cons ci ratio: 1.183970e-01	ci left: 1.132041e-02	ci right 1.275575e-02	k: 1082	n:90000
KS ci ratio: 1.242702e-02	ci left: 5.217978e-01	ci right 5.283339e-01	k: 47256	n:90000
ABHD2   90000 perm   20 sec   (4396 perm/sec)   p_kst 5.250667e-01   p_cons 1.202222e-02   p_joint 5.065556e-02

Joint ci ratio: 4.558356e-02	ci left: 6.728821e-02	ci right 7.043686e-02	k: 6885	n:100000
Cons ci ratio: 1.121955e-01	ci left: 1.138293e-02	ci right 1.274559e-02	k: 1205	n:100000
KS ci ratio: 1.178122e-02	ci left: 5.223093e-01	ci right 5.285092e-01	k: 52541	n:100000
ABHD2   100000 perm   23 sec   (4325 perm/sec)   p_kst 5.254100e-01   p_cons 1.205000e-02   p_joint 6.885000e-02

Joint ci ratio: 4.843921e-02	ci left: 5.482819e-02	ci right 5.755891e-02	k: 6180	n:110000
Cons ci ratio: 1.070397e-01	ci left: 1.140029e-02	ci right 1.269836e-02	k: 1324	n:110000
KS ci ratio: 1.123585e-02	ci left: 5.223257e-01	ci right 5.282366e-01	k: 57781	n:110000
ABHD2   110000 perm   26 sec   (4256 perm/sec)   p_kst 5.252818e-01   p_cons 1.203636e-02   p_joint 5.618182e-02

Joint ci ratio: 4.392368e-02	ci left: 6.087292e-02	ci right 6.361495e-02	k: 7468	n:120000
Cons ci ratio: 1.021419e-01	ci left: 1.150530e-02	ci right 1.275178e-02	k: 1454	n:120000
KS ci ratio: 1.079007e-02	ci left: 5.209445e-01	ci right 5.266043e-01	k: 62853	n:120000
ABHD2   120000 perm   29 sec   (4154 perm/sec)   p_kst 5.237750e-01   p_cons 1.211667e-02   p_joint 6.223333e-02

Joint ci ratio: 4.451186e-02	ci left: 5.504546e-02	ci right 5.755899e-02	k: 7318	n:130000
Cons ci ratio: 9.823733e-02	ci left: 1.150522e-02	ci right 1.270130e-02	k: 1572	n:130000
KS ci ratio: 1.037440e-02	ci left: 5.206883e-01	ci right 5.261260e-01	k: 68043	n:130000
ABHD2   130000 perm   32 sec   (4094 perm/sec)   p_kst 5.234077e-01   p_cons 1.209231e-02   p_joint 5.629231e-02

Outputting figure to mutsig2_images.part000000000001/ABHD2.4_1314_130000_0.52341_0.012092_0.056292.png
                gene_name: ABHD2
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.058 

Current progress: 64 percent done.
A4GALT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.386300e-02	ci left: 5.628341e-01	ci right 5.823236e-01	k: 5726	n:10000
Cons ci ratio: 3.080975e-02	ci left: 6.084942e-01	ci right 6.276370e-01	k: 6181	n:10000
KS ci ratio: 4.384107e-02	ci left: 4.344288e-01	ci right 4.540037e-01	k: 4442	n:10000
A4GALT   10000 perm   2 sec   (6557 perm/sec)   p_kst 4.442000e-01   p_cons 6.181000e-01   p_joint 5.726000e-01

Outputting figure to mutsig2_images.part000000000001/A4GALT.3_1066_10000_0.4442_0.6181_0.5726.png
                gene_name: A4GALT
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 65 percent done.
AAAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.269452e-02	ci left: 1.446231e-01	ci right 1.587804e-01	k: 1516	n:10000
Cons ci ratio: 6.100950e-02	ci left: 2.831991e-01	ci right 3.011221e-01	k: 2921	n:10000
KS ci ratio: 1.169468e-01	ci left: 9.506351e-02	ci right 1.069701e-01	k: 1009	n:10000
AAAS   10000 perm   2 sec   (6018 perm/sec)   p_kst 1.009000e-01   p_cons 2.921000e-01   p_joint 1.516000e-01

Joint ci ratio: 7.563504e-02	ci left: 1.139039e-01	ci right 1.229073e-01	k: 2367	n:20000
Cons ci ratio: 4.371043e-02	ci left: 2.804887e-01	ci right 2.930733e-01	k: 5735	n:20000
KS ci ratio: 8.461913e-02	ci left: 9.278496e-02	ci right 1.010327e-01	k: 1937	n:20000
AAAS   20000 perm   4 sec   (5312 perm/sec)   p_kst 9.685000e-02   p_cons 2.867500e-01   p_joint 1.183500e-01

Outputting figure to mutsig2_images.part000000000001/AAAS.3_1705_20000_0.09685_0.28675_0.11835.png
                gene_name: AAAS
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 66 percent done.
AADAC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.066559e-01	ci left: 1.126178e-01	ci right 1.254051e-01	k: 1189	n:10000
Cons ci ratio: 3.518185e-02	ci left: 5.439926e-01	ci right 5.635761e-01	k: 5538	n:10000
KS ci ratio: 1.601820e-01	ci left: 5.195823e-02	ci right 6.110226e-02	k: 564	n:10000
AADAC   10000 perm   2 sec   (6053 perm/sec)   p_kst 5.640000e-02   p_cons 5.538000e-01   p_joint 1.189000e-01

Joint ci ratio: 6.701042e-02	ci left: 1.411823e-01	ci right 1.510208e-01	k: 2921	n:20000
Cons ci ratio: 2.497975e-02	ci left: 5.448757e-01	ci right 5.587093e-01	k: 11036	n:20000
KS ci ratio: 1.139647e-01	ci left: 5.265862e-02	ci right 5.907127e-02	k: 1116	n:20000
AADAC   20000 perm   4 sec   (4597 perm/sec)   p_kst 5.580000e-02   p_cons 5.518000e-01   p_joint 1.460500e-01

Joint ci ratio: 5.656328e-02	ci left: 1.340827e-01	ci right 1.419208e-01	k: 4139	n:30000
Cons ci ratio: 2.033866e-02	ci left: 5.475526e-01	ci right 5.588371e-01	k: 16596	n:30000
KS ci ratio: 9.225331e-02	ci left: 5.414196e-02	ci right 5.941095e-02	k: 1702	n:30000
AADAC   30000 perm   8 sec   (3961 perm/sec)   p_kst 5.673333e-02   p_cons 5.532000e-01   p_joint 1.379667e-01

Outputting figure to mutsig2_images.part000000000001/AADAC.3_1220_30000_0.056733_0.5532_0.13797.png
                gene_name: AADAC
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 68 percent done.
AASDHPPT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.113531e-03	ci left: 9.549276e-01	ci right 9.628022e-01	k: 9590	n:10000
Cons ci ratio: 3.071847e-02	ci left: 6.099005e-01	ci right 6.290299e-01	k: 6195	n:10000
KS ci ratio: 3.802803e-02	ci left: 5.052515e-01	ci right 5.249398e-01	k: 5151	n:10000
AASDHPPT   10000 perm   2 sec   (5998 perm/sec)   p_kst 5.151000e-01   p_cons 6.195000e-01   p_joint 9.590000e-01

Outputting figure to mutsig2_images.part000000000001/AASDHPPT.3_954_10000_0.5151_0.6195_0.959.png
                gene_name: AASDHPPT
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 69 percent done.
ABCB10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.170639e-02	ci left: 1.793999e-01	ci right 1.947829e-01	k: 1870	n:10000
Cons ci ratio: 6.135045e-02	ci left: 2.809205e-01	ci right 2.988021e-01	k: 2898	n:10000
KS ci ratio: 6.142503e-02	ci left: 2.804252e-01	ci right 2.982977e-01	k: 2893	n:10000
ABCB10   10000 perm   2 sec   (6050 perm/sec)   p_kst 2.893000e-01   p_cons 2.898000e-01   p_joint 1.870000e-01

Outputting figure to mutsig2_images.part000000000001/ABCB10.3_2269_10000_0.2893_0.2898_0.187.png
                gene_name: ABCB10
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 70 percent done.
ABCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.252558e-01	ci left: 8.358655e-02	ci right 9.485408e-02	k: 891	n:10000
Cons ci ratio: 1.070134e-01	ci left: 1.119342e-01	ci right 1.246891e-01	k: 1182	n:10000
KS ci ratio: 1.023572e-01	ci left: 1.213154e-01	ci right 1.345022e-01	k: 1278	n:10000
ABCD1   10000 perm   2 sec   (5315 perm/sec)   p_kst 1.278000e-01   p_cons 1.182000e-01   p_joint 8.910000e-02

Joint ci ratio: 7.199204e-02	ci left: 1.244328e-01	ci right 1.337753e-01	k: 2581	n:20000
Cons ci ratio: 7.444539e-02	ci left: 1.171992e-01	ci right 1.263111e-01	k: 2434	n:20000
KS ci ratio: 7.296871e-02	ci left: 1.214797e-01	ci right 1.307293e-01	k: 2521	n:20000
ABCD1   20000 perm   4 sec   (4882 perm/sec)   p_kst 1.260500e-01   p_cons 1.217000e-01   p_joint 1.290500e-01

Outputting figure to mutsig2_images.part000000000001/ABCD1.3_2278_20000_0.12605_0.1217_0.12905.png
                gene_name: ABCD1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 72 percent done.
ABCD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.120650e-02	ci left: 3.599296e-01	ci right 3.789466e-01	k: 3694	n:10000
Cons ci ratio: 7.368076e-02	ci left: 2.124066e-01	ci right 2.287565e-01	k: 2205	n:10000
KS ci ratio: 8.077830e-02	ci left: 1.828443e-01	ci right 1.983364e-01	k: 1905	n:10000
ABCD3   10000 perm   2 sec   (5731 perm/sec)   p_kst 1.905000e-01   p_cons 2.205000e-01   p_joint 3.694000e-01

Outputting figure to mutsig2_images.part000000000001/ABCD3.3_2103_10000_0.1905_0.2205_0.3694.png
                gene_name: ABCD3
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 73 percent done.
ABCF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.940915e-02	ci left: 3.766417e-01	ci right 3.958246e-01	k: 3862	n:10000
Cons ci ratio: 1.379870e-02	ci left: 8.834987e-01	ci right 8.958733e-01	k: 8898	n:10000
KS ci ratio: 5.593140e-02	ci left: 3.200898e-01	ci right 3.386097e-01	k: 3293	n:10000
ABCF2   10000 perm   2 sec   (5363 perm/sec)   p_kst 3.293000e-01   p_cons 8.898000e-01   p_joint 3.862000e-01

Outputting figure to mutsig2_images.part000000000001/ABCF2.3_1969_10000_0.3293_0.8898_0.3862.png
                gene_name: ABCF2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 74 percent done.
ABCF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.829904e-02	ci left: 1.304150e-01	ci right 1.439971e-01	k: 1371	n:10000
Cons ci ratio: 6.846118e-02	ci left: 2.383743e-01	ci right 2.553734e-01	k: 2468	n:10000
KS ci ratio: 1.164346e-01	ci left: 9.584256e-02	ci right 1.077905e-01	k: 1017	n:10000
ABCF3   10000 perm   2 sec   (4483 perm/sec)   p_kst 1.017000e-01   p_cons 2.468000e-01   p_joint 1.371000e-01

Joint ci ratio: 5.785201e-02	ci left: 1.812709e-01	ci right 1.921203e-01	k: 3733	n:20000
Cons ci ratio: 4.864524e-02	ci left: 2.391014e-01	ci right 2.510728e-01	k: 4901	n:20000
KS ci ratio: 8.231076e-02	ci left: 9.764233e-02	ci right 1.060738e-01	k: 2036	n:20000
ABCF3   20000 perm   5 sec   (4086 perm/sec)   p_kst 1.018000e-01   p_cons 2.450500e-01   p_joint 1.866500e-01

Outputting figure to mutsig2_images.part000000000001/ABCF3.3_2214_20000_0.1018_0.24505_0.18665.png
                gene_name: ABCF3
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 76 percent done.
ABCG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.143955e-02	ci left: 5.988532e-01	ci right 6.180835e-01	k: 6085	n:10000
Cons ci ratio: 6.157470e-02	ci left: 2.794346e-01	ci right 2.972888e-01	k: 2883	n:10000
KS ci ratio: 2.883840e-02	ci left: 6.393519e-01	ci right 6.581613e-01	k: 6488	n:10000
ABCG4   10000 perm   2 sec   (5919 perm/sec)   p_kst 6.488000e-01   p_cons 2.883000e-01   p_joint 6.085000e-01

Outputting figure to mutsig2_images.part000000000001/ABCG4.3_1997_10000_0.6488_0.2883_0.6085.png
                gene_name: ABCG4
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 77 percent done.
ABHD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.480377e-02	ci left: 4.237578e-01	ci right 4.432810e-01	k: 4335	n:10000
Cons ci ratio: 5.952407e-02	ci left: 2.934065e-01	ci right 3.115087e-01	k: 3024	n:10000
KS ci ratio: 4.012206e-02	ci left: 4.784575e-01	ci right 4.981493e-01	k: 4883	n:10000
ABHD3   10000 perm   2 sec   (6062 perm/sec)   p_kst 4.883000e-01   p_cons 3.024000e-01   p_joint 4.335000e-01

Outputting figure to mutsig2_images.part000000000001/ABHD3.3_1266_10000_0.4883_0.3024_0.4335.png
                gene_name: ABHD3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 78 percent done.
ABHD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.688723e-02	ci left: 1.983069e-01	ci right 2.142646e-01	k: 2062	n:10000
KS ci ratio: 2.047888e-02	ci left: 7.774236e-01	ci right 7.936097e-01	k: 7856	n:10000
ABHD4   10000 perm   1 sec   (6943 perm/sec)   p_kst 7.856000e-01   p_cons 2.062000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABHD4.3_1057_10000_0.7856_0.2062_1.png
                gene_name: ABHD4
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
ABI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.833233e-02	ci left: 3.870929e-01	ci right 4.063673e-01	k: 3967	n:10000
Cons ci ratio: 2.031327e-01	ci left: 3.224430e-02	ci right 3.962922e-02	k: 358	n:10000
KS ci ratio: 1.767305e-02	ci left: 8.236106e-01	ci right 8.383961e-01	k: 8311	n:10000
ABI1   10000 perm   2 sec   (6226 perm/sec)   p_kst 8.311000e-01   p_cons 3.580000e-02   p_joint 3.967000e-01

Joint ci ratio: 5.868446e-02	ci left: 1.770200e-01	ci right 1.877725e-01	k: 3647	n:20000
Cons ci ratio: 1.488811e-01	ci left: 3.100104e-02	ci right 3.603577e-02	k: 669	n:20000
KS ci ratio: 1.252733e-02	ci left: 8.251260e-01	ci right 8.355777e-01	k: 16608	n:20000
ABI1   20000 perm   4 sec   (5514 perm/sec)   p_kst 8.304000e-01   p_cons 3.345000e-02   p_joint 1.823500e-01

Joint ci ratio: 4.233101e-02	ci left: 2.175723e-01	ci right 2.270149e-01	k: 6668	n:30000
Cons ci ratio: 1.343342e-01	ci left: 2.574314e-02	ci right 2.948243e-02	k: 827	n:30000
KS ci ratio: 1.024653e-02	ci left: 8.255998e-01	ci right 8.341362e-01	k: 24897	n:30000
ABI1   30000 perm   6 sec   (5272 perm/sec)   p_kst 8.299000e-01   p_cons 2.756667e-02   p_joint 2.222667e-01

Joint ci ratio: 3.675815e-02	ci left: 2.172894e-01	ci right 2.254511e-01	k: 8854	n:40000
Cons ci ratio: 1.161750e-01	ci left: 2.606501e-02	ci right 2.930405e-02	k: 1106	n:40000
KS ci ratio: 8.822579e-03	ci left: 8.278205e-01	ci right 8.351813e-01	k: 33261	n:40000
ABI1   40000 perm   8 sec   (5118 perm/sec)   p_kst 8.315250e-01   p_cons 2.765000e-02   p_joint 2.213500e-01

Joint ci ratio: 3.214866e-02	ci left: 2.255017e-01	ci right 2.328897e-01	k: 11459	n:50000
Cons ci ratio: 1.042888e-01	ci left: 2.604508e-02	ci right 2.893013e-02	k: 1373	n:50000
KS ci ratio: 7.935715e-03	ci left: 8.266179e-01	ci right 8.332237e-01	k: 41497	n:50000
ABI1   50000 perm   10 sec   (4991 perm/sec)   p_kst 8.299400e-01   p_cons 2.746000e-02   p_joint 2.291800e-01

Joint ci ratio: 3.010685e-02	ci left: 2.169725e-01	ci right 2.236213e-01	k: 13217	n:60000
Cons ci ratio: 9.543478e-02	ci left: 2.604323e-02	ci right 2.866942e-02	k: 1640	n:60000
KS ci ratio: 7.241868e-03	ci left: 8.270037e-01	ci right 8.330311e-01	k: 49802	n:60000
ABI1   60000 perm   12 sec   (4875 perm/sec)   p_kst 8.300333e-01   p_cons 2.733333e-02   p_joint 2.202833e-01

Outputting figure to mutsig2_images.part000000000001/ABI1.3_1630_60000_0.83003_0.027333_0.22028.png
                gene_name: ABI1
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.22 

Current progress: 81 percent done.
A2BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.182125e-02	ci left: 4.577814e-01	ci right 4.774375e-01	k: 4676	n:10000
Cons ci ratio: 1.094056e-02	ci left: 9.225516e-01	ci right 9.327976e-01	k: 9278	n:10000
KS ci ratio: 9.269452e-02	ci left: 1.446231e-01	ci right 1.587804e-01	k: 1516	n:10000
A2BP1   10000 perm   1 sec   (6743 perm/sec)   p_kst 1.516000e-01   p_cons 9.278000e-01   p_joint 4.676000e-01

Outputting figure to mutsig2_images.part000000000001/A2BP1.2_1441_10000_0.1516_0.9278_0.4676.png
                gene_name: A2BP1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 82 percent done.
AADACL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.477206e-02	ci left: 7.056371e-01	ci right 7.234378e-01	k: 7146	n:10000
KS ci ratio: 5.841444e-02	ci left: 3.013384e-01	ci right 3.195722e-01	k: 3104	n:10000
AADACL3   10000 perm   1 sec   (6891 perm/sec)   p_kst 3.104000e-01   p_cons 7.146000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/AADACL3.2_1073_10000_0.3104_0.7146_1.png
                gene_name: AADACL3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
AAK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.515205e-02	ci left: 4.199692e-01	ci right 4.394718e-01	k: 4297	n:10000
Cons ci ratio: 4.237972e-02	ci left: 4.511926e-01	ci right 4.708301e-01	k: 4610	n:10000
KS ci ratio: 1.145032e-01	ci left: 9.886244e-02	ci right 1.109688e-01	k: 1048	n:10000
AAK1   10000 perm   2 sec   (5483 perm/sec)   p_kst 1.048000e-01   p_cons 4.610000e-01   p_joint 4.297000e-01

Joint ci ratio: 2.281284e-02	ci left: 5.893112e-01	ci right 6.029608e-01	k: 11923	n:20000
Cons ci ratio: 2.910069e-02	ci left: 4.687077e-01	ci right 4.825994e-01	k: 9513	n:20000
KS ci ratio: 8.005400e-02	ci left: 1.027483e-01	ci right 1.113663e-01	k: 2140	n:20000
AAK1   20000 perm   4 sec   (5039 perm/sec)   p_kst 1.070000e-01   p_cons 4.756500e-01   p_joint 5.961500e-01

Outputting figure to mutsig2_images.part000000000001/AAK1.2_2970_20000_0.107_0.47565_0.59615.png
                gene_name: AAK1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 85 percent done.
AARSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.184518e-03	ci left: 9.801637e-01	ci right 9.853496e-01	k: 9829	n:10000
Cons ci ratio: 9.805070e-02	ci left: 1.310025e-01	ci right 1.446093e-01	k: 1377	n:10000
KS ci ratio: 2.246886e-02	ci left: 7.441210e-01	ci right 7.611316e-01	k: 7527	n:10000
AARSD1   10000 perm   2 sec   (6360 perm/sec)   p_kst 7.527000e-01   p_cons 1.377000e-01   p_joint 9.829000e-01

Outputting figure to mutsig2_images.part000000000001/AARSD1.2_1872_10000_0.7527_0.1377_0.9829.png
                gene_name: AARSD1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 86 percent done.
AATF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.140663e-02	ci left: 9.165701e-01	ci right 9.271826e-01	k: 9220	n:10000
Cons ci ratio: 2.669787e-02	ci left: 6.738786e-01	ci right 6.922147e-01	k: 6831	n:10000
KS ci ratio: 3.076409e-02	ci left: 6.091973e-01	ci right 6.283334e-01	k: 6188	n:10000
AATF   10000 perm   2 sec   (6192 perm/sec)   p_kst 6.188000e-01   p_cons 6.831000e-01   p_joint 9.220000e-01

Outputting figure to mutsig2_images.part000000000001/AATF.2_1731_10000_0.6188_0.6831_0.922.png
                gene_name: AATF
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 88 percent done.
ABCB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.345683e-02	ci left: 2.673539e-01	ci right 2.849767e-01	k: 2761	n:10000
Cons ci ratio: 8.049148e-02	ci left: 1.839270e-01	ci right 1.994530e-01	k: 1916	n:10000
KS ci ratio: 5.761920e-02	ci left: 3.071901e-01	ci right 3.255170e-01	k: 3163	n:10000
ABCB9   10000 perm   2 sec   (5979 perm/sec)   p_kst 3.163000e-01   p_cons 1.916000e-01   p_joint 2.761000e-01

Outputting figure to mutsig2_images.part000000000001/ABCB9.2_2345_10000_0.3163_0.1916_0.2761.png
                gene_name: ABCB9
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 89 percent done.
ABCF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.286896e-02	ci left: 4.455036e-01	ci right 4.651224e-01	k: 4553	n:10000
Cons ci ratio: 5.183877e-02	ci left: 3.542622e-01	ci right 3.732173e-01	k: 3637	n:10000
KS ci ratio: 1.296871e-02	ci left: 8.953894e-01	ci right 9.071756e-01	k: 9014	n:10000
ABCF1   10000 perm   2 sec   (6110 perm/sec)   p_kst 9.014000e-01   p_cons 3.637000e-01   p_joint 4.553000e-01

Outputting figure to mutsig2_images.part000000000001/ABCF1.2_2638_10000_0.9014_0.3637_0.4553.png
                gene_name: ABCF1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 91 percent done.
ABHD12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.944572e-02	ci left: 4.869525e-01	ci right 5.066494e-01	k: 4968	n:10000
Cons ci ratio: 5.715629e-02	ci left: 3.106623e-01	ci right 3.290427e-01	k: 3198	n:10000
KS ci ratio: 3.864930e-02	ci left: 4.971503e-01	ci right 5.168456e-01	k: 5070	n:10000
ABHD12   10000 perm   2 sec   (6559 perm/sec)   p_kst 5.070000e-01   p_cons 3.198000e-01   p_joint 4.968000e-01

Outputting figure to mutsig2_images.part000000000001/ABHD12.2_1311_10000_0.507_0.3198_0.4968.png
                gene_name: ABHD12
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 92 percent done.
ABHD12B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.406538e-02	ci left: 2.635927e-01	ci right 2.811401e-01	k: 2723	n:10000
Cons ci ratio: 1.123610e-01	ci left: 1.023714e-01	ci right 1.146577e-01	k: 1084	n:10000
KS ci ratio: 1.157396e-01	ci left: 9.691393e-02	ci right 1.089185e-01	k: 1028	n:10000
ABHD12B   10000 perm   1 sec   (6901 perm/sec)   p_kst 1.028000e-01   p_cons 1.084000e-01   p_joint 2.723000e-01

Joint ci ratio: 6.674315e-02	ci left: 1.421683e-01	ci right 1.520345e-01	k: 2941	n:20000
Cons ci ratio: 7.802814e-02	ci left: 1.076609e-01	ci right 1.164522e-01	k: 2240	n:20000
KS ci ratio: 8.208660e-02	ci left: 9.813315e-02	ci right 1.065829e-01	k: 2046	n:20000
ABHD12B   20000 perm   3 sec   (6220 perm/sec)   p_kst 1.023000e-01   p_cons 1.120000e-01   p_joint 1.470500e-01

Outputting figure to mutsig2_images.part000000000001/ABHD12B.2_920_20000_0.1023_0.112_0.14705.png
                gene_name: ABHD12B
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 93 percent done.
ABHD13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.724836e-02	ci left: 3.099678e-01	ci right 3.283376e-01	k: 3191	n:10000
Cons ci ratio: 3.720675e-02	ci left: 5.161571e-01	ci right 5.358278e-01	k: 5260	n:10000
KS ci ratio: 6.558609e-02	ci left: 2.544899e-01	ci right 2.718482e-01	k: 2631	n:10000
ABHD13   10000 perm   1 sec   (7042 perm/sec)   p_kst 2.631000e-01   p_cons 5.260000e-01   p_joint 3.191000e-01

Outputting figure to mutsig2_images.part000000000001/ABHD13.2_1018_10000_0.2631_0.526_0.3191.png
                gene_name: ABHD13
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 95 percent done.
ABHD14B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
Cons ci ratio: 2.971815e-01	ci left: 1.455775e-02	ci right 1.972903e-02	k: 170	n:10000
KS ci ratio: 1.513557e-02	ci left: 8.635571e-01	ci right 8.768264e-01	k: 8703	n:10000
ABHD14B   10000 perm   1 sec   (6927 perm/sec)   p_kst 8.703000e-01   p_cons 1.700000e-02   p_joint 7.700000e-03

Joint ci ratio: 2.924988e-01	ci left: 7.598793e-03	ci right 1.024694e-02	k: 177	n:20000
Cons ci ratio: 2.098322e-01	ci left: 1.534872e-02	ci right 1.899360e-02	k: 342	n:20000
KS ci ratio: 1.055889e-02	ci left: 8.686107e-01	ci right 8.778805e-01	k: 17466	n:20000
ABHD14B   20000 perm   3 sec   (6190 perm/sec)   p_kst 8.733000e-01   p_cons 1.710000e-02   p_joint 8.850000e-03

Joint ci ratio: 2.411146e-01	ci left: 7.680255e-03	ci right 9.816515e-03	k: 261	n:30000
Cons ci ratio: 1.752693e-01	ci left: 1.496121e-02	ci right 1.786686e-02	k: 491	n:30000
KS ci ratio: 8.554691e-03	ci left: 8.712046e-01	ci right 8.787226e-01	k: 26250	n:30000
ABHD14B   30000 perm   5 sec   (5875 perm/sec)   p_kst 8.750000e-01   p_cons 1.636667e-02   p_joint 8.700000e-03

Joint ci ratio: 2.158859e-01	ci left: 7.292263e-03	ci right 9.080242e-03	k: 326	n:40000
Cons ci ratio: 1.554420e-01	ci left: 1.443239e-02	ci right 1.688866e-02	k: 625	n:40000
KS ci ratio: 7.440594e-03	ci left: 8.707588e-01	ci right 8.772868e-01	k: 34962	n:40000
ABHD14B   40000 perm   7 sec   (5686 perm/sec)   p_kst 8.740500e-01   p_cons 1.562500e-02   p_joint 8.150000e-03

Joint ci ratio: 1.947224e-01	ci left: 7.256858e-03	ci right 8.841058e-03	k: 401	n:50000
Cons ci ratio: 1.382709e-01	ci left: 1.472515e-02	ci right 1.693159e-02	k: 790	n:50000
KS ci ratio: 6.636559e-03	ci left: 8.717260e-01	ci right 8.775504e-01	k: 43733	n:50000
ABHD14B   50000 perm   9 sec   (5550 perm/sec)   p_kst 8.746600e-01   p_cons 1.580000e-02   p_joint 8.020000e-03

Joint ci ratio: 1.795285e-01	ci left: 7.175327e-03	ci right 8.606222e-03	k: 472	n:60000
Cons ci ratio: 1.265765e-01	ci left: 1.473660e-02	ci right 1.674397e-02	k: 943	n:60000
KS ci ratio: 6.052111e-03	ci left: 8.722095e-01	ci right 8.775208e-01	k: 52493	n:60000
ABHD14B   60000 perm   11 sec   (5419 perm/sec)   p_kst 8.748833e-01   p_cons 1.571667e-02   p_joint 7.866667e-03

Joint ci ratio: 1.666430e-01	ci left: 7.189014e-03	ci right 8.509415e-03	k: 548	n:70000
Cons ci ratio: 1.173678e-01	ci left: 1.476433e-02	ci right 1.661899e-02	k: 1097	n:70000
KS ci ratio: 5.617328e-03	ci left: 8.718503e-01	ci right 8.767757e-01	k: 61203	n:70000
ABHD14B   70000 perm   13 sec   (5295 perm/sec)   p_kst 8.743286e-01   p_cons 1.567143e-02   p_joint 7.828571e-03

Joint ci ratio: 1.568188e-01	ci left: 7.141976e-03	ci right 8.369126e-03	k: 619	n:80000
Cons ci ratio: 1.104085e-01	ci left: 1.465535e-02	ci right 1.638005e-02	k: 1240	n:80000
KS ci ratio: 5.245628e-03	ci left: 8.723861e-01	ci right 8.769867e-01	k: 69976	n:80000
ABHD14B   80000 perm   15 sec   (5188 perm/sec)   p_kst 8.747000e-01   p_cons 1.550000e-02   p_joint 7.737500e-03

Joint ci ratio: 1.492036e-01	ci left: 7.042976e-03	ci right 8.189103e-03	k: 684	n:90000
Cons ci ratio: 1.054105e-01	ci left: 1.433502e-02	ci right 1.594090e-02	k: 1361	n:90000
KS ci ratio: 4.955383e-03	ci left: 8.720830e-01	ci right 8.764262e-01	k: 78684	n:90000
ABHD14B   90000 perm   18 sec   (5082 perm/sec)   p_kst 8.742667e-01   p_cons 1.512222e-02   p_joint 7.600000e-03

Joint ci ratio: 1.431779e-01	ci left: 6.907067e-03	ci right 7.981799e-03	k: 743	n:100000
Cons ci ratio: 9.994537e-02	ci left: 1.439226e-02	ci right 1.591605e-02	k: 1514	n:100000
KS ci ratio: 4.706566e-03	ci left: 8.719374e-01	ci right 8.760608e-01	k: 87401	n:100000
ABHD14B   100000 perm   20 sec   (4985 perm/sec)   p_kst 8.740100e-01   p_cons 1.514000e-02   p_joint 7.430000e-03

Joint ci ratio: 1.363805e-01	ci left: 6.945917e-03	ci right 7.971218e-03	k: 819	n:110000
Cons ci ratio: 9.542512e-02	ci left: 1.438759e-02	ci right 1.583814e-02	k: 1661	n:110000
KS ci ratio: 4.486434e-03	ci left: 8.720886e-01	ci right 8.760189e-01	k: 96147	n:110000
ABHD14B   110000 perm   22 sec   (4893 perm/sec)   p_kst 8.740636e-01   p_cons 1.510000e-02   p_joint 7.445455e-03

Joint ci ratio: 1.303944e-01	ci left: 6.987360e-03	ci right 7.970000e-03	k: 896	n:120000
Cons ci ratio: 9.118638e-02	ci left: 1.447460e-02	ci right 1.586564e-02	k: 1819	n:120000
KS ci ratio: 4.304955e-03	ci left: 8.716815e-01	ci right 8.754504e-01	k: 104829	n:120000
ABHD14B   120000 perm   25 sec   (4805 perm/sec)   p_kst 8.735750e-01   p_cons 1.515833e-02   p_joint 7.466667e-03

Joint ci ratio: 1.257852e-01	ci left: 6.948734e-03	ci right 7.888823e-03	k: 963	n:130000
Cons ci ratio: 8.780523e-02	ci left: 1.443654e-02	ci right 1.576983e-02	k: 1962	n:130000
KS ci ratio: 4.136458e-03	ci left: 8.717350e-01	ci right 8.753560e-01	k: 113562	n:130000
ABHD14B   130000 perm   28 sec   (4706 perm/sec)   p_kst 8.735538e-01   p_cons 1.509231e-02   p_joint 7.407692e-03

Joint ci ratio: 1.213956e-01	ci left: 6.943861e-03	ci right 7.848150e-03	k: 1034	n:140000
Cons ci ratio: 8.463158e-02	ci left: 1.445369e-02	ci right 1.573793e-02	k: 2112	n:140000
KS ci ratio: 3.982576e-03	ci left: 8.719917e-01	ci right 8.754785e-01	k: 122324	n:140000
ABHD14B   140000 perm   31 sec   (4587 perm/sec)   p_kst 8.737429e-01   p_cons 1.508571e-02   p_joint 7.385714e-03

Joint ci ratio: 1.170101e-01	ci left: 6.991912e-03	ci right 7.867290e-03	k: 1113	n:150000
Cons ci ratio: 8.211112e-02	ci left: 1.435173e-02	ci right 1.558712e-02	k: 2244	n:150000
KS ci ratio: 3.840369e-03	ci left: 8.724643e-01	ci right 8.758279e-01	k: 131123	n:150000
ABHD14B   150000 perm   33 sec   (4496 perm/sec)   p_kst 8.741533e-01   p_cons 1.496000e-02   p_joint 7.420000e-03

Joint ci ratio: 1.138396e-01	ci left: 6.937288e-03	ci right 7.780711e-03	k: 1176	n:160000
Cons ci ratio: 7.956562e-02	ci left: 1.434880e-02	ci right 1.554387e-02	k: 2390	n:160000
KS ci ratio: 3.717736e-03	ci left: 8.725589e-01	ci right 8.758150e-01	k: 139871	n:160000
ABHD14B   160000 perm   36 sec   (4429 perm/sec)   p_kst 8.741937e-01   p_cons 1.493750e-02   p_joint 7.350000e-03

Joint ci ratio: 1.098914e-01	ci left: 7.020958e-03	ci right 7.843033e-03	k: 1262	n:170000
Cons ci ratio: 7.727400e-02	ci left: 1.433520e-02	ci right 1.549319e-02	k: 2534	n:170000
KS ci ratio: 3.602866e-03	ci left: 8.728449e-01	ci right 8.760011e-01	k: 148653	n:170000
ABHD14B   170000 perm   39 sec   (4358 perm/sec)   p_kst 8.744294e-01   p_cons 1.490588e-02   p_joint 7.423529e-03

Joint ci ratio: 1.067669e-01	ci left: 7.036286e-03	ci right 7.835257e-03	k: 1337	n:180000
Cons ci ratio: 7.507013e-02	ci left: 1.436172e-02	ci right 1.548732e-02	k: 2685	n:180000
KS ci ratio: 3.502708e-03	ci left: 8.728044e-01	ci right 8.758724e-01	k: 157382	n:180000
ABHD14B   180000 perm   42 sec   (4285 perm/sec)   p_kst 8.743444e-01   p_cons 1.491667e-02   p_joint 7.427778e-03

Joint ci ratio: 1.037836e-01	ci left: 7.065678e-03	ci right 7.844200e-03	k: 1415	n:190000
Cons ci ratio: 7.288833e-02	ci left: 1.444788e-02	ci right 1.554593e-02	k: 2848	n:190000
KS ci ratio: 3.410219e-03	ci left: 8.727852e-01	ci right 8.757718e-01	k: 166114	n:190000
ABHD14B   190000 perm   45 sec   (4222 perm/sec)   p_kst 8.742842e-01   p_cons 1.498947e-02   p_joint 7.447368e-03

Joint ci ratio: 1.007658e-01	ci left: 7.131407e-03	ci right 7.892972e-03	k: 1501	n:200000
Cons ci ratio: 7.099408e-02	ci left: 1.448165e-02	ci right 1.555248e-02	k: 3002	n:200000
KS ci ratio: 3.323025e-03	ci left: 8.728794e-01	ci right 8.757898e-01	k: 174868	n:200000
ABHD14B   200000 perm   48 sec   (4149 perm/sec)   p_kst 8.743400e-01   p_cons 1.501000e-02   p_joint 7.505000e-03

Joint ci ratio: 9.837192e-02	ci left: 7.135423e-03	ci right 7.878268e-03	k: 1575	n:210000
Cons ci ratio: 6.917353e-02	ci left: 1.454061e-02	ci right 1.558712e-02	k: 3162	n:210000
KS ci ratio: 3.244442e-03	ci left: 8.728124e-01	ci right 8.756535e-01	k: 183590	n:210000
ABHD14B   210000 perm   51 sec   (4080 perm/sec)   p_kst 8.742381e-01   p_cons 1.505714e-02   p_joint 7.500000e-03

Outputting figure to mutsig2_images.part000000000001/ABHD14B.2_645_210000_0.87424_0.015057_0.0075.png
                gene_name: ABHD14B
               theta_stop: 0.098 
                    nperm: 210000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.0075 
     ci_joint_bounds_left: 0.0071 
    ci_joint_bounds_right: 0.0079 

Current progress: 96 percent done.
ABHD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.564880e-02	ci left: 6.911127e-01	ci right 7.091706e-01	k: 7002	n:10000
KS ci ratio: 8.954934e-02	ci left: 1.535515e-01	ci right 1.680467e-01	k: 1607	n:10000
ABHD5   10000 perm   2 sec   (6496 perm/sec)   p_kst 1.607000e-01   p_cons 7.002000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000001/ABHD5.2_1078_10000_0.1607_0.7002_1.png
                gene_name: ABHD5
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
ABHD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.974911e-02	ci left: 6.249733e-01	ci right 6.439483e-01	k: 6345	n:10000
Cons ci ratio: 4.449503e-02	ci left: 4.271481e-01	ci right 4.466887e-01	k: 4369	n:10000
KS ci ratio: 3.982620e-02	ci left: 4.821550e-01	ci right 5.018497e-01	k: 4920	n:10000
ABHD6   10000 perm   2 sec   (6387 perm/sec)   p_kst 4.920000e-01   p_cons 4.369000e-01   p_joint 6.345000e-01

Outputting figure to mutsig2_images.part000000000001/ABHD6.2_1046_10000_0.492_0.4369_0.6345.png
                gene_name: ABHD6
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 99 percent done.
ABI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.614075e-01	ci left: 2.355713e-03	ci right 4.747948e-03	k: 34	n:10000
Cons ci ratio: 1.123029e-01	ci left: 1.024689e-01	ci right 1.147601e-01	k: 1085	n:10000
KS ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
ABI3   10000 perm   1 sec   (6764 perm/sec)   p_kst 9.800000e-03   p_cons 1.085000e-01   p_joint 3.400000e-03

Joint ci ratio: 5.139616e-01	ci left: 2.159255e-03	ci right 3.690949e-03	k: 57	n:20000
Cons ci ratio: 7.892335e-02	ci left: 1.054499e-01	ci right 1.141639e-01	k: 2195	n:20000
KS ci ratio: 2.779027e-01	ci left: 8.481394e-03	ci right 1.126389e-02	k: 196	n:20000
ABI3   20000 perm   3 sec   (6028 perm/sec)   p_kst 9.800000e-03   p_cons 1.097500e-01   p_joint 2.850000e-03

Joint ci ratio: 2.401915e-01	ci left: 7.742931e-03	ci right 9.887152e-03	k: 263	n:30000
Cons ci ratio: 6.542699e-02	ci left: 1.033594e-01	ci right 1.103836e-01	k: 3205	n:30000
KS ci ratio: 2.282778e-01	ci left: 8.621951e-03	ci right 1.087452e-02	k: 291	n:30000
ABI3   30000 perm   5 sec   (5748 perm/sec)   p_kst 9.700000e-03   p_cons 1.068333e-01   p_joint 8.766667e-03

Joint ci ratio: 4.222446e-01	ci left: 1.697716e-03	ci right 2.626935e-03	k: 85	n:40000
Cons ci ratio: 5.628395e-02	ci left: 1.050978e-01	ci right 1.112092e-01	k: 4325	n:40000
KS ci ratio: 1.962579e-01	ci left: 8.905409e-03	ci right 1.086673e-02	k: 394	n:40000
ABI3   40000 perm   7 sec   (5560 perm/sec)   p_kst 9.850000e-03   p_cons 1.081250e-01   p_joint 2.125000e-03

Joint ci ratio: 7.713133e-02	ci left: 4.722226e-02	ci right 5.103031e-02	k: 2455	n:50000
Cons ci ratio: 5.030289e-02	ci left: 1.055691e-01	ci right 1.110364e-01	k: 5414	n:50000
KS ci ratio: 1.732067e-01	ci left: 9.261239e-03	ci right 1.103633e-02	k: 506	n:50000
ABI3   50000 perm   9 sec   (5411 perm/sec)   p_kst 1.012000e-02   p_cons 1.082800e-01   p_joint 4.910000e-02

Joint ci ratio: 6.958565e-02	ci left: 4.848266e-02	ci right 5.199434e-02	k: 3013	n:60000
Cons ci ratio: 4.595580e-02	ci left: 1.056591e-01	ci right 1.106455e-01	k: 6488	n:60000
KS ci ratio: 1.581682e-01	ci left: 9.331373e-03	ci right 1.094987e-02	k: 607	n:60000
ABI3   60000 perm   11 sec   (5270 perm/sec)   p_kst 1.011667e-02   p_cons 1.081333e-01   p_joint 5.021667e-02

Joint ci ratio: 6.509254e-02	ci left: 4.765153e-02	ci right 5.087168e-02	k: 3447	n:70000
Cons ci ratio: 4.257049e-02	ci left: 1.057382e-01	ci right 1.103515e-01	k: 7562	n:70000
KS ci ratio: 1.454376e-01	ci left: 9.523951e-03	ci right 1.103134e-02	k: 718	n:70000
ABI3   70000 perm   14 sec   (5154 perm/sec)   p_kst 1.025714e-02   p_cons 1.080286e-01   p_joint 4.924286e-02

Joint ci ratio: 5.507027e-02	ci left: 5.791986e-02	ci right 6.121217e-02	k: 4764	n:80000
Cons ci ratio: 3.979895e-02	ci left: 1.059935e-01	ci right 1.103100e-01	k: 8651	n:80000
KS ci ratio: 1.353567e-01	ci left: 9.672315e-03	ci right 1.108853e-02	k: 829	n:80000
ABI3   80000 perm   16 sec   (5048 perm/sec)   p_kst 1.036250e-02   p_cons 1.081375e-01   p_joint 5.955000e-02

Joint ci ratio: 4.936403e-02	ci left: 6.385916e-02	ci right 6.710225e-02	k: 5892	n:90000
Cons ci ratio: 3.754987e-02	ci left: 1.059793e-01	ci right 1.100460e-01	k: 9720	n:90000
KS ci ratio: 1.292157e-01	ci left: 9.467771e-03	ci right 1.078631e-02	k: 910	n:90000
ABI3   90000 perm   18 sec   (4945 perm/sec)   p_kst 1.011111e-02   p_cons 1.080000e-01   p_joint 6.546667e-02

Joint ci ratio: 4.631367e-02	ci left: 6.529967e-02	ci right 6.840551e-02	k: 6684	n:100000
Cons ci ratio: 3.566204e-02	ci left: 1.058743e-01	ci right 1.097285e-01	k: 10779	n:100000
KS ci ratio: 1.232771e-01	ci left: 9.392556e-03	ci right 1.063611e-02	k: 1000	n:100000
ABI3   100000 perm   21 sec   (4849 perm/sec)   p_kst 1.000000e-02   p_cons 1.077900e-01   p_joint 6.684000e-02

Joint ci ratio: 4.555684e-02	ci left: 6.162516e-02	ci right 6.450702e-02	k: 6936	n:110000
Cons ci ratio: 3.402978e-02	ci left: 1.058107e-01	ci right 1.094827e-01	k: 11840	n:110000
KS ci ratio: 1.164815e-01	ci left: 9.596958e-03	ci right 1.079271e-02	k: 1120	n:110000
ABI3   110000 perm   23 sec   (4758 perm/sec)   p_kst 1.018182e-02   p_cons 1.076364e-01   p_joint 6.305455e-02

Joint ci ratio: 9.604436e-02	ci left: 1.303364e-02	ci right 1.435668e-02	k: 1642	n:120000
Cons ci ratio: 3.375000e-02	ci left: 9.935022e-02	ci right 1.027691e-01	k: 12126	n:120000
KS ci ratio: 1.113805e-01	ci left: 9.647296e-03	ci right 1.079323e-02	k: 1225	n:120000
ABI3   120000 perm   26 sec   (4615 perm/sec)   p_kst 1.020833e-02   p_cons 1.010500e-01   p_joint 1.368333e-02

Joint ci ratio: 1.015567e-01	ci left: 1.075499e-02	ci right 1.191311e-02	k: 1472	n:130000
Cons ci ratio: 3.246250e-02	ci left: 9.921432e-02	ci right 1.024958e-01	k: 13110	n:130000
KS ci ratio: 1.067743e-01	ci left: 9.713322e-03	ci right 1.081638e-02	k: 1333	n:130000
ABI3   130000 perm   29 sec   (4536 perm/sec)   p_kst 1.025385e-02   p_cons 1.008462e-01   p_joint 1.132308e-02

Joint ci ratio: 9.740726e-02	ci left: 1.087836e-02	ci right 1.199916e-02	k: 1600	n:140000
Cons ci ratio: 3.122333e-02	ci left: 9.961070e-02	ci right 1.027773e-01	k: 14166	n:140000
KS ci ratio: 1.025166e-01	ci left: 9.805558e-03	ci right 1.087201e-02	k: 1446	n:140000
ABI3   140000 perm   31 sec   (4461 perm/sec)   p_kst 1.032857e-02   p_cons 1.011857e-01   p_joint 1.142857e-02

Joint ci ratio: 1.847185e-01	ci left: 2.716828e-03	ci right 3.275990e-03	k: 448	n:150000
Cons ci ratio: 3.019774e-02	ci left: 9.946624e-02	ci right 1.025225e-01	k: 15148	n:150000
KS ci ratio: 9.841245e-02	ci left: 9.951291e-03	ci right 1.098776e-02	k: 1569	n:150000
ABI3   150000 perm   34 sec   (4390 perm/sec)   p_kst 1.046000e-02   p_cons 1.009867e-01   p_joint 2.986667e-03

Joint ci ratio: 1.112502e-01	ci left: 7.271430e-03	ci right 8.134052e-03	k: 1231	n:160000
Cons ci ratio: 2.926396e-02	ci left: 9.935998e-02	ci right 1.023170e-01	k: 16133	n:160000
KS ci ratio: 9.513449e-02	ci left: 1.000021e-02	ci right 1.100515e-02	k: 1679	n:160000
ABI3   160000 perm   37 sec   (4317 perm/sec)   p_kst 1.049375e-02   p_cons 1.008312e-01   p_joint 7.693750e-03

Joint ci ratio: 1.728104e-01	ci left: 2.756848e-03	ci right 3.283856e-03	k: 512	n:170000
Cons ci ratio: 2.844226e-02	ci left: 9.907463e-02	ci right 1.019390e-01	k: 17085	n:170000
KS ci ratio: 9.242494e-02	ci left: 9.986397e-03	ci right 1.095982e-02	k: 1779	n:170000
ABI3   170000 perm   40 sec   (4255 perm/sec)   p_kst 1.046471e-02   p_cons 1.005000e-01   p_joint 3.011765e-03

Joint ci ratio: 1.670457e-01	ci left: 2.795190e-03	ci right 3.309910e-03	k: 548	n:180000
Cons ci ratio: 2.760958e-02	ci left: 9.931898e-02	ci right 1.021050e-01	k: 18127	n:180000
KS ci ratio: 8.986202e-02	ci left: 9.990777e-03	ci right 1.093620e-02	k: 1882	n:180000
ABI3   180000 perm   43 sec   (4194 perm/sec)   p_kst 1.045556e-02   p_cons 1.007056e-01   p_joint 3.044444e-03

Joint ci ratio: 8.417988e-02	ci left: 1.080895e-02	ci right 1.176394e-02	k: 2143	n:190000
Cons ci ratio: 2.687562e-02	ci left: 9.933988e-02	ci right 1.020513e-01	k: 19131	n:190000
KS ci ratio: 8.754568e-02	ci left: 9.984732e-03	ci right 1.090398e-02	k: 1983	n:190000
ABI3   190000 perm   46 sec   (4134 perm/sec)   p_kst 1.043684e-02   p_cons 1.006895e-01   p_joint 1.127895e-02

Outputting figure to mutsig2_images.part000000000001/ABI3.2_1133_190000_0.010437_0.10069_0.011279.png
                gene_name: ABI3
               theta_stop: 0.088 
                    nperm: 190000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0100 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000001
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 1 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9893793: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000002> was used as the working directory.
Started at Fri Oct  5 23:50:55 2012
Results reported at Sat Oct  6 02:38:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000002.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000002.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 2  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000002.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10048.25 sec.
    Max Memory :      3604 MB
    Max Swap   :      6043 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
2
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 2
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 2: processing genes 91 - 180
Calculating significance of each gene.
Using projection method.
91	ABI3BP	3.037156e-01
92	ABL1	8.360828e-01
93	ABL2	1.443446e-01
94	ABLIM1	2.000782e-01
95	ABLIM2	3.680367e-01
96	ABLIM3	2.269679e-01
97	ABO	8.424474e-01
98	ABP1	9.741888e-01
99	ABR	6.268426e-01
100	ABRA	2.080704e-02
101	ABT1	3.366932e-01
102	ABTB1	6.288354e-01
103	ABTB2	9.942656e-01
104	ACAA1	5.166828e-01
105	ACAA2	5.904264e-01
106	ACACA	4.162294e-01
107	ACACB	6.816924e-01
108	ACAD10	8.011599e-01
109	ACAD11	3.401948e-01
110	ACAD8	9.179382e-01
111	ACAD9	2.383720e-01
112	ACADL	3.618710e-01
113	ACADM	9.381665e-02
114	ACADS	1
115	ACADSB	1.295243e-01
116	ACADVL	8.550934e-01
117	ACAN	5.063309e-01
118	ACAP1	6.935281e-01
119	ACAP2	8.036405e-01
120	ACAP3	1
121	ACAT1	7.097047e-01
122	ACAT2	6.040900e-01
123	ACBD3	1.326357e-01
124	ACBD4	1
125	ACBD5	6.168748e-01
126	ACBD6	3.750402e-01
127	ACBD7	1
128	ACCN1	1.095666e-01
129	ACCN2	9.660122e-01
130	ACCN3	1.109914e-01
131	ACCN4	7.695497e-01
132	ACCN5	1.362395e-01
133	ACCS	2.480248e-02
134	ACCSL	6.261244e-01
135	ACD	8.612671e-01
136	ACE	9.773603e-01
137	ACE2	1.543043e-01
138	ACER1	1.336922e-01
139	ACER2	5.596276e-01
140	ACER3	1
141	ACHE	8.026217e-01
142	ACIN1	4.235788e-01
143	ACLY	8.859411e-01
144	ACMSD	4.446465e-02
145	ACN9	5.657088e-01
146	ACO1	4.138909e-01
147	ACO2	8.730667e-01
148	ACOT1	4.189502e-01
149	ACOT11	7.925283e-01
150	ACOT12	2.331732e-02
151	ACOT13	1.900565e-01
152	ACOT2	9.162361e-01
153	ACOT4	4.280590e-02
154	ACOT6	3.104065e-01
155	ACOT7	8.232169e-01
156	ACOT8	2.339559e-01
157	ACOT9	5.807430e-01
158	ACOX1	3.920936e-01
159	ACOX2	7.090236e-01
160	ACOX3	1.832297e-01
161	ACOXL	8.081441e-01
162	ACP1	6.601540e-01
163	ACP2	7.260597e-01
164	ACP5	8.061439e-01
165	ACP6	1
166	ACPL2	1.173288e-01
167	ACPP	1.384757e-01
168	ACPT	1
169	ACR	3.722149e-01
170	ACRBP	3.866571e-01
171	ACRC	4.138990e-01
172	ACRV1	2.060920e-01
173	ACSBG1	4.610290e-01
174	ACSBG2	4.869805e-02
175	ACSF2	1
176	ACSF3	1
177	ACSL1	8.949497e-01
178	ACSL3	2.552679e-01
179	ACSL4	2.196299e-01
180	ACSL5	1.808768e-01
Done

Running MutSig 2:
Scatter job 2: processing genes 91 - 180
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ACACA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.859582e-02	ci left: 3.845045e-01	ci right 4.037572e-01	k: 3941	n:10000
Cons ci ratio: 3.444763e-02	ci left: 5.544138e-01	ci right 5.739488e-01	k: 5642	n:10000
KS ci ratio: 6.404922e-02	ci left: 2.636916e-01	ci right 2.812411e-01	k: 2724	n:10000
ACACA   10000 perm   3 sec   (3481 perm/sec)   p_kst 2.724000e-01   p_cons 5.642000e-01   p_joint 3.941000e-01

Outputting figure to mutsig2_images.part000000000002/ACACA.18_7433_10000_0.2724_0.5642_0.3941.png
                gene_name: ACACA
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 1 percent done.
ACACB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.499402e-02	ci left: 1.385451e-01	ci right 1.524621e-01	k: 1454	n:10000
Cons ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
KS ci ratio: 3.097963e-02	ci left: 6.058827e-01	ci right 6.250500e-01	k: 6155	n:10000
ACACB   10000 perm   2 sec   (4360 perm/sec)   p_kst 6.155000e-01   p_cons 4.660000e-02   p_joint 1.454000e-01

Joint ci ratio: 5.860587e-02	ci left: 1.774154e-01	ci right 1.881770e-01	k: 3655	n:20000
Cons ci ratio: 1.179307e-01	ci left: 4.925481e-02	ci right 5.547615e-02	k: 1046	n:20000
KS ci ratio: 2.152926e-02	ci left: 6.169433e-01	ci right 6.304207e-01	k: 12474	n:20000
ACACB   20000 perm   5 sec   (4029 perm/sec)   p_kst 6.237000e-01   p_cons 5.230000e-02   p_joint 1.827500e-01

Joint ci ratio: 5.155602e-02	ci left: 1.573851e-01	ci right 1.657472e-01	k: 4846	n:30000
Cons ci ratio: 9.525516e-02	ci left: 5.088254e-02	ci right 5.600438e-02	k: 1602	n:30000
KS ci ratio: 1.762257e-02	ci left: 6.170196e-01	ci right 6.280233e-01	k: 18676	n:30000
ACACB   30000 perm   8 sec   (3895 perm/sec)   p_kst 6.225333e-01   p_cons 5.340000e-02   p_joint 1.615333e-01

Outputting figure to mutsig2_images.part000000000002/ACACB.15_7585_30000_0.62253_0.0534_0.16153.png
                gene_name: ACACB
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 3 percent done.
ACAN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.610433e-02	ci left: 4.098026e-01	ci right 4.292443e-01	k: 4195	n:10000
Cons ci ratio: 1.927568e-02	ci left: 7.974007e-01	ci right 8.130211e-01	k: 8053	n:10000
KS ci ratio: 6.577260e-02	ci left: 2.534019e-01	ci right 2.707369e-01	k: 2620	n:10000
ACAN   10000 perm   2 sec   (4172 perm/sec)   p_kst 2.620000e-01   p_cons 8.053000e-01   p_joint 4.195000e-01

Outputting figure to mutsig2_images.part000000000002/ACAN.13_7661_10000_0.262_0.8053_0.4195.png
                gene_name: ACAN
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 4 percent done.
ABI3BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
Cons ci ratio: 5.058591e-02	ci left: 3.655984e-01	ci right 3.846744e-01	k: 3751	n:10000
KS ci ratio: 1.366775e-01	ci left: 7.078334e-02	ci right 8.126524e-02	k: 759	n:10000
ABI3BP   10000 perm   2 sec   (6033 perm/sec)   p_kst 7.590000e-02   p_cons 3.751000e-01   p_joint 4.060000e-02

Joint ci ratio: 7.812633e-02	ci left: 1.074153e-01	ci right 1.161980e-01	k: 2235	n:20000
Cons ci ratio: 3.639554e-02	ci left: 3.603647e-01	ci right 3.737740e-01	k: 7341	n:20000
KS ci ratio: 9.467332e-02	ci left: 7.520025e-02	ci right 8.272270e-02	k: 1578	n:20000
ABI3BP   20000 perm   4 sec   (5404 perm/sec)   p_kst 7.890000e-02   p_cons 3.670500e-01   p_joint 1.117500e-01

Outputting figure to mutsig2_images.part000000000002/ABI3BP.10_3368_20000_0.0789_0.36705_0.11175.png
                gene_name: ABI3BP
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 6 percent done.
ACCS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.286102e-02	ci left: 7.375496e-01	ci right 7.547068e-01	k: 7462	n:10000
Cons ci ratio: 3.425892e-02	ci left: 5.571200e-01	ci right 5.766410e-01	k: 5669	n:10000
KS ci ratio: 3.292450e-02	ci left: 5.765733e-01	ci right 5.959764e-01	k: 5863	n:10000
ACCS   10000 perm   2 sec   (6403 perm/sec)   p_kst 5.863000e-01   p_cons 5.669000e-01   p_joint 7.462000e-01

Outputting figure to mutsig2_images.part000000000002/ACCS.10_1562_10000_0.5863_0.5669_0.7462.png
                gene_name: ACCS
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 7 percent done.
ACE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.751786e-02	ci left: 1.322754e-01	ci right 1.459356e-01	k: 1390	n:10000
Cons ci ratio: 2.199211e-02	ci left: 7.521113e-01	ci right 7.689367e-01	k: 7606	n:10000
KS ci ratio: 1.557042e-01	ci left: 5.494237e-02	ci right 6.431621e-02	k: 595	n:10000
ACE2   10000 perm   2 sec   (6053 perm/sec)   p_kst 5.950000e-02   p_cons 7.606000e-01   p_joint 1.390000e-01

Joint ci ratio: 7.341911e-02	ci left: 1.201511e-01	ci right 1.293583e-01	k: 2494	n:20000
Cons ci ratio: 1.559565e-02	ci left: 7.535648e-01	ci right 7.654597e-01	k: 15191	n:20000
KS ci ratio: 1.099059e-01	ci left: 5.650427e-02	ci right 6.312442e-02	k: 1195	n:20000
ACE2   20000 perm   4 sec   (5455 perm/sec)   p_kst 5.975000e-02   p_cons 7.595500e-01   p_joint 1.247000e-01

Joint ci ratio: 5.661882e-02	ci left: 1.338522e-01	ci right 1.416848e-01	k: 4132	n:30000
Cons ci ratio: 1.267629e-02	ci left: 7.563337e-01	ci right 7.660157e-01	k: 22836	n:30000
KS ci ratio: 9.016690e-02	ci left: 5.658822e-02	ci right 6.196420e-02	k: 1777	n:30000
ACE2   30000 perm   6 sec   (5225 perm/sec)   p_kst 5.923333e-02   p_cons 7.612000e-01   p_joint 1.377333e-01

Outputting figure to mutsig2_images.part000000000002/ACE2.9_2490_30000_0.059233_0.7612_0.13773.png
                gene_name: ACE2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 9 percent done.
ACOT12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.890004e-02	ci left: 8.035925e-01	ci right 8.190257e-01	k: 8114	n:10000
Cons ci ratio: 1.873320e-02	ci left: 8.063342e-01	ci right 8.216825e-01	k: 8141	n:10000
KS ci ratio: 3.397380e-02	ci left: 5.612300e-01	ci right 5.807287e-01	k: 5710	n:10000
ACOT12   10000 perm   2 sec   (6019 perm/sec)   p_kst 5.710000e-01   p_cons 8.141000e-01   p_joint 8.114000e-01

Outputting figure to mutsig2_images.part000000000002/ACOT12.9_1728_10000_0.571_0.8141_0.8114.png
                gene_name: ACOT12
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 10 percent done.
ACSBG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.164895e-02	ci left: 3.559523e-01	ci right 3.749262e-01	k: 3654	n:10000
Cons ci ratio: 2.731636e-02	ci left: 6.638068e-01	ci right 6.822923e-01	k: 6731	n:10000
KS ci ratio: 6.499942e-02	ci left: 2.579524e-01	ci right 2.753837e-01	k: 2666	n:10000
ACSBG2   10000 perm   2 sec   (5920 perm/sec)   p_kst 2.666000e-01   p_cons 6.731000e-01   p_joint 3.654000e-01

Outputting figure to mutsig2_images.part000000000002/ACSBG2.8_2053_10000_0.2666_0.6731_0.3654.png
                gene_name: ACSBG2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 12 percent done.
ABL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.530342e-02	ci left: 2.051084e-01	ci right 2.212590e-01	k: 2131	n:10000
Cons ci ratio: 7.035355e-02	ci left: 2.284954e-01	ci right 2.452581e-01	k: 2368	n:10000
KS ci ratio: 9.829904e-02	ci left: 1.304150e-01	ci right 1.439971e-01	k: 1371	n:10000
ABL2   10000 perm   2 sec   (5461 perm/sec)   p_kst 1.371000e-01   p_cons 2.368000e-01   p_joint 2.131000e-01

Outputting figure to mutsig2_images.part000000000002/ABL2.7_3758_10000_0.1371_0.2368_0.2131.png
                gene_name: ABL2
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 13 percent done.
ACCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.715515e-02	ci left: 6.664250e-01	ci right 6.848726e-01	k: 6757	n:10000
KS ci ratio: 1.906652e-02	ci left: 8.008515e-01	ci right 8.163683e-01	k: 8087	n:10000
ACCN1   10000 perm   2 sec   (5921 perm/sec)   p_kst 8.087000e-01   p_cons 6.757000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACCN1.7_2291_10000_0.8087_0.6757_1.png
                gene_name: ACCN1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
ACIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.569957e-03	ci left: 9.773822e-01	ci right 9.829331e-01	k: 9803	n:10000
Cons ci ratio: 2.604643e-02	ci left: 6.845600e-01	ci right 7.027271e-01	k: 6937	n:10000
KS ci ratio: 1.242968e-02	ci left: 9.028849e-01	ci right 9.142758e-01	k: 9087	n:10000
ACIN1   10000 perm   2 sec   (5507 perm/sec)   p_kst 9.087000e-01   p_cons 6.937000e-01   p_joint 9.803000e-01

Outputting figure to mutsig2_images.part000000000002/ACIN1.7_4249_10000_0.9087_0.6937_0.9803.png
                gene_name: ACIN1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 16 percent done.
ACOX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.015846e-01	ci left: 1.229780e-01	ci right 1.362386e-01	k: 1295	n:10000
Cons ci ratio: 3.432174e-02	ci left: 5.562179e-01	ci right 5.757437e-01	k: 5660	n:10000
KS ci ratio: 2.225082e-01	ci left: 2.674401e-02	ci right 3.353336e-02	k: 300	n:10000
ACOX3   10000 perm   2 sec   (5848 perm/sec)   p_kst 3.000000e-02   p_cons 5.660000e-01   p_joint 1.295000e-01

Joint ci ratio: 7.605461e-02	ci left: 1.127730e-01	ci right 1.217386e-01	k: 2344	n:20000
Cons ci ratio: 2.440675e-02	ci left: 5.563424e-01	ci right 5.701392e-01	k: 11265	n:20000
KS ci ratio: 1.602456e-01	ci left: 2.671804e-02	ci right 3.142021e-02	k: 580	n:20000
ACOX3   20000 perm   4 sec   (5091 perm/sec)   p_kst 2.900000e-02   p_cons 5.632500e-01   p_joint 1.172000e-01

Joint ci ratio: 7.211147e-02	ci left: 8.642407e-02	ci right 9.292231e-02	k: 2689	n:30000
Cons ci ratio: 1.889440e-02	ci left: 5.836745e-01	ci right 5.948415e-01	k: 17678	n:30000
KS ci ratio: 1.307252e-01	ci left: 2.719472e-02	ci right 3.103053e-02	k: 872	n:30000
ACOX3   30000 perm   6 sec   (4925 perm/sec)   p_kst 2.906667e-02   p_cons 5.892667e-01   p_joint 8.963333e-02

Joint ci ratio: 7.196690e-02	ci left: 6.655963e-02	ci right 7.155315e-02	k: 2761	n:40000
Cons ci ratio: 1.638488e-02	ci left: 5.837839e-01	ci right 5.934532e-01	k: 23545	n:40000
KS ci ratio: 1.121738e-01	ci left: 2.796083e-02	ci right 3.130791e-02	k: 1184	n:40000
ACOX3   40000 perm   8 sec   (4836 perm/sec)   p_kst 2.960000e-02   p_cons 5.886250e-01   p_joint 6.902500e-02

Joint ci ratio: 5.912849e-02	ci left: 7.840589e-02	ci right 8.320291e-02	k: 4039	n:50000
Cons ci ratio: 1.465774e-02	ci left: 5.842116e-01	ci right 5.928581e-01	k: 29427	n:50000
KS ci ratio: 1.005855e-01	ci left: 2.799524e-02	ci right 3.097972e-02	k: 1473	n:50000
ACOX3   50000 perm   11 sec   (4752 perm/sec)   p_kst 2.946000e-02   p_cons 5.885400e-01   p_joint 8.078000e-02

Joint ci ratio: 6.366299e-02	ci left: 5.753810e-02	ci right 6.133799e-02	k: 3565	n:60000
Cons ci ratio: 1.362543e-02	ci left: 5.757717e-01	ci right 5.836873e-01	k: 34784	n:60000
KS ci ratio: 9.157664e-02	ci left: 2.827465e-02	ci right 3.100444e-02	k: 1777	n:60000
ACOX3   60000 perm   13 sec   (4668 perm/sec)   p_kst 2.961667e-02   p_cons 5.797333e-01   p_joint 5.941667e-02

Outputting figure to mutsig2_images.part000000000002/ACOX3.7_2171_60000_0.029617_0.57973_0.059417.png
                gene_name: ACOX3
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.061 

Current progress: 18 percent done.
ACSBG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.786775e-02	ci left: 8.204583e-01	ci right 8.353502e-01	k: 8280	n:10000
Cons ci ratio: 4.500499e-02	ci left: 4.215643e-01	ci right 4.410757e-01	k: 4313	n:10000
KS ci ratio: 2.777680e-02	ci left: 6.563567e-01	ci right 6.749467e-01	k: 6657	n:10000
ACSBG1   10000 perm   2 sec   (5886 perm/sec)   p_kst 6.657000e-01   p_cons 4.313000e-01   p_joint 8.280000e-01

Outputting figure to mutsig2_images.part000000000002/ACSBG1.7_2231_10000_0.6657_0.4313_0.828.png
                gene_name: ACSBG1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 19 percent done.
ABLIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.901581e-02	ci left: 1.896376e-01	ci right 2.053390e-01	k: 1974	n:10000
Cons ci ratio: 3.474272e-02	ci left: 5.502047e-01	ci right 5.697603e-01	k: 5600	n:10000
KS ci ratio: 1.061000e-01	ci left: 1.136922e-01	ci right 1.265300e-01	k: 1200	n:10000
ABLIM1   10000 perm   2 sec   (5993 perm/sec)   p_kst 1.200000e-01   p_cons 5.600000e-01   p_joint 1.974000e-01

Joint ci ratio: 4.941996e-02	ci left: 2.333506e-01	ci right 2.452253e-01	k: 4785	n:20000
Cons ci ratio: 2.453846e-02	ci left: 5.536882e-01	ci right 5.674942e-01	k: 11212	n:20000
KS ci ratio: 7.396201e-02	ci left: 1.185766e-01	ci right 1.277333e-01	k: 2462	n:20000
ABLIM1   20000 perm   4 sec   (5427 perm/sec)   p_kst 1.231000e-01   p_cons 5.606000e-01   p_joint 2.392500e-01

Outputting figure to mutsig2_images.part000000000002/ABLIM1.6_2581_20000_0.1231_0.5606_0.23925.png
                gene_name: ABLIM1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 21 percent done.
ACADM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.789393e-02	ci left: 1.585590e-01	ci right 1.732362e-01	k: 1658	n:10000
Cons ci ratio: 2.827121e-02	ci left: 6.484061e-01	ci right 6.671019e-01	k: 6578	n:10000
KS ci ratio: 1.192588e-01	ci left: 9.165653e-02	ci right 1.033791e-01	k: 974	n:10000
ACADM   10000 perm   2 sec   (6220 perm/sec)   p_kst 9.740000e-02   p_cons 6.578000e-01   p_joint 1.658000e-01

Joint ci ratio: 4.865181e-02	ci left: 2.390518e-01	ci right 2.510224e-01	k: 4900	n:20000
Cons ci ratio: 1.984302e-02	ci left: 6.545422e-01	ci right 6.677109e-01	k: 13223	n:20000
KS ci ratio: 8.359604e-02	ci left: 9.489433e-02	ci right 1.032226e-01	k: 1980	n:20000
ACADM   20000 perm   4 sec   (5657 perm/sec)   p_kst 9.900000e-02   p_cons 6.611500e-01   p_joint 2.450000e-01

Outputting figure to mutsig2_images.part000000000002/ACADM.6_1326_20000_0.099_0.66115_0.245.png
                gene_name: ACADM
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 22 percent done.
ACCN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.298919e-03	ci left: 9.422194e-01	ci right 9.511181e-01	k: 9468	n:10000
KS ci ratio: 1.883211e-02	ci left: 8.047094e-01	ci right 8.201081e-01	k: 8125	n:10000
ACCN5   10000 perm   2 sec   (6513 perm/sec)   p_kst 8.125000e-01   p_cons 9.468000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACCN5.6_1558_10000_0.8125_0.9468_1.png
                gene_name: ACCN5
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
ACRBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.428240e-03	ci left: 9.705838e-01	ci right 9.769362e-01	k: 9739	n:10000
KS ci ratio: 1.448544e-02	ci left: 8.733677e-01	ci right 8.862101e-01	k: 8799	n:10000
ACRBP   10000 perm   2 sec   (6277 perm/sec)   p_kst 8.799000e-01   p_cons 9.739000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACRBP.6_1672_10000_0.8799_0.9739_1.png
                gene_name: ACRBP
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
ACSL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.568697e-02	ci left: 8.550847e-01	ci right 8.687038e-01	k: 8620	n:10000
Cons ci ratio: 2.565491e-02	ci left: 6.910118e-01	ci right 7.090715e-01	k: 7001	n:10000
KS ci ratio: 2.017470e-02	ci left: 7.824912e-01	ci right 7.985392e-01	k: 7906	n:10000
ACSL3   10000 perm   2 sec   (6170 perm/sec)   p_kst 7.906000e-01   p_cons 7.001000e-01   p_joint 8.620000e-01

Outputting figure to mutsig2_images.part000000000002/ACSL3.6_2219_10000_0.7906_0.7001_0.862.png
                gene_name: ACSL3
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 27 percent done.
ABLIM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.206990e-02	ci left: 5.893165e-01	ci right 6.086258e-01	k: 5990	n:10000
Cons ci ratio: 5.829190e-02	ci left: 3.022309e-01	ci right 3.204791e-01	k: 3113	n:10000
KS ci ratio: 3.298561e-02	ci left: 5.756705e-01	ci right 5.950798e-01	k: 5854	n:10000
ABLIM3   10000 perm   2 sec   (6218 perm/sec)   p_kst 5.854000e-01   p_cons 3.113000e-01   p_joint 5.990000e-01

Outputting figure to mutsig2_images.part000000000002/ABLIM3.5_2144_10000_0.5854_0.3113_0.599.png
                gene_name: ABLIM3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 28 percent done.
ABRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.050926e-02	ci left: 7.769169e-01	ci right 7.931167e-01	k: 7851	n:10000
KS ci ratio: 2.382713e-02	ci left: 7.213844e-01	ci right 7.388814e-01	k: 7302	n:10000
ABRA   10000 perm   1 sec   (6959 perm/sec)   p_kst 7.302000e-01   p_cons 7.851000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ABRA.5_1154_10000_0.7302_0.7851_1.png
                gene_name: ABRA
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
ACAD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.300748e-02	ci left: 4.439070e-01	ci right 4.635200e-01	k: 4537	n:10000
Cons ci ratio: 4.654243e-02	ci left: 4.052191e-01	ci right 4.246305e-01	k: 4149	n:10000
KS ci ratio: 5.695986e-02	ci left: 3.121506e-01	ci right 3.305536e-01	k: 3213	n:10000
ACAD11   10000 perm   1 sec   (6945 perm/sec)   p_kst 3.213000e-01   p_cons 4.149000e-01   p_joint 4.537000e-01

Outputting figure to mutsig2_images.part000000000002/ACAD11.5_2423_10000_0.3213_0.4149_0.4537.png
                gene_name: ACAD11
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 31 percent done.
ACAD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.981450e-03	ci left: 9.815599e-01	ci right 9.865523e-01	k: 9842	n:10000
Cons ci ratio: 2.307825e-02	ci left: 7.339111e-01	ci right 7.511474e-01	k: 7426	n:10000
KS ci ratio: 1.878885e-02	ci left: 8.054202e-01	ci right 8.207969e-01	k: 8132	n:10000
ACAD9   10000 perm   2 sec   (6376 perm/sec)   p_kst 8.132000e-01   p_cons 7.426000e-01   p_joint 9.842000e-01

Outputting figure to mutsig2_images.part000000000002/ACAD9.5_1938_10000_0.8132_0.7426_0.9842.png
                gene_name: ACAD9
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 33 percent done.
ACADSB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.725901e-02	ci left: 5.154566e-01	ci right 5.351287e-01	k: 5253	n:10000
Cons ci ratio: 5.906185e-02	ci left: 2.966780e-01	ci right 3.148353e-01	k: 3057	n:10000
KS ci ratio: 3.327177e-02	ci left: 5.714578e-01	ci right 5.908949e-01	k: 5812	n:10000
ACADSB   10000 perm   2 sec   (6305 perm/sec)   p_kst 5.812000e-01   p_cons 3.057000e-01   p_joint 5.253000e-01

Outputting figure to mutsig2_images.part000000000002/ACADSB.5_1343_10000_0.5812_0.3057_0.5253.png
                gene_name: ACADSB
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 34 percent done.
ACBD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.133230e-02	ci left: 1.807775e-01	ci right 1.962044e-01	k: 1884	n:10000
Cons ci ratio: 1.214091e-01	ci left: 8.864084e-02	ci right 1.001967e-01	k: 943	n:10000
KS ci ratio: 4.631317e-02	ci left: 4.076104e-01	ci right 4.270378e-01	k: 4173	n:10000
ACBD3   10000 perm   1 sec   (6821 perm/sec)   p_kst 4.173000e-01   p_cons 9.430000e-02   p_joint 1.884000e-01

Joint ci ratio: 5.294060e-02	ci left: 2.094222e-01	ci right 2.208608e-01	k: 4302	n:20000
Cons ci ratio: 8.771001e-02	ci left: 8.680364e-02	ci right 9.481578e-02	k: 1815	n:20000
KS ci ratio: 3.290673e-02	ci left: 4.081591e-01	ci right 4.218656e-01	k: 8300	n:20000
ACBD3   20000 perm   3 sec   (6061 perm/sec)   p_kst 4.150000e-01   p_cons 9.075000e-02   p_joint 2.151000e-01

Outputting figure to mutsig2_images.part000000000002/ACBD3.5_1619_20000_0.415_0.09075_0.2151.png
                gene_name: ACBD3
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 36 percent done.
ACPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.434968e-02	ci left: 5.558170e-01	ci right 5.753448e-01	k: 5656	n:10000
Cons ci ratio: 5.664796e-02	ci left: 3.145320e-01	ci right 3.329708e-01	k: 3237	n:10000
KS ci ratio: 2.293946e-02	ci left: 7.362356e-01	ci right 7.534215e-01	k: 7449	n:10000
ACPL2   10000 perm   2 sec   (6509 perm/sec)   p_kst 7.449000e-01   p_cons 3.237000e-01   p_joint 5.656000e-01

Outputting figure to mutsig2_images.part000000000002/ACPL2.5_1463_10000_0.7449_0.3237_0.5656.png
                gene_name: ACPL2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 37 percent done.
ABL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.133596e-01	ci left: 1.007141e-01	ci right 1.129160e-01	k: 1067	n:10000
Cons ci ratio: 6.432495e-02	ci left: 2.620092e-01	ci right 2.795245e-01	k: 2707	n:10000
KS ci ratio: 1.196672e-01	ci left: 9.107270e-02	ci right 1.027633e-01	k: 968	n:10000
ABL1   10000 perm   2 sec   (5712 perm/sec)   p_kst 9.680000e-02   p_cons 2.707000e-01   p_joint 1.067000e-01

Joint ci ratio: 8.394926e-02	ci left: 9.415843e-02	ci right 1.024588e-01	k: 1965	n:20000
Cons ci ratio: 4.553101e-02	ci left: 2.642034e-01	ci right 2.765634e-01	k: 5407	n:20000
KS ci ratio: 8.170914e-02	ci left: 9.896761e-02	ci right 1.074481e-01	k: 2063	n:20000
ABL1   20000 perm   4 sec   (5226 perm/sec)   p_kst 1.031500e-01   p_cons 2.703500e-01   p_joint 9.825000e-02

Outputting figure to mutsig2_images.part000000000002/ABL1.4_3577_20000_0.10315_0.27035_0.09825.png
                gene_name: ABL1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.10 

Current progress: 39 percent done.
ABLIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.175058e-02	ci left: 7.561585e-01	ci right 7.728871e-01	k: 7646	n:10000
Cons ci ratio: 5.130555e-02	ci left: 3.590346e-01	ci right 3.780420e-01	k: 3685	n:10000
KS ci ratio: 2.299980e-02	ci left: 7.352249e-01	ci right 7.524328e-01	k: 7439	n:10000
ABLIM2   10000 perm   2 sec   (6389 perm/sec)   p_kst 7.439000e-01   p_cons 3.685000e-01   p_joint 7.646000e-01

Outputting figure to mutsig2_images.part000000000002/ABLIM2.4_2076_10000_0.7439_0.3685_0.7646.png
                gene_name: ABLIM2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 40 percent done.
ABR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.759937e-02	ci left: 1.320796e-01	ci right 1.457315e-01	k: 1388	n:10000
Cons ci ratio: 1.406212e-01	ci left: 6.700893e-02	ci right 7.724202e-02	k: 720	n:10000
KS ci ratio: 5.572947e-02	ci left: 3.216780e-01	ci right 3.402206e-01	k: 3309	n:10000
ABR   10000 perm   2 sec   (6005 perm/sec)   p_kst 3.309000e-01   p_cons 7.200000e-02   p_joint 1.388000e-01

Joint ci ratio: 6.589195e-02	ci left: 1.453734e-01	ci right 1.553285e-01	k: 3006	n:20000
Cons ci ratio: 9.150171e-02	ci left: 8.019134e-02	ci right 8.793009e-02	k: 1680	n:20000
KS ci ratio: 3.874868e-02	ci left: 3.318910e-01	ci right 3.450560e-01	k: 6769	n:20000
ABR   20000 perm   4 sec   (5453 perm/sec)   p_kst 3.384500e-01   p_cons 8.400000e-02   p_joint 1.503000e-01

Outputting figure to mutsig2_images.part000000000002/ABR.4_2811_20000_0.33845_0.084_0.1503.png
                gene_name: ABR
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 42 percent done.
ACAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.042345e-01	ci left: 1.174050e-01	ci right 1.304149e-01	k: 1238	n:10000
Cons ci ratio: 9.965007e-02	ci left: 1.272828e-01	ci right 1.407312e-01	k: 1339	n:10000
KS ci ratio: 8.984913e-02	ci left: 1.526681e-01	ci right 1.671306e-01	k: 1598	n:10000
ACAP2   10000 perm   2 sec   (6230 perm/sec)   p_kst 1.598000e-01   p_cons 1.339000e-01   p_joint 1.238000e-01

Joint ci ratio: 7.549048e-02	ci left: 1.142973e-01	ci right 1.233138e-01	k: 2375	n:20000
Cons ci ratio: 7.040380e-02	ci left: 1.294551e-01	ci right 1.389515e-01	k: 2683	n:20000
KS ci ratio: 6.348666e-02	ci left: 1.549932e-01	ci right 1.652058e-01	k: 3201	n:20000
ACAP2   20000 perm   4 sec   (5612 perm/sec)   p_kst 1.600500e-01   p_cons 1.341500e-01   p_joint 1.187500e-01

Outputting figure to mutsig2_images.part000000000002/ACAP2.4_2429_20000_0.16005_0.13415_0.11875.png
                gene_name: ACAP2
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 43 percent done.
ACCN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.602799e-02	ci left: 8.497808e-01	ci right 8.636107e-01	k: 8568	n:10000
Cons ci ratio: 4.756368e-02	ci left: 3.947600e-01	ci right 4.140957e-01	k: 4044	n:10000
KS ci ratio: 1.462208e-02	ci left: 8.713228e-01	ci right 8.842562e-01	k: 8779	n:10000
ACCN3   10000 perm   2 sec   (6373 perm/sec)   p_kst 8.779000e-01   p_cons 4.044000e-01   p_joint 8.568000e-01

Outputting figure to mutsig2_images.part000000000002/ACCN3.4_1755_10000_0.8779_0.4044_0.8568.png
                gene_name: ACCN3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 45 percent done.
ACCSL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.129536e-02	ci left: 9.180131e-01	ci right 9.285388e-01	k: 9234	n:10000
KS ci ratio: 2.975552e-02	ci left: 6.248728e-01	ci right 6.438489e-01	k: 6344	n:10000
ACCSL   10000 perm   2 sec   (6366 perm/sec)   p_kst 6.344000e-01   p_cons 9.234000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACCSL.4_1763_10000_0.6344_0.9234_1.png
                gene_name: ACCSL
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
ACER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.837355e-02	ci left: 1.921984e-01	ci right 2.079767e-01	k: 2000	n:10000
Cons ci ratio: 1.103741e-01	ci left: 1.057850e-01	ci right 1.182420e-01	k: 1119	n:10000
KS ci ratio: 3.618240e-02	ci left: 5.300710e-01	ci right 5.497057e-01	k: 5399	n:10000
ACER1   10000 perm   1 sec   (7370 perm/sec)   p_kst 5.399000e-01   p_cons 1.119000e-01   p_joint 2.000000e-01

Joint ci ratio: 4.811866e-02	ci left: 2.431179e-01	ci right 2.551551e-01	k: 4982	n:20000
Cons ci ratio: 7.955555e-02	ci left: 1.039271e-01	ci right 1.125872e-01	k: 2164	n:20000
KS ci ratio: 2.595699e-02	ci left: 5.258060e-01	ci right 5.396845e-01	k: 10655	n:20000
ACER1   20000 perm   3 sec   (6571 perm/sec)   p_kst 5.327500e-01   p_cons 1.082000e-01   p_joint 2.491000e-01

Outputting figure to mutsig2_images.part000000000002/ACER1.4_819_20000_0.53275_0.1082_0.2491.png
                gene_name: ACER1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 48 percent done.
ACLY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.414049e-02	ci left: 5.588240e-01	ci right 5.783360e-01	k: 5686	n:10000
KS ci ratio: 1.620383e-02	ci left: 8.470282e-01	ci right 8.609649e-01	k: 8541	n:10000
ACLY   10000 perm   2 sec   (5914 perm/sec)   p_kst 8.541000e-01   p_cons 5.686000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACLY.4_3418_10000_0.8541_0.5686_1.png
                gene_name: ACLY
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
ACMSD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.410615e-02	ci left: 8.789942e-01	ci right 8.915804e-01	k: 8854	n:10000
Cons ci ratio: 1.993082e-02	ci left: 7.865466e-01	ci right 8.024815e-01	k: 7946	n:10000
KS ci ratio: 4.532749e-02	ci left: 4.180751e-01	ci right 4.375670e-01	k: 4278	n:10000
ACMSD   10000 perm   1 sec   (7340 perm/sec)   p_kst 4.278000e-01   p_cons 7.946000e-01   p_joint 8.854000e-01

Outputting figure to mutsig2_images.part000000000002/ACMSD.4_1051_10000_0.4278_0.7946_0.8854.png
                gene_name: ACMSD
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 51 percent done.
ACO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.481229e-02	ci left: 8.684609e-01	ci right 8.815198e-01	k: 8751	n:10000
Cons ci ratio: 3.484151e-02	ci left: 5.488018e-01	ci right 5.683640e-01	k: 5586	n:10000
KS ci ratio: 2.237835e-02	ci left: 7.456379e-01	ci right 7.626138e-01	k: 7542	n:10000
ACO1   10000 perm   2 sec   (6158 perm/sec)   p_kst 7.542000e-01   p_cons 5.586000e-01   p_joint 8.751000e-01

Outputting figure to mutsig2_images.part000000000002/ACO1.4_2750_10000_0.7542_0.5586_0.8751.png
                gene_name: ACO1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 52 percent done.
ACPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.193266e-01	ci left: 9.155922e-02	ci right 1.032765e-01	k: 973	n:10000
Cons ci ratio: 1.016190e-02	ci left: 9.321629e-01	ci right 9.417806e-01	k: 9371	n:10000
KS ci ratio: 2.589536e-01	ci left: 1.949575e-02	ci right 2.538701e-02	k: 223	n:10000
ACPP   10000 perm   1 sec   (6739 perm/sec)   p_kst 2.230000e-02   p_cons 9.371000e-01   p_joint 9.730000e-02

Joint ci ratio: 1.161276e-01	ci left: 5.076176e-02	ci right 5.706873e-02	k: 1077	n:20000
Cons ci ratio: 7.036159e-03	ci left: 9.361065e-01	ci right 9.427651e-01	k: 18790	n:20000
KS ci ratio: 1.892528e-01	ci left: 1.901003e-02	ci right 2.303092e-02	k: 419	n:20000
ACPP   20000 perm   3 sec   (5895 perm/sec)   p_kst 2.095000e-02   p_cons 9.395000e-01   p_joint 5.385000e-02

Joint ci ratio: 1.110656e-01	ci left: 3.764831e-02	ci right 4.210802e-02	k: 1195	n:30000
Cons ci ratio: 6.023836e-03	ci left: 9.309956e-01	ci right 9.366534e-01	k: 28016	n:30000
KS ci ratio: 1.542756e-01	ci left: 1.943940e-02	ci right 2.272093e-02	k: 631	n:30000
ACPP   30000 perm   5 sec   (5665 perm/sec)   p_kst 2.103333e-02   p_cons 9.338667e-01   p_joint 3.983333e-02

Joint ci ratio: 8.995183e-02	ci left: 4.328259e-02	ci right 4.738375e-02	k: 1812	n:40000
Cons ci ratio: 5.225697e-03	ci left: 9.311668e-01	ci right 9.360701e-01	k: 37346	n:40000
KS ci ratio: 1.329372e-01	ci left: 1.985904e-02	ci right 2.271105e-02	k: 850	n:40000
ACPP   40000 perm   7 sec   (5420 perm/sec)   p_kst 2.125000e-02   p_cons 9.336500e-01   p_joint 4.530000e-02

Joint ci ratio: 8.767859e-02	ci left: 3.675210e-02	ci right 4.014176e-02	k: 1921	n:50000
Cons ci ratio: 4.641739e-03	ci left: 9.322961e-01	ci right 9.366533e-01	k: 46725	n:50000
KS ci ratio: 1.189458e-01	ci left: 1.999405e-02	ci right 2.254195e-02	k: 1062	n:50000
ACPP   50000 perm   9 sec   (5268 perm/sec)   p_kst 2.124000e-02   p_cons 9.345000e-01   p_joint 3.842000e-02

Joint ci ratio: 7.988460e-02	ci left: 3.703992e-02	ci right 4.013825e-02	k: 2314	n:60000
Cons ci ratio: 4.233768e-03	ci left: 9.325923e-01	ci right 9.365655e-01	k: 56076	n:60000
KS ci ratio: 1.079613e-01	ci left: 2.033806e-02	ci right 2.267521e-02	k: 1289	n:60000
ACPP   60000 perm   12 sec   (5179 perm/sec)   p_kst 2.148333e-02   p_cons 9.346000e-01   p_joint 3.856667e-02

Joint ci ratio: 7.745384e-02	ci left: 3.393108e-02	ci right 3.667904e-02	k: 2470	n:70000
Cons ci ratio: 3.946151e-03	ci left: 9.319040e-01	ci right 9.356028e-01	k: 65364	n:70000
KS ci ratio: 1.000548e-01	ci left: 2.038250e-02	ci right 2.254313e-02	k: 1501	n:70000
ACPP   70000 perm   14 sec   (5087 perm/sec)   p_kst 2.144286e-02   p_cons 9.337714e-01   p_joint 3.528571e-02

Joint ci ratio: 6.685809e-02	ci left: 3.982085e-02	ci right 4.258755e-02	k: 3295	n:80000
Cons ci ratio: 3.569935e-03	ci left: 9.360916e-01	ci right 9.394516e-01	k: 75023	n:80000
KS ci ratio: 9.338651e-02	ci left: 2.054269e-02	ci right 2.256722e-02	k: 1723	n:80000
ACPP   80000 perm   16 sec   (5002 perm/sec)   p_kst 2.153750e-02   p_cons 9.377875e-01   p_joint 4.118750e-02

Outputting figure to mutsig2_images.part000000000002/ACPP.4_1324_80000_0.021538_0.93779_0.041188.png
                gene_name: ACPP
               theta_stop: 0.093 
                    nperm: 80000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.043 

Current progress: 54 percent done.
ACRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.141976e-02	ci left: 5.991544e-01	ci right 6.183822e-01	k: 6088	n:10000
Cons ci ratio: 1.706549e-02	ci left: 8.333784e-01	ci right 8.478226e-01	k: 8407	n:10000
KS ci ratio: 4.545732e-02	ci left: 4.166796e-01	ci right 4.361633e-01	k: 4264	n:10000
ACRC   10000 perm   2 sec   (6027 perm/sec)   p_kst 4.264000e-01   p_cons 8.407000e-01   p_joint 6.088000e-01

Outputting figure to mutsig2_images.part000000000002/ACRC.4_2124_10000_0.4264_0.8407_0.6088.png
                gene_name: ACRC
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 55 percent done.
ACSL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
Cons ci ratio: 6.476759e-02	ci left: 2.593375e-01	ci right 2.767978e-01	k: 2680	n:10000
KS ci ratio: 5.585553e-02	ci left: 3.206853e-01	ci right 3.392138e-01	k: 3299	n:10000
ACSL4   10000 perm   2 sec   (6097 perm/sec)   p_kst 3.299000e-01   p_cons 2.680000e-01   p_joint 3.885000e-01

Outputting figure to mutsig2_images.part000000000002/ACSL4.4_2192_10000_0.3299_0.268_0.3885.png
                gene_name: ACSL4
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 57 percent done.
ACSL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.250119e-02	ci left: 2.179321e-01	ci right 2.344277e-01	k: 2261	n:10000
Cons ci ratio: 1.342088e-01	ci left: 7.330186e-02	ci right 8.394515e-02	k: 785	n:10000
KS ci ratio: 2.611385e-02	ci left: 6.834513e-01	ci right 7.016364e-01	k: 6926	n:10000
ACSL5   10000 perm   2 sec   (6231 perm/sec)   p_kst 6.926000e-01   p_cons 7.850000e-02   p_joint 2.261000e-01

Joint ci ratio: 3.040731e-02	ci left: 4.468823e-01	ci right 4.607312e-01	k: 9076	n:20000
Cons ci ratio: 9.951067e-02	ci left: 6.840617e-02	ci right 7.561886e-02	k: 1439	n:20000
KS ci ratio: 1.856996e-02	ci left: 6.837391e-01	ci right 6.966056e-01	k: 13804	n:20000
ACSL5   20000 perm   4 sec   (5341 perm/sec)   p_kst 6.902000e-01   p_cons 7.195000e-02   p_joint 4.538000e-01

Outputting figure to mutsig2_images.part000000000002/ACSL5.4_2304_20000_0.6902_0.07195_0.4538.png
                gene_name: ACSL5
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 58 percent done.
ABT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.202335e-02	ci left: 4.553853e-01	ci right 4.750350e-01	k: 4652	n:10000
Cons ci ratio: 4.150350e-02	ci left: 4.615758e-01	ci right 4.812409e-01	k: 4714	n:10000
KS ci ratio: 7.056825e-02	ci left: 2.274091e-01	ci right 2.441451e-01	k: 2357	n:10000
ABT1   10000 perm   2 sec   (5809 perm/sec)   p_kst 2.357000e-01   p_cons 4.714000e-01   p_joint 4.652000e-01

Outputting figure to mutsig2_images.part000000000002/ABT1.3_831_10000_0.2357_0.4714_0.4652.png
                gene_name: ABT1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 60 percent done.
ACAD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.924324e-02	ci left: 2.342244e-01	ci right 2.511257e-01	k: 2426	n:10000
Cons ci ratio: 4.725902e-02	ci left: 3.978474e-01	ci right 4.172065e-01	k: 4075	n:10000
KS ci ratio: 7.543835e-02	ci left: 2.045169e-01	ci right 2.206509e-01	k: 2125	n:10000
ACAD10   10000 perm   2 sec   (6229 perm/sec)   p_kst 2.125000e-01   p_cons 4.075000e-01   p_joint 2.426000e-01

Outputting figure to mutsig2_images.part000000000002/ACAD10.3_3357_10000_0.2125_0.4075_0.2426.png
                gene_name: ACAD10
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 61 percent done.
ACAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.782131e-02	ci left: 3.921708e-01	ci right 4.114864e-01	k: 4018	n:10000
Cons ci ratio: 9.960716e-02	ci left: 1.273806e-01	ci right 1.408333e-01	k: 1340	n:10000
KS ci ratio: 3.157826e-02	ci left: 5.967448e-01	ci right 6.159932e-01	k: 6064	n:10000
ACAP1   10000 perm   2 sec   (6452 perm/sec)   p_kst 6.064000e-01   p_cons 1.340000e-01   p_joint 4.018000e-01

Outputting figure to mutsig2_images.part000000000002/ACAP1.3_2311_10000_0.6064_0.134_0.4018.png
                gene_name: ACAP1
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 63 percent done.
ACOT11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.847868e-02	ci left: 6.450858e-01	ci right 6.638241e-01	k: 6545	n:10000
KS ci ratio: 5.245524e-03	ci left: 9.797349e-01	ci right 9.849787e-01	k: 9825	n:10000
ACOT11   10000 perm   1 sec   (6711 perm/sec)   p_kst 9.825000e-01   p_cons 6.545000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACOT11.3_2052_10000_0.9825_0.6545_1.png
                gene_name: ACOT11
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
ACOT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.583643e-01	ci left: 1.958938e-02	ci right 2.549330e-02	k: 224	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
ACOT4   10000 perm   1 sec   (7442 perm/sec)   p_kst 1.000000e-04   p_cons 2.240000e-02   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 1.894834e-01	ci left: 1.896235e-02	ci right 2.297861e-02	k: 418	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
ACOT4   20000 perm   3 sec   (6644 perm/sec)   p_kst 5.000000e-05   p_cons 2.090000e-02   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 1.524378e-01	ci left: 1.992058e-02	ci right 2.323964e-02	k: 646	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
ACOT4   30000 perm   5 sec   (6333 perm/sec)   p_kst 3.333333e-05   p_cons 2.153333e-02   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 1.319895e-01	ci left: 2.014929e-02	ci right 2.302075e-02	k: 862	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
ACOT4   40000 perm   7 sec   (6118 perm/sec)   p_kst 2.500000e-05   p_cons 2.155000e-02   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 1.184910e-01	ci left: 2.014940e-02	ci right 2.270659e-02	k: 1070	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
ACOT4   50000 perm   8 sec   (5940 perm/sec)   p_kst 2.000000e-05   p_cons 2.140000e-02   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 1.132320e-01	ci left: 1.847336e-02	ci right 2.070678e-02	k: 1174	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
ACOT4   60000 perm   10 sec   (5787 perm/sec)   p_kst 1.666667e-05   p_cons 1.956667e-02   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 1.051000e-01	ci left: 1.846065e-02	ci right 2.052231e-02	k: 1363	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
ACOT4   70000 perm   12 sec   (5627 perm/sec)   p_kst 1.428571e-05   p_cons 1.947143e-02   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 9.316583e-02	ci left: 2.064040e-02	ci right 2.266949e-02	k: 1731	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
ACOT4   80000 perm   15 sec   (5504 perm/sec)   p_kst 1.250000e-05   p_cons 2.163750e-02   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 8.761957e-02	ci left: 2.080147e-02	ci right 2.271842e-02	k: 1957	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
ACOT4   90000 perm   17 sec   (5365 perm/sec)   p_kst 1.111111e-05   p_cons 2.174444e-02   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 8.321237e-02	ci left: 2.080584e-02	ci right 2.262205e-02	k: 2170	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
ACOT4   100000 perm   19 sec   (5266 perm/sec)   p_kst 1.000000e-05   p_cons 2.170000e-02   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 7.913860e-02	ci left: 2.095403e-02	ci right 2.268949e-02	k: 2399	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
ACOT4   110000 perm   21 sec   (5170 perm/sec)   p_kst 9.090909e-06   p_cons 2.180909e-02   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 7.583140e-02	ci left: 2.095664e-02	ci right 2.261658e-02	k: 2613	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
ACOT4   120000 perm   24 sec   (5079 perm/sec)   p_kst 8.333333e-06   p_cons 2.177500e-02   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 7.281487e-02	ci left: 2.101302e-02	ci right 2.260841e-02	k: 2834	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
ACOT4   130000 perm   26 sec   (4991 perm/sec)   p_kst 7.692308e-06   p_cons 2.180000e-02   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 7.033211e-02	ci left: 2.094313e-02	ci right 2.247677e-02	k: 3038	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
ACOT4   140000 perm   29 sec   (4907 perm/sec)   p_kst 7.142857e-06   p_cons 2.170000e-02   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 6.794806e-02	ci left: 2.096858e-02	ci right 2.244999e-02	k: 3255	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
ACOT4   150000 perm   31 sec   (4815 perm/sec)   p_kst 6.666667e-06   p_cons 2.170000e-02   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 6.586867e-02	ci left: 2.094243e-02	ci right 2.237498e-02	k: 3464	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
ACOT4   160000 perm   34 sec   (4736 perm/sec)   p_kst 6.250000e-06   p_cons 2.165000e-02   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 6.398700e-02	ci left: 2.090839e-02	ci right 2.229623e-02	k: 3671	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
ACOT4   170000 perm   36 sec   (4661 perm/sec)   p_kst 5.882353e-06   p_cons 2.159412e-02   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 6.232360e-02	ci left: 2.083488e-02	ci right 2.218059e-02	k: 3870	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
ACOT4   180000 perm   39 sec   (4588 perm/sec)   p_kst 5.555556e-06   p_cons 2.150000e-02   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 6.057848e-02	ci left: 2.090953e-02	ci right 2.222092e-02	k: 4096	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
ACOT4   190000 perm   42 sec   (4514 perm/sec)   p_kst 5.263158e-06   p_cons 2.155789e-02   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 5.888871e-02	ci left: 2.103632e-02	ci right 2.231760e-02	k: 4334	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
ACOT4   200000 perm   45 sec   (4446 perm/sec)   p_kst 5.000000e-06   p_cons 2.167000e-02   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 5.759736e-02	ci left: 2.095899e-02	ci right 2.220664e-02	k: 4531	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
ACOT4   210000 perm   48 sec   (4371 perm/sec)   p_kst 4.761905e-06   p_cons 2.157619e-02   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 5.622961e-02	ci left: 2.100554e-02	ci right 2.222530e-02	k: 4754	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
ACOT4   220000 perm   51 sec   (4306 perm/sec)   p_kst 4.545455e-06   p_cons 2.160909e-02   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 5.497182e-02	ci left: 2.103548e-02	ci right 2.222879e-02	k: 4974	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
ACOT4   230000 perm   54 sec   (4242 perm/sec)   p_kst 4.347826e-06   p_cons 2.162609e-02   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 5.388501e-02	ci left: 2.099331e-02	ci right 2.215995e-02	k: 5177	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
ACOT4   240000 perm   57 sec   (4182 perm/sec)   p_kst 4.166667e-06   p_cons 2.157083e-02   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 5.291047e-02	ci left: 2.091525e-02	ci right 2.205588e-02	k: 5370	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
ACOT4   250000 perm   61 sec   (4123 perm/sec)   p_kst 4.000000e-06   p_cons 2.148000e-02   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 5.185378e-02	ci left: 2.094969e-02	ci right 2.206870e-02	k: 5591	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
ACOT4   260000 perm   64 sec   (4064 perm/sec)   p_kst 3.846154e-06   p_cons 2.150385e-02   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 5.081331e-02	ci left: 2.101837e-02	ci right 2.211786e-02	k: 5822	n:270000
KS ci ratio: 2.263196e+00	ci left: 8.970727e-07	ci right 2.675784e-05	k: 2	n:270000
ACOT4   270000 perm   67 sec   (4006 perm/sec)   p_kst 7.407407e-06   p_cons 2.156296e-02   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 4.987518e-02	ci left: 2.104707e-02	ci right 2.212715e-02	k: 6043	n:280000
KS ci ratio: 2.263197e+00	ci left: 8.650343e-07	ci right 2.580222e-05	k: 2	n:280000
ACOT4   280000 perm   71 sec   (3941 perm/sec)   p_kst 7.142857e-06   p_cons 2.158214e-02   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 4.892733e-02	ci left: 2.112507e-02	ci right 2.218797e-02	k: 6279	n:290000
KS ci ratio: 2.263197e+00	ci left: 8.352055e-07	ci right 2.491249e-05	k: 2	n:290000
ACOT4   290000 perm   75 sec   (3887 perm/sec)   p_kst 6.896552e-06   p_cons 2.165172e-02   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 4.811841e-02	ci left: 2.112228e-02	ci right 2.216698e-02	k: 6492	n:300000
KS ci ratio: 2.263198e+00	ci left: 8.073653e-07	ci right 2.408208e-05	k: 2	n:300000
ACOT4   300000 perm   78 sec   (3836 perm/sec)   p_kst 6.666667e-06   p_cons 2.164000e-02   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 4.730149e-02	ci left: 2.116126e-02	ci right 2.218964e-02	k: 6718	n:310000
KS ci ratio: 2.263198e+00	ci left: 7.813212e-07	ci right 2.330525e-05	k: 2	n:310000
ACOT4   310000 perm   82 sec   (3786 perm/sec)   p_kst 6.451613e-06   p_cons 2.167097e-02   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 4.664165e-02	ci left: 2.109291e-02	ci right 2.210328e-02	k: 6910	n:320000
KS ci ratio: 2.263199e+00	ci left: 7.569049e-07	ci right 2.257696e-05	k: 2	n:320000
ACOT4   320000 perm   86 sec   (3737 perm/sec)   p_kst 6.250000e-06   p_cons 2.159375e-02   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 4.585713e-02	ci left: 2.116662e-02	ci right 2.216302e-02	k: 7148	n:330000
KS ci ratio: 1.959985e+00	ci left: 1.874768e-06	ci right 2.656726e-05	k: 3	n:330000
ACOT4   330000 perm   90 sec   (3682 perm/sec)   p_kst 9.090909e-06   p_cons 2.166061e-02   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 4.526145e-02	ci left: 2.109651e-02	ci right 2.207637e-02	k: 7338	n:340000
KS ci ratio: 1.959986e+00	ci left: 1.819628e-06	ci right 2.578588e-05	k: 3	n:340000
ACOT4   340000 perm   94 sec   (3635 perm/sec)   p_kst 8.823529e-06   p_cons 2.158235e-02   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 4.459465e-02	ci left: 2.111810e-02	ci right 2.208413e-02	k: 7559	n:350000
KS ci ratio: 1.959986e+00	ci left: 1.767638e-06	ci right 2.504915e-05	k: 3	n:350000
ACOT4   350000 perm   97 sec   (3591 perm/sec)   p_kst 8.571429e-06   p_cons 2.159714e-02   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 4.397381e-02	ci left: 2.112209e-02	ci right 2.207452e-02	k: 7774	n:360000
KS ci ratio: 1.959986e+00	ci left: 1.718537e-06	ci right 2.435334e-05	k: 3	n:360000
ACOT4   360000 perm   102 sec   (3546 perm/sec)   p_kst 8.333333e-06   p_cons 2.159444e-02   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 4.341709e-02	ci left: 2.108852e-02	ci right 2.202710e-02	k: 7975	n:370000
KS ci ratio: 1.959987e+00	ci left: 1.672090e-06	ci right 2.369515e-05	k: 3	n:370000
ACOT4   370000 perm   106 sec   (3504 perm/sec)   p_kst 8.108108e-06   p_cons 2.155405e-02   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 4.289708e-02	ci left: 2.104117e-02	ci right 2.196615e-02	k: 8170	n:380000
KS ci ratio: 1.753063e+00	ci left: 2.868074e-06	ci right 2.695133e-05	k: 4	n:380000
ACOT4   380000 perm   110 sec   (3462 perm/sec)   p_kst 1.052632e-05   p_cons 2.150000e-02   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 4.228953e-02	ci left: 2.110035e-02	ci right 2.201447e-02	k: 8406	n:390000
KS ci ratio: 1.753064e+00	ci left: 2.794533e-06	ci right 2.626027e-05	k: 4	n:390000
ACOT4   390000 perm   114 sec   (3419 perm/sec)   p_kst 1.025641e-05   p_cons 2.155385e-02   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 4.177630e-02	ci left: 2.108737e-02	ci right 2.198958e-02	k: 8614	n:400000
KS ci ratio: 1.753064e+00	ci left: 2.724670e-06	ci right 2.560377e-05	k: 4	n:400000
ACOT4   400000 perm   118 sec   (3378 perm/sec)   p_kst 1.000000e-05   p_cons 2.153500e-02   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 4.128370e-02	ci left: 2.107268e-02	ci right 2.196337e-02	k: 8821	n:410000
KS ci ratio: 1.753064e+00	ci left: 2.658214e-06	ci right 2.497929e-05	k: 4	n:410000
ACOT4   410000 perm   123 sec   (3339 perm/sec)   p_kst 9.756098e-06   p_cons 2.151463e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 4.083124e-02	ci left: 2.103517e-02	ci right 2.191430e-02	k: 9018	n:420000
KS ci ratio: 1.753065e+00	ci left: 2.594923e-06	ci right 2.438455e-05	k: 4	n:420000
ACOT4   420000 perm   127 sec   (3300 perm/sec)   p_kst 9.523810e-06   p_cons 2.147143e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 4.034192e-02	ci left: 2.105242e-02	ci right 2.192149e-02	k: 9238	n:430000
KS ci ratio: 1.753065e+00	ci left: 2.534576e-06	ci right 2.381748e-05	k: 4	n:430000
ACOT4   430000 perm   132 sec   (3263 perm/sec)   p_kst 9.302326e-06   p_cons 2.148372e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 3.984181e-02	ci left: 2.109820e-02	ci right 2.195811e-02	k: 9471	n:440000
KS ci ratio: 1.753065e+00	ci left: 2.476972e-06	ci right 2.327617e-05	k: 4	n:440000
ACOT4   440000 perm   136 sec   (3226 perm/sec)   p_kst 9.090909e-06   p_cons 2.152500e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 3.938267e-02	ci left: 2.111781e-02	ci right 2.196837e-02	k: 9693	n:450000
KS ci ratio: 1.600321e+00	ci left: 3.607757e-06	ci right 2.592943e-05	k: 5	n:450000
ACOT4   450000 perm   141 sec   (3191 perm/sec)   p_kst 1.111111e-05   p_cons 2.154000e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 3.892700e-02	ci left: 2.114953e-02	ci right 2.199130e-02	k: 9921	n:460000
KS ci ratio: 1.600321e+00	ci left: 3.529327e-06	ci right 2.536576e-05	k: 5	n:460000
ACOT4   460000 perm   146 sec   (3155 perm/sec)   p_kst 1.086957e-05   p_cons 2.156739e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 3.848292e-02	ci left: 2.118417e-02	ci right 2.201749e-02	k: 10151	n:470000
KS ci ratio: 1.600321e+00	ci left: 3.454235e-06	ci right 2.482606e-05	k: 5	n:470000
ACOT4   470000 perm   151 sec   (3121 perm/sec)   p_kst 1.063830e-05   p_cons 2.159787e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 3.811378e-02	ci left: 2.115138e-02	ci right 2.197525e-02	k: 10349	n:480000
KS ci ratio: 1.600322e+00	ci left: 3.382272e-06	ci right 2.430886e-05	k: 5	n:480000
ACOT4   480000 perm   155 sec   (3088 perm/sec)   p_kst 1.041667e-05   p_cons 2.156042e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 3.769848e-02	ci left: 2.118264e-02	ci right 2.199854e-02	k: 10578	n:490000
KS ci ratio: 1.600322e+00	ci left: 3.313246e-06	ci right 2.381276e-05	k: 5	n:490000
ACOT4   490000 perm   160 sec   (3057 perm/sec)   p_kst 1.020408e-05   p_cons 2.158776e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 3.728236e-02	ci left: 2.122855e-02	ci right 2.203700e-02	k: 10815	n:500000
KS ci ratio: 1.600322e+00	ci left: 3.246980e-06	ci right 2.333651e-05	k: 5	n:500000
ACOT4   500000 perm   166 sec   (3020 perm/sec)   p_kst 1.000000e-05   p_cons 2.163000e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 3.690191e-02	ci left: 2.124745e-02	ci right 2.204819e-02	k: 11039	n:510000
KS ci ratio: 1.481609e+00	ci left: 4.317452e-06	ci right 2.560663e-05	k: 6	n:510000
ACOT4   510000 perm   171 sec   (2989 perm/sec)   p_kst 1.176471e-05   p_cons 2.164510e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 3.653951e-02	ci left: 2.125804e-02	ci right 2.205115e-02	k: 11259	n:520000
KS ci ratio: 1.481609e+00	ci left: 4.234423e-06	ci right 2.511420e-05	k: 6	n:520000
ACOT4   520000 perm   176 sec   (2954 perm/sec)   p_kst 1.153846e-05   p_cons 2.165192e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 3.620854e-02	ci left: 2.124396e-02	ci right 2.202921e-02	k: 11466	n:530000
KS ci ratio: 1.481610e+00	ci left: 4.154528e-06	ci right 2.464035e-05	k: 6	n:530000
ACOT4   530000 perm   181 sec   (2926 perm/sec)   p_kst 1.132075e-05   p_cons 2.163396e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 3.584093e-02	ci left: 2.128366e-02	ci right 2.206223e-02	k: 11702	n:540000
KS ci ratio: 1.481610e+00	ci left: 4.077593e-06	ci right 2.418405e-05	k: 6	n:540000
ACOT4   540000 perm   186 sec   (2898 perm/sec)   p_kst 1.111111e-05   p_cons 2.167037e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 3.555895e-02	ci left: 2.123364e-02	ci right 2.200414e-02	k: 11889	n:550000
KS ci ratio: 1.481610e+00	ci left: 4.003454e-06	ci right 2.374435e-05	k: 6	n:550000
ACOT4   550000 perm   192 sec   (2869 perm/sec)   p_kst 1.090909e-05   p_cons 2.161636e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 3.521059e-02	ci left: 2.127217e-02	ci right 2.203636e-02	k: 12125	n:560000
KS ci ratio: 1.481610e+00	ci left: 3.931964e-06	ci right 2.332034e-05	k: 6	n:560000
ACOT4   560000 perm   197 sec   (2840 perm/sec)   p_kst 1.071429e-05   p_cons 2.165179e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 3.490547e-02	ci left: 2.126939e-02	ci right 2.202672e-02	k: 12338	n:570000
KS ci ratio: 1.481610e+00	ci left: 3.862982e-06	ci right 2.291122e-05	k: 6	n:570000
ACOT4   570000 perm   203 sec   (2814 perm/sec)   p_kst 1.052632e-05   p_cons 2.164561e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 3.456314e-02	ci left: 2.132143e-02	ci right 2.207302e-02	k: 12583	n:580000
KS ci ratio: 1.481611e+00	ci left: 3.796379e-06	ci right 2.251620e-05	k: 6	n:580000
ACOT4   580000 perm   208 sec   (2787 perm/sec)   p_kst 1.034483e-05   p_cons 2.169483e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 3.427304e-02	ci left: 2.131964e-02	ci right 2.206473e-02	k: 12797	n:590000
KS ci ratio: 1.481611e+00	ci left: 3.732033e-06	ci right 2.213457e-05	k: 6	n:590000
ACOT4   590000 perm   214 sec   (2759 perm/sec)   p_kst 1.016949e-05   p_cons 2.168983e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 3.399412e-02	ci left: 2.131297e-02	ci right 2.205166e-02	k: 13008	n:600000
KS ci ratio: 1.481611e+00	ci left: 3.669832e-06	ci right 2.176566e-05	k: 6	n:600000
ACOT4   600000 perm   219 sec   (2734 perm/sec)   p_kst 1.000000e-05   p_cons 2.168000e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 3.368287e-02	ci left: 2.135533e-02	ci right 2.208857e-02	k: 13249	n:610000
KS ci ratio: 1.481611e+00	ci left: 3.609671e-06	ci right 2.140885e-05	k: 6	n:610000
ACOT4   610000 perm   225 sec   (2708 perm/sec)   p_kst 9.836066e-06   p_cons 2.171967e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 3.342563e-02	ci left: 2.133875e-02	ci right 2.206572e-02	k: 13454	n:620000
KS ci ratio: 1.481611e+00	ci left: 3.551450e-06	ci right 2.106355e-05	k: 6	n:620000
ACOT4   620000 perm   231 sec   (2683 perm/sec)   p_kst 9.677419e-06   p_cons 2.170000e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 3.318661e-02	ci left: 2.130698e-02	ci right 2.202758e-02	k: 13649	n:630000
KS ci ratio: 1.481611e+00	ci left: 3.495078e-06	ci right 2.072921e-05	k: 6	n:630000
ACOT4   630000 perm   237 sec   (2653 perm/sec)   p_kst 9.523810e-06   p_cons 2.166508e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 3.293805e-02	ci left: 2.129482e-02	ci right 2.200952e-02	k: 13856	n:640000
KS ci ratio: 1.481611e+00	ci left: 3.440467e-06	ci right 2.040532e-05	k: 6	n:640000
ACOT4   640000 perm   243 sec   (2630 perm/sec)   p_kst 9.375000e-06   p_cons 2.165000e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 3.269144e-02	ci left: 2.128764e-02	ci right 2.199664e-02	k: 14066	n:650000
KS ci ratio: 1.481612e+00	ci left: 3.387537e-06	ci right 2.009139e-05	k: 6	n:650000
ACOT4   650000 perm   249 sec   (2606 perm/sec)   p_kst 9.230769e-06   p_cons 2.164000e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 3.242012e-02	ci left: 2.131977e-02	ci right 2.202383e-02	k: 14302	n:660000
KS ci ratio: 1.481612e+00	ci left: 3.336210e-06	ci right 1.978698e-05	k: 6	n:660000
ACOT4   660000 perm   256 sec   (2582 perm/sec)   p_kst 9.090909e-06   p_cons 2.166970e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 3.214415e-02	ci left: 2.136577e-02	ci right 2.206524e-02	k: 14548	n:670000
KS ci ratio: 1.481612e+00	ci left: 3.286416e-06	ci right 1.949165e-05	k: 6	n:670000
ACOT4   670000 perm   262 sec   (2557 perm/sec)   p_kst 8.955224e-06   p_cons 2.171343e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 3.192919e-02	ci left: 2.133895e-02	ci right 2.203278e-02	k: 14745	n:680000
KS ci ratio: 1.481612e+00	ci left: 3.238086e-06	ci right 1.920501e-05	k: 6	n:680000
ACOT4   680000 perm   268 sec   (2535 perm/sec)   p_kst 8.823529e-06   p_cons 2.168382e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 3.170548e-02	ci left: 2.133017e-02	ci right 2.201878e-02	k: 14954	n:690000
KS ci ratio: 1.481612e+00	ci left: 3.191158e-06	ci right 1.892668e-05	k: 6	n:690000
ACOT4   690000 perm   275 sec   (2513 perm/sec)   p_kst 8.695652e-06   p_cons 2.167246e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 3.149384e-02	ci left: 2.131175e-02	ci right 2.199508e-02	k: 15156	n:700000
KS ci ratio: 1.481612e+00	ci left: 3.145570e-06	ci right 1.865630e-05	k: 6	n:700000
ACOT4   700000 perm   281 sec   (2491 perm/sec)   p_kst 8.571429e-06   p_cons 2.165143e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 3.129680e-02	ci left: 2.127987e-02	ci right 2.195784e-02	k: 15348	n:710000
KS ci ratio: 1.481612e+00	ci left: 3.101266e-06	ci right 1.839353e-05	k: 6	n:710000
ACOT4   710000 perm   287 sec   (2471 perm/sec)   p_kst 8.450704e-06   p_cons 2.161690e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 3.107174e-02	ci left: 2.129163e-02	ci right 2.196500e-02	k: 15571	n:720000
KS ci ratio: 1.481613e+00	ci left: 3.058192e-06	ci right 1.813807e-05	k: 6	n:720000
ACOT4   720000 perm   294 sec   (2448 perm/sec)   p_kst 8.333333e-06   p_cons 2.162639e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 3.088447e-02	ci left: 2.125822e-02	ci right 2.192641e-02	k: 15761	n:730000
KS ci ratio: 1.481613e+00	ci left: 3.016299e-06	ci right 1.788960e-05	k: 6	n:730000
ACOT4   730000 perm   301 sec   (2427 perm/sec)   p_kst 8.219178e-06   p_cons 2.159041e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 3.069169e-02	ci left: 2.123779e-02	ci right 2.190110e-02	k: 15960	n:740000
KS ci ratio: 1.481613e+00	ci left: 2.975538e-06	ci right 1.764785e-05	k: 6	n:740000
ACOT4   740000 perm   308 sec   (2406 perm/sec)   p_kst 8.108108e-06   p_cons 2.156757e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 3.047551e-02	ci left: 2.125497e-02	ci right 2.191406e-02	k: 16187	n:750000
KS ci ratio: 1.481613e+00	ci left: 2.935864e-06	ci right 1.741255e-05	k: 6	n:750000
ACOT4   750000 perm   315 sec   (2385 perm/sec)   p_kst 8.000000e-06   p_cons 2.158267e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 3.027514e-02	ci left: 2.125605e-02	ci right 2.191076e-02	k: 16402	n:760000
KS ci ratio: 1.481613e+00	ci left: 2.897235e-06	ci right 1.718344e-05	k: 6	n:760000
ACOT4   760000 perm   321 sec   (2365 perm/sec)   p_kst 7.894737e-06   p_cons 2.158158e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 3.009812e-02	ci left: 2.123004e-02	ci right 2.188006e-02	k: 16596	n:770000
KS ci ratio: 1.481613e+00	ci left: 2.859608e-06	ci right 1.696028e-05	k: 6	n:770000
ACOT4   770000 perm   328 sec   (2344 perm/sec)   p_kst 7.792208e-06   p_cons 2.155325e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 2.991233e-02	ci left: 2.122125e-02	ci right 2.186693e-02	k: 16803	n:780000
KS ci ratio: 1.481613e+00	ci left: 2.822946e-06	ci right 1.674284e-05	k: 6	n:780000
ACOT4   780000 perm   336 sec   (2322 perm/sec)   p_kst 7.692308e-06   p_cons 2.154231e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 2.970229e-02	ci left: 2.125165e-02	ci right 2.189364e-02	k: 17041	n:790000
KS ci ratio: 1.481613e+00	ci left: 2.787213e-06	ci right 1.653091e-05	k: 6	n:790000
ACOT4   790000 perm   343 sec   (2305 perm/sec)   p_kst 7.594937e-06   p_cons 2.157089e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 2.952982e-02	ci left: 2.123415e-02	ci right 2.187182e-02	k: 17241	n:800000
KS ci ratio: 1.481613e+00	ci left: 2.752373e-06	ci right 1.632427e-05	k: 6	n:800000
ACOT4   800000 perm   350 sec   (2285 perm/sec)   p_kst 7.500000e-06   p_cons 2.155125e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 2.936031e-02	ci left: 2.121710e-02	ci right 2.185053e-02	k: 17441	n:810000
KS ci ratio: 1.481613e+00	ci left: 2.718393e-06	ci right 1.612274e-05	k: 6	n:810000
ACOT4   810000 perm   358 sec   (2265 perm/sec)   p_kst 7.407407e-06   p_cons 2.153210e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 2.918440e-02	ci left: 2.121378e-02	ci right 2.184326e-02	k: 17652	n:820000
KS ci ratio: 1.481614e+00	ci left: 2.685241e-06	ci right 1.592612e-05	k: 6	n:820000
ACOT4   820000 perm   365 sec   (2248 perm/sec)   p_kst 7.317073e-06   p_cons 2.152683e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 2.899751e-02	ci left: 2.123090e-02	ci right 2.185678e-02	k: 17880	n:830000
KS ci ratio: 1.481614e+00	ci left: 2.652889e-06	ci right 1.573424e-05	k: 6	n:830000
ACOT4   830000 perm   372 sec   (2230 perm/sec)   p_kst 7.228916e-06   p_cons 2.154217e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 2.883370e-02	ci left: 2.121925e-02	ci right 2.184120e-02	k: 18084	n:840000
KS ci ratio: 1.481614e+00	ci left: 2.621307e-06	ci right 1.554693e-05	k: 6	n:840000
ACOT4   840000 perm   380 sec   (2213 perm/sec)   p_kst 7.142857e-06   p_cons 2.152857e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 2.866623e-02	ci left: 2.121723e-02	ci right 2.183545e-02	k: 18296	n:850000
KS ci ratio: 1.481614e+00	ci left: 2.590468e-06	ci right 1.536402e-05	k: 6	n:850000
ACOT4   850000 perm   387 sec   (2196 perm/sec)   p_kst 7.058824e-06   p_cons 2.152471e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 2.849849e-02	ci left: 2.121989e-02	ci right 2.183451e-02	k: 18512	n:860000
KS ci ratio: 1.481614e+00	ci left: 2.560346e-06	ci right 1.518537e-05	k: 6	n:860000
ACOT4   860000 perm   395 sec   (2179 perm/sec)   p_kst 6.976744e-06   p_cons 2.152558e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 2.835456e-02	ci left: 2.119167e-02	ci right 2.180232e-02	k: 18701	n:870000
KS ci ratio: 1.481614e+00	ci left: 2.530917e-06	ci right 1.501083e-05	k: 6	n:870000
ACOT4   870000 perm   402 sec   (2163 perm/sec)   p_kst 6.896552e-06   p_cons 2.149540e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 2.819221e-02	ci left: 2.119458e-02	ci right 2.180176e-02	k: 18917	n:880000
KS ci ratio: 1.481614e+00	ci left: 2.502157e-06	ci right 1.484025e-05	k: 6	n:880000
ACOT4   880000 perm   410 sec   (2146 perm/sec)   p_kst 6.818182e-06   p_cons 2.149659e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 2.802738e-02	ci left: 2.120524e-02	ci right 2.180912e-02	k: 19140	n:890000
KS ci ratio: 1.481614e+00	ci left: 2.474042e-06	ci right 1.467351e-05	k: 6	n:890000
ACOT4   890000 perm   418 sec   (2129 perm/sec)   p_kst 6.741573e-06   p_cons 2.150562e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 2.787496e-02	ci left: 2.120133e-02	ci right 2.180176e-02	k: 19350	n:900000
KS ci ratio: 1.481614e+00	ci left: 2.446553e-06	ci right 1.451047e-05	k: 6	n:900000
ACOT4   900000 perm   426 sec   (2114 perm/sec)   p_kst 6.666667e-06   p_cons 2.150000e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 2.773081e-02	ci left: 2.118878e-02	ci right 2.178570e-02	k: 19552	n:910000
KS ci ratio: 1.481614e+00	ci left: 2.419668e-06	ci right 1.435101e-05	k: 6	n:910000
ACOT4   910000 perm   434 sec   (2097 perm/sec)   p_kst 6.593407e-06   p_cons 2.148571e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 2.758815e-02	ci left: 2.117759e-02	ci right 2.177108e-02	k: 19755	n:920000
KS ci ratio: 1.385923e+00	ci left: 3.059096e-06	ci right 1.567676e-05	k: 7	n:920000
ACOT4   920000 perm   442 sec   (2082 perm/sec)   p_kst 7.608696e-06   p_cons 2.147283e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 2.742591e-02	ci left: 2.119976e-02	ci right 2.179032e-02	k: 19989	n:930000
KS ci ratio: 1.385923e+00	ci left: 3.026202e-06	ci right 1.550819e-05	k: 7	n:930000
ACOT4   930000 perm   450 sec   (2066 perm/sec)   p_kst 7.526882e-06   p_cons 2.149355e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 2.728236e-02	ci left: 2.119716e-02	ci right 2.178451e-02	k: 20200	n:940000
KS ci ratio: 1.385923e+00	ci left: 2.994008e-06	ci right 1.534321e-05	k: 7	n:940000
ACOT4   940000 perm   458 sec   (2051 perm/sec)   p_kst 7.446809e-06   p_cons 2.148936e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 2.714376e-02	ci left: 2.119045e-02	ci right 2.177458e-02	k: 20407	n:950000
KS ci ratio: 1.385923e+00	ci left: 2.962492e-06	ci right 1.518170e-05	k: 7	n:950000
ACOT4   950000 perm   466 sec   (2037 perm/sec)   p_kst 7.368421e-06   p_cons 2.148105e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 2.701864e-02	ci left: 2.116628e-02	ci right 2.174702e-02	k: 20597	n:960000
KS ci ratio: 1.385923e+00	ci left: 2.931633e-06	ci right 1.502356e-05	k: 7	n:960000
ACOT4   960000 perm   475 sec   (2023 perm/sec)   p_kst 7.291667e-06   p_cons 2.145521e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 2.687476e-02	ci left: 2.117438e-02	ci right 2.175220e-02	k: 20818	n:970000
KS ci ratio: 1.385923e+00	ci left: 2.901410e-06	ci right 1.486868e-05	k: 7	n:970000
ACOT4   970000 perm   483 sec   (2009 perm/sec)   p_kst 7.216495e-06   p_cons 2.146186e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 2.673315e-02	ci left: 2.118231e-02	ci right 2.175726e-02	k: 21039	n:980000
KS ci ratio: 1.385923e+00	ci left: 2.871804e-06	ci right 1.471696e-05	k: 7	n:980000
ACOT4   980000 perm   491 sec   (1995 perm/sec)   p_kst 7.142857e-06   p_cons 2.146837e-02   p_joint 0

Joint ci ratio: 5.717769e-01	ci left: 3.401816e-05	ci right 6.197685e-05	k: 46	n:990000
Cons ci ratio: 2.788883e-02	ci left: 1.929273e-02	ci right 1.983938e-02	k: 19369	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
ACOT4   990000 perm   500 sec   (1981 perm/sec)   p_kst 1.010101e-06   p_cons 1.956465e-02   p_joint 4.646465e-05

Joint ci ratio: 6.048561e-01	ci left: 2.942246e-05	ci right 5.562072e-05	k: 41	n:1000000
Cons ci ratio: 2.775313e-02	ci left: 1.928848e-02	ci right 1.983231e-02	k: 19559	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
ACOT4   1000000 perm   508 sec   (1967 perm/sec)   p_kst 1.000000e-06   p_cons 1.955900e-02   p_joint 4.100000e-05

Joint ci ratio: 5.977814e-01	ci left: 2.997036e-05	ci right 5.620929e-05	k: 42	n:1010000
Cons ci ratio: 2.761939e-02	ci left: 1.928432e-02	ci right 1.982537e-02	k: 19749	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
ACOT4   1010000 perm   517 sec   (1952 perm/sec)   p_kst 9.900990e-07   p_cons 1.955347e-02   p_joint 4.158416e-05

Joint ci ratio: 5.909492e-01	ci left: 3.050929e-05	ci right 5.678460e-05	k: 43	n:1020000
Cons ci ratio: 2.749248e-02	ci left: 1.927343e-02	ci right 1.981165e-02	k: 19932	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
ACOT4   1020000 perm   526 sec   (1939 perm/sec)   p_kst 9.803922e-07   p_cons 1.954118e-02   p_joint 4.215686e-05

Joint ci ratio: 5.843460e-01	ci left: 3.103945e-05	ci right 5.734710e-05	k: 44	n:1030000
Cons ci ratio: 2.735691e-02	ci left: 1.927723e-02	ci right 1.981286e-02	k: 20130	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
ACOT4   1030000 perm   535 sec   (1926 perm/sec)   p_kst 9.708738e-07   p_cons 1.954369e-02   p_joint 4.271845e-05

Joint ci ratio: 5.843462e-01	ci left: 3.074100e-05	ci right 5.679569e-05	k: 44	n:1040000
Cons ci ratio: 2.725137e-02	ci left: 1.924179e-02	ci right 1.977435e-02	k: 20287	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
ACOT4   1040000 perm   544 sec   (1913 perm/sec)   p_kst 9.615385e-07   p_cons 1.950673e-02   p_joint 4.230769e-05

Joint ci ratio: 5.843463e-01	ci left: 3.044822e-05	ci right 5.625478e-05	k: 44	n:1050000
Cons ci ratio: 2.711055e-02	ci left: 1.925813e-02	ci right 1.978834e-02	k: 20498	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
ACOT4   1050000 perm   552 sec   (1901 perm/sec)   p_kst 9.523810e-07   p_cons 1.952190e-02   p_joint 4.190476e-05

Joint ci ratio: 5.843464e-01	ci left: 3.016098e-05	ci right 5.572408e-05	k: 44	n:1060000
Cons ci ratio: 2.698518e-02	ci left: 1.925542e-02	ci right 1.978306e-02	k: 20689	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
ACOT4   1060000 perm   561 sec   (1888 perm/sec)   p_kst 9.433962e-07   p_cons 1.951792e-02   p_joint 4.150943e-05

Joint ci ratio: 5.843465e-01	ci left: 2.987910e-05	ci right 5.520330e-05	k: 44	n:1070000
Cons ci ratio: 2.687466e-02	ci left: 1.923419e-02	ci right 1.975907e-02	k: 20860	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
ACOT4   1070000 perm   570 sec   (1876 perm/sec)   p_kst 9.345794e-07   p_cons 1.949533e-02   p_joint 4.112150e-05

Joint ci ratio: 6.048571e-01	ci left: 2.724301e-05	ci right 5.150070e-05	k: 41	n:1080000
Cons ci ratio: 2.673698e-02	ci left: 1.925384e-02	ci right 1.977652e-02	k: 21075	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
ACOT4   1080000 perm   579 sec   (1864 perm/sec)   p_kst 9.259259e-07   p_cons 1.951389e-02   p_joint 3.796296e-05

Joint ci ratio: 6.048572e-01	ci left: 2.699307e-05	ci right 5.102822e-05	k: 41	n:1090000
Cons ci ratio: 2.662819e-02	ci left: 1.923486e-02	ci right 1.975486e-02	k: 21248	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
ACOT4   1090000 perm   588 sec   (1852 perm/sec)   p_kst 9.174312e-07   p_cons 1.949358e-02   p_joint 3.761468e-05

Joint ci ratio: 6.048573e-01	ci left: 2.674768e-05	ci right 5.056433e-05	k: 41	n:1100000
Cons ci ratio: 2.651756e-02	ci left: 1.922073e-02	ci right 1.973816e-02	k: 21426	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
ACOT4   1100000 perm   598 sec   (1841 perm/sec)   p_kst 9.090909e-07   p_cons 1.947818e-02   p_joint 3.727273e-05

Joint ci ratio: 6.048574e-01	ci left: 2.650671e-05	ci right 5.010880e-05	k: 41	n:1110000
Cons ci ratio: 2.641579e-02	ci left: 1.919613e-02	ci right 1.971088e-02	k: 21592	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
ACOT4   1110000 perm   607 sec   (1828 perm/sec)   p_kst 9.009009e-07   p_cons 1.945225e-02   p_joint 3.693694e-05

Joint ci ratio: 5.977827e-01	ci left: 2.702683e-05	ci right 5.068877e-05	k: 42	n:1120000
Cons ci ratio: 2.629238e-02	ci left: 1.920479e-02	ci right 1.971734e-02	k: 21795	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
ACOT4   1120000 perm   616 sec   (1817 perm/sec)   p_kst 8.928571e-07   p_cons 1.945982e-02   p_joint 3.750000e-05

Joint ci ratio: 5.977828e-01	ci left: 2.678765e-05	ci right 5.024020e-05	k: 42	n:1130000
Cons ci ratio: 2.617434e-02	ci left: 1.920803e-02	ci right 1.971833e-02	k: 21992	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
ACOT4   1130000 perm   626 sec   (1806 perm/sec)   p_kst 8.849558e-07   p_cons 1.946195e-02   p_joint 3.716814e-05

Joint ci ratio: 5.909506e-01	ci left: 2.729777e-05	ci right 5.080731e-05	k: 43	n:1140000
Cons ci ratio: 2.606625e-02	ci left: 1.919902e-02	ci right 1.970694e-02	k: 22175	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
ACOT4   1140000 perm   635 sec   (1795 perm/sec)   p_kst 8.771930e-07   p_cons 1.945175e-02   p_joint 3.771930e-05

Joint ci ratio: 5.909507e-01	ci left: 2.706040e-05	ci right 5.036551e-05	k: 43	n:1150000
Cons ci ratio: 2.594766e-02	ci left: 1.920745e-02	ci right 1.971324e-02	k: 22378	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
ACOT4   1150000 perm   645 sec   (1784 perm/sec)   p_kst 8.695652e-07   p_cons 1.945913e-02   p_joint 3.739130e-05

Joint ci ratio: 5.909508e-01	ci left: 2.682712e-05	ci right 4.993133e-05	k: 43	n:1160000
Cons ci ratio: 2.582776e-02	ci left: 1.922002e-02	ci right 1.972377e-02	k: 22586	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
ACOT4   1160000 perm   654 sec   (1774 perm/sec)   p_kst 8.620690e-07   p_cons 1.947069e-02   p_joint 3.706897e-05

Joint ci ratio: 5.909509e-01	ci left: 2.659783e-05	ci right 4.950457e-05	k: 43	n:1170000
Cons ci ratio: 2.571008e-02	ci left: 1.923153e-02	ci right 1.973325e-02	k: 22793	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
ACOT4   1170000 perm   664 sec   (1763 perm/sec)   p_kst 8.547009e-07   p_cons 1.948120e-02   p_joint 3.675214e-05

Joint ci ratio: 5.843477e-01	ci left: 2.709374e-05	ci right 5.005726e-05	k: 44	n:1180000
Cons ci ratio: 2.558662e-02	ci left: 1.925380e-02	ci right 1.975365e-02	k: 23013	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
ACOT4   1180000 perm   673 sec   (1753 perm/sec)   p_kst 8.474576e-07   p_cons 1.950254e-02   p_joint 3.728814e-05

Joint ci ratio: 5.843478e-01	ci left: 2.686606e-05	ci right 4.963662e-05	k: 44	n:1190000
Cons ci ratio: 2.549796e-02	ci left: 1.922643e-02	ci right 1.972382e-02	k: 23174	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
ACOT4   1190000 perm   683 sec   (1743 perm/sec)   p_kst 8.403361e-07   p_cons 1.947395e-02   p_joint 3.697479e-05

Joint ci ratio: 5.779611e-01	ci left: 2.735288e-05	ci right 5.017763e-05	k: 45	n:1200000
Cons ci ratio: 2.538194e-02	ci left: 1.924175e-02	ci right 1.973724e-02	k: 23386	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
ACOT4   1200000 perm   693 sec   (1732 perm/sec)   p_kst 8.333333e-07   p_cons 1.948833e-02   p_joint 3.750000e-05

Joint ci ratio: 5.779612e-01	ci left: 2.712683e-05	ci right 4.976294e-05	k: 45	n:1210000
Cons ci ratio: 2.527077e-02	ci left: 1.925190e-02	ci right 1.974545e-02	k: 23592	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
ACOT4   1210000 perm   703 sec   (1721 perm/sec)   p_kst 8.264463e-07   p_cons 1.949752e-02   p_joint 3.719008e-05

Joint ci ratio: 5.779613e-01	ci left: 2.690447e-05	ci right 4.935505e-05	k: 45	n:1220000
Cons ci ratio: 2.517130e-02	ci left: 1.924641e-02	ci right 1.973784e-02	k: 23779	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
ACOT4   1220000 perm   713 sec   (1711 perm/sec)   p_kst 8.196721e-07   p_cons 1.949098e-02   p_joint 3.688525e-05

Joint ci ratio: 5.977837e-01	ci left: 2.460979e-05	ci right 4.615566e-05	k: 42	n:1230000
Cons ci ratio: 2.506819e-02	ci left: 1.924828e-02	ci right 1.973772e-02	k: 23975	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
ACOT4   1230000 perm   723 sec   (1701 perm/sec)   p_kst 8.130081e-07   p_cons 1.949187e-02   p_joint 3.414634e-05

Joint ci ratio: 5.977838e-01	ci left: 2.441132e-05	ci right 4.578344e-05	k: 42	n:1240000
Cons ci ratio: 2.497371e-02	ci left: 1.923891e-02	ci right 1.972624e-02	k: 24157	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
ACOT4   1240000 perm   733 sec   (1691 perm/sec)   p_kst 8.064516e-07   p_cons 1.948145e-02   p_joint 3.387097e-05

Joint ci ratio: 5.977839e-01	ci left: 2.421603e-05	ci right 4.541717e-05	k: 42	n:1250000
Cons ci ratio: 2.487717e-02	ci left: 1.923446e-02	ci right 1.971977e-02	k: 24345	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
ACOT4   1250000 perm   744 sec   (1681 perm/sec)   p_kst 8.000000e-07   p_cons 1.947600e-02   p_joint 3.360000e-05

Joint ci ratio: 5.977840e-01	ci left: 2.402384e-05	ci right 4.505672e-05	k: 42	n:1260000
Cons ci ratio: 2.477814e-02	ci left: 1.923561e-02	ci right 1.971899e-02	k: 24540	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
ACOT4   1260000 perm   754 sec   (1671 perm/sec)   p_kst 7.936508e-07   p_cons 1.947619e-02   p_joint 3.333333e-05

Joint ci ratio: 5.977840e-01	ci left: 2.383467e-05	ci right 4.470194e-05	k: 42	n:1270000
Cons ci ratio: 2.467265e-02	ci left: 1.924848e-02	ci right 1.973009e-02	k: 24750	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
ACOT4   1270000 perm   765 sec   (1661 perm/sec)   p_kst 7.874016e-07   p_cons 1.948819e-02   p_joint 3.307087e-05

Joint ci ratio: 5.977841e-01	ci left: 2.364846e-05	ci right 4.435271e-05	k: 42	n:1280000
Cons ci ratio: 2.458306e-02	ci left: 1.923863e-02	ci right 1.971823e-02	k: 24931	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
ACOT4   1280000 perm   775 sec   (1652 perm/sec)   p_kst 7.812500e-07   p_cons 1.947734e-02   p_joint 3.281250e-05

Joint ci ratio: 5.909519e-01	ci left: 2.412360e-05	ci right 4.489952e-05	k: 43	n:1290000
Cons ci ratio: 2.448599e-02	ci left: 1.924204e-02	ci right 1.971981e-02	k: 25129	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
ACOT4   1290000 perm   785 sec   (1642 perm/sec)   p_kst 7.751938e-07   p_cons 1.947984e-02   p_joint 3.333333e-05

Joint ci ratio: 5.909520e-01	ci left: 2.393803e-05	ci right 4.455414e-05	k: 43	n:1300000
Cons ci ratio: 2.438614e-02	ci left: 1.925152e-02	ci right 1.972754e-02	k: 25335	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
ACOT4   1300000 perm   796 sec   (1633 perm/sec)   p_kst 7.692308e-07   p_cons 1.948846e-02   p_joint 3.307692e-05

Joint ci ratio: 5.843488e-01	ci left: 2.440504e-05	ci right 4.508978e-05	k: 44	n:1310000
Cons ci ratio: 2.429380e-02	ci left: 1.925100e-02	ci right 1.972518e-02	k: 25528	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
ACOT4   1310000 perm   807 sec   (1623 perm/sec)   p_kst 7.633588e-07   p_cons 1.948702e-02   p_joint 3.358779e-05

Joint ci ratio: 5.779622e-01	ci left: 2.486625e-05	ci right 4.561606e-05	k: 45	n:1320000
Cons ci ratio: 2.421211e-02	ci left: 1.923542e-02	ci right 1.970760e-02	k: 25701	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
ACOT4   1320000 perm   818 sec   (1613 perm/sec)   p_kst 7.575758e-07   p_cons 1.947045e-02   p_joint 3.409091e-05

Joint ci ratio: 6.197969e-01	ci left: 2.085182e-05	ci right 4.008571e-05	k: 39	n:1330000
Cons ci ratio: 2.411840e-02	ci left: 1.924026e-02	ci right 1.971071e-02	k: 25901	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
ACOT4   1330000 perm   829 sec   (1605 perm/sec)   p_kst 7.518797e-07   p_cons 1.947444e-02   p_joint 2.932331e-05

Joint ci ratio: 6.197969e-01	ci left: 2.069621e-05	ci right 3.978657e-05	k: 39	n:1340000
Cons ci ratio: 2.402625e-02	ci left: 1.924429e-02	ci right 1.971301e-02	k: 26100	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
ACOT4   1340000 perm   840 sec   (1596 perm/sec)   p_kst 7.462687e-07   p_cons 1.947761e-02   p_joint 2.910448e-05

Joint ci ratio: 6.197970e-01	ci left: 2.054290e-05	ci right 3.949185e-05	k: 39	n:1350000
Cons ci ratio: 2.395233e-02	ci left: 1.922102e-02	ci right 1.968771e-02	k: 26262	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
ACOT4   1350000 perm   850 sec   (1588 perm/sec)   p_kst 7.407407e-07   p_cons 1.945333e-02   p_joint 2.888889e-05

Joint ci ratio: 6.197971e-01	ci left: 2.039185e-05	ci right 3.920147e-05	k: 39	n:1360000
Cons ci ratio: 2.387909e-02	ci left: 1.919809e-02	ci right 1.966278e-02	k: 26424	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
ACOT4   1360000 perm   861 sec   (1579 perm/sec)   p_kst 7.352941e-07   p_cons 1.942941e-02   p_joint 2.867647e-05

Joint ci ratio: 6.197971e-01	ci left: 2.024300e-05	ci right 3.891533e-05	k: 39	n:1370000
Cons ci ratio: 2.379191e-02	ci left: 1.919872e-02	ci right 1.966171e-02	k: 26618	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
ACOT4   1370000 perm   872 sec   (1571 perm/sec)   p_kst 7.299270e-07   p_cons 1.942920e-02   p_joint 2.846715e-05

Joint ci ratio: 6.197972e-01	ci left: 2.009632e-05	ci right 3.863334e-05	k: 39	n:1380000
Cons ci ratio: 2.371697e-02	ci left: 1.918133e-02	ci right 1.964243e-02	k: 26787	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
ACOT4   1380000 perm   883 sec   (1562 perm/sec)   p_kst 7.246377e-07   p_cons 1.941087e-02   p_joint 2.826087e-05

Joint ci ratio: 6.197973e-01	ci left: 1.995174e-05	ci right 3.835540e-05	k: 39	n:1390000
Cons ci ratio: 2.363781e-02	ci left: 1.917207e-02	ci right 1.963138e-02	k: 26967	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
ACOT4   1390000 perm   894 sec   (1554 perm/sec)   p_kst 7.194245e-07   p_cons 1.940072e-02   p_joint 2.805755e-05

Joint ci ratio: 6.197973e-01	ci left: 1.980922e-05	ci right 3.808144e-05	k: 39	n:1400000
Cons ci ratio: 2.355678e-02	ci left: 1.916720e-02	ci right 1.962480e-02	k: 27153	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
ACOT4   1400000 perm   905 sec   (1546 perm/sec)   p_kst 7.142857e-07   p_cons 1.939500e-02   p_joint 2.785714e-05

Joint ci ratio: 6.197974e-01	ci left: 1.966873e-05	ci right 3.781136e-05	k: 39	n:1410000
Cons ci ratio: 2.346651e-02	ci left: 1.917861e-02	ci right 1.963471e-02	k: 27362	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
ACOT4   1410000 perm   917 sec   (1538 perm/sec)   p_kst 7.092199e-07   p_cons 1.940567e-02   p_joint 2.765957e-05

Joint ci ratio: 6.197975e-01	ci left: 1.953022e-05	ci right 3.754508e-05	k: 39	n:1420000
Cons ci ratio: 2.338074e-02	ci left: 1.918428e-02	ci right 1.963881e-02	k: 27563	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
ACOT4   1420000 perm   928 sec   (1529 perm/sec)   p_kst 7.042254e-07   p_cons 1.941056e-02   p_joint 2.746479e-05

Joint ci ratio: 6.197975e-01	ci left: 1.939364e-05	ci right 3.728253e-05	k: 39	n:1430000
Cons ci ratio: 2.329419e-02	ci left: 1.919264e-02	ci right 1.964567e-02	k: 27768	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
ACOT4   1430000 perm   940 sec   (1521 perm/sec)   p_kst 6.993007e-07   p_cons 1.941818e-02   p_joint 2.727273e-05

Joint ci ratio: 6.197976e-01	ci left: 1.925897e-05	ci right 3.702362e-05	k: 39	n:1440000
Cons ci ratio: 2.321240e-02	ci left: 1.919468e-02	ci right 1.964615e-02	k: 27964	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
ACOT4   1440000 perm   952 sec   (1513 perm/sec)   p_kst 6.944444e-07   p_cons 1.941944e-02   p_joint 2.708333e-05

Joint ci ratio: 6.197977e-01	ci left: 1.912615e-05	ci right 3.676829e-05	k: 39	n:1450000
Cons ci ratio: 2.313063e-02	ci left: 1.919806e-02	ci right 1.964800e-02	k: 28162	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
ACOT4   1450000 perm   963 sec   (1506 perm/sec)   p_kst 6.896552e-07   p_cons 1.942207e-02   p_joint 2.689655e-05

Joint ci ratio: 6.121923e-01	ci left: 1.957307e-05	ci right 3.730711e-05	k: 40	n:1460000
Cons ci ratio: 2.305220e-02	ci left: 1.919732e-02	ci right 1.964569e-02	k: 28354	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
ACOT4   1460000 perm   975 sec   (1497 perm/sec)   p_kst 6.849315e-07   p_cons 1.942055e-02   p_joint 2.739726e-05

Joint ci ratio: 6.444357e-01	ci left: 1.715241e-05	ci right 3.390404e-05	k: 36	n:1470000
Cons ci ratio: 2.297333e-02	ci left: 1.919861e-02	ci right 1.964546e-02	k: 28549	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
ACOT4   1470000 perm   987 sec   (1490 perm/sec)   p_kst 6.802721e-07   p_cons 1.942109e-02   p_joint 2.448980e-05

Joint ci ratio: 6.358996e-01	ci left: 1.760237e-05	ci right 3.445904e-05	k: 37	n:1480000
Cons ci ratio: 2.289121e-02	ci left: 1.920661e-02	ci right 1.965203e-02	k: 28754	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
ACOT4   1480000 perm   999 sec   (1482 perm/sec)   p_kst 6.756757e-07   p_cons 1.942838e-02   p_joint 2.500000e-05

Joint ci ratio: 6.358996e-01	ci left: 1.748423e-05	ci right 3.422778e-05	k: 37	n:1490000
Cons ci ratio: 2.281719e-02	ci left: 1.920249e-02	ci right 1.964636e-02	k: 28941	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
ACOT4   1490000 perm   1011 sec   (1474 perm/sec)   p_kst 6.711409e-07   p_cons 1.942349e-02   p_joint 2.483221e-05

Joint ci ratio: 6.358997e-01	ci left: 1.736767e-05	ci right 3.399959e-05	k: 37	n:1500000
Cons ci ratio: 2.274509e-02	ci left: 1.919644e-02	ci right 1.963875e-02	k: 29125	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
ACOT4   1500000 perm   1023 sec   (1467 perm/sec)   p_kst 6.666667e-07   p_cons 1.941667e-02   p_joint 2.466667e-05

Joint ci ratio: 6.276940e-01	ci left: 1.780871e-05	ci right 3.454154e-05	k: 38	n:1510000
Cons ci ratio: 2.266735e-02	ci left: 1.920101e-02	ci right 1.964189e-02	k: 29325	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
ACOT4   1510000 perm   1035 sec   (1459 perm/sec)   p_kst 6.622517e-07   p_cons 1.942053e-02   p_joint 2.516556e-05

Joint ci ratio: 6.276941e-01	ci left: 1.769155e-05	ci right 3.431429e-05	k: 38	n:1520000
Cons ci ratio: 2.260446e-02	ci left: 1.918197e-02	ci right 1.962118e-02	k: 29489	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
ACOT4   1520000 perm   1047 sec   (1452 perm/sec)   p_kst 6.578947e-07   p_cons 1.940066e-02   p_joint 2.500000e-05

Joint ci ratio: 6.276942e-01	ci left: 1.757592e-05	ci right 3.409002e-05	k: 38	n:1530000
Cons ci ratio: 2.252699e-02	ci left: 1.918853e-02	ci right 1.962636e-02	k: 29692	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
ACOT4   1530000 perm   1059 sec   (1445 perm/sec)   p_kst 6.535948e-07   p_cons 1.940654e-02   p_joint 2.483660e-05

Joint ci ratio: 6.121928e-01	ci left: 1.855629e-05	ci right 3.536909e-05	k: 40	n:1540000
Cons ci ratio: 2.245683e-02	ci left: 1.918403e-02	ci right 1.962037e-02	k: 29878	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
ACOT4   1540000 perm   1072 sec   (1437 perm/sec)   p_kst 6.493506e-07   p_cons 1.940130e-02   p_joint 2.597403e-05

Joint ci ratio: 6.121929e-01	ci left: 1.843657e-05	ci right 3.514090e-05	k: 40	n:1550000
Cons ci ratio: 2.238504e-02	ci left: 1.918344e-02	ci right 1.961836e-02	k: 30070	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
ACOT4   1550000 perm   1084 sec   (1430 perm/sec)   p_kst 6.451613e-07   p_cons 1.940000e-02   p_joint 2.580645e-05

Joint ci ratio: 6.121929e-01	ci left: 1.831839e-05	ci right 3.491564e-05	k: 40	n:1560000
Cons ci ratio: 2.231092e-02	ci left: 1.918796e-02	ci right 1.962152e-02	k: 30270	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
ACOT4   1560000 perm   1096 sec   (1424 perm/sec)   p_kst 6.410256e-07   p_cons 1.940385e-02   p_joint 2.564103e-05

Joint ci ratio: 6.359001e-01	ci left: 1.659331e-05	ci right 3.248369e-05	k: 37	n:1570000
Cons ci ratio: 2.224871e-02	ci left: 1.917342e-02	ci right 1.960543e-02	k: 30440	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
ACOT4   1570000 perm   1108 sec   (1417 perm/sec)   p_kst 6.369427e-07   p_cons 1.938854e-02   p_joint 2.356688e-05

Joint ci ratio: 6.359001e-01	ci left: 1.648829e-05	ci right 3.227810e-05	k: 37	n:1580000
Cons ci ratio: 2.218110e-02	ci left: 1.916914e-02	ci right 1.959972e-02	k: 30626	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
ACOT4   1580000 perm   1121 sec   (1409 perm/sec)   p_kst 6.329114e-07   p_cons 1.938354e-02   p_joint 2.341772e-05

Joint ci ratio: 6.359002e-01	ci left: 1.638459e-05	ci right 3.207510e-05	k: 37	n:1590000
Cons ci ratio: 2.211338e-02	ci left: 1.916616e-02	ci right 1.959534e-02	k: 30814	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
ACOT4   1590000 perm   1134 sec   (1402 perm/sec)   p_kst 6.289308e-07   p_cons 1.937987e-02   p_joint 2.327044e-05

Joint ci ratio: 6.359002e-01	ci left: 1.628218e-05	ci right 3.187463e-05	k: 37	n:1600000
Cons ci ratio: 2.204011e-02	ci left: 1.917379e-02	ci right 1.960170e-02	k: 31019	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
ACOT4   1600000 perm   1146 sec   (1396 perm/sec)   p_kst 6.250000e-07   p_cons 1.938688e-02   p_joint 2.312500e-05

Joint ci ratio: 6.359003e-01	ci left: 1.618105e-05	ci right 3.167665e-05	k: 37	n:1610000
Cons ci ratio: 2.197941e-02	ci left: 1.916094e-02	ci right 1.958738e-02	k: 31191	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
ACOT4   1610000 perm   1159 sec   (1389 perm/sec)   p_kst 6.211180e-07   p_cons 1.937329e-02   p_joint 2.298137e-05

Joint ci ratio: 6.359003e-01	ci left: 1.608117e-05	ci right 3.148111e-05	k: 37	n:1620000
Cons ci ratio: 2.191209e-02	ci left: 1.916053e-02	ci right 1.958563e-02	k: 31383	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
ACOT4   1620000 perm   1171 sec   (1383 perm/sec)   p_kst 6.172840e-07   p_cons 1.937222e-02   p_joint 2.283951e-05

Joint ci ratio: 6.625936e-01	ci left: 1.444543e-05	ci right 2.914810e-05	k: 34	n:1630000
Cons ci ratio: 2.184256e-02	ci left: 1.916501e-02	ci right 1.958885e-02	k: 31583	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
ACOT4   1630000 perm   1184 sec   (1376 perm/sec)   p_kst 6.134969e-07   p_cons 1.937607e-02   p_joint 2.085890e-05

Joint ci ratio: 6.625937e-01	ci left: 1.435735e-05	ci right 2.897036e-05	k: 34	n:1640000
Cons ci ratio: 2.178137e-02	ci left: 1.915609e-02	ci right 1.957853e-02	k: 31761	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
ACOT4   1640000 perm   1197 sec   (1370 perm/sec)   p_kst 6.097561e-07   p_cons 1.936646e-02   p_joint 2.073171e-05

Joint ci ratio: 6.533260e-01	ci left: 1.477506e-05	ci right 2.950080e-05	k: 35	n:1650000
Cons ci ratio: 2.171550e-02	ci left: 1.915633e-02	ci right 1.957748e-02	k: 31954	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
ACOT4   1650000 perm   1210 sec   (1363 perm/sec)   p_kst 6.060606e-07   p_cons 1.936606e-02   p_joint 2.121212e-05

Joint ci ratio: 6.533261e-01	ci left: 1.468606e-05	ci right 2.932309e-05	k: 35	n:1660000
Cons ci ratio: 2.164954e-02	ci left: 1.915776e-02	ci right 1.957765e-02	k: 32149	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
ACOT4   1660000 perm   1223 sec   (1357 perm/sec)   p_kst 6.024096e-07   p_cons 1.936687e-02   p_joint 2.108434e-05

Joint ci ratio: 6.533261e-01	ci left: 1.459812e-05	ci right 2.914750e-05	k: 35	n:1670000
Cons ci ratio: 2.158349e-02	ci left: 1.916037e-02	ci right 1.957902e-02	k: 32346	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
ACOT4   1670000 perm   1237 sec   (1350 perm/sec)   p_kst 5.988024e-07   p_cons 1.936886e-02   p_joint 2.095808e-05

Joint ci ratio: 6.533261e-01	ci left: 1.451122e-05	ci right 2.897401e-05	k: 35	n:1680000
Cons ci ratio: 2.152175e-02	ci left: 1.915644e-02	ci right 1.957379e-02	k: 32532	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
ACOT4   1680000 perm   1250 sec   (1344 perm/sec)   p_kst 5.952381e-07   p_cons 1.936429e-02   p_joint 2.083333e-05

Joint ci ratio: 6.444368e-01	ci left: 1.491954e-05	ci right 2.949052e-05	k: 36	n:1690000
Cons ci ratio: 2.145619e-02	ci left: 1.916021e-02	ci right 1.957635e-02	k: 32731	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
ACOT4   1690000 perm   1263 sec   (1338 perm/sec)   p_kst 5.917160e-07   p_cons 1.936746e-02   p_joint 2.130178e-05

Joint ci ratio: 6.444368e-01	ci left: 1.483178e-05	ci right 2.931704e-05	k: 36	n:1700000
Cons ci ratio: 2.139156e-02	ci left: 1.916335e-02	ci right 1.957829e-02	k: 32929	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
ACOT4   1700000 perm   1277 sec   (1331 perm/sec)   p_kst 5.882353e-07   p_cons 1.937000e-02   p_joint 2.117647e-05

Joint ci ratio: 6.444369e-01	ci left: 1.474505e-05	ci right 2.914560e-05	k: 36	n:1710000
Cons ci ratio: 2.133145e-02	ci left: 1.915947e-02	ci right 1.957315e-02	k: 33115	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
ACOT4   1710000 perm   1290 sec   (1325 perm/sec)   p_kst 5.847953e-07   p_cons 1.936550e-02   p_joint 2.105263e-05

Joint ci ratio: 6.359008e-01	ci left: 1.514622e-05	ci right 2.965082e-05	k: 37	n:1720000
Cons ci ratio: 2.126762e-02	ci left: 1.916316e-02	ci right 1.957567e-02	k: 33314	n:1720000
KS ci ratio: 2.263210e+00	ci left: 1.408194e-07	ci right 4.200393e-06	k: 2	n:1720000
ACOT4   1720000 perm   1304 sec   (1319 perm/sec)   p_kst 1.162791e-06   p_cons 1.936860e-02   p_joint 2.151163e-05

Joint ci ratio: 6.359008e-01	ci left: 1.505866e-05	ci right 2.947943e-05	k: 37	n:1730000
Cons ci ratio: 2.120790e-02	ci left: 1.916049e-02	ci right 1.957176e-02	k: 33502	n:1730000
KS ci ratio: 2.263210e+00	ci left: 1.400054e-07	ci right 4.176114e-06	k: 2	n:1730000
ACOT4   1730000 perm   1317 sec   (1313 perm/sec)   p_kst 1.156069e-06   p_cons 1.936532e-02   p_joint 2.138728e-05

Joint ci ratio: 6.359008e-01	ci left: 1.497212e-05	ci right 2.931001e-05	k: 37	n:1740000
Cons ci ratio: 2.114420e-02	ci left: 1.916585e-02	ci right 1.957599e-02	k: 33704	n:1740000
KS ci ratio: 2.263210e+00	ci left: 1.392008e-07	ci right 4.152113e-06	k: 2	n:1740000
ACOT4   1740000 perm   1331 sec   (1307 perm/sec)   p_kst 1.149425e-06   p_cons 1.937011e-02   p_joint 2.126437e-05

Joint ci ratio: 6.359009e-01	ci left: 1.488656e-05	ci right 2.914253e-05	k: 37	n:1750000
Cons ci ratio: 2.108519e-02	ci left: 1.916376e-02	ci right 1.957269e-02	k: 33893	n:1750000
KS ci ratio: 2.263210e+00	ci left: 1.384053e-07	ci right 4.128387e-06	k: 2	n:1750000
ACOT4   1750000 perm   1345 sec   (1301 perm/sec)   p_kst 1.142857e-06   p_cons 1.936743e-02   p_joint 2.114286e-05

Joint ci ratio: 6.359009e-01	ci left: 1.480198e-05	ci right 2.897695e-05	k: 37	n:1760000
Cons ci ratio: 2.102731e-02	ci left: 1.916056e-02	ci right 1.956830e-02	k: 34080	n:1760000
KS ci ratio: 2.263210e+00	ci left: 1.376189e-07	ci right 4.104930e-06	k: 2	n:1760000
ACOT4   1760000 perm   1359 sec   (1295 perm/sec)   p_kst 1.136364e-06   p_cons 1.936364e-02   p_joint 2.102273e-05

Joint ci ratio: 6.359010e-01	ci left: 1.471835e-05	ci right 2.881323e-05	k: 37	n:1770000
Cons ci ratio: 2.096366e-02	ci left: 1.916865e-02	ci right 1.957530e-02	k: 34287	n:1770000
KS ci ratio: 2.263210e+00	ci left: 1.368414e-07	ci right 4.081738e-06	k: 2	n:1770000
ACOT4   1770000 perm   1373 sec   (1290 perm/sec)   p_kst 1.129944e-06   p_cons 1.937119e-02   p_joint 2.090395e-05

Joint ci ratio: 6.276953e-01	ci left: 1.510738e-05	ci right 2.930211e-05	k: 38	n:1780000
Cons ci ratio: 2.090275e-02	ci left: 1.917273e-02	ci right 1.957828e-02	k: 34487	n:1780000
KS ci ratio: 2.263211e+00	ci left: 1.360727e-07	ci right 4.058807e-06	k: 2	n:1780000
ACOT4   1780000 perm   1387 sec   (1284 perm/sec)   p_kst 1.123596e-06   p_cons 1.937472e-02   p_joint 2.134831e-05

Joint ci ratio: 6.276953e-01	ci left: 1.502298e-05	ci right 2.913841e-05	k: 38	n:1790000
Cons ci ratio: 2.084481e-02	ci left: 1.917232e-02	ci right 1.957672e-02	k: 34679	n:1790000
KS ci ratio: 2.263211e+00	ci left: 1.353125e-07	ci right 4.036132e-06	k: 2	n:1790000
ACOT4   1790000 perm   1401 sec   (1278 perm/sec)   p_kst 1.117318e-06   p_cons 1.937374e-02   p_joint 2.122905e-05

Joint ci ratio: 6.276954e-01	ci left: 1.493952e-05	ci right 2.897654e-05	k: 38	n:1800000
Cons ci ratio: 2.078858e-02	ci left: 1.916971e-02	ci right 1.957295e-02	k: 34867	n:1800000
KS ci ratio: 2.263211e+00	ci left: 1.345607e-07	ci right 4.013710e-06	k: 2	n:1800000
ACOT4   1800000 perm   1415 sec   (1272 perm/sec)   p_kst 1.111111e-06   p_cons 1.937056e-02   p_joint 2.111111e-05

Joint ci ratio: 6.276954e-01	ci left: 1.485698e-05	ci right 2.881644e-05	k: 38	n:1810000
Cons ci ratio: 2.073913e-02	ci left: 1.915558e-02	ci right 1.955756e-02	k: 35034	n:1810000
KS ci ratio: 2.263211e+00	ci left: 1.338173e-07	ci right 3.991534e-06	k: 2	n:1810000
ACOT4   1810000 perm   1429 sec   (1267 perm/sec)   p_kst 1.104972e-06   p_cons 1.935580e-02   p_joint 2.099448e-05

Joint ci ratio: 6.276955e-01	ci left: 1.477535e-05	ci right 2.865811e-05	k: 38	n:1820000
Cons ci ratio: 2.067327e-02	ci left: 1.917223e-02	ci right 1.957326e-02	k: 35257	n:1820000
KS ci ratio: 2.263211e+00	ci left: 1.330820e-07	ci right 3.969603e-06	k: 2	n:1820000
ACOT4   1820000 perm   1443 sec   (1261 perm/sec)   p_kst 1.098901e-06   p_cons 1.937198e-02   p_joint 2.087912e-05

Joint ci ratio: 6.197995e-01	ci left: 1.515458e-05	ci right 2.913337e-05	k: 39	n:1830000
Cons ci ratio: 2.061040e-02	ci left: 1.918434e-02	ci right 1.958439e-02	k: 35472	n:1830000
KS ci ratio: 2.263211e+00	ci left: 1.323548e-07	ci right 3.947911e-06	k: 2	n:1830000
ACOT4   1830000 perm   1458 sec   (1255 perm/sec)   p_kst 1.092896e-06   p_cons 1.938361e-02   p_joint 2.131148e-05

Joint ci ratio: 6.121942e-01	ci left: 1.553080e-05	ci right 2.960241e-05	k: 40	n:1840000
Cons ci ratio: 2.055662e-02	ci left: 1.918065e-02	ci right 1.957956e-02	k: 35658	n:1840000
KS ci ratio: 2.263211e+00	ci left: 1.316355e-07	ci right 3.926455e-06	k: 2	n:1840000
ACOT4   1840000 perm   1472 sec   (1250 perm/sec)   p_kst 1.086957e-06   p_cons 1.937935e-02   p_joint 2.173913e-05

Joint ci ratio: 6.121942e-01	ci left: 1.544685e-05	ci right 2.944240e-05	k: 40	n:1850000
Cons ci ratio: 2.050093e-02	ci left: 1.918129e-02	ci right 1.957913e-02	k: 35852	n:1850000
KS ci ratio: 2.263211e+00	ci left: 1.309240e-07	ci right 3.905231e-06	k: 2	n:1850000
ACOT4   1850000 perm   1486 sec   (1245 perm/sec)   p_kst 1.081081e-06   p_cons 1.937946e-02   p_joint 2.162162e-05

Joint ci ratio: 6.048621e-01	ci left: 1.581849e-05	ci right 2.990372e-05	k: 41	n:1860000
Cons ci ratio: 2.044569e-02	ci left: 1.918194e-02	ci right 1.957870e-02	k: 36046	n:1860000
KS ci ratio: 2.263211e+00	ci left: 1.302201e-07	ci right 3.884235e-06	k: 2	n:1860000
ACOT4   1860000 perm   1501 sec   (1239 perm/sec)   p_kst 1.075269e-06   p_cons 1.937957e-02   p_joint 2.204301e-05

Joint ci ratio: 6.048622e-01	ci left: 1.573390e-05	ci right 2.974380e-05	k: 41	n:1870000
Cons ci ratio: 2.039146e-02	ci left: 1.918151e-02	ci right 1.957720e-02	k: 36238	n:1870000
KS ci ratio: 2.263211e+00	ci left: 1.295237e-07	ci right 3.863464e-06	k: 2	n:1870000
ACOT4   1870000 perm   1515 sec   (1234 perm/sec)   p_kst 1.069519e-06   p_cons 1.937861e-02   p_joint 2.192513e-05

Joint ci ratio: 6.048622e-01	ci left: 1.565021e-05	ci right 2.958559e-05	k: 41	n:1880000
Cons ci ratio: 2.033482e-02	ci left: 1.918638e-02	ci right 1.958106e-02	k: 36440	n:1880000
KS ci ratio: 2.263211e+00	ci left: 1.288347e-07	ci right 3.842914e-06	k: 2	n:1880000
ACOT4   1880000 perm   1530 sec   (1228 perm/sec)   p_kst 1.063830e-06   p_cons 1.938298e-02   p_joint 2.180851e-05

Joint ci ratio: 6.048623e-01	ci left: 1.556740e-05	ci right 2.942906e-05	k: 41	n:1890000
Cons ci ratio: 2.028006e-02	ci left: 1.918857e-02	ci right 1.958222e-02	k: 36637	n:1890000
KS ci ratio: 2.263211e+00	ci left: 1.281531e-07	ci right 3.822581e-06	k: 2	n:1890000
ACOT4   1890000 perm   1545 sec   (1223 perm/sec)   p_kst 1.058201e-06   p_cons 1.938466e-02   p_joint 2.169312e-05

Joint ci ratio: 6.048623e-01	ci left: 1.548547e-05	ci right 2.927417e-05	k: 41	n:1900000
Cons ci ratio: 2.022686e-02	ci left: 1.918864e-02	ci right 1.958125e-02	k: 36830	n:1900000
KS ci ratio: 2.263211e+00	ci left: 1.274786e-07	ci right 3.802462e-06	k: 2	n:1900000
ACOT4   1900000 perm   1560 sec   (1218 perm/sec)   p_kst 1.052632e-06   p_cons 1.938421e-02   p_joint 2.157895e-05

Joint ci ratio: 5.977875e-01	ci left: 1.584816e-05	ci right 2.972334e-05	k: 42	n:1910000
Cons ci ratio: 2.017936e-02	ci left: 1.917881e-02	ci right 1.957029e-02	k: 37004	n:1910000
KS ci ratio: 2.263211e+00	ci left: 1.268112e-07	ci right 3.782554e-06	k: 2	n:1910000
ACOT4   1910000 perm   1575 sec   (1213 perm/sec)   p_kst 1.047120e-06   p_cons 1.937382e-02   p_joint 2.198953e-05

Joint ci ratio: 5.977875e-01	ci left: 1.576562e-05	ci right 2.956853e-05	k: 42	n:1920000
Cons ci ratio: 2.013274e-02	ci left: 1.916806e-02	ci right 1.955840e-02	k: 37176	n:1920000
KS ci ratio: 2.263211e+00	ci left: 1.261507e-07	ci right 3.762853e-06	k: 2	n:1920000
ACOT4   1920000 perm   1590 sec   (1207 perm/sec)   p_kst 1.041667e-06   p_cons 1.936250e-02   p_joint 2.187500e-05

Joint ci ratio: 5.977876e-01	ci left: 1.568393e-05	ci right 2.941533e-05	k: 42	n:1930000
Cons ci ratio: 2.008096e-02	ci left: 1.916772e-02	ci right 1.955704e-02	k: 37368	n:1930000
KS ci ratio: 2.263211e+00	ci left: 1.254971e-07	ci right 3.743356e-06	k: 2	n:1930000
ACOT4   1930000 perm   1605 sec   (1202 perm/sec)   p_kst 1.036269e-06   p_cons 1.936166e-02   p_joint 2.176166e-05

Joint ci ratio: 5.977876e-01	ci left: 1.560309e-05	ci right 2.926370e-05	k: 42	n:1940000
Cons ci ratio: 2.002605e-02	ci left: 1.917406e-02	ci right 1.956243e-02	k: 37573	n:1940000
KS ci ratio: 2.263211e+00	ci left: 1.248502e-07	ci right 3.724061e-06	k: 2	n:1940000
ACOT4   1940000 perm   1621 sec   (1197 perm/sec)   p_kst 1.030928e-06   p_cons 1.936753e-02   p_joint 2.164948e-05

Joint ci ratio: 5.977877e-01	ci left: 1.552307e-05	ci right 2.911363e-05	k: 42	n:1950000
Cons ci ratio: 1.997239e-02	ci left: 1.917880e-02	ci right 1.956622e-02	k: 37775	n:1950000
KS ci ratio: 2.263211e+00	ci left: 1.242099e-07	ci right 3.704963e-06	k: 2	n:1950000
ACOT4   1950000 perm   1636 sec   (1192 perm/sec)   p_kst 1.025641e-06   p_cons 1.937179e-02   p_joint 2.153846e-05

Joint ci ratio: 5.977877e-01	ci left: 1.544387e-05	ci right 2.896509e-05	k: 42	n:1960000
Cons ci ratio: 1.992077e-02	ci left: 1.918045e-02	ci right 1.956689e-02	k: 37971	n:1960000
KS ci ratio: 2.263211e+00	ci left: 1.235762e-07	ci right 3.686060e-06	k: 2	n:1960000
ACOT4   1960000 perm   1651 sec   (1187 perm/sec)   p_kst 1.020408e-06   p_cons 1.937296e-02   p_joint 2.142857e-05

Joint ci ratio: 5.977877e-01	ci left: 1.536548e-05	ci right 2.881806e-05	k: 42	n:1970000
Cons ci ratio: 1.986795e-02	ci left: 1.918512e-02	ci right 1.957061e-02	k: 38173	n:1970000
KS ci ratio: 2.263211e+00	ci left: 1.229489e-07	ci right 3.667349e-06	k: 2	n:1970000
ACOT4   1970000 perm   1667 sec   (1182 perm/sec)   p_kst 1.015228e-06   p_cons 1.937716e-02   p_joint 2.131980e-05

Joint ci ratio: 5.977878e-01	ci left: 1.528787e-05	ci right 2.867252e-05	k: 42	n:1980000
Cons ci ratio: 1.982108e-02	ci left: 1.917918e-02	ci right 1.956364e-02	k: 38354	n:1980000
KS ci ratio: 2.263211e+00	ci left: 1.223279e-07	ci right 3.648827e-06	k: 2	n:1980000
ACOT4   1980000 perm   1682 sec   (1177 perm/sec)   p_kst 1.010101e-06   p_cons 1.937071e-02   p_joint 2.121212e-05

Joint ci ratio: 5.977878e-01	ci left: 1.521105e-05	ci right 2.852844e-05	k: 42	n:1990000
Cons ci ratio: 1.977297e-02	ci left: 1.917631e-02	ci right 1.955976e-02	k: 38541	n:1990000
KS ci ratio: 2.263211e+00	ci left: 1.217132e-07	ci right 3.630492e-06	k: 2	n:1990000
ACOT4   1990000 perm   1698 sec   (1172 perm/sec)   p_kst 1.005025e-06   p_cons 1.936734e-02   p_joint 2.110553e-05

Joint ci ratio: 5.909556e-01	ci left: 1.555970e-05	ci right 2.896025e-05	k: 43	n:2000000
Cons ci ratio: 1.972521e-02	ci left: 1.917347e-02	ci right 1.955593e-02	k: 38728	n:2000000
KS ci ratio: 2.263211e+00	ci left: 1.211047e-07	ci right 3.612339e-06	k: 2	n:2000000
ACOT4   2000000 perm   1713 sec   (1167 perm/sec)   p_kst 1.000000e-06   p_cons 1.936400e-02   p_joint 2.150000e-05

Joint ci ratio: 5.909556e-01	ci left: 1.548229e-05	ci right 2.881617e-05	k: 43	n:2010000
Cons ci ratio: 1.967805e-02	ci left: 1.917016e-02	ci right 1.955163e-02	k: 38914	n:2010000
KS ci ratio: 2.263211e+00	ci left: 1.205022e-07	ci right 3.594367e-06	k: 2	n:2010000
ACOT4   2010000 perm   1729 sec   (1163 perm/sec)   p_kst 9.950249e-07   p_cons 1.936020e-02   p_joint 2.139303e-05

Joint ci ratio: 5.977879e-01	ci left: 1.498514e-05	ci right 2.810475e-05	k: 42	n:2020000
Cons ci ratio: 1.962816e-02	ci left: 1.917280e-02	ci right 1.955334e-02	k: 39112	n:2020000
KS ci ratio: 2.263211e+00	ci left: 1.199056e-07	ci right 3.576573e-06	k: 2	n:2020000
ACOT4   2020000 perm   1745 sec   (1158 perm/sec)   p_kst 9.900990e-07   p_cons 1.936238e-02   p_joint 2.079208e-05

Joint ci ratio: 6.276962e-01	ci left: 1.324686e-05	ci right 2.569349e-05	k: 38	n:2030000
Cons ci ratio: 1.957890e-02	ci left: 1.917492e-02	ci right 1.955454e-02	k: 39309	n:2030000
KS ci ratio: 2.263211e+00	ci left: 1.193149e-07	ci right 3.558955e-06	k: 2	n:2030000
ACOT4   2030000 perm   1760 sec   (1153 perm/sec)   p_kst 9.852217e-07   p_cons 1.936404e-02   p_joint 1.871921e-05

Joint ci ratio: 6.359019e-01	ci left: 1.277033e-05	ci right 2.499973e-05	k: 37	n:2040000
Cons ci ratio: 1.952295e-02	ci left: 1.919068e-02	ci right 1.956951e-02	k: 39534	n:2040000
KS ci ratio: 2.263211e+00	ci left: 1.187301e-07	ci right 3.541509e-06	k: 2	n:2040000
ACOT4   2040000 perm   1776 sec   (1149 perm/sec)   p_kst 9.803922e-07   p_cons 1.937941e-02   p_joint 1.813725e-05

Joint ci ratio: 6.359019e-01	ci left: 1.270804e-05	ci right 2.487778e-05	k: 37	n:2050000
Cons ci ratio: 1.947573e-02	ci left: 1.919027e-02	ci right 1.956817e-02	k: 39726	n:2050000
KS ci ratio: 2.263211e+00	ci left: 1.181509e-07	ci right 3.524233e-06	k: 2	n:2050000
ACOT4   2050000 perm   1792 sec   (1144 perm/sec)   p_kst 9.756098e-07   p_cons 1.937854e-02   p_joint 1.804878e-05

Joint ci ratio: 6.359020e-01	ci left: 1.264635e-05	ci right 2.475702e-05	k: 37	n:2060000
Cons ci ratio: 1.943157e-02	ci left: 1.918455e-02	ci right 1.956147e-02	k: 39907	n:2060000
KS ci ratio: 2.263211e+00	ci left: 1.175773e-07	ci right 3.507125e-06	k: 2	n:2060000
ACOT4   2060000 perm   1808 sec   (1139 perm/sec)   p_kst 9.708738e-07   p_cons 1.937233e-02   p_joint 1.796117e-05

Joint ci ratio: 6.276963e-01	ci left: 1.299088e-05	ci right 2.519700e-05	k: 38	n:2070000
Cons ci ratio: 1.938648e-02	ci left: 1.918129e-02	ci right 1.955726e-02	k: 40093	n:2070000
KS ci ratio: 2.263211e+00	ci left: 1.170093e-07	ci right 3.490183e-06	k: 2	n:2070000
ACOT4   2070000 perm   1824 sec   (1135 perm/sec)   p_kst 9.661836e-07   p_cons 1.936860e-02   p_joint 1.835749e-05

Joint ci ratio: 6.276963e-01	ci left: 1.292843e-05	ci right 2.507586e-05	k: 38	n:2080000
Cons ci ratio: 1.934293e-02	ci left: 1.917567e-02	ci right 1.955067e-02	k: 40274	n:2080000
KS ci ratio: 2.263211e+00	ci left: 1.164468e-07	ci right 3.473403e-06	k: 2	n:2080000
ACOT4   2080000 perm   1840 sec   (1131 perm/sec)   p_kst 9.615385e-07   p_cons 1.936250e-02   p_joint 1.826923e-05

Joint ci ratio: 6.276964e-01	ci left: 1.286657e-05	ci right 2.495588e-05	k: 38	n:2090000
Cons ci ratio: 1.929749e-02	ci left: 1.917439e-02	ci right 1.954848e-02	k: 40464	n:2090000
KS ci ratio: 2.263211e+00	ci left: 1.158896e-07	ci right 3.456784e-06	k: 2	n:2090000
ACOT4   2090000 perm   1856 sec   (1126 perm/sec)   p_kst 9.569378e-07   p_cons 1.936077e-02   p_joint 1.818182e-05

Joint ci ratio: 6.276964e-01	ci left: 1.280530e-05	ci right 2.483704e-05	k: 38	n:2100000
Cons ci ratio: 1.924970e-02	ci left: 1.917833e-02	ci right 1.955157e-02	k: 40665	n:2100000
KS ci ratio: 2.263211e+00	ci left: 1.153378e-07	ci right 3.440323e-06	k: 2	n:2100000
ACOT4   2100000 perm   1873 sec   (1121 perm/sec)   p_kst 9.523810e-07   p_cons 1.936429e-02   p_joint 1.809524e-05

Joint ci ratio: 6.276964e-01	ci left: 1.274461e-05	ci right 2.471933e-05	k: 38	n:2110000
Cons ci ratio: 1.920946e-02	ci left: 1.916809e-02	ci right 1.954034e-02	k: 40836	n:2110000
KS ci ratio: 2.263211e+00	ci left: 1.147911e-07	ci right 3.424018e-06	k: 2	n:2110000
ACOT4   2110000 perm   1889 sec   (1117 perm/sec)   p_kst 9.478673e-07   p_cons 1.935355e-02   p_joint 1.800948e-05

Joint ci ratio: 6.198004e-01	ci left: 1.308155e-05	ci right 2.514816e-05	k: 39	n:2120000
Cons ci ratio: 1.916161e-02	ci left: 1.917344e-02	ci right 1.954485e-02	k: 41040	n:2120000
KS ci ratio: 2.263211e+00	ci left: 1.142497e-07	ci right 3.407867e-06	k: 2	n:2120000
ACOT4   2120000 perm   1905 sec   (1113 perm/sec)   p_kst 9.433962e-07   p_cons 1.935849e-02   p_joint 1.839623e-05

Joint ci ratio: 6.121951e-01	ci left: 1.341627e-05	ci right 2.557205e-05	k: 40	n:2130000
Cons ci ratio: 1.911648e-02	ci left: 1.917407e-02	ci right 1.954461e-02	k: 41234	n:2130000
KS ci ratio: 2.263211e+00	ci left: 1.137133e-07	ci right 3.391868e-06	k: 2	n:2130000
ACOT4   2130000 perm   1922 sec   (1108 perm/sec)   p_kst 9.389671e-07   p_cons 1.935869e-02   p_joint 1.877934e-05

Joint ci ratio: 6.121951e-01	ci left: 1.335358e-05	ci right 2.545255e-05	k: 40	n:2140000
Cons ci ratio: 1.907143e-02	ci left: 1.917516e-02	ci right 1.954484e-02	k: 41429	n:2140000
KS ci ratio: 2.263211e+00	ci left: 1.131819e-07	ci right 3.376018e-06	k: 2	n:2140000
ACOT4   2140000 perm   1938 sec   (1104 perm/sec)   p_kst 9.345794e-07   p_cons 1.935935e-02   p_joint 1.869159e-05

Joint ci ratio: 6.121952e-01	ci left: 1.329147e-05	ci right 2.533417e-05	k: 40	n:2150000
Cons ci ratio: 1.902135e-02	ci left: 1.918689e-02	ci right 1.955581e-02	k: 41647	n:2150000
KS ci ratio: 2.263211e+00	ci left: 1.126555e-07	ci right 3.360316e-06	k: 2	n:2150000
ACOT4   2150000 perm   1955 sec   (1100 perm/sec)   p_kst 9.302326e-07   p_cons 1.937070e-02   p_joint 1.860465e-05

Joint ci ratio: 6.121952e-01	ci left: 1.322993e-05	ci right 2.521688e-05	k: 40	n:2160000
Cons ci ratio: 1.897512e-02	ci left: 1.919159e-02	ci right 1.955970e-02	k: 41850	n:2160000
KS ci ratio: 2.263211e+00	ci left: 1.121339e-07	ci right 3.344759e-06	k: 2	n:2160000
ACOT4   2160000 perm   1972 sec   (1095 perm/sec)   p_kst 9.259259e-07   p_cons 1.937500e-02   p_joint 1.851852e-05

Joint ci ratio: 5.909561e-01	ci left: 1.434073e-05	ci right 2.669148e-05	k: 43	n:2170000
Cons ci ratio: 1.893106e-02	ci left: 1.919259e-02	ci right 1.955985e-02	k: 42045	n:2170000
KS ci ratio: 2.263211e+00	ci left: 1.116172e-07	ci right 3.329345e-06	k: 2	n:2170000
ACOT4   2170000 perm   1989 sec   (1091 perm/sec)   p_kst 9.216590e-07   p_cons 1.937558e-02   p_joint 1.981567e-05

Joint ci ratio: 5.909561e-01	ci left: 1.427495e-05	ci right 2.656905e-05	k: 43	n:2180000
Cons ci ratio: 1.888434e-02	ci left: 1.919951e-02	ci right 1.956599e-02	k: 42253	n:2180000
KS ci ratio: 2.263211e+00	ci left: 1.111052e-07	ci right 3.314073e-06	k: 2	n:2180000
ACOT4   2180000 perm   2006 sec   (1087 perm/sec)   p_kst 9.174312e-07   p_cons 1.938211e-02   p_joint 1.972477e-05

Joint ci ratio: 5.909562e-01	ci left: 1.420977e-05	ci right 2.644773e-05	k: 43	n:2190000
Cons ci ratio: 1.883910e-02	ci left: 1.920410e-02	ci right 1.956978e-02	k: 42456	n:2190000
KS ci ratio: 2.263211e+00	ci left: 1.105979e-07	ci right 3.298940e-06	k: 2	n:2190000
ACOT4   2190000 perm   2023 sec   (1082 perm/sec)   p_kst 9.132420e-07   p_cons 1.938630e-02   p_joint 1.963470e-05

Joint ci ratio: 5.909562e-01	ci left: 1.414518e-05	ci right 2.632751e-05	k: 43	n:2200000
Cons ci ratio: 1.879194e-02	ci left: 1.921317e-02	ci right 1.957809e-02	k: 42669	n:2200000
KS ci ratio: 2.263211e+00	ci left: 1.100951e-07	ci right 3.283945e-06	k: 2	n:2200000
ACOT4   2200000 perm   2040 sec   (1078 perm/sec)   p_kst 9.090909e-07   p_cons 1.939500e-02   p_joint 1.954545e-05

Joint ci ratio: 5.909562e-01	ci left: 1.408117e-05	ci right 2.620838e-05	k: 43	n:2210000
Cons ci ratio: 1.874803e-02	ci left: 1.921631e-02	ci right 1.958043e-02	k: 42869	n:2210000
KS ci ratio: 2.263211e+00	ci left: 1.095970e-07	ci right 3.269086e-06	k: 2	n:2210000
ACOT4   2210000 perm   2057 sec   (1074 perm/sec)   p_kst 9.049774e-07   p_cons 1.939774e-02   p_joint 1.945701e-05

Joint ci ratio: 5.909562e-01	ci left: 1.401774e-05	ci right 2.609033e-05	k: 43	n:2220000
Cons ci ratio: 1.869756e-02	ci left: 1.923332e-02	ci right 1.959677e-02	k: 43100	n:2220000
KS ci ratio: 2.263211e+00	ci left: 1.091033e-07	ci right 3.254360e-06	k: 2	n:2220000
ACOT4   2220000 perm   2074 sec   (1070 perm/sec)   p_kst 9.009009e-07   p_cons 1.941441e-02   p_joint 1.936937e-05

Joint ci ratio: 5.909563e-01	ci left: 1.395488e-05	ci right 2.597333e-05	k: 43	n:2230000
Cons ci ratio: 1.865914e-02	ci left: 1.922652e-02	ci right 1.958908e-02	k: 43278	n:2230000
KS ci ratio: 2.263211e+00	ci left: 1.086140e-07	ci right 3.239766e-06	k: 2	n:2230000
ACOT4   2230000 perm   2091 sec   (1067 perm/sec)   p_kst 8.968610e-07   p_cons 1.940717e-02   p_joint 1.928251e-05

Joint ci ratio: 5.909563e-01	ci left: 1.389258e-05	ci right 2.585738e-05	k: 43	n:2240000
Cons ci ratio: 1.861440e-02	ci left: 1.923311e-02	ci right 1.959492e-02	k: 43486	n:2240000
KS ci ratio: 2.263211e+00	ci left: 1.081292e-07	ci right 3.225303e-06	k: 2	n:2240000
ACOT4   2240000 perm   2108 sec   (1063 perm/sec)   p_kst 8.928571e-07   p_cons 1.941339e-02   p_joint 1.919643e-05

Joint ci ratio: 5.843531e-01	ci left: 1.420913e-05	ci right 2.625233e-05	k: 44	n:2250000
Cons ci ratio: 1.857931e-02	ci left: 1.922062e-02	ci right 1.958151e-02	k: 43651	n:2250000
KS ci ratio: 2.263211e+00	ci left: 1.076486e-07	ci right 3.210969e-06	k: 2	n:2250000
ACOT4   2250000 perm   2125 sec   (1059 perm/sec)   p_kst 8.888889e-07   p_cons 1.940044e-02   p_joint 1.955556e-05

Joint ci ratio: 5.843532e-01	ci left: 1.414626e-05	ci right 2.613617e-05	k: 44	n:2260000
Cons ci ratio: 1.853773e-02	ci left: 1.922190e-02	ci right 1.958199e-02	k: 43847	n:2260000
KS ci ratio: 2.263211e+00	ci left: 1.071723e-07	ci right 3.196761e-06	k: 2	n:2260000
ACOT4   2260000 perm   2142 sec   (1055 perm/sec)   p_kst 8.849558e-07   p_cons 1.940133e-02   p_joint 1.946903e-05

Joint ci ratio: 6.359025e-01	ci left: 1.147642e-05	ci right 2.246673e-05	k: 37	n:2270000
Cons ci ratio: 1.849429e-02	ci left: 1.922755e-02	ci right 1.958690e-02	k: 44053	n:2270000
KS ci ratio: 2.263211e+00	ci left: 1.067001e-07	ci right 3.182678e-06	k: 2	n:2270000
ACOT4   2270000 perm   2160 sec   (1051 perm/sec)   p_kst 8.810573e-07   p_cons 1.940661e-02   p_joint 1.629956e-05

Joint ci ratio: 6.359025e-01	ci left: 1.142608e-05	ci right 2.236819e-05	k: 37	n:2280000
Cons ci ratio: 1.845583e-02	ci left: 1.922354e-02	ci right 1.958206e-02	k: 44237	n:2280000
KS ci ratio: 2.263211e+00	ci left: 1.062322e-07	ci right 3.168719e-06	k: 2	n:2280000
ACOT4   2280000 perm   2178 sec   (1047 perm/sec)   p_kst 8.771930e-07   p_cons 1.940219e-02   p_joint 1.622807e-05

Joint ci ratio: 6.359026e-01	ci left: 1.137619e-05	ci right 2.227051e-05	k: 37	n:2290000
Cons ci ratio: 1.840768e-02	ci left: 1.924001e-02	ci right 1.959789e-02	k: 44468	n:2290000
KS ci ratio: 2.263211e+00	ci left: 1.057683e-07	ci right 3.154882e-06	k: 2	n:2290000
ACOT4   2290000 perm   2195 sec   (1043 perm/sec)   p_kst 8.733624e-07   p_cons 1.941834e-02   p_joint 1.615721e-05

Joint ci ratio: 6.359026e-01	ci left: 1.132673e-05	ci right 2.217368e-05	k: 37	n:2300000
Cons ci ratio: 1.836012e-02	ci left: 1.925590e-02	ci right 1.961314e-02	k: 44698	n:2300000
KS ci ratio: 2.263211e+00	ci left: 1.053084e-07	ci right 3.141165e-06	k: 2	n:2300000
ACOT4   2300000 perm   2213 sec   (1039 perm/sec)   p_kst 8.695652e-07   p_cons 1.943391e-02   p_joint 1.608696e-05

Joint ci ratio: 7.543998e-01	ci left: 7.352421e-06	ci right 1.649174e-05	k: 26	n:2310000
Cons ci ratio: 1.831687e-02	ci left: 1.926346e-02	ci right 1.961999e-02	k: 44909	n:2310000
KS ci ratio: 2.263211e+00	ci left: 1.048525e-07	ci right 3.127567e-06	k: 2	n:2310000
ACOT4   2310000 perm   2230 sec   (1036 perm/sec)   p_kst 8.658009e-07   p_cons 1.944113e-02   p_joint 1.125541e-05

Joint ci ratio: 7.543998e-01	ci left: 7.320730e-06	ci right 1.642066e-05	k: 26	n:2320000
Cons ci ratio: 1.827826e-02	ci left: 1.926195e-02	ci right 1.961770e-02	k: 45099	n:2320000
KS ci ratio: 2.263211e+00	ci left: 1.044006e-07	ci right 3.114086e-06	k: 2	n:2320000
ACOT4   2320000 perm   2248 sec   (1032 perm/sec)   p_kst 8.620690e-07   p_cons 1.943922e-02   p_joint 1.120690e-05

Joint ci ratio: 7.543998e-01	ci left: 7.289310e-06	ci right 1.635018e-05	k: 26	n:2330000
Cons ci ratio: 1.823743e-02	ci left: 1.926558e-02	ci right 1.962059e-02	k: 45301	n:2330000
KS ci ratio: 2.263211e+00	ci left: 1.039525e-07	ci right 3.100721e-06	k: 2	n:2330000
ACOT4   2330000 perm   2266 sec   (1028 perm/sec)   p_kst 8.583691e-07   p_cons 1.944249e-02   p_joint 1.115880e-05

Joint ci ratio: 7.543998e-01	ci left: 7.258159e-06	ci right 1.628031e-05	k: 26	n:2340000
Cons ci ratio: 1.820075e-02	ci left: 1.926110e-02	ci right 1.961530e-02	k: 45484	n:2340000
KS ci ratio: 2.263211e+00	ci left: 1.035083e-07	ci right 3.087470e-06	k: 2	n:2340000
ACOT4   2340000 perm   2284 sec   (1024 perm/sec)   p_kst 8.547009e-07   p_cons 1.943761e-02   p_joint 1.111111e-05

Joint ci ratio: 7.543999e-01	ci left: 7.227273e-06	ci right 1.621103e-05	k: 26	n:2350000
Cons ci ratio: 1.816186e-02	ci left: 1.926174e-02	ci right 1.961519e-02	k: 45679	n:2350000
KS ci ratio: 2.263211e+00	ci left: 1.030678e-07	ci right 3.074332e-06	k: 2	n:2350000
ACOT4   2350000 perm   2302 sec   (1021 perm/sec)   p_kst 8.510638e-07   p_cons 1.943787e-02   p_joint 1.106383e-05

Joint ci ratio: 7.543999e-01	ci left: 7.196649e-06	ci right 1.614234e-05	k: 26	n:2360000
Cons ci ratio: 1.812544e-02	ci left: 1.925773e-02	ci right 1.961040e-02	k: 45863	n:2360000
KS ci ratio: 2.263211e+00	ci left: 1.026311e-07	ci right 3.061305e-06	k: 2	n:2360000
ACOT4   2360000 perm   2321 sec   (1017 perm/sec)   p_kst 8.474576e-07   p_cons 1.943347e-02   p_joint 1.101695e-05

Joint ci ratio: 7.543999e-01	ci left: 7.166284e-06	ci right 1.607423e-05	k: 26	n:2370000
Cons ci ratio: 1.809223e-02	ci left: 1.924746e-02	ci right 1.959928e-02	k: 46032	n:2370000
KS ci ratio: 2.263211e+00	ci left: 1.021980e-07	ci right 3.048388e-06	k: 2	n:2370000
ACOT4   2370000 perm   2339 sec   (1013 perm/sec)   p_kst 8.438819e-07   p_cons 1.942278e-02   p_joint 1.097046e-05

Joint ci ratio: 7.543999e-01	ci left: 7.136173e-06	ci right 1.600669e-05	k: 26	n:2380000
Cons ci ratio: 1.805264e-02	ci left: 1.925108e-02	ci right 1.960219e-02	k: 46234	n:2380000
KS ci ratio: 2.263211e+00	ci left: 1.017686e-07	ci right 3.035580e-06	k: 2	n:2380000
ACOT4   2380000 perm   2357 sec   (1010 perm/sec)   p_kst 8.403361e-07   p_cons 1.942605e-02   p_joint 1.092437e-05

Joint ci ratio: 7.408059e-01	ci left: 7.444854e-06	ci right 1.643660e-05	k: 27	n:2390000
Cons ci ratio: 1.801449e-02	ci left: 1.925217e-02	ci right 1.960255e-02	k: 46430	n:2390000
KS ci ratio: 2.263211e+00	ci left: 1.013428e-07	ci right 3.022879e-06	k: 2	n:2390000
ACOT4   2390000 perm   2375 sec   (1006 perm/sec)   p_kst 8.368201e-07   p_cons 1.942678e-02   p_joint 1.129707e-05

Joint ci ratio: 7.408059e-01	ci left: 7.413834e-06	ci right 1.636812e-05	k: 27	n:2400000
Cons ci ratio: 1.797756e-02	ci left: 1.925118e-02	ci right 1.960082e-02	k: 46621	n:2400000
KS ci ratio: 2.263211e+00	ci left: 1.009205e-07	ci right 3.010283e-06	k: 2	n:2400000
ACOT4   2400000 perm   2394 sec   (1003 perm/sec)   p_kst 8.333333e-07   p_cons 1.942542e-02   p_joint 1.125000e-05

Joint ci ratio: 8.001625e-01	ci left: 6.049813e-06	ci right 1.432000e-05	k: 23	n:2410000
Cons ci ratio: 1.794301e-02	ci left: 1.924565e-02	ci right 1.959451e-02	k: 46801	n:2410000
KS ci ratio: 2.263211e+00	ci left: 1.005018e-07	ci right 2.997792e-06	k: 2	n:2410000
ACOT4   2410000 perm   2413 sec   (999 perm/sec)   p_kst 8.298755e-07   p_cons 1.941950e-02   p_joint 9.543568e-06

Joint ci ratio: 8.001625e-01	ci left: 6.024814e-06	ci right 1.426083e-05	k: 23	n:2420000
Cons ci ratio: 1.790710e-02	ci left: 1.924346e-02	ci right 1.959157e-02	k: 46989	n:2420000
KS ci ratio: 2.263211e+00	ci left: 1.000865e-07	ci right 2.985405e-06	k: 2	n:2420000
ACOT4   2420000 perm   2431 sec   (996 perm/sec)   p_kst 8.264463e-07   p_cons 1.941694e-02   p_joint 9.504132e-06

Joint ci ratio: 8.001625e-01	ci left: 6.000020e-06	ci right 1.420214e-05	k: 23	n:2430000
Cons ci ratio: 1.787238e-02	ci left: 1.923924e-02	ci right 1.958660e-02	k: 47172	n:2430000
KS ci ratio: 2.263211e+00	ci left: 9.967462e-08	ci right 2.973119e-06	k: 2	n:2430000
ACOT4   2430000 perm   2449 sec   (992 perm/sec)   p_kst 8.230453e-07   p_cons 1.941235e-02   p_joint 9.465021e-06

Joint ci ratio: 8.001626e-01	ci left: 5.975430e-06	ci right 1.414394e-05	k: 23	n:2440000
Cons ci ratio: 1.783670e-02	ci left: 1.923751e-02	ci right 1.958413e-02	k: 47361	n:2440000
KS ci ratio: 2.263211e+00	ci left: 9.926611e-08	ci right 2.960934e-06	k: 2	n:2440000
ACOT4   2440000 perm   2468 sec   (989 perm/sec)   p_kst 8.196721e-07   p_cons 1.941025e-02   p_joint 9.426230e-06

Joint ci ratio: 8.001626e-01	ci left: 5.951040e-06	ci right 1.408621e-05	k: 23	n:2450000
Cons ci ratio: 1.780582e-02	ci left: 1.922603e-02	ci right 1.957184e-02	k: 47526	n:2450000
KS ci ratio: 2.263211e+00	ci left: 9.886095e-08	ci right 2.948849e-06	k: 2	n:2450000
ACOT4   2450000 perm   2487 sec   (985 perm/sec)   p_kst 8.163265e-07   p_cons 1.939837e-02   p_joint 9.387755e-06

Joint ci ratio: 8.001626e-01	ci left: 5.926849e-06	ci right 1.402895e-05	k: 23	n:2460000
Cons ci ratio: 1.776864e-02	ci left: 1.922841e-02	ci right 1.957353e-02	k: 47725	n:2460000
KS ci ratio: 2.263211e+00	ci left: 9.845907e-08	ci right 2.936862e-06	k: 2	n:2460000
ACOT4   2460000 perm   2505 sec   (982 perm/sec)   p_kst 8.130081e-07   p_cons 1.940041e-02   p_joint 9.349593e-06

Joint ci ratio: 8.001626e-01	ci left: 5.902854e-06	ci right 1.397215e-05	k: 23	n:2470000
Cons ci ratio: 1.773132e-02	ci left: 1.923158e-02	ci right 1.957603e-02	k: 47926	n:2470000
KS ci ratio: 2.263211e+00	ci left: 9.806045e-08	ci right 2.924972e-06	k: 2	n:2470000
ACOT4   2470000 perm   2524 sec   (979 perm/sec)   p_kst 8.097166e-07   p_cons 1.940324e-02   p_joint 9.311741e-06

Joint ci ratio: 8.001626e-01	ci left: 5.879052e-06	ci right 1.391581e-05	k: 23	n:2480000
Cons ci ratio: 1.769892e-02	ci left: 1.922468e-02	ci right 1.956837e-02	k: 48102	n:2480000
KS ci ratio: 2.263211e+00	ci left: 9.766505e-08	ci right 2.913177e-06	k: 2	n:2480000
ACOT4   2480000 perm   2543 sec   (975 perm/sec)   p_kst 8.064516e-07   p_cons 1.939597e-02   p_joint 9.274194e-06

Joint ci ratio: 8.001626e-01	ci left: 5.855441e-06	ci right 1.385992e-05	k: 23	n:2490000
Cons ci ratio: 1.766837e-02	ci left: 1.921425e-02	ci right 1.955715e-02	k: 48269	n:2490000
KS ci ratio: 2.263211e+00	ci left: 9.727282e-08	ci right 2.901478e-06	k: 2	n:2490000
ACOT4   2490000 perm   2563 sec   (972 perm/sec)   p_kst 8.032129e-07   p_cons 1.938514e-02   p_joint 9.236948e-06

Joint ci ratio: 8.001626e-01	ci left: 5.832019e-06	ci right 1.380449e-05	k: 23	n:2500000
Cons ci ratio: 1.763557e-02	ci left: 1.920907e-02	ci right 1.955124e-02	k: 48449	n:2500000
KS ci ratio: 2.263211e+00	ci left: 9.688373e-08	ci right 2.889872e-06	k: 2	n:2500000
ACOT4   2500000 perm   2581 sec   (968 perm/sec)   p_kst 8.000000e-07   p_cons 1.937960e-02   p_joint 9.200000e-06

Joint ci ratio: 8.001627e-01	ci left: 5.808784e-06	ci right 1.374949e-05	k: 23	n:2510000
Cons ci ratio: 1.759815e-02	ci left: 1.921425e-02	ci right 1.955578e-02	k: 48655	n:2510000
KS ci ratio: 2.263211e+00	ci left: 9.649774e-08	ci right 2.878359e-06	k: 2	n:2510000
ACOT4   2510000 perm   2601 sec   (965 perm/sec)   p_kst 7.968127e-07   p_cons 1.938446e-02   p_joint 9.163347e-06

Joint ci ratio: 8.001627e-01	ci left: 5.785734e-06	ci right 1.369493e-05	k: 23	n:2520000
Cons ci ratio: 1.756299e-02	ci left: 1.921505e-02	ci right 1.955590e-02	k: 48850	n:2520000
KS ci ratio: 2.263211e+00	ci left: 9.611481e-08	ci right 2.866937e-06	k: 2	n:2520000
ACOT4   2520000 perm   2620 sec   (962 perm/sec)   p_kst 7.936508e-07   p_cons 1.938492e-02   p_joint 9.126984e-06

Joint ci ratio: 8.001627e-01	ci left: 5.762865e-06	ci right 1.364080e-05	k: 23	n:2530000
Cons ci ratio: 1.752476e-02	ci left: 1.922292e-02	ci right 1.956316e-02	k: 49063	n:2530000
KS ci ratio: 2.263211e+00	ci left: 9.573491e-08	ci right 2.855605e-06	k: 2	n:2530000
ACOT4   2530000 perm   2639 sec   (959 perm/sec)   p_kst 7.905138e-07   p_cons 1.939249e-02   p_joint 9.090909e-06

Joint ci ratio: 7.839960e-01	ci left: 6.054046e-06	ci right 1.405906e-05	k: 24	n:2540000
Cons ci ratio: 1.748533e-02	ci left: 1.923387e-02	ci right 1.957353e-02	k: 49284	n:2540000
KS ci ratio: 2.263211e+00	ci left: 9.535800e-08	ci right 2.844362e-06	k: 2	n:2540000
ACOT4   2540000 perm   2659 sec   (955 perm/sec)   p_kst 7.874016e-07   p_cons 1.940315e-02   p_joint 9.448819e-06

Joint ci ratio: 7.839960e-01	ci left: 6.030304e-06	ci right 1.400393e-05	k: 24	n:2550000
Cons ci ratio: 1.745515e-02	ci left: 1.922521e-02	ci right 1.956412e-02	k: 49455	n:2550000
KS ci ratio: 2.263211e+00	ci left: 9.498405e-08	ci right 2.833208e-06	k: 2	n:2550000
ACOT4   2550000 perm   2678 sec   (952 perm/sec)   p_kst 7.843137e-07   p_cons 1.939412e-02   p_joint 9.411765e-06

Joint ci ratio: 7.839960e-01	ci left: 6.006748e-06	ci right 1.394922e-05	k: 24	n:2560000
Cons ci ratio: 1.741637e-02	ci left: 1.923567e-02	ci right 1.957401e-02	k: 49675	n:2560000
KS ci ratio: 2.263211e+00	ci left: 9.461301e-08	ci right 2.822141e-06	k: 2	n:2560000
ACOT4   2560000 perm   2697 sec   (949 perm/sec)   p_kst 7.812500e-07   p_cons 1.940430e-02   p_joint 9.375000e-06

Joint ci ratio: 7.839960e-01	ci left: 5.983376e-06	ci right 1.389495e-05	k: 24	n:2570000
Cons ci ratio: 1.738281e-02	ci left: 1.923521e-02	ci right 1.957288e-02	k: 49867	n:2570000
KS ci ratio: 2.263211e+00	ci left: 9.424487e-08	ci right 2.811160e-06	k: 2	n:2570000
ACOT4   2570000 perm   2717 sec   (946 perm/sec)   p_kst 7.782101e-07   p_cons 1.940350e-02   p_joint 9.338521e-06

Joint ci ratio: 7.839960e-01	ci left: 5.960184e-06	ci right 1.384109e-05	k: 24	n:2580000
Cons ci ratio: 1.734945e-02	ci left: 1.923475e-02	ci right 1.957176e-02	k: 50059	n:2580000
KS ci ratio: 2.263211e+00	ci left: 9.387958e-08	ci right 2.800264e-06	k: 2	n:2580000
ACOT4   2580000 perm   2736 sec   (943 perm/sec)   p_kst 7.751938e-07   p_cons 1.940271e-02   p_joint 9.302326e-06

Joint ci ratio: 7.839961e-01	ci left: 5.937172e-06	ci right 1.378765e-05	k: 24	n:2590000
Cons ci ratio: 1.731945e-02	ci left: 1.922737e-02	ci right 1.956367e-02	k: 50233	n:2590000
KS ci ratio: 2.263211e+00	ci left: 9.351711e-08	ci right 2.789452e-06	k: 2	n:2590000
ACOT4   2590000 perm   2756 sec   (940 perm/sec)   p_kst 7.722008e-07   p_cons 1.939498e-02   p_joint 9.266409e-06

Joint ci ratio: 7.839961e-01	ci left: 5.914337e-06	ci right 1.373462e-05	k: 24	n:2600000
Cons ci ratio: 1.728435e-02	ci left: 1.923154e-02	ci right 1.956722e-02	k: 50437	n:2600000
KS ci ratio: 2.263211e+00	ci left: 9.315743e-08	ci right 2.778723e-06	k: 2	n:2600000
ACOT4   2600000 perm   2776 sec   (937 perm/sec)   p_kst 7.692308e-07   p_cons 1.939885e-02   p_joint 9.230769e-06

Joint ci ratio: 7.839961e-01	ci left: 5.891676e-06	ci right 1.368200e-05	k: 24	n:2610000
Cons ci ratio: 1.725312e-02	ci left: 1.922767e-02	ci right 1.956267e-02	k: 50620	n:2610000
KS ci ratio: 2.263211e+00	ci left: 9.280050e-08	ci right 2.768077e-06	k: 2	n:2610000
ACOT4   2610000 perm   2795 sec   (934 perm/sec)   p_kst 7.662835e-07   p_cons 1.939464e-02   p_joint 9.195402e-06

Joint ci ratio: 7.839961e-01	ci left: 5.869189e-06	ci right 1.362978e-05	k: 24	n:2620000
Cons ci ratio: 1.721877e-02	ci left: 1.923105e-02	ci right 1.956543e-02	k: 50822	n:2620000
KS ci ratio: 2.263211e+00	ci left: 9.244630e-08	ci right 2.757512e-06	k: 2	n:2620000
ACOT4   2620000 perm   2815 sec   (931 perm/sec)   p_kst 7.633588e-07   p_cons 1.939771e-02   p_joint 9.160305e-06

Joint ci ratio: 7.839961e-01	ci left: 5.846873e-06	ci right 1.357795e-05	k: 24	n:2630000
Cons ci ratio: 1.718360e-02	ci left: 1.923668e-02	ci right 1.957047e-02	k: 51030	n:2630000
KS ci ratio: 2.263211e+00	ci left: 9.209480e-08	ci right 2.747027e-06	k: 2	n:2630000
ACOT4   2630000 perm   2835 sec   (928 perm/sec)   p_kst 7.604563e-07   p_cons 1.940304e-02   p_joint 9.125475e-06

Joint ci ratio: 7.839961e-01	ci left: 5.824725e-06	ci right 1.352652e-05	k: 24	n:2640000
Cons ci ratio: 1.715035e-02	ci left: 1.923849e-02	ci right 1.957166e-02	k: 51228	n:2640000
KS ci ratio: 2.263211e+00	ci left: 9.174595e-08	ci right 2.736621e-06	k: 2	n:2640000
ACOT4   2640000 perm   2855 sec   (925 perm/sec)   p_kst 7.575758e-07   p_cons 1.940455e-02   p_joint 9.090909e-06

Joint ci ratio: 7.839962e-01	ci left: 5.802745e-06	ci right 1.347548e-05	k: 24	n:2650000
Cons ci ratio: 1.711797e-02	ci left: 1.923878e-02	ci right 1.957132e-02	k: 51422	n:2650000
KS ci ratio: 2.263211e+00	ci left: 9.139974e-08	ci right 2.726295e-06	k: 2	n:2650000
ACOT4   2650000 perm   2875 sec   (922 perm/sec)   p_kst 7.547170e-07   p_cons 1.940453e-02   p_joint 9.056604e-06

Joint ci ratio: 7.839962e-01	ci left: 5.780930e-06	ci right 1.342482e-05	k: 24	n:2660000
Cons ci ratio: 1.708965e-02	ci left: 1.923047e-02	ci right 1.956231e-02	k: 51593	n:2660000
KS ci ratio: 2.263211e+00	ci left: 9.105613e-08	ci right 2.716045e-06	k: 2	n:2660000
ACOT4   2660000 perm   2895 sec   (919 perm/sec)   p_kst 7.518797e-07   p_cons 1.939586e-02   p_joint 9.022556e-06

Joint ci ratio: 7.839962e-01	ci left: 5.759279e-06	ci right 1.337454e-05	k: 24	n:2670000
Cons ci ratio: 1.705610e-02	ci left: 1.923415e-02	ci right 1.956540e-02	k: 51796	n:2670000
KS ci ratio: 2.263211e+00	ci left: 9.071510e-08	ci right 2.705873e-06	k: 2	n:2670000
ACOT4   2670000 perm   2915 sec   (916 perm/sec)   p_kst 7.490637e-07   p_cons 1.939925e-02   p_joint 8.988764e-06

Joint ci ratio: 8.554106e-01	ci left: 4.558409e-06	ci right 1.152549e-05	k: 20	n:2680000
Cons ci ratio: 1.702341e-02	ci left: 1.923632e-02	ci right 1.956696e-02	k: 51995	n:2680000
KS ci ratio: 2.263211e+00	ci left: 9.037661e-08	ci right 2.695776e-06	k: 2	n:2680000
ACOT4   2680000 perm   2935 sec   (913 perm/sec)   p_kst 7.462687e-07   p_cons 1.940112e-02   p_joint 7.462687e-06

Joint ci ratio: 8.554106e-01	ci left: 4.541463e-06	ci right 1.148265e-05	k: 20	n:2690000
Cons ci ratio: 1.699340e-02	ci left: 1.923292e-02	ci right 1.956291e-02	k: 52179	n:2690000
KS ci ratio: 2.263211e+00	ci left: 9.004064e-08	ci right 2.685755e-06	k: 2	n:2690000
ACOT4   2690000 perm   2955 sec   (910 perm/sec)   p_kst 7.434944e-07   p_cons 1.939740e-02   p_joint 7.434944e-06

Joint ci ratio: 8.554106e-01	ci left: 4.524643e-06	ci right 1.144012e-05	k: 20	n:2700000
Cons ci ratio: 1.696141e-02	ci left: 1.923434e-02	ci right 1.956373e-02	k: 52376	n:2700000
KS ci ratio: 2.263211e+00	ci left: 8.970715e-08	ci right 2.675808e-06	k: 2	n:2700000
ACOT4   2700000 perm   2976 sec   (907 perm/sec)   p_kst 7.407407e-07   p_cons 1.939852e-02   p_joint 7.407407e-06

Joint ci ratio: 8.554107e-01	ci left: 4.507946e-06	ci right 1.139790e-05	k: 20	n:2710000
Cons ci ratio: 1.693205e-02	ci left: 1.923024e-02	ci right 1.955898e-02	k: 52558	n:2710000
KS ci ratio: 2.263211e+00	ci left: 8.937613e-08	ci right 2.665934e-06	k: 2	n:2710000
ACOT4   2710000 perm   2996 sec   (904 perm/sec)   p_kst 7.380074e-07   p_cons 1.939410e-02   p_joint 7.380074e-06

Joint ci ratio: 8.554107e-01	ci left: 4.491373e-06	ci right 1.135600e-05	k: 20	n:2720000
Cons ci ratio: 1.690073e-02	ci left: 1.923092e-02	ci right 1.955907e-02	k: 52753	n:2720000
KS ci ratio: 2.263211e+00	ci left: 8.904754e-08	ci right 2.656133e-06	k: 2	n:2720000
ACOT4   2720000 perm   3017 sec   (902 perm/sec)   p_kst 7.352941e-07   p_cons 1.939449e-02   p_joint 7.352941e-06

Joint ci ratio: 8.554107e-01	ci left: 4.474921e-06	ci right 1.131440e-05	k: 20	n:2730000
Cons ci ratio: 1.686795e-02	ci left: 1.923526e-02	ci right 1.956283e-02	k: 52958	n:2730000
KS ci ratio: 2.263211e+00	ci left: 8.872136e-08	ci right 2.646403e-06	k: 2	n:2730000
ACOT4   2730000 perm   3038 sec   (899 perm/sec)   p_kst 7.326007e-07   p_cons 1.939853e-02   p_joint 7.326007e-06

Joint ci ratio: 8.554107e-01	ci left: 4.458589e-06	ci right 1.127311e-05	k: 20	n:2740000
Cons ci ratio: 1.683633e-02	ci left: 1.923738e-02	ci right 1.956437e-02	k: 53157	n:2740000
KS ci ratio: 2.263211e+00	ci left: 8.839756e-08	ci right 2.636745e-06	k: 2	n:2740000
ACOT4   2740000 perm   3058 sec   (896 perm/sec)   p_kst 7.299270e-07   p_cons 1.940036e-02   p_joint 7.299270e-06

Joint ci ratio: 8.554107e-01	ci left: 4.442376e-06	ci right 1.123212e-05	k: 20	n:2750000
Cons ci ratio: 1.680746e-02	ci left: 1.923369e-02	ci right 1.956005e-02	k: 53340	n:2750000
KS ci ratio: 2.263211e+00	ci left: 8.807611e-08	ci right 2.627157e-06	k: 2	n:2750000
ACOT4   2750000 perm   3079 sec   (893 perm/sec)   p_kst 7.272727e-07   p_cons 1.939636e-02   p_joint 7.272727e-06

Joint ci ratio: 8.554107e-01	ci left: 4.426281e-06	ci right 1.119142e-05	k: 20	n:2760000
Cons ci ratio: 1.677650e-02	ci left: 1.923508e-02	ci right 1.956086e-02	k: 53537	n:2760000
KS ci ratio: 2.263211e+00	ci left: 8.775700e-08	ci right 2.617638e-06	k: 2	n:2760000
ACOT4   2760000 perm   3100 sec   (890 perm/sec)   p_kst 7.246377e-07   p_cons 1.939746e-02   p_joint 7.246377e-06

Joint ci ratio: 8.554107e-01	ci left: 4.410301e-06	ci right 1.115102e-05	k: 20	n:2770000
Cons ci ratio: 1.674571e-02	ci left: 1.923646e-02	ci right 1.956166e-02	k: 53734	n:2770000
KS ci ratio: 2.263211e+00	ci left: 8.744018e-08	ci right 2.608188e-06	k: 2	n:2770000
ACOT4   2770000 perm   3121 sec   (887 perm/sec)   p_kst 7.220217e-07   p_cons 1.939856e-02   p_joint 7.220217e-06

Joint ci ratio: 8.554107e-01	ci left: 4.394437e-06	ci right 1.111091e-05	k: 20	n:2780000
Cons ci ratio: 1.671114e-02	ci left: 1.924679e-02	ci right 1.957148e-02	k: 53956	n:2780000
KS ci ratio: 2.263211e+00	ci left: 8.712565e-08	ci right 2.598806e-06	k: 2	n:2780000
ACOT4   2780000 perm   3142 sec   (885 perm/sec)   p_kst 7.194245e-07   p_cons 1.940863e-02   p_joint 7.194245e-06

Joint ci ratio: 8.554108e-01	ci left: 4.378686e-06	ci right 1.107108e-05	k: 20	n:2790000
Cons ci ratio: 1.667945e-02	ci left: 1.925097e-02	ci right 1.957512e-02	k: 54161	n:2790000
KS ci ratio: 2.263211e+00	ci left: 8.681337e-08	ci right 2.589491e-06	k: 2	n:2790000
ACOT4   2790000 perm   3163 sec   (882 perm/sec)   p_kst 7.168459e-07   p_cons 1.941254e-02   p_joint 7.168459e-06

Joint ci ratio: 8.554108e-01	ci left: 4.363048e-06	ci right 1.103154e-05	k: 20	n:2800000
Cons ci ratio: 1.664935e-02	ci left: 1.925193e-02	ci right 1.957550e-02	k: 54357	n:2800000
KS ci ratio: 2.263211e+00	ci left: 8.650333e-08	ci right 2.580243e-06	k: 2	n:2800000
ACOT4   2800000 perm   3185 sec   (879 perm/sec)   p_kst 7.142857e-07   p_cons 1.941321e-02   p_joint 7.142857e-06

Joint ci ratio: 8.357434e-01	ci left: 4.626102e-06	ci right 1.142373e-05	k: 21	n:2810000
Cons ci ratio: 1.661863e-02	ci left: 1.925465e-02	ci right 1.957766e-02	k: 54558	n:2810000
KS ci ratio: 2.263211e+00	ci left: 8.619548e-08	ci right 2.571061e-06	k: 2	n:2810000
ACOT4   2810000 perm   3206 sec   (877 perm/sec)   p_kst 7.117438e-07   p_cons 1.941566e-02   p_joint 7.473310e-06

Joint ci ratio: 8.173730e-01	ci left: 4.889114e-06	ci right 1.181142e-05	k: 22	n:2820000
Cons ci ratio: 1.658978e-02	ci left: 1.925346e-02	ci right 1.957589e-02	k: 54748	n:2820000
KS ci ratio: 2.263211e+00	ci left: 8.588983e-08	ci right 2.561944e-06	k: 2	n:2820000
ACOT4   2820000 perm   3227 sec   (874 perm/sec)   p_kst 7.092199e-07   p_cons 1.941418e-02   p_joint 7.801418e-06

Joint ci ratio: 8.173730e-01	ci left: 4.871838e-06	ci right 1.176968e-05	k: 22	n:2830000
Cons ci ratio: 1.655632e-02	ci left: 1.926320e-02	ci right 1.958514e-02	k: 54969	n:2830000
KS ci ratio: 2.263211e+00	ci left: 8.558633e-08	ci right 2.552891e-06	k: 2	n:2830000
ACOT4   2830000 perm   3249 sec   (871 perm/sec)   p_kst 7.067138e-07   p_cons 1.942367e-02   p_joint 7.773852e-06

Joint ci ratio: 8.173730e-01	ci left: 4.854683e-06	ci right 1.172824e-05	k: 22	n:2840000
Cons ci ratio: 1.652718e-02	ci left: 1.926340e-02	ci right 1.958477e-02	k: 55163	n:2840000
KS ci ratio: 2.263211e+00	ci left: 8.528497e-08	ci right 2.543902e-06	k: 2	n:2840000
ACOT4   2840000 perm   3270 sec   (868 perm/sec)   p_kst 7.042254e-07   p_cons 1.942359e-02   p_joint 7.746479e-06

Joint ci ratio: 8.173731e-01	ci left: 4.837649e-06	ci right 1.168709e-05	k: 22	n:2850000
Cons ci ratio: 1.649774e-02	ci left: 1.926465e-02	ci right 1.958546e-02	k: 55360	n:2850000
KS ci ratio: 2.263211e+00	ci left: 8.498572e-08	ci right 2.534976e-06	k: 2	n:2850000
ACOT4   2850000 perm   3292 sec   (866 perm/sec)   p_kst 7.017544e-07   p_cons 1.942456e-02   p_joint 7.719298e-06

Joint ci ratio: 8.173731e-01	ci left: 4.820734e-06	ci right 1.164622e-05	k: 22	n:2860000
Cons ci ratio: 1.646574e-02	ci left: 1.927215e-02	ci right 1.959246e-02	k: 55575	n:2860000
KS ci ratio: 2.263211e+00	ci left: 8.468857e-08	ci right 2.526112e-06	k: 2	n:2860000
ACOT4   2860000 perm   3313 sec   (863 perm/sec)   p_kst 6.993007e-07   p_cons 1.943182e-02   p_joint 7.692308e-06

Joint ci ratio: 8.173731e-01	ci left: 4.803937e-06	ci right 1.160564e-05	k: 22	n:2870000
Cons ci ratio: 1.643918e-02	ci left: 1.926746e-02	ci right 1.958717e-02	k: 55755	n:2870000
KS ci ratio: 2.263211e+00	ci left: 8.439349e-08	ci right 2.517310e-06	k: 2	n:2870000
ACOT4   2870000 perm   3335 sec   (861 perm/sec)   p_kst 6.968641e-07   p_cons 1.942683e-02   p_joint 7.665505e-06

Joint ci ratio: 8.173731e-01	ci left: 4.787257e-06	ci right 1.156535e-05	k: 22	n:2880000
Cons ci ratio: 1.640886e-02	ci left: 1.927179e-02	ci right 1.959098e-02	k: 55961	n:2880000
KS ci ratio: 2.263211e+00	ci left: 8.410045e-08	ci right 2.508570e-06	k: 2	n:2880000
ACOT4   2880000 perm   3357 sec   (858 perm/sec)   p_kst 6.944444e-07   p_cons 1.943090e-02   p_joint 7.638889e-06

Joint ci ratio: 8.173731e-01	ci left: 4.770692e-06	ci right 1.152533e-05	k: 22	n:2890000
Cons ci ratio: 1.637782e-02	ci left: 1.927817e-02	ci right 1.959685e-02	k: 56173	n:2890000
KS ci ratio: 2.263211e+00	ci left: 8.380945e-08	ci right 2.499890e-06	k: 2	n:2890000
ACOT4   2890000 perm   3378 sec   (855 perm/sec)   p_kst 6.920415e-07   p_cons 1.943702e-02   p_joint 7.612457e-06

Joint ci ratio: 8.173731e-01	ci left: 4.754241e-06	ci right 1.148559e-05	k: 22	n:2900000
Cons ci ratio: 1.634902e-02	ci left: 1.927969e-02	ci right 1.959783e-02	k: 56371	n:2900000
KS ci ratio: 2.263211e+00	ci left: 8.352045e-08	ci right 2.491269e-06	k: 2	n:2900000
ACOT4   2900000 perm   3400 sec   (853 perm/sec)   p_kst 6.896552e-07   p_cons 1.943828e-02   p_joint 7.586207e-06

Joint ci ratio: 8.173731e-01	ci left: 4.737904e-06	ci right 1.144612e-05	k: 22	n:2910000
Cons ci ratio: 1.632273e-02	ci left: 1.927572e-02	ci right 1.959328e-02	k: 56553	n:2910000
KS ci ratio: 2.263211e+00	ci left: 8.323344e-08	ci right 2.482708e-06	k: 2	n:2910000
ACOT4   2910000 perm   3422 sec   (850 perm/sec)   p_kst 6.872852e-07   p_cons 1.943402e-02   p_joint 7.560137e-06

Joint ci ratio: 8.173731e-01	ci left: 4.721678e-06	ci right 1.140692e-05	k: 22	n:2920000
Cons ci ratio: 1.629363e-02	ci left: 1.927860e-02	ci right 1.959564e-02	k: 56755	n:2920000
KS ci ratio: 2.263212e+00	ci left: 8.294839e-08	ci right 2.474206e-06	k: 2	n:2920000
ACOT4   2920000 perm   3444 sec   (848 perm/sec)   p_kst 6.849315e-07   p_cons 1.943664e-02   p_joint 7.534247e-06

Joint ci ratio: 8.173732e-01	ci left: 4.705563e-06	ci right 1.136799e-05	k: 22	n:2930000
Cons ci ratio: 1.626527e-02	ci left: 1.928011e-02	ci right 1.959661e-02	k: 56953	n:2930000
KS ci ratio: 2.263212e+00	ci left: 8.266529e-08	ci right 2.465762e-06	k: 2	n:2930000
ACOT4   2930000 perm   3465 sec   (845 perm/sec)   p_kst 6.825939e-07   p_cons 1.943788e-02   p_joint 7.508532e-06

Joint ci ratio: 8.173732e-01	ci left: 4.689558e-06	ci right 1.132932e-05	k: 22	n:2940000
Cons ci ratio: 1.623822e-02	ci left: 1.927889e-02	ci right 1.959484e-02	k: 57143	n:2940000
KS ci ratio: 2.263212e+00	ci left: 8.238412e-08	ci right 2.457375e-06	k: 2	n:2940000
ACOT4   2940000 perm   3488 sec   (843 perm/sec)   p_kst 6.802721e-07   p_cons 1.943639e-02   p_joint 7.482993e-06

Joint ci ratio: 8.173732e-01	ci left: 4.673661e-06	ci right 1.129092e-05	k: 22	n:2950000
Cons ci ratio: 1.620871e-02	ci left: 1.928376e-02	ci right 1.959921e-02	k: 57351	n:2950000
KS ci ratio: 2.263212e+00	ci left: 8.210485e-08	ci right 2.449044e-06	k: 2	n:2950000
ACOT4   2950000 perm   3510 sec   (840 perm/sec)   p_kst 6.779661e-07   p_cons 1.944102e-02   p_joint 7.457627e-06

Joint ci ratio: 8.173732e-01	ci left: 4.657872e-06	ci right 1.125277e-05	k: 22	n:2960000
Cons ci ratio: 1.618495e-02	ci left: 1.927548e-02	ci right 1.959033e-02	k: 57520	n:2960000
KS ci ratio: 2.263212e+00	ci left: 8.182747e-08	ci right 2.440771e-06	k: 2	n:2960000
ACOT4   2960000 perm   3532 sec   (838 perm/sec)   p_kst 6.756757e-07   p_cons 1.943243e-02   p_joint 7.432432e-06

Joint ci ratio: 8.173732e-01	ci left: 4.642188e-06	ci right 1.121488e-05	k: 22	n:2970000
Cons ci ratio: 1.615787e-02	ci left: 1.927530e-02	ci right 1.958961e-02	k: 57713	n:2970000
KS ci ratio: 2.263212e+00	ci left: 8.155196e-08	ci right 2.432553e-06	k: 2	n:2970000
ACOT4   2970000 perm   3554 sec   (836 perm/sec)   p_kst 6.734007e-07   p_cons 1.943199e-02   p_joint 7.407407e-06

Joint ci ratio: 8.173732e-01	ci left: 4.626611e-06	ci right 1.117725e-05	k: 22	n:2980000
Cons ci ratio: 1.613178e-02	ci left: 1.927311e-02	ci right 1.958688e-02	k: 57900	n:2980000
KS ci ratio: 2.263212e+00	ci left: 8.127829e-08	ci right 2.424390e-06	k: 2	n:2980000
ACOT4   2980000 perm   3576 sec   (833 perm/sec)   p_kst 6.711409e-07   p_cons 1.942953e-02   p_joint 7.382550e-06

Joint ci ratio: 8.001633e-01	ci left: 4.876269e-06	ci right 1.154222e-05	k: 23	n:2990000
Cons ci ratio: 1.610412e-02	ci left: 1.927494e-02	ci right 1.958820e-02	k: 58099	n:2990000
KS ci ratio: 2.263212e+00	ci left: 8.100646e-08	ci right 2.416281e-06	k: 2	n:2990000
ACOT4   2990000 perm   3599 sec   (831 perm/sec)   p_kst 6.688963e-07   p_cons 1.943110e-02   p_joint 7.692308e-06

Joint ci ratio: 8.001633e-01	ci left: 4.860015e-06	ci right 1.150374e-05	k: 23	n:3000000
Cons ci ratio: 1.607899e-02	ci left: 1.927112e-02	ci right 1.958381e-02	k: 58281	n:3000000
KS ci ratio: 2.263212e+00	ci left: 8.073644e-08	ci right 2.408227e-06	k: 2	n:3000000
ACOT4   3000000 perm   3621 sec   (828 perm/sec)   p_kst 6.666667e-07   p_cons 1.942700e-02   p_joint 7.666667e-06

Joint ci ratio: 8.001633e-01	ci left: 4.843869e-06	ci right 1.146552e-05	k: 23	n:3010000
Cons ci ratio: 1.605439e-02	ci left: 1.926632e-02	ci right 1.957846e-02	k: 58460	n:3010000
KS ci ratio: 2.263212e+00	ci left: 8.046821e-08	ci right 2.400226e-06	k: 2	n:3010000
ACOT4   3010000 perm   3644 sec   (826 perm/sec)   p_kst 6.644518e-07   p_cons 1.942193e-02   p_joint 7.641196e-06

Joint ci ratio: 8.001633e-01	ci left: 4.827829e-06	ci right 1.142756e-05	k: 23	n:3020000
Cons ci ratio: 1.603033e-02	ci left: 1.926057e-02	ci right 1.957214e-02	k: 58636	n:3020000
KS ci ratio: 2.263212e+00	ci left: 8.020176e-08	ci right 2.392279e-06	k: 2	n:3020000
ACOT4   3020000 perm   3667 sec   (824 perm/sec)   p_kst 6.622517e-07   p_cons 1.941589e-02   p_joint 7.615894e-06

Joint ci ratio: 8.001633e-01	ci left: 4.811896e-06	ci right 1.138984e-05	k: 23	n:3030000
Cons ci ratio: 1.600554e-02	ci left: 1.925683e-02	ci right 1.956785e-02	k: 58818	n:3030000
KS ci ratio: 2.263212e+00	ci left: 7.993707e-08	ci right 2.384383e-06	k: 2	n:3030000
ACOT4   3030000 perm   3690 sec   (821 perm/sec)   p_kst 6.600660e-07   p_cons 1.941188e-02   p_joint 7.590759e-06

Joint ci ratio: 8.001634e-01	ci left: 4.796067e-06	ci right 1.135238e-05	k: 23	n:3040000
Cons ci ratio: 1.598115e-02	ci left: 1.925246e-02	ci right 1.956293e-02	k: 58998	n:3040000
KS ci ratio: 2.263212e+00	ci left: 7.967411e-08	ci right 2.376540e-06	k: 2	n:3040000
ACOT4   3040000 perm   3712 sec   (819 perm/sec)   p_kst 6.578947e-07   p_cons 1.940724e-02   p_joint 7.565789e-06

Joint ci ratio: 8.001634e-01	ci left: 4.780343e-06	ci right 1.131516e-05	k: 23	n:3050000
Cons ci ratio: 1.595631e-02	ci left: 1.924942e-02	ci right 1.955936e-02	k: 59182	n:3050000
KS ci ratio: 2.263212e+00	ci left: 7.941289e-08	ci right 2.368748e-06	k: 2	n:3050000
ACOT4   3050000 perm   3736 sec   (816 perm/sec)   p_kst 6.557377e-07   p_cons 1.940393e-02   p_joint 7.540984e-06

Joint ci ratio: 8.001634e-01	ci left: 4.764720e-06	ci right 1.127818e-05	k: 23	n:3060000
Cons ci ratio: 1.592940e-02	ci left: 1.925161e-02	ci right 1.956106e-02	k: 59382	n:3060000
KS ci ratio: 2.263212e+00	ci left: 7.915337e-08	ci right 2.361007e-06	k: 2	n:3060000
ACOT4   3060000 perm   3759 sec   (814 perm/sec)   p_kst 6.535948e-07   p_cons 1.940588e-02   p_joint 7.516340e-06

Joint ci ratio: 8.001634e-01	ci left: 4.749200e-06	ci right 1.124144e-05	k: 23	n:3070000
Cons ci ratio: 1.590290e-02	ci left: 1.925314e-02	ci right 1.956210e-02	k: 59580	n:3070000
KS ci ratio: 2.263212e+00	ci left: 7.889554e-08	ci right 2.353316e-06	k: 2	n:3070000
ACOT4   3070000 perm   3782 sec   (812 perm/sec)   p_kst 6.514658e-07   p_cons 1.940717e-02   p_joint 7.491857e-06

Joint ci ratio: 8.001634e-01	ci left: 4.733781e-06	ci right 1.120494e-05	k: 23	n:3080000
Cons ci ratio: 1.587708e-02	ci left: 1.925337e-02	ci right 1.956182e-02	k: 59774	n:3080000
KS ci ratio: 2.263212e+00	ci left: 7.863939e-08	ci right 2.345676e-06	k: 2	n:3080000
ACOT4   3080000 perm   3805 sec   (809 perm/sec)   p_kst 6.493506e-07   p_cons 1.940714e-02   p_joint 7.467532e-06

Joint ci ratio: 8.001634e-01	ci left: 4.718461e-06	ci right 1.116868e-05	k: 23	n:3090000
Cons ci ratio: 1.585286e-02	ci left: 1.925005e-02	ci right 1.955797e-02	k: 59957	n:3090000
KS ci ratio: 2.263212e+00	ci left: 7.838489e-08	ci right 2.338085e-06	k: 2	n:3090000
ACOT4   3090000 perm   3828 sec   (807 perm/sec)   p_kst 6.472492e-07   p_cons 1.940356e-02   p_joint 7.443366e-06

Joint ci ratio: 8.001634e-01	ci left: 4.703240e-06	ci right 1.113265e-05	k: 23	n:3100000
Cons ci ratio: 1.582754e-02	ci left: 1.924964e-02	ci right 1.955706e-02	k: 60149	n:3100000
KS ci ratio: 2.263212e+00	ci left: 7.813203e-08	ci right 2.330542e-06	k: 2	n:3100000
ACOT4   3100000 perm   3851 sec   (805 perm/sec)   p_kst 6.451613e-07   p_cons 1.940290e-02   p_joint 7.419355e-06

Joint ci ratio: 8.001634e-01	ci left: 4.688117e-06	ci right 1.109686e-05	k: 23	n:3110000
Cons ci ratio: 1.580288e-02	ci left: 1.924796e-02	ci right 1.955487e-02	k: 60337	n:3110000
KS ci ratio: 2.263212e+00	ci left: 7.788081e-08	ci right 2.323049e-06	k: 2	n:3110000
ACOT4   3110000 perm   3875 sec   (803 perm/sec)   p_kst 6.430868e-07   p_cons 1.940096e-02   p_joint 7.395498e-06

Joint ci ratio: 8.001634e-01	ci left: 4.673091e-06	ci right 1.106129e-05	k: 23	n:3120000
Cons ci ratio: 1.577594e-02	ci left: 1.925203e-02	ci right 1.955848e-02	k: 60543	n:3120000
KS ci ratio: 2.263212e+00	ci left: 7.763119e-08	ci right 2.315603e-06	k: 2	n:3120000
ACOT4   3120000 perm   3899 sec   (800 perm/sec)   p_kst 6.410256e-07   p_cons 1.940481e-02   p_joint 7.371795e-06

Joint ci ratio: 8.001635e-01	ci left: 4.658161e-06	ci right 1.102595e-05	k: 23	n:3130000
Cons ci ratio: 1.574874e-02	ci left: 1.925703e-02	ci right 1.956303e-02	k: 60752	n:3130000
KS ci ratio: 2.263212e+00	ci left: 7.738317e-08	ci right 2.308205e-06	k: 2	n:3130000
ACOT4   3130000 perm   3922 sec   (798 perm/sec)   p_kst 6.389776e-07   p_cons 1.940958e-02   p_joint 7.348243e-06

Joint ci ratio: 8.001635e-01	ci left: 4.643326e-06	ci right 1.099084e-05	k: 23	n:3140000
Cons ci ratio: 1.572379e-02	ci left: 1.925693e-02	ci right 1.956243e-02	k: 60945	n:3140000
KS ci ratio: 2.263212e+00	ci left: 7.713672e-08	ci right 2.300854e-06	k: 2	n:3140000
ACOT4   3140000 perm   3945 sec   (796 perm/sec)   p_kst 6.369427e-07   p_cons 1.940924e-02   p_joint 7.324841e-06

Joint ci ratio: 7.839968e-01	ci left: 4.881673e-06	ci right 1.133652e-05	k: 24	n:3150000
Cons ci ratio: 1.569751e-02	ci left: 1.926030e-02	ci right 1.956534e-02	k: 61149	n:3150000
KS ci ratio: 2.263212e+00	ci left: 7.689184e-08	ci right 2.293550e-06	k: 2	n:3150000
ACOT4   3150000 perm   3969 sec   (794 perm/sec)   p_kst 6.349206e-07   p_cons 1.941238e-02   p_joint 7.619048e-06

Joint ci ratio: 7.839968e-01	ci left: 4.866225e-06	ci right 1.130064e-05	k: 24	n:3160000
Cons ci ratio: 1.567502e-02	ci left: 1.925483e-02	ci right 1.955934e-02	k: 61325	n:3160000
KS ci ratio: 2.263212e+00	ci left: 7.664851e-08	ci right 2.286292e-06	k: 2	n:3160000
ACOT4   3160000 perm   3992 sec   (792 perm/sec)   p_kst 6.329114e-07   p_cons 1.940665e-02   p_joint 7.594937e-06

Joint ci ratio: 7.839968e-01	ci left: 4.850874e-06	ci right 1.126499e-05	k: 24	n:3170000
Cons ci ratio: 1.564925e-02	ci left: 1.925756e-02	ci right 1.956161e-02	k: 61527	n:3170000
KS ci ratio: 2.263212e+00	ci left: 7.640672e-08	ci right 2.279079e-06	k: 2	n:3170000
ACOT4   3170000 perm   4016 sec   (789 perm/sec)   p_kst 6.309148e-07   p_cons 1.940915e-02   p_joint 7.570978e-06

Joint ci ratio: 7.839968e-01	ci left: 4.835620e-06	ci right 1.122957e-05	k: 24	n:3180000
Cons ci ratio: 1.562205e-02	ci left: 1.926404e-02	ci right 1.956766e-02	k: 61741	n:3180000
KS ci ratio: 2.263212e+00	ci left: 7.616645e-08	ci right 2.271912e-06	k: 2	n:3180000
ACOT4   3180000 perm   4040 sec   (787 perm/sec)   p_kst 6.289308e-07   p_cons 1.941541e-02   p_joint 7.547170e-06

Joint ci ratio: 7.839968e-01	ci left: 4.820461e-06	ci right 1.119437e-05	k: 24	n:3190000
Cons ci ratio: 1.559744e-02	ci left: 1.926454e-02	ci right 1.956768e-02	k: 61936	n:3190000
KS ci ratio: 2.263212e+00	ci left: 7.592768e-08	ci right 2.264791e-06	k: 2	n:3190000
ACOT4   3190000 perm   4064 sec   (785 perm/sec)   p_kst 6.269592e-07   p_cons 1.941567e-02   p_joint 7.523511e-06

Joint ci ratio: 7.839968e-01	ci left: 4.805397e-06	ci right 1.115939e-05	k: 24	n:3200000
Cons ci ratio: 1.557141e-02	ci left: 1.926877e-02	ci right 1.957147e-02	k: 62143	n:3200000
KS ci ratio: 2.263212e+00	ci left: 7.569041e-08	ci right 2.257713e-06	k: 2	n:3200000
ACOT4   3200000 perm   4088 sec   (783 perm/sec)   p_kst 6.250000e-07   p_cons 1.941969e-02   p_joint 7.500000e-06

Joint ci ratio: 7.839968e-01	ci left: 4.790427e-06	ci right 1.112462e-05	k: 24	n:3210000
Cons ci ratio: 1.554856e-02	ci left: 1.926553e-02	ci right 1.956773e-02	k: 62326	n:3210000
KS ci ratio: 2.263212e+00	ci left: 7.545461e-08	ci right 2.250680e-06	k: 2	n:3210000
ACOT4   3210000 perm   4112 sec   (781 perm/sec)   p_kst 6.230530e-07   p_cons 1.941620e-02   p_joint 7.476636e-06

Joint ci ratio: 7.839968e-01	ci left: 4.775550e-06	ci right 1.109007e-05	k: 24	n:3220000
Cons ci ratio: 1.552391e-02	ci left: 1.926695e-02	ci right 1.956869e-02	k: 62524	n:3220000
KS ci ratio: 2.263212e+00	ci left: 7.522028e-08	ci right 2.243690e-06	k: 2	n:3220000
ACOT4   3220000 perm   4136 sec   (779 perm/sec)   p_kst 6.211180e-07   p_cons 1.941739e-02   p_joint 7.453416e-06

Joint ci ratio: 7.839968e-01	ci left: 4.760765e-06	ci right 1.105574e-05	k: 24	n:3230000
Cons ci ratio: 1.550039e-02	ci left: 1.926590e-02	ci right 1.956716e-02	k: 62714	n:3230000
KS ci ratio: 2.263212e+00	ci left: 7.498740e-08	ci right 2.236744e-06	k: 2	n:3230000
ACOT4   3230000 perm   4160 sec   (776 perm/sec)   p_kst 6.191950e-07   p_cons 1.941610e-02   p_joint 7.430341e-06

Joint ci ratio: 7.839969e-01	ci left: 4.746071e-06	ci right 1.102162e-05	k: 24	n:3240000
Cons ci ratio: 1.547685e-02	ci left: 1.926516e-02	ci right 1.956595e-02	k: 62905	n:3240000
KS ci ratio: 2.263212e+00	ci left: 7.475596e-08	ci right 2.229840e-06	k: 2	n:3240000
ACOT4   3240000 perm   4184 sec   (774 perm/sec)   p_kst 6.172840e-07   p_cons 1.941512e-02   p_joint 7.407407e-06

Joint ci ratio: 7.839969e-01	ci left: 4.731468e-06	ci right 1.098770e-05	k: 24	n:3250000
Cons ci ratio: 1.545279e-02	ci left: 1.926595e-02	ci right 1.956629e-02	k: 63101	n:3250000
KS ci ratio: 2.263212e+00	ci left: 7.452594e-08	ci right 2.222979e-06	k: 2	n:3250000
ACOT4   3250000 perm   4209 sec   (772 perm/sec)   p_kst 6.153846e-07   p_cons 1.941569e-02   p_joint 7.384615e-06

Joint ci ratio: 7.839969e-01	ci left: 4.716954e-06	ci right 1.095400e-05	k: 24	n:3260000
Cons ci ratio: 1.542797e-02	ci left: 1.926889e-02	ci right 1.956878e-02	k: 63304	n:3260000
KS ci ratio: 2.263212e+00	ci left: 7.429733e-08	ci right 2.216160e-06	k: 2	n:3260000
ACOT4   3260000 perm   4233 sec   (770 perm/sec)   p_kst 6.134969e-07   p_cons 1.941840e-02   p_joint 7.361963e-06

Joint ci ratio: 7.839969e-01	ci left: 4.702529e-06	ci right 1.092050e-05	k: 24	n:3270000
Cons ci ratio: 1.540525e-02	ci left: 1.926693e-02	ci right 1.956634e-02	k: 63491	n:3270000
KS ci ratio: 2.263212e+00	ci left: 7.407012e-08	ci right 2.209383e-06	k: 2	n:3270000
ACOT4   3270000 perm   4258 sec   (768 perm/sec)   p_kst 6.116208e-07   p_cons 1.941621e-02   p_joint 7.339450e-06

Joint ci ratio: 7.839969e-01	ci left: 4.688192e-06	ci right 1.088721e-05	k: 24	n:3280000
Cons ci ratio: 1.538374e-02	ci left: 1.926224e-02	ci right 1.956117e-02	k: 63669	n:3280000
KS ci ratio: 2.263212e+00	ci left: 7.384430e-08	ci right 2.202647e-06	k: 2	n:3280000
ACOT4   3280000 perm   4282 sec   (766 perm/sec)   p_kst 6.097561e-07   p_cons 1.941128e-02   p_joint 7.317073e-06

Joint ci ratio: 7.839969e-01	ci left: 4.673942e-06	ci right 1.085411e-05	k: 24	n:3290000
Cons ci ratio: 1.535913e-02	ci left: 1.926547e-02	ci right 1.956395e-02	k: 63873	n:3290000
KS ci ratio: 2.263212e+00	ci left: 7.361985e-08	ci right 2.195952e-06	k: 2	n:3290000
ACOT4   3290000 perm   4307 sec   (764 perm/sec)   p_kst 6.079027e-07   p_cons 1.941429e-02   p_joint 7.294833e-06

Joint ci ratio: 7.839969e-01	ci left: 4.659779e-06	ci right 1.082122e-05	k: 24	n:3300000
Cons ci ratio: 1.533610e-02	ci left: 1.926504e-02	ci right 1.956307e-02	k: 64065	n:3300000
KS ci ratio: 2.263212e+00	ci left: 7.339676e-08	ci right 2.189298e-06	k: 2	n:3300000
ACOT4   3300000 perm   4332 sec   (762 perm/sec)   p_kst 6.060606e-07   p_cons 1.941364e-02   p_joint 7.272727e-06

Joint ci ratio: 7.839969e-01	ci left: 4.645701e-06	ci right 1.078853e-05	k: 24	n:3310000
Cons ci ratio: 1.531330e-02	ci left: 1.926432e-02	ci right 1.956190e-02	k: 64256	n:3310000
KS ci ratio: 2.263212e+00	ci left: 7.317502e-08	ci right 2.182683e-06	k: 2	n:3310000
ACOT4   3310000 perm   4356 sec   (760 perm/sec)   p_kst 6.042296e-07   p_cons 1.941269e-02   p_joint 7.250755e-06

Joint ci ratio: 7.839969e-01	ci left: 4.631708e-06	ci right 1.075603e-05	k: 24	n:3320000
Cons ci ratio: 1.529230e-02	ci left: 1.925941e-02	ci right 1.955649e-02	k: 64433	n:3320000
KS ci ratio: 2.263212e+00	ci left: 7.295461e-08	ci right 2.176109e-06	k: 2	n:3320000
ACOT4   3320000 perm   4381 sec   (758 perm/sec)   p_kst 6.024096e-07   p_cons 1.940753e-02   p_joint 7.228916e-06

Joint ci ratio: 7.839969e-01	ci left: 4.617799e-06	ci right 1.072373e-05	k: 24	n:3330000
Cons ci ratio: 1.527089e-02	ci left: 1.925572e-02	ci right 1.955233e-02	k: 64614	n:3330000
KS ci ratio: 2.263212e+00	ci left: 7.273553e-08	ci right 2.169574e-06	k: 2	n:3330000
ACOT4   3330000 perm   4406 sec   (756 perm/sec)   p_kst 6.006006e-07   p_cons 1.940360e-02   p_joint 7.207207e-06

Joint ci ratio: 7.687721e-01	ci left: 4.843922e-06	ci right 1.104936e-05	k: 25	n:3340000
Cons ci ratio: 1.524922e-02	ci left: 1.925295e-02	ci right 1.954909e-02	k: 64798	n:3340000
KS ci ratio: 2.263212e+00	ci left: 7.251776e-08	ci right 2.163078e-06	k: 2	n:3340000
ACOT4   3340000 perm   4431 sec   (754 perm/sec)   p_kst 5.988024e-07   p_cons 1.940060e-02   p_joint 7.485030e-06

Joint ci ratio: 7.687722e-01	ci left: 4.829463e-06	ci right 1.101638e-05	k: 25	n:3350000
Cons ci ratio: 1.522537e-02	ci left: 1.925584e-02	ci right 1.955156e-02	k: 65001	n:3350000
KS ci ratio: 2.263212e+00	ci left: 7.230129e-08	ci right 2.156622e-06	k: 2	n:3350000
ACOT4   3350000 perm   4455 sec   (752 perm/sec)   p_kst 5.970149e-07   p_cons 1.940328e-02   p_joint 7.462687e-06

Joint ci ratio: 7.687722e-01	ci left: 4.815089e-06	ci right 1.098359e-05	k: 25	n:3360000
Cons ci ratio: 1.520234e-02	ci left: 1.925694e-02	ci right 1.955222e-02	k: 65198	n:3360000
KS ci ratio: 2.263212e+00	ci left: 7.208610e-08	ci right 2.150203e-06	k: 2	n:3360000
ACOT4   3360000 perm   4480 sec   (750 perm/sec)   p_kst 5.952381e-07   p_cons 1.940417e-02   p_joint 7.440476e-06

Joint ci ratio: 7.687722e-01	ci left: 4.800801e-06	ci right 1.095100e-05	k: 25	n:3370000
Cons ci ratio: 1.518297e-02	ci left: 1.924916e-02	ci right 1.954395e-02	k: 65365	n:3370000
KS ci ratio: 2.263212e+00	ci left: 7.187220e-08	ci right 2.143823e-06	k: 2	n:3370000
ACOT4   3370000 perm   4506 sec   (748 perm/sec)   p_kst 5.934718e-07   p_cons 1.939614e-02   p_joint 7.418398e-06

Joint ci ratio: 7.687722e-01	ci left: 4.786598e-06	ci right 1.091860e-05	k: 25	n:3380000
Cons ci ratio: 1.516002e-02	ci left: 1.925057e-02	ci right 1.954493e-02	k: 65563	n:3380000
KS ci ratio: 2.263212e+00	ci left: 7.165956e-08	ci right 2.137480e-06	k: 2	n:3380000
ACOT4   3380000 perm   4531 sec   (746 perm/sec)   p_kst 5.917160e-07   p_cons 1.939734e-02   p_joint 7.396450e-06

Joint ci ratio: 7.687722e-01	ci left: 4.772478e-06	ci right 1.088639e-05	k: 25	n:3390000
Cons ci ratio: 1.513260e-02	ci left: 1.926343e-02	ci right 1.955745e-02	k: 65800	n:3390000
KS ci ratio: 2.263212e+00	ci left: 7.144817e-08	ci right 2.131175e-06	k: 2	n:3390000
ACOT4   3390000 perm   4556 sec   (744 perm/sec)   p_kst 5.899705e-07   p_cons 1.941003e-02   p_joint 7.374631e-06

Joint ci ratio: 7.687722e-01	ci left: 4.758441e-06	ci right 1.085437e-05	k: 25	n:3400000
Cons ci ratio: 1.511186e-02	ci left: 1.925981e-02	ci right 1.955336e-02	k: 65981	n:3400000
KS ci ratio: 2.263212e+00	ci left: 7.123803e-08	ci right 2.124907e-06	k: 2	n:3400000
ACOT4   3400000 perm   4581 sec   (742 perm/sec)   p_kst 5.882353e-07   p_cons 1.940618e-02   p_joint 7.352941e-06

Joint ci ratio: 7.687722e-01	ci left: 4.744487e-06	ci right 1.082254e-05	k: 25	n:3410000
Cons ci ratio: 1.508980e-02	ci left: 1.925971e-02	ci right 1.955283e-02	k: 66174	n:3410000
KS ci ratio: 2.263212e+00	ci left: 7.102912e-08	ci right 2.118675e-06	k: 2	n:3410000
ACOT4   3410000 perm   4606 sec   (740 perm/sec)   p_kst 5.865103e-07   p_cons 1.940587e-02   p_joint 7.331378e-06

Joint ci ratio: 8.001637e-01	ci left: 4.263170e-06	ci right 1.009100e-05	k: 23	n:3420000
Cons ci ratio: 1.506843e-02	ci left: 1.925816e-02	ci right 1.955084e-02	k: 66362	n:3420000
KS ci ratio: 2.263212e+00	ci left: 7.082143e-08	ci right 2.112480e-06	k: 2	n:3420000
ACOT4   3420000 perm   4632 sec   (738 perm/sec)   p_kst 5.847953e-07   p_cons 1.940409e-02   p_joint 6.725146e-06

Joint ci ratio: 8.001637e-01	ci left: 4.250741e-06	ci right 1.006158e-05	k: 23	n:3430000
Cons ci ratio: 1.504657e-02	ci left: 1.925807e-02	ci right 1.955032e-02	k: 66555	n:3430000
KS ci ratio: 2.263212e+00	ci left: 7.061496e-08	ci right 2.106321e-06	k: 2	n:3430000
ACOT4   3430000 perm   4658 sec   (736 perm/sec)   p_kst 5.830904e-07   p_cons 1.940379e-02   p_joint 6.705539e-06

Joint ci ratio: 8.001637e-01	ci left: 4.238385e-06	ci right 1.003234e-05	k: 23	n:3440000
Cons ci ratio: 1.502538e-02	ci left: 1.925653e-02	ci right 1.954835e-02	k: 66743	n:3440000
KS ci ratio: 2.263212e+00	ci left: 7.040968e-08	ci right 2.100198e-06	k: 2	n:3440000
ACOT4   3440000 perm   4684 sec   (734 perm/sec)   p_kst 5.813953e-07   p_cons 1.940203e-02   p_joint 6.686047e-06

Joint ci ratio: 8.001638e-01	ci left: 4.226099e-06	ci right 1.000326e-05	k: 23	n:3450000
Cons ci ratio: 1.500221e-02	ci left: 1.926020e-02	ci right 1.955162e-02	k: 66949	n:3450000
KS ci ratio: 2.263212e+00	ci left: 7.020560e-08	ci right 2.094111e-06	k: 2	n:3450000
ACOT4   3450000 perm   4709 sec   (733 perm/sec)   p_kst 5.797101e-07   p_cons 1.940551e-02   p_joint 6.666667e-06

Joint ci ratio: 8.993071e-01	ci left: 3.083223e-06	ci right 8.221884e-06	k: 18	n:3460000
Cons ci ratio: 1.497996e-02	ci left: 1.926184e-02	ci right 1.955284e-02	k: 67148	n:3460000
KS ci ratio: 2.263212e+00	ci left: 7.000269e-08	ci right 2.088058e-06	k: 2	n:3460000
ACOT4   3460000 perm   4735 sec   (731 perm/sec)   p_kst 5.780347e-07   p_cons 1.940694e-02   p_joint 5.202312e-06

Joint ci ratio: 8.993071e-01	ci left: 3.074337e-06	ci right 8.198189e-06	k: 18	n:3470000
Cons ci ratio: 1.495644e-02	ci left: 1.926691e-02	ci right 1.955753e-02	k: 67359	n:3470000
KS ci ratio: 2.263212e+00	ci left: 6.980095e-08	ci right 2.082041e-06	k: 2	n:3470000
ACOT4   3470000 perm   4760 sec   (729 perm/sec)   p_kst 5.763689e-07   p_cons 1.941182e-02   p_joint 5.187320e-06

Joint ci ratio: 8.993071e-01	ci left: 3.065503e-06	ci right 8.174631e-06	k: 18	n:3480000
Cons ci ratio: 1.493360e-02	ci left: 1.927052e-02	ci right 1.956074e-02	k: 67565	n:3480000
KS ci ratio: 2.263212e+00	ci left: 6.960038e-08	ci right 2.076058e-06	k: 2	n:3480000
ACOT4   3480000 perm   4786 sec   (727 perm/sec)   p_kst 5.747126e-07   p_cons 1.941523e-02   p_joint 5.172414e-06

Joint ci ratio: 8.993071e-01	ci left: 3.056719e-06	ci right 8.151209e-06	k: 18	n:3490000
Cons ci ratio: 1.491131e-02	ci left: 1.927297e-02	ci right 1.956279e-02	k: 67767	n:3490000
KS ci ratio: 2.263212e+00	ci left: 6.940095e-08	ci right 2.070110e-06	k: 2	n:3490000
ACOT4   3490000 perm   4812 sec   (725 perm/sec)   p_kst 5.730659e-07   p_cons 1.941748e-02   p_joint 5.157593e-06

Joint ci ratio: 8.993071e-01	ci left: 3.047986e-06	ci right 8.127919e-06	k: 18	n:3500000
Cons ci ratio: 1.488979e-02	ci left: 1.927369e-02	ci right 1.956310e-02	k: 67963	n:3500000
KS ci ratio: 2.263212e+00	ci left: 6.920266e-08	ci right 2.064195e-06	k: 2	n:3500000
ACOT4   3500000 perm   4838 sec   (723 perm/sec)   p_kst 5.714286e-07   p_cons 1.941800e-02   p_joint 5.142857e-06

Joint ci ratio: 8.993071e-01	ci left: 3.039302e-06	ci right 8.104763e-06	k: 18	n:3510000
Cons ci ratio: 1.486769e-02	ci left: 1.927612e-02	ci right 1.956513e-02	k: 68165	n:3510000
KS ci ratio: 2.263212e+00	ci left: 6.900550e-08	ci right 2.058314e-06	k: 2	n:3510000
ACOT4   3510000 perm   4863 sec   (722 perm/sec)   p_kst 5.698006e-07   p_cons 1.942023e-02   p_joint 5.128205e-06

Joint ci ratio: 8.993071e-01	ci left: 3.030668e-06	ci right 8.081738e-06	k: 18	n:3520000
Cons ci ratio: 1.484891e-02	ci left: 1.927032e-02	ci right 1.955888e-02	k: 68338	n:3520000
KS ci ratio: 2.263212e+00	ci left: 6.880946e-08	ci right 2.052467e-06	k: 2	n:3520000
ACOT4   3520000 perm   4889 sec   (720 perm/sec)   p_kst 5.681818e-07   p_cons 1.941420e-02   p_joint 5.113636e-06

Joint ci ratio: 8.765360e-01	ci left: 3.240581e-06	ci right 8.405328e-06	k: 19	n:3530000
Cons ci ratio: 1.482997e-02	ci left: 1.926512e-02	ci right 1.955323e-02	k: 68513	n:3530000
KS ci ratio: 2.263212e+00	ci left: 6.861453e-08	ci right 2.046652e-06	k: 2	n:3530000
ACOT4   3530000 perm   4915 sec   (718 perm/sec)   p_kst 5.665722e-07   p_cons 1.940878e-02   p_joint 5.382436e-06

Joint ci ratio: 8.765360e-01	ci left: 3.231427e-06	ci right 8.381584e-06	k: 19	n:3540000
Cons ci ratio: 1.480891e-02	ci left: 1.926558e-02	ci right 1.955329e-02	k: 68708	n:3540000
KS ci ratio: 2.263212e+00	ci left: 6.842071e-08	ci right 2.040871e-06	k: 2	n:3540000
ACOT4   3540000 perm   4942 sec   (716 perm/sec)   p_kst 5.649718e-07   p_cons 1.940904e-02   p_joint 5.367232e-06

Joint ci ratio: 8.765361e-01	ci left: 3.222324e-06	ci right 8.357974e-06	k: 19	n:3550000
Cons ci ratio: 1.478706e-02	ci left: 1.926828e-02	ci right 1.955560e-02	k: 68911	n:3550000
KS ci ratio: 2.263212e+00	ci left: 6.822797e-08	ci right 2.035122e-06	k: 2	n:3550000
ACOT4   3550000 perm   4968 sec   (715 perm/sec)   p_kst 5.633803e-07   p_cons 1.941155e-02   p_joint 5.352113e-06

Joint ci ratio: 8.765361e-01	ci left: 3.213273e-06	ci right 8.334497e-06	k: 19	n:3560000
Cons ci ratio: 1.476335e-02	ci left: 1.927601e-02	ci right 1.956298e-02	k: 69132	n:3560000
KS ci ratio: 2.263212e+00	ci left: 6.803632e-08	ci right 2.029405e-06	k: 2	n:3560000
ACOT4   3560000 perm   4995 sec   (713 perm/sec)   p_kst 5.617978e-07   p_cons 1.941910e-02   p_joint 5.337079e-06

Joint ci ratio: 8.765361e-01	ci left: 3.204272e-06	ci right 8.311151e-06	k: 19	n:3570000
Cons ci ratio: 1.474279e-02	ci left: 1.927588e-02	ci right 1.956244e-02	k: 69325	n:3570000
KS ci ratio: 2.263212e+00	ci left: 6.784574e-08	ci right 2.023721e-06	k: 2	n:3570000
ACOT4   3570000 perm   5021 sec   (711 perm/sec)   p_kst 5.602241e-07   p_cons 1.941877e-02   p_joint 5.322129e-06

Joint ci ratio: 8.765361e-01	ci left: 3.195322e-06	ci right 8.287936e-06	k: 19	n:3580000
Cons ci ratio: 1.472242e-02	ci left: 1.927547e-02	ci right 1.956162e-02	k: 69517	n:3580000
KS ci ratio: 2.263212e+00	ci left: 6.765623e-08	ci right 2.018068e-06	k: 2	n:3580000
ACOT4   3580000 perm   5048 sec   (709 perm/sec)   p_kst 5.586592e-07   p_cons 1.941816e-02   p_joint 5.307263e-06

Joint ci ratio: 8.765361e-01	ci left: 3.186421e-06	ci right 8.264849e-06	k: 19	n:3590000
Cons ci ratio: 1.470149e-02	ci left: 1.927672e-02	ci right 1.956249e-02	k: 69715	n:3590000
KS ci ratio: 2.263212e+00	ci left: 6.746777e-08	ci right 2.012446e-06	k: 2	n:3590000
ACOT4   3590000 perm   5074 sec   (708 perm/sec)   p_kst 5.571031e-07   p_cons 1.941922e-02   p_joint 5.292479e-06

Joint ci ratio: 8.765361e-01	ci left: 3.177570e-06	ci right 8.241892e-06	k: 19	n:3600000
Cons ci ratio: 1.468151e-02	ci left: 1.927576e-02	ci right 1.956112e-02	k: 69905	n:3600000
KS ci ratio: 2.263212e+00	ci left: 6.728036e-08	ci right 2.006856e-06	k: 2	n:3600000
ACOT4   3600000 perm   5101 sec   (706 perm/sec)   p_kst 5.555556e-07   p_cons 1.941806e-02   p_joint 5.277778e-06

Joint ci ratio: 8.765361e-01	ci left: 3.168768e-06	ci right 8.219061e-06	k: 19	n:3610000
Cons ci ratio: 1.466150e-02	ci left: 1.927508e-02	ci right 1.956004e-02	k: 70096	n:3610000
KS ci ratio: 2.263212e+00	ci left: 6.709399e-08	ci right 2.001297e-06	k: 2	n:3610000
ACOT4   3610000 perm   5127 sec   (704 perm/sec)   p_kst 5.540166e-07   p_cons 1.941717e-02   p_joint 5.263158e-06

Joint ci ratio: 8.765361e-01	ci left: 3.160014e-06	ci right 8.196356e-06	k: 19	n:3620000
Cons ci ratio: 1.464157e-02	ci left: 1.927440e-02	ci right 1.955896e-02	k: 70287	n:3620000
KS ci ratio: 2.263212e+00	ci left: 6.690865e-08	ci right 1.995769e-06	k: 2	n:3620000
ACOT4   3620000 perm   5154 sec   (702 perm/sec)   p_kst 5.524862e-07   p_cons 1.941630e-02   p_joint 5.248619e-06

Joint ci ratio: 8.765361e-01	ci left: 3.151309e-06	ci right 8.173777e-06	k: 19	n:3630000
Cons ci ratio: 1.462225e-02	ci left: 1.927236e-02	ci right 1.955651e-02	k: 70473	n:3630000
KS ci ratio: 2.263212e+00	ci left: 6.672433e-08	ci right 1.990271e-06	k: 2	n:3630000
ACOT4   3630000 perm   5181 sec   (701 perm/sec)   p_kst 5.509642e-07   p_cons 1.941405e-02   p_joint 5.234160e-06

Joint ci ratio: 8.765361e-01	ci left: 3.142652e-06	ci right 8.151321e-06	k: 19	n:3640000
Cons ci ratio: 1.460228e-02	ci left: 1.927224e-02	ci right 1.955600e-02	k: 70666	n:3640000
KS ci ratio: 2.263212e+00	ci left: 6.654102e-08	ci right 1.984803e-06	k: 2	n:3640000
ACOT4   3640000 perm   5208 sec   (699 perm/sec)   p_kst 5.494505e-07   p_cons 1.941374e-02   p_joint 5.219780e-06

Joint ci ratio: 8.554116e-01	ci left: 3.346995e-06	ci right 8.462557e-06	k: 20	n:3650000
Cons ci ratio: 1.458227e-02	ci left: 1.927240e-02	ci right 1.955576e-02	k: 70860	n:3650000
KS ci ratio: 2.263212e+00	ci left: 6.635871e-08	ci right 1.979365e-06	k: 2	n:3650000
ACOT4   3650000 perm   5235 sec   (697 perm/sec)   p_kst 5.479452e-07   p_cons 1.941370e-02   p_joint 5.479452e-06

Joint ci ratio: 8.554116e-01	ci left: 3.337850e-06	ci right 8.439435e-06	k: 20	n:3660000
Cons ci ratio: 1.456507e-02	ci left: 1.926547e-02	ci right 1.954840e-02	k: 71028	n:3660000
KS ci ratio: 2.263212e+00	ci left: 6.617741e-08	ci right 1.973957e-06	k: 2	n:3660000
ACOT4   3660000 perm   5262 sec   (696 perm/sec)   p_kst 5.464481e-07   p_cons 1.940656e-02   p_joint 5.464481e-06

Joint ci ratio: 8.554116e-01	ci left: 3.328755e-06	ci right 8.416439e-06	k: 20	n:3670000
Cons ci ratio: 1.454532e-02	ci left: 1.926538e-02	ci right 1.954792e-02	k: 71221	n:3670000
KS ci ratio: 2.263212e+00	ci left: 6.599709e-08	ci right 1.968578e-06	k: 2	n:3670000
ACOT4   3670000 perm   5289 sec   (694 perm/sec)   p_kst 5.449591e-07   p_cons 1.940627e-02   p_joint 5.449591e-06

Joint ci ratio: 8.554116e-01	ci left: 3.319709e-06	ci right 8.393569e-06	k: 20	n:3680000
Cons ci ratio: 1.452701e-02	ci left: 1.926176e-02	ci right 1.954389e-02	k: 71401	n:3680000
KS ci ratio: 2.263212e+00	ci left: 6.581775e-08	ci right 1.963229e-06	k: 2	n:3680000
ACOT4   3680000 perm   5316 sec   (692 perm/sec)   p_kst 5.434783e-07   p_cons 1.940245e-02   p_joint 5.434783e-06

Joint ci ratio: 8.554116e-01	ci left: 3.310713e-06	ci right 8.370822e-06	k: 20	n:3690000
Cons ci ratio: 1.450669e-02	ci left: 1.926356e-02	ci right 1.954532e-02	k: 71601	n:3690000
KS ci ratio: 2.263212e+00	ci left: 6.563938e-08	ci right 1.957909e-06	k: 2	n:3690000
ACOT4   3690000 perm   5343 sec   (691 perm/sec)   p_kst 5.420054e-07   p_cons 1.940407e-02   p_joint 5.420054e-06

Joint ci ratio: 8.357442e-01	ci left: 3.513336e-06	ci right 8.675860e-06	k: 21	n:3700000
Cons ci ratio: 1.448770e-02	ci left: 1.926213e-02	ci right 1.954349e-02	k: 71789	n:3700000
KS ci ratio: 2.263212e+00	ci left: 6.546197e-08	ci right 1.952617e-06	k: 2	n:3700000
ACOT4   3700000 perm   5370 sec   (689 perm/sec)   p_kst 5.405405e-07   p_cons 1.940243e-02   p_joint 5.675676e-06

Joint ci ratio: 8.357442e-01	ci left: 3.503866e-06	ci right 8.652475e-06	k: 21	n:3710000
Cons ci ratio: 1.446806e-02	ci left: 1.926258e-02	ci right 1.954356e-02	k: 71984	n:3710000
KS ci ratio: 2.263212e+00	ci left: 6.528553e-08	ci right 1.947354e-06	k: 2	n:3710000
ACOT4   3710000 perm   5398 sec   (687 perm/sec)   p_kst 5.390836e-07   p_cons 1.940270e-02   p_joint 5.660377e-06

Joint ci ratio: 8.357442e-01	ci left: 3.494447e-06	ci right 8.629216e-06	k: 21	n:3720000
Cons ci ratio: 1.444626e-02	ci left: 1.926892e-02	ci right 1.954957e-02	k: 72201	n:3720000
KS ci ratio: 2.263212e+00	ci left: 6.511003e-08	ci right 1.942119e-06	k: 2	n:3720000
ACOT4   3720000 perm   5425 sec   (686 perm/sec)   p_kst 5.376344e-07   p_cons 1.940887e-02   p_joint 5.645161e-06

Joint ci ratio: 8.357442e-01	ci left: 3.485079e-06	ci right 8.606081e-06	k: 21	n:3730000
Cons ci ratio: 1.442882e-02	ci left: 1.926401e-02	ci right 1.954425e-02	k: 72376	n:3730000
KS ci ratio: 2.263212e+00	ci left: 6.493547e-08	ci right 1.936912e-06	k: 2	n:3730000
ACOT4   3730000 perm   5453 sec   (684 perm/sec)   p_kst 5.361930e-07   p_cons 1.940375e-02   p_joint 5.630027e-06

Joint ci ratio: 8.357442e-01	ci left: 3.475760e-06	ci right 8.583070e-06	k: 21	n:3740000
Cons ci ratio: 1.440972e-02	ci left: 1.926365e-02	ci right 1.954351e-02	k: 72568	n:3740000
KS ci ratio: 2.263212e+00	ci left: 6.476185e-08	ci right 1.931733e-06	k: 2	n:3740000
ACOT4   3740000 perm   5480 sec   (682 perm/sec)   p_kst 5.347594e-07   p_cons 1.940321e-02   p_joint 5.614973e-06

Joint ci ratio: 8.357442e-01	ci left: 3.466491e-06	ci right 8.560182e-06	k: 21	n:3750000
Cons ci ratio: 1.439000e-02	ci left: 1.926516e-02	ci right 1.954465e-02	k: 72767	n:3750000
KS ci ratio: 2.263212e+00	ci left: 6.458915e-08	ci right 1.926582e-06	k: 2	n:3750000
ACOT4   3750000 perm   5508 sec   (681 perm/sec)   p_kst 5.333333e-07   p_cons 1.940453e-02   p_joint 5.600000e-06

Joint ci ratio: 8.357443e-01	ci left: 3.457272e-06	ci right 8.537416e-06	k: 21	n:3760000
Cons ci ratio: 1.436744e-02	ci left: 1.927434e-02	ci right 1.955353e-02	k: 72995	n:3760000
KS ci ratio: 2.263212e+00	ci left: 6.441737e-08	ci right 1.921458e-06	k: 2	n:3760000
ACOT4   3760000 perm   5536 sec   (679 perm/sec)   p_kst 5.319149e-07   p_cons 1.941356e-02   p_joint 5.585106e-06

Joint ci ratio: 8.357443e-01	ci left: 3.448102e-06	ci right 8.514770e-06	k: 21	n:3770000
Cons ci ratio: 1.434928e-02	ci left: 1.927211e-02	ci right 1.955091e-02	k: 73180	n:3770000
KS ci ratio: 2.263212e+00	ci left: 6.424650e-08	ci right 1.916361e-06	k: 2	n:3770000
ACOT4   3770000 perm   5564 sec   (678 perm/sec)   p_kst 5.305040e-07   p_cons 1.941114e-02   p_joint 5.570292e-06

Joint ci ratio: 8.357443e-01	ci left: 3.438980e-06	ci right 8.492244e-06	k: 21	n:3780000
Cons ci ratio: 1.433279e-02	ci left: 1.926567e-02	ci right 1.954406e-02	k: 73349	n:3780000
KS ci ratio: 2.263212e+00	ci left: 6.407654e-08	ci right 1.911292e-06	k: 2	n:3780000
ACOT4   3780000 perm   5591 sec   (676 perm/sec)   p_kst 5.291005e-07   p_cons 1.940450e-02   p_joint 5.555556e-06

Joint ci ratio: 8.357443e-01	ci left: 3.429906e-06	ci right 8.469837e-06	k: 21	n:3790000
Cons ci ratio: 1.431775e-02	ci left: 1.925559e-02	ci right 1.953353e-02	k: 73504	n:3790000
KS ci ratio: 2.263212e+00	ci left: 6.390747e-08	ci right 1.906249e-06	k: 2	n:3790000
ACOT4   3790000 perm   5619 sec   (675 perm/sec)   p_kst 5.277045e-07   p_cons 1.939420e-02   p_joint 5.540897e-06

Joint ci ratio: 8.357443e-01	ci left: 3.420880e-06	ci right 8.447548e-06	k: 21	n:3800000
Cons ci ratio: 1.430087e-02	ci left: 1.925054e-02	ci right 1.952808e-02	k: 73678	n:3800000
KS ci ratio: 2.263212e+00	ci left: 6.373929e-08	ci right 1.901232e-06	k: 2	n:3800000
ACOT4   3800000 perm   5647 sec   (673 perm/sec)   p_kst 5.263158e-07   p_cons 1.938895e-02   p_joint 5.526316e-06

Joint ci ratio: 8.357443e-01	ci left: 3.411901e-06	ci right 8.425376e-06	k: 21	n:3810000
Cons ci ratio: 1.427952e-02	ci left: 1.925755e-02	ci right 1.953478e-02	k: 73898	n:3810000
KS ci ratio: 2.263212e+00	ci left: 6.357200e-08	ci right 1.896242e-06	k: 2	n:3810000
ACOT4   3810000 perm   5676 sec   (671 perm/sec)   p_kst 5.249344e-07   p_cons 1.939580e-02   p_joint 5.511811e-06

Joint ci ratio: 8.357443e-01	ci left: 3.402969e-06	ci right 8.403320e-06	k: 21	n:3820000
Cons ci ratio: 1.426228e-02	ci left: 1.925383e-02	ci right 1.953067e-02	k: 74077	n:3820000
KS ci ratio: 2.263212e+00	ci left: 6.340558e-08	ci right 1.891278e-06	k: 2	n:3820000
ACOT4   3820000 perm   5704 sec   (670 perm/sec)   p_kst 5.235602e-07   p_cons 1.939188e-02   p_joint 5.497382e-06

Joint ci ratio: 8.357443e-01	ci left: 3.394084e-06	ci right 8.381380e-06	k: 21	n:3830000
Cons ci ratio: 1.424521e-02	ci left: 1.924987e-02	ci right 1.952631e-02	k: 74255	n:3830000
KS ci ratio: 2.263212e+00	ci left: 6.324003e-08	ci right 1.886340e-06	k: 2	n:3830000
ACOT4   3830000 perm   5732 sec   (668 perm/sec)   p_kst 5.221932e-07   p_cons 1.938773e-02   p_joint 5.483029e-06

Joint ci ratio: 8.357443e-01	ci left: 3.385246e-06	ci right 8.359553e-06	k: 21	n:3840000
Cons ci ratio: 1.422761e-02	ci left: 1.924749e-02	ci right 1.952355e-02	k: 74439	n:3840000
KS ci ratio: 2.263212e+00	ci left: 6.307534e-08	ci right 1.881428e-06	k: 2	n:3840000
ACOT4   3840000 perm   5761 sec   (667 perm/sec)   p_kst 5.208333e-07   p_cons 1.938516e-02   p_joint 5.468750e-06

Joint ci ratio: 8.357443e-01	ci left: 3.376453e-06	ci right 8.337840e-06	k: 21	n:3850000
Cons ci ratio: 1.420814e-02	ci left: 1.925029e-02	ci right 1.952601e-02	k: 74643	n:3850000
KS ci ratio: 2.263212e+00	ci left: 6.291151e-08	ci right 1.876541e-06	k: 2	n:3850000
ACOT4   3850000 perm   5789 sec   (665 perm/sec)   p_kst 5.194805e-07   p_cons 1.938779e-02   p_joint 5.454545e-06

Joint ci ratio: 9.799978e-01	ci left: 2.174972e-06	ci right 6.409375e-06	k: 15	n:3860000
Cons ci ratio: 1.418874e-02	ci left: 1.925308e-02	ci right 1.952847e-02	k: 74847	n:3860000
KS ci ratio: 2.263212e+00	ci left: 6.274852e-08	ci right 1.871679e-06	k: 2	n:3860000
ACOT4   3860000 perm   5817 sec   (664 perm/sec)   p_kst 5.181347e-07   p_cons 1.939041e-02   p_joint 3.886010e-06

Joint ci ratio: 9.799978e-01	ci left: 2.169352e-06	ci right 6.392813e-06	k: 15	n:3870000
Cons ci ratio: 1.417116e-02	ci left: 1.925123e-02	ci right 1.952624e-02	k: 75033	n:3870000
KS ci ratio: 2.263212e+00	ci left: 6.258638e-08	ci right 1.866843e-06	k: 2	n:3870000
ACOT4   3870000 perm   5845 sec   (662 perm/sec)   p_kst 5.167959e-07   p_cons 1.938837e-02   p_joint 3.875969e-06

Joint ci ratio: 9.799979e-01	ci left: 2.163761e-06	ci right 6.376337e-06	k: 15	n:3880000
Cons ci ratio: 1.415355e-02	ci left: 1.924963e-02	ci right 1.952428e-02	k: 75220	n:3880000
KS ci ratio: 2.263212e+00	ci left: 6.242508e-08	ci right 1.862032e-06	k: 2	n:3880000
ACOT4   3880000 perm   5874 sec   (661 perm/sec)   p_kst 5.154639e-07   p_cons 1.938660e-02   p_joint 3.865979e-06

Joint ci ratio: 9.799979e-01	ci left: 2.158199e-06	ci right 6.359945e-06	k: 15	n:3890000
Cons ci ratio: 1.413524e-02	ci left: 1.925010e-02	ci right 1.952439e-02	k: 75415	n:3890000
KS ci ratio: 2.263212e+00	ci left: 6.226460e-08	ci right 1.857245e-06	k: 2	n:3890000
ACOT4   3890000 perm   5902 sec   (659 perm/sec)   p_kst 5.141388e-07   p_cons 1.938689e-02   p_joint 3.856041e-06

Joint ci ratio: 9.799979e-01	ci left: 2.152665e-06	ci right 6.343638e-06	k: 15	n:3900000
Cons ci ratio: 1.411757e-02	ci left: 1.924903e-02	ci right 1.952296e-02	k: 75604	n:3900000
KS ci ratio: 2.263212e+00	ci left: 6.210495e-08	ci right 1.852483e-06	k: 2	n:3900000
ACOT4   3900000 perm   5931 sec   (658 perm/sec)   p_kst 5.128205e-07   p_cons 1.938564e-02   p_joint 3.846154e-06

Joint ci ratio: 9.799979e-01	ci left: 2.147159e-06	ci right 6.327414e-06	k: 15	n:3910000
Cons ci ratio: 1.409996e-02	ci left: 1.924797e-02	ci right 1.952154e-02	k: 75793	n:3910000
KS ci ratio: 2.263212e+00	ci left: 6.194611e-08	ci right 1.847745e-06	k: 2	n:3910000
ACOT4   3910000 perm   5960 sec   (656 perm/sec)   p_kst 5.115090e-07   p_cons 1.938440e-02   p_joint 3.836317e-06

Joint ci ratio: 9.799979e-01	ci left: 2.141682e-06	ci right 6.311272e-06	k: 15	n:3920000
Cons ci ratio: 1.408242e-02	ci left: 1.924691e-02	ci right 1.952013e-02	k: 75982	n:3920000
KS ci ratio: 2.263212e+00	ci left: 6.178809e-08	ci right 1.843031e-06	k: 2	n:3920000
ACOT4   3920000 perm   5988 sec   (655 perm/sec)   p_kst 5.102041e-07   p_cons 1.938316e-02   p_joint 3.826531e-06

Joint ci ratio: 9.799979e-01	ci left: 2.136232e-06	ci right 6.295213e-06	k: 15	n:3930000
Cons ci ratio: 1.406476e-02	ci left: 1.924637e-02	ci right 1.951923e-02	k: 76173	n:3930000
KS ci ratio: 2.263212e+00	ci left: 6.163087e-08	ci right 1.838342e-06	k: 2	n:3930000
ACOT4   3930000 perm   6017 sec   (653 perm/sec)   p_kst 5.089059e-07   p_cons 1.938244e-02   p_joint 3.816794e-06

Joint ci ratio: 9.799979e-01	ci left: 2.130810e-06	ci right 6.279236e-06	k: 15	n:3940000
Cons ci ratio: 1.404820e-02	ci left: 1.924304e-02	ci right 1.951553e-02	k: 76353	n:3940000
KS ci ratio: 2.263212e+00	ci left: 6.147444e-08	ci right 1.833676e-06	k: 2	n:3940000
ACOT4   3940000 perm   6047 sec   (652 perm/sec)   p_kst 5.076142e-07   p_cons 1.937893e-02   p_joint 3.807107e-06

Joint ci ratio: 9.799979e-01	ci left: 2.125416e-06	ci right 6.263339e-06	k: 15	n:3950000
Cons ci ratio: 1.403076e-02	ci left: 1.924226e-02	ci right 1.951440e-02	k: 76543	n:3950000
KS ci ratio: 2.263212e+00	ci left: 6.131881e-08	ci right 1.829034e-06	k: 2	n:3950000
ACOT4   3950000 perm   6076 sec   (650 perm/sec)   p_kst 5.063291e-07   p_cons 1.937797e-02   p_joint 3.797468e-06

Joint ci ratio: 9.799979e-01	ci left: 2.120049e-06	ci right 6.247522e-06	k: 15	n:3960000
Cons ci ratio: 1.401311e-02	ci left: 1.924223e-02	ci right 1.951403e-02	k: 76736	n:3960000
KS ci ratio: 2.263212e+00	ci left: 6.116397e-08	ci right 1.824415e-06	k: 2	n:3960000
ACOT4   3960000 perm   6105 sec   (649 perm/sec)   p_kst 5.050505e-07   p_cons 1.937778e-02   p_joint 3.787879e-06

Joint ci ratio: 9.799979e-01	ci left: 2.114708e-06	ci right 6.231786e-06	k: 15	n:3970000
Cons ci ratio: 1.399496e-02	ci left: 1.924371e-02	ci right 1.951517e-02	k: 76935	n:3970000
KS ci ratio: 2.263212e+00	ci left: 6.100990e-08	ci right 1.819819e-06	k: 2	n:3970000
ACOT4   3970000 perm   6134 sec   (647 perm/sec)   p_kst 5.037783e-07   p_cons 1.937909e-02   p_joint 3.778338e-06

Joint ci ratio: 9.799979e-01	ci left: 2.109395e-06	ci right 6.216128e-06	k: 15	n:3980000
Cons ci ratio: 1.397966e-02	ci left: 1.923768e-02	ci right 1.950875e-02	k: 77104	n:3980000
KS ci ratio: 2.263212e+00	ci left: 6.085661e-08	ci right 1.815247e-06	k: 2	n:3980000
ACOT4   3980000 perm   6163 sec   (646 perm/sec)   p_kst 5.025126e-07   p_cons 1.937286e-02   p_joint 3.768844e-06

Joint ci ratio: 9.799979e-01	ci left: 2.104108e-06	ci right 6.200549e-06	k: 15	n:3990000
Cons ci ratio: 1.395787e-02	ci left: 1.924940e-02	ci right 1.952022e-02	k: 77344	n:3990000
KS ci ratio: 2.263212e+00	ci left: 6.070409e-08	ci right 1.810697e-06	k: 2	n:3990000
ACOT4   3990000 perm   6192 sec   (644 perm/sec)   p_kst 5.012531e-07   p_cons 1.938446e-02   p_joint 3.759398e-06

Joint ci ratio: 9.799979e-01	ci left: 2.098848e-06	ci right 6.185047e-06	k: 15	n:4000000
Cons ci ratio: 1.394141e-02	ci left: 1.924687e-02	ci right 1.951733e-02	k: 77527	n:4000000
KS ci ratio: 2.263212e+00	ci left: 6.055233e-08	ci right 1.806171e-06	k: 2	n:4000000
ACOT4   4000000 perm   6222 sec   (643 perm/sec)   p_kst 5.000000e-07   p_cons 1.938175e-02   p_joint 3.750000e-06

Joint ci ratio: 9.507375e-01	ci left: 2.280646e-06	ci right 6.479542e-06	k: 16	n:4010000
Cons ci ratio: 1.392445e-02	ci left: 1.924584e-02	ci right 1.951595e-02	k: 77716	n:4010000
KS ci ratio: 2.263212e+00	ci left: 6.040132e-08	ci right 1.801667e-06	k: 2	n:4010000
ACOT4   4010000 perm   6251 sec   (641 perm/sec)   p_kst 4.987531e-07   p_cons 1.938055e-02   p_joint 3.990025e-06

Joint ci ratio: 9.507375e-01	ci left: 2.274972e-06	ci right 6.463424e-06	k: 16	n:4020000
Cons ci ratio: 1.390765e-02	ci left: 1.924457e-02	ci right 1.951433e-02	k: 77904	n:4020000
KS ci ratio: 2.263212e+00	ci left: 6.025107e-08	ci right 1.797185e-06	k: 2	n:4020000
ACOT4   4020000 perm   6281 sec   (640 perm/sec)   p_kst 4.975124e-07   p_cons 1.937910e-02   p_joint 3.980100e-06

Joint ci ratio: 9.507375e-01	ci left: 2.269327e-06	ci right 6.447386e-06	k: 16	n:4030000
Cons ci ratio: 1.389109e-02	ci left: 1.924281e-02	ci right 1.951222e-02	k: 78090	n:4030000
KS ci ratio: 2.263212e+00	ci left: 6.010156e-08	ci right 1.792725e-06	k: 2	n:4030000
ACOT4   4030000 perm   6310 sec   (639 perm/sec)   p_kst 4.962779e-07   p_cons 1.937717e-02   p_joint 3.970223e-06

Joint ci ratio: 9.507375e-01	ci left: 2.263710e-06	ci right 6.431427e-06	k: 16	n:4040000
Cons ci ratio: 1.387613e-02	ci left: 1.923686e-02	ci right 1.950590e-02	k: 78259	n:4040000
KS ci ratio: 2.263212e+00	ci left: 5.995280e-08	ci right 1.788288e-06	k: 2	n:4040000
ACOT4   4040000 perm   6341 sec   (637 perm/sec)   p_kst 4.950495e-07   p_cons 1.937104e-02   p_joint 3.960396e-06

Joint ci ratio: 9.507375e-01	ci left: 2.258121e-06	ci right 6.415547e-06	k: 16	n:4050000
Cons ci ratio: 1.385986e-02	ci left: 1.923464e-02	ci right 1.950333e-02	k: 78443	n:4050000
KS ci ratio: 2.263212e+00	ci left: 5.980477e-08	ci right 1.783872e-06	k: 2	n:4050000
ACOT4   4050000 perm   6370 sec   (636 perm/sec)   p_kst 4.938272e-07   p_cons 1.936864e-02   p_joint 3.950617e-06

Joint ci ratio: 9.507375e-01	ci left: 2.252559e-06	ci right 6.399745e-06	k: 16	n:4060000
Cons ci ratio: 1.384258e-02	ci left: 1.923537e-02	ci right 1.950374e-02	k: 78639	n:4060000
KS ci ratio: 2.263212e+00	ci left: 5.965746e-08	ci right 1.779479e-06	k: 2	n:4060000
ACOT4   4060000 perm   6400 sec   (634 perm/sec)   p_kst 4.926108e-07   p_cons 1.936921e-02   p_joint 3.940887e-06

Joint ci ratio: 9.507375e-01	ci left: 2.247024e-06	ci right 6.384021e-06	k: 16	n:4070000
Cons ci ratio: 1.382598e-02	ci left: 1.923439e-02	ci right 1.950241e-02	k: 78828	n:4070000
KS ci ratio: 2.263212e+00	ci left: 5.951088e-08	ci right 1.775106e-06	k: 2	n:4070000
ACOT4   4070000 perm   6430 sec   (633 perm/sec)   p_kst 4.914005e-07   p_cons 1.936806e-02   p_joint 3.931204e-06

Joint ci ratio: 9.507376e-01	ci left: 2.241517e-06	ci right 6.368374e-06	k: 16	n:4080000
Cons ci ratio: 1.380989e-02	ci left: 1.923219e-02	ci right 1.949987e-02	k: 79012	n:4080000
KS ci ratio: 2.263212e+00	ci left: 5.936502e-08	ci right 1.770756e-06	k: 2	n:4080000
ACOT4   4080000 perm   6460 sec   (632 perm/sec)   p_kst 4.901961e-07   p_cons 1.936569e-02   p_joint 3.921569e-06

Joint ci ratio: 9.507376e-01	ci left: 2.236036e-06	ci right 6.352803e-06	k: 16	n:4090000
Cons ci ratio: 1.379377e-02	ci left: 1.923024e-02	ci right 1.949758e-02	k: 79197	n:4090000
KS ci ratio: 2.263212e+00	ci left: 5.921988e-08	ci right 1.766426e-06	k: 2	n:4090000
ACOT4   4090000 perm   6490 sec   (630 perm/sec)   p_kst 4.889976e-07   p_cons 1.936357e-02   p_joint 3.911980e-06

Joint ci ratio: 9.507376e-01	ci left: 2.230583e-06	ci right 6.337309e-06	k: 16	n:4100000
Cons ci ratio: 1.377788e-02	ci left: 1.922782e-02	ci right 1.949481e-02	k: 79380	n:4100000
KS ci ratio: 2.263212e+00	ci left: 5.907544e-08	ci right 1.762118e-06	k: 2	n:4100000
ACOT4   4100000 perm   6520 sec   (629 perm/sec)   p_kst 4.878049e-07   p_cons 1.936098e-02   p_joint 3.902439e-06

Joint ci ratio: 9.507376e-01	ci left: 2.225155e-06	ci right 6.321890e-06	k: 16	n:4110000
Cons ci ratio: 1.376301e-02	ci left: 1.922274e-02	ci right 1.948937e-02	k: 79552	n:4110000
KS ci ratio: 2.263212e+00	ci left: 5.893170e-08	ci right 1.757830e-06	k: 2	n:4110000
ACOT4   4110000 perm   6551 sec   (627 perm/sec)   p_kst 4.866180e-07   p_cons 1.935572e-02   p_joint 3.892944e-06

Joint ci ratio: 9.507376e-01	ci left: 2.219755e-06	ci right 6.306545e-06	k: 16	n:4120000
Cons ci ratio: 1.374582e-02	ci left: 1.922422e-02	ci right 1.949054e-02	k: 79751	n:4120000
KS ci ratio: 2.263212e+00	ci left: 5.878867e-08	ci right 1.753564e-06	k: 2	n:4120000
ACOT4   4120000 perm   6581 sec   (626 perm/sec)   p_kst 4.854369e-07   p_cons 1.935704e-02   p_joint 3.883495e-06

Joint ci ratio: 9.507376e-01	ci left: 2.214380e-06	ci right 6.291275e-06	k: 16	n:4130000
Cons ci ratio: 1.372992e-02	ci left: 1.922231e-02	ci right 1.948829e-02	k: 79936	n:4130000
KS ci ratio: 2.263212e+00	ci left: 5.864632e-08	ci right 1.749318e-06	k: 2	n:4130000
ACOT4   4130000 perm   6611 sec   (625 perm/sec)   p_kst 4.842615e-07   p_cons 1.935496e-02   p_joint 3.874092e-06

Joint ci ratio: 9.507376e-01	ci left: 2.209031e-06	ci right 6.276079e-06	k: 16	n:4140000
Cons ci ratio: 1.371372e-02	ci left: 1.922137e-02	ci right 1.948703e-02	k: 80125	n:4140000
KS ci ratio: 2.263212e+00	ci left: 5.850466e-08	ci right 1.745093e-06	k: 2	n:4140000
ACOT4   4140000 perm   6641 sec   (623 perm/sec)   p_kst 4.830918e-07   p_cons 1.935386e-02   p_joint 3.864734e-06

Joint ci ratio: 9.507376e-01	ci left: 2.203708e-06	ci right 6.260956e-06	k: 16	n:4150000
Cons ci ratio: 1.369654e-02	ci left: 1.922333e-02	ci right 1.948867e-02	k: 80326	n:4150000
KS ci ratio: 2.263212e+00	ci left: 5.836369e-08	ci right 1.740888e-06	k: 2	n:4150000
ACOT4   4150000 perm   6672 sec   (622 perm/sec)   p_kst 4.819277e-07   p_cons 1.935566e-02   p_joint 3.855422e-06

Joint ci ratio: 9.239508e-01	ci left: 2.380561e-06	ci right 6.542936e-06	k: 17	n:4160000
Cons ci ratio: 1.367891e-02	ci left: 1.922671e-02	ci right 1.949175e-02	k: 80533	n:4160000
KS ci ratio: 2.263212e+00	ci left: 5.822339e-08	ci right 1.736703e-06	k: 2	n:4160000
ACOT4   4160000 perm   6703 sec   (621 perm/sec)   p_kst 4.807692e-07   p_cons 1.935889e-02   p_joint 4.086538e-06

Joint ci ratio: 9.239508e-01	ci left: 2.374852e-06	ci right 6.527245e-06	k: 17	n:4170000
Cons ci ratio: 1.366255e-02	ci left: 1.922672e-02	ci right 1.949145e-02	k: 80726	n:4170000
KS ci ratio: 2.263212e+00	ci left: 5.808377e-08	ci right 1.732538e-06	k: 2	n:4170000
ACOT4   4170000 perm   6734 sec   (619 perm/sec)   p_kst 4.796163e-07   p_cons 1.935875e-02   p_joint 4.076739e-06

Joint ci ratio: 9.239508e-01	ci left: 2.369171e-06	ci right 6.511630e-06	k: 17	n:4180000
Cons ci ratio: 1.364848e-02	ci left: 1.922054e-02	ci right 1.948491e-02	k: 80893	n:4180000
KS ci ratio: 2.263212e+00	ci left: 5.794481e-08	ci right 1.728393e-06	k: 2	n:4180000
ACOT4   4180000 perm   6764 sec   (618 perm/sec)   p_kst 4.784689e-07   p_cons 1.935239e-02   p_joint 4.066986e-06

Joint ci ratio: 9.239508e-01	ci left: 2.363516e-06	ci right 6.496089e-06	k: 17	n:4190000
Cons ci ratio: 1.363051e-02	ci left: 1.922533e-02	ci right 1.948941e-02	k: 81106	n:4190000
KS ci ratio: 2.263212e+00	ci left: 5.780652e-08	ci right 1.724268e-06	k: 2	n:4190000
ACOT4   4190000 perm   6795 sec   (617 perm/sec)   p_kst 4.773270e-07   p_cons 1.935704e-02   p_joint 4.057279e-06

Joint ci ratio: 9.239508e-01	ci left: 2.357889e-06	ci right 6.480622e-06	k: 17	n:4200000
Cons ci ratio: 1.361458e-02	ci left: 1.922464e-02	ci right 1.948840e-02	k: 81296	n:4200000
KS ci ratio: 2.263212e+00	ci left: 5.766888e-08	ci right 1.720163e-06	k: 2	n:4200000
ACOT4   4200000 perm   6826 sec   (615 perm/sec)   p_kst 4.761905e-07   p_cons 1.935619e-02   p_joint 4.047619e-06

Joint ci ratio: 9.239508e-01	ci left: 2.352288e-06	ci right 6.465229e-06	k: 17	n:4210000
Cons ci ratio: 1.359871e-02	ci left: 1.922395e-02	ci right 1.948740e-02	k: 81486	n:4210000
KS ci ratio: 2.263212e+00	ci left: 5.753190e-08	ci right 1.716077e-06	k: 2	n:4210000
ACOT4   4210000 perm   6857 sec   (614 perm/sec)   p_kst 4.750594e-07   p_cons 1.935534e-02   p_joint 4.038005e-06

Joint ci ratio: 9.239508e-01	ci left: 2.346714e-06	ci right 6.449908e-06	k: 17	n:4220000
Cons ci ratio: 1.358238e-02	ci left: 1.922469e-02	ci right 1.948782e-02	k: 81682	n:4220000
KS ci ratio: 2.263212e+00	ci left: 5.739557e-08	ci right 1.712010e-06	k: 2	n:4220000
ACOT4   4220000 perm   6888 sec   (613 perm/sec)   p_kst 4.739336e-07   p_cons 1.935592e-02   p_joint 4.028436e-06

Joint ci ratio: 1.131605e+00	ci left: 1.298147e-06	ci right 4.652959e-06	k: 11	n:4230000
Cons ci ratio: 1.356754e-02	ci left: 1.922141e-02	ci right 1.948421e-02	k: 81861	n:4230000
KS ci ratio: 2.263212e+00	ci left: 5.725988e-08	ci right 1.707963e-06	k: 2	n:4230000
ACOT4   4230000 perm   6919 sec   (611 perm/sec)   p_kst 4.728132e-07   p_cons 1.935248e-02   p_joint 2.600473e-06

Joint ci ratio: 1.131605e+00	ci left: 1.295086e-06	ci right 4.641985e-06	k: 11	n:4240000
Cons ci ratio: 1.355150e-02	ci left: 1.922168e-02	ci right 1.948417e-02	k: 82055	n:4240000
KS ci ratio: 2.263212e+00	ci left: 5.712483e-08	ci right 1.703935e-06	k: 2	n:4240000
ACOT4   4240000 perm   6950 sec   (610 perm/sec)   p_kst 4.716981e-07   p_cons 1.935259e-02   p_joint 2.594340e-06

Joint ci ratio: 1.131605e+00	ci left: 1.292038e-06	ci right 4.631063e-06	k: 11	n:4250000
Cons ci ratio: 1.353357e-02	ci left: 1.922734e-02	ci right 1.948955e-02	k: 82272	n:4250000
KS ci ratio: 2.263212e+00	ci left: 5.699042e-08	ci right 1.699925e-06	k: 2	n:4250000
ACOT4   4250000 perm   6981 sec   (609 perm/sec)   p_kst 4.705882e-07   p_cons 1.935812e-02   p_joint 2.588235e-06

Joint ci ratio: 1.131605e+00	ci left: 1.289005e-06	ci right 4.620192e-06	k: 11	n:4260000
Cons ci ratio: 1.351581e-02	ci left: 1.923274e-02	ci right 1.949468e-02	k: 82488	n:4260000
KS ci ratio: 2.263212e+00	ci left: 5.685664e-08	ci right 1.695935e-06	k: 2	n:4260000
ACOT4   4260000 perm   7012 sec   (607 perm/sec)   p_kst 4.694836e-07   p_cons 1.936338e-02   p_joint 2.582160e-06

Joint ci ratio: 1.131605e+00	ci left: 1.285987e-06	ci right 4.609372e-06	k: 11	n:4270000
Cons ci ratio: 1.350044e-02	ci left: 1.923157e-02	ci right 1.949320e-02	k: 82676	n:4270000
KS ci ratio: 2.263212e+00	ci left: 5.672349e-08	ci right 1.691963e-06	k: 2	n:4270000
ACOT4   4270000 perm   7044 sec   (606 perm/sec)   p_kst 4.683841e-07   p_cons 1.936206e-02   p_joint 2.576112e-06

Joint ci ratio: 1.131605e+00	ci left: 1.282982e-06	ci right 4.598602e-06	k: 11	n:4280000
Cons ci ratio: 1.348521e-02	ci left: 1.923018e-02	ci right 1.949150e-02	k: 82863	n:4280000
KS ci ratio: 2.263212e+00	ci left: 5.659096e-08	ci right 1.688010e-06	k: 2	n:4280000
ACOT4   4280000 perm   7075 sec   (605 perm/sec)   p_kst 4.672897e-07   p_cons 1.936051e-02   p_joint 2.570093e-06

Joint ci ratio: 1.131605e+00	ci left: 1.279991e-06	ci right 4.587883e-06	k: 11	n:4290000
Cons ci ratio: 1.347020e-02	ci left: 1.922834e-02	ci right 1.948933e-02	k: 83048	n:4290000
KS ci ratio: 2.263212e+00	ci left: 5.645904e-08	ci right 1.684075e-06	k: 2	n:4290000
ACOT4   4290000 perm   7106 sec   (604 perm/sec)   p_kst 4.662005e-07   p_cons 1.935851e-02   p_joint 2.564103e-06

Joint ci ratio: 1.131605e+00	ci left: 1.277015e-06	ci right 4.577214e-06	k: 11	n:4300000
Cons ci ratio: 1.345573e-02	ci left: 1.922511e-02	ci right 1.948577e-02	k: 83227	n:4300000
KS ci ratio: 2.263212e+00	ci left: 5.632774e-08	ci right 1.680159e-06	k: 2	n:4300000
ACOT4   4300000 perm   7138 sec   (602 perm/sec)   p_kst 4.651163e-07   p_cons 1.935512e-02   p_joint 2.558140e-06

Joint ci ratio: 1.131605e+00	ci left: 1.274052e-06	ci right 4.566594e-06	k: 11	n:4310000
Cons ci ratio: 1.344081e-02	ci left: 1.922328e-02	ci right 1.948363e-02	k: 83412	n:4310000
KS ci ratio: 2.263212e+00	ci left: 5.619705e-08	ci right 1.676261e-06	k: 2	n:4310000
ACOT4   4310000 perm   7172 sec   (601 perm/sec)   p_kst 4.640371e-07   p_cons 1.935313e-02   p_joint 2.552204e-06

Joint ci ratio: 1.087211e+00	ci left: 1.435319e-06	ci right 4.852214e-06	k: 12	n:4320000
Cons ci ratio: 1.342496e-02	ci left: 1.922423e-02	ci right 1.948428e-02	k: 83609	n:4320000
KS ci ratio: 2.263212e+00	ci left: 5.606697e-08	ci right 1.672380e-06	k: 2	n:4320000
ACOT4   4320000 perm   7207 sec   (599 perm/sec)   p_kst 4.629630e-07   p_cons 1.935394e-02   p_joint 2.777778e-06

Joint ci ratio: 1.087211e+00	ci left: 1.432004e-06	ci right 4.841008e-06	k: 12	n:4330000
Cons ci ratio: 1.340827e-02	ci left: 1.922771e-02	ci right 1.948748e-02	k: 83817	n:4330000
KS ci ratio: 2.263212e+00	ci left: 5.593748e-08	ci right 1.668518e-06	k: 2	n:4330000
ACOT4   4330000 perm   7243 sec   (598 perm/sec)   p_kst 4.618938e-07   p_cons 1.935727e-02   p_joint 2.771363e-06

Joint ci ratio: 1.087211e+00	ci left: 1.428705e-06	ci right 4.829853e-06	k: 12	n:4340000
Cons ci ratio: 1.339400e-02	ci left: 1.922451e-02	ci right 1.948396e-02	k: 83996	n:4340000
KS ci ratio: 2.263212e+00	ci left: 5.580859e-08	ci right 1.664674e-06	k: 2	n:4340000
ACOT4   4340000 perm   7277 sec   (596 perm/sec)   p_kst 4.608295e-07   p_cons 1.935392e-02   p_joint 2.764977e-06

Joint ci ratio: 1.087211e+00	ci left: 1.425420e-06	ci right 4.818750e-06	k: 12	n:4350000
Cons ci ratio: 1.337864e-02	ci left: 1.922454e-02	ci right 1.948369e-02	k: 84189	n:4350000
KS ci ratio: 2.263212e+00	ci left: 5.568030e-08	ci right 1.660847e-06	k: 2	n:4350000
ACOT4   4350000 perm   7311 sec   (595 perm/sec)   p_kst 4.597701e-07   p_cons 1.935379e-02   p_joint 2.758621e-06

Joint ci ratio: 1.087211e+00	ci left: 1.422151e-06	ci right 4.807698e-06	k: 12	n:4360000
Cons ci ratio: 1.336438e-02	ci left: 1.922159e-02	ci right 1.948043e-02	k: 84369	n:4360000
KS ci ratio: 2.263212e+00	ci left: 5.555259e-08	ci right 1.657037e-06	k: 2	n:4360000
ACOT4   4360000 perm   7348 sec   (593 perm/sec)   p_kst 4.587156e-07   p_cons 1.935069e-02   p_joint 2.752294e-06

Joint ci ratio: 1.087211e+00	ci left: 1.418897e-06	ci right 4.796696e-06	k: 12	n:4370000
Cons ci ratio: 1.334824e-02	ci left: 1.922413e-02	ci right 1.948269e-02	k: 84573	n:4370000
KS ci ratio: 2.263212e+00	ci left: 5.542547e-08	ci right 1.653246e-06	k: 2	n:4370000
ACOT4   4370000 perm   7385 sec   (592 perm/sec)   p_kst 4.576659e-07   p_cons 1.935309e-02   p_joint 2.745995e-06

Joint ci ratio: 1.087211e+00	ci left: 1.415657e-06	ci right 4.785745e-06	k: 12	n:4380000
Cons ci ratio: 1.333407e-02	ci left: 1.922120e-02	ci right 1.947944e-02	k: 84753	n:4380000
KS ci ratio: 2.263212e+00	ci left: 5.529893e-08	ci right 1.649471e-06	k: 2	n:4380000
ACOT4   4380000 perm   7422 sec   (590 perm/sec)   p_kst 4.566210e-07   p_cons 1.935000e-02   p_joint 2.739726e-06

Joint ci ratio: 1.047662e+00	ci left: 1.576755e-06	ci right 5.063866e-06	k: 13	n:4390000
Cons ci ratio: 1.331860e-02	ci left: 1.922214e-02	ci right 1.948009e-02	k: 84950	n:4390000
KS ci ratio: 2.263212e+00	ci left: 5.517296e-08	ci right 1.645714e-06	k: 2	n:4390000
ACOT4   4390000 perm   7458 sec   (589 perm/sec)   p_kst 4.555809e-07   p_cons 1.935080e-02   p_joint 2.961276e-06

Joint ci ratio: 1.047662e+00	ci left: 1.573172e-06	ci right 5.052357e-06	k: 13	n:4400000
Cons ci ratio: 1.330366e-02	ci left: 1.922172e-02	ci right 1.947937e-02	k: 85141	n:4400000
KS ci ratio: 2.263212e+00	ci left: 5.504757e-08	ci right 1.641973e-06	k: 2	n:4400000
ACOT4   4400000 perm   7496 sec   (587 perm/sec)   p_kst 4.545455e-07   p_cons 1.935023e-02   p_joint 2.954545e-06

Joint ci ratio: 1.047662e+00	ci left: 1.569605e-06	ci right 5.040901e-06	k: 13	n:4410000
Cons ci ratio: 1.329019e-02	ci left: 1.921723e-02	ci right 1.947456e-02	k: 85314	n:4410000
KS ci ratio: 2.263212e+00	ci left: 5.492274e-08	ci right 1.638250e-06	k: 2	n:4410000
ACOT4   4410000 perm   7529 sec   (586 perm/sec)   p_kst 4.535147e-07   p_cons 1.934558e-02   p_joint 2.947846e-06

Joint ci ratio: 1.047662e+00	ci left: 1.566053e-06	ci right 5.029496e-06	k: 13	n:4420000
Cons ci ratio: 1.327416e-02	ci left: 1.922020e-02	ci right 1.947726e-02	k: 85520	n:4420000
KS ci ratio: 2.263212e+00	ci left: 5.479848e-08	ci right 1.634544e-06	k: 2	n:4420000
ACOT4   4420000 perm   7561 sec   (585 perm/sec)   p_kst 4.524887e-07   p_cons 1.934842e-02   p_joint 2.941176e-06

Joint ci ratio: 1.047662e+00	ci left: 1.562518e-06	ci right 5.018143e-06	k: 13	n:4430000
Cons ci ratio: 1.325999e-02	ci left: 1.921799e-02	ci right 1.947474e-02	k: 85703	n:4430000
KS ci ratio: 2.263212e+00	ci left: 5.467479e-08	ci right 1.630854e-06	k: 2	n:4430000
ACOT4   4430000 perm   7594 sec   (583 perm/sec)   p_kst 4.514673e-07   p_cons 1.934605e-02   p_joint 2.934537e-06

Joint ci ratio: 1.012138e+00	ci left: 1.723859e-06	ci right 5.290450e-06	k: 14	n:4440000
Cons ci ratio: 1.324650e-02	ci left: 1.921399e-02	ci right 1.947042e-02	k: 85878	n:4440000
KS ci ratio: 2.263212e+00	ci left: 5.455164e-08	ci right 1.627181e-06	k: 2	n:4440000
ACOT4   4440000 perm   7627 sec   (582 perm/sec)   p_kst 4.504505e-07   p_cons 1.934189e-02   p_joint 3.153153e-06

Joint ci ratio: 1.012138e+00	ci left: 1.719985e-06	ci right 5.278561e-06	k: 14	n:4450000
Cons ci ratio: 1.323313e-02	ci left: 1.920978e-02	ci right 1.946590e-02	k: 86052	n:4450000
KS ci ratio: 2.263212e+00	ci left: 5.442906e-08	ci right 1.623524e-06	k: 2	n:4450000
ACOT4   4450000 perm   7660 sec   (581 perm/sec)   p_kst 4.494382e-07   p_cons 1.933753e-02   p_joint 3.146067e-06

Joint ci ratio: 1.012138e+00	ci left: 1.716129e-06	ci right 5.266726e-06	k: 14	n:4460000
Cons ci ratio: 1.321816e-02	ci left: 1.921029e-02	ci right 1.946612e-02	k: 86247	n:4460000
KS ci ratio: 2.263212e+00	ci left: 5.430702e-08	ci right 1.619884e-06	k: 2	n:4460000
ACOT4   4460000 perm   7695 sec   (580 perm/sec)   p_kst 4.484305e-07   p_cons 1.933789e-02   p_joint 3.139013e-06

Joint ci ratio: 1.012138e+00	ci left: 1.712290e-06	ci right 5.254943e-06	k: 14	n:4470000
Cons ci ratio: 1.320138e-02	ci left: 1.921614e-02	ci right 1.947173e-02	k: 86466	n:4470000
KS ci ratio: 2.263212e+00	ci left: 5.418553e-08	ci right 1.616260e-06	k: 2	n:4470000
ACOT4   4470000 perm   7729 sec   (578 perm/sec)   p_kst 4.474273e-07   p_cons 1.934362e-02   p_joint 3.131991e-06

Joint ci ratio: 1.012138e+00	ci left: 1.708468e-06	ci right 5.243213e-06	k: 14	n:4480000
Cons ci ratio: 1.318589e-02	ci left: 1.921841e-02	ci right 1.947373e-02	k: 86669	n:4480000
KS ci ratio: 2.263212e+00	ci left: 5.406458e-08	ci right 1.612653e-06	k: 2	n:4480000
ACOT4   4480000 perm   7766 sec   (577 perm/sec)   p_kst 4.464286e-07   p_cons 1.934576e-02   p_joint 3.125000e-06

Joint ci ratio: 1.012138e+00	ci left: 1.704663e-06	ci right 5.231536e-06	k: 14	n:4490000
Cons ci ratio: 1.317000e-02	ci left: 1.922201e-02	ci right 1.947706e-02	k: 86878	n:4490000
KS ci ratio: 2.263212e+00	ci left: 5.394416e-08	ci right 1.609061e-06	k: 2	n:4490000
ACOT4   4490000 perm   7804 sec   (575 perm/sec)   p_kst 4.454343e-07   p_cons 1.934922e-02   p_joint 3.118040e-06

Joint ci ratio: 1.012138e+00	ci left: 1.700874e-06	ci right 5.219910e-06	k: 14	n:4500000
Cons ci ratio: 1.315555e-02	ci left: 1.922160e-02	ci right 1.947636e-02	k: 87069	n:4500000
KS ci ratio: 2.263212e+00	ci left: 5.382429e-08	ci right 1.605485e-06	k: 2	n:4500000
ACOT4   4500000 perm   7838 sec   (574 perm/sec)   p_kst 4.444444e-07   p_cons 1.934867e-02   p_joint 3.111111e-06

Joint ci ratio: 1.012138e+00	ci left: 1.697103e-06	ci right 5.208336e-06	k: 14	n:4510000
Cons ci ratio: 1.314169e-02	ci left: 1.921964e-02	ci right 1.947410e-02	k: 87253	n:4510000
KS ci ratio: 2.263212e+00	ci left: 5.370494e-08	ci right 1.601925e-06	k: 2	n:4510000
ACOT4   4510000 perm   7871 sec   (573 perm/sec)   p_kst 4.434590e-07   p_cons 1.934656e-02   p_joint 3.104213e-06

Joint ci ratio: 1.012138e+00	ci left: 1.693348e-06	ci right 5.196813e-06	k: 14	n:4520000
Cons ci ratio: 1.312779e-02	ci left: 1.921791e-02	ci right 1.947208e-02	k: 87438	n:4520000
KS ci ratio: 2.263212e+00	ci left: 5.358613e-08	ci right 1.598381e-06	k: 2	n:4520000
ACOT4   4520000 perm   7904 sec   (572 perm/sec)   p_kst 4.424779e-07   p_cons 1.934469e-02   p_joint 3.097345e-06

Joint ci ratio: 1.012138e+00	ci left: 1.689610e-06	ci right 5.185341e-06	k: 14	n:4530000
Cons ci ratio: 1.311355e-02	ci left: 1.921729e-02	ci right 1.947118e-02	k: 87628	n:4530000
KS ci ratio: 2.263212e+00	ci left: 5.346784e-08	ci right 1.594853e-06	k: 2	n:4530000
ACOT4   4530000 perm   7938 sec   (571 perm/sec)   p_kst 4.415011e-07   p_cons 1.934393e-02   p_joint 3.090508e-06

Joint ci ratio: 1.012138e+00	ci left: 1.685889e-06	ci right 5.173920e-06	k: 14	n:4540000
Cons ci ratio: 1.309815e-02	ci left: 1.922019e-02	ci right 1.947381e-02	k: 87834	n:4540000
KS ci ratio: 2.263212e+00	ci left: 5.335007e-08	ci right 1.591340e-06	k: 2	n:4540000
ACOT4   4540000 perm   7972 sec   (570 perm/sec)   p_kst 4.405286e-07   p_cons 1.934670e-02   p_joint 3.083700e-06

Joint ci ratio: 1.012138e+00	ci left: 1.682183e-06	ci right 5.162549e-06	k: 14	n:4550000
Cons ci ratio: 1.308401e-02	ci left: 1.921957e-02	ci right 1.947291e-02	k: 88024	n:4550000
KS ci ratio: 2.263212e+00	ci left: 5.323281e-08	ci right 1.587843e-06	k: 2	n:4550000
ACOT4   4550000 perm   8005 sec   (568 perm/sec)   p_kst 4.395604e-07   p_cons 1.934593e-02   p_joint 3.076923e-06

Joint ci ratio: 1.012138e+00	ci left: 1.678494e-06	ci right 5.151227e-06	k: 14	n:4560000
Cons ci ratio: 1.306894e-02	ci left: 1.922179e-02	ci right 1.947487e-02	k: 88227	n:4560000
KS ci ratio: 2.263212e+00	ci left: 5.311607e-08	ci right 1.584360e-06	k: 2	n:4560000
ACOT4   4560000 perm   8039 sec   (567 perm/sec)   p_kst 4.385965e-07   p_cons 1.934803e-02   p_joint 3.070175e-06

Joint ci ratio: 1.012138e+00	ci left: 1.674822e-06	ci right 5.139956e-06	k: 14	n:4570000
Cons ci ratio: 1.305436e-02	ci left: 1.922270e-02	ci right 1.947550e-02	k: 88424	n:4570000
KS ci ratio: 2.263212e+00	ci left: 5.299985e-08	ci right 1.580894e-06	k: 2	n:4570000
ACOT4   4570000 perm   8072 sec   (566 perm/sec)   p_kst 4.376368e-07   p_cons 1.934880e-02   p_joint 3.063457e-06

Joint ci ratio: 1.012138e+00	ci left: 1.671165e-06	ci right 5.128733e-06	k: 14	n:4580000
Cons ci ratio: 1.304037e-02	ci left: 1.922208e-02	ci right 1.947460e-02	k: 88614	n:4580000
KS ci ratio: 2.263212e+00	ci left: 5.288413e-08	ci right 1.577442e-06	k: 2	n:4580000
ACOT4   4580000 perm   8106 sec   (565 perm/sec)   p_kst 4.366812e-07   p_cons 1.934803e-02   p_joint 3.056769e-06

Joint ci ratio: 1.012138e+00	ci left: 1.667524e-06	ci right 5.117559e-06	k: 14	n:4590000
Cons ci ratio: 1.302671e-02	ci left: 1.922059e-02	ci right 1.947283e-02	k: 88800	n:4590000
KS ci ratio: 2.263212e+00	ci left: 5.276891e-08	ci right 1.574005e-06	k: 2	n:4590000
ACOT4   4590000 perm   8140 sec   (564 perm/sec)   p_kst 4.357298e-07   p_cons 1.934641e-02   p_joint 3.050109e-06

Joint ci ratio: 1.012138e+00	ci left: 1.663899e-06	ci right 5.106434e-06	k: 14	n:4600000
Cons ci ratio: 1.301228e-02	ci left: 1.922149e-02	ci right 1.947346e-02	k: 88997	n:4600000
KS ci ratio: 2.263212e+00	ci left: 5.265420e-08	ci right 1.570583e-06	k: 2	n:4600000
ACOT4   4600000 perm   8175 sec   (563 perm/sec)   p_kst 4.347826e-07   p_cons 1.934717e-02   p_joint 3.043478e-06

Joint ci ratio: 1.012138e+00	ci left: 1.660290e-06	ci right 5.095357e-06	k: 14	n:4610000
Cons ci ratio: 1.299835e-02	ci left: 1.922110e-02	ci right 1.947278e-02	k: 89188	n:4610000
KS ci ratio: 2.263212e+00	ci left: 5.253998e-08	ci right 1.567176e-06	k: 2	n:4610000
ACOT4   4610000 perm   8211 sec   (561 perm/sec)   p_kst 4.338395e-07   p_cons 1.934664e-02   p_joint 3.036876e-06

Joint ci ratio: 1.012138e+00	ci left: 1.656696e-06	ci right 5.084328e-06	k: 14	n:4620000
Cons ci ratio: 1.298490e-02	ci left: 1.921940e-02	ci right 1.947081e-02	k: 89373	n:4620000
KS ci ratio: 2.263212e+00	ci left: 5.242626e-08	ci right 1.563784e-06	k: 2	n:4620000
ACOT4   4620000 perm   8246 sec   (560 perm/sec)   p_kst 4.329004e-07   p_cons 1.934481e-02   p_joint 3.030303e-06

Joint ci ratio: 1.012138e+00	ci left: 1.653118e-06	ci right 5.073347e-06	k: 14	n:4630000
Cons ci ratio: 1.297253e-02	ci left: 1.921471e-02	ci right 1.946581e-02	k: 89544	n:4630000
KS ci ratio: 2.263212e+00	ci left: 5.231302e-08	ci right 1.560407e-06	k: 2	n:4630000
ACOT4   4630000 perm   8283 sec   (559 perm/sec)   p_kst 4.319654e-07   p_cons 1.933996e-02   p_joint 3.023758e-06

Joint ci ratio: 1.012138e+00	ci left: 1.649555e-06	ci right 5.062413e-06	k: 14	n:4640000
Cons ci ratio: 1.295908e-02	ci left: 1.921325e-02	ci right 1.946407e-02	k: 89730	n:4640000
KS ci ratio: 2.263212e+00	ci left: 5.220028e-08	ci right 1.557044e-06	k: 2	n:4640000
ACOT4   4640000 perm   8317 sec   (558 perm/sec)   p_kst 4.310345e-07   p_cons 1.933836e-02   p_joint 3.017241e-06

Joint ci ratio: 1.012138e+00	ci left: 1.646007e-06	ci right 5.051526e-06	k: 14	n:4650000
Cons ci ratio: 1.294444e-02	ci left: 1.921545e-02	ci right 1.946601e-02	k: 89933	n:4650000
KS ci ratio: 2.263212e+00	ci left: 5.208802e-08	ci right 1.553695e-06	k: 2	n:4650000
ACOT4   4650000 perm   8351 sec   (557 perm/sec)   p_kst 4.301075e-07   p_cons 1.934043e-02   p_joint 3.010753e-06

Joint ci ratio: 1.012138e+00	ci left: 1.642475e-06	ci right 5.040686e-06	k: 14	n:4660000
Cons ci ratio: 1.293094e-02	ci left: 1.921443e-02	ci right 1.946471e-02	k: 90121	n:4660000
KS ci ratio: 2.263212e+00	ci left: 5.197624e-08	ci right 1.550361e-06	k: 2	n:4660000
ACOT4   4660000 perm   8385 sec   (556 perm/sec)   p_kst 4.291845e-07   p_cons 1.933927e-02   p_joint 3.004292e-06

Joint ci ratio: 1.012138e+00	ci left: 1.638958e-06	ci right 5.029892e-06	k: 14	n:4670000
Cons ci ratio: 1.291638e-02	ci left: 1.921661e-02	ci right 1.946664e-02	k: 90324	n:4670000
KS ci ratio: 2.263212e+00	ci left: 5.186495e-08	ci right 1.547041e-06	k: 2	n:4670000
ACOT4   4670000 perm   8419 sec   (555 perm/sec)   p_kst 4.282655e-07   p_cons 1.934133e-02   p_joint 2.997859e-06

Joint ci ratio: 1.012138e+00	ci left: 1.635456e-06	ci right 5.019145e-06	k: 14	n:4680000
Cons ci ratio: 1.290268e-02	ci left: 1.921644e-02	ci right 1.946620e-02	k: 90516	n:4680000
KS ci ratio: 2.263212e+00	ci left: 5.175412e-08	ci right 1.543736e-06	k: 2	n:4680000
ACOT4   4680000 perm   8452 sec   (554 perm/sec)   p_kst 4.273504e-07   p_cons 1.934103e-02   p_joint 2.991453e-06

Joint ci ratio: 9.799982e-01	ci left: 1.790062e-06	ci right 5.275094e-06	k: 15	n:4690000
Cons ci ratio: 1.288880e-02	ci left: 1.921691e-02	ci right 1.946641e-02	k: 90711	n:4690000
KS ci ratio: 2.263212e+00	ci left: 5.164377e-08	ci right 1.540444e-06	k: 2	n:4690000
ACOT4   4690000 perm   8487 sec   (553 perm/sec)   p_kst 4.264392e-07   p_cons 1.934136e-02   p_joint 3.198294e-06

Joint ci ratio: 9.799982e-01	ci left: 1.786253e-06	ci right 5.263871e-06	k: 15	n:4700000
Cons ci ratio: 1.287316e-02	ci left: 1.922268e-02	ci right 1.947195e-02	k: 90931	n:4700000
KS ci ratio: 2.263212e+00	ci left: 5.153389e-08	ci right 1.537167e-06	k: 2	n:4700000
ACOT4   4700000 perm   8522 sec   (552 perm/sec)   p_kst 4.255319e-07   p_cons 1.934702e-02   p_joint 3.191489e-06

Joint ci ratio: 9.799982e-01	ci left: 1.782461e-06	ci right 5.252695e-06	k: 15	n:4710000
Cons ci ratio: 1.285837e-02	ci left: 1.922610e-02	ci right 1.947513e-02	k: 91140	n:4710000
KS ci ratio: 2.263212e+00	ci left: 5.142448e-08	ci right 1.533903e-06	k: 2	n:4710000
ACOT4   4710000 perm   8556 sec   (551 perm/sec)   p_kst 4.246285e-07   p_cons 1.935032e-02   p_joint 3.184713e-06

Joint ci ratio: 9.799982e-01	ci left: 1.778685e-06	ci right 5.241566e-06	k: 15	n:4720000
Cons ci ratio: 1.284514e-02	ci left: 1.922507e-02	ci right 1.947382e-02	k: 91328	n:4720000
KS ci ratio: 2.263212e+00	ci left: 5.131553e-08	ci right 1.530653e-06	k: 2	n:4720000
ACOT4   4720000 perm   8590 sec   (549 perm/sec)   p_kst 4.237288e-07   p_cons 1.934915e-02   p_joint 3.177966e-06

Joint ci ratio: 9.799982e-01	ci left: 1.774924e-06	ci right 5.230485e-06	k: 15	n:4730000
Cons ci ratio: 1.283130e-02	ci left: 1.922594e-02	ci right 1.947444e-02	k: 91525	n:4730000
KS ci ratio: 2.263212e+00	ci left: 5.120704e-08	ci right 1.527417e-06	k: 2	n:4730000
ACOT4   4730000 perm   8625 sec   (548 perm/sec)   p_kst 4.228330e-07   p_cons 1.934989e-02   p_joint 3.171247e-06

Joint ci ratio: 9.799982e-01	ci left: 1.771180e-06	ci right 5.219450e-06	k: 15	n:4740000
Cons ci ratio: 1.281858e-02	ci left: 1.922365e-02	ci right 1.947187e-02	k: 91707	n:4740000
KS ci ratio: 2.263212e+00	ci left: 5.109901e-08	ci right 1.524195e-06	k: 2	n:4740000
ACOT4   4740000 perm   8660 sec   (547 perm/sec)   p_kst 4.219409e-07   p_cons 1.934747e-02   p_joint 3.164557e-06

Joint ci ratio: 9.799982e-01	ci left: 1.767451e-06	ci right 5.208462e-06	k: 15	n:4750000
Cons ci ratio: 1.280284e-02	ci left: 1.923040e-02	ci right 1.947840e-02	k: 91932	n:4750000
KS ci ratio: 2.263212e+00	ci left: 5.099143e-08	ci right 1.520986e-06	k: 2	n:4750000
ACOT4   4750000 perm   8694 sec   (546 perm/sec)   p_kst 4.210526e-07   p_cons 1.935411e-02   p_joint 3.157895e-06

Joint ci ratio: 9.799982e-01	ci left: 1.763738e-06	ci right 5.197520e-06	k: 15	n:4760000
Cons ci ratio: 1.278950e-02	ci left: 1.923021e-02	ci right 1.947794e-02	k: 92124	n:4760000
KS ci ratio: 2.263212e+00	ci left: 5.088431e-08	ci right 1.517791e-06	k: 2	n:4760000
ACOT4   4760000 perm   8730 sec   (545 perm/sec)   p_kst 4.201681e-07   p_cons 1.935378e-02   p_joint 3.151261e-06

Joint ci ratio: 9.799983e-01	ci left: 1.760040e-06	ci right 5.186623e-06	k: 15	n:4770000
Cons ci ratio: 1.277520e-02	ci left: 1.923294e-02	ci right 1.948043e-02	k: 92330	n:4770000
KS ci ratio: 2.263212e+00	ci left: 5.077763e-08	ci right 1.514609e-06	k: 2	n:4770000
ACOT4   4770000 perm   8764 sec   (544 perm/sec)   p_kst 4.192872e-07   p_cons 1.935639e-02   p_joint 3.144654e-06

Joint ci ratio: 9.799983e-01	ci left: 1.756358e-06	ci right 5.175773e-06	k: 15	n:4780000
Cons ci ratio: 1.276419e-02	ci left: 1.922607e-02	ci right 1.947326e-02	k: 92490	n:4780000
KS ci ratio: 2.263212e+00	ci left: 5.067140e-08	ci right 1.511440e-06	k: 2	n:4780000
ACOT4   4780000 perm   8800 sec   (543 perm/sec)   p_kst 4.184100e-07   p_cons 1.934937e-02   p_joint 3.138075e-06

Joint ci ratio: 9.799983e-01	ci left: 1.752691e-06	ci right 5.164967e-06	k: 15	n:4790000
Cons ci ratio: 1.275139e-02	ci left: 1.922464e-02	ci right 1.947156e-02	k: 92676	n:4790000
KS ci ratio: 2.263212e+00	ci left: 5.056562e-08	ci right 1.508285e-06	k: 2	n:4790000
ACOT4   4790000 perm   8835 sec   (542 perm/sec)   p_kst 4.175365e-07   p_cons 1.934781e-02   p_joint 3.131524e-06

Joint ci ratio: 9.799983e-01	ci left: 1.749040e-06	ci right 5.154207e-06	k: 15	n:4800000
Cons ci ratio: 1.273771e-02	ci left: 1.922591e-02	ci right 1.947258e-02	k: 92875	n:4800000
KS ci ratio: 2.263212e+00	ci left: 5.046027e-08	ci right 1.505142e-06	k: 2	n:4800000
ACOT4   4800000 perm   8870 sec   (541 perm/sec)   p_kst 4.166667e-07   p_cons 1.934896e-02   p_joint 3.125000e-06

Joint ci ratio: 9.799983e-01	ci left: 1.745404e-06	ci right 5.143491e-06	k: 15	n:4810000
Cons ci ratio: 1.272345e-02	ci left: 1.922905e-02	ci right 1.947548e-02	k: 93083	n:4810000
KS ci ratio: 2.263212e+00	ci left: 5.035536e-08	ci right 1.502013e-06	k: 2	n:4810000
ACOT4   4810000 perm   8906 sec   (540 perm/sec)   p_kst 4.158004e-07   p_cons 1.935198e-02   p_joint 3.118503e-06

Joint ci ratio: 9.799983e-01	ci left: 1.741782e-06	ci right 5.132820e-06	k: 15	n:4820000
Cons ci ratio: 1.270848e-02	ci left: 1.923445e-02	ci right 1.948065e-02	k: 93302	n:4820000
KS ci ratio: 2.263212e+00	ci left: 5.025089e-08	ci right 1.498897e-06	k: 2	n:4820000
ACOT4   4820000 perm   8941 sec   (539 perm/sec)   p_kst 4.149378e-07   p_cons 1.935726e-02   p_joint 3.112033e-06

Joint ci ratio: 9.799983e-01	ci left: 1.738176e-06	ci right 5.122193e-06	k: 15	n:4830000
Cons ci ratio: 1.269633e-02	ci left: 1.923157e-02	ci right 1.947750e-02	k: 93481	n:4830000
KS ci ratio: 2.263212e+00	ci left: 5.014685e-08	ci right 1.495794e-06	k: 2	n:4830000
ACOT4   4830000 perm   8976 sec   (538 perm/sec)   p_kst 4.140787e-07   p_cons 1.935424e-02   p_joint 3.105590e-06

Joint ci ratio: 9.799983e-01	ci left: 1.734585e-06	ci right 5.111610e-06	k: 15	n:4840000
Cons ci ratio: 1.268248e-02	ci left: 1.923385e-02	ci right 1.947954e-02	k: 93685	n:4840000
KS ci ratio: 2.263212e+00	ci left: 5.004324e-08	ci right 1.492703e-06	k: 2	n:4840000
ACOT4   4840000 perm   9012 sec   (537 perm/sec)   p_kst 4.132231e-07   p_cons 1.935640e-02   p_joint 3.099174e-06

Joint ci ratio: 9.799983e-01	ci left: 1.731008e-06	ci right 5.101071e-06	k: 15	n:4850000
Cons ci ratio: 1.266958e-02	ci left: 1.923345e-02	ci right 1.947888e-02	k: 93876	n:4850000
KS ci ratio: 2.263212e+00	ci left: 4.994006e-08	ci right 1.489626e-06	k: 2	n:4850000
ACOT4   4850000 perm   9047 sec   (536 perm/sec)   p_kst 4.123711e-07   p_cons 1.935588e-02   p_joint 3.092784e-06

Joint ci ratio: 9.799983e-01	ci left: 1.727447e-06	ci right 5.090575e-06	k: 15	n:4860000
Cons ci ratio: 1.265774e-02	ci left: 1.922997e-02	ci right 1.947513e-02	k: 94052	n:4860000
KS ci ratio: 2.263212e+00	ci left: 4.983730e-08	ci right 1.486560e-06	k: 2	n:4860000
ACOT4   4860000 perm   9082 sec   (535 perm/sec)   p_kst 4.115226e-07   p_cons 1.935226e-02   p_joint 3.086420e-06

Joint ci ratio: 9.799983e-01	ci left: 1.723900e-06	ci right 5.080122e-06	k: 15	n:4870000
Cons ci ratio: 1.264429e-02	ci left: 1.923142e-02	ci right 1.947634e-02	k: 94252	n:4870000
KS ci ratio: 2.263212e+00	ci left: 4.973497e-08	ci right 1.483508e-06	k: 2	n:4870000
ACOT4   4870000 perm   9119 sec   (534 perm/sec)   p_kst 4.106776e-07   p_cons 1.935359e-02   p_joint 3.080082e-06

Joint ci ratio: 9.799983e-01	ci left: 1.720367e-06	ci right 5.069712e-06	k: 15	n:4880000
Cons ci ratio: 1.263260e-02	ci left: 1.922776e-02	ci right 1.947240e-02	k: 94427	n:4880000
KS ci ratio: 2.263212e+00	ci left: 4.963305e-08	ci right 1.480468e-06	k: 2	n:4880000
ACOT4   4880000 perm   9155 sec   (533 perm/sec)   p_kst 4.098361e-07   p_cons 1.934980e-02   p_joint 3.073770e-06

Joint ci ratio: 9.799983e-01	ci left: 1.716849e-06	ci right 5.059344e-06	k: 15	n:4890000
Cons ci ratio: 1.261998e-02	ci left: 1.922697e-02	ci right 1.947135e-02	k: 94616	n:4890000
KS ci ratio: 2.263212e+00	ci left: 4.953155e-08	ci right 1.477440e-06	k: 2	n:4890000
ACOT4   4890000 perm   9191 sec   (532 perm/sec)   p_kst 4.089980e-07   p_cons 1.934888e-02   p_joint 3.067485e-06

Joint ci ratio: 9.799983e-01	ci left: 1.713345e-06	ci right 5.049019e-06	k: 15	n:4900000
Cons ci ratio: 1.260652e-02	ci left: 1.922882e-02	ci right 1.947297e-02	k: 94818	n:4900000
KS ci ratio: 2.263212e+00	ci left: 4.943047e-08	ci right 1.474425e-06	k: 2	n:4900000
ACOT4   4900000 perm   9227 sec   (531 perm/sec)   p_kst 4.081633e-07   p_cons 1.935061e-02   p_joint 3.061224e-06

Joint ci ratio: 9.799983e-01	ci left: 1.709856e-06	ci right 5.038736e-06	k: 15	n:4910000
Cons ci ratio: 1.259344e-02	ci left: 1.922966e-02	ci right 1.947356e-02	k: 95015	n:4910000
KS ci ratio: 2.263212e+00	ci left: 4.932980e-08	ci right 1.471422e-06	k: 2	n:4910000
ACOT4   4910000 perm   9262 sec   (530 perm/sec)   p_kst 4.073320e-07   p_cons 1.935132e-02   p_joint 3.054990e-06

Joint ci ratio: 9.799983e-01	ci left: 1.706380e-06	ci right 5.028495e-06	k: 15	n:4920000
Cons ci ratio: 1.257986e-02	ci left: 1.923211e-02	ci right 1.947577e-02	k: 95220	n:4920000
KS ci ratio: 2.263212e+00	ci left: 4.922953e-08	ci right 1.468432e-06	k: 2	n:4920000
ACOT4   4920000 perm   9298 sec   (529 perm/sec)   p_kst 4.065041e-07   p_cons 1.935366e-02   p_joint 3.048780e-06

Joint ci ratio: 9.799983e-01	ci left: 1.702919e-06	ci right 5.018295e-06	k: 15	n:4930000
Cons ci ratio: 1.256693e-02	ci left: 1.923273e-02	ci right 1.947615e-02	k: 95416	n:4930000
KS ci ratio: 2.263212e+00	ci left: 4.912967e-08	ci right 1.465453e-06	k: 2	n:4930000
ACOT4   4930000 perm   9334 sec   (528 perm/sec)   p_kst 4.056795e-07   p_cons 1.935416e-02   p_joint 3.042596e-06

Joint ci ratio: 9.799983e-01	ci left: 1.699472e-06	ci right 5.008137e-06	k: 15	n:4940000
Cons ci ratio: 1.255591e-02	ci left: 1.922770e-02	ci right 1.947084e-02	k: 95584	n:4940000
KS ci ratio: 2.263212e+00	ci left: 4.903022e-08	ci right 1.462487e-06	k: 2	n:4940000
ACOT4   4940000 perm   9370 sec   (527 perm/sec)   p_kst 4.048583e-07   p_cons 1.934899e-02   p_joint 3.036437e-06

Joint ci ratio: 9.799983e-01	ci left: 1.696039e-06	ci right 4.998019e-06	k: 15	n:4950000
Cons ci ratio: 1.254312e-02	ci left: 1.922812e-02	ci right 1.947102e-02	k: 95779	n:4950000
KS ci ratio: 2.263212e+00	ci left: 4.893117e-08	ci right 1.459532e-06	k: 2	n:4950000
ACOT4   4950000 perm   9406 sec   (526 perm/sec)   p_kst 4.040404e-07   p_cons 1.934929e-02   p_joint 3.030303e-06

Joint ci ratio: 9.799983e-01	ci left: 1.692619e-06	ci right 4.987942e-06	k: 15	n:4960000
Cons ci ratio: 1.253024e-02	ci left: 1.922895e-02	ci right 1.947161e-02	k: 95976	n:4960000
KS ci ratio: 2.263212e+00	ci left: 4.883252e-08	ci right 1.456589e-06	k: 2	n:4960000
ACOT4   4960000 perm   9442 sec   (525 perm/sec)   p_kst 4.032258e-07   p_cons 1.935000e-02   p_joint 3.024194e-06

Joint ci ratio: 9.799983e-01	ci left: 1.689213e-06	ci right 4.977906e-06	k: 15	n:4970000
Cons ci ratio: 1.251733e-02	ci left: 1.922998e-02	ci right 1.947240e-02	k: 96174	n:4970000
KS ci ratio: 2.263212e+00	ci left: 4.873426e-08	ci right 1.453659e-06	k: 2	n:4970000
ACOT4   4970000 perm   9479 sec   (524 perm/sec)   p_kst 4.024145e-07   p_cons 1.935091e-02   p_joint 3.018109e-06

Joint ci ratio: 9.799983e-01	ci left: 1.685821e-06	ci right 4.967911e-06	k: 15	n:4980000
Cons ci ratio: 1.250466e-02	ci left: 1.923040e-02	ci right 1.947257e-02	k: 96369	n:4980000
KS ci ratio: 2.263212e+00	ci left: 4.863640e-08	ci right 1.450740e-06	k: 2	n:4980000
ACOT4   4980000 perm   9515 sec   (523 perm/sec)   p_kst 4.016064e-07   p_cons 1.935120e-02   p_joint 3.012048e-06

Joint ci ratio: 9.799983e-01	ci left: 1.682443e-06	ci right 4.957955e-06	k: 15	n:4990000
Cons ci ratio: 1.249084e-02	ci left: 1.923441e-02	ci right 1.947637e-02	k: 96582	n:4990000
KS ci ratio: 2.263212e+00	ci left: 4.853894e-08	ci right 1.447832e-06	k: 2	n:4990000
ACOT4   4990000 perm   9551 sec   (522 perm/sec)   p_kst 4.008016e-07   p_cons 1.935511e-02   p_joint 3.006012e-06

Joint ci ratio: 9.799983e-01	ci left: 1.679078e-06	ci right 4.948039e-06	k: 15	n:5000000
Cons ci ratio: 1.247792e-02	ci left: 1.923582e-02	ci right 1.947754e-02	k: 96782	n:5000000
KS ci ratio: 2.263212e+00	ci left: 4.844186e-08	ci right 1.444937e-06	k: 2	n:5000000
ACOT4   5000000 perm   9588 sec   (521 perm/sec)   p_kst 4.000000e-07   p_cons 1.935640e-02   p_joint 3.000000e-06

Outputting figure to mutsig2_images.part000000000002/ACOT4.3_1278_5000000_4e-07_0.019356_3e-06.png
                gene_name: ACOT4
               theta_stop: 2.3 
                    nperm: 5000000 
                     p_ks: 4.00e-07 
        ci_ks_bounds_left: 4.84e-08 
       ci_ks_bounds_right: 1.44e-06 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.019 
                  p_joint: 3.00e-06 
     ci_joint_bounds_left: 1.68e-06 
    ci_joint_bounds_right: 4.95e-06 

Current progress: 66 percent done.
ACOT8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.775184e-02	ci left: 6.567594e-01	ci right 6.753438e-01	k: 6661	n:10000
Cons ci ratio: 3.023834e-02	ci left: 6.173352e-01	ci right 6.363908e-01	k: 6269	n:10000
KS ci ratio: 4.386771e-02	ci left: 4.341296e-01	ci right 4.537031e-01	k: 4439	n:10000
ACOT8   10000 perm   1 sec   (6996 perm/sec)   p_kst 4.439000e-01   p_cons 6.269000e-01   p_joint 6.661000e-01

Outputting figure to mutsig2_images.part000000000002/ACOT8.3_984_10000_0.4439_0.6269_0.6661.png
                gene_name: ACOT8
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 67 percent done.
ACOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.461592e-02	ci left: 3.306139e-01	ci right 3.492795e-01	k: 3399	n:10000
Cons ci ratio: 3.484857e-02	ci left: 5.487016e-01	ci right 5.682643e-01	k: 5585	n:10000
KS ci ratio: 7.614384e-02	ci left: 2.014608e-01	ci right 2.175088e-01	k: 2094	n:10000
ACOX1   10000 perm   2 sec   (6507 perm/sec)   p_kst 2.094000e-01   p_cons 5.585000e-01   p_joint 3.399000e-01

Outputting figure to mutsig2_images.part000000000002/ACOX1.3_2204_10000_0.2094_0.5585_0.3399.png
                gene_name: ACOX1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 69 percent done.
ACSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.172038e-02	ci left: 7.566645e-01	ci right 7.733809e-01	k: 7651	n:10000
KS ci ratio: 2.284292e-02	ci left: 7.378529e-01	ci right 7.550034e-01	k: 7465	n:10000
ACSL1   10000 perm   2 sec   (6556 perm/sec)   p_kst 7.465000e-01   p_cons 7.651000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACSL1.3_2177_10000_0.7465_0.7651_1.png
                gene_name: ACSL1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
ABO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.485455e-01	ci left: 6.024541e-02	ci right 7.000980e-02	k: 650	n:10000
Cons ci ratio: 2.309509e-01	ci left: 2.476030e-02	ci right 3.131851e-02	k: 279	n:10000
KS ci ratio: 2.109753e-02	ci left: 7.670911e-01	ci right 7.835482e-01	k: 7754	n:10000
ABO   10000 perm   1 sec   (7535 perm/sec)   p_kst 7.754000e-01   p_cons 2.790000e-02   p_joint 6.500000e-02

Joint ci ratio: 5.766221e-02	ci left: 1.822597e-01	ci right 1.931313e-01	k: 3753	n:20000
Cons ci ratio: 1.649854e-01	ci left: 2.518148e-02	ci right 2.975729e-02	k: 548	n:20000
KS ci ratio: 1.515135e-02	ci left: 7.640532e-01	ci right 7.757682e-01	k: 15399	n:20000
ABO   20000 perm   3 sec   (6645 perm/sec)   p_kst 7.699500e-01   p_cons 2.740000e-02   p_joint 1.876500e-01

Joint ci ratio: 6.029242e-02	ci left: 1.197640e-01	ci right 1.272424e-01	k: 3704	n:30000
Cons ci ratio: 1.345013e-01	ci left: 2.567866e-02	ci right 2.941359e-02	k: 825	n:30000
KS ci ratio: 1.243095e-02	ci left: 7.634160e-01	ci right 7.729987e-01	k: 23047	n:30000
ABO   30000 perm   5 sec   (6299 perm/sec)   p_kst 7.682333e-01   p_cons 2.750000e-02   p_joint 1.234667e-01

Joint ci ratio: 6.423394e-02	ci left: 8.243251e-02	ci right 8.792789e-02	k: 3406	n:40000
Cons ci ratio: 1.178274e-01	ci left: 2.533639e-02	ci right 2.853278e-02	k: 1076	n:40000
KS ci ratio: 1.073327e-02	ci left: 7.651396e-01	ci right 7.734213e-01	k: 30772	n:40000
ABO   40000 perm   7 sec   (6057 perm/sec)   p_kst 7.693000e-01   p_cons 2.690000e-02   p_joint 8.515000e-02

Joint ci ratio: 7.102721e-02	ci left: 5.537690e-02	ci right 5.947467e-02	k: 2870	n:50000
Cons ci ratio: 1.063770e-01	ci left: 2.503177e-02	ci right 2.786357e-02	k: 1321	n:50000
KS ci ratio: 9.584444e-03	ci left: 7.661650e-01	ci right 7.735636e-01	k: 38494	n:50000
ABO   50000 perm   9 sec   (5798 perm/sec)   p_kst 7.698800e-01   p_cons 2.642000e-02   p_joint 5.740000e-02

Joint ci ratio: 6.893785e-02	ci left: 4.936786e-02	ci right 5.290905e-02	k: 3067	n:60000
Cons ci ratio: 9.705833e-02	ci left: 2.518061e-02	ci right 2.776547e-02	k: 1587	n:60000
KS ci ratio: 8.727876e-03	ci left: 7.673652e-01	ci right 7.741086e-01	k: 46245	n:60000
ABO   60000 perm   11 sec   (5690 perm/sec)   p_kst 7.707500e-01   p_cons 2.645000e-02   p_joint 5.111667e-02

Outputting figure to mutsig2_images.part000000000002/ABO.2_1092_60000_0.77075_0.02645_0.051117.png
                gene_name: ABO
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.053 

Current progress: 72 percent done.
ABTB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.895191e-02	ci left: 4.932507e-01	ci right 5.129475e-01	k: 5031	n:10000
Cons ci ratio: 9.251487e-02	ci left: 1.451135e-01	ci right 1.592898e-01	k: 1521	n:10000
KS ci ratio: 3.247861e-02	ci left: 5.831949e-01	ci right 6.025510e-01	k: 5929	n:10000
ABTB1   10000 perm   1 sec   (7428 perm/sec)   p_kst 5.929000e-01   p_cons 1.521000e-01   p_joint 5.031000e-01

Outputting figure to mutsig2_images.part000000000002/ABTB1.2_1485_10000_0.5929_0.1521_0.5031.png
                gene_name: ABTB1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 73 percent done.
ACAA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.634652e-02	ci left: 8.447858e-01	ci right 8.588086e-01	k: 8519	n:10000
Cons ci ratio: 2.744677e-02	ci left: 6.616923e-01	ci right 6.802080e-01	k: 6710	n:10000
KS ci ratio: 3.127486e-02	ci left: 6.013635e-01	ci right 6.205718e-01	k: 6110	n:10000
ACAA1   10000 perm   1 sec   (7555 perm/sec)   p_kst 6.110000e-01   p_cons 6.710000e-01   p_joint 8.519000e-01

Outputting figure to mutsig2_images.part000000000002/ACAA1.2_1323_10000_0.611_0.671_0.8519.png
                gene_name: ACAA1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 75 percent done.
ACADL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.948433e-02	ci left: 7.939508e-01	ci right 8.096730e-01	k: 8019	n:10000
KS ci ratio: 3.005121e-02	ci left: 6.202494e-01	ci right 6.392749e-01	k: 6298	n:10000
ACADL   10000 perm   1 sec   (7649 perm/sec)   p_kst 6.298000e-01   p_cons 8.019000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACADL.2_1337_10000_0.6298_0.8019_1.png
                gene_name: ACADL
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
ACAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.272679e-02	ci left: 8.987765e-01	ci right 9.103866e-01	k: 9047	n:10000
KS ci ratio: 8.652199e-02	ci left: 1.628811e-01	ci right 1.777115e-01	k: 1702	n:10000
ACAT2   10000 perm   1 sec   (7871 perm/sec)   p_kst 1.702000e-01   p_cons 9.047000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000002/ACAT2.2_1230_10000_0.1702_0.9047_1.png
                gene_name: ACAT2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
ACBD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.781424e-02	ci left: 6.557528e-01	ci right 6.743510e-01	k: 6651	n:10000
Cons ci ratio: 2.585051e-02	ci left: 6.877856e-01	ci right 7.058996e-01	k: 6969	n:10000
KS ci ratio: 5.612182e-02	ci left: 3.186009e-01	ci right 3.370994e-01	k: 3278	n:10000
ACBD5   10000 perm   1 sec   (7237 perm/sec)   p_kst 3.278000e-01   p_cons 6.969000e-01   p_joint 6.651000e-01

Outputting figure to mutsig2_images.part000000000002/ACBD5.2_1630_10000_0.3278_0.6969_0.6651.png
                gene_name: ACBD5
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 79 percent done.
ACBD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.865273e-02	ci left: 8.076544e-01	ci right 8.229615e-01	k: 8154	n:10000
Cons ci ratio: 5.444600e-02	ci left: 3.320042e-01	ci right 3.506883e-01	k: 3413	n:10000
KS ci ratio: 4.135393e-02	ci left: 4.633733e-01	ci right 4.830423e-01	k: 4732	n:10000
ACBD6   10000 perm   1 sec   (7458 perm/sec)   p_kst 4.732000e-01   p_cons 3.413000e-01   p_joint 8.154000e-01

Outputting figure to mutsig2_images.part000000000002/ACBD6.2_881_10000_0.4732_0.3413_0.8154.png
                gene_name: ACBD6
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 81 percent done.
ACCN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.422642e-02	ci left: 7.147204e-01	ci right 7.323492e-01	k: 7236	n:10000
Cons ci ratio: 2.416588e-02	ci left: 7.157300e-01	ci right 7.333390e-01	k: 7246	n:10000
KS ci ratio: 8.335471e-02	ci left: 1.734975e-01	ci right 1.886888e-01	k: 1810	n:10000
ACCN4   10000 perm   1 sec   (7025 perm/sec)   p_kst 1.810000e-01   p_cons 7.246000e-01   p_joint 7.236000e-01

Outputting figure to mutsig2_images.part000000000002/ACCN4.2_2041_10000_0.181_0.7246_0.7236.png
                gene_name: ACCN4
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 82 percent done.
ACE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.024951e-01	ci left: 1.210221e-01	ci right 1.341957e-01	k: 1275	n:10000
Cons ci ratio: 1.249484e-01	ci left: 8.397514e-02	ci right 9.526525e-02	k: 895	n:10000
KS ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
ACE   10000 perm   2 sec   (6117 perm/sec)   p_kst 8.370000e-02   p_cons 8.950000e-02   p_joint 1.275000e-01

Joint ci ratio: 1.329584e-01	ci left: 3.887454e-02	ci right 4.445971e-02	k: 832	n:20000
Cons ci ratio: 8.773658e-02	ci left: 8.675464e-02	ci right 9.476480e-02	k: 1814	n:20000
KS ci ratio: 9.237437e-02	ci left: 7.877186e-02	ci right 8.645000e-02	k: 1651	n:20000
ACE   20000 perm   4 sec   (5496 perm/sec)   p_kst 8.255000e-02   p_cons 9.070000e-02   p_joint 4.160000e-02

Joint ci ratio: 5.020934e-02	ci left: 1.646099e-01	ci right 1.731210e-01	k: 5065	n:30000
Cons ci ratio: 7.154321e-02	ci left: 8.770292e-02	ci right 9.424321e-02	k: 2728	n:30000
KS ci ratio: 7.564036e-02	ci left: 7.905027e-02	ci right 8.529760e-02	k: 2464	n:30000
ACE   30000 perm   6 sec   (5249 perm/sec)   p_kst 8.213333e-02   p_cons 9.093333e-02   p_joint 1.688333e-01

Outputting figure to mutsig2_images.part000000000002/ACE.2_4224_30000_0.082133_0.090933_0.16883.png
                gene_name: ACE
               theta_stop: 0.076 
                    nperm: 30000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 84 percent done.
ACHE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.452330e-02	ci left: 7.097745e-01	ci right 7.274979e-01	k: 7187	n:10000
Cons ci ratio: 7.397016e-03	ci left: 9.619446e-01	ci right 9.691809e-01	k: 9657	n:10000
KS ci ratio: 1.178575e-01	ci left: 9.370045e-02	ci right 1.055340e-01	k: 995	n:10000
ACHE   10000 perm   2 sec   (6524 perm/sec)   p_kst 9.950000e-02   p_cons 9.657000e-01   p_joint 7.187000e-01

Joint ci ratio: 2.195332e-02	ci left: 6.077134e-01	ci right 6.212533e-01	k: 12290	n:20000
Cons ci ratio: 5.127897e-03	ci left: 9.643786e-01	ci right 9.693845e-01	k: 19339	n:20000
KS ci ratio: 8.249123e-02	ci left: 9.724970e-02	ci right 1.056666e-01	k: 2028	n:20000
ACHE   20000 perm   3 sec   (5817 perm/sec)   p_kst 1.014000e-01   p_cons 9.669500e-01   p_joint 6.145000e-01

Outputting figure to mutsig2_images.part000000000002/ACHE.2_1996_20000_0.1014_0.96695_0.6145.png
                gene_name: ACHE
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.62 

Current progress: 85 percent done.
ACO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.735700e-02	ci left: 3.968515e-01	ci right 4.162030e-01	k: 4065	n:10000
Cons ci ratio: 1.557477e-02	ci left: 8.568193e-01	ci right 8.703681e-01	k: 8637	n:10000
KS ci ratio: 7.372364e-02	ci left: 2.122093e-01	ci right 2.285539e-01	k: 2203	n:10000
ACO2   10000 perm   2 sec   (6509 perm/sec)   p_kst 2.203000e-01   p_cons 8.637000e-01   p_joint 4.065000e-01

Outputting figure to mutsig2_images.part000000000002/ACO2.2_2415_10000_0.2203_0.8637_0.4065.png
                gene_name: ACO2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 87 percent done.
ACOT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.958900e-02	ci left: 6.274864e-01	ci right 6.464337e-01	k: 6370	n:10000
Cons ci ratio: 1.707822e-02	ci left: 8.331748e-01	ci right 8.476263e-01	k: 8405	n:10000
KS ci ratio: 9.526235e-02	ci left: 1.378591e-01	ci right 1.517485e-01	k: 1447	n:10000
ACOT6   10000 perm   1 sec   (7375 perm/sec)   p_kst 1.447000e-01   p_cons 8.405000e-01   p_joint 6.370000e-01

Outputting figure to mutsig2_images.part000000000002/ACOT6.2_632_10000_0.1447_0.8405_0.637.png
                gene_name: ACOT6
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 88 percent done.
ACOT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.893690e-02	ci left: 2.975703e-01	ci right 3.157424e-01	k: 3066	n:10000
Cons ci ratio: 6.323539e-02	ci left: 2.687398e-01	ci right 2.863900e-01	k: 2775	n:10000
KS ci ratio: 8.729533e-02	ci left: 1.604251e-01	ci right 1.751689e-01	k: 1677	n:10000
ACOT7   10000 perm   1 sec   (7176 perm/sec)   p_kst 1.677000e-01   p_cons 2.775000e-01   p_joint 3.066000e-01

Outputting figure to mutsig2_images.part000000000002/ACOT7.2_1437_10000_0.1677_0.2775_0.3066.png
                gene_name: ACOT7
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 90 percent done.
ACOT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
Cons ci ratio: 9.846546e-02	ci left: 1.300234e-01	ci right 1.435889e-01	k: 1367	n:10000
KS ci ratio: 2.098973e-01	ci left: 3.015459e-02	ci right 3.732038e-02	k: 336	n:10000
ACOT9   10000 perm   2 sec   (6662 perm/sec)   p_kst 3.360000e-02   p_cons 1.367000e-01   p_joint 4.660000e-02

Joint ci ratio: 1.480826e-01	ci left: 3.133844e-02	ci right 3.639826e-02	k: 676	n:20000
Cons ci ratio: 6.864177e-02	ci left: 1.353665e-01	ci right 1.450384e-01	k: 2803	n:20000
KS ci ratio: 1.507536e-01	ci left: 3.023012e-02	ci right 3.520695e-02	k: 653	n:20000
ACOT9   20000 perm   3 sec   (6091 perm/sec)   p_kst 3.265000e-02   p_cons 1.401500e-01   p_joint 3.380000e-02

Joint ci ratio: 1.284692e-01	ci left: 2.816320e-02	ci right 3.206184e-02	k: 902	n:30000
Cons ci ratio: 5.612370e-02	ci left: 1.359272e-01	ci right 1.438094e-01	k: 4195	n:30000
KS ci ratio: 1.228321e-01	ci left: 3.081318e-02	ci right 3.487795e-02	k: 984	n:30000
ACOT9   30000 perm   5 sec   (5794 perm/sec)   p_kst 3.280000e-02   p_cons 1.398333e-01   p_joint 3.006667e-02

Joint ci ratio: 1.384395e-01	ci left: 1.828815e-02	ci right 2.103221e-02	k: 785	n:40000
Cons ci ratio: 4.876017e-02	ci left: 1.356978e-01	ci right 1.425047e-01	k: 5563	n:40000
KS ci ratio: 1.084127e-01	ci left: 2.993160e-02	ci right 3.338683e-02	k: 1265	n:40000
ACOT9   40000 perm   7 sec   (5627 perm/sec)   p_kst 3.162500e-02   p_cons 1.390750e-01   p_joint 1.962500e-02

Joint ci ratio: 7.294721e-02	ci left: 5.260481e-02	ci right 5.660710e-02	k: 2729	n:50000
Cons ci ratio: 4.357975e-02	ci left: 1.362363e-01	ci right 1.423256e-01	k: 6963	n:50000
KS ci ratio: 9.749364e-02	ci left: 2.979099e-02	ci right 3.286374e-02	k: 1565	n:50000
ACOT9   50000 perm   9 sec   (5559 perm/sec)   p_kst 3.130000e-02   p_cons 1.392600e-01   p_joint 5.458000e-02

Outputting figure to mutsig2_images.part000000000002/ACOT9.2_1411_50000_0.0313_0.13926_0.05458.png
                gene_name: ACOT9
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 91 percent done.
ACOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.584290e-03	ci left: 9.772755e-01	ci right 9.828399e-01	k: 9802	n:10000
Cons ci ratio: 2.634893e-03	ci left: 9.940977e-01	ci right 9.968012e-01	k: 9956	n:10000
KS ci ratio: 2.228785e-02	ci left: 7.471549e-01	ci right 7.640960e-01	k: 7557	n:10000
ACOX2   10000 perm   1 sec   (7063 perm/sec)   p_kst 7.557000e-01   p_cons 9.956000e-01   p_joint 9.802000e-01

Outputting figure to mutsig2_images.part000000000002/ACOX2.2_2102_10000_0.7557_0.9956_0.9802.png
                gene_name: ACOX2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 93 percent done.
ACOXL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
Cons ci ratio: 1.264263e-01	ci left: 8.212963e-02	ci right 9.331191e-02	k: 876	n:10000
KS ci ratio: 9.495584e-02	ci left: 1.386431e-01	ci right 1.525641e-01	k: 1455	n:10000
ACOXL   10000 perm   1 sec   (7411 perm/sec)   p_kst 1.455000e-01   p_cons 8.760000e-02   p_joint 5.500000e-02

Joint ci ratio: 1.223076e-01	ci left: 4.585485e-02	ci right 5.187718e-02	k: 976	n:20000
Cons ci ratio: 8.868017e-02	ci left: 8.503968e-02	ci right 9.298028e-02	k: 1779	n:20000
KS ci ratio: 6.714503e-02	ci left: 1.406893e-01	ci right 1.505140e-01	k: 2911	n:20000
ACOXL   20000 perm   3 sec   (6594 perm/sec)   p_kst 1.455500e-01   p_cons 8.895000e-02   p_joint 4.880000e-02

Joint ci ratio: 8.416313e-02	ci left: 6.458829e-02	ci right 7.029583e-02	k: 2022	n:30000
Cons ci ratio: 7.209675e-02	ci left: 8.645686e-02	ci right 9.295618e-02	k: 2690	n:30000
KS ci ratio: 5.477263e-02	ci left: 1.418243e-01	ci right 1.498444e-01	k: 4374	n:30000
ACOXL   30000 perm   5 sec   (6269 perm/sec)   p_kst 1.458000e-01   p_cons 8.966667e-02   p_joint 6.740000e-02

Outputting figure to mutsig2_images.part000000000002/ACOXL.2_1811_30000_0.1458_0.089667_0.0674.png
                gene_name: ACOXL
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.070 

Current progress: 94 percent done.
ACP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.957877e-03	ci left: 9.564959e-01	ci right 9.642330e-01	k: 9605	n:10000
Cons ci ratio: 4.923248e-02	ci left: 3.783335e-01	ci right 3.975319e-01	k: 3879	n:10000
KS ci ratio: 1.008422e-02	ci left: 9.330945e-01	ci right 9.426485e-01	k: 9380	n:10000
ACP1   10000 perm   1 sec   (7802 perm/sec)   p_kst 9.380000e-01   p_cons 3.879000e-01   p_joint 9.605000e-01

Outputting figure to mutsig2_images.part000000000002/ACP1.2_656_10000_0.938_0.3879_0.9605.png
                gene_name: ACP1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 96 percent done.
ACP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.368008e-02	ci left: 3.383613e-01	ci right 3.571274e-01	k: 3477	n:10000
Cons ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
KS ci ratio: 3.239796e-02	ci left: 5.843990e-01	ci right 6.037461e-01	k: 5941	n:10000
ACP2   10000 perm   1 sec   (7209 perm/sec)   p_kst 5.941000e-01   p_cons 4.270000e-02   p_joint 3.477000e-01

Joint ci ratio: 1.011086e-01	ci left: 6.635513e-02	ci right 7.347052e-02	k: 1397	n:20000
Cons ci ratio: 1.328752e-01	ci left: 3.892294e-02	ci right 4.451129e-02	k: 833	n:20000
KS ci ratio: 2.307194e-02	ci left: 5.838477e-01	ci right 5.975260e-01	k: 11814	n:20000
ACP2   20000 perm   3 sec   (6323 perm/sec)   p_kst 5.907000e-01   p_cons 4.165000e-02   p_joint 6.985000e-02

Joint ci ratio: 2.991390e-02	ci left: 3.585521e-01	ci right 3.694742e-01	k: 10920	n:30000
Cons ci ratio: 1.022146e-01	ci left: 4.433973e-02	ci right 4.914854e-02	k: 1401	n:30000
KS ci ratio: 1.874257e-02	ci left: 5.875824e-01	ci right 5.987329e-01	k: 17795	n:30000
ACP2   30000 perm   5 sec   (5987 perm/sec)   p_kst 5.931667e-01   p_cons 4.670000e-02   p_joint 3.640000e-01

Joint ci ratio: 2.626289e-02	ci left: 3.530007e-01	ci right 3.624200e-01	k: 14308	n:40000
Cons ci ratio: 8.852901e-02	ci left: 4.465275e-02	ci right 4.881337e-02	k: 1868	n:40000
KS ci ratio: 1.618606e-02	ci left: 5.896942e-01	ci right 5.993420e-01	k: 23781	n:40000
ACP2   40000 perm   7 sec   (5839 perm/sec)   p_kst 5.945250e-01   p_cons 4.670000e-02   p_joint 3.577000e-01

Outputting figure to mutsig2_images.part000000000002/ACP2.2_1349_40000_0.59452_0.0467_0.3577.png
                gene_name: ACP2
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 97 percent done.
ACR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.350465e-02	ci left: 5.680480e-01	ci right 5.875066e-01	k: 5778	n:10000
Cons ci ratio: 4.854499e-02	ci left: 3.850022e-01	ci right 4.042592e-01	k: 3946	n:10000
KS ci ratio: 4.215870e-02	ci left: 4.537880e-01	ci right 4.734332e-01	k: 4636	n:10000
ACR   10000 perm   1 sec   (7467 perm/sec)   p_kst 4.636000e-01   p_cons 3.946000e-01   p_joint 5.778000e-01

Outputting figure to mutsig2_images.part000000000002/ACR.2_1286_10000_0.4636_0.3946_0.5778.png
                gene_name: ACR
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 99 percent done.
ACRV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.993693e-02	ci left: 7.864452e-01	ci right 8.023829e-01	k: 7945	n:10000
Cons ci ratio: 4.971267e-02	ci left: 3.737560e-01	ci right 3.929120e-01	k: 3833	n:10000
KS ci ratio: 3.274838e-02	ci left: 5.791816e-01	ci right 5.985666e-01	k: 5889	n:10000
ACRV1   10000 perm   1 sec   (7618 perm/sec)   p_kst 5.889000e-01   p_cons 3.833000e-01   p_joint 7.945000e-01

Outputting figure to mutsig2_images.part000000000002/ACRV1.2_814_10000_0.5889_0.3833_0.7945.png
                gene_name: ACRV1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000002
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 2 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1537>
Subject: Job 9893795: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1537>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000003> was used as the working directory.
Started at Fri Oct  5 23:51:06 2012
Results reported at Sat Oct  6 03:32:57 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000003.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000003.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 3  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000003.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  14109.34 sec.
    Max Memory :      3570 MB
    Max Swap   :      5944 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
3
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 3
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 3: processing genes 181 - 270
Calculating significance of each gene.
Using projection method.
181	ACSL6	8.049979e-02
182	ACSM1	4.839201e-01
183	ACSM2A	6.014736e-01
184	ACSM2B	5.332944e-01
185	ACSM3	9.306218e-01
186	ACSM4	5.064382e-01
187	ACSM5	2.037499e-01
188	ACSS1	8.578928e-01
189	ACSS2	8.407540e-02
In gene ACSS3 the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 1810    n = 1	mu =   7.59e-07
190	ACSS3	4.349420e-03
191	ACTA1	3.747054e-01
192	ACTA2	3.362278e-01
193	ACTB	5.481388e-01
194	ACTBL2	3.093932e-03
195	ACTC1	1
196	ACTG1	1
197	ACTG2	2.466005e-01
198	ACTL6A	1.065894e-01
199	ACTL6B	8.382908e-01
200	ACTL7A	4.226606e-01
201	ACTL7B	6.831878e-01
202	ACTL8	2.162878e-01
203	ACTL9	7.808228e-02
204	ACTN1	8.950026e-01
205	ACTN2	6.419804e-02
206	ACTN3	8.069051e-01
207	ACTN4	8.725984e-01
208	ACTR10	8.770092e-01
209	ACTR1A	5.341400e-01
210	ACTR1B	3.193656e-01
211	ACTR2	4.206323e-01
212	ACTR3	4.565580e-01
213	ACTR3B	8.792822e-01
214	ACTR5	7.264657e-01
215	ACTR6	8.113856e-01
216	ACTR8	7.687557e-01
217	ACTRT1	1.818325e-01
218	ACTRT2	8.434073e-01
219	ACVR1	3.478738e-01
In gene ACVR1B the following bins exceed PROBCAP:
    READ-AG-A01L	categ 6	N = 1544    n = 1	mu =   3.23e-07
220	ACVR1B	7.971937e-08
221	ACVR1C	3.736739e-01
222	ACVR2A	1.616574e-04
223	ACVR2B	2.812200e-01
224	ACVRL1	2.288121e-01
225	ACY1	5.978084e-01
226	ACY3	1
227	ACYP1	4.173521e-02
228	ACYP2	1
229	ADA	4.277860e-01
230	ADAD1	7.956201e-02
In gene ADAD2 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 1762    n = 1	mu =   8.55e-07
231	ADAD2	8.519284e-01
232	ADAL	1
233	ADAM10	9.230992e-01
234	ADAM11	1.670042e-01
235	ADAM12	4.859108e-02
236	ADAM15	4.070084e-01
237	ADAM17	1.588318e-01
238	ADAM18	1.019169e-02
239	ADAM19	8.183312e-01
240	ADAM2	7.591594e-03
241	ADAM20	7.467942e-01
242	ADAM21	5.439190e-01
243	ADAM22	5.988629e-01
244	ADAM23	1.303984e-01
245	ADAM28	3.347324e-01
246	ADAM29	5.022018e-06
247	ADAM30	2.385828e-01
248	ADAM32	7.774580e-02
249	ADAM33	5.512970e-01
250	ADAM7	3.618820e-03
251	ADAM8	9.198430e-01
252	ADAM9	8.232676e-01
253	ADAMDEC1	1.985551e-01
254	ADAMTS1	6.256685e-01
255	ADAMTS10	7.124068e-01
256	ADAMTS12	3.187585e-04
257	ADAMTS13	9.734847e-01
258	ADAMTS14	2.124798e-01
259	ADAMTS15	9.380461e-01
260	ADAMTS16	1.146725e-02
261	ADAMTS17	1.317156e-01
262	ADAMTS18	4.643791e-02
263	ADAMTS19	2.355443e-01
264	ADAMTS2	1.987114e-01
In gene ADAMTS20 the following bins exceed PROBCAP:
    COAD-AA-A01Z	categ 6	N = 5849    n = 1	mu =   3.62e-07
265	ADAMTS20	1.275039e-01
266	ADAMTS3	9.173796e-02
267	ADAMTS4	6.576819e-01
268	ADAMTS5	1.683392e-03
269	ADAMTS6	5.511365e-01
270	ADAMTS7	1
Done

Running MutSig 2:
Scatter job 3: processing genes 181 - 270
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ADAMTS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.217355e-02	ci left: 9.063796e-01	ci right 9.175790e-01	k: 9121	n:10000
Cons ci ratio: 3.179695e-02	ci left: 5.934319e-01	ci right 6.127080e-01	k: 6031	n:10000
KS ci ratio: 1.596265e-02	ci left: 8.508006e-01	ci right 8.645904e-01	k: 8578	n:10000
ADAMTS12   10000 perm   3 sec   (3360 perm/sec)   p_kst 8.578000e-01   p_cons 6.031000e-01   p_joint 9.121000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS12.24_4881_10000_0.8578_0.6031_0.9121.png
                gene_name: ADAMTS12
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 1 percent done.
ACVR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
KS ci ratio: 1.621688e-01	ci left: 5.070795e-02	ci right 5.975335e-02	k: 551	n:10000
ACVR1B   10000 perm   2 sec   (4676 perm/sec)   p_kst 5.510000e-02   p_cons 2.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KS ci ratio: 1.167009e-01	ci left: 5.027556e-02	ci right 5.655507e-02	k: 1067	n:20000
ACVR1B   20000 perm   5 sec   (4194 perm/sec)   p_kst 5.335000e-02   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.973651e-01	ci left: 2.592756e-03	ci right 3.906364e-03	k: 96	n:30000
Cons ci ratio: 1.752902e+00	ci left: 3.633000e-05	ci right 3.413508e-04	k: 4	n:30000
KS ci ratio: 9.566566e-02	ci left: 5.045901e-02	ci right 5.556133e-02	k: 1589	n:30000
ACVR1B   30000 perm   7 sec   (4036 perm/sec)   p_kst 5.296667e-02   p_cons 1.333333e-04   p_joint 3.200000e-03

Joint ci ratio: 4.351089e-01	ci left: 1.586184e-03	ci right 2.488564e-03	k: 80	n:40000
Cons ci ratio: 1.481473e+00	ci left: 5.504928e-05	ci right 3.264580e-04	k: 6	n:40000
KS ci ratio: 8.379247e-02	ci left: 4.969724e-02	ci right 5.406811e-02	k: 2074	n:40000
ACVR1B   40000 perm   10 sec   (3928 perm/sec)   p_kst 5.185000e-02   p_cons 1.500000e-04   p_joint 2.000000e-03

Joint ci ratio: 3.976255e-01	ci left: 1.555474e-03	ci right 2.344151e-03	k: 96	n:50000
Cons ci ratio: 1.306536e+00	ci left: 6.907909e-05	ci right 3.152393e-04	k: 8	n:50000
KS ci ratio: 7.517213e-02	ci left: 4.963776e-02	ci right 5.353451e-02	k: 2578	n:50000
ACVR1B   50000 perm   13 sec   (3810 perm/sec)   p_kst 5.156000e-02   p_cons 1.600000e-04   p_joint 1.920000e-03

Joint ci ratio: 3.976905e-01	ci left: 1.296191e-03	ci right 1.953528e-03	k: 96	n:60000
Cons ci ratio: 1.181806e+00	ci left: 7.992595e-05	ci right 3.064845e-04	k: 10	n:60000
KS ci ratio: 6.853854e-02	ci left: 4.992529e-02	ci right 5.348490e-02	k: 3101	n:60000
ACVR1B   60000 perm   16 sec   (3735 perm/sec)   p_kst 5.168333e-02   p_cons 1.666667e-04   p_joint 1.600000e-03

Joint ci ratio: 3.652389e-01	ci left: 1.343553e-03	ci right 1.956091e-03	k: 114	n:70000
Cons ci ratio: 1.087104e+00	ci left: 8.858268e-05	ci right 2.994320e-04	k: 12	n:70000
KS ci ratio: 6.349143e-02	ci left: 5.000083e-02	ci right 5.329360e-02	k: 3614	n:70000
ACVR1B   70000 perm   19 sec   (3668 perm/sec)   p_kst 5.162857e-02   p_cons 1.714286e-04   p_joint 1.628571e-03

Joint ci ratio: 3.560918e-01	ci left: 1.243801e-03	ci right 1.793369e-03	k: 120	n:80000
Cons ci ratio: 9.798959e-01	ci left: 1.049460e-04	ci right 3.092339e-04	k: 15	n:80000
KS ci ratio: 5.904078e-02	ci left: 5.068100e-02	ci right 5.377657e-02	k: 4177	n:80000
ACVR1B   80000 perm   22 sec   (3589 perm/sec)   p_kst 5.221250e-02   p_cons 1.875000e-04   p_joint 1.500000e-03

Joint ci ratio: 3.937559e-01	ci left: 8.840983e-04	ci right 1.326849e-03	k: 98	n:90000
Cons ci ratio: 9.506446e-01	ci left: 1.016187e-04	ci right 2.886840e-04	k: 16	n:90000
KS ci ratio: 5.564080e-02	ci left: 5.081054e-02	ci right 5.372952e-02	k: 4703	n:90000
ACVR1B   90000 perm   26 sec   (3507 perm/sec)   p_kst 5.225556e-02   p_cons 1.777778e-04   p_joint 1.088889e-03

Joint ci ratio: 3.918020e-01	ci left: 8.046937e-04	ci right 1.205160e-03	k: 99	n:100000
Cons ci ratio: 9.238651e-01	ci left: 9.903428e-05	ci right 2.721726e-04	k: 17	n:100000
KS ci ratio: 5.271992e-02	ci left: 5.100714e-02	ci right 5.377889e-02	k: 5238	n:100000
ACVR1B   100000 perm   29 sec   (3439 perm/sec)   p_kst 5.238000e-02   p_cons 1.700000e-04   p_joint 9.900000e-04

Joint ci ratio: 3.637693e-01	ci left: 8.632047e-04	ci right 1.254778e-03	k: 115	n:110000
Cons ci ratio: 8.764550e-01	ci left: 1.039962e-04	ci right 2.697219e-04	k: 19	n:110000
KS ci ratio: 5.036757e-02	ci left: 5.087486e-02	ci right 5.351245e-02	k: 5740	n:110000
ACVR1B   110000 perm   32 sec   (3385 perm/sec)   p_kst 5.218182e-02   p_cons 1.727273e-04   p_joint 1.045455e-03

Joint ci ratio: 4.495106e-01	ci left: 4.916329e-04	ci right 7.833808e-04	k: 75	n:120000
Cons ci ratio: 8.000833e-01	ci left: 1.215040e-04	ci right 2.875803e-04	k: 23	n:120000
KS ci ratio: 4.818640e-02	ci left: 5.100584e-02	ci right 5.353252e-02	k: 6271	n:120000
ACVR1B   120000 perm   36 sec   (3338 perm/sec)   p_kst 5.225833e-02   p_cons 1.916667e-04   p_joint 6.250000e-04

Joint ci ratio: 4.437177e-01	ci left: 4.674674e-04	ci right 7.402282e-04	k: 77	n:130000
Cons ci ratio: 7.839216e-01	ci left: 1.182900e-04	ci right 2.746807e-04	k: 24	n:130000
KS ci ratio: 4.624815e-02	ci left: 5.115680e-02	ci right 5.358629e-02	k: 6807	n:130000
ACVR1B   130000 perm   40 sec   (3291 perm/sec)   p_kst 5.236154e-02   p_cons 1.846154e-04   p_joint 5.923077e-04

Joint ci ratio: 4.327632e-01	ci left: 4.594950e-04	ci right 7.190609e-04	k: 81	n:140000
Cons ci ratio: 7.839272e-01	ci left: 1.098405e-04	ci right 2.550615e-04	k: 24	n:140000
KS ci ratio: 4.453282e-02	ci left: 5.127380e-02	ci right 5.361621e-02	k: 7341	n:140000
ACVR1B   140000 perm   43 sec   (3242 perm/sec)   p_kst 5.243571e-02   p_cons 1.714286e-04   p_joint 5.785714e-04

Joint ci ratio: 4.250618e-01	ci left: 4.467018e-04	ci right 6.932719e-04	k: 84	n:150000
Cons ci ratio: 7.687061e-01	ci left: 1.078607e-04	ci right 2.460231e-04	k: 25	n:150000
KS ci ratio: 4.290043e-02	ci left: 5.159441e-02	ci right 5.386292e-02	k: 7908	n:150000
ACVR1B   150000 perm   47 sec   (3192 perm/sec)   p_kst 5.272000e-02   p_cons 1.666667e-04   p_joint 5.600000e-04

Joint ci ratio: 4.108095e-01	ci left: 4.523399e-04	ci right 6.913634e-04	k: 90	n:160000
Cons ci ratio: 6.928932e-01	ci left: 1.316474e-04	ci right 2.750015e-04	k: 31	n:160000
KS ci ratio: 4.149993e-02	ci left: 5.172158e-02	ci right 5.391966e-02	k: 8450	n:160000
ACVR1B   160000 perm   51 sec   (3149 perm/sec)   p_kst 5.281250e-02   p_cons 1.937500e-04   p_joint 5.625000e-04

Joint ci ratio: 3.622783e-01	ci left: 5.638732e-04	ci right 8.183617e-04	k: 116	n:170000
Cons ci ratio: 7.407472e-01	ci left: 1.046682e-04	ci right 2.310715e-04	k: 27	n:170000
KS ci ratio: 4.019753e-02	ci left: 5.191059e-02	ci right 5.404587e-02	k: 9005	n:170000
ACVR1B   170000 perm   55 sec   (3105 perm/sec)   p_kst 5.297059e-02   p_cons 1.588235e-04   p_joint 6.823529e-04

Joint ci ratio: 3.702889e-01	ci left: 5.073226e-04	ci right 7.425790e-04	k: 111	n:180000
Cons ci ratio: 7.156292e-01	ci left: 1.079012e-04	ci right 2.313743e-04	k: 29	n:180000
KS ci ratio: 3.910997e-02	ci left: 5.182635e-02	ci right 5.389919e-02	k: 9514	n:180000
ACVR1B   180000 perm   59 sec   (3058 perm/sec)   p_kst 5.285556e-02   p_cons 1.611111e-04   p_joint 6.166667e-04

Joint ci ratio: 3.562492e-01	ci left: 5.236686e-04	ci right 7.551669e-04	k: 120	n:190000
Cons ci ratio: 7.039935e-01	ci left: 1.065334e-04	ci right 2.253969e-04	k: 30	n:190000
KS ci ratio: 3.803011e-02	ci left: 5.194989e-02	ci right 5.396904e-02	k: 10061	n:190000
ACVR1B   190000 perm   63 sec   (3017 perm/sec)   p_kst 5.295263e-02   p_cons 1.578947e-04   p_joint 6.315789e-04

Joint ci ratio: 3.477324e-01	ci left: 5.248331e-04	ci right 7.500502e-04	k: 126	n:200000
Cons ci ratio: 6.722156e-01	ci left: 1.135810e-04	ci right 2.317136e-04	k: 33	n:200000
KS ci ratio: 3.717771e-02	ci left: 5.168016e-02	ci right 5.364283e-02	k: 10531	n:200000
ACVR1B   200000 perm   67 sec   (2976 perm/sec)   p_kst 5.265500e-02   p_cons 1.650000e-04   p_joint 6.300000e-04

Joint ci ratio: 3.385276e-01	ci left: 5.303028e-04	ci right 7.505276e-04	k: 133	n:210000
Cons ci ratio: 6.625441e-01	ci left: 1.121263e-04	ci right 2.262384e-04	k: 34	n:210000
KS ci ratio: 3.633831e-02	ci left: 5.154989e-02	ci right 5.346249e-02	k: 11025	n:210000
ACVR1B   210000 perm   71 sec   (2939 perm/sec)   p_kst 5.250000e-02   p_cons 1.619048e-04   p_joint 6.333333e-04

Joint ci ratio: 3.385325e-01	ci left: 5.061970e-04	ci right 7.164146e-04	k: 133	n:220000
Cons ci ratio: 6.532784e-01	ci left: 1.108151e-04	ci right 2.212501e-04	k: 35	n:220000
KS ci ratio: 3.551752e-02	ci left: 5.153108e-02	ci right 5.339891e-02	k: 11541	n:220000
ACVR1B   220000 perm   76 sec   (2903 perm/sec)   p_kst 5.245909e-02   p_cons 1.590909e-04   p_joint 6.045455e-04

Joint ci ratio: 3.398081e-01	ci left: 4.802098e-04	ci right 6.805513e-04	k: 132	n:230000
Cons ci ratio: 6.532808e-01	ci left: 1.059969e-04	ci right 2.116308e-04	k: 35	n:230000
KS ci ratio: 3.470441e-02	ci left: 5.164372e-02	ci right 5.347192e-02	k: 12087	n:230000
ACVR1B   230000 perm   80 sec   (2867 perm/sec)   p_kst 5.255217e-02   p_cons 1.521739e-04   p_joint 5.739130e-04

Joint ci ratio: 3.450433e-01	ci left: 4.449660e-04	ci right 6.341031e-04	k: 128	n:240000
Cons ci ratio: 6.443930e-01	ci left: 1.050603e-04	ci right 2.076572e-04	k: 36	n:240000
KS ci ratio: 3.393053e-02	ci left: 5.178875e-02	ci right 5.358040e-02	k: 12643	n:240000
ACVR1B   240000 perm   85 sec   (2832 perm/sec)   p_kst 5.267917e-02   p_cons 1.500000e-04   p_joint 5.333333e-04

Joint ci ratio: 3.519384e-01	ci left: 4.089163e-04	ci right 5.869978e-04	k: 123	n:250000
Cons ci ratio: 6.358584e-01	ci left: 1.042077e-04	ci right 2.039928e-04	k: 37	n:250000
KS ci ratio: 3.322614e-02	ci left: 5.186306e-02	ci right 5.361933e-02	k: 13184	n:250000
ACVR1B   250000 perm   89 sec   (2796 perm/sec)   p_kst 5.273600e-02   p_cons 1.480000e-04   p_joint 4.920000e-04

Joint ci ratio: 3.491361e-01	ci left: 4.002034e-04	ci right 5.727885e-04	k: 125	n:260000
Cons ci ratio: 6.276541e-01	ci left: 1.034292e-04	ci right 2.006021e-04	k: 38	n:260000
KS ci ratio: 3.256762e-02	ci left: 5.192056e-02	ci right 5.364327e-02	k: 13722	n:260000
ACVR1B   260000 perm   94 sec   (2758 perm/sec)   p_kst 5.277692e-02   p_cons 1.461538e-04   p_joint 4.807692e-04

Joint ci ratio: 3.450537e-01	ci left: 3.955235e-04	ci right 5.636504e-04	k: 128	n:270000
Cons ci ratio: 6.276559e-01	ci left: 9.959839e-05	ci right 1.931726e-04	k: 38	n:270000
KS ci ratio: 3.194204e-02	ci left: 5.198882e-02	ci right 5.368005e-02	k: 14264	n:270000
ACVR1B   270000 perm   99 sec   (2721 perm/sec)   p_kst 5.282963e-02   p_cons 1.407407e-04   p_joint 4.740741e-04

Joint ci ratio: 3.437263e-01	ci left: 3.846598e-04	ci right 5.473998e-04	k: 129	n:280000
Cons ci ratio: 6.197610e-01	ci left: 9.904757e-05	ci right 1.904033e-04	k: 39	n:280000
KS ci ratio: 3.136572e-02	ci left: 5.200641e-02	ci right 5.366714e-02	k: 14793	n:280000
ACVR1B   280000 perm   104 sec   (2682 perm/sec)   p_kst 5.283214e-02   p_cons 1.392857e-04   p_joint 4.607143e-04

Joint ci ratio: 3.464053e-01	ci left: 3.650960e-04	ci right 5.210332e-04	k: 127	n:290000
Cons ci ratio: 6.121568e-01	ci left: 9.854172e-05	ci right 1.878182e-04	k: 40	n:290000
KS ci ratio: 3.084395e-02	ci left: 5.194432e-02	ci right 5.357498e-02	k: 15299	n:290000
ACVR1B   290000 perm   109 sec   (2649 perm/sec)   p_kst 5.275517e-02   p_cons 1.379310e-04   p_joint 4.379310e-04

Joint ci ratio: 3.450620e-01	ci left: 3.559698e-04	ci right 5.072876e-04	k: 128	n:300000
Cons ci ratio: 6.048258e-01	ci left: 9.807609e-05	ci right 1.853992e-04	k: 41	n:300000
KS ci ratio: 3.032815e-02	ci left: 5.194946e-02	ci right 5.355253e-02	k: 15824	n:300000
ACVR1B   300000 perm   115 sec   (2618 perm/sec)   p_kst 5.274667e-02   p_cons 1.366667e-04   p_joint 4.266667e-04

Joint ci ratio: 3.464102e-01	ci left: 3.415407e-04	ci right 4.874195e-04	k: 127	n:310000
Cons ci ratio: 5.977520e-01	ci left: 9.764655e-05	ci right 1.831305e-04	k: 42	n:310000
KS ci ratio: 2.984895e-02	ci left: 5.191604e-02	ci right 5.349234e-02	k: 16337	n:310000
ACVR1B   310000 perm   120 sec   (2583 perm/sec)   p_kst 5.270000e-02   p_cons 1.354839e-04   p_joint 4.096774e-04

Joint ci ratio: 3.623373e-01	ci left: 2.995497e-04	ci right 4.347685e-04	k: 116	n:320000
Cons ci ratio: 5.779300e-01	ci left: 1.025746e-04	ci right 1.881628e-04	k: 45	n:320000
KS ci ratio: 2.937981e-02	ci left: 5.192524e-02	ci right 5.347662e-02	k: 16863	n:320000
ACVR1B   320000 perm   125 sec   (2550 perm/sec)   p_kst 5.269687e-02   p_cons 1.406250e-04   p_joint 3.625000e-04

Joint ci ratio: 3.608002e-01	ci left: 2.932273e-04	ci right 4.248985e-04	k: 117	n:330000
Cons ci ratio: 5.599576e-01	ci left: 1.072486e-04	ci right 1.928471e-04	k: 48	n:330000
KS ci ratio: 2.891369e-02	ci left: 5.199727e-02	ci right 5.352575e-02	k: 17410	n:330000
ACVR1B   330000 perm   131 sec   (2524 perm/sec)   p_kst 5.275758e-02   p_cons 1.454545e-04   p_joint 3.545455e-04

Joint ci ratio: 3.623412e-01	ci left: 2.819287e-04	ci right 4.091948e-04	k: 116	n:340000
Cons ci ratio: 5.599588e-01	ci left: 1.040942e-04	ci right 1.871752e-04	k: 48	n:340000
KS ci ratio: 2.846991e-02	ci left: 5.206233e-02	ci right 5.356884e-02	k: 17956	n:340000
ACVR1B   340000 perm   136 sec   (2497 perm/sec)   p_kst 5.281176e-02   p_cons 1.411765e-04   p_joint 3.411765e-04

Joint ci ratio: 3.654813e-01	ci left: 2.686814e-04	ci right 3.912695e-04	k: 114	n:350000
Cons ci ratio: 5.599600e-01	ci left: 1.011200e-04	ci right 1.818275e-04	k: 48	n:350000
KS ci ratio: 2.804996e-02	ci left: 5.210964e-02	ci right 5.359492e-02	k: 18497	n:350000
ACVR1B   350000 perm   142 sec   (2471 perm/sec)   p_kst 5.284857e-02   p_cons 1.371429e-04   p_joint 3.257143e-04

Joint ci ratio: 3.608056e-01	ci left: 2.687910e-04	ci right 3.894914e-04	k: 117	n:360000
Cons ci ratio: 5.543324e-01	ci left: 1.006974e-04	ci right 1.799422e-04	k: 49	n:360000
KS ci ratio: 2.765496e-02	ci left: 5.212964e-02	ci right 5.359423e-02	k: 19029	n:360000
ACVR1B   360000 perm   147 sec   (2447 perm/sec)   p_kst 5.285833e-02   p_cons 1.361111e-04   p_joint 3.250000e-04

Joint ci ratio: 3.623463e-01	ci left: 2.590690e-04	ci right 3.760178e-04	k: 116	n:370000
Cons ci ratio: 5.488712e-01	ci left: 1.003015e-04	ci right 1.781550e-04	k: 50	n:370000
KS ci ratio: 2.728060e-02	ci left: 5.213259e-02	ci right 5.357713e-02	k: 19555	n:370000
ACVR1B   370000 perm   153 sec   (2422 perm/sec)   p_kst 5.285135e-02   p_cons 1.351351e-04   p_joint 3.135135e-04

Joint ci ratio: 3.737027e-01	ci left: 2.355329e-04	ci right 3.460067e-04	k: 109	n:380000
Cons ci ratio: 5.384152e-01	ci left: 1.022019e-04	ci right 1.794464e-04	k: 52	n:380000
KS ci ratio: 2.712054e-02	ci left: 5.140599e-02	ci right 5.282190e-02	k: 19802	n:380000
ACVR1B   380000 perm   158 sec   (2398 perm/sec)   p_kst 5.211053e-02   p_cons 1.368421e-04   p_joint 2.868421e-04

Joint ci ratio: 3.771495e-01	ci left: 2.248491e-04	ci right 3.315253e-04	k: 107	n:390000
Cons ci ratio: 5.334068e-01	ci left: 1.017981e-04	ci right 1.777535e-04	k: 53	n:390000
KS ci ratio: 2.675263e-02	ci left: 5.148103e-02	ci right 5.287948e-02	k: 20349	n:390000
ACVR1B   390000 perm   164 sec   (2374 perm/sec)   p_kst 5.217692e-02   p_cons 1.358974e-04   p_joint 2.743590e-04

Joint ci ratio: 2.125012e-01	ci left: 7.597062e-04	ci right 9.426491e-04	k: 339	n:400000
Cons ci ratio: 5.146833e-01	ci left: 1.079298e-04	ci right 1.846214e-04	k: 57	n:400000
KS ci ratio: 2.641330e-02	ci left: 5.150027e-02	ci right 5.288123e-02	k: 20875	n:400000
ACVR1B   400000 perm   170 sec   (2346 perm/sec)   p_kst 5.218750e-02   p_cons 1.425000e-04   p_joint 8.475000e-04

Joint ci ratio: 2.150506e-01	ci left: 7.227077e-04	ci right 8.991045e-04	k: 331	n:410000
Cons ci ratio: 5.146842e-01	ci left: 1.052974e-04	ci right 1.801185e-04	k: 57	n:410000
KS ci ratio: 2.609106e-02	ci left: 5.150171e-02	ci right 5.286561e-02	k: 21394	n:410000
ACVR1B   410000 perm   177 sec   (2322 perm/sec)   p_kst 5.218049e-02   p_cons 1.390244e-04   p_joint 8.073171e-04

Joint ci ratio: 2.190509e-01	ci left: 6.784802e-04	ci right 8.475775e-04	k: 319	n:420000
Cons ci ratio: 5.060331e-01	ci left: 1.069387e-04	ci right 1.812004e-04	k: 59	n:420000
KS ci ratio: 2.581080e-02	ci left: 5.138722e-02	ci right 5.273325e-02	k: 21864	n:420000
ACVR1B   420000 perm   183 sec   (2298 perm/sec)   p_kst 5.205714e-02   p_cons 1.404762e-04   p_joint 7.595238e-04

Joint ci ratio: 2.207858e-01	ci left: 6.517132e-04	ci right 8.156004e-04	k: 314	n:430000
Cons ci ratio: 5.018684e-01	ci left: 1.064815e-04	ci right 1.796055e-04	k: 60	n:430000
KS ci ratio: 2.553274e-02	ci left: 5.130356e-02	ci right 5.263271e-02	k: 22345	n:430000
ACVR1B   430000 perm   191 sec   (2252 perm/sec)   p_kst 5.196512e-02   p_cons 1.395349e-04   p_joint 7.302326e-04

Joint ci ratio: 2.163649e-01	ci left: 6.648302e-04	ci right 8.282237e-04	k: 327	n:440000
Cons ci ratio: 4.938377e-01	ci left: 1.080358e-04	ci right 1.806355e-04	k: 62	n:440000
KS ci ratio: 2.521051e-02	ci left: 5.142937e-02	ci right 5.274472e-02	k: 22917	n:440000
ACVR1B   440000 perm   198 sec   (2219 perm/sec)   p_kst 5.208409e-02   p_cons 1.409091e-04   p_joint 7.431818e-04

Joint ci ratio: 2.144130e-01	ci left: 6.626702e-04	ci right 8.238703e-04	k: 333	n:450000
Cons ci ratio: 4.861805e-01	ci left: 1.095301e-04	ci right 1.816110e-04	k: 64	n:450000
KS ci ratio: 2.493716e-02	ci left: 5.140388e-02	ci right 5.270412e-02	k: 23423	n:450000
ACVR1B   450000 perm   206 sec   (2188 perm/sec)   p_kst 5.205111e-02   p_cons 1.422222e-04   p_joint 7.400000e-04

Joint ci ratio: 2.122010e-01	ci left: 6.626688e-04	ci right 8.219892e-04	k: 340	n:460000
Cons ci ratio: 4.824835e-01	ci left: 1.090574e-04	ci right 1.801005e-04	k: 65	n:460000
KS ci ratio: 2.466382e-02	ci left: 5.141415e-02	ci right 5.270019e-02	k: 23945	n:460000
ACVR1B   460000 perm   212 sec   (2166 perm/sec)   p_kst 5.205435e-02   p_cons 1.413043e-04   p_joint 7.391304e-04

Joint ci ratio: 2.229275e-01	ci left: 5.841893e-04	ci right 7.327167e-04	k: 308	n:470000
Cons ci ratio: 4.824843e-01	ci left: 1.067369e-04	ci right 1.762686e-04	k: 65	n:470000
KS ci ratio: 2.438981e-02	ci left: 5.146214e-02	ci right 5.273488e-02	k: 24485	n:470000
ACVR1B   470000 perm   219 sec   (2144 perm/sec)   p_kst 5.209574e-02   p_cons 1.382979e-04   p_joint 6.553191e-04

Joint ci ratio: 2.211458e-01	ci left: 5.818560e-04	ci right 7.284469e-04	k: 313	n:480000
Cons ci ratio: 4.684950e-01	ci left: 1.118477e-04	ci right 1.819214e-04	k: 69	n:480000
KS ci ratio: 2.412983e-02	ci left: 5.148749e-02	ci right 5.274709e-02	k: 25015	n:480000
ACVR1B   480000 perm   226 sec   (2126 perm/sec)   p_kst 5.211458e-02   p_cons 1.437500e-04   p_joint 6.520833e-04

Joint ci ratio: 2.190629e-01	ci left: 5.815512e-04	ci right 7.264996e-04	k: 319	n:490000
Cons ci ratio: 4.619420e-01	ci left: 1.131682e-04	ci right 1.827656e-04	k: 71	n:490000
KS ci ratio: 2.387403e-02	ci left: 5.152810e-02	ci right 5.277516e-02	k: 25553	n:490000
ACVR1B   490000 perm   233 sec   (2107 perm/sec)   p_kst 5.214898e-02   p_cons 1.448980e-04   p_joint 6.510204e-04

Joint ci ratio: 2.170377e-01	ci left: 5.812648e-04	ci right 7.246239e-04	k: 325	n:500000
Cons ci ratio: 4.587673e-01	ci left: 1.126728e-04	ci right 1.813408e-04	k: 72	n:500000
KS ci ratio: 2.363959e-02	ci left: 5.151148e-02	ci right 5.274572e-02	k: 26063	n:500000
ACVR1B   500000 perm   239 sec   (2089 perm/sec)   p_kst 5.212600e-02   p_cons 1.440000e-04   p_joint 6.500000e-04

Joint ci ratio: 2.236587e-01	ci left: 5.346667e-04	ci right 6.711104e-04	k: 306	n:510000
Cons ci ratio: 4.587680e-01	ci left: 1.104635e-04	ci right 1.777851e-04	k: 72	n:510000
KS ci ratio: 2.342588e-02	ci left: 5.143706e-02	ci right 5.265823e-02	k: 26543	n:510000
ACVR1B   510000 perm   246 sec   (2071 perm/sec)   p_kst 5.204510e-02   p_cons 1.411765e-04   p_joint 6.000000e-04

Joint ci ratio: 2.222161e-01	ci left: 5.316473e-04	ci right 6.663257e-04	k: 310	n:520000
Cons ci ratio: 4.556579e-01	ci left: 1.100407e-04	ci right 1.765094e-04	k: 73	n:520000
KS ci ratio: 2.319659e-02	ci left: 5.145545e-02	ci right 5.266494e-02	k: 27070	n:520000
ACVR1B   520000 perm   253 sec   (2055 perm/sec)   p_kst 5.205769e-02   p_cons 1.403846e-04   p_joint 5.961538e-04

Joint ci ratio: 2.197565e-01	ci left: 5.340929e-04	ci right 6.676908e-04	k: 317	n:530000
Cons ci ratio: 4.496222e-01	ci left: 1.113077e-04	ci right 1.773801e-04	k: 75	n:530000
KS ci ratio: 2.298620e-02	ci left: 5.142065e-02	ci right 5.261821e-02	k: 27569	n:530000
ACVR1B   530000 perm   260 sec   (2038 perm/sec)   p_kst 5.201698e-02   p_cons 1.415094e-04   p_joint 5.981132e-04

Joint ci ratio: 2.190695e-01	ci left: 5.277022e-04	ci right 6.592334e-04	k: 319	n:540000
Cons ci ratio: 4.466932e-01	ci left: 1.108892e-04	ci right 1.761549e-04	k: 76	n:540000
KS ci ratio: 2.276476e-02	ci left: 5.145902e-02	ci right 5.264579e-02	k: 28107	n:540000
ACVR1B   540000 perm   267 sec   (2022 perm/sec)   p_kst 5.205000e-02   p_cons 1.407407e-04   p_joint 5.907407e-04

Joint ci ratio: 2.160518e-01	ci left: 5.335799e-04	ci right 6.645010e-04	k: 328	n:550000
Cons ci ratio: 4.410024e-01	ci left: 1.121030e-04	ci right 1.769924e-04	k: 78	n:550000
KS ci ratio: 2.256913e-02	ci left: 5.141106e-02	ci right 5.258639e-02	k: 28598	n:550000
ACVR1B   550000 perm   274 sec   (2005 perm/sec)   p_kst 5.199636e-02   p_cons 1.418182e-04   p_joint 5.963636e-04

Joint ci ratio: 2.144287e-01	ci left: 5.324989e-04	ci right 6.620441e-04	k: 333	n:560000
Cons ci ratio: 4.382376e-01	ci left: 1.116891e-04	ci right 1.758140e-04	k: 79	n:560000
KS ci ratio: 2.235740e-02	ci left: 5.145721e-02	ci right 5.262243e-02	k: 29141	n:560000
ACVR1B   560000 perm   282 sec   (1988 perm/sec)   p_kst 5.203750e-02   p_cons 1.410714e-04   p_joint 5.946429e-04

Joint ci ratio: 2.137903e-01	ci left: 5.264773e-04	ci right 6.541262e-04	k: 335	n:570000
Cons ci ratio: 4.355242e-01	ci left: 1.112910e-04	ci right 1.746758e-04	k: 80	n:570000
KS ci ratio: 2.215938e-02	ci left: 5.146690e-02	ci right 5.262187e-02	k: 29664	n:570000
ACVR1B   570000 perm   289 sec   (1971 perm/sec)   p_kst 5.204211e-02   p_cons 1.403509e-04   p_joint 5.877193e-04

Joint ci ratio: 2.128428e-01	ci left: 5.222960e-04	ci right 6.482966e-04	k: 338	n:580000
Cons ci ratio: 4.355248e-01	ci left: 1.093722e-04	ci right 1.716642e-04	k: 80	n:580000
KS ci ratio: 2.197576e-02	ci left: 5.143512e-02	ci right 5.257970e-02	k: 30163	n:580000
ACVR1B   580000 perm   297 sec   (1954 perm/sec)   p_kst 5.200517e-02   p_cons 1.379310e-04   p_joint 5.827586e-04

Joint ci ratio: 2.180547e-01	ci left: 4.877870e-04	ci right 6.087304e-04	k: 322	n:590000
Cons ci ratio: 4.302453e-01	ci left: 1.105388e-04	ci right 1.725117e-04	k: 82	n:590000
KS ci ratio: 2.177827e-02	ci left: 5.148709e-02	ci right 5.262240e-02	k: 30711	n:590000
ACVR1B   590000 perm   304 sec   (1939 perm/sec)   p_kst 5.205254e-02   p_cons 1.389831e-04   p_joint 5.457627e-04

Joint ci ratio: 2.262645e-01	ci left: 4.434550e-04	ci right 5.581243e-04	k: 299	n:600000
Cons ci ratio: 4.302458e-01	ci left: 1.086965e-04	ci right 1.696366e-04	k: 82	n:600000
KS ci ratio: 2.161156e-02	ci left: 5.142130e-02	ci right 5.254637e-02	k: 31189	n:600000
ACVR1B   600000 perm   312 sec   (1923 perm/sec)   p_kst 5.198167e-02   p_cons 1.366667e-04   p_joint 4.983333e-04

Joint ci ratio: 2.262655e-01	ci left: 4.361851e-04	ci right 5.489750e-04	k: 299	n:610000
Cons ci ratio: 4.302463e-01	ci left: 1.069146e-04	ci right 1.668557e-04	k: 82	n:610000
KS ci ratio: 2.142828e-02	ci left: 5.145066e-02	ci right 5.256671e-02	k: 31724	n:610000
ACVR1B   610000 perm   320 sec   (1906 perm/sec)   p_kst 5.200656e-02   p_cons 1.344262e-04   p_joint 4.901639e-04

Joint ci ratio: 2.317408e-01	ci left: 4.078636e-04	ci right 5.162479e-04	k: 285	n:620000
Cons ci ratio: 4.302468e-01	ci left: 1.051901e-04	ci right 1.641645e-04	k: 82	n:620000
KS ci ratio: 2.125132e-02	ci left: 5.147109e-02	ci right 5.257826e-02	k: 32254	n:620000
ACVR1B   620000 perm   328 sec   (1890 perm/sec)   p_kst 5.202258e-02   p_cons 1.322581e-04   p_joint 4.596774e-04

Joint ci ratio: 2.305352e-01	ci left: 4.058757e-04	ci right 5.130907e-04	k: 288	n:630000
Cons ci ratio: 4.251547e-01	ci left: 1.063532e-04	ci right 1.650731e-04	k: 84	n:630000
KS ci ratio: 2.108037e-02	ci left: 5.148302e-02	ci right 5.258142e-02	k: 32779	n:630000
ACVR1B   630000 perm   336 sec   (1875 perm/sec)   p_kst 5.203016e-02   p_cons 1.333333e-04   p_joint 4.571429e-04

Joint ci ratio: 2.289562e-01	ci left: 4.054242e-04	ci right 5.116828e-04	k: 292	n:640000
Cons ci ratio: 4.226757e-01	ci left: 1.060872e-04	ci right 1.642221e-04	k: 85	n:640000
KS ci ratio: 2.091282e-02	ci left: 5.149772e-02	ci right 5.258759e-02	k: 33306	n:640000
ACVR1B   640000 perm   344 sec   (1861 perm/sec)   p_kst 5.204063e-02   p_cons 1.328125e-04   p_joint 4.562500e-04

Joint ci ratio: 2.266471e-01	ci left: 4.078910e-04	ci right 5.135673e-04	k: 298	n:650000
Cons ci ratio: 4.202397e-01	ci left: 1.058304e-04	ci right 1.633964e-04	k: 86	n:650000
KS ci ratio: 2.074855e-02	ci left: 5.151505e-02	ci right 5.259663e-02	k: 33835	n:650000
ACVR1B   650000 perm   352 sec   (1846 perm/sec)   p_kst 5.205385e-02   p_cons 1.323077e-04   p_joint 4.584615e-04

Joint ci ratio: 2.251462e-01	ci left: 4.074285e-04	ci right 5.121890e-04	k: 302	n:660000
Cons ci ratio: 4.178452e-01	ci left: 1.055823e-04	ci right 1.625947e-04	k: 87	n:660000
KS ci ratio: 2.058683e-02	ci left: 5.153793e-02	ci right 5.261146e-02	k: 34368	n:660000
ACVR1B   660000 perm   360 sec   (1832 perm/sec)   p_kst 5.207273e-02   p_cons 1.318182e-04   p_joint 4.575758e-04

Joint ci ratio: 2.233112e-01	ci left: 4.083911e-04	ci right 5.124255e-04	k: 307	n:670000
Cons ci ratio: 4.178456e-01	ci left: 1.040064e-04	ci right 1.601680e-04	k: 87	n:670000
KS ci ratio: 2.043748e-02	ci left: 5.151857e-02	ci right 5.258382e-02	k: 34873	n:670000
ACVR1B   670000 perm   369 sec   (1817 perm/sec)   p_kst 5.204925e-02   p_cons 1.298507e-04   p_joint 4.582090e-04

Joint ci ratio: 2.222318e-01	ci left: 4.065509e-04	ci right 5.095474e-04	k: 310	n:680000
Cons ci ratio: 4.108999e-01	ci left: 1.064287e-04	ci right 1.626818e-04	k: 90	n:680000
KS ci ratio: 2.028288e-02	ci left: 5.154078e-02	ci right 5.259833e-02	k: 35406	n:680000
ACVR1B   680000 perm   377 sec   (1804 perm/sec)   p_kst 5.206765e-02   p_cons 1.323529e-04   p_joint 4.558824e-04

Joint ci ratio: 2.225909e-01	ci left: 3.992901e-04	ci right 5.006330e-04	k: 309	n:690000
Cons ci ratio: 4.086607e-01	ci left: 1.061861e-04	ci right 1.619220e-04	k: 91	n:690000
KS ci ratio: 2.012582e-02	ci left: 5.159123e-02	ci right 5.264152e-02	k: 35959	n:690000
ACVR1B   690000 perm   385 sec   (1790 perm/sec)   p_kst 5.211449e-02   p_cons 1.318841e-04   p_joint 4.478261e-04

Joint ci ratio: 2.201191e-01	ci left: 4.030316e-04	ci right 5.040345e-04	k: 316	n:700000
Cons ci ratio: 4.042897e-01	ci left: 1.072342e-04	ci right 1.627565e-04	k: 93	n:700000
KS ci ratio: 1.997899e-02	ci left: 5.160756e-02	ci right 5.265044e-02	k: 36489	n:700000
ACVR1B   700000 perm   394 sec   (1777 perm/sec)   p_kst 5.212714e-02   p_cons 1.328571e-04   p_joint 4.514286e-04

Joint ci ratio: 2.180649e-01	ci left: 4.053422e-04	ci right 5.058491e-04	k: 322	n:710000
Cons ci ratio: 4.042901e-01	ci left: 1.057238e-04	ci right 1.604642e-04	k: 93	n:710000
KS ci ratio: 1.983873e-02	ci left: 5.160664e-02	ci right 5.264209e-02	k: 37007	n:710000
ACVR1B   710000 perm   403 sec   (1763 perm/sec)   p_kst 5.212254e-02   p_cons 1.309859e-04   p_joint 4.535211e-04

Joint ci ratio: 2.163963e-01	ci left: 4.062791e-04	ci right 5.061451e-04	k: 327	n:720000
Cons ci ratio: 4.021567e-01	ci left: 1.055034e-04	ci right 1.597646e-04	k: 94	n:720000
KS ci ratio: 1.968975e-02	ci left: 5.166383e-02	ci right 5.269256e-02	k: 37567	n:720000
ACVR1B   720000 perm   412 sec   (1747 perm/sec)   p_kst 5.217639e-02   p_cons 1.305556e-04   p_joint 4.541667e-04

Joint ci ratio: 2.211707e-01	ci left: 3.825858e-04	ci right 4.789851e-04	k: 313	n:730000
Cons ci ratio: 3.959529e-01	ci left: 1.077553e-04	ci right 1.620960e-04	k: 97	n:730000
KS ci ratio: 1.955816e-02	ci left: 5.164858e-02	ci right 5.267005e-02	k: 38075	n:730000
ACVR1B   730000 perm   421 sec   (1733 perm/sec)   p_kst 5.215753e-02   p_cons 1.328767e-04   p_joint 4.287671e-04

Joint ci ratio: 2.201218e-01	ci left: 3.812457e-04	ci right 4.767901e-04	k: 316	n:740000
Cons ci ratio: 3.959533e-01	ci left: 1.062992e-04	ci right 1.599055e-04	k: 97	n:740000
KS ci ratio: 1.942253e-02	ci left: 5.166739e-02	ci right 5.268207e-02	k: 38608	n:740000
ACVR1B   740000 perm   430 sec   (1720 perm/sec)   p_kst 5.217297e-02   p_cons 1.310811e-04   p_joint 4.270270e-04

Joint ci ratio: 2.325650e-01	ci left: 3.346542e-04	ci right 4.239456e-04	k: 283	n:750000
Cons ci ratio: 3.939486e-01	ci left: 1.060827e-04	ci right 1.592385e-04	k: 98	n:750000
KS ci ratio: 1.929020e-02	ci left: 5.168307e-02	ci right 5.269106e-02	k: 39139	n:750000
ACVR1B   750000 perm   439 sec   (1708 perm/sec)   p_kst 5.218533e-02   p_cons 1.306667e-04   p_joint 3.773333e-04

Joint ci ratio: 2.317507e-01	ci left: 3.327293e-04	ci right 4.211518e-04	k: 285	n:760000
Cons ci ratio: 3.939489e-01	ci left: 1.046869e-04	ci right 1.571433e-04	k: 98	n:760000
KS ci ratio: 1.916335e-02	ci left: 5.168395e-02	ci right 5.268526e-02	k: 39659	n:760000
ACVR1B   760000 perm   448 sec   (1696 perm/sec)   p_kst 5.218289e-02   p_cons 1.289474e-04   p_joint 3.750000e-04

Joint ci ratio: 2.297509e-01	ci left: 3.345263e-04	ci right 4.225505e-04	k: 290	n:770000
Cons ci ratio: 3.919743e-01	ci left: 1.044977e-04	ci right 1.565289e-04	k: 99	n:770000
KS ci ratio: 1.903672e-02	ci left: 5.169646e-02	ci right 5.269133e-02	k: 40188	n:770000
ACVR1B   770000 perm   457 sec   (1684 perm/sec)   p_kst 5.219221e-02   p_cons 1.285714e-04   p_joint 3.766234e-04

Joint ci ratio: 2.297515e-01	ci left: 3.302375e-04	ci right 4.171333e-04	k: 290	n:780000
Cons ci ratio: 3.862233e-01	ci left: 1.066279e-04	ci right 1.587427e-04	k: 102	n:780000
KS ci ratio: 1.890938e-02	ci left: 5.172527e-02	ci right 5.271396e-02	k: 40730	n:780000
ACVR1B   780000 perm   466 sec   (1672 perm/sec)   p_kst 5.221795e-02   p_cons 1.307692e-04   p_joint 3.717949e-04

Joint ci ratio: 2.301479e-01	ci left: 3.248642e-04	ci right 4.105146e-04	k: 289	n:790000
Cons ci ratio: 3.825272e-01	ci left: 1.075652e-04	ci right 1.595084e-04	k: 104	n:790000
KS ci ratio: 1.879369e-02	ci left: 5.170548e-02	ci right 5.268768e-02	k: 41234	n:790000
ACVR1B   790000 perm   477 sec   (1655 perm/sec)   p_kst 5.219494e-02   p_cons 1.316456e-04   p_joint 3.658228e-04

Joint ci ratio: 2.278031e-01	ci left: 3.278733e-04	ci right 4.133126e-04	k: 295	n:800000
Cons ci ratio: 3.789351e-01	ci left: 1.084814e-04	ci right 1.602527e-04	k: 106	n:800000
KS ci ratio: 1.868128e-02	ci left: 5.167998e-02	ci right 5.265576e-02	k: 41733	n:800000
ACVR1B   800000 perm   487 sec   (1644 perm/sec)   p_kst 5.216625e-02   p_cons 1.325000e-04   p_joint 3.687500e-04

Joint ci ratio: 2.270376e-01	ci left: 3.261539e-04	ci right 4.108196e-04	k: 297	n:810000
Cons ci ratio: 3.771768e-01	ci left: 1.082593e-04	ci right 1.596256e-04	k: 107	n:810000
KS ci ratio: 1.856437e-02	ci left: 5.168955e-02	ci right 5.265934e-02	k: 42260	n:810000
ACVR1B   810000 perm   496 sec   (1632 perm/sec)   p_kst 5.217284e-02   p_cons 1.320988e-04   p_joint 3.666667e-04

Joint ci ratio: 1.686343e-01	ci left: 6.030053e-04	ci right 7.152050e-04	k: 539	n:820000
Cons ci ratio: 3.754427e-01	ci left: 1.080433e-04	ci right 1.590133e-04	k: 108	n:820000
KS ci ratio: 1.844986e-02	ci left: 5.169769e-02	ci right 5.266158e-02	k: 42786	n:820000
ACVR1B   820000 perm   506 sec   (1621 perm/sec)   p_kst 5.217805e-02   p_cons 1.317073e-04   p_joint 6.573171e-04

Joint ci ratio: 1.683233e-01	ci left: 5.980480e-04	ci right 7.090994e-04	k: 541	n:830000
Cons ci ratio: 3.720448e-01	ci left: 1.089249e-04	ci right 1.597325e-04	k: 110	n:830000
KS ci ratio: 1.834727e-02	ci left: 5.165286e-02	ci right 5.261051e-02	k: 43268	n:830000
ACVR1B   830000 perm   516 sec   (1610 perm/sec)   p_kst 5.213012e-02   p_cons 1.325301e-04   p_joint 6.518072e-04

Joint ci ratio: 1.698996e-01	ci left: 5.795270e-04	ci right 6.882502e-04	k: 531	n:840000
Cons ci ratio: 3.687376e-01	ci left: 1.097875e-04	ci right 1.604325e-04	k: 112	n:840000
KS ci ratio: 1.823253e-02	ci left: 5.168380e-02	ci right 5.263596e-02	k: 43813	n:840000
ACVR1B   840000 perm   526 sec   (1598 perm/sec)   p_kst 5.215833e-02   p_cons 1.333333e-04   p_joint 6.321429e-04

Joint ci ratio: 1.681695e-01	ci left: 5.851029e-04	ci right 6.936411e-04	k: 542	n:850000
Cons ci ratio: 3.655169e-01	ci left: 1.106318e-04	ci right 1.611141e-04	k: 114	n:850000
KS ci ratio: 1.811497e-02	ci left: 5.174096e-02	ci right 5.268797e-02	k: 44381	n:850000
ACVR1B   850000 perm   536 sec   (1587 perm/sec)   p_kst 5.221294e-02   p_cons 1.341176e-04   p_joint 6.376471e-04

Joint ci ratio: 1.670958e-01	ci left: 5.860975e-04	ci right 6.940562e-04	k: 549	n:860000
Cons ci ratio: 3.639381e-01	ci left: 1.104016e-04	ci right 1.605096e-04	k: 115	n:860000
KS ci ratio: 1.800028e-02	ci left: 5.179335e-02	ci right 5.273525e-02	k: 44946	n:860000
ACVR1B   860000 perm   545 sec   (1577 perm/sec)   p_kst 5.226279e-02   p_cons 1.337209e-04   p_joint 6.383721e-04

Joint ci ratio: 1.684815e-01	ci left: 5.694499e-04	ci right 6.753002e-04	k: 540	n:870000
Cons ci ratio: 3.608406e-01	ci left: 1.112221e-04	ci right 1.611719e-04	k: 117	n:870000
KS ci ratio: 1.789770e-02	ci left: 5.178961e-02	ci right 5.272602e-02	k: 45463	n:870000
ACVR1B   870000 perm   557 sec   (1563 perm/sec)   p_kst 5.225632e-02   p_cons 1.344828e-04   p_joint 6.206897e-04

Joint ci ratio: 1.683265e-01	ci left: 5.640672e-04	ci right 6.688107e-04	k: 541	n:880000
Cons ci ratio: 3.593213e-01	ci left: 1.109918e-04	ci right 1.605792e-04	k: 118	n:880000
KS ci ratio: 1.779441e-02	ci left: 5.179955e-02	ci right 5.273068e-02	k: 45992	n:880000
ACVR1B   880000 perm   569 sec   (1547 perm/sec)   p_kst 5.226364e-02   p_cons 1.340909e-04   p_joint 6.147727e-04

Joint ci ratio: 1.675555e-01	ci left: 5.631112e-04	ci right 6.671499e-04	k: 546	n:890000
Cons ci ratio: 3.578211e-01	ci left: 1.107671e-04	ci right 1.599993e-04	k: 119	n:890000
KS ci ratio: 1.770332e-02	ci left: 5.175109e-02	ci right 5.267654e-02	k: 46469	n:890000
ACVR1B   890000 perm   580 sec   (1534 perm/sec)   p_kst 5.221236e-02   p_cons 1.337079e-04   p_joint 6.134831e-04

Joint ci ratio: 1.660442e-01	ci left: 5.675018e-04	ci right 6.713115e-04	k: 556	n:900000
Cons ci ratio: 3.563395e-01	ci left: 1.105478e-04	ci right 1.594319e-04	k: 120	n:900000
KS ci ratio: 1.760670e-02	ci left: 5.174246e-02	ci right 5.266265e-02	k: 46981	n:900000
ACVR1B   900000 perm   593 sec   (1518 perm/sec)   p_kst 5.220111e-02   p_cons 1.333333e-04   p_joint 6.177778e-04

Joint ci ratio: 1.657473e-01	ci left: 5.633720e-04	ci right 6.662236e-04	k: 558	n:910000
Cons ci ratio: 3.563397e-01	ci left: 1.093330e-04	ci right 1.576799e-04	k: 120	n:910000
KS ci ratio: 1.751534e-02	ci left: 5.171323e-02	ci right 5.262809e-02	k: 47474	n:910000
ACVR1B   910000 perm   603 sec   (1508 perm/sec)   p_kst 5.216923e-02   p_cons 1.318681e-04   p_joint 6.131868e-04

Joint ci ratio: 1.651577e-01	ci left: 5.614161e-04	ci right 6.635098e-04	k: 562	n:920000
Cons ci ratio: 3.548764e-01	ci left: 1.091344e-04	ci right 1.571497e-04	k: 121	n:920000
KS ci ratio: 1.741677e-02	ci left: 5.173336e-02	ci right 5.264337e-02	k: 48012	n:920000
ACVR1B   920000 perm   614 sec   (1500 perm/sec)   p_kst 5.218696e-02   p_cons 1.315217e-04   p_joint 6.108696e-04

Joint ci ratio: 1.642846e-01	ci left: 5.615650e-04	ci right 6.630926e-04	k: 568	n:930000
Cons ci ratio: 3.520027e-01	ci left: 1.099206e-04	ci right 1.578006e-04	k: 123	n:930000
KS ci ratio: 1.732172e-02	ci left: 5.174237e-02	ci right 5.264752e-02	k: 48540	n:930000
ACVR1B   930000 perm   624 sec   (1491 perm/sec)   p_kst 5.219355e-02   p_cons 1.322581e-04   p_joint 6.107527e-04

Joint ci ratio: 1.634252e-01	ci left: 5.617122e-04	ci right 6.626829e-04	k: 574	n:940000
Cons ci ratio: 3.478201e-01	ci left: 1.116622e-04	ci right 1.595927e-04	k: 126	n:940000
KS ci ratio: 1.722507e-02	ci left: 5.176921e-02	ci right 5.266973e-02	k: 49085	n:940000
ACVR1B   940000 perm   635 sec   (1481 perm/sec)   p_kst 5.221809e-02   p_cons 1.340426e-04   p_joint 6.106383e-04

Joint ci ratio: 1.671009e-01	ci left: 5.305712e-04	ci right 6.283051e-04	k: 549	n:950000
Cons ci ratio: 3.478203e-01	ci left: 1.104868e-04	ci right 1.579128e-04	k: 126	n:950000
KS ci ratio: 1.713548e-02	ci left: 5.176404e-02	ci right 5.265974e-02	k: 49600	n:950000
ACVR1B   950000 perm   645 sec   (1472 perm/sec)   p_kst 5.221053e-02   p_cons 1.326316e-04   p_joint 5.778947e-04

Joint ci ratio: 1.654541e-01	ci left: 5.360260e-04	ci right 6.336948e-04	k: 560	n:960000
Cons ci ratio: 3.478206e-01	ci left: 1.093359e-04	ci right 1.562679e-04	k: 126	n:960000
KS ci ratio: 1.704028e-02	ci left: 5.179946e-02	ci right 5.269074e-02	k: 50154	n:960000
ACVR1B   960000 perm   656 sec   (1462 perm/sec)   p_kst 5.224375e-02   p_cons 1.312500e-04   p_joint 5.833333e-04

Joint ci ratio: 1.667987e-01	ci left: 5.216071e-04	ci right 6.174986e-04	k: 551	n:970000
Cons ci ratio: 3.464593e-01	ci left: 1.091498e-04	ci right 1.557773e-04	k: 127	n:970000
KS ci ratio: 1.694965e-02	ci left: 5.181670e-02	ci right 5.270350e-02	k: 50691	n:970000
ACVR1B   970000 perm   668 sec   (1452 perm/sec)   p_kst 5.225876e-02   p_cons 1.309278e-04   p_joint 5.680412e-04

Joint ci ratio: 1.661978e-01	ci left: 5.201961e-04	ci right 6.154492e-04	k: 555	n:980000
Cons ci ratio: 3.411691e-01	ci left: 1.117653e-04	ci right 1.586204e-04	k: 131	n:980000
KS ci ratio: 1.686514e-02	ci left: 5.180617e-02	ci right 5.268832e-02	k: 51201	n:980000
ACVR1B   980000 perm   679 sec   (1443 perm/sec)   p_kst 5.224592e-02   p_cons 1.336735e-04   p_joint 5.663265e-04

Joint ci ratio: 1.681771e-01	ci left: 5.023593e-04	ci right 5.955528e-04	k: 542	n:990000
Cons ci ratio: 3.386133e-01	ci left: 1.124841e-04	ci right 1.592102e-04	k: 133	n:990000
KS ci ratio: 1.677641e-02	ci left: 5.182805e-02	ci right 5.270588e-02	k: 51743	n:990000
ACVR1B   990000 perm   690 sec   (1434 perm/sec)   p_kst 5.226566e-02   p_cons 1.343434e-04   p_joint 5.474747e-04

Joint ci ratio: 1.675612e-01	ci left: 5.011676e-04	ci right 5.937652e-04	k: 546	n:1000000
Cons ci ratio: 3.361142e-01	ci left: 1.131899e-04	ci right 1.597869e-04	k: 135	n:1000000
KS ci ratio: 1.668838e-02	ci left: 5.185349e-02	ci right 5.272710e-02	k: 52289	n:1000000
ACVR1B   1000000 perm   701 sec   (1426 perm/sec)   p_kst 5.228900e-02   p_cons 1.350000e-04   p_joint 5.460000e-04

Joint ci ratio: 1.684887e-01	ci left: 4.905145e-04	ci right 5.816964e-04	k: 540	n:1010000
Cons ci ratio: 3.324670e-01	ci left: 1.147902e-04	ci right 1.614235e-04	k: 138	n:1010000
KS ci ratio: 1.660903e-02	ci left: 5.183505e-02	ci right 5.270416e-02	k: 52791	n:1010000
ACVR1B   1010000 perm   712 sec   (1418 perm/sec)   p_kst 5.226832e-02   p_cons 1.366337e-04   p_joint 5.346535e-04

Joint ci ratio: 1.683336e-01	ci left: 4.866445e-04	ci right 5.770153e-04	k: 541	n:1020000
Cons ci ratio: 3.324672e-01	ci left: 1.136648e-04	ci right 1.598409e-04	k: 138	n:1020000
KS ci ratio: 1.652671e-02	ci left: 5.184139e-02	ci right 5.270626e-02	k: 53318	n:1020000
ACVR1B   1020000 perm   726 sec   (1404 perm/sec)   p_kst 5.227255e-02   p_cons 1.352941e-04   p_joint 5.303922e-04

Joint ci ratio: 1.671046e-01	ci left: 4.893609e-04	ci right 5.795059e-04	k: 549	n:1030000
Cons ci ratio: 3.324675e-01	ci left: 1.125613e-04	ci right 1.582891e-04	k: 138	n:1030000
KS ci ratio: 1.643739e-02	ci left: 5.189694e-02	ci right 5.275801e-02	k: 53896	n:1030000
ACVR1B   1030000 perm   740 sec   (1393 perm/sec)   p_kst 5.232621e-02   p_cons 1.339806e-04   p_joint 5.330097e-04

Joint ci ratio: 1.660512e-01	ci left: 4.911057e-04	ci right 5.809448e-04	k: 556	n:1040000
Cons ci ratio: 3.312780e-01	ci left: 1.123604e-04	ci right 1.578084e-04	k: 139	n:1040000
KS ci ratio: 1.635568e-02	ci left: 5.191408e-02	ci right 5.277111e-02	k: 54435	n:1040000
ACVR1B   1040000 perm   751 sec   (1385 perm/sec)   p_kst 5.234135e-02   p_cons 1.336538e-04   p_joint 5.346154e-04

Joint ci ratio: 1.647254e-01	ci left: 4.946452e-04	ci right 5.843377e-04	k: 565	n:1050000
Cons ci ratio: 3.255156e-01	ci left: 1.156597e-04	ci right 1.614585e-04	k: 144	n:1050000
KS ci ratio: 1.627611e-02	ci left: 5.192521e-02	ci right 5.277822e-02	k: 54968	n:1050000
ACVR1B   1050000 perm   763 sec   (1376 perm/sec)   p_kst 5.235048e-02   p_cons 1.371429e-04   p_joint 5.380952e-04

Joint ci ratio: 1.637160e-01	ci left: 4.963112e-04	ci right 5.857000e-04	k: 572	n:1060000
Cons ci ratio: 3.243990e-01	ci left: 1.154350e-04	ci right 1.609554e-04	k: 145	n:1060000
KS ci ratio: 1.619354e-02	ci left: 5.196151e-02	ci right 5.281075e-02	k: 55528	n:1060000
ACVR1B   1060000 perm   775 sec   (1367 perm/sec)   p_kst 5.238491e-02   p_cons 1.367925e-04   p_joint 5.396226e-04

Joint ci ratio: 1.628655e-01	ci left: 4.970511e-04	ci right 5.860626e-04	k: 578	n:1070000
Cons ci ratio: 3.232938e-01	ci left: 1.152148e-04	ci right 1.604615e-04	k: 146	n:1070000
KS ci ratio: 1.611918e-02	ci left: 5.195432e-02	ci right 5.279950e-02	k: 56042	n:1070000
ACVR1B   1070000 perm   787 sec   (1360 perm/sec)   p_kst 5.237570e-02   p_cons 1.364486e-04   p_joint 5.401869e-04

Joint ci ratio: 1.620281e-01	ci left: 4.977785e-04	ci right 5.864173e-04	k: 584	n:1080000
Cons ci ratio: 3.232940e-01	ci left: 1.141480e-04	ci right 1.589757e-04	k: 146	n:1080000
KS ci ratio: 1.604151e-02	ci left: 5.197402e-02	ci right 5.281542e-02	k: 56585	n:1080000
ACVR1B   1080000 perm   799 sec   (1352 perm/sec)   p_kst 5.239352e-02   p_cons 1.351852e-04   p_joint 5.407407e-04

Joint ci ratio: 1.609312e-01	ci left: 5.002546e-04	ci right 5.886730e-04	k: 592	n:1090000
Cons ci ratio: 3.200445e-01	ci left: 1.156308e-04	ci right 1.604910e-04	k: 149	n:1090000
KS ci ratio: 1.596509e-02	ci left: 5.199246e-02	ci right 5.283010e-02	k: 57127	n:1090000
ACVR1B   1090000 perm   811 sec   (1345 perm/sec)   p_kst 5.241009e-02   p_cons 1.366972e-04   p_joint 5.431193e-04

Joint ci ratio: 1.599896e-01	ci left: 5.018150e-04	ci right 5.899404e-04	k: 599	n:1100000
Cons ci ratio: 3.179319e-01	ci left: 1.162523e-04	ci right 1.609952e-04	k: 151	n:1100000
KS ci ratio: 1.589339e-02	ci left: 5.198793e-02	ci right 5.282170e-02	k: 57644	n:1100000
ACVR1B   1100000 perm   823 sec   (1337 perm/sec)   p_kst 5.240364e-02   p_cons 1.372727e-04   p_joint 5.445455e-04

Joint ci ratio: 1.591956e-01	ci left: 5.024837e-04	ci right 5.902467e-04	k: 605	n:1110000
Cons ci ratio: 3.168912e-01	ci left: 1.160341e-04	ci right 1.605172e-04	k: 152	n:1110000
KS ci ratio: 1.581949e-02	ci left: 5.200323e-02	ci right 5.283334e-02	k: 58183	n:1110000
ACVR1B   1110000 perm   835 sec   (1330 perm/sec)   p_kst 5.241712e-02   p_cons 1.369369e-04   p_joint 5.450450e-04

Joint ci ratio: 1.589338e-01	ci left: 4.997118e-04	ci right 5.868334e-04	k: 607	n:1120000
Cons ci ratio: 3.128280e-01	ci left: 1.182874e-04	ci right 1.629367e-04	k: 156	n:1120000
KS ci ratio: 1.574237e-02	ci left: 5.204496e-02	ci right 5.287164e-02	k: 58752	n:1120000
ACVR1B   1120000 perm   847 sec   (1322 perm/sec)   p_kst 5.245714e-02   p_cons 1.392857e-04   p_joint 5.419643e-04

Joint ci ratio: 1.585433e-01	ci left: 4.978390e-04	ci right 5.844005e-04	k: 610	n:1130000
Cons ci ratio: 3.118365e-01	ci left: 1.180562e-04	ci right 1.624489e-04	k: 157	n:1130000
KS ci ratio: 1.567208e-02	ci left: 5.204981e-02	ci right 5.287284e-02	k: 59280	n:1130000
ACVR1B   1130000 perm   859 sec   (1315 perm/sec)   p_kst 5.246018e-02   p_cons 1.389381e-04   p_joint 5.398230e-04

Joint ci ratio: 1.588039e-01	ci left: 4.917871e-04	ci right 5.774503e-04	k: 608	n:1140000
Cons ci ratio: 3.118367e-01	ci left: 1.170206e-04	ci right 1.610239e-04	k: 157	n:1140000
KS ci ratio: 1.560699e-02	ci left: 5.202748e-02	ci right 5.284672e-02	k: 59777	n:1140000
ACVR1B   1140000 perm   872 sec   (1308 perm/sec)   p_kst 5.243596e-02   p_cons 1.377193e-04   p_joint 5.333333e-04

Joint ci ratio: 1.654621e-01	ci left: 4.474635e-04	ci right 5.289996e-04	k: 560	n:1150000
Cons ci ratio: 3.348881e-01	ci left: 9.922217e-05	ci right 1.398879e-04	k: 136	n:1150000
KS ci ratio: 1.553863e-02	ci left: 5.203155e-02	ci right 5.284723e-02	k: 60304	n:1150000
ACVR1B   1150000 perm   885 sec   (1299 perm/sec)   p_kst 5.243826e-02   p_cons 1.182609e-04   p_joint 4.869565e-04

Joint ci ratio: 1.665050e-01	ci left: 4.378221e-04	ci right 5.181546e-04	k: 553	n:1160000
Cons ci ratio: 3.324700e-01	ci left: 9.994652e-05	ci right 1.405500e-04	k: 138	n:1160000
KS ci ratio: 1.547693e-02	ci left: 5.199862e-02	ci right 5.281052e-02	k: 60788	n:1160000
ACVR1B   1160000 perm   898 sec   (1291 perm/sec)   p_kst 5.240345e-02   p_cons 1.189655e-04   p_joint 4.767241e-04

Joint ci ratio: 1.645846e-01	ci left: 4.447309e-04	ci right 5.252968e-04	k: 566	n:1170000
Cons ci ratio: 3.312805e-01	ci left: 9.987577e-05	ci right 1.402744e-04	k: 139	n:1170000
KS ci ratio: 1.540827e-02	ci left: 5.201565e-02	ci right 5.282418e-02	k: 61330	n:1170000
ACVR1B   1170000 perm   911 sec   (1284 perm/sec)   p_kst 5.241880e-02   p_cons 1.188034e-04   p_joint 4.837607e-04

Joint ci ratio: 1.640071e-01	ci left: 4.442125e-04	ci right 5.243742e-04	k: 570	n:1180000
Cons ci ratio: 3.301037e-01	ci left: 9.980647e-05	ci right 1.400032e-04	k: 140	n:1180000
KS ci ratio: 1.534719e-02	ci left: 5.198933e-02	ci right 5.279422e-02	k: 61821	n:1180000
ACVR1B   1180000 perm   924 sec   (1277 perm/sec)   p_kst 5.239068e-02   p_cons 1.186441e-04   p_joint 4.830508e-04

Joint ci ratio: 1.666565e-01	ci left: 4.259790e-04	ci right 5.042168e-04	k: 552	n:1190000
Cons ci ratio: 3.289393e-01	ci left: 9.973858e-05	ci right 1.397363e-04	k: 141	n:1190000
KS ci ratio: 1.528075e-02	ci left: 5.200282e-02	ci right 5.280440e-02	k: 62359	n:1190000
ACVR1B   1190000 perm   937 sec   (1270 perm/sec)   p_kst 5.240252e-02   p_cons 1.184874e-04   p_joint 4.638655e-04

Joint ci ratio: 1.657596e-01	ci left: 4.272212e-04	ci right 5.052228e-04	k: 558	n:1200000
Cons ci ratio: 3.255185e-01	ci left: 1.012021e-04	ci right 1.412764e-04	k: 144	n:1200000
KS ci ratio: 1.521835e-02	ci left: 5.199533e-02	ci right 5.279350e-02	k: 62872	n:1200000
ACVR1B   1200000 perm   950 sec   (1263 perm/sec)   p_kst 5.239333e-02   p_cons 1.200000e-04   p_joint 4.650000e-04

Joint ci ratio: 1.651698e-01	ci left: 4.268594e-04	ci right 5.044900e-04	k: 562	n:1210000
Cons ci ratio: 3.255186e-01	ci left: 1.003657e-04	ci right 1.401089e-04	k: 144	n:1210000
KS ci ratio: 1.515281e-02	ci left: 5.201350e-02	ci right 5.280848e-02	k: 63416	n:1210000
ACVR1B   1210000 perm   963 sec   (1257 perm/sec)   p_kst 5.240992e-02   p_cons 1.190083e-04   p_joint 4.644628e-04

Joint ci ratio: 1.420555e-01	ci left: 5.794557e-04	ci right 6.688444e-04	k: 760	n:1220000
Cons ci ratio: 3.232965e-01	ci left: 1.010489e-04	ci right 1.407328e-04	k: 146	n:1220000
KS ci ratio: 1.508897e-02	ci left: 5.202566e-02	ci right 5.281745e-02	k: 63953	n:1220000
ACVR1B   1220000 perm   976 sec   (1249 perm/sec)   p_kst 5.242049e-02   p_cons 1.196721e-04   p_joint 6.229508e-04

Joint ci ratio: 1.415912e-01	ci left: 5.786654e-04	ci right 6.676158e-04	k: 765	n:1230000
Cons ci ratio: 3.222025e-01	ci left: 1.009745e-04	ci right 1.404673e-04	k: 147	n:1230000
KS ci ratio: 1.502373e-02	ci left: 5.205222e-02	ci right 5.284095e-02	k: 64508	n:1230000
ACVR1B   1230000 perm   989 sec   (1243 perm/sec)   p_kst 5.244553e-02   p_cons 1.195122e-04   p_joint 6.219512e-04

Joint ci ratio: 1.411314e-01	ci left: 5.778884e-04	ci right 6.664066e-04	k: 770	n:1240000
Cons ci ratio: 3.222027e-01	ci left: 1.001602e-04	ci right 1.393345e-04	k: 147	n:1240000
KS ci ratio: 1.496272e-02	ci left: 5.205585e-02	ci right 5.284141e-02	k: 65035	n:1240000
ACVR1B   1240000 perm   1003 sec   (1237 perm/sec)   p_kst 5.244758e-02   p_cons 1.185484e-04   p_joint 6.209677e-04

Joint ci ratio: 1.406761e-01	ci left: 5.771243e-04	ci right 6.652163e-04	k: 775	n:1250000
Cons ci ratio: 3.222028e-01	ci left: 9.935891e-05	ci right 1.382198e-04	k: 147	n:1250000
KS ci ratio: 1.490244e-02	ci left: 5.205943e-02	ci right 5.284185e-02	k: 65562	n:1250000
ACVR1B   1250000 perm   1017 sec   (1229 perm/sec)   p_kst 5.244960e-02   p_cons 1.176000e-04   p_joint 6.200000e-04

Joint ci ratio: 1.401354e-01	ci left: 5.771385e-04	ci right 6.648659e-04	k: 781	n:1260000
Cons ci ratio: 3.222030e-01	ci left: 9.857034e-05	ci right 1.371229e-04	k: 147	n:1260000
KS ci ratio: 1.484372e-02	ci left: 5.205742e-02	ci right 5.283670e-02	k: 66082	n:1260000
ACVR1B   1260000 perm   1031 sec   (1222 perm/sec)   p_kst 5.244603e-02   p_cons 1.166667e-04   p_joint 6.198413e-04

Joint ci ratio: 1.395123e-01	ci left: 5.779132e-04	ci right 6.653352e-04	k: 788	n:1270000
Cons ci ratio: 3.222031e-01	ci left: 9.779419e-05	ci right 1.360432e-04	k: 147	n:1270000
KS ci ratio: 1.478721e-02	ci left: 5.204525e-02	ci right 5.282136e-02	k: 66589	n:1270000
ACVR1B   1270000 perm   1045 sec   (1216 perm/sec)   p_kst 5.243228e-02   p_cons 1.157480e-04   p_joint 6.204724e-04

Joint ci ratio: 1.391601e-01	ci left: 5.764142e-04	ci right 6.633712e-04	k: 792	n:1280000
Cons ci ratio: 3.211201e-01	ci left: 9.774835e-05	ci right 1.358244e-04	k: 148	n:1280000
KS ci ratio: 1.473250e-02	ci left: 5.202549e-02	ci right 5.279841e-02	k: 67086	n:1280000
ACVR1B   1280000 perm   1058 sec   (1210 perm/sec)   p_kst 5.241094e-02   p_cons 1.156250e-04   p_joint 6.187500e-04

Joint ci ratio: 1.443537e-01	ci left: 5.300732e-04	ci right 6.132809e-04	k: 736	n:1290000
Cons ci ratio: 3.179351e-01	ci left: 9.912971e-05	ci right 1.372830e-04	k: 151	n:1290000
KS ci ratio: 1.467599e-02	ci left: 5.202227e-02	ci right 5.279215e-02	k: 67604	n:1290000
ACVR1B   1290000 perm   1072 sec   (1203 perm/sec)   p_kst 5.240620e-02   p_cons 1.170543e-04   p_joint 5.705426e-04

Joint ci ratio: 1.449456e-01	ci left: 5.215472e-04	ci right 6.037813e-04	k: 730	n:1300000
Cons ci ratio: 3.179353e-01	ci left: 9.836717e-05	ci right 1.362270e-04	k: 151	n:1300000
KS ci ratio: 1.461639e-02	ci left: 5.204439e-02	ci right 5.281145e-02	k: 68155	n:1300000
ACVR1B   1300000 perm   1086 sec   (1197 perm/sec)   p_kst 5.242692e-02   p_cons 1.161538e-04   p_joint 5.615385e-04

Joint ci ratio: 1.445508e-01	ci left: 5.205088e-04	ci right 6.023362e-04	k: 734	n:1310000
Cons ci ratio: 3.168946e-01	ci left: 9.831883e-05	ci right 1.360110e-04	k: 152	n:1310000
KS ci ratio: 1.455985e-02	ci left: 5.205021e-02	ci right 5.281436e-02	k: 68685	n:1310000
ACVR1B   1310000 perm   1100 sec   (1191 perm/sec)   p_kst 5.243130e-02   p_cons 1.160305e-04   p_joint 5.603053e-04

Joint ci ratio: 1.441591e-01	ci left: 5.194864e-04	ci right 6.009128e-04	k: 738	n:1320000
Cons ci ratio: 3.148434e-01	ci left: 9.896905e-05	ci right 1.366155e-04	k: 154	n:1320000
KS ci ratio: 1.450286e-02	ci left: 5.206350e-02	ci right 5.282483e-02	k: 69225	n:1320000
ACVR1B   1320000 perm   1114 sec   (1185 perm/sec)   p_kst 5.244318e-02   p_cons 1.166667e-04   p_joint 5.590909e-04

Joint ci ratio: 1.431933e-01	ci left: 5.228291e-04	ci right 6.041835e-04	k: 748	n:1330000
Cons ci ratio: 3.138327e-01	ci left: 9.891749e-05	ci right 1.363993e-04	k: 155	n:1330000
KS ci ratio: 1.444687e-02	ci left: 5.207435e-02	ci right 5.283287e-02	k: 69762	n:1330000
ACVR1B   1330000 perm   1128 sec   (1179 perm/sec)   p_kst 5.245263e-02   p_cons 1.165414e-04   p_joint 5.624060e-04

Joint ci ratio: 1.429075e-01	ci left: 5.210860e-04	ci right 6.019936e-04	k: 751	n:1340000
Cons ci ratio: 3.128316e-01	ci left: 9.886689e-05	ci right 1.361862e-04	k: 156	n:1340000
KS ci ratio: 1.439508e-02	ci left: 5.206049e-02	ci right 5.281607e-02	k: 70266	n:1340000
ACVR1B   1340000 perm   1142 sec   (1173 perm/sec)   p_kst 5.243731e-02   p_cons 1.164179e-04   p_joint 5.604478e-04

Joint ci ratio: 1.425290e-01	ci left: 5.200832e-04	ci right 6.006031e-04	k: 755	n:1350000
Cons ci ratio: 3.118401e-01	ci left: 9.881723e-05	ci right 1.359760e-04	k: 157	n:1350000
KS ci ratio: 1.434192e-02	ci left: 5.206014e-02	ci right 5.281290e-02	k: 70788	n:1350000
ACVR1B   1350000 perm   1156 sec   (1168 perm/sec)   p_kst 5.243556e-02   p_cons 1.162963e-04   p_joint 5.592593e-04

Joint ci ratio: 1.462544e-01	ci left: 4.893266e-04	ci right 5.672378e-04	k: 717	n:1360000
Cons ci ratio: 3.108579e-01	ci left: 9.876848e-05	ci right 1.357687e-04	k: 158	n:1360000
KS ci ratio: 1.428575e-02	ci left: 5.208471e-02	ci right 5.283485e-02	k: 71344	n:1360000
ACVR1B   1360000 perm   1170 sec   (1162 perm/sec)   p_kst 5.245882e-02   p_cons 1.161765e-04   p_joint 5.272059e-04

Joint ci ratio: 1.369349e-01	ci left: 5.568699e-04	ci right 6.394256e-04	k: 818	n:1370000
Cons ci ratio: 2.499075e-01	ci left: 1.571400e-04	ci right 2.026813e-04	k: 245	n:1370000
KS ci ratio: 1.423609e-02	ci left: 5.206818e-02	ci right 5.281546e-02	k: 71844	n:1370000
ACVR1B   1370000 perm   1184 sec   (1157 perm/sec)   p_kst 5.244088e-02   p_cons 1.788321e-04   p_joint 5.970803e-04

Joint ci ratio: 1.366849e-01	ci left: 5.549341e-04	ci right 6.370404e-04	k: 821	n:1380000
Cons ci ratio: 2.488978e-01	ci left: 1.573600e-04	ci right 2.027523e-04	k: 247	n:1380000
KS ci ratio: 1.418590e-02	ci left: 5.205913e-02	ci right 5.280362e-02	k: 72354	n:1380000
ACVR1B   1380000 perm   1199 sec   (1151 perm/sec)   p_kst 5.243043e-02   p_cons 1.789855e-04   p_joint 5.949275e-04

Joint ci ratio: 1.375248e-01	ci left: 5.439941e-04	ci right 6.250168e-04	k: 811	n:1390000
Cons ci ratio: 2.483976e-01	ci left: 1.569025e-04	ci right 2.020578e-04	k: 248	n:1390000
KS ci ratio: 1.413400e-02	ci left: 5.206598e-02	ci right 5.280783e-02	k: 72886	n:1390000
ACVR1B   1390000 perm   1213 sec   (1146 perm/sec)   p_kst 5.243597e-02   p_cons 1.784173e-04   p_joint 5.834532e-04

Joint ci ratio: 1.374404e-01	ci left: 5.407981e-04	ci right 6.212913e-04	k: 812	n:1400000
Cons ci ratio: 2.479003e-01	ci left: 1.564517e-04	ci right 2.013732e-04	k: 249	n:1400000
KS ci ratio: 1.408367e-02	ci left: 5.206563e-02	ci right 5.280480e-02	k: 73408	n:1400000
ACVR1B   1400000 perm   1228 sec   (1140 perm/sec)   p_kst 5.243429e-02   p_cons 1.778571e-04   p_joint 5.800000e-04

Joint ci ratio: 1.366027e-01	ci left: 5.438118e-04	ci right 6.242201e-04	k: 822	n:1410000
Cons ci ratio: 2.469146e-01	ci left: 1.566726e-04	ci right 2.014512e-04	k: 251	n:1410000
KS ci ratio: 1.403337e-02	ci left: 5.206881e-02	ci right 5.280537e-02	k: 73935	n:1410000
ACVR1B   1410000 perm   1243 sec   (1135 perm/sec)   p_kst 5.243617e-02   p_cons 1.780142e-04   p_joint 5.829787e-04

Joint ci ratio: 1.367693e-01	ci left: 5.386217e-04	ci right 6.183677e-04	k: 820	n:1420000
Cons ci ratio: 2.469148e-01	ci left: 1.555692e-04	ci right 2.000325e-04	k: 251	n:1420000
KS ci ratio: 1.398470e-02	ci left: 5.206424e-02	ci right 5.279815e-02	k: 74451	n:1420000
ACVR1B   1420000 perm   1258 sec   (1129 perm/sec)   p_kst 5.243028e-02   p_cons 1.767606e-04   p_joint 5.774648e-04

Joint ci ratio: 1.370203e-01	ci left: 5.328290e-04	ci right 6.118739e-04	k: 817	n:1430000
Cons ci ratio: 2.454579e-01	ci left: 1.564498e-04	ci right 2.008608e-04	k: 254	n:1430000
KS ci ratio: 1.393722e-02	ci left: 5.205485e-02	ci right 5.278613e-02	k: 74960	n:1430000
ACVR1B   1430000 perm   1273 sec   (1124 perm/sec)   p_kst 5.241958e-02   p_cons 1.776224e-04   p_joint 5.713287e-04

Joint ci ratio: 1.122277e-01	ci left: 7.990112e-04	ci right 8.946814e-04	k: 1218	n:1440000
Cons ci ratio: 2.546103e-01	ci left: 1.436462e-04	ci right 1.861847e-04	k: 236	n:1440000
KS ci ratio: 1.389099e-02	ci left: 5.204006e-02	ci right 5.276868e-02	k: 75461	n:1440000
ACVR1B   1440000 perm   1288 sec   (1118 perm/sec)   p_kst 5.240347e-02   p_cons 1.638889e-04   p_joint 8.458333e-04

Joint ci ratio: 1.119069e-01	ci left: 7.981930e-04	ci right 8.934741e-04	k: 1225	n:1450000
Cons ci ratio: 2.530139e-01	ci left: 1.445929e-04	ci right 1.871010e-04	k: 239	n:1450000
KS ci ratio: 1.383879e-02	ci left: 5.207154e-02	ci right 5.279784e-02	k: 76029	n:1450000
ACVR1B   1450000 perm   1303 sec   (1113 perm/sec)   p_kst 5.243379e-02   p_cons 1.648276e-04   p_joint 8.448276e-04

Joint ci ratio: 1.145563e-01	ci left: 7.554550e-04	ci right 8.479136e-04	k: 1169	n:1460000
Cons ci ratio: 2.524885e-01	ci left: 1.442441e-04	ci right 1.865477e-04	k: 240	n:1460000
KS ci ratio: 1.379078e-02	ci left: 5.207664e-02	ci right 5.280048e-02	k: 76559	n:1460000
ACVR1B   1460000 perm   1318 sec   (1108 perm/sec)   p_kst 5.243767e-02   p_cons 1.643836e-04   p_joint 8.006849e-04

Joint ci ratio: 1.146547e-01	ci left: 7.489941e-04	ci right 8.407462e-04	k: 1167	n:1470000
Cons ci ratio: 2.509314e-01	ci left: 1.451749e-04	ci right 1.874479e-04	k: 243	n:1470000
KS ci ratio: 1.374326e-02	ci left: 5.208168e-02	ci right 5.280307e-02	k: 77089	n:1470000
ACVR1B   1470000 perm   1333 sec   (1103 perm/sec)   p_kst 5.244150e-02   p_cons 1.653061e-04   p_joint 7.938776e-04

Joint ci ratio: 1.140217e-01	ci left: 7.524660e-04	ci right 8.441002e-04	k: 1180	n:1480000
Cons ci ratio: 2.488993e-01	ci left: 1.467275e-04	ci right 1.890530e-04	k: 247	n:1480000
KS ci ratio: 1.369679e-02	ci left: 5.208262e-02	ci right 5.280156e-02	k: 77613	n:1480000
ACVR1B   1480000 perm   1349 sec   (1097 perm/sec)   p_kst 5.244122e-02   p_cons 1.668919e-04   p_joint 7.972973e-04

Joint ci ratio: 1.136853e-01	ci left: 7.519801e-04	ci right 8.432669e-04	k: 1187	n:1490000
Cons ci ratio: 2.483991e-01	ci left: 1.463721e-04	ci right 1.884970e-04	k: 248	n:1490000
KS ci ratio: 1.364812e-02	ci left: 5.210295e-02	ci right 5.281960e-02	k: 78166	n:1490000
ACVR1B   1490000 perm   1364 sec   (1092 perm/sec)   p_kst 5.246040e-02   p_cons 1.664430e-04   p_joint 7.966443e-04

Joint ci ratio: 1.131153e-01	ci left: 7.547401e-04	ci right 8.458718e-04	k: 1199	n:1500000
Cons ci ratio: 2.479018e-01	ci left: 1.460214e-04	ci right 1.879484e-04	k: 249	n:1500000
KS ci ratio: 1.360105e-02	ci left: 5.211504e-02	ci right 5.282936e-02	k: 78707	n:1500000
ACVR1B   1500000 perm   1380 sec   (1087 perm/sec)   p_kst 5.247133e-02   p_cons 1.660000e-04   p_joint 7.993333e-04

Joint ci ratio: 1.127402e-01	ci left: 7.548902e-04	ci right 8.457176e-04	k: 1207	n:1510000
Cons ci ratio: 2.459419e-01	ci left: 1.475395e-04	ci right 1.895163e-04	k: 253	n:1510000
KS ci ratio: 1.355546e-02	ci left: 5.211971e-02	ci right 5.283168e-02	k: 79237	n:1510000
ACVR1B   1510000 perm   1395 sec   (1082 perm/sec)   p_kst 5.247483e-02   p_cons 1.675497e-04   p_joint 7.993377e-04

Joint ci ratio: 1.123225e-01	ci left: 7.556782e-04	ci right 8.462413e-04	k: 1216	n:1520000
Cons ci ratio: 2.459420e-01	ci left: 1.465689e-04	ci right 1.882695e-04	k: 253	n:1520000
KS ci ratio: 1.350854e-02	ci left: 5.213743e-02	ci right 5.284717e-02	k: 79787	n:1520000
ACVR1B   1520000 perm   1411 sec   (1077 perm/sec)   p_kst 5.249145e-02   p_cons 1.664474e-04   p_joint 8.000000e-04

Joint ci ratio: 1.120926e-01	ci left: 7.539153e-04	ci right 8.440700e-04	k: 1221	n:1530000
Cons ci ratio: 2.454594e-01	ci left: 1.462243e-04	ci right 1.877328e-04	k: 254	n:1530000
KS ci ratio: 1.346397e-02	ci left: 5.214125e-02	ci right 5.284868e-02	k: 80316	n:1530000
ACVR1B   1530000 perm   1427 sec   (1072 perm/sec)   p_kst 5.249412e-02   p_cons 1.660131e-04   p_joint 7.980392e-04

Joint ci ratio: 1.125083e-01	ci left: 7.433395e-04	ci right 8.325811e-04	k: 1212	n:1540000
Cons ci ratio: 2.445024e-01	ci left: 1.464937e-04	ci right 1.878920e-04	k: 256	n:1540000
KS ci ratio: 1.341842e-02	ci left: 5.215538e-02	ci right 5.286059e-02	k: 80861	n:1540000
ACVR1B   1540000 perm   1443 sec   (1067 perm/sec)   p_kst 5.250714e-02   p_cons 1.662338e-04   p_joint 7.870130e-04

Joint ci ratio: 1.133534e-01	ci left: 7.272586e-04	ci right 8.152692e-04	k: 1194	n:1550000
Cons ci ratio: 2.440281e-01	ci left: 1.461543e-04	ci right 1.873644e-04	k: 257	n:1550000
KS ci ratio: 1.337195e-02	ci left: 5.217962e-02	ci right 5.288269e-02	k: 81422	n:1550000
ACVR1B   1550000 perm   1459 sec   (1062 perm/sec)   p_kst 5.253032e-02   p_cons 1.658065e-04   p_joint 7.703226e-04

Joint ci ratio: 1.129758e-01	ci left: 7.275797e-04	ci right 8.153164e-04	k: 1202	n:1560000
Cons ci ratio: 2.430877e-01	ci left: 1.464212e-04	ci right 1.875234e-04	k: 259	n:1560000
KS ci ratio: 1.332759e-02	ci left: 5.219142e-02	ci right 5.289230e-02	k: 81964	n:1560000
ACVR1B   1560000 perm   1475 sec   (1057 perm/sec)   p_kst 5.254103e-02   p_cons 1.660256e-04   p_joint 7.705128e-04

Joint ci ratio: 1.127886e-01	ci left: 7.254212e-04	ci right 8.127430e-04	k: 1206	n:1570000
Cons ci ratio: 2.426217e-01	ci left: 1.460868e-04	ci right 1.870047e-04	k: 260	n:1570000
KS ci ratio: 1.328214e-02	ci left: 5.221449e-02	ci right 5.291327e-02	k: 82524	n:1570000
ACVR1B   1570000 perm   1492 sec   (1052 perm/sec)   p_kst 5.256306e-02   p_cons 1.656051e-04   p_joint 7.681529e-04

Joint ci ratio: 1.124167e-01	ci left: 7.257507e-04	ci right 8.128049e-04	k: 1214	n:1580000
Cons ci ratio: 2.416974e-01	ci left: 1.463512e-04	ci right 1.871636e-04	k: 262	n:1580000
KS ci ratio: 1.323858e-02	ci left: 5.222656e-02	ci right 5.292319e-02	k: 83067	n:1580000
ACVR1B   1580000 perm   1508 sec   (1048 perm/sec)   p_kst 5.257405e-02   p_cons 1.658228e-04   p_joint 7.683544e-04

Joint ci ratio: 1.119568e-01	ci left: 7.272991e-04	ci right 8.141586e-04	k: 1224	n:1590000
Cons ci ratio: 2.416975e-01	ci left: 1.454307e-04	ci right 1.859864e-04	k: 262	n:1590000
KS ci ratio: 1.319470e-02	ci left: 5.224411e-02	ci right 5.293865e-02	k: 83619	n:1590000
ACVR1B   1590000 perm   1524 sec   (1043 perm/sec)   p_kst 5.259057e-02   p_cons 1.647799e-04   p_joint 7.698113e-04

Joint ci ratio: 1.116837e-01	ci left: 7.263985e-04	ci right 8.129250e-04	k: 1230	n:1600000
Cons ci ratio: 2.403306e-01	ci left: 1.462836e-04	ci right 1.868120e-04	k: 265	n:1600000
KS ci ratio: 1.315241e-02	ci left: 5.225273e-02	ci right 5.294514e-02	k: 84157	n:1600000
ACVR1B   1600000 perm   1541 sec   (1038 perm/sec)   p_kst 5.259813e-02   p_cons 1.656250e-04   p_joint 7.687500e-04

Joint ci ratio: 1.114126e-01	ci left: 7.255095e-04	ci right 8.117064e-04	k: 1236	n:1610000
Cons ci ratio: 2.403307e-01	ci left: 1.453750e-04	ci right 1.856517e-04	k: 265	n:1610000
KS ci ratio: 1.311207e-02	ci left: 5.224948e-02	ci right 5.293971e-02	k: 84676	n:1610000
ACVR1B   1610000 perm   1557 sec   (1034 perm/sec)   p_kst 5.259379e-02   p_cons 1.645963e-04   p_joint 7.677019e-04

Joint ci ratio: 1.109204e-01	ci left: 7.276324e-04	ci right 8.136747e-04	k: 1247	n:1620000
Cons ci ratio: 2.394322e-01	ci left: 1.456380e-04	ci right 1.858143e-04	k: 267	n:1620000
KS ci ratio: 1.307040e-02	ci left: 5.225920e-02	ci right 5.294734e-02	k: 85216	n:1620000
ACVR1B   1620000 perm   1574 sec   (1029 perm/sec)   p_kst 5.260247e-02   p_cons 1.648148e-04   p_joint 7.697531e-04

Joint ci ratio: 1.106106e-01	ci left: 7.273439e-04	ci right 8.130962e-04	k: 1254	n:1630000
Cons ci ratio: 2.385438e-01	ci left: 1.458980e-04	ci right 1.859747e-04	k: 269	n:1630000
KS ci ratio: 1.303145e-02	ci left: 5.225106e-02	ci right 5.293703e-02	k: 85727	n:1630000
ACVR1B   1630000 perm   1590 sec   (1025 perm/sec)   p_kst 5.259325e-02   p_cons 1.650307e-04   p_joint 7.693252e-04

Joint ci ratio: 1.101289e-01	ci left: 7.294311e-04	ci right 8.150307e-04	k: 1265	n:1640000
Cons ci ratio: 2.376651e-01	ci left: 1.461552e-04	ci right 1.861328e-04	k: 271	n:1640000
KS ci ratio: 1.299126e-02	ci left: 5.225518e-02	ci right 5.293908e-02	k: 86258	n:1640000
ACVR1B   1640000 perm   1607 sec   (1021 perm/sec)   p_kst 5.259634e-02   p_cons 1.652439e-04   p_joint 7.713415e-04

Joint ci ratio: 1.101292e-01	ci left: 7.250102e-04	ci right 8.100912e-04	k: 1265	n:1650000
Cons ci ratio: 2.376652e-01	ci left: 1.452694e-04	ci right 1.850048e-04	k: 271	n:1650000
KS ci ratio: 1.294938e-02	ci left: 5.227497e-02	ci right 5.295690e-02	k: 86815	n:1650000
ACVR1B   1650000 perm   1624 sec   (1016 perm/sec)   p_kst 5.261515e-02   p_cons 1.642424e-04   p_joint 7.666667e-04

Joint ci ratio: 1.099557e-01	ci left: 7.229859e-04	ci right 8.076871e-04	k: 1269	n:1660000
Cons ci ratio: 2.376654e-01	ci left: 1.443942e-04	ci right 1.838903e-04	k: 271	n:1660000
KS ci ratio: 1.290877e-02	ci left: 5.228792e-02	ci right 5.296786e-02	k: 87361	n:1660000
ACVR1B   1660000 perm   1641 sec   (1012 perm/sec)   p_kst 5.262711e-02   p_cons 1.632530e-04   p_joint 7.644578e-04

Joint ci ratio: 1.096970e-01	ci left: 7.221508e-04	ci right 8.065422e-04	k: 1275	n:1670000
Cons ci ratio: 2.372297e-01	ci left: 1.440928e-04	ci right 1.834235e-04	k: 272	n:1670000
KS ci ratio: 1.287055e-02	ci left: 5.228519e-02	ci right 5.296307e-02	k: 87881	n:1670000
ACVR1B   1670000 perm   1658 sec   (1007 perm/sec)   p_kst 5.262335e-02   p_cons 1.628743e-04   p_joint 7.634731e-04

Joint ci ratio: 1.092696e-01	ci left: 7.236417e-04	ci right 8.078566e-04	k: 1285	n:1680000
Cons ci ratio: 2.363655e-01	ci left: 1.443549e-04	ci right 1.835927e-04	k: 274	n:1680000
KS ci ratio: 1.283075e-02	ci left: 5.229733e-02	ci right 5.297326e-02	k: 88426	n:1680000
ACVR1B   1680000 perm   1675 sec   (1003 perm/sec)   p_kst 5.263452e-02   p_cons 1.630952e-04   p_joint 7.648810e-04

Joint ci ratio: 1.088891e-01	ci left: 7.245399e-04	ci right 8.085470e-04	k: 1294	n:1690000
Cons ci ratio: 2.330002e-01	ci left: 1.479562e-04	ci right 1.875178e-04	k: 282	n:1690000
KS ci ratio: 1.279314e-02	ci left: 5.229518e-02	ci right 5.296908e-02	k: 88947	n:1690000
ACVR1B   1690000 perm   1692 sec   (999 perm/sec)   p_kst 5.263136e-02   p_cons 1.668639e-04   p_joint 7.656805e-04

Joint ci ratio: 1.086378e-01	ci left: 7.237113e-04	ci right 8.074163e-04	k: 1300	n:1700000
Cons ci ratio: 2.325897e-01	ci left: 1.476398e-04	ci right 1.870373e-04	k: 283	n:1700000
KS ci ratio: 1.275496e-02	ci left: 5.230009e-02	ci right 5.297203e-02	k: 89480	n:1700000
ACVR1B   1700000 perm   1709 sec   (995 perm/sec)   p_kst 5.263529e-02   p_cons 1.664706e-04   p_joint 7.647059e-04

Joint ci ratio: 1.082640e-01	ci left: 7.245995e-04	ci right 8.081004e-04	k: 1309	n:1710000
Cons ci ratio: 2.317750e-01	ci left: 1.478780e-04	ci right 1.871810e-04	k: 285	n:1710000
KS ci ratio: 1.271808e-02	ci left: 5.229736e-02	ci right 5.296731e-02	k: 90000	n:1710000
ACVR1B   1710000 perm   1727 sec   (990 perm/sec)   p_kst 5.263158e-02   p_cons 1.666667e-04   p_joint 7.654971e-04

Joint ci ratio: 1.085132e-01	ci left: 7.169928e-04	ci right 7.998194e-04	k: 1303	n:1720000
Cons ci ratio: 2.305688e-01	ci left: 1.486614e-04	ci right 1.879377e-04	k: 288	n:1720000
KS ci ratio: 1.268367e-02	ci left: 5.227786e-02	ci right 5.294574e-02	k: 90491	n:1720000
ACVR1B   1720000 perm   1744 sec   (986 perm/sec)   p_kst 5.261105e-02   p_cons 1.674419e-04   p_joint 7.575581e-04

Joint ci ratio: 1.084302e-01	ci left: 7.139729e-04	ci right 7.963837e-04	k: 1305	n:1730000
Cons ci ratio: 2.305689e-01	ci left: 1.478021e-04	ci right 1.868514e-04	k: 288	n:1730000
KS ci ratio: 1.264880e-02	ci left: 5.226435e-02	ci right 5.293021e-02	k: 90992	n:1730000
ACVR1B   1730000 perm   1762 sec   (982 perm/sec)   p_kst 5.259653e-02   p_cons 1.664740e-04   p_joint 7.543353e-04

Joint ci ratio: 1.085553e-01	ci left: 7.081922e-04	ci right 7.900360e-04	k: 1302	n:1740000
Cons ci ratio: 2.297752e-01	ci left: 1.480358e-04	ci right 1.869931e-04	k: 290	n:1740000
KS ci ratio: 1.261480e-02	ci left: 5.224642e-02	ci right 5.291024e-02	k: 91485	n:1740000
ACVR1B   1740000 perm   1779 sec   (978 perm/sec)   p_kst 5.257759e-02   p_cons 1.666667e-04   p_joint 7.482759e-04

Joint ci ratio: 1.082236e-01	ci left: 7.085929e-04	ci right 7.902168e-04	k: 1310	n:1750000
Cons ci ratio: 2.289896e-01	ci left: 1.482671e-04	ci right 1.871330e-04	k: 292	n:1750000
KS ci ratio: 1.257732e-02	ci left: 5.225832e-02	ci right 5.292031e-02	k: 92030	n:1750000
ACVR1B   1750000 perm   1797 sec   (974 perm/sec)   p_kst 5.258857e-02   p_cons 1.668571e-04   p_joint 7.485714e-04

Joint ci ratio: 1.080179e-01	ci left: 7.073308e-04	ci right 7.886447e-04	k: 1315	n:1760000
Cons ci ratio: 2.285999e-01	ci left: 1.479603e-04	ci right 1.866704e-04	k: 293	n:1760000
KS ci ratio: 1.254131e-02	ci left: 5.226102e-02	ci right 5.292113e-02	k: 92559	n:1760000
ACVR1B   1760000 perm   1815 sec   (970 perm/sec)   p_kst 5.259034e-02   p_cons 1.664773e-04   p_joint 7.471591e-04

Joint ci ratio: 1.076503e-01	ci left: 7.082822e-04	ci right 7.894109e-04	k: 1324	n:1770000
Cons ci ratio: 2.278263e-01	ci left: 1.481897e-04	ci right 1.868102e-04	k: 295	n:1770000
KS ci ratio: 1.250704e-02	ci left: 5.225243e-02	ci right 5.291062e-02	k: 93068	n:1770000
ACVR1B   1770000 perm   1833 sec   (966 perm/sec)   p_kst 5.258079e-02   p_cons 1.666667e-04   p_joint 7.480226e-04

Joint ci ratio: 1.076912e-01	ci left: 7.037564e-04	ci right 7.843991e-04	k: 1323	n:1780000
Cons ci ratio: 2.266803e-01	ci left: 1.489466e-04	ci right 1.875419e-04	k: 298	n:1780000
KS ci ratio: 1.247395e-02	ci left: 5.223666e-02	ci right 5.289289e-02	k: 93564	n:1780000
ACVR1B   1780000 perm   1851 sec   (962 perm/sec)   p_kst 5.256404e-02   p_cons 1.674157e-04   p_joint 7.432584e-04

Joint ci ratio: 1.074077e-01	ci left: 7.036302e-04	ci right 7.840328e-04	k: 1330	n:1790000
Cons ci ratio: 2.255516e-01	ci left: 1.496956e-04	ci right 1.882649e-04	k: 301	n:1790000
KS ci ratio: 1.243820e-02	ci left: 5.224445e-02	ci right 5.289889e-02	k: 94102	n:1790000
ACVR1B   1790000 perm   1869 sec   (958 perm/sec)   p_kst 5.257095e-02   p_cons 1.681564e-04   p_joint 7.430168e-04

Joint ci ratio: 1.075293e-01	ci left: 6.980992e-04	ci right 7.779657e-04	k: 1327	n:1800000
Cons ci ratio: 2.248084e-01	ci left: 1.499124e-04	ci right 1.883927e-04	k: 303	n:1800000
KS ci ratio: 1.240344e-02	ci left: 5.224663e-02	ci right 5.289925e-02	k: 94630	n:1800000
ACVR1B   1800000 perm   1887 sec   (954 perm/sec)   p_kst 5.257222e-02   p_cons 1.683333e-04   p_joint 7.372222e-04

Joint ci ratio: 1.072872e-01	ci left: 6.974681e-04	ci right 7.770715e-04	k: 1333	n:1810000
Cons ci ratio: 2.244396e-01	ci left: 1.496056e-04	ci right 1.879354e-04	k: 304	n:1810000
KS ci ratio: 1.236849e-02	ci left: 5.225264e-02	ci right 5.290349e-02	k: 95165	n:1810000
ACVR1B   1810000 perm   1906 sec   (950 perm/sec)   p_kst 5.257735e-02   p_cons 1.679558e-04   p_joint 7.364641e-04

Joint ci ratio: 1.070068e-01	ci left: 6.973789e-04	ci right 7.767511e-04	k: 1340	n:1820000
Cons ci ratio: 2.240726e-01	ci left: 1.493021e-04	ci right 1.874830e-04	k: 305	n:1820000
KS ci ratio: 1.233234e-02	ci left: 5.227064e-02	ci right 5.291980e-02	k: 95722	n:1820000
ACVR1B   1820000 perm   1924 sec   (946 perm/sec)   p_kst 5.259451e-02   p_cons 1.675824e-04   p_joint 7.362637e-04

Joint ci ratio: 1.067683e-01	ci left: 6.967592e-04	ci right 7.758729e-04	k: 1346	n:1830000
Cons ci ratio: 2.237074e-01	ci left: 1.490021e-04	ci right 1.870356e-04	k: 306	n:1830000
KS ci ratio: 1.229739e-02	ci left: 5.228136e-02	ci right 5.292880e-02	k: 96266	n:1830000
ACVR1B   1830000 perm   1943 sec   (942 perm/sec)   p_kst 5.260437e-02   p_cons 1.672131e-04   p_joint 7.355191e-04

Joint ci ratio: 1.074492e-01	ci left: 6.839806e-04	ci right 7.621699e-04	k: 1329	n:1840000
Cons ci ratio: 2.233440e-01	ci left: 1.487053e-04	ci right 1.865929e-04	k: 307	n:1840000
KS ci ratio: 1.226252e-02	ci left: 5.229360e-02	ci right 5.293933e-02	k: 96813	n:1840000
ACVR1B   1840000 perm   1961 sec   (938 perm/sec)   p_kst 5.261576e-02   p_cons 1.668478e-04   p_joint 7.222826e-04

Joint ci ratio: 1.070075e-01	ci left: 6.860699e-04	ci right 7.641554e-04	k: 1340	n:1850000
Cons ci ratio: 2.229823e-01	ci left: 1.484118e-04	ci right 1.861550e-04	k: 308	n:1850000
KS ci ratio: 1.223081e-02	ci left: 5.228252e-02	ci right 5.292644e-02	k: 97317	n:1850000
ACVR1B   1850000 perm   1980 sec   (935 perm/sec)   p_kst 5.260378e-02   p_cons 1.664865e-04   p_joint 7.243243e-04

Joint ci ratio: 1.066501e-01	ci left: 6.870908e-04	ci right 7.650149e-04	k: 1349	n:1860000
Cons ci ratio: 2.229824e-01	ci left: 1.476139e-04	ci right 1.851542e-04	k: 308	n:1860000
KS ci ratio: 1.219868e-02	ci left: 5.227694e-02	ci right 5.291908e-02	k: 97831	n:1860000
ACVR1B   1860000 perm   1998 sec   (931 perm/sec)   p_kst 5.259731e-02   p_cons 1.655914e-04   p_joint 7.252688e-04

Joint ci ratio: 1.065320e-01	ci left: 6.849780e-04	ci right 7.625710e-04	k: 1352	n:1870000
Cons ci ratio: 2.208483e-01	ci left: 1.498548e-04	ci right 1.875507e-04	k: 314	n:1870000
KS ci ratio: 1.216588e-02	ci left: 5.227887e-02	ci right 5.291931e-02	k: 98359	n:1870000
ACVR1B   1870000 perm   2017 sec   (927 perm/sec)   p_kst 5.259840e-02   p_cons 1.679144e-04   p_joint 7.229947e-04

Joint ci ratio: 1.062184e-01	ci left: 6.854766e-04	ci right 7.628833e-04	k: 1360	n:1880000
Cons ci ratio: 2.204986e-01	ci left: 1.495602e-04	ci right 1.871143e-04	k: 315	n:1880000
KS ci ratio: 1.213374e-02	ci left: 5.227761e-02	ci right 5.291632e-02	k: 98881	n:1880000
ACVR1B   1880000 perm   2036 sec   (923 perm/sec)   p_kst 5.259628e-02   p_cons 1.675532e-04   p_joint 7.234043e-04

Joint ci ratio: 1.064930e-01	ci left: 6.782444e-04	ci right 7.550448e-04	k: 1353	n:1890000
Cons ci ratio: 2.201506e-01	ci left: 1.492688e-04	ci right 1.866825e-04	k: 316	n:1890000
KS ci ratio: 1.210166e-02	ci left: 5.227794e-02	ci right 5.291496e-02	k: 99406	n:1890000
ACVR1B   1890000 perm   2054 sec   (920 perm/sec)   p_kst 5.259577e-02   p_cons 1.671958e-04   p_joint 7.158730e-04

Joint ci ratio: 1.061018e-01	ci left: 6.797980e-04	ci right 7.564739e-04	k: 1363	n:1900000
Cons ci ratio: 2.184345e-01	ci left: 1.509702e-04	ci right 1.884759e-04	k: 321	n:1900000
KS ci ratio: 1.207047e-02	ci left: 5.227303e-02	ci right 5.290833e-02	k: 99921	n:1900000
ACVR1B   1900000 perm   2073 sec   (916 perm/sec)   p_kst 5.259000e-02   p_cons 1.689474e-04   p_joint 7.173684e-04

Joint ci ratio: 1.057534e-01	ci left: 6.808260e-04	ci right 7.573501e-04	k: 1372	n:1910000
Cons ci ratio: 2.174239e-01	ci left: 1.516647e-04	ci right 1.891454e-04	k: 324	n:1910000
KS ci ratio: 1.203832e-02	ci left: 5.227809e-02	ci right 5.291175e-02	k: 100455	n:1910000
ACVR1B   1910000 perm   2092 sec   (913 perm/sec)   p_kst 5.259424e-02   p_cons 1.696335e-04   p_joint 7.183246e-04

Joint ci ratio: 1.054085e-01	ci left: 6.818438e-04	ci right 7.582168e-04	k: 1381	n:1920000
Cons ci ratio: 2.164272e-01	ci left: 1.523524e-04	ci right 1.898075e-04	k: 327	n:1920000
KS ci ratio: 1.200498e-02	ci left: 5.229504e-02	ci right 5.292714e-02	k: 101012	n:1920000
ACVR1B   1920000 perm   2112 sec   (909 perm/sec)   p_kst 5.261042e-02   p_cons 1.703125e-04   p_joint 7.192708e-04

Joint ci ratio: 1.057153e-01	ci left: 6.742752e-04	ci right 7.500339e-04	k: 1373	n:1930000
Cons ci ratio: 2.151194e-01	ci left: 1.535236e-04	ci right 1.910084e-04	k: 331	n:1930000
KS ci ratio: 1.197416e-02	ci left: 5.229322e-02	ci right 5.292367e-02	k: 101533	n:1930000
ACVR1B   1930000 perm   2131 sec   (906 perm/sec)   p_kst 5.260777e-02   p_cons 1.715026e-04   p_joint 7.113990e-04

Joint ci ratio: 1.055619e-01	ci left: 6.728069e-04	ci right 7.482841e-04	k: 1377	n:1940000
Cons ci ratio: 2.144743e-01	ci left: 1.537077e-04	ci right 1.911101e-04	k: 333	n:1940000
KS ci ratio: 1.194166e-02	ci left: 5.230736e-02	ci right 5.293625e-02	k: 102085	n:1940000
ACVR1B   1940000 perm   2150 sec   (902 perm/sec)   p_kst 5.262113e-02   p_cons 1.716495e-04   p_joint 7.097938e-04

Joint ci ratio: 1.052948e-01	ci left: 6.728517e-04	ci right 7.481311e-04	k: 1384	n:1950000
Cons ci ratio: 2.138351e-01	ci left: 1.538901e-04	ci right 1.912106e-04	k: 335	n:1950000
KS ci ratio: 1.191248e-02	ci left: 5.229578e-02	ci right 5.292299e-02	k: 102587	n:1950000
ACVR1B   1950000 perm   2169 sec   (899 perm/sec)   p_kst 5.260872e-02   p_cons 1.717949e-04   p_joint 7.097436e-04

Joint ci ratio: 1.051810e-01	ci left: 6.709090e-04	ci right 7.458850e-04	k: 1387	n:1960000
Cons ci ratio: 2.135176e-01	ci left: 1.535879e-04	ci right 1.907725e-04	k: 336	n:1960000
KS ci ratio: 1.188279e-02	ci left: 5.229043e-02	ci right 5.291600e-02	k: 103101	n:1960000
ACVR1B   1960000 perm   2189 sec   (895 perm/sec)   p_kst 5.260255e-02   p_cons 1.714286e-04   p_joint 7.076531e-04

Joint ci ratio: 1.048416e-01	ci left: 6.719520e-04	ci right 7.467873e-04	k: 1396	n:1970000
Cons ci ratio: 2.132015e-01	ci left: 1.532887e-04	ci right 1.903388e-04	k: 337	n:1970000
KS ci ratio: 1.185368e-02	ci left: 5.228210e-02	ci right 5.290602e-02	k: 103609	n:1970000
ACVR1B   1970000 perm   2209 sec   (892 perm/sec)   p_kst 5.259340e-02   p_cons 1.710660e-04   p_joint 7.086294e-04

Joint ci ratio: 1.048043e-01	ci left: 6.690500e-04	ci right 7.435340e-04	k: 1397	n:1980000
Cons ci ratio: 2.132016e-01	ci left: 1.525145e-04	ci right 1.893775e-04	k: 337	n:1980000
KS ci ratio: 1.182365e-02	ci left: 5.228342e-02	ci right 5.290577e-02	k: 104136	n:1980000
ACVR1B   1980000 perm   2228 sec   (889 perm/sec)   p_kst 5.259394e-02   p_cons 1.702020e-04   p_joint 7.055556e-04

Joint ci ratio: 1.049172e-01	ci left: 6.642199e-04	ci right 7.382507e-04	k: 1394	n:1990000
Cons ci ratio: 2.128870e-01	ci left: 1.522238e-04	ci right 1.889552e-04	k: 338	n:1990000
KS ci ratio: 1.179628e-02	ci left: 5.226419e-02	ci right 5.288486e-02	k: 104622	n:1990000
ACVR1B   1990000 perm   2248 sec   (885 perm/sec)   p_kst 5.257387e-02   p_cons 1.698492e-04   p_joint 7.005025e-04

Joint ci ratio: 1.045431e-01	ci left: 6.657678e-04	ci right 7.396903e-04	k: 1404	n:2000000
Cons ci ratio: 2.122618e-01	ci left: 1.524095e-04	ci right 1.890635e-04	k: 340	n:2000000
KS ci ratio: 1.176673e-02	ci left: 5.226509e-02	ci right 5.288421e-02	k: 105148	n:2000000
ACVR1B   2000000 perm   2268 sec   (882 perm/sec)   p_kst 5.257400e-02   p_cons 1.700000e-04   p_joint 7.020000e-04

Joint ci ratio: 1.043576e-01	ci left: 6.648781e-04	ci right 7.385628e-04	k: 1409	n:2010000
Cons ci ratio: 2.113341e-01	ci left: 1.530646e-04	ci right 1.896945e-04	k: 343	n:2010000
KS ci ratio: 1.173688e-02	ci left: 5.227045e-02	ci right 5.288805e-02	k: 105683	n:2010000
ACVR1B   2010000 perm   2288 sec   (879 perm/sec)   p_kst 5.257861e-02   p_cons 1.706468e-04   p_joint 7.009950e-04

Joint ci ratio: 1.040995e-01	ci left: 6.649617e-04	ci right 7.384622e-04	k: 1416	n:2020000
Cons ci ratio: 2.110276e-01	ci left: 1.527757e-04	ci right 1.892766e-04	k: 344	n:2020000
KS ci ratio: 1.170819e-02	ci left: 5.226787e-02	ci right 5.288391e-02	k: 106202	n:2020000
ACVR1B   2020000 perm   2308 sec   (875 perm/sec)   p_kst 5.257525e-02   p_cons 1.702970e-04   p_joint 7.009901e-04

Joint ci ratio: 1.043209e-01	ci left: 6.588072e-04	ci right 7.317919e-04	k: 1410	n:2030000
Cons ci ratio: 2.107225e-01	ci left: 1.524897e-04	ci right 1.888628e-04	k: 345	n:2030000
KS ci ratio: 1.167902e-02	ci left: 5.227120e-02	ci right 5.288574e-02	k: 106733	n:2030000
ACVR1B   2030000 perm   2328 sec   (872 perm/sec)   p_kst 5.257783e-02   p_cons 1.699507e-04   p_joint 6.945813e-04

Joint ci ratio: 1.039166e-01	ci left: 6.608296e-04	ci right 7.337372e-04	k: 1421	n:2040000
Cons ci ratio: 2.104187e-01	ci left: 1.522066e-04	ci right 1.884530e-04	k: 346	n:2040000
KS ci ratio: 1.165046e-02	ci left: 5.227108e-02	ci right 5.288411e-02	k: 107257	n:2040000
ACVR1B   2040000 perm   2348 sec   (869 perm/sec)   p_kst 5.257696e-02   p_cons 1.696078e-04   p_joint 6.965686e-04

Joint ci ratio: 1.036254e-01	ci left: 6.614072e-04	ci right 7.341616e-04	k: 1429	n:2050000
Cons ci ratio: 2.098149e-01	ci left: 1.523884e-04	ci right 1.885606e-04	k: 348	n:2050000
KS ci ratio: 1.162023e-02	ci left: 5.228702e-02	ci right 5.289863e-02	k: 107814	n:2050000
ACVR1B   2050000 perm   2368 sec   (866 perm/sec)   p_kst 5.259220e-02   p_cons 1.697561e-04   p_joint 6.970732e-04

Joint ci ratio: 1.034809e-01	ci left: 6.600879e-04	ci right 7.325898e-04	k: 1433	n:2060000
Cons ci ratio: 2.092162e-01	ci left: 1.525686e-04	ci right 1.886670e-04	k: 350	n:2060000
KS ci ratio: 1.159142e-02	ci left: 5.229264e-02	ci right 5.290279e-02	k: 108350	n:2060000
ACVR1B   2060000 perm   2389 sec   (862 perm/sec)   p_kst 5.259709e-02   p_cons 1.699029e-04   p_joint 6.956311e-04

Joint ci ratio: 1.030149e-01	ci left: 6.630171e-04	ci right 7.354930e-04	k: 1446	n:2070000
Cons ci ratio: 2.083278e-01	ci left: 1.532050e-04	ci right 1.892805e-04	k: 353	n:2070000
KS ci ratio: 1.156311e-02	ci left: 5.229580e-02	ci right 5.290449e-02	k: 108881	n:2070000
ACVR1B   2070000 perm   2409 sec   (859 perm/sec)   p_kst 5.259952e-02   p_cons 1.705314e-04   p_joint 6.985507e-04

Joint ci ratio: 1.028728e-01	ci left: 6.617031e-04	ci right 7.339295e-04	k: 1450	n:2080000
Cons ci ratio: 2.080342e-01	ci left: 1.529242e-04	ci right 1.888763e-04	k: 354	n:2080000
KS ci ratio: 1.153628e-02	ci left: 5.228790e-02	ci right 5.289508e-02	k: 109389	n:2080000
ACVR1B   2080000 perm   2430 sec   (856 perm/sec)   p_kst 5.259087e-02   p_cons 1.701923e-04   p_joint 6.971154e-04

Joint ci ratio: 1.026608e-01	ci left: 6.613341e-04	ci right 7.333625e-04	k: 1456	n:2090000
Cons ci ratio: 2.080343e-01	ci left: 1.521925e-04	ci right 1.879726e-04	k: 354	n:2090000
KS ci ratio: 1.150655e-02	ci left: 5.230680e-02	ci right 5.291262e-02	k: 109953	n:2090000
ACVR1B   2090000 perm   2451 sec   (853 perm/sec)   p_kst 5.260909e-02   p_cons 1.693780e-04   p_joint 6.966507e-04

Joint ci ratio: 1.023801e-01	ci left: 6.618967e-04	ci right 7.337774e-04	k: 1464	n:2100000
Cons ci ratio: 2.077419e-01	ci left: 1.519191e-04	ci right 1.875784e-04	k: 355	n:2100000
KS ci ratio: 1.147786e-02	ci left: 5.231840e-02	ci right 5.292283e-02	k: 110502	n:2100000
ACVR1B   2100000 perm   2472 sec   (850 perm/sec)   p_kst 5.262000e-02   p_cons 1.690476e-04   p_joint 6.971429e-04

Joint ci ratio: 1.023453e-01	ci left: 6.592215e-04	ci right 7.307859e-04	k: 1465	n:2110000
Cons ci ratio: 2.065845e-01	ci left: 1.529965e-04	ci right 1.886834e-04	k: 359	n:2110000
KS ci ratio: 1.145102e-02	ci left: 5.231571e-02	ci right 5.291869e-02	k: 111021	n:2110000
ACVR1B   2110000 perm   2493 sec   (846 perm/sec)   p_kst 5.261659e-02   p_cons 1.701422e-04   p_joint 6.943128e-04

Joint ci ratio: 1.022061e-01	ci left: 6.579505e-04	ci right 7.292739e-04	k: 1469	n:2120000
Cons ci ratio: 2.062982e-01	ci left: 1.527222e-04	ci right 1.882894e-04	k: 360	n:2120000
KS ci ratio: 1.142302e-02	ci left: 5.232481e-02	ci right 5.292641e-02	k: 111565	n:2120000
ACVR1B   2120000 perm   2514 sec   (843 perm/sec)   p_kst 5.262500e-02   p_cons 1.698113e-04   p_joint 6.929245e-04

Joint ci ratio: 1.018601e-01	ci left: 6.594366e-04	ci right 7.306646e-04	k: 1479	n:2130000
Cons ci ratio: 2.054462e-01	ci left: 1.533410e-04	ci right 1.888864e-04	k: 363	n:2130000
KS ci ratio: 1.139624e-02	ci left: 5.232493e-02	ci right 5.292511e-02	k: 112090	n:2130000
ACVR1B   2130000 perm   2535 sec   (840 perm/sec)   p_kst 5.262441e-02   p_cons 1.704225e-04   p_joint 6.943662e-04

Joint ci ratio: 1.015518e-01	ci left: 6.604538e-04	ci right 7.315629e-04	k: 1488	n:2140000
Cons ci ratio: 2.051646e-01	ci left: 1.530677e-04	ci right 1.884950e-04	k: 364	n:2140000
KS ci ratio: 1.136890e-02	ci left: 5.233157e-02	ci right 5.293038e-02	k: 112629	n:2140000
ACVR1B   2140000 perm   2556 sec   (837 perm/sec)   p_kst 5.263037e-02   p_cons 1.700935e-04   p_joint 6.953271e-04

Joint ci ratio: 1.014497e-01	ci left: 6.587418e-04	ci right 7.295910e-04	k: 1491	n:2150000
Cons ci ratio: 2.043266e-01	ci left: 1.536796e-04	ci right 1.890851e-04	k: 367	n:2150000
KS ci ratio: 1.134097e-02	ci left: 5.234512e-02	ci right 5.294260e-02	k: 113183	n:2150000
ACVR1B   2150000 perm   2578 sec   (834 perm/sec)   p_kst 5.264326e-02   p_cons 1.706977e-04   p_joint 6.934884e-04

Joint ci ratio: 1.010777e-01	ci left: 6.606557e-04	ci right 7.314348e-04	k: 1502	n:2160000
Cons ci ratio: 2.029523e-01	ci left: 1.551649e-04	ci right 1.906423e-04	k: 372	n:2160000
KS ci ratio: 1.131382e-02	ci left: 5.235346e-02	ci right 5.294960e-02	k: 113726	n:2160000
ACVR1B   2160000 perm   2599 sec   (831 perm/sec)   p_kst 5.265093e-02   p_cons 1.722222e-04   p_joint 6.953704e-04

Joint ci ratio: 1.008097e-01	ci left: 6.612048e-04	ci right 7.318438e-04	k: 1510	n:2170000
Cons ci ratio: 2.029524e-01	ci left: 1.544499e-04	ci right 1.897638e-04	k: 372	n:2170000
KS ci ratio: 1.128571e-02	ci left: 5.237183e-02	ci right 5.296669e-02	k: 114291	n:2170000
ACVR1B   2170000 perm   2621 sec   (828 perm/sec)   p_kst 5.266866e-02   p_cons 1.714286e-04   p_joint 6.958525e-04

Joint ci ratio: 1.007099e-01	ci left: 6.595132e-04	ci right 7.298975e-04	k: 1513	n:2180000
Cons ci ratio: 2.026809e-01	ci left: 1.541768e-04	ci right 1.893753e-04	k: 373	n:2180000
KS ci ratio: 1.125988e-02	ci left: 5.237174e-02	ci right 5.296523e-02	k: 114816	n:2180000
ACVR1B   2180000 perm   2642 sec   (825 perm/sec)   p_kst 5.266789e-02   p_cons 1.711009e-04   p_joint 6.940367e-04

Joint ci ratio: 1.005441e-01	ci left: 6.587273e-04	ci right 7.289052e-04	k: 1518	n:2190000
Cons ci ratio: 2.021412e-01	ci left: 1.543398e-04	ci right 1.894701e-04	k: 375	n:2190000
KS ci ratio: 1.123382e-02	ci left: 5.237530e-02	ci right 5.296744e-02	k: 115349	n:2190000
ACVR1B   2190000 perm   2664 sec   (822 perm/sec)   p_kst 5.267078e-02   p_cons 1.712329e-04   p_joint 6.931507e-04

Joint ci ratio: 1.003461e-01	ci left: 6.583919e-04	ci right 7.283878e-04	k: 1524	n:2200000
Cons ci ratio: 2.018729e-01	ci left: 1.540698e-04	ci right 1.890863e-04	k: 376	n:2200000
KS ci ratio: 1.120769e-02	ci left: 5.238109e-02	ci right 5.297191e-02	k: 115887	n:2200000
ACVR1B   2200000 perm   2685 sec   (819 perm/sec)   p_kst 5.267591e-02   p_cons 1.709091e-04   p_joint 6.927273e-04

Joint ci ratio: 1.001493e-01	ci left: 6.580596e-04	ci right 7.278749e-04	k: 1530	n:2210000
Cons ci ratio: 2.016058e-01	ci left: 1.538023e-04	ci right 1.887061e-04	k: 377	n:2210000
KS ci ratio: 1.118178e-02	ci left: 5.238638e-02	ci right 5.297588e-02	k: 116424	n:2210000
ACVR1B   2210000 perm   2707 sec   (816 perm/sec)   p_kst 5.268054e-02   p_cons 1.705882e-04   p_joint 6.923077e-04

Joint ci ratio: 1.010114e-01	ci left: 6.436780e-04	ci right 7.125903e-04	k: 1504	n:2220000
Cons ci ratio: 2.013396e-01	ci left: 1.535372e-04	ci right 1.883292e-04	k: 378	n:2220000
KS ci ratio: 1.115716e-02	ci left: 5.238173e-02	ci right 5.296988e-02	k: 116939	n:2220000
ACVR1B   2220000 perm   2728 sec   (814 perm/sec)   p_kst 5.267523e-02   p_cons 1.702703e-04   p_joint 6.774775e-04

Joint ci ratio: 1.006110e-01	ci left: 6.460371e-04	ci right 7.149115e-04	k: 1516	n:2230000
Cons ci ratio: 2.013397e-01	ci left: 1.528487e-04	ci right 1.874847e-04	k: 378	n:2230000
KS ci ratio: 1.113126e-02	ci left: 5.239011e-02	ci right 5.297697e-02	k: 117483	n:2230000
ACVR1B   2230000 perm   2750 sec   (811 perm/sec)   p_kst 5.268296e-02   p_cons 1.695067e-04   p_joint 6.798206e-04

Joint ci ratio: 1.008442e-01	ci left: 6.401066e-04	ci right 7.085164e-04	k: 1509	n:2240000
Cons ci ratio: 2.008106e-01	ci left: 1.530142e-04	ci right 1.875854e-04	k: 380	n:2240000
KS ci ratio: 1.110558e-02	ci left: 5.239796e-02	ci right 5.298355e-02	k: 118026	n:2240000
ACVR1B   2240000 perm   2772 sec   (808 perm/sec)   p_kst 5.269018e-02   p_cons 1.696429e-04   p_joint 6.736607e-04

Joint ci ratio: 1.007110e-01	ci left: 6.389946e-04	ci right 7.071900e-04	k: 1513	n:2250000
Cons ci ratio: 2.005476e-01	ci left: 1.527563e-04	ci right 1.872185e-04	k: 381	n:2250000
KS ci ratio: 1.108042e-02	ci left: 5.240264e-02	ci right 5.298695e-02	k: 118562	n:2250000
ACVR1B   2250000 perm   2794 sec   (805 perm/sec)   p_kst 5.269422e-02   p_cons 1.693333e-04   p_joint 6.724444e-04

Joint ci ratio: 1.005451e-01	ci left: 6.383239e-04	ci right 7.063289e-04	k: 1518	n:2260000
Cons ci ratio: 2.005477e-01	ci left: 1.520803e-04	ci right 1.863901e-04	k: 381	n:2260000
KS ci ratio: 1.105323e-02	ci left: 5.242714e-02	ci right 5.301029e-02	k: 119143	n:2260000
ACVR1B   2260000 perm   2816 sec   (803 perm/sec)   p_kst 5.271814e-02   p_cons 1.685841e-04   p_joint 6.716814e-04

Joint ci ratio: 1.001830e-01	ci left: 6.402362e-04	ci right 7.081847e-04	k: 1529	n:2270000
Cons ci ratio: 2.000247e-01	ci left: 1.522473e-04	ci right 1.864942e-04	k: 383	n:2270000
KS ci ratio: 1.102960e-02	ci left: 5.242112e-02	ci right 5.300293e-02	k: 119655	n:2270000
ACVR1B   2270000 perm   2838 sec   (800 perm/sec)   p_kst 5.271145e-02   p_cons 1.687225e-04   p_joint 6.735683e-04

Joint ci ratio: 1.004462e-01	ci left: 6.340073e-04	ci right 7.014820e-04	k: 1521	n:2280000
Cons ci ratio: 1.995058e-01	ci left: 1.524128e-04	ci right 1.865972e-04	k: 385	n:2280000
KS ci ratio: 1.100467e-02	ci left: 5.242826e-02	ci right 5.300884e-02	k: 120197	n:2280000
ACVR1B   2280000 perm   2860 sec   (797 perm/sec)   p_kst 5.271798e-02   p_cons 1.688596e-04   p_joint 6.671053e-04

Joint ci ratio: 1.004794e-01	ci left: 6.308129e-04	ci right 6.979712e-04	k: 1520	n:2290000
Cons ci ratio: 1.987350e-01	ci left: 1.529920e-04	ci right 1.871576e-04	k: 388	n:2290000
KS ci ratio: 1.097942e-02	ci left: 5.243971e-02	ci right 5.301907e-02	k: 120749	n:2290000
ACVR1B   2290000 perm   2882 sec   (795 perm/sec)   p_kst 5.272882e-02   p_cons 1.694323e-04   p_joint 6.637555e-04

Joint ci ratio: 1.002490e-01	ci left: 6.310373e-04	ci right 6.980563e-04	k: 1527	n:2300000
Cons ci ratio: 1.987350e-01	ci left: 1.523268e-04	ci right 1.863439e-04	k: 388	n:2300000
KS ci ratio: 1.095535e-02	ci left: 5.244194e-02	ci right 5.302005e-02	k: 121280	n:2300000
ACVR1B   2300000 perm   2905 sec   (792 perm/sec)   p_kst 5.273043e-02   p_cons 1.686957e-04   p_joint 6.639130e-04

Joint ci ratio: 1.000528e-01	ci left: 6.308379e-04	ci right 6.976969e-04	k: 1533	n:2310000
Cons ci ratio: 1.982261e-01	ci left: 1.524902e-04	ci right 1.864460e-04	k: 390	n:2310000
KS ci ratio: 1.093087e-02	ci left: 5.244935e-02	ci right 5.302623e-02	k: 121823	n:2310000
ACVR1B   2310000 perm   2927 sec   (789 perm/sec)   p_kst 5.273723e-02   p_cons 1.688312e-04   p_joint 6.636364e-04

Joint ci ratio: 9.985767e-02	ci left: 6.306403e-04	ci right 6.973404e-04	k: 1539	n:2320000
Cons ci ratio: 1.979731e-01	ci left: 1.522425e-04	ci right 1.860947e-04	k: 391	n:2320000
KS ci ratio: 1.090664e-02	ci left: 5.245583e-02	ci right 5.303150e-02	k: 122364	n:2320000
ACVR1B   2320000 perm   2950 sec   (786 perm/sec)   p_kst 5.274310e-02   p_cons 1.685345e-04   p_joint 6.633621e-04

Joint ci ratio: 1.002166e-01	ci left: 6.233307e-04	ci right 6.895086e-04	k: 1528	n:2330000
Cons ci ratio: 1.972198e-01	ci left: 1.528130e-04	ci right 1.866472e-04	k: 394	n:2330000
KS ci ratio: 1.088211e-02	ci left: 5.246653e-02	ci right 5.304102e-02	k: 122915	n:2330000
ACVR1B   2330000 perm   2973 sec   (784 perm/sec)   p_kst 5.275322e-02   p_cons 1.690987e-04   p_joint 6.557940e-04

Joint ci ratio: 1.000858e-01	ci left: 6.223334e-04	ci right 6.883142e-04	k: 1532	n:2340000
Cons ci ratio: 1.969707e-01	ci left: 1.525662e-04	ci right 1.862980e-04	k: 395	n:2340000
KS ci ratio: 1.085816e-02	ci left: 5.247331e-02	ci right 5.304660e-02	k: 123457	n:2340000
ACVR1B   2340000 perm   2996 sec   (781 perm/sec)   p_kst 5.275940e-02   p_cons 1.688034e-04   p_joint 6.547009e-04

Joint ci ratio: 1.009797e-01	ci left: 6.084845e-04	ci right 6.736073e-04	k: 1505	n:2350000
Cons ci ratio: 1.967225e-01	ci left: 1.523216e-04	ci right 1.859517e-04	k: 396	n:2350000
KS ci ratio: 1.083373e-02	ci left: 5.248598e-02	ci right 5.305811e-02	k: 124013	n:2350000
ACVR1B   2350000 perm   3018 sec   (779 perm/sec)   p_kst 5.277149e-02   p_cons 1.685106e-04   p_joint 6.404255e-04

Joint ci ratio: 9.394014e-02	ci left: 7.026467e-04	ci right 7.723166e-04	k: 1739	n:2360000
Cons ci ratio: 1.959833e-01	ci left: 1.528848e-04	ci right 1.864974e-04	k: 399	n:2360000
KS ci ratio: 1.081170e-02	ci left: 5.247783e-02	ci right 5.304870e-02	k: 124520	n:2360000
ACVR1B   2360000 perm   3041 sec   (776 perm/sec)   p_kst 5.276271e-02   p_cons 1.690678e-04   p_joint 7.368644e-04

Joint ci ratio: 9.377862e-02	ci left: 7.021541e-04	ci right 7.716490e-04	k: 1745	n:2370000
Cons ci ratio: 1.957389e-01	ci left: 1.526410e-04	ci right 1.861531e-04	k: 400	n:2370000
KS ci ratio: 1.078921e-02	ci left: 5.247522e-02	ci right 5.304486e-02	k: 125040	n:2370000
ACVR1B   2370000 perm   3065 sec   (773 perm/sec)   p_kst 5.275949e-02   p_cons 1.687764e-04   p_joint 7.362869e-04

Joint ci ratio: 9.353782e-02	ci left: 7.028969e-04	ci right 7.722768e-04	k: 1754	n:2380000
Cons ci ratio: 1.954953e-01	ci left: 1.523992e-04	ci right 1.858117e-04	k: 401	n:2380000
KS ci ratio: 1.076800e-02	ci left: 5.246215e-02	ci right 5.303053e-02	k: 125535	n:2380000
ACVR1B   2380000 perm   3088 sec   (771 perm/sec)   p_kst 5.274580e-02   p_cons 1.684874e-04   p_joint 7.369748e-04

Joint ci ratio: 9.329886e-02	ci left: 7.036336e-04	ci right 7.728991e-04	k: 1763	n:2390000
Cons ci ratio: 1.954953e-01	ci left: 1.517616e-04	ci right 1.850342e-04	k: 401	n:2390000
KS ci ratio: 1.074587e-02	ci left: 5.245880e-02	ci right 5.302597e-02	k: 126053	n:2390000
ACVR1B   2390000 perm   3112 sec   (768 perm/sec)   p_kst 5.274184e-02   p_cons 1.677824e-04   p_joint 7.376569e-04

Joint ci ratio: 9.377905e-02	ci left: 6.933771e-04	ci right 7.620035e-04	k: 1745	n:2400000
Cons ci ratio: 1.950108e-01	ci left: 1.519218e-04	ci right 1.851372e-04	k: 403	n:2400000
KS ci ratio: 1.072393e-02	ci left: 5.245506e-02	ci right 5.302102e-02	k: 126570	n:2400000
ACVR1B   2400000 perm   3135 sec   (766 perm/sec)   p_kst 5.273750e-02   p_cons 1.679167e-04   p_joint 7.270833e-04

Joint ci ratio: 9.523682e-02	ci left: 6.690276e-04	ci right 7.363309e-04	k: 1692	n:2410000
Cons ci ratio: 1.945299e-01	ci left: 1.520809e-04	ci right 1.852393e-04	k: 405	n:2410000
KS ci ratio: 1.070185e-02	ci left: 5.245383e-02	ci right 5.301861e-02	k: 127093	n:2410000
ACVR1B   2410000 perm   3158 sec   (763 perm/sec)   p_kst 5.273568e-02   p_cons 1.680498e-04   p_joint 7.020747e-04

Joint ci ratio: 9.549129e-02	ci left: 6.626326e-04	ci right 7.294806e-04	k: 1683	n:2420000
Cons ci ratio: 1.938151e-01	ci left: 1.526318e-04	ci right 1.857737e-04	k: 408	n:2420000
KS ci ratio: 1.067828e-02	ci left: 5.246787e-02	ci right 5.303155e-02	k: 127653	n:2420000
ACVR1B   2420000 perm   3181 sec   (761 perm/sec)   p_kst 5.274917e-02   p_cons 1.685950e-04   p_joint 6.954545e-04

Joint ci ratio: 9.532165e-02	ci left: 6.623160e-04	ci right 7.290067e-04	k: 1689	n:2430000
Cons ci ratio: 1.938152e-01	ci left: 1.520037e-04	ci right 1.850092e-04	k: 408	n:2430000
KS ci ratio: 1.065639e-02	ci left: 5.246743e-02	ci right 5.302994e-02	k: 128178	n:2430000
ACVR1B   2430000 perm   3204 sec   (758 perm/sec)   p_kst 5.274815e-02   p_cons 1.679012e-04   p_joint 6.950617e-04

Joint ci ratio: 9.512485e-02	ci left: 6.624021e-04	ci right 7.289561e-04	k: 1696	n:2440000
Cons ci ratio: 1.938152e-01	ci left: 1.513807e-04	ci right 1.842510e-04	k: 408	n:2440000
KS ci ratio: 1.063451e-02	ci left: 5.246821e-02	ci right 5.302957e-02	k: 128706	n:2440000
ACVR1B   2440000 perm   3228 sec   (756 perm/sec)   p_kst 5.274836e-02   p_cons 1.672131e-04   p_joint 6.950820e-04

Joint ci ratio: 9.597771e-02	ci left: 6.477459e-04	ci right 7.134436e-04	k: 1666	n:2450000
Cons ci ratio: 1.933431e-01	ci left: 1.515396e-04	ci right 1.843548e-04	k: 410	n:2450000
KS ci ratio: 1.061237e-02	ci left: 5.247266e-02	ci right 5.303289e-02	k: 129243	n:2450000
ACVR1B   2450000 perm   3251 sec   (754 perm/sec)   p_kst 5.275224e-02   p_cons 1.673469e-04   p_joint 6.800000e-04

Joint ci ratio: 9.563401e-02	ci left: 6.498740e-04	ci right 7.155383e-04	k: 1678	n:2460000
Cons ci ratio: 1.921775e-01	ci left: 1.528581e-04	ci right 1.857359e-04	k: 415	n:2460000
KS ci ratio: 1.059067e-02	ci left: 5.247423e-02	ci right 5.303332e-02	k: 129773	n:2460000
ACVR1B   2460000 perm   3275 sec   (751 perm/sec)   p_kst 5.275325e-02   p_cons 1.686992e-04   p_joint 6.821138e-04

Joint ci ratio: 9.647147e-02	ci left: 6.357838e-04	ci right 7.006188e-04	k: 1649	n:2470000
Cons ci ratio: 1.919470e-01	ci left: 1.526246e-04	ci right 1.854082e-04	k: 416	n:2470000
KS ci ratio: 1.056919e-02	ci left: 5.247499e-02	ci right 5.303295e-02	k: 130301	n:2470000
ACVR1B   2470000 perm   3299 sec   (749 perm/sec)   p_kst 5.275344e-02   p_cons 1.684211e-04   p_joint 6.676113e-04

Joint ci ratio: 9.626748e-02	ci left: 6.359747e-04	ci right 7.006843e-04	k: 1656	n:2480000
Cons ci ratio: 1.919470e-01	ci left: 1.520092e-04	ci right 1.846606e-04	k: 416	n:2480000
KS ci ratio: 1.054674e-02	ci left: 5.248619e-02	ci right 5.304308e-02	k: 130855	n:2480000
ACVR1B   2480000 perm   3323 sec   (746 perm/sec)   p_kst 5.276411e-02   p_cons 1.677419e-04   p_joint 6.677419e-04

Joint ci ratio: 9.600705e-02	ci left: 6.369482e-04	ci right 7.015716e-04	k: 1665	n:2490000
Cons ci ratio: 1.919471e-01	ci left: 1.513987e-04	ci right 1.839190e-04	k: 416	n:2490000
KS ci ratio: 1.052586e-02	ci left: 5.248369e-02	ci right 5.303944e-02	k: 131375	n:2490000
ACVR1B   2490000 perm   3346 sec   (744 perm/sec)   p_kst 5.276104e-02   p_cons 1.670683e-04   p_joint 6.686747e-04

Joint ci ratio: 9.569158e-02	ci left: 6.386950e-04	ci right 7.032707e-04	k: 1676	n:2500000
Cons ci ratio: 1.912603e-01	ci left: 1.519355e-04	ci right 1.844408e-04	k: 419	n:2500000
KS ci ratio: 1.050502e-02	ci left: 5.248201e-02	ci right 5.303663e-02	k: 131897	n:2500000
ACVR1B   2500000 perm   3370 sec   (742 perm/sec)   p_kst 5.275880e-02   p_cons 1.676000e-04   p_joint 6.704000e-04

Joint ci ratio: 9.589219e-02	ci left: 6.334282e-04	ci right 6.976133e-04	k: 1669	n:2510000
Cons ci ratio: 1.905808e-01	ci left: 1.524683e-04	ci right 1.849583e-04	k: 422	n:2510000
KS ci ratio: 1.048368e-02	ci left: 5.248630e-02	ci right 5.303983e-02	k: 132434	n:2510000
ACVR1B   2510000 perm   3395 sec   (739 perm/sec)   p_kst 5.276255e-02   p_cons 1.681275e-04   p_joint 6.649402e-04

Joint ci ratio: 9.583491e-02	ci left: 6.316892e-04	ci right 6.956577e-04	k: 1671	n:2520000
Cons ci ratio: 1.905809e-01	ci left: 1.518633e-04	ci right 1.842243e-04	k: 422	n:2520000
KS ci ratio: 1.046364e-02	ci left: 5.247947e-02	ci right 5.303187e-02	k: 132943	n:2520000
ACVR1B   2520000 perm   3419 sec   (737 perm/sec)   p_kst 5.275516e-02   p_cons 1.674603e-04   p_joint 6.630952e-04

Joint ci ratio: 9.563492e-02	ci left: 6.318930e-04	ci right 6.957411e-04	k: 1678	n:2530000
Cons ci ratio: 1.901319e-01	ci left: 1.520159e-04	ci right 1.843243e-04	k: 424	n:2530000
KS ci ratio: 1.044251e-02	ci left: 5.248414e-02	ci right 5.303546e-02	k: 133481	n:2530000
ACVR1B   2530000 perm   3444 sec   (735 perm/sec)   p_kst 5.275929e-02   p_cons 1.675889e-04   p_joint 6.632411e-04

Joint ci ratio: 9.540786e-02	ci left: 6.324796e-04	ci right 6.962268e-04	k: 1686	n:2540000
Cons ci ratio: 1.892434e-01	ci left: 1.529174e-04	ci right 1.852481e-04	k: 428	n:2540000
KS ci ratio: 1.042150e-02	ci left: 5.248877e-02	ci right 5.303903e-02	k: 134019	n:2540000
ACVR1B   2540000 perm   3468 sec   (732 perm/sec)   p_kst 5.276339e-02   p_cons 1.685039e-04   p_joint 6.637795e-04

Joint ci ratio: 9.507023e-02	ci left: 6.345931e-04	ci right 6.983144e-04	k: 1698	n:2550000
Cons ci ratio: 1.885851e-01	ci left: 1.534386e-04	ci right 1.857537e-04	k: 431	n:2550000
KS ci ratio: 1.040124e-02	ci left: 5.248749e-02	ci right 5.303666e-02	k: 134542	n:2550000
ACVR1B   2550000 perm   3492 sec   (730 perm/sec)   p_kst 5.276157e-02   p_cons 1.690196e-04   p_joint 6.658824e-04

Joint ci ratio: 9.481938e-02	ci left: 6.355464e-04	ci right 6.991856e-04	k: 1707	n:2560000
Cons ci ratio: 1.881500e-01	ci left: 1.535836e-04	ci right 1.858461e-04	k: 433	n:2560000
KS ci ratio: 1.038129e-02	ci left: 5.248428e-02	ci right 5.303236e-02	k: 135060	n:2560000
ACVR1B   2560000 perm   3517 sec   (728 perm/sec)   p_kst 5.275781e-02   p_cons 1.691406e-04   p_joint 6.667969e-04

Joint ci ratio: 9.451544e-02	ci left: 6.372523e-04	ci right 7.008465e-04	k: 1718	n:2570000
Cons ci ratio: 1.877180e-01	ci left: 1.537276e-04	ci right 1.859378e-04	k: 435	n:2570000
KS ci ratio: 1.036138e-02	ci left: 5.248187e-02	ci right 5.302887e-02	k: 135580	n:2570000
ACVR1B   2570000 perm   3542 sec   (726 perm/sec)   p_kst 5.275486e-02   p_cons 1.692607e-04   p_joint 6.684825e-04

Joint ci ratio: 9.437831e-02	ci left: 6.366745e-04	ci right 7.001138e-04	k: 1723	n:2580000
Cons ci ratio: 1.875031e-01	ci left: 1.535012e-04	ci right 1.856228e-04	k: 436	n:2580000
KS ci ratio: 1.034255e-02	ci left: 5.247020e-02	ci right 5.301607e-02	k: 136076	n:2580000
ACVR1B   2580000 perm   3567 sec   (723 perm/sec)   p_kst 5.274264e-02   p_cons 1.689922e-04   p_joint 6.678295e-04

Joint ci ratio: 9.402436e-02	ci left: 6.391174e-04	ci right 7.025481e-04	k: 1736	n:2590000
Cons ci ratio: 1.866507e-01	ci left: 1.543806e-04	ci right 1.865228e-04	k: 440	n:2590000
KS ci ratio: 1.032310e-02	ci left: 5.246556e-02	ci right 5.301035e-02	k: 136590	n:2590000
ACVR1B   2590000 perm   3592 sec   (721 perm/sec)   p_kst 5.273745e-02   p_cons 1.698842e-04   p_joint 6.702703e-04

Joint ci ratio: 9.378168e-02	ci left: 6.400396e-04	ci right 7.033888e-04	k: 1745	n:2600000
Cons ci ratio: 1.866508e-01	ci left: 1.537868e-04	ci right 1.858054e-04	k: 440	n:2600000
KS ci ratio: 1.030300e-02	ci left: 5.246824e-02	ci right 5.301199e-02	k: 137123	n:2600000
ACVR1B   2600000 perm   3617 sec   (719 perm/sec)   p_kst 5.273962e-02   p_cons 1.692308e-04   p_joint 6.711538e-04

Joint ci ratio: 9.362097e-02	ci left: 6.398323e-04	ci right 7.030465e-04	k: 1751	n:2610000
Cons ci ratio: 1.864396e-01	ci left: 1.535628e-04	ci right 1.854945e-04	k: 441	n:2610000
KS ci ratio: 1.028299e-02	ci left: 5.247128e-02	ci right 5.301400e-02	k: 137657	n:2610000
ACVR1B   2610000 perm   3643 sec   (716 perm/sec)   p_kst 5.274215e-02   p_cons 1.689655e-04   p_joint 6.708812e-04

Joint ci ratio: 9.338138e-02	ci left: 6.407450e-04	ci right 7.038786e-04	k: 1760	n:2620000
Cons ci ratio: 1.862290e-01	ci left: 1.533406e-04	ci right 1.851860e-04	k: 442	n:2620000
KS ci ratio: 1.026352e-02	ci left: 5.247011e-02	ci right 5.301179e-02	k: 138180	n:2620000
ACVR1B   2620000 perm   3668 sec   (714 perm/sec)   p_kst 5.274046e-02   p_cons 1.687023e-04   p_joint 6.717557e-04

Joint ci ratio: 9.316997e-02	ci left: 6.412796e-04	ci right 7.043150e-04	k: 1768	n:2630000
Cons ci ratio: 1.862291e-01	ci left: 1.527575e-04	ci right 1.844819e-04	k: 442	n:2630000
KS ci ratio: 1.024447e-02	ci left: 5.246592e-02	ci right 5.300655e-02	k: 138695	n:2630000
ACVR1B   2630000 perm   3693 sec   (712 perm/sec)   p_kst 5.273574e-02   p_cons 1.680608e-04   p_joint 6.722433e-04

Joint ci ratio: 9.317009e-02	ci left: 6.388504e-04	ci right 7.016472e-04	k: 1768	n:2640000
Cons ci ratio: 1.862292e-01	ci left: 1.521789e-04	ci right 1.837831e-04	k: 442	n:2640000
KS ci ratio: 1.022475e-02	ci left: 5.246932e-02	ci right 5.300893e-02	k: 139230	n:2640000
ACVR1B   2640000 perm   3719 sec   (710 perm/sec)   p_kst 5.273864e-02   p_cons 1.674242e-04   p_joint 6.696970e-04

Joint ci ratio: 9.301250e-02	ci left: 6.386511e-04	ci right 7.013163e-04	k: 1774	n:2650000
Cons ci ratio: 1.858102e-01	ci left: 1.523242e-04	ci right 1.838794e-04	k: 444	n:2650000
KS ci ratio: 1.020419e-02	ci left: 5.248211e-02	ci right 5.302076e-02	k: 139790	n:2650000
ACVR1B   2650000 perm   3744 sec   (708 perm/sec)   p_kst 5.275094e-02   p_cons 1.675472e-04   p_joint 6.694340e-04

Joint ci ratio: 9.298641e-02	ci left: 6.366173e-04	ci right 6.990645e-04	k: 1775	n:2660000
Cons ci ratio: 1.856018e-01	ci left: 1.521100e-04	ci right 1.835815e-04	k: 445	n:2660000
KS ci ratio: 1.018340e-02	ci left: 5.249817e-02	ci right 5.303588e-02	k: 140359	n:2660000
ACVR1B   2660000 perm   3770 sec   (706 perm/sec)   p_kst 5.276654e-02   p_cons 1.672932e-04   p_joint 6.672932e-04

Joint ci ratio: 9.282975e-02	ci left: 6.364280e-04	ci right 6.987456e-04	k: 1781	n:2670000
Cons ci ratio: 1.847750e-01	ci left: 1.529690e-04	ci right 1.844614e-04	k: 449	n:2670000
KS ci ratio: 1.016464e-02	ci left: 5.249544e-02	ci right 5.303212e-02	k: 140878	n:2670000
ACVR1B   2670000 perm   3795 sec   (704 perm/sec)   p_kst 5.276330e-02   p_cons 1.681648e-04   p_joint 6.670412e-04

Joint ci ratio: 9.399835e-02	ci left: 6.180186e-04	ci right 6.793374e-04	k: 1737	n:2680000
Cons ci ratio: 1.841621e-01	ci left: 1.534659e-04	ci right 1.849442e-04	k: 452	n:2680000
KS ci ratio: 1.014595e-02	ci left: 5.249310e-02	ci right 5.302877e-02	k: 141398	n:2680000
ACVR1B   2680000 perm   3822 sec   (701 perm/sec)   p_kst 5.276045e-02   p_cons 1.686567e-04   p_joint 6.481343e-04

Joint ci ratio: 9.380962e-02	ci left: 6.182622e-04	ci right 6.794753e-04	k: 1744	n:2690000
Cons ci ratio: 1.841621e-01	ci left: 1.528954e-04	ci right 1.842566e-04	k: 452	n:2690000
KS ci ratio: 1.012792e-02	ci left: 5.248521e-02	ci right 5.301984e-02	k: 141903	n:2690000
ACVR1B   2690000 perm   3848 sec   (699 perm/sec)   p_kst 5.275204e-02   p_cons 1.680297e-04   p_joint 6.483271e-04

Joint ci ratio: 9.473781e-02	ci left: 6.036765e-04	ci right 6.640696e-04	k: 1710	n:2700000
Cons ci ratio: 1.835553e-01	ci left: 1.533891e-04	ci right 1.847364e-04	k: 455	n:2700000
KS ci ratio: 1.010977e-02	ci left: 5.247960e-02	ci right 5.301321e-02	k: 142414	n:2700000
ACVR1B   2700000 perm   3873 sec   (697 perm/sec)   p_kst 5.274593e-02   p_cons 1.685185e-04   p_joint 6.333333e-04

Joint ci ratio: 9.462730e-02	ci left: 6.028899e-04	ci right 6.631301e-04	k: 1714	n:2710000
Cons ci ratio: 1.831541e-01	ci left: 1.535273e-04	ci right 1.848266e-04	k: 457	n:2710000
KS ci ratio: 1.009056e-02	ci left: 5.248544e-02	ci right 5.301810e-02	k: 142956	n:2710000
ACVR1B   2710000 perm   3899 sec   (695 perm/sec)   p_kst 5.275129e-02   p_cons 1.686347e-04   p_joint 6.324723e-04

Joint ci ratio: 9.451718e-02	ci left: 6.021092e-04	ci right 6.621975e-04	k: 1718	n:2720000
Cons ci ratio: 1.827555e-01	ci left: 1.536644e-04	ci right 1.849160e-04	k: 459	n:2720000
KS ci ratio: 1.007298e-02	ci left: 5.247621e-02	ci right 5.300783e-02	k: 143457	n:2720000
ACVR1B   2720000 perm   3925 sec   (693 perm/sec)   p_kst 5.274154e-02   p_cons 1.687500e-04   p_joint 6.316176e-04

Joint ci ratio: 9.490479e-02	ci left: 5.948968e-04	ci right 6.545223e-04	k: 1704	n:2730000
Cons ci ratio: 1.823594e-01	ci left: 1.538007e-04	ci right 1.850047e-04	k: 461	n:2730000
KS ci ratio: 1.005382e-02	ci left: 5.248349e-02	ci right 5.301417e-02	k: 144003	n:2730000
ACVR1B   2730000 perm   3952 sec   (691 perm/sec)   p_kst 5.274835e-02   p_cons 1.688645e-04   p_joint 6.241758e-04

Joint ci ratio: 9.462763e-02	ci left: 5.962888e-04	ci right 6.558696e-04	k: 1714	n:2740000
Cons ci ratio: 1.817702e-01	ci left: 1.542844e-04	ci right 1.854742e-04	k: 464	n:2740000
KS ci ratio: 1.003566e-02	ci left: 5.248197e-02	ci right 5.301167e-02	k: 144525	n:2740000
ACVR1B   2740000 perm   3978 sec   (689 perm/sec)   p_kst 5.274635e-02   p_cons 1.693431e-04   p_joint 6.255474e-04

Joint ci ratio: 9.440766e-02	ci left: 5.969609e-04	ci right 6.564625e-04	k: 1722	n:2750000
Cons ci ratio: 1.813805e-01	ci left: 1.544176e-04	ci right 1.855600e-04	k: 466	n:2750000
KS ci ratio: 1.001665e-02	ci left: 5.248990e-02	ci right 5.301868e-02	k: 145073	n:2750000
ACVR1B   2750000 perm   4005 sec   (687 perm/sec)   p_kst 5.275382e-02   p_cons 1.694545e-04   p_joint 6.261818e-04

Joint ci ratio: 9.432564e-02	ci left: 5.958592e-04	ci right 6.551966e-04	k: 1725	n:2760000
Cons ci ratio: 1.813806e-01	ci left: 1.538581e-04	ci right 1.848877e-04	k: 466	n:2760000
KS ci ratio: 9.997820e-03	ci left: 5.249705e-02	ci right 5.302490e-02	k: 145619	n:2760000
ACVR1B   2760000 perm   4031 sec   (685 perm/sec)   p_kst 5.276051e-02   p_cons 1.688406e-04   p_joint 6.250000e-04

Joint ci ratio: 9.418933e-02	ci left: 5.954706e-04	ci right 6.546789e-04	k: 1730	n:2770000
Cons ci ratio: 1.811867e-01	ci left: 1.536473e-04	ci right 1.845976e-04	k: 467	n:2770000
KS ci ratio: 9.979238e-03	ci left: 5.250271e-02	ci right 5.302963e-02	k: 146161	n:2770000
ACVR1B   2770000 perm   4058 sec   (683 perm/sec)   p_kst 5.276570e-02   p_cons 1.685921e-04   p_joint 6.245487e-04

Joint ci ratio: 9.408073e-02	ci left: 5.947336e-04	ci right 6.537967e-04	k: 1734	n:2780000
Cons ci ratio: 1.811868e-01	ci left: 1.530946e-04	ci right 1.839336e-04	k: 467	n:2780000
KS ci ratio: 9.962301e-03	ci left: 5.249290e-02	ci right 5.301882e-02	k: 146660	n:2780000
ACVR1B   2780000 perm   4084 sec   (681 perm/sec)   p_kst 5.275540e-02   p_cons 1.679856e-04   p_joint 6.237410e-04

Joint ci ratio: 9.383762e-02	ci left: 5.957520e-04	ci right 6.547549e-04	k: 1743	n:2790000
Cons ci ratio: 1.811868e-01	ci left: 1.525458e-04	ci right 1.832744e-04	k: 467	n:2790000
KS ci ratio: 9.944237e-03	ci left: 5.249532e-02	ci right 5.302030e-02	k: 147193	n:2790000
ACVR1B   2790000 perm   4111 sec   (679 perm/sec)   p_kst 5.275735e-02   p_cons 1.673835e-04   p_joint 6.247312e-04

Joint ci ratio: 9.367662e-02	ci left: 5.957169e-04	ci right 6.546095e-04	k: 1749	n:2800000
Cons ci ratio: 1.811869e-01	ci left: 1.520010e-04	ci right 1.826198e-04	k: 467	n:2800000
KS ci ratio: 9.926059e-03	ci left: 5.249986e-02	ci right 5.302392e-02	k: 147732	n:2800000
ACVR1B   2800000 perm   4138 sec   (677 perm/sec)   p_kst 5.276143e-02   p_cons 1.667857e-04   p_joint 6.246429e-04

Joint ci ratio: 9.351645e-02	ci left: 5.956822e-04	ci right 6.544652e-04	k: 1755	n:2810000
Cons ci ratio: 1.811869e-01	ci left: 1.514601e-04	ci right 1.819699e-04	k: 467	n:2810000
KS ci ratio: 9.908050e-03	ci left: 5.250366e-02	ci right 5.302680e-02	k: 148269	n:2810000
ACVR1B   2810000 perm   4165 sec   (675 perm/sec)   p_kst 5.276477e-02   p_cons 1.661922e-04   p_joint 6.245552e-04

Joint ci ratio: 9.327767e-02	ci left: 5.966868e-04	ci right 6.554104e-04	k: 1764	n:2820000
Cons ci ratio: 1.804175e-01	ci left: 1.522772e-04	ci right 1.828072e-04	k: 471	n:2820000
KS ci ratio: 9.889613e-03	ci left: 5.251274e-02	ci right 5.303499e-02	k: 148821	n:2820000
ACVR1B   2820000 perm   4192 sec   (673 perm/sec)   p_kst 5.277340e-02   p_cons 1.670213e-04   p_joint 6.255319e-04

Joint ci ratio: 9.322494e-02	ci left: 5.952686e-04	ci right 6.538176e-04	k: 1766	n:2830000
Cons ci ratio: 1.804175e-01	ci left: 1.517392e-04	ci right 1.821613e-04	k: 471	n:2830000
KS ci ratio: 9.872499e-03	ci left: 5.250941e-02	ci right 5.303073e-02	k: 149338	n:2830000
ACVR1B   2830000 perm   4220 sec   (671 perm/sec)   p_kst 5.276961e-02   p_cons 1.664311e-04   p_joint 6.240283e-04

Joint ci ratio: 9.306706e-02	ci left: 5.952360e-04	ci right 6.536773e-04	k: 1772	n:2840000
Cons ci ratio: 1.798469e-01	ci left: 1.522136e-04	ci right 1.826238e-04	k: 474	n:2840000
KS ci ratio: 9.855370e-03	ci left: 5.250717e-02	ci right 5.302755e-02	k: 149858	n:2840000
ACVR1B   2840000 perm   4247 sec   (669 perm/sec)   p_kst 5.276690e-02   p_cons 1.669014e-04   p_joint 6.239437e-04

Joint ci ratio: 9.333090e-02	ci left: 5.897204e-04	ci right 6.477933e-04	k: 1762	n:2850000
Cons ci ratio: 1.796579e-01	ci left: 1.520146e-04	ci right 1.823496e-04	k: 475	n:2850000
KS ci ratio: 9.837639e-03	ci left: 5.251194e-02	ci right 5.303143e-02	k: 150398	n:2850000
ACVR1B   2850000 perm   4275 sec   (667 perm/sec)   p_kst 5.277123e-02   p_cons 1.666667e-04   p_joint 6.182456e-04

Joint ci ratio: 9.317249e-02	ci left: 5.897074e-04	ci right 6.476751e-04	k: 1768	n:2860000
Cons ci ratio: 1.783511e-01	ci left: 1.538210e-04	ci right 1.842691e-04	k: 482	n:2860000
KS ci ratio: 9.820484e-03	ci left: 5.251179e-02	ci right 5.303037e-02	k: 150924	n:2860000
ACVR1B   2860000 perm   4303 sec   (665 perm/sec)   p_kst 5.277063e-02   p_cons 1.685315e-04   p_joint 6.181818e-04

Joint ci ratio: 9.296250e-02	ci left: 5.903753e-04	ci right 6.482707e-04	k: 1776	n:2870000
Cons ci ratio: 1.781668e-01	ci left: 1.536179e-04	ci right 1.839910e-04	k: 483	n:2870000
KS ci ratio: 9.803829e-03	ci left: 5.250748e-02	ci right 5.302513e-02	k: 151438	n:2870000
ACVR1B   2870000 perm   4330 sec   (663 perm/sec)   p_kst 5.276585e-02   p_cons 1.682927e-04   p_joint 6.188153e-04

Joint ci ratio: 9.277992e-02	ci left: 5.906995e-04	ci right 6.485067e-04	k: 1783	n:2880000
Cons ci ratio: 1.781668e-01	ci left: 1.530845e-04	ci right 1.833522e-04	k: 483	n:2880000
KS ci ratio: 9.785389e-03	ci left: 5.252225e-02	ci right 5.303907e-02	k: 152007	n:2880000
ACVR1B   2880000 perm   4360 sec   (661 perm/sec)   p_kst 5.278021e-02   p_cons 1.677083e-04   p_joint 6.190972e-04

Joint ci ratio: 9.262430e-02	ci left: 5.906835e-04	ci right 6.483870e-04	k: 1789	n:2890000
Cons ci ratio: 1.777998e-01	ci left: 1.532160e-04	ci right 1.834406e-04	k: 485	n:2890000
KS ci ratio: 9.767795e-03	ci left: 5.252932e-02	ci right 5.304527e-02	k: 152554	n:2890000
ACVR1B   2890000 perm   4388 sec   (659 perm/sec)   p_kst 5.278685e-02   p_cons 1.678201e-04   p_joint 6.190311e-04

Joint ci ratio: 9.487869e-02	ci left: 5.603597e-04	ci right 6.165073e-04	k: 1705	n:2900000
Cons ci ratio: 1.774351e-01	ci left: 1.533467e-04	ci right 1.835283e-04	k: 487	n:2900000
KS ci ratio: 9.751776e-03	ci left: 5.252121e-02	ci right 5.303623e-02	k: 153057	n:2900000
ACVR1B   2900000 perm   4415 sec   (657 perm/sec)   p_kst 5.277828e-02   p_cons 1.679310e-04   p_joint 5.879310e-04

Joint ci ratio: 9.558212e-02	ci left: 5.500475e-04	ci right 6.055933e-04	k: 1680	n:2910000
Cons ci ratio: 1.770726e-01	ci left: 1.534765e-04	ci right 1.836154e-04	k: 489	n:2910000
KS ci ratio: 9.736137e-03	ci left: 5.251007e-02	ci right 5.302415e-02	k: 153551	n:2910000
ACVR1B   2910000 perm   4442 sec   (655 perm/sec)   p_kst 5.276667e-02   p_cons 1.680412e-04   p_joint 5.773196e-04

Joint ci ratio: 9.635965e-02	ci left: 5.391390e-04	ci right 5.940511e-04	k: 1653	n:2920000
Cons ci ratio: 1.767123e-01	ci left: 1.536055e-04	ci right 1.837018e-04	k: 491	n:2920000
KS ci ratio: 9.720173e-03	ci left: 5.250311e-02	ci right 5.301627e-02	k: 154057	n:2920000
ACVR1B   2920000 perm   4470 sec   (653 perm/sec)   p_kst 5.275925e-02   p_cons 1.681507e-04   p_joint 5.660959e-04

Joint ci ratio: 9.618534e-02	ci left: 5.392974e-04	ci right 5.941207e-04	k: 1659	n:2930000
Cons ci ratio: 1.763542e-01	ci left: 1.537337e-04	ci right 1.837875e-04	k: 493	n:2930000
KS ci ratio: 9.703227e-03	ci left: 5.250709e-02	ci right 5.301939e-02	k: 154595	n:2930000
ACVR1B   2930000 perm   4499 sec   (651 perm/sec)   p_kst 5.276280e-02   p_cons 1.682594e-04   p_joint 5.662116e-04

Joint ci ratio: 9.589686e-02	ci left: 5.407827e-04	ci right 5.955829e-04	k: 1669	n:2940000
Cons ci ratio: 1.758211e-01	ci left: 1.541862e-04	ci right 1.842277e-04	k: 496	n:2940000
KS ci ratio: 9.686665e-03	ci left: 5.250799e-02	ci right 5.301942e-02	k: 155124	n:2940000
ACVR1B   2940000 perm   4527 sec   (649 perm/sec)   p_kst 5.276327e-02   p_cons 1.687075e-04   p_joint 5.676871e-04

Joint ci ratio: 9.578224e-02	ci left: 5.402730e-04	ci right 5.949524e-04	k: 1673	n:2950000
Cons ci ratio: 1.754684e-01	ci left: 1.543117e-04	ci right 1.843110e-04	k: 498	n:2950000
KS ci ratio: 9.670385e-03	ci left: 5.250686e-02	ci right 5.301741e-02	k: 155647	n:2950000
ACVR1B   2950000 perm   4555 sec   (648 perm/sec)   p_kst 5.276169e-02   p_cons 1.688136e-04   p_joint 5.671186e-04

Joint ci ratio: 1.045922e-01	ci left: 4.495115e-04	ci right 4.994471e-04	k: 1403	n:2960000
Cons ci ratio: 1.754685e-01	ci left: 1.537904e-04	ci right 1.836883e-04	k: 498	n:2960000
KS ci ratio: 9.653502e-03	ci left: 5.251281e-02	ci right 5.302253e-02	k: 156191	n:2960000
ACVR1B   2960000 perm   4583 sec   (646 perm/sec)   p_kst 5.276723e-02   p_cons 1.682432e-04   p_joint 4.739865e-04

Joint ci ratio: 1.045179e-01	ci left: 4.486538e-04	ci right 4.984565e-04	k: 1405	n:2970000
Cons ci ratio: 1.754685e-01	ci left: 1.532726e-04	ci right 1.830698e-04	k: 498	n:2970000
KS ci ratio: 9.637518e-03	ci left: 5.251032e-02	ci right 5.301917e-02	k: 156710	n:2970000
ACVR1B   2970000 perm   4613 sec   (644 perm/sec)   p_kst 5.276431e-02   p_cons 1.676768e-04   p_joint 4.730640e-04

Joint ci ratio: 1.042955e-01	ci left: 4.491091e-04	ci right 4.988498e-04	k: 1411	n:2980000
Cons ci ratio: 1.747694e-01	ci left: 1.540417e-04	ci right 1.838566e-04	k: 502	n:2980000
KS ci ratio: 9.620903e-03	ci left: 5.251522e-02	ci right 5.302323e-02	k: 157251	n:2980000
ACVR1B   2980000 perm   4642 sec   (642 perm/sec)   p_kst 5.276879e-02   p_cons 1.684564e-04   p_joint 4.734899e-04

Joint ci ratio: 1.041481e-01	ci left: 4.489100e-04	ci right 4.985541e-04	k: 1415	n:2990000
Cons ci ratio: 1.745959e-01	ci left: 1.538463e-04	ci right 1.835907e-04	k: 503	n:2990000
KS ci ratio: 9.605273e-03	ci left: 5.251074e-02	ci right 5.301788e-02	k: 157764	n:2990000
ACVR1B   2990000 perm   4670 sec   (640 perm/sec)   p_kst 5.276388e-02   p_cons 1.682274e-04   p_joint 4.732441e-04

Joint ci ratio: 1.039282e-01	ci left: 4.493616e-04	ci right 4.989442e-04	k: 1421	n:3000000
Cons ci ratio: 1.742505e-01	ci left: 1.539711e-04	ci right 1.836745e-04	k: 505	n:3000000
KS ci ratio: 9.588664e-03	ci left: 5.251727e-02	ci right 5.302359e-02	k: 158310	n:3000000
ACVR1B   3000000 perm   4699 sec   (638 perm/sec)   p_kst 5.277000e-02   p_cons 1.683333e-04   p_joint 4.736667e-04

Joint ci ratio: 1.038187e-01	ci left: 4.488395e-04	ci right 4.983092e-04	k: 1424	n:3010000
Cons ci ratio: 1.735658e-01	ci left: 1.547306e-04	ci right 1.844510e-04	k: 509	n:3010000
KS ci ratio: 9.573891e-03	ci left: 5.250553e-02	ci right 5.301095e-02	k: 158801	n:3010000
ACVR1B   3010000 perm   4728 sec   (637 perm/sec)   p_kst 5.275781e-02   p_cons 1.691030e-04   p_joint 4.730897e-04

Joint ci ratio: 1.036733e-01	ci left: 4.486434e-04	ci right 4.980180e-04	k: 1428	n:3020000
Cons ci ratio: 1.735658e-01	ci left: 1.542182e-04	ci right 1.838402e-04	k: 509	n:3020000
KS ci ratio: 9.557380e-03	ci left: 5.251269e-02	ci right 5.301731e-02	k: 159349	n:3020000
ACVR1B   3020000 perm   4757 sec   (635 perm/sec)   p_kst 5.276457e-02   p_cons 1.685430e-04   p_joint 4.728477e-04

Joint ci ratio: 1.036009e-01	ci left: 4.478056e-04	ci right 4.970516e-04	k: 1430	n:3030000
Cons ci ratio: 1.732265e-01	ci left: 1.543407e-04	ci right 1.839221e-04	k: 511	n:3030000
KS ci ratio: 9.542467e-03	ci left: 5.250400e-02	ci right 5.300774e-02	k: 159849	n:3030000
ACVR1B   3030000 perm   4786 sec   (633 perm/sec)   p_kst 5.275545e-02   p_cons 1.686469e-04   p_joint 4.719472e-04

Joint ci ratio: 1.038190e-01	ci left: 4.444101e-04	ci right 4.933917e-04	k: 1424	n:3040000
Cons ci ratio: 1.730576e-01	ci left: 1.541477e-04	ci right 1.836603e-04	k: 512	n:3040000
KS ci ratio: 9.526557e-03	ci left: 5.250653e-02	ci right 5.300945e-02	k: 160383	n:3040000
ACVR1B   3040000 perm   4814 sec   (631 perm/sec)   p_kst 5.275757e-02   p_cons 1.684211e-04   p_joint 4.684211e-04

Joint ci ratio: 1.036011e-01	ci left: 4.448692e-04	ci right 4.937923e-04	k: 1430	n:3050000
Cons ci ratio: 1.730576e-01	ci left: 1.536423e-04	ci right 1.830582e-04	k: 512	n:3050000
KS ci ratio: 9.511070e-03	ci left: 5.250545e-02	ci right 5.300753e-02	k: 160906	n:3050000
ACVR1B   3050000 perm   4844 sec   (630 perm/sec)   p_kst 5.275607e-02   p_cons 1.678689e-04   p_joint 4.688525e-04

Joint ci ratio: 1.034206e-01	ci left: 4.450070e-04	ci right 4.938548e-04	k: 1435	n:3060000
Cons ci ratio: 1.727213e-01	ci left: 1.537655e-04	ci right 1.831418e-04	k: 514	n:3060000
KS ci ratio: 9.495937e-03	ci left: 5.250143e-02	ci right 5.300268e-02	k: 161420	n:3060000
ACVR1B   3060000 perm   4873 sec   (628 perm/sec)   p_kst 5.275163e-02   p_cons 1.679739e-04   p_joint 4.689542e-04

Joint ci ratio: 9.009311e-02	ci left: 5.885164e-04	ci right 6.443544e-04	k: 1891	n:3070000
Cons ci ratio: 1.722204e-01	ci left: 1.541996e-04	ci right 1.835646e-04	k: 517	n:3070000
KS ci ratio: 9.611536e-03	ci left: 5.114936e-02	ci right 5.164367e-02	k: 157786	n:3070000
ACVR1B   3070000 perm   4903 sec   (626 perm/sec)   p_kst 5.139609e-02   p_cons 1.684039e-04   p_joint 6.159609e-04

Joint ci ratio: 8.999805e-02	ci left: 5.878751e-04	ci right 6.435902e-04	k: 1895	n:3080000
Cons ci ratio: 1.715592e-01	ci left: 1.549418e-04	ci right 1.843231e-04	k: 521	n:3080000
KS ci ratio: 9.595343e-03	ci left: 5.115560e-02	ci right 5.164914e-02	k: 158318	n:3080000
ACVR1B   3080000 perm   4933 sec   (624 perm/sec)   p_kst 5.140195e-02   p_cons 1.691558e-04   p_joint 6.152597e-04

Joint ci ratio: 8.978517e-02	ci left: 5.888197e-04	ci right 6.444855e-04	k: 1904	n:3090000
Cons ci ratio: 1.712314e-01	ci left: 1.550599e-04	ci right 1.844016e-04	k: 523	n:3090000
KS ci ratio: 9.580028e-03	ci left: 5.115373e-02	ci right 5.164646e-02	k: 158825	n:3090000
ACVR1B   3090000 perm   4962 sec   (623 perm/sec)   p_kst 5.139968e-02   p_cons 1.692557e-04   p_joint 6.161812e-04

Joint ci ratio: 8.969108e-02	ci left: 5.881817e-04	ci right 6.437258e-04	k: 1908	n:3100000
Cons ci ratio: 1.709056e-01	ci left: 1.551772e-04	ci right 1.844795e-04	k: 525	n:3100000
KS ci ratio: 9.565513e-03	ci left: 5.114448e-02	ci right 5.163636e-02	k: 159309	n:3100000
ACVR1B   3100000 perm   4993 sec   (621 perm/sec)   p_kst 5.139000e-02   p_cons 1.693548e-04   p_joint 6.154839e-04

Joint ci ratio: 8.948036e-02	ci left: 5.891195e-04	ci right 6.446146e-04	k: 1917	n:3110000
Cons ci ratio: 1.704203e-01	ci left: 1.556017e-04	ci right 1.848921e-04	k: 528	n:3110000
KS ci ratio: 9.549993e-03	ci left: 5.114619e-02	ci right 5.163729e-02	k: 159827	n:3110000
ACVR1B   3110000 perm   5023 sec   (619 perm/sec)   p_kst 5.139132e-02   p_cons 1.697749e-04   p_joint 6.163987e-04

Joint ci ratio: 8.938723e-02	ci left: 5.884846e-04	ci right 6.438593e-04	k: 1921	n:3120000
Cons ci ratio: 1.704203e-01	ci left: 1.551030e-04	ci right 1.842995e-04	k: 528	n:3120000
KS ci ratio: 9.535175e-03	ci left: 5.114149e-02	ci right 5.163178e-02	k: 160325	n:3120000
ACVR1B   3120000 perm   5053 sec   (617 perm/sec)   p_kst 5.138622e-02   p_cons 1.692308e-04   p_joint 6.157051e-04

Joint ci ratio: 8.929439e-02	ci left: 5.878539e-04	ci right 6.431087e-04	k: 1925	n:3130000
Cons ci ratio: 1.700991e-01	ci left: 1.552192e-04	ci right 1.843768e-04	k: 530	n:3130000
KS ci ratio: 9.518211e-03	ci left: 5.115946e-02	ci right 5.164904e-02	k: 160894	n:3130000
ACVR1B   3130000 perm   5082 sec   (616 perm/sec)   p_kst 5.140383e-02   p_cons 1.693291e-04   p_joint 6.150160e-04

Joint ci ratio: 8.899446e-02	ci left: 5.900296e-04	ci right 6.452930e-04	k: 1938	n:3140000
Cons ci ratio: 1.697796e-01	ci left: 1.553347e-04	ci right 1.844537e-04	k: 532	n:3140000
KS ci ratio: 9.502641e-03	ci left: 5.116396e-02	ci right 5.165279e-02	k: 161421	n:3140000
ACVR1B   3140000 perm   5112 sec   (614 perm/sec)   p_kst 5.140796e-02   p_cons 1.694268e-04   p_joint 6.171975e-04

Joint ci ratio: 8.883424e-02	ci left: 5.903293e-04	ci right 6.455160e-04	k: 1945	n:3150000
Cons ci ratio: 1.693038e-01	ci left: 1.557536e-04	ci right 1.848608e-04	k: 535	n:3150000
KS ci ratio: 9.488907e-03	ci left: 5.115039e-02	ci right 5.163837e-02	k: 161891	n:3150000
ACVR1B   3150000 perm   5142 sec   (613 perm/sec)   p_kst 5.139397e-02   p_cons 1.698413e-04   p_joint 6.174603e-04

Joint ci ratio: 8.860681e-02	ci left: 5.915555e-04	ci right 6.467080e-04	k: 1955	n:3160000
Cons ci ratio: 1.688319e-01	ci left: 1.561699e-04	ci right 1.852653e-04	k: 538	n:3160000
KS ci ratio: 9.474433e-03	ci left: 5.114511e-02	ci right 5.163229e-02	k: 162387	n:3160000
ACVR1B   3160000 perm   5172 sec   (611 perm/sec)   p_kst 5.138829e-02   p_cons 1.702532e-04   p_joint 6.186709e-04

Joint ci ratio: 8.853899e-02	ci left: 5.906148e-04	ci right 6.456353e-04	k: 1958	n:3170000
Cons ci ratio: 1.686755e-01	ci left: 1.559794e-04	ci right 1.850097e-04	k: 539	n:3170000
KS ci ratio: 9.458953e-03	ci left: 5.115088e-02	ci right 5.163732e-02	k: 162918	n:3170000
ACVR1B   3170000 perm   5203 sec   (609 perm/sec)   p_kst 5.139369e-02   p_cons 1.700315e-04   p_joint 6.176656e-04

Joint ci ratio: 8.847131e-02	ci left: 5.896801e-04	ci right 6.445692e-04	k: 1961	n:3180000
Cons ci ratio: 1.686756e-01	ci left: 1.554889e-04	ci right 1.844279e-04	k: 539	n:3180000
KS ci ratio: 9.445377e-03	ci left: 5.113779e-02	ci right 5.162340e-02	k: 163389	n:3180000
ACVR1B   3180000 perm   5233 sec   (608 perm/sec)   p_kst 5.138019e-02   p_cons 1.694969e-04   p_joint 6.166667e-04

Joint ci ratio: 8.829147e-02	ci left: 5.902839e-04	ci right 6.451119e-04	k: 1969	n:3190000
Cons ci ratio: 1.683641e-01	ci left: 1.556019e-04	ci right 1.845031e-04	k: 541	n:3190000
KS ci ratio: 9.430646e-03	ci left: 5.113729e-02	ci right 5.162214e-02	k: 163900	n:3190000
ACVR1B   3190000 perm   5263 sec   (606 perm/sec)   p_kst 5.137931e-02   p_cons 1.695925e-04   p_joint 6.172414e-04

Joint ci ratio: 8.813501e-02	ci left: 5.905786e-04	ci right 6.453317e-04	k: 1976	n:3200000
Cons ci ratio: 1.680543e-01	ci left: 1.557144e-04	ci right 1.845778e-04	k: 543	n:3200000
KS ci ratio: 9.416708e-03	ci left: 5.112932e-02	ci right 5.161337e-02	k: 164387	n:3200000
ACVR1B   3200000 perm   5293 sec   (605 perm/sec)   p_kst 5.137094e-02   p_cons 1.696875e-04   p_joint 6.175000e-04

Joint ci ratio: 8.800158e-02	ci left: 5.905667e-04	ci right 6.452316e-04	k: 1982	n:3210000
Cons ci ratio: 1.679001e-01	ci left: 1.555277e-04	ci right 1.843274e-04	k: 544	n:3210000
KS ci ratio: 9.401239e-03	ci left: 5.113787e-02	ci right 5.162120e-02	k: 164927	n:3210000
ACVR1B   3210000 perm   5324 sec   (603 perm/sec)   p_kst 5.137913e-02   p_cons 1.694704e-04   p_joint 6.174455e-04

Joint ci ratio: 8.813518e-02	ci left: 5.869103e-04	ci right 6.413234e-04	k: 1976	n:3220000
Cons ci ratio: 1.679001e-01	ci left: 1.550447e-04	ci right 1.837550e-04	k: 544	n:3220000
KS ci ratio: 9.385965e-03	ci left: 5.114512e-02	ci right 5.162773e-02	k: 165463	n:3220000
ACVR1B   3220000 perm   5355 sec   (601 perm/sec)   p_kst 5.138602e-02   p_cons 1.689441e-04   p_joint 6.136646e-04

Joint ci ratio: 8.793521e-02	ci left: 5.878183e-04	ci right 6.421856e-04	k: 1985	n:3230000
Cons ci ratio: 1.677463e-01	ci left: 1.548613e-04	ci right 1.835087e-04	k: 545	n:3230000
KS ci ratio: 9.371361e-03	ci left: 5.114616e-02	ci right 5.162802e-02	k: 165979	n:3230000
ACVR1B   3230000 perm   5386 sec   (600 perm/sec)   p_kst 5.138669e-02   p_cons 1.687307e-04   p_joint 6.145511e-04

Joint ci ratio: 8.786891e-02	ci left: 5.869096e-04	ci right 6.411498e-04	k: 1988	n:3240000
Cons ci ratio: 1.677464e-01	ci left: 1.543833e-04	ci right 1.829423e-04	k: 545	n:3240000
KS ci ratio: 9.356943e-03	ci left: 5.114595e-02	ci right 5.162707e-02	k: 166491	n:3240000
ACVR1B   3240000 perm   5416 sec   (598 perm/sec)   p_kst 5.138611e-02   p_cons 1.682099e-04   p_joint 6.135802e-04

Joint ci ratio: 8.780277e-02	ci left: 5.860065e-04	ci right 6.401204e-04	k: 1991	n:3250000
Cons ci ratio: 1.672874e-01	ci left: 1.547927e-04	ci right 1.833411e-04	k: 548	n:3250000
KS ci ratio: 9.342267e-03	ci left: 5.114913e-02	ci right 5.162952e-02	k: 167014	n:3250000
ACVR1B   3250000 perm   5447 sec   (597 perm/sec)   p_kst 5.138892e-02   p_cons 1.686154e-04   p_joint 6.126154e-04

Joint ci ratio: 8.760505e-02	ci left: 5.869092e-04	ci right 6.409781e-04	k: 2000	n:3260000
Cons ci ratio: 1.668321e-01	ci left: 1.551996e-04	ci right 1.837374e-04	k: 551	n:3260000
KS ci ratio: 9.327191e-03	ci left: 5.115718e-02	ci right 5.163687e-02	k: 167553	n:3260000
ACVR1B   3260000 perm   5478 sec   (595 perm/sec)   p_kst 5.139663e-02   p_cons 1.690184e-04   p_joint 6.134969e-04

Joint ci ratio: 8.749582e-02	ci left: 5.866099e-04	ci right 6.405805e-04	k: 2005	n:3270000
Cons ci ratio: 1.663806e-01	ci left: 1.556042e-04	ci right 1.841312e-04	k: 554	n:3270000
KS ci ratio: 9.313326e-03	ci left: 5.115329e-02	ci right 5.163222e-02	k: 168053	n:3270000
ACVR1B   3270000 perm   5512 sec   (593 perm/sec)   p_kst 5.139235e-02   p_cons 1.694190e-04   p_joint 6.131498e-04

Joint ci ratio: 9.454981e-02	ci left: 4.990112e-04	ci right 5.488287e-04	k: 1717	n:3280000
Cons ci ratio: 1.660816e-01	ci left: 1.557142e-04	ci right 1.842049e-04	k: 556	n:3280000
KS ci ratio: 9.299174e-03	ci left: 5.115307e-02	ci right 5.163126e-02	k: 168565	n:3280000
ACVR1B   3280000 perm   5543 sec   (592 perm/sec)   p_kst 5.139177e-02   p_cons 1.695122e-04   p_joint 5.234756e-04

Joint ci ratio: 9.441252e-02	ci left: 4.989783e-04	ci right 5.487162e-04	k: 1722	n:3290000
Cons ci ratio: 1.657842e-01	ci left: 1.558235e-04	ci right 1.842781e-04	k: 558	n:3290000
KS ci ratio: 9.285521e-03	ci left: 5.114830e-02	ci right 5.162575e-02	k: 169062	n:3290000
ACVR1B   3290000 perm   5574 sec   (590 perm/sec)   p_kst 5.138663e-02   p_cons 1.696049e-04   p_joint 5.234043e-04

Joint ci ratio: 9.427584e-02	ci left: 4.989456e-04	ci right 5.486043e-04	k: 1727	n:3300000
Cons ci ratio: 1.656362e-01	ci left: 1.556418e-04	ci right 1.840353e-04	k: 559	n:3300000
KS ci ratio: 9.271783e-03	ci left: 5.114507e-02	ci right 5.162178e-02	k: 169564	n:3300000
ACVR1B   3300000 perm   5606 sec   (589 perm/sec)   p_kst 5.138303e-02   p_cons 1.693939e-04   p_joint 5.233333e-04

Joint ci ratio: 9.477106e-02	ci left: 4.921286e-04	ci right 5.413804e-04	k: 1709	n:3310000
Cons ci ratio: 1.654885e-01	ci left: 1.554612e-04	ci right 1.837939e-04	k: 560	n:3310000
KS ci ratio: 9.257619e-03	ci left: 5.114699e-02	ci right 5.162298e-02	k: 170083	n:3310000
ACVR1B   3310000 perm   5637 sec   (587 perm/sec)   p_kst 5.138459e-02   p_cons 1.691843e-04   p_joint 5.163142e-04

Joint ci ratio: 9.466043e-02	ci left: 4.918226e-04	ci right 5.409831e-04	k: 1713	n:3320000
Cons ci ratio: 1.653412e-01	ci left: 1.552817e-04	ci right 1.835540e-04	k: 561	n:3320000
KS ci ratio: 9.244176e-03	ci left: 5.114198e-02	ci right 5.161723e-02	k: 170579	n:3320000
ACVR1B   3320000 perm   5672 sec   (585 perm/sec)   p_kst 5.137922e-02   p_cons 1.689759e-04   p_joint 5.159639e-04

Joint ci ratio: 9.457772e-02	ci left: 4.912252e-04	ci right 5.402808e-04	k: 1716	n:3330000
Cons ci ratio: 1.651943e-01	ci left: 1.551032e-04	ci right 1.833155e-04	k: 562	n:3330000
KS ci ratio: 9.230962e-03	ci left: 5.113521e-02	ci right 5.160972e-02	k: 171069	n:3330000
ACVR1B   3330000 perm   5703 sec   (584 perm/sec)   p_kst 5.137207e-02   p_cons 1.687688e-04   p_joint 5.153153e-04

Joint ci ratio: 9.438550e-02	ci left: 4.918008e-04	ci right 5.408085e-04	k: 1723	n:3340000
Cons ci ratio: 1.649017e-01	ci left: 1.552129e-04	ci right 1.833902e-04	k: 564	n:3340000
KS ci ratio: 9.217012e-03	ci left: 5.113684e-02	ci right 5.161064e-02	k: 171587	n:3340000
ACVR1B   3340000 perm   5735 sec   (582 perm/sec)   p_kst 5.137335e-02   p_cons 1.688623e-04   p_joint 5.158683e-04

Joint ci ratio: 9.422167e-02	ci left: 4.920815e-04	ci right 5.410274e-04	k: 1729	n:3350000
Cons ci ratio: 1.646106e-01	ci left: 1.553220e-04	ci right 1.834643e-04	k: 566	n:3350000
KS ci ratio: 9.202871e-03	ci left: 5.114115e-02	ci right 5.161426e-02	k: 172114	n:3350000
ACVR1B   3350000 perm   5767 sec   (581 perm/sec)   p_kst 5.137731e-02   p_cons 1.689552e-04   p_joint 5.161194e-04

Joint ci ratio: 9.414011e-02	ci left: 4.914888e-04	ci right 5.403311e-04	k: 1732	n:3360000
Cons ci ratio: 1.640329e-01	ci left: 1.560013e-04	ci right 1.841577e-04	k: 570	n:3360000
KS ci ratio: 9.189665e-03	ci left: 5.113622e-02	ci right 5.160860e-02	k: 172610	n:3360000
ACVR1B   3360000 perm   5799 sec   (579 perm/sec)   p_kst 5.137202e-02   p_cons 1.696429e-04   p_joint 5.154762e-04

Joint ci ratio: 9.403167e-02	ci left: 4.911894e-04	ci right 5.399426e-04	k: 1736	n:3370000
Cons ci ratio: 1.637464e-01	ci left: 1.561075e-04	ci right 1.842290e-04	k: 572	n:3370000
KS ci ratio: 9.176096e-03	ci left: 5.113576e-02	ci right 5.160744e-02	k: 173121	n:3370000
ACVR1B   3370000 perm   5831 sec   (578 perm/sec)   p_kst 5.137122e-02   p_cons 1.697329e-04   p_joint 5.151335e-04

Joint ci ratio: 9.392360e-02	ci left: 4.908918e-04	ci right 5.395564e-04	k: 1740	n:3380000
Cons ci ratio: 1.636037e-01	ci left: 1.559294e-04	ci right 1.839919e-04	k: 573	n:3380000
KS ci ratio: 9.162949e-03	ci left: 5.113147e-02	ci right 5.160243e-02	k: 173619	n:3380000
ACVR1B   3380000 perm   5862 sec   (577 perm/sec)   p_kst 5.136657e-02   p_cons 1.695266e-04   p_joint 5.147929e-04

Joint ci ratio: 9.550081e-02	ci left: 4.730276e-04	ci right 5.207527e-04	k: 1683	n:3390000
Cons ci ratio: 1.633194e-01	ci left: 1.560352e-04	ci right 1.840633e-04	k: 575	n:3390000
KS ci ratio: 9.148889e-03	ci left: 5.113751e-02	ci right 5.160780e-02	k: 174152	n:3390000
ACVR1B   3390000 perm   5894 sec   (575 perm/sec)   p_kst 5.137227e-02   p_cons 1.696165e-04   p_joint 4.964602e-04

Joint ci ratio: 9.535935e-02	ci left: 4.730718e-04	ci right 5.207268e-04	k: 1688	n:3400000
Cons ci ratio: 1.630366e-01	ci left: 1.561405e-04	ci right 1.841341e-04	k: 577	n:3400000
KS ci ratio: 9.135335e-03	ci left: 5.113882e-02	ci right 5.160842e-02	k: 174669	n:3400000
ACVR1B   3400000 perm   5927 sec   (574 perm/sec)   p_kst 5.137324e-02   p_cons 1.697059e-04   p_joint 4.964706e-04

Joint ci ratio: 9.513427e-02	ci left: 4.739747e-04	ci right 5.216016e-04	k: 1696	n:3410000
Cons ci ratio: 1.627553e-01	ci left: 1.562452e-04	ci right 1.842046e-04	k: 579	n:3410000
KS ci ratio: 9.122142e-03	ci left: 5.113690e-02	ci right 5.160580e-02	k: 175175	n:3410000
ACVR1B   3410000 perm   5960 sec   (572 perm/sec)   p_kst 5.137097e-02   p_cons 1.697947e-04   p_joint 4.973607e-04

Joint ci ratio: 9.630541e-02	ci left: 4.608873e-04	ci right 5.078014e-04	k: 1655	n:3420000
Cons ci ratio: 1.621969e-01	ci left: 1.569104e-04	ci right 1.848831e-04	k: 583	n:3420000
KS ci ratio: 9.107750e-03	ci left: 5.114841e-02	ci right 5.161667e-02	k: 175727	n:3420000
ACVR1B   3420000 perm   5991 sec   (571 perm/sec)   p_kst 5.138216e-02   p_cons 1.704678e-04   p_joint 4.839181e-04

Joint ci ratio: 9.604471e-02	ci left: 4.621044e-04	ci right 5.090079e-04	k: 1664	n:3430000
Cons ci ratio: 1.616442e-01	ci left: 1.575719e-04	ci right 1.855574e-04	k: 587	n:3430000
KS ci ratio: 9.093725e-03	ci left: 5.115666e-02	ci right 5.162427e-02	k: 176268	n:3430000
ACVR1B   3430000 perm   6024 sec   (569 perm/sec)   p_kst 5.139009e-02   p_cons 1.711370e-04   p_joint 4.851312e-04

Joint ci ratio: 9.598712e-02	ci left: 4.613285e-04	ci right 5.081236e-04	k: 1666	n:3440000
Cons ci ratio: 1.615069e-01	ci left: 1.573928e-04	ci right 1.853205e-04	k: 588	n:3440000
KS ci ratio: 9.081091e-03	ci left: 5.115065e-02	ci right 5.161755e-02	k: 176760	n:3440000
ACVR1B   3440000 perm   6056 sec   (568 perm/sec)   p_kst 5.138372e-02   p_cons 1.709302e-04   p_joint 4.843023e-04

Joint ci ratio: 9.581482e-02	ci left: 4.616888e-04	ci right 5.084316e-04	k: 1672	n:3450000
Cons ci ratio: 1.610972e-01	ci left: 1.577710e-04	ci right 1.856879e-04	k: 591	n:3450000
KS ci ratio: 9.067457e-03	ci left: 5.115595e-02	ci right 5.162220e-02	k: 177291	n:3450000
ACVR1B   3450000 perm   6089 sec   (567 perm/sec)   p_kst 5.138870e-02   p_cons 1.713043e-04   p_joint 4.846377e-04

Joint ci ratio: 8.913509e-02	ci left: 5.337642e-04	ci right 5.838408e-04	k: 1932	n:3460000
Cons ci ratio: 1.608257e-01	ci left: 1.578698e-04	ci right 1.857526e-04	k: 593	n:3460000
KS ci ratio: 9.054020e-03	ci left: 5.115978e-02	ci right 5.162537e-02	k: 177817	n:3460000
ACVR1B   3460000 perm   6122 sec   (565 perm/sec)   p_kst 5.139220e-02   p_cons 1.713873e-04   p_joint 5.583815e-04

Joint ci ratio: 8.981179e-02	ci left: 5.240555e-04	ci right 5.736141e-04	k: 1903	n:3470000
Cons ci ratio: 1.606905e-01	ci left: 1.576914e-04	ci right 1.855170e-04	k: 594	n:3470000
KS ci ratio: 9.042058e-03	ci left: 5.114835e-02	ci right 5.161321e-02	k: 178290	n:3470000
ACVR1B   3470000 perm   6154 sec   (564 perm/sec)   p_kst 5.138040e-02   p_cons 1.711816e-04   p_joint 5.484150e-04

Joint ci ratio: 8.743205e-02	ci left: 5.520538e-04	ci right 6.028062e-04	k: 2008	n:3480000
Cons ci ratio: 1.402529e-01	ci left: 2.086839e-04	ci right 2.404333e-04	k: 780	n:3480000
KS ci ratio: 9.029291e-03	ci left: 5.114615e-02	ci right 5.161034e-02	k: 178795	n:3480000
ACVR1B   3480000 perm   6187 sec   (562 perm/sec)   p_kst 5.137787e-02   p_cons 2.241379e-04   p_joint 5.770115e-04

Joint ci ratio: 8.725846e-02	ci left: 5.527142e-04	ci right 6.034212e-04	k: 2016	n:3490000
Cons ci ratio: 1.398950e-01	ci left: 2.091919e-04	ci right 2.409307e-04	k: 784	n:3490000
KS ci ratio: 9.016526e-03	ci left: 5.114455e-02	ci right 5.160806e-02	k: 179302	n:3490000
ACVR1B   3490000 perm   6220 sec   (561 perm/sec)   p_kst 5.137593e-02   p_cons 2.246418e-04   p_joint 5.776504e-04

Joint ci ratio: 8.712896e-02	ci left: 5.528119e-04	ci right 6.034488e-04	k: 2022	n:3500000
Cons ci ratio: 1.398060e-01	ci left: 2.088699e-04	ci right 2.405380e-04	k: 785	n:3500000
KS ci ratio: 9.003946e-03	ci left: 5.114153e-02	ci right 5.160436e-02	k: 179804	n:3500000
ACVR1B   3500000 perm   6253 sec   (560 perm/sec)   p_kst 5.137257e-02   p_cons 2.242857e-04   p_joint 5.777143e-04

Joint ci ratio: 8.700003e-02	ci left: 5.529091e-04	ci right 6.034762e-04	k: 2028	n:3510000
Cons ci ratio: 1.397172e-01	ci left: 2.085498e-04	ci right 2.401476e-04	k: 786	n:3510000
KS ci ratio: 8.990946e-03	ci left: 5.114364e-02	ci right 5.160582e-02	k: 180324	n:3510000
ACVR1B   3510000 perm   6285 sec   (558 perm/sec)   p_kst 5.137436e-02   p_cons 2.239316e-04   p_joint 5.777778e-04

Joint ci ratio: 8.682900e-02	ci left: 5.535617e-04	ci right 6.040839e-04	k: 2036	n:3520000
Cons ci ratio: 1.395400e-01	ci left: 2.085057e-04	ci right 2.400534e-04	k: 788	n:3520000
KS ci ratio: 8.978212e-03	ci left: 5.114347e-02	ci right 5.160499e-02	k: 180836	n:3520000
ACVR1B   3520000 perm   6318 sec   (557 perm/sec)   p_kst 5.137386e-02   p_cons 2.238636e-04   p_joint 5.784091e-04

Joint ci ratio: 8.302164e-02	ci left: 6.049533e-04	ci right 6.576278e-04	k: 2227	n:3530000
Cons ci ratio: 1.391876e-01	ci left: 2.090086e-04	ci right 2.405459e-04	k: 792	n:3530000
KS ci ratio: 8.964489e-03	ci left: 5.115461e-02	ci right 5.161553e-02	k: 181388	n:3530000
ACVR1B   3530000 perm   6351 sec   (556 perm/sec)   p_kst 5.138470e-02   p_cons 2.243626e-04   p_joint 6.308782e-04

Joint ci ratio: 8.283591e-02	ci left: 6.060107e-04	ci right 6.586535e-04	k: 2237	n:3540000
Cons ci ratio: 1.389251e-01	ci left: 2.092362e-04	ci right 2.407434e-04	k: 795	n:3540000
KS ci ratio: 8.951607e-03	ci left: 5.115724e-02	ci right 5.161751e-02	k: 181910	n:3540000
ACVR1B   3540000 perm   6385 sec   (554 perm/sec)   p_kst 5.138701e-02   p_cons 2.245763e-04   p_joint 6.319209e-04

Joint ci ratio: 8.272510e-02	ci left: 6.059588e-04	ci right 6.585232e-04	k: 2243	n:3550000
Cons ci ratio: 1.388379e-01	ci left: 2.089187e-04	ci right 2.403567e-04	k: 796	n:3550000
KS ci ratio: 8.938651e-03	ci left: 5.116125e-02	ci right 5.162089e-02	k: 182437	n:3550000
ACVR1B   3550000 perm   6418 sec   (553 perm/sec)   p_kst 5.139070e-02   p_cons 2.242254e-04   p_joint 6.318310e-04

Joint ci ratio: 8.263310e-02	ci left: 6.056321e-04	ci right 6.581070e-04	k: 2248	n:3560000
Cons ci ratio: 1.388380e-01	ci left: 2.083318e-04	ci right 2.396815e-04	k: 796	n:3560000
KS ci ratio: 8.926214e-03	ci left: 5.116020e-02	ci right 5.161918e-02	k: 182946	n:3560000
ACVR1B   3560000 perm   6451 sec   (552 perm/sec)   p_kst 5.138933e-02   p_cons 2.235955e-04   p_joint 6.314607e-04

Joint ci ratio: 8.268838e-02	ci left: 6.031127e-04	ci right 6.554059e-04	k: 2245	n:3570000
Cons ci ratio: 1.386641e-01	ci left: 2.082890e-04	ci right 2.395898e-04	k: 798	n:3570000
KS ci ratio: 8.913727e-03	ci left: 5.116027e-02	ci right 5.161861e-02	k: 183459	n:3570000
ACVR1B   3570000 perm   6484 sec   (551 perm/sec)   p_kst 5.138908e-02   p_cons 2.235294e-04   p_joint 6.288515e-04

Joint ci ratio: 8.252317e-02	ci left: 6.038901e-04	ci right 6.561410e-04	k: 2254	n:3580000
Cons ci ratio: 1.384045e-01	ci left: 2.085162e-04	ci right 2.397876e-04	k: 801	n:3580000
KS ci ratio: 8.901955e-03	ci left: 5.115309e-02	ci right 5.161076e-02	k: 183946	n:3580000
ACVR1B   3580000 perm   6518 sec   (549 perm/sec)   p_kst 5.138156e-02   p_cons 2.237430e-04   p_joint 6.296089e-04

Joint ci ratio: 8.381633e-02	ci left: 5.833873e-04	ci right 6.346939e-04	k: 2185	n:3590000
Cons ci ratio: 1.383183e-01	ci left: 2.082043e-04	ci right 2.394078e-04	k: 802	n:3590000
KS ci ratio: 8.889695e-03	ci left: 5.115179e-02	ci right 5.160882e-02	k: 184454	n:3590000
ACVR1B   3590000 perm   6551 sec   (548 perm/sec)   p_kst 5.137994e-02   p_cons 2.233983e-04   p_joint 6.086351e-04

Joint ci ratio: 8.372066e-02	ci left: 5.831266e-04	ci right 6.343489e-04	k: 2190	n:3600000
Cons ci ratio: 1.381464e-01	ci left: 2.081623e-04	ci right 2.393176e-04	k: 804	n:3600000
KS ci ratio: 8.877032e-03	ci left: 5.115549e-02	ci right 5.161190e-02	k: 184980	n:3600000
ACVR1B   3600000 perm   6585 sec   (547 perm/sec)   p_kst 5.138333e-02   p_cons 2.233333e-04   p_joint 6.083333e-04

Joint ci ratio: 8.356821e-02	ci left: 5.836810e-04	ci right 6.348541e-04	k: 2198	n:3610000
Cons ci ratio: 1.379751e-01	ci left: 2.081205e-04	ci right 2.392278e-04	k: 806	n:3610000
KS ci ratio: 8.864900e-03	ci left: 5.115392e-02	ci right 5.160968e-02	k: 185487	n:3610000
ACVR1B   3610000 perm   6618 sec   (545 perm/sec)   p_kst 5.138144e-02   p_cons 2.232687e-04   p_joint 6.088643e-04

Joint ci ratio: 8.339768e-02	ci left: 5.845029e-04	ci right 6.356384e-04	k: 2207	n:3620000
Cons ci ratio: 1.375496e-01	ci left: 2.088792e-04	ci right 2.399957e-04	k: 811	n:3620000
KS ci ratio: 8.852292e-03	ci left: 5.115814e-02	ci right 5.161329e-02	k: 186015	n:3620000
ACVR1B   3620000 perm   6652 sec   (544 perm/sec)   p_kst 5.138536e-02   p_cons 2.240331e-04   p_joint 6.096685e-04

Joint ci ratio: 8.326579e-02	ci left: 5.847809e-04	ci right 6.358559e-04	k: 2214	n:3630000
Cons ci ratio: 1.375496e-01	ci left: 2.083038e-04	ci right 2.393346e-04	k: 811	n:3630000
KS ci ratio: 8.840261e-03	ci left: 5.115657e-02	ci right 5.161109e-02	k: 186522	n:3630000
ACVR1B   3630000 perm   6686 sec   (543 perm/sec)   p_kst 5.138347e-02   p_cons 2.234160e-04   p_joint 6.099174e-04

Joint ci ratio: 8.315324e-02	ci left: 5.847884e-04	ci right 6.357917e-04	k: 2220	n:3640000
Cons ci ratio: 1.369605e-01	ci left: 2.095886e-04	ci right 2.406661e-04	k: 818	n:3640000
KS ci ratio: 8.828081e-03	ci left: 5.115720e-02	ci right 5.161109e-02	k: 187037	n:3640000
ACVR1B   3640000 perm   6720 sec   (542 perm/sec)   p_kst 5.138379e-02   p_cons 2.247253e-04   p_joint 6.098901e-04

Joint ci ratio: 8.302250e-02	ci left: 5.850642e-04	ci right 6.360074e-04	k: 2227	n:3650000
Cons ci ratio: 1.365442e-01	ci left: 2.103374e-04	ci right 2.414235e-04	k: 823	n:3650000
KS ci ratio: 8.815232e-03	ci left: 5.116576e-02	ci right 5.161906e-02	k: 187581	n:3650000
ACVR1B   3650000 perm   6754 sec   (540 perm/sec)   p_kst 5.139205e-02   p_cons 2.254795e-04   p_joint 6.101370e-04

Joint ci ratio: 8.351157e-02	ci left: 5.765097e-04	ci right 6.270181e-04	k: 2201	n:3660000
Cons ci ratio: 1.363788e-01	ci left: 2.102905e-04	ci right 2.413289e-04	k: 825	n:3660000
KS ci ratio: 8.802143e-03	ci left: 5.117754e-02	ci right 5.163027e-02	k: 188137	n:3660000
ACVR1B   3660000 perm   6788 sec   (539 perm/sec)   p_kst 5.140355e-02   p_cons 2.254098e-04   p_joint 6.013661e-04

Joint ci ratio: 8.336026e-02	ci left: 5.770732e-04	ci right 6.275349e-04	k: 2209	n:3670000
Cons ci ratio: 1.362964e-01	ci left: 2.099806e-04	ci right 2.409531e-04	k: 826	n:3670000
KS ci ratio: 8.789064e-03	ci left: 5.118981e-02	ci right 5.164197e-02	k: 188695	n:3670000
ACVR1B   3670000 perm   6823 sec   (538 perm/sec)   p_kst 5.141553e-02   p_cons 2.250681e-04   p_joint 6.019074e-04

Joint ci ratio: 8.511242e-02	ci left: 5.515633e-04	ci right 6.008585e-04	k: 2119	n:3680000
Cons ci ratio: 1.362964e-01	ci left: 2.094100e-04	ci right 2.402984e-04	k: 826	n:3680000
KS ci ratio: 8.776800e-03	ci left: 5.119360e-02	ci right 5.164515e-02	k: 189222	n:3680000
ACVR1B   3680000 perm   6857 sec   (537 perm/sec)   p_kst 5.141902e-02   p_cons 2.244565e-04   p_joint 5.758152e-04

Joint ci ratio: 8.497224e-02	ci left: 5.519252e-04	ci right 6.011675e-04	k: 2126	n:3690000
Cons ci ratio: 1.362965e-01	ci left: 2.088425e-04	ci right 2.396471e-04	k: 826	n:3690000
KS ci ratio: 8.766390e-03	ci left: 5.117735e-02	ci right 5.162823e-02	k: 189675	n:3690000
ACVR1B   3690000 perm   6891 sec   (535 perm/sec)   p_kst 5.140244e-02   p_cons 2.238482e-04   p_joint 5.761518e-04

Joint ci ratio: 8.491241e-02	ci left: 5.512271e-04	ci right 6.003707e-04	k: 2129	n:3700000
Cons ci ratio: 1.361320e-01	ci left: 2.088002e-04	ci right 2.395584e-04	k: 828	n:3700000
KS ci ratio: 8.754099e-03	ci left: 5.118250e-02	ci right 5.163279e-02	k: 190207	n:3700000
ACVR1B   3700000 perm   6926 sec   (534 perm/sec)   p_kst 5.140730e-02   p_cons 2.237838e-04   p_joint 5.754054e-04

Joint ci ratio: 8.483281e-02	ci left: 5.507966e-04	ci right 5.998535e-04	k: 2133	n:3710000
Cons ci ratio: 1.361320e-01	ci left: 2.082374e-04	ci right 2.389127e-04	k: 828	n:3710000
KS ci ratio: 8.741981e-03	ci left: 5.118628e-02	ci right 5.163598e-02	k: 190734	n:3710000
ACVR1B   3710000 perm   6960 sec   (533 perm/sec)   p_kst 5.141078e-02   p_cons 2.231806e-04   p_joint 5.749326e-04

Joint ci ratio: 8.471380e-02	ci left: 5.508947e-04	ci right 5.998881e-04	k: 2139	n:3720000
Cons ci ratio: 1.358863e-01	ci left: 2.084566e-04	ci right 2.391043e-04	k: 831	n:3720000
KS ci ratio: 8.729768e-03	ci left: 5.119165e-02	ci right 5.164076e-02	k: 191267	n:3720000
ACVR1B   3720000 perm   6994 sec   (532 perm/sec)   p_kst 5.141586e-02   p_cons 2.233871e-04   p_joint 5.750000e-04

Joint ci ratio: 8.461502e-02	ci left: 5.507299e-04	ci right 5.996487e-04	k: 2144	n:3730000
Cons ci ratio: 1.354798e-01	ci left: 2.091928e-04	ci right 2.398493e-04	k: 836	n:3730000
KS ci ratio: 8.718590e-03	ci left: 5.118603e-02	ci right 5.163451e-02	k: 191759	n:3730000
ACVR1B   3730000 perm   7029 sec   (531 perm/sec)   p_kst 5.140992e-02   p_cons 2.241287e-04   p_joint 5.747989e-04

Joint ci ratio: 8.455594e-02	ci left: 5.500425e-04	ci right 5.988645e-04	k: 2147	n:3740000
Cons ci ratio: 1.353990e-01	ci left: 2.088917e-04	ci right 2.394844e-04	k: 837	n:3740000
KS ci ratio: 8.707000e-03	ci left: 5.118550e-02	ci right 5.163338e-02	k: 192270	n:3740000
ACVR1B   3740000 perm   7064 sec   (529 perm/sec)   p_kst 5.140909e-02   p_cons 2.237968e-04   p_joint 5.740642e-04

Joint ci ratio: 8.447734e-02	ci left: 5.496198e-04	ci right 5.983567e-04	k: 2151	n:3750000
Cons ci ratio: 1.350769e-01	ci left: 2.093653e-04	ci right 2.399485e-04	k: 841	n:3750000
KS ci ratio: 8.695599e-03	ci left: 5.118338e-02	ci right 5.163065e-02	k: 192775	n:3750000
ACVR1B   3750000 perm   7099 sec   (528 perm/sec)   p_kst 5.140667e-02   p_cons 2.242667e-04   p_joint 5.736000e-04

Joint ci ratio: 8.441855e-02	ci left: 5.489391e-04	ci right 5.975801e-04	k: 2154	n:3760000
Cons ci ratio: 1.348369e-01	ci left: 2.095794e-04	ci right 2.401351e-04	k: 844	n:3760000
KS ci ratio: 8.683911e-03	ci left: 5.118498e-02	ci right 5.163167e-02	k: 193294	n:3760000
ACVR1B   3760000 perm   7133 sec   (527 perm/sec)   p_kst 5.140798e-02   p_cons 2.244681e-04   p_joint 5.728723e-04

Joint ci ratio: 8.435988e-02	ci left: 5.482620e-04	ci right 5.968075e-04	k: 2157	n:3770000
Cons ci ratio: 1.347572e-01	ci left: 2.092798e-04	ci right 2.397724e-04	k: 845	n:3770000
KS ci ratio: 8.672789e-03	ci left: 5.118076e-02	ci right 5.162683e-02	k: 193791	n:3770000
ACVR1B   3770000 perm   7169 sec   (526 perm/sec)   p_kst 5.140345e-02   p_cons 2.241379e-04   p_joint 5.721485e-04

Joint ci ratio: 8.428182e-02	ci left: 5.478474e-04	ci right 5.963092e-04	k: 2161	n:3780000
Cons ci ratio: 1.346777e-01	ci left: 2.089818e-04	ci right 2.394115e-04	k: 846	n:3780000
KS ci ratio: 8.661358e-03	ci left: 5.118052e-02	ci right 5.162599e-02	k: 194303	n:3780000
ACVR1B   3780000 perm   7204 sec   (525 perm/sec)   p_kst 5.140291e-02   p_cons 2.238095e-04   p_joint 5.716931e-04

Joint ci ratio: 8.420399e-02	ci left: 5.474351e-04	ci right 5.958135e-04	k: 2165	n:3790000
Cons ci ratio: 1.345190e-01	ci left: 2.089403e-04	ci right 2.393253e-04	k: 848	n:3790000
KS ci ratio: 8.649831e-03	ci left: 5.118185e-02	ci right 5.162675e-02	k: 194821	n:3790000
ACVR1B   3790000 perm   7239 sec   (524 perm/sec)   p_kst 5.140396e-02   p_cons 2.237467e-04   p_joint 5.712401e-04

Joint ci ratio: 8.410697e-02	ci left: 5.472826e-04	ci right 5.955890e-04	k: 2170	n:3800000
Cons ci ratio: 1.343608e-01	ci left: 2.088991e-04	ci right 2.392395e-04	k: 850	n:3800000
KS ci ratio: 8.637977e-03	ci left: 5.118739e-02	ci right 5.163172e-02	k: 195355	n:3800000
ACVR1B   3800000 perm   7274 sec   (522 perm/sec)   p_kst 5.140921e-02   p_cons 2.236842e-04   p_joint 5.710526e-04

Joint ci ratio: 8.397169e-02	ci left: 5.476448e-04	ci right 5.959016e-04	k: 2177	n:3810000
Cons ci ratio: 1.342820e-01	ci left: 2.086044e-04	ci right 2.388828e-04	k: 851	n:3810000
KS ci ratio: 8.626798e-03	ci left: 5.118582e-02	ci right 5.162956e-02	k: 195862	n:3810000
ACVR1B   3810000 perm   7309 sec   (521 perm/sec)   p_kst 5.140735e-02   p_cons 2.233596e-04   p_joint 5.713911e-04

Joint ci ratio: 8.383706e-02	ci left: 5.480052e-04	ci right 5.962126e-04	k: 2184	n:3820000
Cons ci ratio: 1.342032e-01	ci left: 2.083113e-04	ci right 2.385281e-04	k: 852	n:3820000
KS ci ratio: 8.615616e-03	ci left: 5.118479e-02	ci right 5.162794e-02	k: 196371	n:3820000
ACVR1B   3820000 perm   7345 sec   (520 perm/sec)   p_kst 5.140602e-02   p_cons 2.230366e-04   p_joint 5.717277e-04

Joint ci ratio: 8.374131e-02	ci left: 5.478525e-04	ci right 5.959887e-04	k: 2189	n:3830000
Cons ci ratio: 1.341247e-01	ci left: 2.080198e-04	ci right 2.381751e-04	k: 853	n:3830000
KS ci ratio: 8.604939e-03	ci left: 5.117855e-02	ci right 5.162109e-02	k: 196860	n:3830000
ACVR1B   3830000 perm   7381 sec   (519 perm/sec)   p_kst 5.139948e-02   p_cons 2.227154e-04   p_joint 5.715405e-04

Joint ci ratio: 8.372225e-02	ci left: 5.466807e-04	ci right 5.947026e-04	k: 2190	n:3840000
Cons ci ratio: 1.340462e-01	ci left: 2.077297e-04	ci right 2.378240e-04	k: 854	n:3840000
KS ci ratio: 8.593590e-03	ci left: 5.118039e-02	ci right 5.162237e-02	k: 197380	n:3840000
ACVR1B   3840000 perm   7417 sec   (518 perm/sec)   p_kst 5.140104e-02   p_cons 2.223958e-04   p_joint 5.703125e-04

Joint ci ratio: 7.729910e-02	ci left: 6.417248e-04	ci right 6.935764e-04	k: 2569	n:3850000
Cons ci ratio: 1.338117e-01	ci left: 2.079433e-04	ci right 2.380116e-04	k: 857	n:3850000
KS ci ratio: 8.582582e-03	ci left: 5.117886e-02	ci right 5.162025e-02	k: 197887	n:3850000
ACVR1B   3850000 perm   7453 sec   (517 perm/sec)   p_kst 5.139922e-02   p_cons 2.225974e-04   p_joint 6.672727e-04

Joint ci ratio: 7.725406e-02	ci left: 6.408245e-04	ci right 6.925718e-04	k: 2572	n:3860000
Cons ci ratio: 1.336560e-01	ci left: 2.079054e-04	ci right 2.379305e-04	k: 859	n:3860000
KS ci ratio: 8.571526e-03	ci left: 5.117837e-02	ci right 5.161919e-02	k: 198398	n:3860000
ACVR1B   3860000 perm   7490 sec   (515 perm/sec)   p_kst 5.139845e-02   p_cons 2.225389e-04   p_joint 6.663212e-04

Joint ci ratio: 7.711928e-02	ci left: 6.414493e-04	ci right 6.931527e-04	k: 2581	n:3870000
Cons ci ratio: 1.335008e-01	ci left: 2.078677e-04	ci right 2.378497e-04	k: 861	n:3870000
KS ci ratio: 8.559990e-03	ci left: 5.118382e-02	ci right 5.162409e-02	k: 198932	n:3870000
ACVR1B   3870000 perm   7526 sec   (514 perm/sec)   p_kst 5.140362e-02   p_cons 2.224806e-04   p_joint 6.669251e-04

Joint ci ratio: 7.698520e-02	ci left: 6.420710e-04	ci right 6.937305e-04	k: 2590	n:3880000
Cons ci ratio: 1.333462e-01	ci left: 2.078302e-04	ci right 2.377694e-04	k: 863	n:3880000
KS ci ratio: 8.550083e-03	ci left: 5.117123e-02	ci right 5.161088e-02	k: 199396	n:3880000
ACVR1B   3880000 perm   7562 sec   (513 perm/sec)   p_kst 5.139072e-02   p_cons 2.224227e-04   p_joint 6.675258e-04

Joint ci ratio: 7.888158e-02	ci left: 6.094166e-04	ci right 6.597121e-04	k: 2467	n:3890000
Cons ci ratio: 1.331153e-01	ci left: 2.080414e-04	ci right 2.379550e-04	k: 866	n:3890000
KS ci ratio: 8.539489e-03	ci left: 5.116692e-02	ci right 5.160598e-02	k: 199892	n:3890000
ACVR1B   3890000 perm   7598 sec   (512 perm/sec)   p_kst 5.138612e-02   p_cons 2.226221e-04   p_joint 6.341902e-04

Joint ci ratio: 7.875403e-02	ci left: 6.098648e-04	ci right 6.601122e-04	k: 2475	n:3900000
Cons ci ratio: 1.328856e-01	ci left: 2.082516e-04	ci right 2.381397e-04	k: 869	n:3900000
KS ci ratio: 8.529137e-03	ci left: 5.116033e-02	ci right 5.159880e-02	k: 200379	n:3900000
ACVR1B   3900000 perm   7634 sec   (511 perm/sec)   p_kst 5.137923e-02   p_cons 2.228205e-04   p_joint 6.346154e-04

Joint ci ratio: 7.870640e-02	ci left: 6.090572e-04	ci right 6.592063e-04	k: 2478	n:3910000
Cons ci ratio: 1.326571e-01	ci left: 2.084608e-04	ci right 2.383234e-04	k: 872	n:3910000
KS ci ratio: 8.518822e-03	ci left: 5.115377e-02	ci right 5.159165e-02	k: 200866	n:3910000
ACVR1B   3910000 perm   7671 sec   (510 perm/sec)   p_kst 5.137238e-02   p_cons 2.230179e-04   p_joint 6.337596e-04

Joint ci ratio: 7.859550e-02	ci left: 6.092541e-04	ci right 6.593455e-04	k: 2485	n:3920000
Cons ci ratio: 1.323542e-01	ci left: 2.089156e-04	ci right 2.387696e-04	k: 876	n:3920000
KS ci ratio: 8.508433e-03	ci left: 5.114852e-02	ci right 5.158582e-02	k: 201358	n:3920000
ACVR1B   3920000 perm   7708 sec   (509 perm/sec)   p_kst 5.136684e-02   p_cons 2.234694e-04   p_joint 6.339286e-04

Joint ci ratio: 7.856395e-02	ci left: 6.082027e-04	ci right 6.581867e-04	k: 2487	n:3930000
Cons ci ratio: 1.322788e-01	ci left: 2.086300e-04	ci right 2.384249e-04	k: 877	n:3930000
KS ci ratio: 8.497172e-03	ci left: 5.115371e-02	ci right 5.159047e-02	k: 201891	n:3930000
ACVR1B   3930000 perm   7746 sec   (507 perm/sec)   p_kst 5.137176e-02   p_cons 2.231552e-04   p_joint 6.328244e-04

Joint ci ratio: 7.846939e-02	ci left: 6.081520e-04	ci right 6.580689e-04	k: 2493	n:3940000
Cons ci ratio: 1.321284e-01	ci left: 2.085913e-04	ci right 2.383442e-04	k: 879	n:3940000
KS ci ratio: 8.485647e-03	ci left: 5.116241e-02	ci right 5.159865e-02	k: 202438	n:3940000
ACVR1B   3940000 perm   7783 sec   (506 perm/sec)   p_kst 5.138020e-02   p_cons 2.230964e-04   p_joint 6.327411e-04

Joint ci ratio: 7.837518e-02	ci left: 6.081016e-04	ci right 6.579516e-04	k: 2499	n:3950000
Cons ci ratio: 1.319785e-01	ci left: 2.085529e-04	ci right 2.382638e-04	k: 881	n:3950000
KS ci ratio: 8.475621e-03	ci left: 5.115440e-02	ci right 5.159006e-02	k: 202919	n:3950000
ACVR1B   3950000 perm   7820 sec   (505 perm/sec)   p_kst 5.137190e-02   p_cons 2.230380e-04   p_joint 6.326582e-04

Joint ci ratio: 7.831257e-02	ci left: 6.075563e-04	ci right 6.573200e-04	k: 2503	n:3960000
Cons ci ratio: 1.318291e-01	ci left: 2.085146e-04	ci right 2.381838e-04	k: 883	n:3960000
KS ci ratio: 8.464797e-03	ci left: 5.115601e-02	ci right 5.159112e-02	k: 203438	n:3960000
ACVR1B   3960000 perm   7860 sec   (504 perm/sec)   p_kst 5.137323e-02   p_cons 2.229798e-04   p_joint 6.320707e-04

Joint ci ratio: 7.853262e-02	ci left: 6.025685e-04	ci right 6.520688e-04	k: 2489	n:3970000
Cons ci ratio: 1.316803e-01	ci left: 2.084765e-04	ci right 2.381043e-04	k: 885	n:3970000
KS ci ratio: 8.454014e-03	ci left: 5.115760e-02	ci right 5.159217e-02	k: 203957	n:3970000
ACVR1B   3970000 perm   7897 sec   (503 perm/sec)   p_kst 5.137456e-02   p_cons 2.229219e-04   p_joint 6.269521e-04

Joint ci ratio: 7.240465e-02	ci left: 7.092793e-04	ci right 7.628082e-04	k: 2928	n:3980000
Cons ci ratio: 1.315319e-01	ci left: 2.084387e-04	ci right 2.380251e-04	k: 887	n:3980000
KS ci ratio: 8.443186e-03	ci left: 5.116020e-02	ci right 5.159423e-02	k: 204480	n:3980000
ACVR1B   3980000 perm   7935 sec   (502 perm/sec)   p_kst 5.137688e-02   p_cons 2.228643e-04   p_joint 7.356784e-04

Joint ci ratio: 7.231829e-02	ci left: 7.092243e-04	ci right 7.626825e-04	k: 2935	n:3990000
Cons ci ratio: 1.314579e-01	ci left: 2.081587e-04	ci right 2.376874e-04	k: 888	n:3990000
KS ci ratio: 8.432659e-03	ci left: 5.115978e-02	ci right 5.159326e-02	k: 204991	n:3990000
ACVR1B   3990000 perm   7972 sec   (500 perm/sec)   p_kst 5.137619e-02   p_cons 2.225564e-04   p_joint 7.355890e-04

Joint ci ratio: 7.219542e-02	ci left: 7.099061e-04	ci right 7.633209e-04	k: 2945	n:4000000
Cons ci ratio: 1.314580e-01	ci left: 2.076383e-04	ci right 2.370932e-04	k: 888	n:4000000
KS ci ratio: 8.422020e-03	ci left: 5.116110e-02	ci right 5.159405e-02	k: 205509	n:4000000
ACVR1B   4000000 perm   8010 sec   (499 perm/sec)   p_kst 5.137725e-02   p_cons 2.220000e-04   p_joint 7.362500e-04

Joint ci ratio: 7.240485e-02	ci left: 7.039729e-04	ci right 7.571014e-04	k: 2928	n:4010000
Cons ci ratio: 1.314580e-01	ci left: 2.071205e-04	ci right 2.365019e-04	k: 888	n:4010000
KS ci ratio: 8.411894e-03	ci left: 5.115695e-02	ci right 5.158933e-02	k: 206005	n:4010000
ACVR1B   4010000 perm   8048 sec   (498 perm/sec)   p_kst 5.137282e-02   p_cons 2.214464e-04   p_joint 7.301746e-04

Joint ci ratio: 7.231849e-02	ci left: 7.039315e-04	ci right 7.569909e-04	k: 2935	n:4020000
Cons ci ratio: 1.313841e-01	ci left: 2.068458e-04	ci right 2.361705e-04	k: 889	n:4020000
KS ci ratio: 8.401420e-03	ci left: 5.115729e-02	ci right 5.158913e-02	k: 206519	n:4020000
ACVR1B   4020000 perm   8087 sec   (497 perm/sec)   p_kst 5.137289e-02   p_cons 2.211443e-04   p_joint 7.300995e-04

Joint ci ratio: 7.238026e-02	ci left: 7.009665e-04	ci right 7.538494e-04	k: 2930	n:4030000
Cons ci ratio: 1.312368e-01	ci left: 2.068125e-04	ci right 2.360971e-04	k: 891	n:4030000
KS ci ratio: 8.390984e-03	ci left: 5.115762e-02	ci right 5.158893e-02	k: 207033	n:4030000
ACVR1B   4030000 perm   8125 sec   (496 perm/sec)   p_kst 5.137295e-02   p_cons 2.210918e-04   p_joint 7.270471e-04

Joint ci ratio: 7.236797e-02	ci left: 6.994745e-04	ci right 7.522355e-04	k: 2931	n:4040000
Cons ci ratio: 1.310899e-01	ci left: 2.067794e-04	ci right 2.360240e-04	k: 893	n:4040000
KS ci ratio: 8.380714e-03	ci left: 5.115647e-02	ci right 5.158724e-02	k: 207541	n:4040000
ACVR1B   4040000 perm   8163 sec   (495 perm/sec)   p_kst 5.137153e-02   p_cons 2.210396e-04   p_joint 7.254950e-04

Joint ci ratio: 7.228174e-02	ci left: 6.994445e-04	ci right 7.521378e-04	k: 2938	n:4050000
Cons ci ratio: 1.310899e-01	ci left: 2.062689e-04	ci right 2.354412e-04	k: 893	n:4050000
KS ci ratio: 8.370313e-03	ci left: 5.115730e-02	ci right 5.158754e-02	k: 208057	n:4050000
ACVR1B   4050000 perm   8200 sec   (494 perm/sec)   p_kst 5.137210e-02   p_cons 2.204938e-04   p_joint 7.254321e-04

Joint ci ratio: 7.215906e-02	ci left: 7.001403e-04	ci right 7.527927e-04	k: 2948	n:4060000
Cons ci ratio: 1.308705e-01	ci left: 2.064755e-04	ci right 2.356244e-04	k: 896	n:4060000
KS ci ratio: 8.360056e-03	ci left: 5.115689e-02	ci right 5.158660e-02	k: 208568	n:4060000
ACVR1B   4060000 perm   8239 sec   (493 perm/sec)   p_kst 5.137143e-02   p_cons 2.206897e-04   p_joint 7.261084e-04

Joint ci ratio: 7.208577e-02	ci left: 6.998677e-04	ci right 7.524439e-04	k: 2954	n:4070000
Cons ci ratio: 1.307249e-01	ci left: 2.064435e-04	ci right 2.355529e-04	k: 898	n:4070000
KS ci ratio: 8.349942e-03	ci left: 5.115527e-02	ci right 5.158444e-02	k: 209074	n:4070000
ACVR1B   4070000 perm   8277 sec   (492 perm/sec)   p_kst 5.136953e-02   p_cons 2.206388e-04   p_joint 7.257985e-04

Joint ci ratio: 7.198839e-02	ci left: 7.000778e-04	ci right 7.525958e-04	k: 2962	n:4080000
Cons ci ratio: 1.305797e-01	ci left: 2.064117e-04	ci right 2.354818e-04	k: 900	n:4080000
KS ci ratio: 8.339738e-03	ci left: 5.115511e-02	ci right 5.158376e-02	k: 209586	n:4080000
ACVR1B   4080000 perm   8315 sec   (491 perm/sec)   p_kst 5.136912e-02   p_cons 2.205882e-04   p_joint 7.259804e-04

Joint ci ratio: 7.189139e-02	ci left: 7.002869e-04	ci right 7.527468e-04	k: 2970	n:4090000
Cons ci ratio: 1.303628e-01	ci left: 2.066166e-04	ci right 2.356635e-04	k: 903	n:4090000
KS ci ratio: 8.329405e-03	ci left: 5.115692e-02	ci right 5.158504e-02	k: 210106	n:4090000
ACVR1B   4090000 perm   8353 sec   (490 perm/sec)   p_kst 5.137066e-02   p_cons 2.207824e-04   p_joint 7.261614e-04

Joint ci ratio: 7.181892e-02	ci left: 7.000160e-04	ci right 7.524006e-04	k: 2976	n:4100000
Cons ci ratio: 1.300038e-01	ci left: 2.072924e-04	ci right 2.363479e-04	k: 908	n:4100000
KS ci ratio: 8.319110e-03	ci left: 5.115871e-02	ci right 5.158632e-02	k: 210626	n:4100000
ACVR1B   4100000 perm   8391 sec   (489 perm/sec)   p_kst 5.137220e-02   p_cons 2.214634e-04   p_joint 7.258537e-04

Joint ci ratio: 7.168657e-02	ci left: 7.009412e-04	ci right 7.532943e-04	k: 2987	n:4110000
Cons ci ratio: 1.297898e-01	ci left: 2.074943e-04	ci right 2.365265e-04	k: 911	n:4110000
KS ci ratio: 8.308231e-03	ci left: 5.116778e-02	ci right 5.159490e-02	k: 211176	n:4110000
ACVR1B   4110000 perm   8429 sec   (488 perm/sec)   p_kst 5.138102e-02   p_cons 2.216545e-04   p_joint 7.267640e-04

Joint ci ratio: 7.160275e-02	ci left: 7.009085e-04	ci right 7.531954e-04	k: 2994	n:4120000
Cons ci ratio: 1.296477e-01	ci left: 2.074604e-04	ci right 2.364536e-04	k: 913	n:4120000
KS ci ratio: 8.297394e-03	ci left: 5.117680e-02	ci right 5.160344e-02	k: 211726	n:4120000
ACVR1B   4120000 perm   8467 sec   (487 perm/sec)   p_kst 5.138981e-02   p_cons 2.216019e-04   p_joint 7.266990e-04

Joint ci ratio: 7.151922e-02	ci left: 7.008760e-04	ci right 7.530969e-04	k: 3001	n:4130000
Cons ci ratio: 1.296477e-01	ci left: 2.069580e-04	ci right 2.358810e-04	k: 913	n:4130000
KS ci ratio: 8.286991e-03	ci left: 5.118119e-02	ci right 5.160733e-02	k: 212257	n:4130000
ACVR1B   4130000 perm   8506 sec   (486 perm/sec)   p_kst 5.139395e-02   p_cons 2.210654e-04   p_joint 7.266344e-04

Joint ci ratio: 7.144787e-02	ci left: 7.006064e-04	ci right 7.527530e-04	k: 3007	n:4140000
Cons ci ratio: 1.296477e-01	ci left: 2.064581e-04	ci right 2.353113e-04	k: 913	n:4140000
KS ci ratio: 8.277017e-03	ci left: 5.118098e-02	ci right 5.160660e-02	k: 212769	n:4140000
ACVR1B   4140000 perm   8545 sec   (485 perm/sec)   p_kst 5.139348e-02   p_cons 2.205314e-04   p_joint 7.263285e-04

Joint ci ratio: 7.136488e-02	ci left: 7.005748e-04	ci right 7.526560e-04	k: 3014	n:4150000
Cons ci ratio: 1.295061e-01	ci left: 2.064269e-04	ci right 2.352418e-04	k: 915	n:4150000
KS ci ratio: 8.266873e-03	ci left: 5.118318e-02	ci right 5.160829e-02	k: 213291	n:4150000
ACVR1B   4150000 perm   8584 sec   (483 perm/sec)   p_kst 5.139542e-02   p_cons 2.204819e-04   p_joint 7.262651e-04

Joint ci ratio: 7.132944e-02	ci left: 6.995990e-04	ci right 7.515808e-04	k: 3017	n:4160000
Cons ci ratio: 1.293650e-01	ci left: 2.063959e-04	ci right 2.351726e-04	k: 917	n:4160000
KS ci ratio: 8.257175e-03	ci left: 5.118056e-02	ci right 5.160516e-02	k: 213793	n:4160000
ACVR1B   4160000 perm   8623 sec   (482 perm/sec)   p_kst 5.139255e-02   p_cons 2.204327e-04   p_joint 7.252404e-04

Joint ci ratio: 7.333887e-02	ci left: 6.595389e-04	ci right 7.099835e-04	k: 2854	n:4170000
Cons ci ratio: 1.292243e-01	ci left: 2.063651e-04	ci right 2.351038e-04	k: 919	n:4170000
KS ci ratio: 8.248200e-03	ci left: 5.116983e-02	ci right 5.159387e-02	k: 214261	n:4170000
ACVR1B   4170000 perm   8662 sec   (481 perm/sec)   p_kst 5.138153e-02   p_cons 2.203837e-04   p_joint 6.844125e-04

Joint ci ratio: 6.608134e-02	ci left: 8.133482e-04	ci right 8.691652e-04	k: 3515	n:4180000
Cons ci ratio: 1.288745e-01	ci left: 2.070289e-04	ci right 2.357761e-04	k: 924	n:4180000
KS ci ratio: 8.238688e-03	ci left: 5.116583e-02	ci right 5.158934e-02	k: 214757	n:4180000
ACVR1B   4180000 perm   8701 sec   (480 perm/sec)   p_kst 5.137727e-02   p_cons 2.210526e-04   p_joint 8.409091e-04

Joint ci ratio: 6.919429e-02	ci left: 7.389056e-04	ci right 7.920985e-04	k: 3206	n:4190000
Cons ci ratio: 1.288049e-01	ci left: 2.067658e-04	ci right 2.354598e-04	k: 925	n:4190000
KS ci ratio: 8.229350e-03	ci left: 5.116018e-02	ci right 5.158316e-02	k: 215246	n:4190000
ACVR1B   4190000 perm   8741 sec   (479 perm/sec)   p_kst 5.137136e-02   p_cons 2.207637e-04   p_joint 7.651551e-04

Joint ci ratio: 6.911890e-02	ci left: 7.387841e-04	ci right 7.919081e-04	k: 3213	n:4200000
Cons ci ratio: 1.285968e-01	ci left: 2.069648e-04	ci right 2.356364e-04	k: 928	n:4200000
KS ci ratio: 8.220023e-03	ci left: 5.115479e-02	ci right 5.157725e-02	k: 215736	n:4200000
ACVR1B   4200000 perm   8781 sec   (478 perm/sec)   p_kst 5.136571e-02   p_cons 2.209524e-04   p_joint 7.650000e-04

Joint ci ratio: 6.915127e-02	ci left: 7.363290e-04	ci right 7.893022e-04	k: 3210	n:4210000
Cons ci ratio: 1.283896e-01	ci left: 2.071629e-04	ci right 2.358122e-04	k: 931	n:4210000
KS ci ratio: 8.209688e-03	ci left: 5.116176e-02	ci right 5.158375e-02	k: 216278	n:4210000
ACVR1B   4210000 perm   8820 sec   (477 perm/sec)   p_kst 5.137245e-02   p_cons 2.211401e-04   p_joint 7.624703e-04

Joint ci ratio: 6.904383e-02	ci left: 7.369128e-04	ci right 7.898424e-04	k: 3220	n:4220000
Cons ci ratio: 1.281150e-01	ci left: 2.075894e-04	ci right 2.362316e-04	k: 935	n:4220000
KS ci ratio: 8.199990e-03	ci left: 5.116161e-02	ci right 5.158309e-02	k: 216790	n:4220000
ACVR1B   4220000 perm   8863 sec   (476 perm/sec)   p_kst 5.137204e-02   p_cons 2.215640e-04   p_joint 7.630332e-04

Joint ci ratio: 6.893688e-02	ci left: 7.374940e-04	ci right 7.903800e-04	k: 3230	n:4230000
Cons ci ratio: 1.279783e-01	ci left: 2.075563e-04	ci right 2.361611e-04	k: 937	n:4230000
KS ci ratio: 8.190822e-03	ci left: 5.115555e-02	ci right 5.157651e-02	k: 217277	n:4230000
ACVR1B   4230000 perm   8903 sec   (475 perm/sec)   p_kst 5.136572e-02   p_cons 2.215130e-04   p_joint 7.635934e-04

Joint ci ratio: 6.885169e-02	ci left: 7.376089e-04	ci right 7.904352e-04	k: 3238	n:4240000
Cons ci ratio: 1.279102e-01	ci left: 2.072951e-04	ci right 2.358475e-04	k: 938	n:4240000
KS ci ratio: 8.181032e-03	ci left: 5.115729e-02	ci right 5.157776e-02	k: 217797	n:4240000
ACVR1B   4240000 perm   8943 sec   (474 perm/sec)   p_kst 5.136722e-02   p_cons 2.212264e-04   p_joint 7.636792e-04

Joint ci ratio: 6.880924e-02	ci left: 7.367984e-04	ci right 7.895327e-04	k: 3242	n:4250000
Cons ci ratio: 1.279102e-01	ci left: 2.068074e-04	ci right 2.352926e-04	k: 938	n:4250000
KS ci ratio: 8.171829e-03	ci left: 5.115245e-02	ci right 5.157240e-02	k: 218289	n:4250000
ACVR1B   4250000 perm   8984 sec   (473 perm/sec)   p_kst 5.136212e-02   p_cons 2.207059e-04   p_joint 7.628235e-04

Joint ci ratio: 6.871395e-02	ci left: 7.371451e-04	ci right 7.898283e-04	k: 3251	n:4260000
Cons ci ratio: 1.277064e-01	ci left: 2.070036e-04	ci right 2.354670e-04	k: 941	n:4260000
KS ci ratio: 8.162559e-03	ci left: 5.114880e-02	ci right 5.156824e-02	k: 218786	n:4260000
ACVR1B   4260000 perm   9026 sec   (472 perm/sec)   p_kst 5.135822e-02   p_cons 2.208920e-04   p_joint 7.631455e-04

Joint ci ratio: 6.860853e-02	ci left: 7.377205e-04	ci right 7.903607e-04	k: 3261	n:4270000
Cons ci ratio: 1.273015e-01	ci left: 2.078792e-04	ci right 2.363655e-04	k: 947	n:4270000
KS ci ratio: 8.152987e-03	ci left: 5.114914e-02	ci right 5.156809e-02	k: 219300	n:4270000
ACVR1B   4270000 perm   9066 sec   (471 perm/sec)   p_kst 5.135831e-02   p_cons 2.217799e-04   p_joint 7.637002e-04

Joint ci ratio: 6.851406e-02	ci left: 7.380636e-04	ci right 7.906529e-04	k: 3270	n:4280000
Cons ci ratio: 1.272345e-01	ci left: 2.076197e-04	ci right 2.360543e-04	k: 948	n:4280000
KS ci ratio: 8.143527e-03	ci left: 5.114855e-02	ci right 5.156701e-02	k: 219810	n:4280000
ACVR1B   4280000 perm   9107 sec   (470 perm/sec)   p_kst 5.135748e-02   p_cons 2.214953e-04   p_joint 7.640187e-04

Joint ci ratio: 6.841999e-02	ci left: 7.384052e-04	ci right 7.909437e-04	k: 3279	n:4290000
Cons ci ratio: 1.271006e-01	ci left: 2.075871e-04	ci right 2.359851e-04	k: 950	n:4290000
KS ci ratio: 8.134528e-03	ci left: 5.114284e-02	ci right 5.156079e-02	k: 220298	n:4290000
ACVR1B   4290000 perm   9150 sec   (469 perm/sec)   p_kst 5.135152e-02   p_cons 2.214452e-04   p_joint 7.643357e-04

Joint ci ratio: 6.860871e-02	ci left: 7.325736e-04	ci right 7.848467e-04	k: 3261	n:4300000
Cons ci ratio: 1.269672e-01	ci left: 2.075547e-04	ci right 2.359162e-04	k: 952	n:4300000
KS ci ratio: 8.125229e-03	ci left: 5.114111e-02	ci right 5.155856e-02	k: 220803	n:4300000
ACVR1B   4300000 perm   9190 sec   (468 perm/sec)   p_kst 5.134953e-02   p_cons 2.213953e-04   p_joint 7.583721e-04

Joint ci ratio: 6.861930e-02	ci left: 7.306458e-04	ci right 7.827897e-04	k: 3260	n:4310000
Cons ci ratio: 1.267015e-01	ci left: 2.079717e-04	ci right 2.363263e-04	k: 956	n:4310000
KS ci ratio: 8.116406e-03	ci left: 5.113406e-02	ci right 5.155100e-02	k: 221285	n:4310000
ACVR1B   4310000 perm   9231 sec   (467 perm/sec)   p_kst 5.134223e-02   p_cons 2.218097e-04   p_joint 7.563805e-04

Joint ci ratio: 6.848288e-02	ci left: 7.319122e-04	ci right 7.840385e-04	k: 3273	n:4320000
Cons ci ratio: 1.267016e-01	ci left: 2.074903e-04	ci right 2.357793e-04	k: 956	n:4320000
KS ci ratio: 8.107208e-03	ci left: 5.113189e-02	ci right 5.154834e-02	k: 221788	n:4320000
ACVR1B   4320000 perm   9273 sec   (466 perm/sec)   p_kst 5.133981e-02   p_cons 2.212963e-04   p_joint 7.576389e-04

Joint ci ratio: 6.843067e-02	ci left: 7.313568e-04	ci right 7.834023e-04	k: 3278	n:4330000
Cons ci ratio: 1.265694e-01	ci left: 2.074584e-04	ci right 2.357113e-04	k: 958	n:4330000
KS ci ratio: 8.098021e-03	ci left: 5.112997e-02	ci right 5.154592e-02	k: 222292	n:4330000
ACVR1B   4330000 perm   9313 sec   (465 perm/sec)   p_kst 5.133764e-02   p_cons 2.212471e-04   p_joint 7.570439e-04

Joint ci ratio: 6.837858e-02	ci left: 7.308040e-04	ci right 7.827690e-04	k: 3283	n:4340000
Cons ci ratio: 1.265034e-01	ci left: 2.072035e-04	ci right 2.354059e-04	k: 959	n:4340000
KS ci ratio: 8.088426e-03	ci left: 5.113334e-02	ci right 5.154883e-02	k: 222819	n:4340000
ACVR1B   4340000 perm   9353 sec   (464 perm/sec)   p_kst 5.134078e-02   p_cons 2.209677e-04   p_joint 7.564516e-04

Joint ci ratio: 6.830582e-02	ci left: 7.307057e-04	ci right 7.826062e-04	k: 3290	n:4350000
Cons ci ratio: 1.265035e-01	ci left: 2.067271e-04	ci right 2.348647e-04	k: 959	n:4350000
KS ci ratio: 8.079150e-03	ci left: 5.113325e-02	ci right 5.154826e-02	k: 223331	n:4350000
ACVR1B   4350000 perm   9394 sec   (463 perm/sec)   p_kst 5.134046e-02   p_cons 2.204598e-04   p_joint 7.563218e-04

Joint ci ratio: 6.930354e-02	ci left: 7.078408e-04	ci right 7.588811e-04	k: 3196	n:4360000
Cons ci ratio: 1.264377e-01	ci left: 2.064751e-04	ci right 2.345626e-04	k: 960	n:4360000
KS ci ratio: 8.069470e-03	ci left: 5.113843e-02	ci right 5.155299e-02	k: 223866	n:4360000
ACVR1B   4360000 perm   9437 sec   (462 perm/sec)   p_kst 5.134541e-02   p_cons 2.201835e-04   p_joint 7.330275e-04

Joint ci ratio: 6.926025e-02	ci left: 7.071205e-04	ci right 7.580757e-04	k: 3200	n:4370000
Cons ci ratio: 1.264377e-01	ci left: 2.060026e-04	ci right 2.340259e-04	k: 960	n:4370000
KS ci ratio: 8.060032e-03	ci left: 5.114108e-02	ci right 5.155517e-02	k: 224390	n:4370000
ACVR1B   4370000 perm   9479 sec   (461 perm/sec)   p_kst 5.134783e-02   p_cons 2.196796e-04   p_joint 7.322654e-04

Joint ci ratio: 6.916308e-02	ci left: 7.075253e-04	ci right 7.584353e-04	k: 3209	n:4380000
Cons ci ratio: 1.263720e-01	ci left: 2.057534e-04	ci right 2.337271e-04	k: 961	n:4380000
KS ci ratio: 8.051099e-03	ci left: 5.113802e-02	ci right 5.155162e-02	k: 224889	n:4380000
ACVR1B   4380000 perm   9520 sec   (460 perm/sec)   p_kst 5.134452e-02   p_cons 2.194064e-04   p_joint 7.326484e-04

Joint ci ratio: 6.909854e-02	ci left: 7.072567e-04	ci right 7.580980e-04	k: 3215	n:4390000
Cons ci ratio: 1.263720e-01	ci left: 2.052847e-04	ci right 2.331947e-04	k: 961	n:4390000
KS ci ratio: 8.041481e-03	ci left: 5.114361e-02	ci right 5.155676e-02	k: 225426	n:4390000
ACVR1B   4390000 perm   9561 sec   (459 perm/sec)   p_kst 5.134989e-02   p_cons 2.189066e-04   p_joint 7.323462e-04

Joint ci ratio: 6.902346e-02	ci left: 7.072127e-04	ci right 7.579935e-04	k: 3222	n:4400000
Cons ci ratio: 1.263720e-01	ci left: 2.048181e-04	ci right 2.326647e-04	k: 961	n:4400000
KS ci ratio: 8.032572e-03	ci left: 5.114101e-02	ci right 5.155368e-02	k: 225927	n:4400000
ACVR1B   4400000 perm   9602 sec   (458 perm/sec)   p_kst 5.134705e-02   p_cons 2.184091e-04   p_joint 7.322727e-04

Joint ci ratio: 6.890595e-02	ci left: 7.080604e-04	ci right 7.588120e-04	k: 3233	n:4410000
Cons ci ratio: 1.263064e-01	ci left: 2.045733e-04	ci right 2.323710e-04	k: 962	n:4410000
KS ci ratio: 8.023730e-03	ci left: 5.113796e-02	ci right 5.155015e-02	k: 226426	n:4410000
ACVR1B   4410000 perm   9644 sec   (457 perm/sec)   p_kst 5.134376e-02   p_cons 2.181406e-04   p_joint 7.331066e-04

Joint ci ratio: 6.969770e-02	ci left: 6.902286e-04	ci right 7.402935e-04	k: 3160	n:4420000
Cons ci ratio: 1.261755e-01	ci left: 2.045486e-04	ci right 2.323121e-04	k: 964	n:4420000
KS ci ratio: 8.014694e-03	ci left: 5.113765e-02	ci right 5.154937e-02	k: 226937	n:4420000
ACVR1B   4420000 perm   9686 sec   (456 perm/sec)   p_kst 5.134321e-02   p_cons 2.180995e-04   p_joint 7.149321e-04

Joint ci ratio: 6.966468e-02	ci left: 6.893359e-04	ci right 7.393114e-04	k: 3163	n:4430000
Cons ci ratio: 1.261102e-01	ci left: 2.043055e-04	ci right 2.320205e-04	k: 965	n:4430000
KS ci ratio: 8.005780e-03	ci left: 5.113620e-02	ci right 5.154745e-02	k: 227443	n:4430000
ACVR1B   4430000 perm   9728 sec   (455 perm/sec)   p_kst 5.134153e-02   p_cons 2.178330e-04   p_joint 7.139955e-04

Joint ci ratio: 6.956579e-02	ci left: 6.897751e-04	ci right 7.397086e-04	k: 3172	n:4440000
Cons ci ratio: 1.259798e-01	ci left: 2.042816e-04	ci right 2.319626e-04	k: 967	n:4440000
KS ci ratio: 7.996361e-03	ci left: 5.114129e-02	ci right 5.155209e-02	k: 227978	n:4440000
ACVR1B   4440000 perm   9772 sec   (454 perm/sec)   p_kst 5.134640e-02   p_cons 2.177928e-04   p_joint 7.144144e-04

Joint ci ratio: 6.950012e-02	ci left: 6.895499e-04	ci right 7.394181e-04	k: 3178	n:4450000
Cons ci ratio: 1.259799e-01	ci left: 2.038226e-04	ci right 2.314414e-04	k: 967	n:4450000
KS ci ratio: 7.987416e-03	ci left: 5.114097e-02	ci right 5.155130e-02	k: 228489	n:4450000
ACVR1B   4450000 perm   9814 sec   (453 perm/sec)   p_kst 5.134584e-02   p_cons 2.173034e-04   p_joint 7.141573e-04

Joint ci ratio: 6.776259e-02	ci left: 7.243650e-04	ci right 7.753899e-04	k: 3343	n:4460000
Cons ci ratio: 1.258499e-01	ci left: 2.037999e-04	ci right 2.313850e-04	k: 969	n:4460000
KS ci ratio: 7.978778e-03	ci left: 5.113729e-02	ci right 5.154715e-02	k: 228985	n:4460000
ACVR1B   4460000 perm   9857 sec   (452 perm/sec)   p_kst 5.134193e-02   p_cons 2.172646e-04   p_joint 7.495516e-04

Joint ci ratio: 6.764130e-02	ci left: 7.253836e-04	ci right 7.763852e-04	k: 3355	n:4470000
Cons ci ratio: 1.257851e-01	ci left: 2.035606e-04	ci right 2.310981e-04	k: 970	n:4470000
KS ci ratio: 7.969910e-03	ci left: 5.113675e-02	ci right 5.154615e-02	k: 229495	n:4470000
ACVR1B   4470000 perm   9899 sec   (452 perm/sec)   p_kst 5.134116e-02   p_cons 2.170022e-04   p_joint 7.505593e-04

Joint ci ratio: 6.756082e-02	ci left: 7.255200e-04	ci right 7.764681e-04	k: 3363	n:4480000
Cons ci ratio: 1.256558e-01	ci left: 2.035386e-04	ci right 2.310427e-04	k: 972	n:4480000
KS ci ratio: 7.960708e-03	ci left: 5.114068e-02	ci right 5.154964e-02	k: 230025	n:4480000
ACVR1B   4480000 perm   9942 sec   (451 perm/sec)   p_kst 5.134487e-02   p_cons 2.169643e-04   p_joint 7.506696e-04

Joint ci ratio: 6.747061e-02	ci left: 7.258748e-04	ci right 7.767771e-04	k: 3372	n:4490000
Cons ci ratio: 1.253983e-01	ci left: 2.039482e-04	ci right 2.314470e-04	k: 976	n:4490000
KS ci ratio: 7.951846e-03	ci left: 5.114080e-02	ci right 5.154931e-02	k: 230538	n:4490000
ACVR1B   4490000 perm   9985 sec   (450 perm/sec)   p_kst 5.134477e-02   p_cons 2.173719e-04   p_joint 7.510022e-04

Joint ci ratio: 6.735088e-02	ci left: 7.268834e-04	ci right 7.777625e-04	k: 3384	n:4500000
Cons ci ratio: 1.251423e-01	ci left: 2.043560e-04	ci right 2.318494e-04	k: 980	n:4500000
KS ci ratio: 7.943268e-03	ci left: 5.113783e-02	ci right 5.154586e-02	k: 231037	n:4500000
ACVR1B   4500000 perm   10028 sec   (449 perm/sec)   p_kst 5.134156e-02   p_cons 2.177778e-04   p_joint 7.520000e-04

Joint ci ratio: 6.728135e-02	ci left: 7.267977e-04	ci right 7.776162e-04	k: 3391	n:4510000
Cons ci ratio: 1.248879e-01	ci left: 2.047621e-04	ci right 2.322499e-04	k: 984	n:4510000
KS ci ratio: 7.933814e-03	ci left: 5.114593e-02	ci right 5.155354e-02	k: 231586	n:4510000
ACVR1B   4510000 perm   10072 sec   (448 perm/sec)   p_kst 5.134945e-02   p_cons 2.181818e-04   p_joint 7.518847e-04

Joint ci ratio: 6.722194e-02	ci left: 7.264949e-04	ci right 7.772456e-04	k: 3397	n:4520000
Cons ci ratio: 1.246982e-01	ci left: 2.049521e-04	ci right 2.324205e-04	k: 987	n:4520000
KS ci ratio: 7.925114e-03	ci left: 5.114516e-02	ci right 5.155232e-02	k: 232095	n:4520000
ACVR1B   4520000 perm   10115 sec   (447 perm/sec)   p_kst 5.134845e-02   p_cons 2.183628e-04   p_joint 7.515487e-04

Joint ci ratio: 6.710352e-02	ci left: 7.274956e-04	ci right 7.782233e-04	k: 3409	n:4530000
Cons ci ratio: 1.245722e-01	ci left: 2.049274e-04	ci right 2.323627e-04	k: 989	n:4530000
KS ci ratio: 7.916209e-03	ci left: 5.114726e-02	ci right 5.155398e-02	k: 232617	n:4530000
ACVR1B   4530000 perm   10157 sec   (446 perm/sec)   p_kst 5.135033e-02   p_cons 2.183223e-04   p_joint 7.525386e-04

Joint ci ratio: 6.704457e-02	ci left: 7.271927e-04	ci right 7.778529e-04	k: 3415	n:4540000
Cons ci ratio: 1.245722e-01	ci left: 2.044760e-04	ci right 2.318509e-04	k: 989	n:4540000
KS ci ratio: 7.907691e-03	ci left: 5.114496e-02	ci right 5.155121e-02	k: 233119	n:4540000
ACVR1B   4540000 perm   10203 sec   (445 perm/sec)   p_kst 5.134780e-02   p_cons 2.178414e-04   p_joint 7.522026e-04

Joint ci ratio: 6.695642e-02	ci left: 7.275393e-04	ci right 7.781545e-04	k: 3424	n:4550000
Cons ci ratio: 1.245722e-01	ci left: 2.040266e-04	ci right 2.313413e-04	k: 989	n:4550000
KS ci ratio: 7.898809e-03	ci left: 5.114749e-02	ci right 5.155330e-02	k: 233643	n:4550000
ACVR1B   4550000 perm   10246 sec   (444 perm/sec)   p_kst 5.135011e-02   p_cons 2.173626e-04   p_joint 7.525275e-04

Joint ci ratio: 6.681994e-02	ci left: 7.289627e-04	ci right 7.795695e-04	k: 3438	n:4560000
Cons ci ratio: 1.241964e-01	ci left: 2.048540e-04	ci right 2.321907e-04	k: 995	n:4560000
KS ci ratio: 7.889531e-03	ci left: 5.115526e-02	ci right 5.156066e-02	k: 234191	n:4560000
ACVR1B   4560000 perm   10288 sec   (443 perm/sec)   p_kst 5.135768e-02   p_cons 2.182018e-04   p_joint 7.539474e-04

Joint ci ratio: 6.687841e-02	ci left: 7.260766e-04	ci right 7.765288e-04	k: 3432	n:4570000
Cons ci ratio: 1.240097e-01	ci left: 2.050418e-04	ci right 2.323595e-04	k: 998	n:4570000
KS ci ratio: 7.880958e-03	ci left: 5.115470e-02	ci right 5.155965e-02	k: 234701	n:4570000
ACVR1B   4570000 perm   10331 sec   (442 perm/sec)   p_kst 5.135689e-02   p_cons 2.183807e-04   p_joint 7.509847e-04

Joint ci ratio: 6.682005e-02	ci left: 7.257794e-04	ci right 7.761653e-04	k: 3438	n:4580000
Cons ci ratio: 1.237622e-01	ci left: 2.054404e-04	ci right 2.327525e-04	k: 1002	n:4580000
KS ci ratio: 7.871883e-03	ci left: 5.116068e-02	ci right 5.156521e-02	k: 235241	n:4580000
ACVR1B   4580000 perm   10377 sec   (441 perm/sec)   p_kst 5.136266e-02   p_cons 2.187773e-04   p_joint 7.506550e-04

Joint ci ratio: 6.678125e-02	ci left: 7.250551e-04	ci right 7.753603e-04	k: 3442	n:4590000
Cons ci ratio: 1.236390e-01	ci left: 2.054151e-04	ci right 2.326947e-04	k: 1004	n:4590000
KS ci ratio: 7.863139e-03	ci left: 5.116294e-02	ci right 5.156704e-02	k: 235764	n:4590000
ACVR1B   4590000 perm   10420 sec   (440 perm/sec)   p_kst 5.136471e-02   p_cons 2.187364e-04   p_joint 7.498911e-04

Joint ci ratio: 6.673283e-02	ci left: 7.245477e-04	ci right 7.747798e-04	k: 3447	n:4600000
Cons ci ratio: 1.236390e-01	ci left: 2.049686e-04	ci right 2.321888e-04	k: 1004	n:4600000
KS ci ratio: 7.854616e-03	ci left: 5.116280e-02	ci right 5.156646e-02	k: 236276	n:4600000
ACVR1B   4600000 perm   10464 sec   (440 perm/sec)   p_kst 5.136435e-02   p_cons 2.182609e-04   p_joint 7.493478e-04

Joint ci ratio: 6.665555e-02	ci left: 7.246824e-04	ci right 7.748635e-04	k: 3455	n:4610000
Cons ci ratio: 1.235776e-01	ci left: 2.047341e-04	ci right 2.319088e-04	k: 1005	n:4610000
KS ci ratio: 7.846139e-03	ci left: 5.116245e-02	ci right 5.156567e-02	k: 236787	n:4610000
ACVR1B   4610000 perm   10511 sec   (439 perm/sec)   p_kst 5.136377e-02   p_cons 2.180043e-04   p_joint 7.494577e-04

Joint ci ratio: 6.661703e-02	ci left: 7.239652e-04	ci right 7.740665e-04	k: 3459	n:4620000
Cons ci ratio: 1.234549e-01	ci left: 2.047105e-04	ci right 2.318531e-04	k: 1007	n:4620000
KS ci ratio: 7.837776e-03	ci left: 5.116102e-02	ci right 5.156379e-02	k: 237293	n:4620000
ACVR1B   4620000 perm   10560 sec   (438 perm/sec)   p_kst 5.136212e-02   p_cons 2.179654e-04   p_joint 7.487013e-04

Joint ci ratio: 6.666531e-02	ci left: 7.213396e-04	ci right 7.712968e-04	k: 3454	n:4630000
Cons ci ratio: 1.233937e-01	ci left: 2.044777e-04	ci right 2.315750e-04	k: 1008	n:4630000
KS ci ratio: 7.828780e-03	ci left: 5.116778e-02	ci right 5.157015e-02	k: 237837	n:4630000
ACVR1B   4630000 perm   10607 sec   (437 perm/sec)   p_kst 5.136868e-02   p_cons 2.177106e-04   p_joint 7.460043e-04

Joint ci ratio: 6.659788e-02	ci left: 7.212685e-04	ci right 7.711683e-04	k: 3461	n:4640000
Cons ci ratio: 1.233326e-01	ci left: 2.042459e-04	ci right 2.312980e-04	k: 1009	n:4640000
KS ci ratio: 7.820092e-03	ci left: 5.117108e-02	ci right 5.157302e-02	k: 238365	n:4640000
ACVR1B   4640000 perm   10654 sec   (436 perm/sec)   p_kst 5.137177e-02   p_cons 2.174569e-04   p_joint 7.459052e-04

Joint ci ratio: 6.652106e-02	ci left: 7.214092e-04	ci right 7.712589e-04	k: 3469	n:4650000
Cons ci ratio: 1.232717e-01	ci left: 2.040151e-04	ci right 2.310223e-04	k: 1010	n:4650000
KS ci ratio: 7.811157e-03	ci left: 5.117779e-02	ci right 5.157933e-02	k: 238909	n:4650000
ACVR1B   4650000 perm   10699 sec   (435 perm/sec)   p_kst 5.137828e-02   p_cons 2.172043e-04   p_joint 7.460215e-04

Joint ci ratio: 6.740159e-02	ci left: 7.008709e-04	ci right 7.499675e-04	k: 3379	n:4660000
Cons ci ratio: 1.230892e-01	ci left: 2.042012e-04	ci right 2.311901e-04	k: 1013	n:4660000
KS ci ratio: 7.802578e-03	ci left: 5.118041e-02	ci right 5.158152e-02	k: 239434	n:4660000
ACVR1B   4660000 perm   10745 sec   (434 perm/sec)   p_kst 5.138069e-02   p_cons 2.173820e-04   p_joint 7.251073e-04

Joint ci ratio: 6.727230e-02	ci left: 7.021069e-04	ci right 7.511922e-04	k: 3392	n:4670000
Cons ci ratio: 1.228471e-01	ci left: 2.045941e-04	ci right 2.315780e-04	k: 1017	n:4670000
KS ci ratio: 7.794782e-03	ci left: 5.117361e-02	ci right 5.157427e-02	k: 239915	n:4670000
ACVR1B   4670000 perm   10790 sec   (433 perm/sec)   p_kst 5.137366e-02   p_cons 2.177730e-04   p_joint 7.263383e-04

Joint ci ratio: 6.742165e-02	ci left: 6.974555e-04	ci right 7.463280e-04	k: 3377	n:4680000
Cons ci ratio: 1.226664e-01	ci left: 2.047783e-04	ci right 2.317438e-04	k: 1020	n:4680000
KS ci ratio: 7.786206e-03	ci left: 5.117687e-02	ci right 5.157711e-02	k: 240443	n:4680000
ACVR1B   4680000 perm   10834 sec   (432 perm/sec)   p_kst 5.137671e-02   p_cons 2.179487e-04   p_joint 7.215812e-04

Joint ci ratio: 6.734195e-02	ci left: 6.976454e-04	ci right 7.464712e-04	k: 3385	n:4690000
Cons ci ratio: 1.223671e-01	ci left: 2.053751e-04	ci right 2.323485e-04	k: 1025	n:4690000
KS ci ratio: 7.777404e-03	ci left: 5.118330e-02	ci right 5.158314e-02	k: 240986	n:4690000
ACVR1B   4690000 perm   10877 sec   (431 perm/sec)   p_kst 5.138294e-02   p_cons 2.185501e-04   p_joint 7.217484e-04

Joint ci ratio: 6.753188e-02	ci left: 6.921866e-04	ci right 7.407723e-04	k: 3366	n:4700000
Cons ci ratio: 1.223672e-01	ci left: 2.049381e-04	ci right 2.318541e-04	k: 1025	n:4700000
KS ci ratio: 7.768970e-03	ci left: 5.118546e-02	ci right 5.158488e-02	k: 241509	n:4700000
ACVR1B   4700000 perm   10922 sec   (430 perm/sec)   p_kst 5.138489e-02   p_cons 2.180851e-04   p_joint 7.161702e-04

Joint ci ratio: 6.760229e-02	ci left: 6.892559e-04	ci right 7.376883e-04	k: 3359	n:4710000
Cons ci ratio: 1.222481e-01	ci left: 2.049147e-04	ci right 2.317995e-04	k: 1027	n:4710000
KS ci ratio: 7.761916e-03	ci left: 5.117066e-02	ci right 5.156959e-02	k: 241952	n:4710000
ACVR1B   4710000 perm   10969 sec   (429 perm/sec)   p_kst 5.136985e-02   p_cons 2.180467e-04   p_joint 7.131635e-04

Joint ci ratio: 6.755206e-02	ci left: 6.888370e-04	ci right 7.372026e-04	k: 3364	n:4720000
Cons ci ratio: 1.221887e-01	ci left: 2.046859e-04	ci right 2.315267e-04	k: 1028	n:4720000
KS ci ratio: 7.753296e-03	ci left: 5.117580e-02	ci right 5.157433e-02	k: 242489	n:4720000
ACVR1B   4720000 perm   11013 sec   (429 perm/sec)   p_kst 5.137479e-02   p_cons 2.177966e-04   p_joint 7.127119e-04

Joint ci ratio: 6.741193e-02	ci left: 6.902906e-04	ci right 7.386538e-04	k: 3378	n:4730000
Cons ci ratio: 1.220109e-01	ci left: 2.048680e-04	ci right 2.316908e-04	k: 1031	n:4730000
KS ci ratio: 7.744319e-03	ci left: 5.118577e-02	ci right 5.158391e-02	k: 243049	n:4730000
ACVR1B   4730000 perm   11060 sec   (428 perm/sec)   p_kst 5.138457e-02   p_cons 2.179704e-04   p_joint 7.141649e-04

Joint ci ratio: 6.731238e-02	ci left: 6.909085e-04	ci right 7.392407e-04	k: 3388	n:4740000
Cons ci ratio: 1.218340e-01	ci left: 2.050494e-04	ci right 2.318542e-04	k: 1034	n:4740000
KS ci ratio: 7.735993e-03	ci left: 5.118791e-02	ci right 5.158564e-02	k: 243572	n:4740000
ACVR1B   4740000 perm   11109 sec   (427 perm/sec)   p_kst 5.138650e-02   p_cons 2.181435e-04   p_joint 7.147679e-04

Joint ci ratio: 6.392837e-02	ci left: 7.656582e-04	ci right 8.164272e-04	k: 3756	n:4750000
Cons ci ratio: 1.216578e-01	ci left: 2.052301e-04	ci right 2.320169e-04	k: 1037	n:4750000
KS ci ratio: 7.728277e-03	ci left: 5.118268e-02	ci right 5.157997e-02	k: 244060	n:4750000
ACVR1B   4750000 perm   11156 sec   (426 perm/sec)   p_kst 5.138105e-02   p_cons 2.183158e-04   p_joint 7.907368e-04

Joint ci ratio: 6.386041e-02	ci left: 7.657035e-04	ci right 8.164195e-04	k: 3764	n:4760000
Cons ci ratio: 1.215992e-01	ci left: 2.050026e-04	ci right 2.317460e-04	k: 1038	n:4760000
KS ci ratio: 7.720285e-03	ci left: 5.118125e-02	ci right 5.157812e-02	k: 244566	n:4760000
ACVR1B   4760000 perm   11202 sec   (425 perm/sec)   p_kst 5.137941e-02   p_cons 2.180672e-04   p_joint 7.907563e-04

Joint ci ratio: 6.380960e-02	ci left: 7.653360e-04	ci right 8.159859e-04	k: 3770	n:4770000
Cons ci ratio: 1.214824e-01	ci left: 2.049794e-04	ci right 2.316921e-04	k: 1040	n:4770000
KS ci ratio: 7.712085e-03	ci left: 5.118276e-02	ci right 5.157921e-02	k: 245086	n:4770000
ACVR1B   4770000 perm   11249 sec   (424 perm/sec)   p_kst 5.138071e-02   p_cons 2.180294e-04   p_joint 7.903564e-04

Joint ci ratio: 6.368302e-02	ci left: 7.668230e-04	ci right 8.174669e-04	k: 3785	n:4780000
Cons ci ratio: 1.212496e-01	ci left: 2.053620e-04	ci right 2.320696e-04	k: 1044	n:4780000
KS ci ratio: 7.704077e-03	ci left: 5.118217e-02	ci right 5.157821e-02	k: 245596	n:4780000
ACVR1B   4780000 perm   11295 sec   (423 perm/sec)   p_kst 5.137992e-02   p_cons 2.184100e-04   p_joint 7.918410e-04

Joint ci ratio: 6.360746e-02	ci left: 7.670711e-04	ci right 8.176691e-04	k: 3794	n:4790000
Cons ci ratio: 1.210759e-01	ci left: 2.055406e-04	ci right 2.322304e-04	k: 1047	n:4790000
KS ci ratio: 7.696143e-03	ci left: 5.118096e-02	ci right 5.157658e-02	k: 246103	n:4790000
ACVR1B   4790000 perm   11341 sec   (422 perm/sec)   p_kst 5.137850e-02   p_cons 2.185804e-04   p_joint 7.920668e-04

Joint ci ratio: 6.355725e-02	ci left: 7.667032e-04	ci right 8.172355e-04	k: 3800	n:4800000
Cons ci ratio: 1.210182e-01	ci left: 2.053144e-04	ci right 2.319613e-04	k: 1048	n:4800000
KS ci ratio: 7.688233e-03	ci left: 5.117975e-02	ci right 5.157495e-02	k: 246610	n:4800000
ACVR1B   4800000 perm   11385 sec   (422 perm/sec)   p_kst 5.137708e-02   p_cons 2.183333e-04   p_joint 7.916667e-04

Joint ci ratio: 6.237769e-02	ci left: 7.947805e-04	ci right 8.461561e-04	k: 3945	n:4810000
Cons ci ratio: 1.209606e-01	ci left: 2.050892e-04	ci right 2.316932e-04	k: 1049	n:4810000
KS ci ratio: 7.680053e-03	ci left: 5.118229e-02	ci right 5.157709e-02	k: 247135	n:4810000
ACVR1B   4810000 perm   11431 sec   (421 perm/sec)   p_kst 5.137942e-02   p_cons 2.180873e-04   p_joint 8.201663e-04

Joint ci ratio: 6.232244e-02	ci left: 7.945612e-04	ci right 8.458755e-04	k: 3952	n:4820000
Cons ci ratio: 1.208456e-01	ci left: 2.050661e-04	ci right 2.316400e-04	k: 1051	n:4820000
KS ci ratio: 7.671802e-03	ci left: 5.118606e-02	ci right 5.158046e-02	k: 247666	n:4820000
ACVR1B   4820000 perm   11483 sec   (420 perm/sec)   p_kst 5.138299e-02   p_cons 2.180498e-04   p_joint 8.199170e-04

Joint ci ratio: 6.224375e-02	ci left: 7.949543e-04	ci right 8.462269e-04	k: 3962	n:4830000
Cons ci ratio: 1.205594e-01	ci left: 2.056454e-04	ci right 2.322268e-04	k: 1056	n:4830000
KS ci ratio: 7.663658e-03	ci left: 5.118878e-02	ci right 5.158278e-02	k: 248192	n:4830000
ACVR1B   4830000 perm   11528 sec   (419 perm/sec)   p_kst 5.138551e-02   p_cons 2.186335e-04   p_joint 8.202899e-04

Joint ci ratio: 6.213406e-02	ci left: 7.961594e-04	ci right 8.474160e-04	k: 3976	n:4840000
Cons ci ratio: 1.204455e-01	ci left: 2.056213e-04	ci right 2.321727e-04	k: 1058	n:4840000
KS ci ratio: 7.655929e-03	ci left: 5.118653e-02	ci right 5.158012e-02	k: 248694	n:4840000
ACVR1B   4840000 perm   11573 sec   (418 perm/sec)   p_kst 5.138306e-02   p_cons 2.185950e-04   p_joint 8.214876e-04

Joint ci ratio: 6.210286e-02	ci left: 7.953298e-04	ci right 8.465063e-04	k: 3980	n:4850000
Cons ci ratio: 1.203319e-01	ci left: 2.055973e-04	ci right 2.321188e-04	k: 1060	n:4850000
KS ci ratio: 7.648013e-03	ci left: 5.118698e-02	ci right 5.158016e-02	k: 249209	n:4850000
ACVR1B   4850000 perm   11618 sec   (417 perm/sec)   p_kst 5.138330e-02   p_cons 2.185567e-04   p_joint 8.206186e-04

Joint ci ratio: 6.207171e-02	ci left: 7.945036e-04	ci right 8.456003e-04	k: 3984	n:4860000
Cons ci ratio: 1.203319e-01	ci left: 2.051743e-04	ci right 2.316412e-04	k: 1060	n:4860000
KS ci ratio: 7.640348e-03	ci left: 5.118454e-02	ci right 5.157731e-02	k: 249710	n:4860000
ACVR1B   4860000 perm   11664 sec   (417 perm/sec)   p_kst 5.138066e-02   p_cons 2.181070e-04   p_joint 8.197531e-04

Joint ci ratio: 6.198620e-02	ci left: 7.950959e-04	ci right 8.461577e-04	k: 3995	n:4870000
Cons ci ratio: 1.202187e-01	ci left: 2.051513e-04	ci right 2.315885e-04	k: 1062	n:4870000
KS ci ratio: 7.632400e-03	ci left: 5.118601e-02	ci right 5.157838e-02	k: 250230	n:4870000
ACVR1B   4870000 perm   11710 sec   (416 perm/sec)   p_kst 5.138193e-02   p_cons 2.180698e-04   p_joint 8.203285e-04

Joint ci ratio: 6.191651e-02	ci left: 7.952823e-04	ci right 8.462966e-04	k: 4004	n:4880000
Cons ci ratio: 1.201058e-01	ci left: 2.051284e-04	ci right 2.315361e-04	k: 1064	n:4880000
KS ci ratio: 7.624445e-03	ci left: 5.118789e-02	ci right 5.157986e-02	k: 250752	n:4880000
ACVR1B   4880000 perm   11756 sec   (415 perm/sec)   p_kst 5.138361e-02   p_cons 2.180328e-04   p_joint 8.204918e-04

Joint ci ratio: 6.184705e-02	ci left: 7.954679e-04	ci right 8.464349e-04	k: 4013	n:4890000
Cons ci ratio: 1.198808e-01	ci left: 2.055024e-04	ci right 2.319052e-04	k: 1068	n:4890000
KS ci ratio: 7.616738e-03	ci left: 5.118690e-02	ci right 5.157846e-02	k: 251260	n:4890000
ACVR1B   4890000 perm   11804 sec   (414 perm/sec)   p_kst 5.138241e-02   p_cons 2.184049e-04   p_joint 8.206544e-04

Joint ci ratio: 6.489572e-02	ci left: 7.199309e-04	ci right 7.684173e-04	k: 3645	n:4900000
Cons ci ratio: 1.437999e-01	ci left: 1.407282e-04	ci right 1.627267e-04	k: 742	n:4900000
KS ci ratio: 7.609198e-03	ci left: 5.118408e-02	ci right 5.157523e-02	k: 251759	n:4900000
ACVR1B   4900000 perm   11854 sec   (413 perm/sec)   p_kst 5.137939e-02   p_cons 1.514286e-04   p_joint 7.438776e-04

Joint ci ratio: 6.483352e-02	ci left: 7.198672e-04	ci right 7.683011e-04	k: 3652	n:4910000
Cons ci ratio: 1.438000e-01	ci left: 1.404416e-04	ci right 1.623953e-04	k: 742	n:4910000
KS ci ratio: 7.601379e-03	ci left: 5.118513e-02	ci right 5.157589e-02	k: 252277	n:4910000
ACVR1B   4910000 perm   11900 sec   (413 perm/sec)   p_kst 5.138024e-02   p_cons 1.511202e-04   p_joint 7.437882e-04

Joint ci ratio: 6.180869e-02	ci left: 7.916180e-04	ci right 8.423058e-04	k: 4018	n:4920000
Cons ci ratio: 1.435105e-01	ci left: 1.407440e-04	ci right 1.626969e-04	k: 745	n:4920000
KS ci ratio: 7.593742e-03	ci left: 5.118415e-02	ci right 5.157451e-02	k: 252785	n:4920000
ACVR1B   4920000 perm   11949 sec   (412 perm/sec)   p_kst 5.137907e-02   p_cons 1.514228e-04   p_joint 8.166667e-04

Joint ci ratio: 6.173960e-02	ci left: 7.918097e-04	ci right 8.424510e-04	k: 4027	n:4930000
Cons ci ratio: 1.433185e-01	ci left: 1.408496e-04	ci right 1.627871e-04	k: 747	n:4930000
KS ci ratio: 7.586633e-03	ci left: 5.117670e-02	ci right 5.156663e-02	k: 253261	n:4930000
ACVR1B   4930000 perm   11999 sec   (411 perm/sec)   p_kst 5.137140e-02   p_cons 1.515213e-04   p_joint 8.168357e-04

Joint ci ratio: 6.164781e-02	ci left: 7.925985e-04	ci right 8.432122e-04	k: 4039	n:4940000
Cons ci ratio: 1.429368e-01	ci left: 1.413452e-04	ci right 1.632963e-04	k: 751	n:4940000
KS ci ratio: 7.578899e-03	ci left: 5.117756e-02	ci right 5.156710e-02	k: 253778	n:4940000
ACVR1B   4940000 perm   12046 sec   (410 perm/sec)   p_kst 5.137206e-02   p_cons 1.520243e-04   p_joint 8.176113e-04

Joint ci ratio: 6.160210e-02	ci left: 7.921907e-04	ci right 8.427396e-04	k: 4045	n:4950000
Cons ci ratio: 1.429368e-01	ci left: 1.410597e-04	ci right 1.629664e-04	k: 751	n:4950000
KS ci ratio: 7.571282e-03	ci left: 5.117721e-02	ci right 5.156635e-02	k: 254289	n:4950000
ACVR1B   4950000 perm   12093 sec   (409 perm/sec)   p_kst 5.137152e-02   p_cons 1.517172e-04   p_joint 8.171717e-04

Joint ci ratio: 6.198666e-02	ci left: 7.806685e-04	ci right 8.308043e-04	k: 3995	n:4960000
Cons ci ratio: 1.428419e-01	ci left: 1.409697e-04	ci right 1.628466e-04	k: 752	n:4960000
KS ci ratio: 7.563156e-03	ci left: 5.118370e-02	ci right 5.157247e-02	k: 254834	n:4960000
ACVR1B   4960000 perm   12139 sec   (409 perm/sec)   p_kst 5.137782e-02   p_cons 1.516129e-04   p_joint 8.054435e-04

Joint ci ratio: 6.232321e-02	ci left: 7.705802e-04	ci right 8.203464e-04	k: 3952	n:4970000
Cons ci ratio: 1.426526e-01	ci left: 1.410741e-04	ci right 1.629358e-04	k: 754	n:4970000
KS ci ratio: 7.555915e-03	ci left: 5.117912e-02	ci right 5.156748e-02	k: 255324	n:4970000
ACVR1B   4970000 perm   12191 sec   (408 perm/sec)   p_kst 5.137304e-02   p_cons 1.517103e-04   p_joint 7.951710e-04

Joint ci ratio: 6.226024e-02	ci left: 7.706143e-04	ci right 8.203306e-04	k: 3960	n:4980000
Cons ci ratio: 1.424640e-01	ci left: 1.411781e-04	ci right 1.630245e-04	k: 756	n:4980000
KS ci ratio: 7.548243e-03	ci left: 5.118037e-02	ci right 5.156835e-02	k: 255843	n:4980000
ACVR1B   4980000 perm   12241 sec   (407 perm/sec)   p_kst 5.137410e-02   p_cons 1.518072e-04   p_joint 7.951807e-04

Joint ci ratio: 6.217395e-02	ci left: 7.712401e-04	ci right 8.209253e-04	k: 3971	n:4990000
Cons ci ratio: 1.424640e-01	ci left: 1.408952e-04	ci right 1.626978e-04	k: 756	n:4990000
KS ci ratio: 7.540610e-03	ci left: 5.118141e-02	ci right 5.156901e-02	k: 256361	n:4990000
ACVR1B   4990000 perm   12288 sec   (406 perm/sec)   p_kst 5.137495e-02   p_cons 1.515030e-04   p_joint 7.957916e-04

Joint ci ratio: 5.823500e-02	ci left: 8.790298e-04	ci right 9.319509e-04	k: 4526	n:5000000
Cons ci ratio: 1.355647e-01	ci left: 1.558643e-04	ci right 1.787211e-04	k: 835	n:5000000
KS ci ratio: 7.532721e-03	ci left: 5.118605e-02	ci right 5.157327e-02	k: 256897	n:5000000
ACVR1B   5000000 perm   12336 sec   (405 perm/sec)   p_kst 5.137940e-02   p_cons 1.670000e-04   p_joint 9.052000e-04

Outputting figure to mutsig2_images.part000000000003/ACVR1B.15_1681_5000000_0.051379_0.000167_0.0009052.png
                gene_name: ACVR1B
               theta_stop: 0.14 
                    nperm: 5000000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.00017 
      ci_cons_bounds_left: 0.00016 
     ci_cons_bounds_right: 0.00018 
                  p_joint: 0.00091 
     ci_joint_bounds_left: 0.00088 
    ci_joint_bounds_right: 0.00093 

Current progress: 3 percent done.
ADAMTS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.649311e-02	ci left: 3.157228e-01	ci right 3.341792e-01	k: 3249	n:10000
Cons ci ratio: 3.045847e-02	ci left: 6.139190e-01	ci right 6.330091e-01	k: 6235	n:10000
KS ci ratio: 9.588261e-02	ci left: 1.362914e-01	ci right 1.501172e-01	k: 1431	n:10000
ADAMTS3   10000 perm   3 sec   (3899 perm/sec)   p_kst 1.431000e-01   p_cons 6.235000e-01   p_joint 3.249000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS3.15_3706_10000_0.1431_0.6235_0.3249.png
                gene_name: ADAMTS3
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 4 percent done.
ADAMTS18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.155970e-02	ci left: 2.795337e-01	ci right 2.973897e-01	k: 2884	n:10000
Cons ci ratio: 6.663364e-02	ci left: 2.484571e-01	ci right 2.656846e-01	k: 2570	n:10000
KS ci ratio: 6.046824e-02	ci left: 2.868652e-01	ci right 3.048539e-01	k: 2958	n:10000
ADAMTS18   10000 perm   3 sec   (3384 perm/sec)   p_kst 2.958000e-01   p_cons 2.570000e-01   p_joint 2.884000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS18.14_3758_10000_0.2958_0.257_0.2884.png
                gene_name: ADAMTS18
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 5 percent done.
ADAMTS20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.957627e-02	ci left: 3.750495e-01	ci right 3.942177e-01	k: 3846	n:10000
Cons ci ratio: 4.918069e-02	ci left: 3.788311e-01	ci right 3.980340e-01	k: 3884	n:10000
KS ci ratio: 6.947002e-02	ci left: 2.330389e-01	ci right 2.499119e-01	k: 2414	n:10000
ADAMTS20   10000 perm   4 sec   (2573 perm/sec)   p_kst 2.414000e-01   p_cons 3.884000e-01   p_joint 3.846000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS20.14_5889_10000_0.2414_0.3884_0.3846.png
                gene_name: ADAMTS20
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 7 percent done.
ADAM18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.227413e-02	ci left: 2.190177e-01	ci right 2.355415e-01	k: 2272	n:10000
Cons ci ratio: 1.180551e-01	ci left: 9.340841e-02	ci right 1.052262e-01	k: 992	n:10000
KS ci ratio: 4.497748e-02	ci left: 4.218634e-01	ci right 4.413764e-01	k: 4316	n:10000
ADAM18   10000 perm   2 sec   (4772 perm/sec)   p_kst 4.316000e-01   p_cons 9.920000e-02   p_joint 2.272000e-01

Joint ci ratio: 5.232140e-02	ci left: 2.133835e-01	ci right 2.248982e-01	k: 4382	n:20000
Cons ci ratio: 8.409164e-02	ci left: 9.386410e-02	ci right 1.021532e-01	k: 1959	n:20000
KS ci ratio: 3.184239e-02	ci left: 4.241721e-01	ci right 4.379479e-01	k: 8621	n:20000
ADAM18   20000 perm   5 sec   (4278 perm/sec)   p_kst 4.310500e-01   p_cons 9.795000e-02   p_joint 2.191000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM18.13_2300_20000_0.43105_0.09795_0.2191.png
                gene_name: ADAM18
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 8 percent done.
ADAM29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.568287e-02	ci left: 5.369808e-01	ci right 5.565920e-01	k: 5468	n:10000
Cons ci ratio: 4.464907e-02	ci left: 4.254529e-01	ci right 4.449849e-01	k: 4352	n:10000
KS ci ratio: 3.976252e-02	ci left: 4.829545e-01	ci right 5.026497e-01	k: 4928	n:10000
ADAM29   10000 perm   2 sec   (4701 perm/sec)   p_kst 4.928000e-01   p_cons 4.352000e-01   p_joint 5.468000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM29.12_2467_10000_0.4928_0.4352_0.5468.png
                gene_name: ADAM29
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 9 percent done.
ADAM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.540060e-02	ci left: 2.555781e-01	ci right 2.729595e-01	k: 2642	n:10000
Cons ci ratio: 7.350978e-02	ci left: 2.131958e-01	ci right 2.295668e-01	k: 2213	n:10000
KS ci ratio: 6.666854e-02	ci left: 2.482593e-01	ci right 2.654825e-01	k: 2568	n:10000
ADAM7   10000 perm   2 sec   (4507 perm/sec)   p_kst 2.568000e-01   p_cons 2.213000e-01   p_joint 2.642000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM7.12_2353_10000_0.2568_0.2213_0.2642.png
                gene_name: ADAM7
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 11 percent done.
ADAMTS16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.913424e-02	ci left: 7.997350e-01	ci right 8.152855e-01	k: 8076	n:10000
Cons ci ratio: 2.568545e-02	ci left: 6.905077e-01	ci right 7.085759e-01	k: 6996	n:10000
KS ci ratio: 3.600075e-02	ci left: 5.325743e-01	ci right 5.522010e-01	k: 5424	n:10000
ADAMTS16   10000 perm   2 sec   (4419 perm/sec)   p_kst 5.424000e-01   p_cons 6.996000e-01   p_joint 8.076000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS16.12_3767_10000_0.5424_0.6996_0.8076.png
                gene_name: ADAMTS16
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 12 percent done.
ADAMTS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
Cons ci ratio: 2.240477e-01	ci left: 2.636581e-02	ci right 3.311184e-02	k: 296	n:10000
KS ci ratio: 3.748370e-02	ci left: 5.124546e-01	ci right 5.321324e-01	k: 5223	n:10000
ADAMTS5   10000 perm   2 sec   (4529 perm/sec)   p_kst 5.223000e-01   p_cons 2.960000e-02   p_joint 1.131000e-01

Joint ci ratio: 8.513080e-02	ci left: 9.175502e-02	ci right 9.996291e-02	k: 1916	n:20000
Cons ci ratio: 1.570719e-01	ci left: 2.782361e-02	ci right 3.261426e-02	k: 603	n:20000
KS ci ratio: 2.622143e-02	ci left: 5.207525e-01	ci right 5.346394e-01	k: 10554	n:20000
ADAMTS5   20000 perm   5 sec   (4133 perm/sec)   p_kst 5.277000e-01   p_cons 3.015000e-02   p_joint 9.580000e-02

Joint ci ratio: 7.354714e-02	ci left: 8.330981e-02	ci right 8.970387e-02	k: 2594	n:30000
Cons ci ratio: 1.277417e-01	ci left: 2.848615e-02	ci right 3.240548e-02	k: 912	n:30000
KS ci ratio: 2.135443e-02	ci left: 5.233323e-01	ci right 5.346620e-01	k: 15870	n:30000
ADAMTS5   30000 perm   8 sec   (3911 perm/sec)   p_kst 5.290000e-01   p_cons 3.040000e-02   p_joint 8.646667e-02

Joint ci ratio: 5.992098e-02	ci left: 9.374653e-02	ci right 9.956217e-02	k: 3865	n:40000
Cons ci ratio: 1.112580e-01	ci left: 2.842294e-02	ci right 3.179574e-02	k: 1203	n:40000
KS ci ratio: 1.778746e-02	ci left: 5.434572e-01	ci right 5.532358e-01	k: 21934	n:40000
ADAMTS5   40000 perm   12 sec   (3427 perm/sec)   p_kst 5.483500e-01   p_cons 3.007500e-02   p_joint 9.662500e-02

Joint ci ratio: 4.790060e-02	ci left: 1.152835e-01	ci right 1.209610e-01	k: 5905	n:50000
Cons ci ratio: 9.883732e-02	ci left: 2.899053e-02	ci right 3.202430e-02	k: 1524	n:50000
KS ci ratio: 1.594023e-02	ci left: 5.430245e-01	ci right 5.517700e-01	k: 27370	n:50000
ADAMTS5   50000 perm   15 sec   (3409 perm/sec)   p_kst 5.474000e-01   p_cons 3.048000e-02   p_joint 1.181000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS5.12_2825_50000_0.5474_0.03048_0.1181.png
                gene_name: ADAMTS5
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 14 percent done.
ACVR2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.288572e-01	ci left: 2.523219e-02	ci right 3.184628e-02	k: 284	n:10000
Cons ci ratio: 4.962703e-01	ci left: 4.669135e-03	ci right 7.828899e-03	k: 61	n:10000
KS ci ratio: 1.389664e-01	ci left: 6.855690e-02	ci right 7.889307e-02	k: 736	n:10000
ACVR2A   10000 perm   2 sec   (5161 perm/sec)   p_kst 7.360000e-02   p_cons 6.100000e-03   p_joint 2.840000e-02

Joint ci ratio: 2.504519e-01	ci left: 1.058411e-02	ci right 1.366018e-02	k: 241	n:20000
Cons ci ratio: 3.582663e-01	ci left: 4.885950e-03	ci right 7.061454e-03	k: 118	n:20000
KS ci ratio: 9.787248e-02	ci left: 7.060469e-02	ci right 7.791966e-02	k: 1484	n:20000
ACVR2A   20000 perm   4 sec   (4649 perm/sec)   p_kst 7.420000e-02   p_cons 5.900000e-03   p_joint 1.205000e-02

Joint ci ratio: 2.278841e-01	ci left: 8.653395e-03	ci right 1.090973e-02	k: 292	n:30000
Cons ci ratio: 3.225177e-01	ci left: 4.110775e-03	ci right 5.720741e-03	k: 146	n:30000
KS ci ratio: 7.855931e-02	ci left: 7.361492e-02	ci right 7.966737e-02	k: 2298	n:30000
ACVR2A   30000 perm   7 sec   (4331 perm/sec)   p_kst 7.660000e-02   p_cons 4.866667e-03   p_joint 9.733333e-03

Joint ci ratio: 2.068304e-01	ci left: 7.979184e-03	ci right 9.843160e-03	k: 355	n:40000
Cons ci ratio: 2.623588e-01	ci left: 4.822176e-03	ci right 6.300997e-03	k: 221	n:40000
KS ci ratio: 6.826802e-02	ci left: 7.354444e-02	ci right 7.876729e-02	k: 3045	n:40000
ACVR2A   40000 perm   10 sec   (4142 perm/sec)   p_kst 7.612500e-02   p_cons 5.525000e-03   p_joint 8.875000e-03

Joint ci ratio: 2.438912e-01	ci left: 4.513293e-03	ci right 5.785203e-03	k: 256	n:50000
Cons ci ratio: 2.336056e-01	ci left: 4.945911e-03	ci right 6.272480e-03	k: 279	n:50000
KS ci ratio: 6.107392e-02	ci left: 7.379049e-02	ci right 7.845887e-02	k: 3805	n:50000
ACVR2A   50000 perm   13 sec   (3889 perm/sec)   p_kst 7.610000e-02   p_cons 5.580000e-03   p_joint 5.120000e-03

Joint ci ratio: 2.608407e-01	ci left: 3.261149e-03	ci right 4.254469e-03	k: 224	n:60000
Cons ci ratio: 2.113626e-01	ci left: 5.097510e-03	ci right 6.317716e-03	k: 341	n:60000
KS ci ratio: 5.453552e-02	ci left: 7.711707e-02	ci right 8.145706e-02	k: 4756	n:60000
ACVR2A   60000 perm   16 sec   (3813 perm/sec)   p_kst 7.926667e-02   p_cons 5.683333e-03   p_joint 3.733333e-03

Joint ci ratio: 2.620823e-01	ci left: 2.768476e-03	ci right 3.616391e-03	k: 222	n:70000
Cons ci ratio: 1.971806e-01	ci left: 5.060625e-03	ci right 6.180955e-03	k: 392	n:70000
KS ci ratio: 5.041043e-02	ci left: 7.750633e-02	ci right 8.152861e-02	k: 5565	n:70000
ACVR2A   70000 perm   19 sec   (3768 perm/sec)   p_kst 7.950000e-02   p_cons 5.600000e-03   p_joint 3.171429e-03

Joint ci ratio: 2.455704e-01	ci left: 2.785291e-03	ci right 3.576418e-03	k: 253	n:80000
Cons ci ratio: 1.820447e-01	ci left: 5.237795e-03	ci right 6.298530e-03	k: 460	n:80000
KS ci ratio: 4.700689e-02	ci left: 7.809198e-02	ci right 8.186355e-02	k: 6397	n:80000
ACVR2A   80000 perm   22 sec   (3721 perm/sec)   p_kst 7.996250e-02   p_cons 5.750000e-03   p_joint 3.162500e-03

Joint ci ratio: 1.773331e-01	ci left: 4.921029e-03	ci right 5.889048e-03	k: 485	n:90000
Cons ci ratio: 1.700940e-01	ci left: 5.367515e-03	ci right 6.375846e-03	k: 527	n:90000
KS ci ratio: 4.428428e-02	ci left: 7.831257e-02	ci right 8.187010e-02	k: 7207	n:90000
ACVR2A   90000 perm   24 sec   (3674 perm/sec)   p_kst 8.007778e-02   p_cons 5.855556e-03   p_joint 5.388889e-03

Joint ci ratio: 1.733073e-01	ci left: 4.648776e-03	ci right 5.540302e-03	k: 508	n:100000
Cons ci ratio: 1.637213e-01	ci left: 5.233192e-03	ci right 6.175826e-03	k: 569	n:100000
KS ci ratio: 4.193751e-02	ci left: 7.866247e-02	ci right 8.204192e-02	k: 8034	n:100000
ACVR2A   100000 perm   28 sec   (3632 perm/sec)   p_kst 8.034000e-02   p_cons 5.690000e-03   p_joint 5.080000e-03

Joint ci ratio: 1.733477e-01	ci left: 4.226078e-03	ci right 5.036744e-03	k: 508	n:110000
Cons ci ratio: 1.551101e-01	ci left: 5.324815e-03	ci right 6.228815e-03	k: 634	n:110000
KS ci ratio: 4.095219e-02	ci left: 7.531413e-02	ci right 7.847186e-02	k: 8457	n:110000
ACVR2A   110000 perm   31 sec   (3585 perm/sec)   p_kst 7.688182e-02   p_cons 5.763636e-03   p_joint 4.618182e-03

Joint ci ratio: 1.710350e-01	ci left: 3.985500e-03	ci right 4.738761e-03	k: 522	n:120000
Cons ci ratio: 1.470959e-01	ci left: 5.450413e-03	ci right 6.323726e-03	k: 705	n:120000
KS ci ratio: 3.922005e-02	ci left: 7.534081e-02	ci right 7.836302e-02	k: 9221	n:120000
ACVR2A   120000 perm   34 sec   (3530 perm/sec)   p_kst 7.684167e-02   p_cons 5.875000e-03   p_joint 4.350000e-03

Joint ci ratio: 1.688101e-01	ci left: 3.782002e-03	ci right 4.486554e-03	k: 536	n:130000
Cons ci ratio: 1.410318e-01	ci left: 5.490895e-03	ci right 6.331374e-03	k: 767	n:130000
KS ci ratio: 3.767427e-02	ci left: 7.542678e-02	ci right 7.833059e-02	k: 9993	n:130000
ACVR2A   130000 perm   37 sec   (3486 perm/sec)   p_kst 7.686923e-02   p_cons 5.900000e-03   p_joint 4.123077e-03

Joint ci ratio: 1.218710e-01	ci left: 6.888445e-03	ci right 7.789284e-03	k: 1026	n:140000
Cons ci ratio: 1.365742e-01	ci left: 5.450317e-03	ci right 6.256070e-03	k: 818	n:140000
KS ci ratio: 3.629976e-02	ci left: 7.549540e-02	ci right 7.829358e-02	k: 10764	n:140000
ACVR2A   140000 perm   41 sec   (3438 perm/sec)   p_kst 7.688571e-02   p_cons 5.842857e-03   p_joint 7.328571e-03

Joint ci ratio: 1.203187e-01	ci left: 6.603704e-03	ci right 7.455519e-03	k: 1053	n:150000
Cons ci ratio: 1.318299e-01	ci left: 5.473539e-03	ci right 6.252414e-03	k: 878	n:150000
KS ci ratio: 3.511334e-02	ci left: 7.536477e-02	ci right 7.806495e-02	k: 11506	n:150000
ACVR2A   150000 perm   44 sec   (3392 perm/sec)   p_kst 7.670667e-02   p_cons 5.853333e-03   p_joint 7.020000e-03

Joint ci ratio: 1.168265e-01	ci left: 6.579104e-03	ci right 7.401413e-03	k: 1117	n:160000
Cons ci ratio: 1.279599e-01	ci left: 5.457974e-03	ci right 6.210103e-03	k: 932	n:160000
KS ci ratio: 3.401806e-02	ci left: 7.532620e-02	ci right 7.793917e-02	k: 12260	n:160000
ACVR2A   160000 perm   49 sec   (3270 perm/sec)   p_kst 7.662500e-02   p_cons 5.825000e-03   p_joint 6.981250e-03

Joint ci ratio: 1.807584e-01	ci left: 2.509443e-03	ci right 3.013635e-03	k: 468	n:170000
Cons ci ratio: 1.185160e-01	ci left: 6.015008e-03	ci right 6.778443e-03	k: 1086	n:170000
KS ci ratio: 3.298909e-02	ci left: 7.542176e-02	ci right 7.795740e-02	k: 13036	n:170000
ACVR2A   170000 perm   53 sec   (3230 perm/sec)   p_kst 7.668235e-02   p_cons 6.388235e-03   p_joint 2.752941e-03

Joint ci ratio: 1.409641e-01	ci left: 3.976145e-03	ci right 4.584436e-03	k: 769	n:180000
Cons ci ratio: 1.154265e-01	ci left: 5.999025e-03	ci right 6.739230e-03	k: 1145	n:180000
KS ci ratio: 3.201430e-02	ci left: 7.565667e-02	ci right 7.812365e-02	k: 13839	n:180000
ACVR2A   180000 perm   56 sec   (3190 perm/sec)   p_kst 7.688333e-02   p_cons 6.361111e-03   p_joint 4.272222e-03

Joint ci ratio: 1.382138e-01	ci left: 3.924327e-03	ci right 4.512011e-03	k: 800	n:190000
Cons ci ratio: 1.124728e-01	ci left: 5.995189e-03	ci right 6.714734e-03	k: 1206	n:190000
KS ci ratio: 3.121938e-02	ci left: 7.542365e-02	ci right 7.782087e-02	k: 14557	n:190000
ACVR2A   190000 perm   60 sec   (3152 perm/sec)   p_kst 7.661579e-02   p_cons 6.347368e-03   p_joint 4.210526e-03

Joint ci ratio: 1.365275e-01	ci left: 3.824660e-03	ci right 4.389862e-03	k: 820	n:200000
Cons ci ratio: 1.099970e-01	ci left: 5.962773e-03	ci right 6.661653e-03	k: 1261	n:200000
KS ci ratio: 3.045172e-02	ci left: 7.534869e-02	ci right 7.768360e-02	k: 15302	n:200000
ACVR2A   200000 perm   64 sec   (3109 perm/sec)   p_kst 7.651000e-02   p_cons 6.305000e-03   p_joint 4.100000e-03

Joint ci ratio: 1.340240e-01	ci left: 3.785151e-03	ci right 4.333440e-03	k: 851	n:210000
Cons ci ratio: 1.070255e-01	ci left: 6.007758e-03	ci right 6.691690e-03	k: 1332	n:210000
KS ci ratio: 2.971799e-02	ci left: 7.537612e-02	ci right 7.765463e-02	k: 16067	n:210000
ACVR2A   210000 perm   68 sec   (3071 perm/sec)   p_kst 7.650952e-02   p_cons 6.342857e-03   p_joint 4.052381e-03

Joint ci ratio: 1.253909e-01	ci left: 4.145317e-03	ci right 4.704228e-03	k: 972	n:220000
Cons ci ratio: 1.049237e-01	ci left: 5.973621e-03	ci right 6.639487e-03	k: 1386	n:220000
KS ci ratio: 2.864331e-02	ci left: 7.732974e-02	ci right 7.958139e-02	k: 17259	n:220000
ACVR2A   220000 perm   73 sec   (3033 perm/sec)   p_kst 7.845000e-02   p_cons 6.300000e-03   p_joint 4.418182e-03

Joint ci ratio: 1.229525e-01	ci left: 4.129382e-03	ci right 4.674528e-03	k: 1011	n:230000
Cons ci ratio: 1.025479e-01	ci left: 5.989177e-03	ci right 6.640750e-03	k: 1451	n:230000
KS ci ratio: 2.800239e-02	ci left: 7.741261e-02	ci right 7.961542e-02	k: 18057	n:230000
ACVR2A   230000 perm   77 sec   (2993 perm/sec)   p_kst 7.850870e-02   p_cons 6.308696e-03   p_joint 4.395652e-03

Joint ci ratio: 1.327357e-01	ci left: 3.380430e-03	ci right 3.865013e-03	k: 868	n:240000
Cons ci ratio: 1.001274e-01	ci left: 6.027970e-03	ci right 6.667374e-03	k: 1522	n:240000
KS ci ratio: 2.742001e-02	ci left: 7.739800e-02	ci right 7.955386e-02	k: 18833	n:240000
ACVR2A   240000 perm   81 sec   (2957 perm/sec)   p_kst 7.847083e-02   p_cons 6.341667e-03   p_joint 3.616667e-03

Joint ci ratio: 1.056165e-01	ci left: 5.190466e-03	ci right 5.773089e-03	k: 1369	n:250000
Cons ci ratio: 9.783968e-02	ci left: 6.067727e-03	ci right 6.695799e-03	k: 1594	n:250000
KS ci ratio: 2.686286e-02	ci left: 7.743667e-02	ci right 7.954911e-02	k: 19622	n:250000
ACVR2A   250000 perm   86 sec   (2911 perm/sec)   p_kst 7.848800e-02   p_cons 6.376000e-03   p_joint 5.476000e-03

Joint ci ratio: 1.042967e-01	ci left: 5.121905e-03	ci right 5.689206e-03	k: 1404	n:260000
Cons ci ratio: 9.631441e-02	ci left: 6.025738e-03	ci right 6.639191e-03	k: 1645	n:260000
KS ci ratio: 2.631108e-02	ci left: 7.762188e-02	ci right 7.969522e-02	k: 20450	n:260000
ACVR2A   260000 perm   90 sec   (2877 perm/sec)   p_kst 7.865385e-02   p_cons 6.326923e-03   p_joint 5.400000e-03

Joint ci ratio: 1.025252e-01	ci left: 5.108990e-03	ci right 5.664671e-03	k: 1453	n:270000
Cons ci ratio: 9.452255e-02	ci left: 6.030328e-03	ci right 6.632194e-03	k: 1708	n:270000
KS ci ratio: 2.583018e-02	ci left: 7.758023e-02	ci right 7.961401e-02	k: 21220	n:270000
ACVR2A   270000 perm   95 sec   (2845 perm/sec)   p_kst 7.859259e-02   p_cons 6.325926e-03   p_joint 5.381481e-03

Joint ci ratio: 1.018682e-01	ci left: 4.992634e-03	ci right 5.531970e-03	k: 1472	n:280000
Cons ci ratio: 9.248631e-02	ci left: 6.080048e-03	ci right 6.673096e-03	k: 1784	n:280000
KS ci ratio: 2.540043e-02	ci left: 7.739630e-02	ci right 7.939101e-02	k: 21949	n:280000
ACVR2A   280000 perm   100 sec   (2812 perm/sec)   p_kst 7.838929e-02   p_cons 6.371429e-03   p_joint 5.257143e-03

Joint ci ratio: 1.003150e-01	ci left: 4.975082e-03	ci right 5.503845e-03	k: 1518	n:290000
Cons ci ratio: 8.387378e-02	ci left: 7.162182e-03	ci right 7.792548e-03	k: 2167	n:290000
KS ci ratio: 2.496755e-02	ci left: 7.736246e-02	ci right 7.932183e-02	k: 22718	n:290000
ACVR2A   290000 perm   104 sec   (2780 perm/sec)   p_kst 7.833793e-02   p_cons 7.472414e-03   p_joint 5.234483e-03

Joint ci ratio: 1.005236e-01	ci left: 4.789725e-03	ci right 5.299909e-03	k: 1512	n:300000
Cons ci ratio: 8.272007e-02	ci left: 7.122534e-03	ci right 7.740372e-03	k: 2228	n:300000
KS ci ratio: 2.455834e-02	ci left: 7.731790e-02	ci right 7.924359e-02	k: 23483	n:300000
ACVR2A   300000 perm   109 sec   (2748 perm/sec)   p_kst 7.827667e-02   p_cons 7.426667e-03   p_joint 5.040000e-03

Joint ci ratio: 1.013427e-01	ci left: 4.559725e-03	ci right 5.049603e-03	k: 1488	n:310000
Cons ci ratio: 8.143374e-02	ci left: 7.117105e-03	ci right 7.724416e-03	k: 2299	n:310000
KS ci ratio: 2.416807e-02	ci left: 7.727966e-02	ci right 7.917339e-02	k: 24249	n:310000
ACVR2A   310000 perm   114 sec   (2718 perm/sec)   p_kst 7.822258e-02   p_cons 7.416129e-03   p_joint 4.800000e-03

Joint ci ratio: 1.001413e-01	ci left: 4.526895e-03	ci right 5.007141e-03	k: 1524	n:320000
Cons ci ratio: 8.032515e-02	ci left: 7.090647e-03	ci right 7.687077e-03	k: 2363	n:320000
KS ci ratio: 2.377727e-02	ci left: 7.735594e-02	ci right 7.922046e-02	k: 25051	n:320000
ACVR2A   320000 perm   119 sec   (2678 perm/sec)   p_kst 7.828438e-02   p_cons 7.384375e-03   p_joint 4.762500e-03

Joint ci ratio: 9.904535e-02	ci left: 4.490176e-03	ci right 4.961010e-03	k: 1558	n:330000
Cons ci ratio: 7.929353e-02	ci left: 7.059903e-03	ci right 7.645768e-03	k: 2425	n:330000
KS ci ratio: 2.340730e-02	ci left: 7.741274e-02	ci right 7.924921e-02	k: 25848	n:330000
ACVR2A   330000 perm   125 sec   (2642 perm/sec)   p_kst 7.832727e-02   p_cons 7.348485e-03   p_joint 4.721212e-03

Outputting figure to mutsig2_images.part000000000003/ACVR2A.10_1586_330000_0.078327_0.0073485_0.0047212.png
                gene_name: ACVR2A
               theta_stop: 0.099 
                    nperm: 330000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.0073 
      ci_cons_bounds_left: 0.0071 
     ci_cons_bounds_right: 0.0076 
                  p_joint: 0.0047 
     ci_joint_bounds_left: 0.0045 
    ci_joint_bounds_right: 0.0050 

Current progress: 15 percent done.
ADAMTS17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.149936e-01	ci left: 9.808295e-02	ci right 1.101488e-01	k: 1040	n:10000
Cons ci ratio: 7.653682e-02	ci left: 1.997852e-01	ci right 2.157854e-01	k: 2077	n:10000
KS ci ratio: 1.311543e-01	ci left: 7.659787e-02	ci right 8.744709e-02	k: 819	n:10000
ADAMTS17   10000 perm   2 sec   (4032 perm/sec)   p_kst 8.190000e-02   p_cons 2.077000e-01   p_joint 1.040000e-01

Joint ci ratio: 8.306188e-02	ci left: 9.602285e-02	ci right 1.043938e-01	k: 2003	n:20000
Cons ci ratio: 5.301910e-02	ci left: 2.089270e-01	ci right 2.203560e-01	k: 4292	n:20000
KS ci ratio: 9.120586e-02	ci left: 8.068090e-02	ci right 8.844038e-02	k: 1690	n:20000
ADAMTS17   20000 perm   6 sec   (3459 perm/sec)   p_kst 8.450000e-02   p_cons 2.146000e-01   p_joint 1.001500e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS17.10_3376_20000_0.0845_0.2146_0.10015.png
                gene_name: ADAMTS17
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 16 percent done.
ADAMTS19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.376601e-01	ci left: 6.981515e-02	ci right 8.023404e-02	k: 749	n:10000
Cons ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
KS ci ratio: 8.603533e-02	ci left: 1.644533e-01	ci right 1.793384e-01	k: 1718	n:10000
ADAMTS19   10000 perm   2 sec   (4332 perm/sec)   p_kst 1.718000e-01   p_cons 3.560000e-02   p_joint 7.490000e-02

Joint ci ratio: 1.103976e-01	ci left: 5.601725e-02	ci right 6.261160e-02	k: 1185	n:20000
Cons ci ratio: 1.366820e-01	ci left: 3.679429e-02	ci right 4.224062e-02	k: 789	n:20000
KS ci ratio: 5.976930e-02	ci left: 1.716833e-01	ci right 1.823108e-01	k: 3539	n:20000
ADAMTS19   20000 perm   5 sec   (3949 perm/sec)   p_kst 1.769500e-01   p_cons 3.945000e-02   p_joint 5.925000e-02

Joint ci ratio: 9.525516e-02	ci left: 5.088254e-02	ci right 5.600438e-02	k: 1602	n:30000
Cons ci ratio: 1.117486e-01	ci left: 3.719416e-02	ci right 4.162894e-02	k: 1181	n:30000
KS ci ratio: 4.794267e-02	ci left: 1.778462e-01	ci right 1.866154e-01	k: 5466	n:30000
ADAMTS19   30000 perm   8 sec   (3801 perm/sec)   p_kst 1.822000e-01   p_cons 3.936667e-02   p_joint 5.340000e-02

Joint ci ratio: 7.698277e-02	ci left: 5.852675e-02	ci right 6.323725e-02	k: 2434	n:40000
Cons ci ratio: 1.013869e-01	ci left: 3.419564e-02	ci right 3.787211e-02	k: 1440	n:40000
KS ci ratio: 4.131305e-02	ci left: 1.799157e-01	ci right 1.875303e-01	k: 7348	n:40000
ADAMTS19   40000 perm   11 sec   (3697 perm/sec)   p_kst 1.837000e-01   p_cons 3.600000e-02   p_joint 6.085000e-02

Joint ci ratio: 7.170537e-02	ci left: 5.437406e-02	ci right 5.843763e-02	k: 2819	n:50000
Cons ci ratio: 9.042984e-02	ci left: 3.457974e-02	ci right 3.787439e-02	k: 1810	n:50000
KS ci ratio: 3.686862e-02	ci left: 1.809893e-01	ci right 1.878074e-01	k: 9219	n:50000
ADAMTS19   50000 perm   14 sec   (3601 perm/sec)   p_kst 1.843800e-01   p_cons 3.620000e-02   p_joint 5.638000e-02

Outputting figure to mutsig2_images.part000000000003/ADAMTS19.10_3716_50000_0.18438_0.0362_0.05638.png
                gene_name: ADAMTS19
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.058 

Current progress: 18 percent done.
ADAMTS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.494214e-02	ci left: 7.028121e-01	ci right 7.206644e-01	k: 7118	n:10000
KS ci ratio: 2.482671e-02	ci left: 7.047290e-01	ci right 7.225464e-01	k: 7137	n:10000
ADAMTS2   10000 perm   2 sec   (4497 perm/sec)   p_kst 7.137000e-01   p_cons 7.118000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ADAMTS2.10_3800_10000_0.7137_0.7118_1.png
                gene_name: ADAMTS2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
ADAM12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.766254e-02	ci left: 3.937641e-01	ci right 4.130922e-01	k: 4034	n:10000
Cons ci ratio: 3.224372e-02	ci left: 5.867071e-01	ci right 6.060367e-01	k: 5964	n:10000
KS ci ratio: 6.100950e-02	ci left: 2.831991e-01	ci right 3.011221e-01	k: 2921	n:10000
ADAM12   10000 perm   2 sec   (4524 perm/sec)   p_kst 2.921000e-01   p_cons 5.964000e-01   p_joint 4.034000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM12.9_2930_10000_0.2921_0.5964_0.4034.png
                gene_name: ADAM12
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 20 percent done.
ADAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.826174e-02	ci left: 3.877898e-01	ci right 4.070700e-01	k: 3974	n:10000
Cons ci ratio: 1.116695e-01	ci left: 1.035416e-01	ci right 1.158868e-01	k: 1096	n:10000
KS ci ratio: 2.925720e-02	ci left: 6.327145e-01	ci right 6.516026e-01	k: 6422	n:10000
ADAM2   10000 perm   3 sec   (3984 perm/sec)   p_kst 6.422000e-01   p_cons 1.096000e-01   p_joint 3.974000e-01

Joint ci ratio: 3.970667e-02	ci left: 3.210959e-01	ci right 3.341543e-01	k: 6552	n:20000
Cons ci ratio: 8.092443e-02	ci left: 1.007350e-01	ci right 1.092802e-01	k: 2099	n:20000
KS ci ratio: 1.944807e-02	ci left: 6.635344e-01	ci right 6.766161e-01	k: 13402	n:20000
ADAM2   20000 perm   6 sec   (3631 perm/sec)   p_kst 6.701000e-01   p_cons 1.049500e-01   p_joint 3.276000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM2.9_2288_20000_0.6701_0.10495_0.3276.png
                gene_name: ADAM2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 22 percent done.
ADAMTS14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.151877e-02	ci left: 5.976484e-01	ci right 6.168891e-01	k: 6073	n:10000
Cons ci ratio: 4.164532e-02	ci left: 4.598782e-01	ci right 4.795394e-01	k: 4697	n:10000
KS ci ratio: 4.039597e-02	ci left: 4.750602e-01	ci right 4.947485e-01	k: 4849	n:10000
ADAMTS14   10000 perm   3 sec   (3661 perm/sec)   p_kst 4.849000e-01   p_cons 4.697000e-01   p_joint 6.073000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS14.9_3769_10000_0.4849_0.4697_0.6073.png
                gene_name: ADAMTS14
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 23 percent done.
ACSS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.939167e-02	ci left: 1.881605e-01	ci right 2.038170e-01	k: 1959	n:10000
Cons ci ratio: 4.161190e-02	ci left: 4.602776e-01	ci right 4.799398e-01	k: 4701	n:10000
KS ci ratio: 1.124773e-01	ci left: 1.021764e-01	ci right 1.144528e-01	k: 1082	n:10000
ACSS3   10000 perm   2 sec   (4884 perm/sec)   p_kst 1.082000e-01   p_cons 4.701000e-01   p_joint 1.959000e-01

Joint ci ratio: 5.953444e-02	ci left: 1.728196e-01	ci right 1.834741e-01	k: 3562	n:20000
Cons ci ratio: 2.935861e-02	ci left: 4.643115e-01	ci right 4.781968e-01	k: 9425	n:20000
KS ci ratio: 7.939116e-02	ci left: 1.043201e-01	ci right 1.129941e-01	k: 2172	n:20000
ACSS3   20000 perm   5 sec   (4407 perm/sec)   p_kst 1.086000e-01   p_cons 4.712500e-01   p_joint 1.781000e-01

Outputting figure to mutsig2_images.part000000000003/ACSS3.8_2125_20000_0.1086_0.47125_0.1781.png
                gene_name: ACSS3
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 24 percent done.
ACTBL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.721173e-02	ci left: 8.310374e-01	ci right 8.455650e-01	k: 8384	n:10000
KS ci ratio: 1.865892e-02	ci left: 8.075529e-01	ci right 8.228631e-01	k: 8153	n:10000
ACTBL2   10000 perm   2 sec   (5522 perm/sec)   p_kst 8.153000e-01   p_cons 8.384000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACTBL2.8_1135_10000_0.8153_0.8384_1.png
                gene_name: ACTBL2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
ACTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.371700e-02	ci left: 4.358254e-01	ci right 4.554063e-01	k: 4456	n:10000
Cons ci ratio: 1.939847e-02	ci left: 7.953712e-01	ci right 8.110517e-01	k: 8033	n:10000
KS ci ratio: 8.025848e-02	ci left: 1.848130e-01	ci right 2.003665e-01	k: 1925	n:10000
ACTN2   10000 perm   2 sec   (5114 perm/sec)   p_kst 1.925000e-01   p_cons 8.033000e-01   p_joint 4.456000e-01

Outputting figure to mutsig2_images.part000000000003/ACTN2.8_2769_10000_0.1925_0.8033_0.4456.png
                gene_name: ACTN2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 27 percent done.
ADAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.777013e-01	ci left: 4.226411e-02	ci right 5.060268e-02	k: 463	n:10000
Cons ci ratio: 1.893089e-02	ci left: 8.030849e-01	ci right 8.185336e-01	k: 8109	n:10000
KS ci ratio: 2.583643e-01	ci left: 1.958938e-02	ci right 2.549330e-02	k: 224	n:10000
ADAD1   10000 perm   2 sec   (4489 perm/sec)   p_kst 2.240000e-02   p_cons 8.109000e-01   p_joint 4.630000e-02

Joint ci ratio: 1.221762e-01	ci left: 4.595193e-02	ci right 5.198006e-02	k: 978	n:20000
Cons ci ratio: 1.349262e-02	ci left: 8.029265e-01	ci right 8.138837e-01	k: 16169	n:20000
KS ci ratio: 1.736334e-01	ci left: 2.268901e-02	ci right 2.705062e-02	k: 496	n:20000
ADAD1   20000 perm   5 sec   (4301 perm/sec)   p_kst 2.480000e-02   p_cons 8.084500e-01   p_joint 4.890000e-02

Joint ci ratio: 9.360105e-02	ci left: 5.264230e-02	ci right 5.784425e-02	k: 1656	n:30000
Cons ci ratio: 1.107523e-02	ci left: 8.022861e-01	ci right 8.112544e-01	k: 24204	n:30000
KS ci ratio: 1.381564e-01	ci left: 2.432522e-02	ci right 2.796733e-02	k: 783	n:30000
ADAD1   30000 perm   7 sec   (4213 perm/sec)   p_kst 2.610000e-02   p_cons 8.068000e-01   p_joint 5.520000e-02

Joint ci ratio: 8.995183e-02	ci left: 4.328259e-02	ci right 4.738375e-02	k: 1812	n:40000
Cons ci ratio: 9.606774e-03	ci left: 8.023925e-01	ci right 8.101630e-01	k: 32252	n:40000
KS ci ratio: 1.193741e-01	ci left: 2.468092e-02	ci right 2.783836e-02	k: 1049	n:40000
ADAD1   40000 perm   10 sec   (4099 perm/sec)   p_kst 2.622500e-02   p_cons 8.063000e-01   p_joint 4.530000e-02

Joint ci ratio: 7.317430e-02	ci left: 5.229034e-02	ci right 5.628161e-02	k: 2713	n:50000
Cons ci ratio: 8.618387e-03	ci left: 8.018620e-01	ci right 8.088226e-01	k: 40268	n:50000
KS ci ratio: 1.026489e-01	ci left: 2.688341e-02	ci right 2.981169e-02	k: 1416	n:50000
ADAD1   50000 perm   12 sec   (4024 perm/sec)   p_kst 2.832000e-02   p_cons 8.053600e-01   p_joint 5.426000e-02

Joint ci ratio: 6.714612e-02	ci left: 5.194235e-02	ci right 5.556763e-02	k: 3224	n:60000
Cons ci ratio: 7.896141e-03	ci left: 8.010186e-01	ci right 8.073853e-01	k: 48253	n:60000
KS ci ratio: 9.582572e-02	ci left: 2.583161e-02	ci right 2.844773e-02	k: 1627	n:60000
ADAD1   60000 perm   15 sec   (3954 perm/sec)   p_kst 2.711667e-02   p_cons 8.042167e-01   p_joint 5.373333e-02

Outputting figure to mutsig2_images.part000000000003/ADAD1.7_1775_60000_0.027117_0.80422_0.053733.png
                gene_name: ADAD1
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 28 percent done.
ADAM17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.975051e-02	ci left: 2.918206e-01	ci right 3.098956e-01	k: 3008	n:10000
Cons ci ratio: 7.237715e-02	ci left: 2.185242e-01	ci right 2.350353e-01	k: 2267	n:10000
KS ci ratio: 5.664796e-02	ci left: 3.145320e-01	ci right 3.329708e-01	k: 3237	n:10000
ADAM17   10000 perm   2 sec   (4643 perm/sec)   p_kst 3.237000e-01   p_cons 2.267000e-01   p_joint 3.008000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM17.7_2551_10000_0.3237_0.2267_0.3008.png
                gene_name: ADAM17
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 30 percent done.
ADAM28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.935905e-02	ci left: 4.880521e-01	ci right 5.077491e-01	k: 4979	n:10000
Cons ci ratio: 4.488595e-02	ci left: 4.228604e-01	ci right 4.423788e-01	k: 4326	n:10000
KS ci ratio: 4.465815e-02	ci left: 4.253532e-01	ci right 4.448846e-01	k: 4351	n:10000
ADAM28   10000 perm   2 sec   (4981 perm/sec)   p_kst 4.351000e-01   p_cons 4.326000e-01   p_joint 4.979000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM28.7_2476_10000_0.4351_0.4326_0.4979.png
                gene_name: ADAM28
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 31 percent done.
ADAM30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.590659e-02	ci left: 5.338761e-01	ci right 5.534984e-01	k: 5437	n:10000
Cons ci ratio: 2.019297e-02	ci left: 7.821871e-01	ci right 7.982435e-01	k: 7903	n:10000
KS ci ratio: 4.896405e-02	ci left: 3.809211e-01	ci right 4.001427e-01	k: 3905	n:10000
ADAM30   10000 perm   2 sec   (5095 perm/sec)   p_kst 3.905000e-01   p_cons 7.903000e-01   p_joint 5.437000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM30.7_2377_10000_0.3905_0.7903_0.5437.png
                gene_name: ADAM30
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 32 percent done.
ADAM32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.693422e-02	ci left: 1.981098e-01	ci right 2.140618e-01	k: 2060	n:10000
Cons ci ratio: 1.413391e-02	ci left: 8.785849e-01	ci right 8.911899e-01	k: 8850	n:10000
KS ci ratio: 1.070134e-01	ci left: 1.119342e-01	ci right 1.246891e-01	k: 1182	n:10000
ADAM32   10000 perm   2 sec   (4207 perm/sec)   p_kst 1.182000e-01   p_cons 8.850000e-01   p_joint 2.060000e-01

Joint ci ratio: 5.150205e-02	ci left: 2.187822e-01	ci right 2.303980e-01	k: 4491	n:20000
Cons ci ratio: 1.015186e-02	ci left: 8.771943e-01	ci right 8.861944e-01	k: 17635	n:20000
KS ci ratio: 7.538251e-02	ci left: 1.145924e-01	ci right 1.236187e-01	k: 2381	n:20000
ADAM32   20000 perm   5 sec   (4133 perm/sec)   p_kst 1.190500e-01   p_cons 8.817500e-01   p_joint 2.245500e-01

Outputting figure to mutsig2_images.part000000000003/ADAM32.7_2464_20000_0.11905_0.88175_0.22455.png
                gene_name: ADAM32
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 34 percent done.
ACSL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.374944e-02	ci left: 8.842156e-01	ci right 8.965559e-01	k: 8905	n:10000
KS ci ratio: 1.771708e-02	ci left: 8.228987e-01	ci right 8.377084e-01	k: 8304	n:10000
ACSL6   10000 perm   2 sec   (4956 perm/sec)   p_kst 8.304000e-01   p_cons 8.905000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACSL6.6_2335_10000_0.8304_0.8905_1.png
                gene_name: ACSL6
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
ACSS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.980043e-02	ci left: 6.241692e-01	ci right 6.431529e-01	k: 6337	n:10000
Cons ci ratio: 5.920124e-02	ci left: 2.956866e-01	ci right 3.138273e-01	k: 3047	n:10000
KS ci ratio: 3.064035e-02	ci left: 6.111060e-01	ci right 6.302237e-01	k: 6207	n:10000
ACSS2   10000 perm   2 sec   (5251 perm/sec)   p_kst 6.207000e-01   p_cons 3.047000e-01   p_joint 6.337000e-01

Outputting figure to mutsig2_images.part000000000003/ACSS2.6_2221_10000_0.6207_0.3047_0.6337.png
                gene_name: ACSS2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 36 percent done.
ACTL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.407262e-02	ci left: 4.318355e-01	ci right 4.513986e-01	k: 4416	n:10000
Cons ci ratio: 3.944572e-02	ci left: 4.869525e-01	ci right 5.066494e-01	k: 4968	n:10000
KS ci ratio: 6.596015e-02	ci left: 2.523139e-01	ci right 2.696255e-01	k: 2609	n:10000
ACTL9   10000 perm   2 sec   (5764 perm/sec)   p_kst 2.609000e-01   p_cons 4.968000e-01   p_joint 4.416000e-01

Outputting figure to mutsig2_images.part000000000003/ACTL9.6_1255_10000_0.2609_0.4968_0.4416.png
                gene_name: ACTL9
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 38 percent done.
ADAM11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.463008e-02	ci left: 5.518081e-01	ci right 5.713560e-01	k: 5616	n:10000
Cons ci ratio: 5.540393e-02	ci left: 3.242591e-01	ci right 3.428380e-01	k: 3335	n:10000
KS ci ratio: 9.344901e-03	ci left: 9.417001e-01	ci right 9.506377e-01	k: 9463	n:10000
ADAM11   10000 perm   2 sec   (5307 perm/sec)   p_kst 9.463000e-01   p_cons 3.335000e-01   p_joint 5.616000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM11.6_2418_10000_0.9463_0.3335_0.5616.png
                gene_name: ADAM11
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 39 percent done.
ADAM15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.906570e-02	ci left: 1.894406e-01	ci right 2.051361e-01	k: 1972	n:10000
Cons ci ratio: 6.577260e-02	ci left: 2.534019e-01	ci right 2.707369e-01	k: 2620	n:10000
KS ci ratio: 7.677004e-02	ci left: 1.987996e-01	ci right 2.147715e-01	k: 2067	n:10000
ADAM15   10000 perm   2 sec   (4237 perm/sec)   p_kst 2.067000e-01   p_cons 2.620000e-01   p_joint 1.972000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM15.6_2684_10000_0.2067_0.262_0.1972.png
                gene_name: ADAM15
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 41 percent done.
ADAM21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.704372e-02	ci left: 6.682378e-01	ci right 6.866587e-01	k: 6775	n:10000
Cons ci ratio: 8.467404e-03	ci left: 9.512738e-01	ci right 9.594583e-01	k: 9555	n:10000
KS ci ratio: 4.954487e-02	ci left: 3.753480e-01	ci right 3.945190e-01	k: 3849	n:10000
ADAM21   10000 perm   2 sec   (5271 perm/sec)   p_kst 3.849000e-01   p_cons 9.555000e-01   p_joint 6.775000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM21.6_2173_10000_0.3849_0.9555_0.6775.png
                gene_name: ADAM21
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 42 percent done.
ADAM22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.664465e-02	ci left: 1.624881e-01	ci right 1.773047e-01	k: 1698	n:10000
Cons ci ratio: 1.202174e-01	ci left: 9.029438e-02	ci right 1.019421e-01	k: 960	n:10000
KS ci ratio: 7.886657e-02	ci left: 1.902285e-01	ci right 2.059478e-01	k: 1980	n:10000
ADAM22   10000 perm   2 sec   (5015 perm/sec)   p_kst 1.980000e-01   p_cons 9.600000e-02   p_joint 1.698000e-01

Joint ci ratio: 7.646149e-02	ci left: 1.116914e-01	ci right 1.206206e-01	k: 2322	n:20000
Cons ci ratio: 9.050606e-02	ci left: 8.185600e-02	ci right 8.966493e-02	k: 1714	n:20000
KS ci ratio: 5.708264e-02	ci left: 1.853251e-01	ci right 1.962649e-01	k: 3815	n:20000
ADAM22   20000 perm   4 sec   (4468 perm/sec)   p_kst 1.907500e-01   p_cons 8.570000e-02   p_joint 1.161000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM22.6_2940_20000_0.19075_0.0857_0.1161.png
                gene_name: ADAM22
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 43 percent done.
ADAMTS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.179031e-02	ci left: 5.935323e-01	ci right 6.128076e-01	k: 6032	n:10000
Cons ci ratio: 6.521613e-02	ci left: 2.566662e-01	ci right 2.740706e-01	k: 2653	n:10000
KS ci ratio: 2.954424e-02	ci left: 6.281901e-01	ci right 6.471296e-01	k: 6377	n:10000
ADAMTS1   10000 perm   2 sec   (5286 perm/sec)   p_kst 6.377000e-01   p_cons 2.653000e-01   p_joint 6.032000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS1.6_2940_10000_0.6377_0.2653_0.6032.png
                gene_name: ADAMTS1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 45 percent done.
ADAMTS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.490358e-01	ci left: 5.985938e-02	ci right 6.959607e-02	k: 646	n:10000
Cons ci ratio: 8.805305e-02	ci left: 1.580679e-01	ci right 1.727275e-01	k: 1653	n:10000
KS ci ratio: 2.268173e-01	ci left: 2.570435e-02	ci right 3.237377e-02	k: 289	n:10000
ADAMTS6   10000 perm   2 sec   (4772 perm/sec)   p_kst 2.890000e-02   p_cons 1.653000e-01   p_joint 6.460000e-02

Joint ci ratio: 1.730984e-01	ci left: 2.283264e-02	ci right 2.720694e-02	k: 499	n:20000
Cons ci ratio: 6.249033e-02	ci left: 1.592380e-01	ci right 1.695598e-01	k: 3287	n:20000
KS ci ratio: 1.541997e-01	ci left: 2.888197e-02	ci right 3.375555e-02	k: 625	n:20000
ADAMTS6   20000 perm   5 sec   (4261 perm/sec)   p_kst 3.125000e-02   p_cons 1.643500e-01   p_joint 2.495000e-02

Joint ci ratio: 1.102994e-01	ci left: 3.816745e-02	ci right 4.265545e-02	k: 1211	n:30000
Cons ci ratio: 5.089994e-02	ci left: 1.608487e-01	ci right 1.692830e-01	k: 4951	n:30000
KS ci ratio: 1.251497e-01	ci left: 2.968161e-02	ci right 3.367643e-02	k: 949	n:30000
ADAMTS6   30000 perm   7 sec   (4036 perm/sec)   p_kst 3.163333e-02   p_cons 1.650333e-01   p_joint 4.036667e-02

Joint ci ratio: 9.314515e-02	ci left: 4.042168e-02	ci right 4.439510e-02	k: 1695	n:40000
Cons ci ratio: 4.413547e-02	ci left: 1.610771e-01	ci right 1.683717e-01	k: 6588	n:40000
KS ci ratio: 1.115449e-01	ci left: 2.827700e-02	ci right 3.164170e-02	k: 1197	n:40000
ADAMTS6   40000 perm   10 sec   (3926 perm/sec)   p_kst 2.992500e-02   p_cons 1.647000e-01   p_joint 4.237500e-02

Joint ci ratio: 8.469798e-02	ci left: 3.933741e-02	ci right 4.283612e-02	k: 2053	n:50000
Cons ci ratio: 4.042982e-02	ci left: 1.550509e-01	ci right 1.614688e-01	k: 7912	n:50000
KS ci ratio: 1.002705e-01	ci left: 2.817084e-02	ci right 3.116409e-02	k: 1482	n:50000
ADAMTS6   50000 perm   13 sec   (3829 perm/sec)   p_kst 2.964000e-02   p_cons 1.582400e-01   p_joint 4.106000e-02

Joint ci ratio: 8.053819e-02	ci left: 3.645150e-02	ci right 3.952673e-02	k: 2278	n:60000
Cons ci ratio: 3.676841e-02	ci left: 1.563304e-01	ci right 1.622026e-01	k: 9555	n:60000
KS ci ratio: 9.208492e-02	ci left: 2.796505e-02	ci right 3.068074e-02	k: 1758	n:60000
ADAMTS6   60000 perm   16 sec   (3719 perm/sec)   p_kst 2.930000e-02   p_cons 1.592500e-01   p_joint 3.796667e-02

Outputting figure to mutsig2_images.part000000000003/ADAMTS6.6_3450_60000_0.0293_0.15925_0.037967.png
                gene_name: ADAMTS6
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.040 

Current progress: 46 percent done.
ACSM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.959722e-02	ci left: 3.748505e-01	ci right 3.940169e-01	k: 3844	n:10000
Cons ci ratio: 1.720538e-02	ci left: 8.311391e-01	ci right 8.456632e-01	k: 8385	n:10000
KS ci ratio: 7.342460e-02	ci left: 2.135905e-01	ci right 2.299719e-01	k: 2217	n:10000
ACSM1   10000 perm   2 sec   (5463 perm/sec)   p_kst 2.217000e-01   p_cons 8.385000e-01   p_joint 3.844000e-01

Outputting figure to mutsig2_images.part000000000003/ACSM1.5_1786_10000_0.2217_0.8385_0.3844.png
                gene_name: ACSM1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 47 percent done.
ACTL6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.889213e-02	ci left: 3.816178e-01	ci right 4.008456e-01	k: 3912	n:10000
Cons ci ratio: 2.377273e-02	ci left: 7.222933e-01	ci right 7.397719e-01	k: 7311	n:10000
KS ci ratio: 5.864716e-02	ci left: 2.996526e-01	ci right 3.178589e-01	k: 3087	n:10000
ACTL6A   10000 perm   2 sec   (5350 perm/sec)   p_kst 3.087000e-01   p_cons 7.311000e-01   p_joint 3.912000e-01

Outputting figure to mutsig2_images.part000000000003/ACTL6A.5_1346_10000_0.3087_0.7311_0.3912.png
                gene_name: ACTL6A
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 49 percent done.
ACTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.016777e-02	ci left: 3.694779e-01	ci right 3.885927e-01	k: 3790	n:10000
Cons ci ratio: 1.623630e-02	ci left: 8.465185e-01	ci right 8.604749e-01	k: 8536	n:10000
KS ci ratio: 6.877557e-02	ci left: 2.366945e-01	ci right 2.536542e-01	k: 2451	n:10000
ACTN1   10000 perm   2 sec   (5662 perm/sec)   p_kst 2.451000e-01   p_cons 8.536000e-01   p_joint 3.790000e-01

Outputting figure to mutsig2_images.part000000000003/ACTN1.5_2833_10000_0.2451_0.8536_0.379.png
                gene_name: ACTN1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 50 percent done.
ADAM23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.382384e-02	ci left: 2.650773e-01	ci right 2.826547e-01	k: 2738	n:10000
Cons ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
KS ci ratio: 6.618316e-02	ci left: 2.510282e-01	ci right 2.683120e-01	k: 2596	n:10000
ADAM23   10000 perm   2 sec   (4924 perm/sec)   p_kst 2.596000e-01   p_cons 1.864000e-01   p_joint 2.738000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM23.5_2603_10000_0.2596_0.1864_0.2738.png
                gene_name: ADAM23
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 51 percent done.
ACSM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.067321e-02	ci left: 7.741813e-01	ci right 7.904539e-01	k: 7824	n:10000
Cons ci ratio: 1.323674e-02	ci left: 8.915942e-01	ci right 9.035731e-01	k: 8977	n:10000
KS ci ratio: 3.738618e-02	ci left: 5.137554e-01	ci right 5.334308e-01	k: 5236	n:10000
ACSM5   10000 perm   2 sec   (5651 perm/sec)   p_kst 5.236000e-01   p_cons 8.977000e-01   p_joint 7.824000e-01

Outputting figure to mutsig2_images.part000000000003/ACSM5.4_1792_10000_0.5236_0.8977_0.7824.png
                gene_name: ACSM5
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 53 percent done.
ACTA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.300748e-02	ci left: 4.439070e-01	ci right 4.635200e-01	k: 4537	n:10000
Cons ci ratio: 4.013812e-02	ci left: 4.782576e-01	ci right 4.979493e-01	k: 4881	n:10000
KS ci ratio: 5.679055e-02	ci left: 3.134405e-01	ci right 3.318629e-01	k: 3226	n:10000
ACTA1   10000 perm   2 sec   (5979 perm/sec)   p_kst 3.226000e-01   p_cons 4.881000e-01   p_joint 4.537000e-01

Outputting figure to mutsig2_images.part000000000003/ACTA1.4_1158_10000_0.3226_0.4881_0.4537.png
                gene_name: ACTA1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 54 percent done.
ACTL7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.764659e-02	ci left: 1.951537e-01	ci right 2.110196e-01	k: 2030	n:10000
Cons ci ratio: 1.523350e-01	ci left: 5.735153e-02	ci right 6.690551e-02	k: 620	n:10000
KS ci ratio: 2.976835e-02	ci left: 6.246718e-01	ci right 6.436500e-01	k: 6342	n:10000
ACTL7B   10000 perm   2 sec   (5415 perm/sec)   p_kst 6.342000e-01   p_cons 6.200000e-02   p_joint 2.030000e-01

Joint ci ratio: 6.602120e-02	ci left: 1.448802e-01	ci right 1.548218e-01	k: 2996	n:20000
Cons ci ratio: 1.066253e-01	ci left: 5.991522e-02	ci right 6.671242e-02	k: 1265	n:20000
KS ci ratio: 2.218332e-02	ci left: 6.027483e-01	ci right 6.163198e-01	k: 12191	n:20000
ACTL7B   20000 perm   4 sec   (4837 perm/sec)   p_kst 6.095500e-01   p_cons 6.325000e-02   p_joint 1.498000e-01

Joint ci ratio: 5.219967e-02	ci left: 1.540871e-01	ci right 1.623792e-01	k: 4746	n:30000
Cons ci ratio: 8.740425e-02	ci left: 6.008051e-02	ci right 6.560452e-02	k: 1884	n:30000
KS ci ratio: 1.814274e-02	ci left: 6.032172e-01	ci right 6.142950e-01	k: 18263	n:30000
ACTL7B   30000 perm   7 sec   (4471 perm/sec)   p_kst 6.087667e-01   p_cons 6.280000e-02   p_joint 1.582000e-01

Outputting figure to mutsig2_images.part000000000003/ACTL7B.4_1252_30000_0.60877_0.0628_0.1582.png
                gene_name: ACTL7B
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 55 percent done.
ACVR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.266640e-01	ci left: 8.183830e-02	ci right 9.300341e-02	k: 873	n:10000
Cons ci ratio: 3.134257e-01	ci left: 1.298624e-02	ci right 1.790194e-02	k: 153	n:10000
KS ci ratio: 9.244324e-02	ci left: 1.453096e-01	ci right 1.594935e-01	k: 1523	n:10000
ACVR1   10000 perm   2 sec   (5322 perm/sec)   p_kst 1.523000e-01   p_cons 1.530000e-02   p_joint 8.730000e-02

Joint ci ratio: 1.097109e-01	ci left: 5.669910e-02	ci right 6.332954e-02	k: 1199	n:20000
Cons ci ratio: 2.194697e-01	ci left: 1.397554e-02	ci right 1.746732e-02	k: 313	n:20000
KS ci ratio: 6.531773e-02	ci left: 1.475927e-01	ci right 1.576085e-01	k: 3051	n:20000
ACVR1   20000 perm   4 sec   (4778 perm/sec)   p_kst 1.525500e-01   p_cons 1.565000e-02   p_joint 5.995000e-02

Joint ci ratio: 1.010851e-01	ci left: 4.531547e-02	ci right 5.017259e-02	k: 1431	n:30000
Cons ci ratio: 1.795854e-01	ci left: 1.422811e-02	ci right 1.706682e-02	k: 468	n:30000
KS ci ratio: 5.206943e-02	ci left: 1.547466e-01	ci right 1.630529e-01	k: 4766	n:30000
ACVR1   30000 perm   7 sec   (4573 perm/sec)   p_kst 1.588667e-01   p_cons 1.560000e-02   p_joint 4.770000e-02

Joint ci ratio: 8.707274e-02	ci left: 4.612135e-02	ci right 5.034454e-02	k: 1928	n:40000
Cons ci ratio: 1.551904e-01	ci left: 1.448047e-02	ci right 1.694056e-02	k: 627	n:40000
KS ci ratio: 4.496746e-02	ci left: 1.560480e-01	ci right 1.632514e-01	k: 6385	n:40000
ACVR1   40000 perm   9 sec   (4423 perm/sec)   p_kst 1.596250e-01   p_cons 1.567500e-02   p_joint 4.820000e-02

Joint ci ratio: 5.981574e-02	ci left: 7.672907e-02	ci right 8.147993e-02	k: 3954	n:50000
Cons ci ratio: 1.415808e-01	ci left: 1.402999e-02	ci right 1.618684e-02	k: 754	n:50000
KS ci ratio: 4.009325e-02	ci left: 1.572725e-01	ci right 1.637270e-01	k: 8024	n:50000
ACVR1   50000 perm   12 sec   (4331 perm/sec)   p_kst 1.604800e-01   p_cons 1.508000e-02   p_joint 7.908000e-02

Joint ci ratio: 7.246713e-02	ci left: 4.481241e-02	ci right 4.819829e-02	k: 2789	n:60000
Cons ci ratio: 1.313210e-01	ci left: 1.367158e-02	ci right 1.560912e-02	k: 877	n:60000
KS ci ratio: 3.661585e-02	ci left: 1.574387e-01	ci right 1.633275e-01	k: 9622	n:60000
ACVR1   60000 perm   14 sec   (4259 perm/sec)   p_kst 1.603667e-01   p_cons 1.461667e-02   p_joint 4.648333e-02

Joint ci ratio: 6.733058e-02	ci left: 4.462852e-02	ci right 4.775210e-02	k: 3232	n:70000
Cons ci ratio: 1.212399e-01	ci left: 1.382147e-02	ci right 1.561908e-02	k: 1029	n:70000
KS ci ratio: 3.394624e-02	ci left: 1.572912e-01	ci right 1.627370e-01	k: 11200	n:70000
ACVR1   70000 perm   17 sec   (4185 perm/sec)   p_kst 1.600000e-01   p_cons 1.470000e-02   p_joint 4.617143e-02

Joint ci ratio: 5.099275e-02	ci left: 6.703075e-02	ci right 7.055060e-02	k: 5502	n:80000
Cons ci ratio: 1.123556e-01	ci left: 1.414477e-02	ci right 1.584067e-02	k: 1198	n:80000
KS ci ratio: 3.183549e-02	ci left: 1.567827e-01	ci right 1.618671e-01	k: 12745	n:80000
ACVR1   80000 perm   19 sec   (4104 perm/sec)   p_kst 1.593125e-01   p_cons 1.497500e-02   p_joint 6.877500e-02

Joint ci ratio: 4.744125e-02	ci left: 6.883588e-02	ci right 7.219186e-02	k: 6345	n:90000
Cons ci ratio: 1.063258e-01	ci left: 1.408613e-02	ci right 1.567869e-02	k: 1338	n:90000
KS ci ratio: 3.004752e-02	ci left: 1.566385e-01	ci right 1.614279e-01	k: 14312	n:90000
ACVR1   90000 perm   22 sec   (4004 perm/sec)   p_kst 1.590222e-01   p_cons 1.486667e-02   p_joint 7.050000e-02

Joint ci ratio: 4.550554e-02	ci left: 6.750588e-02	ci right 7.065917e-02	k: 6907	n:100000
Cons ci ratio: 1.007245e-01	ci left: 1.416795e-02	ci right 1.568038e-02	k: 1491	n:100000
KS ci ratio: 2.849210e-02	ci left: 1.568876e-01	ci right 1.614322e-01	k: 15915	n:100000
ACVR1   100000 perm   26 sec   (3915 perm/sec)   p_kst 1.591500e-01   p_cons 1.491000e-02   p_joint 6.907000e-02

Joint ci ratio: 4.353821e-02	ci left: 6.714008e-02	ci right 7.013726e-02	k: 7549	n:110000
Cons ci ratio: 9.560048e-02	ci left: 1.433433e-02	ci right 1.578231e-02	k: 1655	n:110000
KS ci ratio: 2.719258e-02	ci left: 1.567350e-01	ci right 1.610648e-01	k: 17478	n:110000
ACVR1   110000 perm   29 sec   (3845 perm/sec)   p_kst 1.588909e-01   p_cons 1.504545e-02   p_joint 6.862727e-02

Outputting figure to mutsig2_images.part000000000003/ACVR1.4_1566_110000_0.15889_0.015045_0.068627.png
                gene_name: ACVR1
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.070 

Current progress: 57 percent done.
ACVR2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.285498e-02	ci left: 7.376507e-01	ci right 7.548057e-01	k: 7463	n:10000
Cons ci ratio: 2.989677e-02	ci left: 6.226615e-01	ci right 6.416614e-01	k: 6322	n:10000
KS ci ratio: 3.818054e-02	ci left: 5.032509e-01	ci right 5.229414e-01	k: 5131	n:10000
ACVR2B   10000 perm   2 sec   (5383 perm/sec)   p_kst 5.131000e-01   p_cons 6.322000e-01   p_joint 7.463000e-01

Outputting figure to mutsig2_images.part000000000003/ACVR2B.4_1583_10000_0.5131_0.6322_0.7463.png
                gene_name: ACVR2B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 58 percent done.
ACVRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.358092e-01	ci left: 7.165494e-02	ci right 8.219310e-02	k: 768	n:10000
Cons ci ratio: 6.207343e-02	ci left: 2.761661e-01	ci right 2.939593e-01	k: 2850	n:10000
KS ci ratio: 3.498200e-01	ci left: 1.023265e-02	ci right 1.465817e-02	k: 123	n:10000
ACVRL1   10000 perm   2 sec   (5503 perm/sec)   p_kst 1.230000e-02   p_cons 2.850000e-01   p_joint 7.680000e-02

Joint ci ratio: 1.288181e-01	ci left: 4.139287e-02	ci right 4.714057e-02	k: 884	n:20000
Cons ci ratio: 4.266550e-02	ci left: 2.904238e-01	ci right 3.031354e-01	k: 5935	n:20000
KS ci ratio: 2.313597e-01	ci left: 1.251190e-02	ci right 1.583155e-02	k: 282	n:20000
ACVRL1   20000 perm   4 sec   (4910 perm/sec)   p_kst 1.410000e-02   p_cons 2.967500e-01   p_joint 4.420000e-02

Joint ci ratio: 1.412388e-01	ci left: 2.326276e-02	ci right 2.683003e-02	k: 750	n:30000
Cons ci ratio: 3.456832e-02	ci left: 2.948173e-01	ci right 3.052214e-01	k: 9000	n:30000
KS ci ratio: 1.937065e-01	ci left: 1.216125e-02	ci right 1.480087e-02	k: 403	n:30000
ACVRL1   30000 perm   6 sec   (4749 perm/sec)   p_kst 1.343333e-02   p_cons 3.000000e-01   p_joint 2.500000e-02

Joint ci ratio: 1.261376e-01	ci left: 2.208610e-02	ci right 2.508362e-02	k: 942	n:40000
Cons ci ratio: 2.998584e-02	ci left: 2.948392e-01	ci right 3.038399e-01	k: 11973	n:40000
KS ci ratio: 1.675454e-01	ci left: 1.236803e-02	ci right 1.465340e-02	k: 539	n:40000
ACVRL1   40000 perm   9 sec   (4529 perm/sec)   p_kst 1.347500e-02   p_cons 2.993250e-01   p_joint 2.355000e-02

Joint ci ratio: 1.218467e-01	ci left: 1.904299e-02	ci right 2.153314e-02	k: 1013	n:50000
Cons ci ratio: 2.680546e-02	ci left: 2.955467e-01	ci right 3.035966e-01	k: 14978	n:50000
KS ci ratio: 1.488548e-01	ci left: 1.266089e-02	ci right 1.471615e-02	k: 683	n:50000
ACVRL1   50000 perm   12 sec   (4255 perm/sec)   p_kst 1.366000e-02   p_cons 2.995600e-01   p_joint 2.026000e-02

Joint ci ratio: 1.016201e-01	ci left: 2.296888e-02	ci right 2.544410e-02	k: 1451	n:60000
Cons ci ratio: 2.458588e-02	ci left: 2.939266e-01	ci right 3.012597e-01	k: 17855	n:60000
KS ci ratio: 1.359526e-01	ci left: 1.273681e-02	ci right 1.461067e-02	k: 819	n:60000
ACVRL1   60000 perm   14 sec   (4150 perm/sec)   p_kst 1.365000e-02   p_cons 2.975833e-01   p_joint 2.418333e-02

Joint ci ratio: 7.632435e-02	ci left: 3.492655e-02	ci right 3.771205e-02	k: 2541	n:70000
Cons ci ratio: 2.330162e-02	ci left: 2.845333e-01	ci right 2.912558e-01	k: 20152	n:70000
KS ci ratio: 1.258456e-01	ci left: 1.281041e-02	ci right 1.454453e-02	k: 956	n:70000
ACVRL1   70000 perm   17 sec   (4006 perm/sec)   p_kst 1.365714e-02   p_cons 2.878857e-01   p_joint 3.630000e-02

Joint ci ratio: 7.705354e-02	ci left: 3.012869e-02	ci right 3.255546e-02	k: 2506	n:80000
Cons ci ratio: 2.182395e-02	ci left: 2.842406e-01	ci right 2.905248e-01	k: 22990	n:80000
KS ci ratio: 1.179759e-01	ci left: 1.280883e-02	ci right 1.442673e-02	k: 1088	n:80000
ACVRL1   80000 perm   20 sec   (3967 perm/sec)   p_kst 1.360000e-02   p_cons 2.873750e-01   p_joint 3.132500e-02

Joint ci ratio: 7.191790e-02	ci left: 3.080511e-02	ci right 3.311407e-02	k: 2875	n:90000
Cons ci ratio: 2.059586e-02	ci left: 2.840238e-01	ci right 2.899455e-01	k: 25828	n:90000
KS ci ratio: 1.112346e-01	ci left: 1.285345e-02	ci right 1.437813e-02	k: 1224	n:90000
ACVRL1   90000 perm   23 sec   (3922 perm/sec)   p_kst 1.360000e-02   p_cons 2.869778e-01   p_joint 3.194444e-02

Joint ci ratio: 6.844399e-02	ci left: 3.067189e-02	ci right 3.285538e-02	k: 3175	n:100000
Cons ci ratio: 1.954033e-02	ci left: 2.841476e-01	ci right 2.897647e-01	k: 28695	n:100000
KS ci ratio: 1.048688e-01	ci left: 1.305685e-02	ci right 1.451155e-02	k: 1377	n:100000
ACVRL1   100000 perm   26 sec   (3824 perm/sec)   p_kst 1.377000e-02   p_cons 2.869500e-01   p_joint 3.175000e-02

Joint ci ratio: 6.492939e-02	ci left: 3.103037e-02	ci right 3.312167e-02	k: 3527	n:110000
Cons ci ratio: 1.861840e-02	ci left: 2.845545e-01	ci right 2.899113e-01	k: 31595	n:110000
KS ci ratio: 9.974857e-02	ci left: 1.315436e-02	ci right 1.454417e-02	k: 1522	n:110000
ACVRL1   110000 perm   29 sec   (3741 perm/sec)   p_kst 1.383636e-02   p_cons 2.872273e-01   p_joint 3.206364e-02

Outputting figure to mutsig2_images.part000000000003/ACVRL1.4_1548_110000_0.013836_0.28723_0.032064.png
                gene_name: ACVRL1
               theta_stop: 0.100 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 59 percent done.
ADAM9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.381559e-03	ci left: 9.412847e-01	ci right 9.502533e-01	k: 9459	n:10000
Cons ci ratio: 1.804305e-02	ci left: 8.176118e-01	ci right 8.325984e-01	k: 8252	n:10000
KS ci ratio: 3.078365e-02	ci left: 6.088960e-01	ci right 6.280350e-01	k: 6185	n:10000
ADAM9   10000 perm   2 sec   (4508 perm/sec)   p_kst 6.185000e-01   p_cons 8.252000e-01   p_joint 9.459000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM9.4_2548_10000_0.6185_0.8252_0.9459.png
                gene_name: ADAM9
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 61 percent done.
ADAMDEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.119438e-02	ci left: 7.654710e-01	ci right 7.819693e-01	k: 7738	n:10000
Cons ci ratio: 2.137588e-02	ci left: 7.624337e-01	ci right 7.790083e-01	k: 7708	n:10000
KS ci ratio: 3.121569e-02	ci left: 6.022673e-01	ci right 6.214675e-01	k: 6119	n:10000
ADAMDEC1   10000 perm   2 sec   (5370 perm/sec)   p_kst 6.119000e-01   p_cons 7.708000e-01   p_joint 7.738000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMDEC1.4_1469_10000_0.6119_0.7708_0.7738.png
                gene_name: ADAMDEC1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 62 percent done.
ADAMTS10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.825135e-02	ci left: 1.926909e-01	ci right 2.084839e-01	k: 2005	n:10000
Cons ci ratio: 6.348859e-02	ci left: 2.671559e-01	ci right 2.847748e-01	k: 2759	n:10000
KS ci ratio: 1.012706e-01	ci left: 1.236626e-01	ci right 1.369535e-01	k: 1302	n:10000
ADAMTS10   10000 perm   3 sec   (3908 perm/sec)   p_kst 1.302000e-01   p_cons 2.759000e-01   p_joint 2.005000e-01

Joint ci ratio: 5.323230e-02	ci left: 2.075903e-01	ci right 2.189932e-01	k: 4265	n:20000
Cons ci ratio: 4.485419e-02	ci left: 2.701106e-01	ci right 2.825545e-01	k: 5526	n:20000
KS ci ratio: 7.031306e-02	ci left: 1.297506e-01	ci right 1.392560e-01	k: 2689	n:20000
ADAMTS10   20000 perm   6 sec   (3566 perm/sec)   p_kst 1.344500e-01   p_cons 2.763000e-01   p_joint 2.132500e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS10.4_3408_20000_0.13445_0.2763_0.21325.png
                gene_name: ADAMTS10
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 64 percent done.
ADAMTS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
Cons ci ratio: 1.515566e-02	ci left: 8.632507e-01	ci right 8.765330e-01	k: 8700	n:10000
KS ci ratio: 1.660239e-01	ci left: 4.840157e-02	ci right 5.726121e-02	k: 527	n:10000
ADAMTS4   10000 perm   2 sec   (5277 perm/sec)   p_kst 5.270000e-02   p_cons 8.700000e-01   p_joint 1.802000e-01

Joint ci ratio: 6.259287e-02	ci left: 1.587937e-01	ci right 1.691042e-01	k: 3278	n:20000
Cons ci ratio: 1.047765e-02	ci left: 8.703370e-01	ci right 8.795537e-01	k: 17500	n:20000
KS ci ratio: 1.172236e-01	ci left: 4.983805e-02	ci right 5.609272e-02	k: 1058	n:20000
ADAMTS4   20000 perm   4 sec   (4693 perm/sec)   p_kst 5.290000e-02   p_cons 8.750000e-01   p_joint 1.639000e-01

Joint ci ratio: 7.178945e-02	ci left: 8.714545e-02	ci right 9.366746e-02	k: 2711	n:30000
Cons ci ratio: 8.469767e-03	ci left: 8.733991e-01	ci right 8.808611e-01	k: 26315	n:30000
KS ci ratio: 9.759274e-02	ci left: 4.853745e-02	ci right 5.354995e-02	k: 1530	n:30000
ADAMTS4   30000 perm   7 sec   (4464 perm/sec)   p_kst 5.100000e-02   p_cons 8.771667e-01   p_joint 9.036667e-02

Outputting figure to mutsig2_images.part000000000003/ADAMTS4.4_2550_30000_0.051_0.87717_0.090367.png
                gene_name: ADAMTS4
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.094 

Current progress: 65 percent done.
ACSM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.015439e-02	ci left: 6.186415e-01	ci right 6.376837e-01	k: 6282	n:10000
Cons ci ratio: 1.684847e-02	ci left: 8.368400e-01	ci right 8.511590e-01	k: 8441	n:10000
KS ci ratio: 3.464415e-02	ci left: 5.516076e-01	ci right 5.711566e-01	k: 5614	n:10000
ACSM4   10000 perm   2 sec   (5002 perm/sec)   p_kst 5.614000e-01   p_cons 8.441000e-01   p_joint 6.282000e-01

Outputting figure to mutsig2_images.part000000000003/ACSM4.3_1795_10000_0.5614_0.8441_0.6282.png
                gene_name: ACSM4
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 66 percent done.
ACSS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.395331e-02	ci left: 3.360765e-01	ci right 3.548136e-01	k: 3454	n:10000
Cons ci ratio: 5.594406e-02	ci left: 3.199905e-01	ci right 3.385090e-01	k: 3292	n:10000
KS ci ratio: 5.599475e-02	ci left: 3.195935e-01	ci right 3.381063e-01	k: 3288	n:10000
ACSS1   10000 perm   2 sec   (5196 perm/sec)   p_kst 3.288000e-01   p_cons 3.292000e-01   p_joint 3.454000e-01

Outputting figure to mutsig2_images.part000000000003/ACSS1.3_2126_10000_0.3288_0.3292_0.3454.png
                gene_name: ACSS1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 68 percent done.
ACTA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.402527e-02	ci left: 2.108283e-01	ci right 2.271357e-01	k: 2189	n:10000
Cons ci ratio: 1.319350e-02	ci left: 8.922095e-01	ci right 9.041574e-01	k: 8983	n:10000
KS ci ratio: 8.400682e-02	ci left: 1.712357e-01	ci right 1.863519e-01	k: 1787	n:10000
ACTA2   10000 perm   2 sec   (5542 perm/sec)   p_kst 1.787000e-01   p_cons 8.983000e-01   p_joint 2.189000e-01

Outputting figure to mutsig2_images.part000000000003/ACTA2.3_1166_10000_0.1787_0.8983_0.2189.png
                gene_name: ACTA2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 69 percent done.
ACTG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.427486e-02	ci left: 7.139129e-01	ci right 7.315572e-01	k: 7228	n:10000
KS ci ratio: 2.138192e-02	ci left: 7.623325e-01	ci right 7.789096e-01	k: 7707	n:10000
ACTG2   10000 perm   2 sec   (5370 perm/sec)   p_kst 7.707000e-01   p_cons 7.228000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACTG2.3_1163_10000_0.7707_0.7228_1.png
                gene_name: ACTG2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
ACTL7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.715510e-03	ci left: 9.374458e-01	ci right 9.466946e-01	k: 9422	n:10000
KS ci ratio: 2.803301e-02	ci left: 6.522301e-01	ci right 6.708757e-01	k: 6616	n:10000
ACTL7A   10000 perm   2 sec   (5714 perm/sec)   p_kst 6.616000e-01   p_cons 9.422000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACTL7A.3_1312_10000_0.6616_0.9422_1.png
                gene_name: ACTL7A
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
ACTL8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.670574e-02	ci left: 4.035254e-01	ci right 4.229252e-01	k: 4132	n:10000
Cons ci ratio: 2.873724e-02	ci left: 6.409613e-01	ci right 6.597510e-01	k: 6504	n:10000
KS ci ratio: 6.762478e-02	ci left: 2.429207e-01	ci right 2.600243e-01	k: 2514	n:10000
ACTL8   10000 perm   2 sec   (5797 perm/sec)   p_kst 2.514000e-01   p_cons 6.504000e-01   p_joint 4.132000e-01

Outputting figure to mutsig2_images.part000000000003/ACTL8.3_1109_10000_0.2514_0.6504_0.4132.png
                gene_name: ACTL8
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 73 percent done.
ACTN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.143030e-02	ci left: 7.615226e-01	ci right 7.781199e-01	k: 7699	n:10000
Cons ci ratio: 5.176048e-02	ci left: 3.549581e-01	ci right 3.739210e-01	k: 3644	n:10000
KS ci ratio: 1.437565e-02	ci left: 8.750041e-01	ci right 8.877728e-01	k: 8815	n:10000
ACTN3   10000 perm   2 sec   (4767 perm/sec)   p_kst 8.815000e-01   p_cons 3.644000e-01   p_joint 7.699000e-01

Outputting figure to mutsig2_images.part000000000003/ACTN3.3_2790_10000_0.8815_0.3644_0.7699.png
                gene_name: ACTN3
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 74 percent done.
ACTN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.668779e-02	ci left: 5.231631e-01	ci right 5.428176e-01	k: 5330	n:10000
Cons ci ratio: 6.587477e-02	ci left: 2.528084e-01	ci right 2.701307e-01	k: 2614	n:10000
KS ci ratio: 3.987402e-02	ci left: 4.815553e-01	ci right 5.012497e-01	k: 4914	n:10000
ACTN4   10000 perm   2 sec   (5011 perm/sec)   p_kst 4.914000e-01   p_cons 2.614000e-01   p_joint 5.330000e-01

Outputting figure to mutsig2_images.part000000000003/ACTN4.3_2820_10000_0.4914_0.2614_0.533.png
                gene_name: ACTN4
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 76 percent done.
ACTR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.089368e-01	ci left: 3.043932e-02	ci right 3.763545e-02	k: 339	n:10000
Cons ci ratio: 8.472899e-02	ci left: 1.687778e-01	ci right 1.838112e-01	k: 1762	n:10000
KS ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
ACTR1B   10000 perm   2 sec   (6466 perm/sec)   p_kst 4.050000e-02   p_cons 1.762000e-01   p_joint 3.390000e-02

Joint ci ratio: 1.288181e-01	ci left: 4.139287e-02	ci right 4.714057e-02	k: 884	n:20000
Cons ci ratio: 5.753960e-02	ci left: 1.829024e-01	ci right 1.937884e-01	k: 3766	n:20000
KS ci ratio: 1.357013e-01	ci left: 3.732625e-02	ci right 4.280850e-02	k: 800	n:20000
ACTR1B   20000 perm   4 sec   (5599 perm/sec)   p_kst 4.000000e-02   p_cons 1.883000e-01   p_joint 4.420000e-02

Joint ci ratio: 1.072904e-01	ci left: 4.030997e-02	ci right 4.491247e-02	k: 1277	n:30000
Cons ci ratio: 4.717405e-02	ci left: 1.826677e-01	ci right 1.915263e-01	k: 5612	n:30000
KS ci ratio: 1.116012e-01	ci left: 3.729147e-02	ci right 4.173161e-02	k: 1184	n:30000
ACTR1B   30000 perm   6 sec   (5272 perm/sec)   p_kst 3.946667e-02   p_cons 1.870667e-01   p_joint 4.256667e-02

Joint ci ratio: 7.676481e-02	ci left: 5.884588e-02	ci right 6.356807e-02	k: 2447	n:40000
Cons ci ratio: 4.093816e-02	ci left: 1.826436e-01	ci right 1.903019e-01	k: 7458	n:40000
KS ci ratio: 9.608147e-02	ci left: 3.802732e-02	ci right 4.188983e-02	k: 1597	n:40000
ACTR1B   40000 perm   8 sec   (5062 perm/sec)   p_kst 3.992500e-02   p_cons 1.864500e-01   p_joint 6.117500e-02

Outputting figure to mutsig2_images.part000000000003/ACTR1B.3_1175_40000_0.039925_0.18645_0.061175.png
                gene_name: ACTR1B
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.064 

Current progress: 77 percent done.
ACTR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.070478e-02	ci left: 3.645043e-01	ci right 3.835691e-01	k: 3740	n:10000
Cons ci ratio: 5.879861e-02	ci left: 2.985619e-01	ci right 3.167503e-01	k: 3076	n:10000
KS ci ratio: 7.552859e-02	ci left: 2.041225e-01	ci right 2.202455e-01	k: 2121	n:10000
ACTR3   10000 perm   2 sec   (5601 perm/sec)   p_kst 2.121000e-01   p_cons 3.076000e-01   p_joint 3.740000e-01

Outputting figure to mutsig2_images.part000000000003/ACTR3.3_1305_10000_0.2121_0.3076_0.374.png
                gene_name: ACTR3
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 78 percent done.
ACTR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.543425e-02	ci left: 2.553802e-01	ci right 2.727574e-01	k: 2640	n:10000
Cons ci ratio: 9.901113e-02	ci left: 1.287509e-01	ci right 1.422622e-01	k: 1354	n:10000
KS ci ratio: 6.739209e-02	ci left: 2.442058e-01	ci right 2.613385e-01	k: 2527	n:10000
ACTR8   10000 perm   2 sec   (5654 perm/sec)   p_kst 2.527000e-01   p_cons 1.354000e-01   p_joint 2.640000e-01

Outputting figure to mutsig2_images.part000000000003/ACTR8.3_1927_10000_0.2527_0.1354_0.264.png
                gene_name: ACTR8
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 80 percent done.
ACTRT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.184266e-01	ci left: 2.778487e-02	ci right 3.469176e-02	k: 311	n:10000
Cons ci ratio: 1.835482e-02	ci left: 8.125304e-01	ci right 8.276826e-01	k: 8202	n:10000
KS ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
ACTRT1   10000 perm   2 sec   (6385 perm/sec)   p_kst 7.700000e-03   p_cons 8.202000e-01   p_joint 3.110000e-02

Joint ci ratio: 1.558784e-01	ci left: 2.825647e-02	ci right 3.308125e-02	k: 612	n:20000
Cons ci ratio: 1.343597e-02	ci left: 8.042405e-01	ci right 8.151693e-01	k: 16195	n:20000
KS ci ratio: 3.146564e-01	ci left: 6.489480e-03	ci right 8.956878e-03	k: 153	n:20000
ACTRT1   20000 perm   4 sec   (5611 perm/sec)   p_kst 7.650000e-03   p_cons 8.097500e-01   p_joint 3.060000e-02

Joint ci ratio: 1.155680e-01	ci left: 3.479506e-02	ci right 3.909522e-02	k: 1107	n:30000
Cons ci ratio: 1.103851e-02	ci left: 8.033285e-01	ci right 8.122785e-01	k: 24235	n:30000
KS ci ratio: 2.633112e-01	ci left: 6.367997e-03	ci right 8.329228e-03	k: 219	n:30000
ACTRT1   30000 perm   6 sec   (5324 perm/sec)   p_kst 7.300000e-03   p_cons 8.078333e-01   p_joint 3.690000e-02

Joint ci ratio: 9.868338e-02	ci left: 3.607420e-02	ci right 3.984326e-02	k: 1517	n:40000
Cons ci ratio: 9.534444e-03	ci left: 8.047603e-01	ci right 8.124949e-01	k: 32346	n:40000
KS ci ratio: 2.224984e-01	ci left: 6.843160e-03	ci right 8.579455e-03	k: 307	n:40000
ACTRT1   40000 perm   8 sec   (5087 perm/sec)   p_kst 7.675000e-03   p_cons 8.086500e-01   p_joint 3.792500e-02

Joint ci ratio: 9.014616e-02	ci left: 3.479495e-02	ci right 3.809915e-02	k: 1821	n:50000
Cons ci ratio: 8.536386e-03	ci left: 8.048621e-01	ci right 8.117821e-01	k: 40417	n:50000
KS ci ratio: 2.055676e-01	ci left: 6.477653e-03	ci right 7.980412e-03	k: 360	n:50000
ACTRT1   50000 perm   10 sec   (4941 perm/sec)   p_kst 7.200000e-03   p_cons 8.083400e-01   p_joint 3.642000e-02

Joint ci ratio: 7.742989e-02	ci left: 3.937821e-02	ci right 4.256639e-02	k: 2457	n:60000
Cons ci ratio: 7.517873e-03	ci left: 8.161136e-01	ci right 8.222888e-01	k: 49153	n:60000
KS ci ratio: 1.883590e-01	ci left: 6.491426e-03	ci right 7.856896e-03	k: 429	n:60000
ACTRT1   60000 perm   12 sec   (4813 perm/sec)   p_kst 7.150000e-03   p_cons 8.192167e-01   p_joint 4.095000e-02

Joint ci ratio: 7.536057e-02	ci left: 3.581010e-02	ci right 3.862843e-02	k: 2604	n:70000
Cons ci ratio: 6.978027e-03	ci left: 8.155813e-01	ci right 8.213066e-01	k: 57292	n:70000
KS ci ratio: 1.729458e-01	ci left: 6.655382e-03	ci right 7.928830e-03	k: 509	n:70000
ACTRT1   70000 perm   15 sec   (4693 perm/sec)   p_kst 7.271429e-03   p_cons 8.184571e-01   p_joint 3.720000e-02

Joint ci ratio: 7.557245e-02	ci left: 3.130650e-02	ci right 3.377755e-02	k: 2602	n:80000
Cons ci ratio: 6.545060e-03	ci left: 8.149565e-01	ci right 8.203204e-01	k: 65412	n:80000
KS ci ratio: 1.609241e-01	ci left: 6.769776e-03	ci right 7.966367e-03	k: 588	n:80000
ACTRT1   80000 perm   17 sec   (4587 perm/sec)   p_kst 7.350000e-03   p_cons 8.176500e-01   p_joint 3.252500e-02

Joint ci ratio: 8.184370e-02	ci left: 2.383732e-02	ci right 2.588235e-02	k: 2236	n:90000
Cons ci ratio: 6.165333e-03	ci left: 8.153740e-01	ci right 8.204277e-01	k: 73612	n:90000
KS ci ratio: 1.546424e-01	ci left: 6.540469e-03	ci right 7.647214e-03	k: 637	n:90000
ACTRT1   90000 perm   20 sec   (4495 perm/sec)   p_kst 7.077778e-03   p_cons 8.179111e-01   p_joint 2.484444e-02

Joint ci ratio: 6.752713e-02	ci left: 3.149806e-02	ci right 3.370916e-02	k: 3259	n:100000
Cons ci ratio: 5.848181e-03	ci left: 8.155441e-01	ci right 8.203375e-01	k: 81795	n:100000
KS ci ratio: 1.461769e-01	ci left: 6.617854e-03	ci right 7.671037e-03	k: 713	n:100000
ACTRT1   100000 perm   23 sec   (4404 perm/sec)   p_kst 7.130000e-03   p_cons 8.179500e-01   p_joint 3.259000e-02

Joint ci ratio: 6.366328e-02	ci left: 3.225645e-02	ci right 3.438643e-02	k: 3664	n:110000
Cons ci ratio: 5.574061e-03	ci left: 8.157617e-01	ci right 8.203306e-01	k: 89986	n:110000
KS ci ratio: 1.399497e-01	ci left: 6.585987e-03	ci right 7.585722e-03	k: 778	n:110000
ACTRT1   110000 perm   26 sec   (4273 perm/sec)   p_kst 7.072727e-03   p_cons 8.180545e-01   p_joint 3.330909e-02

Joint ci ratio: 6.324910e-02	ci left: 3.003477e-02	ci right 3.200465e-02	k: 3721	n:120000
Cons ci ratio: 5.331308e-03	ci left: 8.161651e-01	ci right 8.205362e-01	k: 98203	n:120000
KS ci ratio: 1.247711e-01	ci left: 7.649050e-03	ci right 8.674932e-03	k: 978	n:120000
ACTRT1   120000 perm   29 sec   (4190 perm/sec)   p_kst 8.150000e-03   p_cons 8.183583e-01   p_joint 3.100833e-02

Joint ci ratio: 6.056784e-02	ci left: 3.026912e-02	ci right 3.216725e-02	k: 4057	n:130000
Cons ci ratio: 5.128060e-03	ci left: 8.159071e-01	ci right 8.201095e-01	k: 106342	n:130000
KS ci ratio: 1.186741e-01	ci left: 7.828897e-03	ci right 8.823991e-03	k: 1081	n:130000
ACTRT1   130000 perm   32 sec   (4105 perm/sec)   p_kst 8.315385e-03   p_cons 8.180154e-01   p_joint 3.120769e-02

Joint ci ratio: 5.919577e-02	ci left: 2.947164e-02	ci right 3.127645e-02	k: 4251	n:140000
Cons ci ratio: 4.937152e-03	ci left: 8.162485e-01	ci right 8.202955e-01	k: 114559	n:140000
KS ci ratio: 1.150175e-01	ci left: 7.755060e-03	ci right 8.708333e-03	k: 1151	n:140000
ACTRT1   140000 perm   35 sec   (4028 perm/sec)   p_kst 8.221429e-03   p_cons 8.182786e-01   p_joint 3.036429e-02

Joint ci ratio: 5.903644e-02	ci left: 2.770972e-02	ci right 2.940190e-02	k: 4282	n:150000
Cons ci ratio: 4.766082e-03	ci left: 8.165467e-01	ci right 8.204543e-01	k: 122776	n:150000
KS ci ratio: 1.122363e-01	ci left: 7.613702e-03	ci right 8.525467e-03	k: 1209	n:150000
ACTRT1   150000 perm   38 sec   (3956 perm/sec)   p_kst 8.060000e-03   p_cons 8.185067e-01   p_joint 2.854667e-02

Joint ci ratio: 5.432327e-02	ci left: 3.066187e-02	ci right 3.238016e-02	k: 5042	n:160000
Cons ci ratio: 4.612317e-03	ci left: 8.167657e-01	ci right 8.205478e-01	k: 130986	n:160000
KS ci ratio: 1.083203e-01	ci left: 7.678768e-03	ci right 8.564195e-03	k: 1298	n:160000
ACTRT1   160000 perm   41 sec   (3888 perm/sec)   p_kst 8.112500e-03   p_cons 8.186625e-01   p_joint 3.151250e-02

Joint ci ratio: 5.607694e-02	ci left: 2.715708e-02	ci right 2.872967e-02	k: 4749	n:170000
Cons ci ratio: 4.476787e-03	ci left: 8.166772e-01	ci right 8.203473e-01	k: 139148	n:170000
KS ci ratio: 1.051318e-01	ci left: 7.685104e-03	ci right 8.543563e-03	k: 1378	n:170000
ACTRT1   170000 perm   44 sec   (3823 perm/sec)   p_kst 8.105882e-03   p_cons 8.185176e-01   p_joint 2.793529e-02

Joint ci ratio: 5.560090e-02	ci left: 2.612454e-02	ci right 2.762408e-02	k: 4836	n:180000
Cons ci ratio: 4.355142e-03	ci left: 8.164215e-01	ci right 8.199904e-01	k: 147278	n:180000
KS ci ratio: 1.024573e-01	ci left: 7.653175e-03	ci right 8.485008e-03	k: 1451	n:180000
ACTRT1   180000 perm   48 sec   (3759 perm/sec)   p_kst 8.061111e-03   p_cons 8.182111e-01   p_joint 2.686667e-02

Joint ci ratio: 5.936792e-02	ci left: 2.176521e-02	ci right 2.310205e-02	k: 4261	n:190000
Cons ci ratio: 4.237717e-03	ci left: 8.165587e-01	ci right 8.200316e-01	k: 155477	n:190000
KS ci ratio: 1.011880e-01	ci left: 7.440112e-03	ci right 8.238172e-03	k: 1488	n:190000
ACTRT1   190000 perm   51 sec   (3695 perm/sec)   p_kst 7.831579e-03   p_cons 8.183000e-01   p_joint 2.242632e-02

Joint ci ratio: 5.196038e-02	ci left: 2.695055e-02	ci right 2.839318e-02	k: 5533	n:200000
Cons ci ratio: 4.130831e-03	ci left: 8.165729e-01	ci right 8.199579e-01	k: 163654	n:200000
KS ci ratio: 9.825909e-02	ci left: 7.506896e-03	ci right 8.287469e-03	k: 1578	n:200000
ACTRT1   200000 perm   55 sec   (3625 perm/sec)   p_kst 7.890000e-03   p_cons 8.182700e-01   p_joint 2.766500e-02

Outputting figure to mutsig2_images.part000000000003/ACTRT1.3_1135_200000_0.00789_0.81827_0.027665.png
                gene_name: ACTRT1
               theta_stop: 0.098 
                    nperm: 200000 
                     p_ks: 0.0079 
        ci_ks_bounds_left: 0.0075 
       ci_ks_bounds_right: 0.0083 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.028 

Current progress: 81 percent done.
ACVR1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.589924e-01	ci left: 5.272798e-02	ci right 6.193202e-02	k: 572	n:10000
Cons ci ratio: 1.007820e-01	ci left: 1.247387e-01	ci right 1.380768e-01	k: 1313	n:10000
KS ci ratio: 1.665240e-01	ci left: 4.811345e-02	ci right 5.694952e-02	k: 524	n:10000
ACVR1C   10000 perm   2 sec   (4291 perm/sec)   p_kst 5.240000e-02   p_cons 1.313000e-01   p_joint 5.720000e-02

Joint ci ratio: 1.057364e-01	ci left: 6.089032e-02	ci right 6.773701e-02	k: 1285	n:20000
Cons ci ratio: 7.161038e-02	ci left: 1.256143e-01	ci right 1.349934e-01	k: 2605	n:20000
KS ci ratio: 1.158440e-01	ci left: 5.100488e-02	ci right 5.732553e-02	k: 1082	n:20000
ACVR1C   20000 perm   4 sec   (4493 perm/sec)   p_kst 5.410000e-02   p_cons 1.302500e-01   p_joint 6.425000e-02

Joint ci ratio: 7.664414e-02	ci left: 7.711793e-02	ci right 8.329699e-02	k: 2405	n:30000
Cons ci ratio: 5.692268e-02	ci left: 1.326008e-01	ci right 1.404031e-01	k: 4094	n:30000
KS ci ratio: 9.348168e-02	ci left: 5.277268e-02	ci right 5.798051e-02	k: 1660	n:30000
ACVR1C   30000 perm   7 sec   (4501 perm/sec)   p_kst 5.533333e-02   p_cons 1.364667e-01   p_joint 8.016667e-02

Outputting figure to mutsig2_images.part000000000003/ACVR1C.3_1518_30000_0.055333_0.13647_0.080167.png
                gene_name: ACVR1C
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.083 

Current progress: 82 percent done.
ADA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.473567e-02	ci left: 5.503049e-01	ci right 5.698601e-01	k: 5601	n:10000
Cons ci ratio: 2.630407e-02	ci left: 6.803271e-01	ci right 6.985625e-01	k: 6895	n:10000
KS ci ratio: 7.921578e-02	ci left: 1.888498e-01	ci right 2.045273e-01	k: 1966	n:10000
ADA   10000 perm   2 sec   (6398 perm/sec)   p_kst 1.966000e-01   p_cons 6.895000e-01   p_joint 5.601000e-01

Outputting figure to mutsig2_images.part000000000003/ADA.3_1140_10000_0.1966_0.6895_0.5601.png
                gene_name: ADA
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 84 percent done.
ADAM19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.430771e-02	ci left: 2.095461e-01	ci right 2.258187e-01	k: 2176	n:10000
Cons ci ratio: 1.528606e-01	ci left: 5.696592e-02	ci right 6.649137e-02	k: 616	n:10000
KS ci ratio: 2.974911e-02	ci left: 6.249733e-01	ci right 6.439483e-01	k: 6345	n:10000
ADAM19   10000 perm   2 sec   (4892 perm/sec)   p_kst 6.345000e-01   p_cons 6.160000e-02   p_joint 2.176000e-01

Joint ci ratio: 5.715669e-02	ci left: 1.849296e-01	ci right 1.958606e-01	k: 3807	n:20000
Cons ci ratio: 1.121161e-01	ci left: 5.436186e-02	ci right 6.086750e-02	k: 1151	n:20000
KS ci ratio: 2.112756e-02	ci left: 6.257743e-01	ci right 6.391871e-01	k: 12650	n:20000
ADAM19   20000 perm   5 sec   (4267 perm/sec)   p_kst 6.325000e-01   p_cons 5.755000e-02   p_joint 1.903500e-01

Joint ci ratio: 4.302011e-02	ci left: 2.120819e-01	ci right 2.214397e-01	k: 6502	n:30000
Cons ci ratio: 8.858866e-02	ci left: 5.854619e-02	ci right 6.400582e-02	k: 1837	n:30000
KS ci ratio: 1.720264e-02	ci left: 6.283190e-01	ci right 6.392551e-01	k: 19014	n:30000
ADAM19   30000 perm   7 sec   (4019 perm/sec)   p_kst 6.338000e-01   p_cons 6.123333e-02   p_joint 2.167333e-01

Outputting figure to mutsig2_images.part000000000003/ADAM19.3_2849_30000_0.6338_0.061233_0.21673.png
                gene_name: ADAM19
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 85 percent done.
ADAM33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.886859e-02	ci left: 2.362004e-01	ci right 2.531486e-01	k: 2446	n:10000
Cons ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
KS ci ratio: 5.764585e-02	ci left: 3.069917e-01	ci right 3.253155e-01	k: 3161	n:10000
ADAM33   10000 perm   2 sec   (5371 perm/sec)   p_kst 3.161000e-01   p_cons 1.651000e-01   p_joint 2.446000e-01

Outputting figure to mutsig2_images.part000000000003/ADAM33.3_2530_10000_0.3161_0.1651_0.2446.png
                gene_name: ADAM33
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 86 percent done.
ADAMTS13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.692423e-02	ci left: 5.199601e-01	ci right 5.396225e-01	k: 5298	n:10000
Cons ci ratio: 3.595726e-02	ci left: 5.331752e-01	ci right 5.527998e-01	k: 5430	n:10000
KS ci ratio: 6.052633e-02	ci left: 2.864688e-01	ci right 3.044505e-01	k: 2954	n:10000
ADAMTS13   10000 perm   3 sec   (3738 perm/sec)   p_kst 2.954000e-01   p_cons 5.430000e-01   p_joint 5.298000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS13.3_4400_10000_0.2954_0.543_0.5298.png
                gene_name: ADAMTS13
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 88 percent done.
ADAMTS15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.751436e-02	ci left: 3.952579e-01	ci right 4.145975e-01	k: 4049	n:10000
Cons ci ratio: 2.671637e-02	ci left: 6.735763e-01	ci right 6.919171e-01	k: 6828	n:10000
KS ci ratio: 8.440949e-02	ci left: 1.698592e-01	ci right 1.849292e-01	k: 1773	n:10000
ADAMTS15   10000 perm   2 sec   (4636 perm/sec)   p_kst 1.773000e-01   p_cons 6.828000e-01   p_joint 4.049000e-01

Outputting figure to mutsig2_images.part000000000003/ADAMTS15.3_2885_10000_0.1773_0.6828_0.4049.png
                gene_name: ADAMTS15
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 89 percent done.
ACSM2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.558940e-02	ci left: 5.382828e-01	ci right 5.578892e-01	k: 5481	n:10000
KS ci ratio: 6.108332e-02	ci left: 2.827037e-01	ci right 3.006178e-01	k: 2916	n:10000
ACSM2A   10000 perm   2 sec   (6152 perm/sec)   p_kst 2.916000e-01   p_cons 5.481000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACSM2A.2_1786_10000_0.2916_0.5481_1.png
                gene_name: ACSM2A
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
ACSM2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.703552e-02	ci left: 5.184588e-01	ci right 5.381247e-01	k: 5283	n:10000
KS ci ratio: 5.614730e-02	ci left: 3.184024e-01	ci right 3.368981e-01	k: 3276	n:10000
ACSM2B   10000 perm   2 sec   (6375 perm/sec)   p_kst 3.276000e-01   p_cons 5.283000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000003/ACSM2B.2_1786_10000_0.3276_0.5283_1.png
                gene_name: ACSM2B
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
ACTB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.395987e-02	ci left: 8.811437e-01	ci right 8.936296e-01	k: 8875	n:10000
Cons ci ratio: 3.853352e-02	ci left: 4.986503e-01	ci right 5.183447e-01	k: 5085	n:10000
KS ci ratio: 1.615832e-02	ci left: 8.477417e-01	ci right 8.616509e-01	k: 8548	n:10000
ACTB   10000 perm   2 sec   (6495 perm/sec)   p_kst 8.548000e-01   p_cons 5.085000e-01   p_joint 8.875000e-01

Outputting figure to mutsig2_images.part000000000003/ACTB.2_1148_10000_0.8548_0.5085_0.8875.png
                gene_name: ACTB
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 93 percent done.
ACTR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.105432e-02	ci left: 9.211069e-01	ci right 9.314431e-01	k: 9264	n:10000
Cons ci ratio: 1.386189e-02	ci left: 8.825771e-01	ci right 8.949954e-01	k: 8889	n:10000
KS ci ratio: 4.684082e-02	ci left: 4.021307e-01	ci right 4.215207e-01	k: 4118	n:10000
ACTR1A   10000 perm   2 sec   (5526 perm/sec)   p_kst 4.118000e-01   p_cons 8.889000e-01   p_joint 9.264000e-01

Outputting figure to mutsig2_images.part000000000003/ACTR1A.2_1175_10000_0.4118_0.8889_0.9264.png
                gene_name: ACTR1A
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 95 percent done.
ACTR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.022950e-02	ci left: 7.815789e-01	ci right 7.976520e-01	k: 7897	n:10000
Cons ci ratio: 3.464415e-02	ci left: 5.516076e-01	ci right 5.711566e-01	k: 5614	n:10000
KS ci ratio: 3.704295e-02	ci left: 5.183588e-01	ci right 5.380248e-01	k: 5282	n:10000
ACTR2   10000 perm   2 sec   (6560 perm/sec)   p_kst 5.282000e-01   p_cons 5.614000e-01   p_joint 7.897000e-01

Outputting figure to mutsig2_images.part000000000003/ACTR2.2_1240_10000_0.5282_0.5614_0.7897.png
                gene_name: ACTR2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 96 percent done.
ACTR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.111089e-02	ci left: 9.203848e-01	ci right 9.307656e-01	k: 9257	n:10000
Cons ci ratio: 1.202125e-02	ci left: 9.084365e-01	ci right 9.195210e-01	k: 9141	n:10000
KS ci ratio: 2.384527e-02	ci left: 7.210814e-01	ci right 7.385845e-01	k: 7299	n:10000
ACTR5   10000 perm   2 sec   (5735 perm/sec)   p_kst 7.299000e-01   p_cons 9.141000e-01   p_joint 9.257000e-01

Outputting figure to mutsig2_images.part000000000003/ACTR5.2_1860_10000_0.7299_0.9141_0.9257.png
                gene_name: ACTR5
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 97 percent done.
ACY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.112967e-02	ci left: 3.606257e-01	ci right 3.796501e-01	k: 3701	n:10000
Cons ci ratio: 6.933755e-02	ci left: 2.337305e-01	ci right 2.506200e-01	k: 2421	n:10000
KS ci ratio: 8.369350e-02	ci left: 1.723174e-01	ci right 1.874696e-01	k: 1798	n:10000
ACY1   10000 perm   2 sec   (6039 perm/sec)   p_kst 1.798000e-01   p_cons 2.421000e-01   p_joint 3.701000e-01

Outputting figure to mutsig2_images.part000000000003/ACY1.2_1283_10000_0.1798_0.2421_0.3701.png
                gene_name: ACY1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 99 percent done.
ACYP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.751475e-02	ci left: 1.597376e-01	ci right 1.744569e-01	k: 1670	n:10000
Cons ci ratio: 2.156329e-02	ci left: 7.592958e-01	ci right 7.759480e-01	k: 7677	n:10000
KS ci ratio: 9.695188e-02	ci left: 1.336465e-01	ci right 1.473637e-01	k: 1404	n:10000
ACYP1   10000 perm   2 sec   (6464 perm/sec)   p_kst 1.404000e-01   p_cons 7.677000e-01   p_joint 1.670000e-01

Outputting figure to mutsig2_images.part000000000003/ACYP1.2_391_10000_0.1404_0.7677_0.167.png
                gene_name: ACYP1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000003
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 3 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1707>
Subject: Job 9893798: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1707>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000004> was used as the working directory.
Started at Fri Oct  5 23:51:14 2012
Results reported at Sat Oct  6 00:09:00 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000004.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000004.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 4  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000004.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1099.89 sec.
    Max Memory :      3627 MB
    Max Swap   :      5948 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
4
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 4
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 4: processing genes 271 - 361
Calculating significance of each gene.
Using projection method.
271	ADAMTS8	4.835486e-01
272	ADAMTS9	2.622821e-01
273	ADAMTSL1	3.492299e-01
274	ADAMTSL2	6.706675e-01
275	ADAMTSL3	1.940799e-02
276	ADAMTSL4	9.631350e-01
277	ADAMTSL5	8.554370e-01
278	ADAP1	1
279	ADAP2	7.927722e-01
280	ADAR	1.206106e-01
281	ADARB1	9.705399e-01
282	ADARB2	9.442382e-01
283	ADAT1	5.474203e-01
284	ADAT2	1.229590e-01
285	ADAT3	1
286	ADC	8.350376e-01
287	ADCK1	1.667180e-01
288	ADCK2	8.534660e-01
289	ADCK4	5.169048e-01
290	ADCK5	1
291	ADCY1	7.264549e-02
292	ADCY10	9.684770e-01
293	ADCY2	4.997713e-04
294	ADCY3	9.669491e-01
295	ADCY4	3.996190e-01
296	ADCY5	2.206117e-01
297	ADCY6	9.987698e-01
298	ADCY7	9.069121e-01
299	ADCY8	2.122931e-02
300	ADCY9	8.926678e-01
301	ADCYAP1	2.137746e-01
302	ADCYAP1R1	4.477522e-01
303	ADD1	6.985792e-01
304	ADD2	2.097310e-01
305	ADD3	5.946838e-01
306	ADH1A	4.886800e-01
307	ADH1B	1.628262e-01
308	ADH1C	9.897565e-02
309	ADH4	4.523009e-01
310	ADH5	5.421335e-01
311	ADH6	5.609745e-02
312	ADH7	4.881639e-01
313	ADHFE1	9.362558e-03
314	ADI1	2.649828e-01
315	ADIG	1
316	ADIPOQ	1.474273e-02
317	ADIPOR1	7.051234e-01
318	ADIPOR2	2.775673e-01
319	ADK	6.996196e-01
320	ADM	1.981314e-01
321	ADM2	1
322	ADNP	6.458060e-02
323	ADNP2	4.164566e-01
324	ADO	1
325	ADORA1	1.143294e-02
326	ADORA2A	3.734648e-01
327	ADORA2B	4.987408e-01
328	ADORA3	2.046116e-01
329	ADPGK	1
330	ADPRH	1
331	ADPRHL1	1
332	ADPRHL2	7.378414e-01
333	ADRA1A	1.811057e-01
334	ADRA1B	8.868625e-02
335	ADRA1D	6.495309e-01
336	ADRA2A	2.047279e-01
337	ADRA2B	7.571430e-01
338	ADRA2C	1
339	ADRB1	2.611033e-01
340	ADRB2	1
341	ADRB3	5.534007e-01
342	ADRBK1	8.832531e-01
343	ADRBK2	7.555521e-01
344	ADRM1	1
345	ADSL	3.516271e-02
346	ADSS	6.902934e-01
347	ADSSL1	1
348	AEBP1	7.531961e-01
349	AEBP2	1
350	AEN	1
351	AES	1
352	AFAP1	2.616774e-01
353	AFAP1L1	6.800506e-01
354	AFAP1L2	7.244990e-01
355	AFF1	6.708686e-01
356	AFF2	1.212697e-05
357	AFF3	3.079795e-02
358	AFF4	7.695771e-01
359	AFG3L2	8.971704e-01
360	AFM	1.085490e-01
361	AFMID	7.515959e-01
Done

Running MutSig 2:
Scatter job 4: processing genes 271 - 361
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
AFF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.435169e-02	ci left: 1.700559e-01	ci right 1.851324e-01	k: 1775	n:10000
Cons ci ratio: 5.806165e-02	ci left: 3.039169e-01	ci right 3.221921e-01	k: 3130	n:10000
KS ci ratio: 1.041866e-01	ci left: 1.175028e-01	ci right 1.305171e-01	k: 1239	n:10000
AFF2   10000 perm   2 sec   (4282 perm/sec)   p_kst 1.239000e-01   p_cons 3.130000e-01   p_joint 1.775000e-01

Joint ci ratio: 7.538251e-02	ci left: 1.145924e-01	ci right 1.236187e-01	k: 2381	n:20000
Cons ci ratio: 3.990122e-02	ci left: 3.189572e-01	ci right 3.319936e-01	k: 6509	n:20000
KS ci ratio: 7.428916e-02	ci left: 1.176419e-01	ci right 1.267683e-01	k: 2443	n:20000
AFF2   20000 perm   8 sec   (2537 perm/sec)   p_kst 1.221500e-01   p_cons 3.254500e-01   p_joint 1.190500e-01

Outputting figure to mutsig2_images.part000000000004/AFF2.19_4075_20000_0.12215_0.32545_0.11905.png
                gene_name: AFF2
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 2 percent done.
ADCY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.096528e-02	ci left: 2.834963e-01	ci right 3.014247e-01	k: 2924	n:10000
Cons ci ratio: 5.183877e-02	ci left: 3.542622e-01	ci right 3.732173e-01	k: 3637	n:10000
KS ci ratio: 7.582348e-02	ci left: 2.028409e-01	ci right 2.189279e-01	k: 2108	n:10000
ADCY2   10000 perm   2 sec   (4398 perm/sec)   p_kst 2.108000e-01   p_cons 3.637000e-01   p_joint 2.924000e-01

Outputting figure to mutsig2_images.part000000000004/ADCY2.15_3376_10000_0.2108_0.3637_0.2924.png
                gene_name: ADCY2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 3 percent done.
ADAMTS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.639045e-01	ci left: 4.965055e-02	ci right 5.861142e-02	k: 540	n:10000
Cons ci ratio: 6.677346e-02	ci left: 2.476661e-01	ci right 2.648761e-01	k: 2562	n:10000
KS ci ratio: 2.331010e-01	ci left: 2.428868e-02	ci right 3.079048e-02	k: 274	n:10000
ADAMTS9   10000 perm   3 sec   (4000 perm/sec)   p_kst 2.740000e-02   p_cons 2.562000e-01   p_joint 5.400000e-02

Joint ci ratio: 1.588432e-01	ci left: 2.719860e-02	ci right 3.193948e-02	k: 590	n:20000
Cons ci ratio: 4.714831e-02	ci left: 2.507561e-01	ci right 2.629146e-01	k: 5136	n:20000
KS ci ratio: 1.723925e-01	ci left: 2.302419e-02	ci right 2.741533e-02	k: 503	n:20000
ADAMTS9   20000 perm   6 sec   (3632 perm/sec)   p_kst 2.515000e-02   p_cons 2.568000e-01   p_joint 2.950000e-02

Joint ci ratio: 1.372601e-01	ci left: 2.464735e-02	ci right 2.831180e-02	k: 793	n:30000
Cons ci ratio: 3.840432e-02	ci left: 2.527909e-01	ci right 2.627227e-01	k: 7732	n:30000
KS ci ratio: 1.419187e-01	ci left: 2.303750e-02	ci right 2.658867e-02	k: 743	n:30000
ADAMTS9   30000 perm   9 sec   (3509 perm/sec)   p_kst 2.476667e-02   p_cons 2.577333e-01   p_joint 2.643333e-02

Joint ci ratio: 1.160673e-01	ci left: 2.611359e-02	ci right 2.935546e-02	k: 1108	n:40000
Cons ci ratio: 3.342219e-02	ci left: 2.516042e-01	ci right 2.601813e-01	k: 10235	n:40000
KS ci ratio: 1.300767e-01	ci left: 2.075422e-02	ci right 2.366572e-02	k: 887	n:40000
ADAMTS9   40000 perm   12 sec   (3408 perm/sec)   p_kst 2.217500e-02   p_cons 2.558750e-01   p_joint 2.770000e-02

Joint ci ratio: 9.492693e-02	ci left: 3.141229e-02	ci right 3.456224e-02	k: 1648	n:50000
Cons ci ratio: 2.972824e-02	ci left: 2.541691e-01	ci right 2.618591e-01	k: 12900	n:50000
KS ci ratio: 1.148197e-01	ci left: 2.147054e-02	ci right 2.410527e-02	k: 1138	n:50000
ADAMTS9   50000 perm   15 sec   (3336 perm/sec)   p_kst 2.276000e-02   p_cons 2.580000e-01   p_joint 3.296000e-02

Joint ci ratio: 8.785234e-02	ci left: 3.070394e-02	ci right 3.354155e-02	k: 1926	n:60000
Cons ci ratio: 2.707700e-02	ci left: 2.553653e-01	ci right 2.623914e-01	k: 15532	n:60000
KS ci ratio: 1.049257e-01	ci left: 2.153924e-02	ci right 2.394056e-02	k: 1363	n:60000
ADAMTS9   60000 perm   18 sec   (3290 perm/sec)   p_kst 2.271667e-02   p_cons 2.588667e-01   p_joint 3.210000e-02

Joint ci ratio: 8.065541e-02	ci left: 3.132471e-02	ci right 3.397136e-02	k: 2284	n:70000
Cons ci ratio: 2.513754e-02	ci left: 2.545768e-01	ci right 2.610719e-01	k: 18047	n:70000
KS ci ratio: 9.724672e-02	ci left: 2.158140e-02	ci right 2.380127e-02	k: 1587	n:70000
ADAMTS9   70000 perm   22 sec   (3245 perm/sec)   p_kst 2.267143e-02   p_cons 2.578143e-01   p_joint 3.262857e-02

Outputting figure to mutsig2_images.part000000000004/ADAMTS9.14_5964_70000_0.022671_0.25781_0.032629.png
                gene_name: ADAMTS9
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 5 percent done.
ADAMTSL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.619910e-02	ci left: 4.088062e-01	ci right 4.282413e-01	k: 4185	n:10000
Cons ci ratio: 6.463583e-02	ci left: 2.601291e-01	ci right 2.776057e-01	k: 2688	n:10000
KS ci ratio: 4.772199e-02	ci left: 3.931666e-01	ci right 4.124900e-01	k: 4028	n:10000
ADAMTSL3   10000 perm   3 sec   (3918 perm/sec)   p_kst 4.028000e-01   p_cons 2.688000e-01   p_joint 4.185000e-01

Outputting figure to mutsig2_images.part000000000004/ADAMTSL3.14_5192_10000_0.4028_0.2688_0.4185.png
                gene_name: ADAMTSL3
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 7 percent done.
AFF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.403624e-02	ci left: 5.603277e-01	ci right 5.798314e-01	k: 5701	n:10000
Cons ci ratio: 5.989282e-02	ci left: 2.908294e-01	ci right 3.088873e-01	k: 2998	n:10000
KS ci ratio: 3.038716e-02	ci left: 6.150242e-01	ci right 6.341032e-01	k: 6246	n:10000
AFF3   10000 perm   2 sec   (4211 perm/sec)   p_kst 6.246000e-01   p_cons 2.998000e-01   p_joint 5.701000e-01

Outputting figure to mutsig2_images.part000000000004/AFF3.14_3848_10000_0.6246_0.2998_0.5701.png
                gene_name: AFF3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 8 percent done.
ADCY8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.050588e-01	ci left: 1.157438e-01	ci right 1.286772e-01	k: 1221	n:10000
Cons ci ratio: 1.703240e-01	ci left: 4.600180e-02	ci right 5.466254e-02	k: 502	n:10000
KS ci ratio: 7.470260e-02	ci left: 2.077708e-01	ci right 2.239950e-01	k: 2158	n:10000
ADCY8   10000 perm   2 sec   (4204 perm/sec)   p_kst 2.158000e-01   p_cons 5.020000e-02   p_joint 1.221000e-01

Joint ci ratio: 9.984730e-02	ci left: 6.796658e-02	ci right 7.515858e-02	k: 1430	n:20000
Cons ci ratio: 1.274676e-01	ci left: 4.226524e-02	ci right 4.806793e-02	k: 902	n:20000
KS ci ratio: 5.370467e-02	ci left: 2.046696e-01	ci right 2.160148e-01	k: 4206	n:20000
ADCY8   20000 perm   5 sec   (3949 perm/sec)   p_kst 2.103000e-01   p_cons 4.510000e-02   p_joint 7.150000e-02

Joint ci ratio: 8.846056e-02	ci left: 5.870939e-02	ci right 6.417592e-02	k: 1842	n:30000
Cons ci ratio: 1.072466e-01	ci left: 4.034245e-02	ci right 4.494666e-02	k: 1278	n:30000
KS ci ratio: 4.145279e-02	ci left: 2.248505e-01	ci right 2.344019e-01	k: 6888	n:30000
ADCY8   30000 perm   8 sec   (3849 perm/sec)   p_kst 2.296000e-01   p_cons 4.260000e-02   p_joint 6.140000e-02

Joint ci ratio: 5.917824e-02	ci left: 9.591717e-02	ci right 1.017912e-01	k: 3953	n:40000
Cons ci ratio: 8.189496e-02	ci left: 5.195210e-02	ci right 5.641290e-02	k: 2166	n:40000
KS ci ratio: 3.585701e-02	ci left: 2.259080e-01	ci right 2.341813e-01	k: 9201	n:40000
ADCY8   40000 perm   11 sec   (3772 perm/sec)   p_kst 2.300250e-01   p_cons 5.415000e-02   p_joint 9.882500e-02

Outputting figure to mutsig2_images.part000000000004/ADCY8.12_3828_40000_0.23003_0.05415_0.098825.png
                gene_name: ADCY8
               theta_stop: 0.082 
                    nperm: 40000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 10 percent done.
ADAMTSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
Cons ci ratio: 1.339316e-01	ci left: 7.359257e-02	ci right 8.425426e-02	k: 788	n:10000
KS ci ratio: 6.346671e-01	ci left: 2.606439e-03	ci right 5.096391e-03	k: 37	n:10000
ADAMTSL1   10000 perm   2 sec   (4054 perm/sec)   p_kst 3.700000e-03   p_cons 7.880000e-02   p_joint 1.340000e-02

Joint ci ratio: 2.146584e-01	ci left: 1.463801e-02	ci right 1.820458e-02	k: 327	n:20000
Cons ci ratio: 9.552987e-02	ci left: 7.392873e-02	ci right 8.139460e-02	k: 1552	n:20000
KS ci ratio: 5.139616e-01	ci left: 2.159255e-03	ci right 3.690949e-03	k: 57	n:20000
ADAMTSL1   20000 perm   5 sec   (3707 perm/sec)   p_kst 2.850000e-03   p_cons 7.760000e-02   p_joint 1.635000e-02

Joint ci ratio: 2.039269e-01	ci left: 1.092521e-02	ci right 1.343725e-02	k: 364	n:30000
Cons ci ratio: 7.750545e-02	ci left: 7.551352e-02	ci right 8.163506e-02	k: 2356	n:30000
KS ci ratio: 4.296732e-01	ci left: 2.174473e-03	ci right 3.391668e-03	k: 82	n:30000
ADAMTSL1   30000 perm   8 sec   (3575 perm/sec)   p_kst 2.733333e-03   p_cons 7.853333e-02   p_joint 1.213333e-02

Joint ci ratio: 2.110586e-01	ci left: 7.647359e-03	ci right 9.475061e-03	k: 341	n:40000
Cons ci ratio: 6.712965e-02	ci left: 7.590705e-02	ci right 8.120432e-02	k: 3141	n:40000
KS ci ratio: 3.838828e-01	ci left: 2.102270e-03	ci right 3.122080e-03	k: 103	n:40000
ADAMTSL1   40000 perm   11 sec   (3487 perm/sec)   p_kst 2.575000e-03   p_cons 7.852500e-02   p_joint 8.525000e-03

Joint ci ratio: 2.365983e-01	ci left: 4.814119e-03	ci right 6.124304e-03	k: 272	n:50000
Cons ci ratio: 6.236930e-02	ci left: 7.093179e-02	ci right 7.551790e-02	k: 3660	n:50000
KS ci ratio: 3.460351e-01	ci left: 2.117910e-03	ci right 3.021389e-03	k: 127	n:50000
ADAMTSL1   50000 perm   15 sec   (3423 perm/sec)   p_kst 2.540000e-03   p_cons 7.320000e-02   p_joint 5.440000e-03

Joint ci ratio: 2.238855e-01	ci left: 4.514274e-03	ci right 5.667729e-03	k: 304	n:60000
Cons ci ratio: 5.718984e-02	ci left: 7.053615e-02	ci right 7.470530e-02	k: 4356	n:60000
KS ci ratio: 3.240239e-01	ci left: 2.039699e-03	ci right 2.842973e-03	k: 145	n:60000
ADAMTSL1   60000 perm   18 sec   (3367 perm/sec)   p_kst 2.416667e-03   p_cons 7.260000e-02   p_joint 5.066667e-03

Joint ci ratio: 2.084092e-01	ci left: 4.504494e-03	ci right 5.565744e-03	k: 351	n:70000
Cons ci ratio: 5.292043e-02	ci left: 7.075894e-02	ci right 7.461942e-02	k: 5087	n:70000
KS ci ratio: 3.020693e-01	ci left: 2.037936e-03	ci right 2.775708e-03	k: 167	n:70000
ADAMTSL1   70000 perm   21 sec   (3313 perm/sec)   p_kst 2.385714e-03   p_cons 7.267143e-02   p_joint 5.014286e-03

Joint ci ratio: 2.377179e-01	ci left: 2.984963e-03	ci right 3.801706e-03	k: 270	n:80000
Cons ci ratio: 4.970036e-02	ci left: 7.035401e-02	ci right 7.395209e-02	k: 5771	n:80000
KS ci ratio: 2.878689e-01	ci left: 1.979970e-03	ci right 2.656932e-03	k: 184	n:80000
ADAMTSL1   80000 perm   24 sec   (3266 perm/sec)   p_kst 2.300000e-03   p_cons 7.213750e-02   p_joint 3.375000e-03

Joint ci ratio: 2.334810e-01	ci left: 2.757814e-03	ci right 3.497008e-03	k: 280	n:90000
Cons ci ratio: 4.595838e-02	ci left: 7.306750e-02	ci right 7.651552e-02	k: 6730	n:90000
KS ci ratio: 2.708356e-01	ci left: 2.007980e-03	ci right 2.646997e-03	k: 208	n:90000
ADAMTSL1   90000 perm   28 sec   (3222 perm/sec)   p_kst 2.311111e-03   p_cons 7.477778e-02   p_joint 3.111111e-03

Joint ci ratio: 2.290643e-01	ci left: 2.585632e-03	ci right 3.263709e-03	k: 291	n:100000
Cons ci ratio: 4.357758e-02	ci left: 7.322636e-02	ci right 7.649835e-02	k: 7485	n:100000
KS ci ratio: 2.581784e-01	ci left: 2.003263e-03	ci right 2.606186e-03	k: 229	n:100000
ADAMTSL1   100000 perm   31 sec   (3180 perm/sec)   p_kst 2.290000e-03   p_cons 7.485000e-02   p_joint 2.910000e-03

Joint ci ratio: 2.248867e-01	ci left: 2.444869e-03	ci right 3.072714e-03	k: 302	n:110000
Cons ci ratio: 4.155397e-02	ci left: 7.328809e-02	ci right 7.640710e-02	k: 8232	n:110000
KS ci ratio: 2.471446e-01	ci left: 1.999973e-03	ci right 2.572230e-03	k: 250	n:110000
ADAMTSL1   110000 perm   35 sec   (3134 perm/sec)   p_kst 2.272727e-03   p_cons 7.483636e-02   p_joint 2.745455e-03

Joint ci ratio: 2.168127e-01	ci left: 2.422193e-03	ci right 3.018909e-03	k: 325	n:120000
Cons ci ratio: 3.976685e-02	ci left: 7.341678e-02	ci right 7.640380e-02	k: 8988	n:120000
KS ci ratio: 2.369782e-01	ci left: 2.005527e-03	ci right 2.552305e-03	k: 272	n:120000
ADAMTSL1   120000 perm   39 sec   (3094 perm/sec)   p_kst 2.266667e-03   p_cons 7.490000e-02   p_joint 2.708333e-03

Joint ci ratio: 2.116895e-01	ci left: 2.352335e-03	ci right 2.916369e-03	k: 341	n:130000
Cons ci ratio: 3.817729e-02	ci left: 7.358148e-02	ci right 7.645289e-02	k: 9751	n:130000
KS ci ratio: 2.268182e-01	ci left: 2.032399e-03	ci right 2.559426e-03	k: 297	n:130000
ADAMTSL1   130000 perm   43 sec   (3057 perm/sec)   p_kst 2.284615e-03   p_cons 7.500769e-02   p_joint 2.623077e-03

Joint ci ratio: 2.129616e-01	ci left: 2.157235e-03	ci right 2.678002e-03	k: 337	n:140000
Cons ci ratio: 3.673594e-02	ci left: 7.383093e-02	ci right 7.660098e-02	k: 10529	n:140000
KS ci ratio: 2.185413e-01	ci left: 2.042353e-03	ci right 2.550041e-03	k: 320	n:140000
ADAMTSL1   140000 perm   46 sec   (3017 perm/sec)   p_kst 2.285714e-03   p_cons 7.520714e-02   p_joint 2.407143e-03

Joint ci ratio: 2.249698e-01	ci left: 1.792834e-03	ci right 2.253422e-03	k: 302	n:150000
Cons ci ratio: 3.550756e-02	ci left: 7.381083e-02	ci right 7.648562e-02	k: 11271	n:150000
KS ci ratio: 2.136132e-01	ci left: 2.000780e-03	ci right 2.485448e-03	k: 335	n:150000
ADAMTSL1   150000 perm   50 sec   (2984 perm/sec)   p_kst 2.233333e-03   p_cons 7.514000e-02   p_joint 2.013333e-03

Joint ci ratio: 2.315865e-01	ci left: 1.580586e-03	ci right 2.000298e-03	k: 285	n:160000
Cons ci ratio: 3.434681e-02	ci left: 7.398681e-02	ci right 7.657860e-02	k: 12044	n:160000
KS ci ratio: 2.078204e-01	ci left: 1.988215e-03	ci right 2.455117e-03	k: 354	n:160000
ADAMTSL1   160000 perm   54 sec   (2949 perm/sec)   p_kst 2.212500e-03   p_cons 7.527500e-02   p_joint 1.781250e-03

Joint ci ratio: 2.303915e-01	ci left: 1.504229e-03	ci right 1.901310e-03	k: 288	n:170000
Cons ci ratio: 3.328730e-02	ci left: 7.416670e-02	ci right 7.668310e-02	k: 12821	n:170000
KS ci ratio: 2.019343e-01	ci left: 1.988454e-03	ci right 2.440556e-03	k: 375	n:170000
ADAMTSL1   170000 perm   58 sec   (2915 perm/sec)   p_kst 2.205882e-03   p_cons 7.541765e-02   p_joint 1.694118e-03

Joint ci ratio: 2.228089e-01	ci left: 1.525468e-03	ci right 1.913085e-03	k: 308	n:180000
Cons ci ratio: 3.232529e-02	ci left: 7.430562e-02	ci right 7.675252e-02	k: 13594	n:180000
KS ci ratio: 1.950499e-01	ci left: 2.020534e-03	ci right 2.462409e-03	k: 402	n:180000
ADAMTSL1   180000 perm   62 sec   (2882 perm/sec)   p_kst 2.233333e-03   p_cons 7.552222e-02   p_joint 1.711111e-03

Joint ci ratio: 2.165893e-01	ci left: 1.534706e-03	ci right 1.912337e-03	k: 326	n:190000
Cons ci ratio: 3.143030e-02	ci left: 7.448310e-02	ci right 7.686670e-02	k: 14377	n:190000
KS ci ratio: 1.912928e-01	ci left: 1.994326e-03	ci right 2.421090e-03	k: 418	n:190000
ADAMTSL1   190000 perm   67 sec   (2847 perm/sec)   p_kst 2.200000e-03   p_cons 7.566842e-02   p_joint 1.715789e-03

Joint ci ratio: 1.657148e-01	ci left: 2.558771e-03	ci right 3.025825e-03	k: 557	n:200000
Cons ci ratio: 3.061121e-02	ci left: 7.461885e-02	ci right 7.694346e-02	k: 15155	n:200000
KS ci ratio: 1.852019e-01	ci left: 2.028016e-03	ci right 2.446620e-03	k: 446	n:200000
ADAMTSL1   200000 perm   71 sec   (2814 perm/sec)   p_kst 2.230000e-03   p_cons 7.577500e-02   p_joint 2.785000e-03

Joint ci ratio: 1.624035e-01	ci left: 2.541950e-03	ci right 2.995757e-03	k: 580	n:210000
Cons ci ratio: 2.986516e-02	ci left: 7.468564e-02	ci right 7.695465e-02	k: 15921	n:210000
KS ci ratio: 1.798478e-01	ci left: 2.054144e-03	ci right 2.464550e-03	k: 473	n:210000
ADAMTSL1   210000 perm   75 sec   (2784 perm/sec)   p_kst 2.252381e-03   p_cons 7.581429e-02   p_joint 2.761905e-03

Joint ci ratio: 1.590193e-01	ci left: 2.535473e-03	ci right 2.977790e-03	k: 605	n:220000
Cons ci ratio: 2.918438e-02	ci left: 7.468378e-02	ci right 7.690014e-02	k: 16673	n:220000
KS ci ratio: 1.772527e-01	ci left: 2.021563e-03	ci right 2.419007e-03	k: 487	n:220000
ADAMTSL1   220000 perm   80 sec   (2754 perm/sec)   p_kst 2.213636e-03   p_cons 7.578636e-02   p_joint 2.750000e-03

Joint ci ratio: 1.546145e-01	ci left: 2.571441e-03	ci right 3.006457e-03	k: 640	n:230000
Cons ci ratio: 2.857563e-02	ci left: 7.454872e-02	ci right 7.671416e-02	k: 17394	n:230000
KS ci ratio: 1.725420e-01	ci left: 2.045924e-03	ci right 2.436354e-03	k: 514	n:230000
ADAMTSL1   230000 perm   85 sec   (2718 perm/sec)   p_kst 2.234783e-03   p_cons 7.562609e-02   p_joint 2.782609e-03

Joint ci ratio: 1.559711e-01	ci left: 2.420231e-03	ci right 2.833593e-03	k: 629	n:240000
Cons ci ratio: 2.796756e-02	ci left: 7.460338e-02	ci right 7.672355e-02	k: 18158	n:240000
KS ci ratio: 1.692870e-01	ci left: 2.040446e-03	ci right 2.421735e-03	k: 534	n:240000
ADAMTSL1   240000 perm   90 sec   (2681 perm/sec)   p_kst 2.225000e-03   p_cons 7.565833e-02   p_joint 2.620833e-03

Joint ci ratio: 1.568554e-01	ci left: 2.296506e-03	ci right 2.691169e-03	k: 622	n:250000
Cons ci ratio: 2.737560e-02	ci left: 7.476143e-02	ci right 7.684042e-02	k: 18949	n:250000
KS ci ratio: 1.648752e-01	ci left: 2.069981e-03	ci right 2.445708e-03	k: 563	n:250000
ADAMTSL1   250000 perm   94 sec   (2653 perm/sec)   p_kst 2.252000e-03   p_cons 7.579600e-02   p_joint 2.488000e-03

Joint ci ratio: 1.554929e-01	ci left: 2.248829e-03	ci right 2.631628e-03	k: 633	n:260000
Cons ci ratio: 2.682485e-02	ci left: 7.488100e-02	ci right 7.692077e-02	k: 19733	n:260000
KS ci ratio: 1.602503e-01	ci left: 2.112130e-03	ci right 2.483719e-03	k: 596	n:260000
ADAMTSL1   260000 perm   99 sec   (2627 perm/sec)   p_kst 2.292308e-03   p_cons 7.589615e-02   p_joint 2.434615e-03

Joint ci ratio: 1.577607e-01	ci left: 2.101472e-03	ci right 2.464899e-03	k: 615	n:270000
Cons ci ratio: 2.632341e-02	ci left: 7.490007e-02	ci right 7.690164e-02	k: 20492	n:270000
KS ci ratio: 1.563676e-01	ci left: 2.140615e-03	ci right 2.507236e-03	k: 626	n:270000
ADAMTSL1   270000 perm   104 sec   (2602 perm/sec)   p_kst 2.318519e-03   p_cons 7.589630e-02   p_joint 2.277778e-03

Joint ci ratio: 1.539327e-01	ci left: 2.132819e-03	ci right 2.491892e-03	k: 646	n:280000
Cons ci ratio: 2.585105e-02	ci left: 7.490745e-02	ci right 7.687277e-02	k: 21248	n:280000
KS ci ratio: 1.531047e-01	ci left: 2.156861e-03	ci right 2.517849e-03	k: 653	n:280000
ADAMTSL1   280000 perm   109 sec   (2572 perm/sec)   p_kst 2.332143e-03   p_cons 7.588571e-02   p_joint 2.307143e-03

Joint ci ratio: 1.511545e-01	ci left: 2.138874e-03	ci right 2.491879e-03	k: 670	n:290000
Cons ci ratio: 2.541574e-02	ci left: 7.484606e-02	ci right 7.677622e-02	k: 21984	n:290000
KS ci ratio: 1.500380e-01	ci left: 2.172060e-03	ci right 2.527657e-03	k: 680	n:290000
ADAMTSL1   290000 perm   114 sec   (2546 perm/sec)   p_kst 2.344828e-03   p_cons 7.580690e-02   p_joint 2.310345e-03

Joint ci ratio: 1.521867e-01	ci left: 2.038709e-03	ci right 2.377689e-03	k: 661	n:300000
Cons ci ratio: 2.501421e-02	ci left: 7.471943e-02	ci right 7.661544e-02	k: 22699	n:300000
KS ci ratio: 1.480949e-01	ci left: 2.157419e-03	ci right 2.505640e-03	k: 698	n:300000
ADAMTSL1   300000 perm   119 sec   (2521 perm/sec)   p_kst 2.326667e-03   p_cons 7.566333e-02   p_joint 2.203333e-03

Joint ci ratio: 1.489573e-01	ci left: 2.062970e-03	ci right 2.398057e-03	k: 690	n:310000
Cons ci ratio: 2.457554e-02	ci left: 7.491554e-02	ci right 7.678272e-02	k: 23512	n:310000
KS ci ratio: 1.451139e-01	ci left: 2.177944e-03	ci right 2.521788e-03	k: 727	n:310000
ADAMTSL1   310000 perm   124 sec   (2498 perm/sec)   p_kst 2.345161e-03   p_cons 7.584516e-02   p_joint 2.225806e-03

Joint ci ratio: 1.488546e-01	ci left: 2.001506e-03	ci right 2.326365e-03	k: 691	n:320000
Cons ci ratio: 2.418607e-02	ci left: 7.494428e-02	ci right 7.678216e-02	k: 24275	n:320000
KS ci ratio: 1.430657e-01	ci left: 2.173142e-03	ci right 2.510972e-03	k: 748	n:320000
ADAMTSL1   320000 perm   129 sec   (2472 perm/sec)   p_kst 2.337500e-03   p_cons 7.585938e-02   p_joint 2.159375e-03

Joint ci ratio: 1.472685e-01	ci left: 1.984623e-03	ci right 2.303008e-03	k: 706	n:330000
Cons ci ratio: 2.383205e-02	ci left: 7.486903e-02	ci right 7.667782e-02	k: 25004	n:330000
KS ci ratio: 1.408272e-01	ci left: 2.177434e-03	ci right 2.510190e-03	k: 772	n:330000
ADAMTSL1   330000 perm   135 sec   (2449 perm/sec)   p_kst 2.339394e-03   p_cons 7.576970e-02   p_joint 2.139394e-03

Joint ci ratio: 1.462404e-01	ci left: 1.954582e-03	ci right 2.265767e-03	k: 716	n:340000
Cons ci ratio: 2.348179e-02	ci left: 7.486568e-02	ci right 7.664744e-02	k: 25756	n:340000
KS ci ratio: 1.387778e-01	ci left: 2.178672e-03	ci right 2.506372e-03	k: 795	n:340000
ADAMTSL1   340000 perm   140 sec   (2426 perm/sec)   p_kst 2.338235e-03   p_cons 7.575294e-02   p_joint 2.105882e-03

Joint ci ratio: 1.438521e-01	ci left: 1.964820e-03	ci right 2.272088e-03	k: 740	n:350000
Cons ci ratio: 2.313945e-02	ci left: 7.490533e-02	ci right 7.666170e-02	k: 26523	n:350000
KS ci ratio: 1.365649e-01	ci left: 2.188152e-03	ci right 2.511604e-03	k: 821	n:350000
ADAMTSL1   350000 perm   146 sec   (2402 perm/sec)   p_kst 2.345714e-03   p_cons 7.578000e-02   p_joint 2.114286e-03

Joint ci ratio: 1.293554e-01	ci left: 2.379817e-03	ci right 2.711604e-03	k: 915	n:360000
Cons ci ratio: 2.281890e-02	ci left: 7.489874e-02	ci right 7.663031e-02	k: 27274	n:360000
KS ci ratio: 1.348536e-01	ci left: 2.183723e-03	ci right 2.502150e-03	k: 842	n:360000
ADAMTSL1   360000 perm   151 sec   (2380 perm/sec)   p_kst 2.338889e-03   p_cons 7.576111e-02   p_joint 2.541667e-03

Joint ci ratio: 1.305075e-01	ci left: 2.273652e-03	ci right 2.593680e-03	k: 899	n:370000
Cons ci ratio: 2.251174e-02	ci left: 7.488999e-02	ci right 7.659775e-02	k: 28024	n:370000
KS ci ratio: 1.328971e-01	ci left: 2.190008e-03	ci right 2.504353e-03	k: 867	n:370000
ADAMTSL1   370000 perm   157 sec   (2356 perm/sec)   p_kst 2.343243e-03   p_cons 7.574054e-02   p_joint 2.429730e-03

Joint ci ratio: 1.288714e-01	ci left: 2.272381e-03	ci right 2.587914e-03	k: 922	n:380000
Cons ci ratio: 2.222168e-02	ci left: 7.485042e-02	ci right 7.653500e-02	k: 28762	n:380000
KS ci ratio: 1.312446e-01	ci left: 2.188358e-03	ci right 2.498256e-03	k: 889	n:380000
ADAMTSL1   380000 perm   163 sec   (2333 perm/sec)   p_kst 2.339474e-03   p_cons 7.568947e-02   p_joint 2.426316e-03

Joint ci ratio: 1.289455e-01	ci left: 2.211629e-03	ci right 2.518916e-03	k: 921	n:390000
Cons ci ratio: 2.193731e-02	ci left: 7.484618e-02	ci right 7.650884e-02	k: 29513	n:390000
KS ci ratio: 1.302259e-01	ci left: 2.166968e-03	ci right 2.471271e-03	k: 903	n:390000
ADAMTSL1   390000 perm   169 sec   (2311 perm/sec)   p_kst 2.315385e-03   p_cons 7.567436e-02   p_joint 2.361538e-03

Joint ci ratio: 1.268297e-01	ci left: 2.231361e-03	ci right 2.535919e-03	k: 952	n:400000
Cons ci ratio: 2.164619e-02	ci left: 7.495423e-02	ci right 7.659692e-02	k: 30309	n:400000
KS ci ratio: 1.284614e-01	ci left: 2.173272e-03	ci right 2.474010e-03	k: 928	n:400000
ADAMTSL1   400000 perm   175 sec   (2291 perm/sec)   p_kst 2.320000e-03   p_cons 7.577250e-02   p_joint 2.380000e-03

Joint ci ratio: 1.250699e-01	ci left: 2.240717e-03	ci right 2.541994e-03	k: 979	n:410000
Cons ci ratio: 2.136487e-02	ci left: 7.506685e-02	ci right 7.669037e-02	k: 31109	n:410000
KS ci ratio: 1.273029e-01	ci left: 2.160402e-03	ci right 2.456458e-03	k: 945	n:410000
ADAMTSL1   410000 perm   181 sec   (2266 perm/sec)   p_kst 2.304878e-03   p_cons 7.587561e-02   p_joint 2.387805e-03

Joint ci ratio: 1.234428e-01	ci left: 2.247347e-03	ci right 2.545298e-03	k: 1005	n:420000
Cons ci ratio: 2.108101e-02	ci left: 7.526191e-02	ci right 7.686775e-02	k: 31946	n:420000
KS ci ratio: 1.253301e-01	ci left: 2.178136e-03	ci right 2.471654e-03	k: 975	n:420000
ADAMTSL1   420000 perm   187 sec   (2246 perm/sec)   p_kst 2.321429e-03   p_cons 7.606190e-02   p_joint 2.392857e-03

Joint ci ratio: 1.222343e-01	ci left: 2.240165e-03	ci right 2.534046e-03	k: 1025	n:430000
Cons ci ratio: 2.083260e-02	ci left: 7.528370e-02	ci right 7.687085e-02	k: 32712	n:430000
KS ci ratio: 1.237549e-01	ci left: 2.183811e-03	ci right 2.474123e-03	k: 1000	n:430000
ADAMTSL1   430000 perm   193 sec   (2225 perm/sec)   p_kst 2.325581e-03   p_cons 7.607442e-02   p_joint 2.383721e-03

Joint ci ratio: 1.238823e-01	ci left: 2.129770e-03	ci right 2.413211e-03	k: 998	n:440000
Cons ci ratio: 2.060742e-02	ci left: 7.520508e-02	ci right 7.677324e-02	k: 33434	n:440000
KS ci ratio: 1.225373e-01	ci left: 2.178233e-03	ci right 2.464748e-03	k: 1020	n:440000
ADAMTSL1   440000 perm   200 sec   (2205 perm/sec)   p_kst 2.318182e-03   p_cons 7.598636e-02   p_joint 2.268182e-03

Joint ci ratio: 1.220621e-01	ci left: 2.147059e-03	ci right 2.428299e-03	k: 1028	n:450000
Cons ci ratio: 2.035620e-02	ci left: 7.535786e-02	ci right 7.690982e-02	k: 34259	n:450000
KS ci ratio: 1.208325e-01	ci left: 2.192311e-03	ci right 2.476380e-03	k: 1049	n:450000
ADAMTSL1   450000 perm   206 sec   (2186 perm/sec)   p_kst 2.331111e-03   p_cons 7.613111e-02   p_joint 2.284444e-03

Joint ci ratio: 1.253428e-01	ci left: 1.988721e-03	ci right 2.256742e-03	k: 975	n:460000
Cons ci ratio: 2.014192e-02	ci left: 7.530936e-02	ci right 7.684381e-02	k: 34994	n:460000
KS ci ratio: 1.201494e-01	ci left: 2.169951e-03	ci right 2.449420e-03	k: 1061	n:460000
ADAMTSL1   460000 perm   212 sec   (2169 perm/sec)   p_kst 2.306522e-03   p_cons 7.607391e-02   p_joint 2.119565e-03

Joint ci ratio: 1.267857e-01	ci left: 1.901070e-03	ci right 2.160449e-03	k: 953	n:470000
Cons ci ratio: 1.993577e-02	ci left: 7.525242e-02	ci right 7.676983e-02	k: 35724	n:470000
KS ci ratio: 1.193108e-01	ci left: 2.154740e-03	ci right 2.430176e-03	k: 1076	n:470000
ADAMTSL1   470000 perm   219 sec   (2149 perm/sec)   p_kst 2.289362e-03   p_cons 7.600851e-02   p_joint 2.027660e-03

Joint ci ratio: 1.289741e-01	ci left: 1.796924e-03	ci right 2.046649e-03	k: 921	n:480000
Cons ci ratio: 1.973612e-02	ci left: 7.519585e-02	ci right 7.669677e-02	k: 36453	n:480000
KS ci ratio: 1.178423e-01	ci left: 2.164432e-03	ci right 2.437464e-03	k: 1103	n:480000
ADAMTSL1   480000 perm   225 sec   (2132 perm/sec)   p_kst 2.297917e-03   p_cons 7.594375e-02   p_joint 1.918750e-03

Joint ci ratio: 1.338656e-01	ci left: 1.629975e-03	ci right 1.865774e-03	k: 855	n:490000
Cons ci ratio: 1.953809e-02	ci left: 7.517215e-02	ci right 7.665736e-02	k: 37197	n:490000
KS ci ratio: 1.160161e-01	ci left: 2.189601e-03	ci right 2.461235e-03	k: 1138	n:490000
ADAMTSL1   490000 perm   232 sec   (2112 perm/sec)   p_kst 2.322449e-03   p_cons 7.591224e-02   p_joint 1.744898e-03

Joint ci ratio: 1.330915e-01	ci left: 1.616707e-03	ci right 1.849127e-03	k: 865	n:500000
Cons ci ratio: 1.935224e-02	ci left: 7.510366e-02	ci right 7.657326e-02	k: 37918	n:500000
KS ci ratio: 1.149615e-01	ci left: 2.186596e-03	ci right 2.455223e-03	k: 1159	n:500000
ADAMTSL1   500000 perm   239 sec   (2095 perm/sec)   p_kst 2.318000e-03   p_cons 7.583600e-02   p_joint 1.730000e-03

Joint ci ratio: 1.321042e-01	ci left: 1.609651e-03	ci right 1.839206e-03	k: 878	n:510000
Cons ci ratio: 1.917187e-02	ci left: 7.503598e-02	ci right 7.649041e-02	k: 38638	n:510000
KS ci ratio: 1.139350e-01	ci left: 2.183719e-03	ci right 2.449437e-03	k: 1180	n:510000
ADAMTSL1   510000 perm   245 sec   (2079 perm/sec)   p_kst 2.313725e-03   p_cons 7.576078e-02   p_joint 1.721569e-03

Joint ci ratio: 1.306261e-01	ci left: 1.615895e-03	ci right 1.843561e-03	k: 898	n:520000
Cons ci ratio: 1.898028e-02	ci left: 7.508967e-02	ci right 7.653044e-02	k: 39420	n:520000
KS ci ratio: 1.128416e-01	ci left: 2.184700e-03	ci right 2.447817e-03	k: 1203	n:520000
ADAMTSL1   520000 perm   252 sec   (2063 perm/sec)   p_kst 2.313462e-03   p_cons 7.580769e-02   p_joint 1.726923e-03

Joint ci ratio: 1.326386e-01	ci left: 1.536136e-03	ci right 1.756162e-03	k: 871	n:530000
Cons ci ratio: 1.879078e-02	ci left: 7.516771e-02	ci right 7.659542e-02	k: 40216	n:530000
KS ci ratio: 1.118704e-01	ci left: 2.181989e-03	ci right 2.442367e-03	k: 1224	n:530000
ADAMTSL1   530000 perm   259 sec   (2047 perm/sec)   p_kst 2.309434e-03   p_cons 7.587925e-02   p_joint 1.643396e-03

Joint ci ratio: 1.123333e-01	ci left: 2.123579e-03	ci right 2.378105e-03	k: 1214	n:540000
Cons ci ratio: 1.861913e-02	ci left: 7.515073e-02	ci right 7.656494e-02	k: 40962	n:540000
KS ci ratio: 1.109685e-01	ci left: 2.177586e-03	ci right 2.435208e-03	k: 1244	n:540000
ADAMTSL1   540000 perm   266 sec   (2032 perm/sec)   p_kst 2.303704e-03   p_cons 7.585556e-02   p_joint 2.248148e-03

Joint ci ratio: 1.114655e-01	ci left: 2.118546e-03	ci right 2.370379e-03	k: 1233	n:550000
Cons ci ratio: 1.845114e-02	ci left: 7.514166e-02	ci right 7.654281e-02	k: 41712	n:550000
KS ci ratio: 1.100010e-01	ci left: 2.176888e-03	ci right 2.432036e-03	k: 1266	n:550000
ADAMTSL1   550000 perm   273 sec   (2014 perm/sec)   p_kst 2.301818e-03   p_cons 7.584000e-02   p_joint 2.241818e-03

Joint ci ratio: 1.125702e-01	ci left: 2.039054e-03	ci right 2.283999e-03	k: 1209	n:560000
Cons ci ratio: 1.828925e-02	ci left: 7.512053e-02	ci right 7.650886e-02	k: 42455	n:560000
KS ci ratio: 1.089313e-01	ci left: 2.181436e-03	ci right 2.434471e-03	k: 1291	n:560000
ADAMTSL1   560000 perm   280 sec   (1998 perm/sec)   p_kst 2.305357e-03   p_cons 7.581250e-02   p_joint 2.158929e-03

Joint ci ratio: 1.117424e-01	ci left: 2.033974e-03	ci right 2.276394e-03	k: 1227	n:570000
Cons ci ratio: 1.813154e-02	ci left: 7.510019e-02	ci right 7.647606e-02	k: 43198	n:570000
KS ci ratio: 1.080982e-01	ci left: 2.177300e-03	ci right 2.427801e-03	k: 1311	n:570000
ADAMTSL1   570000 perm   287 sec   (1983 perm/sec)   p_kst 2.300000e-03   p_cons 7.578596e-02   p_joint 2.152632e-03

Joint ci ratio: 1.104893e-01	ci left: 2.045840e-03	ci right 2.286762e-03	k: 1255	n:580000
Cons ci ratio: 1.797121e-02	ci left: 7.513211e-02	ci right 7.649627e-02	k: 43971	n:580000
KS ci ratio: 1.072435e-01	ci left: 2.174992e-03	ci right 2.423124e-03	k: 1332	n:580000
ADAMTSL1   580000 perm   295 sec   (1969 perm/sec)   p_kst 2.296552e-03   p_cons 7.581207e-02   p_joint 2.163793e-03

Joint ci ratio: 1.094483e-01	ci left: 2.050724e-03	ci right 2.289799e-03	k: 1279	n:590000
Cons ci ratio: 1.781312e-02	ci left: 7.517820e-02	ci right 7.653106e-02	k: 44753	n:590000
KS ci ratio: 1.062908e-01	ci left: 2.177720e-03	ci right 2.423818e-03	k: 1356	n:590000
ADAMTSL1   590000 perm   302 sec   (1954 perm/sec)   p_kst 2.298305e-03   p_cons 7.585254e-02   p_joint 2.167797e-03

Joint ci ratio: 1.123459e-01	ci left: 1.911209e-03	ci right 2.140309e-03	k: 1214	n:600000
Cons ci ratio: 1.767068e-02	ci left: 7.513150e-02	ci right 7.647260e-02	k: 45480	n:600000
KS ci ratio: 1.055164e-01	ci left: 2.173875e-03	ci right 2.417637e-03	k: 1376	n:600000
ADAMTSL1   600000 perm   309 sec   (1939 perm/sec)   p_kst 2.293333e-03   p_cons 7.580000e-02   p_joint 2.023333e-03

Joint ci ratio: 1.109386e-01	ci left: 1.929279e-03	ci right 2.157459e-03	k: 1245	n:610000
Cons ci ratio: 1.752463e-02	ci left: 7.514189e-02	ci right 7.647198e-02	k: 46241	n:610000
KS ci ratio: 1.043105e-01	ci left: 2.189321e-03	ci right 2.431838e-03	k: 1408	n:610000
ADAMTSL1   610000 perm   317 sec   (1924 perm/sec)   p_kst 2.308197e-03   p_cons 7.580492e-02   p_joint 2.040984e-03

Joint ci ratio: 1.101461e-01	ci left: 1.926391e-03	ci right 2.152496e-03	k: 1263	n:620000
Cons ci ratio: 1.738174e-02	ci left: 7.515520e-02	ci right 7.647457e-02	k: 47004	n:620000
KS ci ratio: 1.036146e-01	ci left: 2.183857e-03	ci right 2.424057e-03	k: 1427	n:620000
ADAMTSL1   620000 perm   325 sec   (1910 perm/sec)   p_kst 2.301613e-03   p_cons 7.581290e-02   p_joint 2.037097e-03

Joint ci ratio: 1.092849e-01	ci left: 1.926688e-03	ci right 2.150946e-03	k: 1283	n:630000
Cons ci ratio: 1.724210e-02	ci left: 7.516972e-02	ci right 7.647863e-02	k: 47768	n:630000
KS ci ratio: 1.031111e-01	ci left: 2.170840e-03	ci right 2.408377e-03	k: 1441	n:630000
ADAMTSL1   630000 perm   332 sec   (1897 perm/sec)   p_kst 2.287302e-03   p_cons 7.582222e-02   p_joint 2.036508e-03

Joint ci ratio: 1.089049e-01	ci left: 1.910262e-03	ci right 2.131784e-03	k: 1292	n:640000
Cons ci ratio: 1.711111e-02	ci left: 7.514024e-02	ci right 7.643860e-02	k: 48504	n:640000
KS ci ratio: 1.020892e-01	ci left: 2.181071e-03	ci right 2.417220e-03	k: 1470	n:640000
ADAMTSL1   640000 perm   340 sec   (1884 perm/sec)   p_kst 2.296875e-03   p_cons 7.578750e-02   p_joint 2.018750e-03

Joint ci ratio: 1.080723e-01	ci left: 1.910808e-03	ci right 2.130592e-03	k: 1312	n:650000
Cons ci ratio: 1.697150e-02	ci left: 7.520672e-02	ci right 7.649553e-02	k: 49302	n:650000
KS ci ratio: 1.012663e-01	ci left: 2.183500e-03	ci right 2.417894e-03	k: 1494	n:650000
ADAMTSL1   650000 perm   347 sec   (1871 perm/sec)   p_kst 2.298462e-03   p_cons 7.584923e-02   p_joint 2.018462e-03

Joint ci ratio: 1.078274e-01	ci left: 1.890700e-03	ci right 2.107647e-03	k: 1318	n:660000
Cons ci ratio: 1.683998e-02	ci left: 7.523198e-02	ci right 7.651114e-02	k: 50074	n:660000
KS ci ratio: 1.004300e-01	ci left: 2.187340e-03	ci right 2.420093e-03	k: 1519	n:660000
ADAMTSL1   660000 perm   355 sec   (1858 perm/sec)   p_kst 2.301515e-03   p_cons 7.586970e-02   p_joint 1.996970e-03

Joint ci ratio: 1.076248e-01	ci left: 1.869741e-03	ci right 2.083855e-03	k: 1323	n:670000
Cons ci ratio: 1.671129e-02	ci left: 7.525802e-02	ci right 7.652774e-02	k: 50847	n:670000
KS ci ratio: 9.964628e-02	ci left: 2.189618e-03	ci right 2.420689e-03	k: 1543	n:670000
ADAMTSL1   670000 perm   363 sec   (1845 perm/sec)   p_kst 2.302985e-03   p_cons 7.589104e-02   p_joint 1.974627e-03

Joint ci ratio: 1.069007e-01	ci left: 1.868006e-03	ci right 2.080391e-03	k: 1341	n:680000
Cons ci ratio: 1.659926e-02	ci left: 7.516759e-02	ci right 7.642720e-02	k: 51541	n:680000
KS ci ratio: 9.891229e-02	ci left: 2.190402e-03	ci right 2.419753e-03	k: 1566	n:680000
ADAMTSL1   680000 perm   371 sec   (1832 perm/sec)   p_kst 2.302941e-03   p_cons 7.579559e-02   p_joint 1.972059e-03

Joint ci ratio: 1.149983e-01	ci left: 1.584461e-03	ci right 1.779181e-03	k: 1159	n:690000
Cons ci ratio: 1.648297e-02	ci left: 7.513467e-02	ci right 7.638483e-02	k: 52273	n:690000
KS ci ratio: 9.831832e-02	ci left: 2.185514e-03	ci right 2.412900e-03	k: 1585	n:690000
ADAMTSL1   690000 perm   379 sec   (1820 perm/sec)   p_kst 2.297101e-03   p_cons 7.575797e-02   p_joint 1.679710e-03

Joint ci ratio: 1.139226e-01	ci left: 1.592355e-03	ci right 1.786092e-03	k: 1181	n:700000
Cons ci ratio: 1.635990e-02	ci left: 7.518101e-02	ci right 7.642251e-02	k: 53060	n:700000
KS ci ratio: 9.755233e-02	ci left: 2.189132e-03	ci right 2.415019e-03	k: 1610	n:700000
ADAMTSL1   700000 perm   387 sec   (1808 perm/sec)   p_kst 2.300000e-03   p_cons 7.580000e-02   p_joint 1.687143e-03

Joint ci ratio: 1.141661e-01	ci left: 1.563085e-03	ci right 1.753694e-03	k: 1176	n:710000
Cons ci ratio: 1.624021e-02	ci left: 7.522045e-02	ci right 7.645343e-02	k: 53843	n:710000
KS ci ratio: 9.668557e-02	ci left: 2.198152e-03	ci right 2.422841e-03	k: 1639	n:710000
ADAMTSL1   710000 perm   395 sec   (1795 perm/sec)   p_kst 2.308451e-03   p_cons 7.583521e-02   p_joint 1.656338e-03

Joint ci ratio: 1.137808e-01	ci left: 1.552169e-03	ci right 1.740765e-03	k: 1184	n:720000
Cons ci ratio: 1.612549e-02	ci left: 7.523808e-02	ci right 7.646256e-02	k: 54611	n:720000
KS ci ratio: 9.544112e-02	ci left: 2.225911e-03	ci right 2.450345e-03	k: 1682	n:720000
ADAMTSL1   720000 perm   404 sec   (1784 perm/sec)   p_kst 2.336111e-03   p_cons 7.584861e-02   p_joint 1.644444e-03

Joint ci ratio: 9.295668e-02	ci left: 2.317146e-03	ci right 2.544366e-03	k: 1773	n:730000
Cons ci ratio: 1.601787e-02	ci left: 7.521431e-02	ci right 7.643015e-02	k: 55349	n:730000
KS ci ratio: 9.564222e-02	ci left: 2.186057e-03	ci right 2.406963e-03	k: 1675	n:730000
ADAMTSL1   730000 perm   412 sec   (1771 perm/sec)   p_kst 2.294521e-03   p_cons 7.582055e-02   p_joint 2.428767e-03

Outputting figure to mutsig2_images.part000000000004/ADAMTSL1.11_5409_730000_0.0022945_0.075821_0.0024288.png
                gene_name: ADAMTSL1
               theta_stop: 0.096 
                    nperm: 730000 
                     p_ks: 0.0023 
        ci_ks_bounds_left: 0.0022 
       ci_ks_bounds_right: 0.0024 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.0024 
     ci_joint_bounds_left: 0.0023 
    ci_joint_bounds_right: 0.0025 

Current progress: 12 percent done.
ADCY5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.671973e-01	ci left: 4.772935e-02	ci right 5.653387e-02	k: 520	n:10000
Cons ci ratio: 4.639896e-02	ci left: 4.067137e-01	ci right 4.261351e-01	k: 4164	n:10000
KS ci ratio: 2.657053e-01	ci left: 1.846678e-02	ci right 2.421679e-02	k: 212	n:10000
ADCY5   10000 perm   2 sec   (4334 perm/sec)   p_kst 2.120000e-02   p_cons 4.164000e-01   p_joint 5.200000e-02

Joint ci ratio: 1.294313e-01	ci left: 4.100525e-02	ci right 4.672831e-02	k: 876	n:20000
Cons ci ratio: 3.361486e-02	ci left: 3.978868e-01	ci right 4.115409e-01	k: 8094	n:20000
KS ci ratio: 1.897147e-01	ci left: 1.891468e-02	ci right 2.292630e-02	k: 417	n:20000
ADCY5   20000 perm   5 sec   (3998 perm/sec)   p_kst 2.085000e-02   p_cons 4.047000e-01   p_joint 4.380000e-02

Joint ci ratio: 1.141318e-01	ci left: 3.567012e-02	ci right 4.001997e-02	k: 1134	n:30000
Cons ci ratio: 2.702274e-02	ci left: 4.066553e-01	ci right 4.178284e-01	k: 12367	n:30000
KS ci ratio: 1.546509e-01	ci left: 1.934319e-02	ci right 2.261716e-02	k: 628	n:30000
ADCY5   30000 perm   8 sec   (3836 perm/sec)   p_kst 2.093333e-02   p_cons 4.122333e-01   p_joint 3.780000e-02

Joint ci ratio: 1.010238e-01	ci left: 3.443953e-02	ci right 3.812818e-02	k: 1450	n:40000
Cons ci ratio: 2.341643e-02	ci left: 4.071207e-01	ci right 4.167921e-01	k: 16478	n:40000
KS ci ratio: 1.336611e-01	ci left: 1.964140e-02	ci right 2.247873e-02	k: 841	n:40000
ADCY5   40000 perm   11 sec   (3741 perm/sec)   p_kst 2.102500e-02   p_cons 4.119500e-01   p_joint 3.625000e-02

Joint ci ratio: 8.513112e-02	ci left: 3.894557e-02	ci right 4.242801e-02	k: 2033	n:50000
Cons ci ratio: 2.031794e-02	ci left: 4.223990e-01	ci right 4.310895e-01	k: 21337	n:50000
KS ci ratio: 1.187177e-01	ci left: 2.007172e-02	ci right 2.262427e-02	k: 1066	n:50000
ADCY5   50000 perm   14 sec   (3667 perm/sec)   p_kst 2.132000e-02   p_cons 4.267400e-01   p_joint 4.066000e-02

Joint ci ratio: 7.195470e-02	ci left: 4.543484e-02	ci right 4.884247e-02	k: 2827	n:60000
Cons ci ratio: 1.857521e-02	ci left: 4.220553e-01	ci right 4.299852e-01	k: 25561	n:60000
KS ci ratio: 1.097124e-01	ci left: 1.968918e-02	ci right 2.199083e-02	k: 1249	n:60000
ADCY5   60000 perm   17 sec   (3597 perm/sec)   p_kst 2.081667e-02   p_cons 4.260167e-01   p_joint 4.711667e-02

Joint ci ratio: 5.749479e-02	ci left: 6.047824e-02	ci right 6.407243e-02	k: 4358	n:70000
Cons ci ratio: 1.723771e-02	ci left: 4.212055e-01	ci right 4.285436e-01	k: 29741	n:70000
KS ci ratio: 1.009863e-01	ci left: 2.000629e-02	ci right 2.214795e-02	k: 1474	n:70000
ADCY5   70000 perm   20 sec   (3531 perm/sec)   p_kst 2.105714e-02   p_cons 4.248714e-01   p_joint 6.225714e-02

Joint ci ratio: 5.603316e-02	ci left: 5.603234e-02	ci right 5.927483e-02	k: 4611	n:80000
Cons ci ratio: 1.614993e-02	ci left: 4.206719e-01	ci right 4.275336e-01	k: 33928	n:80000
KS ci ratio: 9.454192e-02	ci left: 2.004199e-02	ci right 2.204296e-02	k: 1682	n:80000
ADCY5   80000 perm   23 sec   (3471 perm/sec)   p_kst 2.102500e-02   p_cons 4.241000e-01   p_joint 5.763750e-02

Outputting figure to mutsig2_images.part000000000004/ADCY5.11_3870_80000_0.021025_0.4241_0.057638.png
                gene_name: ADCY5
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.059 

Current progress: 14 percent done.
ADCY4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.981480e-02	ci left: 7.884733e-01	ci right 8.043536e-01	k: 7965	n:10000
KS ci ratio: 1.875175e-02	ci left: 8.060295e-01	ci right 8.213873e-01	k: 8138	n:10000
ADCY4   10000 perm   2 sec   (4715 perm/sec)   p_kst 8.138000e-01   p_cons 7.965000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADCY4.9_3334_10000_0.8138_0.7965_1.png
                gene_name: ADCY4
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
ADD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.286347e-02	ci left: 5.774761e-01	ci right 5.968731e-01	k: 5872	n:10000
KS ci ratio: 6.352252e-03	ci left: 9.712187e-01	ci right 9.775008e-01	k: 9745	n:10000
ADD2   10000 perm   2 sec   (5473 perm/sec)   p_kst 9.745000e-01   p_cons 5.872000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADD2.9_2470_10000_0.9745_0.5872_1.png
                gene_name: ADD2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
ADNP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.489353e-02	ci left: 7.036192e-01	ci right 7.214569e-01	k: 7126	n:10000
Cons ci ratio: 4.572780e-02	ci left: 4.137890e-01	ci right 4.332556e-01	k: 4235	n:10000
KS ci ratio: 2.118833e-02	ci left: 7.655723e-01	ci right 7.820679e-01	k: 7739	n:10000
ADNP   10000 perm   2 sec   (4662 perm/sec)   p_kst 7.739000e-01   p_cons 4.235000e-01   p_joint 7.126000e-01

Outputting figure to mutsig2_images.part000000000004/ADNP.9_3321_10000_0.7739_0.4235_0.7126.png
                gene_name: ADNP
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 19 percent done.
ADCY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.953441e-02	ci left: 3.754476e-01	ci right 3.946195e-01	k: 3850	n:10000
Cons ci ratio: 6.126117e-02	ci left: 2.815149e-01	ci right 2.994073e-01	k: 2904	n:10000
KS ci ratio: 4.350532e-02	ci left: 4.382197e-01	ci right 4.578106e-01	k: 4480	n:10000
ADCY1   10000 perm   2 sec   (4871 perm/sec)   p_kst 4.480000e-01   p_cons 2.904000e-01   p_joint 3.850000e-01

Outputting figure to mutsig2_images.part000000000004/ADCY1.8_3440_10000_0.448_0.2904_0.385.png
                gene_name: ADCY1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 20 percent done.
ADORA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.037238e-03	ci left: 9.986945e-01	ci right 9.997798e-01	k: 9994	n:10000
KS ci ratio: 2.370020e-02	ci left: 7.235052e-01	ci right 7.409593e-01	k: 7323	n:10000
ADORA1   10000 perm   2 sec   (6141 perm/sec)   p_kst 7.323000e-01   p_cons 9.994000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADORA1.8_989_10000_0.7323_0.9994_1.png
                gene_name: ADORA1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
ADAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.963134e-02	ci left: 7.915161e-01	ci right 8.073091e-01	k: 7995	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ADAR   10000 perm   2 sec   (4661 perm/sec)   p_kst 1   p_cons 7.995000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADAR.7_3741_10000_1_0.7995_1.png
                gene_name: ADAR
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
ADNP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.459463e-02	ci left: 4.260512e-01	ci right 4.455862e-01	k: 4358	n:10000
Cons ci ratio: 7.413363e-02	ci left: 2.103351e-01	ci right 2.266292e-01	k: 2184	n:10000
KS ci ratio: 2.121254e-02	ci left: 7.651672e-01	ci right 7.816732e-01	k: 7735	n:10000
ADNP2   10000 perm   2 sec   (4414 perm/sec)   p_kst 7.735000e-01   p_cons 2.184000e-01   p_joint 4.358000e-01

Outputting figure to mutsig2_images.part000000000004/ADNP2.7_3408_10000_0.7735_0.2184_0.4358.png
                gene_name: ADNP2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 25 percent done.
ADSL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.683164e-02	ci left: 1.339403e-01	ci right 1.476696e-01	k: 1407	n:10000
Cons ci ratio: 2.288572e-01	ci left: 2.523219e-02	ci right 3.184628e-02	k: 284	n:10000
KS ci ratio: 2.555112e-02	ci left: 6.927260e-01	ci right 7.107564e-01	k: 7018	n:10000
ADSL   10000 perm   2 sec   (5986 perm/sec)   p_kst 7.018000e-01   p_cons 2.840000e-02   p_joint 1.407000e-01

Joint ci ratio: 7.178468e-02	ci left: 1.250728e-01	ci right 1.344351e-01	k: 2594	n:20000
Cons ci ratio: 1.598212e-01	ci left: 2.686219e-02	ci right 3.157601e-02	k: 583	n:20000
KS ci ratio: 1.799020e-02	ci left: 6.972167e-01	ci right 7.099240e-01	k: 14072	n:20000
ADSL   20000 perm   4 sec   (5326 perm/sec)   p_kst 7.036000e-01   p_cons 2.915000e-02   p_joint 1.297000e-01

Joint ci ratio: 5.231756e-02	ci left: 1.534935e-01	ci right 1.617729e-01	k: 4728	n:30000
Cons ci ratio: 1.313464e-01	ci left: 2.693656e-02	ci right 3.075541e-02	k: 864	n:30000
KS ci ratio: 1.471724e-02	ci left: 6.975922e-01	ci right 7.079685e-01	k: 21084	n:30000
ADSL   30000 perm   6 sec   (5077 perm/sec)   p_kst 7.028000e-01   p_cons 2.880000e-02   p_joint 1.576000e-01

Joint ci ratio: 4.905757e-02	ci left: 1.342628e-01	ci right 1.410399e-01	k: 5505	n:40000
Cons ci ratio: 1.137159e-01	ci left: 2.720712e-02	ci right 3.051175e-02	k: 1153	n:40000
KS ci ratio: 1.268381e-02	ci left: 7.003278e-01	ci right 7.092924e-01	k: 28193	n:40000
ADSL   40000 perm   8 sec   (4912 perm/sec)   p_kst 7.048250e-01   p_cons 2.882500e-02   p_joint 1.376250e-01

Joint ci ratio: 4.554845e-02	ci left: 1.260735e-01	ci right 1.319697e-01	k: 6450	n:50000
Cons ci ratio: 1.037851e-01	ci left: 2.629849e-02	ci right 2.919669e-02	k: 1386	n:50000
KS ci ratio: 1.136945e-02	ci left: 6.998967e-01	ci right 7.079196e-01	k: 35196	n:50000
ADSL   50000 perm   10 sec   (4783 perm/sec)   p_kst 7.039200e-01   p_cons 2.772000e-02   p_joint 1.290000e-01

Joint ci ratio: 4.370334e-02	ci left: 1.156434e-01	ci right 1.208269e-01	k: 7093	n:60000
Cons ci ratio: 9.391585e-02	ci left: 2.688992e-02	ci right 2.955597e-02	k: 1692	n:60000
KS ci ratio: 1.035861e-02	ci left: 7.010652e-01	ci right 7.083817e-01	k: 42284	n:60000
ADSL   60000 perm   13 sec   (4668 perm/sec)   p_kst 7.047333e-01   p_cons 2.820000e-02   p_joint 1.182167e-01

Outputting figure to mutsig2_images.part000000000004/ADSL.7_1507_60000_0.70473_0.0282_0.11822.png
                gene_name: ADSL
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 27 percent done.
AFM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.669787e-02	ci left: 6.738786e-01	ci right 6.922147e-01	k: 6831	n:10000
Cons ci ratio: 5.154889e-02	ci left: 3.568471e-01	ci right 3.758308e-01	k: 3663	n:10000
KS ci ratio: 3.530301e-02	ci left: 5.422895e-01	ci right 5.618801e-01	k: 5521	n:10000
AFM   10000 perm   2 sec   (5258 perm/sec)   p_kst 5.521000e-01   p_cons 3.663000e-01   p_joint 6.831000e-01

Outputting figure to mutsig2_images.part000000000004/AFM.7_1856_10000_0.5521_0.3663_0.6831.png
                gene_name: AFM
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 29 percent done.
ADCK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.912367e-02	ci left: 6.348262e-01	ci right 6.536897e-01	k: 6443	n:10000
Cons ci ratio: 2.829005e-02	ci left: 6.481042e-01	ci right 6.668040e-01	k: 6575	n:10000
KS ci ratio: 4.792091e-02	ci left: 3.911750e-01	ci right 4.104828e-01	k: 4008	n:10000
ADCK1   10000 perm   2 sec   (5268 perm/sec)   p_kst 4.008000e-01   p_cons 6.575000e-01   p_joint 6.443000e-01

Outputting figure to mutsig2_images.part000000000004/ADCK1.6_1612_10000_0.4008_0.6575_0.6443.png
                gene_name: ADCK1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 31 percent done.
ADCY9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.580278e-02	ci left: 4.129917e-01	ci right 4.324533e-01	k: 4227	n:10000
Cons ci ratio: 2.377877e-02	ci left: 7.221923e-01	ci right 7.396730e-01	k: 7310	n:10000
KS ci ratio: 6.620037e-02	ci left: 2.509293e-01	ci right 2.682110e-01	k: 2595	n:10000
ADCY9   10000 perm   2 sec   (4773 perm/sec)   p_kst 2.595000e-01   p_cons 7.310000e-01   p_joint 4.227000e-01

Outputting figure to mutsig2_images.part000000000004/ADCY9.6_4102_10000_0.2595_0.731_0.4227.png
                gene_name: ADCY9
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 32 percent done.
ADH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.257135e-02	ci left: 9.009330e-01	ci right 9.124288e-01	k: 9068	n:10000
KS ci ratio: 3.889743e-02	ci left: 4.939506e-01	ci right 5.136472e-01	k: 5038	n:10000
ADH6   10000 perm   2 sec   (5826 perm/sec)   p_kst 5.038000e-01   p_cons 9.068000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADH6.6_1168_10000_0.5038_0.9068_1.png
                gene_name: ADH6
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
ADHFE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.138680e-02	ci left: 5.996565e-01	ci right 6.188798e-01	k: 6093	n:10000
Cons ci ratio: 3.726648e-02	ci left: 5.153565e-01	ci right 5.350288e-01	k: 5252	n:10000
KS ci ratio: 5.434929e-02	ci left: 3.327988e-01	ci right 3.514933e-01	k: 3421	n:10000
ADHFE1   10000 perm   2 sec   (5660 perm/sec)   p_kst 3.421000e-01   p_cons 5.252000e-01   p_joint 6.093000e-01

Outputting figure to mutsig2_images.part000000000004/ADHFE1.6_1460_10000_0.3421_0.5252_0.6093.png
                gene_name: ADHFE1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 36 percent done.
ADAMTS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
Cons ci ratio: 5.780619e-02	ci left: 3.058014e-01	ci right 3.241065e-01	k: 3149	n:10000
KS ci ratio: 5.965125e-02	ci left: 2.925144e-01	ci right 3.106013e-01	k: 3015	n:10000
ADAMTS8   10000 perm   2 sec   (5168 perm/sec)   p_kst 3.015000e-01   p_cons 3.149000e-01   p_joint 3.885000e-01

Outputting figure to mutsig2_images.part000000000004/ADAMTS8.5_2706_10000_0.3015_0.3149_0.3885.png
                gene_name: ADAMTS8
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 37 percent done.
ADCY10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.659180e-02	ci left: 8.409140e-01	ci right 8.550827e-01	k: 8481	n:10000
Cons ci ratio: 5.433722e-02	ci left: 3.328981e-01	ci right 3.515939e-01	k: 3422	n:10000
KS ci ratio: 2.153911e-02	ci left: 7.597007e-01	ci right 7.763429e-01	k: 7681	n:10000
ADCY10   10000 perm   2 sec   (4331 perm/sec)   p_kst 7.681000e-01   p_cons 3.422000e-01   p_joint 8.481000e-01

Outputting figure to mutsig2_images.part000000000004/ADCY10.5_4961_10000_0.7681_0.3422_0.8481.png
                gene_name: ADCY10
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 39 percent done.
ADORA2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.660662e-02	ci left: 1.994895e-01	ci right 2.154812e-01	k: 2074	n:10000
Cons ci ratio: 5.551626e-02	ci left: 3.233656e-01	ci right 3.419320e-01	k: 3326	n:10000
KS ci ratio: 9.198086e-02	ci left: 1.465847e-01	ci right 1.608177e-01	k: 1536	n:10000
ADORA2A   10000 perm   2 sec   (6054 perm/sec)   p_kst 1.536000e-01   p_cons 3.326000e-01   p_joint 2.074000e-01

Outputting figure to mutsig2_images.part000000000004/ADORA2A.5_1247_10000_0.1536_0.3326_0.2074.png
                gene_name: ADORA2A
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 41 percent done.
ADRA1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.474272e-02	ci left: 5.502047e-01	ci right 5.697603e-01	k: 5600	n:10000
Cons ci ratio: 4.774183e-02	ci left: 3.929674e-01	ci right 4.122893e-01	k: 4026	n:10000
KS ci ratio: 5.819690e-02	ci left: 3.029251e-01	ci right 3.211845e-01	k: 3120	n:10000
ADRA1A   10000 perm   2 sec   (5873 perm/sec)   p_kst 3.120000e-01   p_cons 4.026000e-01   p_joint 5.600000e-01

Outputting figure to mutsig2_images.part000000000004/ADRA1A.5_1700_10000_0.312_0.4026_0.56.png
                gene_name: ADRA1A
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 42 percent done.
ADRA1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.241139e-02	ci left: 5.841983e-01	ci right 6.035469e-01	k: 5939	n:10000
Cons ci ratio: 5.744651e-02	ci left: 3.084797e-01	ci right 3.268266e-01	k: 3176	n:10000
KS ci ratio: 3.959588e-02	ci left: 4.850534e-01	ci right 5.047496e-01	k: 4949	n:10000
ADRA1B   10000 perm   2 sec   (5775 perm/sec)   p_kst 4.949000e-01   p_cons 3.176000e-01   p_joint 5.939000e-01

Outputting figure to mutsig2_images.part000000000004/ADRA1B.5_1571_10000_0.4949_0.3176_0.5939.png
                gene_name: ADRA1B
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 44 percent done.
AEBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.067437e-01	ci left: 3.110398e-02	ci right 3.837033e-02	k: 346	n:10000
Cons ci ratio: 2.118569e-01	ci left: 2.958536e-02	ci right 3.669001e-02	k: 330	n:10000
KS ci ratio: 2.098973e-01	ci left: 3.015459e-02	ci right 3.732038e-02	k: 336	n:10000
AEBP1   10000 perm   2 sec   (4873 perm/sec)   p_kst 3.360000e-02   p_cons 3.300000e-02   p_joint 3.460000e-02

Joint ci ratio: 1.826955e-01	ci left: 2.044155e-02	ci right 2.459888e-02	k: 449	n:20000
Cons ci ratio: 1.459755e-01	ci left: 3.225460e-02	ci right 3.738180e-02	k: 695	n:20000
KS ci ratio: 1.430211e-01	ci left: 3.360565e-02	ci right 3.883031e-02	k: 723	n:20000
AEBP1   20000 perm   5 sec   (4398 perm/sec)   p_kst 3.615000e-02   p_cons 3.475000e-02   p_joint 2.245000e-02

Joint ci ratio: 1.702378e-01	ci left: 1.588671e-02	ci right 1.887447e-02	k: 520	n:30000
Cons ci ratio: 1.174521e-01	ci left: 3.369361e-02	ci right 3.793023e-02	k: 1073	n:30000
KS ci ratio: 1.195458e-01	ci left: 3.252800e-02	ci right 3.669609e-02	k: 1037	n:30000
AEBP1   30000 perm   7 sec   (4232 perm/sec)   p_kst 3.456667e-02   p_cons 3.576667e-02   p_joint 1.733333e-02

Joint ci ratio: 1.169378e-01	ci left: 2.572495e-02	ci right 2.894417e-02	k: 1092	n:40000
Cons ci ratio: 1.016801e-01	ci left: 3.400054e-02	ci right 3.766724e-02	k: 1432	n:40000
KS ci ratio: 1.033369e-01	ci left: 3.292779e-02	ci right 3.654016e-02	k: 1388	n:40000
AEBP1   40000 perm   10 sec   (4108 perm/sec)   p_kst 3.470000e-02   p_cons 3.580000e-02   p_joint 2.730000e-02

Joint ci ratio: 1.121290e-01	ci left: 2.252056e-02	ci right 2.521511e-02	k: 1192	n:50000
Cons ci ratio: 9.100494e-02	ci left: 3.414937e-02	ci right 3.742481e-02	k: 1788	n:50000
KS ci ratio: 9.137639e-02	ci left: 3.387554e-02	ci right 3.713868e-02	k: 1774	n:50000
AEBP1   50000 perm   13 sec   (3977 perm/sec)   p_kst 3.548000e-02   p_cons 3.576000e-02   p_joint 2.384000e-02

Joint ci ratio: 1.021622e-01	ci left: 2.272510e-02	ci right 2.518791e-02	k: 1436	n:60000
Cons ci ratio: 8.321266e-02	ci left: 3.418055e-02	ci right 3.716458e-02	k: 2139	n:60000
KS ci ratio: 8.297173e-02	ci left: 3.437654e-02	ci right 3.736857e-02	k: 2151	n:60000
AEBP1   60000 perm   15 sec   (3910 perm/sec)   p_kst 3.585000e-02   p_cons 3.565000e-02   p_joint 2.393333e-02

Joint ci ratio: 9.849139e-02	ci left: 2.103761e-02	ci right 2.323083e-02	k: 1548	n:70000
Cons ci ratio: 7.945898e-02	ci left: 3.226331e-02	ci right 3.494696e-02	k: 2351	n:70000
KS ci ratio: 7.681169e-02	ci left: 3.449187e-02	ci right 3.726106e-02	k: 2510	n:70000
AEBP1   70000 perm   18 sec   (3850 perm/sec)   p_kst 3.585714e-02   p_cons 3.358571e-02   p_joint 2.211429e-02

Outputting figure to mutsig2_images.part000000000004/AEBP1.5_3561_70000_0.035857_0.033586_0.022114.png
                gene_name: AEBP1
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 46 percent done.
AFAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.510024e-02	ci left: 7.001892e-01	ci right 7.180889e-01	k: 7092	n:10000
Cons ci ratio: 2.879412e-02	ci left: 6.400560e-01	ci right 6.588569e-01	k: 6495	n:10000
KS ci ratio: 3.714711e-02	ci left: 5.169577e-01	ci right 5.366267e-01	k: 5268	n:10000
AFAP1   10000 perm   2 sec   (5125 perm/sec)   p_kst 5.268000e-01   p_cons 6.495000e-01   p_joint 7.092000e-01

Outputting figure to mutsig2_images.part000000000004/AFAP1.5_2513_10000_0.5268_0.6495_0.7092.png
                gene_name: AFAP1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 47 percent done.
AFF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.437765e-02	ci left: 5.554160e-01	ci right 5.749460e-01	k: 5652	n:10000
Cons ci ratio: 5.681654e-02	ci left: 3.132420e-01	ci right 3.316615e-01	k: 3224	n:10000
KS ci ratio: 2.533769e-02	ci left: 6.962555e-01	ci right 7.142248e-01	k: 7053	n:10000
AFF1   10000 perm   2 sec   (4964 perm/sec)   p_kst 7.053000e-01   p_cons 3.224000e-01   p_joint 5.652000e-01

Outputting figure to mutsig2_images.part000000000004/AFF1.5_3758_10000_0.7053_0.3224_0.5652.png
                gene_name: AFF1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 49 percent done.
AFF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.608933e-02	ci left: 6.838544e-01	ci right 7.020331e-01	k: 6930	n:10000
Cons ci ratio: 4.441376e-02	ci left: 4.280456e-01	ci right 4.475906e-01	k: 4378	n:10000
KS ci ratio: 2.602805e-02	ci left: 6.848624e-01	ci right 7.030245e-01	k: 6940	n:10000
AFF4   10000 perm   2 sec   (5014 perm/sec)   p_kst 6.940000e-01   p_cons 4.378000e-01   p_joint 6.930000e-01

Outputting figure to mutsig2_images.part000000000004/AFF4.5_3572_10000_0.694_0.4378_0.693.png
                gene_name: AFF4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 51 percent done.
ADCY7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.252124e-02	ci left: 1.764483e-01	ci right 1.917362e-01	k: 1840	n:10000
Cons ci ratio: 5.088077e-01	ci left: 4.407042e-03	ci right 7.491475e-03	k: 58	n:10000
KS ci ratio: 4.386771e-02	ci left: 4.341296e-01	ci right 4.537031e-01	k: 4439	n:10000
ADCY7   10000 perm   2 sec   (5356 perm/sec)   p_kst 4.439000e-01   p_cons 5.800000e-03   p_joint 1.840000e-01

Joint ci ratio: 5.708264e-02	ci left: 1.853251e-01	ci right 1.962649e-01	k: 3815	n:20000
Cons ci ratio: 3.797244e-01	ci left: 4.295928e-03	ci right 6.351929e-03	k: 105	n:20000
KS ci ratio: 3.011156e-02	ci left: 4.517257e-01	ci right 4.655864e-01	k: 9173	n:20000
ADCY7   20000 perm   4 sec   (4777 perm/sec)   p_kst 4.586500e-01   p_cons 5.250000e-03   p_joint 1.907500e-01

Joint ci ratio: 6.276255e-02	ci left: 1.114436e-01	ci right 1.186978e-01	k: 3451	n:30000
Cons ci ratio: 3.015816e-01	ci left: 4.756245e-03	ci right 6.474963e-03	k: 167	n:30000
KS ci ratio: 2.456770e-02	ci left: 4.533820e-01	ci right 4.646926e-01	k: 13771	n:30000
ADCY7   30000 perm   7 sec   (4482 perm/sec)   p_kst 4.590333e-01   p_cons 5.566667e-03   p_joint 1.150333e-01

Joint ci ratio: 4.107019e-02	ci left: 1.816764e-01	ci right 1.893193e-01	k: 7419	n:40000
Cons ci ratio: 2.611784e-01	ci left: 4.868911e-03	ci right 6.354248e-03	k: 223	n:40000
KS ci ratio: 2.128012e-02	ci left: 4.540573e-01	ci right 4.638487e-01	k: 18358	n:40000
ADCY7   40000 perm   9 sec   (4402 perm/sec)   p_kst 4.589500e-01   p_cons 5.575000e-03   p_joint 1.854750e-01

Joint ci ratio: 3.607215e-02	ci left: 1.876022e-01	ci right 1.945137e-01	k: 9552	n:50000
Cons ci ratio: 2.315358e-01	ci left: 5.040112e-03	ci right 6.378257e-03	k: 284	n:50000
KS ci ratio: 1.902027e-02	ci left: 4.549244e-01	ci right 4.636803e-01	k: 22965	n:50000
ADCY7   50000 perm   12 sec   (4326 perm/sec)   p_kst 4.593000e-01   p_cons 5.680000e-03   p_joint 1.910400e-01

Joint ci ratio: 3.125297e-02	ci left: 2.044765e-01	ci right 2.109851e-01	k: 12463	n:60000
Cons ci ratio: 2.095221e-01	ci left: 5.192265e-03	ci right 6.422943e-03	k: 347	n:60000
KS ci ratio: 1.738705e-02	ci left: 4.546234e-01	ci right 4.626140e-01	k: 27517	n:60000
ADCY7   60000 perm   14 sec   (4243 perm/sec)   p_kst 4.586167e-01   p_cons 5.783333e-03   p_joint 2.077167e-01

Joint ci ratio: 2.859412e-02	ci left: 2.086218e-01	ci right 2.146879e-01	k: 14815	n:70000
Cons ci ratio: 1.964280e-01	ci left: 5.101380e-03	ci right 6.225907e-03	k: 395	n:70000
KS ci ratio: 1.609094e-02	ci left: 4.551175e-01	ci right 4.625145e-01	k: 32117	n:70000
ADCY7   70000 perm   17 sec   (4180 perm/sec)   p_kst 4.588143e-01   p_cons 5.642857e-03   p_joint 2.116429e-01

Joint ci ratio: 2.746871e-02	ci left: 2.001178e-01	ci right 2.057038e-01	k: 16232	n:80000
Cons ci ratio: 1.824432e-01	ci left: 5.213930e-03	ci right 6.272398e-03	k: 458	n:80000
KS ci ratio: 1.503249e-02	ci left: 4.559919e-01	ci right 4.629110e-01	k: 36756	n:80000
ADCY7   80000 perm   19 sec   (4116 perm/sec)   p_kst 4.594500e-01   p_cons 5.725000e-03   p_joint 2.029000e-01

Joint ci ratio: 2.172288e-02	ci left: 2.627941e-01	ci right 2.685765e-01	k: 23911	n:90000
Cons ci ratio: 1.729166e-01	ci left: 5.186692e-03	ci right 6.178910e-03	k: 510	n:90000
KS ci ratio: 1.416345e-02	ci left: 4.565175e-01	ci right 4.630406e-01	k: 41380	n:90000
ADCY7   90000 perm   22 sec   (4049 perm/sec)   p_kst 4.597778e-01   p_cons 5.666667e-03   p_joint 2.656778e-01

Joint ci ratio: 1.841813e-02	ci left: 3.088796e-01	ci right 3.146314e-01	k: 31175	n:100000
Cons ci ratio: 1.637213e-01	ci left: 5.233192e-03	ci right 6.175826e-03	k: 569	n:100000
KS ci ratio: 1.342011e-02	ci left: 4.572970e-01	ci right 4.634853e-01	k: 46039	n:100000
ADCY7   100000 perm   25 sec   (3988 perm/sec)   p_kst 4.603900e-01   p_cons 5.690000e-03   p_joint 3.117500e-01

Joint ci ratio: 2.203956e-02	ci left: 2.208870e-01	ci right 2.258185e-01	k: 24568	n:110000
Cons ci ratio: 1.586676e-01	ci left: 5.080211e-03	ci right 5.964349e-03	k: 606	n:110000
KS ci ratio: 1.281759e-02	ci left: 4.565879e-01	ci right 4.624870e-01	k: 50549	n:110000
ADCY7   110000 perm   28 sec   (3928 perm/sec)   p_kst 4.595364e-01   p_cons 5.509091e-03   p_joint 2.233455e-01

Joint ci ratio: 1.687897e-02	ci left: 3.074668e-01	ci right 3.127090e-01	k: 37210	n:120000
Cons ci ratio: 1.522810e-01	ci left: 5.073337e-03	ci right 5.917498e-03	k: 658	n:120000
KS ci ratio: 1.226480e-02	ci left: 4.570020e-01	ci right 4.626499e-01	k: 55179	n:120000
ADCY7   120000 perm   31 sec   (3866 perm/sec)   p_kst 4.598250e-01   p_cons 5.483333e-03   p_joint 3.100833e-01

Joint ci ratio: 2.016177e-02	ci left: 2.230006e-01	ci right 2.275501e-01	k: 29285	n:130000
Cons ci ratio: 1.455825e-01	ci left: 5.142250e-03	ci right 5.956967e-03	k: 720	n:130000
KS ci ratio: 1.177859e-02	ci left: 4.573262e-01	ci right 4.627525e-01	k: 59805	n:130000
ADCY7   130000 perm   34 sec   (3805 perm/sec)   p_kst 4.600385e-01   p_cons 5.538462e-03   p_joint 2.252692e-01

Joint ci ratio: 2.094296e-02	ci left: 1.980568e-01	ci right 2.022557e-01	k: 28021	n:140000
Cons ci ratio: 1.403288e-01	ci left: 5.153756e-03	ci right 5.938365e-03	k: 775	n:140000
KS ci ratio: 1.134564e-02	ci left: 4.576222e-01	ci right 4.628509e-01	k: 64433	n:140000
ADCY7   140000 perm   37 sec   (3747 perm/sec)   p_kst 4.602357e-01   p_cons 5.535714e-03   p_joint 2.001500e-01

Joint ci ratio: 1.936788e-02	ci left: 2.124316e-01	ci right 2.165928e-01	k: 32176	n:150000
Cons ci ratio: 1.350349e-01	ci left: 5.209281e-03	ci right 5.970021e-03	k: 837	n:150000
KS ci ratio: 1.095672e-02	ci left: 4.579018e-01	ci right 4.629531e-01	k: 69064	n:150000
ADCY7   150000 perm   41 sec   (3687 perm/sec)   p_kst 4.604267e-01   p_cons 5.580000e-03   p_joint 2.145067e-01

Joint ci ratio: 1.889598e-02	ci left: 2.099558e-01	ci right 2.139671e-01	k: 33913	n:160000
Cons ci ratio: 1.307372e-01	ci left: 5.222069e-03	ci right 5.958521e-03	k: 893	n:160000
KS ci ratio: 1.060044e-02	ci left: 4.583739e-01	ci right 4.632650e-01	k: 73731	n:160000
ADCY7   160000 perm   44 sec   (3630 perm/sec)   p_kst 4.608187e-01   p_cons 5.581250e-03   p_joint 2.119563e-01

Joint ci ratio: 1.926836e-02	ci left: 1.939042e-01	ci right 1.976826e-01	k: 33284	n:170000
Cons ci ratio: 1.272979e-01	ci left: 5.193816e-03	ci right 5.905558e-03	k: 942	n:170000
KS ci ratio: 1.028920e-02	ci left: 4.581931e-01	ci right 4.629377e-01	k: 78296	n:170000
ADCY7   170000 perm   48 sec   (3577 perm/sec)   p_kst 4.605647e-01   p_cons 5.541176e-03   p_joint 1.957882e-01

Joint ci ratio: 1.767904e-02	ci left: 2.126388e-01	ci right 2.164371e-01	k: 38616	n:180000
Cons ci ratio: 1.242424e-01	ci left: 5.158161e-03	ci right 5.846801e-03	k: 989	n:180000
KS ci ratio: 1.000319e-02	ci left: 4.580675e-01	ci right 4.626782e-01	k: 82867	n:180000
ADCY7   180000 perm   51 sec   (3525 perm/sec)   p_kst 4.603722e-01   p_cons 5.494444e-03   p_joint 2.145333e-01

Joint ci ratio: 1.774885e-02	ci left: 2.024680e-01	ci right 2.060989e-01	k: 38813	n:190000
Cons ci ratio: 1.196685e-01	ci left: 5.279601e-03	ci right 5.956670e-03	k: 1066	n:190000
KS ci ratio: 9.730384e-03	ci left: 4.584357e-01	ci right 4.629234e-01	k: 87529	n:190000
ADCY7   190000 perm   55 sec   (3438 perm/sec)   p_kst 4.606789e-01   p_cons 5.610526e-03   p_joint 2.042789e-01

Joint ci ratio: 1.775210e-02	ci left: 1.942721e-01	ci right 1.977567e-01	k: 39202	n:200000
Cons ci ratio: 1.165945e-01	ci left: 5.292202e-03	ci right 5.952251e-03	k: 1123	n:200000
KS ci ratio: 9.481031e-03	ci left: 4.586485e-01	ci right 4.630226e-01	k: 92167	n:200000
ADCY7   200000 perm   59 sec   (3380 perm/sec)   p_kst 4.608350e-01   p_cons 5.615000e-03   p_joint 1.960100e-01

Joint ci ratio: 1.609261e-02	ci left: 2.185289e-01	ci right 2.220788e-01	k: 46263	n:210000
Cons ci ratio: 1.135044e-01	ci left: 5.326940e-03	ci right 5.972535e-03	k: 1185	n:210000
KS ci ratio: 9.247256e-03	ci left: 4.589852e-01	ci right 4.632540e-01	k: 96835	n:210000
ADCY7   210000 perm   64 sec   (3302 perm/sec)   p_kst 4.611190e-01   p_cons 5.642857e-03   p_joint 2.203000e-01

Joint ci ratio: 1.621426e-02	ci left: 2.082044e-01	ci right 2.116124e-01	k: 46179	n:220000
Cons ci ratio: 1.106923e-01	ci left: 5.354309e-03	ci right 5.986095e-03	k: 1246	n:220000
KS ci ratio: 9.037063e-03	ci left: 4.589017e-01	ci right 4.630721e-01	k: 101417	n:220000
ADCY7   220000 perm   67 sec   (3263 perm/sec)   p_kst 4.609864e-01   p_cons 5.663636e-03   p_joint 2.099045e-01

Joint ci ratio: 1.525795e-02	ci left: 2.212828e-01	ci right 2.246894e-01	k: 51286	n:230000
Cons ci ratio: 1.083714e-01	ci left: 5.349863e-03	ci right 5.967043e-03	k: 1300	n:230000
KS ci ratio: 8.841121e-03	ci left: 4.587960e-01	ci right 4.628746e-01	k: 105992	n:230000
ADCY7   230000 perm   71 sec   (3225 perm/sec)   p_kst 4.608348e-01   p_cons 5.652174e-03   p_joint 2.229826e-01

Joint ci ratio: 1.504106e-02	ci left: 2.189216e-01	ci right 2.222435e-01	k: 52939	n:240000
Cons ci ratio: 1.059549e-01	ci left: 5.370254e-03	ci right 5.975112e-03	k: 1360	n:240000
KS ci ratio: 8.648833e-03	ci left: 4.591916e-01	ci right 4.631844e-01	k: 110685	n:240000
ADCY7   240000 perm   75 sec   (3187 perm/sec)   p_kst 4.611875e-01   p_cons 5.666667e-03   p_joint 2.205792e-01

Joint ci ratio: 1.473663e-02	ci left: 2.189679e-01	ci right 2.222226e-01	k: 55148	n:250000
Cons ci ratio: 1.034009e-01	ci left: 5.420330e-03	ci right 6.015217e-03	k: 1428	n:250000
KS ci ratio: 8.478793e-03	ci left: 4.589565e-01	ci right 4.628684e-01	k: 115228	n:250000
ADCY7   250000 perm   80 sec   (3144 perm/sec)   p_kst 4.609120e-01   p_cons 5.712000e-03   p_joint 2.205920e-01

Joint ci ratio: 1.493199e-02	ci left: 2.079639e-01	ci right 2.110964e-01	k: 54477	n:260000
Cons ci ratio: 1.019868e-01	ci left: 5.361742e-03	ci right 5.941669e-03	k: 1468	n:260000
KS ci ratio: 8.318913e-03	ci left: 4.587095e-01	ci right 4.625452e-01	k: 119763	n:260000
ADCY7   260000 perm   84 sec   (3108 perm/sec)   p_kst 4.606269e-01   p_cons 5.646154e-03   p_joint 2.095269e-01

Joint ci ratio: 1.420036e-02	ci left: 2.185458e-01	ci right 2.216751e-01	k: 59429	n:270000
Cons ci ratio: 9.993222e-02	ci left: 5.383383e-03	ci right 5.953233e-03	k: 1529	n:270000
KS ci ratio: 8.154850e-03	ci left: 4.592664e-01	ci right 4.630307e-01	k: 124510	n:270000
ADCY7   270000 perm   88 sec   (3068 perm/sec)   p_kst 4.611481e-01   p_cons 5.662963e-03   p_joint 2.201074e-01

Outputting figure to mutsig2_images.part000000000004/ADCY7.4_3343_270000_0.46115_0.005663_0.22011.png
                gene_name: ADCY7
               theta_stop: 0.100 
                    nperm: 270000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.0057 
      ci_cons_bounds_left: 0.0054 
     ci_cons_bounds_right: 0.0060 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.22 

Current progress: 53 percent done.
ADH1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.251639e-02	ci left: 4.495956e-01	ci right 4.692281e-01	k: 4594	n:10000
Cons ci ratio: 5.315188e-02	ci left: 3.428323e-01	ci right 3.616539e-01	k: 3522	n:10000
KS ci ratio: 6.364781e-02	ci left: 2.661660e-01	ci right 2.837652e-01	k: 2749	n:10000
ADH1C   10000 perm   2 sec   (6567 perm/sec)   p_kst 2.749000e-01   p_cons 3.522000e-01   p_joint 4.594000e-01

Outputting figure to mutsig2_images.part000000000004/ADH1C.4_1164_10000_0.2749_0.3522_0.4594.png
                gene_name: ADH1C
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 54 percent done.
ADIPOQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.625495e-02	ci left: 6.811333e-01	ci right 6.993558e-01	k: 6903	n:10000
Cons ci ratio: 5.046744e-02	ci left: 3.666925e-01	ci right 3.857796e-01	k: 3762	n:10000
KS ci ratio: 3.609511e-02	ci left: 5.312726e-01	ci right 5.509035e-01	k: 5411	n:10000
ADIPOQ   10000 perm   2 sec   (6355 perm/sec)   p_kst 5.411000e-01   p_cons 3.762000e-01   p_joint 6.903000e-01

Outputting figure to mutsig2_images.part000000000004/ADIPOQ.4_743_10000_0.5411_0.3762_0.6903.png
                gene_name: ADIPOQ
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 56 percent done.
AFAP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.671391e-02	ci left: 8.389786e-01	ci right 8.532191e-01	k: 8462	n:10000
KS ci ratio: 1.585788e-02	ci left: 8.524324e-01	ci right 8.661576e-01	k: 8594	n:10000
AFAP1L1   10000 perm   2 sec   (5676 perm/sec)   p_kst 8.594000e-01   p_cons 8.462000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/AFAP1L1.4_2383_10000_0.8594_0.8462_1.png
                gene_name: AFAP1L1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
ADAMTSL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.150350e-02	ci left: 4.615758e-01	ci right 4.812409e-01	k: 4714	n:10000
Cons ci ratio: 1.061076e-02	ci left: 9.266822e-01	ci right 9.366646e-01	k: 9318	n:10000
KS ci ratio: 4.934669e-02	ci left: 3.772388e-01	ci right 3.964272e-01	k: 3868	n:10000
ADAMTSL4   10000 perm   2 sec   (5232 perm/sec)   p_kst 3.868000e-01   p_cons 9.318000e-01   p_joint 4.714000e-01

Outputting figure to mutsig2_images.part000000000004/ADAMTSL4.3_3368_10000_0.3868_0.9318_0.4714.png
                gene_name: ADAMTSL4
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 59 percent done.
ADAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.809519e-03	ci left: 9.476267e-01	ci right 9.561076e-01	k: 9520	n:10000
Cons ci ratio: 1.974146e-02	ci left: 7.896903e-01	ci right 8.055359e-01	k: 7977	n:10000
KS ci ratio: 1.304874e-02	ci left: 8.942609e-01	ci right 9.061049e-01	k: 9003	n:10000
ADAT2   10000 perm   2 sec   (6522 perm/sec)   p_kst 9.003000e-01   p_cons 7.977000e-01   p_joint 9.520000e-01

Outputting figure to mutsig2_images.part000000000004/ADAT2.3_600_10000_0.9003_0.7977_0.952.png
                gene_name: ADAT2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 61 percent done.
ADCK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.925109e-02	ci left: 7.978066e-01	ci right 8.134149e-01	k: 8057	n:10000
KS ci ratio: 3.958604e-03	ci left: 9.878505e-01	ci right 9.918564e-01	k: 9900	n:10000
ADCK4   10000 perm   2 sec   (5929 perm/sec)   p_kst 9.900000e-01   p_cons 8.057000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADCK4.3_1691_10000_0.99_0.8057_1.png
                gene_name: ADCK4
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
ADCYAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.473772e-02	ci left: 8.695851e-01	ci right 8.825950e-01	k: 8762	n:10000
Cons ci ratio: 5.268928e-02	ci left: 3.468072e-01	ci right 3.656766e-01	k: 3562	n:10000
KS ci ratio: 3.304679e-02	ci left: 5.747677e-01	ci right 5.941831e-01	k: 5845	n:10000
ADCYAP1   10000 perm   2 sec   (6597 perm/sec)   p_kst 5.845000e-01   p_cons 3.562000e-01   p_joint 8.762000e-01

Outputting figure to mutsig2_images.part000000000004/ADCYAP1.3_547_10000_0.5845_0.3562_0.8762.png
                gene_name: ADCYAP1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 64 percent done.
ADD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.618131e-02	ci left: 6.823426e-01	ci right 7.005457e-01	k: 6915	n:10000
Cons ci ratio: 7.402527e-02	ci left: 2.108283e-01	ci right 2.271357e-01	k: 2189	n:10000
KS ci ratio: 2.158142e-02	ci left: 7.589922e-01	ci right 7.756518e-01	k: 7674	n:10000
ADD1   10000 perm   2 sec   (5743 perm/sec)   p_kst 7.674000e-01   p_cons 2.189000e-01   p_joint 6.915000e-01

Outputting figure to mutsig2_images.part000000000004/ADD1.3_2401_10000_0.7674_0.2189_0.6915.png
                gene_name: ADD1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 66 percent done.
ADH1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.376126e-02	ci left: 4.353266e-01	ci right 4.549054e-01	k: 4451	n:10000
Cons ci ratio: 2.261969e-02	ci left: 7.415933e-01	ci right 7.586608e-01	k: 7502	n:10000
KS ci ratio: 6.684359e-02	ci left: 2.472706e-01	ci right 2.644719e-01	k: 2558	n:10000
ADH1B   10000 perm   2 sec   (6295 perm/sec)   p_kst 2.558000e-01   p_cons 7.502000e-01   p_joint 4.451000e-01

Outputting figure to mutsig2_images.part000000000004/ADH1B.3_1164_10000_0.2558_0.7502_0.4451.png
                gene_name: ADH1B
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 68 percent done.
ADIPOR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.302908e-01	ci left: 7.756782e-02	ci right 8.847654e-02	k: 829	n:10000
Cons ci ratio: 1.910384e-01	ci left: 3.652992e-02	ci right 4.434069e-02	k: 403	n:10000
KS ci ratio: 6.264161e-02	ci left: 2.725021e-01	ci right 2.902255e-01	k: 2813	n:10000
ADIPOR2   10000 perm   2 sec   (6416 perm/sec)   p_kst 2.813000e-01   p_cons 4.030000e-02   p_joint 8.290000e-02

Joint ci ratio: 8.821853e-02	ci left: 8.587260e-02	ci right 9.384710e-02	k: 1796	n:20000
Cons ci ratio: 1.310014e-01	ci left: 4.003650e-02	ci right 4.569738e-02	k: 856	n:20000
KS ci ratio: 4.431098e-02	ci left: 2.749763e-01	ci right 2.874873e-01	k: 5624	n:20000
ADIPOR2   20000 perm   4 sec   (5695 perm/sec)   p_kst 2.812000e-01   p_cons 4.280000e-02   p_joint 8.980000e-02

Joint ci ratio: 4.847476e-02	ci left: 1.746106e-01	ci right 1.833183e-01	k: 5368	n:30000
Cons ci ratio: 1.084026e-01	ci left: 3.949821e-02	ci right 4.405774e-02	k: 1252	n:30000
KS ci ratio: 3.622911e-02	ci left: 2.755869e-01	ci right 2.857889e-01	k: 8420	n:30000
ADIPOR2   30000 perm   6 sec   (5354 perm/sec)   p_kst 2.806667e-01   p_cons 4.173333e-02   p_joint 1.789333e-01

Joint ci ratio: 4.979951e-02	ci left: 1.307748e-01	ci right 1.374785e-01	k: 5364	n:40000
Cons ci ratio: 9.303065e-02	ci left: 4.051945e-02	ci right 4.449732e-02	k: 1699	n:40000
KS ci ratio: 3.145519e-02	ci left: 2.752552e-01	ci right 2.840768e-01	k: 11186	n:40000
ADIPOR2   40000 perm   8 sec   (5161 perm/sec)   p_kst 2.796500e-01   p_cons 4.247500e-02   p_joint 1.341000e-01

Outputting figure to mutsig2_images.part000000000004/ADIPOR2.3_1189_40000_0.27965_0.042475_0.1341.png
                gene_name: ADIPOR2
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 69 percent done.
ADORA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.361522e-02	ci left: 8.861619e-01	ci right 8.984085e-01	k: 8924	n:10000
Cons ci ratio: 2.179890e-02	ci left: 7.553490e-01	ci right 7.720971e-01	k: 7638	n:10000
KS ci ratio: 2.089156e-02	ci left: 7.705345e-01	ci right 7.869028e-01	k: 7788	n:10000
ADORA3   10000 perm   2 sec   (5885 perm/sec)   p_kst 7.788000e-01   p_cons 7.638000e-01   p_joint 8.924000e-01

Outputting figure to mutsig2_images.part000000000004/ADORA3.3_1790_10000_0.7788_0.7638_0.8924.png
                gene_name: ADORA3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 71 percent done.
ADRA2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.737120e-02	ci left: 5.139556e-01	ci right 5.336306e-01	k: 5238	n:10000
KS ci ratio: 2.773313e-02	ci left: 6.570614e-01	ci right 6.756416e-01	k: 6664	n:10000
ADRA2A   10000 perm   2 sec   (6225 perm/sec)   p_kst 6.664000e-01   p_cons 5.238000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADRA2A.3_1402_10000_0.6664_0.5238_1.png
                gene_name: ADRA2A
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
ADRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.561992e-02	ci left: 2.542921e-01	ci right 2.716462e-01	k: 2629	n:10000
Cons ci ratio: 5.023176e-02	ci left: 3.688810e-01	ci right 3.879899e-01	k: 3784	n:10000
KS ci ratio: 1.473387e-01	ci left: 6.121070e-02	ci right 7.104390e-02	k: 660	n:10000
ADRB1   10000 perm   2 sec   (6057 perm/sec)   p_kst 6.600000e-02   p_cons 3.784000e-01   p_joint 2.629000e-01

Joint ci ratio: 5.900119e-02	ci left: 1.754386e-01	ci right 1.861544e-01	k: 3615	n:20000
Cons ci ratio: 3.594557e-02	ci left: 3.661422e-01	ci right 3.795948e-01	k: 7457	n:20000
KS ci ratio: 1.041864e-01	ci left: 6.264611e-02	ci right 6.958069e-02	k: 1321	n:20000
ADRB1   20000 perm   4 sec   (5363 perm/sec)   p_kst 6.605000e-02   p_cons 3.728500e-01   p_joint 1.807500e-01

Joint ci ratio: 6.038543e-02	ci left: 1.194350e-01	ci right 1.269048e-01	k: 3694	n:30000
Cons ci ratio: 2.930968e-02	ci left: 3.680219e-01	ci right 3.790026e-01	k: 11205	n:30000
KS ci ratio: 8.481686e-02	ci left: 6.364067e-02	ci right 6.931030e-02	k: 1993	n:30000
ADRB1   30000 perm   6 sec   (5110 perm/sec)   p_kst 6.643333e-02   p_cons 3.735000e-01   p_joint 1.231333e-01

Outputting figure to mutsig2_images.part000000000004/ADRB1.3_1438_30000_0.066433_0.3735_0.12313.png
                gene_name: ADRB1
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 75 percent done.
ADAMTSL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.017006e-01	ci left: 1.409482e-02	ci right 1.919237e-02	k: 165	n:10000
Cons ci ratio: 1.759195e-01	ci left: 4.312598e-02	ci right 5.154025e-02	k: 472	n:10000
KS ci ratio: 9.487959e-02	ci left: 1.388391e-01	ci right 1.527680e-01	k: 1457	n:10000
ADAMTSL2   10000 perm   2 sec   (5065 perm/sec)   p_kst 1.457000e-01   p_cons 4.720000e-02   p_joint 1.650000e-02

Joint ci ratio: 1.262282e-01	ci left: 4.308943e-02	ci right 4.894347e-02	k: 919	n:20000
Cons ci ratio: 1.069412e-01	ci left: 5.957399e-02	ci right 6.635376e-02	k: 1258	n:20000
KS ci ratio: 6.721258e-02	ci left: 1.404428e-01	ci right 1.502605e-01	k: 2906	n:20000
ADAMTSL2   20000 perm   4 sec   (4743 perm/sec)   p_kst 1.453000e-01   p_cons 6.290000e-02   p_joint 4.595000e-02

Joint ci ratio: 9.878843e-02	ci left: 4.739802e-02	ci right 5.235628e-02	k: 1495	n:30000
Cons ci ratio: 8.602466e-02	ci left: 6.194193e-02	ci right 6.754272e-02	k: 1941	n:30000
KS ci ratio: 5.441636e-02	ci left: 1.434391e-01	ci right 1.514960e-01	k: 4423	n:30000
ADAMTSL2   30000 perm   7 sec   (4589 perm/sec)   p_kst 1.474333e-01   p_cons 6.470000e-02   p_joint 4.983333e-02

Outputting figure to mutsig2_images.part000000000004/ADAMTSL2.2_2928_30000_0.14743_0.0647_0.049833.png
                gene_name: ADAMTSL2
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.052 

Current progress: 76 percent done.
ADARB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.828377e-02	ci left: 6.482049e-01	ci right 6.669033e-01	k: 6576	n:10000
KS ci ratio: 7.781489e-02	ci left: 1.944641e-01	ci right 2.103097e-01	k: 2023	n:10000
ADARB2   10000 perm   2 sec   (5980 perm/sec)   p_kst 2.023000e-01   p_cons 6.576000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADARB2.2_2260_10000_0.2023_0.6576_1.png
                gene_name: ADARB2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
ADAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.273525e-02	ci left: 3.464097e-01	ci right 3.652744e-01	k: 3558	n:10000
KS ci ratio: 8.742056e-02	ci left: 1.600322e-01	ci right 1.747621e-01	k: 1673	n:10000
ADAT1   10000 perm   2 sec   (6183 perm/sec)   p_kst 1.673000e-01   p_cons 3.558000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADAT1.2_1545_10000_0.1673_0.3558_1.png
                gene_name: ADAT1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
ADCK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.578270e-01	ci left: 5.349797e-02	ci right 6.276153e-02	k: 580	n:10000
Cons ci ratio: 2.344190e-01	ci left: 2.400584e-02	ci right 3.047352e-02	k: 271	n:10000
KS ci ratio: 9.747717e-02	ci left: 1.323733e-01	ci right 1.460376e-01	k: 1391	n:10000
ADCK2   10000 perm   2 sec   (6020 perm/sec)   p_kst 1.391000e-01   p_cons 2.710000e-02   p_joint 5.800000e-02

Joint ci ratio: 1.168744e-01	ci left: 5.012972e-02	ci right 5.640096e-02	k: 1064	n:20000
Cons ci ratio: 1.639141e-01	ci left: 2.551743e-02	ci right 3.012122e-02	k: 555	n:20000
KS ci ratio: 6.867025e-02	ci left: 1.352679e-01	ci right 1.449369e-01	k: 2801	n:20000
ADCK2   20000 perm   4 sec   (5287 perm/sec)   p_kst 1.400500e-01   p_cons 2.775000e-02   p_joint 5.320000e-02

Joint ci ratio: 3.886126e-02	ci left: 2.483199e-01	ci right 2.581946e-01	k: 7597	n:30000
Cons ci ratio: 1.350911e-01	ci left: 2.545300e-02	ci right 2.917264e-02	k: 818	n:30000
KS ci ratio: 5.549484e-02	ci left: 1.386284e-01	ci right 1.465743e-01	k: 4277	n:30000
ADCK2   30000 perm   6 sec   (5009 perm/sec)   p_kst 1.425667e-01   p_cons 2.726667e-02   p_joint 2.532333e-01

Joint ci ratio: 4.586818e-02	ci left: 1.508469e-01	ci right 1.579533e-01	k: 6175	n:40000
Cons ci ratio: 1.183365e-01	ci left: 2.511787e-02	ci right 2.830134e-02	k: 1067	n:40000
KS ci ratio: 4.807482e-02	ci left: 1.390879e-01	ci right 1.459641e-01	k: 5700	n:40000
ADCK2   40000 perm   9 sec   (4705 perm/sec)   p_kst 1.425000e-01   p_cons 2.667500e-02   p_joint 1.543750e-01

Joint ci ratio: 3.178361e-02	ci left: 2.295388e-01	ci right 2.369722e-01	k: 11662	n:50000
Cons ci ratio: 1.059660e-01	ci left: 2.522660e-02	ci right 2.806872e-02	k: 1331	n:50000
KS ci ratio: 4.279747e-02	ci left: 1.405964e-01	ci right 1.467650e-01	k: 7183	n:50000
ADCK2   50000 perm   11 sec   (4464 perm/sec)   p_kst 1.436600e-01   p_cons 2.662000e-02   p_joint 2.332400e-01

Joint ci ratio: 2.893563e-02	ci left: 2.308325e-01	ci right 2.376265e-01	k: 14053	n:60000
Cons ci ratio: 9.594695e-02	ci left: 2.576650e-02	ci right 2.837951e-02	k: 1623	n:60000
KS ci ratio: 3.902052e-02	ci left: 1.411666e-01	ci right 1.468012e-01	k: 8638	n:60000
ADCK2   60000 perm   14 sec   (4404 perm/sec)   p_kst 1.439667e-01   p_cons 2.705000e-02   p_joint 2.342167e-01

Outputting figure to mutsig2_images.part000000000004/ADCK2.2_1913_60000_0.14397_0.02705_0.23422.png
                gene_name: ADCK2
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 81 percent done.
ADCY3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.468637e-02	ci left: 5.510064e-01	ci right 5.705582e-01	k: 5608	n:10000
KS ci ratio: 2.025385e-02	ci left: 7.811735e-01	ci right 7.972577e-01	k: 7893	n:10000
ADCY3   10000 perm   2 sec   (5152 perm/sec)   p_kst 7.893000e-01   p_cons 5.608000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADCY3.2_3519_10000_0.7893_0.5608_1.png
                gene_name: ADCY3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
ADCYAP1R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.219901e-02	ci left: 3.510811e-01	ci right 3.700002e-01	k: 3605	n:10000
KS ci ratio: 1.174385e-02	ci left: 9.121411e-01	ci right 9.230142e-01	k: 9177	n:10000
ADCYAP1R1   10000 perm   2 sec   (6260 perm/sec)   p_kst 9.177000e-01   p_cons 3.605000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADCYAP1R1.2_1467_10000_0.9177_0.3605_1.png
                gene_name: ADCYAP1R1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
ADD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.083585e-02	ci left: 6.080924e-01	ci right 6.272390e-01	k: 6177	n:10000
KS ci ratio: 1.416165e-02	ci left: 8.781755e-01	ci right 8.907995e-01	k: 8846	n:10000
ADD3   10000 perm   2 sec   (6283 perm/sec)   p_kst 8.846000e-01   p_cons 6.177000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADD3.2_2177_10000_0.8846_0.6177_1.png
                gene_name: ADD3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
ADH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.023114e-01	ci left: 1.214132e-01	ci right 1.346043e-01	k: 1279	n:10000
Cons ci ratio: 7.530342e-02	ci left: 2.051084e-01	ci right 2.212590e-01	k: 2131	n:10000
KS ci ratio: 2.385065e-01	ci left: 2.315796e-02	ci right 2.952203e-02	k: 262	n:10000
ADH4   10000 perm   2 sec   (6414 perm/sec)   p_kst 2.620000e-02   p_cons 2.131000e-01   p_joint 1.279000e-01

Joint ci ratio: 1.501612e-01	ci left: 3.047099e-02	ci right 3.546599e-02	k: 658	n:20000
Cons ci ratio: 5.252094e-02	ci left: 2.120960e-01	ci right 2.235861e-01	k: 4356	n:20000
KS ci ratio: 1.622704e-01	ci left: 2.604555e-02	ci right 3.069292e-02	k: 566	n:20000
ADH4   20000 perm   4 sec   (5639 perm/sec)   p_kst 2.830000e-02   p_cons 2.178000e-01   p_joint 3.290000e-02

Joint ci ratio: 1.279587e-01	ci left: 2.838926e-02	ci right 3.230240e-02	k: 909	n:30000
Cons ci ratio: 4.265187e-02	ci left: 2.149923e-01	ci right 2.243954e-01	k: 6590	n:30000
KS ci ratio: 1.326951e-01	ci left: 2.638812e-02	ci right 3.017064e-02	k: 847	n:30000
ADH4   30000 perm   6 sec   (5368 perm/sec)   p_kst 2.823333e-02   p_cons 2.196667e-01   p_joint 3.030000e-02

Joint ci ratio: 1.541956e-01	ci left: 1.467284e-02	ci right 1.714816e-02	k: 635	n:40000
Cons ci ratio: 3.694306e-02	ci left: 2.155759e-01	ci right 2.237148e-01	k: 8785	n:40000
KS ci ratio: 1.159598e-01	ci left: 2.616218e-02	ci right 2.940686e-02	k: 1110	n:40000
ADH4   40000 perm   8 sec   (5180 perm/sec)   p_kst 2.775000e-02   p_cons 2.196250e-01   p_joint 1.587500e-02

Joint ci ratio: 9.623211e-02	ci left: 3.057220e-02	ci right 3.368243e-02	k: 1605	n:50000
Cons ci ratio: 3.310956e-02	ci left: 2.153217e-01	ci right 2.225909e-01	k: 10947	n:50000
KS ci ratio: 1.027983e-01	ci left: 2.680541e-02	ci right 2.972970e-02	k: 1412	n:50000
ADH4   50000 perm   10 sec   (5032 perm/sec)   p_kst 2.824000e-02   p_cons 2.189400e-01   p_joint 3.210000e-02

Joint ci ratio: 1.138262e-01	ci left: 1.827894e-02	ci right 2.050123e-02	k: 1162	n:60000
Cons ci ratio: 3.028026e-02	ci left: 2.150166e-01	ci right 2.216440e-01	k: 13099	n:60000
KS ci ratio: 9.457901e-02	ci left: 2.651538e-02	ci right 2.916389e-02	k: 1669	n:60000
ADH4   60000 perm   12 sec   (4905 perm/sec)   p_kst 2.781667e-02   p_cons 2.183167e-01   p_joint 1.936667e-02

Joint ci ratio: 8.398035e-02	ci left: 2.891659e-02	ci right 3.146541e-02	k: 2112	n:70000
Cons ci ratio: 2.804622e-02	ci left: 2.151165e-01	ci right 2.212497e-01	k: 15272	n:70000
KS ci ratio: 8.768678e-02	ci left: 2.653867e-02	ci right 2.898640e-02	k: 1942	n:70000
ADH4   70000 perm   15 sec   (4791 perm/sec)   p_kst 2.774286e-02   p_cons 2.181714e-01   p_joint 3.017143e-02

Outputting figure to mutsig2_images.part000000000004/ADH4.2_1179_70000_0.027743_0.21817_0.030171.png
                gene_name: ADH4
               theta_stop: 0.088 
                    nperm: 70000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 88 percent done.
ADH7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.242749e-03	ci left: 9.914989e-01	ci right 9.948039e-01	k: 9933	n:10000
Cons ci ratio: 5.549126e-02	ci left: 3.235641e-01	ci right 3.421333e-01	k: 3328	n:10000
KS ci ratio: 2.991605e-02	ci left: 6.223600e-01	ci right 6.413631e-01	k: 6319	n:10000
ADH7   10000 perm   2 sec   (6556 perm/sec)   p_kst 6.319000e-01   p_cons 3.328000e-01   p_joint 9.933000e-01

Outputting figure to mutsig2_images.part000000000004/ADH7.2_1279_10000_0.6319_0.3328_0.9933.png
                gene_name: ADH7
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 90 percent done.
ADM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.908768e-02	ci left: 3.797268e-01	ci right 3.989377e-01	k: 3893	n:10000
KS ci ratio: 3.978354e-03	ci left: 9.877409e-01	ci right 9.917661e-01	k: 9899	n:10000
ADM   10000 perm   1 sec   (6728 perm/sec)   p_kst 9.899000e-01   p_cons 3.893000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000004/ADM.2_570_10000_0.9899_0.3893_1.png
                gene_name: ADM
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
ADRA1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.010601e-02	ci left: 4.786573e-01	ci right 4.983494e-01	k: 4885	n:10000
Cons ci ratio: 6.075972e-02	ci left: 2.848834e-01	ci right 3.028368e-01	k: 2938	n:10000
KS ci ratio: 4.893321e-02	ci left: 3.812197e-01	ci right 4.004439e-01	k: 3908	n:10000
ADRA1D   10000 perm   2 sec   (6254 perm/sec)   p_kst 3.908000e-01   p_cons 2.938000e-01   p_joint 4.885000e-01

Outputting figure to mutsig2_images.part000000000004/ADRA1D.2_1727_10000_0.3908_0.2938_0.4885.png
                gene_name: ADRA1D
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 93 percent done.
ADRBK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.517326e-02	ci left: 6.989787e-01	ci right 7.169000e-01	k: 7080	n:10000
Cons ci ratio: 4.285168e-02	ci left: 4.457032e-01	ci right 4.653227e-01	k: 4555	n:10000
KS ci ratio: 4.319010e-02	ci left: 4.418115e-01	ci right 4.614167e-01	k: 4516	n:10000
ADRBK2   10000 perm   2 sec   (6052 perm/sec)   p_kst 4.516000e-01   p_cons 4.555000e-01   p_joint 7.080000e-01

Outputting figure to mutsig2_images.part000000000004/ADRBK2.2_2151_10000_0.4516_0.4555_0.708.png
                gene_name: ADRBK2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 95 percent done.
ADSS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.080449e-02	ci left: 1.827459e-01	ci right 1.982349e-01	k: 1904	n:10000
Cons ci ratio: 1.582507e-02	ci left: 8.529423e-01	ci right 8.666473e-01	k: 8599	n:10000
KS ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
ADSS   10000 perm   2 sec   (6327 perm/sec)   p_kst 2.820000e-02   p_cons 8.599000e-01   p_joint 1.904000e-01

Joint ci ratio: 9.277284e-02	ci left: 7.813566e-02	ci right 8.578640e-02	k: 1638	n:20000
Cons ci ratio: 1.118918e-02	ci left: 8.550123e-01	ci right 8.646828e-01	k: 17198	n:20000
KS ci ratio: 1.636116e-01	ci left: 2.561344e-02	ci right 3.022518e-02	k: 557	n:20000
ADSS   20000 perm   4 sec   (5605 perm/sec)   p_kst 2.785000e-02   p_cons 8.599000e-01   p_joint 8.190000e-02

Joint ci ratio: 7.564036e-02	ci left: 7.905027e-02	ci right 8.529760e-02	k: 2464	n:30000
Cons ci ratio: 9.167271e-03	ci left: 8.550779e-01	ci right 8.629858e-01	k: 25772	n:30000
KS ci ratio: 1.351760e-01	ci left: 2.542076e-02	ci right 2.913821e-02	k: 817	n:30000
ADSS   30000 perm   6 sec   (5337 perm/sec)   p_kst 2.723333e-02   p_cons 8.590667e-01   p_joint 8.213333e-02

Joint ci ratio: 9.500292e-02	ci left: 3.888223e-02	ci right 4.278478e-02	k: 1632	n:40000
Cons ci ratio: 7.985374e-03	ci left: 8.541874e-01	ci right 8.610606e-01	k: 34306	n:40000
KS ci ratio: 1.152152e-01	ci left: 2.650232e-02	ci right 2.976666e-02	k: 1124	n:40000
ADSS   40000 perm   8 sec   (5149 perm/sec)   p_kst 2.810000e-02   p_cons 8.576500e-01   p_joint 4.080000e-02

Joint ci ratio: 7.323138e-02	ci left: 5.221172e-02	ci right 5.620024e-02	k: 2709	n:50000
Cons ci ratio: 7.151934e-03	ci left: 8.542237e-01	ci right 8.603748e-01	k: 42866	n:50000
KS ci ratio: 1.032125e-01	ci left: 2.659093e-02	ci right 2.950421e-02	k: 1401	n:50000
ADSS   50000 perm   10 sec   (5008 perm/sec)   p_kst 2.802000e-02   p_cons 8.573200e-01   p_joint 5.418000e-02

Joint ci ratio: 7.744632e-02	ci left: 3.936185e-02	ci right 4.254941e-02	k: 2456	n:60000
Cons ci ratio: 6.515057e-03	ci left: 8.550134e-01	ci right 8.606186e-01	k: 51470	n:60000
KS ci ratio: 9.440471e-02	ci left: 2.661308e-02	ci right 2.926618e-02	k: 1675	n:60000
ADSS   60000 perm   12 sec   (4886 perm/sec)   p_kst 2.791667e-02   p_cons 8.578333e-01   p_joint 4.093333e-02

Outputting figure to mutsig2_images.part000000000004/ADSS.2_1423_60000_0.027917_0.85783_0.040933.png
                gene_name: ADSS
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.043 

Current progress: 97 percent done.
AFAP1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.415472e-02	ci left: 8.782779e-01	ci right 8.908971e-01	k: 8847	n:10000
Cons ci ratio: 5.359736e-02	ci left: 3.390568e-01	ci right 3.578316e-01	k: 3484	n:10000
KS ci ratio: 2.487530e-02	ci left: 7.039218e-01	ci right 7.217540e-01	k: 7129	n:10000
AFAP1L2   10000 perm   2 sec   (6061 perm/sec)   p_kst 7.129000e-01   p_cons 3.484000e-01   p_joint 8.847000e-01

Outputting figure to mutsig2_images.part000000000004/AFAP1L2.2_2533_10000_0.7129_0.3484_0.8847.png
                gene_name: AFAP1L2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 98 percent done.
AFG3L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.825135e-02	ci left: 1.926909e-01	ci right 2.084839e-01	k: 2005	n:10000
Cons ci ratio: 5.522995e-02	ci left: 3.256490e-01	ci right 3.442472e-01	k: 3349	n:10000
KS ci ratio: 2.601440e-01	ci left: 1.930852e-02	ci right 2.517438e-02	k: 221	n:10000
AFG3L2   10000 perm   2 sec   (5847 perm/sec)   p_kst 2.210000e-02   p_cons 3.349000e-01   p_joint 2.005000e-01

Joint ci ratio: 7.491910e-02	ci left: 1.158711e-01	ci right 1.249396e-01	k: 2407	n:20000
Cons ci ratio: 3.944677e-02	ci left: 3.239808e-01	ci right 3.370685e-01	k: 6610	n:20000
KS ci ratio: 1.854546e-01	ci left: 1.982091e-02	ci right 2.391974e-02	k: 436	n:20000
AFG3L2   20000 perm   4 sec   (5219 perm/sec)   p_kst 2.180000e-02   p_cons 3.305000e-01   p_joint 1.203500e-01

Joint ci ratio: 3.377829e-02	ci left: 3.045694e-01	ci right 3.150675e-01	k: 9294	n:30000
Cons ci ratio: 3.034945e-02	ci left: 3.519080e-01	ci right 3.627863e-01	k: 10720	n:30000
KS ci ratio: 1.510126e-01	ci left: 2.030570e-02	ci right 2.365443e-02	k: 658	n:30000
AFG3L2   30000 perm   6 sec   (4969 perm/sec)   p_kst 2.193333e-02   p_cons 3.573333e-01   p_joint 3.098000e-01

Joint ci ratio: 4.765160e-02	ci left: 1.412411e-01	ci right 1.481606e-01	k: 5787	n:40000
Cons ci ratio: 2.629292e-02	ci left: 3.524773e-01	ci right 3.618935e-01	k: 14287	n:40000
KS ci ratio: 1.314456e-01	ci left: 2.031864e-02	ci right 2.320137e-02	k: 869	n:40000
AFG3L2   40000 perm   8 sec   (4797 perm/sec)   p_kst 2.172500e-02   p_cons 3.571750e-01   p_joint 1.446750e-01

Joint ci ratio: 3.100745e-02	ci left: 2.384499e-01	ci right 2.459801e-01	k: 12110	n:50000
Cons ci ratio: 2.345679e-02	ci left: 3.541552e-01	ci right 3.625812e-01	k: 17918	n:50000
KS ci ratio: 1.177627e-01	ci left: 2.040187e-02	ci right 2.297408e-02	k: 1083	n:50000
AFG3L2   50000 perm   11 sec   (4651 perm/sec)   p_kst 2.166000e-02   p_cons 3.583600e-01   p_joint 2.422000e-01

Joint ci ratio: 2.210689e-02	ci left: 3.400320e-01	ci right 3.476498e-01	k: 20630	n:60000
Cons ci ratio: 2.135170e-02	ci left: 3.558419e-01	ci right 3.635384e-01	k: 21581	n:60000
KS ci ratio: 1.082619e-01	ci left: 2.022448e-02	ci right 2.255547e-02	k: 1282	n:60000
AFG3L2   60000 perm   14 sec   (4415 perm/sec)   p_kst 2.136667e-02   p_cons 3.596833e-01   p_joint 3.438333e-01

Joint ci ratio: 2.046927e-02	ci left: 3.402665e-01	ci right 3.473178e-01	k: 24065	n:70000
Cons ci ratio: 1.972988e-02	ci left: 3.570131e-01	ci right 3.641413e-01	k: 25240	n:70000
KS ci ratio: 1.000548e-01	ci left: 2.038250e-02	ci right 2.254313e-02	k: 1501	n:70000
AFG3L2   70000 perm   16 sec   (4301 perm/sec)   p_kst 2.144286e-02   p_cons 3.605714e-01   p_joint 3.437857e-01

Joint ci ratio: 2.382468e-02	ci left: 2.498160e-01	ci right 2.558520e-01	k: 20226	n:80000
Cons ci ratio: 1.848358e-02	ci left: 3.565480e-01	ci right 3.632122e-01	k: 28790	n:80000
KS ci ratio: 9.411440e-02	ci left: 2.022515e-02	ci right 2.223478e-02	k: 1697	n:80000
AFG3L2   80000 perm   19 sec   (4243 perm/sec)   p_kst 2.121250e-02   p_cons 3.598750e-01   p_joint 2.528250e-01

Outputting figure to mutsig2_images.part000000000004/AFG3L2.2_2462_80000_0.021212_0.35988_0.25283.png
                gene_name: AFG3L2
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000004
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 4 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1713>
Subject: Job 9893801: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1713>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000005> was used as the working directory.
Started at Fri Oct  5 23:51:23 2012
Results reported at Sat Oct  6 00:01:58 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000005.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000005.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 5  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000005.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    631.89 sec.
    Max Memory :      3397 MB
    Max Swap   :      5902 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
5
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 5
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 5: processing genes 362 - 451
Calculating significance of each gene.
Using projection method.
362	AFP	8.879871e-01
363	AFTPH	4.983666e-01
364	AGA	1.230648e-02
365	AGAP1	2.249390e-01
366	AGAP11	6.726436e-01
367	AGAP2	9.266099e-01
368	AGAP3	8.126157e-01
369	AGAP4	1
370	AGAP7	7.759648e-01
371	AGBL1	6.981147e-01
372	AGBL2	3.940036e-01
373	AGBL4	3.857775e-01
374	AGBL5	9.003713e-01
375	AGER	1
376	AGFG1	3.944602e-01
377	AGFG2	2.918214e-01
378	AGGF1	8.675415e-01
379	AGK	3.402816e-01
380	AGL	1.821027e-01
381	AGMAT	1.354599e-01
382	AGPAT1	1.582687e-01
383	AGPAT2	1
384	AGPAT3	5.021112e-01
385	AGPAT4	1.222114e-03
386	AGPAT5	2.620522e-01
387	AGPAT6	4.638325e-01
388	AGPAT9	3.485721e-01
389	AGPHD1	6.408229e-01
390	AGPS	5.720588e-01
391	AGR2	1
392	AGR3	1
393	AGRN	9.999833e-01
394	AGRP	1
395	AGT	1.355034e-01
396	AGTPBP1	4.087354e-01
397	AGTR1	1.567617e-01
398	AGTR2	7.330319e-03
399	AGTRAP	1
400	AGXT	1
401	AGXT2	2.005449e-01
402	AGXT2L1	2.812244e-02
403	AGXT2L2	6.962650e-01
404	AHCTF1	5.081238e-01
405	AHCY	5.094850e-01
406	AHCYL1	3.351244e-01
407	AHCYL2	3.185446e-02
408	AHDC1	9.707719e-01
409	AHI1	9.609358e-01
410	AHNAK	8.969288e-01
411	AHNAK2	3.275486e-01
412	AHR	3.644523e-01
413	AHRR	9.768094e-01
414	AHSA1	4.433570e-01
415	AHSA2	1
416	AHSG	8.346792e-01
417	AHSP	1
418	AICDA	6.189086e-02
419	AIDA	1
420	AIF1	1
421	AIF1L	1
422	AIFM1	7.990544e-01
423	AIFM2	6.402063e-01
424	AIFM3	8.217577e-01
425	AIG1	6.800031e-01
426	AIM1	2.490388e-01
427	AIM1L	1
428	AIM2	7.203809e-01
429	AIMP1	1
430	AIMP2	3.767111e-01
431	AIP	6.607808e-01
432	AIPL1	7.060900e-01
433	AIRE	8.008322e-01
434	AJAP1	1.262357e-01
435	AK1	1
436	AK2	6.977095e-01
437	AK3	4.226019e-01
438	AK3L1	1
439	AK5	2.210293e-01
440	AK7	4.699295e-01
441	AKAP1	1
442	AKAP10	5.258679e-01
443	AKAP11	7.187910e-01
444	AKAP12	4.156637e-01
445	AKAP13	9.764489e-01
446	AKAP14	4.526402e-01
447	AKAP2	1
448	AKAP3	8.145877e-02
449	AKAP4	3.638956e-01
450	AKAP5	3.243374e-01
451	AKAP6	2.651464e-01
Done

Running MutSig 2:
Scatter job 5: processing genes 362 - 451
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
AHNAK2
Processing conservation and coverage...
57% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.470045e-02	ci left: 5.508059e-01	ci right 5.703587e-01	k: 5606	n:10000
Cons ci ratio: 4.481289e-02	ci left: 4.236581e-01	ci right 4.431807e-01	k: 4334	n:10000
KS ci ratio: 5.310533e-02	ci left: 3.432297e-01	ci right 3.620562e-01	k: 3526	n:10000
AHNAK2   10000 perm   5 sec   (1980 perm/sec)   p_kst 3.526000e-01   p_cons 4.334000e-01   p_joint 5.606000e-01

Outputting figure to mutsig2_images.part000000000005/AHNAK2.37_17416_10000_0.3526_0.4334_0.5606.png
                gene_name: AHNAK2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 2 percent done.
AHNAK
Processing conservation and coverage...
56% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.927474e-03	ci left: 9.349586e-01	ci right 9.443833e-01	k: 9398	n:10000
KS ci ratio: 9.581213e-03	ci left: 9.390015e-01	ci right 9.481380e-01	k: 9437	n:10000
AHNAK   10000 perm   4 sec   (2407 perm/sec)   p_kst 9.437000e-01   p_cons 9.398000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AHNAK.28_17801_10000_0.9437_0.9398_1.png
                gene_name: AHNAK
               theta_stop: 0.0099 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
AKAP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.541967e-01	ci left: 5.600212e-02	ci right 6.545578e-02	k: 606	n:10000
Cons ci ratio: 1.827391e-02	ci left: 8.138514e-01	ci right 8.289609e-01	k: 8215	n:10000
KS ci ratio: 2.543456e-01	ci left: 2.024526e-02	ci right 2.623692e-02	k: 231	n:10000
AKAP6   10000 perm   3 sec   (3504 perm/sec)   p_kst 2.310000e-02   p_cons 8.215000e-01   p_joint 6.060000e-02

Joint ci ratio: 1.102988e-01	ci left: 5.611465e-02	ci right 6.271417e-02	k: 1187	n:20000
Cons ci ratio: 1.292336e-02	ci left: 8.160707e-01	ci right 8.267357e-01	k: 16429	n:20000
KS ci ratio: 1.779009e-01	ci left: 2.158850e-02	ci right 2.585152e-02	k: 473	n:20000
AKAP6   20000 perm   6 sec   (3351 perm/sec)   p_kst 2.365000e-02   p_cons 8.214500e-01   p_joint 5.935000e-02

Joint ci ratio: 9.752563e-02	ci left: 4.860257e-02	ci right 5.361815e-02	k: 1532	n:30000
Cons ci ratio: 1.058830e-02	ci left: 8.160424e-01	ci right 8.247621e-01	k: 24613	n:30000
KS ci ratio: 1.463140e-01	ci left: 2.165471e-02	ci right 2.510512e-02	k: 700	n:30000
AKAP6   30000 perm   9 sec   (3233 perm/sec)   p_kst 2.333333e-02   p_cons 8.204333e-01   p_joint 5.106667e-02

Joint ci ratio: 8.956442e-02	ci left: 4.364954e-02	ci right 4.776673e-02	k: 1827	n:40000
Cons ci ratio: 9.169170e-03	ci left: 8.166530e-01	ci right 8.242004e-01	k: 32818	n:40000
KS ci ratio: 1.323032e-01	ci left: 2.005253e-02	ci right 2.291752e-02	k: 858	n:40000
AKAP6   40000 perm   13 sec   (3167 perm/sec)   p_kst 2.145000e-02   p_cons 8.204500e-01   p_joint 4.567500e-02

Joint ci ratio: 7.591999e-02	ci left: 4.869498e-02	ci right 5.255741e-02	k: 2530	n:50000
Cons ci ratio: 8.203633e-03	ci left: 8.169666e-01	ci right 8.237162e-01	k: 41018	n:50000
KS ci ratio: 1.172113e-01	ci left: 2.059611e-02	ci right 2.317982e-02	k: 1093	n:50000
AKAP6   50000 perm   16 sec   (3148 perm/sec)   p_kst 2.186000e-02   p_cons 8.203600e-01   p_joint 5.060000e-02

Joint ci ratio: 6.811124e-02	ci left: 5.053197e-02	ci right 5.411149e-02	k: 3138	n:60000
Cons ci ratio: 7.502218e-03	ci left: 8.167344e-01	ci right 8.229013e-01	k: 49190	n:60000
KS ci ratio: 1.058425e-01	ci left: 2.116580e-02	ci right 2.354738e-02	k: 1340	n:60000
AKAP6   60000 perm   19 sec   (3113 perm/sec)   p_kst 2.233333e-02   p_cons 8.198333e-01   p_joint 5.230000e-02

Joint ci ratio: 6.152420e-02	ci left: 5.312536e-02	ci right 5.651166e-02	k: 3836	n:70000
Cons ci ratio: 6.958565e-03	ci left: 8.164149e-01	ci right 8.221300e-01	k: 57350	n:70000
KS ci ratio: 9.768824e-02	ci left: 2.138617e-02	ci right 2.359651e-02	k: 1573	n:70000
AKAP6   70000 perm   23 sec   (3045 perm/sec)   p_kst 2.247143e-02   p_cons 8.192857e-01   p_joint 5.480000e-02

Outputting figure to mutsig2_images.part000000000005/AKAP6.16_7008_70000_0.022471_0.81929_0.0548.png
                gene_name: AKAP6
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 5 percent done.
AKAP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.125939e-01	ci left: 1.019814e-01	ci right 1.142479e-01	k: 1080	n:10000
Cons ci ratio: 3.895970e-02	ci left: 4.931507e-01	ci right 5.128476e-01	k: 5030	n:10000
KS ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
AKAP12   10000 perm   3 sec   (3530 perm/sec)   p_kst 4.060000e-02   p_cons 5.030000e-01   p_joint 1.080000e-01

Joint ci ratio: 8.870753e-02	ci left: 8.499069e-02	ci right 9.292928e-02	k: 1778	n:20000
Cons ci ratio: 2.777754e-02	ci left: 4.919461e-01	ci right 5.058542e-01	k: 9978	n:20000
KS ci ratio: 1.325438e-01	ci left: 3.911656e-02	ci right 4.471761e-02	k: 837	n:20000
AKAP12   20000 perm   6 sec   (3387 perm/sec)   p_kst 4.185000e-02   p_cons 4.989000e-01   p_joint 8.890000e-02

Joint ci ratio: 6.767017e-02	ci left: 9.718550e-02	ci right 1.040254e-01	k: 3017	n:30000
Cons ci ratio: 2.251963e-02	ci left: 4.967921e-01	ci right 5.081407e-01	k: 15074	n:30000
KS ci ratio: 1.061673e-01	ci left: 4.115446e-02	ci right 4.580114e-02	k: 1303	n:30000
AKAP12   30000 perm   9 sec   (3274 perm/sec)   p_kst 4.343333e-02   p_cons 5.024667e-01   p_joint 1.005667e-01

Joint ci ratio: 6.576501e-02	ci left: 7.888595e-02	ci right 8.427498e-02	k: 3262	n:40000
Cons ci ratio: 1.946450e-02	ci left: 4.985376e-01	ci right 5.083619e-01	k: 20138	n:40000
KS ci ratio: 9.119702e-02	ci left: 4.213304e-02	ci right 4.618347e-02	k: 1765	n:40000
AKAP12   40000 perm   13 sec   (3170 perm/sec)   p_kst 4.412500e-02   p_cons 5.034500e-01   p_joint 8.155000e-02

Outputting figure to mutsig2_images.part000000000005/AKAP12.14_5390_40000_0.044125_0.50345_0.08155.png
                gene_name: AKAP12
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.084 

Current progress: 7 percent done.
AGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
Cons ci ratio: 5.837354e-02	ci left: 3.016359e-01	ci right 3.198745e-01	k: 3107	n:10000
KS ci ratio: 2.595468e-01	ci left: 1.940213e-02	ci right 2.528070e-02	k: 222	n:10000
AGAP1   10000 perm   2 sec   (4286 perm/sec)   p_kst 2.220000e-02   p_cons 3.107000e-01   p_joint 5.140000e-02

Joint ci ratio: 1.480826e-01	ci left: 3.133844e-02	ci right 3.639826e-02	k: 676	n:20000
Cons ci ratio: 4.106065e-02	ci left: 3.065759e-01	ci right 3.194785e-01	k: 6260	n:20000
KS ci ratio: 1.749006e-01	ci left: 2.235394e-02	ci right 2.668581e-02	k: 489	n:20000
AGAP1   20000 perm   5 sec   (3900 perm/sec)   p_kst 2.445000e-02   p_cons 3.130000e-01   p_joint 3.380000e-02

Joint ci ratio: 1.126948e-01	ci left: 3.657794e-02	ci right 4.097862e-02	k: 1162	n:30000
Cons ci ratio: 3.358706e-02	ci left: 3.069912e-01	ci right 3.175118e-01	k: 9367	n:30000
KS ci ratio: 1.406636e-01	ci left: 2.345587e-02	ci right 2.703688e-02	k: 756	n:30000
AGAP1   30000 perm   8 sec   (3829 perm/sec)   p_kst 2.520000e-02   p_cons 3.122333e-01   p_joint 3.873333e-02

Joint ci ratio: 9.543020e-02	ci left: 3.854024e-02	ci right 4.242683e-02	k: 1618	n:40000
Cons ci ratio: 3.075759e-02	ci left: 2.843367e-01	ci right 2.932439e-01	k: 11551	n:40000
KS ci ratio: 1.231605e-01	ci left: 2.317681e-02	ci right 2.624272e-02	k: 987	n:40000
AGAP1   40000 perm   11 sec   (3752 perm/sec)   p_kst 2.467500e-02   p_cons 2.887750e-01   p_joint 4.045000e-02

Joint ci ratio: 8.810855e-02	ci left: 3.639972e-02	ci right 3.977418e-02	k: 1903	n:50000
Cons ci ratio: 2.556466e-02	ci left: 3.157324e-01	ci right 3.239285e-01	k: 15991	n:50000
KS ci ratio: 1.102041e-01	ci left: 2.331828e-02	ci right 2.605728e-02	k: 1233	n:50000
AGAP1   50000 perm   14 sec   (3665 perm/sec)   p_kst 2.466000e-02   p_cons 3.198200e-01   p_joint 3.806000e-02

Joint ci ratio: 7.749567e-02	ci left: 3.931278e-02	ci right 4.249849e-02	k: 2453	n:60000
Cons ci ratio: 2.334743e-02	ci left: 3.159024e-01	ci right 3.233817e-01	k: 19178	n:60000
KS ci ratio: 1.001800e-01	ci left: 2.363537e-02	ci right 2.614421e-02	k: 1492	n:60000
AGAP1   60000 perm   17 sec   (3625 perm/sec)   p_kst 2.486667e-02   p_cons 3.196333e-01   p_joint 4.088333e-02

Joint ci ratio: 7.124269e-02	ci left: 3.997825e-02	ci right 4.294563e-02	k: 2901	n:70000
Cons ci ratio: 2.155426e-02	ci left: 3.174136e-01	ci right 3.243441e-01	k: 22461	n:70000
KS ci ratio: 9.299085e-02	ci left: 2.360469e-02	ci right 2.592065e-02	k: 1732	n:70000
AGAP1   70000 perm   20 sec   (3444 perm/sec)   p_kst 2.474286e-02   p_cons 3.208714e-01   p_joint 4.144286e-02

Outputting figure to mutsig2_images.part000000000005/AGAP1.10_2646_70000_0.024743_0.32087_0.041443.png
                gene_name: AGAP1
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.043 

Current progress: 9 percent done.
AHCTF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.014647e-02	ci left: 3.696768e-01	ci right 3.887936e-01	k: 3792	n:10000
Cons ci ratio: 1.445485e-01	ci left: 6.352868e-02	ci right 7.352445e-02	k: 684	n:10000
KS ci ratio: 2.248092e-02	ci left: 7.439188e-01	ci right 7.609339e-01	k: 7525	n:10000
AHCTF1   10000 perm   3 sec   (3439 perm/sec)   p_kst 7.525000e-01   p_cons 6.840000e-02   p_joint 3.792000e-01

Joint ci ratio: 4.833180e-02	ci left: 2.414815e-01	ci right 2.534920e-01	k: 4949	n:20000
Cons ci ratio: 1.008760e-01	ci left: 6.664808e-02	ci right 7.377748e-02	k: 1403	n:20000
KS ci ratio: 1.573651e-02	ci left: 7.502377e-01	ci right 7.621877e-01	k: 15125	n:20000
AHCTF1   20000 perm   6 sec   (3317 perm/sec)   p_kst 7.562500e-01   p_cons 7.015000e-02   p_joint 2.474500e-01

Joint ci ratio: 4.193103e-02	ci left: 2.208472e-01	ci right 2.303393e-01	k: 6767	n:30000
Cons ci ratio: 8.163826e-02	ci left: 6.844579e-02	ci right 7.430421e-02	k: 2140	n:30000
KS ci ratio: 1.296207e-02	ci left: 7.480788e-01	ci right 7.578721e-01	k: 22590	n:30000
AHCTF1   30000 perm   10 sec   (3017 perm/sec)   p_kst 7.530000e-01   p_cons 7.133333e-02   p_joint 2.255667e-01

Outputting figure to mutsig2_images.part000000000005/AHCTF1.10_6972_30000_0.753_0.071333_0.22557.png
                gene_name: AHCTF1
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 11 percent done.
AKAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.600512e-02	ci left: 1.645515e-01	ci right 1.794401e-01	k: 1719	n:10000
Cons ci ratio: 1.484236e-01	ci left: 6.034192e-02	ci right 7.011322e-02	k: 651	n:10000
KS ci ratio: 5.699905e-02	ci left: 3.118529e-01	ci right 3.302514e-01	k: 3210	n:10000
AKAP3   10000 perm   2 sec   (4413 perm/sec)   p_kst 3.210000e-01   p_cons 6.510000e-02   p_joint 1.719000e-01

Joint ci ratio: 7.391069e-02	ci left: 1.187242e-01	ci right 1.278856e-01	k: 2465	n:20000
Cons ci ratio: 9.783690e-02	ci left: 7.065356e-02	ci right 7.797078e-02	k: 1485	n:20000
KS ci ratio: 4.055539e-02	ci left: 3.118957e-01	ci right 3.248571e-01	k: 6367	n:20000
AKAP3   20000 perm   5 sec   (3884 perm/sec)   p_kst 3.183500e-01   p_cons 7.425000e-02   p_joint 1.232500e-01

Outputting figure to mutsig2_images.part000000000005/AKAP3.10_2574_20000_0.31835_0.07425_0.12325.png
                gene_name: AKAP3
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 12 percent done.
AGL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.409325e-02	ci left: 7.169415e-01	ci right 7.345268e-01	k: 7258	n:10000
Cons ci ratio: 1.302694e-02	ci left: 8.945686e-01	ci right 9.063969e-01	k: 9006	n:10000
KS ci ratio: 3.259983e-02	ci left: 5.813888e-01	ci right 6.007581e-01	k: 5911	n:10000
AGL   10000 perm   2 sec   (4230 perm/sec)   p_kst 5.911000e-01   p_cons 9.006000e-01   p_joint 7.258000e-01

Outputting figure to mutsig2_images.part000000000005/AGL.9_4800_10000_0.5911_0.9006_0.7258.png
                gene_name: AGL
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 14 percent done.
AIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.048895e-02	ci left: 3.664936e-01	ci right 3.855787e-01	k: 3760	n:10000
Cons ci ratio: 6.237935e-02	ci left: 2.741854e-01	ci right 2.919411e-01	k: 2830	n:10000
KS ci ratio: 4.946129e-02	ci left: 3.761441e-01	ci right 3.953225e-01	k: 3857	n:10000
AIM1   10000 perm   3 sec   (3946 perm/sec)   p_kst 3.857000e-01   p_cons 2.830000e-01   p_joint 3.760000e-01

Outputting figure to mutsig2_images.part000000000005/AIM1.9_5252_10000_0.3857_0.283_0.376.png
                gene_name: AIM1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 16 percent done.
AGPAT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.739355e-02	ci left: 3.088765e-01	ci right 3.272296e-01	k: 3180	n:10000
Cons ci ratio: 1.032447e-02	ci left: 9.301971e-01	ci right 9.399476e-01	k: 9352	n:10000
KS ci ratio: 8.238416e-02	ci left: 1.769402e-01	ci right 1.922440e-01	k: 1845	n:10000
AGPAT4   10000 perm   2 sec   (4439 perm/sec)   p_kst 1.845000e-01   p_cons 9.352000e-01   p_joint 3.180000e-01

Outputting figure to mutsig2_images.part000000000005/AGPAT4.8_1169_10000_0.1845_0.9352_0.318.png
                gene_name: AGPAT4
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 18 percent done.
AGTPBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.863623e-02	ci left: 6.425708e-01	ci right 6.613406e-01	k: 6520	n:10000
Cons ci ratio: 6.465227e-02	ci left: 2.600302e-01	ci right 2.775047e-01	k: 2687	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
AGTPBP1   10000 perm   2 sec   (4336 perm/sec)   p_kst 1   p_cons 2.687000e-01   p_joint 6.520000e-01

Outputting figure to mutsig2_images.part000000000005/AGTPBP1.8_3661_10000_1_0.2687_0.652.png
                gene_name: AGTPBP1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 19 percent done.
AHCYL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.416829e-01	ci left: 6.604181e-02	ci right 7.620974e-02	k: 710	n:10000
Cons ci ratio: 1.696151e-01	ci left: 4.638557e-02	ci right 5.507852e-02	k: 506	n:10000
KS ci ratio: 9.338490e-02	ci left: 1.427601e-01	ci right 1.568446e-01	k: 1497	n:10000
AHCYL2   10000 perm   2 sec   (5170 perm/sec)   p_kst 1.497000e-01   p_cons 5.060000e-02   p_joint 7.100000e-02

Joint ci ratio: 9.021867e-02	ci left: 8.234569e-02	ci right 9.017509e-02	k: 1724	n:20000
Cons ci ratio: 1.244658e-01	ci left: 4.430197e-02	ci right 5.023055e-02	k: 944	n:20000
KS ci ratio: 6.891355e-02	ci left: 1.344303e-01	ci right 1.440748e-01	k: 2784	n:20000
AHCYL2   20000 perm   5 sec   (4346 perm/sec)   p_kst 1.392000e-01   p_cons 4.720000e-02   p_joint 8.620000e-02

Joint ci ratio: 8.025415e-02	ci left: 7.070266e-02	ci right 7.664689e-02	k: 2209	n:30000
Cons ci ratio: 1.013455e-01	ci left: 4.508777e-02	ci right 4.993367e-02	k: 1424	n:30000
KS ci ratio: 5.602285e-02	ci left: 1.363554e-01	ci right 1.442477e-01	k: 4208	n:30000
AHCYL2   30000 perm   7 sec   (4242 perm/sec)   p_kst 1.402667e-01   p_cons 4.746667e-02   p_joint 7.363333e-02

Joint ci ratio: 7.015564e-02	ci left: 6.985440e-02	ci right 7.495789e-02	k: 2895	n:40000
Cons ci ratio: 9.084775e-02	ci left: 4.245096e-02	ci right 4.651550e-02	k: 1778	n:40000
KS ci ratio: 4.755079e-02	ci left: 1.417608e-01	ci right 1.486907e-01	k: 5808	n:40000
AHCYL2   40000 perm   10 sec   (4179 perm/sec)   p_kst 1.452000e-01   p_cons 4.445000e-02   p_joint 7.237500e-02

Outputting figure to mutsig2_images.part000000000005/AHCYL2.8_2026_40000_0.1452_0.04445_0.072375.png
                gene_name: AHCYL2
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.075 

Current progress: 21 percent done.
AKAP13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.679039e-02	ci left: 6.723675e-01	ci right 6.907266e-01	k: 6816	n:10000
Cons ci ratio: 4.469450e-02	ci left: 4.249543e-01	ci right 4.444837e-01	k: 4347	n:10000
KS ci ratio: 2.921266e-02	ci left: 6.334184e-01	ci right 6.522983e-01	k: 6429	n:10000
AKAP13   10000 perm   3 sec   (2938 perm/sec)   p_kst 6.429000e-01   p_cons 4.347000e-01   p_joint 6.816000e-01

Outputting figure to mutsig2_images.part000000000005/AKAP13.8_8656_10000_0.6429_0.4347_0.6816.png
                gene_name: AKAP13
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 23 percent done.
AGXT2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.160472e-02	ci left: 5.963432e-01	ci right 6.155950e-01	k: 6060	n:10000
Cons ci ratio: 3.267405e-02	ci left: 5.802852e-01	ci right 5.996624e-01	k: 5900	n:10000
KS ci ratio: 4.209943e-02	ci left: 4.544868e-01	ci right 4.741340e-01	k: 4643	n:10000
AGXT2L1   10000 perm   2 sec   (5000 perm/sec)   p_kst 4.643000e-01   p_cons 5.900000e-01   p_joint 6.060000e-01

Outputting figure to mutsig2_images.part000000000005/AGXT2L1.7_1557_10000_0.4643_0.59_0.606.png
                gene_name: AGXT2L1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 25 percent done.
AKAP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.211664e-02	ci left: 5.886139e-01	ci right 6.079288e-01	k: 5983	n:10000
Cons ci ratio: 2.939738e-02	ci left: 6.305025e-01	ci right 6.494159e-01	k: 6400	n:10000
KS ci ratio: 4.846382e-02	ci left: 3.857986e-01	ci right 4.050623e-01	k: 3954	n:10000
AKAP11   10000 perm   3 sec   (3797 perm/sec)   p_kst 3.954000e-01   p_cons 6.400000e-01   p_joint 5.983000e-01

Outputting figure to mutsig2_images.part000000000005/AKAP11.7_5750_10000_0.3954_0.64_0.5983.png
                gene_name: AKAP11
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 26 percent done.
AFTPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.107303e-02	ci left: 4.667689e-01	ci right 4.864447e-01	k: 4766	n:10000
Cons ci ratio: 2.639009e-02	ci left: 6.789163e-01	ci right 6.971741e-01	k: 6881	n:10000
KS ci ratio: 6.717872e-02	ci left: 2.453921e-01	ci right 2.625515e-01	k: 2539	n:10000
AFTPH   10000 perm   2 sec   (4671 perm/sec)   p_kst 2.539000e-01   p_cons 6.881000e-01   p_joint 4.766000e-01

Outputting figure to mutsig2_images.part000000000005/AFTPH.6_2850_10000_0.2539_0.6881_0.4766.png
                gene_name: AFTPH
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 28 percent done.
AGBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.298371e-02	ci left: 1.438386e-01	ci right 1.579654e-01	k: 1508	n:10000
Cons ci ratio: 8.513967e-02	ci left: 1.674016e-01	ci right 1.823882e-01	k: 1748	n:10000
KS ci ratio: 9.356863e-02	ci left: 1.422698e-01	ci right 1.563351e-01	k: 1492	n:10000
AGBL1   10000 perm   2 sec   (4896 perm/sec)   p_kst 1.492000e-01   p_cons 1.748000e-01   p_joint 1.508000e-01

Outputting figure to mutsig2_images.part000000000005/AGBL1.6_3293_10000_0.1492_0.1748_0.1508.png
                gene_name: AGBL1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 30 percent done.
AGBL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.691682e-02	ci left: 5.200602e-01	ci right 5.397224e-01	k: 5299	n:10000
KS ci ratio: 1.246706e-02	ci left: 9.023712e-01	ci right 9.137898e-01	k: 9082	n:10000
AGBL2   10000 perm   2 sec   (4074 perm/sec)   p_kst 9.082000e-01   p_cons 5.299000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AGBL2.6_2781_10000_0.9082_0.5299_1.png
                gene_name: AGBL2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
AHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.599437e-02	ci left: 2.521161e-01	ci right 2.694235e-01	k: 2607	n:10000
Cons ci ratio: 3.787610e-02	ci left: 5.072521e-01	ci right 5.269379e-01	k: 5171	n:10000
KS ci ratio: 7.651358e-02	ci left: 1.998838e-01	ci right 2.158868e-01	k: 2078	n:10000
AHR   10000 perm   3 sec   (2928 perm/sec)   p_kst 2.078000e-01   p_cons 5.171000e-01   p_joint 2.607000e-01

Outputting figure to mutsig2_images.part000000000005/AHR.6_2591_10000_0.2078_0.5171_0.2607.png
                gene_name: AHR
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 33 percent done.
AK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.113846e-01	ci left: 1.040292e-01	ci right 1.163989e-01	k: 1101	n:10000
Cons ci ratio: 2.478600e-01	ci left: 2.137124e-02	ci right 2.751008e-02	k: 243	n:10000
KS ci ratio: 4.454932e-02	ci left: 4.265498e-01	ci right 4.460873e-01	k: 4363	n:10000
AK7   10000 perm   2 sec   (4851 perm/sec)   p_kst 4.363000e-01   p_cons 2.430000e-02   p_joint 1.101000e-01

Joint ci ratio: 9.249649e-02	ci left: 7.857610e-02	ci right 8.624582e-02	k: 1647	n:20000
Cons ci ratio: 1.767584e-01	ci left: 2.187547e-02	ci right 2.616445e-02	k: 479	n:20000
KS ci ratio: 3.041958e-02	ci left: 4.466825e-01	ci right 4.605309e-01	k: 9072	n:20000
AK7   20000 perm   5 sec   (4196 perm/sec)   p_kst 4.536000e-01   p_cons 2.395000e-02   p_joint 8.235000e-02

Joint ci ratio: 6.747149e-02	ci left: 9.771078e-02	ci right 1.045667e-01	k: 3033	n:30000
Cons ci ratio: 1.454663e-01	ci left: 2.191185e-02	ci right 2.538125e-02	k: 708	n:30000
KS ci ratio: 2.474320e-02	ci left: 4.498524e-01	ci right 4.611562e-01	k: 13665	n:30000
AK7   30000 perm   8 sec   (3855 perm/sec)   p_kst 4.555000e-01   p_cons 2.360000e-02   p_joint 1.011000e-01

Joint ci ratio: 5.912847e-02	ci left: 9.606518e-02	ci right 1.019432e-01	k: 3959	n:40000
Cons ci ratio: 1.252562e-01	ci left: 2.240110e-02	ci right 2.541856e-02	k: 955	n:40000
KS ci ratio: 2.239688e-02	ci left: 4.288109e-01	ci right 4.385488e-01	k: 17347	n:40000
AK7   40000 perm   10 sec   (3810 perm/sec)   p_kst 4.336750e-01   p_cons 2.387500e-02   p_joint 9.897500e-02

Joint ci ratio: 5.178437e-02	ci left: 1.001511e-01	ci right 1.054951e-01	k: 5140	n:50000
Cons ci ratio: 1.154959e-01	ci left: 2.121787e-02	ci right 2.383797e-02	k: 1125	n:50000
KS ci ratio: 1.966233e-02	ci left: 4.384995e-01	ci right 4.472271e-01	k: 22143	n:50000
AK7   50000 perm   13 sec   (3720 perm/sec)   p_kst 4.428600e-01   p_cons 2.250000e-02   p_joint 1.028000e-01

Joint ci ratio: 4.859220e-02	ci left: 9.546733e-02	ci right 1.002383e-01	k: 5870	n:60000
Cons ci ratio: 1.058021e-01	ci left: 2.118204e-02	ci right 2.356447e-02	k: 1341	n:60000
KS ci ratio: 1.795509e-02	ci left: 4.387201e-01	ci right 4.466854e-01	k: 26562	n:60000
AK7   60000 perm   16 sec   (3741 perm/sec)   p_kst 4.427000e-01   p_cons 2.235000e-02   p_joint 9.783333e-02

Joint ci ratio: 4.658598e-02	ci left: 8.971321e-02	ci right 9.400640e-02	k: 6429	n:70000
Cons ci ratio: 9.813565e-02	ci left: 2.119097e-02	ci right 2.339174e-02	k: 1559	n:70000
KS ci ratio: 1.658193e-02	ci left: 4.402432e-01	ci right 4.476186e-01	k: 31075	n:70000
AK7   70000 perm   19 sec   (3742 perm/sec)   p_kst 4.439286e-01   p_cons 2.227143e-02   p_joint 9.184286e-02

Outputting figure to mutsig2_images.part000000000005/AK7.6_2244_70000_0.44393_0.022271_0.091843.png
                gene_name: AK7
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.094 

Current progress: 35 percent done.
AGA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.736711e-02	ci left: 3.090749e-01	ci right 3.274310e-01	k: 3182	n:10000
KS ci ratio: 2.036945e-02	ci left: 7.792477e-01	ci right 7.953845e-01	k: 7874	n:10000
AGA   10000 perm   2 sec   (5681 perm/sec)   p_kst 7.874000e-01   p_cons 3.182000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AGA.5_1077_10000_0.7874_0.3182_1.png
                gene_name: AGA
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
AGAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.939328e-02	ci left: 1.278700e-01	ci right 1.413437e-01	k: 1345	n:10000
Cons ci ratio: 9.735533e-02	ci left: 1.326671e-01	ci right 1.463436e-01	k: 1394	n:10000
KS ci ratio: 1.198041e-01	ci left: 9.087811e-02	ci right 1.025580e-01	k: 966	n:10000
AGAP2   10000 perm   2 sec   (4414 perm/sec)   p_kst 9.660000e-02   p_cons 1.394000e-01   p_joint 1.345000e-01

Joint ci ratio: 9.699335e-02	ci left: 7.182651e-02	ci right 7.919747e-02	k: 1509	n:20000
Cons ci ratio: 6.888482e-02	ci left: 1.345289e-01	ci right 1.441763e-01	k: 2786	n:20000
KS ci ratio: 8.231076e-02	ci left: 9.764233e-02	ci right 1.060738e-01	k: 2036	n:20000
AGAP2   20000 perm   5 sec   (4261 perm/sec)   p_kst 1.018000e-01   p_cons 1.393000e-01   p_joint 7.545000e-02

Outputting figure to mutsig2_images.part000000000005/AGAP2.5_3819_20000_0.1018_0.1393_0.07545.png
                gene_name: AGAP2
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.079 

Current progress: 39 percent done.
AGT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.828636e-02	ci left: 8.136481e-01	ci right 8.287643e-01	k: 8213	n:10000
KS ci ratio: 1.583164e-02	ci left: 8.528403e-01	ci right 8.665494e-01	k: 8598	n:10000
AGT   10000 perm   2 sec   (5726 perm/sec)   p_kst 8.598000e-01   p_cons 8.213000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AGT.5_1474_10000_0.8598_0.8213_1.png
                gene_name: AGT
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
AGTR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.483278e-02	ci left: 7.046281e-01	ci right 7.224473e-01	k: 7136	n:10000
Cons ci ratio: 6.251794e-02	ci left: 2.732942e-01	ci right 2.910328e-01	k: 2821	n:10000
KS ci ratio: 3.112378e-02	ci left: 6.036732e-01	ci right 6.228608e-01	k: 6133	n:10000
AGTR1   10000 perm   2 sec   (5587 perm/sec)   p_kst 6.133000e-01   p_cons 2.821000e-01   p_joint 7.136000e-01

Outputting figure to mutsig2_images.part000000000005/AGTR1.5_1084_10000_0.6133_0.2821_0.7136.png
                gene_name: AGTR1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 42 percent done.
AGTR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.109888e-01	ci left: 1.047120e-01	ci right 1.171157e-01	k: 1108	n:10000
Cons ci ratio: 7.714643e-02	ci left: 1.972229e-01	ci right 2.131492e-01	k: 2051	n:10000
KS ci ratio: 1.568265e-01	ci left: 5.417192e-02	ci right 6.348715e-02	k: 587	n:10000
AGTR2   10000 perm   2 sec   (5059 perm/sec)   p_kst 5.870000e-02   p_cons 2.051000e-01   p_joint 1.108000e-01

Joint ci ratio: 1.091316e-01	ci left: 5.728364e-02	ci right 6.394481e-02	k: 1211	n:20000
Cons ci ratio: 5.266004e-02	ci left: 2.112047e-01	ci right 2.226777e-01	k: 4338	n:20000
KS ci ratio: 1.105960e-01	ci left: 5.582245e-02	ci right 6.240645e-02	k: 1181	n:20000
AGTR2   20000 perm   4 sec   (4674 perm/sec)   p_kst 5.905000e-02   p_cons 2.169000e-01   p_joint 6.055000e-02

Joint ci ratio: 9.692741e-02	ci left: 4.918871e-02	ci right 5.423189e-02	k: 1550	n:30000
Cons ci ratio: 4.296529e-02	ci left: 2.125118e-01	ci right 2.218763e-01	k: 6515	n:30000
KS ci ratio: 9.134691e-02	ci left: 5.518553e-02	ci right 6.050050e-02	k: 1734	n:30000
AGTR2   30000 perm   7 sec   (4550 perm/sec)   p_kst 5.780000e-02   p_cons 2.171667e-01   p_joint 5.166667e-02

Outputting figure to mutsig2_images.part000000000005/AGTR2.5_1096_30000_0.0578_0.21717_0.051667.png
                gene_name: AGTR2
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.054 

Current progress: 44 percent done.
AGXT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.817710e-02	ci left: 6.499155e-01	ci right 6.685916e-01	k: 6593	n:10000
KS ci ratio: 2.188948e-02	ci left: 7.538312e-01	ci right 7.706157e-01	k: 7623	n:10000
AGXT2   10000 perm   2 sec   (4867 perm/sec)   p_kst 7.623000e-01   p_cons 6.593000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AGXT2.5_1601_10000_0.7623_0.6593_1.png
                gene_name: AGXT2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
AJAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.293583e-01	ci left: 7.863503e-02	ci right 8.960867e-02	k: 840	n:10000
Cons ci ratio: 1.071676e-01	ci left: 1.116413e-01	ci right 1.243822e-01	k: 1179	n:10000
KS ci ratio: 2.095758e-01	ci left: 3.024949e-02	ci right 3.742541e-02	k: 337	n:10000
AJAP1   10000 perm   2 sec   (5634 perm/sec)   p_kst 3.370000e-02   p_cons 1.179000e-01   p_joint 8.400000e-02

Joint ci ratio: 1.223076e-01	ci left: 4.585485e-02	ci right 5.187718e-02	k: 976	n:20000
Cons ci ratio: 7.748406e-02	ci left: 1.090370e-01	ci right 1.178757e-01	k: 2268	n:20000
KS ci ratio: 1.488811e-01	ci left: 3.100104e-02	ci right 3.603577e-02	k: 669	n:20000
AJAP1   20000 perm   4 sec   (4723 perm/sec)   p_kst 3.345000e-02   p_cons 1.134000e-01   p_joint 4.880000e-02

Joint ci ratio: 1.048296e-01	ci left: 4.219418e-02	ci right 4.689454e-02	k: 1335	n:30000
Cons ci ratio: 6.271124e-02	ci left: 1.116080e-01	ci right 1.188667e-01	k: 3456	n:30000
KS ci ratio: 1.224470e-01	ci left: 3.100724e-02	ci right 3.508385e-02	k: 990	n:30000
AJAP1   30000 perm   8 sec   (3929 perm/sec)   p_kst 3.300000e-02   p_cons 1.152000e-01   p_joint 4.450000e-02

Joint ci ratio: 8.303548e-02	ci left: 5.057944e-02	ci right 5.498577e-02	k: 2110	n:40000
Cons ci ratio: 5.274001e-02	ci left: 1.181404e-01	ci right 1.245647e-01	k: 4853	n:40000
KS ci ratio: 1.053574e-01	ci left: 3.168498e-02	ci right 3.523317e-02	k: 1337	n:40000
AJAP1   40000 perm   10 sec   (3992 perm/sec)   p_kst 3.342500e-02   p_cons 1.213250e-01   p_joint 5.275000e-02

Joint ci ratio: 7.413228e-02	ci left: 5.099334e-02	ci right 5.493876e-02	k: 2647	n:50000
Cons ci ratio: 4.710814e-02	ci left: 1.187671e-01	ci right 1.245169e-01	k: 6081	n:50000
KS ci ratio: 9.401688e-02	ci left: 3.201811e-02	ci right 3.519634e-02	k: 1679	n:50000
AJAP1   50000 perm   13 sec   (3950 perm/sec)   p_kst 3.358000e-02   p_cons 1.216200e-01   p_joint 5.294000e-02

Outputting figure to mutsig2_images.part000000000005/AJAP1.5_1256_50000_0.03358_0.12162_0.05294.png
                gene_name: AJAP1
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.055 

Current progress: 47 percent done.
AK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.897850e-02	ci left: 2.972729e-01	ci right 3.154400e-01	k: 3063	n:10000
Cons ci ratio: 5.046744e-02	ci left: 3.666925e-01	ci right 3.857796e-01	k: 3762	n:10000
KS ci ratio: 7.272974e-02	ci left: 2.168465e-01	ci right 2.333139e-01	k: 2250	n:10000
AK5   10000 perm   2 sec   (5668 perm/sec)   p_kst 2.250000e-01   p_cons 3.762000e-01   p_joint 3.063000e-01

Outputting figure to mutsig2_images.part000000000005/AK5.5_1745_10000_0.225_0.3762_0.3063.png
                gene_name: AK5
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 49 percent done.
AGAP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.715456e-02	ci left: 5.168576e-01	ci right 5.365269e-01	k: 5267	n:10000
Cons ci ratio: 3.897529e-02	ci left: 4.929507e-01	ci right 5.126477e-01	k: 5028	n:10000
KS ci ratio: 3.890521e-02	ci left: 4.938506e-01	ci right 5.135473e-01	k: 5037	n:10000
AGAP11   10000 perm   2 sec   (5825 perm/sec)   p_kst 5.037000e-01   p_cons 5.028000e-01   p_joint 5.267000e-01

Outputting figure to mutsig2_images.part000000000005/AGAP11.4_1669_10000_0.5037_0.5028_0.5267.png
                gene_name: AGAP11
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 51 percent done.
AGFG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.994475e-02	ci left: 3.715671e-01	ci right 3.907022e-01	k: 3811	n:10000
Cons ci ratio: 3.991392e-02	ci left: 4.810557e-01	ci right 5.007496e-01	k: 4909	n:10000
KS ci ratio: 5.994992e-02	ci left: 2.904329e-01	ci right 3.084840e-01	k: 2994	n:10000
AGFG2   10000 perm   2 sec   (6110 perm/sec)   p_kst 2.994000e-01   p_cons 4.909000e-01   p_joint 3.811000e-01

Outputting figure to mutsig2_images.part000000000005/AGFG2.4_1494_10000_0.2994_0.4909_0.3811.png
                gene_name: AGFG2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 53 percent done.
AGMAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.417193e-02	ci left: 7.156290e-01	ci right 7.332401e-01	k: 7245	n:10000
Cons ci ratio: 3.995386e-02	ci left: 4.805560e-01	ci right 5.002496e-01	k: 4904	n:10000
KS ci ratio: 3.649665e-02	ci left: 5.257659e-01	ci right 5.454134e-01	k: 5356	n:10000
AGMAT   10000 perm   2 sec   (5083 perm/sec)   p_kst 5.356000e-01   p_cons 4.904000e-01   p_joint 7.245000e-01

Outputting figure to mutsig2_images.part000000000005/AGMAT.4_1087_10000_0.5356_0.4904_0.7245.png
                gene_name: AGMAT
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 54 percent done.
AGPAT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.811442e-02	ci left: 6.509218e-01	ci right 6.695847e-01	k: 6603	n:10000
KS ci ratio: 3.227051e-02	ci left: 5.863057e-01	ci right 6.056384e-01	k: 5960	n:10000
AGPAT9   10000 perm   2 sec   (5142 perm/sec)   p_kst 5.960000e-01   p_cons 6.603000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AGPAT9.4_1353_10000_0.596_0.6603_1.png
                gene_name: AGPAT9
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
AHCYL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.717671e-01	ci left: 4.523448e-02	ci right 5.383036e-02	k: 494	n:10000
Cons ci ratio: 7.944208e-02	ci left: 1.879635e-01	ci right 2.036141e-01	k: 1957	n:10000
KS ci ratio: 1.958891e-01	ci left: 3.471871e-02	ci right 4.235312e-02	k: 384	n:10000
AHCYL1   10000 perm   2 sec   (5046 perm/sec)   p_kst 3.840000e-02   p_cons 1.957000e-01   p_joint 4.940000e-02

Joint ci ratio: 1.269532e-01	ci left: 4.260458e-02	ci right 4.842848e-02	k: 909	n:20000
Cons ci ratio: 5.665190e-02	ci left: 1.876493e-01	ci right 1.986400e-01	k: 3862	n:20000
KS ci ratio: 1.391770e-01	ci left: 3.548919e-02	ci right 4.084615e-02	k: 762	n:20000
AHCYL1   20000 perm   4 sec   (4636 perm/sec)   p_kst 3.810000e-02   p_cons 1.931000e-01   p_joint 4.545000e-02

Joint ci ratio: 1.045026e-01	ci left: 4.245416e-02	ci right 4.716783e-02	k: 1343	n:30000
Cons ci ratio: 4.606180e-02	ci left: 1.899680e-01	ci right 1.989579e-01	k: 5833	n:30000
KS ci ratio: 1.147638e-01	ci left: 3.528116e-02	ci right 3.960901e-02	k: 1122	n:30000
AHCYL1   30000 perm   6 sec   (4619 perm/sec)   p_kst 3.740000e-02   p_cons 1.944333e-01   p_joint 4.476667e-02

Joint ci ratio: 8.643903e-02	ci left: 4.678240e-02	ci right 5.103339e-02	k: 1955	n:40000
Cons ci ratio: 3.987698e-02	ci left: 1.906805e-01	ci right 1.984639e-01	k: 7782	n:40000
KS ci ratio: 9.864961e-02	ci left: 3.609860e-02	ci right 3.986885e-02	k: 1518	n:40000
AHCYL1   40000 perm   9 sec   (4451 perm/sec)   p_kst 3.795000e-02   p_cons 1.945500e-01   p_joint 4.887500e-02

Outputting figure to mutsig2_images.part000000000005/AHCYL1.4_1661_40000_0.03795_0.19455_0.048875.png
                gene_name: AHCYL1
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.051 

Current progress: 58 percent done.
AHDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.829633e-02	ci left: 6.480036e-01	ci right 6.667046e-01	k: 6574	n:10000
Cons ci ratio: 1.456751e-02	ci left: 8.721407e-01	ci right 8.850379e-01	k: 8787	n:10000
KS ci ratio: 3.576934e-02	ci left: 5.357789e-01	ci right 5.553945e-01	k: 5456	n:10000
AHDC1   10000 perm   2 sec   (4632 perm/sec)   p_kst 5.456000e-01   p_cons 8.787000e-01   p_joint 6.574000e-01

Outputting figure to mutsig2_images.part000000000005/AHDC1.4_4816_10000_0.5456_0.8787_0.6574.png
                gene_name: AHDC1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 60 percent done.
AHI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.841319e-02	ci left: 3.862964e-01	ci right 4.055643e-01	k: 3959	n:10000
KS ci ratio: 1.027334e-02	ci left: 9.308177e-01	ci right 9.405266e-01	k: 9358	n:10000
AHI1   10000 perm   2 sec   (4891 perm/sec)   p_kst 9.358000e-01   p_cons 3.959000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AHI1.4_3752_10000_0.9358_0.3959_1.png
                gene_name: AHI1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
AICDA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.103792e-02	ci left: 1.492334e-01	ci right 1.635673e-01	k: 1563	n:10000
Cons ci ratio: 1.844739e-01	ci left: 3.920326e-02	ci right 4.726556e-02	k: 431	n:10000
KS ci ratio: 1.245212e-02	ci left: 9.025767e-01	ci right 9.139842e-01	k: 9084	n:10000
AICDA   10000 perm   2 sec   (6128 perm/sec)   p_kst 9.084000e-01   p_cons 4.310000e-02   p_joint 1.563000e-01

Joint ci ratio: 5.784248e-02	ci left: 1.813204e-01	ci right 1.921709e-01	k: 3734	n:20000
Cons ci ratio: 1.238480e-01	ci left: 4.473862e-02	ci right 5.069376e-02	k: 953	n:20000
KS ci ratio: 9.016006e-03	ci left: 9.001899e-01	ci right 9.083921e-01	k: 18087	n:20000
AICDA   20000 perm   4 sec   (5638 perm/sec)   p_kst 9.043500e-01   p_cons 4.765000e-02   p_joint 1.867000e-01

Joint ci ratio: 5.074049e-02	ci left: 1.617064e-01	ci right 1.701584e-01	k: 4977	n:30000
Cons ci ratio: 1.011965e-01	ci left: 4.521789e-02	ci right 5.007020e-02	k: 1428	n:30000
KS ci ratio: 7.273627e-03	ci left: 9.030479e-01	ci right 9.096732e-01	k: 27192	n:30000
AICDA   30000 perm   7 sec   (4557 perm/sec)   p_kst 9.064000e-01   p_cons 4.760000e-02   p_joint 1.659000e-01

Joint ci ratio: 4.595620e-02	ci left: 1.503517e-01	ci right 1.574487e-01	k: 6155	n:40000
Cons ci ratio: 8.979630e-02	ci left: 4.342937e-02	ci right 4.753694e-02	k: 1818	n:40000
KS ci ratio: 6.246878e-03	ci left: 9.049226e-01	ci right 9.106180e-01	k: 36312	n:40000
AICDA   40000 perm   9 sec   (4483 perm/sec)   p_kst 9.078000e-01   p_cons 4.545000e-02   p_joint 1.538750e-01

Outputting figure to mutsig2_images.part000000000005/AICDA.4_617_40000_0.9078_0.04545_0.15388.png
                gene_name: AICDA
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 63 percent done.
AKAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.559642e-02	ci left: 2.038267e-01	ci right 2.199415e-01	k: 2118	n:10000
Cons ci ratio: 3.008344e-02	ci left: 6.197470e-01	ci right 6.387777e-01	k: 6293	n:10000
KS ci ratio: 9.647308e-02	ci left: 1.348219e-01	ci right 1.485876e-01	k: 1416	n:10000
AKAP4   10000 perm   2 sec   (4815 perm/sec)   p_kst 1.416000e-01   p_cons 6.293000e-01   p_joint 2.118000e-01

Outputting figure to mutsig2_images.part000000000005/AKAP4.4_2589_10000_0.1416_0.6293_0.2118.png
                gene_name: AKAP4
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 65 percent done.
AGAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.130045e-01	ci left: 1.012990e-01	ci right 1.135307e-01	k: 1073	n:10000
Cons ci ratio: 8.360851e-02	ci left: 1.726124e-01	ci right 1.877744e-01	k: 1801	n:10000
KS ci ratio: 8.043957e-02	ci left: 1.841239e-01	ci right 1.996560e-01	k: 1918	n:10000
AGAP3   10000 perm   3 sec   (3287 perm/sec)   p_kst 1.918000e-01   p_cons 1.801000e-01   p_joint 1.073000e-01

Joint ci ratio: 7.173704e-02	ci left: 1.252205e-01	ci right 1.345874e-01	k: 2597	n:20000
Cons ci ratio: 5.601473e-02	ci left: 1.911609e-01	ci right 2.022274e-01	k: 3933	n:20000
KS ci ratio: 5.556674e-02	ci left: 1.936837e-01	ci right 2.048038e-01	k: 3984	n:20000
AGAP3   20000 perm   5 sec   (3708 perm/sec)   p_kst 1.992000e-01   p_cons 1.966500e-01   p_joint 1.298500e-01

Outputting figure to mutsig2_images.part000000000005/AGAP3.3_2875_20000_0.1992_0.19665_0.12985.png
                gene_name: AGAP3
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 67 percent done.
AGBL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.001900e-02	ci left: 6.207519e-01	ci right 6.397721e-01	k: 6303	n:10000
KS ci ratio: 1.956399e-02	ci left: 7.926319e-01	ci right 8.083926e-01	k: 8006	n:10000
AGBL5   10000 perm   2 sec   (5183 perm/sec)   p_kst 8.006000e-01   p_cons 6.303000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AGBL5.3_2782_10000_0.8006_0.6303_1.png
                gene_name: AGBL5
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
AGFG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.088296e-02	ci left: 2.258292e-01	ci right 2.425259e-01	k: 2341	n:10000
Cons ci ratio: 3.282959e-02	ci left: 5.779777e-01	ci right 5.973712e-01	k: 5877	n:10000
KS ci ratio: 9.025256e-02	ci left: 1.514904e-01	ci right 1.659090e-01	k: 1586	n:10000
AGFG1   10000 perm   2 sec   (5102 perm/sec)   p_kst 1.586000e-01   p_cons 5.877000e-01   p_joint 2.341000e-01

Outputting figure to mutsig2_images.part000000000005/AGFG1.3_1817_10000_0.1586_0.5877_0.2341.png
                gene_name: AGFG1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 70 percent done.
AGK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.350447e-02	ci left: 2.670569e-01	ci right 2.846738e-01	k: 2758	n:10000
Cons ci ratio: 3.092077e-02	ci left: 6.067866e-01	ci right 6.259455e-01	k: 6164	n:10000
KS ci ratio: 1.036624e-01	ci left: 1.185779e-01	ci right 1.316413e-01	k: 1250	n:10000
AGK   10000 perm   2 sec   (5657 perm/sec)   p_kst 1.250000e-01   p_cons 6.164000e-01   p_joint 2.758000e-01

Joint ci ratio: 4.364641e-02	ci left: 2.810847e-01	ci right 2.936772e-01	k: 5747	n:20000
Cons ci ratio: 2.202288e-02	ci left: 6.062087e-01	ci right 6.197584e-01	k: 12260	n:20000
KS ci ratio: 7.442799e-02	ci left: 1.172484e-01	ci right 1.263619e-01	k: 2435	n:20000
AGK   20000 perm   4 sec   (5179 perm/sec)   p_kst 1.217500e-01   p_cons 6.130000e-01   p_joint 2.873500e-01

Outputting figure to mutsig2_images.part000000000005/AGK.3_1329_20000_0.12175_0.613_0.28735.png
                gene_name: AGK
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 72 percent done.
AGPAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.072890e-02	ci left: 4.709642e-01	ci right 4.906470e-01	k: 4808	n:10000
Cons ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
KS ci ratio: 3.404318e-02	ci left: 5.602275e-01	ci right 5.797317e-01	k: 5700	n:10000
AGPAT3   10000 perm   2 sec   (4100 perm/sec)   p_kst 5.700000e-01   p_cons 1.422000e-01   p_joint 4.808000e-01

Outputting figure to mutsig2_images.part000000000005/AGPAT3.3_1163_10000_0.57_0.1422_0.4808.png
                gene_name: AGPAT3
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 74 percent done.
AGPAT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.112175e-02	ci left: 7.666861e-01	ci right 7.831535e-01	k: 7750	n:10000
KS ci ratio: 2.130935e-02	ci left: 7.635473e-01	ci right 7.800941e-01	k: 7719	n:10000
AGPAT5   10000 perm   2 sec   (5830 perm/sec)   p_kst 7.719000e-01   p_cons 7.750000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AGPAT5.3_1127_10000_0.7719_0.775_1.png
                gene_name: AGPAT5
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
AGPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.781958e-02	ci left: 3.057022e-01	ci right 3.240057e-01	k: 3148	n:10000
Cons ci ratio: 3.402236e-02	ci left: 5.605282e-01	ci right 5.800308e-01	k: 5703	n:10000
KS ci ratio: 7.964445e-02	ci left: 1.871758e-01	ci right 2.028023e-01	k: 1949	n:10000
AGPS   10000 perm   2 sec   (4906 perm/sec)   p_kst 1.949000e-01   p_cons 5.703000e-01   p_joint 3.148000e-01

Outputting figure to mutsig2_images.part000000000005/AGPS.3_2057_10000_0.1949_0.5703_0.3148.png
                gene_name: AGPS
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 77 percent done.
AHCY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.297280e-02	ci left: 4.443061e-01	ci right 4.639206e-01	k: 4541	n:10000
Cons ci ratio: 6.192151e-02	ci left: 2.771565e-01	ci right 2.949683e-01	k: 2860	n:10000
KS ci ratio: 7.688723e-02	ci left: 1.983069e-01	ci right 2.142646e-01	k: 2062	n:10000
AHCY   10000 perm   2 sec   (5103 perm/sec)   p_kst 2.062000e-01   p_cons 2.860000e-01   p_joint 4.541000e-01

Outputting figure to mutsig2_images.part000000000005/AHCY.3_1339_10000_0.2062_0.286_0.4541.png
                gene_name: AHCY
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 79 percent done.
AIMP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.961542e-01	ci left: 3.462345e-02	ci right 4.224845e-02	k: 383	n:10000
Cons ci ratio: 8.508072e-02	ci left: 1.675982e-01	ci right 1.825915e-01	k: 1750	n:10000
KS ci ratio: 2.102203e-01	ci left: 3.005970e-02	ci right 3.721534e-02	k: 335	n:10000
AIMP2   10000 perm   2 sec   (4546 perm/sec)   p_kst 3.350000e-02   p_cons 1.750000e-01   p_joint 3.830000e-02

Joint ci ratio: 8.210895e-02	ci left: 9.808407e-02	ci right 1.065320e-01	k: 2045	n:20000
Cons ci ratio: 6.020370e-02	ci left: 1.696083e-01	ci right 1.801863e-01	k: 3497	n:20000
KS ci ratio: 1.469628e-01	ci left: 3.182056e-02	ci right 3.691598e-02	k: 686	n:20000
AIMP2   20000 perm   5 sec   (4419 perm/sec)   p_kst 3.430000e-02   p_cons 1.748500e-01   p_joint 1.022500e-01

Joint ci ratio: 8.416313e-02	ci left: 6.458829e-02	ci right 7.029583e-02	k: 2022	n:30000
Cons ci ratio: 4.932735e-02	ci left: 1.695931e-01	ci right 1.782035e-01	k: 5216	n:30000
KS ci ratio: 1.211880e-01	ci left: 3.165422e-02	ci right 3.577006e-02	k: 1010	n:30000
AIMP2   30000 perm   8 sec   (3732 perm/sec)   p_kst 3.366667e-02   p_cons 1.738667e-01   p_joint 6.740000e-02

Joint ci ratio: 7.581266e-02	ci left: 6.026994e-02	ci right 6.504379e-02	k: 2505	n:40000
Cons ci ratio: 4.285688e-02	ci left: 1.692550e-01	ci right 1.766925e-01	k: 6918	n:40000
KS ci ratio: 1.058495e-01	ci left: 3.139265e-02	ci right 3.492554e-02	k: 1325	n:40000
AIMP2   40000 perm   11 sec   (3686 perm/sec)   p_kst 3.312500e-02   p_cons 1.729500e-01   p_joint 6.262500e-02

Joint ci ratio: 7.573108e-02	ci left: 4.893066e-02	ci right 5.280170e-02	k: 2542	n:50000
Cons ci ratio: 3.832371e-02	ci left: 1.697135e-01	ci right 1.763645e-01	k: 8651	n:50000
KS ci ratio: 9.451282e-02	ci left: 3.168587e-02	ci right 3.484862e-02	k: 1662	n:50000
AIMP2   50000 perm   13 sec   (3746 perm/sec)   p_kst 3.324000e-02   p_cons 1.730200e-01   p_joint 5.084000e-02

Outputting figure to mutsig2_images.part000000000005/AIMP2.3_979_50000_0.03324_0.17302_0.05084.png
                gene_name: AIMP2
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.053 

Current progress: 81 percent done.
AKAP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.483577e-03	ci left: 9.946724e-01	ci right 9.972253e-01	k: 9961	n:10000
KS ci ratio: 2.117017e-02	ci left: 7.658760e-01	ci right 7.823640e-01	k: 7742	n:10000
AKAP10   10000 perm   2 sec   (5488 perm/sec)   p_kst 7.742000e-01   p_cons 9.961000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AKAP10.3_2049_10000_0.7742_0.9961_1.png
                gene_name: AKAP10
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
AKAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.285046e-02	ci left: 3.454159e-01	ci right 3.642687e-01	k: 3548	n:10000
Cons ci ratio: 4.237972e-02	ci left: 4.511926e-01	ci right 4.708301e-01	k: 4610	n:10000
KS ci ratio: 6.550165e-02	ci left: 2.549845e-01	ci right 2.723533e-01	k: 2636	n:10000
AKAP5   10000 perm   2 sec   (5471 perm/sec)   p_kst 2.636000e-01   p_cons 4.610000e-01   p_joint 3.548000e-01

Outputting figure to mutsig2_images.part000000000005/AKAP5.3_1288_10000_0.2636_0.461_0.3548.png
                gene_name: AKAP5
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 84 percent done.
AFP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.212799e-02	ci left: 9.069966e-01	ci right 9.181617e-01	k: 9127	n:10000
KS ci ratio: 2.190155e-02	ci left: 7.536289e-01	ci right 7.704182e-01	k: 7621	n:10000
AFP   10000 perm   2 sec   (6237 perm/sec)   p_kst 7.621000e-01   p_cons 9.127000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AFP.2_1886_10000_0.7621_0.9127_1.png
                gene_name: AFP
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
AGBL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.740949e-02	ci left: 6.622964e-01	ci right 6.808035e-01	k: 6716	n:10000
Cons ci ratio: 7.974606e-02	ci left: 1.867820e-01	ci right 2.023963e-01	k: 1945	n:10000
KS ci ratio: 8.798932e-02	ci left: 1.582644e-01	ci right 1.729310e-01	k: 1655	n:10000
AGBL4   10000 perm   2 sec   (6391 perm/sec)   p_kst 1.655000e-01   p_cons 1.945000e-01   p_joint 6.716000e-01

Outputting figure to mutsig2_images.part000000000005/AGBL4.2_1568_10000_0.1655_0.1945_0.6716.png
                gene_name: AGBL4
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 88 percent done.
AGGF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.194462e-02	ci left: 9.094652e-01	ci right 9.204916e-01	k: 9151	n:10000
KS ci ratio: 1.263811e-02	ci left: 9.000087e-01	ci right 9.115537e-01	k: 9059	n:10000
AGGF1   10000 perm   2 sec   (5590 perm/sec)   p_kst 9.059000e-01   p_cons 9.151000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AGGF1.2_2201_10000_0.9059_0.9151_1.png
                gene_name: AGGF1
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
AGPAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.094410e-01	ci left: 1.074437e-01	ci right 1.199823e-01	k: 1136	n:10000
Cons ci ratio: 2.249902e-02	ci left: 7.436154e-01	ci right 7.606374e-01	k: 7522	n:10000
KS ci ratio: 1.264263e-01	ci left: 8.212963e-02	ci right 9.331191e-02	k: 876	n:10000
AGPAT1   10000 perm   2 sec   (5902 perm/sec)   p_kst 8.760000e-02   p_cons 7.522000e-01   p_joint 1.136000e-01

Joint ci ratio: 3.057962e-02	ci left: 4.440864e-01	ci right 4.579279e-01	k: 9020	n:20000
Cons ci ratio: 1.580479e-02	ci left: 7.486248e-01	ci right 7.606011e-01	k: 15093	n:20000
KS ci ratio: 8.789646e-02	ci left: 8.646061e-02	ci right 9.445892e-02	k: 1808	n:20000
AGPAT1   20000 perm   4 sec   (5354 perm/sec)   p_kst 9.040000e-02   p_cons 7.546500e-01   p_joint 4.510000e-01

Outputting figure to mutsig2_images.part000000000005/AGPAT1.2_876_20000_0.0904_0.75465_0.451.png
                gene_name: AGPAT1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 91 percent done.
AGPAT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.613873e-02	ci left: 5.306718e-01	ci right 5.503046e-01	k: 5405	n:10000
Cons ci ratio: 1.090088e-01	ci left: 1.082244e-01	ci right 1.208011e-01	k: 1144	n:10000
KS ci ratio: 3.755887e-02	ci left: 5.114541e-01	ci right 5.311335e-01	k: 5213	n:10000
AGPAT6   10000 perm   1 sec   (6751 perm/sec)   p_kst 5.213000e-01   p_cons 1.144000e-01   p_joint 5.405000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.646149e-02	ci left: 1.116914e-01	ci right 1.206206e-01	k: 2322	n:20000
KS ci ratio: 2.636379e-02	ci left: 5.180509e-01	ci right 5.319418e-01	k: 10500	n:20000
AGPAT6   20000 perm   3 sec   (5958 perm/sec)   p_kst 5.250000e-01   p_cons 1.161000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AGPAT6.2_1419_20000_0.525_0.1161_1.png
                gene_name: AGPAT6
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
AIFM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.025848e-02	ci left: 1.848130e-01	ci right 2.003665e-01	k: 1925	n:10000
Cons ci ratio: 4.372585e-02	ci left: 4.357256e-01	ci right 4.553061e-01	k: 4455	n:10000
KS ci ratio: 1.117840e-01	ci left: 1.033465e-01	ci right 1.156820e-01	k: 1094	n:10000
AIFM1   10000 perm   2 sec   (6121 perm/sec)   p_kst 1.094000e-01   p_cons 4.455000e-01   p_joint 1.925000e-01

Joint ci ratio: 1.113574e-02	ci left: 8.561788e-01	ci right 8.658160e-01	k: 17221	n:20000
Cons ci ratio: 3.088399e-02	ci left: 4.391941e-01	ci right 4.530216e-01	k: 8922	n:20000
KS ci ratio: 7.926844e-02	ci left: 1.046148e-01	ci right 1.132993e-01	k: 2178	n:20000
AIFM1   20000 perm   4 sec   (5379 perm/sec)   p_kst 1.089000e-01   p_cons 4.461000e-01   p_joint 8.610500e-01

Outputting figure to mutsig2_images.part000000000005/AIFM1.2_2053_20000_0.1089_0.4461_0.86105.png
                gene_name: AIFM1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 95 percent done.
AIFM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.554179e-03	ci left: 9.393127e-01	ci right 9.484265e-01	k: 9440	n:10000
Cons ci ratio: 3.283636e-02	ci left: 5.778774e-01	ci right 5.972716e-01	k: 5876	n:10000
KS ci ratio: 9.367929e-02	ci left: 1.419757e-01	ci right 1.560294e-01	k: 1489	n:10000
AIFM2   10000 perm   1 sec   (6891 perm/sec)   p_kst 1.489000e-01   p_cons 5.876000e-01   p_joint 9.440000e-01

Outputting figure to mutsig2_images.part000000000005/AIFM2.2_1154_10000_0.1489_0.5876_0.944.png
                gene_name: AIFM2
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 96 percent done.
AIFM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.879412e-02	ci left: 6.400560e-01	ci right 6.588569e-01	k: 6495	n:10000
KS ci ratio: 4.309433e-02	ci left: 4.429091e-01	ci right 4.625185e-01	k: 4527	n:10000
AIFM3   10000 perm   2 sec   (5422 perm/sec)   p_kst 4.527000e-01   p_cons 6.495000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AIFM3.2_1916_10000_0.4527_0.6495_1.png
                gene_name: AIFM3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
AIPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.727913e-02	ci left: 6.644110e-01	ci right 6.828878e-01	k: 6737	n:10000
KS ci ratio: 7.125468e-03	ci left: 9.644665e-01	ci right 9.714574e-01	k: 9681	n:10000
AIPL1   10000 perm   2 sec   (6404 perm/sec)   p_kst 9.681000e-01   p_cons 6.737000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000005/AIPL1.2_1179_10000_0.9681_0.6737_1.png
                gene_name: AIPL1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000005
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 5 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1431>
Subject: Job 9893803: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1431>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000006> was used as the working directory.
Started at Fri Oct  5 23:52:32 2012
Results reported at Sat Oct  6 00:10:06 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000006.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000006.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 6  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000006.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1111.36 sec.
    Max Memory :      3676 MB
    Max Swap   :      5939 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
6
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 6
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 6: processing genes 452 - 541
Calculating significance of each gene.
Using projection method.
452	AKAP7	3.247359e-01
453	AKAP8	7.556880e-01
454	AKAP8L	9.555331e-01
455	AKAP9	1.165897e-01
456	AKD1	7.925664e-01
457	AKIRIN1	1
In gene AKIRIN2 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 430     n = 1	mu =   8.55e-07
458	AKIRIN2	7.087512e-03
459	AKNA	4.697268e-01
460	AKNAD1	7.992994e-01
461	AKR1A1	1
462	AKR1B1	4.291115e-01
463	AKR1B10	1
464	AKR1B15	9.227659e-02
465	AKR1C1	1
466	AKR1C2	1.659982e-02
467	AKR1C3	3.174699e-01
468	AKR1C4	9.929359e-02
469	AKR1D1	4.660264e-01
470	AKR1E2	6.004108e-01
471	AKR7A2	1
472	AKR7A3	1
473	AKR7L	1
474	AKT1	7.615257e-01
475	AKT1S1	1.309438e-02
476	AKT2	1.894828e-01
477	AKT3	9.148493e-01
478	AKTIP	7.305041e-01
479	ALAD	8.057496e-01
480	ALAS1	3.237124e-01
481	ALAS2	1.226481e-01
482	ALB	6.042657e-01
483	ALCAM	6.546110e-01
484	ALDH16A1	8.910649e-01
485	ALDH18A1	4.080243e-01
486	ALDH1A1	4.045367e-01
487	ALDH1A2	6.013859e-02
488	ALDH1A3	1.756255e-01
489	ALDH1B1	2.431820e-01
490	ALDH1L1	7.320654e-01
491	ALDH1L2	6.488582e-01
492	ALDH2	4.411911e-01
493	ALDH3A1	8.156842e-01
494	ALDH3A2	3.687850e-01
495	ALDH3B1	3.015113e-01
496	ALDH3B2	6.652590e-01
497	ALDH4A1	7.184940e-01
498	ALDH5A1	9.069570e-02
499	ALDH6A1	2.023723e-01
500	ALDH7A1	5.190805e-01
501	ALDH8A1	2.059920e-01
502	ALDH9A1	9.354306e-01
503	ALDOA	8.144071e-01
504	ALDOB	2.642703e-02
505	ALDOC	2.094720e-01
506	ALG1	7.121374e-01
507	ALG10	6.724315e-01
508	ALG10B	3.683145e-02
509	ALG11	7.053365e-01
510	ALG12	6.214637e-01
511	ALG13	9.857041e-01
512	ALG14	6.178063e-01
513	ALG1L	6.171237e-01
514	ALG2	3.555432e-01
515	ALG3	8.517699e-01
516	ALG5	3.968675e-01
517	ALG6	2.766013e-01
518	ALG8	3.566072e-02
519	ALG9	6.807940e-01
In gene ALK the following bins exceed PROBCAP:
    COAD-AA-3562	categ 6	N = 4656    n = 1	mu =   1.38e-07
520	ALK	7.146830e-02
521	ALKBH1	1
522	ALKBH2	6.326413e-01
523	ALKBH3	1
524	ALKBH4	1
525	ALKBH5	7.093242e-01
526	ALKBH6	4.515676e-01
527	ALKBH7	5.433964e-01
528	ALKBH8	2.000605e-01
529	ALLC	1.868251e-01
530	ALMS1	9.441070e-01
531	ALOX12	5.792533e-01
532	ALOX12B	8.531399e-01
533	ALOX15	1
534	ALOX15B	2.543114e-01
535	ALOX5	6.753449e-01
536	ALOX5AP	6.059215e-01
537	ALOXE3	6.337563e-01
538	ALPI	7.849369e-01
539	ALPK1	3.114553e-02
540	ALPK2	7.348994e-01
541	ALPK3	9.415713e-01
Done

Running MutSig 2:
Scatter job 6: processing genes 452 - 541
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
AKAP9
Processing conservation and coverage...
83% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.512457e-02	ci left: 6.997857e-01	ci right 7.176926e-01	k: 7088	n:10000
Cons ci ratio: 5.283892e-02	ci left: 3.455153e-01	ci right 3.643693e-01	k: 3549	n:10000
KS ci ratio: 3.441962e-02	ci left: 5.548147e-01	ci right 5.743477e-01	k: 5646	n:10000
AKAP9   10000 perm   5 sec   (1825 perm/sec)   p_kst 5.646000e-01   p_cons 3.549000e-01   p_joint 7.088000e-01

Outputting figure to mutsig2_images.part000000000006/AKAP9.26_11924_10000_0.5646_0.3549_0.7088.png
                gene_name: AKAP9
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 2 percent done.
ALMS1
Processing conservation and coverage...
79% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.388181e-02	ci left: 3.366725e-01	ci right 3.554172e-01	k: 3460	n:10000
Cons ci ratio: 1.249484e-01	ci left: 8.397514e-02	ci right 9.526525e-02	k: 895	n:10000
KS ci ratio: 1.519581e-02	ci left: 8.626380e-01	ci right 8.759461e-01	k: 8694	n:10000
ALMS1   10000 perm   5 sec   (2035 perm/sec)   p_kst 8.694000e-01   p_cons 8.950000e-02   p_joint 3.460000e-01

Joint ci ratio: 3.504810e-02	ci left: 3.779992e-01	ci right 3.915343e-01	k: 7695	n:20000
Cons ci ratio: 9.661324e-02	ci left: 7.236421e-02	ci right 7.975961e-02	k: 1520	n:20000
KS ci ratio: 1.078901e-02	ci left: 8.636870e-01	ci right 8.731056e-01	k: 17369	n:20000
ALMS1   20000 perm   10 sec   (1983 perm/sec)   p_kst 8.684500e-01   p_cons 7.600000e-02   p_joint 3.847500e-01

Outputting figure to mutsig2_images.part000000000006/ALMS1.19_12596_20000_0.86845_0.076_0.38475.png
                gene_name: ALMS1
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 3 percent done.
ALK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.666552e-01	ci left: 9.230735e-03	ci right 1.346114e-02	k: 112	n:10000
Cons ci ratio: 6.017928e-02	ci left: 2.888472e-01	ci right 3.068707e-01	k: 2978	n:10000
KS ci ratio: 6.264461e-01	ci left: 2.690467e-03	ci right 5.212103e-03	k: 38	n:10000
ALK   10000 perm   3 sec   (3158 perm/sec)   p_kst 3.800000e-03   p_cons 2.978000e-01   p_joint 1.120000e-02

Joint ci ratio: 1.957807e-01	ci left: 1.772392e-02	ci right 2.161749e-02	k: 392	n:20000
Cons ci ratio: 4.190127e-02	ci left: 2.979768e-01	ci right 3.107801e-01	k: 6087	n:20000
KS ci ratio: 4.548356e-01	ci left: 2.862076e-03	ci right 4.587170e-03	k: 73	n:20000
ALK   20000 perm   6 sec   (3099 perm/sec)   p_kst 3.650000e-03   p_cons 3.043500e-01   p_joint 1.960000e-02

Joint ci ratio: 1.881208e-01	ci left: 1.292349e-02	ci right 1.563844e-02	k: 427	n:30000
Cons ci ratio: 3.440443e-02	ci left: 2.968073e-01	ci right 3.072311e-01	k: 9060	n:30000
KS ci ratio: 3.855791e-01	ci left: 2.773118e-03	ci right 4.125866e-03	k: 102	n:30000
ALK   30000 perm   10 sec   (3054 perm/sec)   p_kst 3.400000e-03   p_cons 3.020000e-01   p_joint 1.423333e-02

Joint ci ratio: 1.982961e-01	ci left: 8.715205e-03	ci right 1.065697e-02	k: 386	n:40000
Cons ci ratio: 2.978335e-02	ci left: 2.976769e-01	ci right 3.067018e-01	k: 12087	n:40000
KS ci ratio: 3.406245e-01	ci left: 2.738922e-03	ci right 3.885061e-03	k: 131	n:40000
ALK   40000 perm   13 sec   (3019 perm/sec)   p_kst 3.275000e-03   p_cons 3.021750e-01   p_joint 9.650000e-03

Joint ci ratio: 1.509954e-01	ci left: 1.229497e-02	ci right 1.432212e-02	k: 664	n:50000
Cons ci ratio: 2.651827e-02	ci left: 3.000692e-01	ci right 3.081535e-01	k: 15205	n:50000
KS ci ratio: 2.908406e-01	ci left: 3.094032e-03	ci right 4.164873e-03	k: 180	n:50000
ALK   50000 perm   17 sec   (2986 perm/sec)   p_kst 3.600000e-03   p_cons 3.041000e-01   p_joint 1.328000e-02

Joint ci ratio: 1.981049e-01	ci left: 5.840935e-03	ci right 7.140827e-03	k: 388	n:60000
Cons ci ratio: 2.411675e-02	ci left: 3.020148e-01	ci right 3.094040e-01	k: 18342	n:60000
KS ci ratio: 2.620122e-01	ci left: 3.229993e-03	ci right 4.218966e-03	k: 222	n:60000
ALK   60000 perm   21 sec   (2813 perm/sec)   p_kst 3.700000e-03   p_cons 3.057000e-01   p_joint 6.466667e-03

Joint ci ratio: 1.913892e-01	ci left: 5.386891e-03	ci right 6.540353e-03	k: 416	n:70000
Cons ci ratio: 2.228065e-02	ci left: 3.031853e-01	ci right 3.100308e-01	k: 21462	n:70000
KS ci ratio: 2.460008e-01	ci left: 3.169864e-03	ci right 4.072053e-03	k: 252	n:70000
ALK   70000 perm   26 sec   (2659 perm/sec)   p_kst 3.600000e-03   p_cons 3.066000e-01   p_joint 5.942857e-03

Joint ci ratio: 2.035946e-01	ci left: 4.142890e-03	ci right 5.093584e-03	k: 368	n:80000
Cons ci ratio: 2.087855e-02	ci left: 3.026579e-01	ci right 3.090561e-01	k: 24468	n:80000
KS ci ratio: 2.247698e-01	ci left: 3.361879e-03	ci right 4.224721e-03	k: 302	n:80000
ALK   80000 perm   31 sec   (2607 perm/sec)   p_kst 3.775000e-03   p_cons 3.058500e-01   p_joint 4.600000e-03

Joint ci ratio: 1.531980e-01	ci left: 6.668700e-03	ci right 7.785637e-03	k: 649	n:90000
Cons ci ratio: 1.965241e-02	ci left: 3.035330e-01	ci right 3.095684e-01	k: 27589	n:90000
KS ci ratio: 2.128180e-01	ci left: 3.355926e-03	ci right 4.165466e-03	k: 337	n:90000
ALK   90000 perm   35 sec   (2551 perm/sec)   p_kst 3.744444e-03   p_cons 3.065444e-01   p_joint 7.211111e-03

Joint ci ratio: 1.542119e-01	ci left: 5.924729e-03	ci right 6.924223e-03	k: 641	n:100000
Cons ci ratio: 1.862663e-02	ci left: 3.040820e-01	ci right 3.098092e-01	k: 30694	n:100000
KS ci ratio: 2.020470e-01	ci left: 3.371126e-03	ci right 4.138100e-03	k: 374	n:100000
ALK   100000 perm   40 sec   (2494 perm/sec)   p_kst 3.740000e-03   p_cons 3.069400e-01   p_joint 6.410000e-03

Joint ci ratio: 1.465349e-01	ci left: 5.989813e-03	ci right 6.945579e-03	k: 710	n:110000
Cons ci ratio: 1.775240e-02	ci left: 3.043927e-01	ci right 3.098538e-01	k: 33783	n:110000
KS ci ratio: 1.913680e-01	ci left: 3.436339e-03	ci right 4.172022e-03	k: 417	n:110000
ALK   110000 perm   46 sec   (2388 perm/sec)   p_kst 3.790909e-03   p_cons 3.071182e-01   p_joint 6.454545e-03

Joint ci ratio: 1.268113e-01	ci left: 7.398786e-03	ci right 8.408547e-03	k: 947	n:120000
Cons ci ratio: 1.700404e-02	ci left: 3.043243e-01	ci right 3.095517e-01	k: 36832	n:120000
KS ci ratio: 1.832209e-01	ci left: 3.451804e-03	ci right 4.155844e-03	k: 455	n:120000
ALK   120000 perm   51 sec   (2350 perm/sec)   p_kst 3.791667e-03   p_cons 3.069333e-01   p_joint 7.891667e-03

Joint ci ratio: 1.313196e-01	ci left: 6.360449e-03	ci right 7.261762e-03	k: 884	n:130000
Cons ci ratio: 1.632822e-02	ci left: 3.046543e-01	ci right 3.096774e-01	k: 39931	n:130000
KS ci ratio: 1.707364e-01	ci left: 3.693602e-03	ci right 4.390346e-03	k: 524	n:130000
ALK   130000 perm   56 sec   (2326 perm/sec)   p_kst 4.030769e-03   p_cons 3.071615e-01   p_joint 6.800000e-03

Joint ci ratio: 1.170848e-01	ci left: 7.477577e-03	ci right 8.414403e-03	k: 1111	n:140000
Cons ci ratio: 1.574714e-02	ci left: 3.043990e-01	ci right 3.092376e-01	k: 42954	n:140000
KS ci ratio: 1.659140e-01	ci left: 3.641866e-03	ci right 4.307508e-03	k: 555	n:140000
ALK   140000 perm   60 sec   (2326 perm/sec)   p_kst 3.964286e-03   p_cons 3.068143e-01   p_joint 7.935714e-03

Joint ci ratio: 1.186301e-01	ci left: 6.797766e-03	ci right 7.661446e-03	k: 1083	n:150000
Cons ci ratio: 1.617096e-02	ci left: 2.791984e-01	ci right 2.837567e-01	k: 42221	n:150000
KS ci ratio: 1.614783e-01	ci left: 3.597269e-03	ci right 4.235476e-03	k: 586	n:150000
ALK   150000 perm   65 sec   (2323 perm/sec)   p_kst 3.906667e-03   p_cons 2.814733e-01   p_joint 7.220000e-03

Joint ci ratio: 1.154310e-01	ci left: 6.742984e-03	ci right 7.575025e-03	k: 1144	n:160000
Cons ci ratio: 1.565306e-02	ci left: 2.793845e-01	ci right 2.837984e-01	k: 45054	n:160000
KS ci ratio: 1.559926e-01	ci left: 3.624518e-03	ci right 4.243671e-03	k: 628	n:160000
ALK   160000 perm   69 sec   (2319 perm/sec)   p_kst 3.925000e-03   p_cons 2.815875e-01   p_joint 7.150000e-03

Joint ci ratio: 1.268925e-01	ci left: 5.227994e-03	ci right 5.941967e-03	k: 948	n:170000
Cons ci ratio: 1.518458e-02	ci left: 2.794803e-01	ci right 2.837624e-01	k: 47875	n:170000
KS ci ratio: 1.522889e-01	ci left: 3.586625e-03	ci right 4.183431e-03	k: 659	n:170000
ALK   170000 perm   74 sec   (2311 perm/sec)   p_kst 3.876471e-03   p_cons 2.816176e-01   p_joint 5.576471e-03

Joint ci ratio: 1.242424e-01	ci left: 5.158161e-03	ci right 5.846801e-03	k: 989	n:180000
Cons ci ratio: 1.475600e-02	ci left: 2.795617e-01	ci right 2.837231e-01	k: 50695	n:180000
KS ci ratio: 1.478733e-01	ci left: 3.601248e-03	ci right 4.181576e-03	k: 699	n:180000
ALK   180000 perm   78 sec   (2303 perm/sec)   p_kst 3.883333e-03   p_cons 2.816389e-01   p_joint 5.494444e-03

Joint ci ratio: 1.214557e-01	ci left: 5.121338e-03	ci right 5.788624e-03	k: 1035	n:190000
Cons ci ratio: 1.438403e-02	ci left: 2.790111e-01	ci right 2.830587e-01	k: 53396	n:190000
KS ci ratio: 1.441144e-01	ci left: 3.599332e-03	ci right 4.163339e-03	k: 736	n:190000
ALK   190000 perm   83 sec   (2292 perm/sec)   p_kst 3.873684e-03   p_cons 2.810316e-01   p_joint 5.447368e-03

Joint ci ratio: 1.033265e-01	ci left: 6.775658e-03	ci right 7.518735e-03	k: 1428	n:200000
Cons ci ratio: 1.404230e-02	ci left: 2.784171e-01	ci right 2.823593e-01	k: 56077	n:200000
KS ci ratio: 1.402648e-01	ci left: 3.617076e-03	ci right 4.167457e-03	k: 777	n:200000
ALK   200000 perm   88 sec   (2281 perm/sec)   p_kst 3.885000e-03   p_cons 2.803850e-01   p_joint 7.140000e-03

Joint ci ratio: 1.008855e-01	ci left: 6.777829e-03	ci right 7.502543e-03	k: 1498	n:210000
Cons ci ratio: 1.370564e-02	ci left: 2.784129e-01	ci right 2.822598e-01	k: 58870	n:210000
KS ci ratio: 1.367082e-01	ci left: 3.633310e-03	ci right 4.171002e-03	k: 818	n:210000
ALK   210000 perm   93 sec   (2269 perm/sec)   p_kst 3.895238e-03   p_cons 2.803333e-01   p_joint 7.133333e-03

Joint ci ratio: 9.860965e-02	ci left: 6.779990e-03	ci right 7.487635e-03	k: 1568	n:220000
Cons ci ratio: 1.338591e-02	ci left: 2.785962e-01	ci right 2.823551e-01	k: 61704	n:220000
KS ci ratio: 1.340364e-01	ci left: 3.613077e-03	ci right 4.136492e-03	k: 851	n:220000
ALK   220000 perm   98 sec   (2255 perm/sec)   p_kst 3.868182e-03   p_cons 2.804727e-01   p_joint 7.127273e-03

Joint ci ratio: 9.843573e-02	ci left: 6.510607e-03	ci right 7.188867e-03	k: 1574	n:230000
Cons ci ratio: 1.309842e-02	ci left: 2.784303e-01	ci right 2.821057e-01	k: 64461	n:230000
KS ci ratio: 1.313664e-01	ci left: 3.603108e-03	ci right 4.113869e-03	k: 886	n:230000
ALK   230000 perm   103 sec   (2242 perm/sec)   p_kst 3.852174e-03   p_cons 2.802652e-01   p_joint 6.843478e-03

Joint ci ratio: 9.867083e-02	ci left: 6.210837e-03	ci right 6.859500e-03	k: 1567	n:240000
Cons ci ratio: 1.282471e-02	ci left: 2.784039e-01	ci right 2.820015e-01	k: 67248	n:240000
KS ci ratio: 1.285005e-01	ci left: 3.614229e-03	ci right 4.114537e-03	k: 926	n:240000
ALK   240000 perm   108 sec   (2224 perm/sec)   p_kst 3.858333e-03   p_cons 2.802000e-01   p_joint 6.529167e-03

Joint ci ratio: 9.713730e-02	ci left: 6.157498e-03	ci right 6.790026e-03	k: 1617	n:250000
Cons ci ratio: 1.257097e-02	ci left: 2.782685e-01	ci right 2.817926e-01	k: 70007	n:250000
KS ci ratio: 1.254891e-01	ci left: 3.643945e-03	ci right 4.135667e-03	k: 971	n:250000
ALK   250000 perm   113 sec   (2209 perm/sec)   p_kst 3.884000e-03   p_cons 2.800280e-01   p_joint 6.468000e-03

Joint ci ratio: 1.012614e-01	ci left: 5.440469e-03	ci right 6.024478e-03	k: 1489	n:260000
Cons ci ratio: 1.232818e-02	ci left: 2.782593e-01	ci right 2.817148e-01	k: 72796	n:260000
KS ci ratio: 1.228620e-01	ci left: 3.660316e-03	ci right 4.143154e-03	k: 1013	n:260000
ALK   260000 perm   119 sec   (2191 perm/sec)   p_kst 3.896154e-03   p_cons 2.799846e-01   p_joint 5.726923e-03

Joint ci ratio: 9.947554e-02	ci left: 5.433949e-03	ci right 6.006369e-03	k: 1543	n:270000
Cons ci ratio: 1.209671e-02	ci left: 2.783254e-01	ci right 2.817164e-01	k: 75605	n:270000
KS ci ratio: 1.203933e-01	ci left: 3.675573e-03	ci right 4.149988e-03	k: 1055	n:270000
ALK   270000 perm   124 sec   (2172 perm/sec)   p_kst 3.907407e-03   p_cons 2.800185e-01   p_joint 5.714815e-03

Joint ci ratio: 8.567320e-02	ci left: 7.103351e-03	ci right 7.742623e-03	k: 2077	n:280000
Cons ci ratio: 1.188318e-02	ci left: 2.782055e-01	ci right 2.815348e-01	k: 78363	n:280000
KS ci ratio: 1.181758e-01	ci left: 3.682898e-03	ci right 4.148891e-03	k: 1095	n:280000
ALK   280000 perm   131 sec   (2143 perm/sec)   p_kst 3.910714e-03   p_cons 2.798679e-01   p_joint 7.417857e-03

Joint ci ratio: 8.597644e-02	ci left: 6.811124e-03	ci right 7.426374e-03	k: 2063	n:290000
Cons ci ratio: 1.167357e-02	ci left: 2.783353e-01	ci right 2.816070e-01	k: 81191	n:290000
KS ci ratio: 1.160251e-01	ci left: 3.693141e-03	ci right 4.151343e-03	k: 1136	n:290000
ALK   290000 perm   137 sec   (2123 perm/sec)   p_kst 3.917241e-03   p_cons 2.799690e-01   p_joint 7.113793e-03

Joint ci ratio: 8.087614e-02	ci left: 7.455630e-03	ci right 8.087267e-03	k: 2330	n:300000
Cons ci ratio: 1.147819e-02	ci left: 2.783339e-01	ci right 2.815504e-01	k: 83982	n:300000
KS ci ratio: 1.140364e-01	ci left: 3.699534e-03	ci right 4.150132e-03	k: 1176	n:300000
ALK   300000 perm   143 sec   (2105 perm/sec)   p_kst 3.920000e-03   p_cons 2.799400e-01   p_joint 7.766667e-03

Joint ci ratio: 8.055622e-02	ci left: 7.275152e-03	ci right 7.888946e-03	k: 2349	n:310000
Cons ci ratio: 1.128761e-02	ci left: 2.785004e-01	ci right 2.816650e-01	k: 86825	n:310000
KS ci ratio: 1.121466e-01	ci left: 3.705577e-03	ci right 4.148937e-03	k: 1216	n:310000
ALK   310000 perm   148 sec   (2090 perm/sec)   p_kst 3.922581e-03   p_cons 2.800806e-01   p_joint 7.577419e-03

Joint ci ratio: 7.923500e-02	ci left: 7.289748e-03	ci right 7.894220e-03	k: 2428	n:320000
Cons ci ratio: 1.111568e-02	ci left: 2.783137e-01	ci right 2.814278e-01	k: 89558	n:320000
KS ci ratio: 1.103917e-01	ci left: 3.708261e-03	ci right 4.144548e-03	k: 1255	n:320000
ALK   320000 perm   154 sec   (2072 perm/sec)   p_kst 3.921875e-03   p_cons 2.798687e-01   p_joint 7.587500e-03

Joint ci ratio: 7.932648e-02	ci left: 7.053962e-03	ci right 7.639588e-03	k: 2423	n:330000
Cons ci ratio: 1.094726e-02	ci left: 2.782900e-01	ci right 2.813563e-01	k: 92341	n:330000
KS ci ratio: 1.089705e-01	ci left: 3.693145e-03	ci right 4.121700e-03	k: 1288	n:330000
ALK   330000 perm   162 sec   (2038 perm/sec)   p_kst 3.903030e-03   p_cons 2.798212e-01   p_joint 7.342424e-03

Joint ci ratio: 7.876440e-02	ci left: 6.947384e-03	ci right 7.519887e-03	k: 2458	n:340000
Cons ci ratio: 1.077581e-02	ci left: 2.786586e-01	ci right 2.816805e-01	k: 95257	n:340000
KS ci ratio: 1.069952e-01	ci left: 3.721889e-03	ci right 4.145458e-03	k: 1336	n:340000
ALK   340000 perm   169 sec   (2011 perm/sec)   p_kst 3.929412e-03   p_cons 2.801676e-01   p_joint 7.229412e-03

Joint ci ratio: 8.173725e-02	ci left: 6.261627e-03	ci right 6.798021e-03	k: 2284	n:350000
Cons ci ratio: 1.062119e-02	ci left: 2.786641e-01	ci right 2.816424e-01	k: 98053	n:350000
KS ci ratio: 1.051997e-01	ci left: 3.743493e-03	ci right 4.161929e-03	k: 1382	n:350000
ALK   350000 perm   176 sec   (1985 perm/sec)   p_kst 3.948571e-03   p_cons 2.801514e-01   p_joint 6.525714e-03

Joint ci ratio: 8.126293e-02	ci left: 6.161151e-03	ci right 6.685730e-03	k: 2311	n:360000
Cons ci ratio: 1.046914e-02	ci left: 2.788193e-01	ci right 2.817564e-01	k: 100903	n:360000
KS ci ratio: 1.040414e-01	ci left: 3.723362e-03	ci right 4.134686e-03	k: 1413	n:360000
ALK   360000 perm   182 sec   (1973 perm/sec)   p_kst 3.925000e-03   p_cons 2.802861e-01   p_joint 6.419444e-03

Joint ci ratio: 8.116412e-02	ci left: 6.010501e-03	ci right 6.521602e-03	k: 2317	n:370000
Cons ci ratio: 1.032675e-02	ci left: 2.788370e-01	ci right 2.817340e-01	k: 103705	n:370000
KS ci ratio: 1.024941e-01	ci left: 3.735947e-03	ci right 4.142153e-03	k: 1456	n:370000
ALK   370000 perm   189 sec   (1960 perm/sec)   p_kst 3.935135e-03   p_cons 2.802838e-01   p_joint 6.262162e-03

Joint ci ratio: 7.571030e-02	ci left: 6.739949e-03	ci right 7.272873e-03	k: 2661	n:380000
Cons ci ratio: 1.018664e-02	ci left: 2.789879e-01	ci right 2.818470e-01	k: 106558	n:380000
KS ci ratio: 1.014220e-01	ci left: 3.717129e-03	ci right 4.116810e-03	k: 1487	n:380000
ALK   380000 perm   195 sec   (1948 perm/sec)   p_kst 3.913158e-03   p_cons 2.804158e-01   p_joint 7.002632e-03

Joint ci ratio: 7.660591e-02	ci left: 6.413657e-03	ci right 6.927047e-03	k: 2600	n:390000
Cons ci ratio: 1.005316e-02	ci left: 2.790879e-01	ci right 2.819103e-01	k: 109394	n:390000
KS ci ratio: 9.979094e-02	ci left: 3.744301e-03	ci right 4.140049e-03	k: 1536	n:390000
ALK   390000 perm   202 sec   (1935 perm/sec)   p_kst 3.938462e-03   p_cons 2.804974e-01   p_joint 6.666667e-03

Outputting figure to mutsig2_images.part000000000006/ALK.13_4979_390000_0.0039385_0.2805_0.0066667.png
                gene_name: ALK
               theta_stop: 0.100 
                    nperm: 390000 
                     p_ks: 0.0039 
        ci_ks_bounds_left: 0.0037 
       ci_ks_bounds_right: 0.0041 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.0067 
     ci_joint_bounds_left: 0.0064 
    ci_joint_bounds_right: 0.0069 

Current progress: 5 percent done.
ALPK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.728889e-02	ci left: 5.150563e-01	ci right 5.347292e-01	k: 5249	n:10000
Cons ci ratio: 1.074258e-01	ci left: 1.111530e-01	ci right 1.238707e-01	k: 1174	n:10000
KS ci ratio: 1.585132e-02	ci left: 8.525343e-01	ci right 8.662556e-01	k: 8595	n:10000
ALPK2   10000 perm   3 sec   (3301 perm/sec)   p_kst 8.595000e-01   p_cons 1.174000e-01   p_joint 5.249000e-01

Joint ci ratio: 3.077798e-02	ci left: 4.408914e-01	ci right 4.547238e-01	k: 8956	n:20000
Cons ci ratio: 7.391069e-02	ci left: 1.187242e-01	ci right 1.278856e-01	k: 2465	n:20000
KS ci ratio: 1.111014e-02	ci left: 8.567366e-01	ci right 8.663580e-01	k: 17232	n:20000
ALPK2   20000 perm   7 sec   (3034 perm/sec)   p_kst 8.616000e-01   p_cons 1.232500e-01   p_joint 4.478000e-01

Outputting figure to mutsig2_images.part000000000006/ALPK2.13_6561_20000_0.8616_0.12325_0.4478.png
                gene_name: ALPK2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 7 percent done.
ALPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.927115e-02	ci left: 2.951909e-01	ci right 3.133232e-01	k: 3042	n:10000
Cons ci ratio: 1.537925e-01	ci left: 5.629122e-02	ci right 6.576649e-02	k: 609	n:10000
KS ci ratio: 2.110358e-02	ci left: 7.669899e-01	ci right 7.834495e-01	k: 7753	n:10000
ALPK1   10000 perm   2 sec   (4487 perm/sec)   p_kst 7.753000e-01   p_cons 6.090000e-02   p_joint 3.042000e-01

Joint ci ratio: 4.171403e-02	ci left: 2.998654e-01	ci right 3.126909e-01	k: 6125	n:20000
Cons ci ratio: 1.075349e-01	ci left: 5.894035e-02	ci right 6.568759e-02	k: 1245	n:20000
KS ci ratio: 1.498450e-02	ci left: 7.679877e-01	ci right 7.796326e-01	k: 15477	n:20000
ALPK1   20000 perm   5 sec   (4027 perm/sec)   p_kst 7.738500e-01   p_cons 6.225000e-02   p_joint 3.062500e-01

Joint ci ratio: 3.500392e-02	ci left: 2.896107e-01	ci right 2.999624e-01	k: 8843	n:30000
Cons ci ratio: 8.760277e-02	ci left: 5.981931e-02	ci right 6.533244e-02	k: 1876	n:30000
KS ci ratio: 1.229011e-02	ci left: 7.674782e-01	ci right 7.770023e-01	k: 23168	n:30000
ALPK1   30000 perm   8 sec   (3681 perm/sec)   p_kst 7.722667e-01   p_cons 6.253333e-02   p_joint 2.947667e-01

Outputting figure to mutsig2_images.part000000000006/ALPK1.10_3791_30000_0.77227_0.062533_0.29477.png
                gene_name: ALPK1
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 8 percent done.
ALDH1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.587043e-02	ci left: 5.343769e-01	ci right 5.539974e-01	k: 5442	n:10000
Cons ci ratio: 6.864576e-02	ci left: 2.373862e-01	ci right 2.543621e-01	k: 2458	n:10000
KS ci ratio: 2.168413e-02	ci left: 7.572717e-01	ci right 7.739733e-01	k: 7657	n:10000
ALDH1B1   10000 perm   2 sec   (5128 perm/sec)   p_kst 7.657000e-01   p_cons 2.458000e-01   p_joint 5.442000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH1B1.7_1558_10000_0.7657_0.2458_0.5442.png
                gene_name: ALDH1B1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 10 percent done.
ALG10B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.380780e-02	ci left: 2.651762e-01	ci right 2.827556e-01	k: 2739	n:10000
Cons ci ratio: 1.715456e-02	ci left: 8.319533e-01	ci right 8.464485e-01	k: 8393	n:10000
KS ci ratio: 8.830905e-02	ci left: 1.572823e-01	ci right 1.719136e-01	k: 1645	n:10000
ALG10B   10000 perm   2 sec   (5189 perm/sec)   p_kst 1.645000e-01   p_cons 8.393000e-01   p_joint 2.739000e-01

Outputting figure to mutsig2_images.part000000000006/ALG10B.7_1434_10000_0.1645_0.8393_0.2739.png
                gene_name: ALG10B
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 12 percent done.
ALPK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.011077e-01	ci left: 3.291000e-02	ci right 4.036307e-02	k: 365	n:10000
Cons ci ratio: 4.479208e-01	ci left: 5.903663e-03	ci right 9.392367e-03	k: 75	n:10000
KS ci ratio: 1.977202e-02	ci left: 7.891832e-01	ci right 8.050433e-01	k: 7972	n:10000
ALPK3   10000 perm   3 sec   (3732 perm/sec)   p_kst 7.972000e-01   p_cons 7.500000e-03   p_joint 3.650000e-02

Joint ci ratio: 1.165856e-01	ci left: 5.037280e-02	ci right 5.665781e-02	k: 1069	n:20000
Cons ci ratio: 3.677103e-01	ci left: 4.613191e-03	ci right 6.734416e-03	k: 112	n:20000
KS ci ratio: 1.408437e-02	ci left: 7.891354e-01	ci right 8.003788e-01	k: 15896	n:20000
ALPK3   20000 perm   6 sec   (3417 perm/sec)   p_kst 7.948000e-01   p_cons 5.600000e-03   p_joint 5.345000e-02

Joint ci ratio: 8.931561e-02	ci left: 5.763236e-02	ci right 6.305317e-02	k: 1809	n:30000
Cons ci ratio: 2.921143e-01	ci left: 5.095739e-03	ci right 6.868654e-03	k: 178	n:30000
KS ci ratio: 1.155029e-02	ci left: 7.887400e-01	ci right 7.979364e-01	k: 23801	n:30000
ALPK3   30000 perm   9 sec   (3320 perm/sec)   p_kst 7.933667e-01   p_cons 5.933333e-03   p_joint 6.030000e-02

Joint ci ratio: 7.684844e-02	ci left: 5.872314e-02	ci right 6.344083e-02	k: 2442	n:40000
Cons ci ratio: 2.528019e-01	ci left: 5.219877e-03	ci right 6.753176e-03	k: 238	n:40000
KS ci ratio: 9.997227e-03	ci left: 7.895497e-01	ci right 7.975076e-01	k: 31742	n:40000
ALPK3   40000 perm   12 sec   (3241 perm/sec)   p_kst 7.935500e-01   p_cons 5.950000e-03   p_joint 6.105000e-02

Joint ci ratio: 6.984756e-02	ci left: 5.718640e-02	ci right 6.134496e-02	k: 2962	n:50000
Cons ci ratio: 2.184301e-01	ci left: 5.700897e-03	ci right 7.117327e-03	k: 319	n:50000
KS ci ratio: 9.013496e-03	ci left: 7.873288e-01	ci right 7.944774e-01	k: 39546	n:50000
ALPK3   50000 perm   16 sec   (3178 perm/sec)   p_kst 7.909200e-01   p_cons 6.380000e-03   p_joint 5.924000e-02

Joint ci ratio: 8.273277e-02	ci left: 3.457254e-02	ci right 3.757255e-02	k: 2163	n:60000
Cons ci ratio: 2.065577e-01	ci left: 5.350293e-03	ci right 6.598220e-03	k: 357	n:60000
KS ci ratio: 8.225747e-03	ci left: 7.877410e-01	ci right 7.942641e-01	k: 47461	n:60000
ALPK3   60000 perm   19 sec   (3128 perm/sec)   p_kst 7.910167e-01   p_cons 5.950000e-03   p_joint 3.605000e-02

Joint ci ratio: 8.223104e-02	ci left: 3.014839e-02	ci right 3.274778e-02	k: 2200	n:70000
Cons ci ratio: 1.884563e-01	ci left: 5.563822e-03	ci right 6.734825e-03	k: 429	n:70000
KS ci ratio: 7.600473e-03	ci left: 7.886438e-01	ci right 7.946749e-01	k: 55417	n:70000
ALPK3   70000 perm   23 sec   (3080 perm/sec)   p_kst 7.916714e-01   p_cons 6.128571e-03   p_joint 3.142857e-02

Joint ci ratio: 6.685809e-02	ci left: 3.982085e-02	ci right 4.258755e-02	k: 3295	n:80000
Cons ci ratio: 1.740587e-01	ci left: 5.751478e-03	ci right 6.859783e-03	k: 503	n:80000
KS ci ratio: 7.100620e-03	ci left: 7.892586e-01	ci right 7.948952e-01	k: 63367	n:80000
ALPK3   80000 perm   26 sec   (3019 perm/sec)   p_kst 7.920875e-01   p_cons 6.287500e-03   p_joint 4.118750e-02

Joint ci ratio: 7.177623e-02	ci left: 3.092521e-02	ci right 3.323841e-02	k: 2886	n:90000
Cons ci ratio: 1.641042e-01	ci left: 5.782829e-03	ci right 6.827153e-03	k: 566	n:90000
KS ci ratio: 6.696305e-03	ci left: 7.893334e-01	ci right 7.946478e-01	k: 71280	n:90000
ALPK3   90000 perm   30 sec   (2961 perm/sec)   p_kst 7.920000e-01   p_cons 6.288889e-03   p_joint 3.206667e-02

Joint ci ratio: 6.131324e-02	ci left: 3.806466e-02	ci right 4.048216e-02	k: 3926	n:100000
Cons ci ratio: 1.564344e-01	ci left: 5.751686e-03	ci right 6.737283e-03	k: 623	n:100000
KS ci ratio: 6.351514e-03	ci left: 7.895312e-01	ci right 7.945718e-01	k: 79206	n:100000
ALPK3   100000 perm   34 sec   (2922 perm/sec)   p_kst 7.920600e-01   p_cons 6.230000e-03   p_joint 3.926000e-02

Joint ci ratio: 5.934272e-02	ci left: 3.702115e-02	ci right 3.929419e-02	k: 4196	n:110000
Cons ci ratio: 1.488710e-01	ci left: 5.797162e-03	ci right 6.738246e-03	k: 688	n:110000
KS ci ratio: 6.048508e-03	ci left: 7.900548e-01	ci right 7.948570e-01	k: 87171	n:110000
ALPK3   110000 perm   38 sec   (2887 perm/sec)   p_kst 7.924636e-01   p_cons 6.254545e-03   p_joint 3.814545e-02

Joint ci ratio: 6.029449e-02	ci left: 3.299815e-02	ci right 3.505778e-02	k: 4082	n:120000
Cons ci ratio: 1.437542e-01	ci left: 5.715462e-03	ci right 6.608656e-03	k: 738	n:120000
KS ci ratio: 5.800779e-03	ci left: 7.896003e-01	ci right 7.942022e-01	k: 95029	n:120000
ALPK3   120000 perm   42 sec   (2845 perm/sec)   p_kst 7.919083e-01   p_cons 6.150000e-03   p_joint 3.401667e-02

Joint ci ratio: 5.759463e-02	ci left: 3.341582e-02	ci right 3.540502e-02	k: 4472	n:130000
Cons ci ratio: 1.365432e-01	ci left: 5.869660e-03	ci right 6.737199e-03	k: 818	n:130000
KS ci ratio: 5.586743e-03	ci left: 7.888876e-01	ci right 7.933148e-01	k: 102844	n:130000
ALPK3   130000 perm   47 sec   (2786 perm/sec)   p_kst 7.911077e-01   p_cons 6.292308e-03   p_joint 3.440000e-02

Joint ci ratio: 5.562574e-02	ci left: 3.330341e-02	ci right 3.521595e-02	k: 4795	n:140000
Cons ci ratio: 1.311283e-01	ci left: 5.926768e-03	ci right 6.765303e-03	k: 887	n:140000
KS ci ratio: 5.392137e-03	ci left: 7.884376e-01	ci right 7.927075e-01	k: 110681	n:140000
ALPK3   140000 perm   52 sec   (2715 perm/sec)   p_kst 7.905786e-01   p_cons 6.335714e-03   p_joint 3.425000e-02

Joint ci ratio: 5.543528e-02	ci left: 3.136498e-02	ci right 3.315982e-02	k: 4838	n:150000
Cons ci ratio: 1.271826e-01	ci left: 5.892916e-03	ci right 6.699680e-03	k: 943	n:150000
KS ci ratio: 5.213995e-03	ci left: 7.882108e-01	ci right 7.923379e-01	k: 118542	n:150000
ALPK3   150000 perm   56 sec   (2687 perm/sec)   p_kst 7.902800e-01   p_cons 6.286667e-03   p_joint 3.225333e-02

Joint ci ratio: 5.303389e-02	ci left: 3.214238e-02	ci right 3.389959e-02	k: 5282	n:160000
Cons ci ratio: 1.235108e-01	ci left: 5.869684e-03	ci right 6.648370e-03	k: 1000	n:160000
KS ci ratio: 5.057831e-03	ci left: 7.876572e-01	ci right 7.916573e-01	k: 126346	n:160000
ALPK3   160000 perm   60 sec   (2655 perm/sec)   p_kst 7.896625e-01   p_cons 6.250000e-03   p_joint 3.301250e-02

Joint ci ratio: 4.546308e-02	ci left: 4.094662e-02	ci right 4.285727e-02	k: 7122	n:170000
Cons ci ratio: 1.171675e-01	ci left: 6.157758e-03	ci right 6.929804e-03	k: 1111	n:170000
KS ci ratio: 5.036430e-03	ci left: 7.788965e-01	ci right 7.828351e-01	k: 132748	n:170000
ALPK3   170000 perm   65 sec   (2619 perm/sec)   p_kst 7.808706e-01   p_cons 6.535294e-03   p_joint 4.189412e-02

Joint ci ratio: 4.423730e-02	ci left: 4.087457e-02	ci right 4.272912e-02	k: 7523	n:180000
Cons ci ratio: 1.140817e-01	ci left: 6.144746e-03	ci right 6.893503e-03	k: 1172	n:180000
KS ci ratio: 4.888308e-03	ci left: 7.793887e-01	ci right 7.832134e-01	k: 140635	n:180000
ALPK3   180000 perm   70 sec   (2587 perm/sec)   p_kst 7.813056e-01   p_cons 6.511111e-03   p_joint 4.179444e-02

Joint ci ratio: 4.246110e-02	ci left: 4.201927e-02	ci right 4.384734e-02	k: 8156	n:190000
Cons ci ratio: 1.111822e-01	ci left: 6.138460e-03	ci right 6.866194e-03	k: 1234	n:190000
KS ci ratio: 4.762403e-03	ci left: 7.791177e-01	ci right 7.828422e-01	k: 148387	n:190000
ALPK3   190000 perm   74 sec   (2556 perm/sec)   p_kst 7.809842e-01   p_cons 6.494737e-03   p_joint 4.292632e-02

Joint ci ratio: 4.188883e-02	ci left: 4.107059e-02	ci right 4.283272e-02	k: 8389	n:200000
Cons ci ratio: 1.077844e-01	ci left: 6.215734e-03	ci right 6.928680e-03	k: 1313	n:200000
KS ci ratio: 4.640720e-03	ci left: 7.792461e-01	ci right 7.828757e-01	k: 156213	n:200000
ALPK3   200000 perm   79 sec   (2526 perm/sec)   p_kst 7.810650e-01   p_cons 6.565000e-03   p_joint 4.194500e-02

Joint ci ratio: 4.539868e-02	ci left: 3.350681e-02	ci right 3.506799e-02	k: 7199	n:210000
Cons ci ratio: 1.087211e-01	ci left: 5.817757e-03	ci right 6.491222e-03	k: 1291	n:210000
KS ci ratio: 4.529866e-03	ci left: 7.792154e-01	ci right 7.827578e-01	k: 164008	n:210000
ALPK3   210000 perm   84 sec   (2491 perm/sec)   p_kst 7.809905e-01   p_cons 6.147619e-03   p_joint 3.428095e-02

Joint ci ratio: 4.715544e-02	ci left: 2.973593e-02	ci right 3.117647e-02	k: 6699	n:220000
Cons ci ratio: 1.058492e-01	ci left: 5.867389e-03	ci right 6.527542e-03	k: 1362	n:220000
KS ci ratio: 4.426299e-03	ci left: 7.792112e-01	ci right 7.826723e-01	k: 171808	n:220000
ALPK3   220000 perm   90 sec   (2435 perm/sec)   p_kst 7.809455e-01   p_cons 6.190909e-03   p_joint 3.045000e-02

Joint ci ratio: 4.224400e-02	ci left: 3.532411e-02	ci right 3.685282e-02	k: 8299	n:230000
Cons ci ratio: 1.033387e-01	ci left: 5.895973e-03	ci right 6.542652e-03	k: 1429	n:230000
KS ci ratio: 4.328426e-03	ci left: 7.792954e-01	ci right 7.826801e-01	k: 179628	n:230000
ALPK3   230000 perm   95 sec   (2414 perm/sec)   p_kst 7.809913e-01   p_cons 6.213043e-03   p_joint 3.608261e-02

Joint ci ratio: 4.134433e-02	ci left: 3.535723e-02	ci right 3.685400e-02	k: 8664	n:240000
Cons ci ratio: 1.019626e-01	ci left: 5.808622e-03	ci right 6.436728e-03	k: 1468	n:240000
KS ci ratio: 4.234861e-03	ci left: 7.795279e-01	ci right 7.828403e-01	k: 187485	n:240000
ALPK3   240000 perm   100 sec   (2393 perm/sec)   p_kst 7.811875e-01   p_cons 6.116667e-03   p_joint 3.610000e-02

Joint ci ratio: 4.075331e-02	ci left: 3.496024e-02	ci right 3.641855e-02	k: 8921	n:250000
Cons ci ratio: 9.994229e-02	ci left: 5.810218e-03	ci right 6.425317e-03	k: 1528	n:250000
KS ci ratio: 4.151866e-03	ci left: 7.793495e-01	ci right 7.825960e-01	k: 195244	n:250000
ALPK3   250000 perm   105 sec   (2373 perm/sec)   p_kst 7.809760e-01   p_cons 6.112000e-03   p_joint 3.568400e-02

Outputting figure to mutsig2_images.part000000000006/ALPK3.7_5780_250000_0.78098_0.006112_0.035684.png
                gene_name: ALPK3
               theta_stop: 0.100 
                    nperm: 250000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.0061 
      ci_cons_bounds_left: 0.0058 
     ci_cons_bounds_right: 0.0064 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.036 

Current progress: 14 percent done.
AKNA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.933629e-02	ci left: 3.773383e-01	ci right 3.965276e-01	k: 3869	n:10000
Cons ci ratio: 7.272974e-02	ci left: 2.168465e-01	ci right 2.333139e-01	k: 2250	n:10000
KS ci ratio: 3.795200e-02	ci left: 5.062518e-01	ci right 5.259388e-01	k: 5161	n:10000
AKNA   10000 perm   2 sec   (4071 perm/sec)   p_kst 5.161000e-01   p_cons 2.250000e-01   p_joint 3.869000e-01

Outputting figure to mutsig2_images.part000000000006/AKNA.6_4404_10000_0.5161_0.225_0.3869.png
                gene_name: AKNA
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 15 percent done.
AKT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.254871e-02	ci left: 1.763499e-01	ci right 1.916346e-01	k: 1839	n:10000
Cons ci ratio: 3.853352e-02	ci left: 4.986503e-01	ci right 5.183447e-01	k: 5085	n:10000
KS ci ratio: 1.156770e-01	ci left: 9.701134e-02	ci right 1.090210e-01	k: 1029	n:10000
AKT2   10000 perm   2 sec   (4934 perm/sec)   p_kst 1.029000e-01   p_cons 5.085000e-01   p_joint 1.839000e-01

Joint ci ratio: 4.272691e-02	ci left: 2.898275e-01	ci right 3.025318e-01	k: 5923	n:20000
Cons ci ratio: 2.714322e-02	ci left: 5.034959e-01	ci right 5.174011e-01	k: 10209	n:20000
KS ci ratio: 8.107548e-02	ci left: 1.003913e-01	ci right 1.089240e-01	k: 2092	n:20000
AKT2   20000 perm   5 sec   (4318 perm/sec)   p_kst 1.046000e-01   p_cons 5.104500e-01   p_joint 2.961500e-01

Outputting figure to mutsig2_images.part000000000006/AKT2.6_1498_20000_0.1046_0.51045_0.29615.png
                gene_name: AKT2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 17 percent done.
ALAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.918678e-02	ci left: 2.345208e-01	ci right 2.514292e-01	k: 2429	n:10000
Cons ci ratio: 1.700177e-02	ci left: 8.343964e-01	ci right 8.488040e-01	k: 8417	n:10000
KS ci ratio: 9.518550e-02	ci left: 1.380551e-01	ci right 1.519524e-01	k: 1449	n:10000
ALAS1   10000 perm   2 sec   (5548 perm/sec)   p_kst 1.449000e-01   p_cons 8.417000e-01   p_joint 2.429000e-01

Outputting figure to mutsig2_images.part000000000006/ALAS1.6_1963_10000_0.1449_0.8417_0.2429.png
                gene_name: ALAS1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 19 percent done.
ALAS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.537925e-01	ci left: 5.629122e-02	ci right 6.576649e-02	k: 609	n:10000
Cons ci ratio: 2.954286e-01	ci left: 1.474309e-02	ci right 1.994354e-02	k: 172	n:10000
KS ci ratio: 5.103114e-02	ci left: 3.615207e-01	ci right 3.805545e-01	k: 3710	n:10000
ALAS2   10000 perm   2 sec   (5710 perm/sec)   p_kst 3.710000e-01   p_cons 1.720000e-02   p_joint 6.090000e-02

Joint ci ratio: 1.158440e-01	ci left: 5.100488e-02	ci right 5.732553e-02	k: 1082	n:20000
Cons ci ratio: 2.044404e-01	ci left: 1.620275e-02	ci right 1.993924e-02	k: 360	n:20000
KS ci ratio: 3.713129e-02	ci left: 3.511527e-01	ci right 3.644887e-01	k: 7156	n:20000
ALAS2   20000 perm   4 sec   (4947 perm/sec)   p_kst 3.578000e-01   p_cons 1.800000e-02   p_joint 5.410000e-02

Joint ci ratio: 8.674324e-02	ci left: 6.096215e-02	ci right 6.652270e-02	k: 1911	n:30000
Cons ci ratio: 1.740149e-01	ci left: 1.518449e-02	ci right 1.811019e-02	k: 498	n:30000
KS ci ratio: 3.040018e-02	ci left: 3.511440e-01	ci right 3.620171e-01	k: 10697	n:30000
ALAS2   30000 perm   6 sec   (4685 perm/sec)   p_kst 3.565667e-01   p_cons 1.660000e-02   p_joint 6.370000e-02

Joint ci ratio: 7.355265e-02	ci left: 6.385622e-02	ci right 6.875697e-02	k: 2651	n:40000
Cons ci ratio: 1.500535e-01	ci left: 1.551503e-02	ci right 1.805582e-02	k: 670	n:40000
KS ci ratio: 2.621866e-02	ci left: 3.537734e-01	ci right 3.631972e-01	k: 14339	n:40000
ALAS2   40000 perm   9 sec   (4538 perm/sec)   p_kst 3.584750e-01   p_cons 1.675000e-02   p_joint 6.627500e-02

Joint ci ratio: 5.438661e-02	ci left: 9.155445e-02	ci right 9.669278e-02	k: 4705	n:50000
Cons ci ratio: 1.354284e-01	ci left: 1.536288e-02	ci right 1.761376e-02	k: 823	n:50000
KS ci ratio: 2.342317e-02	ci left: 3.548135e-01	ci right 3.632429e-01	k: 17951	n:50000
ALAS2   50000 perm   11 sec   (4420 perm/sec)   p_kst 3.590200e-01   p_cons 1.646000e-02   p_joint 9.410000e-02

Joint ci ratio: 6.212168e-02	ci left: 6.029679e-02	ci right 6.417902e-02	k: 3733	n:60000
Cons ci ratio: 1.226116e-01	ci left: 1.572207e-02	ci right 1.779172e-02	k: 1004	n:60000
KS ci ratio: 2.169037e-02	ci left: 3.486429e-01	ci right 3.563047e-01	k: 21148	n:60000
ALAS2   60000 perm   14 sec   (4294 perm/sec)   p_kst 3.524667e-01   p_cons 1.673333e-02   p_joint 6.221667e-02

Joint ci ratio: 6.066741e-02	ci left: 5.457558e-02	ci right 5.800418e-02	k: 3939	n:70000
Cons ci ratio: 1.189741e-01	ci left: 1.436211e-02	ci right 1.619268e-02	k: 1068	n:70000
KS ci ratio: 2.009448e-02	ci left: 3.486321e-01	ci right 3.557230e-01	k: 24652	n:70000
ALAS2   70000 perm   17 sec   (4198 perm/sec)   p_kst 3.521714e-01   p_cons 1.525714e-02   p_joint 5.627143e-02

Joint ci ratio: 6.028411e-02	ci left: 4.868465e-02	ci right 5.172307e-02	k: 4015	n:80000
Cons ci ratio: 1.118359e-01	ci left: 1.427846e-02	ci right 1.598196e-02	k: 1209	n:80000
KS ci ratio: 1.880431e-02	ci left: 3.486772e-01	ci right 3.553085e-01	k: 28159	n:80000
ALAS2   80000 perm   20 sec   (4051 perm/sec)   p_kst 3.519875e-01   p_cons 1.511250e-02   p_joint 5.018750e-02

Joint ci ratio: 5.469043e-02	ci left: 5.252125e-02	ci right 5.548536e-02	k: 4859	n:90000
Cons ci ratio: 1.012277e-01	ci left: 1.555862e-02	ci right 1.722832e-02	k: 1474	n:90000
KS ci ratio: 1.770472e-02	ci left: 3.494889e-01	ci right 3.557428e-01	k: 31735	n:90000
ALAS2   90000 perm   23 sec   (3951 perm/sec)   p_kst 3.526111e-01   p_cons 1.637778e-02   p_joint 5.398889e-02

Joint ci ratio: 5.287989e-02	ci left: 5.071089e-02	ci right 5.347516e-02	k: 5208	n:100000
Cons ci ratio: 9.611926e-02	ci left: 1.557304e-02	ci right 1.715519e-02	k: 1635	n:100000
KS ci ratio: 1.680361e-02	ci left: 3.494484e-01	ci right 3.553801e-01	k: 35241	n:100000
ALAS2   100000 perm   26 sec   (3853 perm/sec)   p_kst 3.524100e-01   p_cons 1.635000e-02   p_joint 5.208000e-02

Outputting figure to mutsig2_images.part000000000006/ALAS2.6_1880_100000_0.35241_0.01635_0.05208.png
                gene_name: ALAS2
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.053 

Current progress: 20 percent done.
ALDH1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.598517e-02	ci left: 6.855679e-01	ci right 7.037185e-01	k: 6947	n:10000
Cons ci ratio: 1.873320e-02	ci left: 8.063342e-01	ci right 8.216825e-01	k: 8141	n:10000
KS ci ratio: 3.651132e-02	ci left: 5.255657e-01	ci right 5.452137e-01	k: 5354	n:10000
ALDH1A2   10000 perm   2 sec   (5267 perm/sec)   p_kst 5.354000e-01   p_cons 8.141000e-01   p_joint 6.947000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH1A2.6_1609_10000_0.5354_0.8141_0.6947.png
                gene_name: ALDH1A2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 22 percent done.
ALDH1A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.362151e-02	ci left: 5.663433e-01	ci right 5.858123e-01	k: 5761	n:10000
Cons ci ratio: 5.315188e-02	ci left: 3.428323e-01	ci right 3.616539e-01	k: 3522	n:10000
KS ci ratio: 3.407791e-02	ci left: 5.597262e-01	ci right 5.792333e-01	k: 5695	n:10000
ALDH1A3   10000 perm   2 sec   (5020 perm/sec)   p_kst 5.695000e-01   p_cons 3.522000e-01   p_joint 5.761000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH1A3.6_1591_10000_0.5695_0.3522_0.5761.png
                gene_name: ALDH1A3
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 24 percent done.
ALDH1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.658476e-02	ci left: 5.245646e-01	ci right 5.442154e-01	k: 5344	n:10000
Cons ci ratio: 5.504455e-02	ci left: 3.271384e-01	ci right 3.457570e-01	k: 3364	n:10000
KS ci ratio: 3.985807e-02	ci left: 4.817552e-01	ci right 5.014497e-01	k: 4916	n:10000
ALDH1L1   10000 perm   2 sec   (4723 perm/sec)   p_kst 4.916000e-01   p_cons 3.364000e-01   p_joint 5.344000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH1L1.6_2797_10000_0.4916_0.3364_0.5344.png
                gene_name: ALDH1L1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 25 percent done.
ALG8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.338123e-02	ci left: 5.698531e-01	ci right 5.893005e-01	k: 5796	n:10000
KS ci ratio: 1.557477e-02	ci left: 8.568193e-01	ci right 8.703681e-01	k: 8637	n:10000
ALG8   10000 perm   2 sec   (5105 perm/sec)   p_kst 8.637000e-01   p_cons 5.796000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALG8.6_1692_10000_0.8637_0.5796_1.png
                gene_name: ALG8
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
ALDH18A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.935118e-02	ci left: 4.881520e-01	ci right 5.078491e-01	k: 4980	n:10000
Cons ci ratio: 3.818054e-02	ci left: 5.032509e-01	ci right 5.229414e-01	k: 5131	n:10000
KS ci ratio: 5.555378e-02	ci left: 3.230678e-01	ci right 3.416300e-01	k: 3323	n:10000
ALDH18A1   10000 perm   2 sec   (4922 perm/sec)   p_kst 3.323000e-01   p_cons 5.131000e-01   p_joint 4.980000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH18A1.5_2456_10000_0.3323_0.5131_0.498.png
                gene_name: ALDH18A1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 29 percent done.
ALDH1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.419881e-02	ci left: 2.100392e-01	ci right 2.263253e-01	k: 2181	n:10000
Cons ci ratio: 7.385259e-02	ci left: 2.116174e-01	ci right 2.279461e-01	k: 2197	n:10000
KS ci ratio: 6.141010e-02	ci left: 2.805242e-01	ci right 2.983986e-01	k: 2894	n:10000
ALDH1L2   10000 perm   2 sec   (4565 perm/sec)   p_kst 2.894000e-01   p_cons 2.197000e-01   p_joint 2.181000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH1L2.5_2864_10000_0.2894_0.2197_0.2181.png
                gene_name: ALDH1L2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 31 percent done.
ALDOB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.933755e-02	ci left: 2.337305e-01	ci right 2.506200e-01	k: 2421	n:10000
Cons ci ratio: 2.308428e-02	ci left: 7.338101e-01	ci right 7.510485e-01	k: 7425	n:10000
KS ci ratio: 9.871639e-02	ci left: 1.294361e-01	ci right 1.429766e-01	k: 1361	n:10000
ALDOB   10000 perm   2 sec   (5896 perm/sec)   p_kst 1.361000e-01   p_cons 7.425000e-01   p_joint 2.421000e-01

Outputting figure to mutsig2_images.part000000000006/ALDOB.5_1127_10000_0.1361_0.7425_0.2421.png
                gene_name: ALDOB
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 32 percent done.
ALLC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.233711e-02	ci left: 4.516917e-01	ci right 4.713307e-01	k: 4615	n:10000
Cons ci ratio: 4.529048e-02	ci left: 4.184738e-01	ci right 4.379680e-01	k: 4282	n:10000
KS ci ratio: 5.153779e-02	ci left: 3.569465e-01	ci right 3.759313e-01	k: 3664	n:10000
ALLC   10000 perm   2 sec   (5487 perm/sec)   p_kst 3.664000e-01   p_cons 4.282000e-01   p_joint 4.615000e-01

Outputting figure to mutsig2_images.part000000000006/ALLC.5_1220_10000_0.3664_0.4282_0.4615.png
                gene_name: ALLC
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 34 percent done.
ALOX15B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.795547e-02	ci left: 8.190349e-01	ci right 8.339744e-01	k: 8266	n:10000
Cons ci ratio: 4.701526e-02	ci left: 4.003376e-01	ci right 4.197148e-01	k: 4100	n:10000
KS ci ratio: 2.197400e-02	ci left: 7.524148e-01	ci right 7.692330e-01	k: 7609	n:10000
ALOX15B   10000 perm   2 sec   (4639 perm/sec)   p_kst 7.609000e-01   p_cons 4.100000e-01   p_joint 8.266000e-01

Outputting figure to mutsig2_images.part000000000006/ALOX15B.5_2087_10000_0.7609_0.41_0.8266.png
                gene_name: ALOX15B
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 36 percent done.
AKD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.872080e-01	ci left: 3.805695e-02	ci right 4.601263e-02	k: 419	n:10000
Cons ci ratio: 8.449635e-02	ci left: 1.695643e-01	ci right 1.846243e-01	k: 1770	n:10000
KS ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
AKD1   10000 perm   3 sec   (3747 perm/sec)   p_kst 9.800000e-03   p_cons 1.770000e-01   p_joint 4.190000e-02

Joint ci ratio: 2.180628e-01	ci left: 1.416473e-02	ci right 1.767805e-02	k: 317	n:20000
Cons ci ratio: 6.029774e-02	ci left: 1.691638e-01	ci right 1.797311e-01	k: 3488	n:20000
KS ci ratio: 2.786178e-01	ci left: 8.434855e-03	ci right 1.121045e-02	k: 195	n:20000
AKD1   20000 perm   6 sec   (3430 perm/sec)   p_kst 9.750000e-03   p_cons 1.744000e-01   p_joint 1.585000e-02

Joint ci ratio: 1.951809e-01	ci left: 1.197088e-02	ci right 1.459130e-02	k: 397	n:30000
Cons ci ratio: 4.909966e-02	ci left: 1.709133e-01	ci right 1.795496e-01	k: 5256	n:30000
KS ci ratio: 2.218460e-01	ci left: 9.156946e-03	ci right 1.147270e-02	k: 308	n:30000
AKD1   30000 perm   9 sec   (3295 perm/sec)   p_kst 1.026667e-02   p_cons 1.752000e-01   p_joint 1.323333e-02

Joint ci ratio: 1.418846e-01	ci left: 1.739501e-02	ci right 2.007550e-02	k: 748	n:40000
Cons ci ratio: 4.248614e-02	ci left: 1.717338e-01	ci right 1.792134e-01	k: 7018	n:40000
KS ci ratio: 1.962579e-01	ci left: 8.905409e-03	ci right 1.086673e-02	k: 394	n:40000
AKD1   40000 perm   13 sec   (3200 perm/sec)   p_kst 9.850000e-03   p_cons 1.754500e-01   p_joint 1.870000e-02

Joint ci ratio: 1.446256e-01	ci left: 1.343189e-02	ci right 1.554503e-02	k: 723	n:50000
Cons ci ratio: 3.695218e-02	ci left: 1.803142e-01	ci right 1.871226e-01	k: 9185	n:50000
KS ci ratio: 1.782476e-01	ci left: 8.725652e-03	ci right 1.045200e-02	k: 478	n:50000
AKD1   50000 perm   16 sec   (3145 perm/sec)   p_kst 9.560000e-03   p_cons 1.837000e-01   p_joint 1.446000e-02

Joint ci ratio: 1.087392e-01	ci left: 2.004602e-02	ci right 2.236728e-02	k: 1271	n:60000
Cons ci ratio: 3.374423e-02	ci left: 1.805092e-01	ci right 1.867215e-01	k: 11016	n:60000
KS ci ratio: 1.628318e-01	ci left: 8.787262e-03	ci right 1.036072e-02	k: 573	n:60000
AKD1   60000 perm   19 sec   (3094 perm/sec)   p_kst 9.550000e-03   p_cons 1.836000e-01   p_joint 2.118333e-02

Joint ci ratio: 1.147417e-01	ci left: 1.545819e-02	ci right 1.735363e-02	k: 1147	n:70000
Cons ci ratio: 3.118193e-02	ci left: 1.813059e-01	ci right 1.870631e-01	k: 12892	n:70000
KS ci ratio: 1.504886e-01	ci left: 8.877152e-03	ci right 1.033536e-02	k: 671	n:70000
AKD1   70000 perm   23 sec   (3040 perm/sec)   p_kst 9.585714e-03   p_cons 1.841714e-01   p_joint 1.638571e-02

Joint ci ratio: 1.055063e-01	ci left: 1.606681e-02	ci right 1.786847e-02	k: 1356	n:80000
Cons ci ratio: 2.910011e-02	ci left: 1.821902e-01	ci right 1.875827e-01	k: 14790	n:80000
KS ci ratio: 1.389539e-01	ci left: 9.165161e-03	ci right 1.054573e-02	k: 787	n:80000
AKD1   80000 perm   27 sec   (2974 perm/sec)   p_kst 9.837500e-03   p_cons 1.848750e-01   p_joint 1.695000e-02

Joint ci ratio: 1.022186e-01	ci left: 1.525530e-02	ci right 1.690943e-02	k: 1446	n:90000
Cons ci ratio: 2.736715e-02	ci left: 1.830978e-01	ci right 1.881892e-01	k: 16707	n:90000
KS ci ratio: 1.320262e-01	ci left: 9.059220e-03	ci right 1.035046e-02	k: 872	n:90000
AKD1   90000 perm   31 sec   (2935 perm/sec)   p_kst 9.688889e-03   p_cons 1.856333e-01   p_joint 1.606667e-02

Joint ci ratio: 9.882534e-02	ci left: 1.472393e-02	ci right 1.626436e-02	k: 1548	n:100000
Cons ci ratio: 2.598635e-02	ci left: 1.829557e-01	ci right 1.877826e-01	k: 18536	n:100000
KS ci ratio: 1.255783e-01	ci left: 9.043659e-03	ci right 1.026503e-02	k: 964	n:100000
AKD1   100000 perm   35 sec   (2892 perm/sec)   p_kst 9.640000e-03   p_cons 1.853600e-01   p_joint 1.548000e-02

Joint ci ratio: 9.408339e-02	ci left: 1.480489e-02	ci right 1.627536e-02	k: 1708	n:110000
Cons ci ratio: 2.404491e-02	ci left: 1.922549e-01	ci right 1.969430e-01	k: 21405	n:110000
KS ci ratio: 1.206850e-01	ci left: 8.926351e-03	ci right 1.008155e-02	k: 1044	n:110000
AKD1   110000 perm   39 sec   (2849 perm/sec)   p_kst 9.490909e-03   p_cons 1.945909e-01   p_joint 1.552727e-02

Joint ci ratio: 8.750018e-02	ci left: 1.572970e-02	ci right 1.717713e-02	k: 1973	n:120000
Cons ci ratio: 2.305128e-02	ci left: 1.919485e-01	ci right 1.964330e-01	k: 23302	n:120000
KS ci ratio: 1.102059e-01	ci left: 9.858016e-03	ci right 1.101583e-02	k: 1251	n:120000
AKD1   120000 perm   43 sec   (2760 perm/sec)   p_kst 1.042500e-02   p_cons 1.941833e-01   p_joint 1.644167e-02

Joint ci ratio: 8.680052e-02	ci left: 1.477525e-02	ci right 1.612342e-02	k: 2007	n:130000
Cons ci ratio: 2.342518e-02	ci left: 1.751507e-01	ci right 1.793099e-01	k: 23039	n:130000
KS ci ratio: 1.056596e-01	ci left: 9.923040e-03	ci right 1.103742e-02	k: 1361	n:130000
AKD1   130000 perm   48 sec   (2707 perm/sec)   p_kst 1.046923e-02   p_cons 1.772231e-01   p_joint 1.543846e-02

Joint ci ratio: 8.824165e-02	ci left: 1.328625e-02	ci right 1.451971e-02	k: 1945	n:140000
Cons ci ratio: 2.255501e-02	ci left: 1.754590e-01	ci right 1.794687e-01	k: 24844	n:140000
KS ci ratio: 1.018431e-01	ci left: 9.937838e-03	ci right 1.101115e-02	k: 1465	n:140000
AKD1   140000 perm   53 sec   (2661 perm/sec)   p_kst 1.046429e-02   p_cons 1.774571e-01   p_joint 1.389286e-02

Joint ci ratio: 8.876965e-02	ci left: 1.226331e-02	ci right 1.340897e-02	k: 1924	n:150000
Cons ci ratio: 2.178556e-02	ci left: 1.755892e-01	ci right 1.794633e-01	k: 26628	n:150000
KS ci ratio: 9.831757e-02	ci left: 9.970804e-03	ci right 1.100825e-02	k: 1572	n:150000
AKD1   150000 perm   57 sec   (2625 perm/sec)   p_kst 1.048000e-02   p_cons 1.775200e-01   p_joint 1.282667e-02

Outputting figure to mutsig2_images.part000000000006/AKD1.4_5908_150000_0.01048_0.17752_0.012827.png
                gene_name: AKD1
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0100 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 37 percent done.
AKIRIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.352500e-02	ci left: 7.264344e-01	ci right 7.438284e-01	k: 7352	n:10000
Cons ci ratio: 5.141594e-02	ci left: 3.580403e-01	ci right 3.770370e-01	k: 3675	n:10000
KS ci ratio: 4.852541e-03	ci left: 9.824212e-01	ci right 9.872903e-01	k: 9850	n:10000
AKIRIN2   10000 perm   2 sec   (5362 perm/sec)   p_kst 9.850000e-01   p_cons 3.675000e-01   p_joint 7.352000e-01

Outputting figure to mutsig2_images.part000000000006/AKIRIN2.4_632_10000_0.985_0.3675_0.7352.png
                gene_name: AKIRIN2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 39 percent done.
AKR1C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.240477e-01	ci left: 2.636581e-02	ci right 3.311184e-02	k: 296	n:10000
Cons ci ratio: 5.192847e-02	ci left: 3.534668e-01	ci right 3.724131e-01	k: 3629	n:10000
KS ci ratio: 2.696112e-01	ci left: 1.790635e-02	ci right 2.357766e-02	k: 206	n:10000
AKR1C2   10000 perm   2 sec   (4735 perm/sec)   p_kst 2.060000e-02   p_cons 3.629000e-01   p_joint 2.960000e-02

Joint ci ratio: 9.027595e-02	ci left: 8.224775e-02	ci right 9.007306e-02	k: 1722	n:20000
Cons ci ratio: 3.657636e-02	ci left: 3.580739e-01	ci right 3.714655e-01	k: 7295	n:20000
KS ci ratio: 1.937784e-01	ci left: 1.810475e-02	ci right 2.203652e-02	k: 400	n:20000
AKR1C2   20000 perm   5 sec   (4424 perm/sec)   p_kst 2.000000e-02   p_cons 3.647500e-01   p_joint 8.610000e-02

Joint ci ratio: 9.991828e-02	ci left: 4.635659e-02	ci right 5.126460e-02	k: 1463	n:30000
Cons ci ratio: 2.903607e-02	ci left: 3.724087e-01	ci right 3.834149e-01	k: 11337	n:30000
KS ci ratio: 1.603418e-01	ci left: 1.796530e-02	ci right 2.112871e-02	k: 585	n:30000
AKR1C2   30000 perm   7 sec   (4192 perm/sec)   p_kst 1.950000e-02   p_cons 3.779000e-01   p_joint 4.876667e-02

Joint ci ratio: 8.890390e-02	ci left: 4.428569e-02	ci right 4.843049e-02	k: 1853	n:40000
Cons ci ratio: 2.516245e-02	ci left: 3.728457e-01	ci right 3.823721e-01	k: 15104	n:40000
KS ci ratio: 1.377263e-01	ci left: 1.848136e-02	ci right 2.123896e-02	k: 793	n:40000
AKR1C2   40000 perm   9 sec   (4249 perm/sec)   p_kst 1.982500e-02   p_cons 3.776000e-01   p_joint 4.632500e-02

Joint ci ratio: 8.665222e-02	ci left: 3.761364e-02	ci right 4.104011e-02	k: 1965	n:50000
Cons ci ratio: 2.243170e-02	ci left: 3.749044e-01	ci right 3.834296e-01	k: 18958	n:50000
KS ci ratio: 1.236000e-01	ci left: 1.849986e-02	ci right 2.095634e-02	k: 985	n:50000
AKR1C2   50000 perm   12 sec   (4154 perm/sec)   p_kst 1.970000e-02   p_cons 3.791600e-01   p_joint 3.930000e-02

Joint ci ratio: 7.033830e-02	ci left: 4.748289e-02	ci right 5.096087e-02	k: 2952	n:60000
Cons ci ratio: 2.049015e-02	ci left: 3.749827e-01	ci right 3.827624e-01	k: 22732	n:60000
KS ci ratio: 1.122613e-01	ci left: 1.879747e-02	ci right 2.104931e-02	k: 1194	n:60000
AKR1C2   60000 perm   15 sec   (4095 perm/sec)   p_kst 1.990000e-02   p_cons 3.788667e-01   p_joint 4.920000e-02

Joint ci ratio: 6.578786e-02	ci left: 4.668116e-02	ci right 4.987071e-02	k: 3378	n:70000
Cons ci ratio: 1.898276e-02	ci left: 3.749620e-01	ci right 3.821623e-01	k: 26499	n:70000
KS ci ratio: 1.031503e-01	ci left: 1.917060e-02	ci right 2.126944e-02	k: 1414	n:70000
AKR1C2   70000 perm   17 sec   (4075 perm/sec)   p_kst 2.020000e-02   p_cons 3.785571e-01   p_joint 4.825714e-02

Joint ci ratio: 5.087372e-02	ci left: 6.732720e-02	ci right 7.085413e-02	k: 5526	n:80000
Cons ci ratio: 1.775755e-02	ci left: 3.751747e-01	ci right 3.819091e-01	k: 30283	n:80000
KS ci ratio: 9.643184e-02	ci left: 1.926072e-02	ci right 2.122429e-02	k: 1618	n:80000
AKR1C2   80000 perm   20 sec   (4035 perm/sec)   p_kst 2.022500e-02   p_cons 3.785375e-01   p_joint 6.907500e-02

Outputting figure to mutsig2_images.part000000000006/AKR1C2.4_1063_80000_0.020225_0.37854_0.069075.png
                gene_name: AKR1C2
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.071 

Current progress: 41 percent done.
ALB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.085544e-02	ci left: 6.077911e-01	ci right 6.269405e-01	k: 6174	n:10000
Cons ci ratio: 2.482064e-02	ci left: 7.048299e-01	ci right 7.226454e-01	k: 7138	n:10000
KS ci ratio: 3.729637e-02	ci left: 5.149562e-01	ci right 5.346293e-01	k: 5248	n:10000
ALB   10000 perm   2 sec   (5236 perm/sec)   p_kst 5.248000e-01   p_cons 7.138000e-01   p_joint 6.174000e-01

Outputting figure to mutsig2_images.part000000000006/ALB.4_1886_10000_0.5248_0.7138_0.6174.png
                gene_name: ALB
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 42 percent done.
ALDH1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.363978e-02	ci left: 7.245152e-01	ci right 7.419487e-01	k: 7333	n:10000
Cons ci ratio: 4.924285e-02	ci left: 3.782339e-01	ci right 3.974315e-01	k: 3878	n:10000
KS ci ratio: 3.656271e-02	ci left: 5.248649e-01	ci right 5.445149e-01	k: 5347	n:10000
ALDH1A1   10000 perm   2 sec   (5768 perm/sec)   p_kst 5.347000e-01   p_cons 3.878000e-01   p_joint 7.333000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH1A1.4_1558_10000_0.5347_0.3878_0.7333.png
                gene_name: ALDH1A1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 44 percent done.
ALDH3A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.758897e-02	ci left: 5.110539e-01	ci right 5.307340e-01	k: 5209	n:10000
Cons ci ratio: 3.730385e-02	ci left: 5.148561e-01	ci right 5.345295e-01	k: 5247	n:10000
KS ci ratio: 5.415671e-02	ci left: 3.343879e-01	ci right 3.531032e-01	k: 3437	n:10000
ALDH3A2   10000 perm   2 sec   (5009 perm/sec)   p_kst 3.437000e-01   p_cons 5.247000e-01   p_joint 5.209000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH3A2.4_1586_10000_0.3437_0.5247_0.5209.png
                gene_name: ALDH3A2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 46 percent done.
ALDH5A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.388548e-02	ci left: 4.339301e-01	ci right 4.535027e-01	k: 4437	n:10000
Cons ci ratio: 3.336069e-02	ci left: 5.701540e-01	ci right 5.895994e-01	k: 5799	n:10000
KS ci ratio: 7.254263e-02	ci left: 2.177347e-01	ci right 2.342252e-01	k: 2259	n:10000
ALDH5A1   10000 perm   2 sec   (5445 perm/sec)   p_kst 2.259000e-01   p_cons 5.799000e-01   p_joint 4.437000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH5A1.4_1691_10000_0.2259_0.5799_0.4437.png
                gene_name: ALDH5A1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 47 percent done.
ALDH6A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.642761e-02	ci left: 4.064147e-01	ci right 4.258341e-01	k: 4161	n:10000
Cons ci ratio: 1.152409e-01	ci left: 9.769325e-02	ci right 1.097387e-01	k: 1036	n:10000
KS ci ratio: 4.265357e-02	ci left: 4.479986e-01	ci right 4.676260e-01	k: 4578	n:10000
ALDH6A1   10000 perm   2 sec   (5678 perm/sec)   p_kst 4.578000e-01   p_cons 1.036000e-01   p_joint 4.161000e-01

Joint ci ratio: 5.336749e-02	ci left: 2.067487e-01	ci right 2.181350e-01	k: 4248	n:20000
Cons ci ratio: 7.618347e-02	ci left: 1.124288e-01	ci right 1.213829e-01	k: 2337	n:20000
KS ci ratio: 3.015404e-02	ci left: 4.510266e-01	ci right 4.648857e-01	k: 9159	n:20000
ALDH6A1   20000 perm   5 sec   (4274 perm/sec)   p_kst 4.579500e-01   p_cons 1.168500e-01   p_joint 2.124000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH6A1.4_1656_20000_0.45795_0.11685_0.2124.png
                gene_name: ALDH6A1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 49 percent done.
ALDH8A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.174454e-02	ci left: 7.562597e-01	ci right 7.729859e-01	k: 7647	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ALDH8A1   10000 perm   2 sec   (5017 perm/sec)   p_kst 1   p_cons 7.647000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALDH8A1.4_1492_10000_1_0.7647_1.png
                gene_name: ALDH8A1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
ALOX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.849801e-02	ci left: 2.381767e-01	ci right 2.551711e-01	k: 2466	n:10000
Cons ci ratio: 2.816456e-02	ci left: 6.501168e-01	ci right 6.687903e-01	k: 6595	n:10000
KS ci ratio: 9.247904e-02	ci left: 1.452116e-01	ci right 1.593916e-01	k: 1522	n:10000
ALOX5   10000 perm   2 sec   (4812 perm/sec)   p_kst 1.522000e-01   p_cons 6.595000e-01   p_joint 2.466000e-01

Outputting figure to mutsig2_images.part000000000006/ALOX5.4_2081_10000_0.1522_0.6595_0.2466.png
                gene_name: ALOX5
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 53 percent done.
ALOXE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.169081e-02	ci left: 5.950381e-01	ci right 6.143009e-01	k: 6047	n:10000
Cons ci ratio: 4.752422e-02	ci left: 3.951583e-01	ci right 4.144971e-01	k: 4048	n:10000
KS ci ratio: 4.936750e-02	ci left: 3.770397e-01	ci right 3.962264e-01	k: 3866	n:10000
ALOXE3   10000 perm   2 sec   (5284 perm/sec)   p_kst 3.866000e-01   p_cons 4.048000e-01   p_joint 6.047000e-01

Outputting figure to mutsig2_images.part000000000006/ALOXE3.4_2596_10000_0.3866_0.4048_0.6047.png
                gene_name: ALOXE3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 54 percent done.
AKAP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.946150e-02	ci left: 4.867526e-01	ci right 5.064494e-01	k: 4966	n:10000
KS ci ratio: 2.380295e-02	ci left: 7.217883e-01	ci right 7.392772e-01	k: 7306	n:10000
AKAP7   10000 perm   2 sec   (6254 perm/sec)   p_kst 7.306000e-01   p_cons 4.966000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/AKAP7.3_1135_10000_0.7306_0.4966_1.png
                gene_name: AKAP7
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
AKAP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.083070e-02	ci left: 1.826474e-01	ci right 1.981334e-01	k: 1903	n:10000
Cons ci ratio: 8.098835e-02	ci left: 1.820569e-01	ci right 1.975242e-01	k: 1897	n:10000
KS ci ratio: 7.430771e-02	ci left: 2.095461e-01	ci right 2.258187e-01	k: 2176	n:10000
AKAP8   10000 perm   2 sec   (5669 perm/sec)   p_kst 2.176000e-01   p_cons 1.897000e-01   p_joint 1.903000e-01

Outputting figure to mutsig2_images.part000000000006/AKAP8.3_2135_10000_0.2176_0.1897_0.1903.png
                gene_name: AKAP8
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 58 percent done.
AKNAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.237935e-02	ci left: 2.741854e-01	ci right 2.919411e-01	k: 2830	n:10000
Cons ci ratio: 4.864673e-02	ci left: 3.840068e-01	ci right 4.032552e-01	k: 3936	n:10000
KS ci ratio: 6.051180e-02	ci left: 2.865679e-01	ci right 3.045513e-01	k: 2955	n:10000
AKNAD1   10000 perm   2 sec   (4474 perm/sec)   p_kst 2.955000e-01   p_cons 3.936000e-01   p_joint 2.830000e-01

Outputting figure to mutsig2_images.part000000000006/AKNAD1.3_2571_10000_0.2955_0.3936_0.283.png
                gene_name: AKNAD1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 59 percent done.
AKR1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.357136e-01	ci left: 7.175179e-02	ci right 8.229618e-02	k: 769	n:10000
Cons ci ratio: 6.103901e-02	ci left: 2.830009e-01	ci right 3.009204e-01	k: 2919	n:10000
KS ci ratio: 1.898176e-01	ci left: 3.700694e-02	ci right 4.486335e-02	k: 408	n:10000
AKR1B1   10000 perm   2 sec   (6353 perm/sec)   p_kst 4.080000e-02   p_cons 2.919000e-01   p_joint 7.690000e-02

Joint ci ratio: 1.351748e-01	ci left: 3.761647e-02	ci right 4.311819e-02	k: 806	n:20000
Cons ci ratio: 4.330788e-02	ci left: 2.842636e-01	ci right 2.968974e-01	k: 5811	n:20000
KS ci ratio: 1.333766e-01	ci left: 3.863255e-02	ci right 4.420178e-02	k: 827	n:20000
AKR1B1   20000 perm   4 sec   (5463 perm/sec)   p_kst 4.135000e-02   p_cons 2.905500e-01   p_joint 4.030000e-02

Joint ci ratio: 1.073342e-01	ci left: 4.027750e-02	ci right 4.487829e-02	k: 1276	n:30000
Cons ci ratio: 3.417999e-02	ci left: 2.995603e-01	ci right 3.100108e-01	k: 9143	n:30000
KS ci ratio: 1.097345e-01	ci left: 3.855687e-02	ci right 4.306594e-02	k: 1223	n:30000
AKR1B1   30000 perm   6 sec   (4922 perm/sec)   p_kst 4.076667e-02   p_cons 3.047667e-01   p_joint 4.253333e-02

Joint ci ratio: 7.868273e-02	ci left: 5.612158e-02	ci right 6.074278e-02	k: 2336	n:40000
Cons ci ratio: 2.959028e-02	ci left: 3.004152e-01	ci right 3.094631e-01	k: 12197	n:40000
KS ci ratio: 9.488183e-02	ci left: 3.897995e-02	ci right 4.288705e-02	k: 1636	n:40000
AKR1B1   40000 perm   8 sec   (4715 perm/sec)   p_kst 4.090000e-02   p_cons 3.049250e-01   p_joint 5.840000e-02

Outputting figure to mutsig2_images.part000000000006/AKR1B1.3_991_40000_0.0409_0.30493_0.0584.png
                gene_name: AKR1B1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.061 

Current progress: 61 percent done.
AKR1B15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.087408e-01	ci left: 1.087125e-01	ci right 1.213128e-01	k: 1149	n:10000
Cons ci ratio: 1.021285e-01	ci left: 1.218044e-01	ci right 1.350129e-01	k: 1283	n:10000
KS ci ratio: 9.549380e-02	ci left: 1.372712e-01	ci right 1.511368e-01	k: 1441	n:10000
AKR1B15   10000 perm   2 sec   (5801 perm/sec)   p_kst 1.441000e-01   p_cons 1.283000e-01   p_joint 1.149000e-01

Joint ci ratio: 8.535257e-02	ci left: 9.131366e-02	ci right 9.950440e-02	k: 1907	n:20000
Cons ci ratio: 6.830217e-02	ci left: 1.365491e-01	ci right 1.462554e-01	k: 2827	n:20000
KS ci ratio: 6.745712e-02	ci left: 1.395556e-01	ci right 1.493481e-01	k: 2888	n:20000
AKR1B15   20000 perm   4 sec   (4648 perm/sec)   p_kst 1.444000e-01   p_cons 1.413500e-01   p_joint 9.535000e-02

Outputting figure to mutsig2_images.part000000000006/AKR1B15.3_1075_20000_0.1444_0.14135_0.09535.png
                gene_name: AKR1B15
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.100 

Current progress: 63 percent done.
AKR1C4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.978760e-02	ci left: 6.243702e-01	ci right 6.433517e-01	k: 6339	n:10000
Cons ci ratio: 2.627951e-02	ci left: 6.807302e-01	ci right 6.989591e-01	k: 6899	n:10000
KS ci ratio: 2.944204e-02	ci left: 6.297987e-01	ci right 6.487201e-01	k: 6393	n:10000
AKR1C4   10000 perm   2 sec   (6255 perm/sec)   p_kst 6.393000e-01   p_cons 6.899000e-01   p_joint 6.339000e-01

Outputting figure to mutsig2_images.part000000000006/AKR1C4.3_1008_10000_0.6393_0.6899_0.6339.png
                gene_name: AKR1C4
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 64 percent done.
AKT1S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.963549e-02	ci left: 4.845536e-01	ci right 5.042496e-01	k: 4944	n:10000
Cons ci ratio: 9.688766e-03	ci left: 9.377569e-01	ci right 9.469833e-01	k: 9425	n:10000
KS ci ratio: 5.315188e-02	ci left: 3.428323e-01	ci right 3.616539e-01	k: 3522	n:10000
AKT1S1   10000 perm   2 sec   (5742 perm/sec)   p_kst 3.522000e-01   p_cons 9.425000e-01   p_joint 4.944000e-01

Outputting figure to mutsig2_images.part000000000006/AKT1S1.3_787_10000_0.3522_0.9425_0.4944.png
                gene_name: AKT1S1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 66 percent done.
ALDH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.800553e-02	ci left: 8.182217e-01	ci right 8.331881e-01	k: 8258	n:10000
Cons ci ratio: 3.797479e-02	ci left: 5.059517e-01	ci right 5.256391e-01	k: 5158	n:10000
KS ci ratio: 3.946939e-02	ci left: 4.866526e-01	ci right 5.063494e-01	k: 4965	n:10000
ALDH2   10000 perm   2 sec   (5431 perm/sec)   p_kst 4.965000e-01   p_cons 5.158000e-01   p_joint 8.258000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH2.3_1606_10000_0.4965_0.5158_0.8258.png
                gene_name: ALDH2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 68 percent done.
ALDH3B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.642256e-01	ci left: 4.945836e-02	ci right 5.840374e-02	k: 538	n:10000
Cons ci ratio: 2.108706e-01	ci left: 2.986994e-02	ci right 3.700523e-02	k: 333	n:10000
KS ci ratio: 1.097680e-01	ci left: 1.068582e-01	ci right 1.193681e-01	k: 1130	n:10000
ALDH3B1   10000 perm   2 sec   (5419 perm/sec)   p_kst 1.130000e-01   p_cons 3.330000e-02   p_joint 5.380000e-02

Joint ci ratio: 1.901799e-01	ci left: 1.881935e-02	ci right 2.282166e-02	k: 415	n:20000
Cons ci ratio: 1.478567e-01	ci left: 3.143485e-02	ci right 3.650181e-02	k: 678	n:20000
KS ci ratio: 7.822483e-02	ci left: 1.071696e-01	ci right 1.159437e-01	k: 2230	n:20000
ALDH3B1   20000 perm   4 sec   (4509 perm/sec)   p_kst 1.115000e-01   p_cons 3.390000e-02   p_joint 2.075000e-02

Joint ci ratio: 1.036178e-01	ci left: 4.316924e-02	ci right 4.791927e-02	k: 1365	n:30000
Cons ci ratio: 1.219389e-01	ci left: 3.126601e-02	ci right 3.535836e-02	k: 998	n:30000
KS ci ratio: 6.384387e-02	ci left: 1.080580e-01	ci right 1.152174e-01	k: 3348	n:30000
ALDH3B1   30000 perm   7 sec   (4426 perm/sec)   p_kst 1.116000e-01   p_cons 3.326667e-02   p_joint 4.550000e-02

Joint ci ratio: 1.065160e-01	ci left: 3.100294e-02	ci right 3.451532e-02	k: 1309	n:40000
Cons ci ratio: 1.054798e-01	ci left: 3.161190e-02	ci right 3.515627e-02	k: 1334	n:40000
KS ci ratio: 5.554528e-02	ci left: 1.076410e-01	ci right 1.138156e-01	k: 4428	n:40000
ALDH3B1   40000 perm   9 sec   (4374 perm/sec)   p_kst 1.107000e-01   p_cons 3.335000e-02   p_joint 3.272500e-02

Joint ci ratio: 9.113710e-02	ci left: 3.405157e-02	ci right 3.732262e-02	k: 1783	n:50000
Cons ci ratio: 9.451282e-02	ci left: 3.168587e-02	ci right 3.484862e-02	k: 1662	n:50000
KS ci ratio: 4.921889e-02	ci left: 1.098023e-01	ci right 1.153628e-01	k: 5628	n:50000
ALDH3B1   50000 perm   12 sec   (4327 perm/sec)   p_kst 1.125600e-01   p_cons 3.324000e-02   p_joint 3.566000e-02

Outputting figure to mutsig2_images.part000000000006/ALDH3B1.3_1440_50000_0.11256_0.03324_0.03566.png
                gene_name: ALDH3B1
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.037 

Current progress: 69 percent done.
ALDH4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.051180e-02	ci left: 2.865679e-01	ci right 3.045513e-01	k: 2955	n:10000
Cons ci ratio: 7.916568e-02	ci left: 1.890467e-01	ci right 2.047302e-01	k: 1968	n:10000
KS ci ratio: 8.988259e-02	ci left: 1.525700e-01	ci right 1.670288e-01	k: 1597	n:10000
ALDH4A1   10000 perm   2 sec   (5570 perm/sec)   p_kst 1.597000e-01   p_cons 1.968000e-01   p_joint 2.955000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH4A1.3_1752_10000_0.1597_0.1968_0.2955.png
                gene_name: ALDH4A1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 71 percent done.
ALDH7A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.915936e-02	ci left: 2.959840e-01	ci right 3.141297e-01	k: 3050	n:10000
Cons ci ratio: 1.251018e-01	ci left: 8.378084e-02	ci right 9.505967e-02	k: 893	n:10000
KS ci ratio: 3.183681e-02	ci left: 5.928296e-01	ci right 6.121107e-01	k: 6025	n:10000
ALDH7A1   10000 perm   2 sec   (5772 perm/sec)   p_kst 6.025000e-01   p_cons 8.930000e-02   p_joint 3.050000e-01

Joint ci ratio: 4.347125e-02	ci left: 2.827238e-01	ci right 2.953376e-01	k: 5780	n:20000
Cons ci ratio: 8.865284e-02	ci left: 8.508867e-02	ci right 9.303127e-02	k: 1780	n:20000
KS ci ratio: 2.269460e-02	ci left: 5.918178e-01	ci right 6.054536e-01	k: 11973	n:20000
ALDH7A1   20000 perm   4 sec   (5122 perm/sec)   p_kst 5.986500e-01   p_cons 8.900000e-02   p_joint 2.890000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH7A1.3_1692_20000_0.59865_0.089_0.289.png
                gene_name: ALDH7A1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 73 percent done.
ALDOC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.034734e-01	ci left: 1.189689e-01	ci right 1.320501e-01	k: 1254	n:10000
Cons ci ratio: 1.377594e-01	ci left: 6.971834e-02	ci right 8.013090e-02	k: 748	n:10000
KS ci ratio: 9.499402e-02	ci left: 1.385451e-01	ci right 1.524621e-01	k: 1454	n:10000
ALDOC   10000 perm   2 sec   (6296 perm/sec)   p_kst 1.454000e-01   p_cons 7.480000e-02   p_joint 1.254000e-01

Joint ci ratio: 9.067967e-02	ci left: 8.156220e-02	ci right 8.935881e-02	k: 1708	n:20000
Cons ci ratio: 9.454337e-02	ci left: 7.539590e-02	ci right 8.292699e-02	k: 1582	n:20000
KS ci ratio: 6.613805e-02	ci left: 1.444364e-01	ci right 1.543658e-01	k: 2987	n:20000
ALDOC   20000 perm   4 sec   (5417 perm/sec)   p_kst 1.493500e-01   p_cons 7.910000e-02   p_joint 8.540000e-02

Outputting figure to mutsig2_images.part000000000006/ALDOC.3_1127_20000_0.14935_0.0791_0.0854.png
                gene_name: ALDOC
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.089 

Current progress: 75 percent done.
ALG10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.495838e-02	ci left: 3.278334e-01	ci right 3.464615e-01	k: 3371	n:10000
Cons ci ratio: 1.474582e-01	ci left: 6.111415e-02	ci right 7.094050e-02	k: 659	n:10000
KS ci ratio: 4.249928e-02	ci left: 4.497952e-01	ci right 4.694284e-01	k: 4596	n:10000
ALG10   10000 perm   2 sec   (5450 perm/sec)   p_kst 4.596000e-01   p_cons 6.590000e-02   p_joint 3.371000e-01

Joint ci ratio: 7.331842e-02	ci left: 1.204463e-01	ci right 1.296630e-01	k: 2500	n:20000
Cons ci ratio: 1.042709e-01	ci left: 6.254854e-02	ci right 6.947828e-02	k: 1319	n:20000
KS ci ratio: 2.956560e-02	ci left: 4.608150e-01	ci right 4.746944e-01	k: 9355	n:20000
ALG10   20000 perm   4 sec   (4768 perm/sec)   p_kst 4.677500e-01   p_cons 6.595000e-02   p_joint 1.250000e-01

Joint ci ratio: 4.789982e-02	ci left: 1.781104e-01	ci right 1.868845e-01	k: 5474	n:30000
Cons ci ratio: 8.425248e-02	ci left: 6.445757e-02	ci right 7.015990e-02	k: 2018	n:30000
KS ci ratio: 2.403367e-02	ci left: 4.643054e-01	ci right 4.756337e-01	k: 14099	n:30000
ALG10   30000 perm   7 sec   (4527 perm/sec)   p_kst 4.699667e-01   p_cons 6.726667e-02   p_joint 1.824667e-01

Outputting figure to mutsig2_images.part000000000006/ALG10.3_1434_30000_0.46997_0.067267_0.18247.png
                gene_name: ALG10
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 76 percent done.
ALG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.266640e-01	ci left: 8.183830e-02	ci right 9.300341e-02	k: 873	n:10000
Cons ci ratio: 1.666916e-01	ci left: 4.801742e-02	ci right 5.684561e-02	k: 523	n:10000
KS ci ratio: 7.468054e-02	ci left: 2.078695e-01	ci right 2.240963e-01	k: 2159	n:10000
ALG2   10000 perm   2 sec   (6126 perm/sec)   p_kst 2.159000e-01   p_cons 5.230000e-02   p_joint 8.730000e-02

Joint ci ratio: 1.112477e-01	ci left: 5.518946e-02	ci right 6.173965e-02	k: 1168	n:20000
Cons ci ratio: 1.160139e-01	ci left: 5.085900e-02	ci right 5.717145e-02	k: 1079	n:20000
KS ci ratio: 5.229085e-02	ci left: 2.135816e-01	ci right 2.251001e-01	k: 4386	n:20000
ALG2   20000 perm   4 sec   (5320 perm/sec)   p_kst 2.193000e-01   p_cons 5.395000e-02   p_joint 5.840000e-02

Joint ci ratio: 7.420644e-02	ci left: 8.193338e-02	ci right 8.828057e-02	k: 2552	n:30000
Cons ci ratio: 9.309663e-02	ci left: 5.319646e-02	ci right 5.842331e-02	k: 1673	n:30000
KS ci ratio: 4.290641e-02	ci left: 2.129748e-01	ci right 2.223466e-01	k: 6529	n:30000
ALG2   30000 perm   6 sec   (5038 perm/sec)   p_kst 2.176333e-01   p_cons 5.576667e-02   p_joint 8.506667e-02

Outputting figure to mutsig2_images.part000000000006/ALG2.3_1259_30000_0.21763_0.055767_0.085067.png
                gene_name: ALG2
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.088 

Current progress: 78 percent done.
ALG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.025626e-02	ci left: 9.310246e-01	ci right 9.407196e-01	k: 9360	n:10000
Cons ci ratio: 6.022247e-02	ci left: 2.885499e-01	ci right 3.065682e-01	k: 2975	n:10000
KS ci ratio: 1.415472e-02	ci left: 8.782779e-01	ci right 8.908971e-01	k: 8847	n:10000
ALG5   10000 perm   2 sec   (6381 perm/sec)   p_kst 8.847000e-01   p_cons 2.975000e-01   p_joint 9.360000e-01

Outputting figure to mutsig2_images.part000000000006/ALG5.3_1015_10000_0.8847_0.2975_0.936.png
                gene_name: ALG5
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 80 percent done.
ALG6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.577795e-02	ci left: 2.030380e-01	ci right 2.191306e-01	k: 2110	n:10000
Cons ci ratio: 1.835874e-01	ci left: 3.958555e-02	ci right 4.768301e-02	k: 435	n:10000
KS ci ratio: 4.884086e-02	ci left: 3.821155e-01	ci right 4.013476e-01	k: 3917	n:10000
ALG6   10000 perm   2 sec   (5448 perm/sec)   p_kst 3.917000e-01   p_cons 4.350000e-02   p_joint 2.110000e-01

Joint ci ratio: 8.009590e-02	ci left: 1.026501e-01	ci right 1.112645e-01	k: 2138	n:20000
Cons ci ratio: 1.329584e-01	ci left: 3.887454e-02	ci right 4.445971e-02	k: 832	n:20000
KS ci ratio: 3.432264e-02	ci left: 3.879166e-01	ci right 4.015140e-01	k: 7894	n:20000
ALG6   20000 perm   4 sec   (5020 perm/sec)   p_kst 3.947000e-01   p_cons 4.160000e-02   p_joint 1.069000e-01

Joint ci ratio: 4.777711e-02	ci left: 1.788699e-01	ci right 1.876582e-01	k: 5497	n:30000
Cons ci ratio: 1.064235e-01	ci left: 4.095956e-02	ci right 4.559608e-02	k: 1297	n:30000
KS ci ratio: 2.799007e-02	ci left: 3.897612e-01	ci right 4.008591e-01	k: 11859	n:30000
ALG6   30000 perm   6 sec   (4786 perm/sec)   p_kst 3.953000e-01   p_cons 4.323333e-02   p_joint 1.832333e-01

Joint ci ratio: 4.678546e-02	ci left: 1.457958e-01	ci right 1.528052e-01	k: 5971	n:40000
Cons ci ratio: 9.176932e-02	ci left: 4.161954e-02	ci right 4.564705e-02	k: 1744	n:40000
KS ci ratio: 2.427349e-02	ci left: 3.898554e-01	ci right 3.994599e-01	k: 15786	n:40000
ALG6   40000 perm   9 sec   (4652 perm/sec)   p_kst 3.946500e-01   p_cons 4.360000e-02   p_joint 1.492750e-01

Outputting figure to mutsig2_images.part000000000006/ALG6.3_1580_40000_0.39465_0.0436_0.14927.png
                gene_name: ALG6
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 81 percent done.
AKR1C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.560377e-02	ci left: 5.380825e-01	ci right 5.576896e-01	k: 5479	n:10000
Cons ci ratio: 2.661776e-02	ci left: 6.751883e-01	ci right 6.935042e-01	k: 6844	n:10000
KS ci ratio: 5.049971e-02	ci left: 3.663941e-01	ci right 3.854782e-01	k: 3759	n:10000
AKR1C3   10000 perm   2 sec   (6529 perm/sec)   p_kst 3.759000e-01   p_cons 6.844000e-01   p_joint 5.479000e-01

Outputting figure to mutsig2_images.part000000000006/AKR1C3.2_1008_10000_0.3759_0.6844_0.5479.png
                gene_name: AKR1C3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 83 percent done.
AKT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.749511e-01	ci left: 4.360497e-02	ci right 5.206094e-02	k: 477	n:10000
Cons ci ratio: 2.452959e-01	ci left: 2.184098e-02	ci right 2.803999e-02	k: 248	n:10000
KS ci ratio: 2.464460e-02	ci left: 7.077562e-01	ci right 7.255175e-01	k: 7167	n:10000
AKT1   10000 perm   2 sec   (6113 perm/sec)   p_kst 7.167000e-01   p_cons 2.480000e-02   p_joint 4.770000e-02

Joint ci ratio: 1.190142e-01	ci left: 4.838015e-02	ci right 5.455108e-02	k: 1028	n:20000
Cons ci ratio: 1.723925e-01	ci left: 2.302419e-02	ci right 2.741533e-02	k: 503	n:20000
KS ci ratio: 1.774468e-02	ci left: 7.029517e-01	ci right 7.155874e-01	k: 14186	n:20000
AKT1   20000 perm   4 sec   (5310 perm/sec)   p_kst 7.093000e-01   p_cons 2.515000e-02   p_joint 5.140000e-02

Joint ci ratio: 1.111140e-01	ci left: 3.761587e-02	ci right 4.207381e-02	k: 1194	n:30000
Cons ci ratio: 1.415290e-01	ci left: 2.316622e-02	ci right 2.672660e-02	k: 747	n:30000
KS ci ratio: 1.454247e-02	ci left: 7.025837e-01	ci right 7.129093e-01	k: 21233	n:30000
AKT1   30000 perm   6 sec   (5016 perm/sec)   p_kst 7.077667e-01   p_cons 2.490000e-02   p_joint 3.980000e-02

Joint ci ratio: 1.176591e-01	ci left: 2.540924e-02	ci right 2.860992e-02	k: 1079	n:40000
Cons ci ratio: 1.224633e-01	ci left: 2.344356e-02	ci right 2.652593e-02	k: 998	n:40000
KS ci ratio: 1.260156e-02	ci left: 7.030396e-01	ci right 7.119802e-01	k: 28301	n:40000
AKT1   40000 perm   8 sec   (4839 perm/sec)   p_kst 7.075250e-01   p_cons 2.495000e-02   p_joint 2.697500e-02

Joint ci ratio: 8.763119e-02	ci left: 3.679125e-02	ci right 4.018260e-02	k: 1923	n:50000
Cons ci ratio: 1.105260e-01	ci left: 2.318206e-02	ci right 2.591353e-02	k: 1226	n:50000
KS ci ratio: 1.130185e-02	ci left: 7.023863e-01	ci right 7.103897e-01	k: 35320	n:50000
AKT1   50000 perm   11 sec   (4706 perm/sec)   p_kst 7.064000e-01   p_cons 2.452000e-02   p_joint 3.846000e-02

Joint ci ratio: 8.135809e-02	ci left: 3.573247e-02	ci right 3.877917e-02	k: 2234	n:60000
Cons ci ratio: 1.013700e-01	ci left: 2.308265e-02	ci right 2.556365e-02	k: 1458	n:60000
KS ci ratio: 1.034741e-02	ci left: 7.015168e-01	ci right 7.088300e-01	k: 42311	n:60000
AKT1   60000 perm   13 sec   (4594 perm/sec)   p_kst 7.051833e-01   p_cons 2.430000e-02   p_joint 3.723333e-02

Joint ci ratio: 7.210234e-02	ci left: 3.905161e-02	ci right 4.198664e-02	k: 2835	n:70000
Cons ci ratio: 9.368608e-02	ci left: 2.325569e-02	ci right 2.555540e-02	k: 1707	n:70000
KS ci ratio: 9.556765e-03	ci left: 7.027957e-01	ci right 7.095586e-01	k: 49433	n:70000
AKT1   70000 perm   16 sec   (4495 perm/sec)   p_kst 7.061857e-01   p_cons 2.438571e-02   p_joint 4.050000e-02

Outputting figure to mutsig2_images.part000000000006/AKT1.2_1495_70000_0.70619_0.024386_0.0405.png
                gene_name: AKT1
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 85 percent done.
ALCAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.446792e-02	ci left: 4.274473e-01	ci right 4.469893e-01	k: 4372	n:10000
Cons ci ratio: 1.285176e-02	ci left: 8.970314e-01	ci right 9.087327e-01	k: 9030	n:10000
KS ci ratio: 1.160542e-01	ci left: 9.642692e-02	ci right 1.084058e-01	k: 1023	n:10000
ALCAM   10000 perm   2 sec   (6031 perm/sec)   p_kst 1.023000e-01   p_cons 9.030000e-01   p_joint 4.372000e-01

Joint ci ratio: 2.215770e-02	ci left: 6.033000e-01	ci right 6.168680e-01	k: 12202	n:20000
Cons ci ratio: 9.104294e-03	ci left: 8.984580e-01	ci right 9.067245e-01	k: 18053	n:20000
KS ci ratio: 8.213131e-02	ci left: 9.803498e-02	ci right 1.064811e-01	k: 2044	n:20000
ALCAM   20000 perm   4 sec   (5278 perm/sec)   p_kst 1.022000e-01   p_cons 9.026500e-01   p_joint 6.101000e-01

Outputting figure to mutsig2_images.part000000000006/ALCAM.2_1812_20000_0.1022_0.90265_0.6101.png
                gene_name: ALCAM
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 86 percent done.
ALDH16A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.788726e-02	ci left: 1.941685e-01	ci right 2.100054e-01	k: 2020	n:10000
Cons ci ratio: 6.015053e-02	ci left: 2.890454e-01	ci right 3.070724e-01	k: 2980	n:10000
KS ci ratio: 6.578961e-02	ci left: 2.533030e-01	ci right 2.706359e-01	k: 2619	n:10000
ALDH16A1   10000 perm   2 sec   (5554 perm/sec)   p_kst 2.619000e-01   p_cons 2.980000e-01   p_joint 2.020000e-01

Outputting figure to mutsig2_images.part000000000006/ALDH16A1.2_2477_10000_0.2619_0.298_0.202.png
                gene_name: ALDH16A1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 88 percent done.
ALDH3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.613966e-01	ci left: 5.118874e-02	ci right 6.027224e-02	k: 556	n:10000
Cons ci ratio: 2.380421e-01	ci left: 2.325212e-02	ci right 2.962780e-02	k: 263	n:10000
KS ci ratio: 5.596939e-02	ci left: 3.197920e-01	ci right 3.383077e-01	k: 3290	n:10000
ALDH3A1   10000 perm   2 sec   (6045 perm/sec)   p_kst 3.290000e-01   p_cons 2.630000e-02   p_joint 5.560000e-02

Joint ci ratio: 1.365920e-01	ci left: 3.684265e-02	ci right 4.229226e-02	k: 790	n:20000
Cons ci ratio: 1.713490e-01	ci left: 2.331158e-02	ci right 2.772784e-02	k: 509	n:20000
KS ci ratio: 3.936225e-02	ci left: 3.249260e-01	ci right 3.380231e-01	k: 6629	n:20000
ALDH3A1   20000 perm   4 sec   (5257 perm/sec)   p_kst 3.314500e-01   p_cons 2.545000e-02   p_joint 3.950000e-02

Joint ci ratio: 1.486093e-01	ci left: 2.097999e-02	ci right 2.437998e-02	k: 679	n:30000
Cons ci ratio: 1.408546e-01	ci left: 2.339150e-02	ci right 2.696793e-02	k: 754	n:30000
KS ci ratio: 3.204511e-02	ci left: 3.274343e-01	ci right 3.381314e-01	k: 9983	n:30000
ALDH3A1   30000 perm   6 sec   (4948 perm/sec)   p_kst 3.327667e-01   p_cons 2.513333e-02   p_joint 2.263333e-02

Joint ci ratio: 1.325399e-01	ci left: 1.997997e-02	ci right 2.284010e-02	k: 855	n:40000
Cons ci ratio: 1.224633e-01	ci left: 2.344356e-02	ci right 2.652593e-02	k: 998	n:40000
KS ci ratio: 2.778003e-02	ci left: 3.277086e-01	ci right 3.369657e-01	k: 13293	n:40000
ALDH3A1   40000 perm   8 sec   (4753 perm/sec)   p_kst 3.323250e-01   p_cons 2.495000e-02   p_joint 2.137500e-02

Joint ci ratio: 1.054789e-01	ci left: 2.546041e-02	ci right 2.831488e-02	k: 1343	n:50000
Cons ci ratio: 1.099304e-01	ci left: 2.343505e-02	ci right 2.618050e-02	k: 1239	n:50000
KS ci ratio: 2.486458e-02	ci left: 3.278920e-01	ci right 3.361675e-01	k: 16601	n:50000
ALDH3A1   50000 perm   11 sec   (4605 perm/sec)   p_kst 3.320200e-01   p_cons 2.478000e-02   p_joint 2.686000e-02

Joint ci ratio: 9.652890e-02	ci left: 2.545726e-02	ci right 2.805545e-02	k: 1604	n:60000
Cons ci ratio: 1.007349e-01	ci left: 2.337524e-02	ci right 2.587103e-02	k: 1476	n:60000
KS ci ratio: 2.266272e-02	ci left: 3.289463e-01	ci right 3.365032e-01	k: 19963	n:60000
ALDH3A1   60000 perm   13 sec   (4475 perm/sec)   p_kst 3.327167e-01   p_cons 2.460000e-02   p_joint 2.673333e-02

Joint ci ratio: 1.017286e-01	ci left: 1.971374e-02	ci right 2.184053e-02	k: 1453	n:70000
Cons ci ratio: 9.340619e-02	ci left: 2.339528e-02	ci right 2.570150e-02	k: 1717	n:70000
KS ci ratio: 2.100547e-02	ci left: 3.287249e-01	ci right 3.357175e-01	k: 23255	n:70000
ALDH3A1   70000 perm   16 sec   (4362 perm/sec)   p_kst 3.322143e-01   p_cons 2.452857e-02   p_joint 2.075714e-02

Joint ci ratio: 1.023665e-01	ci left: 1.707779e-02	ci right 1.893240e-02	k: 1439	n:80000
Cons ci ratio: 8.708816e-02	ci left: 2.362325e-02	ci right 2.578640e-02	k: 1975	n:80000
KS ci ratio: 1.963460e-02	ci left: 3.292727e-01	ci right 3.358144e-01	k: 26603	n:80000
ALDH3A1   80000 perm   19 sec   (4255 perm/sec)   p_kst 3.325375e-01   p_cons 2.468750e-02   p_joint 1.798750e-02

Joint ci ratio: 9.633065e-02	ci left: 1.719565e-02	ci right 1.894672e-02	k: 1625	n:90000
Cons ci ratio: 8.239303e-02	ci left: 2.352156e-02	ci right 2.555369e-02	k: 2207	n:90000
KS ci ratio: 1.850311e-02	ci left: 3.296659e-01	ci right 3.358338e-01	k: 29947	n:90000
ALDH3A1   90000 perm   22 sec   (4157 perm/sec)   p_kst 3.327444e-01   p_cons 2.452222e-02   p_joint 1.805556e-02

Outputting figure to mutsig2_images.part000000000006/ALDH3A1.2_1402_90000_0.33274_0.024522_0.018056.png
                gene_name: ALDH3A1
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 90 percent done.
ALG12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.654243e-02	ci left: 4.052191e-01	ci right 4.246305e-01	k: 4149	n:10000
KS ci ratio: 5.866090e-02	ci left: 2.995534e-01	ci right 3.177582e-01	k: 3086	n:10000
ALG12   10000 perm   2 sec   (5796 perm/sec)   p_kst 3.086000e-01   p_cons 4.149000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000006/ALG12.2_1503_10000_0.3086_0.4149_1.png
                gene_name: ALG12
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
ALG9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.226434e-02	ci left: 9.051459e-01	ci right 9.164135e-01	k: 9109	n:10000
Cons ci ratio: 3.455280e-02	ci left: 5.529105e-01	ci right 5.724530e-01	k: 5627	n:10000
KS ci ratio: 3.343604e-02	ci left: 5.690509e-01	ci right 5.885032e-01	k: 5788	n:10000
ALG9   10000 perm   2 sec   (5978 perm/sec)   p_kst 5.788000e-01   p_cons 5.627000e-01   p_joint 9.109000e-01

Outputting figure to mutsig2_images.part000000000006/ALG9.2_1918_10000_0.5788_0.5627_0.9109.png
                gene_name: ALG9
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 93 percent done.
ALKBH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.516901e-02	ci left: 2.057000e-01	ci right 2.218670e-01	k: 2137	n:10000
Cons ci ratio: 7.138054e-02	ci left: 2.233609e-01	ci right 2.399957e-01	k: 2316	n:10000
KS ci ratio: 6.943212e-02	ci left: 2.332365e-01	ci right 2.501142e-01	k: 2416	n:10000
ALKBH8   10000 perm   2 sec   (5904 perm/sec)   p_kst 2.416000e-01   p_cons 2.316000e-01   p_joint 2.137000e-01

Outputting figure to mutsig2_images.part000000000006/ALKBH8.2_2039_10000_0.2416_0.2316_0.2137.png
                gene_name: ALKBH8
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 95 percent done.
ALOX12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.560388e-02	ci left: 3.226707e-01	ci right 3.412273e-01	k: 3319	n:10000
Cons ci ratio: 6.748140e-02	ci left: 2.437115e-01	ci right 2.608330e-01	k: 2522	n:10000
KS ci ratio: 2.257142e-02	ci left: 7.424021e-01	ci right 7.594515e-01	k: 7510	n:10000
ALOX12   10000 perm   2 sec   (5352 perm/sec)   p_kst 7.510000e-01   p_cons 2.522000e-01   p_joint 3.319000e-01

Outputting figure to mutsig2_images.part000000000006/ALOX12.2_2048_10000_0.751_0.2522_0.3319.png
                gene_name: ALOX12
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 97 percent done.
ALOX12B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.007556e-02	ci left: 9.331980e-01	ci right 9.427449e-01	k: 9381	n:10000
Cons ci ratio: 4.892293e-02	ci left: 3.813192e-01	ci right 4.005443e-01	k: 3909	n:10000
KS ci ratio: 1.423087e-02	ci left: 8.771523e-01	ci right 8.898233e-01	k: 8836	n:10000
ALOX12B   10000 perm   2 sec   (5592 perm/sec)   p_kst 8.836000e-01   p_cons 3.909000e-01   p_joint 9.381000e-01

Outputting figure to mutsig2_images.part000000000006/ALOX12B.2_2166_10000_0.8836_0.3909_0.9381.png
                gene_name: ALOX12B
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 98 percent done.
ALPI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.155349e-02	ci left: 4.609766e-01	ci right 4.806404e-01	k: 4708	n:10000
Cons ci ratio: 5.816980e-02	ci left: 3.031235e-01	ci right 3.213860e-01	k: 3122	n:10000
KS ci ratio: 4.984961e-02	ci left: 3.724625e-01	ci right 3.916063e-01	k: 3820	n:10000
ALPI   10000 perm   2 sec   (5574 perm/sec)   p_kst 3.820000e-01   p_cons 3.122000e-01   p_joint 4.708000e-01

Outputting figure to mutsig2_images.part000000000006/ALPI.2_1631_10000_0.382_0.3122_0.4708.png
                gene_name: ALPI
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000006
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 6 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1641>
Subject: Job 9893805: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1641>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000007> was used as the working directory.
Started at Fri Oct  5 23:52:42 2012
Results reported at Sat Oct  6 00:07:52 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000007.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000007.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 7  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000007.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    933.06 sec.
    Max Memory :      3474 MB
    Max Swap   :      5961 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
7
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 7
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 7: processing genes 542 - 631
Calculating significance of each gene.
Using projection method.
542	ALPL	9.657974e-01
543	ALPP	9.536577e-01
544	ALPPL2	9.720768e-01
545	ALS2	4.591333e-01
546	ALS2CL	7.977644e-01
547	ALS2CR11	5.225329e-01
548	ALS2CR12	4.972188e-01
549	ALS2CR4	8.237759e-01
550	ALS2CR8	2.431134e-01
551	ALX1	8.271080e-01
552	ALX3	1
553	ALX4	8.173686e-01
554	AMAC1	7.539428e-01
555	AMAC1L2	1
556	AMAC1L3	4.132251e-01
557	AMACR	3.533038e-01
558	AMBN	2.663605e-01
559	AMBP	1
In gene AMBRA1 the following bins exceed PROBCAP:
    COAD-AA-A01I	categ 6	N = 3699    n = 1	mu =   3.29e-07
560	AMBRA1	7.625540e-01
561	AMD1	8.385814e-01
562	AMDHD1	3.706983e-01
563	AMDHD2	1
564	AMELX	3.985876e-01
565	AMELY	1
566	AMFR	7.796572e-01
567	AMH	1
568	AMHR2	6.169842e-01
569	AMICA1	1.134506e-01
570	AMIGO1	4.945314e-01
571	AMIGO2	2.842803e-01
572	AMIGO3	1
573	AMMECR1	6.321039e-01
574	AMMECR1L	4.557347e-01
575	AMN	1
576	AMN1	6.517794e-01
577	AMOT	5.600454e-02
578	AMOTL1	2.908570e-02
579	AMOTL2	1
580	AMPD1	1.131993e-02
581	AMPD2	5.999613e-01
582	AMPD3	8.665185e-01
583	AMPH	5.746081e-02
584	AMT	1
585	AMTN	1.295471e-01
In gene AMY2A the following bins exceed PROBCAP:
    READ-AG-4015	categ 6	N = 781     n = 1	mu =   3.29e-07
586	AMY2A	1.148231e-03
587	AMY2B	8.343800e-01
588	AMZ1	2.185550e-01
589	AMZ2	7.685021e-01
590	ANAPC1	9.809744e-01
591	ANAPC10	5.588481e-01
592	ANAPC11	1
593	ANAPC13	1
594	ANAPC16	1
595	ANAPC2	9.770702e-01
596	ANAPC4	9.124547e-01
In gene ANAPC5 the following bins exceed PROBCAP:
    READ-AG-3727	categ 6	N = 2336    n = 1	mu =   2.96e-07
597	ANAPC5	6.062183e-01
598	ANAPC7	2.565219e-01
599	ANG	4.697752e-01
600	ANGEL1	8.367945e-01
601	ANGEL2	7.307442e-02
602	ANGPT1	1.770415e-02
603	ANGPT2	5.858738e-02
604	ANGPT4	3.580084e-01
605	ANGPTL1	7.148342e-01
606	ANGPTL2	6.284170e-02
607	ANGPTL3	4.692614e-01
608	ANGPTL4	1
609	ANGPTL5	2.378870e-04
610	ANGPTL6	1
611	ANGPTL7	7.454973e-01
612	ANK1	4.598766e-02
613	ANK2	8.483455e-06
614	ANK3	4.449167e-01
615	ANKAR	6.561568e-01
In gene ANKDD1A the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 1501    n = 1	mu =   2.96e-07
616	ANKDD1A	2.568570e-02
617	ANKFN1	3.859257e-02
618	ANKFY1	4.755726e-01
619	ANKH	8.389119e-01
620	ANKHD1	1
621	ANKHD1-EIF4EBP3	8.545956e-01
622	ANKIB1	9.603723e-02
623	ANKK1	6.059144e-01
624	ANKLE1	9.332822e-01
625	ANKLE2	8.571149e-01
626	ANKMY1	9.358338e-01
627	ANKMY2	9.161161e-02
628	ANKRA2	4.655955e-01
629	ANKRD1	1.118133e-01
630	ANKRD10	2.738607e-01
631	ANKRD11	9.898263e-01
Done

Running MutSig 2:
Scatter job 7: processing genes 542 - 631
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ANK2
Processing conservation and coverage...
82% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.657006e-02	ci left: 5.247648e-01	ci right 5.444151e-01	k: 5346	n:10000
Cons ci ratio: 2.839059e-02	ci left: 6.464944e-01	ci right 6.652148e-01	k: 6559	n:10000
KS ci ratio: 4.299014e-02	ci left: 4.441065e-01	ci right 4.637203e-01	k: 4539	n:10000
ANK2   10000 perm   4 sec   (2547 perm/sec)   p_kst 4.539000e-01   p_cons 6.559000e-01   p_joint 5.346000e-01

Outputting figure to mutsig2_images.part000000000007/ANK2.42_12123_10000_0.4539_0.6559_0.5346.png
                gene_name: ANK2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 2 percent done.
ANK3
Processing conservation and coverage...
73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.880239e-03	ci left: 9.666774e-01	ci right 9.734451e-01	k: 9702	n:10000
Cons ci ratio: 1.282976e-02	ci left: 8.973393e-01	ci right 9.090246e-01	k: 9033	n:10000
KS ci ratio: 1.418244e-02	ci left: 8.778686e-01	ci right 8.905067e-01	k: 8843	n:10000
ANK3   10000 perm   4 sec   (2645 perm/sec)   p_kst 8.843000e-01   p_cons 9.033000e-01   p_joint 9.702000e-01

Outputting figure to mutsig2_images.part000000000007/ANK3.27_13639_10000_0.8843_0.9033_0.9702.png
                gene_name: ANK3
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 4 percent done.
ANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.450369e-02	ci left: 5.536120e-01	ci right 5.731511e-01	k: 5634	n:10000
Cons ci ratio: 5.036011e-02	ci left: 3.676872e-01	ci right 3.867843e-01	k: 3772	n:10000
KS ci ratio: 3.494759e-02	ci left: 5.472988e-01	ci right 5.668679e-01	k: 5571	n:10000
ANK1   10000 perm   3 sec   (3529 perm/sec)   p_kst 5.571000e-01   p_cons 3.772000e-01   p_joint 5.634000e-01

Outputting figure to mutsig2_images.part000000000007/ANK1.19_6298_10000_0.5571_0.3772_0.5634.png
                gene_name: ANK1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 5 percent done.
AMOTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.253337e-02	ci left: 2.731952e-01	ci right 2.909319e-01	k: 2820	n:10000
Cons ci ratio: 2.656233e-02	ci left: 6.760950e-01	ci right 6.943970e-01	k: 6853	n:10000
KS ci ratio: 7.350978e-02	ci left: 2.131958e-01	ci right 2.295668e-01	k: 2213	n:10000
AMOTL1   10000 perm   2 sec   (4805 perm/sec)   p_kst 2.213000e-01   p_cons 6.853000e-01   p_joint 2.820000e-01

Outputting figure to mutsig2_images.part000000000007/AMOTL1.13_2923_10000_0.2213_0.6853_0.282.png
                gene_name: AMOTL1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 7 percent done.
ALS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.356182e-01	ci left: 7.184865e-02	ci right 8.239926e-02	k: 770	n:10000
Cons ci ratio: 1.809983e-01	ci left: 4.073298e-02	ci right 4.893483e-02	k: 447	n:10000
KS ci ratio: 6.248709e-02	ci left: 2.734923e-01	ci right 2.912347e-01	k: 2823	n:10000
ALS2   10000 perm   2 sec   (4469 perm/sec)   p_kst 2.823000e-01   p_cons 4.470000e-02   p_joint 7.700000e-02

Joint ci ratio: 9.339492e-02	ci left: 7.715702e-02	ci right 8.476534e-02	k: 1618	n:20000
Cons ci ratio: 1.292004e-01	ci left: 4.115060e-02	ci right 4.688292e-02	k: 879	n:20000
KS ci ratio: 4.459212e-02	ci left: 2.724440e-01	ci right 2.849204e-01	k: 5573	n:20000
ALS2   20000 perm   5 sec   (4068 perm/sec)   p_kst 2.786500e-01   p_cons 4.395000e-02   p_joint 8.090000e-02

Joint ci ratio: 6.606322e-02	ci left: 1.015528e-01	ci right 1.085239e-01	k: 3150	n:30000
Cons ci ratio: 1.056181e-01	ci left: 4.157680e-02	ci right 4.624538e-02	k: 1316	n:30000
KS ci ratio: 3.566622e-02	ci left: 2.819184e-01	ci right 2.921895e-01	k: 8611	n:30000
ALS2   30000 perm   8 sec   (3814 perm/sec)   p_kst 2.870333e-01   p_cons 4.386667e-02   p_joint 1.050000e-01

Joint ci ratio: 5.524417e-02	ci left: 1.087029e-01	ci right 1.149035e-01	k: 4471	n:40000
Cons ci ratio: 9.127816e-02	ci left: 4.205968e-02	ci right 4.610684e-02	k: 1762	n:40000
KS ci ratio: 3.093069e-02	ci left: 2.820475e-01	ci right 2.909335e-01	k: 11459	n:40000
ALS2   40000 perm   11 sec   (3654 perm/sec)   p_kst 2.864750e-01   p_cons 4.405000e-02   p_joint 1.117750e-01

Outputting figure to mutsig2_images.part000000000007/ALS2.12_5184_40000_0.28647_0.04405_0.11177.png
                gene_name: ALS2
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 9 percent done.
ANKHD1-EIF4EBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.925322e-02	ci left: 3.781344e-01	ci right 3.973310e-01	k: 3877	n:10000
Cons ci ratio: 3.767188e-02	ci left: 5.099533e-01	ci right 5.296352e-01	k: 5198	n:10000
KS ci ratio: 6.121662e-02	ci left: 2.818121e-01	ci right 2.997100e-01	k: 2907	n:10000
ANKHD1-EIF4EBP3   10000 perm   3 sec   (3775 perm/sec)   p_kst 2.907000e-01   p_cons 5.198000e-01   p_joint 3.877000e-01

Outputting figure to mutsig2_images.part000000000007/ANKHD1-EIF4EBP3.10_7998_10000_0.2907_0.5198_0.3877.png
                gene_name: ANKHD1-EIF4EBP3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 11 percent done.
AMPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
Cons ci ratio: 6.710973e-01	ci left: 2.272624e-03	ci right 4.631334e-03	k: 33	n:10000
KS ci ratio: 3.071847e-02	ci left: 6.099005e-01	ci right 6.290299e-01	k: 6195	n:10000
AMPD1   10000 perm   2 sec   (4939 perm/sec)   p_kst 6.195000e-01   p_cons 3.300000e-03   p_joint 3.010000e-02

Joint ci ratio: 1.300529e-01	ci left: 4.061770e-02	ci right 4.631599e-02	k: 868	n:20000
Cons ci ratio: 4.033559e-01	ci left: 3.754742e-03	ci right 5.693581e-03	k: 93	n:20000
KS ci ratio: 2.226028e-02	ci left: 6.010935e-01	ci right 6.146752e-01	k: 12158	n:20000
AMPD1   20000 perm   5 sec   (4341 perm/sec)   p_kst 6.079000e-01   p_cons 4.650000e-03   p_joint 4.340000e-02

Joint ci ratio: 1.147108e-01	ci left: 3.531357e-02	ci right 3.964326e-02	k: 1123	n:30000
Cons ci ratio: 3.258763e-01	ci left: 4.018883e-03	ci right 5.612681e-03	k: 143	n:30000
KS ci ratio: 1.819737e-02	ci left: 6.017805e-01	ci right 6.128654e-01	k: 18220	n:30000
AMPD1   30000 perm   7 sec   (4307 perm/sec)   p_kst 6.073333e-01   p_cons 4.766667e-03   p_joint 3.743333e-02

Joint ci ratio: 1.206787e-01	ci left: 2.414703e-02	ci right 2.727234e-02	k: 1027	n:40000
Cons ci ratio: 2.822184e-01	ci left: 4.123096e-03	ci right 5.500309e-03	k: 191	n:40000
KS ci ratio: 1.577467e-02	ci left: 6.020682e-01	ci right 6.116663e-01	k: 24275	n:40000
AMPD1   40000 perm   9 sec   (4247 perm/sec)   p_kst 6.068750e-01   p_cons 4.775000e-03   p_joint 2.567500e-02

Joint ci ratio: 9.199615e-02	ci left: 3.342573e-02	ci right 3.666854e-02	k: 1751	n:50000
Cons ci ratio: 2.508538e-01	ci left: 4.250575e-03	ci right 5.487988e-03	k: 242	n:50000
KS ci ratio: 1.454363e-02	ci left: 5.879975e-01	ci right 5.966318e-01	k: 29616	n:50000
AMPD1   50000 perm   12 sec   (4116 perm/sec)   p_kst 5.923200e-01   p_cons 4.840000e-03   p_joint 3.502000e-02

Joint ci ratio: 8.982164e-02	ci left: 2.938302e-02	ci right 3.216261e-02	k: 1845	n:60000
Cons ci ratio: 2.276676e-01	ci left: 4.356993e-03	ci right 5.491709e-03	k: 294	n:60000
KS ci ratio: 1.332660e-02	ci left: 5.865527e-01	ci right 5.944386e-01	k: 35430	n:60000
AMPD1   60000 perm   15 sec   (4005 perm/sec)   p_kst 5.905000e-01   p_cons 4.900000e-03   p_joint 3.075000e-02

Joint ci ratio: 9.180277e-02	ci left: 2.421908e-02	ci right 2.656334e-02	k: 1776	n:70000
Cons ci ratio: 2.139790e-01	ci left: 4.260893e-03	ci right 5.295101e-03	k: 333	n:70000
KS ci ratio: 1.231403e-02	ci left: 5.877905e-01	ci right 5.950877e-01	k: 41401	n:70000
AMPD1   70000 perm   18 sec   (3961 perm/sec)   p_kst 5.914429e-01   p_cons 4.757143e-03   p_joint 2.537143e-02

Joint ci ratio: 8.567603e-02	ci left: 2.440639e-02	ci right 2.660321e-02	k: 2039	n:80000
Cons ci ratio: 1.967479e-01	ci left: 4.451673e-03	ci right 5.434757e-03	k: 394	n:80000
KS ci ratio: 1.150130e-02	ci left: 5.887601e-01	ci right 5.955832e-01	k: 47374	n:80000
AMPD1   80000 perm   20 sec   (3916 perm/sec)   p_kst 5.921750e-01   p_cons 4.925000e-03   p_joint 2.548750e-02

Joint ci ratio: 7.976546e-02	ci left: 2.508992e-02	ci right 2.718522e-02	k: 2351	n:90000
Cons ci ratio: 1.892505e-01	ci left: 4.295388e-03	ci right 5.203653e-03	k: 426	n:90000
KS ci ratio: 1.082877e-02	ci left: 5.896150e-01	ci right 5.960457e-01	k: 53355	n:90000
AMPD1   90000 perm   23 sec   (3862 perm/sec)   p_kst 5.928333e-01   p_cons 4.733333e-03   p_joint 2.612222e-02

Joint ci ratio: 7.560291e-02	ci left: 2.518932e-02	ci right 2.717829e-02	k: 2617	n:100000
Cons ci ratio: 1.766523e-01	ci left: 4.467060e-03	ci right 5.342037e-03	k: 489	n:100000
KS ci ratio: 1.026231e-02	ci left: 5.902878e-01	ci right 5.963868e-01	k: 59334	n:100000
AMPD1   100000 perm   26 sec   (3813 perm/sec)   p_kst 5.933400e-01   p_cons 4.890000e-03   p_joint 2.617000e-02

Joint ci ratio: 7.440968e-02	ci left: 2.369261e-02	ci right 2.553258e-02	k: 2706	n:110000
Cons ci ratio: 1.692220e-01	ci left: 4.443650e-03	ci right 5.273696e-03	k: 533	n:110000
KS ci ratio: 9.781679e-03	ci left: 5.905813e-01	ci right 5.963956e-01	k: 65284	n:110000
AMPD1   110000 perm   29 sec   (3740 perm/sec)   p_kst 5.934909e-01   p_cons 4.845455e-03   p_joint 2.460000e-02

Joint ci ratio: 6.761003e-02	ci left: 2.632790e-02	ci right 2.817837e-02	k: 3269	n:120000
Cons ci ratio: 1.626567e-01	ci left: 4.424785e-03	ci right 5.216104e-03	k: 577	n:120000
KS ci ratio: 9.371709e-03	ci left: 5.903725e-01	ci right 5.959396e-01	k: 71179	n:120000
AMPD1   120000 perm   32 sec   (3695 perm/sec)   p_kst 5.931583e-01   p_cons 4.808333e-03   p_joint 2.724167e-02

Joint ci ratio: 6.516119e-02	ci left: 2.620134e-02	ci right 2.797369e-02	k: 3520	n:130000
Cons ci ratio: 1.565479e-01	ci left: 4.424133e-03	ci right 5.182831e-03	k: 623	n:130000
KS ci ratio: 9.013468e-03	ci left: 5.899771e-01	ci right 5.953265e-01	k: 77045	n:130000
AMPD1   130000 perm   36 sec   (3649 perm/sec)   p_kst 5.926538e-01   p_cons 4.792308e-03   p_joint 2.707692e-02

Joint ci ratio: 5.388173e-02	ci left: 3.544616e-02	ci right 3.741596e-02	k: 5099	n:140000
Cons ci ratio: 1.561982e-01	ci left: 4.128664e-03	ci right 4.834958e-03	k: 626	n:140000
KS ci ratio: 8.676036e-03	ci left: 5.906070e-01	ci right 5.957606e-01	k: 83046	n:140000
AMPD1   140000 perm   39 sec   (3584 perm/sec)   p_kst 5.931857e-01   p_cons 4.471429e-03   p_joint 3.642143e-02

Joint ci ratio: 5.037225e-02	ci left: 3.782830e-02	ci right 3.978958e-02	k: 5820	n:150000
Cons ci ratio: 1.513308e-01	ci left: 4.116235e-03	ci right 4.796472e-03	k: 667	n:150000
KS ci ratio: 8.388089e-03	ci left: 5.903352e-01	ci right 5.953145e-01	k: 88924	n:150000
AMPD1   150000 perm   42 sec   (3537 perm/sec)   p_kst 5.928267e-01   p_cons 4.446667e-03   p_joint 3.880000e-02

Joint ci ratio: 4.767716e-02	ci left: 3.957019e-02	ci right 4.150901e-02	k: 6485	n:160000
Cons ci ratio: 1.467877e-01	ci left: 4.111680e-03	ci right 4.768976e-03	k: 709	n:160000
KS ci ratio: 8.118294e-03	ci left: 5.906193e-01	ci right 5.954398e-01	k: 94885	n:160000
AMPD1   160000 perm   46 sec   (3454 perm/sec)   p_kst 5.930313e-01   p_cons 4.431250e-03   p_joint 4.053125e-02

Joint ci ratio: 4.580646e-02	ci left: 4.035318e-02	ci right 4.225074e-02	k: 7020	n:170000
Cons ci ratio: 1.424406e-01	ci left: 4.119277e-03	ci right 4.756628e-03	k: 753	n:170000
KS ci ratio: 7.872481e-03	ci left: 5.909015e-01	ci right 5.955776e-01	k: 100851	n:170000
AMPD1   170000 perm   50 sec   (3373 perm/sec)   p_kst 5.932412e-01   p_cons 4.429412e-03   p_joint 4.129412e-02

Joint ci ratio: 4.563849e-02	ci left: 3.847294e-02	ci right 4.027526e-02	k: 7086	n:180000
Cons ci ratio: 1.385454e-01	ci left: 4.120921e-03	ci right 4.739651e-03	k: 796	n:180000
KS ci ratio: 7.652917e-03	ci left: 5.908263e-01	ci right 5.953707e-01	k: 106758	n:180000
AMPD1   180000 perm   54 sec   (3315 perm/sec)   p_kst 5.931000e-01   p_cons 4.422222e-03   p_joint 3.936667e-02

Joint ci ratio: 4.412042e-02	ci left: 3.900870e-02	ci right 4.077379e-02	k: 7578	n:190000
Cons ci ratio: 1.350339e-01	ci left: 4.117518e-03	ci right 4.718809e-03	k: 838	n:190000
KS ci ratio: 7.449292e-03	ci left: 5.908554e-01	ci right 5.952786e-01	k: 112683	n:190000
AMPD1   190000 perm   58 sec   (3284 perm/sec)   p_kst 5.930684e-01   p_cons 4.410526e-03   p_joint 3.988421e-02

Joint ci ratio: 4.465850e-02	ci left: 3.626598e-02	ci right 3.792747e-02	k: 7418	n:200000
Cons ci ratio: 1.323056e-01	ci left: 4.080785e-03	ci right 4.663724e-03	k: 873	n:200000
KS ci ratio: 7.255161e-03	ci left: 5.912785e-01	ci right 5.955888e-01	k: 118687	n:200000
AMPD1   200000 perm   62 sec   (3240 perm/sec)   p_kst 5.934350e-01   p_cons 4.365000e-03   p_joint 3.709000e-02

Joint ci ratio: 4.421369e-02	ci left: 3.528265e-02	ci right 3.688257e-02	k: 7576	n:210000
Cons ci ratio: 1.288143e-01	ci left: 4.107572e-03	ci right 4.677670e-03	k: 921	n:210000
KS ci ratio: 7.082924e-03	ci left: 5.911525e-01	ci right 5.953592e-01	k: 124584	n:210000
AMPD1   210000 perm   66 sec   (3194 perm/sec)   p_kst 5.932571e-01   p_cons 4.385714e-03   p_joint 3.607619e-02

Joint ci ratio: 4.279277e-02	ci left: 3.595414e-02	ci right 3.753083e-02	k: 8082	n:220000
Cons ci ratio: 1.257811e-01	ci left: 4.118897e-03	ci right 4.676103e-03	k: 966	n:220000
KS ci ratio: 6.917835e-03	ci left: 5.913576e-01	ci right 5.954672e-01	k: 130551	n:220000
AMPD1   220000 perm   70 sec   (3160 perm/sec)   p_kst 5.934136e-01   p_cons 4.390909e-03   p_joint 3.673636e-02

Joint ci ratio: 4.227572e-02	ci left: 3.527247e-02	ci right 3.680012e-02	k: 8287	n:230000
Cons ci ratio: 1.233818e-01	ci left: 4.099881e-03	ci right 4.643161e-03	k: 1004	n:230000
KS ci ratio: 6.762372e-03	ci left: 5.916459e-01	ci right 5.956647e-01	k: 136541	n:230000
AMPD1   230000 perm   74 sec   (3120 perm/sec)   p_kst 5.936565e-01   p_cons 4.365217e-03   p_joint 3.603043e-02

Joint ci ratio: 4.220851e-02	ci left: 3.395895e-02	ci right 3.542731e-02	k: 8325	n:240000
Cons ci ratio: 1.212316e-01	ci left: 4.074460e-03	ci right 4.604287e-03	k: 1040	n:240000
KS ci ratio: 6.623169e-03	ci left: 5.914566e-01	ci right 5.953911e-01	k: 142422	n:240000
AMPD1   240000 perm   78 sec   (3078 perm/sec)   p_kst 5.934250e-01   p_cons 4.333333e-03   p_joint 3.468750e-02

Joint ci ratio: 4.954929e-02	ci left: 2.381848e-02	ci right 2.503258e-02	k: 6105	n:250000
Cons ci ratio: 1.259452e-01	ci left: 3.616822e-03	ci right 4.106790e-03	k: 964	n:250000
KS ci ratio: 6.491090e-03	ci left: 5.913674e-01	ci right 5.952225e-01	k: 148324	n:250000
AMPD1   250000 perm   82 sec   (3040 perm/sec)   p_kst 5.932960e-01   p_cons 3.856000e-03   p_joint 2.442000e-02

Joint ci ratio: 4.500982e-02	ci left: 2.770777e-02	ci right 2.898739e-02	k: 7369	n:260000
Cons ci ratio: 1.229229e-01	ci left: 3.656587e-03	ci right 4.139190e-03	k: 1012	n:260000
KS ci ratio: 6.362703e-03	ci left: 5.915821e-01	ci right 5.953620e-01	k: 154303	n:260000
AMPD1   260000 perm   87 sec   (2981 perm/sec)   p_kst 5.934731e-01   p_cons 3.892308e-03   p_joint 2.834231e-02

Joint ci ratio: 4.408098e-02	ci left: 2.782794e-02	ci right 2.908591e-02	k: 7682	n:270000
Cons ci ratio: 1.207381e-01	ci left: 3.654019e-03	ci right 4.127099e-03	k: 1049	n:270000
KS ci ratio: 6.245429e-03	ci left: 5.914888e-01	ci right 5.951981e-01	k: 160203	n:270000
AMPD1   270000 perm   91 sec   (2954 perm/sec)   p_kst 5.933444e-01   p_cons 3.885185e-03   p_joint 2.845185e-02

Joint ci ratio: 4.399522e-02	ci left: 2.696451e-02	ci right 2.818101e-02	k: 7719	n:280000
Cons ci ratio: 1.180677e-01	ci left: 3.689831e-03	ci right 4.156244e-03	k: 1097	n:280000
KS ci ratio: 6.134273e-03	ci left: 5.914135e-01	ci right 5.950560e-01	k: 166106	n:280000
AMPD1   280000 perm   96 sec   (2911 perm/sec)   p_kst 5.932357e-01   p_cons 3.917857e-03   p_joint 2.756786e-02

Joint ci ratio: 4.347588e-02	ci left: 2.667580e-02	ci right 2.786471e-02	k: 7907	n:290000
Cons ci ratio: 1.160251e-01	ci left: 3.693141e-03	ci right 4.151343e-03	k: 1136	n:290000
KS ci ratio: 6.026306e-03	ci left: 5.915475e-01	ci right 5.951265e-01	k: 172068	n:290000
AMPD1   290000 perm   101 sec   (2885 perm/sec)   p_kst 5.933379e-01   p_cons 3.917241e-03   p_joint 2.726552e-02

Joint ci ratio: 4.525491e-02	ci left: 2.384753e-02	ci right 2.495501e-02	k: 7319	n:300000
Cons ci ratio: 1.139878e-01	ci left: 3.702773e-03	ci right 4.153560e-03	k: 1177	n:300000
KS ci ratio: 5.925401e-03	ci left: 5.915463e-01	ci right 5.950652e-01	k: 177992	n:300000
AMPD1   300000 perm   105 sec   (2858 perm/sec)   p_kst 5.933067e-01   p_cons 3.923333e-03   p_joint 2.439667e-02

Joint ci ratio: 4.355476e-02	ci left: 2.490961e-02	ci right 2.602187e-02	k: 7893	n:310000
Cons ci ratio: 1.118700e-01	ci left: 3.724392e-03	ci right 4.168832e-03	k: 1222	n:310000
KS ci ratio: 5.830803e-03	ci left: 5.914295e-01	ci right 5.948913e-01	k: 183880	n:310000
AMPD1   310000 perm   110 sec   (2812 perm/sec)   p_kst 5.931613e-01   p_cons 3.941935e-03   p_joint 2.546129e-02

Joint ci ratio: 4.363209e-02	ci left: 2.406605e-02	ci right 2.514259e-02	k: 7872	n:320000
Cons ci ratio: 1.103477e-01	ci left: 3.711300e-03	ci right 4.147759e-03	k: 1256	n:320000
KS ci ratio: 5.736211e-03	ci left: 5.916895e-01	ci right 5.950964e-01	k: 189886	n:320000
AMPD1   320000 perm   115 sec   (2784 perm/sec)   p_kst 5.933938e-01   p_cons 3.925000e-03   p_joint 2.460000e-02

Joint ci ratio: 4.261748e-02	ci left: 2.446398e-02	ci right 2.553226e-02	k: 8248	n:330000
Cons ci ratio: 1.087168e-01	ci left: 3.710833e-03	ci right 4.140375e-03	k: 1294	n:330000
KS ci ratio: 5.644160e-03	ci left: 5.920978e-01	ci right 5.954521e-01	k: 195946	n:330000
AMPD1   330000 perm   120 sec   (2746 perm/sec)   p_kst 5.937758e-01   p_cons 3.921212e-03   p_joint 2.499394e-02

Joint ci ratio: 4.403809e-02	ci left: 2.227178e-02	ci right 2.327756e-02	k: 7742	n:340000
Cons ci ratio: 1.073180e-01	ci left: 3.698988e-03	ci right 4.121301e-03	k: 1328	n:340000
KS ci ratio: 5.460368e-03	ci left: 6.008674e-01	ci right 6.041602e-01	k: 204855	n:340000
AMPD1   340000 perm   125 sec   (2714 perm/sec)   p_kst 6.025147e-01   p_cons 3.905882e-03   p_joint 2.277059e-02

Joint ci ratio: 4.368491e-02	ci left: 2.199708e-02	ci right 2.298228e-02	k: 7870	n:350000
Cons ci ratio: 1.055451e-01	ci left: 3.718454e-03	ci right 4.135540e-03	k: 1373	n:350000
KS ci ratio: 5.386009e-03	ci left: 6.005162e-01	ci right 6.037621e-01	k: 210749	n:350000
AMPD1   350000 perm   130 sec   (2690 perm/sec)   p_kst 6.021400e-01   p_cons 3.922857e-03   p_joint 2.248571e-02

Joint ci ratio: 4.202602e-02	ci left: 2.310108e-02	ci right 2.409550e-02	k: 8494	n:360000
Cons ci ratio: 1.039308e-01	ci left: 3.731480e-03	ci right 4.143235e-03	k: 1416	n:360000
KS ci ratio: 5.309458e-03	ci left: 6.006490e-01	ci right 6.038493e-01	k: 216810	n:360000
AMPD1   360000 perm   135 sec   (2667 perm/sec)   p_kst 6.022500e-01   p_cons 3.933333e-03   p_joint 2.359444e-02

Joint ci ratio: 4.202962e-02	ci left: 2.248727e-02	ci right 2.345535e-02	k: 8498	n:370000
Cons ci ratio: 1.026002e-01	ci left: 3.728046e-03	ci right 4.133838e-03	k: 1453	n:370000
KS ci ratio: 5.235460e-03	ci left: 6.008317e-01	ci right 6.039883e-01	k: 222892	n:370000
AMPD1   370000 perm   140 sec   (2642 perm/sec)   p_kst 6.024108e-01   p_cons 3.927027e-03   p_joint 2.296757e-02

Joint ci ratio: 4.185661e-02	ci left: 2.208810e-02	ci right 2.303499e-02	k: 8572	n:380000
Cons ci ratio: 1.010815e-01	ci left: 3.742781e-03	ci right 4.143789e-03	k: 1497	n:380000
KS ci ratio: 5.164698e-03	ci left: 6.009841e-01	ci right 6.040986e-01	k: 228966	n:380000
AMPD1   380000 perm   145 sec   (2619 perm/sec)   p_kst 6.025421e-01   p_cons 3.939474e-03   p_joint 2.255789e-02

Joint ci ratio: 4.260920e-02	ci left: 2.078824e-02	ci right 2.169581e-02	k: 8283	n:390000
Cons ci ratio: 9.953122e-02	ci left: 3.764304e-03	ci right 4.161071e-03	k: 1544	n:390000
KS ci ratio: 5.098502e-03	ci left: 6.009621e-01	ci right 6.040364e-01	k: 234975	n:390000
AMPD1   390000 perm   150 sec   (2594 perm/sec)   p_kst 6.025000e-01   p_cons 3.958974e-03   p_joint 2.123846e-02

Outputting figure to mutsig2_images.part000000000007/AMPD1.9_2407_390000_0.6025_0.003959_0.021238.png
                gene_name: AMPD1
               theta_stop: 0.100 
                    nperm: 390000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.0040 
      ci_cons_bounds_left: 0.0038 
     ci_cons_bounds_right: 0.0042 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.022 

Current progress: 12 percent done.
AMPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.351584e-02	ci left: 8.875964e-01	ci right 8.997732e-01	k: 8938	n:10000
Cons ci ratio: 4.933479e-03	ci left: 9.818827e-01	ci right 9.868293e-01	k: 9845	n:10000
KS ci ratio: 2.214905e-02	ci left: 7.494812e-01	ci right 7.663683e-01	k: 7580	n:10000
AMPH   10000 perm   2 sec   (5342 perm/sec)   p_kst 7.580000e-01   p_cons 9.845000e-01   p_joint 8.938000e-01

Outputting figure to mutsig2_images.part000000000007/AMPH.9_2172_10000_0.758_0.9845_0.8938.png
                gene_name: AMPH
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 14 percent done.
ANGPTL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.670904e-03	ci left: 9.379643e-01	ci right 9.471758e-01	k: 9427	n:10000
Cons ci ratio: 1.622331e-02	ci left: 8.467224e-01	ci right 8.606709e-01	k: 8538	n:10000
KS ci ratio: 1.338029e-02	ci left: 8.895437e-01	ci right 9.016248e-01	k: 8957	n:10000
ANGPTL5   10000 perm   2 sec   (4988 perm/sec)   p_kst 8.957000e-01   p_cons 8.538000e-01   p_joint 9.427000e-01

Outputting figure to mutsig2_images.part000000000007/ANGPTL5.9_1199_10000_0.8957_0.8538_0.9427.png
                gene_name: ANGPTL5
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 16 percent done.
ANKFY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.889150e-02	ci left: 1.555149e-01	ci right 1.700821e-01	k: 1627	n:10000
Cons ci ratio: 4.000184e-02	ci left: 4.799564e-01	ci right 4.996496e-01	k: 4898	n:10000
KS ci ratio: 1.187869e-01	ci left: 9.233774e-02	ci right 1.040975e-01	k: 981	n:10000
ANKFY1   10000 perm   3 sec   (3977 perm/sec)   p_kst 9.810000e-02   p_cons 4.898000e-01   p_joint 1.627000e-01

Joint ci ratio: 5.849821e-02	ci left: 1.779591e-01	ci right 1.887331e-01	k: 3666	n:20000
Cons ci ratio: 2.704293e-02	ci left: 5.053462e-01	ci right 5.192502e-01	k: 10246	n:20000
KS ci ratio: 8.210895e-02	ci left: 9.808407e-02	ci right 1.065320e-01	k: 2045	n:20000
ANKFY1   20000 perm   7 sec   (2918 perm/sec)   p_kst 1.022500e-01   p_cons 5.123000e-01   p_joint 1.833000e-01

Outputting figure to mutsig2_images.part000000000007/ANKFY1.9_3705_20000_0.10225_0.5123_0.1833.png
                gene_name: ANKFY1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 18 percent done.
ANKIB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.620135e-01	ci left: 5.080410e-02	ci right 5.985714e-02	k: 552	n:10000
Cons ci ratio: 4.809000e-01	ci left: 5.020040e-03	ci right 8.277383e-03	k: 65	n:10000
KS ci ratio: 5.803467e-02	ci left: 3.041153e-01	ci right 3.223936e-01	k: 3132	n:10000
ANKIB1   10000 perm   3 sec   (3425 perm/sec)   p_kst 3.132000e-01   p_cons 6.500000e-03   p_joint 5.520000e-02

Joint ci ratio: 1.591209e-01	ci left: 2.710248e-02	ci right 3.183564e-02	k: 588	n:20000
Cons ci ratio: 3.761731e-01	ci left: 4.386465e-03	ci right 6.461320e-03	k: 107	n:20000
KS ci ratio: 4.108453e-02	ci left: 3.063274e-01	ci right 3.192271e-01	k: 6255	n:20000
ANKIB1   20000 perm   6 sec   (3159 perm/sec)   p_kst 3.127500e-01   p_cons 5.350000e-03   p_joint 2.940000e-02

Joint ci ratio: 1.191303e-01	ci left: 3.275459e-02	ci right 3.693612e-02	k: 1044	n:30000
Cons ci ratio: 3.100462e-01	ci left: 4.479162e-03	ci right 6.152174e-03	k: 158	n:30000
KS ci ratio: 3.350124e-02	ci left: 3.080861e-01	ci right 3.186167e-01	k: 9400	n:30000
ANKIB1   30000 perm   9 sec   (3212 perm/sec)   p_kst 3.133333e-01   p_cons 5.266667e-03   p_joint 3.480000e-02

Joint ci ratio: 1.280989e-01	ci left: 2.140788e-02	ci right 2.436195e-02	k: 914	n:40000
Cons ci ratio: 2.737508e-01	ci left: 4.402273e-03	ci right 5.821036e-03	k: 203	n:40000
KS ci ratio: 2.898374e-02	ci left: 3.092288e-01	ci right 3.183483e-01	k: 12551	n:40000
ANKIB1   40000 perm   12 sec   (3274 perm/sec)   p_kst 3.137750e-01   p_cons 5.075000e-03   p_joint 2.285000e-02

Joint ci ratio: 1.015479e-01	ci left: 2.746851e-02	ci right 3.042652e-02	k: 1446	n:50000
Cons ci ratio: 2.331873e-01	ci left: 4.964747e-03	ci right 6.293640e-03	k: 280	n:50000
KS ci ratio: 2.594554e-02	ci left: 3.093549e-01	ci right 3.175068e-01	k: 15671	n:50000
ANKIB1   50000 perm   15 sec   (3255 perm/sec)   p_kst 3.134200e-01   p_cons 5.600000e-03   p_joint 2.892000e-02

Joint ci ratio: 8.917576e-02	ci left: 2.980695e-02	ci right 3.260531e-02	k: 1871	n:60000
Cons ci ratio: 2.138933e-01	ci left: 4.971242e-03	ci right 6.177340e-03	k: 333	n:60000
KS ci ratio: 2.370182e-02	ci left: 3.094066e-01	ci right 3.168448e-01	k: 18787	n:60000
ANKIB1   60000 perm   18 sec   (3253 perm/sec)   p_kst 3.131167e-01   p_cons 5.550000e-03   p_joint 3.118333e-02

Joint ci ratio: 8.827261e-02	ci left: 2.618918e-02	ci right 2.862164e-02	k: 1917	n:70000
Cons ci ratio: 1.989705e-01	ci left: 4.965560e-03	ci right 6.076034e-03	k: 385	n:70000
KS ci ratio: 2.197232e-02	ci left: 3.091240e-01	ci right 3.160059e-01	k: 21879	n:70000
ANKIB1   70000 perm   22 sec   (3168 perm/sec)   p_kst 3.125571e-01   p_cons 5.500000e-03   p_joint 2.738571e-02

Joint ci ratio: 7.357980e-02	ci left: 3.300039e-02	ci right 3.553353e-02	k: 2740	n:80000
Cons ci ratio: 1.885293e-01	ci left: 4.868176e-03	ci right 5.893197e-03	k: 429	n:80000
KS ci ratio: 2.057579e-02	ci left: 3.088774e-01	ci right 3.153113e-01	k: 24967	n:80000
ANKIB1   80000 perm   27 sec   (2947 perm/sec)   p_kst 3.120875e-01   p_cons 5.362500e-03   p_joint 3.425000e-02

Joint ci ratio: 8.909599e-02	ci left: 2.011662e-02	ci right 2.200331e-02	k: 1894	n:90000
Cons ci ratio: 2.125027e-01	ci left: 3.366447e-03	ci right 4.177165e-03	k: 338	n:90000
KS ci ratio: 1.937798e-02	ci left: 3.095277e-01	ci right 3.155955e-01	k: 28130	n:90000
ANKIB1   90000 perm   31 sec   (2895 perm/sec)   p_kst 3.125556e-01   p_cons 3.755556e-03   p_joint 2.104444e-02

Joint ci ratio: 8.783144e-02	ci left: 1.867151e-02	ci right 2.039652e-02	k: 1952	n:100000
Cons ci ratio: 2.012406e-01	ci left: 3.399616e-03	ci right 4.169606e-03	k: 377	n:100000
KS ci ratio: 1.840141e-02	ci left: 3.092686e-01	ci right 3.150223e-01	k: 31214	n:100000
ANKIB1   100000 perm   34 sec   (2905 perm/sec)   p_kst 3.121400e-01   p_cons 3.770000e-03   p_joint 1.952000e-02

Joint ci ratio: 8.617522e-02	ci left: 1.766736e-02	ci right 1.926726e-02	k: 2030	n:110000
Cons ci ratio: 1.941861e-01	ci left: 3.332496e-03	ci right 4.057695e-03	k: 405	n:110000
KS ci ratio: 1.753596e-02	ci left: 3.096253e-01	ci right 3.151119e-01	k: 34360	n:110000
ANKIB1   110000 perm   38 sec   (2905 perm/sec)   p_kst 3.123636e-01   p_cons 3.681818e-03   p_joint 1.845455e-02

Joint ci ratio: 8.809188e-02	ci left: 1.551772e-02	ci right 1.695580e-02	k: 1947	n:120000
Cons ci ratio: 1.861109e-01	ci left: 3.340512e-03	ci right 4.033813e-03	k: 441	n:120000
KS ci ratio: 1.676849e-02	ci left: 3.102769e-01	ci right 3.155321e-01	k: 37548	n:120000
ANKIB1   120000 perm   42 sec   (2869 perm/sec)   p_kst 3.129000e-01   p_cons 3.675000e-03   p_joint 1.622500e-02

Joint ci ratio: 8.019845e-02	ci left: 1.732191e-02	ci right 1.877663e-02	k: 2345	n:130000
Cons ci ratio: 1.789660e-01	ci left: 3.347824e-03	ci right 4.013079e-03	k: 477	n:130000
KS ci ratio: 1.610549e-02	ci left: 3.105180e-01	ci right 3.155673e-01	k: 40695	n:130000
ANKIB1   130000 perm   45 sec   (2865 perm/sec)   p_kst 3.130385e-01   p_cons 3.669231e-03   p_joint 1.803846e-02

Joint ci ratio: 7.927717e-02	ci left: 1.648337e-02	ci right 1.785102e-02	k: 2402	n:140000
Cons ci ratio: 1.737772e-01	ci left: 3.306686e-03	ci right 3.942717e-03	k: 506	n:140000
KS ci ratio: 1.551537e-02	ci left: 3.107281e-01	ci right 3.155939e-01	k: 43842	n:140000
ANKIB1   140000 perm   49 sec   (2859 perm/sec)   p_kst 3.131571e-01   p_cons 3.614286e-03   p_joint 1.715714e-02

Joint ci ratio: 6.993913e-02	ci left: 1.979540e-02	ci right 2.123656e-02	k: 3076	n:150000
Cons ci ratio: 1.685422e-01	ci left: 3.290434e-03	ci right 3.902335e-03	k: 538	n:150000
KS ci ratio: 1.570789e-02	ci left: 2.910699e-01	ci right 2.956848e-01	k: 44006	n:150000
ANKIB1   150000 perm   53 sec   (2824 perm/sec)   p_kst 2.933733e-01   p_cons 3.586667e-03   p_joint 2.050667e-02

Joint ci ratio: 6.829553e-02	ci left: 1.948551e-02	ci right 2.086945e-02	k: 3227	n:160000
Cons ci ratio: 1.627552e-01	ci left: 3.318432e-03	ci right 3.912278e-03	k: 577	n:160000
KS ci ratio: 1.520883e-02	ci left: 2.911509e-01	ci right 2.956191e-01	k: 46941	n:160000
ANKIB1   160000 perm   57 sec   (2815 perm/sec)   p_kst 2.933812e-01   p_cons 3.606250e-03   p_joint 2.016875e-02

Joint ci ratio: 7.342823e-02	ci left: 1.588243e-02	ci right 1.709884e-02	k: 2802	n:170000
Cons ci ratio: 1.568894e-01	ci left: 3.371712e-03	ci right 3.951300e-03	k: 621	n:170000
KS ci ratio: 1.477147e-02	ci left: 2.907490e-01	ci right 2.950816e-01	k: 49795	n:170000
ANKIB1   170000 perm   60 sec   (2811 perm/sec)   p_kst 2.929118e-01   p_cons 3.652941e-03   p_joint 1.648235e-02

Joint ci ratio: 6.901869e-02	ci left: 1.699755e-02	ci right 1.821806e-02	k: 3168	n:180000
Cons ci ratio: 1.532403e-01	ci left: 3.344591e-03	ci right 3.904917e-03	k: 651	n:180000
KS ci ratio: 1.435705e-02	ci left: 2.907594e-01	ci right 2.949695e-01	k: 52715	n:180000
ANKIB1   180000 perm   64 sec   (2796 perm/sec)   p_kst 2.928611e-01   p_cons 3.616667e-03   p_joint 1.760000e-02

Joint ci ratio: 6.846044e-02	ci left: 1.638209e-02	ci right 1.754851e-02	k: 3222	n:190000
Cons ci ratio: 1.487440e-01	ci left: 3.371136e-03	ci right 3.917864e-03	k: 691	n:190000
KS ci ratio: 1.396342e-02	ci left: 2.911326e-01	ci right 2.952316e-01	k: 55704	n:190000
ANKIB1   190000 perm   68 sec   (2778 perm/sec)   p_kst 2.931789e-01   p_cons 3.636842e-03   p_joint 1.695789e-02

Joint ci ratio: 6.653406e-02	ci left: 1.649206e-02	ci right 1.763200e-02	k: 3411	n:200000
Cons ci ratio: 1.445226e-01	ci left: 3.400063e-03	ci right 3.934482e-03	k: 732	n:200000
KS ci ratio: 1.361263e-02	ci left: 2.911006e-01	ci right 2.950954e-01	k: 58619	n:200000
ANKIB1   200000 perm   72 sec   (2767 perm/sec)   p_kst 2.930950e-01   p_cons 3.660000e-03   p_joint 1.705500e-02

Joint ci ratio: 6.534563e-02	ci left: 1.629678e-02	ci right 1.740233e-02	k: 3537	n:210000
Cons ci ratio: 1.414692e-01	ci left: 3.385082e-03	ci right 3.904957e-03	k: 764	n:210000
KS ci ratio: 1.327526e-02	ci left: 2.914388e-01	ci right 2.953383e-01	k: 61611	n:210000
ANKIB1   210000 perm   76 sec   (2749 perm/sec)   p_kst 2.933857e-01   p_cons 3.638095e-03   p_joint 1.684286e-02

Joint ci ratio: 6.487894e-02	ci left: 1.579287e-02	ci right 1.685629e-02	k: 3590	n:220000
Cons ci ratio: 1.374807e-01	ci left: 3.428629e-03	ci right 3.939131e-03	k: 809	n:220000
KS ci ratio: 1.296519e-02	ci left: 2.916385e-01	ci right 2.954488e-01	k: 64579	n:220000
ANKIB1   220000 perm   80 sec   (2736 perm/sec)   p_kst 2.935409e-01   p_cons 3.677273e-03   p_joint 1.631818e-02

Joint ci ratio: 6.321557e-02	ci left: 1.592339e-02	ci right 1.696711e-02	k: 3781	n:230000
Cons ci ratio: 1.342059e-01	ci left: 3.447563e-03	ci right 3.947681e-03	k: 849	n:230000
KS ci ratio: 1.268452e-02	ci left: 2.915396e-01	ci right 2.952656e-01	k: 67482	n:230000
ANKIB1   230000 perm   85 sec   (2721 perm/sec)   p_kst 2.934000e-01   p_cons 3.691304e-03   p_joint 1.643913e-02

Joint ci ratio: 5.455644e-02	ci left: 2.048350e-02	ci right 2.163644e-02	k: 5053	n:240000
Cons ci ratio: 1.310807e-01	ci left: 3.469082e-03	ci right 3.959690e-03	k: 890	n:240000
KS ci ratio: 1.242145e-02	ci left: 2.914457e-01	ci right 2.950926e-01	k: 70384	n:240000
ANKIB1   240000 perm   89 sec   (2705 perm/sec)   p_kst 2.932667e-01   p_cons 3.708333e-03   p_joint 2.105417e-02

Joint ci ratio: 5.398334e-02	ci left: 2.009808e-02	ci right 2.121707e-02	k: 5163	n:250000
Cons ci ratio: 1.285801e-01	ci left: 3.465771e-03	ci right 3.945848e-03	k: 925	n:250000
KS ci ratio: 1.217022e-02	ci left: 2.914918e-01	ci right 2.950650e-01	k: 73319	n:250000
ANKIB1   250000 perm   93 sec   (2688 perm/sec)   p_kst 2.932760e-01   p_cons 3.700000e-03   p_joint 2.065200e-02

Joint ci ratio: 6.081833e-02	ci left: 1.524838e-02	ci right 1.620861e-02	k: 4088	n:260000
Cons ci ratio: 1.257586e-01	ci left: 3.488874e-03	ci right 3.960756e-03	k: 967	n:260000
KS ci ratio: 1.197195e-02	ci left: 2.902105e-01	ci right 2.937096e-01	k: 75909	n:260000
ANKIB1   260000 perm   98 sec   (2664 perm/sec)   p_kst 2.919577e-01   p_cons 3.719231e-03   p_joint 1.572308e-02

Joint ci ratio: 5.968337e-02	ci left: 1.525635e-02	ci right 1.619853e-02	k: 4245	n:270000
Cons ci ratio: 1.236073e-01	ci left: 3.481654e-03	ci right 3.943914e-03	k: 1001	n:270000
KS ci ratio: 1.174811e-02	ci left: 2.902447e-01	ci right 2.936783e-01	k: 78829	n:270000
ANKIB1   270000 perm   102 sec   (2643 perm/sec)   p_kst 2.919593e-01   p_cons 3.707407e-03   p_joint 1.572222e-02

Joint ci ratio: 5.541573e-02	ci left: 1.707037e-02	ci right 1.804680e-02	k: 4915	n:280000
Cons ci ratio: 1.212694e-01	ci left: 3.492330e-03	ci right 3.946608e-03	k: 1040	n:280000
KS ci ratio: 1.153987e-02	ci left: 2.901522e-01	ci right 2.935235e-01	k: 81714	n:280000
ANKIB1   280000 perm   107 sec   (2616 perm/sec)   p_kst 2.918357e-01   p_cons 3.714286e-03   p_joint 1.755357e-02

Joint ci ratio: 4.903117e-02	ci left: 2.103649e-02	ci right 2.209724e-02	k: 6253	n:290000
Cons ci ratio: 1.185644e-01	ci left: 3.532462e-03	ci right 3.980993e-03	k: 1088	n:290000
KS ci ratio: 1.134213e-02	ci left: 2.900736e-01	ci right 2.933858e-01	k: 84601	n:290000
ANKIB1   290000 perm   112 sec   (2597 perm/sec)   p_kst 2.917276e-01   p_cons 3.751724e-03   p_joint 2.156207e-02

Joint ci ratio: 4.838567e-02	ci left: 2.089171e-02	ci right 2.193090e-02	k: 6422	n:300000
Cons ci ratio: 1.164965e-01	ci left: 3.540893e-03	ci right 3.982112e-03	k: 1127	n:300000
KS ci ratio: 1.114972e-02	ci left: 2.901670e-01	ci right 2.934237e-01	k: 87538	n:300000
ANKIB1   300000 perm   116 sec   (2577 perm/sec)   p_kst 2.917933e-01   p_cons 3.756667e-03   p_joint 2.140667e-02

Joint ci ratio: 4.756994e-02	ci left: 2.092533e-02	ci right 2.194816e-02	k: 6644	n:310000
Cons ci ratio: 1.141898e-01	ci left: 3.570779e-03	ci right 4.006320e-03	k: 1173	n:310000
KS ci ratio: 1.096978e-02	ci left: 2.901421e-01	ci right 2.933456e-01	k: 90440	n:310000
ANKIB1   310000 perm   122 sec   (2551 perm/sec)   p_kst 2.917419e-01   p_cons 3.783871e-03   p_joint 2.143226e-02

Joint ci ratio: 4.699383e-02	ci left: 2.078090e-02	ci right 2.178404e-02	k: 6809	n:320000
Cons ci ratio: 1.124320e-01	ci left: 3.571540e-03	ci right 4.000023e-03	k: 1210	n:320000
KS ci ratio: 1.079689e-02	ci left: 2.901722e-01	ci right 2.933253e-01	k: 93359	n:320000
ANKIB1   320000 perm   127 sec   (2529 perm/sec)   p_kst 2.917469e-01   p_cons 3.781250e-03   p_joint 2.127812e-02

Joint ci ratio: 4.614161e-02	ci left: 2.090895e-02	ci right 2.189948e-02	k: 7062	n:330000
Cons ci ratio: 1.107975e-01	ci left: 3.569357e-03	ci right 3.990946e-03	k: 1246	n:330000
KS ci ratio: 1.063474e-02	ci left: 2.900920e-01	ci right 2.931965e-01	k: 96242	n:330000
ANKIB1   330000 perm   132 sec   (2507 perm/sec)   p_kst 2.916424e-01   p_cons 3.775758e-03   p_joint 2.140000e-02

Joint ci ratio: 4.566371e-02	ci left: 2.073005e-02	ci right 2.170167e-02	k: 7212	n:340000
Cons ci ratio: 1.090193e-01	ci left: 3.581650e-03	ci right 3.997466e-03	k: 1287	n:340000
KS ci ratio: 1.047840e-02	ci left: 2.900667e-01	ci right 2.931251e-01	k: 99142	n:340000
ANKIB1   340000 perm   137 sec   (2487 perm/sec)   p_kst 2.915941e-01   p_cons 3.785294e-03   p_joint 2.121176e-02

Joint ci ratio: 4.718622e-02	ci left: 1.888066e-02	ci right 1.979590e-02	k: 6767	n:350000
Cons ci ratio: 1.074052e-01	ci left: 3.587731e-03	ci right 3.997695e-03	k: 1326	n:350000
KS ci ratio: 1.032384e-02	ci left: 2.902401e-01	ci right 2.932548e-01	k: 102111	n:350000
ANKIB1   350000 perm   142 sec   (2457 perm/sec)   p_kst 2.917457e-01   p_cons 3.788571e-03   p_joint 1.933429e-02

Joint ci ratio: 4.716719e-02	ci left: 1.838079e-02	ci right 1.927143e-02	k: 6776	n:360000
Cons ci ratio: 1.057054e-01	ci left: 3.604334e-03	ci right 4.009273e-03	k: 1369	n:360000
KS ci ratio: 1.017879e-02	ci left: 2.902876e-01	ci right 2.932602e-01	k: 105038	n:360000
ANKIB1   360000 perm   148 sec   (2436 perm/sec)   p_kst 2.917722e-01   p_cons 3.802778e-03   p_joint 1.882222e-02

Joint ci ratio: 5.066911e-02	ci left: 1.551540e-02	ci right 1.632464e-02	k: 5889	n:370000
Cons ci ratio: 1.038628e-01	ci left: 3.635885e-03	ci right 4.036812e-03	k: 1418	n:370000
KS ci ratio: 1.003759e-02	ci left: 2.904192e-01	ci right 2.933516e-01	k: 107997	n:370000
ANKIB1   370000 perm   153 sec   (2416 perm/sec)   p_kst 2.918838e-01   p_cons 3.832432e-03   p_joint 1.591622e-02

Joint ci ratio: 4.455540e-02	ci left: 1.951818e-02	ci right 2.041022e-02	k: 7585	n:380000
Cons ci ratio: 1.028187e-01	ci left: 3.614545e-03	ci right 4.008870e-03	k: 1447	n:380000
KS ci ratio: 9.904756e-03	ci left: 2.904337e-01	ci right 2.933273e-01	k: 110914	n:380000
ANKIB1   380000 perm   159 sec   (2396 perm/sec)   p_kst 2.918789e-01   p_cons 3.807895e-03   p_joint 1.996053e-02

Joint ci ratio: 4.522817e-02	ci left: 1.846985e-02	ci right 1.932706e-02	k: 7369	n:390000
Cons ci ratio: 1.014613e-01	ci left: 3.619310e-03	ci right 4.008632e-03	k: 1486	n:390000
KS ci ratio: 9.781790e-03	ci left: 2.902481e-01	ci right 2.931037e-01	k: 113753	n:390000
ANKIB1   390000 perm   165 sec   (2362 perm/sec)   p_kst 2.916744e-01   p_cons 3.810256e-03   p_joint 1.889487e-02

Joint ci ratio: 4.211732e-02	ci left: 2.075086e-02	ci right 2.164609e-02	k: 8478	n:400000
Cons ci ratio: 1.003877e-01	ci left: 3.606807e-03	ci right 3.990436e-03	k: 1518	n:400000
KS ci ratio: 9.661536e-03	ci left: 2.901468e-01	ci right 2.929662e-01	k: 116622	n:400000
ANKIB1   400000 perm   171 sec   (2343 perm/sec)   p_kst 2.915550e-01   p_cons 3.795000e-03   p_joint 2.119500e-02

Joint ci ratio: 4.386648e-02	ci left: 1.868562e-02	ci right 1.952607e-02	k: 7832	n:410000
Cons ci ratio: 9.902749e-02	ci left: 3.618721e-03	ci right 3.998100e-03	k: 1560	n:410000
KS ci ratio: 9.541440e-03	ci left: 2.902310e-01	ci right 2.930159e-01	k: 119565	n:410000
ANKIB1   410000 perm   177 sec   (2323 perm/sec)   p_kst 2.916220e-01   p_cons 3.804878e-03   p_joint 1.910244e-02

Outputting figure to mutsig2_images.part000000000007/ANKIB1.9_3346_410000_0.29162_0.0038049_0.019102.png
                gene_name: ANKIB1
               theta_stop: 0.099 
                    nperm: 410000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.0038 
      ci_cons_bounds_left: 0.0036 
     ci_cons_bounds_right: 0.0040 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 19 percent done.
ANKRD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.939316e-03	ci left: 9.661506e-01	ci right 9.729722e-01	k: 9697	n:10000
Cons ci ratio: 5.372743e-02	ci left: 3.379640e-01	ci right 3.567250e-01	k: 3473	n:10000
KS ci ratio: 1.206707e-02	ci left: 9.078193e-01	ci right 9.189385e-01	k: 9135	n:10000
ANKRD11   10000 perm   2 sec   (4024 perm/sec)   p_kst 9.135000e-01   p_cons 3.473000e-01   p_joint 9.697000e-01

Outputting figure to mutsig2_images.part000000000007/ANKRD11.9_8036_10000_0.9135_0.3473_0.9697.png
                gene_name: ANKRD11
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 21 percent done.
ANGPTL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.622383e-02	ci left: 3.178069e-01	ci right 3.362939e-01	k: 3270	n:10000
Cons ci ratio: 8.928483e-02	ci left: 1.543368e-01	ci right 1.688609e-01	k: 1615	n:10000
KS ci ratio: 8.935079e-02	ci left: 1.541405e-01	ci right 1.686573e-01	k: 1613	n:10000
ANGPTL2   10000 perm   2 sec   (4847 perm/sec)   p_kst 1.613000e-01   p_cons 1.615000e-01   p_joint 3.270000e-01

Outputting figure to mutsig2_images.part000000000007/ANGPTL2.8_1498_10000_0.1613_0.1615_0.327.png
                gene_name: ANGPTL2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 23 percent done.
ANKFN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.107859e-02	ci left: 9.207974e-01	ci right 9.311528e-01	k: 9261	n:10000
Cons ci ratio: 7.551511e-03	ci left: 9.604756e-01	ci right 9.678508e-01	k: 9643	n:10000
KS ci ratio: 3.602251e-02	ci left: 5.322739e-01	ci right 5.519016e-01	k: 5421	n:10000
ANKFN1   10000 perm   2 sec   (4688 perm/sec)   p_kst 5.421000e-01   p_cons 9.643000e-01   p_joint 9.261000e-01

Outputting figure to mutsig2_images.part000000000007/ANKFN1.8_2360_10000_0.5421_0.9643_0.9261.png
                gene_name: ANKFN1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 25 percent done.
ANKRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.895557e-02	ci left: 8.026788e-01	ci right 8.181399e-01	k: 8105	n:10000
KS ci ratio: 3.225711e-02	ci left: 5.865064e-01	ci right 6.058375e-01	k: 5962	n:10000
ANKRD1   10000 perm   2 sec   (4975 perm/sec)   p_kst 5.962000e-01   p_cons 8.105000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/ANKRD1.6_996_10000_0.5962_0.8105_1.png
                gene_name: ANKRD1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
AMIGO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.318984e-02	ci left: 5.726613e-01	ci right 5.920907e-01	k: 5824	n:10000
Cons ci ratio: 5.318683e-02	ci left: 3.425342e-01	ci right 3.613521e-01	k: 3519	n:10000
KS ci ratio: 3.780791e-02	ci left: 5.081525e-01	ci right 5.278370e-01	k: 5180	n:10000
AMIGO2   10000 perm   2 sec   (5172 perm/sec)   p_kst 5.180000e-01   p_cons 3.519000e-01   p_joint 5.824000e-01

Outputting figure to mutsig2_images.part000000000007/AMIGO2.5_1573_10000_0.518_0.3519_0.5824.png
                gene_name: AMIGO2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 28 percent done.
AMOT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.335644e-01	ci left: 7.398022e-02	ci right 8.466637e-02	k: 792	n:10000
Cons ci ratio: 2.510420e-01	ci left: 2.080800e-02	ci right 2.687375e-02	k: 237	n:10000
KS ci ratio: 4.781136e-02	ci left: 3.922704e-01	ci right 4.115868e-01	k: 4019	n:10000
AMOT   10000 perm   2 sec   (4899 perm/sec)   p_kst 4.019000e-01   p_cons 2.370000e-02   p_joint 7.920000e-02

Joint ci ratio: 1.052995e-01	ci left: 6.137797e-02	ci right 6.824922e-02	k: 1295	n:20000
Cons ci ratio: 1.749006e-01	ci left: 2.235394e-02	ci right 2.668581e-02	k: 489	n:20000
KS ci ratio: 3.352087e-02	ci left: 3.992330e-01	ci right 4.128943e-01	k: 8121	n:20000
AMOT   20000 perm   5 sec   (4320 perm/sec)   p_kst 4.060500e-01   p_cons 2.445000e-02   p_joint 6.475000e-02

Joint ci ratio: 8.812986e-02	ci left: 5.913374e-02	ci right 6.461815e-02	k: 1855	n:30000
Cons ci ratio: 1.439147e-01	ci left: 2.239414e-02	ci right 2.589885e-02	k: 723	n:30000
KS ci ratio: 2.735446e-02	ci left: 4.007682e-01	ci right 4.119166e-01	k: 12190	n:30000
AMOT   30000 perm   7 sec   (4018 perm/sec)   p_kst 4.063333e-01   p_cons 2.410000e-02   p_joint 6.183333e-02

Joint ci ratio: 8.128208e-02	ci left: 5.271214e-02	ci right 5.720274e-02	k: 2197	n:40000
Cons ci ratio: 1.254580e-01	ci left: 2.232840e-02	ci right 2.534127e-02	k: 952	n:40000
KS ci ratio: 2.370518e-02	ci left: 4.012069e-01	ci right 4.108568e-01	k: 16241	n:40000
AMOT   40000 perm   11 sec   (3790 perm/sec)   p_kst 4.060250e-01   p_cons 2.380000e-02   p_joint 5.492500e-02

Joint ci ratio: 8.108056e-02	ci left: 4.284636e-02	ci right 4.648675e-02	k: 2232	n:50000
Cons ci ratio: 1.120808e-01	ci left: 2.254001e-02	ci right 2.523566e-02	k: 1193	n:50000
KS ci ratio: 2.120298e-02	ci left: 4.017111e-01	ci right 4.103399e-01	k: 20301	n:50000
AMOT   50000 perm   13 sec   (3759 perm/sec)   p_kst 4.060200e-01   p_cons 2.386000e-02   p_joint 4.464000e-02

Joint ci ratio: 7.211542e-02	ci left: 4.523828e-02	ci right 4.863905e-02	k: 2815	n:60000
Cons ci ratio: 1.003525e-01	ci left: 2.355408e-02	ci right 2.605884e-02	k: 1487	n:60000
KS ci ratio: 1.935450e-02	ci left: 4.021168e-01	ci right 4.099923e-01	k: 24363	n:60000
AMOT   60000 perm   16 sec   (3693 perm/sec)   p_kst 4.060500e-01   p_cons 2.478333e-02   p_joint 4.691667e-02

Joint ci ratio: 6.160919e-02	ci left: 5.298458e-02	ci right 5.636674e-02	k: 3826	n:70000
Cons ci ratio: 9.307349e-02	ci left: 2.356281e-02	ci right 2.587682e-02	k: 1729	n:70000
KS ci ratio: 1.793559e-02	ci left: 4.019595e-01	ci right 4.092484e-01	k: 28392	n:70000
AMOT   70000 perm   19 sec   (3652 perm/sec)   p_kst 4.056000e-01   p_cons 2.470000e-02   p_joint 5.465714e-02

Outputting figure to mutsig2_images.part000000000007/AMOT.5_3299_70000_0.4056_0.0247_0.054657.png
                gene_name: AMOT
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.056 

Current progress: 30 percent done.
AMPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.214176e-02	ci left: 4.539876e-01	ci right 4.736335e-01	k: 4638	n:10000
Cons ci ratio: 9.086581e-02	ci left: 1.497240e-01	ci right 1.640764e-01	k: 1568	n:10000
KS ci ratio: 1.456751e-02	ci left: 8.721407e-01	ci right 8.850379e-01	k: 8787	n:10000
AMPD2   10000 perm   2 sec   (5222 perm/sec)   p_kst 8.787000e-01   p_cons 1.568000e-01   p_joint 4.638000e-01

Outputting figure to mutsig2_images.part000000000007/AMPD2.5_2753_10000_0.8787_0.1568_0.4638.png
                gene_name: AMPD2
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 32 percent done.
AMY2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.869771e-02	ci left: 3.835091e-01	ci right 4.027532e-01	k: 3931	n:10000
Cons ci ratio: 8.767228e-02	ci left: 1.592465e-01	ci right 1.739483e-01	k: 1665	n:10000
KS ci ratio: 3.862612e-02	ci left: 4.974503e-01	ci right 5.171454e-01	k: 5073	n:10000
AMY2A   10000 perm   2 sec   (4452 perm/sec)   p_kst 5.073000e-01   p_cons 1.665000e-01   p_joint 3.931000e-01

Outputting figure to mutsig2_images.part000000000007/AMY2A.5_1576_10000_0.5073_0.1665_0.3931.png
                gene_name: AMY2A
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 33 percent done.
ANGEL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.720675e-02	ci left: 5.161571e-01	ci right 5.358278e-01	k: 5260	n:10000
Cons ci ratio: 2.529504e-02	ci left: 6.969615e-01	ci right 7.149184e-01	k: 7060	n:10000
KS ci ratio: 6.767870e-02	ci left: 2.426241e-01	ci right 2.597210e-01	k: 2511	n:10000
ANGEL2   10000 perm   2 sec   (5545 perm/sec)   p_kst 2.511000e-01   p_cons 7.060000e-01   p_joint 5.260000e-01

Outputting figure to mutsig2_images.part000000000007/ANGEL2.5_1671_10000_0.2511_0.706_0.526.png
                gene_name: ANGEL2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 35 percent done.
ANGPT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.956641e-02	ci left: 2.931092e-01	ci right 3.112062e-01	k: 3021	n:10000
Cons ci ratio: 9.603921e-02	ci left: 1.358995e-01	ci right 1.497093e-01	k: 1427	n:10000
KS ci ratio: 4.565297e-02	ci left: 4.145864e-01	ci right 4.340577e-01	k: 4243	n:10000
ANGPT1   10000 perm   2 sec   (5675 perm/sec)   p_kst 4.243000e-01   p_cons 1.427000e-01   p_joint 3.021000e-01

Outputting figure to mutsig2_images.part000000000007/ANGPT1.5_1533_10000_0.4243_0.1427_0.3021.png
                gene_name: ANGPT1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 37 percent done.
ANGPT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.514284e-02	ci left: 4.200689e-01	ci right 4.395720e-01	k: 4298	n:10000
Cons ci ratio: 5.812920e-02	ci left: 3.034210e-01	ci right 3.216883e-01	k: 3125	n:10000
KS ci ratio: 4.265357e-02	ci left: 4.479986e-01	ci right 4.676260e-01	k: 4578	n:10000
ANGPT2   10000 perm   2 sec   (5954 perm/sec)   p_kst 4.578000e-01   p_cons 3.125000e-01   p_joint 4.298000e-01

Outputting figure to mutsig2_images.part000000000007/ANGPT2.5_1527_10000_0.4578_0.3125_0.4298.png
                gene_name: ANGPT2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 39 percent done.
ANKAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.042447e-02	ci left: 3.670904e-01	ci right 3.861815e-01	k: 3766	n:10000
KS ci ratio: 2.333176e-02	ci left: 7.296672e-01	ci right 7.469937e-01	k: 7384	n:10000
ANKAR   10000 perm   2 sec   (4183 perm/sec)   p_kst 7.384000e-01   p_cons 3.766000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/ANKAR.5_4393_10000_0.7384_0.3766_1.png
                gene_name: ANKAR
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
ANKDD1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.383317e-02	ci left: 7.212834e-01	ci right 7.387824e-01	k: 7301	n:10000
Cons ci ratio: 2.660544e-02	ci left: 6.753898e-01	ci right 6.937026e-01	k: 6846	n:10000
KS ci ratio: 3.125513e-02	ci left: 6.016648e-01	ci right 6.208704e-01	k: 6113	n:10000
ANKDD1A   10000 perm   2 sec   (5505 perm/sec)   p_kst 6.113000e-01   p_cons 6.846000e-01   p_joint 7.301000e-01

Outputting figure to mutsig2_images.part000000000007/ANKDD1A.5_1629_10000_0.6113_0.6846_0.7301.png
                gene_name: ANKDD1A
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 42 percent done.
ANKMY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.269208e-02	ci left: 7.403801e-01	ci right 7.574747e-01	k: 7490	n:10000
KS ci ratio: 2.039378e-02	ci left: 7.788424e-01	ci right 7.949902e-01	k: 7870	n:10000
ANKMY2   10000 perm   2 sec   (5153 perm/sec)   p_kst 7.870000e-01   p_cons 7.490000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/ANKMY2.5_1366_10000_0.787_0.749_1.png
                gene_name: ANKMY2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
ALS2CR11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.461249e-02	ci left: 1.691711e-01	ci right 1.842178e-01	k: 1766	n:10000
Cons ci ratio: 8.496310e-02	ci left: 1.679914e-01	ci right 1.829981e-01	k: 1754	n:10000
KS ci ratio: 7.287598e-02	ci left: 2.161558e-01	ci right 2.326051e-01	k: 2243	n:10000
ALS2CR11   10000 perm   3 sec   (3728 perm/sec)   p_kst 2.243000e-01   p_cons 1.754000e-01   p_joint 1.766000e-01

Outputting figure to mutsig2_images.part000000000007/ALS2CR11.4_5674_10000_0.2243_0.1754_0.1766.png
                gene_name: ALS2CR11
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 46 percent done.
AMACR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.673202e-02	ci left: 5.225625e-01	ci right 5.422186e-01	k: 5324	n:10000
Cons ci ratio: 1.577252e-02	ci left: 8.537584e-01	ci right 8.674308e-01	k: 8607	n:10000
KS ci ratio: 5.941142e-02	ci left: 2.941996e-01	ci right 3.123152e-01	k: 3032	n:10000
AMACR   10000 perm   2 sec   (5276 perm/sec)   p_kst 3.032000e-01   p_cons 8.607000e-01   p_joint 5.324000e-01

Outputting figure to mutsig2_images.part000000000007/AMACR.4_1499_10000_0.3032_0.8607_0.5324.png
                gene_name: AMACR
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 47 percent done.
AMBRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.977580e-02	ci left: 3.731590e-01	ci right 3.923094e-01	k: 3827	n:10000
Cons ci ratio: 7.202812e-02	ci left: 2.202021e-01	ci right 2.367564e-01	k: 2284	n:10000
KS ci ratio: 5.049971e-02	ci left: 3.663941e-01	ci right 3.854782e-01	k: 3759	n:10000
AMBRA1   10000 perm   2 sec   (4260 perm/sec)   p_kst 3.759000e-01   p_cons 2.284000e-01   p_joint 3.827000e-01

Outputting figure to mutsig2_images.part000000000007/AMBRA1.4_3699_10000_0.3759_0.2284_0.3827.png
                gene_name: AMBRA1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 49 percent done.
AMDHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.175519e-02	ci left: 2.782460e-01	ci right 2.960782e-01	k: 2871	n:10000
Cons ci ratio: 5.148235e-02	ci left: 3.574437e-01	ci right 3.764339e-01	k: 3669	n:10000
KS ci ratio: 6.884996e-02	ci left: 2.362992e-01	ci right 2.532497e-01	k: 2447	n:10000
AMDHD1   10000 perm   2 sec   (5676 perm/sec)   p_kst 2.447000e-01   p_cons 3.669000e-01   p_joint 2.871000e-01

Outputting figure to mutsig2_images.part000000000007/AMDHD1.4_1317_10000_0.2447_0.3669_0.2871.png
                gene_name: AMDHD1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 51 percent done.
AMICA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.643344e-02	ci left: 1.349198e-01	ci right 1.486895e-01	k: 1417	n:10000
Cons ci ratio: 9.805070e-02	ci left: 1.310025e-01	ci right 1.446093e-01	k: 1377	n:10000
KS ci ratio: 1.052552e-01	ci left: 1.153530e-01	ci right 1.282683e-01	k: 1217	n:10000
AMICA1   10000 perm   2 sec   (5008 perm/sec)   p_kst 1.217000e-01   p_cons 1.377000e-01   p_joint 1.417000e-01

Joint ci ratio: 8.255917e-02	ci left: 9.710247e-02	ci right 1.055138e-01	k: 2025	n:20000
Cons ci ratio: 6.907211e-02	ci left: 1.338884e-01	ci right 1.435169e-01	k: 2773	n:20000
KS ci ratio: 7.392778e-02	ci left: 1.186750e-01	ci right 1.278348e-01	k: 2464	n:20000
AMICA1   20000 perm   4 sec   (4763 perm/sec)   p_kst 1.232000e-01   p_cons 1.386500e-01   p_joint 1.012500e-01

Outputting figure to mutsig2_images.part000000000007/AMICA1.4_1238_20000_0.1232_0.13865_0.10125.png
                gene_name: AMICA1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.11 

Current progress: 53 percent done.
AMZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.103792e-02	ci left: 1.492334e-01	ci right 1.635673e-01	k: 1563	n:10000
Cons ci ratio: 4.202335e-02	ci left: 4.553853e-01	ci right 4.750350e-01	k: 4652	n:10000
KS ci ratio: 1.223415e-01	ci left: 8.737675e-02	ci right 9.886154e-02	k: 930	n:10000
AMZ1   10000 perm   2 sec   (5676 perm/sec)   p_kst 9.300000e-02   p_cons 4.652000e-01   p_joint 1.563000e-01

Joint ci ratio: 6.200576e-02	ci left: 1.613609e-01	ci right 1.717363e-01	k: 3330	n:20000
Cons ci ratio: 3.041652e-02	ci left: 4.467325e-01	ci right 4.605810e-01	k: 9073	n:20000
KS ci ratio: 8.658713e-02	ci left: 8.891121e-02	ci right 9.700757e-02	k: 1858	n:20000
AMZ1   20000 perm   4 sec   (5295 perm/sec)   p_kst 9.290000e-02   p_cons 4.536500e-01   p_joint 1.665000e-01

Outputting figure to mutsig2_images.part000000000007/AMZ1.4_1521_20000_0.0929_0.45365_0.1665.png
                gene_name: AMZ1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 54 percent done.
ANAPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.133354e-02	ci left: 7.631424e-01	ci right 7.796992e-01	k: 7715	n:10000
Cons ci ratio: 5.577984e-02	ci left: 3.212809e-01	ci right 3.398179e-01	k: 3305	n:10000
KS ci ratio: 3.208325e-02	ci left: 5.891158e-01	ci right 6.084267e-01	k: 5988	n:10000
ANAPC1   10000 perm   2 sec   (4353 perm/sec)   p_kst 5.988000e-01   p_cons 3.305000e-01   p_joint 7.715000e-01

Outputting figure to mutsig2_images.part000000000007/ANAPC1.4_6023_10000_0.5988_0.3305_0.7715.png
                gene_name: ANAPC1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 56 percent done.
ANAPC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.699839e-02	ci left: 5.189593e-01	ci right 5.386240e-01	k: 5288	n:10000
KS ci ratio: 2.791418e-02	ci left: 6.541423e-01	ci right 6.727624e-01	k: 6635	n:10000
ANAPC4   10000 perm   2 sec   (5078 perm/sec)   p_kst 6.635000e-01   p_cons 5.288000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/ANAPC4.4_2539_10000_0.6635_0.5288_1.png
                gene_name: ANAPC4
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
ANAPC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.947870e-02	ci left: 1.276742e-01	ci right 1.411395e-01	k: 1343	n:10000
Cons ci ratio: 4.596265e-02	ci left: 4.112975e-01	ci right 4.307486e-01	k: 4210	n:10000
KS ci ratio: 1.785097e-01	ci left: 4.188120e-02	ci right 5.018585e-02	k: 459	n:10000
ANAPC7   10000 perm   2 sec   (4777 perm/sec)   p_kst 4.590000e-02   p_cons 4.210000e-01   p_joint 1.343000e-01

Joint ci ratio: 6.984875e-02	ci left: 1.312774e-01	ci right 1.408286e-01	k: 2720	n:20000
Cons ci ratio: 3.233737e-02	ci left: 4.166386e-01	ci right 4.303836e-01	k: 8470	n:20000
KS ci ratio: 1.294313e-01	ci left: 4.100525e-02	ci right 4.672831e-02	k: 876	n:20000
ANAPC7   20000 perm   4 sec   (4584 perm/sec)   p_kst 4.380000e-02   p_cons 4.235000e-01   p_joint 1.360000e-01

Joint ci ratio: 6.654801e-02	ci left: 1.002063e-01	ci right 1.071374e-01	k: 3109	n:30000
Cons ci ratio: 2.545344e-02	ci left: 4.358702e-01	ci right 4.471412e-01	k: 13245	n:30000
KS ci ratio: 1.056181e-01	ci left: 4.157680e-02	ci right 4.624538e-02	k: 1316	n:30000
ANAPC7   30000 perm   7 sec   (4500 perm/sec)   p_kst 4.386667e-02   p_cons 4.415000e-01   p_joint 1.036333e-01

Joint ci ratio: 6.619670e-02	ci left: 7.792569e-02	ci right 8.328538e-02	k: 3223	n:40000
Cons ci ratio: 2.204141e-02	ci left: 4.366756e-01	ci right 4.464329e-01	k: 17662	n:40000
KS ci ratio: 9.010813e-02	ci left: 4.313582e-02	ci right 4.723054e-02	k: 1806	n:40000
ANAPC7   40000 perm   9 sec   (4466 perm/sec)   p_kst 4.515000e-02   p_cons 4.415500e-01   p_joint 8.057500e-02

Outputting figure to mutsig2_images.part000000000007/ANAPC7.4_1848_40000_0.04515_0.44155_0.080575.png
                gene_name: ANAPC7
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.083 

Current progress: 60 percent done.
ANKLE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.992458e-02	ci left: 1.860928e-01	ci right 2.016859e-01	k: 1938	n:10000
Cons ci ratio: 8.227486e-02	ci left: 1.773337e-01	ci right 1.926503e-01	k: 1849	n:10000
KS ci ratio: 7.795978e-02	ci left: 1.938730e-01	ci right 2.097011e-01	k: 2017	n:10000
ANKLE2   10000 perm   2 sec   (4927 perm/sec)   p_kst 2.017000e-01   p_cons 1.849000e-01   p_joint 1.938000e-01

Outputting figure to mutsig2_images.part000000000007/ANKLE2.4_2869_10000_0.2017_0.1849_0.1938.png
                gene_name: ANKLE2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 61 percent done.
ALS2CL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.610433e-02	ci left: 4.098026e-01	ci right 4.292443e-01	k: 4195	n:10000
Cons ci ratio: 8.824489e-02	ci left: 1.574787e-01	ci right 1.721171e-01	k: 1647	n:10000
KS ci ratio: 1.935551e-02	ci left: 7.960815e-01	ci right 8.117411e-01	k: 8040	n:10000
ALS2CL   10000 perm   2 sec   (5268 perm/sec)   p_kst 8.040000e-01   p_cons 1.647000e-01   p_joint 4.195000e-01

Outputting figure to mutsig2_images.part000000000007/ALS2CL.3_2962_10000_0.804_0.1647_0.4195.png
                gene_name: ALS2CL
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 63 percent done.
ALS2CR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.948178e-02	ci left: 2.937039e-01	ci right 3.118111e-01	k: 3027	n:10000
Cons ci ratio: 3.430777e-02	ci left: 5.564183e-01	ci right 5.759431e-01	k: 5662	n:10000
KS ci ratio: 1.092784e-01	ci left: 1.077365e-01	ci right 1.202894e-01	k: 1139	n:10000
ALS2CR8   10000 perm   2 sec   (5099 perm/sec)   p_kst 1.139000e-01   p_cons 5.662000e-01   p_joint 3.027000e-01

Joint ci ratio: 4.391970e-02	ci left: 2.785518e-01	ci right 2.911108e-01	k: 5696	n:20000
Cons ci ratio: 2.402211e-02	ci left: 5.641559e-01	ci right 5.779235e-01	k: 11421	n:20000
KS ci ratio: 7.649875e-02	ci left: 1.115930e-01	ci right 1.205189e-01	k: 2320	n:20000
ALS2CR8   20000 perm   4 sec   (4856 perm/sec)   p_kst 1.160000e-01   p_cons 5.710500e-01   p_joint 2.848000e-01

Outputting figure to mutsig2_images.part000000000007/ALS2CR8.3_2234_20000_0.116_0.57105_0.2848.png
                gene_name: ALS2CR8
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 65 percent done.
AMBN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.308071e-01	ci left: 7.698582e-02	ci right 8.785890e-02	k: 823	n:10000
Cons ci ratio: 1.595841e-01	ci left: 5.234307e-02	ci right 6.151717e-02	k: 568	n:10000
KS ci ratio: 4.627510e-02	ci left: 4.080090e-01	ci right 4.274390e-01	k: 4177	n:10000
AMBN   10000 perm   2 sec   (6098 perm/sec)   p_kst 4.177000e-01   p_cons 5.680000e-02   p_joint 8.230000e-02

Joint ci ratio: 8.671576e-02	ci left: 8.866611e-02	ci right 9.675275e-02	k: 1853	n:20000
Cons ci ratio: 1.123232e-01	ci left: 5.416716e-02	ci right 6.066226e-02	k: 1147	n:20000
KS ci ratio: 3.292368e-02	ci left: 4.079098e-01	ci right 4.216150e-01	k: 8295	n:20000
AMBN   20000 perm   4 sec   (5232 perm/sec)   p_kst 4.147500e-01   p_cons 5.735000e-02   p_joint 9.265000e-02

Joint ci ratio: 8.133187e-02	ci left: 6.893634e-02	ci right 7.481356e-02	k: 2155	n:30000
Cons ci ratio: 9.823677e-02	ci left: 4.791886e-02	ci right 5.290200e-02	k: 1511	n:30000
KS ci ratio: 2.596555e-02	ci left: 4.260853e-01	ci right 4.373279e-01	k: 12951	n:30000
AMBN   30000 perm   6 sec   (5180 perm/sec)   p_kst 4.317000e-01   p_cons 5.036667e-02   p_joint 7.183333e-02

Outputting figure to mutsig2_images.part000000000007/AMBN.3_1396_30000_0.4317_0.050367_0.071833.png
                gene_name: AMBN
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.075 

Current progress: 67 percent done.
AMFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.511594e-02	ci left: 2.572598e-01	ci right 2.746767e-01	k: 2659	n:10000
Cons ci ratio: 2.743868e-01	ci left: 1.725330e-02	ci right 2.283124e-02	k: 199	n:10000
KS ci ratio: 2.780176e-02	ci left: 6.559541e-01	ci right 6.745495e-01	k: 6653	n:10000
AMFR   10000 perm   2 sec   (5999 perm/sec)   p_kst 6.653000e-01   p_cons 1.990000e-02   p_joint 2.659000e-01

Joint ci ratio: 4.437134e-02	ci left: 2.744301e-01	ci right 2.869337e-01	k: 5613	n:20000
Cons ci ratio: 1.970633e-01	ci left: 1.748601e-02	ci right 2.135550e-02	k: 387	n:20000
KS ci ratio: 1.975895e-02	ci left: 6.564509e-01	ci right 6.696016e-01	k: 13261	n:20000
AMFR   20000 perm   4 sec   (5202 perm/sec)   p_kst 6.630500e-01   p_cons 1.935000e-02   p_joint 2.806500e-01

Joint ci ratio: 3.508547e-02	ci left: 2.886491e-01	ci right 2.989908e-01	k: 8814	n:30000
Cons ci ratio: 1.606216e-01	ci left: 1.790127e-02	ci right 2.105943e-02	k: 583	n:30000
KS ci ratio: 1.611588e-02	ci left: 6.581543e-01	ci right 6.688807e-01	k: 19906	n:30000
AMFR   30000 perm   6 sec   (4843 perm/sec)   p_kst 6.635333e-01   p_cons 1.943333e-02   p_joint 2.938000e-01

Joint ci ratio: 3.603761e-02	ci left: 2.241443e-01	ci right 2.323952e-01	k: 9130	n:40000
Cons ci ratio: 1.378149e-01	ci left: 1.845721e-02	ci right 2.121312e-02	k: 792	n:40000
KS ci ratio: 1.392196e-02	ci left: 6.599991e-01	ci right 6.692770e-01	k: 26586	n:40000
AMFR   40000 perm   8 sec   (4747 perm/sec)   p_kst 6.646500e-01   p_cons 1.980000e-02   p_joint 2.282500e-01

Joint ci ratio: 2.895198e-02	ci left: 2.643801e-01	ci right 2.721668e-01	k: 13413	n:50000
Cons ci ratio: 1.229654e-01	ci left: 1.869381e-02	ci right 2.116237e-02	k: 995	n:50000
KS ci ratio: 1.243687e-02	ci left: 6.610440e-01	ci right 6.693368e-01	k: 33260	n:50000
AMFR   50000 perm   11 sec   (4599 perm/sec)   p_kst 6.652000e-01   p_cons 1.990000e-02   p_joint 2.682600e-01

Joint ci ratio: 2.591396e-02	ci left: 2.724922e-01	ci right 2.796629e-01	k: 16564	n:60000
Cons ci ratio: 1.113614e-01	ci left: 1.910545e-02	ci right 2.137463e-02	k: 1213	n:60000
KS ci ratio: 1.138729e-02	ci left: 6.600707e-01	ci right 6.676468e-01	k: 39832	n:60000
AMFR   60000 perm   13 sec   (4524 perm/sec)   p_kst 6.638667e-01   p_cons 2.021667e-02   p_joint 2.760667e-01

Joint ci ratio: 2.496511e-02	ci left: 2.572087e-01	ci right 2.637254e-01	k: 18232	n:70000
Cons ci ratio: 1.031875e-01	ci left: 1.915667e-02	ci right 2.125479e-02	k: 1413	n:70000
KS ci ratio: 1.054384e-02	ci left: 6.603009e-01	ci right 6.673141e-01	k: 46467	n:70000
AMFR   70000 perm   16 sec   (4454 perm/sec)   p_kst 6.638143e-01   p_cons 2.018571e-02   p_joint 2.604571e-01

Joint ci ratio: 2.370858e-02	ci left: 2.516586e-01	ci right 2.577092e-01	k: 20374	n:80000
Cons ci ratio: 9.609916e-02	ci left: 1.939497e-02	ci right 2.136503e-02	k: 1629	n:80000
KS ci ratio: 9.859594e-03	ci left: 6.606772e-01	ci right 6.672359e-01	k: 53117	n:80000
AMFR   80000 perm   18 sec   (4383 perm/sec)   p_kst 6.639625e-01   p_cons 2.036250e-02   p_joint 2.546750e-01

Outputting figure to mutsig2_images.part000000000007/AMFR.3_1988_80000_0.66396_0.020362_0.25467.png
                gene_name: AMFR
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 68 percent done.
AMIGO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.837354e-02	ci left: 3.016359e-01	ci right 3.198745e-01	k: 3107	n:10000
Cons ci ratio: 2.975552e-02	ci left: 6.248728e-01	ci right 6.438489e-01	k: 6344	n:10000
KS ci ratio: 1.021285e-01	ci left: 1.218044e-01	ci right 1.350129e-01	k: 1283	n:10000
AMIGO1   10000 perm   2 sec   (5962 perm/sec)   p_kst 1.283000e-01   p_cons 6.344000e-01   p_joint 3.107000e-01

Joint ci ratio: 4.077128e-02	ci left: 3.096086e-01	ci right 3.225449e-01	k: 6321	n:20000
Cons ci ratio: 2.177072e-02	ci left: 6.116759e-01	ci right 6.251896e-01	k: 12369	n:20000
KS ci ratio: 7.286956e-02	ci left: 1.217750e-01	ci right 1.310339e-01	k: 2527	n:20000
AMIGO1   20000 perm   4 sec   (5271 perm/sec)   p_kst 1.263500e-01   p_cons 6.184500e-01   p_joint 3.160500e-01

Outputting figure to mutsig2_images.part000000000007/AMIGO1.3_1486_20000_0.12635_0.61845_0.31605.png
                gene_name: AMIGO1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 70 percent done.
AMPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.453391e-03	ci left: 9.703722e-01	ci right 9.767479e-01	k: 9737	n:10000
Cons ci ratio: 1.968030e-02	ci left: 7.907046e-01	ci right 8.065211e-01	k: 7987	n:10000
KS ci ratio: 2.319292e-02	ci left: 7.319911e-01	ci right 7.492685e-01	k: 7407	n:10000
AMPD3   10000 perm   2 sec   (5597 perm/sec)   p_kst 7.407000e-01   p_cons 7.987000e-01   p_joint 9.737000e-01

Outputting figure to mutsig2_images.part000000000007/AMPD3.3_2411_10000_0.7407_0.7987_0.9737.png
                gene_name: AMPD3
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 72 percent done.
ANAPC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.432872e-02	ci left: 5.561176e-01	ci right 5.756439e-01	k: 5659	n:10000
Cons ci ratio: 7.002437e-02	ci left: 2.301744e-01	ci right 2.469782e-01	k: 2385	n:10000
KS ci ratio: 2.210077e-02	ci left: 7.502904e-01	ci right 7.671586e-01	k: 7588	n:10000
ANAPC5   10000 perm   2 sec   (5183 perm/sec)   p_kst 7.588000e-01   p_cons 2.385000e-01   p_joint 5.659000e-01

Outputting figure to mutsig2_images.part000000000007/ANAPC5.3_2336_10000_0.7588_0.2385_0.5659.png
                gene_name: ANAPC5
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 74 percent done.
ANGPT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.232929e-01	ci left: 8.611301e-02	ci right 9.752607e-02	k: 917	n:10000
Cons ci ratio: 5.221033e-02	ci left: 3.509817e-01	ci right 3.698997e-01	k: 3604	n:10000
KS ci ratio: 1.606345e-01	ci left: 5.166964e-02	ci right 6.079103e-02	k: 561	n:10000
ANGPT4   10000 perm   2 sec   (5395 perm/sec)   p_kst 5.610000e-02   p_cons 3.604000e-01   p_joint 9.170000e-02

Joint ci ratio: 7.507870e-02	ci left: 1.154284e-01	ci right 1.244824e-01	k: 2398	n:20000
Cons ci ratio: 3.636814e-02	ci left: 3.607133e-01	ci right 3.741253e-01	k: 7348	n:20000
KS ci ratio: 1.133746e-01	ci left: 5.319383e-02	ci right 5.963589e-02	k: 1127	n:20000
ANGPT4   20000 perm   4 sec   (5126 perm/sec)   p_kst 5.635000e-02   p_cons 3.674000e-01   p_joint 1.199000e-01

Joint ci ratio: 7.356266e-02	ci left: 8.327703e-02	ci right 8.966998e-02	k: 2593	n:30000
Cons ci ratio: 2.997861e-02	ci left: 3.575554e-01	ci right 3.684711e-01	k: 10890	n:30000
KS ci ratio: 9.271595e-02	ci left: 5.362028e-02	ci right 5.886607e-02	k: 1686	n:30000
ANGPT4   30000 perm   6 sec   (5009 perm/sec)   p_kst 5.620000e-02   p_cons 3.630000e-01   p_joint 8.643333e-02

Outputting figure to mutsig2_images.part000000000007/ANGPT4.3_1548_30000_0.0562_0.363_0.086433.png
                gene_name: ANGPT4
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.090 

Current progress: 75 percent done.
ANKH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.215805e-02	ci left: 1.460943e-01	ci right 1.603084e-01	k: 1531	n:10000
Cons ci ratio: 1.031447e-01	ci left: 1.196532e-01	ci right 1.327654e-01	k: 1261	n:10000
KS ci ratio: 6.214964e-02	ci left: 2.756709e-01	ci right 2.934548e-01	k: 2845	n:10000
ANKH   10000 perm   2 sec   (5735 perm/sec)   p_kst 2.845000e-01   p_cons 1.261000e-01   p_joint 1.531000e-01

Joint ci ratio: 4.506823e-02	ci left: 2.682241e-01	ci right 2.806416e-01	k: 5488	n:20000
Cons ci ratio: 7.252515e-02	ci left: 1.228085e-01	ci right 1.321001e-01	k: 2548	n:20000
KS ci ratio: 4.406567e-02	ci left: 2.772109e-01	ci right 2.897521e-01	k: 5669	n:20000
ANKH   20000 perm   5 sec   (4226 perm/sec)   p_kst 2.834500e-01   p_cons 1.274000e-01   p_joint 2.744000e-01

Outputting figure to mutsig2_images.part000000000007/ANKH.3_1527_20000_0.28345_0.1274_0.2744.png
                gene_name: ANKH
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 77 percent done.
ANKK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.703135e-02	ci left: 6.684392e-01	ci right 6.868572e-01	k: 6777	n:10000
Cons ci ratio: 4.667687e-02	ci left: 4.038243e-01	ci right 4.232261e-01	k: 4135	n:10000
KS ci ratio: 4.299014e-02	ci left: 4.441065e-01	ci right 4.637203e-01	k: 4539	n:10000
ANKK1   10000 perm   2 sec   (5748 perm/sec)   p_kst 4.539000e-01   p_cons 4.135000e-01   p_joint 6.777000e-01

Outputting figure to mutsig2_images.part000000000007/ANKK1.3_2330_10000_0.4539_0.4135_0.6777.png
                gene_name: ANKK1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 79 percent done.
ANKRD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.851646e-02	ci left: 6.444822e-01	ci right 6.632281e-01	k: 6539	n:10000
KS ci ratio: 1.896174e-02	ci left: 8.025773e-01	ci right 8.180415e-01	k: 8104	n:10000
ANKRD10   10000 perm   2 sec   (5859 perm/sec)   p_kst 8.104000e-01   p_cons 6.539000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/ANKRD10.3_1287_10000_0.8104_0.6539_1.png
                gene_name: ANKRD10
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
ALS2CR12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.782673e-02	ci left: 6.555515e-01	ci right 6.741524e-01	k: 6649	n:10000
KS ci ratio: 4.704442e-02	ci left: 4.000388e-01	ci right 4.194138e-01	k: 4097	n:10000
ALS2CR12   10000 perm   2 sec   (6312 perm/sec)   p_kst 4.097000e-01   p_cons 6.649000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/ALS2CR12.2_1394_10000_0.4097_0.6649_1.png
                gene_name: ALS2CR12
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
AMAC1L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
Cons ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
KS ci ratio: 4.877944e-02	ci left: 3.827127e-01	ci right 4.019500e-01	k: 3923	n:10000
AMAC1L3   10000 perm   1 sec   (6947 perm/sec)   p_kst 3.923000e-01   p_cons 1.132000e-01   p_joint 1.789000e-01

Joint ci ratio: 6.714503e-02	ci left: 1.406893e-01	ci right 1.505140e-01	k: 2911	n:20000
Cons ci ratio: 7.828409e-02	ci left: 1.070221e-01	ci right 1.157912e-01	k: 2227	n:20000
KS ci ratio: 3.429393e-02	ci left: 3.883154e-01	ci right 4.019151e-01	k: 7902	n:20000
AMAC1L3   20000 perm   3 sec   (6139 perm/sec)   p_kst 3.951000e-01   p_cons 1.113500e-01   p_joint 1.455500e-01

Outputting figure to mutsig2_images.part000000000007/AMAC1L3.2_1025_20000_0.3951_0.11135_0.14555.png
                gene_name: AMAC1L3
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 84 percent done.
AMHR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.757738e-02	ci left: 6.595781e-01	ci right 6.781235e-01	k: 6689	n:10000
KS ci ratio: 3.229731e-02	ci left: 5.859043e-01	ci right 6.052400e-01	k: 5956	n:10000
AMHR2   10000 perm   2 sec   (5900 perm/sec)   p_kst 5.956000e-01   p_cons 6.689000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/AMHR2.2_1766_10000_0.5956_0.6689_1.png
                gene_name: AMHR2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
AMMECR1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.263640e-02	ci left: 4.481982e-01	ci right 4.678262e-01	k: 4580	n:10000
Cons ci ratio: 2.914273e-02	ci left: 6.345245e-01	ci right 6.533915e-01	k: 6440	n:10000
KS ci ratio: 6.635571e-02	ci left: 2.500393e-01	ci right 2.673015e-01	k: 2586	n:10000
AMMECR1L   10000 perm   2 sec   (5560 perm/sec)   p_kst 2.586000e-01   p_cons 6.440000e-01   p_joint 4.580000e-01

Outputting figure to mutsig2_images.part000000000007/AMMECR1L.2_957_10000_0.2586_0.644_0.458.png
                gene_name: AMMECR1L
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 88 percent done.
AMTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.182352e-02	ci left: 5.930304e-01	ci right 6.123098e-01	k: 6027	n:10000
Cons ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
KS ci ratio: 4.597208e-02	ci left: 4.111978e-01	ci right 4.306483e-01	k: 4209	n:10000
AMTN   10000 perm   1 sec   (7132 perm/sec)   p_kst 4.209000e-01   p_cons 1.131000e-01   p_joint 6.027000e-01

Joint ci ratio: 2.268752e-02	ci left: 5.919682e-01	ci right 6.056031e-01	k: 11976	n:20000
Cons ci ratio: 7.898397e-02	ci left: 1.053025e-01	ci right 1.140113e-01	k: 2192	n:20000
KS ci ratio: 3.257356e-02	ci left: 4.130969e-01	ci right 4.268264e-01	k: 8399	n:20000
AMTN   20000 perm   3 sec   (6265 perm/sec)   p_kst 4.199500e-01   p_cons 1.096000e-01   p_joint 5.988000e-01

Outputting figure to mutsig2_images.part000000000007/AMTN.2_662_20000_0.41995_0.1096_0.5988.png
                gene_name: AMTN
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 89 percent done.
ANAPC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.260160e-01	ci left: 2.589329e-02	ci right 3.258470e-02	k: 291	n:10000
Cons ci ratio: 1.977666e-01	ci left: 3.405205e-02	ci right 4.162024e-02	k: 377	n:10000
KS ci ratio: 7.156145e-02	ci left: 2.224724e-01	ci right 2.390847e-01	k: 2307	n:10000
ANAPC10   10000 perm   1 sec   (7223 perm/sec)   p_kst 2.307000e-01   p_cons 3.770000e-02   p_joint 2.910000e-02

Joint ci ratio: 1.913577e-01	ci left: 1.858107e-02	ci right 2.256002e-02	k: 410	n:20000
Cons ci ratio: 1.380522e-01	ci left: 3.606913e-02	ci right 4.146602e-02	k: 774	n:20000
KS ci ratio: 4.989285e-02	ci left: 2.299306e-01	ci right 2.417463e-01	k: 4716	n:20000
ANAPC10   20000 perm   3 sec   (6340 perm/sec)   p_kst 2.358000e-01   p_cons 3.870000e-02   p_joint 2.050000e-02

Joint ci ratio: 2.065198e-01	ci left: 1.064047e-02	ci right 1.312207e-02	k: 355	n:30000
Cons ci ratio: 1.122936e-01	ci left: 3.683738e-02	ci right 4.125246e-02	k: 1170	n:30000
KS ci ratio: 4.081485e-02	ci left: 2.303436e-01	ci right 2.399744e-01	k: 7054	n:30000
ANAPC10   30000 perm   5 sec   (6006 perm/sec)   p_kst 2.351333e-01   p_cons 3.900000e-02   p_joint 1.183333e-02

Joint ci ratio: 1.778438e-01	ci left: 1.093208e-02	ci right 1.308963e-02	k: 479	n:40000
Cons ci ratio: 9.617554e-02	ci left: 3.795406e-02	ci right 4.181310e-02	k: 1594	n:40000
KS ci ratio: 3.531893e-02	ci left: 2.312741e-01	ci right 2.396143e-01	k: 9417	n:40000
ANAPC10   40000 perm   7 sec   (5771 perm/sec)   p_kst 2.354250e-01   p_cons 3.985000e-02   p_joint 1.197500e-02

Joint ci ratio: 4.386557e-02	ci left: 1.346907e-01	ci right 1.407514e-01	k: 6885	n:50000
Cons ci ratio: 4.938712e-02	ci left: 1.091296e-01	ci right 1.146755e-01	k: 5594	n:50000
KS ci ratio: 3.164562e-02	ci left: 2.310901e-01	ci right 2.385407e-01	k: 11740	n:50000
ANAPC10   50000 perm   9 sec   (5381 perm/sec)   p_kst 2.348000e-01   p_cons 1.118800e-01   p_joint 1.377000e-01

Outputting figure to mutsig2_images.part000000000007/ANAPC10.2_574_50000_0.2348_0.11188_0.1377.png
                gene_name: ANAPC10
               theta_stop: 0.049 
                    nperm: 50000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 91 percent done.
ANGEL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.468960e-02	ci left: 1.393291e-01	ci right 1.532776e-01	k: 1462	n:10000
Cons ci ratio: 1.423778e-02	ci left: 8.770500e-01	ci right 8.897257e-01	k: 8835	n:10000
KS ci ratio: 3.842359e-01	ci left: 8.324320e-03	ci right 1.236857e-02	k: 102	n:10000
ANGEL1   10000 perm   2 sec   (4923 perm/sec)   p_kst 1.020000e-02   p_cons 8.835000e-01   p_joint 1.462000e-01

Joint ci ratio: 6.580183e-02	ci left: 1.457186e-01	ci right 1.556832e-01	k: 3013	n:20000
Cons ci ratio: 1.016160e-02	ci left: 8.769910e-01	ci right 8.859977e-01	k: 17631	n:20000
KS ci ratio: 2.779027e-01	ci left: 8.481394e-03	ci right 1.126389e-02	k: 196	n:20000
ANGEL1   20000 perm   4 sec   (4587 perm/sec)   p_kst 9.800000e-03   p_cons 8.815500e-01   p_joint 1.506500e-01

Joint ci ratio: 6.760792e-02	ci left: 9.734965e-02	ci right 1.041946e-01	k: 3022	n:30000
Cons ci ratio: 8.302566e-03	ci left: 8.776877e-01	ci right 8.850382e-01	k: 26442	n:30000
KS ci ratio: 2.200541e-01	ci left: 9.314470e-03	ci right 1.164846e-02	k: 313	n:30000
ANGEL1   30000 perm   7 sec   (4398 perm/sec)   p_kst 1.043333e-02   p_cons 8.814000e-01   p_joint 1.007333e-01

Joint ci ratio: 4.647484e-02	ci left: 1.474794e-01	ci right 1.545214e-01	k: 6039	n:40000
Cons ci ratio: 7.182366e-03	ci left: 8.784189e-01	ci right 8.847756e-01	k: 35265	n:40000
KS ci ratio: 1.875776e-01	ci left: 9.786385e-03	ci right 1.183556e-02	k: 431	n:40000
ANGEL1   40000 perm   9 sec   (4403 perm/sec)   p_kst 1.077500e-02   p_cons 8.816250e-01   p_joint 1.509750e-01

Joint ci ratio: 4.183966e-02	ci left: 1.462065e-01	ci right 1.524743e-01	k: 7466	n:50000
Cons ci ratio: 6.418032e-03	ci left: 8.789582e-01	ci right 8.846374e-01	k: 44091	n:50000
KS ci ratio: 1.669951e-01	ci left: 9.989194e-03	ci right 1.182825e-02	k: 544	n:50000
ANGEL1   50000 perm   11 sec   (4405 perm/sec)   p_kst 1.088000e-02   p_cons 8.818200e-01   p_joint 1.493200e-01

Joint ci ratio: 3.509382e-02	ci left: 1.691204e-01	ci right 1.751780e-01	k: 10328	n:60000
Cons ci ratio: 5.868251e-03	ci left: 8.788703e-01	ci right 8.840594e-01	k: 52889	n:60000
KS ci ratio: 1.522101e-01	ci left: 1.010061e-02	ci right 1.178053e-02	k: 655	n:60000
ANGEL1   60000 perm   14 sec   (4382 perm/sec)   p_kst 1.091667e-02   p_cons 8.814833e-01   p_joint 1.721333e-01

Joint ci ratio: 2.881256e-02	ci left: 2.061066e-01	ci right 2.121461e-01	k: 14638	n:70000
Cons ci ratio: 5.757055e-03	ci left: 8.663053e-01	ci right 8.713212e-01	k: 60818	n:70000
KS ci ratio: 1.398456e-01	ci left: 1.032325e-02	ci right 1.188910e-02	k: 776	n:70000
ANGEL1   70000 perm   16 sec   (4317 perm/sec)   p_kst 1.108571e-02   p_cons 8.688286e-01   p_joint 2.091143e-01

Joint ci ratio: 2.729583e-02	ci left: 2.021573e-01	ci right 2.077641e-01	k: 16396	n:80000
Cons ci ratio: 5.379392e-03	ci left: 8.667179e-01	ci right 8.714053e-01	k: 69526	n:80000
KS ci ratio: 1.310377e-01	ci left: 1.033714e-02	ci right 1.179865e-02	k: 884	n:80000
ANGEL1   80000 perm   19 sec   (4243 perm/sec)   p_kst 1.105000e-02   p_cons 8.690750e-01   p_joint 2.049500e-01

Joint ci ratio: 2.283712e-02	ci left: 2.438088e-01	ci right 2.494520e-01	k: 22196	n:90000
Cons ci ratio: 5.086017e-03	ci left: 8.662076e-01	ci right 8.706353e-01	k: 78159	n:90000
KS ci ratio: 1.230835e-01	ci left: 1.045807e-02	ci right 1.184038e-02	k: 1002	n:90000
ANGEL1   90000 perm   21 sec   (4219 perm/sec)   p_kst 1.113333e-02   p_cons 8.684333e-01   p_joint 2.466222e-01

Joint ci ratio: 2.278805e-02	ci left: 2.257313e-01	ci right 2.309445e-01	k: 22833	n:100000
Cons ci ratio: 4.821280e-03	ci left: 8.665005e-01	ci right 8.706981e-01	k: 86861	n:100000
KS ci ratio: 1.177567e-01	ci left: 1.031421e-02	ci right 1.161439e-02	k: 1095	n:100000
ANGEL1   100000 perm   24 sec   (4186 perm/sec)   p_kst 1.095000e-02   p_cons 8.686100e-01   p_joint 2.283300e-01

Joint ci ratio: 1.810590e-02	ci left: 2.960867e-01	ci right 3.015057e-01	k: 32867	n:110000
Cons ci ratio: 4.600216e-03	ci left: 8.664337e-01	ci right 8.704377e-01	k: 95529	n:110000
KS ci ratio: 1.120701e-01	ci left: 1.038316e-02	ci right 1.162464e-02	k: 1209	n:110000
ANGEL1   110000 perm   27 sec   (4146 perm/sec)   p_kst 1.099091e-02   p_cons 8.684455e-01   p_joint 2.987909e-01

Joint ci ratio: 1.734370e-02	ci left: 2.959948e-01	ci right 3.011816e-01	k: 35830	n:120000
Cons ci ratio: 4.399619e-03	ci left: 8.667677e-01	ci right 8.705978e-01	k: 104243	n:120000
KS ci ratio: 1.072579e-01	ci left: 1.041754e-02	ci right 1.160627e-02	k: 1320	n:120000
ANGEL1   120000 perm   29 sec   (4104 perm/sec)   p_kst 1.100000e-02   p_cons 8.686917e-01   p_joint 2.985833e-01

Joint ci ratio: 1.695517e-02	ci left: 2.888923e-01	ci right 2.938401e-01	k: 37877	n:130000
Cons ci ratio: 4.238110e-03	ci left: 8.662408e-01	ci right 8.699274e-01	k: 112852	n:130000
KS ci ratio: 1.027992e-01	ci left: 1.049257e-02	ci right 1.163709e-02	k: 1437	n:130000
ANGEL1   130000 perm   32 sec   (4057 perm/sec)   p_kst 1.105385e-02   p_cons 8.680923e-01   p_joint 2.913615e-01

Joint ci ratio: 1.633268e-02	ci left: 2.891274e-01	ci right 2.938956e-01	k: 40811	n:140000
Cons ci ratio: 4.085078e-03	ci left: 8.662444e-01	ci right 8.697974e-01	k: 121524	n:140000
KS ci ratio: 9.914448e-02	ci left: 1.049505e-02	ci right 1.159677e-02	k: 1545	n:140000
ANGEL1   140000 perm   35 sec   (4009 perm/sec)   p_kst 1.103571e-02   p_cons 8.680286e-01   p_joint 2.915071e-01

Outputting figure to mutsig2_images.part000000000007/ANGEL1.2_2053_140000_0.011036_0.86803_0.29151.png
                gene_name: ANGEL1
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.29 

Current progress: 93 percent done.
ANGPTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
Cons ci ratio: 1.027334e-02	ci left: 9.308177e-01	ci right 9.405266e-01	k: 9358	n:10000
KS ci ratio: 1.134190e-01	ci left: 1.006167e-01	ci right 1.128135e-01	k: 1066	n:10000
ANGPTL1   10000 perm   2 sec   (6317 perm/sec)   p_kst 1.066000e-01   p_cons 9.358000e-01   p_joint 2.945000e-01

Joint ci ratio: 4.911646e-02	ci left: 2.355813e-01	ci right 2.474939e-01	k: 4830	n:20000
Cons ci ratio: 7.426972e-03	ci left: 9.294977e-01	ci right 9.364757e-01	k: 18661	n:20000
KS ci ratio: 7.912587e-02	ci left: 1.049587e-01	ci right 1.136553e-01	k: 2185	n:20000
ANGPTL1   20000 perm   4 sec   (5595 perm/sec)   p_kst 1.092500e-01   p_cons 9.330500e-01   p_joint 2.415000e-01

Outputting figure to mutsig2_images.part000000000007/ANGPTL1.2_1492_20000_0.10925_0.93305_0.2415.png
                gene_name: ANGPTL1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 95 percent done.
ANGPTL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.313256e-02	ci left: 7.330016e-01	ci right 7.502574e-01	k: 7417	n:10000
KS ci ratio: 4.575590e-02	ci left: 4.134900e-01	ci right 4.329547e-01	k: 4232	n:10000
ANGPTL3   10000 perm   2 sec   (5957 perm/sec)   p_kst 4.232000e-01   p_cons 7.417000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000007/ANGPTL3.2_1411_10000_0.4232_0.7417_1.png
                gene_name: ANGPTL3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
ANKMY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.475807e-02	ci left: 8.692784e-01	ci right 8.823018e-01	k: 8759	n:10000
Cons ci ratio: 3.582708e-02	ci left: 5.349777e-01	ci right 5.545962e-01	k: 5448	n:10000
KS ci ratio: 4.593439e-02	ci left: 4.115964e-01	ci right 4.310494e-01	k: 4213	n:10000
ANKMY1   10000 perm   2 sec   (5637 perm/sec)   p_kst 4.213000e-01   p_cons 5.448000e-01   p_joint 8.759000e-01

Outputting figure to mutsig2_images.part000000000007/ANKMY1.2_3161_10000_0.4213_0.5448_0.8759.png
                gene_name: ANKMY1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 98 percent done.
ANKRA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.159391e-02	ci left: 1.476637e-01	ci right 1.619380e-01	k: 1547	n:10000
Cons ci ratio: 7.331842e-02	ci left: 2.140838e-01	ci right 2.304783e-01	k: 2222	n:10000
KS ci ratio: 1.651998e-01	ci left: 4.888186e-02	ci right 5.778061e-02	k: 532	n:10000
ANKRA2   10000 perm   2 sec   (5588 perm/sec)   p_kst 5.320000e-02   p_cons 2.222000e-01   p_joint 1.547000e-01

Joint ci ratio: 5.716596e-02	ci left: 1.848801e-01	ci right 1.958101e-01	k: 3806	n:20000
Cons ci ratio: 5.117161e-02	ci left: 2.210114e-01	ci right 2.326681e-01	k: 4536	n:20000
KS ci ratio: 1.161276e-01	ci left: 5.076176e-02	ci right 5.706873e-02	k: 1077	n:20000
ANKRA2   20000 perm   4 sec   (5400 perm/sec)   p_kst 5.385000e-02   p_cons 2.268000e-01   p_joint 1.903000e-01

Joint ci ratio: 4.613544e-02	ci left: 1.894724e-01	ci right 1.984536e-01	k: 5818	n:30000
Cons ci ratio: 4.183924e-02	ci left: 2.216081e-01	ci right 2.311116e-01	k: 6790	n:30000
KS ci ratio: 9.582486e-02	ci left: 5.029613e-02	ci right 5.539091e-02	k: 1584	n:30000
ANKRA2   30000 perm   6 sec   (5148 perm/sec)   p_kst 5.280000e-02   p_cons 2.263333e-01   p_joint 1.939333e-01

Outputting figure to mutsig2_images.part000000000007/ANKRA2.2_974_30000_0.0528_0.22633_0.19393.png
                gene_name: ANKRA2
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000007
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 7 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 9893812: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000008> was used as the working directory.
Started at Fri Oct  5 23:52:50 2012
Results reported at Sat Oct  6 00:06:00 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000008.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000008.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 8  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000008.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    769.55 sec.
    Max Memory :      3500 MB
    Max Swap   :      5888 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
8
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 8
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 8: processing genes 632 - 721
Calculating significance of each gene.
Using projection method.
632	ANKRD12	2.166571e-01
633	ANKRD13A	2.454564e-01
634	ANKRD13B	6.458650e-01
635	ANKRD13C	9.386728e-01
636	ANKRD13D	8.018609e-01
637	ANKRD16	2.696092e-01
638	ANKRD17	5.857822e-01
639	ANKRD2	6.205553e-01
640	ANKRD20A1	1
641	ANKRD20A4	9.304099e-01
642	ANKRD22	1
643	ANKRD23	1
644	ANKRD24	7.353164e-01
645	ANKRD26	9.172663e-01
646	ANKRD27	5.927393e-01
647	ANKRD28	9.647611e-01
648	ANKRD29	3.164100e-01
In gene ANKRD30A the following bins exceed PROBCAP:
    COAD-AA-A01Z	categ 6	N = 3880    n = 1	mu =   3.62e-07
649	ANKRD30A	3.834197e-01
650	ANKRD32	6.298819e-01
651	ANKRD33	3.771321e-01
652	ANKRD34A	9.843503e-01
653	ANKRD34B	4.745722e-01
654	ANKRD35	5.920350e-01
655	ANKRD36B	2.058727e-01
656	ANKRD37	1
657	ANKRD39	4.930615e-01
658	ANKRD40	1.108144e-01
659	ANKRD42	8.101918e-01
660	ANKRD44	2.660594e-01
661	ANKRD45	2.690527e-01
662	ANKRD46	5.509991e-01
663	ANKRD49	1.455218e-01
664	ANKRD5	2.240290e-01
665	ANKRD50	1.173783e-01
666	ANKRD52	8.204515e-01
667	ANKRD53	3.338939e-01
668	ANKRD54	1
669	ANKRD55	7.020778e-02
670	ANKRD56	7.881354e-01
671	ANKRD57	1
672	ANKRD6	1.822447e-01
673	ANKRD7	2.682109e-01
674	ANKS1A	9.443760e-01
675	ANKS1B	8.173893e-02
676	ANKS3	7.600216e-01
677	ANKS4B	1
678	ANKS6	8.106228e-01
679	ANKZF1	8.281930e-01
680	ANLN	4.926800e-01
681	ANO1	9.773586e-01
682	ANO10	8.051487e-01
683	ANO2	6.684659e-01
684	ANO3	2.913329e-01
685	ANO4	4.698217e-04
686	ANO5	2.755253e-01
687	ANO6	6.244932e-01
688	ANO7	9.712195e-01
689	ANO8	9.964372e-01
690	ANO9	1
691	ANP32A	6.000728e-01
692	ANP32B	1
693	ANP32C	7.642221e-02
694	ANP32D	4.113990e-02
695	ANP32E	1
696	ANPEP	1.914573e-01
697	ANTXR1	3.734049e-01
698	ANTXR2	3.634433e-01
699	ANUBL1	8.619259e-01
700	ANXA1	5.593756e-01
701	ANXA10	1.010026e-02
702	ANXA11	4.166494e-01
703	ANXA13	3.312511e-01
704	ANXA2	5.675504e-01
705	ANXA3	5.970445e-01
706	ANXA4	1.950041e-01
707	ANXA5	6.709527e-01
708	ANXA6	7.856546e-01
709	ANXA7	3.663506e-01
710	ANXA8L2	1
711	ANXA9	1
712	AOAH	9.278741e-01
713	AOC2	4.260152e-01
714	AOC3	6.397638e-01
715	AOX1	8.156924e-01
716	AP1AR	8.530176e-02
717	AP1B1	9.842854e-01
718	AP1G1	7.074824e-01
719	AP1G2	1.085196e-01
720	AP1M1	7.055075e-01
721	AP1M2	8.054411e-01
Done

Running MutSig 2:
Scatter job 8: processing genes 632 - 721
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ANKRD12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.410837e-02	ci left: 4.314365e-01	ci right 4.509978e-01	k: 4412	n:10000
Cons ci ratio: 7.331842e-02	ci left: 2.140838e-01	ci right 2.304783e-01	k: 2222	n:10000
KS ci ratio: 3.958796e-02	ci left: 4.851533e-01	ci right 5.048496e-01	k: 4950	n:10000
ANKRD12   10000 perm   4 sec   (2814 perm/sec)   p_kst 4.950000e-01   p_cons 2.222000e-01   p_joint 4.412000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD12.16_6237_10000_0.495_0.2222_0.4412.png
                gene_name: ANKRD12
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 2 percent done.
ANKRD17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
Cons ci ratio: 4.163696e-02	ci left: 4.599781e-01	ci right 4.796395e-01	k: 4698	n:10000
KS ci ratio: 3.093700e-01	ci left: 1.335536e-02	ci right 1.833248e-02	k: 157	n:10000
ANKRD17   10000 perm   3 sec   (3351 perm/sec)   p_kst 1.570000e-02   p_cons 4.698000e-01   p_joint 4.660000e-02

Joint ci ratio: 1.123751e-01	ci left: 5.411849e-02	ci right 6.061095e-02	k: 1146	n:20000
Cons ci ratio: 2.839833e-02	ci left: 4.808997e-01	ci right 4.948038e-01	k: 9757	n:20000
KS ci ratio: 2.180628e-01	ci left: 1.416473e-02	ci right 1.767805e-02	k: 317	n:20000
ANKRD17   20000 perm   6 sec   (3117 perm/sec)   p_kst 1.585000e-02   p_cons 4.878500e-01   p_joint 5.730000e-02

Joint ci ratio: 1.149234e-01	ci left: 3.518393e-02	ci right 3.950626e-02	k: 1119	n:30000
Cons ci ratio: 2.317305e-02	ci left: 4.824950e-01	ci right 4.938406e-01	k: 14645	n:30000
KS ci ratio: 1.761816e-01	ci left: 1.480177e-02	ci right 1.769301e-02	k: 486	n:30000
ANKRD17   30000 perm   10 sec   (2940 perm/sec)   p_kst 1.620000e-02   p_cons 4.881667e-01   p_joint 3.730000e-02

Joint ci ratio: 1.102704e-01	ci left: 2.893381e-02	ci right 3.233478e-02	k: 1224	n:40000
Cons ci ratio: 1.999223e-02	ci left: 4.851644e-01	ci right 4.949870e-01	k: 19603	n:40000
KS ci ratio: 1.503958e-01	ci left: 1.544281e-02	ci right 1.797805e-02	k: 667	n:40000
ANKRD17   40000 perm   14 sec   (2961 perm/sec)   p_kst 1.667500e-02   p_cons 4.900750e-01   p_joint 3.060000e-02

Joint ci ratio: 1.010456e-01	ci left: 2.774161e-02	ci right 3.071338e-02	k: 1460	n:50000
Cons ci ratio: 1.784010e-02	ci left: 4.868487e-01	ci right 4.956323e-01	k: 24562	n:50000
KS ci ratio: 1.351785e-01	ci left: 1.542088e-02	ci right 1.767575e-02	k: 826	n:50000
ANKRD17   50000 perm   17 sec   (2930 perm/sec)   p_kst 1.652000e-02   p_cons 4.912400e-01   p_joint 2.920000e-02

Joint ci ratio: 9.414499e-02	ci left: 2.675964e-02	ci right 2.941960e-02	k: 1684	n:60000
Cons ci ratio: 1.627027e-02	ci left: 4.877086e-01	ci right 4.957255e-01	k: 29503	n:60000
KS ci ratio: 1.255002e-01	ci left: 1.499499e-02	ci right 1.701889e-02	k: 959	n:60000
ANKRD17   60000 perm   21 sec   (2912 perm/sec)   p_kst 1.598333e-02   p_cons 4.917167e-01   p_joint 2.806667e-02

Joint ci ratio: 8.238575e-02	ci left: 3.003639e-02	ci right 3.263123e-02	k: 2192	n:70000
Cons ci ratio: 1.585049e-02	ci left: 4.625988e-01	ci right 4.700040e-01	k: 32641	n:70000
KS ci ratio: 1.168820e-01	ci left: 1.488919e-02	ci right 1.675126e-02	k: 1106	n:70000
ANKRD17   70000 perm   24 sec   (2861 perm/sec)   p_kst 1.580000e-02   p_cons 4.663000e-01   p_joint 3.131429e-02

Joint ci ratio: 7.607231e-02	ci left: 3.090157e-02	ci right 3.335751e-02	k: 2569	n:80000
Cons ci ratio: 1.485142e-02	ci left: 4.620136e-01	ci right 4.689389e-01	k: 37238	n:80000
KS ci ratio: 1.092080e-01	ci left: 1.498371e-02	ci right 1.672665e-02	k: 1267	n:80000
ANKRD17   80000 perm   28 sec   (2809 perm/sec)   p_kst 1.583750e-02   p_cons 4.654750e-01   p_joint 3.211250e-02

Joint ci ratio: 7.618199e-02	ci left: 2.748799e-02	ci right 2.967587e-02	k: 2571	n:90000
Cons ci ratio: 1.400013e-02	ci left: 4.622812e-01	ci right 4.688099e-01	k: 41899	n:90000
KS ci ratio: 1.031646e-01	ci left: 1.497372e-02	ci right 1.661326e-02	k: 1420	n:90000
ANKRD17   90000 perm   33 sec   (2760 perm/sec)   p_kst 1.577778e-02   p_cons 4.655444e-01   p_joint 2.856667e-02

Joint ci ratio: 7.602141e-02	ci left: 2.491449e-02	ci right 2.689314e-02	k: 2589	n:100000
Cons ci ratio: 1.330267e-02	ci left: 4.616648e-01	ci right 4.678573e-01	k: 46476	n:100000
KS ci ratio: 9.783564e-02	ci left: 1.502642e-02	ci right 1.658185e-02	k: 1579	n:100000
ANKRD17   100000 perm   37 sec   (2723 perm/sec)   p_kst 1.579000e-02   p_cons 4.647600e-01   p_joint 2.589000e-02

Outputting figure to mutsig2_images.part000000000008/ANKRD17.12_7948_100000_0.01579_0.46476_0.02589.png
                gene_name: ANKRD17
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 3 percent done.
ANKRD50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.143997e-02	ci left: 2.803261e-01	ci right 2.981968e-01	k: 2892	n:10000
Cons ci ratio: 8.176015e-02	ci left: 1.792031e-01	ci right 1.945798e-01	k: 1868	n:10000
KS ci ratio: 5.560388e-02	ci left: 3.226707e-01	ci right 3.412273e-01	k: 3319	n:10000
ANKRD50   10000 perm   2 sec   (4096 perm/sec)   p_kst 3.319000e-01   p_cons 1.868000e-01   p_joint 2.892000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD50.12_4302_10000_0.3319_0.1868_0.2892.png
                gene_name: ANKRD50
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 5 percent done.
ANKS1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.923811e-02	ci left: 6.330162e-01	ci right 6.519008e-01	k: 6425	n:10000
Cons ci ratio: 5.140488e-02	ci left: 3.581397e-01	ci right 3.771375e-01	k: 3676	n:10000
KS ci ratio: 3.806611e-02	ci left: 5.047513e-01	ci right 5.244402e-01	k: 5146	n:10000
ANKS1B   10000 perm   3 sec   (3627 perm/sec)   p_kst 5.146000e-01   p_cons 3.676000e-01   p_joint 6.425000e-01

Outputting figure to mutsig2_images.part000000000008/ANKS1B.12_4139_10000_0.5146_0.3676_0.6425.png
                gene_name: ANKS1B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 7 percent done.
ANO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.067731e-02	ci left: 9.258557e-01	ci right 9.358915e-01	k: 9310	n:10000
Cons ci ratio: 3.710988e-02	ci left: 5.174580e-01	ci right 5.371261e-01	k: 5273	n:10000
KS ci ratio: 3.045198e-02	ci left: 6.140194e-01	ci right 6.331085e-01	k: 6236	n:10000
ANO4   10000 perm   2 sec   (4382 perm/sec)   p_kst 6.236000e-01   p_cons 5.273000e-01   p_joint 9.310000e-01

Outputting figure to mutsig2_images.part000000000008/ANO4.12_2863_10000_0.6236_0.5273_0.931.png
                gene_name: ANO4
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 8 percent done.
ANKRD26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.940154e-01	ci left: 7.872887e-03	ci right 1.182054e-02	k: 97	n:10000
Cons ci ratio: 2.863014e-01	ci left: 1.576399e-02	ci right 2.112177e-02	k: 183	n:10000
KS ci ratio: 2.473410e-01	ci left: 2.146516e-02	ci right 2.761609e-02	k: 244	n:10000
ANKRD26   10000 perm   3 sec   (3335 perm/sec)   p_kst 2.440000e-02   p_cons 1.830000e-02   p_joint 9.700000e-03

Joint ci ratio: 3.597902e-01	ci left: 4.840441e-03	ci right 7.006997e-03	k: 117	n:20000
Cons ci ratio: 1.978447e-01	ci left: 1.734330e-02	ci right 2.119826e-02	k: 384	n:20000
KS ci ratio: 1.763823e-01	ci left: 2.197114e-02	ci right 2.626874e-02	k: 481	n:20000
ANKRD26   20000 perm   6 sec   (3108 perm/sec)   p_kst 2.405000e-02   p_cons 1.920000e-02   p_joint 5.850000e-03

Joint ci ratio: 3.430554e-01	ci left: 3.591244e-03	ci right 5.107218e-03	k: 129	n:30000
Cons ci ratio: 1.611854e-01	ci left: 1.777321e-02	ci right 2.092085e-02	k: 579	n:30000
KS ci ratio: 1.449437e-01	ci left: 2.207259e-02	ci right 2.555380e-02	k: 713	n:30000
ANKRD26   30000 perm   10 sec   (3104 perm/sec)   p_kst 2.376667e-02   p_cons 1.930000e-02   p_joint 4.300000e-03

Joint ci ratio: 1.789794e-01	ci left: 1.078871e-02	ci right 1.293303e-02	k: 473	n:40000
Cons ci ratio: 1.347274e-01	ci left: 1.932710e-02	ci right 2.214308e-02	k: 828	n:40000
KS ci ratio: 1.215308e-01	ci left: 2.380738e-02	ci right 2.691205e-02	k: 1013	n:40000
ANKRD26   40000 perm   13 sec   (3147 perm/sec)   p_kst 2.532500e-02   p_cons 2.070000e-02   p_joint 1.182500e-02

Joint ci ratio: 1.893362e-01	ci left: 7.694905e-03	ci right 9.322930e-03	k: 424	n:50000
Cons ci ratio: 1.190030e-01	ci left: 1.997464e-02	ci right 2.252137e-02	k: 1061	n:50000
KS ci ratio: 1.072975e-01	ci left: 2.460324e-02	ci right 2.741216e-02	k: 1299	n:50000
ANKRD26   50000 perm   16 sec   (3107 perm/sec)   p_kst 2.598000e-02   p_cons 2.122000e-02   p_joint 8.480000e-03

Joint ci ratio: 2.001874e-01	ci left: 5.714213e-03	ci right 7.000903e-03	k: 380	n:60000
Cons ci ratio: 1.083482e-01	ci left: 2.019203e-02	ci right 2.252125e-02	k: 1280	n:60000
KS ci ratio: 9.788456e-02	ci left: 2.475758e-02	ci right 2.732188e-02	k: 1561	n:60000
ANKRD26   60000 perm   20 sec   (3072 perm/sec)   p_kst 2.601667e-02   p_cons 2.133333e-02   p_joint 6.333333e-03

Joint ci ratio: 1.942207e-01	ci left: 5.223695e-03	ci right 6.360716e-03	k: 404	n:70000
Cons ci ratio: 1.004657e-01	ci left: 2.021529e-02	ci right 2.236751e-02	k: 1489	n:70000
KS ci ratio: 9.112108e-02	ci left: 2.458223e-02	ci right 2.694302e-02	k: 1802	n:70000
ANKRD26   70000 perm   23 sec   (3024 perm/sec)   p_kst 2.574286e-02   p_cons 2.127143e-02   p_joint 5.771429e-03

Joint ci ratio: 2.274221e-01	ci left: 3.279318e-03	ci right 4.132296e-03	k: 295	n:80000
Cons ci ratio: 9.658417e-02	ci left: 1.919969e-02	ci right 2.116032e-02	k: 1613	n:80000
KS ci ratio: 8.548273e-02	ci left: 2.451654e-02	ci right 2.671805e-02	k: 2048	n:80000
ANKRD26   80000 perm   27 sec   (3008 perm/sec)   p_kst 2.560000e-02   p_cons 2.016250e-02   p_joint 3.687500e-03

Joint ci ratio: 2.053302e-01	ci left: 3.619213e-03	ci right 4.457696e-03	k: 362	n:90000
Cons ci ratio: 9.049623e-02	ci left: 1.949723e-02	ci right 2.135608e-02	k: 1837	n:90000
KS ci ratio: 8.050662e-02	ci left: 2.463237e-02	ci right 2.670946e-02	k: 2309	n:90000
ANKRD26   90000 perm   31 sec   (2921 perm/sec)   p_kst 2.565556e-02   p_cons 2.041111e-02   p_joint 4.022222e-03

Joint ci ratio: 2.068062e-01	ci left: 3.209800e-03	ci right 3.959448e-03	k: 357	n:100000
Cons ci ratio: 8.607247e-02	ci left: 1.944466e-02	ci right 2.120332e-02	k: 2031	n:100000
KS ci ratio: 7.673921e-02	ci left: 2.445324e-02	ci right 2.641441e-02	k: 2542	n:100000
ANKRD26   100000 perm   34 sec   (2904 perm/sec)   p_kst 2.542000e-02   p_cons 2.031000e-02   p_joint 3.570000e-03

Joint ci ratio: 2.068401e-01	ci left: 2.917953e-03	ci right 3.599562e-03	k: 357	n:110000
Cons ci ratio: 8.205193e-02	ci left: 1.949255e-02	ci right 2.116924e-02	k: 2235	n:110000
KS ci ratio: 7.305152e-02	ci left: 2.457642e-02	ci right 2.644871e-02	k: 2805	n:110000
ANKRD26   110000 perm   38 sec   (2866 perm/sec)   p_kst 2.550000e-02   p_cons 2.031818e-02   p_joint 3.245455e-03

Joint ci ratio: 1.435589e-01	ci left: 5.731533e-03	ci right 6.625917e-03	k: 740	n:120000
Cons ci ratio: 7.830149e-02	ci left: 1.965665e-02	ci right 2.126664e-02	k: 2454	n:120000
KS ci ratio: 7.004834e-02	ci left: 2.454169e-02	ci right 2.633134e-02	k: 3051	n:120000
ANKRD26   120000 perm   43 sec   (2819 perm/sec)   p_kst 2.542500e-02   p_cons 2.045000e-02   p_joint 6.166667e-03

Joint ci ratio: 1.384267e-01	ci left: 5.706217e-03	ci right 6.562191e-03	k: 796	n:130000
Cons ci ratio: 7.493655e-02	ci left: 1.984228e-02	ci right 2.139459e-02	k: 2679	n:130000
KS ci ratio: 6.726203e-02	ci left: 2.460444e-02	ci right 2.632451e-02	k: 3309	n:130000
ANKRD26   130000 perm   46 sec   (2799 perm/sec)   p_kst 2.545385e-02   p_cons 2.060769e-02   p_joint 6.123077e-03

Joint ci ratio: 1.130072e-01	ci left: 8.039631e-03	ci right 9.009461e-03	k: 1192	n:140000
Cons ci ratio: 7.051019e-02	ci left: 2.083783e-02	ci right 2.236779e-02	k: 3023	n:140000
KS ci ratio: 6.470009e-02	ci left: 2.472270e-02	ci right 2.638274e-02	k: 3576	n:140000
ANKRD26   140000 perm   51 sec   (2741 perm/sec)   p_kst 2.554286e-02   p_cons 2.159286e-02   p_joint 8.514286e-03

Joint ci ratio: 1.126594e-01	ci left: 7.555377e-03	ci right 8.463795e-03	k: 1200	n:150000
Cons ci ratio: 6.782042e-02	ci left: 2.104725e-02	ci right 2.253131e-02	k: 3267	n:150000
KS ci ratio: 6.240189e-02	ci left: 2.483284e-02	ci right 2.643890e-02	k: 3844	n:150000
ANKRD26   150000 perm   55 sec   (2723 perm/sec)   p_kst 2.562667e-02   p_cons 2.178000e-02   p_joint 8.000000e-03

Joint ci ratio: 1.102181e-01	ci left: 7.411228e-03	ci right 8.281748e-03	k: 1254	n:160000
Cons ci ratio: 6.583954e-02	ci left: 2.096088e-02	ci right 2.239403e-02	k: 3467	n:160000
KS ci ratio: 6.058228e-02	ci left: 2.472691e-02	ci right 2.627785e-02	k: 4079	n:160000
ANKRD26   160000 perm   59 sec   (2708 perm/sec)   p_kst 2.549375e-02   p_cons 2.166875e-02   p_joint 7.837500e-03

Joint ci ratio: 1.001283e-01	ci left: 8.487675e-03	ci right 9.388015e-03	k: 1518	n:170000
Cons ci ratio: 6.379195e-02	ci left: 2.103577e-02	ci right 2.242766e-02	k: 3693	n:170000
KS ci ratio: 5.899729e-02	ci left: 2.456448e-02	ci right 2.606353e-02	k: 4302	n:170000
ANKRD26   170000 perm   64 sec   (2675 perm/sec)   p_kst 2.530588e-02   p_cons 2.172353e-02   p_joint 8.929412e-03

Joint ci ratio: 1.009269e-01	ci left: 7.891450e-03	ci right 8.735612e-03	k: 1495	n:180000
Cons ci ratio: 6.203758e-02	ci left: 2.102637e-02	ci right 2.237799e-02	k: 3905	n:180000
KS ci ratio: 5.731647e-02	ci left: 2.460134e-02	ci right 2.605845e-02	k: 4558	n:180000
ANKRD26   180000 perm   69 sec   (2599 perm/sec)   p_kst 2.532222e-02   p_cons 2.169444e-02   p_joint 8.305556e-03

Joint ci ratio: 9.893588e-02	ci left: 7.789118e-03	ci right 8.604941e-03	k: 1556	n:190000
Cons ci ratio: 6.055583e-02	ci left: 2.092508e-02	ci right 2.223694e-02	k: 4099	n:190000
KS ci ratio: 5.581322e-02	ci left: 2.459852e-02	ci right 2.601602e-02	k: 4807	n:190000
ANKRD26   190000 perm   77 sec   (2483 perm/sec)   p_kst 2.530000e-02   p_cons 2.157368e-02   p_joint 8.189474e-03

Outputting figure to mutsig2_images.part000000000008/ANKRD26.11_5269_190000_0.0253_0.021574_0.0081895.png
                gene_name: ANKRD26
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.0082 
     ci_joint_bounds_left: 0.0078 
    ci_joint_bounds_right: 0.0086 

Current progress: 10 percent done.
AP1G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.752760e-02	ci left: 6.603835e-01	ci right 6.789176e-01	k: 6697	n:10000
Cons ci ratio: 1.691880e-02	ci left: 8.357199e-01	ci right 8.500797e-01	k: 8430	n:10000
KS ci ratio: 4.489509e-02	ci left: 4.227607e-01	ci right 4.422786e-01	k: 4325	n:10000
AP1G2   10000 perm   2 sec   (4225 perm/sec)   p_kst 4.325000e-01   p_cons 8.430000e-01   p_joint 6.697000e-01

Outputting figure to mutsig2_images.part000000000008/AP1G2.10_2442_10000_0.4325_0.843_0.6697.png
                gene_name: AP1G2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 12 percent done.
ANKRD35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.872080e-01	ci left: 3.805695e-02	ci right 4.601263e-02	k: 419	n:10000
Cons ci ratio: 8.814885e-02	ci left: 1.577733e-01	ci right 1.724223e-01	k: 1650	n:10000
KS ci ratio: 1.703240e-01	ci left: 4.600180e-02	ci right 5.466254e-02	k: 502	n:10000
ANKRD35   10000 perm   2 sec   (4525 perm/sec)   p_kst 5.020000e-02   p_cons 1.650000e-01   p_joint 4.190000e-02

Joint ci ratio: 1.495754e-01	ci left: 3.071190e-02	ci right 3.572501e-02	k: 663	n:20000
Cons ci ratio: 6.580183e-02	ci left: 1.457186e-01	ci right 1.556832e-01	k: 3013	n:20000
KS ci ratio: 1.224394e-01	ci left: 4.575777e-02	ci right 5.177429e-02	k: 974	n:20000
ANKRD35   20000 perm   5 sec   (4284 perm/sec)   p_kst 4.870000e-02   p_cons 1.506500e-01   p_joint 3.315000e-02

Joint ci ratio: 1.561795e-01	ci left: 1.895846e-02	ci right 2.220199e-02	k: 616	n:30000
Cons ci ratio: 5.225854e-02	ci left: 1.537903e-01	ci right 1.620761e-01	k: 4737	n:30000
KS ci ratio: 1.003877e-01	ci left: 4.593359e-02	ci right 5.082101e-02	k: 1450	n:30000
ANKRD35   30000 perm   7 sec   (4185 perm/sec)   p_kst 4.833333e-02   p_cons 1.579000e-01   p_joint 2.053333e-02

Joint ci ratio: 1.300767e-01	ci left: 2.075422e-02	ci right 2.366572e-02	k: 887	n:40000
Cons ci ratio: 4.507670e-02	ci left: 1.554040e-01	ci right 1.625956e-01	k: 6359	n:40000
KS ci ratio: 8.823229e-02	ci left: 4.494643e-02	ci right 4.911965e-02	k: 1880	n:40000
ANKRD35   40000 perm   10 sec   (4143 perm/sec)   p_kst 4.700000e-02   p_cons 1.589750e-01   p_joint 2.217500e-02

Joint ci ratio: 9.920698e-02	ci left: 2.877582e-02	ci right 3.179904e-02	k: 1513	n:50000
Cons ci ratio: 4.031789e-02	ci left: 1.557848e-01	ci right 1.622148e-01	k: 7949	n:50000
KS ci ratio: 7.864154e-02	ci left: 4.547527e-02	ci right 4.921751e-02	k: 2366	n:50000
ANKRD35   50000 perm   12 sec   (4103 perm/sec)   p_kst 4.732000e-02   p_cons 1.589800e-01   p_joint 3.026000e-02

Outputting figure to mutsig2_images.part000000000008/ANKRD35.8_3058_50000_0.04732_0.15898_0.03026.png
                gene_name: ANKRD35
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 13 percent done.
ANO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.200305e-02	ci left: 1.783175e-01	ci right 1.936658e-01	k: 1859	n:10000
Cons ci ratio: 5.406084e-02	ci left: 3.351826e-01	ci right 3.539081e-01	k: 3445	n:10000
KS ci ratio: 1.074776e-01	ci left: 1.110554e-01	ci right 1.237684e-01	k: 1173	n:10000
ANO3   10000 perm   2 sec   (4340 perm/sec)   p_kst 1.173000e-01   p_cons 3.445000e-01   p_joint 1.859000e-01

Joint ci ratio: 6.596943e-02	ci left: 1.450775e-01	ci right 1.550245e-01	k: 3000	n:20000
Cons ci ratio: 3.819291e-02	ci left: 3.383600e-01	ci right 3.515851e-01	k: 6899	n:20000
KS ci ratio: 7.559884e-02	ci left: 1.140023e-01	ci right 1.230090e-01	k: 2369	n:20000
ANO3   20000 perm   5 sec   (4206 perm/sec)   p_kst 1.184500e-01   p_cons 3.449500e-01   p_joint 1.500000e-01

Outputting figure to mutsig2_images.part000000000008/ANO3.8_3054_20000_0.11845_0.34495_0.15.png
                gene_name: ANO3
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 15 percent done.
ANO5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.822979e-03	ci left: 9.754639e-01	ci right 9.812528e-01	k: 9785	n:10000
KS ci ratio: 1.401569e-02	ci left: 8.803248e-01	ci right 8.928490e-01	k: 8867	n:10000
ANO5   10000 perm   3 sec   (3407 perm/sec)   p_kst 8.867000e-01   p_cons 9.785000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANO5.8_2830_10000_0.8867_0.9785_1.png
                gene_name: ANO5
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
ANPEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.508261e-02	ci left: 2.574577e-01	ci right 2.748787e-01	k: 2661	n:10000
Cons ci ratio: 8.827696e-02	ci left: 1.573805e-01	ci right 1.720154e-01	k: 1646	n:10000
KS ci ratio: 7.866854e-02	ci left: 1.910164e-01	ci right 2.067594e-01	k: 1988	n:10000
ANPEP   10000 perm   2 sec   (4722 perm/sec)   p_kst 1.988000e-01   p_cons 1.646000e-01   p_joint 2.661000e-01

Outputting figure to mutsig2_images.part000000000008/ANPEP.8_2984_10000_0.1988_0.1646_0.2661.png
                gene_name: ANPEP
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 18 percent done.
AOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.809304e-02	ci left: 8.167986e-01	ci right 8.318120e-01	k: 8244	n:10000
Cons ci ratio: 2.137588e-02	ci left: 7.624337e-01	ci right 7.790083e-01	k: 7708	n:10000
KS ci ratio: 3.764925e-02	ci left: 5.102534e-01	ci right 5.299348e-01	k: 5201	n:10000
AOX1   10000 perm   2 sec   (4260 perm/sec)   p_kst 5.201000e-01   p_cons 7.708000e-01   p_joint 8.244000e-01

Outputting figure to mutsig2_images.part000000000008/AOX1.8_4157_10000_0.5201_0.7708_0.8244.png
                gene_name: AOX1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 20 percent done.
ANKRD30A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.377898e-02	ci left: 4.351271e-01	ci right 4.547050e-01	k: 4449	n:10000
Cons ci ratio: 1.738916e-02	ci left: 8.281881e-01	ci right 8.428159e-01	k: 8356	n:10000
KS ci ratio: 6.824099e-02	ci left: 2.395602e-01	ci right 2.565868e-01	k: 2480	n:10000
ANKRD30A   10000 perm   3 sec   (3301 perm/sec)   p_kst 2.480000e-01   p_cons 8.356000e-01   p_joint 4.449000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD30A.7_4166_10000_0.248_0.8356_0.4449.png
                gene_name: ANKRD30A
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 22 percent done.
ANKRD44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.416588e-02	ci left: 7.157300e-01	ci right 7.333390e-01	k: 7246	n:10000
Cons ci ratio: 5.649311e-02	ci left: 3.157228e-01	ci right 3.341792e-01	k: 3249	n:10000
KS ci ratio: 4.399229e-02	ci left: 4.327331e-01	ci right 4.523004e-01	k: 4425	n:10000
ANKRD44   10000 perm   2 sec   (5289 perm/sec)   p_kst 4.425000e-01   p_cons 3.249000e-01   p_joint 7.246000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD44.7_2860_10000_0.4425_0.3249_0.7246.png
                gene_name: ANKRD44
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 23 percent done.
ANKRD55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.900308e-02	ci left: 6.367370e-01	ci right 6.555778e-01	k: 6462	n:10000
Cons ci ratio: 2.504549e-02	ci left: 7.010970e-01	ci right 7.189804e-01	k: 7101	n:10000
KS ci ratio: 5.397717e-02	ci left: 3.358779e-01	ci right 3.546124e-01	k: 3452	n:10000
ANKRD55   10000 perm   3 sec   (3764 perm/sec)   p_kst 3.452000e-01   p_cons 7.101000e-01   p_joint 6.462000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD55.7_1889_10000_0.3452_0.7101_0.6462.png
                gene_name: ANKRD55
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 25 percent done.
ANLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.821609e-02	ci left: 1.306108e-01	ci right 1.442011e-01	k: 1373	n:10000
Cons ci ratio: 2.366646e-01	ci left: 2.353468e-02	ci right 2.994503e-02	k: 266	n:10000
KS ci ratio: 1.775478e-02	ci left: 8.222885e-01	ci right 8.371189e-01	k: 8298	n:10000
ANLN   10000 perm   2 sec   (4497 perm/sec)   p_kst 8.298000e-01   p_cons 2.660000e-02   p_joint 1.373000e-01

Joint ci ratio: 7.421998e-02	ci left: 1.178387e-01	ci right 1.269714e-01	k: 2447	n:20000
Cons ci ratio: 1.630116e-01	ci left: 2.580547e-02	ci right 3.043309e-02	k: 561	n:20000
KS ci ratio: 1.306629e-02	ci left: 8.127837e-01	ci right 8.235236e-01	k: 16364	n:20000
ANLN   20000 perm   5 sec   (4012 perm/sec)   p_kst 8.182000e-01   p_cons 2.805000e-02   p_joint 1.223500e-01

Joint ci ratio: 5.280219e-02	ci left: 1.510865e-01	ci right 1.593138e-01	k: 4655	n:30000
Cons ci ratio: 1.281768e-01	ci left: 2.829237e-02	ci right 3.219931e-02	k: 906	n:30000
KS ci ratio: 1.061704e-02	ci left: 8.152349e-01	ci right 8.239698e-01	k: 24589	n:30000
ANLN   30000 perm   8 sec   (3764 perm/sec)   p_kst 8.196333e-01   p_cons 3.020000e-02   p_joint 1.551667e-01

Joint ci ratio: 4.536113e-02	ci left: 1.537445e-01	ci right 1.609053e-01	k: 6292	n:40000
Cons ci ratio: 1.101776e-01	ci left: 2.898247e-02	ci right 3.238611e-02	k: 1226	n:40000
KS ci ratio: 9.175393e-03	ci left: 8.164514e-01	ci right 8.240021e-01	k: 32810	n:40000
ANLN   40000 perm   11 sec   (3704 perm/sec)   p_kst 8.202500e-01   p_cons 3.065000e-02   p_joint 1.573000e-01

Joint ci ratio: 4.617510e-02	ci left: 1.230634e-01	ci right 1.289001e-01	k: 6298	n:50000
Cons ci ratio: 1.035932e-01	ci left: 2.639596e-02	ci right 2.929920e-02	k: 1391	n:50000
KS ci ratio: 8.241458e-03	ci left: 8.155967e-01	ci right 8.223662e-01	k: 40950	n:50000
ANLN   50000 perm   14 sec   (3643 perm/sec)   p_kst 8.190000e-01   p_cons 2.782000e-02   p_joint 1.259600e-01

Joint ci ratio: 4.297489e-02	ci left: 1.191600e-01	ci right 1.244099e-01	k: 7306	n:60000
Cons ci ratio: 9.403022e-02	ci left: 2.682478e-02	ci right 2.948779e-02	k: 1688	n:60000
KS ci ratio: 7.519142e-03	ci left: 8.160633e-01	ci right 8.222391e-01	k: 49150	n:60000
ANLN   60000 perm   17 sec   (3611 perm/sec)   p_kst 8.191667e-01   p_cons 2.813333e-02   p_joint 1.217667e-01

Outputting figure to mutsig2_images.part000000000008/ANLN.7_3471_60000_0.81917_0.028133_0.12177.png
                gene_name: ANLN
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 27 percent done.
ANO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.829190e-02	ci left: 3.022309e-01	ci right 3.204791e-01	k: 3113	n:10000
Cons ci ratio: 1.090088e-01	ci left: 1.082244e-01	ci right 1.208011e-01	k: 1144	n:10000
KS ci ratio: 4.545732e-02	ci left: 4.166796e-01	ci right 4.361633e-01	k: 4264	n:10000
ANO2   10000 perm   2 sec   (4399 perm/sec)   p_kst 4.264000e-01   p_cons 1.144000e-01   p_joint 3.113000e-01

Joint ci ratio: 4.122831e-02	ci left: 3.048360e-01	ci right 3.177189e-01	k: 6225	n:20000
Cons ci ratio: 7.358769e-02	ci left: 1.196590e-01	ci right 1.288505e-01	k: 2484	n:20000
KS ci ratio: 3.233075e-02	ci left: 4.167384e-01	ci right 4.304838e-01	k: 8472	n:20000
ANO2   20000 perm   5 sec   (3987 perm/sec)   p_kst 4.236000e-01   p_cons 1.242000e-01   p_joint 3.112500e-01

Outputting figure to mutsig2_images.part000000000008/ANO2.7_3101_20000_0.4236_0.1242_0.31125.png
                gene_name: ANO2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 28 percent done.
ANKRD13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.901577e-02	ci left: 6.365358e-01	ci right 6.553791e-01	k: 6460	n:10000
KS ci ratio: 1.147777e-02	ci left: 9.156427e-01	ci right 9.263105e-01	k: 9211	n:10000
ANKRD13A   10000 perm   3 sec   (3035 perm/sec)   p_kst 9.211000e-01   p_cons 6.460000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANKRD13A.6_1833_10000_0.9211_0.646_1.png
                gene_name: ANKRD13A
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
ANKRD27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.643716e-02	ci left: 4.063151e-01	ci right 4.257338e-01	k: 4160	n:10000
Cons ci ratio: 9.028637e-02	ci left: 1.513922e-01	ci right 1.658072e-01	k: 1585	n:10000
KS ci ratio: 6.927536e-03	ci left: 9.662559e-01	ci right 9.730668e-01	k: 9698	n:10000
ANKRD27   10000 perm   3 sec   (3316 perm/sec)   p_kst 9.698000e-01   p_cons 1.585000e-01   p_joint 4.160000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD27.6_3265_10000_0.9698_0.1585_0.416.png
                gene_name: ANKRD27
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 32 percent done.
ANKRD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.424362e-02	ci left: 2.625040e-01	ci right 2.800294e-01	k: 2712	n:10000
Cons ci ratio: 1.019464e-01	ci left: 1.221955e-01	ci right 1.354215e-01	k: 1287	n:10000
KS ci ratio: 4.006591e-02	ci left: 4.791570e-01	ci right 4.988495e-01	k: 4890	n:10000
ANKRD5   10000 perm   2 sec   (4269 perm/sec)   p_kst 4.890000e-01   p_cons 1.287000e-01   p_joint 2.712000e-01

Joint ci ratio: 3.898782e-02	ci left: 3.291546e-01	ci right 3.422932e-01	k: 6714	n:20000
Cons ci ratio: 7.151575e-02	ci left: 1.259097e-01	ci right 1.352980e-01	k: 2611	n:20000
KS ci ratio: 2.885392e-02	ci left: 4.729544e-01	ci right 4.868514e-01	k: 9598	n:20000
ANKRD5   20000 perm   5 sec   (3952 perm/sec)   p_kst 4.799000e-01   p_cons 1.305500e-01   p_joint 3.357000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD5.6_2367_20000_0.4799_0.13055_0.3357.png
                gene_name: ANKRD5
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 33 percent done.
ANKRD52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.374371e-02	ci left: 2.655721e-01	ci right 2.831595e-01	k: 2743	n:10000
Cons ci ratio: 1.481229e-02	ci left: 8.684609e-01	ci right 8.815198e-01	k: 8751	n:10000
KS ci ratio: 1.010034e-01	ci left: 1.242496e-01	ci right 1.375662e-01	k: 1308	n:10000
ANKRD52   10000 perm   2 sec   (4172 perm/sec)   p_kst 1.308000e-01   p_cons 8.751000e-01   p_joint 2.743000e-01

Joint ci ratio: 4.618615e-02	ci left: 2.586449e-01	ci right 2.709235e-01	k: 5295	n:20000
Cons ci ratio: 1.058273e-02	ci left: 8.681030e-01	ci right 8.773884e-01	k: 17456	n:20000
KS ci ratio: 7.176879e-02	ci left: 1.251220e-01	ci right 1.344859e-01	k: 2595	n:20000
ANKRD52   20000 perm   5 sec   (3814 perm/sec)   p_kst 1.297500e-01   p_cons 8.728000e-01   p_joint 2.647500e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD52.6_3343_20000_0.12975_0.8728_0.26475.png
                gene_name: ANKRD52
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 35 percent done.
ANKRD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.460821e-02	ci left: 7.083616e-01	ci right 7.261116e-01	k: 7173	n:10000
KS ci ratio: 2.841575e-02	ci left: 6.460919e-01	ci right 6.648174e-01	k: 6555	n:10000
ANKRD6   10000 perm   2 sec   (4993 perm/sec)   p_kst 6.555000e-01   p_cons 7.173000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANKRD6.5_2229_10000_0.6555_0.7173_1.png
                gene_name: ANKRD6
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
ANO6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.682062e-02	ci left: 5.213614e-01	ci right 5.410204e-01	k: 5312	n:10000
Cons ci ratio: 1.268250e-02	ci left: 8.993926e-01	ci right 9.109701e-01	k: 9053	n:10000
KS ci ratio: 4.443180e-02	ci left: 4.278462e-01	ci right 4.473902e-01	k: 4376	n:10000
ANO6   10000 perm   3 sec   (3414 perm/sec)   p_kst 4.376000e-01   p_cons 9.053000e-01   p_joint 5.312000e-01

Outputting figure to mutsig2_images.part000000000008/ANO6.5_3101_10000_0.4376_0.9053_0.5312.png
                gene_name: ANO6
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 38 percent done.
ANKRD24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.832994e-02	ci left: 8.129369e-01	ci right 8.280759e-01	k: 8206	n:10000
Cons ci ratio: 1.323674e-02	ci left: 8.915942e-01	ci right 9.035731e-01	k: 8977	n:10000
KS ci ratio: 3.513917e-02	ci left: 5.445937e-01	ci right 5.641746e-01	k: 5544	n:10000
ANKRD24   10000 perm   3 sec   (3448 perm/sec)   p_kst 5.544000e-01   p_cons 8.977000e-01   p_joint 8.206000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD24.4_3525_10000_0.5544_0.8977_0.8206.png
                gene_name: ANKRD24
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 40 percent done.
ANKRD36B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.909288e-02	ci left: 2.350148e-01	ci right 2.519349e-01	k: 2434	n:10000
Cons ci ratio: 2.343441e-02	ci left: 7.279497e-01	ci right 7.453122e-01	k: 7367	n:10000
KS ci ratio: 1.192588e-01	ci left: 9.165653e-02	ci right 1.033791e-01	k: 974	n:10000
ANKRD36B   10000 perm   2 sec   (4460 perm/sec)   p_kst 9.740000e-02   p_cons 7.367000e-01   p_joint 2.434000e-01

Joint ci ratio: 4.437134e-02	ci left: 2.744301e-01	ci right 2.869337e-01	k: 5613	n:20000
Cons ci ratio: 1.565115e-02	ci left: 7.522541e-01	ci right 7.641708e-01	k: 15165	n:20000
KS ci ratio: 8.260454e-02	ci left: 9.700431e-02	ci right 1.054120e-01	k: 2023	n:20000
ANKRD36B   20000 perm   5 sec   (4203 perm/sec)   p_kst 1.011500e-01   p_cons 7.582500e-01   p_joint 2.806500e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD36B.4_4234_20000_0.10115_0.75825_0.28065.png
                gene_name: ANKRD36B
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 42 percent done.
ANKS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.183862e-01	ci left: 9.292171e-02	ci right 1.047132e-01	k: 987	n:10000
Cons ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
KS ci ratio: 2.589946e-02	ci left: 6.869792e-01	ci right 7.051065e-01	k: 6961	n:10000
ANKS6   10000 perm   2 sec   (4860 perm/sec)   p_kst 6.961000e-01   p_cons 1.240000e-02   p_joint 9.870000e-02

Joint ci ratio: 9.268048e-02	ci left: 7.828247e-02	ci right 8.593954e-02	k: 1641	n:20000
Cons ci ratio: 2.360574e-01	ci left: 1.199373e-02	ci right 1.524994e-02	k: 271	n:20000
KS ci ratio: 1.811318e-02	ci left: 6.943497e-01	ci right 7.070919e-01	k: 14015	n:20000
ANKS6   20000 perm   5 sec   (4343 perm/sec)   p_kst 7.007500e-01   p_cons 1.355000e-02   p_joint 8.205000e-02

Joint ci ratio: 7.515970e-02	ci left: 8.000026e-02	ci right 8.628075e-02	k: 2493	n:30000
Cons ci ratio: 1.937065e-01	ci left: 1.216125e-02	ci right 1.480087e-02	k: 403	n:30000
KS ci ratio: 1.490535e-02	ci left: 6.922331e-01	ci right 7.026620e-01	k: 20924	n:30000
ANKS6   30000 perm   7 sec   (4053 perm/sec)   p_kst 6.974667e-01   p_cons 1.343333e-02   p_joint 8.310000e-02

Joint ci ratio: 5.986956e-02	ci left: 9.389452e-02	ci right 9.971417e-02	k: 3871	n:40000
Cons ci ratio: 1.667645e-01	ci left: 1.248787e-02	ci right 1.478354e-02	k: 544	n:40000
KS ci ratio: 1.286770e-02	ci left: 6.942772e-01	ci right 7.032939e-01	k: 27952	n:40000
ANKS6   40000 perm   11 sec   (3724 perm/sec)   p_kst 6.988000e-01   p_cons 1.360000e-02   p_joint 9.677500e-02

Joint ci ratio: 6.152121e-02	ci left: 7.278490e-02	ci right 7.742457e-02	k: 3754	n:50000
Cons ci ratio: 1.540772e-01	ci left: 1.179458e-02	ci right 1.378258e-02	k: 638	n:50000
KS ci ratio: 1.145242e-02	ci left: 6.968451e-01	ci right 7.048916e-01	k: 35044	n:50000
ANKS6   50000 perm   14 sec   (3694 perm/sec)   p_kst 7.008800e-01   p_cons 1.276000e-02   p_joint 7.508000e-02

Joint ci ratio: 6.070382e-02	ci left: 6.300730e-02	ci right 6.696824e-02	k: 3898	n:60000
Cons ci ratio: 1.319323e-01	ci left: 1.354258e-02	ci right 1.547147e-02	k: 869	n:60000
KS ci ratio: 9.943883e-03	ci left: 7.178440e-01	ci right 7.250345e-01	k: 43287	n:60000
ANKS6   60000 perm   16 sec   (3664 perm/sec)   p_kst 7.214500e-01   p_cons 1.448333e-02   p_joint 6.496667e-02

Joint ci ratio: 5.578127e-02	ci left: 6.405881e-02	ci right 6.774870e-02	k: 4612	n:70000
Cons ci ratio: 1.226989e-01	ci left: 1.348894e-02	ci right 1.526594e-02	k: 1005	n:70000
KS ci ratio: 9.179593e-03	ci left: 7.192814e-01	ci right 7.259288e-01	k: 50583	n:70000
ANKS6   70000 perm   19 sec   (3622 perm/sec)   p_kst 7.226143e-01   p_cons 1.435714e-02   p_joint 6.588571e-02

Joint ci ratio: 5.041952e-02	ci left: 6.847604e-02	ci right 7.203020e-02	k: 5619	n:80000
Cons ci ratio: 1.136127e-01	ci left: 1.382882e-02	ci right 1.550664e-02	k: 1172	n:80000
KS ci ratio: 8.575523e-03	ci left: 7.200226e-01	ci right 7.262362e-01	k: 57851	n:80000
ANKS6   80000 perm   22 sec   (3582 perm/sec)   p_kst 7.231375e-01   p_cons 1.465000e-02   p_joint 7.023750e-02

Joint ci ratio: 4.778645e-02	ci left: 6.790187e-02	ci right 7.123705e-02	k: 6260	n:90000
Cons ci ratio: 1.072648e-01	ci left: 1.383731e-02	ci right 1.541643e-02	k: 1315	n:90000
KS ci ratio: 8.094816e-03	ci left: 7.197180e-01	ci right 7.255787e-01	k: 65039	n:90000
ANKS6   90000 perm   26 sec   (3486 perm/sec)   p_kst 7.226556e-01   p_cons 1.461111e-02   p_joint 6.955556e-02

Joint ci ratio: 4.515196e-02	ci left: 6.850526e-02	ci right 7.167973e-02	k: 7008	n:100000
Cons ci ratio: 1.012077e-01	ci left: 1.403143e-02	ci right 1.553690e-02	k: 1477	n:100000
KS ci ratio: 7.699070e-03	ci left: 7.188407e-01	ci right 7.244064e-01	k: 72163	n:100000
ANKS6   100000 perm   30 sec   (3383 perm/sec)   p_kst 7.216300e-01   p_cons 1.477000e-02   p_joint 7.008000e-02

Joint ci ratio: 3.630143e-02	ci left: 9.410293e-02	ci right 9.759114e-02	k: 10542	n:110000
Cons ci ratio: 9.595407e-02	ci left: 1.422781e-02	ci right 1.567065e-02	k: 1643	n:110000
KS ci ratio: 7.341658e-03	ci left: 7.189227e-01	ci right 7.242293e-01	k: 79374	n:110000
ANKS6   110000 perm   33 sec   (3326 perm/sec)   p_kst 7.215818e-01   p_cons 1.493636e-02   p_joint 9.583636e-02

Outputting figure to mutsig2_images.part000000000008/ANKS6.4_2676_110000_0.72158_0.014936_0.095836.png
                gene_name: ANKS6
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.098 

Current progress: 43 percent done.
ANXA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.529973e-02	ci left: 4.183742e-01	ci right 4.378677e-01	k: 4281	n:10000
Cons ci ratio: 2.013815e-02	ci left: 7.830994e-01	ci right 7.991306e-01	k: 7912	n:10000
KS ci ratio: 5.131657e-02	ci left: 3.589352e-01	ci right 3.779415e-01	k: 3684	n:10000
ANXA10   10000 perm   2 sec   (4672 perm/sec)   p_kst 3.684000e-01   p_cons 7.912000e-01   p_joint 4.281000e-01

Outputting figure to mutsig2_images.part000000000008/ANXA10.4_1023_10000_0.3684_0.7912_0.4281.png
                gene_name: ANXA10
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 45 percent done.
ANXA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.385595e-02	ci left: 2.648793e-01	ci right 2.824527e-01	k: 2736	n:10000
Cons ci ratio: 3.653334e-02	ci left: 5.252653e-01	ci right 5.449142e-01	k: 5351	n:10000
KS ci ratio: 9.796826e-02	ci left: 1.311983e-01	ci right 1.448133e-01	k: 1379	n:10000
ANXA4   10000 perm   2 sec   (4939 perm/sec)   p_kst 1.379000e-01   p_cons 5.351000e-01   p_joint 2.736000e-01

Outputting figure to mutsig2_images.part000000000008/ANXA4.4_1014_10000_0.1379_0.5351_0.2736.png
                gene_name: ANXA4
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 47 percent done.
AOC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.245670e-01	ci left: 8.446093e-02	ci right 9.577916e-02	k: 900	n:10000
Cons ci ratio: 1.236641e-01	ci left: 8.562704e-02	ci right 9.701233e-02	k: 912	n:10000
KS ci ratio: 1.413621e-01	ci left: 6.633192e-02	ci right 7.651945e-02	k: 713	n:10000
AOC2   10000 perm   2 sec   (5090 perm/sec)   p_kst 7.130000e-02   p_cons 9.120000e-02   p_joint 9.000000e-02

Joint ci ratio: 1.379597e-01	ci left: 3.611746e-02	ci right 4.151767e-02	k: 775	n:20000
Cons ci ratio: 8.781642e-02	ci left: 8.660762e-02	ci right 9.461186e-02	k: 1811	n:20000
KS ci ratio: 1.029005e-01	ci left: 6.415862e-02	ci right 7.116771e-02	k: 1352	n:20000
AOC2   20000 perm   4 sec   (4611 perm/sec)   p_kst 6.760000e-02   p_cons 9.055000e-02   p_joint 3.875000e-02

Joint ci ratio: 9.351148e-02	ci left: 5.274009e-02	ci right 5.794645e-02	k: 1659	n:30000
Cons ci ratio: 7.162986e-02	ci left: 8.750616e-02	ci right 9.404001e-02	k: 2722	n:30000
KS ci ratio: 8.402959e-02	ci left: 6.478437e-02	ci right 7.049971e-02	k: 2028	n:30000
AOC2   30000 perm   7 sec   (4385 perm/sec)   p_kst 6.760000e-02   p_cons 9.073333e-02   p_joint 5.530000e-02

Outputting figure to mutsig2_images.part000000000008/AOC2.4_2287_30000_0.0676_0.090733_0.0553.png
                gene_name: AOC2
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.058 

Current progress: 48 percent done.
AOC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.204255e-01	ci left: 9.000254e-02	ci right 1.016341e-01	k: 957	n:10000
Cons ci ratio: 1.127694e-01	ci left: 1.016890e-01	ci right 1.139406e-01	k: 1077	n:10000
KS ci ratio: 6.977475e-02	ci left: 2.314584e-01	ci right 2.482934e-01	k: 2398	n:10000
AOC3   10000 perm   2 sec   (4501 perm/sec)   p_kst 2.398000e-01   p_cons 1.077000e-01   p_joint 9.570000e-02

Joint ci ratio: 5.891172e-02	ci left: 1.758833e-01	ci right 1.866095e-01	k: 3624	n:20000
Cons ci ratio: 8.118383e-02	ci left: 1.001458e-01	ci right 1.086696e-01	k: 2087	n:20000
KS ci ratio: 4.938605e-02	ci left: 2.335985e-01	ci right 2.454774e-01	k: 4790	n:20000
AOC3   20000 perm   5 sec   (4127 perm/sec)   p_kst 2.395000e-01   p_cons 1.043500e-01   p_joint 1.812000e-01

Outputting figure to mutsig2_images.part000000000008/AOC3.4_2308_20000_0.2395_0.10435_0.1812.png
                gene_name: AOC3
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 50 percent done.
AP1G1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.220386e-02	ci left: 9.059684e-01	ci right 9.171905e-01	k: 9117	n:10000
KS ci ratio: 2.895871e-02	ci left: 6.374410e-01	ci right 6.562734e-01	k: 6469	n:10000
AP1G1   10000 perm   2 sec   (4598 perm/sec)   p_kst 6.469000e-01   p_cons 9.117000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/AP1G1.4_2570_10000_0.6469_0.9117_1.png
                gene_name: AP1G1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
ANKRD16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.581766e-02	ci left: 3.209831e-01	ci right 3.395159e-01	k: 3302	n:10000
Cons ci ratio: 5.681654e-02	ci left: 3.132420e-01	ci right 3.316615e-01	k: 3224	n:10000
KS ci ratio: 1.168182e-01	ci left: 9.525826e-02	ci right 1.071752e-01	k: 1011	n:10000
ANKRD16   10000 perm   2 sec   (5943 perm/sec)   p_kst 1.011000e-01   p_cons 3.224000e-01   p_joint 3.302000e-01

Joint ci ratio: 5.483735e-02	ci left: 1.978893e-01	ci right 2.090971e-01	k: 4069	n:20000
Cons ci ratio: 3.863217e-02	ci left: 3.332345e-01	ci right 3.464121e-01	k: 6796	n:20000
KS ci ratio: 8.310798e-02	ci left: 9.592472e-02	ci right 1.042920e-01	k: 2001	n:20000
ANKRD16   20000 perm   4 sec   (5278 perm/sec)   p_kst 1.000500e-01   p_cons 3.398000e-01   p_joint 2.034500e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD16.3_1114_20000_0.10005_0.3398_0.20345.png
                gene_name: ANKRD16
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 53 percent done.
ANKRD33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.304623e-01	ci left: 7.737381e-02	ci right 8.827067e-02	k: 827	n:10000
Cons ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
KS ci ratio: 6.755301e-02	ci left: 2.433161e-01	ci right 2.604287e-01	k: 2518	n:10000
ANKRD33   10000 perm   2 sec   (5880 perm/sec)   p_kst 2.518000e-01   p_cons 3.560000e-02   p_joint 8.270000e-02

Joint ci ratio: 9.855520e-02	ci left: 6.967630e-02	ci right 7.694833e-02	k: 1465	n:20000
Cons ci ratio: 1.517155e-01	ci left: 2.984481e-02	ci right 3.479239e-02	k: 645	n:20000
KS ci ratio: 4.806086e-02	ci left: 2.435642e-01	ci right 2.556087e-01	k: 4991	n:20000
ANKRD33   20000 perm   4 sec   (5143 perm/sec)   p_kst 2.495500e-01   p_cons 3.225000e-02   p_joint 7.325000e-02

Joint ci ratio: 7.326931e-02	ci left: 8.389978e-02	ci right 9.031377e-02	k: 2612	n:30000
Cons ci ratio: 1.158397e-01	ci left: 3.463305e-02	ci right 3.892393e-02	k: 1102	n:30000
KS ci ratio: 3.965806e-02	ci left: 2.407704e-01	ci right 2.505455e-01	k: 7369	n:30000
ANKRD33   30000 perm   7 sec   (4610 perm/sec)   p_kst 2.456333e-01   p_cons 3.673333e-02   p_joint 8.706667e-02

Joint ci ratio: 5.647443e-02	ci left: 1.044559e-01	ci right 1.105512e-01	k: 4299	n:40000
Cons ci ratio: 1.011324e-01	ci left: 3.436636e-02	ci right 3.805137e-02	k: 1447	n:40000
KS ci ratio: 3.436503e-02	ci left: 2.412139e-01	ci right 2.496731e-01	k: 9817	n:40000
ANKRD33   40000 perm   9 sec   (4271 perm/sec)   p_kst 2.454250e-01   p_cons 3.617500e-02   p_joint 1.074750e-01

Joint ci ratio: 5.251609e-02	ci left: 9.762089e-02	ci right 1.029056e-01	k: 5012	n:50000
Cons ci ratio: 9.024903e-02	ci left: 3.471669e-02	ci right 3.801742e-02	k: 1817	n:50000
KS ci ratio: 3.058101e-02	ci left: 2.435430e-01	ci right 2.511264e-01	k: 12366	n:50000
ANKRD33   50000 perm   13 sec   (3907 perm/sec)   p_kst 2.473200e-01   p_cons 3.634000e-02   p_joint 1.002400e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD33.3_1444_50000_0.24732_0.03634_0.10024.png
                gene_name: ANKRD33
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.10 

Current progress: 55 percent done.
ANKRD40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.382384e-02	ci left: 2.650773e-01	ci right 2.826547e-01	k: 2738	n:10000
Cons ci ratio: 1.726883e-02	ci left: 8.301215e-01	ci right 8.446814e-01	k: 8375	n:10000
KS ci ratio: 1.027259e-01	ci left: 1.205332e-01	ci right 1.336849e-01	k: 1270	n:10000
ANKRD40   10000 perm   2 sec   (5335 perm/sec)   p_kst 1.270000e-01   p_cons 8.375000e-01   p_joint 2.738000e-01

Joint ci ratio: 4.667751e-02	ci left: 2.545762e-01	ci right 2.667935e-01	k: 5213	n:20000
Cons ci ratio: 1.200112e-02	ci left: 8.370223e-01	ci right 8.471780e-01	k: 16843	n:20000
KS ci ratio: 7.259044e-02	ci left: 1.226116e-01	ci right 1.318970e-01	k: 2544	n:20000
ANKRD40   20000 perm   4 sec   (5082 perm/sec)   p_kst 1.272000e-01   p_cons 8.421500e-01   p_joint 2.606500e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD40.3_1127_20000_0.1272_0.84215_0.26065.png
                gene_name: ANKRD40
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 57 percent done.
ANKRD49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.888903e-02	ci left: 6.385473e-01	ci right 6.573664e-01	k: 6480	n:10000
Cons ci ratio: 6.913041e-02	ci left: 2.348172e-01	ci right 2.517326e-01	k: 2432	n:10000
KS ci ratio: 2.678422e-02	ci left: 6.724682e-01	ci right 6.908258e-01	k: 6817	n:10000
ANKRD49   10000 perm   2 sec   (5774 perm/sec)   p_kst 6.817000e-01   p_cons 2.432000e-01   p_joint 6.480000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD49.3_728_10000_0.6817_0.2432_0.648.png
                gene_name: ANKRD49
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 58 percent done.
ANKRD53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.191022e-02	ci left: 1.467809e-01	ci right 1.610214e-01	k: 1538	n:10000
Cons ci ratio: 8.588454e-02	ci left: 1.649446e-01	ci right 1.798468e-01	k: 1723	n:10000
KS ci ratio: 8.412142e-02	ci left: 1.708424e-01	ci right 1.859454e-01	k: 1783	n:10000
ANKRD53   10000 perm   2 sec   (5496 perm/sec)   p_kst 1.783000e-01   p_cons 1.723000e-01   p_joint 1.538000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD53.3_1748_10000_0.1783_0.1723_0.1538.png
                gene_name: ANKRD53
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 60 percent done.
ANKRD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.473387e-01	ci left: 6.121070e-02	ci right 7.104390e-02	k: 660	n:10000
Cons ci ratio: 1.459254e-01	ci left: 6.236946e-02	ci right 7.228440e-02	k: 672	n:10000
KS ci ratio: 8.528745e-02	ci left: 1.669102e-01	ci right 1.818800e-01	k: 1743	n:10000
ANKRD7   10000 perm   2 sec   (5521 perm/sec)   p_kst 1.743000e-01   p_cons 6.720000e-02   p_joint 6.600000e-02

Joint ci ratio: 8.159898e-02	ci left: 9.921306e-02	ci right 1.077026e-01	k: 2068	n:20000
Cons ci ratio: 1.030640e-01	ci left: 6.396343e-02	ci right 7.096296e-02	k: 1348	n:20000
KS ci ratio: 5.956496e-02	ci left: 1.726714e-01	ci right 1.833224e-01	k: 3559	n:20000
ANKRD7   20000 perm   4 sec   (5141 perm/sec)   p_kst 1.779500e-01   p_cons 6.740000e-02   p_joint 1.034000e-01

Joint ci ratio: 7.990342e-02	ci left: 7.129154e-02	ci right 7.725788e-02	k: 2227	n:30000
Cons ci ratio: 8.385242e-02	ci left: 6.504582e-02	ci right 7.077154e-02	k: 2036	n:30000
KS ci ratio: 4.866808e-02	ci left: 1.734551e-01	ci right 1.821407e-01	k: 5333	n:30000
ANKRD7   30000 perm   6 sec   (4880 perm/sec)   p_kst 1.777667e-01   p_cons 6.786667e-02   p_joint 7.423333e-02

Outputting figure to mutsig2_images.part000000000008/ANKRD7.3_789_30000_0.17777_0.067867_0.074233.png
                gene_name: ANKRD7
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.077 

Current progress: 62 percent done.
ANKS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.092113e-02	ci left: 2.837935e-01	ci right 3.017273e-01	k: 2927	n:10000
Cons ci ratio: 1.959461e-02	ci left: 7.921247e-01	ci right 8.079001e-01	k: 8001	n:10000
KS ci ratio: 8.630829e-02	ci left: 1.635689e-01	ci right 1.784233e-01	k: 1709	n:10000
ANKS3   10000 perm   2 sec   (4038 perm/sec)   p_kst 1.709000e-01   p_cons 8.001000e-01   p_joint 2.927000e-01

Outputting figure to mutsig2_images.part000000000008/ANKS3.3_2031_10000_0.1709_0.8001_0.2927.png
                gene_name: ANKS3
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 63 percent done.
ANKZF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.219358e-02	ci left: 1.459962e-01	ci right 1.602065e-01	k: 1530	n:10000
Cons ci ratio: 2.280672e-02	ci left: 7.384593e-01	ci right 7.555965e-01	k: 7471	n:10000
KS ci ratio: 1.822799e-01	ci left: 4.015916e-02	ci right 4.830902e-02	k: 441	n:10000
ANKZF1   10000 perm   2 sec   (5484 perm/sec)   p_kst 4.410000e-02   p_cons 7.471000e-01   p_joint 1.530000e-01

Joint ci ratio: 5.448462e-02	ci left: 1.999676e-01	ci right 2.112181e-01	k: 4111	n:20000
Cons ci ratio: 1.554869e-02	ci left: 7.546739e-01	ci right 7.665502e-01	k: 15213	n:20000
KS ci ratio: 1.293542e-01	ci left: 4.105370e-02	ci right 4.677985e-02	k: 877	n:20000
ANKZF1   20000 perm   4 sec   (4802 perm/sec)   p_kst 4.385000e-02   p_cons 7.606500e-01   p_joint 2.055500e-01

Joint ci ratio: 4.258150e-02	ci left: 2.155546e-01	ci right 2.249663e-01	k: 6607	n:30000
Cons ci ratio: 1.267048e-02	ci left: 7.565015e-01	ci right 7.661812e-01	k: 22841	n:30000
KS ci ratio: 1.049530e-01	ci left: 4.209669e-02	ci right 4.679205e-02	k: 1332	n:30000
ANKZF1   30000 perm   7 sec   (4612 perm/sec)   p_kst 4.440000e-02   p_cons 7.613667e-01   p_joint 2.202333e-01

Joint ci ratio: 4.054772e-02	ci left: 1.855455e-01	ci right 1.932496e-01	k: 7575	n:40000
Cons ci ratio: 1.092591e-02	ci left: 7.587257e-01	ci right 7.670861e-01	k: 30517	n:40000
KS ci ratio: 9.092802e-02	ci left: 4.237759e-02	ci right 4.643888e-02	k: 1775	n:40000
ANKZF1   40000 perm   9 sec   (4455 perm/sec)   p_kst 4.437500e-02   p_cons 7.629250e-01   p_joint 1.893750e-01

Outputting figure to mutsig2_images.part000000000008/ANKZF1.3_2233_40000_0.044375_0.76292_0.18937.png
                gene_name: ANKZF1
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.19 

Current progress: 65 percent done.
ANO7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.889386e-02	ci left: 8.036941e-01	ci right 8.191241e-01	k: 8115	n:10000
Cons ci ratio: 1.786148e-02	ci left: 8.205599e-01	ci right 8.354485e-01	k: 8281	n:10000
KS ci ratio: 3.576213e-02	ci left: 5.358791e-01	ci right 5.554943e-01	k: 5457	n:10000
ANO7   10000 perm   2 sec   (4536 perm/sec)   p_kst 5.457000e-01   p_cons 8.281000e-01   p_joint 8.115000e-01

Outputting figure to mutsig2_images.part000000000008/ANO7.3_2974_10000_0.5457_0.8281_0.8115.png
                gene_name: ANO7
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 67 percent done.
ANP32C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.662392e-02	ci left: 6.750875e-01	ci right 6.934051e-01	k: 6843	n:10000
Cons ci ratio: 8.109383e-02	ci left: 1.816632e-01	ci right 1.971182e-01	k: 1893	n:10000
KS ci ratio: 1.909115e-02	ci left: 8.004455e-01	ci right 8.159745e-01	k: 8083	n:10000
ANP32C   10000 perm   2 sec   (4391 perm/sec)   p_kst 8.083000e-01   p_cons 1.893000e-01   p_joint 6.843000e-01

Outputting figure to mutsig2_images.part000000000008/ANP32C.3_709_10000_0.8083_0.1893_0.6843.png
                gene_name: ANP32C
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 68 percent done.
ANTXR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.876252e-02	ci left: 6.405589e-01	ci right 6.593536e-01	k: 6500	n:10000
Cons ci ratio: 5.044595e-02	ci left: 3.668915e-01	ci right 3.859806e-01	k: 3764	n:10000
KS ci ratio: 3.248534e-02	ci left: 5.830946e-01	ci right 6.024514e-01	k: 5928	n:10000
ANTXR1   10000 perm   2 sec   (5269 perm/sec)   p_kst 5.928000e-01   p_cons 3.764000e-01   p_joint 6.500000e-01

Outputting figure to mutsig2_images.part000000000008/ANTXR1.3_1844_10000_0.5928_0.3764_0.65.png
                gene_name: ANTXR1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 70 percent done.
ANTXR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.809519e-03	ci left: 9.476267e-01	ci right 9.561076e-01	k: 9520	n:10000
Cons ci ratio: 3.032889e-02	ci left: 6.159285e-01	ci right 6.349984e-01	k: 6255	n:10000
KS ci ratio: 2.763965e-02	ci left: 6.585713e-01	ci right 6.771308e-01	k: 6679	n:10000
ANTXR2   10000 perm   2 sec   (4880 perm/sec)   p_kst 6.679000e-01   p_cons 6.255000e-01   p_joint 9.520000e-01

Outputting figure to mutsig2_images.part000000000008/ANTXR2.3_1577_10000_0.6679_0.6255_0.952.png
                gene_name: ANTXR2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 72 percent done.
ANUBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.068814e-02	ci left: 4.714637e-01	ci right 4.911472e-01	k: 4813	n:10000
Cons ci ratio: 1.858457e-02	ci left: 8.087717e-01	ci right 8.240436e-01	k: 8165	n:10000
KS ci ratio: 5.457943e-02	ci left: 3.309118e-01	ci right 3.495813e-01	k: 3402	n:10000
ANUBL1   10000 perm   2 sec   (4408 perm/sec)   p_kst 3.402000e-01   p_cons 8.165000e-01   p_joint 4.813000e-01

Outputting figure to mutsig2_images.part000000000008/ANUBL1.3_2220_10000_0.3402_0.8165_0.4813.png
                gene_name: ANUBL1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 73 percent done.
ANXA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.039576e-02	ci left: 2.873607e-01	ci right 3.053581e-01	k: 2963	n:10000
Cons ci ratio: 4.318138e-02	ci left: 4.419113e-01	ci right 4.615169e-01	k: 4517	n:10000
KS ci ratio: 9.401317e-02	ci left: 1.410934e-01	ci right 1.551123e-01	k: 1480	n:10000
ANXA11   10000 perm   2 sec   (4913 perm/sec)   p_kst 1.480000e-01   p_cons 4.517000e-01   p_joint 2.963000e-01

Outputting figure to mutsig2_images.part000000000008/ANXA11.3_1574_10000_0.148_0.4517_0.2963.png
                gene_name: ANXA11
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 75 percent done.
ANXA13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.926472e-02	ci left: 4.892517e-01	ci right 5.089489e-01	k: 4991	n:10000
Cons ci ratio: 7.911566e-02	ci left: 1.892437e-01	ci right 2.049332e-01	k: 1970	n:10000
KS ci ratio: 4.475820e-02	ci left: 4.242563e-01	ci right 4.437821e-01	k: 4340	n:10000
ANXA13   10000 perm   2 sec   (5804 perm/sec)   p_kst 4.340000e-01   p_cons 1.970000e-01   p_joint 4.991000e-01

Outputting figure to mutsig2_images.part000000000008/ANXA13.3_1122_10000_0.434_0.197_0.4991.png
                gene_name: ANXA13
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 77 percent done.
ANXA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.134564e-02	ci left: 4.634731e-01	ci right 4.831424e-01	k: 4733	n:10000
Cons ci ratio: 1.283610e-01	ci left: 7.979957e-02	ci right 9.084340e-02	k: 852	n:10000
KS ci ratio: 2.915544e-02	ci left: 6.343234e-01	ci right 6.531928e-01	k: 6438	n:10000
ANXA6   10000 perm   2 sec   (5041 perm/sec)   p_kst 6.438000e-01   p_cons 8.520000e-02   p_joint 4.733000e-01

Joint ci ratio: 3.893108e-02	ci left: 3.298013e-01	ci right 3.429463e-01	k: 6727	n:20000
Cons ci ratio: 8.645901e-02	ci left: 8.915632e-02	ci right 9.726239e-02	k: 1863	n:20000
KS ci ratio: 2.047105e-02	ci left: 6.403809e-01	ci right 6.536763e-01	k: 12941	n:20000
ANXA6   20000 perm   4 sec   (4664 perm/sec)   p_kst 6.470500e-01   p_cons 9.315000e-02   p_joint 3.363500e-01

Outputting figure to mutsig2_images.part000000000008/ANXA6.3_2122_20000_0.64705_0.09315_0.33635.png
                gene_name: ANXA6
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 78 percent done.
ANXA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.772291e-01	ci left: 1.688052e-02	ci right 2.240432e-02	k: 195	n:10000
Cons ci ratio: 2.198857e-01	ci left: 2.740624e-02	ci right 3.427066e-02	k: 307	n:10000
KS ci ratio: 1.360970e-01	ci left: 7.136438e-02	ci right 8.188384e-02	k: 765	n:10000
ANXA7   10000 perm   2 sec   (5331 perm/sec)   p_kst 7.650000e-02   p_cons 3.070000e-02   p_joint 1.950000e-02

Joint ci ratio: 2.095217e-01	ci left: 1.539613e-02	ci right 1.904617e-02	k: 343	n:20000
Cons ci ratio: 1.636116e-01	ci left: 2.561344e-02	ci right 3.022518e-02	k: 557	n:20000
KS ci ratio: 9.339492e-02	ci left: 7.715702e-02	ci right 8.476534e-02	k: 1618	n:20000
ANXA7   20000 perm   4 sec   (4949 perm/sec)   p_kst 8.090000e-02   p_cons 2.785000e-02   p_joint 1.715000e-02

Joint ci ratio: 1.171132e-01	ci left: 3.388795e-02	ci right 3.813586e-02	k: 1079	n:30000
Cons ci ratio: 1.275258e-01	ci left: 2.858305e-02	ci right 3.250857e-02	k: 915	n:30000
KS ci ratio: 7.618039e-02	ci left: 7.800215e-02	ci right 8.421259e-02	k: 2432	n:30000
ANXA7   30000 perm   6 sec   (4896 perm/sec)   p_kst 8.106667e-02   p_cons 3.050000e-02   p_joint 3.596667e-02

Joint ci ratio: 8.297326e-02	ci left: 5.065296e-02	ci right 5.506224e-02	k: 2113	n:40000
Cons ci ratio: 1.099007e-01	ci left: 2.912846e-02	ci right 3.254010e-02	k: 1232	n:40000
KS ci ratio: 6.616322e-02	ci left: 7.799955e-02	ci right 8.336151e-02	k: 3226	n:40000
ANXA7   40000 perm   9 sec   (4528 perm/sec)   p_kst 8.065000e-02   p_cons 3.080000e-02   p_joint 5.282500e-02

Joint ci ratio: 7.819180e-02	ci left: 4.598555e-02	ci right 4.974716e-02	k: 2392	n:50000
Cons ci ratio: 9.778409e-02	ci left: 2.961526e-02	ci right 3.267949e-02	k: 1556	n:50000
KS ci ratio: 5.927226e-02	ci left: 7.805077e-02	ci right 8.283807e-02	k: 4021	n:50000
ANXA7   50000 perm   11 sec   (4439 perm/sec)   p_kst 8.042000e-02   p_cons 3.112000e-02   p_joint 4.784000e-02

Outputting figure to mutsig2_images.part000000000008/ANXA7.3_1519_50000_0.08042_0.03112_0.04784.png
                gene_name: ANXA7
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.050 

Current progress: 80 percent done.
AP1AR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.373175e-02	ci left: 5.647390e-01	ci right 5.842175e-01	k: 5745	n:10000
Cons ci ratio: 1.084746e-01	ci left: 1.092005e-01	ci right 1.218245e-01	k: 1154	n:10000
KS ci ratio: 2.174454e-02	ci left: 7.562597e-01	ci right 7.729859e-01	k: 7647	n:10000
AP1AR   10000 perm   2 sec   (6149 perm/sec)   p_kst 7.647000e-01   p_cons 1.154000e-01   p_joint 5.745000e-01

Joint ci ratio: 3.210340e-02	ci left: 4.201807e-01	ci right 4.339406e-01	k: 8541	n:20000
Cons ci ratio: 7.677970e-02	ci left: 1.108556e-01	ci right 1.197565e-01	k: 2305	n:20000
KS ci ratio: 1.544407e-02	ci left: 7.571444e-01	ci right 7.689790e-01	k: 15262	n:20000
AP1AR   20000 perm   4 sec   (5532 perm/sec)   p_kst 7.631000e-01   p_cons 1.152500e-01   p_joint 4.270500e-01

Outputting figure to mutsig2_images.part000000000008/AP1AR.3_949_20000_0.7631_0.11525_0.42705.png
                gene_name: AP1AR
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 82 percent done.
ANKRD13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.509652e-02	ci left: 5.451948e-01	ci right 5.647731e-01	k: 5550	n:10000
Cons ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
KS ci ratio: 2.152427e-01	ci left: 2.863733e-02	ci right 3.563870e-02	k: 320	n:10000
ANKRD13B   10000 perm   2 sec   (5256 perm/sec)   p_kst 3.200000e-02   p_cons 4.270000e-02   p_joint 5.550000e-01

Joint ci ratio: 1.672679e-02	ci left: 7.268606e-01	ci right 7.391715e-01	k: 14661	n:20000
Cons ci ratio: 1.322148e-01	ci left: 3.931020e-02	ci right 4.492391e-02	k: 841	n:20000
KS ci ratio: 1.523258e-01	ci left: 2.960404e-02	ci right 3.453324e-02	k: 640	n:20000
ANKRD13B   20000 perm   4 sec   (4679 perm/sec)   p_kst 3.200000e-02   p_cons 4.205000e-02   p_joint 7.330500e-01

Joint ci ratio: 1.310492e-02	ci left: 7.439523e-01	ci right 7.537995e-01	k: 22467	n:30000
Cons ci ratio: 1.071591e-01	ci left: 4.040740e-02	ci right 4.501502e-02	k: 1280	n:30000
KS ci ratio: 1.228321e-01	ci left: 3.081318e-02	ci right 3.487795e-02	k: 984	n:30000
ANKRD13B   30000 perm   6 sec   (4705 perm/sec)   p_kst 3.280000e-02   p_cons 4.266667e-02   p_joint 7.489000e-01

Joint ci ratio: 7.322711e-03	ci left: 8.742724e-01	ci right 8.807227e-01	k: 35101	n:40000
Cons ci ratio: 9.133237e-02	ci left: 4.201077e-02	ci right 4.605576e-02	k: 1760	n:40000
KS ci ratio: 1.073233e-01	ci left: 3.054025e-02	ci right 3.402808e-02	k: 1290	n:40000
ANKRD13B   40000 perm   9 sec   (4584 perm/sec)   p_kst 3.225000e-02   p_cons 4.400000e-02   p_joint 8.775250e-01

Joint ci ratio: 1.500974e-02	ci left: 5.726553e-01	ci right 5.813358e-01	k: 28850	n:50000
Cons ci ratio: 8.183141e-02	ci left: 4.208155e-02	ci right 4.569164e-02	k: 2193	n:50000
KS ci ratio: 9.595467e-02	ci left: 3.074801e-02	ci right 3.386660e-02	k: 1614	n:50000
ANKRD13B   50000 perm   11 sec   (4531 perm/sec)   p_kst 3.228000e-02   p_cons 4.386000e-02   p_joint 5.770000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD13B.2_1941_50000_0.03228_0.04386_0.577.png
                gene_name: ANKRD13B
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 83 percent done.
ANKRD13D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.377012e-02	ci left: 4.352269e-01	ci right 4.548052e-01	k: 4450	n:10000
Cons ci ratio: 5.362097e-02	ci left: 3.388581e-01	ci right 3.576304e-01	k: 3482	n:10000
KS ci ratio: 3.682802e-02	ci left: 5.212613e-01	ci right 5.409206e-01	k: 5311	n:10000
ANKRD13D   10000 perm   2 sec   (5740 perm/sec)   p_kst 5.311000e-01   p_cons 3.482000e-01   p_joint 4.450000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD13D.2_1878_10000_0.5311_0.3482_0.445.png
                gene_name: ANKRD13D
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 85 percent done.
ANKRD28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.679252e-02	ci left: 4.026288e-01	ci right 4.220223e-01	k: 4123	n:10000
KS ci ratio: 4.027488e-02	ci left: 4.765590e-01	ci right 4.962490e-01	k: 4864	n:10000
ANKRD28   10000 perm   2 sec   (5199 perm/sec)   p_kst 4.864000e-01   p_cons 4.123000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANKRD28.2_3274_10000_0.4864_0.4123_1.png
                gene_name: ANKRD28
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
ANKRD29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.630055e-02	ci left: 3.172115e-01	ci right 3.356897e-01	k: 3264	n:10000
Cons ci ratio: 2.990320e-02	ci left: 6.225610e-01	ci right 6.415620e-01	k: 6321	n:10000
KS ci ratio: 2.560455e-01	ci left: 1.996408e-02	ci right 2.591832e-02	k: 228	n:10000
ANKRD29   10000 perm   2 sec   (5797 perm/sec)   p_kst 2.280000e-02   p_cons 6.321000e-01   p_joint 3.264000e-01

Joint ci ratio: 7.563504e-02	ci left: 1.139039e-01	ci right 1.229073e-01	k: 2367	n:20000
Cons ci ratio: 2.112529e-02	ci left: 6.258245e-01	ci right 6.392369e-01	k: 12651	n:20000
KS ci ratio: 1.878865e-01	ci left: 1.929613e-02	ci right 2.334471e-02	k: 425	n:20000
ANKRD29   20000 perm   4 sec   (5498 perm/sec)   p_kst 2.125000e-02   p_cons 6.325500e-01   p_joint 1.183500e-01

Joint ci ratio: 4.346416e-02	ci left: 2.086428e-01	ci right 2.179461e-01	k: 6398	n:30000
Cons ci ratio: 1.733009e-02	ci left: 6.248754e-01	ci right 6.358327e-01	k: 18911	n:30000
KS ci ratio: 1.517203e-01	ci left: 2.011312e-02	ci right 2.344705e-02	k: 652	n:30000
ANKRD29   30000 perm   6 sec   (5175 perm/sec)   p_kst 2.173333e-02   p_cons 6.303667e-01   p_joint 2.132667e-01

Joint ci ratio: 5.372085e-02	ci left: 1.143102e-01	ci right 1.206454e-01	k: 4698	n:40000
Cons ci ratio: 1.495988e-02	ci left: 6.271267e-01	ci right 6.366042e-01	k: 25275	n:40000
KS ci ratio: 1.303020e-01	ci left: 2.068161e-02	ci right 2.358834e-02	k: 884	n:40000
ANKRD29   40000 perm   8 sec   (4902 perm/sec)   p_kst 2.210000e-02   p_cons 6.318750e-01   p_joint 1.174500e-01

Joint ci ratio: 3.312118e-02	ci left: 2.152025e-01	ci right 2.224702e-01	k: 10941	n:50000
Cons ci ratio: 1.341152e-02	ci left: 6.265525e-01	ci right 6.350323e-01	k: 31540	n:50000
KS ci ratio: 1.166673e-01	ci left: 2.079038e-02	ci right 2.338552e-02	k: 1103	n:50000
ANKRD29   50000 perm   10 sec   (4831 perm/sec)   p_kst 2.206000e-02   p_cons 6.308000e-01   p_joint 2.188200e-01

Joint ci ratio: 3.010685e-02	ci left: 2.169725e-01	ci right 2.236213e-01	k: 13217	n:60000
Cons ci ratio: 1.224959e-02	ci left: 6.266734e-01	ci right 6.344139e-01	k: 37833	n:60000
KS ci ratio: 1.064530e-01	ci left: 2.092230e-02	ci right 2.329091e-02	k: 1325	n:60000
ANKRD29   60000 perm   13 sec   (4698 perm/sec)   p_kst 2.208333e-02   p_cons 6.305500e-01   p_joint 2.202833e-01

Joint ci ratio: 3.322678e-02	ci left: 1.630943e-01	ci right 1.686192e-01	k: 11609	n:70000
Cons ci ratio: 1.133556e-02	ci left: 6.271839e-01	ci right 6.343481e-01	k: 44154	n:70000
KS ci ratio: 9.813565e-02	ci left: 2.119097e-02	ci right 2.339174e-02	k: 1559	n:70000
ANKRD29   70000 perm   16 sec   (4429 perm/sec)   p_kst 2.227143e-02   p_cons 6.307714e-01   p_joint 1.658429e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD29.2_946_70000_0.022271_0.63077_0.16584.png
                gene_name: ANKRD29
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 88 percent done.
ANKRD34B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.679838e-03	ci left: 9.378606e-01	ci right 9.470795e-01	k: 9426	n:10000
Cons ci ratio: 2.620585e-02	ci left: 6.819395e-01	ci right 7.001491e-01	k: 6911	n:10000
KS ci ratio: 6.913041e-02	ci left: 2.348172e-01	ci right 2.517326e-01	k: 2432	n:10000
ANKRD34B   10000 perm   2 sec   (5582 perm/sec)   p_kst 2.432000e-01   p_cons 6.911000e-01   p_joint 9.426000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD34B.2_1549_10000_0.2432_0.6911_0.9426.png
                gene_name: ANKRD34B
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 90 percent done.
ANKRD45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.512495e-02	ci left: 5.447941e-01	ci right 5.643741e-01	k: 5546	n:10000
Cons ci ratio: 3.707269e-02	ci left: 5.179584e-01	ci right 5.376254e-01	k: 5278	n:10000
KS ci ratio: 3.276867e-02	ci left: 5.788806e-01	ci right 5.982678e-01	k: 5886	n:10000
ANKRD45   10000 perm   2 sec   (6412 perm/sec)   p_kst 5.886000e-01   p_cons 5.278000e-01   p_joint 5.546000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD45.2_821_10000_0.5886_0.5278_0.5546.png
                gene_name: ANKRD45
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 92 percent done.
ANKRD56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.364781e-02	ci left: 2.661660e-01	ci right 2.837652e-01	k: 2749	n:10000
Cons ci ratio: 6.914919e-02	ci left: 2.347184e-01	ci right 2.516315e-01	k: 2431	n:10000
KS ci ratio: 4.177090e-02	ci left: 4.583805e-01	ci right 4.780380e-01	k: 4682	n:10000
ANKRD56   10000 perm   2 sec   (5307 perm/sec)   p_kst 4.682000e-01   p_cons 2.431000e-01   p_joint 2.749000e-01

Outputting figure to mutsig2_images.part000000000008/ANKRD56.2_2386_10000_0.4682_0.2431_0.2749.png
                gene_name: ANKRD56
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 93 percent done.
ANO10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.608188e-03	ci left: 9.386903e-01	ci right 9.478494e-01	k: 9434	n:10000
KS ci ratio: 3.450369e-02	ci left: 5.536120e-01	ci right 5.731511e-01	k: 5634	n:10000
ANO10   10000 perm   2 sec   (5534 perm/sec)   p_kst 5.634000e-01   p_cons 9.434000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANO10.2_2031_10000_0.5634_0.9434_1.png
                gene_name: ANO10
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
ANP32D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.069893e-02	ci left: 6.102019e-01	ci right 6.293283e-01	k: 6198	n:10000
Cons ci ratio: 6.298409e-02	ci left: 2.703238e-01	ci right 2.880050e-01	k: 2791	n:10000
KS ci ratio: 1.655961e-02	ci left: 8.414233e-01	ci right 8.555730e-01	k: 8486	n:10000
ANP32D   10000 perm   2 sec   (6637 perm/sec)   p_kst 8.486000e-01   p_cons 2.791000e-01   p_joint 6.198000e-01

Outputting figure to mutsig2_images.part000000000008/ANP32D.2_400_10000_0.8486_0.2791_0.6198.png
                gene_name: ANP32D
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 97 percent done.
ANXA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.331531e-02	ci left: 3.414412e-01	ci right 3.602457e-01	k: 3508	n:10000
KS ci ratio: 3.714711e-02	ci left: 5.169577e-01	ci right 5.366267e-01	k: 5268	n:10000
ANXA2   10000 perm   3 sec   (3956 perm/sec)   p_kst 5.268000e-01   p_cons 3.508000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/ANXA2.2_1126_10000_0.5268_0.3508_1.png
                gene_name: ANXA2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
AP1M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.208232e-02	ci left: 9.076136e-01	ci right 9.187443e-01	k: 9133	n:10000
KS ci ratio: 2.197400e-02	ci left: 7.524148e-01	ci right 7.692330e-01	k: 7609	n:10000
AP1M1   10000 perm   2 sec   (5824 perm/sec)   p_kst 7.609000e-01   p_cons 9.133000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000008/AP1M1.2_1360_10000_0.7609_0.9133_1.png
                gene_name: AP1M1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000008
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 8 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1701>
Subject: Job 9893814: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1701>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000009> was used as the working directory.
Started at Fri Oct  5 23:53:03 2012
Results reported at Sat Oct  6 04:07:23 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000009.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000009.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 9  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000009.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  15135.69 sec.
    Max Memory :      3565 MB
    Max Swap   :      6040 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
9
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 9
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 9: processing genes 722 - 811
Calculating significance of each gene.
Using projection method.
722	AP1S1	4.556168e-01
723	AP1S2	2.737740e-01
724	AP1S3	1
In gene AP2A1 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 2591    n = 1	mu =   8.55e-07
725	AP2A1	6.888544e-01
726	AP2A2	9.335147e-01
727	AP2B1	7.308757e-01
728	AP2M1	2.506346e-01
729	AP2S1	1
730	AP3B1	1.397484e-01
731	AP3B2	9.845244e-01
732	AP3D1	9.980961e-01
733	AP3M1	8.701206e-01
734	AP3M2	7.797748e-01
735	AP3S1	3.444442e-01
736	AP3S2	2.729074e-01
737	AP4B1	8.948293e-01
738	AP4E1	5.549609e-01
739	AP4M1	3.718706e-01
740	AP4S1	1
741	APAF1	3.216856e-01
742	APBA1	4.511338e-01
743	APBA2	3.671141e-01
744	APBA3	1
745	APBB1	3.254001e-01
746	APBB1IP	3.383797e-02
747	APBB2	8.274933e-01
748	APBB3	4.767261e-01
In gene APC the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 8592    n = 1	mu =   1.03e-07
    COAD-AA-3522	categ 6	N = 8592    n = 1	mu =   1.03e-07
    COAD-AA-3530	categ 6	N = 8592    n = 1	mu =   1.97e-07
    COAD-AA-3538	categ 6	N = 8592    n = 1	mu =   1.03e-07
    COAD-AA-3548	categ 6	N = 8592    n = 1	mu =   1.03e-07
    COAD-AA-3552	categ 6	N = 8592    n = 1	mu =   1.38e-07
    COAD-AA-3553	categ 6	N = 8592    n = 1	mu =   1.72e-07
    COAD-AA-3561	categ 6	N = 8592    n = 1	mu =   1.72e-07
    COAD-AA-3562	categ 6	N = 8592    n = 1	mu =   1.38e-07
    COAD-AA-3678	categ 6	N = 8592    n = 1	mu =   2.96e-07
    COAD-AA-3851	categ 6	N = 8592    n = 1	mu =   3.95e-07
    COAD-AA-3852	categ 6	N = 8592    n = 1	mu =   3.62e-07
    COAD-AA-3854	categ 6	N = 8592    n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 8592    n = 1	mu =   8.55e-07
    COAD-AA-A00K	categ 6	N = 8592    n = 1	mu =   5.86e-07
    COAD-AA-A00W	categ 6	N = 8592    n = 1	mu =   1.38e-07
    COAD-AA-A00Z	categ 6	N = 8592    n = 1	mu =   3.45e-08
    COAD-AA-A017	categ 6	N = 8592    n = 1	mu =   2.63e-07
    COAD-AA-A01I	categ 6	N = 8592    n = 1	mu =   3.29e-07
    COAD-AA-A01Z	categ 6	N = 8592    n = 1	mu =   3.62e-07
    READ-AF-2692	categ 6	N = 8592    n = 1	mu =   1.72e-07
    READ-AF-3400	categ 6	N = 8592    n = 1	mu =   6.90e-08
    READ-AG-3580	categ 6	N = 8592    n = 1	mu =   1.72e-07
    READ-AG-3584	categ 6	N = 8592    n = 1	mu =   1.72e-07
    READ-AG-3594	categ 6	N = 8592    n = 1	mu =   1.72e-07
    READ-AG-3605	categ 6	N = 8592    n = 1	mu =   1.38e-07
    READ-AG-3727	categ 6	N = 8592    n = 1	mu =   2.96e-07
    READ-AG-3883	categ 6	N = 8592    n = 1	mu =   4.60e-07
    READ-AG-3890	categ 6	N = 8592    n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 8592    n = 1	mu =   3.29e-07
    READ-AG-A008	categ 6	N = 8592    n = 1	mu =   1.03e-07
    READ-AG-A01L	categ 6	N = 8592    n = 1	mu =   3.23e-07
    COAD-AA-3519	categ 7	N = 8592    n = 1	mu =   3.45e-08
    COAD-AA-3531	categ 7	N = 8592    n = 1	mu =   3.45e-08
    COAD-AA-3837	categ 7	N = 8592    n = 1	mu =   3.29e-08
    COAD-AA-3860	categ 7	N = 8592    n = 1	mu =   3.29e-08
    COAD-AA-3975	categ 7	N = 8592    n = 1	mu =   3.29e-08
    COAD-AA-A00U	categ 7	N = 8592    n = 1	mu =   3.45e-08
    COAD-AA-A01S	categ 7	N = 8592    n = 1	mu =   3.29e-08
    COAD-AA-A02F	categ 7	N = 8592    n = 1	mu =   3.29e-08
    COAD-AA-A02J	categ 7	N = 8592    n = 1	mu =   3.29e-08
    READ-AG-3583	categ 7	N = 8592    n = 1	mu =   3.45e-08
    READ-AG-3587	categ 7	N = 8592    n = 1	mu =   3.45e-08
    READ-AG-3601	categ 7	N = 8592    n = 1	mu =   3.45e-08
    READ-AG-3909	categ 7	N = 8592    n = 1	mu =   3.29e-08
    READ-AG-4005	categ 7	N = 8592    n = 1	mu =   3.29e-08
    READ-AG-A020	categ 7	N = 8592    n = 1	mu =   3.29e-08
749	APC	0
750	APC2	9.989316e-01
751	APCDD1	3.406517e-01
752	APCDD1L	1.256902e-01
753	APCS	3.992261e-01
754	APEH	9.807168e-01
755	APEX1	2.085280e-01
756	APEX2	8.505308e-01
757	APH1A	1
758	APH1B	2.838514e-01
759	API5	8.314865e-01
760	APIP	1
761	APITD1	1
762	APLF	6.038953e-02
763	APLN	1
764	APLNR	1.680859e-01
765	APLP1	8.412447e-03
766	APLP2	4.739503e-01
767	APOA1BP	2.619078e-01
768	APOA2	3.804579e-01
769	APOA4	1
770	APOA5	7.949897e-01
771	APOB	5.435104e-02
772	APOB48R	9.197856e-01
773	APOBEC1	4.491199e-01
774	APOBEC2	6.200567e-01
775	APOBEC3A	6.412285e-01
776	APOBEC3B	1
777	APOBEC3C	2.739160e-01
778	APOBEC3D	3.915590e-01
779	APOBEC3F	7.173755e-01
780	APOBEC3G	4.284238e-01
781	APOBEC3H	1
782	APOBEC4	1.697601e-01
783	APOC1	2.092094e-01
784	APOC2	1.139372e-01
785	APOC3	1
786	APOC4	1
787	APOD	6.974309e-01
788	APOE	3.597775e-01
789	APOF	1
790	APOH	2.490929e-01
791	APOL1	6.757620e-01
792	APOL2	7.815012e-01
793	APOL3	8.008696e-01
794	APOL4	1
795	APOL5	5.772394e-01
796	APOL6	1
797	APOLD1	7.176446e-01
798	APOM	5.413054e-01
799	APOO	1
800	APOOL	4.220999e-01
801	APP	9.906917e-01
802	APPBP2	8.796056e-01
803	APPL1	1.163898e-02
804	APPL2	4.771011e-01
805	APRT	1
806	APTX	1
807	AQP1	6.512824e-01
808	AQP10	1.194581e-01
809	AQP11	6.866477e-01
810	AQP12A	4.987281e-01
811	AQP12B	3.500725e-01
Done

Running MutSig 2:
Scatter job 9: processing genes 722 - 811
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
APC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.268333e-01	ci left: 1.861361e-03	ci right 4.044256e-03	k: 28	n:10000
Cons ci ratio: 1.542902e-02	ci left: 8.590646e-01	ci right 8.725215e-01	k: 8659	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
APC   10000 perm   10 sec   (1017 perm/sec)   p_kst 1.000000e-04   p_cons 8.659000e-01   p_joint 2.800000e-03

Joint ci ratio: 5.772931e-01	ci left: 1.641624e-03	ci right 3.009532e-03	k: 45	n:20000
Cons ci ratio: 1.073466e-02	ci left: 8.648543e-01	ci right 8.742380e-01	k: 17392	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
APC   20000 perm   23 sec   (880 perm/sec)   p_kst 5.000000e-05   p_cons 8.696000e-01   p_joint 2.250000e-03

Joint ci ratio: 5.098300e-01	ci left: 1.468378e-03	ci right 2.498574e-03	k: 58	n:30000
Cons ci ratio: 8.794154e-03	ci left: 8.649609e-01	ci right 8.726342e-01	k: 26065	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
APC   30000 perm   33 sec   (917 perm/sec)   p_kst 3.333333e-05   p_cons 8.688333e-01   p_joint 1.933333e-03

Joint ci ratio: 5.234587e-01	ci left: 1.036001e-03	ci right 1.789380e-03	k: 55	n:40000
Cons ci ratio: 7.662832e-03	ci left: 8.640626e-01	ci right 8.707340e-01	k: 34697	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
APC   40000 perm   43 sec   (934 perm/sec)   p_kst 2.500000e-05   p_cons 8.674250e-01   p_joint 1.375000e-03

Joint ci ratio: 5.057610e-01	ci left: 8.983883e-04	ci right 1.521854e-03	k: 59	n:50000
Cons ci ratio: 7.824708e-03	ci left: 8.305883e-01	ci right 8.371329e-01	k: 41694	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
APC   50000 perm   53 sec   (942 perm/sec)   p_kst 2.000000e-05   p_cons 8.338800e-01   p_joint 1.180000e-03

Joint ci ratio: 5.189657e-01	ci left: 7.051046e-04	ci right 1.211842e-03	k: 56	n:60000
Cons ci ratio: 7.172039e-03	ci left: 8.297394e-01	ci right 8.357283e-01	k: 49965	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
APC   60000 perm   64 sec   (931 perm/sec)   p_kst 1.666667e-05   p_cons 8.327500e-01   p_joint 9.333333e-04

Joint ci ratio: 6.046833e-01	ci left: 4.203504e-04	ci right 7.945046e-04	k: 41	n:70000
Cons ci ratio: 6.640174e-03	ci left: 8.299572e-01	ci right 8.355009e-01	k: 58292	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
APC   70000 perm   75 sec   (935 perm/sec)   p_kst 1.428571e-05   p_cons 8.327429e-01   p_joint 5.857143e-04

Joint ci ratio: 5.976300e-01	ci left: 3.783992e-04	ci right 7.095820e-04	k: 42	n:80000
Cons ci ratio: 6.214767e-03	ci left: 8.299821e-01	ci right 8.351687e-01	k: 66607	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
APC   80000 perm   85 sec   (937 perm/sec)   p_kst 1.250000e-05   p_cons 8.325875e-01   p_joint 5.250000e-04

Joint ci ratio: 5.976483e-01	ci left: 3.363523e-04	ci right 6.307460e-04	k: 42	n:90000
Cons ci ratio: 5.856033e-03	ci left: 8.302900e-01	ci right 8.351775e-01	k: 74947	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
APC   90000 perm   97 sec   (932 perm/sec)   p_kst 1.111111e-05   p_cons 8.327444e-01   p_joint 4.666667e-04

Joint ci ratio: 5.716535e-01	ci left: 3.367969e-04	ci right 6.135284e-04	k: 46	n:100000
Cons ci ratio: 5.553410e-03	ci left: 8.305228e-01	ci right 8.351578e-01	k: 83285	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
APC   100000 perm   108 sec   (928 perm/sec)   p_kst 1.000000e-05   p_cons 8.328500e-01   p_joint 4.600000e-04

Joint ci ratio: 5.284381e-01	ci left: 3.688069e-04	ci right 6.404820e-04	k: 54	n:110000
Cons ci ratio: 5.291593e-03	ci left: 8.308100e-01	ci right 8.352270e-01	k: 91633	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
APC   110000 perm   119 sec   (926 perm/sec)   p_kst 9.090909e-06   p_cons 8.330273e-01   p_joint 4.909091e-04

Joint ci ratio: 5.190912e-01	ci left: 3.525336e-04	ci right 6.059633e-04	k: 56	n:120000
Cons ci ratio: 5.074545e-03	ci left: 8.304504e-01	ci right 8.346835e-01	k: 99909	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
APC   120000 perm   130 sec   (926 perm/sec)   p_kst 8.333333e-06   p_cons 8.325750e-01   p_joint 4.666667e-04

Joint ci ratio: 5.488000e-01	ci left: 2.854820e-04	ci right 5.070364e-04	k: 50	n:130000
Cons ci ratio: 4.877447e-03	ci left: 8.304202e-01	ci right 8.344880e-01	k: 108220	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
APC   130000 perm   141 sec   (925 perm/sec)   p_kst 7.692308e-06   p_cons 8.324615e-01   p_joint 3.846154e-04

Joint ci ratio: 6.276127e-01	ci left: 1.920859e-04	ci right 3.725381e-04	k: 38	n:140000
Cons ci ratio: 4.705391e-03	ci left: 8.301747e-01	ci right 8.340973e-01	k: 116500	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
APC   140000 perm   152 sec   (922 perm/sec)   p_kst 7.142857e-06   p_cons 8.321429e-01   p_joint 2.714286e-04

Joint ci ratio: 6.197217e-01	ci left: 1.848917e-04	ci right 3.554116e-04	k: 39	n:150000
Cons ci ratio: 3.472106e-03	ci left: 8.931492e-01	ci right 8.962622e-01	k: 134207	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
APC   150000 perm   163 sec   (919 perm/sec)   p_kst 6.666667e-06   p_cons 8.947133e-01   p_joint 2.600000e-04

Joint ci ratio: 6.121208e-01	ci left: 1.786095e-04	ci right 3.404137e-04	k: 40	n:160000
Cons ci ratio: 3.359298e-03	ci left: 8.933430e-01	ci right 8.963552e-01	k: 143177	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
APC   160000 perm   175 sec   (916 perm/sec)   p_kst 6.250000e-06   p_cons 8.948563e-01   p_joint 2.500000e-04

Joint ci ratio: 6.276285e-01	ci left: 1.581874e-04	ci right 3.067988e-04	k: 38	n:170000
Cons ci ratio: 3.258542e-03	ci left: 8.934147e-01	ci right 8.963365e-01	k: 152130	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
APC   170000 perm   186 sec   (915 perm/sec)   p_kst 5.882353e-06   p_cons 8.948824e-01   p_joint 2.235294e-04

Joint ci ratio: 6.276326e-01	ci left: 1.493990e-04	ci right 2.897551e-04	k: 38	n:180000
Cons ci ratio: 3.169145e-03	ci left: 8.933120e-01	ci right 8.961530e-01	k: 161053	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
APC   180000 perm   197 sec   (912 perm/sec)   p_kst 5.555556e-06   p_cons 8.947389e-01   p_joint 2.111111e-04

Joint ci ratio: 6.121335e-01	ci left: 1.504072e-04	ci right 2.866662e-04	k: 40	n:190000
Cons ci ratio: 3.083358e-03	ci left: 8.934277e-01	ci right 8.961919e-01	k: 170015	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
APC   190000 perm   209 sec   (910 perm/sec)   p_kst 5.263158e-06   p_cons 8.948158e-01   p_joint 2.105263e-04

Joint ci ratio: 6.358460e-01	ci left: 1.302603e-04	ci right 2.549892e-04	k: 37	n:200000
Cons ci ratio: 3.003140e-03	ci left: 8.935980e-01	ci right 8.962906e-01	k: 178990	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
APC   200000 perm   221 sec   (906 perm/sec)   p_kst 5.000000e-06   p_cons 8.949500e-01   p_joint 1.850000e-04

Joint ci ratio: 7.039991e-01	ci left: 9.638712e-05	ci right 2.039312e-04	k: 30	n:210000
Cons ci ratio: 2.933471e-03	ci left: 8.934560e-01	ci right 8.960855e-01	k: 187903	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
APC   210000 perm   233 sec   (903 perm/sec)   p_kst 4.761905e-06   p_cons 8.947762e-01   p_joint 1.428571e-04

Joint ci ratio: 7.040016e-01	ci left: 9.200580e-05	ci right 1.946619e-04	k: 30	n:220000
Cons ci ratio: 2.865593e-03	ci left: 8.935150e-01	ci right 8.960836e-01	k: 196857	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
APC   220000 perm   244 sec   (900 perm/sec)   p_kst 4.545455e-06   p_cons 8.948045e-01   p_joint 1.363636e-04

Joint ci ratio: 7.040038e-01	ci left: 8.800548e-05	ci right 1.861986e-04	k: 30	n:230000
Cons ci ratio: 2.803448e-03	ci left: 8.934865e-01	ci right 8.959992e-01	k: 205792	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
APC   230000 perm   256 sec   (899 perm/sec)   p_kst 4.347826e-06   p_cons 8.947478e-01   p_joint 1.304348e-04

Joint ci ratio: 7.040058e-01	ci left: 8.433851e-05	ci right 1.784405e-04	k: 30	n:240000
Cons ci ratio: 2.744024e-03	ci left: 8.935405e-01	ci right 8.959999e-01	k: 214746	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
APC   240000 perm   268 sec   (895 perm/sec)   p_kst 4.166667e-06   p_cons 8.947750e-01   p_joint 1.250000e-04

Joint ci ratio: 6.929189e-01	ci left: 8.425349e-05	ci right 1.760035e-04	k: 31	n:250000
Cons ci ratio: 2.690052e-03	ci left: 8.934621e-01	ci right 8.958727e-01	k: 223668	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
APC   250000 perm   280 sec   (894 perm/sec)   p_kst 4.000000e-06   p_cons 8.946720e-01   p_joint 1.240000e-04

Joint ci ratio: 6.929207e-01	ci left: 8.101292e-05	ci right 1.692343e-04	k: 31	n:260000
Cons ci ratio: 2.637905e-03	ci left: 8.934791e-01	ci right 8.958429e-01	k: 232613	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
APC   260000 perm   292 sec   (890 perm/sec)   p_kst 3.846154e-06   p_cons 8.946654e-01   p_joint 1.192308e-04

Joint ci ratio: 6.823414e-01	ci left: 8.106795e-05	ci right 1.673087e-04	k: 32	n:270000
Cons ci ratio: 2.591474e-03	ci left: 8.932905e-01	ci right 8.956121e-01	k: 241503	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
APC   270000 perm   304 sec   (888 perm/sec)   p_kst 3.703704e-06   p_cons 8.944556e-01   p_joint 1.185185e-04

Joint ci ratio: 7.687382e-01	ci left: 5.778181e-05	ci right 1.318005e-04	k: 25	n:280000
Cons ci ratio: 2.544562e-03	ci left: 8.933276e-01	ci right 8.956071e-01	k: 250452	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
APC   280000 perm   316 sec   (885 perm/sec)   p_kst 3.571429e-06   p_cons 8.944714e-01   p_joint 8.928571e-05

Joint ci ratio: 7.543679e-01	ci left: 5.856654e-05	ci right 1.313629e-04	k: 26	n:290000
Cons ci ratio: 2.499835e-03	ci left: 8.933832e-01	ci right 8.956227e-01	k: 259407	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
APC   290000 perm   330 sec   (879 perm/sec)   p_kst 3.448276e-06   p_cons 8.945069e-01   p_joint 8.965517e-05

Joint ci ratio: 8.001333e-01	ci left: 4.860069e-05	ci right 1.150354e-04	k: 23	n:300000
Cons ci ratio: 2.456648e-03	ci left: 8.934924e-01	ci right 8.956933e-01	k: 268379	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
APC   300000 perm   342 sec   (877 perm/sec)   p_kst 3.333333e-06   p_cons 8.945967e-01   p_joint 7.666667e-05

Joint ci ratio: 8.001344e-01	ci left: 4.703291e-05	ci right 1.113247e-04	k: 23	n:310000
Cons ci ratio: 2.417979e-03	ci left: 8.934101e-01	ci right 8.955761e-01	k: 277294	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
APC   310000 perm   354 sec   (875 perm/sec)   p_kst 3.225806e-06   p_cons 8.944968e-01   p_joint 7.419355e-05

Joint ci ratio: 7.839681e-01	ci left: 4.805449e-05	ci right 1.115920e-04	k: 24	n:320000
Cons ci ratio: 2.378438e-03	ci left: 8.935435e-01	ci right 8.956743e-01	k: 286276	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
APC   320000 perm   368 sec   (870 perm/sec)   p_kst 3.125000e-06   p_cons 8.946125e-01   p_joint 7.500000e-05

Joint ci ratio: 7.839691e-01	ci left: 4.659827e-05	ci right 1.082105e-04	k: 24	n:330000
Cons ci ratio: 2.341601e-03	ci left: 8.936021e-01	ci right 8.957000e-01	k: 295236	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
APC   330000 perm   380 sec   (869 perm/sec)   p_kst 3.030303e-06   p_cons 8.946545e-01   p_joint 7.272727e-05

Joint ci ratio: 7.687447e-01	ci left: 4.758491e-05	ci right 1.085420e-04	k: 25	n:340000
Cons ci ratio: 2.308475e-03	ci left: 8.934892e-01	ci right 8.955570e-01	k: 304139	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
APC   340000 perm   393 sec   (865 perm/sec)   p_kst 2.941176e-06   p_cons 8.945265e-01   p_joint 7.352941e-05

Joint ci ratio: 7.156591e-01	ci left: 5.549141e-05	ci right 1.189945e-04	k: 29	n:350000
Cons ci ratio: 2.276403e-03	ci left: 8.934087e-01	ci right 8.954476e-01	k: 313051	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
APC   350000 perm   406 sec   (862 perm/sec)   p_kst 2.857143e-06   p_cons 8.944314e-01   p_joint 8.285714e-05

Joint ci ratio: 7.156600e-01	ci left: 5.394996e-05	ci right 1.156892e-04	k: 29	n:360000
Cons ci ratio: 2.244078e-03	ci left: 8.934640e-01	ci right 8.954740e-01	k: 322010	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
APC   360000 perm   419 sec   (859 perm/sec)   p_kst 2.777778e-06   p_cons 8.944722e-01   p_joint 8.055556e-05

Joint ci ratio: 7.156608e-01	ci left: 5.249184e-05	ci right 1.125625e-04	k: 29	n:370000
Cons ci ratio: 2.212585e-03	ci left: 8.935600e-01	ci right 8.955419e-01	k: 330985	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
APC   370000 perm   432 sec   (857 perm/sec)   p_kst 2.702703e-06   p_cons 8.945541e-01   p_joint 7.837838e-05

Joint ci ratio: 7.407821e-01	ci left: 4.682464e-05	ci right 1.033762e-04	k: 27	n:380000
Cons ci ratio: 2.183507e-03	ci left: 8.935533e-01	ci right 8.955091e-01	k: 339923	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
APC   380000 perm   444 sec   (856 perm/sec)   p_kst 2.631579e-06   p_cons 8.945342e-01   p_joint 7.105263e-05

Joint ci ratio: 7.040239e-01	ci left: 5.190026e-05	ci right 1.098107e-04	k: 30	n:390000
Cons ci ratio: 2.154463e-03	ci left: 8.936424e-01	ci right 8.955723e-01	k: 348898	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
APC   390000 perm   457 sec   (853 perm/sec)   p_kst 2.564103e-06   p_cons 8.946103e-01   p_joint 7.692308e-05

Joint ci ratio: 6.929361e-01	ci left: 5.265808e-05	ci right 1.100033e-04	k: 31	n:400000
Cons ci ratio: 2.127308e-03	ci left: 8.936594e-01	ci right 8.955649e-01	k: 357846	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
APC   400000 perm   470 sec   (851 perm/sec)   p_kst 2.500000e-06   p_cons 8.946150e-01   p_joint 7.750000e-05

Joint ci ratio: 6.823561e-01	ci left: 5.338590e-05	ci right 1.101798e-04	k: 32	n:410000
Cons ci ratio: 2.102893e-03	ci left: 8.935189e-01	ci right 8.954023e-01	k: 366730	n:410000
KS ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
APC   410000 perm   484 sec   (847 perm/sec)   p_kst 2.439024e-06   p_cons 8.944634e-01   p_joint 7.804878e-05

Joint ci ratio: 6.722464e-01	ci left: 5.408555e-05	ci right 1.103417e-04	k: 33	n:420000
Cons ci ratio: 2.077148e-03	ci left: 8.935814e-01	ci right 8.954417e-01	k: 375696	n:420000
KS ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
APC   420000 perm   497 sec   (846 perm/sec)   p_kst 2.380952e-06   p_cons 8.945143e-01   p_joint 7.857143e-05

Joint ci ratio: 6.533052e-01	ci left: 5.669548e-05	ci right 1.131994e-04	k: 35	n:430000
Cons ci ratio: 2.051869e-03	ci left: 8.936830e-01	ci right 8.955209e-01	k: 384680	n:430000
KS ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
APC   430000 perm   510 sec   (843 perm/sec)   p_kst 2.325581e-06   p_cons 8.946047e-01   p_joint 8.139535e-05

Joint ci ratio: 6.358798e-01	ci left: 5.920843e-05	ci right 1.159064e-04	k: 37	n:440000
Cons ci ratio: 2.027539e-03	ci left: 8.937756e-01	ci right 8.955919e-01	k: 393662	n:440000
KS ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
APC   440000 perm   524 sec   (840 perm/sec)   p_kst 2.272727e-06   p_cons 8.946864e-01   p_joint 8.409091e-05

Joint ci ratio: 5.103065e-01	ci left: 9.787215e-05	ci right 1.666156e-04	k: 58	n:450000
Cons ci ratio: 2.366676e-03	ci left: 8.580667e-01	ci right 8.601020e-01	k: 386589	n:450000
KS ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
APC   450000 perm   537 sec   (838 perm/sec)   p_kst 2.222222e-06   p_cons 8.590867e-01   p_joint 1.288889e-04

Joint ci ratio: 5.018707e-01	ci left: 9.953691e-05	ci right 1.678923e-04	k: 60	n:460000
Cons ci ratio: 2.339777e-03	ci left: 8.581850e-01	ci right 8.601974e-01	k: 395229	n:460000
KS ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
APC   460000 perm   552 sec   (833 perm/sec)   p_kst 2.173913e-06   p_cons 8.591935e-01   p_joint 1.304348e-04

Joint ci ratio: 5.146889e-01	ci left: 9.185496e-05	ci right 1.571251e-04	k: 57	n:470000
Cons ci ratio: 2.314893e-03	ci left: 8.581810e-01	ci right 8.601720e-01	k: 403814	n:470000
KS ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
APC   470000 perm   568 sec   (828 perm/sec)   p_kst 2.127660e-06   p_cons 8.591787e-01   p_joint 1.212766e-04

Joint ci ratio: 5.103086e-01	ci left: 9.175505e-05	ci right 1.562023e-04	k: 58	n:480000
Cons ci ratio: 2.289977e-03	ci left: 8.582630e-01	ci right 8.602327e-01	k: 412440	n:480000
KS ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
APC   480000 perm   582 sec   (825 perm/sec)   p_kst 2.083333e-06   p_cons 8.592500e-01   p_joint 1.208333e-04

Joint ci ratio: 5.191860e-01	ci left: 8.633132e-05	ci right 1.484070e-04	k: 56	n:490000
Cons ci ratio: 2.266652e-03	ci left: 8.582557e-01	ci right 8.602053e-01	k: 421024	n:490000
KS ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
APC   490000 perm   596 sec   (822 perm/sec)   p_kst 2.040816e-06   p_cons 8.592327e-01   p_joint 1.142857e-04

Joint ci ratio: 5.060390e-01	ci left: 8.982824e-05	ci right 1.522088e-04	k: 59	n:500000
Cons ci ratio: 2.242987e-03	ci left: 8.583612e-01	ci right 8.602906e-01	k: 429664	n:500000
KS ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
APC   500000 perm   610 sec   (820 perm/sec)   p_kst 2.000000e-06   p_cons 8.593280e-01   p_joint 1.180000e-04

Joint ci ratio: 4.978097e-01	ci left: 9.149172e-05	ci right 1.536387e-04	k: 61	n:510000
Cons ci ratio: 2.220839e-03	ci left: 8.583761e-01	ci right 8.602865e-01	k: 438260	n:510000
KS ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
APC   510000 perm   624 sec   (818 perm/sec)   p_kst 1.960784e-06   p_cons 8.593333e-01   p_joint 1.196078e-04

Joint ci ratio: 4.938432e-01	ci left: 9.141473e-05	ci right 1.528459e-04	k: 62	n:520000
Cons ci ratio: 2.199439e-03	ci left: 8.583790e-01	ci right 8.602709e-01	k: 446850	n:520000
KS ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
APC   520000 perm   638 sec   (816 perm/sec)   p_kst 1.923077e-06   p_cons 8.593269e-01   p_joint 1.192308e-04

Joint ci ratio: 4.978109e-01	ci left: 8.803916e-05	ci right 1.478411e-04	k: 61	n:530000
Cons ci ratio: 2.178697e-03	ci left: 8.583761e-01	ci right 8.602501e-01	k: 455437	n:530000
KS ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
APC   530000 perm   651 sec   (814 perm/sec)   p_kst 1.886792e-06   p_cons 8.593151e-01   p_joint 1.150943e-04

Joint ci ratio: 4.899705e-01	ci left: 8.965100e-05	ci right 1.492649e-04	k: 63	n:540000
Cons ci ratio: 2.159226e-03	ci left: 8.582955e-01	ci right 8.601525e-01	k: 463982	n:540000
KS ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
APC   540000 perm   665 sec   (812 perm/sec)   p_kst 1.851852e-06   p_cons 8.592259e-01   p_joint 1.166667e-04

Joint ci ratio: 4.861870e-01	ci left: 8.961530e-05	ci right 1.485914e-04	k: 64	n:550000
Cons ci ratio: 2.140941e-03	ci left: 8.581413e-01	ci right 8.599822e-01	k: 472485	n:550000
KS ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
APC   550000 perm   680 sec   (808 perm/sec)   p_kst 1.818182e-06   p_cons 8.590636e-01   p_joint 1.163636e-04

Joint ci ratio: 4.861875e-01	ci left: 8.801500e-05	ci right 1.459380e-04	k: 64	n:560000
Cons ci ratio: 2.122234e-03	ci left: 8.580929e-01	ci right 8.599177e-01	k: 481044	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
APC   560000 perm   695 sec   (805 perm/sec)   p_kst 1.785714e-06   p_cons 8.590071e-01   p_joint 1.142857e-04

Joint ci ratio: 4.861880e-01	ci left: 8.647086e-05	ci right 1.433777e-04	k: 64	n:570000
Cons ci ratio: 2.104542e-03	ci left: 8.579848e-01	ci right 8.597940e-01	k: 489568	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
APC   570000 perm   710 sec   (803 perm/sec)   p_kst 1.754386e-06   p_cons 8.588912e-01   p_joint 1.122807e-04

Joint ci ratio: 4.824908e-01	ci left: 8.649349e-05	ci right 1.428389e-04	k: 65	n:580000
Cons ci ratio: 2.086883e-03	ci left: 8.579271e-01	ci right 8.597210e-01	k: 498119	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
APC   580000 perm   724 sec   (801 perm/sec)   p_kst 1.724138e-06   p_cons 8.588259e-01   p_joint 1.120690e-04

Joint ci ratio: 4.824912e-01	ci left: 8.502748e-05	ci right 1.404179e-04	k: 65	n:590000
Cons ci ratio: 2.068562e-03	ci left: 8.580006e-01	ci right 8.597789e-01	k: 506746	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
APC   590000 perm   739 sec   (798 perm/sec)   p_kst 1.694915e-06   p_cons 8.588915e-01   p_joint 1.101695e-04

Joint ci ratio: 4.899735e-01	ci left: 8.068580e-05	ci right 1.343386e-04	k: 63	n:600000
Cons ci ratio: 2.051307e-03	ci left: 8.580015e-01	ci right 8.597650e-01	k: 515331	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
APC   600000 perm   754 sec   (796 perm/sec)   p_kst 1.666667e-06   p_cons 8.588850e-01   p_joint 1.050000e-04

Joint ci ratio: 4.861899e-01	ci left: 8.080058e-05	ci right 1.339760e-04	k: 64	n:610000
Cons ci ratio: 2.033692e-03	ci left: 8.580962e-01	ci right 8.598447e-01	k: 523973	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
APC   610000 perm   768 sec   (794 perm/sec)   p_kst 1.639344e-06   p_cons 8.589721e-01   p_joint 1.049180e-04

Joint ci ratio: 4.861903e-01	ci left: 7.949733e-05	ci right 1.318152e-04	k: 64	n:620000
Cons ci ratio: 2.017033e-03	ci left: 8.581264e-01	ci right 8.598606e-01	k: 532577	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
APC   620000 perm   783 sec   (792 perm/sec)   p_kst 1.612903e-06   p_cons 8.589952e-01   p_joint 1.032258e-04

Joint ci ratio: 4.788784e-01	ci left: 8.102375e-05	ci right 1.332809e-04	k: 66	n:630000
Cons ci ratio: 2.001182e-03	ci left: 8.581064e-01	ci right 8.598269e-01	k: 541150	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
APC   630000 perm   798 sec   (790 perm/sec)   p_kst 1.587302e-06   p_cons 8.589683e-01   p_joint 1.047619e-04

Joint ci ratio: 4.753442e-01	ci left: 8.113227e-05	ci right 1.329475e-04	k: 67	n:640000
Cons ci ratio: 1.985611e-03	ci left: 8.580980e-01	ci right 8.598050e-01	k: 549730	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
APC   640000 perm   812 sec   (788 perm/sec)   p_kst 1.562500e-06   p_cons 8.589531e-01   p_joint 1.046875e-04

Joint ci ratio: 4.824938e-01	ci left: 7.717871e-05	ci right 1.274565e-04	k: 65	n:650000
Cons ci ratio: 1.970159e-03	ci left: 8.581192e-01	ci right 8.598130e-01	k: 558329	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
APC   650000 perm   827 sec   (786 perm/sec)   p_kst 1.538462e-06   p_cons 8.589677e-01   p_joint 1.000000e-04

Joint ci ratio: 4.753450e-01	ci left: 7.867369e-05	ci right 1.289189e-04	k: 67	n:660000
Cons ci ratio: 1.955075e-03	ci left: 8.581383e-01	ci right 8.598192e-01	k: 566927	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
APC   660000 perm   842 sec   (784 perm/sec)   p_kst 1.515152e-06   p_cons 8.589803e-01   p_joint 1.015152e-04

Joint ci ratio: 5.060468e-01	ci left: 6.703578e-05	ci right 1.135891e-04	k: 59	n:670000
Cons ci ratio: 1.941133e-03	ci left: 8.580566e-01	ci right 8.597253e-01	k: 575458	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
APC   670000 perm   858 sec   (781 perm/sec)   p_kst 1.492537e-06   p_cons 8.588925e-01   p_joint 8.805970e-05

Joint ci ratio: 5.060471e-01	ci left: 6.604995e-05	ci right 1.119187e-04	k: 59	n:680000
Cons ci ratio: 1.926911e-03	ci left: 8.580497e-01	ci right 8.597061e-01	k: 584038	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
APC   680000 perm   874 sec   (778 perm/sec)   p_kst 1.470588e-06   p_cons 8.588794e-01   p_joint 8.676471e-05

Joint ci ratio: 5.018820e-01	ci left: 6.635762e-05	ci right 1.119289e-04	k: 60	n:690000
Cons ci ratio: 1.913340e-03	ci left: 8.579994e-01	ci right 8.596440e-01	k: 592588	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
APC   690000 perm   889 sec   (776 perm/sec)   p_kst 1.449275e-06   p_cons 8.588232e-01   p_joint 8.695652e-05

Joint ci ratio: 5.060478e-01	ci left: 6.416279e-05	ci right 1.087211e-04	k: 59	n:700000
Cons ci ratio: 1.899213e-03	ci left: 8.580579e-01	ci right 8.596905e-01	k: 601213	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
APC   700000 perm   906 sec   (772 perm/sec)   p_kst 1.428571e-06   p_cons 8.588757e-01   p_joint 8.428571e-05

Joint ci ratio: 5.146998e-01	ci left: 6.080512e-05	ci right 1.040130e-04	k: 57	n:710000
Cons ci ratio: 1.885624e-03	ci left: 8.580853e-01	ci right 8.597062e-01	k: 609817	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
APC   710000 perm   922 sec   (770 perm/sec)   p_kst 1.408451e-06   p_cons 8.588972e-01   p_joint 8.028169e-05

Joint ci ratio: 5.060484e-01	ci left: 6.238047e-05	ci right 1.057011e-04	k: 59	n:720000
Cons ci ratio: 1.872665e-03	ci left: 8.580673e-01	ci right 8.596770e-01	k: 618389	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
APC   720000 perm   939 sec   (767 perm/sec)   p_kst 1.388889e-06   p_cons 8.588736e-01   p_joint 8.194444e-05

Joint ci ratio: 5.060487e-01	ci left: 6.152594e-05	ci right 1.042532e-04	k: 59	n:730000
Cons ci ratio: 1.859046e-03	ci left: 8.581707e-01	ci right 8.597689e-01	k: 627049	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
APC   730000 perm   956 sec   (764 perm/sec)   p_kst 1.369863e-06   p_cons 8.589712e-01   p_joint 8.082192e-05

Joint ci ratio: 4.978193e-01	ci left: 6.305485e-05	ci right 1.058867e-04	k: 61	n:740000
Cons ci ratio: 1.846315e-03	ci left: 8.581928e-01	ci right 8.597801e-01	k: 635651	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
APC   740000 perm   972 sec   (761 perm/sec)   p_kst 1.351351e-06   p_cons 8.589878e-01   p_joint 8.243243e-05

Joint ci ratio: 4.899788e-01	ci left: 6.454849e-05	ci right 1.074712e-04	k: 63	n:750000
Cons ci ratio: 1.833994e-03	ci left: 8.581943e-01	ci right 8.597709e-01	k: 644238	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
APC   750000 perm   987 sec   (760 perm/sec)   p_kst 1.333333e-06   p_cons 8.589840e-01   p_joint 8.400000e-05

Joint ci ratio: 5.103204e-01	ci left: 5.795027e-05	ci right 9.865475e-05	k: 58	n:760000
Cons ci ratio: 1.821540e-03	ci left: 8.582459e-01	ci right 8.598119e-01	k: 652863	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
APC   760000 perm   1003 sec   (758 perm/sec)   p_kst 1.315789e-06   p_cons 8.590303e-01   p_joint 7.631579e-05

Joint ci ratio: 5.147015e-01	ci left: 5.606702e-05	ci right 9.590819e-05	k: 57	n:770000
Cons ci ratio: 1.810152e-03	ci left: 8.581868e-01	ci right 8.597429e-01	k: 661404	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
APC   770000 perm   1020 sec   (755 perm/sec)   p_kst 1.298701e-06   p_cons 8.589662e-01   p_joint 7.402597e-05

Joint ci ratio: 5.018846e-01	ci left: 5.870091e-05	ci right 9.901415e-05	k: 60	n:780000
Cons ci ratio: 1.798727e-03	ci left: 8.581627e-01	ci right 8.597090e-01	k: 669971	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
APC   780000 perm   1038 sec   (752 perm/sec)   p_kst 1.282051e-06   p_cons 8.589372e-01   p_joint 7.692308e-05

Joint ci ratio: 6.197903e-01	ci left: 3.510505e-05	ci right 6.748582e-05	k: 39	n:790000
Cons ci ratio: 1.990374e-03	ci left: 8.299650e-01	ci right 8.316199e-01	k: 656327	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
APC   790000 perm   1054 sec   (750 perm/sec)   p_kst 1.265823e-06   p_cons 8.307937e-01   p_joint 4.936709e-05

Joint ci ratio: 6.197905e-01	ci left: 3.466624e-05	ci right 6.664226e-05	k: 39	n:800000
Cons ci ratio: 1.977578e-03	ci left: 8.300154e-01	ci right 8.316597e-01	k: 664671	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
APC   800000 perm   1070 sec   (748 perm/sec)   p_kst 1.250000e-06   p_cons 8.308387e-01   p_joint 4.875000e-05

Joint ci ratio: 6.197907e-01	ci left: 3.423826e-05	ci right 6.581952e-05	k: 39	n:810000
Cons ci ratio: 1.964930e-03	ci left: 8.300782e-01	ci right 8.317120e-01	k: 673026	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
APC   810000 perm   1086 sec   (746 perm/sec)   p_kst 1.234568e-06   p_cons 8.308963e-01   p_joint 4.814815e-05

Joint ci ratio: 6.197909e-01	ci left: 3.382071e-05	ci right 6.501685e-05	k: 39	n:820000
Cons ci ratio: 1.953488e-03	ci left: 8.300002e-01	ci right 8.316243e-01	k: 681267	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
APC   820000 perm   1103 sec   (744 perm/sec)   p_kst 1.219512e-06   p_cons 8.308134e-01   p_joint 4.756098e-05

Joint ci ratio: 6.197911e-01	ci left: 3.341323e-05	ci right 6.423352e-05	k: 39	n:830000
Cons ci ratio: 1.941486e-03	ci left: 8.300339e-01	ci right 8.316481e-01	k: 689599	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
APC   830000 perm   1120 sec   (741 perm/sec)   p_kst 1.204819e-06   p_cons 8.308422e-01   p_joint 4.698795e-05

Joint ci ratio: 6.197913e-01	ci left: 3.301545e-05	ci right 6.346884e-05	k: 39	n:840000
Cons ci ratio: 1.929996e-03	ci left: 8.300239e-01	ci right 8.316286e-01	k: 697895	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
APC   840000 perm   1138 sec   (738 perm/sec)   p_kst 1.190476e-06   p_cons 8.308274e-01   p_joint 4.642857e-05

Joint ci ratio: 6.197915e-01	ci left: 3.262704e-05	ci right 6.272216e-05	k: 39	n:850000
Cons ci ratio: 1.918227e-03	ci left: 8.300849e-01	ci right 8.316799e-01	k: 706251	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
APC   850000 perm   1156 sec   (736 perm/sec)   p_kst 1.176471e-06   p_cons 8.308835e-01   p_joint 4.588235e-05

Joint ci ratio: 6.121862e-01	ci left: 3.322879e-05	ci right 6.333510e-05	k: 40	n:860000
Cons ci ratio: 1.907466e-03	ci left: 8.300269e-01	ci right 8.316128e-01	k: 714506	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
APC   860000 perm   1172 sec   (734 perm/sec)   p_kst 1.162791e-06   p_cons 8.308209e-01   p_joint 4.651163e-05

Joint ci ratio: 5.977793e-01	ci left: 3.479321e-05	ci right 6.525439e-05	k: 42	n:870000
Cons ci ratio: 1.896419e-03	ci left: 8.300393e-01	ci right 8.316160e-01	k: 722821	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
APC   870000 perm   1189 sec   (731 perm/sec)   p_kst 1.149425e-06   p_cons 8.308287e-01   p_joint 4.827586e-05

Joint ci ratio: 5.977795e-01	ci left: 3.439783e-05	ci right 6.451287e-05	k: 42	n:880000
Cons ci ratio: 1.885799e-03	ci left: 8.300161e-01	ci right 8.315840e-01	k: 731105	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
APC   880000 perm   1206 sec   (730 perm/sec)   p_kst 1.136364e-06   p_cons 8.308011e-01   p_joint 4.772727e-05

Joint ci ratio: 5.977796e-01	ci left: 3.401134e-05	ci right 6.378801e-05	k: 42	n:890000
Cons ci ratio: 1.874710e-03	ci left: 8.300903e-01	ci right 8.316491e-01	k: 739475	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
APC   890000 perm   1222 sec   (728 perm/sec)   p_kst 1.123596e-06   p_cons 8.308708e-01   p_joint 4.719101e-05

Joint ci ratio: 5.977798e-01	ci left: 3.363343e-05	ci right 6.307926e-05	k: 42	n:900000
Cons ci ratio: 1.864020e-03	ci left: 8.301318e-01	ci right 8.316817e-01	k: 747817	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
APC   900000 perm   1239 sec   (726 perm/sec)   p_kst 1.111111e-06   p_cons 8.309078e-01   p_joint 4.666667e-05

Joint ci ratio: 5.909476e-01	ci left: 3.419725e-05	ci right 6.364862e-05	k: 43	n:910000
Cons ci ratio: 1.853649e-03	ci left: 8.301514e-01	ci right 8.316927e-01	k: 756140	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
APC   910000 perm   1255 sec   (725 perm/sec)   p_kst 1.098901e-06   p_cons 8.309231e-01   p_joint 4.725275e-05

Joint ci ratio: 5.909478e-01	ci left: 3.382554e-05	ci right 6.295679e-05	k: 43	n:920000
Cons ci ratio: 1.843442e-03	ci left: 8.301717e-01	ci right 8.317045e-01	k: 764464	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
APC   920000 perm   1272 sec   (723 perm/sec)   p_kst 1.086957e-06   p_cons 8.309391e-01   p_joint 4.673913e-05

Joint ci ratio: 5.843446e-01	ci left: 3.437705e-05	ci right 6.351341e-05	k: 44	n:930000
Cons ci ratio: 1.833711e-03	ci left: 8.301442e-01	ci right 8.316688e-01	k: 772744	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
APC   930000 perm   1289 sec   (722 perm/sec)   p_kst 1.075269e-06   p_cons 8.309075e-01   p_joint 4.731183e-05

Joint ci ratio: 5.843448e-01	ci left: 3.401134e-05	ci right 6.283774e-05	k: 44	n:940000
Cons ci ratio: 1.823696e-03	ci left: 8.301844e-01	ci right 8.317008e-01	k: 781087	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
APC   940000 perm   1306 sec   (720 perm/sec)   p_kst 1.063830e-06   p_cons 8.309436e-01   p_joint 4.680851e-05

Joint ci ratio: 5.779582e-01	ci left: 3.455105e-05	ci right 6.338217e-05	k: 45	n:950000
Cons ci ratio: 1.813783e-03	ci left: 8.302333e-01	ci right 8.317415e-01	k: 789439	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
APC   950000 perm   1322 sec   (719 perm/sec)   p_kst 1.052632e-06   p_cons 8.309884e-01   p_joint 4.736842e-05

Joint ci ratio: 5.779583e-01	ci left: 3.419115e-05	ci right 6.272194e-05	k: 45	n:960000
Cons ci ratio: 1.804779e-03	ci left: 8.301643e-01	ci right 8.316649e-01	k: 797679	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
APC   960000 perm   1339 sec   (717 perm/sec)   p_kst 1.041667e-06   p_cons 8.309156e-01   p_joint 4.687500e-05

Joint ci ratio: 5.717766e-01	ci left: 3.471956e-05	ci right 6.325471e-05	k: 46	n:970000
Cons ci ratio: 1.795684e-03	ci left: 8.301319e-01	ci right 8.316249e-01	k: 805953	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
APC   970000 perm   1356 sec   (715 perm/sec)   p_kst 1.030928e-06   p_cons 8.308794e-01   p_joint 4.742268e-05

Joint ci ratio: 5.717768e-01	ci left: 3.436528e-05	ci right 6.260926e-05	k: 46	n:980000
Cons ci ratio: 1.786335e-03	ci left: 8.301615e-01	ci right 8.316468e-01	k: 814287	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
APC   980000 perm   1373 sec   (714 perm/sec)   p_kst 1.020408e-06   p_cons 8.309051e-01   p_joint 4.693878e-05

Joint ci ratio: 5.657893e-01	ci left: 3.488286e-05	ci right 6.313086e-05	k: 47	n:990000
Cons ci ratio: 1.776786e-03	ci left: 8.302451e-01	ci right 8.317226e-01	k: 822675	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
APC   990000 perm   1390 sec   (712 perm/sec)   p_kst 1.010101e-06   p_cons 8.309848e-01   p_joint 4.747475e-05

Joint ci ratio: 5.657894e-01	ci left: 3.453403e-05	ci right 6.249955e-05	k: 47	n:1000000
Cons ci ratio: 1.767898e-03	ci left: 8.302460e-01	ci right 8.317161e-01	k: 830982	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
APC   1000000 perm   1408 sec   (710 perm/sec)   p_kst 1.000000e-06   p_cons 8.309820e-01   p_joint 4.700000e-05

Joint ci ratio: 5.657895e-01	ci left: 3.419211e-05	ci right 6.188075e-05	k: 47	n:1010000
Cons ci ratio: 1.758757e-03	ci left: 8.303084e-01	ci right 8.317709e-01	k: 839351	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
APC   1010000 perm   1425 sec   (709 perm/sec)   p_kst 9.900990e-07   p_cons 8.310406e-01   p_joint 4.653465e-05

Joint ci ratio: 5.599863e-01	ci left: 3.469766e-05	ci right 6.239269e-05	k: 48	n:1020000
Cons ci ratio: 1.750428e-03	ci left: 8.302615e-01	ci right 8.317170e-01	k: 847610	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
APC   1020000 perm   1442 sec   (707 perm/sec)   p_kst 9.803922e-07   p_cons 8.309902e-01   p_joint 4.705882e-05

Joint ci ratio: 5.599864e-01	ci left: 3.436079e-05	ci right 6.178694e-05	k: 48	n:1030000
Cons ci ratio: 1.741585e-03	ci left: 8.303177e-01	ci right 8.317659e-01	k: 855974	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
APC   1030000 perm   1460 sec   (706 perm/sec)   p_kst 9.708738e-07   p_cons 8.310427e-01   p_joint 4.660194e-05

Joint ci ratio: 5.599865e-01	ci left: 3.403039e-05	ci right 6.119284e-05	k: 48	n:1040000
Cons ci ratio: 1.733342e-03	ci left: 8.302967e-01	ci right 8.317380e-01	k: 864259	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
APC   1040000 perm   1477 sec   (704 perm/sec)   p_kst 9.615385e-07   p_cons 8.310183e-01   p_joint 4.615385e-05

Joint ci ratio: 5.543583e-01	ci left: 3.452445e-05	ci right 6.169534e-05	k: 49	n:1050000
Cons ci ratio: 1.724882e-03	ci left: 8.303305e-01	ci right 8.317649e-01	k: 872601	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
APC   1050000 perm   1495 sec   (702 perm/sec)   p_kst 9.523810e-07   p_cons 8.310486e-01   p_joint 4.666667e-05

Joint ci ratio: 5.543584e-01	ci left: 3.419875e-05	ci right 6.111332e-05	k: 49	n:1060000
Cons ci ratio: 1.716609e-03	ci left: 8.303533e-01	ci right 8.317808e-01	k: 880932	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
APC   1060000 perm   1512 sec   (701 perm/sec)   p_kst 9.433962e-07   p_cons 8.310679e-01   p_joint 4.622642e-05

Joint ci ratio: 5.488965e-01	ci left: 3.468334e-05	ci right 6.160587e-05	k: 50	n:1070000
Cons ci ratio: 1.708544e-03	ci left: 8.303607e-01	ci right 8.317815e-01	k: 889247	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
APC   1070000 perm   1530 sec   (700 perm/sec)   p_kst 9.345794e-07   p_cons 8.310720e-01   p_joint 4.672897e-05

Joint ci ratio: 5.909499e-01	ci left: 2.881432e-05	ci right 5.362992e-05	k: 43	n:1080000
Cons ci ratio: 1.700277e-03	ci left: 8.304199e-01	ci right 8.318339e-01	k: 897618	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
APC   1080000 perm   1547 sec   (698 perm/sec)   p_kst 9.259259e-07   p_cons 8.311278e-01   p_joint 3.981481e-05

Joint ci ratio: 5.843468e-01	ci left: 2.933085e-05	ci right 5.419040e-05	k: 44	n:1090000
Cons ci ratio: 1.692373e-03	ci left: 8.304376e-01	ci right 8.318451e-01	k: 905945	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
APC   1090000 perm   1564 sec   (697 perm/sec)   p_kst 9.174312e-07   p_cons 8.311422e-01   p_joint 4.036697e-05

Joint ci ratio: 5.843469e-01	ci left: 2.906421e-05	ci right 5.369777e-05	k: 44	n:1100000
Cons ci ratio: 1.684976e-03	ci left: 8.303885e-01	ci right 8.317898e-01	k: 914199	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
APC   1100000 perm   1582 sec   (695 perm/sec)   p_kst 9.090909e-07   p_cons 8.310900e-01   p_joint 4.000000e-05

Joint ci ratio: 5.717784e-01	ci left: 3.034050e-05	ci right 5.527669e-05	k: 46	n:1110000
Cons ci ratio: 1.677277e-03	ci left: 8.304071e-01	ci right 8.318020e-01	k: 922527	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
APC   1110000 perm   1601 sec   (693 perm/sec)   p_kst 9.009009e-07   p_cons 8.311054e-01   p_joint 4.144144e-05

Joint ci ratio: 5.717785e-01	ci left: 3.006960e-05	ci right 5.478315e-05	k: 46	n:1120000
Cons ci ratio: 1.669884e-03	ci left: 8.303914e-01	ci right 8.317801e-01	k: 930817	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
APC   1120000 perm   1619 sec   (692 perm/sec)   p_kst 8.928571e-07   p_cons 8.310866e-01   p_joint 4.107143e-05

Joint ci ratio: 5.717786e-01	ci left: 2.980350e-05	ci right 5.429835e-05	k: 46	n:1130000
Cons ci ratio: 1.662300e-03	ci left: 8.304248e-01	ci right 8.318072e-01	k: 939162	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
APC   1130000 perm   1637 sec   (690 perm/sec)   p_kst 8.849558e-07   p_cons 8.311168e-01   p_joint 4.070796e-05

Joint ci ratio: 5.717787e-01	ci left: 2.954206e-05	ci right 5.382205e-05	k: 46	n:1140000
Cons ci ratio: 1.654911e-03	ci left: 8.304417e-01	ci right 8.318180e-01	k: 947489	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
APC   1140000 perm   1655 sec   (689 perm/sec)   p_kst 8.771930e-07   p_cons 8.311307e-01   p_joint 4.035088e-05

Joint ci ratio: 5.657912e-01	ci left: 3.002957e-05	ci right 5.434749e-05	k: 47	n:1150000
Cons ci ratio: 1.647441e-03	ci left: 8.304889e-01	ci right 8.318590e-01	k: 955851	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
APC   1150000 perm   1673 sec   (687 perm/sec)   p_kst 8.695652e-07   p_cons 8.311748e-01   p_joint 4.086957e-05

Joint ci ratio: 5.657913e-01	ci left: 2.977069e-05	ci right 5.387898e-05	k: 47	n:1160000
Cons ci ratio: 1.640359e-03	ci left: 8.304860e-01	ci right 8.318503e-01	k: 964156	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
APC   1160000 perm   1691 sec   (686 perm/sec)   p_kst 8.620690e-07   p_cons 8.311690e-01   p_joint 4.051724e-05

Joint ci ratio: 5.657914e-01	ci left: 2.951624e-05	ci right 5.341848e-05	k: 47	n:1170000
Cons ci ratio: 1.633382e-03	ci left: 8.304806e-01	ci right 8.318391e-01	k: 972458	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
APC   1170000 perm   1709 sec   (685 perm/sec)   p_kst 8.547009e-07   p_cons 8.311607e-01   p_joint 4.017094e-05

Joint ci ratio: 5.599881e-01	ci left: 2.999287e-05	ci right 5.393272e-05	k: 48	n:1180000
Cons ci ratio: 1.626665e-03	ci left: 8.304457e-01	ci right 8.317985e-01	k: 980725	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
APC   1180000 perm   1727 sec   (683 perm/sec)   p_kst 8.474576e-07   p_cons 8.311229e-01   p_joint 4.067797e-05

Joint ci ratio: 5.599882e-01	ci left: 2.974083e-05	ci right 5.347951e-05	k: 48	n:1190000
Cons ci ratio: 1.619875e-03	ci left: 8.304382e-01	ci right 8.317854e-01	k: 989024	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
APC   1190000 perm   1746 sec   (682 perm/sec)   p_kst 8.403361e-07   p_cons 8.311126e-01   p_joint 4.033613e-05

Joint ci ratio: 5.543599e-01	ci left: 3.020887e-05	ci right 5.398348e-05	k: 49	n:1200000
Cons ci ratio: 1.613131e-03	ci left: 8.304376e-01	ci right 8.317791e-01	k: 997331	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
APC   1200000 perm   1764 sec   (680 perm/sec)   p_kst 8.333333e-07   p_cons 8.311092e-01   p_joint 4.083333e-05

Joint ci ratio: 5.488980e-01	ci left: 3.067037e-05	ci right 5.447796e-05	k: 50	n:1210000
Cons ci ratio: 1.606183e-03	ci left: 8.304875e-01	ci right 8.318233e-01	k: 1005699	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
APC   1210000 perm   1783 sec   (679 perm/sec)   p_kst 8.264463e-07   p_cons 8.311562e-01   p_joint 4.132231e-05

Joint ci ratio: 5.488981e-01	ci left: 3.041897e-05	ci right 5.403142e-05	k: 50	n:1220000
Cons ci ratio: 1.599271e-03	ci left: 8.305456e-01	ci right 8.318758e-01	k: 1014078	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
APC   1220000 perm   1801 sec   (677 perm/sec)   p_kst 8.196721e-07   p_cons 8.312115e-01   p_joint 4.098361e-05

Joint ci ratio: 5.488982e-01	ci left: 3.017166e-05	ci right 5.359215e-05	k: 50	n:1230000
Cons ci ratio: 1.592721e-03	ci left: 8.305548e-01	ci right 8.318794e-01	k: 1022398	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
APC   1230000 perm   1820 sec   (676 perm/sec)   p_kst 8.130081e-07   p_cons 8.312179e-01   p_joint 4.065041e-05

Joint ci ratio: 5.488983e-01	ci left: 2.992834e-05	ci right 5.315995e-05	k: 50	n:1240000
Cons ci ratio: 1.586213e-03	ci left: 8.305702e-01	ci right 8.318895e-01	k: 1030726	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
APC   1240000 perm   1840 sec   (674 perm/sec)   p_kst 8.064516e-07   p_cons 8.312306e-01   p_joint 4.032258e-05

Joint ci ratio: 5.435947e-01	ci left: 3.037843e-05	ci right 5.364412e-05	k: 51	n:1250000
Cons ci ratio: 1.579906e-03	ci left: 8.305638e-01	ci right 8.318778e-01	k: 1039027	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
APC   1250000 perm   1858 sec   (673 perm/sec)   p_kst 8.000000e-07   p_cons 8.312216e-01   p_joint 4.080000e-05

Joint ci ratio: 5.435948e-01	ci left: 3.013733e-05	ci right 5.321838e-05	k: 51	n:1260000
Cons ci ratio: 1.573621e-03	ci left: 8.305671e-01	ci right 8.318759e-01	k: 1047340	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
APC   1260000 perm   1877 sec   (671 perm/sec)   p_kst 7.936508e-07   p_cons 8.312222e-01   p_joint 4.047619e-05

Joint ci ratio: 5.435948e-01	ci left: 2.990002e-05	ci right 5.279934e-05	k: 51	n:1270000
Cons ci ratio: 1.567027e-03	ci left: 8.306389e-01	ci right 8.319423e-01	k: 1055740	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
APC   1270000 perm   1896 sec   (670 perm/sec)   p_kst 7.874016e-07   p_cons 8.312913e-01   p_joint 4.015748e-05

Joint ci ratio: 5.435949e-01	ci left: 2.966643e-05	ci right 5.238684e-05	k: 51	n:1280000
Cons ci ratio: 1.560915e-03	ci left: 8.306376e-01	ci right 8.319359e-01	k: 1064048	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
APC   1280000 perm   1915 sec   (668 perm/sec)   p_kst 7.812500e-07   p_cons 8.312875e-01   p_joint 3.984375e-05

Joint ci ratio: 5.435950e-01	ci left: 2.943645e-05	ci right 5.198075e-05	k: 51	n:1290000
Cons ci ratio: 1.554565e-03	ci left: 8.306922e-01	ci right 8.319854e-01	k: 1072428	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
APC   1290000 perm   1934 sec   (667 perm/sec)   p_kst 7.751938e-07   p_cons 8.313395e-01   p_joint 3.953488e-05

Joint ci ratio: 5.435951e-01	ci left: 2.921002e-05	ci right 5.158090e-05	k: 51	n:1300000
Cons ci ratio: 1.548474e-03	ci left: 8.307129e-01	ci right 8.320010e-01	k: 1080765	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
APC   1300000 perm   1954 sec   (665 perm/sec)   p_kst 7.692308e-07   p_cons 8.313577e-01   p_joint 3.923077e-05

Joint ci ratio: 5.384423e-01	ci left: 2.964601e-05	ci right 5.205394e-05	k: 52	n:1310000
Cons ci ratio: 1.542522e-03	ci left: 8.307211e-01	ci right 8.320042e-01	k: 1089086	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
APC   1310000 perm   1973 sec   (664 perm/sec)   p_kst 7.633588e-07   p_cons 8.313634e-01   p_joint 3.969466e-05

Joint ci ratio: 5.334333e-01	ci left: 3.007638e-05	ci right 5.251885e-05	k: 53	n:1320000
Cons ci ratio: 1.536691e-03	ci left: 8.307192e-01	ci right 8.319975e-01	k: 1097394	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
APC   1320000 perm   1992 sec   (663 perm/sec)   p_kst 7.575758e-07   p_cons 8.313591e-01   p_joint 4.015152e-05

Joint ci ratio: 5.238208e-01	ci left: 3.115317e-05	ci right 5.382678e-05	k: 55	n:1330000
Cons ci ratio: 1.530942e-03	ci left: 8.307144e-01	ci right 8.319879e-01	k: 1105698	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
APC   1330000 perm   2011 sec   (661 perm/sec)   p_kst 7.518797e-07   p_cons 8.313519e-01   p_joint 4.135338e-05

Joint ci ratio: 5.238209e-01	ci left: 3.092069e-05	ci right 5.342509e-05	k: 55	n:1340000
Cons ci ratio: 1.525294e-03	ci left: 8.307030e-01	ci right 8.319717e-01	k: 1113993	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
APC   1340000 perm   2031 sec   (660 perm/sec)   p_kst 7.462687e-07   p_cons 8.313381e-01   p_joint 4.104478e-05

Joint ci ratio: 5.192055e-01	ci left: 3.133481e-05	ci right 5.386682e-05	k: 56	n:1350000
Cons ci ratio: 1.519640e-03	ci left: 8.307043e-01	ci right 8.319684e-01	k: 1122305	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
APC   1350000 perm   2050 sec   (658 perm/sec)   p_kst 7.407407e-07   p_cons 8.313370e-01   p_joint 4.148148e-05

Joint ci ratio: 5.192056e-01	ci left: 3.110441e-05	ci right 5.347074e-05	k: 56	n:1360000
Cons ci ratio: 1.513878e-03	ci left: 8.307373e-01	ci right 8.319966e-01	k: 1130660	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
APC   1360000 perm   2070 sec   (657 perm/sec)   p_kst 7.352941e-07   p_cons 8.313676e-01   p_joint 4.117647e-05

Joint ci ratio: 5.192057e-01	ci left: 3.087737e-05	ci right 5.308045e-05	k: 56	n:1370000
Cons ci ratio: 1.508459e-03	ci left: 8.307179e-01	ci right 8.319727e-01	k: 1138944	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
APC   1370000 perm   2090 sec   (656 perm/sec)   p_kst 7.299270e-07   p_cons 8.313460e-01   p_joint 4.087591e-05

Joint ci ratio: 5.192058e-01	ci left: 3.065362e-05	ci right 5.269581e-05	k: 56	n:1380000
Cons ci ratio: 1.503020e-03	ci left: 8.307133e-01	ci right 8.319635e-01	k: 1147248	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
APC   1380000 perm   2109 sec   (654 perm/sec)   p_kst 7.246377e-07   p_cons 8.313391e-01   p_joint 4.057971e-05

Joint ci ratio: 5.192059e-01	ci left: 3.043309e-05	ci right 5.231671e-05	k: 56	n:1390000
Cons ci ratio: 1.497652e-03	ci left: 8.307067e-01	ci right 8.319524e-01	k: 1155549	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
APC   1390000 perm   2129 sec   (653 perm/sec)   p_kst 7.194245e-07   p_cons 8.313302e-01   p_joint 4.028777e-05

Joint ci ratio: 5.192059e-01	ci left: 3.021571e-05	ci right 5.194302e-05	k: 56	n:1400000
Cons ci ratio: 1.492405e-03	ci left: 8.306879e-01	ci right 8.319293e-01	k: 1163833	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
APC   1400000 perm   2149 sec   (651 perm/sec)   p_kst 7.142857e-07   p_cons 8.313093e-01   p_joint 4.000000e-05

Joint ci ratio: 5.192060e-01	ci left: 3.000141e-05	ci right 5.157463e-05	k: 56	n:1410000
Cons ci ratio: 1.487160e-03	ci left: 8.306794e-01	ci right 8.319164e-01	k: 1172131	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
APC   1410000 perm   2169 sec   (650 perm/sec)   p_kst 7.092199e-07   p_cons 8.312986e-01   p_joint 3.971631e-05

Joint ci ratio: 5.103297e-01	ci left: 3.101552e-05	ci right 5.280141e-05	k: 58	n:1420000
Cons ci ratio: 1.481918e-03	ci left: 8.306809e-01	ci right 8.319135e-01	k: 1180443	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
APC   1420000 perm   2189 sec   (649 perm/sec)   p_kst 7.042254e-07   p_cons 8.312979e-01   p_joint 4.084507e-05

Joint ci ratio: 5.103298e-01	ci left: 3.079862e-05	ci right 5.243217e-05	k: 58	n:1430000
Cons ci ratio: 1.476771e-03	ci left: 8.306747e-01	ci right 8.319030e-01	k: 1188744	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
APC   1430000 perm   2209 sec   (647 perm/sec)   p_kst 6.993007e-07   p_cons 8.312895e-01   p_joint 4.055944e-05

Joint ci ratio: 5.103299e-01	ci left: 3.058474e-05	ci right 5.206806e-05	k: 58	n:1440000
Cons ci ratio: 1.471477e-03	ci left: 8.307068e-01	ci right 8.319307e-01	k: 1197100	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
APC   1440000 perm   2229 sec   (646 perm/sec)   p_kst 6.944444e-07   p_cons 8.313194e-01   p_joint 4.027778e-05

Joint ci ratio: 5.060592e-01	ci left: 3.097499e-05	ci right 5.248638e-05	k: 59	n:1450000
Cons ci ratio: 1.466381e-03	ci left: 8.307116e-01	ci right 8.319313e-01	k: 1205417	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
APC   1450000 perm   2249 sec   (645 perm/sec)   p_kst 6.896552e-07   p_cons 8.313221e-01   p_joint 4.068966e-05

Joint ci ratio: 5.060593e-01	ci left: 3.076283e-05	ci right 5.212689e-05	k: 59	n:1460000
Cons ci ratio: 1.461401e-03	ci left: 8.307039e-01	ci right 8.319194e-01	k: 1213716	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
APC   1460000 perm   2269 sec   (643 perm/sec)   p_kst 6.849315e-07   p_cons 8.313123e-01   p_joint 4.041096e-05

Joint ci ratio: 5.018940e-01	ci left: 3.114730e-05	ci right 5.253840e-05	k: 60	n:1470000
Cons ci ratio: 1.456500e-03	ci left: 8.306909e-01	ci right 8.319023e-01	k: 1222007	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
APC   1470000 perm   2290 sec   (642 perm/sec)   p_kst 6.802721e-07   p_cons 8.312973e-01   p_joint 4.081633e-05

Joint ci ratio: 5.018941e-01	ci left: 3.093684e-05	ci right 5.218341e-05	k: 60	n:1480000
Cons ci ratio: 1.451620e-03	ci left: 8.306835e-01	ci right 8.318909e-01	k: 1230306	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
APC   1480000 perm   2310 sec   (641 perm/sec)   p_kst 6.756757e-07   p_cons 8.312878e-01   p_joint 4.054054e-05

Joint ci ratio: 5.018941e-01	ci left: 3.072921e-05	ci right 5.183319e-05	k: 60	n:1490000
Cons ci ratio: 1.446858e-03	ci left: 8.306628e-01	ci right 8.318661e-01	k: 1238585	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
APC   1490000 perm   2330 sec   (639 perm/sec)   p_kst 6.711409e-07   p_cons 8.312651e-01   p_joint 4.026846e-05

Joint ci ratio: 5.238221e-01	ci left: 2.762247e-05	ci right 4.772644e-05	k: 55	n:1500000
Cons ci ratio: 1.441848e-03	ci left: 8.306997e-01	ci right 8.318990e-01	k: 1246950	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
APC   1500000 perm   2351 sec   (638 perm/sec)   p_kst 6.666667e-07   p_cons 8.313000e-01   p_joint 3.666667e-05

Joint ci ratio: 5.238221e-01	ci left: 2.743954e-05	ci right 4.741038e-05	k: 55	n:1510000
Cons ci ratio: 1.436763e-03	ci left: 8.307608e-01	ci right 8.319559e-01	k: 1255352	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
APC   1510000 perm   2372 sec   (637 perm/sec)   p_kst 6.622517e-07   p_cons 8.313589e-01   p_joint 3.642384e-05

Joint ci ratio: 5.238222e-01	ci left: 2.725901e-05	ci right 4.709847e-05	k: 55	n:1520000
Cons ci ratio: 1.432122e-03	ci left: 8.307445e-01	ci right 8.319358e-01	k: 1263638	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
APC   1520000 perm   2392 sec   (635 perm/sec)   p_kst 6.578947e-07   p_cons 8.313408e-01   p_joint 3.618421e-05

Joint ci ratio: 5.192068e-01	ci left: 2.764835e-05	ci right 4.752958e-05	k: 56	n:1530000
Cons ci ratio: 1.427389e-03	ci left: 8.307554e-01	ci right 8.319427e-01	k: 1271965	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
APC   1530000 perm   2413 sec   (634 perm/sec)   p_kst 6.535948e-07   p_cons 8.313497e-01   p_joint 3.660131e-05

Joint ci ratio: 5.192069e-01	ci left: 2.746881e-05	ci right 4.722095e-05	k: 56	n:1540000
Cons ci ratio: 1.422930e-03	ci left: 8.307212e-01	ci right 8.319048e-01	k: 1280223	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
APC   1540000 perm   2434 sec   (633 perm/sec)   p_kst 6.493506e-07   p_cons 8.313136e-01   p_joint 3.636364e-05

Joint ci ratio: 5.192070e-01	ci left: 2.729159e-05	ci right 4.691630e-05	k: 56	n:1550000
Cons ci ratio: 1.418333e-03	ci left: 8.307231e-01	ci right 8.319028e-01	k: 1288536	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
APC   1550000 perm   2455 sec   (631 perm/sec)   p_kst 6.451613e-07   p_cons 8.313135e-01   p_joint 3.612903e-05

Joint ci ratio: 5.192070e-01	ci left: 2.711665e-05	ci right 4.661556e-05	k: 56	n:1560000
Cons ci ratio: 1.413689e-03	ci left: 8.307429e-01	ci right 8.319187e-01	k: 1296877	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
APC   1560000 perm   2476 sec   (630 perm/sec)   p_kst 6.410256e-07   p_cons 8.313314e-01   p_joint 3.589744e-05

Joint ci ratio: 5.192071e-01	ci left: 2.694393e-05	ci right 4.631864e-05	k: 56	n:1570000
Cons ci ratio: 1.409357e-03	ci left: 8.307095e-01	ci right 8.318817e-01	k: 1305135	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
APC   1570000 perm   2497 sec   (629 perm/sec)   p_kst 6.369427e-07   p_cons 8.312962e-01   p_joint 3.566879e-05

Joint ci ratio: 5.192072e-01	ci left: 2.677340e-05	ci right 4.602549e-05	k: 56	n:1580000
Cons ci ratio: 1.405099e-03	ci left: 8.306695e-01	ci right 8.318381e-01	k: 1313382	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
APC   1580000 perm   2518 sec   (627 perm/sec)   p_kst 6.329114e-07   p_cons 8.312544e-01   p_joint 3.544304e-05

Joint ci ratio: 5.192072e-01	ci left: 2.660501e-05	ci right 4.573602e-05	k: 56	n:1590000
Cons ci ratio: 1.400622e-03	ci left: 8.306817e-01	ci right 8.318466e-01	k: 1321711	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
APC   1590000 perm   2539 sec   (626 perm/sec)   p_kst 6.289308e-07   p_cons 8.312648e-01   p_joint 3.522013e-05

Joint ci ratio: 5.192073e-01	ci left: 2.643873e-05	ci right 4.545017e-05	k: 56	n:1600000
Cons ci ratio: 1.396029e-03	ci left: 8.307257e-01	ci right 8.318868e-01	k: 1330091	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
APC   1600000 perm   2561 sec   (625 perm/sec)   p_kst 6.250000e-07   p_cons 8.313069e-01   p_joint 3.500000e-05

Joint ci ratio: 5.192073e-01	ci left: 2.627451e-05	ci right 4.516788e-05	k: 56	n:1610000
Cons ci ratio: 1.391613e-03	ci left: 8.307424e-01	ci right 8.318999e-01	k: 1338428	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
APC   1610000 perm   2582 sec   (624 perm/sec)   p_kst 6.211180e-07   p_cons 8.313217e-01   p_joint 3.478261e-05

Joint ci ratio: 5.192074e-01	ci left: 2.611232e-05	ci right 4.488906e-05	k: 56	n:1620000
Cons ci ratio: 1.387336e-03	ci left: 8.307391e-01	ci right 8.318930e-01	k: 1346733	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
APC   1620000 perm   2603 sec   (622 perm/sec)   p_kst 6.172840e-07   p_cons 8.313167e-01   p_joint 3.456790e-05

Joint ci ratio: 5.147119e-01	ci left: 2.648553e-05	ci right 4.530658e-05	k: 57	n:1630000
Cons ci ratio: 1.382962e-03	ci left: 8.307635e-01	ci right 8.319138e-01	k: 1355083	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
APC   1630000 perm   2625 sec   (621 perm/sec)   p_kst 6.134969e-07   p_cons 8.313393e-01   p_joint 3.496933e-05

Joint ci ratio: 5.147120e-01	ci left: 2.632403e-05	ci right 4.503032e-05	k: 57	n:1640000
Cons ci ratio: 1.378768e-03	ci left: 8.307595e-01	ci right 8.319064e-01	k: 1363387	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
APC   1640000 perm   2646 sec   (620 perm/sec)   p_kst 6.097561e-07   p_cons 8.313335e-01   p_joint 3.475610e-05

Joint ci ratio: 5.103313e-01	ci left: 2.669212e-05	ci right 4.544125e-05	k: 58	n:1650000
Cons ci ratio: 1.374510e-03	ci left: 8.307763e-01	ci right 8.319195e-01	k: 1371725	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
APC   1650000 perm   2668 sec   (618 perm/sec)   p_kst 6.060606e-07   p_cons 8.313485e-01   p_joint 3.515152e-05

Joint ci ratio: 5.103313e-01	ci left: 2.653133e-05	ci right 4.516751e-05	k: 58	n:1660000
Cons ci ratio: 1.370256e-03	ci left: 8.308000e-01	ci right 8.319398e-01	k: 1380075	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
APC   1660000 perm   2690 sec   (617 perm/sec)   p_kst 6.024096e-07   p_cons 8.313705e-01   p_joint 3.493976e-05

Joint ci ratio: 5.060606e-01	ci left: 2.689444e-05	ci right 4.557204e-05	k: 59	n:1670000
Cons ci ratio: 1.365963e-03	ci left: 8.308397e-01	ci right 8.319759e-01	k: 1388452	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
APC   1670000 perm   2713 sec   (616 perm/sec)   p_kst 5.988024e-07   p_cons 8.314084e-01   p_joint 3.532934e-05

Joint ci ratio: 5.018953e-01	ci left: 2.725387e-05	ci right 4.597113e-05	k: 60	n:1680000
Cons ci ratio: 1.361918e-03	ci left: 8.308360e-01	ci right 8.319688e-01	k: 1396757	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
APC   1680000 perm   2734 sec   (614 perm/sec)   p_kst 5.952381e-07   p_cons 8.314030e-01   p_joint 3.571429e-05

Joint ci ratio: 5.018954e-01	ci left: 2.709260e-05	ci right 4.569911e-05	k: 60	n:1690000
Cons ci ratio: 1.357917e-03	ci left: 8.308305e-01	ci right 8.319601e-01	k: 1405059	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
APC   1690000 perm   2756 sec   (613 perm/sec)   p_kst 5.917160e-07   p_cons 8.313959e-01   p_joint 3.550296e-05

Joint ci ratio: 5.018954e-01	ci left: 2.693323e-05	ci right 4.543030e-05	k: 60	n:1700000
Cons ci ratio: 1.354144e-03	ci left: 8.307851e-01	ci right 8.319114e-01	k: 1413293	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
APC   1700000 perm   2778 sec   (612 perm/sec)   p_kst 5.882353e-07   p_cons 8.313488e-01   p_joint 3.529412e-05

Joint ci ratio: 4.978313e-01	ci left: 2.728675e-05	ci right 4.582260e-05	k: 61	n:1710000
Cons ci ratio: 1.350158e-03	ci left: 8.307911e-01	ci right 8.319142e-01	k: 1421614	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
APC   1710000 perm   2800 sec   (611 perm/sec)   p_kst 5.847953e-07   p_cons 8.313532e-01   p_joint 3.567251e-05

Joint ci ratio: 4.938644e-01	ci left: 2.763676e-05	ci right 4.620977e-05	k: 62	n:1720000
Cons ci ratio: 1.346206e-03	ci left: 8.307971e-01	ci right 8.319169e-01	k: 1429935	n:1720000
KS ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
APC   1720000 perm   2822 sec   (609 perm/sec)   p_kst 5.813953e-07   p_cons 8.313576e-01   p_joint 3.604651e-05

Joint ci ratio: 4.899908e-01	ci left: 2.798331e-05	ci right 4.659188e-05	k: 63	n:1730000
Cons ci ratio: 1.342292e-03	ci left: 8.308025e-01	ci right 8.319190e-01	k: 1438255	n:1730000
KS ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
APC   1730000 perm   2845 sec   (608 perm/sec)   p_kst 5.780347e-07   p_cons 8.313613e-01   p_joint 3.641618e-05

Joint ci ratio: 4.862069e-01	ci left: 2.832643e-05	ci right 4.696905e-05	k: 64	n:1740000
Cons ci ratio: 1.338338e-03	ci left: 8.308233e-01	ci right 8.319365e-01	k: 1446602	n:1740000
KS ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
APC   1740000 perm   2867 sec   (607 perm/sec)   p_kst 5.747126e-07   p_cons 8.313805e-01   p_joint 3.678161e-05

Joint ci ratio: 4.862070e-01	ci left: 2.816457e-05	ci right 4.670066e-05	k: 64	n:1750000
Cons ci ratio: 1.334562e-03	ci left: 8.308136e-01	ci right 8.319236e-01	k: 1454896	n:1750000
KS ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
APC   1750000 perm   2889 sec   (606 perm/sec)   p_kst 5.714286e-07   p_cons 8.313691e-01   p_joint 3.657143e-05

Joint ci ratio: 4.862070e-01	ci left: 2.800454e-05	ci right 4.643532e-05	k: 64	n:1760000
Cons ci ratio: 1.330800e-03	ci left: 8.308079e-01	ci right 8.319148e-01	k: 1463197	n:1760000
KS ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
APC   1760000 perm   2912 sec   (604 perm/sec)   p_kst 5.681818e-07   p_cons 8.313619e-01   p_joint 3.636364e-05

Joint ci ratio: 4.825095e-01	ci left: 2.834227e-05	ci right 4.680645e-05	k: 65	n:1770000
Cons ci ratio: 1.327005e-03	ci left: 8.308159e-01	ci right 8.319197e-01	k: 1471522	n:1770000
KS ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
APC   1770000 perm   2935 sec   (603 perm/sec)   p_kst 5.649718e-07   p_cons 8.313684e-01   p_joint 3.672316e-05

Joint ci ratio: 4.788951e-01	ci left: 2.867674e-05	ci right 4.717290e-05	k: 66	n:1780000
Cons ci ratio: 1.323160e-03	ci left: 8.308413e-01	ci right 8.319419e-01	k: 1479878	n:1780000
KS ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
APC   1780000 perm   2958 sec   (602 perm/sec)   p_kst 5.617978e-07   p_cons 8.313921e-01   p_joint 3.707865e-05

Joint ci ratio: 4.825096e-01	ci left: 2.802560e-05	ci right 4.628348e-05	k: 65	n:1790000
Cons ci ratio: 1.319453e-03	ci left: 8.308440e-01	ci right 8.319415e-01	k: 1488194	n:1790000
KS ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
APC   1790000 perm   2981 sec   (601 perm/sec)   p_kst 5.586592e-07   p_cons 8.313933e-01   p_joint 3.631285e-05

Joint ci ratio: 4.825097e-01	ci left: 2.786990e-05	ci right 4.602635e-05	k: 65	n:1800000
Cons ci ratio: 1.315811e-03	ci left: 8.308394e-01	ci right 8.319339e-01	k: 1496497	n:1800000
KS ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
APC   1800000 perm   3003 sec   (599 perm/sec)   p_kst 5.555556e-07   p_cons 8.313872e-01   p_joint 3.611111e-05

Joint ci ratio: 4.788952e-01	ci left: 2.820143e-05	ci right 4.639103e-05	k: 66	n:1810000
Cons ci ratio: 1.312238e-03	ci left: 8.308267e-01	ci right 8.319181e-01	k: 1504785	n:1810000
KS ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
APC   1810000 perm   3026 sec   (598 perm/sec)   p_kst 5.524862e-07   p_cons 8.313729e-01   p_joint 3.646409e-05

Joint ci ratio: 4.788953e-01	ci left: 2.804648e-05	ci right 4.613614e-05	k: 66	n:1820000
Cons ci ratio: 1.308676e-03	ci left: 8.308179e-01	ci right 8.319064e-01	k: 1513080	n:1820000
KS ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
APC   1820000 perm   3050 sec   (597 perm/sec)   p_kst 5.494505e-07   p_cons 8.313626e-01   p_joint 3.626374e-05

Joint ci ratio: 4.788953e-01	ci left: 2.789322e-05	ci right 4.588403e-05	k: 66	n:1830000
Cons ci ratio: 1.305250e-03	ci left: 8.307862e-01	ci right 8.318718e-01	k: 1521333	n:1830000
KS ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
APC   1830000 perm   3072 sec   (596 perm/sec)   p_kst 5.464481e-07   p_cons 8.313295e-01   p_joint 3.606557e-05

Joint ci ratio: 4.788954e-01	ci left: 2.774162e-05	ci right 4.563466e-05	k: 66	n:1840000
Cons ci ratio: 1.301848e-03	ci left: 8.307554e-01	ci right 8.318381e-01	k: 1529587	n:1840000
KS ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
APC   1840000 perm   3095 sec   (594 perm/sec)   p_kst 5.434783e-07   p_cons 8.312973e-01   p_joint 3.586957e-05

Joint ci ratio: 4.788954e-01	ci left: 2.759167e-05	ci right 4.538799e-05	k: 66	n:1850000
Cons ci ratio: 1.298314e-03	ci left: 8.307590e-01	ci right 8.318388e-01	k: 1537904	n:1850000
KS ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
APC   1850000 perm   3118 sec   (593 perm/sec)   p_kst 5.405405e-07   p_cons 8.312995e-01   p_joint 3.567568e-05

Joint ci ratio: 4.788955e-01	ci left: 2.744333e-05	ci right 4.514397e-05	k: 66	n:1860000
Cons ci ratio: 1.294745e-03	ci left: 8.307766e-01	ci right 8.318535e-01	k: 1546247	n:1860000
KS ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
APC   1860000 perm   3141 sec   (592 perm/sec)   p_kst 5.376344e-07   p_cons 8.313156e-01   p_joint 3.548387e-05

Joint ci ratio: 4.788955e-01	ci left: 2.729657e-05	ci right 4.490256e-05	k: 66	n:1870000
Cons ci ratio: 1.291198e-03	ci left: 8.307957e-01	ci right 8.318696e-01	k: 1554593	n:1870000
KS ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
APC   1870000 perm   3165 sec   (591 perm/sec)   p_kst 5.347594e-07   p_cons 8.313332e-01   p_joint 3.529412e-05

Joint ci ratio: 4.788956e-01	ci left: 2.715137e-05	ci right 4.466371e-05	k: 66	n:1880000
Cons ci ratio: 1.287582e-03	ci left: 8.308358e-01	ci right 8.319068e-01	k: 1562979	n:1880000
KS ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
APC   1880000 perm   3188 sec   (590 perm/sec)   p_kst 5.319149e-07   p_cons 8.313718e-01   p_joint 3.510638e-05

Joint ci ratio: 4.753611e-01	ci left: 2.747316e-05	ci right 4.501970e-05	k: 67	n:1890000
Cons ci ratio: 1.284175e-03	ci left: 8.308363e-01	ci right 8.319045e-01	k: 1571291	n:1890000
KS ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
APC   1890000 perm   3211 sec   (589 perm/sec)   p_kst 5.291005e-07   p_cons 8.313709e-01   p_joint 3.544974e-05

Joint ci ratio: 4.753612e-01	ci left: 2.732856e-05	ci right 4.478275e-05	k: 67	n:1900000
Cons ci ratio: 1.280913e-03	ci left: 8.308110e-01	ci right 8.318764e-01	k: 1579554	n:1900000
KS ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
APC   1900000 perm   3234 sec   (588 perm/sec)   p_kst 5.263158e-07   p_cons 8.313442e-01   p_joint 3.526316e-05

Joint ci ratio: 4.753612e-01	ci left: 2.718548e-05	ci right 4.454829e-05	k: 67	n:1910000
Cons ci ratio: 1.277642e-03	ci left: 8.307933e-01	ci right 8.318559e-01	k: 1587831	n:1910000
KS ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
APC   1910000 perm   3258 sec   (586 perm/sec)   p_kst 5.235602e-07   p_cons 8.313251e-01   p_joint 3.507853e-05

Joint ci ratio: 4.753613e-01	ci left: 2.704389e-05	ci right 4.431627e-05	k: 67	n:1920000
Cons ci ratio: 1.274311e-03	ci left: 8.307946e-01	ci right 8.318544e-01	k: 1596144	n:1920000
KS ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
APC   1920000 perm   3281 sec   (585 perm/sec)   p_kst 5.208333e-07   p_cons 8.313250e-01   p_joint 3.489583e-05

Joint ci ratio: 4.753613e-01	ci left: 2.690377e-05	ci right 4.408665e-05	k: 67	n:1930000
Cons ci ratio: 1.270903e-03	ci left: 8.308186e-01	ci right 8.318757e-01	k: 1604501	n:1930000
KS ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
APC   1930000 perm   3305 sec   (584 perm/sec)   p_kst 5.181347e-07   p_cons 8.313477e-01   p_joint 3.471503e-05

Joint ci ratio: 4.753614e-01	ci left: 2.676509e-05	ci right 4.385940e-05	k: 67	n:1940000
Cons ci ratio: 1.267545e-03	ci left: 8.308373e-01	ci right 8.318916e-01	k: 1612848	n:1940000
KS ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
APC   1940000 perm   3328 sec   (583 perm/sec)   p_kst 5.154639e-07   p_cons 8.313649e-01   p_joint 3.453608e-05

Joint ci ratio: 4.753614e-01	ci left: 2.662783e-05	ci right 4.363448e-05	k: 67	n:1950000
Cons ci ratio: 1.264205e-03	ci left: 8.308578e-01	ci right 8.319094e-01	k: 1621199	n:1950000
KS ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
APC   1950000 perm   3352 sec   (582 perm/sec)   p_kst 5.128205e-07   p_cons 8.313841e-01   p_joint 3.435897e-05

Joint ci ratio: 4.719041e-01	ci left: 2.694125e-05	ci right 4.398255e-05	k: 68	n:1960000
Cons ci ratio: 1.261060e-03	ci left: 8.308404e-01	ci right 8.318893e-01	k: 1629476	n:1960000
KS ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
APC   1960000 perm   3376 sec   (581 perm/sec)   p_kst 5.102041e-07   p_cons 8.313653e-01   p_joint 3.469388e-05

Joint ci ratio: 4.685212e-01	ci left: 2.725194e-05	ci right 4.432665e-05	k: 69	n:1970000
Cons ci ratio: 1.257782e-03	ci left: 8.308581e-01	ci right 8.319043e-01	k: 1637822	n:1970000
KS ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
APC   1970000 perm   3400 sec   (579 perm/sec)   p_kst 5.076142e-07   p_cons 8.313817e-01   p_joint 3.502538e-05

Joint ci ratio: 4.719042e-01	ci left: 2.666912e-05	ci right 4.353829e-05	k: 68	n:1980000
Cons ci ratio: 1.254642e-03	ci left: 8.308505e-01	ci right 8.318940e-01	k: 1646118	n:1980000
KS ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
APC   1980000 perm   3424 sec   (578 perm/sec)   p_kst 5.050505e-07   p_cons 8.313727e-01   p_joint 3.434343e-05

Joint ci ratio: 4.719042e-01	ci left: 2.653510e-05	ci right 4.331950e-05	k: 68	n:1990000
Cons ci ratio: 1.251328e-03	ci left: 8.308871e-01	ci right 8.319280e-01	k: 1654502	n:1990000
KS ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
APC   1990000 perm   3449 sec   (577 perm/sec)   p_kst 5.025126e-07   p_cons 8.314080e-01   p_joint 3.417085e-05

Joint ci ratio: 4.719043e-01	ci left: 2.640242e-05	ci right 4.310291e-05	k: 68	n:2000000
Cons ci ratio: 1.248147e-03	ci left: 8.308994e-01	ci right 8.319376e-01	k: 1662838	n:2000000
KS ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
APC   2000000 perm   3473 sec   (576 perm/sec)   p_kst 5.000000e-07   p_cons 8.314190e-01   p_joint 3.400000e-05

Joint ci ratio: 4.719043e-01	ci left: 2.627107e-05	ci right 4.288846e-05	k: 68	n:2010000
Cons ci ratio: 1.244945e-03	ci left: 8.309215e-01	ci right 8.319571e-01	k: 1671194	n:2010000
KS ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
APC   2010000 perm   3498 sec   (575 perm/sec)   p_kst 4.975124e-07   p_cons 8.314398e-01   p_joint 3.383085e-05

Joint ci ratio: 4.719044e-01	ci left: 2.614101e-05	ci right 4.267615e-05	k: 68	n:2020000
Cons ci ratio: 1.241872e-03	ci left: 8.309201e-01	ci right 8.319532e-01	k: 1679503	n:2020000
KS ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
APC   2020000 perm   3522 sec   (574 perm/sec)   p_kst 4.950495e-07   p_cons 8.314371e-01   p_joint 3.366337e-05

Joint ci ratio: 4.719044e-01	ci left: 2.601224e-05	ci right 4.246592e-05	k: 68	n:2030000
Cons ci ratio: 1.238801e-03	ci left: 8.309232e-01	ci right 8.319537e-01	k: 1687821	n:2030000
KS ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
APC   2030000 perm   3546 sec   (572 perm/sec)   p_kst 4.926108e-07   p_cons 8.314389e-01   p_joint 3.349754e-05

Joint ci ratio: 4.685215e-01	ci left: 2.631682e-05	ci right 4.280565e-05	k: 69	n:2040000
Cons ci ratio: 1.235687e-03	ci left: 8.309415e-01	ci right 8.319694e-01	k: 1696170	n:2040000
KS ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
APC   2040000 perm   3571 sec   (571 perm/sec)   p_kst 4.901961e-07   p_cons 8.314559e-01   p_joint 3.382353e-05

Joint ci ratio: 5.489028e-01	ci left: 1.810296e-05	ci right 3.215537e-05	k: 50	n:2050000
Cons ci ratio: 1.232597e-03	ci left: 8.309591e-01	ci right 8.319844e-01	k: 1704518	n:2050000
KS ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
APC   2050000 perm   3596 sec   (570 perm/sec)   p_kst 4.878049e-07   p_cons 8.314722e-01   p_joint 2.439024e-05

Joint ci ratio: 5.599932e-01	ci left: 1.718034e-05	ci right 3.089359e-05	k: 48	n:2060000
Cons ci ratio: 1.229610e-03	ci left: 8.309585e-01	ci right 8.319813e-01	k: 1712829	n:2060000
KS ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
APC   2060000 perm   3620 sec   (569 perm/sec)   p_kst 4.854369e-07   p_cons 8.314704e-01   p_joint 2.330097e-05

Joint ci ratio: 5.599932e-01	ci left: 1.709735e-05	ci right 3.074435e-05	k: 48	n:2070000
Cons ci ratio: 1.226636e-03	ci left: 8.309599e-01	ci right 8.319803e-01	k: 1721144	n:2070000
KS ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
APC   2070000 perm   3645 sec   (568 perm/sec)   p_kst 4.830918e-07   p_cons 8.314705e-01   p_joint 2.318841e-05

Joint ci ratio: 5.599933e-01	ci left: 1.701515e-05	ci right 3.059654e-05	k: 48	n:2080000
Cons ci ratio: 1.223739e-03	ci left: 8.309483e-01	ci right 8.319662e-01	k: 1729432	n:2080000
KS ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
APC   2080000 perm   3670 sec   (567 perm/sec)   p_kst 4.807692e-07   p_cons 8.314577e-01   p_joint 2.307692e-05

Joint ci ratio: 5.599933e-01	ci left: 1.693374e-05	ci right 3.045014e-05	k: 48	n:2090000
Cons ci ratio: 1.220789e-03	ci left: 8.309540e-01	ci right 8.319695e-01	k: 1737756	n:2090000
KS ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
APC   2090000 perm   3695 sec   (566 perm/sec)   p_kst 4.784689e-07   p_cons 8.314622e-01   p_joint 2.296651e-05

Joint ci ratio: 5.599933e-01	ci left: 1.685310e-05	ci right 3.030514e-05	k: 48	n:2100000
Cons ci ratio: 1.217917e-03	ci left: 8.309463e-01	ci right 8.319594e-01	k: 1746052	n:2100000
KS ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
APC   2100000 perm   3720 sec   (564 perm/sec)   p_kst 4.761905e-07   p_cons 8.314533e-01   p_joint 2.285714e-05

Joint ci ratio: 5.599934e-01	ci left: 1.677323e-05	ci right 3.016152e-05	k: 48	n:2110000
Cons ci ratio: 1.215084e-03	ci left: 8.309345e-01	ci right 8.319452e-01	k: 1754339	n:2110000
KS ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
APC   2110000 perm   3745 sec   (563 perm/sec)   p_kst 4.739336e-07   p_cons 8.314403e-01   p_joint 2.274882e-05

Joint ci ratio: 5.599934e-01	ci left: 1.669411e-05	ci right 3.001925e-05	k: 48	n:2120000
Cons ci ratio: 1.212175e-03	ci left: 8.309449e-01	ci right 8.319532e-01	k: 1762673	n:2120000
KS ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
APC   2120000 perm   3770 sec   (562 perm/sec)   p_kst 4.716981e-07   p_cons 8.314495e-01   p_joint 2.264151e-05

Joint ci ratio: 5.599934e-01	ci left: 1.661573e-05	ci right 2.987831e-05	k: 48	n:2130000
Cons ci ratio: 1.209341e-03	ci left: 8.309426e-01	ci right 8.319485e-01	k: 1770980	n:2130000
KS ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
APC   2130000 perm   3795 sec   (561 perm/sec)   p_kst 4.694836e-07   p_cons 8.314460e-01   p_joint 2.253521e-05

Joint ci ratio: 5.599935e-01	ci left: 1.653809e-05	ci right 2.973869e-05	k: 48	n:2140000
Cons ci ratio: 1.206429e-03	ci left: 8.309632e-01	ci right 8.319667e-01	k: 1779336	n:2140000
KS ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
APC   2140000 perm   3821 sec   (560 perm/sec)   p_kst 4.672897e-07   p_cons 8.314654e-01   p_joint 2.242991e-05

Joint ci ratio: 5.599935e-01	ci left: 1.646117e-05	ci right 2.960037e-05	k: 48	n:2150000
Cons ci ratio: 1.203659e-03	ci left: 8.309552e-01	ci right 8.319565e-01	k: 1787631	n:2150000
KS ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
APC   2150000 perm   3846 sec   (559 perm/sec)   p_kst 4.651163e-07   p_cons 8.314563e-01   p_joint 2.232558e-05

Joint ci ratio: 5.599935e-01	ci left: 1.638496e-05	ci right 2.946334e-05	k: 48	n:2160000
Cons ci ratio: 1.200853e-03	ci left: 8.309603e-01	ci right 8.319592e-01	k: 1795954	n:2160000
KS ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
APC   2160000 perm   3872 sec   (558 perm/sec)   p_kst 4.629630e-07   p_cons 8.314602e-01   p_joint 2.222222e-05

Joint ci ratio: 5.599935e-01	ci left: 1.630945e-05	ci right 2.932756e-05	k: 48	n:2170000
Cons ci ratio: 1.198051e-03	ci left: 8.309690e-01	ci right 8.319656e-01	k: 1804285	n:2170000
KS ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
APC   2170000 perm   3897 sec   (557 perm/sec)   p_kst 4.608295e-07   p_cons 8.314677e-01   p_joint 2.211982e-05

Joint ci ratio: 5.543652e-01	ci left: 1.662870e-05	ci right 2.971576e-05	k: 49	n:2180000
Cons ci ratio: 1.195434e-03	ci left: 8.309386e-01	ci right 8.319330e-01	k: 1812531	n:2180000
KS ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
APC   2180000 perm   3923 sec   (556 perm/sec)   p_kst 4.587156e-07   p_cons 8.314362e-01   p_joint 2.247706e-05

Joint ci ratio: 5.489033e-01	ci left: 1.694569e-05	ci right 3.009978e-05	k: 50	n:2190000
Cons ci ratio: 1.192636e-03	ci left: 8.309551e-01	ci right 8.319472e-01	k: 1820879	n:2190000
KS ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
APC   2190000 perm   3949 sec   (555 perm/sec)   p_kst 4.566210e-07   p_cons 8.314516e-01   p_joint 2.283105e-05

Joint ci ratio: 5.489033e-01	ci left: 1.686867e-05	ci right 2.996297e-05	k: 50	n:2200000
Cons ci ratio: 1.189914e-03	ci left: 8.309583e-01	ci right 8.319481e-01	k: 1829198	n:2200000
KS ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
APC   2200000 perm   3975 sec   (554 perm/sec)   p_kst 4.545455e-07   p_cons 8.314536e-01   p_joint 2.272727e-05

Joint ci ratio: 5.489033e-01	ci left: 1.679234e-05	ci right 2.982739e-05	k: 50	n:2210000
Cons ci ratio: 1.187116e-03	ci left: 8.309836e-01	ci right 8.319711e-01	k: 1837566	n:2210000
KS ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
APC   2210000 perm   4000 sec   (552 perm/sec)   p_kst 4.524887e-07   p_cons 8.314778e-01   p_joint 2.262443e-05

Joint ci ratio: 5.489034e-01	ci left: 1.671670e-05	ci right 2.969303e-05	k: 50	n:2220000
Cons ci ratio: 1.184414e-03	ci left: 8.309907e-01	ci right 8.319760e-01	k: 1845894	n:2220000
KS ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
APC   2220000 perm   4026 sec   (551 perm/sec)   p_kst 4.504505e-07   p_cons 8.314838e-01   p_joint 2.252252e-05

Joint ci ratio: 5.489034e-01	ci left: 1.664173e-05	ci right 2.955988e-05	k: 50	n:2230000
Cons ci ratio: 1.181661e-03	ci left: 8.310144e-01	ci right 8.319973e-01	k: 1854259	n:2230000
KS ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
APC   2230000 perm   4052 sec   (550 perm/sec)   p_kst 4.484305e-07   p_cons 8.315063e-01   p_joint 2.242152e-05

Joint ci ratio: 5.489034e-01	ci left: 1.656744e-05	ci right 2.942792e-05	k: 50	n:2240000
Cons ci ratio: 1.178987e-03	ci left: 8.310235e-01	ci right 8.320042e-01	k: 1862592	n:2240000
KS ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
APC   2240000 perm   4078 sec   (549 perm/sec)   p_kst 4.464286e-07   p_cons 8.315143e-01   p_joint 2.232143e-05

Joint ci ratio: 5.489034e-01	ci left: 1.649381e-05	ci right 2.929713e-05	k: 50	n:2250000
Cons ci ratio: 1.176329e-03	ci left: 8.310330e-01	ci right 8.320115e-01	k: 1870926	n:2250000
KS ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
APC   2250000 perm   4105 sec   (548 perm/sec)   p_kst 4.444444e-07   p_cons 8.315227e-01   p_joint 2.222222e-05

Joint ci ratio: 5.489035e-01	ci left: 1.642082e-05	ci right 2.916749e-05	k: 50	n:2260000
Cons ci ratio: 1.173707e-03	ci left: 8.310379e-01	ci right 8.320143e-01	k: 1879250	n:2260000
KS ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
APC   2260000 perm   4131 sec   (547 perm/sec)   p_kst 4.424779e-07   p_cons 8.315265e-01   p_joint 2.212389e-05

Joint ci ratio: 5.489035e-01	ci left: 1.634848e-05	ci right 2.903900e-05	k: 50	n:2270000
Cons ci ratio: 1.171138e-03	ci left: 8.310345e-01	ci right 8.320087e-01	k: 1887555	n:2270000
KS ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
APC   2270000 perm   4159 sec   (546 perm/sec)   p_kst 4.405286e-07   p_cons 8.315220e-01   p_joint 2.202643e-05

Joint ci ratio: 5.489035e-01	ci left: 1.627678e-05	ci right 2.891164e-05	k: 50	n:2280000
Cons ci ratio: 1.168726e-03	ci left: 8.309973e-01	ci right 8.319694e-01	k: 1895783	n:2280000
KS ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
APC   2280000 perm   4185 sec   (545 perm/sec)   p_kst 4.385965e-07   p_cons 8.314838e-01   p_joint 2.192982e-05

Joint ci ratio: 5.489036e-01	ci left: 1.620570e-05	ci right 2.878539e-05	k: 50	n:2290000
Cons ci ratio: 1.166113e-03	ci left: 8.310124e-01	ci right 8.319824e-01	k: 1904130	n:2290000
KS ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
APC   2290000 perm   4211 sec   (544 perm/sec)   p_kst 4.366812e-07   p_cons 8.314978e-01   p_joint 2.183406e-05

Joint ci ratio: 5.435999e-01	ci left: 1.650998e-05	ci right 2.915450e-05	k: 51	n:2300000
Cons ci ratio: 1.163583e-03	ci left: 8.310117e-01	ci right 8.319796e-01	k: 1912441	n:2300000
KS ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
APC   2300000 perm   4238 sec   (543 perm/sec)   p_kst 4.347826e-07   p_cons 8.314961e-01   p_joint 2.217391e-05

Joint ci ratio: 5.436000e-01	ci left: 1.643851e-05	ci right 2.902829e-05	k: 51	n:2310000
Cons ci ratio: 1.161068e-03	ci left: 8.310110e-01	ci right 8.319769e-01	k: 1920752	n:2310000
KS ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
APC   2310000 perm   4265 sec   (542 perm/sec)   p_kst 4.329004e-07   p_cons 8.314944e-01   p_joint 2.207792e-05

Joint ci ratio: 5.436000e-01	ci left: 1.636765e-05	ci right 2.890317e-05	k: 51	n:2320000
Cons ci ratio: 1.158576e-03	ci left: 8.310091e-01	ci right 8.319728e-01	k: 1929060	n:2320000
KS ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
APC   2320000 perm   4292 sec   (541 perm/sec)   p_kst 4.310345e-07   p_cons 8.314914e-01   p_joint 2.198276e-05

Joint ci ratio: 5.436000e-01	ci left: 1.629740e-05	ci right 2.877912e-05	k: 51	n:2330000
Cons ci ratio: 1.156175e-03	ci left: 8.309887e-01	ci right 8.319504e-01	k: 1937325	n:2330000
KS ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
APC   2330000 perm   4319 sec   (540 perm/sec)   p_kst 4.291845e-07   p_cons 8.314700e-01   p_joint 2.188841e-05

Joint ci ratio: 5.384472e-01	ci left: 1.659666e-05	ci right 2.914139e-05	k: 52	n:2340000
Cons ci ratio: 1.153672e-03	ci left: 8.309971e-01	ci right 8.319568e-01	k: 1945657	n:2340000
KS ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
APC   2340000 perm   4346 sec   (538 perm/sec)   p_kst 4.273504e-07   p_cons 8.314774e-01   p_joint 2.222222e-05

Joint ci ratio: 5.384472e-01	ci left: 1.652604e-05	ci right 2.901738e-05	k: 52	n:2350000
Cons ci ratio: 1.151153e-03	ci left: 8.310131e-01	ci right 8.319707e-01	k: 1954007	n:2350000
KS ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
APC   2350000 perm   4373 sec   (537 perm/sec)   p_kst 4.255319e-07   p_cons 8.314923e-01   p_joint 2.212766e-05

Joint ci ratio: 5.384473e-01	ci left: 1.645601e-05	ci right 2.889443e-05	k: 52	n:2360000
Cons ci ratio: 1.148630e-03	ci left: 8.310341e-01	ci right 8.319896e-01	k: 1962369	n:2360000
KS ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
APC   2360000 perm   4400 sec   (536 perm/sec)   p_kst 4.237288e-07   p_cons 8.315123e-01   p_joint 2.203390e-05

Joint ci ratio: 5.384473e-01	ci left: 1.638658e-05	ci right 2.877251e-05	k: 52	n:2370000
Cons ci ratio: 1.146194e-03	ci left: 8.310376e-01	ci right 8.319911e-01	k: 1970690	n:2370000
KS ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
APC   2370000 perm   4427 sec   (535 perm/sec)   p_kst 4.219409e-07   p_cons 8.315148e-01   p_joint 2.194093e-05

Joint ci ratio: 5.384473e-01	ci left: 1.631773e-05	ci right 2.865162e-05	k: 52	n:2380000
Cons ci ratio: 1.143883e-03	ci left: 8.310142e-01	ci right 8.319657e-01	k: 1978947	n:2380000
KS ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
APC   2380000 perm   4454 sec   (534 perm/sec)   p_kst 4.201681e-07   p_cons 8.314903e-01   p_joint 2.184874e-05

Joint ci ratio: 5.384473e-01	ci left: 1.624945e-05	ci right 2.853174e-05	k: 52	n:2390000
Cons ci ratio: 1.141364e-03	ci left: 8.310454e-01	ci right 8.319948e-01	k: 1987334	n:2390000
KS ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
APC   2390000 perm   4482 sec   (533 perm/sec)   p_kst 4.184100e-07   p_cons 8.315205e-01   p_joint 2.175732e-05

Joint ci ratio: 5.543658e-01	ci left: 1.510440e-05	ci right 2.699183e-05	k: 49	n:2400000
Cons ci ratio: 1.138988e-03	ci left: 8.310454e-01	ci right 8.319929e-01	k: 1995647	n:2400000
KS ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
APC   2400000 perm   4509 sec   (532 perm/sec)   p_kst 4.166667e-07   p_cons 8.315196e-01   p_joint 2.041667e-05

Joint ci ratio: 5.543659e-01	ci left: 1.504173e-05	ci right 2.687983e-05	k: 49	n:2410000
Cons ci ratio: 1.136523e-03	ci left: 8.310709e-01	ci right 8.320163e-01	k: 2004021	n:2410000
KS ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
APC   2410000 perm   4537 sec   (531 perm/sec)   p_kst 4.149378e-07   p_cons 8.315440e-01   p_joint 2.033195e-05

Joint ci ratio: 5.543659e-01	ci left: 1.497957e-05	ci right 2.676876e-05	k: 49	n:2420000
Cons ci ratio: 1.134344e-03	ci left: 8.310295e-01	ci right 8.319731e-01	k: 2012234	n:2420000
KS ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
APC   2420000 perm   4564 sec   (530 perm/sec)   p_kst 4.132231e-07   p_cons 8.315017e-01   p_joint 2.024793e-05

Joint ci ratio: 5.543659e-01	ci left: 1.491792e-05	ci right 2.665860e-05	k: 49	n:2430000
Cons ci ratio: 1.131871e-03	ci left: 8.310642e-01	ci right 8.320058e-01	k: 2020631	n:2430000
KS ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
APC   2430000 perm   4592 sec   (529 perm/sec)   p_kst 4.115226e-07   p_cons 8.315354e-01   p_joint 2.016461e-05

Joint ci ratio: 5.334384e-01	ci left: 1.627079e-05	ci right 2.841192e-05	k: 53	n:2440000
Cons ci ratio: 8.482604e-04	ci left: 8.970793e-01	ci right 8.978410e-01	k: 2189804	n:2440000
KS ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
APC   2440000 perm   4619 sec   (528 perm/sec)   p_kst 4.098361e-07   p_cons 8.974607e-01   p_joint 2.172131e-05

Joint ci ratio: 5.334384e-01	ci left: 1.620438e-05	ci right 2.829595e-05	k: 53	n:2450000
Cons ci ratio: 8.465362e-04	ci left: 8.970782e-01	ci right 8.978384e-01	k: 2198774	n:2450000
KS ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
APC   2450000 perm   4647 sec   (527 perm/sec)   p_kst 4.081633e-07   p_cons 8.974588e-01   p_joint 2.163265e-05

Joint ci ratio: 5.285667e-01	ci left: 1.649047e-05	ci right 2.864148e-05	k: 54	n:2460000
Cons ci ratio: 8.447477e-04	ci left: 8.970934e-01	ci right 8.978520e-01	k: 2207784	n:2460000
KS ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
APC   2460000 perm   4675 sec   (526 perm/sec)   p_kst 4.065041e-07   p_cons 8.974732e-01   p_joint 2.195122e-05

Joint ci ratio: 5.285667e-01	ci left: 1.642371e-05	ci right 2.852553e-05	k: 54	n:2470000
Cons ci ratio: 8.431783e-04	ci left: 8.970631e-01	ci right 8.978202e-01	k: 2216682	n:2470000
KS ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
APC   2470000 perm   4704 sec   (525 perm/sec)   p_kst 4.048583e-07   p_cons 8.974421e-01   p_joint 2.186235e-05

Joint ci ratio: 5.285667e-01	ci left: 1.635749e-05	ci right 2.841051e-05	k: 54	n:2480000
Cons ci ratio: 8.415751e-04	ci left: 8.970423e-01	ci right 8.977979e-01	k: 2225603	n:2480000
KS ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
APC   2480000 perm   4732 sec   (524 perm/sec)   p_kst 4.032258e-07   p_cons 8.974206e-01   p_joint 2.177419e-05

Joint ci ratio: 5.285667e-01	ci left: 1.629179e-05	ci right 2.829641e-05	k: 54	n:2490000
Cons ci ratio: 8.398710e-04	ci left: 8.970458e-01	ci right 8.977999e-01	k: 2234584	n:2490000
KS ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
APC   2490000 perm   4759 sec   (523 perm/sec)   p_kst 4.016064e-07   p_cons 8.974233e-01   p_joint 2.168675e-05

Joint ci ratio: 5.285668e-01	ci left: 1.622663e-05	ci right 2.818322e-05	k: 54	n:2500000
Cons ci ratio: 8.381590e-04	ci left: 8.970533e-01	ci right 8.978058e-01	k: 2243575	n:2500000
KS ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
APC   2500000 perm   4787 sec   (522 perm/sec)   p_kst 4.000000e-07   p_cons 8.974300e-01   p_joint 2.160000e-05

Joint ci ratio: 6.625962e-01	ci left: 9.380890e-06	ci right 1.892887e-05	k: 34	n:2510000
Cons ci ratio: 9.269550e-04	ci left: 8.765153e-01	ci right 8.773285e-01	k: 2201075	n:2510000
KS ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
APC   2510000 perm   4816 sec   (521 perm/sec)   p_kst 3.984064e-07   p_cons 8.769223e-01   p_joint 1.354582e-05

Joint ci ratio: 6.625962e-01	ci left: 9.343664e-06	ci right 1.885376e-05	k: 34	n:2520000
Cons ci ratio: 9.252062e-04	ci left: 8.764945e-01	ci right 8.773062e-01	k: 2209790	n:2520000
KS ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
APC   2520000 perm   4844 sec   (520 perm/sec)   p_kst 3.968254e-07   p_cons 8.769008e-01   p_joint 1.349206e-05

Joint ci ratio: 6.625962e-01	ci left: 9.306732e-06	ci right 1.877924e-05	k: 34	n:2530000
Cons ci ratio: 9.234283e-04	ci left: 8.764830e-01	ci right 8.772932e-01	k: 2218528	n:2530000
KS ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
APC   2530000 perm   4872 sec   (519 perm/sec)   p_kst 3.952569e-07   p_cons 8.768885e-01   p_joint 1.343874e-05

Joint ci ratio: 6.625962e-01	ci left: 9.270091e-06	ci right 1.870530e-05	k: 34	n:2540000
Cons ci ratio: 9.216792e-04	ci left: 8.764673e-01	ci right 8.772759e-01	k: 2227255	n:2540000
KS ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
APC   2540000 perm   4900 sec   (518 perm/sec)   p_kst 3.937008e-07   p_cons 8.768720e-01   p_joint 1.338583e-05

Joint ci ratio: 6.625963e-01	ci left: 9.233738e-06	ci right 1.863195e-05	k: 34	n:2550000
Cons ci ratio: 9.199850e-04	ci left: 8.764411e-01	ci right 8.772482e-01	k: 2235955	n:2550000
KS ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
APC   2550000 perm   4930 sec   (517 perm/sec)   p_kst 3.921569e-07   p_cons 8.768451e-01   p_joint 1.333333e-05

Joint ci ratio: 6.625963e-01	ci left: 9.197669e-06	ci right 1.855917e-05	k: 34	n:2560000
Cons ci ratio: 9.182137e-04	ci left: 8.764355e-01	ci right 8.772410e-01	k: 2244707	n:2560000
KS ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
APC   2560000 perm   4958 sec   (516 perm/sec)   p_kst 3.906250e-07   p_cons 8.768387e-01   p_joint 1.328125e-05

Joint ci ratio: 6.625963e-01	ci left: 9.161880e-06	ci right 1.848695e-05	k: 34	n:2570000
Cons ci ratio: 9.165170e-04	ci left: 8.764147e-01	ci right 8.772187e-01	k: 2253420	n:2570000
KS ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
APC   2570000 perm   4987 sec   (515 perm/sec)   p_kst 3.891051e-07   p_cons 8.768171e-01   p_joint 1.322957e-05

Joint ci ratio: 6.625963e-01	ci left: 9.126369e-06	ci right 1.841530e-05	k: 34	n:2580000
Cons ci ratio: 9.146720e-04	ci left: 8.764313e-01	ci right 8.772337e-01	k: 2262229	n:2580000
KS ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
APC   2580000 perm   5016 sec   (514 perm/sec)   p_kst 3.875969e-07   p_cons 8.768329e-01   p_joint 1.317829e-05

Joint ci ratio: 6.625963e-01	ci left: 9.091132e-06	ci right 1.834420e-05	k: 34	n:2590000
Cons ci ratio: 9.129818e-04	ci left: 8.764138e-01	ci right 8.772147e-01	k: 2270950	n:2590000
KS ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
APC   2590000 perm   5045 sec   (513 perm/sec)   p_kst 3.861004e-07   p_cons 8.768147e-01   p_joint 1.312741e-05

Joint ci ratio: 6.625963e-01	ci left: 9.056166e-06	ci right 1.827364e-05	k: 34	n:2600000
Cons ci ratio: 9.112116e-04	ci left: 8.764176e-01	ci right 8.772169e-01	k: 2279726	n:2600000
KS ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
APC   2600000 perm   5074 sec   (512 perm/sec)   p_kst 3.846154e-07   p_cons 8.768177e-01   p_joint 1.307692e-05

Joint ci ratio: 6.625964e-01	ci left: 9.021468e-06	ci right 1.820363e-05	k: 34	n:2610000
Cons ci ratio: 9.093985e-04	ci left: 8.764340e-01	ci right 8.772318e-01	k: 2288535	n:2610000
KS ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
APC   2610000 perm   5104 sec   (511 perm/sec)   p_kst 3.831418e-07   p_cons 8.768333e-01   p_joint 1.302682e-05

Joint ci ratio: 6.625964e-01	ci left: 8.987035e-06	ci right 1.813415e-05	k: 34	n:2620000
Cons ci ratio: 9.076346e-04	ci left: 8.764412e-01	ci right 8.772374e-01	k: 2297320	n:2620000
KS ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
APC   2620000 perm   5133 sec   (510 perm/sec)   p_kst 3.816794e-07   p_cons 8.768397e-01   p_joint 1.297710e-05

Joint ci ratio: 6.625964e-01	ci left: 8.952863e-06	ci right 1.806520e-05	k: 34	n:2630000
Cons ci ratio: 9.058506e-04	ci left: 8.764555e-01	ci right 8.772501e-01	k: 2306124	n:2630000
KS ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
APC   2630000 perm   5163 sec   (509 perm/sec)   p_kst 3.802281e-07   p_cons 8.768532e-01   p_joint 1.292776e-05

Joint ci ratio: 6.625964e-01	ci left: 8.918951e-06	ci right 1.799677e-05	k: 34	n:2640000
Cons ci ratio: 9.040533e-04	ci left: 8.764754e-01	ci right 8.772685e-01	k: 2314943	n:2640000
KS ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
APC   2640000 perm   5192 sec   (508 perm/sec)   p_kst 3.787879e-07   p_cons 8.768723e-01   p_joint 1.287879e-05

Joint ci ratio: 6.625964e-01	ci left: 8.885294e-06	ci right 1.792886e-05	k: 34	n:2650000
Cons ci ratio: 9.023597e-04	ci left: 8.764728e-01	ci right 8.772645e-01	k: 2323703	n:2650000
KS ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
APC   2650000 perm   5221 sec   (508 perm/sec)   p_kst 3.773585e-07   p_cons 8.768691e-01   p_joint 1.283019e-05

Joint ci ratio: 6.625965e-01	ci left: 8.851891e-06	ci right 1.786146e-05	k: 34	n:2660000
Cons ci ratio: 9.007257e-04	ci left: 8.764583e-01	ci right 8.772484e-01	k: 2332431	n:2660000
KS ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
APC   2660000 perm   5250 sec   (507 perm/sec)   p_kst 3.759398e-07   p_cons 8.768538e-01   p_joint 1.278195e-05

Joint ci ratio: 6.625965e-01	ci left: 8.818738e-06	ci right 1.779456e-05	k: 34	n:2670000
Cons ci ratio: 8.990008e-04	ci left: 8.764678e-01	ci right 8.772565e-01	k: 2341223	n:2670000
KS ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
APC   2670000 perm   5279 sec   (506 perm/sec)   p_kst 3.745318e-07   p_cons 8.768625e-01   p_joint 1.273408e-05

Joint ci ratio: 6.625965e-01	ci left: 8.785832e-06	ci right 1.772816e-05	k: 34	n:2680000
Cons ci ratio: 8.973168e-04	ci left: 8.764698e-01	ci right 8.772570e-01	k: 2349995	n:2680000
KS ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
APC   2680000 perm   5308 sec   (505 perm/sec)   p_kst 3.731343e-07   p_cons 8.768638e-01   p_joint 1.268657e-05

Joint ci ratio: 6.625965e-01	ci left: 8.753171e-06	ci right 1.766226e-05	k: 34	n:2690000
Cons ci ratio: 8.956745e-04	ci left: 8.764640e-01	ci right 8.772497e-01	k: 2358746	n:2690000
KS ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
APC   2690000 perm   5338 sec   (504 perm/sec)   p_kst 3.717472e-07   p_cons 8.768572e-01   p_joint 1.263941e-05

Joint ci ratio: 6.625965e-01	ci left: 8.720752e-06	ci right 1.759684e-05	k: 34	n:2700000
Cons ci ratio: 8.938741e-04	ci left: 8.764986e-01	ci right 8.772828e-01	k: 2367606	n:2700000
KS ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
APC   2700000 perm   5368 sec   (503 perm/sec)   p_kst 3.703704e-07   p_cons 8.768911e-01   p_joint 1.259259e-05

Joint ci ratio: 6.625965e-01	ci left: 8.688572e-06	ci right 1.753191e-05	k: 34	n:2710000
Cons ci ratio: 8.922614e-04	ci left: 8.764901e-01	ci right 8.772729e-01	k: 2376350	n:2710000
KS ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
APC   2710000 perm   5398 sec   (502 perm/sec)   p_kst 3.690037e-07   p_cons 8.768819e-01   p_joint 1.254613e-05

Joint ci ratio: 6.625966e-01	ci left: 8.656628e-06	ci right 1.746745e-05	k: 34	n:2720000
Cons ci ratio: 8.906149e-04	ci left: 8.764920e-01	ci right 8.772733e-01	k: 2385122	n:2720000
KS ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
APC   2720000 perm   5428 sec   (501 perm/sec)   p_kst 3.676471e-07   p_cons 8.768831e-01   p_joint 1.250000e-05

Joint ci ratio: 6.625966e-01	ci left: 8.624919e-06	ci right 1.740347e-05	k: 34	n:2730000
Cons ci ratio: 8.889955e-04	ci left: 8.764895e-01	ci right 8.772694e-01	k: 2393882	n:2730000
KS ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
APC   2730000 perm   5458 sec   (500 perm/sec)   p_kst 3.663004e-07   p_cons 8.768799e-01   p_joint 1.245421e-05

Joint ci ratio: 6.625966e-01	ci left: 8.593441e-06	ci right 1.733995e-05	k: 34	n:2740000
Cons ci ratio: 8.873490e-04	ci left: 8.764958e-01	ci right 8.772742e-01	k: 2402666	n:2740000
KS ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
APC   2740000 perm   5488 sec   (499 perm/sec)   p_kst 3.649635e-07   p_cons 8.768854e-01   p_joint 1.240876e-05

Joint ci ratio: 6.625966e-01	ci left: 8.562192e-06	ci right 1.727690e-05	k: 34	n:2750000
Cons ci ratio: 8.856713e-04	ci left: 8.765118e-01	ci right 8.772888e-01	k: 2411477	n:2750000
KS ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
APC   2750000 perm   5518 sec   (498 perm/sec)   p_kst 3.636364e-07   p_cons 8.769007e-01   p_joint 1.236364e-05

Joint ci ratio: 5.977896e-01	ci left: 1.096738e-05	ci right 2.056944e-05	k: 42	n:2760000
Cons ci ratio: 8.840728e-04	ci left: 8.765107e-01	ci right 8.772863e-01	k: 2420241	n:2760000
KS ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
APC   2760000 perm   5547 sec   (498 perm/sec)   p_kst 3.623188e-07   p_cons 8.768989e-01   p_joint 1.521739e-05

Joint ci ratio: 5.977896e-01	ci left: 1.092778e-05	ci right 2.049518e-05	k: 42	n:2770000
Cons ci ratio: 8.824519e-04	ci left: 8.765172e-01	ci right 8.772914e-01	k: 2429026	n:2770000
KS ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
APC   2770000 perm   5576 sec   (497 perm/sec)   p_kst 3.610108e-07   p_cons 8.769047e-01   p_joint 1.516245e-05

Joint ci ratio: 5.977897e-01	ci left: 1.088848e-05	ci right 2.042146e-05	k: 42	n:2780000
Cons ci ratio: 8.808575e-04	ci left: 8.765193e-01	ci right 8.772921e-01	k: 2437799	n:2780000
KS ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
APC   2780000 perm   5606 sec   (496 perm/sec)   p_kst 3.597122e-07   p_cons 8.769061e-01   p_joint 1.510791e-05

Joint ci ratio: 5.977897e-01	ci left: 1.084945e-05	ci right 2.034826e-05	k: 42	n:2790000
Cons ci ratio: 8.792338e-04	ci left: 8.765308e-01	ci right 8.773021e-01	k: 2446598	n:2790000
KS ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
APC   2790000 perm   5636 sec   (495 perm/sec)   p_kst 3.584229e-07   p_cons 8.769168e-01   p_joint 1.505376e-05

Joint ci ratio: 7.040488e-01	ci left: 7.228895e-06	ci right 1.529527e-05	k: 30	n:2800000
Cons ci ratio: 8.777076e-04	ci left: 8.765203e-01	ci right 8.772903e-01	k: 2455336	n:2800000
KS ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
APC   2800000 perm   5665 sec   (494 perm/sec)   p_kst 3.571429e-07   p_cons 8.769057e-01   p_joint 1.071429e-05

Joint ci ratio: 7.040488e-01	ci left: 7.203169e-06	ci right 1.524084e-05	k: 30	n:2810000
Cons ci ratio: 8.761012e-04	ci left: 8.765317e-01	ci right 8.773003e-01	k: 2464135	n:2810000
KS ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
APC   2810000 perm   5696 sec   (493 perm/sec)   p_kst 3.558719e-07   p_cons 8.769164e-01   p_joint 1.067616e-05

Joint ci ratio: 7.040488e-01	ci left: 7.177626e-06	ci right 1.518680e-05	k: 30	n:2820000
Cons ci ratio: 8.745093e-04	ci left: 8.765415e-01	ci right 8.773088e-01	k: 2472930	n:2820000
KS ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
APC   2820000 perm   5726 sec   (492 perm/sec)   p_kst 3.546099e-07   p_cons 8.769255e-01   p_joint 1.063830e-05

Joint ci ratio: 7.040488e-01	ci left: 7.152263e-06	ci right 1.513313e-05	k: 30	n:2830000
Cons ci ratio: 8.729604e-04	ci left: 8.765428e-01	ci right 8.773087e-01	k: 2481701	n:2830000
KS ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
APC   2830000 perm   5758 sec   (492 perm/sec)   p_kst 3.533569e-07   p_cons 8.769261e-01   p_joint 1.060071e-05

Joint ci ratio: 7.040488e-01	ci left: 7.127079e-06	ci right 1.507985e-05	k: 30	n:2840000
Cons ci ratio: 8.713671e-04	ci left: 8.765572e-01	ci right 8.773216e-01	k: 2490509	n:2840000
KS ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
APC   2840000 perm   5788 sec   (491 perm/sec)   p_kst 3.521127e-07   p_cons 8.769398e-01   p_joint 1.056338e-05

Joint ci ratio: 7.040488e-01	ci left: 7.102072e-06	ci right 1.502694e-05	k: 30	n:2850000
Cons ci ratio: 8.698347e-04	ci left: 8.765584e-01	ci right 8.773215e-01	k: 2499280	n:2850000
KS ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
APC   2850000 perm   5819 sec   (490 perm/sec)   p_kst 3.508772e-07   p_cons 8.769404e-01   p_joint 1.052632e-05

Joint ci ratio: 7.040488e-01	ci left: 7.077240e-06	ci right 1.497439e-05	k: 30	n:2860000
Cons ci ratio: 8.683470e-04	ci left: 8.765505e-01	ci right 8.773123e-01	k: 2508025	n:2860000
KS ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
APC   2860000 perm   5850 sec   (489 perm/sec)   p_kst 3.496503e-07   p_cons 8.769318e-01   p_joint 1.048951e-05

Joint ci ratio: 7.040489e-01	ci left: 7.052580e-06	ci right 1.492222e-05	k: 30	n:2870000
Cons ci ratio: 8.668082e-04	ci left: 8.765574e-01	ci right 8.773178e-01	k: 2516812	n:2870000
KS ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
APC   2870000 perm   5880 sec   (488 perm/sec)   p_kst 3.484321e-07   p_cons 8.769380e-01   p_joint 1.045296e-05

Joint ci ratio: 7.040489e-01	ci left: 7.028092e-06	ci right 1.487041e-05	k: 30	n:2880000
Cons ci ratio: 8.653401e-04	ci left: 8.765485e-01	ci right 8.773077e-01	k: 2525554	n:2880000
KS ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
APC   2880000 perm   5911 sec   (487 perm/sec)   p_kst 3.472222e-07   p_cons 8.769285e-01   p_joint 1.041667e-05

Joint ci ratio: 7.040489e-01	ci left: 7.003773e-06	ci right 1.481895e-05	k: 30	n:2890000
Cons ci ratio: 8.639127e-04	ci left: 8.765314e-01	ci right 8.772893e-01	k: 2534272	n:2890000
KS ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
APC   2890000 perm   5942 sec   (486 perm/sec)   p_kst 3.460208e-07   p_cons 8.769107e-01   p_joint 1.038062e-05

Joint ci ratio: 7.040489e-01	ci left: 6.979622e-06	ci right 1.476785e-05	k: 30	n:2900000
Cons ci ratio: 8.624207e-04	ci left: 8.765324e-01	ci right 8.772890e-01	k: 2543042	n:2900000
KS ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
APC   2900000 perm   5973 sec   (486 perm/sec)   p_kst 3.448276e-07   p_cons 8.769110e-01   p_joint 1.034483e-05

Joint ci ratio: 7.040489e-01	ci left: 6.955637e-06	ci right 1.471710e-05	k: 30	n:2910000
Cons ci ratio: 8.609322e-04	ci left: 8.765344e-01	ci right 8.772896e-01	k: 2551815	n:2910000
KS ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
APC   2910000 perm   6004 sec   (485 perm/sec)   p_kst 3.436426e-07   p_cons 8.769124e-01   p_joint 1.030928e-05

Joint ci ratio: 7.040489e-01	ci left: 6.931817e-06	ci right 1.466670e-05	k: 30	n:2920000
Cons ci ratio: 8.594938e-04	ci left: 8.765257e-01	ci right 8.772797e-01	k: 2560557	n:2920000
KS ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
APC   2920000 perm   6035 sec   (484 perm/sec)   p_kst 3.424658e-07   p_cons 8.769031e-01   p_joint 1.027397e-05

Joint ci ratio: 7.040489e-01	ci left: 6.908158e-06	ci right 1.461665e-05	k: 30	n:2930000
Cons ci ratio: 8.579526e-04	ci left: 8.765448e-01	ci right 8.772975e-01	k: 2569380	n:2930000
KS ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
APC   2930000 perm   6073 sec   (482 perm/sec)   p_kst 3.412969e-07   p_cons 8.769215e-01   p_joint 1.023891e-05

Joint ci ratio: 7.040490e-01	ci left: 6.884661e-06	ci right 1.456693e-05	k: 30	n:2940000
Cons ci ratio: 8.565047e-04	ci left: 8.765423e-01	ci right 8.772937e-01	k: 2578140	n:2940000
KS ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
APC   2940000 perm   6104 sec   (482 perm/sec)   p_kst 3.401361e-07   p_cons 8.769184e-01   p_joint 1.020408e-05

Joint ci ratio: 7.040490e-01	ci left: 6.861323e-06	ci right 1.451755e-05	k: 30	n:2950000
Cons ci ratio: 8.550426e-04	ci left: 8.765452e-01	ci right 8.772954e-01	k: 2586916	n:2950000
KS ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
APC   2950000 perm   6135 sec   (481 perm/sec)   p_kst 3.389831e-07   p_cons 8.769207e-01   p_joint 1.016949e-05

Joint ci ratio: 7.040490e-01	ci left: 6.838143e-06	ci right 1.446850e-05	k: 30	n:2960000
Cons ci ratio: 8.535946e-04	ci left: 8.765465e-01	ci right 8.772953e-01	k: 2595687	n:2960000
KS ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
APC   2960000 perm   6167 sec   (480 perm/sec)   p_kst 3.378378e-07   p_cons 8.769213e-01   p_joint 1.013514e-05

Joint ci ratio: 7.156871e-01	ci left: 6.539321e-06	ci right 1.402315e-05	k: 29	n:2970000
Cons ci ratio: 8.521686e-04	ci left: 8.765440e-01	ci right 8.772916e-01	k: 2604447	n:2970000
KS ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
APC   2970000 perm   6199 sec   (479 perm/sec)   p_kst 3.367003e-07   p_cons 8.769182e-01   p_joint 9.764310e-06

Joint ci ratio: 7.156871e-01	ci left: 6.517377e-06	ci right 1.397609e-05	k: 29	n:2980000
Cons ci ratio: 8.507048e-04	ci left: 8.765530e-01	ci right 8.772993e-01	k: 2613241	n:2980000
KS ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
APC   2980000 perm   6230 sec   (478 perm/sec)   p_kst 3.355705e-07   p_cons 8.769265e-01   p_joint 9.731544e-06

Joint ci ratio: 7.156871e-01	ci left: 6.495580e-06	ci right 1.392935e-05	k: 29	n:2990000
Cons ci ratio: 8.492222e-04	ci left: 8.765686e-01	ci right 8.773136e-01	k: 2622055	n:2990000
KS ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
APC   2990000 perm   6261 sec   (478 perm/sec)   p_kst 3.344482e-07   p_cons 8.769415e-01   p_joint 9.698997e-06

Joint ci ratio: 7.156871e-01	ci left: 6.473928e-06	ci right 1.388292e-05	k: 29	n:3000000
Cons ci ratio: 8.478585e-04	ci left: 8.765557e-01	ci right 8.772996e-01	k: 2630784	n:3000000
KS ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
APC   3000000 perm   6294 sec   (477 perm/sec)   p_kst 3.333333e-07   p_cons 8.769280e-01   p_joint 9.666667e-06

Joint ci ratio: 7.156871e-01	ci left: 6.452420e-06	ci right 1.383679e-05	k: 29	n:3010000
Cons ci ratio: 8.464011e-04	ci left: 8.765686e-01	ci right 8.773111e-01	k: 2639590	n:3010000
KS ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
APC   3010000 perm   6326 sec   (476 perm/sec)   p_kst 3.322259e-07   p_cons 8.769402e-01   p_joint 9.634551e-06

Joint ci ratio: 7.156871e-01	ci left: 6.431054e-06	ci right 1.379098e-05	k: 29	n:3020000
Cons ci ratio: 8.449252e-04	ci left: 8.765879e-01	ci right 8.773292e-01	k: 2648416	n:3020000
KS ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
APC   3020000 perm   6358 sec   (475 perm/sec)   p_kst 3.311258e-07   p_cons 8.769589e-01   p_joint 9.602649e-06

Joint ci ratio: 7.408068e-01	ci left: 5.872341e-06	ci right 1.296485e-05	k: 27	n:3030000
Cons ci ratio: 8.434996e-04	ci left: 8.765963e-01	ci right 8.773363e-01	k: 2657209	n:3030000
KS ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
APC   3030000 perm   6390 sec   (474 perm/sec)   p_kst 3.300330e-07   p_cons 8.769667e-01   p_joint 8.910891e-06

Joint ci ratio: 7.279221e-01	ci left: 6.120336e-06	ci right 1.331175e-05	k: 28	n:3040000
Cons ci ratio: 8.421518e-04	ci left: 8.765865e-01	ci right 8.773253e-01	k: 2665947	n:3040000
KS ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
APC   3040000 perm   6423 sec   (473 perm/sec)   p_kst 3.289474e-07   p_cons 8.769562e-01   p_joint 9.210526e-06

Joint ci ratio: 7.279221e-01	ci left: 6.100270e-06	ci right 1.326810e-05	k: 28	n:3050000
Cons ci ratio: 8.407746e-04	ci left: 8.765859e-01	ci right 8.773235e-01	k: 2674713	n:3050000
KS ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
APC   3050000 perm   6454 sec   (473 perm/sec)   p_kst 3.278689e-07   p_cons 8.769551e-01   p_joint 9.180328e-06

Joint ci ratio: 7.408069e-01	ci left: 5.814769e-06	ci right 1.283775e-05	k: 27	n:3060000
Cons ci ratio: 8.394144e-04	ci left: 8.765827e-01	ci right 8.773192e-01	k: 2683471	n:3060000
KS ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
APC   3060000 perm   6487 sec   (472 perm/sec)   p_kst 3.267974e-07   p_cons 8.769513e-01   p_joint 8.823529e-06

Joint ci ratio: 7.408069e-01	ci left: 5.795829e-06	ci right 1.279593e-05	k: 27	n:3070000
Cons ci ratio: 8.380556e-04	ci left: 8.765809e-01	ci right 8.773161e-01	k: 2692233	n:3070000
KS ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
APC   3070000 perm   6520 sec   (471 perm/sec)   p_kst 3.257329e-07   p_cons 8.769489e-01   p_joint 8.794788e-06

Joint ci ratio: 7.408069e-01	ci left: 5.777011e-06	ci right 1.275438e-05	k: 27	n:3080000
Cons ci ratio: 8.366997e-04	ci left: 8.765800e-01	ci right 8.773141e-01	k: 2700998	n:3080000
KS ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
APC   3080000 perm   6553 sec   (470 perm/sec)   p_kst 3.246753e-07   p_cons 8.769474e-01   p_joint 8.766234e-06

Joint ci ratio: 7.408069e-01	ci left: 5.758315e-06	ci right 1.271311e-05	k: 27	n:3090000
Cons ci ratio: 8.352626e-04	ci left: 8.766019e-01	ci right 8.773347e-01	k: 2709833	n:3090000
KS ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
APC   3090000 perm   6585 sec   (469 perm/sec)   p_kst 3.236246e-07   p_cons 8.769686e-01   p_joint 8.737864e-06

Joint ci ratio: 7.408069e-01	ci left: 5.739740e-06	ci right 1.267210e-05	k: 27	n:3100000
Cons ci ratio: 8.339364e-04	ci left: 8.765967e-01	ci right 8.773284e-01	k: 2718585	n:3100000
KS ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
APC   3100000 perm   6618 sec   (468 perm/sec)   p_kst 3.225806e-07   p_cons 8.769629e-01   p_joint 8.709677e-06

Joint ci ratio: 7.408069e-01	ci left: 5.721284e-06	ci right 1.263135e-05	k: 27	n:3110000
Cons ci ratio: 8.325830e-04	ci left: 8.766003e-01	ci right 8.773308e-01	k: 2727364	n:3110000
KS ci ratio: 2.771857e+00	ci left: 8.140774e-09	ci right 1.791524e-06	k: 1	n:3110000
APC   3110000 perm   6650 sec   (468 perm/sec)   p_kst 3.215434e-07   p_cons 8.769659e-01   p_joint 8.681672e-06

Joint ci ratio: 7.408069e-01	ci left: 5.702947e-06	ci right 1.259087e-05	k: 27	n:3120000
Cons ci ratio: 8.312447e-04	ci left: 8.766017e-01	ci right 8.773310e-01	k: 2736136	n:3120000
KS ci ratio: 2.771857e+00	ci left: 8.114682e-09	ci right 1.785782e-06	k: 1	n:3120000
APC   3120000 perm   6682 sec   (467 perm/sec)   p_kst 3.205128e-07   p_cons 8.769667e-01   p_joint 8.653846e-06

Joint ci ratio: 7.408069e-01	ci left: 5.684726e-06	ci right 1.255064e-05	k: 27	n:3130000
Cons ci ratio: 8.299412e-04	ci left: 8.765956e-01	ci right 8.773238e-01	k: 2744885	n:3130000
KS ci ratio: 2.771857e+00	ci left: 8.088757e-09	ci right 1.780076e-06	k: 1	n:3130000
APC   3130000 perm   6715 sec   (466 perm/sec)   p_kst 3.194888e-07   p_cons 8.769601e-01   p_joint 8.626198e-06

Joint ci ratio: 7.408069e-01	ci left: 5.666622e-06	ci right 1.251067e-05	k: 27	n:3140000
Cons ci ratio: 8.285692e-04	ci left: 8.766091e-01	ci right 8.773361e-01	k: 2753695	n:3140000
KS ci ratio: 2.771857e+00	ci left: 8.062996e-09	ci right 1.774407e-06	k: 1	n:3140000
APC   3140000 perm   6749 sec   (465 perm/sec)   p_kst 3.184713e-07   p_cons 8.769729e-01   p_joint 8.598726e-06

Joint ci ratio: 7.408070e-01	ci left: 5.648633e-06	ci right 1.247095e-05	k: 27	n:3150000
Cons ci ratio: 8.272806e-04	ci left: 8.766025e-01	ci right 8.773283e-01	k: 2762442	n:3150000
KS ci ratio: 2.771857e+00	ci left: 8.037399e-09	ci right 1.768774e-06	k: 1	n:3150000
APC   3150000 perm   6782 sec   (464 perm/sec)   p_kst 3.174603e-07   p_cons 8.769657e-01   p_joint 8.571429e-06

Joint ci ratio: 7.408070e-01	ci left: 5.630757e-06	ci right 1.243149e-05	k: 27	n:3160000
Cons ci ratio: 8.259144e-04	ci left: 8.766177e-01	ci right 8.773423e-01	k: 2771258	n:3160000
KS ci ratio: 2.771857e+00	ci left: 8.011965e-09	ci right 1.763177e-06	k: 1	n:3160000
APC   3160000 perm   6815 sec   (464 perm/sec)   p_kst 3.164557e-07   p_cons 8.769804e-01   p_joint 8.544304e-06

Joint ci ratio: 7.408070e-01	ci left: 5.612995e-06	ci right 1.239227e-05	k: 27	n:3170000
Cons ci ratio: 8.246864e-04	ci left: 8.765985e-01	ci right 8.773220e-01	k: 2779965	n:3170000
KS ci ratio: 2.771857e+00	ci left: 7.986690e-09	ci right 1.757615e-06	k: 1	n:3170000
APC   3170000 perm   6848 sec   (463 perm/sec)   p_kst 3.154574e-07   p_cons 8.769606e-01   p_joint 8.517350e-06

Joint ci ratio: 7.408070e-01	ci left: 5.595344e-06	ci right 1.235330e-05	k: 27	n:3180000
Cons ci ratio: 8.233978e-04	ci left: 8.765966e-01	ci right 8.773190e-01	k: 2788727	n:3180000
KS ci ratio: 2.771857e+00	ci left: 7.961575e-09	ci right 1.752088e-06	k: 1	n:3180000
APC   3180000 perm   6881 sec   (462 perm/sec)   p_kst 3.144654e-07   p_cons 8.769582e-01   p_joint 8.490566e-06

Joint ci ratio: 7.408070e-01	ci left: 5.577803e-06	ci right 1.231458e-05	k: 27	n:3190000
Cons ci ratio: 8.221033e-04	ci left: 8.765980e-01	ci right 8.773192e-01	k: 2797499	n:3190000
KS ci ratio: 2.771857e+00	ci left: 7.936617e-09	ci right 1.746595e-06	k: 1	n:3190000
APC   3190000 perm   6914 sec   (461 perm/sec)   p_kst 3.134796e-07   p_cons 8.769589e-01   p_joint 8.463950e-06

Joint ci ratio: 7.408070e-01	ci left: 5.560373e-06	ci right 1.227610e-05	k: 27	n:3200000
Cons ci ratio: 8.208126e-04	ci left: 8.765999e-01	ci right 8.773200e-01	k: 2806273	n:3200000
KS ci ratio: 2.771857e+00	ci left: 7.911815e-09	ci right 1.741137e-06	k: 1	n:3200000
APC   3200000 perm   6948 sec   (461 perm/sec)   p_kst 3.125000e-07   p_cons 8.769603e-01   p_joint 8.437500e-06

Joint ci ratio: 7.408070e-01	ci left: 5.543051e-06	ci right 1.223785e-05	k: 27	n:3210000
Cons ci ratio: 8.195184e-04	ci left: 8.766043e-01	ci right 8.773233e-01	k: 2815055	n:3210000
KS ci ratio: 2.771857e+00	ci left: 7.887168e-09	ci right 1.735713e-06	k: 1	n:3210000
APC   3210000 perm   6984 sec   (460 perm/sec)   p_kst 3.115265e-07   p_cons 8.769642e-01   p_joint 8.411215e-06

Joint ci ratio: 7.279223e-01	ci left: 5.778205e-06	ci right 1.256761e-05	k: 28	n:3220000
Cons ci ratio: 8.182880e-04	ci left: 8.765935e-01	ci right 8.773114e-01	k: 2823788	n:3220000
KS ci ratio: 2.771857e+00	ci left: 7.862673e-09	ci right 1.730323e-06	k: 1	n:3220000
APC   3220000 perm   7017 sec   (459 perm/sec)   p_kst 3.105590e-07   p_cons 8.769528e-01   p_joint 8.695652e-06

Joint ci ratio: 7.279223e-01	ci left: 5.760316e-06	ci right 1.252871e-05	k: 28	n:3230000
Cons ci ratio: 8.170162e-04	ci left: 8.765951e-01	ci right 8.773119e-01	k: 2832561	n:3230000
KS ci ratio: 2.771857e+00	ci left: 7.838331e-09	ci right 1.724966e-06	k: 1	n:3230000
APC   3230000 perm   7051 sec   (458 perm/sec)   p_kst 3.095975e-07   p_cons 8.769539e-01   p_joint 8.668731e-06

Joint ci ratio: 7.279224e-01	ci left: 5.742537e-06	ci right 1.249004e-05	k: 28	n:3240000
Cons ci ratio: 8.157784e-04	ci left: 8.765893e-01	ci right 8.773050e-01	k: 2841310	n:3240000
KS ci ratio: 2.771857e+00	ci left: 7.814138e-09	ci right 1.719642e-06	k: 1	n:3240000
APC   3240000 perm   7085 sec   (457 perm/sec)   p_kst 3.086420e-07   p_cons 8.769475e-01   p_joint 8.641975e-06

Joint ci ratio: 7.279224e-01	ci left: 5.724868e-06	ci right 1.245161e-05	k: 28	n:3250000
Cons ci ratio: 8.145438e-04	ci left: 8.765842e-01	ci right 8.772988e-01	k: 2850061	n:3250000
KS ci ratio: 2.771857e+00	ci left: 7.790095e-09	ci right 1.714351e-06	k: 1	n:3250000
APC   3250000 perm   7118 sec   (457 perm/sec)   p_kst 3.076923e-07   p_cons 8.769418e-01   p_joint 8.615385e-06

Joint ci ratio: 7.279224e-01	ci left: 5.707307e-06	ci right 1.241341e-05	k: 28	n:3260000
Cons ci ratio: 8.133137e-04	ci left: 8.765794e-01	ci right 8.772929e-01	k: 2858813	n:3260000
KS ci ratio: 2.771857e+00	ci left: 7.766199e-09	ci right 1.709092e-06	k: 1	n:3260000
APC   3260000 perm   7155 sec   (456 perm/sec)   p_kst 3.067485e-07   p_cons 8.769365e-01   p_joint 8.588957e-06

Joint ci ratio: 7.279224e-01	ci left: 5.689853e-06	ci right 1.237545e-05	k: 28	n:3270000
Cons ci ratio: 8.120822e-04	ci left: 8.765765e-01	ci right 8.772889e-01	k: 2867571	n:3270000
KS ci ratio: 2.771857e+00	ci left: 7.742449e-09	ci right 1.703865e-06	k: 1	n:3270000
APC   3270000 perm   7200 sec   (454 perm/sec)   p_kst 3.058104e-07   p_cons 8.769330e-01   p_joint 8.562691e-06

Joint ci ratio: 7.279224e-01	ci left: 5.672506e-06	ci right 1.233772e-05	k: 28	n:3280000
Cons ci ratio: 8.108964e-04	ci left: 8.765629e-01	ci right 8.772743e-01	k: 2876294	n:3280000
KS ci ratio: 2.771857e+00	ci left: 7.718844e-09	ci right 1.698671e-06	k: 1	n:3280000
APC   3280000 perm   7235 sec   (453 perm/sec)   p_kst 3.048780e-07   p_cons 8.769189e-01   p_joint 8.536585e-06

Joint ci ratio: 7.279224e-01	ci left: 5.655265e-06	ci right 1.230022e-05	k: 28	n:3290000
Cons ci ratio: 8.097135e-04	ci left: 8.765500e-01	ci right 8.772603e-01	k: 2885019	n:3290000
KS ci ratio: 2.771857e+00	ci left: 7.695382e-09	ci right 1.693507e-06	k: 1	n:3290000
APC   3290000 perm   7269 sec   (453 perm/sec)   p_kst 3.039514e-07   p_cons 8.769055e-01   p_joint 8.510638e-06

Joint ci ratio: 7.156874e-01	ci left: 5.885388e-06	ci right 1.262084e-05	k: 29	n:3300000
Cons ci ratio: 8.085323e-04	ci left: 8.765381e-01	ci right 8.772473e-01	k: 2893747	n:3300000
KS ci ratio: 2.771857e+00	ci left: 7.672063e-09	ci right 1.688376e-06	k: 1	n:3300000
APC   3300000 perm   7302 sec   (452 perm/sec)   p_kst 3.030303e-07   p_cons 8.768930e-01   p_joint 8.787879e-06

Joint ci ratio: 7.156875e-01	ci left: 5.867607e-06	ci right 1.258271e-05	k: 29	n:3310000
Cons ci ratio: 8.072738e-04	ci left: 8.765483e-01	ci right 8.772565e-01	k: 2902548	n:3310000
KS ci ratio: 2.771857e+00	ci left: 7.648885e-09	ci right 1.683275e-06	k: 1	n:3310000
APC   3310000 perm   7337 sec   (451 perm/sec)   p_kst 3.021148e-07   p_cons 8.769027e-01   p_joint 8.761329e-06

Joint ci ratio: 7.040494e-01	ci left: 6.096657e-06	ci right 1.289963e-05	k: 30	n:3320000
Cons ci ratio: 8.060493e-04	ci left: 8.765509e-01	ci right 8.772580e-01	k: 2911324	n:3320000
KS ci ratio: 2.771857e+00	ci left: 7.625846e-09	ci right 1.678205e-06	k: 1	n:3320000
APC   3320000 perm   7371 sec   (450 perm/sec)   p_kst 3.012048e-07   p_cons 8.769048e-01   p_joint 9.036145e-06

Joint ci ratio: 7.040494e-01	ci left: 6.078349e-06	ci right 1.286090e-05	k: 30	n:3330000
Cons ci ratio: 8.048269e-04	ci left: 8.765545e-01	ci right 8.772605e-01	k: 2920103	n:3330000
KS ci ratio: 2.771857e+00	ci left: 7.602945e-09	ci right 1.673165e-06	k: 1	n:3330000
APC   3330000 perm   7406 sec   (450 perm/sec)   p_kst 3.003003e-07   p_cons 8.769078e-01   p_joint 9.009009e-06

Joint ci ratio: 7.040494e-01	ci left: 6.060150e-06	ci right 1.282239e-05	k: 30	n:3340000
Cons ci ratio: 8.036335e-04	ci left: 8.765517e-01	ci right 8.772567e-01	k: 2928861	n:3340000
KS ci ratio: 2.771857e+00	ci left: 7.580182e-09	ci right 1.668156e-06	k: 1	n:3340000
APC   3340000 perm   7441 sec   (449 perm/sec)   p_kst 2.994012e-07   p_cons 8.769045e-01   p_joint 8.982036e-06

Joint ci ratio: 7.040494e-01	ci left: 6.042060e-06	ci right 1.278411e-05	k: 30	n:3350000
Cons ci ratio: 8.024710e-04	ci left: 8.765420e-01	ci right 8.772460e-01	k: 2937596	n:3350000
KS ci ratio: 2.771857e+00	ci left: 7.557555e-09	ci right 1.663176e-06	k: 1	n:3350000
APC   3350000 perm   7476 sec   (448 perm/sec)   p_kst 2.985075e-07   p_cons 8.768943e-01   p_joint 8.955224e-06

Joint ci ratio: 7.040494e-01	ci left: 6.024078e-06	ci right 1.274607e-05	k: 30	n:3360000
Cons ci ratio: 8.012582e-04	ci left: 8.765473e-01	ci right 8.772502e-01	k: 2946381	n:3360000
KS ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
APC   3360000 perm   7510 sec   (447 perm/sec)   p_kst 2.976190e-07   p_cons 8.768991e-01   p_joint 8.928571e-06

Joint ci ratio: 7.040494e-01	ci left: 6.006202e-06	ci right 1.270824e-05	k: 30	n:3370000
Cons ci ratio: 8.000355e-04	ci left: 8.765568e-01	ci right 8.772586e-01	k: 2955180	n:3370000
KS ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
APC   3370000 perm   7546 sec   (447 perm/sec)   p_kst 2.967359e-07   p_cons 8.769080e-01   p_joint 8.902077e-06

Joint ci ratio: 7.040495e-01	ci left: 5.988432e-06	ci right 1.267065e-05	k: 30	n:3380000
Cons ci ratio: 7.988501e-04	ci left: 8.765576e-01	ci right 8.772584e-01	k: 2963950	n:3380000
KS ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
APC   3380000 perm   7582 sec   (446 perm/sec)   p_kst 2.958580e-07   p_cons 8.769083e-01   p_joint 8.875740e-06

Joint ci ratio: 7.040495e-01	ci left: 5.970767e-06	ci right 1.263327e-05	k: 30	n:3390000
Cons ci ratio: 7.976656e-04	ci left: 8.765595e-01	ci right 8.772593e-01	k: 2972724	n:3390000
KS ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
APC   3390000 perm   7617 sec   (445 perm/sec)   p_kst 2.949853e-07   p_cons 8.769097e-01   p_joint 8.849558e-06

Joint ci ratio: 7.040495e-01	ci left: 5.953206e-06	ci right 1.259611e-05	k: 30	n:3400000
Cons ci ratio: 7.964832e-04	ci left: 8.765624e-01	ci right 8.772611e-01	k: 2981501	n:3400000
KS ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
APC   3400000 perm   7653 sec   (444 perm/sec)   p_kst 2.941176e-07   p_cons 8.769121e-01   p_joint 8.823529e-06

Joint ci ratio: 6.929613e-01	ci left: 6.176840e-06	ci right 1.290380e-05	k: 31	n:3410000
Cons ci ratio: 7.953254e-04	ci left: 8.765599e-01	ci right 8.772576e-01	k: 2990260	n:3410000
KS ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
APC   3410000 perm   7689 sec   (443 perm/sec)   p_kst 2.932551e-07   p_cons 8.769091e-01   p_joint 9.090909e-06

Joint ci ratio: 6.929613e-01	ci left: 6.158779e-06	ci right 1.286606e-05	k: 31	n:3420000
Cons ci ratio: 7.941812e-04	ci left: 8.765551e-01	ci right 8.772518e-01	k: 2999011	n:3420000
KS ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
APC   3420000 perm   7725 sec   (443 perm/sec)   p_kst 2.923977e-07   p_cons 8.769038e-01   p_joint 9.064327e-06

Joint ci ratio: 6.929613e-01	ci left: 6.140823e-06	ci right 1.282855e-05	k: 31	n:3430000
Cons ci ratio: 7.929242e-04	ci left: 8.765825e-01	ci right 8.772781e-01	k: 3007872	n:3430000
KS ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
APC   3430000 perm   7760 sec   (442 perm/sec)   p_kst 2.915452e-07   p_cons 8.769306e-01   p_joint 9.037901e-06

Joint ci ratio: 6.929613e-01	ci left: 6.122972e-06	ci right 1.279126e-05	k: 31	n:3440000
Cons ci ratio: 7.917573e-04	ci left: 8.765867e-01	ci right 8.772813e-01	k: 3016654	n:3440000
KS ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
APC   3440000 perm   7796 sec   (441 perm/sec)   p_kst 2.906977e-07   p_cons 8.769343e-01   p_joint 9.011628e-06

Joint ci ratio: 6.929613e-01	ci left: 6.105224e-06	ci right 1.275419e-05	k: 31	n:3450000
Cons ci ratio: 7.905754e-04	ci left: 8.765964e-01	ci right 8.772899e-01	k: 3025455	n:3450000
KS ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
APC   3450000 perm   7832 sec   (440 perm/sec)   p_kst 2.898551e-07   p_cons 8.769435e-01   p_joint 8.985507e-06

Joint ci ratio: 6.929613e-01	ci left: 6.087579e-06	ci right 1.271732e-05	k: 31	n:3460000
Cons ci ratio: 7.894452e-04	ci left: 8.765933e-01	ci right 8.772859e-01	k: 3034212	n:3460000
KS ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
APC   3460000 perm   7869 sec   (440 perm/sec)   p_kst 2.890173e-07   p_cons 8.769399e-01   p_joint 8.959538e-06

Joint ci ratio: 6.929614e-01	ci left: 6.070035e-06	ci right 1.268068e-05	k: 31	n:3470000
Cons ci ratio: 7.883168e-04	ci left: 8.765911e-01	ci right 8.772827e-01	k: 3042972	n:3470000
KS ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
APC   3470000 perm   7906 sec   (439 perm/sec)   p_kst 2.881844e-07   p_cons 8.769372e-01   p_joint 8.933718e-06

Joint ci ratio: 6.929614e-01	ci left: 6.052593e-06	ci right 1.264424e-05	k: 31	n:3480000
Cons ci ratio: 7.871858e-04	ci left: 8.765909e-01	ci right 8.772815e-01	k: 3051739	n:3480000
KS ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
APC   3480000 perm   7962 sec   (437 perm/sec)   p_kst 2.873563e-07   p_cons 8.769365e-01   p_joint 8.908046e-06

Joint ci ratio: 6.929614e-01	ci left: 6.035250e-06	ci right 1.260801e-05	k: 31	n:3490000
Cons ci ratio: 7.860681e-04	ci left: 8.765884e-01	ci right 8.772780e-01	k: 3060498	n:3490000
KS ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
APC   3490000 perm   7998 sec   (436 perm/sec)   p_kst 2.865330e-07   p_cons 8.769335e-01   p_joint 8.882521e-06

Joint ci ratio: 6.929614e-01	ci left: 6.018007e-06	ci right 1.257198e-05	k: 31	n:3500000
Cons ci ratio: 7.849924e-04	ci left: 8.765756e-01	ci right 8.772643e-01	k: 3069221	n:3500000
KS ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
APC   3500000 perm   8036 sec   (436 perm/sec)   p_kst 2.857143e-07   p_cons 8.769203e-01   p_joint 8.857143e-06

Joint ci ratio: 6.929614e-01	ci left: 6.000861e-06	ci right 1.253617e-05	k: 31	n:3510000
Cons ci ratio: 7.838550e-04	ci left: 8.765812e-01	ci right 8.772689e-01	k: 3078008	n:3510000
KS ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
APC   3510000 perm   8074 sec   (435 perm/sec)   p_kst 2.849003e-07   p_cons 8.769254e-01   p_joint 8.831909e-06

Joint ci ratio: 6.929614e-01	ci left: 5.983813e-06	ci right 1.250055e-05	k: 31	n:3520000
Cons ci ratio: 7.827606e-04	ci left: 8.765762e-01	ci right 8.772629e-01	k: 3086758	n:3520000
KS ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
APC   3520000 perm   8128 sec   (433 perm/sec)   p_kst 2.840909e-07   p_cons 8.769199e-01   p_joint 8.806818e-06

Joint ci ratio: 6.929614e-01	ci left: 5.966862e-06	ci right 1.246514e-05	k: 31	n:3530000
Cons ci ratio: 7.816482e-04	ci left: 8.765775e-01	ci right 8.772632e-01	k: 3095530	n:3530000
KS ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
APC   3530000 perm   8164 sec   (432 perm/sec)   p_kst 2.832861e-07   p_cons 8.769207e-01   p_joint 8.781870e-06

Joint ci ratio: 6.929614e-01	ci left: 5.950006e-06	ci right 1.242993e-05	k: 31	n:3540000
Cons ci ratio: 7.806029e-04	ci left: 8.765615e-01	ci right 8.772463e-01	k: 3104241	n:3540000
KS ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
APC   3540000 perm   8200 sec   (432 perm/sec)   p_kst 2.824859e-07   p_cons 8.769042e-01   p_joint 8.757062e-06

Joint ci ratio: 6.929614e-01	ci left: 5.933246e-06	ci right 1.239491e-05	k: 31	n:3550000
Cons ci ratio: 7.794681e-04	ci left: 8.765716e-01	ci right 8.772554e-01	k: 3113044	n:3550000
KS ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
APC   3550000 perm   8237 sec   (431 perm/sec)   p_kst 2.816901e-07   p_cons 8.769138e-01   p_joint 8.732394e-06

Joint ci ratio: 6.929614e-01	ci left: 5.916579e-06	ci right 1.236010e-05	k: 31	n:3560000
Cons ci ratio: 7.783788e-04	ci left: 8.765704e-01	ci right 8.772532e-01	k: 3121807	n:3560000
KS ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
APC   3560000 perm   8273 sec   (430 perm/sec)   p_kst 2.808989e-07   p_cons 8.769121e-01   p_joint 8.707865e-06

Joint ci ratio: 6.929614e-01	ci left: 5.900006e-06	ci right 1.232547e-05	k: 31	n:3570000
Cons ci ratio: 7.773172e-04	ci left: 8.765627e-01	ci right 8.772446e-01	k: 3130547	n:3570000
KS ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
APC   3570000 perm   8310 sec   (430 perm/sec)   p_kst 2.801120e-07   p_cons 8.769039e-01   p_joint 8.683473e-06

Joint ci ratio: 6.929615e-01	ci left: 5.883526e-06	ci right 1.229105e-05	k: 31	n:3580000
Cons ci ratio: 7.762620e-04	ci left: 8.765545e-01	ci right 8.772354e-01	k: 3139285	n:3580000
KS ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
APC   3580000 perm   8347 sec   (429 perm/sec)   p_kst 2.793296e-07   p_cons 8.768953e-01   p_joint 8.659218e-06

Joint ci ratio: 6.929615e-01	ci left: 5.867137e-06	ci right 1.225681e-05	k: 31	n:3590000
Cons ci ratio: 7.752461e-04	ci left: 8.765365e-01	ci right 8.772166e-01	k: 3147988	n:3590000
KS ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
APC   3590000 perm   8383 sec   (428 perm/sec)   p_kst 2.785515e-07   p_cons 8.768769e-01   p_joint 8.635097e-06

Joint ci ratio: 6.929615e-01	ci left: 5.850839e-06	ci right 1.222276e-05	k: 31	n:3600000
Cons ci ratio: 7.741923e-04	ci left: 8.765304e-01	ci right 8.772095e-01	k: 3156733	n:3600000
KS ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
APC   3600000 perm   8420 sec   (428 perm/sec)   p_kst 2.777778e-07   p_cons 8.768703e-01   p_joint 8.611111e-06

Joint ci ratio: 6.929615e-01	ci left: 5.834632e-06	ci right 1.218890e-05	k: 31	n:3610000
Cons ci ratio: 7.731120e-04	ci left: 8.765329e-01	ci right 8.772111e-01	k: 3165509	n:3610000
KS ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
APC   3610000 perm   8455 sec   (427 perm/sec)   p_kst 2.770083e-07   p_cons 8.768723e-01   p_joint 8.587258e-06

Joint ci ratio: 6.929615e-01	ci left: 5.818514e-06	ci right 1.215523e-05	k: 31	n:3620000
Cons ci ratio: 7.720303e-04	ci left: 8.765370e-01	ci right 8.772143e-01	k: 3174291	n:3620000
KS ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
APC   3620000 perm   8492 sec   (426 perm/sec)   p_kst 2.762431e-07   p_cons 8.768760e-01   p_joint 8.563536e-06

Joint ci ratio: 6.929615e-01	ci left: 5.802485e-06	ci right 1.212175e-05	k: 31	n:3630000
Cons ci ratio: 7.709610e-04	ci left: 8.765390e-01	ci right 8.772153e-01	k: 3183065	n:3630000
KS ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
APC   3630000 perm   8529 sec   (426 perm/sec)   p_kst 2.754821e-07   p_cons 8.768774e-01   p_joint 8.539945e-06

Joint ci ratio: 6.929615e-01	ci left: 5.786544e-06	ci right 1.208845e-05	k: 31	n:3640000
Cons ci ratio: 7.699040e-04	ci left: 8.765387e-01	ci right 8.772140e-01	k: 3191831	n:3640000
KS ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
APC   3640000 perm   8565 sec   (425 perm/sec)   p_kst 2.747253e-07   p_cons 8.768766e-01   p_joint 8.516484e-06

Joint ci ratio: 6.929615e-01	ci left: 5.770691e-06	ci right 1.205533e-05	k: 31	n:3650000
Cons ci ratio: 7.687811e-04	ci left: 8.765581e-01	ci right 8.772325e-01	k: 3200669	n:3650000
KS ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
APC   3650000 perm   8602 sec   (424 perm/sec)   p_kst 2.739726e-07   p_cons 8.768956e-01   p_joint 8.493151e-06

Joint ci ratio: 6.929615e-01	ci left: 5.754924e-06	ci right 1.202239e-05	k: 31	n:3660000
Cons ci ratio: 7.677922e-04	ci left: 8.765411e-01	ci right 8.772146e-01	k: 3209374	n:3660000
KS ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
APC   3660000 perm   8640 sec   (424 perm/sec)   p_kst 2.732240e-07   p_cons 8.768781e-01   p_joint 8.469945e-06

Joint ci ratio: 6.929615e-01	ci left: 5.739243e-06	ci right 1.198963e-05	k: 31	n:3670000
Cons ci ratio: 7.667550e-04	ci left: 8.765389e-01	ci right 8.772115e-01	k: 3218133	n:3670000
KS ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
APC   3670000 perm   8724 sec   (421 perm/sec)   p_kst 2.724796e-07   p_cons 8.768755e-01   p_joint 8.446866e-06

Joint ci ratio: 6.929615e-01	ci left: 5.723647e-06	ci right 1.195705e-05	k: 31	n:3680000
Cons ci ratio: 7.657315e-04	ci left: 8.765340e-01	ci right 8.772057e-01	k: 3226882	n:3680000
KS ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
APC   3680000 perm   8761 sec   (420 perm/sec)   p_kst 2.717391e-07   p_cons 8.768701e-01   p_joint 8.423913e-06

Joint ci ratio: 6.929615e-01	ci left: 5.708136e-06	ci right 1.192465e-05	k: 31	n:3690000
Cons ci ratio: 7.646756e-04	ci left: 8.765394e-01	ci right 8.772102e-01	k: 3235669	n:3690000
KS ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
APC   3690000 perm   8799 sec   (419 perm/sec)   p_kst 2.710027e-07   p_cons 8.768751e-01   p_joint 8.401084e-06

Joint ci ratio: 6.929616e-01	ci left: 5.692708e-06	ci right 1.189242e-05	k: 31	n:3700000
Cons ci ratio: 7.636060e-04	ci left: 8.765499e-01	ci right 8.772198e-01	k: 3244475	n:3700000
KS ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
APC   3700000 perm   8837 sec   (419 perm/sec)   p_kst 2.702703e-07   p_cons 8.768851e-01   p_joint 8.378378e-06

Joint ci ratio: 6.929616e-01	ci left: 5.677364e-06	ci right 1.186036e-05	k: 31	n:3710000
Cons ci ratio: 7.625370e-04	ci left: 8.765615e-01	ci right 8.772304e-01	k: 3253285	n:3710000
KS ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
APC   3710000 perm   8875 sec   (418 perm/sec)   p_kst 2.695418e-07   p_cons 8.768962e-01   p_joint 8.355795e-06

Joint ci ratio: 6.929616e-01	ci left: 5.662102e-06	ci right 1.182848e-05	k: 31	n:3720000
Cons ci ratio: 7.615578e-04	ci left: 8.765487e-01	ci right 8.772168e-01	k: 3262005	n:3720000
KS ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
APC   3720000 perm   8912 sec   (417 perm/sec)   p_kst 2.688172e-07   p_cons 8.768831e-01   p_joint 8.333333e-06

Joint ci ratio: 6.929616e-01	ci left: 5.646923e-06	ci right 1.179677e-05	k: 31	n:3730000
Cons ci ratio: 7.604993e-04	ci left: 8.765597e-01	ci right 8.772268e-01	k: 3270813	n:3730000
KS ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
APC   3730000 perm   8950 sec   (417 perm/sec)   p_kst 2.680965e-07   p_cons 8.768936e-01   p_joint 8.310992e-06

Joint ci ratio: 6.929616e-01	ci left: 5.631824e-06	ci right 1.176523e-05	k: 31	n:3740000
Cons ci ratio: 7.595035e-04	ci left: 8.765540e-01	ci right 8.772203e-01	k: 3279559	n:3740000
KS ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
APC   3740000 perm   8990 sec   (416 perm/sec)   p_kst 2.673797e-07   p_cons 8.768874e-01   p_joint 8.288770e-06

Joint ci ratio: 6.929616e-01	ci left: 5.616806e-06	ci right 1.173385e-05	k: 31	n:3750000
Cons ci ratio: 7.584376e-04	ci left: 8.765694e-01	ci right 8.772348e-01	k: 3288384	n:3750000
KS ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
APC   3750000 perm   9027 sec   (415 perm/sec)   p_kst 2.666667e-07   p_cons 8.769024e-01   p_joint 8.266667e-06

Joint ci ratio: 6.722713e-01	ci left: 6.041412e-06	ci right 1.232558e-05	k: 33	n:3760000
Cons ci ratio: 7.574647e-04	ci left: 8.765595e-01	ci right 8.772240e-01	k: 3297114	n:3760000
KS ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
APC   3760000 perm   9065 sec   (415 perm/sec)   p_kst 2.659574e-07   p_cons 8.768920e-01   p_joint 8.776596e-06

Joint ci ratio: 6.625978e-01	ci left: 6.245628e-06	ci right 1.260252e-05	k: 34	n:3770000
Cons ci ratio: 7.564696e-04	ci left: 8.765570e-01	ci right 8.772206e-01	k: 3305872	n:3770000
KS ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
APC   3770000 perm   9105 sec   (414 perm/sec)   p_kst 2.652520e-07   p_cons 8.768891e-01   p_joint 9.018568e-06

Joint ci ratio: 6.625978e-01	ci left: 6.229105e-06	ci right 1.256918e-05	k: 34	n:3780000
Cons ci ratio: 7.555441e-04	ci left: 8.765358e-01	ci right 8.771986e-01	k: 3314559	n:3780000
KS ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
APC   3780000 perm   9145 sec   (413 perm/sec)   p_kst 2.645503e-07   p_cons 8.768675e-01   p_joint 8.994709e-06

Joint ci ratio: 6.625978e-01	ci left: 6.212670e-06	ci right 1.253602e-05	k: 34	n:3790000
Cons ci ratio: 7.545289e-04	ci left: 8.765413e-01	ci right 8.772032e-01	k: 3323347	n:3790000
KS ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
APC   3790000 perm   9185 sec   (413 perm/sec)   p_kst 2.638522e-07   p_cons 8.768726e-01   p_joint 8.970976e-06

Joint ci ratio: 6.625978e-01	ci left: 6.196320e-06	ci right 1.250303e-05	k: 34	n:3800000
Cons ci ratio: 7.535425e-04	ci left: 8.765397e-01	ci right 8.772007e-01	k: 3332108	n:3800000
KS ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
APC   3800000 perm   9224 sec   (412 perm/sec)   p_kst 2.631579e-07   p_cons 8.768705e-01   p_joint 8.947368e-06

Joint ci ratio: 6.625978e-01	ci left: 6.180057e-06	ci right 1.247021e-05	k: 34	n:3810000
Cons ci ratio: 7.525719e-04	ci left: 8.765347e-01	ci right 8.771949e-01	k: 3340856	n:3810000
KS ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
APC   3810000 perm   9266 sec   (411 perm/sec)   p_kst 2.624672e-07   p_cons 8.768651e-01   p_joint 8.923885e-06

Joint ci ratio: 6.625978e-01	ci left: 6.163879e-06	ci right 1.243757e-05	k: 34	n:3820000
Cons ci ratio: 7.515950e-04	ci left: 8.765326e-01	ci right 8.771919e-01	k: 3349615	n:3820000
KS ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
APC   3820000 perm   9308 sec   (410 perm/sec)   p_kst 2.617801e-07   p_cons 8.768626e-01   p_joint 8.900524e-06

Joint ci ratio: 6.533302e-01	ci left: 6.365225e-06	ci right 1.270925e-05	k: 35	n:3830000
Cons ci ratio: 7.505874e-04	ci left: 8.765405e-01	ci right 8.771989e-01	k: 3358412	n:3830000
KS ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
APC   3830000 perm   9349 sec   (410 perm/sec)   p_kst 2.610966e-07   p_cons 8.768700e-01   p_joint 9.138381e-06

Joint ci ratio: 6.533302e-01	ci left: 6.348649e-06	ci right 1.267616e-05	k: 35	n:3840000
Cons ci ratio: 7.496336e-04	ci left: 8.765339e-01	ci right 8.771915e-01	k: 3367154	n:3840000
KS ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
APC   3840000 perm   9389 sec   (409 perm/sec)   p_kst 2.604167e-07   p_cons 8.768630e-01   p_joint 9.114583e-06

Joint ci ratio: 6.444408e-01	ci left: 6.549088e-06	ci right 1.294522e-05	k: 36	n:3850000
Cons ci ratio: 7.486798e-04	ci left: 8.765285e-01	ci right 8.771852e-01	k: 3375900	n:3850000
KS ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
APC   3850000 perm   9428 sec   (408 perm/sec)   p_kst 2.597403e-07   p_cons 8.768571e-01   p_joint 9.350649e-06

Joint ci ratio: 6.444409e-01	ci left: 6.532122e-06	ci right 1.291168e-05	k: 36	n:3860000
Cons ci ratio: 7.476920e-04	ci left: 8.765340e-01	ci right 8.771898e-01	k: 3384688	n:3860000
KS ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
APC   3860000 perm   9469 sec   (408 perm/sec)   p_kst 2.590674e-07   p_cons 8.768622e-01   p_joint 9.326425e-06

Joint ci ratio: 6.444409e-01	ci left: 6.515243e-06	ci right 1.287832e-05	k: 36	n:3870000
Cons ci ratio: 7.466857e-04	ci left: 8.765459e-01	ci right 8.772009e-01	k: 3393501	n:3870000
KS ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
APC   3870000 perm   9509 sec   (407 perm/sec)   p_kst 2.583979e-07   p_cons 8.768736e-01   p_joint 9.302326e-06

Joint ci ratio: 6.444409e-01	ci left: 6.498451e-06	ci right 1.284513e-05	k: 36	n:3880000
Cons ci ratio: 7.456861e-04	ci left: 8.765569e-01	ci right 8.772111e-01	k: 3402311	n:3880000
KS ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
APC   3880000 perm   9549 sec   (406 perm/sec)   p_kst 2.577320e-07   p_cons 8.768843e-01   p_joint 9.278351e-06

Joint ci ratio: 6.444409e-01	ci left: 6.481745e-06	ci right 1.281210e-05	k: 36	n:3890000
Cons ci ratio: 7.447082e-04	ci left: 8.765628e-01	ci right 8.772161e-01	k: 3411101	n:3890000
KS ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
APC   3890000 perm   9589 sec   (406 perm/sec)   p_kst 2.570694e-07   p_cons 8.768897e-01   p_joint 9.254499e-06

Joint ci ratio: 6.359048e-01	ci left: 6.679858e-06	ci right 1.307680e-05	k: 37	n:3900000
Cons ci ratio: 7.437581e-04	ci left: 8.765617e-01	ci right 8.772141e-01	k: 3419864	n:3900000
KS ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
APC   3900000 perm   9627 sec   (405 perm/sec)   p_kst 2.564103e-07   p_cons 8.768882e-01   p_joint 9.487179e-06

Joint ci ratio: 6.359048e-01	ci left: 6.662774e-06	ci right 1.304336e-05	k: 37	n:3910000
Cons ci ratio: 7.427570e-04	ci left: 8.765765e-01	ci right 8.772281e-01	k: 3428689	n:3910000
KS ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
APC   3910000 perm   9667 sec   (404 perm/sec)   p_kst 2.557545e-07   p_cons 8.769026e-01   p_joint 9.462916e-06

Joint ci ratio: 6.359048e-01	ci left: 6.645777e-06	ci right 1.301009e-05	k: 37	n:3920000
Cons ci ratio: 7.418195e-04	ci left: 8.765738e-01	ci right 8.772246e-01	k: 3437446	n:3920000
KS ci ratio: 2.771858e+00	ci left: 6.458624e-09	ci right 1.421337e-06	k: 1	n:3920000
APC   3920000 perm   9708 sec   (404 perm/sec)   p_kst 2.551020e-07   p_cons 8.768995e-01   p_joint 9.438776e-06

Joint ci ratio: 6.359048e-01	ci left: 6.628867e-06	ci right 1.297698e-05	k: 37	n:3930000
Cons ci ratio: 7.408664e-04	ci left: 8.765768e-01	ci right 8.772267e-01	k: 3446225	n:3930000
KS ci ratio: 2.771858e+00	ci left: 6.442190e-09	ci right 1.417720e-06	k: 1	n:3930000
APC   3930000 perm   9751 sec   (403 perm/sec)   p_kst 2.544529e-07   p_cons 8.769020e-01   p_joint 9.414758e-06

Joint ci ratio: 6.359048e-01	ci left: 6.612043e-06	ci right 1.294404e-05	k: 37	n:3940000
Cons ci ratio: 7.399196e-04	ci left: 8.765790e-01	ci right 8.772281e-01	k: 3455001	n:3940000
KS ci ratio: 2.771858e+00	ci left: 6.425839e-09	ci right 1.414122e-06	k: 1	n:3940000
APC   3940000 perm   9791 sec   (402 perm/sec)   p_kst 2.538071e-07   p_cons 8.769038e-01   p_joint 9.390863e-06

Joint ci ratio: 6.359048e-01	ci left: 6.595303e-06	ci right 1.291127e-05	k: 37	n:3950000
Cons ci ratio: 7.390127e-04	ci left: 8.765705e-01	ci right 8.772188e-01	k: 3463735	n:3950000
KS ci ratio: 2.771858e+00	ci left: 6.409572e-09	ci right 1.410542e-06	k: 1	n:3950000
APC   3950000 perm   9832 sec   (402 perm/sec)   p_kst 2.531646e-07   p_cons 8.768949e-01   p_joint 9.367089e-06

Joint ci ratio: 6.359048e-01	ci left: 6.578648e-06	ci right 1.287867e-05	k: 37	n:3960000
Cons ci ratio: 7.380635e-04	ci left: 8.765755e-01	ci right 8.772229e-01	k: 3472522	n:3960000
KS ci ratio: 2.771858e+00	ci left: 6.393386e-09	ci right 1.406980e-06	k: 1	n:3960000
APC   3960000 perm   9873 sec   (401 perm/sec)   p_kst 2.525253e-07   p_cons 8.768995e-01   p_joint 9.343434e-06

Joint ci ratio: 6.359048e-01	ci left: 6.562077e-06	ci right 1.284623e-05	k: 37	n:3970000
Cons ci ratio: 7.371109e-04	ci left: 8.765825e-01	ci right 8.772291e-01	k: 3481317	n:3970000
KS ci ratio: 2.771858e+00	ci left: 6.377281e-09	ci right 1.403436e-06	k: 1	n:3970000
APC   3970000 perm   9913 sec   (400 perm/sec)   p_kst 2.518892e-07   p_cons 8.769060e-01   p_joint 9.319899e-06

Joint ci ratio: 6.359049e-01	ci left: 6.545590e-06	ci right 1.281395e-05	k: 37	n:3980000
Cons ci ratio: 7.360901e-04	ci left: 8.766105e-01	ci right 8.772563e-01	k: 3490196	n:3980000
KS ci ratio: 2.771858e+00	ci left: 6.361258e-09	ci right 1.399910e-06	k: 1	n:3980000
APC   3980000 perm   9955 sec   (400 perm/sec)   p_kst 2.512563e-07   p_cons 8.769337e-01   p_joint 9.296482e-06

Joint ci ratio: 6.359049e-01	ci left: 6.529185e-06	ci right 1.278184e-05	k: 37	n:3990000
Cons ci ratio: 7.351760e-04	ci left: 8.766083e-01	ci right 8.772533e-01	k: 3498955	n:3990000
KS ci ratio: 2.771858e+00	ci left: 6.345315e-09	ci right 1.396401e-06	k: 1	n:3990000
APC   3990000 perm   9997 sec   (399 perm/sec)   p_kst 2.506266e-07   p_cons 8.769311e-01   p_joint 9.273183e-06

Joint ci ratio: 6.359049e-01	ci left: 6.512862e-06	ci right 1.274988e-05	k: 37	n:4000000
Cons ci ratio: 7.342312e-04	ci left: 8.766162e-01	ci right 8.772603e-01	k: 3507754	n:4000000
KS ci ratio: 2.771858e+00	ci left: 6.329452e-09	ci right 1.392910e-06	k: 1	n:4000000
APC   4000000 perm   10038 sec   (398 perm/sec)   p_kst 2.500000e-07   p_cons 8.769385e-01   p_joint 9.250000e-06

Joint ci ratio: 6.359049e-01	ci left: 6.496620e-06	ci right 1.271809e-05	k: 37	n:4010000
Cons ci ratio: 7.333315e-04	ci left: 8.766117e-01	ci right 8.772551e-01	k: 3516504	n:4010000
KS ci ratio: 2.771858e+00	ci left: 6.313668e-09	ci right 1.389436e-06	k: 1	n:4010000
APC   4010000 perm   10084 sec   (398 perm/sec)   p_kst 2.493766e-07   p_cons 8.769337e-01   p_joint 9.226933e-06

Joint ci ratio: 6.359049e-01	ci left: 6.480459e-06	ci right 1.268645e-05	k: 37	n:4020000
Cons ci ratio: 7.324259e-04	ci left: 8.766101e-01	ci right 8.772526e-01	k: 3525265	n:4020000
KS ci ratio: 2.771858e+00	ci left: 6.297962e-09	ci right 1.385980e-06	k: 1	n:4020000
APC   4020000 perm   10126 sec   (397 perm/sec)   p_kst 2.487562e-07   p_cons 8.769316e-01   p_joint 9.203980e-06

Joint ci ratio: 6.359049e-01	ci left: 6.464379e-06	ci right 1.265497e-05	k: 37	n:4030000
Cons ci ratio: 7.315522e-04	ci left: 8.765999e-01	ci right 8.772417e-01	k: 3533992	n:4030000
KS ci ratio: 2.771858e+00	ci left: 6.282334e-09	ci right 1.382541e-06	k: 1	n:4030000
APC   4030000 perm   10169 sec   (396 perm/sec)   p_kst 2.481390e-07   p_cons 8.769211e-01   p_joint 9.181141e-06

Joint ci ratio: 6.359049e-01	ci left: 6.448378e-06	ci right 1.262365e-05	k: 37	n:4040000
Cons ci ratio: 7.306489e-04	ci left: 8.765995e-01	ci right 8.772405e-01	k: 3542758	n:4040000
KS ci ratio: 2.771858e+00	ci left: 6.266784e-09	ci right 1.379119e-06	k: 1	n:4040000
APC   4040000 perm   10213 sec   (396 perm/sec)   p_kst 2.475248e-07   p_cons 8.769203e-01   p_joint 9.158416e-06

Joint ci ratio: 6.359049e-01	ci left: 6.432456e-06	ci right 1.259248e-05	k: 37	n:4050000
Cons ci ratio: 7.297473e-04	ci left: 8.765996e-01	ci right 8.772398e-01	k: 3551526	n:4050000
KS ci ratio: 2.771858e+00	ci left: 6.251311e-09	ci right 1.375714e-06	k: 1	n:4050000
APC   4050000 perm   10256 sec   (395 perm/sec)   p_kst 2.469136e-07   p_cons 8.769200e-01   p_joint 9.135802e-06

Joint ci ratio: 6.359049e-01	ci left: 6.416612e-06	ci right 1.256146e-05	k: 37	n:4060000
Cons ci ratio: 7.288383e-04	ci left: 8.766030e-01	ci right 8.772423e-01	k: 3560307	n:4060000
KS ci ratio: 2.771858e+00	ci left: 6.235913e-09	ci right 1.372325e-06	k: 1	n:4060000
APC   4060000 perm   10302 sec   (394 perm/sec)   p_kst 2.463054e-07   p_cons 8.769229e-01   p_joint 9.113300e-06

Joint ci ratio: 6.359049e-01	ci left: 6.400847e-06	ci right 1.253060e-05	k: 37	n:4070000
Cons ci ratio: 7.279144e-04	ci left: 8.766117e-01	ci right 8.772502e-01	k: 3569110	n:4070000
KS ci ratio: 2.771858e+00	ci left: 6.220592e-09	ci right 1.368953e-06	k: 1	n:4070000
APC   4070000 perm   10345 sec   (393 perm/sec)   p_kst 2.457002e-07   p_cons 8.769312e-01   p_joint 9.090909e-06

Joint ci ratio: 6.359049e-01	ci left: 6.385158e-06	ci right 1.249989e-05	k: 37	n:4080000
Cons ci ratio: 7.270162e-04	ci left: 8.766137e-01	ci right 8.772515e-01	k: 3577886	n:4080000
KS ci ratio: 2.771858e+00	ci left: 6.205345e-09	ci right 1.365598e-06	k: 1	n:4080000
APC   4080000 perm   10388 sec   (393 perm/sec)   p_kst 2.450980e-07   p_cons 8.769328e-01   p_joint 9.068627e-06

Joint ci ratio: 6.444410e-01	ci left: 6.164789e-06	ci right 1.218560e-05	k: 36	n:4090000
Cons ci ratio: 7.261058e-04	ci left: 8.766204e-01	ci right 8.772573e-01	k: 3586681	n:4090000
KS ci ratio: 2.771858e+00	ci left: 6.190173e-09	ci right 1.362259e-06	k: 1	n:4090000
APC   4090000 perm   10437 sec   (392 perm/sec)   p_kst 2.444988e-07   p_cons 8.769391e-01   p_joint 8.801956e-06

Joint ci ratio: 6.444410e-01	ci left: 6.149753e-06	ci right 1.215588e-05	k: 36	n:4100000
Cons ci ratio: 7.251939e-04	ci left: 8.766285e-01	ci right 8.772647e-01	k: 3595482	n:4100000
KS ci ratio: 2.771858e+00	ci left: 6.175075e-09	ci right 1.358937e-06	k: 1	n:4100000
APC   4100000 perm   10480 sec   (391 perm/sec)   p_kst 2.439024e-07   p_cons 8.769468e-01   p_joint 8.780488e-06

Joint ci ratio: 6.444411e-01	ci left: 6.134790e-06	ci right 1.212630e-05	k: 36	n:4110000
Cons ci ratio: 7.242992e-04	ci left: 8.766324e-01	ci right 8.772678e-01	k: 3604266	n:4110000
KS ci ratio: 2.771858e+00	ci left: 6.160051e-09	ci right 1.355630e-06	k: 1	n:4110000
APC   4110000 perm   10531 sec   (390 perm/sec)   p_kst 2.433090e-07   p_cons 8.769504e-01   p_joint 8.759124e-06

Joint ci ratio: 6.444411e-01	ci left: 6.119900e-06	ci right 1.209687e-05	k: 36	n:4120000
Cons ci ratio: 7.233965e-04	ci left: 8.766397e-01	ci right 8.772743e-01	k: 3613064	n:4120000
KS ci ratio: 2.771858e+00	ci left: 6.145099e-09	ci right 1.352340e-06	k: 1	n:4120000
APC   4120000 perm   10575 sec   (390 perm/sec)   p_kst 2.427184e-07   p_cons 8.769573e-01   p_joint 8.737864e-06

Joint ci ratio: 6.444411e-01	ci left: 6.105082e-06	ci right 1.206758e-05	k: 36	n:4130000
Cons ci ratio: 7.224955e-04	ci left: 8.766475e-01	ci right 8.772813e-01	k: 3621864	n:4130000
KS ci ratio: 2.771858e+00	ci left: 6.130220e-09	ci right 1.349065e-06	k: 1	n:4130000
APC   4130000 perm   10621 sec   (389 perm/sec)   p_kst 2.421308e-07   p_cons 8.769646e-01   p_joint 8.716707e-06

Joint ci ratio: 6.444411e-01	ci left: 6.090335e-06	ci right 1.203843e-05	k: 36	n:4140000
Cons ci ratio: 7.216262e-04	ci left: 8.766467e-01	ci right 8.772798e-01	k: 3630629	n:4140000
KS ci ratio: 2.771858e+00	ci left: 6.115413e-09	ci right 1.345807e-06	k: 1	n:4140000
APC   4140000 perm   10664 sec   (388 perm/sec)   p_kst 2.415459e-07   p_cons 8.769635e-01   p_joint 8.695652e-06

Joint ci ratio: 6.444411e-01	ci left: 6.075660e-06	ci right 1.200942e-05	k: 36	n:4150000
Cons ci ratio: 7.207439e-04	ci left: 8.766508e-01	ci right 8.772831e-01	k: 3639414	n:4150000
KS ci ratio: 2.771858e+00	ci left: 6.100677e-09	ci right 1.342564e-06	k: 1	n:4150000
APC   4150000 perm   10710 sec   (387 perm/sec)   p_kst 2.409639e-07   p_cons 8.769672e-01   p_joint 8.674699e-06

Joint ci ratio: 6.444411e-01	ci left: 6.061055e-06	ci right 1.198055e-05	k: 36	n:4160000
Cons ci ratio: 7.198760e-04	ci left: 8.766515e-01	ci right 8.772831e-01	k: 3648185	n:4160000
KS ci ratio: 2.771858e+00	ci left: 6.086011e-09	ci right 1.339337e-06	k: 1	n:4160000
APC   4160000 perm   10755 sec   (387 perm/sec)   p_kst 2.403846e-07   p_cons 8.769675e-01   p_joint 8.653846e-06

Joint ci ratio: 6.444411e-01	ci left: 6.046520e-06	ci right 1.195182e-05	k: 36	n:4170000
Cons ci ratio: 7.190001e-04	ci left: 8.766556e-01	ci right 8.772863e-01	k: 3656970	n:4170000
KS ci ratio: 2.771858e+00	ci left: 6.071417e-09	ci right 1.336125e-06	k: 1	n:4170000
APC   4170000 perm   10809 sec   (386 perm/sec)   p_kst 2.398082e-07   p_cons 8.769712e-01   p_joint 8.633094e-06

Joint ci ratio: 6.444411e-01	ci left: 6.032054e-06	ci right 1.192323e-05	k: 36	n:4180000
Cons ci ratio: 7.181154e-04	ci left: 8.766632e-01	ci right 8.772932e-01	k: 3665770	n:4180000
KS ci ratio: 2.771858e+00	ci left: 6.056892e-09	ci right 1.332928e-06	k: 1	n:4180000
APC   4180000 perm   10853 sec   (385 perm/sec)   p_kst 2.392344e-07   p_cons 8.769785e-01   p_joint 8.612440e-06

Joint ci ratio: 6.444411e-01	ci left: 6.017658e-06	ci right 1.189477e-05	k: 36	n:4190000
Cons ci ratio: 7.173022e-04	ci left: 8.766503e-01	ci right 8.772795e-01	k: 3674484	n:4190000
KS ci ratio: 2.771858e+00	ci left: 6.042436e-09	ci right 1.329747e-06	k: 1	n:4190000
APC   4190000 perm   10907 sec   (384 perm/sec)   p_kst 2.386635e-07   p_cons 8.769652e-01   p_joint 8.591885e-06

Joint ci ratio: 6.444411e-01	ci left: 6.003330e-06	ci right 1.186645e-05	k: 36	n:4200000
Cons ci ratio: 7.164435e-04	ci left: 8.766519e-01	ci right 8.772804e-01	k: 3683259	n:4200000
KS ci ratio: 2.771858e+00	ci left: 6.028049e-09	ci right 1.326581e-06	k: 1	n:4200000
APC   4200000 perm   10952 sec   (383 perm/sec)   p_kst 2.380952e-07   p_cons 8.769664e-01   p_joint 8.571429e-06

Joint ci ratio: 6.444411e-01	ci left: 5.989070e-06	ci right 1.183826e-05	k: 36	n:4210000
Cons ci ratio: 7.155753e-04	ci left: 8.766574e-01	ci right 8.772851e-01	k: 3692050	n:4210000
KS ci ratio: 2.771858e+00	ci left: 6.013731e-09	ci right 1.323430e-06	k: 1	n:4210000
APC   4210000 perm   10998 sec   (383 perm/sec)   p_kst 2.375297e-07   p_cons 8.769715e-01   p_joint 8.551069e-06

Joint ci ratio: 6.444411e-01	ci left: 5.974878e-06	ci right 1.181021e-05	k: 36	n:4220000
Cons ci ratio: 7.147150e-04	ci left: 8.766614e-01	ci right 8.772884e-01	k: 3700835	n:4220000
KS ci ratio: 2.771858e+00	ci left: 5.999481e-09	ci right 1.320294e-06	k: 1	n:4220000
APC   4220000 perm   11048 sec   (382 perm/sec)   p_kst 2.369668e-07   p_cons 8.769751e-01   p_joint 8.530806e-06

Joint ci ratio: 6.444411e-01	ci left: 5.960753e-06	ci right 1.178229e-05	k: 36	n:4230000
Cons ci ratio: 7.138609e-04	ci left: 8.766644e-01	ci right 8.772907e-01	k: 3709616	n:4230000
KS ci ratio: 2.771858e+00	ci left: 5.985298e-09	ci right 1.317173e-06	k: 1	n:4230000
APC   4230000 perm   11093 sec   (381 perm/sec)   p_kst 2.364066e-07   p_cons 8.769778e-01   p_joint 8.510638e-06

Joint ci ratio: 6.444411e-01	ci left: 5.946695e-06	ci right 1.175450e-05	k: 36	n:4240000
Cons ci ratio: 7.130121e-04	ci left: 8.766667e-01	ci right 8.772922e-01	k: 3718394	n:4240000
KS ci ratio: 2.771858e+00	ci left: 5.971181e-09	ci right 1.314066e-06	k: 1	n:4240000
APC   4240000 perm   11144 sec   (380 perm/sec)   p_kst 2.358491e-07   p_cons 8.769797e-01   p_joint 8.490566e-06

Joint ci ratio: 6.444411e-01	ci left: 5.932703e-06	ci right 1.172685e-05	k: 36	n:4250000
Cons ci ratio: 7.121633e-04	ci left: 8.766699e-01	ci right 8.772947e-01	k: 3727176	n:4250000
KS ci ratio: 2.771858e+00	ci left: 5.957131e-09	ci right 1.310974e-06	k: 1	n:4250000
APC   4250000 perm   11188 sec   (380 perm/sec)   p_kst 2.352941e-07   p_cons 8.769826e-01   p_joint 8.470588e-06

Joint ci ratio: 6.444412e-01	ci left: 5.918776e-06	ci right 1.169932e-05	k: 36	n:4260000
Cons ci ratio: 7.113446e-04	ci left: 8.766649e-01	ci right 8.772890e-01	k: 3735923	n:4260000
KS ci ratio: 2.771858e+00	ci left: 5.943147e-09	ci right 1.307897e-06	k: 1	n:4260000
APC   4260000 perm   11238 sec   (379 perm/sec)   p_kst 2.347418e-07   p_cons 8.769772e-01   p_joint 8.450704e-06

Joint ci ratio: 6.444412e-01	ci left: 5.904915e-06	ci right 1.167192e-05	k: 36	n:4270000
Cons ci ratio: 7.105102e-04	ci left: 8.766656e-01	ci right 8.772889e-01	k: 3744694	n:4270000
KS ci ratio: 2.771858e+00	ci left: 5.929229e-09	ci right 1.304834e-06	k: 1	n:4270000
APC   4270000 perm   11283 sec   (378 perm/sec)   p_kst 2.341920e-07   p_cons 8.769775e-01   p_joint 8.430913e-06

Joint ci ratio: 6.444412e-01	ci left: 5.891118e-06	ci right 1.164465e-05	k: 36	n:4280000
Cons ci ratio: 7.096703e-04	ci left: 8.766688e-01	ci right 8.772914e-01	k: 3753476	n:4280000
KS ci ratio: 2.771858e+00	ci left: 5.915376e-09	ci right 1.301785e-06	k: 1	n:4280000
APC   4280000 perm   11328 sec   (378 perm/sec)   p_kst 2.336449e-07   p_cons 8.769804e-01   p_joint 8.411215e-06

Joint ci ratio: 6.444412e-01	ci left: 5.877386e-06	ci right 1.161750e-05	k: 36	n:4290000
Cons ci ratio: 7.088793e-04	ci left: 8.766580e-01	ci right 8.772799e-01	k: 3762198	n:4290000
KS ci ratio: 2.771858e+00	ci left: 5.901587e-09	ci right 1.298751e-06	k: 1	n:4290000
APC   4290000 perm   11376 sec   (377 perm/sec)   p_kst 2.331002e-07   p_cons 8.769692e-01   p_joint 8.391608e-06

Joint ci ratio: 6.444412e-01	ci left: 5.863718e-06	ci right 1.159049e-05	k: 36	n:4300000
Cons ci ratio: 7.080742e-04	ci left: 8.766524e-01	ci right 8.772736e-01	k: 3770942	n:4300000
KS ci ratio: 2.771858e+00	ci left: 5.887862e-09	ci right 1.295730e-06	k: 1	n:4300000
APC   4300000 perm   11420 sec   (377 perm/sec)   p_kst 2.325581e-07   p_cons 8.769633e-01   p_joint 8.372093e-06

Joint ci ratio: 6.444412e-01	ci left: 5.850113e-06	ci right 1.156360e-05	k: 36	n:4310000
Cons ci ratio: 7.072999e-04	ci left: 8.766382e-01	ci right 8.772587e-01	k: 3779649	n:4310000
KS ci ratio: 2.771858e+00	ci left: 5.874201e-09	ci right 1.292724e-06	k: 1	n:4310000
APC   4310000 perm   11469 sec   (376 perm/sec)   p_kst 2.320186e-07   p_cons 8.769487e-01   p_joint 8.352668e-06

Joint ci ratio: 6.444412e-01	ci left: 5.836571e-06	ci right 1.153683e-05	k: 36	n:4320000
Cons ci ratio: 7.064880e-04	ci left: 8.766364e-01	ci right 8.772562e-01	k: 3788409	n:4320000
KS ci ratio: 2.771858e+00	ci left: 5.860604e-09	ci right 1.289732e-06	k: 1	n:4320000
APC   4320000 perm   11517 sec   (375 perm/sec)   p_kst 2.314815e-07   p_cons 8.769465e-01   p_joint 8.333333e-06

Joint ci ratio: 6.444412e-01	ci left: 5.823091e-06	ci right 1.151018e-05	k: 36	n:4330000
Cons ci ratio: 7.056955e-04	ci left: 8.766295e-01	ci right 8.772485e-01	k: 3797147	n:4330000
KS ci ratio: 2.771858e+00	ci left: 5.847069e-09	ci right 1.286753e-06	k: 1	n:4330000
APC   4330000 perm   11565 sec   (374 perm/sec)   p_kst 2.309469e-07   p_cons 8.769393e-01   p_joint 8.314088e-06

Joint ci ratio: 6.444412e-01	ci left: 5.809674e-06	ci right 1.148366e-05	k: 36	n:4340000
Cons ci ratio: 7.048890e-04	ci left: 8.766277e-01	ci right 8.772460e-01	k: 3805907	n:4340000
KS ci ratio: 2.771858e+00	ci left: 5.833596e-09	ci right 1.283788e-06	k: 1	n:4340000
APC   4340000 perm   11614 sec   (374 perm/sec)   p_kst 2.304147e-07   p_cons 8.769371e-01   p_joint 8.294931e-06

Joint ci ratio: 6.444412e-01	ci left: 5.796319e-06	ci right 1.145726e-05	k: 36	n:4350000
Cons ci ratio: 7.040779e-04	ci left: 8.766282e-01	ci right 8.772458e-01	k: 3814677	n:4350000
KS ci ratio: 2.771858e+00	ci left: 5.820186e-09	ci right 1.280837e-06	k: 1	n:4350000
APC   4350000 perm   11665 sec   (373 perm/sec)   p_kst 2.298851e-07   p_cons 8.769372e-01   p_joint 8.275862e-06

Joint ci ratio: 6.444412e-01	ci left: 5.783024e-06	ci right 1.143099e-05	k: 36	n:4360000
Cons ci ratio: 7.032837e-04	ci left: 8.766243e-01	ci right 8.772413e-01	k: 3823428	n:4360000
KS ci ratio: 2.771858e+00	ci left: 5.806837e-09	ci right 1.277899e-06	k: 1	n:4360000
APC   4360000 perm   11709 sec   (372 perm/sec)   p_kst 2.293578e-07   p_cons 8.769330e-01   p_joint 8.256881e-06

Joint ci ratio: 6.444412e-01	ci left: 5.769791e-06	ci right 1.140483e-05	k: 36	n:4370000
Cons ci ratio: 7.024714e-04	ci left: 8.766269e-01	ci right 8.772431e-01	k: 3832207	n:4370000
KS ci ratio: 2.771858e+00	ci left: 5.793549e-09	ci right 1.274975e-06	k: 1	n:4370000
APC   4370000 perm   11756 sec   (372 perm/sec)   p_kst 2.288330e-07   p_cons 8.769352e-01   p_joint 8.237986e-06

Joint ci ratio: 6.276995e-01	ci left: 6.139519e-06	ci right 1.190819e-05	k: 38	n:4380000
Cons ci ratio: 7.016596e-04	ci left: 8.766301e-01	ci right 8.772456e-01	k: 3840989	n:4380000
KS ci ratio: 2.771858e+00	ci left: 5.780321e-09	ci right 1.272064e-06	k: 1	n:4380000
APC   4380000 perm   11801 sec   (371 perm/sec)   p_kst 2.283105e-07   p_cons 8.769381e-01   p_joint 8.675799e-06

Joint ci ratio: 6.276995e-01	ci left: 6.125534e-06	ci right 1.188107e-05	k: 38	n:4390000
Cons ci ratio: 7.008270e-04	ci left: 8.766406e-01	ci right 8.772554e-01	k: 3849803	n:4390000
KS ci ratio: 2.771858e+00	ci left: 5.767154e-09	ci right 1.269166e-06	k: 1	n:4390000
APC   4390000 perm   11846 sec   (371 perm/sec)   p_kst 2.277904e-07   p_cons 8.769483e-01   p_joint 8.656036e-06

Joint ci ratio: 6.444412e-01	ci left: 5.730451e-06	ci right 1.132707e-05	k: 36	n:4400000
Cons ci ratio: 7.000313e-04	ci left: 8.766407e-01	ci right 8.772548e-01	k: 3858571	n:4400000
KS ci ratio: 2.771858e+00	ci left: 5.754047e-09	ci right 1.266282e-06	k: 1	n:4400000
APC   4400000 perm   11894 sec   (370 perm/sec)   p_kst 2.272727e-07   p_cons 8.769480e-01   p_joint 8.181818e-06

Joint ci ratio: 6.444413e-01	ci left: 5.717457e-06	ci right 1.130138e-05	k: 36	n:4410000
Cons ci ratio: 6.993073e-04	ci left: 8.766193e-01	ci right 8.772328e-01	k: 3867245	n:4410000
KS ci ratio: 2.771858e+00	ci left: 5.741000e-09	ci right 1.263411e-06	k: 1	n:4410000
APC   4410000 perm   11941 sec   (369 perm/sec)   p_kst 2.267574e-07   p_cons 8.769263e-01   p_joint 8.163265e-06

Joint ci ratio: 6.444413e-01	ci left: 5.704522e-06	ci right 1.127581e-05	k: 36	n:4420000
Cons ci ratio: 6.984918e-04	ci left: 8.766271e-01	ci right 8.772398e-01	k: 3876047	n:4420000
KS ci ratio: 2.771858e+00	ci left: 5.728011e-09	ci right 1.260552e-06	k: 1	n:4420000
APC   4420000 perm   11989 sec   (369 perm/sec)   p_kst 2.262443e-07   p_cons 8.769337e-01   p_joint 8.144796e-06

Joint ci ratio: 6.444413e-01	ci left: 5.691645e-06	ci right 1.125036e-05	k: 36	n:4430000
Cons ci ratio: 6.977149e-04	ci left: 8.766237e-01	ci right 8.772358e-01	k: 3884800	n:4430000
KS ci ratio: 2.771858e+00	ci left: 5.715081e-09	ci right 1.257707e-06	k: 1	n:4430000
APC   4430000 perm   12034 sec   (368 perm/sec)   p_kst 2.257336e-07   p_cons 8.769300e-01   p_joint 8.126411e-06

Joint ci ratio: 6.444413e-01	ci left: 5.678825e-06	ci right 1.122502e-05	k: 36	n:4440000
Cons ci ratio: 6.969362e-04	ci left: 8.766218e-01	ci right 8.772331e-01	k: 3893559	n:4440000
KS ci ratio: 2.771858e+00	ci left: 5.702209e-09	ci right 1.254874e-06	k: 1	n:4440000
APC   4440000 perm   12078 sec   (368 perm/sec)   p_kst 2.252252e-07   p_cons 8.769277e-01   p_joint 8.108108e-06

Joint ci ratio: 6.444413e-01	ci left: 5.666064e-06	ci right 1.119980e-05	k: 36	n:4450000
Cons ci ratio: 6.961602e-04	ci left: 8.766198e-01	ci right 8.772305e-01	k: 3902318	n:4450000
KS ci ratio: 2.771858e+00	ci left: 5.689395e-09	ci right 1.252054e-06	k: 1	n:4450000
APC   4450000 perm   12123 sec   (367 perm/sec)   p_kst 2.247191e-07   p_cons 8.769254e-01   p_joint 8.089888e-06

Joint ci ratio: 6.444413e-01	ci left: 5.653360e-06	ci right 1.117469e-05	k: 36	n:4460000
Cons ci ratio: 6.953758e-04	ci left: 8.766212e-01	ci right 8.772312e-01	k: 3911092	n:4460000
KS ci ratio: 2.771858e+00	ci left: 5.676638e-09	ci right 1.249247e-06	k: 1	n:4460000
APC   4460000 perm   12180 sec   (366 perm/sec)   p_kst 2.242152e-07   p_cons 8.769265e-01   p_joint 8.071749e-06

Joint ci ratio: 6.444413e-01	ci left: 5.640713e-06	ci right 1.114969e-05	k: 36	n:4470000
Cons ci ratio: 6.946071e-04	ci left: 8.766186e-01	ci right 8.772279e-01	k: 3919848	n:4470000
KS ci ratio: 2.771858e+00	ci left: 5.663939e-09	ci right 1.246452e-06	k: 1	n:4470000
APC   4470000 perm   12225 sec   (366 perm/sec)   p_kst 2.237136e-07   p_cons 8.769235e-01   p_joint 8.053691e-06

Joint ci ratio: 6.444413e-01	ci left: 5.628122e-06	ci right 1.112480e-05	k: 36	n:4480000
Cons ci ratio: 6.938338e-04	ci left: 8.766182e-01	ci right 8.772268e-01	k: 3928614	n:4480000
KS ci ratio: 2.771858e+00	ci left: 5.651297e-09	ci right 1.243670e-06	k: 1	n:4480000
APC   4480000 perm   12272 sec   (365 perm/sec)   p_kst 2.232143e-07   p_cons 8.769228e-01   p_joint 8.035714e-06

Joint ci ratio: 6.444413e-01	ci left: 5.615587e-06	ci right 1.110002e-05	k: 36	n:4490000
Cons ci ratio: 6.930594e-04	ci left: 8.766189e-01	ci right 8.772269e-01	k: 3937385	n:4490000
KS ci ratio: 2.771858e+00	ci left: 5.638710e-09	ci right 1.240900e-06	k: 1	n:4490000
APC   4490000 perm   12318 sec   (365 perm/sec)   p_kst 2.227171e-07   p_cons 8.769232e-01   p_joint 8.017817e-06

Joint ci ratio: 6.444413e-01	ci left: 5.603108e-06	ci right 1.107536e-05	k: 36	n:4500000
Cons ci ratio: 6.922606e-04	ci left: 8.766281e-01	ci right 8.772354e-01	k: 3946194	n:4500000
KS ci ratio: 2.771858e+00	ci left: 5.626179e-09	ci right 1.238142e-06	k: 1	n:4500000
APC   4500000 perm   12364 sec   (364 perm/sec)   p_kst 2.222222e-07   p_cons 8.769320e-01   p_joint 8.000000e-06

Joint ci ratio: 6.444413e-01	ci left: 5.590684e-06	ci right 1.105080e-05	k: 36	n:4510000
Cons ci ratio: 6.914965e-04	ci left: 8.766273e-01	ci right 8.772339e-01	k: 3954958	n:4510000
KS ci ratio: 2.771858e+00	ci left: 5.613705e-09	ci right 1.235397e-06	k: 1	n:4510000
APC   4510000 perm   12410 sec   (363 perm/sec)   p_kst 2.217295e-07   p_cons 8.769308e-01   p_joint 7.982262e-06

Joint ci ratio: 6.359052e-01	ci left: 5.763594e-06	ci right 1.128309e-05	k: 37	n:4520000
Cons ci ratio: 6.907441e-04	ci left: 8.766236e-01	ci right 8.772295e-01	k: 3963709	n:4520000
KS ci ratio: 2.771858e+00	ci left: 5.601285e-09	ci right 1.232664e-06	k: 1	n:4520000
APC   4520000 perm   12459 sec   (363 perm/sec)   p_kst 2.212389e-07   p_cons 8.769268e-01   p_joint 8.185841e-06

Joint ci ratio: 6.359052e-01	ci left: 5.750870e-06	ci right 1.125818e-05	k: 37	n:4530000
Cons ci ratio: 6.900428e-04	ci left: 8.766046e-01	ci right 8.772099e-01	k: 3972391	n:4530000
KS ci ratio: 2.771858e+00	ci left: 5.588920e-09	ci right 1.229943e-06	k: 1	n:4530000
APC   4530000 perm   12506 sec   (362 perm/sec)   p_kst 2.207506e-07   p_cons 8.769075e-01   p_joint 8.167770e-06

Joint ci ratio: 6.359052e-01	ci left: 5.738203e-06	ci right 1.123338e-05	k: 37	n:4540000
Cons ci ratio: 6.892790e-04	ci left: 8.766060e-01	ci right 8.772107e-01	k: 3981165	n:4540000
KS ci ratio: 2.771858e+00	ci left: 5.576610e-09	ci right 1.227234e-06	k: 1	n:4540000
APC   4540000 perm   12555 sec   (362 perm/sec)   p_kst 2.202643e-07   p_cons 8.769086e-01   p_joint 8.149780e-06

Joint ci ratio: 6.359052e-01	ci left: 5.725592e-06	ci right 1.120869e-05	k: 37	n:4550000
Cons ci ratio: 6.885177e-04	ci left: 8.766074e-01	ci right 8.772114e-01	k: 3989939	n:4550000
KS ci ratio: 2.771858e+00	ci left: 5.564354e-09	ci right 1.224536e-06	k: 1	n:4550000
APC   4550000 perm   12602 sec   (361 perm/sec)   p_kst 2.197802e-07   p_cons 8.769097e-01   p_joint 8.131868e-06

Joint ci ratio: 6.359053e-01	ci left: 5.713036e-06	ci right 1.118411e-05	k: 37	n:4560000
Cons ci ratio: 6.877777e-04	ci left: 8.766029e-01	ci right 8.772062e-01	k: 3998686	n:4560000
KS ci ratio: 2.771858e+00	ci left: 5.552151e-09	ci right 1.221851e-06	k: 1	n:4560000
APC   4560000 perm   12650 sec   (360 perm/sec)   p_kst 2.192982e-07   p_cons 8.769048e-01   p_joint 8.114035e-06

Joint ci ratio: 6.359053e-01	ci left: 5.700535e-06	ci right 1.115964e-05	k: 37	n:4570000
Cons ci ratio: 6.870026e-04	ci left: 8.766103e-01	ci right 8.772129e-01	k: 4007487	n:4570000
KS ci ratio: 2.771858e+00	ci left: 5.540002e-09	ci right 1.219177e-06	k: 1	n:4570000
APC   4570000 perm   12696 sec   (360 perm/sec)   p_kst 2.188184e-07   p_cons 8.769118e-01   p_joint 8.096280e-06

Joint ci ratio: 6.359053e-01	ci left: 5.688088e-06	ci right 1.113527e-05	k: 37	n:4580000
Cons ci ratio: 6.862738e-04	ci left: 8.766038e-01	ci right 8.772058e-01	k: 4016225	n:4580000
KS ci ratio: 2.771858e+00	ci left: 5.527906e-09	ci right 1.216515e-06	k: 1	n:4580000
APC   4580000 perm   12742 sec   (359 perm/sec)   p_kst 2.183406e-07   p_cons 8.769050e-01   p_joint 8.078603e-06

Joint ci ratio: 6.359053e-01	ci left: 5.675696e-06	ci right 1.111101e-05	k: 37	n:4590000
Cons ci ratio: 6.855362e-04	ci left: 8.766008e-01	ci right 8.772022e-01	k: 4024979	n:4590000
KS ci ratio: 2.771858e+00	ci left: 5.515862e-09	ci right 1.213865e-06	k: 1	n:4590000
APC   4590000 perm   12789 sec   (359 perm/sec)   p_kst 2.178649e-07   p_cons 8.769017e-01   p_joint 8.061002e-06

Joint ci ratio: 6.359053e-01	ci left: 5.663357e-06	ci right 1.108686e-05	k: 37	n:4600000
Cons ci ratio: 6.847865e-04	ci left: 8.766025e-01	ci right 8.772032e-01	k: 4033754	n:4600000
KS ci ratio: 2.771858e+00	ci left: 5.503871e-09	ci right 1.211226e-06	k: 1	n:4600000
APC   4600000 perm   12834 sec   (358 perm/sec)   p_kst 2.173913e-07   p_cons 8.769030e-01   p_joint 8.043478e-06

Joint ci ratio: 6.276996e-01	ci left: 5.833208e-06	ci right 1.131408e-05	k: 38	n:4610000
Cons ci ratio: 6.840723e-04	ci left: 8.765937e-01	ci right 8.771937e-01	k: 4042481	n:4610000
KS ci ratio: 2.771858e+00	ci left: 5.491932e-09	ci right 1.208599e-06	k: 1	n:4610000
APC   4610000 perm   12881 sec   (358 perm/sec)   p_kst 2.169197e-07   p_cons 8.768939e-01   p_joint 8.242950e-06

Joint ci ratio: 6.198037e-01	ci left: 6.002780e-06	ci right 1.153987e-05	k: 39	n:4620000
Cons ci ratio: 6.832959e-04	ci left: 8.766053e-01	ci right 8.772047e-01	k: 4051302	n:4620000
KS ci ratio: 2.771858e+00	ci left: 5.480045e-09	ci right 1.205983e-06	k: 1	n:4620000
APC   4620000 perm   12930 sec   (357 perm/sec)   p_kst 2.164502e-07   p_cons 8.769052e-01   p_joint 8.441558e-06

Joint ci ratio: 6.198037e-01	ci left: 5.989815e-06	ci right 1.151495e-05	k: 39	n:4630000
Cons ci ratio: 6.825460e-04	ci left: 8.766093e-01	ci right 8.772080e-01	k: 4060088	n:4630000
KS ci ratio: 2.771858e+00	ci left: 5.468209e-09	ci right 1.203378e-06	k: 1	n:4630000
APC   4630000 perm   12978 sec   (357 perm/sec)   p_kst 2.159827e-07   p_cons 8.769089e-01   p_joint 8.423326e-06

Joint ci ratio: 6.198037e-01	ci left: 5.976906e-06	ci right 1.149013e-05	k: 39	n:4640000
Cons ci ratio: 6.818394e-04	ci left: 8.766003e-01	ci right 8.771984e-01	k: 4068814	n:4640000
KS ci ratio: 2.771858e+00	ci left: 5.456424e-09	ci right 1.200785e-06	k: 1	n:4640000
APC   4640000 perm   13029 sec   (356 perm/sec)   p_kst 2.155172e-07   p_cons 8.768996e-01   p_joint 8.405172e-06

Joint ci ratio: 6.198037e-01	ci left: 5.964052e-06	ci right 1.146542e-05	k: 39	n:4650000
Cons ci ratio: 6.811140e-04	ci left: 8.765980e-01	ci right 8.771955e-01	k: 4077571	n:4650000
KS ci ratio: 2.771858e+00	ci left: 5.444690e-09	ci right 1.198202e-06	k: 1	n:4650000
APC   4650000 perm   13075 sec   (356 perm/sec)   p_kst 2.150538e-07   p_cons 8.768970e-01   p_joint 8.387097e-06

Joint ci ratio: 6.198037e-01	ci left: 5.951254e-06	ci right 1.144082e-05	k: 39	n:4660000
Cons ci ratio: 6.803652e-04	ci left: 8.766039e-01	ci right 8.772007e-01	k: 4086366	n:4660000
KS ci ratio: 2.771858e+00	ci left: 5.433006e-09	ci right 1.195631e-06	k: 1	n:4660000
APC   4660000 perm   13123 sec   (355 perm/sec)   p_kst 2.145923e-07   p_cons 8.769026e-01   p_joint 8.369099e-06

Joint ci ratio: 6.198037e-01	ci left: 5.938510e-06	ci right 1.141632e-05	k: 39	n:4670000
Cons ci ratio: 6.796324e-04	ci left: 8.766055e-01	ci right 8.772017e-01	k: 4095141	n:4670000
KS ci ratio: 2.771858e+00	ci left: 5.421372e-09	ci right 1.193071e-06	k: 1	n:4670000
APC   4670000 perm   13170 sec   (355 perm/sec)   p_kst 2.141328e-07   p_cons 8.769039e-01   p_joint 8.351178e-06

Joint ci ratio: 6.198037e-01	ci left: 5.925821e-06	ci right 1.139192e-05	k: 39	n:4680000
Cons ci ratio: 6.789234e-04	ci left: 8.766003e-01	ci right 8.771958e-01	k: 4103884	n:4680000
KS ci ratio: 2.771858e+00	ci left: 5.409788e-09	ci right 1.190522e-06	k: 1	n:4680000
APC   4680000 perm   13216 sec   (354 perm/sec)   p_kst 2.136752e-07   p_cons 8.768983e-01   p_joint 8.333333e-06

Joint ci ratio: 6.198037e-01	ci left: 5.913186e-06	ci right 1.136763e-05	k: 39	n:4690000
Cons ci ratio: 6.782447e-04	ci left: 8.765861e-01	ci right 8.771810e-01	k: 4112585	n:4690000
KS ci ratio: 2.771858e+00	ci left: 5.398253e-09	ci right 1.187983e-06	k: 1	n:4690000
APC   4690000 perm   13265 sec   (354 perm/sec)   p_kst 2.132196e-07   p_cons 8.768838e-01   p_joint 8.315565e-06

Joint ci ratio: 6.121984e-01	ci left: 6.080132e-06	ci right 1.158906e-05	k: 40	n:4700000
Cons ci ratio: 6.774759e-04	ci left: 8.766014e-01	ci right 8.771956e-01	k: 4121424	n:4700000
KS ci ratio: 2.771858e+00	ci left: 5.386768e-09	ci right 1.185455e-06	k: 1	n:4700000
APC   4700000 perm   13312 sec   (353 perm/sec)   p_kst 2.127660e-07   p_cons 8.768987e-01   p_joint 8.510638e-06

Joint ci ratio: 6.121984e-01	ci left: 6.067223e-06	ci right 1.156445e-05	k: 40	n:4710000
Cons ci ratio: 6.767284e-04	ci left: 8.766106e-01	ci right 8.772042e-01	k: 4130235	n:4710000
KS ci ratio: 2.771858e+00	ci left: 5.375331e-09	ci right 1.182939e-06	k: 1	n:4710000
APC   4710000 perm   13359 sec   (353 perm/sec)   p_kst 2.123142e-07   p_cons 8.769076e-01   p_joint 8.492569e-06

Joint ci ratio: 6.121984e-01	ci left: 6.054368e-06	ci right 1.153995e-05	k: 40	n:4720000
Cons ci ratio: 6.760192e-04	ci left: 8.766084e-01	ci right 8.772014e-01	k: 4138992	n:4720000
KS ci ratio: 2.771858e+00	ci left: 5.363942e-09	ci right 1.180432e-06	k: 1	n:4720000
APC   4720000 perm   13407 sec   (352 perm/sec)   p_kst 2.118644e-07   p_cons 8.769051e-01   p_joint 8.474576e-06

Joint ci ratio: 6.121984e-01	ci left: 6.041568e-06	ci right 1.151555e-05	k: 40	n:4730000
Cons ci ratio: 6.752850e-04	ci left: 8.766148e-01	ci right 8.772072e-01	k: 4147790	n:4730000
KS ci ratio: 2.771858e+00	ci left: 5.352602e-09	ci right 1.177937e-06	k: 1	n:4730000
APC   4730000 perm   13455 sec   (352 perm/sec)   p_kst 2.114165e-07   p_cons 8.769112e-01   p_joint 8.456660e-06

Joint ci ratio: 6.121984e-01	ci left: 6.028822e-06	ci right 1.149126e-05	k: 40	n:4740000
Cons ci ratio: 6.745592e-04	ci left: 8.766193e-01	ci right 8.772110e-01	k: 4156579	n:4740000
KS ci ratio: 2.771858e+00	ci left: 5.341310e-09	ci right 1.175452e-06	k: 1	n:4740000
APC   4740000 perm   13504 sec   (351 perm/sec)   p_kst 2.109705e-07   p_cons 8.769154e-01   p_joint 8.438819e-06

Joint ci ratio: 6.048664e-01	ci left: 6.194177e-06	ci right 1.170969e-05	k: 41	n:4750000
Cons ci ratio: 6.738265e-04	ci left: 8.766268e-01	ci right 8.772178e-01	k: 4165382	n:4750000
KS ci ratio: 2.771858e+00	ci left: 5.330065e-09	ci right 1.172977e-06	k: 1	n:4750000
APC   4750000 perm   13551 sec   (351 perm/sec)   p_kst 2.105263e-07   p_cons 8.769225e-01   p_joint 8.631579e-06

Joint ci ratio: 6.048664e-01	ci left: 6.181164e-06	ci right 1.168509e-05	k: 41	n:4760000
Cons ci ratio: 6.731290e-04	ci left: 8.766236e-01	ci right 8.772141e-01	k: 4174135	n:4760000
KS ci ratio: 2.771858e+00	ci left: 5.318867e-09	ci right 1.170513e-06	k: 1	n:4760000
APC   4760000 perm   13598 sec   (350 perm/sec)   p_kst 2.100840e-07   p_cons 8.769191e-01   p_joint 8.613445e-06

Joint ci ratio: 6.048664e-01	ci left: 6.168206e-06	ci right 1.166060e-05	k: 41	n:4770000
Cons ci ratio: 6.724441e-04	ci left: 8.766172e-01	ci right 8.772071e-01	k: 4182872	n:4770000
KS ci ratio: 2.771858e+00	ci left: 5.307716e-09	ci right 1.168059e-06	k: 1	n:4770000
APC   4770000 perm   13647 sec   (350 perm/sec)   p_kst 2.096436e-07   p_cons 8.769124e-01   p_joint 8.595388e-06

Joint ci ratio: 5.909595e-01	ci left: 6.510324e-06	ci right 1.211729e-05	k: 43	n:4780000
Cons ci ratio: 6.717293e-04	ci left: 8.766210e-01	ci right 8.772103e-01	k: 4191658	n:4780000
KS ci ratio: 2.771858e+00	ci left: 5.296612e-09	ci right 1.165615e-06	k: 1	n:4780000
APC   4780000 perm   13696 sec   (349 perm/sec)   p_kst 2.092050e-07   p_cons 8.769159e-01   p_joint 8.995816e-06

Joint ci ratio: 5.909595e-01	ci left: 6.496732e-06	ci right 1.209199e-05	k: 43	n:4790000
Cons ci ratio: 6.709980e-04	ci left: 8.766309e-01	ci right 8.772195e-01	k: 4200473	n:4790000
KS ci ratio: 2.771858e+00	ci left: 5.285555e-09	ci right 1.163182e-06	k: 1	n:4790000
APC   4790000 perm   13742 sec   (349 perm/sec)   p_kst 2.087683e-07   p_cons 8.769255e-01   p_joint 8.977035e-06

Joint ci ratio: 5.909595e-01	ci left: 6.483198e-06	ci right 1.206680e-05	k: 43	n:4800000
Cons ci ratio: 6.702769e-04	ci left: 8.766383e-01	ci right 8.772263e-01	k: 4209276	n:4800000
KS ci ratio: 2.771858e+00	ci left: 5.274543e-09	ci right 1.160758e-06	k: 1	n:4800000
APC   4800000 perm   13791 sec   (348 perm/sec)   p_kst 2.083333e-07   p_cons 8.769325e-01   p_joint 8.958333e-06

Joint ci ratio: 5.843563e-01	ci left: 6.646674e-06	ci right 1.228022e-05	k: 44	n:4810000
Cons ci ratio: 6.695406e-04	ci left: 8.766512e-01	ci right 8.772386e-01	k: 4218106	n:4810000
KS ci ratio: 2.771858e+00	ci left: 5.263578e-09	ci right 1.158345e-06	k: 1	n:4810000
APC   4810000 perm   13838 sec   (348 perm/sec)   p_kst 2.079002e-07   p_cons 8.769451e-01   p_joint 9.147609e-06

Joint ci ratio: 5.843563e-01	ci left: 6.632885e-06	ci right 1.225474e-05	k: 44	n:4820000
Cons ci ratio: 6.688473e-04	ci left: 8.766510e-01	ci right 8.772377e-01	k: 4226873	n:4820000
KS ci ratio: 2.771858e+00	ci left: 5.252657e-09	ci right 1.155942e-06	k: 1	n:4820000
APC   4820000 perm   13887 sec   (347 perm/sec)   p_kst 2.074689e-07   p_cons 8.769446e-01   p_joint 9.128631e-06

Joint ci ratio: 5.843563e-01	ci left: 6.619152e-06	ci right 1.222937e-05	k: 44	n:4830000
Cons ci ratio: 6.681696e-04	ci left: 8.766465e-01	ci right 8.772326e-01	k: 4235619	n:4830000
KS ci ratio: 2.771858e+00	ci left: 5.241782e-09	ci right 1.153549e-06	k: 1	n:4830000
APC   4830000 perm   13934 sec   (347 perm/sec)   p_kst 2.070393e-07   p_cons 8.769398e-01   p_joint 9.109731e-06

Joint ci ratio: 5.843563e-01	ci left: 6.605476e-06	ci right 1.220410e-05	k: 44	n:4840000
Cons ci ratio: 6.674658e-04	ci left: 8.766510e-01	ci right 8.772365e-01	k: 4244409	n:4840000
KS ci ratio: 2.771858e+00	ci left: 5.230952e-09	ci right 1.151165e-06	k: 1	n:4840000
APC   4840000 perm   13983 sec   (346 perm/sec)   p_kst 2.066116e-07   p_cons 8.769440e-01   p_joint 9.090909e-06

Joint ci ratio: 5.843563e-01	ci left: 6.591856e-06	ci right 1.217894e-05	k: 44	n:4850000
Cons ci ratio: 6.667999e-04	ci left: 8.766440e-01	ci right 8.772289e-01	k: 4253143	n:4850000
KS ci ratio: 2.771858e+00	ci left: 5.220167e-09	ci right 1.148792e-06	k: 1	n:4850000
APC   4850000 perm   14030 sec   (346 perm/sec)   p_kst 2.061856e-07   p_cons 8.769367e-01   p_joint 9.072165e-06

Joint ci ratio: 5.843563e-01	ci left: 6.578293e-06	ci right 1.215388e-05	k: 44	n:4860000
Cons ci ratio: 6.661176e-04	ci left: 8.766430e-01	ci right 8.772273e-01	k: 4261906	n:4860000
KS ci ratio: 2.771858e+00	ci left: 5.209426e-09	ci right 1.146428e-06	k: 1	n:4860000
APC   4860000 perm   14077 sec   (345 perm/sec)   p_kst 2.057613e-07   p_cons 8.769354e-01   p_joint 9.053498e-06

Joint ci ratio: 5.843563e-01	ci left: 6.564785e-06	ci right 1.212892e-05	k: 44	n:4870000
Cons ci ratio: 6.654310e-04	ci left: 8.766440e-01	ci right 8.772278e-01	k: 4270679	n:4870000
KS ci ratio: 2.771858e+00	ci left: 5.198729e-09	ci right 1.144074e-06	k: 1	n:4870000
APC   4870000 perm   14127 sec   (345 perm/sec)   p_kst 2.053388e-07   p_cons 8.769361e-01   p_joint 9.034908e-06

Joint ci ratio: 5.843563e-01	ci left: 6.551333e-06	ci right 1.210407e-05	k: 44	n:4880000
Cons ci ratio: 6.647207e-04	ci left: 8.766535e-01	ci right 8.772366e-01	k: 4279493	n:4880000
KS ci ratio: 2.771858e+00	ci left: 5.188076e-09	ci right 1.141730e-06	k: 1	n:4880000
APC   4880000 perm   14179 sec   (344 perm/sec)   p_kst 2.049180e-07   p_cons 8.769453e-01   p_joint 9.016393e-06

Joint ci ratio: 5.843563e-01	ci left: 6.537935e-06	ci right 1.207932e-05	k: 44	n:4890000
Cons ci ratio: 6.640542e-04	ci left: 8.766494e-01	ci right 8.772319e-01	k: 4288241	n:4890000
KS ci ratio: 2.771858e+00	ci left: 5.177466e-09	ci right 1.139395e-06	k: 1	n:4890000
APC   4890000 perm   14230 sec   (344 perm/sec)   p_kst 2.044990e-07   p_cons 8.769409e-01   p_joint 8.997955e-06

Joint ci ratio: 5.843564e-01	ci left: 6.524593e-06	ci right 1.205466e-05	k: 44	n:4900000
Cons ci ratio: 6.634035e-04	ci left: 8.766408e-01	ci right 8.772228e-01	k: 4296967	n:4900000
KS ci ratio: 2.771858e+00	ci left: 5.166900e-09	ci right 1.137070e-06	k: 1	n:4900000
APC   4900000 perm   14280 sec   (343 perm/sec)   p_kst 2.040816e-07   p_cons 8.769320e-01   p_joint 8.979592e-06

Joint ci ratio: 5.843564e-01	ci left: 6.511304e-06	ci right 1.203011e-05	k: 44	n:4910000
Cons ci ratio: 6.626890e-04	ci left: 8.766537e-01	ci right 8.772350e-01	k: 4305798	n:4910000
KS ci ratio: 2.771858e+00	ci left: 5.156376e-09	ci right 1.134754e-06	k: 1	n:4910000
APC   4910000 perm   14328 sec   (343 perm/sec)   p_kst 2.036660e-07   p_cons 8.769446e-01   p_joint 8.961303e-06

Joint ci ratio: 5.843564e-01	ci left: 6.498070e-06	ci right 1.200566e-05	k: 44	n:4920000
Cons ci ratio: 6.619992e-04	ci left: 8.766592e-01	ci right 8.772399e-01	k: 4314593	n:4920000
KS ci ratio: 2.771858e+00	ci left: 5.145896e-09	ci right 1.132447e-06	k: 1	n:4920000
APC   4920000 perm   14378 sec   (342 perm/sec)   p_kst 2.032520e-07   p_cons 8.769498e-01   p_joint 8.943089e-06

Joint ci ratio: 5.843564e-01	ci left: 6.484889e-06	ci right 1.198131e-05	k: 44	n:4930000
Cons ci ratio: 6.612980e-04	ci left: 8.766691e-01	ci right 8.772493e-01	k: 4323410	n:4930000
KS ci ratio: 2.771858e+00	ci left: 5.135458e-09	ci right 1.130150e-06	k: 1	n:4930000
APC   4930000 perm   14431 sec   (342 perm/sec)   p_kst 2.028398e-07   p_cons 8.769594e-01   p_joint 8.924949e-06

Joint ci ratio: 5.843564e-01	ci left: 6.471762e-06	ci right 1.195706e-05	k: 44	n:4940000
Cons ci ratio: 6.606014e-04	ci left: 8.766782e-01	ci right 8.772578e-01	k: 4332223	n:4940000
KS ci ratio: 2.771858e+00	ci left: 5.125062e-09	ci right 1.127863e-06	k: 1	n:4940000
APC   4940000 perm   14479 sec   (341 perm/sec)   p_kst 2.024291e-07   p_cons 8.769682e-01   p_joint 8.906883e-06

Joint ci ratio: 5.843564e-01	ci left: 6.458687e-06	ci right 1.193290e-05	k: 44	n:4950000
Cons ci ratio: 6.599633e-04	ci left: 8.766689e-01	ci right 8.772478e-01	k: 4340945	n:4950000
KS ci ratio: 2.771858e+00	ci left: 5.114709e-09	ci right 1.125584e-06	k: 1	n:4950000
APC   4950000 perm   14531 sec   (341 perm/sec)   p_kst 2.020202e-07   p_cons 8.769586e-01   p_joint 8.888889e-06

Joint ci ratio: 5.843564e-01	ci left: 6.445666e-06	ci right 1.190884e-05	k: 44	n:4960000
Cons ci ratio: 6.593017e-04	ci left: 8.766679e-01	ci right 8.772462e-01	k: 4349708	n:4960000
KS ci ratio: 2.771858e+00	ci left: 5.104397e-09	ci right 1.123315e-06	k: 1	n:4960000
APC   4960000 perm   14581 sec   (340 perm/sec)   p_kst 2.016129e-07   p_cons 8.769573e-01   p_joint 8.870968e-06

Joint ci ratio: 5.843564e-01	ci left: 6.432697e-06	ci right 1.188488e-05	k: 44	n:4970000
Cons ci ratio: 6.586599e-04	ci left: 8.766610e-01	ci right 8.772388e-01	k: 4358442	n:4970000
KS ci ratio: 2.771858e+00	ci left: 5.094126e-09	ci right 1.121054e-06	k: 1	n:4970000
APC   4970000 perm   14633 sec   (340 perm/sec)   p_kst 2.012072e-07   p_cons 8.769501e-01   p_joint 8.853119e-06

Joint ci ratio: 5.843564e-01	ci left: 6.419780e-06	ci right 1.186102e-05	k: 44	n:4980000
Cons ci ratio: 6.579680e-04	ci left: 8.766712e-01	ci right 8.772484e-01	k: 4367261	n:4980000
KS ci ratio: 2.771858e+00	ci left: 5.083897e-09	ci right 1.118803e-06	k: 1	n:4980000
APC   4980000 perm   14682 sec   (339 perm/sec)   p_kst 2.008032e-07   p_cons 8.769600e-01   p_joint 8.835341e-06

Joint ci ratio: 5.843564e-01	ci left: 6.406914e-06	ci right 1.183725e-05	k: 44	n:4990000
Cons ci ratio: 6.573264e-04	ci left: 8.766656e-01	ci right 8.772422e-01	k: 4376001	n:4990000
KS ci ratio: 2.771858e+00	ci left: 5.073709e-09	ci right 1.116561e-06	k: 1	n:4990000
APC   4990000 perm   14731 sec   (339 perm/sec)   p_kst 2.004008e-07   p_cons 8.769541e-01   p_joint 8.817635e-06

Joint ci ratio: 3.959759e-01	ci left: 1.573212e-05	ci right 2.366630e-05	k: 97	n:5000000
Cons ci ratio: 6.838012e-04	ci left: 8.676493e-01	ci right 8.682430e-01	k: 4339732	n:5000000
KS ci ratio: 2.771858e+00	ci left: 5.063562e-09	ci right 1.114328e-06	k: 1	n:5000000
APC   5000000 perm   14780 sec   (338 perm/sec)   p_kst 2.000000e-07   p_cons 8.679464e-01   p_joint 1.940000e-05

Outputting figure to mutsig2_images.part000000000009/APC.187_8592_5000000_2e-07_0.86795_1.94e-05.png
                gene_name: APC
               theta_stop: 2.8 
                    nperm: 5000000 
                     p_ks: 2.00e-07 
        ci_ks_bounds_left: 5.06e-09 
       ci_ks_bounds_right: 1.11e-06 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1.94e-05 
     ci_joint_bounds_left: 1.57e-05 
    ci_joint_bounds_right: 2.37e-05 

Current progress: 2 percent done.
APOB
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.956496e-02	ci left: 2.325450e-01	ci right 2.494061e-01	k: 2409	n:10000
Cons ci ratio: 7.582348e-02	ci left: 2.028409e-01	ci right 2.189279e-01	k: 2108	n:10000
KS ci ratio: 8.760919e-02	ci left: 1.594429e-01	ci right 1.741517e-01	k: 1667	n:10000
APOB   10000 perm   4 sec   (2676 perm/sec)   p_kst 1.667000e-01   p_cons 2.108000e-01   p_joint 2.409000e-01

Outputting figure to mutsig2_images.part000000000009/APOB.38_13808_10000_0.1667_0.2108_0.2409.png
                gene_name: APOB
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 5 percent done.
APLP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.470260e-02	ci left: 2.077708e-01	ci right 2.239950e-01	k: 2158	n:10000
Cons ci ratio: 3.024481e-02	ci left: 6.172347e-01	ci right 6.362914e-01	k: 6268	n:10000
KS ci ratio: 1.111015e-01	ci left: 1.045169e-01	ci right 1.169109e-01	k: 1106	n:10000
APLP1   10000 perm   2 sec   (5360 perm/sec)   p_kst 1.106000e-01   p_cons 6.268000e-01   p_joint 2.158000e-01

Joint ci ratio: 5.899123e-02	ci left: 1.754880e-01	ci right 1.862050e-01	k: 3616	n:20000
Cons ci ratio: 2.136905e-02	ci left: 6.204554e-01	ci right 6.339076e-01	k: 12544	n:20000
KS ci ratio: 7.898397e-02	ci left: 1.053025e-01	ci right 1.140113e-01	k: 2192	n:20000
APLP1   20000 perm   4 sec   (4968 perm/sec)   p_kst 1.096000e-01   p_cons 6.272000e-01   p_joint 1.808000e-01

Outputting figure to mutsig2_images.part000000000009/APLP1.10_2024_20000_0.1096_0.6272_0.1808.png
                gene_name: APLP1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 7 percent done.
AP3B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.899040e-02	ci left: 6.369381e-01	ci right 6.557766e-01	k: 6464	n:10000
Cons ci ratio: 1.127142e-02	ci left: 9.183224e-01	ci right 9.288293e-01	k: 9237	n:10000
KS ci ratio: 4.473999e-02	ci left: 4.244558e-01	ci right 4.439826e-01	k: 4342	n:10000
AP3B1   10000 perm   2 sec   (4251 perm/sec)   p_kst 4.342000e-01   p_cons 9.237000e-01   p_joint 6.464000e-01

Outputting figure to mutsig2_images.part000000000009/AP3B1.9_3393_10000_0.4342_0.9237_0.6464.png
                gene_name: AP3B1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 10 percent done.
AP4E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.671637e-02	ci left: 6.735763e-01	ci right 6.919171e-01	k: 6828	n:10000
Cons ci ratio: 1.826145e-02	ci left: 8.140546e-01	ci right 8.291576e-01	k: 8217	n:10000
KS ci ratio: 3.494051e-02	ci left: 5.473990e-01	ci right 5.669676e-01	k: 5572	n:10000
AP4E1   10000 perm   2 sec   (4430 perm/sec)   p_kst 5.572000e-01   p_cons 8.217000e-01   p_joint 6.828000e-01

Outputting figure to mutsig2_images.part000000000009/AP4E1.9_3498_10000_0.5572_0.8217_0.6828.png
                gene_name: AP4E1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 12 percent done.
APPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.795407e-03	ci left: 9.365128e-01	ci right 9.458281e-01	k: 9413	n:10000
Cons ci ratio: 3.811184e-02	ci left: 5.041511e-01	ci right 5.238407e-01	k: 5140	n:10000
KS ci ratio: 1.289569e-02	ci left: 8.964156e-01	ci right 9.081488e-01	k: 9024	n:10000
APPL1   10000 perm   2 sec   (4767 perm/sec)   p_kst 9.024000e-01   p_cons 5.140000e-01   p_joint 9.413000e-01

Outputting figure to mutsig2_images.part000000000009/APPL1.9_2218_10000_0.9024_0.514_0.9413.png
                gene_name: APPL1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 15 percent done.
APAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.046152e-01	ci left: 3.176903e-02	ci right 3.910482e-02	k: 353	n:10000
Cons ci ratio: 3.310805e-02	ci left: 5.738649e-01	ci right 5.932863e-01	k: 5836	n:10000
KS ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
APAF1   10000 perm   3 sec   (3550 perm/sec)   p_kst 8.800000e-03   p_cons 5.836000e-01   p_joint 3.530000e-02

Joint ci ratio: 1.580186e-01	ci left: 2.748703e-02	ci right 3.225095e-02	k: 596	n:20000
Cons ci ratio: 2.375352e-02	ci left: 5.696665e-01	ci right 5.834113e-01	k: 11531	n:20000
KS ci ratio: 2.876468e-01	ci left: 7.877125e-03	ci right 1.056846e-02	k: 183	n:20000
APAF1   20000 perm   6 sec   (3523 perm/sec)   p_kst 9.150000e-03   p_cons 5.765500e-01   p_joint 2.980000e-02

Joint ci ratio: 1.283227e-01	ci left: 2.822778e-02	ci right 3.213057e-02	k: 904	n:30000
Cons ci ratio: 1.946331e-02	ci left: 5.692154e-01	ci right 5.804367e-01	k: 17245	n:30000
KS ci ratio: 2.439484e-01	ci left: 7.492322e-03	ci right 9.604510e-03	k: 255	n:30000
APAF1   30000 perm   8 sec   (3544 perm/sec)   p_kst 8.500000e-03   p_cons 5.748333e-01   p_joint 3.013333e-02

Joint ci ratio: 1.136146e-01	ci left: 2.725574e-02	ci right 3.056312e-02	k: 1155	n:40000
Cons ci ratio: 1.688206e-02	ci left: 5.692114e-01	ci right 5.789278e-01	k: 22963	n:40000
KS ci ratio: 2.179107e-01	ci left: 7.150356e-03	ci right 8.922184e-03	k: 320	n:40000
APAF1   40000 perm   11 sec   (3493 perm/sec)   p_kst 8.000000e-03   p_cons 5.740750e-01   p_joint 2.887500e-02

Joint ci ratio: 1.105722e-01	ci left: 2.316260e-02	ci right 2.589299e-02	k: 1225	n:50000
Cons ci ratio: 1.506454e-02	ci left: 5.708730e-01	ci right 5.795583e-01	k: 28761	n:50000
KS ci ratio: 1.935128e-01	ci left: 7.352032e-03	ci right 8.945866e-03	k: 406	n:50000
APAF1   50000 perm   14 sec   (3451 perm/sec)   p_kst 8.120000e-03   p_cons 5.752200e-01   p_joint 2.450000e-02

Joint ci ratio: 1.155608e-01	ci left: 1.772824e-02	ci right 1.991866e-02	k: 1128	n:60000
Cons ci ratio: 1.375822e-02	ci left: 5.710326e-01	ci right 5.789601e-01	k: 34500	n:60000
KS ci ratio: 1.737006e-01	ci left: 7.685258e-03	ci right 9.162882e-03	k: 504	n:60000
APAF1   60000 perm   18 sec   (3373 perm/sec)   p_kst 8.400000e-03   p_cons 5.750000e-01   p_joint 1.880000e-02

Joint ci ratio: 1.044768e-01	ci left: 1.868334e-02	ci right 2.075674e-02	k: 1379	n:70000
Cons ci ratio: 1.249652e-02	ci left: 5.806528e-01	ci right 5.879688e-01	k: 40902	n:70000
KS ci ratio: 1.576314e-01	ci left: 8.066503e-03	ci right 9.460389e-03	k: 612	n:70000
APAF1   70000 perm   21 sec   (3326 perm/sec)   p_kst 8.742857e-03   p_cons 5.843143e-01   p_joint 1.970000e-02

Joint ci ratio: 1.029873e-01	ci left: 1.687065e-02	ci right 1.871455e-02	k: 1422	n:80000
Cons ci ratio: 1.169160e-02	ci left: 5.808005e-01	ci right 5.876434e-01	k: 46738	n:80000
KS ci ratio: 1.475115e-01	ci left: 8.104217e-03	ci right 9.406784e-03	k: 699	n:80000
APAF1   80000 perm   24 sec   (3309 perm/sec)   p_kst 8.737500e-03   p_cons 5.842250e-01   p_joint 1.777500e-02

Joint ci ratio: 9.281697e-02	ci left: 1.853057e-02	ci right 2.034503e-02	k: 1748	n:90000
Cons ci ratio: 1.104901e-02	ci left: 5.798484e-01	ci right 5.863018e-01	k: 52477	n:90000
KS ci ratio: 1.385879e-01	ci left: 8.200150e-03	ci right 9.431822e-03	k: 792	n:90000
APAF1   90000 perm   30 sec   (3039 perm/sec)   p_kst 8.800000e-03   p_cons 5.830778e-01   p_joint 1.942222e-02

Joint ci ratio: 8.496928e-02	ci left: 1.995376e-02	ci right 2.173419e-02	k: 2083	n:100000
Cons ci ratio: 1.049125e-02	ci left: 5.795863e-01	ci right 5.857089e-01	k: 58265	n:100000
KS ci ratio: 1.314845e-01	ci left: 8.230427e-03	ci right 9.398331e-03	k: 880	n:100000
APAF1   100000 perm   34 sec   (2925 perm/sec)   p_kst 8.800000e-03   p_cons 5.826500e-01   p_joint 2.083000e-02

Joint ci ratio: 8.290756e-02	ci left: 1.909173e-02	ci right 2.075190e-02	k: 2190	n:110000
Cons ci ratio: 1.000985e-02	ci left: 5.793971e-01	ci right 5.852350e-01	k: 64055	n:110000
KS ci ratio: 1.246602e-01	ci left: 8.353417e-03	ci right 9.472706e-03	k: 979	n:110000
APAF1   110000 perm   38 sec   (2928 perm/sec)   p_kst 8.900000e-03   p_cons 5.823182e-01   p_joint 1.990909e-02

Joint ci ratio: 8.474822e-02	ci left: 1.677377e-02	ci right 1.826634e-02	k: 2101	n:120000
Cons ci ratio: 9.578491e-03	ci left: 5.797871e-01	ci right 5.853756e-01	k: 69910	n:120000
KS ci ratio: 1.188544e-01	ci left: 8.449124e-03	ci right 9.524806e-03	k: 1077	n:120000
APAF1   120000 perm   41 sec   (2905 perm/sec)   p_kst 8.975000e-03   p_cons 5.825833e-01   p_joint 1.750833e-02

Joint ci ratio: 7.229518e-02	ci left: 2.131525e-02	ci right 2.292155e-02	k: 2874	n:130000
Cons ci ratio: 9.210998e-03	ci left: 5.794595e-01	ci right 5.848292e-01	k: 75679	n:130000
KS ci ratio: 1.144309e-01	ci left: 8.433960e-03	ci right 9.465046e-03	k: 1162	n:130000
APAF1   130000 perm   45 sec   (2894 perm/sec)   p_kst 8.938462e-03   p_cons 5.821462e-01   p_joint 2.210769e-02

Joint ci ratio: 7.095514e-02	ci left: 2.057812e-02	ci right 2.209894e-02	k: 2986	n:140000
Cons ci ratio: 8.870013e-03	ci left: 5.798829e-01	ci right 5.850565e-01	k: 81546	n:140000
KS ci ratio: 1.107810e-01	ci left: 8.372971e-03	ci right 9.361817e-03	k: 1240	n:140000
APAF1   140000 perm   48 sec   (2888 perm/sec)   p_kst 8.857143e-03   p_cons 5.824714e-01   p_joint 2.132857e-02

Joint ci ratio: 7.063363e-02	ci left: 1.940884e-02	ci right 2.083646e-02	k: 3017	n:150000
Cons ci ratio: 8.564403e-03	ci left: 5.802463e-01	ci right 5.852438e-01	k: 87412	n:150000
KS ci ratio: 1.068481e-01	ci left: 8.417911e-03	ci right 9.374551e-03	k: 1333	n:150000
APAF1   150000 perm   52 sec   (2868 perm/sec)   p_kst 8.886667e-03   p_cons 5.827467e-01   p_joint 2.011333e-02

Joint ci ratio: 6.734357e-02	ci left: 2.003866e-02	ci right 2.144128e-02	k: 3317	n:160000
Cons ci ratio: 8.285469e-03	ci left: 5.807358e-01	ci right 5.855737e-01	k: 93305	n:160000
KS ci ratio: 1.033064e-01	ci left: 8.457776e-03	ci right 9.385151e-03	k: 1426	n:160000
APAF1   160000 perm   56 sec   (2851 perm/sec)   p_kst 8.912500e-03   p_cons 5.831563e-01   p_joint 2.073125e-02

Joint ci ratio: 6.294369e-02	ci left: 2.160331e-02	ci right 2.301305e-02	k: 3791	n:170000
Cons ci ratio: 8.186602e-03	ci left: 5.718748e-01	ci right 5.765815e-01	k: 97619	n:170000
KS ci ratio: 9.986332e-02	ci left: 8.533567e-03	ci right 9.436238e-03	k: 1526	n:170000
APAF1   170000 perm   60 sec   (2830 perm/sec)   p_kst 8.976471e-03   p_cons 5.742294e-01   p_joint 2.230000e-02

Outputting figure to mutsig2_images.part000000000009/APAF1.8_3851_170000_0.0089765_0.57423_0.0223.png
                gene_name: APAF1
               theta_stop: 0.100 
                    nperm: 170000 
                     p_ks: 0.0090 
        ci_ks_bounds_left: 0.0085 
       ci_ks_bounds_right: 0.0094 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 17 percent done.
APBA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.321256e-02	ci left: 2.145771e-01	ci right 2.309847e-01	k: 2227	n:10000
Cons ci ratio: 6.054087e-02	ci left: 2.863697e-01	ci right 3.043496e-01	k: 2953	n:10000
KS ci ratio: 8.249378e-02	ci left: 1.765467e-01	ci right 1.918378e-01	k: 1841	n:10000
APBA1   10000 perm   3 sec   (3967 perm/sec)   p_kst 1.841000e-01   p_cons 2.953000e-01   p_joint 2.227000e-01

Outputting figure to mutsig2_images.part000000000009/APBA1.7_2562_10000_0.1841_0.2953_0.2227.png
                gene_name: APBA1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 20 percent done.
APBA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.344096e-02	ci left: 2.674529e-01	ci right 2.850777e-01	k: 2762	n:10000
Cons ci ratio: 3.300599e-02	ci left: 5.753695e-01	ci right 5.947809e-01	k: 5851	n:10000
KS ci ratio: 9.986532e-02	ci left: 1.267935e-01	ci right 1.402208e-01	k: 1334	n:10000
APBA2   10000 perm   2 sec   (5422 perm/sec)   p_kst 1.334000e-01   p_cons 5.851000e-01   p_joint 2.762000e-01

Outputting figure to mutsig2_images.part000000000009/APBA2.6_2298_10000_0.1334_0.5851_0.2762.png
                gene_name: APBA2
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 22 percent done.
APBB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.015712e-02	ci left: 3.695773e-01	ci right 3.886931e-01	k: 3791	n:10000
Cons ci ratio: 4.779148e-02	ci left: 3.924695e-01	ci right 4.117875e-01	k: 4021	n:10000
KS ci ratio: 5.144913e-02	ci left: 3.577420e-01	ci right 3.767354e-01	k: 3672	n:10000
APBB1   10000 perm   2 sec   (5456 perm/sec)   p_kst 3.672000e-01   p_cons 4.021000e-01   p_joint 3.791000e-01

Outputting figure to mutsig2_images.part000000000009/APBB1.6_2185_10000_0.3672_0.4021_0.3791.png
                gene_name: APBB1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 24 percent done.
APLP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.357377e-02	ci left: 3.392554e-01	ci right 3.580328e-01	k: 3486	n:10000
Cons ci ratio: 9.896889e-02	ci left: 1.288487e-01	ci right 1.423643e-01	k: 1355	n:10000
KS ci ratio: 1.098941e-02	ci left: 9.219324e-01	ci right 9.322172e-01	k: 9272	n:10000
APLP2   10000 perm   2 sec   (5417 perm/sec)   p_kst 9.272000e-01   p_cons 1.355000e-01   p_joint 3.486000e-01

Outputting figure to mutsig2_images.part000000000009/APLP2.6_2364_10000_0.9272_0.1355_0.3486.png
                gene_name: APLP2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 27 percent done.
APBB1IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.275454e-01	ci left: 8.077027e-02	ci right 9.187210e-02	k: 862	n:10000
Cons ci ratio: 2.248291e-01	ci left: 2.617677e-02	ci right 3.290101e-02	k: 294	n:10000
KS ci ratio: 6.563685e-02	ci left: 2.541932e-01	ci right 2.715451e-01	k: 2628	n:10000
APBB1IP   10000 perm   3 sec   (3595 perm/sec)   p_kst 2.628000e-01   p_cons 2.940000e-02   p_joint 8.620000e-02

Joint ci ratio: 1.007989e-01	ci left: 6.674574e-02	ci right 7.387980e-02	k: 1405	n:20000
Cons ci ratio: 1.688184e-01	ci left: 2.403039e-02	ci right 2.850878e-02	k: 524	n:20000
KS ci ratio: 4.530706e-02	ci left: 2.661392e-01	ci right 2.785271e-01	k: 5446	n:20000
APBB1IP   20000 perm   5 sec   (3946 perm/sec)   p_kst 2.723000e-01   p_cons 2.620000e-02   p_joint 7.025000e-02

Joint ci ratio: 8.915845e-02	ci left: 5.782817e-02	ci right 6.325732e-02	k: 1815	n:30000
Cons ci ratio: 1.382469e-01	ci left: 2.429301e-02	ci right 2.793288e-02	k: 782	n:30000
KS ci ratio: 3.683358e-02	ci left: 2.689916e-01	ci right 2.791189e-01	k: 8221	n:30000
APBB1IP   30000 perm   7 sec   (4024 perm/sec)   p_kst 2.740333e-01   p_cons 2.606667e-02   p_joint 6.050000e-02

Joint ci ratio: 7.992510e-02	ci left: 5.445335e-02	ci right 5.901126e-02	k: 2268	n:40000
Cons ci ratio: 1.198438e-01	ci left: 2.448676e-02	ci right 2.763256e-02	k: 1041	n:40000
KS ci ratio: 3.178832e-02	ci left: 2.710511e-01	ci right 2.798316e-01	k: 11017	n:40000
APBB1IP   40000 perm   10 sec   (4054 perm/sec)   p_kst 2.754250e-01   p_cons 2.602500e-02   p_joint 5.670000e-02

Joint ci ratio: 6.197744e-02	ci left: 7.177944e-02	ci right 7.639016e-02	k: 3703	n:50000
Cons ci ratio: 1.060478e-01	ci left: 2.518763e-02	ci right 2.802769e-02	k: 1329	n:50000
KS ci ratio: 2.836484e-02	ci left: 2.724632e-01	ci right 2.803228e-01	k: 13819	n:50000
APBB1IP   50000 perm   13 sec   (3963 perm/sec)   p_kst 2.763800e-01   p_cons 2.658000e-02   p_joint 7.406000e-02

Joint ci ratio: 5.528371e-02	ci left: 7.517521e-02	ci right 7.946578e-02	k: 4638	n:60000
Cons ci ratio: 9.687051e-02	ci left: 2.527825e-02	ci right 2.786782e-02	k: 1593	n:60000
KS ci ratio: 2.589345e-02	ci left: 2.728075e-01	ci right 2.799808e-01	k: 16583	n:60000
APBB1IP   60000 perm   16 sec   (3841 perm/sec)   p_kst 2.763833e-01   p_cons 2.655000e-02   p_joint 7.730000e-02

Outputting figure to mutsig2_images.part000000000009/APBB1IP.5_2053_60000_0.27638_0.02655_0.0773.png
                gene_name: APBB1IP
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.079 

Current progress: 29 percent done.
APCDD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.067321e-02	ci left: 7.741813e-01	ci right 7.904539e-01	k: 7824	n:10000
KS ci ratio: 1.793042e-02	ci left: 8.194416e-01	ci right 8.343675e-01	k: 8270	n:10000
APCDD1   10000 perm   2 sec   (5485 perm/sec)   p_kst 8.270000e-01   p_cons 7.824000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/APCDD1.5_1565_10000_0.827_0.7824_1.png
                gene_name: APCDD1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
APCDD1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.571689e-02	ci left: 3.217772e-01	ci right 3.403213e-01	k: 3310	n:10000
Cons ci ratio: 7.575520e-02	ci left: 2.031366e-01	ci right 2.192320e-01	k: 2111	n:10000
KS ci ratio: 3.996185e-02	ci left: 4.804561e-01	ci right 5.001496e-01	k: 4903	n:10000
APCDD1L   10000 perm   2 sec   (5805 perm/sec)   p_kst 4.903000e-01   p_cons 2.111000e-01   p_joint 3.310000e-01

Outputting figure to mutsig2_images.part000000000009/APCDD1L.5_1522_10000_0.4903_0.2111_0.331.png
                gene_name: APCDD1L
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 34 percent done.
APLF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.831127e-02	ci left: 8.132417e-01	ci right 8.283709e-01	k: 8209	n:10000
KS ci ratio: 2.225164e-02	ci left: 7.477617e-01	ci right 7.646888e-01	k: 7563	n:10000
APLF   10000 perm   2 sec   (5268 perm/sec)   p_kst 7.563000e-01   p_cons 8.209000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/APLF.5_1576_10000_0.7563_0.8209_1.png
                gene_name: APLF
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
AP2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.144239e-02	ci left: 7.613202e-01	ci right 7.779225e-01	k: 7697	n:10000
KS ci ratio: 2.041810e-02	ci left: 7.784370e-01	ci right 7.945958e-01	k: 7866	n:10000
AP2B1   10000 perm   2 sec   (4669 perm/sec)   p_kst 7.866000e-01   p_cons 7.697000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/AP2B1.4_2940_10000_0.7866_0.7697_1.png
                gene_name: AP2B1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
AP2M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.514666e-02	ci left: 2.057986e-01	ci right 2.219684e-01	k: 2138	n:10000
Cons ci ratio: 5.574205e-02	ci left: 3.215787e-01	ci right 3.401199e-01	k: 3308	n:10000
KS ci ratio: 9.323853e-02	ci left: 1.431522e-01	ci right 1.572522e-01	k: 1501	n:10000
AP2M1   10000 perm   2 sec   (6252 perm/sec)   p_kst 1.501000e-01   p_cons 3.308000e-01   p_joint 2.138000e-01

Outputting figure to mutsig2_images.part000000000009/AP2M1.4_1349_10000_0.1501_0.3308_0.2138.png
                gene_name: AP2M1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 41 percent done.
APEX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.283413e-02	ci left: 2.163531e-01	ci right 2.328076e-01	k: 2245	n:10000
Cons ci ratio: 9.427484e-02	ci left: 1.404072e-01	ci right 1.543988e-01	k: 1473	n:10000
KS ci ratio: 5.821045e-02	ci left: 3.028259e-01	ci right 3.210837e-01	k: 3119	n:10000
APEX1   10000 perm   2 sec   (5950 perm/sec)   p_kst 3.119000e-01   p_cons 1.473000e-01   p_joint 2.245000e-01

Outputting figure to mutsig2_images.part000000000009/APEX1.4_973_10000_0.3119_0.1473_0.2245.png
                gene_name: APEX1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 44 percent done.
APLNR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.029907e-02	ci left: 4.762592e-01	ci right 4.959489e-01	k: 4861	n:10000
Cons ci ratio: 9.251487e-02	ci left: 1.451135e-01	ci right 1.592898e-01	k: 1521	n:10000
KS ci ratio: 2.063072e-02	ci left: 7.748905e-01	ci right 7.911443e-01	k: 7831	n:10000
APLNR   10000 perm   2 sec   (6067 perm/sec)   p_kst 7.831000e-01   p_cons 1.521000e-01   p_joint 4.861000e-01

Outputting figure to mutsig2_images.part000000000009/APLNR.4_1147_10000_0.7831_0.1521_0.4861.png
                gene_name: APLNR
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 46 percent done.
APOBEC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
Cons ci ratio: 1.879096e-01	ci left: 3.777051e-02	ci right 4.569926e-02	k: 416	n:10000
KS ci ratio: 4.736681e-02	ci left: 3.967519e-01	ci right 4.161027e-01	k: 4064	n:10000
APOBEC4   10000 perm   2 sec   (6398 perm/sec)   p_kst 4.064000e-01   p_cons 4.160000e-02   p_joint 1.422000e-01

Joint ci ratio: 6.955317e-02	ci left: 1.322626e-01	ci right 1.418432e-01	k: 2740	n:20000
Cons ci ratio: 1.314023e-01	ci left: 3.979437e-02	ci right 4.543958e-02	k: 851	n:20000
KS ci ratio: 3.336502e-02	ci left: 4.014768e-01	ci right 4.151499e-01	k: 8166	n:20000
APOBEC4   20000 perm   4 sec   (5592 perm/sec)   p_kst 4.083000e-01   p_cons 4.255000e-02   p_joint 1.370000e-01

Joint ci ratio: 4.992503e-02	ci left: 1.661938e-01	ci right 1.747368e-01	k: 5113	n:30000
Cons ci ratio: 1.019099e-01	ci left: 4.459990e-02	ci right 4.942165e-02	k: 1409	n:30000
KS ci ratio: 2.759019e-02	ci left: 3.966444e-01	ci right 4.077746e-01	k: 12066	n:30000
APOBEC4   30000 perm   6 sec   (5336 perm/sec)   p_kst 4.022000e-01   p_cons 4.696667e-02   p_joint 1.704333e-01

Joint ci ratio: 5.035374e-02	ci left: 1.282520e-01	ci right 1.349016e-01	k: 5262	n:40000
Cons ci ratio: 8.867843e-02	ci left: 4.450592e-02	ci right 4.866022e-02	k: 1862	n:40000
KS ci ratio: 2.401636e-02	ci left: 3.949445e-01	ci right 4.045700e-01	k: 15990	n:40000
APOBEC4   40000 perm   8 sec   (5140 perm/sec)   p_kst 3.997500e-01   p_cons 4.655000e-02   p_joint 1.315500e-01

Outputting figure to mutsig2_images.part000000000009/APOBEC4.4_1108_40000_0.39975_0.04655_0.13155.png
                gene_name: APOBEC4
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 49 percent done.
APPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.529048e-02	ci left: 4.184738e-01	ci right 4.379680e-01	k: 4282	n:10000
Cons ci ratio: 7.931618e-02	ci left: 1.884559e-01	ci right 2.041214e-01	k: 1962	n:10000
KS ci ratio: 4.632269e-02	ci left: 4.075108e-01	ci right 4.269375e-01	k: 4172	n:10000
APPL2   10000 perm   2 sec   (5611 perm/sec)   p_kst 4.172000e-01   p_cons 1.962000e-01   p_joint 4.282000e-01

Outputting figure to mutsig2_images.part000000000009/APPL2.4_2079_10000_0.4172_0.1962_0.4282.png
                gene_name: APPL2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 51 percent done.
AQP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.869635e-02	ci left: 1.561040e-01	ci right 1.706926e-01	k: 1633	n:10000
Cons ci ratio: 4.584535e-03	ci left: 9.841492e-01	ci right 9.887610e-01	k: 9866	n:10000
KS ci ratio: 1.432065e-01	ci left: 6.468834e-02	ci right 7.476406e-02	k: 696	n:10000
AQP10   10000 perm   2 sec   (6165 perm/sec)   p_kst 6.960000e-02   p_cons 9.866000e-01   p_joint 1.633000e-01

Joint ci ratio: 5.738014e-02	ci left: 1.837429e-01	ci right 1.946476e-01	k: 3783	n:20000
Cons ci ratio: 3.361802e-03	ci left: 9.837987e-01	ci right 9.871580e-01	k: 19711	n:20000
KS ci ratio: 1.015781e-01	ci left: 6.576929e-02	ci right 7.285655e-02	k: 1385	n:20000
AQP10   20000 perm   4 sec   (5280 perm/sec)   p_kst 6.925000e-02   p_cons 9.855500e-01   p_joint 1.891500e-01

Joint ci ratio: 5.559339e-02	ci left: 1.382001e-01	ci right 1.461360e-01	k: 4264	n:30000
Cons ci ratio: 2.583653e-03	ci left: 9.858281e-01	ci right 9.884096e-01	k: 29615	n:30000
KS ci ratio: 8.232350e-02	ci left: 6.736673e-02	ci right 7.318349e-02	k: 2107	n:30000
AQP10   30000 perm   6 sec   (5100 perm/sec)   p_kst 7.023333e-02   p_cons 9.871667e-01   p_joint 1.421333e-01

Outputting figure to mutsig2_images.part000000000009/AQP10.4_930_30000_0.070233_0.98717_0.14213.png
                gene_name: AQP10
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 54 percent done.
AP2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.371106e-02	ci left: 5.650398e-01	ci right 5.845166e-01	k: 5748	n:10000
KS ci ratio: 1.057738e-02	ci left: 9.270955e-01	ci right 9.370510e-01	k: 9322	n:10000
AP2A1   10000 perm   2 sec   (5100 perm/sec)   p_kst 9.322000e-01   p_cons 5.748000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/AP2A1.3_3030_10000_0.9322_0.5748_1.png
                gene_name: AP2A1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
AP4M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.069448e-02	ci left: 1.502147e-01	ci right 1.645855e-01	k: 1573	n:10000
Cons ci ratio: 4.547591e-02	ci left: 4.164802e-01	ci right 4.359628e-01	k: 4262	n:10000
KS ci ratio: 1.969557e-01	ci left: 3.433772e-02	ci right 4.193438e-02	k: 380	n:10000
AP4M1   10000 perm   2 sec   (5618 perm/sec)   p_kst 3.800000e-02   p_cons 4.262000e-01   p_joint 1.573000e-01

Joint ci ratio: 8.694855e-02	ci left: 8.822495e-02	ci right 9.629404e-02	k: 1844	n:20000
Cons ci ratio: 3.170644e-02	ci left: 4.262678e-01	ci right 4.400516e-01	k: 8663	n:20000
KS ci ratio: 1.371344e-01	ci left: 3.655254e-02	ci right 4.198245e-02	k: 784	n:20000
AP4M1   20000 perm   4 sec   (5139 perm/sec)   p_kst 3.920000e-02   p_cons 4.331500e-01   p_joint 9.220000e-02

Joint ci ratio: 7.754116e-02	ci left: 7.544804e-02	ci right 8.156722e-02	k: 2354	n:30000
Cons ci ratio: 2.578643e-02	ci left: 4.294798e-01	ci right 4.407328e-01	k: 13053	n:30000
KS ci ratio: 1.116503e-01	ci left: 3.725903e-02	ci right 4.169739e-02	k: 1183	n:30000
AP4M1   30000 perm   6 sec   (4903 perm/sec)   p_kst 3.943333e-02   p_cons 4.351000e-01   p_joint 7.846667e-02

Joint ci ratio: 6.373424e-02	ci left: 8.363966e-02	ci right 8.917056e-02	k: 3455	n:40000
Cons ci ratio: 2.233430e-02	ci left: 4.301840e-01	ci right 4.399255e-01	k: 17402	n:40000
KS ci ratio: 9.693766e-02	ci left: 3.736799e-02	ci right 4.119926e-02	k: 1570	n:40000
AP4M1   40000 perm   9 sec   (4693 perm/sec)   p_kst 3.925000e-02   p_cons 4.350500e-01   p_joint 8.637500e-02

Outputting figure to mutsig2_images.part000000000009/AP4M1.3_1422_40000_0.03925_0.43505_0.086375.png
                gene_name: AP4M1
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.089 

Current progress: 59 percent done.
APBB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.765417e-02	ci left: 8.239157e-01	ci right 8.386908e-01	k: 8314	n:10000
Cons ci ratio: 2.685211e-02	ci left: 6.713602e-01	ci right 6.897345e-01	k: 6806	n:10000
KS ci ratio: 3.401542e-02	ci left: 5.606285e-01	ci right 5.801305e-01	k: 5704	n:10000
APBB2   10000 perm   2 sec   (5128 perm/sec)   p_kst 5.704000e-01   p_cons 6.806000e-01   p_joint 8.314000e-01

Outputting figure to mutsig2_images.part000000000009/APBB2.3_2336_10000_0.5704_0.6806_0.8314.png
                gene_name: APBB2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 61 percent done.
APBB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.295265e-01	ci left: 7.844097e-02	ci right 8.940285e-02	k: 838	n:10000
Cons ci ratio: 1.706816e-01	ci left: 4.580994e-02	ci right 5.445453e-02	k: 500	n:10000
KS ci ratio: 7.116072e-02	ci left: 2.244469e-01	ci right 2.411090e-01	k: 2327	n:10000
APBB3   10000 perm   2 sec   (5949 perm/sec)   p_kst 2.327000e-01   p_cons 5.000000e-02   p_joint 8.380000e-02

Joint ci ratio: 9.706290e-02	ci left: 7.172876e-02	ci right 7.909525e-02	k: 1507	n:20000
Cons ci ratio: 1.213315e-01	ci left: 4.658307e-02	ci right 5.264873e-02	k: 991	n:20000
KS ci ratio: 4.996909e-02	ci left: 2.293854e-01	ci right 2.411916e-01	k: 4705	n:20000
APBB3   20000 perm   4 sec   (5226 perm/sec)   p_kst 2.352500e-01   p_cons 4.955000e-02   p_joint 7.535000e-02

Joint ci ratio: 6.720076e-02	ci left: 9.843309e-02	ci right 1.053109e-01	k: 3055	n:30000
Cons ci ratio: 9.889283e-02	ci left: 4.730037e-02	ci right 5.225395e-02	k: 1492	n:30000
KS ci ratio: 4.125461e-02	ci left: 2.265380e-01	ci right 2.361140e-01	k: 6939	n:30000
APBB3   30000 perm   6 sec   (4873 perm/sec)   p_kst 2.313000e-01   p_cons 4.973333e-02   p_joint 1.018333e-01

Outputting figure to mutsig2_images.part000000000009/APBB3.3_1530_30000_0.2313_0.049733_0.10183.png
                gene_name: APBB3
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.11 

Current progress: 63 percent done.
APH1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.133354e-02	ci left: 7.631424e-01	ci right 7.796992e-01	k: 7715	n:10000
KS ci ratio: 1.077657e-02	ci left: 9.246163e-01	ci right 9.347317e-01	k: 9298	n:10000
APH1B   10000 perm   1 sec   (7013 perm/sec)   p_kst 9.298000e-01   p_cons 7.715000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/APH1B.3_798_10000_0.9298_0.7715_1.png
                gene_name: APH1B
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
APOBEC3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.563252e-02	ci left: 5.376819e-01	ci right 5.572905e-01	k: 5475	n:10000
Cons ci ratio: 8.941686e-02	ci left: 1.539442e-01	ci right 1.684538e-01	k: 1611	n:10000
KS ci ratio: 8.799894e-03	ci left: 9.477308e-01	ci right 9.562034e-01	k: 9521	n:10000
APOBEC3C   10000 perm   2 sec   (4993 perm/sec)   p_kst 9.521000e-01   p_cons 1.611000e-01   p_joint 5.475000e-01

Outputting figure to mutsig2_images.part000000000009/APOBEC3C.3_589_10000_0.9521_0.1611_0.5475.png
                gene_name: APOBEC3C
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 68 percent done.
APOBEC3G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.746542e-02	ci left: 6.613903e-01	ci right 6.799102e-01	k: 6707	n:10000
Cons ci ratio: 2.945480e-02	ci left: 6.295976e-01	ci right 6.485213e-01	k: 6391	n:10000
KS ci ratio: 3.939054e-02	ci left: 4.876522e-01	ci right 5.073492e-01	k: 4975	n:10000
APOBEC3G   10000 perm   2 sec   (5690 perm/sec)   p_kst 4.975000e-01   p_cons 6.391000e-01   p_joint 6.707000e-01

Outputting figure to mutsig2_images.part000000000009/APOBEC3G.3_1187_10000_0.4975_0.6391_0.6707.png
                gene_name: APOBEC3G
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 71 percent done.
APOH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.280774e-02	ci left: 8.976473e-01	ci right 9.093165e-01	k: 9036	n:10000
KS ci ratio: 2.361561e-02	ci left: 7.249193e-01	ci right 7.423444e-01	k: 7337	n:10000
APOH   10000 perm   2 sec   (4698 perm/sec)   p_kst 7.337000e-01   p_cons 9.036000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/APOH.3_1070_10000_0.7337_0.9036_1.png
                gene_name: APOH
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
APOL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.483020e-01	ci left: 6.043844e-02	ci right 7.021664e-02	k: 652	n:10000
Cons ci ratio: 2.232741e-01	ci left: 2.655489e-02	ci right 3.332262e-02	k: 298	n:10000
KS ci ratio: 4.323372e-02	ci left: 4.413126e-01	ci right 4.609159e-01	k: 4511	n:10000
APOL5   10000 perm   2 sec   (4361 perm/sec)   p_kst 4.511000e-01   p_cons 2.980000e-02   p_joint 6.520000e-02

Joint ci ratio: 9.830217e-02	ci left: 7.001832e-02	ci right 7.730621e-02	k: 1472	n:20000
Cons ci ratio: 1.464120e-01	ci left: 3.206168e-02	ci right 3.717478e-02	k: 691	n:20000
KS ci ratio: 3.069101e-02	ci left: 4.422891e-01	ci right 4.561256e-01	k: 8984	n:20000
APOL5   20000 perm   5 sec   (3935 perm/sec)   p_kst 4.492000e-01   p_cons 3.455000e-02   p_joint 7.360000e-02

Joint ci ratio: 7.147121e-02	ci left: 8.786689e-02	ci right 9.441254e-02	k: 2733	n:30000
Cons ci ratio: 1.170570e-01	ci left: 3.392034e-02	ci right 3.817013e-02	k: 1080	n:30000
KS ci ratio: 2.504125e-02	ci left: 4.439260e-01	ci right 4.552171e-01	k: 13487	n:30000
APOL5   30000 perm   7 sec   (4161 perm/sec)   p_kst 4.495667e-01   p_cons 3.600000e-02   p_joint 9.110000e-02

Joint ci ratio: 4.606681e-02	ci left: 1.497326e-01	ci right 1.568178e-01	k: 6130	n:40000
Cons ci ratio: 1.017169e-01	ci left: 3.397616e-02	ci right 3.764163e-02	k: 1431	n:40000
KS ci ratio: 2.176095e-02	ci left: 4.429932e-01	ci right 4.527643e-01	k: 17915	n:40000
APOL5   40000 perm   10 sec   (4181 perm/sec)   p_kst 4.478750e-01   p_cons 3.577500e-02   p_joint 1.532500e-01

Joint ci ratio: 6.764219e-02	ci left: 6.080706e-02	ci right 6.508386e-02	k: 3146	n:50000
Cons ci ratio: 9.860414e-02	ci left: 2.912718e-02	ci right 3.216764e-02	k: 1531	n:50000
KS ci ratio: 1.948561e-02	ci left: 4.429549e-01	ci right 4.516912e-01	k: 22366	n:50000
APOL5   50000 perm   12 sec   (4166 perm/sec)   p_kst 4.473200e-01   p_cons 3.062000e-02   p_joint 6.292000e-02

Outputting figure to mutsig2_images.part000000000009/APOL5.3_1318_50000_0.44732_0.03062_0.06292.png
                gene_name: APOL5
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.065 

Current progress: 76 percent done.
AP2A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.020829e-01	ci left: 1.219021e-01	ci right 1.351151e-01	k: 1284	n:10000
Cons ci ratio: 1.251787e-01	ci left: 8.368370e-02	ci right 9.495688e-02	k: 892	n:10000
KS ci ratio: 3.403624e-02	ci left: 5.603277e-01	ci right 5.798314e-01	k: 5701	n:10000
AP2A2   10000 perm   2 sec   (5308 perm/sec)   p_kst 5.701000e-01   p_cons 8.920000e-02   p_joint 1.284000e-01

Joint ci ratio: 6.179443e-02	ci left: 1.622990e-01	ci right 1.726979e-01	k: 3349	n:20000
Cons ci ratio: 8.024300e-02	ci left: 1.023063e-01	ci right 1.109084e-01	k: 2131	n:20000
KS ci ratio: 2.410310e-02	ci left: 5.625029e-01	ci right 5.762769e-01	k: 11388	n:20000
AP2A2   20000 perm   4 sec   (4917 perm/sec)   p_kst 5.694000e-01   p_cons 1.065500e-01   p_joint 1.674500e-01

Outputting figure to mutsig2_images.part000000000009/AP2A2.2_2908_20000_0.5694_0.10655_0.16745.png
                gene_name: AP2A2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 78 percent done.
AP3B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.812695e-02	ci left: 6.507205e-01	ci right 6.693861e-01	k: 6601	n:10000
Cons ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
KS ci ratio: 2.667938e-02	ci left: 6.741808e-01	ci right 6.925123e-01	k: 6834	n:10000
AP3B2   10000 perm   2 sec   (5443 perm/sec)   p_kst 6.834000e-01   p_cons 1.890000e-01   p_joint 6.601000e-01

Outputting figure to mutsig2_images.part000000000009/AP3B2.2_3352_10000_0.6834_0.189_0.6601.png
                gene_name: AP3B2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 80 percent done.
AP3S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.513363e-02	ci left: 4.201686e-01	ci right 4.396723e-01	k: 4299	n:10000
KS ci ratio: 5.804816e-02	ci left: 3.040161e-01	ci right 3.222929e-01	k: 3131	n:10000
AP3S1   10000 perm   1 sec   (7022 perm/sec)   p_kst 3.131000e-01   p_cons 4.299000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/AP3S1.2_606_10000_0.3131_0.4299_1.png
                gene_name: AP3S1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
AP3S2
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 85 percent done.
AP4B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.713222e-02	ci left: 5.171578e-01	ci right 5.368265e-01	k: 5270	n:10000
Cons ci ratio: 5.561642e-02	ci left: 3.225714e-01	ci right 3.411266e-01	k: 3318	n:10000
KS ci ratio: 5.053201e-02	ci left: 3.660957e-01	ci right 3.851768e-01	k: 3756	n:10000
AP4B1   10000 perm   2 sec   (5921 perm/sec)   p_kst 3.756000e-01   p_cons 3.318000e-01   p_joint 5.270000e-01

Outputting figure to mutsig2_images.part000000000009/AP4B1.2_2260_10000_0.3756_0.3318_0.527.png
                gene_name: AP4B1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 88 percent done.
APOA1BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.946939e-02	ci left: 4.866526e-01	ci right 5.063494e-01	k: 4965	n:10000
KS ci ratio: 2.445056e-02	ci left: 7.109857e-01	ci right 7.286861e-01	k: 7199	n:10000
APOA1BP   10000 perm   1 sec   (6812 perm/sec)   p_kst 7.199000e-01   p_cons 4.965000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/APOA1BP.2_891_10000_0.7199_0.4965_1.png
                gene_name: APOA1BP
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
APOB48R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.663749e-03	ci left: 9.685759e-01	ci right 9.751453e-01	k: 9720	n:10000
Cons ci ratio: 1.058573e-02	ci left: 9.269922e-01	ci right 9.369544e-01	k: 9321	n:10000
KS ci ratio: 2.423853e-02	ci left: 7.145185e-01	ci right 7.321512e-01	k: 7234	n:10000
APOB48R   10000 perm   2 sec   (5792 perm/sec)   p_kst 7.234000e-01   p_cons 9.321000e-01   p_joint 9.720000e-01

Outputting figure to mutsig2_images.part000000000009/APOB48R.2_3287_10000_0.7234_0.9321_0.972.png
                gene_name: APOB48R
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 93 percent done.
APOBEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.042617e-02	ci left: 9.289561e-01	ci right 9.387893e-01	k: 9340	n:10000
Cons ci ratio: 4.696672e-02	ci left: 4.008357e-01	ci right 4.202165e-01	k: 4105	n:10000
KS ci ratio: 2.689535e-02	ci left: 6.706551e-01	ci right 6.890400e-01	k: 6799	n:10000
APOBEC1   10000 perm   1 sec   (6819 perm/sec)   p_kst 6.799000e-01   p_cons 4.105000e-01   p_joint 9.340000e-01

Outputting figure to mutsig2_images.part000000000009/APOBEC1.2_731_10000_0.6799_0.4105_0.934.png
                gene_name: APOBEC1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 95 percent done.
APOBEC3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.880239e-03	ci left: 9.666774e-01	ci right 9.734451e-01	k: 9702	n:10000
KS ci ratio: 4.049311e-02	ci left: 4.738613e-01	ci right 4.935482e-01	k: 4837	n:10000
APOBEC3D   10000 perm   2 sec   (6570 perm/sec)   p_kst 4.837000e-01   p_cons 9.702000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/APOBEC3D.2_1189_10000_0.4837_0.9702_1.png
                gene_name: APOBEC3D
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
APOBEC3F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.535413e-02	ci left: 3.246562e-01	ci right 3.432406e-01	k: 3339	n:10000
KS ci ratio: 3.463711e-02	ci left: 5.517079e-01	ci right 5.712563e-01	k: 5615	n:10000
APOBEC3F   10000 perm   2 sec   (6509 perm/sec)   p_kst 5.615000e-01   p_cons 3.339000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000009/APOBEC3F.2_1289_10000_0.5615_0.3339_1.png
                gene_name: APOBEC3F
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000009
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 9 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1702>
Subject: Job 9893820: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1702>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000010> was used as the working directory.
Started at Fri Oct  5 23:53:21 2012
Results reported at Sat Oct  6 04:51:28 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000010.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000010.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 10  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000010.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  18086.93 sec.
    Max Memory :      6393 MB
    Max Swap   :      8868 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
10
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 10
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 10: processing genes 812 - 902
Calculating significance of each gene.
Using projection method.
812	AQP2	6.004879e-01
813	AQP3	3.492897e-01
814	AQP4	1.614738e-01
815	AQP5	7.164276e-01
816	AQP6	4.574182e-01
817	AQP7	8.115391e-01
818	AQP8	6.397056e-01
819	AQP9	1.702518e-02
820	AQPEP	1.861146e-02
821	AQR	8.361514e-01
822	AR	7.919037e-02
823	ARAF	6.176305e-01
824	ARAP1	7.861355e-01
825	ARAP2	1.456818e-02
826	ARAP3	8.012882e-01
827	ARC	2.172496e-01
828	ARCN1	5.430241e-01
829	AREG	1
830	ARF1	1
831	ARF3	1
832	ARF4	4.935003e-02
833	ARF5	1
834	ARF6	6.469109e-01
835	ARFGAP1	8.873226e-01
836	ARFGAP2	6.159352e-01
837	ARFGAP3	5.371385e-01
In gene ARFGEF1 the following bins exceed PROBCAP:
    COAD-AA-3852	categ 6	N = 5705    n = 1	mu =   3.62e-07
838	ARFGEF1	2.548268e-01
839	ARFGEF2	9.412271e-01
840	ARFIP1	4.465903e-03
841	ARFIP2	2.950071e-01
842	ARFRP1	1
843	ARG1	4.500578e-01
844	ARG2	7.454087e-02
845	ARGFX	2.338909e-01
846	ARGLU1	8.061527e-01
847	ARHGAP1	1
848	ARHGAP10	9.382934e-01
849	ARHGAP11A	4.455009e-01
850	ARHGAP11B	5.490954e-01
851	ARHGAP12	4.439314e-01
852	ARHGAP15	3.825213e-04
853	ARHGAP17	8.648835e-01
854	ARHGAP18	3.895778e-01
855	ARHGAP19	1.447352e-01
856	ARHGAP20	1.001021e-02
857	ARHGAP21	2.393109e-01
858	ARHGAP22	7.159193e-01
In gene ARHGAP24 the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 2399    n = 1	mu =   7.59e-07
859	ARHGAP24	1.824991e-01
860	ARHGAP25	3.680787e-01
861	ARHGAP26	6.354440e-01
862	ARHGAP27	4.962152e-02
863	ARHGAP28	4.482845e-02
864	ARHGAP29	3.952333e-01
865	ARHGAP30	8.130492e-01
866	ARHGAP31	6.889297e-01
867	ARHGAP32	9.883193e-01
868	ARHGAP33	4.148751e-01
869	ARHGAP36	2.978845e-02
870	ARHGAP39	1
871	ARHGAP4	9.955968e-01
872	ARHGAP5	9.142587e-02
873	ARHGAP6	9.155208e-01
874	ARHGAP8	6.828068e-01
875	ARHGAP9	1.538953e-01
876	ARHGDIA	1
877	ARHGDIB	3.204696e-02
878	ARHGDIG	4.916204e-01
In gene ARHGEF1 the following bins exceed PROBCAP:
    READ-AG-A01L	categ 6	N = 2848    n = 1	mu =   3.23e-07
879	ARHGEF1	2.634092e-01
880	ARHGEF10	5.897762e-01
881	ARHGEF10L	8.839240e-01
882	ARHGEF11	2.183305e-01
883	ARHGEF12	9.016810e-01
884	ARHGEF15	7.748794e-01
885	ARHGEF16	6.825801e-01
886	ARHGEF17	9.946147e-01
887	ARHGEF18	6.017453e-01
888	ARHGEF19	1
889	ARHGEF2	5.080330e-01
890	ARHGEF3	5.745399e-01
891	ARHGEF35	1
892	ARHGEF37	7.312139e-01
893	ARHGEF38	2.643707e-01
894	ARHGEF4	5.968033e-01
895	ARHGEF5	4.667141e-02
896	ARHGEF6	6.881208e-02
897	ARHGEF7	9.436283e-02
In gene ARHGEF9 the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 1591    n = 1	mu =   7.59e-07
898	ARHGEF9	1.406230e-01
In gene ARID1A the following bins exceed PROBCAP:
    READ-AG-3574	categ 6	N = 5797    n = 1	mu =   1.03e-07
899	ARID1A	1.071454e-06
900	ARID1B	3.462748e-02
901	ARID2	4.762359e-03
902	ARID3A	9.186719e-01
Done

Running MutSig 2:
Scatter job 10: processing genes 812 - 902
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ARID1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
Cons ci ratio: 1.246431e-01	ci left: 8.436377e-02	ci right 9.567638e-02	k: 899	n:10000
KS ci ratio: 1.206345e-01	ci left: 8.971071e-02	ci right 1.013261e-01	k: 954	n:10000
ARID1A   10000 perm   3 sec   (3112 perm/sec)   p_kst 9.540000e-02   p_cons 8.990000e-02   p_joint 6.190000e-02

Joint ci ratio: 8.043316e-02	ci left: 1.018644e-01	ci right 1.104505e-01	k: 2122	n:20000
Cons ci ratio: 8.739280e-02	ci left: 8.739173e-02	ci right 9.542751e-02	k: 1827	n:20000
KS ci ratio: 8.643344e-02	ci left: 8.920534e-02	ci right 9.731335e-02	k: 1864	n:20000
ARID1A   20000 perm   9 sec   (2252 perm/sec)   p_kst 9.320000e-02   p_cons 9.135000e-02   p_joint 1.061000e-01

Outputting figure to mutsig2_images.part000000000010/ARID1A.22_6938_20000_0.0932_0.09135_0.1061.png
                gene_name: ARID1A
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 1 percent done.
ARID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
KS ci ratio: 1.416829e-01	ci left: 6.604181e-02	ci right 7.620974e-02	k: 710	n:10000
ARID2   10000 perm   3 sec   (3841 perm/sec)   p_kst 7.100000e-02   p_cons 1.200000e-03   p_joint 0

Joint ci ratio: 4.611327e-01	ci left: 2.773589e-03	ci right 4.475763e-03	k: 71	n:20000
Cons ci ratio: 8.549436e-01	ci left: 6.109296e-04	ci right 1.543998e-03	k: 20	n:20000
KS ci ratio: 1.051262e-01	ci left: 6.157304e-02	ci right 6.845409e-02	k: 1299	n:20000
ARID2   20000 perm   6 sec   (3477 perm/sec)   p_kst 6.495000e-02   p_cons 1.000000e-03   p_joint 3.550000e-03

Joint ci ratio: 5.595332e-01	ci left: 1.179942e-03	ci right 2.120815e-03	k: 48	n:30000
Cons ci ratio: 5.484339e-01	ci left: 1.237277e-03	ci right 2.196709e-03	k: 50	n:30000
KS ci ratio: 8.626237e-02	ci left: 6.161532e-02	ci right 6.720274e-02	k: 1931	n:30000
ARID2   30000 perm   9 sec   (3390 perm/sec)   p_kst 6.436667e-02   p_cons 1.666667e-03   p_joint 1.600000e-03

Joint ci ratio: 5.282026e-01	ci left: 1.014319e-03	ci right 1.761095e-03	k: 54	n:40000
Cons ci ratio: 4.492219e-01	ci left: 1.475083e-03	ci right 2.349770e-03	k: 75	n:40000
KS ci ratio: 7.430567e-02	ci left: 6.262780e-02	ci right 6.748558e-02	k: 2601	n:40000
ARID2   40000 perm   12 sec   (3301 perm/sec)   p_kst 6.502500e-02   p_cons 1.875000e-03   p_joint 1.350000e-03

Joint ci ratio: 4.821953e-01	ci left: 1.003451e-03	ci right 1.656661e-03	k: 65	n:50000
Cons ci ratio: 4.198981e-01	ci left: 1.376001e-03	ci right 2.123757e-03	k: 86	n:50000
KS ci ratio: 6.656519e-02	ci left: 6.269693e-02	ci right 6.703376e-02	k: 3242	n:50000
ARID2   50000 perm   15 sec   (3243 perm/sec)   p_kst 6.484000e-02   p_cons 1.720000e-03   p_joint 1.300000e-03

Joint ci ratio: 4.682523e-01	ci left: 8.948754e-04	ci right 1.455176e-03	k: 69	n:60000
Cons ci ratio: 3.840512e-01	ci left: 1.401408e-03	ci right 2.081577e-03	k: 103	n:60000
KS ci ratio: 6.067054e-02	ci left: 6.307302e-02	ci right 6.703584e-02	k: 3902	n:60000
ARID2   60000 perm   19 sec   (3191 perm/sec)   p_kst 6.503333e-02   p_cons 1.716667e-03   p_joint 1.150000e-03

Joint ci ratio: 4.436021e-01	ci left: 8.681973e-04	ci right 1.374622e-03	k: 77	n:70000
Cons ci ratio: 3.545882e-01	ci left: 1.434524e-03	ci right 2.065074e-03	k: 121	n:70000
KS ci ratio: 5.608777e-02	ci left: 6.339614e-02	ci right 6.706857e-02	k: 4565	n:70000
ARID2   70000 perm   23 sec   (3105 perm/sec)   p_kst 6.521429e-02   p_cons 1.728571e-03   p_joint 1.100000e-03

Joint ci ratio: 4.408139e-01	ci left: 7.707710e-04	ci right 1.216697e-03	k: 78	n:80000
Cons ci ratio: 3.208377e-01	ci left: 1.564174e-03	ci right 2.172862e-03	k: 148	n:80000
KS ci ratio: 5.230088e-02	ci left: 6.389390e-02	ci right 6.733768e-02	k: 5248	n:80000
ARID2   80000 perm   26 sec   (3045 perm/sec)   p_kst 6.560000e-02   p_cons 1.850000e-03   p_joint 9.750000e-04

Joint ci ratio: 4.129953e-01	ci left: 7.942319e-04	ci right 1.216774e-03	k: 89	n:90000
Cons ci ratio: 3.003645e-01	ci left: 1.605548e-03	ci right 2.182871e-03	k: 169	n:90000
KS ci ratio: 4.927015e-02	ci left: 6.408981e-02	ci right 6.733825e-02	k: 5913	n:90000
ARID2   90000 perm   30 sec   (3020 perm/sec)   p_kst 6.570000e-02   p_cons 1.877778e-03   p_joint 9.888889e-04

Joint ci ratio: 4.250008e-01	ci left: 6.700705e-04	ci right 1.039873e-03	k: 84	n:100000
Cons ci ratio: 2.927308e-01	ci left: 1.528290e-03	ci right 2.061274e-03	k: 178	n:100000
KS ci ratio: 4.670799e-02	ci left: 6.426105e-02	ci right 6.734420e-02	k: 6579	n:100000
ARID2   100000 perm   33 sec   (2995 perm/sec)   p_kst 6.579000e-02   p_cons 1.780000e-03   p_joint 8.400000e-04

Joint ci ratio: 4.130333e-01	ci left: 6.498153e-04	ci right 9.955631e-04	k: 89	n:110000
Cons ci ratio: 2.826533e-01	ci left: 1.499008e-03	ci right 2.000576e-03	k: 191	n:110000
KS ci ratio: 4.457390e-02	ci left: 6.422480e-02	ci right 6.716178e-02	k: 7225	n:110000
ARID2   110000 perm   37 sec   (2972 perm/sec)   p_kst 6.568182e-02   p_cons 1.736364e-03   p_joint 8.090909e-04

Joint ci ratio: 4.177184e-01	ci left: 5.807348e-04	ci right 8.942091e-04	k: 87	n:120000
Cons ci ratio: 2.664810e-01	ci left: 1.560340e-03	ci right 2.047576e-03	k: 215	n:120000
KS ci ratio: 4.262107e-02	ci left: 6.444481e-02	ci right 6.725955e-02	k: 7901	n:120000
ARID2   120000 perm   41 sec   (2931 perm/sec)   p_kst 6.584167e-02   p_cons 1.791667e-03   p_joint 7.250000e-04

Joint ci ratio: 4.063381e-01	ci left: 5.705368e-04	ci right 8.678523e-04	k: 92	n:130000
Cons ci ratio: 2.554804e-01	ci left: 1.576912e-03	ci right 2.045758e-03	k: 234	n:130000
KS ci ratio: 4.096053e-02	ci left: 6.446572e-02	ci right 6.716907e-02	k: 8555	n:130000
ARID2   130000 perm   45 sec   (2897 perm/sec)   p_kst 6.580769e-02   p_cons 1.800000e-03   p_joint 7.076923e-04

Joint ci ratio: 3.978764e-01	ci left: 5.554650e-04	ci right 8.373110e-04	k: 96	n:140000
Cons ci ratio: 2.447750e-01	ci left: 1.604879e-03	ci right 2.059009e-03	k: 255	n:140000
KS ci ratio: 3.935673e-02	ci left: 6.486765e-02	ci right 6.747893e-02	k: 9263	n:140000
ARID2   140000 perm   49 sec   (2870 perm/sec)   p_kst 6.616429e-02   p_cons 1.821429e-03   p_joint 6.857143e-04

Joint ci ratio: 3.938435e-01	ci left: 5.304384e-04	ci right 7.961472e-04	k: 98	n:150000
Cons ci ratio: 2.379070e-01	ci left: 1.591840e-03	ci right 2.027779e-03	k: 270	n:150000
KS ci ratio: 3.810392e-02	ci left: 6.464949e-02	ci right 6.716732e-02	k: 9885	n:150000
ARID2   150000 perm   53 sec   (2842 perm/sec)   p_kst 6.590000e-02   p_cons 1.800000e-03   p_joint 6.533333e-04

Joint ci ratio: 2.611487e-01	ci left: 1.222756e-03	ci right 1.595687e-03	k: 224	n:160000
Cons ci ratio: 2.311819e-01	ci left: 1.586474e-03	ci right 2.006909e-03	k: 286	n:160000
KS ci ratio: 3.686603e-02	ci left: 6.478199e-02	ci right 6.722126e-02	k: 10559	n:160000
ARID2   160000 perm   57 sec   (2815 perm/sec)   p_kst 6.599375e-02   p_cons 1.787500e-03   p_joint 1.400000e-03

Joint ci ratio: 2.502584e-01	ci left: 1.260943e-03	ci right 1.626986e-03	k: 244	n:170000
Cons ci ratio: 2.261209e-01	ci left: 1.565241e-03	ci right 1.969701e-03	k: 299	n:170000
KS ci ratio: 3.570062e-02	ci left: 6.504007e-02	ci right 6.741005e-02	k: 11257	n:170000
ARID2   170000 perm   61 sec   (2788 perm/sec)   p_kst 6.621765e-02   p_cons 1.758824e-03   p_joint 1.435294e-03

Joint ci ratio: 2.507814e-01	ci left: 1.185678e-03	ci right 1.530703e-03	k: 243	n:180000
Cons ci ratio: 2.182570e-01	ci left: 1.593707e-03	ci right 1.989282e-03	k: 321	n:180000
KS ci ratio: 3.471854e-02	ci left: 6.498949e-02	ci right 6.729117e-02	k: 11904	n:180000
ARID2   180000 perm   65 sec   (2756 perm/sec)   p_kst 6.613333e-02   p_cons 1.783333e-03   p_joint 1.350000e-03

Joint ci ratio: 2.507904e-01	ci left: 1.123269e-03	ci right 1.450147e-03	k: 243	n:190000
Cons ci ratio: 2.117779e-01	ci left: 1.609425e-03	ci right 1.995503e-03	k: 341	n:190000
KS ci ratio: 3.382339e-02	ci left: 6.490849e-02	ci right 6.714688e-02	k: 12544	n:190000
ARID2   190000 perm   70 sec   (2709 perm/sec)   p_kst 6.602105e-02   p_cons 1.794737e-03   p_joint 1.278947e-03

Joint ci ratio: 2.044340e-01	ci left: 1.647445e-03	ci right 2.027227e-03	k: 366	n:200000
Cons ci ratio: 2.061290e-01	ci left: 1.618984e-03	ci right 1.995691e-03	k: 360	n:200000
KS ci ratio: 3.295796e-02	ci left: 6.497025e-02	ci right 6.715235e-02	k: 13211	n:200000
ARID2   200000 perm   75 sec   (2673 perm/sec)   p_kst 6.605500e-02   p_cons 1.800000e-03   p_joint 1.830000e-03

Joint ci ratio: 1.998582e-01	ci left: 1.645850e-03	ci right 2.015737e-03	k: 383	n:210000
Cons ci ratio: 2.017085e-01	ci left: 1.614190e-03	ci right 1.980734e-03	k: 376	n:210000
KS ci ratio: 3.216442e-02	ci left: 6.499370e-02	ci right 6.712306e-02	k: 13871	n:210000
ARID2   210000 perm   80 sec   (2639 perm/sec)   p_kst 6.605238e-02   p_cons 1.790476e-03   p_joint 1.823810e-03

Joint ci ratio: 2.001278e-01	ci left: 1.566714e-03	ci right 1.919349e-03	k: 382	n:220000
Cons ci ratio: 1.973094e-01	ci left: 1.614230e-03	ci right 1.971828e-03	k: 393	n:220000
KS ci ratio: 3.142789e-02	ci left: 6.500657e-02	ci right 6.708670e-02	k: 14529	n:220000
ARID2   220000 perm   84 sec   (2616 perm/sec)   p_kst 6.604091e-02   p_cons 1.786364e-03   p_joint 1.736364e-03

Joint ci ratio: 2.096731e-01	ci left: 1.358335e-03	ci right 1.680524e-03	k: 348	n:230000
Cons ci ratio: 1.917887e-01	ci left: 1.639178e-03	ci right 1.990958e-03	k: 416	n:230000
KS ci ratio: 3.072784e-02	ci left: 6.506632e-02	ci right 6.710115e-02	k: 15198	n:230000
ARID2   230000 perm   89 sec   (2590 perm/sec)   p_kst 6.607826e-02   p_cons 1.808696e-03   p_joint 1.513043e-03

Joint ci ratio: 1.715515e-01	ci left: 1.984596e-03	ci right 2.360922e-03	k: 520	n:240000
Cons ci ratio: 1.873478e-01	ci left: 1.650259e-03	ci right 1.995284e-03	k: 436	n:240000
KS ci ratio: 3.013464e-02	ci left: 6.486917e-02	ci right 6.685800e-02	k: 15806	n:240000
ARID2   240000 perm   94 sec   (2567 perm/sec)   p_kst 6.585833e-02   p_cons 1.816667e-03   p_joint 2.166667e-03

Joint ci ratio: 1.680402e-01	ci left: 1.989473e-03	ci right 2.358221e-03	k: 542	n:250000
Cons ci ratio: 1.838072e-01	ci left: 1.649090e-03	ci right 1.986628e-03	k: 453	n:250000
KS ci ratio: 2.951680e-02	ci left: 6.492650e-02	ci right 6.687558e-02	k: 16474	n:250000
ARID2   250000 perm   99 sec   (2538 perm/sec)   p_kst 6.589600e-02   p_cons 1.812000e-03   p_joint 2.168000e-03

Joint ci ratio: 1.663670e-01	ci left: 1.953489e-03	ci right 2.311601e-03	k: 553	n:260000
Cons ci ratio: 1.795080e-01	ci left: 1.666432e-03	ci right 1.998676e-03	k: 475	n:260000
KS ci ratio: 2.894089e-02	ci left: 6.495688e-02	ci right 6.686819e-02	k: 17136	n:260000
ARID2   260000 perm   104 sec   (2504 perm/sec)   p_kst 6.590769e-02   p_cons 1.826923e-03   p_joint 2.126923e-03

Joint ci ratio: 1.630170e-01	ci left: 1.962812e-03	ci right 2.314678e-03	k: 576	n:270000
Cons ci ratio: 1.763863e-01	ci left: 1.664871e-03	ci right 1.990416e-03	k: 492	n:270000
KS ci ratio: 2.842309e-02	ci left: 6.487498e-02	ci right 6.674917e-02	k: 17768	n:270000
ARID2   270000 perm   109 sec   (2479 perm/sec)   p_kst 6.580741e-02   p_cons 1.822222e-03   p_joint 2.133333e-03

Joint ci ratio: 1.646030e-01	ci left: 1.855028e-03	ci right 2.191127e-03	k: 565	n:280000
Cons ci ratio: 1.737637e-01	ci left: 1.656635e-03	ci right 1.975247e-03	k: 507	n:280000
KS ci ratio: 2.790777e-02	ci left: 6.490566e-02	ci right 6.674619e-02	k: 18430	n:280000
ARID2   280000 perm   114 sec   (2446 perm/sec)   p_kst 6.582143e-02   p_cons 1.810714e-03   p_joint 2.017857e-03

Joint ci ratio: 1.763975e-01	ci left: 1.550044e-03	ci right 1.853157e-03	k: 492	n:290000
Cons ci ratio: 1.944098e-01	ci left: 1.263916e-03	ci right 1.539306e-03	k: 405	n:290000
KS ci ratio: 2.741028e-02	ci left: 6.497563e-02	ci right 6.678478e-02	k: 19104	n:290000
ARID2   290000 perm   120 sec   (2423 perm/sec)   p_kst 6.587586e-02   p_cons 1.396552e-03   p_joint 1.696552e-03

Joint ci ratio: 1.730930e-01	ci left: 1.558940e-03	ci right 1.857484e-03	k: 511	n:300000
Cons ci ratio: 1.902371e-01	ci left: 1.278898e-03	ci right 1.550880e-03	k: 423	n:300000
KS ci ratio: 2.691735e-02	ci left: 6.513727e-02	ci right 6.691780e-02	k: 19807	n:300000
ARID2   300000 perm   126 sec   (2386 perm/sec)   p_kst 6.602333e-02   p_cons 1.410000e-03   p_joint 1.703333e-03

Joint ci ratio: 1.804865e-01	ci left: 1.382232e-03	ci right 1.659479e-03	k: 470	n:310000
Cons ci ratio: 1.869586e-01	ci left: 1.283746e-03	ci right 1.551520e-03	k: 438	n:310000
KS ci ratio: 2.645217e-02	ci left: 6.527912e-02	ci right 6.703222e-02	k: 20507	n:310000
ARID2   310000 perm   131 sec   (2358 perm/sec)   p_kst 6.615161e-02   p_cons 1.412903e-03   p_joint 1.516129e-03

Joint ci ratio: 1.778628e-01	ci left: 1.380825e-03	ci right 1.653330e-03	k: 484	n:320000
Cons ci ratio: 1.840470e-01	ci left: 1.285348e-03	ci right 1.548814e-03	k: 452	n:320000
KS ci ratio: 2.600897e-02	ci left: 6.541857e-02	ci right 6.714554e-02	k: 21209	n:320000
ARID2   320000 perm   137 sec   (2334 perm/sec)   p_kst 6.627812e-02   p_cons 1.412500e-03   p_joint 1.512500e-03

Joint ci ratio: 1.593563e-01	ci left: 1.684436e-03	ci right 1.978968e-03	k: 603	n:330000
Cons ci ratio: 1.693387e-01	ci left: 1.483924e-03	ci right 1.761309e-03	k: 534	n:330000
KS ci ratio: 2.565008e-02	ci left: 6.524857e-02	ci right 6.694693e-02	k: 21811	n:330000
ARID2   330000 perm   143 sec   (2313 perm/sec)   p_kst 6.609394e-02   p_cons 1.618182e-03   p_joint 1.827273e-03

Joint ci ratio: 1.570336e-01	ci left: 1.685739e-03	ci right 1.975798e-03	k: 621	n:340000
Cons ci ratio: 1.668620e-01	ci left: 1.485358e-03	ci right 1.758543e-03	k: 550	n:340000
KS ci ratio: 2.530200e-02	ci left: 6.510628e-02	ci right 6.677760e-02	k: 22419	n:340000
ARID2   340000 perm   148 sec   (2296 perm/sec)   p_kst 6.593824e-02   p_cons 1.617647e-03   p_joint 1.826471e-03

Joint ci ratio: 1.574185e-01	ci left: 1.629338e-03	ci right 1.910443e-03	k: 618	n:350000
Cons ci ratio: 1.653696e-01	ci left: 1.470302e-03	ci right 1.738058e-03	k: 560	n:350000
KS ci ratio: 2.493469e-02	ci left: 6.513417e-02	ci right 6.678159e-02	k: 23084	n:350000
ARID2   350000 perm   154 sec   (2278 perm/sec)   p_kst 6.595429e-02   p_cons 1.600000e-03   p_joint 1.765714e-03

Joint ci ratio: 1.597664e-01	ci left: 1.536056e-03	ci right 1.805400e-03	k: 600	n:360000
Cons ci ratio: 1.630607e-01	ci left: 1.472078e-03	ci right 1.736048e-03	k: 576	n:360000
KS ci ratio: 2.458681e-02	ci left: 6.514135e-02	ci right 6.676564e-02	k: 23742	n:360000
ARID2   360000 perm   159 sec   (2259 perm/sec)   p_kst 6.595000e-02   p_cons 1.600000e-03   p_joint 1.666667e-03

Joint ci ratio: 1.576814e-01	ci left: 1.536067e-03	ci right 1.801565e-03	k: 616	n:370000
Cons ci ratio: 1.616671e-01	ci left: 1.458221e-03	ci right 1.717253e-03	k: 586	n:370000
KS ci ratio: 2.425362e-02	ci left: 6.514561e-02	ci right 6.674768e-02	k: 24399	n:370000
ARID2   370000 perm   165 sec   (2236 perm/sec)   p_kst 6.594324e-02   p_cons 1.583784e-03   p_joint 1.664865e-03

Joint ci ratio: 1.551856e-01	ci left: 1.546216e-03	ci right 1.808845e-03	k: 636	n:380000
Cons ci ratio: 1.580703e-01	ci left: 1.488058e-03	ci right 1.745953e-03	k: 613	n:380000
KS ci ratio: 2.393414e-02	ci left: 6.514716e-02	ci right 6.672788e-02	k: 25055	n:380000
ARID2   380000 perm   173 sec   (2201 perm/sec)   p_kst 6.593421e-02   p_cons 1.613158e-03   p_joint 1.673684e-03

Joint ci ratio: 1.585918e-01	ci left: 1.440050e-03	ci right 1.690526e-03	k: 609	n:390000
Cons ci ratio: 1.565487e-01	ci left: 1.479461e-03	ci right 1.733165e-03	k: 625	n:390000
KS ci ratio: 2.363385e-02	ci left: 6.511307e-02	ci right 6.667287e-02	k: 25697	n:390000
ARID2   390000 perm   179 sec   (2182 perm/sec)   p_kst 6.588974e-02   p_cons 1.602564e-03   p_joint 1.561538e-03

Joint ci ratio: 1.585949e-01	ci left: 1.404047e-03	ci right 1.648265e-03	k: 609	n:400000
Cons ci ratio: 1.547064e-01	ci left: 1.478514e-03	ci right 1.728795e-03	k: 640	n:400000
KS ci ratio: 2.333273e-02	ci left: 6.514296e-02	ci right 6.668333e-02	k: 26364	n:400000
ARID2   400000 perm   185 sec   (2163 perm/sec)   p_kst 6.591000e-02   p_cons 1.600000e-03   p_joint 1.522500e-03

Joint ci ratio: 1.575664e-01	ci left: 1.388541e-03	ci right 1.628348e-03	k: 617	n:410000
Cons ci ratio: 1.529276e-01	ci left: 1.477630e-03	ci right 1.724622e-03	k: 655	n:410000
KS ci ratio: 2.303508e-02	ci left: 6.521276e-02	ci right 6.673485e-02	k: 27048	n:410000
ARID2   410000 perm   191 sec   (2144 perm/sec)   p_kst 6.597073e-02   p_cons 1.597561e-03   p_joint 1.504878e-03

Joint ci ratio: 1.579537e-01	ci left: 1.348618e-03	ci right 1.582156e-03	k: 614	n:420000
Cons ci ratio: 1.522348e-01	ci left: 1.456187e-03	ci right 1.698392e-03	k: 661	n:420000
KS ci ratio: 2.276304e-02	ci left: 6.520119e-02	ci right 6.670480e-02	k: 27699	n:420000
ARID2   420000 perm   197 sec   (2127 perm/sec)   p_kst 6.595000e-02   p_cons 1.573810e-03   p_joint 1.461905e-03

Joint ci ratio: 1.563106e-01	ci left: 1.346298e-03	ci right 1.576782e-03	k: 627	n:430000
Cons ci ratio: 1.499853e-01	ci left: 1.467076e-03	ci right 1.707162e-03	k: 681	n:430000
KS ci ratio: 2.250552e-02	ci left: 6.516251e-02	ci right 6.664800e-02	k: 28338	n:430000
ARID2   430000 perm   204 sec   (2109 perm/sec)   p_kst 6.590233e-02   p_cons 1.583721e-03   p_joint 1.458140e-03

Joint ci ratio: 1.568141e-01	ci left: 1.306964e-03	ci right 1.531502e-03	k: 623	n:440000
Cons ci ratio: 1.486836e-01	ci left: 1.459986e-03	ci right 1.696655e-03	k: 693	n:440000
KS ci ratio: 2.225120e-02	ci left: 6.515506e-02	ci right 6.662339e-02	k: 28990	n:440000
ARID2   440000 perm   211 sec   (2084 perm/sec)   p_kst 6.588636e-02   p_cons 1.575000e-03   p_joint 1.415909e-03

Joint ci ratio: 1.552059e-01	ci left: 1.305681e-03	ci right 1.527485e-03	k: 636	n:450000
Cons ci ratio: 1.469987e-01	ci left: 1.461783e-03	ci right 1.695821e-03	k: 709	n:450000
KS ci ratio: 2.200134e-02	ci left: 6.517015e-02	ci right 6.662211e-02	k: 29652	n:450000
ARID2   450000 perm   219 sec   (2058 perm/sec)   p_kst 6.589333e-02   p_cons 1.575556e-03   p_joint 1.413333e-03

Joint ci ratio: 1.619688e-01	ci left: 1.168730e-03	ci right 1.376763e-03	k: 584	n:460000
Cons ci ratio: 1.452697e-01	ci left: 1.465610e-03	ci right 1.697262e-03	k: 726	n:460000
KS ci ratio: 2.176355e-02	ci left: 6.516304e-02	ci right 6.659896e-02	k: 30304	n:460000
ARID2   460000 perm   226 sec   (2038 perm/sec)   p_kst 6.587826e-02   p_cons 1.578261e-03   p_joint 1.269565e-03

Joint ci ratio: 1.633751e-01	ci left: 1.123451e-03	ci right 1.325331e-03	k: 574	n:470000
Cons ci ratio: 1.433111e-01	ci left: 1.475445e-03	ci right 1.705238e-03	k: 746	n:470000
KS ci ratio: 2.152550e-02	ci left: 6.520077e-02	ci right 6.662161e-02	k: 30977	n:470000
ARID2   470000 perm   233 sec   (2021 perm/sec)   p_kst 6.590851e-02   p_cons 1.587234e-03   p_joint 1.221277e-03

Joint ci ratio: 1.619731e-01	ci left: 1.120031e-03	ci right 1.319401e-03	k: 584	n:480000
Cons ci ratio: 1.422682e-01	ci left: 1.466804e-03	ci right 1.693448e-03	k: 757	n:480000
KS ci ratio: 2.129977e-02	ci left: 6.521006e-02	ci right 6.661602e-02	k: 31637	n:480000
ARID2   480000 perm   239 sec   (2006 perm/sec)   p_kst 6.591042e-02   p_cons 1.577083e-03   p_joint 1.216667e-03

Joint ci ratio: 1.607419e-01	ci left: 1.114799e-03	ci right 1.311583e-03	k: 593	n:490000
Cons ci ratio: 1.411558e-01	ci left: 1.460490e-03	ci right 1.684245e-03	k: 769	n:490000
KS ci ratio: 2.108764e-02	ci left: 6.518046e-02	ci right 6.657162e-02	k: 32278	n:490000
ARID2   490000 perm   246 sec   (1991 perm/sec)   p_kst 6.587347e-02   p_cons 1.569388e-03   p_joint 1.210204e-03

Joint ci ratio: 1.592741e-01	ci left: 1.113622e-03	ci right 1.308232e-03	k: 604	n:500000
Cons ci ratio: 1.395340e-01	ci left: 1.466016e-03	ci right 1.687823e-03	k: 787	n:500000
KS ci ratio: 2.087833e-02	ci left: 6.517202e-02	ci right 6.654902e-02	k: 32929	n:500000
ARID2   500000 perm   253 sec   (1978 perm/sec)   p_kst 6.585800e-02   p_cons 1.574000e-03   p_joint 1.208000e-03

Joint ci ratio: 1.381386e-01	ci left: 1.467554e-03	ci right 1.687190e-03	k: 803	n:510000
Cons ci ratio: 1.383110e-01	ci left: 1.463768e-03	ci right 1.683133e-03	k: 801	n:510000
KS ci ratio: 2.067085e-02	ci left: 6.518934e-02	ci right 6.655286e-02	k: 33593	n:510000
ARID2   510000 perm   260 sec   (1964 perm/sec)   p_kst 6.586863e-02   p_cons 1.570588e-03   p_joint 1.574510e-03

Joint ci ratio: 1.373728e-01	ci left: 1.456042e-03	ci right 1.672649e-03	k: 812	n:520000
Cons ci ratio: 1.371196e-01	ci left: 1.461614e-03	ci right 1.678616e-03	k: 815	n:520000
KS ci ratio: 2.047904e-02	ci left: 6.514864e-02	ci right 6.649851e-02	k: 34227	n:520000
ARID2   520000 perm   267 sec   (1950 perm/sec)   p_kst 6.582115e-02   p_cons 1.567308e-03   p_joint 1.561538e-03

Joint ci ratio: 1.372902e-01	ci left: 1.430390e-03	ci right 1.643043e-03	k: 813	n:530000
Cons ci ratio: 1.362052e-01	ci left: 1.454081e-03	ci right 1.668408e-03	k: 826	n:530000
KS ci ratio: 2.029153e-02	ci left: 6.511517e-02	ci right 6.645185e-02	k: 34864	n:530000
ARID2   530000 perm   274 sec   (1937 perm/sec)   p_kst 6.578113e-02   p_cons 1.558491e-03   p_joint 1.533962e-03

Joint ci ratio: 1.226239e-01	ci left: 1.773038e-03	ci right 2.006432e-03	k: 1019	n:540000
Cons ci ratio: 1.345075e-01	ci left: 1.464726e-03	ci right 1.677716e-03	k: 847	n:540000
KS ci ratio: 2.010544e-02	ci left: 6.510511e-02	ci right 6.642919e-02	k: 35513	n:540000
ARID2   540000 perm   280 sec   (1925 perm/sec)   p_kst 6.576481e-02   p_cons 1.568519e-03   p_joint 1.887037e-03

Joint ci ratio: 1.218505e-01	ci left: 1.763714e-03	ci right 1.994311e-03	k: 1032	n:550000
Cons ci ratio: 1.331020e-01	ci left: 1.469727e-03	ci right 1.681034e-03	k: 865	n:550000
KS ci ratio: 1.991584e-02	ci left: 6.514795e-02	ci right 6.646026e-02	k: 36191	n:550000
ARID2   550000 perm   287 sec   (1913 perm/sec)   p_kst 6.580182e-02   p_cons 1.572727e-03   p_joint 1.876364e-03

Joint ci ratio: 1.208603e-01	ci left: 1.761655e-03	ci right 1.989976e-03	k: 1049	n:560000
Cons ci ratio: 1.315163e-01	ci left: 1.479741e-03	ci right 1.689755e-03	k: 886	n:560000
KS ci ratio: 1.974640e-02	ci left: 6.509689e-02	ci right 6.639689e-02	k: 36817	n:560000
ARID2   560000 perm   295 sec   (1901 perm/sec)   p_kst 6.574464e-02   p_cons 1.582143e-03   p_joint 1.873214e-03

Joint ci ratio: 1.209777e-01	ci left: 1.727344e-03	ci right 1.951452e-03	k: 1047	n:570000
Cons ci ratio: 1.304183e-01	ci left: 1.479234e-03	ci right 1.687288e-03	k: 901	n:570000
KS ci ratio: 1.956529e-02	ci left: 6.514721e-02	ci right 6.643615e-02	k: 37500	n:570000
ARID2   570000 perm   302 sec   (1889 perm/sec)   p_kst 6.578947e-02   p_cons 1.580702e-03   p_joint 1.836842e-03

Joint ci ratio: 1.201781e-01	ci left: 1.720972e-03	ci right 1.942672e-03	k: 1061	n:580000
Cons ci ratio: 1.294888e-01	ci left: 1.475415e-03	ci right 1.681339e-03	k: 914	n:580000
KS ci ratio: 1.939260e-02	ci left: 6.517354e-02	ci right 6.645149e-02	k: 38170	n:580000
ARID2   580000 perm   309 sec   (1877 perm/sec)   p_kst 6.581034e-02   p_cons 1.575862e-03   p_joint 1.829310e-03

Joint ci ratio: 1.117465e-01	ci left: 1.965022e-03	ci right 2.199233e-03	k: 1227	n:590000
Cons ci ratio: 1.281646e-01	ci left: 1.481574e-03	ci right 1.686082e-03	k: 933	n:590000
KS ci ratio: 1.922732e-02	ci left: 6.518046e-02	ci right 6.644754e-02	k: 38829	n:590000
ARID2   590000 perm   317 sec   (1862 perm/sec)   p_kst 6.581186e-02   p_cons 1.581356e-03   p_joint 2.079661e-03

Joint ci ratio: 1.106257e-01	ci left: 1.972780e-03	ci right 2.205403e-03	k: 1252	n:600000
Cons ci ratio: 1.264821e-01	ci left: 1.497221e-03	ci right 1.700973e-03	k: 958	n:600000
KS ci ratio: 1.906982e-02	ci left: 6.516397e-02	ci right 6.642023e-02	k: 39474	n:600000
ARID2   600000 perm   324 sec   (1850 perm/sec)   p_kst 6.579000e-02   p_cons 1.596667e-03   p_joint 2.086667e-03

Joint ci ratio: 1.097966e-01	ci left: 1.970728e-03	ci right 2.201255e-03	k: 1271	n:610000
Cons ci ratio: 1.252472e-01	ci left: 1.502844e-03	ci right 1.705216e-03	k: 977	n:610000
KS ci ratio: 1.890956e-02	ci left: 6.519049e-02	ci right 6.643659e-02	k: 40145	n:610000
ARID2   610000 perm   332 sec   (1837 perm/sec)   p_kst 6.581148e-02   p_cons 1.601639e-03   p_joint 2.083607e-03

Joint ci ratio: 1.090281e-01	ci left: 1.967180e-03	ci right 2.195577e-03	k: 1289	n:620000
Cons ci ratio: 1.242350e-01	ci left: 1.503605e-03	ci right 1.704324e-03	k: 993	n:620000
KS ci ratio: 1.876978e-02	ci left: 6.510861e-02	ci right 6.634384e-02	k: 40749	n:620000
ARID2   620000 perm   340 sec   (1823 perm/sec)   p_kst 6.572419e-02   p_cons 1.601613e-03   p_joint 2.079032e-03

Joint ci ratio: 1.083586e-01	ci left: 1.960661e-03	ci right 2.186814e-03	k: 1305	n:630000
Cons ci ratio: 1.231860e-01	ci left: 1.505888e-03	ci right 1.705089e-03	k: 1010	n:630000
KS ci ratio: 1.862220e-02	ci left: 6.510048e-02	ci right 6.632574e-02	k: 41398	n:630000
ARID2   630000 perm   348 sec   (1812 perm/sec)   p_kst 6.571111e-02   p_cons 1.603175e-03   p_joint 2.071429e-03

Joint ci ratio: 1.084853e-01	ci left: 1.925463e-03	ci right 2.147833e-03	k: 1302	n:640000
Cons ci ratio: 1.223420e-01	ci left: 1.503561e-03	ci right 1.700994e-03	k: 1024	n:640000
KS ci ratio: 1.846983e-02	ci left: 6.514709e-02	ci right 6.636310e-02	k: 42082	n:640000
ARID2   640000 perm   355 sec   (1801 perm/sec)   p_kst 6.575312e-02   p_cons 1.600000e-03   p_joint 2.034375e-03

Joint ci ratio: 1.104142e-01	ci left: 1.828500e-03	ci right 2.043670e-03	k: 1257	n:650000
Cons ci ratio: 1.213399e-01	ci left: 1.505787e-03	ci right 1.701775e-03	k: 1041	n:650000
KS ci ratio: 1.833307e-02	ci left: 6.511265e-02	ci right 6.631892e-02	k: 42714	n:650000
ARID2   650000 perm   363 sec   (1790 perm/sec)   p_kst 6.571385e-02   p_cons 1.601538e-03   p_joint 1.933846e-03

Joint ci ratio: 1.120794e-01	ci left: 1.746290e-03	ci right 1.955091e-03	k: 1220	n:660000
Cons ci ratio: 1.201915e-01	ci left: 1.512360e-03	ci right 1.707208e-03	k: 1061	n:660000
KS ci ratio: 1.819750e-02	ci left: 6.509135e-02	ci right 6.628822e-02	k: 43354	n:660000
ARID2   660000 perm   371 sec   (1778 perm/sec)   p_kst 6.568788e-02   p_cons 1.607576e-03   p_joint 1.848485e-03

Joint ci ratio: 1.231919e-01	ci left: 1.415980e-03	ci right 1.603298e-03	k: 1010	n:670000
Cons ci ratio: 1.270913e-01	ci left: 1.327781e-03	ci right 1.509410e-03	k: 949	n:670000
KS ci ratio: 1.806051e-02	ci left: 6.510045e-02	ci right 6.628838e-02	k: 44014	n:670000
ARID2   670000 perm   379 sec   (1768 perm/sec)   p_kst 6.569254e-02   p_cons 1.416418e-03   p_joint 1.507463e-03

Joint ci ratio: 1.237461e-01	ci left: 1.382329e-03	ci right 1.566078e-03	k: 1001	n:680000
Cons ci ratio: 1.264940e-01	ci left: 1.321070e-03	ci right 1.500868e-03	k: 958	n:680000
KS ci ratio: 1.791798e-02	ci left: 6.516789e-02	ci right 6.634757e-02	k: 44714	n:680000
ARID2   680000 perm   387 sec   (1757 perm/sec)   p_kst 6.575588e-02   p_cons 1.408824e-03   p_joint 1.472059e-03

Joint ci ratio: 1.246856e-01	ci left: 1.341230e-03	ci right 1.520969e-03	k: 986	n:690000
Cons ci ratio: 1.258400e-01	ci left: 1.315959e-03	ci right 1.494066e-03	k: 968	n:690000
KS ci ratio: 1.778045e-02	ci left: 6.522187e-02	ci right 6.639337e-02	k: 45406	n:690000
ARID2   690000 perm   395 sec   (1746 perm/sec)   p_kst 6.580580e-02   p_cons 1.402899e-03   p_joint 1.428986e-03

Joint ci ratio: 1.235637e-01	ci left: 1.346985e-03	ci right 1.525753e-03	k: 1004	n:700000
Cons ci ratio: 1.248771e-01	ci left: 1.317916e-03	ci right 1.494823e-03	k: 983	n:700000
KS ci ratio: 1.765977e-02	ci left: 6.517902e-02	ci right 6.634172e-02	k: 46031	n:700000
ARID2   700000 perm   404 sec   (1735 perm/sec)   p_kst 6.575857e-02   p_cons 1.404286e-03   p_joint 1.434286e-03

Joint ci ratio: 1.236882e-01	ci left: 1.325283e-03	ci right 1.501361e-03	k: 1002	n:710000
Cons ci ratio: 1.240604e-01	ci left: 1.317094e-03	ci right 1.492649e-03	k: 996	n:710000
KS ci ratio: 1.753509e-02	ci left: 6.518228e-02	ci right 6.633675e-02	k: 46688	n:710000
ARID2   710000 perm   412 sec   (1723 perm/sec)   p_kst 6.575775e-02   p_cons 1.402817e-03   p_joint 1.411268e-03

Joint ci ratio: 1.225927e-01	ci left: 1.331106e-03	ci right 1.506278e-03	k: 1020	n:720000
Cons ci ratio: 1.227735e-01	ci left: 1.327067e-03	ci right 1.501983e-03	k: 1017	n:720000
KS ci ratio: 1.740730e-02	ci left: 6.522560e-02	ci right 6.637234e-02	k: 47374	n:720000
ARID2   720000 perm   421 sec   (1710 perm/sec)   p_kst 6.579722e-02   p_cons 1.412500e-03   p_joint 1.416667e-03

Joint ci ratio: 1.219379e-01	ci left: 1.327480e-03	ci right 1.501173e-03	k: 1031	n:730000
Cons ci ratio: 1.220564e-01	ci left: 1.324823e-03	ci right 1.498350e-03	k: 1029	n:730000
KS ci ratio: 1.728997e-02	ci left: 6.521319e-02	ci right 6.635190e-02	k: 48020	n:730000
ARID2   730000 perm   430 sec   (1697 perm/sec)   p_kst 6.578082e-02   p_cons 1.409589e-03   p_joint 1.412329e-03

Joint ci ratio: 1.211772e-01	ci left: 1.326574e-03	ci right 1.498989e-03	k: 1044	n:740000
Cons ci ratio: 1.211191e-01	ci left: 1.327884e-03	ci right 1.500381e-03	k: 1045	n:740000
KS ci ratio: 1.716064e-02	ci left: 6.530343e-02	ci right 6.643511e-02	k: 48742	n:740000
ARID2   740000 perm   439 sec   (1687 perm/sec)   p_kst 6.586757e-02   p_cons 1.412162e-03   p_joint 1.410811e-03

Joint ci ratio: 1.206591e-01	ci left: 1.320523e-03	ci right 1.491365e-03	k: 1053	n:750000
Cons ci ratio: 1.202031e-01	ci left: 1.330869e-03	ci right 1.502352e-03	k: 1061	n:750000
KS ci ratio: 1.704100e-02	ci left: 6.534216e-02	ci right 6.646653e-02	k: 49427	n:750000
ARID2   750000 perm   448 sec   (1675 perm/sec)   p_kst 6.590267e-02   p_cons 1.414667e-03   p_joint 1.404000e-03

Joint ci ratio: 1.199219e-01	ci left: 1.319738e-03	ci right 1.489362e-03	k: 1066	n:760000
Cons ci ratio: 1.193076e-01	ci left: 1.333780e-03	ci right 1.504267e-03	k: 1077	n:760000
KS ci ratio: 1.692183e-02	ci left: 6.539431e-02	ci right 6.651163e-02	k: 50123	n:760000
ARID2   760000 perm   457 sec   (1661 perm/sec)   p_kst 6.595132e-02   p_cons 1.417105e-03   p_joint 1.402632e-03

Joint ci ratio: 1.194197e-01	ci left: 1.313937e-03	ci right 1.482058e-03	k: 1075	n:770000
Cons ci ratio: 1.188131e-01	ci left: 1.327798e-03	ci right 1.496768e-03	k: 1086	n:770000
KS ci ratio: 1.681629e-02	ci left: 6.536363e-02	ci right 6.647340e-02	k: 50756	n:770000
ARID2   770000 perm   466 sec   (1652 perm/sec)   p_kst 6.591688e-02   p_cons 1.410390e-03   p_joint 1.396104e-03

Joint ci ratio: 1.188142e-01	ci left: 1.310774e-03	ci right 1.477580e-03	k: 1086	n:780000
Cons ci ratio: 1.182167e-01	ci left: 1.324459e-03	ci right 1.492099e-03	k: 1097	n:780000
KS ci ratio: 1.670575e-02	ci left: 6.538485e-02	ci right 6.648761e-02	k: 51429	n:780000
ARID2   780000 perm   475 sec   (1642 perm/sec)   p_kst 6.593462e-02   p_cons 1.406410e-03   p_joint 1.392308e-03

Joint ci ratio: 1.180027e-01	ci left: 1.312607e-03	ci right 1.478425e-03	k: 1101	n:790000
Cons ci ratio: 1.175231e-01	ci left: 1.323664e-03	ci right 1.490153e-03	k: 1110	n:790000
KS ci ratio: 1.661118e-02	ci left: 6.530341e-02	ci right 6.639851e-02	k: 52021	n:790000
ARID2   790000 perm   484 sec   (1633 perm/sec)   p_kst 6.584937e-02   p_cons 1.405063e-03   p_joint 1.393671e-03

Joint ci ratio: 1.176833e-01	ci left: 1.303478e-03	ci right 1.467667e-03	k: 1107	n:800000
Cons ci ratio: 1.169980e-01	ci left: 1.319252e-03	ci right 1.484393e-03	k: 1120	n:800000
KS ci ratio: 1.650393e-02	ci left: 6.532987e-02	ci right 6.641827e-02	k: 52698	n:800000
ARID2   800000 perm   494 sec   (1620 perm/sec)   p_kst 6.587250e-02   p_cons 1.400000e-03   p_joint 1.383750e-03

Joint ci ratio: 1.201528e-01	ci left: 1.233480e-03	ci right 1.392343e-03	k: 1062	n:810000
Cons ci ratio: 1.164284e-01	ci left: 1.316148e-03	ci right 1.480043e-03	k: 1131	n:810000
KS ci ratio: 1.640598e-02	ci left: 6.530159e-02	ci right 6.638300e-02	k: 53331	n:810000
ARID2   810000 perm   503 sec   (1611 perm/sec)   p_kst 6.584074e-02   p_cons 1.396296e-03   p_joint 1.311111e-03

Joint ci ratio: 1.195919e-01	ci left: 1.230267e-03	ci right 1.387924e-03	k: 1072	n:820000
Cons ci ratio: 1.160196e-01	ci left: 1.309570e-03	ci right 1.472034e-03	k: 1139	n:820000
KS ci ratio: 1.630538e-02	ci left: 6.530682e-02	ci right 6.638162e-02	k: 53991	n:820000
ARID2   820000 perm   513 sec   (1600 perm/sec)   p_kst 6.584268e-02   p_cons 1.389024e-03   p_joint 1.307317e-03

Joint ci ratio: 1.186553e-01	ci left: 1.235316e-03	ci right 1.392294e-03	k: 1089	n:830000
Cons ci ratio: 1.153137e-01	ci left: 1.310171e-03	ci right 1.471654e-03	k: 1153	n:830000
KS ci ratio: 1.620819e-02	ci left: 6.529993e-02	ci right 6.636816e-02	k: 54641	n:830000
ARID2   830000 perm   522 sec   (1591 perm/sec)   p_kst 6.583253e-02   p_cons 1.389157e-03   p_joint 1.312048e-03

Joint ci ratio: 1.179540e-01	ci left: 1.235628e-03	ci right 1.391653e-03	k: 1102	n:840000
Cons ci ratio: 1.148670e-01	ci left: 1.304980e-03	ci right 1.465157e-03	k: 1162	n:840000
KS ci ratio: 1.610914e-02	ci left: 6.532051e-02	ci right 6.638248e-02	k: 55314	n:840000
ARID2   840000 perm   531 sec   (1582 perm/sec)   p_kst 6.585000e-02   p_cons 1.383333e-03   p_joint 1.311905e-03

Joint ci ratio: 1.174760e-01	ci left: 1.231368e-03	ci right 1.386181e-03	k: 1111	n:850000
Cons ci ratio: 1.140847e-01	ci left: 1.307912e-03	ci right 1.467282e-03	k: 1178	n:850000
KS ci ratio: 1.601479e-02	ci left: 6.531836e-02	ci right 6.637402e-02	k: 55968	n:850000
ARID2   850000 perm   540 sec   (1573 perm/sec)   p_kst 6.584471e-02   p_cons 1.385882e-03   p_joint 1.307059e-03

Joint ci ratio: 1.167953e-01	ci left: 1.231723e-03	ci right 1.385621e-03	k: 1124	n:860000
Cons ci ratio: 1.136042e-01	ci left: 1.304000e-03	ci right 1.462180e-03	k: 1188	n:860000
KS ci ratio: 1.592494e-02	ci left: 6.529426e-02	ci right 6.634355e-02	k: 56603	n:860000
ARID2   860000 perm   550 sec   (1565 perm/sec)   p_kst 6.581744e-02   p_cons 1.381395e-03   p_joint 1.306977e-03

Joint ci ratio: 1.207282e-01	ci left: 1.137261e-03	ci right 1.284483e-03	k: 1052	n:870000
Cons ci ratio: 1.126602e-01	ci left: 1.311350e-03	ci right 1.469011e-03	k: 1208	n:870000
KS ci ratio: 1.584163e-02	ci left: 6.523179e-02	ci right 6.627455e-02	k: 57204	n:870000
ARID2   870000 perm   561 sec   (1552 perm/sec)   p_kst 6.575172e-02   p_cons 1.388506e-03   p_joint 1.209195e-03

Joint ci ratio: 1.214237e-01	ci left: 1.111113e-03	ci right 1.255839e-03	k: 1040	n:880000
Cons ci ratio: 1.119677e-01	ci left: 1.313015e-03	ci right 1.469842e-03	k: 1223	n:880000
KS ci ratio: 1.575304e-02	ci left: 6.522171e-02	ci right 6.625842e-02	k: 57850	n:880000
ARID2   880000 perm   572 sec   (1539 perm/sec)   p_kst 6.573864e-02   p_cons 1.389773e-03   p_joint 1.181818e-03

Joint ci ratio: 1.210757e-01	ci left: 1.105166e-03	ci right 1.248674e-03	k: 1046	n:890000
Cons ci ratio: 1.109298e-01	ci left: 1.323385e-03	ci right 1.479889e-03	k: 1246	n:890000
KS ci ratio: 1.566764e-02	ci left: 6.519844e-02	ci right 6.622911e-02	k: 58484	n:890000
ARID2   890000 perm   582 sec   (1530 perm/sec)   p_kst 6.571236e-02   p_cons 1.400000e-03   p_joint 1.175281e-03

Joint ci ratio: 1.203309e-01	ci left: 1.106894e-03	ci right 1.249681e-03	k: 1059	n:900000
Cons ci ratio: 1.101375e-01	ci left: 1.328128e-03	ci right 1.483999e-03	k: 1264	n:900000
KS ci ratio: 1.558150e-02	ci left: 6.519230e-02	ci right 6.621716e-02	k: 59133	n:900000
ARID2   900000 perm   593 sec   (1518 perm/sec)   p_kst 6.570333e-02   p_cons 1.404444e-03   p_joint 1.176667e-03

Joint ci ratio: 1.207314e-01	ci left: 1.087270e-03	ci right 1.228024e-03	k: 1052	n:910000
Cons ci ratio: 1.098344e-01	ci left: 1.321013e-03	ci right 1.475595e-03	k: 1271	n:910000
KS ci ratio: 1.549441e-02	ci left: 6.520493e-02	ci right 6.622421e-02	k: 59799	n:910000
ARID2   910000 perm   603 sec   (1509 perm/sec)   p_kst 6.571319e-02   p_cons 1.396703e-03   p_joint 1.156044e-03

Joint ci ratio: 1.207896e-01	ci left: 1.074397e-03	ci right 1.213557e-03	k: 1051	n:920000
Cons ci ratio: 1.092775e-01	ci left: 1.320398e-03	ci right 1.474074e-03	k: 1284	n:920000
KS ci ratio: 1.540522e-02	ci left: 6.524546e-02	ci right 6.625945e-02	k: 60491	n:920000
ARID2   920000 perm   613 sec   (1501 perm/sec)   p_kst 6.575109e-02   p_cons 1.395652e-03   p_joint 1.142391e-03

Joint ci ratio: 1.201065e-01	ci left: 1.075359e-03	ci right 1.213800e-03	k: 1063	n:930000
Cons ci ratio: 1.087290e-01	ci left: 1.319797e-03	ci right 1.472583e-03	k: 1297	n:930000
KS ci ratio: 1.532037e-02	ci left: 6.526263e-02	ci right 6.627125e-02	k: 61162	n:930000
ARID2   930000 perm   623 sec   (1493 perm/sec)   p_kst 6.576559e-02   p_cons 1.394624e-03   p_joint 1.143011e-03

Joint ci ratio: 1.197136e-01	ci left: 1.071142e-03	ci right 1.208557e-03	k: 1070	n:940000
Cons ci ratio: 1.083542e-01	ci left: 1.315071e-03	ci right 1.466752e-03	k: 1306	n:940000
KS ci ratio: 1.523756e-02	ci left: 6.527416e-02	ci right 6.627746e-02	k: 61828	n:940000
ARID2   940000 perm   633 sec   (1485 perm/sec)   p_kst 6.577447e-02   p_cons 1.389362e-03   p_joint 1.138298e-03

Joint ci ratio: 1.189386e-01	ci left: 1.074164e-03	ci right 1.211012e-03	k: 1084	n:950000
Cons ci ratio: 1.077785e-01	ci left: 1.315567e-03	ci right 1.466447e-03	k: 1320	n:950000
KS ci ratio: 1.515803e-02	ci left: 6.526972e-02	ci right 6.626767e-02	k: 62479	n:950000
ARID2   950000 perm   643 sec   (1477 perm/sec)   p_kst 6.576737e-02   p_cons 1.389474e-03   p_joint 1.141053e-03

Joint ci ratio: 1.188297e-01	ci left: 1.064996e-03	ci right 1.200543e-03	k: 1086	n:960000
Cons ci ratio: 1.073327e-01	ci left: 1.313013e-03	ci right 1.462938e-03	k: 1331	n:960000
KS ci ratio: 1.507794e-02	ci left: 6.527992e-02	ci right 6.627270e-02	k: 63144	n:960000
ARID2   960000 perm   654 sec   (1468 perm/sec)   p_kst 6.577500e-02   p_cons 1.386458e-03   p_joint 1.131250e-03

Joint ci ratio: 1.180180e-01	ci left: 1.069022e-03	ci right 1.204088e-03	k: 1101	n:970000
Cons ci ratio: 1.066937e-01	ci left: 1.315530e-03	ci right 1.464792e-03	k: 1347	n:970000
KS ci ratio: 1.499935e-02	ci left: 6.528787e-02	ci right 6.627555e-02	k: 63807	n:970000
ARID2   970000 perm   665 sec   (1459 perm/sec)   p_kst 6.578041e-02   p_cons 1.388660e-03   p_joint 1.135052e-03

Joint ci ratio: 1.190506e-01	ci left: 1.039300e-03	ci right 1.171840e-03	k: 1082	n:980000
Cons ci ratio: 1.063789e-01	ci left: 1.310052e-03	ci right 1.458226e-03	k: 1355	n:980000
KS ci ratio: 1.492831e-02	ci left: 6.524381e-02	ci right 6.622611e-02	k: 64419	n:980000
ARID2   980000 perm   675 sec   (1451 perm/sec)   p_kst 6.573367e-02   p_cons 1.382653e-03   p_joint 1.104082e-03

Joint ci ratio: 1.207945e-01	ci left: 9.984271e-04	ci right 1.127753e-03	k: 1051	n:990000
Cons ci ratio: 1.059114e-01	ci left: 1.308618e-03	ci right 1.455940e-03	k: 1367	n:990000
KS ci ratio: 1.485289e-02	ci left: 6.524494e-02	ci right 6.622225e-02	k: 65075	n:990000
ARID2   990000 perm   686 sec   (1443 perm/sec)   p_kst 6.573232e-02   p_cons 1.380808e-03   p_joint 1.061616e-03

Joint ci ratio: 1.219021e-01	ci left: 9.700187e-04	ci right 1.096900e-03	k: 1032	n:1000000
Cons ci ratio: 1.053735e-01	ci left: 1.309162e-03	ci right 1.455750e-03	k: 1381	n:1000000
KS ci ratio: 1.477932e-02	ci left: 6.524008e-02	ci right 6.621244e-02	k: 65725	n:1000000
ARID2   1000000 perm   697 sec   (1435 perm/sec)   p_kst 6.572500e-02   p_cons 1.381000e-03   p_joint 1.032000e-03

Joint ci ratio: 1.214330e-01	ci left: 9.680942e-04	ci right 1.094201e-03	k: 1040	n:1010000
Cons ci ratio: 1.051080e-01	ci left: 1.302948e-03	ci right 1.448450e-03	k: 1388	n:1010000
KS ci ratio: 1.471193e-02	ci left: 6.519290e-02	ci right 6.616009e-02	k: 66332	n:1010000
ARID2   1010000 perm   708 sec   (1427 perm/sec)   p_kst 6.567525e-02   p_cons 1.374257e-03   p_joint 1.029703e-03

Joint ci ratio: 1.234073e-01	ci left: 9.272396e-04	ci right 1.050132e-03	k: 1007	n:1020000
Cons ci ratio: 1.045077e-01	ci left: 1.305450e-03	ci right 1.450347e-03	k: 1404	n:1020000
KS ci ratio: 1.463938e-02	ci left: 6.519746e-02	ci right 6.615991e-02	k: 66991	n:1020000
ARID2   1020000 perm   719 sec   (1420 perm/sec)   p_kst 6.567745e-02   p_cons 1.376471e-03   p_joint 9.872549e-04

Joint ci ratio: 1.061086e-01	ci left: 1.253071e-03	ci right 1.394418e-03	k: 1362	n:1030000
Cons ci ratio: 1.041748e-01	ci left: 1.301285e-03	ci right 1.445232e-03	k: 1413	n:1030000
KS ci ratio: 1.456869e-02	ci left: 6.519517e-02	ci right 6.615290e-02	k: 67643	n:1030000
ARID2   1030000 perm   731 sec   (1410 perm/sec)   p_kst 6.567282e-02   p_cons 1.371845e-03   p_joint 1.322330e-03

Joint ci ratio: 1.067384e-01	ci left: 1.226046e-03	ci right 1.365217e-03	k: 1346	n:1040000
Cons ci ratio: 1.035540e-01	ci left: 1.304694e-03	ci right 1.448106e-03	k: 1430	n:1040000
KS ci ratio: 1.449924e-02	ci left: 6.519102e-02	ci right 6.614409e-02	k: 68293	n:1040000
ARID2   1040000 perm   741 sec   (1403 perm/sec)   p_kst 6.566635e-02   p_cons 1.375000e-03   p_joint 1.294231e-03

Joint ci ratio: 1.077041e-01	ci left: 1.192124e-03	ci right 1.328746e-03	k: 1322	n:1050000
Cons ci ratio: 1.028021e-01	ci left: 1.311753e-03	ci right 1.454830e-03	k: 1451	n:1050000
KS ci ratio: 1.442742e-02	ci left: 6.521544e-02	ci right 6.616410e-02	k: 68973	n:1050000
ARID2   1050000 perm   752 sec   (1396 perm/sec)   p_kst 6.568857e-02   p_cons 1.381905e-03   p_joint 1.259048e-03

Joint ci ratio: 1.090330e-01	ci left: 1.151506e-03	ci right 1.285206e-03	k: 1290	n:1060000
Cons ci ratio: 1.023450e-01	ci left: 1.311327e-03	ci right 1.453684e-03	k: 1464	n:1060000
KS ci ratio: 1.436339e-02	ci left: 6.518205e-02	ci right 6.612598e-02	k: 69592	n:1060000
ARID2   1060000 perm   763 sec   (1389 perm/sec)   p_kst 6.565283e-02   p_cons 1.381132e-03   p_joint 1.216981e-03

Joint ci ratio: 1.095446e-01	ci left: 1.129835e-03	ci right 1.261674e-03	k: 1278	n:1070000
Cons ci ratio: 1.018250e-01	ci left: 1.312733e-03	ci right 1.454474e-03	k: 1479	n:1070000
KS ci ratio: 1.429824e-02	ci left: 6.516606e-02	ci right 6.610545e-02	k: 70229	n:1070000
ARID2   1070000 perm   775 sec   (1381 perm/sec)   p_kst 6.563458e-02   p_cons 1.382243e-03   p_joint 1.194393e-03

Joint ci ratio: 1.133818e-01	ci left: 1.042861e-03	ci right 1.169099e-03	k: 1193	n:1080000
Cons ci ratio: 1.014488e-01	ci left: 1.310504e-03	ci right 1.451451e-03	k: 1490	n:1080000
KS ci ratio: 1.423430e-02	ci left: 6.514761e-02	ci right 6.608250e-02	k: 70863	n:1080000
ARID2   1080000 perm   787 sec   (1372 perm/sec)   p_kst 6.561389e-02   p_cons 1.379630e-03   p_joint 1.104630e-03

Joint ci ratio: 1.127695e-01	ci left: 1.044883e-03	ci right 1.170637e-03	k: 1206	n:1090000
Cons ci ratio: 1.009423e-01	ci left: 1.311894e-03	ci right 1.452245e-03	k: 1505	n:1090000
KS ci ratio: 1.417216e-02	ci left: 6.512128e-02	ci right 6.605167e-02	k: 71488	n:1090000
ARID2   1090000 perm   799 sec   (1364 perm/sec)   p_kst 6.558532e-02   p_cons 1.380734e-03   p_joint 1.106422e-03

Joint ci ratio: 1.123978e-01	ci left: 1.042451e-03	ci right 1.167472e-03	k: 1214	n:1100000
Cons ci ratio: 1.005095e-01	ci left: 1.311488e-03	ci right 1.451158e-03	k: 1518	n:1100000
KS ci ratio: 1.410757e-02	ci left: 6.512352e-02	ci right 6.604967e-02	k: 72144	n:1100000
ARID2   1100000 perm   810 sec   (1358 perm/sec)   p_kst 6.558545e-02   p_cons 1.380000e-03   p_joint 1.103636e-03

Joint ci ratio: 1.117556e-01	ci left: 1.045319e-03	ci right 1.169920e-03	k: 1228	n:1110000
Cons ci ratio: 1.002132e-01	ci left: 1.307578e-03	ci right 1.446397e-03	k: 1527	n:1110000
KS ci ratio: 1.404604e-02	ci left: 6.510688e-02	ci right 6.602872e-02	k: 72779	n:1110000
ARID2   1110000 perm   821 sec   (1351 perm/sec)   p_kst 6.556667e-02   p_cons 1.375676e-03   p_joint 1.106306e-03

Joint ci ratio: 1.112139e-01	ci left: 1.046401e-03	ci right 1.170487e-03	k: 1240	n:1120000
Cons ci ratio: 9.988708e-02	ci left: 1.304608e-03	ci right 1.442634e-03	k: 1537	n:1120000
KS ci ratio: 1.398489e-02	ci left: 6.509410e-02	ci right 6.601172e-02	k: 73418	n:1120000
ARID2   1120000 perm   833 sec   (1345 perm/sec)   p_kst 6.555179e-02   p_cons 1.372321e-03   p_joint 1.107143e-03

Joint ci ratio: 1.105917e-01	ci left: 1.049187e-03	ci right 1.172862e-03	k: 1254	n:1130000
Cons ci ratio: 9.946762e-02	ci left: 1.304280e-03	ci right 1.441659e-03	k: 1550	n:1130000
KS ci ratio: 1.392152e-02	ci left: 6.510802e-02	ci right 6.602164e-02	k: 74087	n:1130000
ARID2   1130000 perm   845 sec   (1337 perm/sec)   p_kst 6.556372e-02   p_cons 1.371681e-03   p_joint 1.109735e-03

Joint ci ratio: 1.117118e-01	ci left: 1.018663e-03	ci right 1.140036e-03	k: 1229	n:1140000
Cons ci ratio: 9.899004e-02	ci left: 1.305671e-03	ci right 1.442497e-03	k: 1565	n:1140000
KS ci ratio: 1.386019e-02	ci left: 6.511121e-02	ci right 6.602082e-02	k: 74744	n:1140000
ARID2   1140000 perm   857 sec   (1331 perm/sec)   p_kst 6.556491e-02   p_cons 1.372807e-03   p_joint 1.078070e-03

Joint ci ratio: 1.112156e-01	ci left: 1.019103e-03	ci right 1.139954e-03	k: 1240	n:1150000
Cons ci ratio: 9.864431e-02	ci left: 1.303646e-03	ci right 1.439755e-03	k: 1576	n:1150000
KS ci ratio: 1.379898e-02	ci left: 6.512042e-02	ci right 6.602611e-02	k: 75408	n:1150000
ARID2   1150000 perm   869 sec   (1324 perm/sec)   p_kst 6.557217e-02   p_cons 1.370435e-03   p_joint 1.078261e-03

Joint ci ratio: 1.092083e-01	ci left: 1.048881e-03	ci right 1.170874e-03	k: 1286	n:1160000
Cons ci ratio: 9.514446e-02	ci left: 1.391670e-03	ci right 1.531528e-03	k: 1694	n:1160000
KS ci ratio: 1.373481e-02	ci left: 6.516300e-02	ci right 6.606503e-02	k: 76111	n:1160000
ARID2   1160000 perm   880 sec   (1317 perm/sec)   p_kst 6.561293e-02   p_cons 1.460345e-03   p_joint 1.108621e-03

Joint ci ratio: 1.089127e-01	ci left: 1.045736e-03	ci right 1.167012e-03	k: 1293	n:1170000
Cons ci ratio: 9.475397e-02	ci left: 1.391457e-03	ci right 1.530688e-03	k: 1708	n:1170000
KS ci ratio: 1.367705e-02	ci left: 6.515544e-02	ci right 6.605355e-02	k: 76756	n:1170000
ARID2   1170000 perm   892 sec   (1311 perm/sec)   p_kst 6.560342e-02   p_cons 1.459829e-03   p_joint 1.105128e-03

Joint ci ratio: 1.092944e-01	ci left: 1.029454e-03	ci right 1.149288e-03	k: 1284	n:1180000
Cons ci ratio: 9.398663e-02	ci left: 1.402834e-03	ci right 1.542004e-03	k: 1736	n:1180000
KS ci ratio: 1.362246e-02	ci left: 6.512606e-02	ci right 6.602015e-02	k: 77375	n:1180000
ARID2   1180000 perm   904 sec   (1305 perm/sec)   p_kst 6.557203e-02   p_cons 1.471186e-03   p_joint 1.088136e-03

Joint ci ratio: 1.087456e-01	ci left: 1.031430e-03	ci right 1.150852e-03	k: 1297	n:1190000
Cons ci ratio: 9.355668e-02	ci left: 1.404176e-03	ci right 1.542806e-03	k: 1752	n:1190000
KS ci ratio: 1.356303e-02	ci left: 6.514659e-02	ci right 6.603703e-02	k: 78053	n:1190000
ARID2   1190000 perm   918 sec   (1296 perm/sec)   p_kst 6.559076e-02   p_cons 1.472269e-03   p_joint 1.089916e-03

Joint ci ratio: 1.085787e-01	ci left: 1.026077e-03	ci right 1.144685e-03	k: 1301	n:1200000
Cons ci ratio: 9.305359e-02	ci left: 1.407939e-03	ci right 1.546152e-03	k: 1771	n:1200000
KS ci ratio: 1.350520e-02	ci left: 6.515932e-02	ci right 6.604611e-02	k: 78722	n:1200000
ARID2   1200000 perm   931 sec   (1289 perm/sec)   p_kst 6.560167e-02   p_cons 1.475833e-03   p_joint 1.084167e-03

Joint ci ratio: 1.079584e-01	ci left: 1.029658e-03	ci right 1.147957e-03	k: 1316	n:1210000
Cons ci ratio: 9.255853e-02	ci left: 1.411641e-03	ci right 1.549441e-03	k: 1790	n:1210000
KS ci ratio: 1.344647e-02	ci left: 6.518668e-02	ci right 6.606995e-02	k: 79409	n:1210000
ARID2   1210000 perm   943 sec   (1283 perm/sec)   p_kst 6.562727e-02   p_cons 1.479339e-03   p_joint 1.087603e-03

Joint ci ratio: 1.076728e-01	ci left: 1.026801e-03	ci right 1.144440e-03	k: 1323	n:1220000
Cons ci ratio: 9.235276e-02	ci left: 1.406476e-03	ci right 1.543450e-03	k: 1798	n:1220000
KS ci ratio: 1.339172e-02	ci left: 6.518418e-02	ci right 6.606379e-02	k: 80060	n:1220000
ARID2   1220000 perm   955 sec   (1277 perm/sec)   p_kst 6.562295e-02   p_cons 1.473770e-03   p_joint 1.084426e-03

Joint ci ratio: 1.071881e-01	ci left: 1.027947e-03	ci right 1.145154e-03	k: 1335	n:1230000
Cons ci ratio: 9.191939e-02	ci left: 1.408544e-03	ci right 1.545041e-03	k: 1815	n:1230000
KS ci ratio: 1.333869e-02	ci left: 6.517200e-02	ci right 6.604794e-02	k: 80699	n:1230000
ARID2   1230000 perm   968 sec   (1270 perm/sec)   p_kst 6.560894e-02   p_cons 1.475610e-03   p_joint 1.085366e-03

Joint ci ratio: 1.081656e-01	ci left: 1.000823e-03	ci right 1.116044e-03	k: 1311	n:1240000
Cons ci ratio: 9.166752e-02	ci left: 1.405064e-03	ci right 1.540830e-03	k: 1825	n:1240000
KS ci ratio: 1.328463e-02	ci left: 6.517529e-02	ci right 6.604770e-02	k: 81357	n:1240000
ARID2   1240000 perm   981 sec   (1264 perm/sec)   p_kst 6.561048e-02   p_cons 1.471774e-03   p_joint 1.057258e-03

Joint ci ratio: 9.909111e-02	ci left: 1.188427e-03	ci right 1.313102e-03	k: 1562	n:1250000
Cons ci ratio: 9.129331e-02	ci left: 1.405549e-03	ci right 1.540778e-03	k: 1840	n:1250000
KS ci ratio: 1.323028e-02	ci left: 6.518732e-02	ci right 6.605629e-02	k: 82026	n:1250000
ARID2   1250000 perm   993 sec   (1258 perm/sec)   p_kst 6.562080e-02   p_cons 1.472000e-03   p_joint 1.249600e-03

Outputting figure to mutsig2_images.part000000000010/ARID2.19_5592_1250000_0.065621_0.001472_0.0012496.png
                gene_name: ARID2
               theta_stop: 0.099 
                    nperm: 1250000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.0015 
      ci_cons_bounds_left: 0.0014 
     ci_cons_bounds_right: 0.0015 
                  p_joint: 0.0012 
     ci_joint_bounds_left: 0.0012 
    ci_joint_bounds_right: 0.0013 

Current progress: 3 percent done.
ARAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.069109e-01	ci left: 1.121295e-01	ci right 1.248936e-01	k: 1184	n:10000
Cons ci ratio: 2.719853e-02	ci left: 6.657201e-01	ci right 6.841779e-01	k: 6750	n:10000
KS ci ratio: 1.298648e-01	ci left: 7.805288e-02	ci right 8.899118e-02	k: 834	n:10000
ARAP2   10000 perm   3 sec   (3943 perm/sec)   p_kst 8.340000e-02   p_cons 6.750000e-01   p_joint 1.184000e-01

Joint ci ratio: 6.452131e-02	ci left: 1.507498e-01	ci right 1.608505e-01	k: 3115	n:20000
Cons ci ratio: 1.871990e-02	ci left: 6.802702e-01	ci right 6.931755e-01	k: 13735	n:20000
KS ci ratio: 9.027595e-02	ci left: 8.224775e-02	ci right 9.007306e-02	k: 1722	n:20000
ARAP2   20000 perm   5 sec   (3645 perm/sec)   p_kst 8.610000e-02   p_cons 6.867500e-01   p_joint 1.557500e-01

Outputting figure to mutsig2_images.part000000000010/ARAP2.18_5243_20000_0.0861_0.68675_0.15575.png
                gene_name: ARAP2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 4 percent done.
ARHGAP20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.714643e-02	ci left: 1.972229e-01	ci right 2.131492e-01	k: 2051	n:10000
Cons ci ratio: 3.411962e-02	ci left: 5.591248e-01	ci right 5.786351e-01	k: 5689	n:10000
KS ci ratio: 1.131226e-01	ci left: 1.011041e-01	ci right 1.133258e-01	k: 1071	n:10000
ARHGAP20   10000 perm   2 sec   (4303 perm/sec)   p_kst 1.071000e-01   p_cons 5.689000e-01   p_joint 2.051000e-01

Joint ci ratio: 5.061635e-02	ci left: 2.248264e-01	ci right 2.365520e-01	k: 4613	n:20000
Cons ci ratio: 2.425087e-02	ci left: 5.594976e-01	ci right 5.732831e-01	k: 11328	n:20000
KS ci ratio: 7.744556e-02	ci left: 1.091353e-01	ci right 1.179774e-01	k: 2270	n:20000
ARHGAP20   20000 perm   5 sec   (3936 perm/sec)   p_kst 1.135000e-01   p_cons 5.664000e-01   p_joint 2.306500e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP20.16_3636_20000_0.1135_0.5664_0.23065.png
                gene_name: ARHGAP20
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 6 percent done.
ARFGEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.890169e-02	ci left: 6.383461e-01	ci right 6.571677e-01	k: 6478	n:10000
Cons ci ratio: 5.529198e-02	ci left: 3.251526e-01	ci right 3.437439e-01	k: 3344	n:10000
KS ci ratio: 3.745367e-02	ci left: 5.128549e-01	ci right 5.325319e-01	k: 5227	n:10000
ARFGEF1   10000 perm   3 sec   (3907 perm/sec)   p_kst 5.227000e-01   p_cons 3.344000e-01   p_joint 6.478000e-01

Outputting figure to mutsig2_images.part000000000010/ARFGEF1.15_5706_10000_0.5227_0.3344_0.6478.png
                gene_name: ARFGEF1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 7 percent done.
AQPEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.693422e-02	ci left: 1.981098e-01	ci right 2.140618e-01	k: 2060	n:10000
Cons ci ratio: 8.597494e-02	ci left: 1.646498e-01	ci right 1.795417e-01	k: 1720	n:10000
KS ci ratio: 6.385595e-02	ci left: 2.648793e-01	ci right 2.824527e-01	k: 2736	n:10000
AQPEP   10000 perm   2 sec   (4123 perm/sec)   p_kst 2.736000e-01   p_cons 1.720000e-01   p_joint 2.060000e-01

Outputting figure to mutsig2_images.part000000000010/AQPEP.13_3053_10000_0.2736_0.172_0.206.png
                gene_name: AQPEP
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 9 percent done.
ARHGAP21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.125218e-01	ci left: 2.939568e-02	ci right 3.647982e-02	k: 328	n:10000
Cons ci ratio: 1.629514e-01	ci left: 5.022725e-02	ci right 5.923435e-02	k: 546	n:10000
KS ci ratio: 1.680497e-01	ci left: 4.724933e-02	ci right 5.601420e-02	k: 515	n:10000
ARHGAP21   10000 perm   3 sec   (3779 perm/sec)   p_kst 5.150000e-02   p_cons 5.460000e-02   p_joint 3.280000e-02

Joint ci ratio: 1.319696e-01	ci left: 3.945544e-02	ci right 4.507862e-02	k: 844	n:20000
Cons ci ratio: 1.117051e-01	ci left: 5.475129e-02	ci right 6.127794e-02	k: 1159	n:20000
KS ci ratio: 1.211389e-01	ci left: 4.672873e-02	ci right 5.280302e-02	k: 994	n:20000
ARHGAP21   20000 perm   6 sec   (3443 perm/sec)   p_kst 4.970000e-02   p_cons 5.795000e-02   p_joint 4.220000e-02

Joint ci ratio: 1.192486e-01	ci left: 3.268985e-02	ci right 3.686754e-02	k: 1042	n:30000
Cons ci ratio: 9.289111e-02	ci left: 5.342467e-02	ci right 5.866173e-02	k: 1680	n:30000
KS ci ratio: 9.868433e-02	ci left: 4.749567e-02	ci right 5.245861e-02	k: 1498	n:30000
ARHGAP21   30000 perm   9 sec   (3356 perm/sec)   p_kst 4.993333e-02   p_cons 5.600000e-02   p_joint 3.473333e-02

Joint ci ratio: 1.345617e-01	ci left: 1.937545e-02	ci right 2.219473e-02	k: 830	n:40000
Cons ci ratio: 8.016886e-02	ci left: 5.413449e-02	ci right 5.868017e-02	k: 2255	n:40000
KS ci ratio: 8.577258e-02	ci left: 4.749255e-02	ci right 5.177313e-02	k: 1984	n:40000
ARHGAP21   40000 perm   12 sec   (3298 perm/sec)   p_kst 4.960000e-02   p_cons 5.637500e-02   p_joint 2.075000e-02

Joint ci ratio: 9.419107e-02	ci left: 3.190084e-02	ci right 3.507362e-02	k: 1673	n:50000
Cons ci ratio: 7.169190e-02	ci left: 5.439373e-02	ci right 5.845797e-02	k: 2820	n:50000
KS ci ratio: 7.639810e-02	ci left: 4.810583e-02	ci right 5.194662e-02	k: 2500	n:50000
ARHGAP21   50000 perm   16 sec   (3225 perm/sec)   p_kst 5.000000e-02   p_cons 5.640000e-02   p_joint 3.346000e-02

Outputting figure to mutsig2_images.part000000000010/ARHGAP21.13_5977_50000_0.05_0.0564_0.03346.png
                gene_name: ARHGAP21
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.035 

Current progress: 10 percent done.
ARHGEF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.395993e-02	ci left: 5.614305e-01	ci right 5.809280e-01	k: 5712	n:10000
Cons ci ratio: 3.802803e-02	ci left: 5.052515e-01	ci right 5.249398e-01	k: 5151	n:10000
KS ci ratio: 3.977048e-02	ci left: 4.828546e-01	ci right 5.025497e-01	k: 4927	n:10000
ARHGEF11   10000 perm   2 sec   (4053 perm/sec)   p_kst 4.927000e-01   p_cons 5.151000e-01   p_joint 5.712000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF11.11_4853_10000_0.4927_0.5151_0.5712.png
                gene_name: ARHGEF11
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 12 percent done.
ARID1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.225082e-01	ci left: 2.674401e-02	ci right 3.353336e-02	k: 300	n:10000
Cons ci ratio: 2.521293e-01	ci left: 2.062036e-02	ci right 2.666153e-02	k: 235	n:10000
KS ci ratio: 7.949257e-02	ci left: 1.877666e-01	ci right 2.034111e-01	k: 1955	n:10000
ARID1B   10000 perm   3 sec   (3684 perm/sec)   p_kst 1.955000e-01   p_cons 2.350000e-02   p_joint 3.000000e-02

Joint ci ratio: 1.418062e-01	ci left: 3.418499e-02	ci right 3.945078e-02	k: 735	n:20000
Cons ci ratio: 1.760084e-01	ci left: 2.206683e-02	ci right 2.637302e-02	k: 483	n:20000
KS ci ratio: 5.796656e-02	ci left: 1.806777e-01	ci right 1.915137e-01	k: 3721	n:20000
ARID1B   20000 perm   6 sec   (3164 perm/sec)   p_kst 1.860500e-01   p_cons 2.415000e-02   p_joint 3.675000e-02

Joint ci ratio: 1.199654e-01	ci left: 3.230143e-02	ci right 3.645605e-02	k: 1030	n:30000
Cons ci ratio: 1.529216e-01	ci left: 1.979225e-02	ci right 2.310134e-02	k: 642	n:30000
KS ci ratio: 4.538210e-02	ci left: 1.946270e-01	ci right 2.036980e-01	k: 5974	n:30000
ARID1B   30000 perm   10 sec   (3093 perm/sec)   p_kst 1.991333e-01   p_cons 2.140000e-02   p_joint 3.433333e-02

Joint ci ratio: 8.407059e-02	ci left: 4.937871e-02	ci right 5.373668e-02	k: 2061	n:40000
Cons ci ratio: 1.297037e-01	ci left: 2.087524e-02	ci right 2.379468e-02	k: 892	n:40000
KS ci ratio: 3.919669e-02	ci left: 1.960895e-01	ci right 2.039541e-01	k: 8000	n:40000
ARID1B   40000 perm   13 sec   (3088 perm/sec)   p_kst 2.000000e-01   p_cons 2.230000e-02   p_joint 5.152500e-02

Joint ci ratio: 7.576247e-02	ci left: 4.889138e-02	ci right 5.276099e-02	k: 2540	n:50000
Cons ci ratio: 1.153911e-01	ci left: 2.125674e-02	ci right 2.387910e-02	k: 1127	n:50000
KS ci ratio: 3.507672e-02	ci left: 1.963425e-01	ci right 2.033724e-01	k: 9992	n:50000
ARID1B   50000 perm   16 sec   (3078 perm/sec)   p_kst 1.998400e-01   p_cons 2.254000e-02   p_joint 5.080000e-02

Joint ci ratio: 7.829751e-02	ci left: 3.852774e-02	ci right 4.168360e-02	k: 2405	n:60000
Cons ci ratio: 1.061668e-01	ci left: 2.103593e-02	ci right 2.341060e-02	k: 1332	n:60000
KS ci ratio: 3.194332e-02	ci left: 1.974186e-01	ci right 2.038437e-01	k: 12037	n:60000
ARID1B   60000 perm   20 sec   (3050 perm/sec)   p_kst 2.006167e-01   p_cons 2.220000e-02   p_joint 4.008333e-02

Joint ci ratio: 7.339304e-02	ci left: 3.771818e-02	ci right 4.060589e-02	k: 2740	n:70000
Cons ci ratio: 9.858907e-02	ci left: 2.099578e-02	ci right 2.318694e-02	k: 1545	n:70000
KS ci ratio: 2.952821e-02	ci left: 1.981502e-01	ci right 2.041031e-01	k: 14078	n:70000
ARID1B   70000 perm   24 sec   (2970 perm/sec)   p_kst 2.011143e-01   p_cons 2.207143e-02   p_joint 3.914286e-02

Outputting figure to mutsig2_images.part000000000010/ARID1B.11_6830_70000_0.20111_0.022071_0.039143.png
                gene_name: ARID1B
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.041 

Current progress: 13 percent done.
ARHGEF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.689629e-02	ci left: 2.469740e-01	ci right 2.641687e-01	k: 2555	n:10000
Cons ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
KS ci ratio: 1.462208e-02	ci left: 8.713228e-01	ci right 8.842562e-01	k: 8779	n:10000
ARHGEF6   10000 perm   2 sec   (4778 perm/sec)   p_kst 8.779000e-01   p_cons 7.270000e-02   p_joint 2.555000e-01

Joint ci ratio: 4.728455e-02	ci left: 2.496648e-01	ci right 2.618063e-01	k: 5114	n:20000
Cons ci ratio: 9.727235e-02	ci left: 7.143550e-02	ci right 7.878860e-02	k: 1501	n:20000
KS ci ratio: 1.092549e-02	ci left: 8.607440e-01	ci right 8.702494e-01	k: 17311	n:20000
ARHGEF6   20000 perm   5 sec   (4297 perm/sec)   p_kst 8.655500e-01   p_cons 7.505000e-02   p_joint 2.557000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF6.10_2419_20000_0.86555_0.07505_0.2557.png
                gene_name: ARHGEF6
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 15 percent done.
ARHGAP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.194552e-02	ci left: 1.466828e-01	ci right 1.609195e-01	k: 1537	n:10000
Cons ci ratio: 7.721745e-02	ci left: 1.969273e-01	ci right 2.128450e-01	k: 2048	n:10000
KS ci ratio: 7.582348e-02	ci left: 2.028409e-01	ci right 2.189279e-01	k: 2108	n:10000
ARHGAP12   10000 perm   2 sec   (4699 perm/sec)   p_kst 2.108000e-01   p_cons 2.048000e-01   p_joint 1.537000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP12.9_2613_10000_0.2108_0.2048_0.1537.png
                gene_name: ARHGAP12
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 16 percent done.
ARHGAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.422220e-01	ci left: 6.555836e-02	ci right 7.569349e-02	k: 705	n:10000
Cons ci ratio: 2.204041e-02	ci left: 7.513020e-01	ci right 7.681465e-01	k: 7598	n:10000
KS ci ratio: 2.339773e-01	ci left: 2.410011e-02	ci right 3.057918e-02	k: 272	n:10000
ARHGAP5   10000 perm   2 sec   (4206 perm/sec)   p_kst 2.720000e-02   p_cons 7.598000e-01   p_joint 7.050000e-02

Joint ci ratio: 1.117051e-01	ci left: 5.475129e-02	ci right 6.127794e-02	k: 1159	n:20000
Cons ci ratio: 1.572584e-02	ci left: 7.504898e-01	ci right 7.624356e-01	k: 15130	n:20000
KS ci ratio: 1.713490e-01	ci left: 2.331158e-02	ci right 2.772784e-02	k: 509	n:20000
ARHGAP5   20000 perm   5 sec   (3759 perm/sec)   p_kst 2.545000e-02   p_cons 7.565000e-01   p_joint 5.795000e-02

Joint ci ratio: 9.725848e-02	ci left: 4.886307e-02	ci right 5.389093e-02	k: 1540	n:30000
Cons ci ratio: 1.288077e-02	ci left: 7.504275e-01	ci right 7.601897e-01	k: 22660	n:30000
KS ci ratio: 1.395331e-01	ci left: 2.384218e-02	ci right 2.745048e-02	k: 768	n:30000
ARHGAP5   30000 perm   8 sec   (3620 perm/sec)   p_kst 2.560000e-02   p_cons 7.553333e-01   p_joint 5.133333e-02

Joint ci ratio: 7.584495e-02	ci left: 6.022083e-02	ci right 6.499291e-02	k: 2503	n:40000
Cons ci ratio: 1.114628e-02	ci left: 7.513829e-01	ci right 7.598300e-01	k: 30225	n:40000
KS ci ratio: 1.225892e-01	ci left: 2.339505e-02	ci right 2.647444e-02	k: 996	n:40000
ARHGAP5   40000 perm   11 sec   (3549 perm/sec)   p_kst 2.490000e-02   p_cons 7.556250e-01   p_joint 6.257500e-02

Joint ci ratio: 7.372162e-02	ci left: 5.154354e-02	ci right 5.550850e-02	k: 2675	n:50000
Cons ci ratio: 9.956722e-03	ci left: 7.523111e-01	ci right 7.598591e-01	k: 37805	n:50000
KS ci ratio: 1.082416e-01	ci left: 2.417481e-02	ci right 2.696064e-02	k: 1277	n:50000
ARHGAP5   50000 perm   14 sec   (3488 perm/sec)   p_kst 2.554000e-02   p_cons 7.561000e-01   p_joint 5.350000e-02

Joint ci ratio: 6.658074e-02	ci left: 5.279532e-02	ci right 5.644791e-02	k: 3276	n:60000
Cons ci ratio: 9.097419e-03	ci left: 7.523083e-01	ci right 7.592003e-01	k: 45346	n:60000
KS ci ratio: 9.811050e-02	ci left: 2.464370e-02	ci right 2.720243e-02	k: 1554	n:60000
ARHGAP5   60000 perm   17 sec   (3436 perm/sec)   p_kst 2.590000e-02   p_cons 7.557667e-01   p_joint 5.460000e-02

Outputting figure to mutsig2_images.part000000000010/ARHGAP5.9_4533_60000_0.0259_0.75577_0.0546.png
                gene_name: ARHGAP5
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.056 

Current progress: 18 percent done.
ARHGEF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.331969e-02	ci left: 7.298693e-01	ci right 7.471916e-01	k: 7386	n:10000
Cons ci ratio: 4.830206e-02	ci left: 3.873915e-01	ci right 4.066685e-01	k: 3970	n:10000
KS ci ratio: 1.737018e-02	ci left: 8.284934e-01	ci right 8.431104e-01	k: 8359	n:10000
ARHGEF10   10000 perm   2 sec   (4501 perm/sec)   p_kst 8.359000e-01   p_cons 3.970000e-01   p_joint 7.386000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF10.9_4147_10000_0.8359_0.397_0.7386.png
                gene_name: ARHGEF10
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 19 percent done.
ARHGEF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
ARHGEF12   10000 perm   2 sec   (4095 perm/sec)   p_kst 6.680000e-02   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.552752e-01	ci left: 4.977027e-03	ci right 7.170311e-03	k: 120	n:20000
Cons ci ratio: 1.752814e+00	ci left: 5.449587e-05	ci right 5.119995e-04	k: 4	n:20000
KS ci ratio: 1.031460e-01	ci left: 6.386583e-02	ci right 7.086059e-02	k: 1346	n:20000
ARHGEF12   20000 perm   5 sec   (3866 perm/sec)   p_kst 6.730000e-02   p_cons 2.000000e-04   p_joint 6.000000e-03

Joint ci ratio: 3.933177e-01	ci left: 2.652810e-03	ci right 3.979598e-03	k: 98	n:30000
Cons ci ratio: 1.481423e+00	ci left: 7.339990e-05	ci right 4.352646e-04	k: 6	n:30000
KS ci ratio: 8.317542e-02	ci left: 6.605905e-02	ci right 7.182476e-02	k: 2067	n:30000
ARHGEF12   30000 perm   8 sec   (3758 perm/sec)   p_kst 6.890000e-02   p_cons 2.000000e-04   p_joint 3.266667e-03

Joint ci ratio: 3.216214e-01	ci left: 3.105786e-03	ci right 4.318021e-03	k: 147	n:40000
Cons ci ratio: 1.239442e+00	ci left: 1.028893e-04	ci right 4.270769e-04	k: 9	n:40000
KS ci ratio: 7.227658e-02	ci left: 6.601886e-02	ci right 7.099401e-02	k: 2739	n:40000
ARHGEF12   40000 perm   11 sec   (3644 perm/sec)   p_kst 6.847500e-02   p_cons 2.250000e-04   p_joint 3.675000e-03

Joint ci ratio: 3.261927e-01	ci left: 2.410984e-03	ci right 3.368181e-03	k: 143	n:50000
Cons ci ratio: 1.181783e+00	ci left: 9.591181e-05	ci right 3.677763e-04	k: 10	n:50000
KS ci ratio: 6.491116e-02	ci left: 6.576912e-02	ci right 7.020120e-02	k: 3398	n:50000
ARHGEF12   50000 perm   14 sec   (3571 perm/sec)   p_kst 6.796000e-02   p_cons 2.000000e-04   p_joint 2.860000e-03

Joint ci ratio: 3.516595e-01	ci left: 1.704031e-03	ci right 2.445456e-03	k: 123	n:60000
Cons ci ratio: 1.181806e+00	ci left: 7.992595e-05	ci right 3.064845e-04	k: 10	n:60000
KS ci ratio: 5.930866e-02	ci left: 6.585031e-02	ci right 6.989161e-02	k: 4071	n:60000
ARHGEF12   60000 perm   17 sec   (3459 perm/sec)   p_kst 6.785000e-02   p_cons 1.666667e-04   p_joint 2.050000e-03

Joint ci ratio: 3.545882e-01	ci left: 1.434524e-03	ci right 2.065074e-03	k: 121	n:70000
Cons ci ratio: 1.181823e+00	ci left: 6.850761e-05	ci right 2.627036e-04	k: 10	n:70000
KS ci ratio: 5.502527e-02	ci left: 6.573687e-02	ci right 6.947049e-02	k: 4731	n:70000
ARHGEF12   70000 perm   21 sec   (3386 perm/sec)   p_kst 6.758571e-02   p_cons 1.428571e-04   p_joint 1.728571e-03

Joint ci ratio: 3.787048e-01	ci left: 1.084925e-03	ci right 1.602327e-03	k: 106	n:80000
Cons ci ratio: 9.506327e-01	ci left: 1.143215e-04	ci right 3.247672e-04	k: 16	n:80000
KS ci ratio: 5.134937e-02	ci left: 6.615380e-02	ci right 6.965261e-02	k: 5431	n:80000
ARHGEF12   80000 perm   24 sec   (3348 perm/sec)   p_kst 6.788750e-02   p_cons 2.000000e-04   p_joint 1.325000e-03

Joint ci ratio: 4.019690e-01	ci left: 8.440973e-04	ci right 1.277986e-03	k: 94	n:90000
Cons ci ratio: 1.087128e+00	ci left: 6.889712e-05	ci right 2.328949e-04	k: 12	n:90000
KS ci ratio: 4.828143e-02	ci left: 6.659439e-02	ci right 6.990017e-02	k: 6141	n:90000
ARHGEF12   90000 perm   27 sec   (3315 perm/sec)   p_kst 6.823333e-02   p_cons 1.333333e-04   p_joint 1.044444e-03

Joint ci ratio: 3.860482e-01	ci left: 8.317623e-04	ci right 1.238075e-03	k: 102	n:100000
Cons ci ratio: 1.047585e+00	ci left: 6.922128e-05	ci right 2.222937e-04	k: 13	n:100000
KS ci ratio: 4.578381e-02	ci left: 6.673415e-02	ci right 6.987095e-02	k: 6829	n:100000
ARHGEF12   100000 perm   30 sec   (3285 perm/sec)   p_kst 6.829000e-02   p_cons 1.300000e-04   p_joint 1.020000e-03

Joint ci ratio: 3.653491e-01	ci left: 8.549459e-04	ci right 1.244859e-03	k: 114	n:110000
Cons ci ratio: 9.799243e-01	ci left: 7.632364e-05	ci right 2.249011e-04	k: 15	n:110000
KS ci ratio: 4.352274e-02	ci left: 6.718507e-02	ci right 7.018317e-02	k: 7554	n:110000
ARHGEF12   110000 perm   34 sec   (3254 perm/sec)   p_kst 6.867273e-02   p_cons 1.363636e-04   p_joint 1.036364e-03

Joint ci ratio: 3.299282e-01	ci left: 9.815083e-04	ci right 1.376568e-03	k: 140	n:120000
Cons ci ratio: 9.506683e-01	ci left: 7.621338e-05	ci right 2.165160e-04	k: 16	n:120000
KS ci ratio: 4.166665e-02	ci left: 6.725863e-02	ci right 7.012893e-02	k: 8242	n:120000
ARHGEF12   120000 perm   37 sec   (3220 perm/sec)   p_kst 6.868333e-02   p_cons 1.333333e-04   p_joint 1.166667e-03

Joint ci ratio: 3.253554e-01	ci left: 9.342423e-04	ci right 1.303976e-03	k: 144	n:130000
Cons ci ratio: 9.506738e-01	ci left: 7.035068e-05	ci right 1.998615e-04	k: 16	n:130000
KS ci ratio: 4.005833e-02	ci left: 6.723172e-02	ci right 6.998756e-02	k: 8918	n:130000
ARHGEF12   130000 perm   41 sec   (3185 perm/sec)   p_kst 6.860000e-02   p_cons 1.230769e-04   p_joint 1.107692e-03

Joint ci ratio: 3.116813e-01	ci left: 9.529494e-04	ci right 1.311086e-03	k: 157	n:140000
Cons ci ratio: 8.553469e-01	ci left: 8.726297e-05	ci right 2.206227e-04	k: 20	n:140000
KS ci ratio: 3.862510e-02	ci left: 6.720343e-02	ci right 6.985734e-02	k: 9593	n:140000
ARHGEF12   140000 perm   45 sec   (3144 perm/sec)   p_kst 6.852143e-02   p_cons 1.428571e-04   p_joint 1.121429e-03

Joint ci ratio: 3.335379e-01	ci left: 7.668572e-04	ci right 1.079620e-03	k: 137	n:150000
Cons ci ratio: 8.173111e-01	ci left: 9.191743e-05	ci right 2.220467e-04	k: 22	n:150000
KS ci ratio: 3.733156e-02	ci left: 6.719365e-02	ci right 6.975639e-02	k: 10270	n:150000
ARHGEF12   150000 perm   48 sec   (3102 perm/sec)   p_kst 6.846667e-02   p_cons 1.466667e-04   p_joint 9.133333e-04

Joint ci ratio: 3.670097e-01	ci left: 5.820843e-04	ci right 8.490466e-04	k: 113	n:160000
Cons ci ratio: 8.173152e-01	ci left: 8.617246e-05	ci right 2.081693e-04	k: 22	n:160000
KS ci ratio: 3.614389e-02	ci left: 6.724218e-02	ci right 6.972348e-02	k: 10956	n:160000
ARHGEF12   160000 perm   52 sec   (3070 perm/sec)   p_kst 6.847500e-02   p_cons 1.375000e-04   p_joint 7.062500e-04

Joint ci ratio: 3.533256e-01	ci left: 5.959970e-04	ci right 8.568119e-04	k: 122	n:170000
Cons ci ratio: 7.839400e-01	ci left: 9.045646e-05	ci right 2.100522e-04	k: 24	n:170000
KS ci ratio: 3.508870e-02	ci left: 6.719280e-02	ci right 6.959842e-02	k: 11626	n:170000
ARHGEF12   170000 perm   56 sec   (3034 perm/sec)   p_kst 6.838824e-02   p_cons 1.411765e-04   p_joint 7.176471e-04

Joint ci ratio: 3.519041e-01	ci left: 5.679480e-04	ci right 8.152596e-04	k: 123	n:180000
Cons ci ratio: 7.687176e-01	ci left: 8.988352e-05	ci right 2.050206e-04	k: 25	n:180000
KS ci ratio: 3.404216e-02	ci left: 6.744196e-02	ci right 6.978307e-02	k: 12349	n:180000
ARHGEF12   180000 perm   60 sec   (2994 perm/sec)   p_kst 6.860556e-02   p_cons 1.388889e-04   p_joint 6.833333e-04

Joint ci ratio: 3.533391e-01	ci left: 5.332572e-04	ci right 7.666268e-04	k: 122	n:190000
Cons ci ratio: 7.687206e-01	ci left: 8.515271e-05	ci right 1.942304e-04	k: 25	n:190000
KS ci ratio: 3.314665e-02	ci left: 6.742559e-02	ci right 6.970338e-02	k: 13026	n:190000
ARHGEF12   190000 perm   64 sec   (2948 perm/sec)   p_kst 6.855789e-02   p_cons 1.315789e-04   p_joint 6.421053e-04

Joint ci ratio: 3.450246e-01	ci left: 5.339637e-04	ci right 7.609161e-04	k: 128	n:200000
Cons ci ratio: 7.278711e-01	ci left: 9.303094e-05	ci right 2.023327e-04	k: 28	n:200000
KS ci ratio: 3.233728e-02	ci left: 6.733715e-02	ci right 6.955537e-02	k: 13688	n:200000
ARHGEF12   200000 perm   69 sec   (2906 perm/sec)   p_kst 6.844000e-02   p_cons 1.400000e-04   p_joint 6.400000e-04

Joint ci ratio: 3.360276e-01	ci left: 5.390205e-04	ci right 7.608543e-04	k: 135	n:210000
Cons ci ratio: 6.929102e-01	ci left: 1.003021e-04	ci right 2.095270e-04	k: 31	n:210000
KS ci ratio: 3.150323e-02	ci left: 6.758392e-02	ci right 6.975181e-02	k: 14419	n:210000
ARHGEF12   210000 perm   73 sec   (2879 perm/sec)   p_kst 6.866190e-02   p_cons 1.476190e-04   p_joint 6.428571e-04

Joint ci ratio: 3.372756e-01	ci left: 5.103570e-04	ci right 7.213440e-04	k: 134	n:220000
Cons ci ratio: 6.532784e-01	ci left: 1.108151e-04	ci right 2.212501e-04	k: 35	n:220000
KS ci ratio: 3.075562e-02	ci left: 6.770512e-02	ci right 6.982444e-02	k: 15127	n:220000
ARHGEF12   220000 perm   77 sec   (2850 perm/sec)   p_kst 6.875909e-02   p_cons 1.590909e-04   p_joint 6.090909e-04

Joint ci ratio: 3.533592e-01	ci left: 4.405129e-04	ci right 6.333073e-04	k: 122	n:230000
Cons ci ratio: 6.358541e-01	ci left: 1.132695e-04	ci right 2.217308e-04	k: 37	n:230000
KS ci ratio: 3.007513e-02	ci left: 6.774725e-02	ci right 6.982016e-02	k: 15819	n:230000
ARHGEF12   230000 perm   82 sec   (2819 perm/sec)   p_kst 6.877826e-02   p_cons 1.608696e-04   p_joint 5.304348e-04

Joint ci ratio: 3.736709e-01	ci left: 3.729325e-04	ci right 5.478345e-04	k: 109	n:240000
Cons ci ratio: 6.358563e-01	ci left: 1.085498e-04	ci right 2.124922e-04	k: 37	n:240000
KS ci ratio: 2.943121e-02	ci left: 6.781531e-02	ci right 6.984512e-02	k: 16518	n:240000
ARHGEF12   240000 perm   86 sec   (2790 perm/sec)   p_kst 6.882500e-02   p_cons 1.541667e-04   p_joint 4.541667e-04

Joint ci ratio: 3.670572e-01	ci left: 3.725260e-04	ci right 5.434038e-04	k: 113	n:250000
Cons ci ratio: 6.048171e-01	ci left: 1.176917e-04	ci right 2.224780e-04	k: 41	n:250000
KS ci ratio: 2.878926e-02	ci left: 6.804524e-02	ci right 7.003677e-02	k: 17259	n:250000
ARHGEF12   250000 perm   91 sec   (2757 perm/sec)   p_kst 6.903600e-02   p_cons 1.640000e-04   p_joint 4.520000e-04

Joint ci ratio: 3.607827e-01	ci left: 3.721760e-04	ci right 5.392891e-04	k: 117	n:260000
Cons ci ratio: 5.717380e-01	ci left: 1.295327e-04	ci right 2.359836e-04	k: 46	n:260000
KS ci ratio: 2.824913e-02	ci left: 6.797898e-02	ci right 6.993064e-02	k: 17927	n:260000
ARHGEF12   260000 perm   95 sec   (2725 perm/sec)   p_kst 6.895000e-02   p_cons 1.769231e-04   p_joint 4.500000e-04

Joint ci ratio: 3.577652e-01	ci left: 3.651303e-04	ci right 5.273891e-04	k: 119	n:270000
Cons ci ratio: 5.599481e-01	ci left: 1.310821e-04	ci right 2.357007e-04	k: 48	n:270000
KS ci ratio: 2.771510e-02	ci left: 6.802468e-02	ci right 6.994014e-02	k: 18624	n:270000
ARHGEF12   270000 perm   100 sec   (2695 perm/sec)   p_kst 6.897778e-02   p_cons 1.777778e-04   p_joint 4.407407e-04

Joint ci ratio: 3.562860e-01	ci left: 3.553407e-04	ci right 5.124449e-04	k: 120	n:280000
Cons ci ratio: 5.543212e-01	ci left: 1.294687e-04	ci right 2.313528e-04	k: 49	n:280000
KS ci ratio: 2.722160e-02	ci left: 6.801420e-02	ci right 6.989473e-02	k: 19306	n:280000
ARHGEF12   280000 perm   105 sec   (2666 perm/sec)   p_kst 6.895000e-02   p_cons 1.750000e-04   p_joint 4.285714e-04

Joint ci ratio: 2.362724e-01	ci left: 8.362995e-04	ci right 1.063519e-03	k: 274	n:290000
Cons ci ratio: 5.285217e-01	ci left: 1.398874e-04	ci right 2.429527e-04	k: 54	n:290000
KS ci ratio: 2.676003e-02	ci left: 6.797389e-02	ci right 6.982094e-02	k: 19979	n:290000
ARHGEF12   290000 perm   110 sec   (2642 perm/sec)   p_kst 6.889310e-02   p_cons 1.862069e-04   p_joint 9.448276e-04

Joint ci ratio: 2.362761e-01	ci left: 8.084214e-04	ci right 1.028071e-03	k: 274	n:300000
Cons ci ratio: 5.191665e-01	ci left: 1.410090e-04	ci right 2.423954e-04	k: 56	n:300000
KS ci ratio: 2.632117e-02	ci left: 6.793652e-02	ci right 6.975182e-02	k: 20652	n:300000
ARHGEF12   300000 perm   115 sec   (2611 perm/sec)   p_kst 6.884000e-02   p_cons 1.866667e-04   p_joint 9.133333e-04

Joint ci ratio: 2.425394e-01	ci left: 7.398872e-04	ci right 9.470469e-04	k: 260	n:310000
Cons ci ratio: 5.146722e-01	ci left: 1.392650e-04	ci right 2.382197e-04	k: 57	n:310000
KS ci ratio: 2.591562e-02	ci left: 6.784087e-02	ci right 6.962527e-02	k: 21306	n:310000
ARHGEF12   310000 perm   121 sec   (2572 perm/sec)   p_kst 6.872903e-02   p_cons 1.838710e-04   p_joint 8.387097e-04

Joint ci ratio: 2.444243e-01	ci left: 7.050268e-04	ci right 9.041928e-04	k: 256	n:320000
Cons ci ratio: 4.938242e-01	ci left: 1.485501e-04	ci right 2.483720e-04	k: 62	n:320000
KS ci ratio: 2.552825e-02	ci left: 6.775140e-02	ci right 6.950642e-02	k: 21960	n:320000
ARHGEF12   320000 perm   126 sec   (2541 perm/sec)   p_kst 6.862500e-02   p_cons 1.937500e-04   p_joint 8.000000e-04

Joint ci ratio: 2.425456e-01	ci left: 6.950436e-04	ci right 8.896530e-04	k: 260	n:330000
Cons ci ratio: 4.861675e-01	ci left: 1.493601e-04	ci right 2.476496e-04	k: 64	n:330000
KS ci ratio: 2.514759e-02	ci left: 6.771876e-02	ci right 6.944640e-02	k: 22631	n:330000
ARHGEF12   330000 perm   131 sec   (2516 perm/sec)   p_kst 6.857879e-02   p_cons 1.939394e-04   p_joint 7.878788e-04

Joint ci ratio: 2.393574e-01	ci left: 6.939464e-04	ci right 8.853157e-04	k: 267	n:340000
Cons ci ratio: 4.824711e-01	ci left: 1.475490e-04	ci right 2.436637e-04	k: 65	n:340000
KS ci ratio: 2.478518e-02	ci left: 6.767945e-02	ci right 6.938085e-02	k: 23299	n:340000
ARHGEF12   340000 perm   137 sec   (2481 perm/sec)   p_kst 6.852647e-02   p_cons 1.911765e-04   p_joint 7.852941e-04

Joint ci ratio: 2.407122e-01	ci left: 6.660622e-04	ci right 8.509367e-04	k: 264	n:350000
Cons ci ratio: 4.718654e-01	ci left: 1.508735e-04	ci right 2.462970e-04	k: 68	n:350000
KS ci ratio: 2.442543e-02	ci left: 6.770790e-02	ci right 6.938496e-02	k: 23990	n:350000
ARHGEF12   350000 perm   144 sec   (2428 perm/sec)   p_kst 6.854286e-02   p_cons 1.942857e-04   p_joint 7.542857e-04

Joint ci ratio: 2.393626e-01	ci left: 6.553922e-04	ci right 8.361338e-04	k: 267	n:360000
Cons ci ratio: 4.651719e-01	ci left: 1.515820e-04	ci right 2.456626e-04	k: 70	n:360000
KS ci ratio: 2.408928e-02	ci left: 6.769075e-02	ci right 6.934398e-02	k: 24665	n:360000
ARHGEF12   360000 perm   152 sec   (2375 perm/sec)   p_kst 6.851389e-02   p_cons 1.944444e-04   p_joint 7.416667e-04

Joint ci ratio: 2.380355e-01	ci left: 6.453017e-04	ci right 8.221283e-04	k: 270	n:370000
Cons ci ratio: 4.587554e-01	ci left: 1.522613e-04	ci right 2.450535e-04	k: 72	n:370000
KS ci ratio: 2.379133e-02	ci left: 6.754296e-02	ci right 6.917191e-02	k: 25291	n:370000
ARHGEF12   370000 perm   159 sec   (2330 perm/sec)   p_kst 6.835405e-02   p_cons 1.945946e-04   p_joint 7.297297e-04

Joint ci ratio: 2.362990e-01	ci left: 6.382206e-04	ci right 8.116444e-04	k: 274	n:380000
Cons ci ratio: 4.556458e-01	ci left: 1.505828e-04	ci right 2.415376e-04	k: 73	n:380000
KS ci ratio: 2.347648e-02	ci left: 6.755227e-02	ci right 6.915959e-02	k: 25974	n:380000
ARHGEF12   380000 perm   165 sec   (2299 perm/sec)   p_kst 6.835263e-02   p_cons 1.921053e-04   p_joint 7.210526e-04

Joint ci ratio: 2.262340e-01	ci left: 6.822482e-04	ci right 8.586389e-04	k: 299	n:390000
Cons ci ratio: 4.131561e-01	ci left: 1.832713e-04	ci right 2.808187e-04	k: 89	n:390000
KS ci ratio: 2.318080e-02	ci left: 6.752297e-02	ci right 6.910909e-02	k: 26642	n:390000
ARHGEF12   390000 perm   171 sec   (2281 perm/sec)   p_kst 6.831282e-02   p_cons 2.282051e-04   p_joint 7.666667e-04

Joint ci ratio: 2.243727e-01	ci left: 6.769864e-04	ci right 8.503775e-04	k: 304	n:400000
Cons ci ratio: 4.108804e-01	ci left: 1.809303e-04	ci right 2.765561e-04	k: 90	n:400000
KS ci ratio: 2.288479e-02	ci left: 6.755743e-02	ci right 6.912383e-02	k: 27335	n:400000
ARHGEF12   400000 perm   179 sec   (2238 perm/sec)   p_kst 6.833750e-02   p_cons 2.250000e-04   p_joint 7.600000e-04

Joint ci ratio: 2.243748e-01	ci left: 6.604739e-04	ci right 8.296375e-04	k: 304	n:410000
Cons ci ratio: 4.021364e-01	ci left: 1.852760e-04	ci right 2.805591e-04	k: 94	n:410000
KS ci ratio: 2.260848e-02	ci left: 6.754181e-02	ci right 6.908869e-02	k: 28008	n:410000
ARHGEF12   410000 perm   185 sec   (2222 perm/sec)   p_kst 6.831220e-02   p_cons 2.292683e-04   p_joint 7.414634e-04

Joint ci ratio: 2.232805e-01	ci left: 6.514903e-04	ci right 8.174274e-04	k: 307	n:420000
Cons ci ratio: 3.979693e-01	ci left: 1.851474e-04	ci right 2.791178e-04	k: 96	n:420000
KS ci ratio: 2.234363e-02	ci left: 6.751756e-02	ci right 6.904554e-02	k: 28677	n:420000
ARHGEF12   420000 perm   190 sec   (2208 perm/sec)   p_kst 6.827857e-02   p_cons 2.285714e-04   p_joint 7.309524e-04

Joint ci ratio: 2.247477e-01	ci left: 6.275582e-04	ci right 7.885953e-04	k: 303	n:430000
Cons ci ratio: 3.979703e-01	ci left: 1.808416e-04	ci right 2.726268e-04	k: 96	n:430000
KS ci ratio: 2.208423e-02	ci left: 6.751537e-02	ci right 6.902534e-02	k: 29355	n:430000
ARHGEF12   430000 perm   196 sec   (2192 perm/sec)   p_kst 6.826744e-02   p_cons 2.232558e-04   p_joint 7.046512e-04

Joint ci ratio: 2.285424e-01	ci left: 5.918571e-04	ci right 7.466591e-04	k: 293	n:440000
Cons ci ratio: 3.939301e-01	ci left: 1.808243e-04	ci right 2.714266e-04	k: 98	n:440000
KS ci ratio: 2.182704e-02	ci left: 6.755182e-02	ci right 6.904478e-02	k: 30050	n:440000
ARHGEF12   440000 perm   202 sec   (2177 perm/sec)   p_kst 6.829545e-02   p_cons 2.227273e-04   p_joint 6.659091e-04

Joint ci ratio: 2.281561e-01	ci left: 5.807995e-04	ci right 7.324164e-04	k: 294	n:450000
Cons ci ratio: 3.939310e-01	ci left: 1.768060e-04	ci right 2.653950e-04	k: 98	n:450000
KS ci ratio: 2.158578e-02	ci left: 6.754473e-02	ci right 6.902083e-02	k: 30726	n:450000
ARHGEF12   450000 perm   208 sec   (2163 perm/sec)   p_kst 6.828000e-02   p_cons 2.177778e-04   p_joint 6.533333e-04

Joint ci ratio: 2.266255e-01	ci left: 5.763736e-04	ci right 7.256846e-04	k: 298	n:460000
Cons ci ratio: 3.939320e-01	ci left: 1.729623e-04	ci right 2.596257e-04	k: 98	n:460000
KS ci ratio: 2.134943e-02	ci left: 6.755535e-02	ci right 6.901532e-02	k: 31410	n:460000
ARHGEF12   460000 perm   215 sec   (2143 perm/sec)   p_kst 6.828261e-02   p_cons 2.130435e-04   p_joint 6.478261e-04

Joint ci ratio: 2.317237e-01	ci left: 5.380372e-04	ci right 6.810017e-04	k: 285	n:470000
Cons ci ratio: 3.919579e-01	ci left: 1.711996e-04	ci right 2.564387e-04	k: 99	n:470000
KS ci ratio: 2.112634e-02	ci left: 6.753172e-02	ci right 6.897574e-02	k: 32078	n:470000
ARHGEF12   470000 perm   221 sec   (2129 perm/sec)   p_kst 6.825106e-02   p_cons 2.106383e-04   p_joint 6.063830e-04

Joint ci ratio: 2.281608e-01	ci left: 5.444983e-04	ci right 6.866420e-04	k: 294	n:480000
Cons ci ratio: 3.900131e-01	ci left: 1.695114e-04	ci right 2.533834e-04	k: 100	n:480000
KS ci ratio: 2.090872e-02	ci left: 6.751744e-02	ci right 6.894611e-02	k: 32750	n:480000
ARHGEF12   480000 perm   227 sec   (2110 perm/sec)   p_kst 6.822917e-02   p_cons 2.083333e-04   p_joint 6.125000e-04

Joint ci ratio: 2.240213e-01	ci left: 5.545641e-04	ci right 6.963467e-04	k: 305	n:490000
Cons ci ratio: 3.825114e-01	ci left: 1.734227e-04	ci right 2.571644e-04	k: 104	n:490000
KS ci ratio: 2.069304e-02	ci left: 6.753226e-02	ci right 6.894632e-02	k: 33436	n:490000
ARHGEF12   490000 perm   234 sec   (2097 perm/sec)   p_kst 6.823673e-02   p_cons 2.122449e-04   p_joint 6.224490e-04

Joint ci ratio: 2.258768e-01	ci left: 5.340356e-04	ci right 6.718581e-04	k: 300	n:500000
Cons ci ratio: 3.754266e-01	ci left: 1.771922e-04	ci right 2.607796e-04	k: 108	n:500000
KS ci ratio: 2.046814e-02	ci left: 6.764409e-02	ci right 6.904492e-02	k: 34171	n:500000
ARHGEF12   500000 perm   240 sec   (2082 perm/sec)   p_kst 6.834200e-02   p_cons 2.160000e-04   p_joint 6.000000e-04

Joint ci ratio: 2.247602e-01	ci left: 5.291146e-04	ci right 6.648984e-04	k: 303	n:510000
Cons ci ratio: 3.720291e-01	ci left: 1.772711e-04	ci right 2.599545e-04	k: 110	n:510000
KS ci ratio: 2.027067e-02	ci left: 6.762476e-02	ci right 6.901152e-02	k: 34841	n:510000
ARHGEF12   510000 perm   247 sec   (2066 perm/sec)   p_kst 6.831569e-02   p_cons 2.156863e-04   p_joint 5.941176e-04

Joint ci ratio: 2.218595e-01	ci left: 5.334635e-04	ci right 6.683555e-04	k: 311	n:520000
Cons ci ratio: 3.720299e-01	ci left: 1.738620e-04	ci right 2.549555e-04	k: 110	n:520000
KS ci ratio: 2.007365e-02	ci left: 6.763878e-02	ci right 6.901219e-02	k: 35528	n:520000
ARHGEF12   520000 perm   254 sec   (2050 perm/sec)   p_kst 6.832308e-02   p_cons 2.115385e-04   p_joint 5.980769e-04

Joint ci ratio: 2.204513e-01	ci left: 5.305272e-04	ci right 6.637097e-04	k: 315	n:530000
Cons ci ratio: 3.703657e-01	ci left: 1.722923e-04	ci right 2.522071e-04	k: 111	n:530000
KS ci ratio: 1.988817e-02	ci left: 6.761477e-02	ci right 6.897486e-02	k: 36195	n:530000
ARHGEF12   530000 perm   260 sec   (2035 perm/sec)   p_kst 6.829245e-02   p_cons 2.094340e-04   p_joint 5.943396e-04

Joint ci ratio: 2.229370e-01	ci left: 5.084588e-04	ci right 6.377381e-04	k: 308	n:540000
Cons ci ratio: 3.703664e-01	ci left: 1.691017e-04	ci right 2.475367e-04	k: 111	n:540000
KS ci ratio: 1.970228e-02	ci left: 6.762673e-02	ci right 6.897421e-02	k: 36881	n:540000
ARHGEF12   540000 perm   267 sec   (2021 perm/sec)   p_kst 6.829815e-02   p_cons 2.055556e-04   p_joint 5.703704e-04

Joint ci ratio: 2.211550e-01	ci left: 5.077994e-04	ci right 6.357386e-04	k: 313	n:550000
Cons ci ratio: 3.687244e-01	ci left: 1.676764e-04	ci right 2.450224e-04	k: 112	n:550000
KS ci ratio: 1.953407e-02	ci left: 6.755686e-02	ci right 6.889133e-02	k: 37522	n:550000
ARHGEF12   550000 perm   275 sec   (2003 perm/sec)   p_kst 6.822182e-02   p_cons 2.036364e-04   p_joint 5.690909e-04

Joint ci ratio: 2.187302e-01	ci left: 5.105430e-04	ci right 6.375735e-04	k: 320	n:560000
Cons ci ratio: 3.623659e-01	ci left: 1.711691e-04	ci right 2.484430e-04	k: 116	n:560000
KS ci ratio: 1.936465e-02	ci left: 6.752509e-02	ci right 6.884723e-02	k: 38183	n:560000
ARHGEF12   560000 perm   282 sec   (1988 perm/sec)   p_kst 6.818393e-02   p_cons 2.071429e-04   p_joint 5.714286e-04

Joint ci ratio: 2.160540e-01	ci left: 5.148572e-04	ci right 6.411859e-04	k: 328	n:570000
Cons ci ratio: 3.608276e-01	ci left: 1.697611e-04	ci right 2.459975e-04	k: 117	n:570000
KS ci ratio: 1.919241e-02	ci left: 6.754165e-02	ci right 6.885222e-02	k: 38871	n:570000
ARHGEF12   570000 perm   289 sec   (1975 perm/sec)   p_kst 6.819474e-02   p_cons 2.052632e-04   p_joint 5.754386e-04

Joint ci ratio: 2.144309e-01	ci left: 5.141363e-04	ci right 6.392157e-04	k: 333	n:580000
Cons ci ratio: 3.578081e-01	ci left: 1.699712e-04	ci right 2.455144e-04	k: 119	n:580000
KS ci ratio: 1.903294e-02	ci left: 6.750275e-02	ci right 6.880157e-02	k: 39527	n:580000
ARHGEF12   580000 perm   296 sec   (1962 perm/sec)   p_kst 6.815000e-02   p_cons 2.051724e-04   p_joint 5.741379e-04

Joint ci ratio: 2.131586e-01	ci left: 5.118388e-04	ci right 6.355238e-04	k: 337	n:590000
Cons ci ratio: 3.534174e-01	ci left: 1.717209e-04	ci right 2.468903e-04	k: 122	n:590000
KS ci ratio: 1.887134e-02	ci left: 6.750572e-02	ci right 6.879344e-02	k: 40207	n:590000
ARHGEF12   590000 perm   303 sec   (1949 perm/sec)   p_kst 6.814746e-02   p_cons 2.067797e-04   p_joint 5.711864e-04

Joint ci ratio: 2.190760e-01	ci left: 4.749306e-04	ci right 5.933121e-04	k: 319	n:600000
Cons ci ratio: 3.687275e-01	ci left: 1.537032e-04	ci right 2.246042e-04	k: 112	n:600000
KS ci ratio: 1.871550e-02	ci left: 6.749701e-02	ci right 6.877383e-02	k: 40880	n:600000
ARHGEF12   600000 perm   310 sec   (1936 perm/sec)   p_kst 6.813333e-02   p_cons 1.866667e-04   p_joint 5.316667e-04

Joint ci ratio: 2.157303e-01	ci left: 4.826459e-04	ci right 6.008700e-04	k: 329	n:610000
Cons ci ratio: 3.623691e-01	ci left: 1.571386e-04	ci right 2.280792e-04	k: 116	n:610000
KS ci ratio: 1.856107e-02	ci left: 6.750496e-02	ci right 6.877127e-02	k: 41563	n:610000
ARHGEF12   610000 perm   317 sec   (1923 perm/sec)   p_kst 6.813607e-02   p_cons 1.901639e-04   p_joint 5.393443e-04

Joint ci ratio: 2.150802e-01	ci left: 4.779129e-04	ci right 5.945783e-04	k: 331	n:620000
Cons ci ratio: 3.608306e-01	ci left: 1.560705e-04	ci right 2.261594e-04	k: 117	n:620000
KS ci ratio: 1.840035e-02	ci left: 6.758175e-02	ci right 6.883841e-02	k: 42289	n:620000
ARHGEF12   620000 perm   325 sec   (1910 perm/sec)   p_kst 6.820806e-02   p_cons 1.887097e-04   p_joint 5.338710e-04

Joint ci ratio: 2.128477e-01	ci left: 4.808428e-04	ci right 5.968461e-04	k: 338	n:630000
Cons ci ratio: 3.578110e-01	ci left: 1.564812e-04	ci right 2.260295e-04	k: 119	n:630000
KS ci ratio: 1.824737e-02	ci left: 6.763086e-02	ci right 6.887787e-02	k: 42999	n:630000
ARHGEF12   630000 perm   333 sec   (1892 perm/sec)   p_kst 6.825238e-02   p_cons 1.888889e-04   p_joint 5.365079e-04

Joint ci ratio: 2.112953e-01	ci left: 4.807273e-04	ci right 5.957472e-04	k: 343	n:640000
Cons ci ratio: 3.534203e-01	ci left: 1.583050e-04	ci right 2.276023e-04	k: 122	n:640000
KS ci ratio: 1.810348e-02	ci left: 6.764114e-02	ci right 6.887840e-02	k: 43685	n:640000
ARHGEF12   640000 perm   340 sec   (1881 perm/sec)   p_kst 6.825781e-02   p_cons 1.906250e-04   p_joint 5.359375e-04

Joint ci ratio: 2.091775e-01	ci left: 4.835338e-04	ci right 5.979171e-04	k: 350	n:650000
Cons ci ratio: 3.519925e-01	ci left: 1.572717e-04	ci right 2.257750e-04	k: 123	n:650000
KS ci ratio: 1.796012e-02	ci left: 6.767105e-02	ci right 6.889896e-02	k: 44384	n:650000
ARHGEF12   650000 perm   348 sec   (1868 perm/sec)   p_kst 6.828308e-02   p_cons 1.892308e-04   p_joint 5.384615e-04

Joint ci ratio: 2.079959e-01	ci left: 4.819515e-04	ci right 5.952346e-04	k: 354	n:660000
Cons ci ratio: 3.464485e-01	ci left: 1.604179e-04	ci right 2.289442e-04	k: 127	n:660000
KS ci ratio: 1.782287e-02	ci left: 6.768048e-02	ci right 6.889907e-02	k: 45070	n:660000
ARHGEF12   660000 perm   356 sec   (1856 perm/sec)   p_kst 6.828788e-02   p_cons 1.924242e-04   p_joint 5.363636e-04

Joint ci ratio: 2.068341e-01	ci left: 4.804182e-04	ci right 5.926303e-04	k: 358	n:670000
Cons ci ratio: 3.464490e-01	ci left: 1.580235e-04	ci right 2.255271e-04	k: 127	n:670000
KS ci ratio: 1.768416e-02	ci left: 6.772236e-02	ci right 6.893212e-02	k: 45778	n:670000
ARHGEF12   670000 perm   363 sec   (1845 perm/sec)   p_kst 6.832537e-02   p_cons 1.895522e-04   p_joint 5.343284e-04

Joint ci ratio: 2.082913e-01	ci left: 4.663821e-04	ci right 5.761811e-04	k: 353	n:680000
Cons ci ratio: 3.451038e-01	ci left: 1.570425e-04	ci right 2.238084e-04	k: 128	n:680000
KS ci ratio: 1.755167e-02	ci left: 6.774108e-02	ci right 6.894202e-02	k: 46471	n:680000
ARHGEF12   680000 perm   371 sec   (1833 perm/sec)   p_kst 6.833971e-02   p_cons 1.882353e-04   p_joint 5.191176e-04

Joint ci ratio: 2.082920e-01	ci left: 4.596228e-04	ci right 5.678309e-04	k: 353	n:690000
Cons ci ratio: 3.437741e-01	ci left: 1.560905e-04	ci right 2.221390e-04	k: 129	n:690000
KS ci ratio: 1.743006e-02	ci left: 6.770155e-02	ci right 6.889339e-02	k: 47124	n:690000
ARHGEF12   690000 perm   379 sec   (1822 perm/sec)   p_kst 6.829565e-02   p_cons 1.869565e-04   p_joint 5.115942e-04

Joint ci ratio: 2.215218e-01	ci left: 3.976333e-04	ci right 4.980049e-04	k: 312	n:700000
Cons ci ratio: 3.386038e-01	ci left: 1.590854e-04	ci right 2.251675e-04	k: 133	n:700000
KS ci ratio: 1.729618e-02	ci left: 6.777131e-02	ci right 6.895512e-02	k: 47853	n:700000
ARHGEF12   700000 perm   387 sec   (1811 perm/sec)   p_kst 6.836143e-02   p_cons 1.900000e-04   p_joint 4.457143e-04

Joint ci ratio: 1.766659e-01	ci left: 6.317436e-04	ci right 7.554876e-04	k: 491	n:710000
Cons ci ratio: 3.361048e-01	ci left: 1.594230e-04	ci right 2.250508e-04	k: 135	n:710000
KS ci ratio: 1.717729e-02	ci left: 6.775076e-02	ci right 6.892600e-02	k: 48519	n:710000
ARHGEF12   710000 perm   394 sec   (1800 perm/sec)   p_kst 6.833662e-02   p_cons 1.901408e-04   p_joint 6.915493e-04

Joint ci ratio: 1.759524e-01	ci left: 6.282797e-04	ci right 7.507953e-04	k: 495	n:720000
Cons ci ratio: 3.348761e-01	ci left: 1.584807e-04	ci right 2.234305e-04	k: 136	n:720000
KS ci ratio: 1.706343e-02	ci left: 6.771145e-02	ci right 6.887814e-02	k: 49171	n:720000
ARHGEF12   720000 perm   402 sec   (1789 perm/sec)   p_kst 6.829306e-02   p_cons 1.888889e-04   p_joint 6.875000e-04

Joint ci ratio: 1.743772e-01	ci left: 6.314615e-04	ci right 7.533791e-04	k: 504	n:730000
Cons ci ratio: 3.324582e-01	ci left: 1.588200e-04	ci right 2.233383e-04	k: 138	n:730000
KS ci ratio: 1.694687e-02	ci left: 6.771007e-02	ci right 6.886870e-02	k: 49850	n:730000
ARHGEF12   730000 perm   411 sec   (1778 perm/sec)   p_kst 6.828767e-02   p_cons 1.890411e-04   p_joint 6.904110e-04

Joint ci ratio: 1.736911e-01	ci left: 6.280981e-04	ci right 7.488391e-04	k: 508	n:740000
Cons ci ratio: 3.300919e-01	ci left: 1.591517e-04	ci right 2.232469e-04	k: 140	n:740000
KS ci ratio: 1.682231e-02	ci left: 6.778684e-02	ci right 6.893817e-02	k: 50587	n:740000
ARHGEF12   740000 perm   419 sec   (1768 perm/sec)   p_kst 6.836081e-02   p_cons 1.891892e-04   p_joint 6.864865e-04

Joint ci ratio: 1.726764e-01	ci left: 6.273766e-04	ci right 7.472010e-04	k: 514	n:750000
Cons ci ratio: 3.300923e-01	ci left: 1.570297e-04	ci right 2.202703e-04	k: 140	n:750000
KS ci ratio: 1.671147e-02	ci left: 6.777791e-02	ci right 6.892143e-02	k: 51261	n:750000
ARHGEF12   750000 perm   427 sec   (1757 perm/sec)   p_kst 6.834800e-02   p_cons 1.866667e-04   p_joint 6.853333e-04

Joint ci ratio: 1.711868e-01	ci left: 6.304543e-04	ci right 7.497205e-04	k: 523	n:760000
Cons ci ratio: 3.289281e-01	ci left: 1.561704e-04	ci right 2.187963e-04	k: 141	n:760000
KS ci ratio: 1.660227e-02	ci left: 6.777317e-02	ci right 6.890907e-02	k: 51938	n:760000
ARHGEF12   760000 perm   435 sec   (1747 perm/sec)   p_kst 6.833947e-02   p_cons 1.855263e-04   p_joint 6.881579e-04

Joint ci ratio: 1.706993e-01	ci left: 6.259959e-04	ci right 7.440467e-04	k: 526	n:770000
Cons ci ratio: 3.289285e-01	ci left: 1.541422e-04	ci right 2.159548e-04	k: 141	n:770000
KS ci ratio: 1.649822e-02	ci left: 6.774529e-02	ci right 6.887354e-02	k: 52597	n:770000
ARHGEF12   770000 perm   443 sec   (1737 perm/sec)   p_kst 6.830779e-02   p_cons 1.831169e-04   p_joint 6.831169e-04

Joint ci ratio: 1.692599e-01	ci left: 6.290180e-04	ci right 7.465364e-04	k: 535	n:780000
Cons ci ratio: 3.255078e-01	ci left: 1.556963e-04	ci right 2.173471e-04	k: 144	n:780000
KS ci ratio: 1.639280e-02	ci left: 6.774370e-02	ci right 6.886464e-02	k: 53276	n:780000
ARHGEF12   780000 perm   452 sec   (1727 perm/sec)   p_kst 6.830256e-02   p_cons 1.846154e-04   p_joint 6.858974e-04

Joint ci ratio: 1.681654e-01	ci left: 6.295423e-04	ci right 7.463211e-04	k: 542	n:790000
Cons ci ratio: 3.255082e-01	ci left: 1.537254e-04	ci right 2.145959e-04	k: 144	n:790000
KS ci ratio: 1.628726e-02	ci left: 6.775856e-02	ci right 6.887246e-02	k: 53968	n:790000
ARHGEF12   790000 perm   460 sec   (1717 perm/sec)   p_kst 6.831392e-02   p_cons 1.822785e-04   p_joint 6.860759e-04

Joint ci ratio: 1.680114e-01	ci left: 6.228703e-04	ci right 7.382949e-04	k: 543	n:800000
Cons ci ratio: 3.243917e-01	ci left: 1.529519e-04	ci right 2.132651e-04	k: 145	n:800000
KS ci ratio: 1.618994e-02	ci left: 6.772450e-02	ci right 6.883113e-02	k: 54621	n:800000
ARHGEF12   800000 perm   469 sec   (1706 perm/sec)   p_kst 6.827625e-02   p_cons 1.812500e-04   p_joint 6.787500e-04

Joint ci ratio: 1.680121e-01	ci left: 6.151803e-04	ci right 7.291804e-04	k: 543	n:810000
Cons ci ratio: 3.221924e-01	ci left: 1.533324e-04	ci right 2.133010e-04	k: 147	n:810000
KS ci ratio: 1.609872e-02	ci left: 6.765686e-02	ci right 6.875610e-02	k: 55246	n:810000
ARHGEF12   810000 perm   478 sec   (1696 perm/sec)   p_kst 6.820494e-02   p_cons 1.814815e-04   p_joint 6.703704e-04

Joint ci ratio: 1.686343e-01	ci left: 6.030053e-04	ci right 7.152050e-04	k: 539	n:820000
Cons ci ratio: 3.200372e-01	ci left: 1.537049e-04	ci right 2.133347e-04	k: 149	n:820000
KS ci ratio: 1.599612e-02	ci left: 6.769296e-02	ci right 6.878571e-02	k: 55955	n:820000
ARHGEF12   820000 perm   487 sec   (1684 perm/sec)   p_kst 6.823780e-02   p_cons 1.817073e-04   p_joint 6.573171e-04

Joint ci ratio: 1.677052e-01	ci left: 6.026648e-04	ci right 7.141210e-04	k: 545	n:830000
Cons ci ratio: 3.158531e-01	ci left: 1.562879e-04	ci right 2.159669e-04	k: 153	n:830000
KS ci ratio: 1.589938e-02	ci left: 6.769699e-02	ci right 6.878314e-02	k: 56638	n:830000
ARHGEF12   830000 perm   496 sec   (1675 perm/sec)   p_kst 6.823855e-02   p_cons 1.843373e-04   p_joint 6.566265e-04

Joint ci ratio: 1.669427e-01	ci left: 6.011933e-04	ci right 7.118210e-04	k: 550	n:840000
Cons ci ratio: 3.128206e-01	ci left: 1.577170e-04	ci right 2.172481e-04	k: 156	n:840000
KS ci ratio: 1.581103e-02	ci left: 6.764757e-02	ci right 6.872684e-02	k: 57276	n:840000
ARHGEF12   840000 perm   504 sec   (1665 perm/sec)   p_kst 6.818571e-02   p_cons 1.857143e-04   p_joint 6.547619e-04

Joint ci ratio: 1.663403e-01	ci left: 5.986300e-04	ci right 7.083487e-04	k: 554	n:850000
Cons ci ratio: 3.108470e-01	ci left: 1.580304e-04	ci right 2.172287e-04	k: 158	n:850000
KS ci ratio: 1.571787e-02	ci left: 6.764974e-02	ci right 6.872262e-02	k: 57957	n:850000
ARHGEF12   850000 perm   513 sec   (1657 perm/sec)   p_kst 6.818471e-02   p_cons 1.858824e-04   p_joint 6.517647e-04

Joint ci ratio: 1.687933e-01	ci left: 5.738441e-04	ci right 6.807288e-04	k: 538	n:860000
Cons ci ratio: 3.070088e-01	ci left: 1.604835e-04	ci right 2.197133e-04	k: 162	n:860000
KS ci ratio: 1.562949e-02	ci left: 6.762638e-02	ci right 6.869281e-02	k: 58616	n:860000
ARHGEF12   860000 perm   522 sec   (1648 perm/sec)   p_kst 6.815814e-02   p_cons 1.883721e-04   p_joint 6.255814e-04

Joint ci ratio: 1.680160e-01	ci left: 5.727530e-04	ci right 6.788935e-04	k: 543	n:870000
Cons ci ratio: 3.051425e-01	ci left: 1.607612e-04	ci right 2.196627e-04	k: 164	n:870000
KS ci ratio: 1.554090e-02	ci left: 6.761732e-02	ci right 6.867751e-02	k: 59287	n:870000
ARHGEF12   870000 perm   531 sec   (1639 perm/sec)   p_kst 6.814598e-02   p_cons 1.885057e-04   p_joint 6.241379e-04

Joint ci ratio: 1.672492e-01	ci left: 5.716879e-04	ci right 6.770988e-04	k: 548	n:880000
Cons ci ratio: 3.051428e-01	ci left: 1.589343e-04	ci right 2.171666e-04	k: 164	n:880000
KS ci ratio: 1.545296e-02	ci left: 6.761528e-02	ci right 6.866938e-02	k: 59964	n:880000
ARHGEF12   880000 perm   540 sec   (1631 perm/sec)   p_kst 6.814091e-02   p_cons 1.863636e-04   p_joint 6.227273e-04

Joint ci ratio: 1.663428e-01	ci left: 5.717246e-04	ci right 6.765136e-04	k: 554	n:890000
Cons ci ratio: 3.051431e-01	ci left: 1.571485e-04	ci right 2.147266e-04	k: 164	n:890000
KS ci ratio: 1.535577e-02	ci left: 6.770175e-02	ci right 6.875050e-02	k: 60720	n:890000
ARHGEF12   890000 perm   549 sec   (1623 perm/sec)   p_kst 6.822472e-02   p_cons 1.842697e-04   p_joint 6.224719e-04

Joint ci ratio: 1.660442e-01	ci left: 5.675018e-04	ci right 6.713115e-04	k: 556	n:900000
Cons ci ratio: 3.042228e-01	ci left: 1.564286e-04	ci right 2.135365e-04	k: 165	n:900000
KS ci ratio: 1.527079e-02	ci left: 6.769995e-02	ci right 6.874283e-02	k: 61398	n:900000
ARHGEF12   900000 perm   558 sec   (1613 perm/sec)   p_kst 6.822000e-02   p_cons 1.833333e-04   p_joint 6.177778e-04

Joint ci ratio: 1.655992e-01	ci left: 5.644253e-04	ci right 6.673680e-04	k: 559	n:910000
Cons ci ratio: 3.024065e-01	ci left: 1.567402e-04	ci right 2.135545e-04	k: 167	n:910000
KS ci ratio: 1.518577e-02	ci left: 6.771026e-02	ci right 6.874744e-02	k: 62087	n:910000
ARHGEF12   910000 perm   567 sec   (1605 perm/sec)   p_kst 6.822747e-02   p_cons 1.835165e-04   p_joint 6.142857e-04

Joint ci ratio: 1.563715e-01	ci left: 6.292297e-04	ci right 7.369977e-04	k: 627	n:920000
Cons ci ratio: 3.070107e-01	ci left: 1.500170e-04	ci right 2.053844e-04	k: 162	n:920000
KS ci ratio: 1.510150e-02	ci left: 6.772577e-02	ci right 6.875738e-02	k: 62781	n:920000
ARHGEF12   920000 perm   576 sec   (1596 perm/sec)   p_kst 6.824022e-02   p_cons 1.760870e-04   p_joint 6.815217e-04

Joint ci ratio: 1.675577e-01	ci left: 5.388908e-04	ci right 6.384560e-04	k: 546	n:930000
Cons ci ratio: 3.060734e-01	ci left: 1.493965e-04	ci right 2.043337e-04	k: 163	n:930000
KS ci ratio: 1.502014e-02	ci left: 6.772811e-02	ci right 6.875415e-02	k: 63463	n:930000
ARHGEF12   930000 perm   586 sec   (1588 perm/sec)   p_kst 6.823978e-02   p_cons 1.752688e-04   p_joint 5.870968e-04

Joint ci ratio: 1.671004e-01	ci left: 5.362157e-04	ci right 6.349891e-04	k: 549	n:940000
Cons ci ratio: 3.051446e-01	ci left: 1.487895e-04	ci right 2.033051e-04	k: 164	n:940000
KS ci ratio: 1.493821e-02	ci left: 6.774632e-02	ci right 6.876698e-02	k: 64160	n:940000
ARHGEF12   940000 perm   596 sec   (1578 perm/sec)   p_kst 6.825532e-02   p_cons 1.744681e-04   p_joint 5.840426e-04

Joint ci ratio: 1.661963e-01	ci left: 5.366237e-04	ci right 6.348839e-04	k: 555	n:950000
Cons ci ratio: 3.024077e-01	ci left: 1.501405e-04	ci right 2.045629e-04	k: 167	n:950000
KS ci ratio: 1.485453e-02	ci left: 6.779038e-02	ci right 6.880594e-02	k: 64882	n:950000
ARHGEF12   950000 perm   605 sec   (1570 perm/sec)   p_kst 6.829684e-02   p_cons 1.757895e-04   p_joint 5.842105e-04

Joint ci ratio: 1.653067e-01	ci left: 5.370246e-04	ci right 6.347796e-04	k: 561	n:960000
Cons ci ratio: 3.015118e-01	ci left: 1.495393e-04	ci right 2.035524e-04	k: 168	n:960000
KS ci ratio: 1.478107e-02	ci left: 6.775776e-02	ci right 6.876777e-02	k: 65531	n:960000
ARHGEF12   960000 perm   615 sec   (1561 perm/sec)   p_kst 6.826146e-02   p_cons 1.750000e-04   p_joint 5.843750e-04

Joint ci ratio: 1.647217e-01	ci left: 5.354417e-04	ci right 6.325293e-04	k: 565	n:970000
Cons ci ratio: 3.006238e-01	ci left: 1.489507e-04	ci right 2.025625e-04	k: 169	n:970000
KS ci ratio: 1.470726e-02	ci left: 6.773815e-02	ci right 6.874278e-02	k: 66192	n:970000
ARHGEF12   970000 perm   625 sec   (1553 perm/sec)   p_kst 6.823918e-02   p_cons 1.742268e-04   p_joint 5.824742e-04

Joint ci ratio: 1.638555e-01	ci left: 5.358487e-04	ci right 6.324489e-04	k: 571	n:980000
Cons ci ratio: 2.997436e-01	ci left: 1.483744e-04	ci right 2.015925e-04	k: 170	n:980000
KS ci ratio: 1.462797e-02	ci left: 6.777590e-02	ci right 6.877563e-02	k: 66909	n:980000
ARHGEF12   980000 perm   634 sec   (1545 perm/sec)   p_kst 6.827449e-02   p_cons 1.734694e-04   p_joint 5.826531e-04

Joint ci ratio: 1.632857e-01	ci left: 5.343111e-04	ci right 6.302662e-04	k: 575	n:990000
Cons ci ratio: 2.997439e-01	ci left: 1.468756e-04	ci right 1.995563e-04	k: 170	n:990000
KS ci ratio: 1.454914e-02	ci left: 6.781995e-02	ci right 6.881490e-02	k: 67633	n:990000
ARHGEF12   990000 perm   644 sec   (1537 perm/sec)   p_kst 6.831616e-02   p_cons 1.717172e-04   p_joint 5.808081e-04

Joint ci ratio: 1.617481e-01	ci left: 5.395207e-04	ci right 6.354104e-04	k: 586	n:1000000
Cons ci ratio: 2.971484e-01	ci left: 1.481823e-04	ci right 2.007847e-04	k: 173	n:1000000
KS ci ratio: 1.448454e-02	ci left: 6.774952e-02	ci right 6.873898e-02	k: 68243	n:1000000
ARHGEF12   1000000 perm   654 sec   (1529 perm/sec)   p_kst 6.824300e-02   p_cons 1.730000e-04   p_joint 5.860000e-04

Joint ci ratio: 1.610637e-01	ci left: 5.389294e-04	ci right 6.342695e-04	k: 591	n:1010000
Cons ci ratio: 2.954552e-01	ci left: 1.485482e-04	ci right 2.009236e-04	k: 175	n:1010000
KS ci ratio: 1.441619e-02	ci left: 6.772095e-02	ci right 6.870529e-02	k: 68894	n:1010000
ARHGEF12   1010000 perm   664 sec   (1520 perm/sec)   p_kst 6.821188e-02   p_cons 1.732673e-04   p_joint 5.851485e-04

Joint ci ratio: 1.613371e-01	ci left: 5.317640e-04	ci right 6.260116e-04	k: 589	n:1020000
Cons ci ratio: 2.946195e-01	ci left: 1.479996e-04	ci right 2.000065e-04	k: 176	n:1020000
KS ci ratio: 1.434835e-02	ci left: 6.769686e-02	ci right 6.867618e-02	k: 69549	n:1020000
ARHGEF12   1020000 perm   675 sec   (1512 perm/sec)   p_kst 6.818529e-02   p_cons 1.725490e-04   p_joint 5.774510e-04

Joint ci ratio: 1.632876e-01	ci left: 5.135607e-04	ci right 6.057905e-04	k: 575	n:1030000
Cons ci ratio: 2.937909e-01	ci left: 1.474620e-04	ci right 1.991071e-04	k: 177	n:1030000
KS ci ratio: 1.427775e-02	ci left: 6.770615e-02	ci right 6.868074e-02	k: 70238	n:1030000
ARHGEF12   1030000 perm   685 sec   (1504 perm/sec)   p_kst 6.819223e-02   p_cons 1.718447e-04   p_joint 5.582524e-04

Joint ci ratio: 1.630051e-01	ci left: 5.104671e-04	ci right 6.019672e-04	k: 577	n:1040000
Cons ci ratio: 2.913458e-01	ci left: 1.487170e-04	ci right 2.002883e-04	k: 180	n:1040000
KS ci ratio: 1.420786e-02	ci left: 6.771815e-02	ci right 6.868810e-02	k: 70930	n:1040000
ARHGEF12   1040000 perm   695 sec   (1496 perm/sec)   p_kst 6.820192e-02   p_cons 1.730769e-04   p_joint 5.548077e-04

Joint ci ratio: 1.621656e-01	ci left: 5.110873e-04	ci right 6.021807e-04	k: 583	n:1050000
Cons ci ratio: 2.905444e-01	ci left: 1.481836e-04	ci right 1.994025e-04	k: 181	n:1050000
KS ci ratio: 1.414004e-02	ci left: 6.772044e-02	ci right 6.868576e-02	k: 71612	n:1050000
ARHGEF12   1050000 perm   706 sec   (1487 perm/sec)   p_kst 6.820190e-02   p_cons 1.723810e-04   p_joint 5.552381e-04

Joint ci ratio: 1.362585e-01	ci left: 7.270217e-04	ci right 8.342270e-04	k: 826	n:1060000
Cons ci ratio: 2.889610e-01	ci left: 1.485353e-04	ci right 1.995448e-04	k: 183	n:1060000
KS ci ratio: 1.407162e-02	ci left: 6.773680e-02	ci right 6.869764e-02	k: 72309	n:1060000
ARHGEF12   1060000 perm   717 sec   (1479 perm/sec)   p_kst 6.821604e-02   p_cons 1.726415e-04   p_joint 7.792453e-04

Joint ci ratio: 1.365070e-01	ci left: 7.175188e-04	ci right 8.235315e-04	k: 823	n:1070000
Cons ci ratio: 2.881791e-01	ci left: 1.480140e-04	ci right 1.986820e-04	k: 184	n:1070000
KS ci ratio: 1.400882e-02	ci left: 6.771094e-02	ci right 6.866710e-02	k: 72961	n:1070000
ARHGEF12   1070000 perm   727 sec   (1472 perm/sec)   p_kst 6.818785e-02   p_cons 1.719626e-04   p_joint 7.691589e-04

Joint ci ratio: 1.369239e-01	ci left: 7.064036e-04	ci right 8.111186e-04	k: 818	n:1080000
Cons ci ratio: 2.881793e-01	ci left: 1.466435e-04	ci right 1.968423e-04	k: 184	n:1080000
KS ci ratio: 1.394004e-02	ci left: 6.774741e-02	ci right 6.869935e-02	k: 73680	n:1080000
ARHGEF12   1080000 perm   738 sec   (1464 perm/sec)   p_kst 6.822222e-02   p_cons 1.703704e-04   p_joint 7.574074e-04

Joint ci ratio: 1.374291e-01	ci left: 6.946068e-04	ci right 7.979841e-04	k: 812	n:1090000
Cons ci ratio: 2.851132e-01	ci left: 1.487041e-04	ci right 1.989692e-04	k: 188	n:1090000
KS ci ratio: 1.387027e-02	ci left: 6.780151e-02	ci right 6.874941e-02	k: 74419	n:1090000
ARHGEF12   1090000 perm   748 sec   (1457 perm/sec)   p_kst 6.827431e-02   p_cons 1.724771e-04   p_joint 7.449541e-04

Joint ci ratio: 1.367578e-01	ci left: 6.953155e-04	ci right 7.982517e-04	k: 820	n:1100000
Cons ci ratio: 2.843620e-01	ci left: 1.481964e-04	ci right 1.981343e-04	k: 189	n:1100000
KS ci ratio: 1.380617e-02	ci left: 6.781205e-02	ci right 6.875568e-02	k: 75111	n:1100000
ARHGEF12   1100000 perm   759 sec   (1448 perm/sec)   p_kst 6.828273e-02   p_cons 1.718182e-04   p_joint 7.454545e-04

Joint ci ratio: 1.360963e-01	ci left: 6.960127e-04	ci right 7.985133e-04	k: 828	n:1110000
Cons ci ratio: 2.828770e-01	ci left: 1.485350e-04	ci right 1.982789e-04	k: 191	n:1110000
KS ci ratio: 1.374489e-02	ci left: 6.780445e-02	ci right 6.874375e-02	k: 75783	n:1110000
ARHGEF12   1110000 perm   770 sec   (1441 perm/sec)   p_kst 6.827297e-02   p_cons 1.720721e-04   p_joint 7.459459e-04

Joint ci ratio: 1.352827e-01	ci left: 6.984238e-04	ci right 8.006151e-04	k: 838	n:1120000
Cons ci ratio: 2.821433e-01	ci left: 1.480384e-04	ci right 1.974645e-04	k: 192	n:1120000
KS ci ratio: 1.368548e-02	ci left: 6.778721e-02	ci right 6.872217e-02	k: 76444	n:1120000
ARHGEF12   1120000 perm   781 sec   (1433 perm/sec)   p_kst 6.825357e-02   p_cons 1.714286e-04   p_joint 7.482143e-04

Joint ci ratio: 1.249741e-01	ci left: 8.155378e-04	ci right 9.250997e-04	k: 982	n:1130000
Cons ci ratio: 2.806927e-01	ci left: 1.483733e-04	ci right 1.976115e-04	k: 194	n:1130000
KS ci ratio: 1.362807e-02	ci left: 6.775880e-02	ci right 6.868943e-02	k: 77092	n:1130000
ARHGEF12   1130000 perm   793 sec   (1425 perm/sec)   p_kst 6.822301e-02   p_cons 1.716814e-04   p_joint 8.690265e-04

Joint ci ratio: 1.249746e-01	ci left: 8.083837e-04	ci right 9.169850e-04	k: 982	n:1140000
Cons ci ratio: 2.799758e-01	ci left: 1.478873e-04	ci right 1.968168e-04	k: 195	n:1140000
KS ci ratio: 1.356734e-02	ci left: 6.776851e-02	ci right 6.869509e-02	k: 77783	n:1140000
ARHGEF12   1140000 perm   804 sec   (1418 perm/sec)   p_kst 6.823070e-02   p_cons 1.710526e-04   p_joint 8.614035e-04

Joint ci ratio: 1.244692e-01	ci left: 8.080938e-04	ci right 9.161847e-04	k: 990	n:1150000
Cons ci ratio: 2.771616e-01	ci left: 1.498367e-04	ci right 1.988259e-04	k: 199	n:1150000
KS ci ratio: 1.351047e-02	ci left: 6.774945e-02	ci right 6.867185e-02	k: 78441	n:1150000
ARHGEF12   1150000 perm   815 sec   (1411 perm/sec)   p_kst 6.820957e-02   p_cons 1.730435e-04   p_joint 8.608696e-04

Joint ci ratio: 1.238458e-01	ci left: 8.094804e-04	ci right 9.171748e-04	k: 1000	n:1160000
Cons ci ratio: 2.771618e-01	ci left: 1.485450e-04	ci right 1.971119e-04	k: 199	n:1160000
KS ci ratio: 1.345203e-02	ci left: 6.775221e-02	ci right 6.867063e-02	k: 79124	n:1160000
ARHGEF12   1160000 perm   827 sec   (1403 perm/sec)   p_kst 6.821034e-02   p_cons 1.715517e-04   p_joint 8.620690e-04

Joint ci ratio: 1.229885e-01	ci left: 8.141583e-04	ci right 9.216706e-04	k: 1014	n:1170000
Cons ci ratio: 2.757863e-01	ci left: 1.488663e-04	ci right 1.972548e-04	k: 201	n:1170000
KS ci ratio: 1.338651e-02	ci left: 6.782906e-02	ci right 6.874401e-02	k: 79894	n:1170000
ARHGEF12   1170000 perm   838 sec   (1397 perm/sec)   p_kst 6.828547e-02   p_cons 1.717949e-04   p_joint 8.666667e-04

Joint ci ratio: 1.225067e-01	ci left: 8.138302e-04	ci right 9.208476e-04	k: 1022	n:1180000
Cons ci ratio: 2.744311e-01	ci left: 1.491827e-04	ci right 1.973947e-04	k: 203	n:1180000
KS ci ratio: 1.333587e-02	ci left: 6.777198e-02	ci right 6.868268e-02	k: 80507	n:1180000
ARHGEF12   1180000 perm   849 sec   (1390 perm/sec)   p_kst 6.822627e-02   p_cons 1.720339e-04   p_joint 8.661017e-04

Joint ci ratio: 1.217354e-01	ci left: 8.175820e-04	ci right 9.243672e-04	k: 1035	n:1190000
Cons ci ratio: 2.724350e-01	ci left: 1.502773e-04	ci right 1.984293e-04	k: 206	n:1190000
KS ci ratio: 1.328115e-02	ci left: 6.776027e-02	ci right 6.866704e-02	k: 81173	n:1190000
ARHGEF12   1190000 perm   860 sec   (1383 perm/sec)   p_kst 6.821261e-02   p_cons 1.731092e-04   p_joint 8.697479e-04

Joint ci ratio: 1.209208e-01	ci left: 8.220815e-04	ci right 9.286846e-04	k: 1049	n:1200000
Cons ci ratio: 2.717794e-01	ci left: 1.498015e-04	ci right 1.976658e-04	k: 207	n:1200000
KS ci ratio: 1.322293e-02	ci left: 6.778864e-02	ci right 6.869178e-02	k: 81887	n:1200000
ARHGEF12   1200000 perm   872 sec   (1376 perm/sec)   p_kst 6.823917e-02   p_cons 1.725000e-04   p_joint 8.741667e-04

Joint ci ratio: 1.201224e-01	ci left: 8.265090e-04	ci right 9.329282e-04	k: 1063	n:1210000
Cons ci ratio: 2.679419e-01	ci left: 1.531867e-04	ci right 2.013255e-04	k: 213	n:1210000
KS ci ratio: 1.316428e-02	ci left: 6.782808e-02	ci right 6.872771e-02	k: 82615	n:1210000
ARHGEF12   1210000 perm   884 sec   (1369 perm/sec)   p_kst 6.827686e-02   p_cons 1.760331e-04   p_joint 8.785124e-04

Joint ci ratio: 1.195061e-01	ci left: 8.284806e-04	ci right 9.345677e-04	k: 1074	n:1220000
Cons ci ratio: 2.666985e-01	ci left: 1.534606e-04	ci right 2.014242e-04	k: 215	n:1220000
KS ci ratio: 1.310952e-02	ci left: 6.783664e-02	ci right 6.873262e-02	k: 83306	n:1220000
ARHGEF12   1220000 perm   895 sec   (1363 perm/sec)   p_kst 6.828361e-02   p_cons 1.762295e-04   p_joint 8.803279e-04

Joint ci ratio: 1.190090e-01	ci left: 8.288438e-04	ci right 9.345048e-04	k: 1083	n:1230000
Cons ci ratio: 2.666987e-01	ci left: 1.522129e-04	ci right 1.997866e-04	k: 215	n:1230000
KS ci ratio: 1.305411e-02	ci left: 6.785805e-02	ci right 6.875049e-02	k: 84013	n:1230000
ARHGEF12   1230000 perm   907 sec   (1356 perm/sec)   p_kst 6.830325e-02   p_cons 1.747967e-04   p_joint 8.804878e-04

Joint ci ratio: 1.195070e-01	ci left: 8.151177e-04	ci right 9.194945e-04	k: 1074	n:1240000
Cons ci ratio: 2.660835e-01	ci left: 1.517380e-04	ci right 1.990356e-04	k: 216	n:1240000
KS ci ratio: 1.300046e-02	ci left: 6.786866e-02	ci right 6.875755e-02	k: 84707	n:1240000
ARHGEF12   1240000 perm   919 sec   (1349 perm/sec)   p_kst 6.831210e-02   p_cons 1.741935e-04   p_joint 8.661290e-04

Joint ci ratio: 1.190098e-01	ci left: 8.155820e-04	ci right 9.195532e-04	k: 1083	n:1250000
Cons ci ratio: 2.648657e-01	ci left: 1.520176e-04	ci right 1.991496e-04	k: 218	n:1250000
KS ci ratio: 1.294747e-02	ci left: 6.787911e-02	ci right 6.876449e-02	k: 85401	n:1250000
ARHGEF12   1250000 perm   931 sec   (1342 perm/sec)   p_kst 6.832080e-02   p_cons 1.744000e-04   p_joint 8.664000e-04

Joint ci ratio: 1.183564e-01	ci left: 8.183502e-04	ci right 9.220615e-04	k: 1095	n:1260000
Cons ci ratio: 2.630699e-01	ci left: 1.530345e-04	ci right 2.001071e-04	k: 221	n:1260000
KS ci ratio: 1.289223e-02	ci left: 6.791789e-02	ci right 6.879996e-02	k: 86131	n:1260000
ARHGEF12   1260000 perm   943 sec   (1336 perm/sec)   p_kst 6.835794e-02   p_cons 1.753968e-04   p_joint 8.690476e-04

Joint ci ratio: 1.179268e-01	ci left: 8.180196e-04	ci right 9.212864e-04	k: 1103	n:1270000
Cons ci ratio: 2.618928e-01	ci left: 1.533007e-04	ci right 2.002097e-04	k: 223	n:1270000
KS ci ratio: 1.284229e-02	ci left: 6.791054e-02	ci right 6.878907e-02	k: 86803	n:1270000
ARHGEF12   1270000 perm   955 sec   (1330 perm/sec)   p_kst 6.834882e-02   p_cons 1.755906e-04   p_joint 8.685039e-04

Joint ci ratio: 1.177140e-01	ci left: 8.146616e-04	ci right 9.173060e-04	k: 1107	n:1280000
Cons ci ratio: 2.607314e-01	ci left: 1.535632e-04	ci right 2.003102e-04	k: 225	n:1280000
KS ci ratio: 1.279081e-02	ci left: 6.792433e-02	ci right 6.879950e-02	k: 87502	n:1280000
ARHGEF12   1280000 perm   967 sec   (1324 perm/sec)   p_kst 6.836094e-02   p_cons 1.757812e-04   p_joint 8.648438e-04

Joint ci ratio: 1.170815e-01	ci left: 8.173756e-04	ci right 9.197704e-04	k: 1119	n:1290000
Cons ci ratio: 2.601565e-01	ci left: 1.530974e-04	ci right 1.995831e-04	k: 226	n:1290000
KS ci ratio: 1.274328e-02	ci left: 6.790469e-02	ci right 6.877632e-02	k: 88158	n:1290000
ARHGEF12   1290000 perm   979 sec   (1318 perm/sec)   p_kst 6.833953e-02   p_cons 1.751938e-04   p_joint 8.674419e-04

Joint ci ratio: 1.165622e-01	ci left: 8.185557e-04	ci right 9.206122e-04	k: 1129	n:1300000
Cons ci ratio: 2.578940e-01	ci left: 1.547969e-04	ci right 2.013240e-04	k: 230	n:1300000
KS ci ratio: 1.269459e-02	ci left: 6.790222e-02	ci right 6.877047e-02	k: 88836	n:1300000
ARHGEF12   1300000 perm   991 sec   (1312 perm/sec)   p_kst 6.833538e-02   p_cons 1.769231e-04   p_joint 8.684615e-04

Joint ci ratio: 1.162029e-01	ci left: 8.174951e-04	ci right 9.190837e-04	k: 1136	n:1310000
Cons ci ratio: 2.567848e-01	ci left: 1.550435e-04	ci right 2.014122e-04	k: 232	n:1310000
KS ci ratio: 1.264334e-02	ci left: 6.793101e-02	ci right 6.879609e-02	k: 89555	n:1310000
ARHGEF12   1310000 perm   1003 sec   (1306 perm/sec)   p_kst 6.836260e-02   p_cons 1.770992e-04   p_joint 8.671756e-04

Joint ci ratio: 1.156952e-01	ci left: 8.186580e-04	ci right 9.199162e-04	k: 1146	n:1320000
Cons ci ratio: 2.562356e-01	ci left: 1.545778e-04	ci right 2.006925e-04	k: 233	n:1320000
KS ci ratio: 1.259368e-02	ci left: 6.794954e-02	ci right 6.881144e-02	k: 90261	n:1320000
ARHGEF12   1320000 perm   1016 sec   (1300 perm/sec)   p_kst 6.837955e-02   p_cons 1.765152e-04   p_joint 8.681818e-04

Joint ci ratio: 1.150449e-01	ci left: 8.219952e-04	ci right 9.230559e-04	k: 1159	n:1330000
Cons ci ratio: 2.556899e-01	ci left: 1.541192e-04	ci right 1.999836e-04	k: 234	n:1330000
KS ci ratio: 1.254609e-02	ci left: 6.795281e-02	ci right 6.881147e-02	k: 90947	n:1330000
ARHGEF12   1330000 perm   1028 sec   (1294 perm/sec)   p_kst 6.838120e-02   p_cons 1.759398e-04   p_joint 8.714286e-04

Joint ci ratio: 1.150950e-01	ci left: 8.151359e-04	ci right 9.153998e-04	k: 1158	n:1340000
Cons ci ratio: 2.551477e-01	ci left: 1.536676e-04	ci right 1.992851e-04	k: 235	n:1340000
KS ci ratio: 1.249917e-02	ci left: 6.795455e-02	ci right 6.881000e-02	k: 91631	n:1340000
ARHGEF12   1340000 perm   1041 sec   (1288 perm/sec)   p_kst 6.838134e-02   p_cons 1.753731e-04   p_joint 8.641791e-04

Joint ci ratio: 1.151948e-01	ci left: 8.076589e-04	ci right 9.070952e-04	k: 1156	n:1350000
Cons ci ratio: 2.551479e-01	ci left: 1.525293e-04	ci right 1.978089e-04	k: 235	n:1350000
KS ci ratio: 1.245778e-02	ci left: 6.790531e-02	ci right 6.875728e-02	k: 92246	n:1350000
ARHGEF12   1350000 perm   1054 sec   (1281 perm/sec)   p_kst 6.833037e-02   p_cons 1.740741e-04   p_joint 8.562963e-04

Joint ci ratio: 1.153950e-01	ci left: 7.988637e-04	ci right 8.973997e-04	k: 1152	n:1360000
Cons ci ratio: 2.535413e-01	ci left: 1.534730e-04	ci right 1.987006e-04	k: 238	n:1360000
KS ci ratio: 1.241048e-02	ci left: 6.792131e-02	ci right 6.877023e-02	k: 92949	n:1360000
ARHGEF12   1360000 perm   1067 sec   (1275 perm/sec)   p_kst 6.834485e-02   p_cons 1.750000e-04   p_joint 8.470588e-04

Joint ci ratio: 1.156971e-01	ci left: 7.887793e-04	ci right 8.863435e-04	k: 1146	n:1370000
Cons ci ratio: 2.535415e-01	ci left: 1.523528e-04	ci right 1.972503e-04	k: 238	n:1370000
KS ci ratio: 1.236393e-02	ci left: 6.793491e-02	ci right 6.878079e-02	k: 93649	n:1370000
ARHGEF12   1370000 perm   1080 sec   (1269 perm/sec)   p_kst 6.835693e-02   p_cons 1.737226e-04   p_joint 8.364964e-04

Joint ci ratio: 1.167203e-01	ci left: 7.689916e-04	ci right 8.650074e-04	k: 1126	n:1380000
Cons ci ratio: 2.524873e-01	ci left: 1.526062e-04	ci right 1.973619e-04	k: 240	n:1380000
KS ci ratio: 1.231874e-02	ci left: 6.793964e-02	ci right 6.878246e-02	k: 94337	n:1380000
ARHGEF12   1380000 perm   1092 sec   (1263 perm/sec)   p_kst 6.836014e-02   p_cons 1.739130e-04   p_joint 8.159420e-04

Joint ci ratio: 1.164110e-01	ci left: 7.676499e-04	ci right 8.632267e-04	k: 1132	n:1390000
Cons ci ratio: 2.524874e-01	ci left: 1.515083e-04	ci right 1.959421e-04	k: 240	n:1390000
KS ci ratio: 1.226906e-02	ci left: 6.799596e-02	ci right 6.883606e-02	k: 95097	n:1390000
ARHGEF12   1390000 perm   1105 sec   (1257 perm/sec)   p_kst 6.841511e-02   p_cons 1.726619e-04   p_joint 8.143885e-04

Joint ci ratio: 1.161551e-01	ci left: 7.656342e-04	ci right 8.607362e-04	k: 1137	n:1400000
Cons ci ratio: 2.514462e-01	ci left: 1.517644e-04	ci right 1.960611e-04	k: 242	n:1400000
KS ci ratio: 1.222730e-02	ci left: 6.797527e-02	ci right 6.881223e-02	k: 95750	n:1400000
ARHGEF12   1400000 perm   1119 sec   (1251 perm/sec)   p_kst 6.839286e-02   p_cons 1.728571e-04   p_joint 8.121429e-04

Joint ci ratio: 1.162577e-01	ci left: 7.588268e-04	ci right 8.531722e-04	k: 1135	n:1410000
Cons ci ratio: 2.494017e-01	ci left: 1.533470e-04	ci right 1.976851e-04	k: 246	n:1410000
KS ci ratio: 1.218182e-02	ci left: 6.799802e-02	ci right 6.883213e-02	k: 96464	n:1410000
ARHGEF12   1410000 perm   1133 sec   (1244 perm/sec)   p_kst 6.841418e-02   p_cons 1.744681e-04   p_joint 8.049645e-04

Joint ci ratio: 1.167735e-01	ci left: 7.466457e-04	ci right 8.399169e-04	k: 1125	n:1420000
Cons ci ratio: 2.488984e-01	ci left: 1.529273e-04	ci right 1.970410e-04	k: 247	n:1420000
KS ci ratio: 1.213893e-02	ci left: 6.799868e-02	ci right 6.882984e-02	k: 97147	n:1420000
ARHGEF12   1420000 perm   1146 sec   (1239 perm/sec)   p_kst 6.841338e-02   p_cons 1.739437e-04   p_joint 7.922535e-04

Joint ci ratio: 1.165668e-01	ci left: 7.441399e-04	ci right 8.369222e-04	k: 1129	n:1430000
Cons ci ratio: 2.483982e-01	ci left: 1.525136e-04	ci right 1.964059e-04	k: 248	n:1430000
KS ci ratio: 1.209689e-02	ci left: 6.799516e-02	ci right 6.882338e-02	k: 97824	n:1430000
ARHGEF12   1430000 perm   1160 sec   (1233 perm/sec)   p_kst 6.840839e-02   p_cons 1.734266e-04   p_joint 7.895105e-04

Joint ci ratio: 1.162075e-01	ci left: 7.436918e-04	ci right 8.361128e-04	k: 1136	n:1440000
Cons ci ratio: 2.479010e-01	ci left: 1.521057e-04	ci right 1.957795e-04	k: 249	n:1440000
KS ci ratio: 1.205350e-02	ci left: 6.801038e-02	ci right 6.883580e-02	k: 98528	n:1440000
ARHGEF12   1440000 perm   1173 sec   (1227 perm/sec)   p_kst 6.842222e-02   p_cons 1.729167e-04   p_joint 7.888889e-04

Joint ci ratio: 1.157502e-01	ci left: 7.445898e-04	ci right 8.367333e-04	k: 1145	n:1450000
Cons ci ratio: 2.474067e-01	ci left: 1.517036e-04	ci right 1.951617e-04	k: 250	n:1450000
KS ci ratio: 1.201442e-02	ci left: 6.798483e-02	ci right 6.880724e-02	k: 99173	n:1450000
ARHGEF12   1450000 perm   1187 sec   (1222 perm/sec)   p_kst 6.839517e-02   p_cons 1.724138e-04   p_joint 7.896552e-04

Joint ci ratio: 1.160041e-01	ci left: 7.361643e-04	ci right 8.274786e-04	k: 1140	n:1460000
Cons ci ratio: 2.459412e-01	ci left: 1.525923e-04	ci right 1.960065e-04	k: 253	n:1460000
KS ci ratio: 1.197198e-02	ci left: 6.799925e-02	ci right 6.881890e-02	k: 99876	n:1460000
ARHGEF12   1460000 perm   1200 sec   (1217 perm/sec)   p_kst 6.840822e-02   p_cons 1.732877e-04   p_joint 7.808219e-04

Joint ci ratio: 1.154990e-01	ci left: 7.377621e-04	ci right 8.288491e-04	k: 1150	n:1470000
Cons ci ratio: 2.449786e-01	ci left: 1.528311e-04	ci right 1.961172e-04	k: 255	n:1470000
KS ci ratio: 1.193202e-02	ci left: 6.799176e-02	ci right 6.880858e-02	k: 100547	n:1470000
ARHGEF12   1470000 perm   1214 sec   (1211 perm/sec)   p_kst 6.839932e-02   p_cons 1.734694e-04   p_joint 7.823129e-04

Joint ci ratio: 1.153489e-01	ci left: 7.347457e-04	ci right 8.253344e-04	k: 1153	n:1480000
Cons ci ratio: 2.445016e-01	ci left: 1.524327e-04	ci right 1.955091e-04	k: 256	n:1480000
KS ci ratio: 1.189158e-02	ci left: 6.799382e-02	ci right 6.880787e-02	k: 101232	n:1480000
ARHGEF12   1480000 perm   1228 sec   (1206 perm/sec)   p_kst 6.840000e-02   p_cons 1.729730e-04   p_joint 7.790541e-04

Joint ci ratio: 1.148523e-01	ci left: 7.363328e-04	ci right 8.266997e-04	k: 1163	n:1490000
Cons ci ratio: 2.430868e-01	ci left: 1.533001e-04	ci right 1.963332e-04	k: 259	n:1490000
KS ci ratio: 1.185342e-02	ci left: 6.797577e-02	ci right 6.878698e-02	k: 101887	n:1490000
ARHGEF12   1490000 perm   1241 sec   (1200 perm/sec)   p_kst 6.838054e-02   p_cons 1.738255e-04   p_joint 7.805369e-04

Joint ci ratio: 1.265429e-01	ci left: 5.988708e-04	ci right 6.804106e-04	k: 958	n:1500000
Cons ci ratio: 2.430869e-01	ci left: 1.522781e-04	ci right 1.950243e-04	k: 259	n:1500000
KS ci ratio: 1.181475e-02	ci left: 6.796728e-02	ci right 6.877572e-02	k: 102556	n:1500000
ARHGEF12   1500000 perm   1255 sec   (1195 perm/sec)   p_kst 6.837067e-02   p_cons 1.726667e-04   p_joint 6.386667e-04

Joint ci ratio: 1.259531e-01	ci left: 6.006769e-04	ci right 6.820529e-04	k: 967	n:1510000
Cons ci ratio: 2.416964e-01	ci left: 1.531358e-04	ci right 1.958399e-04	k: 262	n:1510000
KS ci ratio: 1.177531e-02	ci left: 6.797145e-02	ci right 6.877722e-02	k: 103244	n:1510000
ARHGEF12   1510000 perm   1270 sec   (1189 perm/sec)   p_kst 6.837351e-02   p_cons 1.735099e-04   p_joint 6.403974e-04

Joint ci ratio: 1.255646e-01	ci left: 6.005482e-04	ci right 6.816372e-04	k: 973	n:1520000
Cons ci ratio: 2.407826e-01	ci left: 1.533646e-04	ci right 1.959467e-04	k: 264	n:1520000
KS ci ratio: 1.173449e-02	ci left: 6.799460e-02	ci right 6.879783e-02	k: 103961	n:1520000
ARHGEF12   1520000 perm   1284 sec   (1184 perm/sec)   p_kst 6.839539e-02   p_cons 1.736842e-04   p_joint 6.401316e-04

Joint ci ratio: 1.252436e-01	ci left: 5.997885e-04	ci right 6.805525e-04	k: 978	n:1530000
Cons ci ratio: 2.398791e-01	ci left: 1.535906e-04	ci right 1.960517e-04	k: 266	n:1530000
KS ci ratio: 1.169812e-02	ci left: 6.797378e-02	ci right 6.877426e-02	k: 104611	n:1530000
ARHGEF12   1530000 perm   1298 sec   (1179 perm/sec)   p_kst 6.837320e-02   p_cons 1.738562e-04   p_joint 6.392157e-04

Joint ci ratio: 1.251161e-01	ci left: 5.971518e-04	ci right 6.774727e-04	k: 980	n:1540000
Cons ci ratio: 2.398792e-01	ci left: 1.525933e-04	ci right 1.947787e-04	k: 266	n:1540000
KS ci ratio: 1.165929e-02	ci left: 6.798367e-02	ci right 6.878159e-02	k: 105308	n:1540000
ARHGEF12   1540000 perm   1312 sec   (1174 perm/sec)   p_kst 6.838182e-02   p_cons 1.727273e-04   p_joint 6.363636e-04

Joint ci ratio: 1.256299e-01	ci left: 5.882996e-04	ci right 6.677791e-04	k: 972	n:1550000
Cons ci ratio: 2.394313e-01	ci left: 1.522152e-04	ci right 1.942059e-04	k: 267	n:1550000
KS ci ratio: 1.162061e-02	ci left: 6.799601e-02	ci right 6.879141e-02	k: 106009	n:1550000
ARHGEF12   1550000 perm   1326 sec   (1169 perm/sec)   p_kst 6.839290e-02   p_cons 1.722581e-04   p_joint 6.270968e-04

Joint ci ratio: 1.250528e-01	ci left: 5.901168e-04	ci right 6.694484e-04	k: 981	n:1560000
Cons ci ratio: 2.381023e-01	ci left: 1.530476e-04	ci right 1.949989e-04	k: 270	n:1560000
KS ci ratio: 1.158662e-02	ci left: 6.796089e-02	ci right 6.875354e-02	k: 106636	n:1560000
ARHGEF12   1560000 perm   1340 sec   (1164 perm/sec)   p_kst 6.835641e-02   p_cons 1.730769e-04   p_joint 6.288462e-04

Joint ci ratio: 1.255659e-01	ci left: 5.814221e-04	ci right 6.599294e-04	k: 973	n:1570000
Cons ci ratio: 2.355091e-01	ci left: 1.556677e-04	ci right 1.978048e-04	k: 276	n:1570000
KS ci ratio: 1.154987e-02	ci left: 6.795988e-02	ci right 6.874999e-02	k: 107316	n:1570000
ARHGEF12   1570000 perm   1355 sec   (1159 perm/sec)   p_kst 6.835414e-02   p_cons 1.757962e-04   p_joint 6.197452e-04

Joint ci ratio: 1.253731e-01	ci left: 5.795814e-04	ci right 6.577110e-04	k: 976	n:1580000
Cons ci ratio: 2.350852e-01	ci left: 1.552780e-04	ci right 1.972230e-04	k: 277	n:1580000
KS ci ratio: 1.151237e-02	ci left: 6.797089e-02	ci right 6.875854e-02	k: 108015	n:1580000
ARHGEF12   1580000 perm   1370 sec   (1154 perm/sec)   p_kst 6.836392e-02   p_cons 1.753165e-04   p_joint 6.177215e-04

Joint ci ratio: 1.249263e-01	ci left: 5.802009e-04	ci right 6.581147e-04	k: 983	n:1590000
Cons ci ratio: 2.342441e-01	ci left: 1.554854e-04	ci right 1.973143e-04	k: 279	n:1590000
KS ci ratio: 1.147558e-02	ci left: 6.797800e-02	ci right 6.876320e-02	k: 108708	n:1590000
ARHGEF12   1590000 perm   1384 sec   (1149 perm/sec)   p_kst 6.836981e-02   p_cons 1.754717e-04   p_joint 6.182390e-04

Joint ci ratio: 1.244215e-01	ci left: 5.814187e-04	ci right 6.591573e-04	k: 991	n:1600000
Cons ci ratio: 2.338270e-01	ci left: 1.551019e-04	ci right 1.967426e-04	k: 280	n:1600000
KS ci ratio: 1.144122e-02	ci left: 6.796196e-02	ci right 6.874461e-02	k: 109364	n:1600000
ARHGEF12   1600000 perm   1399 sec   (1144 perm/sec)   p_kst 6.835250e-02   p_cons 1.750000e-04   p_joint 6.193750e-04

Joint ci ratio: 1.246735e-01	ci left: 5.754002e-04	ci right 6.525015e-04	k: 987	n:1610000
Cons ci ratio: 2.334121e-01	ci left: 1.547233e-04	ci right 1.961780e-04	k: 281	n:1610000
KS ci ratio: 1.140605e-02	ci left: 6.795851e-02	ci right 6.873870e-02	k: 110040	n:1610000
ARHGEF12   1610000 perm   1413 sec   (1139 perm/sec)   p_kst 6.834783e-02   p_cons 1.745342e-04   p_joint 6.130435e-04

Joint ci ratio: 1.239850e-01	ci left: 5.784274e-04	ci right 6.554748e-04	k: 998	n:1620000
Cons ci ratio: 2.321803e-01	ci left: 1.555121e-04	ci right 1.969267e-04	k: 284	n:1620000
KS ci ratio: 1.137049e-02	ci left: 6.796311e-02	ci right 6.874090e-02	k: 110729	n:1620000
ARHGEF12   1620000 perm   1428 sec   (1135 perm/sec)   p_kst 6.835123e-02   p_cons 1.753086e-04   p_joint 6.160494e-04

Joint ci ratio: 1.235529e-01	ci left: 5.790403e-04	ci right 6.558809e-04	k: 1005	n:1630000
Cons ci ratio: 2.313698e-01	ci left: 1.557138e-04	ci right 1.970167e-04	k: 286	n:1630000
KS ci ratio: 1.133400e-02	ci left: 6.798173e-02	ci right 6.875723e-02	k: 111441	n:1630000
ARHGEF12   1630000 perm   1442 sec   (1130 perm/sec)   p_kst 6.836871e-02   p_cons 1.754601e-04   p_joint 6.165644e-04

Joint ci ratio: 1.230038e-01	ci left: 5.808282e-04	ci right 6.575385e-04	k: 1014	n:1640000
Cons ci ratio: 2.301699e-01	ci left: 1.564879e-04	ci right 1.977502e-04	k: 289	n:1640000
KS ci ratio: 1.129711e-02	ci left: 6.800864e-02	ci right 6.878190e-02	k: 112167	n:1640000
ARHGEF12   1640000 perm   1456 sec   (1126 perm/sec)   p_kst 6.839451e-02   p_cons 1.762195e-04   p_joint 6.182927e-04

Joint ci ratio: 1.225218e-01	ci left: 5.820076e-04	ci right 6.585507e-04	k: 1022	n:1650000
Cons ci ratio: 2.289884e-01	ci left: 1.572531e-04	ci right 1.984743e-04	k: 292	n:1650000
KS ci ratio: 1.126448e-02	ci left: 6.799111e-02	ci right 6.876192e-02	k: 112820	n:1650000
ARHGEF12   1650000 perm   1472 sec   (1121 perm/sec)   p_kst 6.837576e-02   p_cons 1.769697e-04   p_joint 6.193939e-04

Joint ci ratio: 1.222831e-01	ci left: 5.808374e-04	ci right 6.570669e-04	k: 1026	n:1660000
Cons ci ratio: 2.285987e-01	ci left: 1.568736e-04	ci right 1.979155e-04	k: 293	n:1660000
KS ci ratio: 1.122964e-02	ci left: 6.800203e-02	ci right 6.877056e-02	k: 113520	n:1660000
ARHGEF12   1660000 perm   1487 sec   (1117 perm/sec)   p_kst 6.838554e-02   p_cons 1.765060e-04   p_joint 6.180723e-04

Joint ci ratio: 1.219274e-01	ci left: 5.808424e-04	ci right 6.568349e-04	k: 1032	n:1670000
Cons ci ratio: 2.274412e-01	ci left: 1.576281e-04	ci right 1.986292e-04	k: 296	n:1670000
KS ci ratio: 1.119670e-02	ci left: 6.799490e-02	ci right 6.876109e-02	k: 114190	n:1670000
ARHGEF12   1670000 perm   1502 sec   (1112 perm/sec)   p_kst 6.837725e-02   p_cons 1.772455e-04   p_joint 6.179641e-04

Joint ci ratio: 1.215749e-01	ci left: 5.808477e-04	ci right 6.566053e-04	k: 1038	n:1680000
Cons ci ratio: 2.266792e-01	ci left: 1.578126e-04	ci right 1.987050e-04	k: 298	n:1680000
KS ci ratio: 1.116649e-02	ci left: 6.795996e-02	ci right 6.872367e-02	k: 114813	n:1680000
ARHGEF12   1680000 perm   1517 sec   (1107 perm/sec)   p_kst 6.834107e-02   p_cons 1.773810e-04   p_joint 6.178571e-04

Joint ci ratio: 1.212834e-01	ci left: 5.802794e-04	ci right 6.557685e-04	k: 1043	n:1690000
Cons ci ratio: 2.259249e-01	ci left: 1.579951e-04	ci right 1.987796e-04	k: 300	n:1690000
KS ci ratio: 1.113431e-02	ci left: 6.795081e-02	ci right 6.871221e-02	k: 115479	n:1690000
ARHGEF12   1690000 perm   1532 sec   (1103 perm/sec)   p_kst 6.833077e-02   p_cons 1.775148e-04   p_joint 6.171598e-04

Joint ci ratio: 1.208788e-01	ci left: 5.808589e-04	ci right 6.561533e-04	k: 1050	n:1700000
Cons ci ratio: 2.251780e-01	ci left: 1.581758e-04	ci right 1.988532e-04	k: 302	n:1700000
KS ci ratio: 1.110394e-02	ci left: 6.792417e-02	ci right 6.868318e-02	k: 116115	n:1700000
ARHGEF12   1700000 perm   1548 sec   (1098 perm/sec)   p_kst 6.830294e-02   p_cons 1.776471e-04   p_joint 6.176471e-04

Joint ci ratio: 1.232486e-01	ci left: 5.547840e-04	ci right 6.282111e-04	k: 1010	n:1710000
Cons ci ratio: 2.240714e-01	ci left: 1.589065e-04	ci right 1.995432e-04	k: 305	n:1710000
KS ci ratio: 1.107056e-02	ci left: 6.793518e-02	ci right 6.869202e-02	k: 116815	n:1710000
ARHGEF12   1710000 perm   1563 sec   (1094 perm/sec)   p_kst 6.831287e-02   p_cons 1.783626e-04   p_joint 5.906433e-04

Joint ci ratio: 1.216930e-01	ci left: 5.662119e-04	ci right 6.401376e-04	k: 1036	n:1720000
Cons ci ratio: 2.233427e-01	ci left: 1.590802e-04	ci right 1.996109e-04	k: 307	n:1720000
KS ci ratio: 1.106891e-02	ci left: 6.758594e-02	ci right 6.833877e-02	k: 116894	n:1720000
ARHGEF12   1720000 perm   1578 sec   (1090 perm/sec)   p_kst 6.796163e-02   p_cons 1.784884e-04   p_joint 6.023256e-04

Joint ci ratio: 1.225236e-01	ci left: 5.550935e-04	ci right 6.280980e-04	k: 1022	n:1730000
Cons ci ratio: 2.226210e-01	ci left: 1.592522e-04	ci right 1.996776e-04	k: 309	n:1730000
KS ci ratio: 1.103851e-02	ci left: 6.756822e-02	ci right 6.831878e-02	k: 117541	n:1730000
ARHGEF12   1730000 perm   1593 sec   (1086 perm/sec)   p_kst 6.794277e-02   p_cons 1.786127e-04   p_joint 5.907514e-04

Joint ci ratio: 1.221065e-01	ci left: 5.558032e-04	ci right 6.286343e-04	k: 1029	n:1740000
Cons ci ratio: 2.219063e-01	ci left: 1.594224e-04	ci right 1.997433e-04	k: 311	n:1740000
KS ci ratio: 1.100727e-02	ci left: 6.756332e-02	ci right 6.831168e-02	k: 118210	n:1740000
ARHGEF12   1740000 perm   1609 sec   (1082 perm/sec)   p_kst 6.793678e-02   p_cons 1.787356e-04   p_joint 5.913793e-04

Joint ci ratio: 1.017149e-01	ci left: 8.048591e-04	ci right 8.916636e-04	k: 1483	n:1750000
Cons ci ratio: 2.208470e-01	ci left: 1.601306e-04	ci right 2.004111e-04	k: 314	n:1750000
KS ci ratio: 1.103044e-02	ci left: 6.693949e-02	ci right 6.768251e-02	k: 117793	n:1750000
ARHGEF12   1750000 perm   1624 sec   (1077 perm/sec)   p_kst 6.731029e-02   p_cons 1.794286e-04   p_joint 8.474286e-04

Joint ci ratio: 1.013061e-01	ci left: 8.069312e-04	ci right 8.935885e-04	k: 1495	n:1760000
Cons ci ratio: 2.201492e-01	ci left: 1.602944e-04	ci right 2.004715e-04	k: 316	n:1760000
KS ci ratio: 1.099906e-02	ci left: 6.694049e-02	ci right 6.768139e-02	k: 118466	n:1760000
ARHGEF12   1760000 perm   1640 sec   (1073 perm/sec)   p_kst 6.731023e-02   p_cons 1.795455e-04   p_joint 8.494318e-04

Joint ci ratio: 1.010699e-01	ci left: 8.062270e-04	ci right 8.925948e-04	k: 1502	n:1770000
Cons ci ratio: 2.191148e-01	ci left: 1.609905e-04	ci right 2.011268e-04	k: 319	n:1770000
KS ci ratio: 1.096835e-02	ci left: 6.693696e-02	ci right 6.767575e-02	k: 119131	n:1770000
ARHGEF12   1770000 perm   1656 sec   (1069 perm/sec)   p_kst 6.730565e-02   p_cons 1.802260e-04   p_joint 8.485876e-04

Joint ci ratio: 1.007353e-01	ci left: 8.071738e-04	ci right 8.933399e-04	k: 1512	n:1780000
Cons ci ratio: 2.184332e-01	ci left: 1.611481e-04	ci right 2.011820e-04	k: 321	n:1780000
KS ci ratio: 1.093716e-02	ci left: 6.694189e-02	ci right 6.767862e-02	k: 119811	n:1780000
ARHGEF12   1780000 perm   1671 sec   (1065 perm/sec)   p_kst 6.730955e-02   p_cons 1.803371e-04   p_joint 8.494382e-04

Joint ci ratio: 1.019914e-01	ci left: 7.825176e-04	ci right 8.671556e-04	k: 1475	n:1790000
Cons ci ratio: 2.180949e-01	ci left: 1.607759e-04	ci right 2.006472e-04	k: 322	n:1790000
KS ci ratio: 1.090671e-02	ci left: 6.694119e-02	ci right 6.767585e-02	k: 120481	n:1790000
ARHGEF12   1790000 perm   1687 sec   (1061 perm/sec)   p_kst 6.730782e-02   p_cons 1.798883e-04   p_joint 8.240223e-04

Joint ci ratio: 1.017848e-01	ci left: 7.814186e-04	ci right 8.657563e-04	k: 1481	n:1800000
Cons ci ratio: 2.174228e-01	ci left: 1.609332e-04	ci right 2.007041e-04	k: 324	n:1800000
KS ci ratio: 1.087686e-02	ci left: 6.693663e-02	ci right 6.766921e-02	k: 121144	n:1800000
ARHGEF12   1800000 perm   1703 sec   (1057 perm/sec)   p_kst 6.730222e-02   p_cons 1.800000e-04   p_joint 8.227778e-04

Joint ci ratio: 1.015453e-01	ci left: 7.808704e-04	ci right 8.649389e-04	k: 1488	n:1810000
Cons ci ratio: 2.167569e-01	ci left: 1.610890e-04	ci right 2.007602e-04	k: 326	n:1810000
KS ci ratio: 1.084611e-02	ci left: 6.694534e-02	ci right 6.767593e-02	k: 121831	n:1810000
ARHGEF12   1810000 perm   1719 sec   (1053 perm/sec)   p_kst 6.730994e-02   p_cons 1.801105e-04   p_joint 8.220994e-04

Joint ci ratio: 1.012736e-01	ci left: 7.808641e-04	ci right 8.646935e-04	k: 1496	n:1820000
Cons ci ratio: 2.160970e-01	ci left: 1.612432e-04	ci right 2.008155e-04	k: 328	n:1820000
KS ci ratio: 1.081509e-02	ci left: 6.695999e-02	ci right 6.768864e-02	k: 122529	n:1820000
ARHGEF12   1820000 perm   1735 sec   (1049 perm/sec)   p_kst 6.732363e-02   p_cons 1.802198e-04   p_joint 8.219780e-04

Joint ci ratio: 1.010713e-01	ci left: 7.797928e-04	ci right 8.633300e-04	k: 1502	n:1830000
Cons ci ratio: 2.157694e-01	ci left: 1.608790e-04	ci right 2.002941e-04	k: 329	n:1830000
KS ci ratio: 1.078448e-02	ci left: 6.697285e-02	ci right 6.769956e-02	k: 123224	n:1830000
ARHGEF12   1830000 perm   1750 sec   (1045 perm/sec)   p_kst 6.733552e-02   p_cons 1.797814e-04   p_joint 8.207650e-04

Joint ci ratio: 1.026207e-01	ci left: 7.517206e-04	ci right 8.335595e-04	k: 1457	n:1840000
Cons ci ratio: 2.151185e-01	ci left: 1.610330e-04	ci right 2.003511e-04	k: 331	n:1840000
KS ci ratio: 1.075427e-02	ci left: 6.698394e-02	ci right 6.770873e-02	k: 123916	n:1840000
ARHGEF12   1840000 perm   1766 sec   (1042 perm/sec)   p_kst 6.734565e-02   p_cons 1.798913e-04   p_joint 7.918478e-04

Joint ci ratio: 1.023403e-01	ci left: 7.518707e-04	ci right 8.334888e-04	k: 1465	n:1850000
Cons ci ratio: 2.151186e-01	ci left: 1.601625e-04	ci right 1.992681e-04	k: 331	n:1850000
KS ci ratio: 1.072610e-02	ci left: 6.697389e-02	ci right 6.769666e-02	k: 124569	n:1850000
ARHGEF12   1850000 perm   1783 sec   (1038 perm/sec)   p_kst 6.733459e-02   p_cons 1.789189e-04   p_joint 7.918919e-04

Joint ci ratio: 1.024455e-01	ci left: 7.462567e-04	ci right 8.273537e-04	k: 1462	n:1860000
Cons ci ratio: 2.141531e-01	ci left: 1.608276e-04	ci right 1.998962e-04	k: 334	n:1860000
KS ci ratio: 1.069876e-02	ci left: 6.695697e-02	ci right 6.767771e-02	k: 125209	n:1860000
ARHGEF12   1860000 perm   1799 sec   (1034 perm/sec)   p_kst 6.731667e-02   p_cons 1.795699e-04   p_joint 7.860215e-04

Joint ci ratio: 1.021318e-01	ci left: 7.469557e-04	ci right 8.278652e-04	k: 1471	n:1870000
Cons ci ratio: 2.132006e-01	ci left: 1.614860e-04	ci right 2.005173e-04	k: 337	n:1870000
KS ci ratio: 1.066917e-02	ci left: 6.696905e-02	ci right 6.768791e-02	k: 125903	n:1870000
ARHGEF12   1870000 perm   1816 sec   (1030 perm/sec)   p_kst 6.732781e-02   p_cons 1.802139e-04   p_joint 7.866310e-04

Joint ci ratio: 1.019589e-01	ci left: 7.455742e-04	ci right 8.261891e-04	k: 1476	n:1880000
Cons ci ratio: 2.128859e-01	ci left: 1.611306e-04	ci right 2.000109e-04	k: 338	n:1880000
KS ci ratio: 1.063973e-02	ci left: 6.698206e-02	ci right 6.769906e-02	k: 126599	n:1880000
ARHGEF12   1880000 perm   1833 sec   (1026 perm/sec)   p_kst 6.733989e-02   p_cons 1.797872e-04   p_joint 7.851064e-04

Joint ci ratio: 1.022017e-01	ci left: 7.380201e-04	ci right 8.180197e-04	k: 1469	n:1890000
Cons ci ratio: 2.122607e-01	ci left: 1.612799e-04	ci right 2.000671e-04	k: 340	n:1890000
KS ci ratio: 1.060853e-02	ci left: 6.701869e-02	ci right 6.773396e-02	k: 127340	n:1890000
ARHGEF12   1890000 perm   1849 sec   (1022 perm/sec)   p_kst 6.737566e-02   p_cons 1.798942e-04   p_joint 7.772487e-04

Joint ci ratio: 1.018214e-01	ci left: 7.397776e-04	ci right 8.196514e-04	k: 1480	n:1900000
Cons ci ratio: 2.119502e-01	ci left: 1.609295e-04	ci right 1.995684e-04	k: 341	n:1900000
KS ci ratio: 1.058247e-02	ci left: 6.699718e-02	ci right 6.771046e-02	k: 127971	n:1900000
ARHGEF12   1900000 perm   1865 sec   (1019 perm/sec)   p_kst 6.735316e-02   p_cons 1.794737e-04   p_joint 7.789474e-04

Joint ci ratio: 1.015475e-01	ci left: 7.399864e-04	ci right 8.196550e-04	k: 1488	n:1910000
Cons ci ratio: 2.116410e-01	ci left: 1.605827e-04	ci right 1.990748e-04	k: 342	n:1910000
KS ci ratio: 1.055453e-02	ci left: 6.700044e-02	ci right 6.771186e-02	k: 128649	n:1910000
ARHGEF12   1910000 perm   1882 sec   (1015 perm/sec)   p_kst 6.735550e-02   p_cons 1.790576e-04   p_joint 7.790576e-04

Joint ci ratio: 1.012758e-01	ci left: 7.401933e-04	ci right 8.196583e-04	k: 1496	n:1920000
Cons ci ratio: 2.110267e-01	ci left: 1.607328e-04	ci right 1.991347e-04	k: 344	n:1920000
KS ci ratio: 1.052760e-02	ci left: 6.699433e-02	ci right 6.770385e-02	k: 129309	n:1920000
ARHGEF12   1920000 perm   1899 sec   (1011 perm/sec)   p_kst 6.734844e-02   p_cons 1.791667e-04   p_joint 7.791667e-04

Joint ci ratio: 1.008388e-01	ci left: 7.429236e-04	ci right 8.223172e-04	k: 1509	n:1930000
Cons ci ratio: 2.101151e-01	ci left: 1.613725e-04	ci right 1.997391e-04	k: 347	n:1930000
KS ci ratio: 1.049932e-02	ci left: 6.700688e-02	ci right 6.771462e-02	k: 130005	n:1930000
ARHGEF12   1930000 perm   1916 sec   (1007 perm/sec)   p_kst 6.736010e-02   p_cons 1.797927e-04   p_joint 7.818653e-04

Joint ci ratio: 1.007389e-01	ci left: 7.406015e-04	ci right 8.196639e-04	k: 1512	n:1940000
Cons ci ratio: 2.101152e-01	ci left: 1.605407e-04	ci right 1.987096e-04	k: 347	n:1940000
KS ci ratio: 1.047135e-02	ci left: 6.701828e-02	ci right 6.772425e-02	k: 130699	n:1940000
ARHGEF12   1940000 perm   1933 sec   (1004 perm/sec)   p_kst 6.737062e-02   p_cons 1.788660e-04   p_joint 7.793814e-04

Joint ci ratio: 1.005067e-01	ci left: 7.403030e-04	ci right 8.191405e-04	k: 1519	n:1950000
Cons ci ratio: 2.098140e-01	ci left: 1.602032e-04	ci right 1.982303e-04	k: 348	n:1950000
KS ci ratio: 1.044518e-02	ci left: 6.701064e-02	ci right 6.771475e-02	k: 131356	n:1950000
ARHGEF12   1950000 perm   1950 sec   (1000 perm/sec)   p_kst 6.736205e-02   p_cons 1.784615e-04   p_joint 7.789744e-04

Joint ci ratio: 1.001449e-01	ci left: 7.419974e-04	ci right 8.207142e-04	k: 1530	n:1960000
Cons ci ratio: 2.092153e-01	ci left: 1.603527e-04	ci right 1.982928e-04	k: 350	n:1960000
KS ci ratio: 1.041827e-02	ci left: 6.701427e-02	ci right 6.771660e-02	k: 132035	n:1960000
ARHGEF12   1960000 perm   1967 sec   (997 perm/sec)   p_kst 6.736480e-02   p_cons 1.785714e-04   p_joint 7.806122e-04

Joint ci ratio: 9.998181e-02	ci left: 7.407054e-04	ci right 8.191498e-04	k: 1535	n:1970000
Cons ci ratio: 2.092154e-01	ci left: 1.595388e-04	ci right 1.972862e-04	k: 350	n:1970000
KS ci ratio: 1.038918e-02	ci left: 6.704674e-02	ci right 6.774743e-02	k: 132771	n:1970000
ARHGEF12   1970000 perm   1984 sec   (993 perm/sec)   p_kst 6.739645e-02   p_cons 1.776650e-04   p_joint 7.791878e-04

Joint ci ratio: 1.000799e-01	ci left: 7.354871e-04	ci right 8.134597e-04	k: 1532	n:1980000
Cons ci ratio: 2.083270e-01	ci left: 1.601689e-04	ci right 1.978841e-04	k: 353	n:1980000
KS ci ratio: 1.036207e-02	ci left: 6.705771e-02	ci right 6.775668e-02	k: 133465	n:1980000
ARHGEF12   1980000 perm   2001 sec   (990 perm/sec)   p_kst 6.740657e-02   p_cons 1.782828e-04   p_joint 7.737374e-04

Joint ci ratio: 9.994964e-02	ci left: 7.337509e-04	ci right 8.114323e-04	k: 1536	n:1990000
Cons ci ratio: 2.083271e-01	ci left: 1.593641e-04	ci right 1.968897e-04	k: 353	n:1990000
KS ci ratio: 1.033551e-02	ci left: 6.706457e-02	ci right 6.776181e-02	k: 134151	n:1990000
ARHGEF12   1990000 perm   2018 sec   (986 perm/sec)   p_kst 6.741256e-02   p_cons 1.773869e-04   p_joint 7.718593e-04

Joint ci ratio: 9.965826e-02	ci left: 7.344699e-04	ci right 8.119874e-04	k: 1545	n:2000000
Cons ci ratio: 2.077410e-01	ci left: 1.595152e-04	ci right 1.969573e-04	k: 355	n:2000000
KS ci ratio: 1.031006e-02	ci left: 6.706039e-02	ci right 6.775586e-02	k: 134815	n:2000000
ARHGEF12   2000000 perm   2035 sec   (983 perm/sec)   p_kst 6.740750e-02   p_cons 1.775000e-04   p_joint 7.725000e-04

Joint ci ratio: 9.943342e-02	ci left: 7.342117e-04	ci right 8.115170e-04	k: 1552	n:2010000
Cons ci ratio: 2.074499e-01	ci left: 1.591932e-04	ci right 1.965007e-04	k: 356	n:2010000
KS ci ratio: 1.028349e-02	ci left: 6.707214e-02	ci right 6.776592e-02	k: 135511	n:2010000
ARHGEF12   2010000 perm   2053 sec   (979 perm/sec)   p_kst 6.741841e-02   p_cons 1.771144e-04   p_joint 7.721393e-04

Joint ci ratio: 9.905137e-02	ci left: 7.363702e-04	ci right 8.135875e-04	k: 1564	n:2020000
Cons ci ratio: 2.071600e-01	ci left: 1.588745e-04	ci right 1.960487e-04	k: 357	n:2020000
KS ci ratio: 1.025866e-02	ci left: 6.706500e-02	ci right 6.775703e-02	k: 136169	n:2020000
ARHGEF12   2020000 perm   2070 sec   (976 perm/sec)   p_kst 6.741040e-02   p_cons 1.767327e-04   p_joint 7.742574e-04

Joint ci ratio: 9.889359e-02	ci left: 7.351448e-04	ci right 8.121037e-04	k: 1569	n:2030000
Cons ci ratio: 2.071601e-01	ci left: 1.580918e-04	ci right 1.950829e-04	k: 357	n:2030000
KS ci ratio: 1.023292e-02	ci left: 6.707121e-02	ci right 6.776155e-02	k: 136854	n:2030000
ARHGEF12   2030000 perm   2087 sec   (973 perm/sec)   p_kst 6.741576e-02   p_cons 1.758621e-04   p_joint 7.729064e-04

Joint ci ratio: 9.867388e-02	ci left: 7.348877e-04	ci right 8.116389e-04	k: 1576	n:2040000
Cons ci ratio: 2.071602e-01	ci left: 1.573169e-04	ci right 1.941266e-04	k: 357	n:2040000
KS ci ratio: 1.020694e-02	ci left: 6.708274e-02	ci right 6.777143e-02	k: 137550	n:2040000
ARHGEF12   2040000 perm   2105 sec   (969 perm/sec)   p_kst 6.742647e-02   p_cons 1.750000e-04   p_joint 7.725490e-04

Joint ci ratio: 9.889396e-02	ci left: 7.279725e-04	ci right 8.041809e-04	k: 1569	n:2050000
Cons ci ratio: 2.071603e-01	ci left: 1.565495e-04	ci right 1.931797e-04	k: 357	n:2050000
KS ci ratio: 1.018127e-02	ci left: 6.709269e-02	ci right 6.777975e-02	k: 138243	n:2050000
ARHGEF12   2050000 perm   2122 sec   (966 perm/sec)   p_kst 6.743561e-02   p_cons 1.741463e-04   p_joint 7.653659e-04

Joint ci ratio: 9.867425e-02	ci left: 7.277528e-04	ci right 8.037591e-04	k: 1576	n:2060000
Cons ci ratio: 2.068716e-01	ci left: 1.562498e-04	ci right 1.927525e-04	k: 358	n:2060000
KS ci ratio: 1.015725e-02	ci left: 6.708463e-02	ci right 6.776998e-02	k: 138899	n:2060000
ARHGEF12   2060000 perm   2140 sec   (963 perm/sec)   p_kst 6.742670e-02   p_cons 1.737864e-04   p_joint 7.650485e-04

Joint ci ratio: 9.854943e-02	ci left: 7.261217e-04	ci right 8.018562e-04	k: 1580	n:2070000
Cons ci ratio: 2.068717e-01	ci left: 1.554949e-04	ci right 1.918213e-04	k: 358	n:2070000
KS ci ratio: 1.013523e-02	ci left: 6.705401e-02	ci right 6.773754e-02	k: 139508	n:2070000
ARHGEF12   2070000 perm   2158 sec   (959 perm/sec)   p_kst 6.739517e-02   p_cons 1.729469e-04   p_joint 7.632850e-04

Joint ci ratio: 9.867461e-02	ci left: 7.207550e-04	ci right 7.960308e-04	k: 1576	n:2080000
Cons ci ratio: 2.057286e-01	ci left: 1.565711e-04	ci right 1.929214e-04	k: 362	n:2080000
KS ci ratio: 1.011157e-02	ci left: 6.704574e-02	ci right 6.772759e-02	k: 140163	n:2080000
ARHGEF12   2080000 perm   2176 sec   (956 perm/sec)   p_kst 6.738606e-02   p_cons 1.740385e-04   p_joint 7.576923e-04

Joint ci ratio: 9.861223e-02	ci left: 7.182397e-04	ci right 7.932026e-04	k: 1578	n:2090000
Cons ci ratio: 2.051642e-01	ci left: 1.567297e-04	ci right 1.930044e-04	k: 364	n:2090000
KS ci ratio: 1.008819e-02	ci left: 6.703611e-02	ci right 6.771628e-02	k: 140815	n:2090000
ARHGEF12   2090000 perm   2194 sec   (953 perm/sec)   p_kst 6.737560e-02   p_cons 1.741627e-04   p_joint 7.550239e-04

Joint ci ratio: 9.839438e-02	ci left: 7.180707e-04	ci right 7.928409e-04	k: 1585	n:2100000
Cons ci ratio: 2.051643e-01	ci left: 1.559833e-04	ci right 1.920854e-04	k: 364	n:2100000
KS ci ratio: 1.006295e-02	ci left: 6.705177e-02	ci right 6.773038e-02	k: 141520	n:2100000
ARHGEF12   2100000 perm   2211 sec   (950 perm/sec)   p_kst 6.739048e-02   p_cons 1.733333e-04   p_joint 7.547619e-04

Joint ci ratio: 9.876920e-02	ci left: 7.091204e-04	ci right 7.832562e-04	k: 1573	n:2110000
Cons ci ratio: 2.043263e-01	ci left: 1.565930e-04	ci right 1.926696e-04	k: 367	n:2110000
KS ci ratio: 1.003896e-02	ci left: 6.705403e-02	ci right 6.773104e-02	k: 142197	n:2110000
ARHGEF12   2110000 perm   2229 sec   (946 perm/sec)   p_kst 6.739194e-02   p_cons 1.739336e-04   p_joint 7.454976e-04

Joint ci ratio: 9.914833e-02	ci left: 7.002551e-04	ci right 7.737613e-04	k: 1561	n:2120000
Cons ci ratio: 2.037733e-01	ci left: 1.567495e-04	ci right 1.927523e-04	k: 369	n:2120000
KS ci ratio: 1.001570e-02	ci left: 6.704922e-02	ci right 6.772460e-02	k: 142859	n:2120000
ARHGEF12   2120000 perm   2248 sec   (943 perm/sec)   p_kst 6.738632e-02   p_cons 1.740566e-04   p_joint 7.363208e-04

Joint ci ratio: 9.899008e-02	ci left: 6.992567e-04	ci right 7.725342e-04	k: 1566	n:2130000
Cons ci ratio: 2.037733e-01	ci left: 1.560136e-04	ci right 1.918474e-04	k: 369	n:2130000
KS ci ratio: 9.993690e-03	ci left: 6.703087e-02	ci right 6.770458e-02	k: 143492	n:2130000
ARHGEF12   2130000 perm   2267 sec   (940 perm/sec)   p_kst 6.736714e-02   p_cons 1.732394e-04   p_joint 7.352113e-04

Joint ci ratio: 9.886405e-02	ci left: 6.978120e-04	ci right 7.708397e-04	k: 1570	n:2140000
Cons ci ratio: 2.034986e-01	ci left: 1.557281e-04	ci right 1.914420e-04	k: 370	n:2140000
KS ci ratio: 9.970523e-03	ci left: 6.702901e-02	ci right 6.770113e-02	k: 144160	n:2140000
ARHGEF12   2140000 perm   2285 sec   (936 perm/sec)   p_kst 6.736449e-02   p_cons 1.728972e-04   p_joint 7.336449e-04

Joint ci ratio: 9.720645e-02	ci left: 7.190673e-04	ci right 7.929858e-04	k: 1624	n:2150000
Cons ci ratio: 2.141557e-01	ci left: 1.391344e-04	ci right 1.729337e-04	k: 334	n:2150000
KS ci ratio: 9.948622e-03	ci left: 6.701325e-02	ci right 6.768373e-02	k: 144798	n:2150000
ARHGEF12   2150000 perm   2303 sec   (933 perm/sec)   p_kst 6.734791e-02   p_cons 1.553488e-04   p_joint 7.553488e-04

Joint ci ratio: 9.705731e-02	ci left: 7.179969e-04	ci right 7.916856e-04	k: 1629	n:2160000
Cons ci ratio: 2.141558e-01	ci left: 1.384903e-04	ci right 1.721331e-04	k: 334	n:2160000
KS ci ratio: 9.926571e-03	ci left: 6.700133e-02	ci right 6.767020e-02	k: 145444	n:2160000
ARHGEF12   2160000 perm   2322 sec   (930 perm/sec)   p_kst 6.733519e-02   p_cons 1.546296e-04   p_joint 7.541667e-04

Joint ci ratio: 9.696822e-02	ci left: 7.160370e-04	ci right 7.894533e-04	k: 1632	n:2170000
Cons ci ratio: 2.141559e-01	ci left: 1.378521e-04	ci right 1.713399e-04	k: 334	n:2170000
KS ci ratio: 9.904412e-03	ci left: 6.699275e-02	ci right 6.766002e-02	k: 146097	n:2170000
ARHGEF12   2170000 perm   2341 sec   (927 perm/sec)   p_kst 6.732581e-02   p_cons 1.539171e-04   p_joint 7.520737e-04

Joint ci ratio: 9.673155e-02	ci left: 7.163333e-04	ci right 7.895906e-04	k: 1640	n:2180000
Cons ci ratio: 2.138370e-01	ci left: 1.376539e-04	ci right 1.710372e-04	k: 335	n:2180000
KS ci ratio: 9.882582e-03	ci left: 6.698195e-02	ci right 6.764764e-02	k: 146745	n:2180000
ARHGEF12   2180000 perm   2360 sec   (924 perm/sec)   p_kst 6.731422e-02   p_cons 1.536697e-04   p_joint 7.522936e-04

Joint ci ratio: 9.664335e-02	ci left: 7.143991e-04	ci right 7.873881e-04	k: 1643	n:2190000
Cons ci ratio: 2.138371e-01	ci left: 1.370253e-04	ci right 1.702562e-04	k: 335	n:2190000
KS ci ratio: 9.860931e-03	ci left: 6.697080e-02	ci right 6.763491e-02	k: 147392	n:2190000
ARHGEF12   2190000 perm   2379 sec   (920 perm/sec)   p_kst 6.730228e-02   p_cons 1.529680e-04   p_joint 7.502283e-04

Joint ci ratio: 9.652607e-02	ci left: 7.129260e-04	ci right 7.856712e-04	k: 1647	n:2200000
Cons ci ratio: 2.135196e-01	ci left: 1.368327e-04	ci right 1.699611e-04	k: 336	n:2200000
KS ci ratio: 9.837569e-03	ci left: 6.698333e-02	ci right 6.764599e-02	k: 148091	n:2200000
ARHGEF12   2200000 perm   2398 sec   (918 perm/sec)   p_kst 6.731409e-02   p_cons 1.527273e-04   p_joint 7.486364e-04

Joint ci ratio: 9.632173e-02	ci left: 7.127912e-04	ci right 7.853599e-04	k: 1654	n:2210000
Cons ci ratio: 2.135197e-01	ci left: 1.362135e-04	ci right 1.691921e-04	k: 336	n:2210000
KS ci ratio: 9.814549e-03	ci left: 6.699350e-02	ci right 6.765469e-02	k: 148785	n:2210000
ARHGEF12   2210000 perm   2417 sec   (915 perm/sec)   p_kst 6.732353e-02   p_cons 1.520362e-04   p_joint 7.484163e-04

Joint ci ratio: 9.600314e-02	ci left: 7.144162e-04	ci right 7.868963e-04	k: 1665	n:2220000
Cons ci ratio: 2.132036e-01	ci left: 1.360263e-04	ci right 1.689045e-04	k: 337	n:2220000
KS ci ratio: 9.790742e-03	ci left: 6.701571e-02	ci right 6.767551e-02	k: 149506	n:2220000
ARHGEF12   2220000 perm   2435 sec   (912 perm/sec)   p_kst 6.734505e-02   p_cons 1.518018e-04   p_joint 7.500000e-04

Joint ci ratio: 9.611885e-02	ci left: 7.094619e-04	ci right 7.815309e-04	k: 1661	n:2230000
Cons ci ratio: 2.132037e-01	ci left: 1.354163e-04	ci right 1.681470e-04	k: 337	n:2230000
KS ci ratio: 9.768223e-03	ci left: 6.702341e-02	ci right 6.768175e-02	k: 150195	n:2230000
ARHGEF12   2230000 perm   2454 sec   (909 perm/sec)   p_kst 6.735202e-02   p_cons 1.511211e-04   p_joint 7.448430e-04

Joint ci ratio: 9.594585e-02	ci left: 7.089088e-04	ci right 7.807849e-04	k: 1667	n:2240000
Cons ci ratio: 2.128890e-01	ci left: 1.352344e-04	ci right 1.678666e-04	k: 338	n:2240000
KS ci ratio: 9.747210e-03	ci left: 6.701366e-02	ci right 6.767049e-02	k: 150845	n:2240000
ARHGEF12   2240000 perm   2473 sec   (906 perm/sec)   p_kst 6.734152e-02   p_cons 1.508929e-04   p_joint 7.441964e-04

Joint ci ratio: 9.574516e-02	ci left: 7.087947e-04	ci right 7.805004e-04	k: 1674	n:2250000
Cons ci ratio: 2.125757e-01	ci left: 1.350541e-04	ci right 1.675886e-04	k: 339	n:2250000
KS ci ratio: 9.725471e-03	ci left: 6.701509e-02	ci right 6.767046e-02	k: 151520	n:2250000
ARHGEF12   2250000 perm   2492 sec   (903 perm/sec)   p_kst 6.734222e-02   p_cons 1.506667e-04   p_joint 7.440000e-04

Joint ci ratio: 9.568817e-02	ci left: 7.065221e-04	ci right 7.779530e-04	k: 1676	n:2260000
Cons ci ratio: 2.122638e-01	ci left: 1.348755e-04	ci right 1.673131e-04	k: 340	n:2260000
KS ci ratio: 9.705176e-03	ci left: 6.699974e-02	ci right 6.765358e-02	k: 152157	n:2260000
ARHGEF12   2260000 perm   2511 sec   (900 perm/sec)   p_kst 6.732611e-02   p_cons 1.504425e-04   p_joint 7.415929e-04

Joint ci ratio: 9.246150e-02	ci left: 7.546005e-04	ci right 8.281805e-04	k: 1795	n:2270000
Cons ci ratio: 2.116441e-01	ci left: 1.351156e-04	ci right 1.675038e-04	k: 342	n:2270000
KS ci ratio: 9.685041e-03	ci left: 6.698408e-02	ci right 6.763641e-02	k: 152793	n:2270000
ARHGEF12   2270000 perm   2529 sec   (897 perm/sec)   p_kst 6.730969e-02   p_cons 1.506608e-04   p_joint 7.907489e-04

Joint ci ratio: 9.243591e-02	ci left: 7.517192e-04	ci right 8.249969e-04	k: 1796	n:2280000
Cons ci ratio: 2.116441e-01	ci left: 1.345230e-04	ci right 1.667691e-04	k: 342	n:2280000
KS ci ratio: 9.664660e-03	ci left: 6.697337e-02	ci right 6.762422e-02	k: 153440	n:2280000
ARHGEF12   2280000 perm   2548 sec   (895 perm/sec)   p_kst 6.729825e-02   p_cons 1.500000e-04   p_joint 7.877193e-04

Joint ci ratio: 9.316531e-02	ci left: 7.364930e-04	ci right 8.088838e-04	k: 1768	n:2290000
Cons ci ratio: 2.113363e-01	ci left: 1.343491e-04	ci right 1.665006e-04	k: 343	n:2290000
KS ci ratio: 9.643199e-03	ci left: 6.697845e-02	ci right 6.762789e-02	k: 154123	n:2290000
ARHGEF12   2290000 perm   2568 sec   (892 perm/sec)   p_kst 6.730262e-02   p_cons 1.497817e-04   p_joint 7.720524e-04

Joint ci ratio: 9.285083e-02	ci left: 7.383870e-04	ci right 8.107056e-04	k: 1780	n:2300000
Cons ci ratio: 2.113364e-01	ci left: 1.337650e-04	ci right 1.657767e-04	k: 343	n:2300000
KS ci ratio: 9.620448e-03	ci left: 6.700213e-02	ci right 6.765026e-02	k: 154849	n:2300000
ARHGEF12   2300000 perm   2587 sec   (889 perm/sec)   p_kst 6.732565e-02   p_cons 1.491304e-04   p_joint 7.739130e-04

Joint ci ratio: 9.272083e-02	ci left: 7.373047e-04	ci right 8.094108e-04	k: 1785	n:2310000
Cons ci ratio: 2.113365e-01	ci left: 1.331859e-04	ci right 1.650591e-04	k: 343	n:2310000
KS ci ratio: 9.600140e-03	ci left: 6.699581e-02	ci right 6.764250e-02	k: 155506	n:2310000
ARHGEF12   2310000 perm   2607 sec   (886 perm/sec)   p_kst 6.731861e-02   p_cons 1.484848e-04   p_joint 7.727273e-04

Joint ci ratio: 9.259136e-02	ci left: 7.362319e-04	ci right 8.081271e-04	k: 1790	n:2320000
Cons ci ratio: 2.110300e-01	ci left: 1.330201e-04	ci right 1.648014e-04	k: 344	n:2320000
KS ci ratio: 9.578316e-03	ci left: 6.701105e-02	ci right 6.765641e-02	k: 156213	n:2320000
ARHGEF12   2320000 perm   2627 sec   (883 perm/sec)   p_kst 6.733319e-02   p_cons 1.482759e-04   p_joint 7.715517e-04

Joint ci ratio: 9.238526e-02	ci left: 7.364262e-04	ci right 8.081716e-04	k: 1798	n:2330000
Cons ci ratio: 2.101183e-01	ci left: 1.336688e-04	ci right 1.654494e-04	k: 347	n:2330000
KS ci ratio: 9.559155e-03	ci left: 6.699318e-02	ci right 6.763708e-02	k: 156843	n:2330000
ARHGEF12   2330000 perm   2647 sec   (880 perm/sec)   p_kst 6.731459e-02   p_cons 1.489270e-04   p_joint 7.716738e-04

Joint ci ratio: 9.243684e-02	ci left: 7.324441e-04	ci right 8.038435e-04	k: 1796	n:2340000
Cons ci ratio: 2.098171e-01	ci left: 1.335025e-04	ci right 1.651922e-04	k: 348	n:2340000
KS ci ratio: 9.539038e-03	ci left: 6.698955e-02	ci right 6.763204e-02	k: 157506	n:2340000
ARHGEF12   2340000 perm   2667 sec   (877 perm/sec)   p_kst 6.731026e-02   p_cons 1.487179e-04   p_joint 7.675214e-04

Joint ci ratio: 9.225734e-02	ci left: 7.322372e-04	ci right 8.034704e-04	k: 1803	n:2350000
Cons ci ratio: 2.092185e-01	ci left: 1.337408e-04	ci right 1.653849e-04	k: 350	n:2350000
KS ci ratio: 9.519240e-03	ci left: 6.698339e-02	ci right 6.762448e-02	k: 158163	n:2350000
ARHGEF12   2350000 perm   2687 sec   (875 perm/sec)   p_kst 6.730340e-02   p_cons 1.489362e-04   p_joint 7.672340e-04

Joint ci ratio: 9.236002e-02	ci left: 7.274786e-04	ci right 7.983319e-04	k: 1799	n:2360000
Cons ci ratio: 2.086249e-01	ci left: 1.339772e-04	ci right 1.655758e-04	k: 352	n:2360000
KS ci ratio: 9.497481e-03	ci left: 6.700477e-02	ci right 6.764460e-02	k: 158885	n:2360000
ARHGEF12   2360000 perm   2707 sec   (872 perm/sec)   p_kst 6.732415e-02   p_cons 1.491525e-04   p_joint 7.622881e-04

Joint ci ratio: 9.202819e-02	ci left: 7.297679e-04	ci right 8.005750e-04	k: 1812	n:2370000
Cons ci ratio: 2.080364e-01	ci left: 1.342118e-04	ci right 1.657651e-04	k: 354	n:2370000
KS ci ratio: 9.475585e-03	ci left: 6.702976e-02	ci right 6.766834e-02	k: 159616	n:2370000
ARHGEF12   2370000 perm   2728 sec   (869 perm/sec)   p_kst 6.734852e-02   p_cons 1.493671e-04   p_joint 7.645570e-04

Joint ci ratio: 9.180059e-02	ci left: 7.303963e-04	ci right 8.010797e-04	k: 1821	n:2380000
Cons ci ratio: 2.077440e-01	ci left: 1.340462e-04	ci right 1.655106e-04	k: 355	n:2380000
KS ci ratio: 9.455103e-03	ci left: 6.703778e-02	ci right 6.767504e-02	k: 160307	n:2380000
ARHGEF12   2380000 perm   2748 sec   (866 perm/sec)   p_kst 6.735588e-02   p_cons 1.491597e-04   p_joint 7.651261e-04

Joint ci ratio: 9.180074e-02	ci left: 7.273402e-04	ci right 7.977279e-04	k: 1821	n:2390000
Cons ci ratio: 2.077441e-01	ci left: 1.334853e-04	ci right 1.648181e-04	k: 355	n:2390000
KS ci ratio: 9.435665e-03	ci left: 6.703361e-02	ci right 6.766953e-02	k: 160969	n:2390000
ARHGEF12   2390000 perm   2769 sec   (863 perm/sec)   p_kst 6.735105e-02   p_cons 1.485356e-04   p_joint 7.619247e-04

Joint ci ratio: 9.162491e-02	ci left: 7.271593e-04	ci right 7.973876e-04	k: 1828	n:2400000
Cons ci ratio: 2.068742e-01	ci left: 1.341142e-04	ci right 1.654461e-04	k: 358	n:2400000
KS ci ratio: 9.415035e-03	ci left: 6.704695e-02	ci right 6.768159e-02	k: 161673	n:2400000
ARHGEF12   2400000 perm   2790 sec   (860 perm/sec)   p_kst 6.736375e-02   p_cons 1.491667e-04   p_joint 7.616667e-04

Joint ci ratio: 9.147503e-02	ci left: 7.265747e-04	ci right 7.966256e-04	k: 1834	n:2410000
Cons ci ratio: 2.065867e-01	ci left: 1.339512e-04	ci right 1.651960e-04	k: 359	n:2410000
KS ci ratio: 9.396122e-03	ci left: 6.703907e-02	ci right 6.767235e-02	k: 162326	n:2410000
ARHGEF12   2410000 perm   2811 sec   (857 perm/sec)   p_kst 6.735519e-02   p_cons 1.489627e-04   p_joint 7.609959e-04

Joint ci ratio: 9.147517e-02	ci left: 7.235723e-04	ci right 7.933338e-04	k: 1834	n:2420000
Cons ci ratio: 2.063004e-01	ci left: 1.337895e-04	ci right 1.649479e-04	k: 360	n:2420000
KS ci ratio: 9.376551e-03	ci left: 6.704155e-02	ci right 6.767353e-02	k: 163004	n:2420000
ARHGEF12   2420000 perm   2832 sec   (854 perm/sec)   p_kst 6.735702e-02   p_cons 1.487603e-04   p_joint 7.578512e-04

Joint ci ratio: 9.112808e-02	ci left: 7.262244e-04	ci right 7.959618e-04	k: 1848	n:2430000
Cons ci ratio: 2.057312e-01	ci left: 1.340196e-04	ci right 1.651346e-04	k: 362	n:2430000
KS ci ratio: 9.355081e-03	ci left: 6.707112e-02	ci right 6.770193e-02	k: 163748	n:2430000
ARHGEF12   2430000 perm   2853 sec   (852 perm/sec)   p_kst 6.738601e-02   p_cons 1.489712e-04   p_joint 7.604938e-04

Joint ci ratio: 9.107894e-02	ci left: 7.240491e-04	ci right 7.935381e-04	k: 1850	n:2440000
Cons ci ratio: 2.048863e-01	ci left: 1.346366e-04	ci right 1.657504e-04	k: 365	n:2440000
KS ci ratio: 9.337165e-03	ci left: 6.705465e-02	ci right 6.768408e-02	k: 164380	n:2440000
ARHGEF12   2440000 perm   2874 sec   (849 perm/sec)   p_kst 6.736885e-02   p_cons 1.495902e-04   p_joint 7.581967e-04

Joint ci ratio: 9.093171e-02	ci left: 7.234870e-04	ci right 7.928039e-04	k: 1856	n:2450000
Cons ci ratio: 2.043287e-01	ci left: 1.348616e-04	ci right 1.659320e-04	k: 367	n:2450000
KS ci ratio: 9.318868e-03	ci left: 6.704483e-02	ci right 6.767293e-02	k: 165028	n:2450000
ARHGEF12   2450000 perm   2896 sec   (846 perm/sec)   p_kst 6.735837e-02   p_cons 1.497959e-04   p_joint 7.575510e-04

Joint ci ratio: 9.080959e-02	ci left: 7.225323e-04	ci right 7.916598e-04	k: 1861	n:2460000
Cons ci ratio: 2.043288e-01	ci left: 1.343133e-04	ci right 1.652575e-04	k: 367	n:2460000
KS ci ratio: 9.299173e-03	ci left: 6.705537e-02	ci right 6.768224e-02	k: 165726	n:2460000
ARHGEF12   2460000 perm   2917 sec   (843 perm/sec)   p_kst 6.736829e-02   p_cons 1.491870e-04   p_joint 7.565041e-04

Joint ci ratio: 9.051830e-02	ci left: 7.243552e-04	ci right 7.934231e-04	k: 1873	n:2470000
Cons ci ratio: 2.037758e-01	ci left: 1.345379e-04	ci right 1.654394e-04	k: 369	n:2470000
KS ci ratio: 9.279813e-03	ci left: 6.706300e-02	ci right 6.768862e-02	k: 166417	n:2470000
ARHGEF12   2470000 perm   2939 sec   (841 perm/sec)   p_kst 6.737530e-02   p_cons 1.493927e-04   p_joint 7.582996e-04

Joint ci ratio: 9.030169e-02	ci left: 7.249814e-04	ci right 7.939348e-04	k: 1882	n:2480000
Cons ci ratio: 2.035010e-01	ci left: 1.343781e-04	ci right 1.651961e-04	k: 370	n:2480000
KS ci ratio: 9.260988e-03	ci left: 6.706493e-02	ci right 6.768930e-02	k: 167094	n:2480000
ARHGEF12   2480000 perm   2960 sec   (838 perm/sec)   p_kst 6.737661e-02   p_cons 1.491935e-04   p_joint 7.588710e-04

Joint ci ratio: 9.015819e-02	ci left: 7.244251e-04	ci right 7.932104e-04	k: 1888	n:2490000
Cons ci ratio: 2.035011e-01	ci left: 1.338384e-04	ci right 1.645327e-04	k: 370	n:2490000
KS ci ratio: 9.243341e-03	ci left: 6.705243e-02	ci right 6.767549e-02	k: 167735	n:2490000
ARHGEF12   2490000 perm   2981 sec   (835 perm/sec)   p_kst 6.736345e-02   p_cons 1.485944e-04   p_joint 7.582329e-04

Joint ci ratio: 9.023006e-02	ci left: 7.203544e-04	ci right 7.888105e-04	k: 1885	n:2500000
Cons ci ratio: 2.026832e-01	ci left: 1.344420e-04	ci right 1.651355e-04	k: 373	n:2500000
KS ci ratio: 9.225178e-03	ci left: 6.704841e-02	ci right 6.767020e-02	k: 168397	n:2500000
ARHGEF12   2500000 perm   3004 sec   (832 perm/sec)   p_kst 6.735880e-02   p_cons 1.492000e-04   p_joint 7.540000e-04

Joint ci ratio: 9.011074e-02	ci left: 7.194316e-04	ci right 7.877048e-04	k: 1890	n:2510000
Cons ci ratio: 2.024128e-01	ci left: 1.342846e-04	ci right 1.648962e-04	k: 374	n:2510000
KS ci ratio: 9.207208e-03	ci left: 6.704323e-02	ci right 6.766375e-02	k: 169056	n:2510000
ARHGEF12   2510000 perm   3026 sec   (830 perm/sec)   p_kst 6.735299e-02   p_cons 1.490040e-04   p_joint 7.529880e-04

Joint ci ratio: 8.987338e-02	ci left: 7.204557e-04	ci right 7.886365e-04	k: 1900	n:2520000
Cons ci ratio: 2.018751e-01	ci left: 1.345052e-04	ci right 1.650756e-04	k: 376	n:2520000
KS ci ratio: 9.188792e-03	ci left: 6.704561e-02	ci right 6.766491e-02	k: 169734	n:2520000
ARHGEF12   2520000 perm   3048 sec   (827 perm/sec)   p_kst 6.735476e-02   p_cons 1.492063e-04   p_joint 7.539683e-04

Joint ci ratio: 8.970837e-02	ci left: 7.203127e-04	ci right 7.883483e-04	k: 1907	n:2530000
Cons ci ratio: 2.018752e-01	ci left: 1.339736e-04	ci right 1.644231e-04	k: 376	n:2530000
KS ci ratio: 9.170977e-03	ci left: 6.704127e-02	ci right 6.765932e-02	k: 170395	n:2530000
ARHGEF12   2530000 perm   3070 sec   (824 perm/sec)   p_kst 6.734980e-02   p_cons 1.486166e-04   p_joint 7.537549e-04

Joint ci ratio: 8.987364e-02	ci left: 7.147827e-04	ci right 7.824269e-04	k: 1900	n:2540000
Cons ci ratio: 2.010767e-01	ci left: 1.345676e-04	ci right 1.650164e-04	k: 379	n:2540000
KS ci ratio: 9.152892e-03	ci left: 6.704208e-02	ci right 6.765891e-02	k: 171069	n:2540000
ARHGEF12   2540000 perm   3092 sec   (822 perm/sec)   p_kst 6.735000e-02   p_cons 1.492126e-04   p_joint 7.480315e-04

Joint ci ratio: 8.968512e-02	ci left: 7.150465e-04	ci right 7.825662e-04	k: 1908	n:2550000
Cons ci ratio: 2.008126e-01	ci left: 1.344124e-04	ci right 1.647811e-04	k: 380	n:2550000
KS ci ratio: 9.135569e-03	ci left: 6.703388e-02	ci right 6.764946e-02	k: 171720	n:2550000
ARHGEF12   2550000 perm   3113 sec   (819 perm/sec)   p_kst 6.734118e-02   p_cons 1.490196e-04   p_joint 7.482353e-04

Joint ci ratio: 8.954454e-02	ci left: 7.145445e-04	ci right 7.819056e-04	k: 1914	n:2560000
Cons ci ratio: 2.008127e-01	ci left: 1.338873e-04	ci right 1.641374e-04	k: 380	n:2560000
KS ci ratio: 9.116105e-03	ci left: 6.705653e-02	ci right 6.767101e-02	k: 172450	n:2560000
ARHGEF12   2560000 perm   3135 sec   (816 perm/sec)   p_kst 6.736328e-02   p_cons 1.484375e-04   p_joint 7.476562e-04

Joint ci ratio: 8.933483e-02	ci left: 7.151878e-04	ci right 7.824434e-04	k: 1923	n:2570000
Cons ci ratio: 2.002877e-01	ci left: 1.341055e-04	ci right 1.643160e-04	k: 382	n:2570000
KS ci ratio: 9.096708e-03	ci left: 6.707979e-02	ci right 6.769317e-02	k: 173182	n:2570000
ARHGEF12   2570000 perm   3158 sec   (814 perm/sec)   p_kst 6.738599e-02   p_cons 1.486381e-04   p_joint 7.482490e-04

Joint ci ratio: 8.924217e-02	ci left: 7.139315e-04	ci right 7.809957e-04	k: 1927	n:2580000
Cons ci ratio: 2.000267e-01	ci left: 1.339539e-04	ci right 1.640861e-04	k: 383	n:2580000
KS ci ratio: 9.079142e-03	ci left: 6.707928e-02	ci right 6.769146e-02	k: 173853	n:2580000
ARHGEF12   2580000 perm   3180 sec   (811 perm/sec)   p_kst 6.738488e-02   p_cons 1.484496e-04   p_joint 7.468992e-04

Joint ci ratio: 8.917290e-02	ci left: 7.123075e-04	ci right 7.791644e-04	k: 1930	n:2590000
Cons ci ratio: 2.000268e-01	ci left: 1.334367e-04	ci right 1.634526e-04	k: 383	n:2590000
KS ci ratio: 9.062790e-03	ci left: 6.706336e-02	ci right 6.767428e-02	k: 174484	n:2590000
ARHGEF12   2590000 perm   3202 sec   (809 perm/sec)   p_kst 6.736834e-02   p_cons 1.478764e-04   p_joint 7.451737e-04

Joint ci ratio: 8.959188e-02	ci left: 7.027993e-04	ci right 7.690900e-04	k: 1912	n:2600000
Cons ci ratio: 2.000269e-01	ci left: 1.329234e-04	ci right 1.628239e-04	k: 383	n:2600000
KS ci ratio: 9.043897e-03	ci left: 6.708403e-02	ci right 6.769386e-02	k: 175210	n:2600000
ARHGEF12   2600000 perm   3224 sec   (806 perm/sec)   p_kst 6.738846e-02   p_cons 1.473077e-04   p_joint 7.353846e-04

Joint ci ratio: 8.468363e-02	ci left: 7.855623e-04	ci right 8.553997e-04	k: 2140	n:2610000
Cons ci ratio: 1.584380e-01	ci left: 2.159049e-04	ci right 2.534178e-04	k: 611	n:2610000
KS ci ratio: 9.027295e-03	ci left: 6.707433e-02	ci right 6.768295e-02	k: 175857	n:2610000
ARHGEF12   2610000 perm   3247 sec   (804 perm/sec)   p_kst 6.737816e-02   p_cons 2.340996e-04   p_joint 8.199234e-04

Joint ci ratio: 8.448652e-02	ci left: 7.863000e-04	ci right 8.560323e-04	k: 2150	n:2620000
Cons ci ratio: 1.581798e-01	ci left: 2.158140e-04	ci right 2.532442e-04	k: 613	n:2620000
KS ci ratio: 9.010538e-03	ci left: 6.706814e-02	ci right 6.767556e-02	k: 176513	n:2620000
ARHGEF12   2620000 perm   3270 sec   (801 perm/sec)   p_kst 6.737137e-02   p_cons 2.339695e-04   p_joint 8.206107e-04

Joint ci ratio: 8.431031e-02	ci left: 7.866601e-04	ci right 8.562717e-04	k: 2159	n:2630000
Cons ci ratio: 1.577947e-01	ci left: 2.160890e-04	ci right 2.534670e-04	k: 616	n:2630000
KS ci ratio: 8.992567e-03	ci left: 6.708021e-02	ci right 6.768652e-02	k: 177217	n:2630000
ARHGEF12   2630000 perm   3292 sec   (799 perm/sec)   p_kst 6.738289e-02   p_cons 2.342205e-04   p_joint 8.209125e-04

Joint ci ratio: 8.409640e-02	ci left: 7.877593e-04	ci right 8.572826e-04	k: 2170	n:2640000
Cons ci ratio: 1.571591e-01	ci left: 2.170898e-04	ci right 2.544754e-04	k: 621	n:2640000
KS ci ratio: 8.975704e-03	ci left: 6.707820e-02	ci right 6.768336e-02	k: 177884	n:2640000
ARHGEF12   2640000 perm   3314 sec   (797 perm/sec)   p_kst 6.738030e-02   p_cons 2.352273e-04   p_joint 8.219697e-04

Joint ci ratio: 8.510288e-02	ci left: 7.659481e-04	ci right 8.343956e-04	k: 2119	n:2650000
Cons ci ratio: 1.565312e-01	ci left: 2.180833e-04	ci right 2.554759e-04	k: 626	n:2650000
KS ci ratio: 8.958533e-03	ci left: 6.708186e-02	ci right 6.768588e-02	k: 178566	n:2650000
ARHGEF12   2650000 perm   3336 sec   (794 perm/sec)   p_kst 6.738340e-02   p_cons 2.362264e-04   p_joint 7.996226e-04

Joint ci ratio: 8.500275e-02	ci left: 7.649083e-04	ci right 8.331785e-04	k: 2124	n:2660000
Cons ci ratio: 1.561580e-01	ci left: 2.183471e-04	ci right 2.556874e-04	k: 629	n:2660000
KS ci ratio: 8.941272e-03	ci left: 6.708811e-02	ci right 6.769102e-02	k: 179255	n:2660000
ARHGEF12   2660000 perm   3359 sec   (792 perm/sec)   p_kst 6.738910e-02   p_cons 2.364662e-04   p_joint 7.984962e-04

Joint ci ratio: 8.482330e-02	ci left: 7.653427e-04	ci right 8.335003e-04	k: 2133	n:2670000
Cons ci ratio: 1.560343e-01	ci left: 2.178893e-04	ci right 2.551189e-04	k: 630	n:2670000
KS ci ratio: 8.926079e-03	ci left: 6.706667e-02	ci right 6.766836e-02	k: 179870	n:2670000
ARHGEF12   2670000 perm   3382 sec   (789 perm/sec)   p_kst 6.736704e-02   p_cons 2.359551e-04   p_joint 7.988764e-04

Joint ci ratio: 8.512336e-02	ci left: 7.570087e-04	ci right 8.246745e-04	k: 2118	n:2680000
Cons ci ratio: 1.557876e-01	ci left: 2.177934e-04	ci right 2.549423e-04	k: 632	n:2680000
KS ci ratio: 8.909322e-03	ci left: 6.706847e-02	ci right 6.766904e-02	k: 180547	n:2680000
ARHGEF12   2680000 perm   3405 sec   (787 perm/sec)   p_kst 6.736828e-02   p_cons 2.358209e-04   p_joint 7.902985e-04

Joint ci ratio: 9.552302e-02	ci left: 5.957592e-04	ci right 6.558819e-04	k: 1682	n:2690000
Cons ci ratio: 1.551759e-01	ci left: 2.187702e-04	ci right 2.559255e-04	k: 637	n:2690000
KS ci ratio: 8.506919e-03	ci left: 7.284969e-02	ci right 7.347242e-02	k: 196802	n:2690000
ARHGEF12   2690000 perm   3427 sec   (785 perm/sec)   p_kst 7.316059e-02   p_cons 2.368030e-04   p_joint 6.252788e-04

Joint ci ratio: 9.540974e-02	ci left: 5.949988e-04	ci right 6.549695e-04	k: 1686	n:2700000
Cons ci ratio: 1.546916e-01	ci left: 2.193840e-04	ci right 2.565165e-04	k: 641	n:2700000
KS ci ratio: 8.491258e-03	ci left: 7.284856e-02	ci right 7.347013e-02	k: 197529	n:2700000
ARHGEF12   2700000 perm   3450 sec   (783 perm/sec)   p_kst 7.315889e-02   p_cons 2.374074e-04   p_joint 6.244444e-04

Joint ci ratio: 9.507211e-02	ci left: 5.971258e-04	ci right 6.570861e-04	k: 1698	n:2710000
Cons ci ratio: 1.542119e-01	ci left: 2.199934e-04	ci right 2.571030e-04	k: 645	n:2710000
KS ci ratio: 8.476559e-03	ci left: 7.283345e-02	ci right 7.345381e-02	k: 198218	n:2710000
ARHGEF12   2710000 perm   3473 sec   (780 perm/sec)   p_kst 7.314317e-02   p_cons 2.380074e-04   p_joint 6.265683e-04

Joint ci ratio: 9.487685e-02	ci left: 5.974429e-04	ci right 6.573050e-04	k: 1705	n:2720000
Cons ci ratio: 1.539738e-01	ci left: 2.198916e-04	ci right 2.569214e-04	k: 647	n:2720000
KS ci ratio: 8.461271e-03	ci left: 7.282909e-02	ci right 7.344829e-02	k: 198936	n:2720000
ARHGEF12   2720000 perm   3497 sec   (778 perm/sec)   p_kst 7.313824e-02   p_cons 2.378676e-04   p_joint 6.268382e-04

Joint ci ratio: 9.479359e-02	ci left: 5.963273e-04	ci right 6.560223e-04	k: 1708	n:2730000
Cons ci ratio: 1.535007e-01	ci left: 2.204949e-04	ci right 2.575018e-04	k: 651	n:2730000
KS ci ratio: 8.446339e-03	ci left: 7.282038e-02	ci right 7.343840e-02	k: 199642	n:2730000
ARHGEF12   2730000 perm   3520 sec   (776 perm/sec)   p_kst 7.312894e-02   p_cons 2.384615e-04   p_joint 6.256410e-04

Joint ci ratio: 9.468289e-02	ci left: 5.955762e-04	ci right 6.551225e-04	k: 1712	n:2740000
Cons ci ratio: 1.531487e-01	ci left: 2.207431e-04	ci right 2.576989e-04	k: 654	n:2740000
KS ci ratio: 8.431237e-03	ci left: 7.281573e-02	ci right 7.343261e-02	k: 200359	n:2740000
ARHGEF12   2740000 perm   3543 sec   (773 perm/sec)   p_kst 7.312372e-02   p_cons 2.386861e-04   p_joint 6.248175e-04

Joint ci ratio: 9.449001e-02	ci left: 5.958957e-04	ci right 6.553458e-04	k: 1719	n:2750000
Cons ci ratio: 1.530320e-01	ci left: 2.202901e-04	ci right 2.571393e-04	k: 655	n:2750000
KS ci ratio: 8.415583e-03	ci left: 7.282129e-02	ci right 7.343706e-02	k: 201104	n:2750000
ARHGEF12   2750000 perm   3567 sec   (771 perm/sec)   p_kst 7.312873e-02   p_cons 2.381818e-04   p_joint 6.250909e-04

Joint ci ratio: 9.440777e-02	ci left: 5.947979e-04	ci right 6.540840e-04	k: 1722	n:2760000
Cons ci ratio: 1.527993e-01	ci left: 2.201889e-04	ci right 2.569600e-04	k: 657	n:2760000
KS ci ratio: 8.401273e-03	ci left: 7.280655e-02	ci right 7.342115e-02	k: 201793	n:2760000
ARHGEF12   2760000 perm   3590 sec   (769 perm/sec)   p_kst 7.311341e-02   p_cons 2.380435e-04   p_joint 6.239130e-04

Joint ci ratio: 9.416212e-02	ci left: 5.958231e-04	ci right 6.550484e-04	k: 1731	n:2770000
Cons ci ratio: 1.525676e-01	ci left: 2.200884e-04	ci right 2.567820e-04	k: 659	n:2770000
KS ci ratio: 8.386366e-03	ci left: 7.280274e-02	ci right 7.341621e-02	k: 202512	n:2770000
ARHGEF12   2770000 perm   3614 sec   (766 perm/sec)   p_kst 7.310903e-02   p_cons 2.379061e-04   p_joint 6.249097e-04

Joint ci ratio: 9.397240e-02	ci left: 5.961386e-04	ci right 6.552693e-04	k: 1738	n:2780000
Cons ci ratio: 1.523370e-01	ci left: 2.199887e-04	ci right 2.566051e-04	k: 661	n:2780000
KS ci ratio: 8.371004e-03	ci left: 7.280756e-02	ci right 7.341995e-02	k: 203255	n:2780000
ARHGEF12   2780000 perm   3637 sec   (764 perm/sec)   p_kst 7.311331e-02   p_cons 2.377698e-04   p_joint 6.251799e-04

Joint ci ratio: 9.375696e-02	ci left: 5.968020e-04	ci right 6.558553e-04	k: 1746	n:2790000
Cons ci ratio: 1.522221e-01	ci left: 2.195450e-04	ci right 2.560575e-04	k: 662	n:2790000
KS ci ratio: 8.355638e-03	ci left: 7.281379e-02	ci right 7.342509e-02	k: 204002	n:2790000
ARHGEF12   2790000 perm   3661 sec   (762 perm/sec)   p_kst 7.311900e-02   p_cons 2.372760e-04   p_joint 6.258065e-04

Joint ci ratio: 9.359638e-02	ci left: 5.967633e-04	ci right 6.557060e-04	k: 1752	n:2800000
Cons ci ratio: 1.516512e-01	ci left: 2.204787e-04	ci right 2.569965e-04	k: 667	n:2800000
KS ci ratio: 8.341170e-03	ci left: 7.280678e-02	ci right 7.341696e-02	k: 204712	n:2800000
ARHGEF12   2800000 perm   3685 sec   (760 perm/sec)   p_kst 7.311143e-02   p_cons 2.382143e-04   p_joint 6.257143e-04

Joint ci ratio: 9.338351e-02	ci left: 5.974200e-04	ci right 6.562861e-04	k: 1760	n:2810000
Cons ci ratio: 1.515379e-01	ci left: 2.200365e-04	ci right 2.564513e-04	k: 668	n:2810000
KS ci ratio: 8.326733e-03	ci left: 7.280053e-02	ci right 7.340960e-02	k: 205424	n:2810000
ARHGEF12   2810000 perm   3708 sec   (758 perm/sec)   p_kst 7.310463e-02   p_cons 2.377224e-04   p_joint 6.263345e-04

Joint ci ratio: 9.335709e-02	ci left: 5.956478e-04	ci right 6.543217e-04	k: 1761	n:2820000
Cons ci ratio: 1.514248e-01	ci left: 2.195973e-04	ci right 2.559100e-04	k: 669	n:2820000
KS ci ratio: 8.312131e-03	ci left: 7.279822e-02	ci right 7.340620e-02	k: 206147	n:2820000
ARHGEF12   2820000 perm   3733 sec   (756 perm/sec)   p_kst 7.310177e-02   p_cons 2.372340e-04   p_joint 6.244681e-04

Joint ci ratio: 9.367693e-02	ci left: 5.894018e-04	ci right 6.476703e-04	k: 1749	n:2830000
Cons ci ratio: 1.514249e-01	ci left: 2.188214e-04	ci right 2.550057e-04	k: 669	n:2830000
KS ci ratio: 8.297454e-03	ci left: 7.279840e-02	ci right 7.340530e-02	k: 206877	n:2830000
ARHGEF12   2830000 perm   3756 sec   (753 perm/sec)   p_kst 7.310141e-02   p_cons 2.363958e-04   p_joint 6.180212e-04

Joint ci ratio: 9.351676e-02	ci left: 5.893897e-04	ci right 6.475519e-04	k: 1755	n:2840000
Cons ci ratio: 1.513120e-01	ci left: 2.183897e-04	ci right 2.544732e-04	k: 670	n:2840000
KS ci ratio: 8.284211e-03	ci left: 7.277644e-02	ci right 7.338218e-02	k: 207544	n:2840000
ARHGEF12   2840000 perm   3780 sec   (751 perm/sec)   p_kst 7.307887e-02   p_cons 2.359155e-04   p_joint 6.179577e-04

Joint ci ratio: 9.327798e-02	ci left: 5.904058e-04	ci right 6.485114e-04	k: 1764	n:2850000
Cons ci ratio: 1.508630e-01	ci left: 2.189738e-04	ci right 2.550369e-04	k: 674	n:2850000
KS ci ratio: 8.269468e-03	ci left: 7.278019e-02	ci right 7.338488e-02	k: 208284	n:2850000
ARHGEF12   2850000 perm   3804 sec   (749 perm/sec)   p_kst 7.308211e-02   p_cons 2.364912e-04   p_joint 6.189474e-04

Joint ci ratio: 9.311984e-02	ci left: 5.903904e-04	ci right 6.483907e-04	k: 1770	n:2860000
Cons ci ratio: 1.507514e-01	ci left: 2.185446e-04	ci right 2.545080e-04	k: 675	n:2860000
KS ci ratio: 8.255058e-03	ci left: 7.277974e-02	ci right 7.338337e-02	k: 209012	n:2860000
ARHGEF12   2860000 perm   3829 sec   (747 perm/sec)   p_kst 7.308112e-02   p_cons 2.360140e-04   p_joint 6.188811e-04

Joint ci ratio: 9.293634e-02	ci left: 5.907156e-04	ci right 6.486272e-04	k: 1777	n:2870000
Cons ci ratio: 1.505289e-01	ci left: 2.184538e-04	ci right 2.543443e-04	k: 677	n:2870000
KS ci ratio: 8.240130e-03	ci left: 7.278902e-02	ci right 7.339163e-02	k: 209768	n:2870000
ARHGEF12   2870000 perm   3854 sec   (745 perm/sec)   p_kst 7.308990e-02   p_cons 2.358885e-04   p_joint 6.191638e-04

Joint ci ratio: 9.277992e-02	ci left: 5.906995e-04	ci right 6.485067e-04	k: 1783	n:2880000
Cons ci ratio: 1.504180e-01	ci left: 2.180294e-04	ci right 2.538214e-04	k: 678	n:2880000
KS ci ratio: 8.225452e-03	ci left: 7.279547e-02	ci right 7.339705e-02	k: 210516	n:2880000
ARHGEF12   2880000 perm   3878 sec   (743 perm/sec)   p_kst 7.309583e-02   p_cons 2.354167e-04   p_joint 6.190972e-04

Joint ci ratio: 9.335780e-02	ci left: 5.812201e-04	ci right 6.384733e-04	k: 1761	n:2890000
Cons ci ratio: 1.503074e-01	ci left: 2.176080e-04	ci right 2.533022e-04	k: 679	n:2890000
KS ci ratio: 8.210872e-03	ci left: 7.280153e-02	ci right 7.340209e-02	k: 211263	n:2890000
ARHGEF12   2890000 perm   3903 sec   (741 perm/sec)   p_kst 7.310138e-02   p_cons 2.349481e-04   p_joint 6.093426e-04

Joint ci ratio: 9.327847e-02	ci left: 5.802262e-04	ci right 6.373303e-04	k: 1764	n:2900000
Cons ci ratio: 1.501971e-01	ci left: 2.171894e-04	ci right 2.527865e-04	k: 680	n:2900000
KS ci ratio: 8.196558e-03	ci left: 7.280445e-02	ci right 7.340399e-02	k: 212001	n:2900000
ARHGEF12   2900000 perm   3927 sec   (738 perm/sec)   p_kst 7.310379e-02   p_cons 2.344828e-04   p_joint 6.082759e-04

Joint ci ratio: 9.312033e-02	ci left: 5.802461e-04	ci right 6.372501e-04	k: 1770	n:2910000
Cons ci ratio: 1.495396e-01	ci left: 2.184276e-04	ci right 2.540569e-04	k: 686	n:2910000
KS ci ratio: 8.182235e-03	ci left: 7.280873e-02	ci right 7.340724e-02	k: 212743	n:2910000
ARHGEF12   2910000 perm   3952 sec   (736 perm/sec)   p_kst 7.310756e-02   p_cons 2.357388e-04   p_joint 6.082474e-04

Joint ci ratio: 9.291069e-02	ci left: 5.809350e-04	ci right 6.378712e-04	k: 1778	n:2920000
Cons ci ratio: 1.494310e-01	ci left: 2.180092e-04	ci right 2.535422e-04	k: 687	n:2920000
KS ci ratio: 8.167615e-03	ci left: 7.281912e-02	ci right 7.341665e-02	k: 213503	n:2920000
ARHGEF12   2920000 perm   3977 sec   (734 perm/sec)   p_kst 7.311747e-02   p_cons 2.352740e-04   p_joint 6.089041e-04

Joint ci ratio: 9.291079e-02	ci left: 5.789522e-04	ci right 6.356942e-04	k: 1778	n:2930000
Cons ci ratio: 1.493225e-01	ci left: 2.175937e-04	ci right 2.530309e-04	k: 688	n:2930000
KS ci ratio: 8.154223e-03	ci left: 7.281038e-02	ci right 7.340685e-02	k: 214207	n:2930000
ARHGEF12   2930000 perm   4001 sec   (732 perm/sec)   p_kst 7.310819e-02   p_cons 2.348123e-04   p_joint 6.068259e-04

Joint ci ratio: 9.272852e-02	ci left: 5.793087e-04	ci right 6.359681e-04	k: 1785	n:2940000
Cons ci ratio: 1.491063e-01	ci left: 2.175085e-04	ci right 2.528759e-04	k: 690	n:2940000
KS ci ratio: 8.139753e-03	ci left: 7.282070e-02	ci right 7.341619e-02	k: 214967	n:2940000
ARHGEF12   2940000 perm   4026 sec   (730 perm/sec)   p_kst 7.311803e-02   p_cons 2.346939e-04   p_joint 6.071429e-04

Joint ci ratio: 9.257315e-02	ci left: 5.793317e-04	ci right 6.358933e-04	k: 1791	n:2950000
Cons ci ratio: 1.488910e-01	ci left: 2.174239e-04	ci right 2.527219e-04	k: 692	n:2950000
KS ci ratio: 8.125807e-03	ci left: 7.282351e-02	ci right 7.341800e-02	k: 215705	n:2950000
ARHGEF12   2950000 perm   4053 sec   (728 perm/sec)   p_kst 7.312034e-02   p_cons 2.345763e-04   p_joint 6.071186e-04

Joint ci ratio: 9.333198e-02	ci left: 5.678048e-04	ci right 6.237202e-04	k: 1762	n:2960000
Cons ci ratio: 1.485697e-01	ci left: 2.176651e-04	ci right 2.529193e-04	k: 695	n:2960000
KS ci ratio: 8.111568e-03	ci left: 7.283238e-02	ci right 7.342589e-02	k: 216461	n:2960000
ARHGEF12   2960000 perm   4078 sec   (726 perm/sec)   p_kst 7.312872e-02   p_cons 2.347973e-04   p_joint 5.952703e-04

Joint ci ratio: 9.330560e-02	ci left: 5.662218e-04	ci right 6.219647e-04	k: 1763	n:2970000
Cons ci ratio: 1.483567e-01	ci left: 2.175806e-04	ci right 2.527661e-04	k: 697	n:2970000
KS ci ratio: 8.097665e-03	ci left: 7.283681e-02	ci right 7.342934e-02	k: 217204	n:2970000
ARHGEF12   2970000 perm   4103 sec   (724 perm/sec)   p_kst 7.313266e-02   p_cons 2.346801e-04   p_joint 5.936027e-04

Joint ci ratio: 9.314732e-02	ci left: 5.662882e-04	ci right 6.219380e-04	k: 1769	n:2980000
Cons ci ratio: 1.481446e-01	ci left: 2.174967e-04	ci right 2.526139e-04	k: 699	n:2980000
KS ci ratio: 8.083893e-03	ci left: 7.284021e-02	ci right 7.343176e-02	k: 217944	n:2980000
ARHGEF12   2980000 perm   4128 sec   (722 perm/sec)   p_kst 7.313557e-02   p_cons 2.345638e-04   p_joint 5.936242e-04

Joint ci ratio: 9.304227e-02	ci left: 5.657009e-04	ci right 6.212268e-04	k: 1773	n:2990000
Cons ci ratio: 1.481447e-01	ci left: 2.167693e-04	ci right 2.517691e-04	k: 699	n:2990000
KS ci ratio: 8.070451e-03	ci left: 7.283925e-02	ci right 7.342980e-02	k: 218671	n:2990000
ARHGEF12   2990000 perm   4154 sec   (720 perm/sec)   p_kst 7.313411e-02   p_cons 2.337793e-04   p_joint 5.929766e-04

Joint ci ratio: 9.293758e-02	ci left: 5.651176e-04	ci right 6.205204e-04	k: 1777	n:3000000
Cons ci ratio: 1.481448e-01	ci left: 2.160467e-04	ci right 2.509299e-04	k: 699	n:3000000
KS ci ratio: 8.056619e-03	ci left: 7.284595e-02	ci right 7.343554e-02	k: 219421	n:3000000
ARHGEF12   3000000 perm   4179 sec   (718 perm/sec)   p_kst 7.314033e-02   p_cons 2.330000e-04   p_joint 5.923333e-04

Joint ci ratio: 9.383976e-02	ci left: 5.522081e-04	ci right 6.068997e-04	k: 1743	n:3010000
Cons ci ratio: 1.479336e-01	ci left: 2.159688e-04	ci right 2.507853e-04	k: 701	n:3010000
KS ci ratio: 8.044258e-03	ci left: 7.282906e-02	ci right 7.341761e-02	k: 220100	n:3010000
ARHGEF12   3010000 perm   4204 sec   (716 perm/sec)   p_kst 7.312292e-02   p_cons 2.328904e-04   p_joint 5.790698e-04

Joint ci ratio: 9.405595e-02	ci left: 5.477927e-04	ci right 6.021789e-04	k: 1735	n:3020000
Cons ci ratio: 1.477233e-01	ci left: 2.158914e-04	ci right 2.506416e-04	k: 703	n:3020000
KS ci ratio: 8.029639e-03	ci left: 7.285129e-02	ci right 7.343894e-02	k: 220897	n:3020000
ARHGEF12   3020000 perm   4229 sec   (714 perm/sec)   p_kst 7.314470e-02   p_cons 2.327815e-04   p_joint 5.745033e-04

Joint ci ratio: 9.733707e-02	ci left: 5.089386e-04	ci right 5.613305e-04	k: 1620	n:3030000
Cons ci ratio: 1.474095e-01	ci left: 2.161325e-04	ci right 2.508410e-04	k: 706	n:3030000
KS ci ratio: 8.015762e-03	ci left: 7.286217e-02	ci right 7.344888e-02	k: 221660	n:3030000
ARHGEF12   3030000 perm   4255 sec   (712 perm/sec)   p_kst 7.315512e-02   p_cons 2.330033e-04   p_joint 5.346535e-04

Joint ci ratio: 9.727714e-02	ci left: 5.079063e-04	ci right 5.601580e-04	k: 1622	n:3040000
Cons ci ratio: 1.474096e-01	ci left: 2.154215e-04	ci right 2.500159e-04	k: 706	n:3040000
KS ci ratio: 8.002520e-03	ci left: 7.286345e-02	ci right 7.344920e-02	k: 222394	n:3040000
ARHGEF12   3040000 perm   4280 sec   (710 perm/sec)   p_kst 7.315592e-02   p_cons 2.322368e-04   p_joint 5.335526e-04

Joint ci ratio: 9.718739e-02	ci left: 5.072007e-04	ci right 5.593289e-04	k: 1625	n:3050000
Cons ci ratio: 1.472016e-01	ci left: 2.153468e-04	ci right 2.498760e-04	k: 708	n:3050000
KS ci ratio: 7.989536e-03	ci left: 7.286146e-02	ci right 7.344624e-02	k: 223118	n:3050000
ARHGEF12   3050000 perm   4306 sec   (708 perm/sec)   p_kst 7.315344e-02   p_cons 2.321311e-04   p_joint 5.327869e-04

Joint ci ratio: 9.712773e-02	ci left: 5.061809e-04	ci right 5.581705e-04	k: 1627	n:3060000
Cons ci ratio: 1.470979e-01	ci left: 2.149578e-04	ci right 2.493983e-04	k: 709	n:3060000
KS ci ratio: 7.976058e-03	ci left: 7.286894e-02	ci right 7.345279e-02	k: 223871	n:3060000
ARHGEF12   3060000 perm   4332 sec   (706 perm/sec)   p_kst 7.316046e-02   p_cons 2.316993e-04   p_joint 5.316993e-04

Joint ci ratio: 9.697893e-02	ci left: 5.061213e-04	ci right 5.580206e-04	k: 1632	n:3070000
Cons ci ratio: 1.464802e-01	ci left: 2.161402e-04	ci right 2.506120e-04	k: 715	n:3070000
KS ci ratio: 7.963318e-03	ci left: 7.286499e-02	ci right 7.344787e-02	k: 224589	n:3070000
ARHGEF12   3070000 perm   4357 sec   (705 perm/sec)   p_kst 7.315603e-02   p_cons 2.328990e-04   p_joint 5.315961e-04

Joint ci ratio: 9.683080e-02	ci left: 5.060620e-04	ci right 5.578715e-04	k: 1637	n:3080000
Cons ci ratio: 1.462760e-01	ci left: 2.160640e-04	ci right 2.504715e-04	k: 717	n:3080000
KS ci ratio: 7.951209e-03	ci left: 7.285134e-02	ci right 7.343323e-02	k: 225277	n:3080000
ARHGEF12   3080000 perm   4383 sec   (703 perm/sec)   p_kst 7.314188e-02   p_cons 2.327922e-04   p_joint 5.314935e-04

Joint ci ratio: 9.665393e-02	ci left: 5.063191e-04	ci right 5.580548e-04	k: 1643	n:3090000
Cons ci ratio: 1.459714e-01	ci left: 2.163002e-04	ci right 2.506672e-04	k: 720	n:3090000
KS ci ratio: 7.938606e-03	ci left: 7.284716e-02	ci right 7.342808e-02	k: 225994	n:3090000
ARHGEF12   3090000 perm   4409 sec   (701 perm/sec)   p_kst 7.313722e-02   p_cons 2.330097e-04   p_joint 5.317152e-04

Joint ci ratio: 9.647803e-02	ci left: 5.065745e-04	ci right 5.582368e-04	k: 1649	n:3100000
Cons ci ratio: 1.457693e-01	ci left: 2.162241e-04	ci right 2.505273e-04	k: 722	n:3100000
KS ci ratio: 7.925629e-03	ci left: 7.285040e-02	ci right 7.343040e-02	k: 226734	n:3100000
ARHGEF12   3100000 perm   4435 sec   (699 perm/sec)   p_kst 7.314000e-02   p_cons 2.329032e-04   p_joint 5.319355e-04

Joint ci ratio: 9.641966e-02	ci left: 5.055732e-04	ci right 5.571005e-04	k: 1651	n:3110000
Cons ci ratio: 1.454678e-01	ci left: 2.164583e-04	ci right 2.507215e-04	k: 725	n:3110000
KS ci ratio: 7.913578e-03	ci left: 7.283886e-02	ci right 7.341788e-02	k: 227428	n:3110000
ARHGEF12   3110000 perm   4459 sec   (697 perm/sec)   p_kst 7.312797e-02   p_cons 2.331190e-04   p_joint 5.308682e-04

Joint ci ratio: 9.630316e-02	ci left: 5.052040e-04	ci right 5.566278e-04	k: 1655	n:3120000
Cons ci ratio: 1.451682e-01	ci left: 2.166911e-04	ci right 2.509144e-04	k: 728	n:3120000
KS ci ratio: 7.901078e-03	ci left: 7.283604e-02	ci right 7.341411e-02	k: 228149	n:3120000
ARHGEF12   3120000 perm   4485 sec   (696 perm/sec)   p_kst 7.312468e-02   p_cons 2.333333e-04   p_joint 5.304487e-04

Joint ci ratio: 9.610024e-02	ci left: 5.057725e-04	ci right 5.571397e-04	k: 1662	n:3130000
Cons ci ratio: 1.451683e-01	ci left: 2.159988e-04	ci right 2.501127e-04	k: 728	n:3130000
KS ci ratio: 7.887875e-03	ci left: 7.284631e-02	ci right 7.342349e-02	k: 228911	n:3130000
ARHGEF12   3130000 perm   4510 sec   (694 perm/sec)   p_kst 7.313450e-02   p_cons 2.325879e-04   p_joint 5.309904e-04

Joint ci ratio: 9.706875e-02	ci left: 4.939059e-04	ci right 5.446022e-04	k: 1629	n:3140000
Cons ci ratio: 1.448705e-01	ci left: 2.162316e-04	ci right 2.503063e-04	k: 731	n:3140000
KS ci ratio: 7.875922e-03	ci left: 7.283617e-02	ci right 7.341239e-02	k: 229609	n:3140000
ARHGEF12   3140000 perm   4536 sec   (692 perm/sec)   p_kst 7.312389e-02   p_cons 2.328025e-04   p_joint 5.187898e-04

Joint ci ratio: 9.683138e-02	ci left: 4.948161e-04	ci right 5.454745e-04	k: 1637	n:3150000
Cons ci ratio: 1.444762e-01	ci left: 2.167691e-04	ci right 2.508274e-04	k: 735	n:3150000
KS ci ratio: 7.863065e-03	ci left: 7.284257e-02	ci right 7.341790e-02	k: 230359	n:3150000
ARHGEF12   3150000 perm   4562 sec   (690 perm/sec)   p_kst 7.312984e-02   p_cons 2.333333e-04   p_joint 5.196825e-04

Joint ci ratio: 9.692030e-02	ci left: 4.923238e-04	ci right 5.427760e-04	k: 1634	n:3160000
Cons ci ratio: 1.442803e-01	ci left: 2.166931e-04	ci right 2.506894e-04	k: 737	n:3160000
KS ci ratio: 7.851224e-03	ci left: 7.283250e-02	ci right 7.340689e-02	k: 231057	n:3160000
ARHGEF12   3160000 perm   4589 sec   (689 perm/sec)   p_kst 7.311930e-02   p_cons 2.332278e-04   p_joint 5.170886e-04

Joint ci ratio: 9.674294e-02	ci left: 4.926176e-04	ci right 5.430024e-04	k: 1640	n:3170000
Cons ci ratio: 1.440852e-01	ci left: 2.166177e-04	ci right 2.505522e-04	k: 739	n:3170000
KS ci ratio: 7.838542e-03	ci left: 7.283793e-02	ci right 7.341143e-02	k: 231804	n:3170000
ARHGEF12   3170000 perm   4615 sec   (687 perm/sec)   p_kst 7.312429e-02   p_cons 2.331230e-04   p_joint 5.173502e-04

Joint ci ratio: 9.668409e-02	ci left: 4.916822e-04	ci right 5.419390e-04	k: 1642	n:3180000
Cons ci ratio: 1.437940e-01	ci left: 2.168460e-04	ci right 2.507417e-04	k: 742	n:3180000
KS ci ratio: 7.826049e-03	ci left: 7.284113e-02	ci right 7.341373e-02	k: 232544	n:3180000
ARHGEF12   3180000 perm   4642 sec   (685 perm/sec)   p_kst 7.312704e-02   p_cons 2.333333e-04   p_joint 5.163522e-04

Joint ci ratio: 9.653731e-02	ci left: 4.916704e-04	ci right 5.418453e-04	k: 1647	n:3190000
Cons ci ratio: 1.435046e-01	ci left: 2.170728e-04	ci right 2.509299e-04	k: 745	n:3190000
KS ci ratio: 7.813940e-03	ci left: 7.283868e-02	ci right 7.341037e-02	k: 233266	n:3190000
ARHGEF12   3190000 perm   4669 sec   (683 perm/sec)   p_kst 7.312414e-02   p_cons 2.335423e-04   p_joint 5.163009e-04

Joint ci ratio: 9.644959e-02	ci left: 4.910488e-04	ci right 5.411122e-04	k: 1650	n:3200000
Cons ci ratio: 1.434085e-01	ci left: 2.166958e-04	ci right 2.504694e-04	k: 746	n:3200000
KS ci ratio: 7.801636e-03	ci left: 7.284061e-02	ci right 7.341141e-02	k: 234002	n:3200000
ARHGEF12   3200000 perm   4696 sec   (681 perm/sec)   p_kst 7.312562e-02   p_cons 2.331250e-04   p_joint 5.156250e-04

Joint ci ratio: 9.633298e-02	ci left: 4.907352e-04	ci right 5.407026e-04	k: 1654	n:3210000
Cons ci ratio: 1.432169e-01	ci left: 2.166214e-04	ci right 2.503345e-04	k: 748	n:3210000
KS ci ratio: 7.789085e-03	ci left: 7.284782e-02	ci right 7.341775e-02	k: 234755	n:3210000
ARHGEF12   3210000 perm   4723 sec   (680 perm/sec)   p_kst 7.313240e-02   p_cons 2.330218e-04   p_joint 5.152648e-04

Joint ci ratio: 9.621680e-02	ci left: 4.904235e-04	ci right 5.402956e-04	k: 1658	n:3220000
Cons ci ratio: 1.429310e-01	ci left: 2.168470e-04	ci right 2.505221e-04	k: 751	n:3220000
KS ci ratio: 7.777236e-03	ci left: 7.284382e-02	ci right 7.341285e-02	k: 235472	n:3220000
ARHGEF12   3220000 perm   4749 sec   (678 perm/sec)   p_kst 7.312795e-02   p_cons 2.332298e-04   p_joint 5.149068e-04

Joint ci ratio: 9.604327e-02	ci left: 4.907181e-04	ci right 5.405251e-04	k: 1664	n:3230000
Cons ci ratio: 1.427413e-01	ci left: 2.167727e-04	ci right 2.503878e-04	k: 753	n:3230000
KS ci ratio: 7.764944e-03	ci left: 7.284850e-02	ci right 7.341666e-02	k: 236217	n:3230000
ARHGEF12   3230000 perm   4776 sec   (676 perm/sec)   p_kst 7.313220e-02   p_cons 2.331269e-04   p_joint 5.151703e-04

Joint ci ratio: 9.581332e-02	ci left: 4.916134e-04	ci right 5.413851e-04	k: 1672	n:3240000
Cons ci ratio: 1.425524e-01	ci left: 2.166989e-04	ci right 2.502543e-04	k: 755	n:3240000
KS ci ratio: 7.752305e-03	ci left: 7.286023e-02	ci right 7.342757e-02	k: 236985	n:3240000
ARHGEF12   3240000 perm   4803 sec   (675 perm/sec)   p_kst 7.314352e-02   p_cons 2.330247e-04   p_joint 5.160494e-04

Joint ci ratio: 9.567046e-02	ci left: 4.916024e-04	ci right 5.412946e-04	k: 1677	n:3250000
Cons ci ratio: 1.422703e-01	ci left: 2.169223e-04	ci right 2.504402e-04	k: 758	n:3250000
KS ci ratio: 7.740552e-03	ci left: 7.285747e-02	ci right 7.342391e-02	k: 237706	n:3250000
ARHGEF12   3250000 perm   4830 sec   (673 perm/sec)   p_kst 7.314031e-02   p_cons 2.332308e-04   p_joint 5.160000e-04

Joint ci ratio: 9.558509e-02	ci left: 4.909926e-04	ci right 5.405764e-04	k: 1680	n:3260000
Cons ci ratio: 1.421767e-01	ci left: 2.165528e-04	ci right 2.499897e-04	k: 759	n:3260000
KS ci ratio: 7.727769e-03	ci left: 7.287370e-02	ci right 7.343933e-02	k: 238489	n:3260000
ARHGEF12   3260000 perm   4857 sec   (671 perm/sec)   p_kst 7.315613e-02   p_cons 2.328221e-04   p_joint 5.153374e-04

Joint ci ratio: 9.549994e-02	ci left: 4.903866e-04	ci right 5.398627e-04	k: 1683	n:3270000
Cons ci ratio: 1.420833e-01	ci left: 2.161855e-04	ci right 2.495419e-04	k: 760	n:3270000
KS ci ratio: 7.715641e-03	ci left: 7.287945e-02	ci right 7.344424e-02	k: 239238	n:3270000
ARHGEF12   3270000 perm   4884 sec   (669 perm/sec)   p_kst 7.316147e-02   p_cons 2.324159e-04   p_joint 5.146789e-04

Joint ci ratio: 9.538674e-02	ci left: 4.900819e-04	ci right 5.394653e-04	k: 1687	n:3280000
Cons ci ratio: 1.415264e-01	ci left: 2.172907e-04	ci right 2.506752e-04	k: 766	n:3280000
KS ci ratio: 7.703569e-03	ci left: 7.288517e-02	ci right 7.344912e-02	k: 239987	n:3280000
ARHGEF12   3280000 perm   4912 sec   (668 perm/sec)   p_kst 7.316677e-02   p_cons 2.335366e-04   p_joint 5.143293e-04

Joint ci ratio: 9.604372e-02	ci left: 4.817687e-04	ci right 5.306676e-04	k: 1664	n:3290000
Cons ci ratio: 1.413423e-01	ci left: 2.172167e-04	ci right 2.505426e-04	k: 768	n:3290000
KS ci ratio: 7.692709e-03	ci left: 7.287053e-02	ci right 7.343356e-02	k: 240669	n:3290000
ARHGEF12   3290000 perm   4939 sec   (666 perm/sec)   p_kst 7.315167e-02   p_cons 2.334347e-04   p_joint 5.057751e-04

Joint ci ratio: 9.730918e-02	ci left: 4.675933e-04	ci right 5.157145e-04	k: 1621	n:3300000
Cons ci ratio: 1.411588e-01	ci left: 2.171431e-04	ci right 2.504109e-04	k: 770	n:3300000
KS ci ratio: 7.681448e-03	ci left: 7.286385e-02	ci right 7.342600e-02	k: 241377	n:3300000
ARHGEF12   3300000 perm   4966 sec   (664 perm/sec)   p_kst 7.314455e-02   p_cons 2.333333e-04   p_joint 4.912121e-04

Joint ci ratio: 9.709985e-02	ci left: 4.682441e-04	ci right 5.163226e-04	k: 1628	n:3310000
Cons ci ratio: 1.407940e-01	ci left: 2.176529e-04	ci right 2.509054e-04	k: 774	n:3310000
KS ci ratio: 7.669724e-03	ci left: 7.286625e-02	ci right 7.342755e-02	k: 242115	n:3310000
ARHGEF12   3310000 perm   4994 sec   (663 perm/sec)   p_kst 7.314653e-02   p_cons 2.338369e-04   p_joint 4.918429e-04

Joint ci ratio: 9.698087e-02	ci left: 4.680093e-04	ci right 5.160015e-04	k: 1632	n:3320000
Cons ci ratio: 1.406127e-01	ci left: 2.175785e-04	ci right 2.507733e-04	k: 776	n:3320000
KS ci ratio: 7.658666e-03	ci left: 7.285781e-02	ci right 7.341824e-02	k: 242817	n:3320000
ARHGEF12   3320000 perm   5021 sec   (661 perm/sec)   p_kst 7.313765e-02   p_cons 2.337349e-04   p_joint 4.915663e-04

Joint ci ratio: 9.692158e-02	ci left: 4.671899e-04	ci right 5.150671e-04	k: 1634	n:3330000
Cons ci ratio: 1.404321e-01	ci left: 2.175046e-04	ci right 2.506419e-04	k: 778	n:3330000
KS ci ratio: 7.647283e-03	ci left: 7.285602e-02	ci right 7.341560e-02	k: 243541	n:3330000
ARHGEF12   3330000 perm   5049 sec   (660 perm/sec)   p_kst 7.313544e-02   p_cons 2.336336e-04   p_joint 4.906907e-04

Joint ci ratio: 9.677372e-02	ci left: 4.672518e-04	ci right 5.150582e-04	k: 1639	n:3340000
Cons ci ratio: 1.403421e-01	ci left: 2.171423e-04	ci right 2.502014e-04	k: 779	n:3340000
KS ci ratio: 7.635579e-03	ci left: 7.286081e-02	ci right 7.341957e-02	k: 244287	n:3340000
ARHGEF12   3340000 perm   5076 sec   (658 perm/sec)   p_kst 7.313982e-02   p_cons 2.332335e-04   p_joint 4.907186e-04

Joint ci ratio: 9.742981e-02	ci left: 4.594493e-04	ci right 5.067942e-04	k: 1617	n:3350000
Cons ci ratio: 1.402523e-01	ci left: 2.167821e-04	ci right 2.497635e-04	k: 780	n:3350000
KS ci ratio: 7.623963e-03	ci left: 7.286498e-02	ci right 7.342292e-02	k: 245031	n:3350000
ARHGEF12   3350000 perm   5105 sec   (656 perm/sec)   p_kst 7.314358e-02   p_cons 2.328358e-04   p_joint 4.826866e-04

Joint ci ratio: 9.843939e-02	ci left: 4.485009e-04	ci right 4.952242e-04	k: 1584	n:3360000
Cons ci ratio: 1.402523e-01	ci left: 2.161369e-04	ci right 2.490202e-04	k: 780	n:3360000
KS ci ratio: 7.612850e-03	ci left: 7.286111e-02	ci right 7.341820e-02	k: 245748	n:3360000
ARHGEF12   3360000 perm   5132 sec   (655 perm/sec)   p_kst 7.313929e-02   p_cons 2.321429e-04   p_joint 4.714286e-04

Joint ci ratio: 9.957733e-02	ci left: 4.367519e-04	ci right 4.828079e-04	k: 1548	n:3370000
Cons ci ratio: 1.402524e-01	ci left: 2.154956e-04	ci right 2.482812e-04	k: 780	n:3370000
KS ci ratio: 7.602169e-03	ci left: 7.285045e-02	ci right 7.340667e-02	k: 246442	n:3370000
ARHGEF12   3370000 perm   5160 sec   (653 perm/sec)   p_kst 7.312819e-02   p_cons 2.314540e-04   p_joint 4.593472e-04

Joint ci ratio: 9.948106e-02	ci left: 4.363252e-04	ci right 4.822891e-04	k: 1551	n:3380000
Cons ci ratio: 1.399837e-01	ci left: 2.157145e-04	ci right 2.484653e-04	k: 783	n:3380000
KS ci ratio: 7.591168e-03	ci left: 7.284634e-02	ci right 7.340172e-02	k: 247158	n:3380000
ARHGEF12   3380000 perm   5189 sec   (651 perm/sec)   p_kst 7.312367e-02   p_cons 2.316568e-04   p_joint 4.588757e-04

Joint ci ratio: 9.938508e-02	ci left: 4.359010e-04	ci right 4.817734e-04	k: 1554	n:3390000
Cons ci ratio: 1.399838e-01	ci left: 2.150781e-04	ci right 2.477324e-04	k: 783	n:3390000
KS ci ratio: 7.579308e-03	ci left: 7.285846e-02	ci right 7.341306e-02	k: 247929	n:3390000
ARHGEF12   3390000 perm   5217 sec   (650 perm/sec)   p_kst 7.313540e-02   p_cons 2.309735e-04   p_joint 4.584071e-04

Joint ci ratio: 9.928937e-02	ci left: 4.354794e-04	ci right 4.812607e-04	k: 1557	n:3400000
Cons ci ratio: 1.394511e-01	ci left: 2.161486e-04	ci right 2.488301e-04	k: 789	n:3400000
KS ci ratio: 7.568012e-03	ci left: 7.286141e-02	ci right 7.341520e-02	k: 248669	n:3400000
ARHGEF12   3400000 perm   5245 sec   (648 perm/sec)   p_kst 7.313794e-02   p_cons 2.320588e-04   p_joint 4.579412e-04

Joint ci ratio: 9.909871e-02	ci left: 4.359182e-04	ci right 4.816525e-04	k: 1563	n:3410000
Cons ci ratio: 1.390118e-01	ci left: 2.169299e-04	ci right 2.496177e-04	k: 794	n:3410000
KS ci ratio: 7.557044e-03	ci left: 7.285936e-02	ci right 7.341233e-02	k: 249392	n:3410000
ARHGEF12   3410000 perm   5273 sec   (647 perm/sec)   p_kst 7.313548e-02   p_cons 2.328446e-04   p_joint 4.583578e-04

Joint ci ratio: 9.894068e-02	ci left: 4.360694e-04	ci right 4.817424e-04	k: 1568	n:3420000
Cons ci ratio: 1.388373e-01	ci left: 2.168601e-04	ci right 2.494930e-04	k: 796	n:3420000
KS ci ratio: 7.545944e-03	ci left: 7.286054e-02	ci right 7.341270e-02	k: 250126	n:3420000
ARHGEF12   3420000 perm   5301 sec   (645 perm/sec)   p_kst 7.313626e-02   p_cons 2.327485e-04   p_joint 4.584795e-04

Joint ci ratio: 9.872067e-02	ci left: 4.367884e-04	ci right 4.824291e-04	k: 1575	n:3430000
Cons ci ratio: 1.386635e-01	ci left: 2.167907e-04	ci right 2.493689e-04	k: 798	n:3430000
KS ci ratio: 7.534699e-03	ci left: 7.286520e-02	ci right 7.341657e-02	k: 250872	n:3430000
ARHGEF12   3430000 perm   5329 sec   (644 perm/sec)   p_kst 7.314052e-02   p_cons 2.326531e-04   p_joint 4.591837e-04

Joint ci ratio: 9.856444e-02	ci left: 4.369363e-04	ci right 4.825160e-04	k: 1580	n:3440000
Cons ci ratio: 1.386635e-01	ci left: 2.161605e-04	ci right 2.486440e-04	k: 798	n:3440000
KS ci ratio: 7.523795e-03	ci left: 7.286461e-02	ci right 7.341518e-02	k: 251600	n:3440000
ARHGEF12   3440000 perm   5357 sec   (642 perm/sec)   p_kst 7.313953e-02   p_cons 2.319767e-04   p_joint 4.593023e-04

Joint ci ratio: 9.850219e-02	ci left: 4.362353e-04	ci right 4.817114e-04	k: 1582	n:3450000
Cons ci ratio: 1.384903e-01	ci left: 2.160936e-04	ci right 2.485231e-04	k: 800	n:3450000
KS ci ratio: 7.513500e-03	ci left: 7.285390e-02	ci right 7.340363e-02	k: 252293	n:3450000
ARHGEF12   3450000 perm   5385 sec   (641 perm/sec)   p_kst 7.312841e-02   p_cons 2.318841e-04   p_joint 4.585507e-04

Joint ci ratio: 9.919426e-02	ci left: 4.287732e-04	ci right 4.738038e-04	k: 1560	n:3460000
Cons ci ratio: 1.383177e-01	ci left: 2.160270e-04	ci right 2.484028e-04	k: 802	n:3460000
KS ci ratio: 7.502527e-03	ci left: 7.285623e-02	ci right 7.340518e-02	k: 253031	n:3460000
ARHGEF12   3460000 perm   5414 sec   (639 perm/sec)   p_kst 7.313035e-02   p_cons 2.317919e-04   p_joint 4.508671e-04

Joint ci ratio: 9.922613e-02	ci left: 4.272565e-04	ci right 4.721431e-04	k: 1559	n:3470000
Cons ci ratio: 1.381458e-01	ci left: 2.159609e-04	ci right 2.482833e-04	k: 804	n:3470000
KS ci ratio: 7.492016e-03	ci left: 7.285107e-02	ci right 7.339921e-02	k: 253743	n:3470000
ARHGEF12   3470000 perm   5443 sec   (638 perm/sec)   p_kst 7.312478e-02   p_cons 2.317003e-04   p_joint 4.492795e-04

Joint ci ratio: 9.909917e-02	ci left: 4.271497e-04	ci right 4.719642e-04	k: 1563	n:3480000
Cons ci ratio: 1.377187e-01	ci left: 2.167275e-04	ci right 2.490561e-04	k: 809	n:3480000
KS ci ratio: 7.481454e-03	ci left: 7.284767e-02	ci right 7.339500e-02	k: 254461	n:3480000
ARHGEF12   3480000 perm   5471 sec   (636 perm/sec)   p_kst 7.312098e-02   p_cons 2.324713e-04   p_joint 4.491379e-04

Joint ci ratio: 9.894114e-02	ci left: 4.273229e-04	ci right 4.720800e-04	k: 1568	n:3490000
Cons ci ratio: 1.376338e-01	ci left: 2.163832e-04	ci right 2.486389e-04	k: 810	n:3490000
KS ci ratio: 7.470305e-03	ci left: 7.285572e-02	ci right 7.340229e-02	k: 255219	n:3490000
ARHGEF12   3490000 perm   5500 sec   (635 perm/sec)   p_kst 7.312865e-02   p_cons 2.320917e-04   p_joint 4.492837e-04

Joint ci ratio: 9.878385e-02	ci left: 4.274953e-04	ci right 4.721951e-04	k: 1573	n:3500000
Cons ci ratio: 1.376338e-01	ci left: 2.157650e-04	ci right 2.479285e-04	k: 810	n:3500000
KS ci ratio: 7.459646e-03	ci left: 7.285574e-02	ci right 7.340153e-02	k: 255949	n:3500000
ARHGEF12   3500000 perm   5528 sec   (633 perm/sec)   p_kst 7.312829e-02   p_cons 2.314286e-04   p_joint 4.494286e-04

Joint ci ratio: 9.865858e-02	ci left: 4.273888e-04	ci right 4.720176e-04	k: 1577	n:3510000
Cons ci ratio: 1.373800e-01	ci left: 2.159755e-04	ci right 2.481063e-04	k: 813	n:3510000
KS ci ratio: 7.448687e-03	ci left: 7.286203e-02	ci right 7.340706e-02	k: 256701	n:3510000
ARHGEF12   3510000 perm   5557 sec   (632 perm/sec)   p_kst 7.313419e-02   p_cons 2.316239e-04   p_joint 4.492877e-04

Joint ci ratio: 9.850264e-02	ci left: 4.275600e-04	ci right 4.721321e-04	k: 1582	n:3520000
Cons ci ratio: 1.367930e-01	ci left: 2.172824e-04	ci right 2.494582e-04	k: 820	n:3520000
KS ci ratio: 7.437824e-03	ci left: 7.286742e-02	ci right 7.341169e-02	k: 257450	n:3520000
ARHGEF12   3520000 perm   5587 sec   (630 perm/sec)   p_kst 7.313920e-02   p_cons 2.329545e-04   p_joint 4.494318e-04

Joint ci ratio: 9.837843e-02	ci left: 4.274541e-04	ci right 4.719556e-04	k: 1586	n:3530000
Cons ci ratio: 1.365437e-01	ci left: 2.174877e-04	ci right 2.496304e-04	k: 823	n:3530000
KS ci ratio: 7.427334e-03	ci left: 7.286685e-02	ci right 7.341034e-02	k: 258178	n:3530000
ARHGEF12   3530000 perm   5616 sec   (629 perm/sec)   p_kst 7.313824e-02   p_cons 2.331445e-04   p_joint 4.492918e-04

Joint ci ratio: 9.887842e-02	ci left: 4.218382e-04	ci right 4.659913e-04	k: 1570	n:3540000
Cons ci ratio: 1.363783e-01	ci left: 2.174190e-04	ci right 2.495095e-04	k: 825	n:3540000
KS ci ratio: 7.418079e-03	ci left: 7.284456e-02	ci right 7.338721e-02	k: 258829	n:3540000
ARHGEF12   3540000 perm   5646 sec   (627 perm/sec)   p_kst 7.311554e-02   p_cons 2.330508e-04   p_joint 4.435028e-04

Joint ci ratio: 8.754161e-02	ci left: 5.397905e-04	ci right 5.894808e-04	k: 2003	n:3550000
Cons ci ratio: 1.360493e-01	ci left: 2.178949e-04	ci right 2.499718e-04	k: 829	n:3550000
KS ci ratio: 7.407734e-03	ci left: 7.284293e-02	ci right 7.338481e-02	k: 259553	n:3550000
ARHGEF12   3550000 perm   5675 sec   (626 perm/sec)   p_kst 7.311352e-02   p_cons 2.335211e-04   p_joint 5.642254e-04

Joint ci ratio: 8.743261e-02	ci left: 5.396480e-04	ci right 5.892601e-04	k: 2008	n:3560000
Cons ci ratio: 1.357226e-01	ci left: 2.183683e-04	ci right 2.504314e-04	k: 833	n:3560000
KS ci ratio: 7.396880e-03	ci left: 7.285140e-02	ci right 7.339255e-02	k: 260313	n:3560000
ARHGEF12   3560000 perm   5705 sec   (624 perm/sec)   p_kst 7.312163e-02   p_cons 2.339888e-04   p_joint 5.640449e-04

Joint ci ratio: 8.734572e-02	ci left: 5.392323e-04	ci right 5.887545e-04	k: 2012	n:3570000
Cons ci ratio: 1.357226e-01	ci left: 2.177566e-04	ci right 2.497299e-04	k: 833	n:3570000
KS ci ratio: 7.385509e-03	ci left: 7.287018e-02	ci right 7.341063e-02	k: 261110	n:3570000
ARHGEF12   3570000 perm   5757 sec   (620 perm/sec)   p_kst 7.314006e-02   p_cons 2.333333e-04   p_joint 5.635854e-04

Joint ci ratio: 8.723746e-02	ci left: 5.390922e-04	ci right 5.885370e-04	k: 2017	n:3580000
Cons ci ratio: 1.353176e-01	ci left: 2.184976e-04	ci right 2.504763e-04	k: 838	n:3580000
KS ci ratio: 7.375299e-03	ci left: 7.286849e-02	ci right 7.340818e-02	k: 261834	n:3580000
ARHGEF12   3580000 perm   5787 sec   (619 perm/sec)   p_kst 7.313799e-02   p_cons 2.340782e-04   p_joint 5.634078e-04

Joint ci ratio: 8.749821e-02	ci left: 5.343209e-04	ci right 5.834821e-04	k: 2005	n:3590000
Cons ci ratio: 1.349161e-01	ci left: 2.192347e-04	ci right 2.512184e-04	k: 843	n:3590000
KS ci ratio: 7.365207e-03	ci left: 7.286542e-02	ci right 7.340435e-02	k: 262553	n:3590000
ARHGEF12   3590000 perm   5817 sec   (617 perm/sec)   p_kst 7.313454e-02   p_cons 2.348189e-04   p_joint 5.584958e-04

Joint ci ratio: 8.736764e-02	ci left: 5.344669e-04	ci right 5.835644e-04	k: 2011	n:3600000
Cons ci ratio: 1.346769e-01	ci left: 2.194309e-04	ci right 2.513820e-04	k: 846	n:3600000
KS ci ratio: 7.354720e-03	ci left: 7.287042e-02	ci right 7.340860e-02	k: 263301	n:3600000
ARHGEF12   3600000 perm   5855 sec   (615 perm/sec)   p_kst 7.313917e-02   p_cons 2.350000e-04   p_joint 5.586111e-04

Joint ci ratio: 8.760766e-02	ci left: 5.300059e-04	ci right 5.788342e-04	k: 2000	n:3610000
Cons ci ratio: 1.344390e-01	ci left: 2.196261e-04	ci right 2.515446e-04	k: 849	n:3610000
KS ci ratio: 7.344397e-03	ci left: 7.287317e-02	ci right 7.341062e-02	k: 264041	n:3610000
ARHGEF12   3610000 perm   5903 sec   (612 perm/sec)   p_kst 7.314155e-02   p_cons 2.351801e-04   p_joint 5.540166e-04

Joint ci ratio: 8.749841e-02	ci left: 5.298928e-04	ci right 5.786467e-04	k: 2005	n:3620000
Cons ci ratio: 1.342024e-01	ci left: 2.198203e-04	ci right 2.517063e-04	k: 852	n:3620000
KS ci ratio: 7.334372e-03	ci left: 7.287122e-02	ci right 7.340792e-02	k: 264764	n:3620000
ARHGEF12   3620000 perm   5937 sec   (610 perm/sec)   p_kst 7.313923e-02   p_cons 2.353591e-04   p_joint 5.538674e-04

Joint ci ratio: 8.730275e-02	ci left: 5.308582e-04	ci right 5.795861e-04	k: 2014	n:3630000
Cons ci ratio: 1.339670e-01	ci left: 2.200135e-04	ci right 2.518670e-04	k: 855	n:3630000
KS ci ratio: 7.324462e-03	ci left: 7.286791e-02	ci right 7.340385e-02	k: 265482	n:3630000
ARHGEF12   3630000 perm   5967 sec   (608 perm/sec)   p_kst 7.313554e-02   p_cons 2.355372e-04   p_joint 5.548209e-04

Joint ci ratio: 8.732450e-02	ci left: 5.291311e-04	ci right 5.777131e-04	k: 2013	n:3640000
Cons ci ratio: 1.336551e-01	ci left: 2.204712e-04	ci right 2.523108e-04	k: 859	n:3640000
KS ci ratio: 7.314132e-03	ci left: 7.287311e-02	ci right 7.340834e-02	k: 266231	n:3640000
ARHGEF12   3640000 perm   5997 sec   (607 perm/sec)   p_kst 7.314038e-02   p_cons 2.359890e-04   p_joint 5.530220e-04

Joint ci ratio: 8.715155e-02	ci left: 5.298254e-04	ci right 5.783699e-04	k: 2021	n:3650000
Cons ci ratio: 1.334226e-01	ci left: 2.206616e-04	ci right 2.524688e-04	k: 862	n:3650000
KS ci ratio: 7.303802e-03	ci left: 7.287911e-02	ci right 7.341362e-02	k: 266983	n:3650000
ARHGEF12   3650000 perm   6027 sec   (606 perm/sec)   p_kst 7.314603e-02   p_cons 2.361644e-04   p_joint 5.536986e-04

Joint ci ratio: 8.702252e-02	ci left: 5.299814e-04	ci right 5.784647e-04	k: 2027	n:3660000
Cons ci ratio: 1.332682e-01	ci left: 2.205869e-04	ci right 2.523437e-04	k: 864	n:3660000
KS ci ratio: 7.293824e-03	ci left: 7.287935e-02	ci right 7.341313e-02	k: 267714	n:3660000
ARHGEF12   3660000 perm   6058 sec   (604 perm/sec)   p_kst 7.314590e-02   p_cons 2.360656e-04   p_joint 5.538251e-04

Joint ci ratio: 8.695826e-02	ci left: 5.293369e-04	ci right 5.777238e-04	k: 2030	n:3670000
Cons ci ratio: 1.331144e-01	ci left: 2.205127e-04	ci right 2.522192e-04	k: 866	n:3670000
KS ci ratio: 7.283726e-03	ci left: 7.288258e-02	ci right 7.341564e-02	k: 268456	n:3670000
ARHGEF12   3670000 perm   6088 sec   (603 perm/sec)   p_kst 7.314877e-02   p_cons 2.359673e-04   p_joint 5.531335e-04

Joint ci ratio: 8.689414e-02	ci left: 5.286960e-04	ci right 5.769868e-04	k: 2033	n:3680000
Cons ci ratio: 1.330378e-01	ci left: 2.201761e-04	ci right 2.518146e-04	k: 867	n:3680000
KS ci ratio: 7.273757e-03	ci left: 7.288417e-02	ci right 7.341651e-02	k: 269192	n:3680000
ARHGEF12   3680000 perm   6119 sec   (601 perm/sec)   p_kst 7.315000e-02   p_cons 2.355978e-04   p_joint 5.524457e-04

Joint ci ratio: 8.680884e-02	ci left: 5.283237e-04	ci right 5.765307e-04	k: 2037	n:3690000
Cons ci ratio: 1.328084e-01	ci left: 2.203654e-04	ci right 2.519722e-04	k: 870	n:3690000
KS ci ratio: 7.263960e-03	ci left: 7.288331e-02	ci right 7.341492e-02	k: 269919	n:3690000
ARHGEF12   3690000 perm   6150 sec   (600 perm/sec)   p_kst 7.314878e-02   p_cons 2.357724e-04   p_joint 5.520325e-04

Joint ci ratio: 8.674505e-02	ci left: 5.276890e-04	ci right 5.758009e-04	k: 2040	n:3700000
Cons ci ratio: 1.325803e-01	ci left: 2.205537e-04	ci right 2.521289e-04	k: 873	n:3700000
KS ci ratio: 7.254245e-03	ci left: 7.288165e-02	ci right 7.341253e-02	k: 270643	n:3700000
ARHGEF12   3700000 perm   6182 sec   (599 perm/sec)   p_kst 7.314676e-02   p_cons 2.359459e-04   p_joint 5.513514e-04

Joint ci ratio: 8.659666e-02	ci left: 5.281126e-04	ci right 5.761766e-04	k: 2047	n:3710000
Cons ci ratio: 1.323533e-01	ci left: 2.207411e-04	ci right 2.522848e-04	k: 876	n:3710000
KS ci ratio: 7.244325e-03	ci left: 7.288457e-02	ci right 7.341475e-02	k: 271384	n:3710000
ARHGEF12   3710000 perm   6213 sec   (597 perm/sec)   p_kst 7.314933e-02   p_cons 2.361186e-04   p_joint 5.517520e-04

Joint ci ratio: 8.640697e-02	ci left: 5.290599e-04	ci right 5.770994e-04	k: 2056	n:3720000
Cons ci ratio: 1.321275e-01	ci left: 2.209275e-04	ci right 2.524397e-04	k: 879	n:3720000
KS ci ratio: 7.234130e-03	ci left: 7.289338e-02	ci right 7.342287e-02	k: 272147	n:3720000
ARHGEF12   3720000 perm   6243 sec   (596 perm/sec)   p_kst 7.315780e-02   p_cons 2.362903e-04   p_joint 5.526882e-04

Joint ci ratio: 8.653340e-02	ci left: 5.260677e-04	ci right 5.739089e-04	k: 2050	n:3730000
Cons ci ratio: 1.318282e-01	ci left: 2.213722e-04	ci right 2.528707e-04	k: 883	n:3730000
KS ci ratio: 7.224306e-03	ci left: 7.289599e-02	ci right 7.342478e-02	k: 272887	n:3730000
ARHGEF12   3730000 perm   6275 sec   (594 perm/sec)   p_kst 7.316005e-02   p_cons 2.367292e-04   p_joint 5.495979e-04

Joint ci ratio: 8.683048e-02	ci left: 5.209989e-04	ci right 5.685500e-04	k: 2036	n:3740000
Cons ci ratio: 1.316051e-01	ci left: 2.215560e-04	ci right 2.530231e-04	k: 886	n:3740000
KS ci ratio: 7.214564e-03	ci left: 7.289778e-02	ci right 7.342587e-02	k: 273624	n:3740000
ARHGEF12   3740000 perm   6306 sec   (593 perm/sec)   p_kst 7.316150e-02   p_cons 2.368984e-04   p_joint 5.443850e-04

Joint ci ratio: 8.674537e-02	ci left: 5.206531e-04	ci right 5.681237e-04	k: 2040	n:3750000
Cons ci ratio: 1.313831e-01	ci left: 2.217388e-04	ci right 2.531747e-04	k: 889	n:3750000
KS ci ratio: 7.204522e-03	ci left: 7.290596e-02	ci right 7.343337e-02	k: 274385	n:3750000
ARHGEF12   3750000 perm   6337 sec   (592 perm/sec)   p_kst 7.316933e-02   p_cons 2.370667e-04   p_joint 5.440000e-04

Joint ci ratio: 8.655470e-02	ci left: 5.216101e-04	ci right 5.690582e-04	k: 2049	n:3760000
Cons ci ratio: 1.313094e-01	ci left: 2.214063e-04	ci right 2.527760e-04	k: 890	n:3760000
KS ci ratio: 7.194409e-03	ci left: 7.291621e-02	ci right 7.344295e-02	k: 275154	n:3760000
ARHGEF12   3760000 perm   6369 sec   (590 perm/sec)   p_kst 7.317926e-02   p_cons 2.367021e-04   p_joint 5.449468e-04

Joint ci ratio: 8.647040e-02	ci left: 5.212646e-04	ci right 5.686327e-04	k: 2053	n:3770000
Cons ci ratio: 1.311622e-01	ci left: 2.213321e-04	ci right 2.526534e-04	k: 892	n:3770000
KS ci ratio: 7.184577e-03	ci left: 7.292191e-02	ci right 7.344797e-02	k: 275906	n:3770000
ARHGEF12   3770000 perm   6400 sec   (589 perm/sec)   p_kst 7.318462e-02   p_cons 2.366048e-04   p_joint 5.445623e-04

Joint ci ratio: 8.638634e-02	ci left: 5.209209e-04	ci right 5.682094e-04	k: 2057	n:3780000
Cons ci ratio: 1.308694e-01	ci left: 2.217701e-04	ci right 2.530779e-04	k: 896	n:3780000
KS ci ratio: 7.174674e-03	ci left: 7.292970e-02	ci right 7.345508e-02	k: 276666	n:3780000
ARHGEF12   3780000 perm   6431 sec   (588 perm/sec)   p_kst 7.319206e-02   p_cons 2.370370e-04   p_joint 5.441799e-04

Joint ci ratio: 8.636541e-02	ci left: 5.198046e-04	ci right 5.669798e-04	k: 2058	n:3790000
Cons ci ratio: 1.307966e-01	ci left: 2.214402e-04	ci right 2.526826e-04	k: 897	n:3790000
KS ci ratio: 7.165173e-03	ci left: 7.293059e-02	ci right 7.345528e-02	k: 277400	n:3790000
ARHGEF12   3790000 perm   6462 sec   (586 perm/sec)   p_kst 7.319261e-02   p_cons 2.366755e-04   p_joint 5.430079e-04

Joint ci ratio: 8.626074e-02	ci left: 5.197241e-04	ci right 5.668319e-04	k: 2063	n:3800000
Cons ci ratio: 1.307238e-01	ci left: 2.211120e-04	ci right 2.522895e-04	k: 898	n:3800000
KS ci ratio: 7.155821e-03	ci left: 7.292938e-02	ci right 7.345338e-02	k: 278126	n:3800000
ARHGEF12   3800000 perm   6495 sec   (585 perm/sec)   p_kst 7.319105e-02   p_cons 2.363158e-04   p_joint 5.428947e-04

Joint ci ratio: 8.599028e-02	ci left: 5.216986e-04	ci right 5.688297e-04	k: 2076	n:3810000
Cons ci ratio: 1.305063e-01	ci left: 2.212933e-04	ci right 2.524404e-04	k: 901	n:3810000
KS ci ratio: 7.145995e-03	ci left: 7.293787e-02	ci right 7.346120e-02	k: 278889	n:3810000
ARHGEF12   3810000 perm   6527 sec   (584 perm/sec)   p_kst 7.319921e-02   p_cons 2.364829e-04   p_joint 5.448819e-04

Joint ci ratio: 8.594895e-02	ci left: 5.208452e-04	ci right 5.678754e-04	k: 2078	n:3820000
Cons ci ratio: 1.304340e-01	ci left: 2.209672e-04	ci right 2.520499e-04	k: 902	n:3820000
KS ci ratio: 7.136663e-03	ci left: 7.293769e-02	ci right 7.346034e-02	k: 279619	n:3820000
ARHGEF12   3820000 perm   6559 sec   (582 perm/sec)   p_kst 7.319869e-02   p_cons 2.361257e-04   p_joint 5.439791e-04

Joint ci ratio: 8.617742e-02	ci left: 5.166750e-04	ci right 5.634589e-04	k: 2067	n:3830000
Cons ci ratio: 1.303619e-01	ci left: 2.206429e-04	ci right 2.516614e-04	k: 903	n:3830000
KS ci ratio: 7.127463e-03	ci left: 7.293569e-02	ci right 7.345765e-02	k: 280342	n:3830000
ARHGEF12   3830000 perm   6598 sec   (580 perm/sec)   p_kst 7.319634e-02   p_cons 2.357702e-04   p_joint 5.396867e-04

Joint ci ratio: 8.601118e-02	ci left: 5.173679e-04	ci right 5.641197e-04	k: 2075	n:3840000
Cons ci ratio: 1.301461e-01	ci left: 2.208241e-04	ci right 2.518127e-04	k: 906	n:3840000
KS ci ratio: 7.118395e-03	ci left: 7.293188e-02	ci right 7.345314e-02	k: 281058	n:3840000
ARHGEF12   3840000 perm   6639 sec   (578 perm/sec)   p_kst 7.319219e-02   p_cons 2.359375e-04   p_joint 5.403646e-04

Joint ci ratio: 8.617754e-02	ci left: 5.139909e-04	ci right 5.605319e-04	k: 2067	n:3850000
Cons ci ratio: 1.300028e-01	ci left: 2.207531e-04	ci right 2.516950e-04	k: 908	n:3850000
KS ci ratio: 7.108748e-03	ci left: 7.293976e-02	ci right 7.346037e-02	k: 281819	n:3850000
ARHGEF12   3850000 perm   6672 sec   (577 perm/sec)   p_kst 7.319974e-02   p_cons 2.358442e-04   p_joint 5.368831e-04

Joint ci ratio: 8.611512e-02	ci left: 5.134198e-04	ci right 5.598737e-04	k: 2070	n:3860000
Cons ci ratio: 1.296467e-01	ci left: 2.214345e-04	ci right 2.523803e-04	k: 913	n:3860000
KS ci ratio: 7.099697e-03	ci left: 7.293699e-02	ci right 7.345691e-02	k: 282539	n:3860000
ARHGEF12   3860000 perm   6704 sec   (576 perm/sec)   p_kst 7.319663e-02   p_cons 2.365285e-04   p_joint 5.362694e-04

Joint ci ratio: 8.594925e-02	ci left: 5.141158e-04	ci right 5.605386e-04	k: 2078	n:3870000
Cons ci ratio: 1.291530e-01	ci left: 2.226125e-04	ci right 2.535955e-04	k: 920	n:3870000
KS ci ratio: 7.090464e-03	ci left: 7.293837e-02	ci right 7.345762e-02	k: 283275	n:3870000
ARHGEF12   3870000 perm   6737 sec   (574 perm/sec)   p_kst 7.319767e-02   p_cons 2.377261e-04   p_joint 5.369509e-04

Joint ci ratio: 8.578433e-02	ci left: 5.148084e-04	ci right 5.612000e-04	k: 2086	n:3880000
Cons ci ratio: 1.289432e-01	ci left: 2.227870e-04	ci right 2.537400e-04	k: 923	n:3880000
KS ci ratio: 7.081522e-03	ci left: 7.293485e-02	ci right 7.345342e-02	k: 283992	n:3880000
ARHGEF12   3880000 perm   6769 sec   (573 perm/sec)   p_kst 7.319381e-02   p_cons 2.378866e-04   p_joint 5.376289e-04

Joint ci ratio: 8.651328e-02	ci left: 5.046812e-04	ci right 5.505663e-04	k: 2051	n:3890000
Cons ci ratio: 1.287343e-01	ci left: 2.229607e-04	ci right 2.538838e-04	k: 926	n:3890000
KS ci ratio: 7.072641e-03	ci left: 7.293083e-02	ci right 7.344872e-02	k: 284707	n:3890000
ARHGEF12   3890000 perm   6802 sec   (572 perm/sec)   p_kst 7.318946e-02   p_cons 2.380463e-04   p_joint 5.272494e-04

Joint ci ratio: 8.647118e-02	ci left: 5.038889e-04	ci right 5.496785e-04	k: 2053	n:3900000
Cons ci ratio: 1.287344e-01	ci left: 2.223890e-04	ci right 2.532328e-04	k: 926	n:3900000
KS ci ratio: 7.063780e-03	ci left: 7.292709e-02	ci right 7.344431e-02	k: 285423	n:3900000
ARHGEF12   3900000 perm   6834 sec   (571 perm/sec)   p_kst 7.318538e-02   p_cons 2.374359e-04   p_joint 5.264103e-04

Joint ci ratio: 8.626140e-02	ci left: 5.051025e-04	ci right 5.508854e-04	k: 2063	n:3910000
Cons ci ratio: 1.285266e-01	ci left: 2.225628e-04	ci right 2.533771e-04	k: 929	n:3910000
KS ci ratio: 7.055245e-03	ci left: 7.291776e-02	ci right 7.343428e-02	k: 286117	n:3910000
ARHGEF12   3910000 perm   6866 sec   (570 perm/sec)   p_kst 7.317570e-02   p_cons 2.375959e-04   p_joint 5.276215e-04

Joint ci ratio: 8.624056e-02	ci left: 5.040636e-04	ci right 5.497407e-04	k: 2064	n:3920000
Cons ci ratio: 1.284575e-01	ci left: 2.222419e-04	ci right 2.529940e-04	k: 930	n:3920000
KS ci ratio: 7.045998e-03	ci left: 7.292273e-02	ci right 7.343861e-02	k: 286867	n:3920000
ARHGEF12   3920000 perm   6899 sec   (568 perm/sec)   p_kst 7.318036e-02   p_cons 2.372449e-04   p_joint 5.265306e-04

Joint ci ratio: 8.609474e-02	ci left: 5.045238e-04	ci right 5.501614e-04	k: 2071	n:3930000
Cons ci ratio: 1.283198e-01	ci left: 2.221690e-04	ci right 2.528755e-04	k: 932	n:3930000
KS ci ratio: 7.036788e-03	ci left: 7.292769e-02	ci right 7.344292e-02	k: 287617	n:3930000
ARHGEF12   3930000 perm   6931 sec   (567 perm/sec)   p_kst 7.318499e-02   p_cons 2.371501e-04   p_joint 5.269720e-04

Joint ci ratio: 8.615723e-02	ci left: 5.024982e-04	ci right 5.479873e-04	k: 2068	n:3940000
Cons ci ratio: 1.282511e-01	ci left: 2.218507e-04	ci right 2.524957e-04	k: 933	n:3940000
KS ci ratio: 7.027482e-03	ci left: 7.293514e-02	ci right 7.344975e-02	k: 288377	n:3940000
ARHGEF12   3940000 perm   6964 sec   (566 perm/sec)   p_kst 7.319213e-02   p_cons 2.368020e-04   p_joint 5.248731e-04

Joint ci ratio: 8.601183e-02	ci left: 5.029601e-04	ci right 5.484102e-04	k: 2075	n:3950000
Cons ci ratio: 1.280456e-01	ci left: 2.220242e-04	ci right 2.526403e-04	k: 936	n:3950000
KS ci ratio: 7.018659e-03	ci left: 7.293397e-02	ci right 7.344792e-02	k: 289103	n:3950000
ARHGEF12   3950000 perm   6998 sec   (564 perm/sec)   p_kst 7.319063e-02   p_cons 2.369620e-04   p_joint 5.253165e-04

Joint ci ratio: 8.590844e-02	ci left: 5.029254e-04	ci right 5.483151e-04	k: 2080	n:3960000
Cons ci ratio: 1.279092e-01	ci left: 2.219525e-04	ci right 2.525235e-04	k: 938	n:3960000
KS ci ratio: 7.010064e-03	ci left: 7.292903e-02	ci right 7.344230e-02	k: 289814	n:3960000
ARHGEF12   3960000 perm   7031 sec   (563 perm/sec)   p_kst 7.318535e-02   p_cons 2.368687e-04   p_joint 5.252525e-04

Joint ci ratio: 8.584661e-02	ci left: 5.023981e-04	ci right 5.477059e-04	k: 2083	n:3970000
Cons ci ratio: 1.277732e-01	ci left: 2.218811e-04	ci right 2.524073e-04	k: 940	n:3970000
KS ci ratio: 7.002008e-03	ci left: 7.291430e-02	ci right 7.342688e-02	k: 290486	n:3970000
ARHGEF12   3970000 perm   7063 sec   (562 perm/sec)   p_kst 7.317028e-02   p_cons 2.367758e-04   p_joint 5.246851e-04

Joint ci ratio: 8.572329e-02	ci left: 5.026110e-04	ci right 5.478696e-04	k: 2089	n:3980000
Cons ci ratio: 1.275700e-01	ci left: 2.220533e-04	ci right 2.525509e-04	k: 943	n:3980000
KS ci ratio: 6.993034e-03	ci left: 7.291795e-02	ci right 7.342990e-02	k: 291231	n:3980000
ARHGEF12   3980000 perm   7096 sec   (561 perm/sec)   p_kst 7.317362e-02   p_cons 2.369347e-04   p_joint 5.248744e-04

Joint ci ratio: 8.562093e-02	ci left: 5.025776e-04	ci right 5.477765e-04	k: 2094	n:3990000
Cons ci ratio: 1.272334e-01	ci left: 2.227099e-04	ci right 2.532110e-04	k: 948	n:3990000
KS ci ratio: 6.984468e-03	ci left: 7.291434e-02	ci right 7.342563e-02	k: 291947	n:3990000
ARHGEF12   3990000 perm   7131 sec   (560 perm/sec)   p_kst 7.316967e-02   p_cons 2.375940e-04   p_joint 5.248120e-04

Joint ci ratio: 8.549858e-02	ci left: 5.027890e-04	ci right 5.479391e-04	k: 2100	n:4000000
Cons ci ratio: 1.268995e-01	ci left: 2.233634e-04	ci right 2.538677e-04	k: 953	n:4000000
KS ci ratio: 6.975857e-03	ci left: 7.291224e-02	ci right 7.342288e-02	k: 292669	n:4000000
ARHGEF12   4000000 perm   7163 sec   (558 perm/sec)   p_kst 7.316725e-02   p_cons 2.382500e-04   p_joint 5.250000e-04

Joint ci ratio: 8.541732e-02	ci left: 5.025114e-04	ci right 5.475915e-04	k: 2104	n:4010000
Cons ci ratio: 1.266343e-01	ci left: 2.237723e-04	ci right 2.542637e-04	k: 957	n:4010000
KS ci ratio: 6.966970e-03	ci left: 7.291612e-02	ci right 7.342614e-02	k: 293415	n:4010000
ARHGEF12   4010000 perm   7196 sec   (557 perm/sec)   p_kst 7.317082e-02   p_cons 2.386534e-04   p_joint 5.246883e-04

Joint ci ratio: 8.531606e-02	ci left: 5.024786e-04	ci right 5.474997e-04	k: 2109	n:4020000
Cons ci ratio: 1.264365e-01	ci left: 2.239383e-04	ci right 2.544011e-04	k: 960	n:4020000
KS ci ratio: 6.958869e-03	ci left: 7.290533e-02	ci right 7.341468e-02	k: 294102	n:4020000
ARHGEF12   4020000 perm   7232 sec   (556 perm/sec)   p_kst 7.315970e-02   p_cons 2.388060e-04   p_joint 5.246269e-04

Joint ci ratio: 8.106450e-02	ci left: 5.563889e-04	ci right 6.036387e-04	k: 2336	n:4030000
Cons ci ratio: 1.263051e-01	ci left: 2.238632e-04	ci right 2.542818e-04	k: 962	n:4030000
KS ci ratio: 6.949945e-03	ci left: 7.291120e-02	ci right 7.341993e-02	k: 294856	n:4030000
ARHGEF12   4030000 perm   7266 sec   (555 perm/sec)   p_kst 7.316526e-02   p_cons 2.387097e-04   p_joint 5.796526e-04

Joint ci ratio: 8.101254e-02	ci left: 5.557392e-04	ci right 6.029022e-04	k: 2339	n:4040000
Cons ci ratio: 1.261088e-01	ci left: 2.240282e-04	ci right 2.544184e-04	k: 965	n:4040000
KS ci ratio: 6.941258e-03	ci left: 7.291308e-02	ci right 7.342119e-02	k: 295594	n:4040000
ARHGEF12   4040000 perm   7300 sec   (553 perm/sec)   p_kst 7.316683e-02   p_cons 2.388614e-04   p_joint 5.789604e-04

Joint ci ratio: 8.094341e-02	ci left: 5.553346e-04	ci right 6.024212e-04	k: 2343	n:4050000
Cons ci ratio: 1.259135e-01	ci left: 2.241925e-04	ci right 2.545543e-04	k: 968	n:4050000
KS ci ratio: 6.932212e-03	ci left: 7.292260e-02	ci right 7.343011e-02	k: 296363	n:4050000
ARHGEF12   4050000 perm   7333 sec   (552 perm/sec)   p_kst 7.317605e-02   p_cons 2.390123e-04   p_joint 5.785185e-04

Joint ci ratio: 8.084001e-02	ci left: 5.554148e-04	ci right 6.024451e-04	k: 2349	n:4060000
Cons ci ratio: 1.255254e-01	ci left: 2.250716e-04	ci right 2.554516e-04	k: 974	n:4060000
KS ci ratio: 6.924019e-03	ci left: 7.291608e-02	ci right 7.342295e-02	k: 297067	n:4060000
ARHGEF12   4060000 perm   7367 sec   (551 perm/sec)   p_kst 7.316921e-02   p_cons 2.399015e-04   p_joint 5.785714e-04

Joint ci ratio: 8.157272e-02	ci left: 5.439401e-04	ci right 5.904361e-04	k: 2307	n:4070000
Cons ci ratio: 1.254611e-01	ci left: 2.247566e-04	ci right 2.550773e-04	k: 975	n:4070000
KS ci ratio: 6.915078e-03	ci left: 7.292481e-02	ci right 7.343108e-02	k: 297833	n:4070000
ARHGEF12   4070000 perm   7400 sec   (550 perm/sec)   p_kst 7.317764e-02   p_cons 2.395577e-04   p_joint 5.668305e-04

Joint ci ratio: 8.153744e-02	ci left: 5.430871e-04	ci right 5.894892e-04	k: 2309	n:4080000
Cons ci ratio: 1.252687e-01	ci left: 2.249180e-04	ci right 2.552105e-04	k: 978	n:4080000
KS ci ratio: 6.907195e-03	ci left: 7.291343e-02	ci right 7.341904e-02	k: 298517	n:4080000
ARHGEF12   4080000 perm   7434 sec   (549 perm/sec)   p_kst 7.316593e-02   p_cons 2.397059e-04   p_joint 5.659314e-04

Joint ci ratio: 8.143174e-02	ci left: 5.431964e-04	ci right 5.895448e-04	k: 2315	n:4090000
Cons ci ratio: 1.250772e-01	ci left: 2.250786e-04	ci right 2.553429e-04	k: 981	n:4090000
KS ci ratio: 6.898256e-03	ci left: 7.292334e-02	ci right 7.342836e-02	k: 299288	n:4090000
ARHGEF12   4090000 perm   7467 sec   (548 perm/sec)   p_kst 7.317555e-02   p_cons 2.398533e-04   p_joint 5.660147e-04

Joint ci ratio: 8.132646e-02	ci left: 5.433051e-04	ci right 5.896000e-04	k: 2321	n:4100000
Cons ci ratio: 1.248232e-01	ci left: 2.254747e-04	ci right 2.557262e-04	k: 985	n:4100000
KS ci ratio: 6.889687e-03	ci left: 7.292663e-02	ci right 7.343104e-02	k: 300032	n:4100000
ARHGEF12   4100000 perm   7501 sec   (547 perm/sec)   p_kst 7.317854e-02   p_cons 2.402439e-04   p_joint 5.660976e-04

Joint ci ratio: 8.122159e-02	ci left: 5.434134e-04	ci right 5.896550e-04	k: 2327	n:4110000
Cons ci ratio: 1.246968e-01	ci left: 2.253976e-04	ci right 2.556058e-04	k: 987	n:4110000
KS ci ratio: 6.881705e-03	ci left: 7.291897e-02	ci right 7.342275e-02	k: 300731	n:4110000
ARHGEF12   4110000 perm   7535 sec   (545 perm/sec)   p_kst 7.317056e-02   p_cons 2.401460e-04   p_joint 5.661800e-04

Joint ci ratio: 8.109974e-02	ci left: 5.437590e-04	ci right 5.899573e-04	k: 2334	n:4120000
Cons ci ratio: 1.246338e-01	ci left: 2.250856e-04	ci right 2.552357e-04	k: 988	n:4120000
KS ci ratio: 6.873788e-03	ci left: 7.291063e-02	ci right 7.341376e-02	k: 301427	n:4120000
ARHGEF12   4120000 perm   7569 sec   (544 perm/sec)   p_kst 7.316189e-02   p_cons 2.398058e-04   p_joint 5.665049e-04

Joint ci ratio: 8.101306e-02	ci left: 5.436285e-04	ci right 5.897640e-04	k: 2339	n:4130000
Cons ci ratio: 1.246338e-01	ci left: 2.245406e-04	ci right 2.546177e-04	k: 988	n:4130000
KS ci ratio: 6.866143e-03	ci left: 7.289748e-02	ci right 7.339997e-02	k: 302103	n:4130000
ARHGEF12   4130000 perm   7603 sec   (543 perm/sec)   p_kst 7.314843e-02   p_cons 2.392252e-04   p_joint 5.663438e-04

Joint ci ratio: 8.096120e-02	ci left: 5.430254e-04	ci right 5.890788e-04	k: 2342	n:4140000
Cons ci ratio: 1.245709e-01	ci left: 2.242323e-04	ci right 2.542518e-04	k: 989	n:4140000
KS ci ratio: 6.857705e-03	ci left: 7.290056e-02	ci right 7.340245e-02	k: 302846	n:4140000
ARHGEF12   4140000 perm   7637 sec   (542 perm/sec)   p_kst 7.315121e-02   p_cons 2.388889e-04   p_joint 5.657005e-04

Joint ci ratio: 8.090945e-02	ci left: 5.424251e-04	ci right 5.883969e-04	k: 2345	n:4150000
Cons ci ratio: 1.244452e-01	ci left: 2.241589e-04	ci right 2.541361e-04	k: 991	n:4150000
KS ci ratio: 6.849456e-03	ci left: 7.290050e-02	ci right 7.340178e-02	k: 303576	n:4150000
ARHGEF12   4150000 perm   7670 sec   (541 perm/sec)   p_kst 7.315084e-02   p_cons 2.387952e-04   p_joint 5.650602e-04

Joint ci ratio: 8.085779e-02	ci left: 5.418278e-04	ci right 5.877182e-04	k: 2348	n:4160000
Cons ci ratio: 1.243826e-01	ci left: 2.238529e-04	ci right 2.537730e-04	k: 992	n:4160000
KS ci ratio: 6.841261e-03	ci left: 7.289996e-02	ci right 7.340063e-02	k: 304304	n:4160000
ARHGEF12   4160000 perm   7705 sec   (540 perm/sec)   p_kst 7.315000e-02   p_cons 2.384615e-04   p_joint 5.644231e-04

Joint ci ratio: 8.094408e-02	ci left: 5.393536e-04	ci right 5.850855e-04	k: 2343	n:4170000
Cons ci ratio: 1.240084e-01	ci left: 2.247103e-04	ci right 2.546480e-04	k: 998	n:4170000
KS ci ratio: 6.833240e-03	ci left: 7.289655e-02	ci right 7.339661e-02	k: 305020	n:4170000
ARHGEF12   4170000 perm   7740 sec   (539 perm/sec)   p_kst 7.314628e-02   p_cons 2.393285e-04   p_joint 5.618705e-04

Joint ci ratio: 8.082348e-02	ci left: 5.397041e-04	ci right 5.853943e-04	k: 2350	n:4180000
Cons ci ratio: 1.238227e-01	ci left: 2.248681e-04	ci right 2.547787e-04	k: 1001	n:4180000
KS ci ratio: 6.825597e-03	ci left: 7.288623e-02	ci right 7.338565e-02	k: 305707	n:4180000
ARHGEF12   4180000 perm   7775 sec   (538 perm/sec)   p_kst 7.313565e-02   p_cons 2.394737e-04   p_joint 5.622010e-04

Joint ci ratio: 8.073767e-02	ci left: 5.395852e-04	ci right 5.852146e-04	k: 2355	n:4190000
Cons ci ratio: 1.235148e-01	ci left: 2.254879e-04	ci right 2.554008e-04	k: 1006	n:4190000
KS ci ratio: 6.817512e-03	ci left: 7.288525e-02	ci right 7.338408e-02	k: 306433	n:4190000
ARHGEF12   4190000 perm   7813 sec   (536 perm/sec)   p_kst 7.313437e-02   p_cons 2.400955e-04   p_joint 5.620525e-04

Joint ci ratio: 8.066924e-02	ci left: 5.392336e-04	ci right 5.847928e-04	k: 2359	n:4200000
Cons ci ratio: 1.233312e-01	ci left: 2.256432e-04	ci right 2.555291e-04	k: 1009	n:4200000
KS ci ratio: 6.809431e-03	ci left: 7.288475e-02	ci right 7.338298e-02	k: 307161	n:4200000
ARHGEF12   4200000 perm   7847 sec   (535 perm/sec)   p_kst 7.313357e-02   p_cons 2.402381e-04   p_joint 5.616667e-04

Joint ci ratio: 8.082364e-02	ci left: 5.358582e-04	ci right 5.812229e-04	k: 2350	n:4210000
Cons ci ratio: 1.232093e-01	ci left: 2.255677e-04	ci right 2.554118e-04	k: 1011	n:4210000
KS ci ratio: 6.801140e-03	ci left: 7.288900e-02	ci right 7.338665e-02	k: 307909	n:4210000
ARHGEF12   4210000 perm   7882 sec   (534 perm/sec)   p_kst 7.313753e-02   p_cons 2.401425e-04   p_joint 5.581948e-04

Joint ci ratio: 8.078932e-02	ci left: 5.350527e-04	ci right 5.803291e-04	k: 2352	n:4220000
Cons ci ratio: 1.231485e-01	ci left: 2.252628e-04	ci right 2.550508e-04	k: 1012	n:4220000
KS ci ratio: 6.793188e-03	ci left: 7.288708e-02	ci right 7.338413e-02	k: 308631	n:4220000
ARHGEF12   4220000 perm   7917 sec   (533 perm/sec)   p_kst 7.313531e-02   p_cons 2.398104e-04   p_joint 5.573460e-04

Joint ci ratio: 8.065231e-02	ci left: 5.356409e-04	ci right 5.808866e-04	k: 2360	n:4230000
Cons ci ratio: 1.231485e-01	ci left: 2.247303e-04	ci right 2.544479e-04	k: 1012	n:4230000
KS ci ratio: 6.785217e-03	ci left: 7.288611e-02	ci right 7.338256e-02	k: 309357	n:4230000
ARHGEF12   4230000 perm   7953 sec   (532 perm/sec)   p_kst 7.313404e-02   p_cons 2.392435e-04   p_joint 5.579196e-04

Joint ci ratio: 8.058409e-02	ci left: 5.353020e-04	ci right 5.804790e-04	k: 2364	n:4240000
Cons ci ratio: 1.231486e-01	ci left: 2.242002e-04	ci right 2.538478e-04	k: 1012	n:4240000
KS ci ratio: 6.776861e-03	ci left: 7.289338e-02	ci right 7.338928e-02	k: 310118	n:4240000
ARHGEF12   4240000 perm   7988 sec   (531 perm/sec)   p_kst 7.314104e-02   p_cons 2.386792e-04   p_joint 5.575472e-04

Joint ci ratio: 8.041422e-02	ci left: 5.363480e-04	ci right 5.815134e-04	k: 2374	n:4250000
Cons ci ratio: 1.230879e-01	ci left: 2.239007e-04	ci right 2.534930e-04	k: 1013	n:4250000
KS ci ratio: 6.768196e-03	ci left: 7.290744e-02	ci right 7.340279e-02	k: 310908	n:4250000
ARHGEF12   4250000 perm   8022 sec   (530 perm/sec)   p_kst 7.315482e-02   p_cons 2.383529e-04   p_joint 5.585882e-04

Joint ci ratio: 8.029596e-02	ci left: 5.366992e-04	ci right 5.818246e-04	k: 2381	n:4260000
Cons ci ratio: 1.229667e-01	ci left: 2.238302e-04	ci right 2.533819e-04	k: 1015	n:4260000
KS ci ratio: 6.760312e-03	ci left: 7.290643e-02	ci right 7.340119e-02	k: 311634	n:4260000
ARHGEF12   4260000 perm   8057 sec   (529 perm/sec)   p_kst 7.315352e-02   p_cons 2.382629e-04   p_joint 5.589202e-04

Joint ci ratio: 8.019502e-02	ci left: 5.368192e-04	ci right 5.818953e-04	k: 2387	n:4270000
Cons ci ratio: 1.225452e-01	ci left: 2.248950e-04	ci right 2.544782e-04	k: 1022	n:4270000
KS ci ratio: 6.752095e-03	ci left: 7.291267e-02	ci right 7.340688e-02	k: 312391	n:4270000
ARHGEF12   4270000 perm   8092 sec   (528 perm/sec)   p_kst 7.315948e-02   p_cons 2.393443e-04   p_joint 5.590164e-04

Joint ci ratio: 8.011120e-02	ci left: 5.367098e-04	ci right 5.817274e-04	k: 2392	n:4280000
Cons ci ratio: 1.224256e-01	ci left: 2.248225e-04	ci right 2.543652e-04	k: 1024	n:4280000
KS ci ratio: 6.744395e-03	ci left: 7.290909e-02	ci right 7.340270e-02	k: 313106	n:4280000
ARHGEF12   4280000 perm   8127 sec   (527 perm/sec)   p_kst 7.315561e-02   p_cons 2.392523e-04   p_joint 5.588785e-04

Joint ci ratio: 8.002764e-02	ci left: 5.366009e-04	ci right 5.815602e-04	k: 2397	n:4290000
Cons ci ratio: 1.224256e-01	ci left: 2.242985e-04	ci right 2.537723e-04	k: 1024	n:4290000
KS ci ratio: 6.736501e-03	ci left: 7.290994e-02	ci right 7.340299e-02	k: 313840	n:4290000
ARHGEF12   4290000 perm   8162 sec   (526 perm/sec)   p_kst 7.315618e-02   p_cons 2.386946e-04   p_joint 5.587413e-04

Joint ci ratio: 7.992771e-02	ci left: 5.367204e-04	ci right 5.816310e-04	k: 2403	n:4300000
Cons ci ratio: 1.222468e-01	ci left: 2.244532e-04	ci right 2.539011e-04	k: 1027	n:4300000
KS ci ratio: 6.728659e-03	ci left: 7.291033e-02	ci right 7.340280e-02	k: 314572	n:4300000
ARHGEF12   4300000 perm   8198 sec   (525 perm/sec)   p_kst 7.315628e-02   p_cons 2.388372e-04   p_joint 5.588372e-04

Joint ci ratio: 8.001105e-02	ci left: 5.343382e-04	ci right 5.790983e-04	k: 2398	n:4310000
Cons ci ratio: 1.220096e-01	ci left: 2.248321e-04	ci right 2.542684e-04	k: 1031	n:4310000
KS ci ratio: 6.720682e-03	ci left: 7.291396e-02	ci right 7.340587e-02	k: 315318	n:4310000
ARHGEF12   4310000 perm   8233 sec   (524 perm/sec)   p_kst 7.315963e-02   p_cons 2.392111e-04   p_joint 5.563805e-04

Joint ci ratio: 7.991118e-02	ci left: 5.344624e-04	ci right 5.791744e-04	k: 2404	n:4320000
Cons ci ratio: 1.216565e-01	ci left: 2.256582e-04	ci right 2.551110e-04	k: 1037	n:4320000
KS ci ratio: 6.712757e-03	ci left: 7.291711e-02	ci right 7.340846e-02	k: 316062	n:4320000
ARHGEF12   4320000 perm   8268 sec   (523 perm/sec)   p_kst 7.316250e-02   p_cons 2.400463e-04   p_joint 5.564815e-04

Joint ci ratio: 7.982825e-02	ci left: 5.343597e-04	ci right 5.790146e-04	k: 2409	n:4330000
Cons ci ratio: 1.215394e-01	ci left: 2.255849e-04	ci right 2.549978e-04	k: 1039	n:4330000
KS ci ratio: 6.705203e-03	ci left: 7.291333e-02	ci right 7.340410e-02	k: 316776	n:4330000
ARHGEF12   4330000 perm   8307 sec   (521 perm/sec)   p_kst 7.315843e-02   p_cons 2.399538e-04   p_joint 5.563510e-04

Joint ci ratio: 7.976210e-02	ci left: 5.340318e-04	ci right 5.786205e-04	k: 2413	n:4340000
Cons ci ratio: 1.214227e-01	ci left: 2.255120e-04	ci right 2.548851e-04	k: 1041	n:4340000
KS ci ratio: 6.696934e-03	ci left: 7.292452e-02	ci right 7.341476e-02	k: 317555	n:4340000
ARHGEF12   4340000 perm   8342 sec   (520 perm/sec)   p_kst 7.316935e-02   p_cons 2.398618e-04   p_joint 5.559908e-04

Joint ci ratio: 7.966315e-02	ci left: 5.341559e-04	ci right 5.786972e-04	k: 2419	n:4350000
Cons ci ratio: 1.213645e-01	ci left: 2.252165e-04	ci right 2.545360e-04	k: 1042	n:4350000
KS ci ratio: 6.688911e-03	ci left: 7.293130e-02	ci right 7.342099e-02	k: 318315	n:4350000
ARHGEF12   4350000 perm   8378 sec   (519 perm/sec)   p_kst 7.317586e-02   p_cons 2.395402e-04   p_joint 5.560920e-04

Joint ci ratio: 7.961385e-02	ci left: 5.336052e-04	ci right 5.780717e-04	k: 2422	n:4360000
Cons ci ratio: 1.212483e-01	ci left: 2.251447e-04	ci right 2.544248e-04	k: 1044	n:4360000
KS ci ratio: 6.681787e-03	ci left: 7.292042e-02	ci right 7.340951e-02	k: 318998	n:4360000
ARHGEF12   4360000 perm   8414 sec   (518 perm/sec)   p_kst 7.316468e-02   p_cons 2.394495e-04   p_joint 5.555046e-04

Joint ci ratio: 7.953183e-02	ci left: 5.335055e-04	ci right 5.779158e-04	k: 2427	n:4370000
Cons ci ratio: 1.211325e-01	ci left: 2.250733e-04	ci right 2.543141e-04	k: 1046	n:4370000
KS ci ratio: 6.673874e-03	ci left: 7.292603e-02	ci right 7.341458e-02	k: 319753	n:4370000
ARHGEF12   4370000 perm   8450 sec   (517 perm/sec)   p_kst 7.317002e-02   p_cons 2.393593e-04   p_joint 5.553776e-04

Joint ci ratio: 7.941742e-02	ci left: 5.338539e-04	ci right 5.782262e-04	k: 2434	n:4380000
Cons ci ratio: 1.211325e-01	ci left: 2.245594e-04	ci right 2.537335e-04	k: 1046	n:4380000
KS ci ratio: 6.666315e-03	ci left: 7.292501e-02	ci right 7.341300e-02	k: 320479	n:4380000
ARHGEF12   4380000 perm   8485 sec   (516 perm/sec)   p_kst 7.316872e-02   p_cons 2.388128e-04   p_joint 5.557078e-04

Joint ci ratio: 7.927103e-02	ci left: 5.346472e-04	ci right 5.789999e-04	k: 2443	n:4390000
Cons ci ratio: 1.207295e-01	ci left: 2.255942e-04	ci right 2.547983e-04	k: 1053	n:4390000
KS ci ratio: 6.658480e-03	ci left: 7.293014e-02	ci right 7.341758e-02	k: 321232	n:4390000
ARHGEF12   4390000 perm   8525 sec   (515 perm/sec)   p_kst 7.317358e-02   p_cons 2.398633e-04   p_joint 5.564920e-04

Joint ci ratio: 7.914158e-02	ci left: 5.352143e-04	ci right 5.795381e-04	k: 2451	n:4400000
Cons ci ratio: 1.206152e-01	ci left: 2.255223e-04	ci right 2.546874e-04	k: 1055	n:4400000
KS ci ratio: 6.650617e-03	ci left: 7.293637e-02	ci right 7.342328e-02	k: 321990	n:4400000
ARHGEF12   4400000 perm   8561 sec   (514 perm/sec)   p_kst 7.317955e-02   p_cons 2.397727e-04   p_joint 5.570455e-04

Joint ci ratio: 7.907712e-02	ci left: 5.348898e-04	ci right 5.791490e-04	k: 2455	n:4410000
Cons ci ratio: 1.203874e-01	ci left: 2.258906e-04	ci right 2.550443e-04	k: 1059	n:4410000
KS ci ratio: 6.643047e-03	ci left: 7.293715e-02	ci right 7.342350e-02	k: 322724	n:4410000
ARHGEF12   4410000 perm   8598 sec   (513 perm/sec)   p_kst 7.318005e-02   p_cons 2.401361e-04   p_joint 5.566893e-04

Joint ci ratio: 7.909329e-02	ci left: 5.334578e-04	ci right 5.776080e-04	k: 2454	n:4420000
Cons ci ratio: 1.203306e-01	ci left: 2.255990e-04	ci right 2.547003e-04	k: 1060	n:4420000
KS ci ratio: 6.636168e-03	ci left: 7.292436e-02	ci right 7.341013e-02	k: 323398	n:4420000
ARHGEF12   4420000 perm   8633 sec   (512 perm/sec)   p_kst 7.316697e-02   p_cons 2.398190e-04   p_joint 5.552036e-04

Joint ci ratio: 7.899681e-02	ci left: 5.335813e-04	ci right 5.776853e-04	k: 2460	n:4430000
Cons ci ratio: 1.201609e-01	ci left: 2.257466e-04	ci right 2.548229e-04	k: 1063	n:4430000
KS ci ratio: 6.628450e-03	ci left: 7.292922e-02	ci right 7.341445e-02	k: 324150	n:4430000
ARHGEF12   4430000 perm   8670 sec   (511 perm/sec)   p_kst 7.317156e-02   p_cons 2.399549e-04   p_joint 5.553047e-04

Joint ci ratio: 7.888469e-02	ci left: 5.339250e-04	ci right 5.779919e-04	k: 2467	n:4440000
Cons ci ratio: 1.199918e-01	ci left: 2.258935e-04	ci right 2.549449e-04	k: 1066	n:4440000
KS ci ratio: 6.621451e-03	ci left: 7.291989e-02	ci right 7.340454e-02	k: 324839	n:4440000
ARHGEF12   4440000 perm   8706 sec   (510 perm/sec)   p_kst 7.316194e-02   p_cons 2.400901e-04   p_joint 5.556306e-04

Joint ci ratio: 7.896481e-02	ci left: 5.316237e-04	ci right 5.755473e-04	k: 2462	n:4450000
Cons ci ratio: 1.198795e-01	ci left: 2.258218e-04	ci right 2.548350e-04	k: 1068	n:4450000
KS ci ratio: 6.613751e-03	ci left: 7.292541e-02	ci right 7.340953e-02	k: 325594	n:4450000
ARHGEF12   4450000 perm   8743 sec   (509 perm/sec)   p_kst 7.316719e-02   p_cons 2.400000e-04   p_joint 5.532584e-04

Joint ci ratio: 7.882090e-02	ci left: 5.324098e-04	ci right 5.763145e-04	k: 2471	n:4460000
Cons ci ratio: 1.196558e-01	ci left: 2.261855e-04	ci right 2.551873e-04	k: 1072	n:4460000
KS ci ratio: 6.605859e-03	ci left: 7.293538e-02	ci right 7.341899e-02	k: 326369	n:4460000
ARHGEF12   4460000 perm   8780 sec   (508 perm/sec)   p_kst 7.317691e-02   p_cons 2.403587e-04   p_joint 5.540359e-04

Joint ci ratio: 7.874131e-02	ci left: 5.323153e-04	ci right 5.761659e-04	k: 2476	n:4470000
Cons ci ratio: 1.196559e-01	ci left: 2.256795e-04	ci right 2.546164e-04	k: 1072	n:4470000
KS ci ratio: 6.598648e-03	ci left: 7.293190e-02	ci right 7.341496e-02	k: 327084	n:4470000
ARHGEF12   4470000 perm   8817 sec   (507 perm/sec)   p_kst 7.317315e-02   p_cons 2.398210e-04   p_joint 5.539150e-04

Joint ci ratio: 7.864611e-02	ci left: 5.324400e-04	ci right 5.762454e-04	k: 2482	n:4480000
Cons ci ratio: 1.194334e-01	ci left: 2.260419e-04	ci right 2.549676e-04	k: 1076	n:4480000
KS ci ratio: 6.591060e-03	ci left: 7.293669e-02	ci right 7.341922e-02	k: 327836	n:4480000
ARHGEF12   4480000 perm   8854 sec   (506 perm/sec)   p_kst 7.317768e-02   p_cons 2.401786e-04   p_joint 5.540179e-04

Joint ci ratio: 7.935278e-02	ci left: 5.216481e-04	ci right 5.649690e-04	k: 2438	n:4490000
Cons ci ratio: 1.193227e-01	ci left: 2.259706e-04	ci right 2.548585e-04	k: 1078	n:4490000
KS ci ratio: 6.583648e-03	ci left: 7.293834e-02	ci right 7.342034e-02	k: 328574	n:4490000
ARHGEF12   4490000 perm   8892 sec   (505 perm/sec)   p_kst 7.317906e-02   p_cons 2.400891e-04   p_joint 5.429844e-04

Joint ci ratio: 7.922293e-02	ci left: 5.222314e-04	ci right 5.655266e-04	k: 2446	n:4500000
Cons ci ratio: 1.193227e-01	ci left: 2.254685e-04	ci right 2.542921e-04	k: 1078	n:4500000
KS ci ratio: 6.576122e-03	ci left: 7.294287e-02	ci right 7.342435e-02	k: 329325	n:4500000
ARHGEF12   4500000 perm   8929 sec   (504 perm/sec)   p_kst 7.318333e-02   p_cons 2.395556e-04   p_joint 5.435556e-04

Joint ci ratio: 7.928785e-02	ci left: 5.202041e-04	ci right 5.633682e-04	k: 2442	n:4510000
Cons ci ratio: 1.191572e-01	ci left: 2.256139e-04	ci right 2.544133e-04	k: 1081	n:4510000
KS ci ratio: 6.568751e-03	ci left: 7.294472e-02	ci right 7.342567e-02	k: 330064	n:4510000
ARHGEF12   4510000 perm   8965 sec   (503 perm/sec)   p_kst 7.318492e-02   p_cons 2.396896e-04   p_joint 5.414634e-04

Joint ci ratio: 7.917448e-02	ci left: 5.205712e-04	ci right 5.637011e-04	k: 2449	n:4520000
Cons ci ratio: 1.189923e-01	ci left: 2.257587e-04	ci right 2.545339e-04	k: 1084	n:4520000
KS ci ratio: 6.561629e-03	ci left: 7.294193e-02	ci right 7.342233e-02	k: 330782	n:4520000
ARHGEF12   4520000 perm   9002 sec   (502 perm/sec)   p_kst 7.318186e-02   p_cons 2.398230e-04   p_joint 5.418142e-04

Joint ci ratio: 7.910994e-02	ci left: 5.202876e-04	ci right 5.633572e-04	k: 2453	n:4530000
Cons ci ratio: 1.188282e-01	ci left: 2.259029e-04	ci right 2.546540e-04	k: 1087	n:4530000
KS ci ratio: 6.554519e-03	ci left: 7.293937e-02	ci right 7.341923e-02	k: 331501	n:4530000
ARHGEF12   4530000 perm   9039 sec   (501 perm/sec)   p_kst 7.317903e-02   p_cons 2.399558e-04   p_joint 5.415011e-04

Joint ci ratio: 7.899734e-02	ci left: 5.206529e-04	ci right 5.636887e-04	k: 2460	n:4540000
Cons ci ratio: 1.187191e-01	ci left: 2.258327e-04	ci right 2.545467e-04	k: 1089	n:4540000
KS ci ratio: 6.547294e-03	ci left: 7.293968e-02	ci right 7.341902e-02	k: 332233	n:4540000
ARHGEF12   4540000 perm   9076 sec   (500 perm/sec)   p_kst 7.317907e-02   p_cons 2.398678e-04   p_joint 5.418502e-04

Joint ci ratio: 7.888522e-02	ci left: 5.210167e-04	ci right 5.640186e-04	k: 2467	n:4550000
Cons ci ratio: 1.187191e-01	ci left: 2.253364e-04	ci right 2.539872e-04	k: 1089	n:4550000
KS ci ratio: 6.540104e-03	ci left: 7.293977e-02	ci right 7.341858e-02	k: 332964	n:4550000
ARHGEF12   4550000 perm   9114 sec   (499 perm/sec)   p_kst 7.317890e-02   p_cons 2.393407e-04   p_joint 5.421978e-04

Joint ci ratio: 7.974664e-02	ci left: 5.084817e-04	ci right 5.509286e-04	k: 2414	n:4560000
Cons ci ratio: 1.184477e-01	ci left: 2.259062e-04	ci right 2.545592e-04	k: 1094	n:4560000
KS ci ratio: 6.532853e-03	ci left: 7.294161e-02	ci right 7.341990e-02	k: 333703	n:4560000
ARHGEF12   4560000 perm   9153 sec   (498 perm/sec)   p_kst 7.318048e-02   p_cons 2.399123e-04   p_joint 5.293860e-04

Joint ci ratio: 7.966422e-02	ci left: 5.084414e-04	ci right 5.508390e-04	k: 2419	n:4570000
Cons ci ratio: 1.183397e-01	ci left: 2.258366e-04	ci right 2.544528e-04	k: 1096	n:4570000
KS ci ratio: 6.525710e-03	ci left: 7.294169e-02	ci right 7.341946e-02	k: 334434	n:4570000
ARHGEF12   4570000 perm   9190 sec   (497 perm/sec)   p_kst 7.318031e-02   p_cons 2.398249e-04   p_joint 5.293217e-04

Joint ci ratio: 7.989583e-02	ci left: 5.043354e-04	ci right 5.465186e-04	k: 2405	n:4580000
Cons ci ratio: 1.181782e-01	ci left: 2.259791e-04	ci right 2.545716e-04	k: 1099	n:4580000
KS ci ratio: 6.518380e-03	ci left: 7.294614e-02	ci right 7.342340e-02	k: 335185	n:4580000
ARHGEF12   4580000 perm   9227 sec   (496 perm/sec)   p_kst 7.318450e-02   p_cons 2.399563e-04   p_joint 5.251092e-04

Joint ci ratio: 7.979639e-02	ci left: 5.045177e-04	ci right 5.466612e-04	k: 2411	n:4590000
Cons ci ratio: 1.180710e-01	ci left: 2.259096e-04	ci right 2.544656e-04	k: 1101	n:4590000
KS ci ratio: 6.511253e-03	ci left: 7.294687e-02	ci right 7.342360e-02	k: 335919	n:4590000
ARHGEF12   4590000 perm   9264 sec   (495 perm/sec)   p_kst 7.318497e-02   p_cons 2.398693e-04   p_joint 5.252723e-04

Joint ci ratio: 7.973031e-02	ci left: 5.042732e-04	ci right 5.463597e-04	k: 2415	n:4600000
Cons ci ratio: 1.179640e-01	ci left: 2.258405e-04	ci right 2.543600e-04	k: 1103	n:4600000
KS ci ratio: 6.503743e-03	ci left: 7.295606e-02	ci right 7.343230e-02	k: 336692	n:4600000
ARHGEF12   4600000 perm   9302 sec   (495 perm/sec)   p_kst 7.319391e-02   p_cons 2.397826e-04   p_joint 5.250000e-04

Joint ci ratio: 7.966440e-02	ci left: 5.040297e-04	ci right 5.460595e-04	k: 2419	n:4610000
Cons ci ratio: 1.179106e-01	ci left: 2.255611e-04	ci right 2.540316e-04	k: 1104	n:4610000
KS ci ratio: 6.496363e-03	ci left: 7.296305e-02	ci right 7.343879e-02	k: 337455	n:4610000
ARHGEF12   4610000 perm   9343 sec   (493 perm/sec)   p_kst 7.320065e-02   p_cons 2.394794e-04   p_joint 5.247289e-04

Joint ci ratio: 7.961509e-02	ci left: 5.035751e-04	ci right 5.455398e-04	k: 2422	n:4620000
Cons ci ratio: 1.179106e-01	ci left: 2.250729e-04	ci right 2.534817e-04	k: 1104	n:4620000
KS ci ratio: 6.489597e-03	ci left: 7.295768e-02	ci right 7.343290e-02	k: 338161	n:4620000
ARHGEF12   4620000 perm   9381 sec   (492 perm/sec)   p_kst 7.319502e-02   p_cons 2.389610e-04   p_joint 5.242424e-04

Joint ci ratio: 7.954947e-02	ci left: 5.033342e-04	ci right 5.452427e-04	k: 2426	n:4630000
Cons ci ratio: 1.176978e-01	ci left: 2.254252e-04	ci right 2.538236e-04	k: 1108	n:4630000
KS ci ratio: 6.482317e-03	ci left: 7.296356e-02	ci right 7.343827e-02	k: 338919	n:4630000
ARHGEF12   4630000 perm   9419 sec   (492 perm/sec)   p_kst 7.320065e-02   p_cons 2.393089e-04   p_joint 5.239741e-04

Joint ci ratio: 7.950037e-02	ci left: 5.028831e-04	ci right 5.447270e-04	k: 2429	n:4640000
Cons ci ratio: 1.175389e-01	ci left: 2.255669e-04	ci right 2.539422e-04	k: 1111	n:4640000
KS ci ratio: 6.475389e-03	ci left: 7.296252e-02	ci right 7.343672e-02	k: 339645	n:4640000
ARHGEF12   4640000 perm   9457 sec   (491 perm/sec)   p_kst 7.319935e-02   p_cons 2.394397e-04   p_joint 5.234914e-04

Joint ci ratio: 7.498901e-02	ci left: 5.652843e-04	ci right 6.095350e-04	k: 2730	n:4650000
Cons ci ratio: 1.172755e-01	ci left: 2.261255e-04	ci right 2.545029e-04	k: 1116	n:4650000
KS ci ratio: 6.468402e-03	ci left: 7.296320e-02	ci right 7.343690e-02	k: 340379	n:4650000
ARHGEF12   4650000 perm   9497 sec   (490 perm/sec)   p_kst 7.319978e-02   p_cons 2.400000e-04   p_joint 5.870968e-04

Joint ci ratio: 7.525143e-02	ci left: 5.600705e-04	ci right 6.040732e-04	k: 2711	n:4660000
Cons ci ratio: 1.171183e-01	ci left: 2.262652e-04	ci right 2.546194e-04	k: 1119	n:4660000
KS ci ratio: 6.461887e-03	ci left: 7.295446e-02	ci right 7.342762e-02	k: 341069	n:4660000
ARHGEF12   4660000 perm   9536 sec   (489 perm/sec)   p_kst 7.319077e-02   p_cons 2.401288e-04   p_joint 5.817597e-04

Joint ci ratio: 7.519601e-02	ci left: 5.597116e-04	ci right 6.036523e-04	k: 2715	n:4670000
Cons ci ratio: 1.168058e-01	ci left: 2.270279e-04	ci right 2.553965e-04	k: 1125	n:4670000
KS ci ratio: 6.454862e-03	ci left: 7.295687e-02	ci right 7.342953e-02	k: 341811	n:4670000
ARHGEF12   4670000 perm   9573 sec   (488 perm/sec)   p_kst 7.319293e-02   p_cons 2.408994e-04   p_joint 5.813704e-04

Joint ci ratio: 7.509929e-02	ci left: 5.599833e-04	ci right 6.038863e-04	k: 2722	n:4680000
Cons ci ratio: 1.165989e-01	ci left: 2.273725e-04	ci right 2.557304e-04	k: 1129	n:4680000
KS ci ratio: 6.448226e-03	ci left: 7.295159e-02	ci right 7.342372e-02	k: 342517	n:4680000
ARHGEF12   4680000 perm   9612 sec   (487 perm/sec)   p_kst 7.318739e-02   p_cons 2.412393e-04   p_joint 5.816239e-04

Joint ci ratio: 7.515459e-02	ci left: 5.579524e-04	ci right 6.017298e-04	k: 2718	n:4690000
Cons ci ratio: 1.163930e-01	ci left: 2.277158e-04	ci right 2.560629e-04	k: 1133	n:4690000
KS ci ratio: 6.441225e-03	ci left: 7.295442e-02	ci right 7.342606e-02	k: 343261	n:4690000
ARHGEF12   4690000 perm   9651 sec   (486 perm/sec)   p_kst 7.318998e-02   p_cons 2.415778e-04   p_joint 5.795309e-04

Joint ci ratio: 7.507180e-02	ci left: 5.580179e-04	ci right 6.017501e-04	k: 2724	n:4700000
Cons ci ratio: 1.162905e-01	ci left: 2.276444e-04	ci right 2.559560e-04	k: 1135	n:4700000
KS ci ratio: 6.434308e-03	ci left: 7.295597e-02	ci right 7.342711e-02	k: 343999	n:4700000
ARHGEF12   4700000 perm   9690 sec   (485 perm/sec)   p_kst 7.319128e-02   p_cons 2.414894e-04   p_joint 5.795745e-04

Joint ci ratio: 7.498929e-02	ci left: 5.580831e-04	ci right 6.017703e-04	k: 2730	n:4710000
Cons ci ratio: 1.162394e-01	ci left: 2.273672e-04	ci right 2.556310e-04	k: 1136	n:4710000
KS ci ratio: 6.427835e-03	ci left: 7.294861e-02	ci right 7.341922e-02	k: 344695	n:4710000
ARHGEF12   4710000 perm   9729 sec   (484 perm/sec)   p_kst 7.318365e-02   p_cons 2.411890e-04   p_joint 5.796178e-04

Joint ci ratio: 7.487968e-02	ci left: 5.585639e-04	ci right 6.022220e-04	k: 2738	n:4720000
Cons ci ratio: 1.161373e-01	ci left: 2.272969e-04	ci right 2.555255e-04	k: 1138	n:4720000
KS ci ratio: 6.420599e-03	ci left: 7.295777e-02	ci right 7.342792e-02	k: 345469	n:4720000
ARHGEF12   4720000 perm   9768 sec   (483 perm/sec)   p_kst 7.319258e-02   p_cons 2.411017e-04   p_joint 5.800847e-04

Joint ci ratio: 7.477054e-02	ci left: 5.590427e-04	ci right 6.026718e-04	k: 2746	n:4730000
Cons ci ratio: 1.159847e-01	ci left: 2.274322e-04	ci right 2.556379e-04	k: 1141	n:4730000
KS ci ratio: 6.413838e-03	ci left: 7.295740e-02	ci right 7.342705e-02	k: 346198	n:4730000
ARHGEF12   4730000 perm   9806 sec   (482 perm/sec)   p_kst 7.319197e-02   p_cons 2.412262e-04   p_joint 5.805497e-04

Joint ci ratio: 7.467545e-02	ci left: 5.593125e-04	ci right 6.029047e-04	k: 2753	n:4740000
Cons ci ratio: 1.157820e-01	ci left: 2.277718e-04	ci right 2.559669e-04	k: 1145	n:4740000
KS ci ratio: 6.407098e-03	ci left: 7.295704e-02	ci right 7.342618e-02	k: 346927	n:4740000
ARHGEF12   4740000 perm   9845 sec   (481 perm/sec)   p_kst 7.319135e-02   p_cons 2.415612e-04   p_joint 5.808017e-04

Joint ci ratio: 7.460776e-02	ci left: 5.591680e-04	ci right 6.027077e-04	k: 2758	n:4750000
Cons ci ratio: 1.157821e-01	ci left: 2.272923e-04	ci right 2.554280e-04	k: 1145	n:4750000
KS ci ratio: 6.399773e-03	ci left: 7.296949e-02	ci right 7.343818e-02	k: 347717	n:4750000
ARHGEF12   4750000 perm   9885 sec   (481 perm/sec)   p_kst 7.320358e-02   p_cons 2.410526e-04   p_joint 5.806316e-04

Joint ci ratio: 7.458076e-02	ci left: 5.584056e-04	ci right 6.018695e-04	k: 2760	n:4760000
Cons ci ratio: 1.157316e-01	ci left: 2.270188e-04	ci right 2.551076e-04	k: 1146	n:4760000
KS ci ratio: 6.393097e-03	ci left: 7.296868e-02	ci right 7.343688e-02	k: 348444	n:4760000
ARHGEF12   4760000 perm   9924 sec   (480 perm/sec)   p_kst 7.320252e-02   p_cons 2.407563e-04   p_joint 5.798319e-04

Joint ci ratio: 7.512731e-02	ci left: 5.490060e-04	ci right 5.920652e-04	k: 2720	n:4770000
Cons ci ratio: 1.154801e-01	ci left: 2.275608e-04	ci right 2.556513e-04	k: 1151	n:4770000
KS ci ratio: 6.386639e-03	ci left: 7.296369e-02	ci right 7.343138e-02	k: 349151	n:4770000
ARHGEF12   4770000 perm   9963 sec   (479 perm/sec)   p_kst 7.319727e-02   p_cons 2.412998e-04   p_joint 5.702306e-04

Joint ci ratio: 7.518267e-02	ci left: 5.470364e-04	ci right 5.899740e-04	k: 2716	n:4780000
Cons ci ratio: 1.153301e-01	ci left: 2.276942e-04	ci right 2.557622e-04	k: 1154	n:4780000
KS ci ratio: 6.379886e-03	ci left: 7.296540e-02	ci right 7.343260e-02	k: 349890	n:4780000
ARHGEF12   4780000 perm   10004 sec   (478 perm/sec)   p_kst 7.319874e-02   p_cons 2.414226e-04   p_joint 5.682008e-04

Joint ci ratio: 7.515504e-02	ci left: 5.463040e-04	ci right 5.891678e-04	k: 2718	n:4790000
Cons ci ratio: 1.153301e-01	ci left: 2.272189e-04	ci right 2.552282e-04	k: 1154	n:4790000
KS ci ratio: 6.373546e-03	ci left: 7.295877e-02	ci right 7.342546e-02	k: 350589	n:4790000
ARHGEF12   4790000 perm   10043 sec   (477 perm/sec)   p_kst 7.319186e-02   p_cons 2.409186e-04   p_joint 5.674322e-04

Joint ci ratio: 7.507225e-02	ci left: 5.463924e-04	ci right 5.892138e-04	k: 2724	n:4800000
Cons ci ratio: 1.152304e-01	ci left: 2.271502e-04	ci right 2.551252e-04	k: 1156	n:4800000
KS ci ratio: 6.367098e-03	ci left: 7.295487e-02	ci right 7.342106e-02	k: 351301	n:4800000
ARHGEF12   4800000 perm   10082 sec   (476 perm/sec)   p_kst 7.318771e-02   p_cons 2.408333e-04   p_joint 5.675000e-04

Joint ci ratio: 7.498974e-02	ci left: 5.464804e-04	ci right 5.892596e-04	k: 2730	n:4810000
Cons ci ratio: 1.151309e-01	ci left: 2.270817e-04	ci right 2.550226e-04	k: 1158	n:4810000
KS ci ratio: 6.360534e-03	ci left: 7.295389e-02	ci right 7.341960e-02	k: 352027	n:4810000
ARHGEF12   4810000 perm   10122 sec   (475 perm/sec)   p_kst 7.318649e-02   p_cons 2.407484e-04   p_joint 5.675676e-04

Joint ci ratio: 7.490750e-02	ci left: 5.465682e-04	ci right 5.893052e-04	k: 2736	n:4820000
Cons ci ratio: 1.149327e-01	ci left: 2.274166e-04	ci right 2.553472e-04	k: 1162	n:4820000
KS ci ratio: 6.353931e-03	ci left: 7.295416e-02	ci right 7.341938e-02	k: 352759	n:4820000
ARHGEF12   4820000 perm   10162 sec   (474 perm/sec)   p_kst 7.318651e-02   p_cons 2.410788e-04   p_joint 5.676349e-04

Joint ci ratio: 7.468942e-02	ci left: 5.486872e-04	ci right 5.914597e-04	k: 2752	n:4830000
Cons ci ratio: 1.148340e-01	ci left: 2.273479e-04	ci right 2.552445e-04	k: 1164	n:4830000
KS ci ratio: 6.347736e-03	ci left: 7.294616e-02	ci right 7.341087e-02	k: 353451	n:4830000
ARHGEF12   4830000 perm   10202 sec   (473 perm/sec)   p_kst 7.317826e-02   p_cons 2.409938e-04   p_joint 5.697723e-04

Joint ci ratio: 7.340670e-02	ci left: 5.672240e-04	ci right 6.106498e-04	k: 2849	n:4840000
Cons ci ratio: 1.146865e-01	ci left: 2.274803e-04	ci right 2.553548e-04	k: 1167	n:4840000
KS ci ratio: 6.341724e-03	ci left: 7.293468e-02	ci right 7.339888e-02	k: 354126	n:4840000
ARHGEF12   4840000 perm   10241 sec   (473 perm/sec)   p_kst 7.316653e-02   p_cons 2.411157e-04   p_joint 5.886364e-04

Joint ci ratio: 7.361379e-02	ci left: 5.628161e-04	ci right 6.060311e-04	k: 2833	n:4850000
Cons ci ratio: 1.145395e-01	ci left: 2.276121e-04	ci right 2.554645e-04	k: 1170	n:4850000
KS ci ratio: 6.335131e-03	ci left: 7.293602e-02	ci right 7.339975e-02	k: 354863	n:4850000
ARHGEF12   4850000 perm   10281 sec   (472 perm/sec)   p_kst 7.316763e-02   p_cons 2.412371e-04   p_joint 5.841237e-04

Joint ci ratio: 7.351009e-02	ci left: 5.632739e-04	ci right 6.064605e-04	k: 2841	n:4860000
Cons ci ratio: 1.143443e-01	ci left: 2.279432e-04	ci right 2.557855e-04	k: 1174	n:4860000
KS ci ratio: 6.328761e-03	ci left: 7.293304e-02	ci right 7.339628e-02	k: 355579	n:4860000
ARHGEF12   4860000 perm   10321 sec   (471 perm/sec)   p_kst 7.316440e-02   p_cons 2.415638e-04   p_joint 5.845679e-04

Joint ci ratio: 7.343262e-02	ci left: 5.633267e-04	ci right 6.064699e-04	k: 2847	n:4870000
Cons ci ratio: 1.141018e-01	ci left: 2.284725e-04	ci right 2.563163e-04	k: 1179	n:4870000
KS ci ratio: 6.322141e-03	ci left: 7.293581e-02	ci right 7.339858e-02	k: 356323	n:4870000
ARHGEF12   4870000 perm   10361 sec   (470 perm/sec)   p_kst 7.316694e-02   p_cons 2.420945e-04   p_joint 5.845996e-04

Joint ci ratio: 7.334253e-02	ci left: 5.635804e-04	ci right 6.066879e-04	k: 2854	n:4880000
Cons ci ratio: 1.139570e-01	ci left: 2.286016e-04	ci right 2.564233e-04	k: 1182	n:4880000
KS ci ratio: 6.315944e-03	ci left: 7.292998e-02	ci right 7.339225e-02	k: 357025	n:4880000
ARHGEF12   4880000 perm   10400 sec   (469 perm/sec)   p_kst 7.316086e-02   p_cons 2.422131e-04   p_joint 5.848361e-04

Joint ci ratio: 7.326558e-02	ci left: 5.636324e-04	ci right 6.066967e-04	k: 2860	n:4890000
Cons ci ratio: 1.139089e-01	ci left: 2.283327e-04	ci right 2.561092e-04	k: 1183	n:4890000
KS ci ratio: 6.309279e-03	ci left: 7.293458e-02	ci right 7.339640e-02	k: 357778	n:4890000
ARHGEF12   4890000 perm   10440 sec   (468 perm/sec)   p_kst 7.316524e-02   p_cons 2.419223e-04   p_joint 5.848671e-04

Joint ci ratio: 7.325282e-02	ci left: 5.626825e-04	ci right 6.056663e-04	k: 2861	n:4900000
Cons ci ratio: 1.137648e-01	ci left: 2.284616e-04	ci right 2.562162e-04	k: 1186	n:4900000
KS ci ratio: 6.302758e-03	ci left: 7.293652e-02	ci right 7.339787e-02	k: 358518	n:4900000
ARHGEF12   4900000 perm   10480 sec   (468 perm/sec)   p_kst 7.316694e-02   p_cons 2.420408e-04   p_joint 5.838776e-04

Joint ci ratio: 7.318892e-02	ci left: 5.625362e-04	ci right 6.054698e-04	k: 2866	n:4910000
Cons ci ratio: 1.136691e-01	ci left: 2.283920e-04	ci right 2.561133e-04	k: 1188	n:4910000
KS ci ratio: 6.296598e-03	ci left: 7.293112e-02	ci right 7.339199e-02	k: 359222	n:4910000
ARHGEF12   4910000 perm   10520 sec   (467 perm/sec)   p_kst 7.316130e-02   p_cons 2.419552e-04   p_joint 5.837067e-04

Joint ci ratio: 7.312519e-02	ci left: 5.623905e-04	ci right 6.052740e-04	k: 2871	n:4920000
Cons ci ratio: 1.136214e-01	ci left: 2.281253e-04	ci right 2.558018e-04	k: 1189	n:4920000
KS ci ratio: 6.290098e-03	ci left: 7.293347e-02	ci right 7.339387e-02	k: 359964	n:4920000
ARHGEF12   4920000 perm   10562 sec   (466 perm/sec)   p_kst 7.316341e-02   p_cons 2.416667e-04   p_joint 5.835366e-04

Joint ci ratio: 7.318901e-02	ci left: 5.602540e-04	ci right 6.030135e-04	k: 2866	n:4930000
Cons ci ratio: 1.134784e-01	ci left: 2.282538e-04	ci right 2.559087e-04	k: 1192	n:4930000
KS ci ratio: 6.283806e-03	ci left: 7.293175e-02	ci right 7.339167e-02	k: 360686	n:4930000
ARHGEF12   4930000 perm   10601 sec   (465 perm/sec)   p_kst 7.316146e-02   p_cons 2.417850e-04   p_joint 5.813387e-04

Joint ci ratio: 7.313802e-02	ci left: 5.599148e-04	ci right 6.026174e-04	k: 2870	n:4940000
Cons ci ratio: 1.134309e-01	ci left: 2.279884e-04	ci right 2.555989e-04	k: 1193	n:4940000
KS ci ratio: 6.277720e-03	ci left: 7.292599e-02	ci right 7.338544e-02	k: 361388	n:4940000
ARHGEF12   4940000 perm   10641 sec   (464 perm/sec)   p_kst 7.315547e-02   p_cons 2.414980e-04   p_joint 5.809717e-04

Joint ci ratio: 7.326584e-02	ci left: 5.568004e-04	ci right 5.993428e-04	k: 2860	n:4950000
Cons ci ratio: 1.134309e-01	ci left: 2.275278e-04	ci right 2.550825e-04	k: 1193	n:4950000
KS ci ratio: 6.271428e-03	ci left: 7.292510e-02	ci right 7.338408e-02	k: 362114	n:4950000
ARHGEF12   4950000 perm   10682 sec   (463 perm/sec)   p_kst 7.315434e-02   p_cons 2.410101e-04   p_joint 5.777778e-04

Joint ci ratio: 7.317637e-02	ci left: 5.570633e-04	ci right 5.995716e-04	k: 2867	n:4960000
Cons ci ratio: 1.132414e-01	ci left: 2.278527e-04	ci right 2.553975e-04	k: 1197	n:4960000
KS ci ratio: 6.265508e-03	ci left: 7.291657e-02	ci right 7.337506e-02	k: 362802	n:4960000
ARHGEF12   4960000 perm   10723 sec   (463 perm/sec)   p_kst 7.314556e-02   p_cons 2.413306e-04   p_joint 5.780242e-04

Joint ci ratio: 7.309994e-02	ci left: 5.571276e-04	ci right 5.995946e-04	k: 2873	n:4970000
Cons ci ratio: 1.130999e-01	ci left: 2.279808e-04	ci right 2.555044e-04	k: 1200	n:4970000
KS ci ratio: 6.259345e-03	ci left: 7.291369e-02	ci right 7.337171e-02	k: 363518	n:4970000
ARHGEF12   4970000 perm   10764 sec   (462 perm/sec)   p_kst 7.314245e-02   p_cons 2.414487e-04   p_joint 5.780684e-04

Joint ci ratio: 7.298573e-02	ci left: 5.577831e-04	ci right 6.002308e-04	k: 2882	n:4980000
Cons ci ratio: 1.129589e-01	ci left: 2.281084e-04	ci right 2.556107e-04	k: 1203	n:4980000
KS ci ratio: 6.252682e-03	ci left: 7.292206e-02	ci right 7.337964e-02	k: 364290	n:4980000
ARHGEF12   4980000 perm   10805 sec   (461 perm/sec)   p_kst 7.315060e-02   p_cons 2.415663e-04   p_joint 5.787149e-04

Joint ci ratio: 6.971158e-02	ci left: 6.111871e-04	ci right 6.555280e-04	k: 3159	n:4990000
Cons ci ratio: 1.128652e-01	ci left: 2.280407e-04	ci right 2.555106e-04	k: 1205	n:4990000
KS ci ratio: 6.246649e-03	ci left: 7.291719e-02	ci right 7.337429e-02	k: 364996	n:4990000
ARHGEF12   4990000 perm   10846 sec   (460 perm/sec)   p_kst 7.314549e-02   p_cons 2.414830e-04   p_joint 6.330661e-04

Joint ci ratio: 6.842371e-02	ci left: 6.335505e-04	ci right 6.786310e-04	k: 3279	n:5000000
Cons ci ratio: 1.128184e-01	ci left: 2.277790e-04	ci right 2.552052e-04	k: 1206	n:5000000
KS ci ratio: 6.240358e-03	ci left: 7.291832e-02	ci right 7.337497e-02	k: 365732	n:5000000
ARHGEF12   5000000 perm   10886 sec   (459 perm/sec)   p_kst 7.314640e-02   p_cons 2.412000e-04   p_joint 6.558000e-04

Outputting figure to mutsig2_images.part000000000010/ARHGEF12.9_4799_5000000_0.073146_0.0002412_0.0006558.png
                gene_name: ARHGEF12
               theta_stop: 0.11 
                    nperm: 5000000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.00024 
      ci_cons_bounds_left: 0.00023 
     ci_cons_bounds_right: 0.00026 
                  p_joint: 0.00066 
     ci_joint_bounds_left: 0.00063 
    ci_joint_bounds_right: 0.00068 

Current progress: 21 percent done.
ARAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.189849e-02	ci left: 9.100826e-01	ci right 9.210739e-01	k: 9157	n:10000
Cons ci ratio: 2.260159e-02	ci left: 7.418966e-01	ci right 7.589573e-01	k: 7505	n:10000
KS ci ratio: 2.524022e-02	ci left: 6.978692e-01	ci right 7.158101e-01	k: 7069	n:10000
ARAP3   10000 perm   2 sec   (4232 perm/sec)   p_kst 7.069000e-01   p_cons 7.505000e-01   p_joint 9.157000e-01

Outputting figure to mutsig2_images.part000000000010/ARAP3.8_4763_10000_0.7069_0.7505_0.9157.png
                gene_name: ARAP3
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 22 percent done.
ARFGEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.125513e-02	ci left: 6.016648e-01	ci right 6.208704e-01	k: 6113	n:10000
Cons ci ratio: 2.465674e-02	ci left: 7.075543e-01	ci right 7.253194e-01	k: 7165	n:10000
KS ci ratio: 3.906893e-02	ci left: 4.917510e-01	ci right 5.114481e-01	k: 5016	n:10000
ARFGEF2   10000 perm   2 sec   (4237 perm/sec)   p_kst 5.016000e-01   p_cons 7.165000e-01   p_joint 6.113000e-01

Outputting figure to mutsig2_images.part000000000010/ARFGEF2.8_5514_10000_0.5016_0.7165_0.6113.png
                gene_name: ARFGEF2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 24 percent done.
ARHGAP28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.310919e-01	ci left: 6.437624e-03	ci right 1.005764e-02	k: 81	n:10000
Cons ci ratio: 1.566850e-01	ci left: 5.426821e-02	ci right 6.359080e-02	k: 588	n:10000
KS ci ratio: 5.585987e-01	ci left: 3.541199e-03	ci right 6.359123e-03	k: 48	n:10000
ARHGAP28   10000 perm   2 sec   (5232 perm/sec)   p_kst 4.800000e-03   p_cons 5.880000e-02   p_joint 8.100000e-03

Joint ci ratio: 2.289106e-01	ci left: 1.279482e-02	ci right 1.614852e-02	k: 288	n:20000
Cons ci ratio: 1.098571e-01	ci left: 5.655298e-02	ci right 6.317570e-02	k: 1196	n:20000
KS ci ratio: 3.833774e-01	ci left: 4.205484e-03	ci right 6.242447e-03	k: 103	n:20000
ARHGAP28   20000 perm   4 sec   (4732 perm/sec)   p_kst 5.150000e-03   p_cons 5.980000e-02   p_joint 1.440000e-02

Joint ci ratio: 2.327460e-01	ci left: 8.276287e-03	ci right 1.048696e-02	k: 280	n:30000
Cons ci ratio: 8.928937e-02	ci left: 5.766500e-02	ci right 6.308720e-02	k: 1810	n:30000
KS ci ratio: 3.258763e-01	ci left: 4.018883e-03	ci right 5.612681e-03	k: 143	n:30000
ARHGAP28   30000 perm   7 sec   (4539 perm/sec)   p_kst 4.766667e-03   p_cons 6.033333e-02   p_joint 9.333333e-03

Joint ci ratio: 2.168913e-01	ci left: 7.221300e-03	ci right 9.001222e-03	k: 323	n:40000
Cons ci ratio: 7.788939e-02	ci left: 5.722586e-02	ci right 6.188834e-02	k: 2381	n:40000
KS ci ratio: 2.764886e-01	ci left: 4.309143e-03	ci right 5.714198e-03	k: 199	n:40000
ARHGAP28   40000 perm   9 sec   (4419 perm/sec)   p_kst 4.975000e-03   p_cons 5.952500e-02   p_joint 8.075000e-03

Joint ci ratio: 2.916503e-01	ci left: 3.075488e-03	ci right 4.143422e-03	k: 179	n:50000
Cons ci ratio: 7.008674e-02	ci left: 5.681265e-02	ci right 6.095875e-02	k: 2943	n:50000
KS ci ratio: 2.498228e-01	ci left: 4.288075e-03	ci right 5.530478e-03	k: 244	n:50000
ARHGAP28   50000 perm   12 sec   (4312 perm/sec)   p_kst 4.880000e-03   p_cons 5.886000e-02   p_joint 3.580000e-03

Joint ci ratio: 2.637992e-01	ci left: 3.183279e-03	ci right 4.165693e-03	k: 219	n:60000
Cons ci ratio: 6.420066e-02	ci left: 5.661879e-02	ci right 6.039072e-02	k: 3509	n:60000
KS ci ratio: 2.268959e-01	ci left: 4.388437e-03	ci right 5.526926e-03	k: 296	n:60000
ARHGAP28   60000 perm   14 sec   (4192 perm/sec)   p_kst 4.933333e-03   p_cons 5.848333e-02   p_joint 3.650000e-03

Joint ci ratio: 1.308580e-01	ci left: 1.182829e-02	ci right 1.349818e-02	k: 885	n:70000
Cons ci ratio: 5.923120e-02	ci left: 5.713888e-02	ci right 6.064065e-02	k: 4121	n:70000
KS ci ratio: 2.136579e-01	ci left: 4.274417e-03	ci right 5.310147e-03	k: 334	n:70000
ARHGAP28   70000 perm   17 sec   (4126 perm/sec)   p_kst 4.771429e-03   p_cons 5.887143e-02   p_joint 1.264286e-02

Joint ci ratio: 1.284219e-01	ci left: 1.077268e-02	ci right 1.226306e-02	k: 920	n:80000
Cons ci ratio: 5.531758e-02	ci left: 5.742635e-02	ci right 6.070572e-02	k: 4724	n:80000
KS ci ratio: 2.019517e-01	ci left: 4.214097e-03	ci right 5.172367e-03	k: 374	n:80000
ARHGAP28   80000 perm   20 sec   (4060 perm/sec)   p_kst 4.675000e-03   p_cons 5.905000e-02   p_joint 1.150000e-02

Joint ci ratio: 1.227128e-01	ci left: 1.052271e-02	ci right 1.190907e-02	k: 1008	n:90000
Cons ci ratio: 5.222512e-02	ci left: 5.737052e-02	ci right 6.045799e-02	k: 5301	n:90000
KS ci ratio: 1.941060e-01	ci left: 4.073205e-03	ci right 4.959198e-03	k: 405	n:90000
ARHGAP28   90000 perm   23 sec   (3918 perm/sec)   p_kst 4.500000e-03   p_cons 5.890000e-02   p_joint 1.120000e-02

Joint ci ratio: 1.206854e-01	ci left: 9.809560e-03	ci right 1.107908e-02	k: 1043	n:100000
Cons ci ratio: 4.952329e-02	ci left: 5.749800e-02	ci right 6.042765e-02	k: 5895	n:100000
KS ci ratio: 1.860419e-01	ci left: 4.008746e-03	ci right 4.840402e-03	k: 441	n:100000
ARHGAP28   100000 perm   26 sec   (3868 perm/sec)   p_kst 4.410000e-03   p_cons 5.895000e-02   p_joint 1.043000e-02

Joint ci ratio: 1.279274e-01	ci left: 7.921921e-03	ci right 9.013323e-03	k: 930	n:110000
Cons ci ratio: 4.708991e-02	ci left: 5.786639e-02	ci right 6.066599e-02	k: 6518	n:110000
KS ci ratio: 1.781587e-01	ci left: 3.991377e-03	ci right 4.780560e-03	k: 481	n:110000
ARHGAP28   110000 perm   29 sec   (3822 perm/sec)   p_kst 4.372727e-03   p_cons 5.925455e-02   p_joint 8.454545e-03

Joint ci ratio: 1.101614e-01	ci left: 9.866122e-03	ci right 1.102439e-02	k: 1252	n:120000
Cons ci ratio: 4.513794e-02	ci left: 5.779703e-02	ci right 6.047433e-02	k: 7095	n:120000
KS ci ratio: 1.720289e-01	ci left: 3.937639e-03	ci right 4.686628e-03	k: 516	n:120000
ARHGAP28   120000 perm   32 sec   (3771 perm/sec)   p_kst 4.300000e-03   p_cons 5.912500e-02   p_joint 1.043333e-02

Joint ci ratio: 1.081759e-01	ci left: 9.458748e-03	ci right 1.054789e-02	k: 1299	n:130000
Cons ci ratio: 4.328442e-02	ci left: 5.806017e-02	ci right 6.063645e-02	k: 7714	n:130000
KS ci ratio: 1.669472e-01	ci left: 3.870445e-03	ci right 4.582718e-03	k: 548	n:130000
ARHGAP28   130000 perm   35 sec   (3723 perm/sec)   p_kst 4.215385e-03   p_cons 5.933846e-02   p_joint 9.992308e-03

Joint ci ratio: 1.074253e-01	ci left: 8.915043e-03	ci right 9.934002e-03	k: 1318	n:140000
Cons ci ratio: 4.166585e-02	ci left: 5.822398e-02	ci right 6.070859e-02	k: 8324	n:140000
KS ci ratio: 1.604974e-01	ci left: 3.902252e-03	ci right 4.589959e-03	k: 593	n:140000
ARHGAP28   140000 perm   38 sec   (3674 perm/sec)   p_kst 4.235714e-03   p_cons 5.945714e-02   p_joint 9.414286e-03

Joint ci ratio: 1.037907e-01	ci left: 8.930825e-03	ci right 9.914944e-03	k: 1412	n:150000
Cons ci ratio: 4.030987e-02	ci left: 5.810995e-02	ci right 6.050712e-02	k: 8895	n:150000
KS ci ratio: 1.551077e-01	ci left: 3.911048e-03	ci right 4.575007e-03	k: 635	n:150000
ARHGAP28   150000 perm   41 sec   (3626 perm/sec)   p_kst 4.233333e-03   p_cons 5.930000e-02   p_joint 9.413333e-03

Joint ci ratio: 1.055692e-01	ci left: 8.092490e-03	ci right 9.000453e-03	k: 1366	n:160000
Cons ci ratio: 3.902346e-02	ci left: 5.816616e-02	ci right 6.048734e-02	k: 9491	n:160000
KS ci ratio: 1.504499e-01	ci left: 3.907050e-03	ci right 4.548619e-03	k: 675	n:160000
ARHGAP28   160000 perm   45 sec   (3579 perm/sec)   p_kst 4.218750e-03   p_cons 5.931875e-02   p_joint 8.537500e-03

Joint ci ratio: 1.335663e-01	ci left: 4.704352e-03	ci right 5.383285e-03	k: 856	n:170000
Cons ci ratio: 3.785484e-02	ci left: 5.821100e-02	ci right 6.046288e-02	k: 10086	n:170000
KS ci ratio: 1.454756e-01	ci left: 3.943466e-03	ci right 4.567744e-03	k: 722	n:170000
ARHGAP28   170000 perm   48 sec   (3533 perm/sec)   p_kst 4.247059e-03   p_cons 5.932941e-02   p_joint 5.035294e-03

Joint ci ratio: 1.295460e-01	ci left: 4.733131e-03	ci right 5.394075e-03	k: 910	n:180000
Cons ci ratio: 3.677430e-02	ci left: 5.828482e-02	ci right 6.047384e-02	k: 10687	n:180000
KS ci ratio: 1.413333e-01	ci left: 3.954704e-03	ci right 4.561433e-03	k: 765	n:180000
ARHGAP28   180000 perm   52 sec   (3488 perm/sec)   p_kst 4.250000e-03   p_cons 5.937222e-02   p_joint 5.055556e-03

Joint ci ratio: 1.359319e-01	ci left: 4.061578e-03	ci right 4.658963e-03	k: 827	n:190000
Cons ci ratio: 3.583703e-02	ci left: 5.817947e-02	ci right 6.030768e-02	k: 11255	n:190000
KS ci ratio: 1.378685e-01	ci left: 3.944655e-03	ci right 4.533787e-03	k: 804	n:190000
ARHGAP28   190000 perm   55 sec   (3445 perm/sec)   p_kst 4.231579e-03   p_cons 5.923684e-02   p_joint 4.352632e-03

Joint ci ratio: 1.324579e-01	ci left: 4.071115e-03	ci right 4.653395e-03	k: 871	n:200000
Cons ci ratio: 3.500414e-02	ci left: 5.797125e-02	ci right 6.004156e-02	k: 11800	n:200000
KS ci ratio: 1.343273e-01	ci left: 3.955103e-03	ci right 4.529412e-03	k: 847	n:200000
ARHGAP28   200000 perm   59 sec   (3401 perm/sec)   p_kst 4.235000e-03   p_cons 5.900000e-02   p_joint 4.355000e-03

Joint ci ratio: 1.289549e-01	ci left: 4.098354e-03	ci right 4.667841e-03	k: 919	n:210000
Cons ci ratio: 3.415037e-02	ci left: 5.802901e-02	ci right 6.004985e-02	k: 12397	n:210000
KS ci ratio: 1.308247e-01	ci left: 3.978551e-03	ci right 4.540030e-03	k: 893	n:210000
ARHGAP28   210000 perm   63 sec   (3357 perm/sec)   p_kst 4.252381e-03   p_cons 5.903333e-02   p_joint 4.376190e-03

Joint ci ratio: 1.281313e-01	ci left: 3.964839e-03	ci right 4.511987e-03	k: 931	n:220000
Cons ci ratio: 3.338074e-02	ci left: 5.800091e-02	ci right 5.997437e-02	k: 12976	n:220000
KS ci ratio: 1.285475e-01	ci left: 3.938438e-03	ci right 4.483843e-03	k: 925	n:220000
ARHGAP28   220000 perm   66 sec   (3312 perm/sec)   p_kst 4.204545e-03   p_cons 5.898182e-02   p_joint 4.231818e-03

Joint ci ratio: 1.312921e-01	ci left: 3.607313e-03	ci right 4.118359e-03	k: 887	n:230000
Cons ci ratio: 3.269809e-02	ci left: 5.785060e-02	ci right 5.977793e-02	k: 13526	n:230000
KS ci ratio: 1.252094e-01	ci left: 3.977699e-03	ci right 4.513174e-03	k: 975	n:230000
ARHGAP28   230000 perm   70 sec   (3273 perm/sec)   p_kst 4.239130e-03   p_cons 5.880870e-02   p_joint 3.856522e-03

Joint ci ratio: 1.339005e-01	ci left: 3.320007e-03	ci right 3.800438e-03	k: 853	n:240000
Cons ci ratio: 3.197371e-02	ci left: 5.799440e-02	ci right 5.988293e-02	k: 14144	n:240000
KS ci ratio: 1.223582e-01	ci left: 3.997696e-03	ci right 4.522721e-03	k: 1021	n:240000
ARHGAP28   240000 perm   74 sec   (3233 perm/sec)   p_kst 4.254167e-03   p_cons 5.893333e-02   p_joint 3.554167e-03

Joint ci ratio: 1.173440e-01	ci left: 4.183142e-03	ci right 4.708449e-03	k: 1110	n:250000
Cons ci ratio: 3.132362e-02	ci left: 5.802787e-02	ci right 5.987837e-02	k: 14737	n:250000
KS ci ratio: 1.201461e-01	ci left: 3.985176e-03	ci right 4.498422e-03	k: 1059	n:250000
ARHGAP28   250000 perm   78 sec   (3194 perm/sec)   p_kst 4.236000e-03   p_cons 5.894800e-02   p_joint 4.440000e-03

Joint ci ratio: 1.168273e-01	ci left: 4.059572e-03	ci right 4.566960e-03	k: 1120	n:260000
Cons ci ratio: 3.071696e-02	ci left: 5.804002e-02	ci right 5.985444e-02	k: 15325	n:260000
KS ci ratio: 1.177272e-01	ci left: 3.996097e-03	ci right 4.499668e-03	k: 1103	n:260000
ARHGAP28   260000 perm   82 sec   (3156 perm/sec)   p_kst 4.242308e-03   p_cons 5.894231e-02   p_joint 4.307692e-03

Joint ci ratio: 1.188221e-01	ci left: 3.776186e-03	ci right 4.256779e-03	k: 1083	n:270000
Cons ci ratio: 3.015530e-02	ci left: 5.801115e-02	ci right 5.979093e-02	k: 15902	n:270000
KS ci ratio: 1.152975e-01	ci left: 4.017097e-03	ci right 4.512155e-03	k: 1150	n:270000
ARHGAP28   270000 perm   87 sec   (3119 perm/sec)   p_kst 4.259259e-03   p_cons 5.889630e-02   p_joint 4.011111e-03

Joint ci ratio: 1.062337e-01	ci left: 4.582116e-03	ci right 5.099644e-03	k: 1354	n:280000
Cons ci ratio: 2.957098e-02	ci left: 5.817968e-02	ci right 5.992946e-02	k: 16534	n:280000
KS ci ratio: 1.130597e-01	ci left: 4.033225e-03	ci right 4.519980e-03	k: 1196	n:280000
ARHGAP28   280000 perm   91 sec   (3082 perm/sec)   p_kst 4.271429e-03   p_cons 5.905000e-02   p_joint 4.835714e-03

Joint ci ratio: 9.344947e-02	ci left: 5.749094e-03	ci right 6.316018e-03	k: 1748	n:290000
Cons ci ratio: 2.734445e-02	ci left: 6.527029e-02	ci right 6.708322e-02	k: 19190	n:290000
KS ci ratio: 1.113077e-01	ci left: 4.021505e-03	ci right 4.498831e-03	k: 1234	n:290000
ARHGAP28   290000 perm   95 sec   (3046 perm/sec)   p_kst 4.255172e-03   p_cons 6.617241e-02   p_joint 6.027586e-03

Joint ci ratio: 9.343206e-02	ci left: 5.560688e-03	ci right 6.108925e-03	k: 1749	n:300000
Cons ci ratio: 2.692026e-02	ci left: 6.512402e-02	ci right 6.690438e-02	k: 19803	n:300000
KS ci ratio: 1.096779e-01	ci left: 4.007378e-03	ci right 4.475612e-03	k: 1271	n:300000
ARHGAP28   300000 perm   100 sec   (3011 perm/sec)   p_kst 4.236667e-03   p_cons 6.601000e-02   p_joint 5.830000e-03

Joint ci ratio: 9.379190e-02	ci left: 5.340328e-03	ci right 5.868978e-03	k: 1736	n:310000
Cons ci ratio: 2.647498e-02	ci left: 6.517333e-02	ci right 6.692512e-02	k: 20474	n:310000
KS ci ratio: 1.079935e-01	ci left: 4.003627e-03	ci right 4.463782e-03	k: 1311	n:310000
ARHGAP28   310000 perm   104 sec   (2978 perm/sec)   p_kst 4.229032e-03   p_cons 6.604516e-02   p_joint 5.600000e-03

Joint ci ratio: 9.260169e-02	ci left: 5.310787e-03	ci right 5.829479e-03	k: 1781	n:320000
Cons ci ratio: 2.604318e-02	ci left: 6.525706e-02	ci right 6.698206e-02	k: 21157	n:320000
KS ci ratio: 1.063448e-01	ci left: 4.003204e-03	ci right 4.455847e-03	k: 1352	n:320000
ARHGAP28   320000 perm   109 sec   (2934 perm/sec)   p_kst 4.225000e-03   p_cons 6.611562e-02   p_joint 5.565625e-03

Joint ci ratio: 9.095638e-02	ci left: 5.342306e-03	ci right 5.854313e-03	k: 1846	n:330000
Cons ci ratio: 2.562304e-02	ci left: 6.537810e-02	ci right 6.707801e-02	k: 21854	n:330000
KS ci ratio: 1.048072e-01	ci left: 3.999906e-03	ci right 4.445233e-03	k: 1392	n:330000
ARHGAP28   330000 perm   114 sec   (2894 perm/sec)   p_kst 4.218182e-03   p_cons 6.622424e-02   p_joint 5.593939e-03

Joint ci ratio: 9.184298e-02	ci left: 5.084561e-03	ci right 5.576870e-03	k: 1811	n:340000
Cons ci ratio: 2.525380e-02	ci left: 6.534019e-02	ci right 6.701428e-02	k: 22499	n:340000
KS ci ratio: 1.033707e-01	ci left: 3.993980e-03	ci right 4.432183e-03	k: 1431	n:340000
ARHGAP28   340000 perm   119 sec   (2865 perm/sec)   p_kst 4.208824e-03   p_cons 6.617353e-02   p_joint 5.326471e-03

Joint ci ratio: 9.520916e-02	ci left: 4.590439e-03	ci right 5.052103e-03	k: 1686	n:350000
Cons ci ratio: 2.490583e-02	ci left: 6.527620e-02	ci right 6.692528e-02	k: 23134	n:350000
KS ci ratio: 1.017834e-01	ci left: 4.005141e-03	ci right 4.437417e-03	k: 1476	n:350000
ARHGAP28   350000 perm   123 sec   (2837 perm/sec)   p_kst 4.217143e-03   p_cons 6.609714e-02   p_joint 4.817143e-03

Joint ci ratio: 9.443141e-02	ci left: 4.538855e-03	ci right 4.991396e-03	k: 1714	n:360000
Cons ci ratio: 2.455416e-02	ci left: 6.530430e-02	ci right 6.693047e-02	k: 23801	n:360000
KS ci ratio: 1.001350e-01	ci left: 4.026563e-03	ci right 4.453700e-03	k: 1525	n:360000
ARHGAP28   360000 perm   129 sec   (2789 perm/sec)   p_kst 4.236111e-03   p_cons 6.611389e-02   p_joint 4.761111e-03

Joint ci ratio: 9.340353e-02	ci left: 4.516471e-03	ci right 4.961610e-03	k: 1752	n:370000
Cons ci ratio: 2.423290e-02	ci left: 6.525042e-02	ci right 6.685368e-02	k: 24438	n:370000
KS ci ratio: 9.878483e-02	ci left: 4.028427e-03	ci right 4.449665e-03	k: 1567	n:370000
ARHGAP28   370000 perm   134 sec   (2762 perm/sec)   p_kst 4.235135e-03   p_cons 6.604865e-02   p_joint 4.735135e-03

Outputting figure to mutsig2_images.part000000000010/ARHGAP28.8_1920_370000_0.0042351_0.066049_0.0047351.png
                gene_name: ARHGAP28
               theta_stop: 0.099 
                    nperm: 370000 
                     p_ks: 0.0042 
        ci_ks_bounds_left: 0.0040 
       ci_ks_bounds_right: 0.0044 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.0047 
     ci_joint_bounds_left: 0.0045 
    ci_joint_bounds_right: 0.0050 

Current progress: 25 percent done.
ARHGAP29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.121080e-02	ci left: 1.487429e-01	ci right 1.630582e-01	k: 1558	n:10000
Cons ci ratio: 5.450658e-02	ci left: 3.315077e-01	ci right 3.501851e-01	k: 3408	n:10000
KS ci ratio: 1.036624e-01	ci left: 1.185779e-01	ci right 1.316413e-01	k: 1250	n:10000
ARHGAP29   10000 perm   2 sec   (4713 perm/sec)   p_kst 1.250000e-01   p_cons 3.408000e-01   p_joint 1.558000e-01

Joint ci ratio: 5.307420e-02	ci left: 2.085805e-01	ci right 2.200027e-01	k: 4285	n:20000
Cons ci ratio: 3.804129e-02	ci left: 3.401517e-01	ci right 3.533929e-01	k: 6935	n:20000
KS ci ratio: 7.633143e-02	ci left: 1.120355e-01	ci right 1.209763e-01	k: 2329	n:20000
ARHGAP29   20000 perm   5 sec   (4237 perm/sec)   p_kst 1.164500e-01   p_cons 3.467500e-01   p_joint 2.142500e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP29.8_3874_20000_0.11645_0.34675_0.21425.png
                gene_name: ARHGAP29
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 27 percent done.
ARHGAP31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.113846e-01	ci left: 1.040292e-01	ci right 1.163989e-01	k: 1101	n:10000
Cons ci ratio: 1.227189e-02	ci left: 9.050431e-01	ci right 9.163163e-01	k: 9108	n:10000
KS ci ratio: 1.694391e-01	ci left: 4.648153e-02	ci right 5.518251e-02	k: 507	n:10000
ARHGAP31   10000 perm   2 sec   (4671 perm/sec)   p_kst 5.070000e-02   p_cons 9.108000e-01   p_joint 1.101000e-01

Joint ci ratio: 7.687393e-02	ci left: 1.106099e-01	ci right 1.195024e-01	k: 2300	n:20000
Cons ci ratio: 8.387342e-03	ci left: 9.122230e-01	ci right 9.199555e-01	k: 18323	n:20000
KS ci ratio: 1.196283e-01	ci left: 4.789434e-02	ci right 5.403704e-02	k: 1018	n:20000
ARHGAP31   20000 perm   5 sec   (4259 perm/sec)   p_kst 5.090000e-02   p_cons 9.161500e-01   p_joint 1.150000e-01

Joint ci ratio: 6.639330e-02	ci left: 1.006332e-01	ci right 1.075770e-01	k: 3122	n:30000
Cons ci ratio: 7.100917e-03	ci left: 9.071116e-01	ci right 9.136087e-01	k: 27312	n:30000
KS ci ratio: 9.722523e-02	ci left: 4.889563e-02	ci right 5.392503e-02	k: 1541	n:30000
ARHGAP31   30000 perm   7 sec   (4083 perm/sec)   p_kst 5.136667e-02   p_cons 9.104000e-01   p_joint 1.040667e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP31.8_4383_30000_0.051367_0.9104_0.10407.png
                gene_name: ARHGAP31
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 28 percent done.
ARHGEF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.386945e-02	ci left: 7.206775e-01	ci right 7.381887e-01	k: 7295	n:10000
Cons ci ratio: 4.629413e-02	ci left: 4.078097e-01	ci right 4.272384e-01	k: 4175	n:10000
KS ci ratio: 2.352500e-02	ci left: 7.264344e-01	ci right 7.438284e-01	k: 7352	n:10000
ARHGEF7   10000 perm   2 sec   (4931 perm/sec)   p_kst 7.352000e-01   p_cons 4.175000e-01   p_joint 7.295000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF7.8_2782_10000_0.7352_0.4175_0.7295.png
                gene_name: ARHGEF7
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 30 percent done.
AQR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.109680e-02	ci left: 3.609240e-01	ci right 3.799515e-01	k: 3704	n:10000
Cons ci ratio: 3.365594e-02	ci left: 5.658420e-01	ci right 5.853140e-01	k: 5756	n:10000
KS ci ratio: 7.333963e-02	ci left: 2.139851e-01	ci right 2.303771e-01	k: 2221	n:10000
AQR   10000 perm   2 sec   (4519 perm/sec)   p_kst 2.221000e-01   p_cons 5.756000e-01   p_joint 3.704000e-01

Outputting figure to mutsig2_images.part000000000010/AQR.7_4598_10000_0.2221_0.5756_0.3704.png
                gene_name: AQR
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 31 percent done.
ARHGAP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.949312e-02	ci left: 6.289944e-01	ci right 6.479249e-01	k: 6385	n:10000
Cons ci ratio: 2.257745e-02	ci left: 7.423010e-01	ci right 7.593527e-01	k: 7509	n:10000
KS ci ratio: 4.414416e-02	ci left: 4.310375e-01	ci right 4.505970e-01	k: 4408	n:10000
ARHGAP15   10000 perm   2 sec   (5373 perm/sec)   p_kst 4.408000e-01   p_cons 7.509000e-01   p_joint 6.385000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP15.7_1480_10000_0.4408_0.7509_0.6385.png
                gene_name: ARHGAP15
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 33 percent done.
ARHGAP27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.477092e-02	ci left: 5.498039e-01	ci right 5.693614e-01	k: 5596	n:10000
KS ci ratio: 7.989211e-03	ci left: 9.561821e-01	ci right 9.639469e-01	k: 9602	n:10000
ARHGAP27   10000 perm   2 sec   (4982 perm/sec)   p_kst 9.602000e-01   p_cons 5.596000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARHGAP27.7_1711_10000_0.9602_0.5596_1.png
                gene_name: ARHGAP27
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
ARHGAP33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.280928e-02	ci left: 5.782787e-01	ci right 5.976700e-01	k: 5880	n:10000
Cons ci ratio: 5.821045e-02	ci left: 3.028259e-01	ci right 3.210837e-01	k: 3119	n:10000
KS ci ratio: 2.289722e-02	ci left: 7.369431e-01	ci right 7.541136e-01	k: 7456	n:10000
ARHGAP33   10000 perm   2 sec   (4111 perm/sec)   p_kst 7.456000e-01   p_cons 3.119000e-01   p_joint 5.880000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP33.7_3948_10000_0.7456_0.3119_0.588.png
                gene_name: ARHGAP33
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 36 percent done.
ARHGAP36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.935912e-02	ci left: 6.311057e-01	ci right 6.500123e-01	k: 6406	n:10000
Cons ci ratio: 2.055178e-02	ci left: 7.762076e-01	ci right 7.924264e-01	k: 7844	n:10000
KS ci ratio: 4.371700e-02	ci left: 4.358254e-01	ci right 4.554063e-01	k: 4456	n:10000
ARHGAP36   10000 perm   2 sec   (4919 perm/sec)   p_kst 4.456000e-01   p_cons 7.844000e-01   p_joint 6.406000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP36.7_1688_10000_0.4456_0.7844_0.6406.png
                gene_name: ARHGAP36
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 37 percent done.
ARHGAP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.818818e-02	ci left: 5.031509e-01	ci right 5.228415e-01	k: 5130	n:10000
Cons ci ratio: 6.289034e-02	ci left: 2.709178e-01	ci right 2.886106e-01	k: 2797	n:10000
KS ci ratio: 2.046065e-02	ci left: 7.777276e-01	ci right 7.939056e-01	k: 7859	n:10000
ARHGAP9   10000 perm   2 sec   (5345 perm/sec)   p_kst 7.859000e-01   p_cons 2.797000e-01   p_joint 5.130000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP9.7_2264_10000_0.7859_0.2797_0.513.png
                gene_name: ARHGAP9
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 39 percent done.
ARHGEF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.116972e-02	ci left: 6.029702e-01	ci right 6.221641e-01	k: 6126	n:10000
Cons ci ratio: 5.063989e-02	ci left: 3.651011e-01	ci right 3.841720e-01	k: 3746	n:10000
KS ci ratio: 2.596067e-02	ci left: 6.859711e-01	ci right 7.041151e-01	k: 6951	n:10000
ARHGEF5   10000 perm   2 sec   (4367 perm/sec)   p_kst 6.951000e-01   p_cons 3.746000e-01   p_joint 6.126000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF5.7_4850_10000_0.6951_0.3746_0.6126.png
                gene_name: ARHGEF5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 40 percent done.
AR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.286084e-01	ci left: 7.950840e-02	ci right 9.053475e-02	k: 849	n:10000
Cons ci ratio: 2.169949e-01	ci left: 2.816365e-02	ci right 3.511272e-02	k: 315	n:10000
KS ci ratio: 7.939167e-02	ci left: 1.881605e-01	ci right 2.038170e-01	k: 1959	n:10000
AR   10000 perm   2 sec   (5504 perm/sec)   p_kst 1.959000e-01   p_cons 3.150000e-02   p_joint 8.490000e-02

Joint ci ratio: 1.065803e-01	ci left: 5.996397e-02	ci right 6.676366e-02	k: 1266	n:20000
Cons ci ratio: 1.566712e-01	ci left: 2.796788e-02	ci right 3.276994e-02	k: 606	n:20000
KS ci ratio: 5.605908e-02	ci left: 1.909136e-01	ci right 2.019748e-01	k: 3928	n:20000
AR   20000 perm   4 sec   (4895 perm/sec)   p_kst 1.964000e-01   p_cons 3.030000e-02   p_joint 6.330000e-02

Joint ci ratio: 1.062952e-01	ci left: 4.105701e-02	ci right 4.569861e-02	k: 1300	n:30000
Cons ci ratio: 1.286161e-01	ci left: 2.809861e-02	ci right 3.199310e-02	k: 900	n:30000
KS ci ratio: 4.595426e-02	ci left: 1.906949e-01	ci right 1.996976e-01	k: 5855	n:30000
AR   30000 perm   6 sec   (4684 perm/sec)   p_kst 1.951667e-01   p_cons 3.000000e-02   p_joint 4.333333e-02

Joint ci ratio: 6.430618e-02	ci left: 8.226007e-02	ci right 8.775035e-02	k: 3399	n:40000
Cons ci ratio: 1.149527e-01	ci left: 2.662382e-02	ci right 2.989514e-02	k: 1129	n:40000
KS ci ratio: 4.018171e-02	ci left: 1.883237e-01	ci right 1.960710e-01	k: 7687	n:40000
AR   40000 perm   9 sec   (4547 perm/sec)   p_kst 1.921750e-01   p_cons 2.822500e-02   p_joint 8.497500e-02

Joint ci ratio: 6.196841e-02	ci left: 7.179915e-02	ci right 7.641044e-02	k: 3704	n:50000
Cons ci ratio: 1.026116e-01	ci left: 2.690291e-02	ci right 2.983219e-02	k: 1417	n:50000
KS ci ratio: 3.596979e-02	ci left: 1.884761e-01	ci right 1.953997e-01	k: 9596	n:50000
AR   50000 perm   11 sec   (4437 perm/sec)   p_kst 1.919200e-01   p_cons 2.834000e-02   p_joint 7.408000e-02

Joint ci ratio: 5.512290e-02	ci left: 7.558659e-02	ci right 7.988770e-02	k: 4663	n:60000
Cons ci ratio: 9.363168e-02	ci left: 2.705279e-02	ci right 2.972642e-02	k: 1702	n:60000
KS ci ratio: 3.257595e-02	ci left: 1.912400e-01	ci right 1.975896e-01	k: 11664	n:60000
AR   60000 perm   14 sec   (4338 perm/sec)   p_kst 1.944000e-01   p_cons 2.836667e-02   p_joint 7.771667e-02

Outputting figure to mutsig2_images.part000000000010/AR.6_2819_60000_0.1944_0.028367_0.077717.png
                gene_name: AR
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.080 

Current progress: 42 percent done.
ARAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.021741e-01	ci left: 1.217066e-01	ci right 1.349108e-01	k: 1282	n:10000
Cons ci ratio: 3.558940e-02	ci left: 5.382828e-01	ci right 5.578892e-01	k: 5481	n:10000
KS ci ratio: 2.326663e-01	ci left: 2.438298e-02	ci right 3.089610e-02	k: 275	n:10000
ARAP1   10000 perm   2 sec   (4548 perm/sec)   p_kst 2.750000e-02   p_cons 5.481000e-01   p_joint 1.282000e-01

Joint ci ratio: 8.155502e-02	ci left: 9.931124e-02	ci right 1.078044e-01	k: 2070	n:20000
Cons ci ratio: 2.509611e-02	ci left: 5.425727e-01	ci right 5.564129e-01	k: 10990	n:20000
KS ci ratio: 1.670300e-01	ci left: 2.455782e-02	ci right 2.908116e-02	k: 535	n:20000
ARAP1   20000 perm   5 sec   (4269 perm/sec)   p_kst 2.675000e-02   p_cons 5.495000e-01   p_joint 1.035000e-01

Joint ci ratio: 7.398493e-02	ci left: 8.239216e-02	ci right 8.875503e-02	k: 2566	n:30000
Cons ci ratio: 2.045687e-02	ci left: 5.446828e-01	ci right 5.559741e-01	k: 16510	n:30000
KS ci ratio: 1.377061e-01	ci left: 2.448627e-02	ci right 2.813957e-02	k: 788	n:30000
ARAP1   30000 perm   7 sec   (4139 perm/sec)   p_kst 2.626667e-02   p_cons 5.503333e-01   p_joint 8.553333e-02

Joint ci ratio: 6.750341e-02	ci left: 7.511943e-02	ci right 8.039206e-02	k: 3109	n:40000
Cons ci ratio: 1.783329e-02	ci left: 5.421811e-01	ci right 5.519621e-01	k: 21883	n:40000
KS ci ratio: 1.189097e-01	ci left: 2.487510e-02	ci right 2.804415e-02	k: 1057	n:40000
ARAP1   40000 perm   10 sec   (4044 perm/sec)   p_kst 2.642500e-02   p_cons 5.470750e-01   p_joint 7.772500e-02

Joint ci ratio: 7.122482e-02	ci left: 5.508193e-02	ci right 5.916968e-02	k: 2855	n:50000
Cons ci ratio: 1.594473e-02	ci left: 5.428844e-01	ci right 5.516301e-01	k: 27363	n:50000
KS ci ratio: 1.068762e-01	ci left: 2.479801e-02	ci right 2.761736e-02	k: 1309	n:50000
ARAP1   50000 perm   13 sec   (3930 perm/sec)   p_kst 2.618000e-02   p_cons 5.472600e-01   p_joint 5.710000e-02

Joint ci ratio: 6.271483e-02	ci left: 5.921288e-02	ci right 6.306304e-02	k: 3667	n:60000
Cons ci ratio: 1.458083e-02	ci left: 5.424060e-01	ci right 5.503895e-01	k: 32784	n:60000
KS ci ratio: 9.721565e-02	ci left: 2.509925e-02	ci right 2.768017e-02	k: 1582	n:60000
ARAP1   60000 perm   16 sec   (3845 perm/sec)   p_kst 2.636667e-02   p_cons 5.464000e-01   p_joint 6.111667e-02

Outputting figure to mutsig2_images.part000000000010/ARAP1.6_4485_60000_0.026367_0.5464_0.061117.png
                gene_name: ARAP1
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.063 

Current progress: 43 percent done.
ARHGAP25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.123144e-02	ci left: 9.188379e-01	ci right 9.293135e-01	k: 9242	n:10000
KS ci ratio: 2.163580e-02	ci left: 7.580813e-01	ci right 7.747632e-01	k: 7665	n:10000
ARHGAP25   10000 perm   2 sec   (5162 perm/sec)   p_kst 7.665000e-01   p_cons 9.242000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARHGAP25.6_2025_10000_0.7665_0.9242_1.png
                gene_name: ARHGAP25
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
AQP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.102021e-02	ci left: 3.616201e-01	ci right 3.806550e-01	k: 3711	n:10000
Cons ci ratio: 1.040429e-01	ci left: 1.177960e-01	ci right 1.308238e-01	k: 1242	n:10000
KS ci ratio: 2.159954e-02	ci left: 7.586885e-01	ci right 7.753556e-01	k: 7671	n:10000
AQP9   10000 perm   2 sec   (5985 perm/sec)   p_kst 7.671000e-01   p_cons 1.242000e-01   p_joint 3.711000e-01

Joint ci ratio: 3.173228e-02	ci left: 4.258686e-01	ci right 4.396509e-01	k: 8655	n:20000
Cons ci ratio: 7.664826e-02	ci left: 1.111998e-01	ci right 1.201123e-01	k: 2312	n:20000
KS ci ratio: 1.459230e-02	ci left: 7.772213e-01	ci right 7.886963e-01	k: 15660	n:20000
AQP9   20000 perm   4 sec   (5360 perm/sec)   p_kst 7.830000e-01   p_cons 1.156000e-01   p_joint 4.327500e-01

Outputting figure to mutsig2_images.part000000000010/AQP9.5_912_20000_0.783_0.1156_0.43275.png
                gene_name: AQP9
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 46 percent done.
ARFIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.694434e-02	ci left: 8.353127e-01	ci right 8.496872e-01	k: 8426	n:10000
Cons ci ratio: 2.135169e-02	ci left: 7.628386e-01	ci right 7.794031e-01	k: 7712	n:10000
KS ci ratio: 2.253522e-02	ci left: 7.430088e-01	ci right 7.600445e-01	k: 7516	n:10000
ARFIP1   10000 perm   2 sec   (6041 perm/sec)   p_kst 7.516000e-01   p_cons 7.712000e-01   p_joint 8.426000e-01

Outputting figure to mutsig2_images.part000000000010/ARFIP1.5_1154_10000_0.7516_0.7712_0.8426.png
                gene_name: ARFIP1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 48 percent done.
ARG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.234863e-02	ci left: 2.743835e-01	ci right 2.921429e-01	k: 2832	n:10000
Cons ci ratio: 1.044753e-01	ci left: 1.169164e-01	ci right 1.299039e-01	k: 1233	n:10000
KS ci ratio: 8.437554e-03	ci left: 9.515867e-01	ci right 9.597452e-01	k: 9558	n:10000
ARG2   10000 perm   2 sec   (5630 perm/sec)   p_kst 9.558000e-01   p_cons 1.233000e-01   p_joint 2.832000e-01

Joint ci ratio: 4.563509e-02	ci left: 2.633100e-01	ci right 2.756571e-01	k: 5389	n:20000
Cons ci ratio: 7.588973e-02	ci left: 1.132155e-01	ci right 1.221960e-01	k: 2353	n:20000
KS ci ratio: 5.917513e-03	ci left: 9.535294e-01	ci right 9.592370e-01	k: 19129	n:20000
ARG2   20000 perm   4 sec   (5051 perm/sec)   p_kst 9.564500e-01   p_cons 1.176500e-01   p_joint 2.694500e-01

Outputting figure to mutsig2_images.part000000000010/ARG2.5_1097_20000_0.95645_0.11765_0.26945.png
                gene_name: ARG2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 49 percent done.
ARHGAP11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.754382e-02	ci left: 5.116542e-01	ci right 5.313333e-01	k: 5215	n:10000
Cons ci ratio: 3.777008e-02	ci left: 5.086527e-01	ci right 5.283365e-01	k: 5185	n:10000
KS ci ratio: 4.998711e-02	ci left: 3.711691e-01	ci right 3.903004e-01	k: 3807	n:10000
ARHGAP11A   10000 perm   2 sec   (5112 perm/sec)   p_kst 3.807000e-01   p_cons 5.185000e-01   p_joint 5.215000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP11A.5_3143_10000_0.3807_0.5185_0.5215.png
                gene_name: ARHGAP11A
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 51 percent done.
ARHGAP24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.173246e-02	ci left: 7.564621e-01	ci right 7.731834e-01	k: 7649	n:10000
KS ci ratio: 1.812426e-02	ci left: 8.162904e-01	ci right 8.313205e-01	k: 8239	n:10000
ARHGAP24   10000 perm   2 sec   (5136 perm/sec)   p_kst 8.239000e-01   p_cons 7.649000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARHGAP24.5_2399_10000_0.8239_0.7649_1.png
                gene_name: ARHGAP24
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
ARHGAP32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.023188e-02	ci left: 6.174357e-01	ci right 6.364903e-01	k: 6270	n:10000
Cons ci ratio: 6.067200e-02	ci left: 2.854779e-01	ci right 3.034419e-01	k: 2944	n:10000
KS ci ratio: 3.633558e-02	ci left: 5.279684e-01	ci right 5.476096e-01	k: 5378	n:10000
ARHGAP32   10000 perm   2 sec   (4648 perm/sec)   p_kst 5.378000e-01   p_cons 2.944000e-01   p_joint 6.270000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP32.5_6352_10000_0.5378_0.2944_0.627.png
                gene_name: ARHGAP32
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 54 percent done.
ARHGEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.717671e-01	ci left: 4.523448e-02	ci right 5.383036e-02	k: 494	n:10000
Cons ci ratio: 2.417193e-02	ci left: 7.156290e-01	ci right 7.332401e-01	k: 7245	n:10000
KS ci ratio: 3.277720e-01	ci left: 1.178961e-02	ci right 1.649967e-02	k: 140	n:10000
ARHGEF1   10000 perm   2 sec   (4938 perm/sec)   p_kst 1.400000e-02   p_cons 7.245000e-01   p_joint 4.940000e-02

Joint ci ratio: 1.102002e-01	ci left: 5.621205e-02	ci right 6.281674e-02	k: 1189	n:20000
Cons ci ratio: 1.703253e-02	ci left: 7.196605e-01	ci right 7.320738e-01	k: 14518	n:20000
KS ci ratio: 2.364985e-01	ci left: 1.194666e-02	ci right 1.519704e-02	k: 270	n:20000
ARHGEF1   20000 perm   4 sec   (4477 perm/sec)   p_kst 1.350000e-02   p_cons 7.259000e-01   p_joint 5.945000e-02

Joint ci ratio: 1.085382e-01	ci left: 3.940081e-02	ci right 4.395516e-02	k: 1249	n:30000
Cons ci ratio: 1.432362e-02	ci left: 7.088493e-01	ci right 7.191093e-01	k: 21420	n:30000
KS ci ratio: 1.925026e-01	ci left: 1.231996e-02	ci right 1.497546e-02	k: 408	n:30000
ARHGEF1   30000 perm   7 sec   (4322 perm/sec)   p_kst 1.360000e-02   p_cons 7.140000e-01   p_joint 4.163333e-02

Joint ci ratio: 1.163915e-01	ci left: 2.596784e-02	ci right 2.920123e-02	k: 1102	n:40000
Cons ci ratio: 1.204166e-02	ci left: 7.215753e-01	ci right 7.303419e-01	k: 29039	n:40000
KS ci ratio: 1.706141e-01	ci left: 1.191290e-02	ci right 1.415862e-02	k: 520	n:40000
ARHGEF1   40000 perm   10 sec   (4207 perm/sec)   p_kst 1.300000e-02   p_cons 7.259750e-01   p_joint 2.755000e-02

Joint ci ratio: 1.038621e-01	ci left: 2.625950e-02	ci right 2.915568e-02	k: 1384	n:50000
Cons ci ratio: 1.073509e-02	ci left: 7.233532e-01	ci right 7.311804e-01	k: 36364	n:50000
KS ci ratio: 1.512260e-01	ci left: 1.225646e-02	ci right 1.428063e-02	k: 662	n:50000
ARHGEF1   50000 perm   12 sec   (4127 perm/sec)   p_kst 1.324000e-02   p_cons 7.272800e-01   p_joint 2.768000e-02

Joint ci ratio: 8.949703e-02	ci left: 2.959497e-02	ci right 3.238397e-02	k: 1858	n:60000
Cons ci ratio: 9.806679e-03	ci left: 7.234161e-01	ci right 7.305620e-01	k: 43620	n:60000
KS ci ratio: 1.403565e-01	ci left: 1.193192e-02	ci right 1.374899e-02	k: 769	n:60000
ARHGEF1   60000 perm   15 sec   (4044 perm/sec)   p_kst 1.281667e-02   p_cons 7.270000e-01   p_joint 3.096667e-02

Joint ci ratio: 8.930725e-02	ci left: 2.558818e-02	ci right 2.799412e-02	k: 1874	n:70000
Cons ci ratio: 9.064200e-03	ci left: 7.243428e-01	ci right 7.309526e-01	k: 50936	n:70000
KS ci ratio: 1.313846e-01	ci left: 1.173153e-02	ci right 1.339495e-02	k: 878	n:70000
ARHGEF1   70000 perm   18 sec   (3978 perm/sec)   p_kst 1.254286e-02   p_cons 7.276571e-01   p_joint 2.677143e-02

Joint ci ratio: 8.720135e-02	ci left: 2.356208e-02	ci right 2.572258e-02	k: 1970	n:80000
Cons ci ratio: 8.474930e-03	ci left: 7.247389e-01	ci right 7.309196e-01	k: 58227	n:80000
KS ci ratio: 1.244497e-01	ci left: 1.148712e-02	ci right 1.302356e-02	k: 979	n:80000
ARHGEF1   80000 perm   20 sec   (3907 perm/sec)   p_kst 1.223750e-02   p_cons 7.278375e-01   p_joint 2.462500e-02

Joint ci ratio: 7.504815e-02	ci left: 2.831692e-02	ci right 3.053577e-02	k: 2647	n:90000
Cons ci ratio: 7.985623e-03	ci left: 7.251468e-01	ci right 7.309718e-01	k: 65526	n:90000
KS ci ratio: 1.172517e-01	ci left: 1.154694e-02	ci right 1.299586e-02	k: 1103	n:90000
ARHGEF1   90000 perm   23 sec   (3844 perm/sec)   p_kst 1.225556e-02   p_cons 7.280667e-01   p_joint 2.941111e-02

Joint ci ratio: 7.171624e-02	ci left: 2.796862e-02	ci right 3.005882e-02	k: 2900	n:100000
Cons ci ratio: 7.570601e-03	ci left: 7.255715e-01	ci right 7.310953e-01	k: 72834	n:100000
KS ci ratio: 1.112654e-01	ci left: 1.157740e-02	ci right 1.295110e-02	k: 1225	n:100000
ARHGEF1   100000 perm   26 sec   (3789 perm/sec)   p_kst 1.225000e-02   p_cons 7.283400e-01   p_joint 2.900000e-02

Joint ci ratio: 6.976558e-02	ci left: 2.692576e-02	ci right 2.888105e-02	k: 3068	n:110000
Cons ci ratio: 7.225815e-03	ci left: 7.252868e-01	ci right 7.305557e-01	k: 80072	n:110000
KS ci ratio: 1.060317e-01	ci left: 1.162157e-02	ci right 1.293160e-02	k: 1349	n:110000
ARHGEF1   110000 perm   29 sec   (3736 perm/sec)   p_kst 1.226364e-02   p_cons 7.279273e-01   p_joint 2.789091e-02

Joint ci ratio: 6.712621e-02	ci left: 2.670495e-02	ci right 2.856797e-02	k: 3315	n:120000
Cons ci ratio: 6.922017e-03	ci left: 7.251801e-01	ci right 7.302255e-01	k: 87325	n:120000
KS ci ratio: 1.009888e-01	ci left: 1.177339e-02	ci right 1.303367e-02	k: 1487	n:120000
ARHGEF1   120000 perm   33 sec   (3682 perm/sec)   p_kst 1.239167e-02   p_cons 7.277083e-01   p_joint 2.762500e-02

Joint ci ratio: 6.368897e-02	ci left: 2.741282e-02	ci right 2.922368e-02	k: 3680	n:130000
Cons ci ratio: 6.655248e-03	ci left: 7.249936e-01	ci right 7.298424e-01	k: 94565	n:130000
KS ci ratio: 9.663319e-02	ci left: 1.189559e-02	ci right 1.311092e-02	k: 1624	n:130000
ARHGEF1   130000 perm   36 sec   (3623 perm/sec)   p_kst 1.249231e-02   p_cons 7.274231e-01   p_joint 2.830769e-02

Outputting figure to mutsig2_images.part000000000010/ARHGEF1.5_2896_130000_0.012492_0.72742_0.028308.png
                gene_name: ARHGEF1
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 55 percent done.
ARHGEF18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.634162e-01	ci left: 9.412543e-03	ci right 1.367914e-02	k: 114	n:10000
Cons ci ratio: 9.251487e-02	ci left: 1.451135e-01	ci right 1.592898e-01	k: 1521	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
ARHGEF18   10000 perm   2 sec   (5152 perm/sec)   p_kst 3.000000e-04   p_cons 1.521000e-01   p_joint 1.140000e-02

Joint ci ratio: 4.055288e-01	ci left: 3.709812e-03	ci right 5.638552e-03	k: 92	n:20000
Cons ci ratio: 6.678307e-02	ci left: 1.420204e-01	ci right 1.518825e-01	k: 2938	n:20000
KS ci ratio: 1.306340e+00	ci left: 1.727069e-04	ci right 7.880065e-04	k: 8	n:20000
ARHGEF18   20000 perm   4 sec   (4658 perm/sec)   p_kst 4.000000e-04   p_cons 1.469000e-01   p_joint 4.600000e-03

Joint ci ratio: 5.431258e-01	ci left: 1.266016e-03	ci right 2.234588e-03	k: 51	n:30000
Cons ci ratio: 5.464110e-02	ci left: 1.424175e-01	ci right 1.504511e-01	k: 4392	n:30000
KS ci ratio: 1.086959e+00	ci left: 2.067024e-04	ci right 6.986151e-04	k: 12	n:30000
ARHGEF18   30000 perm   7 sec   (4442 perm/sec)   p_kst 4.000000e-04   p_cons 1.464000e-01   p_joint 1.700000e-03

Joint ci ratio: 4.583767e-01	ci left: 1.408647e-03	ci right 2.266273e-03	k: 72	n:40000
Cons ci ratio: 4.709642e-02	ci left: 1.441371e-01	ci right 1.511141e-01	k: 5904	n:40000
KS ci ratio: 8.763085e-01	ci left: 2.860045e-04	ci right 7.416724e-04	k: 19	n:40000
ARHGEF18   40000 perm   9 sec   (4317 perm/sec)   p_kst 4.750000e-04   p_cons 1.476000e-01   p_joint 1.800000e-03

Joint ci ratio: 4.785785e-01	ci left: 1.021030e-03	ci right 1.679062e-03	k: 66	n:50000
Cons ci ratio: 4.214868e-02	ci left: 1.443627e-01	ci right 1.505983e-01	k: 7373	n:50000
KS ci ratio: 7.685677e-01	ci left: 3.235989e-04	ci right 7.380108e-04	k: 25	n:50000
ARHGEF18   50000 perm   12 sec   (4223 perm/sec)   p_kst 5.000000e-04   p_cons 1.474600e-01   p_joint 1.320000e-03

Joint ci ratio: 4.223979e-01	ci left: 1.131735e-03	ci right 1.751437e-03	k: 85	n:60000
Cons ci ratio: 3.848349e-02	ci left: 1.445887e-01	ci right 1.502788e-01	k: 8845	n:60000
KS ci ratio: 7.542283e-01	ci left: 2.830866e-04	ci right 6.348697e-04	k: 26	n:60000
ARHGEF18   60000 perm   14 sec   (4138 perm/sec)   p_kst 4.333333e-04   p_cons 1.474167e-01   p_joint 1.416667e-03

Joint ci ratio: 3.998060e-01	ci left: 1.098144e-03	ci right 1.658786e-03	k: 95	n:70000
Cons ci ratio: 3.559511e-02	ci left: 1.450366e-01	ci right 1.503069e-01	k: 10336	n:70000
KS ci ratio: 7.038918e-01	ci left: 2.891734e-04	ci right 6.117563e-04	k: 30	n:70000
ARHGEF18   70000 perm   17 sec   (4064 perm/sec)   p_kst 4.285714e-04   p_cons 1.476571e-01   p_joint 1.357143e-03

Joint ci ratio: 3.957347e-01	ci left: 9.833624e-04	ci right 1.478950e-03	k: 97	n:80000
Cons ci ratio: 3.324951e-02	ci left: 1.455583e-01	ci right 1.504923e-01	k: 11841	n:80000
KS ci ratio: 6.822394e-01	ci left: 2.736153e-04	ci right 5.646342e-04	k: 32	n:80000
ARHGEF18   80000 perm   20 sec   (3988 perm/sec)   p_kst 4.000000e-04   p_cons 1.480125e-01   p_joint 1.212500e-03

Joint ci ratio: 3.860259e-01	ci left: 9.241895e-04	ci right 1.375623e-03	k: 102	n:90000
Cons ci ratio: 3.135244e-02	ci left: 1.456638e-01	ci right 1.503145e-01	k: 13318	n:90000
KS ci ratio: 6.531990e-01	ci left: 2.708898e-04	ci right 5.408092e-04	k: 35	n:90000
ARHGEF18   90000 perm   23 sec   (3907 perm/sec)   p_kst 3.888889e-04   p_cons 1.479778e-01   p_joint 1.133333e-03

Joint ci ratio: 3.606505e-01	ci left: 9.677150e-04	ci right 1.402051e-03	k: 117	n:100000
Cons ci ratio: 2.973752e-02	ci left: 1.458342e-01	ci right 1.502463e-01	k: 14803	n:100000
KS ci ratio: 6.047391e-01	ci left: 2.942386e-04	ci right 5.561706e-04	k: 41	n:100000
ARHGEF18   100000 perm   26 sec   (3814 perm/sec)   p_kst 4.100000e-04   p_cons 1.480300e-01   p_joint 1.170000e-03

Joint ci ratio: 3.561660e-01	ci left: 9.045523e-04	ci right 1.304321e-03	k: 120	n:110000
Cons ci ratio: 2.830203e-02	ci left: 1.463943e-01	ci right 1.506061e-01	k: 16334	n:110000
KS ci ratio: 5.842369e-01	ci left: 2.906552e-04	ci right 5.369445e-04	k: 44	n:110000
ARHGEF18   110000 perm   29 sec   (3741 perm/sec)   p_kst 4.000000e-04   p_cons 1.484909e-01   p_joint 1.090909e-03

Joint ci ratio: 3.490365e-01	ci left: 8.671463e-04	ci right 1.240975e-03	k: 125	n:120000
Cons ci ratio: 2.706949e-02	ci left: 1.467410e-01	ci right 1.507760e-01	k: 17850	n:120000
KS ci ratio: 5.383322e-01	ci left: 3.236505e-04	ci right 5.682207e-04	k: 52	n:120000
ARHGEF18   120000 perm   33 sec   (3667 perm/sec)   p_kst 4.333333e-04   p_cons 1.487500e-01   p_joint 1.041667e-03

Joint ci ratio: 3.735977e-01	ci left: 6.885132e-04	ci right 1.011347e-03	k: 109	n:130000
Cons ci ratio: 2.601352e-02	ci left: 1.467623e-01	ci right 1.506380e-01	k: 19330	n:130000
KS ci ratio: 5.102227e-01	ci left: 3.388002e-04	ci right 5.767196e-04	k: 58	n:130000
ARHGEF18   130000 perm   36 sec   (3622 perm/sec)   p_kst 4.461538e-04   p_cons 1.486923e-01   p_joint 8.384615e-04

Joint ci ratio: 3.591918e-01	ci left: 6.977033e-04	ci right 1.009284e-03	k: 118	n:140000
Cons ci ratio: 2.507080e-02	ci left: 1.467974e-01	ci right 1.505315e-01	k: 20812	n:140000
KS ci ratio: 5.017934e-01	ci left: 3.270606e-04	ci right 5.516224e-04	k: 60	n:140000
ARHGEF18   140000 perm   39 sec   (3579 perm/sec)   p_kst 4.285714e-04   p_cons 1.486571e-01   p_joint 8.428571e-04

Joint ci ratio: 3.490735e-01	ci left: 6.937055e-04	ci right 9.927998e-04	k: 125	n:150000
Cons ci ratio: 2.423196e-02	ci left: 1.467437e-01	ci right 1.503499e-01	k: 22281	n:150000
KS ci ratio: 4.651067e-01	ci left: 3.638071e-04	ci right 5.895690e-04	k: 70	n:150000
ARHGEF18   150000 perm   42 sec   (3533 perm/sec)   p_kst 4.666667e-04   p_cons 1.485400e-01   p_joint 8.333333e-04

Joint ci ratio: 3.592110e-01	ci left: 6.104851e-04	ci right 8.831327e-04	k: 118	n:160000
Cons ci ratio: 2.343382e-02	ci left: 1.471092e-01	ci right 1.506036e-01	k: 23816	n:160000
KS ci ratio: 4.525351e-01	ci left: 3.631789e-04	ci right 5.805921e-04	k: 74	n:160000
ARHGEF18   160000 perm   46 sec   (3462 perm/sec)   p_kst 4.625000e-04   p_cons 1.488500e-01   p_joint 7.375000e-04

Joint ci ratio: 3.880202e-01	ci left: 4.839438e-04	ci right 7.218607e-04	k: 101	n:170000
Cons ci ratio: 2.270704e-02	ci left: 1.474626e-01	ci right 1.508553e-01	k: 25356	n:170000
KS ci ratio: 4.437495e-01	ci left: 3.574701e-04	ci right 5.660667e-04	k: 77	n:170000
ARHGEF18   170000 perm   50 sec   (3421 perm/sec)   p_kst 4.529412e-04   p_cons 1.491529e-01   p_joint 5.941176e-04

Joint ci ratio: 3.842755e-01	ci left: 4.670896e-04	ci right 6.939436e-04	k: 103	n:180000
Cons ci ratio: 2.204104e-02	ci left: 1.478113e-01	ci right 1.511111e-01	k: 26902	n:180000
KS ci ratio: 4.226023e-01	ci left: 3.772112e-04	ci right 5.838775e-04	k: 85	n:180000
ARHGEF18   180000 perm   53 sec   (3373 perm/sec)   p_kst 4.722222e-04   p_cons 1.494556e-01   p_joint 5.722222e-04

Joint ci ratio: 3.770940e-01	ci left: 4.615437e-04	ci right 6.804787e-04	k: 107	n:190000
Cons ci ratio: 2.145344e-02	ci left: 1.478522e-01	ci right 1.510638e-01	k: 28396	n:190000
KS ci ratio: 4.131053e-01	ci left: 3.761969e-04	ci right 5.764013e-04	k: 89	n:190000
ARHGEF18   190000 perm   57 sec   (3335 perm/sec)   p_kst 4.684211e-04   p_cons 1.494526e-01   p_joint 5.631579e-04

Joint ci ratio: 2.108631e-01	ci left: 1.543154e-03	ci right 1.911529e-03	k: 344	n:200000
Cons ci ratio: 2.092323e-02	ci left: 1.477357e-01	ci right 1.508645e-01	k: 29859	n:200000
KS ci ratio: 4.042211e-01	ci left: 3.753309e-04	ci right 5.696266e-04	k: 93	n:200000
ARHGEF18   200000 perm   61 sec   (3295 perm/sec)   p_kst 4.650000e-04   p_cons 1.492950e-01   p_joint 1.720000e-03

Joint ci ratio: 3.288471e-01	ci left: 5.652089e-04	ci right 7.917996e-04	k: 141	n:210000
Cons ci ratio: 2.041860e-02	ci left: 1.477782e-01	ci right 1.508315e-01	k: 31353	n:210000
KS ci ratio: 3.670411e-01	ci left: 4.434866e-04	ci right 6.469037e-04	k: 113	n:210000
ARHGEF18   210000 perm   65 sec   (3253 perm/sec)   p_kst 5.380952e-04   p_cons 1.493000e-01   p_joint 6.714286e-04

Joint ci ratio: 3.276996e-01	ci left: 5.436874e-04	ci right 7.607292e-04	k: 142	n:220000
Cons ci ratio: 1.995916e-02	ci left: 1.476864e-01	ci right 1.506683e-01	k: 32818	n:220000
KS ci ratio: 3.548009e-01	ci left: 4.563957e-04	ci right 6.571446e-04	k: 121	n:220000
ARHGEF18   220000 perm   68 sec   (3214 perm/sec)   p_kst 5.500000e-04   p_cons 1.491727e-01   p_joint 6.454545e-04

Joint ci ratio: 3.232121e-01	ci left: 5.360191e-04	ci right 7.464619e-04	k: 146	n:230000
Cons ci ratio: 1.953041e-02	ci left: 1.475903e-01	ci right 1.505055e-01	k: 34280	n:230000
KS ci ratio: 3.533592e-01	ci left: 4.405129e-04	ci right 6.333073e-04	k: 122	n:230000
ARHGEF18   230000 perm   72 sec   (3176 perm/sec)   p_kst 5.304348e-04   p_cons 1.490435e-01   p_joint 6.347826e-04

Joint ci ratio: 3.210385e-01	ci left: 5.213438e-04	ci right 7.243653e-04	k: 148	n:240000
Cons ci ratio: 1.911715e-02	ci left: 1.476481e-01	ci right 1.505021e-01	k: 35777	n:240000
KS ci ratio: 3.423978e-01	ci left: 4.525803e-04	ci right 6.431525e-04	k: 130	n:240000
ARHGEF18   240000 perm   76 sec   (3138 perm/sec)   p_kst 5.416667e-04   p_cons 1.490708e-01   p_joint 6.166667e-04

Joint ci ratio: 3.254432e-01	ci left: 4.857866e-04	ci right 6.780994e-04	k: 144	n:250000
Cons ci ratio: 1.872670e-02	ci left: 1.477337e-01	ci right 1.505304e-01	k: 37282	n:250000
KS ci ratio: 3.398160e-01	ci left: 4.417914e-04	ci right 6.261099e-04	k: 132	n:250000
ARHGEF18   250000 perm   81 sec   (3102 perm/sec)   p_kst 5.280000e-04   p_cons 1.491280e-01   p_joint 5.760000e-04

Joint ci ratio: 3.312106e-01	ci left: 4.494552e-04	ci right 6.312109e-04	k: 139	n:260000
Cons ci ratio: 1.837455e-02	ci left: 1.476026e-01	ci right 1.503437e-01	k: 38732	n:260000
KS ci ratio: 3.348193e-01	ci left: 4.388810e-04	ci right 6.187118e-04	k: 136	n:260000
ARHGEF18   260000 perm   85 sec   (3065 perm/sec)   p_kst 5.230769e-04   p_cons 1.489692e-01   p_joint 5.346154e-04

Joint ci ratio: 3.312140e-01	ci left: 4.328080e-04	ci right 6.078338e-04	k: 139	n:270000
Cons ci ratio: 1.802178e-02	ci left: 1.477584e-01	ci right 1.504491e-01	k: 40257	n:270000
KS ci ratio: 3.221331e-01	ci left: 4.600095e-04	ci right 6.398827e-04	k: 147	n:270000
ARHGEF18   270000 perm   89 sec   (3030 perm/sec)   p_kst 5.444444e-04   p_cons 1.491000e-01   p_joint 5.148148e-04

Joint ci ratio: 3.243363e-01	ci left: 4.370164e-04	ci right 6.093107e-04	k: 145	n:280000
Cons ci ratio: 1.769282e-02	ci left: 1.478430e-01	ci right 1.504857e-01	k: 41765	n:280000
KS ci ratio: 3.147743e-01	ci left: 4.665830e-04	ci right 6.440207e-04	k: 154	n:280000
ARHGEF18   280000 perm   93 sec   (2995 perm/sec)   p_kst 5.500000e-04   p_cons 1.491607e-01   p_joint 5.178571e-04

Joint ci ratio: 3.199833e-01	ci left: 4.346246e-04	ci right 6.032049e-04	k: 149	n:290000
Cons ci ratio: 1.737934e-02	ci left: 1.479497e-01	ci right 1.505469e-01	k: 43281	n:290000
KS ci ratio: 3.107905e-01	ci left: 4.632044e-04	ci right 6.366856e-04	k: 158	n:290000
ARHGEF18   290000 perm   98 sec   (2962 perm/sec)   p_kst 5.448276e-04   p_cons 1.492448e-01   p_joint 5.137931e-04

Joint ci ratio: 3.411166e-01	ci left: 3.651085e-04	ci right 5.181454e-04	k: 131	n:300000
Cons ci ratio: 1.707390e-02	ci left: 1.481693e-01	ci right 1.507242e-01	k: 44833	n:300000
KS ci ratio: 3.060164e-01	ci left: 4.631413e-04	ci right 6.334152e-04	k: 163	n:300000
ARHGEF18   300000 perm   102 sec   (2929 perm/sec)   p_kst 5.433333e-04   p_cons 1.494433e-01   p_joint 4.366667e-04

Joint ci ratio: 1.953847e-01	ci left: 1.170094e-03	ci right 1.426471e-03	k: 401	n:310000
Cons ci ratio: 1.680382e-02	ci left: 1.480761e-01	ci right 1.505886e-01	k: 46292	n:310000
KS ci ratio: 2.970905e-01	ci left: 4.780200e-04	ci right 6.476724e-04	k: 173	n:310000
ARHGEF18   310000 perm   107 sec   (2897 perm/sec)   p_kst 5.580645e-04   p_cons 1.493290e-01   p_joint 1.293548e-03

Joint ci ratio: 1.923001e-01	ci left: 1.172182e-03	ci right 1.424488e-03	k: 414	n:320000
Cons ci ratio: 1.653355e-02	ci left: 1.481821e-01	ci right 1.506555e-01	k: 47813	n:320000
KS ci ratio: 2.945633e-01	ci left: 4.717610e-04	ci right 6.375017e-04	k: 176	n:320000
ARHGEF18   320000 perm   112 sec   (2866 perm/sec)   p_kst 5.500000e-04   p_cons 1.494156e-01   p_joint 1.293750e-03

Joint ci ratio: 1.893572e-01	ci left: 1.174174e-03	ci right 1.422595e-03	k: 427	n:330000
Cons ci ratio: 1.628561e-02	ci left: 1.481309e-01	ci right 1.505661e-01	k: 49284	n:330000
KS ci ratio: 2.881229e-01	ci left: 4.799367e-04	ci right 6.441919e-04	k: 184	n:330000
ARHGEF18   330000 perm   117 sec   (2829 perm/sec)   p_kst 5.575758e-04   p_cons 1.493455e-01   p_joint 1.293939e-03

Joint ci ratio: 2.285198e-01	ci left: 7.659408e-04	ci right 9.662532e-04	k: 293	n:340000
Cons ci ratio: 1.605539e-02	ci left: 1.479746e-01	ci right 1.503725e-01	k: 50718	n:340000
KS ci ratio: 2.954042e-01	ci left: 4.412857e-04	ci right 5.968451e-04	k: 175	n:340000
ARHGEF18   340000 perm   121 sec   (2801 perm/sec)   p_kst 5.147059e-04   p_cons 1.491706e-01   p_joint 8.617647e-04

Joint ci ratio: 2.308928e-01	ci left: 7.278987e-04	ci right 9.205208e-04	k: 287	n:350000
Cons ci ratio: 1.582628e-02	ci left: 1.479613e-01	ci right 1.503245e-01	k: 52199	n:350000
KS ci ratio: 2.937413e-01	ci left: 4.339694e-04	ci right 5.859281e-04	k: 177	n:350000
ARHGEF18   350000 perm   126 sec   (2772 perm/sec)   p_kst 5.057143e-04   p_cons 1.491400e-01   p_joint 8.200000e-04

Joint ci ratio: 2.289153e-01	ci left: 7.207680e-04	ci right 9.096387e-04	k: 292	n:360000
Cons ci ratio: 1.561302e-02	ci left: 1.478465e-01	ci right 1.501758e-01	k: 53643	n:360000
KS ci ratio: 2.889120e-01	ci left: 4.373637e-04	ci right 5.875333e-04	k: 183	n:360000
ARHGEF18   360000 perm   131 sec   (2744 perm/sec)   p_kst 5.083333e-04   p_cons 1.490083e-01   p_joint 8.111111e-04

Joint ci ratio: 2.269877e-01	ci left: 7.140293e-04	ci right 8.993381e-04	k: 297	n:370000
Cons ci ratio: 1.540866e-02	ci left: 1.477301e-01	ci right 1.500268e-01	k: 55084	n:370000
KS ci ratio: 2.820938e-01	ci left: 4.481264e-04	ci right 5.977146e-04	k: 192	n:370000
ARHGEF18   370000 perm   136 sec   (2712 perm/sec)   p_kst 5.189189e-04   p_cons 1.488757e-01   p_joint 8.027027e-04

Joint ci ratio: 2.289202e-01	ci left: 6.828312e-04	ci right 8.617652e-04	k: 292	n:380000
Cons ci ratio: 1.520358e-02	ci left: 1.477616e-01	ci right 1.500279e-01	k: 56579	n:380000
KS ci ratio: 2.764220e-01	ci left: 4.559125e-04	ci right 6.045079e-04	k: 200	n:380000
ARHGEF18   380000 perm   142 sec   (2684 perm/sec)   p_kst 5.263158e-04   p_cons 1.488921e-01   p_joint 7.684211e-04

Joint ci ratio: 2.262340e-01	ci left: 6.822482e-04	ci right 8.586389e-04	k: 299	n:390000
Cons ci ratio: 1.500542e-02	ci left: 1.478096e-01	ci right 1.500469e-01	k: 58081	n:390000
KS ci ratio: 2.717303e-01	ci left: 4.609381e-04	ci right 6.081865e-04	k: 207	n:390000
ARHGEF18   390000 perm   147 sec   (2649 perm/sec)   p_kst 5.307692e-04   p_cons 1.489256e-01   p_joint 7.666667e-04

Joint ci ratio: 2.251125e-01	ci left: 6.722677e-04	ci right 8.450968e-04	k: 302	n:400000
Cons ci ratio: 1.481334e-02	ci left: 1.478803e-01	ci right 1.500897e-01	k: 59593	n:400000
KS ci ratio: 2.691550e-01	ci left: 4.587365e-04	ci right 6.036583e-04	k: 211	n:400000
ARHGEF18   400000 perm   152 sec   (2624 perm/sec)   p_kst 5.275000e-04   p_cons 1.489825e-01   p_joint 7.550000e-04

Joint ci ratio: 2.229167e-01	ci left: 6.696838e-04	ci right 8.399388e-04	k: 308	n:410000
Cons ci ratio: 1.463775e-02	ci left: 1.477873e-01	ci right 1.499689e-01	k: 61039	n:410000
KS ci ratio: 2.654250e-01	ci left: 4.612016e-04	ci right 6.045473e-04	k: 217	n:410000
ARHGEF18   410000 perm   158 sec   (2595 perm/sec)   p_kst 5.292683e-04   p_cons 1.488756e-01   p_joint 7.512195e-04

Joint ci ratio: 2.204340e-01	ci left: 6.694802e-04	ci right 8.375308e-04	k: 315	n:420000
Cons ci ratio: 1.446092e-02	ci left: 1.478270e-01	ci right 1.499826e-01	k: 62539	n:420000
KS ci ratio: 2.618459e-01	ci left: 4.635623e-04	ci right 6.053809e-04	k: 223	n:420000
ARHGEF18   420000 perm   164 sec   (2566 perm/sec)   p_kst 5.309524e-04   p_cons 1.489024e-01   p_joint 7.500000e-04

Joint ci ratio: 2.176955e-01	ci left: 6.714949e-04	ci right 8.376771e-04	k: 323	n:430000
Cons ci ratio: 1.429388e-02	ci left: 1.478024e-01	ci right 1.499326e-01	k: 64012	n:430000
KS ci ratio: 2.584077e-01	ci left: 4.658256e-04	ci right 6.061634e-04	k: 229	n:430000
ARHGEF18   430000 perm   169 sec   (2541 perm/sec)   p_kst 5.325581e-04   p_cons 1.488651e-01   p_joint 7.511628e-04

Joint ci ratio: 2.150565e-01	ci left: 6.734303e-04	ci right 8.378045e-04	k: 331	n:440000
Cons ci ratio: 1.412149e-02	ci left: 1.479762e-01	ci right 1.500830e-01	k: 65572	n:440000
KS ci ratio: 2.545625e-01	ci left: 4.701253e-04	ci right 6.093163e-04	k: 236	n:440000
ARHGEF18   440000 perm   175 sec   (2519 perm/sec)   p_kst 5.363636e-04   p_cons 1.490273e-01   p_joint 7.522727e-04

Joint ci ratio: 2.115792e-01	ci left: 6.816041e-04	ci right 8.449346e-04	k: 342	n:450000
Cons ci ratio: 1.395665e-02	ci left: 1.481159e-01	ci right 1.501998e-01	k: 67120	n:450000
KS ci ratio: 2.503712e-01	ci left: 4.763313e-04	ci right 6.146759e-04	k: 244	n:450000
ARHGEF18   450000 perm   180 sec   (2494 perm/sec)   p_kst 5.422222e-04   p_cons 1.491556e-01   p_joint 7.600000e-04

Joint ci ratio: 2.091541e-01	ci left: 6.832618e-04	ci right 8.448725e-04	k: 350	n:460000
Cons ci ratio: 1.380891e-02	ci left: 1.480393e-01	ci right 1.500999e-01	k: 68571	n:460000
KS ci ratio: 2.483524e-01	ci left: 4.741285e-04	ci right 6.105514e-04	k: 248	n:460000
ARHGEF18   460000 perm   186 sec   (2471 perm/sec)   p_kst 5.391304e-04   p_cons 1.490674e-01   p_joint 7.608696e-04

Joint ci ratio: 2.147383e-01	ci left: 6.324570e-04	ci right 7.865717e-04	k: 332	n:470000
Cons ci ratio: 1.367162e-02	ci left: 1.478579e-01	ci right 1.498954e-01	k: 69971	n:470000
KS ci ratio: 2.449330e-01	ci left: 4.780139e-04	ci right 6.133731e-04	k: 255	n:470000
ARHGEF18   470000 perm   192 sec   (2449 perm/sec)   p_kst 5.425532e-04   p_cons 1.488745e-01   p_joint 7.063830e-04

Joint ci ratio: 2.140975e-01	ci left: 6.232235e-04	ci right 7.745753e-04	k: 334	n:480000
Cons ci ratio: 1.353021e-02	ci left: 1.478358e-01	ci right 1.498517e-01	k: 71444	n:480000
KS ci ratio: 2.439827e-01	ci left: 4.719666e-04	ci right 6.050162e-04	k: 257	n:480000
ARHGEF18   480000 perm   198 sec   (2427 perm/sec)   p_kst 5.354167e-04   p_cons 1.488417e-01   p_joint 6.958333e-04

Joint ci ratio: 2.125179e-01	ci left: 6.201635e-04	ci right 7.695162e-04	k: 339	n:490000
Cons ci ratio: 1.339450e-02	ci left: 1.477883e-01	ci right 1.497832e-01	k: 72904	n:490000
KS ci ratio: 2.407383e-01	ci left: 4.757529e-04	ci right 6.078203e-04	k: 264	n:490000
ARHGEF18   490000 perm   204 sec   (2405 perm/sec)   p_kst 5.387755e-04   p_cons 1.487837e-01   p_joint 6.918367e-04

Joint ci ratio: 1.564514e-01	ci left: 1.155886e-03	ci right 1.353966e-03	k: 626	n:500000
Cons ci ratio: 1.263920e-02	ci left: 1.603214e-01	ci right 1.623626e-01	k: 80670	n:500000
KS ci ratio: 2.358909e-01	ci left: 4.869248e-04	ci right 6.189745e-04	k: 275	n:500000
ARHGEF18   500000 perm   210 sec   (2384 perm/sec)   p_kst 5.500000e-04   p_cons 1.613400e-01   p_joint 1.252000e-03

Joint ci ratio: 1.554634e-01	ci left: 1.148295e-03	ci right 1.343716e-03	k: 634	n:510000
Cons ci ratio: 1.251562e-02	ci left: 1.603111e-01	ci right 1.623320e-01	k: 82273	n:510000
KS ci ratio: 2.337829e-01	ci left: 4.866043e-04	ci right 6.172175e-04	k: 280	n:510000
ARHGEF18   510000 perm   216 sec   (2362 perm/sec)   p_kst 5.490196e-04   p_cons 1.613196e-01   p_joint 1.243137e-03

Joint ci ratio: 1.390970e-01	ci left: 1.418909e-03	ci right 1.632860e-03	k: 792	n:520000
Cons ci ratio: 1.239374e-02	ci left: 1.603415e-01	ci right 1.623430e-01	k: 83897	n:520000
KS ci ratio: 2.255049e-01	ci left: 5.153096e-04	ci right 6.480498e-04	k: 301	n:520000
ARHGEF18   520000 perm   222 sec   (2341 perm/sec)   p_kst 5.788462e-04   p_cons 1.613404e-01   p_joint 1.523077e-03

Joint ci ratio: 1.378853e-01	ci left: 1.417637e-03	ci right 1.629382e-03	k: 806	n:530000
Cons ci ratio: 1.227228e-02	ci left: 1.604387e-01	ci right 1.624216e-01	k: 85557	n:530000
KS ci ratio: 2.232976e-01	ci left: 5.162712e-04	ci right 6.477785e-04	k: 307	n:530000
ARHGEF18   530000 perm   229 sec   (2315 perm/sec)   p_kst 5.792453e-04   p_cons 1.614283e-01   p_joint 1.520755e-03

Joint ci ratio: 1.367882e-01	ci left: 1.414631e-03	ci right 1.624109e-03	k: 819	n:540000
Cons ci ratio: 1.215872e-02	ci left: 1.604344e-01	ci right 1.623988e-01	k: 87164	n:540000
KS ci ratio: 2.201043e-01	ci left: 5.224521e-04	ci right 6.533730e-04	k: 316	n:540000
ARHGEF18   540000 perm   236 sec   (2291 perm/sec)   p_kst 5.851852e-04   p_cons 1.614148e-01   p_joint 1.516667e-03

Joint ci ratio: 1.382327e-01	ci left: 1.359062e-03	ci right 1.562611e-03	k: 802	n:550000
Cons ci ratio: 1.204672e-02	ci left: 1.604649e-01	ci right 1.624114e-01	k: 88790	n:550000
KS ci ratio: 2.194140e-01	ci left: 5.163890e-04	ci right 6.453299e-04	k: 318	n:550000
ARHGEF18   550000 perm   242 sec   (2273 perm/sec)   p_kst 5.781818e-04   p_cons 1.614364e-01   p_joint 1.458182e-03

Joint ci ratio: 1.377202e-01	ci left: 1.345137e-03	ci right 1.545792e-03	k: 808	n:560000
Cons ci ratio: 1.193509e-02	ci left: 1.605549e-01	ci right 1.624844e-01	k: 90450	n:560000
KS ci ratio: 2.187302e-01	ci left: 5.105430e-04	ci right 6.375735e-04	k: 320	n:560000
ARHGEF18   560000 perm   248 sec   (2256 perm/sec)   p_kst 5.714286e-04   p_cons 1.615179e-01   p_joint 1.442857e-03

Joint ci ratio: 1.361303e-01	ci left: 1.353730e-03	ci right 1.553147e-03	k: 827	n:570000
Cons ci ratio: 1.182504e-02	ci left: 1.606750e-01	ci right 1.625880e-01	k: 92129	n:570000
KS ci ratio: 2.183912e-01	ci left: 5.032443e-04	ci right 6.282386e-04	k: 321	n:570000
ARHGEF18   570000 perm   255 sec   (2234 perm/sec)   p_kst 5.631579e-04   p_cons 1.616298e-01   p_joint 1.450877e-03

Joint ci ratio: 1.354782e-01	ci left: 1.343714e-03	ci right 1.540631e-03	k: 835	n:580000
Cons ci ratio: 1.172082e-02	ci left: 1.607258e-01	ci right 1.626224e-01	k: 93770	n:580000
KS ci ratio: 2.173814e-01	ci left: 4.994577e-04	ci right 6.228613e-04	k: 324	n:580000
ARHGEF18   580000 perm   262 sec   (2214 perm/sec)   p_kst 5.586207e-04   p_cons 1.616724e-01   p_joint 1.439655e-03

Joint ci ratio: 1.357239e-01	ci left: 1.316025e-03	ci right 1.509263e-03	k: 832	n:590000
Cons ci ratio: 1.162250e-02	ci left: 1.607005e-01	ci right 1.625808e-01	k: 95367	n:590000
KS ci ratio: 2.163854e-01	ci left: 4.958008e-04	ci right 6.176650e-04	k: 327	n:590000
ARHGEF18   590000 perm   269 sec   (2196 perm/sec)   p_kst 5.542373e-04   p_cons 1.616390e-01   p_joint 1.410169e-03

Joint ci ratio: 1.351580e-01	ci left: 1.305362e-03	ci right 1.496171e-03	k: 839	n:600000
Cons ci ratio: 1.152491e-02	ci left: 1.607160e-01	ci right 1.625806e-01	k: 96988	n:600000
KS ci ratio: 2.150782e-01	ci left: 4.938438e-04	ci right 6.143970e-04	k: 331	n:600000
ARHGEF18   600000 perm   276 sec   (2178 perm/sec)   p_kst 5.516667e-04   p_cons 1.616467e-01   p_joint 1.398333e-03

Joint ci ratio: 1.342820e-01	ci left: 1.301388e-03	ci right 1.490284e-03	k: 850	n:610000
Cons ci ratio: 1.142899e-02	ci left: 1.607491e-01	ci right 1.625984e-01	k: 98620	n:610000
KS ci ratio: 2.141135e-01	ci left: 4.904017e-04	ci right 6.095070e-04	k: 334	n:610000
ARHGEF18   610000 perm   283 sec   (2159 perm/sec)   p_kst 5.475410e-04   p_cons 1.616721e-01   p_joint 1.393443e-03

Joint ci ratio: 1.350806e-01	ci left: 1.264811e-03	ci right 1.449577e-03	k: 840	n:620000
Cons ci ratio: 1.134014e-02	ci left: 1.606685e-01	ci right 1.625024e-01	k: 100182	n:620000
KS ci ratio: 2.125334e-01	ci left: 4.901256e-04	ci right 6.081710e-04	k: 339	n:620000
ARHGEF18   620000 perm   290 sec   (2138 perm/sec)   p_kst 5.467742e-04   p_cons 1.615839e-01   p_joint 1.354839e-03

Joint ci ratio: 2.082869e-01	ci left: 5.033976e-04	ci right 6.219083e-04	k: 353	n:630000
Cons ci ratio: 1.209377e-02	ci left: 1.420652e-01	ci right 1.437953e-01	k: 90045	n:630000
KS ci ratio: 2.119116e-01	ci left: 4.853516e-04	ci right 6.018607e-04	k: 341	n:630000
ARHGEF18   630000 perm   297 sec   (2121 perm/sec)   p_kst 5.412698e-04   p_cons 1.429286e-01   p_joint 5.603175e-04

Joint ci ratio: 2.088791e-01	ci left: 4.925700e-04	ci right 6.089034e-04	k: 351	n:640000
Cons ci ratio: 1.199596e-02	ci left: 1.421323e-01	ci right 1.438491e-01	k: 91513	n:640000
KS ci ratio: 2.109886e-01	ci left: 4.822072e-04	ci right 5.973921e-04	k: 344	n:640000
ARHGEF18   640000 perm   304 sec   (2106 perm/sec)   p_kst 5.375000e-04   p_cons 1.429891e-01   p_joint 5.484375e-04

Joint ci ratio: 2.065448e-01	ci left: 4.966596e-04	ci right 6.124825e-04	k: 359	n:650000
Cons ci ratio: 1.189936e-02	ci left: 1.422204e-01	ci right 1.439243e-01	k: 92996	n:650000
KS ci ratio: 2.094762e-01	ci left: 4.820759e-04	ci right 5.962982e-04	k: 349	n:650000
ARHGEF18   650000 perm   311 sec   (2090 perm/sec)   p_kst 5.369231e-04   p_cons 1.430708e-01   p_joint 5.523077e-04

Joint ci ratio: 1.219879e-01	ci left: 1.466810e-03	ci right 1.658819e-03	k: 1030	n:660000
Cons ci ratio: 1.112981e-02	ci left: 1.573355e-01	ci right 1.590979e-01	k: 104422	n:660000
KS ci ratio: 2.077034e-01	ci left: 4.833879e-04	ci right 5.968284e-04	k: 355	n:660000
ARHGEF18   660000 perm   318 sec   (2075 perm/sec)   p_kst 5.378788e-04   p_cons 1.582152e-01   p_joint 1.560606e-03

Joint ci ratio: 1.215181e-01	ci left: 1.456494e-03	ci right 1.646365e-03	k: 1038	n:670000
Cons ci ratio: 1.104639e-02	ci left: 1.573433e-01	ci right 1.590925e-01	k: 106005	n:670000
KS ci ratio: 2.071229e-01	ci left: 4.790030e-04	ci right 5.910606e-04	k: 357	n:670000
ARHGEF18   670000 perm   325 sec   (2061 perm/sec)   p_kst 5.328358e-04   p_cons 1.582164e-01   p_joint 1.549254e-03

Joint ci ratio: 1.205931e-01	ci left: 1.457892e-03	ci right 1.646395e-03	k: 1054	n:680000
Cons ci ratio: 1.096670e-02	ci left: 1.573055e-01	ci right 1.590416e-01	k: 107557	n:680000
KS ci ratio: 2.059756e-01	ci left: 4.775369e-04	ci right 5.885548e-04	k: 361	n:680000
ARHGEF18   680000 perm   332 sec   (2046 perm/sec)   p_kst 5.308824e-04   p_cons 1.581721e-01   p_joint 1.550000e-03

Joint ci ratio: 1.197449e-01	ci left: 1.457849e-03	ci right 1.644927e-03	k: 1069	n:690000
Cons ci ratio: 1.089042e-02	ci left: 1.572269e-01	ci right 1.589499e-01	k: 109080	n:690000
KS ci ratio: 2.040123e-01	ci left: 4.802404e-04	ci right 5.906899e-04	k: 368	n:690000
ARHGEF18   690000 perm   340 sec   (2028 perm/sec)   p_kst 5.333333e-04   p_cons 1.580870e-01   p_joint 1.549275e-03

Joint ci ratio: 1.204814e-01	ci left: 1.419007e-03	ci right 1.602301e-03	k: 1056	n:700000
Cons ci ratio: 1.080857e-02	ci left: 1.573259e-01	ci right 1.590370e-01	k: 110726	n:700000
KS ci ratio: 2.037371e-01	ci left: 4.747353e-04	ci right 5.837530e-04	k: 369	n:700000
ARHGEF18   700000 perm   348 sec   (2013 perm/sec)   p_kst 5.271429e-04   p_cons 1.581800e-01   p_joint 1.508571e-03

Joint ci ratio: 1.071053e-01	ci left: 1.782218e-03	ci right 1.985261e-03	k: 1336	n:710000
Cons ci ratio: 1.072860e-02	ci left: 1.574207e-01	ci right 1.591201e-01	k: 112371	n:710000
KS ci ratio: 2.013030e-01	ci left: 4.800823e-04	ci right 5.888490e-04	k: 378	n:710000
ARHGEF18   710000 perm   355 sec   (1998 perm/sec)   p_kst 5.323944e-04   p_cons 1.582690e-01   p_joint 1.881690e-03

Joint ci ratio: 1.071870e-01	ci left: 1.754760e-03	ci right 1.954837e-03	k: 1334	n:720000
Cons ci ratio: 1.065327e-02	ci left: 1.574409e-01	ci right 1.591285e-01	k: 113964	n:720000
KS ci ratio: 2.007744e-01	ci left: 4.760523e-04	ci right 5.835881e-04	k: 380	n:720000
ARHGEF18   720000 perm   363 sec   (1984 perm/sec)   p_kst 5.277778e-04   p_cons 1.582833e-01   p_joint 1.852778e-03

Joint ci ratio: 1.065506e-01	ci left: 1.752054e-03	ci right 1.950562e-03	k: 1350	n:730000
Cons ci ratio: 1.057808e-02	ci left: 1.574961e-01	ci right 1.591723e-01	k: 115583	n:730000
KS ci ratio: 1.997289e-01	ci left: 4.747358e-04	ci right 5.813476e-04	k: 384	n:730000
ARHGEF18   730000 perm   371 sec   (1970 perm/sec)   p_kst 5.260274e-04   p_cons 1.583329e-01   p_joint 1.849315e-03

Joint ci ratio: 1.055393e-01	ci left: 1.762581e-03	ci right 1.960270e-03	k: 1376	n:740000
Cons ci ratio: 1.050505e-02	ci left: 1.575351e-01	ci right 1.592000e-01	k: 117191	n:740000
KS ci ratio: 1.981904e-01	ci left: 4.760247e-04	ci right 5.820030e-04	k: 390	n:740000
ARHGEF18   740000 perm   378 sec   (1956 perm/sec)   p_kst 5.270270e-04   p_cons 1.583662e-01   p_joint 1.859459e-03

Joint ci ratio: 1.243777e-01	ci left: 1.240386e-03	ci right 1.406171e-03	k: 991	n:750000
Cons ci ratio: 1.080387e-02	ci left: 1.485128e-01	ci right 1.501273e-01	k: 111989	n:750000
KS ci ratio: 1.966870e-01	ci left: 4.772822e-04	ci right 5.826379e-04	k: 396	n:750000
ARHGEF18   750000 perm   386 sec   (1941 perm/sec)   p_kst 5.280000e-04   p_cons 1.493187e-01   p_joint 1.321333e-03

Joint ci ratio: 1.243161e-01	ci left: 1.225340e-03	ci right 1.389026e-03	k: 992	n:760000
Cons ci ratio: 1.073179e-02	ci left: 1.485362e-01	ci right 1.501402e-01	k: 113496	n:760000
KS ci ratio: 1.949753e-01	ci left: 4.797612e-04	ci right 5.846331e-04	k: 403	n:760000
ARHGEF18   760000 perm   395 sec   (1925 perm/sec)   p_kst 5.302632e-04   p_cons 1.493368e-01   p_joint 1.305263e-03

Joint ci ratio: 1.249487e-01	ci left: 1.196843e-03	ci right 1.357596e-03	k: 982	n:770000
Cons ci ratio: 1.066331e-02	ci left: 1.485072e-01	ci right 1.501006e-01	k: 114963	n:770000
KS ci ratio: 1.930727e-01	ci left: 4.834156e-04	ci right 5.879340e-04	k: 411	n:770000
ARHGEF18   770000 perm   403 sec   (1909 perm/sec)   p_kst 5.337662e-04   p_cons 1.493026e-01   p_joint 1.275325e-03

Joint ci ratio: 1.240682e-01	ci left: 1.198889e-03	ci right 1.358698e-03	k: 996	n:780000
Cons ci ratio: 1.059233e-02	ci left: 1.485699e-01	ci right 1.501532e-01	k: 116501	n:780000
KS ci ratio: 1.919118e-01	ci left: 4.833193e-04	ci right 5.871152e-04	k: 416	n:780000
ARHGEF18   780000 perm   411 sec   (1896 perm/sec)   p_kst 5.333333e-04   p_cons 1.493603e-01   p_joint 1.276923e-03

Joint ci ratio: 1.245076e-01	ci left: 1.175127e-03	ci right 1.332365e-03	k: 989	n:790000
Cons ci ratio: 1.052092e-02	ci left: 1.486752e-01	ci right 1.502489e-01	k: 118074	n:790000
KS ci ratio: 1.909981e-01	ci left: 4.820219e-04	ci right 5.849891e-04	k: 420	n:790000
ARHGEF18   790000 perm   420 sec   (1883 perm/sec)   p_kst 5.316456e-04   p_cons 1.494608e-01   p_joint 1.251899e-03

Joint ci ratio: 1.235748e-01	ci left: 1.178606e-03	ci right 1.335041e-03	k: 1004	n:800000
Cons ci ratio: 1.045407e-02	ci left: 1.487018e-01	ci right 1.502657e-01	k: 119586	n:800000
KS ci ratio: 1.900973e-01	ci left: 4.807581e-04	ci right 5.829150e-04	k: 424	n:800000
ARHGEF18   800000 perm   428 sec   (1870 perm/sec)   p_kst 5.300000e-04   p_cons 1.494825e-01   p_joint 1.255000e-03

Joint ci ratio: 1.228436e-01	ci left: 1.178413e-03	ci right 1.333831e-03	k: 1016	n:810000
Cons ci ratio: 1.038706e-02	ci left: 1.487623e-01	ci right 1.503168e-01	k: 121126	n:810000
KS ci ratio: 1.896520e-01	ci left: 4.771745e-04	ci right 5.783050e-04	k: 426	n:810000
ARHGEF18   810000 perm   437 sec   (1854 perm/sec)   p_kst 5.259259e-04   p_cons 1.495383e-01   p_joint 1.254321e-03

Joint ci ratio: 1.226034e-01	ci left: 1.168770e-03	ci right 1.322593e-03	k: 1020	n:820000
Cons ci ratio: 1.032572e-02	ci left: 1.487130e-01	ci right 1.502577e-01	k: 122577	n:820000
KS ci ratio: 1.894308e-01	ci left: 4.725168e-04	ci right 5.725300e-04	k: 427	n:820000
ARHGEF18   820000 perm   446 sec   (1840 perm/sec)   p_kst 5.207317e-04   p_cons 1.494841e-01   p_joint 1.243902e-03

Joint ci ratio: 1.220075e-01	ci left: 1.166368e-03	ci right 1.319074e-03	k: 1030	n:830000
Cons ci ratio: 1.026425e-02	ci left: 1.486950e-01	ci right 1.502303e-01	k: 124053	n:830000
KS ci ratio: 1.885519e-01	ci left: 4.714151e-04	ci right 5.706791e-04	k: 431	n:830000
ARHGEF18   830000 perm   454 sec   (1827 perm/sec)   p_kst 5.192771e-04   p_cons 1.494614e-01   p_joint 1.240964e-03

Joint ci ratio: 1.214787e-01	ci left: 1.162871e-03	ci right 1.314412e-03	k: 1039	n:840000
Cons ci ratio: 1.020405e-02	ci left: 1.486727e-01	ci right 1.501987e-01	k: 125525	n:840000
KS ci ratio: 1.872559e-01	ci left: 4.726099e-04	ci right 5.713637e-04	k: 437	n:840000
ARHGEF18   840000 perm   463 sec   (1816 perm/sec)   p_kst 5.202381e-04   p_cons 1.494345e-01   p_joint 1.236905e-03

Joint ci ratio: 1.206118e-01	ci left: 1.166303e-03	ci right 1.317129e-03	k: 1054	n:850000
Cons ci ratio: 1.014330e-02	ci left: 1.486909e-01	ci right 1.502080e-01	k: 127031	n:850000
KS ci ratio: 1.857771e-01	ci left: 4.749006e-04	ci right 5.732611e-04	k: 444	n:850000
ARHGEF18   850000 perm   471 sec   (1804 perm/sec)   p_kst 5.223529e-04   p_cons 1.494482e-01   p_joint 1.240000e-03

Joint ci ratio: 1.212472e-01	ci left: 1.140336e-03	ci right 1.288637e-03	k: 1043	n:860000
Cons ci ratio: 1.008676e-02	ci left: 1.486298e-01	ci right 1.501377e-01	k: 128469	n:860000
KS ci ratio: 1.853613e-01	ci left: 4.715960e-04	ci right 5.690289e-04	k: 446	n:860000
ARHGEF18   860000 perm   480 sec   (1792 perm/sec)   p_kst 5.186047e-04   p_cons 1.493826e-01   p_joint 1.212791e-03

Joint ci ratio: 1.208431e-01	ci left: 1.135031e-03	ci right 1.282115e-03	k: 1050	n:870000
Cons ci ratio: 1.002984e-02	ci left: 1.486033e-01	ci right 1.501024e-01	k: 129936	n:870000
KS ci ratio: 1.847427e-01	ci left: 4.694638e-04	ci right 5.660962e-04	k: 449	n:870000
ARHGEF18   870000 perm   489 sec   (1780 perm/sec)   p_kst 5.160920e-04   p_cons 1.493517e-01   p_joint 1.206897e-03

Joint ci ratio: 1.202725e-01	ci left: 1.133154e-03	ci right 1.279252e-03	k: 1060	n:880000
Cons ci ratio: 9.972227e-03	ci left: 1.486195e-01	ci right 1.501101e-01	k: 131440	n:880000
KS ci ratio: 1.841302e-01	ci left: 4.673806e-04	ci right 5.632297e-04	k: 452	n:880000
ARHGEF18   880000 perm   498 sec   (1769 perm/sec)   p_kst 5.136364e-04   p_cons 1.493636e-01   p_joint 1.204545e-03

Joint ci ratio: 1.212497e-01	ci left: 1.101897e-03	ci right 1.245202e-03	k: 1043	n:890000
Cons ci ratio: 9.916293e-03	ci left: 1.486174e-01	ci right 1.500995e-01	k: 132928	n:890000
KS ci ratio: 1.817380e-01	ci left: 4.749951e-04	ci right 5.710009e-04	k: 464	n:890000
ARHGEF18   890000 perm   506 sec   (1757 perm/sec)   p_kst 5.213483e-04   p_cons 1.493573e-01   p_joint 1.171910e-03

Joint ci ratio: 1.204447e-01	ci left: 1.104739e-03	ci right 1.247392e-03	k: 1057	n:900000
Cons ci ratio: 9.858832e-03	ci left: 1.486785e-01	ci right 1.501526e-01	k: 134473	n:900000
KS ci ratio: 1.807688e-01	ci left: 4.750209e-04	ci right 5.704638e-04	k: 469	n:900000
ARHGEF18   900000 perm   516 sec   (1745 perm/sec)   p_kst 5.211111e-04   p_cons 1.494144e-01   p_joint 1.174444e-03

Joint ci ratio: 1.197114e-01	ci left: 1.106456e-03	ci right 1.248398e-03	k: 1070	n:910000
Cons ci ratio: 9.804223e-03	ci left: 1.486901e-01	ci right 1.501561e-01	k: 135974	n:910000
KS ci ratio: 1.790621e-01	ci left: 4.792457e-04	ci right 5.745299e-04	k: 478	n:910000
ARHGEF18   910000 perm   525 sec   (1733 perm/sec)   p_kst 5.252747e-04   p_cons 1.494220e-01   p_joint 1.175824e-03

Joint ci ratio: 1.243929e-01	ci left: 1.011177e-03	ci right 1.146344e-03	k: 991	n:920000
Cons ci ratio: 9.302415e-03	ci left: 1.610350e-01	ci right 1.625411e-01	k: 148844	n:920000
KS ci ratio: 1.775850e-01	ci left: 4.823441e-04	ci right 5.773683e-04	k: 486	n:920000
ARHGEF18   920000 perm   534 sec   (1721 perm/sec)   p_kst 5.282609e-04   p_cons 1.617870e-01   p_joint 1.077174e-03

Joint ci ratio: 1.249624e-01	ci left: 9.909278e-04	ci right 1.124039e-03	k: 982	n:930000
Cons ci ratio: 9.251346e-03	ci left: 1.610660e-01	ci right 1.625641e-01	k: 150487	n:930000
KS ci ratio: 1.765010e-01	ci left: 4.833233e-04	ci right 5.778972e-04	k: 492	n:930000
ARHGEF18   930000 perm   544 sec   (1711 perm/sec)   p_kst 5.290323e-04   p_cons 1.618140e-01   p_joint 1.055914e-03

Joint ci ratio: 1.243944e-01	ci left: 9.896619e-04	ci right 1.121954e-03	k: 991	n:940000
Cons ci ratio: 9.199233e-03	ci left: 1.611516e-01	ci right 1.626420e-01	k: 152182	n:940000
KS ci ratio: 1.754366e-01	ci left: 4.842835e-04	ci right 5.784132e-04	k: 498	n:940000
ARHGEF18   940000 perm   554 sec   (1696 perm/sec)   p_kst 5.297872e-04   p_cons 1.618957e-01   p_joint 1.054255e-03

Joint ci ratio: 1.235255e-01	ci left: 9.935244e-04	ci right 1.125338e-03	k: 1005	n:950000
Cons ci ratio: 9.151396e-03	ci left: 1.611346e-01	ci right 1.626170e-01	k: 153781	n:950000
KS ci ratio: 1.735338e-01	ci left: 4.902592e-04	ci right 5.844086e-04	k: 509	n:950000
ARHGEF18   950000 perm   563 sec   (1686 perm/sec)   p_kst 5.357895e-04   p_cons 1.618747e-01   p_joint 1.057895e-03

Joint ci ratio: 1.229162e-01	ci left: 9.932707e-04	ci right 1.124353e-03	k: 1015	n:960000
Cons ci ratio: 9.103879e-03	ci left: 1.611304e-01	ci right 1.626050e-01	k: 155392	n:960000
KS ci ratio: 1.725219e-01	ci left: 4.911316e-04	ci right 5.848413e-04	k: 515	n:960000
ARHGEF18   960000 perm   573 sec   (1676 perm/sec)   p_kst 5.364583e-04   p_cons 1.618667e-01   p_joint 1.057292e-03

Joint ci ratio: 1.223157e-01	ci left: 9.930239e-04	ci right 1.123387e-03	k: 1025	n:970000
Cons ci ratio: 9.056372e-03	ci left: 1.611479e-01	ci right 1.626150e-01	k: 157024	n:970000
KS ci ratio: 1.721888e-01	ci left: 4.880413e-04	ci right 5.809629e-04	k: 517	n:970000
ARHGEF18   970000 perm   583 sec   (1664 perm/sec)   p_kst 5.329897e-04   p_cons 1.618804e-01   p_joint 1.056701e-03

Joint ci ratio: 1.215480e-01	ci left: 9.957518e-04	ci right 1.125594e-03	k: 1038	n:980000
Cons ci ratio: 9.010448e-03	ci left: 1.611396e-01	ci right 1.625991e-01	k: 158631	n:980000
KS ci ratio: 1.713638e-01	ci left: 4.879440e-04	ci right 5.803558e-04	k: 522	n:980000
ARHGEF18   980000 perm   593 sec   (1654 perm/sec)   p_kst 5.326531e-04   p_cons 1.618684e-01   p_joint 1.059184e-03

Joint ci ratio: 1.221979e-01	ci left: 9.749207e-04	ci right 1.102775e-03	k: 1027	n:990000
Cons ci ratio: 8.965149e-03	ci left: 1.611335e-01	ci right 1.625856e-01	k: 160240	n:990000
KS ci ratio: 1.705505e-01	ci left: 4.878496e-04	ci right 5.797601e-04	k: 527	n:990000
ARHGEF18   990000 perm   604 sec   (1640 perm/sec)   p_kst 5.323232e-04   p_cons 1.618586e-01   p_joint 1.037374e-03

Joint ci ratio: 1.214908e-01	ci left: 9.768058e-04	ci right 1.104113e-03	k: 1039	n:1000000
Cons ci ratio: 8.920033e-03	ci left: 1.611426e-01	ci right 1.625874e-01	k: 161864	n:1000000
KS ci ratio: 1.697487e-01	ci left: 4.877582e-04	ci right 5.791752e-04	k: 532	n:1000000
ARHGEF18   1000000 perm   613 sec   (1630 perm/sec)   p_kst 5.320000e-04   p_cons 1.618640e-01   p_joint 1.039000e-03

Joint ci ratio: 1.212001e-01	ci left: 9.719345e-04	ci right 1.098282e-03	k: 1044	n:1010000
Cons ci ratio: 8.876239e-03	ci left: 1.611317e-01	ci right 1.625693e-01	k: 163468	n:1010000
KS ci ratio: 1.694314e-01	ci left: 4.848250e-04	ci right 5.755050e-04	k: 534	n:1010000
ARHGEF18   1010000 perm   623 sec   (1621 perm/sec)   p_kst 5.287129e-04   p_cons 1.618495e-01   p_joint 1.033663e-03

Joint ci ratio: 1.214920e-01	ci left: 9.576522e-04	ci right 1.082464e-03	k: 1039	n:1020000
Cons ci ratio: 8.832126e-03	ci left: 1.611504e-01	ci right 1.625810e-01	k: 165102	n:1020000
KS ci ratio: 1.686452e-01	ci left: 4.847664e-04	ci right 5.749720e-04	k: 539	n:1020000
ARHGEF18   1020000 perm   634 sec   (1608 perm/sec)   p_kst 5.284314e-04   p_cons 1.618647e-01   p_joint 1.018627e-03

Joint ci ratio: 1.211433e-01	ci left: 9.540029e-04	ci right 1.077957e-03	k: 1045	n:1030000
Cons ci ratio: 8.789923e-03	ci left: 1.611300e-01	ci right 1.625535e-01	k: 166696	n:1030000
KS ci ratio: 1.677160e-01	ci left: 4.856400e-04	ci right 5.754599e-04	k: 545	n:1030000
ARHGEF18   1030000 perm   645 sec   (1597 perm/sec)   p_kst 5.291262e-04   p_cons 1.618408e-01   p_joint 1.014563e-03

Joint ci ratio: 1.204542e-01	ci left: 9.560197e-04	ci right 1.079479e-03	k: 1057	n:1040000
Cons ci ratio: 8.748164e-03	ci left: 1.611148e-01	ci right 1.625314e-01	k: 168295	n:1040000
KS ci ratio: 1.669533e-01	ci left: 4.855767e-04	ci right 5.749355e-04	k: 550	n:1040000
ARHGEF18   1040000 perm   655 sec   (1588 perm/sec)   p_kst 5.288462e-04   p_cons 1.618221e-01   p_joint 1.016346e-03

Joint ci ratio: 1.201709e-01	ci left: 9.515332e-04	ci right 1.074103e-03	k: 1062	n:1050000
Cons ci ratio: 8.707238e-03	ci left: 1.610923e-01	ci right 1.625020e-01	k: 169886	n:1050000
KS ci ratio: 1.669537e-01	ci left: 4.809521e-04	ci right 5.694600e-04	k: 550	n:1050000
ARHGEF18   1050000 perm   665 sec   (1579 perm/sec)   p_kst 5.238095e-04   p_cons 1.617962e-01   p_joint 1.011429e-03

Joint ci ratio: 1.204554e-01	ci left: 9.379810e-04	ci right 1.059112e-03	k: 1057	n:1060000
Cons ci ratio: 8.667757e-03	ci left: 1.610429e-01	ci right 1.624458e-01	k: 171448	n:1060000
KS ci ratio: 1.662013e-01	ci left: 4.809352e-04	ci right 5.690012e-04	k: 555	n:1060000
ARHGEF18   1060000 perm   675 sec   (1570 perm/sec)   p_kst 5.235849e-04   p_cons 1.617434e-01   p_joint 9.971698e-04

Joint ci ratio: 1.197779e-01	ci left: 9.400929e-04	ci right 1.060765e-03	k: 1069	n:1070000
Cons ci ratio: 8.628866e-03	ci left: 1.609926e-01	ci right 1.623887e-01	k: 173008	n:1070000
KS ci ratio: 1.648720e-01	ci left: 4.845033e-04	ci right 5.724427e-04	k: 564	n:1070000
ARHGEF18   1070000 perm   685 sec   (1561 perm/sec)   p_kst 5.271028e-04   p_cons 1.616897e-01   p_joint 9.990654e-04

Joint ci ratio: 1.225017e-01	ci left: 8.891869e-04	ci right 1.006109e-03	k: 1022	n:1080000
Cons ci ratio: 8.588470e-03	ci left: 1.610070e-01	ci right 1.623967e-01	k: 174637	n:1080000
KS ci ratio: 1.637168e-01	ci left: 4.871200e-04	ci right 5.748540e-04	k: 572	n:1080000
ARHGEF18   1080000 perm   696 sec   (1553 perm/sec)   p_kst 5.296296e-04   p_cons 1.617009e-01   p_joint 9.462963e-04

Joint ci ratio: 1.219073e-01	ci left: 8.899231e-04	ci right 1.006333e-03	k: 1032	n:1090000
Cons ci ratio: 8.548029e-03	ci left: 1.610404e-01	ci right 1.624238e-01	k: 176287	n:1090000
KS ci ratio: 1.625856e-01	ci left: 4.896909e-04	ci right 5.772189e-04	k: 580	n:1090000
ARHGEF18   1090000 perm   707 sec   (1542 perm/sec)   p_kst 5.321101e-04   p_cons 1.617312e-01   p_joint 9.467890e-04

Joint ci ratio: 1.220854e-01	ci left: 8.791886e-04	ci right 9.943744e-04	k: 1029	n:1100000
Cons ci ratio: 8.509979e-03	ci left: 1.610151e-01	ci right 1.623921e-01	k: 177873	n:1100000
KS ci ratio: 1.616148e-01	ci left: 4.913447e-04	ci right 5.785929e-04	k: 587	n:1100000
ARHGEF18   1100000 perm   717 sec   (1533 perm/sec)   p_kst 5.336364e-04   p_cons 1.617027e-01   p_joint 9.354545e-04

Joint ci ratio: 1.222643e-01	ci left: 8.686476e-04	ci right 9.826311e-04	k: 1026	n:1110000
Cons ci ratio: 8.473419e-03	ci left: 1.609589e-01	ci right 1.623294e-01	k: 179424	n:1110000
KS ci ratio: 1.607964e-01	ci left: 4.921055e-04	ci right 5.790037e-04	k: 593	n:1110000
ARHGEF18   1110000 perm   728 sec   (1524 perm/sec)   p_kst 5.342342e-04   p_cons 1.616432e-01   p_joint 9.243243e-04

Joint ci ratio: 1.218499e-01	ci left: 8.669509e-04	ci right 9.802984e-04	k: 1033	n:1120000
Cons ci ratio: 8.436658e-03	ci left: 1.609250e-01	ci right 1.622893e-01	k: 180999	n:1120000
KS ci ratio: 1.599904e-01	ci left: 4.928538e-04	ci right 5.794060e-04	k: 599	n:1120000
ARHGEF18   1120000 perm   739 sec   (1516 perm/sec)   p_kst 5.348214e-04   p_cons 1.616063e-01   p_joint 9.223214e-04

Joint ci ratio: 1.212068e-01	ci left: 8.687174e-04	ci right 9.816535e-04	k: 1044	n:1130000
Cons ci ratio: 8.400097e-03	ci left: 1.609006e-01	ci right 1.622587e-01	k: 182584	n:1130000
KS ci ratio: 1.590651e-01	ci left: 4.944397e-04	ci right 5.807202e-04	k: 606	n:1130000
ARHGEF18   1130000 perm   749 sec   (1508 perm/sec)   p_kst 5.362832e-04   p_cons 1.615788e-01   p_joint 9.238938e-04

Joint ci ratio: 1.204596e-01	ci left: 8.721560e-04	ci right 9.847904e-04	k: 1057	n:1140000
Cons ci ratio: 8.362004e-03	ci left: 1.609414e-01	ci right 1.622937e-01	k: 184243	n:1140000
KS ci ratio: 1.580269e-01	ci left: 4.968417e-04	ci right 5.829218e-04	k: 614	n:1140000
ARHGEF18   1140000 perm   761 sec   (1498 perm/sec)   p_kst 5.385965e-04   p_cons 1.616167e-01   p_joint 9.271930e-04

Joint ci ratio: 1.198381e-01	ci left: 8.738499e-04	ci right 9.860795e-04	k: 1068	n:1150000
Cons ci ratio: 8.325546e-03	ci left: 1.609450e-01	ci right 1.622914e-01	k: 185860	n:1150000
KS ci ratio: 1.573885e-01	ci left: 4.966976e-04	ci right 5.823722e-04	k: 619	n:1150000
ARHGEF18   1150000 perm   772 sec   (1490 perm/sec)   p_kst 5.382609e-04   p_cons 1.616174e-01   p_joint 9.286957e-04

Joint ci ratio: 1.196148e-01	ci left: 8.696616e-04	ci right 9.811304e-04	k: 1072	n:1160000
Cons ci ratio: 8.289930e-03	ci left: 1.609366e-01	ci right 1.622772e-01	k: 187463	n:1160000
KS ci ratio: 1.571355e-01	ci left: 4.940720e-04	ci right 5.791438e-04	k: 621	n:1160000
ARHGEF18   1160000 perm   783 sec   (1482 perm/sec)   p_kst 5.353448e-04   p_cons 1.616060e-01   p_joint 9.241379e-04

Joint ci ratio: 1.195039e-01	ci left: 8.638867e-04	ci right 9.745054e-04	k: 1074	n:1170000
Cons ci ratio: 8.253205e-03	ci left: 1.609795e-01	ci right 1.623145e-01	k: 189126	n:1170000
KS ci ratio: 1.568837e-01	ci left: 4.914913e-04	ci right 5.759704e-04	k: 623	n:1170000
ARHGEF18   1170000 perm   794 sec   (1474 perm/sec)   p_kst 5.324786e-04   p_cons 1.616462e-01   p_joint 9.179487e-04

Joint ci ratio: 1.079569e-01	ci left: 1.055837e-03	ci right 1.177142e-03	k: 1316	n:1180000
Cons ci ratio: 8.217709e-03	ci left: 1.609972e-01	ci right 1.623265e-01	k: 190760	n:1180000
KS ci ratio: 1.620318e-01	ci left: 4.555931e-04	ci right 5.367219e-04	k: 584	n:1180000
ARHGEF18   1180000 perm   805 sec   (1467 perm/sec)   p_kst 4.949153e-04   p_cons 1.616610e-01   p_joint 1.115254e-03

Joint ci ratio: 1.418680e-01	ci left: 5.956851e-04	ci right 6.874459e-04	k: 762	n:1190000
Cons ci ratio: 8.579600e-03	ci left: 1.486031e-01	ci right 1.498843e-01	k: 177599	n:1190000
KS ci ratio: 1.612071e-01	ci left: 4.566027e-04	ci right 5.374574e-04	k: 590	n:1190000
ARHGEF18   1190000 perm   816 sec   (1458 perm/sec)   p_kst 4.957983e-04   p_cons 1.492429e-01   p_joint 6.403361e-04

Joint ci ratio: 1.421483e-01	ci left: 5.883097e-04	ci right 6.791286e-04	k: 759	n:1200000
Cons ci ratio: 8.543397e-03	ci left: 1.486170e-01	ci right 1.498930e-01	k: 179105	n:1200000
KS ci ratio: 1.601268e-01	ci left: 4.591963e-04	ci right 5.399130e-04	k: 598	n:1200000
ARHGEF18   1200000 perm   827 sec   (1450 perm/sec)   p_kst 4.983333e-04   p_cons 1.492542e-01   p_joint 6.325000e-04

Joint ci ratio: 1.417758e-01	ci left: 5.866360e-04	ci right 6.769391e-04	k: 763	n:1210000
Cons ci ratio: 8.508728e-03	ci left: 1.485986e-01	ci right 1.498692e-01	k: 180572	n:1210000
KS ci ratio: 1.595949e-01	ci left: 4.585748e-04	ci right 5.388889e-04	k: 602	n:1210000
ARHGEF18   1210000 perm   838 sec   (1443 perm/sec)   p_kst 4.975207e-04   p_cons 1.492331e-01   p_joint 6.305785e-04

Joint ci ratio: 1.413142e-01	ci left: 5.857807e-04	ci right 6.756339e-04	k: 768	n:1220000
Cons ci ratio: 8.475079e-03	ci left: 1.485625e-01	ci right 1.498277e-01	k: 182017	n:1220000
KS ci ratio: 1.594630e-01	ci left: 4.556029e-04	ci right 5.353242e-04	k: 603	n:1220000
ARHGEF18   1220000 perm   850 sec   (1436 perm/sec)   p_kst 4.942623e-04   p_cons 1.491943e-01   p_joint 6.295082e-04

Joint ci ratio: 1.408571e-01	ci left: 5.849398e-04	ci right 6.743494e-04	k: 773	n:1230000
Cons ci ratio: 8.441286e-03	ci left: 1.485432e-01	ci right 1.498032e-01	k: 183482	n:1230000
KS ci ratio: 1.588070e-01	ci left: 4.558020e-04	ci right 5.351987e-04	k: 608	n:1230000
ARHGEF18   1230000 perm   861 sec   (1428 perm/sec)   p_kst 4.943089e-04   p_cons 1.491724e-01   p_joint 6.284553e-04

Joint ci ratio: 1.425255e-01	ci left: 5.662206e-04	ci right 6.538812e-04	k: 755	n:1240000
Cons ci ratio: 8.407734e-03	ci left: 1.485290e-01	ci right 1.497839e-01	k: 184953	n:1240000
KS ci ratio: 1.582881e-01	ci left: 4.552240e-04	ci right 5.342363e-04	k: 612	n:1240000
ARHGEF18   1240000 perm   873 sec   (1421 perm/sec)   p_kst 4.935484e-04   p_cons 1.491556e-01   p_joint 6.088710e-04

Joint ci ratio: 1.420566e-01	ci left: 5.655484e-04	ci right 6.527924e-04	k: 760	n:1250000
Cons ci ratio: 8.373681e-03	ci left: 1.485423e-01	ci right 1.497921e-01	k: 186458	n:1250000
KS ci ratio: 1.580307e-01	ci left: 4.531188e-04	ci right 5.316258e-04	k: 614	n:1250000
ARHGEF18   1250000 perm   885 sec   (1413 perm/sec)   p_kst 4.912000e-04   p_cons 1.491664e-01   p_joint 6.080000e-04

Joint ci ratio: 1.413156e-01	ci left: 5.671841e-04	ci right 6.541856e-04	k: 768	n:1260000
Cons ci ratio: 8.340221e-03	ci left: 1.485498e-01	ci right 1.497947e-01	k: 187956	n:1260000
KS ci ratio: 1.572653e-01	ci left: 4.540967e-04	ci right 5.323561e-04	k: 620	n:1260000
ARHGEF18   1260000 perm   896 sec   (1406 perm/sec)   p_kst 4.920635e-04   p_cons 1.491714e-01   p_joint 6.095238e-04

Joint ci ratio: 1.446480e-01	ci left: 5.361442e-04	ci right 6.204912e-04	k: 733	n:1270000
Cons ci ratio: 8.308447e-03	ci left: 1.485179e-01	ci right 1.497577e-01	k: 189404	n:1270000
KS ci ratio: 1.567614e-01	ci left: 4.535470e-04	ci right 5.314376e-04	k: 624	n:1270000
ARHGEF18   1270000 perm   908 sec   (1398 perm/sec)   p_kst 4.913386e-04   p_cons 1.491370e-01   p_joint 5.771654e-04

Joint ci ratio: 1.442555e-01	ci left: 5.349676e-04	ci right 6.188815e-04	k: 737	n:1280000
Cons ci ratio: 8.275964e-03	ci left: 1.485192e-01	ci right 1.497542e-01	k: 190894	n:1280000
KS ci ratio: 1.563866e-01	ci left: 4.522556e-04	ci right 5.297213e-04	k: 627	n:1280000
ARHGEF18   1280000 perm   920 sec   (1391 perm/sec)   p_kst 4.898438e-04   p_cons 1.491359e-01   p_joint 5.757813e-04

Joint ci ratio: 1.440607e-01	ci left: 5.323150e-04	ci right 6.156903e-04	k: 739	n:1290000
Cons ci ratio: 8.243455e-03	ci left: 1.485330e-01	ci right 1.497632e-01	k: 192400	n:1290000
KS ci ratio: 1.558910e-01	ci left: 4.517293e-04	ci right 5.288367e-04	k: 631	n:1290000
ARHGEF18   1290000 perm   932 sec   (1385 perm/sec)   p_kst 4.891473e-04   p_cons 1.491473e-01   p_joint 5.728682e-04

Joint ci ratio: 1.433840e-01	ci left: 5.334112e-04	ci right 6.165323e-04	k: 746	n:1300000
Cons ci ratio: 8.211203e-03	ci left: 1.485503e-01	ci right 1.497759e-01	k: 193911	n:1300000
KS ci ratio: 1.547925e-01	ci left: 4.549085e-04	ci right 5.319607e-04	k: 640	n:1300000
ARHGEF18   1300000 perm   944 sec   (1378 perm/sec)   p_kst 4.923077e-04   p_cons 1.491623e-01   p_joint 5.738462e-04

Joint ci ratio: 1.449459e-01	ci left: 5.175659e-04	ci right 5.991724e-04	k: 730	n:1310000
Cons ci ratio: 8.178982e-03	ci left: 1.485781e-01	ci right 1.497990e-01	k: 195436	n:1310000
KS ci ratio: 1.535987e-01	ci left: 4.587751e-04	ci right 5.358277e-04	k: 650	n:1310000
ARHGEF18   1310000 perm   955 sec   (1371 perm/sec)   p_kst 4.961832e-04   p_cons 1.491878e-01   p_joint 5.572519e-04

Joint ci ratio: 1.446496e-01	ci left: 5.158353e-04	ci right 5.969882e-04	k: 733	n:1320000
Cons ci ratio: 8.147671e-03	ci left: 1.485888e-01	ci right 1.498052e-01	k: 196939	n:1320000
KS ci ratio: 1.533634e-01	ci left: 4.567564e-04	ci right 5.333417e-04	k: 652	n:1320000
ARHGEF18   1320000 perm   968 sec   (1364 perm/sec)   p_kst 4.939394e-04   p_cons 1.491962e-01   p_joint 5.553030e-04

Joint ci ratio: 1.441594e-01	ci left: 5.155804e-04	ci right 5.963947e-04	k: 738	n:1330000
Cons ci ratio: 8.117680e-03	ci left: 1.485694e-01	ci right 1.497810e-01	k: 198402	n:1330000
KS ci ratio: 1.526636e-01	ci left: 4.576607e-04	ci right 5.340155e-04	k: 658	n:1330000
ARHGEF18   1330000 perm   980 sec   (1358 perm/sec)   p_kst 4.947368e-04   p_cons 1.491744e-01   p_joint 5.548872e-04

Joint ci ratio: 1.270695e-01	ci left: 6.645985e-04	ci right 7.554924e-04	k: 950	n:1340000
Cons ci ratio: 8.086804e-03	ci left: 1.485882e-01	ci right 1.497954e-01	k: 199916	n:1340000
KS ci ratio: 1.519733e-01	ci left: 4.585523e-04	ci right 5.346784e-04	k: 664	n:1340000
ARHGEF18   1340000 perm   992 sec   (1351 perm/sec)   p_kst 4.955224e-04   p_cons 1.491910e-01   p_joint 7.089552e-04

Joint ci ratio: 1.263408e-01	ci left: 6.675655e-04	ci right 7.583024e-04	k: 961	n:1350000
Cons ci ratio: 8.055996e-03	ci left: 1.486156e-01	ci right 1.498185e-01	k: 201442	n:1350000
KS ci ratio: 1.511796e-01	ci left: 4.601442e-04	ci right 5.360995e-04	k: 671	n:1350000
ARHGEF18   1350000 perm   1004 sec   (1345 perm/sec)   p_kst 4.970370e-04   p_cons 1.492163e-01   p_joint 7.118519e-04

Joint ci ratio: 1.285670e-01	ci left: 6.391652e-04	ci right 7.276895e-04	k: 928	n:1360000
Cons ci ratio: 8.025445e-03	ci left: 1.486456e-01	ci right 1.498441e-01	k: 202972	n:1360000
KS ci ratio: 1.508434e-01	ci left: 4.588833e-04	ci right 5.344468e-04	k: 674	n:1360000
ARHGEF18   1360000 perm   1016 sec   (1338 perm/sec)   p_kst 4.955882e-04   p_cons 1.492441e-01   p_joint 6.823529e-04

Joint ci ratio: 1.282225e-01	ci left: 6.380321e-04	ci right 7.261447e-04	k: 933	n:1370000
Cons ci ratio: 7.996319e-03	ci left: 1.486409e-01	ci right 1.498350e-01	k: 204455	n:1370000
KS ci ratio: 1.503985e-01	ci left: 4.583434e-04	ci right 5.335754e-04	k: 678	n:1370000
ARHGEF18   1370000 perm   1028 sec   (1332 perm/sec)   p_kst 4.948905e-04   p_cons 1.492372e-01   p_joint 6.810219e-04

Joint ci ratio: 1.274065e-01	ci left: 6.418264e-04	ci right 7.298562e-04	k: 945	n:1380000
Cons ci ratio: 7.967030e-03	ci left: 1.486515e-01	ci right 1.498413e-01	k: 205959	n:1380000
KS ci ratio: 1.499575e-01	ci left: 4.578117e-04	ci right 5.327163e-04	k: 682	n:1380000
ARHGEF18   1380000 perm   1041 sec   (1326 perm/sec)   p_kst 4.942029e-04   p_cons 1.492457e-01   p_joint 6.847826e-04

Joint ci ratio: 1.270712e-01	ci left: 6.406915e-04	ci right 7.283171e-04	k: 950	n:1390000
Cons ci ratio: 7.938352e-03	ci left: 1.486526e-01	ci right 1.498381e-01	k: 207450	n:1390000
KS ci ratio: 1.495203e-01	ci left: 4.572880e-04	ci right 5.318693e-04	k: 686	n:1390000
ARHGEF18   1390000 perm   1053 sec   (1320 perm/sec)   p_kst 4.935252e-04   p_cons 1.492446e-01   p_joint 6.834532e-04

Joint ci ratio: 1.266722e-01	ci left: 6.402649e-04	ci right 7.275365e-04	k: 956	n:1400000
Cons ci ratio: 7.911140e-03	ci left: 1.486166e-01	ci right 1.497977e-01	k: 208889	n:1400000
KS ci ratio: 1.489792e-01	ci left: 4.574597e-04	ci right 5.317749e-04	k: 691	n:1400000
ARHGEF18   1400000 perm   1066 sec   (1314 perm/sec)   p_kst 4.935714e-04   p_cons 1.492064e-01   p_joint 6.828571e-04

Joint ci ratio: 1.285686e-01	ci left: 6.164993e-04	ci right 7.018855e-04	k: 928	n:1410000
Cons ci ratio: 7.884051e-03	ci left: 1.485861e-01	ci right 1.497629e-01	k: 210335	n:1410000
KS ci ratio: 1.485505e-01	ci left: 4.569466e-04	ci right 5.309459e-04	k: 695	n:1410000
ARHGEF18   1410000 perm   1078 sec   (1308 perm/sec)   p_kst 4.929078e-04   p_cons 1.491738e-01   p_joint 6.581560e-04

Joint ci ratio: 1.281555e-01	ci left: 6.162474e-04	ci right 7.013036e-04	k: 934	n:1420000
Cons ci ratio: 7.855974e-03	ci left: 1.485968e-01	ci right 1.497694e-01	k: 211839	n:1420000
KS ci ratio: 1.481255e-01	ci left: 4.564410e-04	ci right 5.301282e-04	k: 699	n:1420000
ARHGEF18   1420000 perm   1091 sec   (1302 perm/sec)   p_kst 4.922535e-04   p_cons 1.491824e-01   p_joint 6.577465e-04

Joint ci ratio: 1.276784e-01	ci left: 6.166764e-04	ci right 7.014510e-04	k: 941	n:1430000
Cons ci ratio: 7.827915e-03	ci left: 1.486164e-01	ci right 1.497850e-01	k: 213356	n:1430000
KS ci ratio: 1.477041e-01	ci left: 4.559428e-04	ci right 5.293217e-04	k: 703	n:1430000
ARHGEF18   1430000 perm   1103 sec   (1296 perm/sec)   p_kst 4.916084e-04   p_cons 1.492000e-01   p_joint 6.580420e-04

Joint ci ratio: 1.206426e-01	ci left: 6.884324e-04	ci right 7.774843e-04	k: 1054	n:1440000
Cons ci ratio: 7.992879e-03	ci left: 1.425541e-01	ci right 1.436987e-01	k: 206101	n:1440000
KS ci ratio: 1.472863e-01	ci left: 4.554518e-04	ci right 5.285261e-04	k: 707	n:1440000
ARHGEF18   1440000 perm   1116 sec   (1290 perm/sec)   p_kst 4.909722e-04   p_cons 1.431257e-01   p_joint 7.319444e-04

Joint ci ratio: 1.204716e-01	ci left: 6.856911e-04	ci right 7.742538e-04	k: 1057	n:1450000
Cons ci ratio: 7.963731e-03	ci left: 1.426034e-01	ci right 1.437442e-01	k: 207601	n:1450000
KS ci ratio: 1.469754e-01	ci left: 4.543035e-04	ci right 5.270262e-04	k: 710	n:1450000
ARHGEF18   1450000 perm   1129 sec   (1285 perm/sec)   p_kst 4.896552e-04   p_cons 1.431731e-01   p_joint 7.289655e-04

Joint ci ratio: 1.204719e-01	ci left: 6.809945e-04	ci right 7.689508e-04	k: 1057	n:1460000
Cons ci ratio: 7.935475e-03	ci left: 1.426342e-01	ci right 1.437713e-01	k: 209075	n:1460000
KS ci ratio: 1.460537e-01	ci left: 4.571303e-04	ci right 5.298065e-04	k: 719	n:1460000
ARHGEF18   1460000 perm   1141 sec   (1279 perm/sec)   p_kst 4.924658e-04   p_cons 1.432021e-01   p_joint 7.239726e-04

Joint ci ratio: 1.215695e-01	ci left: 6.638276e-04	ci right 7.504040e-04	k: 1038	n:1470000
Cons ci ratio: 7.907912e-03	ci left: 1.426525e-01	ci right 1.437857e-01	k: 210531	n:1470000
KS ci ratio: 1.456497e-01	ci left: 4.566423e-04	ci right 5.290227e-04	k: 723	n:1470000
ARHGEF18   1470000 perm   1155 sec   (1273 perm/sec)   p_kst 4.918367e-04   p_cons 1.432184e-01   p_joint 7.061224e-04

Joint ci ratio: 1.211620e-01	ci left: 6.639284e-04	ci right 7.502069e-04	k: 1045	n:1480000
Cons ci ratio: 7.882370e-03	ci left: 1.426165e-01	ci right 1.437457e-01	k: 211907	n:1480000
KS ci ratio: 1.451494e-01	ci left: 4.568124e-04	ci right 5.289495e-04	k: 728	n:1480000
ARHGEF18   1480000 perm   1168 sec   (1268 perm/sec)   p_kst 4.918919e-04   p_cons 1.431804e-01   p_joint 7.060811e-04

Joint ci ratio: 1.221598e-01	ci left: 6.484100e-04	ci right 7.334159e-04	k: 1028	n:1490000
Cons ci ratio: 7.856236e-03	ci left: 1.426071e-01	ci right 1.437325e-01	k: 213322	n:1490000
KS ci ratio: 1.445557e-01	ci left: 4.576275e-04	ci right 5.295721e-04	k: 734	n:1490000
ARHGEF18   1490000 perm   1181 sec   (1262 perm/sec)   p_kst 4.926174e-04   p_cons 1.431691e-01   p_joint 6.899329e-04

Joint ci ratio: 1.216289e-01	ci left: 6.499044e-04	ci right 7.347093e-04	k: 1037	n:1500000
Cons ci ratio: 7.829594e-03	ci left: 1.426218e-01	ci right 1.437435e-01	k: 214773	n:1500000
KS ci ratio: 1.441640e-01	ci left: 4.571470e-04	ci right 5.288046e-04	k: 738	n:1500000
ARHGEF18   1500000 perm   1194 sec   (1256 perm/sec)   p_kst 4.920000e-04   p_cons 1.431820e-01   p_joint 6.913333e-04

Joint ci ratio: 1.211050e-01	ci left: 6.513797e-04	ci right 7.359848e-04	k: 1046	n:1510000
Cons ci ratio: 7.803411e-03	ci left: 1.426304e-01	ci right 1.437484e-01	k: 216215	n:1510000
KS ci ratio: 1.438723e-01	ci left: 4.560346e-04	ci right 5.273609e-04	k: 741	n:1510000
ARHGEF18   1510000 perm   1207 sec   (1251 perm/sec)   p_kst 4.907285e-04   p_cons 1.431887e-01   p_joint 6.927152e-04

Joint ci ratio: 1.207595e-01	ci left: 6.509223e-04	ci right 7.352095e-04	k: 1052	n:1520000
Cons ci ratio: 7.777614e-03	ci left: 1.426350e-01	ci right 1.437493e-01	k: 217651	n:1520000
KS ci ratio: 1.435824e-01	ci left: 4.549371e-04	ci right 5.259360e-04	k: 744	n:1520000
ARHGEF18   1520000 perm   1221 sec   (1245 perm/sec)   p_kst 4.894737e-04   p_cons 1.431914e-01   p_joint 6.921053e-04

Joint ci ratio: 1.204169e-01	ci left: 6.504712e-04	ci right 7.344440e-04	k: 1058	n:1530000
Cons ci ratio: 7.752009e-03	ci left: 1.426414e-01	ci right 1.437521e-01	k: 219090	n:1530000
KS ci ratio: 1.431986e-01	ci left: 4.544842e-04	ci right 5.252067e-04	k: 748	n:1530000
ARHGEF18   1530000 perm   1234 sec   (1239 perm/sec)   p_kst 4.888889e-04   p_cons 1.431961e-01   p_joint 6.915033e-04

Joint ci ratio: 1.205883e-01	ci left: 6.443579e-04	ci right 7.276683e-04	k: 1055	n:1540000
Cons ci ratio: 7.726287e-03	ci left: 1.426594e-01	ci right 1.437666e-01	k: 220547	n:1540000
KS ci ratio: 1.429127e-01	ci left: 4.534113e-04	ci right 5.238140e-04	k: 751	n:1540000
ARHGEF18   1540000 perm   1248 sec   (1234 perm/sec)   p_kst 4.876623e-04   p_cons 1.432123e-01   p_joint 6.850649e-04

Joint ci ratio: 1.219245e-01	ci left: 6.258117e-04	ci right 7.076856e-04	k: 1032	n:1550000
Cons ci ratio: 7.701124e-03	ci left: 1.426676e-01	ci right 1.437712e-01	k: 221989	n:1550000
KS ci ratio: 1.425342e-01	ci left: 4.529746e-04	ci right 5.231073e-04	k: 755	n:1550000
ARHGEF18   1550000 perm   1262 sec   (1228 perm/sec)   p_kst 4.870968e-04   p_cons 1.432187e-01   p_joint 6.658065e-04

Joint ci ratio: 1.217480e-01	ci left: 6.236645e-04	ci right 7.051308e-04	k: 1035	n:1560000
Cons ci ratio: 7.677427e-03	ci left: 1.426366e-01	ci right 1.437365e-01	k: 223370	n:1560000
KS ci ratio: 1.423462e-01	ci left: 4.513073e-04	ci right 5.210818e-04	k: 757	n:1560000
ARHGEF18   1560000 perm   1276 sec   (1223 perm/sec)   p_kst 4.852564e-04   p_cons 1.431859e-01   p_joint 6.634615e-04

Joint ci ratio: 1.211645e-01	ci left: 6.258681e-04	ci right 7.072023e-04	k: 1045	n:1570000
Cons ci ratio: 7.653372e-03	ci left: 1.426244e-01	ci right 1.437208e-01	k: 224780	n:1570000
KS ci ratio: 1.418790e-01	ci left: 4.515042e-04	ci right 5.210607e-04	k: 762	n:1570000
ARHGEF18   1570000 perm   1290 sec   (1217 perm/sec)   p_kst 4.853503e-04   p_cons 1.431720e-01   p_joint 6.656051e-04

Joint ci ratio: 1.208185e-01	ci left: 6.255895e-04	ci right 7.066387e-04	k: 1051	n:1580000
Cons ci ratio: 7.629955e-03	ci left: 1.425992e-01	ci right 1.436920e-01	k: 226169	n:1580000
KS ci ratio: 1.415086e-01	ci left: 4.510884e-04	ci right 5.203842e-04	k: 766	n:1580000
ARHGEF18   1580000 perm   1304 sec   (1212 perm/sec)   p_kst 4.848101e-04   p_cons 1.431449e-01   p_joint 6.651899e-04

Joint ci ratio: 1.204185e-01	ci left: 6.259246e-04	ci right 7.067297e-04	k: 1058	n:1590000
Cons ci ratio: 7.604568e-03	ci left: 1.426446e-01	ci right 1.437341e-01	k: 227670	n:1590000
KS ci ratio: 1.412327e-01	ci left: 4.500714e-04	ci right 5.190648e-04	k: 769	n:1590000
ARHGEF18   1590000 perm   1318 sec   (1206 perm/sec)   p_kst 4.836478e-04   p_cons 1.431887e-01   p_joint 6.654088e-04

Joint ci ratio: 1.221033e-01	ci left: 6.044369e-04	ci right 6.836387e-04	k: 1029	n:1600000
Cons ci ratio: 7.580243e-03	ci left: 1.426632e-01	ci right 1.437493e-01	k: 229129	n:1600000
KS ci ratio: 1.407764e-01	ci left: 4.502733e-04	ci right 5.190558e-04	k: 774	n:1600000
ARHGEF18   1600000 perm   1332 sec   (1201 perm/sec)   p_kst 4.837500e-04   p_cons 1.432056e-01   p_joint 6.431250e-04

Joint ci ratio: 1.215147e-01	ci left: 6.067046e-04	ci right 6.857928e-04	k: 1039	n:1610000
Cons ci ratio: 7.557260e-03	ci left: 1.426456e-01	ci right 1.437283e-01	k: 230530	n:1610000
KS ci ratio: 1.403245e-01	ci left: 4.504729e-04	ci right 5.190466e-04	k: 779	n:1610000
ARHGEF18   1610000 perm   1347 sec   (1196 perm/sec)   p_kst 4.838509e-04   p_cons 1.431863e-01   p_joint 6.453416e-04

Joint ci ratio: 1.211657e-01	ci left: 6.065508e-04	ci right 6.853755e-04	k: 1045	n:1620000
Cons ci ratio: 7.533422e-03	ci left: 1.426628e-01	ci right 1.437422e-01	k: 231987	n:1620000
KS ci ratio: 1.398769e-01	ci left: 4.506705e-04	ci right 5.190371e-04	k: 784	n:1620000
ARHGEF18   1620000 perm   1361 sec   (1190 perm/sec)   p_kst 4.839506e-04   p_cons 1.432019e-01   p_joint 6.450617e-04

Joint ci ratio: 1.209348e-01	ci left: 6.052093e-04	ci right 6.836991e-04	k: 1049	n:1630000
Cons ci ratio: 7.510823e-03	ci left: 1.426467e-01	ci right 1.437227e-01	k: 233390	n:1630000
KS ci ratio: 1.398771e-01	ci left: 4.479056e-04	ci right 5.158529e-04	k: 784	n:1630000
ARHGEF18   1630000 perm   1376 sec   (1185 perm/sec)   p_kst 4.809816e-04   p_cons 1.431840e-01   p_joint 6.435583e-04

Joint ci ratio: 1.205908e-01	ci left: 6.050670e-04	ci right 6.832992e-04	k: 1055	n:1640000
Cons ci ratio: 7.488892e-03	ci left: 1.426155e-01	ci right 1.436882e-01	k: 234768	n:1640000
KS ci ratio: 1.395221e-01	ci left: 4.475282e-04	ci right 5.152317e-04	k: 788	n:1640000
ARHGEF18   1640000 perm   1390 sec   (1180 perm/sec)   p_kst 4.804878e-04   p_cons 1.431512e-01   p_joint 6.432927e-04

Joint ci ratio: 1.201365e-01	ci left: 6.061025e-04	ci right 6.841523e-04	k: 1063	n:1650000
Cons ci ratio: 7.465491e-03	ci left: 1.426392e-01	ci right 1.437087e-01	k: 236236	n:1650000
KS ci ratio: 1.388199e-01	ci left: 4.494956e-04	ci right 5.171262e-04	k: 796	n:1650000
ARHGEF18   1650000 perm   1405 sec   (1174 perm/sec)   p_kst 4.824242e-04   p_cons 1.431733e-01   p_joint 6.442424e-04

Joint ci ratio: 1.201933e-01	ci left: 6.018669e-04	ci right 6.794105e-04	k: 1062	n:1660000
Cons ci ratio: 7.441358e-03	ci left: 1.426939e-01	ci right 1.437603e-01	k: 237756	n:1660000
KS ci ratio: 1.384729e-01	ci left: 4.491139e-04	ci right 5.165042e-04	k: 800	n:1660000
ARHGEF18   1660000 perm   1420 sec   (1169 perm/sec)   p_kst 4.819277e-04   p_cons 1.432265e-01   p_joint 6.397590e-04

Joint ci ratio: 1.198555e-01	ci left: 6.017478e-04	ci right 6.790428e-04	k: 1068	n:1670000
Cons ci ratio: 7.419068e-03	ci left: 1.426948e-01	ci right 1.437580e-01	k: 239187	n:1670000
KS ci ratio: 1.383005e-01	ci left: 4.475807e-04	ci right 5.146504e-04	k: 802	n:1670000
ARHGEF18   1670000 perm   1435 sec   (1164 perm/sec)   p_kst 4.802395e-04   p_cons 1.432257e-01   p_joint 6.395210e-04

Joint ci ratio: 1.194095e-01	ci left: 6.027854e-04	ci right 6.799052e-04	k: 1076	n:1680000
Cons ci ratio: 7.396080e-03	ci left: 1.427253e-01	ci right 1.437854e-01	k: 240668	n:1680000
KS ci ratio: 1.378719e-01	ci left: 4.477899e-04	ci right 5.146660e-04	k: 807	n:1680000
ARHGEF18   1680000 perm   1450 sec   (1159 perm/sec)   p_kst 4.803571e-04   p_cons 1.432548e-01   p_joint 6.404762e-04

Joint ci ratio: 1.190783e-01	ci left: 6.026631e-04	ci right 6.795383e-04	k: 1082	n:1690000
Cons ci ratio: 7.374122e-03	ci left: 1.427283e-01	ci right 1.437853e-01	k: 242103	n:1690000
KS ci ratio: 1.375319e-01	ci left: 4.474256e-04	ci right 5.140690e-04	k: 811	n:1690000
ARHGEF18   1690000 perm   1465 sec   (1154 perm/sec)   p_kst 4.798817e-04   p_cons 1.432562e-01   p_joint 6.402367e-04

Joint ci ratio: 1.192991e-01	ci left: 5.968351e-04	ci right 6.731181e-04	k: 1078	n:1700000
Cons ci ratio: 7.352341e-03	ci left: 1.427319e-01	ci right 1.437858e-01	k: 243539	n:1700000
KS ci ratio: 1.371945e-01	ci left: 4.470657e-04	ci right 5.134788e-04	k: 815	n:1700000
ARHGEF18   1700000 perm   1480 sec   (1149 perm/sec)   p_kst 4.794118e-04   p_cons 1.432582e-01   p_joint 6.341176e-04

Joint ci ratio: 1.191338e-01	ci left: 5.950468e-04	ci right 6.709884e-04	k: 1081	n:1710000
Cons ci ratio: 7.330700e-03	ci left: 1.427372e-01	ci right 1.437880e-01	k: 244978	n:1710000
KS ci ratio: 1.370268e-01	ci left: 4.455807e-04	ci right 5.116857e-04	k: 817	n:1710000
ARHGEF18   1710000 perm   1495 sec   (1144 perm/sec)   p_kst 4.777778e-04   p_cons 1.432620e-01   p_joint 6.321637e-04

Joint ci ratio: 1.044999e-01	ci left: 7.747171e-04	ci right 8.606989e-04	k: 1405	n:1720000
Cons ci ratio: 7.309438e-03	ci left: 1.427360e-01	ci right 1.437838e-01	k: 246406	n:1720000
KS ci ratio: 1.366099e-01	ci left: 4.457976e-04	ci right 5.117172e-04	k: 822	n:1720000
ARHGEF18   1720000 perm   1510 sec   (1139 perm/sec)   p_kst 4.779070e-04   p_cons 1.432593e-01   p_joint 8.168605e-04

Joint ci ratio: 1.043517e-01	ci left: 7.724907e-04	ci right 8.580964e-04	k: 1409	n:1730000
Cons ci ratio: 7.288550e-03	ci left: 1.427286e-01	ci right 1.437732e-01	k: 247823	n:1730000
KS ci ratio: 1.364443e-01	ci left: 4.443373e-04	ci right 5.099549e-04	k: 824	n:1730000
ARHGEF18   1730000 perm   1525 sec   (1134 perm/sec)   p_kst 4.763006e-04   p_cons 1.432503e-01   p_joint 8.144509e-04

Joint ci ratio: 1.040569e-01	ci left: 7.725290e-04	ci right 8.578822e-04	k: 1417	n:1740000
Cons ci ratio: 7.267329e-03	ci left: 1.427384e-01	ci right 1.437800e-01	k: 249270	n:1740000
KS ci ratio: 1.359508e-01	ci left: 4.451145e-04	ci right 5.105898e-04	k: 830	n:1740000
ARHGEF18   1740000 perm   1540 sec   (1130 perm/sec)   p_kst 4.770115e-04   p_cons 1.432586e-01   p_joint 8.143678e-04

Joint ci ratio: 1.036918e-01	ci left: 7.736804e-04	ci right 8.588427e-04	k: 1427	n:1750000
Cons ci ratio: 7.247879e-03	ci left: 1.426945e-01	ci right 1.437330e-01	k: 250623	n:1750000
KS ci ratio: 1.354626e-01	ci left: 4.458831e-04	ci right 5.112170e-04	k: 836	n:1750000
ARHGEF18   1750000 perm   1556 sec   (1125 perm/sec)   p_kst 4.777143e-04   p_cons 1.432131e-01   p_joint 8.154286e-04

Joint ci ratio: 1.048372e-01	ci left: 7.521297e-04	ci right 8.358907e-04	k: 1396	n:1760000
Cons ci ratio: 7.227278e-03	ci left: 1.426953e-01	ci right 1.437309e-01	k: 252054	n:1760000
KS ci ratio: 1.350598e-01	ci left: 4.460945e-04	ci right 5.112493e-04	k: 841	n:1760000
ARHGEF18   1760000 perm   1571 sec   (1120 perm/sec)   p_kst 4.778409e-04   p_cons 1.432125e-01   p_joint 7.931818e-04

Joint ci ratio: 1.065692e-01	ci left: 7.231281e-04	ci right 8.050732e-04	k: 1351	n:1770000
Cons ci ratio: 7.206039e-03	ci left: 1.427238e-01	ci right 1.437565e-01	k: 253534	n:1770000
KS ci ratio: 1.347401e-01	ci left: 4.457578e-04	ci right 5.106970e-04	k: 845	n:1770000
ARHGEF18   1770000 perm   1587 sec   (1115 perm/sec)   p_kst 4.774011e-04   p_cons 1.432395e-01   p_joint 7.632768e-04

Joint ci ratio: 1.065694e-01	ci left: 7.190655e-04	ci right 8.005504e-04	k: 1351	n:1780000
Cons ci ratio: 7.185841e-03	ci left: 1.427227e-01	ci right 1.437526e-01	k: 254962	n:1780000
KS ci ratio: 1.344227e-01	ci left: 4.454251e-04	ci right 5.101508e-04	k: 849	n:1780000
ARHGEF18   1780000 perm   1603 sec   (1110 perm/sec)   p_kst 4.769663e-04   p_cons 1.432371e-01   p_joint 7.589888e-04

Joint ci ratio: 1.063338e-01	ci left: 7.183111e-04	ci right 7.995193e-04	k: 1357	n:1790000
Cons ci ratio: 7.165861e-03	ci left: 1.427201e-01	ci right 1.437470e-01	k: 256387	n:1790000
KS ci ratio: 1.342650e-01	ci left: 4.440164e-04	ci right 5.084556e-04	k: 851	n:1790000
ARHGEF18   1790000 perm   1618 sec   (1106 perm/sec)   p_kst 4.754190e-04   p_cons 1.432330e-01   p_joint 7.581006e-04

Joint ci ratio: 1.060997e-01	ci left: 7.175652e-04	ci right 7.984994e-04	k: 1363	n:1800000
Cons ci ratio: 7.145901e-03	ci left: 1.427224e-01	ci right 1.437465e-01	k: 257821	n:1800000
KS ci ratio: 1.338727e-01	ci left: 4.442343e-04	ci right 5.085018e-04	k: 856	n:1800000
ARHGEF18   1800000 perm   1634 sec   (1102 perm/sec)   p_kst 4.755556e-04   p_cons 1.432339e-01   p_joint 7.572222e-04

Joint ci ratio: 1.058672e-01	ci left: 7.168278e-04	ci right 7.974906e-04	k: 1369	n:1810000
Cons ci ratio: 7.126380e-03	ci left: 1.427154e-01	ci right 1.437366e-01	k: 259238	n:1810000
KS ci ratio: 1.333292e-01	ci left: 4.455181e-04	ci right 5.096889e-04	k: 863	n:1810000
ARHGEF18   1810000 perm   1650 sec   (1097 perm/sec)   p_kst 4.767956e-04   p_cons 1.432254e-01   p_joint 7.563536e-04

Joint ci ratio: 1.060224e-01	ci left: 7.107495e-04	ci right 7.908529e-04	k: 1365	n:1820000
Cons ci ratio: 7.107336e-03	ci left: 1.426974e-01	ci right 1.437158e-01	k: 260635	n:1820000
KS ci ratio: 1.329451e-01	ci left: 4.457259e-04	ci right 5.097272e-04	k: 868	n:1820000
ARHGEF18   1820000 perm   1666 sec   (1092 perm/sec)   p_kst 4.769231e-04   p_cons 1.432060e-01   p_joint 7.500000e-04

Joint ci ratio: 1.059838e-01	ci left: 7.073976e-04	ci right 7.870923e-04	k: 1366	n:1830000
Cons ci ratio: 7.087276e-03	ci left: 1.427201e-01	ci right 1.437357e-01	k: 262106	n:1830000
KS ci ratio: 1.326402e-01	ci left: 4.454034e-04	ci right 5.092001e-04	k: 872	n:1830000
ARHGEF18   1830000 perm   1683 sec   (1087 perm/sec)   p_kst 4.765027e-04   p_cons 1.432273e-01   p_joint 7.464481e-04

Joint ci ratio: 1.058292e-01	ci left: 7.056693e-04	ci right 7.850461e-04	k: 1370	n:1840000
Cons ci ratio: 7.067964e-03	ci left: 1.427224e-01	ci right 1.437353e-01	k: 263540	n:1840000
KS ci ratio: 1.325644e-01	ci left: 4.435082e-04	ci right 5.069943e-04	k: 873	n:1840000
ARHGEF18   1840000 perm   1700 sec   (1082 perm/sec)   p_kst 4.744565e-04   p_cons 1.432283e-01   p_joint 7.445652e-04

Joint ci ratio: 1.055600e-01	ci left: 7.055386e-04	ci right 7.846864e-04	k: 1377	n:1850000
Cons ci ratio: 7.048172e-03	ci left: 1.427468e-01	ci right 1.437570e-01	k: 265015	n:1850000
KS ci ratio: 1.323376e-01	ci left: 4.426787e-04	ci right 5.059291e-04	k: 876	n:1850000
ARHGEF18   1850000 perm   1720 sec   (1075 perm/sec)   p_kst 4.735135e-04   p_cons 1.432514e-01   p_joint 7.443243e-04

Joint ci ratio: 1.052549e-01	ci left: 7.059331e-04	ci right 7.848821e-04	k: 1385	n:1860000
Cons ci ratio: 7.029501e-03	ci left: 1.427377e-01	ci right 1.437451e-01	k: 266428	n:1860000
KS ci ratio: 1.318125e-01	ci left: 4.439379e-04	ci right 5.070967e-04	k: 883	n:1860000
ARHGEF18   1860000 perm   1739 sec   (1070 perm/sec)   p_kst 4.747312e-04   p_cons 1.432409e-01   p_joint 7.446237e-04

Joint ci ratio: 1.050657e-01	ci left: 7.047615e-04	ci right 7.834289e-04	k: 1390	n:1870000
Cons ci ratio: 7.010977e-03	ci left: 1.427287e-01	ci right 1.437334e-01	k: 267841	n:1870000
KS ci ratio: 1.313674e-01	ci left: 4.446668e-04	ci right 5.076991e-04	k: 889	n:1870000
ARHGEF18   1870000 perm   1756 sec   (1065 perm/sec)   p_kst 4.754011e-04   p_cons 1.432305e-01   p_joint 7.433155e-04

Joint ci ratio: 1.048398e-01	ci left: 7.041205e-04	ci right 7.825370e-04	k: 1396	n:1880000
Cons ci ratio: 6.991219e-03	ci left: 1.427681e-01	ci right 1.437702e-01	k: 269345	n:1880000
KS ci ratio: 1.312938e-01	ci left: 4.428160e-04	ci right 5.055480e-04	k: 890	n:1880000
ARHGEF18   1880000 perm   1773 sec   (1060 perm/sec)   p_kst 4.734043e-04   p_cons 1.432686e-01   p_joint 7.425532e-04

Joint ci ratio: 1.045782e-01	ci left: 7.040017e-04	ci right 7.821973e-04	k: 1403	n:1890000
Cons ci ratio: 6.972875e-03	ci left: 1.427632e-01	ci right 1.437627e-01	k: 270766	n:1890000
KS ci ratio: 1.310734e-01	ci left: 4.420082e-04	ci right 5.045125e-04	k: 893	n:1890000
ARHGEF18   1890000 perm   1789 sec   (1056 perm/sec)   p_kst 4.724868e-04   p_cons 1.432624e-01   p_joint 7.423280e-04

Joint ci ratio: 1.066509e-01	ci left: 6.726254e-04	ci right 7.489097e-04	k: 1349	n:1900000
Cons ci ratio: 6.953586e-03	ci left: 1.427968e-01	ci right 1.437937e-01	k: 272260	n:1900000
KS ci ratio: 1.307084e-01	ci left: 4.422273e-04	ci right 5.045749e-04	k: 898	n:1900000
ARHGEF18   1900000 perm   1807 sec   (1052 perm/sec)   p_kst 4.726316e-04   p_cons 1.432947e-01   p_joint 7.100000e-04

Joint ci ratio: 1.062190e-01	ci left: 6.747097e-04	ci right 7.509011e-04	k: 1360	n:1910000
Cons ci ratio: 6.934752e-03	ci left: 1.428196e-01	ci right 1.438140e-01	k: 273734	n:1910000
KS ci ratio: 1.302743e-01	ci left: 4.429508e-04	ci right 5.051770e-04	k: 904	n:1910000
ARHGEF18   1910000 perm   1824 sec   (1047 perm/sec)   p_kst 4.732984e-04   p_cons 1.433162e-01   p_joint 7.120419e-04

Joint ci ratio: 1.059856e-01	ci left: 6.742377e-04	ci right 7.501980e-04	k: 1366	n:1920000
Cons ci ratio: 6.916027e-03	ci left: 1.428437e-01	ci right 1.438355e-01	k: 275211	n:1920000
KS ci ratio: 1.301307e-01	ci left: 4.416515e-04	ci right 5.036214e-04	k: 906	n:1920000
ARHGEF18   1920000 perm   1841 sec   (1043 perm/sec)   p_kst 4.718750e-04   p_cons 1.433391e-01   p_joint 7.114583e-04

Joint ci ratio: 1.055617e-01	ci left: 6.762930e-04	ci right 7.521612e-04	k: 1377	n:1930000
Cons ci ratio: 6.898762e-03	ci left: 1.428210e-01	ci right 1.438102e-01	k: 276598	n:1930000
KS ci ratio: 1.294190e-01	ci left: 4.443763e-04	ci right 5.063614e-04	k: 916	n:1930000
ARHGEF18   1930000 perm   1858 sec   (1039 perm/sec)   p_kst 4.746114e-04   p_cons 1.433150e-01   p_joint 7.134715e-04

Joint ci ratio: 1.053707e-01	ci left: 6.753162e-04	ci right 7.509293e-04	k: 1382	n:1940000
Cons ci ratio: 6.881770e-03	ci left: 1.427933e-01	ci right 1.437799e-01	k: 277975	n:1940000
KS ci ratio: 1.289278e-01	ci left: 4.455774e-04	ci right 5.074761e-04	k: 923	n:1940000
ARHGEF18   1940000 perm   1875 sec   (1035 perm/sec)   p_kst 4.757732e-04   p_cons 1.432861e-01   p_joint 7.123711e-04

Joint ci ratio: 1.051429e-01	ci left: 6.748490e-04	ci right 7.502363e-04	k: 1388	n:1950000
Cons ci ratio: 6.863899e-03	ci left: 1.428018e-01	ci right 1.437859e-01	k: 279422	n:1950000
KS ci ratio: 1.285804e-01	ci left: 4.457739e-04	ci right 5.075203e-04	k: 928	n:1950000
ARHGEF18   1950000 perm   1893 sec   (1030 perm/sec)   p_kst 4.758974e-04   p_cons 1.432933e-01   p_joint 7.117949e-04

Joint ci ratio: 1.049543e-01	ci left: 6.738899e-04	ci right 7.490266e-04	k: 1393	n:1960000
Cons ci ratio: 6.846863e-03	ci left: 1.427853e-01	ci right 1.437668e-01	k: 280820	n:1960000
KS ci ratio: 1.283045e-01	ci left: 4.454747e-04	ci right 5.070372e-04	k: 932	n:1960000
ARHGEF18   1960000 perm   1911 sec   (1026 perm/sec)   p_kst 4.755102e-04   p_cons 1.432755e-01   p_joint 7.107143e-04

Joint ci ratio: 1.052571e-01	ci left: 6.665148e-04	ci right 7.410570e-04	k: 1385	n:1970000
Cons ci ratio: 6.828796e-03	ci left: 1.428105e-01	ci right 1.437895e-01	k: 282300	n:1970000
KS ci ratio: 1.277578e-01	ci left: 4.471443e-04	ci right 5.086543e-04	k: 940	n:1970000
ARHGEF18   1970000 perm   1928 sec   (1022 perm/sec)   p_kst 4.771574e-04   p_cons 1.432995e-01   p_joint 7.030457e-04

Joint ci ratio: 1.049923e-01	ci left: 6.665910e-04	ci right 7.409425e-04	k: 1392	n:1980000
Cons ci ratio: 6.811250e-03	ci left: 1.428218e-01	ci right 1.437984e-01	k: 283753	n:1980000
KS ci ratio: 1.276223e-01	ci left: 4.458638e-04	ci right 5.071277e-04	k: 942	n:1980000
ARHGEF18   1980000 perm   1945 sec   (1018 perm/sec)   p_kst 4.757576e-04   p_cons 1.433096e-01   p_joint 7.030303e-04

Joint ci ratio: 1.046921e-01	ci left: 6.671560e-04	ci right 7.413447e-04	k: 1400	n:1990000
Cons ci ratio: 6.793518e-03	ci left: 1.428446e-01	ci right 1.438188e-01	k: 285229	n:1990000
KS ci ratio: 1.271512e-01	ci left: 4.470288e-04	ci right 5.082089e-04	k: 949	n:1990000
ARHGEF18   1990000 perm   1964 sec   (1013 perm/sec)   p_kst 4.768844e-04   p_cons 1.433312e-01   p_joint 7.035176e-04

Joint ci ratio: 1.047297e-01	ci left: 6.633332e-04	ci right 7.371249e-04	k: 1399	n:2000000
Cons ci ratio: 6.776752e-03	ci left: 1.428371e-01	ci right 1.438089e-01	k: 286645	n:2000000
KS ci ratio: 1.268844e-01	ci left: 4.467301e-04	ci right 5.077314e-04	k: 953	n:2000000
ARHGEF18   2000000 perm   1982 sec   (1009 perm/sec)   p_kst 4.765000e-04   p_cons 1.433225e-01   p_joint 6.995000e-04

Joint ci ratio: 1.043946e-01	ci left: 6.643936e-04	ci right 7.380523e-04	k: 1408	n:2010000
Cons ci ratio: 6.759986e-03	ci left: 1.428343e-01	ci right 1.438036e-01	k: 288070	n:2010000
KS ci ratio: 1.264872e-01	ci left: 4.473981e-04	ci right 5.082850e-04	k: 959	n:2010000
ARHGEF18   2010000 perm   2001 sec   (1005 perm/sec)   p_kst 4.771144e-04   p_cons 1.433184e-01   p_joint 7.004975e-04

Joint ci ratio: 1.046927e-01	ci left: 6.572475e-04	ci right 7.303348e-04	k: 1400	n:2020000
Cons ci ratio: 6.744350e-03	ci left: 1.427948e-01	ci right 1.437616e-01	k: 289421	n:2020000
KS ci ratio: 1.260285e-01	ci left: 4.485392e-04	ci right 5.093435e-04	k: 966	n:2020000
ARHGEF18   2020000 perm   2023 sec   (998 perm/sec)   p_kst 4.782178e-04   p_cons 1.432777e-01   p_joint 6.930693e-04

Joint ci ratio: 1.040997e-01	ci left: 6.616859e-04	ci right 7.348245e-04	k: 1416	n:2030000
Cons ci ratio: 6.727999e-03	ci left: 1.427858e-01	ci right 1.437502e-01	k: 290833	n:2030000
KS ci ratio: 1.257039e-01	ci left: 4.487151e-04	ci right 5.093749e-04	k: 971	n:2030000
ARHGEF18   2030000 perm   2043 sec   (994 perm/sec)   p_kst 4.783251e-04   p_cons 1.432675e-01   p_joint 6.975369e-04

Joint ci ratio: 1.037706e-01	ci left: 6.627395e-04	ci right 7.357488e-04	k: 1425	n:2040000
Cons ci ratio: 6.711819e-03	ci left: 1.427749e-01	ci right 1.437369e-01	k: 292241	n:2040000
KS ci ratio: 1.254461e-01	ci left: 4.484147e-04	ci right 5.089004e-04	k: 975	n:2040000
ARHGEF18   2040000 perm   2063 sec   (989 perm/sec)   p_kst 4.779412e-04   p_cons 1.432554e-01   p_joint 6.985294e-04

Joint ci ratio: 1.034807e-01	ci left: 6.633079e-04	ci right 7.361633e-04	k: 1433	n:2050000
Cons ci ratio: 6.695729e-03	ci left: 1.427651e-01	ci right 1.437247e-01	k: 293651	n:2050000
KS ci ratio: 1.248715e-01	ci left: 4.504801e-04	ci right 5.109455e-04	k: 984	n:2050000
ARHGEF18   2050000 perm   2082 sec   (984 perm/sec)   p_kst 4.800000e-04   p_cons 1.432444e-01   p_joint 6.990244e-04

Joint ci ratio: 1.031932e-01	ci left: 6.638711e-04	ci right 7.365735e-04	k: 1441	n:2060000
Cons ci ratio: 6.679160e-03	ci left: 1.427772e-01	ci right 1.437345e-01	k: 295106	n:2060000
KS ci ratio: 1.244301e-01	ci left: 4.515855e-04	ci right 5.119691e-04	k: 991	n:2060000
ARHGEF18   2060000 perm   2102 sec   (980 perm/sec)   p_kst 4.810680e-04   p_cons 1.432553e-01   p_joint 6.995146e-04

Joint ci ratio: 9.509089e-02	ci left: 7.812763e-04	ci right 8.597445e-04	k: 1697	n:2070000
Cons ci ratio: 6.662935e-03	ci left: 1.427810e-01	ci right 1.437360e-01	k: 296544	n:2070000
KS ci ratio: 1.243050e-01	ci left: 4.503400e-04	ci right 5.104921e-04	k: 993	n:2070000
ARHGEF18   2070000 perm   2121 sec   (976 perm/sec)   p_kst 4.797101e-04   p_cons 1.432580e-01   p_joint 8.198068e-04

Joint ci ratio: 9.667086e-02	ci left: 7.517113e-04	ci right 8.285357e-04	k: 1642	n:2080000
Cons ci ratio: 6.646790e-03	ci left: 1.427862e-01	ci right 1.437389e-01	k: 297985	n:2080000
KS ci ratio: 1.240556e-01	ci left: 4.500382e-04	ci right 5.100206e-04	k: 997	n:2080000
ARHGEF18   2080000 perm   2140 sec   (972 perm/sec)   p_kst 4.793269e-04   p_cons 1.432620e-01   p_joint 7.894231e-04

Joint ci ratio: 9.658284e-02	ci left: 7.495153e-04	ci right 8.260415e-04	k: 1645	n:2090000
Cons ci ratio: 6.631059e-03	ci left: 1.427803e-01	ci right 1.437307e-01	k: 299403	n:2090000
KS ci ratio: 1.239316e-01	ci left: 4.488122e-04	ci right 5.085669e-04	k: 999	n:2090000
ARHGEF18   2090000 perm   2159 sec   (968 perm/sec)   p_kst 4.779904e-04   p_cons 1.432550e-01   p_joint 7.870813e-04

Joint ci ratio: 9.667123e-02	ci left: 7.445521e-04	ci right 8.206450e-04	k: 1642	n:2100000
Cons ci ratio: 6.614681e-03	ci left: 1.428026e-01	ci right 1.437508e-01	k: 300880	n:2100000
KS ci ratio: 1.237462e-01	ci left: 4.480593e-04	ci right 5.076180e-04	k: 1002	n:2100000
ARHGEF18   2100000 perm   2178 sec   (964 perm/sec)   p_kst 4.771429e-04   p_cons 1.432762e-01   p_joint 7.819048e-04

Joint ci ratio: 9.649523e-02	ci left: 7.437983e-04	ci right 8.196680e-04	k: 1648	n:2110000
Cons ci ratio: 6.598909e-03	ci left: 1.428067e-01	ci right 1.437526e-01	k: 302319	n:2110000
KS ci ratio: 1.236231e-01	ci left: 4.468543e-04	ci right 5.061894e-04	k: 1004	n:2110000
ARHGEF18   2110000 perm   2198 sec   (960 perm/sec)   p_kst 4.758294e-04   p_cons 1.432791e-01   p_joint 7.810427e-04

Joint ci ratio: 9.629109e-02	ci left: 7.435121e-04	ci right 8.191831e-04	k: 1655	n:2120000
Cons ci ratio: 6.583172e-03	ci left: 1.428135e-01	ci right 1.437573e-01	k: 303764	n:2120000
KS ci ratio: 1.231947e-01	ci left: 4.479465e-04	ci right 5.072055e-04	k: 1011	n:2120000
ARHGEF18   2120000 perm   2220 sec   (955 perm/sec)   p_kst 4.768868e-04   p_cons 1.432849e-01   p_joint 7.806604e-04

Joint ci ratio: 9.591523e-02	ci left: 7.459781e-04	ci right 8.215870e-04	k: 1668	n:2130000
Cons ci ratio: 6.567975e-03	ci left: 1.428044e-01	ci right 1.437459e-01	k: 305175	n:2130000
KS ci ratio: 1.228311e-01	ci left: 4.485737e-04	ci right 5.077278e-04	k: 1017	n:2130000
ARHGEF18   2130000 perm   2240 sec   (951 perm/sec)   p_kst 4.774648e-04   p_cons 1.432746e-01   p_joint 7.830986e-04

Joint ci ratio: 9.582925e-02	ci left: 7.438604e-04	ci right 8.191834e-04	k: 1671	n:2140000
Cons ci ratio: 6.552771e-03	ci left: 1.427995e-01	ci right 1.437388e-01	k: 306595	n:2140000
KS ci ratio: 1.227107e-01	ci left: 4.473834e-04	ci right 5.063185e-04	k: 1019	n:2140000
ARHGEF18   2140000 perm   2260 sec   (947 perm/sec)   p_kst 4.761682e-04   p_cons 1.432687e-01   p_joint 7.808411e-04

Joint ci ratio: 9.560081e-02	ci left: 7.440324e-04	ci right 8.191832e-04	k: 1679	n:2150000
Cons ci ratio: 6.538266e-03	ci left: 1.427724e-01	ci right 1.437094e-01	k: 307967	n:2150000
KS ci ratio: 1.222917e-01	ci left: 4.484586e-04	ci right 5.073190e-04	k: 1026	n:2150000
ARHGEF18   2150000 perm   2281 sec   (942 perm/sec)   p_kst 4.772093e-04   p_cons 1.432405e-01   p_joint 7.809302e-04

Joint ci ratio: 9.548729e-02	ci left: 7.423954e-04	ci right 8.172868e-04	k: 1683	n:2160000
Cons ci ratio: 6.523389e-03	ci left: 1.427632e-01	ci right 1.436980e-01	k: 309377	n:2160000
KS ci ratio: 1.219951e-01	ci left: 4.486265e-04	ci right 5.073558e-04	k: 1031	n:2160000
ARHGEF18   2160000 perm   2302 sec   (939 perm/sec)   p_kst 4.773148e-04   p_cons 1.432301e-01   p_joint 7.791667e-04

Joint ci ratio: 9.534591e-02	ci left: 7.412234e-04	ci right 8.158796e-04	k: 1688	n:2170000
Cons ci ratio: 6.508149e-03	ci left: 1.427715e-01	ci right 1.437041e-01	k: 310825	n:2170000
KS ci ratio: 1.217006e-01	ci left: 4.487930e-04	ci right 5.073921e-04	k: 1036	n:2170000
ARHGEF18   2170000 perm   2321 sec   (935 perm/sec)   p_kst 4.774194e-04   p_cons 1.432373e-01   p_joint 7.778802e-04

Joint ci ratio: 9.506485e-02	ci left: 7.423012e-04	ci right 8.168334e-04	k: 1698	n:2180000
Cons ci ratio: 6.492760e-03	ci left: 1.427893e-01	ci right 1.437199e-01	k: 312294	n:2180000
KS ci ratio: 1.212919e-01	ci left: 4.498478e-04	ci right 5.083732e-04	k: 1043	n:2180000
ARHGEF18   2180000 perm   2341 sec   (931 perm/sec)   p_kst 4.784404e-04   p_cons 1.432541e-01   p_joint 7.788991e-04

Joint ci ratio: 9.778087e-02	ci left: 6.974690e-04	ci right 7.696152e-04	k: 1605	n:2190000
Cons ci ratio: 6.477890e-03	ci left: 1.427915e-01	ci right 1.437199e-01	k: 313729	n:2190000
KS ci ratio: 1.210602e-01	ci left: 4.495648e-04	ci right 5.079337e-04	k: 1047	n:2190000
ARHGEF18   2190000 perm   2362 sec   (927 perm/sec)   p_kst 4.780822e-04   p_cons 1.432553e-01   p_joint 7.328767e-04

Joint ci ratio: 9.750800e-02	ci left: 6.982897e-04	ci right 7.703077e-04	k: 1614	n:2200000
Cons ci ratio: 6.463146e-03	ci left: 1.427928e-01	ci right 1.437191e-01	k: 315162	n:2200000
KS ci ratio: 1.207151e-01	ci left: 4.501661e-04	ci right 5.084346e-04	k: 1053	n:2200000
ARHGEF18   2200000 perm   2382 sec   (924 perm/sec)   p_kst 4.786364e-04   p_cons 1.432555e-01   p_joint 7.336364e-04

Joint ci ratio: 9.729737e-02	ci left: 6.982203e-04	ci right 7.700667e-04	k: 1621	n:2210000
Cons ci ratio: 6.448882e-03	ci left: 1.427796e-01	ci right 1.437037e-01	k: 316563	n:2210000
KS ci ratio: 1.204867e-01	ci left: 4.498845e-04	ci right 5.079985e-04	k: 1057	n:2210000
ARHGEF18   2210000 perm   2402 sec   (920 perm/sec)   p_kst 4.782805e-04   p_cons 1.432412e-01   p_joint 7.334842e-04

Joint ci ratio: 9.699876e-02	ci left: 6.994703e-04	ci right 7.712118e-04	k: 1631	n:2220000
Cons ci ratio: 6.433850e-03	ci left: 1.427993e-01	ci right 1.437214e-01	k: 318037	n:2220000
KS ci ratio: 1.200900e-01	ci left: 4.509163e-04	ci right 5.089582e-04	k: 1064	n:2220000
ARHGEF18   2220000 perm   2422 sec   (917 perm/sec)   p_kst 4.792793e-04   p_cons 1.432599e-01   p_joint 7.346847e-04

Joint ci ratio: 9.667343e-02	ci left: 7.011469e-04	ci right 7.728056e-04	k: 1642	n:2230000
Cons ci ratio: 6.420048e-03	ci left: 1.427759e-01	ci right 1.436959e-01	k: 319415	n:2230000
KS ci ratio: 1.199213e-01	ci left: 4.501992e-04	ci right 5.080615e-04	k: 1067	n:2230000
ARHGEF18   2230000 perm   2442 sec   (913 perm/sec)   p_kst 4.784753e-04   p_cons 1.432354e-01   p_joint 7.363229e-04

Joint ci ratio: 9.664416e-02	ci left: 6.984524e-04	ci right 7.698128e-04	k: 1643	n:2240000
Cons ci ratio: 6.405962e-03	ci left: 1.427669e-01	ci right 1.436849e-01	k: 320825	n:2240000
KS ci ratio: 1.198653e-01	ci left: 4.486224e-04	ci right 5.062532e-04	k: 1068	n:2240000
ARHGEF18   2240000 perm   2463 sec   (910 perm/sec)   p_kst 4.767857e-04   p_cons 1.432254e-01   p_joint 7.334821e-04

Joint ci ratio: 9.638067e-02	ci left: 6.992516e-04	ci right 7.704879e-04	k: 1652	n:2250000
Cons ci ratio: 6.392328e-03	ci left: 1.427443e-01	ci right 1.436601e-01	k: 322204	n:2250000
KS ci ratio: 1.196417e-01	ci left: 4.483530e-04	ci right 5.058342e-04	k: 1072	n:2250000
ARHGEF18   2250000 perm   2483 sec   (906 perm/sec)   p_kst 4.764444e-04   p_cons 1.432018e-01   p_joint 7.342222e-04

Joint ci ratio: 9.705893e-02	ci left: 6.862265e-04	ci right 7.566559e-04	k: 1629	n:2260000
Cons ci ratio: 6.378181e-03	ci left: 1.427449e-01	ci right 1.436587e-01	k: 323635	n:2260000
KS ci ratio: 1.192533e-01	ci left: 4.493740e-04	ci right 5.067859e-04	k: 1079	n:2260000
ARHGEF18   2260000 perm   2503 sec   (903 perm/sec)   p_kst 4.774336e-04   p_cons 1.432013e-01   p_joint 7.207965e-04

Joint ci ratio: 9.714859e-02	ci left: 6.819140e-04	ci right 7.519690e-04	k: 1626	n:2270000
Cons ci ratio: 6.363546e-03	ci left: 1.427679e-01	ci right 1.436797e-01	k: 325117	n:2270000
KS ci ratio: 1.189782e-01	ci left: 4.495314e-04	ci right 5.068216e-04	k: 1084	n:2270000
ARHGEF18   2270000 perm   2524 sec   (900 perm/sec)   p_kst 4.775330e-04   p_cons 1.432233e-01   p_joint 7.162996e-04

Joint ci ratio: 9.682176e-02	ci left: 6.836307e-04	ci right 7.536124e-04	k: 1637	n:2280000
Cons ci ratio: 6.349193e-03	ci left: 1.427837e-01	ci right 1.436935e-01	k: 326583	n:2280000
KS ci ratio: 1.185419e-01	ci left: 4.509643e-04	ci right 5.082116e-04	k: 1092	n:2280000
ARHGEF18   2280000 perm   2545 sec   (896 perm/sec)   p_kst 4.789474e-04   p_cons 1.432382e-01   p_joint 7.179825e-04

Joint ci ratio: 9.697013e-02	ci left: 6.785148e-04	ci right 7.480853e-04	k: 1632	n:2290000
Cons ci ratio: 6.335815e-03	ci left: 1.427653e-01	ci right 1.436731e-01	k: 327971	n:2290000
KS ci ratio: 1.183796e-01	ci left: 4.502662e-04	ci right 5.073412e-04	k: 1095	n:2290000
ARHGEF18   2290000 perm   2566 sec   (892 perm/sec)   p_kst 4.781659e-04   p_cons 1.432188e-01   p_joint 7.126638e-04

Joint ci ratio: 9.676296e-02	ci left: 6.785345e-04	ci right 7.479500e-04	k: 1639	n:2300000
Cons ci ratio: 6.322107e-03	ci left: 1.427632e-01	ci right 1.436690e-01	k: 329396	n:2300000
KS ci ratio: 1.182718e-01	ci left: 4.491524e-04	ci right 5.060307e-04	k: 1097	n:2300000
ARHGEF18   2300000 perm   2587 sec   (889 perm/sec)   p_kst 4.769565e-04   p_cons 1.432157e-01   p_joint 7.126087e-04

Joint ci ratio: 9.661584e-02	ci left: 6.777093e-04	ci right 7.469289e-04	k: 1644	n:2310000
Cons ci ratio: 6.308298e-03	ci left: 1.427684e-01	ci right 1.436723e-01	k: 330838	n:2310000
KS ci ratio: 1.180570e-01	ci left: 4.488884e-04	ci right 5.056228e-04	k: 1101	n:2310000
ARHGEF18   2310000 perm   2609 sec   (886 perm/sec)   p_kst 4.766234e-04   p_cons 1.432199e-01   p_joint 7.116883e-04

Joint ci ratio: 9.635258e-02	ci left: 6.785738e-04	ci right 7.476823e-04	k: 1653	n:2320000
Cons ci ratio: 6.294547e-03	ci left: 1.427749e-01	ci right 1.436769e-01	k: 332283	n:2320000
KS ci ratio: 1.178966e-01	ci left: 4.482085e-04	ci right 5.047747e-04	k: 1104	n:2320000
ARHGEF18   2320000 perm   2629 sec   (882 perm/sec)   p_kst 4.758621e-04   p_cons 1.432254e-01   p_joint 7.125000e-04

Joint ci ratio: 9.652809e-02	ci left: 6.731484e-04	ci right 7.418363e-04	k: 1647	n:2330000
Cons ci ratio: 6.281148e-03	ci left: 1.427710e-01	ci right 1.436710e-01	k: 333704	n:2330000
KS ci ratio: 1.176308e-01	ci left: 4.483676e-04	ci right 5.048173e-04	k: 1109	n:2330000
ARHGEF18   2330000 perm   2650 sec   (879 perm/sec)   p_kst 4.759657e-04   p_cons 1.432206e-01   p_joint 7.068670e-04

Joint ci ratio: 9.620747e-02	ci left: 6.748593e-04	ci right 7.434801e-04	k: 1658	n:2340000
Cons ci ratio: 6.268184e-03	ci left: 1.427536e-01	ci right 1.436516e-01	k: 335093	n:2340000
KS ci ratio: 1.172616e-01	ci left: 4.493550e-04	ci right 5.057393e-04	k: 1116	n:2340000
ARHGEF18   2340000 perm   2672 sec   (876 perm/sec)   p_kst 4.769231e-04   p_cons 1.432021e-01   p_joint 7.085470e-04

Joint ci ratio: 9.632389e-02	ci left: 6.703263e-04	ci right 7.385733e-04	k: 1654	n:2350000
Cons ci ratio: 6.255127e-03	ci left: 1.427430e-01	ci right 1.436391e-01	k: 336498	n:2350000
KS ci ratio: 1.170000e-01	ci left: 4.495082e-04	ci right 5.057772e-04	k: 1121	n:2350000
ARHGEF18   2350000 perm   2693 sec   (873 perm/sec)   p_kst 4.770213e-04   p_cons 1.431906e-01   p_joint 7.038298e-04

Joint ci ratio: 9.676384e-02	ci left: 6.612833e-04	ci right 7.289346e-04	k: 1639	n:2360000
Cons ci ratio: 6.241913e-03	ci left: 1.427419e-01	ci right 1.436361e-01	k: 337925	n:2360000
KS ci ratio: 1.167920e-01	ci left: 4.492489e-04	ci right 5.053785e-04	k: 1125	n:2360000
ARHGEF18   2360000 perm   2715 sec   (869 perm/sec)   p_kst 4.766949e-04   p_cons 1.431886e-01   p_joint 6.944915e-04

Joint ci ratio: 9.661671e-02	ci left: 6.605518e-04	ci right 7.280197e-04	k: 1644	n:2370000
Cons ci ratio: 6.228280e-03	ci left: 1.427606e-01	ci right 1.436529e-01	k: 339399	n:2370000
KS ci ratio: 1.166885e-01	ci left: 4.481725e-04	ci right 5.041146e-04	k: 1127	n:2370000
ARHGEF18   2370000 perm   2736 sec   (866 perm/sec)   p_kst 4.755274e-04   p_cons 1.432063e-01   p_joint 6.936709e-04

Joint ci ratio: 9.641180e-02	ci left: 6.606465e-04	ci right 7.279729e-04	k: 1651	n:2380000
Cons ci ratio: 6.214448e-03	ci left: 1.427905e-01	ci right 1.436810e-01	k: 340900	n:2380000
KS ci ratio: 1.165853e-01	ci left: 4.471053e-04	ci right 5.028614e-04	k: 1129	n:2380000
ARHGEF18   2380000 perm   2758 sec   (863 perm/sec)   p_kst 4.743697e-04   p_cons 1.432353e-01   p_joint 6.936975e-04

Joint ci ratio: 9.612125e-02	ci left: 6.619657e-04	ci right 7.292118e-04	k: 1661	n:2390000
Cons ci ratio: 6.201670e-03	ci left: 1.427821e-01	ci right 1.436707e-01	k: 342310	n:2390000
KS ci ratio: 1.164308e-01	ci left: 4.464532e-04	ci right 5.020491e-04	k: 1132	n:2390000
ARHGEF18   2390000 perm   2779 sec   (860 perm/sec)   p_kst 4.736402e-04   p_cons 1.432259e-01   p_joint 6.949791e-04

Joint ci ratio: 9.594823e-02	ci left: 6.616475e-04	ci right 7.287334e-04	k: 1667	n:2400000
Cons ci ratio: 6.189043e-03	ci left: 1.427708e-01	ci right 1.436576e-01	k: 343713	n:2400000
KS ci ratio: 1.160728e-01	ci left: 4.474248e-04	ci right 5.029587e-04	k: 1139	n:2400000
ARHGEF18   2400000 perm   2801 sec   (857 perm/sec)   p_kst 4.745833e-04   p_cons 1.432138e-01   p_joint 6.945833e-04

Joint ci ratio: 9.563333e-02	ci left: 6.633571e-04	ci right 7.303832e-04	k: 1678	n:2410000
Cons ci ratio: 6.176494e-03	ci left: 1.427596e-01	ci right 1.436445e-01	k: 345116	n:2410000
KS ci ratio: 1.159204e-01	ci left: 4.467770e-04	ci right 5.021527e-04	k: 1142	n:2410000
ARHGEF18   2410000 perm   2822 sec   (854 perm/sec)   p_kst 4.738589e-04   p_cons 1.432017e-01   p_joint 6.962656e-04

Joint ci ratio: 9.635400e-02	ci left: 6.505331e-04	ci right 7.167868e-04	k: 1653	n:2420000
Cons ci ratio: 6.163917e-03	ci left: 1.427527e-01	ci right 1.436357e-01	k: 346529	n:2420000
KS ci ratio: 1.158698e-01	ci left: 4.453320e-04	ci right 5.005029e-04	k: 1143	n:2420000
ARHGEF18   2420000 perm   2844 sec   (851 perm/sec)   p_kst 4.723140e-04   p_cons 1.431938e-01   p_joint 6.830579e-04

Joint ci ratio: 9.650021e-02	ci left: 6.458480e-04	ci right 7.117300e-04	k: 1648	n:2430000
Cons ci ratio: 6.150921e-03	ci left: 1.427656e-01	ci right 1.436468e-01	k: 347990	n:2430000
KS ci ratio: 1.156174e-01	ci left: 4.454974e-04	ci right 5.005603e-04	k: 1148	n:2430000
ARHGEF18   2430000 perm   2866 sec   (848 perm/sec)   p_kst 4.724280e-04   p_cons 1.432058e-01   p_joint 6.781893e-04

Joint ci ratio: 9.629603e-02	ci left: 6.460007e-04	ci right 7.117510e-04	k: 1655	n:2440000
Cons ci ratio: 6.138274e-03	ci left: 1.427677e-01	ci right 1.436471e-01	k: 349425	n:2440000
KS ci ratio: 1.153667e-01	ci left: 4.456616e-04	ci right 5.006172e-04	k: 1153	n:2440000
ARHGEF18   2440000 perm   2889 sec   (845 perm/sec)   p_kst 4.725410e-04   p_cons 1.432070e-01   p_joint 6.782787e-04

Joint ci ratio: 9.618000e-02	ci left: 6.449573e-04	ci right 7.105179e-04	k: 1659	n:2450000
Cons ci ratio: 6.125602e-03	ci left: 1.427738e-01	ci right 1.436515e-01	k: 350870	n:2450000
KS ci ratio: 1.152170e-01	ci left: 4.450317e-04	ci right 4.998337e-04	k: 1156	n:2450000
ARHGEF18   2450000 perm   2911 sec   (842 perm/sec)   p_kst 4.718367e-04   p_cons 1.432122e-01   p_joint 6.771429e-04

Joint ci ratio: 9.606438e-02	ci left: 6.439225e-04	ci right 7.092947e-04	k: 1663	n:2460000
Cons ci ratio: 6.112958e-03	ci left: 1.427820e-01	ci right 1.436579e-01	k: 352320	n:2460000
KS ci ratio: 1.150184e-01	ci left: 4.448019e-04	ci right 4.994746e-04	k: 1160	n:2460000
ARHGEF18   2460000 perm   2933 sec   (839 perm/sec)   p_kst 4.715447e-04   p_cons 1.432195e-01   p_joint 6.760163e-04

Joint ci ratio: 6.873726e-02	ci left: 1.269772e-03	ci right 1.360554e-03	k: 3247	n:2470000
Cons ci ratio: 5.675052e-03	ci left: 1.614356e-01	ci right 1.623547e-01	k: 399880	n:2470000
KS ci ratio: 1.148701e-01	ci left: 4.441807e-04	ci right 4.987020e-04	k: 1163	n:2470000
ARHGEF18   2470000 perm   2956 sec   (836 perm/sec)   p_kst 4.708502e-04   p_cons 1.618947e-01   p_joint 1.314575e-03

Joint ci ratio: 6.856854e-02	ci left: 1.270993e-03	ci right 1.361630e-03	k: 3263	n:2480000
Cons ci ratio: 5.662984e-03	ci left: 1.614659e-01	ci right 1.623833e-01	k: 401572	n:2480000
KS ci ratio: 1.146242e-01	ci left: 4.443479e-04	ci right 4.987650e-04	k: 1168	n:2480000
ARHGEF18   2480000 perm   2980 sec   (832 perm/sec)   p_kst 4.709677e-04   p_cons 1.619242e-01   p_joint 1.315726e-03

Joint ci ratio: 6.844286e-02	ci left: 1.270625e-03	ci right 1.361063e-03	k: 3275	n:2490000
Cons ci ratio: 5.651678e-03	ci left: 1.614631e-01	ci right 1.623786e-01	k: 403182	n:2490000
KS ci ratio: 1.145753e-01	ci left: 4.429535e-04	ci right 4.971751e-04	k: 1169	n:2490000
ARHGEF18   2490000 perm   3002 sec   (830 perm/sec)   p_kst 4.694779e-04   p_cons 1.619205e-01   p_joint 1.315261e-03

Joint ci ratio: 6.831787e-02	ci left: 1.270260e-03	ci right 1.360501e-03	k: 3287	n:2500000
Cons ci ratio: 5.640332e-03	ci left: 1.614656e-01	ci right 1.623792e-01	k: 404805	n:2500000
KS ci ratio: 1.145264e-01	ci left: 4.415702e-04	ci right 4.955979e-04	k: 1170	n:2500000
ARHGEF18   2500000 perm   3025 sec   (826 perm/sec)   p_kst 4.680000e-04   p_cons 1.619220e-01   p_joint 1.314800e-03

Joint ci ratio: 6.818321e-02	ci left: 1.270290e-03	ci right 1.360348e-03	k: 3300	n:2510000
Cons ci ratio: 5.629277e-03	ci left: 1.614572e-01	ci right 1.623691e-01	k: 406401	n:2510000
KS ci ratio: 1.142341e-01	ci left: 4.421330e-04	ci right 4.960822e-04	k: 1176	n:2510000
ARHGEF18   2510000 perm   3047 sec   (824 perm/sec)   p_kst 4.685259e-04   p_cons 1.619127e-01   p_joint 1.314741e-03

Joint ci ratio: 6.801853e-02	ci left: 1.271491e-03	ci right 1.361408e-03	k: 3316	n:2520000
Cons ci ratio: 5.618204e-03	ci left: 1.614529e-01	ci right 1.623629e-01	k: 408007	n:2520000
KS ci ratio: 1.139440e-01	ci left: 4.426915e-04	ci right 4.965625e-04	k: 1182	n:2520000
ARHGEF18   2520000 perm   3072 sec   (820 perm/sec)   p_kst 4.690476e-04   p_cons 1.619075e-01   p_joint 1.315873e-03

Joint ci ratio: 6.787543e-02	ci left: 1.271905e-03	ci right 1.361654e-03	k: 3330	n:2530000
Cons ci ratio: 5.607271e-03	ci left: 1.614451e-01	ci right 1.623533e-01	k: 409604	n:2530000
KS ci ratio: 1.137999e-01	ci left: 4.420937e-04	ci right 4.958193e-04	k: 1185	n:2530000
ARHGEF18   2530000 perm   3096 sec   (817 perm/sec)   p_kst 4.683794e-04   p_cons 1.618988e-01   p_joint 1.316206e-03

Joint ci ratio: 6.771296e-02	ci left: 1.273090e-03	ci right 1.362699e-03	k: 3346	n:2540000
Cons ci ratio: 5.596376e-03	ci left: 1.614385e-01	ci right 1.623449e-01	k: 411204	n:2540000
KS ci ratio: 1.136085e-01	ci left: 4.418832e-04	ci right 4.954868e-04	k: 1189	n:2540000
ARHGEF18   2540000 perm   3119 sec   (814 perm/sec)   p_kst 4.681102e-04   p_cons 1.618913e-01   p_joint 1.317323e-03

Joint ci ratio: 6.764234e-02	ci left: 1.270796e-03	ci right 1.360147e-03	k: 3353	n:2550000
Cons ci ratio: 5.585246e-03	ci left: 1.614465e-01	ci right 1.623511e-01	k: 412841	n:2550000
KS ci ratio: 1.135132e-01	ci left: 4.409124e-04	ci right 4.943503e-04	k: 1191	n:2550000
ARHGEF18   2550000 perm   3142 sec   (812 perm/sec)   p_kst 4.670588e-04   p_cons 1.618984e-01   p_joint 1.314902e-03

Joint ci ratio: 6.744148e-02	ci left: 1.273512e-03	ci right 1.362778e-03	k: 3373	n:2560000
Cons ci ratio: 5.574639e-03	ci left: 1.614322e-01	ci right 1.623350e-01	k: 414421	n:2560000
KS ci ratio: 1.132285e-01	ci left: 4.414673e-04	ci right 4.948295e-04	k: 1197	n:2560000
ARHGEF18   2560000 perm   3164 sec   (809 perm/sec)   p_kst 4.675781e-04   p_cons 1.618832e-01   p_joint 1.317578e-03

Joint ci ratio: 6.729204e-02	ci left: 1.274295e-03	ci right 1.363410e-03	k: 3388	n:2570000
Cons ci ratio: 5.564205e-03	ci left: 1.614125e-01	ci right 1.623135e-01	k: 415987	n:2570000
KS ci ratio: 1.128055e-01	ci left: 4.431525e-04	ci right 4.965049e-04	k: 1206	n:2570000
ARHGEF18   2570000 perm   3186 sec   (807 perm/sec)   p_kst 4.692607e-04   p_cons 1.618626e-01   p_joint 1.318288e-03

Joint ci ratio: 6.711398e-02	ci left: 1.276216e-03	ci right 1.365220e-03	k: 3406	n:2580000
Cons ci ratio: 5.553353e-03	ci left: 1.614162e-01	ci right 1.623155e-01	k: 417613	n:2580000
KS ci ratio: 1.126191e-01	ci left: 4.429416e-04	ci right 4.961746e-04	k: 1210	n:2580000
ARHGEF18   2580000 perm   3211 sec   (803 perm/sec)   p_kst 4.689922e-04   p_cons 1.618655e-01   p_joint 1.320155e-03

Joint ci ratio: 6.698630e-02	ci left: 1.276223e-03	ci right 1.365052e-03	k: 3419	n:2590000
Cons ci ratio: 5.542422e-03	ci left: 1.614269e-01	ci right 1.623244e-01	k: 419257	n:2590000
KS ci ratio: 1.124336e-01	ci left: 4.427323e-04	ci right 4.958467e-04	k: 1214	n:2590000
ARHGEF18   2590000 perm   3233 sec   (801 perm/sec)   p_kst 4.687259e-04   p_cons 1.618753e-01   p_joint 1.320077e-03

Joint ci ratio: 6.726274e-02	ci left: 1.260726e-03	ci right 1.348852e-03	k: 3391	n:2600000
Cons ci ratio: 5.531712e-03	ci left: 1.614298e-01	ci right 1.623256e-01	k: 420881	n:2600000
KS ci ratio: 1.123412e-01	ci left: 4.417771e-04	ci right 4.947304e-04	k: 1216	n:2600000
ARHGEF18   2600000 perm   3258 sec   (798 perm/sec)   p_kst 4.676923e-04   p_cons 1.618773e-01   p_joint 1.304231e-03

Joint ci ratio: 6.717374e-02	ci left: 1.259286e-03	ci right 1.347191e-03	k: 3400	n:2610000
Cons ci ratio: 5.521079e-03	ci left: 1.614319e-01	ci right 1.623260e-01	k: 422503	n:2610000
KS ci ratio: 1.123413e-01	ci left: 4.400844e-04	ci right 4.928349e-04	k: 1216	n:2610000
ARHGEF18   2610000 perm   3281 sec   (796 perm/sec)   p_kst 4.659004e-04   p_cons 1.618785e-01   p_joint 1.302682e-03

Joint ci ratio: 6.724323e-02	ci left: 1.251852e-03	ci right 1.339332e-03	k: 3393	n:2620000
Cons ci ratio: 5.510864e-03	ci left: 1.614164e-01	ci right 1.623088e-01	k: 424079	n:2620000
KS ci ratio: 1.120195e-01	ci left: 4.410015e-04	ci right 4.937006e-04	k: 1223	n:2620000
ARHGEF18   2620000 perm   3303 sec   (793 perm/sec)   p_kst 4.667939e-04   p_cons 1.618622e-01   p_joint 1.295038e-03

Joint ci ratio: 6.712469e-02	ci left: 1.251579e-03	ci right 1.338879e-03	k: 3405	n:2630000
Cons ci ratio: 5.500606e-03	ci left: 1.614060e-01	ci right 1.622966e-01	k: 425668	n:2630000
KS ci ratio: 1.117460e-01	ci left: 4.415422e-04	ci right 4.941686e-04	k: 1229	n:2630000
ARHGEF18   2630000 perm   3326 sec   (791 perm/sec)   p_kst 4.673004e-04   p_cons 1.618510e-01   p_joint 1.294677e-03

Joint ci ratio: 6.697734e-02	ci left: 1.252424e-03	ci right 1.339584e-03	k: 3420	n:2640000
Cons ci ratio: 5.490152e-03	ci left: 1.614082e-01	ci right 1.622971e-01	k: 427290	n:2640000
KS ci ratio: 1.115195e-01	ci left: 4.417108e-04	ci right 4.942435e-04	k: 1234	n:2640000
ARHGEF18   2640000 perm   3349 sec   (788 perm/sec)   p_kst 4.674242e-04   p_cons 1.618523e-01   p_joint 1.295455e-03

Joint ci ratio: 6.692855e-02	ci left: 1.249553e-03	ci right 1.336448e-03	k: 3425	n:2650000
Cons ci ratio: 5.480115e-03	ci left: 1.613926e-01	ci right 1.622798e-01	k: 428865	n:2650000
KS ci ratio: 1.113394e-01	ci left: 4.415113e-04	ci right 4.939299e-04	k: 1238	n:2650000
ARHGEF18   2650000 perm   3374 sec   (785 perm/sec)   p_kst 4.671698e-04   p_cons 1.618358e-01   p_joint 1.292453e-03

Joint ci ratio: 6.677277e-02	ci left: 1.250770e-03	ci right 1.337539e-03	k: 3441	n:2660000
Cons ci ratio: 5.469337e-03	ci left: 1.614166e-01	ci right 1.623022e-01	k: 430545	n:2660000
KS ci ratio: 1.109371e-01	ci left: 4.431409e-04	ci right 4.955505e-04	k: 1247	n:2660000
ARHGEF18   2660000 perm   3398 sec   (783 perm/sec)   p_kst 4.687970e-04   p_cons 1.618590e-01   p_joint 1.293609e-03

Joint ci ratio: 6.707606e-02	ci left: 1.234669e-03	ci right 1.320725e-03	k: 3410	n:2670000
Cons ci ratio: 5.459263e-03	ci left: 1.614086e-01	ci right 1.622925e-01	k: 432140	n:2670000
KS ci ratio: 1.107155e-01	ci left: 4.433020e-04	ci right 4.956190e-04	k: 1252	n:2670000
ARHGEF18   2670000 perm   3425 sec   (780 perm/sec)   p_kst 4.689139e-04   p_cons 1.618502e-01   p_joint 1.277154e-03

Joint ci ratio: 6.769505e-02	ci left: 1.207317e-03	ci right 1.292274e-03	k: 3348	n:2680000
Cons ci ratio: 5.449184e-03	ci left: 1.614036e-01	ci right 1.622859e-01	k: 433743	n:2680000
KS ci ratio: 1.104075e-01	ci left: 4.441876e-04	ci right 4.964539e-04	k: 1259	n:2680000
ARHGEF18   2680000 perm   3451 sec   (776 perm/sec)   p_kst 4.697761e-04   p_cons 1.618444e-01   p_joint 1.249254e-03

Joint ci ratio: 6.757410e-02	ci left: 1.207215e-03	ci right 1.292006e-03	k: 3360	n:2690000
Cons ci ratio: 5.438826e-03	ci left: 1.614154e-01	ci right 1.622961e-01	k: 435391	n:2690000
KS ci ratio: 1.101891e-01	ci left: 4.443438e-04	ci right 4.965183e-04	k: 1264	n:2690000
ARHGEF18   2690000 perm   3475 sec   (774 perm/sec)   p_kst 4.698885e-04   p_cons 1.618554e-01   p_joint 1.249071e-03

Joint ci ratio: 6.746381e-02	ci left: 1.206749e-03	ci right 1.291364e-03	k: 3371	n:2700000
Cons ci ratio: 5.428416e-03	ci left: 1.614327e-01	ci right 1.623117e-01	k: 437054	n:2700000
KS ci ratio: 1.100153e-01	ci left: 4.441388e-04	ci right 4.962016e-04	k: 1268	n:2700000
ARHGEF18   2700000 perm   3500 sec   (771 perm/sec)   p_kst 4.696296e-04   p_cons 1.618719e-01   p_joint 1.248519e-03

Joint ci ratio: 6.736402e-02	ci left: 1.205924e-03	ci right 1.290351e-03	k: 3381	n:2710000
Cons ci ratio: 5.418816e-03	ci left: 1.614122e-01	ci right 1.622896e-01	k: 438615	n:2710000
KS ci ratio: 1.096701e-01	ci left: 4.453708e-04	ci right 4.974037e-04	k: 1276	n:2710000
ARHGEF18   2710000 perm   3523 sec   (769 perm/sec)   p_kst 4.708487e-04   p_cons 1.618506e-01   p_joint 1.247601e-03

Joint ci ratio: 6.759470e-02	ci left: 1.193177e-03	ci right 1.277009e-03	k: 3358	n:2720000
Cons ci ratio: 5.408725e-03	ci left: 1.614191e-01	ci right 1.622949e-01	k: 440250	n:2720000
KS ci ratio: 1.094987e-01	ci left: 4.451637e-04	ci right 4.970859e-04	k: 1280	n:2720000
ARHGEF18   2720000 perm   3547 sec   (767 perm/sec)   p_kst 4.705882e-04   p_cons 1.618566e-01   p_joint 1.234559e-03

Joint ci ratio: 6.751441e-02	ci left: 1.191687e-03	ci right 1.275311e-03	k: 3366	n:2730000
Cons ci ratio: 5.398610e-03	ci left: 1.614299e-01	ci right 1.623041e-01	k: 441896	n:2730000
KS ci ratio: 1.093282e-01	ci left: 4.449582e-04	ci right 4.967703e-04	k: 1284	n:2730000
ARHGEF18   2730000 perm   3571 sec   (764 perm/sec)   p_kst 4.703297e-04   p_cons 1.618667e-01   p_joint 1.232967e-03

Joint ci ratio: 6.742439e-02	ci left: 1.190567e-03	ci right 1.273997e-03	k: 3375	n:2740000
Cons ci ratio: 5.389001e-03	ci left: 1.614181e-01	ci right 1.622907e-01	k: 443480	n:2740000
KS ci ratio: 1.091161e-01	ci left: 4.451092e-04	ci right 4.968319e-04	k: 1289	n:2740000
ARHGEF18   2740000 perm   3595 sec   (762 perm/sec)   p_kst 4.704380e-04   p_cons 1.618540e-01   p_joint 1.231752e-03

Joint ci ratio: 6.729494e-02	ci left: 1.190885e-03	ci right 1.274171e-03	k: 3388	n:2750000
Cons ci ratio: 5.379284e-03	ci left: 1.614143e-01	ci right 1.622853e-01	k: 445086	n:2750000
KS ci ratio: 1.089895e-01	ci left: 4.445518e-04	ci right 4.961459e-04	k: 1292	n:2750000
ARHGEF18   2750000 perm   3621 sec   (760 perm/sec)   p_kst 4.698182e-04   p_cons 1.618495e-01   p_joint 1.232000e-03

Joint ci ratio: 6.721571e-02	ci left: 1.189420e-03	ci right 1.272502e-03	k: 3396	n:2760000
Cons ci ratio: 5.369441e-03	ci left: 1.614196e-01	ci right 1.622890e-01	k: 446717	n:2760000
KS ci ratio: 1.089053e-01	ci left: 4.436460e-04	ci right 4.950927e-04	k: 1294	n:2760000
ARHGEF18   2760000 perm   3644 sec   (757 perm/sec)   p_kst 4.688406e-04   p_cons 1.618540e-01   p_joint 1.230435e-03

Joint ci ratio: 6.711702e-02	ci left: 1.188676e-03	ci right 1.271578e-03	k: 3406	n:2770000
Cons ci ratio: 5.359658e-03	ci left: 1.614246e-01	ci right 1.622924e-01	k: 448347	n:2770000
KS ci ratio: 1.087795e-01	ci left: 4.430979e-04	ci right 4.944179e-04	k: 1297	n:2770000
ARHGEF18   2770000 perm   3670 sec   (755 perm/sec)   p_kst 4.682310e-04   p_cons 1.618581e-01   p_joint 1.229603e-03

Joint ci ratio: 6.704824e-02	ci left: 1.186876e-03	ci right 1.269565e-03	k: 3413	n:2780000
Cons ci ratio: 5.349780e-03	ci left: 1.614370e-01	ci right 1.623033e-01	k: 449998	n:2780000
KS ci ratio: 1.086122e-01	ci left: 4.429037e-04	ci right 4.941173e-04	k: 1301	n:2780000
ARHGEF18   2780000 perm   3693 sec   (753 perm/sec)   p_kst 4.679856e-04   p_cons 1.618698e-01   p_joint 1.227698e-03

Joint ci ratio: 6.691117e-02	ci left: 1.187555e-03	ci right 1.270116e-03	k: 3427	n:2790000
Cons ci ratio: 5.340302e-03	ci left: 1.614318e-01	ci right 1.622965e-01	k: 451600	n:2790000
KS ci ratio: 1.084458e-01	ci left: 4.427110e-04	ci right 4.938189e-04	k: 1305	n:2790000
ARHGEF18   2790000 perm   3717 sec   (751 perm/sec)   p_kst 4.677419e-04   p_cons 1.618638e-01   p_joint 1.228315e-03

Joint ci ratio: 6.674582e-02	ci left: 1.189284e-03	ci right 1.271753e-03	k: 3444	n:2800000
Cons ci ratio: 5.330796e-03	ci left: 1.614305e-01	ci right 1.622937e-01	k: 453213	n:2800000
KS ci ratio: 1.081563e-01	ci left: 4.435622e-04	ci right 4.946230e-04	k: 1312	n:2800000
ARHGEF18   2800000 perm   3741 sec   (749 perm/sec)   p_kst 4.685714e-04   p_cons 1.618618e-01   p_joint 1.230000e-03

Joint ci ratio: 6.663952e-02	ci left: 1.188901e-03	ci right 1.271207e-03	k: 3455	n:2810000
Cons ci ratio: 5.321370e-03	ci left: 1.614279e-01	ci right 1.622895e-01	k: 454822	n:2810000
KS ci ratio: 1.079509e-01	ci left: 4.437150e-04	ci right 4.946902e-04	k: 1317	n:2810000
ARHGEF18   2810000 perm   3765 sec   (746 perm/sec)   p_kst 4.686833e-04   p_cons 1.618584e-01   p_joint 1.229537e-03

Joint ci ratio: 6.649534e-02	ci left: 1.189916e-03	ci right 1.272107e-03	k: 3470	n:2820000
Cons ci ratio: 5.311639e-03	ci left: 1.614433e-01	ci right 1.623035e-01	k: 456482	n:2820000
KS ci ratio: 1.078692e-01	ci left: 4.428316e-04	ci right 4.936643e-04	k: 1319	n:2820000
ARHGEF18   2820000 perm   3788 sec   (744 perm/sec)   p_kst 4.677305e-04   p_cons 1.618730e-01   p_joint 1.230496e-03

Joint ci ratio: 6.654349e-02	ci left: 1.183974e-03	ci right 1.265816e-03	k: 3465	n:2830000
Cons ci ratio: 5.301968e-03	ci left: 1.614583e-01	ci right 1.623170e-01	k: 458141	n:2830000
KS ci ratio: 1.076248e-01	ci left: 4.433298e-04	ci right 4.940972e-04	k: 1325	n:2830000
ARHGEF18   2830000 perm   3812 sec   (742 perm/sec)   p_kst 4.681979e-04   p_cons 1.618873e-01   p_joint 1.224382e-03

Joint ci ratio: 6.642860e-02	ci left: 1.183960e-03	ci right 1.265654e-03	k: 3477	n:2840000
Cons ci ratio: 5.292885e-03	ci left: 1.614457e-01	ci right 1.623028e-01	k: 459722	n:2840000
KS ci ratio: 1.075033e-01	ci left: 4.427967e-04	ci right 4.934421e-04	k: 1328	n:2840000
ARHGEF18   2840000 perm   3836 sec   (740 perm/sec)   p_kst 4.676056e-04   p_cons 1.618739e-01   p_joint 1.224296e-03

Joint ci ratio: 6.635238e-02	ci left: 1.182566e-03	ci right 1.264067e-03	k: 3485	n:2850000
Cons ci ratio: 5.283740e-03	ci left: 1.614389e-01	ci right 1.622945e-01	k: 461319	n:2850000
KS ci ratio: 1.073419e-01	ci left: 4.426089e-04	ci right 4.931520e-04	k: 1332	n:2850000
ARHGEF18   2850000 perm   3859 sec   (738 perm/sec)   p_kst 4.673684e-04   p_cons 1.618663e-01   p_joint 1.222807e-03

Joint ci ratio: 6.643845e-02	ci left: 1.175336e-03	ci right 1.256448e-03	k: 3476	n:2860000
Cons ci ratio: 5.274479e-03	ci left: 1.614404e-01	ci right 1.622945e-01	k: 462940	n:2860000
KS ci ratio: 1.071011e-01	ci left: 4.431029e-04	ci right 4.935818e-04	k: 1338	n:2860000
ARHGEF18   2860000 perm   3883 sec   (736 perm/sec)   p_kst 4.678322e-04   p_cons 1.618671e-01   p_joint 1.215385e-03

Joint ci ratio: 6.639081e-02	ci left: 1.172954e-03	ci right 1.253841e-03	k: 3481	n:2870000
Cons ci ratio: 5.265056e-03	ci left: 1.614528e-01	ci right 1.623054e-01	k: 464592	n:2870000
KS ci ratio: 1.069814e-01	ci left: 4.425763e-04	ci right 4.929353e-04	k: 1341	n:2870000
ARHGEF18   2870000 perm   3908 sec   (734 perm/sec)   p_kst 4.672474e-04   p_cons 1.618787e-01   p_joint 1.212892e-03

Joint ci ratio: 6.622928e-02	ci left: 1.174686e-03	ci right 1.255488e-03	k: 3498	n:2880000
Cons ci ratio: 5.255731e-03	ci left: 1.614626e-01	ci right 1.623138e-01	k: 466237	n:2880000
KS ci ratio: 1.066244e-01	ci left: 4.440811e-04	ci right 4.944321e-04	k: 1350	n:2880000
ARHGEF18   2880000 perm   3932 sec   (732 perm/sec)   p_kst 4.687500e-04   p_cons 1.618878e-01   p_joint 1.214583e-03

Joint ci ratio: 6.612543e-02	ci left: 1.174365e-03	ci right 1.255013e-03	k: 3509	n:2890000
Cons ci ratio: 5.246556e-03	ci left: 1.614672e-01	ci right 1.623169e-01	k: 467867	n:2890000
KS ci ratio: 1.064276e-01	ci left: 4.442285e-04	ci right 4.944975e-04	k: 1355	n:2890000
ARHGEF18   2890000 perm   3956 sec   (731 perm/sec)   p_kst 4.688581e-04   p_cons 1.618917e-01   p_joint 1.214187e-03

Joint ci ratio: 6.605965e-02	ci left: 1.172689e-03	ci right 1.253139e-03	k: 3516	n:2900000
Cons ci ratio: 5.237136e-03	ci left: 1.614869e-01	ci right 1.623352e-01	k: 469541	n:2900000
KS ci ratio: 1.063884e-01	ci left: 4.430323e-04	ci right 4.931463e-04	k: 1356	n:2900000
ARHGEF18   2900000 perm   3981 sec   (728 perm/sec)   p_kst 4.675862e-04   p_cons 1.619107e-01   p_joint 1.212414e-03

Joint ci ratio: 6.595660e-02	ci left: 1.172377e-03	ci right 1.252676e-03	k: 3527	n:2910000
Cons ci ratio: 5.228263e-03	ci left: 1.614807e-01	ci right 1.623275e-01	k: 471140	n:2910000
KS ci ratio: 1.061540e-01	ci left: 4.435170e-04	ci right 4.935683e-04	k: 1362	n:2910000
ARHGEF18   2910000 perm   4006 sec   (726 perm/sec)   p_kst 4.680412e-04   p_cons 1.619038e-01   p_joint 1.212027e-03

Joint ci ratio: 6.590066e-02	ci left: 1.170383e-03	ci right 1.250474e-03	k: 3533	n:2920000
Cons ci ratio: 5.219132e-03	ci left: 1.614903e-01	ci right 1.623357e-01	k: 472785	n:2920000
KS ci ratio: 1.060762e-01	ci left: 4.426648e-04	ci right 4.925811e-04	k: 1364	n:2920000
ARHGEF18   2920000 perm   4030 sec   (725 perm/sec)   p_kst 4.671233e-04   p_cons 1.619127e-01   p_joint 1.209932e-03

Joint ci ratio: 6.684484e-02	ci left: 1.133160e-03	ci right 1.211858e-03	k: 3434	n:2930000
Cons ci ratio: 5.210422e-03	ci left: 1.614804e-01	ci right 1.623243e-01	k: 474373	n:2930000
KS ci ratio: 1.059212e-01	ci left: 4.424830e-04	ci right 4.923013e-04	k: 1368	n:2930000
ARHGEF18   2930000 perm   4054 sec   (723 perm/sec)   p_kst 4.668942e-04   p_cons 1.619020e-01   p_joint 1.172014e-03

Joint ci ratio: 6.668966e-02	ci left: 1.134657e-03	ci right 1.213269e-03	k: 3450	n:2940000
Cons ci ratio: 5.201279e-03	ci left: 1.614954e-01	ci right 1.623379e-01	k: 476034	n:2940000
KS ci ratio: 1.057283e-01	ci left: 4.426336e-04	ci right 4.923725e-04	k: 1373	n:2940000
ARHGEF18   2940000 perm   4080 sec   (721 perm/sec)   p_kst 4.670068e-04   p_cons 1.619163e-01   p_joint 1.173469e-03

Joint ci ratio: 6.655477e-02	ci left: 1.135478e-03	ci right 1.213981e-03	k: 3464	n:2950000
Cons ci ratio: 5.192820e-03	ci left: 1.614771e-01	ci right 1.623181e-01	k: 477597	n:2950000
KS ci ratio: 1.055747e-01	ci left: 4.424533e-04	ci right 4.920952e-04	k: 1377	n:2950000
ARHGEF18   2950000 perm   4105 sec   (719 perm/sec)   p_kst 4.667797e-04   p_cons 1.618973e-01   p_joint 1.174237e-03

Joint ci ratio: 6.642069e-02	ci left: 1.136293e-03	ci right 1.214688e-03	k: 3478	n:2960000
Cons ci ratio: 5.183790e-03	ci left: 1.614910e-01	ci right 1.623306e-01	k: 479255	n:2960000
KS ci ratio: 1.054600e-01	ci left: 4.419453e-04	ci right 4.914729e-04	k: 1380	n:2960000
ARHGEF18   2960000 perm   4130 sec   (717 perm/sec)   p_kst 4.662162e-04   p_cons 1.619105e-01   p_joint 1.175000e-03

Joint ci ratio: 6.665139e-02	ci left: 1.124520e-03	ci right 1.202383e-03	k: 3454	n:2970000
Cons ci ratio: 5.175037e-03	ci left: 1.614927e-01	ci right 1.623309e-01	k: 480877	n:2970000
KS ci ratio: 1.053838e-01	ci left: 4.411129e-04	ci right 4.905093e-04	k: 1382	n:2970000
ARHGEF18   2970000 perm   4154 sec   (715 perm/sec)   p_kst 4.653199e-04   p_cons 1.619114e-01   p_joint 1.162963e-03

Joint ci ratio: 6.803572e-02	ci left: 1.074887e-03	ci right 1.150920e-03	k: 3315	n:2980000
Cons ci ratio: 5.166322e-03	ci left: 1.614947e-01	ci right 1.623315e-01	k: 482500	n:2980000
KS ci ratio: 1.051938e-01	ci left: 4.412663e-04	ci right 4.905853e-04	k: 1387	n:2980000
ARHGEF18   2980000 perm   4182 sec   (713 perm/sec)   p_kst 4.654362e-04   p_cons 1.619128e-01   p_joint 1.112416e-03

Joint ci ratio: 6.789252e-02	ci left: 1.075895e-03	ci right 1.151833e-03	k: 3329	n:2990000
Cons ci ratio: 5.157701e-03	ci left: 1.614940e-01	ci right 1.623294e-01	k: 484115	n:2990000
KS ci ratio: 1.049671e-01	ci left: 4.417444e-04	ci right 4.910040e-04	k: 1393	n:2990000
ARHGEF18   2990000 perm   4207 sec   (711 perm/sec)   p_kst 4.658863e-04   p_cons 1.619114e-01   p_joint 1.113378e-03

Joint ci ratio: 6.774008e-02	ci left: 1.077224e-03	ci right 1.153078e-03	k: 3344	n:3000000
Cons ci ratio: 5.149497e-03	ci left: 1.614737e-01	ci right 1.623076e-01	k: 485671	n:3000000
KS ci ratio: 1.047419e-01	ci left: 4.422195e-04	ci right 4.914197e-04	k: 1399	n:3000000
ARHGEF18   3000000 perm   4232 sec   (709 perm/sec)   p_kst 4.663333e-04   p_cons 1.618903e-01   p_joint 1.114667e-03

Joint ci ratio: 6.755847e-02	ci left: 1.079524e-03	ci right 1.155328e-03	k: 3362	n:3010000
Cons ci ratio: 5.140873e-03	ci left: 1.614777e-01	ci right 1.623103e-01	k: 487300	n:3010000
KS ci ratio: 1.045182e-01	ci left: 4.426915e-04	ci right 4.918326e-04	k: 1405	n:3010000
ARHGEF18   3010000 perm   4257 sec   (707 perm/sec)   p_kst 4.667774e-04   p_cons 1.618937e-01   p_joint 1.116944e-03

Joint ci ratio: 6.794398e-02	ci left: 1.063579e-03	ci right 1.138707e-03	k: 3324	n:3020000
Cons ci ratio: 5.132523e-03	ci left: 1.614695e-01	ci right 1.623007e-01	k: 488892	n:3020000
KS ci ratio: 1.044811e-01	ci left: 4.415481e-04	ci right 4.905438e-04	k: 1406	n:3020000
ARHGEF18   3020000 perm   4282 sec   (705 perm/sec)   p_kst 4.655629e-04   p_cons 1.618848e-01   p_joint 1.100662e-03

Joint ci ratio: 6.783187e-02	ci left: 1.063638e-03	ci right 1.138641e-03	k: 3335	n:3030000
Cons ci ratio: 5.123578e-03	ci left: 1.614950e-01	ci right 1.623248e-01	k: 490586	n:3030000
KS ci ratio: 1.044070e-01	ci left: 4.407337e-04	ci right 4.896022e-04	k: 1408	n:3030000
ARHGEF18   3030000 perm   4308 sec   (703 perm/sec)   p_kst 4.646865e-04   p_cons 1.619096e-01   p_joint 1.100660e-03

Joint ci ratio: 6.775071e-02	ci left: 1.062726e-03	ci right 1.137572e-03	k: 3343	n:3040000
Cons ci ratio: 5.115219e-03	ci left: 1.614917e-01	ci right 1.623202e-01	k: 492193	n:3040000
KS ci ratio: 1.042222e-01	ci left: 4.408857e-04	ci right 4.896792e-04	k: 1413	n:3040000
ARHGEF18   3040000 perm   4333 sec   (702 perm/sec)   p_kst 4.648026e-04   p_cons 1.619056e-01   p_joint 1.099671e-03

Joint ci ratio: 6.759922e-02	ci left: 1.064076e-03	ci right 1.138843e-03	k: 3358	n:3050000
Cons ci ratio: 5.106667e-03	ci left: 1.615008e-01	ci right 1.623280e-01	k: 493838	n:3050000
KS ci ratio: 1.040384e-01	ci left: 4.410369e-04	ci right 4.897558e-04	k: 1418	n:3050000
ARHGEF18   3050000 perm   4359 sec   (700 perm/sec)   p_kst 4.649180e-04   p_cons 1.619141e-01   p_joint 1.100984e-03

Joint ci ratio: 6.751890e-02	ci left: 1.063169e-03	ci right 1.137780e-03	k: 3366	n:3060000
Cons ci ratio: 5.098126e-03	ci left: 1.615116e-01	ci right 1.623374e-01	k: 495488	n:3060000
KS ci ratio: 1.039286e-01	ci left: 4.405505e-04	ci right 4.891611e-04	k: 1421	n:3060000
ARHGEF18   3060000 perm   4384 sec   (698 perm/sec)   p_kst 4.643791e-04   p_cons 1.619242e-01   p_joint 1.100000e-03

Joint ci ratio: 6.739889e-02	ci left: 1.063549e-03	ci right 1.138049e-03	k: 3378	n:3070000
Cons ci ratio: 5.089738e-03	ci left: 1.615164e-01	ci right 1.623409e-01	k: 497120	n:3070000
KS ci ratio: 1.037464e-01	ci left: 4.407018e-04	ci right 4.892387e-04	k: 1426	n:3070000
ARHGEF18   3070000 perm   4409 sec   (696 perm/sec)   p_kst 4.644951e-04   p_cons 1.619283e-01   p_joint 1.100326e-03

Joint ci ratio: 6.727952e-02	ci left: 1.063926e-03	ci right 1.138315e-03	k: 3390	n:3080000
Cons ci ratio: 5.081495e-03	ci left: 1.615157e-01	ci right 1.623388e-01	k: 498735	n:3080000
KS ci ratio: 1.036013e-01	ci left: 4.405360e-04	ci right 4.889827e-04	k: 1430	n:3080000
ARHGEF18   3080000 perm   4434 sec   (695 perm/sec)   p_kst 4.642857e-04   p_cons 1.619269e-01   p_joint 1.100649e-03

Joint ci ratio: 6.740912e-02	ci left: 1.056347e-03	ci right 1.130354e-03	k: 3377	n:3090000
Cons ci ratio: 5.073292e-03	ci left: 1.615150e-01	ci right 1.623368e-01	k: 500350	n:3090000
KS ci ratio: 1.034929e-01	ci left: 4.400560e-04	ci right 4.883962e-04	k: 1433	n:3090000
ARHGEF18   3090000 perm   4459 sec   (693 perm/sec)   p_kst 4.637540e-04   p_cons 1.619256e-01   p_joint 1.092880e-03

Joint ci ratio: 6.731952e-02	ci left: 1.055794e-03	ci right 1.129660e-03	k: 3386	n:3100000
Cons ci ratio: 5.064960e-03	ci left: 1.615233e-01	ci right 1.623438e-01	k: 501993	n:3100000
KS ci ratio: 1.033130e-01	ci left: 4.402077e-04	ci right 4.884753e-04	k: 1438	n:3100000
ARHGEF18   3100000 perm   4485 sec   (691 perm/sec)   p_kst 4.638710e-04   p_cons 1.619332e-01   p_joint 1.092258e-03

Joint ci ratio: 6.742934e-02	ci left: 1.048921e-03	ci right 1.122431e-03	k: 3375	n:3110000
Cons ci ratio: 5.056543e-03	ci left: 1.615383e-01	ci right 1.623575e-01	k: 503657	n:3110000
KS ci ratio: 1.030982e-01	ci left: 4.406717e-04	ci right 4.888837e-04	k: 1444	n:3110000
ARHGEF18   3110000 perm   4511 sec   (689 perm/sec)   p_kst 4.643087e-04   p_cons 1.619476e-01   p_joint 1.085209e-03

Joint ci ratio: 6.771114e-02	ci left: 1.036736e-03	ci right 1.109707e-03	k: 3347	n:3120000
Cons ci ratio: 5.048298e-03	ci left: 1.615462e-01	ci right 1.623641e-01	k: 505299	n:3120000
KS ci ratio: 1.029203e-01	ci left: 4.408206e-04	ci right 4.889606e-04	k: 1449	n:3120000
ARHGEF18   3120000 perm   4537 sec   (688 perm/sec)   p_kst 4.644231e-04   p_cons 1.619548e-01   p_joint 1.072756e-03

Joint ci ratio: 6.765060e-02	ci left: 1.035309e-03	ci right 1.108112e-03	k: 3353	n:3130000
Cons ci ratio: 5.040432e-03	ci left: 1.615358e-01	ci right 1.623524e-01	k: 506884	n:3130000
KS ci ratio: 1.027786e-01	ci left: 4.406573e-04	ci right 4.887092e-04	k: 1453	n:3130000
ARHGEF18   3130000 perm   4563 sec   (686 perm/sec)   p_kst 4.642173e-04   p_cons 1.619438e-01   p_joint 1.071246e-03

Joint ci ratio: 6.756004e-02	ci left: 1.034829e-03	ci right 1.107497e-03	k: 3362	n:3140000
Cons ci ratio: 5.032509e-03	ci left: 1.615306e-01	ci right 1.623458e-01	k: 508485	n:3140000
KS ci ratio: 1.026376e-01	ci left: 4.404951e-04	ci right 4.884594e-04	k: 1457	n:3140000
ARHGEF18   3140000 perm   4589 sec   (684 perm/sec)   p_kst 4.640127e-04   p_cons 1.619379e-01   p_joint 1.070701e-03

Joint ci ratio: 6.774188e-02	ci left: 1.025926e-03	ci right 1.098171e-03	k: 3344	n:3150000
Cons ci ratio: 5.024470e-03	ci left: 1.615336e-01	ci right 1.623476e-01	k: 510112	n:3150000
KS ci ratio: 1.024620e-01	ci left: 4.406433e-04	ci right 4.885368e-04	k: 1462	n:3150000
ARHGEF18   3150000 perm   4615 sec   (683 perm/sec)   p_kst 4.641270e-04   p_cons 1.619403e-01   p_joint 1.061587e-03

Joint ci ratio: 6.766104e-02	ci left: 1.025168e-03	ci right 1.097270e-03	k: 3352	n:3160000
Cons ci ratio: 5.016445e-03	ci left: 1.615380e-01	ci right 1.623506e-01	k: 511743	n:3160000
KS ci ratio: 1.024271e-01	ci left: 4.395572e-04	ci right 4.873153e-04	k: 1463	n:3160000
ARHGEF18   3160000 perm   4642 sec   (681 perm/sec)   p_kst 4.629747e-04   p_cons 1.619440e-01   p_joint 1.060759e-03

Joint ci ratio: 6.751016e-02	ci left: 1.026586e-03	ci right 1.098620e-03	k: 3367	n:3170000
Cons ci ratio: 5.008646e-03	ci left: 1.615322e-01	ci right 1.623435e-01	k: 513342	n:3170000
KS ci ratio: 1.021483e-01	ci left: 4.406297e-04	ci right 4.883663e-04	k: 1471	n:3170000
ARHGEF18   3170000 perm   4670 sec   (679 perm/sec)   p_kst 4.640379e-04   p_cons 1.619375e-01   p_joint 1.062145e-03

Joint ci ratio: 6.854696e-02	ci left: 9.921368e-04	ci right 1.062865e-03	k: 3266	n:3180000
Cons ci ratio: 5.001010e-03	ci left: 1.615195e-01	ci right 1.623296e-01	k: 514919	n:3180000
KS ci ratio: 1.019408e-01	ci left: 4.410827e-04	ci right 4.887654e-04	k: 1477	n:3180000
ARHGEF18   3180000 perm   4697 sec   (677 perm/sec)   p_kst 4.644654e-04   p_cons 1.619242e-01   p_joint 1.027044e-03

Joint ci ratio: 6.843185e-02	ci left: 9.924158e-04	ci right 1.063040e-03	k: 3277	n:3190000
Cons ci ratio: 4.992619e-03	ci left: 1.615498e-01	ci right 1.623587e-01	k: 516633	n:3190000
KS ci ratio: 1.018719e-01	ci left: 4.403109e-04	ci right 4.878762e-04	k: 1479	n:3190000
ARHGEF18   3190000 perm   4723 sec   (675 perm/sec)   p_kst 4.636364e-04   p_cons 1.619539e-01   p_joint 1.027273e-03

Joint ci ratio: 6.841107e-02	ci left: 9.899288e-04	ci right 1.060354e-03	k: 3279	n:3200000
Cons ci ratio: 4.984580e-03	ci left: 1.615631e-01	ci right 1.623707e-01	k: 518293	n:3200000
KS ci ratio: 1.017345e-01	ci left: 4.401531e-04	ci right 4.876334e-04	k: 1483	n:3200000
ARHGEF18   3200000 perm   4750 sec   (674 perm/sec)   p_kst 4.634375e-04   p_cons 1.619666e-01   p_joint 1.024687e-03

Joint ci ratio: 6.837988e-02	ci left: 9.877635e-04	ci right 1.058001e-03	k: 3282	n:3210000
Cons ci ratio: 4.976996e-03	ci left: 1.615535e-01	ci right 1.623599e-01	k: 519880	n:3210000
KS ci ratio: 1.016319e-01	ci left: 4.396928e-04	ci right 4.870726e-04	k: 1486	n:3210000
ARHGEF18   3210000 perm   4777 sec   (672 perm/sec)   p_kst 4.629283e-04   p_cons 1.619564e-01   p_joint 1.022430e-03

Joint ci ratio: 6.825524e-02	ci left: 9.883589e-04	ci right 1.058506e-03	k: 3294	n:3220000
Cons ci ratio: 4.969686e-03	ci left: 1.615310e-01	ci right 1.623361e-01	k: 521425	n:3220000
KS ci ratio: 1.014274e-01	ci left: 4.401433e-04	ci right 4.874706e-04	k: 1492	n:3220000
ARHGEF18   3220000 perm   4803 sec   (670 perm/sec)   p_kst 4.633540e-04   p_cons 1.619332e-01   p_joint 1.022981e-03

Joint ci ratio: 6.815190e-02	ci left: 9.883422e-04	ci right 1.058378e-03	k: 3304	n:3230000
Cons ci ratio: 4.962305e-03	ci left: 1.615142e-01	ci right 1.623180e-01	k: 522988	n:3230000
KS ci ratio: 1.014275e-01	ci left: 4.387806e-04	ci right 4.859615e-04	k: 1492	n:3230000
ARHGEF18   3230000 perm   4830 sec   (669 perm/sec)   p_kst 4.619195e-04   p_cons 1.619158e-01   p_joint 1.022910e-03

Joint ci ratio: 6.836979e-02	ci left: 9.789207e-04	ci right 1.048519e-03	k: 3283	n:3240000
Cons ci ratio: 4.954637e-03	ci left: 1.615151e-01	ci right 1.623176e-01	k: 524608	n:3240000
KS ci ratio: 1.012919e-01	ci left: 4.386296e-04	ci right 4.857274e-04	k: 1496	n:3240000
ARHGEF18   3240000 perm   4858 sec   (667 perm/sec)   p_kst 4.617284e-04   p_cons 1.619160e-01   p_joint 1.013272e-03

Joint ci ratio: 6.822448e-02	ci left: 9.801428e-04	ci right 1.049674e-03	k: 3297	n:3250000
Cons ci ratio: 4.946639e-03	ci left: 1.615359e-01	ci right 1.623373e-01	k: 526293	n:3250000
KS ci ratio: 1.011906e-01	ci left: 4.381797e-04	ci right 4.851793e-04	k: 1499	n:3250000
ARHGEF18   3250000 perm   4886 sec   (665 perm/sec)   p_kst 4.612308e-04   p_cons 1.619363e-01   p_joint 1.014462e-03

Joint ci ratio: 6.810067e-02	ci left: 9.807545e-04	ci right 1.050198e-03	k: 3309	n:3260000
Cons ci ratio: 4.939439e-03	ci left: 1.615150e-01	ci right 1.623151e-01	k: 527842	n:3260000
KS ci ratio: 1.009888e-01	ci left: 4.386295e-04	ci right 4.855781e-04	k: 1505	n:3260000
ARHGEF18   3260000 perm   4912 sec   (664 perm/sec)   p_kst 4.616564e-04   p_cons 1.619147e-01   p_joint 1.015031e-03

Joint ci ratio: 6.812138e-02	ci left: 9.771540e-04	ci right 1.046364e-03	k: 3307	n:3270000
Cons ci ratio: 4.931471e-03	ci left: 1.615382e-01	ci right 1.623370e-01	k: 529535	n:3270000
KS ci ratio: 1.008884e-01	ci left: 4.381824e-04	ci right 4.850337e-04	k: 1508	n:3270000
ARHGEF18   3270000 perm   4938 sec   (662 perm/sec)   p_kst 4.611621e-04   p_cons 1.619373e-01   p_joint 1.011315e-03

Joint ci ratio: 6.845372e-02	ci left: 9.645851e-04	ci right 1.033252e-03	k: 3275	n:3280000
Cons ci ratio: 4.923728e-03	ci left: 1.615508e-01	ci right 1.623485e-01	k: 531194	n:3280000
KS ci ratio: 1.008885e-01	ci left: 4.368465e-04	ci right 4.835550e-04	k: 1508	n:3280000
ARHGEF18   3280000 perm   4965 sec   (661 perm/sec)   p_kst 4.597561e-04   p_cons 1.619494e-01   p_joint 9.984756e-04

Joint ci ratio: 6.872737e-02	ci left: 9.538859e-04	ci right 1.022073e-03	k: 3249	n:3290000
Cons ci ratio: 4.916468e-03	ci left: 1.615389e-01	ci right 1.623353e-01	k: 532772	n:3290000
KS ci ratio: 1.006552e-01	ci left: 4.375927e-04	ci right 4.842664e-04	k: 1515	n:3290000
ARHGEF18   3290000 perm   4992 sec   (659 perm/sec)   p_kst 4.604863e-04   p_cons 1.619368e-01   p_joint 9.875380e-04

Joint ci ratio: 6.863241e-02	ci left: 9.536758e-04	ci right 1.021750e-03	k: 3258	n:3300000
Cons ci ratio: 4.909043e-03	ci left: 1.615378e-01	ci right 1.623331e-01	k: 534386	n:3300000
KS ci ratio: 1.005227e-01	ci left: 4.374483e-04	ci right 4.840416e-04	k: 1519	n:3300000
ARHGEF18   3300000 perm   5019 sec   (658 perm/sec)   p_kst 4.603030e-04   p_cons 1.619352e-01   p_joint 9.872727e-04

Joint ci ratio: 6.861144e-02	ci left: 9.513884e-04	ci right 1.019278e-03	k: 3260	n:3310000
Cons ci ratio: 4.901318e-03	ci left: 1.615552e-01	ci right 1.623493e-01	k: 536061	n:3310000
KS ci ratio: 1.002264e-01	ci left: 4.387775e-04	ci right 4.853665e-04	k: 1528	n:3310000
ARHGEF18   3310000 perm   5046 sec   (656 perm/sec)   p_kst 4.616314e-04   p_cons 1.619520e-01   p_joint 9.848943e-04

Joint ci ratio: 6.848553e-02	ci left: 9.520753e-04	ci right 1.019884e-03	k: 3272	n:3320000
Cons ci ratio: 4.894015e-03	ci left: 1.615512e-01	ci right 1.623440e-01	k: 537665	n:3320000
KS ci ratio: 1.001282e-01	ci left: 4.383369e-04	ci right 4.848308e-04	k: 1531	n:3320000
ARHGEF18   3320000 perm   5073 sec   (655 perm/sec)   p_kst 4.611446e-04   p_cons 1.619473e-01   p_joint 9.855422e-04

Joint ci ratio: 6.834989e-02	ci left: 9.530533e-04	ci right 1.020792e-03	k: 3285	n:3330000
Cons ci ratio: 4.887070e-03	ci left: 1.615291e-01	ci right 1.623207e-01	k: 539209	n:3330000
KS ci ratio: 9.999775e-02	ci left: 4.381917e-04	ci right 4.846061e-04	k: 1535	n:3330000
ARHGEF18   3330000 perm   5100 sec   (653 perm/sec)   p_kst 4.609610e-04   p_cons 1.619246e-01   p_joint 9.864865e-04

Outputting figure to mutsig2_images.part000000000010/ARHGEF18.5_3598_3330000_0.00046096_0.16192_0.00098649.png
                gene_name: ARHGEF18
               theta_stop: 0.100 
                    nperm: 3330000 
                     p_ks: 0.00046 
        ci_ks_bounds_left: 0.00044 
       ci_ks_bounds_right: 0.00048 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.00099 
     ci_joint_bounds_left: 0.00095 
    ci_joint_bounds_right: 0.0010 

Current progress: 57 percent done.
ARHGEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.018502e-02	ci left: 1.516867e-01	ci right 1.661126e-01	k: 1588	n:10000
Cons ci ratio: 1.703240e-01	ci left: 4.600180e-02	ci right 5.466254e-02	k: 502	n:10000
KS ci ratio: 4.853484e-02	ci left: 3.851018e-01	ci right 4.043596e-01	k: 3947	n:10000
ARHGEF2   10000 perm   2 sec   (5278 perm/sec)   p_kst 3.947000e-01   p_cons 5.020000e-02   p_joint 1.588000e-01

Joint ci ratio: 9.097100e-02	ci left: 8.107257e-02	ci right 8.884859e-02	k: 1698	n:20000
Cons ci ratio: 1.186500e-01	ci left: 4.867167e-02	ci right 5.485947e-02	k: 1034	n:20000
KS ci ratio: 3.535352e-02	ci left: 3.739135e-01	ci right 3.874212e-01	k: 7613	n:20000
ARHGEF2   20000 perm   4 sec   (4765 perm/sec)   p_kst 3.806500e-01   p_cons 5.170000e-02   p_joint 8.490000e-02

Joint ci ratio: 7.831975e-02	ci left: 7.404042e-02	ci right 8.010845e-02	k: 2311	n:30000
Cons ci ratio: 9.739180e-02	ci left: 4.873281e-02	ci right 5.375454e-02	k: 1536	n:30000
KS ci ratio: 2.904225e-02	ci left: 3.723090e-01	ci right 3.833146e-01	k: 11334	n:30000
ARHGEF2   30000 perm   7 sec   (4416 perm/sec)   p_kst 3.778000e-01   p_cons 5.120000e-02   p_joint 7.703333e-02

Outputting figure to mutsig2_images.part000000000010/ARHGEF2.5_3049_30000_0.3778_0.0512_0.077033.png
                gene_name: ARHGEF2
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.080 

Current progress: 58 percent done.
ARHGEF37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.765680e-02	ci left: 5.101534e-01	ci right 5.298350e-01	k: 5200	n:10000
Cons ci ratio: 3.806611e-02	ci left: 5.047513e-01	ci right 5.244402e-01	k: 5146	n:10000
KS ci ratio: 5.272375e-02	ci left: 3.465091e-01	ci right 3.653749e-01	k: 3559	n:10000
ARHGEF37   10000 perm   2 sec   (5518 perm/sec)   p_kst 3.559000e-01   p_cons 5.146000e-01   p_joint 5.200000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF37.5_2076_10000_0.3559_0.5146_0.52.png
                gene_name: ARHGEF37
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 60 percent done.
ARHGAP18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.469819e-01	ci left: 6.150035e-02	ci right 7.135407e-02	k: 663	n:10000
Cons ci ratio: 3.045107e-01	ci left: 1.381734e-02	ci right 1.887010e-02	k: 162	n:10000
KS ci ratio: 3.581263e-02	ci left: 5.351780e-01	ci right 5.547957e-01	k: 5450	n:10000
ARHGAP18   10000 perm   2 sec   (5584 perm/sec)   p_kst 5.450000e-01   p_cons 1.620000e-02   p_joint 6.630000e-02

Joint ci ratio: 1.118587e-01	ci left: 5.460525e-02	ci right 6.112403e-02	k: 1156	n:20000
Cons ci ratio: 2.504519e-01	ci left: 1.058411e-02	ci right 1.366018e-02	k: 241	n:20000
KS ci ratio: 2.550168e-02	ci left: 5.346138e-01	ci right 5.484741e-01	k: 10831	n:20000
ARHGAP18   20000 perm   4 sec   (5004 perm/sec)   p_kst 5.415500e-01   p_cons 1.205000e-02   p_joint 5.780000e-02

Joint ci ratio: 8.968531e-02	ci left: 5.717552e-02	ci right 6.257677e-02	k: 1795	n:30000
Cons ci ratio: 2.089083e-01	ci left: 1.038754e-02	ci right 1.284175e-02	k: 347	n:30000
KS ci ratio: 2.068242e-02	ci left: 5.392441e-01	ci right 5.505472e-01	k: 16347	n:30000
ARHGAP18   30000 perm   6 sec   (4789 perm/sec)   p_kst 5.449000e-01   p_cons 1.156667e-02   p_joint 5.983333e-02

Joint ci ratio: 8.085479e-02	ci left: 5.325160e-02	ci right 5.776320e-02	k: 2219	n:40000
Cons ci ratio: 1.637448e-01	ci left: 1.296745e-02	ci right 1.530387e-02	k: 564	n:40000
KS ci ratio: 1.793699e-02	ci left: 5.393037e-01	ci right 5.490899e-01	k: 21768	n:40000
ARHGAP18   40000 perm   9 sec   (4645 perm/sec)   p_kst 5.442000e-01   p_cons 1.410000e-02   p_joint 5.547500e-02

Joint ci ratio: 7.317430e-02	ci left: 5.229034e-02	ci right 5.628161e-02	k: 2713	n:50000
Cons ci ratio: 1.448288e-01	ci left: 1.339332e-02	ci right 1.550360e-02	k: 721	n:50000
KS ci ratio: 1.605962e-02	ci left: 5.393217e-01	ci right 5.480732e-01	k: 27185	n:50000
ARHGAP18   50000 perm   11 sec   (4528 perm/sec)   p_kst 5.437000e-01   p_cons 1.442000e-02   p_joint 5.426000e-02

Joint ci ratio: 7.468383e-02	ci left: 4.225810e-02	ci right 4.555287e-02	k: 2633	n:60000
Cons ci ratio: 1.387231e-01	ci left: 1.222157e-02	ci right 1.405930e-02	k: 787	n:60000
KS ci ratio: 1.469838e-02	ci left: 5.384200e-01	ci right 5.464092e-01	k: 32545	n:60000
ARHGAP18   60000 perm   14 sec   (4433 perm/sec)   p_kst 5.424167e-01   p_cons 1.311667e-02   p_joint 4.388333e-02

Joint ci ratio: 7.853087e-02	ci left: 3.302001e-02	ci right 3.573305e-02	k: 2405	n:70000
Cons ci ratio: 1.295318e-01	ci left: 1.207716e-02	ci right 1.376358e-02	k: 903	n:70000
KS ci ratio: 1.359172e-02	ci left: 5.393152e-01	ci right 5.467098e-01	k: 38011	n:70000
ARHGAP18   70000 perm   16 sec   (4358 perm/sec)   p_kst 5.430143e-01   p_cons 1.290000e-02   p_joint 3.435714e-02

Joint ci ratio: 6.257348e-02	ci left: 4.529737e-02	ci right 4.823561e-02	k: 3740	n:80000
Cons ci ratio: 1.210558e-01	ci left: 1.215375e-02	ci right 1.373186e-02	k: 1034	n:80000
KS ci ratio: 1.268486e-02	ci left: 5.406910e-01	ci right 5.476058e-01	k: 43532	n:80000
ARHGAP18   80000 perm   19 sec   (4286 perm/sec)   p_kst 5.441500e-01   p_cons 1.292500e-02   p_joint 4.675000e-02

Joint ci ratio: 6.214820e-02	ci left: 4.101615e-02	ci right 4.365790e-02	k: 3809	n:90000
Cons ci ratio: 1.142507e-01	ci left: 1.217295e-02	ci right 1.365869e-02	k: 1161	n:90000
KS ci ratio: 1.195366e-02	ci left: 5.411282e-01	ci right 5.476467e-01	k: 48995	n:90000
ARHGAP18   90000 perm   21 sec   (4218 perm/sec)   p_kst 5.443889e-01   p_cons 1.290000e-02   p_joint 4.232222e-02

Joint ci ratio: 6.045312e-02	ci left: 3.912887e-02	ci right 4.157788e-02	k: 4034	n:100000
Cons ci ratio: 1.081382e-01	ci left: 1.226815e-02	ci right 1.368030e-02	k: 1296	n:100000
KS ci ratio: 1.132538e-02	ci left: 5.419474e-01	ci right 5.481300e-01	k: 54504	n:100000
ARHGAP18   100000 perm   24 sec   (4153 perm/sec)   p_kst 5.450400e-01   p_cons 1.296000e-02   p_joint 4.034000e-02

Joint ci ratio: 6.261060e-02	ci left: 3.333071e-02	ci right 3.549393e-02	k: 3784	n:110000
Cons ci ratio: 1.027670e-01	ci left: 1.238322e-02	ci right 1.373354e-02	k: 1435	n:110000
KS ci ratio: 1.084084e-02	ci left: 5.401415e-01	ci right 5.460380e-01	k: 59740	n:110000
ARHGAP18   110000 perm   27 sec   (4090 perm/sec)   p_kst 5.430909e-01   p_cons 1.304545e-02   p_joint 3.440000e-02

Joint ci ratio: 5.416807e-02	ci left: 4.068281e-02	ci right 4.295607e-02	k: 5017	n:120000
Cons ci ratio: 9.928007e-02	ci left: 1.218787e-02	ci right 1.346916e-02	k: 1538	n:120000
KS ci ratio: 1.038419e-02	ci left: 5.400346e-01	ci right 5.456800e-01	k: 65143	n:120000
ARHGAP18   120000 perm   30 sec   (4032 perm/sec)   p_kst 5.428583e-01   p_cons 1.281667e-02   p_joint 4.180833e-02

Outputting figure to mutsig2_images.part000000000010/ARHGAP18.4_2052_120000_0.54286_0.012817_0.041808.png
                gene_name: ARHGAP18
               theta_stop: 0.099 
                    nperm: 120000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.043 

Current progress: 61 percent done.
ARHGAP19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.027334e-02	ci left: 9.308177e-01	ci right 9.405266e-01	k: 9358	n:10000
Cons ci ratio: 6.818617e-02	ci left: 2.398567e-01	ci right 2.568901e-01	k: 2483	n:10000
KS ci ratio: 5.945788e-03	ci left: 9.745067e-01	ci right 9.804106e-01	k: 9776	n:10000
ARHGAP19   10000 perm   2 sec   (5739 perm/sec)   p_kst 9.776000e-01   p_cons 2.483000e-01   p_joint 9.358000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP19.4_1533_10000_0.9776_0.2483_0.9358.png
                gene_name: ARHGAP19
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 63 percent done.
ARHGAP26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.039952e-01	ci left: 1.178937e-01	ci right 1.309260e-01	k: 1243	n:10000
Cons ci ratio: 1.685670e-01	ci left: 4.696137e-02	ci right 5.570235e-02	k: 512	n:10000
KS ci ratio: 4.647540e-02	ci left: 4.059166e-01	ci right 4.253326e-01	k: 4156	n:10000
ARHGAP26   10000 perm   2 sec   (5750 perm/sec)   p_kst 4.156000e-01   p_cons 5.120000e-02   p_joint 1.243000e-01

Joint ci ratio: 7.812633e-02	ci left: 1.074153e-01	ci right 1.161980e-01	k: 2235	n:20000
Cons ci ratio: 1.179307e-01	ci left: 4.925481e-02	ci right 5.547615e-02	k: 1046	n:20000
KS ci ratio: 3.279855e-02	ci left: 4.097551e-01	ci right 4.234692e-01	k: 8332	n:20000
ARHGAP26   20000 perm   4 sec   (5137 perm/sec)   p_kst 4.166000e-01   p_cons 5.230000e-02   p_joint 1.117500e-01

Joint ci ratio: 6.798367e-02	ci left: 9.636481e-02	ci right 1.031796e-01	k: 2992	n:30000
Cons ci ratio: 1.022911e-01	ci left: 4.427469e-02	ci right 4.908026e-02	k: 1399	n:30000
KS ci ratio: 2.691523e-02	ci left: 4.085846e-01	ci right 4.197654e-01	k: 12425	n:30000
ARHGAP26   30000 perm   6 sec   (4906 perm/sec)   p_kst 4.141667e-01   p_cons 4.663333e-02   p_joint 9.973333e-02

Joint ci ratio: 5.682298e-02	ci left: 1.032956e-01	ci right 1.093616e-01	k: 4252	n:40000
Cons ci ratio: 8.825691e-02	ci left: 4.492195e-02	ci right 4.909413e-02	k: 1879	n:40000
KS ci ratio: 2.332845e-02	ci left: 4.089424e-01	ci right 4.186201e-01	k: 16551	n:40000
ARHGAP26   40000 perm   8 sec   (4741 perm/sec)   p_kst 4.137750e-01   p_cons 4.697500e-02   p_joint 1.063000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP26.4_2537_40000_0.41378_0.046975_0.1063.png
                gene_name: ARHGAP26
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 64 percent done.
ARHGEF10L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.980390e-01	ci left: 3.395684e-02	ci right 4.151552e-02	k: 376	n:10000
Cons ci ratio: 8.005264e-02	ci left: 1.856005e-01	ci right 2.011785e-01	k: 1933	n:10000
KS ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
ARHGEF10L   10000 perm   2 sec   (5408 perm/sec)   p_kst 9.300000e-03   p_cons 1.933000e-01   p_joint 3.760000e-02

Joint ci ratio: 2.024506e-01	ci left: 1.653520e-02	ci right 2.030666e-02	k: 367	n:20000
Cons ci ratio: 5.734276e-02	ci left: 1.839407e-01	ci right 1.948498e-01	k: 3787	n:20000
KS ci ratio: 2.924988e-01	ci left: 7.598793e-03	ci right 1.024694e-02	k: 177	n:20000
ARHGEF10L   20000 perm   4 sec   (4850 perm/sec)   p_kst 8.850000e-03   p_cons 1.893500e-01   p_joint 1.835000e-02

Joint ci ratio: 1.908535e-01	ci left: 1.254223e-02	ci right 1.521980e-02	k: 415	n:30000
Cons ci ratio: 4.722063e-02	ci left: 1.823704e-01	ci right 1.912236e-01	k: 5603	n:30000
KS ci ratio: 2.248050e-01	ci left: 8.905068e-03	ci right 1.119132e-02	k: 300	n:30000
ARHGEF10L   30000 perm   6 sec   (4634 perm/sec)   p_kst 1.000000e-02   p_cons 1.867667e-01   p_joint 1.383333e-02

Joint ci ratio: 1.475029e-01	ci left: 1.606896e-02	ci right 1.865179e-02	k: 693	n:40000
Cons ci ratio: 3.963059e-02	ci left: 1.926157e-01	ci right 2.004284e-01	k: 7860	n:40000
KS ci ratio: 1.990767e-01	ci left: 8.643905e-03	ci right 1.057829e-02	k: 383	n:40000
ARHGEF10L   40000 perm   9 sec   (4495 perm/sec)   p_kst 9.575000e-03   p_cons 1.965000e-01   p_joint 1.732500e-02

Joint ci ratio: 2.137731e-01	ci left: 5.965828e-03	ci right 7.412340e-03	k: 333	n:50000
Cons ci ratio: 3.561428e-02	ci left: 1.915549e-01	ci right 1.985206e-01	k: 9751	n:50000
KS ci ratio: 1.744273e-01	ci left: 9.127276e-03	ci right 1.089031e-02	k: 499	n:50000
ARHGEF10L   50000 perm   11 sec   (4380 perm/sec)   p_kst 9.980000e-03   p_cons 1.950200e-01   p_joint 6.660000e-03

Joint ci ratio: 1.381909e-01	ci left: 1.231815e-02	ci right 1.416271e-02	k: 793	n:60000
Cons ci ratio: 3.257768e-02	ci left: 1.912234e-01	ci right 1.975728e-01	k: 11663	n:60000
KS ci ratio: 1.573855e-01	ci left: 9.427460e-03	ci right 1.105377e-02	k: 613	n:60000
ARHGEF10L   60000 perm   14 sec   (4286 perm/sec)   p_kst 1.021667e-02   p_cons 1.943833e-01   p_joint 1.321667e-02

Joint ci ratio: 1.024869e-01	ci left: 1.942126e-02	ci right 2.153304e-02	k: 1432	n:70000
Cons ci ratio: 3.007607e-02	ci left: 1.923404e-01	ci right 1.982278e-01	k: 13669	n:70000
KS ci ratio: 1.462619e-01	ci left: 9.413798e-03	ci right 1.091294e-02	k: 710	n:70000
ARHGEF10L   70000 perm   17 sec   (4206 perm/sec)   p_kst 1.014286e-02   p_cons 1.952714e-01   p_joint 2.045714e-02

Joint ci ratio: 1.057842e-01	ci left: 1.598158e-02	ci right 1.777870e-02	k: 1349	n:80000
Cons ci ratio: 2.812673e-02	ci left: 1.926075e-01	ci right 1.981146e-01	k: 15628	n:80000
KS ci ratio: 1.375504e-01	ci left: 9.358306e-03	ci right 1.075257e-02	k: 803	n:80000
ARHGEF10L   80000 perm   19 sec   (4126 perm/sec)   p_kst 1.003750e-02   p_cons 1.953500e-01   p_joint 1.686250e-02

Joint ci ratio: 1.091313e-01	ci left: 1.336147e-02	ci right 1.491452e-02	k: 1271	n:90000
Cons ci ratio: 2.653467e-02	ci left: 1.925706e-01	ci right 1.977602e-01	k: 17564	n:90000
KS ci ratio: 1.296477e-01	ci left: 9.403243e-03	ci right 1.071751e-02	k: 904	n:90000
ARHGEF10L   90000 perm   22 sec   (4061 perm/sec)   p_kst 1.004444e-02   p_cons 1.951556e-01   p_joint 1.412222e-02

Joint ci ratio: 9.437493e-02	ci left: 1.615898e-02	ci right 1.776922e-02	k: 1695	n:100000
Cons ci ratio: 2.510802e-02	ci left: 1.935136e-01	ci right 1.984441e-01	k: 19597	n:100000
KS ci ratio: 1.231529e-01	ci left: 9.411945e-03	ci right 1.065672e-02	k: 1002	n:100000
ARHGEF10L   100000 perm   25 sec   (4005 perm/sec)   p_kst 1.002000e-02   p_cons 1.959700e-01   p_joint 1.695000e-02

Joint ci ratio: 9.725340e-02	ci left: 1.384622e-02	ci right 1.527045e-02	k: 1600	n:110000
Cons ci ratio: 2.394703e-02	ci left: 1.935309e-01	ci right 1.982306e-01	k: 21546	n:110000
KS ci ratio: 1.173841e-01	ci left: 9.446891e-03	ci right 1.063370e-02	k: 1103	n:110000
ARHGEF10L   110000 perm   28 sec   (3915 perm/sec)   p_kst 1.002727e-02   p_cons 1.958727e-01   p_joint 1.454545e-02

Joint ci ratio: 8.619960e-02	ci left: 1.621086e-02	ci right 1.767928e-02	k: 2032	n:120000
Cons ci ratio: 2.292682e-02	ci left: 1.936410e-01	ci right 1.981404e-01	k: 23506	n:120000
KS ci ratio: 1.125456e-01	ci left: 9.444742e-03	ci right 1.057913e-02	k: 1200	n:120000
ARHGEF10L   120000 perm   31 sec   (3862 perm/sec)   p_kst 1.000000e-02   p_cons 1.958833e-01   p_joint 1.693333e-02

Joint ci ratio: 8.563834e-02	ci left: 1.518181e-02	ci right 1.654760e-02	k: 2061	n:130000
Cons ci ratio: 2.204187e-02	ci left: 1.935233e-01	ci right 1.978441e-01	k: 25438	n:130000
KS ci ratio: 1.073449e-01	ci left: 9.608486e-03	ci right 1.070584e-02	k: 1319	n:130000
ARHGEF10L   130000 perm   34 sec   (3811 perm/sec)   p_kst 1.014615e-02   p_cons 1.956769e-01   p_joint 1.585385e-02

Joint ci ratio: 8.040810e-02	ci left: 1.602120e-02	ci right 1.737036e-02	k: 2336	n:140000
Cons ci ratio: 2.123422e-02	ci left: 1.936886e-01	ci right 1.978526e-01	k: 27407	n:140000
KS ci ratio: 1.041658e-01	ci left: 9.492358e-03	ci right 1.054237e-02	k: 1401	n:140000
ARHGEF10L   140000 perm   38 sec   (3715 perm/sec)   p_kst 1.000714e-02   p_cons 1.957643e-01   p_joint 1.668571e-02

Joint ci ratio: 8.199995e-02	ci left: 1.439093e-02	ci right 1.562792e-02	k: 2250	n:150000
Cons ci ratio: 2.050150e-02	ci left: 1.939538e-01	ci right 1.979779e-01	k: 29394	n:150000
KS ci ratio: 1.009786e-01	ci left: 9.444130e-03	ci right 1.045495e-02	k: 1491	n:150000
ARHGEF10L   150000 perm   41 sec   (3638 perm/sec)   p_kst 9.940000e-03   p_cons 1.959600e-01   p_joint 1.500000e-02

Joint ci ratio: 8.016335e-02	ci left: 1.413436e-02	ci right 1.532082e-02	k: 2355	n:160000
Cons ci ratio: 1.985588e-02	ci left: 1.939328e-01	ci right 1.978283e-01	k: 31340	n:160000
KS ci ratio: 9.671780e-02	ci left: 9.670726e-03	ci right 1.065964e-02	k: 1625	n:160000
ARHGEF10L   160000 perm   44 sec   (3600 perm/sec)   p_kst 1.015625e-02   p_cons 1.958750e-01   p_joint 1.471875e-02

Outputting figure to mutsig2_images.part000000000010/ARHGEF10L.4_3952_160000_0.010156_0.19587_0.014719.png
                gene_name: ARHGEF10L
               theta_stop: 0.097 
                    nperm: 160000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0097 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 66 percent done.
ARHGEF15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.633558e-02	ci left: 5.279684e-01	ci right 5.476096e-01	k: 5378	n:10000
KS ci ratio: 9.252758e-03	ci left: 9.427388e-01	ci right 9.515984e-01	k: 9473	n:10000
ARHGEF15   10000 perm   2 sec   (5188 perm/sec)   p_kst 9.473000e-01   p_cons 5.378000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARHGEF15.4_2586_10000_0.9473_0.5378_1.png
                gene_name: ARHGEF15
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
ARHGEF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.633841e-02	ci left: 2.501382e-01	ci right 2.674026e-01	k: 2587	n:10000
Cons ci ratio: 7.703343e-03	ci left: 9.590082e-01	ci right 9.665191e-01	k: 9629	n:10000
KS ci ratio: 9.557126e-02	ci left: 1.370752e-01	ci right 1.509329e-01	k: 1439	n:10000
ARHGEF3   10000 perm   2 sec   (5637 perm/sec)   p_kst 1.439000e-01   p_cons 9.629000e-01   p_joint 2.587000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF3.4_1943_10000_0.1439_0.9629_0.2587.png
                gene_name: ARHGEF3
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 69 percent done.
ARHGEF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.975457e-02	ci left: 4.830544e-01	ci right 5.027497e-01	k: 4929	n:10000
Cons ci ratio: 4.597208e-02	ci left: 4.111978e-01	ci right 4.306483e-01	k: 4209	n:10000
KS ci ratio: 3.795959e-02	ci left: 5.061517e-01	ci right 5.258389e-01	k: 5160	n:10000
ARHGEF4   10000 perm   2 sec   (5788 perm/sec)   p_kst 5.160000e-01   p_cons 4.209000e-01   p_joint 4.929000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF4.4_2213_10000_0.516_0.4209_0.4929.png
                gene_name: ARHGEF4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 70 percent done.
ARHGEF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.005790e-02	ci left: 4.792569e-01	ci right 4.989495e-01	k: 4891	n:10000
Cons ci ratio: 3.055584e-02	ci left: 6.124120e-01	ci right 6.315169e-01	k: 6220	n:10000
KS ci ratio: 7.936649e-02	ci left: 1.882589e-01	ci right 2.039185e-01	k: 1960	n:10000
ARHGEF9   10000 perm   2 sec   (5722 perm/sec)   p_kst 1.960000e-01   p_cons 6.220000e-01   p_joint 4.891000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF9.4_1625_10000_0.196_0.622_0.4891.png
                gene_name: ARHGEF9
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 72 percent done.
AQP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.742576e-02	ci left: 3.961543e-01	ci right 4.155006e-01	k: 4058	n:10000
KS ci ratio: 8.377591e-03	ci left: 9.522126e-01	ci right 9.603189e-01	k: 9564	n:10000
AQP4   10000 perm   2 sec   (6168 perm/sec)   p_kst 9.564000e-01   p_cons 4.058000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/AQP4.3_992_10000_0.9564_0.4058_1.png
                gene_name: AQP4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
ARAF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.211664e-02	ci left: 5.886139e-01	ci right 6.079288e-01	k: 5983	n:10000
Cons ci ratio: 6.304674e-02	ci left: 2.699278e-01	ci right 2.876013e-01	k: 2787	n:10000
KS ci ratio: 1.098941e-02	ci left: 9.219324e-01	ci right 9.322172e-01	k: 9272	n:10000
ARAF   10000 perm   2 sec   (5872 perm/sec)   p_kst 9.272000e-01   p_cons 2.787000e-01   p_joint 5.983000e-01

Outputting figure to mutsig2_images.part000000000010/ARAF.3_1881_10000_0.9272_0.2787_0.5983.png
                gene_name: ARAF
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 75 percent done.
ARC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.312811e-02	ci left: 2.149717e-01	ci right 2.313898e-01	k: 2231	n:10000
Cons ci ratio: 7.924085e-02	ci left: 1.887513e-01	ci right 2.044258e-01	k: 1965	n:10000
KS ci ratio: 8.795749e-02	ci left: 1.583626e-01	ci right 1.730327e-01	k: 1656	n:10000
ARC   10000 perm   2 sec   (6205 perm/sec)   p_kst 1.656000e-01   p_cons 1.965000e-01   p_joint 2.231000e-01

Outputting figure to mutsig2_images.part000000000010/ARC.3_1195_10000_0.1656_0.1965_0.2231.png
                gene_name: ARC
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 76 percent done.
ARCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.005822e-02	ci left: 9.334051e-01	ci right 9.429377e-01	k: 9383	n:10000
Cons ci ratio: 2.205248e-02	ci left: 7.510997e-01	ci right 7.679489e-01	k: 7596	n:10000
KS ci ratio: 1.457434e-02	ci left: 8.720385e-01	ci right 8.849402e-01	k: 8786	n:10000
ARCN1   10000 perm   2 sec   (5989 perm/sec)   p_kst 8.786000e-01   p_cons 7.596000e-01   p_joint 9.383000e-01

Outputting figure to mutsig2_images.part000000000010/ARCN1.3_1576_10000_0.8786_0.7596_0.9383.png
                gene_name: ARCN1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 78 percent done.
ARF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
Cons ci ratio: 5.868840e-02	ci left: 2.993551e-01	ci right 3.175566e-01	k: 3084	n:10000
KS ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
ARF4   10000 perm   1 sec   (7302 perm/sec)   p_kst 1.080000e-02   p_cons 3.084000e-01   p_joint 1.080000e-02

Joint ci ratio: 3.167357e-01	ci left: 6.397356e-03	ci right 8.849056e-03	k: 151	n:20000
Cons ci ratio: 4.151367e-02	ci left: 3.019033e-01	ci right 3.147525e-01	k: 6166	n:20000
KS ci ratio: 2.703794e-01	ci left: 8.993904e-03	ci right 1.185112e-02	k: 207	n:20000
ARF4   20000 perm   3 sec   (6302 perm/sec)   p_kst 1.035000e-02   p_cons 3.083000e-01   p_joint 7.550000e-03

Joint ci ratio: 2.225749e-01	ci left: 9.093958e-03	ci right 1.140237e-02	k: 306	n:30000
Cons ci ratio: 3.382573e-02	ci left: 3.039722e-01	ci right 3.144647e-01	k: 9276	n:30000
KS ci ratio: 2.225749e-01	ci left: 9.093958e-03	ci right 1.140237e-02	k: 306	n:30000
ARF4   30000 perm   5 sec   (5958 perm/sec)   p_kst 1.020000e-02   p_cons 3.092000e-01   p_joint 1.020000e-02

Joint ci ratio: 1.960075e-01	ci left: 8.929192e-03	ci right 1.089294e-02	k: 395	n:40000
Cons ci ratio: 2.928596e-02	ci left: 3.047968e-01	ci right 3.138808e-01	k: 12373	n:40000
KS ci ratio: 1.960075e-01	ci left: 8.929192e-03	ci right 1.089294e-02	k: 395	n:40000
ARF4   40000 perm   7 sec   (5731 perm/sec)   p_kst 9.875000e-03   p_cons 3.093250e-01   p_joint 9.875000e-03

Joint ci ratio: 1.742514e-01	ci left: 9.146410e-03	ci right 1.091117e-02	k: 500	n:50000
Cons ci ratio: 2.614704e-02	ci left: 3.060469e-01	ci right 3.141752e-01	k: 15505	n:50000
KS ci ratio: 1.742514e-01	ci left: 9.146410e-03	ci right 1.091117e-02	k: 500	n:50000
ARF4   50000 perm   9 sec   (5588 perm/sec)   p_kst 1.000000e-02   p_cons 3.101000e-01   p_joint 1.000000e-02

Joint ci ratio: 1.581682e-01	ci left: 9.331373e-03	ci right 1.094987e-02	k: 607	n:60000
Cons ci ratio: 2.392029e-02	ci left: 3.054863e-01	ci right 3.128988e-01	k: 18551	n:60000
KS ci ratio: 1.581682e-01	ci left: 9.331373e-03	ci right 1.094987e-02	k: 607	n:60000
ARF4   60000 perm   11 sec   (5461 perm/sec)   p_kst 1.011667e-02   p_cons 3.091833e-01   p_joint 1.011667e-02

Joint ci ratio: 1.464702e-01	ci left: 9.386263e-03	ci right 1.088333e-02	k: 708	n:70000
Cons ci ratio: 2.219412e-02	ci left: 3.048372e-01	ci right 3.116930e-01	k: 21578	n:70000
KS ci ratio: 1.464702e-01	ci left: 9.386263e-03	ci right 1.088333e-02	k: 708	n:70000
ARF4   70000 perm   13 sec   (5347 perm/sec)   p_kst 1.011429e-02   p_cons 3.082571e-01   p_joint 1.011429e-02

Joint ci ratio: 1.385991e-01	ci left: 9.213441e-03	ci right 1.059745e-02	k: 791	n:80000
Cons ci ratio: 2.072529e-02	ci left: 3.057863e-01	ci right 3.122026e-01	k: 24719	n:80000
KS ci ratio: 1.385991e-01	ci left: 9.213441e-03	ci right 1.059745e-02	k: 791	n:80000
ARF4   80000 perm   15 sec   (5238 perm/sec)   p_kst 9.887500e-03   p_cons 3.089875e-01   p_joint 9.887500e-03

Joint ci ratio: 1.303773e-01	ci left: 9.295713e-03	ci right 1.060283e-02	k: 894	n:90000
Cons ci ratio: 1.954762e-02	ci left: 3.058045e-01	ci right 3.118523e-01	k: 27794	n:90000
KS ci ratio: 1.303773e-01	ci left: 9.295713e-03	ci right 1.060283e-02	k: 894	n:90000
ARF4   90000 perm   18 sec   (5132 perm/sec)   p_kst 9.933333e-03   p_cons 3.088222e-01   p_joint 9.933333e-03

Joint ci ratio: 1.224153e-01	ci left: 9.528294e-03	ci right 1.078036e-02	k: 1014	n:100000
Cons ci ratio: 1.851645e-02	ci left: 3.066054e-01	ci right 3.123457e-01	k: 30947	n:100000
KS ci ratio: 1.224153e-01	ci left: 9.528294e-03	ci right 1.078036e-02	k: 1014	n:100000
ARF4   100000 perm   20 sec   (5038 perm/sec)   p_kst 1.014000e-02   p_cons 3.094700e-01   p_joint 1.014000e-02

Joint ci ratio: 1.171165e-01	ci left: 9.491025e-03	ci right 1.068047e-02	k: 1108	n:110000
Cons ci ratio: 1.763816e-02	ci left: 3.071404e-01	ci right 3.126151e-01	k: 34086	n:110000
KS ci ratio: 1.171165e-01	ci left: 9.491025e-03	ci right 1.068047e-02	k: 1108	n:110000
ARF4   110000 perm   22 sec   (4944 perm/sec)   p_kst 1.007273e-02   p_cons 3.098727e-01   p_joint 1.007273e-02

Joint ci ratio: 1.128306e-01	ci left: 9.396139e-03	ci right 1.052773e-02	k: 1194	n:120000
Cons ci ratio: 1.687601e-02	ci left: 3.075417e-01	ci right 3.127842e-01	k: 37219	n:120000
KS ci ratio: 1.128306e-01	ci left: 9.396139e-03	ci right 1.052773e-02	k: 1194	n:120000
ARF4   120000 perm   25 sec   (4858 perm/sec)   p_kst 9.950000e-03   p_cons 3.101583e-01   p_joint 9.950000e-03

Joint ci ratio: 1.081759e-01	ci left: 9.458748e-03	ci right 1.054789e-02	k: 1299	n:130000
Cons ci ratio: 1.620395e-02	ci left: 3.079084e-01	ci right 3.129462e-01	k: 40355	n:130000
KS ci ratio: 1.081759e-01	ci left: 9.458748e-03	ci right 1.054789e-02	k: 1299	n:130000
ARF4   130000 perm   27 sec   (4771 perm/sec)   p_kst 9.992308e-03   p_cons 3.104231e-01   p_joint 9.992308e-03

Joint ci ratio: 1.045051e-01	ci left: 9.429734e-03	ci right 1.047643e-02	k: 1392	n:140000
Cons ci ratio: 1.562554e-02	ci left: 3.076989e-01	ci right 3.125518e-01	k: 43417	n:140000
KS ci ratio: 1.045051e-01	ci left: 9.429734e-03	ci right 1.047643e-02	k: 1392	n:140000
ARF4   140000 perm   30 sec   (4647 perm/sec)   p_kst 9.942857e-03   p_cons 3.101214e-01   p_joint 9.942857e-03

Joint ci ratio: 1.004698e-01	ci left: 9.541635e-03	ci right 1.055744e-02	k: 1506	n:150000
Cons ci ratio: 1.509719e-02	ci left: 3.077397e-01	ci right 3.124276e-01	k: 46512	n:150000
KS ci ratio: 1.004698e-01	ci left: 9.541635e-03	ci right 1.055744e-02	k: 1506	n:150000
ARF4   150000 perm   33 sec   (4576 perm/sec)   p_kst 1.004000e-02   p_cons 3.100800e-01   p_joint 1.004000e-02

Joint ci ratio: 9.714118e-02	ci left: 9.585327e-03	ci right 1.057005e-02	k: 1611	n:160000
Cons ci ratio: 1.461562e-02	ci left: 3.078776e-01	ci right 3.124168e-01	k: 49623	n:160000
KS ci ratio: 9.714118e-02	ci left: 9.585327e-03	ci right 1.057005e-02	k: 1611	n:160000
ARF4   160000 perm   36 sec   (4504 perm/sec)   p_kst 1.006875e-02   p_cons 3.101437e-01   p_joint 1.006875e-02

Outputting figure to mutsig2_images.part000000000010/ARF4.3_567_160000_0.010069_0.31014_0.010069.png
                gene_name: ARF4
               theta_stop: 0.097 
                    nperm: 160000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0096 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.010 
     ci_joint_bounds_left: 0.0096 
    ci_joint_bounds_right: 0.011 

Current progress: 79 percent done.
ARFGAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.886657e-02	ci left: 1.902285e-01	ci right 2.059478e-01	k: 1980	n:10000
Cons ci ratio: 3.073150e-02	ci left: 6.096996e-01	ci right 6.288309e-01	k: 6193	n:10000
KS ci ratio: 1.071161e-01	ci left: 1.117389e-01	ci right 1.244845e-01	k: 1180	n:10000
ARFGAP2   10000 perm   2 sec   (6089 perm/sec)   p_kst 1.180000e-01   p_cons 6.193000e-01   p_joint 1.980000e-01

Joint ci ratio: 5.990299e-02	ci left: 1.710410e-01	ci right 1.816533e-01	k: 3526	n:20000
Cons ci ratio: 2.198809e-02	ci left: 6.069610e-01	ci right 6.205059e-01	k: 12275	n:20000
KS ci ratio: 7.640568e-02	ci left: 1.118388e-01	ci right 1.207730e-01	k: 2325	n:20000
ARFGAP2   20000 perm   4 sec   (5438 perm/sec)   p_kst 1.162500e-01   p_cons 6.137500e-01   p_joint 1.763000e-01

Outputting figure to mutsig2_images.part000000000010/ARFGAP2.3_1630_20000_0.11625_0.61375_0.1763.png
                gene_name: ARFGAP2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 81 percent done.
ARFGAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.191022e-02	ci left: 1.467809e-01	ci right 1.610214e-01	k: 1538	n:10000
Cons ci ratio: 5.103114e-02	ci left: 3.615207e-01	ci right 3.805545e-01	k: 3710	n:10000
KS ci ratio: 1.068087e-01	ci left: 1.123248e-01	ci right 1.250982e-01	k: 1186	n:10000
ARFGAP3   10000 perm   2 sec   (5839 perm/sec)   p_kst 1.186000e-01   p_cons 3.710000e-01   p_joint 1.538000e-01

Joint ci ratio: 6.830217e-02	ci left: 1.365491e-01	ci right 1.462554e-01	k: 2827	n:20000
Cons ci ratio: 3.583057e-02	ci left: 3.676365e-01	ci right 3.811000e-01	k: 7487	n:20000
KS ci ratio: 7.514990e-02	ci left: 1.152317e-01	ci right 1.242791e-01	k: 2394	n:20000
ARFGAP3   20000 perm   4 sec   (5266 perm/sec)   p_kst 1.197000e-01   p_cons 3.743500e-01   p_joint 1.413500e-01

Outputting figure to mutsig2_images.part000000000010/ARFGAP3.3_1615_20000_0.1197_0.37435_0.14135.png
                gene_name: ARFGAP3
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 82 percent done.
ARGFX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.880420e-02	ci left: 4.951504e-01	ci right 5.148467e-01	k: 5050	n:10000
Cons ci ratio: 2.830889e-02	ci left: 6.478024e-01	ci right 6.665060e-01	k: 6572	n:10000
KS ci ratio: 5.908968e-02	ci left: 2.964797e-01	ci right 3.146337e-01	k: 3055	n:10000
ARGFX   10000 perm   2 sec   (6608 perm/sec)   p_kst 3.055000e-01   p_cons 6.572000e-01   p_joint 5.050000e-01

Outputting figure to mutsig2_images.part000000000010/ARGFX.3_964_10000_0.3055_0.6572_0.505.png
                gene_name: ARGFX
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 84 percent done.
ARHGAP17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.455374e-02	ci left: 2.606239e-01	ci right 2.781107e-01	k: 2693	n:10000
Cons ci ratio: 1.086875e-01	ci left: 1.088101e-01	ci right 1.214151e-01	k: 1150	n:10000
KS ci ratio: 5.955229e-02	ci left: 2.932083e-01	ci right 3.113070e-01	k: 3022	n:10000
ARHGAP17   10000 perm   2 sec   (5864 perm/sec)   p_kst 3.022000e-01   p_cons 1.150000e-01   p_joint 2.693000e-01

Joint ci ratio: 5.565396e-02	ci left: 1.931890e-01	ci right 2.042987e-01	k: 3974	n:20000
Cons ci ratio: 7.622039e-02	ci left: 1.123305e-01	ci right 1.212812e-01	k: 2335	n:20000
KS ci ratio: 4.212495e-02	ci left: 2.957405e-01	ci right 3.085171e-01	k: 6042	n:20000
ARHGAP17   20000 perm   4 sec   (5184 perm/sec)   p_kst 3.021000e-01   p_cons 1.167500e-01   p_joint 1.987000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP17.3_2726_20000_0.3021_0.11675_0.1987.png
                gene_name: ARHGAP17
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 85 percent done.
ARHGAP30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.245670e-01	ci left: 8.446093e-02	ci right 9.577916e-02	k: 900	n:10000
Cons ci ratio: 1.870845e-02	ci left: 8.067404e-01	ci right 8.220760e-01	k: 8145	n:10000
KS ci ratio: 1.840292e-01	ci left: 3.939440e-02	ci right 4.747430e-02	k: 433	n:10000
ARHGAP30   10000 perm   2 sec   (5383 perm/sec)   p_kst 4.330000e-02   p_cons 8.145000e-01   p_joint 9.000000e-02

Joint ci ratio: 8.098908e-02	ci left: 1.005877e-01	ci right 1.091276e-01	k: 2096	n:20000
Cons ci ratio: 1.382057e-02	ci left: 7.952972e-01	ci right 8.064152e-01	k: 16018	n:20000
KS ci ratio: 1.293542e-01	ci left: 4.105370e-02	ci right 4.677985e-02	k: 877	n:20000
ARHGAP30   20000 perm   4 sec   (4828 perm/sec)   p_kst 4.385000e-02   p_cons 8.009000e-01   p_joint 1.048000e-01

Joint ci ratio: 5.698716e-02	ci left: 1.323373e-01	ci right 1.401332e-01	k: 4086	n:30000
Cons ci ratio: 1.079972e-02	ci left: 8.100881e-01	ci right 8.189176e-01	k: 24436	n:30000
KS ci ratio: 1.052425e-01	ci left: 4.186922e-02	ci right 4.655289e-02	k: 1325	n:30000
ARHGAP30   30000 perm   6 sec   (4650 perm/sec)   p_kst 4.416667e-02   p_cons 8.145333e-01   p_joint 1.362000e-01

Joint ci ratio: 5.969901e-02	ci left: 9.438781e-02	ci right 1.002208e-01	k: 3891	n:40000
Cons ci ratio: 9.358458e-03	ci left: 8.105043e-01	ci right 8.181500e-01	k: 32574	n:40000
KS ci ratio: 9.144106e-02	ci left: 4.191296e-02	ci right 4.595359e-02	k: 1756	n:40000
ARHGAP30   40000 perm   9 sec   (4536 perm/sec)   p_kst 4.390000e-02   p_cons 8.143500e-01   p_joint 9.727500e-02

Outputting figure to mutsig2_images.part000000000010/ARHGAP30.3_3354_40000_0.0439_0.81435_0.097275.png
                gene_name: ARHGAP30
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.10 

Current progress: 87 percent done.
ARHGDIB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.376126e-02	ci left: 4.353266e-01	ci right 4.549054e-01	k: 4451	n:10000
KS ci ratio: 3.784578e-02	ci left: 5.076523e-01	ci right 5.273375e-01	k: 5175	n:10000
ARHGDIB   10000 perm   2 sec   (6652 perm/sec)   p_kst 5.175000e-01   p_cons 4.451000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARHGDIB.3_626_10000_0.5175_0.4451_1.png
                gene_name: ARHGDIB
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
ARHGEF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.810253e-03	ci left: 9.579609e-01	ci right 9.655670e-01	k: 9619	n:10000
Cons ci ratio: 1.496089e-02	ci left: 8.662129e-01	ci right 8.793691e-01	k: 8729	n:10000
KS ci ratio: 2.763342e-02	ci left: 6.586720e-01	ci right 6.772301e-01	k: 6680	n:10000
ARHGEF17   10000 perm   2 sec   (4224 perm/sec)   p_kst 6.680000e-01   p_cons 8.729000e-01   p_joint 9.619000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGEF17.3_6276_10000_0.668_0.8729_0.9619.png
                gene_name: ARHGEF17
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 90 percent done.
AQP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.052715e-02	ci left: 9.277156e-01	ci right 9.376305e-01	k: 9328	n:10000
Cons ci ratio: 1.639181e-02	ci left: 8.440725e-01	ci right 8.581223e-01	k: 8512	n:10000
KS ci ratio: 3.923333e-02	ci left: 4.896515e-01	ci right 5.093488e-01	k: 4995	n:10000
AQP3   10000 perm   1 sec   (6688 perm/sec)   p_kst 4.995000e-01   p_cons 8.512000e-01   p_joint 9.328000e-01

Outputting figure to mutsig2_images.part000000000010/AQP3.2_903_10000_0.4995_0.8512_0.9328.png
                gene_name: AQP3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 91 percent done.
AQP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.350728e-03	ci left: 9.789852e-01	ci right 9.843289e-01	k: 9818	n:10000
KS ci ratio: 7.577795e-02	ci left: 2.030380e-01	ci right 2.191306e-01	k: 2110	n:10000
AQP6   10000 perm   2 sec   (6639 perm/sec)   p_kst 2.110000e-01   p_cons 9.818000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/AQP6.2_865_10000_0.211_0.9818_1.png
                gene_name: AQP6
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
ARFIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.061433e-02	ci left: 6.115078e-01	ci right 6.306216e-01	k: 6211	n:10000
Cons ci ratio: 1.651998e-01	ci left: 4.888186e-02	ci right 5.778061e-02	k: 532	n:10000
KS ci ratio: 2.567324e-02	ci left: 6.907094e-01	ci right 7.087742e-01	k: 6998	n:10000
ARFIP2   10000 perm   2 sec   (6658 perm/sec)   p_kst 6.998000e-01   p_cons 5.320000e-02   p_joint 6.211000e-01

Joint ci ratio: 3.267741e-02	ci left: 4.115507e-01	ci right 4.252731e-01	k: 8368	n:20000
Cons ci ratio: 1.182888e-01	ci left: 4.896323e-02	ci right 5.516782e-02	k: 1040	n:20000
KS ci ratio: 1.815638e-02	ci left: 6.933438e-01	ci right 7.060981e-01	k: 13995	n:20000
ARFIP2   20000 perm   3 sec   (5818 perm/sec)   p_kst 6.997500e-01   p_cons 5.200000e-02   p_joint 4.184000e-01

Joint ci ratio: 2.663435e-02	ci left: 4.136744e-01	ci right 4.248746e-01	k: 12578	n:30000
Cons ci ratio: 9.608113e-02	ci left: 5.003553e-02	ci right 5.511823e-02	k: 1576	n:30000
KS ci ratio: 1.480300e-02	ci left: 6.951470e-01	ci right 7.055475e-01	k: 21011	n:30000
ARFIP2   30000 perm   5 sec   (5599 perm/sec)   p_kst 7.003667e-01   p_cons 5.253333e-02   p_joint 4.192667e-01

Outputting figure to mutsig2_images.part000000000010/ARFIP2.2_1054_30000_0.70037_0.052533_0.41927.png
                gene_name: ARFIP2
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 94 percent done.
ARHGAP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.956843e-02	ci left: 1.874712e-01	ci right 2.031067e-01	k: 1952	n:10000
Cons ci ratio: 1.105967e-01	ci left: 1.053948e-01	ci right 1.178325e-01	k: 1115	n:10000
KS ci ratio: 6.849801e-02	ci left: 2.381767e-01	ci right 2.551711e-01	k: 2466	n:10000
ARHGAP10   10000 perm   2 sec   (6021 perm/sec)   p_kst 2.466000e-01   p_cons 1.115000e-01   p_joint 1.952000e-01

Joint ci ratio: 6.983390e-02	ci left: 1.313267e-01	ci right 1.408794e-01	k: 2721	n:20000
Cons ci ratio: 7.384239e-02	ci left: 1.189210e-01	ci right 1.280888e-01	k: 2469	n:20000
KS ci ratio: 4.846191e-02	ci left: 2.404897e-01	ci right 2.524841e-01	k: 4929	n:20000
ARHGAP10   20000 perm   4 sec   (5403 perm/sec)   p_kst 2.464500e-01   p_cons 1.234500e-01   p_joint 1.360500e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP10.2_2453_20000_0.24645_0.12345_0.13605.png
                gene_name: ARHGAP10
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 96 percent done.
ARHGAP22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.523286e-02	ci left: 2.565673e-01	ci right 2.739696e-01	k: 2652	n:10000
KS ci ratio: 1.380573e-02	ci left: 8.833963e-01	ci right 8.957757e-01	k: 8897	n:10000
ARHGAP22   10000 perm   2 sec   (6130 perm/sec)   p_kst 8.897000e-01   p_cons 2.652000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000010/ARHGAP22.2_2137_10000_0.8897_0.2652_1.png
                gene_name: ARHGAP22
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
ARHGAP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.609381e-01	ci left: 5.147727e-02	ci right 6.058353e-02	k: 559	n:10000
Cons ci ratio: 1.020373e-01	ci left: 1.219999e-01	ci right 1.352172e-01	k: 1285	n:10000
KS ci ratio: 1.234410e-01	ci left: 8.591861e-02	ci right 9.732058e-02	k: 915	n:10000
ARHGAP6   10000 perm   2 sec   (5436 perm/sec)   p_kst 9.150000e-02   p_cons 1.285000e-01   p_joint 5.590000e-02

Joint ci ratio: 5.668827e-02	ci left: 1.874515e-01	ci right 1.984379e-01	k: 3858	n:20000
Cons ci ratio: 7.188020e-02	ci left: 1.247774e-01	ci right 1.341306e-01	k: 2588	n:20000
KS ci ratio: 8.873490e-02	ci left: 8.494170e-02	ci right 9.287829e-02	k: 1777	n:20000
ARHGAP6   20000 perm   4 sec   (5016 perm/sec)   p_kst 8.885000e-02   p_cons 1.294000e-01   p_joint 1.929000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP6.2_3099_20000_0.08885_0.1294_0.1929.png
                gene_name: ARHGAP6
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 99 percent done.
ARHGAP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.066070e-02	ci left: 9.260623e-01	ci right 9.360848e-01	k: 9312	n:10000
Cons ci ratio: 4.686731e-03	ci left: 9.835003e-01	ci right 9.882104e-01	k: 9860	n:10000
KS ci ratio: 1.869607e-02	ci left: 8.069435e-01	ci right 8.222728e-01	k: 8147	n:10000
ARHGAP8   10000 perm   2 sec   (6192 perm/sec)   p_kst 8.147000e-01   p_cons 9.860000e-01   p_joint 9.312000e-01

Outputting figure to mutsig2_images.part000000000010/ARHGAP8.2_1443_10000_0.8147_0.986_0.9312.png
                gene_name: ARHGAP8
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000010
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 10 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1650>
Subject: Job 9893822: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1650>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000011> was used as the working directory.
Started at Fri Oct  5 23:53:21 2012
Results reported at Sat Oct  6 00:01:39 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000011.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000011.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 11  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000011.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    495.71 sec.
    Max Memory :      3607 MB
    Max Swap   :      5890 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
11
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 11
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 11: processing genes 903 - 992
Calculating significance of each gene.
Using projection method.
903	ARID3B	8.515066e-01
904	ARID3C	8.177715e-01
905	ARID4A	5.693293e-02
906	ARID4B	7.868881e-01
907	ARID5A	9.033212e-01
908	ARID5B	5.301567e-01
909	ARIH1	7.919050e-01
910	ARIH2	9.307081e-01
911	ARL1	3.292635e-01
912	ARL10	1
913	ARL11	2.237032e-01
914	ARL13A	4.064444e-01
915	ARL13B	1.693463e-01
916	ARL14	1
917	ARL15	1.751997e-01
918	ARL16	1
919	ARL2	2.791822e-01
920	ARL2BP	1.182694e-03
921	ARL3	6.291601e-01
922	ARL4A	1
923	ARL4C	1
924	ARL4D	3.102916e-01
925	ARL5A	1.826891e-01
926	ARL5B	1
927	ARL6	1
928	ARL6IP1	1
929	ARL6IP4	1
930	ARL6IP5	6.344616e-01
931	ARL6IP6	6.247457e-01
932	ARL8A	5.850469e-01
933	ARL8B	2.243491e-01
934	ARL9	1
935	ARMC1	6.862318e-01
936	ARMC10	4.538666e-01
937	ARMC2	4.949434e-01
In gene ARMC3 the following bins exceed PROBCAP:
    COAD-AA-3852	categ 6	N = 2674    n = 1	mu =   3.62e-07
938	ARMC3	8.398372e-02
939	ARMC4	2.068266e-03
940	ARMC5	9.134525e-01
941	ARMC6	1
942	ARMC7	1
943	ARMC8	2.387469e-01
944	ARMC9	7.497997e-01
945	ARMCX1	1.784277e-02
946	ARMCX2	7.749996e-01
947	ARMCX3	7.942627e-01
948	ARMCX5	2.411644e-01
949	ARMCX6	1
950	ARMS2	1
951	ARNT	1.557335e-01
952	ARNT2	4.847742e-01
953	ARNTL	1.473529e-02
954	ARNTL2	4.865154e-01
955	ARPC1A	5.469697e-02
956	ARPC1B	5.758523e-01
957	ARPC2	6.485639e-01
958	ARPC3	1
959	ARPC4	1
960	ARPC5	3.905025e-01
961	ARPC5L	1.025996e-01
962	ARPM1	8.074779e-01
963	ARPP19	1
964	ARPP21	1.770479e-01
965	ARR3	1
966	ARRB1	8.869536e-01
967	ARRB2	1
968	ARRDC1	7.743680e-01
969	ARRDC2	7.648477e-01
970	ARRDC3	4.504278e-01
971	ARRDC4	6.013718e-01
972	ARRDC5	7.555055e-01
973	ARSA	8.036186e-01
974	ARSB	3.516392e-01
975	ARSD	4.515062e-01
976	ARSE	8.263527e-01
977	ARSF	7.484458e-01
978	ARSG	1.520671e-01
979	ARSH	1.554267e-01
980	ARSI	6.915794e-01
981	ARSJ	3.418251e-01
982	ARSK	9.020454e-01
983	ART1	6.253050e-01
984	ART3	4.072290e-01
985	ART4	3.195806e-02
986	ART5	2.589824e-01
987	ARTN	1
In gene ARV1 the following bins exceed PROBCAP:
    COAD-AA-A01Z	categ 6	N = 836     n = 1	mu =   3.62e-07
988	ARV1	4.239460e-02
989	ARVCF	1
990	ARX	5.118173e-01
991	AS3MT	6.799186e-01
992	ASAH1	2.523332e-01
Done

Running MutSig 2:
Scatter job 11: processing genes 903 - 992
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ARMC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.448266e-02	ci left: 5.539127e-01	ci right 5.734502e-01	k: 5637	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ARMC4   10000 perm   3 sec   (3295 perm/sec)   p_kst 1   p_cons 5.637000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARMC4.13_3211_10000_1_0.5637_1.png
                gene_name: ARMC4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
ARID4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.284443e-02	ci left: 8.971340e-01	ci right 9.088300e-01	k: 9031	n:10000
Cons ci ratio: 4.243945e-02	ci left: 4.504939e-01	ci right 4.701293e-01	k: 4603	n:10000
KS ci ratio: 1.566719e-02	ci left: 8.553907e-01	ci right 8.689975e-01	k: 8623	n:10000
ARID4A   10000 perm   3 sec   (3990 perm/sec)   p_kst 8.623000e-01   p_cons 4.603000e-01   p_joint 9.031000e-01

Outputting figure to mutsig2_images.part000000000011/ARID4A.10_3866_10000_0.8623_0.4603_0.9031.png
                gene_name: ARID4A
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 4 percent done.
ARNTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.719853e-02	ci left: 6.657201e-01	ci right 6.841779e-01	k: 6750	n:10000
Cons ci ratio: 5.470120e-02	ci left: 3.299187e-01	ci right 3.485750e-01	k: 3392	n:10000
KS ci ratio: 4.309433e-02	ci left: 4.429091e-01	ci right 4.625185e-01	k: 4527	n:10000
ARNTL   10000 perm   2 sec   (4267 perm/sec)   p_kst 4.527000e-01   p_cons 3.392000e-01   p_joint 6.750000e-01

Outputting figure to mutsig2_images.part000000000011/ARNTL.10_1957_10000_0.4527_0.3392_0.675.png
                gene_name: ARNTL
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 7 percent done.
ARMC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.822696e-02	ci left: 1.927894e-01	ci right 2.085854e-01	k: 2006	n:10000
Cons ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
KS ci ratio: 2.682742e-02	ci left: 6.717631e-01	ci right 6.901314e-01	k: 6810	n:10000
ARMC3   10000 perm   2 sec   (4447 perm/sec)   p_kst 6.810000e-01   p_cons 3.560000e-02   p_joint 2.006000e-01

Joint ci ratio: 5.791877e-02	ci left: 1.809249e-01	ci right 1.917665e-01	k: 3726	n:20000
Cons ci ratio: 1.582921e-01	ci left: 2.739088e-02	ci right 3.214714e-02	k: 594	n:20000
KS ci ratio: 1.901852e-02	ci left: 6.733838e-01	ci right 6.863639e-01	k: 13598	n:20000
ARMC3   20000 perm   5 sec   (4162 perm/sec)   p_kst 6.799000e-01   p_cons 2.970000e-02   p_joint 1.863000e-01

Joint ci ratio: 5.852163e-02	ci left: 1.262796e-01	ci right 1.339256e-01	k: 3902	n:30000
Cons ci ratio: 1.301886e-01	ci left: 2.742065e-02	ci right 3.127122e-02	k: 879	n:30000
KS ci ratio: 1.602094e-02	ci left: 6.607978e-01	ci right 6.715034e-01	k: 19985	n:30000
ARMC3   30000 perm   7 sec   (4049 perm/sec)   p_kst 6.661667e-01   p_cons 2.930000e-02   p_joint 1.300667e-01

Joint ci ratio: 5.081615e-02	ci left: 1.261994e-01	ci right 1.328045e-01	k: 5179	n:40000
Cons ci ratio: 1.119307e-01	ci left: 2.808243e-02	ci right 3.143630e-02	k: 1189	n:40000
KS ci ratio: 1.387437e-02	ci left: 6.615292e-01	ci right 6.707967e-01	k: 26647	n:40000
ARMC3   40000 perm   10 sec   (3963 perm/sec)   p_kst 6.661750e-01   p_cons 2.972500e-02   p_joint 1.294750e-01

Joint ci ratio: 4.787762e-02	ci left: 1.153824e-01	ci right 1.210620e-01	k: 5910	n:50000
Cons ci ratio: 1.006559e-01	ci left: 2.795622e-02	ci right 3.093875e-02	k: 1471	n:50000
KS ci ratio: 1.244134e-02	ci left: 6.608835e-01	ci right 6.691773e-01	k: 33252	n:50000
ARMC3   50000 perm   13 sec   (3864 perm/sec)   p_kst 6.650400e-01   p_cons 2.942000e-02   p_joint 1.182000e-01

Joint ci ratio: 4.348465e-02	ci left: 1.166835e-01	ci right 1.218867e-01	k: 7156	n:60000
Cons ci ratio: 9.238293e-02	ci left: 2.778582e-02	ci right 3.049331e-02	k: 1747	n:60000
KS ci ratio: 1.133757e-02	ci left: 6.620260e-01	ci right 6.695913e-01	k: 39949	n:60000
ARMC3   60000 perm   16 sec   (3842 perm/sec)   p_kst 6.658167e-01   p_cons 2.911667e-02   p_joint 1.192667e-01

Outputting figure to mutsig2_images.part000000000011/ARMC3.7_2691_60000_0.66582_0.029117_0.11927.png
                gene_name: ARMC3
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 9 percent done.
ARPP21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.577101e-02	ci left: 6.890962e-01	ci right 7.071882e-01	k: 6982	n:10000
KS ci ratio: 2.425669e-02	ci left: 7.142157e-01	ci right 7.318542e-01	k: 7231	n:10000
ARPP21   10000 perm   3 sec   (3939 perm/sec)   p_kst 7.231000e-01   p_cons 6.982000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARPP21.7_2524_10000_0.7231_0.6982_1.png
                gene_name: ARPP21
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
ARL2BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.447174e-02	ci left: 8.735722e-01	ci right 8.864055e-01	k: 8801	n:10000
KS ci ratio: 1.639828e-02	ci left: 8.439706e-01	ci right 8.580243e-01	k: 8511	n:10000
ARL2BP   10000 perm   2 sec   (5245 perm/sec)   p_kst 8.511000e-01   p_cons 8.801000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARL2BP.6_516_10000_0.8511_0.8801_1.png
                gene_name: ARL2BP
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
ARMC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.501991e-02	ci left: 3.273369e-01	ci right 3.459583e-01	k: 3366	n:10000
Cons ci ratio: 1.065542e-01	ci left: 1.128131e-01	ci right 1.256096e-01	k: 1191	n:10000
KS ci ratio: 2.734739e-02	ci left: 6.633033e-01	ci right 6.817961e-01	k: 6726	n:10000
ARMC2   10000 perm   3 sec   (3721 perm/sec)   p_kst 6.726000e-01   p_cons 1.191000e-01   p_joint 3.366000e-01

Joint ci ratio: 3.964816e-02	ci left: 3.217425e-01	ci right 3.348075e-01	k: 6565	n:20000
Cons ci ratio: 7.587147e-02	ci left: 1.132647e-01	ci right 1.222468e-01	k: 2354	n:20000
KS ci ratio: 1.874818e-02	ci left: 6.796166e-01	ci right 6.925292e-01	k: 13722	n:20000
ARMC2   20000 perm   6 sec   (3160 perm/sec)   p_kst 6.861000e-01   p_cons 1.177000e-01   p_joint 3.282500e-01

Outputting figure to mutsig2_images.part000000000011/ARMC2.6_2672_20000_0.6861_0.1177_0.32825.png
                gene_name: ARMC2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 15 percent done.
ARMC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.434813e-02	ci left: 8.754132e-01	ci right 8.881634e-01	k: 8819	n:10000
Cons ci ratio: 9.122527e-03	ci left: 9.441937e-01	ci right 9.529427e-01	k: 9487	n:10000
KS ci ratio: 3.368349e-02	ci left: 5.654409e-01	ci right 5.849153e-01	k: 5752	n:10000
ARMC8   10000 perm   3 sec   (3706 perm/sec)   p_kst 5.752000e-01   p_cons 9.487000e-01   p_joint 8.819000e-01

Outputting figure to mutsig2_images.part000000000011/ARMC8.6_2134_10000_0.5752_0.9487_0.8819.png
                gene_name: ARMC8
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 17 percent done.
ARID5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.486315e-02	ci left: 7.041236e-01	ci right 7.219521e-01	k: 7131	n:10000
Cons ci ratio: 5.760589e-02	ci left: 3.072893e-01	ci right 3.256177e-01	k: 3164	n:10000
KS ci ratio: 4.033134e-02	ci left: 4.758596e-01	ci right 4.955488e-01	k: 4857	n:10000
ARID5B   10000 perm   2 sec   (4226 perm/sec)   p_kst 4.857000e-01   p_cons 3.164000e-01   p_joint 7.131000e-01

Outputting figure to mutsig2_images.part000000000011/ARID5B.5_3607_10000_0.4857_0.3164_0.7131.png
                gene_name: ARID5B
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 20 percent done.
ARMCX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.227051e-02	ci left: 5.863057e-01	ci right 6.056384e-01	k: 5960	n:10000
Cons ci ratio: 2.210077e-02	ci left: 7.502904e-01	ci right 7.671586e-01	k: 7588	n:10000
KS ci ratio: 3.981027e-02	ci left: 4.823548e-01	ci right 5.020497e-01	k: 4922	n:10000
ARMCX1   10000 perm   2 sec   (4943 perm/sec)   p_kst 4.922000e-01   p_cons 7.588000e-01   p_joint 5.960000e-01

Outputting figure to mutsig2_images.part000000000011/ARMCX1.5_1366_10000_0.4922_0.7588_0.596.png
                gene_name: ARMCX1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 22 percent done.
ARNT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.292085e-02	ci left: 4.449049e-01	ci right 4.645215e-01	k: 4547	n:10000
Cons ci ratio: 1.127694e-01	ci left: 1.016890e-01	ci right 1.139406e-01	k: 1077	n:10000
KS ci ratio: 1.104622e-02	ci left: 9.212101e-01	ci right 9.315399e-01	k: 9265	n:10000
ARNT   10000 perm   3 sec   (3465 perm/sec)   p_kst 9.265000e-01   p_cons 1.077000e-01   p_joint 4.547000e-01

Joint ci ratio: 2.883370e-02	ci left: 4.733042e-01	ci right 4.872016e-01	k: 9605	n:20000
Cons ci ratio: 8.162098e-02	ci left: 9.916397e-02	ci right 1.076517e-01	k: 2067	n:20000
KS ci ratio: 7.863302e-03	ci left: 9.218248e-01	ci right 9.291510e-01	k: 18511	n:20000
ARNT   20000 perm   6 sec   (3489 perm/sec)   p_kst 9.255500e-01   p_cons 1.033500e-01   p_joint 4.802500e-01

Outputting figure to mutsig2_images.part000000000011/ARNT.5_2458_20000_0.92555_0.10335_0.48025.png
                gene_name: ARNT
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 24 percent done.
ARNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.810217e-02	ci left: 3.036194e-01	ci right 3.218898e-01	k: 3127	n:10000
Cons ci ratio: 1.285258e-01	ci left: 7.960546e-02	ci right 9.063764e-02	k: 850	n:10000
KS ci ratio: 3.282282e-02	ci left: 5.780780e-01	ci right 5.974708e-01	k: 5878	n:10000
ARNT2   10000 perm   2 sec   (4061 perm/sec)   p_kst 5.878000e-01   p_cons 8.500000e-02   p_joint 3.127000e-01

Joint ci ratio: 4.443735e-02	ci left: 2.738343e-01	ci right 2.863297e-01	k: 5601	n:20000
Cons ci ratio: 9.105888e-02	ci left: 8.092569e-02	ci right 8.869552e-02	k: 1695	n:20000
KS ci ratio: 2.237250e-02	ci left: 5.986866e-01	ci right 6.122828e-01	k: 12110	n:20000
ARNT2   20000 perm   6 sec   (3595 perm/sec)   p_kst 6.055000e-01   p_cons 8.475000e-02   p_joint 2.800500e-01

Outputting figure to mutsig2_images.part000000000011/ARNT2.5_2230_20000_0.6055_0.08475_0.28005.png
                gene_name: ARNT2
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 26 percent done.
ARPC1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.207343e-02	ci left: 2.761661e-01	ci right 2.939593e-01	k: 2850	n:10000
Cons ci ratio: 1.615502e-01	ci left: 5.109258e-02	ci right 6.016847e-02	k: 555	n:10000
KS ci ratio: 4.187168e-02	ci left: 4.571824e-01	ci right 4.768369e-01	k: 4670	n:10000
ARPC1A   10000 perm   3 sec   (3654 perm/sec)   p_kst 4.670000e-01   p_cons 5.550000e-02   p_joint 2.850000e-01

Joint ci ratio: 5.494754e-02	ci left: 1.972460e-01	ci right 2.084405e-01	k: 4056	n:20000
Cons ci ratio: 1.166432e-01	ci left: 5.032418e-02	ci right 5.660644e-02	k: 1068	n:20000
KS ci ratio: 2.967566e-02	ci left: 4.589670e-01	ci right 4.728429e-01	k: 9318	n:20000
ARPC1A   20000 perm   5 sec   (4054 perm/sec)   p_kst 4.659000e-01   p_cons 5.340000e-02   p_joint 2.028000e-01

Joint ci ratio: 4.812035e-02	ci left: 1.767566e-01	ci right 1.855052e-01	k: 5433	n:30000
Cons ci ratio: 9.509857e-02	ci left: 5.104544e-02	ci right 5.617477e-02	k: 1607	n:30000
KS ci ratio: 2.433812e-02	ci left: 4.580441e-01	ci right 4.693630e-01	k: 13911	n:30000
ARPC1A   30000 perm   7 sec   (4048 perm/sec)   p_kst 4.637000e-01   p_cons 5.356667e-02   p_joint 1.811000e-01

Outputting figure to mutsig2_images.part000000000011/ARPC1A.5_1149_30000_0.4637_0.053567_0.1811.png
                gene_name: ARPC1A
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 28 percent done.
ARSB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.294291e-02	ci left: 3.446209e-01	ci right 3.634642e-01	k: 3540	n:10000
Cons ci ratio: 8.889150e-02	ci left: 1.555149e-01	ci right 1.700821e-01	k: 1627	n:10000
KS ci ratio: 6.022247e-02	ci left: 2.885499e-01	ci right 3.065682e-01	k: 2975	n:10000
ARSB   10000 perm   2 sec   (5208 perm/sec)   p_kst 2.975000e-01   p_cons 1.627000e-01   p_joint 3.540000e-01

Outputting figure to mutsig2_images.part000000000011/ARSB.5_1667_10000_0.2975_0.1627_0.354.png
                gene_name: ARSB
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 30 percent done.
ARSG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.380955e-02	ci left: 2.118147e-01	ci right 2.281487e-01	k: 2199	n:10000
Cons ci ratio: 1.330863e-02	ci left: 8.905689e-01	ci right 9.025990e-01	k: 8967	n:10000
KS ci ratio: 1.134786e-01	ci left: 1.005192e-01	ci right 1.127110e-01	k: 1065	n:10000
ARSG   10000 perm   2 sec   (5142 perm/sec)   p_kst 1.065000e-01   p_cons 8.967000e-01   p_joint 2.199000e-01

Joint ci ratio: 5.164292e-02	ci left: 2.178410e-01	ci right 2.294394e-01	k: 4472	n:20000
Cons ci ratio: 9.047227e-03	ci left: 8.995786e-01	ci right 9.078036e-01	k: 18075	n:20000
KS ci ratio: 7.997037e-02	ci left: 1.029448e-01	ci right 1.115698e-01	k: 2144	n:20000
ARSG   20000 perm   4 sec   (4696 perm/sec)   p_kst 1.072000e-01   p_cons 9.037500e-01   p_joint 2.236000e-01

Outputting figure to mutsig2_images.part000000000011/ARSG.5_1622_20000_0.1072_0.90375_0.2236.png
                gene_name: ARSG
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 33 percent done.
ARSH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.074603e-02	ci left: 7.729656e-01	ci right 7.892703e-01	k: 7812	n:10000
Cons ci ratio: 8.056948e-02	ci left: 1.836317e-01	ci right 1.991485e-01	k: 1913	n:10000
KS ci ratio: 1.755968e-02	ci left: 8.254414e-01	ci right 8.401642e-01	k: 8329	n:10000
ARSH   10000 perm   2 sec   (4244 perm/sec)   p_kst 8.329000e-01   p_cons 1.913000e-01   p_joint 7.812000e-01

Outputting figure to mutsig2_images.part000000000011/ARSH.5_1725_10000_0.8329_0.1913_0.7812.png
                gene_name: ARSH
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 35 percent done.
ARSJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.433543e-02	ci left: 7.129034e-01	ci right 7.305672e-01	k: 7218	n:10000
Cons ci ratio: 4.025071e-02	ci left: 4.768587e-01	ci right 4.965490e-01	k: 4867	n:10000
KS ci ratio: 2.788293e-02	ci left: 6.546456e-01	ci right 6.732588e-01	k: 6640	n:10000
ARSJ   10000 perm   2 sec   (4843 perm/sec)   p_kst 6.640000e-01   p_cons 4.867000e-01   p_joint 7.218000e-01

Outputting figure to mutsig2_images.part000000000011/ARSJ.5_1808_10000_0.664_0.4867_0.7218.png
                gene_name: ARSJ
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 37 percent done.
ART4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.958253e-02	ci left: 1.534534e-01	ci right 1.679449e-01	k: 1606	n:10000
Cons ci ratio: 3.738618e-02	ci left: 5.137554e-01	ci right 5.334308e-01	k: 5236	n:10000
KS ci ratio: 1.096588e-01	ci left: 1.070534e-01	ci right 1.195729e-01	k: 1132	n:10000
ART4   10000 perm   2 sec   (5625 perm/sec)   p_kst 1.132000e-01   p_cons 5.236000e-01   p_joint 1.606000e-01

Joint ci ratio: 5.157609e-02	ci left: 2.182868e-01	ci right 2.298935e-01	k: 4481	n:20000
Cons ci ratio: 2.545294e-02	ci left: 5.355648e-01	ci right 5.494228e-01	k: 10850	n:20000
KS ci ratio: 7.646149e-02	ci left: 1.116914e-01	ci right 1.206206e-01	k: 2322	n:20000
ART4   20000 perm   4 sec   (5076 perm/sec)   p_kst 1.161000e-01   p_cons 5.425000e-01   p_joint 2.240500e-01

Outputting figure to mutsig2_images.part000000000011/ART4.5_957_20000_0.1161_0.5425_0.22405.png
                gene_name: ART4
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 39 percent done.
ARID4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.837355e-02	ci left: 1.921984e-01	ci right 2.079767e-01	k: 2000	n:10000
Cons ci ratio: 1.307207e-01	ci left: 7.708281e-02	ci right 8.796184e-02	k: 824	n:10000
KS ci ratio: 3.992989e-02	ci left: 4.808558e-01	ci right 5.005496e-01	k: 4907	n:10000
ARID4B   10000 perm   2 sec   (4466 perm/sec)   p_kst 4.907000e-01   p_cons 8.240000e-02   p_joint 2.000000e-01

Joint ci ratio: 5.173977e-02	ci left: 2.171971e-01	ci right 2.287835e-01	k: 4459	n:20000
Cons ci ratio: 9.147201e-02	ci left: 8.024030e-02	ci right 8.798112e-02	k: 1681	n:20000
KS ci ratio: 2.834724e-02	ci left: 4.817993e-01	ci right 4.957040e-01	k: 9775	n:20000
ARID4B   20000 perm   5 sec   (4080 perm/sec)   p_kst 4.887500e-01   p_cons 8.405000e-02   p_joint 2.229500e-01

Outputting figure to mutsig2_images.part000000000011/ARID4B.4_4031_20000_0.48875_0.08405_0.22295.png
                gene_name: ARID4B
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 41 percent done.
ARMC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.468637e-02	ci left: 5.510064e-01	ci right 5.705582e-01	k: 5608	n:10000
Cons ci ratio: 2.229388e-02	ci left: 7.470537e-01	ci right 7.639972e-01	k: 7556	n:10000
KS ci ratio: 4.907736e-02	ci left: 3.798263e-01	ci right 3.990382e-01	k: 3894	n:10000
ARMC9   10000 perm   2 sec   (5354 perm/sec)   p_kst 3.894000e-01   p_cons 7.556000e-01   p_joint 5.608000e-01

Outputting figure to mutsig2_images.part000000000011/ARMC9.4_2078_10000_0.3894_0.7556_0.5608.png
                gene_name: ARMC9
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 43 percent done.
ARIH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.561814e-02	ci left: 5.378822e-01	ci right 5.574900e-01	k: 5477	n:10000
Cons ci ratio: 7.270890e-02	ci left: 2.169452e-01	ci right 2.334152e-01	k: 2251	n:10000
KS ci ratio: 4.437769e-02	ci left: 4.284445e-01	ci right 4.479915e-01	k: 4382	n:10000
ARIH1   10000 perm   2 sec   (4249 perm/sec)   p_kst 4.382000e-01   p_cons 2.251000e-01   p_joint 5.477000e-01

Outputting figure to mutsig2_images.part000000000011/ARIH1.3_1730_10000_0.4382_0.2251_0.5477.png
                gene_name: ARIH1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 46 percent done.
ARL13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.693242e-02	ci left: 6.700507e-01	ci right 6.884448e-01	k: 6793	n:10000
Cons ci ratio: 4.393885e-02	ci left: 4.333316e-01	ci right 4.529016e-01	k: 4431	n:10000
KS ci ratio: 1.784894e-02	ci left: 8.207633e-01	ci right 8.356450e-01	k: 8283	n:10000
ARL13B   10000 perm   2 sec   (5063 perm/sec)   p_kst 8.283000e-01   p_cons 4.431000e-01   p_joint 6.793000e-01

Outputting figure to mutsig2_images.part000000000011/ARL13B.3_1327_10000_0.8283_0.4431_0.6793.png
                gene_name: ARL13B
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 48 percent done.
ARMC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.346729e-02	ci left: 1.731041e-01	ci right 1.882824e-01	k: 1806	n:10000
Cons ci ratio: 9.215805e-02	ci left: 1.460943e-01	ci right 1.603084e-01	k: 1531	n:10000
KS ci ratio: 5.969375e-02	ci left: 2.922170e-01	ci right 3.102989e-01	k: 3012	n:10000
ARMC5   10000 perm   2 sec   (4711 perm/sec)   p_kst 3.012000e-01   p_cons 1.531000e-01   p_joint 1.806000e-01

Outputting figure to mutsig2_images.part000000000011/ARMC5.3_3146_10000_0.3012_0.1531_0.1806.png
                gene_name: ARMC5
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 50 percent done.
ARMCX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.751644e-03	ci left: 9.482515e-01	ci right 9.566824e-01	k: 9526	n:10000
Cons ci ratio: 5.136070e-02	ci left: 3.585374e-01	ci right 3.775395e-01	k: 3680	n:10000
KS ci ratio: 4.733738e-02	ci left: 3.970506e-01	ci right 4.164037e-01	k: 4067	n:10000
ARMCX5   10000 perm   2 sec   (5289 perm/sec)   p_kst 4.067000e-01   p_cons 3.680000e-01   p_joint 9.526000e-01

Outputting figure to mutsig2_images.part000000000011/ARMCX5.3_1681_10000_0.4067_0.368_0.9526.png
                gene_name: ARMCX5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 52 percent done.
ARNTL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.178519e-03	ci left: 9.435701e-01	ci right 9.523667e-01	k: 9481	n:10000
Cons ci ratio: 2.585051e-02	ci left: 6.877856e-01	ci right 7.058996e-01	k: 6969	n:10000
KS ci ratio: 1.992472e-02	ci left: 7.866480e-01	ci right 8.025800e-01	k: 7947	n:10000
ARNTL2   10000 perm   2 sec   (5572 perm/sec)   p_kst 7.947000e-01   p_cons 6.969000e-01   p_joint 9.481000e-01

Outputting figure to mutsig2_images.part000000000011/ARNTL2.3_1979_10000_0.7947_0.6969_0.9481.png
                gene_name: ARNTL2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 54 percent done.
ARRDC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.304147e-02	ci left: 8.943634e-01	ci right 9.062022e-01	k: 9004	n:10000
KS ci ratio: 1.685487e-02	ci left: 8.367382e-01	ci right 8.510609e-01	k: 8440	n:10000
ARRDC3   10000 perm   2 sec   (5175 perm/sec)   p_kst 8.440000e-01   p_cons 9.004000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARRDC3.3_1277_10000_0.844_0.9004_1.png
                gene_name: ARRDC3
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
ARSD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.849801e-02	ci left: 2.381767e-01	ci right 2.551711e-01	k: 2466	n:10000
Cons ci ratio: 2.290929e-02	ci left: 7.367410e-01	ci right 7.539159e-01	k: 7454	n:10000
KS ci ratio: 1.131226e-01	ci left: 1.011041e-01	ci right 1.133258e-01	k: 1071	n:10000
ARSD   10000 perm   2 sec   (5404 perm/sec)   p_kst 1.071000e-01   p_cons 7.454000e-01   p_joint 2.466000e-01

Joint ci ratio: 5.966693e-02	ci left: 1.721773e-01	ci right 1.828166e-01	k: 3549	n:20000
Cons ci ratio: 1.640434e-02	ci left: 7.344658e-01	ci right 7.466642e-01	k: 14812	n:20000
KS ci ratio: 8.179755e-02	ci left: 9.877126e-02	ci right 1.072446e-01	k: 2059	n:20000
ARSD   20000 perm   5 sec   (4438 perm/sec)   p_kst 1.029500e-01   p_cons 7.406000e-01   p_joint 1.774500e-01

Outputting figure to mutsig2_images.part000000000011/ARSD.3_1975_20000_0.10295_0.7406_0.17745.png
                gene_name: ARSD
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 59 percent done.
ARSF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.753939e-02	ci left: 3.077853e-01	ci right 3.261214e-01	k: 3169	n:10000
Cons ci ratio: 3.595002e-02	ci left: 5.332753e-01	ci right 5.528996e-01	k: 5431	n:10000
KS ci ratio: 8.912044e-02	ci left: 1.548277e-01	ci right 1.693697e-01	k: 1620	n:10000
ARSF   10000 perm   2 sec   (4557 perm/sec)   p_kst 1.620000e-01   p_cons 5.431000e-01   p_joint 3.169000e-01

Outputting figure to mutsig2_images.part000000000011/ARSF.3_1813_10000_0.162_0.5431_0.3169.png
                gene_name: ARSF
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 61 percent done.
ARSI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.716202e-02	ci left: 5.167575e-01	ci right 5.364270e-01	k: 5266	n:10000
Cons ci ratio: 1.517575e-02	ci left: 8.629443e-01	ci right 8.762395e-01	k: 8697	n:10000
KS ci ratio: 5.363278e-02	ci left: 3.387587e-01	ci right 3.575298e-01	k: 3481	n:10000
ARSI   10000 perm   2 sec   (4385 perm/sec)   p_kst 3.481000e-01   p_cons 8.697000e-01   p_joint 5.266000e-01

Outputting figure to mutsig2_images.part000000000011/ARSI.3_1718_10000_0.3481_0.8697_0.5266.png
                gene_name: ARSI
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 63 percent done.
ARSK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.122849e-02	ci left: 3.597307e-01	ci right 3.787456e-01	k: 3692	n:10000
Cons ci ratio: 4.606649e-02	ci left: 4.102013e-01	ci right 4.296454e-01	k: 4199	n:10000
KS ci ratio: 7.492393e-02	ci left: 2.067847e-01	ci right 2.229817e-01	k: 2148	n:10000
ARSK   10000 perm   2 sec   (5271 perm/sec)   p_kst 2.148000e-01   p_cons 4.199000e-01   p_joint 3.692000e-01

Outputting figure to mutsig2_images.part000000000011/ARSK.3_1643_10000_0.2148_0.4199_0.3692.png
                gene_name: ARSK
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 65 percent done.
ARV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.423247e-02	ci left: 7.146195e-01	ci right 7.322502e-01	k: 7235	n:10000
Cons ci ratio: 9.298919e-03	ci left: 9.422194e-01	ci right 9.511181e-01	k: 9468	n:10000
KS ci ratio: 3.888187e-02	ci left: 4.941505e-01	ci right 5.138471e-01	k: 5040	n:10000
ARV1   10000 perm   2 sec   (5762 perm/sec)   p_kst 5.040000e-01   p_cons 9.468000e-01   p_joint 7.235000e-01

Outputting figure to mutsig2_images.part000000000011/ARV1.3_836_10000_0.504_0.9468_0.7235.png
                gene_name: ARV1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 67 percent done.
ASAH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.935079e-02	ci left: 1.541405e-01	ci right 1.686573e-01	k: 1613	n:10000
Cons ci ratio: 1.876749e-01	ci left: 3.786599e-02	ci right 4.580373e-02	k: 417	n:10000
KS ci ratio: 4.306825e-02	ci left: 4.432085e-01	ci right 4.628189e-01	k: 4530	n:10000
ASAH1   10000 perm   2 sec   (5693 perm/sec)   p_kst 4.530000e-01   p_cons 4.170000e-02   p_joint 1.613000e-01

Joint ci ratio: 7.064720e-02	ci left: 1.286671e-01	ci right 1.381397e-01	k: 2667	n:20000
Cons ci ratio: 1.302882e-01	ci left: 4.047238e-02	ci right 4.616135e-02	k: 865	n:20000
KS ci ratio: 2.918541e-02	ci left: 4.672589e-01	ci right 4.811486e-01	k: 9484	n:20000
ASAH1   20000 perm   4 sec   (5102 perm/sec)   p_kst 4.742000e-01   p_cons 4.325000e-02   p_joint 1.333500e-01

Joint ci ratio: 7.181857e-02	ci left: 8.707987e-02	ci right 9.359972e-02	k: 2709	n:30000
Cons ci ratio: 1.060398e-01	ci left: 4.125192e-02	ci right 4.590366e-02	k: 1306	n:30000
KS ci ratio: 2.394221e-02	ci left: 4.662040e-01	ci right 4.775348e-01	k: 14156	n:30000
ASAH1   30000 perm   7 sec   (4589 perm/sec)   p_kst 4.718667e-01   p_cons 4.353333e-02   p_joint 9.030000e-02

Joint ci ratio: 6.083093e-02	ci left: 9.118183e-02	ci right 9.692726e-02	k: 3761	n:40000
Cons ci ratio: 9.187949e-02	ci left: 4.152174e-02	ci right 4.554487e-02	k: 1740	n:40000
KS ci ratio: 2.073761e-02	ci left: 4.668976e-01	ci right 4.767065e-01	k: 18872	n:40000
ASAH1   40000 perm   9 sec   (4395 perm/sec)   p_kst 4.718000e-01   p_cons 4.350000e-02   p_joint 9.402500e-02

Outputting figure to mutsig2_images.part000000000011/ASAH1.3_1399_40000_0.4718_0.0435_0.094025.png
                gene_name: ASAH1
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.097 

Current progress: 70 percent done.
ARID3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.873724e-02	ci left: 6.409613e-01	ci right 6.597510e-01	k: 6504	n:10000
KS ci ratio: 7.863244e-03	ci left: 9.574375e-01	ci right 9.650907e-01	k: 9614	n:10000
ARID3B   10000 perm   2 sec   (4933 perm/sec)   p_kst 9.614000e-01   p_cons 6.504000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARID3B.2_1715_10000_0.9614_0.6504_1.png
                gene_name: ARID3B
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
ARL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.430777e-02	ci left: 5.564183e-01	ci right 5.759431e-01	k: 5662	n:10000
KS ci ratio: 7.485634e-03	ci left: 9.611050e-01	ci right 9.684210e-01	k: 9649	n:10000
ARL1   10000 perm   2 sec   (5627 perm/sec)   p_kst 9.649000e-01   p_cons 5.662000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000011/ARL1.2_570_10000_0.9649_0.5662_1.png
                gene_name: ARL1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
ARL11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.956342e-02	ci left: 6.278885e-01	ci right 6.468314e-01	k: 6374	n:10000
Cons ci ratio: 1.008422e-02	ci left: 9.330945e-01	ci right 9.426485e-01	k: 9380	n:10000
KS ci ratio: 5.514330e-02	ci left: 3.263440e-01	ci right 3.449518e-01	k: 3356	n:10000
ARL11   10000 perm   2 sec   (6179 perm/sec)   p_kst 3.356000e-01   p_cons 9.380000e-01   p_joint 6.374000e-01

Outputting figure to mutsig2_images.part000000000011/ARL11.2_595_10000_0.3356_0.938_0.6374.png
                gene_name: ARL11
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 76 percent done.
ARL15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.175713e-02	ci left: 5.940342e-01	ci right 6.133054e-01	k: 6037	n:10000
Cons ci ratio: 4.902580e-02	ci left: 3.803239e-01	ci right 3.995402e-01	k: 3899	n:10000
KS ci ratio: 5.070478e-02	ci left: 3.645043e-01	ci right 3.835691e-01	k: 3740	n:10000
ARL15   10000 perm   2 sec   (6355 perm/sec)   p_kst 3.740000e-01   p_cons 3.899000e-01   p_joint 6.037000e-01

Outputting figure to mutsig2_images.part000000000011/ARL15.2_635_10000_0.374_0.3899_0.6037.png
                gene_name: ARL15
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 78 percent done.
ARL5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.118695e-02	ci left: 2.820102e-01	ci right 2.999117e-01	k: 2909	n:10000
Cons ci ratio: 2.339214e-02	ci left: 7.286569e-01	ci right 7.460046e-01	k: 7374	n:10000
KS ci ratio: 2.554752e-01	ci left: 2.005779e-02	ci right 2.602453e-02	k: 229	n:10000
ARL5A   10000 perm   2 sec   (6449 perm/sec)   p_kst 2.290000e-02   p_cons 7.374000e-01   p_joint 2.909000e-01

Joint ci ratio: 4.342898e-02	ci left: 2.831211e-01	ci right 2.957401e-01	k: 5788	n:20000
Cons ci ratio: 1.656232e-02	ci left: 7.307385e-01	ci right 7.429926e-01	k: 14738	n:20000
KS ci ratio: 1.788696e-01	ci left: 2.134943e-02	ci right 2.559067e-02	k: 468	n:20000
ARL5A   20000 perm   4 sec   (5375 perm/sec)   p_kst 2.340000e-02   p_cons 7.369000e-01   p_joint 2.894000e-01

Joint ci ratio: 3.537223e-02	ci left: 2.853002e-01	ci right 2.956071e-01	k: 8713	n:30000
Cons ci ratio: 1.345922e-02	ci left: 7.337224e-01	ci right 7.436980e-01	k: 22162	n:30000
KS ci ratio: 1.452567e-01	ci left: 2.197614e-02	ci right 2.545027e-02	k: 710	n:30000
ARL5A   30000 perm   6 sec   (4780 perm/sec)   p_kst 2.366667e-02   p_cons 7.387333e-01   p_joint 2.904333e-01

Joint ci ratio: 3.054186e-02	ci left: 2.872234e-01	ci right 2.961569e-01	k: 11667	n:40000
Cons ci ratio: 1.166762e-02	ci left: 7.340130e-01	ci right 7.426524e-01	k: 29534	n:40000
KS ci ratio: 1.254580e-01	ci left: 2.232840e-02	ci right 2.534127e-02	k: 952	n:40000
ARL5A   40000 perm   9 sec   (4484 perm/sec)   p_kst 2.380000e-02   p_cons 7.383500e-01   p_joint 2.916750e-01

Joint ci ratio: 2.737577e-02	ci left: 2.868217e-01	ci right 2.948026e-01	k: 14540	n:50000
Cons ci ratio: 1.044585e-02	ci left: 7.341019e-01	ci right 7.418305e-01	k: 36899	n:50000
KS ci ratio: 1.119369e-01	ci left: 2.259837e-02	ci right 2.529729e-02	k: 1196	n:50000
ARL5A   50000 perm   11 sec   (4373 perm/sec)   p_kst 2.392000e-02   p_cons 7.379800e-01   p_joint 2.908000e-01

Joint ci ratio: 2.502513e-02	ci left: 2.866036e-01	ci right 2.938834e-01	k: 17414	n:60000
Cons ci ratio: 9.527007e-03	ci left: 7.347965e-01	ci right 7.418471e-01	k: 44300	n:60000
KS ci ratio: 1.016560e-01	ci left: 2.295263e-02	ci right 2.542703e-02	k: 1450	n:60000
ARL5A   60000 perm   14 sec   (4348 perm/sec)   p_kst 2.416667e-02   p_cons 7.383333e-01   p_joint 2.902333e-01

Joint ci ratio: 2.323603e-02	ci left: 2.856863e-01	ci right 2.924169e-01	k: 20233	n:70000
Cons ci ratio: 8.840301e-03	ci left: 7.341806e-01	ci right 7.407140e-01	k: 51622	n:70000
KS ci ratio: 9.425326e-02	ci left: 2.297653e-02	ci right 2.526315e-02	k: 1687	n:70000
ARL5A   70000 perm   16 sec   (4288 perm/sec)   p_kst 2.410000e-02   p_cons 7.374571e-01   p_joint 2.890429e-01

Outputting figure to mutsig2_images.part000000000011/ARL5A.2_564_70000_0.0241_0.73746_0.28904.png
                gene_name: ARL5A
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.29 

Current progress: 80 percent done.
ARL8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.441376e-02	ci left: 4.280456e-01	ci right 4.475906e-01	k: 4378	n:10000
Cons ci ratio: 1.006938e-01	ci left: 1.249344e-01	ci right 1.382810e-01	k: 1315	n:10000
KS ci ratio: 1.484236e-01	ci left: 6.034192e-02	ci right 7.011322e-02	k: 651	n:10000
ARL8B   10000 perm   2 sec   (5700 perm/sec)   p_kst 6.510000e-02   p_cons 1.315000e-01   p_joint 4.378000e-01

Joint ci ratio: 1.121161e-01	ci left: 5.436186e-02	ci right 6.086750e-02	k: 1151	n:20000
Cons ci ratio: 7.107820e-02	ci left: 1.272883e-01	ci right 1.367189e-01	k: 2639	n:20000
KS ci ratio: 1.046107e-01	ci left: 6.215831e-02	ci right 6.906863e-02	k: 1311	n:20000
ARL8B   20000 perm   4 sec   (5060 perm/sec)   p_kst 6.555000e-02   p_cons 1.319500e-01   p_joint 5.755000e-02

Joint ci ratio: 6.975792e-02	ci left: 9.190154e-02	ci right 9.857708e-02	k: 2856	n:30000
Cons ci ratio: 5.802700e-02	ci left: 1.281888e-01	ci right 1.358826e-01	k: 3960	n:30000
KS ci ratio: 8.546140e-02	ci left: 6.272590e-02	ci right 6.835860e-02	k: 1965	n:30000
ARL8B   30000 perm   6 sec   (4783 perm/sec)   p_kst 6.550000e-02   p_cons 1.320000e-01   p_joint 9.520000e-02

Outputting figure to mutsig2_images.part000000000011/ARL8B.2_589_30000_0.0655_0.132_0.0952.png
                gene_name: ARL8B
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.099 

Current progress: 83 percent done.
ARMCX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.434125e-02	ci left: 8.755155e-01	ci right 8.882611e-01	k: 8820	n:10000
Cons ci ratio: 7.422056e-02	ci left: 2.099406e-01	ci right 2.262240e-01	k: 2180	n:10000
KS ci ratio: 1.016296e-01	ci left: 1.228802e-01	ci right 1.361365e-01	k: 1294	n:10000
ARMCX2   10000 perm   2 sec   (4972 perm/sec)   p_kst 1.294000e-01   p_cons 2.180000e-01   p_joint 8.820000e-01

Joint ci ratio: 2.572848e-02	ci left: 5.302097e-01	ci right 5.440795e-01	k: 10743	n:20000
Cons ci ratio: 5.613020e-02	ci left: 1.905179e-01	ci right 2.015706e-01	k: 3920	n:20000
KS ci ratio: 7.194405e-02	ci left: 1.245805e-01	ci right 1.339276e-01	k: 2584	n:20000
ARMCX2   20000 perm   4 sec   (4645 perm/sec)   p_kst 1.292000e-01   p_cons 1.960000e-01   p_joint 5.371500e-01

Outputting figure to mutsig2_images.part000000000011/ARMCX2.2_1903_20000_0.1292_0.196_0.53715.png
                gene_name: ARMCX2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.54 

Current progress: 85 percent done.
ARPC1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.723193e-02	ci left: 2.450955e-01	ci right 2.622482e-01	k: 2536	n:10000
Cons ci ratio: 1.430962e-01	ci left: 6.478500e-02	ci right 7.486734e-02	k: 697	n:10000
KS ci ratio: 5.604552e-02	ci left: 3.191965e-01	ci right 3.377036e-01	k: 3284	n:10000
ARPC1B   10000 perm   2 sec   (5780 perm/sec)   p_kst 3.284000e-01   p_cons 6.970000e-02   p_joint 2.536000e-01

Joint ci ratio: 2.057872e-02	ci left: 6.379711e-01	ci right 6.512868e-01	k: 12893	n:20000
Cons ci ratio: 1.013818e-01	ci left: 6.601338e-02	ci right 7.311238e-02	k: 1390	n:20000
KS ci ratio: 3.895725e-02	ci left: 3.295028e-01	ci right 3.426449e-01	k: 6721	n:20000
ARPC1B   20000 perm   4 sec   (5258 perm/sec)   p_kst 3.360500e-01   p_cons 6.950000e-02   p_joint 6.446500e-01

Joint ci ratio: 1.675566e-02	ci left: 6.404912e-01	ci right 6.513472e-01	k: 19378	n:30000
Cons ci ratio: 8.291733e-02	ci left: 6.645133e-02	ci right 7.223241e-02	k: 2079	n:30000
KS ci ratio: 3.182747e-02	ci left: 3.304553e-01	ci right 3.411765e-01	k: 10074	n:30000
ARPC1B   30000 perm   6 sec   (4961 perm/sec)   p_kst 3.358000e-01   p_cons 6.930000e-02   p_joint 6.459333e-01

Outputting figure to mutsig2_images.part000000000011/ARPC1B.2_1155_30000_0.3358_0.0693_0.64593.png
                gene_name: ARPC1B
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 87 percent done.
ARPC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.107936e-02	ci left: 7.673949e-01	ci right 7.838442e-01	k: 7757	n:10000
Cons ci ratio: 3.386992e-02	ci left: 5.627338e-01	ci right 5.822240e-01	k: 5725	n:10000
KS ci ratio: 6.516600e-02	ci left: 2.569630e-01	ci right 2.743737e-01	k: 2656	n:10000
ARPC2   10000 perm   2 sec   (6186 perm/sec)   p_kst 2.656000e-01   p_cons 5.725000e-01   p_joint 7.757000e-01

Outputting figure to mutsig2_images.part000000000011/ARPC2.2_943_10000_0.2656_0.5725_0.7757.png
                gene_name: ARPC2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 89 percent done.
ARPC5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.185010e-02	ci left: 5.926288e-01	ci right 6.119116e-01	k: 6023	n:10000
Cons ci ratio: 4.481289e-02	ci left: 4.236581e-01	ci right 4.431807e-01	k: 4334	n:10000
KS ci ratio: 1.933710e-02	ci left: 7.963859e-01	ci right 8.120365e-01	k: 8043	n:10000
ARPC5L   10000 perm   1 sec   (6806 perm/sec)   p_kst 8.043000e-01   p_cons 4.334000e-01   p_joint 6.023000e-01

Outputting figure to mutsig2_images.part000000000011/ARPC5L.2_478_10000_0.8043_0.4334_0.6023.png
                gene_name: ARPC5L
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 91 percent done.
ARSE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.871592e-02	ci left: 2.991568e-01	ci right 3.173550e-01	k: 3082	n:10000
Cons ci ratio: 3.563971e-02	ci left: 5.375817e-01	ci right 5.571907e-01	k: 5474	n:10000
KS ci ratio: 1.237387e-01	ci left: 8.552985e-02	ci right 9.690958e-02	k: 911	n:10000
ARSE   10000 perm   2 sec   (5458 perm/sec)   p_kst 9.110000e-02   p_cons 5.474000e-01   p_joint 3.082000e-01

Joint ci ratio: 2.918833e-02	ci left: 4.672089e-01	ci right 4.810986e-01	k: 9483	n:20000
Cons ci ratio: 2.550682e-02	ci left: 5.345137e-01	ci right 5.483742e-01	k: 10829	n:20000
KS ci ratio: 8.923154e-02	ci left: 8.405991e-02	ci right 9.196034e-02	k: 1759	n:20000
ARSE   20000 perm   4 sec   (4721 perm/sec)   p_kst 8.795000e-02   p_cons 5.414500e-01   p_joint 4.741500e-01

Outputting figure to mutsig2_images.part000000000011/ARSE.2_1810_20000_0.08795_0.54145_0.47415.png
                gene_name: ARSE
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 93 percent done.
ART1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.958397e-02	ci left: 2.324462e-01	ci right 2.493050e-01	k: 2408	n:10000
Cons ci ratio: 8.886211e-03	ci left: 9.467940e-01	ci right 9.553408e-01	k: 9512	n:10000
KS ci ratio: 1.793285e-01	ci left: 4.149837e-02	ci right 4.976893e-02	k: 455	n:10000
ART1   10000 perm   2 sec   (6184 perm/sec)   p_kst 4.550000e-02   p_cons 9.512000e-01   p_joint 2.408000e-01

Joint ci ratio: 3.203135e-02	ci left: 4.212783e-01	ci right 4.350426e-01	k: 8563	n:20000
Cons ci ratio: 6.715121e-03	ci left: 9.413394e-01	ci right 9.477306e-01	k: 18892	n:20000
KS ci ratio: 1.283634e-01	ci left: 4.168362e-02	ci right 4.744973e-02	k: 890	n:20000
ART1   20000 perm   4 sec   (5034 perm/sec)   p_kst 4.450000e-02   p_cons 9.446000e-01   p_joint 4.281500e-01

Joint ci ratio: 2.529748e-02	ci left: 4.388993e-01	ci right 4.501782e-01	k: 13336	n:30000
Cons ci ratio: 4.961724e-03	ci left: 9.517392e-01	ci right 9.565057e-01	k: 28625	n:30000
KS ci ratio: 1.065953e-01	ci left: 4.082963e-02	ci right 4.545937e-02	k: 1293	n:30000
ART1   30000 perm   7 sec   (4549 perm/sec)   p_kst 4.310000e-02   p_cons 9.541667e-01   p_joint 4.445333e-01

Joint ci ratio: 1.238872e-02	ci left: 7.100710e-01	ci right 7.189478e-01	k: 28581	n:40000
Cons ci ratio: 4.295024e-03	ci left: 9.521056e-01	ci right 9.562281e-01	k: 38168	n:40000
KS ci ratio: 9.243597e-02	ci left: 4.103278e-02	ci right 4.503391e-02	k: 1720	n:40000
ART1   40000 perm   9 sec   (4516 perm/sec)   p_kst 4.300000e-02   p_cons 9.542000e-01   p_joint 7.145250e-01

Outputting figure to mutsig2_images.part000000000011/ART1.2_1000_40000_0.043_0.9542_0.71452.png
                gene_name: ART1
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 96 percent done.
ART3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.267398e-02	ci left: 7.406834e-01	ci right 7.577712e-01	k: 7493	n:10000
Cons ci ratio: 3.232413e-02	ci left: 5.855029e-01	ci right 6.048417e-01	k: 5952	n:10000
KS ci ratio: 4.307694e-02	ci left: 4.431087e-01	ci right 4.627188e-01	k: 4529	n:10000
ART3   10000 perm   2 sec   (5679 perm/sec)   p_kst 4.529000e-01   p_cons 5.952000e-01   p_joint 7.493000e-01

Outputting figure to mutsig2_images.part000000000011/ART3.2_1214_10000_0.4529_0.5952_0.7493.png
                gene_name: ART3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 98 percent done.
ART5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.241139e-02	ci left: 5.841983e-01	ci right 6.035469e-01	k: 5939	n:10000
Cons ci ratio: 4.580278e-02	ci left: 4.129917e-01	ci right 4.324533e-01	k: 4227	n:10000
KS ci ratio: 2.405090e-02	ci left: 7.176482e-01	ci right 7.352197e-01	k: 7265	n:10000
ART5   10000 perm   2 sec   (5963 perm/sec)   p_kst 7.265000e-01   p_cons 4.227000e-01   p_joint 5.939000e-01

Outputting figure to mutsig2_images.part000000000011/ART5.2_892_10000_0.7265_0.4227_0.5939.png
                gene_name: ART5
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000011
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 11 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1418>
Subject: Job 9893826: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1418>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000012> was used as the working directory.
Started at Fri Oct  5 23:53:22 2012
Results reported at Sat Oct  6 00:08:18 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000012.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000012.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 12  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000012.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    979.23 sec.
    Max Memory :      3687 MB
    Max Swap   :      6026 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
12
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 12
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 12: processing genes 993 - 1082
Calculating significance of each gene.
Using projection method.
993	ASAH2	4.247702e-01
994	ASAM	7.681537e-01
In gene ASAP1 the following bins exceed PROBCAP:
    COAD-AA-3538	categ 6	N = 3506    n = 1	mu =   1.03e-07
995	ASAP1	6.317065e-01
996	ASAP2	9.148004e-01
997	ASAP3	9.924141e-01
998	ASB1	4.702818e-01
999	ASB10	1
1000/18030 1000	ASB11	1
1001	ASB12	8.434699e-01
1002	ASB13	1
1003	ASB14	6.146358e-01
1004	ASB15	7.328503e-01
1005	ASB16	6.684048e-01
1006	ASB17	4.081543e-01
1007	ASB18	2.052821e-01
1008	ASB2	8.115639e-01
1009	ASB3	4.038577e-01
1010	ASB4	8.184519e-01
1011	ASB5	3.313273e-03
1012	ASB6	9.358314e-01
1013	ASB7	4.365939e-01
1014	ASB8	5.207604e-01
1015	ASB9	3.931090e-01
1016	ASCC1	1
In gene ASCC2 the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 2350    n = 1	mu =   7.59e-07
1017	ASCC2	7.740683e-01
1018	ASCC3	6.168768e-03
1019	ASCL1	6.692597e-01
1020	ASCL3	3.388411e-01
1021	ASCL4	5.743849e-01
1022	ASF1A	1.538238e-01
1023	ASF1B	3.027167e-01
1024	ASGR1	4.853218e-01
1025	ASGR2	6.217757e-01
1026	ASH1L	2.601464e-01
1027	ASH2L	6.745461e-01
1028	ASIP	1
1029	ASL	5.304390e-01
1030	ASNA1	1
1031	ASNS	7.718548e-01
1032	ASNSD1	3.193484e-01
1033	ASPA	1.202155e-01
1034	ASPDH	4.999961e-01
1035	ASPG	7.943043e-01
1036	ASPH	8.535632e-01
1037	ASPHD1	9.159371e-01
1038	ASPHD2	5.515603e-01
1039	ASPM	3.429239e-01
1040	ASPN	1
1041	ASPRV1	3.131175e-01
1042	ASPSCR1	6.872529e-01
1043	ASRGL1	1
1044	ASS1	7.338559e-01
1045	ASTE1	9.954191e-02
1046	ASTL	7.731260e-02
1047	ASTN1	1.870833e-03
1048	ASTN2	1.380872e-02
1049	ASXL1	1.114795e-01
1050	ASXL2	7.857966e-01
1051	ASXL3	9.361129e-01
1052	ASZ1	2.444798e-01
1053	ATAD1	5.533239e-01
1054	ATAD2	4.225322e-01
1055	ATAD2B	5.712426e-01
1056	ATAD3A	9.140037e-01
1057	ATAD3B	7.919575e-01
1058	ATAD5	4.863121e-01
1059	ATCAY	4.288222e-01
1060	ATE1	6.927055e-01
1061	ATF1	2.383736e-01
1062	ATF2	9.303275e-01
1063	ATF3	5.217893e-01
1064	ATF4	5.795140e-01
1065	ATF5	1
1066	ATF6	6.617895e-02
1067	ATF6B	8.867089e-01
1068	ATF7	8.885978e-01
1069	ATF7IP	5.136835e-01
1070	ATF7IP2	4.272895e-01
1071	ATG10	6.502400e-01
1072	ATG12	1
1073	ATG16L1	5.109119e-01
1074	ATG16L2	9.033077e-01
1075	ATG2A	8.475710e-01
1076	ATG2B	5.148501e-01
1077	ATG3	7.446568e-01
1078	ATG4A	6.000575e-01
1079	ATG4B	1
1080	ATG4C	1.029901e-01
1081	ATG4D	2.355346e-01
1082	ATG5	9.776659e-02
Done

Running MutSig 2:
Scatter job 12: processing genes 993 - 1082
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ASPM
Processing conservation and coverage...
94% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.113278e-01	ci left: 1.041267e-01	ci right 1.165013e-01	k: 1102	n:10000
Cons ci ratio: 2.845979e-02	ci left: 6.453876e-01	ci right 6.641221e-01	k: 6548	n:10000
KS ci ratio: 2.184266e-01	ci left: 2.778487e-02	ci right 3.469176e-02	k: 311	n:10000
ASPM   10000 perm   5 sec   (2010 perm/sec)   p_kst 3.110000e-02   p_cons 6.548000e-01   p_joint 1.102000e-01

Joint ci ratio: 9.186014e-02	ci left: 7.960393e-02	ci right 8.731768e-02	k: 1668	n:20000
Cons ci ratio: 1.994940e-02	ci left: 6.521313e-01	ci right 6.653225e-01	k: 13175	n:20000
KS ci ratio: 1.576109e-01	ci left: 2.763127e-02	ci right 3.240667e-02	k: 599	n:20000
ASPM   20000 perm   15 sec   (1346 perm/sec)   p_kst 2.995000e-02   p_cons 6.587500e-01   p_joint 8.340000e-02

Joint ci ratio: 8.139290e-02	ci left: 6.883823e-02	ci right 7.471169e-02	k: 2152	n:30000
Cons ci ratio: 1.673247e-02	ci left: 6.411266e-01	ci right 6.519783e-01	k: 19397	n:30000
KS ci ratio: 1.278139e-01	ci left: 2.845385e-02	ci right 3.237112e-02	k: 911	n:30000
ASPM   30000 perm   20 sec   (1501 perm/sec)   p_kst 3.036667e-02   p_cons 6.465667e-01   p_joint 7.173333e-02

Joint ci ratio: 7.315461e-02	ci left: 6.451968e-02	ci right 6.944341e-02	k: 2678	n:40000
Cons ci ratio: 1.488921e-02	ci left: 6.293324e-01	ci right 6.387981e-01	k: 25363	n:40000
KS ci ratio: 1.116410e-01	ci left: 2.822835e-02	ci right 3.159035e-02	k: 1195	n:40000
ASPM   40000 perm   25 sec   (1593 perm/sec)   p_kst 2.987500e-02   p_cons 6.340750e-01   p_joint 6.695000e-02

Joint ci ratio: 6.079772e-02	ci left: 7.442151e-02	ci right 7.910777e-02	k: 3837	n:50000
Cons ci ratio: 1.332872e-02	ci left: 6.294393e-01	ci right 6.379052e-01	k: 31684	n:50000
KS ci ratio: 9.947834e-02	ci left: 2.861968e-02	ci right 3.163520e-02	k: 1505	n:50000
ASPM   50000 perm   30 sec   (1650 perm/sec)   p_kst 3.010000e-02   p_cons 6.336800e-01   p_joint 7.674000e-02

Outputting figure to mutsig2_images.part000000000012/ASPM.25_10546_50000_0.0301_0.63368_0.07674.png
                gene_name: ASPM
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.079 

Current progress: 2 percent done.
ASH1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.712888e-03	ci left: 9.486681e-01	ci right 9.570656e-01	k: 9530	n:10000
Cons ci ratio: 1.393192e-02	ci left: 8.815532e-01	ci right 8.940199e-01	k: 8879	n:10000
KS ci ratio: 1.367889e-02	ci left: 8.852399e-01	ci right 8.975311e-01	k: 8915	n:10000
ASH1L   10000 perm   5 sec   (2180 perm/sec)   p_kst 8.915000e-01   p_cons 8.879000e-01   p_joint 9.530000e-01

Outputting figure to mutsig2_images.part000000000012/ASH1L.24_9003_10000_0.8915_0.8879_0.953.png
                gene_name: ASH1L
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 4 percent done.
ASCC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.847911e-02	ci left: 8.104985e-01	ci right 8.257157e-01	k: 8182	n:10000
Cons ci ratio: 4.092516e-02	ci left: 4.685668e-01	ci right 4.882458e-01	k: 4784	n:10000
KS ci ratio: 1.297599e-02	ci left: 8.952868e-01	ci right 9.070783e-01	k: 9013	n:10000
ASCC3   10000 perm   3 sec   (3049 perm/sec)   p_kst 9.013000e-01   p_cons 4.784000e-01   p_joint 8.182000e-01

Outputting figure to mutsig2_images.part000000000012/ASCC3.19_6872_10000_0.9013_0.4784_0.8182.png
                gene_name: ASCC3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 5 percent done.
ASTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.094976e-02	ci left: 4.682672e-01	ci right 4.879456e-01	k: 4781	n:10000
Cons ci ratio: 2.795794e-02	ci left: 6.534378e-01	ci right 6.720673e-01	k: 6628	n:10000
KS ci ratio: 5.126149e-02	ci left: 3.594324e-01	ci right 3.784440e-01	k: 3689	n:10000
ASTN1   10000 perm   2 sec   (4293 perm/sec)   p_kst 3.689000e-01   p_cons 6.628000e-01   p_joint 4.781000e-01

Outputting figure to mutsig2_images.part000000000012/ASTN1.16_3981_10000_0.3689_0.6628_0.4781.png
                gene_name: ASTN1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 7 percent done.
ASTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.413489e-01	ci left: 2.259324e-02	ci right 2.888717e-02	k: 256	n:10000
Cons ci ratio: 5.704172e-01	ci left: 3.369688e-03	ci right 6.131041e-03	k: 46	n:10000
KS ci ratio: 6.860876e-02	ci left: 2.375838e-01	ci right 2.545644e-01	k: 2460	n:10000
ASTN2   10000 perm   2 sec   (4168 perm/sec)   p_kst 2.460000e-01   p_cons 4.600000e-03   p_joint 2.560000e-02

Joint ci ratio: 2.434210e-01	ci left: 1.124125e-02	ci right 1.440275e-02	k: 255	n:20000
Cons ci ratio: 4.293715e-01	ci left: 3.262140e-03	ci right 5.086662e-03	k: 82	n:20000
KS ci ratio: 4.842280e-02	ci left: 2.407872e-01	ci right 2.527865e-01	k: 4935	n:20000
ASTN2   20000 perm   5 sec   (3721 perm/sec)   p_kst 2.467500e-01   p_cons 4.100000e-03   p_joint 1.275000e-02

Joint ci ratio: 2.142673e-01	ci left: 9.850602e-03	ci right 1.224550e-02	k: 330	n:30000
Cons ci ratio: 3.837144e-01	ci left: 2.803236e-03	ci right 4.162393e-03	k: 103	n:30000
KS ci ratio: 3.933965e-02	ci left: 2.437502e-01	ci right 2.535651e-01	k: 7459	n:30000
ASTN2   30000 perm   8 sec   (3577 perm/sec)   p_kst 2.486333e-01   p_cons 3.433333e-03   p_joint 1.100000e-02

Joint ci ratio: 2.155539e-01	ci left: 7.315922e-03	ci right 9.106577e-03	k: 327	n:40000
Cons ci ratio: 3.355611e-01	ci left: 2.830454e-03	ci right 3.993482e-03	k: 135	n:40000
KS ci ratio: 3.380158e-02	ci left: 2.473532e-01	ci right 2.558829e-01	k: 10064	n:40000
ASTN2   40000 perm   11 sec   (3482 perm/sec)   p_kst 2.516000e-01   p_cons 3.375000e-03   p_joint 8.175000e-03

Joint ci ratio: 2.115527e-01	ci left: 6.098414e-03	ci right 7.559726e-03	k: 340	n:50000
Cons ci ratio: 3.028287e-01	ci left: 2.834815e-03	ci right 3.864181e-03	k: 166	n:50000
KS ci ratio: 3.016780e-02	ci left: 2.486168e-01	ci right 2.562519e-01	k: 12621	n:50000
ASTN2   50000 perm   15 sec   (3402 perm/sec)   p_kst 2.524200e-01   p_cons 3.320000e-03   p_joint 6.800000e-03

Joint ci ratio: 1.740486e-01	ci left: 7.653365e-03	ci right 9.128114e-03	k: 502	n:60000
Cons ci ratio: 2.681146e-01	ci left: 3.074367e-03	ci right 4.041300e-03	k: 212	n:60000
KS ci ratio: 2.773453e-02	ci left: 2.463068e-01	ci right 2.532507e-01	k: 14986	n:60000
ASTN2   60000 perm   18 sec   (3332 perm/sec)   p_kst 2.497667e-01   p_cons 3.533333e-03   p_joint 8.366667e-03

Joint ci ratio: 1.762844e-01	ci left: 6.395741e-03	ci right 7.645649e-03	k: 490	n:70000
Cons ci ratio: 2.536617e-01	ci left: 2.968953e-03	ci right 3.844438e-03	k: 237	n:70000
KS ci ratio: 2.575065e-02	ci left: 2.455012e-01	ci right 2.519197e-01	k: 17409	n:70000
ASTN2   70000 perm   21 sec   (3262 perm/sec)   p_kst 2.487000e-01   p_cons 3.385714e-03   p_joint 7.000000e-03

Joint ci ratio: 1.687490e-01	ci left: 6.134420e-03	ci right 7.276795e-03	k: 535	n:80000
Cons ci ratio: 2.368426e-01	ci left: 3.008481e-03	ci right 3.828183e-03	k: 272	n:80000
KS ci ratio: 2.411104e-02	ci left: 2.453465e-01	ci right 2.513467e-01	k: 19867	n:80000
ASTN2   80000 perm   25 sec   (3152 perm/sec)   p_kst 2.483375e-01   p_cons 3.400000e-03   p_joint 6.687500e-03

Joint ci ratio: 1.385879e-01	ci left: 8.200150e-03	ci right 9.431822e-03	k: 792	n:90000
Cons ci ratio: 2.226166e-01	ci left: 3.051211e-03	ci right 3.825783e-03	k: 308	n:90000
KS ci ratio: 2.268451e-02	ci left: 2.462991e-01	ci right 2.519615e-01	k: 22421	n:90000
ASTN2   90000 perm   30 sec   (2996 perm/sec)   p_kst 2.491222e-01   p_cons 3.422222e-03   p_joint 8.800000e-03

Joint ci ratio: 1.523132e-01	ci left: 6.078629e-03	ci right 7.090310e-03	k: 657	n:100000
Cons ci ratio: 2.134929e-01	ci left: 3.001340e-03	ci right 3.727937e-03	k: 335	n:100000
KS ci ratio: 2.155807e-02	ci left: 2.457940e-01	ci right 2.511606e-01	k: 24847	n:100000
ASTN2   100000 perm   34 sec   (2925 perm/sec)   p_kst 2.484700e-01   p_cons 3.350000e-03   p_joint 6.570000e-03

Joint ci ratio: 1.147364e-01	ci left: 9.897197e-03	ci right 1.111064e-02	k: 1154	n:110000
Cons ci ratio: 2.023526e-01	ci left: 3.055978e-03	ci right 3.752429e-03	k: 373	n:110000
KS ci ratio: 2.052823e-02	ci left: 2.464013e-01	ci right 2.515210e-01	k: 27385	n:110000
ASTN2   110000 perm   38 sec   (2883 perm/sec)   p_kst 2.489545e-01   p_cons 3.390909e-03   p_joint 1.049091e-02

Joint ci ratio: 1.059280e-01	ci left: 1.068528e-02	ci right 1.188851e-02	k: 1353	n:120000
Cons ci ratio: 1.935001e-01	ci left: 3.078534e-03	ci right 3.745820e-03	k: 408	n:120000
KS ci ratio: 1.966246e-02	ci left: 2.463559e-01	ci right 2.512562e-01	k: 29856	n:120000
ASTN2   120000 perm   42 sec   (2840 perm/sec)   p_kst 2.488000e-01   p_cons 3.400000e-03   p_joint 1.127500e-02

Joint ci ratio: 1.042757e-01	ci left: 1.019277e-02	ci right 1.132152e-02	k: 1397	n:130000
Cons ci ratio: 1.863491e-01	ci left: 3.076176e-03	ci right 3.715522e-03	k: 440	n:130000
KS ci ratio: 1.891096e-02	ci left: 2.460607e-01	ci right 2.507660e-01	k: 32293	n:130000
ASTN2   130000 perm   47 sec   (2777 perm/sec)   p_kst 2.484077e-01   p_cons 3.384615e-03   p_joint 1.074615e-02

Joint ci ratio: 1.106461e-01	ci left: 8.393811e-03	ci right 9.383833e-03	k: 1243	n:140000
Cons ci ratio: 1.807047e-01	ci left: 3.047258e-03	ci right 3.659311e-03	k: 468	n:140000
KS ci ratio: 1.824999e-02	ci left: 2.455971e-01	ci right 2.501276e-01	k: 34700	n:140000
ASTN2   140000 perm   51 sec   (2737 perm/sec)   p_kst 2.478571e-01   p_cons 3.342857e-03   p_joint 8.878571e-03

Joint ci ratio: 1.072545e-01	ci left: 8.353014e-03	ci right 9.306117e-03	k: 1323	n:150000
Cons ci ratio: 1.731144e-01	ci left: 3.111722e-03	ci right 3.707728e-03	k: 510	n:150000
KS ci ratio: 1.763358e-02	ci left: 2.456234e-01	ci right 2.499997e-01	k: 37171	n:150000
ASTN2   150000 perm   56 sec   (2691 perm/sec)   p_kst 2.478067e-01   p_cons 3.400000e-03   p_joint 8.820000e-03

Joint ci ratio: 1.047606e-01	ci left: 8.220315e-03	ci right 9.135122e-03	k: 1387	n:160000
Cons ci ratio: 1.673198e-01	ci left: 3.132658e-03	ci right 3.710567e-03	k: 546	n:160000
KS ci ratio: 1.706767e-02	ci left: 2.458231e-01	ci right 2.500610e-01	k: 39670	n:160000
ASTN2   160000 perm   60 sec   (2665 perm/sec)   p_kst 2.479375e-01   p_cons 3.412500e-03   p_joint 8.668750e-03

Joint ci ratio: 1.051318e-01	ci left: 7.685104e-03	ci right 8.543563e-03	k: 1378	n:170000
Cons ci ratio: 1.631981e-01	ci left: 3.106275e-03	ci right 3.663814e-03	k: 574	n:170000
KS ci ratio: 1.656158e-02	ci left: 2.458077e-01	ci right 2.499185e-01	k: 42136	n:170000
ASTN2   170000 perm   64 sec   (2642 perm/sec)   p_kst 2.478588e-01   p_cons 3.376471e-03   p_joint 8.105882e-03

Joint ci ratio: 9.208705e-02	ci left: 9.507472e-03	ci right 1.043064e-02	k: 1793	n:180000
Cons ci ratio: 1.581866e-01	ci left: 3.130998e-03	ci right 3.674079e-03	k: 611	n:180000
KS ci ratio: 1.610616e-02	ci left: 2.456074e-01	ci right 2.496008e-01	k: 44568	n:180000
ASTN2   180000 perm   69 sec   (2595 perm/sec)   p_kst 2.476000e-01   p_cons 3.394444e-03   p_joint 9.961111e-03

Joint ci ratio: 9.164843e-02	ci left: 9.099551e-03	ci right 9.978669e-03	k: 1811	n:190000
Cons ci ratio: 1.539675e-01	ci left: 3.138168e-03	ci right 3.666636e-03	k: 645	n:190000
KS ci ratio: 1.569678e-02	ci left: 2.451828e-01	ci right 2.490670e-01	k: 46953	n:190000
ASTN2   190000 perm   74 sec   (2569 perm/sec)   p_kst 2.471211e-01   p_cons 3.394737e-03   p_joint 9.531579e-03

Joint ci ratio: 9.069070e-02	ci left: 8.835072e-03	ci right 9.679243e-03	k: 1850	n:200000
Cons ci ratio: 1.513019e-01	ci left: 3.091862e-03	ci right 3.602700e-03	k: 668	n:200000
KS ci ratio: 1.530123e-02	ci left: 2.451859e-01	ci right 2.489714e-01	k: 49415	n:200000
ASTN2   200000 perm   78 sec   (2549 perm/sec)   p_kst 2.470750e-01   p_cons 3.340000e-03   p_joint 9.250000e-03

Joint ci ratio: 8.949924e-02	ci left: 8.647047e-03	ci right 9.461829e-03	k: 1900	n:210000
Cons ci ratio: 1.475976e-01	ci left: 3.100482e-03	ci right 3.599096e-03	k: 702	n:210000
KS ci ratio: 1.492059e-02	ci left: 2.455271e-01	ci right 2.492227e-01	k: 51948	n:210000
ASTN2   210000 perm   83 sec   (2522 perm/sec)   p_kst 2.473714e-01   p_cons 3.342857e-03   p_joint 9.047619e-03

Joint ci ratio: 8.490774e-02	ci left: 9.187846e-03	ci right 1.000697e-02	k: 2110	n:220000
Cons ci ratio: 1.438592e-01	ci left: 3.121604e-03	ci right 3.609808e-03	k: 739	n:220000
KS ci ratio: 1.457466e-02	ci left: 2.456433e-01	ci right 2.492543e-01	k: 54438	n:220000
ASTN2   220000 perm   88 sec   (2486 perm/sec)   p_kst 2.474455e-01   p_cons 3.359091e-03   p_joint 9.590909e-03

Joint ci ratio: 8.350018e-02	ci left: 9.094807e-03	ci right 9.891541e-03	k: 2182	n:230000
Cons ci ratio: 1.407552e-01	ci left: 3.124252e-03	ci right 3.601443e-03	k: 772	n:230000
KS ci ratio: 1.425388e-02	ci left: 2.456939e-01	ci right 2.492255e-01	k: 56915	n:230000
ASTN2   230000 perm   93 sec   (2464 perm/sec)   p_kst 2.474565e-01   p_cons 3.356522e-03   p_joint 9.486957e-03

Joint ci ratio: 8.827216e-02	ci left: 7.790088e-03	ci right 8.513533e-03	k: 1955	n:240000
Cons ci ratio: 1.379297e-01	ci left: 3.122760e-03	ci right 3.589361e-03	k: 804	n:240000
KS ci ratio: 1.394325e-02	ci left: 2.460113e-01	ci right 2.494697e-01	k: 59457	n:240000
ASTN2   240000 perm   98 sec   (2440 perm/sec)   p_kst 2.477375e-01   p_cons 3.350000e-03   p_joint 8.145833e-03

Joint ci ratio: 8.701774e-02	ci left: 7.701471e-03	ci right 8.406006e-03	k: 2012	n:250000
Cons ci ratio: 1.349446e-01	ci left: 3.136936e-03	ci right 3.594697e-03	k: 840	n:250000
KS ci ratio: 1.366997e-02	ci left: 2.458172e-01	ci right 2.492046e-01	k: 61877	n:250000
ASTN2   250000 perm   103 sec   (2420 perm/sec)   p_kst 2.475080e-01   p_cons 3.360000e-03   p_joint 8.048000e-03

Joint ci ratio: 8.727195e-02	ci left: 7.363819e-03	ci right 8.039532e-03	k: 2001	n:260000
Cons ci ratio: 1.320698e-01	ci left: 3.153841e-03	ci right 3.603496e-03	k: 877	n:260000
KS ci ratio: 1.339913e-02	ci left: 2.459994e-01	ci right 2.493216e-01	k: 64391	n:260000
ASTN2   260000 perm   108 sec   (2399 perm/sec)   p_kst 2.476577e-01   p_cons 3.373077e-03   p_joint 7.696154e-03

Joint ci ratio: 8.715302e-02	ci left: 7.112783e-03	ci right 7.764524e-03	k: 2007	n:270000
Cons ci ratio: 1.299424e-01	ci left: 3.140918e-03	ci right 3.580960e-03	k: 906	n:270000
KS ci ratio: 1.315161e-02	ci left: 2.459470e-01	ci right 2.492066e-01	k: 66845	n:270000
ASTN2   270000 perm   114 sec   (2375 perm/sec)   p_kst 2.475741e-01   p_cons 3.355556e-03   p_joint 7.433333e-03

Joint ci ratio: 8.092355e-02	ci left: 7.974265e-03	ci right 8.650257e-03	k: 2326	n:280000
Cons ci ratio: 1.270325e-01	ci left: 3.173925e-03	ci right 3.607883e-03	k: 948	n:280000
KS ci ratio: 1.291187e-02	ci left: 2.460556e-01	ci right 2.492568e-01	k: 69343	n:280000
ASTN2   280000 perm   120 sec   (2333 perm/sec)   p_kst 2.476536e-01   p_cons 3.385714e-03   p_joint 8.307143e-03

Joint ci ratio: 8.065618e-02	ci left: 7.753312e-03	ci right 8.408300e-03	k: 2342	n:290000
Cons ci ratio: 1.250719e-01	ci left: 3.164664e-03	ci right 3.590183e-03	k: 978	n:290000
KS ci ratio: 1.269712e-02	ci left: 2.457959e-01	ci right 2.489402e-01	k: 71736	n:290000
ASTN2   290000 perm   126 sec   (2298 perm/sec)   p_kst 2.473655e-01   p_cons 3.372414e-03   p_joint 8.075862e-03

Joint ci ratio: 7.942936e-02	ci left: 7.733328e-03	ci right 8.376230e-03	k: 2415	n:300000
Cons ci ratio: 1.229550e-01	ci left: 3.168993e-03	ci right 3.587358e-03	k: 1012	n:300000
KS ci ratio: 1.248837e-02	ci left: 2.456837e-01	ci right 2.487745e-01	k: 74168	n:300000
ASTN2   300000 perm   132 sec   (2276 perm/sec)   p_kst 2.472267e-01   p_cons 3.373333e-03   p_joint 8.050000e-03

Joint ci ratio: 7.336318e-02	ci left: 8.790878e-03	ci right 9.463508e-03	k: 2828	n:310000
Cons ci ratio: 1.211163e-01	ci left: 3.163714e-03	ci right 3.574688e-03	k: 1043	n:310000
KS ci ratio: 1.228117e-02	ci left: 2.458335e-01	ci right 2.488745e-01	k: 76679	n:310000
ASTN2   310000 perm   138 sec   (2251 perm/sec)   p_kst 2.473516e-01   p_cons 3.364516e-03   p_joint 9.122581e-03

Joint ci ratio: 7.249972e-02	ci left: 8.724776e-03	ci right 9.384160e-03	k: 2896	n:320000
Cons ci ratio: 1.191909e-01	ci left: 3.167905e-03	ci right 3.572421e-03	k: 1077	n:320000
KS ci ratio: 1.208538e-02	ci left: 2.459306e-01	ci right 2.489239e-01	k: 79176	n:320000
ASTN2   320000 perm   144 sec   (2223 perm/sec)   p_kst 2.474250e-01   p_cons 3.365625e-03   p_joint 9.050000e-03

Joint ci ratio: 6.982402e-02	ci left: 9.130143e-03	ci right 9.793666e-03	k: 3121	n:330000
Cons ci ratio: 1.177270e-01	ci left: 3.151300e-03	ci right 3.548409e-03	k: 1104	n:330000
KS ci ratio: 1.197720e-02	ci left: 2.435847e-01	ci right 2.465228e-01	k: 80867	n:330000
ASTN2   330000 perm   150 sec   (2204 perm/sec)   p_kst 2.450515e-01   p_cons 3.345455e-03   p_joint 9.457576e-03

Joint ci ratio: 7.295222e-02	ci left: 8.113280e-03	ci right 8.730437e-03	k: 2862	n:340000
Cons ci ratio: 1.157527e-01	ci left: 3.167118e-03	ci right 3.559069e-03	k: 1142	n:340000
KS ci ratio: 1.180140e-02	ci left: 2.435551e-01	ci right 2.464493e-01	k: 83300	n:340000
ASTN2   340000 perm   156 sec   (2186 perm/sec)   p_kst 2.450000e-01   p_cons 3.358824e-03   p_joint 8.417647e-03

Joint ci ratio: 9.082283e-02	ci left: 5.053751e-03	ci right 5.537353e-03	k: 1852	n:350000
Cons ci ratio: 1.177383e-01	ci left: 2.971210e-03	ci right 3.345662e-03	k: 1104	n:350000
KS ci ratio: 1.163347e-02	ci left: 2.435160e-01	ci right 2.463683e-01	k: 85729	n:350000
ASTN2   350000 perm   161 sec   (2169 perm/sec)   p_kst 2.449400e-01   p_cons 3.154286e-03   p_joint 5.291429e-03

Joint ci ratio: 8.710388e-02	ci left: 5.350680e-03	ci right 5.840664e-03	k: 2013	n:360000
Cons ci ratio: 1.163780e-01	ci left: 2.958783e-03	ci right 3.327065e-03	k: 1130	n:360000
KS ci ratio: 1.147131e-02	ci left: 2.435181e-01	ci right 2.463304e-01	k: 88172	n:360000
ASTN2   360000 perm   167 sec   (2153 perm/sec)   p_kst 2.449222e-01   p_cons 3.138889e-03   p_joint 5.591667e-03

Joint ci ratio: 8.612704e-02	ci left: 5.327695e-03	ci right 5.809828e-03	k: 2059	n:370000
Cons ci ratio: 1.146175e-01	ci left: 2.970678e-03	ci right 3.334469e-03	k: 1165	n:370000
KS ci ratio: 1.131649e-02	ci left: 2.434961e-01	ci right 2.462700e-01	k: 90606	n:370000
ASTN2   370000 perm   173 sec   (2136 perm/sec)   p_kst 2.448811e-01   p_cons 3.148649e-03   p_joint 5.564865e-03

Joint ci ratio: 7.207718e-02	ci left: 7.445197e-03	ci right 8.004454e-03	k: 2934	n:380000
Cons ci ratio: 1.093397e-01	ci left: 3.186681e-03	ci right 3.557798e-03	k: 1280	n:380000
KS ci ratio: 1.115984e-02	ci left: 2.437382e-01	ci right 2.464762e-01	k: 93140	n:380000
ASTN2   380000 perm   179 sec   (2119 perm/sec)   p_kst 2.451053e-01   p_cons 3.368421e-03   p_joint 7.721053e-03

Joint ci ratio: 6.862336e-02	ci left: 8.012597e-03	ci right 8.584488e-03	k: 3235	n:390000
Cons ci ratio: 1.078346e-01	ci left: 3.194773e-03	ci right 3.561385e-03	k: 1316	n:390000
KS ci ratio: 1.101508e-02	ci left: 2.437813e-01	ci right 2.464840e-01	k: 95601	n:390000
ASTN2   390000 perm   186 sec   (2102 perm/sec)   p_kst 2.451308e-01   p_cons 3.374359e-03   p_joint 8.294872e-03

Joint ci ratio: 6.824885e-02	ci left: 7.900726e-03	ci right 8.461433e-03	k: 3271	n:400000
Cons ci ratio: 1.069066e-01	ci left: 3.170857e-03	ci right 3.531397e-03	k: 1339	n:400000
KS ci ratio: 1.087147e-02	ci left: 2.439697e-01	ci right 2.466390e-01	k: 98121	n:400000
ASTN2   400000 perm   192 sec   (2084 perm/sec)   p_kst 2.453025e-01   p_cons 3.347500e-03   p_joint 8.177500e-03

Joint ci ratio: 6.811943e-02	ci left: 7.739171e-03	ci right 8.287329e-03	k: 3284	n:410000
Cons ci ratio: 1.058076e-01	ci left: 3.159994e-03	ci right 3.515375e-03	k: 1367	n:410000
KS ci ratio: 1.073723e-02	ci left: 2.440152e-01	ci right 2.466518e-01	k: 100586	n:410000
ASTN2   410000 perm   199 sec   (2065 perm/sec)   p_kst 2.453317e-01   p_cons 3.334146e-03   p_joint 8.009756e-03

Joint ci ratio: 6.742614e-02	ci left: 7.714062e-03	ci right 8.254663e-03	k: 3352	n:420000
Cons ci ratio: 1.044046e-01	ci left: 3.170536e-03	ci right 3.522085e-03	k: 1404	n:420000
KS ci ratio: 1.061078e-02	ci left: 2.439565e-01	ci right 2.465613e-01	k: 103008	n:420000
ASTN2   420000 perm   205 sec   (2048 perm/sec)   p_kst 2.452571e-01   p_cons 3.342857e-03   p_joint 7.980952e-03

Joint ci ratio: 6.747302e-02	ci left: 7.525495e-03	ci right 8.053263e-03	k: 3348	n:430000
Cons ci ratio: 1.034165e-01	ci left: 3.157961e-03	ci right 3.504599e-03	k: 1431	n:430000
KS ci ratio: 1.049337e-02	ci left: 2.437360e-01	ci right 2.463093e-01	k: 105359	n:430000
ASTN2   430000 perm   212 sec   (2032 perm/sec)   p_kst 2.450209e-01   p_cons 3.327907e-03   p_joint 7.786047e-03

Joint ci ratio: 6.698698e-02	ci left: 7.463945e-03	ci right 7.983478e-03	k: 3397	n:440000
Cons ci ratio: 1.020705e-01	ci left: 3.170334e-03	ci right 3.513530e-03	k: 1469	n:440000
KS ci ratio: 1.037116e-02	ci left: 2.438318e-01	ci right 2.463761e-01	k: 107845	n:440000
ASTN2   440000 perm   218 sec   (2016 perm/sec)   p_kst 2.451023e-01   p_cons 3.338636e-03   p_joint 7.720455e-03

Joint ci ratio: 6.525438e-02	ci left: 7.695867e-03	ci right 8.217165e-03	k: 3579	n:450000
Cons ci ratio: 1.013165e-01	ci left: 3.147526e-03	ci right 3.485586e-03	k: 1491	n:450000
KS ci ratio: 1.025436e-02	ci left: 2.438792e-01	ci right 2.463951e-01	k: 110311	n:450000
ASTN2   450000 perm   225 sec   (1999 perm/sec)   p_kst 2.451356e-01   p_cons 3.313333e-03   p_joint 7.953333e-03

Joint ci ratio: 6.456392e-02	ci left: 7.693240e-03	ci right 8.208639e-03	k: 3656	n:460000
Cons ci ratio: 1.002473e-01	ci left: 3.146913e-03	ci right 3.481130e-03	k: 1523	n:460000
KS ci ratio: 1.014588e-02	ci left: 2.437620e-01	ci right 2.462499e-01	k: 112702	n:460000
ASTN2   460000 perm   232 sec   (1983 perm/sec)   p_kst 2.450043e-01   p_cons 3.310870e-03   p_joint 7.947826e-03

Joint ci ratio: 6.457833e-02	ci left: 7.527440e-03	ci right 8.031848e-03	k: 3655	n:470000
Cons ci ratio: 9.911538e-02	ci left: 3.152570e-03	ci right 3.483387e-03	k: 1558	n:470000
KS ci ratio: 1.003985e-02	ci left: 2.436838e-01	ci right 2.461448e-01	k: 115109	n:470000
ASTN2   470000 perm   240 sec   (1960 perm/sec)   p_kst 2.449128e-01   p_cons 3.314894e-03   p_joint 7.776596e-03

Outputting figure to mutsig2_images.part000000000012/ASTN2.14_4187_470000_0.24491_0.0033149_0.0077766.png
                gene_name: ASTN2
               theta_stop: 0.099 
                    nperm: 470000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.0033 
      ci_cons_bounds_left: 0.0032 
     ci_cons_bounds_right: 0.0035 
                  p_joint: 0.0078 
     ci_joint_bounds_left: 0.0075 
    ci_joint_bounds_right: 0.0080 

Current progress: 9 percent done.
ATAD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.318302e-02	ci left: 5.727616e-01	ci right 5.921903e-01	k: 5825	n:10000
Cons ci ratio: 8.357525e-03	ci left: 9.524213e-01	ci right 9.605100e-01	k: 9566	n:10000
KS ci ratio: 4.390326e-02	ci left: 4.337306e-01	ci right 4.533023e-01	k: 4435	n:10000
ATAD5   10000 perm   3 sec   (3682 perm/sec)   p_kst 4.435000e-01   p_cons 9.566000e-01   p_joint 5.825000e-01

Outputting figure to mutsig2_images.part000000000012/ATAD5.13_5627_10000_0.4435_0.9566_0.5825.png
                gene_name: ATAD5
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 11 percent done.
ASXL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.052124e-02	ci left: 3.661952e-01	ci right 3.852773e-01	k: 3757	n:10000
Cons ci ratio: 1.018103e-01	ci left: 1.224889e-01	ci right 1.357280e-01	k: 1290	n:10000
KS ci ratio: 1.990030e-02	ci left: 7.870536e-01	ci right 8.029742e-01	k: 7951	n:10000
ASXL1   10000 perm   3 sec   (3336 perm/sec)   p_kst 7.951000e-01   p_cons 1.290000e-01   p_joint 3.757000e-01

Joint ci ratio: 4.343426e-02	ci left: 2.830715e-01	ci right 2.956898e-01	k: 5787	n:20000
Cons ci ratio: 7.148428e-02	ci left: 1.260082e-01	ci right 1.353995e-01	k: 2613	n:20000
KS ci ratio: 1.362748e-02	ci left: 7.997936e-01	ci right 8.108175e-01	k: 16107	n:20000
ASXL1   20000 perm   6 sec   (3145 perm/sec)   p_kst 8.053500e-01   p_cons 1.306500e-01   p_joint 2.893500e-01

Outputting figure to mutsig2_images.part000000000012/ASXL1.11_4684_20000_0.80535_0.13065_0.28935.png
                gene_name: ASXL1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 12 percent done.
ASB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.951867e-02	ci left: 6.285922e-01	ci right 6.475273e-01	k: 6381	n:10000
Cons ci ratio: 2.643313e-02	ci left: 6.782109e-01	ci right 6.964798e-01	k: 6874	n:10000
KS ci ratio: 4.188009e-02	ci left: 4.570825e-01	ci right 4.767368e-01	k: 4669	n:10000
ASB5   10000 perm   2 sec   (5019 perm/sec)   p_kst 4.669000e-01   p_cons 6.874000e-01   p_joint 6.381000e-01

Outputting figure to mutsig2_images.part000000000012/ASB5.9_1018_10000_0.4669_0.6874_0.6381.png
                gene_name: ASB5
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 14 percent done.
ASXL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.604643e-02	ci left: 6.845600e-01	ci right 7.027271e-01	k: 6937	n:10000
Cons ci ratio: 2.395411e-02	ci left: 7.192638e-01	ci right 7.368032e-01	k: 7281	n:10000
KS ci ratio: 4.146189e-02	ci left: 4.620751e-01	ci right 4.817413e-01	k: 4719	n:10000
ASXL3   10000 perm   3 sec   (3391 perm/sec)   p_kst 4.719000e-01   p_cons 7.281000e-01   p_joint 6.937000e-01

Outputting figure to mutsig2_images.part000000000012/ASXL3.9_6795_10000_0.4719_0.7281_0.6937.png
                gene_name: ASXL3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 16 percent done.
ATAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.246282e-02	ci left: 7.442221e-01	ci right 7.612304e-01	k: 7528	n:10000
KS ci ratio: 1.873320e-02	ci left: 8.063342e-01	ci right 8.216825e-01	k: 8141	n:10000
ATAD2   10000 perm   3 sec   (3896 perm/sec)   p_kst 8.141000e-01   p_cons 7.528000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ATAD2.9_4285_10000_0.8141_0.7528_1.png
                gene_name: ATAD2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
ATAD2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.117017e-02	ci left: 7.658760e-01	ci right 7.823640e-01	k: 7742	n:10000
Cons ci ratio: 3.456684e-02	ci left: 5.527100e-01	ci right 5.722536e-01	k: 5625	n:10000
KS ci ratio: 3.044550e-02	ci left: 6.141199e-01	ci right 6.332080e-01	k: 6237	n:10000
ATAD2B   10000 perm   3 sec   (3788 perm/sec)   p_kst 6.237000e-01   p_cons 5.625000e-01   p_joint 7.742000e-01

Outputting figure to mutsig2_images.part000000000012/ATAD2B.9_4489_10000_0.6237_0.5625_0.7742.png
                gene_name: ATAD2B
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 20 percent done.
ATG2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.490358e-01	ci left: 5.985938e-02	ci right 6.959607e-02	k: 646	n:10000
Cons ci ratio: 9.995174e-02	ci left: 1.265977e-01	ci right 1.400167e-01	k: 1332	n:10000
KS ci ratio: 1.306344e-01	ci left: 7.717981e-02	ci right 8.806479e-02	k: 825	n:10000
ATG2B   10000 perm   3 sec   (3528 perm/sec)   p_kst 8.250000e-02   p_cons 1.332000e-01   p_joint 6.460000e-02

Joint ci ratio: 1.223076e-01	ci left: 4.585485e-02	ci right 5.187718e-02	k: 976	n:20000
Cons ci ratio: 7.118697e-02	ci left: 1.269437e-01	ci right 1.363637e-01	k: 2632	n:20000
KS ci ratio: 9.295830e-02	ci left: 7.784205e-02	ci right 8.548010e-02	k: 1632	n:20000
ATG2B   20000 perm   6 sec   (3142 perm/sec)   p_kst 8.160000e-02   p_cons 1.316000e-01   p_joint 4.880000e-02

Joint ci ratio: 9.608113e-02	ci left: 5.003553e-02	ci right 5.511823e-02	k: 1576	n:30000
Cons ci ratio: 5.819639e-02	ci left: 1.275304e-01	ci right 1.352078e-01	k: 3940	n:30000
KS ci ratio: 7.582484e-02	ci left: 7.868996e-02	ci right 8.492464e-02	k: 2453	n:30000
ATG2B   30000 perm   10 sec   (2931 perm/sec)   p_kst 8.176667e-02   p_cons 1.313333e-01   p_joint 5.253333e-02

Outputting figure to mutsig2_images.part000000000012/ATG2B.9_6405_30000_0.081767_0.13133_0.052533.png
                gene_name: ATG2B
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.055 

Current progress: 21 percent done.
ASTE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.230215e-02	ci left: 1.772353e-01	ci right 1.925487e-01	k: 1848	n:10000
Cons ci ratio: 3.255266e-02	ci left: 5.820912e-01	ci right 6.014553e-01	k: 5918	n:10000
KS ci ratio: 1.260329e-01	ci left: 8.261521e-02	ci right 9.382602e-02	k: 881	n:10000
ASTE1   10000 perm   3 sec   (3409 perm/sec)   p_kst 8.810000e-02   p_cons 5.918000e-01   p_joint 1.848000e-01

Joint ci ratio: 6.911550e-02	ci left: 1.337406e-01	ci right 1.433648e-01	k: 2770	n:20000
Cons ci ratio: 2.325848e-02	ci left: 5.799385e-01	ci right 5.936363e-01	k: 11736	n:20000
KS ci ratio: 8.829953e-02	ci left: 8.572561e-02	ci right 9.369414e-02	k: 1793	n:20000
ASTE1   20000 perm   6 sec   (3094 perm/sec)   p_kst 8.965000e-02   p_cons 5.868000e-01   p_joint 1.385000e-01

Outputting figure to mutsig2_images.part000000000012/ASTE1.7_2056_20000_0.08965_0.5868_0.1385.png
                gene_name: ASTE1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 23 percent done.
ATF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.965928e-02	ci left: 4.842538e-01	ci right 5.039497e-01	k: 4941	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ATF6   10000 perm   2 sec   (5086 perm/sec)   p_kst 1   p_cons 4.941000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ATF6.7_2077_10000_1_0.4941_1.png
                gene_name: ATF6
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
ATF7IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.307401e-02	ci left: 5.743665e-01	ci right 5.937845e-01	k: 5841	n:10000
Cons ci ratio: 4.747495e-02	ci left: 3.956563e-01	ci right 4.149989e-01	k: 4053	n:10000
KS ci ratio: 4.366397e-02	ci left: 4.364239e-01	ci right 4.560074e-01	k: 4462	n:10000
ATF7IP   10000 perm   2 sec   (4257 perm/sec)   p_kst 4.462000e-01   p_cons 4.053000e-01   p_joint 5.841000e-01

Outputting figure to mutsig2_images.part000000000012/ATF7IP.7_3869_10000_0.4462_0.4053_0.5841.png
                gene_name: ATF7IP
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 27 percent done.
ASAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.154516e-02	ci left: 4.610765e-01	ci right 4.807405e-01	k: 4709	n:10000
Cons ci ratio: 9.986532e-02	ci left: 1.267935e-01	ci right 1.402208e-01	k: 1334	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ASAP1   10000 perm   2 sec   (4274 perm/sec)   p_kst 1   p_cons 1.334000e-01   p_joint 4.709000e-01

Outputting figure to mutsig2_images.part000000000012/ASAP1.5_3506_10000_1_0.1334_0.4709.png
                gene_name: ASAP1
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 29 percent done.
ASPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.996107e-02	ci left: 6.216565e-01	ci right 6.406671e-01	k: 6312	n:10000
Cons ci ratio: 4.073706e-02	ci left: 4.708643e-01	ci right 4.905469e-01	k: 4807	n:10000
KS ci ratio: 3.295165e-02	ci left: 5.761720e-01	ci right 5.955779e-01	k: 5859	n:10000
ASPA   10000 perm   2 sec   (5511 perm/sec)   p_kst 5.859000e-01   p_cons 4.807000e-01   p_joint 6.312000e-01

Outputting figure to mutsig2_images.part000000000012/ASPA.5_966_10000_0.5859_0.4807_0.6312.png
                gene_name: ASPA
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 30 percent done.
ASTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.697756e-03	ci left: 9.764223e-01	ci right 9.820937e-01	k: 9794	n:10000
KS ci ratio: 1.117529e-02	ci left: 9.195597e-01	ci right 9.299912e-01	k: 9249	n:10000
ASTL   10000 perm   2 sec   (5401 perm/sec)   p_kst 9.249000e-01   p_cons 9.794000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASTL.5_1332_10000_0.9249_0.9794_1.png
                gene_name: ASTL
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
ASXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.342080e-02	ci left: 3.405470e-01	ci right 3.593405e-01	k: 3499	n:10000
Cons ci ratio: 5.153779e-02	ci left: 3.569465e-01	ci right 3.759313e-01	k: 3664	n:10000
KS ci ratio: 7.653682e-02	ci left: 1.997852e-01	ci right 2.157854e-01	k: 2077	n:10000
ASXL2   10000 perm   2 sec   (4147 perm/sec)   p_kst 2.077000e-01   p_cons 3.664000e-01   p_joint 3.499000e-01

Outputting figure to mutsig2_images.part000000000012/ASXL2.5_4356_10000_0.2077_0.3664_0.3499.png
                gene_name: ASXL2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 34 percent done.
ATG2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.018502e-02	ci left: 1.516867e-01	ci right 1.661126e-01	k: 1588	n:10000
Cons ci ratio: 1.218371e-01	ci left: 8.805737e-02	ci right 9.958050e-02	k: 937	n:10000
KS ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
ATG2A   10000 perm   3 sec   (3683 perm/sec)   p_kst 3.199000e-01   p_cons 9.370000e-02   p_joint 1.588000e-01

Joint ci ratio: 5.724956e-02	ci left: 1.844351e-01	ci right 1.953552e-01	k: 3797	n:20000
Cons ci ratio: 8.471597e-02	ci left: 9.258877e-02	ci right 1.008289e-01	k: 1933	n:20000
KS ci ratio: 4.018921e-02	ci left: 3.158241e-01	ci right 3.288276e-01	k: 6446	n:20000
ATG2A   20000 perm   6 sec   (3387 perm/sec)   p_kst 3.223000e-01   p_cons 9.665000e-02   p_joint 1.898500e-01

Outputting figure to mutsig2_images.part000000000012/ATG2A.5_5981_20000_0.3223_0.09665_0.18985.png
                gene_name: ATG2A
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 36 percent done.
ATG4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.803467e-02	ci left: 3.041153e-01	ci right 3.223936e-01	k: 3132	n:10000
Cons ci ratio: 1.749659e-02	ci left: 8.264586e-01	ci right 8.411464e-01	k: 8339	n:10000
KS ci ratio: 8.049148e-02	ci left: 1.839270e-01	ci right 1.994530e-01	k: 1916	n:10000
ATG4C   10000 perm   2 sec   (5165 perm/sec)   p_kst 1.916000e-01   p_cons 8.339000e-01   p_joint 3.132000e-01

Outputting figure to mutsig2_images.part000000000012/ATG4C.5_1417_10000_0.1916_0.8339_0.3132.png
                gene_name: ATG4C
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 38 percent done.
ASNSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
Cons ci ratio: 2.989652e-01	ci left: 1.437251e-02	ci right 1.951444e-02	k: 168	n:10000
KS ci ratio: 1.320333e-01	ci left: 7.562816e-02	ci right 8.641740e-02	k: 809	n:10000
ASNSD1   10000 perm   2 sec   (5266 perm/sec)   p_kst 8.090000e-02   p_cons 1.680000e-02   p_joint 1.050000e-02

Joint ci ratio: 3.815379e-01	ci left: 4.250695e-03	ci right 6.297200e-03	k: 104	n:20000
Cons ci ratio: 2.095217e-01	ci left: 1.539613e-02	ci right 1.904617e-02	k: 343	n:20000
KS ci ratio: 9.599980e-02	ci left: 7.324420e-02	ci right 8.067935e-02	k: 1538	n:20000
ASNSD1   20000 perm   4 sec   (4735 perm/sec)   p_kst 7.690000e-02   p_cons 1.715000e-02   p_joint 5.200000e-03

Joint ci ratio: 1.899297e-01	ci left: 1.266928e-02	ci right 1.535938e-02	k: 419	n:30000
Cons ci ratio: 1.715833e-01	ci left: 1.563128e-02	ci right 1.859663e-02	k: 512	n:30000
KS ci ratio: 7.662683e-02	ci left: 7.715067e-02	ci right 8.333091e-02	k: 2406	n:30000
ASNSD1   30000 perm   7 sec   (4533 perm/sec)   p_kst 8.020000e-02   p_cons 1.706667e-02   p_joint 1.396667e-02

Joint ci ratio: 1.428596e-01	ci left: 1.715376e-02	ci right 1.981679e-02	k: 738	n:40000
Cons ci ratio: 1.483756e-01	ci left: 1.587624e-02	ci right 1.844454e-02	k: 685	n:40000
KS ci ratio: 6.584194e-02	ci left: 7.871359e-02	ci right 8.409737e-02	k: 3255	n:40000
ASNSD1   40000 perm   9 sec   (4271 perm/sec)   p_kst 8.137500e-02   p_cons 1.712500e-02   p_joint 1.845000e-02

Joint ci ratio: 1.875639e-01	ci left: 7.847413e-03	ci right 9.490395e-03	k: 432	n:50000
Cons ci ratio: 1.384489e-01	ci left: 1.468651e-02	ci right 1.689023e-02	k: 788	n:50000
KS ci ratio: 5.901732e-02	ci left: 7.868210e-02	ci right 8.348667e-02	k: 4053	n:50000
ASNSD1   50000 perm   13 sec   (3899 perm/sec)   p_kst 8.106000e-02   p_cons 1.576000e-02   p_joint 8.640000e-03

Joint ci ratio: 1.778310e-01	ci left: 7.318665e-03	ci right 8.762863e-03	k: 481	n:60000
Cons ci ratio: 1.274017e-01	ci left: 1.454287e-02	ci right 1.653773e-02	k: 931	n:60000
KS ci ratio: 5.401313e-02	ci left: 7.851612e-02	ci right 8.289121e-02	k: 4841	n:60000
ASNSD1   60000 perm   17 sec   (3611 perm/sec)   p_kst 8.068333e-02   p_cons 1.551667e-02   p_joint 8.016667e-03

Joint ci ratio: 1.355032e-01	ci left: 1.101319e-02	ci right 1.262765e-02	k: 826	n:70000
Cons ci ratio: 1.193146e-01	ci left: 1.427892e-02	ci right 1.610445e-02	k: 1062	n:70000
KS ci ratio: 4.926091e-02	ci left: 8.090994e-02	ci right 8.501042e-02	k: 5806	n:70000
ASNSD1   70000 perm   20 sec   (3478 perm/sec)   p_kst 8.294286e-02   p_cons 1.517143e-02   p_joint 1.180000e-02

Joint ci ratio: 1.379845e-01	ci left: 9.297941e-03	ci right 1.068794e-02	k: 798	n:80000
Cons ci ratio: 1.115554e-01	ci left: 1.435140e-02	ci right 1.605902e-02	k: 1215	n:80000
KS ci ratio: 4.603996e-02	ci left: 8.117138e-02	ci right 8.500892e-02	k: 6646	n:80000
ASNSD1   80000 perm   23 sec   (3478 perm/sec)   p_kst 8.307500e-02   p_cons 1.518750e-02   p_joint 9.975000e-03

Joint ci ratio: 1.049421e-01	ci left: 1.446489e-02	ci right 1.607768e-02	k: 1373	n:90000
Cons ci ratio: 1.052537e-01	ci left: 1.437831e-02	ci right 1.598650e-02	k: 1365	n:90000
KS ci ratio: 4.329611e-02	ci left: 8.166756e-02	ci right 8.529267e-02	k: 7512	n:90000
ASNSD1   90000 perm   26 sec   (3467 perm/sec)   p_kst 8.346667e-02   p_cons 1.516667e-02   p_joint 1.525556e-02

Joint ci ratio: 1.084777e-01	ci left: 1.219029e-02	ci right 1.359817e-02	k: 1288	n:100000
Cons ci ratio: 1.001469e-01	ci left: 1.433374e-02	ci right 1.585458e-02	k: 1508	n:100000
KS ci ratio: 4.108178e-02	ci left: 8.173308e-02	ci right 8.517113e-02	k: 8344	n:100000
ASNSD1   100000 perm   29 sec   (3445 perm/sec)   p_kst 8.344000e-02   p_cons 1.508000e-02   p_joint 1.288000e-02

Joint ci ratio: 1.116047e-01	ci left: 1.047155e-02	ci right 1.171806e-02	k: 1219	n:110000
Cons ci ratio: 9.545428e-02	ci left: 1.437871e-02	ci right 1.582884e-02	k: 1660	n:110000
KS ci ratio: 3.912695e-02	ci left: 8.197978e-02	ci right 8.526039e-02	k: 9197	n:110000
ASNSD1   110000 perm   32 sec   (3418 perm/sec)   p_kst 8.360909e-02   p_cons 1.509091e-02   p_joint 1.108182e-02

Joint ci ratio: 1.097637e-01	ci left: 9.939080e-03	ci right 1.110142e-02	k: 1261	n:120000
Cons ci ratio: 9.203733e-02	ci left: 1.420581e-02	ci right 1.558444e-02	k: 1786	n:120000
KS ci ratio: 3.751874e-02	ci left: 8.181679e-02	ci right 8.495338e-02	k: 10005	n:120000
ASNSD1   120000 perm   36 sec   (3360 perm/sec)   p_kst 8.337500e-02   p_cons 1.488333e-02   p_joint 1.050833e-02

Joint ci ratio: 1.134991e-01	ci left: 8.575982e-03	ci right 9.615323e-03	k: 1181	n:130000
Cons ci ratio: 8.863407e-02	ci left: 1.416564e-02	ci right 1.548690e-02	k: 1926	n:130000
KS ci ratio: 3.602479e-02	ci left: 8.197115e-02	ci right 8.498592e-02	k: 10851	n:130000
ASNSD1   130000 perm   39 sec   (3296 perm/sec)   p_kst 8.346923e-02   p_cons 1.481538e-02   p_joint 9.084615e-03

Joint ci ratio: 9.449464e-02	ci left: 1.156872e-02	ci right 1.272304e-02	k: 1699	n:140000
Cons ci ratio: 8.560341e-02	ci left: 1.412502e-02	ci right 1.539519e-02	k: 2065	n:140000
KS ci ratio: 3.467678e-02	ci left: 8.219062e-02	ci right 8.509808e-02	k: 11709	n:140000
ASNSD1   140000 perm   43 sec   (3267 perm/sec)   p_kst 8.363571e-02   p_cons 1.475000e-02   p_joint 1.213571e-02

Outputting figure to mutsig2_images.part000000000012/ASNSD1.4_1944_140000_0.083636_0.01475_0.012136.png
                gene_name: ASNSD1
               theta_stop: 0.094 
                    nperm: 140000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 39 percent done.
ASZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.947409e-03	ci left: 9.566005e-01	ci right 9.643283e-01	k: 9606	n:10000
Cons ci ratio: 9.150557e-03	ci left: 9.438819e-01	ci right 9.526547e-01	k: 9484	n:10000
KS ci ratio: 1.563421e-02	ci left: 8.559009e-01	ci right 8.694871e-01	k: 8628	n:10000
ASZ1   10000 perm   2 sec   (5425 perm/sec)   p_kst 8.628000e-01   p_cons 9.484000e-01   p_joint 9.606000e-01

Outputting figure to mutsig2_images.part000000000012/ASZ1.4_1480_10000_0.8628_0.9484_0.9606.png
                gene_name: ASZ1
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 41 percent done.
ATCAY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.385802e-02	ci left: 3.368712e-01	ci right 3.556184e-01	k: 3462	n:10000
Cons ci ratio: 6.419492e-02	ci left: 2.628009e-01	ci right 2.803323e-01	k: 2715	n:10000
KS ci ratio: 6.379177e-02	ci left: 2.652752e-01	ci right 2.828566e-01	k: 2740	n:10000
ATCAY   10000 perm   2 sec   (5393 perm/sec)   p_kst 2.740000e-01   p_cons 2.715000e-01   p_joint 3.462000e-01

Outputting figure to mutsig2_images.part000000000012/ATCAY.4_1164_10000_0.274_0.2715_0.3462.png
                gene_name: ATCAY
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 43 percent done.
ATG16L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.456935e-01	ci left: 6.256264e-02	ci right 7.249110e-02	k: 674	n:10000
Cons ci ratio: 3.362151e-02	ci left: 5.663433e-01	ci right 5.858123e-01	k: 5761	n:10000
KS ci ratio: 3.113784e-01	ci left: 1.317075e-02	ci right 1.811726e-02	k: 155	n:10000
ATG16L1   10000 perm   2 sec   (4861 perm/sec)   p_kst 1.550000e-02   p_cons 5.761000e-01   p_joint 6.740000e-02

Joint ci ratio: 1.432265e-01	ci left: 3.350911e-02	ci right 3.872688e-02	k: 721	n:20000
Cons ci ratio: 2.409573e-02	ci left: 5.626531e-01	ci right 5.764266e-01	k: 11391	n:20000
KS ci ratio: 2.191154e-01	ci left: 1.402283e-02	ci right 1.752001e-02	k: 314	n:20000
ATG16L1   20000 perm   4 sec   (4616 perm/sec)   p_kst 1.570000e-02   p_cons 5.695500e-01   p_joint 3.605000e-02

Joint ci ratio: 9.563391e-02	ci left: 5.049159e-02	ci right 5.559541e-02	k: 1590	n:30000
Cons ci ratio: 1.956570e-02	ci left: 5.666447e-01	ci right 5.778746e-01	k: 17168	n:30000
KS ci ratio: 1.817631e-01	ci left: 1.387780e-02	ci right 1.668388e-02	k: 457	n:30000
ATG16L1   30000 perm   7 sec   (4481 perm/sec)   p_kst 1.523333e-02   p_cons 5.722667e-01   p_joint 5.300000e-02

Joint ci ratio: 7.550775e-02	ci left: 6.073652e-02	ci right 6.552714e-02	k: 2524	n:40000
Cons ci ratio: 1.702661e-02	ci left: 5.650308e-01	ci right 5.747591e-01	k: 22796	n:40000
KS ci ratio: 1.564608e-01	ci left: 1.424009e-02	ci right 1.668099e-02	k: 617	n:40000
ATG16L1   40000 perm   10 sec   (4192 perm/sec)   p_kst 1.542500e-02   p_cons 5.699000e-01   p_joint 6.310000e-02

Joint ci ratio: 7.087021e-02	ci left: 5.561289e-02	ci right 5.971865e-02	k: 2882	n:50000
Cons ci ratio: 1.518261e-02	ci left: 5.670483e-01	ci right 5.757434e-01	k: 28570	n:50000
KS ci ratio: 1.388068e-01	ci left: 1.460925e-02	ci right 1.680750e-02	k: 784	n:50000
ATG16L1   50000 perm   13 sec   (3927 perm/sec)   p_kst 1.568000e-02   p_cons 5.714000e-01   p_joint 5.764000e-02

Joint ci ratio: 6.393987e-02	ci left: 5.706201e-02	ci right 6.084746e-02	k: 3536	n:60000
Cons ci ratio: 1.385039e-02	ci left: 5.677622e-01	ci right 5.756975e-01	k: 34304	n:60000
KS ci ratio: 1.269184e-01	ci left: 1.465587e-02	ci right 1.665804e-02	k: 938	n:60000
ATG16L1   60000 perm   15 sec   (3901 perm/sec)   p_kst 1.563333e-02   p_cons 5.717333e-01   p_joint 5.893333e-02

Joint ci ratio: 5.910181e-02	ci left: 5.737836e-02	ci right 6.088687e-02	k: 4138	n:70000
Cons ci ratio: 1.282837e-02	ci left: 5.678526e-01	ci right 5.751986e-01	k: 40007	n:70000
KS ci ratio: 1.172593e-01	ci left: 1.479207e-02	ci right 1.664839e-02	k: 1099	n:70000
ATG16L1   70000 perm   18 sec   (3865 perm/sec)   p_kst 1.570000e-02   p_cons 5.715286e-01   p_joint 5.911429e-02

Joint ci ratio: 7.817109e-02	ci left: 2.928242e-02	ci right 3.167679e-02	k: 2437	n:80000
Cons ci ratio: 1.197425e-02	ci left: 5.691381e-01	ci right 5.760066e-01	k: 45806	n:80000
KS ci ratio: 1.085144e-01	ci left: 1.517835e-02	ci right 1.693200e-02	k: 1283	n:80000
ATG16L1   80000 perm   21 sec   (3810 perm/sec)   p_kst 1.603750e-02   p_cons 5.725750e-01   p_joint 3.046250e-02

Joint ci ratio: 7.506275e-02	ci left: 2.830601e-02	ci right 3.052446e-02	k: 2646	n:90000
Cons ci ratio: 1.129400e-02	ci left: 5.691377e-01	ci right 5.756132e-01	k: 51514	n:90000
KS ci ratio: 1.026157e-01	ci left: 1.513616e-02	ci right 1.678414e-02	k: 1435	n:90000
ATG16L1   90000 perm   24 sec   (3735 perm/sec)   p_kst 1.594444e-02   p_cons 5.723778e-01   p_joint 2.940000e-02

Joint ci ratio: 7.052340e-02	ci left: 2.891204e-02	ci right 3.103534e-02	k: 2996	n:100000
Cons ci ratio: 1.074309e-02	ci left: 5.679955e-01	ci right 5.741404e-01	k: 57107	n:100000
KS ci ratio: 9.721237e-02	ci left: 1.522161e-02	ci right 1.678664e-02	k: 1599	n:100000
ATG16L1   100000 perm   27 sec   (3665 perm/sec)   p_kst 1.599000e-02   p_cons 5.710700e-01   p_joint 2.996000e-02

Outputting figure to mutsig2_images.part000000000012/ATG16L1.4_1896_100000_0.01599_0.57107_0.02996.png
                gene_name: ATG16L1
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 45 percent done.
ATG4D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.433543e-02	ci left: 7.129034e-01	ci right 7.305672e-01	k: 7218	n:10000
Cons ci ratio: 3.587766e-02	ci left: 5.342767e-01	ci right 5.538976e-01	k: 5441	n:10000
KS ci ratio: 4.042023e-02	ci left: 4.747605e-01	ci right 4.944485e-01	k: 4846	n:10000
ATG4D   10000 perm   2 sec   (5469 perm/sec)   p_kst 4.846000e-01   p_cons 5.441000e-01   p_joint 7.218000e-01

Outputting figure to mutsig2_images.part000000000012/ATG4D.4_1465_10000_0.4846_0.5441_0.7218.png
                gene_name: ATG4D
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 46 percent done.
ATG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.046880e-02	ci left: 4.741611e-01	ci right 4.938483e-01	k: 4840	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ATG5   10000 perm   2 sec   (5140 perm/sec)   p_kst 1   p_cons 4.840000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ATG5.4_856_10000_1_0.484_1.png
                gene_name: ATG5
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
ASAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.044556e-03	ci left: 9.652030e-01	ci right 9.721204e-01	k: 9688	n:10000
Cons ci ratio: 3.815763e-02	ci left: 5.035510e-01	ci right 5.232412e-01	k: 5134	n:10000
KS ci ratio: 4.139542e-02	ci left: 4.628739e-01	ci right 4.825420e-01	k: 4727	n:10000
ASAP2   10000 perm   2 sec   (5179 perm/sec)   p_kst 4.727000e-01   p_cons 5.134000e-01   p_joint 9.688000e-01

Outputting figure to mutsig2_images.part000000000012/ASAP2.3_3133_10000_0.4727_0.5134_0.9688.png
                gene_name: ASAP2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 50 percent done.
ASB15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.460899e-02	ci left: 5.521087e-01	ci right 5.716552e-01	k: 5619	n:10000
Cons ci ratio: 6.061366e-02	ci left: 2.858743e-01	ci right 3.038454e-01	k: 2948	n:10000
KS ci ratio: 2.193174e-02	ci left: 7.531230e-01	ci right 7.699244e-01	k: 7616	n:10000
ASB15   10000 perm   2 sec   (5927 perm/sec)   p_kst 7.616000e-01   p_cons 2.948000e-01   p_joint 5.619000e-01

Outputting figure to mutsig2_images.part000000000012/ASB15.3_1803_10000_0.7616_0.2948_0.5619.png
                gene_name: ASB15
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 52 percent done.
ASB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.398467e-02	ci left: 2.640875e-01	ci right 2.816450e-01	k: 2728	n:10000
Cons ci ratio: 3.635751e-02	ci left: 5.276680e-01	ci right 5.473101e-01	k: 5375	n:10000
KS ci ratio: 7.982246e-02	ci left: 1.864866e-01	ci right 2.020919e-01	k: 1942	n:10000
ASB2   10000 perm   2 sec   (5645 perm/sec)   p_kst 1.942000e-01   p_cons 5.375000e-01   p_joint 2.728000e-01

Outputting figure to mutsig2_images.part000000000012/ASB2.3_1796_10000_0.1942_0.5375_0.2728.png
                gene_name: ASB2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 54 percent done.
ASCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.753382e-02	ci left: 6.602828e-01	ci right 6.788183e-01	k: 6696	n:10000
KS ci ratio: 1.553508e-02	ci left: 8.574316e-01	ci right 8.709555e-01	k: 8643	n:10000
ASCC2   10000 perm   2 sec   (5319 perm/sec)   p_kst 8.643000e-01   p_cons 6.696000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASCC2.3_2350_10000_0.8643_0.6696_1.png
                gene_name: ASCC2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
ASPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.414471e-02	ci left: 3.344873e-01	ci right 3.532038e-01	k: 3438	n:10000
Cons ci ratio: 6.608005e-02	ci left: 2.516216e-01	ci right 2.689183e-01	k: 2602	n:10000
KS ci ratio: 5.148235e-02	ci left: 3.574437e-01	ci right 3.764339e-01	k: 3669	n:10000
ASPH   10000 perm   2 sec   (4232 perm/sec)   p_kst 3.669000e-01   p_cons 2.602000e-01   p_joint 3.438000e-01

Outputting figure to mutsig2_images.part000000000012/ASPH.3_3113_10000_0.3669_0.2602_0.3438.png
                gene_name: ASPH
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 57 percent done.
ASPRV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.475109e-02	ci left: 2.594365e-01	ci right 2.768988e-01	k: 2681	n:10000
Cons ci ratio: 1.747592e-01	ci left: 4.370078e-02	ci right 5.216506e-02	k: 478	n:10000
KS ci ratio: 3.949308e-02	ci left: 4.863528e-01	ci right 5.060494e-01	k: 4962	n:10000
ASPRV1   10000 perm   2 sec   (6440 perm/sec)   p_kst 4.962000e-01   p_cons 4.780000e-02   p_joint 2.681000e-01

Joint ci ratio: 5.062348e-02	ci left: 2.247768e-01	ci right 2.365016e-01	k: 4612	n:20000
Cons ci ratio: 1.194431e-01	ci left: 4.804007e-02	ci right 5.419126e-02	k: 1021	n:20000
KS ci ratio: 2.782480e-02	ci left: 4.910962e-01	ci right 5.050043e-01	k: 9961	n:20000
ASPRV1   20000 perm   4 sec   (5596 perm/sec)   p_kst 4.980500e-01   p_cons 5.105000e-02   p_joint 2.306000e-01

Joint ci ratio: 3.781451e-02	ci left: 2.587202e-01	ci right 2.687256e-01	k: 7911	n:30000
Cons ci ratio: 9.903252e-02	ci left: 4.717018e-02	ci right 5.211750e-02	k: 1488	n:30000
KS ci ratio: 2.257826e-02	ci left: 4.954922e-01	ci right 5.068409e-01	k: 15035	n:30000
ASPRV1   30000 perm   6 sec   (5286 perm/sec)   p_kst 5.011667e-01   p_cons 4.960000e-02   p_joint 2.637000e-01

Outputting figure to mutsig2_images.part000000000012/ASPRV1.3_1036_30000_0.50117_0.0496_0.2637.png
                gene_name: ASPRV1
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 59 percent done.
ATAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.997954e-03	ci left: 9.656240e-01	ci right 9.724991e-01	k: 9692	n:10000
KS ci ratio: 9.617167e-03	ci left: 9.385866e-01	ci right 9.477531e-01	k: 9433	n:10000
ATAD1   10000 perm   2 sec   (5894 perm/sec)   p_kst 9.433000e-01   p_cons 9.692000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ATAD1.3_1122_10000_0.9433_0.9692_1.png
                gene_name: ATAD1
               theta_stop: 0.0096 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
ATE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.967221e-02	ci left: 6.261796e-01	ci right 6.451413e-01	k: 6357	n:10000
Cons ci ratio: 6.742779e-02	ci left: 2.440081e-01	ci right 2.611363e-01	k: 2525	n:10000
KS ci ratio: 2.995464e-02	ci left: 6.217570e-01	ci right 6.407665e-01	k: 6313	n:10000
ATE1   10000 perm   2 sec   (4716 perm/sec)   p_kst 6.313000e-01   p_cons 2.525000e-01   p_joint 6.357000e-01

Outputting figure to mutsig2_images.part000000000012/ATE1.3_1738_10000_0.6313_0.2525_0.6357.png
                gene_name: ATE1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 62 percent done.
ATF7IP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.770207e-02	ci left: 5.095531e-01	ci right 5.292356e-01	k: 5194	n:10000
Cons ci ratio: 1.571331e-02	ci left: 8.546766e-01	ci right 8.683121e-01	k: 8616	n:10000
KS ci ratio: 5.133863e-02	ci left: 3.587363e-01	ci right 3.777405e-01	k: 3682	n:10000
ATF7IP2   10000 perm   2 sec   (5754 perm/sec)   p_kst 3.682000e-01   p_cons 8.616000e-01   p_joint 5.194000e-01

Outputting figure to mutsig2_images.part000000000012/ATF7IP2.3_2089_10000_0.3682_0.8616_0.5194.png
                gene_name: ATF7IP2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 64 percent done.
ASB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.307477e-02	ci left: 1.744810e-01	ci right 1.897046e-01	k: 1820	n:10000
KS ci ratio: 2.598517e-02	ci left: 6.855679e-01	ci right 7.037185e-01	k: 6947	n:10000
ASB1   10000 perm   2 sec   (6539 perm/sec)   p_kst 6.947000e-01   p_cons 1.820000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASB1.2_1028_10000_0.6947_0.182_1.png
                gene_name: ASB1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
ASB18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.823406e-02	ci left: 5.025508e-01	ci right 5.222420e-01	k: 5124	n:10000
KS ci ratio: 1.253417e-02	ci left: 9.014466e-01	ci right 9.129149e-01	k: 9073	n:10000
ASB18   10000 perm   2 sec   (5980 perm/sec)   p_kst 9.073000e-01   p_cons 5.124000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASB18.2_1425_10000_0.9073_0.5124_1.png
                gene_name: ASB18
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
ASB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.259546e-01	ci left: 8.271234e-02	ci right 9.392883e-02	k: 882	n:10000
Cons ci ratio: 1.259546e-01	ci left: 8.271234e-02	ci right 9.392883e-02	k: 882	n:10000
KS ci ratio: 9.205164e-02	ci left: 1.463885e-01	ci right 1.606140e-01	k: 1534	n:10000
ASB3   10000 perm   2 sec   (6087 perm/sec)   p_kst 1.534000e-01   p_cons 8.820000e-02   p_joint 8.820000e-02

Joint ci ratio: 6.934809e-02	ci left: 1.329523e-01	ci right 1.425533e-01	k: 2754	n:20000
Cons ci ratio: 8.416306e-02	ci left: 9.371693e-02	ci right 1.020004e-01	k: 1956	n:20000
KS ci ratio: 6.487930e-02	ci left: 1.493191e-01	ci right 1.593816e-01	k: 3086	n:20000
ASB3   20000 perm   4 sec   (5170 perm/sec)   p_kst 1.543000e-01   p_cons 9.780000e-02   p_joint 1.377000e-01

Outputting figure to mutsig2_images.part000000000012/ASB3.2_1593_20000_0.1543_0.0978_0.1377.png
                gene_name: ASB3
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 70 percent done.
ASB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.081627e-02	ci left: 6.083937e-01	ci right 6.275375e-01	k: 6180	n:10000
KS ci ratio: 2.136378e-02	ci left: 7.626362e-01	ci right 7.792057e-01	k: 7710	n:10000
ASB4   10000 perm   2 sec   (6240 perm/sec)   p_kst 7.710000e-01   p_cons 6.180000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASB4.2_1373_10000_0.771_0.618_1.png
                gene_name: ASB4
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
ASB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.040927e-02	ci left: 9.291629e-01	ci right 9.389824e-01	k: 9342	n:10000
Cons ci ratio: 2.532550e-02	ci left: 6.964572e-01	ci right 7.144230e-01	k: 7055	n:10000
KS ci ratio: 2.978118e-02	ci left: 6.244707e-01	ci right 6.434512e-01	k: 6340	n:10000
ASB6   10000 perm   1 sec   (6713 perm/sec)   p_kst 6.340000e-01   p_cons 7.055000e-01   p_joint 9.342000e-01

Outputting figure to mutsig2_images.part000000000012/ASB6.2_1290_10000_0.634_0.7055_0.9342.png
                gene_name: ASB6
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 73 percent done.
ASB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.444821e-03	ci left: 9.850162e-01	ci right 9.894933e-01	k: 9874	n:10000
Cons ci ratio: 5.407281e-02	ci left: 3.350832e-01	ci right 3.538075e-01	k: 3444	n:10000
KS ci ratio: 1.391793e-02	ci left: 8.817580e-01	ci right 8.942150e-01	k: 8881	n:10000
ASB7   10000 perm   1 sec   (6817 perm/sec)   p_kst 8.881000e-01   p_cons 3.444000e-01   p_joint 9.874000e-01

Outputting figure to mutsig2_images.part000000000012/ASB7.2_977_10000_0.8881_0.3444_0.9874.png
                gene_name: ASB7
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 75 percent done.
ASB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.348876e-02	ci left: 7.270405e-01	ci right 7.444219e-01	k: 7358	n:10000
Cons ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
KS ci ratio: 3.916278e-02	ci left: 4.905513e-01	ci right 5.102485e-01	k: 5004	n:10000
ASB9   10000 perm   2 sec   (6609 perm/sec)   p_kst 5.004000e-01   p_cons 3.297000e-01   p_joint 7.358000e-01

Outputting figure to mutsig2_images.part000000000012/ASB9.2_942_10000_0.5004_0.3297_0.7358.png
                gene_name: ASB9
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 77 percent done.
ASCL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.856532e-02	ci left: 3.848032e-01	ci right 4.040584e-01	k: 3944	n:10000
KS ci ratio: 3.868023e-02	ci left: 4.967503e-01	ci right 5.164458e-01	k: 5066	n:10000
ASCL3   10000 perm   1 sec   (7252 perm/sec)   p_kst 5.066000e-01   p_cons 3.944000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASCL3.2_550_10000_0.5066_0.3944_1.png
                gene_name: ASCL3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
ASF1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.990962e-02	ci left: 6.224605e-01	ci right 6.414626e-01	k: 6320	n:10000
KS ci ratio: 1.206707e-02	ci left: 9.078193e-01	ci right 9.189385e-01	k: 9135	n:10000
ASF1A   10000 perm   1 sec   (7010 perm/sec)   p_kst 9.135000e-01   p_cons 6.320000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASF1A.2_520_10000_0.9135_0.632_1.png
                gene_name: ASF1A
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
ASF1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.990030e-02	ci left: 7.870536e-01	ci right 8.029742e-01	k: 7951	n:10000
KS ci ratio: 1.910346e-02	ci left: 8.002425e-01	ci right 8.157777e-01	k: 8081	n:10000
ASF1B   10000 perm   2 sec   (5381 perm/sec)   p_kst 8.081000e-01   p_cons 7.951000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASF1B.2_625_10000_0.8081_0.7951_1.png
                gene_name: ASF1B
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
ASGR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.905301e-03	ci left: 9.465858e-01	ci right 9.551491e-01	k: 9510	n:10000
Cons ci ratio: 5.181638e-02	ci left: 3.544610e-01	ci right 3.734183e-01	k: 3639	n:10000
KS ci ratio: 4.925322e-02	ci left: 3.781344e-01	ci right 3.973310e-01	k: 3877	n:10000
ASGR1   10000 perm   2 sec   (6276 perm/sec)   p_kst 3.877000e-01   p_cons 3.639000e-01   p_joint 9.510000e-01

Outputting figure to mutsig2_images.part000000000012/ASGR1.2_908_10000_0.3877_0.3639_0.951.png
                gene_name: ASGR1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 84 percent done.
ASGR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.152669e-02	ci left: 3.570460e-01	ci right 3.760318e-01	k: 3665	n:10000
Cons ci ratio: 5.706448e-02	ci left: 3.113568e-01	ci right 3.297478e-01	k: 3205	n:10000
KS ci ratio: 7.532587e-02	ci left: 2.050098e-01	ci right 2.211576e-01	k: 2130	n:10000
ASGR2   10000 perm   1 sec   (6780 perm/sec)   p_kst 2.130000e-01   p_cons 3.205000e-01   p_joint 3.665000e-01

Outputting figure to mutsig2_images.part000000000012/ASGR2.2_968_10000_0.213_0.3205_0.3665.png
                gene_name: ASGR2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 86 percent done.
ASH2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.864716e-02	ci left: 2.996526e-01	ci right 3.178589e-01	k: 3087	n:10000
Cons ci ratio: 2.102486e-02	ci left: 7.683064e-01	ci right 7.847323e-01	k: 7766	n:10000
KS ci ratio: 1.232190e-01	ci left: 8.621021e-02	ci right 9.762881e-02	k: 918	n:10000
ASH2L   10000 perm   2 sec   (5407 perm/sec)   p_kst 9.180000e-02   p_cons 7.766000e-01   p_joint 3.087000e-01

Joint ci ratio: 5.487967e-02	ci left: 1.976418e-01	ci right 2.088446e-01	k: 4064	n:20000
Cons ci ratio: 1.486675e-02	ci left: 7.707624e-01	ci right 7.823571e-01	k: 15532	n:20000
KS ci ratio: 8.687077e-02	ci left: 8.837200e-02	ci right 9.644695e-02	k: 1847	n:20000
ASH2L   20000 perm   4 sec   (4985 perm/sec)   p_kst 9.235000e-02   p_cons 7.766000e-01   p_joint 2.032000e-01

Outputting figure to mutsig2_images.part000000000012/ASH2L.2_1951_20000_0.09235_0.7766_0.2032.png
                gene_name: ASH2L
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 88 percent done.
ASL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.270362e-02	ci left: 2.721060e-01	ci right 2.898218e-01	k: 2809	n:10000
Cons ci ratio: 8.879380e-02	ci left: 1.558095e-01	ci right 1.703873e-01	k: 1630	n:10000
KS ci ratio: 1.873320e-02	ci left: 8.063342e-01	ci right 8.216825e-01	k: 8141	n:10000
ASL   10000 perm   2 sec   (5162 perm/sec)   p_kst 8.141000e-01   p_cons 1.630000e-01   p_joint 2.809000e-01

Outputting figure to mutsig2_images.part000000000012/ASL.2_1459_10000_0.8141_0.163_0.2809.png
                gene_name: ASL
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 89 percent done.
ASPHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.378589e-01	ci left: 6.962154e-02	ci right 8.002777e-02	k: 747	n:10000
Cons ci ratio: 1.586988e-01	ci left: 5.292045e-02	ci right 6.213942e-02	k: 574	n:10000
KS ci ratio: 1.980258e-02	ci left: 7.886762e-01	ci right 8.045507e-01	k: 7967	n:10000
ASPHD1   10000 perm   2 sec   (5714 perm/sec)   p_kst 7.967000e-01   p_cons 5.740000e-02   p_joint 7.470000e-02

Joint ci ratio: 9.671650e-02	ci left: 7.221756e-02	ci right 7.960630e-02	k: 1517	n:20000
Cons ci ratio: 1.123751e-01	ci left: 5.411849e-02	ci right 6.061095e-02	k: 1146	n:20000
KS ci ratio: 1.431716e-02	ci left: 7.836823e-01	ci right 7.950334e-01	k: 15788	n:20000
ASPHD1   20000 perm   4 sec   (5481 perm/sec)   p_kst 7.894000e-01   p_cons 5.730000e-02   p_joint 7.585000e-02

Joint ci ratio: 7.631701e-02	ci left: 7.774015e-02	ci right 8.394131e-02	k: 2424	n:30000
Cons ci ratio: 9.117969e-02	ci left: 5.538123e-02	ci right 6.070477e-02	k: 1740	n:30000
KS ci ratio: 1.159137e-02	ci left: 7.875639e-01	ci right 7.967794e-01	k: 23766	n:30000
ASPHD1   30000 perm   6 sec   (5338 perm/sec)   p_kst 7.922000e-01   p_cons 5.800000e-02   p_joint 8.080000e-02

Outputting figure to mutsig2_images.part000000000012/ASPHD1.2_1185_30000_0.7922_0.058_0.0808.png
                gene_name: ASPHD1
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.084 

Current progress: 91 percent done.
ASPHD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.653285e-02	ci left: 4.053188e-01	ci right 4.247308e-01	k: 4150	n:10000
Cons ci ratio: 4.742576e-02	ci left: 3.961543e-01	ci right 4.155006e-01	k: 4058	n:10000
KS ci ratio: 4.367280e-02	ci left: 4.363242e-01	ci right 4.559072e-01	k: 4461	n:10000
ASPHD2   10000 perm   2 sec   (6597 perm/sec)   p_kst 4.461000e-01   p_cons 4.058000e-01   p_joint 4.150000e-01

Outputting figure to mutsig2_images.part000000000012/ASPHD2.2_1122_10000_0.4461_0.4058_0.415.png
                gene_name: ASPHD2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 93 percent done.
ASPSCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.864254e-02	ci left: 6.424702e-01	ci right 6.612413e-01	k: 6519	n:10000
Cons ci ratio: 6.567074e-02	ci left: 2.539954e-01	ci right 2.713431e-01	k: 2626	n:10000
KS ci ratio: 9.871639e-02	ci left: 1.294361e-01	ci right 1.429766e-01	k: 1361	n:10000
ASPSCR1   10000 perm   2 sec   (6130 perm/sec)   p_kst 1.361000e-01   p_cons 2.626000e-01   p_joint 6.519000e-01

Outputting figure to mutsig2_images.part000000000012/ASPSCR1.2_1726_10000_0.1361_0.2626_0.6519.png
                gene_name: ASPSCR1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 95 percent done.
ASS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.046065e-02	ci left: 7.777276e-01	ci right 7.939056e-01	k: 7859	n:10000
KS ci ratio: 4.907736e-02	ci left: 3.798263e-01	ci right 3.990382e-01	k: 3894	n:10000
ASS1   10000 perm   2 sec   (6244 perm/sec)   p_kst 3.894000e-01   p_cons 7.859000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000012/ASS1.2_1295_10000_0.3894_0.7859_1.png
                gene_name: ASS1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
ATF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.246508e-02	ci left: 4.501944e-01	ci right 4.698289e-01	k: 4600	n:10000
Cons ci ratio: 1.738284e-02	ci left: 8.282899e-01	ci right 8.429141e-01	k: 8357	n:10000
KS ci ratio: 1.576830e-01	ci left: 5.359424e-02	ci right 6.286520e-02	k: 581	n:10000
ATF1   10000 perm   1 sec   (7136 perm/sec)   p_kst 5.810000e-02   p_cons 8.357000e-01   p_joint 4.600000e-01

Joint ci ratio: 6.870783e-03	ci left: 9.388247e-01	ci right 9.453461e-01	k: 18843	n:20000
Cons ci ratio: 1.237586e-02	ci left: 8.285674e-01	ci right 8.389354e-01	k: 16676	n:20000
KS ci ratio: 1.096623e-01	ci left: 5.674781e-02	ci right 6.338081e-02	k: 1200	n:20000
ATF1   20000 perm   4 sec   (5392 perm/sec)   p_kst 6.000000e-02   p_cons 8.338000e-01   p_joint 9.421500e-01

Joint ci ratio: 7.409966e-03	ci left: 8.997982e-01	ci right 9.065234e-01	k: 27096	n:30000
Cons ci ratio: 1.015811e-02	ci left: 8.280573e-01	ci right 8.365449e-01	k: 24970	n:30000
KS ci ratio: 9.145886e-02	ci left: 5.505507e-02	ci right 6.036432e-02	k: 1730	n:30000
ATF1   30000 perm   6 sec   (4779 perm/sec)   p_kst 5.766667e-02   p_cons 8.323333e-01   p_joint 9.032000e-01

Outputting figure to mutsig2_images.part000000000012/ATF1.2_840_30000_0.057667_0.83233_0.9032.png
                gene_name: ATF1
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 98 percent done.
ATG4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.810553e-02	ci left: 8.165953e-01	ci right 8.316154e-01	k: 8242	n:10000
Cons ci ratio: 6.350447e-02	ci left: 2.670569e-01	ci right 2.846738e-01	k: 2758	n:10000
KS ci ratio: 5.504455e-02	ci left: 3.271384e-01	ci right 3.457570e-01	k: 3364	n:10000
ATG4A   10000 perm   2 sec   (6111 perm/sec)   p_kst 3.364000e-01   p_cons 2.758000e-01   p_joint 8.242000e-01

Outputting figure to mutsig2_images.part000000000012/ATG4A.2_1249_10000_0.3364_0.2758_0.8242.png
                gene_name: ATG4A
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000012
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 12 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1532>
Subject: Job 9893832: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1532>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000013> was used as the working directory.
Started at Fri Oct  5 23:53:46 2012
Results reported at Sat Oct  6 00:06:13 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000013.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000013.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 13  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000013.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    798.56 sec.
    Max Memory :      3684 MB
    Max Swap   :      5976 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
13
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 13
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 13: processing genes 1083 - 1172
Calculating significance of each gene.
Using projection method.
1083	ATG7	9.583411e-01
1084	ATG9A	8.824740e-01
1085	ATG9B	9.667689e-01
1086	ATHL1	8.736720e-01
1087	ATIC	3.392112e-01
1088	ATL1	3.668285e-01
1089	ATL2	8.329584e-01
1090	ATL3	8.955477e-01
In gene ATM the following bins exceed PROBCAP:
    COAD-AA-3678	categ 6	N = 9418    n = 1	mu =   2.96e-07
    READ-AG-3727	categ 6	N = 9418    n = 1	mu =   2.96e-07
1091	ATM	4.373799e-06
1092	ATMIN	9.283037e-01
1093	ATN1	6.872152e-01
1094	ATOH1	8.981934e-01
1095	ATOH7	1
1096	ATOH8	8.700807e-01
1097	ATOX1	1
In gene ATP10A the following bins exceed PROBCAP:
    COAD-AA-A00K	categ 6	N = 4137    n = 1	mu =   5.86e-07
    READ-AG-3608	categ 6	N = 4137    n = 1	mu =   1.38e-07
1098	ATP10A	7.202050e-05
1099	ATP10B	9.681966e-01
1100	ATP10D	1.428905e-01
1101	ATP11A	2.585350e-01
1102	ATP11B	7.601608e-01
1103	ATP11C	3.705589e-02
1104	ATP12A	1.064342e-02
1105	ATP13A1	9.978750e-01
1106	ATP13A2	9.407585e-01
1107	ATP13A3	9.828293e-01
1108	ATP13A4	4.408610e-01
1109	ATP13A5	8.348792e-02
1110	ATP1A1	6.829183e-01
1111	ATP1A2	5.165490e-01
1112	ATP1A3	9.461192e-01
1113	ATP1A4	5.241103e-01
1114	ATP1B1	6.710981e-01
1115	ATP1B2	8.189840e-01
1116	ATP1B3	1
1117	ATP1B4	4.343750e-01
1118	ATP2A1	8.522866e-01
1119	ATP2A2	5.923155e-01
1120	ATP2A3	8.799956e-01
1121	ATP2B1	5.693793e-01
1122	ATP2B2	1.020291e-01
1123	ATP2B3	7.191239e-01
1124	ATP2B4	8.119739e-01
1125	ATP2C1	6.048979e-01
1126	ATP2C2	9.308385e-01
1127	ATP4A	1.275935e-01
1128	ATP4B	7.025367e-01
1129	ATP5A1	2.389072e-01
1130	ATP5B	2.141105e-01
1131	ATP5C1	2.624505e-01
1132	ATP5D	3.435115e-01
1133	ATP5E	1
1134	ATP5F1	6.909394e-01
1135	ATP5G1	1
1136	ATP5G2	1
1137	ATP5G3	4.766773e-01
1138	ATP5H	1
1139	ATP5I	1
1140	ATP5J	1
1141	ATP5J2	3.463028e-01
1142	ATP5L	6.996298e-02
1143	ATP5O	2.586147e-01
1144	ATP5S	5.111656e-01
1145	ATP5SL	5.997838e-01
1146	ATP6AP1	6.841721e-01
1147	ATP6AP1L	4.226302e-01
1148	ATP6AP2	1.632963e-01
1149	ATP6V0A1	8.138049e-01
1150	ATP6V0A2	8.176823e-01
1151	ATP6V0A4	3.867550e-01
1152	ATP6V0B	6.898860e-01
1153	ATP6V0C	1
1154	ATP6V0D1	8.039172e-01
1155	ATP6V0D2	7.921041e-04
1156	ATP6V0E1	1
1157	ATP6V0E2	1
1158	ATP6V1A	7.557728e-01
1159	ATP6V1B1	1.412633e-01
1160	ATP6V1B2	6.675580e-01
1161	ATP6V1C1	3.243231e-01
1162	ATP6V1C2	3.828195e-01
1163	ATP6V1D	1
1164	ATP6V1E1	6.438090e-01
1165	ATP6V1E2	2.899299e-02
1166	ATP6V1F	1
1167	ATP6V1G1	1
1168	ATP6V1G2	2.677584e-01
1169	ATP6V1G3	7.565606e-02
1170	ATP6V1H	3.427163e-01
1171	ATP7A	1.332281e-04
1172	ATP7B	9.671396e-01
Done

Running MutSig 2:
Scatter job 13: processing genes 1083 - 1172
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ATM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.333011e-02	ci left: 2.681458e-01	ci right 2.857843e-01	k: 2769	n:10000
Cons ci ratio: 8.757768e-02	ci left: 1.595411e-01	ci right 1.742535e-01	k: 1668	n:10000
KS ci ratio: 6.687871e-02	ci left: 2.470728e-01	ci right 2.642697e-01	k: 2556	n:10000
ATM   10000 perm   5 sec   (2026 perm/sec)   p_kst 2.556000e-01   p_cons 1.668000e-01   p_joint 2.769000e-01

Outputting figure to mutsig2_images.part000000000013/ATM.37_9419_10000_0.2556_0.1668_0.2769.png
                gene_name: ATM
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 2 percent done.
ATP10A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.625735e-01	ci left: 1.893425e-02	ci right 2.474894e-02	k: 217	n:10000
Cons ci ratio: 3.198987e-02	ci left: 5.905209e-01	ci right 6.098207e-01	k: 6002	n:10000
KS ci ratio: 3.960612e-01	ci left: 7.782754e-03	ci right 1.171078e-02	k: 96	n:10000
ATP10A   10000 perm   3 sec   (3433 perm/sec)   p_kst 9.600000e-03   p_cons 6.002000e-01   p_joint 2.170000e-02

Joint ci ratio: 1.761951e-01	ci left: 2.201898e-02	ci right 2.632088e-02	k: 482	n:20000
Cons ci ratio: 2.340024e-02	ci left: 5.769818e-01	ci right 5.906938e-01	k: 11677	n:20000
KS ci ratio: 2.744071e-01	ci left: 8.714222e-03	ci right 1.153094e-02	k: 201	n:20000
ATP10A   20000 perm   6 sec   (3135 perm/sec)   p_kst 1.005000e-02   p_cons 5.838500e-01   p_joint 2.410000e-02

Joint ci ratio: 1.248785e-01	ci left: 2.981089e-02	ci right 3.381379e-02	k: 953	n:30000
Cons ci ratio: 1.925045e-02	ci left: 5.745911e-01	ci right 5.857933e-01	k: 17406	n:30000
KS ci ratio: 2.214841e-01	ci left: 9.188445e-03	ci right 1.150785e-02	k: 309	n:30000
ATP10A   30000 perm   11 sec   (2704 perm/sec)   p_kst 1.030000e-02   p_cons 5.802000e-01   p_joint 3.176667e-02

Joint ci ratio: 1.232245e-01	ci left: 2.315256e-02	ci right 2.621697e-02	k: 986	n:40000
Cons ci ratio: 1.708138e-02	ci left: 5.634537e-01	ci right 5.731863e-01	k: 22733	n:40000
KS ci ratio: 1.898110e-01	ci left: 9.548085e-03	ci right 1.157391e-02	k: 421	n:40000
ATP10A   40000 perm   16 sec   (2566 perm/sec)   p_kst 1.052500e-02   p_cons 5.683250e-01   p_joint 2.465000e-02

Joint ci ratio: 1.165594e-01	ci left: 2.082924e-02	ci right 2.342666e-02	k: 1105	n:50000
Cons ci ratio: 1.522233e-02	ci left: 5.657667e-01	ci right 5.744651e-01	k: 28506	n:50000
KS ci ratio: 1.711719e-01	ci left: 9.490989e-03	ci right 1.128654e-02	k: 518	n:50000
ATP10A   50000 perm   20 sec   (2469 perm/sec)   p_kst 1.036000e-02   p_cons 5.701200e-01   p_joint 2.210000e-02

Joint ci ratio: 1.130848e-01	ci left: 1.852197e-02	ci right 2.075817e-02	k: 1177	n:60000
Cons ci ratio: 1.390231e-02	ci left: 5.659269e-01	ci right 5.738663e-01	k: 34194	n:60000
KS ci ratio: 1.556030e-01	ci left: 9.651741e-03	ci right 1.129613e-02	k: 627	n:60000
ATP10A   60000 perm   24 sec   (2465 perm/sec)   p_kst 1.045000e-02   p_cons 5.699000e-01   p_joint 1.961667e-02

Joint ci ratio: 8.391895e-02	ci left: 2.895858e-02	ci right 3.150913e-02	k: 2115	n:70000
Cons ci ratio: 1.287033e-02	ci left: 5.662510e-01	ci right 5.736003e-01	k: 39895	n:70000
KS ci ratio: 1.423683e-01	ci left: 9.951016e-03	ci right 1.148995e-02	k: 749	n:70000
ATP10A   70000 perm   29 sec   (2398 perm/sec)   p_kst 1.070000e-02   p_cons 5.699286e-01   p_joint 3.021429e-02

Joint ci ratio: 8.228252e-02	ci left: 2.645119e-02	ci right 2.873325e-02	k: 2206	n:80000
Cons ci ratio: 1.201405e-02	ci left: 5.675115e-01	ci right 5.743833e-01	k: 45676	n:80000
KS ci ratio: 1.347022e-01	ci left: 9.768969e-03	ci right 1.119187e-02	k: 837	n:80000
ATP10A   80000 perm   34 sec   (2359 perm/sec)   p_kst 1.046250e-02   p_cons 5.709500e-01   p_joint 2.757500e-02

Joint ci ratio: 8.366419e-02	ci left: 2.281399e-02	ci right 2.481687e-02	k: 2142	n:90000
Cons ci ratio: 1.134201e-02	ci left: 5.670581e-01	ci right 5.735374e-01	k: 51327	n:90000
KS ci ratio: 1.273231e-01	ci left: 9.758236e-03	ci right 1.109582e-02	k: 937	n:90000
ATP10A   90000 perm   39 sec   (2325 perm/sec)   p_kst 1.041111e-02   p_cons 5.703000e-01   p_joint 2.380000e-02

Joint ci ratio: 7.771686e-02	ci left: 2.384493e-02	ci right 2.578277e-02	k: 2480	n:100000
Cons ci ratio: 1.075494e-02	ci left: 5.674550e-01	ci right 5.736009e-01	k: 57053	n:100000
KS ci ratio: 1.206270e-01	ci left: 9.819261e-03	ci right 1.108937e-02	k: 1044	n:100000
ATP10A   100000 perm   43 sec   (2335 perm/sec)   p_kst 1.044000e-02   p_cons 5.705300e-01   p_joint 2.480000e-02

Joint ci ratio: 7.745609e-02	ci left: 2.187245e-02	ci right 2.364374e-02	k: 2502	n:110000
Cons ci ratio: 1.025222e-02	ci left: 5.677049e-01	ci right 5.735641e-01	k: 62770	n:110000
KS ci ratio: 1.147364e-01	ci left: 9.897197e-03	ci right 1.111064e-02	k: 1154	n:110000
ATP10A   110000 perm   47 sec   (2338 perm/sec)   p_kst 1.049091e-02   p_cons 5.706364e-01   p_joint 2.274545e-02

Joint ci ratio: 7.497099e-02	ci left: 2.143924e-02	ci right 2.311730e-02	k: 2672	n:120000
Cons ci ratio: 9.830185e-03	ci left: 5.671097e-01	ci right 5.727203e-01	k: 68390	n:120000
KS ci ratio: 1.100727e-01	ci left: 9.882334e-03	ci right 1.104151e-02	k: 1254	n:120000
ATP10A   120000 perm   51 sec   (2332 perm/sec)   p_kst 1.045000e-02   p_cons 5.699167e-01   p_joint 2.226667e-02

Joint ci ratio: 7.516597e-02	ci left: 1.972147e-02	ci right 2.126925e-02	k: 2663	n:130000
Cons ci ratio: 9.449163e-03	ci left: 5.669801e-01	ci right 5.723707e-01	k: 74058	n:130000
KS ci ratio: 1.054251e-01	ci left: 9.967988e-03	ci right 1.108478e-02	k: 1367	n:130000
ATP10A   130000 perm   56 sec   (2313 perm/sec)   p_kst 1.051538e-02   p_cons 5.696769e-01   p_joint 2.048462e-02

Joint ci ratio: 7.126045e-02	ci left: 2.040266e-02	ci right 2.191726e-02	k: 2961	n:140000
Cons ci ratio: 9.094942e-03	ci left: 5.676447e-01	ci right 5.728381e-01	k: 79834	n:140000
KS ci ratio: 1.021251e-01	ci left: 9.882139e-03	ci right 1.095257e-02	k: 1457	n:140000
ATP10A   140000 perm   62 sec   (2275 perm/sec)   p_kst 1.040714e-02   p_cons 5.702429e-01   p_joint 2.115000e-02

Joint ci ratio: 6.741036e-02	ci left: 2.130295e-02	ci right 2.279560e-02	k: 3306	n:150000
Cons ci ratio: 8.790908e-03	ci left: 5.674900e-01	ci right 5.725073e-01	k: 85500	n:150000
KS ci ratio: 9.831757e-02	ci left: 9.970804e-03	ci right 1.100825e-02	k: 1572	n:150000
ATP10A   150000 perm   67 sec   (2239 perm/sec)   p_kst 1.048000e-02   p_cons 5.700000e-01   p_joint 2.204000e-02

Outputting figure to mutsig2_images.part000000000013/ATP10A.21_4584_150000_0.01048_0.57_0.02204.png
                gene_name: ATP10A
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0100 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 3 percent done.
ATP12A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.338240e-02	ci left: 4.396164e-01	ci right 4.592131e-01	k: 4494	n:10000
Cons ci ratio: 3.663624e-02	ci left: 5.238638e-01	ci right 5.435165e-01	k: 5337	n:10000
KS ci ratio: 7.499060e-02	ci left: 2.064889e-01	ci right 2.226777e-01	k: 2145	n:10000
ATP12A   10000 perm   2 sec   (4217 perm/sec)   p_kst 2.145000e-01   p_cons 5.337000e-01   p_joint 4.494000e-01

Outputting figure to mutsig2_images.part000000000013/ATP12A.18_3230_10000_0.2145_0.5337_0.4494.png
                gene_name: ATP12A
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 5 percent done.
ATP10D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.282739e-02	ci left: 3.456147e-01	ci right 3.644699e-01	k: 3550	n:10000
Cons ci ratio: 8.464158e-02	ci left: 1.690728e-01	ci right 1.841161e-01	k: 1765	n:10000
KS ci ratio: 3.179695e-02	ci left: 5.934319e-01	ci right 6.127080e-01	k: 6031	n:10000
ATP10D   10000 perm   3 sec   (3116 perm/sec)   p_kst 6.031000e-01   p_cons 1.765000e-01   p_joint 3.550000e-01

Outputting figure to mutsig2_images.part000000000013/ATP10D.12_4369_10000_0.6031_0.1765_0.355.png
                gene_name: ATP10D
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 7 percent done.
ATP2B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.511784e-02	ci left: 5.448942e-01	ci right 5.644739e-01	k: 5547	n:10000
Cons ci ratio: 8.469983e-02	ci left: 1.688761e-01	ci right 1.839129e-01	k: 1763	n:10000
KS ci ratio: 1.742710e-02	ci left: 8.275777e-01	ci right 8.422267e-01	k: 8350	n:10000
ATP2B2   10000 perm   2 sec   (4318 perm/sec)   p_kst 8.350000e-01   p_cons 1.763000e-01   p_joint 5.547000e-01

Outputting figure to mutsig2_images.part000000000013/ATP2B2.11_3820_10000_0.835_0.1763_0.5547.png
                gene_name: ATP2B2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 9 percent done.
ATP11C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.067928e-02	ci left: 7.740800e-01	ci right 7.903553e-01	k: 7823	n:10000
Cons ci ratio: 6.565505e-03	ci left: 9.694208e-01	ci right 9.758999e-01	k: 9728	n:10000
KS ci ratio: 3.662888e-02	ci left: 5.239639e-01	ci right 5.436164e-01	k: 5338	n:10000
ATP11C   10000 perm   2 sec   (4246 perm/sec)   p_kst 5.338000e-01   p_cons 9.728000e-01   p_joint 7.823000e-01

Outputting figure to mutsig2_images.part000000000013/ATP11C.10_3582_10000_0.5338_0.9728_0.7823.png
                gene_name: ATP11C
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 10 percent done.
ATP4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.637034e-02	ci left: 4.070126e-01	ci right 4.264360e-01	k: 4167	n:10000
KS ci ratio: 1.979647e-02	ci left: 7.887776e-01	ci right 8.046492e-01	k: 7968	n:10000
ATP4A   10000 perm   2 sec   (4549 perm/sec)   p_kst 7.968000e-01   p_cons 4.167000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP4A.10_3196_10000_0.7968_0.4167_1.png
                gene_name: ATP4A
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
ATP13A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.175058e-02	ci left: 7.561585e-01	ci right 7.728871e-01	k: 7646	n:10000
Cons ci ratio: 8.770970e-03	ci left: 9.480432e-01	ci right 9.564908e-01	k: 9524	n:10000
KS ci ratio: 3.935905e-02	ci left: 4.880521e-01	ci right 5.077491e-01	k: 4979	n:10000
ATP13A5   10000 perm   3 sec   (3612 perm/sec)   p_kst 4.979000e-01   p_cons 9.524000e-01   p_joint 7.646000e-01

Outputting figure to mutsig2_images.part000000000013/ATP13A5.9_3777_10000_0.4979_0.9524_0.7646.png
                gene_name: ATP13A5
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 14 percent done.
ATP1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.311543e-01	ci left: 7.659787e-02	ci right 8.744709e-02	k: 819	n:10000
Cons ci ratio: 3.301551e-01	ci left: 1.160595e-02	ci right 1.628351e-02	k: 138	n:10000
KS ci ratio: 2.146053e-02	ci left: 7.610165e-01	ci right 7.776263e-01	k: 7694	n:10000
ATP1A2   10000 perm   2 sec   (4299 perm/sec)   p_kst 7.694000e-01   p_cons 1.380000e-02   p_joint 8.190000e-02

Joint ci ratio: 8.625504e-02	ci left: 8.954852e-02	ci right 9.767008e-02	k: 1871	n:20000
Cons ci ratio: 2.405811e-01	ci left: 1.152325e-02	ci right 1.472062e-02	k: 261	n:20000
KS ci ratio: 1.511928e-02	ci left: 7.648098e-01	ci right 7.765114e-01	k: 15414	n:20000
ATP1A2   20000 perm   5 sec   (3897 perm/sec)   p_kst 7.707000e-01   p_cons 1.305000e-02   p_joint 9.355000e-02

Joint ci ratio: 7.325396e-02	ci left: 8.393256e-02	ci right 9.034766e-02	k: 2613	n:30000
Cons ci ratio: 1.992804e-01	ci left: 1.146358e-02	ci right 1.403207e-02	k: 381	n:30000
KS ci ratio: 1.237161e-02	ci left: 7.651281e-01	ci right 7.746863e-01	k: 23098	n:30000
ATP1A2   30000 perm   8 sec   (3721 perm/sec)   p_kst 7.699333e-01   p_cons 1.270000e-02   p_joint 8.710000e-02

Joint ci ratio: 7.761260e-02	ci left: 5.761854e-02	ci right 6.229559e-02	k: 2397	n:40000
Cons ci ratio: 1.738547e-01	ci left: 1.145814e-02	ci right 1.366347e-02	k: 501	n:40000
KS ci ratio: 1.108517e-02	ci left: 7.534196e-01	ci right 7.618430e-01	k: 30306	n:40000
ATP1A2   40000 perm   11 sec   (3610 perm/sec)   p_kst 7.576500e-01   p_cons 1.252500e-02   p_joint 5.992500e-02

Joint ci ratio: 6.371262e-02	ci left: 6.813326e-02	ci right 7.263677e-02	k: 3518	n:50000
Cons ci ratio: 1.576127e-01	ci left: 1.125617e-02	ci right 1.320107e-02	k: 610	n:50000
KS ci ratio: 9.925408e-03	ci left: 7.534771e-01	ci right 7.610130e-01	k: 37863	n:50000
ATP1A2   50000 perm   14 sec   (3506 perm/sec)   p_kst 7.572600e-01   p_cons 1.220000e-02   p_joint 7.036000e-02

Joint ci ratio: 5.866213e-02	ci left: 6.723112e-02	ci right 7.131066e-02	k: 4155	n:60000
Cons ci ratio: 1.447017e-01	ci left: 1.120836e-02	ci right 1.297264e-02	k: 724	n:60000
KS ci ratio: 8.822505e-03	ci left: 7.635125e-01	ci right 7.702950e-01	k: 46015	n:60000
ATP1A2   60000 perm   17 sec   (3440 perm/sec)   p_kst 7.669167e-01   p_cons 1.206667e-02   p_joint 6.925000e-02

Joint ci ratio: 5.319149e-02	ci left: 7.008165e-02	ci right 7.392535e-02	k: 5039	n:70000
Cons ci ratio: 1.350905e-01	ci left: 1.108223e-02	ci right 1.270147e-02	k: 831	n:70000
KS ci ratio: 8.144280e-03	ci left: 7.648118e-01	ci right 7.710803e-01	k: 53757	n:70000
ATP1A2   70000 perm   21 sec   (3335 perm/sec)   p_kst 7.679571e-01   p_cons 1.187143e-02   p_joint 7.198571e-02

Joint ci ratio: 5.203613e-02	ci left: 6.451130e-02	ci right 6.797023e-02	k: 5298	n:80000
Cons ci ratio: 1.272392e-01	ci left: 1.097846e-02	ci right 1.248226e-02	k: 937	n:80000
KS ci ratio: 7.621368e-03	ci left: 7.648707e-01	ci right 7.707348e-01	k: 61425	n:80000
ATP1A2   80000 perm   25 sec   (3264 perm/sec)   p_kst 7.678125e-01   p_cons 1.171250e-02   p_joint 6.622500e-02

Joint ci ratio: 5.491174e-02	ci left: 5.211546e-02	ci right 5.506895e-02	k: 4822	n:90000
Cons ci ratio: 1.192921e-01	ci left: 1.114786e-02	ci right 1.257276e-02	k: 1066	n:90000
KS ci ratio: 7.183059e-03	ci left: 7.651612e-01	ci right 7.706882e-01	k: 69114	n:90000
ATP1A2   90000 perm   28 sec   (3168 perm/sec)   p_kst 7.679333e-01   p_cons 1.184444e-02   p_joint 5.357778e-02

Joint ci ratio: 5.159669e-02	ci left: 5.316026e-02	ci right 5.598565e-02	k: 5456	n:100000
Cons ci ratio: 1.132457e-01	ci left: 1.116906e-02	ci right 1.251947e-02	k: 1183	n:100000
KS ci ratio: 6.822350e-03	ci left: 7.648892e-01	ci right 7.701353e-01	k: 76752	n:100000
ATP1A2   100000 perm   33 sec   (3057 perm/sec)   p_kst 7.675200e-01   p_cons 1.183000e-02   p_joint 5.456000e-02

Joint ci ratio: 4.448173e-02	ci left: 6.447671e-02	ci right 6.741896e-02	k: 7253	n:110000
Cons ci ratio: 1.078249e-01	ci left: 1.123215e-02	ci right 1.252105e-02	k: 1305	n:110000
KS ci ratio: 6.501575e-03	ci left: 7.651928e-01	ci right 7.701930e-01	k: 84447	n:110000
ATP1A2   110000 perm   37 sec   (3004 perm/sec)   p_kst 7.677000e-01   p_cons 1.186364e-02   p_joint 6.593636e-02

Joint ci ratio: 4.653043e-02	ci left: 5.454085e-02	ci right 5.714733e-02	k: 6700	n:120000
Cons ci ratio: 1.038159e-01	ci left: 1.113172e-02	ci right 1.235871e-02	k: 1408	n:120000
KS ci ratio: 6.220712e-03	ci left: 7.655342e-01	ci right 7.703195e-01	k: 92152	n:120000
ATP1A2   120000 perm   41 sec   (2955 perm/sec)   p_kst 7.679333e-01   p_cons 1.173333e-02   p_joint 5.583333e-02

Joint ci ratio: 4.608764e-02	ci left: 5.149917e-02	ci right 5.393621e-02	k: 6852	n:130000
Cons ci ratio: 9.936237e-02	ci left: 1.124257e-02	ci right 1.242551e-02	k: 1537	n:130000
KS ci ratio: 5.970518e-03	ci left: 7.659967e-01	ci right 7.705914e-01	k: 99879	n:130000
ATP1A2   130000 perm   45 sec   (2897 perm/sec)   p_kst 7.683000e-01   p_cons 1.182308e-02   p_joint 5.270769e-02

Outputting figure to mutsig2_images.part000000000013/ATP1A2.9_3155_130000_0.7683_0.011823_0.052708.png
                gene_name: ATP1A2
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.054 

Current progress: 16 percent done.
ATP2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.697687e-03	ci left: 9.376532e-01	ci right 9.468871e-01	k: 9424	n:10000
Cons ci ratio: 1.226434e-02	ci left: 9.051459e-01	ci right 9.164135e-01	k: 9109	n:10000
KS ci ratio: 2.360957e-02	ci left: 7.250203e-01	ci right 7.424434e-01	k: 7338	n:10000
ATP2B1   10000 perm   2 sec   (4050 perm/sec)   p_kst 7.338000e-01   p_cons 9.109000e-01   p_joint 9.424000e-01

Outputting figure to mutsig2_images.part000000000013/ATP2B1.9_3901_10000_0.7338_0.9109_0.9424.png
                gene_name: ATP2B1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 17 percent done.
ATP6V0D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.208994e-02	ci left: 9.075108e-01	ci right 9.186472e-01	k: 9132	n:10000
Cons ci ratio: 5.473782e-02	ci left: 3.296208e-01	ci right 3.482731e-01	k: 3389	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ATP6V0D2   10000 perm   2 sec   (5045 perm/sec)   p_kst 1   p_cons 3.389000e-01   p_joint 9.132000e-01

Outputting figure to mutsig2_images.part000000000013/ATP6V0D2.9_1085_10000_1_0.3389_0.9132.png
                gene_name: ATP6V0D2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 19 percent done.
ATP11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.033297e-02	ci left: 9.300936e-01	ci right 9.398511e-01	k: 9351	n:10000
Cons ci ratio: 8.357525e-03	ci left: 9.524213e-01	ci right 9.605100e-01	k: 9566	n:10000
KS ci ratio: 3.075105e-02	ci left: 6.093982e-01	ci right 6.285324e-01	k: 6190	n:10000
ATP11A   10000 perm   2 sec   (4145 perm/sec)   p_kst 6.190000e-01   p_cons 9.566000e-01   p_joint 9.351000e-01

Outputting figure to mutsig2_images.part000000000013/ATP11A.8_3774_10000_0.619_0.9566_0.9351.png
                gene_name: ATP11A
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 21 percent done.
ATP13A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.516236e-02	ci left: 8.631486e-01	ci right 8.764352e-01	k: 8699	n:10000
Cons ci ratio: 2.506374e-02	ci left: 7.007944e-01	ci right 7.186833e-01	k: 7098	n:10000
KS ci ratio: 1.988809e-02	ci left: 7.872564e-01	ci right 8.031712e-01	k: 7953	n:10000
ATP13A4   10000 perm   2 sec   (4118 perm/sec)   p_kst 7.953000e-01   p_cons 7.098000e-01   p_joint 8.699000e-01

Outputting figure to mutsig2_images.part000000000013/ATP13A4.8_3711_10000_0.7953_0.7098_0.8699.png
                gene_name: ATP13A4
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 22 percent done.
ATP1A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.137362e-02	ci left: 5.998573e-01	ci right 6.190789e-01	k: 6095	n:10000
Cons ci ratio: 6.757094e-02	ci left: 2.432172e-01	ci right 2.603276e-01	k: 2517	n:10000
KS ci ratio: 1.602799e-02	ci left: 8.497808e-01	ci right 8.636107e-01	k: 8568	n:10000
ATP1A4   10000 perm   2 sec   (5045 perm/sec)   p_kst 8.568000e-01   p_cons 2.517000e-01   p_joint 6.095000e-01

Outputting figure to mutsig2_images.part000000000013/ATP1A4.8_3178_10000_0.8568_0.2517_0.6095.png
                gene_name: ATP1A4
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 24 percent done.
ATP2B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.076659e-03	ci left: 9.960741e-01	ci right 9.982200e-01	k: 9973	n:10000
KS ci ratio: 1.467656e-02	ci left: 8.705050e-01	ci right 8.834745e-01	k: 8771	n:10000
ATP2B4   10000 perm   2 sec   (4724 perm/sec)   p_kst 8.771000e-01   p_cons 9.973000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP2B4.8_3880_10000_0.8771_0.9973_1.png
                gene_name: ATP2B4
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
ATP6V0A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.103187e-01	ci left: 1.058826e-01	ci right 1.183444e-01	k: 1120	n:10000
Cons ci ratio: 9.183970e-02	ci left: 1.469770e-01	ci right 1.612251e-01	k: 1540	n:10000
KS ci ratio: 8.760919e-02	ci left: 1.594429e-01	ci right 1.741517e-01	k: 1667	n:10000
ATP6V0A4   10000 perm   2 sec   (4603 perm/sec)   p_kst 1.667000e-01   p_cons 1.540000e-01   p_joint 1.120000e-01

Joint ci ratio: 6.920250e-02	ci left: 1.334449e-01	ci right 1.430605e-01	k: 2764	n:20000
Cons ci ratio: 6.587906e-02	ci left: 1.454227e-01	ci right 1.553792e-01	k: 3007	n:20000
KS ci ratio: 6.233159e-02	ci left: 1.599291e-01	ci right 1.702684e-01	k: 3301	n:20000
ATP6V0A4   20000 perm   5 sec   (4184 perm/sec)   p_kst 1.650500e-01   p_cons 1.503500e-01   p_joint 1.382000e-01

Outputting figure to mutsig2_images.part000000000013/ATP6V0A4.7_2603_20000_0.16505_0.15035_0.1382.png
                gene_name: ATP6V0A4
               theta_stop: 0.069 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 28 percent done.
ATP11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.512443e-02	ci left: 4.202683e-01	ci right 4.397725e-01	k: 4300	n:10000
Cons ci ratio: 1.262686e-01	ci left: 8.232386e-02	ci right 9.351756e-02	k: 878	n:10000
KS ci ratio: 1.436189e-02	ci left: 8.752086e-01	ci right 8.879681e-01	k: 8817	n:10000
ATP11B   10000 perm   3 sec   (3294 perm/sec)   p_kst 8.817000e-01   p_cons 8.780000e-02   p_joint 4.300000e-01

Joint ci ratio: 3.880499e-02	ci left: 3.312442e-01	ci right 3.444030e-01	k: 6756	n:20000
Cons ci ratio: 8.617888e-02	ci left: 8.969559e-02	ci right 9.782296e-02	k: 1874	n:20000
KS ci ratio: 1.064695e-02	ci left: 8.667323e-01	ci right 8.760594e-01	k: 17429	n:20000
ATP11B   20000 perm   6 sec   (3285 perm/sec)   p_kst 8.714500e-01   p_cons 9.370000e-02   p_joint 3.378000e-01

Outputting figure to mutsig2_images.part000000000013/ATP11B.6_3654_20000_0.87145_0.0937_0.3378.png
                gene_name: ATP11B
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 29 percent done.
ATP2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.622758e-02	ci left: 4.085072e-01	ci right 4.279405e-01	k: 4182	n:10000
Cons ci ratio: 3.081627e-02	ci left: 6.083937e-01	ci right 6.275375e-01	k: 6180	n:10000
KS ci ratio: 5.690767e-02	ci left: 3.125475e-01	ci right 3.309565e-01	k: 3217	n:10000
ATP2A1   10000 perm   3 sec   (3352 perm/sec)   p_kst 3.217000e-01   p_cons 6.180000e-01   p_joint 4.182000e-01

Outputting figure to mutsig2_images.part000000000013/ATP2A1.6_3103_10000_0.3217_0.618_0.4182.png
                gene_name: ATP2A1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 31 percent done.
ATP2A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.940915e-02	ci left: 3.766417e-01	ci right 3.958246e-01	k: 3862	n:10000
Cons ci ratio: 2.494214e-02	ci left: 7.028121e-01	ci right 7.206644e-01	k: 7118	n:10000
KS ci ratio: 5.585553e-02	ci left: 3.206853e-01	ci right 3.392138e-01	k: 3299	n:10000
ATP2A2   10000 perm   3 sec   (3981 perm/sec)   p_kst 3.299000e-01   p_cons 7.118000e-01   p_joint 3.862000e-01

Outputting figure to mutsig2_images.part000000000013/ATP2A2.6_3227_10000_0.3299_0.7118_0.3862.png
                gene_name: ATP2A2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 33 percent done.
ATP7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.820443e-02	ci left: 2.397579e-01	ci right 2.567890e-01	k: 2482	n:10000
Cons ci ratio: 1.120715e-01	ci left: 1.028590e-01	ci right 1.151698e-01	k: 1089	n:10000
KS ci ratio: 3.961964e-02	ci left: 4.847535e-01	ci right 5.044496e-01	k: 4946	n:10000
ATP7A   10000 perm   2 sec   (4428 perm/sec)   p_kst 4.946000e-01   p_cons 1.089000e-01   p_joint 2.482000e-01

Joint ci ratio: 3.620443e-02	ci left: 3.628050e-01	ci right 3.762329e-01	k: 7390	n:20000
Cons ci ratio: 8.066715e-02	ci left: 1.013242e-01	ci right 1.098908e-01	k: 2111	n:20000
KS ci ratio: 2.762244e-02	ci left: 4.947457e-01	ci right 5.086538e-01	k: 10034	n:20000
ATP7A   20000 perm   5 sec   (4004 perm/sec)   p_kst 5.017000e-01   p_cons 1.055500e-01   p_joint 3.695000e-01

Outputting figure to mutsig2_images.part000000000013/ATP7A.6_4591_20000_0.5017_0.10555_0.3695.png
                gene_name: ATP7A
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 34 percent done.
ATP1A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.631413e-02	ci left: 8.452954e-01	ci right 8.592987e-01	k: 8524	n:10000
KS ci ratio: 1.617132e-02	ci left: 8.475379e-01	ci right 8.614549e-01	k: 8546	n:10000
ATP1A3   10000 perm   2 sec   (4714 perm/sec)   p_kst 8.546000e-01   p_cons 8.524000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP1A3.5_3134_10000_0.8546_0.8524_1.png
                gene_name: ATP1A3
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
ATP5A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.287501e-02	ci left: 1.441328e-01	ci right 1.582710e-01	k: 1511	n:10000
Cons ci ratio: 6.937534e-02	ci left: 2.335329e-01	ci right 2.504177e-01	k: 2419	n:10000
KS ci ratio: 1.052060e-01	ci left: 1.154507e-01	ci right 1.283705e-01	k: 1218	n:10000
ATP5A1   10000 perm   2 sec   (5402 perm/sec)   p_kst 1.218000e-01   p_cons 2.419000e-01   p_joint 1.511000e-01

Joint ci ratio: 6.515406e-02	ci left: 1.482339e-01	ci right 1.582671e-01	k: 3064	n:20000
Cons ci ratio: 4.980994e-02	ci left: 2.305253e-01	ci right 2.423514e-01	k: 4728	n:20000
KS ci ratio: 7.488375e-02	ci left: 1.159695e-01	ci right 1.250412e-01	k: 2409	n:20000
ATP5A1   20000 perm   4 sec   (4799 perm/sec)   p_kst 1.204500e-01   p_cons 2.364000e-01   p_joint 1.532000e-01

Outputting figure to mutsig2_images.part000000000013/ATP5A1.5_1710_20000_0.12045_0.2364_0.1532.png
                gene_name: ATP5A1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 38 percent done.
ATP6V1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.868988e-02	ci left: 8.070450e-01	ci right 8.223712e-01	k: 8148	n:10000
KS ci ratio: 1.851635e-02	ci left: 8.098890e-01	ci right 8.251256e-01	k: 8176	n:10000
ATP6V1B1   10000 perm   2 sec   (5095 perm/sec)   p_kst 8.176000e-01   p_cons 8.148000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP6V1B1.5_1598_10000_0.8176_0.8148_1.png
                gene_name: ATP6V1B1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
ATIC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.083585e-02	ci left: 6.080924e-01	ci right 6.272390e-01	k: 6177	n:10000
Cons ci ratio: 6.382384e-02	ci left: 2.650773e-01	ci right 2.826547e-01	k: 2738	n:10000
KS ci ratio: 2.934637e-02	ci left: 6.313068e-01	ci right 6.502111e-01	k: 6408	n:10000
ATIC   10000 perm   2 sec   (4923 perm/sec)   p_kst 6.408000e-01   p_cons 2.738000e-01   p_joint 6.177000e-01

Outputting figure to mutsig2_images.part000000000013/ATIC.4_1843_10000_0.6408_0.2738_0.6177.png
                gene_name: ATIC
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 41 percent done.
ATL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.775184e-02	ci left: 6.567594e-01	ci right 6.753438e-01	k: 6661	n:10000
Cons ci ratio: 2.443237e-02	ci left: 7.112884e-01	ci right 7.289832e-01	k: 7202	n:10000
KS ci ratio: 4.370816e-02	ci left: 4.359251e-01	ci right 4.555065e-01	k: 4457	n:10000
ATL1   10000 perm   2 sec   (5041 perm/sec)   p_kst 4.457000e-01   p_cons 7.202000e-01   p_joint 6.661000e-01

Outputting figure to mutsig2_images.part000000000013/ATL1.4_1733_10000_0.4457_0.7202_0.6661.png
                gene_name: ATL1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 43 percent done.
ATMIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.774183e-02	ci left: 3.929674e-01	ci right 4.122893e-01	k: 4026	n:10000
Cons ci ratio: 2.470529e-02	ci left: 7.067471e-01	ci right 7.245272e-01	k: 7157	n:10000
KS ci ratio: 7.041197e-02	ci left: 2.281991e-01	ci right 2.449546e-01	k: 2365	n:10000
ATMIN   10000 perm   2 sec   (5373 perm/sec)   p_kst 2.365000e-01   p_cons 7.157000e-01   p_joint 4.026000e-01

Outputting figure to mutsig2_images.part000000000013/ATMIN.4_2488_10000_0.2365_0.7157_0.4026.png
                gene_name: ATMIN
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 45 percent done.
ATN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.173850e-02	ci left: 7.563609e-01	ci right 7.730846e-01	k: 7648	n:10000
Cons ci ratio: 2.553891e-02	ci left: 6.929276e-01	ci right 7.109546e-01	k: 7020	n:10000
KS ci ratio: 4.376126e-02	ci left: 4.353266e-01	ci right 4.549054e-01	k: 4451	n:10000
ATN1   10000 perm   2 sec   (4427 perm/sec)   p_kst 4.451000e-01   p_cons 7.020000e-01   p_joint 7.648000e-01

Outputting figure to mutsig2_images.part000000000013/ATN1.4_3609_10000_0.4451_0.702_0.7648.png
                gene_name: ATN1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 47 percent done.
ATP1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.230204e-02	ci left: 9.046320e-01	ci right 9.159277e-01	k: 9104	n:10000
Cons ci ratio: 8.246439e-03	ci left: 9.535696e-01	ci right 9.615610e-01	k: 9577	n:10000
KS ci ratio: 3.871119e-02	ci left: 4.963503e-01	ci right 5.160461e-01	k: 5062	n:10000
ATP1A1   10000 perm   3 sec   (3722 perm/sec)   p_kst 5.062000e-01   p_cons 9.577000e-01   p_joint 9.104000e-01

Outputting figure to mutsig2_images.part000000000013/ATP1A1.4_3180_10000_0.5062_0.9577_0.9104.png
                gene_name: ATP1A1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 48 percent done.
ATP2A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.776711e-02	ci left: 1.589518e-01	ci right 1.736431e-01	k: 1662	n:10000
Cons ci ratio: 2.173503e-01	ci left: 2.806894e-02	ci right 3.500749e-02	k: 314	n:10000
KS ci ratio: 2.336799e-02	ci left: 7.290610e-01	ci right 7.464003e-01	k: 7378	n:10000
ATP2A3   10000 perm   2 sec   (4728 perm/sec)   p_kst 7.378000e-01   p_cons 3.140000e-02   p_joint 1.662000e-01

Joint ci ratio: 5.538456e-02	ci left: 1.947227e-01	ci right 2.058646e-01	k: 4005	n:20000
Cons ci ratio: 1.560097e-01	ci left: 2.820837e-02	ci right 3.302937e-02	k: 611	n:20000
KS ci ratio: 1.642355e-02	ci left: 7.340125e-01	ci right 7.462177e-01	k: 14803	n:20000
ATP2A3   20000 perm   5 sec   (3769 perm/sec)   p_kst 7.401500e-01   p_cons 3.055000e-02   p_joint 2.002500e-01

Joint ci ratio: 4.710696e-02	ci left: 1.830970e-01	ci right 1.919636e-01	k: 5625	n:30000
Cons ci ratio: 1.266724e-01	ci left: 2.897069e-02	ci right 3.292083e-02	k: 927	n:30000
KS ci ratio: 1.336510e-02	ci left: 7.364388e-01	ci right 7.463810e-01	k: 22243	n:30000
ATP2A3   30000 perm   9 sec   (3499 perm/sec)   p_kst 7.414333e-01   p_cons 3.090000e-02   p_joint 1.875000e-01

Joint ci ratio: 4.458998e-02	ci left: 1.583023e-01	ci right 1.655469e-01	k: 6476	n:40000
Cons ci ratio: 1.088575e-01	ci left: 2.968819e-02	ci right 3.313028e-02	k: 1255	n:40000
KS ci ratio: 1.156121e-02	ci left: 7.375566e-01	ci right 7.461583e-01	k: 29675	n:40000
ATP2A3   40000 perm   12 sec   (3407 perm/sec)   p_kst 7.418750e-01   p_cons 3.137500e-02   p_joint 1.619000e-01

Joint ci ratio: 4.353980e-02	ci left: 1.364543e-01	ci right 1.425476e-01	k: 6974	n:50000
Cons ci ratio: 9.778409e-02	ci left: 2.961526e-02	ci right 3.267949e-02	k: 1556	n:50000
KS ci ratio: 1.075620e-02	ci left: 7.225698e-01	ci right 7.304039e-01	k: 36325	n:50000
ATP2A3   50000 perm   15 sec   (3350 perm/sec)   p_kst 7.265000e-01   p_cons 3.112000e-02   p_joint 1.394800e-01

Outputting figure to mutsig2_images.part000000000013/ATP2A3.4_3295_50000_0.7265_0.03112_0.13948.png
                gene_name: ATP2A3
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 50 percent done.
ATP2B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.389372e-02	ci left: 3.365732e-01	ci right 3.553166e-01	k: 3459	n:10000
Cons ci ratio: 3.118285e-02	ci left: 6.027694e-01	ci right 6.219651e-01	k: 6124	n:10000
KS ci ratio: 9.208707e-02	ci left: 1.462904e-01	ci right 1.605121e-01	k: 1533	n:10000
ATP2B3   10000 perm   2 sec   (4167 perm/sec)   p_kst 1.533000e-01   p_cons 6.124000e-01   p_joint 3.459000e-01

Outputting figure to mutsig2_images.part000000000013/ATP2B3.4_3901_10000_0.1533_0.6124_0.3459.png
                gene_name: ATP2B3
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 52 percent done.
ATP2C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.962205e-02	ci left: 2.322487e-01	ci right 2.491027e-01	k: 2406	n:10000
Cons ci ratio: 5.247176e-02	ci left: 3.486956e-01	ci right 3.675871e-01	k: 3581	n:10000
KS ci ratio: 1.061502e-01	ci left: 1.135945e-01	ci right 1.264278e-01	k: 1199	n:10000
ATP2C1   10000 perm   2 sec   (4810 perm/sec)   p_kst 1.199000e-01   p_cons 3.581000e-01   p_joint 2.406000e-01

Joint ci ratio: 6.239950e-02	ci left: 1.596329e-01	ci right 1.699647e-01	k: 3295	n:20000
Cons ci ratio: 3.704259e-02	ci left: 3.522480e-01	ci right 3.655930e-01	k: 7178	n:20000
KS ci ratio: 7.416821e-02	ci left: 1.179862e-01	ci right 1.271238e-01	k: 2450	n:20000
ATP2C1   20000 perm   5 sec   (4093 perm/sec)   p_kst 1.225000e-01   p_cons 3.589000e-01   p_joint 1.647500e-01

Outputting figure to mutsig2_images.part000000000013/ATP2C1.4_2968_20000_0.1225_0.3589_0.16475.png
                gene_name: ATP2C1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 53 percent done.
ATP5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.049610e-01	ci left: 1.159392e-01	ci right 1.288817e-01	k: 1223	n:10000
Cons ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
KS ci ratio: 7.982246e-02	ci left: 1.864866e-01	ci right 2.020919e-01	k: 1942	n:10000
ATP5B   10000 perm   2 sec   (5185 perm/sec)   p_kst 1.942000e-01   p_cons 5.170000e-02   p_joint 1.223000e-01

Joint ci ratio: 7.150001e-02	ci left: 1.259590e-01	ci right 1.353487e-01	k: 2612	n:20000
Cons ci ratio: 1.150598e-01	ci left: 5.168573e-02	ci right 5.804447e-02	k: 1096	n:20000
KS ci ratio: 5.748321e-02	ci left: 1.831990e-01	ci right 1.940916e-01	k: 3772	n:20000
ATP5B   20000 perm   5 sec   (4193 perm/sec)   p_kst 1.886000e-01   p_cons 5.480000e-02   p_joint 1.306000e-01

Joint ci ratio: 5.854749e-02	ci left: 1.261808e-01	ci right 1.338243e-01	k: 3899	n:30000
Cons ci ratio: 9.484952e-02	ci left: 5.130611e-02	ci right 5.644738e-02	k: 1615	n:30000
KS ci ratio: 4.752329e-02	ci left: 1.804550e-01	ci right 1.892728e-01	k: 5545	n:30000
ATP5B   30000 perm   8 sec   (3963 perm/sec)   p_kst 1.848333e-01   p_cons 5.383333e-02   p_joint 1.299667e-01

Outputting figure to mutsig2_images.part000000000013/ATP5B.4_1630_30000_0.18483_0.053833_0.12997.png
                gene_name: ATP5B
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 55 percent done.
ATP5C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.848410e-02	ci left: 3.855995e-01	ci right 4.048615e-01	k: 3952	n:10000
Cons ci ratio: 2.971815e-01	ci left: 1.455775e-02	ci right 1.972903e-02	k: 170	n:10000
KS ci ratio: 1.320071e-02	ci left: 8.921069e-01	ci right 9.040601e-01	k: 8982	n:10000
ATP5C1   10000 perm   2 sec   (5153 perm/sec)   p_kst 8.982000e-01   p_cons 1.700000e-02   p_joint 3.952000e-01

Joint ci ratio: 2.534290e-02	ci left: 5.377171e-01	ci right 5.515699e-01	k: 10893	n:20000
Cons ci ratio: 2.139961e-01	ci left: 1.473272e-02	ci right 1.830984e-02	k: 329	n:20000
KS ci ratio: 9.269086e-03	ci left: 8.951989e-01	ci right 9.035846e-01	k: 17989	n:20000
ATP5C1   20000 perm   5 sec   (4287 perm/sec)   p_kst 8.994500e-01   p_cons 1.645000e-02   p_joint 5.446500e-01

Joint ci ratio: 1.746047e-02	ci left: 6.213652e-01	ci right 6.323436e-01	k: 18806	n:30000
Cons ci ratio: 1.719246e-01	ci left: 1.556744e-02	ci right 1.852716e-02	k: 510	n:30000
KS ci ratio: 7.523815e-03	ci left: 8.970573e-01	ci right 9.038650e-01	k: 27015	n:30000
ATP5C1   30000 perm   8 sec   (3772 perm/sec)   p_kst 9.005000e-01   p_cons 1.700000e-02   p_joint 6.268667e-01

Joint ci ratio: 2.229572e-02	ci left: 4.310328e-01	ci right 4.407765e-01	k: 17436	n:40000
Cons ci ratio: 1.471795e-01	ci left: 1.614124e-02	ci right 1.872950e-02	k: 696	n:40000
KS ci ratio: 6.561903e-03	ci left: 8.962334e-01	ci right 9.021585e-01	k: 35969	n:40000
ATP5C1   40000 perm   11 sec   (3728 perm/sec)   p_kst 8.992250e-01   p_cons 1.740000e-02   p_joint 4.359000e-01

Joint ci ratio: 2.452214e-02	ci left: 3.340527e-01	ci right 3.423661e-01	k: 16910	n:50000
Cons ci ratio: 1.303720e-01	ci left: 1.660101e-02	ci right 1.893546e-02	k: 887	n:50000
KS ci ratio: 5.898317e-03	ci left: 8.956377e-01	ci right 9.009559e-01	k: 44916	n:50000
ATP5C1   50000 perm   14 sec   (3632 perm/sec)   p_kst 8.983200e-01   p_cons 1.774000e-02   p_joint 3.382000e-01

Joint ci ratio: 1.790726e-02	ci left: 4.400355e-01	ci right 4.480032e-01	k: 26641	n:60000
Cons ci ratio: 1.189335e-01	ci left: 1.672469e-02	ci right 1.885565e-02	k: 1066	n:60000
KS ci ratio: 5.366751e-03	ci left: 8.964770e-01	ci right 9.013176e-01	k: 53935	n:60000
ATP5C1   60000 perm   17 sec   (3559 perm/sec)   p_kst 8.989167e-01   p_cons 1.776667e-02   p_joint 4.440167e-01

Joint ci ratio: 1.755437e-02	ci left: 4.123451e-01	ci right 4.196619e-01	k: 29120	n:70000
Cons ci ratio: 1.099688e-01	ci left: 1.684727e-02	ci right 1.882156e-02	k: 1247	n:70000
KS ci ratio: 4.987401e-03	ci left: 8.959651e-01	ci right 9.004590e-01	k: 62876	n:70000
ATP5C1   70000 perm   20 sec   (3580 perm/sec)   p_kst 8.982286e-01   p_cons 1.781429e-02   p_joint 4.160000e-01

Joint ci ratio: 1.652247e-02	ci left: 4.095850e-01	ci right 4.164213e-01	k: 33040	n:80000
Cons ci ratio: 1.023665e-01	ci left: 1.707779e-02	ci right 1.893240e-02	k: 1439	n:80000
KS ci ratio: 4.672048e-03	ci left: 8.958442e-01	ci right 9.000518e-01	k: 71837	n:80000
ATP5C1   80000 perm   22 sec   (3602 perm/sec)   p_kst 8.979625e-01   p_cons 1.798750e-02   p_joint 4.130000e-01

Joint ci ratio: 1.810835e-02	ci left: 3.392884e-01	ci right 3.454996e-01	k: 30815	n:90000
Cons ci ratio: 7.675218e-02	ci left: 2.708452e-02	ci right 2.925714e-02	k: 2534	n:90000
KS ci ratio: 4.401526e-03	ci left: 8.961052e-01	ci right 9.000691e-01	k: 80829	n:90000
ATP5C1   90000 perm   25 sec   (3609 perm/sec)   p_kst 8.981000e-01   p_cons 2.815556e-02   p_joint 3.423889e-01

Outputting figure to mutsig2_images.part000000000013/ATP5C1.4_941_90000_0.8981_0.028156_0.34239.png
                gene_name: ATP5C1
               theta_stop: 0.077 
                    nperm: 90000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 57 percent done.
ATP7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.509535e-02	ci left: 8.641699e-01	ci right 8.774133e-01	k: 8709	n:10000
KS ci ratio: 2.955702e-02	ci left: 6.279891e-01	ci right 6.469308e-01	k: 6375	n:10000
ATP7B   10000 perm   2 sec   (4452 perm/sec)   p_kst 6.375000e-01   p_cons 8.709000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP7B.4_4482_10000_0.6375_0.8709_1.png
                gene_name: ATP7B
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
ATG9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.714896e-02	ci left: 6.665257e-01	ci right 6.849718e-01	k: 6758	n:10000
Cons ci ratio: 2.038162e-02	ci left: 7.790450e-01	ci right 7.951874e-01	k: 7872	n:10000
KS ci ratio: 3.389067e-02	ci left: 5.624330e-01	ci right 5.819249e-01	k: 5722	n:10000
ATG9A   10000 perm   2 sec   (5519 perm/sec)   p_kst 5.722000e-01   p_cons 7.872000e-01   p_joint 6.758000e-01

Outputting figure to mutsig2_images.part000000000013/ATG9A.3_2576_10000_0.5722_0.7872_0.6758.png
                gene_name: ATG9A
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 60 percent done.
ATP10B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.580538e-02	ci left: 8.532484e-01	ci right 8.669411e-01	k: 8602	n:10000
KS ci ratio: 3.854894e-02	ci left: 4.984503e-01	ci right 5.181449e-01	k: 5083	n:10000
ATP10B   10000 perm   2 sec   (4576 perm/sec)   p_kst 5.083000e-01   p_cons 8.602000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP10B.3_4474_10000_0.5083_0.8602_1.png
                gene_name: ATP10B
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
ATP13A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.535597e-02	ci left: 6.959529e-01	ci right 7.139275e-01	k: 7050	n:10000
Cons ci ratio: 7.672327e-02	ci left: 1.989967e-01	ci right 2.149743e-01	k: 2069	n:10000
KS ci ratio: 1.720538e-02	ci left: 8.311391e-01	ci right 8.456632e-01	k: 8385	n:10000
ATP13A2   10000 perm   2 sec   (4401 perm/sec)   p_kst 8.385000e-01   p_cons 2.069000e-01   p_joint 7.050000e-01

Outputting figure to mutsig2_images.part000000000013/ATP13A2.3_3895_10000_0.8385_0.2069_0.705.png
                gene_name: ATP13A2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 64 percent done.
ATP1B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.567918e-02	ci left: 3.220751e-01	ci right 3.406233e-01	k: 3313	n:10000
Cons ci ratio: 1.003866e-01	ci left: 1.256193e-01	ci right 1.389957e-01	k: 1322	n:10000
KS ci ratio: 2.177474e-02	ci left: 7.557537e-01	ci right 7.724921e-01	k: 7642	n:10000
ATP1B4   10000 perm   2 sec   (5433 perm/sec)   p_kst 7.642000e-01   p_cons 1.322000e-01   p_joint 3.313000e-01

Joint ci ratio: 3.241031e-02	ci left: 4.155411e-01	ci right 4.292814e-01	k: 8448	n:20000
Cons ci ratio: 7.107820e-02	ci left: 1.272883e-01	ci right 1.367189e-01	k: 2639	n:20000
KS ci ratio: 1.530951e-02	ci left: 7.603212e-01	ci right 7.721013e-01	k: 15325	n:20000
ATP1B4   20000 perm   4 sec   (4832 perm/sec)   p_kst 7.662500e-01   p_cons 1.319500e-01   p_joint 4.224000e-01

Outputting figure to mutsig2_images.part000000000013/ATP1B4.3_1106_20000_0.76625_0.13195_0.4224.png
                gene_name: ATP1B4
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 66 percent done.
ATP6AP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.409930e-02	ci left: 7.168405e-01	ci right 7.344279e-01	k: 7257	n:10000
Cons ci ratio: 3.380769e-02	ci left: 5.636361e-01	ci right 5.831211e-01	k: 5734	n:10000
KS ci ratio: 3.847191e-02	ci left: 4.994504e-01	ci right 5.191442e-01	k: 5093	n:10000
ATP6AP2   10000 perm   2 sec   (4533 perm/sec)   p_kst 5.093000e-01   p_cons 5.734000e-01   p_joint 7.257000e-01

Outputting figure to mutsig2_images.part000000000013/ATP6AP2.3_1089_10000_0.5093_0.5734_0.7257.png
                gene_name: ATP6AP2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 67 percent done.
ATP6V0A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.157234e-02	ci left: 1.798919e-01	ci right 1.952906e-01	k: 1875	n:10000
Cons ci ratio: 6.952695e-02	ci left: 2.327426e-01	ci right 2.496084e-01	k: 2411	n:10000
KS ci ratio: 7.272974e-02	ci left: 2.168465e-01	ci right 2.333139e-01	k: 2250	n:10000
ATP6V0A1   10000 perm   2 sec   (4183 perm/sec)   p_kst 2.250000e-01   p_cons 2.411000e-01   p_joint 1.875000e-01

Outputting figure to mutsig2_images.part000000000013/ATP6V0A1.3_2619_10000_0.225_0.2411_0.1875.png
                gene_name: ATP6V0A1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 69 percent done.
ATP6V1E2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.633479e-02	ci left: 6.798232e-01	ci right 6.980666e-01	k: 6890	n:10000
Cons ci ratio: 5.358556e-02	ci left: 3.391561e-01	ci right 3.579322e-01	k: 3485	n:10000
KS ci ratio: 4.391342e-03	ci left: 9.853418e-01	ci right 9.897674e-01	k: 9877	n:10000
ATP6V1E2   10000 perm   2 sec   (4422 perm/sec)   p_kst 9.877000e-01   p_cons 3.485000e-01   p_joint 6.890000e-01

Outputting figure to mutsig2_images.part000000000013/ATP6V1E2.3_685_10000_0.9877_0.3485_0.689.png
                gene_name: ATP6V1E2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 71 percent done.
ATP6V1H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.440974e-01	ci left: 6.391519e-02	ci right 7.393770e-02	k: 688	n:10000
Cons ci ratio: 1.585526e-01	ci left: 5.301669e-02	ci right 6.224312e-02	k: 575	n:10000
KS ci ratio: 1.564030e-01	ci left: 5.446081e-02	ci right 6.379808e-02	k: 590	n:10000
ATP6V1H   10000 perm   2 sec   (5483 perm/sec)   p_kst 5.900000e-02   p_cons 5.750000e-02   p_joint 6.880000e-02

Joint ci ratio: 1.303669e-01	ci left: 4.042395e-02	ci right 4.610980e-02	k: 864	n:20000
Cons ci ratio: 1.118587e-01	ci left: 5.460525e-02	ci right 6.112403e-02	k: 1156	n:20000
KS ci ratio: 1.071230e-01	ci left: 5.937901e-02	ci right 6.614879e-02	k: 1254	n:20000
ATP6V1H   20000 perm   4 sec   (4642 perm/sec)   p_kst 6.270000e-02   p_cons 5.780000e-02   p_joint 4.320000e-02

Joint ci ratio: 1.184857e-01	ci left: 3.311072e-02	ci right 3.731324e-02	k: 1055	n:30000
Cons ci ratio: 9.098567e-02	ci left: 5.560955e-02	ci right 6.094306e-02	k: 1747	n:30000
KS ci ratio: 8.593007e-02	ci left: 6.207259e-02	ci right 6.767871e-02	k: 1945	n:30000
ATP6V1H   30000 perm   7 sec   (4360 perm/sec)   p_kst 6.483333e-02   p_cons 5.823333e-02   p_joint 3.516667e-02

Joint ci ratio: 1.173801e-01	ci left: 2.553066e-02	ci right 2.873849e-02	k: 1084	n:40000
Cons ci ratio: 7.937034e-02	ci left: 5.518927e-02	ci right 5.977524e-02	k: 2298	n:40000
KS ci ratio: 7.452032e-02	ci left: 6.228388e-02	ci right 6.712954e-02	k: 2587	n:40000
ATP6V1H   40000 perm   10 sec   (4137 perm/sec)   p_kst 6.467500e-02   p_cons 5.745000e-02   p_joint 2.710000e-02

Joint ci ratio: 1.045238e-01	ci left: 2.592813e-02	ci right 2.880710e-02	k: 1367	n:50000
Cons ci ratio: 7.072714e-02	ci left: 5.582922e-02	ci right 5.994230e-02	k: 2893	n:50000
KS ci ratio: 6.664213e-02	ci left: 6.255911e-02	ci right 6.689159e-02	k: 3235	n:50000
ATP6V1H   50000 perm   12 sec   (4021 perm/sec)   p_kst 6.470000e-02   p_cons 5.786000e-02   p_joint 2.734000e-02

Joint ci ratio: 9.883058e-02	ci left: 2.428584e-02	ci right 2.682700e-02	k: 1532	n:60000
Cons ci ratio: 6.446442e-02	ci left: 5.617560e-02	ci right 5.993395e-02	k: 3482	n:60000
KS ci ratio: 6.141440e-02	ci left: 6.162727e-02	ci right 6.554841e-02	k: 3814	n:60000
ATP6V1H   60000 perm   16 sec   (3841 perm/sec)   p_kst 6.356667e-02   p_cons 5.803333e-02   p_joint 2.553333e-02

Outputting figure to mutsig2_images.part000000000013/ATP6V1H.3_1504_60000_0.063567_0.058033_0.025533.png
                gene_name: ATP6V1H
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.027 

Current progress: 72 percent done.
ATL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.485289e-02	ci left: 8.678477e-01	ci right 8.809333e-01	k: 8745	n:10000
Cons ci ratio: 2.921266e-02	ci left: 6.334184e-01	ci right 6.522983e-01	k: 6429	n:10000
KS ci ratio: 6.210389e-02	ci left: 2.759680e-01	ci right 2.937575e-01	k: 2848	n:10000
ATL2   10000 perm   2 sec   (5831 perm/sec)   p_kst 2.848000e-01   p_cons 6.429000e-01   p_joint 8.745000e-01

Outputting figure to mutsig2_images.part000000000013/ATL2.2_1916_10000_0.2848_0.6429_0.8745.png
                gene_name: ATL2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 74 percent done.
ATP13A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.624268e-02	ci left: 6.813348e-01	ci right 6.995541e-01	k: 6905	n:10000
Cons ci ratio: 7.289692e-02	ci left: 2.160571e-01	ci right 2.325038e-01	k: 2242	n:10000
KS ci ratio: 4.971267e-02	ci left: 3.737560e-01	ci right 3.929120e-01	k: 3833	n:10000
ATP13A1   10000 perm   2 sec   (4735 perm/sec)   p_kst 3.833000e-01   p_cons 2.242000e-01   p_joint 6.905000e-01

Outputting figure to mutsig2_images.part000000000013/ATP13A1.2_3719_10000_0.3833_0.2242_0.6905.png
                gene_name: ATP13A1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 76 percent done.
ATP13A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.008940e-02	ci left: 7.839105e-01	ci right 7.999191e-01	k: 7920	n:10000
Cons ci ratio: 1.254161e-02	ci left: 9.013439e-01	ci right 9.128177e-01	k: 9072	n:10000
KS ci ratio: 3.954049e-02	ci left: 4.857530e-01	ci right 5.054495e-01	k: 4956	n:10000
ATP13A3   10000 perm   3 sec   (3747 perm/sec)   p_kst 4.956000e-01   p_cons 9.072000e-01   p_joint 7.920000e-01

Outputting figure to mutsig2_images.part000000000013/ATP13A3.2_3805_10000_0.4956_0.9072_0.792.png
                gene_name: ATP13A3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 78 percent done.
ATP1B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.271941e-02	ci left: 8.988792e-01	ci right 9.104838e-01	k: 9048	n:10000
KS ci ratio: 2.782673e-02	ci left: 6.555515e-01	ci right 6.741524e-01	k: 6649	n:10000
ATP1B2   10000 perm   2 sec   (5726 perm/sec)   p_kst 6.649000e-01   p_cons 9.048000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP1B2.2_901_10000_0.6649_0.9048_1.png
                gene_name: ATP1B2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
ATP2C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.266730e-02	ci left: 5.803855e-01	ci right 5.997620e-01	k: 5901	n:10000
KS ci ratio: 1.938620e-02	ci left: 7.955742e-01	ci right 8.112487e-01	k: 8035	n:10000
ATP2C2   10000 perm   2 sec   (5459 perm/sec)   p_kst 8.035000e-01   p_cons 5.901000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP2C2.2_2949_10000_0.8035_0.5901_1.png
                gene_name: ATP2C2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
ATP5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.130045e-02	ci left: 2.237558e-01	ci right 2.404006e-01	k: 2320	n:10000
KS ci ratio: 2.359145e-02	ci left: 7.253233e-01	ci right 7.427402e-01	k: 7341	n:10000
ATP5L   10000 perm   2 sec   (6305 perm/sec)   p_kst 7.341000e-01   p_cons 2.320000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP5L.2_324_10000_0.7341_0.232_1.png
                gene_name: ATP5L
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
ATP5O
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.847161e-02	ci left: 1.918044e-01	ci right 2.075710e-01	k: 1996	n:10000
Cons ci ratio: 1.245670e-01	ci left: 8.446093e-02	ci right 9.577916e-02	k: 900	n:10000
KS ci ratio: 6.105377e-02	ci left: 2.829019e-01	ci right 3.008195e-01	k: 2918	n:10000
ATP5O   10000 perm   2 sec   (6542 perm/sec)   p_kst 2.918000e-01   p_cons 9.000000e-02   p_joint 1.996000e-01

Joint ci ratio: 2.594917e-02	ci left: 5.259561e-01	ci right 5.398343e-01	k: 10658	n:20000
Cons ci ratio: 7.453255e-02	ci left: 1.169532e-01	ci right 1.260571e-01	k: 2429	n:20000
KS ci ratio: 4.301560e-02	ci left: 2.870454e-01	ci right 2.997147e-01	k: 5867	n:20000
ATP5O   20000 perm   4 sec   (5701 perm/sec)   p_kst 2.933500e-01   p_cons 1.214500e-01   p_joint 5.329000e-01

Outputting figure to mutsig2_images.part000000000013/ATP5O.2_670_20000_0.29335_0.12145_0.5329.png
                gene_name: ATP5O
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.54 

Current progress: 84 percent done.
ATP6AP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.136983e-02	ci left: 7.625349e-01	ci right 7.791070e-01	k: 7709	n:10000
Cons ci ratio: 2.097639e-02	ci left: 7.691165e-01	ci right 7.855216e-01	k: 7774	n:10000
KS ci ratio: 4.799080e-02	ci left: 3.904780e-01	ci right 4.097802e-01	k: 4001	n:10000
ATP6AP1   10000 perm   2 sec   (6040 perm/sec)   p_kst 4.001000e-01   p_cons 7.774000e-01   p_joint 7.709000e-01

Outputting figure to mutsig2_images.part000000000013/ATP6AP1.2_1453_10000_0.4001_0.7774_0.7709.png
                gene_name: ATP6AP1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 86 percent done.
ATP6V0A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.877516e-02	ci left: 6.403578e-01	ci right 6.591549e-01	k: 6498	n:10000
KS ci ratio: 2.298170e-02	ci left: 7.355281e-01	ci right 7.527294e-01	k: 7442	n:10000
ATP6V0A2   10000 perm   2 sec   (4981 perm/sec)   p_kst 7.442000e-01   p_cons 6.498000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP6V0A2.2_2651_10000_0.7442_0.6498_1.png
                gene_name: ATP6V0A2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
ATP6V0D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.587792e-02	ci left: 4.121944e-01	ci right 4.316511e-01	k: 4219	n:10000
Cons ci ratio: 4.043641e-02	ci left: 4.745607e-01	ci right 4.942484e-01	k: 4844	n:10000
KS ci ratio: 5.928515e-02	ci left: 2.950918e-01	ci right 3.132224e-01	k: 3041	n:10000
ATP6V0D1   10000 perm   2 sec   (6512 perm/sec)   p_kst 3.041000e-01   p_cons 4.844000e-01   p_joint 4.219000e-01

Outputting figure to mutsig2_images.part000000000013/ATP6V0D1.2_1088_10000_0.3041_0.4844_0.4219.png
                gene_name: ATP6V0D1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 90 percent done.
ATP6V1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.788029e-02	ci left: 8.202549e-01	ci right 8.351537e-01	k: 8278	n:10000
Cons ci ratio: 9.472752e-02	ci left: 1.392311e-01	ci right 1.531757e-01	k: 1461	n:10000
KS ci ratio: 6.555229e-02	ci left: 2.546878e-01	ci right 2.720503e-01	k: 2633	n:10000
ATP6V1A   10000 perm   2 sec   (5128 perm/sec)   p_kst 2.633000e-01   p_cons 1.461000e-01   p_joint 8.278000e-01

Outputting figure to mutsig2_images.part000000000013/ATP6V1A.2_1910_10000_0.2633_0.1461_0.8278.png
                gene_name: ATP6V1A
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 91 percent done.
ATP6V1B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.751552e-02	ci left: 8.261534e-01	ci right 8.408517e-01	k: 8336	n:10000
Cons ci ratio: 2.264985e-02	ci left: 7.410878e-01	ci right 7.581666e-01	k: 7497	n:10000
KS ci ratio: 3.587043e-02	ci left: 5.343769e-01	ci right 5.539974e-01	k: 5442	n:10000
ATP6V1B2   10000 perm   2 sec   (5742 perm/sec)   p_kst 5.442000e-01   p_cons 7.497000e-01   p_joint 8.336000e-01

Outputting figure to mutsig2_images.part000000000013/ATP6V1B2.2_1592_10000_0.5442_0.7497_0.8336.png
                gene_name: ATP6V1B2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 93 percent done.
ATP6V1C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.051047e-02	ci left: 3.662946e-01	ci right 3.853777e-01	k: 3758	n:10000
KS ci ratio: 2.640239e-02	ci left: 6.787147e-01	ci right 6.969757e-01	k: 6879	n:10000
ATP6V1C1   10000 perm   2 sec   (6263 perm/sec)   p_kst 6.879000e-01   p_cons 3.758000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP6V1C1.2_1197_10000_0.6879_0.3758_1.png
                gene_name: ATP6V1C1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
ATP6V1C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.159885e-03	ci left: 9.437779e-01	ci right 9.525587e-01	k: 9483	n:10000
KS ci ratio: 2.823983e-02	ci left: 6.489092e-01	ci right 6.675985e-01	k: 6583	n:10000
ATP6V1C2   10000 perm   2 sec   (5908 perm/sec)   p_kst 6.583000e-01   p_cons 9.483000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP6V1C2.2_1336_10000_0.6583_0.9483_1.png
                gene_name: ATP6V1C2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
ATP6V1G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.027488e-02	ci left: 4.765590e-01	ci right 4.962490e-01	k: 4864	n:10000
KS ci ratio: 2.975552e-02	ci left: 6.248728e-01	ci right 6.438489e-01	k: 6344	n:10000
ATP6V1G2   10000 perm   2 sec   (5890 perm/sec)   p_kst 6.344000e-01   p_cons 4.864000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP6V1G2.2_369_10000_0.6344_0.4864_1.png
                gene_name: ATP6V1G2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
ATP6V1G3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.988199e-02	ci left: 7.873578e-01	ci right 8.032698e-01	k: 7954	n:10000
KS ci ratio: 7.642078e-02	ci left: 2.002780e-01	ci right 2.162923e-01	k: 2082	n:10000
ATP6V1G3   10000 perm   2 sec   (5032 perm/sec)   p_kst 2.082000e-01   p_cons 7.954000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000013/ATP6V1G3.2_419_10000_0.2082_0.7954_1.png
                gene_name: ATP6V1G3
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000013
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 13 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1711>
Subject: Job 9893835: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1711>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000014> was used as the working directory.
Started at Fri Oct  5 23:53:46 2012
Results reported at Sat Oct  6 00:03:38 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000014.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000014.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 14  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000014.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    584.58 sec.
    Max Memory :      3596 MB
    Max Swap   :      5977 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
14
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 14
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 14: processing genes 1173 - 1262
Calculating significance of each gene.
Using projection method.
1173	ATP8A1	7.070697e-01
1174	ATP8A2	1.711208e-01
In gene ATP8B1 the following bins exceed PROBCAP:
    READ-AG-3605	categ 6	N = 3743    n = 1	mu =   1.38e-07
1175	ATP8B1	1.844999e-01
1176	ATP8B2	9.380001e-01
1177	ATP8B3	9.996189e-01
1178	ATP8B4	7.794433e-02
1179	ATP9A	3.426261e-01
1180	ATP9B	4.495403e-01
1181	ATPAF1	3.312416e-01
1182	ATPAF2	1
1183	ATPBD4	4.009945e-01
1184	ATPIF1	1
1185	ATR	4.502260e-01
1186	ATRIP	9.134326e-01
1187	ATRN	6.631435e-02
1188	ATRNL1	5.375310e-02
1189	ATRX	5.362020e-02
1190	ATXN1	1.201218e-01
1191	ATXN10	7.309963e-01
1192	ATXN2	6.033324e-01
1193	ATXN2L	7.038711e-01
1194	ATXN3	7.406654e-01
1195	ATXN3L	1.746494e-02
1196	ATXN7	8.420298e-01
1197	ATXN7L2	6.553533e-01
1198	ATXN7L3	7.708100e-01
1199	AUH	6.532517e-01
1200	AUP1	9.227302e-01
1201	AURKA	4.637062e-01
1202	AURKAIP1	1
1203	AURKB	8.701587e-01
1204	AURKC	1.211880e-03
1205	AUTS2	7.659373e-01
1206	AVEN	6.740669e-01
1207	AVIL	5.964575e-01
1208	AVL9	5.739823e-01
1209	AVP	1
1210	AVPI1	1.338278e-01
1211	AVPR1A	5.758576e-01
1212	AVPR1B	4.116413e-01
1213	AVPR2	8.353034e-02
1214	AWAT1	7.395846e-02
1215	AWAT2	4.869743e-01
1216	AXIN1	7.869972e-01
1217	AXIN2	4.705781e-02
1218	AXL	5.776366e-01
1219	AZGP1	3.573843e-01
1220	AZI1	1
1221	AZI2	4.719324e-01
1222	AZIN1	5.478706e-01
1223	AZU1	1
1224	B2M	1.424360e-04
1225	B3GALNT1	3.282338e-02
1226	B3GALNT2	1
1227	B3GALT1	5.741156e-01
1228	B3GALT2	5.859986e-01
1229	B3GALT4	8.114607e-01
1230	B3GALT5	3.691273e-01
1231	B3GALT6	1
1232	B3GALTL	7.084211e-01
1233	B3GAT1	8.762114e-01
1234	B3GAT2	1
1235	B3GAT3	9.155144e-01
In gene B3GNT1 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 1138    n = 1	mu =   8.55e-07
1236	B3GNT1	5.252383e-01
1237	B3GNT2	3.039208e-01
1238	B3GNT3	6.037948e-01
1239	B3GNT4	7.569254e-01
1240	B3GNT5	7.863456e-01
1241	B3GNT6	1
1242	B3GNT7	1.736311e-01
1243	B3GNT8	8.676366e-01
1244	B3GNT9	4.765342e-01
1245	B3GNTL1	7.816289e-01
1246	B4GALNT1	4.297883e-01
1247	B4GALNT2	8.945325e-01
1248	B4GALNT3	1
1249	B4GALNT4	9.581120e-01
1250	B4GALT1	8.205118e-02
1251	B4GALT2	7.701727e-01
1252	B4GALT3	2.455883e-02
1253	B4GALT4	1
1254	B4GALT5	5.219039e-01
1255	B4GALT6	6.568373e-02
1256	B4GALT7	1
1257	B9D1	1.667992e-01
1258	B9D2	6.060238e-01
1259	BAALC	2.008414e-02
1260	BAAT	3.424450e-01
1261	BACE1	9.118367e-01
1262	BACE2	3.313006e-01
Done

Running MutSig 2:
Scatter job 14: processing genes 1173 - 1262
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ATR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.506925e-02	ci left: 4.208664e-01	ci right 4.403740e-01	k: 4306	n:10000
Cons ci ratio: 1.600187e-02	ci left: 8.501887e-01	ci right 8.640026e-01	k: 8572	n:10000
KS ci ratio: 7.452654e-02	ci left: 2.085598e-01	ci right 2.248056e-01	k: 2166	n:10000
ATR   10000 perm   5 sec   (2221 perm/sec)   p_kst 2.166000e-01   p_cons 8.572000e-01   p_joint 4.306000e-01

Outputting figure to mutsig2_images.part000000000014/ATR.17_8123_10000_0.2166_0.8572_0.4306.png
                gene_name: ATR
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 2 percent done.
ATP8A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.792695e-02	ci left: 3.049087e-01	ci right 3.231997e-01	k: 3140	n:10000
Cons ci ratio: 6.604575e-02	ci left: 2.518194e-01	ci right 2.691203e-01	k: 2604	n:10000
KS ci ratio: 5.260898e-02	ci left: 3.475029e-01	ci right 3.663805e-01	k: 3569	n:10000
ATP8A2   10000 perm   2 sec   (4133 perm/sec)   p_kst 3.569000e-01   p_cons 2.604000e-01   p_joint 3.140000e-01

Outputting figure to mutsig2_images.part000000000014/ATP8A2.14_3715_10000_0.3569_0.2604_0.314.png
                gene_name: ATP8A2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 4 percent done.
ATRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.100344e-02	ci left: 1.493316e-01	ci right 1.636692e-01	k: 1564	n:10000
Cons ci ratio: 8.717051e-02	ci left: 1.608181e-01	ci right 1.755758e-01	k: 1681	n:10000
KS ci ratio: 6.973651e-02	ci left: 2.316560e-01	ci right 2.484957e-01	k: 2400	n:10000
ATRN   10000 perm   2 sec   (4271 perm/sec)   p_kst 2.400000e-01   p_cons 1.681000e-01   p_joint 1.564000e-01

Outputting figure to mutsig2_images.part000000000014/ATRN.13_4428_10000_0.24_0.1681_0.1564.png
                gene_name: ATRN
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 6 percent done.
ATP8B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.516236e-02	ci left: 8.631486e-01	ci right 8.764352e-01	k: 8699	n:10000
KS ci ratio: 2.078242e-02	ci left: 7.723578e-01	ci right 7.886785e-01	k: 7806	n:10000
ATP8B4   10000 perm   2 sec   (4674 perm/sec)   p_kst 7.806000e-01   p_cons 8.699000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/ATP8B4.12_3687_10000_0.7806_0.8699_1.png
                gene_name: ATP8B4
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
ATP8A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.773228e-02	ci left: 5.091529e-01	ci right 5.288360e-01	k: 5190	n:10000
Cons ci ratio: 4.119669e-02	ci left: 4.652708e-01	ci right 4.849437e-01	k: 4751	n:10000
KS ci ratio: 4.411732e-02	ci left: 4.313368e-01	ci right 4.508976e-01	k: 4411	n:10000
ATP8A1   10000 perm   2 sec   (4473 perm/sec)   p_kst 4.411000e-01   p_cons 4.751000e-01   p_joint 5.190000e-01

Outputting figure to mutsig2_images.part000000000014/ATP8A1.10_3721_10000_0.4411_0.4751_0.519.png
                gene_name: ATP8A1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 9 percent done.
ATRNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.184528e-01	ci left: 9.282438e-02	ci right 1.046106e-01	k: 986	n:10000
Cons ci ratio: 3.197654e-02	ci left: 5.907217e-01	ci right 6.100198e-01	k: 6004	n:10000
KS ci ratio: 1.818499e-01	ci left: 4.035041e-02	ci right 4.851765e-02	k: 443	n:10000
ATRNL1   10000 perm   3 sec   (2943 perm/sec)   p_kst 4.430000e-02   p_cons 6.004000e-01   p_joint 9.860000e-02

Joint ci ratio: 8.827251e-02	ci left: 8.577461e-02	ci right 9.374513e-02	k: 1794	n:20000
Cons ci ratio: 2.279864e-02	ci left: 5.896120e-01	ci right 6.032599e-01	k: 11929	n:20000
KS ci ratio: 1.271729e-01	ci left: 4.245914e-02	ci right 4.827396e-02	k: 906	n:20000
ATRNL1   20000 perm   7 sec   (3009 perm/sec)   p_kst 4.530000e-02   p_cons 5.964500e-01   p_joint 8.970000e-02

Joint ci ratio: 6.950278e-02	ci left: 9.252495e-02	ci right 9.922021e-02	k: 2875	n:30000
Cons ci ratio: 1.859795e-02	ci left: 5.913235e-01	ci right 6.024577e-01	k: 17907	n:30000
KS ci ratio: 1.042996e-01	ci left: 4.261666e-02	ci right 4.733863e-02	k: 1348	n:30000
ATRNL1   30000 perm   10 sec   (2988 perm/sec)   p_kst 4.493333e-02   p_cons 5.969000e-01   p_joint 9.583333e-02

Joint ci ratio: 6.178736e-02	ci left: 8.859315e-02	ci right 9.426633e-02	k: 3656	n:40000
Cons ci ratio: 1.615586e-02	ci left: 5.905959e-01	ci right 6.002403e-01	k: 23817	n:40000
KS ci ratio: 9.050223e-02	ci left: 4.276891e-02	ci right 4.684750e-02	k: 1791	n:40000
ATRNL1   40000 perm   13 sec   (3005 perm/sec)   p_kst 4.477500e-02   p_cons 5.954250e-01   p_joint 9.140000e-02

Outputting figure to mutsig2_images.part000000000014/ATRNL1.10_4256_40000_0.044775_0.59542_0.0914.png
                gene_name: ATRNL1
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.094 

Current progress: 11 percent done.
ATP8B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.692793e-02	ci left: 4.012342e-01	ci right 4.206178e-01	k: 4109	n:10000
Cons ci ratio: 2.518543e-02	ci left: 6.987770e-01	ci right 7.167018e-01	k: 7078	n:10000
KS ci ratio: 5.936928e-02	ci left: 2.944970e-01	ci right 3.126176e-01	k: 3035	n:10000
ATP8B1   10000 perm   2 sec   (4188 perm/sec)   p_kst 3.035000e-01   p_cons 7.078000e-01   p_joint 4.109000e-01

Outputting figure to mutsig2_images.part000000000014/ATP8B1.9_3864_10000_0.3035_0.7078_0.4109.png
                gene_name: ATP8B1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 13 percent done.
AXIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.292136e-02	ci left: 7.365388e-01	ci right 7.537181e-01	k: 7452	n:10000
KS ci ratio: 1.832371e-02	ci left: 8.130385e-01	ci right 8.281743e-01	k: 8207	n:10000
AXIN2   10000 perm   2 sec   (4389 perm/sec)   p_kst 8.207000e-01   p_cons 7.452000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/AXIN2.9_2572_10000_0.8207_0.7452_1.png
                gene_name: AXIN2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
ATP8B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.479387e-01	ci left: 6.072801e-02	ci right 7.052689e-02	k: 655	n:10000
Cons ci ratio: 2.716135e-02	ci left: 6.663243e-01	ci right 6.847734e-01	k: 6756	n:10000
KS ci ratio: 2.723101e-01	ci left: 1.753307e-02	ci right 2.315124e-02	k: 202	n:10000
ATP8B2   10000 perm   3 sec   (3604 perm/sec)   p_kst 2.020000e-02   p_cons 6.756000e-01   p_joint 6.550000e-02

Joint ci ratio: 1.063564e-01	ci left: 6.020772e-02	ci right 6.701982e-02	k: 1271	n:20000
Cons ci ratio: 1.886361e-02	ci left: 6.769524e-01	ci right 6.898942e-01	k: 13669	n:20000
KS ci ratio: 1.935323e-01	ci left: 1.815237e-02	ci right 2.208889e-02	k: 401	n:20000
ATP8B2   20000 perm   6 sec   (3612 perm/sec)   p_kst 2.005000e-02   p_cons 6.834500e-01   p_joint 6.355000e-02

Joint ci ratio: 1.005700e-01	ci left: 4.577092e-02	ci right 5.065039e-02	k: 1445	n:30000
Cons ci ratio: 1.512584e-02	ci left: 6.859706e-01	ci right 6.964590e-01	k: 20737	n:30000
KS ci ratio: 1.573553e-01	ci left: 1.867001e-02	ci right 2.189050e-02	k: 607	n:30000
ATP8B2   30000 perm   8 sec   (3635 perm/sec)   p_kst 2.023333e-02   p_cons 6.912333e-01   p_joint 4.816667e-02

Joint ci ratio: 8.905511e-02	ci left: 4.413888e-02	ci right 4.827732e-02	k: 1847	n:40000
Cons ci ratio: 1.310812e-02	ci left: 6.863952e-01	ci right 6.954770e-01	k: 27638	n:40000
KS ci ratio: 1.357340e-01	ci left: 1.903706e-02	ci right 2.183317e-02	k: 816	n:40000
ATP8B2   40000 perm   11 sec   (3629 perm/sec)   p_kst 2.040000e-02   p_cons 6.909500e-01   p_joint 4.617500e-02

Joint ci ratio: 9.733335e-02	ci left: 2.988863e-02	ci right 3.296609e-02	k: 1570	n:50000
Cons ci ratio: 1.169164e-02	ci left: 6.880728e-01	ci right 6.961849e-01	k: 34607	n:50000
KS ci ratio: 1.254959e-01	ci left: 1.793761e-02	ci right 2.035867e-02	k: 956	n:50000
ATP8B2   50000 perm   14 sec   (3629 perm/sec)   p_kst 1.912000e-02   p_cons 6.921400e-01   p_joint 3.140000e-02

Joint ci ratio: 7.356615e-02	ci left: 4.351869e-02	ci right 4.685881e-02	k: 2710	n:60000
Cons ci ratio: 1.069152e-02	ci left: 6.876864e-01	ci right 6.950950e-01	k: 41484	n:60000
KS ci ratio: 1.136768e-01	ci left: 1.832754e-02	ci right 2.055262e-02	k: 1165	n:60000
ATP8B2   60000 perm   17 sec   (3601 perm/sec)   p_kst 1.941667e-02   p_cons 6.914000e-01   p_joint 4.516667e-02

Joint ci ratio: 6.858549e-02	ci left: 4.305448e-02	ci right 4.612628e-02	k: 3120	n:70000
Cons ci ratio: 9.910698e-03	ci left: 6.874330e-01	ci right 6.942941e-01	k: 48361	n:70000
KS ci ratio: 1.032621e-01	ci left: 1.912883e-02	ci right 2.122550e-02	k: 1411	n:70000
ATP8B2   70000 perm   20 sec   (3577 perm/sec)   p_kst 2.015714e-02   p_cons 6.908714e-01   p_joint 4.457143e-02

Joint ci ratio: 6.562188e-02	ci left: 4.129704e-02	ci right 4.411124e-02	k: 3415	n:80000
Cons ci ratio: 9.249658e-03	ci left: 6.886247e-01	ci right 6.950363e-01	k: 55347	n:80000
KS ci ratio: 9.655365e-02	ci left: 1.921190e-02	ci right 2.117311e-02	k: 1614	n:80000
ATP8B2   80000 perm   23 sec   (3534 perm/sec)   p_kst 2.017500e-02   p_cons 6.918375e-01   p_joint 4.268750e-02

Outputting figure to mutsig2_images.part000000000014/ATP8B2.8_3914_80000_0.020175_0.69184_0.042688.png
                gene_name: ATP8B2
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.044 

Current progress: 17 percent done.
ATP9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.930025e-02	ci left: 7.969948e-01	ci right 8.126273e-01	k: 8049	n:10000
Cons ci ratio: 3.323762e-02	ci left: 5.719593e-01	ci right 5.913931e-01	k: 5817	n:10000
KS ci ratio: 3.563971e-02	ci left: 5.375817e-01	ci right 5.571907e-01	k: 5474	n:10000
ATP9A   10000 perm   3 sec   (3451 perm/sec)   p_kst 5.474000e-01   p_cons 5.817000e-01   p_joint 8.049000e-01

Outputting figure to mutsig2_images.part000000000014/ATP9A.8_3256_10000_0.5474_0.5817_0.8049.png
                gene_name: ATP9A
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 19 percent done.
ATRX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.147915e-02	ci left: 5.982508e-01	ci right 6.174863e-01	k: 6079	n:10000
Cons ci ratio: 3.266055e-02	ci left: 5.804858e-01	ci right 5.998616e-01	k: 5902	n:10000
KS ci ratio: 4.790096e-02	ci left: 3.913742e-01	ci right 4.106835e-01	k: 4010	n:10000
ATRX   10000 perm   3 sec   (3331 perm/sec)   p_kst 4.010000e-01   p_cons 5.902000e-01   p_joint 6.079000e-01

Outputting figure to mutsig2_images.part000000000014/ATRX.8_7619_10000_0.401_0.5902_0.6079.png
                gene_name: ATRX
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 20 percent done.
ATXN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.673487e-02	ci left: 6.732741e-01	ci right 6.916195e-01	k: 6825	n:10000
Cons ci ratio: 6.602499e-03	ci left: 9.691039e-01	ci right 9.756170e-01	k: 9725	n:10000
KS ci ratio: 4.309433e-02	ci left: 4.429091e-01	ci right 4.625185e-01	k: 4527	n:10000
ATXN1   10000 perm   2 sec   (4703 perm/sec)   p_kst 4.527000e-01   p_cons 9.725000e-01   p_joint 6.825000e-01

Outputting figure to mutsig2_images.part000000000014/ATXN1.8_2456_10000_0.4527_0.9725_0.6825.png
                gene_name: ATXN1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 22 percent done.
ATP9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.065542e-01	ci left: 1.128131e-01	ci right 1.256096e-01	k: 1191	n:10000
Cons ci ratio: 1.910384e-01	ci left: 3.652992e-02	ci right 4.434069e-02	k: 403	n:10000
KS ci ratio: 4.936750e-02	ci left: 3.770397e-01	ci right 3.962264e-01	k: 3866	n:10000
ATP9B   10000 perm   2 sec   (4857 perm/sec)   p_kst 3.866000e-01   p_cons 4.030000e-02   p_joint 1.191000e-01

Joint ci ratio: 7.570759e-02	ci left: 1.137072e-01	ci right 1.227041e-01	k: 2363	n:20000
Cons ci ratio: 1.352622e-01	ci left: 3.756809e-02	ci right 4.306657e-02	k: 805	n:20000
KS ci ratio: 3.514823e-02	ci left: 3.766539e-01	ci right 3.901800e-01	k: 7668	n:20000
ATP9B   20000 perm   5 sec   (4418 perm/sec)   p_kst 3.834000e-01   p_cons 4.025000e-02   p_joint 1.181500e-01

Joint ci ratio: 6.161847e-02	ci left: 1.151920e-01	ci right 1.225487e-01	k: 3565	n:30000
Cons ci ratio: 1.062525e-01	ci left: 4.108949e-02	ci right 4.573279e-02	k: 1301	n:30000
KS ci ratio: 2.886801e-02	ci left: 3.751341e-01	ci right 3.861557e-01	k: 11419	n:30000
ATP9B   30000 perm   7 sec   (4204 perm/sec)   p_kst 3.806333e-01   p_cons 4.336667e-02   p_joint 1.188333e-01

Joint ci ratio: 5.931985e-02	ci left: 9.549780e-02	ci right 1.013606e-01	k: 3936	n:40000
Cons ci ratio: 9.201772e-02	ci left: 4.139949e-02	ci right 4.541714e-02	k: 1735	n:40000
KS ci ratio: 2.529951e-02	ci left: 3.703023e-01	ci right 3.798159e-01	k: 15002	n:40000
ATP9B   40000 perm   10 sec   (4015 perm/sec)   p_kst 3.750500e-01   p_cons 4.337500e-02   p_joint 9.840000e-02

Outputting figure to mutsig2_images.part000000000014/ATP9B.7_3564_40000_0.37505_0.043375_0.0984.png
                gene_name: ATP9B
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 24 percent done.
ATXN2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.600187e-02	ci left: 8.501887e-01	ci right 8.640026e-01	k: 8572	n:10000
Cons ci ratio: 4.835253e-02	ci left: 3.868937e-01	ci right 4.061666e-01	k: 3965	n:10000
KS ci ratio: 2.159350e-02	ci left: 7.587897e-01	ci right 7.754544e-01	k: 7672	n:10000
ATXN2L   10000 perm   2 sec   (4712 perm/sec)   p_kst 7.672000e-01   p_cons 3.965000e-01   p_joint 8.572000e-01

Outputting figure to mutsig2_images.part000000000014/ATXN2L.7_3552_10000_0.7672_0.3965_0.8572.png
                gene_name: ATXN2L
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 26 percent done.
AURKC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.884302e-02	ci left: 4.946505e-01	ci right 5.143469e-01	k: 5045	n:10000
Cons ci ratio: 3.841808e-02	ci left: 5.001504e-01	ci right 5.198437e-01	k: 5100	n:10000
KS ci ratio: 6.049727e-02	ci left: 2.866670e-01	ci right 3.046522e-01	k: 2956	n:10000
AURKC   10000 perm   2 sec   (5498 perm/sec)   p_kst 2.956000e-01   p_cons 5.100000e-01   p_joint 5.045000e-01

Outputting figure to mutsig2_images.part000000000014/AURKC.7_963_10000_0.2956_0.51_0.5045.png
                gene_name: AURKC
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 28 percent done.
B4GALT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.500802e-02	ci left: 8.654978e-01	ci right 8.786846e-01	k: 8722	n:10000
Cons ci ratio: 4.426074e-02	ci left: 4.297410e-01	ci right 4.492943e-01	k: 4395	n:10000
KS ci ratio: 6.808752e-03	ci left: 9.673099e-01	ci right 9.740122e-01	k: 9708	n:10000
B4GALT3   10000 perm   2 sec   (5217 perm/sec)   p_kst 9.708000e-01   p_cons 4.395000e-01   p_joint 8.722000e-01

Outputting figure to mutsig2_images.part000000000014/B4GALT3.7_1206_10000_0.9708_0.4395_0.8722.png
                gene_name: B4GALT3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 30 percent done.
AUTS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.308208e-02	ci left: 3.434285e-01	ci right 3.622573e-01	k: 3528	n:10000
Cons ci ratio: 8.159911e-02	ci left: 1.797935e-01	ci right 1.951890e-01	k: 1874	n:10000
KS ci ratio: 2.760851e-02	ci left: 6.590747e-01	ci right 6.776271e-01	k: 6684	n:10000
AUTS2   10000 perm   3 sec   (3484 perm/sec)   p_kst 6.684000e-01   p_cons 1.874000e-01   p_joint 3.528000e-01

Outputting figure to mutsig2_images.part000000000014/AUTS2.6_4001_10000_0.6684_0.1874_0.3528.png
                gene_name: AUTS2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 31 percent done.
AVPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.365594e-02	ci left: 5.658420e-01	ci right 5.853140e-01	k: 5756	n:10000
KS ci ratio: 1.851635e-02	ci left: 8.098890e-01	ci right 8.251256e-01	k: 8176	n:10000
AVPR2   10000 perm   2 sec   (5420 perm/sec)   p_kst 8.176000e-01   p_cons 5.756000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/AVPR2.6_1148_10000_0.8176_0.5756_1.png
                gene_name: AVPR2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
AXL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.384917e-02	ci left: 5.630346e-01	ci right 5.825230e-01	k: 5728	n:10000
Cons ci ratio: 6.148482e-02	ci left: 2.800289e-01	ci right 2.978941e-01	k: 2889	n:10000
KS ci ratio: 2.989034e-02	ci left: 6.227620e-01	ci right 6.417609e-01	k: 6323	n:10000
AXL   10000 perm   2 sec   (4365 perm/sec)   p_kst 6.323000e-01   p_cons 2.889000e-01   p_joint 5.728000e-01

Outputting figure to mutsig2_images.part000000000014/AXL.6_2765_10000_0.6323_0.2889_0.5728.png
                gene_name: AXL
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 35 percent done.
B2M
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.706549e-02	ci left: 8.333784e-01	ci right 8.478226e-01	k: 8407	n:10000
Cons ci ratio: 4.396556e-02	ci left: 4.330324e-01	ci right 4.526010e-01	k: 4428	n:10000
KS ci ratio: 2.277052e-02	ci left: 7.390659e-01	ci right 7.561897e-01	k: 7477	n:10000
B2M   10000 perm   2 sec   (4942 perm/sec)   p_kst 7.477000e-01   p_cons 4.428000e-01   p_joint 8.407000e-01

Outputting figure to mutsig2_images.part000000000014/B2M.6_372_10000_0.7477_0.4428_0.8407.png
                gene_name: B2M
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 37 percent done.
B3GNT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.275845e-02	ci left: 7.392680e-01	ci right 7.563874e-01	k: 7479	n:10000
Cons ci ratio: 5.877849e-03	ci left: 9.750383e-01	ci right 9.808786e-01	k: 9781	n:10000
KS ci ratio: 2.884472e-02	ci left: 6.392513e-01	ci right 6.580620e-01	k: 6487	n:10000
B3GNT7   10000 perm   2 sec   (5153 perm/sec)   p_kst 6.487000e-01   p_cons 9.781000e-01   p_joint 7.479000e-01

Outputting figure to mutsig2_images.part000000000014/B3GNT7.6_1214_10000_0.6487_0.9781_0.7479.png
                gene_name: B3GNT7
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 39 percent done.
B4GALT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.141993e-01	ci left: 9.934967e-02	ci right 1.114813e-01	k: 1053	n:10000
Cons ci ratio: 5.426490e-02	ci left: 3.334940e-01	ci right 3.521976e-01	k: 3428	n:10000
KS ci ratio: 1.069109e-01	ci left: 1.121295e-01	ci right 1.248936e-01	k: 1184	n:10000
B4GALT1   10000 perm   2 sec   (5461 perm/sec)   p_kst 1.184000e-01   p_cons 3.428000e-01   p_joint 1.053000e-01

Joint ci ratio: 7.023766e-02	ci left: 1.299968e-01	ci right 1.395096e-01	k: 2694	n:20000
Cons ci ratio: 3.757162e-02	ci left: 3.457761e-01	ci right 3.590668e-01	k: 7048	n:20000
KS ci ratio: 7.518557e-02	ci left: 1.151334e-01	ci right 1.241775e-01	k: 2392	n:20000
B4GALT1   20000 perm   5 sec   (4252 perm/sec)   p_kst 1.196000e-01   p_cons 3.524000e-01   p_joint 1.347000e-01

Outputting figure to mutsig2_images.part000000000014/B4GALT1.6_1221_20000_0.1196_0.3524_0.1347.png
                gene_name: B4GALT1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 41 percent done.
ATXN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.494961e-02	ci left: 2.582492e-01	ci right 2.756868e-01	k: 2669	n:10000
Cons ci ratio: 8.438058e-02	ci left: 1.699576e-01	ci right 1.850308e-01	k: 1774	n:10000
KS ci ratio: 5.931317e-02	ci left: 2.948935e-01	ci right 3.130208e-01	k: 3039	n:10000
ATXN2   10000 perm   2 sec   (4275 perm/sec)   p_kst 3.039000e-01   p_cons 1.774000e-01   p_joint 2.669000e-01

Outputting figure to mutsig2_images.part000000000014/ATXN2.5_4042_10000_0.3039_0.1774_0.2669.png
                gene_name: ATXN2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 43 percent done.
ATXN3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.223032e-02	ci left: 5.869078e-01	ci right 6.062359e-01	k: 5966	n:10000
Cons ci ratio: 7.854533e-02	ci left: 1.915089e-01	ci right 2.072666e-01	k: 1993	n:10000
KS ci ratio: 3.374555e-02	ci left: 5.645385e-01	ci right 5.840182e-01	k: 5743	n:10000
ATXN3L   10000 perm   2 sec   (5361 perm/sec)   p_kst 5.743000e-01   p_cons 1.993000e-01   p_joint 5.966000e-01

Outputting figure to mutsig2_images.part000000000014/ATXN3L.5_1072_10000_0.5743_0.1993_0.5966.png
                gene_name: ATXN3L
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 44 percent done.
B4GALT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.180551e-01	ci left: 9.340841e-02	ci right 1.052262e-01	k: 992	n:10000
Cons ci ratio: 4.276542e-02	ci left: 4.467012e-01	ci right 4.663241e-01	k: 4565	n:10000
KS ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
B4GALT6   10000 perm   2 sec   (5730 perm/sec)   p_kst 5.170000e-02   p_cons 4.565000e-01   p_joint 9.920000e-02

Joint ci ratio: 7.194405e-02	ci left: 1.245805e-01	ci right 1.339276e-01	k: 2584	n:20000
Cons ci ratio: 3.013279e-02	ci left: 4.513761e-01	ci right 4.652360e-01	k: 9166	n:20000
KS ci ratio: 1.208198e-01	ci left: 4.697153e-02	ci right 5.306014e-02	k: 999	n:20000
B4GALT6   20000 perm   4 sec   (4836 perm/sec)   p_kst 4.995000e-02   p_cons 4.583000e-01   p_joint 1.292000e-01

Joint ci ratio: 8.094822e-02	ci left: 6.955776e-02	ci right 7.545868e-02	k: 2174	n:30000
Cons ci ratio: 2.469172e-02	ci left: 4.508846e-01	ci right 4.621905e-01	k: 13696	n:30000
KS ci ratio: 1.010851e-01	ci left: 4.531547e-02	ci right 5.017259e-02	k: 1431	n:30000
B4GALT6   30000 perm   7 sec   (4428 perm/sec)   p_kst 4.770000e-02   p_cons 4.565333e-01   p_joint 7.246667e-02

Joint ci ratio: 7.243279e-02	ci left: 6.574849e-02	ci right 7.071442e-02	k: 2728	n:40000
Cons ci ratio: 2.071994e-02	ci left: 4.673223e-01	ci right 4.771317e-01	k: 18889	n:40000
KS ci ratio: 8.870341e-02	ci left: 4.448145e-02	ci right 4.863470e-02	k: 1861	n:40000
B4GALT6   40000 perm   10 sec   (4111 perm/sec)   p_kst 4.652500e-02   p_cons 4.722250e-01   p_joint 6.820000e-02

Outputting figure to mutsig2_images.part000000000014/B4GALT6.5_1185_40000_0.046525_0.47223_0.0682.png
                gene_name: B4GALT6
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.071 

Current progress: 46 percent done.
AVIL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.079888e-01	ci left: 3.072413e-02	ci right 3.795045e-02	k: 342	n:10000
Cons ci ratio: 3.239796e-02	ci left: 5.843990e-01	ci right 6.037461e-01	k: 5941	n:10000
KS ci ratio: 3.527114e-01	ci left: 1.005013e-02	ci right 1.444087e-02	k: 121	n:10000
AVIL   10000 perm   2 sec   (4136 perm/sec)   p_kst 1.210000e-02   p_cons 5.941000e-01   p_joint 3.420000e-02

Joint ci ratio: 1.229707e-01	ci left: 4.536948e-02	ci right 5.136270e-02	k: 966	n:20000
Cons ci ratio: 2.314835e-02	ci left: 5.822438e-01	ci right 5.959302e-01	k: 11782	n:20000
KS ci ratio: 2.604388e-01	ci left: 9.741161e-03	ci right 1.270351e-02	k: 223	n:20000
AVIL   20000 perm   5 sec   (4222 perm/sec)   p_kst 1.115000e-02   p_cons 5.891000e-01   p_joint 4.830000e-02

Joint ci ratio: 1.276696e-01	ci left: 2.851845e-02	ci right 3.243985e-02	k: 913	n:30000
Cons ci ratio: 1.891262e-02	ci left: 5.832070e-01	ci right 5.943758e-01	k: 17664	n:30000
KS ci ratio: 2.189992e-01	ci left: 9.409021e-03	ci right 1.175388e-02	k: 316	n:30000
AVIL   30000 perm   7 sec   (4007 perm/sec)   p_kst 1.053333e-02   p_cons 5.888000e-01   p_joint 3.043333e-02

Joint ci ratio: 1.058495e-01	ci left: 3.139265e-02	ci right 3.492554e-02	k: 1325	n:40000
Cons ci ratio: 1.643229e-02	ci left: 5.823815e-01	ci right 5.920558e-01	k: 23489	n:40000
KS ci ratio: 1.904966e-01	ci left: 9.476622e-03	ci right 1.149539e-02	k: 418	n:40000
AVIL   40000 perm   10 sec   (3867 perm/sec)   p_kst 1.045000e-02   p_cons 5.872250e-01   p_joint 3.312500e-02

Joint ci ratio: 1.026116e-01	ci left: 2.690291e-02	ci right 2.983219e-02	k: 1417	n:50000
Cons ci ratio: 1.469045e-02	ci left: 5.831300e-01	ci right 5.917799e-01	k: 29373	n:50000
KS ci ratio: 1.680899e-01	ci left: 9.855008e-03	ci right 1.168246e-02	k: 537	n:50000
AVIL   50000 perm   14 sec   (3676 perm/sec)   p_kst 1.074000e-02   p_cons 5.874600e-01   p_joint 2.834000e-02

Joint ci ratio: 8.878487e-02	ci left: 3.006786e-02	ci right 3.287770e-02	k: 1887	n:60000
Cons ci ratio: 1.338777e-02	ci left: 5.843329e-01	ci right 5.922252e-01	k: 35297	n:60000
KS ci ratio: 1.519760e-01	ci left: 1.013269e-02	ci right 1.181512e-02	k: 657	n:60000
AVIL   60000 perm   16 sec   (3649 perm/sec)   p_kst 1.095000e-02   p_cons 5.882833e-01   p_joint 3.145000e-02

Joint ci ratio: 6.189197e-02	ci left: 5.252003e-02	ci right 5.588847e-02	k: 3793	n:70000
Cons ci ratio: 1.268451e-02	ci left: 5.733728e-01	ci right 5.807065e-01	k: 40393	n:70000
KS ci ratio: 1.422724e-01	ci left: 9.964798e-03	ci right 1.150473e-02	k: 750	n:70000
AVIL   70000 perm   20 sec   (3570 perm/sec)   p_kst 1.071429e-02   p_cons 5.770429e-01   p_joint 5.418571e-02

Joint ci ratio: 7.020178e-02	ci left: 3.619405e-02	ci right 3.883963e-02	k: 3000	n:80000
Cons ci ratio: 1.187151e-02	ci left: 5.733549e-01	ci right 5.802146e-01	k: 46143	n:80000
KS ci ratio: 1.332633e-01	ci left: 9.986500e-03	ci right 1.142432e-02	k: 855	n:80000
AVIL   80000 perm   23 sec   (3476 perm/sec)   p_kst 1.068750e-02   p_cons 5.767875e-01   p_joint 3.750000e-02

Joint ci ratio: 6.887174e-02	ci left: 3.354654e-02	ci right 3.595024e-02	k: 3126	n:90000
Cons ci ratio: 1.120606e-02	ci left: 5.729636e-01	ci right 5.794315e-01	k: 51858	n:90000
KS ci ratio: 1.257079e-01	ci left: 1.001654e-02	ci right 1.137083e-02	k: 961	n:90000
AVIL   90000 perm   26 sec   (3458 perm/sec)   p_kst 1.067778e-02   p_cons 5.762000e-01   p_joint 3.473333e-02

Joint ci ratio: 7.181829e-02	ci left: 2.789002e-02	ci right 2.997742e-02	k: 2892	n:100000
Cons ci ratio: 1.038141e-02	ci left: 5.847016e-01	ci right 5.908133e-01	k: 58776	n:100000
KS ci ratio: 1.189139e-01	ci left: 1.011036e-02	ci right 1.139825e-02	k: 1074	n:100000
AVIL   100000 perm   29 sec   (3448 perm/sec)   p_kst 1.074000e-02   p_cons 5.877600e-01   p_joint 2.892000e-02

Joint ci ratio: 6.221168e-02	ci left: 3.375154e-02	ci right 3.592762e-02	k: 3831	n:110000
Cons ci ratio: 9.893577e-03	ci left: 5.850754e-01	ci right 5.909017e-01	k: 64679	n:110000
KS ci ratio: 1.127790e-01	ci left: 1.025059e-02	ci right 1.148449e-02	k: 1194	n:110000
AVIL   110000 perm   32 sec   (3436 perm/sec)   p_kst 1.085455e-02   p_cons 5.879909e-01   p_joint 3.482727e-02

Joint ci ratio: 4.830435e-02	ci left: 5.076693e-02	ci right 5.328810e-02	k: 6242	n:120000
Cons ci ratio: 9.474164e-03	ci left: 5.851088e-01	ci right 5.906869e-01	k: 70548	n:120000
KS ci ratio: 1.064862e-01	ci left: 1.057168e-02	ci right 1.176878e-02	k: 1339	n:120000
AVIL   120000 perm   36 sec   (3322 perm/sec)   p_kst 1.115833e-02   p_cons 5.879000e-01   p_joint 5.201667e-02

Joint ci ratio: 4.675029e-02	ci left: 5.010695e-02	ci right 5.251311e-02	k: 6669	n:130000
Cons ci ratio: 9.099455e-03	ci left: 5.853803e-01	ci right 5.907389e-01	k: 76448	n:130000
KS ci ratio: 1.022256e-01	ci left: 1.061253e-02	ci right 1.176328e-02	k: 1453	n:130000
AVIL   130000 perm   42 sec   (3112 perm/sec)   p_kst 1.117692e-02   p_cons 5.880615e-01   p_joint 5.130000e-02

Joint ci ratio: 4.608730e-02	ci left: 4.800218e-02	ci right 5.027369e-02	k: 6878	n:140000
Cons ci ratio: 8.770608e-03	ci left: 5.853592e-01	ci right 5.905229e-01	k: 82312	n:140000
KS ci ratio: 9.831193e-02	ci left: 1.067623e-02	ci right 1.178701e-02	k: 1571	n:140000
AVIL   140000 perm   45 sec   (3080 perm/sec)   p_kst 1.122143e-02   p_cons 5.879429e-01   p_joint 4.912857e-02

Outputting figure to mutsig2_images.part000000000014/AVIL.4_2536_140000_0.011221_0.58794_0.049129.png
                gene_name: AVIL
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.050 

Current progress: 48 percent done.
AVPR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.879990e-02	ci left: 3.825137e-01	ci right 4.017492e-01	k: 3921	n:10000
Cons ci ratio: 1.298648e-01	ci left: 7.805288e-02	ci right 8.899118e-02	k: 834	n:10000
KS ci ratio: 1.297599e-02	ci left: 8.952868e-01	ci right 9.070783e-01	k: 9013	n:10000
AVPR1A   10000 perm   3 sec   (3561 perm/sec)   p_kst 9.013000e-01   p_cons 8.340000e-02   p_joint 3.921000e-01

Joint ci ratio: 4.009282e-02	ci left: 3.168684e-01	ci right 3.298830e-01	k: 6467	n:20000
Cons ci ratio: 9.123533e-02	ci left: 8.063194e-02	ci right 8.838936e-02	k: 1689	n:20000
KS ci ratio: 9.145660e-03	ci left: 8.976431e-01	ci right 9.059397e-01	k: 18037	n:20000
AVPR1A   20000 perm   5 sec   (3809 perm/sec)   p_kst 9.018500e-01   p_cons 8.445000e-02   p_joint 3.233500e-01

Outputting figure to mutsig2_images.part000000000014/AVPR1A.4_1265_20000_0.90185_0.08445_0.32335.png
                gene_name: AVPR1A
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 50 percent done.
AWAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.492635e-02	ci left: 5.475994e-01	ci right 5.671671e-01	k: 5574	n:10000
Cons ci ratio: 6.707253e-02	ci left: 2.459853e-01	ci right 2.631579e-01	k: 2545	n:10000
KS ci ratio: 2.619358e-02	ci left: 6.821411e-01	ci right 7.003474e-01	k: 6913	n:10000
AWAT1   10000 perm   2 sec   (5232 perm/sec)   p_kst 6.913000e-01   p_cons 2.545000e-01   p_joint 5.574000e-01

Outputting figure to mutsig2_images.part000000000014/AWAT1.4_1015_10000_0.6913_0.2545_0.5574.png
                gene_name: AWAT1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 52 percent done.
B3GALNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.223299e-02	ci left: 3.507829e-01	ci right 3.696986e-01	k: 3602	n:10000
Cons ci ratio: 3.514628e-02	ci left: 5.444935e-01	ci right 5.640749e-01	k: 5543	n:10000
KS ci ratio: 8.863152e-02	ci left: 1.563004e-01	ci right 1.708961e-01	k: 1635	n:10000
B3GALNT1   10000 perm   2 sec   (5079 perm/sec)   p_kst 1.635000e-01   p_cons 5.543000e-01   p_joint 3.602000e-01

Outputting figure to mutsig2_images.part000000000014/B3GALNT1.4_1000_10000_0.1635_0.5543_0.3602.png
                gene_name: B3GALNT1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 54 percent done.
B3GALT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.969253e-02	ci left: 7.905018e-01	ci right 8.063240e-01	k: 7985	n:10000
Cons ci ratio: 4.949518e-03	ci left: 9.817751e-01	ci right 9.867370e-01	k: 9844	n:10000
KS ci ratio: 2.612611e-02	ci left: 6.832497e-01	ci right 7.014381e-01	k: 6924	n:10000
B3GALT5   10000 perm   2 sec   (4607 perm/sec)   p_kst 6.924000e-01   p_cons 9.844000e-01   p_joint 7.985000e-01

Outputting figure to mutsig2_images.part000000000014/B3GALT5.4_937_10000_0.6924_0.9844_0.7985.png
                gene_name: B3GALT5
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 56 percent done.
B4GALNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.158686e-02	ci left: 4.605772e-01	ci right 4.802401e-01	k: 4704	n:10000
Cons ci ratio: 5.513094e-02	ci left: 3.264433e-01	ci right 3.450525e-01	k: 3357	n:10000
KS ci ratio: 4.718083e-02	ci left: 3.986443e-01	ci right 4.180092e-01	k: 4083	n:10000
B4GALNT1   10000 perm   3 sec   (3929 perm/sec)   p_kst 4.083000e-01   p_cons 3.357000e-01   p_joint 4.704000e-01

Outputting figure to mutsig2_images.part000000000014/B4GALNT1.4_1642_10000_0.4083_0.3357_0.4704.png
                gene_name: B4GALNT1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 57 percent done.
ATXN7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.040300e-02	ci left: 3.672894e-01	ci right 3.863825e-01	k: 3768	n:10000
Cons ci ratio: 8.872880e-02	ci left: 1.560058e-01	ci right 1.705909e-01	k: 1632	n:10000
KS ci ratio: 2.196797e-02	ci left: 7.525160e-01	ci right 7.693318e-01	k: 7610	n:10000
ATXN7   10000 perm   2 sec   (4776 perm/sec)   p_kst 7.610000e-01   p_cons 1.632000e-01   p_joint 3.768000e-01

Outputting figure to mutsig2_images.part000000000014/ATXN7.3_2954_10000_0.761_0.1632_0.3768.png
                gene_name: ATXN7
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 59 percent done.
ATXN7L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.652327e-02	ci left: 4.054184e-01	ci right 4.248311e-01	k: 4151	n:10000
Cons ci ratio: 1.089973e-02	ci left: 9.230676e-01	ci right 9.332812e-01	k: 9283	n:10000
KS ci ratio: 7.961909e-02	ci left: 1.872743e-01	ci right 2.029038e-01	k: 1950	n:10000
ATXN7L2   10000 perm   2 sec   (4675 perm/sec)   p_kst 1.950000e-01   p_cons 9.283000e-01   p_joint 4.151000e-01

Outputting figure to mutsig2_images.part000000000014/ATXN7L2.3_2213_10000_0.195_0.9283_0.4151.png
                gene_name: ATXN7L2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 61 percent done.
AVL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.661620e-02	ci left: 2.485560e-01	ci right 2.657857e-01	k: 2571	n:10000
Cons ci ratio: 1.300347e-01	ci left: 7.785885e-02	ci right 8.878533e-02	k: 832	n:10000
KS ci ratio: 4.419792e-02	ci left: 4.304391e-01	ci right 4.499957e-01	k: 4402	n:10000
AVL9   10000 perm   2 sec   (5427 perm/sec)   p_kst 4.402000e-01   p_cons 8.320000e-02   p_joint 2.571000e-01

Joint ci ratio: 2.959233e-02	ci left: 4.603655e-01	ci right 4.742440e-01	k: 9346	n:20000
Cons ci ratio: 9.195033e-02	ci left: 7.945708e-02	ci right 8.716457e-02	k: 1665	n:20000
KS ci ratio: 3.124903e-02	ci left: 4.334042e-01	ci right 4.472132e-01	k: 8806	n:20000
AVL9   20000 perm   5 sec   (4256 perm/sec)   p_kst 4.403000e-01   p_cons 8.325000e-02   p_joint 4.673000e-01

Outputting figure to mutsig2_images.part000000000014/AVL9.3_2011_20000_0.4403_0.08325_0.4673.png
                gene_name: AVL9
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 63 percent done.
AVPR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.936692e-02	ci left: 4.879521e-01	ci right 5.076492e-01	k: 4978	n:10000
Cons ci ratio: 7.561906e-02	ci left: 2.037281e-01	ci right 2.198401e-01	k: 2117	n:10000
KS ci ratio: 2.307221e-02	ci left: 7.340122e-01	ci right 7.512462e-01	k: 7427	n:10000
AVPR1B   10000 perm   2 sec   (5645 perm/sec)   p_kst 7.427000e-01   p_cons 2.117000e-01   p_joint 4.978000e-01

Outputting figure to mutsig2_images.part000000000014/AVPR1B.3_1283_10000_0.7427_0.2117_0.4978.png
                gene_name: AVPR1B
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 65 percent done.
AWAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.199815e-02	ci left: 7.520101e-01	ci right 7.688379e-01	k: 7605	n:10000
KS ci ratio: 1.011016e-02	ci left: 9.327839e-01	ci right 9.423592e-01	k: 9377	n:10000
AWAT2   10000 perm   2 sec   (5505 perm/sec)   p_kst 9.377000e-01   p_cons 7.605000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/AWAT2.3_1030_10000_0.9377_0.7605_1.png
                gene_name: AWAT2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
B3GALT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.518891e-02	ci left: 4.195704e-01	ci right 4.390708e-01	k: 4293	n:10000
Cons ci ratio: 2.248092e-02	ci left: 7.439188e-01	ci right 7.609339e-01	k: 7525	n:10000
KS ci ratio: 8.519871e-02	ci left: 1.672051e-01	ci right 1.821849e-01	k: 1746	n:10000
B3GALT2   10000 perm   2 sec   (5289 perm/sec)   p_kst 1.746000e-01   p_cons 7.525000e-01   p_joint 4.293000e-01

Outputting figure to mutsig2_images.part000000000014/B3GALT2.3_1273_10000_0.1746_0.7525_0.4293.png
                gene_name: B3GALT2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 69 percent done.
B3GALTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.449668e-02	ci left: 5.537122e-01	ci right 5.732508e-01	k: 5635	n:10000
Cons ci ratio: 6.231794e-02	ci left: 2.745815e-01	ci right 2.923448e-01	k: 2834	n:10000
KS ci ratio: 2.066107e-02	ci left: 7.743839e-01	ci right 7.906512e-01	k: 7826	n:10000
B3GALTL   10000 perm   2 sec   (5709 perm/sec)   p_kst 7.826000e-01   p_cons 2.834000e-01   p_joint 5.635000e-01

Outputting figure to mutsig2_images.part000000000014/B3GALTL.3_1557_10000_0.7826_0.2834_0.5635.png
                gene_name: B3GALTL
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 70 percent done.
B4GALNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.387659e-02	ci left: 4.340298e-01	ci right 4.536029e-01	k: 4438	n:10000
Cons ci ratio: 3.517473e-02	ci left: 5.440928e-01	ci right 5.636758e-01	k: 5539	n:10000
KS ci ratio: 8.438058e-02	ci left: 1.699576e-01	ci right 1.850308e-01	k: 1774	n:10000
B4GALNT2   10000 perm   2 sec   (5698 perm/sec)   p_kst 1.774000e-01   p_cons 5.539000e-01   p_joint 4.438000e-01

Outputting figure to mutsig2_images.part000000000014/B4GALNT2.3_1763_10000_0.1774_0.5539_0.4438.png
                gene_name: B4GALNT2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 72 percent done.
B4GALT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.949308e-02	ci left: 4.863528e-01	ci right 5.060494e-01	k: 4962	n:10000
Cons ci ratio: 3.441262e-02	ci left: 5.549149e-01	ci right 5.744474e-01	k: 5647	n:10000
KS ci ratio: 4.502334e-02	ci left: 4.213649e-01	ci right 4.408752e-01	k: 4311	n:10000
B4GALT2   10000 perm   2 sec   (4453 perm/sec)   p_kst 4.311000e-01   p_cons 5.647000e-01   p_joint 4.962000e-01

Outputting figure to mutsig2_images.part000000000014/B4GALT2.3_1143_10000_0.4311_0.5647_0.4962.png
                gene_name: B4GALT2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 74 percent done.
BAALC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.679726e-02	ci left: 8.376546e-01	ci right 8.519439e-01	k: 8449	n:10000
Cons ci ratio: 2.763965e-02	ci left: 6.585713e-01	ci right 6.771308e-01	k: 6679	n:10000
KS ci ratio: 3.858751e-02	ci left: 4.979503e-01	ci right 5.176452e-01	k: 5078	n:10000
BAALC   10000 perm   2 sec   (5295 perm/sec)   p_kst 5.078000e-01   p_cons 6.679000e-01   p_joint 8.449000e-01

Outputting figure to mutsig2_images.part000000000014/BAALC.3_450_10000_0.5078_0.6679_0.8449.png
                gene_name: BAALC
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 76 percent done.
BACE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.420220e-02	ci left: 7.151243e-01	ci right 7.327451e-01	k: 7240	n:10000
KS ci ratio: 2.052749e-02	ci left: 7.766130e-01	ci right 7.928209e-01	k: 7848	n:10000
BACE2   10000 perm   2 sec   (5473 perm/sec)   p_kst 7.848000e-01   p_cons 7.240000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/BACE2.3_1593_10000_0.7848_0.724_1.png
                gene_name: BACE2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
ATPAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.615168e-02	ci left: 4.093044e-01	ci right 4.287428e-01	k: 4190	n:10000
KS ci ratio: 2.422036e-02	ci left: 7.148214e-01	ci right 7.324482e-01	k: 7237	n:10000
ATPAF1   10000 perm   2 sec   (6478 perm/sec)   p_kst 7.237000e-01   p_cons 4.190000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/ATPAF1.2_1023_10000_0.7237_0.419_1.png
                gene_name: ATPAF1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
AURKA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.228514e-01	ci left: 8.669623e-02	ci right 9.814248e-02	k: 923	n:10000
Cons ci ratio: 1.254102e-01	ci left: 8.339227e-02	ci right 9.464849e-02	k: 889	n:10000
KS ci ratio: 1.910384e-01	ci left: 3.652992e-02	ci right 4.434069e-02	k: 403	n:10000
AURKA   10000 perm   2 sec   (6201 perm/sec)   p_kst 4.030000e-02   p_cons 8.890000e-02   p_joint 9.230000e-02

Joint ci ratio: 7.850234e-02	ci left: 1.064817e-01	ci right 1.152318e-01	k: 2216	n:20000
Cons ci ratio: 8.640790e-02	ci left: 8.925437e-02	ci right 9.736432e-02	k: 1865	n:20000
KS ci ratio: 1.336294e-01	ci left: 3.848736e-02	ci right 4.404701e-02	k: 824	n:20000
AURKA   20000 perm   4 sec   (5441 perm/sec)   p_kst 4.120000e-02   p_cons 9.325000e-02   p_joint 1.108000e-01

Joint ci ratio: 6.400533e-02	ci left: 1.075650e-01	ci right 1.147105e-01	k: 3333	n:30000
Cons ci ratio: 7.023441e-02	ci left: 9.075327e-02	ci right 9.739225e-02	k: 2821	n:30000
KS ci ratio: 1.079984e-01	ci left: 3.979041e-02	ci right 4.436547e-02	k: 1261	n:30000
AURKA   30000 perm   6 sec   (5290 perm/sec)   p_kst 4.203333e-02   p_cons 9.403333e-02   p_joint 1.111000e-01

Joint ci ratio: 3.759913e-02	ci left: 2.096416e-01	ci right 2.177000e-01	k: 8546	n:40000
Cons ci ratio: 6.113636e-02	ci left: 9.034352e-02	ci right 9.606570e-02	k: 3727	n:40000
KS ci ratio: 9.320256e-02	ci left: 4.037279e-02	ci right 4.434399e-02	k: 1693	n:40000
AURKA   40000 perm   8 sec   (5164 perm/sec)   p_kst 4.232500e-02   p_cons 9.317500e-02   p_joint 2.136500e-01

Outputting figure to mutsig2_images.part000000000014/AURKA.2_1244_40000_0.042325_0.093175_0.21365.png
                gene_name: AURKA
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 81 percent done.
AVPI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.084766e-02	ci left: 2.842889e-01	ci right 3.022316e-01	k: 2932	n:10000
Cons ci ratio: 7.849617e-02	ci left: 1.917059e-01	ci right 2.074695e-01	k: 1995	n:10000
KS ci ratio: 8.639973e-02	ci left: 1.632741e-01	ci right 1.781182e-01	k: 1706	n:10000
AVPI1   10000 perm   2 sec   (5721 perm/sec)   p_kst 1.706000e-01   p_cons 1.995000e-01   p_joint 2.932000e-01

Outputting figure to mutsig2_images.part000000000014/AVPI1.2_452_10000_0.1706_0.1995_0.2932.png
                gene_name: AVPI1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 83 percent done.
AXIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.755887e-02	ci left: 5.114541e-01	ci right 5.311335e-01	k: 5213	n:10000
Cons ci ratio: 1.550197e-02	ci left: 8.579419e-01	ci right 8.714449e-01	k: 8648	n:10000
KS ci ratio: 1.414688e-01	ci left: 6.623521e-02	ci right 7.641622e-02	k: 712	n:10000
AXIN1   10000 perm   2 sec   (5595 perm/sec)   p_kst 7.120000e-02   p_cons 8.648000e-01   p_joint 5.213000e-01

Joint ci ratio: 3.105956e-02	ci left: 4.363988e-01	ci right 4.502176e-01	k: 8866	n:20000
Cons ci ratio: 1.092549e-02	ci left: 8.607440e-01	ci right 8.702494e-01	k: 17311	n:20000
KS ci ratio: 9.921401e-02	ci left: 6.879694e-02	ci right 7.602796e-02	k: 1447	n:20000
AXIN1   20000 perm   4 sec   (4927 perm/sec)   p_kst 7.235000e-02   p_cons 8.655500e-01   p_joint 4.433000e-01

Outputting figure to mutsig2_images.part000000000014/AXIN1.2_2629_20000_0.07235_0.86555_0.4433.png
                gene_name: AXIN1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 85 percent done.
AZGP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.472717e-03	ci left: 9.402467e-01	ci right 9.492921e-01	k: 9449	n:10000
Cons ci ratio: 3.340178e-02	ci left: 5.695523e-01	ci right 5.890015e-01	k: 5793	n:10000
KS ci ratio: 4.311172e-02	ci left: 4.427095e-01	ci right 4.623181e-01	k: 4525	n:10000
AZGP1   10000 perm   3 sec   (3706 perm/sec)   p_kst 4.525000e-01   p_cons 5.793000e-01   p_joint 9.449000e-01

Outputting figure to mutsig2_images.part000000000014/AZGP1.2_913_10000_0.4525_0.5793_0.9449.png
                gene_name: AZGP1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 87 percent done.
AZIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.788970e-03	ci left: 9.581703e-01	ci right 9.657575e-01	k: 9621	n:10000
Cons ci ratio: 4.877944e-02	ci left: 3.827127e-01	ci right 4.019500e-01	k: 3923	n:10000
KS ci ratio: 3.032889e-02	ci left: 6.159285e-01	ci right 6.349984e-01	k: 6255	n:10000
AZIN1   10000 perm   2 sec   (4902 perm/sec)   p_kst 6.255000e-01   p_cons 3.923000e-01   p_joint 9.621000e-01

Outputting figure to mutsig2_images.part000000000014/AZIN1.2_1387_10000_0.6255_0.3923_0.9621.png
                gene_name: AZIN1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 89 percent done.
B3GNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
Cons ci ratio: 1.950999e-01	ci left: 3.500453e-02	ci right 4.266711e-02	k: 387	n:10000
KS ci ratio: 6.392025e-02	ci left: 2.644834e-01	ci right 2.820489e-01	k: 2732	n:10000
B3GNT1   10000 perm   2 sec   (4220 perm/sec)   p_kst 2.732000e-01   p_cons 3.870000e-02   p_joint 7.340000e-02

Joint ci ratio: 1.178714e-01	ci left: 4.930341e-02	ci right 5.552753e-02	k: 1047	n:20000
Cons ci ratio: 1.474078e-01	ci left: 3.162770e-02	ci right 3.670891e-02	k: 682	n:20000
KS ci ratio: 4.474232e-02	ci left: 2.711035e-01	ci right 2.835613e-01	k: 5546	n:20000
B3GNT1   20000 perm   4 sec   (4471 perm/sec)   p_kst 2.773000e-01   p_cons 3.410000e-02   p_joint 5.235000e-02

Joint ci ratio: 1.165546e-01	ci left: 3.421187e-02	ci right 3.847853e-02	k: 1089	n:30000
Cons ci ratio: 1.211261e-01	ci left: 3.168658e-02	ci right 3.580436e-02	k: 1011	n:30000
KS ci ratio: 3.688920e-02	ci left: 2.683951e-01	ci right 2.785155e-01	k: 8203	n:30000
B3GNT1   30000 perm   7 sec   (4328 perm/sec)   p_kst 2.734333e-01   p_cons 3.370000e-02   p_joint 3.630000e-02

Joint ci ratio: 1.145879e-01	ci left: 2.679393e-02	ci right 3.007501e-02	k: 1136	n:40000
Cons ci ratio: 1.051138e-01	ci left: 3.183116e-02	ci right 3.538697e-02	k: 1343	n:40000
KS ci ratio: 3.194635e-02	ci left: 2.690860e-01	ci right 2.778469e-01	k: 10938	n:40000
B3GNT1   40000 perm   10 sec   (4137 perm/sec)   p_kst 2.734500e-01   p_cons 3.357500e-02   p_joint 2.840000e-02

Joint ci ratio: 9.271143e-02	ci left: 3.291733e-02	ci right 3.613700e-02	k: 1725	n:50000
Cons ci ratio: 9.419107e-02	ci left: 3.190084e-02	ci right 3.507362e-02	k: 1673	n:50000
KS ci ratio: 2.852022e-02	ci left: 2.702929e-01	ci right 2.781333e-01	k: 13710	n:50000
B3GNT1   50000 perm   12 sec   (4179 perm/sec)   p_kst 2.742000e-01   p_cons 3.346000e-02   p_joint 3.450000e-02

Outputting figure to mutsig2_images.part000000000014/B3GNT1.2_1256_50000_0.2742_0.03346_0.0345.png
                gene_name: B3GNT1
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 91 percent done.
B3GNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.014497e-01	ci left: 1.232714e-01	ci right 1.365450e-01	k: 1298	n:10000
KS ci ratio: 3.295844e-02	ci left: 5.760717e-01	ci right 5.954783e-01	k: 5858	n:10000
B3GNT2   10000 perm   2 sec   (5249 perm/sec)   p_kst 5.858000e-01   p_cons 1.298000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.139006e-02	ci left: 1.263036e-01	ci right 1.357040e-01	k: 2619	n:20000
KS ci ratio: 2.316509e-02	ci left: 5.818930e-01	ci right 5.955812e-01	k: 11775	n:20000
B3GNT2   20000 perm   4 sec   (5070 perm/sec)   p_kst 5.887500e-01   p_cons 1.309500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/B3GNT2.2_1198_20000_0.58875_0.13095_1.png
                gene_name: B3GNT2
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
B3GNT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.099475e-02	ci left: 2.832982e-01	ci right 3.012230e-01	k: 2922	n:10000
Cons ci ratio: 1.788656e-02	ci left: 8.201532e-01	ci right 8.350554e-01	k: 8277	n:10000
KS ci ratio: 1.261114e-01	ci left: 8.251809e-02	ci right 9.372320e-02	k: 880	n:10000
B3GNT9   10000 perm   2 sec   (6564 perm/sec)   p_kst 8.800000e-02   p_cons 8.277000e-01   p_joint 2.922000e-01

Joint ci ratio: 5.263680e-02	ci left: 2.113532e-01	ci right 2.228291e-01	k: 4341	n:20000
Cons ci ratio: 1.259175e-02	ci left: 8.236586e-01	ci right 8.341456e-01	k: 16579	n:20000
KS ci ratio: 9.056383e-02	ci left: 8.175806e-02	ci right 8.956289e-02	k: 1712	n:20000
B3GNT9   20000 perm   4 sec   (5565 perm/sec)   p_kst 8.560000e-02   p_cons 8.289500e-01   p_joint 2.170500e-01

Outputting figure to mutsig2_images.part000000000014/B3GNT9.2_1213_20000_0.0856_0.82895_0.21705.png
                gene_name: B3GNT9
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 94 percent done.
B4GALT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.481906e-02	ci left: 8.683587e-01	ci right 8.814221e-01	k: 8750	n:10000
Cons ci ratio: 5.831909e-02	ci left: 3.020326e-01	ci right 3.202776e-01	k: 3111	n:10000
KS ci ratio: 3.204988e-02	ci left: 5.896176e-01	ci right 6.089245e-01	k: 5993	n:10000
B4GALT5   10000 perm   3 sec   (3811 perm/sec)   p_kst 5.993000e-01   p_cons 3.111000e-01   p_joint 8.750000e-01

Outputting figure to mutsig2_images.part000000000014/B4GALT5.2_1203_10000_0.5993_0.3111_0.875.png
                gene_name: B4GALT5
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 96 percent done.
B9D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.387550e-02	ci left: 7.205765e-01	ci right 7.380897e-01	k: 7294	n:10000
KS ci ratio: 1.999184e-02	ci left: 7.855326e-01	ci right 8.014960e-01	k: 7936	n:10000
B9D1   10000 perm   2 sec   (5245 perm/sec)   p_kst 7.936000e-01   p_cons 7.294000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000014/B9D1.2_643_10000_0.7936_0.7294_1.png
                gene_name: B9D1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
BAAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.758897e-02	ci left: 5.110539e-01	ci right 5.307340e-01	k: 5209	n:10000
Cons ci ratio: 5.243755e-02	ci left: 3.489937e-01	ci right 3.678888e-01	k: 3584	n:10000
KS ci ratio: 1.332298e-02	ci left: 8.903638e-01	ci right 9.024042e-01	k: 8965	n:10000
BAAT   10000 perm   2 sec   (6078 perm/sec)   p_kst 8.965000e-01   p_cons 3.584000e-01   p_joint 5.209000e-01

Outputting figure to mutsig2_images.part000000000014/BAAT.2_1269_10000_0.8965_0.3584_0.5209.png
                gene_name: BAAT
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000014
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 14 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1551>
Subject: Job 9893837: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1551>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000015> was used as the working directory.
Started at Fri Oct  5 23:53:54 2012
Results reported at Sat Oct  6 00:04:45 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000015.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000015.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 15  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000015.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    722.00 sec.
    Max Memory :      3565 MB
    Max Swap   :      5921 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
15
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 15
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 15: processing genes 1263 - 1352
Calculating significance of each gene.
Using projection method.
1263	BACH1	2.407696e-01
1264	BACH2	9.621331e-02
1265	BAD	3.932840e-01
1266	BAG1	2.125502e-01
1267	BAG2	5.201240e-01
1268	BAG3	8.680802e-01
1269	BAG4	5.807382e-01
1270	BAG5	6.862830e-01
1271	BAGE	1
1272	BAGE4	1
1273	BAGE5	1
1274	BAHCC1	9.908723e-01
1275	BAHD1	7.825211e-01
1276	BAI1	9.701091e-01
1277	BAI2	6.675202e-01
In gene BAI3 the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 4649    n = 1	mu =   7.59e-07
1278	BAI3	3.664769e-06
1279	BAIAP2	8.018050e-01
1280	BAIAP2L1	2.915518e-01
1281	BAIAP2L2	9.175644e-01
1282	BAIAP3	9.834974e-01
1283	BAK1	5.157939e-01
1284	BAMBI	1.752568e-01
1285	BANF1	3.504042e-01
1286	BANF2	2.188560e-01
1287	BANK1	1.518853e-02
1288	BANP	8.682798e-01
1289	BAP1	8.863124e-01
1290	BARD1	4.178258e-02
1291	BARHL1	8.102871e-01
1292	BARHL2	2.286082e-01
1293	BARX1	1
1294	BARX2	5.631237e-01
1295	BASP1	1
1296	BAT1	8.733454e-01
1297	BAT2	4.767424e-01
1298	BAT2L1	8.713987e-01
1299	BAT2L2	5.351841e-01
1300	BAT3	9.860711e-01
1301	BAT4	3.587745e-01
1302	BAT5	3.810098e-01
1303	BATF	6.537515e-01
1304	BATF2	1.099949e-01
1305	BATF3	2.099193e-01
1306	BAX	5.017740e-01
1307	BAZ1A	9.052970e-01
1308	BAZ1B	6.577386e-01
1309	BAZ2A	9.012765e-01
1310	BAZ2B	9.834392e-01
1311	BBOX1	3.535719e-01
In gene BBS1 the following bins exceed PROBCAP:
    READ-AG-3605	categ 6	N = 1850    n = 1	mu =   1.38e-07
1312	BBS1	2.440511e-01
1313	BBS10	4.888758e-01
1314	BBS12	2.759819e-01
1315	BBS2	4.064184e-01
1316	BBS4	3.289008e-01
1317	BBS5	5.586935e-01
1318	BBS7	7.329872e-01
1319	BBS9	2.000805e-01
1320	BBX	3.876532e-01
1321	BCAM	3.022771e-01
1322	BCAN	8.471827e-01
1323	BCAP29	1.974258e-01
1324	BCAP31	1
1325	BCAR1	1
1326	BCAR3	8.974446e-01
1327	BCAS1	5.222395e-01
1328	BCAS2	1.329135e-01
1329	BCAS3	8.505158e-01
1330	BCAS4	3.413675e-01
1331	BCAT1	8.432978e-01
1332	BCAT2	8.768316e-01
1333	BCCIP	4.936620e-01
1334	BCDIN3D	2.629445e-01
1335	BCHE	1.591459e-04
1336	BCKDHA	6.346206e-01
1337	BCKDHB	5.832890e-01
1338	BCKDK	4.495718e-01
1339	BCL10	1.378090e-01
1340	BCL11A	4.262001e-01
1341	BCL11B	9.960295e-01
1342	BCL2	7.523130e-01
1343	BCL2A1	9.197138e-02
1344	BCL2L1	6.188190e-01
1345	BCL2L10	1
1346	BCL2L11	5.838050e-02
1347	BCL2L12	7.246271e-01
1348	BCL2L13	7.438203e-01
1349	BCL2L14	5.400604e-01
1350	BCL2L15	3.235875e-01
1351	BCL2L2	1
1352	BCL3	7.987757e-01
Done

Running MutSig 2:
Scatter job 15: processing genes 1263 - 1352
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
BAI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.390326e-02	ci left: 4.337306e-01	ci right 4.533023e-01	k: 4435	n:10000
KS ci ratio: 1.028188e-02	ci left: 9.307143e-01	ci right 9.404301e-01	k: 9357	n:10000
BAI3   10000 perm   3 sec   (3099 perm/sec)   p_kst 9.357000e-01   p_cons 4.435000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BAI3.23_4689_10000_0.9357_0.4435_1.png
                gene_name: BAI3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
BAT2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.830889e-02	ci left: 6.478024e-01	ci right 6.665060e-01	k: 6572	n:10000
Cons ci ratio: 3.350465e-02	ci left: 5.680480e-01	ci right 5.875066e-01	k: 5778	n:10000
KS ci ratio: 4.688919e-02	ci left: 4.016326e-01	ci right 4.210191e-01	k: 4113	n:10000
BAT2L2   10000 perm   3 sec   (2865 perm/sec)   p_kst 4.113000e-01   p_cons 5.778000e-01   p_joint 6.572000e-01

Outputting figure to mutsig2_images.part000000000015/BAT2L2.13_8585_10000_0.4113_0.5778_0.6572.png
                gene_name: BAT2L2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 4 percent done.
BAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.100344e-02	ci left: 1.493316e-01	ci right 1.636692e-01	k: 1564	n:10000
Cons ci ratio: 3.359399e-02	ci left: 5.667444e-01	ci right 5.862110e-01	k: 5765	n:10000
KS ci ratio: 1.257205e-01	ci left: 8.300372e-02	ci right 9.423727e-02	k: 885	n:10000
BAT2   10000 perm   3 sec   (3241 perm/sec)   p_kst 8.850000e-02   p_cons 5.765000e-01   p_joint 1.564000e-01

Joint ci ratio: 5.723096e-02	ci left: 1.845340e-01	ci right 1.954563e-01	k: 3799	n:20000
Cons ci ratio: 2.373406e-02	ci left: 5.700673e-01	ci right 5.838104e-01	k: 11539	n:20000
KS ci ratio: 9.062170e-02	ci left: 8.166013e-02	ci right 8.946085e-02	k: 1710	n:20000
BAT2   20000 perm   7 sec   (3045 perm/sec)   p_kst 8.550000e-02   p_cons 5.769500e-01   p_joint 1.899500e-01

Outputting figure to mutsig2_images.part000000000015/BAT2.11_6594_20000_0.0855_0.57695_0.18995.png
                gene_name: BAT2
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 5 percent done.
BANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.986464e-02	ci left: 6.231641e-01	ci right 6.421586e-01	k: 6327	n:10000
Cons ci ratio: 1.654028e-02	ci left: 8.417290e-01	ci right 8.558672e-01	k: 8489	n:10000
KS ci ratio: 4.973370e-02	ci left: 3.735570e-01	ci right 3.927111e-01	k: 3831	n:10000
BANK1   10000 perm   2 sec   (4632 perm/sec)   p_kst 3.831000e-01   p_cons 8.489000e-01   p_joint 6.327000e-01

Outputting figure to mutsig2_images.part000000000015/BANK1.10_2422_10000_0.3831_0.8489_0.6327.png
                gene_name: BANK1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 7 percent done.
BAZ2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.027820e-02	ci left: 7.807680e-01	ci right 7.968634e-01	k: 7889	n:10000
Cons ci ratio: 2.298170e-02	ci left: 7.355281e-01	ci right 7.527294e-01	k: 7442	n:10000
KS ci ratio: 2.754004e-02	ci left: 6.601821e-01	ci right 6.787191e-01	k: 6695	n:10000
BAZ2A   10000 perm   3 sec   (3572 perm/sec)   p_kst 6.695000e-01   p_cons 7.442000e-01   p_joint 7.889000e-01

Outputting figure to mutsig2_images.part000000000015/BAZ2A.10_5834_10000_0.6695_0.7442_0.7889.png
                gene_name: BAZ2A
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 9 percent done.
BAT2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.338610e-02	ci left: 7.287579e-01	ci right 7.461036e-01	k: 7375	n:10000
Cons ci ratio: 5.160444e-02	ci left: 3.563500e-01	ci right 3.753282e-01	k: 3658	n:10000
KS ci ratio: 2.181702e-02	ci left: 7.550454e-01	ci right 7.718009e-01	k: 7635	n:10000
BAT2L1   10000 perm   3 sec   (3241 perm/sec)   p_kst 7.635000e-01   p_cons 3.658000e-01   p_joint 7.375000e-01

Outputting figure to mutsig2_images.part000000000015/BAT2L1.9_6814_10000_0.7635_0.3658_0.7375.png
                gene_name: BAT2L1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 11 percent done.
BCHE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.560300e-02	ci left: 2.543910e-01	ci right 2.717472e-01	k: 2630	n:10000
Cons ci ratio: 1.223415e-01	ci left: 8.737675e-02	ci right 9.886154e-02	k: 930	n:10000
KS ci ratio: 2.144239e-02	ci left: 7.613202e-01	ci right 7.779225e-01	k: 7697	n:10000
BCHE   10000 perm   2 sec   (4876 perm/sec)   p_kst 7.697000e-01   p_cons 9.300000e-02   p_joint 2.630000e-01

Joint ci ratio: 4.946072e-02	ci left: 2.330532e-01	ci right 2.449228e-01	k: 4779	n:20000
Cons ci ratio: 8.542683e-02	ci left: 9.116655e-02	ci right 9.935156e-02	k: 1904	n:20000
KS ci ratio: 1.553588e-02	ci left: 7.549764e-01	ci right 7.668477e-01	k: 15219	n:20000
BCHE   20000 perm   4 sec   (4446 perm/sec)   p_kst 7.609500e-01   p_cons 9.520000e-02   p_joint 2.389500e-01

Outputting figure to mutsig2_images.part000000000015/BCHE.9_1821_20000_0.76095_0.0952_0.23895.png
                gene_name: BCHE
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 12 percent done.
BACH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.350497e-01	ci left: 7.242987e-02	ci right 8.301768e-02	k: 776	n:10000
Cons ci ratio: 1.258765e-01	ci left: 8.280946e-02	ci right 9.403165e-02	k: 883	n:10000
KS ci ratio: 1.148091e-01	ci left: 9.837525e-02	ci right 1.104563e-01	k: 1043	n:10000
BACH1   10000 perm   2 sec   (4978 perm/sec)   p_kst 1.043000e-01   p_cons 8.830000e-02   p_joint 7.760000e-02

Joint ci ratio: 9.464079e-02	ci left: 7.524916e-02	ci right 8.277377e-02	k: 1579	n:20000
Cons ci ratio: 9.088334e-02	ci left: 8.121946e-02	ci right 8.900166e-02	k: 1701	n:20000
KS ci ratio: 8.153307e-02	ci left: 9.936033e-02	ci right 1.078553e-01	k: 2071	n:20000
BACH1   20000 perm   4 sec   (4506 perm/sec)   p_kst 1.035500e-01   p_cons 8.505000e-02   p_joint 7.895000e-02

Outputting figure to mutsig2_images.part000000000015/BACH1.8_2227_20000_0.10355_0.08505_0.07895.png
                gene_name: BACH1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.083 

Current progress: 14 percent done.
BCL11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.659312e-02	ci left: 6.755913e-01	ci right 6.939010e-01	k: 6848	n:10000
Cons ci ratio: 1.216596e-02	ci left: 9.064824e-01	ci right 9.176761e-01	k: 9122	n:10000
KS ci ratio: 3.136703e-02	ci left: 5.999577e-01	ci right 6.191784e-01	k: 6096	n:10000
BCL11A   10000 perm   2 sec   (4856 perm/sec)   p_kst 6.096000e-01   p_cons 9.122000e-01   p_joint 6.848000e-01

Outputting figure to mutsig2_images.part000000000015/BCL11A.8_2630_10000_0.6096_0.9122_0.6848.png
                gene_name: BCL11A
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 16 percent done.
BACH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.645451e-02	ci left: 3.160206e-01	ci right 3.344813e-01	k: 3252	n:10000
Cons ci ratio: 2.761474e-02	ci left: 6.589740e-01	ci right 6.775279e-01	k: 6683	n:10000
KS ci ratio: 6.673845e-02	ci left: 2.478638e-01	ci right 2.650783e-01	k: 2564	n:10000
BACH2   10000 perm   2 sec   (4420 perm/sec)   p_kst 2.564000e-01   p_cons 6.683000e-01   p_joint 3.252000e-01

Outputting figure to mutsig2_images.part000000000015/BACH2.7_2542_10000_0.2564_0.6683_0.3252.png
                gene_name: BACH2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 18 percent done.
BARD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.685829e-02	ci left: 6.712594e-01	ci right 6.896353e-01	k: 6805	n:10000
Cons ci ratio: 4.221808e-02	ci left: 4.530892e-01	ci right 4.727324e-01	k: 4629	n:10000
KS ci ratio: 3.281605e-02	ci left: 5.781784e-01	ci right 5.975704e-01	k: 5879	n:10000
BARD1   10000 perm   2 sec   (5078 perm/sec)   p_kst 5.879000e-01   p_cons 4.629000e-01   p_joint 6.805000e-01

Outputting figure to mutsig2_images.part000000000015/BARD1.7_2378_10000_0.5879_0.4629_0.6805.png
                gene_name: BARD1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 20 percent done.
BAZ1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.681507e-02	ci left: 6.719646e-01	ci right 6.903298e-01	k: 6812	n:10000
Cons ci ratio: 5.397717e-02	ci left: 3.358779e-01	ci right 3.546124e-01	k: 3452	n:10000
KS ci ratio: 1.123944e-02	ci left: 9.187348e-01	ci right 9.292167e-01	k: 9241	n:10000
BAZ1A   10000 perm   3 sec   (3832 perm/sec)   p_kst 9.241000e-01   p_cons 3.452000e-01   p_joint 6.812000e-01

Outputting figure to mutsig2_images.part000000000015/BAZ1A.7_4775_10000_0.9241_0.3452_0.6812.png
                gene_name: BAZ1A
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 21 percent done.
BBX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.694647e-02	ci left: 5.196599e-01	ci right 5.393230e-01	k: 5295	n:10000
Cons ci ratio: 4.245605e-03	ci left: 9.862119e-01	ci right 9.904965e-01	k: 9885	n:10000
KS ci ratio: 5.440970e-02	ci left: 3.323022e-01	ci right 3.509901e-01	k: 3416	n:10000
BBX   10000 perm   2 sec   (4490 perm/sec)   p_kst 3.416000e-01   p_cons 9.885000e-01   p_joint 5.295000e-01

Outputting figure to mutsig2_images.part000000000015/BBX.7_2886_10000_0.3416_0.9885_0.5295.png
                gene_name: BBX
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 23 percent done.
BAI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.921176e-02	ci left: 3.785325e-01	ci right 3.977327e-01	k: 3881	n:10000
Cons ci ratio: 6.070122e-02	ci left: 2.852798e-01	ci right 3.032402e-01	k: 2942	n:10000
KS ci ratio: 5.669974e-02	ci left: 3.141351e-01	ci right 3.325679e-01	k: 3233	n:10000
BAI2   10000 perm   3 sec   (3959 perm/sec)   p_kst 3.233000e-01   p_cons 2.942000e-01   p_joint 3.881000e-01

Outputting figure to mutsig2_images.part000000000015/BAI2.6_4882_10000_0.3233_0.2942_0.3881.png
                gene_name: BAI2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 25 percent done.
BAZ1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.644533e-02	ci left: 5.264667e-01	ci right 5.461122e-01	k: 5363	n:10000
KS ci ratio: 1.473093e-02	ci left: 8.696873e-01	ci right 8.826927e-01	k: 8763	n:10000
BAZ1B   10000 perm   3 sec   (3667 perm/sec)   p_kst 8.763000e-01   p_cons 5.363000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BAZ1B.6_4528_10000_0.8763_0.5363_1.png
                gene_name: BAZ1B
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
BAZ2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.813094e-03	ci left: 9.363056e-01	ci right 9.456355e-01	k: 9411	n:10000
KS ci ratio: 2.413562e-02	ci left: 7.162348e-01	ci right 7.338340e-01	k: 7251	n:10000
BAZ2B   10000 perm   3 sec   (3573 perm/sec)   p_kst 7.251000e-01   p_cons 9.411000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BAZ2B.6_6647_10000_0.7251_0.9411_1.png
                gene_name: BAZ2B
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
BBS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.332662e-02	ci left: 1.735958e-01	ci right 1.887903e-01	k: 1811	n:10000
Cons ci ratio: 2.166412e-01	ci left: 2.825837e-02	ci right 3.521793e-02	k: 316	n:10000
KS ci ratio: 2.211887e-02	ci left: 7.499869e-01	ci right 7.668623e-01	k: 7585	n:10000
BBS2   10000 perm   2 sec   (5060 perm/sec)   p_kst 7.585000e-01   p_cons 3.160000e-02   p_joint 1.811000e-01

Joint ci ratio: 7.380830e-02	ci left: 1.190194e-01	ci right 1.281903e-01	k: 2471	n:20000
Cons ci ratio: 1.467418e-01	ci left: 3.191701e-02	ci right 3.701950e-02	k: 688	n:20000
KS ci ratio: 1.579198e-02	ci left: 7.489272e-01	ci right 7.608986e-01	k: 15099	n:20000
BBS2   20000 perm   4 sec   (4569 perm/sec)   p_kst 7.549500e-01   p_cons 3.440000e-02   p_joint 1.235500e-01

Joint ci ratio: 5.594557e-02	ci left: 1.366848e-01	ci right 1.445850e-01	k: 4218	n:30000
Cons ci ratio: 1.206947e-01	ci left: 3.191308e-02	ci right 3.604448e-02	k: 1018	n:30000
KS ci ratio: 1.318738e-02	ci left: 7.415706e-01	ci right 7.514483e-01	k: 22396	n:30000
BBS2   30000 perm   7 sec   (4388 perm/sec)   p_kst 7.465333e-01   p_cons 3.393333e-02   p_joint 1.406000e-01

Joint ci ratio: 4.570202e-02	ci left: 1.517880e-01	ci right 1.589121e-01	k: 6213	n:40000
Cons ci ratio: 1.047915e-01	ci left: 3.202608e-02	ci right 3.559202e-02	k: 1351	n:40000
KS ci ratio: 1.045099e-02	ci left: 7.745237e-01	ci right 7.826858e-01	k: 31145	n:40000
BBS2   40000 perm   9 sec   (4275 perm/sec)   p_kst 7.786250e-01   p_cons 3.377500e-02   p_joint 1.553250e-01

Joint ci ratio: 4.171496e-02	ci left: 1.469599e-01	ci right 1.532408e-01	k: 7504	n:50000
Cons ci ratio: 9.466012e-02	ci left: 3.158816e-02	ci right 3.474635e-02	k: 1657	n:50000
KS ci ratio: 9.817943e-03	ci left: 7.574781e-01	ci right 7.649716e-01	k: 38062	n:50000
BBS2   50000 perm   12 sec   (4183 perm/sec)   p_kst 7.612400e-01   p_cons 3.314000e-02   p_joint 1.500800e-01

Outputting figure to mutsig2_images.part000000000015/BBS2.6_2234_50000_0.76124_0.03314_0.15008.png
                gene_name: BBS2
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 30 percent done.
BBS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.555493e-02	ci left: 8.571254e-01	ci right 8.706618e-01	k: 8640	n:10000
Cons ci ratio: 3.467229e-02	ci left: 5.512068e-01	ci right 5.707577e-01	k: 5610	n:10000
KS ci ratio: 2.650079e-02	ci left: 6.771026e-01	ci right 6.953888e-01	k: 6863	n:10000
BBS7   10000 perm   2 sec   (5144 perm/sec)   p_kst 6.863000e-01   p_cons 5.610000e-01   p_joint 8.640000e-01

Outputting figure to mutsig2_images.part000000000015/BBS7.6_2229_10000_0.6863_0.561_0.864.png
                gene_name: BBS7
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 32 percent done.
BBS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.680851e-02	ci left: 2.474683e-01	ci right 2.646740e-01	k: 2560	n:10000
Cons ci ratio: 1.287741e-01	ci left: 7.931430e-02	ci right 9.032897e-02	k: 847	n:10000
KS ci ratio: 2.535597e-02	ci left: 6.959529e-01	ci right 7.139275e-01	k: 7050	n:10000
BBS9   10000 perm   2 sec   (4824 perm/sec)   p_kst 7.050000e-01   p_cons 8.470000e-02   p_joint 2.560000e-01

Joint ci ratio: 5.059497e-02	ci left: 2.249750e-01	ci right 2.367033e-01	k: 4616	n:20000
Cons ci ratio: 8.928718e-02	ci left: 8.396194e-02	ci right 9.185834e-02	k: 1757	n:20000
KS ci ratio: 1.669260e-02	ci left: 7.276664e-01	ci right 7.399656e-01	k: 14677	n:20000
BBS9   20000 perm   5 sec   (4359 perm/sec)   p_kst 7.338500e-01   p_cons 8.785000e-02   p_joint 2.308000e-01

Outputting figure to mutsig2_images.part000000000015/BBS9.6_2752_20000_0.73385_0.08785_0.2308.png
                gene_name: BBS9
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 34 percent done.
BAG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.418978e-01	ci left: 6.584842e-02	ci right 7.600325e-02	k: 708	n:10000
Cons ci ratio: 1.038522e-01	ci left: 1.181869e-01	ci right 1.312326e-01	k: 1246	n:10000
KS ci ratio: 1.495306e-01	ci left: 5.947341e-02	ci right 6.918228e-02	k: 642	n:10000
BAG5   10000 perm   2 sec   (5629 perm/sec)   p_kst 6.420000e-02   p_cons 1.246000e-01   p_joint 7.080000e-02

Joint ci ratio: 1.138029e-01	ci left: 5.280458e-02	ci right 5.922527e-02	k: 1119	n:20000
Cons ci ratio: 7.392778e-02	ci left: 1.186750e-01	ci right 1.278348e-01	k: 2464	n:20000
KS ci ratio: 1.067153e-01	ci left: 5.981772e-02	ci right 6.660995e-02	k: 1263	n:20000
BAG5   20000 perm   4 sec   (5056 perm/sec)   p_kst 6.315000e-02   p_cons 1.232000e-01   p_joint 5.595000e-02

Joint ci ratio: 1.211880e-01	ci left: 3.165422e-02	ci right 3.577006e-02	k: 1010	n:30000
Cons ci ratio: 6.021827e-02	ci left: 1.200272e-01	ci right 1.275125e-01	k: 3712	n:30000
KS ci ratio: 8.628624e-02	ci left: 6.158266e-02	ci right 6.716874e-02	k: 1930	n:30000
BAG5   30000 perm   6 sec   (4840 perm/sec)   p_kst 6.433333e-02   p_cons 1.237333e-01   p_joint 3.366667e-02

Joint ci ratio: 1.085013e-01	ci left: 2.988292e-02	ci right 3.333552e-02	k: 1263	n:40000
Cons ci ratio: 5.199899e-02	ci left: 1.211558e-01	ci right 1.276488e-01	k: 4975	n:40000
KS ci ratio: 7.352296e-02	ci left: 6.390537e-02	ci right 6.880782e-02	k: 2653	n:40000
BAG5   40000 perm   9 sec   (4689 perm/sec)   p_kst 6.632500e-02   p_cons 1.243750e-01   p_joint 3.157500e-02

Joint ci ratio: 9.282289e-02	ci left: 3.283913e-02	ci right 3.605522e-02	k: 1721	n:50000
Cons ci ratio: 4.644120e-02	ci left: 1.218160e-01	ci right 1.276276e-01	k: 6235	n:50000
KS ci ratio: 6.590482e-02	ci left: 6.389807e-02	ci right 6.827247e-02	k: 3303	n:50000
BAG5   50000 perm   11 sec   (4563 perm/sec)   p_kst 6.606000e-02   p_cons 1.247000e-01   p_joint 3.442000e-02

Outputting figure to mutsig2_images.part000000000015/BAG5.4_1475_50000_0.06606_0.1247_0.03442.png
                gene_name: BAG5
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 36 percent done.
BAIAP2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.261065e-02	ci left: 4.484977e-01	ci right 4.681266e-01	k: 4583	n:10000
Cons ci ratio: 7.679345e-02	ci left: 1.987011e-01	ci right 2.146701e-01	k: 2066	n:10000
KS ci ratio: 1.956399e-02	ci left: 7.926319e-01	ci right 8.083926e-01	k: 8006	n:10000
BAIAP2L1   10000 perm   2 sec   (5654 perm/sec)   p_kst 8.006000e-01   p_cons 2.066000e-01   p_joint 4.583000e-01

Outputting figure to mutsig2_images.part000000000015/BAIAP2L1.4_1592_10000_0.8006_0.2066_0.4583.png
                gene_name: BAIAP2L1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 38 percent done.
BAMBI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.769821e-02	ci left: 8.232038e-01	ci right 8.380031e-01	k: 8307	n:10000
Cons ci ratio: 5.305884e-02	ci left: 3.436272e-01	ci right 3.624585e-01	k: 3530	n:10000
KS ci ratio: 1.584476e-02	ci left: 8.526363e-01	ci right 8.663535e-01	k: 8596	n:10000
BAMBI   10000 perm   2 sec   (5613 perm/sec)   p_kst 8.596000e-01   p_cons 3.530000e-01   p_joint 8.307000e-01

Outputting figure to mutsig2_images.part000000000015/BAMBI.4_795_10000_0.8596_0.353_0.8307.png
                gene_name: BAMBI
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 39 percent done.
BARHL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.909827e-02	ci left: 6.352285e-01	ci right 6.540872e-01	k: 6447	n:10000
Cons ci ratio: 2.483577e-03	ci left: 9.946724e-01	ci right 9.972253e-01	k: 9961	n:10000
KS ci ratio: 5.653175e-02	ci left: 3.154251e-01	ci right 3.338771e-01	k: 3246	n:10000
BARHL2   10000 perm   2 sec   (5817 perm/sec)   p_kst 3.246000e-01   p_cons 9.961000e-01   p_joint 6.447000e-01

Outputting figure to mutsig2_images.part000000000015/BARHL2.4_1176_10000_0.3246_0.9961_0.6447.png
                gene_name: BARHL2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 41 percent done.
BBS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.899674e-02	ci left: 6.368375e-01	ci right 6.556772e-01	k: 6463	n:10000
Cons ci ratio: 6.778681e-02	ci left: 2.420311e-01	ci right 2.591144e-01	k: 2505	n:10000
KS ci ratio: 5.905110e-03	ci left: 9.748256e-01	ci right 9.806915e-01	k: 9779	n:10000
BBS1   10000 perm   2 sec   (5343 perm/sec)   p_kst 9.779000e-01   p_cons 2.505000e-01   p_joint 6.463000e-01

Outputting figure to mutsig2_images.part000000000015/BBS1.4_1850_10000_0.9779_0.2505_0.6463.png
                gene_name: BBS1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 43 percent done.
BBS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.465227e-02	ci left: 2.600302e-01	ci right 2.775047e-01	k: 2687	n:10000
Cons ci ratio: 1.025873e-01	ci left: 1.208265e-01	ci right 1.339914e-01	k: 1273	n:10000
KS ci ratio: 3.773228e-02	ci left: 5.091529e-01	ci right 5.288360e-01	k: 5190	n:10000
BBS12   10000 perm   2 sec   (5073 perm/sec)   p_kst 5.190000e-01   p_cons 1.273000e-01   p_joint 2.687000e-01

Joint ci ratio: 5.024839e-02	ci left: 2.274031e-01	ci right 2.391745e-01	k: 4665	n:20000
Cons ci ratio: 7.180058e-02	ci left: 1.250236e-01	ci right 1.343844e-01	k: 2593	n:20000
KS ci ratio: 2.676024e-02	ci left: 5.105976e-01	ci right 5.244973e-01	k: 10351	n:20000
BBS12   20000 perm   4 sec   (4603 perm/sec)   p_kst 5.175500e-01   p_cons 1.296500e-01   p_joint 2.332500e-01

Outputting figure to mutsig2_images.part000000000015/BBS12.4_2137_20000_0.51755_0.12965_0.23325.png
                gene_name: BBS12
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 45 percent done.
BCAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.395987e-02	ci left: 8.811437e-01	ci right 8.936296e-01	k: 8875	n:10000
KS ci ratio: 1.964358e-02	ci left: 7.913132e-01	ci right 8.071121e-01	k: 7993	n:10000
BCAM   10000 perm   2 sec   (5663 perm/sec)   p_kst 7.993000e-01   p_cons 8.875000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BCAM.4_1951_10000_0.7993_0.8875_1.png
                gene_name: BCAM
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
BAHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.275845e-02	ci left: 7.392680e-01	ci right 7.563874e-01	k: 7479	n:10000
KS ci ratio: 2.240249e-02	ci left: 7.452334e-01	ci right 7.622186e-01	k: 7538	n:10000
BAHD1   10000 perm   2 sec   (5425 perm/sec)   p_kst 7.538000e-01   p_cons 7.479000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BAHD1.3_2367_10000_0.7538_0.7479_1.png
                gene_name: BAHD1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
BANP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.625577e-02	ci left: 8.462127e-01	ci right 8.601809e-01	k: 8533	n:10000
KS ci ratio: 2.182909e-02	ci left: 7.548431e-01	ci right 7.716033e-01	k: 7633	n:10000
BANP   10000 perm   2 sec   (5963 perm/sec)   p_kst 7.633000e-01   p_cons 8.533000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BANP.3_1663_10000_0.7633_0.8533_1.png
                gene_name: BANP
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
BAT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.927630e-02	ci left: 6.324129e-01	ci right 6.513044e-01	k: 6419	n:10000
Cons ci ratio: 6.198219e-02	ci left: 2.767603e-01	ci right 2.945647e-01	k: 2856	n:10000
KS ci ratio: 9.563197e-03	ci left: 9.392090e-01	ci right 9.483304e-01	k: 9439	n:10000
BAT5   10000 perm   2 sec   (5859 perm/sec)   p_kst 9.439000e-01   p_cons 2.856000e-01   p_joint 6.419000e-01

Outputting figure to mutsig2_images.part000000000015/BAT5.3_1918_10000_0.9439_0.2856_0.6419.png
                gene_name: BAT5
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 52 percent done.
BATF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.040429e-01	ci left: 1.177960e-01	ci right 1.308238e-01	k: 1242	n:10000
Cons ci ratio: 1.068561e-02	ci left: 9.257524e-01	ci right 9.357949e-01	k: 9309	n:10000
KS ci ratio: 2.209987e-01	ci left: 2.712237e-02	ci right 3.395474e-02	k: 304	n:10000
BATF2   10000 perm   2 sec   (6165 perm/sec)   p_kst 3.040000e-02   p_cons 9.309000e-01   p_joint 1.242000e-01

Joint ci ratio: 9.153144e-02	ci left: 8.014239e-02	ci right 8.787906e-02	k: 1679	n:20000
Cons ci ratio: 7.076272e-03	ci left: 9.354400e-01	ci right 9.421317e-01	k: 18777	n:20000
KS ci ratio: 1.605304e-01	ci left: 2.662195e-02	ci right 3.131633e-02	k: 578	n:20000
BATF2   20000 perm   4 sec   (5452 perm/sec)   p_kst 2.890000e-02   p_cons 9.388500e-01   p_joint 8.395000e-02

Joint ci ratio: 9.372084e-02	ci left: 5.251192e-02	ci right 5.770799e-02	k: 1652	n:30000
Cons ci ratio: 5.766257e-03	ci left: 9.363004e-01	ci right 9.417476e-01	k: 28172	n:30000
KS ci ratio: 1.263916e-01	ci left: 2.909993e-02	ci right 3.305824e-02	k: 931	n:30000
BATF2   30000 perm   6 sec   (5210 perm/sec)   p_kst 3.103333e-02   p_cons 9.390667e-01   p_joint 5.506667e-02

Joint ci ratio: 6.434756e-02	ci left: 8.216154e-02	ci right 8.764890e-02	k: 3395	n:40000
Cons ci ratio: 5.255150e-03	ci left: 9.304549e-01	ci right 9.353820e-01	k: 37318	n:40000
KS ci ratio: 1.097630e-01	ci left: 2.920146e-02	ci right 3.261709e-02	k: 1235	n:40000
BATF2   40000 perm   8 sec   (5036 perm/sec)   p_kst 3.087500e-02   p_cons 9.329500e-01   p_joint 8.487500e-02

Joint ci ratio: 5.961953e-02	ci left: 7.720249e-02	ci right 8.196645e-02	k: 3978	n:50000
Cons ci ratio: 4.668972e-03	ci left: 9.315651e-01	ci right 9.359444e-01	k: 46689	n:50000
KS ci ratio: 9.877054e-02	ci left: 2.902957e-02	ci right 3.206526e-02	k: 1526	n:50000
BATF2   50000 perm   10 sec   (4908 perm/sec)   p_kst 3.052000e-02   p_cons 9.337800e-01   p_joint 7.956000e-02

Outputting figure to mutsig2_images.part000000000015/BATF2.3_837_50000_0.03052_0.93378_0.07956.png
                gene_name: BATF2
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.082 

Current progress: 54 percent done.
BBOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.235652e-02	ci left: 2.186229e-01	ci right 2.351365e-01	k: 2268	n:10000
Cons ci ratio: 4.790096e-02	ci left: 3.913742e-01	ci right 4.106835e-01	k: 4010	n:10000
KS ci ratio: 8.475817e-02	ci left: 1.686795e-01	ci right 1.837096e-01	k: 1761	n:10000
BBOX1   10000 perm   2 sec   (6193 perm/sec)   p_kst 1.761000e-01   p_cons 4.010000e-01   p_joint 2.268000e-01

Outputting figure to mutsig2_images.part000000000015/BBOX1.3_1192_10000_0.1761_0.401_0.2268.png
                gene_name: BBOX1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 55 percent done.
BBS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.940461e-02	ci left: 7.952698e-01	ci right 8.109533e-01	k: 8032	n:10000
KS ci ratio: 2.500901e-02	ci left: 7.017023e-01	ci right 7.195748e-01	k: 7107	n:10000
BBS4   10000 perm   2 sec   (5616 perm/sec)   p_kst 7.107000e-01   p_cons 8.032000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BBS4.3_1624_10000_0.7107_0.8032_1.png
                gene_name: BBS4
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
BCAP29
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
Cons ci ratio: 1.072707e-01	ci left: 1.114460e-01	ci right 1.241776e-01	k: 1177	n:10000
KS ci ratio: 1.363864e-01	ci left: 7.107385e-02	ci right 8.157455e-02	k: 762	n:10000
BCAP29   10000 perm   2 sec   (6412 perm/sec)   p_kst 7.620000e-02   p_cons 1.177000e-01   p_joint 4.280000e-02

Joint ci ratio: 8.550126e-02	ci left: 9.101944e-02	ci right 9.919871e-02	k: 1901	n:20000
Cons ci ratio: 7.579852e-02	ci left: 1.134614e-01	ci right 1.224500e-01	k: 2358	n:20000
KS ci ratio: 9.873701e-02	ci left: 6.943202e-02	ci right 7.669269e-02	k: 1460	n:20000
BCAP29   20000 perm   4 sec   (5647 perm/sec)   p_kst 7.300000e-02   p_cons 1.179000e-01   p_joint 9.505000e-02

Outputting figure to mutsig2_images.part000000000015/BCAP29.2_1079_20000_0.073_0.1179_0.09505.png
                gene_name: BCAP29
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.099 

Current progress: 59 percent done.
BCAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.744677e-02	ci left: 6.616923e-01	ci right 6.802080e-01	k: 6710	n:10000
KS ci ratio: 9.909943e-03	ci left: 9.351657e-01	ci right 9.445760e-01	k: 9400	n:10000
BCAS1   10000 perm   2 sec   (6251 perm/sec)   p_kst 9.400000e-01   p_cons 6.710000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BCAS1.3_1799_10000_0.94_0.671_1.png
                gene_name: BCAS1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
BCAS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.932931e-01	ci left: 3.567168e-02	ci right 4.339951e-02	k: 394	n:10000
Cons ci ratio: 2.989652e-01	ci left: 1.437251e-02	ci right 1.951444e-02	k: 168	n:10000
KS ci ratio: 1.167540e-01	ci left: 9.535564e-02	ci right 1.072778e-01	k: 1012	n:10000
BCAS3   10000 perm   2 sec   (5293 perm/sec)   p_kst 1.012000e-01   p_cons 1.680000e-02   p_joint 3.940000e-02

Joint ci ratio: 1.255857e-01	ci left: 4.352588e-02	ci right 4.940689e-02	k: 928	n:20000
Cons ci ratio: 2.092125e-01	ci left: 1.544355e-02	ci right 1.909873e-02	k: 344	n:20000
KS ci ratio: 8.201966e-02	ci left: 9.828040e-02	ci right 1.067356e-01	k: 2049	n:20000
BCAS3   20000 perm   5 sec   (4432 perm/sec)   p_kst 1.024500e-01   p_cons 1.720000e-02   p_joint 4.640000e-02

Joint ci ratio: 7.564036e-02	ci left: 7.905027e-02	ci right 8.529760e-02	k: 2464	n:30000
Cons ci ratio: 1.666913e-01	ci left: 1.658962e-02	ci right 1.963806e-02	k: 542	n:30000
KS ci ratio: 6.758306e-02	ci left: 9.741531e-02	ci right 1.042622e-01	k: 3024	n:30000
BCAS3   30000 perm   7 sec   (4323 perm/sec)   p_kst 1.008000e-01   p_cons 1.806667e-02   p_joint 8.213333e-02

Joint ci ratio: 8.237838e-02	ci left: 5.136376e-02	ci right 5.580133e-02	k: 2142	n:40000
Cons ci ratio: 1.458017e-01	ci left: 1.645451e-02	ci right 1.906617e-02	k: 709	n:40000
KS ci ratio: 5.723799e-02	ci left: 1.019380e-01	ci right 1.079695e-01	k: 4197	n:40000
BCAS3   40000 perm   9 sec   (4255 perm/sec)   p_kst 1.049250e-01   p_cons 1.772500e-02   p_joint 5.355000e-02

Joint ci ratio: 7.289075e-02	ci left: 5.268343e-02	ci right 5.668847e-02	k: 2733	n:50000
Cons ci ratio: 1.312779e-01	ci left: 1.636874e-02	ci right 1.868776e-02	k: 875	n:50000
KS ci ratio: 5.148352e-02	ci left: 1.012187e-01	ci right 1.065873e-01	k: 5194	n:50000
BCAS3   50000 perm   12 sec   (4182 perm/sec)   p_kst 1.038800e-01   p_cons 1.750000e-02   p_joint 5.466000e-02

Joint ci ratio: 5.321031e-02	ci left: 8.073854e-02	ci right 8.516857e-02	k: 4976	n:60000
Cons ci ratio: 1.197936e-01	ci left: 1.648203e-02	ci right 1.859834e-02	k: 1051	n:60000
KS ci ratio: 4.695585e-02	ci left: 1.016178e-01	ci right 1.065206e-01	k: 6243	n:60000
BCAS3   60000 perm   15 sec   (4107 perm/sec)   p_kst 1.040500e-01   p_cons 1.751667e-02   p_joint 8.293333e-02

Joint ci ratio: 6.894464e-02	ci left: 4.261890e-02	ci right 4.567618e-02	k: 3089	n:70000
Cons ci ratio: 1.104655e-01	ci left: 1.669439e-02	ci right 1.866017e-02	k: 1236	n:70000
KS ci ratio: 4.358856e-02	ci left: 1.013094e-01	ci right 1.058378e-01	k: 7249	n:70000
BCAS3   70000 perm   17 sec   (4038 perm/sec)   p_kst 1.035571e-01   p_cons 1.765714e-02   p_joint 4.412857e-02

Joint ci ratio: 6.497873e-02	ci left: 4.209684e-02	ci right 4.493638e-02	k: 3480	n:80000
Cons ci ratio: 1.035069e-01	ci left: 1.670010e-02	ci right 1.853512e-02	k: 1408	n:80000
KS ci ratio: 4.097147e-02	ci left: 1.005675e-01	ci right 1.047864e-01	k: 8213	n:80000
BCAS3   80000 perm   20 sec   (3962 perm/sec)   p_kst 1.026625e-01   p_cons 1.760000e-02   p_joint 4.350000e-02

Joint ci ratio: 6.155173e-02	ci left: 4.179336e-02	ci right 4.445841e-02	k: 3880	n:90000
Cons ci ratio: 9.721729e-02	ci left: 1.688109e-02	ci right 1.861686e-02	k: 1596	n:90000
KS ci ratio: 3.886956e-02	ci left: 9.955638e-02	ci right 1.035138e-01	k: 9137	n:90000
BCAS3   90000 perm   23 sec   (3894 perm/sec)   p_kst 1.015222e-01   p_cons 1.773333e-02   p_joint 4.311111e-02

Outputting figure to mutsig2_images.part000000000015/BCAS3.3_2883_90000_0.10152_0.017733_0.043111.png
                gene_name: BCAS3
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.044 

Current progress: 62 percent done.
BCDIN3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.110698e-02	ci left: 1.490372e-01	ci right 1.633637e-01	k: 1561	n:10000
Cons ci ratio: 4.495000e-02	ci left: 4.221625e-01	ci right 4.416772e-01	k: 4319	n:10000
KS ci ratio: 1.334730e-01	ci left: 7.407714e-02	ci right 8.476939e-02	k: 793	n:10000
BCDIN3D   10000 perm   2 sec   (6479 perm/sec)   p_kst 7.930000e-02   p_cons 4.319000e-01   p_joint 1.561000e-01

Joint ci ratio: 5.306632e-02	ci left: 2.086300e-01	ci right 2.200532e-01	k: 4286	n:20000
Cons ci ratio: 3.169676e-02	ci left: 4.264175e-01	ci right 4.402019e-01	k: 8666	n:20000
KS ci ratio: 9.393256e-02	ci left: 7.632531e-02	ci right 8.389730e-02	k: 1601	n:20000
BCDIN3D   20000 perm   3 sec   (5759 perm/sec)   p_kst 8.005000e-02   p_cons 4.333000e-01   p_joint 2.143000e-01

Outputting figure to mutsig2_images.part000000000015/BCDIN3D.3_887_20000_0.08005_0.4333_0.2143.png
                gene_name: BCDIN3D
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 64 percent done.
BCKDHA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.231794e-02	ci left: 2.745815e-01	ci right 2.923448e-01	k: 2834	n:10000
Cons ci ratio: 1.109888e-01	ci left: 1.047120e-01	ci right 1.171157e-01	k: 1108	n:10000
KS ci ratio: 5.655754e-02	ci left: 3.152266e-01	ci right 3.336757e-01	k: 3244	n:10000
BCKDHA   10000 perm   2 sec   (6170 perm/sec)   p_kst 3.244000e-01   p_cons 1.108000e-01   p_joint 2.834000e-01

Joint ci ratio: 3.376179e-02	ci left: 3.957928e-01	ci right 4.094355e-01	k: 8052	n:20000
Cons ci ratio: 7.787170e-02	ci left: 1.080541e-01	ci right 1.168589e-01	k: 2248	n:20000
KS ci ratio: 4.023524e-02	ci left: 3.153268e-01	ci right 3.283250e-01	k: 6436	n:20000
BCKDHA   20000 perm   4 sec   (5477 perm/sec)   p_kst 3.218000e-01   p_cons 1.124000e-01   p_joint 4.026000e-01

Outputting figure to mutsig2_images.part000000000015/BCKDHA.3_1374_20000_0.3218_0.1124_0.4026.png
                gene_name: BCKDHA
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 66 percent done.
BCKDK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.221808e-02	ci left: 4.530892e-01	ci right 4.727324e-01	k: 4629	n:10000
Cons ci ratio: 8.889150e-02	ci left: 1.555149e-01	ci right 1.700821e-01	k: 1627	n:10000
KS ci ratio: 1.399478e-02	ci left: 8.806319e-01	ci right 8.931418e-01	k: 8870	n:10000
BCKDK   10000 perm   2 sec   (6159 perm/sec)   p_kst 8.870000e-01   p_cons 1.627000e-01   p_joint 4.629000e-01

Outputting figure to mutsig2_images.part000000000015/BCKDK.3_1287_10000_0.887_0.1627_0.4629.png
                gene_name: BCKDK
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 68 percent done.
BCL10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.158024e-01	ci left: 9.681653e-02	ci right 1.088160e-01	k: 1027	n:10000
Cons ci ratio: 1.594356e-01	ci left: 5.243929e-02	ci right 6.162089e-02	k: 569	n:10000
KS ci ratio: 7.060744e-02	ci left: 2.272116e-01	ci right 2.439427e-01	k: 2355	n:10000
BCL10   10000 perm   2 sec   (6316 perm/sec)   p_kst 2.355000e-01   p_cons 5.690000e-02   p_joint 1.027000e-01

Joint ci ratio: 7.738791e-02	ci left: 1.092827e-01	ci right 1.181299e-01	k: 2273	n:20000
Cons ci ratio: 1.162417e-01	ci left: 5.066451e-02	ci right 5.696600e-02	k: 1075	n:20000
KS ci ratio: 4.994134e-02	ci left: 2.295837e-01	ci right 2.413933e-01	k: 4709	n:20000
BCL10   20000 perm   4 sec   (5605 perm/sec)   p_kst 2.354500e-01   p_cons 5.375000e-02   p_joint 1.136500e-01

Joint ci ratio: 7.504489e-02	ci left: 8.022958e-02	ci right 8.651804e-02	k: 2500	n:30000
Cons ci ratio: 9.408279e-02	ci left: 5.212081e-02	ci right 5.729919e-02	k: 1640	n:30000
KS ci ratio: 4.087545e-02	ci left: 2.298141e-01	ci right 2.394373e-01	k: 7038	n:30000
BCL10   30000 perm   6 sec   (5330 perm/sec)   p_kst 2.346000e-01   p_cons 5.466667e-02   p_joint 8.333333e-02

Outputting figure to mutsig2_images.part000000000015/BCL10.3_714_30000_0.2346_0.054667_0.083333.png
                gene_name: BCL10
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.087 

Current progress: 70 percent done.
BCL2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.940616e-01	ci left: 3.538572e-02	ci right 4.308567e-02	k: 391	n:10000
Cons ci ratio: 8.475817e-02	ci left: 1.686795e-01	ci right 1.837096e-01	k: 1761	n:10000
KS ci ratio: 2.256183e-01	ci left: 2.598777e-02	ci right 3.269015e-02	k: 292	n:10000
BCL2A1   10000 perm   2 sec   (6381 perm/sec)   p_kst 2.920000e-02   p_cons 1.761000e-01   p_joint 3.910000e-02

Joint ci ratio: 1.206295e-01	ci left: 4.711722e-02	ci right 5.321441e-02	k: 1002	n:20000
Cons ci ratio: 5.520369e-02	ci left: 1.957616e-01	ci right 2.069253e-01	k: 4026	n:20000
KS ci ratio: 1.602456e-01	ci left: 2.671804e-02	ci right 3.142021e-02	k: 580	n:20000
BCL2A1   20000 perm   4 sec   (5696 perm/sec)   p_kst 2.900000e-02   p_cons 2.013000e-01   p_joint 5.010000e-02

Joint ci ratio: 1.163885e-01	ci left: 3.430906e-02	ci right 3.858132e-02	k: 1092	n:30000
Cons ci ratio: 4.491327e-02	ci left: 1.979318e-01	ci right 2.070592e-01	k: 6074	n:30000
KS ci ratio: 1.322943e-01	ci left: 2.654940e-02	ci right 3.034265e-02	k: 852	n:30000
BCL2A1   30000 perm   5 sec   (5458 perm/sec)   p_kst 2.840000e-02   p_cons 2.024667e-01   p_joint 3.640000e-02

Joint ci ratio: 1.247226e-01	ci left: 2.259499e-02	ci right 2.562464e-02	k: 963	n:40000
Cons ci ratio: 3.889913e-02	ci left: 1.985214e-01	ci right 2.064219e-01	k: 8098	n:40000
KS ci ratio: 1.166637e-01	ci left: 2.584639e-02	ci right 2.907270e-02	k: 1097	n:40000
BCL2A1   40000 perm   8 sec   (5291 perm/sec)   p_kst 2.742500e-02   p_cons 2.024500e-01   p_joint 2.407500e-02

Joint ci ratio: 1.156536e-01	ci left: 2.115957e-02	ci right 2.377628e-02	k: 1122	n:50000
Cons ci ratio: 3.490220e-02	ci left: 1.979319e-01	ci right 2.049828e-01	k: 10072	n:50000
KS ci ratio: 1.039007e-01	ci left: 2.624000e-02	ci right 2.913518e-02	k: 1383	n:50000
BCL2A1   50000 perm   10 sec   (5146 perm/sec)   p_kst 2.766000e-02   p_cons 2.014400e-01   p_joint 2.244000e-02

Joint ci ratio: 9.600773e-02	ci left: 2.573395e-02	ci right 2.834540e-02	k: 1621	n:60000
Cons ci ratio: 3.183584e-02	ci left: 1.984954e-01	ci right 2.049335e-01	k: 12102	n:60000
KS ci ratio: 9.513716e-02	ci left: 2.620603e-02	ci right 2.883994e-02	k: 1650	n:60000
BCL2A1   60000 perm   12 sec   (4973 perm/sec)   p_kst 2.750000e-02   p_cons 2.017000e-01   p_joint 2.701667e-02

Outputting figure to mutsig2_images.part000000000015/BCL2A1.3_596_60000_0.0275_0.2017_0.027017.png
                gene_name: BCL2A1
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 71 percent done.
BCL2L11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.489076e-01	ci left: 2.118344e-02	ci right 2.729802e-02	k: 241	n:10000
Cons ci ratio: 7.911566e-02	ci left: 1.892437e-01	ci right 2.049332e-01	k: 1970	n:10000
KS ci ratio: 3.325900e-01	ci left: 1.142242e-02	ci right 1.606722e-02	k: 136	n:10000
BCL2L11   10000 perm   1 sec   (6677 perm/sec)   p_kst 1.360000e-02   p_cons 1.970000e-01   p_joint 2.410000e-02

Joint ci ratio: 1.421072e-01	ci left: 3.404014e-02	ci right 3.929568e-02	k: 732	n:20000
Cons ci ratio: 5.626410e-02	ci left: 1.897760e-01	ci right 2.008128e-01	k: 3905	n:20000
KS ci ratio: 2.317754e-01	ci left: 1.246477e-02	ci right 1.577870e-02	k: 281	n:20000
BCL2L11   20000 perm   3 sec   (5803 perm/sec)   p_kst 1.405000e-02   p_cons 1.952500e-01   p_joint 3.660000e-02

Joint ci ratio: 1.670048e-01	ci left: 1.652569e-02	ci right 1.956867e-02	k: 540	n:30000
Cons ci ratio: 4.549145e-02	ci left: 1.938669e-01	ci right 2.029249e-01	k: 5951	n:30000
KS ci ratio: 1.859295e-01	ci left: 1.324141e-02	ci right 1.598710e-02	k: 437	n:30000
BCL2L11   30000 perm   5 sec   (5458 perm/sec)   p_kst 1.456667e-02   p_cons 1.983667e-01   p_joint 1.800000e-02

Joint ci ratio: 9.470102e-02	ci left: 3.912654e-02	ci right 4.304044e-02	k: 1642	n:40000
Cons ci ratio: 3.953984e-02	ci left: 1.933352e-01	ci right 2.011588e-01	k: 7889	n:40000
KS ci ratio: 1.581589e-01	ci left: 1.392770e-02	ci right 1.634343e-02	k: 604	n:40000
BCL2L11   40000 perm   8 sec   (5249 perm/sec)   p_kst 1.510000e-02   p_cons 1.972250e-01   p_joint 4.105000e-02

Joint ci ratio: 1.346004e-01	ci left: 1.555623e-02	ci right 1.782038e-02	k: 833	n:50000
Cons ci ratio: 3.527536e-02	ci left: 1.945545e-01	ci right 2.015606e-01	k: 9902	n:50000
KS ci ratio: 1.413908e-01	ci left: 1.406860e-02	ci right 1.622823e-02	k: 756	n:50000
BCL2L11   50000 perm   10 sec   (5050 perm/sec)   p_kst 1.512000e-02   p_cons 1.980400e-01   p_joint 1.666000e-02

Joint ci ratio: 1.064941e-01	ci left: 2.090607e-02	ci right 2.327381e-02	k: 1324	n:60000
Cons ci ratio: 3.055946e-02	ci left: 2.119172e-01	ci right 2.185104e-01	k: 12912	n:60000
KS ci ratio: 1.292452e-01	ci left: 1.412325e-02	ci right 1.609073e-02	k: 905	n:60000
BCL2L11   60000 perm   12 sec   (4933 perm/sec)   p_kst 1.508333e-02   p_cons 2.152000e-01   p_joint 2.206667e-02

Joint ci ratio: 9.535893e-02	ci left: 2.244625e-02	ci right 2.470776e-02	k: 1649	n:70000
Cons ci ratio: 2.835274e-02	ci left: 2.114497e-01	ci right 2.175454e-01	k: 15014	n:70000
KS ci ratio: 1.213595e-01	ci left: 1.379376e-02	ci right 1.558966e-02	k: 1027	n:70000
BCL2L11   70000 perm   15 sec   (4775 perm/sec)   p_kst 1.467143e-02   p_cons 2.144857e-01   p_joint 2.355714e-02

Joint ci ratio: 9.520861e-02	ci left: 1.976117e-02	ci right 2.174880e-02	k: 1659	n:80000
Cons ci ratio: 2.647150e-02	ci left: 2.122817e-01	ci right 2.179890e-01	k: 17210	n:80000
KS ci ratio: 1.141572e-01	ci left: 1.369519e-02	ci right 1.536529e-02	k: 1161	n:80000
BCL2L11   80000 perm   17 sec   (4651 perm/sec)   p_kst 1.451250e-02   p_cons 2.151250e-01   p_joint 2.073750e-02

Joint ci ratio: 6.312328e-02	ci left: 3.979038e-02	ci right 4.239486e-02	k: 3697	n:90000
Cons ci ratio: 2.502872e-02	ci left: 2.114902e-01	ci right 2.168616e-01	k: 19275	n:90000
KS ci ratio: 1.062855e-01	ci left: 1.409695e-02	ci right 1.569009e-02	k: 1339	n:90000
BCL2L11   90000 perm   20 sec   (4564 perm/sec)   p_kst 1.487778e-02   p_cons 2.141667e-01   p_joint 4.107778e-02

Joint ci ratio: 6.050001e-02	ci left: 3.906974e-02	ci right 4.151702e-02	k: 4028	n:100000
Cons ci ratio: 2.373008e-02	ci left: 2.118298e-01	ci right 2.169268e-01	k: 21437	n:100000
KS ci ratio: 1.013469e-01	ci left: 1.399243e-02	ci right 1.549591e-02	k: 1473	n:100000
BCL2L11   100000 perm   22 sec   (4468 perm/sec)   p_kst 1.473000e-02   p_cons 2.143700e-01   p_joint 4.028000e-02

Joint ci ratio: 8.718657e-02	ci left: 1.725809e-02	ci right 1.884019e-02	k: 1984	n:110000
Cons ci ratio: 2.260671e-02	ci left: 2.122312e-01	ci right 2.170929e-01	k: 23612	n:110000
KS ci ratio: 9.725340e-02	ci left: 1.384622e-02	ci right 1.527045e-02	k: 1600	n:110000
BCL2L11   110000 perm   25 sec   (4393 perm/sec)   p_kst 1.454545e-02   p_cons 2.146545e-01   p_joint 1.803636e-02

Outputting figure to mutsig2_images.part000000000015/BCL2L11.3_738_110000_0.014545_0.21465_0.018036.png
                gene_name: BCL2L11
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 73 percent done.
BAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.888187e-02	ci left: 3.817174e-01	ci right 4.009460e-01	k: 3913	n:10000
Cons ci ratio: 3.582708e-02	ci left: 5.349777e-01	ci right 5.545962e-01	k: 5448	n:10000
KS ci ratio: 1.378589e-01	ci left: 6.962154e-02	ci right 8.002777e-02	k: 747	n:10000
BAG1   10000 perm   2 sec   (6426 perm/sec)   p_kst 7.470000e-02   p_cons 5.448000e-01   p_joint 3.913000e-01

Joint ci ratio: 3.562874e-02	ci left: 3.702767e-01	ci right 3.837591e-01	k: 7540	n:20000
Cons ci ratio: 2.531737e-02	ci left: 5.382176e-01	ci right 5.520692e-01	k: 10903	n:20000
KS ci ratio: 9.326961e-02	ci left: 7.735273e-02	ci right 8.496956e-02	k: 1622	n:20000
BAG1   20000 perm   4 sec   (5502 perm/sec)   p_kst 8.110000e-02   p_cons 5.451500e-01   p_joint 3.770000e-01

Outputting figure to mutsig2_images.part000000000015/BAG1.2_1066_20000_0.0811_0.54515_0.377.png
                gene_name: BAG1
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 75 percent done.
BAG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.038129e-02	ci left: 2.874598e-01	ci right 3.054589e-01	k: 2964	n:10000
Cons ci ratio: 8.000136e-02	ci left: 1.857974e-01	ci right 2.013815e-01	k: 1935	n:10000
KS ci ratio: 2.462034e-02	ci left: 7.081598e-01	ci right 7.259136e-01	k: 7171	n:10000
BAG4   10000 perm   2 sec   (6206 perm/sec)   p_kst 7.171000e-01   p_cons 1.935000e-01   p_joint 2.964000e-01

Outputting figure to mutsig2_images.part000000000015/BAG4.2_1394_10000_0.7171_0.1935_0.2964.png
                gene_name: BAG4
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 77 percent done.
BAI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.522923e-02	ci left: 8.621274e-01	ci right 8.754569e-01	k: 8689	n:10000
KS ci ratio: 5.650599e-02	ci left: 3.156236e-01	ci right 3.340785e-01	k: 3248	n:10000
BAI1   10000 perm   2 sec   (4466 perm/sec)   p_kst 3.248000e-01   p_cons 8.689000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BAI1.2_4875_10000_0.3248_0.8689_1.png
                gene_name: BAI1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
BAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.745238e-02	ci left: 8.271707e-01	ci right 8.418339e-01	k: 8346	n:10000
Cons ci ratio: 1.688045e-02	ci left: 8.363308e-01	ci right 8.506684e-01	k: 8436	n:10000
KS ci ratio: 4.183805e-02	ci left: 4.575817e-01	ci right 4.772373e-01	k: 4674	n:10000
BAP1   10000 perm   2 sec   (5572 perm/sec)   p_kst 4.674000e-01   p_cons 8.436000e-01   p_joint 8.346000e-01

Outputting figure to mutsig2_images.part000000000015/BAP1.2_2258_10000_0.4674_0.8436_0.8346.png
                gene_name: BAP1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 80 percent done.
BARX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.402065e-02	ci left: 7.181531e-01	ci right 7.357145e-01	k: 7270	n:10000
KS ci ratio: 1.097315e-02	ci left: 9.221388e-01	ci right 9.324107e-01	k: 9274	n:10000
BARX2   10000 perm   1 sec   (6760 perm/sec)   p_kst 9.274000e-01   p_cons 7.270000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BARX2.2_856_10000_0.9274_0.727_1.png
                gene_name: BARX2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
BAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.053537e-01	ci left: 1.151575e-01	ci right 1.280638e-01	k: 1215	n:10000
Cons ci ratio: 1.723172e-01	ci left: 4.494682e-02	ci right 5.351821e-02	k: 491	n:10000
KS ci ratio: 6.310950e-02	ci left: 2.695318e-01	ci right 2.871975e-01	k: 2783	n:10000
BAT3   10000 perm   2 sec   (4944 perm/sec)   p_kst 2.783000e-01   p_cons 4.910000e-02   p_joint 1.215000e-01

Joint ci ratio: 1.003390e-01	ci left: 6.733170e-02	ci right 7.449365e-02	k: 1417	n:20000
Cons ci ratio: 1.112983e-01	ci left: 5.514077e-02	ci right 6.168835e-02	k: 1167	n:20000
KS ci ratio: 4.465875e-02	ci left: 2.718482e-01	ci right 2.843163e-01	k: 5561	n:20000
BAT3   20000 perm   4 sec   (4486 perm/sec)   p_kst 2.780500e-01   p_cons 5.835000e-02   p_joint 7.085000e-02

Joint ci ratio: 8.361048e-02	ci left: 6.540533e-02	ci right 7.114529e-02	k: 2047	n:30000
Cons ci ratio: 9.093044e-02	ci left: 5.567479e-02	ci right 6.101114e-02	k: 1749	n:30000
KS ci ratio: 3.642750e-02	ci left: 2.733994e-01	ci right 2.835769e-01	k: 8354	n:30000
BAT3   30000 perm   7 sec   (4291 perm/sec)   p_kst 2.784667e-01   p_cons 5.830000e-02   p_joint 6.823333e-02

Outputting figure to mutsig2_images.part000000000015/BAT3.2_3495_30000_0.27847_0.0583_0.068233.png
                gene_name: BAT3
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.071 

Current progress: 84 percent done.
BAT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.687064e-02	ci left: 6.710580e-01	ci right 6.894369e-01	k: 6803	n:10000
Cons ci ratio: 5.302402e-02	ci left: 3.439253e-01	ci right 3.627602e-01	k: 3533	n:10000
KS ci ratio: 4.194744e-02	ci left: 4.562838e-01	ci right 4.759360e-01	k: 4661	n:10000
BAT4   10000 perm   2 sec   (6415 perm/sec)   p_kst 4.661000e-01   p_cons 3.533000e-01   p_joint 6.803000e-01

Outputting figure to mutsig2_images.part000000000015/BAT4.2_1079_10000_0.4661_0.3533_0.6803.png
                gene_name: BAT4
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 86 percent done.
BBS10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.389693e-02	ci left: 8.820651e-01	ci right 8.945077e-01	k: 8884	n:10000
KS ci ratio: 1.639181e-02	ci left: 8.440725e-01	ci right 8.581223e-01	k: 8512	n:10000
BBS10   10000 perm   2 sec   (5924 perm/sec)   p_kst 8.512000e-01   p_cons 8.884000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BBS10.2_2180_10000_0.8512_0.8884_1.png
                gene_name: BBS10
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
BCAN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.950796e-02	ci left: 2.328414e-01	ci right 2.497096e-01	k: 2412	n:10000
Cons ci ratio: 2.541083e-02	ci left: 6.950453e-01	ci right 7.130357e-01	k: 7041	n:10000
KS ci ratio: 1.588454e-01	ci left: 5.282421e-02	ci right 6.203572e-02	k: 573	n:10000
BCAN   10000 perm   2 sec   (5315 perm/sec)   p_kst 5.730000e-02   p_cons 7.041000e-01   p_joint 2.412000e-01

Joint ci ratio: 4.374250e-02	ci left: 2.801907e-01	ci right 2.927714e-01	k: 5729	n:20000
Cons ci ratio: 1.817582e-02	ci left: 6.928911e-01	ci right 7.056509e-01	k: 13986	n:20000
KS ci ratio: 1.106458e-01	ci left: 5.577376e-02	ci right 6.235516e-02	k: 1180	n:20000
BCAN   20000 perm   4 sec   (4727 perm/sec)   p_kst 5.900000e-02   p_cons 6.993000e-01   p_joint 2.864500e-01

Joint ci ratio: 3.214398e-02	ci left: 3.260733e-01	ci right 3.367594e-01	k: 9942	n:30000
Cons ci ratio: 1.471606e-02	ci left: 6.976257e-01	ci right 7.080016e-01	k: 21085	n:30000
KS ci ratio: 9.060103e-02	ci left: 5.606623e-02	ci right 6.141962e-02	k: 1761	n:30000
BCAN   30000 perm   7 sec   (4552 perm/sec)   p_kst 5.870000e-02   p_cons 7.028333e-01   p_joint 3.314000e-01

Outputting figure to mutsig2_images.part000000000015/BCAN.2_2862_30000_0.0587_0.70283_0.3314.png
                gene_name: BCAN
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 89 percent done.
BCAR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.276270e-01	ci left: 2.551545e-02	ci right 3.216281e-02	k: 287	n:10000
Cons ci ratio: 6.251794e-02	ci left: 2.732942e-01	ci right 2.910328e-01	k: 2821	n:10000
KS ci ratio: 2.589536e-01	ci left: 1.949575e-02	ci right 2.538701e-02	k: 223	n:10000
BCAR3   10000 perm   2 sec   (5829 perm/sec)   p_kst 2.230000e-02   p_cons 2.821000e-01   p_joint 2.870000e-02

Joint ci ratio: 6.496643e-02	ci left: 1.489738e-01	ci right 1.590270e-01	k: 3079	n:20000
Cons ci ratio: 4.241136e-02	ci left: 2.929081e-01	ci right 3.056503e-01	k: 5985	n:20000
KS ci ratio: 1.852381e-01	ci left: 1.986864e-02	ci right 2.397200e-02	k: 437	n:20000
BCAR3   20000 perm   4 sec   (5199 perm/sec)   p_kst 2.185000e-02   p_cons 2.992500e-01   p_joint 1.539500e-01

Joint ci ratio: 4.164114e-02	ci left: 2.232624e-01	ci right 2.327904e-01	k: 6840	n:30000
Cons ci ratio: 3.452722e-02	ci left: 2.953148e-01	ci right 3.057238e-01	k: 9015	n:30000
KS ci ratio: 1.511299e-01	ci left: 2.027360e-02	ci right 2.361987e-02	k: 657	n:30000
BCAR3   30000 perm   6 sec   (4949 perm/sec)   p_kst 2.190000e-02   p_cons 3.005000e-01   p_joint 2.280000e-01

Joint ci ratio: 3.887505e-02	ci left: 1.987199e-01	ci right 2.066233e-01	k: 8106	n:40000
Cons ci ratio: 3.004133e-02	ci left: 2.940676e-01	ci right 3.030616e-01	k: 11942	n:40000
KS ci ratio: 1.314456e-01	ci left: 2.031864e-02	ci right 2.320137e-02	k: 869	n:40000
BCAR3   40000 perm   8 sec   (4795 perm/sec)   p_kst 2.172500e-02   p_cons 2.985500e-01   p_joint 2.026500e-01

Joint ci ratio: 2.820543e-02	ci left: 2.747132e-01	ci right 2.825925e-01	k: 13932	n:50000
Cons ci ratio: 2.700221e-02	ci left: 2.924987e-01	ci right 3.005249e-01	k: 14825	n:50000
KS ci ratio: 1.180972e-01	ci left: 2.028534e-02	ci right 2.285063e-02	k: 1077	n:50000
BCAR3   50000 perm   11 sec   (4649 perm/sec)   p_kst 2.154000e-02   p_cons 2.965000e-01   p_joint 2.786400e-01

Joint ci ratio: 2.640231e-02	ci left: 2.651228e-01	ci right 2.722329e-01	k: 16120	n:60000
Cons ci ratio: 2.468721e-02	ci left: 2.922161e-01	ci right 2.995370e-01	k: 17752	n:60000
KS ci ratio: 1.075361e-01	ci left: 2.050032e-02	ci right 2.284626e-02	k: 1299	n:60000
BCAR3   60000 perm   13 sec   (4520 perm/sec)   p_kst 2.165000e-02   p_cons 2.958667e-01   p_joint 2.686667e-01

Joint ci ratio: 2.270235e-02	ci left: 2.952965e-01	ci right 3.020916e-01	k: 20908	n:70000
Cons ci ratio: 2.283073e-02	ci left: 2.929472e-01	ci right 2.997269e-01	k: 20743	n:70000
KS ci ratio: 9.938075e-02	ci left: 2.066124e-02	ci right 2.283580e-02	k: 1521	n:70000
BCAR3   70000 perm   16 sec   (4427 perm/sec)   p_kst 2.172857e-02   p_cons 2.963286e-01   p_joint 2.986857e-01

Outputting figure to mutsig2_images.part000000000015/BCAR3.2_2522_70000_0.021729_0.29633_0.29869.png
                gene_name: BCAR3
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.30 

Current progress: 91 percent done.
BCAS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.736681e-02	ci left: 3.967519e-01	ci right 4.161027e-01	k: 4064	n:10000
KS ci ratio: 4.740610e-02	ci left: 3.963535e-01	ci right 4.157013e-01	k: 4060	n:10000
BCAS2   10000 perm   1 sec   (6842 perm/sec)   p_kst 4.060000e-01   p_cons 4.064000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BCAS2.2_706_10000_0.406_0.4064_1.png
                gene_name: BCAS2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
BCAS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.850270e-02	ci left: 4.990503e-01	ci right 5.187445e-01	k: 5089	n:10000
Cons ci ratio: 6.701956e-02	ci left: 2.462819e-01	ci right 2.634612e-01	k: 2548	n:10000
KS ci ratio: 4.330361e-02	ci left: 4.405144e-01	ci right 4.601146e-01	k: 4503	n:10000
BCAS4   10000 perm   2 sec   (6601 perm/sec)   p_kst 4.503000e-01   p_cons 2.548000e-01   p_joint 5.089000e-01

Outputting figure to mutsig2_images.part000000000015/BCAS4.2_733_10000_0.4503_0.2548_0.5089.png
                gene_name: BCAS4
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 95 percent done.
BCCIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.959588e-02	ci left: 4.850534e-01	ci right 5.047496e-01	k: 4949	n:10000
KS ci ratio: 5.853744e-02	ci left: 3.004459e-01	ci right 3.186652e-01	k: 3095	n:10000
BCCIP   10000 perm   2 sec   (6366 perm/sec)   p_kst 3.095000e-01   p_cons 4.949000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BCCIP.2_1205_10000_0.3095_0.4949_1.png
                gene_name: BCCIP
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
BCL2L13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.112378e-02	ci left: 6.036732e-01	ci right 6.228608e-01	k: 6133	n:10000
KS ci ratio: 4.683115e-02	ci left: 4.022303e-01	ci right 4.216210e-01	k: 4119	n:10000
BCL2L13   10000 perm   2 sec   (6220 perm/sec)   p_kst 4.119000e-01   p_cons 6.133000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000015/BCL2L13.2_1482_10000_0.4119_0.6133_1.png
                gene_name: BCL2L13
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
BCL2L14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.650076e-03	ci left: 9.895002e-01	ci right 9.932050e-01	k: 9915	n:10000
Cons ci ratio: 3.778521e-02	ci left: 5.084526e-01	ci right 5.281367e-01	k: 5183	n:10000
KS ci ratio: 1.513557e-02	ci left: 8.635571e-01	ci right 8.768264e-01	k: 8703	n:10000
BCL2L14   10000 perm   1 sec   (6836 perm/sec)   p_kst 8.703000e-01   p_cons 5.183000e-01   p_joint 9.915000e-01

Outputting figure to mutsig2_images.part000000000015/BCL2L14.2_1089_10000_0.8703_0.5183_0.9915.png
                gene_name: BCL2L14
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000015
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 15 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1543>
Subject: Job 9893839: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1543>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000016> was used as the working directory.
Started at Fri Oct  5 23:54:32 2012
Results reported at Sat Oct  6 00:31:48 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000016.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000016.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 16  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000016.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2465.14 sec.
    Max Memory :      3672 MB
    Max Swap   :      6108 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
16
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 16
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 16: processing genes 1353 - 1442
Calculating significance of each gene.
Using projection method.
1353	BCL6	3.679871e-01
1354	BCL6B	9.029101e-01
1355	BCL7A	1.947522e-02
1356	BCL7B	5.509249e-01
1357	BCL7C	5.537293e-01
1358	BCL9	2.095876e-01
1359	BCL9L	3.637378e-02
1360	BCLAF1	2.623596e-02
1361	BCMO1	1.844133e-01
1362	BCO2	8.287003e-01
1363	BCOR	4.248597e-01
1364	BCORL1	8.873898e-01
1365	BCR	6.054399e-01
1366	BCS1L	4.660794e-01
1367	BDH1	7.927154e-01
1368	BDH2	1
1369	BDKRB1	1
1370	BDKRB2	5.799373e-01
1371	BDNF	7.086803e-01
1372	BDP1	9.913952e-01
1373	BECN1	3.548415e-01
1374	BEGAIN	7.195648e-01
1375	BEND2	2.024259e-02
1376	BEND3	7.376687e-01
1377	BEND4	8.493681e-01
1378	BEND5	4.117781e-02
1379	BEND6	3.255677e-01
In gene BEND7 the following bins exceed PROBCAP:
    COAD-AA-A00K	categ 6	N = 1486    n = 1	mu =   5.86e-07
1380	BEND7	5.713888e-02
1381	BEST1	6.223562e-01
1382	BEST2	6.694439e-01
1383	BEST3	6.474567e-01
1384	BEST4	8.345412e-01
1385	BET1	2.519759e-01
1386	BET1L	1
1387	BEX1	3.752930e-01
1388	BEX2	1
1389	BEX4	1
1390	BEX5	3.888294e-02
1391	BFAR	7.956194e-01
1392	BFSP1	7.948636e-01
1393	BFSP2	4.640245e-01
1394	BGLAP	9.469815e-02
1395	BGN	7.390511e-01
1396	BHLHB9	1
1397	BHLHE22	1
1398	BHLHE40	1
1399	BHLHE41	5.688364e-01
1400	BHMT	1.746579e-01
1401	BHMT2	8.955377e-03
1402	BICC1	3.511059e-01
1403	BICD1	2.691172e-01
1404	BICD2	6.066055e-01
1405	BID	5.703370e-01
1406	BIK	2.759559e-01
1407	BIN1	6.437542e-01
1408	BIN2	6.170209e-01
1409	BIN3	6.000595e-01
1410	BIRC2	1.976726e-01
1411	BIRC3	3.461881e-01
1412	BIRC5	1
1413	BIRC6	9.901906e-01
1414	BIRC7	1
1415	BIRC8	6.910278e-01
1416	BIVM	1
1417	BLCAP	3.028073e-01
1418	BLID	1.260652e-02
1419	BLK	5.685796e-01
1420	BLM	2.974256e-01
1421	BLMH	3.487379e-01
1422	BLNK	8.641688e-01
1423	BLOC1S1	4.281124e-01
1424	BLOC1S2	5.649394e-01
1425	BLOC1S3	1
1426	BLVRA	4.616507e-01
1427	BLVRB	1.137731e-01
1428	BLZF1	1.802201e-01
1429	BMF	5.599377e-01
1430	BMI1	1.153492e-01
1431	BMP1	7.836982e-01
1432	BMP10	1.925752e-01
1433	BMP15	2.592018e-02
1434	BMP2	9.300710e-01
1435	BMP2K	7.651573e-01
1436	BMP3	2.640378e-01
1437	BMP4	5.245003e-01
In gene BMP5 the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 1392    n = 1	mu =   1.72e-07
1438	BMP5	2.653217e-02
1439	BMP6	3.167733e-01
1440	BMP7	1.874932e-01
1441	BMP8A	7.380606e-01
1442	BMP8B	1
Done

Running MutSig 2:
Scatter job 16: processing genes 1353 - 1442
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
BIRC6
Processing conservation and coverage...
67% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.926339e-02	ci left: 7.976037e-01	ci right 8.132180e-01	k: 8055	n:10000
Cons ci ratio: 5.227834e-02	ci left: 3.503853e-01	ci right 3.692964e-01	k: 3598	n:10000
KS ci ratio: 1.399478e-02	ci left: 8.806319e-01	ci right 8.931418e-01	k: 8870	n:10000
BIRC6   10000 perm   5 sec   (1833 perm/sec)   p_kst 8.870000e-01   p_cons 3.598000e-01   p_joint 8.055000e-01

Outputting figure to mutsig2_images.part000000000016/BIRC6.26_14870_10000_0.887_0.3598_0.8055.png
                gene_name: BIRC6
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 2 percent done.
BCL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.645966e-02	ci left: 2.494459e-01	ci right 2.666952e-01	k: 2580	n:10000
Cons ci ratio: 7.419256e-03	ci left: 9.617346e-01	ci right 9.689910e-01	k: 9655	n:10000
KS ci ratio: 9.397593e-02	ci left: 1.411914e-01	ci right 1.552142e-01	k: 1481	n:10000
BCL9   10000 perm   3 sec   (3723 perm/sec)   p_kst 1.481000e-01   p_cons 9.655000e-01   p_joint 2.580000e-01

Outputting figure to mutsig2_images.part000000000016/BCL9.12_4309_10000_0.1481_0.9655_0.258.png
                gene_name: BCL9
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 4 percent done.
BCL9L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.751436e-01	ci left: 4.350916e-02	ci right 5.195681e-02	k: 476	n:10000
Cons ci ratio: 3.947729e-02	ci left: 4.865527e-01	ci right 5.062494e-01	k: 4964	n:10000
KS ci ratio: 2.399155e-01	ci left: 2.287554e-02	ci right 2.920465e-02	k: 259	n:10000
BCL9L   10000 perm   3 sec   (3644 perm/sec)   p_kst 2.590000e-02   p_cons 4.964000e-01   p_joint 4.760000e-02

Joint ci ratio: 1.243277e-01	ci left: 4.439900e-02	ci right 5.033349e-02	k: 946	n:20000
Cons ci ratio: 2.814664e-02	ci left: 4.853478e-01	ci right 4.992544e-01	k: 9846	n:20000
KS ci ratio: 1.649854e-01	ci left: 2.518148e-02	ci right 2.975729e-02	k: 548	n:20000
BCL9L   20000 perm   6 sec   (3411 perm/sec)   p_kst 2.740000e-02   p_cons 4.923000e-01   p_joint 4.730000e-02

Joint ci ratio: 8.669482e-02	ci left: 6.102746e-02	ci right 6.659071e-02	k: 1913	n:30000
Cons ci ratio: 2.295006e-02	ci left: 4.873269e-01	ci right 4.986745e-01	k: 14790	n:30000
KS ci ratio: 1.339189e-01	ci left: 2.590436e-02	ci right 2.965451e-02	k: 832	n:30000
BCL9L   30000 perm   9 sec   (3294 perm/sec)   p_kst 2.773333e-02   p_cons 4.930000e-01   p_joint 6.376667e-02

Joint ci ratio: 8.620758e-02	ci left: 4.702727e-02	ci right 5.128849e-02	k: 1965	n:40000
Cons ci ratio: 1.949957e-02	ci left: 4.976376e-01	ci right 5.074620e-01	k: 20102	n:40000
KS ci ratio: 1.154795e-01	ci left: 2.638084e-02	ci right 2.963817e-02	k: 1119	n:40000
BCL9L   40000 perm   12 sec   (3212 perm/sec)   p_kst 2.797500e-02   p_cons 5.025500e-01   p_joint 4.912500e-02

Joint ci ratio: 6.499326e-02	ci left: 6.561154e-02	ci right 7.003880e-02	k: 3390	n:50000
Cons ci ratio: 1.747215e-02	ci left: 4.972674e-01	ci right 5.060524e-01	k: 25083	n:50000
KS ci ratio: 1.042109e-01	ci left: 2.608406e-02	ci right 2.897115e-02	k: 1375	n:50000
BCL9L   50000 perm   16 sec   (3151 perm/sec)   p_kst 2.750000e-02   p_cons 5.016600e-01   p_joint 6.780000e-02

Joint ci ratio: 6.701447e-02	ci left: 5.213918e-02	ci right 5.577079e-02	k: 3236	n:60000
Cons ci ratio: 1.596564e-02	ci left: 4.971576e-01	ci right 5.051756e-01	k: 30070	n:60000
KS ci ratio: 9.490100e-02	ci left: 2.633628e-02	ci right 2.897634e-02	k: 1658	n:60000
BCL9L   60000 perm   19 sec   (3091 perm/sec)   p_kst 2.763333e-02   p_cons 5.011667e-01   p_joint 5.393333e-02

Outputting figure to mutsig2_images.part000000000016/BCL9L.11_4532_60000_0.027633_0.50117_0.053933.png
                gene_name: BCL9L
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 6 percent done.
BCLAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.239972e-02	ci left: 9.032959e-01	ci right 9.146645e-01	k: 9091	n:10000
KS ci ratio: 1.560120e-02	ci left: 8.564111e-01	ci right 8.699766e-01	k: 8633	n:10000
BCLAF1   10000 perm   2 sec   (4628 perm/sec)   p_kst 8.633000e-01   p_cons 9.091000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BCLAF1.11_2807_10000_0.8633_0.9091_1.png
                gene_name: BCLAF1
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
BCOR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.305635e-02	ci left: 1.436425e-01	ci right 1.577616e-01	k: 1506	n:10000
Cons ci ratio: 2.248291e-01	ci left: 2.617677e-02	ci right 3.290101e-02	k: 294	n:10000
KS ci ratio: 2.655618e-02	ci left: 6.761958e-01	ci right 6.944962e-01	k: 6854	n:10000
BCOR   10000 perm   3 sec   (3381 perm/sec)   p_kst 6.854000e-01   p_cons 2.940000e-02   p_joint 1.506000e-01

Joint ci ratio: 6.202810e-02	ci left: 1.612621e-01	ci right 1.716351e-01	k: 3328	n:20000
Cons ci ratio: 1.624178e-01	ci left: 2.599753e-02	ci right 3.064096e-02	k: 565	n:20000
KS ci ratio: 1.781353e-02	ci left: 7.013418e-01	ci right 7.139978e-01	k: 14154	n:20000
BCOR   20000 perm   7 sec   (2994 perm/sec)   p_kst 7.077000e-01   p_cons 2.825000e-02   p_joint 1.664000e-01

Joint ci ratio: 5.219967e-02	ci left: 1.540871e-01	ci right 1.623792e-01	k: 4746	n:30000
Cons ci ratio: 1.357744e-01	ci left: 2.519514e-02	ci right 2.889722e-02	k: 810	n:30000
KS ci ratio: 1.487710e-02	ci left: 6.930369e-01	ci right 7.034580e-01	k: 20948	n:30000
BCOR   30000 perm   10 sec   (2937 perm/sec)   p_kst 6.982667e-01   p_cons 2.700000e-02   p_joint 1.582000e-01

Joint ci ratio: 4.589454e-02	ci left: 1.506983e-01	ci right 1.578019e-01	k: 6169	n:40000
Cons ci ratio: 1.173246e-01	ci left: 2.555494e-02	ci right 2.876420e-02	k: 1085	n:40000
KS ci ratio: 1.282875e-02	ci left: 6.955576e-01	ci right 7.045634e-01	k: 28003	n:40000
BCOR   40000 perm   14 sec   (2879 perm/sec)   p_kst 7.000750e-01   p_cons 2.712500e-02   p_joint 1.542250e-01

Joint ci ratio: 4.393218e-02	ci left: 1.343341e-01	ci right 1.403881e-01	k: 6867	n:50000
Cons ci ratio: 1.064183e-01	ci left: 2.501229e-02	ci right 2.784305e-02	k: 1320	n:50000
KS ci ratio: 1.143713e-02	ci left: 6.974072e-01	ci right 7.054494e-01	k: 35072	n:50000
BCOR   50000 perm   18 sec   (2813 perm/sec)   p_kst 7.014400e-01   p_cons 2.640000e-02   p_joint 1.373400e-01

Joint ci ratio: 4.069191e-02	ci left: 1.312176e-01	ci right 1.366845e-01	k: 8036	n:60000
Cons ci ratio: 9.665272e-02	ci left: 2.539216e-02	ci right 2.798722e-02	k: 1600	n:60000
KS ci ratio: 1.042544e-02	ci left: 6.983724e-01	ci right 7.057080e-01	k: 42123	n:60000
BCOR   60000 perm   22 sec   (2770 perm/sec)   p_kst 7.020500e-01   p_cons 2.666667e-02   p_joint 1.339333e-01

Outputting figure to mutsig2_images.part000000000016/BCOR.9_5324_60000_0.70205_0.026667_0.13393.png
                gene_name: BCOR
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 9 percent done.
BDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.400106e-02	ci left: 3.356792e-01	ci right 3.544111e-01	k: 3450	n:10000
Cons ci ratio: 2.446268e-02	ci left: 7.107838e-01	ci right 7.284881e-01	k: 7197	n:10000
KS ci ratio: 8.290783e-02	ci left: 1.750712e-01	ci right 1.903141e-01	k: 1826	n:10000
BDP1   10000 perm   3 sec   (3001 perm/sec)   p_kst 1.826000e-01   p_cons 7.197000e-01   p_joint 3.450000e-01

Outputting figure to mutsig2_images.part000000000016/BDP1.9_8031_10000_0.1826_0.7197_0.345.png
                gene_name: BDP1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 11 percent done.
BEND2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.786555e-03	ci left: 9.366165e-01	ci right 9.459244e-01	k: 9414	n:10000
Cons ci ratio: 2.149762e-03	ci left: 9.958378e-01	ci right 9.980570e-01	k: 9971	n:10000
KS ci ratio: 2.762719e-02	ci left: 6.587727e-01	ci right 6.773293e-01	k: 6681	n:10000
BEND2   10000 perm   2 sec   (4098 perm/sec)   p_kst 6.681000e-01   p_cons 9.971000e-01   p_joint 9.414000e-01

Outputting figure to mutsig2_images.part000000000016/BEND2.9_2482_10000_0.6681_0.9971_0.9414.png
                gene_name: BEND2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 13 percent done.
BLM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.972249e-01	ci left: 3.424249e-02	ci right 4.182967e-02	k: 379	n:10000
Cons ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
KS ci ratio: 9.588261e-02	ci left: 1.362914e-01	ci right 1.501172e-01	k: 1431	n:10000
BLM   10000 perm   2 sec   (4500 perm/sec)   p_kst 1.431000e-01   p_cons 8.600000e-03   p_joint 3.790000e-02

Joint ci ratio: 1.932871e-01	ci left: 1.819999e-02	ci right 2.214125e-02	k: 402	n:20000
Cons ci ratio: 2.941709e-01	ci left: 7.506100e-03	ci right 1.013969e-02	k: 175	n:20000
KS ci ratio: 6.791111e-02	ci left: 1.379290e-01	ci right 1.476751e-01	k: 2855	n:20000
BLM   20000 perm   5 sec   (4027 perm/sec)   p_kst 1.427500e-01   p_cons 8.750000e-03   p_joint 2.010000e-02

Joint ci ratio: 1.311903e-01	ci left: 2.700110e-02	ci right 3.082419e-02	k: 866	n:30000
Cons ci ratio: 2.366011e-01	ci left: 7.993789e-03	ci right 1.016955e-02	k: 271	n:30000
KS ci ratio: 5.639746e-02	ci left: 1.347744e-01	ci right 1.426291e-01	k: 4160	n:30000
BLM   30000 perm   8 sec   (3801 perm/sec)   p_kst 1.386667e-01   p_cons 9.033333e-03   p_joint 2.886667e-02

Joint ci ratio: 8.704904e-02	ci left: 4.614583e-02	ci right 5.037006e-02	k: 1929	n:40000
Cons ci ratio: 2.119985e-01	ci left: 7.576304e-03	ci right 9.396133e-03	k: 338	n:40000
KS ci ratio: 4.895966e-02	ci left: 1.347329e-01	ci right 1.415198e-01	k: 5524	n:40000
BLM   40000 perm   11 sec   (3644 perm/sec)   p_kst 1.381000e-01   p_cons 8.450000e-03   p_joint 4.822500e-02

Joint ci ratio: 7.708184e-02	ci left: 4.728116e-02	ci right 5.109140e-02	k: 2458	n:50000
Cons ci ratio: 1.703446e-01	ci left: 9.586755e-03	ci right 1.139076e-02	k: 523	n:50000
KS ci ratio: 4.376244e-02	ci left: 1.352455e-01	ci right 1.413165e-01	k: 6913	n:50000
BLM   50000 perm   14 sec   (3587 perm/sec)   p_kst 1.382600e-01   p_cons 1.046000e-02   p_joint 4.916000e-02

Joint ci ratio: 7.514752e-02	ci left: 4.175070e-02	ci right 4.502699e-02	k: 2602	n:60000
Cons ci ratio: 1.733548e-01	ci left: 7.717154e-03	ci right 9.197648e-03	k: 506	n:60000
KS ci ratio: 3.933219e-02	ci left: 1.392326e-01	ci right 1.448354e-01	k: 8521	n:60000
BLM   60000 perm   17 sec   (3518 perm/sec)   p_kst 1.420167e-01   p_cons 8.433333e-03   p_joint 4.336667e-02

Joint ci ratio: 7.944151e-02	ci left: 3.227732e-02	ci right 3.496152e-02	k: 2352	n:70000
Cons ci ratio: 1.608387e-01	ci left: 7.737203e-03	ci right 9.104016e-03	k: 588	n:70000
KS ci ratio: 3.638968e-02	ci left: 1.396063e-01	ci right 1.447948e-01	k: 9953	n:70000
BLM   70000 perm   20 sec   (3417 perm/sec)   p_kst 1.421857e-01   p_cons 8.400000e-03   p_joint 3.360000e-02

Joint ci ratio: 7.918174e-02	ci left: 2.854674e-02	ci right 3.091252e-02	k: 2377	n:80000
Cons ci ratio: 1.504670e-01	ci left: 7.779200e-03	ci right 9.056834e-03	k: 672	n:80000
KS ci ratio: 3.407962e-02	ci left: 1.394887e-01	ci right 1.443373e-01	k: 11352	n:80000
BLM   80000 perm   24 sec   (3335 perm/sec)   p_kst 1.419000e-01   p_cons 8.400000e-03   p_joint 2.971250e-02

Joint ci ratio: 7.353126e-02	ci left: 2.948437e-02	ci right 3.174602e-02	k: 2754	n:90000
Cons ci ratio: 1.418736e-01	ci left: 7.814073e-03	ci right 9.017934e-03	k: 756	n:90000
KS ci ratio: 3.214690e-02	ci left: 1.395049e-01	ci right 1.440738e-01	k: 12760	n:90000
BLM   90000 perm   27 sec   (3292 perm/sec)   p_kst 1.417778e-01   p_cons 8.400000e-03   p_joint 3.060000e-02

Joint ci ratio: 7.084080e-02	ci left: 2.865650e-02	ci right 3.077089e-02	k: 2970	n:100000
Cons ci ratio: 1.338816e-01	ci left: 7.930635e-03	ci right 9.078147e-03	k: 849	n:100000
KS ci ratio: 3.050212e-02	ci left: 1.395837e-01	ci right 1.439171e-01	k: 14174	n:100000
BLM   100000 perm   31 sec   (3230 perm/sec)   p_kst 1.417400e-01   p_cons 8.490000e-03   p_joint 2.970000e-02

Joint ci ratio: 6.845726e-02	ci left: 2.795365e-02	ci right 2.994401e-02	k: 3183	n:110000
Cons ci ratio: 1.273083e-01	ci left: 8.001148e-03	ci right 9.097728e-03	k: 939	n:110000
KS ci ratio: 2.903546e-02	ci left: 1.400777e-01	ci right 1.442139e-01	k: 15635	n:110000
BLM   110000 perm   34 sec   (3196 perm/sec)   p_kst 1.421364e-01   p_cons 8.536364e-03   p_joint 2.893636e-02

Joint ci ratio: 7.317124e-02	ci left: 2.250295e-02	ci right 2.422019e-02	k: 2802	n:120000
Cons ci ratio: 1.209670e-01	ci left: 8.149963e-03	ci right 9.207320e-03	k: 1040	n:120000
KS ci ratio: 2.785023e-02	ci left: 1.397231e-01	ci right 1.436776e-01	k: 17003	n:120000
BLM   120000 perm   38 sec   (3159 perm/sec)   p_kst 1.416917e-01   p_cons 8.666667e-03   p_joint 2.335000e-02

Joint ci ratio: 6.075353e-02	ci left: 3.008722e-02	ci right 3.197993e-02	k: 4033	n:130000
Cons ci ratio: 1.147799e-01	ci left: 8.381644e-03	ci right 9.409672e-03	k: 1155	n:130000
KS ci ratio: 2.670110e-02	ci left: 1.403133e-01	ci right 1.441181e-01	k: 18487	n:130000
BLM   130000 perm   42 sec   (3125 perm/sec)   p_kst 1.422077e-01   p_cons 8.884615e-03   p_joint 3.102308e-02

Joint ci ratio: 5.900285e-02	ci left: 2.966173e-02	ci right 3.147207e-02	k: 4278	n:140000
Cons ci ratio: 1.104224e-01	ci left: 8.428546e-03	ci right 9.420525e-03	k: 1248	n:140000
KS ci ratio: 2.576541e-02	ci left: 1.400476e-01	ci right 1.437101e-01	k: 19862	n:140000
BLM   140000 perm   45 sec   (3084 perm/sec)   p_kst 1.418714e-01   p_cons 8.914286e-03   p_joint 3.055714e-02

Joint ci ratio: 6.320790e-02	ci left: 2.420921e-02	ci right 2.579589e-02	k: 3749	n:150000
Cons ci ratio: 1.060489e-01	ci left: 8.547724e-03	ci right 9.511398e-03	k: 1353	n:150000
KS ci ratio: 2.487322e-02	ci left: 1.402902e-01	ci right 1.438303e-01	k: 21308	n:150000
BLM   150000 perm   49 sec   (3037 perm/sec)   p_kst 1.420533e-01   p_cons 9.020000e-03   p_joint 2.499333e-02

Joint ci ratio: 6.293279e-02	ci left: 2.292941e-02	ci right 2.442542e-02	k: 3787	n:160000
Cons ci ratio: 1.025121e-01	ci left: 8.591766e-03	ci right 9.526154e-03	k: 1448	n:160000
KS ci ratio: 2.405663e-02	ci left: 1.406164e-01	ci right 1.440466e-01	k: 22772	n:160000
BLM   160000 perm   53 sec   (3000 perm/sec)   p_kst 1.423250e-01   p_cons 9.050000e-03   p_joint 2.366875e-02

Joint ci ratio: 6.256503e-02	ci left: 2.186395e-02	ci right 2.328181e-02	k: 3836	n:170000
Cons ci ratio: 9.914514e-02	ci left: 8.659786e-03	ci right 9.568838e-03	k: 1548	n:170000
KS ci ratio: 2.331383e-02	ci left: 1.409234e-01	ci right 1.442535e-01	k: 24239	n:170000
BLM   170000 perm   57 sec   (2963 perm/sec)   p_kst 1.425824e-01   p_cons 9.105882e-03   p_joint 2.256471e-02

Outputting figure to mutsig2_images.part000000000016/BLM.9_4338_170000_0.14258_0.0091059_0.022565.png
                gene_name: BLM
               theta_stop: 0.099 
                    nperm: 170000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.0091 
      ci_cons_bounds_left: 0.0087 
     ci_cons_bounds_right: 0.0096 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 15 percent done.
BCR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.960612e-01	ci left: 7.782754e-03	ci right 1.171078e-02	k: 96	n:10000
Cons ci ratio: 5.685557e-02	ci left: 3.129444e-01	ci right 3.313594e-01	k: 3221	n:10000
KS ci ratio: 4.284655e-01	ci left: 6.526864e-03	ci right 1.016828e-02	k: 82	n:10000
BCR   10000 perm   2 sec   (4395 perm/sec)   p_kst 8.200000e-03   p_cons 3.221000e-01   p_joint 9.600000e-03

Joint ci ratio: 1.378673e-01	ci left: 3.616580e-02	ci right 4.156932e-02	k: 776	n:20000
Cons ci ratio: 3.935337e-02	ci left: 3.250254e-01	ci right 3.381236e-01	k: 6631	n:20000
KS ci ratio: 3.177907e-01	ci left: 6.351314e-03	ci right 8.795126e-03	k: 150	n:20000
BCR   20000 perm   5 sec   (3962 perm/sec)   p_kst 7.500000e-03   p_cons 3.315500e-01   p_joint 3.880000e-02

Joint ci ratio: 1.376166e-01	ci left: 2.451849e-02	ci right 2.817402e-02	k: 789	n:30000
Cons ci ratio: 3.198987e-02	ci left: 3.281978e-01	ci right 3.389011e-01	k: 10006	n:30000
KS ci ratio: 2.591891e-01	ci left: 6.586143e-03	ci right 8.577669e-03	k: 226	n:30000
BCR   30000 perm   8 sec   (3716 perm/sec)   p_kst 7.533333e-03   p_cons 3.335333e-01   p_joint 2.630000e-02

Joint ci ratio: 1.415959e-01	ci left: 1.746740e-02	ci right 2.015311e-02	k: 751	n:40000
Cons ci ratio: 2.780978e-02	ci left: 3.272353e-01	ci right 3.364891e-01	k: 13274	n:40000
KS ci ratio: 2.239687e-01	ci left: 6.748716e-03	ci right 8.473923e-03	k: 303	n:40000
BCR   40000 perm   11 sec   (3621 perm/sec)   p_kst 7.575000e-03   p_cons 3.318500e-01   p_joint 1.877500e-02

Joint ci ratio: 1.407316e-01	ci left: 1.420373e-02	ci right 1.637308e-02	k: 763	n:50000
Cons ci ratio: 2.486682e-02	ci left: 3.278521e-01	ci right 3.361274e-01	k: 16599	n:50000
KS ci ratio: 2.027578e-01	ci left: 6.667492e-03	ci right 8.190535e-03	k: 370	n:50000
BCR   50000 perm   14 sec   (3554 perm/sec)   p_kst 7.400000e-03   p_cons 3.319800e-01   p_joint 1.526000e-02

Joint ci ratio: 1.368008e-01	ci left: 1.257576e-02	ci right 1.443841e-02	k: 809	n:60000
Cons ci ratio: 2.273179e-02	ci left: 3.276002e-01	ci right 3.351494e-01	k: 19882	n:60000
KS ci ratio: 1.816699e-01	ci left: 7.000225e-03	ci right 8.414684e-03	k: 461	n:60000
BCR   60000 perm   17 sec   (3490 perm/sec)   p_kst 7.683333e-03   p_cons 3.313667e-01   p_joint 1.348333e-02

Joint ci ratio: 1.566038e-01	ci left: 8.176331e-03	ci right 9.579120e-03	k: 620	n:70000
Cons ci ratio: 2.103188e-02	ci left: 3.281693e-01	ci right 3.351589e-01	k: 23216	n:70000
KS ci ratio: 1.694659e-01	ci left: 6.942612e-03	ci right 8.241563e-03	k: 530	n:70000
BCR   70000 perm   21 sec   (3395 perm/sec)   p_kst 7.571429e-03   p_cons 3.316571e-01   p_joint 8.857143e-03

Joint ci ratio: 1.483692e-01	ci left: 8.007889e-03	ci right 9.303121e-03	k: 691	n:80000
Cons ci ratio: 1.965839e-02	ci left: 3.287366e-01	ci right 3.352756e-01	k: 26560	n:80000
KS ci ratio: 1.599692e-01	ci left: 6.853786e-03	ci right 8.057348e-03	k: 595	n:80000
BCR   80000 perm   24 sec   (3337 perm/sec)   p_kst 7.437500e-03   p_cons 3.320000e-01   p_joint 8.637500e-03

Joint ci ratio: 1.424440e-01	ci left: 7.749759e-03	ci right 8.948920e-03	k: 750	n:90000
Cons ci ratio: 1.854299e-02	ci left: 3.287126e-01	ci right 3.348760e-01	k: 29861	n:90000
KS ci ratio: 1.479037e-01	ci left: 7.171388e-03	ci right 8.327346e-03	k: 696	n:90000
BCR   90000 perm   27 sec   (3291 perm/sec)   p_kst 7.733333e-03   p_cons 3.317889e-01   p_joint 8.333333e-03

Joint ci ratio: 1.196474e-01	ci left: 9.984202e-03	ci right 1.126442e-02	k: 1061	n:100000
Cons ci ratio: 1.756646e-02	ci left: 3.295002e-01	ci right 3.353496e-01	k: 33242	n:100000
KS ci ratio: 1.398094e-01	ci left: 7.254412e-03	ci right 8.354425e-03	k: 779	n:100000
BCR   100000 perm   31 sec   (3235 perm/sec)   p_kst 7.790000e-03   p_cons 3.324200e-01   p_joint 1.061000e-02

Joint ci ratio: 1.138432e-01	ci left: 1.005620e-02	ci right 1.127890e-02	k: 1172	n:110000
Cons ci ratio: 1.674427e-02	ci left: 3.297612e-01	ci right 3.353385e-01	k: 36580	n:110000
KS ci ratio: 1.325269e-01	ci left: 7.367708e-03	ci right 8.422123e-03	k: 867	n:110000
BCR   110000 perm   35 sec   (3173 perm/sec)   p_kst 7.881818e-03   p_cons 3.325455e-01   p_joint 1.065455e-02

Joint ci ratio: 1.191896e-01	ci left: 8.400601e-03	ci right 9.473333e-03	k: 1071	n:120000
Cons ci ratio: 1.606565e-02	ci left: 3.289362e-01	ci right 3.342719e-01	k: 39792	n:120000
KS ci ratio: 1.268113e-01	ci left: 7.398786e-03	ci right 8.408547e-03	k: 947	n:120000
BCR   120000 perm   38 sec   (3131 perm/sec)   p_kst 7.891667e-03   p_cons 3.316000e-01   p_joint 8.925000e-03

Joint ci ratio: 1.185636e-01	ci left: 7.843829e-03	ci right 8.839828e-03	k: 1083	n:130000
Cons ci ratio: 1.542763e-02	ci left: 3.292634e-01	ci right 3.343903e-01	k: 43137	n:130000
KS ci ratio: 1.228655e-01	ci left: 7.291654e-03	ci right 8.253575e-03	k: 1009	n:130000
BCR   130000 perm   42 sec   (3086 perm/sec)   p_kst 7.761538e-03   p_cons 3.318231e-01   p_joint 8.330769e-03

Joint ci ratio: 1.151688e-01	ci left: 7.734244e-03	ci right 8.686294e-03	k: 1148	n:140000
Cons ci ratio: 1.487753e-02	ci left: 3.290269e-01	ci right 3.339658e-01	k: 46409	n:140000
KS ci ratio: 1.185442e-01	ci left: 7.290362e-03	ci right 8.215915e-03	k: 1084	n:140000
BCR   140000 perm   46 sec   (3049 perm/sec)   p_kst 7.742857e-03   p_cons 3.314929e-01   p_joint 8.200000e-03

Joint ci ratio: 1.128490e-01	ci left: 7.529457e-03	ci right 8.436383e-03	k: 1196	n:150000
Cons ci ratio: 1.435859e-02	ci left: 3.295568e-01	ci right 3.343297e-01	k: 49791	n:150000
KS ci ratio: 1.149991e-01	ci left: 7.244421e-03	ci right 8.134768e-03	k: 1152	n:150000
BCR   150000 perm   50 sec   (3016 perm/sec)   p_kst 7.680000e-03   p_cons 3.319400e-01   p_joint 7.973333e-03

Joint ci ratio: 1.107980e-01	ci left: 7.332207e-03	ci right 8.198273e-03	k: 1241	n:160000
Cons ci ratio: 1.391921e-02	ci left: 3.291060e-01	ci right 3.337252e-01	k: 53026	n:160000
KS ci ratio: 1.113870e-01	ci left: 7.253199e-03	ci right 8.114785e-03	k: 1228	n:160000
BCR   160000 perm   54 sec   (2980 perm/sec)   p_kst 7.675000e-03   p_cons 3.314125e-01   p_joint 7.756250e-03

Joint ci ratio: 1.010042e-01	ci left: 8.338549e-03	ci right 9.231265e-03	k: 1492	n:170000
Cons ci ratio: 1.350670e-02	ci left: 3.290743e-01	ci right 3.335550e-01	k: 56323	n:170000
KS ci ratio: 1.053245e-01	ci left: 7.656461e-03	ci right 8.513384e-03	k: 1373	n:170000
BCR   170000 perm   58 sec   (2943 perm/sec)   p_kst 8.076471e-03   p_cons 3.313118e-01   p_joint 8.776471e-03

Joint ci ratio: 9.868962e-02	ci left: 8.259874e-03	ci right 9.122728e-03	k: 1563	n:180000
Cons ci ratio: 1.312190e-02	ci left: 3.292809e-01	ci right 3.336357e-01	k: 59662	n:180000
KS ci ratio: 1.019629e-01	ci left: 7.728979e-03	ci right 8.564756e-03	k: 1465	n:180000
BCR   180000 perm   62 sec   (2910 perm/sec)   p_kst 8.138889e-03   p_cons 3.314556e-01   p_joint 8.683333e-03

Joint ci ratio: 1.025148e-01	ci left: 7.245169e-03	ci right 8.033122e-03	k: 1450	n:190000
Cons ci ratio: 1.278082e-02	ci left: 3.290312e-01	ci right 3.332687e-01	k: 62918	n:190000
KS ci ratio: 9.984508e-02	ci left: 7.645385e-03	ci right 8.453943e-03	k: 1528	n:190000
BCR   190000 perm   66 sec   (2877 perm/sec)   p_kst 8.042105e-03   p_cons 3.311474e-01   p_joint 7.631579e-03

Joint ci ratio: 1.018300e-01	ci left: 6.980307e-03	ci right 7.734078e-03	k: 1470	n:200000
Cons ci ratio: 1.245587e-02	ci left: 3.291323e-01	ci right 3.332626e-01	k: 66239	n:200000
KS ci ratio: 9.730092e-02	ci left: 7.658134e-03	ci right 8.446225e-03	k: 1609	n:200000
BCR   200000 perm   70 sec   (2844 perm/sec)   p_kst 8.045000e-03   p_cons 3.311950e-01   p_joint 7.350000e-03

Joint ci ratio: 1.027308e-01	ci left: 6.531831e-03	ci right 7.243787e-03	k: 1445	n:210000
Cons ci ratio: 1.215163e-02	ci left: 3.293297e-01	ci right 3.333607e-01	k: 69582	n:210000
KS ci ratio: 9.488528e-02	ci left: 7.679204e-03	ci right 8.448753e-03	k: 1692	n:210000
BCR   210000 perm   75 sec   (2814 perm/sec)   p_kst 8.057143e-03   p_cons 3.313429e-01   p_joint 6.880952e-03

Joint ci ratio: 1.069603e-01	ci left: 5.743484e-03	ci right 6.396906e-03	k: 1334	n:220000
Cons ci ratio: 1.186792e-02	ci left: 3.295374e-01	ci right 3.334761e-01	k: 72931	n:220000
KS ci ratio: 9.290511e-02	ci left: 7.654171e-03	ci right 8.404333e-03	k: 1765	n:220000
BCR   220000 perm   79 sec   (2782 perm/sec)   p_kst 8.022727e-03   p_cons 3.315045e-01   p_joint 6.063636e-03

Joint ci ratio: 1.049001e-01	ci left: 5.718092e-03	ci right 6.355322e-03	k: 1387	n:230000
Cons ci ratio: 1.160650e-02	ci left: 3.296021e-01	ci right 3.334543e-01	k: 76251	n:230000
KS ci ratio: 9.109389e-02	ci left: 7.622968e-03	ci right 8.354730e-03	k: 1836	n:230000
BCR   230000 perm   84 sec   (2750 perm/sec)   p_kst 7.982609e-03   p_cons 3.315261e-01   p_joint 6.030435e-03

Joint ci ratio: 8.717788e-02	ci left: 7.989810e-03	ci right 8.722137e-03	k: 2004	n:240000
Cons ci ratio: 1.157822e-02	ci left: 3.213580e-01	ci right 3.251046e-01	k: 77575	n:240000
KS ci ratio: 8.886960e-02	ci left: 7.684136e-03	ci right 8.402822e-03	k: 1929	n:240000
BCR   240000 perm   88 sec   (2721 perm/sec)   p_kst 8.037500e-03   p_cons 3.232292e-01   p_joint 8.350000e-03

Outputting figure to mutsig2_images.part000000000016/BCR.7_3908_240000_0.0080375_0.32323_0.00835.png
                gene_name: BCR
               theta_stop: 0.089 
                    nperm: 240000 
                     p_ks: 0.0080 
        ci_ks_bounds_left: 0.0077 
       ci_ks_bounds_right: 0.0084 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.0083 
     ci_joint_bounds_left: 0.0080 
    ci_joint_bounds_right: 0.0087 

Current progress: 17 percent done.
BIRC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.122226e-02	ci left: 6.021669e-01	ci right 6.213680e-01	k: 6118	n:10000
KS ci ratio: 1.928182e-02	ci left: 7.972992e-01	ci right 8.129226e-01	k: 8052	n:10000
BIRC3   10000 perm   2 sec   (4942 perm/sec)   p_kst 8.052000e-01   p_cons 6.118000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BIRC3.7_1847_10000_0.8052_0.6118_1.png
                gene_name: BIRC3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
BCL7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.459607e-02	ci left: 7.085635e-01	ci right 7.263097e-01	k: 7175	n:10000
Cons ci ratio: 5.133863e-02	ci left: 3.587363e-01	ci right 3.777405e-01	k: 3682	n:10000
KS ci ratio: 2.674103e-02	ci left: 6.731734e-01	ci right 6.915203e-01	k: 6824	n:10000
BCL7A   10000 perm   2 sec   (6076 perm/sec)   p_kst 6.824000e-01   p_cons 3.682000e-01   p_joint 7.175000e-01

Outputting figure to mutsig2_images.part000000000016/BCL7A.6_720_10000_0.6824_0.3682_0.7175.png
                gene_name: BCL7A
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 20 percent done.
BICC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.789543e-02	ci left: 6.544443e-01	ci right 6.730602e-01	k: 6638	n:10000
Cons ci ratio: 6.709020e-02	ci left: 2.458864e-01	ci right 2.630569e-01	k: 2544	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
BICC1   10000 perm   2 sec   (4657 perm/sec)   p_kst 1   p_cons 2.544000e-01   p_joint 6.638000e-01

Outputting figure to mutsig2_images.part000000000016/BICC1.6_3009_10000_1_0.2544_0.6638.png
                gene_name: BICC1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 22 percent done.
BICD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.229981e-01	ci left: 8.650182e-02	ci right 9.793702e-02	k: 921	n:10000
Cons ci ratio: 1.269826e-01	ci left: 8.144990e-02	ci right 9.259206e-02	k: 869	n:10000
KS ci ratio: 8.792570e-02	ci left: 1.584608e-01	ci right 1.731345e-01	k: 1657	n:10000
BICD1   10000 perm   2 sec   (4773 perm/sec)   p_kst 1.657000e-01   p_cons 8.690000e-02   p_joint 9.210000e-02

Joint ci ratio: 7.425455e-02	ci left: 1.177403e-01	ci right 1.268698e-01	k: 2445	n:20000
Cons ci ratio: 9.563005e-02	ci left: 7.378204e-02	ci right 8.124134e-02	k: 1549	n:20000
KS ci ratio: 6.026635e-02	ci left: 1.693119e-01	ci right 1.798828e-01	k: 3491	n:20000
BICD1   20000 perm   5 sec   (4299 perm/sec)   p_kst 1.745500e-01   p_cons 7.745000e-02   p_joint 1.222500e-01

Outputting figure to mutsig2_images.part000000000016/BICD1.6_2968_20000_0.17455_0.07745_0.12225.png
                gene_name: BICD1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 24 percent done.
BICD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.374621e-01	ci left: 7.000876e-02	ci right 8.044030e-02	k: 751	n:10000
Cons ci ratio: 8.944993e-02	ci left: 1.538460e-01	ci right 1.683520e-01	k: 1610	n:10000
KS ci ratio: 9.541650e-02	ci left: 1.374671e-01	ci right 1.513407e-01	k: 1443	n:10000
BICD2   10000 perm   2 sec   (5703 perm/sec)   p_kst 1.443000e-01   p_cons 1.610000e-01   p_joint 7.510000e-02

Joint ci ratio: 6.927520e-02	ci left: 1.331986e-01	ci right 1.428069e-01	k: 2759	n:20000
Cons ci ratio: 6.245623e-02	ci left: 1.593861e-01	ci right 1.697116e-01	k: 3290	n:20000
KS ci ratio: 6.723964e-02	ci left: 1.403443e-01	ci right 1.501591e-01	k: 2904	n:20000
BICD2   20000 perm   4 sec   (4943 perm/sec)   p_kst 1.452000e-01   p_cons 1.645000e-01   p_joint 1.379500e-01

Outputting figure to mutsig2_images.part000000000016/BICD2.6_2606_20000_0.1452_0.1645_0.13795.png
                gene_name: BICD2
               theta_stop: 0.069 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 26 percent done.
BMP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.974662e-02	ci left: 4.831544e-01	ci right 5.028497e-01	k: 4930	n:10000
Cons ci ratio: 1.256428e-01	ci left: 8.310086e-02	ci right 9.434008e-02	k: 886	n:10000
KS ci ratio: 2.975552e-02	ci left: 6.248728e-01	ci right 6.438489e-01	k: 6344	n:10000
BMP7   10000 perm   2 sec   (5711 perm/sec)   p_kst 6.344000e-01   p_cons 8.860000e-02   p_joint 4.930000e-01

Joint ci ratio: 3.738307e-02	ci left: 3.480660e-01	ci right 3.613762e-01	k: 7094	n:20000
Cons ci ratio: 8.816463e-02	ci left: 8.597060e-02	ci right 9.394908e-02	k: 1798	n:20000
KS ci ratio: 2.040388e-02	ci left: 6.418872e-01	ci right 6.551696e-01	k: 12971	n:20000
BMP7   20000 perm   4 sec   (5151 perm/sec)   p_kst 6.485500e-01   p_cons 8.990000e-02   p_joint 3.547000e-01

Outputting figure to mutsig2_images.part000000000016/BMP7.6_1324_20000_0.64855_0.0899_0.3547.png
                gene_name: BMP7
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 28 percent done.
BCL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.813331e-02	ci left: 1.308067e-01	ci right 1.444052e-01	k: 1375	n:10000
Cons ci ratio: 2.150889e-02	ci left: 7.602067e-01	ci right 7.768366e-01	k: 7686	n:10000
KS ci ratio: 1.699685e-01	ci left: 4.619368e-02	ci right 5.487054e-02	k: 504	n:10000
BCL6   10000 perm   2 sec   (5093 perm/sec)   p_kst 5.040000e-02   p_cons 7.686000e-01   p_joint 1.375000e-01

Joint ci ratio: 8.208660e-02	ci left: 9.813315e-02	ci right 1.065829e-01	k: 2046	n:20000
Cons ci ratio: 1.612481e-02	ci left: 7.410656e-01	ci right 7.531625e-01	k: 14943	n:20000
KS ci ratio: 1.213959e-01	ci left: 4.653451e-02	ci right 5.259730e-02	k: 990	n:20000
BCL6   20000 perm   4 sec   (4567 perm/sec)   p_kst 4.950000e-02   p_cons 7.471500e-01   p_joint 1.023000e-01

Joint ci ratio: 5.930135e-02	ci left: 1.233504e-01	ci right 1.309219e-01	k: 3813	n:30000
Cons ci ratio: 1.325474e-02	ci left: 7.396251e-01	ci right 7.495275e-01	k: 22338	n:30000
KS ci ratio: 1.016078e-01	ci left: 4.486009e-02	ci right 4.969474e-02	k: 1417	n:30000
BCL6   30000 perm   7 sec   (4375 perm/sec)   p_kst 4.723333e-02   p_cons 7.446000e-01   p_joint 1.271000e-01

Joint ci ratio: 6.008456e-02	ci left: 9.327793e-02	ci right 9.908084e-02	k: 3846	n:40000
Cons ci ratio: 1.144049e-02	ci left: 7.415782e-01	ci right 7.501361e-01	k: 29835	n:40000
KS ci ratio: 8.791397e-02	ci left: 4.526460e-02	ci right 4.945143e-02	k: 1893	n:40000
BCL6   40000 perm   9 sec   (4244 perm/sec)   p_kst 4.732500e-02   p_cons 7.458750e-01   p_joint 9.615000e-02

Outputting figure to mutsig2_images.part000000000016/BCL6.5_2153_40000_0.047325_0.74587_0.09615.png
                gene_name: BCL6
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.099 

Current progress: 30 percent done.
BCORL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.666916e-01	ci left: 4.801742e-02	ci right 5.684561e-02	k: 523	n:10000
Cons ci ratio: 2.928552e-01	ci left: 1.502126e-02	ci right 2.026513e-02	k: 175	n:10000
KS ci ratio: 2.967221e-02	ci left: 6.261796e-01	ci right 6.451413e-01	k: 6357	n:10000
BCORL1   10000 perm   3 sec   (3705 perm/sec)   p_kst 6.357000e-01   p_cons 1.750000e-02   p_joint 5.230000e-02

Joint ci ratio: 9.380531e-02	ci left: 7.652099e-02	ci right 8.410155e-02	k: 1605	n:20000
Cons ci ratio: 2.110880e-01	ci left: 1.515911e-02	ci right 1.878328e-02	k: 338	n:20000
KS ci ratio: 2.101410e-02	ci left: 6.282836e-01	ci right 6.416771e-01	k: 12700	n:20000
BCORL1   20000 perm   6 sec   (3303 perm/sec)   p_kst 6.350000e-01   p_cons 1.690000e-02   p_joint 8.025000e-02

Joint ci ratio: 9.205290e-02	ci left: 5.437022e-02	ci right 5.964931e-02	k: 1709	n:30000
Cons ci ratio: 1.761816e-01	ci left: 1.480177e-02	ci right 1.769301e-02	k: 486	n:30000
KS ci ratio: 1.706455e-02	ci left: 6.320639e-01	ci right 6.429761e-01	k: 19126	n:30000
BCORL1   30000 perm   9 sec   (3209 perm/sec)   p_kst 6.375333e-01   p_cons 1.620000e-02   p_joint 5.696667e-02

Joint ci ratio: 7.167464e-02	ci left: 6.707586e-02	ci right 7.208684e-02	k: 2782	n:40000
Cons ci ratio: 1.524988e-01	ci left: 1.500961e-02	ci right 1.751133e-02	k: 649	n:40000
KS ci ratio: 1.476433e-02	ci left: 6.332430e-01	ci right 6.426870e-01	k: 25519	n:40000
BCORL1   40000 perm   13 sec   (3161 perm/sec)   p_kst 6.379750e-01   p_cons 1.622500e-02   p_joint 6.955000e-02

Joint ci ratio: 5.811716e-02	ci left: 8.097104e-02	ci right 8.583746e-02	k: 4169	n:50000
Cons ci ratio: 1.302973e-01	ci left: 1.662037e-02	ci right 1.895610e-02	k: 888	n:50000
KS ci ratio: 1.322040e-02	ci left: 6.332284e-01	ci right 6.416757e-01	k: 31873	n:50000
BCORL1   50000 perm   16 sec   (3129 perm/sec)   p_kst 6.374600e-01   p_cons 1.776000e-02   p_joint 8.338000e-02

Joint ci ratio: 5.388612e-02	ci left: 7.886180e-02	ci right 8.324549e-02	k: 4862	n:60000
Cons ci ratio: 1.184260e-01	ci left: 1.687031e-02	ci right 1.901002e-02	k: 1075	n:60000
KS ci ratio: 1.205925e-02	ci left: 6.339560e-01	ci right 6.416640e-01	k: 38269	n:60000
BCORL1   60000 perm   19 sec   (3090 perm/sec)   p_kst 6.378167e-01   p_cons 1.791667e-02   p_joint 8.103333e-02

Joint ci ratio: 5.393314e-02	ci left: 6.827576e-02	ci right 7.207425e-02	k: 4911	n:70000
Cons ci ratio: 1.096561e-01	ci left: 1.694457e-02	ci right 1.892425e-02	k: 1254	n:70000
KS ci ratio: 1.115753e-02	ci left: 6.345416e-01	ci right 6.416755e-01	k: 44668	n:70000
BCORL1   70000 perm   23 sec   (3058 perm/sec)   p_kst 6.381143e-01   p_cons 1.791429e-02   p_joint 7.015714e-02

Joint ci ratio: 5.898122e-02	ci left: 5.077960e-02	ci right 5.387796e-02	k: 4185	n:80000
Cons ci ratio: 1.116020e-01	ci left: 1.433924e-02	ci right 1.604618e-02	k: 1214	n:80000
KS ci ratio: 1.042850e-02	ci left: 6.351471e-01	ci right 6.418179e-01	k: 51079	n:80000
BCORL1   80000 perm   27 sec   (3016 perm/sec)   p_kst 6.384875e-01   p_cons 1.517500e-02   p_joint 5.231250e-02

Joint ci ratio: 5.920641e-02	ci left: 4.506768e-02	ci right 4.782831e-02	k: 4179	n:90000
Cons ci ratio: 1.045180e-01	ci left: 1.458396e-02	ci right 1.620305e-02	k: 1384	n:90000
KS ci ratio: 9.885134e-03	ci left: 6.328467e-01	ci right 6.391446e-01	k: 57240	n:90000
BCORL1   90000 perm   30 sec   (2981 perm/sec)   p_kst 6.360000e-01   p_cons 1.537778e-02   p_joint 4.643333e-02

Joint ci ratio: 6.164074e-02	ci left: 3.767057e-02	ci right 4.007627e-02	k: 3886	n:100000
Cons ci ratio: 9.856712e-02	ci left: 1.480198e-02	ci right 1.634630e-02	k: 1556	n:100000
KS ci ratio: 9.379896e-03	ci left: 6.329088e-01	ci right 6.388833e-01	k: 63590	n:100000
BCORL1   100000 perm   34 sec   (2948 perm/sec)   p_kst 6.359000e-01   p_cons 1.556000e-02   p_joint 3.886000e-02

Outputting figure to mutsig2_images.part000000000016/BCORL1.5_5410_100000_0.6359_0.01556_0.03886.png
                gene_name: BCORL1
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.040 

Current progress: 31 percent done.
BEND3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.181702e-02	ci left: 7.550454e-01	ci right 7.718009e-01	k: 7635	n:10000
Cons ci ratio: 2.104908e-02	ci left: 7.679013e-01	ci right 7.843376e-01	k: 7762	n:10000
KS ci ratio: 3.874991e-02	ci left: 4.958504e-01	ci right 5.155463e-01	k: 5057	n:10000
BEND3   10000 perm   2 sec   (5710 perm/sec)   p_kst 5.057000e-01   p_cons 7.762000e-01   p_joint 7.635000e-01

Outputting figure to mutsig2_images.part000000000016/BEND3.5_2499_10000_0.5057_0.7762_0.7635.png
                gene_name: BEND3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 33 percent done.
BEND5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.010923e-01	ci left: 1.240539e-01	ci right 1.373620e-01	k: 1306	n:10000
Cons ci ratio: 9.145415e-02	ci left: 1.480561e-01	ci right 1.623454e-01	k: 1551	n:10000
KS ci ratio: 7.944208e-02	ci left: 1.879635e-01	ci right 2.036141e-01	k: 1957	n:10000
BEND5   10000 perm   2 sec   (5764 perm/sec)   p_kst 1.957000e-01   p_cons 1.551000e-01   p_joint 1.306000e-01

Joint ci ratio: 8.914826e-02	ci left: 8.420687e-02	ci right 9.211334e-02	k: 1762	n:20000
Cons ci ratio: 6.515406e-02	ci left: 1.482339e-01	ci right 1.582671e-01	k: 3064	n:20000
KS ci ratio: 5.556674e-02	ci left: 1.936837e-01	ci right 2.048038e-01	k: 3984	n:20000
BEND5   20000 perm   4 sec   (5158 perm/sec)   p_kst 1.992000e-01   p_cons 1.532000e-01   p_joint 8.810000e-02

Outputting figure to mutsig2_images.part000000000016/BEND5.5_1290_20000_0.1992_0.1532_0.0881.png
                gene_name: BEND5
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.092 

Current progress: 35 percent done.
BEND7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.436189e-02	ci left: 8.752086e-01	ci right 8.879681e-01	k: 8817	n:10000
Cons ci ratio: 2.342837e-02	ci left: 7.280508e-01	ci right 7.454111e-01	k: 7368	n:10000
KS ci ratio: 2.688299e-02	ci left: 6.708565e-01	ci right 6.892385e-01	k: 6801	n:10000
BEND7   10000 perm   2 sec   (5219 perm/sec)   p_kst 6.801000e-01   p_cons 7.368000e-01   p_joint 8.817000e-01

Outputting figure to mutsig2_images.part000000000016/BEND7.5_1486_10000_0.6801_0.7368_0.8817.png
                gene_name: BEND7
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 37 percent done.
BHMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.328612e-02	ci left: 4.407139e-01	ci right 4.603149e-01	k: 4505	n:10000
Cons ci ratio: 4.361983e-02	ci left: 4.369227e-01	ci right 4.565083e-01	k: 4467	n:10000
KS ci ratio: 6.126117e-02	ci left: 2.815149e-01	ci right 2.994073e-01	k: 2904	n:10000
BHMT   10000 perm   2 sec   (5391 perm/sec)   p_kst 2.904000e-01   p_cons 4.467000e-01   p_joint 4.505000e-01

Outputting figure to mutsig2_images.part000000000016/BHMT.5_1253_10000_0.2904_0.4467_0.4505.png
                gene_name: BHMT
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 39 percent done.
BHMT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.317267e-02	ci left: 4.420111e-01	ci right 4.616170e-01	k: 4518	n:10000
Cons ci ratio: 1.271204e-02	ci left: 8.989819e-01	ci right 9.105811e-01	k: 9049	n:10000
KS ci ratio: 6.642498e-02	ci left: 2.496437e-01	ci right 2.668973e-01	k: 2582	n:10000
BHMT2   10000 perm   2 sec   (5460 perm/sec)   p_kst 2.582000e-01   p_cons 9.049000e-01   p_joint 4.518000e-01

Outputting figure to mutsig2_images.part000000000016/BHMT2.5_1124_10000_0.2582_0.9049_0.4518.png
                gene_name: BHMT2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 41 percent done.
BMP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.135773e-02	ci left: 7.627374e-01	ci right 7.793044e-01	k: 7711	n:10000
KS ci ratio: 1.689324e-02	ci left: 8.361272e-01	ci right 8.504722e-01	k: 8434	n:10000
BMP15   10000 perm   2 sec   (5221 perm/sec)   p_kst 8.434000e-01   p_cons 7.711000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BMP15.5_1187_10000_0.8434_0.7711_1.png
                gene_name: BMP15
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
BMP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.338274e-01	ci left: 1.133070e-02	ci right 1.595903e-02	k: 135	n:10000
Cons ci ratio: 4.332111e-02	ci left: 4.403148e-01	ci right 4.599142e-01	k: 4501	n:10000
KS ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
BMP3   10000 perm   2 sec   (5563 perm/sec)   p_kst 1.160000e-02   p_cons 4.501000e-01   p_joint 1.350000e-02

Joint ci ratio: 1.646773e-01	ci left: 2.527745e-02	ci right 2.986128e-02	k: 550	n:20000
Cons ci ratio: 3.086837e-02	ci left: 4.394437e-01	ci right 4.532719e-01	k: 8927	n:20000
KS ci ratio: 2.690752e-01	ci left: 9.087199e-03	ci right 1.195778e-02	k: 209	n:20000
BMP3   20000 perm   4 sec   (4981 perm/sec)   p_kst 1.045000e-02   p_cons 4.463500e-01   p_joint 2.750000e-02

Joint ci ratio: 9.673027e-02	ci left: 4.938411e-02	ci right 5.443644e-02	k: 1556	n:30000
Cons ci ratio: 2.532140e-02	ci left: 4.384332e-01	ci right 4.497109e-01	k: 13322	n:30000
KS ci ratio: 2.255632e-01	ci left: 8.842131e-03	ci right 1.112094e-02	k: 298	n:30000
BMP3   30000 perm   6 sec   (4725 perm/sec)   p_kst 9.933333e-03   p_cons 4.440667e-01   p_joint 5.186667e-02

Joint ci ratio: 1.069812e-01	ci left: 3.073506e-02	ci right 3.423324e-02	k: 1298	n:40000
Cons ci ratio: 2.220641e-02	ci left: 4.330052e-01	ci right 4.427538e-01	k: 17515	n:40000
KS ci ratio: 1.996022e-01	ci left: 8.596380e-03	ci right 1.052582e-02	k: 381	n:40000
BMP3   40000 perm   9 sec   (4565 perm/sec)   p_kst 9.525000e-03   p_cons 4.378750e-01   p_joint 3.245000e-02

Joint ci ratio: 1.056001e-01	ci left: 2.540195e-02	ci right 2.825334e-02	k: 1340	n:50000
Cons ci ratio: 1.989673e-02	ci left: 4.326661e-01	ci right 4.413813e-01	k: 21851	n:50000
KS ci ratio: 1.801561e-01	ci left: 8.534549e-03	ci right 1.024314e-02	k: 468	n:50000
BMP3   50000 perm   11 sec   (4436 perm/sec)   p_kst 9.360000e-03   p_cons 4.370200e-01   p_joint 2.680000e-02

Joint ci ratio: 9.200413e-02	ci left: 2.801393e-02	ci right 3.073185e-02	k: 1761	n:60000
Cons ci ratio: 1.817322e-02	ci left: 4.327762e-01	ci right 4.407299e-01	k: 26205	n:60000
KS ci ratio: 1.599042e-01	ci left: 9.123252e-03	ci right 1.072469e-02	k: 594	n:60000
BMP3   60000 perm   14 sec   (4322 perm/sec)   p_kst 9.900000e-03   p_cons 4.367500e-01   p_joint 2.935000e-02

Joint ci ratio: 1.014794e-01	ci left: 1.981125e-02	ci right 2.194301e-02	k: 1460	n:70000
Cons ci ratio: 1.683229e-02	ci left: 4.328644e-01	ci right 4.402266e-01	k: 30558	n:70000
KS ci ratio: 1.490398e-01	ci left: 9.055967e-03	ci right 1.052795e-02	k: 684	n:70000
BMP3   70000 perm   17 sec   (4222 perm/sec)   p_kst 9.771429e-03   p_cons 4.365429e-01   p_joint 2.085714e-02

Joint ci ratio: 1.012972e-01	ci left: 1.744340e-02	ci right 1.931676e-02	k: 1469	n:80000
Cons ci ratio: 1.575659e-02	ci left: 4.327472e-01	ci right 4.396324e-01	k: 34895	n:80000
KS ci ratio: 1.398529e-01	ci left: 9.044482e-03	ci right 1.041642e-02	k: 777	n:80000
BMP3   80000 perm   19 sec   (4134 perm/sec)   p_kst 9.712500e-03   p_cons 4.361875e-01   p_joint 1.836250e-02

Joint ci ratio: 9.526223e-02	ci left: 1.758623e-02	ci right 1.935611e-02	k: 1661	n:90000
Cons ci ratio: 1.484706e-02	ci left: 4.332231e-01	ci right 4.397144e-01	k: 39282	n:90000
KS ci ratio: 1.314195e-01	ci left: 9.145205e-03	ci right 1.044224e-02	k: 880	n:90000
BMP3   90000 perm   22 sec   (4054 perm/sec)   p_kst 9.777778e-03   p_cons 4.364667e-01   p_joint 1.845556e-02

Joint ci ratio: 9.213454e-02	ci left: 1.696017e-02	ci right 1.860797e-02	k: 1777	n:100000
Cons ci ratio: 1.407050e-02	ci left: 4.339026e-01	ci right 4.400611e-01	k: 43698	n:100000
KS ci ratio: 1.265754e-01	ci left: 8.898349e-03	ci right 1.011036e-02	k: 949	n:100000
BMP3   100000 perm   25 sec   (3976 perm/sec)   p_kst 9.490000e-03   p_cons 4.369800e-01   p_joint 1.777000e-02

Joint ci ratio: 8.467948e-02	ci left: 1.829928e-02	ci right 1.992622e-02	k: 2101	n:110000
Cons ci ratio: 1.343626e-02	ci left: 4.332938e-01	ci right 4.391641e-01	k: 47985	n:110000
KS ci ratio: 1.196489e-01	ci left: 9.085112e-03	ci right 1.025005e-02	k: 1062	n:110000
BMP3   110000 perm   28 sec   (3894 perm/sec)   p_kst 9.654545e-03   p_cons 4.362273e-01   p_joint 1.910000e-02

Joint ci ratio: 8.843863e-02	ci left: 1.539544e-02	ci right 1.682809e-02	k: 1932	n:120000
Cons ci ratio: 1.287478e-02	ci left: 4.330168e-01	ci right 4.386363e-01	k: 52299	n:120000
KS ci ratio: 1.155983e-01	ci left: 8.942682e-03	ci right 1.004788e-02	k: 1138	n:120000
BMP3   120000 perm   31 sec   (3826 perm/sec)   p_kst 9.483333e-03   p_cons 4.358250e-01   p_joint 1.610000e-02

Joint ci ratio: 6.265427e-02	ci left: 2.831416e-02	ci right 3.015308e-02	k: 3799	n:130000
Cons ci ratio: 1.281023e-02	ci left: 4.160162e-01	ci right 4.213874e-01	k: 54431	n:130000
KS ci ratio: 1.108782e-01	ci left: 8.994769e-03	ci right 1.005805e-02	k: 1237	n:130000
BMP3   130000 perm   35 sec   (3761 perm/sec)   p_kst 9.515385e-03   p_cons 4.187000e-01   p_joint 2.922308e-02

Joint ci ratio: 6.258632e-02	ci left: 2.640339e-02	ci right 2.811627e-02	k: 3815	n:140000
Cons ci ratio: 1.235532e-02	ci left: 4.156785e-01	ci right 4.208534e-01	k: 58557	n:140000
KS ci ratio: 1.062922e-01	ci left: 9.109745e-03	ci right 1.013929e-02	k: 1346	n:140000
BMP3   140000 perm   38 sec   (3699 perm/sec)   p_kst 9.614286e-03   p_cons 4.182643e-01   p_joint 2.725000e-02

Joint ci ratio: 6.207952e-02	ci left: 2.508890e-02	ci right 2.670283e-02	k: 3883	n:150000
Cons ci ratio: 1.194057e-02	ci left: 4.155955e-01	ci right 4.205944e-01	k: 62714	n:150000
KS ci ratio: 1.019493e-01	ci left: 9.262157e-03	ci right 1.026360e-02	k: 1463	n:150000
BMP3   150000 perm   41 sec   (3623 perm/sec)   p_kst 9.753333e-03   p_cons 4.180933e-01   p_joint 2.588667e-02

Joint ci ratio: 6.482460e-02	ci left: 2.161894e-02	ci right 2.307344e-02	k: 3574	n:160000
Cons ci ratio: 1.156631e-02	ci left: 4.154692e-01	ci right 4.203088e-01	k: 66862	n:160000
KS ci ratio: 1.029070e-01	ci left: 8.524767e-03	ci right 9.455656e-03	k: 1437	n:160000
BMP3   160000 perm   45 sec   (3564 perm/sec)   p_kst 8.981250e-03   p_cons 4.178875e-01   p_joint 2.233750e-02

Joint ci ratio: 6.733379e-02	ci left: 1.888846e-02	ci right 2.021035e-02	k: 3322	n:170000
Cons ci ratio: 1.120822e-02	ci left: 4.160947e-01	ci right 4.207905e-01	k: 71135	n:170000
KS ci ratio: 9.986332e-02	ci left: 8.533567e-03	ci right 9.436238e-03	k: 1526	n:170000
BMP3   170000 perm   49 sec   (3503 perm/sec)   p_kst 8.976471e-03   p_cons 4.184412e-01   p_joint 1.954118e-02

Outputting figure to mutsig2_images.part000000000016/BMP3.5_1431_170000_0.0089765_0.41844_0.019541.png
                gene_name: BMP3
               theta_stop: 0.100 
                    nperm: 170000 
                     p_ks: 0.0090 
        ci_ks_bounds_left: 0.0085 
       ci_ks_bounds_right: 0.0094 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 44 percent done.
BMP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.386945e-02	ci left: 7.206775e-01	ci right 7.381887e-01	k: 7295	n:10000
Cons ci ratio: 7.740754e-02	ci left: 1.961390e-01	ci right 2.120337e-01	k: 2040	n:10000
KS ci ratio: 1.436877e-02	ci left: 8.751064e-01	ci right 8.878705e-01	k: 8816	n:10000
BMP5   10000 perm   2 sec   (5526 perm/sec)   p_kst 8.816000e-01   p_cons 2.040000e-01   p_joint 7.295000e-01

Outputting figure to mutsig2_images.part000000000016/BMP5.5_1393_10000_0.8816_0.204_0.7295.png
                gene_name: BMP5
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 46 percent done.
BCMO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.597208e-02	ci left: 4.111978e-01	ci right 4.306483e-01	k: 4209	n:10000
Cons ci ratio: 1.679726e-02	ci left: 8.376546e-01	ci right 8.519439e-01	k: 8449	n:10000
KS ci ratio: 6.807679e-02	ci left: 2.404497e-01	ci right 2.574968e-01	k: 2489	n:10000
BCMO1   10000 perm   2 sec   (5664 perm/sec)   p_kst 2.489000e-01   p_cons 8.449000e-01   p_joint 4.209000e-01

Outputting figure to mutsig2_images.part000000000016/BCMO1.4_1688_10000_0.2489_0.8449_0.4209.png
                gene_name: BCMO1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 48 percent done.
BEST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.082487e-02	ci left: 7.716487e-01	ci right 7.879880e-01	k: 7799	n:10000
Cons ci ratio: 4.510603e-02	ci left: 4.204677e-01	ci right 4.399730e-01	k: 4302	n:10000
KS ci ratio: 9.572208e-03	ci left: 9.391052e-01	ci right 9.482342e-01	k: 9438	n:10000
BEST3   10000 perm   2 sec   (5464 perm/sec)   p_kst 9.438000e-01   p_cons 4.302000e-01   p_joint 7.799000e-01

Outputting figure to mutsig2_images.part000000000016/BEST3.4_2043_10000_0.9438_0.4302_0.7799.png
                gene_name: BEST3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 50 percent done.
BIRC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.626986e-02	ci left: 5.288695e-01	ci right 5.485080e-01	k: 5387	n:10000
KS ci ratio: 2.396621e-02	ci left: 7.190618e-01	ci right 7.366053e-01	k: 7279	n:10000
BIRC2   10000 perm   2 sec   (5270 perm/sec)   p_kst 7.279000e-01   p_cons 5.387000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BIRC2.4_1889_10000_0.7279_0.5387_1.png
                gene_name: BIRC2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
BLMH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.214091e-01	ci left: 8.864084e-02	ci right 1.001967e-01	k: 943	n:10000
Cons ci ratio: 1.033792e-01	ci left: 1.191644e-01	ci right 1.322545e-01	k: 1256	n:10000
KS ci ratio: 1.004742e-01	ci left: 1.254236e-01	ci right 1.387915e-01	k: 1320	n:10000
BLMH   10000 perm   2 sec   (5908 perm/sec)   p_kst 1.320000e-01   p_cons 1.256000e-01   p_joint 9.430000e-02

Joint ci ratio: 8.159898e-02	ci left: 9.921306e-02	ci right 1.077026e-01	k: 2068	n:20000
Cons ci ratio: 7.596290e-02	ci left: 1.130188e-01	ci right 1.219927e-01	k: 2349	n:20000
KS ci ratio: 6.986361e-02	ci left: 1.312282e-01	ci right 1.407779e-01	k: 2719	n:20000
BLMH   20000 perm   4 sec   (5208 perm/sec)   p_kst 1.359500e-01   p_cons 1.174500e-01   p_joint 1.034000e-01

Outputting figure to mutsig2_images.part000000000016/BLMH.4_1416_20000_0.13595_0.11745_0.1034.png
                gene_name: BLMH
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.11 

Current progress: 54 percent done.
BLZF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.050957e-02	ci left: 2.277054e-01	ci right 2.444486e-01	k: 2360	n:10000
Cons ci ratio: 4.352291e-02	ci left: 4.380201e-01	ci right 4.576103e-01	k: 4478	n:10000
KS ci ratio: 8.630829e-02	ci left: 1.635689e-01	ci right 1.784233e-01	k: 1709	n:10000
BLZF1   10000 perm   2 sec   (5644 perm/sec)   p_kst 1.709000e-01   p_cons 4.478000e-01   p_joint 2.360000e-01

Outputting figure to mutsig2_images.part000000000016/BLZF1.4_1227_10000_0.1709_0.4478_0.236.png
                gene_name: BLZF1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 56 percent done.
BMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.983124e-01	ci left: 3.386163e-02	ci right 4.141078e-02	k: 375	n:10000
Cons ci ratio: 7.991661e-01	ci left: 1.458544e-03	ci right 3.449143e-03	k: 23	n:10000
KS ci ratio: 1.977813e-02	ci left: 7.890818e-01	ci right 8.049448e-01	k: 7971	n:10000
BMP1   10000 perm   2 sec   (4720 perm/sec)   p_kst 7.971000e-01   p_cons 2.300000e-03   p_joint 3.750000e-02

Joint ci ratio: 1.417063e-01	ci left: 3.423328e-02	ci right 3.950247e-02	k: 736	n:20000
Cons ci ratio: 6.438316e-01	ci left: 1.261006e-03	ci right 2.491096e-03	k: 36	n:20000
KS ci ratio: 1.392231e-02	ci left: 7.929232e-01	ci right 8.040899e-01	k: 15971	n:20000
BMP1   20000 perm   5 sec   (4231 perm/sec)   p_kst 7.985500e-01   p_cons 1.800000e-03   p_joint 3.680000e-02

Joint ci ratio: 1.392546e-01	ci left: 2.393877e-02	ci right 2.755387e-02	k: 771	n:30000
Cons ci ratio: 5.187146e-01	ci left: 1.410359e-03	ci right 2.423346e-03	k: 56	n:30000
KS ci ratio: 1.137628e-02	ci left: 7.937138e-01	ci right 8.028283e-01	k: 23949	n:30000
BMP1   30000 perm   7 sec   (4053 perm/sec)   p_kst 7.983000e-01   p_cons 1.866667e-03   p_joint 2.570000e-02

Joint ci ratio: 9.425323e-02	ci left: 3.949303e-02	ci right 4.342389e-02	k: 1657	n:40000
Cons ci ratio: 4.647996e-01	ci left: 1.364457e-03	ci right 2.210510e-03	k: 70	n:40000
KS ci ratio: 1.014197e-02	ci left: 7.847667e-01	ci right 7.927913e-01	k: 31552	n:40000
BMP1   40000 perm   10 sec   (3937 perm/sec)   p_kst 7.888000e-01   p_cons 1.750000e-03   p_joint 4.142500e-02

Joint ci ratio: 8.723116e-02	ci left: 3.712410e-02	ci right 4.052971e-02	k: 1940	n:50000
Cons ci ratio: 4.273434e-01	ci left: 1.322391e-03	ci right 2.057410e-03	k: 83	n:50000
KS ci ratio: 9.070694e-03	ci left: 7.852158e-01	ci right 7.923906e-01	k: 39441	n:50000
BMP1   50000 perm   13 sec   (3847 perm/sec)   p_kst 7.888200e-01   p_cons 1.660000e-03   p_joint 3.880000e-02

Joint ci ratio: 8.502137e-02	ci left: 3.276002e-02	ci right 3.568526e-02	k: 2052	n:60000
Cons ci ratio: 3.936464e-01	ci left: 1.326212e-03	ci right 1.990155e-03	k: 98	n:60000
KS ci ratio: 8.291632e-03	ci left: 7.850761e-01	ci right 7.916293e-01	k: 47302	n:60000
BMP1   60000 perm   16 sec   (3767 perm/sec)   p_kst 7.883667e-01   p_cons 1.633333e-03   p_joint 3.420000e-02

Joint ci ratio: 8.614844e-02	ci left: 2.748956e-02	ci right 2.997828e-02	k: 2010	n:70000
Cons ci ratio: 3.620986e-01	ci left: 1.369517e-03	ci right 1.987257e-03	k: 116	n:70000
KS ci ratio: 7.700101e-03	ci left: 7.842926e-01	ci right 7.903693e-01	k: 55114	n:70000
BMP1   70000 perm   19 sec   (3702 perm/sec)   p_kst 7.873429e-01   p_cons 1.657143e-03   p_joint 2.871429e-02

Joint ci ratio: 8.451410e-02	ci left: 2.507962e-02	ci right 2.730492e-02	k: 2094	n:80000
Cons ci ratio: 4.326670e-01	ci left: 8.041499e-04	ci right 1.258290e-03	k: 81	n:80000
KS ci ratio: 7.209618e-03	ci left: 7.841714e-01	ci right 7.898578e-01	k: 62962	n:80000
BMP1   80000 perm   22 sec   (3642 perm/sec)   p_kst 7.870250e-01   p_cons 1.012500e-03   p_joint 2.617500e-02

Joint ci ratio: 8.649724e-02	ci left: 2.134519e-02	ci right 2.328577e-02	k: 2007	n:90000
Cons ci ratio: 4.225001e-01	ci left: 7.544562e-04	ci right 1.167690e-03	k: 85	n:90000
KS ci ratio: 6.789462e-03	ci left: 7.847233e-01	ci right 7.900804e-01	k: 70867	n:90000
BMP1   90000 perm   25 sec   (3588 perm/sec)   p_kst 7.874111e-01   p_cons 9.444444e-04   p_joint 2.230000e-02

Joint ci ratio: 8.758022e-02	ci left: 1.877914e-02	ci right 2.050888e-02	k: 1963	n:100000
Cons ci ratio: 3.978206e-01	ci left: 7.776701e-04	ci right 1.172200e-03	k: 96	n:100000
KS ci ratio: 6.443762e-03	ci left: 7.847202e-01	ci right 7.898031e-01	k: 78727	n:100000
BMP1   100000 perm   28 sec   (3532 perm/sec)   p_kst 7.872700e-01   p_cons 9.600000e-04   p_joint 1.963000e-02

Joint ci ratio: 8.830304e-02	ci left: 1.682224e-02	ci right 1.838516e-02	k: 1935	n:110000
Cons ci ratio: 3.752801e-01	ci left: 8.054719e-04	ci right 1.185268e-03	k: 108	n:110000
KS ci ratio: 6.153839e-03	ci left: 7.842945e-01	ci right 7.891449e-01	k: 86540	n:110000
BMP1   110000 perm   32 sec   (3481 perm/sec)   p_kst 7.867273e-01   p_cons 9.818182e-04   p_joint 1.759091e-02

Joint ci ratio: 9.876131e-02	ci left: 1.231795e-02	ci right 1.360575e-02	k: 1554	n:120000
Cons ci ratio: 3.606863e-01	ci left: 8.064162e-04	ci right 1.168399e-03	k: 117	n:120000
KS ci ratio: 5.906665e-03	ci left: 7.835513e-01	ci right 7.882015e-01	k: 94306	n:120000
BMP1   120000 perm   35 sec   (3433 perm/sec)   p_kst 7.858833e-01   p_cons 9.750000e-04   p_joint 1.295000e-02

Joint ci ratio: 1.055813e-01	ci left: 9.938023e-03	ci right 1.105321e-02	k: 1363	n:130000
Cons ci ratio: 3.532859e-01	ci left: 7.793946e-04	ci right 1.120422e-03	k: 122	n:130000
KS ci ratio: 5.677253e-03	ci left: 7.835056e-01	ci right 7.879740e-01	k: 102147	n:130000
BMP1   130000 perm   38 sec   (3384 perm/sec)   p_kst 7.857462e-01   p_cons 9.384615e-04   p_joint 1.048462e-02

Joint ci ratio: 1.159859e-01	ci left: 7.623237e-03	ci right 8.568735e-03	k: 1132	n:140000
Cons ci ratio: 3.359727e-01	ci left: 8.085508e-04	ci right 1.141248e-03	k: 135	n:140000
KS ci ratio: 5.480190e-03	ci left: 7.830034e-01	ci right 7.873133e-01	k: 109923	n:140000
BMP1   140000 perm   42 sec   (3336 perm/sec)   p_kst 7.851643e-01   p_cons 9.642857e-04   p_joint 8.085714e-03

Joint ci ratio: 1.133272e-01	ci left: 7.464662e-03	ci right 8.367848e-03	k: 1186	n:150000
Cons ci ratio: 3.199055e-01	ci left: 8.403039e-04	ci right 1.166147e-03	k: 149	n:150000
KS ci ratio: 5.298095e-03	ci left: 7.828386e-01	ci right 7.870037e-01	k: 117739	n:150000
BMP1   150000 perm   46 sec   (3290 perm/sec)   p_kst 7.849267e-01   p_cons 9.933333e-04   p_joint 7.906667e-03

Joint ci ratio: 1.104401e-01	ci left: 7.380834e-03	ci right 8.249644e-03	k: 1249	n:160000
Cons ci ratio: 3.078274e-01	ci left: 8.568808e-04	ci right 1.174148e-03	k: 161	n:160000
KS ci ratio: 5.130548e-03	ci left: 7.828596e-01	ci right 7.868926e-01	k: 125581	n:160000
BMP1   160000 perm   49 sec   (3245 perm/sec)   p_kst 7.848812e-01   p_cons 1.006250e-03   p_joint 7.806250e-03

Joint ci ratio: 8.620357e-02	ci left: 1.149931e-02	ci right 1.254096e-02	k: 2042	n:170000
Cons ci ratio: 2.953273e-01	ci left: 8.826026e-04	ci right 1.193641e-03	k: 175	n:170000
KS ci ratio: 4.985755e-03	ci left: 7.823488e-01	ci right 7.862650e-01	k: 133333	n:170000
BMP1   170000 perm   53 sec   (3202 perm/sec)   p_kst 7.843118e-01   p_cons 1.029412e-03   p_joint 1.201176e-02

Joint ci ratio: 6.558390e-02	ci left: 1.882246e-02	ci right 2.010420e-02	k: 3502	n:180000
Cons ci ratio: 2.880552e-01	ci left: 8.799113e-04	ci right 1.180976e-03	k: 184	n:180000
KS ci ratio: 4.845372e-03	ci left: 7.823981e-01	ci right 7.862038e-01	k: 141175	n:180000
BMP1   180000 perm   57 sec   (3161 perm/sec)   p_kst 7.843056e-01   p_cons 1.022222e-03   p_joint 1.945556e-02

Joint ci ratio: 6.428483e-02	ci left: 1.857731e-02	ci right 1.981637e-02	k: 3646	n:190000
Cons ci ratio: 2.842437e-01	ci left: 8.580261e-04	ci right 1.147021e-03	k: 189	n:190000
KS ci ratio: 4.713574e-03	ci left: 7.826337e-01	ci right 7.863366e-01	k: 149053	n:190000
BMP1   190000 perm   61 sec   (3119 perm/sec)   p_kst 7.844895e-01   p_cons 9.947368e-04   p_joint 1.918947e-02

Joint ci ratio: 6.355719e-02	ci left: 1.807142e-02	ci right 1.926259e-02	k: 3732	n:200000
Cons ci ratio: 2.777425e-01	ci left: 8.569543e-04	ci right 1.137832e-03	k: 198	n:200000
KS ci ratio: 4.592926e-03	ci left: 7.827766e-01	ci right 7.863851e-01	k: 156917	n:200000
BMP1   200000 perm   65 sec   (3080 perm/sec)   p_kst 7.845850e-01   p_cons 9.900000e-04   p_joint 1.866000e-02

Joint ci ratio: 6.289479e-02	ci left: 1.759036e-02	ci right 1.873728e-02	k: 3813	n:210000
Cons ci ratio: 2.743209e-01	ci left: 8.383075e-04	ci right 1.109105e-03	k: 203	n:210000
KS ci ratio: 4.503436e-03	ci left: 7.812164e-01	ci right 7.847472e-01	k: 164427	n:210000
BMP1   210000 perm   69 sec   (3042 perm/sec)   p_kst 7.829857e-01   p_cons 9.666667e-04   p_joint 1.815714e-02

Joint ci ratio: 6.107322e-02	ci left: 1.782011e-02	ci right 1.894718e-02	k: 4043	n:220000
Cons ci ratio: 2.672105e-01	ci left: 8.468095e-04	ci right 1.112076e-03	k: 214	n:220000
KS ci ratio: 4.397474e-03	ci left: 7.814448e-01	ci right 7.848932e-01	k: 172298	n:220000
BMP1   220000 perm   73 sec   (3003 perm/sec)   p_kst 7.831727e-01   p_cons 9.727273e-04   p_joint 1.837727e-02

Joint ci ratio: 6.252987e-02	ci left: 1.627440e-02	ci right 1.732913e-02	k: 3863	n:230000
Cons ci ratio: 2.629656e-01	ci left: 8.384036e-04	ci right 1.096178e-03	k: 221	n:230000
KS ci ratio: 4.304708e-03	ci left: 7.811745e-01	ci right 7.845488e-01	k: 180059	n:230000
BMP1   230000 perm   78 sec   (2953 perm/sec)   p_kst 7.828652e-01   p_cons 9.608696e-04   p_joint 1.679565e-02

Joint ci ratio: 5.839660e-02	ci left: 1.789071e-02	ci right 1.897097e-02	k: 4422	n:240000
Cons ci ratio: 2.529078e-01	ci left: 8.736252e-04	ci right 1.130338e-03	k: 239	n:240000
KS ci ratio: 4.215242e-03	ci left: 7.811156e-01	ci right 7.844192e-01	k: 187865	n:240000
BMP1   240000 perm   82 sec   (2913 perm/sec)   p_kst 7.827708e-01   p_cons 9.958333e-04   p_joint 1.842500e-02

Joint ci ratio: 5.837823e-02	ci left: 1.719855e-02	ci right 1.823668e-02	k: 4428	n:250000
Cons ci ratio: 2.468118e-01	ci left: 8.836757e-04	ci right 1.136123e-03	k: 251	n:250000
KS ci ratio: 4.131714e-03	ci left: 7.810139e-01	ci right 7.842515e-01	k: 195659	n:250000
BMP1   250000 perm   87 sec   (2875 perm/sec)   p_kst 7.826360e-01   p_cons 1.004000e-03   p_joint 1.771200e-02

Joint ci ratio: 5.938131e-02	ci left: 1.599487e-02	ci right 1.697749e-02	k: 4285	n:260000
Cons ci ratio: 2.415948e-01	ci left: 8.894075e-04	ci right 1.137317e-03	k: 262	n:260000
KS ci ratio: 4.051266e-03	ci left: 7.810634e-01	ci right 7.842380e-01	k: 203490	n:260000
BMP1   260000 perm   92 sec   (2833 perm/sec)   p_kst 7.826538e-01   p_cons 1.007692e-03   p_joint 1.648077e-02

Joint ci ratio: 5.866686e-02	ci left: 1.578921e-02	ci right 1.674714e-02	k: 4391	n:270000
Cons ci ratio: 2.371288e-01	ci left: 8.912826e-04	ci right 1.134448e-03	k: 272	n:270000
KS ci ratio: 3.975904e-03	ci left: 7.810616e-01	ci right 7.841768e-01	k: 211308	n:270000
BMP1   270000 perm   97 sec   (2795 perm/sec)   p_kst 7.826222e-01   p_cons 1.007407e-03   p_joint 1.626296e-02

Joint ci ratio: 5.705617e-02	ci left: 1.610533e-02	ci right 1.705472e-02	k: 4641	n:280000
Cons ci ratio: 2.341472e-01	ci left: 8.829748e-04	ci right 1.120406e-03	k: 279	n:280000
KS ci ratio: 3.901934e-03	ci left: 7.812931e-01	ci right 7.843511e-01	k: 219191	n:280000
BMP1   280000 perm   101 sec   (2763 perm/sec)   p_kst 7.828250e-01   p_cons 9.964286e-04   p_joint 1.657500e-02

Joint ci ratio: 5.594434e-02	ci left: 1.618231e-02	ci right 1.711705e-02	k: 4827	n:290000
Cons ci ratio: 2.292847e-01	ci left: 8.915053e-04	ci right 1.125548e-03	k: 291	n:290000
KS ci ratio: 3.833651e-03	ci left: 7.813569e-01	ci right 7.843615e-01	k: 227030	n:290000
BMP1   290000 perm   106 sec   (2729 perm/sec)   p_kst 7.828621e-01   p_cons 1.003448e-03   p_joint 1.664483e-02

Joint ci ratio: 5.207700e-02	ci left: 1.805371e-02	ci right 1.902229e-02	k: 5560	n:300000
Cons ci ratio: 2.265861e-01	ci left: 8.837891e-04	ci right 1.112693e-03	k: 298	n:300000
KS ci ratio: 3.768536e-03	ci left: 7.814437e-01	ci right 7.843975e-01	k: 234877	n:300000
BMP1   300000 perm   111 sec   (2698 perm/sec)   p_kst 7.829233e-01   p_cons 9.933333e-04   p_joint 1.853333e-02

Joint ci ratio: 5.177616e-02	ci left: 1.768456e-02	ci right 1.862770e-02	k: 5627	n:310000
Cons ci ratio: 2.232514e-01	ci left: 8.826764e-04	ci right 1.107465e-03	k: 307	n:310000
KS ci ratio: 3.708776e-03	ci left: 7.813281e-01	ci right 7.842344e-01	k: 242663	n:310000
BMP1   310000 perm   116 sec   (2666 perm/sec)   p_kst 7.827839e-01   p_cons 9.903226e-04   p_joint 1.815161e-02

Joint ci ratio: 5.085630e-02	ci left: 1.776434e-02	ci right 1.869441e-02	k: 5832	n:320000
Cons ci ratio: 2.193681e-01	ci left: 8.875627e-04	ci right 1.109134e-03	k: 318	n:320000
KS ci ratio: 3.652373e-03	ci left: 7.811636e-01	ci right 7.840250e-01	k: 250431	n:320000
BMP1   320000 perm   121 sec   (2637 perm/sec)   p_kst 7.825969e-01   p_cons 9.937500e-04   p_joint 1.822500e-02

Joint ci ratio: 5.004712e-02	ci left: 1.779453e-02	ci right 1.871093e-02	k: 6022	n:330000
Cons ci ratio: 2.160085e-01	ci left: 8.893179e-04	ci right 1.107476e-03	k: 328	n:330000
KS ci ratio: 3.598465e-03	ci left: 7.810095e-01	ci right 7.838280e-01	k: 258199	n:330000
BMP1   330000 perm   127 sec   (2606 perm/sec)   p_kst 7.824212e-01   p_cons 9.939394e-04   p_joint 1.824848e-02

Joint ci ratio: 4.937667e-02	ci left: 1.775041e-02	ci right 1.865194e-02	k: 6187	n:340000
Cons ci ratio: 2.137475e-01	ci left: 8.826414e-04	ci right 1.096599e-03	k: 335	n:340000
KS ci ratio: 3.545740e-03	ci left: 7.809738e-01	ci right 7.837508e-01	k: 266004	n:340000
BMP1   340000 perm   132 sec   (2578 perm/sec)   p_kst 7.823647e-01   p_cons 9.852941e-04   p_joint 1.819706e-02

Joint ci ratio: 4.944264e-02	ci left: 1.720646e-02	ci right 1.808156e-02	k: 6174	n:350000
Cons ci ratio: 2.118654e-01	ci left: 8.736519e-04	ci right 1.083323e-03	k: 341	n:350000
KS ci ratio: 3.496145e-03	ci left: 7.808546e-01	ci right 7.835922e-01	k: 273779	n:350000
BMP1   350000 perm   137 sec   (2551 perm/sec)   p_kst 7.822257e-01   p_cons 9.742857e-04   p_joint 1.764000e-02

Joint ci ratio: 4.925651e-02	ci left: 1.686286e-02	ci right 1.771716e-02	k: 6223	n:360000
Cons ci ratio: 2.100322e-01	ci left: 8.651696e-04	ci right 1.070777e-03	k: 347	n:360000
KS ci ratio: 3.446579e-03	ci left: 7.809399e-01	ci right 7.836389e-01	k: 281625	n:360000
BMP1   360000 perm   143 sec   (2523 perm/sec)   p_kst 7.822917e-01   p_cons 9.638889e-04   p_joint 1.728611e-02

Joint ci ratio: 4.859749e-02	ci left: 1.686094e-02	ci right 1.770340e-02	k: 6393	n:370000
Cons ci ratio: 2.082457e-01	ci left: 8.571532e-04	ci right 1.058902e-03	k: 353	n:370000
KS ci ratio: 3.400626e-03	ci left: 7.808638e-01	ci right 7.835264e-01	k: 289413	n:370000
BMP1   370000 perm   148 sec   (2495 perm/sec)   p_kst 7.821973e-01   p_cons 9.540541e-04   p_joint 1.727838e-02

Joint ci ratio: 4.720873e-02	ci left: 1.740017e-02	ci right 1.824405e-02	k: 6771	n:380000
Cons ci ratio: 2.059322e-01	ci left: 8.545573e-04	ci right 1.053179e-03	k: 361	n:380000
KS ci ratio: 3.356593e-03	ci left: 7.807787e-01	ci right 7.834065e-01	k: 297196	n:380000
BMP1   380000 perm   154 sec   (2470 perm/sec)   p_kst 7.820947e-01   p_cons 9.500000e-04   p_joint 1.781842e-02

Joint ci ratio: 4.698374e-02	ci left: 1.712372e-02	ci right 1.795013e-02	k: 6838	n:390000
Cons ci ratio: 2.039702e-01	ci left: 8.496729e-04	ci right 1.045044e-03	k: 368	n:390000
KS ci ratio: 3.312755e-03	ci left: 7.808498e-01	ci right 7.834434e-01	k: 305038	n:390000
BMP1   390000 perm   160 sec   (2443 perm/sec)   p_kst 7.821487e-01   p_cons 9.435897e-04   p_joint 1.753333e-02

Joint ci ratio: 4.716642e-02	ci left: 1.657446e-02	ci right 1.737756e-02	k: 6789	n:400000
Cons ci ratio: 2.017949e-01	ci left: 8.474150e-04	ci right 1.039932e-03	k: 376	n:400000
KS ci ratio: 3.270351e-03	ci left: 7.809427e-01	ci right 7.835033e-01	k: 312890	n:400000
BMP1   400000 perm   165 sec   (2419 perm/sec)   p_kst 7.822250e-01   p_cons 9.400000e-04   p_joint 1.697250e-02

Joint ci ratio: 4.652227e-02	ci left: 1.662579e-02	ci right 1.742008e-02	k: 6978	n:410000
Cons ci ratio: 1.973916e-01	ci left: 8.661387e-04	ci right 1.058100e-03	k: 393	n:410000
KS ci ratio: 3.229720e-03	ci left: 7.810116e-01	ci right 7.835405e-01	k: 320734	n:410000
BMP1   410000 perm   171 sec   (2396 perm/sec)   p_kst 7.822780e-01   p_cons 9.585366e-04   p_joint 1.701951e-02

Joint ci ratio: 4.596254e-02	ci left: 1.663238e-02	ci right 1.741716e-02	k: 7149	n:420000
Cons ci ratio: 1.963985e-01	ci left: 8.545701e-04	ci right 1.042900e-03	k: 397	n:420000
KS ci ratio: 3.191525e-03	ci left: 7.809748e-01	ci right 7.834737e-01	k: 328535	n:420000
BMP1   420000 perm   177 sec   (2373 perm/sec)   p_kst 7.822262e-01   p_cons 9.452381e-04   p_joint 1.702143e-02

Joint ci ratio: 4.545414e-02	ci left: 1.661571e-02	ci right 1.739081e-02	k: 7310	n:430000
Cons ci ratio: 1.944542e-01	ci left: 8.523907e-04	ci right 1.038161e-03	k: 405	n:430000
KS ci ratio: 3.155213e-03	ci left: 7.808794e-01	ci right 7.833494e-01	k: 336310	n:430000
BMP1   430000 perm   183 sec   (2350 perm/sec)   p_kst 7.821163e-01   p_cons 9.418605e-04   p_joint 1.700000e-02

Joint ci ratio: 4.484637e-02	ci left: 1.668526e-02	ci right 1.745293e-02	k: 7509	n:440000
Cons ci ratio: 1.925666e-01	ci left: 8.503190e-04	ci right 1.033628e-03	k: 413	n:440000
KS ci ratio: 3.120591e-03	ci left: 7.807360e-01	ci right 7.831784e-01	k: 344062	n:440000
BMP1   440000 perm   189 sec   (2327 perm/sec)   p_kst 7.819591e-01   p_cons 9.386364e-04   p_joint 1.706591e-02

Joint ci ratio: 4.588160e-02	ci left: 1.559585e-02	ci right 1.633040e-02	k: 7182	n:450000
Cons ci ratio: 1.900579e-01	ci left: 8.546969e-04	ci right 1.036272e-03	k: 424	n:450000
KS ci ratio: 3.086841e-03	ci left: 7.806260e-01	ci right 7.830415e-01	k: 351826	n:450000
BMP1   450000 perm   195 sec   (2305 perm/sec)   p_kst 7.818356e-01   p_cons 9.422222e-04   p_joint 1.596000e-02

Joint ci ratio: 4.525387e-02	ci left: 1.568666e-02	ci right 1.641511e-02	k: 7382	n:460000
Cons ci ratio: 1.880770e-01	ci left: 8.547558e-04	ci right 1.034235e-03	k: 433	n:460000
KS ci ratio: 3.053072e-03	ci left: 7.806428e-01	ci right 7.830319e-01	k: 359646	n:460000
BMP1   460000 perm   202 sec   (2282 perm/sec)   p_kst 7.818391e-01   p_cons 9.413043e-04   p_joint 1.604783e-02

Joint ci ratio: 4.483786e-02	ci left: 1.564320e-02	ci right 1.636278e-02	k: 7520	n:470000
Cons ci ratio: 1.859469e-01	ci left: 8.568501e-04	ci right 1.034501e-03	k: 443	n:470000
KS ci ratio: 3.021254e-03	ci left: 7.805610e-01	ci right 7.829249e-01	k: 367420	n:470000
BMP1   470000 perm   208 sec   (2261 perm/sec)   p_kst 7.817447e-01   p_cons 9.425532e-04   p_joint 1.600000e-02

Joint ci ratio: 3.977350e-02	ci left: 1.944076e-02	ci right 2.023172e-02	k: 9520	n:480000
Cons ci ratio: 1.834834e-01	ci left: 8.628433e-04	ci right 1.039103e-03	k: 455	n:480000
KS ci ratio: 2.988676e-03	ci left: 7.806810e-01	ci right 7.830198e-01	k: 375289	n:480000
BMP1   480000 perm   214 sec   (2240 perm/sec)   p_kst 7.818521e-01   p_cons 9.479167e-04   p_joint 1.983333e-02

Joint ci ratio: 4.102282e-02	ci left: 1.791846e-02	ci right 1.867092e-02	k: 8963	n:490000
Cons ci ratio: 1.809220e-01	ci left: 8.705552e-04	ci right 1.045636e-03	k: 468	n:490000
KS ci ratio: 2.958137e-03	ci left: 7.806797e-01	ci right 7.829945e-01	k: 383101	n:490000
BMP1   490000 perm   221 sec   (2218 perm/sec)   p_kst 7.818388e-01   p_cons 9.551020e-04   p_joint 1.829184e-02

Joint ci ratio: 4.133197e-02	ci left: 1.730661e-02	ci right 1.803899e-02	k: 8835	n:500000
Cons ci ratio: 1.792107e-01	ci left: 8.703328e-04	ci right 1.043534e-03	k: 477	n:500000
KS ci ratio: 2.927692e-03	ci left: 7.807748e-01	ci right 7.830660e-01	k: 390961	n:500000
BMP1   500000 perm   228 sec   (2197 perm/sec)   p_kst 7.819220e-01   p_cons 9.540000e-04   p_joint 1.767000e-02

Joint ci ratio: 3.768388e-02	ci left: 2.038481e-02	ci right 2.116967e-02	k: 10595	n:510000
Cons ci ratio: 1.777299e-01	ci left: 8.682529e-04	ci right 1.039459e-03	k: 485	n:510000
KS ci ratio: 2.899101e-03	ci left: 7.807562e-01	ci right 7.830249e-01	k: 398765	n:510000
BMP1   510000 perm   234 sec   (2178 perm/sec)   p_kst 7.818922e-01   p_cons 9.509804e-04   p_joint 2.077451e-02

Joint ci ratio: 3.733524e-02	ci left: 2.037189e-02	ci right 2.114884e-02	k: 10794	n:520000
Cons ci ratio: 1.762852e-01	ci left: 8.662587e-04	ci right 1.035535e-03	k: 493	n:520000
KS ci ratio: 2.870910e-03	ci left: 7.807886e-01	ci right 7.830352e-01	k: 406595	n:520000
BMP1   520000 perm   241 sec   (2158 perm/sec)   p_kst 7.819135e-01   p_cons 9.480769e-04   p_joint 2.075769e-02

Joint ci ratio: 3.990117e-02	ci left: 1.752792e-02	ci right 1.824340e-02	k: 9478	n:530000
Cons ci ratio: 1.745275e-01	ci left: 8.679538e-04	ci right 1.035692e-03	k: 503	n:530000
KS ci ratio: 2.843982e-03	ci left: 7.807650e-01	ci right 7.829905e-01	k: 414396	n:530000
BMP1   530000 perm   248 sec   (2138 perm/sec)   p_kst 7.818792e-01   p_cons 9.490566e-04   p_joint 1.788302e-02

Joint ci ratio: 4.016747e-02	ci left: 1.698324e-02	ci right 1.768121e-02	k: 9358	n:540000
Cons ci ratio: 1.733284e-01	ci left: 8.642791e-04	ci right 1.030039e-03	k: 510	n:540000
KS ci ratio: 2.816575e-03	ci left: 7.808908e-01	ci right 7.830951e-01	k: 422277	n:540000
BMP1   540000 perm   255 sec   (2119 perm/sec)   p_kst 7.819944e-01   p_cons 9.444444e-04   p_joint 1.732963e-02

Joint ci ratio: 3.976735e-02	ci left: 1.701466e-02	ci right 1.770680e-02	k: 9547	n:550000
Cons ci ratio: 1.719875e-01	ci left: 8.624817e-04	ci right 1.026485e-03	k: 518	n:550000
KS ci ratio: 2.790077e-03	ci left: 7.809957e-01	ci right 7.831795e-01	k: 430149	n:550000
BMP1   550000 perm   262 sec   (2101 perm/sec)   p_kst 7.820891e-01   p_cons 9.418182e-04   p_joint 1.735818e-02

Joint ci ratio: 3.962820e-02	ci left: 1.683279e-02	ci right 1.751508e-02	k: 9616	n:560000
Cons ci ratio: 1.705155e-01	ci left: 8.624629e-04	ci right 1.024914e-03	k: 527	n:560000
KS ci ratio: 2.765066e-03	ci left: 7.810039e-01	ci right 7.831682e-01	k: 437969	n:560000
BMP1   560000 perm   269 sec   (2083 perm/sec)   p_kst 7.820875e-01   p_cons 9.410714e-04   p_joint 1.717143e-02

Joint ci ratio: 3.934604e-02	ci left: 1.677892e-02	ci right 1.745407e-02	k: 9755	n:570000
Cons ci ratio: 1.684538e-01	ci left: 8.691718e-04	ci right 1.030707e-03	k: 540	n:570000
KS ci ratio: 2.740886e-03	ci left: 7.809908e-01	ci right 7.831361e-01	k: 445777	n:570000
BMP1   570000 perm   276 sec   (2065 perm/sec)   p_kst 7.820649e-01   p_cons 9.473684e-04   p_joint 1.711404e-02

Joint ci ratio: 3.951291e-02	ci left: 1.635640e-02	ci right 1.701741e-02	k: 9677	n:580000
Cons ci ratio: 1.666157e-01	ci left: 8.740084e-04	ci right 1.034492e-03	k: 552	n:580000
KS ci ratio: 2.718153e-03	ci left: 7.808747e-01	ci right 7.830018e-01	k: 453525	n:580000
BMP1   580000 perm   283 sec   (2047 perm/sec)   p_kst 7.819397e-01   p_cons 9.517241e-04   p_joint 1.668448e-02

Joint ci ratio: 3.976155e-02	ci left: 1.588443e-02	ci right 1.653050e-02	k: 9561	n:590000
Cons ci ratio: 1.652763e-01	ci left: 8.738155e-04	ci right 1.032845e-03	k: 561	n:590000
KS ci ratio: 2.695092e-03	ci left: 7.808746e-01	ci right 7.829836e-01	k: 461339	n:590000
BMP1   590000 perm   291 sec   (2029 perm/sec)   p_kst 7.819305e-01   p_cons 9.508475e-04   p_joint 1.620508e-02

Joint ci ratio: 3.940218e-02	ci left: 1.590848e-02	ci right 1.654954e-02	k: 9736	n:600000
Cons ci ratio: 1.635392e-01	ci left: 8.784291e-04	ci right 1.036453e-03	k: 573	n:600000
KS ci ratio: 2.672869e-03	ci left: 7.808412e-01	ci right 7.829327e-01	k: 469133	n:600000
BMP1   600000 perm   298 sec   (2012 perm/sec)   p_kst 7.818883e-01   p_cons 9.550000e-04   p_joint 1.622667e-02

Joint ci ratio: 3.934596e-02	ci left: 1.569634e-02	ci right 1.632794e-02	k: 9766	n:610000
Cons ci ratio: 1.625514e-01	ci left: 8.750357e-04	ci right 1.031406e-03	k: 580	n:610000
KS ci ratio: 2.651607e-03	ci left: 7.807548e-01	ci right 7.828294e-01	k: 476894	n:610000
BMP1   610000 perm   306 sec   (1996 perm/sec)   p_kst 7.817934e-01   p_cons 9.508197e-04   p_joint 1.600984e-02

Joint ci ratio: 3.905559e-02	ci left: 1.567635e-02	ci right 1.630238e-02	k: 9912	n:620000
Cons ci ratio: 1.613069e-01	ci left: 8.748501e-04	ci right 1.029874e-03	k: 589	n:620000
KS ci ratio: 2.629974e-03	ci left: 7.807843e-01	ci right 7.828421e-01	k: 484725	n:620000
BMP1   620000 perm   313 sec   (1979 perm/sec)   p_kst 7.818145e-01   p_cons 9.500000e-04   p_joint 1.598710e-02

Joint ci ratio: 3.751760e-02	ci left: 1.671367e-02	ci right 1.735427e-02	k: 10730	n:630000
Cons ci ratio: 1.600906e-01	ci left: 8.746748e-04	ci right 1.028386e-03	k: 598	n:630000
KS ci ratio: 2.609553e-03	ci left: 7.807224e-01	ci right 7.827639e-01	k: 492499	n:630000
BMP1   630000 perm   321 sec   (1963 perm/sec)   p_kst 7.817444e-01   p_cons 9.492063e-04   p_joint 1.703175e-02

Joint ci ratio: 3.481271e-02	ci left: 1.908827e-02	ci right 1.976609e-02	k: 12432	n:640000
Cons ci ratio: 1.590323e-01	ci left: 8.730089e-04	ci right 1.025317e-03	k: 606	n:640000
KS ci ratio: 2.588878e-03	ci left: 7.807579e-01	ci right 7.827833e-01	k: 500334	n:640000
BMP1   640000 perm   329 sec   (1946 perm/sec)   p_kst 7.817719e-01   p_cons 9.468750e-04   p_joint 1.942500e-02

Joint ci ratio: 3.454425e-02	ci left: 1.909048e-02	ci right 1.976305e-02	k: 12626	n:650000
Cons ci ratio: 1.576104e-01	ci left: 8.758307e-04	ci right 1.027135e-03	k: 617	n:650000
KS ci ratio: 2.569010e-03	ci left: 7.807492e-01	ci right 7.827590e-01	k: 508141	n:650000
BMP1   650000 perm   337 sec   (1929 perm/sec)   p_kst 7.817554e-01   p_cons 9.492308e-04   p_joint 1.942462e-02

Joint ci ratio: 3.417604e-02	ci left: 1.920983e-02	ci right 1.987925e-02	k: 12898	n:660000
Cons ci ratio: 1.568513e-01	ci left: 8.712936e-04	ci right 1.021021e-03	k: 623	n:660000
KS ci ratio: 2.549921e-03	ci left: 7.806968e-01	ci right 7.826916e-01	k: 515919	n:660000
BMP1   660000 perm   345 sec   (1914 perm/sec)   p_kst 7.816955e-01   p_cons 9.439394e-04   p_joint 1.954242e-02

Joint ci ratio: 3.392591e-02	ci left: 1.920576e-02	ci right 1.987004e-02	k: 13089	n:670000
Cons ci ratio: 1.559791e-01	ci left: 8.683279e-04	ci right 1.016639e-03	k: 630	n:670000
KS ci ratio: 2.530566e-03	ci left: 7.807388e-01	ci right 7.827185e-01	k: 523759	n:670000
BMP1   670000 perm   353 sec   (1898 perm/sec)   p_kst 7.817299e-01   p_cons 9.402985e-04   p_joint 1.953582e-02

Joint ci ratio: 3.385842e-02	ci left: 1.900349e-02	ci right 1.965944e-02	k: 13144	n:680000
Cons ci ratio: 1.547576e-01	ci left: 8.696926e-04	ci right 1.016965e-03	k: 640	n:680000
KS ci ratio: 2.512044e-03	ci left: 7.807251e-01	ci right 7.826902e-01	k: 531562	n:680000
BMP1   680000 perm   361 sec   (1882 perm/sec)   p_kst 7.817088e-01   p_cons 9.411765e-04   p_joint 1.932941e-02

Joint ci ratio: 3.358434e-02	ci left: 1.903705e-02	ci right 1.968874e-02	k: 13359	n:690000
Cons ci ratio: 1.532114e-01	ci left: 8.752032e-04	ci right 1.021792e-03	k: 653	n:690000
KS ci ratio: 2.493310e-03	ci left: 7.807960e-01	ci right 7.827466e-01	k: 539423	n:690000
BMP1   690000 perm   369 sec   (1868 perm/sec)   p_kst 7.817725e-01   p_cons 9.463768e-04   p_joint 1.936087e-02

Joint ci ratio: 3.314788e-02	ci left: 1.926237e-02	ci right 1.991304e-02	k: 13710	n:700000
Cons ci ratio: 1.520532e-01	ci left: 8.764404e-04	ci right 1.022026e-03	k: 663	n:700000
KS ci ratio: 2.475713e-03	ci left: 7.807647e-01	ci right 7.827015e-01	k: 547214	n:700000
BMP1   700000 perm   378 sec   (1854 perm/sec)   p_kst 7.817343e-01   p_cons 9.471429e-04   p_joint 1.958571e-02

Joint ci ratio: 3.197738e-02	ci left: 2.039523e-02	ci right 2.105940e-02	k: 14715	n:710000
Cons ci ratio: 1.512583e-01	ci left: 8.735811e-04	ci right 1.017865e-03	k: 670	n:710000
KS ci ratio: 2.468100e-03	ci left: 7.793971e-01	ci right 7.813245e-01	k: 554057	n:710000
BMP1   710000 perm   386 sec   (1838 perm/sec)   p_kst 7.803620e-01   p_cons 9.436620e-04   p_joint 2.072535e-02

Joint ci ratio: 3.175265e-02	ci left: 2.039993e-02	ci right 2.105949e-02	k: 14924	n:720000
Cons ci ratio: 1.502540e-01	ci left: 8.734765e-04	ci right 1.016699e-03	k: 679	n:720000
KS ci ratio: 2.450648e-03	ci left: 7.794392e-01	ci right 7.813530e-01	k: 561886	n:720000
BMP1   720000 perm   395 sec   (1824 perm/sec)   p_kst 7.803972e-01   p_cons 9.430556e-04   p_joint 2.072778e-02

Joint ci ratio: 3.153579e-02	ci left: 2.040043e-02	ci right 2.105543e-02	k: 15130	n:730000
Cons ci ratio: 1.495959e-01	ci left: 8.694218e-04	ci right 1.011299e-03	k: 685	n:730000
KS ci ratio: 2.433853e-03	ci left: 7.794390e-01	ci right 7.813396e-01	k: 569685	n:730000
BMP1   730000 perm   403 sec   (1810 perm/sec)   p_kst 7.803904e-01   p_cons 9.383562e-04   p_joint 2.072603e-02

Joint ci ratio: 3.385009e-02	ci left: 1.749861e-02	ci right 1.810247e-02	k: 13171	n:740000
Cons ci ratio: 1.485172e-01	ci left: 8.706824e-04	ci right 1.011650e-03	k: 695	n:740000
KS ci ratio: 2.417761e-03	ci left: 7.793873e-01	ci right 7.812753e-01	k: 577446	n:740000
BMP1   740000 perm   412 sec   (1795 perm/sec)   p_kst 7.803324e-01   p_cons 9.391892e-04   p_joint 1.779865e-02

Joint ci ratio: 3.271474e-02	ci left: 1.847662e-02	ci right 1.909244e-02	k: 14087	n:750000
Cons ci ratio: 1.477762e-01	ci left: 8.680606e-04	ci right 1.007840e-03	k: 702	n:750000
KS ci ratio: 2.400742e-03	ci left: 7.795148e-01	ci right 7.813897e-01	k: 585340	n:750000
BMP1   750000 perm   421 sec   (1782 perm/sec)   p_kst 7.804533e-01   p_cons 9.360000e-04   p_joint 1.878267e-02

Joint ci ratio: 3.252649e-02	ci left: 1.844753e-02	ci right 1.905878e-02	k: 14251	n:760000
Cons ci ratio: 1.469426e-01	ci left: 8.667769e-04	ci right 1.005493e-03	k: 710	n:760000
KS ci ratio: 2.384644e-03	ci left: 7.795572e-01	ci right 7.814196e-01	k: 593172	n:760000
BMP1   760000 perm   430 sec   (1769 perm/sec)   p_kst 7.804895e-01   p_cons 9.342105e-04   p_joint 1.875132e-02

Joint ci ratio: 3.246097e-02	ci left: 1.828522e-02	ci right 1.888984e-02	k: 14311	n:770000
Cons ci ratio: 1.453160e-01	ci left: 8.755398e-04	ci right 1.013973e-03	k: 726	n:770000
KS ci ratio: 2.369359e-03	ci left: 7.795270e-01	ci right 7.813774e-01	k: 600949	n:770000
BMP1   770000 perm   439 sec   (1755 perm/sec)   p_kst 7.804532e-01   p_cons 9.428571e-04   p_joint 1.858571e-02

Joint ci ratio: 3.295864e-02	ci left: 1.751916e-02	ci right 1.810750e-02	k: 13893	n:780000
Cons ci ratio: 1.447204e-01	ci left: 8.717280e-04	ci right 1.008945e-03	k: 732	n:780000
KS ci ratio: 2.354531e-03	ci left: 7.794732e-01	ci right 7.813119e-01	k: 608707	n:780000
BMP1   780000 perm   448 sec   (1742 perm/sec)   p_kst 7.803936e-01   p_cons 9.384615e-04   p_joint 1.781154e-02

Joint ci ratio: 3.272586e-02	ci left: 1.754598e-02	ci right 1.813098e-02	k: 14091	n:790000
Cons ci ratio: 1.435499e-01	ci left: 8.753357e-04	ci right 1.011911e-03	k: 744	n:790000
KS ci ratio: 2.339426e-03	ci left: 7.795019e-01	ci right 7.813289e-01	k: 616529	n:790000
BMP1   790000 perm   457 sec   (1729 perm/sec)   p_kst 7.804165e-01   p_cons 9.417722e-04   p_joint 1.783671e-02

Joint ci ratio: 3.303635e-02	ci left: 1.700921e-02	ci right 1.758180e-02	k: 13835	n:800000
Cons ci ratio: 1.424073e-01	ci left: 8.788576e-04	ci right 1.014798e-03	k: 756	n:800000
KS ci ratio: 2.325040e-03	ci left: 7.794662e-01	ci right 7.812818e-01	k: 624300	n:800000
BMP1   800000 perm   466 sec   (1717 perm/sec)   p_kst 7.803750e-01   p_cons 9.450000e-04   p_joint 1.729375e-02

Joint ci ratio: 3.340534e-02	ci left: 1.643674e-02	ci right 1.699635e-02	k: 13539	n:810000
Cons ci ratio: 1.414759e-01	ci left: 8.799147e-04	ci right 1.015053e-03	k: 766	n:810000
KS ci ratio: 2.310283e-03	ci left: 7.795253e-01	ci right 7.813295e-01	k: 632147	n:810000
BMP1   810000 perm   475 sec   (1705 perm/sec)   p_kst 7.804284e-01   p_cons 9.456790e-04   p_joint 1.671481e-02

Joint ci ratio: 3.282691e-02	ci left: 1.681203e-02	ci right 1.737432e-02	k: 14015	n:820000
Cons ci ratio: 1.407439e-01	ci left: 8.785957e-04	ci right 1.012775e-03	k: 774	n:820000
KS ci ratio: 2.296367e-03	ci left: 7.794987e-01	ci right 7.812920e-01	k: 639925	n:820000
BMP1   820000 perm   484 sec   (1693 perm/sec)   p_kst 7.803963e-01   p_cons 9.439024e-04   p_joint 1.709146e-02

Joint ci ratio: 3.245090e-02	ci left: 1.699667e-02	ci right 1.755851e-02	k: 14339	n:830000
Cons ci ratio: 1.397555e-01	ci left: 8.807983e-04	ci right 1.014290e-03	k: 785	n:830000
KS ci ratio: 2.282492e-03	ci left: 7.795042e-01	ci right 7.812866e-01	k: 647729	n:830000
BMP1   830000 perm   494 sec   (1682 perm/sec)   p_kst 7.803964e-01   p_cons 9.457831e-04   p_joint 1.727590e-02

Joint ci ratio: 3.240147e-02	ci left: 1.684863e-02	ci right 1.740471e-02	k: 14385	n:840000
Cons ci ratio: 1.381815e-01	ci left: 8.909964e-04	ci right 1.024388e-03	k: 803	n:840000
KS ci ratio: 2.268691e-03	ci left: 7.795358e-01	ci right 7.813075e-01	k: 655555	n:840000
BMP1   840000 perm   503 sec   (1670 perm/sec)   p_kst 7.804226e-01   p_cons 9.559524e-04   p_joint 1.712500e-02

Joint ci ratio: 3.145297e-02	ci left: 1.766355e-02	ci right 1.822915e-02	k: 15253	n:850000
Cons ci ratio: 1.375841e-01	ci left: 8.884653e-04	ci right 1.020856e-03	k: 810	n:850000
KS ci ratio: 2.255091e-03	ci left: 7.795738e-01	ci right 7.813349e-01	k: 663387	n:850000
BMP1   850000 perm   514 sec   (1654 perm/sec)   p_kst 7.804553e-01   p_cons 9.529412e-04   p_joint 1.794471e-02

Joint ci ratio: 3.095195e-02	ci left: 1.802584e-02	ci right 1.859369e-02	k: 15745	n:860000
Cons ci ratio: 1.366603e-01	ci left: 8.904862e-04	ci right 1.022215e-03	k: 821	n:860000
KS ci ratio: 2.242053e-03	ci left: 7.795620e-01	ci right 7.813129e-01	k: 671177	n:860000
BMP1   860000 perm   524 sec   (1640 perm/sec)   p_kst 7.804384e-01   p_cons 9.546512e-04   p_joint 1.830814e-02

Joint ci ratio: 3.045863e-02	ci left: 1.839813e-02	ci right 1.896830e-02	k: 16253	n:870000
Cons ci ratio: 1.355108e-01	ci left: 8.957950e-04	ci right 1.027104e-03	k: 835	n:870000
KS ci ratio: 2.229140e-03	ci left: 7.795654e-01	ci right 7.813063e-01	k: 678980	n:870000
BMP1   870000 perm   535 sec   (1627 perm/sec)   p_kst 7.804368e-01   p_cons 9.597701e-04   p_joint 1.868161e-02

Joint ci ratio: 3.028116e-02	ci left: 1.840445e-02	ci right 1.897145e-02	k: 16444	n:880000
Cons ci ratio: 1.345484e-01	ci left: 8.987914e-04	ci right 1.029529e-03	k: 847	n:880000
KS ci ratio: 2.216368e-03	ci left: 7.795814e-01	ci right 7.813122e-01	k: 686794	n:880000
BMP1   880000 perm   545 sec   (1615 perm/sec)   p_kst 7.804477e-01   p_cons 9.625000e-04   p_joint 1.868636e-02

Joint ci ratio: 3.010860e-02	ci left: 1.840842e-02	ci right 1.897225e-02	k: 16633	n:890000
Cons ci ratio: 1.336840e-01	ci left: 9.006375e-04	ci right 1.030735e-03	k: 858	n:890000
KS ci ratio: 2.204094e-03	ci left: 7.795531e-01	ci right 7.812743e-01	k: 694569	n:890000
BMP1   890000 perm   555 sec   (1604 perm/sec)   p_kst 7.804146e-01   p_cons 9.640449e-04   p_joint 1.868876e-02

Joint ci ratio: 2.992356e-02	ci left: 1.843106e-02	ci right 1.899205e-02	k: 16839	n:900000
Cons ci ratio: 1.329126e-01	ci left: 9.013710e-04	ci right 1.030764e-03	k: 868	n:900000
KS ci ratio: 2.192278e-03	ci left: 7.794854e-01	ci right 7.811972e-01	k: 702308	n:900000
BMP1   900000 perm   565 sec   (1592 perm/sec)   p_kst 7.803422e-01   p_cons 9.644444e-04   p_joint 1.871000e-02

Joint ci ratio: 2.975167e-02	ci left: 1.844121e-02	ci right 1.899923e-02	k: 17034	n:910000
Cons ci ratio: 1.317052e-01	ci left: 9.084665e-04	ci right 1.037601e-03	k: 884	n:910000
KS ci ratio: 2.180216e-03	ci left: 7.794875e-01	ci right 7.811899e-01	k: 710109	n:910000
BMP1   910000 perm   576 sec   (1581 perm/sec)   p_kst 7.803396e-01   p_cons 9.714286e-04   p_joint 1.871868e-02

Joint ci ratio: 2.988911e-02	ci left: 1.807888e-02	ci right 1.862851e-02	k: 16884	n:920000
Cons ci ratio: 1.309673e-01	ci left: 9.091043e-04	ci right 1.037549e-03	k: 894	n:920000
KS ci ratio: 2.168227e-03	ci left: 7.795091e-01	ci right 7.812022e-01	k: 717928	n:920000
BMP1   920000 perm   586 sec   (1571 perm/sec)   p_kst 7.803565e-01   p_cons 9.717391e-04   p_joint 1.835217e-02

Joint ci ratio: 3.010712e-02	ci left: 1.763256e-02	ci right 1.817260e-02	k: 16648	n:930000
Cons ci ratio: 1.303138e-01	ci left: 9.086902e-04	ci right 1.036386e-03	k: 903	n:930000
KS ci ratio: 2.156969e-03	ci left: 7.794452e-01	ci right 7.811293e-01	k: 725668	n:930000
BMP1   930000 perm   596 sec   (1560 perm/sec)   p_kst 7.802882e-01   p_cons 9.709677e-04   p_joint 1.790108e-02

Joint ci ratio: 2.994203e-02	ci left: 1.763926e-02	ci right 1.817649e-02	k: 16832	n:940000
Cons ci ratio: 1.295280e-01	ci left: 9.103451e-04	ci right 1.037443e-03	k: 914	n:940000
KS ci ratio: 2.145617e-03	ci left: 7.794254e-01	ci right 7.811006e-01	k: 733448	n:940000
BMP1   940000 perm   606 sec   (1550 perm/sec)   p_kst 7.802638e-01   p_cons 9.723404e-04   p_joint 1.790638e-02

Joint ci ratio: 2.939158e-02	ci left: 1.810979e-02	ci right 1.865104e-02	k: 17460	n:950000
Cons ci ratio: 1.289656e-01	ci left: 9.089112e-04	ci right 1.035216e-03	k: 922	n:950000
KS ci ratio: 2.134273e-03	ci left: 7.794334e-01	ci right 7.810997e-01	k: 741254	n:950000
BMP1   950000 perm   617 sec   (1539 perm/sec)   p_kst 7.802674e-01   p_cons 9.705263e-04   p_joint 1.837895e-02

Joint ci ratio: 2.924807e-02	ci left: 1.809900e-02	ci right 1.863724e-02	k: 17632	n:960000
Cons ci ratio: 1.287570e-01	ci left: 9.024675e-04	ci right 1.027658e-03	k: 925	n:960000
KS ci ratio: 2.123177e-03	ci left: 7.794297e-01	ci right 7.810873e-01	k: 749049	n:960000
BMP1   960000 perm   628 sec   (1529 perm/sec)   p_kst 7.802594e-01   p_cons 9.635417e-04   p_joint 1.836667e-02

Joint ci ratio: 2.909997e-02	ci left: 1.809663e-02	ci right 1.863203e-02	k: 17812	n:970000
Cons ci ratio: 1.282732e-01	ci left: 9.001481e-04	ci right 1.024512e-03	k: 932	n:970000
KS ci ratio: 2.112672e-03	ci left: 7.793580e-01	ci right 7.810073e-01	k: 756778	n:970000
BMP1   970000 perm   638 sec   (1520 perm/sec)   p_kst 7.801835e-01   p_cons 9.608247e-04   p_joint 1.836289e-02

Joint ci ratio: 2.933933e-02	ci left: 1.762727e-02	ci right 1.815314e-02	k: 17531	n:980000
Cons ci ratio: 1.273213e-01	ci left: 9.047921e-04	ci right 1.028800e-03	k: 946	n:980000
KS ci ratio: 2.102227e-03	ci left: 7.793032e-01	ci right 7.809442e-01	k: 764522	n:980000
BMP1   980000 perm   649 sec   (1510 perm/sec)   p_kst 7.801245e-01   p_cons 9.653061e-04   p_joint 1.788878e-02

Joint ci ratio: 2.918650e-02	ci left: 1.763371e-02	ci right 1.815699e-02	k: 17715	n:990000
Cons ci ratio: 1.263902e-01	ci left: 9.093456e-04	ci right 1.032998e-03	k: 960	n:990000
KS ci ratio: 2.091954e-03	ci left: 7.792464e-01	ci right 7.808792e-01	k: 772263	n:990000
BMP1   990000 perm   660 sec   (1500 perm/sec)   p_kst 7.800636e-01   p_cons 9.696970e-04   p_joint 1.789394e-02

Joint ci ratio: 2.904925e-02	ci left: 1.762415e-02	ci right 1.814465e-02	k: 17883	n:1000000
Cons ci ratio: 1.257376e-01	ci left: 9.099368e-04	ci right 1.032983e-03	k: 970	n:1000000
KS ci ratio: 2.081829e-03	ci left: 7.791908e-01	ci right 7.808156e-01	k: 780004	n:1000000
BMP1   1000000 perm   671 sec   (1490 perm/sec)   p_kst 7.800040e-01   p_cons 9.700000e-04   p_joint 1.788300e-02

Joint ci ratio: 2.888786e-02	ci left: 1.764624e-02	ci right 1.816445e-02	k: 18083	n:1010000
Cons ci ratio: 1.247772e-01	ci left: 9.153138e-04	ci right 1.038072e-03	k: 985	n:1010000
KS ci ratio: 2.071641e-03	ci left: 7.791710e-01	ci right 7.807878e-01	k: 787780	n:1010000
BMP1   1010000 perm   682 sec   (1481 perm/sec)   p_kst 7.799802e-01   p_cons 9.752475e-04   p_joint 1.790396e-02

Joint ci ratio: 2.834865e-02	ci left: 1.814007e-02	ci right 1.866267e-02	k: 18768	n:1020000
Cons ci ratio: 1.239625e-01	ci left: 9.186888e-04	ci right 1.041036e-03	k: 998	n:1020000
KS ci ratio: 2.061154e-03	ci left: 7.792262e-01	ci right 7.808349e-01	k: 795632	n:1020000
BMP1   1020000 perm   694 sec   (1469 perm/sec)   p_kst 7.800314e-01   p_cons 9.784314e-04   p_joint 1.840000e-02

Joint ci ratio: 2.799998e-02	ci left: 1.841226e-02	ci right 1.893608e-02	k: 19233	n:1030000
Cons ci ratio: 1.234079e-01	ci left: 9.182370e-04	ci right 1.039937e-03	k: 1007	n:1030000
KS ci ratio: 2.051294e-03	ci left: 7.792016e-01	ci right 7.808026e-01	k: 803403	n:1030000
BMP1   1030000 perm   706 sec   (1459 perm/sec)   p_kst 7.800029e-01   p_cons 9.776699e-04   p_joint 1.867282e-02

Joint ci ratio: 2.786266e-02	ci left: 1.841664e-02	ci right 1.893797e-02	k: 19423	n:1040000
Cons ci ratio: 1.226797e-01	ci left: 9.205912e-04	ci right 1.041831e-03	k: 1019	n:1040000
KS ci ratio: 2.041065e-03	ci left: 7.792633e-01	ci right 7.808563e-01	k: 811263	n:1040000
BMP1   1040000 perm   717 sec   (1450 perm/sec)   p_kst 7.800606e-01   p_cons 9.798077e-04   p_joint 1.867596e-02

Joint ci ratio: 2.773094e-02	ci left: 1.841621e-02	ci right 1.893502e-02	k: 19608	n:1050000
Cons ci ratio: 1.223804e-01	ci left: 9.164395e-04	ci right 1.036817e-03	k: 1024	n:1050000
KS ci ratio: 2.031484e-03	ci left: 7.792398e-01	ci right 7.808253e-01	k: 819035	n:1050000
BMP1   1050000 perm   729 sec   (1441 perm/sec)   p_kst 7.800333e-01   p_cons 9.752381e-04   p_joint 1.867429e-02

Joint ci ratio: 2.758970e-02	ci left: 1.843078e-02	ci right 1.894732e-02	k: 19809	n:1060000
Cons ci ratio: 1.214359e-01	ci left: 9.224281e-04	ci right 1.042590e-03	k: 1040	n:1060000
KS ci ratio: 2.021925e-03	ci left: 7.792357e-01	ci right 7.808137e-01	k: 826827	n:1060000
BMP1   1060000 perm   740 sec   (1432 perm/sec)   p_kst 7.800255e-01   p_cons 9.811321e-04   p_joint 1.868774e-02

Joint ci ratio: 2.667837e-02	ci left: 1.951458e-02	ci right 2.004316e-02	k: 21162	n:1070000
Cons ci ratio: 1.206272e-01	ci left: 9.264953e-04	ci right 1.046326e-03	k: 1054	n:1070000
KS ci ratio: 2.012620e-03	ci left: 7.792111e-01	ci right 7.807818e-01	k: 834597	n:1070000
BMP1   1070000 perm   752 sec   (1424 perm/sec)   p_kst 7.799972e-01   p_cons 9.850467e-04   p_joint 1.977757e-02

Joint ci ratio: 2.697752e-02	ci left: 1.891626e-02	ci right 1.943447e-02	k: 20708	n:1080000
Cons ci ratio: 1.198345e-01	ci left: 9.304899e-04	ci right 1.049990e-03	k: 1068	n:1080000
KS ci ratio: 2.003227e-03	ci left: 7.792240e-01	ci right 7.807874e-01	k: 842407	n:1080000
BMP1   1080000 perm   763 sec   (1415 perm/sec)   p_kst 7.800065e-01   p_cons 9.888889e-04   p_joint 1.917407e-02

Joint ci ratio: 2.634323e-02	ci left: 1.964775e-02	ci right 2.017315e-02	k: 21701	n:1090000
Cons ci ratio: 1.194999e-01	ci left: 9.272930e-04	ci right 1.046027e-03	k: 1074	n:1090000
KS ci ratio: 1.994107e-03	ci left: 7.792119e-01	ci right 7.807682e-01	k: 850190	n:1090000
BMP1   1090000 perm   775 sec   (1407 perm/sec)   p_kst 7.799908e-01   p_cons 9.853211e-04   p_joint 1.990917e-02

Joint ci ratio: 2.622144e-02	ci left: 1.965157e-02	ci right 2.017460e-02	k: 21903	n:1100000
Cons ci ratio: 1.190028e-01	ci left: 9.268008e-04	ci right 1.044943e-03	k: 1083	n:1100000
KS ci ratio: 1.985048e-03	ci left: 7.792110e-01	ci right 7.807602e-01	k: 857985	n:1100000
BMP1   1100000 perm   787 sec   (1397 perm/sec)   p_kst 7.799864e-01   p_cons 9.845455e-04   p_joint 1.991182e-02

Joint ci ratio: 2.609531e-02	ci left: 1.966427e-02	ci right 2.018509e-02	k: 22115	n:1110000
Cons ci ratio: 1.184576e-01	ci left: 9.271927e-04	ci right 1.044806e-03	k: 1093	n:1110000
KS ci ratio: 1.976210e-03	ci left: 7.791930e-01	ci right 7.807353e-01	k: 865761	n:1110000
BMP1   1110000 perm   799 sec   (1389 perm/sec)   p_kst 7.799649e-01   p_cons 9.846847e-04   p_joint 1.992342e-02

Joint ci ratio: 2.599950e-02	ci left: 1.963417e-02	ci right 2.015225e-02	k: 22279	n:1120000
Cons ci ratio: 1.182959e-01	ci left: 9.215133e-04	ci right 1.038235e-03	k: 1096	n:1120000
KS ci ratio: 1.967607e-03	ci left: 7.791548e-01	ci right 7.806902e-01	k: 873514	n:1120000
BMP1   1120000 perm   812 sec   (1379 perm/sec)   p_kst 7.799232e-01   p_cons 9.785714e-04   p_joint 1.989196e-02

Joint ci ratio: 2.587594e-02	ci left: 1.964769e-02	ci right 2.016363e-02	k: 22492	n:1130000
Cons ci ratio: 1.176010e-01	ci left: 9.245234e-04	ci right 1.040891e-03	k: 1109	n:1130000
KS ci ratio: 1.959120e-03	ci left: 7.791163e-01	ci right 7.806451e-01	k: 881266	n:1130000
BMP1   1130000 perm   824 sec   (1372 perm/sec)   p_kst 7.798814e-01   p_cons 9.814159e-04   p_joint 1.990442e-02

Joint ci ratio: 2.575182e-02	ci left: 1.966447e-02	ci right 2.017833e-02	k: 22709	n:1140000
Cons ci ratio: 1.171796e-01	ci left: 9.232250e-04	ci right 1.038984e-03	k: 1117	n:1140000
KS ci ratio: 1.950208e-03	ci left: 7.791726e-01	ci right 7.806944e-01	k: 889125	n:1140000
BMP1   1140000 perm   836 sec   (1364 perm/sec)   p_kst 7.799342e-01   p_cons 9.798246e-04   p_joint 1.992018e-02

Joint ci ratio: 2.564830e-02	ci left: 1.965244e-02	ci right 2.016389e-02	k: 22893	n:1150000
Cons ci ratio: 1.166590e-01	ci left: 9.236384e-04	ci right 1.038899e-03	k: 1127	n:1150000
KS ci ratio: 1.942017e-03	ci left: 7.791216e-01	ci right 7.806370e-01	k: 896862	n:1150000
BMP1   1150000 perm   848 sec   (1356 perm/sec)   p_kst 7.798800e-01   p_cons 9.800000e-04   p_joint 1.990696e-02

Joint ci ratio: 2.552008e-02	ci left: 1.968003e-02	ci right 2.018961e-02	k: 23123	n:1160000
Cons ci ratio: 1.160433e-01	ci left: 9.257198e-04	ci right 1.040588e-03	k: 1139	n:1160000
KS ci ratio: 1.933584e-03	ci left: 7.791328e-01	ci right 7.806416e-01	k: 904670	n:1160000
BMP1   1160000 perm   860 sec   (1349 perm/sec)   p_kst 7.798879e-01   p_cons 9.818966e-04   p_joint 1.993362e-02

Joint ci ratio: 2.541375e-02	ci left: 1.967658e-02	ci right 2.018392e-02	k: 23317	n:1170000
Cons ci ratio: 1.152371e-01	ci left: 9.310874e-04	ci right 1.045765e-03	k: 1155	n:1170000
KS ci ratio: 1.925455e-03	ci left: 7.791088e-01	ci right 7.806112e-01	k: 912437	n:1170000
BMP1   1170000 perm   872 sec   (1341 perm/sec)   p_kst 7.798607e-01   p_cons 9.871795e-04   p_joint 1.992906e-02

Joint ci ratio: 2.531479e-02	ci left: 1.966393e-02	ci right 2.016894e-02	k: 23500	n:1180000
Cons ci ratio: 1.147419e-01	ci left: 9.314277e-04	ci right 1.045621e-03	k: 1165	n:1180000
KS ci ratio: 1.917225e-03	ci left: 7.791216e-01	ci right 7.806177e-01	k: 920247	n:1180000
BMP1   1180000 perm   885 sec   (1334 perm/sec)   p_kst 7.798703e-01   p_cons 9.872881e-04   p_joint 1.991525e-02

Joint ci ratio: 2.520883e-02	ci left: 1.966403e-02	ci right 2.016689e-02	k: 23698	n:1190000
Cons ci ratio: 1.142044e-01	ci left: 9.325796e-04	ci right 1.046342e-03	k: 1176	n:1190000
KS ci ratio: 1.908932e-03	ci left: 7.791646e-01	ci right 7.806542e-01	k: 928093	n:1190000
BMP1   1190000 perm   897 sec   (1327 perm/sec)   p_kst 7.799101e-01   p_cons 9.882353e-04   p_joint 1.991429e-02

Joint ci ratio: 2.508332e-02	ci left: 1.969642e-02	ci right 2.019757e-02	k: 23935	n:1200000
Cons ci ratio: 1.136744e-01	ci left: 9.337136e-04	ci right 1.047050e-03	k: 1187	n:1200000
KS ci ratio: 1.901179e-03	ci left: 7.791284e-01	ci right 7.806119e-01	k: 935845	n:1200000
BMP1   1200000 perm   909 sec   (1320 perm/sec)   p_kst 7.798708e-01   p_cons 9.891667e-04   p_joint 1.994583e-02

Joint ci ratio: 2.498604e-02	ci left: 1.968722e-02	ci right 2.018616e-02	k: 24122	n:1210000
Cons ci ratio: 1.133411e-01	ci left: 9.316178e-04	ci right 1.044347e-03	k: 1194	n:1210000
KS ci ratio: 1.893145e-03	ci left: 7.791607e-01	ci right 7.806380e-01	k: 943679	n:1210000
BMP1   1210000 perm   922 sec   (1313 perm/sec)   p_kst 7.799000e-01   p_cons 9.867769e-04   p_joint 1.993554e-02

Joint ci ratio: 2.472179e-02	ci left: 1.994294e-02	ci right 2.044294e-02	k: 24634	n:1220000
Cons ci ratio: 1.127762e-01	ci left: 9.335395e-04	ci right 1.045900e-03	k: 1206	n:1220000
KS ci ratio: 1.885371e-03	ci left: 7.791637e-01	ci right 7.806349e-01	k: 951478	n:1220000
BMP1   1220000 perm   934 sec   (1306 perm/sec)   p_kst 7.799000e-01   p_cons 9.885246e-04   p_joint 2.019180e-02

Joint ci ratio: 2.479328e-02	ci left: 1.967170e-02	ci right 2.016634e-02	k: 24499	n:1230000
Cons ci ratio: 1.123119e-01	ci left: 9.338510e-04	ci right 1.045756e-03	k: 1216	n:1230000
KS ci ratio: 1.877620e-03	ci left: 7.791798e-01	ci right 7.806449e-01	k: 959293	n:1230000
BMP1   1230000 perm   947 sec   (1298 perm/sec)   p_kst 7.799130e-01   p_cons 9.886179e-04   p_joint 1.991789e-02

Joint ci ratio: 2.446228e-02	ci left: 2.004048e-02	ci right 2.053757e-02	k: 25157	n:1240000
Cons ci ratio: 1.118989e-01	ci left: 9.333745e-04	ci right 1.044784e-03	k: 1225	n:1240000
KS ci ratio: 1.870126e-03	ci left: 7.791657e-01	ci right 7.806250e-01	k: 967071	n:1240000
BMP1   1240000 perm   960 sec   (1292 perm/sec)   p_kst 7.798960e-01   p_cons 9.879032e-04   p_joint 2.028790e-02

Joint ci ratio: 2.492420e-02	ci left: 1.916290e-02	ci right 1.964733e-02	k: 24255	n:1250000
Cons ci ratio: 1.116716e-01	ci left: 9.297956e-04	ci right 1.040538e-03	k: 1230	n:1250000
KS ci ratio: 1.862622e-03	ci left: 7.791702e-01	ci right 7.806237e-01	k: 974872	n:1250000
BMP1   1250000 perm   973 sec   (1285 perm/sec)   p_kst 7.798976e-01   p_cons 9.840000e-04   p_joint 1.940400e-02

Joint ci ratio: 2.482564e-02	ci left: 1.916303e-02	ci right 1.964553e-02	k: 24448	n:1260000
Cons ci ratio: 1.113556e-01	ci left: 9.278168e-04	ci right 1.037990e-03	k: 1237	n:1260000
KS ci ratio: 1.854976e-03	ci left: 7.792177e-01	ci right 7.806652e-01	k: 982727	n:1260000
BMP1   1260000 perm   986 sec   (1278 perm/sec)   p_kst 7.799421e-01   p_cons 9.817460e-04   p_joint 1.940317e-02

Joint ci ratio: 2.472773e-02	ci left: 1.916395e-02	ci right 1.964454e-02	k: 24642	n:1270000
Cons ci ratio: 1.109976e-01	ci left: 9.266352e-04	ci right 1.036291e-03	k: 1245	n:1270000
KS ci ratio: 1.847766e-03	ci left: 7.792005e-01	ci right 7.806423e-01	k: 990501	n:1270000
BMP1   1270000 perm   999 sec   (1271 perm/sec)   p_kst 7.799220e-01   p_cons 9.803150e-04   p_joint 1.940315e-02

Joint ci ratio: 2.453193e-02	ci left: 1.931784e-02	ci right 1.979840e-02	k: 25033	n:1280000
Cons ci ratio: 1.104229e-01	ci left: 9.292709e-04	ci right 1.038632e-03	k: 1258	n:1280000
KS ci ratio: 1.840547e-03	ci left: 7.792008e-01	ci right 7.806370e-01	k: 998297	n:1280000
BMP1   1280000 perm   1012 sec   (1265 perm/sec)   p_kst 7.799195e-01   p_cons 9.828125e-04   p_joint 1.955703e-02

Joint ci ratio: 2.442905e-02	ci left: 1.933066e-02	ci right 1.980949e-02	k: 25244	n:1290000
Cons ci ratio: 1.100304e-01	ci left: 9.288516e-04	ci right 1.037750e-03	k: 1267	n:1290000
KS ci ratio: 1.833251e-03	ci left: 7.792314e-01	ci right 7.806620e-01	k: 1006132	n:1290000
BMP1   1290000 perm   1025 sec   (1258 perm/sec)   p_kst 7.799473e-01   p_cons 9.821705e-04   p_joint 1.956899e-02

Joint ci ratio: 2.442353e-02	ci left: 1.919341e-02	ci right 1.966873e-02	k: 25259	n:1300000
Cons ci ratio: 1.094278e-01	ci left: 9.321804e-04	ci right 1.040832e-03	k: 1281	n:1300000
KS ci ratio: 1.825783e-03	ci left: 7.793100e-01	ci right 7.807349e-01	k: 1014030	n:1300000
BMP1   1300000 perm   1039 sec   (1252 perm/sec)   p_kst 7.800231e-01   p_cons 9.853846e-04   p_joint 1.943000e-02

Joint ci ratio: 2.433125e-02	ci left: 1.919257e-02	ci right 1.966605e-02	k: 25451	n:1310000
Cons ci ratio: 1.091728e-01	ci left: 9.295194e-04	ci right 1.037592e-03	k: 1287	n:1310000
KS ci ratio: 1.818904e-03	ci left: 7.792935e-01	ci right 7.807129e-01	k: 1021805	n:1310000
BMP1   1310000 perm   1052 sec   (1245 perm/sec)   p_kst 7.800038e-01   p_cons 9.824427e-04   p_joint 1.942824e-02

Joint ci ratio: 2.414418e-02	ci left: 1.934236e-02	ci right 1.981581e-02	k: 25843	n:1320000
Cons ci ratio: 1.087934e-01	ci left: 9.291099e-04	ci right 1.036735e-03	k: 1296	n:1320000
KS ci ratio: 1.811789e-03	ci left: 7.793363e-01	ci right 7.807503e-01	k: 1029658	n:1320000
BMP1   1320000 perm   1066 sec   (1239 perm/sec)   p_kst 7.800439e-01   p_cons 9.818182e-04   p_joint 1.957803e-02

Joint ci ratio: 2.299220e-02	ci left: 2.114202e-02	ci right 2.163451e-02	k: 28445	n:1330000
Cons ci ratio: 1.082521e-01	ci left: 9.316333e-04	ci right 1.038980e-03	k: 1309	n:1330000
KS ci ratio: 1.804745e-03	ci left: 7.793808e-01	ci right 7.807894e-01	k: 1037514	n:1330000
BMP1   1330000 perm   1079 sec   (1232 perm/sec)   p_kst 7.800857e-01   p_cons 9.842105e-04   p_joint 2.138722e-02

Joint ci ratio: 2.290743e-02	ci left: 2.114080e-02	ci right 2.163142e-02	k: 28656	n:1340000
Cons ci ratio: 1.077596e-01	ci left: 9.333942e-04	ci right 1.040423e-03	k: 1321	n:1340000
KS ci ratio: 1.797931e-03	ci left: 7.793963e-01	ci right 7.807995e-01	k: 1045332	n:1340000
BMP1   1340000 perm   1094 sec   (1225 perm/sec)   p_kst 7.800985e-01   p_cons 9.858209e-04   p_joint 2.138507e-02

Joint ci ratio: 2.282197e-02	ci left: 2.114255e-02	ci right 2.163136e-02	k: 28871	n:1350000
Cons ci ratio: 1.071131e-01	ci left: 9.380136e-04	ci right 1.044887e-03	k: 1337	n:1350000
KS ci ratio: 1.791631e-03	ci left: 7.793277e-01	ci right 7.807259e-01	k: 1053037	n:1350000
BMP1   1350000 perm   1108 sec   (1219 perm/sec)   p_kst 7.800274e-01   p_cons 9.903704e-04   p_joint 2.138593e-02

Joint ci ratio: 2.273586e-02	ci left: 2.114720e-02	ci right 2.163425e-02	k: 29090	n:1360000
Cons ci ratio: 1.067944e-01	ci left: 9.368414e-04	ci right 1.043243e-03	k: 1345	n:1360000
KS ci ratio: 1.784853e-03	ci left: 7.793647e-01	ci right 7.807577e-01	k: 1060884	n:1360000
BMP1   1360000 perm   1121 sec   (1213 perm/sec)   p_kst 7.800618e-01   p_cons 9.889706e-04   p_joint 2.138971e-02

Joint ci ratio: 2.265150e-02	ci left: 2.115034e-02	ci right 2.163563e-02	k: 29307	n:1370000
Cons ci ratio: 1.066363e-01	ci left: 9.328449e-04	ci right 1.038626e-03	k: 1349	n:1370000
KS ci ratio: 1.778504e-03	ci left: 7.793332e-01	ci right 7.807211e-01	k: 1068638	n:1370000
BMP1   1370000 perm   1136 sec   (1206 perm/sec)   p_kst 7.800277e-01   p_cons 9.846715e-04   p_joint 2.139197e-02

Joint ci ratio: 2.257512e-02	ci left: 2.114046e-02	ci right 2.162387e-02	k: 29506	n:1380000
Cons ci ratio: 1.061264e-01	ci left: 9.352548e-04	ci right 1.040771e-03	k: 1362	n:1380000
KS ci ratio: 1.771993e-03	ci left: 7.793464e-01	ci right 7.807293e-01	k: 1076453	n:1380000
BMP1   1380000 perm   1150 sec   (1200 perm/sec)   p_kst 7.800384e-01   p_cons 9.869565e-04   p_joint 2.138116e-02

Joint ci ratio: 2.249486e-02	ci left: 2.113931e-02	ci right 2.162096e-02	k: 29717	n:1390000
Cons ci ratio: 1.055470e-01	ci left: 9.390322e-04	ci right 1.044360e-03	k: 1377	n:1390000
KS ci ratio: 1.765824e-03	ci left: 7.793068e-01	ci right 7.806848e-01	k: 1084195	n:1390000
BMP1   1390000 perm   1164 sec   (1194 perm/sec)   p_kst 7.799964e-01   p_cons 9.906475e-04   p_joint 2.137914e-02

Joint ci ratio: 2.241621e-02	ci left: 2.113677e-02	ci right 2.161664e-02	k: 29926	n:1400000
Cons ci ratio: 1.049770e-01	ci left: 9.427571e-04	ci right 1.047896e-03	k: 1392	n:1400000
KS ci ratio: 1.759377e-03	ci left: 7.793343e-01	ci right 7.807074e-01	k: 1092030	n:1400000
BMP1   1400000 perm   1178 sec   (1188 perm/sec)   p_kst 7.800214e-01   p_cons 9.942857e-04   p_joint 2.137571e-02

Joint ci ratio: 2.234065e-02	ci left: 2.113003e-02	ci right 2.160811e-02	k: 30129	n:1410000
Cons ci ratio: 1.044905e-01	ci left: 9.450493e-04	ci right 1.049926e-03	k: 1405	n:1410000
KS ci ratio: 1.753313e-03	ci left: 7.793004e-01	ci right 7.806687e-01	k: 1099779	n:1410000
BMP1   1410000 perm   1192 sec   (1183 perm/sec)   p_kst 7.799851e-01   p_cons 9.964539e-04   p_joint 2.136809e-02

Joint ci ratio: 2.225462e-02	ci left: 2.114439e-02	ci right 2.162094e-02	k: 30362	n:1420000
Cons ci ratio: 1.042314e-01	ci left: 9.431949e-04	ci right 1.047590e-03	k: 1412	n:1420000
KS ci ratio: 1.747167e-03	ci left: 7.792952e-01	ci right 7.806586e-01	k: 1107568	n:1420000
BMP1   1420000 perm   1207 sec   (1177 perm/sec)   p_kst 7.799775e-01   p_cons 9.943662e-04   p_joint 2.138169e-02

Joint ci ratio: 2.217178e-02	ci left: 2.115439e-02	ci right 2.162937e-02	k: 30589	n:1430000
Cons ci ratio: 1.037551e-01	ci left: 9.454536e-04	ci right 1.049591e-03	k: 1425	n:1430000
KS ci ratio: 1.741107e-03	ci left: 7.792858e-01	ci right 7.806445e-01	k: 1115351	n:1430000
BMP1   1430000 perm   1221 sec   (1171 perm/sec)   p_kst 7.799657e-01   p_cons 9.965035e-04   p_joint 2.139091e-02

Joint ci ratio: 2.209793e-02	ci left: 2.114906e-02	ci right 2.162231e-02	k: 30794	n:1440000
Cons ci ratio: 1.034654e-01	ci left: 9.442996e-04	ci right 1.048002e-03	k: 1433	n:1440000
KS ci ratio: 1.735067e-03	ci left: 7.792850e-01	ci right 7.806389e-01	k: 1123146	n:1440000
BMP1   1440000 perm   1236 sec   (1165 perm/sec)   p_kst 7.799625e-01   p_cons 9.951389e-04   p_joint 2.138472e-02

Joint ci ratio: 2.202227e-02	ci left: 2.114860e-02	ci right 2.162021e-02	k: 31006	n:1450000
Cons ci ratio: 1.030708e-01	ci left: 9.451774e-04	ci right 1.048556e-03	k: 1444	n:1450000
KS ci ratio: 1.729010e-03	ci left: 7.793000e-01	ci right 7.806492e-01	k: 1130964	n:1450000
BMP1   1450000 perm   1251 sec   (1159 perm/sec)   p_kst 7.799752e-01   p_cons 9.958621e-04   p_joint 2.138345e-02

Joint ci ratio: 2.194811e-02	ci left: 2.114680e-02	ci right 2.161675e-02	k: 31216	n:1460000
Cons ci ratio: 1.028576e-01	ci left: 9.427073e-04	ci right 1.045590e-03	k: 1450	n:1460000
KS ci ratio: 1.723078e-03	ci left: 7.793025e-01	ci right 7.806471e-01	k: 1138764	n:1460000
BMP1   1460000 perm   1266 sec   (1153 perm/sec)   p_kst 7.799753e-01   p_cons 9.931507e-04   p_joint 2.138082e-02

Joint ci ratio: 2.187753e-02	ci left: 2.113960e-02	ci right 2.160787e-02	k: 31418	n:1470000
Cons ci ratio: 1.025401e-01	ci left: 9.422595e-04	ci right 1.044757e-03	k: 1459	n:1470000
KS ci ratio: 1.717135e-03	ci left: 7.793192e-01	ci right 7.806592e-01	k: 1146585	n:1470000
BMP1   1470000 perm   1281 sec   (1148 perm/sec)   p_kst 7.799898e-01   p_cons 9.925170e-04   p_joint 2.137279e-02

Joint ci ratio: 2.180305e-02	ci left: 2.114124e-02	ci right 2.160793e-02	k: 31633	n:1480000
Cons ci ratio: 1.021559e-01	ci left: 9.431351e-04	ci right 1.045320e-03	k: 1470	n:1480000
KS ci ratio: 1.711283e-03	ci left: 7.793297e-01	ci right 7.806651e-01	k: 1154397	n:1480000
BMP1   1480000 perm   1296 sec   (1142 perm/sec)   p_kst 7.799980e-01   p_cons 9.932432e-04   p_joint 2.137365e-02

Joint ci ratio: 2.173106e-02	ci left: 2.113953e-02	ci right 2.160462e-02	k: 31843	n:1490000
Cons ci ratio: 1.019829e-01	ci left: 9.400753e-04	ci right 1.041746e-03	k: 1475	n:1490000
KS ci ratio: 1.705591e-03	ci left: 7.793199e-01	ci right 7.806509e-01	k: 1162179	n:1490000
BMP1   1490000 perm   1311 sec   (1137 perm/sec)   p_kst 7.799859e-01   p_cons 9.899329e-04   p_joint 2.137114e-02

Joint ci ratio: 2.165185e-02	ci left: 2.115309e-02	ci right 2.161676e-02	k: 32076	n:1500000
Cons ci ratio: 1.017421e-01	ci left: 9.383559e-04	ci right 1.039587e-03	k: 1482	n:1500000
KS ci ratio: 1.699902e-03	ci left: 7.793209e-01	ci right 7.806474e-01	k: 1169977	n:1500000
BMP1   1500000 perm   1326 sec   (1131 perm/sec)   p_kst 7.799847e-01   p_cons 9.880000e-04   p_joint 2.138400e-02

Joint ci ratio: 2.158306e-02	ci left: 2.114803e-02	ci right 2.161010e-02	k: 32281	n:1510000
Cons ci ratio: 1.015370e-01	ci left: 9.360140e-04	ci right 1.036777e-03	k: 1488	n:1510000
KS ci ratio: 1.694260e-03	ci left: 7.793238e-01	ci right 7.806460e-01	k: 1177778	n:1510000
BMP1   1510000 perm   1341 sec   (1126 perm/sec)   p_kst 7.799854e-01   p_cons 9.854305e-04   p_joint 2.137815e-02

Joint ci ratio: 2.170305e-02	ci left: 2.078377e-02	ci right 2.124043e-02	k: 31937	n:1520000
Cons ci ratio: 1.012654e-01	ci left: 9.349857e-04	ci right 1.035352e-03	k: 1496	n:1520000
KS ci ratio: 1.688713e-03	ci left: 7.793189e-01	ci right 7.806367e-01	k: 1185567	n:1520000
BMP1   1520000 perm   1356 sec   (1121 perm/sec)   p_kst 7.799783e-01   p_cons 9.842105e-04   p_joint 2.101118e-02

Joint ci ratio: 2.162690e-02	ci left: 2.079419e-02	ci right 2.124946e-02	k: 32162	n:1530000
Cons ci ratio: 1.007283e-01	ci left: 9.390682e-04	ci right 1.039307e-03	k: 1512	n:1530000
KS ci ratio: 1.683335e-03	ci left: 7.792904e-01	ci right 7.806040e-01	k: 1193320	n:1530000
BMP1   1530000 perm   1372 sec   (1115 perm/sec)   p_kst 7.799477e-01   p_cons 9.882353e-04   p_joint 2.102092e-02

Joint ci ratio: 2.155834e-02	ci left: 2.079156e-02	ci right 2.124531e-02	k: 32367	n:1540000
Cons ci ratio: 1.004631e-01	ci left: 9.380344e-04	ci right 1.037884e-03	k: 1520	n:1540000
KS ci ratio: 1.678091e-03	ci left: 7.792454e-01	ci right 7.805548e-01	k: 1201047	n:1540000
BMP1   1540000 perm   1387 sec   (1110 perm/sec)   p_kst 7.799006e-01   p_cons 9.870130e-04   p_joint 2.101753e-02

Joint ci ratio: 2.149650e-02	ci left: 2.077741e-02	ci right 2.122954e-02	k: 32554	n:1550000
Cons ci ratio: 1.001673e-01	ci left: 9.376433e-04	ci right 1.037140e-03	k: 1529	n:1550000
KS ci ratio: 1.672719e-03	ci left: 7.792372e-01	ci right 7.805424e-01	k: 1208830	n:1550000
BMP1   1550000 perm   1403 sec   (1105 perm/sec)   p_kst 7.798903e-01   p_cons 9.864516e-04   p_joint 2.100258e-02

Joint ci ratio: 2.142516e-02	ci left: 2.078258e-02	ci right 2.123330e-02	k: 32771	n:1560000
Cons ci ratio: 9.987396e-02	ci left: 9.372577e-04	ci right 1.036405e-03	k: 1538	n:1560000
KS ci ratio: 1.667249e-03	ci left: 7.792599e-01	ci right 7.805608e-01	k: 1216661	n:1560000
BMP1   1560000 perm   1418 sec   (1100 perm/sec)   p_kst 7.799109e-01   p_cons 9.858974e-04   p_joint 2.100705e-02

Outputting figure to mutsig2_images.part000000000016/BMP1.4_3131_1560000_0.77991_0.0009859_0.021007.png
                gene_name: BMP1
               theta_stop: 0.100 
                    nperm: 1560000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.00099 
      ci_cons_bounds_left: 0.00094 
     ci_cons_bounds_right: 0.0010 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.021 

Current progress: 57 percent done.
BMP2K
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.186529e-01	ci left: 9.253239e-02	ci right 1.043027e-01	k: 983	n:10000
Cons ci ratio: 1.284434e-01	ci left: 7.970251e-02	ci right 9.074052e-02	k: 851	n:10000
KS ci ratio: 6.448821e-02	ci left: 2.610197e-01	ci right 2.785146e-01	k: 2697	n:10000
BMP2K   10000 perm   2 sec   (4543 perm/sec)   p_kst 2.697000e-01   p_cons 8.510000e-02   p_joint 9.830000e-02

Joint ci ratio: 7.265587e-02	ci left: 1.224148e-01	ci right 1.316940e-01	k: 2540	n:20000
Cons ci ratio: 9.138306e-02	ci left: 8.038716e-02	ci right 8.813421e-02	k: 1684	n:20000
KS ci ratio: 4.595597e-02	ci left: 2.605803e-01	ci right 2.728876e-01	k: 5334	n:20000
BMP2K   20000 perm   5 sec   (4126 perm/sec)   p_kst 2.667000e-01   p_cons 8.420000e-02   p_joint 1.270000e-01

Outputting figure to mutsig2_images.part000000000016/BMP2K.4_3588_20000_0.2667_0.0842_0.127.png
                gene_name: BMP2K
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 59 percent done.
BDKRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.571888e-02	ci left: 5.364800e-01	ci right 5.560930e-01	k: 5463	n:10000
Cons ci ratio: 5.948178e-02	ci left: 2.937039e-01	ci right 3.118111e-01	k: 3027	n:10000
KS ci ratio: 1.475807e-02	ci left: 8.692784e-01	ci right 8.823018e-01	k: 8759	n:10000
BDKRB2   10000 perm   2 sec   (6062 perm/sec)   p_kst 8.759000e-01   p_cons 3.027000e-01   p_joint 5.463000e-01

Outputting figure to mutsig2_images.part000000000016/BDKRB2.3_1184_10000_0.8759_0.3027_0.5463.png
                gene_name: BDKRB2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 61 percent done.
BECN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.982702e-02	ci left: 7.882705e-01	ci right 8.041566e-01	k: 7963	n:10000
Cons ci ratio: 3.640140e-02	ci left: 5.270673e-01	ci right 5.467112e-01	k: 5369	n:10000
KS ci ratio: 1.464933e-02	ci left: 8.709139e-01	ci right 8.838654e-01	k: 8775	n:10000
BECN1   10000 perm   2 sec   (5901 perm/sec)   p_kst 8.775000e-01   p_cons 5.369000e-01   p_joint 7.963000e-01

Outputting figure to mutsig2_images.part000000000016/BECN1.3_1397_10000_0.8775_0.5369_0.7963.png
                gene_name: BECN1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 63 percent done.
BEST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.533871e-02	ci left: 5.417887e-01	ci right 5.613813e-01	k: 5516	n:10000
Cons ci ratio: 4.304220e-02	ci left: 4.435078e-01	ci right 4.631194e-01	k: 4533	n:10000
KS ci ratio: 4.618013e-02	ci left: 4.090055e-01	ci right 4.284419e-01	k: 4187	n:10000
BEST2   10000 perm   2 sec   (6103 perm/sec)   p_kst 4.187000e-01   p_cons 4.533000e-01   p_joint 5.516000e-01

Outputting figure to mutsig2_images.part000000000016/BEST2.3_1566_10000_0.4187_0.4533_0.5516.png
                gene_name: BEST2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 65 percent done.
BFSP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.809519e-03	ci left: 9.476267e-01	ci right 9.561076e-01	k: 9520	n:10000
Cons ci ratio: 1.528930e-02	ci left: 8.612085e-01	ci right 8.745764e-01	k: 8680	n:10000
KS ci ratio: 2.074603e-02	ci left: 7.729656e-01	ci right 7.892703e-01	k: 7812	n:10000
BFSP1   10000 perm   2 sec   (5542 perm/sec)   p_kst 7.812000e-01   p_cons 8.680000e-01   p_joint 9.520000e-01

Outputting figure to mutsig2_images.part000000000016/BFSP1.3_2036_10000_0.7812_0.868_0.952.png
                gene_name: BFSP1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 67 percent done.
BIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.854123e-02	ci left: 4.985503e-01	ci right 5.182448e-01	k: 5084	n:10000
Cons ci ratio: 8.246634e-02	ci left: 1.766450e-01	ci right 1.919393e-01	k: 1842	n:10000
KS ci ratio: 4.242237e-02	ci left: 4.506935e-01	ci right 4.703295e-01	k: 4605	n:10000
BIN2   10000 perm   2 sec   (5586 perm/sec)   p_kst 4.605000e-01   p_cons 1.842000e-01   p_joint 5.084000e-01

Outputting figure to mutsig2_images.part000000000016/BIN2.3_1750_10000_0.4605_0.1842_0.5084.png
                gene_name: BIN2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 69 percent done.
BLID
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.375804e-01	ci left: 2.334629e-02	ci right 2.973355e-02	k: 264	n:10000
Cons ci ratio: 4.208622e-01	ci left: 6.794980e-03	ci right 1.049980e-02	k: 85	n:10000
KS ci ratio: 1.711004e-02	ci left: 8.326658e-01	ci right 8.471356e-01	k: 8400	n:10000
BLID   10000 perm   2 sec   (6248 perm/sec)   p_kst 8.400000e-01   p_cons 8.500000e-03   p_joint 2.640000e-02

Joint ci ratio: 1.139647e-01	ci left: 5.265862e-02	ci right 5.907127e-02	k: 1116	n:20000
Cons ci ratio: 2.671533e-01	ci left: 9.227203e-03	ci right 1.211771e-02	k: 212	n:20000
KS ci ratio: 1.218788e-02	ci left: 8.328196e-01	ci right 8.430820e-01	k: 16760	n:20000
BLID   20000 perm   4 sec   (5513 perm/sec)   p_kst 8.380000e-01   p_cons 1.060000e-02   p_joint 5.580000e-02

Joint ci ratio: 1.021763e-01	ci left: 4.437225e-02	ci right 4.918268e-02	k: 1402	n:30000
Cons ci ratio: 2.189992e-01	ci left: 9.409021e-03	ci right 1.175388e-02	k: 316	n:30000
KS ci ratio: 9.836139e-03	ci left: 8.369471e-01	ci right 8.452534e-01	k: 25234	n:30000
BLID   30000 perm   6 sec   (5267 perm/sec)   p_kst 8.411333e-01   p_cons 1.053333e-02   p_joint 4.673333e-02

Joint ci ratio: 8.389914e-02	ci left: 4.957473e-02	ci right 5.394064e-02	k: 2069	n:40000
Cons ci ratio: 1.891328e-01	ci left: 9.619560e-03	ci right 1.165242e-02	k: 424	n:40000
KS ci ratio: 8.461901e-03	ci left: 8.392965e-01	ci right 8.464536e-01	k: 33716	n:40000
BLID   40000 perm   8 sec   (5098 perm/sec)   p_kst 8.429000e-01   p_cons 1.060000e-02   p_joint 5.172500e-02

Joint ci ratio: 6.961062e-02	ci left: 5.756017e-02	ci right 6.173114e-02	k: 2981	n:50000
Cons ci ratio: 1.706741e-01	ci left: 9.548446e-03	ci right 1.134907e-02	k: 521	n:50000
KS ci ratio: 7.557652e-03	ci left: 8.400636e-01	ci right 8.464565e-01	k: 42164	n:50000
BLID   50000 perm   10 sec   (4971 perm/sec)   p_kst 8.432800e-01   p_cons 1.042000e-02   p_joint 5.962000e-02

Joint ci ratio: 6.819151e-02	ci left: 5.041718e-02	ci right 5.399295e-02	k: 3131	n:60000
Cons ci ratio: 1.568701e-01	ci left: 9.491530e-03	ci right 1.112303e-02	k: 617	n:60000
KS ci ratio: 6.899919e-03	ci left: 8.403160e-01	ci right 8.461508e-01	k: 50595	n:60000
BLID   60000 perm   12 sec   (4833 perm/sec)   p_kst 8.432500e-01   p_cons 1.028333e-02   p_joint 5.218333e-02

Joint ci ratio: 6.570617e-02	ci left: 4.679365e-02	ci right 4.998677e-02	k: 3386	n:70000
Cons ci ratio: 1.443262e-01	ci left: 9.675451e-03	ci right 1.119411e-02	k: 729	n:70000
KS ci ratio: 6.376499e-03	ci left: 8.410173e-01	ci right 8.464114e-01	k: 59061	n:70000
BLID   70000 perm   15 sec   (4727 perm/sec)   p_kst 8.437286e-01   p_cons 1.041429e-02   p_joint 4.837143e-02

Joint ci ratio: 6.073123e-02	ci left: 4.799471e-02	ci right 5.101307e-02	k: 3959	n:80000
Cons ci ratio: 1.351922e-01	ci left: 9.696477e-03	ci right 1.111437e-02	k: 831	n:80000
KS ci ratio: 5.947200e-03	ci left: 8.419701e-01	ci right 8.470048e-01	k: 67560	n:80000
BLID   80000 perm   17 sec   (4626 perm/sec)   p_kst 8.445000e-01   p_cons 1.038750e-02   p_joint 4.948750e-02

Joint ci ratio: 5.731893e-02	ci left: 4.798227e-02	ci right 5.082464e-02	k: 4445	n:90000
Cons ci ratio: 1.271862e-01	ci left: 9.779757e-03	ci right 1.111874e-02	k: 939	n:90000
KS ci ratio: 5.621053e-03	ci left: 8.414562e-01	ci right 8.462105e-01	k: 75946	n:90000
BLID   90000 perm   20 sec   (4529 perm/sec)   p_kst 8.438444e-01   p_cons 1.043333e-02   p_joint 4.938889e-02

Joint ci ratio: 5.771265e-02	ci left: 4.282583e-02	ci right 4.538070e-02	k: 4409	n:100000
Cons ci ratio: 1.208024e-01	ci left: 9.790159e-03	ci right 1.105848e-02	k: 1041	n:100000
KS ci ratio: 5.323575e-03	ci left: 8.420278e-01	ci right 8.465322e-01	k: 84429	n:100000
BLID   100000 perm   23 sec   (4434 perm/sec)   p_kst 8.442900e-01   p_cons 1.041000e-02   p_joint 4.409000e-02

Joint ci ratio: 6.019786e-02	ci left: 3.599969e-02	ci right 3.824298e-02	k: 4082	n:110000
Cons ci ratio: 1.151400e-01	ci left: 9.826541e-03	ci right 1.103584e-02	k: 1146	n:110000
KS ci ratio: 5.077210e-03	ci left: 8.420615e-01	ci right 8.463567e-01	k: 92864	n:110000
BLID   110000 perm   25 sec   (4343 perm/sec)   p_kst 8.442182e-01   p_cons 1.041818e-02   p_joint 3.710909e-02

Joint ci ratio: 5.706655e-02	ci left: 3.675264e-02	ci right 3.891977e-02	k: 4539	n:120000
Cons ci ratio: 1.109243e-01	ci left: 9.728335e-03	ci right 1.087885e-02	k: 1235	n:120000
KS ci ratio: 4.869858e-03	ci left: 8.416748e-01	ci right 8.457919e-01	k: 101249	n:120000
BLID   120000 perm   28 sec   (4259 perm/sec)   p_kst 8.437417e-01   p_cons 1.029167e-02   p_joint 3.782500e-02

Joint ci ratio: 5.534640e-02	ci left: 3.612459e-02	ci right 3.818843e-02	k: 4829	n:130000
Cons ci ratio: 1.062126e-01	ci left: 9.818174e-03	ci right 1.092691e-02	k: 1347	n:130000
KS ci ratio: 4.679817e-03	ci left: 8.416990e-01	ci right 8.456549e-01	k: 109679	n:130000
BLID   130000 perm   31 sec   (4170 perm/sec)   p_kst 8.436846e-01   p_cons 1.036154e-02   p_joint 3.714615e-02

Joint ci ratio: 5.197093e-02	ci left: 3.803421e-02	ci right 4.007065e-02	k: 5466	n:140000
Cons ci ratio: 1.115545e-01	ci left: 8.254891e-03	ci right 9.237047e-03	k: 1223	n:140000
KS ci ratio: 4.497834e-03	ci left: 8.424619e-01	ci right 8.462667e-01	k: 118212	n:140000
BLID   140000 perm   34 sec   (4086 perm/sec)   p_kst 8.443714e-01   p_cons 8.735714e-03   p_joint 3.904286e-02

Joint ci ratio: 4.889243e-02	ci left: 4.008773e-02	ci right 4.210339e-02	k: 6163	n:150000
Cons ci ratio: 1.076655e-01	ci left: 8.288125e-03	ci right 9.237676e-03	k: 1313	n:150000
KS ci ratio: 4.345397e-03	ci left: 8.425222e-01	ci right 8.461978e-01	k: 126655	n:150000
BLID   150000 perm   37 sec   (4007 perm/sec)   p_kst 8.443667e-01   p_cons 8.753333e-03   p_joint 4.108667e-02

Joint ci ratio: 5.085429e-02	ci left: 3.489493e-02	ci right 3.672194e-02	k: 5728	n:160000
Cons ci ratio: 1.042316e-01	ci left: 8.305547e-03	ci right 9.224886e-03	k: 1401	n:160000
KS ci ratio: 4.243637e-03	ci left: 8.403039e-01	ci right 8.438837e-01	k: 134736	n:160000
BLID   160000 perm   41 sec   (3935 perm/sec)   p_kst 8.421000e-01   p_cons 8.756250e-03   p_joint 3.580000e-02

Joint ci ratio: 4.923977e-02	ci left: 3.505549e-02	ci right 3.683097e-02	k: 6109	n:170000
Cons ci ratio: 1.008001e-01	ci left: 8.372960e-03	ci right 9.267441e-03	k: 1498	n:170000
KS ci ratio: 4.121847e-03	ci left: 8.400388e-01	ci right 8.435143e-01	k: 143103	n:170000
BLID   170000 perm   44 sec   (3867 perm/sec)   p_kst 8.417824e-01   p_cons 8.811765e-03   p_joint 3.593529e-02

Joint ci ratio: 4.823431e-02	ci left: 3.454007e-02	ci right 3.625272e-02	k: 6370	n:180000
Cons ci ratio: 9.796556e-02	ci left: 8.384535e-03	ci right 9.253617e-03	k: 1586	n:180000
KS ci ratio: 4.003527e-03	ci left: 8.402342e-01	ci right 8.436103e-01	k: 151547	n:180000
BLID   180000 perm   47 sec   (3805 perm/sec)   p_kst 8.419278e-01   p_cons 8.811111e-03   p_joint 3.538889e-02

Outputting figure to mutsig2_images.part000000000016/BLID.3_331_180000_0.84193_0.0088111_0.035389.png
                gene_name: BLID
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.0088 
      ci_cons_bounds_left: 0.0084 
     ci_cons_bounds_right: 0.0093 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.036 

Current progress: 70 percent done.
BLK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.446075e-02	ci left: 2.088557e-01	ci right 2.251095e-01	k: 2169	n:10000
Cons ci ratio: 4.965508e-03	ci left: 9.816675e-01	ci right 9.866446e-01	k: 9843	n:10000
KS ci ratio: 9.817468e-02	ci left: 1.307088e-01	ci right 1.443032e-01	k: 1374	n:10000
BLK   10000 perm   2 sec   (6048 perm/sec)   p_kst 1.374000e-01   p_cons 9.843000e-01   p_joint 2.169000e-01

Outputting figure to mutsig2_images.part000000000016/BLK.3_1566_10000_0.1374_0.9843_0.2169.png
                gene_name: BLK
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 72 percent done.
BMI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.302001e-02	ci left: 1.437406e-01	ci right 1.578635e-01	k: 1507	n:10000
Cons ci ratio: 5.780619e-02	ci left: 3.058014e-01	ci right 3.241065e-01	k: 3149	n:10000
KS ci ratio: 1.207044e-01	ci left: 8.961344e-02	ci right 1.012235e-01	k: 953	n:10000
BMI1   10000 perm   2 sec   (5957 perm/sec)   p_kst 9.530000e-02   p_cons 3.149000e-01   p_joint 1.507000e-01

Joint ci ratio: 6.474296e-02	ci left: 1.498618e-01	ci right 1.599388e-01	k: 3097	n:20000
Cons ci ratio: 4.139717e-02	ci left: 3.030962e-01	ci right 3.159592e-01	k: 6190	n:20000
KS ci ratio: 8.575060e-02	ci left: 9.052910e-02	ci right 9.868920e-02	k: 1891	n:20000
BMI1   20000 perm   4 sec   (5276 perm/sec)   p_kst 9.455000e-02   p_cons 3.095000e-01   p_joint 1.548500e-01

Outputting figure to mutsig2_images.part000000000016/BMI1.3_1017_20000_0.09455_0.3095_0.15485.png
                gene_name: BMI1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 74 percent done.
BMP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.777764e-02	ci left: 5.085527e-01	ci right 5.282366e-01	k: 5184	n:10000
Cons ci ratio: 5.788665e-02	ci left: 3.052063e-01	ci right 3.235020e-01	k: 3143	n:10000
KS ci ratio: 3.105166e-02	ci left: 6.047779e-01	ci right 6.239554e-01	k: 6144	n:10000
BMP10   10000 perm   2 sec   (6053 perm/sec)   p_kst 6.144000e-01   p_cons 3.143000e-01   p_joint 5.184000e-01

Outputting figure to mutsig2_images.part000000000016/BMP10.3_1283_10000_0.6144_0.3143_0.5184.png
                gene_name: BMP10
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 76 percent done.
BMP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.483886e-02	ci left: 7.045272e-01	ci right 7.223483e-01	k: 7135	n:10000
Cons ci ratio: 2.544741e-02	ci left: 6.944402e-01	ci right 7.124411e-01	k: 7035	n:10000
KS ci ratio: 4.471269e-02	ci left: 4.247549e-01	ci right 4.442833e-01	k: 4345	n:10000
BMP6   10000 perm   2 sec   (6048 perm/sec)   p_kst 4.345000e-01   p_cons 7.035000e-01   p_joint 7.135000e-01

Outputting figure to mutsig2_images.part000000000016/BMP6.3_1570_10000_0.4345_0.7035_0.7135.png
                gene_name: BMP6
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 78 percent done.
BCS1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.743434e-02	ci left: 6.618937e-01	ci right 6.804065e-01	k: 6712	n:10000
Cons ci ratio: 1.585132e-02	ci left: 8.525343e-01	ci right 8.662556e-01	k: 8595	n:10000
KS ci ratio: 5.997850e-02	ci left: 2.902347e-01	ci right 3.082824e-01	k: 2992	n:10000
BCS1L   10000 perm   2 sec   (6595 perm/sec)   p_kst 2.992000e-01   p_cons 8.595000e-01   p_joint 6.712000e-01

Outputting figure to mutsig2_images.part000000000016/BCS1L.2_1288_10000_0.2992_0.8595_0.6712.png
                gene_name: BCS1L
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 80 percent done.
BEGAIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.586887e-02	ci left: 6.874832e-01	ci right 7.056022e-01	k: 6966	n:10000
Cons ci ratio: 2.773313e-02	ci left: 6.570614e-01	ci right 6.756416e-01	k: 6664	n:10000
KS ci ratio: 4.247362e-02	ci left: 4.500946e-01	ci right 4.697287e-01	k: 4599	n:10000
BEGAIN   10000 perm   2 sec   (6013 perm/sec)   p_kst 4.599000e-01   p_cons 6.664000e-01   p_joint 6.966000e-01

Outputting figure to mutsig2_images.part000000000016/BEGAIN.2_1806_10000_0.4599_0.6664_0.6966.png
                gene_name: BEGAIN
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 81 percent done.
BEND4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.316878e-02	ci left: 7.323953e-01	ci right 7.496640e-01	k: 7411	n:10000
Cons ci ratio: 1.791789e-02	ci left: 8.196449e-01	ci right 8.345640e-01	k: 8272	n:10000
KS ci ratio: 7.302283e-02	ci left: 2.154651e-01	ci right 2.318962e-01	k: 2236	n:10000
BEND4   10000 perm   2 sec   (6050 perm/sec)   p_kst 2.236000e-01   p_cons 8.272000e-01   p_joint 7.411000e-01

Outputting figure to mutsig2_images.part000000000016/BEND4.2_1625_10000_0.2236_0.8272_0.7411.png
                gene_name: BEND4
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 83 percent done.
BEND6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.978639e-02	ci left: 4.826547e-01	ci right 5.023497e-01	k: 4925	n:10000
Cons ci ratio: 1.203560e-01	ci left: 9.009981e-02	ci right 1.017368e-01	k: 958	n:10000
KS ci ratio: 3.957213e-02	ci left: 4.853532e-01	ci right 5.050496e-01	k: 4952	n:10000
BEND6   10000 perm   2 sec   (6575 perm/sec)   p_kst 4.952000e-01   p_cons 9.580000e-02   p_joint 4.925000e-01

Joint ci ratio: 6.629463e-02	ci left: 1.438447e-01	ci right 1.537576e-01	k: 2975	n:20000
Cons ci ratio: 7.296871e-02	ci left: 1.214797e-01	ci right 1.307293e-01	k: 2521	n:20000
KS ci ratio: 2.812975e-02	ci left: 4.856477e-01	ci right 4.995544e-01	k: 9852	n:20000
BEND6   20000 perm   4 sec   (5637 perm/sec)   p_kst 4.926000e-01   p_cons 1.260500e-01   p_joint 1.487500e-01

Outputting figure to mutsig2_images.part000000000016/BEND6.2_860_20000_0.4926_0.12605_0.14875.png
                gene_name: BEND6
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 85 percent done.
BEST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.432059e-02	ci left: 8.758224e-01	ci right 8.885540e-01	k: 8823	n:10000
KS ci ratio: 1.271204e-02	ci left: 8.989819e-01	ci right 9.105811e-01	k: 9049	n:10000
BEST1   10000 perm   2 sec   (5730 perm/sec)   p_kst 9.049000e-01   p_cons 8.823000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BEST1.2_2054_10000_0.9049_0.8823_1.png
                gene_name: BEST1
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
BEX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.184739e-03	ci left: 9.725959e-01	ci right 9.787227e-01	k: 9758	n:10000
Cons ci ratio: 7.485634e-03	ci left: 9.611050e-01	ci right 9.684210e-01	k: 9649	n:10000
KS ci ratio: 1.979647e-02	ci left: 7.887776e-01	ci right 8.046492e-01	k: 7968	n:10000
BEX5   10000 perm   1 sec   (6975 perm/sec)   p_kst 7.968000e-01   p_cons 9.649000e-01   p_joint 9.758000e-01

Outputting figure to mutsig2_images.part000000000016/BEX5.2_340_10000_0.7968_0.9649_0.9758.png
                gene_name: BEX5
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 89 percent done.
BFSP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.700582e-02	ci left: 5.188592e-01	ci right 5.385241e-01	k: 5287	n:10000
KS ci ratio: 3.872667e-02	ci left: 4.961503e-01	ci right 5.158462e-01	k: 5060	n:10000
BFSP2   10000 perm   2 sec   (6644 perm/sec)   p_kst 5.060000e-01   p_cons 5.287000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BFSP2.2_1276_10000_0.506_0.5287_1.png
                gene_name: BFSP2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
BGLAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.458394e-02	ci left: 7.087653e-01	ci right 7.265077e-01	k: 7177	n:10000
Cons ci ratio: 2.649463e-02	ci left: 6.772033e-01	ci right 6.954880e-01	k: 6864	n:10000
KS ci ratio: 6.393634e-02	ci left: 2.643844e-01	ci right 2.819479e-01	k: 2731	n:10000
BGLAP   10000 perm   1 sec   (6952 perm/sec)   p_kst 2.731000e-01   p_cons 6.864000e-01   p_joint 7.177000e-01

Outputting figure to mutsig2_images.part000000000016/BGLAP.2_319_10000_0.2731_0.6864_0.7177.png
                gene_name: BGLAP
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 93 percent done.
BIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
Cons ci ratio: 5.027449e-02	ci left: 3.684831e-01	ci right 3.875880e-01	k: 3780	n:10000
KS ci ratio: 1.003866e-01	ci left: 1.256193e-01	ci right 1.389957e-01	k: 1322	n:10000
BIN1   10000 perm   2 sec   (5977 perm/sec)   p_kst 1.322000e-01   p_cons 3.780000e-01   p_joint 3.199000e-01

Joint ci ratio: 2.301731e-03	ci left: 9.919614e-01	ci right 9.942918e-01	k: 19864	n:20000
Cons ci ratio: 3.548508e-02	ci left: 3.721698e-01	ci right 3.856654e-01	k: 7578	n:20000
KS ci ratio: 7.135872e-02	ci left: 1.264021e-01	ci right 1.358055e-01	k: 2621	n:20000
BIN1   20000 perm   4 sec   (5284 perm/sec)   p_kst 1.310500e-01   p_cons 3.789000e-01   p_joint 9.932000e-01

Outputting figure to mutsig2_images.part000000000016/BIN1.2_1907_20000_0.13105_0.3789_0.9932.png
                gene_name: BIN1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 94 percent done.
BLVRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.191527e-01	ci left: 2.759554e-02	ci right 3.448123e-02	k: 309	n:10000
Cons ci ratio: 7.283413e-02	ci left: 2.163531e-01	ci right 2.328076e-01	k: 2245	n:10000
KS ci ratio: 2.217497e-01	ci left: 2.693317e-02	ci right 3.374407e-02	k: 302	n:10000
BLVRA   10000 perm   1 sec   (6900 perm/sec)   p_kst 3.020000e-02   p_cons 2.245000e-01   p_joint 3.090000e-02

Joint ci ratio: 6.755281e-02	ci left: 1.392105e-01	ci right 1.489932e-01	k: 2881	n:20000
Cons ci ratio: 5.093209e-02	ci left: 2.226463e-01	ci right 2.343327e-01	k: 4569	n:20000
KS ci ratio: 1.529431e-01	ci left: 2.936331e-02	ci right 3.427405e-02	k: 635	n:20000
BLVRA   20000 perm   3 sec   (5964 perm/sec)   p_kst 3.175000e-02   p_cons 2.284500e-01   p_joint 1.440500e-01

Joint ci ratio: 4.323665e-02	ci left: 2.103954e-01	ci right 2.197265e-01	k: 6451	n:30000
Cons ci ratio: 4.150363e-02	ci left: 2.244204e-01	ci right 2.339654e-01	k: 6875	n:30000
KS ci ratio: 1.206947e-01	ci left: 3.191308e-02	ci right 3.604448e-02	k: 1018	n:30000
BLVRA   30000 perm   5 sec   (5637 perm/sec)   p_kst 3.393333e-02   p_cons 2.291667e-01   p_joint 2.150333e-01

Joint ci ratio: 3.744041e-02	ci left: 2.110568e-01	ci right 2.191346e-01	k: 8603	n:40000
Cons ci ratio: 3.595598e-02	ci left: 2.249392e-01	ci right 2.332002e-01	k: 9162	n:40000
KS ci ratio: 1.040373e-01	ci left: 3.248908e-02	ci right 3.607895e-02	k: 1370	n:40000
BLVRA   40000 perm   7 sec   (5425 perm/sec)   p_kst 3.425000e-02   p_cons 2.290500e-01   p_joint 2.150750e-01

Joint ci ratio: 4.099755e-02	ci left: 1.514016e-01	ci right 1.577585e-01	k: 7728	n:50000
Cons ci ratio: 3.219422e-02	ci left: 2.250046e-01	ci right 2.323869e-01	k: 11434	n:50000
KS ci ratio: 9.321605e-02	ci left: 3.256543e-02	ci right 3.576895e-02	k: 1707	n:50000
BLVRA   50000 perm   10 sec   (5245 perm/sec)   p_kst 3.414000e-02   p_cons 2.286800e-01   p_joint 1.545600e-01

Outputting figure to mutsig2_images.part000000000016/BLVRA.2_919_50000_0.03414_0.22868_0.15456.png
                gene_name: BLVRA
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 96 percent done.
BLVRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.532262e-02	ci left: 8.606980e-01	ci right 8.740872e-01	k: 8675	n:10000
KS ci ratio: 3.183017e-02	ci left: 5.929300e-01	ci right 6.122102e-01	k: 6026	n:10000
BLVRB   10000 perm   2 sec   (6649 perm/sec)   p_kst 6.026000e-01   p_cons 8.675000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000016/BLVRB.2_641_10000_0.6026_0.8675_1.png
                gene_name: BLVRB
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
BMP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.762269e-02	ci left: 8.244242e-01	ci right 8.391819e-01	k: 8319	n:10000
Cons ci ratio: 4.246508e-02	ci left: 4.501944e-01	ci right 4.698289e-01	k: 4600	n:10000
KS ci ratio: 2.169621e-02	ci left: 7.570693e-01	ci right 7.737758e-01	k: 7655	n:10000
BMP4   10000 perm   2 sec   (6181 perm/sec)   p_kst 7.655000e-01   p_cons 4.600000e-01   p_joint 8.319000e-01

Outputting figure to mutsig2_images.part000000000016/BMP4.2_1235_10000_0.7655_0.46_0.8319.png
                gene_name: BMP4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000016
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 16 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1535>
Subject: Job 9893840: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1535>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000017> was used as the working directory.
Started at Fri Oct  5 23:54:32 2012
Results reported at Sat Oct  6 03:27:45 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000017.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000017.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 17  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000017.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  13537.60 sec.
    Max Memory :      3613 MB
    Max Swap   :      5978 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
17
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 17
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 17: processing genes 1443 - 1533
Calculating significance of each gene.
Using projection method.
1443	BMPER	5.556125e-01
1444	BMPR1A	1.212730e-01
1445	BMPR1B	1.223585e-02
In gene BMPR2 the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 3169    n = 1	mu =   7.59e-07
1446	BMPR2	5.165746e-02
1447	BMS1	4.035383e-02
1448	BMX	2.802669e-01
1449	BNC1	1.640947e-02
1450	BNC2	2.595436e-02
1451	BNIP1	6.741667e-01
1452	BNIP2	2.497369e-01
1453	BNIP3	1
1454	BNIP3L	2.847674e-02
1455	BNIPL	7.607244e-01
1456	BOC	1.919366e-03
1457	BOD1	8.120351e-02
1458	BOD1L	5.746077e-01
1459	BOK	4.061070e-01
1460	BOLA1	5.696589e-01
1461	BOLA3	3.857896e-01
1462	BOLL	1
1463	BPGM	1
1464	BPHL	7.704580e-01
1465	BPI	8.478351e-01
1466	BPIL1	8.826148e-01
1467	BPIL2	1.868847e-01
1468	BPIL3	1.273790e-01
1469	BPNT1	6.702371e-01
1470	BPTF	8.658563e-01
1471	BRAF	1.287970e-12
1472	BRAP	6.110428e-01
1473	BRCA1	8.735079e-01
1474	BRCA2	5.693237e-01
1475	BRCC3	1
1476	BRD1	7.741546e-01
1477	BRD2	7.829002e-01
1478	BRD3	9.322261e-01
1479	BRD4	8.557849e-01
1480	BRD7	1.780789e-01
1481	BRD8	5.665590e-01
1482	BRD9	3.378921e-01
1483	BRDT	1.454580e-01
1484	BRE	1.235852e-01
1485	BRF1	5.392714e-01
1486	BRF2	3.148650e-01
1487	BRI3	1
1488	BRI3BP	7.221400e-01
1489	BRIP1	2.814961e-01
1490	BRIX1	1
1491	BRMS1	7.477963e-01
1492	BRMS1L	1
1493	BRP44	6.972494e-02
1494	BRP44L	2.849908e-01
1495	BRPF1	6.981187e-01
1496	BRPF3	3.702864e-01
1497	BRS3	4.899028e-01
1498	BRSK1	3.780080e-02
1499	BRSK2	9.449869e-01
1500	BRWD1	2.890504e-01
1501	BRWD3	5.706708e-02
1502	BSCL2	8.383966e-01
1503	BSDC1	1
1504	BSG	1
1505	BSN	8.564587e-01
1506	BSND	6.699705e-01
1507	BSPRY	1
1508	BST1	1
1509	BST2	4.842526e-01
1510	BSX	5.931721e-01
1511	BTAF1	3.046280e-01
1512	BTBD1	7.033754e-02
1513	BTBD10	4.378473e-02
1514	BTBD11	2.005842e-01
1515	BTBD12	9.822581e-01
1516	BTBD16	4.839038e-01
1517	BTBD17	1
1518	BTBD2	1
1519	BTBD3	7.023734e-01
1520	BTBD6	1
1521	BTBD7	1.902111e-01
1522	BTBD8	5.196185e-01
1523	BTBD9	7.931754e-01
1524	BTC	9.475342e-02
1525	BTD	4.674803e-01
1526	BTF3	7.714640e-02
1527	BTF3L4	1
1528	BTG1	4.324103e-01
1529	BTG2	1
1530	BTG3	1.624015e-01
1531	BTG4	1.821031e-01
1532	BTK	2.152573e-01
1533	BTLA	5.504339e-01
Done

Running MutSig 2:
Scatter job 17: processing genes 1443 - 1533
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
BRAF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
BRAF   10000 perm   2 sec   (4590 perm/sec)   p_kst 1.000000e-04   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
BRAF   20000 perm   10 sec   (2040 perm/sec)   p_kst 5.000000e-05   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
BRAF   30000 perm   12 sec   (2406 perm/sec)   p_kst 3.333333e-05   p_cons 3.333333e-05   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
BRAF   40000 perm   16 sec   (2545 perm/sec)   p_kst 2.500000e-05   p_cons 2.500000e-05   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
BRAF   50000 perm   19 sec   (2700 perm/sec)   p_kst 2.000000e-05   p_cons 2.000000e-05   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
BRAF   60000 perm   22 sec   (2774 perm/sec)   p_kst 1.666667e-05   p_cons 1.666667e-05   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
BRAF   70000 perm   25 sec   (2829 perm/sec)   p_kst 1.428571e-05   p_cons 1.428571e-05   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
BRAF   80000 perm   28 sec   (2866 perm/sec)   p_kst 1.250000e-05   p_cons 1.250000e-05   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
BRAF   90000 perm   31 sec   (2874 perm/sec)   p_kst 1.111111e-05   p_cons 1.111111e-05   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
BRAF   100000 perm   35 sec   (2871 perm/sec)   p_kst 1.000000e-05   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
BRAF   110000 perm   39 sec   (2850 perm/sec)   p_kst 9.090909e-06   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
BRAF   120000 perm   42 sec   (2830 perm/sec)   p_kst 8.333333e-06   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
BRAF   130000 perm   46 sec   (2815 perm/sec)   p_kst 7.692308e-06   p_cons 7.692308e-06   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
BRAF   140000 perm   50 sec   (2792 perm/sec)   p_kst 7.142857e-06   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
BRAF   150000 perm   54 sec   (2771 perm/sec)   p_kst 6.666667e-06   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
BRAF   160000 perm   58 sec   (2764 perm/sec)   p_kst 6.250000e-06   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
BRAF   170000 perm   62 sec   (2759 perm/sec)   p_kst 5.882353e-06   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
BRAF   180000 perm   66 sec   (2713 perm/sec)   p_kst 5.555556e-06   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
BRAF   190000 perm   71 sec   (2670 perm/sec)   p_kst 5.263158e-06   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
BRAF   200000 perm   75 sec   (2660 perm/sec)   p_kst 5.000000e-06   p_cons 5.000000e-06   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
BRAF   210000 perm   79 sec   (2647 perm/sec)   p_kst 4.761905e-06   p_cons 4.761905e-06   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
BRAF   220000 perm   84 sec   (2608 perm/sec)   p_kst 4.545455e-06   p_cons 4.545455e-06   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
BRAF   230000 perm   89 sec   (2578 perm/sec)   p_kst 4.347826e-06   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
BRAF   240000 perm   94 sec   (2560 perm/sec)   p_kst 4.166667e-06   p_cons 4.166667e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
BRAF   250000 perm   98 sec   (2549 perm/sec)   p_kst 4.000000e-06   p_cons 4.000000e-06   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
BRAF   260000 perm   103 sec   (2533 perm/sec)   p_kst 3.846154e-06   p_cons 3.846154e-06   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
BRAF   270000 perm   107 sec   (2519 perm/sec)   p_kst 3.703704e-06   p_cons 3.703704e-06   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
BRAF   280000 perm   112 sec   (2502 perm/sec)   p_kst 3.571429e-06   p_cons 3.571429e-06   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
BRAF   290000 perm   117 sec   (2485 perm/sec)   p_kst 3.448276e-06   p_cons 3.448276e-06   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
BRAF   300000 perm   122 sec   (2468 perm/sec)   p_kst 3.333333e-06   p_cons 3.333333e-06   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
BRAF   310000 perm   127 sec   (2450 perm/sec)   p_kst 3.225806e-06   p_cons 3.225806e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
BRAF   320000 perm   132 sec   (2429 perm/sec)   p_kst 3.125000e-06   p_cons 3.125000e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
BRAF   330000 perm   137 sec   (2406 perm/sec)   p_kst 3.030303e-06   p_cons 3.030303e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
BRAF   340000 perm   143 sec   (2382 perm/sec)   p_kst 2.941176e-06   p_cons 2.941176e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
BRAF   350000 perm   148 sec   (2360 perm/sec)   p_kst 2.857143e-06   p_cons 2.857143e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
BRAF   360000 perm   155 sec   (2328 perm/sec)   p_kst 2.777778e-06   p_cons 2.777778e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
BRAF   370000 perm   161 sec   (2303 perm/sec)   p_kst 2.702703e-06   p_cons 2.702703e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
BRAF   380000 perm   166 sec   (2283 perm/sec)   p_kst 2.631579e-06   p_cons 2.631579e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
BRAF   390000 perm   172 sec   (2267 perm/sec)   p_kst 2.564103e-06   p_cons 2.564103e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
BRAF   400000 perm   178 sec   (2245 perm/sec)   p_kst 2.500000e-06   p_cons 2.500000e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
KS ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
BRAF   410000 perm   184 sec   (2226 perm/sec)   p_kst 2.439024e-06   p_cons 2.439024e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
KS ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
BRAF   420000 perm   191 sec   (2199 perm/sec)   p_kst 2.380952e-06   p_cons 2.380952e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
KS ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
BRAF   430000 perm   197 sec   (2178 perm/sec)   p_kst 2.325581e-06   p_cons 2.325581e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
KS ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
BRAF   440000 perm   206 sec   (2134 perm/sec)   p_kst 2.272727e-06   p_cons 2.272727e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
KS ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
BRAF   450000 perm   212 sec   (2118 perm/sec)   p_kst 2.222222e-06   p_cons 2.222222e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
KS ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
BRAF   460000 perm   219 sec   (2103 perm/sec)   p_kst 2.173913e-06   p_cons 2.173913e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
KS ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
BRAF   470000 perm   225 sec   (2088 perm/sec)   p_kst 2.127660e-06   p_cons 2.127660e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
KS ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
BRAF   480000 perm   232 sec   (2071 perm/sec)   p_kst 2.083333e-06   p_cons 2.083333e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
KS ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
BRAF   490000 perm   240 sec   (2043 perm/sec)   p_kst 2.040816e-06   p_cons 2.040816e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
KS ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
BRAF   500000 perm   248 sec   (2017 perm/sec)   p_kst 2.000000e-06   p_cons 2.000000e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
KS ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
BRAF   510000 perm   255 sec   (2002 perm/sec)   p_kst 1.960784e-06   p_cons 1.960784e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
KS ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
BRAF   520000 perm   262 sec   (1988 perm/sec)   p_kst 1.923077e-06   p_cons 1.923077e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
KS ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
BRAF   530000 perm   268 sec   (1975 perm/sec)   p_kst 1.886792e-06   p_cons 1.886792e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
KS ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
BRAF   540000 perm   275 sec   (1962 perm/sec)   p_kst 1.851852e-06   p_cons 1.851852e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
KS ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
BRAF   550000 perm   282 sec   (1950 perm/sec)   p_kst 1.818182e-06   p_cons 1.818182e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
BRAF   560000 perm   289 sec   (1937 perm/sec)   p_kst 1.785714e-06   p_cons 1.785714e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
BRAF   570000 perm   296 sec   (1924 perm/sec)   p_kst 1.754386e-06   p_cons 1.754386e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
BRAF   580000 perm   303 sec   (1911 perm/sec)   p_kst 1.724138e-06   p_cons 1.724138e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
BRAF   590000 perm   311 sec   (1899 perm/sec)   p_kst 1.694915e-06   p_cons 1.694915e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
BRAF   600000 perm   318 sec   (1887 perm/sec)   p_kst 1.666667e-06   p_cons 1.666667e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
BRAF   610000 perm   326 sec   (1874 perm/sec)   p_kst 1.639344e-06   p_cons 1.639344e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
BRAF   620000 perm   333 sec   (1861 perm/sec)   p_kst 1.612903e-06   p_cons 1.612903e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
BRAF   630000 perm   341 sec   (1846 perm/sec)   p_kst 1.587302e-06   p_cons 1.587302e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
BRAF   640000 perm   349 sec   (1834 perm/sec)   p_kst 1.562500e-06   p_cons 1.562500e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
BRAF   650000 perm   357 sec   (1821 perm/sec)   p_kst 1.538462e-06   p_cons 1.538462e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
BRAF   660000 perm   365 sec   (1807 perm/sec)   p_kst 1.515152e-06   p_cons 1.515152e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
BRAF   670000 perm   373 sec   (1794 perm/sec)   p_kst 1.492537e-06   p_cons 1.492537e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
BRAF   680000 perm   383 sec   (1776 perm/sec)   p_kst 1.470588e-06   p_cons 1.470588e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
BRAF   690000 perm   391 sec   (1765 perm/sec)   p_kst 1.449275e-06   p_cons 1.449275e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
BRAF   700000 perm   399 sec   (1752 perm/sec)   p_kst 1.428571e-06   p_cons 1.428571e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
BRAF   710000 perm   409 sec   (1738 perm/sec)   p_kst 1.408451e-06   p_cons 1.408451e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
BRAF   720000 perm   417 sec   (1725 perm/sec)   p_kst 1.388889e-06   p_cons 1.388889e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
BRAF   730000 perm   427 sec   (1711 perm/sec)   p_kst 1.369863e-06   p_cons 1.369863e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
BRAF   740000 perm   436 sec   (1698 perm/sec)   p_kst 1.351351e-06   p_cons 1.351351e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
BRAF   750000 perm   445 sec   (1684 perm/sec)   p_kst 1.333333e-06   p_cons 1.333333e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
BRAF   760000 perm   454 sec   (1675 perm/sec)   p_kst 1.315789e-06   p_cons 1.315789e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
BRAF   770000 perm   463 sec   (1664 perm/sec)   p_kst 1.298701e-06   p_cons 1.298701e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
BRAF   780000 perm   472 sec   (1653 perm/sec)   p_kst 1.282051e-06   p_cons 1.282051e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
BRAF   790000 perm   481 sec   (1643 perm/sec)   p_kst 1.265823e-06   p_cons 1.265823e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
BRAF   800000 perm   490 sec   (1633 perm/sec)   p_kst 1.250000e-06   p_cons 1.250000e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
BRAF   810000 perm   499 sec   (1623 perm/sec)   p_kst 1.234568e-06   p_cons 1.234568e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
BRAF   820000 perm   509 sec   (1612 perm/sec)   p_kst 1.219512e-06   p_cons 1.219512e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
BRAF   830000 perm   518 sec   (1601 perm/sec)   p_kst 1.204819e-06   p_cons 1.204819e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
BRAF   840000 perm   528 sec   (1591 perm/sec)   p_kst 1.190476e-06   p_cons 1.190476e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
BRAF   850000 perm   537 sec   (1582 perm/sec)   p_kst 1.176471e-06   p_cons 1.176471e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
BRAF   860000 perm   547 sec   (1571 perm/sec)   p_kst 1.162791e-06   p_cons 1.162791e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
BRAF   870000 perm   558 sec   (1559 perm/sec)   p_kst 1.149425e-06   p_cons 1.149425e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
BRAF   880000 perm   568 sec   (1549 perm/sec)   p_kst 1.136364e-06   p_cons 1.136364e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
BRAF   890000 perm   578 sec   (1539 perm/sec)   p_kst 1.123596e-06   p_cons 1.123596e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
BRAF   900000 perm   589 sec   (1529 perm/sec)   p_kst 1.111111e-06   p_cons 1.111111e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
BRAF   910000 perm   599 sec   (1519 perm/sec)   p_kst 1.098901e-06   p_cons 1.098901e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
BRAF   920000 perm   609 sec   (1510 perm/sec)   p_kst 1.086957e-06   p_cons 1.086957e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
BRAF   930000 perm   619 sec   (1502 perm/sec)   p_kst 1.075269e-06   p_cons 1.075269e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
BRAF   940000 perm   629 sec   (1494 perm/sec)   p_kst 1.063830e-06   p_cons 1.063830e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
BRAF   950000 perm   640 sec   (1485 perm/sec)   p_kst 1.052632e-06   p_cons 1.052632e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
BRAF   960000 perm   651 sec   (1474 perm/sec)   p_kst 1.041667e-06   p_cons 1.041667e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
BRAF   970000 perm   663 sec   (1462 perm/sec)   p_kst 1.030928e-06   p_cons 1.030928e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
BRAF   980000 perm   675 sec   (1453 perm/sec)   p_kst 1.020408e-06   p_cons 1.020408e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
BRAF   990000 perm   685 sec   (1445 perm/sec)   p_kst 1.010101e-06   p_cons 1.010101e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
BRAF   1000000 perm   696 sec   (1437 perm/sec)   p_kst 1.000000e-06   p_cons 1.000000e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
BRAF   1010000 perm   707 sec   (1429 perm/sec)   p_kst 9.900990e-07   p_cons 9.900990e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
BRAF   1020000 perm   720 sec   (1416 perm/sec)   p_kst 9.803922e-07   p_cons 9.803922e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
BRAF   1030000 perm   732 sec   (1406 perm/sec)   p_kst 9.708738e-07   p_cons 9.708738e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
BRAF   1040000 perm   744 sec   (1398 perm/sec)   p_kst 9.615385e-07   p_cons 9.615385e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
BRAF   1050000 perm   757 sec   (1388 perm/sec)   p_kst 9.523810e-07   p_cons 9.523810e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
BRAF   1060000 perm   768 sec   (1380 perm/sec)   p_kst 9.433962e-07   p_cons 9.433962e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
BRAF   1070000 perm   780 sec   (1372 perm/sec)   p_kst 9.345794e-07   p_cons 9.345794e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
BRAF   1080000 perm   794 sec   (1360 perm/sec)   p_kst 9.259259e-07   p_cons 9.259259e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
BRAF   1090000 perm   808 sec   (1350 perm/sec)   p_kst 9.174312e-07   p_cons 9.174312e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
BRAF   1100000 perm   821 sec   (1339 perm/sec)   p_kst 9.090909e-07   p_cons 9.090909e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
BRAF   1110000 perm   834 sec   (1331 perm/sec)   p_kst 9.009009e-07   p_cons 9.009009e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
BRAF   1120000 perm   846 sec   (1324 perm/sec)   p_kst 8.928571e-07   p_cons 8.928571e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
BRAF   1130000 perm   858 sec   (1317 perm/sec)   p_kst 8.849558e-07   p_cons 8.849558e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
BRAF   1140000 perm   870 sec   (1311 perm/sec)   p_kst 8.771930e-07   p_cons 8.771930e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
BRAF   1150000 perm   882 sec   (1304 perm/sec)   p_kst 8.695652e-07   p_cons 8.695652e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
BRAF   1160000 perm   894 sec   (1298 perm/sec)   p_kst 8.620690e-07   p_cons 8.620690e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
BRAF   1170000 perm   906 sec   (1292 perm/sec)   p_kst 8.547009e-07   p_cons 8.547009e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
BRAF   1180000 perm   918 sec   (1285 perm/sec)   p_kst 8.474576e-07   p_cons 8.474576e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
BRAF   1190000 perm   931 sec   (1279 perm/sec)   p_kst 8.403361e-07   p_cons 8.403361e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
BRAF   1200000 perm   943 sec   (1272 perm/sec)   p_kst 8.333333e-07   p_cons 8.333333e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
BRAF   1210000 perm   956 sec   (1266 perm/sec)   p_kst 8.264463e-07   p_cons 8.264463e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
BRAF   1220000 perm   970 sec   (1258 perm/sec)   p_kst 8.196721e-07   p_cons 8.196721e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
BRAF   1230000 perm   984 sec   (1250 perm/sec)   p_kst 8.130081e-07   p_cons 8.130081e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
BRAF   1240000 perm   997 sec   (1244 perm/sec)   p_kst 8.064516e-07   p_cons 8.064516e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
BRAF   1250000 perm   1010 sec   (1238 perm/sec)   p_kst 8.000000e-07   p_cons 8.000000e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
BRAF   1260000 perm   1023 sec   (1232 perm/sec)   p_kst 7.936508e-07   p_cons 7.936508e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
BRAF   1270000 perm   1036 sec   (1226 perm/sec)   p_kst 7.874016e-07   p_cons 7.874016e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
BRAF   1280000 perm   1049 sec   (1220 perm/sec)   p_kst 7.812500e-07   p_cons 7.812500e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
BRAF   1290000 perm   1063 sec   (1214 perm/sec)   p_kst 7.751938e-07   p_cons 7.751938e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
BRAF   1300000 perm   1076 sec   (1208 perm/sec)   p_kst 7.692308e-07   p_cons 7.692308e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
BRAF   1310000 perm   1089 sec   (1202 perm/sec)   p_kst 7.633588e-07   p_cons 7.633588e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
BRAF   1320000 perm   1103 sec   (1197 perm/sec)   p_kst 7.575758e-07   p_cons 7.575758e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
BRAF   1330000 perm   1117 sec   (1190 perm/sec)   p_kst 7.518797e-07   p_cons 7.518797e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
BRAF   1340000 perm   1131 sec   (1185 perm/sec)   p_kst 7.462687e-07   p_cons 7.462687e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
BRAF   1350000 perm   1145 sec   (1179 perm/sec)   p_kst 7.407407e-07   p_cons 7.407407e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
BRAF   1360000 perm   1158 sec   (1174 perm/sec)   p_kst 7.352941e-07   p_cons 7.352941e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
BRAF   1370000 perm   1173 sec   (1168 perm/sec)   p_kst 7.299270e-07   p_cons 7.299270e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
BRAF   1380000 perm   1187 sec   (1162 perm/sec)   p_kst 7.246377e-07   p_cons 7.246377e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
BRAF   1390000 perm   1201 sec   (1157 perm/sec)   p_kst 7.194245e-07   p_cons 7.194245e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
BRAF   1400000 perm   1216 sec   (1152 perm/sec)   p_kst 7.142857e-07   p_cons 7.142857e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
BRAF   1410000 perm   1231 sec   (1146 perm/sec)   p_kst 7.092199e-07   p_cons 7.092199e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
BRAF   1420000 perm   1245 sec   (1141 perm/sec)   p_kst 7.042254e-07   p_cons 7.042254e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
BRAF   1430000 perm   1260 sec   (1135 perm/sec)   p_kst 6.993007e-07   p_cons 6.993007e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
BRAF   1440000 perm   1275 sec   (1130 perm/sec)   p_kst 6.944444e-07   p_cons 6.944444e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
BRAF   1450000 perm   1290 sec   (1124 perm/sec)   p_kst 6.896552e-07   p_cons 6.896552e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
BRAF   1460000 perm   1306 sec   (1118 perm/sec)   p_kst 6.849315e-07   p_cons 6.849315e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
BRAF   1470000 perm   1322 sec   (1112 perm/sec)   p_kst 6.802721e-07   p_cons 6.802721e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
BRAF   1480000 perm   1337 sec   (1107 perm/sec)   p_kst 6.756757e-07   p_cons 6.756757e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
BRAF   1490000 perm   1352 sec   (1102 perm/sec)   p_kst 6.711409e-07   p_cons 6.711409e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
BRAF   1500000 perm   1367 sec   (1097 perm/sec)   p_kst 6.666667e-07   p_cons 6.666667e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
BRAF   1510000 perm   1383 sec   (1092 perm/sec)   p_kst 6.622517e-07   p_cons 6.622517e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
BRAF   1520000 perm   1399 sec   (1087 perm/sec)   p_kst 6.578947e-07   p_cons 6.578947e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
BRAF   1530000 perm   1414 sec   (1082 perm/sec)   p_kst 6.535948e-07   p_cons 6.535948e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
BRAF   1540000 perm   1431 sec   (1076 perm/sec)   p_kst 6.493506e-07   p_cons 6.493506e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
BRAF   1550000 perm   1447 sec   (1071 perm/sec)   p_kst 6.451613e-07   p_cons 6.451613e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
BRAF   1560000 perm   1463 sec   (1067 perm/sec)   p_kst 6.410256e-07   p_cons 6.410256e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
BRAF   1570000 perm   1480 sec   (1061 perm/sec)   p_kst 6.369427e-07   p_cons 6.369427e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
BRAF   1580000 perm   1495 sec   (1057 perm/sec)   p_kst 6.329114e-07   p_cons 6.329114e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
BRAF   1590000 perm   1512 sec   (1052 perm/sec)   p_kst 6.289308e-07   p_cons 6.289308e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
BRAF   1600000 perm   1528 sec   (1047 perm/sec)   p_kst 6.250000e-07   p_cons 6.250000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
BRAF   1610000 perm   1544 sec   (1042 perm/sec)   p_kst 6.211180e-07   p_cons 6.211180e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
BRAF   1620000 perm   1561 sec   (1038 perm/sec)   p_kst 6.172840e-07   p_cons 6.172840e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
BRAF   1630000 perm   1577 sec   (1034 perm/sec)   p_kst 6.134969e-07   p_cons 6.134969e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
BRAF   1640000 perm   1593 sec   (1029 perm/sec)   p_kst 6.097561e-07   p_cons 6.097561e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
BRAF   1650000 perm   1609 sec   (1025 perm/sec)   p_kst 6.060606e-07   p_cons 6.060606e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
BRAF   1660000 perm   1625 sec   (1021 perm/sec)   p_kst 6.024096e-07   p_cons 6.024096e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
BRAF   1670000 perm   1642 sec   (1017 perm/sec)   p_kst 5.988024e-07   p_cons 5.988024e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
BRAF   1680000 perm   1659 sec   (1013 perm/sec)   p_kst 5.952381e-07   p_cons 5.952381e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
BRAF   1690000 perm   1676 sec   (1008 perm/sec)   p_kst 5.917160e-07   p_cons 5.917160e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
BRAF   1700000 perm   1693 sec   (1004 perm/sec)   p_kst 5.882353e-07   p_cons 5.882353e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
BRAF   1710000 perm   1710 sec   (1000 perm/sec)   p_kst 5.847953e-07   p_cons 5.847953e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
KS ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
BRAF   1720000 perm   1726 sec   (996 perm/sec)   p_kst 5.813953e-07   p_cons 5.813953e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
KS ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
BRAF   1730000 perm   1744 sec   (992 perm/sec)   p_kst 5.780347e-07   p_cons 5.780347e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
KS ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
BRAF   1740000 perm   1761 sec   (988 perm/sec)   p_kst 5.747126e-07   p_cons 5.747126e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
KS ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
BRAF   1750000 perm   1778 sec   (984 perm/sec)   p_kst 5.714286e-07   p_cons 5.714286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
KS ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
BRAF   1760000 perm   1795 sec   (980 perm/sec)   p_kst 5.681818e-07   p_cons 5.681818e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
KS ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
BRAF   1770000 perm   1813 sec   (976 perm/sec)   p_kst 5.649718e-07   p_cons 5.649718e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
KS ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
BRAF   1780000 perm   1830 sec   (972 perm/sec)   p_kst 5.617978e-07   p_cons 5.617978e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
KS ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
BRAF   1790000 perm   1848 sec   (969 perm/sec)   p_kst 5.586592e-07   p_cons 5.586592e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
KS ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
BRAF   1800000 perm   1865 sec   (965 perm/sec)   p_kst 5.555556e-07   p_cons 5.555556e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
KS ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
BRAF   1810000 perm   1883 sec   (961 perm/sec)   p_kst 5.524862e-07   p_cons 5.524862e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
KS ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
BRAF   1820000 perm   1901 sec   (957 perm/sec)   p_kst 5.494505e-07   p_cons 5.494505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
KS ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
BRAF   1830000 perm   1920 sec   (953 perm/sec)   p_kst 5.464481e-07   p_cons 5.464481e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
KS ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
BRAF   1840000 perm   1938 sec   (949 perm/sec)   p_kst 5.434783e-07   p_cons 5.434783e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
KS ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
BRAF   1850000 perm   1957 sec   (945 perm/sec)   p_kst 5.405405e-07   p_cons 5.405405e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
KS ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
BRAF   1860000 perm   1976 sec   (941 perm/sec)   p_kst 5.376344e-07   p_cons 5.376344e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
KS ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
BRAF   1870000 perm   1994 sec   (938 perm/sec)   p_kst 5.347594e-07   p_cons 5.347594e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
KS ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
BRAF   1880000 perm   2012 sec   (934 perm/sec)   p_kst 5.319149e-07   p_cons 5.319149e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
KS ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
BRAF   1890000 perm   2030 sec   (931 perm/sec)   p_kst 5.291005e-07   p_cons 5.291005e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
KS ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
BRAF   1900000 perm   2050 sec   (927 perm/sec)   p_kst 5.263158e-07   p_cons 5.263158e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
KS ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
BRAF   1910000 perm   2069 sec   (923 perm/sec)   p_kst 5.235602e-07   p_cons 5.235602e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
KS ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
BRAF   1920000 perm   2087 sec   (920 perm/sec)   p_kst 5.208333e-07   p_cons 5.208333e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
KS ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
BRAF   1930000 perm   2107 sec   (916 perm/sec)   p_kst 5.181347e-07   p_cons 5.181347e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
KS ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
BRAF   1940000 perm   2126 sec   (912 perm/sec)   p_kst 5.154639e-07   p_cons 5.154639e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
KS ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
BRAF   1950000 perm   2146 sec   (909 perm/sec)   p_kst 5.128205e-07   p_cons 5.128205e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
KS ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
BRAF   1960000 perm   2165 sec   (905 perm/sec)   p_kst 5.102041e-07   p_cons 5.102041e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
KS ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
BRAF   1970000 perm   2184 sec   (902 perm/sec)   p_kst 5.076142e-07   p_cons 5.076142e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
KS ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
BRAF   1980000 perm   2203 sec   (899 perm/sec)   p_kst 5.050505e-07   p_cons 5.050505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
KS ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
BRAF   1990000 perm   2222 sec   (895 perm/sec)   p_kst 5.025126e-07   p_cons 5.025126e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
KS ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
BRAF   2000000 perm   2242 sec   (892 perm/sec)   p_kst 5.000000e-07   p_cons 5.000000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
KS ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
BRAF   2010000 perm   2263 sec   (888 perm/sec)   p_kst 4.975124e-07   p_cons 4.975124e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
KS ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
BRAF   2020000 perm   2283 sec   (885 perm/sec)   p_kst 4.950495e-07   p_cons 4.950495e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
KS ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
BRAF   2030000 perm   2304 sec   (881 perm/sec)   p_kst 4.926108e-07   p_cons 4.926108e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
KS ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
BRAF   2040000 perm   2324 sec   (878 perm/sec)   p_kst 4.901961e-07   p_cons 4.901961e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
KS ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
BRAF   2050000 perm   2345 sec   (874 perm/sec)   p_kst 4.878049e-07   p_cons 4.878049e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
KS ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
BRAF   2060000 perm   2365 sec   (871 perm/sec)   p_kst 4.854369e-07   p_cons 4.854369e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
KS ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
BRAF   2070000 perm   2387 sec   (867 perm/sec)   p_kst 4.830918e-07   p_cons 4.830918e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
KS ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
BRAF   2080000 perm   2409 sec   (864 perm/sec)   p_kst 4.807692e-07   p_cons 4.807692e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
KS ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
BRAF   2090000 perm   2429 sec   (861 perm/sec)   p_kst 4.784689e-07   p_cons 4.784689e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
KS ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
BRAF   2100000 perm   2449 sec   (858 perm/sec)   p_kst 4.761905e-07   p_cons 4.761905e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
KS ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
BRAF   2110000 perm   2469 sec   (855 perm/sec)   p_kst 4.739336e-07   p_cons 4.739336e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
KS ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
BRAF   2120000 perm   2490 sec   (851 perm/sec)   p_kst 4.716981e-07   p_cons 4.716981e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
KS ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
BRAF   2130000 perm   2511 sec   (848 perm/sec)   p_kst 4.694836e-07   p_cons 4.694836e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
KS ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
BRAF   2140000 perm   2532 sec   (845 perm/sec)   p_kst 4.672897e-07   p_cons 4.672897e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
KS ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
BRAF   2150000 perm   2553 sec   (842 perm/sec)   p_kst 4.651163e-07   p_cons 4.651163e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
KS ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
BRAF   2160000 perm   2573 sec   (840 perm/sec)   p_kst 4.629630e-07   p_cons 4.629630e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
KS ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
BRAF   2170000 perm   2593 sec   (837 perm/sec)   p_kst 4.608295e-07   p_cons 4.608295e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
KS ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
BRAF   2180000 perm   2614 sec   (834 perm/sec)   p_kst 4.587156e-07   p_cons 4.587156e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
KS ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
BRAF   2190000 perm   2635 sec   (831 perm/sec)   p_kst 4.566210e-07   p_cons 4.566210e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
KS ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
BRAF   2200000 perm   2656 sec   (828 perm/sec)   p_kst 4.545455e-07   p_cons 4.545455e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
KS ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
BRAF   2210000 perm   2677 sec   (826 perm/sec)   p_kst 4.524887e-07   p_cons 4.524887e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
KS ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
BRAF   2220000 perm   2699 sec   (822 perm/sec)   p_kst 4.504505e-07   p_cons 4.504505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
KS ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
BRAF   2230000 perm   2721 sec   (820 perm/sec)   p_kst 4.484305e-07   p_cons 4.484305e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
KS ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
BRAF   2240000 perm   2742 sec   (817 perm/sec)   p_kst 4.464286e-07   p_cons 4.464286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
KS ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
BRAF   2250000 perm   2764 sec   (814 perm/sec)   p_kst 4.444444e-07   p_cons 4.444444e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
KS ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
BRAF   2260000 perm   2786 sec   (811 perm/sec)   p_kst 4.424779e-07   p_cons 4.424779e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
KS ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
BRAF   2270000 perm   2808 sec   (809 perm/sec)   p_kst 4.405286e-07   p_cons 4.405286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
KS ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
BRAF   2280000 perm   2829 sec   (806 perm/sec)   p_kst 4.385965e-07   p_cons 4.385965e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
KS ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
BRAF   2290000 perm   2852 sec   (803 perm/sec)   p_kst 4.366812e-07   p_cons 4.366812e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
KS ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
BRAF   2300000 perm   2874 sec   (800 perm/sec)   p_kst 4.347826e-07   p_cons 4.347826e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
KS ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
BRAF   2310000 perm   2896 sec   (798 perm/sec)   p_kst 4.329004e-07   p_cons 4.329004e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
KS ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
BRAF   2320000 perm   2918 sec   (795 perm/sec)   p_kst 4.310345e-07   p_cons 4.310345e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
KS ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
BRAF   2330000 perm   2940 sec   (793 perm/sec)   p_kst 4.291845e-07   p_cons 4.291845e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
KS ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
BRAF   2340000 perm   2962 sec   (790 perm/sec)   p_kst 4.273504e-07   p_cons 4.273504e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
KS ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
BRAF   2350000 perm   2985 sec   (787 perm/sec)   p_kst 4.255319e-07   p_cons 4.255319e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
KS ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
BRAF   2360000 perm   3007 sec   (785 perm/sec)   p_kst 4.237288e-07   p_cons 4.237288e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
KS ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
BRAF   2370000 perm   3029 sec   (782 perm/sec)   p_kst 4.219409e-07   p_cons 4.219409e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
KS ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
BRAF   2380000 perm   3052 sec   (780 perm/sec)   p_kst 4.201681e-07   p_cons 4.201681e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
KS ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
BRAF   2390000 perm   3074 sec   (777 perm/sec)   p_kst 4.184100e-07   p_cons 4.184100e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
KS ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
BRAF   2400000 perm   3096 sec   (775 perm/sec)   p_kst 4.166667e-07   p_cons 4.166667e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
KS ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
BRAF   2410000 perm   3119 sec   (773 perm/sec)   p_kst 4.149378e-07   p_cons 4.149378e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
KS ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
BRAF   2420000 perm   3141 sec   (770 perm/sec)   p_kst 4.132231e-07   p_cons 4.132231e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
KS ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
BRAF   2430000 perm   3163 sec   (768 perm/sec)   p_kst 4.115226e-07   p_cons 4.115226e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
KS ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
BRAF   2440000 perm   3186 sec   (766 perm/sec)   p_kst 4.098361e-07   p_cons 4.098361e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
KS ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
BRAF   2450000 perm   3209 sec   (763 perm/sec)   p_kst 4.081633e-07   p_cons 4.081633e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
KS ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
BRAF   2460000 perm   3232 sec   (761 perm/sec)   p_kst 4.065041e-07   p_cons 4.065041e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
KS ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
BRAF   2470000 perm   3256 sec   (759 perm/sec)   p_kst 4.048583e-07   p_cons 4.048583e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
KS ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
BRAF   2480000 perm   3279 sec   (756 perm/sec)   p_kst 4.032258e-07   p_cons 4.032258e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
KS ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
BRAF   2490000 perm   3303 sec   (754 perm/sec)   p_kst 4.016064e-07   p_cons 4.016064e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
KS ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
BRAF   2500000 perm   3326 sec   (752 perm/sec)   p_kst 4.000000e-07   p_cons 4.000000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
KS ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
BRAF   2510000 perm   3350 sec   (749 perm/sec)   p_kst 3.984064e-07   p_cons 3.984064e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
KS ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
BRAF   2520000 perm   3374 sec   (747 perm/sec)   p_kst 3.968254e-07   p_cons 3.968254e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
KS ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
BRAF   2530000 perm   3397 sec   (745 perm/sec)   p_kst 3.952569e-07   p_cons 3.952569e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
KS ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
BRAF   2540000 perm   3421 sec   (742 perm/sec)   p_kst 3.937008e-07   p_cons 3.937008e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
KS ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
BRAF   2550000 perm   3445 sec   (740 perm/sec)   p_kst 3.921569e-07   p_cons 3.921569e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
KS ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
BRAF   2560000 perm   3469 sec   (738 perm/sec)   p_kst 3.906250e-07   p_cons 3.906250e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
KS ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
BRAF   2570000 perm   3493 sec   (736 perm/sec)   p_kst 3.891051e-07   p_cons 3.891051e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
KS ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
BRAF   2580000 perm   3518 sec   (733 perm/sec)   p_kst 3.875969e-07   p_cons 3.875969e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
KS ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
BRAF   2590000 perm   3542 sec   (731 perm/sec)   p_kst 3.861004e-07   p_cons 3.861004e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
KS ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
BRAF   2600000 perm   3566 sec   (729 perm/sec)   p_kst 3.846154e-07   p_cons 3.846154e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
KS ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
BRAF   2610000 perm   3591 sec   (727 perm/sec)   p_kst 3.831418e-07   p_cons 3.831418e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
KS ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
BRAF   2620000 perm   3614 sec   (725 perm/sec)   p_kst 3.816794e-07   p_cons 3.816794e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
KS ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
BRAF   2630000 perm   3639 sec   (723 perm/sec)   p_kst 3.802281e-07   p_cons 3.802281e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
KS ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
BRAF   2640000 perm   3663 sec   (721 perm/sec)   p_kst 3.787879e-07   p_cons 3.787879e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
KS ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
BRAF   2650000 perm   3688 sec   (719 perm/sec)   p_kst 3.773585e-07   p_cons 3.773585e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
KS ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
BRAF   2660000 perm   3712 sec   (717 perm/sec)   p_kst 3.759398e-07   p_cons 3.759398e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
KS ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
BRAF   2670000 perm   3737 sec   (715 perm/sec)   p_kst 3.745318e-07   p_cons 3.745318e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
KS ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
BRAF   2680000 perm   3762 sec   (712 perm/sec)   p_kst 3.731343e-07   p_cons 3.731343e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
KS ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
BRAF   2690000 perm   3787 sec   (710 perm/sec)   p_kst 3.717472e-07   p_cons 3.717472e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
KS ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
BRAF   2700000 perm   3812 sec   (708 perm/sec)   p_kst 3.703704e-07   p_cons 3.703704e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
KS ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
BRAF   2710000 perm   3837 sec   (706 perm/sec)   p_kst 3.690037e-07   p_cons 3.690037e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
KS ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
BRAF   2720000 perm   3863 sec   (704 perm/sec)   p_kst 3.676471e-07   p_cons 3.676471e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
KS ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
BRAF   2730000 perm   3888 sec   (702 perm/sec)   p_kst 3.663004e-07   p_cons 3.663004e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
KS ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
BRAF   2740000 perm   3914 sec   (700 perm/sec)   p_kst 3.649635e-07   p_cons 3.649635e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
KS ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
BRAF   2750000 perm   3939 sec   (698 perm/sec)   p_kst 3.636364e-07   p_cons 3.636364e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
KS ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
BRAF   2760000 perm   3965 sec   (696 perm/sec)   p_kst 3.623188e-07   p_cons 3.623188e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
KS ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
BRAF   2770000 perm   3991 sec   (694 perm/sec)   p_kst 3.610108e-07   p_cons 3.610108e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
KS ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
BRAF   2780000 perm   4017 sec   (692 perm/sec)   p_kst 3.597122e-07   p_cons 3.597122e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
KS ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
BRAF   2790000 perm   4043 sec   (690 perm/sec)   p_kst 3.584229e-07   p_cons 3.584229e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
KS ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
BRAF   2800000 perm   4069 sec   (688 perm/sec)   p_kst 3.571429e-07   p_cons 3.571429e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
KS ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
BRAF   2810000 perm   4095 sec   (686 perm/sec)   p_kst 3.558719e-07   p_cons 3.558719e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
KS ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
BRAF   2820000 perm   4121 sec   (684 perm/sec)   p_kst 3.546099e-07   p_cons 3.546099e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
KS ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
BRAF   2830000 perm   4147 sec   (682 perm/sec)   p_kst 3.533569e-07   p_cons 3.533569e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
KS ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
BRAF   2840000 perm   4173 sec   (681 perm/sec)   p_kst 3.521127e-07   p_cons 3.521127e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
KS ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
BRAF   2850000 perm   4200 sec   (679 perm/sec)   p_kst 3.508772e-07   p_cons 3.508772e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
KS ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
BRAF   2860000 perm   4226 sec   (677 perm/sec)   p_kst 3.496503e-07   p_cons 3.496503e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
KS ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
BRAF   2870000 perm   4253 sec   (675 perm/sec)   p_kst 3.484321e-07   p_cons 3.484321e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
KS ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
BRAF   2880000 perm   4280 sec   (673 perm/sec)   p_kst 3.472222e-07   p_cons 3.472222e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
KS ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
BRAF   2890000 perm   4307 sec   (671 perm/sec)   p_kst 3.460208e-07   p_cons 3.460208e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
KS ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
BRAF   2900000 perm   4333 sec   (669 perm/sec)   p_kst 3.448276e-07   p_cons 3.448276e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
KS ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
BRAF   2910000 perm   4360 sec   (667 perm/sec)   p_kst 3.436426e-07   p_cons 3.436426e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
KS ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
BRAF   2920000 perm   4387 sec   (666 perm/sec)   p_kst 3.424658e-07   p_cons 3.424658e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
KS ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
BRAF   2930000 perm   4414 sec   (664 perm/sec)   p_kst 3.412969e-07   p_cons 3.412969e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
KS ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
BRAF   2940000 perm   4442 sec   (662 perm/sec)   p_kst 3.401361e-07   p_cons 3.401361e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
KS ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
BRAF   2950000 perm   4469 sec   (660 perm/sec)   p_kst 3.389831e-07   p_cons 3.389831e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
KS ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
BRAF   2960000 perm   4497 sec   (658 perm/sec)   p_kst 3.378378e-07   p_cons 3.378378e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
KS ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
BRAF   2970000 perm   4524 sec   (656 perm/sec)   p_kst 3.367003e-07   p_cons 3.367003e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
KS ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
BRAF   2980000 perm   4552 sec   (655 perm/sec)   p_kst 3.355705e-07   p_cons 3.355705e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
KS ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
BRAF   2990000 perm   4580 sec   (653 perm/sec)   p_kst 3.344482e-07   p_cons 3.344482e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
KS ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
BRAF   3000000 perm   4608 sec   (651 perm/sec)   p_kst 3.333333e-07   p_cons 3.333333e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
KS ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
BRAF   3010000 perm   4636 sec   (649 perm/sec)   p_kst 3.322259e-07   p_cons 3.322259e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
KS ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
BRAF   3020000 perm   4665 sec   (647 perm/sec)   p_kst 3.311258e-07   p_cons 3.311258e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
KS ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
BRAF   3030000 perm   4693 sec   (646 perm/sec)   p_kst 3.300330e-07   p_cons 3.300330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
KS ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
BRAF   3040000 perm   4722 sec   (644 perm/sec)   p_kst 3.289474e-07   p_cons 3.289474e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
KS ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
BRAF   3050000 perm   4751 sec   (642 perm/sec)   p_kst 3.278689e-07   p_cons 3.278689e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
KS ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
BRAF   3060000 perm   4779 sec   (640 perm/sec)   p_kst 3.267974e-07   p_cons 3.267974e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
KS ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
BRAF   3070000 perm   4808 sec   (639 perm/sec)   p_kst 3.257329e-07   p_cons 3.257329e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
KS ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
BRAF   3080000 perm   4836 sec   (637 perm/sec)   p_kst 3.246753e-07   p_cons 3.246753e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
KS ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
BRAF   3090000 perm   4865 sec   (635 perm/sec)   p_kst 3.236246e-07   p_cons 3.236246e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
KS ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
BRAF   3100000 perm   4894 sec   (633 perm/sec)   p_kst 3.225806e-07   p_cons 3.225806e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 2.771857e+00	ci left: 8.140774e-09	ci right 1.791524e-06	k: 1	n:3110000
KS ci ratio: 2.771857e+00	ci left: 8.140774e-09	ci right 1.791524e-06	k: 1	n:3110000
BRAF   3110000 perm   4924 sec   (632 perm/sec)   p_kst 3.215434e-07   p_cons 3.215434e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 2.771857e+00	ci left: 8.114682e-09	ci right 1.785782e-06	k: 1	n:3120000
KS ci ratio: 2.771857e+00	ci left: 8.114682e-09	ci right 1.785782e-06	k: 1	n:3120000
BRAF   3120000 perm   4953 sec   (630 perm/sec)   p_kst 3.205128e-07   p_cons 3.205128e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 2.771857e+00	ci left: 8.088757e-09	ci right 1.780076e-06	k: 1	n:3130000
KS ci ratio: 2.771857e+00	ci left: 8.088757e-09	ci right 1.780076e-06	k: 1	n:3130000
BRAF   3130000 perm   4981 sec   (628 perm/sec)   p_kst 3.194888e-07   p_cons 3.194888e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 2.771857e+00	ci left: 8.062996e-09	ci right 1.774407e-06	k: 1	n:3140000
KS ci ratio: 2.771857e+00	ci left: 8.062996e-09	ci right 1.774407e-06	k: 1	n:3140000
BRAF   3140000 perm   5011 sec   (627 perm/sec)   p_kst 3.184713e-07   p_cons 3.184713e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 2.771857e+00	ci left: 8.037399e-09	ci right 1.768774e-06	k: 1	n:3150000
KS ci ratio: 2.771857e+00	ci left: 8.037399e-09	ci right 1.768774e-06	k: 1	n:3150000
BRAF   3150000 perm   5039 sec   (625 perm/sec)   p_kst 3.174603e-07   p_cons 3.174603e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 2.771857e+00	ci left: 8.011965e-09	ci right 1.763177e-06	k: 1	n:3160000
KS ci ratio: 2.771857e+00	ci left: 8.011965e-09	ci right 1.763177e-06	k: 1	n:3160000
BRAF   3160000 perm   5068 sec   (623 perm/sec)   p_kst 3.164557e-07   p_cons 3.164557e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 2.771857e+00	ci left: 7.986690e-09	ci right 1.757615e-06	k: 1	n:3170000
KS ci ratio: 2.771857e+00	ci left: 7.986690e-09	ci right 1.757615e-06	k: 1	n:3170000
BRAF   3170000 perm   5098 sec   (622 perm/sec)   p_kst 3.154574e-07   p_cons 3.154574e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 2.771857e+00	ci left: 7.961575e-09	ci right 1.752088e-06	k: 1	n:3180000
KS ci ratio: 2.771857e+00	ci left: 7.961575e-09	ci right 1.752088e-06	k: 1	n:3180000
BRAF   3180000 perm   5127 sec   (620 perm/sec)   p_kst 3.144654e-07   p_cons 3.144654e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 2.771857e+00	ci left: 7.936617e-09	ci right 1.746595e-06	k: 1	n:3190000
KS ci ratio: 2.771857e+00	ci left: 7.936617e-09	ci right 1.746595e-06	k: 1	n:3190000
BRAF   3190000 perm   5157 sec   (619 perm/sec)   p_kst 3.134796e-07   p_cons 3.134796e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 2.771857e+00	ci left: 7.911815e-09	ci right 1.741137e-06	k: 1	n:3200000
KS ci ratio: 2.771857e+00	ci left: 7.911815e-09	ci right 1.741137e-06	k: 1	n:3200000
BRAF   3200000 perm   5187 sec   (617 perm/sec)   p_kst 3.125000e-07   p_cons 3.125000e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 2.771857e+00	ci left: 7.887168e-09	ci right 1.735713e-06	k: 1	n:3210000
KS ci ratio: 2.771857e+00	ci left: 7.887168e-09	ci right 1.735713e-06	k: 1	n:3210000
BRAF   3210000 perm   5217 sec   (615 perm/sec)   p_kst 3.115265e-07   p_cons 3.115265e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 2.771857e+00	ci left: 7.862673e-09	ci right 1.730323e-06	k: 1	n:3220000
KS ci ratio: 2.771857e+00	ci left: 7.862673e-09	ci right 1.730323e-06	k: 1	n:3220000
BRAF   3220000 perm   5247 sec   (614 perm/sec)   p_kst 3.105590e-07   p_cons 3.105590e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 2.771857e+00	ci left: 7.838331e-09	ci right 1.724966e-06	k: 1	n:3230000
KS ci ratio: 2.771857e+00	ci left: 7.838331e-09	ci right 1.724966e-06	k: 1	n:3230000
BRAF   3230000 perm   5277 sec   (612 perm/sec)   p_kst 3.095975e-07   p_cons 3.095975e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 2.771857e+00	ci left: 7.814138e-09	ci right 1.719642e-06	k: 1	n:3240000
KS ci ratio: 2.771857e+00	ci left: 7.814138e-09	ci right 1.719642e-06	k: 1	n:3240000
BRAF   3240000 perm   5306 sec   (611 perm/sec)   p_kst 3.086420e-07   p_cons 3.086420e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 2.771857e+00	ci left: 7.790095e-09	ci right 1.714351e-06	k: 1	n:3250000
KS ci ratio: 2.771857e+00	ci left: 7.790095e-09	ci right 1.714351e-06	k: 1	n:3250000
BRAF   3250000 perm   5336 sec   (609 perm/sec)   p_kst 3.076923e-07   p_cons 3.076923e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 2.771857e+00	ci left: 7.766199e-09	ci right 1.709092e-06	k: 1	n:3260000
KS ci ratio: 2.771857e+00	ci left: 7.766199e-09	ci right 1.709092e-06	k: 1	n:3260000
BRAF   3260000 perm   5366 sec   (608 perm/sec)   p_kst 3.067485e-07   p_cons 3.067485e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 2.771857e+00	ci left: 7.742449e-09	ci right 1.703865e-06	k: 1	n:3270000
KS ci ratio: 2.771857e+00	ci left: 7.742449e-09	ci right 1.703865e-06	k: 1	n:3270000
BRAF   3270000 perm   5396 sec   (606 perm/sec)   p_kst 3.058104e-07   p_cons 3.058104e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 2.771857e+00	ci left: 7.718844e-09	ci right 1.698671e-06	k: 1	n:3280000
KS ci ratio: 2.771857e+00	ci left: 7.718844e-09	ci right 1.698671e-06	k: 1	n:3280000
BRAF   3280000 perm   5427 sec   (604 perm/sec)   p_kst 3.048780e-07   p_cons 3.048780e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 2.771857e+00	ci left: 7.695382e-09	ci right 1.693507e-06	k: 1	n:3290000
KS ci ratio: 2.771857e+00	ci left: 7.695382e-09	ci right 1.693507e-06	k: 1	n:3290000
BRAF   3290000 perm   5458 sec   (603 perm/sec)   p_kst 3.039514e-07   p_cons 3.039514e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 2.771857e+00	ci left: 7.672063e-09	ci right 1.688376e-06	k: 1	n:3300000
KS ci ratio: 2.771857e+00	ci left: 7.672063e-09	ci right 1.688376e-06	k: 1	n:3300000
BRAF   3300000 perm   5488 sec   (601 perm/sec)   p_kst 3.030303e-07   p_cons 3.030303e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 2.771857e+00	ci left: 7.648885e-09	ci right 1.683275e-06	k: 1	n:3310000
KS ci ratio: 2.771857e+00	ci left: 7.648885e-09	ci right 1.683275e-06	k: 1	n:3310000
BRAF   3310000 perm   5518 sec   (600 perm/sec)   p_kst 3.021148e-07   p_cons 3.021148e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 2.771857e+00	ci left: 7.625846e-09	ci right 1.678205e-06	k: 1	n:3320000
KS ci ratio: 2.771857e+00	ci left: 7.625846e-09	ci right 1.678205e-06	k: 1	n:3320000
BRAF   3320000 perm   5549 sec   (598 perm/sec)   p_kst 3.012048e-07   p_cons 3.012048e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 2.771857e+00	ci left: 7.602945e-09	ci right 1.673165e-06	k: 1	n:3330000
KS ci ratio: 2.771857e+00	ci left: 7.602945e-09	ci right 1.673165e-06	k: 1	n:3330000
BRAF   3330000 perm   5579 sec   (597 perm/sec)   p_kst 3.003003e-07   p_cons 3.003003e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 2.771857e+00	ci left: 7.580182e-09	ci right 1.668156e-06	k: 1	n:3340000
KS ci ratio: 2.771857e+00	ci left: 7.580182e-09	ci right 1.668156e-06	k: 1	n:3340000
BRAF   3340000 perm   5610 sec   (595 perm/sec)   p_kst 2.994012e-07   p_cons 2.994012e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 2.771857e+00	ci left: 7.557555e-09	ci right 1.663176e-06	k: 1	n:3350000
KS ci ratio: 2.771857e+00	ci left: 7.557555e-09	ci right 1.663176e-06	k: 1	n:3350000
BRAF   3350000 perm   5642 sec   (594 perm/sec)   p_kst 2.985075e-07   p_cons 2.985075e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
KS ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
BRAF   3360000 perm   5672 sec   (592 perm/sec)   p_kst 2.976190e-07   p_cons 2.976190e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
KS ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
BRAF   3370000 perm   5703 sec   (591 perm/sec)   p_kst 2.967359e-07   p_cons 2.967359e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
KS ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
BRAF   3380000 perm   5734 sec   (589 perm/sec)   p_kst 2.958580e-07   p_cons 2.958580e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
KS ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
BRAF   3390000 perm   5765 sec   (588 perm/sec)   p_kst 2.949853e-07   p_cons 2.949853e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
KS ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
BRAF   3400000 perm   5796 sec   (587 perm/sec)   p_kst 2.941176e-07   p_cons 2.941176e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
KS ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
BRAF   3410000 perm   5827 sec   (585 perm/sec)   p_kst 2.932551e-07   p_cons 2.932551e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
KS ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
BRAF   3420000 perm   5858 sec   (584 perm/sec)   p_kst 2.923977e-07   p_cons 2.923977e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
KS ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
BRAF   3430000 perm   5890 sec   (582 perm/sec)   p_kst 2.915452e-07   p_cons 2.915452e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
KS ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
BRAF   3440000 perm   5921 sec   (581 perm/sec)   p_kst 2.906977e-07   p_cons 2.906977e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
KS ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
BRAF   3450000 perm   5953 sec   (580 perm/sec)   p_kst 2.898551e-07   p_cons 2.898551e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
KS ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
BRAF   3460000 perm   5985 sec   (578 perm/sec)   p_kst 2.890173e-07   p_cons 2.890173e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
KS ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
BRAF   3470000 perm   6017 sec   (577 perm/sec)   p_kst 2.881844e-07   p_cons 2.881844e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
KS ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
BRAF   3480000 perm   6049 sec   (575 perm/sec)   p_kst 2.873563e-07   p_cons 2.873563e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
KS ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
BRAF   3490000 perm   6081 sec   (574 perm/sec)   p_kst 2.865330e-07   p_cons 2.865330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
KS ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
BRAF   3500000 perm   6113 sec   (573 perm/sec)   p_kst 2.857143e-07   p_cons 2.857143e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
KS ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
BRAF   3510000 perm   6146 sec   (571 perm/sec)   p_kst 2.849003e-07   p_cons 2.849003e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
KS ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
BRAF   3520000 perm   6179 sec   (570 perm/sec)   p_kst 2.840909e-07   p_cons 2.840909e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
KS ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
BRAF   3530000 perm   6211 sec   (568 perm/sec)   p_kst 2.832861e-07   p_cons 2.832861e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
KS ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
BRAF   3540000 perm   6244 sec   (567 perm/sec)   p_kst 2.824859e-07   p_cons 2.824859e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
KS ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
BRAF   3550000 perm   6277 sec   (566 perm/sec)   p_kst 2.816901e-07   p_cons 2.816901e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
KS ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
BRAF   3560000 perm   6309 sec   (564 perm/sec)   p_kst 2.808989e-07   p_cons 2.808989e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
KS ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
BRAF   3570000 perm   6343 sec   (563 perm/sec)   p_kst 2.801120e-07   p_cons 2.801120e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
KS ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
BRAF   3580000 perm   6375 sec   (562 perm/sec)   p_kst 2.793296e-07   p_cons 2.793296e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
KS ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
BRAF   3590000 perm   6408 sec   (560 perm/sec)   p_kst 2.785515e-07   p_cons 2.785515e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
KS ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
BRAF   3600000 perm   6441 sec   (559 perm/sec)   p_kst 2.777778e-07   p_cons 2.777778e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
KS ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
BRAF   3610000 perm   6474 sec   (558 perm/sec)   p_kst 2.770083e-07   p_cons 2.770083e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
KS ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
BRAF   3620000 perm   6507 sec   (556 perm/sec)   p_kst 2.762431e-07   p_cons 2.762431e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
KS ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
BRAF   3630000 perm   6540 sec   (555 perm/sec)   p_kst 2.754821e-07   p_cons 2.754821e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
KS ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
BRAF   3640000 perm   6574 sec   (554 perm/sec)   p_kst 2.747253e-07   p_cons 2.747253e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
KS ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
BRAF   3650000 perm   6608 sec   (552 perm/sec)   p_kst 2.739726e-07   p_cons 2.739726e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
KS ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
BRAF   3660000 perm   6641 sec   (551 perm/sec)   p_kst 2.732240e-07   p_cons 2.732240e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
KS ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
BRAF   3670000 perm   6675 sec   (550 perm/sec)   p_kst 2.724796e-07   p_cons 2.724796e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
KS ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
BRAF   3680000 perm   6708 sec   (549 perm/sec)   p_kst 2.717391e-07   p_cons 2.717391e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
KS ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
BRAF   3690000 perm   6742 sec   (547 perm/sec)   p_kst 2.710027e-07   p_cons 2.710027e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
KS ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
BRAF   3700000 perm   6775 sec   (546 perm/sec)   p_kst 2.702703e-07   p_cons 2.702703e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
KS ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
BRAF   3710000 perm   6809 sec   (545 perm/sec)   p_kst 2.695418e-07   p_cons 2.695418e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
KS ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
BRAF   3720000 perm   6843 sec   (544 perm/sec)   p_kst 2.688172e-07   p_cons 2.688172e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
KS ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
BRAF   3730000 perm   6877 sec   (542 perm/sec)   p_kst 2.680965e-07   p_cons 2.680965e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
KS ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
BRAF   3740000 perm   6911 sec   (541 perm/sec)   p_kst 2.673797e-07   p_cons 2.673797e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
KS ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
BRAF   3750000 perm   6945 sec   (540 perm/sec)   p_kst 2.666667e-07   p_cons 2.666667e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
KS ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
BRAF   3760000 perm   6979 sec   (539 perm/sec)   p_kst 2.659574e-07   p_cons 2.659574e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
KS ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
BRAF   3770000 perm   7013 sec   (538 perm/sec)   p_kst 2.652520e-07   p_cons 2.652520e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
KS ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
BRAF   3780000 perm   7048 sec   (536 perm/sec)   p_kst 2.645503e-07   p_cons 2.645503e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
KS ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
BRAF   3790000 perm   7083 sec   (535 perm/sec)   p_kst 2.638522e-07   p_cons 2.638522e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
KS ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
BRAF   3800000 perm   7117 sec   (534 perm/sec)   p_kst 2.631579e-07   p_cons 2.631579e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
KS ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
BRAF   3810000 perm   7152 sec   (533 perm/sec)   p_kst 2.624672e-07   p_cons 2.624672e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
KS ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
BRAF   3820000 perm   7186 sec   (532 perm/sec)   p_kst 2.617801e-07   p_cons 2.617801e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
KS ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
BRAF   3830000 perm   7222 sec   (530 perm/sec)   p_kst 2.610966e-07   p_cons 2.610966e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
KS ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
BRAF   3840000 perm   7257 sec   (529 perm/sec)   p_kst 2.604167e-07   p_cons 2.604167e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
KS ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
BRAF   3850000 perm   7293 sec   (528 perm/sec)   p_kst 2.597403e-07   p_cons 2.597403e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
KS ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
BRAF   3860000 perm   7329 sec   (527 perm/sec)   p_kst 2.590674e-07   p_cons 2.590674e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
KS ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
BRAF   3870000 perm   7364 sec   (526 perm/sec)   p_kst 2.583979e-07   p_cons 2.583979e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
KS ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
BRAF   3880000 perm   7399 sec   (524 perm/sec)   p_kst 2.577320e-07   p_cons 2.577320e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
KS ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
BRAF   3890000 perm   7435 sec   (523 perm/sec)   p_kst 2.570694e-07   p_cons 2.570694e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
KS ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
BRAF   3900000 perm   7470 sec   (522 perm/sec)   p_kst 2.564103e-07   p_cons 2.564103e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
KS ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
BRAF   3910000 perm   7506 sec   (521 perm/sec)   p_kst 2.557545e-07   p_cons 2.557545e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 2.771858e+00	ci left: 6.458624e-09	ci right 1.421337e-06	k: 1	n:3920000
KS ci ratio: 2.771858e+00	ci left: 6.458624e-09	ci right 1.421337e-06	k: 1	n:3920000
BRAF   3920000 perm   7541 sec   (520 perm/sec)   p_kst 2.551020e-07   p_cons 2.551020e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 2.771858e+00	ci left: 6.442190e-09	ci right 1.417720e-06	k: 1	n:3930000
KS ci ratio: 2.771858e+00	ci left: 6.442190e-09	ci right 1.417720e-06	k: 1	n:3930000
BRAF   3930000 perm   7576 sec   (519 perm/sec)   p_kst 2.544529e-07   p_cons 2.544529e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 2.771858e+00	ci left: 6.425839e-09	ci right 1.414122e-06	k: 1	n:3940000
KS ci ratio: 2.771858e+00	ci left: 6.425839e-09	ci right 1.414122e-06	k: 1	n:3940000
BRAF   3940000 perm   7613 sec   (518 perm/sec)   p_kst 2.538071e-07   p_cons 2.538071e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 2.771858e+00	ci left: 6.409572e-09	ci right 1.410542e-06	k: 1	n:3950000
KS ci ratio: 2.771858e+00	ci left: 6.409572e-09	ci right 1.410542e-06	k: 1	n:3950000
BRAF   3950000 perm   7648 sec   (516 perm/sec)   p_kst 2.531646e-07   p_cons 2.531646e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 2.771858e+00	ci left: 6.393386e-09	ci right 1.406980e-06	k: 1	n:3960000
KS ci ratio: 2.771858e+00	ci left: 6.393386e-09	ci right 1.406980e-06	k: 1	n:3960000
BRAF   3960000 perm   7685 sec   (515 perm/sec)   p_kst 2.525253e-07   p_cons 2.525253e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 2.771858e+00	ci left: 6.377281e-09	ci right 1.403436e-06	k: 1	n:3970000
KS ci ratio: 2.771858e+00	ci left: 6.377281e-09	ci right 1.403436e-06	k: 1	n:3970000
BRAF   3970000 perm   7721 sec   (514 perm/sec)   p_kst 2.518892e-07   p_cons 2.518892e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 2.771858e+00	ci left: 6.361258e-09	ci right 1.399910e-06	k: 1	n:3980000
KS ci ratio: 2.771858e+00	ci left: 6.361258e-09	ci right 1.399910e-06	k: 1	n:3980000
BRAF   3980000 perm   7757 sec   (513 perm/sec)   p_kst 2.512563e-07   p_cons 2.512563e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 2.771858e+00	ci left: 6.345315e-09	ci right 1.396401e-06	k: 1	n:3990000
KS ci ratio: 2.771858e+00	ci left: 6.345315e-09	ci right 1.396401e-06	k: 1	n:3990000
BRAF   3990000 perm   7794 sec   (512 perm/sec)   p_kst 2.506266e-07   p_cons 2.506266e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 2.771858e+00	ci left: 6.329452e-09	ci right 1.392910e-06	k: 1	n:4000000
KS ci ratio: 2.771858e+00	ci left: 6.329452e-09	ci right 1.392910e-06	k: 1	n:4000000
BRAF   4000000 perm   7831 sec   (511 perm/sec)   p_kst 2.500000e-07   p_cons 2.500000e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 2.771858e+00	ci left: 6.313668e-09	ci right 1.389436e-06	k: 1	n:4010000
KS ci ratio: 2.771858e+00	ci left: 6.313668e-09	ci right 1.389436e-06	k: 1	n:4010000
BRAF   4010000 perm   7868 sec   (510 perm/sec)   p_kst 2.493766e-07   p_cons 2.493766e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 2.771858e+00	ci left: 6.297962e-09	ci right 1.385980e-06	k: 1	n:4020000
KS ci ratio: 2.771858e+00	ci left: 6.297962e-09	ci right 1.385980e-06	k: 1	n:4020000
BRAF   4020000 perm   7904 sec   (509 perm/sec)   p_kst 2.487562e-07   p_cons 2.487562e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 2.771858e+00	ci left: 6.282334e-09	ci right 1.382541e-06	k: 1	n:4030000
KS ci ratio: 2.771858e+00	ci left: 6.282334e-09	ci right 1.382541e-06	k: 1	n:4030000
BRAF   4030000 perm   7941 sec   (508 perm/sec)   p_kst 2.481390e-07   p_cons 2.481390e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 2.771858e+00	ci left: 6.266784e-09	ci right 1.379119e-06	k: 1	n:4040000
KS ci ratio: 2.771858e+00	ci left: 6.266784e-09	ci right 1.379119e-06	k: 1	n:4040000
BRAF   4040000 perm   7977 sec   (506 perm/sec)   p_kst 2.475248e-07   p_cons 2.475248e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 2.771858e+00	ci left: 6.251311e-09	ci right 1.375714e-06	k: 1	n:4050000
KS ci ratio: 2.771858e+00	ci left: 6.251311e-09	ci right 1.375714e-06	k: 1	n:4050000
BRAF   4050000 perm   8013 sec   (505 perm/sec)   p_kst 2.469136e-07   p_cons 2.469136e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 2.771858e+00	ci left: 6.235913e-09	ci right 1.372325e-06	k: 1	n:4060000
KS ci ratio: 2.771858e+00	ci left: 6.235913e-09	ci right 1.372325e-06	k: 1	n:4060000
BRAF   4060000 perm   8050 sec   (504 perm/sec)   p_kst 2.463054e-07   p_cons 2.463054e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 2.771858e+00	ci left: 6.220592e-09	ci right 1.368953e-06	k: 1	n:4070000
KS ci ratio: 2.771858e+00	ci left: 6.220592e-09	ci right 1.368953e-06	k: 1	n:4070000
BRAF   4070000 perm   8088 sec   (503 perm/sec)   p_kst 2.457002e-07   p_cons 2.457002e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 2.771858e+00	ci left: 6.205345e-09	ci right 1.365598e-06	k: 1	n:4080000
KS ci ratio: 2.771858e+00	ci left: 6.205345e-09	ci right 1.365598e-06	k: 1	n:4080000
BRAF   4080000 perm   8125 sec   (502 perm/sec)   p_kst 2.450980e-07   p_cons 2.450980e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 2.771858e+00	ci left: 6.190173e-09	ci right 1.362259e-06	k: 1	n:4090000
KS ci ratio: 2.771858e+00	ci left: 6.190173e-09	ci right 1.362259e-06	k: 1	n:4090000
BRAF   4090000 perm   8163 sec   (501 perm/sec)   p_kst 2.444988e-07   p_cons 2.444988e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 2.771858e+00	ci left: 6.175075e-09	ci right 1.358937e-06	k: 1	n:4100000
KS ci ratio: 2.771858e+00	ci left: 6.175075e-09	ci right 1.358937e-06	k: 1	n:4100000
BRAF   4100000 perm   8201 sec   (500 perm/sec)   p_kst 2.439024e-07   p_cons 2.439024e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 2.771858e+00	ci left: 6.160051e-09	ci right 1.355630e-06	k: 1	n:4110000
KS ci ratio: 2.771858e+00	ci left: 6.160051e-09	ci right 1.355630e-06	k: 1	n:4110000
BRAF   4110000 perm   8239 sec   (499 perm/sec)   p_kst 2.433090e-07   p_cons 2.433090e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 2.771858e+00	ci left: 6.145099e-09	ci right 1.352340e-06	k: 1	n:4120000
KS ci ratio: 2.771858e+00	ci left: 6.145099e-09	ci right 1.352340e-06	k: 1	n:4120000
BRAF   4120000 perm   8277 sec   (498 perm/sec)   p_kst 2.427184e-07   p_cons 2.427184e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 2.771858e+00	ci left: 6.130220e-09	ci right 1.349065e-06	k: 1	n:4130000
KS ci ratio: 2.771858e+00	ci left: 6.130220e-09	ci right 1.349065e-06	k: 1	n:4130000
BRAF   4130000 perm   8315 sec   (497 perm/sec)   p_kst 2.421308e-07   p_cons 2.421308e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 2.771858e+00	ci left: 6.115413e-09	ci right 1.345807e-06	k: 1	n:4140000
KS ci ratio: 2.771858e+00	ci left: 6.115413e-09	ci right 1.345807e-06	k: 1	n:4140000
BRAF   4140000 perm   8352 sec   (496 perm/sec)   p_kst 2.415459e-07   p_cons 2.415459e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 2.771858e+00	ci left: 6.100677e-09	ci right 1.342564e-06	k: 1	n:4150000
KS ci ratio: 2.771858e+00	ci left: 6.100677e-09	ci right 1.342564e-06	k: 1	n:4150000
BRAF   4150000 perm   8389 sec   (495 perm/sec)   p_kst 2.409639e-07   p_cons 2.409639e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 2.771858e+00	ci left: 6.086011e-09	ci right 1.339337e-06	k: 1	n:4160000
KS ci ratio: 2.771858e+00	ci left: 6.086011e-09	ci right 1.339337e-06	k: 1	n:4160000
BRAF   4160000 perm   8428 sec   (494 perm/sec)   p_kst 2.403846e-07   p_cons 2.403846e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 2.771858e+00	ci left: 6.071417e-09	ci right 1.336125e-06	k: 1	n:4170000
KS ci ratio: 2.771858e+00	ci left: 6.071417e-09	ci right 1.336125e-06	k: 1	n:4170000
BRAF   4170000 perm   8467 sec   (492 perm/sec)   p_kst 2.398082e-07   p_cons 2.398082e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 2.771858e+00	ci left: 6.056892e-09	ci right 1.332928e-06	k: 1	n:4180000
KS ci ratio: 2.771858e+00	ci left: 6.056892e-09	ci right 1.332928e-06	k: 1	n:4180000
BRAF   4180000 perm   8505 sec   (491 perm/sec)   p_kst 2.392344e-07   p_cons 2.392344e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 2.771858e+00	ci left: 6.042436e-09	ci right 1.329747e-06	k: 1	n:4190000
KS ci ratio: 2.771858e+00	ci left: 6.042436e-09	ci right 1.329747e-06	k: 1	n:4190000
BRAF   4190000 perm   8543 sec   (490 perm/sec)   p_kst 2.386635e-07   p_cons 2.386635e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 2.771858e+00	ci left: 6.028049e-09	ci right 1.326581e-06	k: 1	n:4200000
KS ci ratio: 2.771858e+00	ci left: 6.028049e-09	ci right 1.326581e-06	k: 1	n:4200000
BRAF   4200000 perm   8583 sec   (489 perm/sec)   p_kst 2.380952e-07   p_cons 2.380952e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 2.771858e+00	ci left: 6.013731e-09	ci right 1.323430e-06	k: 1	n:4210000
KS ci ratio: 2.771858e+00	ci left: 6.013731e-09	ci right 1.323430e-06	k: 1	n:4210000
BRAF   4210000 perm   8621 sec   (488 perm/sec)   p_kst 2.375297e-07   p_cons 2.375297e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 2.771858e+00	ci left: 5.999481e-09	ci right 1.320294e-06	k: 1	n:4220000
KS ci ratio: 2.771858e+00	ci left: 5.999481e-09	ci right 1.320294e-06	k: 1	n:4220000
BRAF   4220000 perm   8659 sec   (487 perm/sec)   p_kst 2.369668e-07   p_cons 2.369668e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 2.771858e+00	ci left: 5.985298e-09	ci right 1.317173e-06	k: 1	n:4230000
KS ci ratio: 2.771858e+00	ci left: 5.985298e-09	ci right 1.317173e-06	k: 1	n:4230000
BRAF   4230000 perm   8698 sec   (486 perm/sec)   p_kst 2.364066e-07   p_cons 2.364066e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 2.771858e+00	ci left: 5.971181e-09	ci right 1.314066e-06	k: 1	n:4240000
KS ci ratio: 2.771858e+00	ci left: 5.971181e-09	ci right 1.314066e-06	k: 1	n:4240000
BRAF   4240000 perm   8738 sec   (485 perm/sec)   p_kst 2.358491e-07   p_cons 2.358491e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 2.771858e+00	ci left: 5.957131e-09	ci right 1.310974e-06	k: 1	n:4250000
KS ci ratio: 2.771858e+00	ci left: 5.957131e-09	ci right 1.310974e-06	k: 1	n:4250000
BRAF   4250000 perm   8777 sec   (484 perm/sec)   p_kst 2.352941e-07   p_cons 2.352941e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 2.771858e+00	ci left: 5.943147e-09	ci right 1.307897e-06	k: 1	n:4260000
KS ci ratio: 2.771858e+00	ci left: 5.943147e-09	ci right 1.307897e-06	k: 1	n:4260000
BRAF   4260000 perm   8817 sec   (483 perm/sec)   p_kst 2.347418e-07   p_cons 2.347418e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 2.771858e+00	ci left: 5.929229e-09	ci right 1.304834e-06	k: 1	n:4270000
KS ci ratio: 2.771858e+00	ci left: 5.929229e-09	ci right 1.304834e-06	k: 1	n:4270000
BRAF   4270000 perm   8857 sec   (482 perm/sec)   p_kst 2.341920e-07   p_cons 2.341920e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 2.771858e+00	ci left: 5.915376e-09	ci right 1.301785e-06	k: 1	n:4280000
KS ci ratio: 2.771858e+00	ci left: 5.915376e-09	ci right 1.301785e-06	k: 1	n:4280000
BRAF   4280000 perm   8900 sec   (481 perm/sec)   p_kst 2.336449e-07   p_cons 2.336449e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 2.771858e+00	ci left: 5.901587e-09	ci right 1.298751e-06	k: 1	n:4290000
KS ci ratio: 2.771858e+00	ci left: 5.901587e-09	ci right 1.298751e-06	k: 1	n:4290000
BRAF   4290000 perm   8940 sec   (480 perm/sec)   p_kst 2.331002e-07   p_cons 2.331002e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 2.771858e+00	ci left: 5.887862e-09	ci right 1.295730e-06	k: 1	n:4300000
KS ci ratio: 2.771858e+00	ci left: 5.887862e-09	ci right 1.295730e-06	k: 1	n:4300000
BRAF   4300000 perm   8979 sec   (479 perm/sec)   p_kst 2.325581e-07   p_cons 2.325581e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 2.771858e+00	ci left: 5.874201e-09	ci right 1.292724e-06	k: 1	n:4310000
KS ci ratio: 2.771858e+00	ci left: 5.874201e-09	ci right 1.292724e-06	k: 1	n:4310000
BRAF   4310000 perm   9022 sec   (478 perm/sec)   p_kst 2.320186e-07   p_cons 2.320186e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 2.771858e+00	ci left: 5.860604e-09	ci right 1.289732e-06	k: 1	n:4320000
KS ci ratio: 2.771858e+00	ci left: 5.860604e-09	ci right 1.289732e-06	k: 1	n:4320000
BRAF   4320000 perm   9061 sec   (477 perm/sec)   p_kst 2.314815e-07   p_cons 2.314815e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 2.771858e+00	ci left: 5.847069e-09	ci right 1.286753e-06	k: 1	n:4330000
KS ci ratio: 2.771858e+00	ci left: 5.847069e-09	ci right 1.286753e-06	k: 1	n:4330000
BRAF   4330000 perm   9100 sec   (476 perm/sec)   p_kst 2.309469e-07   p_cons 2.309469e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 2.771858e+00	ci left: 5.833596e-09	ci right 1.283788e-06	k: 1	n:4340000
KS ci ratio: 2.771858e+00	ci left: 5.833596e-09	ci right 1.283788e-06	k: 1	n:4340000
BRAF   4340000 perm   9140 sec   (475 perm/sec)   p_kst 2.304147e-07   p_cons 2.304147e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 2.771858e+00	ci left: 5.820186e-09	ci right 1.280837e-06	k: 1	n:4350000
KS ci ratio: 2.771858e+00	ci left: 5.820186e-09	ci right 1.280837e-06	k: 1	n:4350000
BRAF   4350000 perm   9185 sec   (474 perm/sec)   p_kst 2.298851e-07   p_cons 2.298851e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 2.771858e+00	ci left: 5.806837e-09	ci right 1.277899e-06	k: 1	n:4360000
KS ci ratio: 2.771858e+00	ci left: 5.806837e-09	ci right 1.277899e-06	k: 1	n:4360000
BRAF   4360000 perm   9230 sec   (472 perm/sec)   p_kst 2.293578e-07   p_cons 2.293578e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 2.771858e+00	ci left: 5.793549e-09	ci right 1.274975e-06	k: 1	n:4370000
KS ci ratio: 2.771858e+00	ci left: 5.793549e-09	ci right 1.274975e-06	k: 1	n:4370000
BRAF   4370000 perm   9273 sec   (471 perm/sec)   p_kst 2.288330e-07   p_cons 2.288330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 2.771858e+00	ci left: 5.780321e-09	ci right 1.272064e-06	k: 1	n:4380000
KS ci ratio: 2.771858e+00	ci left: 5.780321e-09	ci right 1.272064e-06	k: 1	n:4380000
BRAF   4380000 perm   9313 sec   (470 perm/sec)   p_kst 2.283105e-07   p_cons 2.283105e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 2.771858e+00	ci left: 5.767154e-09	ci right 1.269166e-06	k: 1	n:4390000
KS ci ratio: 2.771858e+00	ci left: 5.767154e-09	ci right 1.269166e-06	k: 1	n:4390000
BRAF   4390000 perm   9354 sec   (469 perm/sec)   p_kst 2.277904e-07   p_cons 2.277904e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 2.771858e+00	ci left: 5.754047e-09	ci right 1.266282e-06	k: 1	n:4400000
KS ci ratio: 2.771858e+00	ci left: 5.754047e-09	ci right 1.266282e-06	k: 1	n:4400000
BRAF   4400000 perm   9394 sec   (468 perm/sec)   p_kst 2.272727e-07   p_cons 2.272727e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 2.771858e+00	ci left: 5.741000e-09	ci right 1.263411e-06	k: 1	n:4410000
KS ci ratio: 2.771858e+00	ci left: 5.741000e-09	ci right 1.263411e-06	k: 1	n:4410000
BRAF   4410000 perm   9435 sec   (467 perm/sec)   p_kst 2.267574e-07   p_cons 2.267574e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 2.771858e+00	ci left: 5.728011e-09	ci right 1.260552e-06	k: 1	n:4420000
KS ci ratio: 2.771858e+00	ci left: 5.728011e-09	ci right 1.260552e-06	k: 1	n:4420000
BRAF   4420000 perm   9475 sec   (466 perm/sec)   p_kst 2.262443e-07   p_cons 2.262443e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 2.771858e+00	ci left: 5.715081e-09	ci right 1.257707e-06	k: 1	n:4430000
KS ci ratio: 2.771858e+00	ci left: 5.715081e-09	ci right 1.257707e-06	k: 1	n:4430000
BRAF   4430000 perm   9515 sec   (466 perm/sec)   p_kst 2.257336e-07   p_cons 2.257336e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 2.771858e+00	ci left: 5.702209e-09	ci right 1.254874e-06	k: 1	n:4440000
KS ci ratio: 2.771858e+00	ci left: 5.702209e-09	ci right 1.254874e-06	k: 1	n:4440000
BRAF   4440000 perm   9557 sec   (465 perm/sec)   p_kst 2.252252e-07   p_cons 2.252252e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 2.771858e+00	ci left: 5.689395e-09	ci right 1.252054e-06	k: 1	n:4450000
KS ci ratio: 2.771858e+00	ci left: 5.689395e-09	ci right 1.252054e-06	k: 1	n:4450000
BRAF   4450000 perm   9598 sec   (464 perm/sec)   p_kst 2.247191e-07   p_cons 2.247191e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 2.771858e+00	ci left: 5.676638e-09	ci right 1.249247e-06	k: 1	n:4460000
KS ci ratio: 2.771858e+00	ci left: 5.676638e-09	ci right 1.249247e-06	k: 1	n:4460000
BRAF   4460000 perm   9639 sec   (463 perm/sec)   p_kst 2.242152e-07   p_cons 2.242152e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 2.771858e+00	ci left: 5.663939e-09	ci right 1.246452e-06	k: 1	n:4470000
KS ci ratio: 2.771858e+00	ci left: 5.663939e-09	ci right 1.246452e-06	k: 1	n:4470000
BRAF   4470000 perm   9681 sec   (462 perm/sec)   p_kst 2.237136e-07   p_cons 2.237136e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 2.771858e+00	ci left: 5.651297e-09	ci right 1.243670e-06	k: 1	n:4480000
KS ci ratio: 2.771858e+00	ci left: 5.651297e-09	ci right 1.243670e-06	k: 1	n:4480000
BRAF   4480000 perm   9723 sec   (461 perm/sec)   p_kst 2.232143e-07   p_cons 2.232143e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 2.771858e+00	ci left: 5.638710e-09	ci right 1.240900e-06	k: 1	n:4490000
KS ci ratio: 2.771858e+00	ci left: 5.638710e-09	ci right 1.240900e-06	k: 1	n:4490000
BRAF   4490000 perm   9764 sec   (460 perm/sec)   p_kst 2.227171e-07   p_cons 2.227171e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 2.771858e+00	ci left: 5.626179e-09	ci right 1.238142e-06	k: 1	n:4500000
KS ci ratio: 2.771858e+00	ci left: 5.626179e-09	ci right 1.238142e-06	k: 1	n:4500000
BRAF   4500000 perm   9808 sec   (459 perm/sec)   p_kst 2.222222e-07   p_cons 2.222222e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 2.771858e+00	ci left: 5.613705e-09	ci right 1.235397e-06	k: 1	n:4510000
KS ci ratio: 2.771858e+00	ci left: 5.613705e-09	ci right 1.235397e-06	k: 1	n:4510000
BRAF   4510000 perm   9852 sec   (458 perm/sec)   p_kst 2.217295e-07   p_cons 2.217295e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 2.771858e+00	ci left: 5.601285e-09	ci right 1.232664e-06	k: 1	n:4520000
KS ci ratio: 2.771858e+00	ci left: 5.601285e-09	ci right 1.232664e-06	k: 1	n:4520000
BRAF   4520000 perm   9895 sec   (457 perm/sec)   p_kst 2.212389e-07   p_cons 2.212389e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 2.771858e+00	ci left: 5.588920e-09	ci right 1.229943e-06	k: 1	n:4530000
KS ci ratio: 2.771858e+00	ci left: 5.588920e-09	ci right 1.229943e-06	k: 1	n:4530000
BRAF   4530000 perm   9937 sec   (456 perm/sec)   p_kst 2.207506e-07   p_cons 2.207506e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 2.771858e+00	ci left: 5.576610e-09	ci right 1.227234e-06	k: 1	n:4540000
KS ci ratio: 2.771858e+00	ci left: 5.576610e-09	ci right 1.227234e-06	k: 1	n:4540000
BRAF   4540000 perm   9978 sec   (455 perm/sec)   p_kst 2.202643e-07   p_cons 2.202643e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 2.771858e+00	ci left: 5.564354e-09	ci right 1.224536e-06	k: 1	n:4550000
KS ci ratio: 2.771858e+00	ci left: 5.564354e-09	ci right 1.224536e-06	k: 1	n:4550000
BRAF   4550000 perm   10021 sec   (454 perm/sec)   p_kst 2.197802e-07   p_cons 2.197802e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 2.771858e+00	ci left: 5.552151e-09	ci right 1.221851e-06	k: 1	n:4560000
KS ci ratio: 2.771858e+00	ci left: 5.552151e-09	ci right 1.221851e-06	k: 1	n:4560000
BRAF   4560000 perm   10065 sec   (453 perm/sec)   p_kst 2.192982e-07   p_cons 2.192982e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 2.771858e+00	ci left: 5.540002e-09	ci right 1.219177e-06	k: 1	n:4570000
KS ci ratio: 2.771858e+00	ci left: 5.540002e-09	ci right 1.219177e-06	k: 1	n:4570000
BRAF   4570000 perm   10109 sec   (452 perm/sec)   p_kst 2.188184e-07   p_cons 2.188184e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 2.771858e+00	ci left: 5.527906e-09	ci right 1.216515e-06	k: 1	n:4580000
KS ci ratio: 2.771858e+00	ci left: 5.527906e-09	ci right 1.216515e-06	k: 1	n:4580000
BRAF   4580000 perm   10153 sec   (451 perm/sec)   p_kst 2.183406e-07   p_cons 2.183406e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 2.771858e+00	ci left: 5.515862e-09	ci right 1.213865e-06	k: 1	n:4590000
KS ci ratio: 2.771858e+00	ci left: 5.515862e-09	ci right 1.213865e-06	k: 1	n:4590000
BRAF   4590000 perm   10198 sec   (450 perm/sec)   p_kst 2.178649e-07   p_cons 2.178649e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 2.771858e+00	ci left: 5.503871e-09	ci right 1.211226e-06	k: 1	n:4600000
KS ci ratio: 2.771858e+00	ci left: 5.503871e-09	ci right 1.211226e-06	k: 1	n:4600000
BRAF   4600000 perm   10241 sec   (449 perm/sec)   p_kst 2.173913e-07   p_cons 2.173913e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 2.771858e+00	ci left: 5.491932e-09	ci right 1.208599e-06	k: 1	n:4610000
KS ci ratio: 2.771858e+00	ci left: 5.491932e-09	ci right 1.208599e-06	k: 1	n:4610000
BRAF   4610000 perm   10285 sec   (448 perm/sec)   p_kst 2.169197e-07   p_cons 2.169197e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 2.771858e+00	ci left: 5.480045e-09	ci right 1.205983e-06	k: 1	n:4620000
KS ci ratio: 2.771858e+00	ci left: 5.480045e-09	ci right 1.205983e-06	k: 1	n:4620000
BRAF   4620000 perm   10328 sec   (447 perm/sec)   p_kst 2.164502e-07   p_cons 2.164502e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 2.771858e+00	ci left: 5.468209e-09	ci right 1.203378e-06	k: 1	n:4630000
KS ci ratio: 2.771858e+00	ci left: 5.468209e-09	ci right 1.203378e-06	k: 1	n:4630000
BRAF   4630000 perm   10371 sec   (446 perm/sec)   p_kst 2.159827e-07   p_cons 2.159827e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 2.771858e+00	ci left: 5.456424e-09	ci right 1.200785e-06	k: 1	n:4640000
KS ci ratio: 2.771858e+00	ci left: 5.456424e-09	ci right 1.200785e-06	k: 1	n:4640000
BRAF   4640000 perm   10415 sec   (445 perm/sec)   p_kst 2.155172e-07   p_cons 2.155172e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 2.771858e+00	ci left: 5.444690e-09	ci right 1.198202e-06	k: 1	n:4650000
KS ci ratio: 2.771858e+00	ci left: 5.444690e-09	ci right 1.198202e-06	k: 1	n:4650000
BRAF   4650000 perm   10459 sec   (445 perm/sec)   p_kst 2.150538e-07   p_cons 2.150538e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 2.771858e+00	ci left: 5.433006e-09	ci right 1.195631e-06	k: 1	n:4660000
KS ci ratio: 2.771858e+00	ci left: 5.433006e-09	ci right 1.195631e-06	k: 1	n:4660000
BRAF   4660000 perm   10504 sec   (444 perm/sec)   p_kst 2.145923e-07   p_cons 2.145923e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 2.771858e+00	ci left: 5.421372e-09	ci right 1.193071e-06	k: 1	n:4670000
KS ci ratio: 2.771858e+00	ci left: 5.421372e-09	ci right 1.193071e-06	k: 1	n:4670000
BRAF   4670000 perm   10553 sec   (443 perm/sec)   p_kst 2.141328e-07   p_cons 2.141328e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 2.771858e+00	ci left: 5.409788e-09	ci right 1.190522e-06	k: 1	n:4680000
KS ci ratio: 2.771858e+00	ci left: 5.409788e-09	ci right 1.190522e-06	k: 1	n:4680000
BRAF   4680000 perm   10597 sec   (442 perm/sec)   p_kst 2.136752e-07   p_cons 2.136752e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 2.771858e+00	ci left: 5.398253e-09	ci right 1.187983e-06	k: 1	n:4690000
KS ci ratio: 2.771858e+00	ci left: 5.398253e-09	ci right 1.187983e-06	k: 1	n:4690000
BRAF   4690000 perm   10640 sec   (441 perm/sec)   p_kst 2.132196e-07   p_cons 2.132196e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 2.771858e+00	ci left: 5.386768e-09	ci right 1.185455e-06	k: 1	n:4700000
KS ci ratio: 2.771858e+00	ci left: 5.386768e-09	ci right 1.185455e-06	k: 1	n:4700000
BRAF   4700000 perm   10686 sec   (440 perm/sec)   p_kst 2.127660e-07   p_cons 2.127660e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 2.771858e+00	ci left: 5.375331e-09	ci right 1.182939e-06	k: 1	n:4710000
KS ci ratio: 2.771858e+00	ci left: 5.375331e-09	ci right 1.182939e-06	k: 1	n:4710000
BRAF   4710000 perm   10735 sec   (439 perm/sec)   p_kst 2.123142e-07   p_cons 2.123142e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 2.771858e+00	ci left: 5.363942e-09	ci right 1.180432e-06	k: 1	n:4720000
KS ci ratio: 2.771858e+00	ci left: 5.363942e-09	ci right 1.180432e-06	k: 1	n:4720000
BRAF   4720000 perm   10778 sec   (438 perm/sec)   p_kst 2.118644e-07   p_cons 2.118644e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 2.771858e+00	ci left: 5.352602e-09	ci right 1.177937e-06	k: 1	n:4730000
KS ci ratio: 2.771858e+00	ci left: 5.352602e-09	ci right 1.177937e-06	k: 1	n:4730000
BRAF   4730000 perm   10822 sec   (437 perm/sec)   p_kst 2.114165e-07   p_cons 2.114165e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 2.771858e+00	ci left: 5.341310e-09	ci right 1.175452e-06	k: 1	n:4740000
KS ci ratio: 2.771858e+00	ci left: 5.341310e-09	ci right 1.175452e-06	k: 1	n:4740000
BRAF   4740000 perm   10868 sec   (436 perm/sec)   p_kst 2.109705e-07   p_cons 2.109705e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 2.771858e+00	ci left: 5.330065e-09	ci right 1.172977e-06	k: 1	n:4750000
KS ci ratio: 2.771858e+00	ci left: 5.330065e-09	ci right 1.172977e-06	k: 1	n:4750000
BRAF   4750000 perm   10916 sec   (435 perm/sec)   p_kst 2.105263e-07   p_cons 2.105263e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 2.771858e+00	ci left: 5.318867e-09	ci right 1.170513e-06	k: 1	n:4760000
KS ci ratio: 2.771858e+00	ci left: 5.318867e-09	ci right 1.170513e-06	k: 1	n:4760000
BRAF   4760000 perm   10961 sec   (434 perm/sec)   p_kst 2.100840e-07   p_cons 2.100840e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 2.771858e+00	ci left: 5.307716e-09	ci right 1.168059e-06	k: 1	n:4770000
KS ci ratio: 2.771858e+00	ci left: 5.307716e-09	ci right 1.168059e-06	k: 1	n:4770000
BRAF   4770000 perm   11005 sec   (433 perm/sec)   p_kst 2.096436e-07   p_cons 2.096436e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 2.771858e+00	ci left: 5.296612e-09	ci right 1.165615e-06	k: 1	n:4780000
KS ci ratio: 2.771858e+00	ci left: 5.296612e-09	ci right 1.165615e-06	k: 1	n:4780000
BRAF   4780000 perm   11053 sec   (432 perm/sec)   p_kst 2.092050e-07   p_cons 2.092050e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 2.771858e+00	ci left: 5.285555e-09	ci right 1.163182e-06	k: 1	n:4790000
KS ci ratio: 2.771858e+00	ci left: 5.285555e-09	ci right 1.163182e-06	k: 1	n:4790000
BRAF   4790000 perm   11105 sec   (431 perm/sec)   p_kst 2.087683e-07   p_cons 2.087683e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 2.771858e+00	ci left: 5.274543e-09	ci right 1.160758e-06	k: 1	n:4800000
KS ci ratio: 2.771858e+00	ci left: 5.274543e-09	ci right 1.160758e-06	k: 1	n:4800000
BRAF   4800000 perm   11151 sec   (430 perm/sec)   p_kst 2.083333e-07   p_cons 2.083333e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 2.771858e+00	ci left: 5.263578e-09	ci right 1.158345e-06	k: 1	n:4810000
KS ci ratio: 2.771858e+00	ci left: 5.263578e-09	ci right 1.158345e-06	k: 1	n:4810000
BRAF   4810000 perm   11196 sec   (430 perm/sec)   p_kst 2.079002e-07   p_cons 2.079002e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 2.771858e+00	ci left: 5.252657e-09	ci right 1.155942e-06	k: 1	n:4820000
KS ci ratio: 2.771858e+00	ci left: 5.252657e-09	ci right 1.155942e-06	k: 1	n:4820000
BRAF   4820000 perm   11244 sec   (429 perm/sec)   p_kst 2.074689e-07   p_cons 2.074689e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 2.771858e+00	ci left: 5.241782e-09	ci right 1.153549e-06	k: 1	n:4830000
KS ci ratio: 2.771858e+00	ci left: 5.241782e-09	ci right 1.153549e-06	k: 1	n:4830000
BRAF   4830000 perm   11289 sec   (428 perm/sec)   p_kst 2.070393e-07   p_cons 2.070393e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 2.771858e+00	ci left: 5.230952e-09	ci right 1.151165e-06	k: 1	n:4840000
KS ci ratio: 2.771858e+00	ci left: 5.230952e-09	ci right 1.151165e-06	k: 1	n:4840000
BRAF   4840000 perm   11334 sec   (427 perm/sec)   p_kst 2.066116e-07   p_cons 2.066116e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 2.771858e+00	ci left: 5.220167e-09	ci right 1.148792e-06	k: 1	n:4850000
KS ci ratio: 2.771858e+00	ci left: 5.220167e-09	ci right 1.148792e-06	k: 1	n:4850000
BRAF   4850000 perm   11382 sec   (426 perm/sec)   p_kst 2.061856e-07   p_cons 2.061856e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 2.771858e+00	ci left: 5.209426e-09	ci right 1.146428e-06	k: 1	n:4860000
KS ci ratio: 2.771858e+00	ci left: 5.209426e-09	ci right 1.146428e-06	k: 1	n:4860000
BRAF   4860000 perm   11427 sec   (425 perm/sec)   p_kst 2.057613e-07   p_cons 2.057613e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 2.771858e+00	ci left: 5.198729e-09	ci right 1.144074e-06	k: 1	n:4870000
KS ci ratio: 2.771858e+00	ci left: 5.198729e-09	ci right 1.144074e-06	k: 1	n:4870000
BRAF   4870000 perm   11471 sec   (425 perm/sec)   p_kst 2.053388e-07   p_cons 2.053388e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 2.771858e+00	ci left: 5.188076e-09	ci right 1.141730e-06	k: 1	n:4880000
KS ci ratio: 2.771858e+00	ci left: 5.188076e-09	ci right 1.141730e-06	k: 1	n:4880000
BRAF   4880000 perm   11517 sec   (424 perm/sec)   p_kst 2.049180e-07   p_cons 2.049180e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 2.771858e+00	ci left: 5.177466e-09	ci right 1.139395e-06	k: 1	n:4890000
KS ci ratio: 2.771858e+00	ci left: 5.177466e-09	ci right 1.139395e-06	k: 1	n:4890000
BRAF   4890000 perm   11565 sec   (423 perm/sec)   p_kst 2.044990e-07   p_cons 2.044990e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 2.771858e+00	ci left: 5.166900e-09	ci right 1.137070e-06	k: 1	n:4900000
KS ci ratio: 2.771858e+00	ci left: 5.166900e-09	ci right 1.137070e-06	k: 1	n:4900000
BRAF   4900000 perm   11612 sec   (422 perm/sec)   p_kst 2.040816e-07   p_cons 2.040816e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 2.771858e+00	ci left: 5.156376e-09	ci right 1.134754e-06	k: 1	n:4910000
KS ci ratio: 2.771858e+00	ci left: 5.156376e-09	ci right 1.134754e-06	k: 1	n:4910000
BRAF   4910000 perm   11659 sec   (421 perm/sec)   p_kst 2.036660e-07   p_cons 2.036660e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 2.771858e+00	ci left: 5.145896e-09	ci right 1.132447e-06	k: 1	n:4920000
KS ci ratio: 2.771858e+00	ci left: 5.145896e-09	ci right 1.132447e-06	k: 1	n:4920000
BRAF   4920000 perm   11708 sec   (420 perm/sec)   p_kst 2.032520e-07   p_cons 2.032520e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 2.771858e+00	ci left: 5.135458e-09	ci right 1.130150e-06	k: 1	n:4930000
KS ci ratio: 2.771858e+00	ci left: 5.135458e-09	ci right 1.130150e-06	k: 1	n:4930000
BRAF   4930000 perm   11755 sec   (419 perm/sec)   p_kst 2.028398e-07   p_cons 2.028398e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 2.771858e+00	ci left: 5.125062e-09	ci right 1.127863e-06	k: 1	n:4940000
KS ci ratio: 2.771858e+00	ci left: 5.125062e-09	ci right 1.127863e-06	k: 1	n:4940000
BRAF   4940000 perm   11804 sec   (419 perm/sec)   p_kst 2.024291e-07   p_cons 2.024291e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 2.771858e+00	ci left: 5.114709e-09	ci right 1.125584e-06	k: 1	n:4950000
KS ci ratio: 2.771858e+00	ci left: 5.114709e-09	ci right 1.125584e-06	k: 1	n:4950000
BRAF   4950000 perm   11849 sec   (418 perm/sec)   p_kst 2.020202e-07   p_cons 2.020202e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 2.771858e+00	ci left: 5.104397e-09	ci right 1.123315e-06	k: 1	n:4960000
KS ci ratio: 2.771858e+00	ci left: 5.104397e-09	ci right 1.123315e-06	k: 1	n:4960000
BRAF   4960000 perm   11893 sec   (417 perm/sec)   p_kst 2.016129e-07   p_cons 2.016129e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 2.771858e+00	ci left: 5.094126e-09	ci right 1.121054e-06	k: 1	n:4970000
KS ci ratio: 2.771858e+00	ci left: 5.094126e-09	ci right 1.121054e-06	k: 1	n:4970000
BRAF   4970000 perm   11939 sec   (416 perm/sec)   p_kst 2.012072e-07   p_cons 2.012072e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 2.771858e+00	ci left: 5.083897e-09	ci right 1.118803e-06	k: 1	n:4980000
KS ci ratio: 2.771858e+00	ci left: 5.083897e-09	ci right 1.118803e-06	k: 1	n:4980000
BRAF   4980000 perm   11988 sec   (415 perm/sec)   p_kst 2.008032e-07   p_cons 2.008032e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 2.771858e+00	ci left: 5.073709e-09	ci right 1.116561e-06	k: 1	n:4990000
KS ci ratio: 2.771858e+00	ci left: 5.073709e-09	ci right 1.116561e-06	k: 1	n:4990000
BRAF   4990000 perm   12035 sec   (415 perm/sec)   p_kst 2.004008e-07   p_cons 2.004008e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 2.771858e+00	ci left: 5.063562e-09	ci right 1.114328e-06	k: 1	n:5000000
KS ci ratio: 2.771858e+00	ci left: 5.063562e-09	ci right 1.114328e-06	k: 1	n:5000000
BRAF   5000000 perm   12081 sec   (414 perm/sec)   p_kst 2.000000e-07   p_cons 2.000000e-07   p_joint 0

Outputting figure to mutsig2_images.part000000000017/BRAF.23_2373_5000000_2e-07_2e-07_0.png
                gene_name: BRAF
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 2.00e-07 
        ci_ks_bounds_left: 5.06e-09 
       ci_ks_bounds_right: 1.11e-06 
                   p_cons: 2.00e-07 
      ci_cons_bounds_left: 5.06e-09 
     ci_cons_bounds_right: 1.11e-06 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 2 percent done.
BRCA2
Processing conservation and coverage...
96% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.149354e-02	ci left: 9.154367e-01	ci right 9.261167e-01	k: 9209	n:10000
Cons ci ratio: 3.467933e-02	ci left: 5.511066e-01	ci right 5.706579e-01	k: 5609	n:10000
KS ci ratio: 2.059430e-02	ci left: 7.754984e-01	ci right 7.917361e-01	k: 7837	n:10000
BRCA2   10000 perm   4 sec   (2273 perm/sec)   p_kst 7.837000e-01   p_cons 5.609000e-01   p_joint 9.209000e-01

Outputting figure to mutsig2_images.part000000000017/BRCA2.22_10361_10000_0.7837_0.5609_0.9209.png
                gene_name: BRCA2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 4 percent done.
BOD1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.513557e-02	ci left: 8.635571e-01	ci right 8.768264e-01	k: 8703	n:10000
Cons ci ratio: 1.395289e-02	ci left: 8.812461e-01	ci right 8.937272e-01	k: 8876	n:10000
KS ci ratio: 2.055786e-02	ci left: 7.761063e-01	ci right 7.923278e-01	k: 7843	n:10000
BOD1L   10000 perm   4 sec   (2758 perm/sec)   p_kst 7.843000e-01   p_cons 8.876000e-01   p_joint 8.703000e-01

Outputting figure to mutsig2_images.part000000000017/BOD1L.16_9260_10000_0.7843_0.8876_0.8703.png
                gene_name: BOD1L
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 5 percent done.
BRWD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.688685e-02	ci left: 8.362290e-01	ci right 8.505703e-01	k: 8435	n:10000
KS ci ratio: 1.445118e-02	ci left: 8.738790e-01	ci right 8.866985e-01	k: 8804	n:10000
BRWD3   10000 perm   3 sec   (2905 perm/sec)   p_kst 8.804000e-01   p_cons 8.435000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BRWD3.16_5573_10000_0.8804_0.8435_1.png
                gene_name: BRWD3
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
BMS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.384994e-02	ci left: 4.343291e-01	ci right 4.539035e-01	k: 4441	n:10000
KS ci ratio: 9.813094e-03	ci left: 9.363056e-01	ci right 9.456355e-01	k: 9411	n:10000
BMS1   10000 perm   3 sec   (3588 perm/sec)   p_kst 9.411000e-01   p_cons 4.441000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BMS1.15_3937_10000_0.9411_0.4441_1.png
                gene_name: BMS1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
BOC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.959588e-02	ci left: 4.850534e-01	ci right 5.047496e-01	k: 4949	n:10000
KS ci ratio: 2.004673e-02	ci left: 7.846201e-01	ci right 8.006090e-01	k: 7927	n:10000
BOC   10000 perm   2 sec   (4410 perm/sec)   p_kst 7.927000e-01   p_cons 4.949000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BOC.15_3417_10000_0.7927_0.4949_1.png
                gene_name: BOC
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
BSN
Processing conservation and coverage...
84% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.819129e-02	ci left: 3.884867e-01	ci right 4.077727e-01	k: 3981	n:10000
Cons ci ratio: 3.490513e-02	ci left: 5.479000e-01	ci right 5.674664e-01	k: 5577	n:10000
KS ci ratio: 6.486675e-02	ci left: 2.587439e-01	ci right 2.761918e-01	k: 2674	n:10000
BSN   10000 perm   5 sec   (2100 perm/sec)   p_kst 2.674000e-01   p_cons 5.577000e-01   p_joint 3.981000e-01

Outputting figure to mutsig2_images.part000000000017/BSN.14_11821_10000_0.2674_0.5577_0.3981.png
                gene_name: BSN
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 12 percent done.
BTAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.608669e-02	ci left: 8.488632e-01	ci right 8.627288e-01	k: 8559	n:10000
Cons ci ratio: 1.644997e-02	ci left: 8.431554e-01	ci right 8.572399e-01	k: 8503	n:10000
KS ci ratio: 2.508199e-02	ci left: 7.004918e-01	ci right 7.183861e-01	k: 7095	n:10000
BTAF1   10000 perm   3 sec   (2996 perm/sec)   p_kst 7.095000e-01   p_cons 8.503000e-01   p_joint 8.559000e-01

Outputting figure to mutsig2_images.part000000000017/BTAF1.14_5702_10000_0.7095_0.8503_0.8559.png
                gene_name: BTAF1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 14 percent done.
BNC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.820443e-02	ci left: 2.397579e-01	ci right 2.567890e-01	k: 2482	n:10000
Cons ci ratio: 4.603814e-02	ci left: 4.105002e-01	ci right 4.299463e-01	k: 4202	n:10000
KS ci ratio: 7.972063e-02	ci left: 1.868804e-01	ci right 2.024978e-01	k: 1946	n:10000
BNC1   10000 perm   3 sec   (3915 perm/sec)   p_kst 1.946000e-01   p_cons 4.202000e-01   p_joint 2.482000e-01

Outputting figure to mutsig2_images.part000000000017/BNC1.13_3005_10000_0.1946_0.4202_0.2482.png
                gene_name: BNC1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 16 percent done.
BNC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.314654e-02	ci left: 4.423104e-01	ci right 4.619175e-01	k: 4521	n:10000
Cons ci ratio: 2.445056e-02	ci left: 7.109857e-01	ci right 7.286861e-01	k: 7199	n:10000
KS ci ratio: 5.855114e-02	ci left: 3.003467e-01	ci right 3.185644e-01	k: 3094	n:10000
BNC2   10000 perm   2 sec   (4337 perm/sec)   p_kst 3.094000e-01   p_cons 7.199000e-01   p_joint 4.521000e-01

Outputting figure to mutsig2_images.part000000000017/BNC2.13_3328_10000_0.3094_0.7199_0.4521.png
                gene_name: BNC2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 18 percent done.
BRWD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.362097e-02	ci left: 3.388581e-01	ci right 3.576304e-01	k: 3482	n:10000
Cons ci ratio: 4.444083e-02	ci left: 4.277464e-01	ci right 4.472900e-01	k: 4375	n:10000
KS ci ratio: 6.684359e-02	ci left: 2.472706e-01	ci right 2.644719e-01	k: 2558	n:10000
BRWD1   10000 perm   4 sec   (2289 perm/sec)   p_kst 2.558000e-01   p_cons 4.375000e-01   p_joint 3.482000e-01

Outputting figure to mutsig2_images.part000000000017/BRWD1.13_7384_10000_0.2558_0.4375_0.3482.png
                gene_name: BRWD1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 19 percent done.
BMPR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.798932e-02	ci left: 1.582644e-01	ci right 1.729310e-01	k: 1655	n:10000
Cons ci ratio: 5.518041e-02	ci left: 3.260462e-01	ci right 3.446498e-01	k: 3353	n:10000
KS ci ratio: 1.167540e-01	ci left: 9.535564e-02	ci right 1.072778e-01	k: 1012	n:10000
BMPR1B   10000 perm   2 sec   (4599 perm/sec)   p_kst 1.012000e-01   p_cons 3.353000e-01   p_joint 1.655000e-01

Joint ci ratio: 7.156303e-02	ci left: 1.257620e-01	ci right 1.351457e-01	k: 2608	n:20000
Cons ci ratio: 3.968415e-02	ci left: 3.213446e-01	ci right 3.344055e-01	k: 6557	n:20000
KS ci ratio: 8.329303e-02	ci left: 9.553217e-02	ci right 1.038846e-01	k: 1993	n:20000
BMPR1B   20000 perm   5 sec   (4134 perm/sec)   p_kst 9.965000e-02   p_cons 3.278500e-01   p_joint 1.304000e-01

Outputting figure to mutsig2_images.part000000000017/BMPR1B.10_1549_20000_0.09965_0.32785_0.1304.png
                gene_name: BMPR1B
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.100 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 21 percent done.
BMPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.998574e-02	ci left: 7.856340e-01	ci right 8.015946e-01	k: 7937	n:10000
Cons ci ratio: 6.121662e-02	ci left: 2.818121e-01	ci right 2.997100e-01	k: 2907	n:10000
KS ci ratio: 2.364582e-02	ci left: 7.244142e-01	ci right 7.418498e-01	k: 7332	n:10000
BMPR2   10000 perm   2 sec   (4033 perm/sec)   p_kst 7.332000e-01   p_cons 2.907000e-01   p_joint 7.937000e-01

Outputting figure to mutsig2_images.part000000000017/BMPR2.10_3169_10000_0.7332_0.2907_0.7937.png
                gene_name: BMPR2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 23 percent done.
BPTF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.915330e-01	ci left: 3.633915e-02	ci right 4.413159e-02	k: 401	n:10000
Cons ci ratio: 3.073991e-01	ci left: 1.354008e-02	ci right 1.854760e-02	k: 159	n:10000
KS ci ratio: 5.314023e-02	ci left: 3.429316e-01	ci right 3.617544e-01	k: 3523	n:10000
BPTF   10000 perm   4 sec   (2649 perm/sec)   p_kst 3.523000e-01   p_cons 1.590000e-02   p_joint 4.010000e-02

Joint ci ratio: 1.520808e-01	ci left: 2.970034e-02	ci right 3.463690e-02	k: 642	n:20000
Cons ci ratio: 2.261475e-01	ci left: 1.312511e-02	ci right 1.651809e-02	k: 295	n:20000
KS ci ratio: 3.776169e-02	ci left: 3.434864e-01	ci right 3.567572e-01	k: 7002	n:20000
BPTF   20000 perm   8 sec   (2539 perm/sec)   p_kst 3.501000e-01   p_cons 1.475000e-02   p_joint 3.210000e-02

Joint ci ratio: 1.034592e-01	ci left: 4.329927e-02	ci right 4.805588e-02	k: 1369	n:30000
Cons ci ratio: 1.813614e-01	ci left: 1.394148e-02	ci right 1.675352e-02	k: 459	n:30000
KS ci ratio: 3.078378e-02	ci left: 3.454310e-01	ci right 3.562645e-01	k: 10525	n:30000
BPTF   30000 perm   12 sec   (2426 perm/sec)   p_kst 3.508333e-01   p_cons 1.530000e-02   p_joint 4.563333e-02

Joint ci ratio: 1.049926e-01	ci left: 3.190425e-02	ci right 3.546386e-02	k: 1346	n:40000
Cons ci ratio: 1.546906e-01	ci left: 1.457665e-02	ci right 1.704437e-02	k: 631	n:40000
KS ci ratio: 2.655112e-02	ci left: 3.480159e-01	ci right 3.574055e-01	k: 14108	n:40000
BPTF   40000 perm   17 sec   (2382 perm/sec)   p_kst 3.527000e-01   p_cons 1.577500e-02   p_joint 3.365000e-02

Joint ci ratio: 9.257264e-02	ci left: 3.301509e-02	ci right 3.623923e-02	k: 1730	n:50000
Cons ci ratio: 1.399891e-01	ci left: 1.435819e-02	ci right 1.653860e-02	k: 771	n:50000
KS ci ratio: 2.376183e-02	ci left: 3.482513e-01	ci right 3.566459e-01	k: 17622	n:50000
BPTF   50000 perm   21 sec   (2365 perm/sec)   p_kst 3.524400e-01   p_cons 1.542000e-02   p_joint 3.460000e-02

Joint ci ratio: 7.474320e-02	ci left: 4.219263e-02	ci right 4.548501e-02	k: 2629	n:60000
Cons ci ratio: 1.274017e-01	ci left: 1.454287e-02	ci right 1.653773e-02	k: 931	n:60000
KS ci ratio: 2.166742e-02	ci left: 3.491250e-01	ci right 3.567892e-01	k: 21177	n:60000
BPTF   60000 perm   26 sec   (2323 perm/sec)   p_kst 3.529500e-01   p_cons 1.551667e-02   p_joint 4.381667e-02

Joint ci ratio: 7.670087e-02	ci left: 3.459002e-02	ci right 3.736290e-02	k: 2517	n:70000
Cons ci ratio: 1.155114e-01	ci left: 1.524998e-02	ci right 1.713329e-02	k: 1132	n:70000
KS ci ratio: 2.007750e-02	ci left: 3.490169e-01	ci right 3.561096e-01	k: 24679	n:70000
BPTF   70000 perm   31 sec   (2270 perm/sec)   p_kst 3.525571e-01   p_cons 1.617143e-02   p_joint 3.595714e-02

Joint ci ratio: 6.717759e-02	ci left: 3.945188e-02	ci right 4.220655e-02	k: 3265	n:80000
Cons ci ratio: 1.084715e-01	ci left: 1.519052e-02	ci right 1.694483e-02	k: 1284	n:80000
KS ci ratio: 1.880328e-02	ci left: 3.487021e-01	ci right 3.553336e-01	k: 28161	n:80000
BPTF   80000 perm   36 sec   (2237 perm/sec)   p_kst 3.520125e-01   p_cons 1.605000e-02   p_joint 4.081250e-02

Joint ci ratio: 6.884893e-02	ci left: 3.356839e-02	ci right 3.597283e-02	k: 3128	n:90000
Cons ci ratio: 1.026884e-01	ci left: 1.511450e-02	ci right 1.676135e-02	k: 1433	n:90000
KS ci ratio: 1.774270e-02	ci left: 3.485131e-01	ci right 3.547631e-01	k: 31647	n:90000
BPTF   90000 perm   41 sec   (2220 perm/sec)   p_kst 3.516333e-01   p_cons 1.592222e-02   p_joint 3.475556e-02

Joint ci ratio: 6.050784e-02	ci left: 3.905988e-02	ci right 4.150687e-02	k: 4027	n:100000
Cons ci ratio: 9.771005e-02	ci left: 1.506545e-02	ci right 1.662281e-02	k: 1583	n:100000
KS ci ratio: 1.684899e-02	ci left: 3.482208e-01	ci right 3.541478e-01	k: 35118	n:100000
BPTF   100000 perm   45 sec   (2202 perm/sec)   p_kst 3.511800e-01   p_cons 1.583000e-02   p_joint 4.027000e-02

Outputting figure to mutsig2_images.part000000000017/BPTF.10_9261_100000_0.35118_0.01583_0.04027.png
                gene_name: BPTF
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 25 percent done.
BRSK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.640474e-02	ci left: 8.438687e-01	ci right 8.579262e-01	k: 8510	n:10000
Cons ci ratio: 2.211887e-02	ci left: 7.499869e-01	ci right 7.668623e-01	k: 7585	n:10000
KS ci ratio: 2.750272e-02	ci left: 6.607862e-01	ci right 6.793147e-01	k: 6701	n:10000
BRSK1   10000 perm   3 sec   (3741 perm/sec)   p_kst 6.701000e-01   p_cons 7.585000e-01   p_joint 8.510000e-01

Outputting figure to mutsig2_images.part000000000017/BRSK1.9_2413_10000_0.6701_0.7585_0.851.png
                gene_name: BRSK1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 26 percent done.
BTBD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.055019e-01	ci left: 1.148645e-01	ci right 1.277571e-01	k: 1212	n:10000
Cons ci ratio: 1.367749e-01	ci left: 7.068651e-02	ci right 8.116213e-02	k: 758	n:10000
KS ci ratio: 7.499060e-02	ci left: 2.064889e-01	ci right 2.226777e-01	k: 2145	n:10000
BTBD11   10000 perm   3 sec   (3876 perm/sec)   p_kst 2.145000e-01   p_cons 7.580000e-02   p_joint 1.212000e-01

Joint ci ratio: 7.640568e-02	ci left: 1.118388e-01	ci right 1.207730e-01	k: 2325	n:20000
Cons ci ratio: 9.737753e-02	ci left: 7.128887e-02	ci right 7.863527e-02	k: 1498	n:20000
KS ci ratio: 5.229848e-02	ci left: 2.135321e-01	ci right 2.250496e-01	k: 4385	n:20000
BTBD11   20000 perm   6 sec   (3182 perm/sec)   p_kst 2.192500e-01   p_cons 7.490000e-02   p_joint 1.162500e-01

Outputting figure to mutsig2_images.part000000000017/BTBD11.9_3488_20000_0.21925_0.0749_0.11625.png
                gene_name: BTBD11
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 28 percent done.
BTBD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.792043e-02	ci left: 6.540417e-01	ci right 6.726631e-01	k: 6634	n:10000
Cons ci ratio: 7.227413e-02	ci left: 2.190177e-01	ci right 2.355415e-01	k: 2272	n:10000
KS ci ratio: 3.235097e-02	ci left: 5.851015e-01	ci right 6.044433e-01	k: 5948	n:10000
BTBD7   10000 perm   3 sec   (3859 perm/sec)   p_kst 5.948000e-01   p_cons 2.272000e-01   p_joint 6.634000e-01

Outputting figure to mutsig2_images.part000000000017/BTBD7.9_3514_10000_0.5948_0.2272_0.6634.png
                gene_name: BTBD7
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 30 percent done.
BRIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.870226e-02	ci left: 8.068419e-01	ci right 8.221744e-01	k: 8146	n:10000
Cons ci ratio: 3.019312e-02	ci left: 6.180386e-01	ci right 6.370870e-01	k: 6276	n:10000
KS ci ratio: 1.859697e-02	ci left: 8.085685e-01	ci right 8.238468e-01	k: 8163	n:10000
BRIP1   10000 perm   3 sec   (3539 perm/sec)   p_kst 8.163000e-01   p_cons 6.276000e-01   p_joint 8.146000e-01

Outputting figure to mutsig2_images.part000000000017/BRIP1.8_3826_10000_0.8163_0.6276_0.8146.png
                gene_name: BRIP1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 32 percent done.
BRD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.926472e-02	ci left: 4.892517e-01	ci right 5.089489e-01	k: 4991	n:10000
Cons ci ratio: 6.663749e-03	ci left: 9.685759e-01	ci right 9.751453e-01	k: 9720	n:10000
KS ci ratio: 7.002437e-02	ci left: 2.301744e-01	ci right 2.469782e-01	k: 2385	n:10000
BRD8   10000 perm   2 sec   (4008 perm/sec)   p_kst 2.385000e-01   p_cons 9.720000e-01   p_joint 4.991000e-01

Outputting figure to mutsig2_images.part000000000017/BRD8.7_4103_10000_0.2385_0.972_0.4991.png
                gene_name: BRD8
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 33 percent done.
BRDT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.344290e-02	ci left: 5.689506e-01	ci right 5.884036e-01	k: 5787	n:10000
Cons ci ratio: 2.299980e-02	ci left: 7.352249e-01	ci right 7.524328e-01	k: 7439	n:10000
KS ci ratio: 4.725902e-02	ci left: 3.978474e-01	ci right 4.172065e-01	k: 4075	n:10000
BRDT   10000 perm   2 sec   (4245 perm/sec)   p_kst 4.075000e-01   p_cons 7.439000e-01   p_joint 5.787000e-01

Outputting figure to mutsig2_images.part000000000017/BRDT.7_2916_10000_0.4075_0.7439_0.5787.png
                gene_name: BRDT
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 35 percent done.
BRPF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.518041e-03	ci left: 9.397278e-01	ci right 9.488113e-01	k: 9444	n:10000
Cons ci ratio: 2.556943e-02	ci left: 6.924235e-01	ci right 7.104591e-01	k: 7015	n:10000
KS ci ratio: 1.788029e-02	ci left: 8.202549e-01	ci right 8.351537e-01	k: 8278	n:10000
BRPF1   10000 perm   2 sec   (4114 perm/sec)   p_kst 8.278000e-01   p_cons 7.015000e-01   p_joint 9.444000e-01

Outputting figure to mutsig2_images.part000000000017/BRPF1.7_3715_10000_0.8278_0.7015_0.9444.png
                gene_name: BRPF1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 37 percent done.
BTK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.082408e-02	ci left: 3.634102e-01	ci right 3.824638e-01	k: 3729	n:10000
Cons ci ratio: 6.013616e-02	ci left: 2.891445e-01	ci right 3.071732e-01	k: 2981	n:10000
KS ci ratio: 5.713003e-02	ci left: 3.108607e-01	ci right 3.292442e-01	k: 3200	n:10000
BTK   10000 perm   2 sec   (4516 perm/sec)   p_kst 3.200000e-01   p_cons 2.981000e-01   p_joint 3.729000e-01

Outputting figure to mutsig2_images.part000000000017/BTK.7_2052_10000_0.32_0.2981_0.3729.png
                gene_name: BTK
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 39 percent done.
BRCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.969102e-02	ci left: 4.838540e-01	ci right 5.035497e-01	k: 4937	n:10000
Cons ci ratio: 2.186533e-02	ci left: 7.542360e-01	ci right 7.710108e-01	k: 7627	n:10000
KS ci ratio: 5.720887e-02	ci left: 3.102655e-01	ci right 3.286398e-01	k: 3194	n:10000
BRCA1   10000 perm   3 sec   (3403 perm/sec)   p_kst 3.194000e-01   p_cons 7.627000e-01   p_joint 4.937000e-01

Outputting figure to mutsig2_images.part000000000017/BRCA1.6_5750_10000_0.3194_0.7627_0.4937.png
                gene_name: BRCA1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 40 percent done.
BRD1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.461939e-02	ci left: 2.602281e-01	ci right 2.777067e-01	k: 2689	n:10000
Cons ci ratio: 1.165621e-01	ci left: 9.564778e-02	ci right 1.075854e-01	k: 1015	n:10000
KS ci ratio: 2.639009e-02	ci left: 6.789163e-01	ci right 6.971741e-01	k: 6881	n:10000
BRD1   10000 perm   2 sec   (5251 perm/sec)   p_kst 6.881000e-01   p_cons 1.015000e-01   p_joint 2.689000e-01

Joint ci ratio: 3.751408e-02	ci left: 3.464730e-01	ci right 3.597697e-01	k: 7062	n:20000
Cons ci ratio: 8.144539e-02	ci left: 9.955670e-02	ci right 1.080589e-01	k: 2075	n:20000
KS ci ratio: 1.857213e-02	ci left: 6.836888e-01	ci right 6.965558e-01	k: 13803	n:20000
BRD1   20000 perm   4 sec   (4548 perm/sec)   p_kst 6.901500e-01   p_cons 1.037500e-01   p_joint 3.531000e-01

Outputting figure to mutsig2_images.part000000000017/BRD1.5_3225_20000_0.69015_0.10375_0.3531.png
                gene_name: BRD1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 42 percent done.
BMPER
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.954934e-02	ci left: 1.535515e-01	ci right 1.680467e-01	k: 1607	n:10000
Cons ci ratio: 1.543320e-01	ci left: 5.590576e-02	ci right 6.535220e-02	k: 605	n:10000
KS ci ratio: 1.302908e-01	ci left: 7.756782e-02	ci right 8.847654e-02	k: 829	n:10000
BMPER   10000 perm   2 sec   (5467 perm/sec)   p_kst 8.290000e-02   p_cons 6.050000e-02   p_joint 1.607000e-01

Joint ci ratio: 1.054301e-01	ci left: 6.123167e-02	ci right 6.809556e-02	k: 1292	n:20000
Cons ci ratio: 1.092757e-01	ci left: 5.713750e-02	ci right 6.379100e-02	k: 1208	n:20000
KS ci ratio: 9.308249e-02	ci left: 7.764631e-02	ci right 8.527589e-02	k: 1628	n:20000
BMPER   20000 perm   4 sec   (4903 perm/sec)   p_kst 8.140000e-02   p_cons 6.040000e-02   p_joint 6.460000e-02

Joint ci ratio: 8.934188e-02	ci left: 5.759973e-02	ci right 6.301914e-02	k: 1808	n:30000
Cons ci ratio: 8.830750e-02	ci left: 5.890524e-02	ci right 6.438003e-02	k: 1848	n:30000
KS ci ratio: 7.629990e-02	ci left: 7.777290e-02	ci right 8.397522e-02	k: 2425	n:30000
BMPER   30000 perm   6 sec   (4643 perm/sec)   p_kst 8.083333e-02   p_cons 6.160000e-02   p_joint 6.026667e-02

Outputting figure to mutsig2_images.part000000000017/BMPER.5_2118_30000_0.080833_0.0616_0.060267.png
                gene_name: BMPER
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.063 

Current progress: 44 percent done.
BRPF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.092186e-02	ci left: 7.700281e-01	ci right 7.864095e-01	k: 7783	n:10000
Cons ci ratio: 2.807683e-02	ci left: 6.515256e-01	ci right 6.701806e-01	k: 6609	n:10000
KS ci ratio: 3.221025e-02	ci left: 5.872089e-01	ci right 6.065346e-01	k: 5969	n:10000
BRPF3   10000 perm   2 sec   (4433 perm/sec)   p_kst 5.969000e-01   p_cons 6.609000e-01   p_joint 7.783000e-01

Outputting figure to mutsig2_images.part000000000017/BRPF3.5_3666_10000_0.5969_0.6609_0.7783.png
                gene_name: BRPF3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 46 percent done.
BTBD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.908455e-02	ci left: 4.915510e-01	ci right 5.112482e-01	k: 5014	n:10000
Cons ci ratio: 2.750059e-03	ci left: 9.936409e-01	ci right 9.964588e-01	k: 9952	n:10000
KS ci ratio: 5.278129e-02	ci left: 3.460122e-01	ci right 3.648721e-01	k: 3554	n:10000
BTBD10   10000 perm   2 sec   (4903 perm/sec)   p_kst 3.554000e-01   p_cons 9.952000e-01   p_joint 5.014000e-01

Outputting figure to mutsig2_images.part000000000017/BTBD10.5_1460_10000_0.3554_0.9952_0.5014.png
                gene_name: BTBD10
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 47 percent done.
BMPR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.968030e-02	ci left: 7.907046e-01	ci right 8.065211e-01	k: 7987	n:10000
KS ci ratio: 1.184452e-02	ci left: 9.108030e-01	ci right 9.217531e-01	k: 9164	n:10000
BMPR1A   10000 perm   2 sec   (5379 perm/sec)   p_kst 9.164000e-01   p_cons 7.987000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BMPR1A.4_1643_10000_0.9164_0.7987_1.png
                gene_name: BMPR1A
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
BMX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.374239e-02	ci left: 8.843180e-01	ci right 8.966535e-01	k: 8906	n:10000
Cons ci ratio: 1.799927e-02	ci left: 8.183233e-01	ci right 8.332864e-01	k: 8259	n:10000
KS ci ratio: 2.192571e-02	ci left: 7.532242e-01	ci right 7.700231e-01	k: 7617	n:10000
BMX   10000 perm   2 sec   (4592 perm/sec)   p_kst 7.617000e-01   p_cons 8.259000e-01   p_joint 8.906000e-01

Outputting figure to mutsig2_images.part000000000017/BMX.4_2100_10000_0.7617_0.8259_0.8906.png
                gene_name: BMX
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 51 percent done.
BPIL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.049971e-02	ci left: 3.663941e-01	ci right 3.854782e-01	k: 3759	n:10000
Cons ci ratio: 1.745238e-02	ci left: 8.271707e-01	ci right 8.418339e-01	k: 8346	n:10000
KS ci ratio: 1.134786e-01	ci left: 1.005192e-01	ci right 1.127110e-01	k: 1065	n:10000
BPIL2   10000 perm   2 sec   (4905 perm/sec)   p_kst 1.065000e-01   p_cons 8.346000e-01   p_joint 3.759000e-01

Joint ci ratio: 4.277307e-02	ci left: 2.893804e-01	ci right 3.020790e-01	k: 5914	n:20000
Cons ci ratio: 1.227752e-02	ci left: 8.307946e-01	ci right 8.411076e-01	k: 16720	n:20000
KS ci ratio: 8.045436e-02	ci left: 1.018153e-01	ci right 1.103996e-01	k: 2121	n:20000
BPIL2   20000 perm   5 sec   (4388 perm/sec)   p_kst 1.060500e-01   p_cons 8.360000e-01   p_joint 2.957000e-01

Outputting figure to mutsig2_images.part000000000017/BPIL2.4_1584_20000_0.10605_0.836_0.2957.png
                gene_name: BPIL2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 53 percent done.
BPIL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.511594e-02	ci left: 2.572598e-01	ci right 2.746767e-01	k: 2659	n:10000
Cons ci ratio: 1.206345e-01	ci left: 8.971071e-02	ci right 1.013261e-01	k: 954	n:10000
KS ci ratio: 4.739627e-02	ci left: 3.964531e-01	ci right 4.158017e-01	k: 4061	n:10000
BPIL3   10000 perm   2 sec   (5757 perm/sec)   p_kst 4.061000e-01   p_cons 9.540000e-02   p_joint 2.659000e-01

Joint ci ratio: 6.395096e-02	ci left: 1.530687e-01	ci right 1.632309e-01	k: 3162	n:20000
Cons ci ratio: 8.233326e-02	ci left: 9.759325e-02	ci right 1.060229e-01	k: 2035	n:20000
KS ci ratio: 3.347227e-02	ci left: 3.999310e-01	ci right 4.135961e-01	k: 8135	n:20000
BPIL3   20000 perm   4 sec   (4764 perm/sec)   p_kst 4.067500e-01   p_cons 1.017500e-01   p_joint 1.581000e-01

Outputting figure to mutsig2_images.part000000000017/BPIL3.4_1421_20000_0.40675_0.10175_0.1581.png
                gene_name: BPIL3
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 54 percent done.
BRD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.915886e-02	ci left: 7.993290e-01	ci right 8.148917e-01	k: 8072	n:10000
Cons ci ratio: 7.936649e-02	ci left: 1.882589e-01	ci right 2.039185e-01	k: 1960	n:10000
KS ci ratio: 1.601493e-02	ci left: 8.499848e-01	ci right 8.638066e-01	k: 8570	n:10000
BRD4   10000 perm   2 sec   (4335 perm/sec)   p_kst 8.570000e-01   p_cons 1.960000e-01   p_joint 8.072000e-01

Outputting figure to mutsig2_images.part000000000017/BRD4.4_4180_10000_0.857_0.196_0.8072.png
                gene_name: BRD4
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 56 percent done.
BRD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.444450e-02	ci left: 7.110866e-01	ci right 7.287851e-01	k: 7200	n:10000
Cons ci ratio: 2.409325e-02	ci left: 7.169415e-01	ci right 7.345268e-01	k: 7258	n:10000
KS ci ratio: 3.202987e-02	ci left: 5.899187e-01	ci right 6.092232e-01	k: 5996	n:10000
BRD7   10000 perm   2 sec   (4254 perm/sec)   p_kst 5.996000e-01   p_cons 7.258000e-01   p_joint 7.200000e-01

Outputting figure to mutsig2_images.part000000000017/BRD7.4_2027_10000_0.5996_0.7258_0.72.png
                gene_name: BRD7
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 58 percent done.
BRE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.329191e-02	ci left: 3.416399e-01	ci right 3.604469e-01	k: 3510	n:10000
Cons ci ratio: 8.748333e-02	ci left: 1.598358e-01	ci right 1.745586e-01	k: 1671	n:10000
KS ci ratio: 3.181024e-02	ci left: 5.932311e-01	ci right 6.125089e-01	k: 6029	n:10000
BRE   10000 perm   2 sec   (5981 perm/sec)   p_kst 6.029000e-01   p_cons 1.671000e-01   p_joint 3.510000e-01

Outputting figure to mutsig2_images.part000000000017/BRE.4_1407_10000_0.6029_0.1671_0.351.png
                gene_name: BRE
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 60 percent done.
BTBD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
Cons ci ratio: 1.144422e-01	ci left: 9.895988e-02	ci right 1.110713e-01	k: 1049	n:10000
KS ci ratio: 2.128566e-01	ci left: 2.930086e-02	ci right 3.637471e-02	k: 327	n:10000
BTBD1   10000 perm   2 sec   (4929 perm/sec)   p_kst 3.270000e-02   p_cons 1.049000e-01   p_joint 3.600000e-02

Joint ci ratio: 1.798538e-01	ci left: 2.111042e-02	ci right 2.532976e-02	k: 463	n:20000
Cons ci ratio: 8.041197e-02	ci left: 1.019135e-01	ci right 1.105014e-01	k: 2123	n:20000
KS ci ratio: 1.484233e-01	ci left: 3.119383e-02	ci right 3.624291e-02	k: 673	n:20000
BTBD1   20000 perm   4 sec   (4458 perm/sec)   p_kst 3.365000e-02   p_cons 1.061500e-01   p_joint 2.315000e-02

Joint ci ratio: 1.354315e-01	ci left: 2.532406e-02	ci right 2.903493e-02	k: 814	n:30000
Cons ci ratio: 6.601641e-02	ci left: 1.016842e-01	ci right 1.086592e-01	k: 3154	n:30000
KS ci ratio: 1.193079e-01	ci left: 3.265748e-02	ci right 3.683325e-02	k: 1041	n:30000
BTBD1   30000 perm   7 sec   (4086 perm/sec)   p_kst 3.470000e-02   p_cons 1.051333e-01   p_joint 2.713333e-02

Joint ci ratio: 1.141752e-01	ci left: 2.698836e-02	ci right 3.028054e-02	k: 1144	n:40000
Cons ci ratio: 6.060006e-02	ci left: 9.182295e-02	ci right 9.758605e-02	k: 3787	n:40000
KS ci ratio: 1.023486e-01	ci left: 3.356163e-02	ci right 3.720622e-02	k: 1414	n:40000
BTBD1   40000 perm   10 sec   (3923 perm/sec)   p_kst 3.535000e-02   p_cons 9.467500e-02   p_joint 2.860000e-02

Joint ci ratio: 9.682545e-02	ci left: 3.020110e-02	ci right 3.329358e-02	k: 1586	n:50000
Cons ci ratio: 5.416455e-02	ci left: 9.224590e-02	ci right 9.740125e-02	k: 4740	n:50000
KS ci ratio: 9.161748e-02	ci left: 3.369952e-02	ci right 3.695472e-02	k: 1765	n:50000
BTBD1   50000 perm   13 sec   (3849 perm/sec)   p_kst 3.530000e-02   p_cons 9.480000e-02   p_joint 3.172000e-02

Outputting figure to mutsig2_images.part000000000017/BTBD1.4_1481_50000_0.0353_0.0948_0.03172.png
                gene_name: BTBD1
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 61 percent done.
BTBD16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.530263e-02	ci left: 8.610043e-01	ci right 8.743807e-01	k: 8678	n:10000
KS ci ratio: 2.815202e-02	ci left: 6.503180e-01	ci right 6.689889e-01	k: 6597	n:10000
BTBD16   10000 perm   2 sec   (5477 perm/sec)   p_kst 6.597000e-01   p_cons 8.678000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BTBD16.4_1581_10000_0.6597_0.8678_1.png
                gene_name: BTBD16
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
BNIP3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.085809e-01	ci left: 1.090053e-01	ci right 1.216198e-01	k: 1152	n:10000
Cons ci ratio: 1.405162e-01	ci left: 6.710566e-02	ci right 7.734523e-02	k: 721	n:10000
KS ci ratio: 8.802117e-02	ci left: 1.581661e-01	ci right 1.728293e-01	k: 1654	n:10000
BNIP3L   10000 perm   2 sec   (5725 perm/sec)   p_kst 1.654000e-01   p_cons 7.210000e-02   p_joint 1.152000e-01

Joint ci ratio: 8.103225e-02	ci left: 1.004895e-01	ci right 1.090258e-01	k: 2094	n:20000
Cons ci ratio: 9.790809e-02	ci left: 7.055582e-02	ci right 7.786855e-02	k: 1483	n:20000
KS ci ratio: 6.343949e-02	ci left: 1.551906e-01	ci right 1.654083e-01	k: 3205	n:20000
BNIP3L   20000 perm   4 sec   (4768 perm/sec)   p_kst 1.602500e-01   p_cons 7.415000e-02   p_joint 1.047000e-01

Outputting figure to mutsig2_images.part000000000017/BNIP3L.3_684_20000_0.16025_0.07415_0.1047.png
                gene_name: BNIP3L
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 65 percent done.
BPI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.901168e-03	ci left: 9.352693e-01	ci right 9.446723e-01	k: 9401	n:10000
Cons ci ratio: 2.208266e-02	ci left: 7.505939e-01	ci right 7.674550e-01	k: 7591	n:10000
KS ci ratio: 3.528161e-02	ci left: 5.425901e-01	ci right 5.621794e-01	k: 5524	n:10000
BPI   10000 perm   2 sec   (5117 perm/sec)   p_kst 5.524000e-01   p_cons 7.591000e-01   p_joint 9.401000e-01

Outputting figure to mutsig2_images.part000000000017/BPI.3_1524_10000_0.5524_0.7591_0.9401.png
                gene_name: BPI
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.94 

Current progress: 67 percent done.
BRAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.313530e-02	ci left: 5.734637e-01	ci right 5.928878e-01	k: 5832	n:10000
Cons ci ratio: 2.396016e-02	ci left: 7.191628e-01	ci right 7.367042e-01	k: 7280	n:10000
KS ci ratio: 4.270515e-02	ci left: 4.473998e-01	ci right 4.670251e-01	k: 4572	n:10000
BRAP   10000 perm   2 sec   (5585 perm/sec)   p_kst 4.572000e-01   p_cons 7.280000e-01   p_joint 5.832000e-01

Outputting figure to mutsig2_images.part000000000017/BRAP.3_1827_10000_0.4572_0.728_0.5832.png
                gene_name: BRAP
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 68 percent done.
BRD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.780502e-02	ci left: 8.214750e-01	ci right 8.363328e-01	k: 8290	n:10000
Cons ci ratio: 1.936165e-02	ci left: 7.959800e-01	ci right 8.116426e-01	k: 8039	n:10000
KS ci ratio: 2.899040e-02	ci left: 6.369381e-01	ci right 6.557766e-01	k: 6464	n:10000
BRD2   10000 perm   2 sec   (5244 perm/sec)   p_kst 6.464000e-01   p_cons 8.039000e-01   p_joint 8.290000e-01

Outputting figure to mutsig2_images.part000000000017/BRD2.3_2454_10000_0.6464_0.8039_0.829.png
                gene_name: BRD2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 70 percent done.
BRD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.664326e-02	ci left: 8.400990e-01	ci right 8.542981e-01	k: 8473	n:10000
KS ci ratio: 3.351152e-02	ci left: 5.679478e-01	ci right 5.874070e-01	k: 5777	n:10000
BRD9   10000 perm   2 sec   (5133 perm/sec)   p_kst 5.777000e-01   p_cons 8.473000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BRD9.3_1858_10000_0.5777_0.8473_1.png
                gene_name: BRD9
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
BRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.612577e-02	ci left: 8.482515e-01	ci right 8.621409e-01	k: 8553	n:10000
KS ci ratio: 3.084891e-02	ci left: 6.078915e-01	ci right 6.270400e-01	k: 6175	n:10000
BRF1   10000 perm   2 sec   (4437 perm/sec)   p_kst 6.175000e-01   p_cons 8.553000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BRF1.3_2106_10000_0.6175_0.8553_1.png
                gene_name: BRF1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
BRF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.304623e-01	ci left: 7.737381e-02	ci right 8.827067e-02	k: 827	n:10000
Cons ci ratio: 6.518270e-02	ci left: 2.568641e-01	ci right 2.742727e-01	k: 2655	n:10000
KS ci ratio: 3.699811e-01	ci left: 9.049096e-03	ci right 1.324298e-02	k: 110	n:10000
BRF2   10000 perm   2 sec   (6051 perm/sec)   p_kst 1.100000e-02   p_cons 2.655000e-01   p_joint 8.270000e-02

Joint ci ratio: 1.261564e-01	ci left: 4.313792e-02	ci right 4.899497e-02	k: 920	n:20000
Cons ci ratio: 4.499479e-02	ci left: 2.688694e-01	ci right 2.812960e-01	k: 5501	n:20000
KS ci ratio: 2.575473e-01	ci left: 9.975082e-03	ci right 1.296948e-02	k: 228	n:20000
BRF2   20000 perm   4 sec   (4866 perm/sec)   p_kst 1.140000e-02   p_cons 2.750500e-01   p_joint 4.600000e-02

Joint ci ratio: 1.043807e-01	ci left: 4.255166e-02	ci right 4.727031e-02	k: 1346	n:30000
Cons ci ratio: 3.678735e-02	ci left: 2.694887e-01	ci right 2.796217e-01	k: 8236	n:30000
KS ci ratio: 2.089083e-01	ci left: 1.038754e-02	ci right 1.284175e-02	k: 347	n:30000
BRF2   30000 perm   7 sec   (4089 perm/sec)   p_kst 1.156667e-02   p_cons 2.745333e-01   p_joint 4.486667e-02

Joint ci ratio: 1.062646e-01	ci left: 3.114908e-02	ci right 3.466916e-02	k: 1315	n:40000
Cons ci ratio: 3.283996e-02	ci left: 2.583173e-01	ci right 2.669671e-01	k: 10505	n:40000
KS ci ratio: 1.819149e-01	ci left: 1.043048e-02	ci right 1.254134e-02	k: 458	n:40000
BRF2   40000 perm   10 sec   (3811 perm/sec)   p_kst 1.145000e-02   p_cons 2.626250e-01   p_joint 3.287500e-02

Joint ci ratio: 1.074674e-01	ci left: 2.452533e-02	ci right 2.733007e-02	k: 1295	n:50000
Cons ci ratio: 2.943605e-02	ci left: 2.579506e-01	ci right 2.656771e-01	k: 13090	n:50000
KS ci ratio: 1.605650e-01	ci left: 1.083350e-02	ci right 1.274381e-02	k: 588	n:50000
BRF2   50000 perm   13 sec   (3709 perm/sec)   p_kst 1.176000e-02   p_cons 2.618000e-01   p_joint 2.590000e-02

Joint ci ratio: 1.092226e-01	ci left: 1.986759e-02	ci right 2.217907e-02	k: 1260	n:60000
Cons ci ratio: 2.689591e-02	ci left: 2.579372e-01	ci right 2.649859e-01	k: 15687	n:60000
KS ci ratio: 1.451075e-01	ci left: 1.114408e-02	ci right 1.290359e-02	k: 720	n:60000
BRF2   60000 perm   17 sec   (3607 perm/sec)   p_kst 1.200000e-02   p_cons 2.614500e-01   p_joint 2.100000e-02

Joint ci ratio: 8.067366e-02	ci left: 3.131071e-02	ci right 3.395679e-02	k: 2283	n:70000
Cons ci ratio: 2.491338e-02	ci left: 2.580055e-01	ci right 2.645286e-01	k: 18288	n:70000
KS ci ratio: 1.352552e-01	ci left: 1.105461e-02	ci right 1.267194e-02	k: 829	n:70000
BRF2   70000 perm   19 sec   (3656 perm/sec)   p_kst 1.184286e-02   p_cons 2.612571e-01   p_joint 3.261429e-02

Joint ci ratio: 8.199642e-02	ci left: 2.663494e-02	ci right 2.892448e-02	k: 2221	n:80000
Cons ci ratio: 2.328527e-02	ci left: 2.585320e-01	ci right 2.646353e-01	k: 20926	n:80000
KS ci ratio: 1.273079e-01	ci left: 1.096635e-02	ci right 1.246937e-02	k: 936	n:80000
BRF2   80000 perm   22 sec   (3618 perm/sec)   p_kst 1.170000e-02   p_cons 2.615750e-01   p_joint 2.776250e-02

Joint ci ratio: 7.560894e-02	ci left: 2.790242e-02	ci right 3.010585e-02	k: 2609	n:90000
Cons ci ratio: 2.195096e-02	ci left: 2.587529e-01	ci right 2.645069e-01	k: 23546	n:90000
KS ci ratio: 1.195190e-01	ci left: 1.110472e-02	ci right 1.252700e-02	k: 1062	n:90000
BRF2   90000 perm   25 sec   (3624 perm/sec)   p_kst 1.180000e-02   p_cons 2.616222e-01   p_joint 2.898889e-02

Joint ci ratio: 8.022244e-02	ci left: 2.238366e-02	ci right 2.426413e-02	k: 2331	n:100000
Cons ci ratio: 2.077630e-02	ci left: 2.597948e-01	ci right 2.652590e-01	k: 26252	n:100000
KS ci ratio: 1.130526e-01	ci left: 1.120794e-02	ci right 1.256059e-02	k: 1187	n:100000
BRF2   100000 perm   28 sec   (3620 perm/sec)   p_kst 1.187000e-02   p_cons 2.625200e-01   p_joint 2.331000e-02

Joint ci ratio: 7.865416e-02	ci left: 2.121257e-02	ci right 2.295821e-02	k: 2428	n:110000
Cons ci ratio: 1.981701e-02	ci left: 2.597747e-01	ci right 2.649833e-01	k: 28861	n:110000
KS ci ratio: 1.079924e-01	ci left: 1.119676e-02	ci right 1.248372e-02	k: 1301	n:110000
BRF2   110000 perm   30 sec   (3610 perm/sec)   p_kst 1.182727e-02   p_cons 2.623727e-01   p_joint 2.207273e-02

Joint ci ratio: 7.593540e-02	ci left: 2.089939e-02	ci right 2.255717e-02	k: 2606	n:120000
Cons ci ratio: 1.897940e-02	ci left: 2.597629e-01	ci right 2.647486e-01	k: 31470	n:120000
KS ci ratio: 1.036300e-01	ci left: 1.117232e-02	ci right 1.240144e-02	k: 1413	n:120000
BRF2   120000 perm   33 sec   (3593 perm/sec)   p_kst 1.177500e-02   p_cons 2.622500e-01   p_joint 2.171667e-02

Joint ci ratio: 7.131211e-02	ci left: 2.190471e-02	ci right 2.353206e-02	k: 2952	n:130000
Cons ci ratio: 1.826444e-02	ci left: 2.592354e-01	ci right 2.640214e-01	k: 34011	n:130000
KS ci ratio: 9.946058e-02	ci left: 1.122006e-02	ci right 1.240187e-02	k: 1534	n:130000
BRF2   130000 perm   36 sec   (3566 perm/sec)   p_kst 1.180000e-02   p_cons 2.616231e-01   p_joint 2.270769e-02

Outputting figure to mutsig2_images.part000000000017/BRF2.3_1276_130000_0.0118_0.26162_0.022708.png
                gene_name: BRF2
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 75 percent done.
BRS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.827391e-02	ci left: 8.138514e-01	ci right 8.289609e-01	k: 8215	n:10000
Cons ci ratio: 1.966806e-02	ci left: 7.909075e-01	ci right 8.067181e-01	k: 7989	n:10000
KS ci ratio: 2.879412e-02	ci left: 6.400560e-01	ci right 6.588569e-01	k: 6495	n:10000
BRS3   10000 perm   2 sec   (6147 perm/sec)   p_kst 6.495000e-01   p_cons 7.989000e-01   p_joint 8.215000e-01

Outputting figure to mutsig2_images.part000000000017/BRS3.3_1212_10000_0.6495_0.7989_0.8215.png
                gene_name: BRS3
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 77 percent done.
BTBD12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.458799e-02	ci left: 8.718340e-01	ci right 8.847448e-01	k: 8784	n:10000
Cons ci ratio: 2.643313e-02	ci left: 6.782109e-01	ci right 6.964798e-01	k: 6874	n:10000
KS ci ratio: 3.935118e-02	ci left: 4.881520e-01	ci right 5.078491e-01	k: 4980	n:10000
BTBD12   10000 perm   3 sec   (3537 perm/sec)   p_kst 4.980000e-01   p_cons 6.874000e-01   p_joint 8.784000e-01

Outputting figure to mutsig2_images.part000000000017/BTBD12.3_5561_10000_0.498_0.6874_0.8784.png
                gene_name: BTBD12
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 79 percent done.
BNIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.719645e-02	ci left: 2.452932e-01	ci right 2.624504e-01	k: 2538	n:10000
Cons ci ratio: 9.703224e-02	ci left: 1.334506e-01	ci right 1.471597e-01	k: 1402	n:10000
KS ci ratio: 3.967515e-02	ci left: 4.840539e-01	ci right 5.037497e-01	k: 4939	n:10000
BNIP2   10000 perm   2 sec   (5496 perm/sec)   p_kst 4.939000e-01   p_cons 1.402000e-01   p_joint 2.538000e-01

Outputting figure to mutsig2_images.part000000000017/BNIP2.2_1348_10000_0.4939_0.1402_0.2538.png
                gene_name: BNIP2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 81 percent done.
BOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.846994e-02	ci left: 1.567914e-01	ci right 1.714049e-01	k: 1640	n:10000
Cons ci ratio: 2.975552e-02	ci left: 6.248728e-01	ci right 6.438489e-01	k: 6344	n:10000
KS ci ratio: 3.469974e-01	ci left: 1.041531e-02	ci right 1.487532e-02	k: 125	n:10000
BOD1   10000 perm   2 sec   (6048 perm/sec)   p_kst 1.250000e-02   p_cons 6.344000e-01   p_joint 1.640000e-01

Joint ci ratio: 7.423726e-02	ci left: 1.177895e-01	ci right 1.269206e-01	k: 2446	n:20000
Cons ci ratio: 2.088735e-02	ci left: 6.310942e-01	ci right 6.444657e-01	k: 12756	n:20000
KS ci ratio: 2.569803e-01	ci left: 1.002189e-02	ci right 1.302265e-02	k: 229	n:20000
BOD1   20000 perm   4 sec   (4488 perm/sec)   p_kst 1.145000e-02   p_cons 6.378000e-01   p_joint 1.223000e-01

Joint ci ratio: 5.163864e-02	ci left: 1.569563e-01	ci right 1.653094e-01	k: 4833	n:30000
Cons ci ratio: 1.703872e-02	ci left: 6.327661e-01	ci right 6.436738e-01	k: 19147	n:30000
KS ci ratio: 2.044948e-01	ci left: 1.086192e-02	ci right 1.336723e-02	k: 362	n:30000
BOD1   30000 perm   7 sec   (4436 perm/sec)   p_kst 1.206667e-02   p_cons 6.382333e-01   p_joint 1.611000e-01

Joint ci ratio: 5.223302e-02	ci left: 1.201918e-01	ci right 1.266630e-01	k: 4936	n:40000
Cons ci ratio: 1.472281e-02	ci left: 6.345465e-01	ci right 6.439832e-01	k: 25571	n:40000
KS ci ratio: 1.747381e-01	ci left: 1.133853e-02	ci right 1.353310e-02	k: 496	n:40000
BOD1   40000 perm   9 sec   (4281 perm/sec)   p_kst 1.240000e-02   p_cons 6.392750e-01   p_joint 1.234000e-01

Joint ci ratio: 6.671015e-03	ci left: 8.705748e-01	ci right 8.764217e-01	k: 43676	n:50000
Cons ci ratio: 1.320153e-02	ci left: 6.338900e-01	ci right 6.423340e-01	k: 31906	n:50000
KS ci ratio: 1.550634e-01	ci left: 1.164070e-02	ci right 1.361649e-02	k: 630	n:50000
BOD1   50000 perm   12 sec   (4113 perm/sec)   p_kst 1.260000e-02   p_cons 6.381200e-01   p_joint 8.735200e-01

Joint ci ratio: 6.062702e-03	ci left: 8.718228e-01	ci right 8.771410e-01	k: 52470	n:60000
Cons ci ratio: 1.202143e-02	ci left: 6.354092e-01	ci right 6.431106e-01	k: 38356	n:60000
KS ci ratio: 1.414774e-01	ci left: 1.173889e-02	ci right 1.354204e-02	k: 757	n:60000
BOD1   60000 perm   15 sec   (4062 perm/sec)   p_kst 1.261667e-02   p_cons 6.392667e-01   p_joint 8.745000e-01

Joint ci ratio: 5.623899e-03	ci left: 8.715910e-01	ci right 8.765208e-01	k: 61185	n:70000
Cons ci ratio: 1.111856e-02	ci left: 6.361593e-01	ci right 6.432863e-01	k: 44781	n:70000
KS ci ratio: 1.325346e-01	ci left: 1.152424e-02	ci right 1.317369e-02	k: 863	n:70000
BOD1   70000 perm   17 sec   (4089 perm/sec)   p_kst 1.232857e-02   p_cons 6.397286e-01   p_joint 8.740714e-01

Joint ci ratio: 3.157800e-02	ci left: 1.589561e-01	ci right 1.640685e-01	k: 12920	n:80000
Cons ci ratio: 1.039520e-02	ci left: 6.366250e-01	ci right 6.432899e-01	k: 51197	n:80000
KS ci ratio: 1.228108e-01	ci left: 1.180218e-02	ci right 1.335847e-02	k: 1005	n:80000
BOD1   80000 perm   20 sec   (4091 perm/sec)   p_kst 1.256250e-02   p_cons 6.399625e-01   p_joint 1.615000e-01

Joint ci ratio: 4.953129e-03	ci left: 8.721837e-01	ci right 8.765255e-01	k: 78693	n:90000
Cons ci ratio: 9.807702e-03	ci left: 6.364867e-01	ci right 6.427710e-01	k: 57567	n:90000
KS ci ratio: 1.161908e-01	ci left: 1.176275e-02	ci right 1.322448e-02	k: 1123	n:90000
BOD1   90000 perm   22 sec   (4082 perm/sec)   p_kst 1.247778e-02   p_cons 6.396333e-01   p_joint 8.743667e-01

Joint ci ratio: 2.826642e-02	ci left: 1.590153e-01	ci right 1.635844e-01	k: 16129	n:100000
Cons ci ratio: 8.975564e-03	ci left: 6.530963e-01	ci right 6.589946e-01	k: 65605	n:100000
KS ci ratio: 1.104025e-01	ci left: 1.176220e-02	ci right 1.314630e-02	k: 1244	n:100000
BOD1   100000 perm   25 sec   (4056 perm/sec)   p_kst 1.244000e-02   p_cons 6.560500e-01   p_joint 1.612900e-01

Joint ci ratio: 2.713078e-02	ci left: 1.573407e-01	ci right 1.616772e-01	k: 17545	n:110000
Cons ci ratio: 8.563301e-03	ci left: 6.529473e-01	ci right 6.585718e-01	k: 72134	n:110000
KS ci ratio: 1.057939e-01	ci left: 1.167469e-02	ci right 1.298757e-02	k: 1355	n:110000
BOD1   110000 perm   28 sec   (3987 perm/sec)   p_kst 1.231818e-02   p_cons 6.557636e-01   p_joint 1.595000e-01

Joint ci ratio: 2.594277e-02	ci left: 1.577723e-01	ci right 1.619274e-01	k: 19181	n:120000
Cons ci ratio: 8.196417e-03	ci left: 6.531958e-01	ci right 6.585800e-01	k: 78707	n:120000
KS ci ratio: 1.007492e-01	ci left: 1.183027e-02	ci right 1.309346e-02	k: 1494	n:120000
BOD1   120000 perm   30 sec   (3948 perm/sec)   p_kst 1.245000e-02   p_cons 6.558917e-01   p_joint 1.598417e-01

Joint ci ratio: 2.489615e-02	ci left: 1.581640e-01	ci right 1.621589e-01	k: 20820	n:130000
Cons ci ratio: 7.878748e-03	ci left: 6.530790e-01	ci right 6.582525e-01	k: 85237	n:130000
KS ci ratio: 9.663319e-02	ci left: 1.189559e-02	ci right 1.311092e-02	k: 1624	n:130000
BOD1   130000 perm   33 sec   (3909 perm/sec)   p_kst 1.249231e-02   p_cons 6.556692e-01   p_joint 1.601538e-01

Outputting figure to mutsig2_images.part000000000017/BOD1.2_602_130000_0.012492_0.65567_0.16015.png
                gene_name: BOD1
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 82 percent done.
BRD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.959539e-02	ci left: 6.273859e-01	ci right 6.463343e-01	k: 6369	n:10000
Cons ci ratio: 4.003386e-02	ci left: 4.795567e-01	ci right 4.992495e-01	k: 4894	n:10000
KS ci ratio: 3.748370e-02	ci left: 5.124546e-01	ci right 5.321324e-01	k: 5223	n:10000
BRD3   10000 perm   2 sec   (5822 perm/sec)   p_kst 5.223000e-01   p_cons 4.894000e-01   p_joint 6.369000e-01

Outputting figure to mutsig2_images.part000000000017/BRD3.2_2225_10000_0.5223_0.4894_0.6369.png
                gene_name: BRD3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 84 percent done.
BRP44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.998038e-02	ci left: 6.213549e-01	ci right 6.403688e-01	k: 6309	n:10000
Cons ci ratio: 1.540909e-02	ci left: 8.593708e-01	ci right 8.728151e-01	k: 8662	n:10000
KS ci ratio: 4.409943e-02	ci left: 4.315362e-01	ci right 4.510980e-01	k: 4413	n:10000
BRP44   10000 perm   1 sec   (6865 perm/sec)   p_kst 4.413000e-01   p_cons 8.662000e-01   p_joint 6.309000e-01

Outputting figure to mutsig2_images.part000000000017/BRP44.2_404_10000_0.4413_0.8662_0.6309.png
                gene_name: BRP44
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 86 percent done.
BSX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.400121e-02	ci left: 4.326334e-01	ci right 4.522002e-01	k: 4424	n:10000
Cons ci ratio: 9.727431e-02	ci left: 1.328630e-01	ci right 1.465476e-01	k: 1396	n:10000
KS ci ratio: 6.988973e-02	ci left: 2.308658e-01	ci right 2.476864e-01	k: 2392	n:10000
BSX   10000 perm   2 sec   (6523 perm/sec)   p_kst 2.392000e-01   p_cons 1.396000e-01   p_joint 4.424000e-01

Outputting figure to mutsig2_images.part000000000017/BSX.2_714_10000_0.2392_0.1396_0.4424.png
                gene_name: BSX
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 88 percent done.
BTBD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.028430e-02	ci left: 1.847145e-01	ci right 2.002650e-01	k: 1924	n:10000
KS ci ratio: 1.254161e-02	ci left: 9.013439e-01	ci right 9.128177e-01	k: 9072	n:10000
BTBD3   10000 perm   2 sec   (4733 perm/sec)   p_kst 9.072000e-01   p_cons 1.924000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BTBD3.2_1585_10000_0.9072_0.1924_1.png
                gene_name: BTBD3
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
BTBD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.188850e-02	ci left: 4.569827e-01	ci right 4.766367e-01	k: 4668	n:10000
Cons ci ratio: 4.834243e-02	ci left: 3.869933e-01	ci right 4.062670e-01	k: 3966	n:10000
KS ci ratio: 1.413621e-01	ci left: 6.633192e-02	ci right 7.651945e-02	k: 713	n:10000
BTBD9   10000 perm   2 sec   (5878 perm/sec)   p_kst 7.130000e-02   p_cons 3.966000e-01   p_joint 4.668000e-01

Joint ci ratio: 4.830587e-02	ci left: 2.416798e-01	ci right 2.536936e-01	k: 4953	n:20000
Cons ci ratio: 3.429034e-02	ci left: 3.883652e-01	ci right 4.019653e-01	k: 7903	n:20000
KS ci ratio: 9.965990e-02	ci left: 6.821079e-02	ci right 7.541429e-02	k: 1435	n:20000
BTBD9   20000 perm   4 sec   (5150 perm/sec)   p_kst 7.175000e-02   p_cons 3.951500e-01   p_joint 2.476500e-01

Outputting figure to mutsig2_images.part000000000017/BTBD9.2_1978_20000_0.07175_0.39515_0.24765.png
                gene_name: BTBD9
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 91 percent done.
BTC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.896174e-02	ci left: 8.025773e-01	ci right 8.180415e-01	k: 8104	n:10000
KS ci ratio: 2.473563e-02	ci left: 7.062425e-01	ci right 7.240320e-01	k: 7152	n:10000
BTC   10000 perm   2 sec   (6351 perm/sec)   p_kst 7.152000e-01   p_cons 8.104000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BTC.2_557_10000_0.7152_0.8104_1.png
                gene_name: BTC
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
BTD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.639309e-03	ci left: 9.687871e-01	ci right 9.753341e-01	k: 9722	n:10000
Cons ci ratio: 6.398467e-02	ci left: 2.640875e-01	ci right 2.816450e-01	k: 2728	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
BTD   10000 perm   2 sec   (5326 perm/sec)   p_kst 1   p_cons 2.728000e-01   p_joint 9.722000e-01

Outputting figure to mutsig2_images.part000000000017/BTD.2_1648_10000_1_0.2728_0.9722.png
                gene_name: BTD
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 95 percent done.
BTF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.156933e-02	ci left: 7.591946e-01	ci right 7.758493e-01	k: 7676	n:10000
Cons ci ratio: 3.370417e-02	ci left: 5.651401e-01	ci right 5.846162e-01	k: 5749	n:10000
KS ci ratio: 5.989282e-02	ci left: 2.908294e-01	ci right 3.088873e-01	k: 2998	n:10000
BTF3   10000 perm   2 sec   (6661 perm/sec)   p_kst 2.998000e-01   p_cons 5.749000e-01   p_joint 7.676000e-01

Outputting figure to mutsig2_images.part000000000017/BTF3.2_645_10000_0.2998_0.5749_0.7676.png
                gene_name: BTF3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 96 percent done.
BTG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.276362e-02	ci left: 8.982632e-01	ci right 9.099002e-01	k: 9042	n:10000
Cons ci ratio: 1.026480e-02	ci left: 9.309212e-01	ci right 9.406231e-01	k: 9359	n:10000
KS ci ratio: 1.563421e-02	ci left: 8.559009e-01	ci right 8.694871e-01	k: 8628	n:10000
BTG3   10000 perm   2 sec   (5807 perm/sec)   p_kst 8.628000e-01   p_cons 9.359000e-01   p_joint 9.042000e-01

Outputting figure to mutsig2_images.part000000000017/BTG3.2_911_10000_0.8628_0.9359_0.9042.png
                gene_name: BTG3
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 98 percent done.
BTG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.665473e-02	ci left: 6.745838e-01	ci right 6.929091e-01	k: 6838	n:10000
KS ci ratio: 1.101379e-02	ci left: 9.216228e-01	ci right 9.319269e-01	k: 9269	n:10000
BTG4   10000 perm   2 sec   (5952 perm/sec)   p_kst 9.269000e-01   p_cons 6.838000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000017/BTG4.2_692_10000_0.9269_0.6838_1.png
                gene_name: BTG4
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000017
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 17 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1422>
Subject: Job 9893842: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1422>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000018> was used as the working directory.
Started at Fri Oct  5 23:54:55 2012
Results reported at Sat Oct  6 03:30:11 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000018.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000018.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 18  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000018.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  13675.09 sec.
    Max Memory :      3595 MB
    Max Swap   :      6057 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
18
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 18
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 18: processing genes 1534 - 1623
Calculating significance of each gene.
Using projection method.
1534	BTN1A1	3.624028e-01
1535	BTN2A1	5.243642e-01
1536	BTN2A2	5.528398e-01
1537	BTN3A1	1.862658e-01
1538	BTN3A2	3.569599e-01
1539	BTN3A3	2.959596e-01
1540	BTNL2	5.023663e-01
1541	BTNL3	8.166001e-01
1542	BTNL8	2.015719e-02
1543	BTNL9	1
1544	BTRC	2.454026e-01
1545	BUB1	2.133112e-01
1546	BUB1B	5.344071e-01
1547	BUB3	4.586787e-01
1548	BUD13	5.711689e-01
1549	BUD31	1
1550	BVES	3.121017e-01
1551	BYSL	1
1552	BZRAP1	7.065882e-01
1553	BZW1	4.640961e-01
1554	BZW2	5.396443e-01
1555	C10orf10	1
1556	C10orf107	1
1557	C10orf11	2.221260e-02
1558	C10orf111	1
1559	C10orf113	2.482770e-01
1560	C10orf114	4.478235e-01
1561	C10orf116	1
1562	C10orf118	6.106509e-01
1563	C10orf119	8.235820e-01
1564	C10orf12	4.720933e-01
1565	C10orf120	1.062567e-01
1566	C10orf125	1
1567	C10orf128	2.092126e-01
1568	C10orf129	1
1569	C10orf137	1.613694e-01
1570	C10orf140	6.721222e-01
1571	C10orf18	9.778271e-01
1572	C10orf2	9.187087e-01
1573	C10orf25	3.054007e-01
1574	C10orf26	7.804132e-01
1575	C10orf27	8.656005e-01
1576	C10orf28	6.893783e-01
1577	C10orf32	4.286176e-01
1578	C10orf35	2.025352e-01
1579	C10orf46	5.778039e-01
1580	C10orf47	5.053867e-01
1581	C10orf53	1
1582	C10orf54	1
1583	C10orf57	1
1584	C10orf58	2.898311e-01
1585	C10orf62	1
1586	C10orf67	1
1587	C10orf68	8.278989e-01
1588	C10orf71	1.682730e-01
1589	C10orf72	4.537506e-02
1590	C10orf76	4.359027e-01
1591	C10orf78	6.022763e-01
1592	C10orf79	3.057162e-01
In gene C10orf81 the following bins exceed PROBCAP:
    COAD-AA-3560	categ 6	N = 1136    n = 1	mu =   2.76e-07
1593	C10orf81	5.177991e-02
1594	C10orf82	4.418484e-01
1595	C10orf84	1.026406e-02
1596	C10orf88	2.287303e-01
1597	C10orf90	4.036158e-03
1598	C10orf91	1
1599	C10orf93	3.865057e-01
1600	C10orf96	7.269114e-03
1601	C10orf99	1
1602	C11orf1	1
1603	C11orf10	2.065443e-01
1604	C11orf16	5.348151e-01
1605	C11orf17	2.782465e-01
1606	C11orf2	8.923976e-01
1607	C11orf20	1
1608	C11orf24	5.171557e-01
1609	C11orf30	3.935724e-01
1610	C11orf31	1
1611	C11orf35	1
1612	C11orf40	1.404344e-01
1613	C11orf41	4.451899e-01
1614	C11orf42	1
1615	C11orf45	1
1616	C11orf46	1
1617	C11orf48	1
1618	C11orf49	6.892883e-01
1619	C11orf51	1
1620	C11orf52	1
1621	C11orf53	3.311982e-01
1622	C11orf54	5.714870e-01
1623	C11orf57	3.789538e-02
Done

Running MutSig 2:
Scatter job 18: processing genes 1534 - 1623
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C10orf79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.197356e-01	ci left: 9.097541e-02	ci right 1.026607e-01	k: 967	n:10000
Cons ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
KS ci ratio: 4.780142e-02	ci left: 3.923700e-01	ci right 4.116871e-01	k: 4020	n:10000
C10orf79   10000 perm   3 sec   (3614 perm/sec)   p_kst 4.020000e-01   p_cons 9.300000e-03   p_joint 9.670000e-02

Joint ci ratio: 1.399415e-01	ci left: 3.510267e-02	ci right 4.043280e-02	k: 754	n:20000
Cons ci ratio: 2.764887e-01	ci left: 8.574499e-03	ci right 1.137073e-02	k: 198	n:20000
KS ci ratio: 3.366723e-02	ci left: 3.971389e-01	ci right 4.107890e-01	k: 8079	n:20000
C10orf79   20000 perm   10 sec   (1906 perm/sec)   p_kst 4.039500e-01   p_cons 9.900000e-03   p_joint 3.770000e-02

Joint ci ratio: 1.333438e-01	ci left: 2.613009e-02	ci right 2.989539e-02	k: 839	n:30000
Cons ci ratio: 2.229420e-01	ci left: 9.062469e-03	ci right 1.136720e-02	k: 305	n:30000
KS ci ratio: 2.680461e-02	ci left: 4.105805e-01	ci right 4.217691e-01	k: 12485	n:30000
C10orf79   30000 perm   14 sec   (2172 perm/sec)   p_kst 4.161667e-01   p_cons 1.016667e-02   p_joint 2.796667e-02

Joint ci ratio: 1.169928e-01	ci left: 2.570066e-02	ci right 2.891846e-02	k: 1091	n:40000
Cons ci ratio: 1.869226e-01	ci left: 9.857902e-03	ci right 1.191403e-02	k: 434	n:40000
KS ci ratio: 2.328283e-02	ci left: 4.098907e-01	ci right 4.195717e-01	k: 16589	n:40000
C10orf79   40000 perm   17 sec   (2318 perm/sec)   p_kst 4.147250e-01   p_cons 1.085000e-02   p_joint 2.727500e-02

Joint ci ratio: 1.462744e-01	ci left: 1.312339e-02	ci right 1.521358e-02	k: 707	n:50000
Cons ci ratio: 1.737267e-01	ci left: 9.203821e-03	ci right 1.097375e-02	k: 503	n:50000
KS ci ratio: 2.121441e-02	ci left: 4.014515e-01	ci right 4.100794e-01	k: 20288	n:50000
C10orf79   50000 perm   21 sec   (2411 perm/sec)   p_kst 4.057600e-01   p_cons 1.006000e-02   p_joint 1.414000e-02

Joint ci ratio: 8.530140e-02	ci left: 3.254781e-02	ci right 3.546416e-02	k: 2039	n:60000
Cons ci ratio: 1.676148e-01	ci left: 8.275796e-03	ci right 9.805593e-03	k: 541	n:60000
KS ci ratio: 1.937659e-02	ci left: 4.015677e-01	ci right 4.094415e-01	k: 24330	n:60000
C10orf79   60000 perm   24 sec   (2472 perm/sec)   p_kst 4.055000e-01   p_cons 9.016667e-03   p_joint 3.398333e-02

Joint ci ratio: 8.688518e-02	ci left: 2.702805e-02	ci right 2.949697e-02	k: 1977	n:70000
Cons ci ratio: 1.369346e-01	ci left: 1.077852e-02	ci right 1.237663e-02	k: 809	n:70000
KS ci ratio: 1.797071e-02	ci left: 4.010180e-01	ci right 4.083042e-01	k: 28326	n:70000
C10orf79   70000 perm   28 sec   (2506 perm/sec)   p_kst 4.046571e-01   p_cons 1.155714e-02   p_joint 2.824286e-02

Joint ci ratio: 9.912120e-02	ci left: 1.822371e-02	ci right 2.013639e-02	k: 1533	n:80000
Cons ci ratio: 1.367792e-01	ci left: 9.466981e-03	ci right 1.086888e-02	k: 812	n:80000
KS ci ratio: 1.677596e-02	ci left: 4.022322e-01	ci right 4.090496e-01	k: 32451	n:80000
C10orf79   80000 perm   32 sec   (2529 perm/sec)   p_kst 4.056375e-01   p_cons 1.015000e-02   p_joint 1.916250e-02

Joint ci ratio: 7.889151e-02	ci left: 2.564563e-02	ci right 2.776280e-02	k: 2402	n:90000
Cons ci ratio: 1.227128e-01	ci left: 1.052271e-02	ci right 1.190907e-02	k: 1008	n:90000
KS ci ratio: 1.581598e-02	ci left: 4.024452e-01	ci right 4.088720e-01	k: 36509	n:90000
C10orf79   90000 perm   35 sec   (2540 perm/sec)   p_kst 4.056556e-01   p_cons 1.120000e-02   p_joint 2.668889e-02

Joint ci ratio: 7.853214e-02	ci left: 2.335446e-02	ci right 2.527326e-02	k: 2430	n:100000
Cons ci ratio: 1.165267e-01	ci left: 1.053754e-02	ci right 1.185104e-02	k: 1118	n:100000
KS ci ratio: 1.499398e-02	ci left: 4.029441e-01	ci right 4.090414e-01	k: 40599	n:100000
C10orf79   100000 perm   39 sec   (2542 perm/sec)   p_kst 4.059900e-01   p_cons 1.118000e-02   p_joint 2.430000e-02

Joint ci ratio: 6.944040e-02	ci left: 2.717600e-02	ci right 2.913989e-02	k: 3096	n:110000
Cons ci ratio: 1.110993e-01	ci left: 1.056879e-02	ci right 1.182081e-02	k: 1230	n:110000
KS ci ratio: 1.427816e-02	ci left: 4.036952e-01	ci right 4.095097e-01	k: 44726	n:110000
C10orf79   110000 perm   43 sec   (2538 perm/sec)   p_kst 4.066000e-01   p_cons 1.118182e-02   p_joint 2.814545e-02

Joint ci ratio: 6.751457e-02	ci left: 2.640167e-02	ci right 2.825460e-02	k: 3278	n:120000
Cons ci ratio: 1.066070e-01	ci left: 1.054734e-02	ci right 1.174313e-02	k: 1336	n:120000
KS ci ratio: 1.366820e-02	ci left: 4.038939e-01	ci right 4.094606e-01	k: 48801	n:120000
C10orf79   120000 perm   47 sec   (2531 perm/sec)   p_kst 4.066750e-01   p_cons 1.113333e-02   p_joint 2.731667e-02

Joint ci ratio: 6.722037e-02	ci left: 2.463470e-02	ci right 2.635578e-02	k: 3313	n:130000
Cons ci ratio: 1.017665e-01	ci left: 1.071000e-02	ci right 1.186580e-02	k: 1466	n:130000
KS ci ratio: 1.312713e-02	ci left: 4.041817e-01	ci right 4.095301e-01	k: 52891	n:130000
C10orf79   130000 perm   52 sec   (2520 perm/sec)   p_kst 4.068538e-01   p_cons 1.127692e-02   p_joint 2.548462e-02

Joint ci ratio: 6.238494e-02	ci left: 2.657221e-02	ci right 2.829029e-02	k: 3839	n:140000
Cons ci ratio: 9.787211e-02	ci left: 1.077380e-02	ci right 1.188943e-02	k: 1585	n:140000
KS ci ratio: 1.263196e-02	ci left: 4.049530e-01	ci right 4.101080e-01	k: 57054	n:140000
C10orf79   140000 perm   56 sec   (2505 perm/sec)   p_kst 4.075286e-01   p_cons 1.132143e-02   p_joint 2.742143e-02

Outputting figure to mutsig2_images.part000000000018/C10orf79.12_5150_140000_0.40753_0.011321_0.027421.png
                gene_name: C10orf79
               theta_stop: 0.098 
                    nperm: 140000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.028 

Current progress: 2 percent done.
C10orf90
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.011378e-02	ci left: 7.835050e-01	ci right 7.995249e-01	k: 7916	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
C10orf90   10000 perm   2 sec   (4451 perm/sec)   p_kst 1   p_cons 7.916000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C10orf90.12_2136_10000_1_0.7916_1.png
                gene_name: C10orf90
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
C11orf41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.134314e-02	ci left: 9.173946e-01	ci right 9.279576e-01	k: 9228	n:10000
KS ci ratio: 2.041810e-02	ci left: 7.784370e-01	ci right 7.945958e-01	k: 7866	n:10000
C11orf41   10000 perm   3 sec   (3491 perm/sec)   p_kst 7.866000e-01   p_cons 9.228000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C11orf41.10_5648_10000_0.7866_0.9228_1.png
                gene_name: C11orf41
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
BZRAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.027581e-02	ci left: 2.288905e-01	ci right 2.456629e-01	k: 2372	n:10000
Cons ci ratio: 4.439572e-02	ci left: 4.282451e-01	ci right 4.477911e-01	k: 4380	n:10000
KS ci ratio: 9.639384e-02	ci left: 1.350178e-01	ci right 1.487915e-01	k: 1418	n:10000
BZRAP1   10000 perm   3 sec   (3822 perm/sec)   p_kst 1.418000e-01   p_cons 4.380000e-01   p_joint 2.372000e-01

Outputting figure to mutsig2_images.part000000000018/BZRAP1.9_5698_10000_0.1418_0.438_0.2372.png
                gene_name: BZRAP1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 9 percent done.
C11orf30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.298773e-02	ci left: 7.354271e-01	ci right 7.526306e-01	k: 7441	n:10000
Cons ci ratio: 2.322310e-02	ci left: 7.314859e-01	ci right 7.487740e-01	k: 7402	n:10000
KS ci ratio: 3.062084e-02	ci left: 6.114073e-01	ci right 6.305221e-01	k: 6210	n:10000
C11orf30   10000 perm   2 sec   (4287 perm/sec)   p_kst 6.210000e-01   p_cons 7.402000e-01   p_joint 7.441000e-01

Outputting figure to mutsig2_images.part000000000018/C11orf30.9_4049_10000_0.621_0.7402_0.7441.png
                gene_name: C11orf30
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 11 percent done.
C10orf18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.032798e-02	ci left: 3.679857e-01	ci right 3.870857e-01	k: 3775	n:10000
Cons ci ratio: 9.691176e-02	ci left: 1.337444e-01	ci right 1.474657e-01	k: 1405	n:10000
KS ci ratio: 1.701452e-02	ci left: 8.341928e-01	ci right 8.486078e-01	k: 8415	n:10000
C10orf18   10000 perm   3 sec   (3297 perm/sec)   p_kst 8.415000e-01   p_cons 1.405000e-01   p_joint 3.775000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf18.8_7365_10000_0.8415_0.1405_0.3775.png
                gene_name: C10orf18
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 13 percent done.
C10orf12
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.701279e-02	ci left: 6.687414e-01	ci right 6.871549e-01	k: 6780	n:10000
Cons ci ratio: 4.352291e-02	ci left: 4.380201e-01	ci right 4.576103e-01	k: 4478	n:10000
KS ci ratio: 3.825701e-02	ci left: 5.022507e-01	ci right 5.219422e-01	k: 5121	n:10000
C10orf12   10000 perm   2 sec   (4643 perm/sec)   p_kst 5.121000e-01   p_cons 4.478000e-01   p_joint 6.780000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf12.6_3748_10000_0.5121_0.4478_0.678.png
                gene_name: C10orf12
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 15 percent done.
C10orf137
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.060783e-02	ci left: 6.116083e-01	ci right 6.307211e-01	k: 6212	n:10000
Cons ci ratio: 9.599203e-03	ci left: 9.387940e-01	ci right 9.479456e-01	k: 9435	n:10000
KS ci ratio: 3.743866e-02	ci left: 5.130550e-01	ci right 5.327317e-01	k: 5229	n:10000
C10orf137   10000 perm   2 sec   (4281 perm/sec)   p_kst 5.229000e-01   p_cons 9.435000e-01   p_joint 6.212000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf137.7_3711_10000_0.5229_0.9435_0.6212.png
                gene_name: C10orf137
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 17 percent done.
BUB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.830206e-02	ci left: 3.873915e-01	ci right 4.066685e-01	k: 3970	n:10000
Cons ci ratio: 1.358404e-03	ci left: 9.980327e-01	ci right 9.994508e-01	k: 9989	n:10000
KS ci ratio: 8.000136e-02	ci left: 1.857974e-01	ci right 2.013815e-01	k: 1935	n:10000
BUB1   10000 perm   2 sec   (5031 perm/sec)   p_kst 1.935000e-01   p_cons 9.989000e-01   p_joint 3.970000e-01

Outputting figure to mutsig2_images.part000000000018/BUB1.6_3358_10000_0.1935_0.9989_0.397.png
                gene_name: BUB1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 20 percent done.
BUB1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.842833e-02	ci left: 6.458907e-01	ci right 6.646188e-01	k: 6553	n:10000
Cons ci ratio: 4.616116e-02	ci left: 4.092047e-01	ci right 4.286425e-01	k: 4189	n:10000
KS ci ratio: 2.298170e-02	ci left: 7.355281e-01	ci right 7.527294e-01	k: 7442	n:10000
BUB1B   10000 perm   2 sec   (5099 perm/sec)   p_kst 7.442000e-01   p_cons 4.189000e-01   p_joint 6.553000e-01

Outputting figure to mutsig2_images.part000000000018/BUB1B.6_3245_10000_0.7442_0.4189_0.6553.png
                gene_name: BUB1B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 22 percent done.
C10orf72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.857181e-02	ci left: 2.377814e-01	ci right 2.547666e-01	k: 2462	n:10000
Cons ci ratio: 6.419492e-02	ci left: 2.628009e-01	ci right 2.803323e-01	k: 2715	n:10000
KS ci ratio: 6.717872e-02	ci left: 2.453921e-01	ci right 2.625515e-01	k: 2539	n:10000
C10orf72   10000 perm   2 sec   (5981 perm/sec)   p_kst 2.539000e-01   p_cons 2.715000e-01   p_joint 2.462000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf72.6_1118_10000_0.2539_0.2715_0.2462.png
                gene_name: C10orf72
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 24 percent done.
BTRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.059483e-02	ci left: 6.118092e-01	ci right 6.309201e-01	k: 6214	n:10000
Cons ci ratio: 3.199653e-02	ci left: 5.904206e-01	ci right 6.097211e-01	k: 6001	n:10000
KS ci ratio: 4.484940e-02	ci left: 4.232593e-01	ci right 4.427798e-01	k: 4330	n:10000
BTRC   10000 perm   2 sec   (5529 perm/sec)   p_kst 4.330000e-01   p_cons 6.001000e-01   p_joint 6.214000e-01

Outputting figure to mutsig2_images.part000000000018/BTRC.5_1874_10000_0.433_0.6001_0.6214.png
                gene_name: BTRC
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 26 percent done.
C10orf71
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.176713e-02	ci left: 9.118323e-01	ci right 9.227232e-01	k: 9174	n:10000
KS ci ratio: 5.986213e-03	ci left: 9.741879e-01	ci right 9.801296e-01	k: 9773	n:10000
C10orf71   10000 perm   2 sec   (4488 perm/sec)   p_kst 9.773000e-01   p_cons 9.174000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C10orf71.4_4402_10000_0.9773_0.9174_1.png
                gene_name: C10orf71
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
C10orf84
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.229731e-02	ci left: 5.859043e-01	ci right 6.052400e-01	k: 5956	n:10000
Cons ci ratio: 7.106126e-02	ci left: 2.249406e-01	ci right 2.416151e-01	k: 2332	n:10000
KS ci ratio: 2.958260e-02	ci left: 6.275869e-01	ci right 6.465332e-01	k: 6371	n:10000
C10orf84   10000 perm   2 sec   (5194 perm/sec)   p_kst 6.371000e-01   p_cons 2.332000e-01   p_joint 5.956000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf84.5_730_10000_0.6371_0.2332_0.5956.png
                gene_name: C10orf84
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 30 percent done.
BTN1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.460214e-02	ci left: 7.084626e-01	ci right 7.262107e-01	k: 7174	n:10000
Cons ci ratio: 5.952407e-02	ci left: 2.934065e-01	ci right 3.115087e-01	k: 3024	n:10000
KS ci ratio: 2.141821e-02	ci left: 7.617251e-01	ci right 7.783173e-01	k: 7701	n:10000
BTN1A1   10000 perm   2 sec   (4549 perm/sec)   p_kst 7.701000e-01   p_cons 3.024000e-01   p_joint 7.174000e-01

Outputting figure to mutsig2_images.part000000000018/BTN1A1.4_1609_10000_0.7701_0.3024_0.7174.png
                gene_name: BTN1A1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 33 percent done.
BTN2A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.897850e-02	ci left: 2.972729e-01	ci right 3.154400e-01	k: 3063	n:10000
Cons ci ratio: 1.445118e-02	ci left: 8.738790e-01	ci right 8.866985e-01	k: 8804	n:10000
KS ci ratio: 1.381586e-01	ci left: 6.933115e-02	ci right 7.971834e-02	k: 744	n:10000
BTN2A2   10000 perm   2 sec   (5513 perm/sec)   p_kst 7.440000e-02   p_cons 8.804000e-01   p_joint 3.063000e-01

Joint ci ratio: 6.166182e-02	ci left: 1.628915e-01	ci right 1.733052e-01	k: 3361	n:20000
Cons ci ratio: 1.023442e-02	ci left: 8.754668e-01	ci right 8.845224e-01	k: 17601	n:20000
KS ci ratio: 9.787248e-02	ci left: 7.060469e-02	ci right 7.791966e-02	k: 1484	n:20000
BTN2A2   20000 perm   4 sec   (4678 perm/sec)   p_kst 7.420000e-02   p_cons 8.800500e-01   p_joint 1.680500e-01

Outputting figure to mutsig2_images.part000000000018/BTN2A2.4_1600_20000_0.0742_0.88005_0.16805.png
                gene_name: BTN2A2
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 35 percent done.
BTN3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.810527e-02	ci left: 1.932819e-01	ci right 2.090925e-01	k: 2011	n:10000
Cons ci ratio: 1.797419e-01	ci left: 4.130699e-02	ci right 4.956044e-02	k: 453	n:10000
KS ci ratio: 3.483445e-02	ci left: 5.489020e-01	ci right 5.684638e-01	k: 5587	n:10000
BTN3A1   10000 perm   2 sec   (4097 perm/sec)   p_kst 5.587000e-01   p_cons 4.530000e-02   p_joint 2.011000e-01

Joint ci ratio: 9.255771e-02	ci left: 7.847822e-02	ci right 8.614373e-02	k: 1645	n:20000
Cons ci ratio: 1.250922e-01	ci left: 4.386539e-02	ci right 4.976727e-02	k: 935	n:20000
KS ci ratio: 2.477088e-02	ci left: 5.490313e-01	ci right 5.628524e-01	k: 11119	n:20000
BTN3A1   20000 perm   5 sec   (3675 perm/sec)   p_kst 5.559500e-01   p_cons 4.675000e-02   p_joint 8.225000e-02

Joint ci ratio: 7.128489e-02	ci left: 8.829322e-02	ci right 9.485279e-02	k: 2746	n:30000
Cons ci ratio: 1.017585e-01	ci left: 4.472999e-02	ci right 4.955819e-02	k: 1413	n:30000
KS ci ratio: 2.041144e-02	ci left: 5.457840e-01	ci right 5.570727e-01	k: 16543	n:30000
BTN3A1   30000 perm   8 sec   (3814 perm/sec)   p_kst 5.514333e-01   p_cons 4.710000e-02   p_joint 9.153333e-02

Joint ci ratio: 5.910362e-02	ci left: 9.613919e-02	ci right 1.020192e-01	k: 3962	n:40000
Cons ci ratio: 8.507585e-02	ci left: 4.825181e-02	ci right 5.256376e-02	k: 2015	n:40000
KS ci ratio: 1.773277e-02	ci left: 5.449836e-01	ci right 5.547592e-01	k: 21995	n:40000
BTN3A1   40000 perm   10 sec   (3872 perm/sec)   p_kst 5.498750e-01   p_cons 5.037500e-02   p_joint 9.905000e-02

Outputting figure to mutsig2_images.part000000000018/BTN3A1.4_1746_40000_0.54988_0.050375_0.09905.png
                gene_name: BTN3A1
               theta_stop: 0.085 
                    nperm: 40000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 37 percent done.
BTN3A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.758361e-02	ci left: 6.594774e-01	ci right 6.780242e-01	k: 6688	n:10000
Cons ci ratio: 5.442180e-02	ci left: 3.322029e-01	ci right 3.508895e-01	k: 3415	n:10000
KS ci ratio: 2.326536e-02	ci left: 7.307786e-01	ci right 7.480817e-01	k: 7395	n:10000
BTN3A3   10000 perm   2 sec   (5432 perm/sec)   p_kst 7.395000e-01   p_cons 3.415000e-01   p_joint 6.688000e-01

Outputting figure to mutsig2_images.part000000000018/BTN3A3.4_1791_10000_0.7395_0.3415_0.6688.png
                gene_name: BTN3A3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 39 percent done.
BUD13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.316556e-02	ci left: 1.433484e-01	ci right 1.574560e-01	k: 1503	n:10000
Cons ci ratio: 1.997964e-02	ci left: 7.857354e-01	ci right 8.016931e-01	k: 7938	n:10000
KS ci ratio: 1.478182e-01	ci left: 6.082454e-02	ci right 7.063030e-02	k: 656	n:10000
BUD13   10000 perm   2 sec   (5434 perm/sec)   p_kst 6.560000e-02   p_cons 7.938000e-01   p_joint 1.503000e-01

Joint ci ratio: 6.504133e-02	ci left: 1.486779e-01	ci right 1.587230e-01	k: 3073	n:20000
Cons ci ratio: 1.356226e-02	ci left: 8.013094e-01	ci right 8.123012e-01	k: 16137	n:20000
KS ci ratio: 1.032282e-01	ci left: 6.376824e-02	ci right 7.075821e-02	k: 1344	n:20000
BUD13   20000 perm   4 sec   (4799 perm/sec)   p_kst 6.720000e-02   p_cons 8.068500e-01   p_joint 1.536500e-01

Joint ci ratio: 6.170688e-02	ci left: 1.148960e-01	ci right 1.222447e-01	k: 3556	n:30000
Cons ci ratio: 1.118523e-02	ci left: 7.991594e-01	ci right 8.081817e-01	k: 24111	n:30000
KS ci ratio: 8.534532e-02	ci left: 6.288924e-02	ci right 6.852856e-02	k: 1970	n:30000
BUD13   30000 perm   7 sec   (4568 perm/sec)   p_kst 6.566667e-02   p_cons 8.037000e-01   p_joint 1.185333e-01

Outputting figure to mutsig2_images.part000000000018/BUD13.4_1900_30000_0.065667_0.8037_0.11853.png
                gene_name: BUD13
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 41 percent done.
BVES
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.592830e-02	ci left: 5.335757e-01	ci right 5.531990e-01	k: 5434	n:10000
Cons ci ratio: 2.782048e-02	ci left: 6.556521e-01	ci right 6.742517e-01	k: 6650	n:10000
KS ci ratio: 5.928515e-02	ci left: 2.950918e-01	ci right 3.132224e-01	k: 3041	n:10000
BVES   10000 perm   2 sec   (5920 perm/sec)   p_kst 3.041000e-01   p_cons 6.650000e-01   p_joint 5.434000e-01

Outputting figure to mutsig2_images.part000000000018/BVES.4_1111_10000_0.3041_0.665_0.5434.png
                gene_name: BVES
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 43 percent done.
C10orf11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.075757e-02	ci left: 6.092978e-01	ci right 6.284329e-01	k: 6189	n:10000
KS ci ratio: 1.006689e-02	ci left: 9.333016e-01	ci right 9.428413e-01	k: 9382	n:10000
C10orf11   10000 perm   2 sec   (6216 perm/sec)   p_kst 9.382000e-01   p_cons 6.189000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C10orf11.4_621_10000_0.9382_0.6189_1.png
                gene_name: C10orf11
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
C10orf118
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.978118e-02	ci left: 6.244707e-01	ci right 6.434512e-01	k: 6340	n:10000
Cons ci ratio: 1.268250e-02	ci left: 8.993926e-01	ci right 9.109701e-01	k: 9053	n:10000
KS ci ratio: 4.952396e-02	ci left: 3.755471e-01	ci right 3.947199e-01	k: 3851	n:10000
C10orf118   10000 perm   2 sec   (5568 perm/sec)   p_kst 3.851000e-01   p_cons 9.053000e-01   p_joint 6.340000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf118.4_2757_10000_0.3851_0.9053_0.634.png
                gene_name: C10orf118
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 48 percent done.
C10orf120
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.175938e-02	ci left: 9.119352e-01	ci right 9.228202e-01	k: 9175	n:10000
Cons ci ratio: 4.489509e-02	ci left: 4.227607e-01	ci right 4.422786e-01	k: 4325	n:10000
KS ci ratio: 2.658696e-02	ci left: 6.756920e-01	ci right 6.940002e-01	k: 6849	n:10000
C10orf120   10000 perm   2 sec   (5711 perm/sec)   p_kst 6.849000e-01   p_cons 4.325000e-01   p_joint 9.175000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf120.4_1020_10000_0.6849_0.4325_0.9175.png
                gene_name: C10orf120
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 50 percent done.
C10orf140
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.552890e-01	ci left: 5.523135e-02	ci right 6.462705e-02	k: 598	n:10000
Cons ci ratio: 3.341548e-02	ci left: 5.693517e-01	ci right 5.888022e-01	k: 5791	n:10000
KS ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
C10orf140   10000 perm   2 sec   (4787 perm/sec)   p_kst 9.400000e-03   p_cons 5.791000e-01   p_joint 5.980000e-02

Joint ci ratio: 1.730984e-01	ci left: 2.283264e-02	ci right 2.720694e-02	k: 499	n:20000
Cons ci ratio: 2.280574e-02	ci left: 5.894616e-01	ci right 6.031104e-01	k: 11926	n:20000
KS ci ratio: 2.884389e-01	ci left: 7.830711e-03	ci right 1.051490e-02	k: 182	n:20000
C10orf140   20000 perm   4 sec   (4446 perm/sec)   p_kst 9.100000e-03   p_cons 5.963000e-01   p_joint 2.495000e-02

Joint ci ratio: 1.191303e-01	ci left: 3.275459e-02	ci right 3.693612e-02	k: 1044	n:30000
Cons ci ratio: 1.859667e-02	ci left: 5.913569e-01	ci right 6.024910e-01	k: 17908	n:30000
KS ci ratio: 2.302770e-01	ci left: 8.464779e-03	ci right 1.069841e-02	k: 286	n:30000
C10orf140   30000 perm   7 sec   (4284 perm/sec)   p_kst 9.533333e-03   p_cons 5.969333e-01   p_joint 3.480000e-02

Joint ci ratio: 9.283122e-02	ci left: 4.069055e-02	ci right 4.467619e-02	k: 1706	n:40000
Cons ci ratio: 1.610477e-02	ci left: 5.921237e-01	ci right 6.017622e-01	k: 23878	n:40000
KS ci ratio: 1.925979e-01	ci left: 9.262315e-03	ci right 1.125974e-02	k: 409	n:40000
C10orf140   40000 perm   10 sec   (4105 perm/sec)   p_kst 1.022500e-02   p_cons 5.969500e-01   p_joint 4.265000e-02

Joint ci ratio: 7.996246e-02	ci left: 4.402327e-02	ci right 4.770969e-02	k: 2292	n:50000
Cons ci ratio: 1.442769e-02	ci left: 5.918638e-01	ci right 6.004851e-01	k: 29809	n:50000
KS ci ratio: 1.725205e-01	ci left: 9.337809e-03	ci right 1.111974e-02	k: 510	n:50000
C10orf140   50000 perm   13 sec   (3990 perm/sec)   p_kst 1.020000e-02   p_cons 5.961800e-01   p_joint 4.584000e-02

Joint ci ratio: 8.647106e-02	ci left: 3.168283e-02	ci right 3.456256e-02	k: 1986	n:60000
Cons ci ratio: 1.315371e-02	ci left: 5.928620e-01	ci right 6.007286e-01	k: 35808	n:60000
KS ci ratio: 1.573855e-01	ci left: 9.427460e-03	ci right 1.105377e-02	k: 613	n:60000
C10orf140   60000 perm   15 sec   (3912 perm/sec)   p_kst 1.021667e-02   p_cons 5.968000e-01   p_joint 3.310000e-02

Joint ci ratio: 8.699840e-02	ci left: 2.695813e-02	ci right 2.942404e-02	k: 1972	n:70000
Cons ci ratio: 1.219247e-02	ci left: 5.925828e-01	ci right 5.998664e-01	k: 41736	n:70000
KS ci ratio: 1.471003e-01	ci left: 9.303668e-03	ci right 1.079451e-02	k: 702	n:70000
C10orf140   70000 perm   18 sec   (3836 perm/sec)   p_kst 1.002857e-02   p_cons 5.962286e-01   p_joint 2.817143e-02

Joint ci ratio: 9.360873e-02	ci left: 2.044498e-02	ci right 2.246493e-02	k: 1715	n:80000
Cons ci ratio: 1.140334e-02	ci left: 5.928904e-01	ci right 5.997026e-01	k: 47704	n:80000
KS ci ratio: 1.383347e-01	ci left: 9.249653e-03	ci right 1.063623e-02	k: 794	n:80000
C10orf140   80000 perm   21 sec   (3767 perm/sec)   p_kst 9.925000e-03   p_cons 5.963000e-01   p_joint 2.143750e-02

Joint ci ratio: 7.771972e-02	ci left: 2.641948e-02	ci right 2.856667e-02	k: 2473	n:90000
Cons ci ratio: 1.073829e-02	ci left: 5.936644e-01	ci right 6.000849e-01	k: 53719	n:90000
KS ci ratio: 1.317218e-01	ci left: 9.102211e-03	ci right 1.039635e-02	k: 876	n:90000
C10orf140   90000 perm   24 sec   (3701 perm/sec)   p_kst 9.733333e-03   p_cons 5.968778e-01   p_joint 2.747778e-02

Joint ci ratio: 7.561775e-02	ci left: 2.517950e-02	ci right 2.716811e-02	k: 2616	n:100000
Cons ci ratio: 1.018318e-02	ci left: 5.940222e-01	ci right 6.001122e-01	k: 59707	n:100000
KS ci ratio: 1.253817e-01	ci left: 9.072726e-03	ci right 1.029597e-02	k: 967	n:100000
C10orf140   100000 perm   28 sec   (3630 perm/sec)   p_kst 9.670000e-03   p_cons 5.970700e-01   p_joint 2.616000e-02

Joint ci ratio: 7.512404e-02	ci left: 2.324636e-02	ci right 2.506976e-02	k: 2656	n:110000
Cons ci ratio: 9.714374e-03	ci left: 5.939123e-01	ci right 5.997190e-01	k: 65650	n:110000
KS ci ratio: 1.189169e-01	ci left: 9.199799e-03	ci right 1.037172e-02	k: 1075	n:110000
C10orf140   110000 perm   31 sec   (3565 perm/sec)   p_kst 9.772727e-03   p_cons 5.968182e-01   p_joint 2.414545e-02

Joint ci ratio: 6.093076e-02	ci left: 3.232483e-02	ci right 3.436447e-02	k: 4000	n:120000
Cons ci ratio: 9.576686e-03	ci left: 5.798788e-01	ci right 5.854672e-01	k: 69921	n:120000
KS ci ratio: 1.134556e-01	ci left: 9.290843e-03	ci right 1.041637e-02	k: 1181	n:120000
C10orf140   120000 perm   34 sec   (3501 perm/sec)   p_kst 9.841667e-03   p_cons 5.826750e-01   p_joint 3.333333e-02

Joint ci ratio: 5.964113e-02	ci left: 3.120150e-02	ci right 3.312714e-02	k: 4180	n:130000
Cons ci ratio: 9.203136e-03	ci left: 5.798752e-01	ci right 5.852442e-01	k: 75733	n:130000
KS ci ratio: 1.091123e-01	ci left: 9.294073e-03	ci right 1.037411e-02	k: 1277	n:130000
C10orf140   130000 perm   38 sec   (3451 perm/sec)   p_kst 9.823077e-03   p_cons 5.825615e-01   p_joint 3.215385e-02

Joint ci ratio: 6.015077e-02	ci left: 2.855651e-02	ci right 3.033448e-02	k: 4121	n:140000
Cons ci ratio: 8.871706e-03	ci left: 5.797900e-01	ci right 5.849637e-01	k: 81533	n:140000
KS ci ratio: 1.053486e-01	ci left: 9.276677e-03	ci right 1.031521e-02	k: 1370	n:140000
C10orf140   140000 perm   41 sec   (3401 perm/sec)   p_kst 9.785714e-03   p_cons 5.823786e-01   p_joint 2.943571e-02

Joint ci ratio: 6.007683e-02	ci left: 2.677019e-02	ci right 2.843480e-02	k: 4139	n:150000
Cons ci ratio: 8.567573e-03	ci left: 5.800662e-01	ci right 5.850639e-01	k: 87385	n:150000
KS ci ratio: 1.020903e-01	ci left: 9.236164e-03	ci right 1.023626e-02	k: 1459	n:150000
C10orf140   150000 perm   45 sec   (3350 perm/sec)   p_kst 9.726667e-03   p_cons 5.825667e-01   p_joint 2.759333e-02

Joint ci ratio: 5.510667e-02	ci left: 2.981080e-02	ci right 3.150626e-02	k: 4904	n:160000
Cons ci ratio: 8.297191e-03	ci left: 5.800477e-01	ci right 5.848868e-01	k: 93195	n:160000
KS ci ratio: 9.898765e-02	ci left: 9.225536e-03	ci right 1.019235e-02	k: 1552	n:160000
C10orf140   160000 perm   48 sec   (3299 perm/sec)   p_kst 9.700000e-03   p_cons 5.824687e-01   p_joint 3.065000e-02

Outputting figure to mutsig2_images.part000000000018/C10orf140.4_2731_160000_0.0097_0.58247_0.03065.png
                gene_name: C10orf140
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.0097 
        ci_ks_bounds_left: 0.0092 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 52 percent done.
C10orf76
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.151183e-02	ci left: 4.614759e-01	ci right 4.811408e-01	k: 4713	n:10000
Cons ci ratio: 5.831909e-02	ci left: 3.020326e-01	ci right 3.202776e-01	k: 3111	n:10000
KS ci ratio: 4.103189e-02	ci left: 4.672683e-01	ci right 4.869450e-01	k: 4771	n:10000
C10orf76   10000 perm   2 sec   (5734 perm/sec)   p_kst 4.771000e-01   p_cons 3.111000e-01   p_joint 4.713000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf76.4_2170_10000_0.4771_0.3111_0.4713.png
                gene_name: C10orf76
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 54 percent done.
C10orf96
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.499718e-02	ci left: 5.465975e-01	ci right 5.661697e-01	k: 5564	n:10000
Cons ci ratio: 2.110358e-02	ci left: 7.669899e-01	ci right 7.834495e-01	k: 7753	n:10000
KS ci ratio: 6.556918e-02	ci left: 2.545889e-01	ci right 2.719492e-01	k: 2632	n:10000
C10orf96   10000 perm   2 sec   (6096 perm/sec)   p_kst 2.632000e-01   p_cons 7.753000e-01   p_joint 5.564000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf96.4_809_10000_0.2632_0.7753_0.5564.png
                gene_name: C10orf96
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 57 percent done.
C11orf57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.045098e-02	ci left: 2.280016e-01	ci right 2.447522e-01	k: 2363	n:10000
Cons ci ratio: 1.066559e-01	ci left: 1.126178e-01	ci right 1.254051e-01	k: 1189	n:10000
KS ci ratio: 2.336799e-02	ci left: 7.290610e-01	ci right 7.464003e-01	k: 7378	n:10000
C11orf57   10000 perm   2 sec   (6029 perm/sec)   p_kst 7.378000e-01   p_cons 1.189000e-01   p_joint 2.363000e-01

Joint ci ratio: 3.051795e-02	ci left: 4.450849e-01	ci right 4.589291e-01	k: 9040	n:20000
Cons ci ratio: 7.596290e-02	ci left: 1.130188e-01	ci right 1.219927e-01	k: 2349	n:20000
KS ci ratio: 1.658581e-02	ci left: 7.301845e-01	ci right 7.424468e-01	k: 14727	n:20000
C11orf57   20000 perm   4 sec   (5272 perm/sec)   p_kst 7.363500e-01   p_cons 1.174500e-01   p_joint 4.520000e-01

Outputting figure to mutsig2_images.part000000000018/C11orf57.4_902_20000_0.73635_0.11745_0.452.png
                gene_name: C11orf57
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 59 percent done.
BTN3A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.673957e-02	ci left: 8.385712e-01	ci right 8.528268e-01	k: 8458	n:10000
KS ci ratio: 2.781424e-02	ci left: 6.557528e-01	ci right 6.743510e-01	k: 6651	n:10000
BTN3A2   10000 perm   2 sec   (6316 perm/sec)   p_kst 6.651000e-01   p_cons 8.458000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/BTN3A2.3_1033_10000_0.6651_0.8458_1.png
                gene_name: BTN3A2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
BTNL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.060498e-01	ci left: 1.137899e-01	ci right 1.266323e-01	k: 1201	n:10000
Cons ci ratio: 1.206707e-02	ci left: 9.078193e-01	ci right 9.189385e-01	k: 9135	n:10000
KS ci ratio: 2.209987e-01	ci left: 2.712237e-02	ci right 3.395474e-02	k: 304	n:10000
BTNL2   10000 perm   2 sec   (6134 perm/sec)   p_kst 3.040000e-02   p_cons 9.135000e-01   p_joint 1.201000e-01

Joint ci ratio: 8.645901e-02	ci left: 8.915632e-02	ci right 9.726239e-02	k: 1863	n:20000
Cons ci ratio: 8.452647e-03	ci left: 9.109983e-01	ci right 9.187805e-01	k: 18299	n:20000
KS ci ratio: 1.593999e-01	ci left: 2.700636e-02	ci right 3.173179e-02	k: 586	n:20000
BTNL2   20000 perm   4 sec   (5346 perm/sec)   p_kst 2.930000e-02   p_cons 9.149500e-01   p_joint 9.315000e-02

Joint ci ratio: 6.800892e-02	ci left: 9.629916e-02	ci right 1.031119e-01	k: 2990	n:30000
Cons ci ratio: 7.074780e-03	ci left: 9.077213e-01	ci right 9.141989e-01	k: 27330	n:30000
KS ci ratio: 1.246762e-01	ci left: 2.990786e-02	ci right 3.391679e-02	k: 956	n:30000
BTNL2   30000 perm   6 sec   (5114 perm/sec)   p_kst 3.186667e-02   p_cons 9.110000e-01   p_joint 9.966667e-02

Joint ci ratio: 5.835468e-02	ci left: 9.840901e-02	ci right 1.043490e-01	k: 4054	n:40000
Cons ci ratio: 6.118254e-03	ci left: 9.083953e-01	ci right 9.139948e-01	k: 36449	n:40000
KS ci ratio: 1.084570e-01	ci left: 2.990726e-02	ci right 3.336117e-02	k: 1264	n:40000
BTNL2   40000 perm   8 sec   (4946 perm/sec)   p_kst 3.160000e-02   p_cons 9.112250e-01   p_joint 1.013500e-01

Joint ci ratio: 5.893825e-02	ci left: 7.887940e-02	ci right 8.368934e-02	k: 4063	n:50000
Cons ci ratio: 5.477137e-03	ci left: 9.085512e-01	ci right 9.135609e-01	k: 45554	n:50000
KS ci ratio: 1.003403e-01	ci left: 2.813182e-02	ci right 3.112312e-02	k: 1480	n:50000
BTNL2   50000 perm   10 sec   (4792 perm/sec)   p_kst 2.960000e-02   p_cons 9.110800e-01   p_joint 8.126000e-02

Joint ci ratio: 5.255665e-02	ci left: 8.261563e-02	ci right 8.709129e-02	k: 5090	n:60000
Cons ci ratio: 5.005411e-03	ci left: 9.085922e-01	ci right 9.131680e-01	k: 54654	n:60000
KS ci ratio: 9.099809e-02	ci left: 2.863318e-02	ci right 3.137920e-02	k: 1799	n:60000
BTNL2   60000 perm   13 sec   (4666 perm/sec)   p_kst 2.998333e-02   p_cons 9.109000e-01   p_joint 8.483333e-02

Outputting figure to mutsig2_images.part000000000018/BTNL2.3_1392_60000_0.029983_0.9109_0.084833.png
                gene_name: BTNL2
               theta_stop: 0.091 
                    nperm: 60000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.087 

Current progress: 63 percent done.
BTNL8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.469819e-01	ci left: 6.150035e-02	ci right 7.135407e-02	k: 663	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
BTNL8   10000 perm   2 sec   (6184 perm/sec)   p_kst 1.000000e-04   p_cons 6.630000e-02   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 1.046107e-01	ci left: 6.215831e-02	ci right 6.906863e-02	k: 1311	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
BTNL8   20000 perm   4 sec   (5486 perm/sec)   p_kst 5.000000e-05   p_cons 6.555000e-02   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 8.585932e-02	ci left: 6.217058e-02	ci right 6.778070e-02	k: 1948	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
BTNL8   30000 perm   6 sec   (5121 perm/sec)   p_kst 3.333333e-05   p_cons 6.493333e-02   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 7.433623e-02	ci left: 6.257867e-02	ci right 6.743472e-02	k: 2599	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
BTNL8   40000 perm   8 sec   (4948 perm/sec)   p_kst 2.500000e-05   p_cons 6.497500e-02   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 6.637933e-02	ci left: 6.303165e-02	ci right 6.737899e-02	k: 3259	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
BTNL8   50000 perm   10 sec   (4830 perm/sec)   p_kst 2.000000e-05   p_cons 6.518000e-02   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 6.072048e-02	ci left: 6.297444e-02	ci right 6.693444e-02	k: 3896	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
BTNL8   60000 perm   13 sec   (4728 perm/sec)   p_kst 1.666667e-05   p_cons 6.493333e-02   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 5.633898e-02	ci left: 6.286040e-02	ci right 6.651864e-02	k: 4527	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
BTNL8   70000 perm   15 sec   (4627 perm/sec)   p_kst 1.428571e-05   p_cons 6.467143e-02   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 5.270500e-02	ci left: 6.296789e-02	ci right 6.638877e-02	k: 5173	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
BTNL8   80000 perm   18 sec   (4530 perm/sec)   p_kst 1.250000e-05   p_cons 6.466250e-02   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 4.950802e-02	ci left: 6.350770e-02	ci right 6.674262e-02	k: 5860	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
BTNL8   90000 perm   20 sec   (4436 perm/sec)   p_kst 1.111111e-05   p_cons 6.511111e-02   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 4.682617e-02	ci left: 6.395443e-02	ci right 6.703084e-02	k: 6548	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
BTNL8   100000 perm   23 sec   (4342 perm/sec)   p_kst 1.000000e-05   p_cons 6.548000e-02   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 4.454422e-02	ci left: 6.430577e-02	ci right 6.724445e-02	k: 7234	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
BTNL8   110000 perm   26 sec   (4240 perm/sec)   p_kst 9.090909e-06   p_cons 6.576364e-02   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 4.264707e-02	ci left: 6.437055e-02	ci right 6.718381e-02	k: 7892	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
BTNL8   120000 perm   29 sec   (4146 perm/sec)   p_kst 8.333333e-06   p_cons 6.576667e-02   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 4.088131e-02	ci left: 6.470191e-02	ci right 6.740980e-02	k: 8586	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
BTNL8   130000 perm   32 sec   (4067 perm/sec)   p_kst 7.692308e-06   p_cons 6.604615e-02   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 3.941371e-02	ci left: 6.469071e-02	ci right 6.729872e-02	k: 9238	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
BTNL8   140000 perm   35 sec   (3990 perm/sec)   p_kst 7.142857e-06   p_cons 6.598571e-02   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 3.811630e-02	ci left: 6.460985e-02	ci right 6.712696e-02	k: 9879	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
BTNL8   150000 perm   38 sec   (3921 perm/sec)   p_kst 6.666667e-06   p_cons 6.586000e-02   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 3.692597e-02	ci left: 6.458371e-02	ci right 6.701955e-02	k: 10527	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
BTNL8   160000 perm   42 sec   (3849 perm/sec)   p_kst 6.250000e-06   p_cons 6.579375e-02   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 3.575166e-02	ci left: 6.486506e-02	ci right 6.723211e-02	k: 11227	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
BTNL8   170000 perm   45 sec   (3782 perm/sec)   p_kst 5.882353e-06   p_cons 6.604118e-02   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 3.474668e-02	ci left: 6.489030e-02	ci right 6.719037e-02	k: 11886	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
BTNL8   180000 perm   48 sec   (3717 perm/sec)   p_kst 5.555556e-06   p_cons 6.603333e-02   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 3.379887e-02	ci left: 6.499726e-02	ci right 6.723705e-02	k: 12561	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
BTNL8   190000 perm   52 sec   (3654 perm/sec)   p_kst 5.263158e-06   p_cons 6.611053e-02   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 3.294328e-02	ci left: 6.502483e-02	ci right 6.720777e-02	k: 13222	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
BTNL8   200000 perm   56 sec   (3595 perm/sec)   p_kst 5.000000e-06   p_cons 6.611000e-02   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 3.214334e-02	ci left: 6.507405e-02	ci right 6.720461e-02	k: 13888	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
BTNL8   210000 perm   59 sec   (3537 perm/sec)   p_kst 4.761905e-06   p_cons 6.613333e-02   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 3.138974e-02	ci left: 6.515548e-02	ci right 6.723779e-02	k: 14562	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
BTNL8   220000 perm   63 sec   (3483 perm/sec)   p_kst 4.545455e-06   p_cons 6.619091e-02   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 3.071918e-02	ci left: 6.510085e-02	ci right 6.713618e-02	k: 15206	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
BTNL8   230000 perm   67 sec   (3429 perm/sec)   p_kst 4.347826e-06   p_cons 6.611304e-02   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 3.005634e-02	ci left: 6.518776e-02	ci right 6.718107e-02	k: 15883	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
BTNL8   240000 perm   71 sec   (3376 perm/sec)   p_kst 4.166667e-06   p_cons 6.617917e-02   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 2.938621e-02	ci left: 6.547075e-02	ci right 6.742732e-02	k: 16611	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
BTNL8   250000 perm   75 sec   (3323 perm/sec)   p_kst 4.000000e-06   p_cons 6.644400e-02   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 2.884550e-02	ci left: 6.536184e-02	ci right 6.727862e-02	k: 17242	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
BTNL8   260000 perm   79 sec   (3274 perm/sec)   p_kst 3.846154e-06   p_cons 6.631538e-02   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 2.833867e-02	ci left: 6.523923e-02	ci right 6.711825e-02	k: 17867	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
BTNL8   270000 perm   84 sec   (3226 perm/sec)   p_kst 3.703704e-06   p_cons 6.617407e-02   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 2.784314e-02	ci left: 6.518952e-02	ci right 6.703375e-02	k: 18510	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
BTNL8   280000 perm   88 sec   (3178 perm/sec)   p_kst 3.571429e-06   p_cons 6.610714e-02   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 2.736736e-02	ci left: 6.516750e-02	ci right 6.697911e-02	k: 19160	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
BTNL8   290000 perm   93 sec   (3133 perm/sec)   p_kst 3.448276e-06   p_cons 6.606897e-02   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 2.688322e-02	ci left: 6.529295e-02	ci right 6.707544e-02	k: 19854	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
BTNL8   300000 perm   97 sec   (3088 perm/sec)   p_kst 3.333333e-06   p_cons 6.618000e-02   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 2.647014e-02	ci left: 6.519577e-02	ci right 6.694784e-02	k: 20481	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
BTNL8   310000 perm   102 sec   (3038 perm/sec)   p_kst 3.225806e-06   p_cons 6.606774e-02   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 2.608346e-02	ci left: 6.506759e-02	ci right 6.679028e-02	k: 21096	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
BTNL8   320000 perm   107 sec   (2988 perm/sec)   p_kst 3.125000e-06   p_cons 6.592500e-02   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 2.565637e-02	ci left: 6.521845e-02	ci right 6.691645e-02	k: 21801	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
BTNL8   330000 perm   112 sec   (2940 perm/sec)   p_kst 3.030303e-06   p_cons 6.606364e-02   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 2.527305e-02	ci left: 6.524662e-02	ci right 6.691961e-02	k: 22467	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
BTNL8   340000 perm   117 sec   (2894 perm/sec)   p_kst 2.941176e-06   p_cons 6.607941e-02   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 2.492198e-02	ci left: 6.519667e-02	ci right 6.684481e-02	k: 23106	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
BTNL8   350000 perm   123 sec   (2850 perm/sec)   p_kst 2.857143e-06   p_cons 6.601714e-02   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 2.459346e-02	ci left: 6.510821e-02	ci right 6.673212e-02	k: 23730	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
BTNL8   360000 perm   128 sec   (2806 perm/sec)   p_kst 2.777778e-06   p_cons 6.591667e-02   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 2.427440e-02	ci left: 6.504080e-02	ci right 6.664169e-02	k: 24360	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
BTNL8   370000 perm   134 sec   (2766 perm/sec)   p_kst 2.702703e-06   p_cons 6.583784e-02   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 2.394488e-02	ci left: 6.509221e-02	ci right 6.667231e-02	k: 25034	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
BTNL8   380000 perm   139 sec   (2733 perm/sec)   p_kst 2.631579e-06   p_cons 6.587895e-02   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 2.363926e-02	ci left: 6.508502e-02	ci right 6.664451e-02	k: 25686	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
BTNL8   390000 perm   146 sec   (2677 perm/sec)   p_kst 2.564103e-06   p_cons 6.586154e-02   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 2.334173e-02	ci left: 6.509572e-02	ci right 6.663557e-02	k: 26345	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
BTNL8   400000 perm   151 sec   (2647 perm/sec)   p_kst 2.500000e-06   p_cons 6.586250e-02   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 2.305973e-02	ci left: 6.508176e-02	ci right 6.660243e-02	k: 26994	n:410000
KS ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
BTNL8   410000 perm   157 sec   (2618 perm/sec)   p_kst 2.439024e-06   p_cons 6.583902e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 2.279212e-02	ci left: 6.504488e-02	ci right 6.654683e-02	k: 27633	n:420000
KS ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
BTNL8   420000 perm   162 sec   (2588 perm/sec)   p_kst 2.380952e-06   p_cons 6.579286e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 2.252978e-02	ci left: 6.503064e-02	ci right 6.651475e-02	k: 28281	n:430000
KS ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
BTNL8   430000 perm   168 sec   (2560 perm/sec)   p_kst 2.325581e-06   p_cons 6.576977e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 2.226271e-02	ci left: 6.509175e-02	ci right 6.655942e-02	k: 28962	n:440000
KS ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
BTNL8   440000 perm   174 sec   (2533 perm/sec)   p_kst 2.272727e-06   p_cons 6.582273e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 2.201485e-02	ci left: 6.509498e-02	ci right 6.654617e-02	k: 29618	n:450000
KS ci ratio: 2.263203e+00	ci left: 5.382433e-07	ci right 1.605477e-05	k: 2	n:450000
BTNL8   450000 perm   179 sec   (2507 perm/sec)   p_kst 4.444444e-06   p_cons 6.581778e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 2.176201e-02	ci left: 6.517169e-02	ci right 6.660770e-02	k: 30308	n:460000
KS ci ratio: 2.263203e+00	ci left: 5.265423e-07	ci right 1.570575e-05	k: 2	n:460000
BTNL8   460000 perm   185 sec   (2482 perm/sec)   p_kst 4.347826e-06   p_cons 6.588696e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 2.152513e-02	ci left: 6.520288e-02	ci right 6.662375e-02	k: 30978	n:470000
KS ci ratio: 2.263203e+00	ci left: 5.153393e-07	ci right 1.537159e-05	k: 2	n:470000
BTNL8   470000 perm   191 sec   (2455 perm/sec)   p_kst 4.255319e-06   p_cons 6.591064e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 2.128645e-02	ci left: 6.528676e-02	ci right 6.669348e-02	k: 31674	n:480000
KS ci ratio: 2.263204e+00	ci left: 5.046031e-07	ci right 1.505135e-05	k: 2	n:480000
BTNL8   480000 perm   198 sec   (2430 perm/sec)   p_kst 4.166667e-06   p_cons 6.598750e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 2.108624e-02	ci left: 6.518858e-02	ci right 6.657982e-02	k: 32282	n:490000
KS ci ratio: 2.263204e+00	ci left: 4.943050e-07	ci right 1.474418e-05	k: 2	n:490000
BTNL8   490000 perm   204 sec   (2406 perm/sec)   p_kst 4.081633e-06   p_cons 6.588163e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 2.088105e-02	ci left: 6.515609e-02	ci right 6.653294e-02	k: 32921	n:500000
KS ci ratio: 2.263204e+00	ci left: 4.844189e-07	ci right 1.444930e-05	k: 2	n:500000
BTNL8   500000 perm   210 sec   (2382 perm/sec)   p_kst 4.000000e-06   p_cons 6.584200e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 2.069097e-02	ci left: 6.507030e-02	ci right 6.643267e-02	k: 33532	n:510000
KS ci ratio: 2.263204e+00	ci left: 4.749205e-07	ci right 1.416598e-05	k: 2	n:510000
BTNL8   510000 perm   216 sec   (2358 perm/sec)   p_kst 3.921569e-06   p_cons 6.574902e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 2.049378e-02	ci left: 6.506060e-02	ci right 6.640963e-02	k: 34181	n:520000
KS ci ratio: 2.263204e+00	ci left: 4.657874e-07	ci right 1.389356e-05	k: 2	n:520000
BTNL8   520000 perm   223 sec   (2336 perm/sec)   p_kst 3.846154e-06   p_cons 6.573269e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 2.029714e-02	ci left: 6.508136e-02	ci right 6.641773e-02	k: 34846	n:530000
KS ci ratio: 2.263205e+00	ci left: 4.569990e-07	ci right 1.363142e-05	k: 2	n:530000
BTNL8   530000 perm   229 sec   (2313 perm/sec)   p_kst 3.773585e-06   p_cons 6.574717e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 2.010938e-02	ci left: 6.508114e-02	ci right 6.640500e-02	k: 35500	n:540000
KS ci ratio: 2.263205e+00	ci left: 4.485360e-07	ci right 1.337899e-05	k: 2	n:540000
BTNL8   540000 perm   236 sec   (2291 perm/sec)   p_kst 3.703704e-06   p_cons 6.574074e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 1.992468e-02	ci left: 6.509366e-02	ci right 6.640547e-02	k: 36161	n:550000
KS ci ratio: 2.263205e+00	ci left: 4.403808e-07	ci right 1.313573e-05	k: 2	n:550000
BTNL8   550000 perm   243 sec   (2267 perm/sec)   p_kst 3.636364e-06   p_cons 6.574727e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 1.973551e-02	ci left: 6.516443e-02	ci right 6.646506e-02	k: 36855	n:560000
KS ci ratio: 2.263205e+00	ci left: 4.325169e-07	ci right 1.290117e-05	k: 2	n:560000
BTNL8   560000 perm   249 sec   (2245 perm/sec)   p_kst 3.571429e-06   p_cons 6.581250e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 1.956250e-02	ci left: 6.516468e-02	ci right 6.645378e-02	k: 37510	n:570000
KS ci ratio: 2.263205e+00	ci left: 4.249288e-07	ci right 1.267483e-05	k: 2	n:570000
BTNL8   570000 perm   256 sec   (2225 perm/sec)   p_kst 3.508772e-06   p_cons 6.580702e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 1.939233e-02	ci left: 6.517525e-02	ci right 6.645322e-02	k: 38171	n:580000
KS ci ratio: 2.263205e+00	ci left: 4.176025e-07	ci right 1.245630e-05	k: 2	n:580000
BTNL8   580000 perm   263 sec   (2204 perm/sec)   p_kst 3.448276e-06   p_cons 6.581207e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 1.923024e-02	ci left: 6.516190e-02	ci right 6.642881e-02	k: 38818	n:590000
KS ci ratio: 2.263205e+00	ci left: 4.105245e-07	ci right 1.224518e-05	k: 2	n:590000
BTNL8   590000 perm   270 sec   (2184 perm/sec)   p_kst 3.389831e-06   p_cons 6.579322e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 1.906258e-02	ci left: 6.521042e-02	ci right 6.646710e-02	k: 39502	n:600000
KS ci ratio: 2.263206e+00	ci left: 4.036824e-07	ci right 1.204109e-05	k: 2	n:600000
BTNL8   600000 perm   277 sec   (2165 perm/sec)   p_kst 3.333333e-06   p_cons 6.583667e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 1.890780e-02	ci left: 6.520191e-02	ci right 6.644812e-02	k: 40152	n:610000
KS ci ratio: 2.263206e+00	ci left: 3.970646e-07	ci right 1.184370e-05	k: 2	n:610000
BTNL8   610000 perm   284 sec   (2146 perm/sec)   p_kst 3.278689e-06   p_cons 6.582295e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 1.875648e-02	ci left: 6.519532e-02	ci right 6.643132e-02	k: 40803	n:620000
KS ci ratio: 2.263206e+00	ci left: 3.906604e-07	ci right 1.165267e-05	k: 2	n:620000
BTNL8   620000 perm   292 sec   (2126 perm/sec)   p_kst 3.225806e-06   p_cons 6.581129e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 1.861018e-02	ci left: 6.517950e-02	ci right 6.640545e-02	k: 41448	n:630000
KS ci ratio: 2.263206e+00	ci left: 3.844594e-07	ci right 1.146771e-05	k: 2	n:630000
BTNL8   630000 perm   299 sec   (2107 perm/sec)   p_kst 3.174603e-06   p_cons 6.579048e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 1.846607e-02	ci left: 6.517198e-02	ci right 6.638820e-02	k: 42098	n:640000
KS ci ratio: 2.263206e+00	ci left: 3.784522e-07	ci right 1.128853e-05	k: 2	n:640000
BTNL8   640000 perm   307 sec   (2088 perm/sec)   p_kst 3.125000e-06   p_cons 6.577813e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 1.832136e-02	ci left: 6.519078e-02	ci right 6.639771e-02	k: 42765	n:650000
KS ci ratio: 2.263206e+00	ci left: 3.726299e-07	ci right 1.111486e-05	k: 2	n:650000
BTNL8   650000 perm   314 sec   (2070 perm/sec)   p_kst 3.076923e-06   p_cons 6.579231e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 1.817620e-02	ci left: 6.523468e-02	ci right 6.643277e-02	k: 43449	n:660000
KS ci ratio: 2.263206e+00	ci left: 3.669840e-07	ci right 1.094645e-05	k: 2	n:660000
BTNL8   660000 perm   322 sec   (2052 perm/sec)   p_kst 3.030303e-06   p_cons 6.583182e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 1.804472e-02	ci left: 6.520746e-02	ci right 6.639629e-02	k: 44086	n:670000
KS ci ratio: 2.263206e+00	ci left: 3.615066e-07	ci right 1.078307e-05	k: 2	n:670000
BTNL8   670000 perm   329 sec   (2035 perm/sec)   p_kst 2.985075e-06   p_cons 6.580000e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 1.789999e-02	ci left: 6.529091e-02	ci right 6.647162e-02	k: 44798	n:680000
KS ci ratio: 2.263206e+00	ci left: 3.561903e-07	ci right 1.062450e-05	k: 2	n:680000
BTNL8   680000 perm   337 sec   (2018 perm/sec)   p_kst 2.941176e-06   p_cons 6.587941e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 1.776663e-02	ci left: 6.531713e-02	ci right 6.648942e-02	k: 45472	n:690000
KS ci ratio: 2.263206e+00	ci left: 3.510281e-07	ci right 1.047052e-05	k: 2	n:690000
BTNL8   690000 perm   345 sec   (2001 perm/sec)   p_kst 2.898551e-06   p_cons 6.590145e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 1.764275e-02	ci left: 6.529710e-02	ci right 6.646078e-02	k: 46114	n:700000
KS ci ratio: 2.263207e+00	ci left: 3.460134e-07	ci right 1.032094e-05	k: 2	n:700000
BTNL8   700000 perm   353 sec   (1984 perm/sec)   p_kst 2.857143e-06   p_cons 6.587714e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 1.751642e-02	ci left: 6.531274e-02	ci right 6.646827e-02	k: 46781	n:710000
KS ci ratio: 2.263207e+00	ci left: 3.411400e-07	ci right 1.017558e-05	k: 2	n:710000
BTNL8   710000 perm   361 sec   (1967 perm/sec)   p_kst 2.816901e-06   p_cons 6.588873e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 1.739708e-02	ci left: 6.529753e-02	ci right 6.644485e-02	k: 47426	n:720000
KS ci ratio: 1.959993e+00	ci left: 8.592677e-07	ci right 1.217672e-05	k: 3	n:720000
BTNL8   720000 perm   369 sec   (1950 perm/sec)   p_kst 4.166667e-06   p_cons 6.586944e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 1.728111e-02	ci left: 6.527595e-02	ci right 6.641517e-02	k: 48066	n:730000
KS ci ratio: 1.753070e+00	ci left: 1.492968e-06	ci right 1.402951e-05	k: 4	n:730000
BTNL8   730000 perm   377 sec   (1934 perm/sec)   p_kst 5.479452e-06   p_cons 6.584384e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 1.716046e-02	ci left: 6.530478e-02	ci right 6.643646e-02	k: 48743	n:740000
KS ci ratio: 1.753070e+00	ci left: 1.472793e-06	ci right 1.383993e-05	k: 4	n:740000
BTNL8   740000 perm   386 sec   (1919 perm/sec)   p_kst 5.405405e-06   p_cons 6.586892e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 1.704968e-02	ci left: 6.527974e-02	ci right 6.640362e-02	k: 49380	n:750000
KS ci ratio: 1.753070e+00	ci left: 1.453156e-06	ci right 1.365539e-05	k: 4	n:750000
BTNL8   750000 perm   394 sec   (1903 perm/sec)   p_kst 5.333333e-06   p_cons 6.584000e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 1.694283e-02	ci left: 6.524228e-02	ci right 6.635840e-02	k: 50007	n:760000
KS ci ratio: 1.753070e+00	ci left: 1.434035e-06	ci right 1.347572e-05	k: 4	n:760000
BTNL8   760000 perm   403 sec   (1888 perm/sec)   p_kst 5.263158e-06   p_cons 6.579868e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 1.683281e-02	ci left: 6.524333e-02	ci right 6.635215e-02	k: 50663	n:770000
KS ci ratio: 1.753070e+00	ci left: 1.415411e-06	ci right 1.330071e-05	k: 4	n:770000
BTNL8   770000 perm   411 sec   (1873 perm/sec)   p_kst 5.194805e-06   p_cons 6.579610e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 1.780742e-02	ci left: 5.797124e-02	ci right 5.901409e-02	k: 45623	n:780000
KS ci ratio: 1.753071e+00	ci left: 1.397265e-06	ci right 1.313019e-05	k: 4	n:780000
BTNL8   780000 perm   420 sec   (1858 perm/sec)   p_kst 5.128205e-06   p_cons 5.849103e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 1.768378e-02	ci left: 5.804020e-02	ci right 5.907697e-02	k: 46260	n:790000
KS ci ratio: 1.753071e+00	ci left: 1.379578e-06	ci right 1.296399e-05	k: 4	n:790000
BTNL8   790000 perm   429 sec   (1843 perm/sec)   p_kst 5.063291e-06   p_cons 5.855696e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 1.757741e-02	ci left: 5.801534e-02	ci right 5.904536e-02	k: 46823	n:800000
KS ci ratio: 1.753071e+00	ci left: 1.362333e-06	ci right 1.280194e-05	k: 4	n:800000
BTNL8   800000 perm   438 sec   (1827 perm/sec)   p_kst 5.000000e-06   p_cons 5.852875e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 1.747176e-02	ci left: 5.799848e-02	ci right 5.902196e-02	k: 47392	n:810000
KS ci ratio: 1.753071e+00	ci left: 1.345514e-06	ci right 1.264389e-05	k: 4	n:810000
BTNL8   810000 perm   447 sec   (1813 perm/sec)   p_kst 4.938272e-06   p_cons 5.850864e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 1.737165e-02	ci left: 5.795898e-02	ci right 5.897585e-02	k: 47942	n:820000
KS ci ratio: 1.753071e+00	ci left: 1.329106e-06	ci right 1.248969e-05	k: 4	n:820000
BTNL8   820000 perm   456 sec   (1798 perm/sec)   p_kst 4.878049e-06   p_cons 5.846585e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 1.726058e-02	ci left: 5.800085e-02	ci right 5.901187e-02	k: 48559	n:830000
KS ci ratio: 1.753071e+00	ci left: 1.313092e-06	ci right 1.233922e-05	k: 4	n:830000
BTNL8   830000 perm   465 sec   (1785 perm/sec)   p_kst 4.819277e-06   p_cons 5.850482e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 1.715680e-02	ci left: 5.800854e-02	ci right 5.901356e-02	k: 49148	n:840000
KS ci ratio: 1.753071e+00	ci left: 1.297460e-06	ci right 1.219232e-05	k: 4	n:840000
BTNL8   840000 perm   474 sec   (1770 perm/sec)   p_kst 4.761905e-06   p_cons 5.850952e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 1.706088e-02	ci left: 5.797739e-02	ci right 5.897621e-02	k: 49704	n:850000
KS ci ratio: 1.753071e+00	ci left: 1.282196e-06	ci right 1.204888e-05	k: 4	n:850000
BTNL8   850000 perm   484 sec   (1757 perm/sec)   p_kst 4.705882e-06   p_cons 5.847529e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 1.695956e-02	ci left: 5.799216e-02	ci right 5.898523e-02	k: 50299	n:860000
KS ci ratio: 1.753071e+00	ci left: 1.267287e-06	ci right 1.190878e-05	k: 4	n:860000
BTNL8   860000 perm   493 sec   (1744 perm/sec)   p_kst 4.651163e-06   p_cons 5.848721e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 1.686443e-02	ci left: 5.797798e-02	ci right 5.896519e-02	k: 50869	n:870000
KS ci ratio: 1.753071e+00	ci left: 1.252720e-06	ci right 1.177190e-05	k: 4	n:870000
BTNL8   870000 perm   503 sec   (1730 perm/sec)   p_kst 4.597701e-06   p_cons 5.847011e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 1.676518e-02	ci left: 5.800149e-02	ci right 5.898323e-02	k: 51472	n:880000
KS ci ratio: 1.753071e+00	ci left: 1.238485e-06	ci right 1.163813e-05	k: 4	n:880000
BTNL8   880000 perm   512 sec   (1717 perm/sec)   p_kst 4.545455e-06   p_cons 5.849091e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 1.667037e-02	ci left: 5.800659e-02	ci right 5.898281e-02	k: 52059	n:890000
KS ci ratio: 1.753071e+00	ci left: 1.224569e-06	ci right 1.150736e-05	k: 4	n:890000
BTNL8   890000 perm   522 sec   (1704 perm/sec)   p_kst 4.494382e-06   p_cons 5.849326e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 1.657414e-02	ci left: 5.803150e-02	ci right 5.900245e-02	k: 52664	n:900000
KS ci ratio: 1.753071e+00	ci left: 1.210963e-06	ci right 1.137950e-05	k: 4	n:900000
BTNL8   900000 perm   532 sec   (1692 perm/sec)   p_kst 4.444444e-06   p_cons 5.851556e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 1.648828e-02	ci left: 5.799787e-02	ci right 5.896318e-02	k: 53216	n:910000
KS ci ratio: 1.753072e+00	ci left: 1.197656e-06	ci right 1.125445e-05	k: 4	n:910000
BTNL8   910000 perm   542 sec   (1679 perm/sec)   p_kst 4.395604e-06   p_cons 5.847912e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 1.639516e-02	ci left: 5.802237e-02	ci right 5.898259e-02	k: 53821	n:920000
KS ci ratio: 1.753072e+00	ci left: 1.184638e-06	ci right 1.113212e-05	k: 4	n:920000
BTNL8   920000 perm   552 sec   (1667 perm/sec)   p_kst 4.347826e-06   p_cons 5.850109e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 1.630598e-02	ci left: 5.803029e-02	ci right 5.898536e-02	k: 54411	n:930000
KS ci ratio: 1.753072e+00	ci left: 1.171899e-06	ci right 1.101242e-05	k: 4	n:930000
BTNL8   930000 perm   562 sec   (1655 perm/sec)   p_kst 4.301075e-06   p_cons 5.850645e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 1.621230e-02	ci left: 5.807833e-02	ci right 5.902865e-02	k: 55039	n:940000
KS ci ratio: 1.753072e+00	ci left: 1.159432e-06	ci right 1.089527e-05	k: 4	n:940000
BTNL8   940000 perm   572 sec   (1643 perm/sec)   p_kst 4.255319e-06   p_cons 5.855213e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 1.613145e-02	ci left: 5.804882e-02	ci right 5.899388e-02	k: 55594	n:950000
KS ci ratio: 1.753072e+00	ci left: 1.147228e-06	ci right 1.078058e-05	k: 4	n:950000
BTNL8   950000 perm   582 sec   (1631 perm/sec)   p_kst 4.210526e-06   p_cons 5.852000e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 1.605331e-02	ci left: 5.800956e-02	ci right 5.894936e-02	k: 56139	n:960000
KS ci ratio: 1.753072e+00	ci left: 1.135278e-06	ci right 1.066829e-05	k: 4	n:960000
BTNL8   960000 perm   593 sec   (1620 perm/sec)   p_kst 4.166667e-06   p_cons 5.847812e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 1.597136e-02	ci left: 5.800501e-02	ci right 5.893990e-02	k: 56717	n:970000
KS ci ratio: 1.753072e+00	ci left: 1.123574e-06	ci right 1.055830e-05	k: 4	n:970000
BTNL8   970000 perm   603 sec   (1609 perm/sec)   p_kst 4.123711e-06   p_cons 5.847113e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 1.588948e-02	ci left: 5.800870e-02	ci right 5.893881e-02	k: 57303	n:980000
KS ci ratio: 1.753072e+00	ci left: 1.112109e-06	ci right 1.045057e-05	k: 4	n:980000
BTNL8   980000 perm   613 sec   (1598 perm/sec)   p_kst 4.081633e-06   p_cons 5.847245e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 1.580696e-02	ci left: 5.802541e-02	ci right 5.895091e-02	k: 57902	n:990000
KS ci ratio: 1.753072e+00	ci left: 1.100875e-06	ci right 1.034501e-05	k: 4	n:990000
BTNL8   990000 perm   624 sec   (1587 perm/sec)   p_kst 4.040404e-06   p_cons 5.848687e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 1.572714e-02	ci left: 5.803184e-02	ci right 5.895272e-02	k: 58491	n:1000000
KS ci ratio: 1.753072e+00	ci left: 1.089866e-06	ci right 1.024156e-05	k: 4	n:1000000
BTNL8   1000000 perm   634 sec   (1576 perm/sec)   p_kst 4.000000e-06   p_cons 5.849100e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 1.565217e-02	ci left: 5.801250e-02	ci right 5.892865e-02	k: 59054	n:1010000
KS ci ratio: 1.753072e+00	ci left: 1.079076e-06	ci right 1.014016e-05	k: 4	n:1010000
BTNL8   1010000 perm   645 sec   (1565 perm/sec)   p_kst 3.960396e-06   p_cons 5.846931e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 1.557674e-02	ci left: 5.800429e-02	ci right 5.891586e-02	k: 59628	n:1020000
KS ci ratio: 1.753072e+00	ci left: 1.068496e-06	ci right 1.004074e-05	k: 4	n:1020000
BTNL8   1020000 perm   656 sec   (1555 perm/sec)   p_kst 3.921569e-06   p_cons 5.845882e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 1.550047e-02	ci left: 5.800980e-02	ci right 5.891696e-02	k: 60216	n:1030000
KS ci ratio: 1.753072e+00	ci left: 1.058123e-06	ci right 9.943260e-06	k: 4	n:1030000
BTNL8   1030000 perm   667 sec   (1544 perm/sec)   p_kst 3.883495e-06   p_cons 5.846214e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 1.542518e-02	ci left: 5.801617e-02	ci right 5.891898e-02	k: 60805	n:1040000
KS ci ratio: 1.753072e+00	ci left: 1.047948e-06	ci right 9.847652e-06	k: 4	n:1040000
BTNL8   1040000 perm   678 sec   (1533 perm/sec)   p_kst 3.846154e-06   p_cons 5.846635e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 1.535165e-02	ci left: 5.801769e-02	ci right 5.891618e-02	k: 61389	n:1050000
KS ci ratio: 1.753072e+00	ci left: 1.037968e-06	ci right 9.753865e-06	k: 4	n:1050000
BTNL8   1050000 perm   690 sec   (1522 perm/sec)   p_kst 3.809524e-06   p_cons 5.846571e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 1.528098e-02	ci left: 5.800603e-02	ci right 5.890016e-02	k: 61959	n:1060000
KS ci ratio: 1.753072e+00	ci left: 1.028176e-06	ci right 9.661848e-06	k: 4	n:1060000
BTNL8   1060000 perm   703 sec   (1508 perm/sec)   p_kst 3.773585e-06   p_cons 5.845189e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 1.521025e-02	ci left: 5.800204e-02	ci right 5.889194e-02	k: 62537	n:1070000
KS ci ratio: 1.753072e+00	ci left: 1.018567e-06	ci right 9.571550e-06	k: 4	n:1070000
BTNL8   1070000 perm   715 sec   (1497 perm/sec)   p_kst 3.738318e-06   p_cons 5.844579e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 1.514495e-02	ci left: 5.796584e-02	ci right 5.885134e-02	k: 63080	n:1080000
KS ci ratio: 1.753072e+00	ci left: 1.009135e-06	ci right 9.482925e-06	k: 4	n:1080000
BTNL8   1080000 perm   726 sec   (1487 perm/sec)   p_kst 3.703704e-06   p_cons 5.840741e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 1.508263e-02	ci left: 5.791478e-02	ci right 5.879582e-02	k: 63606	n:1090000
KS ci ratio: 1.753072e+00	ci left: 9.998774e-07	ci right 9.395926e-06	k: 4	n:1090000
BTNL8   1090000 perm   737 sec   (1478 perm/sec)   p_kst 3.669725e-06   p_cons 5.835413e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 1.500530e-02	ci left: 5.797970e-02	ci right 5.885717e-02	k: 64259	n:1100000
KS ci ratio: 1.753073e+00	ci left: 9.907876e-07	ci right 9.310509e-06	k: 4	n:1100000
BTNL8   1100000 perm   749 sec   (1469 perm/sec)   p_kst 3.636364e-06   p_cons 5.841727e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 1.493929e-02	ci left: 5.796895e-02	ci right 5.884236e-02	k: 64829	n:1110000
KS ci ratio: 1.753073e+00	ci left: 9.818615e-07	ci right 9.226631e-06	k: 4	n:1110000
BTNL8   1110000 perm   760 sec   (1460 perm/sec)   p_kst 3.603604e-06   p_cons 5.840450e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 1.487330e-02	ci left: 5.796463e-02	ci right 5.883409e-02	k: 65406	n:1120000
KS ci ratio: 1.753073e+00	ci left: 9.730949e-07	ci right 9.144250e-06	k: 4	n:1120000
BTNL8   1120000 perm   772 sec   (1451 perm/sec)   p_kst 3.571429e-06   p_cons 5.839821e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 1.480877e-02	ci left: 5.795598e-02	ci right 5.882151e-02	k: 65978	n:1130000
KS ci ratio: 1.753073e+00	ci left: 9.644834e-07	ci right 9.063328e-06	k: 4	n:1130000
BTNL8   1130000 perm   784 sec   (1442 perm/sec)   p_kst 3.539823e-06   p_cons 5.838761e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 1.474848e-02	ci left: 5.792214e-02	ci right 5.878361e-02	k: 66521	n:1140000
KS ci ratio: 1.753073e+00	ci left: 9.560231e-07	ci right 8.983825e-06	k: 4	n:1140000
BTNL8   1140000 perm   795 sec   (1433 perm/sec)   p_kst 3.508772e-06   p_cons 5.835175e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 1.468579e-02	ci left: 5.791230e-02	ci right 5.876993e-02	k: 67091	n:1150000
KS ci ratio: 1.753073e+00	ci left: 9.477098e-07	ci right 8.905705e-06	k: 4	n:1150000
BTNL8   1150000 perm   808 sec   (1424 perm/sec)   p_kst 3.478261e-06   p_cons 5.834000e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 1.462332e-02	ci left: 5.790693e-02	ci right 5.876080e-02	k: 67666	n:1160000
KS ci ratio: 1.753073e+00	ci left: 9.395399e-07	ci right 8.828932e-06	k: 4	n:1160000
BTNL8   1160000 perm   820 sec   (1415 perm/sec)   p_kst 3.448276e-06   p_cons 5.833276e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 1.456164e-02	ci left: 5.790165e-02	ci right 5.875182e-02	k: 68241	n:1170000
KS ci ratio: 1.753073e+00	ci left: 9.315096e-07	ci right 8.753471e-06	k: 4	n:1170000
BTNL8   1170000 perm   832 sec   (1406 perm/sec)   p_kst 3.418803e-06   p_cons 5.832564e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 1.450207e-02	ci left: 5.788634e-02	ci right 5.873278e-02	k: 68804	n:1180000
KS ci ratio: 1.753073e+00	ci left: 9.236155e-07	ci right 8.679289e-06	k: 4	n:1180000
BTNL8   1180000 perm   844 sec   (1398 perm/sec)   p_kst 3.389831e-06   p_cons 5.830847e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 1.444423e-02	ci left: 5.786376e-02	ci right 5.870646e-02	k: 69358	n:1190000
KS ci ratio: 1.753073e+00	ci left: 9.158540e-07	ci right 8.606354e-06	k: 4	n:1190000
BTNL8   1190000 perm   856 sec   (1389 perm/sec)   p_kst 3.361345e-06   p_cons 5.828403e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 1.438477e-02	ci left: 5.785900e-02	ci right 5.869813e-02	k: 69933	n:1200000
KS ci ratio: 1.753073e+00	ci left: 9.082219e-07	ci right 8.534635e-06	k: 4	n:1200000
BTNL8   1200000 perm   869 sec   (1381 perm/sec)   p_kst 3.333333e-06   p_cons 5.827750e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 1.432475e-02	ci left: 5.786421e-02	ci right 5.869989e-02	k: 70520	n:1210000
KS ci ratio: 1.753073e+00	ci left: 9.007159e-07	ci right 8.464101e-06	k: 4	n:1210000
BTNL8   1210000 perm   881 sec   (1373 perm/sec)   p_kst 3.305785e-06   p_cons 5.828099e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 1.426697e-02	ci left: 5.785791e-02	ci right 5.869010e-02	k: 71093	n:1220000
KS ci ratio: 1.753073e+00	ci left: 8.933330e-07	ci right 8.394723e-06	k: 4	n:1220000
BTNL8   1220000 perm   894 sec   (1365 perm/sec)   p_kst 3.278689e-06   p_cons 5.827295e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 1.420746e-02	ci left: 5.787035e-02	ci right 5.869922e-02	k: 71689	n:1230000
KS ci ratio: 1.753073e+00	ci left: 8.860701e-07	ci right 8.326474e-06	k: 4	n:1230000
BTNL8   1230000 perm   907 sec   (1357 perm/sec)   p_kst 3.252033e-06   p_cons 5.828374e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 1.414516e-02	ci left: 5.790992e-02	ci right 5.873569e-02	k: 72319	n:1240000
KS ci ratio: 1.753073e+00	ci left: 8.789244e-07	ci right 8.259325e-06	k: 4	n:1240000
BTNL8   1240000 perm   920 sec   (1348 perm/sec)   p_kst 3.225806e-06   p_cons 5.832177e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 1.408910e-02	ci left: 5.790661e-02	ci right 5.872904e-02	k: 72896	n:1250000
KS ci ratio: 1.753073e+00	ci left: 8.718930e-07	ci right 8.193250e-06	k: 4	n:1250000
BTNL8   1250000 perm   933 sec   (1340 perm/sec)   p_kst 3.200000e-06   p_cons 5.831680e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 1.403685e-02	ci left: 5.787884e-02	ci right 5.869780e-02	k: 73442	n:1260000
KS ci ratio: 1.753073e+00	ci left: 8.649732e-07	ci right 8.128225e-06	k: 4	n:1260000
BTNL8   1260000 perm   946 sec   (1332 perm/sec)   p_kst 3.174603e-06   p_cons 5.828730e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 1.398087e-02	ci left: 5.788526e-02	ci right 5.870101e-02	k: 74031	n:1270000
KS ci ratio: 1.753073e+00	ci left: 8.581624e-07	ci right 8.064223e-06	k: 4	n:1270000
BTNL8   1270000 perm   959 sec   (1324 perm/sec)   p_kst 3.149606e-06   p_cons 5.829213e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 1.392951e-02	ci left: 5.786043e-02	ci right 5.867282e-02	k: 74580	n:1280000
KS ci ratio: 1.753073e+00	ci left: 8.514580e-07	ci right 8.001222e-06	k: 4	n:1280000
BTNL8   1280000 perm   973 sec   (1316 perm/sec)   p_kst 3.125000e-06   p_cons 5.826563e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 1.387509e-02	ci left: 5.786459e-02	ci right 5.867383e-02	k: 75166	n:1290000
KS ci ratio: 1.753073e+00	ci left: 8.448575e-07	ci right 7.939197e-06	k: 4	n:1290000
BTNL8   1290000 perm   986 sec   (1309 perm/sec)   p_kst 3.100775e-06   p_cons 5.826822e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 1.381820e-02	ci left: 5.789322e-02	ci right 5.869952e-02	k: 75784	n:1300000
KS ci ratio: 1.753073e+00	ci left: 8.383586e-07	ci right 7.878126e-06	k: 4	n:1300000
BTNL8   1300000 perm   999 sec   (1302 perm/sec)   p_kst 3.076923e-06   p_cons 5.829538e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 1.376325e-02	ci left: 5.791153e-02	ci right 5.871485e-02	k: 76389	n:1310000
KS ci ratio: 1.753073e+00	ci left: 8.319589e-07	ci right 7.817988e-06	k: 4	n:1310000
BTNL8   1310000 perm   1012 sec   (1294 perm/sec)   p_kst 3.053435e-06   p_cons 5.831221e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 1.371226e-02	ci left: 5.790314e-02	ci right 5.870335e-02	k: 76959	n:1320000
KS ci ratio: 1.753073e+00	ci left: 8.256562e-07	ci right 7.758761e-06	k: 4	n:1320000
BTNL8   1320000 perm   1026 sec   (1287 perm/sec)   p_kst 3.030303e-06   p_cons 5.830227e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 1.366127e-02	ci left: 5.789938e-02	ci right 5.869653e-02	k: 77535	n:1330000
KS ci ratio: 1.753073e+00	ci left: 8.194482e-07	ci right 7.700425e-06	k: 4	n:1330000
BTNL8   1330000 perm   1040 sec   (1279 perm/sec)   p_kst 3.007519e-06   p_cons 5.829699e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 1.361057e-02	ci left: 5.789791e-02	ci right 5.869206e-02	k: 78114	n:1340000
KS ci ratio: 1.753073e+00	ci left: 8.133329e-07	ci right 7.642959e-06	k: 4	n:1340000
BTNL8   1340000 perm   1053 sec   (1272 perm/sec)   p_kst 2.985075e-06   p_cons 5.829403e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 1.355795e-02	ci left: 5.791640e-02	ci right 5.870772e-02	k: 78720	n:1350000
KS ci ratio: 1.753073e+00	ci left: 8.073083e-07	ci right 7.586344e-06	k: 4	n:1350000
BTNL8   1350000 perm   1067 sec   (1265 perm/sec)   p_kst 2.962963e-06   p_cons 5.831111e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 1.350685e-02	ci left: 5.792730e-02	ci right 5.871576e-02	k: 79316	n:1360000
KS ci ratio: 1.753073e+00	ci left: 8.013722e-07	ci right 7.530563e-06	k: 4	n:1360000
BTNL8   1360000 perm   1081 sec   (1259 perm/sec)   p_kst 2.941176e-06   p_cons 5.832059e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 1.345749e-02	ci left: 5.792859e-02	ci right 5.871416e-02	k: 79899	n:1370000
KS ci ratio: 1.753073e+00	ci left: 7.955227e-07	ci right 7.475595e-06	k: 4	n:1370000
BTNL8   1370000 perm   1095 sec   (1252 perm/sec)   p_kst 2.919708e-06   p_cons 5.832044e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 1.340795e-02	ci left: 5.793564e-02	ci right 5.871839e-02	k: 80490	n:1380000
KS ci ratio: 1.753073e+00	ci left: 7.897581e-07	ci right 7.421424e-06	k: 4	n:1380000
BTNL8   1380000 perm   1109 sec   (1245 perm/sec)   p_kst 2.898551e-06   p_cons 5.832609e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 1.335904e-02	ci left: 5.794188e-02	ci right 5.872183e-02	k: 81080	n:1390000
KS ci ratio: 1.753074e+00	ci left: 7.840763e-07	ci right 7.368033e-06	k: 4	n:1390000
BTNL8   1390000 perm   1123 sec   (1238 perm/sec)   p_kst 2.877698e-06   p_cons 5.833094e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 1.331102e-02	ci left: 5.794518e-02	ci right 5.872236e-02	k: 81666	n:1400000
KS ci ratio: 1.753074e+00	ci left: 7.784758e-07	ci right 7.315404e-06	k: 4	n:1400000
BTNL8   1400000 perm   1137 sec   (1232 perm/sec)   p_kst 2.857143e-06   p_cons 5.833286e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 1.326573e-02	ci left: 5.793007e-02	ci right 5.870437e-02	k: 82226	n:1410000
KS ci ratio: 1.753074e+00	ci left: 7.729547e-07	ci right 7.263522e-06	k: 4	n:1410000
BTNL8   1410000 perm   1151 sec   (1225 perm/sec)   p_kst 2.836879e-06   p_cons 5.831631e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 1.322056e-02	ci left: 5.791797e-02	ci right 5.868946e-02	k: 82790	n:1420000
KS ci ratio: 1.753074e+00	ci left: 7.675113e-07	ci right 7.212371e-06	k: 4	n:1420000
BTNL8   1420000 perm   1165 sec   (1218 perm/sec)   p_kst 2.816901e-06   p_cons 5.830282e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 1.317358e-02	ci left: 5.792488e-02	ci right 5.869370e-02	k: 83381	n:1430000
KS ci ratio: 1.753074e+00	ci left: 7.621441e-07	ci right 7.161934e-06	k: 4	n:1430000
BTNL8   1430000 perm   1180 sec   (1212 perm/sec)   p_kst 2.797203e-06   p_cons 5.830839e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 1.312785e-02	ci left: 5.792546e-02	ci right 5.869160e-02	k: 83963	n:1440000
KS ci ratio: 1.753074e+00	ci left: 7.568515e-07	ci right 7.112199e-06	k: 4	n:1440000
BTNL8   1440000 perm   1194 sec   (1206 perm/sec)   p_kst 2.777778e-06   p_cons 5.830764e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 1.308194e-02	ci left: 5.793154e-02	ci right 5.869506e-02	k: 84553	n:1450000
KS ci ratio: 1.753074e+00	ci left: 7.516318e-07	ci right 7.063149e-06	k: 4	n:1450000
BTNL8   1450000 perm   1209 sec   (1200 perm/sec)   p_kst 2.758621e-06   p_cons 5.831241e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 1.303935e-02	ci left: 5.791364e-02	ci right 5.867442e-02	k: 85108	n:1460000
KS ci ratio: 1.753074e+00	ci left: 7.464836e-07	ci right 7.014772e-06	k: 4	n:1460000
BTNL8   1460000 perm   1223 sec   (1193 perm/sec)   p_kst 2.739726e-06   p_cons 5.829315e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 1.299242e-02	ci left: 5.793600e-02	ci right 5.869431e-02	k: 85722	n:1470000
KS ci ratio: 1.753074e+00	ci left: 7.414055e-07	ci right 6.967052e-06	k: 4	n:1470000
BTNL8   1470000 perm   1238 sec   (1187 perm/sec)   p_kst 2.721088e-06   p_cons 5.831429e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 1.294998e-02	ci left: 5.792438e-02	ci right 5.868005e-02	k: 86286	n:1480000
KS ci ratio: 1.753074e+00	ci left: 7.363960e-07	ci right 6.919978e-06	k: 4	n:1480000
BTNL8   1480000 perm   1253 sec   (1181 perm/sec)   p_kst 2.702703e-06   p_cons 5.830135e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 1.290487e-02	ci left: 5.793902e-02	ci right 5.869223e-02	k: 86889	n:1490000
KS ci ratio: 1.753074e+00	ci left: 7.314537e-07	ci right 6.873535e-06	k: 4	n:1490000
BTNL8   1490000 perm   1268 sec   (1175 perm/sec)   p_kst 2.684564e-06   p_cons 5.831477e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 1.286227e-02	ci left: 5.793619e-02	ci right 5.868685e-02	k: 87466	n:1500000
KS ci ratio: 1.753074e+00	ci left: 7.265774e-07	ci right 6.827712e-06	k: 4	n:1500000
BTNL8   1500000 perm   1283 sec   (1169 perm/sec)   p_kst 2.666667e-06   p_cons 5.831067e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 1.282178e-02	ci left: 5.791887e-02	ci right 5.866693e-02	k: 88021	n:1510000
KS ci ratio: 1.753074e+00	ci left: 7.217656e-07	ci right 6.782495e-06	k: 4	n:1510000
BTNL8   1510000 perm   1298 sec   (1163 perm/sec)   p_kst 2.649007e-06   p_cons 5.829205e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 1.278045e-02	ci left: 5.791228e-02	ci right 5.865783e-02	k: 88592	n:1520000
KS ci ratio: 1.753074e+00	ci left: 7.170171e-07	ci right 6.737873e-06	k: 4	n:1520000
BTNL8   1520000 perm   1314 sec   (1157 perm/sec)   p_kst 2.631579e-06   p_cons 5.828421e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 1.273799e-02	ci left: 5.791881e-02	ci right 5.866195e-02	k: 89183	n:1530000
KS ci ratio: 1.753074e+00	ci left: 7.123308e-07	ci right 6.693835e-06	k: 4	n:1530000
BTNL8   1530000 perm   1329 sec   (1151 perm/sec)   p_kst 2.614379e-06   p_cons 5.828954e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 1.269551e-02	ci left: 5.792915e-02	ci right 5.866992e-02	k: 89780	n:1540000
KS ci ratio: 1.600330e+00	ci left: 1.054213e-06	ci right 7.576823e-06	k: 5	n:1540000
BTNL8   1540000 perm   1344 sec   (1145 perm/sec)   p_kst 3.246753e-06   p_cons 5.829870e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 1.265449e-02	ci left: 5.793035e-02	ci right 5.866872e-02	k: 90363	n:1550000
KS ci ratio: 1.600330e+00	ci left: 1.047411e-06	ci right 7.527940e-06	k: 5	n:1550000
BTNL8   1550000 perm   1360 sec   (1140 perm/sec)   p_kst 3.225806e-06   p_cons 5.829871e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 1.261291e-02	ci left: 5.793984e-02	ci right 5.867590e-02	k: 90959	n:1560000
KS ci ratio: 1.600330e+00	ci left: 1.040697e-06	ci right 7.479684e-06	k: 5	n:1560000
BTNL8   1560000 perm   1376 sec   (1134 perm/sec)   p_kst 3.205128e-06   p_cons 5.830705e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 1.257254e-02	ci left: 5.794224e-02	ci right 5.867595e-02	k: 91544	n:1570000
KS ci ratio: 1.600330e+00	ci left: 1.034069e-06	ci right 7.432043e-06	k: 5	n:1570000
BTNL8   1570000 perm   1391 sec   (1128 perm/sec)   p_kst 3.184713e-06   p_cons 5.830828e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 1.253204e-02	ci left: 5.794903e-02	ci right 5.868044e-02	k: 92136	n:1580000
KS ci ratio: 1.600330e+00	ci left: 1.027524e-06	ci right 7.385005e-06	k: 5	n:1580000
BTNL8   1580000 perm   1407 sec   (1123 perm/sec)   p_kst 3.164557e-06   p_cons 5.831392e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 1.249115e-02	ci left: 5.796263e-02	ci right 5.869181e-02	k: 92739	n:1590000
KS ci ratio: 1.481617e+00	ci left: 1.384840e-06	ci right 8.213487e-06	k: 6	n:1590000
BTNL8   1590000 perm   1423 sec   (1118 perm/sec)   p_kst 3.773585e-06   p_cons 5.832642e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 1.245285e-02	ci left: 5.795675e-02	ci right 5.868360e-02	k: 93311	n:1600000
KS ci ratio: 1.481617e+00	ci left: 1.376185e-06	ci right 8.162153e-06	k: 6	n:1600000
BTNL8   1600000 perm   1439 sec   (1112 perm/sec)   p_kst 3.750000e-06   p_cons 5.831937e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 1.241399e-02	ci left: 5.795899e-02	ci right 5.868359e-02	k: 93896	n:1610000
KS ci ratio: 1.481617e+00	ci left: 1.367637e-06	ci right 8.111457e-06	k: 6	n:1610000
BTNL8   1610000 perm   1455 sec   (1107 perm/sec)   p_kst 3.726708e-06   p_cons 5.832050e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 1.237348e-02	ci left: 5.797906e-02	ci right 5.870153e-02	k: 94510	n:1620000
KS ci ratio: 1.481617e+00	ci left: 1.359195e-06	ci right 8.061386e-06	k: 6	n:1620000
BTNL8   1620000 perm   1471 sec   (1101 perm/sec)   p_kst 3.703704e-06   p_cons 5.833951e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 1.233604e-02	ci left: 5.797503e-02	ci right 5.869525e-02	k: 95085	n:1630000
KS ci ratio: 1.481617e+00	ci left: 1.350857e-06	ci right 8.011930e-06	k: 6	n:1630000
BTNL8   1630000 perm   1487 sec   (1096 perm/sec)   p_kst 3.680982e-06   p_cons 5.833436e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 1.229977e-02	ci left: 5.796376e-02	ci right 5.868171e-02	k: 95648	n:1640000
KS ci ratio: 1.481617e+00	ci left: 1.342620e-06	ci right 7.963077e-06	k: 6	n:1640000
BTNL8   1640000 perm   1503 sec   (1091 perm/sec)   p_kst 3.658537e-06   p_cons 5.832195e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 1.226022e-02	ci left: 5.798465e-02	ci right 5.870053e-02	k: 96264	n:1650000
KS ci ratio: 1.481617e+00	ci left: 1.334482e-06	ci right 7.914816e-06	k: 6	n:1650000
BTNL8   1650000 perm   1520 sec   (1086 perm/sec)   p_kst 3.636364e-06   p_cons 5.834182e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 1.222159e-02	ci left: 5.800050e-02	ci right 5.871430e-02	k: 96872	n:1660000
KS ci ratio: 1.481617e+00	ci left: 1.326443e-06	ci right 7.867136e-06	k: 6	n:1660000
BTNL8   1660000 perm   1536 sec   (1081 perm/sec)   p_kst 3.614458e-06   p_cons 5.835663e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 1.218306e-02	ci left: 5.801854e-02	ci right 5.873030e-02	k: 97484	n:1670000
KS ci ratio: 1.481617e+00	ci left: 1.318501e-06	ci right 7.820028e-06	k: 6	n:1670000
BTNL8   1670000 perm   1552 sec   (1076 perm/sec)   p_kst 3.592814e-06   p_cons 5.837365e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 1.214278e-02	ci left: 5.805537e-02	ci right 5.876521e-02	k: 98128	n:1680000
KS ci ratio: 1.481617e+00	ci left: 1.310652e-06	ci right 7.773480e-06	k: 6	n:1680000
BTNL8   1680000 perm   1569 sec   (1071 perm/sec)   p_kst 3.571429e-06   p_cons 5.840952e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 1.210941e-02	ci left: 5.803276e-02	ci right 5.874036e-02	k: 98672	n:1690000
KS ci ratio: 1.481617e+00	ci left: 1.302897e-06	ci right 7.727483e-06	k: 6	n:1690000
BTNL8   1690000 perm   1586 sec   (1066 perm/sec)   p_kst 3.550296e-06   p_cons 5.838580e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 1.207490e-02	ci left: 5.802332e-02	ci right 5.872877e-02	k: 99238	n:1700000
KS ci ratio: 1.481617e+00	ci left: 1.295233e-06	ci right 7.682028e-06	k: 6	n:1700000
BTNL8   1700000 perm   1604 sec   (1060 perm/sec)   p_kst 3.529412e-06   p_cons 5.837529e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 1.203658e-02	ci left: 5.805132e-02	ci right 5.875486e-02	k: 99868	n:1710000
KS ci ratio: 1.481617e+00	ci left: 1.287659e-06	ci right 7.637104e-06	k: 6	n:1710000
BTNL8   1710000 perm   1622 sec   (1054 perm/sec)   p_kst 3.508772e-06   p_cons 5.840234e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 1.200103e-02	ci left: 5.805696e-02	ci right 5.875848e-02	k: 100460	n:1720000
KS ci ratio: 1.481617e+00	ci left: 1.280172e-06	ci right 7.592702e-06	k: 6	n:1720000
BTNL8   1720000 perm   1639 sec   (1050 perm/sec)   p_kst 3.488372e-06   p_cons 5.840698e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 1.196454e-02	ci left: 5.807407e-02	ci right 5.877365e-02	k: 101072	n:1730000
KS ci ratio: 1.481617e+00	ci left: 1.272772e-06	ci right 7.548814e-06	k: 6	n:1730000
BTNL8   1730000 perm   1656 sec   (1045 perm/sec)   p_kst 3.468208e-06   p_cons 5.842312e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 1.193156e-02	ci left: 5.806176e-02	ci right 5.875925e-02	k: 101633	n:1740000
KS ci ratio: 1.481617e+00	ci left: 1.265457e-06	ci right 7.505430e-06	k: 6	n:1740000
BTNL8   1740000 perm   1673 sec   (1040 perm/sec)   p_kst 3.448276e-06   p_cons 5.840977e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 1.189718e-02	ci left: 5.806498e-02	ci right 5.876048e-02	k: 102221	n:1750000
KS ci ratio: 1.481617e+00	ci left: 1.258226e-06	ci right 7.462542e-06	k: 6	n:1750000
BTNL8   1750000 perm   1691 sec   (1035 perm/sec)   p_kst 3.428571e-06   p_cons 5.841200e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 1.186451e-02	ci left: 5.805513e-02	ci right 5.874859e-02	k: 102786	n:1760000
KS ci ratio: 1.481617e+00	ci left: 1.251077e-06	ci right 7.420141e-06	k: 6	n:1760000
BTNL8   1760000 perm   1708 sec   (1030 perm/sec)   p_kst 3.409091e-06   p_cons 5.840114e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 1.182937e-02	ci left: 5.807075e-02	ci right 5.876233e-02	k: 103396	n:1770000
KS ci ratio: 1.481617e+00	ci left: 1.244009e-06	ci right 7.378219e-06	k: 6	n:1770000
BTNL8   1770000 perm   1726 sec   (1026 perm/sec)   p_kst 3.389831e-06   p_cons 5.841582e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 1.179580e-02	ci left: 5.807443e-02	ci right 5.876408e-02	k: 103985	n:1780000
KS ci ratio: 1.481617e+00	ci left: 1.237020e-06	ci right 7.336769e-06	k: 6	n:1780000
BTNL8   1780000 perm   1743 sec   (1021 perm/sec)   p_kst 3.370787e-06   p_cons 5.841854e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 1.176335e-02	ci left: 5.807028e-02	ci right 5.875797e-02	k: 104560	n:1790000
KS ci ratio: 1.481617e+00	ci left: 1.230109e-06	ci right 7.295781e-06	k: 6	n:1790000
BTNL8   1790000 perm   1761 sec   (1017 perm/sec)   p_kst 3.351955e-06   p_cons 5.841341e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 1.173052e-02	ci left: 5.807227e-02	ci right 5.875804e-02	k: 105146	n:1800000
KS ci ratio: 1.481617e+00	ci left: 1.223276e-06	ci right 7.255249e-06	k: 6	n:1800000
BTNL8   1800000 perm   1778 sec   (1012 perm/sec)   p_kst 3.333333e-06   p_cons 5.841444e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 1.169843e-02	ci left: 5.806983e-02	ci right 5.875369e-02	k: 105724	n:1810000
KS ci ratio: 1.481617e+00	ci left: 1.216517e-06	ci right 7.215165e-06	k: 6	n:1810000
BTNL8   1810000 perm   1796 sec   (1008 perm/sec)   p_kst 3.314917e-06   p_cons 5.841105e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 1.166760e-02	ci left: 5.805810e-02	ci right 5.874001e-02	k: 106285	n:1820000
KS ci ratio: 1.481617e+00	ci left: 1.209833e-06	ci right 7.175521e-06	k: 6	n:1820000
BTNL8   1820000 perm   1814 sec   (1004 perm/sec)   p_kst 3.296703e-06   p_cons 5.839835e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 1.163394e-02	ci left: 5.807539e-02	ci right 5.875552e-02	k: 106899	n:1830000
KS ci ratio: 1.481617e+00	ci left: 1.203222e-06	ci right 7.136311e-06	k: 6	n:1830000
BTNL8   1830000 perm   1831 sec   (999 perm/sec)   p_kst 3.278689e-06   p_cons 5.841475e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 1.160223e-02	ci left: 5.807677e-02	ci right 5.875505e-02	k: 107484	n:1840000
KS ci ratio: 1.481618e+00	ci left: 1.196683e-06	ci right 7.097527e-06	k: 6	n:1840000
BTNL8   1840000 perm   1850 sec   (995 perm/sec)   p_kst 3.260870e-06   p_cons 5.841522e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 1.157141e-02	ci left: 5.807221e-02	ci right 5.874863e-02	k: 108058	n:1850000
KS ci ratio: 1.481618e+00	ci left: 1.190214e-06	ci right 7.059162e-06	k: 6	n:1850000
BTNL8   1850000 perm   1868 sec   (990 perm/sec)   p_kst 3.243243e-06   p_cons 5.840973e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 1.154196e-02	ci left: 5.805698e-02	ci right 5.873149e-02	k: 108612	n:1860000
KS ci ratio: 1.481618e+00	ci left: 1.183815e-06	ci right 7.021209e-06	k: 6	n:1860000
BTNL8   1860000 perm   1886 sec   (986 perm/sec)   p_kst 3.225806e-06   p_cons 5.839355e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 1.150938e-02	ci left: 5.807392e-02	ci right 5.874670e-02	k: 109226	n:1870000
KS ci ratio: 1.481618e+00	ci left: 1.177484e-06	ci right 6.983663e-06	k: 6	n:1870000
BTNL8   1870000 perm   1904 sec   (982 perm/sec)   p_kst 3.208556e-06   p_cons 5.840963e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 1.147563e-02	ci left: 5.810447e-02	ci right 5.877562e-02	k: 109866	n:1880000
KS ci ratio: 1.481618e+00	ci left: 1.171221e-06	ci right 6.946516e-06	k: 6	n:1880000
BTNL8   1880000 perm   1922 sec   (978 perm/sec)   p_kst 3.191489e-06   p_cons 5.843936e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 1.144706e-02	ci left: 5.808773e-02	ci right 5.875701e-02	k: 110417	n:1890000
KS ci ratio: 1.481618e+00	ci left: 1.165024e-06	ci right 6.909762e-06	k: 6	n:1890000
BTNL8   1890000 perm   1941 sec   (974 perm/sec)   p_kst 3.174603e-06   p_cons 5.842169e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 1.141740e-02	ci left: 5.808377e-02	ci right 5.875126e-02	k: 110992	n:1900000
KS ci ratio: 1.481618e+00	ci left: 1.158893e-06	ci right 6.873395e-06	k: 6	n:1900000
BTNL8   1900000 perm   1959 sec   (970 perm/sec)   p_kst 3.157895e-06   p_cons 5.841684e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 1.138716e-02	ci left: 5.808769e-02	ci right 5.875344e-02	k: 111582	n:1910000
KS ci ratio: 1.481618e+00	ci left: 1.152825e-06	ci right 6.837408e-06	k: 6	n:1910000
BTNL8   1910000 perm   1978 sec   (966 perm/sec)   p_kst 3.141361e-06   p_cons 5.841990e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 1.135657e-02	ci left: 5.809728e-02	ci right 5.876134e-02	k: 112183	n:1920000
KS ci ratio: 1.481618e+00	ci left: 1.146821e-06	ci right 6.801797e-06	k: 6	n:1920000
BTNL8   1920000 perm   1997 sec   (962 perm/sec)   p_kst 3.125000e-06   p_cons 5.842865e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 1.132600e-02	ci left: 5.810884e-02	ci right 5.877124e-02	k: 112788	n:1930000
KS ci ratio: 1.481618e+00	ci left: 1.140879e-06	ci right 6.766554e-06	k: 6	n:1930000
BTNL8   1930000 perm   2016 sec   (957 perm/sec)   p_kst 3.108808e-06   p_cons 5.843938e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 1.129738e-02	ci left: 5.810384e-02	ci right 5.876449e-02	k: 113361	n:1940000
KS ci ratio: 1.481618e+00	ci left: 1.134998e-06	ci right 6.731675e-06	k: 6	n:1940000
BTNL8   1940000 perm   2035 sec   (953 perm/sec)   p_kst 3.092784e-06   p_cons 5.843351e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 1.126933e-02	ci left: 5.809531e-02	ci right 5.875421e-02	k: 113927	n:1950000
KS ci ratio: 1.481618e+00	ci left: 1.129177e-06	ci right 6.697154e-06	k: 6	n:1950000
BTNL8   1950000 perm   2054 sec   (949 perm/sec)   p_kst 3.076923e-06   p_cons 5.842410e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 1.124056e-02	ci left: 5.809602e-02	ci right 5.875324e-02	k: 114511	n:1960000
KS ci ratio: 1.481618e+00	ci left: 1.123416e-06	ci right 6.662985e-06	k: 6	n:1960000
BTNL8   1960000 perm   2073 sec   (945 perm/sec)   p_kst 3.061224e-06   p_cons 5.842398e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 1.121196e-02	ci left: 5.809724e-02	ci right 5.875279e-02	k: 115096	n:1970000
KS ci ratio: 1.481618e+00	ci left: 1.117714e-06	ci right 6.629163e-06	k: 6	n:1970000
BTNL8   1970000 perm   2092 sec   (942 perm/sec)   p_kst 3.045685e-06   p_cons 5.842437e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 1.118224e-02	ci left: 5.811154e-02	ci right 5.876551e-02	k: 115707	n:1980000
KS ci ratio: 1.481618e+00	ci left: 1.112069e-06	ci right 6.595682e-06	k: 6	n:1980000
BTNL8   1980000 perm   2112 sec   (938 perm/sec)   p_kst 3.030303e-06   p_cons 5.843788e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 1.115468e-02	ci left: 5.810666e-02	ci right 5.875895e-02	k: 116280	n:1990000
KS ci ratio: 1.481618e+00	ci left: 1.106480e-06	ci right 6.562538e-06	k: 6	n:1990000
BTNL8   1990000 perm   2131 sec   (934 perm/sec)   p_kst 3.015075e-06   p_cons 5.843216e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 1.112546e-02	ci left: 5.812028e-02	ci right 5.877100e-02	k: 116890	n:2000000
KS ci ratio: 1.481618e+00	ci left: 1.100948e-06	ci right 6.529725e-06	k: 6	n:2000000
BTNL8   2000000 perm   2151 sec   (930 perm/sec)   p_kst 3.000000e-06   p_cons 5.844500e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 1.109647e-02	ci left: 5.813377e-02	ci right 5.878293e-02	k: 117500	n:2010000
KS ci ratio: 1.481618e+00	ci left: 1.095471e-06	ci right 6.497239e-06	k: 6	n:2010000
BTNL8   2010000 perm   2171 sec   (926 perm/sec)   p_kst 2.985075e-06   p_cons 5.845771e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 1.106915e-02	ci left: 5.813280e-02	ci right 5.878035e-02	k: 118081	n:2020000
KS ci ratio: 1.481618e+00	ci left: 1.090047e-06	ci right 6.465075e-06	k: 6	n:2020000
BTNL8   2020000 perm   2190 sec   (922 perm/sec)   p_kst 2.970297e-06   p_cons 5.845594e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 1.104168e-02	ci left: 5.813529e-02	ci right 5.878124e-02	k: 118669	n:2030000
KS ci ratio: 1.481618e+00	ci left: 1.084678e-06	ci right 6.433227e-06	k: 6	n:2030000
BTNL8   2030000 perm   2210 sec   (918 perm/sec)   p_kst 2.955665e-06   p_cons 5.845764e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 1.101364e-02	ci left: 5.814558e-02	ci right 5.878999e-02	k: 119273	n:2040000
KS ci ratio: 1.481618e+00	ci left: 1.079361e-06	ci right 6.401692e-06	k: 6	n:2040000
BTNL8   2040000 perm   2230 sec   (915 perm/sec)   p_kst 2.941176e-06   p_cons 5.846716e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 1.098775e-02	ci left: 5.813630e-02	ci right 5.877909e-02	k: 119837	n:2050000
KS ci ratio: 1.481618e+00	ci left: 1.074095e-06	ci right 6.370464e-06	k: 6	n:2050000
BTNL8   2050000 perm   2250 sec   (911 perm/sec)   p_kst 2.926829e-06   p_cons 5.845707e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 1.096131e-02	ci left: 5.813438e-02	ci right 5.877560e-02	k: 120416	n:2060000
KS ci ratio: 1.481618e+00	ci left: 1.068881e-06	ci right 6.339540e-06	k: 6	n:2060000
BTNL8   2060000 perm   2270 sec   (908 perm/sec)   p_kst 2.912621e-06   p_cons 5.845437e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 1.093445e-02	ci left: 5.813875e-02	ci right 5.877843e-02	k: 121008	n:2070000
KS ci ratio: 1.481618e+00	ci left: 1.063718e-06	ci right 6.308914e-06	k: 6	n:2070000
BTNL8   2070000 perm   2289 sec   (904 perm/sec)   p_kst 2.898551e-06   p_cons 5.845797e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 1.090835e-02	ci left: 5.813732e-02	ci right 5.877545e-02	k: 121588	n:2080000
KS ci ratio: 1.481618e+00	ci left: 1.058604e-06	ci right 6.278583e-06	k: 6	n:2080000
BTNL8   2080000 perm   2309 sec   (901 perm/sec)   p_kst 2.884615e-06   p_cons 5.845577e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 1.088239e-02	ci left: 5.813638e-02	ci right 5.877297e-02	k: 122169	n:2090000
KS ci ratio: 1.481618e+00	ci left: 1.053539e-06	ci right 6.248542e-06	k: 6	n:2090000
BTNL8   2090000 perm   2329 sec   (897 perm/sec)   p_kst 2.870813e-06   p_cons 5.845407e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 1.085540e-02	ci left: 5.814781e-02	ci right 5.878293e-02	k: 122776	n:2100000
KS ci ratio: 1.481618e+00	ci left: 1.048522e-06	ci right 6.218787e-06	k: 6	n:2100000
BTNL8   2100000 perm   2349 sec   (894 perm/sec)   p_kst 2.857143e-06   p_cons 5.846476e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 1.083037e-02	ci left: 5.814116e-02	ci right 5.877474e-02	k: 123345	n:2110000
KS ci ratio: 1.481618e+00	ci left: 1.043552e-06	ci right 6.189314e-06	k: 6	n:2110000
BTNL8   2110000 perm   2370 sec   (890 perm/sec)   p_kst 2.843602e-06   p_cons 5.845735e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 1.080654e-02	ci left: 5.812423e-02	ci right 5.875622e-02	k: 123892	n:2120000
KS ci ratio: 1.481618e+00	ci left: 1.038630e-06	ci right 6.160119e-06	k: 6	n:2120000
BTNL8   2120000 perm   2391 sec   (887 perm/sec)   p_kst 2.830189e-06   p_cons 5.843962e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 1.078235e-02	ci left: 5.811261e-02	ci right 5.874305e-02	k: 124450	n:2130000
KS ci ratio: 1.481618e+00	ci left: 1.033754e-06	ci right 6.131198e-06	k: 6	n:2130000
BTNL8   2130000 perm   2412 sec   (883 perm/sec)   p_kst 2.816901e-06   p_cons 5.842723e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 1.075829e-02	ci left: 5.810156e-02	ci right 5.873047e-02	k: 125009	n:2140000
KS ci ratio: 1.481618e+00	ci left: 1.028923e-06	ci right 6.102548e-06	k: 6	n:2140000
BTNL8   2140000 perm   2433 sec   (880 perm/sec)   p_kst 2.803738e-06   p_cons 5.841542e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 1.073325e-02	ci left: 5.810222e-02	ci right 5.872967e-02	k: 125593	n:2150000
KS ci ratio: 1.481618e+00	ci left: 1.024138e-06	ci right 6.074164e-06	k: 6	n:2150000
BTNL8   2150000 perm   2453 sec   (876 perm/sec)   p_kst 2.790698e-06   p_cons 5.841535e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 1.070658e-02	ci left: 5.812135e-02	ci right 5.874743e-02	k: 126217	n:2160000
KS ci ratio: 1.481618e+00	ci left: 1.019396e-06	ci right 6.046043e-06	k: 6	n:2160000
BTNL8   2160000 perm   2474 sec   (873 perm/sec)   p_kst 2.777778e-06   p_cons 5.843380e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 1.068212e-02	ci left: 5.811961e-02	ci right 5.874424e-02	k: 126796	n:2170000
KS ci ratio: 1.481618e+00	ci left: 1.014698e-06	ci right 6.018181e-06	k: 6	n:2170000
BTNL8   2170000 perm   2495 sec   (870 perm/sec)   p_kst 2.764977e-06   p_cons 5.843134e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 1.065654e-02	ci left: 5.813117e-02	ci right 5.875441e-02	k: 127404	n:2180000
KS ci ratio: 1.481618e+00	ci left: 1.010044e-06	ci right 5.990575e-06	k: 6	n:2180000
BTNL8   2180000 perm   2516 sec   (866 perm/sec)   p_kst 2.752294e-06   p_cons 5.844220e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 1.063132e-02	ci left: 5.814080e-02	ci right 5.876266e-02	k: 128008	n:2190000
KS ci ratio: 1.481618e+00	ci left: 1.005432e-06	ci right 5.963221e-06	k: 6	n:2190000
BTNL8   2190000 perm   2537 sec   (863 perm/sec)   p_kst 2.739726e-06   p_cons 5.845114e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 1.060601e-02	ci left: 5.815306e-02	ci right 5.877356e-02	k: 128618	n:2200000
KS ci ratio: 1.481618e+00	ci left: 1.000862e-06	ci right 5.936115e-06	k: 6	n:2200000
BTNL8   2200000 perm   2558 sec   (860 perm/sec)   p_kst 2.727273e-06   p_cons 5.846273e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 1.058189e-02	ci left: 5.815483e-02	ci right 5.877393e-02	k: 129205	n:2210000
KS ci ratio: 1.481618e+00	ci left: 9.963329e-07	ci right 5.909255e-06	k: 6	n:2210000
BTNL8   2210000 perm   2579 sec   (857 perm/sec)   p_kst 2.714932e-06   p_cons 5.846380e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 1.055905e-02	ci left: 5.814490e-02	ci right 5.876256e-02	k: 129766	n:2220000
KS ci ratio: 1.481618e+00	ci left: 9.918449e-07	ci right 5.882637e-06	k: 6	n:2220000
BTNL8   2220000 perm   2600 sec   (854 perm/sec)   p_kst 2.702703e-06   p_cons 5.845315e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 1.053670e-02	ci left: 5.813149e-02	ci right 5.874768e-02	k: 130319	n:2230000
KS ci ratio: 1.481618e+00	ci left: 9.873971e-07	ci right 5.856257e-06	k: 6	n:2230000
BTNL8   2230000 perm   2621 sec   (851 perm/sec)   p_kst 2.690583e-06   p_cons 5.843901e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 1.051343e-02	ci left: 5.812933e-02	ci right 5.874413e-02	k: 130897	n:2240000
KS ci ratio: 1.481618e+00	ci left: 9.829891e-07	ci right 5.830113e-06	k: 6	n:2240000
BTNL8   2240000 perm   2643 sec   (848 perm/sec)   p_kst 2.678571e-06   p_cons 5.843616e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 1.049005e-02	ci left: 5.812985e-02	ci right 5.874328e-02	k: 131481	n:2250000
KS ci ratio: 1.481618e+00	ci left: 9.786203e-07	ci right 5.804202e-06	k: 6	n:2250000
BTNL8   2250000 perm   2664 sec   (844 perm/sec)   p_kst 2.666667e-06   p_cons 5.843600e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 1.046675e-02	ci left: 5.813125e-02	ci right 5.874333e-02	k: 132067	n:2260000
KS ci ratio: 1.481618e+00	ci left: 9.742901e-07	ci right 5.778519e-06	k: 6	n:2260000
BTNL8   2260000 perm   2686 sec   (841 perm/sec)   p_kst 2.654867e-06   p_cons 5.843673e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 1.044473e-02	ci left: 5.812078e-02	ci right 5.873145e-02	k: 132626	n:2270000
KS ci ratio: 1.481618e+00	ci left: 9.699981e-07	ci right 5.753063e-06	k: 6	n:2270000
BTNL8   2270000 perm   2707 sec   (838 perm/sec)   p_kst 2.643172e-06   p_cons 5.842555e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 1.042210e-02	ci left: 5.811827e-02	ci right 5.872759e-02	k: 133203	n:2280000
KS ci ratio: 1.481618e+00	ci left: 9.657437e-07	ci right 5.727831e-06	k: 6	n:2280000
BTNL8   2280000 perm   2729 sec   (835 perm/sec)   p_kst 2.631579e-06   p_cons 5.842237e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 1.039917e-02	ci left: 5.812058e-02	ci right 5.872857e-02	k: 133791	n:2290000
KS ci ratio: 1.481618e+00	ci left: 9.615265e-07	ci right 5.702818e-06	k: 6	n:2290000
BTNL8   2290000 perm   2750 sec   (833 perm/sec)   p_kst 2.620087e-06   p_cons 5.842402e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 1.037659e-02	ci left: 5.812070e-02	ci right 5.872737e-02	k: 134374	n:2300000
KS ci ratio: 1.481618e+00	ci left: 9.573459e-07	ci right 5.678023e-06	k: 6	n:2300000
BTNL8   2300000 perm   2772 sec   (830 perm/sec)   p_kst 2.608696e-06   p_cons 5.842348e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 1.035395e-02	ci left: 5.812298e-02	ci right 5.872834e-02	k: 134962	n:2310000
KS ci ratio: 1.481618e+00	ci left: 9.532016e-07	ci right 5.653443e-06	k: 6	n:2310000
BTNL8   2310000 perm   2795 sec   (827 perm/sec)   p_kst 2.597403e-06   p_cons 5.842511e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 1.033041e-02	ci left: 5.813643e-02	ci right 5.874054e-02	k: 135576	n:2320000
KS ci ratio: 1.481618e+00	ci left: 9.490929e-07	ci right 5.629075e-06	k: 6	n:2320000
BTNL8   2320000 perm   2817 sec   (824 perm/sec)   p_kst 2.586207e-06   p_cons 5.843793e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 1.030759e-02	ci left: 5.814376e-02	ci right 5.874661e-02	k: 136176	n:2330000
KS ci ratio: 1.481618e+00	ci left: 9.450196e-07	ci right 5.604916e-06	k: 6	n:2330000
BTNL8   2330000 perm   2839 sec   (821 perm/sec)   p_kst 2.575107e-06   p_cons 5.844464e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 1.028687e-02	ci left: 5.813015e-02	ci right 5.873163e-02	k: 136727	n:2340000
KS ci ratio: 1.481618e+00	ci left: 9.409810e-07	ci right 5.580963e-06	k: 6	n:2340000
BTNL8   2340000 perm   2861 sec   (818 perm/sec)   p_kst 2.564103e-06   p_cons 5.843034e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 1.026430e-02	ci left: 5.813787e-02	ci right 5.873811e-02	k: 137328	n:2350000
KS ci ratio: 1.481618e+00	ci left: 9.369768e-07	ci right 5.557215e-06	k: 6	n:2350000
BTNL8   2350000 perm   2884 sec   (815 perm/sec)   p_kst 2.553191e-06   p_cons 5.843745e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 1.024188e-02	ci left: 5.814554e-02	ci right 5.874453e-02	k: 137929	n:2360000
KS ci ratio: 1.481618e+00	ci left: 9.330066e-07	ci right 5.533667e-06	k: 6	n:2360000
BTNL8   2360000 perm   2906 sec   (812 perm/sec)   p_kst 2.542373e-06   p_cons 5.844449e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 1.022038e-02	ci left: 5.814472e-02	ci right 5.874244e-02	k: 138510	n:2370000
KS ci ratio: 1.481618e+00	ci left: 9.290699e-07	ci right 5.510318e-06	k: 6	n:2370000
BTNL8   2370000 perm   2929 sec   (809 perm/sec)   p_kst 2.531646e-06   p_cons 5.844304e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 1.019836e-02	ci left: 5.815103e-02	ci right 5.874752e-02	k: 139108	n:2380000
KS ci ratio: 1.481618e+00	ci left: 9.251662e-07	ci right 5.487166e-06	k: 6	n:2380000
BTNL8   2380000 perm   2951 sec   (806 perm/sec)   p_kst 2.521008e-06   p_cons 5.844874e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 1.017625e-02	ci left: 5.815980e-02	ci right 5.875508e-02	k: 139712	n:2390000
KS ci ratio: 1.481618e+00	ci left: 9.212952e-07	ci right 5.464207e-06	k: 6	n:2390000
BTNL8   2390000 perm   2973 sec   (804 perm/sec)   p_kst 2.510460e-06   p_cons 5.845690e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 1.015547e-02	ci left: 5.815561e-02	ci right 5.874962e-02	k: 140285	n:2400000
KS ci ratio: 1.481618e+00	ci left: 9.174565e-07	ci right 5.441440e-06	k: 6	n:2400000
BTNL8   2400000 perm   2996 sec   (801 perm/sec)   p_kst 2.500000e-06   p_cons 5.845208e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 1.013371e-02	ci left: 5.816346e-02	ci right 5.875628e-02	k: 140887	n:2410000
KS ci ratio: 1.481618e+00	ci left: 9.136496e-07	ci right 5.418861e-06	k: 6	n:2410000
BTNL8   2410000 perm   3019 sec   (798 perm/sec)   p_kst 2.489627e-06   p_cons 5.845934e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 1.011346e-02	ci left: 5.815640e-02	ci right 5.874796e-02	k: 141453	n:2420000
KS ci ratio: 1.481618e+00	ci left: 9.098742e-07	ci right 5.396469e-06	k: 6	n:2420000
BTNL8   2420000 perm   3042 sec   (796 perm/sec)   p_kst 2.479339e-06   p_cons 5.845165e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 1.009159e-02	ci left: 5.816830e-02	ci right 5.875868e-02	k: 142065	n:2430000
KS ci ratio: 1.481618e+00	ci left: 9.061298e-07	ci right 5.374261e-06	k: 6	n:2430000
BTNL8   2430000 perm   3065 sec   (793 perm/sec)   p_kst 2.469136e-06   p_cons 5.846296e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 1.007114e-02	ci left: 5.816619e-02	ci right 5.875535e-02	k: 142643	n:2440000
KS ci ratio: 1.481618e+00	ci left: 9.024162e-07	ci right 5.352236e-06	k: 6	n:2440000
BTNL8   2440000 perm   3088 sec   (790 perm/sec)   p_kst 2.459016e-06   p_cons 5.846025e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 1.005040e-02	ci left: 5.816858e-02	ci right 5.875655e-02	k: 143232	n:2450000
KS ci ratio: 1.481618e+00	ci left: 8.987329e-07	ci right 5.330390e-06	k: 6	n:2450000
BTNL8   2450000 perm   3112 sec   (787 perm/sec)   p_kst 2.448980e-06   p_cons 5.846204e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 1.002916e-02	ci left: 5.817785e-02	ci right 5.876466e-02	k: 143838	n:2460000
KS ci ratio: 1.481618e+00	ci left: 8.950795e-07	ci right 5.308722e-06	k: 6	n:2460000
BTNL8   2460000 perm   3136 sec   (784 perm/sec)   p_kst 2.439024e-06   p_cons 5.847073e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 1.000901e-02	ci left: 5.817654e-02	ci right 5.876215e-02	k: 144418	n:2470000
KS ci ratio: 1.481618e+00	ci left: 8.914557e-07	ci right 5.287229e-06	k: 6	n:2470000
BTNL8   2470000 perm   3160 sec   (782 perm/sec)   p_kst 2.429150e-06   p_cons 5.846883e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 9.988688e-03	ci left: 5.817846e-02	ci right 5.876289e-02	k: 145006	n:2480000
KS ci ratio: 1.481618e+00	ci left: 8.878611e-07	ci right 5.265909e-06	k: 6	n:2480000
BTNL8   2480000 perm   3184 sec   (779 perm/sec)   p_kst 2.419355e-06   p_cons 5.847016e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 9.967545e-03	ci left: 5.819078e-02	ci right 5.877410e-02	k: 145620	n:2490000
KS ci ratio: 1.481618e+00	ci left: 8.842954e-07	ci right 5.244761e-06	k: 6	n:2490000
BTNL8   2490000 perm   3208 sec   (776 perm/sec)   p_kst 2.409639e-06   p_cons 5.848193e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 9.947837e-03	ci left: 5.818864e-02	ci right 5.877078e-02	k: 146198	n:2500000
KS ci ratio: 1.481618e+00	ci left: 8.807582e-07	ci right 5.223782e-06	k: 6	n:2500000
BTNL8   2500000 perm   3232 sec   (774 perm/sec)   p_kst 2.400000e-06   p_cons 5.847920e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 9.926916e-03	ci left: 5.820123e-02	ci right 5.878226e-02	k: 146813	n:2510000
KS ci ratio: 1.481618e+00	ci left: 8.772492e-07	ci right 5.202970e-06	k: 6	n:2510000
BTNL8   2510000 perm   3256 sec   (771 perm/sec)   p_kst 2.390438e-06   p_cons 5.849124e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 9.906912e-03	ci left: 5.820501e-02	ci right 5.878490e-02	k: 147406	n:2520000
KS ci ratio: 1.481618e+00	ci left: 8.737680e-07	ci right 5.182324e-06	k: 6	n:2520000
BTNL8   2520000 perm   3280 sec   (768 perm/sec)   p_kst 2.380952e-06   p_cons 5.849444e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 9.888554e-03	ci left: 5.819180e-02	ci right 5.877048e-02	k: 147956	n:2530000
KS ci ratio: 1.481618e+00	ci left: 8.703144e-07	ci right 5.161840e-06	k: 6	n:2530000
BTNL8   2530000 perm   3304 sec   (766 perm/sec)   p_kst 2.371542e-06   p_cons 5.848063e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 9.869521e-03	ci left: 5.818734e-02	ci right 5.876485e-02	k: 148528	n:2540000
KS ci ratio: 1.481618e+00	ci left: 8.668880e-07	ci right 5.141518e-06	k: 6	n:2540000
BTNL8   2540000 perm   3328 sec   (763 perm/sec)   p_kst 2.362205e-06   p_cons 5.847559e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 9.850106e-03	ci left: 5.818839e-02	ci right 5.876477e-02	k: 149114	n:2550000
KS ci ratio: 1.481618e+00	ci left: 8.634884e-07	ci right 5.121355e-06	k: 6	n:2550000
BTNL8   2550000 perm   3352 sec   (761 perm/sec)   p_kst 2.352941e-06   p_cons 5.847608e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 9.830562e-03	ci left: 5.819216e-02	ci right 5.876743e-02	k: 149707	n:2560000
KS ci ratio: 1.481618e+00	ci left: 8.601154e-07	ci right 5.101350e-06	k: 6	n:2560000
BTNL8   2560000 perm   3377 sec   (758 perm/sec)   p_kst 2.343750e-06   p_cons 5.847930e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 9.811480e-03	ci left: 5.819203e-02	ci right 5.876617e-02	k: 150290	n:2570000
KS ci ratio: 1.481618e+00	ci left: 8.567687e-07	ci right 5.081500e-06	k: 6	n:2570000
BTNL8   2570000 perm   3402 sec   (756 perm/sec)   p_kst 2.334630e-06   p_cons 5.847860e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 9.792095e-03	ci left: 5.819653e-02	ci right 5.876958e-02	k: 150885	n:2580000
KS ci ratio: 1.481618e+00	ci left: 8.534478e-07	ci right 5.061805e-06	k: 6	n:2580000
BTNL8   2580000 perm   3426 sec   (753 perm/sec)   p_kst 2.325581e-06   p_cons 5.848256e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 9.773064e-03	ci left: 5.819831e-02	ci right 5.877025e-02	k: 151473	n:2590000
KS ci ratio: 1.481618e+00	ci left: 8.501527e-07	ci right 5.042261e-06	k: 6	n:2590000
BTNL8   2590000 perm   3451 sec   (751 perm/sec)   p_kst 2.316602e-06   p_cons 5.848378e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 9.753327e-03	ci left: 5.820928e-02	ci right 5.878017e-02	k: 152085	n:2600000
KS ci ratio: 1.481618e+00	ci left: 8.468829e-07	ci right 5.022868e-06	k: 6	n:2600000
BTNL8   2600000 perm   3476 sec   (748 perm/sec)   p_kst 2.307692e-06   p_cons 5.849423e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 9.734081e-03	ci left: 5.821596e-02	ci right 5.878578e-02	k: 152686	n:2610000
KS ci ratio: 1.481618e+00	ci left: 8.436381e-07	ci right 5.003623e-06	k: 6	n:2610000
BTNL8   2610000 perm   3500 sec   (746 perm/sec)   p_kst 2.298851e-06   p_cons 5.850038e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 9.713972e-03	ci left: 5.823364e-02	ci right 5.880245e-02	k: 153316	n:2620000
KS ci ratio: 1.385927e+00	ci left: 1.074185e-06	ci right 5.504830e-06	k: 7	n:2620000
BTNL8   2620000 perm   3525 sec   (743 perm/sec)   p_kst 2.671756e-06   p_cons 5.851756e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 9.695794e-03	ci left: 5.823070e-02	ci right 5.879841e-02	k: 153892	n:2630000
KS ci ratio: 1.385927e+00	ci left: 1.070101e-06	ci right 5.483899e-06	k: 7	n:2630000
BTNL8   2630000 perm   3550 sec   (741 perm/sec)   p_kst 2.661597e-06   p_cons 5.851407e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 9.678383e-03	ci left: 5.822022e-02	ci right 5.878681e-02	k: 154448	n:2640000
KS ci ratio: 1.385927e+00	ci left: 1.066047e-06	ci right 5.463127e-06	k: 7	n:2640000
BTNL8   2640000 perm   3575 sec   (738 perm/sec)   p_kst 2.651515e-06   p_cons 5.850303e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 9.661298e-03	ci left: 5.820719e-02	ci right 5.877264e-02	k: 154997	n:2650000
KS ci ratio: 1.385927e+00	ci left: 1.062024e-06	ci right 5.442511e-06	k: 7	n:2650000
BTNL8   2650000 perm   3600 sec   (736 perm/sec)   p_kst 2.641509e-06   p_cons 5.848943e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 9.643413e-03	ci left: 5.820438e-02	ci right 5.876876e-02	k: 155573	n:2660000
KS ci ratio: 1.385927e+00	ci left: 1.058032e-06	ci right 5.422051e-06	k: 7	n:2660000
BTNL8   2660000 perm   3625 sec   (734 perm/sec)   p_kst 2.631579e-06   p_cons 5.848609e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 9.625758e-03	ci left: 5.820011e-02	ci right 5.876340e-02	k: 156145	n:2670000
KS ci ratio: 1.385927e+00	ci left: 1.054069e-06	ci right 5.401744e-06	k: 7	n:2670000
BTNL8   2670000 perm   3651 sec   (731 perm/sec)   p_kst 2.621723e-06   p_cons 5.848127e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 9.607973e-03	ci left: 5.819847e-02	ci right 5.876070e-02	k: 156724	n:2680000
KS ci ratio: 1.385927e+00	ci left: 1.050136e-06	ci right 5.381588e-06	k: 7	n:2680000
BTNL8   2680000 perm   3676 sec   (729 perm/sec)   p_kst 2.611940e-06   p_cons 5.847910e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 9.589896e-03	ci left: 5.820129e-02	ci right 5.876249e-02	k: 157315	n:2690000
KS ci ratio: 1.385927e+00	ci left: 1.046232e-06	ci right 5.361582e-06	k: 7	n:2690000
BTNL8   2690000 perm   3702 sec   (727 perm/sec)   p_kst 2.602230e-06   p_cons 5.848141e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 8.996531e-03	ci left: 6.540143e-02	ci right 6.599283e-02	k: 177381	n:2700000
KS ci ratio: 1.385927e+00	ci left: 1.042357e-06	ci right 5.341724e-06	k: 7	n:2700000
BTNL8   2700000 perm   3727 sec   (724 perm/sec)   p_kst 2.592593e-06   p_cons 6.569667e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 8.980078e-03	ci left: 6.539978e-02	ci right 6.599008e-02	k: 178032	n:2710000
KS ci ratio: 1.385927e+00	ci left: 1.038511e-06	ci right 5.322013e-06	k: 7	n:2710000
BTNL8   2710000 perm   3753 sec   (722 perm/sec)   p_kst 2.583026e-06   p_cons 6.569446e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 8.963339e-03	ci left: 6.540328e-02	ci right 6.599250e-02	k: 178697	n:2720000
KS ci ratio: 1.385927e+00	ci left: 1.034693e-06	ci right 5.302447e-06	k: 7	n:2720000
BTNL8   2720000 perm   3779 sec   (720 perm/sec)   p_kst 2.573529e-06   p_cons 6.569743e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 8.945653e-03	ci left: 6.542100e-02	ci right 6.600922e-02	k: 179401	n:2730000
KS ci ratio: 1.385927e+00	ci left: 1.030903e-06	ci right 5.283024e-06	k: 7	n:2730000
BTNL8   2730000 perm   3804 sec   (718 perm/sec)   p_kst 2.564103e-06   p_cons 6.571465e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 8.930459e-03	ci left: 6.540583e-02	ci right 6.599290e-02	k: 180015	n:2740000
KS ci ratio: 1.385927e+00	ci left: 1.027140e-06	ci right 5.263743e-06	k: 7	n:2740000
BTNL8   2740000 perm   3830 sec   (715 perm/sec)   p_kst 2.554745e-06   p_cons 6.569891e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 8.913072e-03	ci left: 6.542197e-02	ci right 6.600804e-02	k: 180715	n:2750000
KS ci ratio: 1.385927e+00	ci left: 1.023405e-06	ci right 5.244602e-06	k: 7	n:2750000
BTNL8   2750000 perm   3856 sec   (713 perm/sec)   p_kst 2.545455e-06   p_cons 6.571455e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 8.896442e-03	ci left: 6.542895e-02	ci right 6.601399e-02	k: 181390	n:2760000
KS ci ratio: 1.385927e+00	ci left: 1.019697e-06	ci right 5.225600e-06	k: 7	n:2760000
BTNL8   2760000 perm   3882 sec   (711 perm/sec)   p_kst 2.536232e-06   p_cons 6.572101e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 8.880322e-03	ci left: 6.543012e-02	ci right 6.601411e-02	k: 182049	n:2770000
KS ci ratio: 1.385927e+00	ci left: 1.016016e-06	ci right 5.206735e-06	k: 7	n:2770000
BTNL8   2770000 perm   3908 sec   (709 perm/sec)   p_kst 2.527076e-06   p_cons 6.572166e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 8.864445e-03	ci left: 6.542913e-02	ci right 6.601206e-02	k: 182702	n:2780000
KS ci ratio: 1.385927e+00	ci left: 1.012361e-06	ci right 5.188006e-06	k: 7	n:2780000
BTNL8   2780000 perm   3935 sec   (707 perm/sec)   p_kst 2.517986e-06   p_cons 6.572014e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 8.847621e-03	ci left: 6.544246e-02	ci right 6.602439e-02	k: 183395	n:2790000
KS ci ratio: 1.385927e+00	ci left: 1.008733e-06	ci right 5.169411e-06	k: 7	n:2790000
BTNL8   2790000 perm   3961 sec   (704 perm/sec)   p_kst 2.508961e-06   p_cons 6.573297e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 8.832715e-03	ci left: 6.543039e-02	ci right 6.601123e-02	k: 184017	n:2800000
KS ci ratio: 1.385927e+00	ci left: 1.005130e-06	ci right 5.150949e-06	k: 7	n:2800000
BTNL8   2800000 perm   3987 sec   (702 perm/sec)   p_kst 2.500000e-06   p_cons 6.572036e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 8.817577e-03	ci left: 6.542266e-02	ci right 6.600243e-02	k: 184651	n:2810000
KS ci ratio: 1.385927e+00	ci left: 1.001553e-06	ci right 5.132618e-06	k: 7	n:2810000
BTNL8   2810000 perm   4014 sec   (700 perm/sec)   p_kst 2.491103e-06   p_cons 6.571210e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 8.800713e-03	ci left: 6.544012e-02	ci right 6.601893e-02	k: 185356	n:2820000
KS ci ratio: 1.385927e+00	ci left: 9.980016e-07	ci right 5.114417e-06	k: 7	n:2820000
BTNL8   2820000 perm   4041 sec   (698 perm/sec)   p_kst 2.482270e-06   p_cons 6.572908e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 8.784551e-03	ci left: 6.544899e-02	ci right 6.602681e-02	k: 186037	n:2830000
KS ci ratio: 1.385927e+00	ci left: 9.944751e-07	ci right 5.096345e-06	k: 7	n:2830000
BTNL8   2830000 perm   4067 sec   (696 perm/sec)   p_kst 2.473498e-06   p_cons 6.573746e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 8.768905e-03	ci left: 6.545183e-02	ci right 6.602864e-02	k: 186701	n:2840000
KS ci ratio: 1.385927e+00	ci left: 9.909735e-07	ci right 5.078400e-06	k: 7	n:2840000
BTNL8   2840000 perm   4094 sec   (694 perm/sec)   p_kst 2.464789e-06   p_cons 6.573979e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 8.753517e-03	ci left: 6.545219e-02	ci right 6.602799e-02	k: 187358	n:2850000
KS ci ratio: 1.385927e+00	ci left: 9.874964e-07	ci right 5.060581e-06	k: 7	n:2850000
BTNL8   2850000 perm   4121 sec   (692 perm/sec)   p_kst 2.456140e-06   p_cons 6.573965e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 8.737166e-03	ci left: 6.546721e-02	ci right 6.604206e-02	k: 188057	n:2860000
KS ci ratio: 1.385927e+00	ci left: 9.840436e-07	ci right 5.042887e-06	k: 7	n:2860000
BTNL8   2860000 perm   4148 sec   (690 perm/sec)   p_kst 2.447552e-06   p_cons 6.575420e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 8.722538e-03	ci left: 6.545918e-02	ci right 6.603299e-02	k: 188690	n:2870000
KS ci ratio: 1.385927e+00	ci left: 9.806148e-07	ci right 5.025316e-06	k: 7	n:2870000
BTNL8   2870000 perm   4174 sec   (688 perm/sec)   p_kst 2.439024e-06   p_cons 6.574564e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 8.707984e-03	ci left: 6.545120e-02	ci right 6.602398e-02	k: 189323	n:2880000
KS ci ratio: 1.385927e+00	ci left: 9.772099e-07	ci right 5.007867e-06	k: 7	n:2880000
BTNL8   2880000 perm   4202 sec   (685 perm/sec)   p_kst 2.430556e-06   p_cons 6.573715e-02   p_joint 0

Joint ci ratio: 1.047661e+00	ci left: 2.395141e-06	ci right 7.692166e-06	k: 13	n:2890000
Cons ci ratio: 8.693257e-03	ci left: 6.544673e-02	ci right 6.601850e-02	k: 189966	n:2890000
KS ci ratio: 1.306664e+00	ci left: 1.195098e-06	ci right 5.454383e-06	k: 8	n:2890000
BTNL8   2890000 perm   4229 sec   (683 perm/sec)   p_kst 2.768166e-06   p_cons 6.573218e-02   p_joint 4.498270e-06

Joint ci ratio: 1.047661e+00	ci left: 2.386882e-06	ci right 7.665642e-06	k: 13	n:2900000
Cons ci ratio: 8.678459e-03	ci left: 6.544436e-02	ci right 6.601513e-02	k: 190615	n:2900000
KS ci ratio: 1.306664e+00	ci left: 1.190977e-06	ci right 5.435575e-06	k: 8	n:2900000
BTNL8   2900000 perm   4257 sec   (681 perm/sec)   p_kst 2.758621e-06   p_cons 6.572931e-02   p_joint 4.482759e-06

Joint ci ratio: 1.047661e+00	ci left: 2.378680e-06	ci right 7.639299e-06	k: 13	n:2910000
Cons ci ratio: 8.662984e-03	ci left: 6.545264e-02	ci right 6.602245e-02	k: 191295	n:2910000
KS ci ratio: 1.306664e+00	ci left: 1.186885e-06	ci right 5.416896e-06	k: 8	n:2910000
BTNL8   2910000 perm   4284 sec   (679 perm/sec)   p_kst 2.749141e-06   p_cons 6.573711e-02   p_joint 4.467354e-06

Joint ci ratio: 1.047661e+00	ci left: 2.370534e-06	ci right 7.613137e-06	k: 13	n:2920000
Cons ci ratio: 8.648219e-03	ci left: 6.545197e-02	ci right 6.602081e-02	k: 191949	n:2920000
KS ci ratio: 1.306664e+00	ci left: 1.182820e-06	ci right 5.398345e-06	k: 8	n:2920000
BTNL8   2920000 perm   4312 sec   (677 perm/sec)   p_kst 2.739726e-06   p_cons 6.573596e-02   p_joint 4.452055e-06

Joint ci ratio: 1.047661e+00	ci left: 2.362443e-06	ci right 7.587154e-06	k: 13	n:2930000
Cons ci ratio: 8.634801e-03	ci left: 6.543326e-02	ci right 6.600104e-02	k: 192550	n:2930000
KS ci ratio: 1.306664e+00	ci left: 1.178783e-06	ci right 5.379921e-06	k: 8	n:2930000
BTNL8   2930000 perm   4339 sec   (675 perm/sec)   p_kst 2.730375e-06   p_cons 6.571672e-02   p_joint 4.436860e-06

Joint ci ratio: 1.047661e+00	ci left: 2.354408e-06	ci right 7.561347e-06	k: 13	n:2940000
Cons ci ratio: 8.620012e-03	ci left: 6.543504e-02	ci right 6.600187e-02	k: 193211	n:2940000
KS ci ratio: 1.306664e+00	ci left: 1.174774e-06	ci right 5.361622e-06	k: 8	n:2940000
BTNL8   2940000 perm   4367 sec   (673 perm/sec)   p_kst 2.721088e-06   p_cons 6.571803e-02   p_joint 4.421769e-06

Joint ci ratio: 1.047661e+00	ci left: 2.346427e-06	ci right 7.535716e-06	k: 13	n:2950000
Cons ci ratio: 8.604182e-03	ci left: 6.545272e-02	ci right 6.601864e-02	k: 193919	n:2950000
KS ci ratio: 1.306664e+00	ci left: 1.170791e-06	ci right 5.343447e-06	k: 8	n:2950000
BTNL8   2950000 perm   4395 sec   (671 perm/sec)   p_kst 2.711864e-06   p_cons 6.573525e-02   p_joint 4.406780e-06

Joint ci ratio: 1.012137e+00	ci left: 2.585790e-06	ci right 7.935670e-06	k: 14	n:2960000
Cons ci ratio: 8.588936e-03	ci left: 6.546319e-02	ci right 6.602820e-02	k: 194606	n:2960000
KS ci ratio: 1.239611e+00	ci left: 1.390330e-06	ci right 5.771885e-06	k: 9	n:2960000
BTNL8   2960000 perm   4423 sec   (669 perm/sec)   p_kst 3.040541e-06   p_cons 6.574527e-02   p_joint 4.729730e-06

Joint ci ratio: 1.012137e+00	ci left: 2.577083e-06	ci right 7.908951e-06	k: 14	n:2970000
Cons ci ratio: 8.574498e-03	ci left: 6.546318e-02	ci right 6.602723e-02	k: 195262	n:2970000
KS ci ratio: 1.239611e+00	ci left: 1.385648e-06	ci right 5.752451e-06	k: 9	n:2970000
BTNL8   2970000 perm   4451 sec   (667 perm/sec)   p_kst 3.030303e-06   p_cons 6.574478e-02   p_joint 4.713805e-06

Joint ci ratio: 1.012137e+00	ci left: 2.568435e-06	ci right 7.882411e-06	k: 14	n:2980000
Cons ci ratio: 8.560741e-03	ci left: 6.545446e-02	ci right 6.601753e-02	k: 195892	n:2980000
KS ci ratio: 1.239611e+00	ci left: 1.380999e-06	ci right 5.733148e-06	k: 9	n:2980000
BTNL8   2980000 perm   4479 sec   (665 perm/sec)   p_kst 3.020134e-06   p_cons 6.573557e-02   p_joint 4.697987e-06

Joint ci ratio: 1.012137e+00	ci left: 2.559845e-06	ci right 7.856048e-06	k: 14	n:2990000
Cons ci ratio: 8.547097e-03	ci left: 6.544513e-02	ci right 6.600722e-02	k: 196520	n:2990000
KS ci ratio: 1.239611e+00	ci left: 1.376380e-06	ci right 5.713973e-06	k: 9	n:2990000
BTNL8   2990000 perm   4507 sec   (663 perm/sec)   p_kst 3.010033e-06   p_cons 6.572575e-02   p_joint 4.682274e-06

Joint ci ratio: 1.012137e+00	ci left: 2.551312e-06	ci right 7.829861e-06	k: 14	n:3000000
Cons ci ratio: 8.532661e-03	ci left: 6.544817e-02	ci right 6.600933e-02	k: 197185	n:3000000
KS ci ratio: 1.239611e+00	ci left: 1.371792e-06	ci right 5.694927e-06	k: 9	n:3000000
BTNL8   3000000 perm   4535 sec   (662 perm/sec)   p_kst 3.000000e-06   p_cons 6.572833e-02   p_joint 4.666667e-06

Joint ci ratio: 1.012137e+00	ci left: 2.542836e-06	ci right 7.803849e-06	k: 14	n:3010000
Cons ci ratio: 8.518390e-03	ci left: 6.544987e-02	ci right 6.601010e-02	k: 197846	n:3010000
KS ci ratio: 1.239611e+00	ci left: 1.367234e-06	ci right 5.676007e-06	k: 9	n:3010000
BTNL8   3010000 perm   4563 sec   (660 perm/sec)   p_kst 2.990033e-06   p_cons 6.572957e-02   p_joint 4.651163e-06

Joint ci ratio: 1.012137e+00	ci left: 2.534416e-06	ci right 7.778008e-06	k: 14	n:3020000
Cons ci ratio: 8.505680e-03	ci left: 6.543008e-02	ci right 6.598930e-02	k: 198442	n:3020000
KS ci ratio: 1.239611e+00	ci left: 1.362707e-06	ci right 5.657212e-06	k: 9	n:3020000
BTNL8   3020000 perm   4591 sec   (658 perm/sec)   p_kst 2.980132e-06   p_cons 6.570927e-02   p_joint 4.635762e-06

Joint ci ratio: 1.012137e+00	ci left: 2.526052e-06	ci right 7.752338e-06	k: 14	n:3030000
Cons ci ratio: 8.492069e-03	ci left: 6.542425e-02	ci right 6.598252e-02	k: 199080	n:3030000
KS ci ratio: 1.181922e+00	ci left: 1.582638e-06	ci right 6.069416e-06	k: 10	n:3030000
BTNL8   3030000 perm   4619 sec   (656 perm/sec)   p_kst 3.300330e-06   p_cons 6.570297e-02   p_joint 4.620462e-06

Joint ci ratio: 1.012137e+00	ci left: 2.517742e-06	ci right 7.726837e-06	k: 14	n:3040000
Cons ci ratio: 8.478704e-03	ci left: 6.541583e-02	ci right 6.597315e-02	k: 199710	n:3040000
KS ci ratio: 1.181922e+00	ci left: 1.577432e-06	ci right 6.049451e-06	k: 10	n:3040000
BTNL8   3040000 perm   4648 sec   (654 perm/sec)   p_kst 3.289474e-06   p_cons 6.569408e-02   p_joint 4.605263e-06

Joint ci ratio: 1.012137e+00	ci left: 2.509488e-06	ci right 7.701503e-06	k: 14	n:3050000
Cons ci ratio: 8.465448e-03	ci left: 6.540682e-02	ci right 6.596319e-02	k: 200338	n:3050000
KS ci ratio: 1.181922e+00	ci left: 1.572260e-06	ci right 6.029617e-06	k: 10	n:3050000
BTNL8   3050000 perm   4677 sec   (652 perm/sec)   p_kst 3.278689e-06   p_cons 6.568459e-02   p_joint 4.590164e-06

Joint ci ratio: 1.012137e+00	ci left: 2.501287e-06	ci right 7.676335e-06	k: 14	n:3060000
Cons ci ratio: 8.452433e-03	ci left: 6.539525e-02	ci right 6.595067e-02	k: 200958	n:3060000
KS ci ratio: 1.181922e+00	ci left: 1.567122e-06	ci right 6.009912e-06	k: 10	n:3060000
BTNL8   3060000 perm   4705 sec   (650 perm/sec)   p_kst 3.267974e-06   p_cons 6.567255e-02   p_joint 4.575163e-06

Joint ci ratio: 1.012137e+00	ci left: 2.493139e-06	ci right 7.651331e-06	k: 14	n:3070000
Cons ci ratio: 8.438515e-03	ci left: 6.539775e-02	ci right 6.595226e-02	k: 201621	n:3070000
KS ci ratio: 1.181922e+00	ci left: 1.562017e-06	ci right 5.990336e-06	k: 10	n:3070000
BTNL8   3070000 perm   4734 sec   (648 perm/sec)   p_kst 3.257329e-06   p_cons 6.567459e-02   p_joint 4.560261e-06

Joint ci ratio: 1.012137e+00	ci left: 2.485044e-06	ci right 7.626489e-06	k: 14	n:3080000
Cons ci ratio: 8.424510e-03	ci left: 6.540249e-02	ci right 6.595612e-02	k: 202291	n:3080000
KS ci ratio: 1.181922e+00	ci left: 1.556945e-06	ci right 5.970887e-06	k: 10	n:3080000
BTNL8   3080000 perm   4763 sec   (647 perm/sec)   p_kst 3.246753e-06   p_cons 6.567890e-02   p_joint 4.545455e-06

Joint ci ratio: 1.012137e+00	ci left: 2.477002e-06	ci right 7.601807e-06	k: 14	n:3090000
Cons ci ratio: 8.410641e-03	ci left: 6.540624e-02	ci right 6.595898e-02	k: 202958	n:3090000
KS ci ratio: 1.181922e+00	ci left: 1.551907e-06	ci right 5.951563e-06	k: 10	n:3090000
BTNL8   3090000 perm   4792 sec   (645 perm/sec)   p_kst 3.236246e-06   p_cons 6.568220e-02   p_joint 4.530744e-06

Joint ci ratio: 1.012137e+00	ci left: 2.469012e-06	ci right 7.577286e-06	k: 14	n:3100000
Cons ci ratio: 8.397745e-03	ci left: 6.539676e-02	ci right 6.594857e-02	k: 203584	n:3100000
KS ci ratio: 1.181922e+00	ci left: 1.546901e-06	ci right 5.932365e-06	k: 10	n:3100000
BTNL8   3100000 perm   4821 sec   (643 perm/sec)   p_kst 3.225806e-06   p_cons 6.567226e-02   p_joint 4.516129e-06

Joint ci ratio: 1.012137e+00	ci left: 2.461073e-06	ci right 7.552921e-06	k: 14	n:3110000
Cons ci ratio: 8.385215e-03	ci left: 6.538285e-02	ci right 6.593372e-02	k: 204196	n:3110000
KS ci ratio: 1.181922e+00	ci left: 1.541927e-06	ci right 5.913290e-06	k: 10	n:3110000
BTNL8   3110000 perm   4850 sec   (641 perm/sec)   p_kst 3.215434e-06   p_cons 6.565788e-02   p_joint 4.501608e-06

Joint ci ratio: 1.012137e+00	ci left: 2.453185e-06	ci right 7.528713e-06	k: 14	n:3120000
Cons ci ratio: 8.371911e-03	ci left: 6.538118e-02	ci right 6.593116e-02	k: 204846	n:3120000
KS ci ratio: 1.181922e+00	ci left: 1.536985e-06	ci right 5.894337e-06	k: 10	n:3120000
BTNL8   3120000 perm   4879 sec   (639 perm/sec)   p_kst 3.205128e-06   p_cons 6.565577e-02   p_joint 4.487179e-06

Joint ci ratio: 1.012137e+00	ci left: 2.445347e-06	ci right 7.504660e-06	k: 14	n:3130000
Cons ci ratio: 8.358604e-03	ci left: 6.538049e-02	ci right 6.592958e-02	k: 205499	n:3130000
KS ci ratio: 1.181922e+00	ci left: 1.532074e-06	ci right 5.875505e-06	k: 10	n:3130000
BTNL8   3130000 perm   4908 sec   (638 perm/sec)   p_kst 3.194888e-06   p_cons 6.565463e-02   p_joint 4.472843e-06

Joint ci ratio: 1.012137e+00	ci left: 2.437559e-06	ci right 7.480760e-06	k: 14	n:3140000
Cons ci ratio: 8.344797e-03	ci left: 6.538806e-02	ci right 6.593631e-02	k: 206178	n:3140000
KS ci ratio: 1.181922e+00	ci left: 1.527195e-06	ci right 5.856793e-06	k: 10	n:3140000
BTNL8   3140000 perm   4938 sec   (636 perm/sec)   p_kst 3.184713e-06   p_cons 6.566178e-02   p_joint 4.458599e-06

Joint ci ratio: 1.012137e+00	ci left: 2.429821e-06	ci right 7.457011e-06	k: 14	n:3150000
Cons ci ratio: 8.331533e-03	ci left: 6.538862e-02	ci right 6.593599e-02	k: 206835	n:3150000
KS ci ratio: 1.181922e+00	ci left: 1.522347e-06	ci right 5.838200e-06	k: 10	n:3150000
BTNL8   3150000 perm   4967 sec   (634 perm/sec)   p_kst 3.174603e-06   p_cons 6.566190e-02   p_joint 4.444444e-06

Joint ci ratio: 1.012137e+00	ci left: 2.422132e-06	ci right 7.433413e-06	k: 14	n:3160000
Cons ci ratio: 8.318825e-03	ci left: 6.538191e-02	ci right 6.592838e-02	k: 207469	n:3160000
KS ci ratio: 1.181922e+00	ci left: 1.517529e-06	ci right 5.819725e-06	k: 10	n:3160000
BTNL8   3160000 perm   4997 sec   (632 perm/sec)   p_kst 3.164557e-06   p_cons 6.565475e-02   p_joint 4.430380e-06

Joint ci ratio: 1.012137e+00	ci left: 2.414491e-06	ci right 7.409964e-06	k: 14	n:3170000
Cons ci ratio: 8.304723e-03	ci left: 6.539665e-02	ci right 6.594232e-02	k: 208171	n:3170000
KS ci ratio: 1.181922e+00	ci left: 1.512742e-06	ci right 5.801366e-06	k: 10	n:3170000
BTNL8   3170000 perm   5026 sec   (631 perm/sec)   p_kst 3.154574e-06   p_cons 6.566909e-02   p_joint 4.416404e-06

Joint ci ratio: 1.012137e+00	ci left: 2.406898e-06	ci right 7.386662e-06	k: 14	n:3180000
Cons ci ratio: 8.291457e-03	ci left: 6.540000e-02	ci right 6.594482e-02	k: 208837	n:3180000
KS ci ratio: 1.181922e+00	ci left: 1.507985e-06	ci right 5.783123e-06	k: 10	n:3180000
BTNL8   3180000 perm   5056 sec   (629 perm/sec)   p_kst 3.144654e-06   p_cons 6.567201e-02   p_joint 4.402516e-06

Joint ci ratio: 1.012137e+00	ci left: 2.399353e-06	ci right 7.363507e-06	k: 14	n:3190000
Cons ci ratio: 8.279270e-03	ci left: 6.538831e-02	ci right 6.593223e-02	k: 209455	n:3190000
KS ci ratio: 1.181922e+00	ci left: 1.503258e-06	ci right 5.764994e-06	k: 10	n:3190000
BTNL8   3190000 perm   5085 sec   (627 perm/sec)   p_kst 3.134796e-06   p_cons 6.565987e-02   p_joint 4.388715e-06

Joint ci ratio: 1.012137e+00	ci left: 2.391855e-06	ci right 7.340496e-06	k: 14	n:3200000
Cons ci ratio: 8.266525e-03	ci left: 6.538574e-02	ci right 6.592880e-02	k: 210102	n:3200000
KS ci ratio: 1.181922e+00	ci left: 1.498560e-06	ci right 5.746979e-06	k: 10	n:3200000
BTNL8   3200000 perm   5115 sec   (626 perm/sec)   p_kst 3.125000e-06   p_cons 6.565688e-02   p_joint 4.375000e-06

Joint ci ratio: 1.012137e+00	ci left: 2.384404e-06	ci right 7.317628e-06	k: 14	n:3210000
Cons ci ratio: 8.253463e-03	ci left: 6.538878e-02	ci right 6.593100e-02	k: 210767	n:3210000
KS ci ratio: 1.181922e+00	ci left: 1.493892e-06	ci right 5.729075e-06	k: 10	n:3210000
BTNL8   3210000 perm   5146 sec   (624 perm/sec)   p_kst 3.115265e-06   p_cons 6.565950e-02   p_joint 4.361371e-06

Joint ci ratio: 9.799974e-01	ci left: 2.607265e-06	ci right 7.683286e-06	k: 15	n:3220000
Cons ci ratio: 8.240962e-03	ci left: 6.538437e-02	ci right 6.592573e-02	k: 211408	n:3220000
KS ci ratio: 1.181922e+00	ci left: 1.489252e-06	ci right 5.711283e-06	k: 10	n:3220000
BTNL8   3220000 perm   5176 sec   (622 perm/sec)   p_kst 3.105590e-06   p_cons 6.565466e-02   p_joint 4.658385e-06

Joint ci ratio: 9.799974e-01	ci left: 2.599193e-06	ci right 7.659499e-06	k: 15	n:3230000
Cons ci ratio: 8.228809e-03	ci left: 6.537566e-02	ci right 6.591614e-02	k: 212035	n:3230000
KS ci ratio: 1.181922e+00	ci left: 1.484641e-06	ci right 5.693601e-06	k: 10	n:3230000
BTNL8   3230000 perm   5207 sec   (620 perm/sec)   p_kst 3.095975e-06   p_cons 6.564551e-02   p_joint 4.643963e-06

Joint ci ratio: 9.507370e-01	ci left: 2.822651e-06	ci right 8.019431e-06	k: 16	n:3240000
Cons ci ratio: 8.216709e-03	ci left: 6.536700e-02	ci right 6.590662e-02	k: 212662	n:3240000
KS ci ratio: 1.131604e+00	ci left: 1.694804e-06	ci right 6.074695e-06	k: 11	n:3240000
BTNL8   3240000 perm   5237 sec   (619 perm/sec)   p_kst 3.395062e-06   p_cons 6.563642e-02   p_joint 4.938272e-06

Joint ci ratio: 9.507370e-01	ci left: 2.813966e-06	ci right 7.994756e-06	k: 16	n:3250000
Cons ci ratio: 8.203778e-03	ci left: 6.537160e-02	ci right 6.591040e-02	k: 213332	n:3250000
KS ci ratio: 1.131604e+00	ci left: 1.689589e-06	ci right 6.056004e-06	k: 11	n:3250000
BTNL8   3250000 perm   5267 sec   (617 perm/sec)   p_kst 3.384615e-06   p_cons 6.564062e-02   p_joint 4.923077e-06

Joint ci ratio: 9.507370e-01	ci left: 2.805335e-06	ci right 7.970232e-06	k: 16	n:3260000
Cons ci ratio: 8.191133e-03	ci left: 6.537281e-02	ci right 6.591078e-02	k: 213991	n:3260000
KS ci ratio: 1.131604e+00	ci left: 1.684406e-06	ci right 6.037427e-06	k: 11	n:3260000
BTNL8   3260000 perm   5298 sec   (615 perm/sec)   p_kst 3.374233e-06   p_cons 6.564141e-02   p_joint 4.907975e-06

Joint ci ratio: 9.507370e-01	ci left: 2.796756e-06	ci right 7.945859e-06	k: 16	n:3270000
Cons ci ratio: 8.179076e-03	ci left: 6.536607e-02	ci right 6.590320e-02	k: 214624	n:3270000
KS ci ratio: 1.131604e+00	ci left: 1.679255e-06	ci right 6.018964e-06	k: 11	n:3270000
BTNL8   3270000 perm   5328 sec   (614 perm/sec)   p_kst 3.363914e-06   p_cons 6.563425e-02   p_joint 4.892966e-06

Joint ci ratio: 9.507370e-01	ci left: 2.788229e-06	ci right 7.921634e-06	k: 16	n:3280000
Cons ci ratio: 8.167681e-03	ci left: 6.535025e-02	ci right 6.588649e-02	k: 215227	n:3280000
KS ci ratio: 1.131604e+00	ci left: 1.674135e-06	ci right 6.000614e-06	k: 11	n:3280000
BTNL8   3280000 perm   5360 sec   (612 perm/sec)   p_kst 3.353659e-06   p_cons 6.561799e-02   p_joint 4.878049e-06

Joint ci ratio: 9.507370e-01	ci left: 2.779754e-06	ci right 7.897556e-06	k: 16	n:3290000
Cons ci ratio: 8.155020e-03	ci left: 6.535424e-02	ci right 6.588968e-02	k: 215895	n:3290000
KS ci ratio: 1.131604e+00	ci left: 1.669047e-06	ci right 5.982375e-06	k: 11	n:3290000
BTNL8   3290000 perm   5391 sec   (610 perm/sec)   p_kst 3.343465e-06   p_cons 6.562158e-02   p_joint 4.863222e-06

Joint ci ratio: 9.507371e-01	ci left: 2.771330e-06	ci right 7.873624e-06	k: 16	n:3300000
Cons ci ratio: 8.142438e-03	ci left: 6.535791e-02	ci right 6.589255e-02	k: 216562	n:3300000
KS ci ratio: 1.131604e+00	ci left: 1.663989e-06	ci right 5.964246e-06	k: 11	n:3300000
BTNL8   3300000 perm   5422 sec   (609 perm/sec)   p_kst 3.333333e-06   p_cons 6.562485e-02   p_joint 4.848485e-06

Joint ci ratio: 9.507371e-01	ci left: 2.762958e-06	ci right 7.849836e-06	k: 16	n:3310000
Cons ci ratio: 8.129613e-03	ci left: 6.536608e-02	ci right 6.589994e-02	k: 217244	n:3310000
KS ci ratio: 1.131604e+00	ci left: 1.658962e-06	ci right 5.946227e-06	k: 11	n:3310000
BTNL8   3310000 perm   5452 sec   (607 perm/sec)   p_kst 3.323263e-06   p_cons 6.563263e-02   p_joint 4.833837e-06

Joint ci ratio: 9.507371e-01	ci left: 2.754636e-06	ci right 7.826192e-06	k: 16	n:3320000
Cons ci ratio: 8.116829e-03	ci left: 6.537450e-02	ci right 6.590759e-02	k: 217927	n:3320000
KS ci ratio: 1.131604e+00	ci left: 1.653965e-06	ci right 5.928317e-06	k: 11	n:3320000
BTNL8   3320000 perm   5483 sec   (605 perm/sec)   p_kst 3.313253e-06   p_cons 6.564066e-02   p_joint 4.819277e-06

Joint ci ratio: 9.507371e-01	ci left: 2.746364e-06	ci right 7.802690e-06	k: 16	n:3330000
Cons ci ratio: 8.105434e-03	ci left: 6.536279e-02	ci right 6.589503e-02	k: 218543	n:3330000
KS ci ratio: 1.131604e+00	ci left: 1.648998e-06	ci right 5.910514e-06	k: 11	n:3330000
BTNL8   3330000 perm   5514 sec   (604 perm/sec)   p_kst 3.303303e-06   p_cons 6.562853e-02   p_joint 4.804805e-06

Joint ci ratio: 9.507371e-01	ci left: 2.738141e-06	ci right 7.779329e-06	k: 16	n:3340000
Cons ci ratio: 8.092586e-03	ci left: 6.537386e-02	ci right 6.590534e-02	k: 219235	n:3340000
KS ci ratio: 1.131604e+00	ci left: 1.644061e-06	ci right 5.892818e-06	k: 11	n:3340000
BTNL8   3340000 perm   5546 sec   (602 perm/sec)   p_kst 3.293413e-06   p_cons 6.563922e-02   p_joint 4.790419e-06

Joint ci ratio: 9.799975e-01	ci left: 2.506088e-06	ci right 7.385129e-06	k: 15	n:3350000
Cons ci ratio: 8.079896e-03	ci left: 6.538337e-02	ci right 6.591409e-02	k: 219922	n:3350000
KS ci ratio: 1.131604e+00	ci left: 1.639153e-06	ci right 5.875228e-06	k: 11	n:3350000
BTNL8   3350000 perm   5577 sec   (601 perm/sec)   p_kst 3.283582e-06   p_cons 6.564836e-02   p_joint 4.477612e-06

Joint ci ratio: 9.799975e-01	ci left: 2.498629e-06	ci right 7.363150e-06	k: 15	n:3360000
Cons ci ratio: 8.068108e-03	ci left: 6.538006e-02	ci right 6.590998e-02	k: 220566	n:3360000
KS ci ratio: 1.131604e+00	ci left: 1.634275e-06	ci right 5.857742e-06	k: 11	n:3360000
BTNL8   3360000 perm   5608 sec   (599 perm/sec)   p_kst 3.273810e-06   p_cons 6.564464e-02   p_joint 4.464286e-06

Joint ci ratio: 9.799975e-01	ci left: 2.491215e-06	ci right 7.341301e-06	k: 15	n:3370000
Cons ci ratio: 8.056177e-03	ci left: 6.537973e-02	ci right 6.590885e-02	k: 221220	n:3370000
KS ci ratio: 1.131604e+00	ci left: 1.629426e-06	ci right 5.840360e-06	k: 11	n:3370000
BTNL8   3370000 perm   5640 sec   (598 perm/sec)   p_kst 3.264095e-06   p_cons 6.564392e-02   p_joint 4.451039e-06

Joint ci ratio: 9.799975e-01	ci left: 2.483844e-06	ci right 7.319581e-06	k: 15	n:3380000
Cons ci ratio: 8.043793e-03	ci left: 6.538707e-02	ci right 6.591544e-02	k: 221900	n:3380000
KS ci ratio: 1.131604e+00	ci left: 1.624605e-06	ci right 5.823081e-06	k: 11	n:3380000
BTNL8   3380000 perm   5671 sec   (596 perm/sec)   p_kst 3.254438e-06   p_cons 6.565089e-02   p_joint 4.437870e-06

Joint ci ratio: 9.799975e-01	ci left: 2.476517e-06	ci right 7.297989e-06	k: 15	n:3390000
Cons ci ratio: 8.031950e-03	ci left: 6.538702e-02	ci right 6.591461e-02	k: 222555	n:3390000
KS ci ratio: 1.131604e+00	ci left: 1.619812e-06	ci right 5.805904e-06	k: 11	n:3390000
BTNL8   3390000 perm   5702 sec   (594 perm/sec)   p_kst 3.244838e-06   p_cons 6.565044e-02   p_joint 4.424779e-06

Joint ci ratio: 9.799975e-01	ci left: 2.469233e-06	ci right 7.276525e-06	k: 15	n:3400000
Cons ci ratio: 8.019793e-03	ci left: 6.539254e-02	ci right 6.591937e-02	k: 223229	n:3400000
KS ci ratio: 1.131604e+00	ci left: 1.615048e-06	ci right 5.788827e-06	k: 11	n:3400000
BTNL8   3400000 perm   5733 sec   (593 perm/sec)   p_kst 3.235294e-06   p_cons 6.565559e-02   p_joint 4.411765e-06

Joint ci ratio: 9.799976e-01	ci left: 2.461992e-06	ci right 7.255186e-06	k: 15	n:3410000
Cons ci ratio: 8.007232e-03	ci left: 6.540506e-02	ci right 6.593116e-02	k: 223927	n:3410000
KS ci ratio: 1.131604e+00	ci left: 1.610312e-06	ci right 5.771851e-06	k: 11	n:3410000
BTNL8   3410000 perm   5765 sec   (591 perm/sec)   p_kst 3.225806e-06   p_cons 6.566774e-02   p_joint 4.398827e-06

Joint ci ratio: 9.799976e-01	ci left: 2.454793e-06	ci right 7.233972e-06	k: 15	n:3420000
Cons ci ratio: 7.995568e-03	ci left: 6.540466e-02	ci right 6.592999e-02	k: 224581	n:3420000
KS ci ratio: 1.131604e+00	ci left: 1.605604e-06	ci right 5.754975e-06	k: 11	n:3420000
BTNL8   3420000 perm   5796 sec   (590 perm/sec)   p_kst 3.216374e-06   p_cons 6.566696e-02   p_joint 4.385965e-06

Joint ci ratio: 9.799976e-01	ci left: 2.447636e-06	ci right 7.212882e-06	k: 15	n:3430000
Cons ci ratio: 7.983670e-03	ci left: 6.540863e-02	ci right 6.593321e-02	k: 225250	n:3430000
KS ci ratio: 1.131604e+00	ci left: 1.600922e-06	ci right 5.738196e-06	k: 11	n:3430000
BTNL8   3430000 perm   5828 sec   (589 perm/sec)   p_kst 3.206997e-06   p_cons 6.567055e-02   p_joint 4.373178e-06

Joint ci ratio: 9.799976e-01	ci left: 2.440521e-06	ci right 7.191914e-06	k: 15	n:3440000
Cons ci ratio: 7.972524e-03	ci left: 6.540185e-02	ci right 6.592563e-02	k: 225882	n:3440000
KS ci ratio: 1.131604e+00	ci left: 1.596269e-06	ci right 5.721516e-06	k: 11	n:3440000
BTNL8   3440000 perm   5860 sec   (587 perm/sec)   p_kst 3.197674e-06   p_cons 6.566337e-02   p_joint 4.360465e-06

Joint ci ratio: 9.799976e-01	ci left: 2.433447e-06	ci right 7.171068e-06	k: 15	n:3450000
Cons ci ratio: 7.961086e-03	ci left: 6.540030e-02	ci right 6.592332e-02	k: 226532	n:3450000
KS ci ratio: 1.131604e+00	ci left: 1.591642e-06	ci right 5.704932e-06	k: 11	n:3450000
BTNL8   3450000 perm   5892 sec   (586 perm/sec)   p_kst 3.188406e-06   p_cons 6.566145e-02   p_joint 4.347826e-06

Joint ci ratio: 9.799976e-01	ci left: 2.426414e-06	ci right 7.150342e-06	k: 15	n:3460000
Cons ci ratio: 7.949829e-03	ci left: 6.539675e-02	ci right 6.591900e-02	k: 227175	n:3460000
KS ci ratio: 1.131604e+00	ci left: 1.587042e-06	ci right 5.688443e-06	k: 11	n:3460000
BTNL8   3460000 perm   5924 sec   (584 perm/sec)   p_kst 3.179191e-06   p_cons 6.565751e-02   p_joint 4.335260e-06

Joint ci ratio: 9.799976e-01	ci left: 2.419422e-06	ci right 7.129736e-06	k: 15	n:3470000
Cons ci ratio: 7.938730e-03	ci left: 6.539150e-02	ci right 6.591297e-02	k: 227812	n:3470000
KS ci ratio: 1.131604e+00	ci left: 1.582468e-06	ci right 5.672050e-06	k: 11	n:3470000
BTNL8   3470000 perm   5956 sec   (583 perm/sec)   p_kst 3.170029e-06   p_cons 6.565187e-02   p_joint 4.322767e-06

Joint ci ratio: 9.799976e-01	ci left: 2.412469e-06	ci right 7.109248e-06	k: 15	n:3480000
Cons ci ratio: 7.926936e-03	ci left: 6.539775e-02	ci right 6.591849e-02	k: 228489	n:3480000
KS ci ratio: 1.131604e+00	ci left: 1.577921e-06	ci right 5.655751e-06	k: 11	n:3480000
BTNL8   3480000 perm   5988 sec   (581 perm/sec)   p_kst 3.160920e-06   p_cons 6.565776e-02   p_joint 4.310345e-06

Joint ci ratio: 9.799976e-01	ci left: 2.405557e-06	ci right 7.088878e-06	k: 15	n:3490000
Cons ci ratio: 7.916118e-03	ci left: 6.538966e-02	ci right 6.590963e-02	k: 229116	n:3490000
KS ci ratio: 1.131604e+00	ci left: 1.573399e-06	ci right 5.639546e-06	k: 11	n:3490000
BTNL8   3490000 perm   6021 sec   (580 perm/sec)   p_kst 3.151862e-06   p_cons 6.564928e-02   p_joint 4.297994e-06

Joint ci ratio: 9.799976e-01	ci left: 2.398684e-06	ci right 7.068624e-06	k: 15	n:3500000
Cons ci ratio: 7.904442e-03	ci left: 6.539560e-02	ci right 6.591484e-02	k: 229792	n:3500000
KS ci ratio: 1.131604e+00	ci left: 1.568904e-06	ci right 5.623433e-06	k: 11	n:3500000
BTNL8   3500000 perm   6054 sec   (578 perm/sec)   p_kst 3.142857e-06   p_cons 6.565486e-02   p_joint 4.285714e-06

Joint ci ratio: 9.799976e-01	ci left: 2.391850e-06	ci right 7.048486e-06	k: 15	n:3510000
Cons ci ratio: 7.893239e-03	ci left: 6.539496e-02	ci right 6.591345e-02	k: 230445	n:3510000
KS ci ratio: 1.131604e+00	ci left: 1.564434e-06	ci right 5.607411e-06	k: 11	n:3510000
BTNL8   3510000 perm   6086 sec   (577 perm/sec)   p_kst 3.133903e-06   p_cons 6.565385e-02   p_joint 4.273504e-06

Joint ci ratio: 9.507372e-01	ci left: 2.598122e-06	ci right 7.381523e-06	k: 16	n:3520000
Cons ci ratio: 7.881956e-03	ci left: 6.539630e-02	ci right 6.591407e-02	k: 231105	n:3520000
KS ci ratio: 1.131604e+00	ci left: 1.559990e-06	ci right 5.591481e-06	k: 11	n:3520000
BTNL8   3520000 perm   6119 sec   (575 perm/sec)   p_kst 3.125000e-06   p_cons 6.565483e-02   p_joint 4.545455e-06

Joint ci ratio: 9.507372e-01	ci left: 2.590762e-06	ci right 7.360612e-06	k: 16	n:3530000
Cons ci ratio: 7.870194e-03	ci left: 6.540585e-02	ci right 6.592291e-02	k: 231794	n:3530000
KS ci ratio: 1.131604e+00	ci left: 1.555571e-06	ci right 5.575641e-06	k: 11	n:3530000
BTNL8   3530000 perm   6152 sec   (574 perm/sec)   p_kst 3.116147e-06   p_cons 6.566402e-02   p_joint 4.532578e-06

Joint ci ratio: 9.507372e-01	ci left: 2.583444e-06	ci right 7.339819e-06	k: 16	n:3540000
Cons ci ratio: 7.858413e-03	ci left: 6.541646e-02	ci right 6.593283e-02	k: 232487	n:3540000
KS ci ratio: 1.131604e+00	ci left: 1.551176e-06	ci right 5.559891e-06	k: 11	n:3540000
BTNL8   3540000 perm   6184 sec   (572 perm/sec)   p_kst 3.107345e-06   p_cons 6.567429e-02   p_joint 4.519774e-06

Joint ci ratio: 9.507372e-01	ci left: 2.576166e-06	ci right 7.319144e-06	k: 16	n:3550000
Cons ci ratio: 7.846972e-03	ci left: 6.542252e-02	ci right 6.593819e-02	k: 233164	n:3550000
KS ci ratio: 1.131604e+00	ci left: 1.546807e-06	ci right 5.544229e-06	k: 11	n:3550000
BTNL8   3550000 perm   6217 sec   (571 perm/sec)   p_kst 3.098592e-06   p_cons 6.568000e-02   p_joint 4.507042e-06

Joint ci ratio: 9.507372e-01	ci left: 2.568930e-06	ci right 7.298585e-06	k: 16	n:3560000
Cons ci ratio: 7.835742e-03	ci left: 6.542602e-02	ci right 6.594097e-02	k: 233832	n:3560000
KS ci ratio: 1.131604e+00	ci left: 1.542462e-06	ci right 5.528656e-06	k: 11	n:3560000
BTNL8   3560000 perm   6251 sec   (570 perm/sec)   p_kst 3.089888e-06   p_cons 6.568315e-02   p_joint 4.494382e-06

Joint ci ratio: 9.507373e-01	ci left: 2.561734e-06	ci right 7.278140e-06	k: 16	n:3570000
Cons ci ratio: 7.824936e-03	ci left: 6.542364e-02	ci right 6.593785e-02	k: 234479	n:3570000
KS ci ratio: 1.131604e+00	ci left: 1.538141e-06	ci right 5.513169e-06	k: 11	n:3570000
BTNL8   3570000 perm   6285 sec   (568 perm/sec)   p_kst 3.081232e-06   p_cons 6.568039e-02   p_joint 4.481793e-06

Joint ci ratio: 9.507373e-01	ci left: 2.554578e-06	ci right 7.257810e-06	k: 16	n:3580000
Cons ci ratio: 7.813836e-03	ci left: 6.542656e-02	ci right 6.594007e-02	k: 235145	n:3580000
KS ci ratio: 1.131604e+00	ci left: 1.533845e-06	ci right 5.497769e-06	k: 11	n:3580000
BTNL8   3580000 perm   6318 sec   (567 perm/sec)   p_kst 3.072626e-06   p_cons 6.568296e-02   p_joint 4.469274e-06

Joint ci ratio: 9.507373e-01	ci left: 2.547462e-06	ci right 7.237594e-06	k: 16	n:3590000
Cons ci ratio: 7.802783e-03	ci left: 6.542947e-02	ci right 6.594227e-02	k: 235811	n:3590000
KS ci ratio: 1.131604e+00	ci left: 1.529572e-06	ci right 5.482455e-06	k: 11	n:3590000
BTNL8   3590000 perm   6351 sec   (565 perm/sec)   p_kst 3.064067e-06   p_cons 6.568552e-02   p_joint 4.456825e-06

Joint ci ratio: 9.507373e-01	ci left: 2.540386e-06	ci right 7.217489e-06	k: 16	n:3600000
Cons ci ratio: 7.792236e-03	ci left: 6.542515e-02	ci right 6.593722e-02	k: 236451	n:3600000
KS ci ratio: 1.131604e+00	ci left: 1.525323e-06	ci right 5.467226e-06	k: 11	n:3600000
BTNL8   3600000 perm   6385 sec   (564 perm/sec)   p_kst 3.055556e-06   p_cons 6.568083e-02   p_joint 4.444444e-06

Joint ci ratio: 9.507373e-01	ci left: 2.533349e-06	ci right 7.197496e-06	k: 16	n:3610000
Cons ci ratio: 7.781011e-03	ci left: 6.543219e-02	ci right 6.594358e-02	k: 237132	n:3610000
KS ci ratio: 1.131604e+00	ci left: 1.521098e-06	ci right 5.452082e-06	k: 11	n:3610000
BTNL8   3610000 perm   6418 sec   (562 perm/sec)   p_kst 3.047091e-06   p_cons 6.568753e-02   p_joint 4.432133e-06

Joint ci ratio: 9.507373e-01	ci left: 2.526351e-06	ci right 7.177614e-06	k: 16	n:3620000
Cons ci ratio: 7.770342e-03	ci left: 6.543120e-02	ci right 6.594187e-02	k: 237784	n:3620000
KS ci ratio: 1.131604e+00	ci left: 1.516896e-06	ci right 5.437021e-06	k: 11	n:3620000
BTNL8   3620000 perm   6451 sec   (561 perm/sec)   p_kst 3.038674e-06   p_cons 6.568619e-02   p_joint 4.419890e-06

Joint ci ratio: 9.507373e-01	ci left: 2.519391e-06	ci right 7.157841e-06	k: 16	n:3630000
Cons ci ratio: 7.758828e-03	ci left: 6.544424e-02	ci right 6.595425e-02	k: 238487	n:3630000
KS ci ratio: 1.131605e+00	ci left: 1.512717e-06	ci right 5.422043e-06	k: 11	n:3630000
BTNL8   3630000 perm   6485 sec   (560 perm/sec)   p_kst 3.030303e-06   p_cons 6.569890e-02   p_joint 4.407713e-06

Joint ci ratio: 9.507373e-01	ci left: 2.512470e-06	ci right 7.138176e-06	k: 16	n:3640000
Cons ci ratio: 7.748024e-03	ci left: 6.544678e-02	ci right 6.595610e-02	k: 239152	n:3640000
KS ci ratio: 1.131605e+00	ci left: 1.508561e-06	ci right 5.407147e-06	k: 11	n:3640000
BTNL8   3640000 perm   6518 sec   (558 perm/sec)   p_kst 3.021978e-06   p_cons 6.570110e-02   p_joint 4.395604e-06

Joint ci ratio: 9.507373e-01	ci left: 2.505586e-06	ci right 7.118620e-06	k: 16	n:3650000
Cons ci ratio: 7.737075e-03	ci left: 6.545233e-02	ci right 6.596097e-02	k: 239828	n:3650000
KS ci ratio: 1.131605e+00	ci left: 1.504428e-06	ci right 5.392333e-06	k: 11	n:3650000
BTNL8   3650000 perm   6552 sec   (557 perm/sec)   p_kst 3.013699e-06   p_cons 6.570630e-02   p_joint 4.383562e-06

Joint ci ratio: 9.507373e-01	ci left: 2.498740e-06	ci right 7.099170e-06	k: 16	n:3660000
Cons ci ratio: 7.725983e-03	ci left: 6.546084e-02	ci right 6.596881e-02	k: 240515	n:3660000
KS ci ratio: 1.131605e+00	ci left: 1.500318e-06	ci right 5.377600e-06	k: 11	n:3660000
BTNL8   3660000 perm   6585 sec   (556 perm/sec)   p_kst 3.005464e-06   p_cons 6.571448e-02   p_joint 4.371585e-06

Joint ci ratio: 9.507373e-01	ci left: 2.491932e-06	ci right 7.079826e-06	k: 16	n:3670000
Cons ci ratio: 7.715641e-03	ci left: 6.545815e-02	ci right 6.596542e-02	k: 241161	n:3670000
KS ci ratio: 1.131605e+00	ci left: 1.496230e-06	ci right 5.362947e-06	k: 11	n:3670000
BTNL8   3670000 perm   6620 sec   (554 perm/sec)   p_kst 2.997275e-06   p_cons 6.571144e-02   p_joint 4.359673e-06

Joint ci ratio: 9.507373e-01	ci left: 2.485160e-06	ci right 7.060588e-06	k: 16	n:3680000
Cons ci ratio: 7.705477e-03	ci left: 6.545331e-02	ci right 6.595987e-02	k: 241799	n:3680000
KS ci ratio: 1.131605e+00	ci left: 1.492164e-06	ci right 5.348374e-06	k: 11	n:3680000
BTNL8   3680000 perm   6653 sec   (553 perm/sec)   p_kst 2.989130e-06   p_cons 6.570625e-02   p_joint 4.347826e-06

Joint ci ratio: 9.507373e-01	ci left: 2.478425e-06	ci right 7.041453e-06	k: 16	n:3690000
Cons ci ratio: 7.695591e-03	ci left: 6.544471e-02	ci right 6.595055e-02	k: 242423	n:3690000
KS ci ratio: 1.131605e+00	ci left: 1.488120e-06	ci right 5.333879e-06	k: 11	n:3690000
BTNL8   3690000 perm   6686 sec   (552 perm/sec)   p_kst 2.981030e-06   p_cons 6.569729e-02   p_joint 4.336043e-06

Joint ci ratio: 9.507373e-01	ci left: 2.471727e-06	ci right 7.022422e-06	k: 16	n:3700000
Cons ci ratio: 7.685319e-03	ci left: 6.544290e-02	ci right 6.594805e-02	k: 243072	n:3700000
KS ci ratio: 1.131605e+00	ci left: 1.484098e-06	ci right 5.319464e-06	k: 11	n:3700000
BTNL8   3700000 perm   6721 sec   (551 perm/sec)   p_kst 2.972973e-06   p_cons 6.569514e-02   p_joint 4.324324e-06

Joint ci ratio: 9.507373e-01	ci left: 2.465065e-06	ci right 7.003494e-06	k: 16	n:3710000
Cons ci ratio: 7.674516e-03	ci left: 6.545025e-02	ci right 6.595474e-02	k: 243755	n:3710000
KS ci ratio: 1.131605e+00	ci left: 1.480098e-06	ci right 5.305125e-06	k: 11	n:3710000
BTNL8   3710000 perm   6756 sec   (549 perm/sec)   p_kst 2.964960e-06   p_cons 6.570216e-02   p_joint 4.312668e-06

Joint ci ratio: 9.239505e-01	ci left: 2.662133e-06	ci right 7.316830e-06	k: 17	n:3720000
Cons ci ratio: 7.664429e-03	ci left: 6.544682e-02	ci right 6.595063e-02	k: 244398	n:3720000
KS ci ratio: 1.087210e+00	ci left: 1.666822e-06	ci right 5.634828e-06	k: 12	n:3720000
BTNL8   3720000 perm   6790 sec   (548 perm/sec)   p_kst 3.225806e-06   p_cons 6.569839e-02   p_joint 4.569892e-06

Joint ci ratio: 9.239505e-01	ci left: 2.654996e-06	ci right 7.297214e-06	k: 17	n:3730000
Cons ci ratio: 7.653646e-03	ci left: 6.545519e-02	ci right 6.595835e-02	k: 245085	n:3730000
KS ci ratio: 1.087210e+00	ci left: 1.662354e-06	ci right 5.619721e-06	k: 12	n:3730000
BTNL8   3730000 perm   6825 sec   (547 perm/sec)   p_kst 3.217158e-06   p_cons 6.570643e-02   p_joint 4.557641e-06

Joint ci ratio: 9.239505e-01	ci left: 2.647897e-06	ci right 7.277703e-06	k: 17	n:3740000
Cons ci ratio: 7.642992e-03	ci left: 6.546219e-02	ci right 6.596469e-02	k: 245767	n:3740000
KS ci ratio: 1.087210e+00	ci left: 1.657909e-06	ci right 5.604695e-06	k: 12	n:3740000
BTNL8   3740000 perm   6860 sec   (545 perm/sec)   p_kst 3.208556e-06   p_cons 6.571310e-02   p_joint 4.545455e-06

Joint ci ratio: 9.239505e-01	ci left: 2.640836e-06	ci right 7.258296e-06	k: 17	n:3750000
Cons ci ratio: 7.632880e-03	ci left: 6.546115e-02	ci right 6.596298e-02	k: 246419	n:3750000
KS ci ratio: 1.087210e+00	ci left: 1.653488e-06	ci right 5.589749e-06	k: 12	n:3750000
BTNL8   3750000 perm   6896 sec   (544 perm/sec)   p_kst 3.200000e-06   p_cons 6.571173e-02   p_joint 4.533333e-06

Joint ci ratio: 9.239505e-01	ci left: 2.633812e-06	ci right 7.238992e-06	k: 17	n:3760000
Cons ci ratio: 7.622411e-03	ci left: 6.546650e-02	ci right 6.596768e-02	k: 247095	n:3760000
KS ci ratio: 1.087210e+00	ci left: 1.649090e-06	ci right 5.574883e-06	k: 12	n:3760000
BTNL8   3760000 perm   6930 sec   (543 perm/sec)   p_kst 3.191489e-06   p_cons 6.571676e-02   p_joint 4.521277e-06

Joint ci ratio: 9.239505e-01	ci left: 2.626826e-06	ci right 7.219790e-06	k: 17	n:3770000
Cons ci ratio: 7.611920e-03	ci left: 6.547288e-02	ci right 6.597341e-02	k: 247775	n:3770000
KS ci ratio: 1.087210e+00	ci left: 1.644716e-06	ci right 5.560096e-06	k: 12	n:3770000
BTNL8   3770000 perm   6966 sec   (541 perm/sec)   p_kst 3.183024e-06   p_cons 6.572281e-02   p_joint 4.509284e-06

Joint ci ratio: 9.239505e-01	ci left: 2.619877e-06	ci right 7.200690e-06	k: 17	n:3780000
Cons ci ratio: 7.601570e-03	ci left: 6.547764e-02	ci right 6.597752e-02	k: 248449	n:3780000
KS ci ratio: 1.087210e+00	ci left: 1.640365e-06	ci right 5.545386e-06	k: 12	n:3780000
BTNL8   3780000 perm   7000 sec   (540 perm/sec)   p_kst 3.174603e-06   p_cons 6.572725e-02   p_joint 4.497354e-06

Joint ci ratio: 9.239505e-01	ci left: 2.612964e-06	ci right 7.181691e-06	k: 17	n:3790000
Cons ci ratio: 7.591442e-03	ci left: 6.547948e-02	ci right 6.597871e-02	k: 249112	n:3790000
KS ci ratio: 1.087210e+00	ci left: 1.636037e-06	ci right 5.530755e-06	k: 12	n:3790000
BTNL8   3790000 perm   7037 sec   (539 perm/sec)   p_kst 3.166227e-06   p_cons 6.572876e-02   p_joint 4.485488e-06

Joint ci ratio: 9.239506e-01	ci left: 2.606088e-06	ci right 7.162792e-06	k: 17	n:3800000
Cons ci ratio: 7.580801e-03	ci left: 6.549024e-02	ci right 6.598885e-02	k: 249809	n:3800000
KS ci ratio: 1.087210e+00	ci left: 1.631731e-06	ci right 5.516200e-06	k: 12	n:3800000
BTNL8   3800000 perm   7073 sec   (537 perm/sec)   p_kst 3.157895e-06   p_cons 6.573921e-02   p_joint 4.473684e-06

Joint ci ratio: 9.239506e-01	ci left: 2.599248e-06	ci right 7.143992e-06	k: 17	n:3810000
Cons ci ratio: 7.570125e-03	ci left: 6.550225e-02	ci right 6.600025e-02	k: 250511	n:3810000
KS ci ratio: 1.087210e+00	ci left: 1.627449e-06	ci right 5.501722e-06	k: 12	n:3810000
BTNL8   3810000 perm   7108 sec   (536 perm/sec)   p_kst 3.149606e-06   p_cons 6.575092e-02   p_joint 4.461942e-06

Joint ci ratio: 9.239506e-01	ci left: 2.592444e-06	ci right 7.125291e-06	k: 17	n:3820000
Cons ci ratio: 7.560202e-03	ci left: 6.550270e-02	ci right 6.600005e-02	k: 251169	n:3820000
KS ci ratio: 1.087210e+00	ci left: 1.623188e-06	ci right 5.487319e-06	k: 12	n:3820000
BTNL8   3820000 perm   7144 sec   (535 perm/sec)   p_kst 3.141361e-06   p_cons 6.575105e-02   p_joint 4.450262e-06

Joint ci ratio: 9.239506e-01	ci left: 2.585675e-06	ci right 7.106687e-06	k: 17	n:3830000
Cons ci ratio: 7.550446e-03	ci left: 6.550107e-02	ci right 6.599776e-02	k: 251819	n:3830000
KS ci ratio: 1.087210e+00	ci left: 1.618950e-06	ci right 5.472992e-06	k: 12	n:3830000
BTNL8   3830000 perm   7181 sec   (533 perm/sec)   p_kst 3.133159e-06   p_cons 6.574909e-02   p_joint 4.438642e-06

Joint ci ratio: 9.239506e-01	ci left: 2.578941e-06	ci right 7.088180e-06	k: 17	n:3840000
Cons ci ratio: 7.540776e-03	ci left: 6.549867e-02	ci right 6.599470e-02	k: 252466	n:3840000
KS ci ratio: 1.087210e+00	ci left: 1.614734e-06	ci right 5.458740e-06	k: 12	n:3840000
BTNL8   3840000 perm   7216 sec   (532 perm/sec)   p_kst 3.125000e-06   p_cons 6.574635e-02   p_joint 4.427083e-06

Joint ci ratio: 9.239506e-01	ci left: 2.572243e-06	ci right 7.069769e-06	k: 17	n:3850000
Cons ci ratio: 7.530809e-03	ci left: 6.550172e-02	ci right 6.599712e-02	k: 253134	n:3850000
KS ci ratio: 1.087210e+00	ci left: 1.610540e-06	ci right 5.444561e-06	k: 12	n:3850000
BTNL8   3850000 perm   7253 sec   (531 perm/sec)   p_kst 3.116883e-06   p_cons 6.574909e-02   p_joint 4.415584e-06

Joint ci ratio: 9.239506e-01	ci left: 2.565579e-06	ci right 7.051454e-06	k: 17	n:3860000
Cons ci ratio: 7.520849e-03	ci left: 6.550528e-02	ci right 6.600004e-02	k: 253804	n:3860000
KS ci ratio: 1.087210e+00	ci left: 1.606368e-06	ci right 5.430456e-06	k: 12	n:3860000
BTNL8   3860000 perm   7289 sec   (530 perm/sec)   p_kst 3.108808e-06   p_cons 6.575233e-02   p_joint 4.404145e-06

Joint ci ratio: 9.239506e-01	ci left: 2.558949e-06	ci right 7.033233e-06	k: 17	n:3870000
Cons ci ratio: 7.510961e-03	ci left: 6.550830e-02	ci right 6.600243e-02	k: 254472	n:3870000
KS ci ratio: 1.087210e+00	ci left: 1.602217e-06	ci right 5.416424e-06	k: 12	n:3870000
BTNL8   3870000 perm   7324 sec   (528 perm/sec)   p_kst 3.100775e-06   p_cons 6.575504e-02   p_joint 4.392765e-06

Joint ci ratio: 9.239506e-01	ci left: 2.552354e-06	ci right 7.015106e-06	k: 17	n:3880000
Cons ci ratio: 7.501268e-03	ci left: 6.550873e-02	ci right 6.600223e-02	k: 255130	n:3880000
KS ci ratio: 1.087210e+00	ci left: 1.598087e-06	ci right 5.402464e-06	k: 12	n:3880000
BTNL8   3880000 perm   7361 sec   (527 perm/sec)   p_kst 3.092784e-06   p_cons 6.575515e-02   p_joint 4.381443e-06

Joint ci ratio: 9.239506e-01	ci left: 2.545793e-06	ci right 6.997072e-06	k: 17	n:3890000
Cons ci ratio: 7.491629e-03	ci left: 6.550891e-02	ci right 6.600177e-02	k: 255787	n:3890000
KS ci ratio: 1.087210e+00	ci left: 1.593979e-06	ci right 5.388576e-06	k: 12	n:3890000
BTNL8   3890000 perm   7398 sec   (526 perm/sec)   p_kst 3.084833e-06   p_cons 6.575501e-02   p_joint 4.370180e-06

Joint ci ratio: 9.239506e-01	ci left: 2.539265e-06	ci right 6.979131e-06	k: 17	n:3900000
Cons ci ratio: 7.482089e-03	ci left: 6.550806e-02	ci right 6.600028e-02	k: 256440	n:3900000
KS ci ratio: 1.087210e+00	ci left: 1.589892e-06	ci right 5.374759e-06	k: 12	n:3900000
BTNL8   3900000 perm   7435 sec   (525 perm/sec)   p_kst 3.076923e-06   p_cons 6.575385e-02   p_joint 4.358974e-06

Joint ci ratio: 9.239506e-01	ci left: 2.532771e-06	ci right 6.961282e-06	k: 17	n:3910000
Cons ci ratio: 7.472368e-03	ci left: 6.551079e-02	ci right 6.600239e-02	k: 257107	n:3910000
KS ci ratio: 1.087210e+00	ci left: 1.585826e-06	ci right 5.361013e-06	k: 12	n:3910000
BTNL8   3910000 perm   7471 sec   (523 perm/sec)   p_kst 3.069054e-06   p_cons 6.575627e-02   p_joint 4.347826e-06

Joint ci ratio: 9.239506e-01	ci left: 2.526310e-06	ci right 6.943523e-06	k: 17	n:3920000
Cons ci ratio: 7.462514e-03	ci left: 6.551630e-02	ci right 6.600730e-02	k: 257785	n:3920000
KS ci ratio: 1.087210e+00	ci left: 1.581780e-06	ci right 5.347337e-06	k: 12	n:3920000
BTNL8   3920000 perm   7509 sec   (522 perm/sec)   p_kst 3.061224e-06   p_cons 6.576148e-02   p_joint 4.336735e-06

Joint ci ratio: 9.239506e-01	ci left: 2.519881e-06	ci right 6.925855e-06	k: 17	n:3930000
Cons ci ratio: 7.453224e-03	ci left: 6.551316e-02	ci right 6.600351e-02	k: 258429	n:3930000
KS ci ratio: 1.087210e+00	ci left: 1.577755e-06	ci right 5.333731e-06	k: 12	n:3930000
BTNL8   3930000 perm   7545 sec   (521 perm/sec)   p_kst 3.053435e-06   p_cons 6.575802e-02   p_joint 4.325700e-06

Joint ci ratio: 8.993074e-01	ci left: 2.707601e-06	ci right 7.220234e-06	k: 18	n:3940000
Cons ci ratio: 7.443630e-03	ci left: 6.551560e-02	ci right 6.600534e-02	k: 259095	n:3940000
KS ci ratio: 1.087210e+00	ci left: 1.573751e-06	ci right 5.320193e-06	k: 12	n:3940000
BTNL8   3940000 perm   7582 sec   (520 perm/sec)   p_kst 3.045685e-06   p_cons 6.576015e-02   p_joint 4.568528e-06

Joint ci ratio: 8.993074e-01	ci left: 2.700747e-06	ci right 7.201955e-06	k: 18	n:3950000
Cons ci ratio: 7.433874e-03	ci left: 6.552132e-02	ci right 6.601046e-02	k: 259774	n:3950000
KS ci ratio: 1.087210e+00	ci left: 1.569767e-06	ci right 5.306724e-06	k: 12	n:3950000
BTNL8   3950000 perm   7618 sec   (519 perm/sec)   p_kst 3.037975e-06   p_cons 6.576557e-02   p_joint 4.556962e-06

Joint ci ratio: 8.993074e-01	ci left: 2.693927e-06	ci right 7.183768e-06	k: 18	n:3960000
Cons ci ratio: 7.424981e-03	ci left: 6.551340e-02	ci right 6.600189e-02	k: 260399	n:3960000
KS ci ratio: 1.087210e+00	ci left: 1.565803e-06	ci right 5.293324e-06	k: 12	n:3960000
BTNL8   3960000 perm   7656 sec   (517 perm/sec)   p_kst 3.030303e-06   p_cons 6.575732e-02   p_joint 4.545455e-06

Joint ci ratio: 8.993074e-01	ci left: 2.687141e-06	ci right 7.165673e-06	k: 18	n:3970000
Cons ci ratio: 7.415358e-03	ci left: 6.551808e-02	ci right 6.600598e-02	k: 261074	n:3970000
KS ci ratio: 1.087210e+00	ci left: 1.561859e-06	ci right 5.279990e-06	k: 12	n:3970000
BTNL8   3970000 perm   7698 sec   (516 perm/sec)   p_kst 3.022670e-06   p_cons 6.576171e-02   p_joint 4.534005e-06

Joint ci ratio: 8.765363e-01	ci left: 2.874184e-06	ci right 7.454978e-06	k: 19	n:3980000
Cons ci ratio: 7.406061e-03	ci left: 6.551798e-02	ci right 6.600526e-02	k: 261730	n:3980000
KS ci ratio: 1.087210e+00	ci left: 1.557934e-06	ci right 5.266724e-06	k: 12	n:3980000
BTNL8   3980000 perm   7737 sec   (514 perm/sec)   p_kst 3.015075e-06   p_cons 6.576131e-02   p_joint 4.773869e-06

Joint ci ratio: 8.765363e-01	ci left: 2.866980e-06	ci right 7.436294e-06	k: 19	n:3990000
Cons ci ratio: 7.397041e-03	ci left: 6.551388e-02	ci right 6.600053e-02	k: 262370	n:3990000
KS ci ratio: 1.087210e+00	ci left: 1.554030e-06	ci right 5.253524e-06	k: 12	n:3990000
BTNL8   3990000 perm   7777 sec   (513 perm/sec)   p_kst 3.007519e-06   p_cons 6.575689e-02   p_joint 4.761905e-06

Joint ci ratio: 8.765363e-01	ci left: 2.859813e-06	ci right 7.417703e-06	k: 19	n:4000000
Cons ci ratio: 7.388083e-03	ci left: 6.550930e-02	ci right 6.599533e-02	k: 263008	n:4000000
KS ci ratio: 1.087210e+00	ci left: 1.550145e-06	ci right 5.240390e-06	k: 12	n:4000000
BTNL8   4000000 perm   7817 sec   (512 perm/sec)   p_kst 3.000000e-06   p_cons 6.575200e-02   p_joint 4.750000e-06

Joint ci ratio: 8.765364e-01	ci left: 2.852681e-06	ci right 7.399206e-06	k: 19	n:4010000
Cons ci ratio: 7.379037e-03	ci left: 6.550674e-02	ci right 6.599214e-02	k: 263654	n:4010000
KS ci ratio: 1.087210e+00	ci left: 1.546279e-06	ci right 5.227322e-06	k: 12	n:4010000
BTNL8   4010000 perm   7856 sec   (510 perm/sec)   p_kst 2.992519e-06   p_cons 6.574913e-02   p_joint 4.738155e-06

Joint ci ratio: 8.765364e-01	ci left: 2.845585e-06	ci right 7.380800e-06	k: 19	n:4020000
Cons ci ratio: 7.369369e-03	ci left: 6.551511e-02	ci right 6.599994e-02	k: 264344	n:4020000
KS ci ratio: 1.087210e+00	ci left: 1.542433e-06	ci right 5.214319e-06	k: 12	n:4020000
BTNL8   4020000 perm   7893 sec   (509 perm/sec)   p_kst 2.985075e-06   p_cons 6.575721e-02   p_joint 4.726368e-06

Joint ci ratio: 8.765364e-01	ci left: 2.838524e-06	ci right 7.362485e-06	k: 19	n:4030000
Cons ci ratio: 7.360496e-03	ci left: 6.551081e-02	ci right 6.599502e-02	k: 264983	n:4030000
KS ci ratio: 1.087210e+00	ci left: 1.538605e-06	ci right 5.201380e-06	k: 12	n:4030000
BTNL8   4030000 perm   7931 sec   (508 perm/sec)   p_kst 2.977667e-06   p_cons 6.575261e-02   p_joint 4.714640e-06

Joint ci ratio: 8.993075e-01	ci left: 2.640581e-06	ci right 7.041516e-06	k: 18	n:4040000
Cons ci ratio: 7.351300e-03	ci left: 6.551246e-02	ci right 6.599608e-02	k: 265646	n:4040000
KS ci ratio: 1.087211e+00	ci left: 1.534797e-06	ci right 5.188505e-06	k: 12	n:4040000
BTNL8   4040000 perm   7970 sec   (507 perm/sec)   p_kst 2.970297e-06   p_cons 6.575396e-02   p_joint 4.455446e-06

Joint ci ratio: 8.993075e-01	ci left: 2.634062e-06	ci right 7.024129e-06	k: 18	n:4050000
Cons ci ratio: 7.342035e-03	ci left: 6.551583e-02	ci right 6.599886e-02	k: 266316	n:4050000
KS ci ratio: 1.087211e+00	ci left: 1.531007e-06	ci right 5.175694e-06	k: 12	n:4050000
BTNL8   4050000 perm   8011 sec   (506 perm/sec)   p_kst 2.962963e-06   p_cons 6.575704e-02   p_joint 4.444444e-06

Joint ci ratio: 8.993075e-01	ci left: 2.627574e-06	ci right 7.006828e-06	k: 18	n:4060000
Cons ci ratio: 7.803496e-03	ci left: 5.828838e-02	ci right 5.874525e-02	k: 237577	n:4060000
KS ci ratio: 1.087211e+00	ci left: 1.527236e-06	ci right 5.162946e-06	k: 12	n:4060000
BTNL8   4060000 perm   8051 sec   (504 perm/sec)   p_kst 2.955665e-06   p_cons 5.851650e-02   p_joint 4.433498e-06

Joint ci ratio: 8.993075e-01	ci left: 2.621118e-06	ci right 6.989613e-06	k: 18	n:4070000
Cons ci ratio: 7.793941e-03	ci left: 5.828813e-02	ci right 5.874444e-02	k: 238160	n:4070000
KS ci ratio: 1.087211e+00	ci left: 1.523484e-06	ci right 5.150261e-06	k: 12	n:4070000
BTNL8   4070000 perm   8092 sec   (503 perm/sec)   p_kst 2.948403e-06   p_cons 5.851597e-02   p_joint 4.422604e-06

Joint ci ratio: 8.993075e-01	ci left: 2.614693e-06	ci right 6.972481e-06	k: 18	n:4080000
Cons ci ratio: 7.785114e-03	ci left: 5.827810e-02	ci right 5.873381e-02	k: 238703	n:4080000
KS ci ratio: 1.087211e+00	ci left: 1.519750e-06	ci right 5.137638e-06	k: 12	n:4080000
BTNL8   4080000 perm   8131 sec   (502 perm/sec)   p_kst 2.941176e-06   p_cons 5.850564e-02   p_joint 4.411765e-06

Joint ci ratio: 8.993075e-01	ci left: 2.608300e-06	ci right 6.955434e-06	k: 18	n:4090000
Cons ci ratio: 7.775178e-03	ci left: 5.828422e-02	ci right 5.873939e-02	k: 239312	n:4090000
KS ci ratio: 1.087211e+00	ci left: 1.516034e-06	ci right 5.125076e-06	k: 12	n:4090000
BTNL8   4090000 perm   8169 sec   (501 perm/sec)   p_kst 2.933985e-06   p_cons 5.851149e-02   p_joint 4.400978e-06

Joint ci ratio: 8.993075e-01	ci left: 2.601939e-06	ci right 6.938469e-06	k: 18	n:4100000
Cons ci ratio: 7.765142e-03	ci left: 5.829226e-02	ci right 5.874690e-02	k: 239929	n:4100000
KS ci ratio: 1.087211e+00	ci left: 1.512336e-06	ci right 5.112576e-06	k: 12	n:4100000
BTNL8   4100000 perm   8208 sec   (499 perm/sec)   p_kst 2.926829e-06   p_cons 5.851927e-02   p_joint 4.390244e-06

Joint ci ratio: 8.993075e-01	ci left: 2.595608e-06	ci right 6.921587e-06	k: 18	n:4110000
Cons ci ratio: 7.755607e-03	ci left: 5.829370e-02	ci right 5.874780e-02	k: 240519	n:4110000
KS ci ratio: 1.087211e+00	ci left: 1.508657e-06	ci right 5.100137e-06	k: 12	n:4110000
BTNL8   4110000 perm   8247 sec   (498 perm/sec)   p_kst 2.919708e-06   p_cons 5.852044e-02   p_joint 4.379562e-06

Joint ci ratio: 8.993075e-01	ci left: 2.589308e-06	ci right 6.904787e-06	k: 18	n:4120000
Cons ci ratio: 7.746227e-03	ci left: 5.829344e-02	ci right 5.874699e-02	k: 241102	n:4120000
KS ci ratio: 1.047662e+00	ci left: 1.680087e-06	ci right 5.395721e-06	k: 13	n:4120000
BTNL8   4120000 perm   8288 sec   (497 perm/sec)   p_kst 3.155340e-06   p_cons 5.851990e-02   p_joint 4.368932e-06

Joint ci ratio: 8.993075e-01	ci left: 2.583038e-06	ci right 6.888069e-06	k: 18	n:4130000
Cons ci ratio: 7.736320e-03	ci left: 5.830116e-02	ci right 5.875418e-02	k: 241718	n:4130000
KS ci ratio: 1.047662e+00	ci left: 1.676019e-06	ci right 5.382656e-06	k: 13	n:4130000
BTNL8   4130000 perm   8329 sec   (496 perm/sec)   p_kst 3.147700e-06   p_cons 5.852736e-02   p_joint 4.358354e-06

Joint ci ratio: 8.993075e-01	ci left: 2.576799e-06	ci right 6.871431e-06	k: 18	n:4140000
Cons ci ratio: 7.727416e-03	ci left: 5.829510e-02	ci right 5.874755e-02	k: 242277	n:4140000
KS ci ratio: 1.047662e+00	ci left: 1.671970e-06	ci right 5.369655e-06	k: 13	n:4140000
BTNL8   4140000 perm   8371 sec   (495 perm/sec)   p_kst 3.140097e-06   p_cons 5.852101e-02   p_joint 4.347826e-06

Joint ci ratio: 8.993075e-01	ci left: 2.570590e-06	ci right 6.854873e-06	k: 18	n:4150000
Cons ci ratio: 7.718289e-03	ci left: 5.829267e-02	ci right 5.874457e-02	k: 242851	n:4150000
KS ci ratio: 1.047662e+00	ci left: 1.667941e-06	ci right 5.356716e-06	k: 13	n:4150000
BTNL8   4150000 perm   8410 sec   (493 perm/sec)   p_kst 3.132530e-06   p_cons 5.851831e-02   p_joint 4.337349e-06

Joint ci ratio: 8.993075e-01	ci left: 2.564411e-06	ci right 6.838395e-06	k: 18	n:4160000
Cons ci ratio: 7.709414e-03	ci left: 5.828714e-02	ci right 5.873847e-02	k: 243412	n:4160000
KS ci ratio: 1.047662e+00	ci left: 1.663932e-06	ci right 5.343839e-06	k: 13	n:4160000
BTNL8   4160000 perm   8449 sec   (492 perm/sec)   p_kst 3.125000e-06   p_cons 5.851250e-02   p_joint 4.326923e-06

Joint ci ratio: 8.993075e-01	ci left: 2.558261e-06	ci right 6.821996e-06	k: 18	n:4170000
Cons ci ratio: 7.700418e-03	ci left: 5.828379e-02	ci right 5.873457e-02	k: 243982	n:4170000
KS ci ratio: 1.047662e+00	ci left: 1.659942e-06	ci right 5.331024e-06	k: 13	n:4170000
BTNL8   4170000 perm   8490 sec   (491 perm/sec)   p_kst 3.117506e-06   p_cons 5.850887e-02   p_joint 4.316547e-06

Joint ci ratio: 8.993075e-01	ci left: 2.552141e-06	ci right 6.805676e-06	k: 18	n:4180000
Cons ci ratio: 7.691437e-03	ci left: 5.828070e-02	ci right 5.873092e-02	k: 244553	n:4180000
KS ci ratio: 1.047662e+00	ci left: 1.655971e-06	ci right 5.318271e-06	k: 13	n:4180000
BTNL8   4180000 perm   8528 sec   (490 perm/sec)   p_kst 3.110048e-06   p_cons 5.850550e-02   p_joint 4.306220e-06

Joint ci ratio: 8.993075e-01	ci left: 2.546050e-06	ci right 6.789433e-06	k: 18	n:4190000
Cons ci ratio: 7.682121e-03	ci left: 5.828286e-02	ci right 5.873255e-02	k: 245146	n:4190000
KS ci ratio: 1.047662e+00	ci left: 1.652018e-06	ci right 5.305578e-06	k: 13	n:4190000
BTNL8   4190000 perm   8566 sec   (489 perm/sec)   p_kst 3.102625e-06   p_cons 5.850740e-02   p_joint 4.295943e-06

Joint ci ratio: 8.993075e-01	ci left: 2.539988e-06	ci right 6.773268e-06	k: 18	n:4200000
Cons ci ratio: 7.672673e-03	ci left: 5.828739e-02	ci right 5.873656e-02	k: 245749	n:4200000
KS ci ratio: 1.047662e+00	ci left: 1.648085e-06	ci right 5.292946e-06	k: 13	n:4200000
BTNL8   4200000 perm   8605 sec   (488 perm/sec)   p_kst 3.095238e-06   p_cons 5.851167e-02   p_joint 4.285714e-06

Joint ci ratio: 8.993075e-01	ci left: 2.533955e-06	ci right 6.757179e-06	k: 18	n:4210000
Cons ci ratio: 7.664069e-03	ci left: 5.828027e-02	ci right 5.872888e-02	k: 246303	n:4210000
KS ci ratio: 1.047662e+00	ci left: 1.644170e-06	ci right 5.280373e-06	k: 13	n:4210000
BTNL8   4210000 perm   8644 sec   (487 perm/sec)   p_kst 3.087886e-06   p_cons 5.850428e-02   p_joint 4.275534e-06

Joint ci ratio: 8.993075e-01	ci left: 2.527950e-06	ci right 6.741167e-06	k: 18	n:4220000
Cons ci ratio: 7.655346e-03	ci left: 5.827532e-02	ci right 5.872339e-02	k: 246866	n:4220000
KS ci ratio: 1.047662e+00	ci left: 1.640274e-06	ci right 5.267861e-06	k: 13	n:4220000
BTNL8   4220000 perm   8685 sec   (486 perm/sec)   p_kst 3.080569e-06   p_cons 5.849905e-02   p_joint 4.265403e-06

Joint ci ratio: 8.993076e-01	ci left: 2.521974e-06	ci right 6.725231e-06	k: 18	n:4230000
Cons ci ratio: 7.646636e-03	ci left: 5.827064e-02	ci right 5.871815e-02	k: 247430	n:4230000
KS ci ratio: 1.047662e+00	ci left: 1.636396e-06	ci right 5.255407e-06	k: 13	n:4230000
BTNL8   4230000 perm   8726 sec   (485 perm/sec)   p_kst 3.073286e-06   p_cons 5.849409e-02   p_joint 4.255319e-06

Joint ci ratio: 8.993076e-01	ci left: 2.516026e-06	ci right 6.709369e-06	k: 18	n:4240000
Cons ci ratio: 7.636615e-03	ci left: 5.828527e-02	ci right 5.873231e-02	k: 248076	n:4240000
KS ci ratio: 1.047662e+00	ci left: 1.632537e-06	ci right 5.243012e-06	k: 13	n:4240000
BTNL8   4240000 perm   8765 sec   (484 perm/sec)   p_kst 3.066038e-06   p_cons 5.850849e-02   p_joint 4.245283e-06

Joint ci ratio: 8.993076e-01	ci left: 2.510106e-06	ci right 6.693582e-06	k: 18	n:4250000
Cons ci ratio: 7.627937e-03	ci left: 5.828105e-02	ci right 5.872755e-02	k: 248642	n:4250000
KS ci ratio: 1.047662e+00	ci left: 1.628696e-06	ci right 5.230676e-06	k: 13	n:4250000
BTNL8   4250000 perm   8804 sec   (483 perm/sec)   p_kst 3.058824e-06   p_cons 5.850400e-02   p_joint 4.235294e-06

Joint ci ratio: 8.993076e-01	ci left: 2.504213e-06	ci right 6.677870e-06	k: 18	n:4260000
Cons ci ratio: 7.619223e-03	ci left: 5.827779e-02	ci right 5.872375e-02	k: 249212	n:4260000
KS ci ratio: 1.047662e+00	ci left: 1.624872e-06	ci right 5.218397e-06	k: 13	n:4260000
BTNL8   4260000 perm   8847 sec   (482 perm/sec)   p_kst 3.051643e-06   p_cons 5.850047e-02   p_joint 4.225352e-06

Joint ci ratio: 8.993076e-01	ci left: 2.498349e-06	ci right 6.662231e-06	k: 18	n:4270000
Cons ci ratio: 7.611251e-03	ci left: 5.826426e-02	ci right 5.870964e-02	k: 249738	n:4270000
KS ci ratio: 1.047662e+00	ci left: 1.621067e-06	ci right 5.206176e-06	k: 13	n:4270000
BTNL8   4270000 perm   8888 sec   (480 perm/sec)   p_kst 3.044496e-06   p_cons 5.848665e-02   p_joint 4.215457e-06

Joint ci ratio: 9.239508e-01	ci left: 2.313816e-06	ci right 6.359489e-06	k: 17	n:4280000
Cons ci ratio: 7.601820e-03	ci left: 5.827225e-02	ci right 5.871714e-02	k: 250356	n:4280000
KS ci ratio: 1.047662e+00	ci left: 1.617280e-06	ci right 5.194012e-06	k: 13	n:4280000
BTNL8   4280000 perm   8929 sec   (479 perm/sec)   p_kst 3.037383e-06   p_cons 5.849439e-02   p_joint 3.971963e-06

Joint ci ratio: 9.239508e-01	ci left: 2.308423e-06	ci right 6.344665e-06	k: 17	n:4290000
Cons ci ratio: 7.593098e-03	ci left: 5.827042e-02	ci right 5.871479e-02	k: 250932	n:4290000
KS ci ratio: 1.047662e+00	ci left: 1.613510e-06	ci right 5.181905e-06	k: 13	n:4290000
BTNL8   4290000 perm   8970 sec   (478 perm/sec)   p_kst 3.030303e-06   p_cons 5.849231e-02   p_joint 3.962704e-06

Joint ci ratio: 9.239508e-01	ci left: 2.303054e-06	ci right 6.329910e-06	k: 17	n:4300000
Cons ci ratio: 7.584823e-03	ci left: 5.826257e-02	ci right 5.870639e-02	k: 251482	n:4300000
KS ci ratio: 1.047662e+00	ci left: 1.609757e-06	ci right 5.169854e-06	k: 13	n:4300000
BTNL8   4300000 perm   9012 sec   (477 perm/sec)   p_kst 3.023256e-06   p_cons 5.848419e-02   p_joint 3.953488e-06

Joint ci ratio: 9.239508e-01	ci left: 2.297711e-06	ci right 6.315224e-06	k: 17	n:4310000
Cons ci ratio: 7.575953e-03	ci left: 5.826379e-02	ci right 5.870710e-02	k: 252071	n:4310000
KS ci ratio: 1.047662e+00	ci left: 1.606022e-06	ci right 5.157859e-06	k: 13	n:4310000
BTNL8   4310000 perm   9057 sec   (476 perm/sec)   p_kst 3.016241e-06   p_cons 5.848515e-02   p_joint 3.944316e-06

Joint ci ratio: 9.239508e-01	ci left: 2.292392e-06	ci right 6.300605e-06	k: 17	n:4320000
Cons ci ratio: 7.567415e-03	ci left: 5.826062e-02	ci right 5.870340e-02	k: 252641	n:4320000
KS ci ratio: 1.047662e+00	ci left: 1.602305e-06	ci right 5.145919e-06	k: 13	n:4320000
BTNL8   4320000 perm   9100 sec   (475 perm/sec)   p_kst 3.009259e-06   p_cons 5.848171e-02   p_joint 3.935185e-06

Joint ci ratio: 9.239508e-01	ci left: 2.287098e-06	ci right 6.286054e-06	k: 17	n:4330000
Cons ci ratio: 7.558479e-03	ci left: 5.826368e-02	ci right 5.870596e-02	k: 253238	n:4330000
KS ci ratio: 1.047662e+00	ci left: 1.598604e-06	ci right 5.134035e-06	k: 13	n:4330000
BTNL8   4330000 perm   9140 sec   (474 perm/sec)   p_kst 3.002309e-06   p_cons 5.848453e-02   p_joint 3.926097e-06

Joint ci ratio: 9.239508e-01	ci left: 2.281828e-06	ci right 6.271570e-06	k: 17	n:4340000
Cons ci ratio: 7.549827e-03	ci left: 5.826305e-02	ci right 5.870482e-02	k: 253819	n:4340000
KS ci ratio: 1.047662e+00	ci left: 1.594921e-06	ci right 5.122206e-06	k: 13	n:4340000
BTNL8   4340000 perm   9183 sec   (473 perm/sec)   p_kst 2.995392e-06   p_cons 5.848364e-02   p_joint 3.917051e-06

Joint ci ratio: 9.239508e-01	ci left: 2.276582e-06	ci right 6.257153e-06	k: 17	n:4350000
Cons ci ratio: 7.540795e-03	ci left: 5.826839e-02	ci right 5.870967e-02	k: 254426	n:4350000
KS ci ratio: 1.047662e+00	ci left: 1.591254e-06	ci right 5.110430e-06	k: 13	n:4350000
BTNL8   4350000 perm   9225 sec   (472 perm/sec)   p_kst 2.988506e-06   p_cons 5.848874e-02   p_joint 3.908046e-06

Joint ci ratio: 9.239508e-01	ci left: 2.271361e-06	ci right 6.242802e-06	k: 17	n:4360000
Cons ci ratio: 7.531764e-03	ci left: 5.827417e-02	ci right 5.871495e-02	k: 255035	n:4360000
KS ci ratio: 1.047662e+00	ci left: 1.587605e-06	ci right 5.098709e-06	k: 13	n:4360000
BTNL8   4360000 perm   9270 sec   (470 perm/sec)   p_kst 2.981651e-06   p_cons 5.849427e-02   p_joint 3.899083e-06

Joint ci ratio: 9.239509e-01	ci left: 2.266163e-06	ci right 6.228516e-06	k: 17	n:4370000
Cons ci ratio: 7.522891e-03	ci left: 5.827809e-02	ci right 5.871838e-02	k: 255636	n:4370000
KS ci ratio: 1.047662e+00	ci left: 1.583972e-06	ci right 5.087042e-06	k: 13	n:4370000
BTNL8   4370000 perm   9311 sec   (469 perm/sec)   p_kst 2.974828e-06   p_cons 5.849794e-02   p_joint 3.890160e-06

Joint ci ratio: 8.993076e-01	ci left: 2.435605e-06	ci right 6.494915e-06	k: 18	n:4380000
Cons ci ratio: 7.514578e-03	ci left: 5.827424e-02	ci right 5.871402e-02	k: 256203	n:4380000
KS ci ratio: 1.047662e+00	ci left: 1.580355e-06	ci right 5.075428e-06	k: 13	n:4380000
BTNL8   4380000 perm   9352 sec   (468 perm/sec)   p_kst 2.968037e-06   p_cons 5.849384e-02   p_joint 4.109589e-06

Joint ci ratio: 8.993076e-01	ci left: 2.430057e-06	ci right 6.480120e-06	k: 18	n:4390000
Cons ci ratio: 7.505796e-03	ci left: 5.827769e-02	ci right 5.871697e-02	k: 256802	n:4390000
KS ci ratio: 1.047662e+00	ci left: 1.576755e-06	ci right 5.063866e-06	k: 13	n:4390000
BTNL8   4390000 perm   9393 sec   (467 perm/sec)   p_kst 2.961276e-06   p_cons 5.849704e-02   p_joint 4.100228e-06

Joint ci ratio: 8.993076e-01	ci left: 2.424534e-06	ci right 6.465392e-06	k: 18	n:4400000
Cons ci ratio: 7.496921e-03	ci left: 5.828293e-02	ci right 5.872174e-02	k: 257409	n:4400000
KS ci ratio: 1.047662e+00	ci left: 1.573172e-06	ci right 5.052357e-06	k: 13	n:4400000
BTNL8   4400000 perm   9435 sec   (466 perm/sec)   p_kst 2.954545e-06   p_cons 5.850205e-02   p_joint 4.090909e-06

Joint ci ratio: 8.993076e-01	ci left: 2.419036e-06	ci right 6.450732e-06	k: 18	n:4410000
Cons ci ratio: 7.488340e-03	ci left: 5.828431e-02	ci right 5.872262e-02	k: 257999	n:4410000
KS ci ratio: 1.047662e+00	ci left: 1.569605e-06	ci right 5.040901e-06	k: 13	n:4410000
BTNL8   4410000 perm   9477 sec   (465 perm/sec)   p_kst 2.947846e-06   p_cons 5.850317e-02   p_joint 4.081633e-06

Joint ci ratio: 8.993076e-01	ci left: 2.413563e-06	ci right 6.436137e-06	k: 18	n:4420000
Cons ci ratio: 7.480049e-03	ci left: 5.828184e-02	ci right 5.871964e-02	k: 258572	n:4420000
KS ci ratio: 1.047662e+00	ci left: 1.566053e-06	ci right 5.029496e-06	k: 13	n:4420000
BTNL8   4420000 perm   9520 sec   (464 perm/sec)   p_kst 2.941176e-06   p_cons 5.850045e-02   p_joint 4.072398e-06

Joint ci ratio: 8.993076e-01	ci left: 2.408115e-06	ci right 6.421609e-06	k: 18	n:4430000
Cons ci ratio: 7.471495e-03	ci left: 5.828366e-02	ci right 5.872098e-02	k: 259164	n:4430000
KS ci ratio: 1.047662e+00	ci left: 1.562518e-06	ci right 5.018143e-06	k: 13	n:4430000
BTNL8   4430000 perm   9566 sec   (463 perm/sec)   p_kst 2.934537e-06   p_cons 5.850203e-02   p_joint 4.063205e-06

Joint ci ratio: 8.993077e-01	ci left: 2.402691e-06	ci right 6.407146e-06	k: 18	n:4440000
Cons ci ratio: 7.462924e-03	ci left: 5.828615e-02	ci right 5.872298e-02	k: 259759	n:4440000
KS ci ratio: 1.047662e+00	ci left: 1.558999e-06	ci right 5.006841e-06	k: 13	n:4440000
BTNL8   4440000 perm   9608 sec   (462 perm/sec)   p_kst 2.927928e-06   p_cons 5.850428e-02   p_joint 4.054054e-06

Joint ci ratio: 8.993077e-01	ci left: 2.397292e-06	ci right 6.392748e-06	k: 18	n:4450000
Cons ci ratio: 7.454839e-03	ci left: 5.828190e-02	ci right 5.871822e-02	k: 260324	n:4450000
KS ci ratio: 1.047662e+00	ci left: 1.555496e-06	ci right 4.995589e-06	k: 13	n:4450000
BTNL8   4450000 perm   9651 sec   (461 perm/sec)   p_kst 2.921348e-06   p_cons 5.849978e-02   p_joint 4.044944e-06

Joint ci ratio: 8.993077e-01	ci left: 2.391917e-06	ci right 6.378414e-06	k: 18	n:4460000
Cons ci ratio: 7.446340e-03	ci left: 5.828416e-02	ci right 5.872000e-02	k: 260918	n:4460000
KS ci ratio: 1.047662e+00	ci left: 1.552008e-06	ci right 4.984389e-06	k: 13	n:4460000
BTNL8   4460000 perm   9693 sec   (460 perm/sec)   p_kst 2.914798e-06   p_cons 5.850179e-02   p_joint 4.035874e-06

Joint ci ratio: 8.993077e-01	ci left: 2.386566e-06	ci right 6.364145e-06	k: 18	n:4470000
Cons ci ratio: 7.437825e-03	ci left: 5.828708e-02	ci right 5.872244e-02	k: 261515	n:4470000
KS ci ratio: 1.047662e+00	ci left: 1.548536e-06	ci right 4.973238e-06	k: 13	n:4470000
BTNL8   4470000 perm   9736 sec   (459 perm/sec)   p_kst 2.908277e-06   p_cons 5.850447e-02   p_joint 4.026846e-06

Joint ci ratio: 8.993077e-01	ci left: 2.381238e-06	ci right 6.349939e-06	k: 18	n:4480000
Cons ci ratio: 7.429550e-03	ci left: 5.828687e-02	ci right 5.872174e-02	k: 262098	n:4480000
KS ci ratio: 1.047662e+00	ci left: 1.545080e-06	ci right 4.962137e-06	k: 13	n:4480000
BTNL8   4480000 perm   9781 sec   (458 perm/sec)   p_kst 2.901786e-06   p_cons 5.850402e-02   p_joint 4.017857e-06

Joint ci ratio: 1.012138e+00	ci left: 1.704663e-06	ci right 5.231536e-06	k: 14	n:4490000
Cons ci ratio: 7.421333e-03	ci left: 5.828621e-02	ci right 5.872060e-02	k: 262679	n:4490000
KS ci ratio: 1.012138e+00	ci left: 1.704663e-06	ci right 5.231536e-06	k: 14	n:4490000
BTNL8   4490000 perm   9826 sec   (457 perm/sec)   p_kst 3.118040e-06   p_cons 5.850312e-02   p_joint 3.118040e-06

Joint ci ratio: 1.012138e+00	ci left: 1.700874e-06	ci right 5.219910e-06	k: 14	n:4500000
Cons ci ratio: 7.413606e-03	ci left: 5.827868e-02	ci right 5.871256e-02	k: 263229	n:4500000
KS ci ratio: 1.012138e+00	ci left: 1.700874e-06	ci right 5.219910e-06	k: 14	n:4500000
BTNL8   4500000 perm   9867 sec   (456 perm/sec)   p_kst 3.111111e-06   p_cons 5.849533e-02   p_joint 3.111111e-06

Joint ci ratio: 1.012138e+00	ci left: 1.697103e-06	ci right 5.208336e-06	k: 14	n:4510000
Cons ci ratio: 7.405114e-03	ci left: 5.828291e-02	ci right 5.871632e-02	k: 263832	n:4510000
KS ci ratio: 1.012138e+00	ci left: 1.697103e-06	ci right 5.208336e-06	k: 14	n:4510000
BTNL8   4510000 perm   9914 sec   (455 perm/sec)   p_kst 3.104213e-06   p_cons 5.849933e-02   p_joint 3.104213e-06

Joint ci ratio: 1.012138e+00	ci left: 1.693348e-06	ci right 5.196813e-06	k: 14	n:4520000
Cons ci ratio: 7.397259e-03	ci left: 5.827807e-02	ci right 5.871099e-02	k: 264394	n:4520000
KS ci ratio: 1.012138e+00	ci left: 1.693348e-06	ci right 5.196813e-06	k: 14	n:4520000
BTNL8   4520000 perm   9960 sec   (454 perm/sec)   p_kst 3.097345e-06   p_cons 5.849425e-02   p_joint 3.097345e-06

Joint ci ratio: 1.012138e+00	ci left: 1.689610e-06	ci right 5.185341e-06	k: 14	n:4530000
Cons ci ratio: 7.388778e-03	ci left: 5.828295e-02	ci right 5.871540e-02	k: 265000	n:4530000
KS ci ratio: 1.012138e+00	ci left: 1.689610e-06	ci right 5.185341e-06	k: 14	n:4530000
BTNL8   4530000 perm   10004 sec   (453 perm/sec)   p_kst 3.090508e-06   p_cons 5.849890e-02   p_joint 3.090508e-06

Joint ci ratio: 1.012138e+00	ci left: 1.685889e-06	ci right 5.173920e-06	k: 14	n:4540000
Cons ci ratio: 7.380562e-03	ci left: 5.828429e-02	ci right 5.871627e-02	k: 265590	n:4540000
KS ci ratio: 1.012138e+00	ci left: 1.685889e-06	ci right 5.173920e-06	k: 14	n:4540000
BTNL8   4540000 perm   10047 sec   (452 perm/sec)   p_kst 3.083700e-06   p_cons 5.850000e-02   p_joint 3.083700e-06

Joint ci ratio: 1.012138e+00	ci left: 1.682183e-06	ci right 5.162549e-06	k: 14	n:4550000
Cons ci ratio: 7.372021e-03	ci left: 5.829089e-02	ci right 5.872242e-02	k: 266204	n:4550000
KS ci ratio: 1.012138e+00	ci left: 1.682183e-06	ci right 5.162549e-06	k: 14	n:4550000
BTNL8   4550000 perm   10093 sec   (451 perm/sec)   p_kst 3.076923e-06   p_cons 5.850637e-02   p_joint 3.076923e-06

Joint ci ratio: 1.012138e+00	ci left: 1.678494e-06	ci right 5.151227e-06	k: 14	n:4560000
Cons ci ratio: 7.363260e-03	ci left: 5.830119e-02	ci right 5.873227e-02	k: 266835	n:4560000
KS ci ratio: 1.012138e+00	ci left: 1.678494e-06	ci right 5.151227e-06	k: 14	n:4560000
BTNL8   4560000 perm   10135 sec   (450 perm/sec)   p_kst 3.070175e-06   p_cons 5.851645e-02   p_joint 3.070175e-06

Joint ci ratio: 1.012138e+00	ci left: 1.674822e-06	ci right 5.139956e-06	k: 14	n:4570000
Cons ci ratio: 7.355143e-03	ci left: 5.830226e-02	ci right 5.873287e-02	k: 267424	n:4570000
KS ci ratio: 1.012138e+00	ci left: 1.674822e-06	ci right 5.139956e-06	k: 14	n:4570000
BTNL8   4570000 perm   10183 sec   (449 perm/sec)   p_kst 3.063457e-06   p_cons 5.851729e-02   p_joint 3.063457e-06

Joint ci ratio: 1.012138e+00	ci left: 1.671165e-06	ci right 5.128733e-06	k: 14	n:4580000
Cons ci ratio: 7.347141e-03	ci left: 5.830202e-02	ci right 5.873216e-02	k: 268007	n:4580000
KS ci ratio: 9.799982e-01	ci left: 1.833055e-06	ci right 5.401789e-06	k: 15	n:4580000
BTNL8   4580000 perm   10230 sec   (448 perm/sec)   p_kst 3.275109e-06   p_cons 5.851681e-02   p_joint 3.056769e-06

Joint ci ratio: 1.012138e+00	ci left: 1.667524e-06	ci right 5.117559e-06	k: 14	n:4590000
Cons ci ratio: 7.339266e-03	ci left: 5.830026e-02	ci right 5.872993e-02	k: 268583	n:4590000
KS ci ratio: 9.799982e-01	ci left: 1.829061e-06	ci right 5.390020e-06	k: 15	n:4590000
BTNL8   4590000 perm   10275 sec   (447 perm/sec)   p_kst 3.267974e-06   p_cons 5.851481e-02   p_joint 3.050109e-06

Joint ci ratio: 1.012138e+00	ci left: 1.663899e-06	ci right 5.106434e-06	k: 14	n:4600000
Cons ci ratio: 7.330940e-03	ci left: 5.830567e-02	ci right 5.873489e-02	k: 269192	n:4600000
KS ci ratio: 9.799982e-01	ci left: 1.825085e-06	ci right 5.378303e-06	k: 15	n:4600000
BTNL8   4600000 perm   10320 sec   (446 perm/sec)   p_kst 3.260870e-06   p_cons 5.852000e-02   p_joint 3.043478e-06

Joint ci ratio: 1.012138e+00	ci left: 1.660290e-06	ci right 5.095357e-06	k: 14	n:4610000
Cons ci ratio: 7.323578e-03	ci left: 5.829698e-02	ci right 5.872570e-02	k: 269736	n:4610000
KS ci ratio: 9.799982e-01	ci left: 1.821126e-06	ci right 5.366636e-06	k: 15	n:4610000
BTNL8   4610000 perm   10366 sec   (445 perm/sec)   p_kst 3.253796e-06   p_cons 5.851106e-02   p_joint 3.036876e-06

Joint ci ratio: 1.012138e+00	ci left: 1.656696e-06	ci right 5.084328e-06	k: 14	n:4620000
Cons ci ratio: 7.315908e-03	ci left: 5.829330e-02	ci right 5.872154e-02	k: 270303	n:4620000
KS ci ratio: 9.799982e-01	ci left: 1.817184e-06	ci right 5.355020e-06	k: 15	n:4620000
BTNL8   4620000 perm   10411 sec   (444 perm/sec)   p_kst 3.246753e-06   p_cons 5.850714e-02   p_joint 3.030303e-06

Joint ci ratio: 1.012138e+00	ci left: 1.653118e-06	ci right 5.073347e-06	k: 14	n:4630000
Cons ci ratio: 7.307460e-03	ci left: 5.830171e-02	ci right 5.872951e-02	k: 270926	n:4630000
KS ci ratio: 9.799982e-01	ci left: 1.813259e-06	ci right 5.343454e-06	k: 15	n:4630000
BTNL8   4630000 perm   10465 sec   (442 perm/sec)   p_kst 3.239741e-06   p_cons 5.851533e-02   p_joint 3.023758e-06

Joint ci ratio: 1.012138e+00	ci left: 1.649555e-06	ci right 5.062413e-06	k: 14	n:4640000
Cons ci ratio: 7.300298e-03	ci left: 5.829115e-02	ci right 5.871846e-02	k: 271461	n:4640000
KS ci ratio: 9.799982e-01	ci left: 1.809352e-06	ci right 5.331938e-06	k: 15	n:4640000
BTNL8   4640000 perm   10511 sec   (441 perm/sec)   p_kst 3.232759e-06   p_cons 5.850453e-02   p_joint 3.017241e-06

Joint ci ratio: 1.012138e+00	ci left: 1.646007e-06	ci right 5.051526e-06	k: 14	n:4650000
Cons ci ratio: 7.292188e-03	ci left: 5.829523e-02	ci right 5.872209e-02	k: 272064	n:4650000
KS ci ratio: 9.799982e-01	ci left: 1.805460e-06	ci right 5.320472e-06	k: 15	n:4650000
BTNL8   4650000 perm   10560 sec   (440 perm/sec)   p_kst 3.225806e-06   p_cons 5.850839e-02   p_joint 3.010753e-06

Joint ci ratio: 1.012138e+00	ci left: 1.642475e-06	ci right 5.040686e-06	k: 14	n:4660000
Cons ci ratio: 7.283708e-03	ci left: 5.830530e-02	ci right 5.873173e-02	k: 272695	n:4660000
KS ci ratio: 9.799982e-01	ci left: 1.801586e-06	ci right 5.309054e-06	k: 15	n:4660000
BTNL8   4660000 perm   10606 sec   (439 perm/sec)   p_kst 3.218884e-06   p_cons 5.851824e-02   p_joint 3.004292e-06

Joint ci ratio: 1.012138e+00	ci left: 1.638958e-06	ci right 5.029892e-06	k: 14	n:4670000
Cons ci ratio: 7.275597e-03	ci left: 5.831019e-02	ci right 5.873618e-02	k: 273302	n:4670000
KS ci ratio: 9.799982e-01	ci left: 1.797728e-06	ci right 5.297686e-06	k: 15	n:4670000
BTNL8   4670000 perm   10657 sec   (438 perm/sec)   p_kst 3.211991e-06   p_cons 5.852291e-02   p_joint 2.997859e-06

Joint ci ratio: 1.481619e+00	ci left: 4.704904e-07	ci right 2.790484e-06	k: 6	n:4680000
Cons ci ratio: 7.267175e-03	ci left: 5.832018e-02	ci right 5.874575e-02	k: 273933	n:4680000
KS ci ratio: 9.799982e-01	ci left: 1.793887e-06	ci right 5.286366e-06	k: 15	n:4680000
BTNL8   4680000 perm   10706 sec   (437 perm/sec)   p_kst 3.205128e-06   p_cons 5.853269e-02   p_joint 1.282051e-06

Joint ci ratio: 1.481619e+00	ci left: 4.694872e-07	ci right 2.784534e-06	k: 6	n:4690000
Cons ci ratio: 7.259386e-03	ci left: 5.832097e-02	ci right 5.874610e-02	k: 274521	n:4690000
KS ci ratio: 9.799982e-01	ci left: 1.790062e-06	ci right 5.275094e-06	k: 15	n:4690000
BTNL8   4690000 perm   10749 sec   (436 perm/sec)   p_kst 3.198294e-06   p_cons 5.853326e-02   p_joint 1.279318e-06

Joint ci ratio: 1.481619e+00	ci left: 4.684883e-07	ci right 2.778609e-06	k: 6	n:4700000
Cons ci ratio: 7.251636e-03	ci left: 5.832155e-02	ci right 5.874622e-02	k: 275108	n:4700000
KS ci ratio: 9.799982e-01	ci left: 1.786253e-06	ci right 5.263871e-06	k: 15	n:4700000
BTNL8   4700000 perm   10800 sec   (435 perm/sec)   p_kst 3.191489e-06   p_cons 5.853362e-02   p_joint 1.276596e-06

Joint ci ratio: 1.481619e+00	ci left: 4.674936e-07	ci right 2.772710e-06	k: 6	n:4710000
Cons ci ratio: 7.243896e-03	ci left: 5.832234e-02	ci right 5.874656e-02	k: 275696	n:4710000
KS ci ratio: 9.799982e-01	ci left: 1.782461e-06	ci right 5.252695e-06	k: 15	n:4710000
BTNL8   4710000 perm   10851 sec   (434 perm/sec)   p_kst 3.184713e-06   p_cons 5.853418e-02   p_joint 1.273885e-06

Joint ci ratio: 1.481619e+00	ci left: 4.665032e-07	ci right 2.766836e-06	k: 6	n:4720000
Cons ci ratio: 7.236084e-03	ci left: 5.832461e-02	ci right 5.874839e-02	k: 276291	n:4720000
KS ci ratio: 9.799982e-01	ci left: 1.778685e-06	ci right 5.241566e-06	k: 15	n:4720000
BTNL8   4720000 perm   10897 sec   (433 perm/sec)   p_kst 3.177966e-06   p_cons 5.853623e-02   p_joint 1.271186e-06

Joint ci ratio: 1.481619e+00	ci left: 4.655169e-07	ci right 2.760986e-06	k: 6	n:4730000
Cons ci ratio: 7.228159e-03	ci left: 5.832898e-02	ci right 5.875232e-02	k: 276896	n:4730000
KS ci ratio: 9.799982e-01	ci left: 1.774924e-06	ci right 5.230485e-06	k: 15	n:4730000
BTNL8   4730000 perm   10946 sec   (432 perm/sec)   p_kst 3.171247e-06   p_cons 5.854038e-02   p_joint 1.268499e-06

Joint ci ratio: 1.481619e+00	ci left: 4.645348e-07	ci right 2.755161e-06	k: 6	n:4740000
Cons ci ratio: 7.220895e-03	ci left: 5.832364e-02	ci right 5.874652e-02	k: 277455	n:4740000
KS ci ratio: 9.799982e-01	ci left: 1.771180e-06	ci right 5.219450e-06	k: 15	n:4740000
BTNL8   4740000 perm   10994 sec   (431 perm/sec)   p_kst 3.164557e-06   p_cons 5.853481e-02   p_joint 1.265823e-06

Joint ci ratio: 1.481619e+00	ci left: 4.635568e-07	ci right 2.749361e-06	k: 6	n:4750000
Cons ci ratio: 7.213653e-03	ci left: 5.831833e-02	ci right 5.874074e-02	k: 278014	n:4750000
KS ci ratio: 9.799982e-01	ci left: 1.767451e-06	ci right 5.208462e-06	k: 15	n:4750000
BTNL8   4750000 perm   11043 sec   (430 perm/sec)   p_kst 3.157895e-06   p_cons 5.852926e-02   p_joint 1.263158e-06

Joint ci ratio: 1.481619e+00	ci left: 4.625830e-07	ci right 2.743585e-06	k: 6	n:4760000
Cons ci ratio: 7.206241e-03	ci left: 5.831597e-02	ci right 5.873793e-02	k: 278587	n:4760000
KS ci ratio: 9.799982e-01	ci left: 1.763738e-06	ci right 5.197520e-06	k: 15	n:4760000
BTNL8   4760000 perm   11093 sec   (429 perm/sec)   p_kst 3.151261e-06   p_cons 5.852668e-02   p_joint 1.260504e-06

Joint ci ratio: 1.481619e+00	ci left: 4.616132e-07	ci right 2.737833e-06	k: 6	n:4770000
Cons ci ratio: 7.199303e-03	ci left: 5.830672e-02	ci right 5.872820e-02	k: 279127	n:4770000
KS ci ratio: 9.799983e-01	ci left: 1.760040e-06	ci right 5.186623e-06	k: 15	n:4770000
BTNL8   4770000 perm   11142 sec   (428 perm/sec)   p_kst 3.144654e-06   p_cons 5.851719e-02   p_joint 1.257862e-06

Joint ci ratio: 1.481619e+00	ci left: 4.606475e-07	ci right 2.732106e-06	k: 6	n:4780000
Cons ci ratio: 7.191880e-03	ci left: 5.830523e-02	ci right 5.872627e-02	k: 279704	n:4780000
KS ci ratio: 9.507379e-01	ci left: 1.913261e-06	ci right 5.435768e-06	k: 16	n:4780000
BTNL8   4780000 perm   11191 sec   (427 perm/sec)   p_kst 3.347280e-06   p_cons 5.851548e-02   p_joint 1.255230e-06

Joint ci ratio: 1.481619e+00	ci left: 4.596858e-07	ci right 2.726402e-06	k: 6	n:4790000
Cons ci ratio: 7.184208e-03	ci left: 5.830792e-02	ci right 5.872852e-02	k: 280301	n:4790000
KS ci ratio: 9.507379e-01	ci left: 1.909267e-06	ci right 5.424420e-06	k: 16	n:4790000
BTNL8   4790000 perm   11241 sec   (426 perm/sec)   p_kst 3.340292e-06   p_cons 5.851795e-02   p_joint 1.252610e-06

Joint ci ratio: 1.481619e+00	ci left: 4.587281e-07	ci right 2.720722e-06	k: 6	n:4800000
Cons ci ratio: 7.176832e-03	ci left: 5.830643e-02	ci right 5.872660e-02	k: 280878	n:4800000
KS ci ratio: 9.507379e-01	ci left: 1.905289e-06	ci right 5.413119e-06	k: 16	n:4800000
BTNL8   4800000 perm   11289 sec   (425 perm/sec)   p_kst 3.333333e-06   p_cons 5.851625e-02   p_joint 1.250000e-06

Joint ci ratio: 1.481620e+00	ci left: 4.577744e-07	ci right 2.715065e-06	k: 6	n:4810000
Cons ci ratio: 7.168829e-03	ci left: 5.831492e-02	ci right 5.873467e-02	k: 281503	n:4810000
KS ci ratio: 9.507379e-01	ci left: 1.901328e-06	ci right 5.401865e-06	k: 16	n:4810000
BTNL8   4810000 perm   11339 sec   (424 perm/sec)   p_kst 3.326403e-06   p_cons 5.852453e-02   p_joint 1.247401e-06

Joint ci ratio: 1.481620e+00	ci left: 4.568247e-07	ci right 2.709432e-06	k: 6	n:4820000
Cons ci ratio: 7.161378e-03	ci left: 5.831530e-02	ci right 5.873461e-02	k: 282089	n:4820000
KS ci ratio: 9.507379e-01	ci left: 1.897383e-06	ci right 5.390658e-06	k: 16	n:4820000
BTNL8   4820000 perm   11389 sec   (423 perm/sec)   p_kst 3.319502e-06   p_cons 5.852469e-02   p_joint 1.244813e-06

Joint ci ratio: 1.481620e+00	ci left: 4.558789e-07	ci right 2.703823e-06	k: 6	n:4830000
Cons ci ratio: 7.154556e-03	ci left: 5.830637e-02	ci right 5.872522e-02	k: 282630	n:4830000
KS ci ratio: 9.507379e-01	ci left: 1.893455e-06	ci right 5.379497e-06	k: 16	n:4830000
BTNL8   4830000 perm   11441 sec   (422 perm/sec)   p_kst 3.312629e-06   p_cons 5.851553e-02   p_joint 1.242236e-06

Joint ci ratio: 1.481620e+00	ci left: 4.549370e-07	ci right 2.698236e-06	k: 6	n:4840000
Cons ci ratio: 7.147176e-03	ci left: 5.830634e-02	ci right 5.872476e-02	k: 283214	n:4840000
KS ci ratio: 9.507379e-01	ci left: 1.889543e-06	ci right 5.368382e-06	k: 16	n:4840000
BTNL8   4840000 perm   11493 sec   (421 perm/sec)   p_kst 3.305785e-06   p_cons 5.851529e-02   p_joint 1.239669e-06

Joint ci ratio: 1.481620e+00	ci left: 4.539989e-07	ci right 2.692673e-06	k: 6	n:4850000
Cons ci ratio: 7.140060e-03	ci left: 5.830262e-02	ci right 5.872059e-02	k: 283780	n:4850000
KS ci ratio: 9.507379e-01	ci left: 1.885647e-06	ci right 5.357314e-06	k: 16	n:4850000
BTNL8   4850000 perm   11547 sec   (420 perm/sec)   p_kst 3.298969e-06   p_cons 5.851134e-02   p_joint 1.237113e-06

Joint ci ratio: 1.481620e+00	ci left: 4.530648e-07	ci right 2.687133e-06	k: 6	n:4860000
Cons ci ratio: 7.133125e-03	ci left: 5.829644e-02	ci right 5.871396e-02	k: 284334	n:4860000
KS ci ratio: 9.507379e-01	ci left: 1.881767e-06	ci right 5.346290e-06	k: 16	n:4860000
BTNL8   4860000 perm   11599 sec   (419 perm/sec)   p_kst 3.292181e-06   p_cons 5.850494e-02   p_joint 1.234568e-06

Joint ci ratio: 1.481620e+00	ci left: 4.521345e-07	ci right 2.681615e-06	k: 6	n:4870000
Cons ci ratio: 7.125905e-03	ci left: 5.829500e-02	ci right 5.871209e-02	k: 284911	n:4870000
KS ci ratio: 9.507379e-01	ci left: 1.877903e-06	ci right 5.335312e-06	k: 16	n:4870000
BTNL8   4870000 perm   11653 sec   (418 perm/sec)   p_kst 3.285421e-06   p_cons 5.850329e-02   p_joint 1.232033e-06

Joint ci ratio: 1.481620e+00	ci left: 4.512080e-07	ci right 2.676120e-06	k: 6	n:4880000
Cons ci ratio: 7.118825e-03	ci left: 5.829173e-02	ci right 5.870838e-02	k: 285479	n:4880000
KS ci ratio: 9.507379e-01	ci left: 1.874055e-06	ci right 5.324379e-06	k: 16	n:4880000
BTNL8   4880000 perm   11706 sec   (417 perm/sec)   p_kst 3.278689e-06   p_cons 5.849980e-02   p_joint 1.229508e-06

Joint ci ratio: 1.481620e+00	ci left: 4.502853e-07	ci right 2.670647e-06	k: 6	n:4890000
Cons ci ratio: 7.110962e-03	ci left: 5.830093e-02	ci right 5.871718e-02	k: 286108	n:4890000
KS ci ratio: 9.507379e-01	ci left: 1.870222e-06	ci right 5.313491e-06	k: 16	n:4890000
BTNL8   4890000 perm   11759 sec   (416 perm/sec)   p_kst 3.271984e-06   p_cons 5.850879e-02   p_joint 1.226994e-06

Joint ci ratio: 1.481620e+00	ci left: 4.493663e-07	ci right 2.665197e-06	k: 6	n:4900000
Cons ci ratio: 7.104124e-03	ci left: 5.829460e-02	ci right 5.871041e-02	k: 286661	n:4900000
KS ci ratio: 9.507379e-01	ci left: 1.866406e-06	ci right 5.302647e-06	k: 16	n:4900000
BTNL8   4900000 perm   11814 sec   (415 perm/sec)   p_kst 3.265306e-06   p_cons 5.850224e-02   p_joint 1.224490e-06

Joint ci ratio: 1.481620e+00	ci left: 4.484511e-07	ci right 2.659769e-06	k: 6	n:4910000
Cons ci ratio: 7.096506e-03	ci left: 5.830071e-02	ci right 5.871611e-02	k: 287275	n:4910000
KS ci ratio: 9.507379e-01	ci left: 1.862604e-06	ci right 5.291847e-06	k: 16	n:4910000
BTNL8   4910000 perm   11865 sec   (414 perm/sec)   p_kst 3.258656e-06   p_cons 5.850815e-02   p_joint 1.221996e-06

Joint ci ratio: 1.481620e+00	ci left: 4.475396e-07	ci right 2.654363e-06	k: 6	n:4920000
Cons ci ratio: 7.089213e-03	ci left: 5.830212e-02	ci right 5.871710e-02	k: 287866	n:4920000
KS ci ratio: 9.507379e-01	ci left: 1.858819e-06	ci right 5.281092e-06	k: 16	n:4920000
BTNL8   4920000 perm   11918 sec   (413 perm/sec)   p_kst 3.252033e-06   p_cons 5.850935e-02   p_joint 1.219512e-06

Joint ci ratio: 1.481620e+00	ci left: 4.466318e-07	ci right 2.648979e-06	k: 6	n:4930000
Cons ci ratio: 7.082295e-03	ci left: 5.829806e-02	ci right 5.871260e-02	k: 288430	n:4930000
KS ci ratio: 9.239511e-01	ci left: 2.008749e-06	ci right 5.521018e-06	k: 17	n:4930000
BTNL8   4930000 perm   11970 sec   (412 perm/sec)   p_kst 3.448276e-06   p_cons 5.850507e-02   p_joint 1.217039e-06

Joint ci ratio: 1.481620e+00	ci left: 4.457277e-07	ci right 2.643616e-06	k: 6	n:4940000
Cons ci ratio: 7.074734e-03	ci left: 5.830432e-02	ci right 5.871847e-02	k: 289045	n:4940000
KS ci ratio: 9.239511e-01	ci left: 2.004683e-06	ci right 5.509842e-06	k: 17	n:4940000
BTNL8   4940000 perm   12029 sec   (411 perm/sec)   p_kst 3.441296e-06   p_cons 5.851113e-02   p_joint 1.214575e-06

Joint ci ratio: 1.481620e+00	ci left: 4.448272e-07	ci right 2.638276e-06	k: 6	n:4950000
Cons ci ratio: 7.067845e-03	ci left: 5.830047e-02	ci right 5.871419e-02	k: 289610	n:4950000
KS ci ratio: 9.239511e-01	ci left: 2.000633e-06	ci right 5.498711e-06	k: 17	n:4950000
BTNL8   4950000 perm   12081 sec   (410 perm/sec)   p_kst 3.434343e-06   p_cons 5.850707e-02   p_joint 1.212121e-06

Joint ci ratio: 1.481620e+00	ci left: 4.439304e-07	ci right 2.632957e-06	k: 6	n:4960000
Cons ci ratio: 7.060381e-03	ci left: 5.830590e-02	ci right 5.871921e-02	k: 290221	n:4960000
KS ci ratio: 9.239511e-01	ci left: 1.996599e-06	ci right 5.487625e-06	k: 17	n:4960000
BTNL8   4960000 perm   12128 sec   (409 perm/sec)   p_kst 3.427419e-06   p_cons 5.851230e-02   p_joint 1.209677e-06

Joint ci ratio: 1.481620e+00	ci left: 4.430372e-07	ci right 2.627659e-06	k: 6	n:4970000
Cons ci ratio: 7.053482e-03	ci left: 5.830287e-02	ci right 5.871576e-02	k: 290790	n:4970000
KS ci ratio: 9.239511e-01	ci left: 1.992582e-06	ci right 5.476583e-06	k: 17	n:4970000
BTNL8   4970000 perm   12177 sec   (408 perm/sec)   p_kst 3.420523e-06   p_cons 5.850905e-02   p_joint 1.207243e-06

Joint ci ratio: 1.481620e+00	ci left: 4.421476e-07	ci right 2.622382e-06	k: 6	n:4980000
Cons ci ratio: 7.046514e-03	ci left: 5.830125e-02	ci right 5.871372e-02	k: 291366	n:4980000
KS ci ratio: 9.239511e-01	ci left: 1.988581e-06	ci right 5.465586e-06	k: 17	n:4980000
BTNL8   4980000 perm   12230 sec   (407 perm/sec)   p_kst 3.413655e-06   p_cons 5.850723e-02   p_joint 1.204819e-06

Joint ci ratio: 1.481620e+00	ci left: 4.412615e-07	ci right 2.617127e-06	k: 6	n:4990000
Cons ci ratio: 7.039425e-03	ci left: 5.830184e-02	ci right 5.871390e-02	k: 291953	n:4990000
KS ci ratio: 9.239511e-01	ci left: 1.984596e-06	ci right 5.454633e-06	k: 17	n:4990000
BTNL8   4990000 perm   12281 sec   (406 perm/sec)   p_kst 3.406814e-06   p_cons 5.850762e-02   p_joint 1.202405e-06

Joint ci ratio: 1.481620e+00	ci left: 4.403790e-07	ci right 2.611893e-06	k: 6	n:5000000
Cons ci ratio: 7.031962e-03	ci left: 5.830862e-02	ci right 5.872029e-02	k: 292571	n:5000000
KS ci ratio: 9.239511e-01	ci left: 1.980627e-06	ci right 5.443724e-06	k: 17	n:5000000
BTNL8   5000000 perm   12332 sec   (405 perm/sec)   p_kst 3.400000e-06   p_cons 5.851420e-02   p_joint 1.200000e-06

Outputting figure to mutsig2_images.part000000000018/BTNL8.3_1691_5000000_3.4e-06_0.058514_1.2e-06.png
                gene_name: BTNL8
               theta_stop: 1.5 
                    nperm: 5000000 
                     p_ks: 3.40e-06 
        ci_ks_bounds_left: 1.98e-06 
       ci_ks_bounds_right: 5.44e-06 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.059 
                  p_joint: 1.20e-06 
     ci_joint_bounds_left: 4.40e-07 
    ci_joint_bounds_right: 2.61e-06 

Current progress: 65 percent done.
BZW2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.907576e-02	ci left: 2.965789e-01	ci right 3.147345e-01	k: 3056	n:10000
Cons ci ratio: 2.876884e-02	ci left: 6.404584e-01	ci right 6.592543e-01	k: 6499	n:10000
KS ci ratio: 6.468518e-02	ci left: 2.598323e-01	ci right 2.773027e-01	k: 2685	n:10000
BZW2   10000 perm   2 sec   (5060 perm/sec)   p_kst 2.685000e-01   p_cons 6.499000e-01   p_joint 3.056000e-01

Outputting figure to mutsig2_images.part000000000018/BZW2.3_1304_10000_0.2685_0.6499_0.3056.png
                gene_name: BZW2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 67 percent done.
C10orf119
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.906570e-02	ci left: 1.894406e-01	ci right 2.051361e-01	k: 1972	n:10000
Cons ci ratio: 1.261899e-01	ci left: 8.242097e-02	ci right 9.362038e-02	k: 879	n:10000
KS ci ratio: 7.302283e-02	ci left: 2.154651e-01	ci right 2.318962e-01	k: 2236	n:10000
C10orf119   10000 perm   2 sec   (4829 perm/sec)   p_kst 2.236000e-01   p_cons 8.790000e-02   p_joint 1.972000e-01

Joint ci ratio: 6.296070e-02	ci left: 1.572142e-01	ci right 1.674842e-01	k: 3246	n:20000
Cons ci ratio: 9.091253e-02	ci left: 8.117049e-02	ci right 8.895064e-02	k: 1700	n:20000
KS ci ratio: 5.141350e-02	ci left: 2.193766e-01	ci right 2.310034e-01	k: 4503	n:20000
C10orf119   20000 perm   5 sec   (4097 perm/sec)   p_kst 2.251500e-01   p_cons 8.500000e-02   p_joint 1.623000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf119.3_1993_20000_0.22515_0.085_0.1623.png
                gene_name: C10orf119
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 70 percent done.
C10orf28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.995464e-02	ci left: 6.217570e-01	ci right 6.407665e-01	k: 6313	n:10000
Cons ci ratio: 5.975051e-02	ci left: 2.918206e-01	ci right 3.098956e-01	k: 3008	n:10000
KS ci ratio: 1.089973e-02	ci left: 9.230676e-01	ci right 9.332812e-01	k: 9283	n:10000
C10orf28   10000 perm   2 sec   (4684 perm/sec)   p_kst 9.283000e-01   p_cons 3.008000e-01   p_joint 6.313000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf28.3_2361_10000_0.9283_0.3008_0.6313.png
                gene_name: C10orf28
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 72 percent done.
C10orf81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.254207e-02	ci left: 4.492961e-01	ci right 4.689277e-01	k: 4591	n:10000
Cons ci ratio: 4.208421e-03	ci left: 9.864298e-01	ci right 9.906784e-01	k: 9887	n:10000
KS ci ratio: 6.422738e-02	ci left: 2.626030e-01	ci right 2.801304e-01	k: 2713	n:10000
C10orf81   10000 perm   2 sec   (6308 perm/sec)   p_kst 2.713000e-01   p_cons 9.887000e-01   p_joint 4.591000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf81.3_1136_10000_0.2713_0.9887_0.4591.png
                gene_name: C10orf81
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 74 percent done.
C10orf88
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.874877e-02	ci left: 3.830114e-01	ci right 4.022512e-01	k: 3926	n:10000
Cons ci ratio: 1.209850e-01	ci left: 8.922438e-02	ci right 1.008128e-01	k: 949	n:10000
KS ci ratio: 2.550841e-02	ci left: 6.934318e-01	ci right 7.114501e-01	k: 7025	n:10000
C10orf88   10000 perm   2 sec   (5088 perm/sec)   p_kst 7.025000e-01   p_cons 9.490000e-02   p_joint 3.926000e-01

Joint ci ratio: 4.107020e-02	ci left: 3.064765e-01	ci right 3.193779e-01	k: 6258	n:20000
Cons ci ratio: 8.656147e-02	ci left: 8.896023e-02	ci right 9.705854e-02	k: 1859	n:20000
KS ci ratio: 1.815206e-02	ci left: 6.934444e-01	ci right 7.061975e-01	k: 13997	n:20000
C10orf88   20000 perm   4 sec   (4656 perm/sec)   p_kst 6.998500e-01   p_cons 9.295000e-02   p_joint 3.129000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf88.3_1362_20000_0.69985_0.09295_0.3129.png
                gene_name: C10orf88
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 76 percent done.
BTN2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.624928e-02	ci left: 8.463146e-01	ci right 8.602789e-01	k: 8534	n:10000
Cons ci ratio: 2.446874e-02	ci left: 7.106829e-01	ci right 7.283891e-01	k: 7196	n:10000
KS ci ratio: 7.612086e-02	ci left: 2.015594e-01	ci right 2.176102e-01	k: 2095	n:10000
BTN2A1   10000 perm   2 sec   (5040 perm/sec)   p_kst 2.095000e-01   p_cons 7.196000e-01   p_joint 8.534000e-01

Outputting figure to mutsig2_images.part000000000018/BTN2A1.2_1639_10000_0.2095_0.7196_0.8534.png
                gene_name: BTN2A1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 78 percent done.
BUB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.032447e-02	ci left: 9.301971e-01	ci right 9.399476e-01	k: 9352	n:10000
Cons ci ratio: 4.334736e-02	ci left: 4.400155e-01	ci right 4.596137e-01	k: 4498	n:10000
KS ci ratio: 4.038788e-02	ci left: 4.751602e-01	ci right 4.948486e-01	k: 4850	n:10000
BUB3   10000 perm   2 sec   (5917 perm/sec)   p_kst 4.850000e-01   p_cons 4.498000e-01   p_joint 9.352000e-01

Outputting figure to mutsig2_images.part000000000018/BUB3.2_1029_10000_0.485_0.4498_0.9352.png
                gene_name: BUB3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 80 percent done.
C10orf2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.956641e-02	ci left: 2.931092e-01	ci right 3.112062e-01	k: 3021	n:10000
Cons ci ratio: 6.174011e-02	ci left: 2.783450e-01	ci right 2.961790e-01	k: 2872	n:10000
KS ci ratio: 5.326853e-02	ci left: 3.418387e-01	ci right 3.606481e-01	k: 3512	n:10000
C10orf2   10000 perm   2 sec   (4933 perm/sec)   p_kst 3.512000e-01   p_cons 2.872000e-01   p_joint 3.021000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf2.2_2090_10000_0.3512_0.2872_0.3021.png
                gene_name: C10orf2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 83 percent done.
C10orf58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.803680e-02	ci left: 8.177134e-01	ci right 8.326966e-01	k: 8253	n:10000
Cons ci ratio: 3.838735e-02	ci left: 5.005505e-01	ci right 5.202435e-01	k: 5104	n:10000
KS ci ratio: 6.515890e-03	ci left: 9.698435e-01	ci right 9.762769e-01	k: 9732	n:10000
C10orf58   10000 perm   1 sec   (6669 perm/sec)   p_kst 9.732000e-01   p_cons 5.104000e-01   p_joint 8.253000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf58.2_710_10000_0.9732_0.5104_0.8253.png
                gene_name: C10orf58
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 85 percent done.
C10orf68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.864176e-03	ci left: 9.751447e-01	ci right 9.809722e-01	k: 9782	n:10000
Cons ci ratio: 2.633479e-02	ci left: 6.798232e-01	ci right 6.980666e-01	k: 6890	n:10000
KS ci ratio: 2.147867e-02	ci left: 7.607128e-01	ci right 7.773302e-01	k: 7691	n:10000
C10orf68   10000 perm   2 sec   (5414 perm/sec)   p_kst 7.691000e-01   p_cons 6.890000e-01   p_joint 9.782000e-01

Outputting figure to mutsig2_images.part000000000018/C10orf68.2_1967_10000_0.7691_0.689_0.9782.png
                gene_name: C10orf68
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 87 percent done.
C10orf93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.887162e-02	ci left: 3.818169e-01	ci right 4.010464e-01	k: 3914	n:10000
KS ci ratio: 3.097309e-02	ci left: 6.059831e-01	ci right 6.251495e-01	k: 6156	n:10000
C10orf93   10000 perm   2 sec   (6384 perm/sec)   p_kst 6.156000e-01   p_cons 3.914000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C10orf93.2_1254_10000_0.6156_0.3914_1.png
                gene_name: C10orf93
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
C11orf16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.774222e-02	ci left: 8.224919e-01	ci right 8.373154e-01	k: 8300	n:10000
KS ci ratio: 1.522923e-02	ci left: 8.621274e-01	ci right 8.754569e-01	k: 8689	n:10000
C11orf16   10000 perm   2 sec   (5149 perm/sec)   p_kst 8.689000e-01   p_cons 8.300000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C11orf16.2_1424_10000_0.8689_0.83_1.png
                gene_name: C11orf16
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
C11orf17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.619358e-02	ci left: 6.821411e-01	ci right 7.003474e-01	k: 6913	n:10000
KS ci ratio: 2.787044e-02	ci left: 6.548469e-01	ci right 6.734574e-01	k: 6642	n:10000
C11orf17   10000 perm   2 sec   (5800 perm/sec)   p_kst 6.642000e-01   p_cons 6.913000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C11orf17.2_653_10000_0.6642_0.6913_1.png
                gene_name: C11orf17
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
C11orf24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.202320e-02	ci left: 5.900191e-01	ci right 6.093228e-01	k: 5997	n:10000
Cons ci ratio: 2.789543e-02	ci left: 6.544443e-01	ci right 6.730602e-01	k: 6638	n:10000
KS ci ratio: 6.486675e-02	ci left: 2.587439e-01	ci right 2.761918e-01	k: 2674	n:10000
C11orf24   10000 perm   2 sec   (6430 perm/sec)   p_kst 2.674000e-01   p_cons 6.638000e-01   p_joint 5.997000e-01

Outputting figure to mutsig2_images.part000000000018/C11orf24.2_1358_10000_0.2674_0.6638_0.5997.png
                gene_name: C11orf24
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 96 percent done.
C11orf40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.075182e-02	ci left: 9.249261e-01	ci right 9.350217e-01	k: 9301	n:10000
Cons ci ratio: 1.735119e-02	ci left: 8.287986e-01	ci right 8.434050e-01	k: 8362	n:10000
KS ci ratio: 5.967958e-02	ci left: 2.923162e-01	ci right 3.103997e-01	k: 3013	n:10000
C11orf40   10000 perm   1 sec   (6959 perm/sec)   p_kst 3.013000e-01   p_cons 8.362000e-01   p_joint 9.301000e-01

Outputting figure to mutsig2_images.part000000000018/C11orf40.2_670_10000_0.3013_0.8362_0.9301.png
                gene_name: C11orf40
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.94 

Current progress: 98 percent done.
C11orf53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.732628e-02	ci left: 5.145559e-01	ci right 5.342298e-01	k: 5244	n:10000
KS ci ratio: 6.029456e-02	ci left: 2.880544e-01	ci right 3.060640e-01	k: 2970	n:10000
C11orf53   10000 perm   2 sec   (6028 perm/sec)   p_kst 2.970000e-01   p_cons 5.244000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000018/C11orf53.2_723_10000_0.297_0.5244_1.png
                gene_name: C11orf53
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000018
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 18 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1538>
Subject: Job 9893843: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1538>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000019> was used as the working directory.
Started at Fri Oct  5 23:54:55 2012
Results reported at Sat Oct  6 00:25:48 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000019.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000019.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 19  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000019.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1975.70 sec.
    Max Memory :      3606 MB
    Max Swap   :      5876 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
19
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 19
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 19: processing genes 1624 - 1713
Calculating significance of each gene.
Using projection method.
1624	C11orf58	1
1625	C11orf59	1
1626	C11orf61	8.781452e-01
1627	C11orf63	3.330852e-02
1628	C11orf65	2.640510e-01
1629	C11orf66	4.036783e-01
1630	C11orf67	1
1631	C11orf68	1
1632	C11orf70	1
1633	C11orf71	5.437931e-01
1634	C11orf73	5.614405e-01
1635	C11orf74	4.594222e-01
1636	C11orf75	1
1637	C11orf80	2.964148e-01
1638	C11orf82	2.748249e-01
1639	C11orf83	1
1640	C11orf84	1
1641	C11orf85	3.002822e-01
1642	C11orf87	8.137630e-02
1643	C11orf88	1
1644	C11orf9	9.539208e-01
1645	C11orf92	3.153312e-01
1646	C11orf94	1
1647	C12orf10	1
1648	C12orf11	1.968348e-01
1649	C12orf12	3.040983e-01
1650	C12orf23	1
1651	C12orf24	4.127332e-01
1652	C12orf26	6.035690e-01
1653	C12orf29	6.016815e-02
1654	C12orf34	1
1655	C12orf35	6.762287e-01
1656	C12orf36	1
1657	C12orf39	3.795993e-01
1658	C12orf4	2.256847e-01
1659	C12orf40	4.210432e-01
1660	C12orf41	6.466715e-01
1661	C12orf42	1.770721e-02
1662	C12orf43	1
1663	C12orf44	1
1664	C12orf45	3.271916e-01
1665	C12orf48	5.382498e-01
1666	C12orf49	1
1667	C12orf5	1
1668	C12orf50	5.258811e-01
1669	C12orf51	6.898772e-01
1670	C12orf52	6.168364e-01
1671	C12orf53	6.196214e-01
1672	C12orf54	2.028978e-03
1673	C12orf56	4.031259e-01
1674	C12orf57	4.228238e-01
1675	C12orf59	3.238204e-02
1676	C12orf60	1
1677	C12orf61	1
1678	C12orf62	1
1679	C12orf63	9.930533e-01
1680	C12orf64	1
1681	C12orf65	1
1682	C12orf66	8.274891e-01
1683	C12orf68	3.790035e-01
1684	C12orf69	5.331370e-01
1685	C12orf71	6.002335e-01
1686	C12orf72	1
1687	C12orf74	1
1688	C12orf76	3.394686e-01
1689	C12orf77	1
1690	C13orf1	4.145698e-01
1691	C13orf15	1
1692	C13orf16	2.299332e-01
1693	C13orf18	2.467278e-01
1694	C13orf23	7.589879e-01
1695	C13orf26	4.068484e-01
1696	C13orf27	8.628400e-02
1697	C13orf28	3.685177e-01
1698	C13orf30	1
1699	C13orf31	5.271484e-01
1700	C13orf33	6.014223e-01
1701	C13orf34	4.534700e-01
1702	C13orf35	1
1703	C13orf36	1.114627e-01
1704	C13orf37	1
1705	C13orf39	1.540780e-01
1706	C14orf1	4.886192e-01
1707	C14orf101	2.343127e-01
1708	C14orf102	5.474251e-01
1709	C14orf104	7.978244e-01
1710	C14orf105	4.786878e-01
1711	C14orf106	2.952969e-02
1712	C14orf109	1
1713	C14orf115	1
Done

Running MutSig 2:
Scatter job 19: processing genes 1624 - 1713
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C12orf51
Processing conservation and coverage...
76% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.901113e-02	ci left: 1.287509e-01	ci right 1.422622e-01	k: 1354	n:10000
Cons ci ratio: 1.595841e-01	ci left: 5.234307e-02	ci right 6.151717e-02	k: 568	n:10000
KS ci ratio: 3.281605e-02	ci left: 5.781784e-01	ci right 5.975704e-01	k: 5879	n:10000
C12orf51   10000 perm   5 sec   (1910 perm/sec)   p_kst 5.879000e-01   p_cons 5.680000e-02   p_joint 1.354000e-01

Joint ci ratio: 6.734817e-02	ci left: 1.399499e-01	ci right 1.497536e-01	k: 2896	n:20000
Cons ci ratio: 1.204400e-01	ci left: 4.726291e-02	ci right 5.336867e-02	k: 1005	n:20000
KS ci ratio: 2.357159e-02	ci left: 5.734242e-01	ci right 5.871525e-01	k: 11606	n:20000
C12orf51   20000 perm   14 sec   (1382 perm/sec)   p_kst 5.803000e-01   p_cons 5.025000e-02   p_joint 1.448000e-01

Joint ci ratio: 5.899165e-02	ci left: 1.245023e-01	ci right 1.321032e-01	k: 3848	n:30000
Cons ci ratio: 9.528656e-02	ci left: 5.084996e-02	ci right 5.597030e-02	k: 1601	n:30000
KS ci ratio: 1.893997e-02	ci left: 5.825056e-01	ci right 5.936773e-01	k: 17643	n:30000
C12orf51   30000 perm   21 sec   (1454 perm/sec)   p_kst 5.881000e-01   p_cons 5.336667e-02   p_joint 1.282667e-01

Outputting figure to mutsig2_images.part000000000019/C12orf51.17_13037_30000_0.5881_0.053367_0.12827.png
                gene_name: C12orf51
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 2 percent done.
C14orf106
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.818818e-02	ci left: 5.031509e-01	ci right 5.228415e-01	k: 5130	n:10000
Cons ci ratio: 1.653384e-02	ci left: 8.418309e-01	ci right 8.559652e-01	k: 8490	n:10000
KS ci ratio: 5.585553e-02	ci left: 3.206853e-01	ci right 3.392138e-01	k: 3299	n:10000
C14orf106   10000 perm   2 sec   (4176 perm/sec)   p_kst 3.299000e-01   p_cons 8.490000e-01   p_joint 5.130000e-01

Outputting figure to mutsig2_images.part000000000019/C14orf106.11_3463_10000_0.3299_0.849_0.513.png
                gene_name: C14orf106
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 5 percent done.
C12orf35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.211153e-02	ci left: 1.779240e-01	ci right 1.932596e-01	k: 1855	n:10000
Cons ci ratio: 1.925331e-01	ci left: 3.595770e-02	ci right 4.371330e-02	k: 397	n:10000
KS ci ratio: 1.836726e-02	ci left: 8.123272e-01	ci right 8.274859e-01	k: 8200	n:10000
C12orf35   10000 perm   3 sec   (3746 perm/sec)   p_kst 8.200000e-01   p_cons 3.970000e-02   p_joint 1.855000e-01

Joint ci ratio: 6.855648e-02	ci left: 1.356621e-01	ci right 1.453426e-01	k: 2809	n:20000
Cons ci ratio: 1.362337e-01	ci left: 3.703607e-02	ci right 4.249877e-02	k: 794	n:20000
KS ci ratio: 1.279103e-02	ci left: 8.191055e-01	ci right 8.297000e-01	k: 16489	n:20000
C12orf35   20000 perm   6 sec   (3248 perm/sec)   p_kst 8.244500e-01   p_cons 3.970000e-02   p_joint 1.404500e-01

Joint ci ratio: 5.491230e-02	ci left: 1.411983e-01	ci right 1.492039e-01	k: 4355	n:30000
Cons ci ratio: 1.127958e-01	ci left: 3.651309e-02	ci right 4.091016e-02	k: 1160	n:30000
KS ci ratio: 1.043468e-02	ci left: 8.203494e-01	ci right 8.289876e-01	k: 24741	n:30000
C12orf35   30000 perm   9 sec   (3163 perm/sec)   p_kst 8.247000e-01   p_cons 3.866667e-02   p_joint 1.451667e-01

Joint ci ratio: 3.880902e-02	ci left: 1.992659e-01	ci right 2.071772e-01	k: 8128	n:40000
Cons ci ratio: 9.503326e-02	ci left: 3.885780e-02	ci right 4.275922e-02	k: 1631	n:40000
KS ci ratio: 9.106874e-03	ci left: 8.186693e-01	ci right 8.261838e-01	k: 32898	n:40000
C12orf35   40000 perm   13 sec   (3025 perm/sec)   p_kst 8.224500e-01   p_cons 4.077500e-02   p_joint 2.032000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf35.10_5256_40000_0.82245_0.040775_0.2032.png
                gene_name: C12orf35
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 8 percent done.
C11orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.188542e-02	ci left: 2.208930e-01	ci right 2.374651e-01	k: 2291	n:10000
Cons ci ratio: 2.816456e-02	ci left: 6.501168e-01	ci right 6.687903e-01	k: 6595	n:10000
KS ci ratio: 1.546038e-01	ci left: 5.571306e-02	ci right 6.514503e-02	k: 603	n:10000
C11orf63   10000 perm   2 sec   (4878 perm/sec)   p_kst 6.030000e-02   p_cons 6.595000e-01   p_joint 2.291000e-01

Joint ci ratio: 8.058186e-02	ci left: 1.015206e-01	ci right 1.100944e-01	k: 2115	n:20000
Cons ci ratio: 2.009601e-02	ci left: 6.488167e-01	ci right 6.620381e-01	k: 13109	n:20000
KS ci ratio: 1.105463e-01	ci left: 5.587115e-02	ci right 6.245774e-02	k: 1182	n:20000
C11orf63   20000 perm   5 sec   (4379 perm/sec)   p_kst 5.910000e-02   p_cons 6.554500e-01   p_joint 1.057500e-01

Joint ci ratio: 5.906208e-02	ci left: 1.242390e-01	ci right 1.318332e-01	k: 3840	n:30000
Cons ci ratio: 1.650127e-02	ci left: 6.474818e-01	ci right 6.582885e-01	k: 19587	n:30000
KS ci ratio: 9.068307e-02	ci left: 5.596837e-02	ci right 6.131750e-02	k: 1758	n:30000
C11orf63   30000 perm   7 sec   (4021 perm/sec)   p_kst 5.860000e-02   p_cons 6.529000e-01   p_joint 1.280000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf63.7_2433_30000_0.0586_0.6529_0.128.png
                gene_name: C11orf63
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 10 percent done.
C12orf11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.034734e-01	ci left: 1.189689e-01	ci right 1.320501e-01	k: 1254	n:10000
Cons ci ratio: 9.401317e-02	ci left: 1.410934e-01	ci right 1.551123e-01	k: 1480	n:10000
KS ci ratio: 9.059204e-02	ci left: 1.505090e-01	ci right 1.648910e-01	k: 1576	n:10000
C12orf11   10000 perm   2 sec   (4897 perm/sec)   p_kst 1.576000e-01   p_cons 1.480000e-01   p_joint 1.254000e-01

Joint ci ratio: 7.159459e-02	ci left: 1.256636e-01	ci right 1.350442e-01	k: 2606	n:20000
Cons ci ratio: 6.695676e-02	ci left: 1.413795e-01	ci right 1.512236e-01	k: 2925	n:20000
KS ci ratio: 6.395096e-02	ci left: 1.530687e-01	ci right 1.632309e-01	k: 3162	n:20000
C12orf11   20000 perm   5 sec   (3769 perm/sec)   p_kst 1.581000e-01   p_cons 1.462500e-01   p_joint 1.303000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf11.7_2185_20000_0.1581_0.14625_0.1303.png
                gene_name: C12orf11
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 12 percent done.
C13orf18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.189480e-02	ci left: 3.537651e-01	ci right 3.727147e-01	k: 3632	n:10000
Cons ci ratio: 3.425194e-02	ci left: 5.572202e-01	ci right 5.767407e-01	k: 5670	n:10000
KS ci ratio: 6.317239e-02	ci left: 2.691358e-01	ci right 2.867938e-01	k: 2779	n:10000
C13orf18   10000 perm   2 sec   (4688 perm/sec)   p_kst 2.779000e-01   p_cons 5.670000e-01   p_joint 3.632000e-01

Outputting figure to mutsig2_images.part000000000019/C13orf18.7_2041_10000_0.2779_0.567_0.3632.png
                gene_name: C13orf18
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 15 percent done.
C14orf102
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.079719e-02	ci left: 1.499203e-01	ci right 1.642801e-01	k: 1570	n:10000
Cons ci ratio: 4.309433e-02	ci left: 4.429091e-01	ci right 4.625185e-01	k: 4527	n:10000
KS ci ratio: 1.032853e-01	ci left: 1.193599e-01	ci right 1.324588e-01	k: 1258	n:10000
C14orf102   10000 perm   2 sec   (4276 perm/sec)   p_kst 1.258000e-01   p_cons 4.527000e-01   p_joint 1.570000e-01

Joint ci ratio: 6.555871e-02	ci left: 1.466556e-01	ci right 1.566459e-01	k: 3032	n:20000
Cons ci ratio: 3.012976e-02	ci left: 4.514260e-01	ci right 4.652861e-01	k: 9167	n:20000
KS ci ratio: 7.449765e-02	ci left: 1.170516e-01	ci right 1.261587e-01	k: 2431	n:20000
C14orf102   20000 perm   5 sec   (3918 perm/sec)   p_kst 1.215500e-01   p_cons 4.583500e-01   p_joint 1.516000e-01

Outputting figure to mutsig2_images.part000000000019/C14orf102.7_3551_20000_0.12155_0.45835_0.1516.png
                gene_name: C14orf102
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 18 percent done.
C14orf101
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.905489e-02	ci left: 1.550240e-01	ci right 1.695733e-01	k: 1622	n:10000
Cons ci ratio: 4.464907e-02	ci left: 4.254529e-01	ci right 4.449849e-01	k: 4352	n:10000
KS ci ratio: 1.175301e-01	ci left: 9.418721e-02	ci right 1.060469e-01	k: 1000	n:10000
C14orf101   10000 perm   2 sec   (4808 perm/sec)   p_kst 1.000000e-01   p_cons 4.352000e-01   p_joint 1.622000e-01

Joint ci ratio: 7.064720e-02	ci left: 1.286671e-01	ci right 1.381397e-01	k: 2667	n:20000
Cons ci ratio: 3.249347e-02	ci left: 4.142941e-01	ci right 4.280289e-01	k: 8423	n:20000
KS ci ratio: 8.527848e-02	ci left: 9.146078e-02	ci right 9.965724e-02	k: 1910	n:20000
C14orf101   20000 perm   5 sec   (4222 perm/sec)   p_kst 9.550000e-02   p_cons 4.211500e-01   p_joint 1.333500e-01

Outputting figure to mutsig2_images.part000000000019/C14orf101.6_2188_20000_0.0955_0.42115_0.13335.png
                gene_name: C14orf101
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.100 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 20 percent done.
C11orf82
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.288571e-01	ci left: 7.921726e-02	ci right 9.022608e-02	k: 846	n:10000
Cons ci ratio: 7.295982e-02	ci left: 2.157611e-01	ci right 2.322000e-01	k: 2239	n:10000
KS ci ratio: 1.671973e-01	ci left: 4.772935e-02	ci right 5.653387e-02	k: 520	n:10000
C11orf82   10000 perm   2 sec   (4008 perm/sec)   p_kst 5.200000e-02   p_cons 2.239000e-01   p_joint 8.460000e-02

Joint ci ratio: 1.125313e-01	ci left: 5.397247e-02	ci right 6.045701e-02	k: 1143	n:20000
Cons ci ratio: 5.160577e-02	ci left: 2.180887e-01	ci right 2.296917e-01	k: 4477	n:20000
KS ci ratio: 1.193201e-01	ci left: 4.813723e-02	ci right 5.429407e-02	k: 1023	n:20000
C11orf82   20000 perm   5 sec   (3642 perm/sec)   p_kst 5.115000e-02   p_cons 2.238500e-01   p_joint 5.715000e-02

Joint ci ratio: 1.164992e-01	ci left: 3.424427e-02	ci right 3.851279e-02	k: 1090	n:30000
Cons ci ratio: 4.214821e-02	ci left: 2.190608e-01	ci right 2.285260e-01	k: 6713	n:30000
KS ci ratio: 9.646915e-02	ci left: 4.964467e-02	ci right 5.470917e-02	k: 1564	n:30000
C11orf82   30000 perm   8 sec   (3649 perm/sec)   p_kst 5.213333e-02   p_cons 2.237667e-01   p_joint 3.633333e-02

Joint ci ratio: 9.564589e-02	ci left: 3.836926e-02	ci right 4.224784e-02	k: 1611	n:40000
Cons ci ratio: 3.650674e-02	ci left: 2.196487e-01	ci right 2.278415e-01	k: 8949	n:40000
KS ci ratio: 8.217600e-02	ci left: 5.160889e-02	ci right 5.605616e-02	k: 2152	n:40000
C11orf82   40000 perm   11 sec   (3633 perm/sec)   p_kst 5.380000e-02   p_cons 2.237250e-01   p_joint 4.027500e-02

Outputting figure to mutsig2_images.part000000000019/C11orf82.5_3013_40000_0.0538_0.22373_0.040275.png
                gene_name: C11orf82
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.042 

Current progress: 22 percent done.
C12orf4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.658079e-02	ci left: 4.048206e-01	ci right 4.242292e-01	k: 4145	n:10000
Cons ci ratio: 1.146199e-02	ci left: 9.158488e-01	ci right 9.265043e-01	k: 9213	n:10000
KS ci ratio: 7.494614e-02	ci left: 2.066861e-01	ci right 2.228804e-01	k: 2147	n:10000
C12orf4   10000 perm   2 sec   (5835 perm/sec)   p_kst 2.147000e-01   p_cons 9.213000e-01   p_joint 4.145000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf4.5_1711_10000_0.2147_0.9213_0.4145.png
                gene_name: C12orf4
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 25 percent done.
C12orf42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.098851e-02	ci left: 7.689140e-01	ci right 7.853243e-01	k: 7772	n:10000
KS ci ratio: 1.471734e-02	ci left: 8.698917e-01	ci right 8.828882e-01	k: 8765	n:10000
C12orf42   10000 perm   2 sec   (6145 perm/sec)   p_kst 8.765000e-01   p_cons 7.772000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C12orf42.5_1103_10000_0.8765_0.7772_1.png
                gene_name: C12orf42
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
C11orf87
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.122464e-02	ci left: 7.649647e-01	ci right 7.814758e-01	k: 7733	n:10000
Cons ci ratio: 4.247362e-02	ci left: 4.500946e-01	ci right 4.697287e-01	k: 4599	n:10000
KS ci ratio: 2.519152e-02	ci left: 6.986761e-01	ci right 7.166028e-01	k: 7077	n:10000
C11orf87   10000 perm   2 sec   (6445 perm/sec)   p_kst 7.077000e-01   p_cons 4.599000e-01   p_joint 7.733000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf87.4_598_10000_0.7077_0.4599_0.7733.png
                gene_name: C11orf87
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 30 percent done.
C12orf12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.282482e-03	ci left: 9.859942e-01	ci right 9.903144e-01	k: 9883	n:10000
KS ci ratio: 6.197770e-03	ci left: 9.724899e-01	ci right 9.786288e-01	k: 9757	n:10000
C12orf12   10000 perm   2 sec   (5767 perm/sec)   p_kst 9.757000e-01   p_cons 9.883000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C12orf12.4_1225_10000_0.9757_0.9883_1.png
                gene_name: C12orf12
               theta_stop: 0.0062 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
C12orf40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.411732e-02	ci left: 4.313368e-01	ci right 4.508976e-01	k: 4411	n:10000
Cons ci ratio: 2.173246e-02	ci left: 7.564621e-01	ci right 7.731834e-01	k: 7649	n:10000
KS ci ratio: 8.597494e-02	ci left: 1.646498e-01	ci right 1.795417e-01	k: 1720	n:10000
C12orf40   10000 perm   2 sec   (4777 perm/sec)   p_kst 1.720000e-01   p_cons 7.649000e-01   p_joint 4.411000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf40.4_2011_10000_0.172_0.7649_0.4411.png
                gene_name: C12orf40
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 35 percent done.
C12orf54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.556918e-02	ci left: 2.545889e-01	ci right 2.719492e-01	k: 2632	n:10000
Cons ci ratio: 3.287702e-02	ci left: 5.772755e-01	ci right 5.966738e-01	k: 5870	n:10000
KS ci ratio: 9.880038e-02	ci left: 1.292403e-01	ci right 1.427725e-01	k: 1359	n:10000
C12orf54   10000 perm   2 sec   (6331 perm/sec)   p_kst 1.359000e-01   p_cons 5.870000e-01   p_joint 2.632000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf54.4_412_10000_0.1359_0.587_0.2632.png
                gene_name: C12orf54
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 38 percent done.
C12orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.349556e-01	ci left: 7.252675e-02	ci right 8.312075e-02	k: 777	n:10000
Cons ci ratio: 2.716280e-01	ci left: 1.762636e-02	ci right 2.325787e-02	k: 203	n:10000
KS ci ratio: 4.332986e-02	ci left: 4.402151e-01	ci right 4.598141e-01	k: 4500	n:10000
C12orf63   10000 perm   2 sec   (4700 perm/sec)   p_kst 4.500000e-01   p_cons 2.030000e-02   p_joint 7.770000e-02

Joint ci ratio: 9.195033e-02	ci left: 7.945708e-02	ci right 8.716457e-02	k: 1665	n:20000
Cons ci ratio: 1.955271e-01	ci left: 1.777152e-02	ci right 2.166988e-02	k: 393	n:20000
KS ci ratio: 3.050563e-02	ci left: 4.452846e-01	ci right 4.591293e-01	k: 9044	n:20000
C12orf63   20000 perm   5 sec   (4208 perm/sec)   p_kst 4.522000e-01   p_cons 1.965000e-02   p_joint 8.325000e-02

Joint ci ratio: 1.009003e-01	ci left: 4.547813e-02	ci right 5.034324e-02	k: 1436	n:30000
Cons ci ratio: 1.602024e-01	ci left: 1.799732e-02	ci right 2.116335e-02	k: 586	n:30000
KS ci ratio: 2.502440e-02	ci left: 4.442590e-01	ci right 4.555507e-01	k: 13497	n:30000
C12orf63   30000 perm   7 sec   (4032 perm/sec)   p_kst 4.499000e-01   p_cons 1.953333e-02   p_joint 4.786667e-02

Joint ci ratio: 8.880349e-02	ci left: 4.438357e-02	ci right 4.853259e-02	k: 1857	n:40000
Cons ci ratio: 1.371109e-01	ci left: 1.865045e-02	ci right 2.141984e-02	k: 800	n:40000
KS ci ratio: 2.149454e-02	ci left: 4.490869e-01	ci right 4.588698e-01	k: 18159	n:40000
C12orf63   40000 perm   10 sec   (3907 perm/sec)   p_kst 4.539750e-01   p_cons 2.000000e-02   p_joint 4.642500e-02

Joint ci ratio: 7.098787e-02	ci left: 5.543590e-02	ci right 5.953567e-02	k: 2873	n:50000
Cons ci ratio: 1.219081e-01	ci left: 1.902359e-02	ci right 2.151254e-02	k: 1012	n:50000
KS ci ratio: 1.928587e-02	ci left: 4.480501e-01	ci right 4.567954e-01	k: 22621	n:50000
C12orf63   50000 perm   13 sec   (3810 perm/sec)   p_kst 4.524200e-01   p_cons 2.024000e-02   p_joint 5.746000e-02

Joint ci ratio: 6.177836e-02	ci left: 6.093736e-02	ci right 6.483839e-02	k: 3772	n:60000
Cons ci ratio: 1.115962e-01	ci left: 1.902439e-02	ci right 2.128902e-02	k: 1208	n:60000
KS ci ratio: 1.764783e-02	ci left: 4.472458e-01	ci right 4.552256e-01	k: 27074	n:60000
C12orf63   60000 perm   16 sec   (3734 perm/sec)   p_kst 4.512333e-01   p_cons 2.013333e-02   p_joint 6.286667e-02

Joint ci ratio: 6.111244e-02	ci left: 5.381523e-02	ci right 5.722173e-02	k: 3885	n:70000
Cons ci ratio: 1.039402e-01	ci left: 1.887822e-02	ci right 2.096184e-02	k: 1393	n:70000
KS ci ratio: 1.635215e-02	ci left: 4.471375e-01	ci right 4.545237e-01	k: 31558	n:70000
C12orf63   70000 perm   19 sec   (3660 perm/sec)   p_kst 4.508286e-01   p_cons 1.990000e-02   p_joint 5.550000e-02

Joint ci ratio: 5.340362e-02	ci left: 6.141241e-02	ci right 6.479436e-02	k: 5047	n:80000
Cons ci ratio: 9.637110e-02	ci left: 1.928512e-02	ci right 2.124988e-02	k: 1620	n:80000
KS ci ratio: 1.527882e-02	ci left: 4.479347e-01	ci right 4.548438e-01	k: 36111	n:80000
C12orf63   80000 perm   22 sec   (3593 perm/sec)   p_kst 4.513875e-01   p_cons 2.025000e-02   p_joint 6.308750e-02

Outputting figure to mutsig2_images.part000000000019/C12orf63.4_3698_80000_0.45139_0.02025_0.063088.png
                gene_name: C12orf63
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.065 

Current progress: 40 percent done.
C11orf66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.403691e-02	ci left: 3.353812e-01	ci right 3.541093e-01	k: 3447	n:10000
Cons ci ratio: 1.194625e-01	ci left: 9.136461e-02	ci right 1.030712e-01	k: 971	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
C11orf66   10000 perm   2 sec   (5124 perm/sec)   p_kst 1   p_cons 9.710000e-02   p_joint 3.447000e-01

Joint ci ratio: 3.444505e-02	ci left: 3.862220e-01	ci right 3.998091e-01	k: 7860	n:20000
Cons ci ratio: 8.643344e-02	ci left: 8.920534e-02	ci right 9.731335e-02	k: 1864	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
C11orf66   20000 perm   4 sec   (4962 perm/sec)   p_kst 1   p_cons 9.320000e-02   p_joint 3.930000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf66.3_1326_20000_1_0.0932_0.393.png
                gene_name: C11orf66
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 42 percent done.
C12orf26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.926549e-02	ci left: 1.281636e-01	ci right 1.416499e-01	k: 1348	n:10000
Cons ci ratio: 4.695702e-02	ci left: 4.009353e-01	ci right 4.203168e-01	k: 4106	n:10000
KS ci ratio: 1.397872e-01	ci left: 6.778282e-02	ci right 7.806763e-02	k: 728	n:10000
C12orf26   10000 perm   2 sec   (5424 perm/sec)   p_kst 7.280000e-02   p_cons 4.106000e-01   p_joint 1.348000e-01

Joint ci ratio: 4.605013e-02	ci left: 2.597863e-01	ci right 2.720818e-01	k: 5318	n:20000
Cons ci ratio: 3.335121e-02	ci left: 4.016762e-01	ci right 4.153504e-01	k: 8170	n:20000
KS ci ratio: 9.509900e-02	ci left: 7.456446e-02	ci right 8.205869e-02	k: 1565	n:20000
C12orf26   20000 perm   4 sec   (4647 perm/sec)   p_kst 7.825000e-02   p_cons 4.085000e-01   p_joint 2.659000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf26.3_1860_20000_0.07825_0.4085_0.2659.png
                gene_name: C12orf26
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 45 percent done.
C12orf29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.432188e-01	ci left: 2.522631e-03	ci right 4.980467e-03	k: 36	n:10000
Cons ci ratio: 7.202812e-02	ci left: 2.202021e-01	ci right 2.367564e-01	k: 2284	n:10000
KS ci ratio: 4.884054e-01	ci left: 4.844389e-03	ci right 8.053335e-03	k: 63	n:10000
C12orf29   10000 perm   2 sec   (4781 perm/sec)   p_kst 6.300000e-03   p_cons 2.284000e-01   p_joint 3.600000e-03

Joint ci ratio: 3.797244e-01	ci left: 4.295928e-03	ci right 6.351929e-03	k: 105	n:20000
Cons ci ratio: 5.242865e-02	ci left: 2.126902e-01	ci right 2.241917e-01	k: 4368	n:20000
KS ci ratio: 3.815379e-01	ci left: 4.250695e-03	ci right 6.297200e-03	k: 104	n:20000
C12orf29   20000 perm   4 sec   (4478 perm/sec)   p_kst 5.200000e-03   p_cons 2.184000e-01   p_joint 5.250000e-03

Joint ci ratio: 2.805235e-01	ci left: 5.560028e-03	ci right 7.404173e-03	k: 193	n:30000
Cons ci ratio: 4.257737e-02	ci left: 2.155877e-01	ci right 2.249999e-01	k: 6608	n:30000
KS ci ratio: 3.171422e-01	ci left: 4.264115e-03	ci right 5.900658e-03	k: 151	n:30000
C12orf29   30000 perm   7 sec   (4445 perm/sec)   p_kst 5.033333e-03   p_cons 2.202667e-01   p_joint 6.433333e-03

Joint ci ratio: 2.867557e-01	ci left: 3.983757e-03	ci right 5.339698e-03	k: 185	n:40000
Cons ci ratio: 3.695923e-02	ci left: 2.154269e-01	ci right 2.235638e-01	k: 8779	n:40000
KS ci ratio: 2.829597e-01	ci left: 4.099861e-03	ci right 5.473552e-03	k: 190	n:40000
C12orf29   40000 perm   9 sec   (4390 perm/sec)   p_kst 4.750000e-03   p_cons 2.194750e-01   p_joint 4.625000e-03

Joint ci ratio: 2.823551e-01	ci left: 3.298269e-03	ci right 4.400568e-03	k: 191	n:50000
Cons ci ratio: 3.294203e-02	ci left: 2.170513e-01	ci right 2.243411e-01	k: 11034	n:50000
KS ci ratio: 2.590132e-01	ci left: 3.969664e-03	ci right 5.168974e-03	k: 227	n:50000
C12orf29   50000 perm   12 sec   (4249 perm/sec)   p_kst 4.540000e-03   p_cons 2.206800e-01   p_joint 3.820000e-03

Joint ci ratio: 2.746620e-01	ci left: 2.919007e-03	ci right 3.863370e-03	k: 202	n:60000
Cons ci ratio: 3.015953e-02	ci left: 2.163757e-01	ci right 2.230181e-01	k: 13181	n:60000
KS ci ratio: 2.384683e-01	ci left: 3.948849e-03	ci right 5.033272e-03	k: 268	n:60000
C12orf29   60000 perm   14 sec   (4156 perm/sec)   p_kst 4.466667e-03   p_cons 2.196833e-01   p_joint 3.366667e-03

Joint ci ratio: 2.638688e-01	ci left: 2.728437e-03	ci right 3.570726e-03	k: 219	n:70000
Cons ci ratio: 2.795493e-02	ci left: 2.162251e-01	ci right 2.223696e-01	k: 15350	n:70000
KS ci ratio: 2.111394e-01	ci left: 4.382648e-03	ci right 5.430468e-03	k: 342	n:70000
C12orf29   70000 perm   17 sec   (4055 perm/sec)   p_kst 4.885714e-03   p_cons 2.192857e-01   p_joint 3.128571e-03

Joint ci ratio: 2.408594e-01	ci left: 2.902694e-03	ci right 3.708991e-03	k: 263	n:80000
Cons ci ratio: 2.611514e-02	ci left: 2.168722e-01	ci right 2.226232e-01	k: 17579	n:80000
KS ci ratio: 1.967479e-01	ci left: 4.451673e-03	ci right 5.434757e-03	k: 394	n:80000
C12orf29   80000 perm   20 sec   (4019 perm/sec)   p_kst 4.925000e-03   p_cons 2.197375e-01   p_joint 3.287500e-03

Joint ci ratio: 1.975572e-01	ci left: 3.925247e-03	ci right 4.796064e-03	k: 391	n:90000
Cons ci ratio: 2.464036e-02	ci left: 2.167772e-01	ci right 2.221964e-01	k: 19753	n:90000
KS ci ratio: 1.853648e-01	ci left: 4.486050e-03	ci right 5.412967e-03	k: 444	n:90000
C12orf29   90000 perm   23 sec   (3971 perm/sec)   p_kst 4.933333e-03   p_cons 2.194778e-01   p_joint 4.344444e-03

Joint ci ratio: 1.329384e-01	ci left: 8.046661e-03	ci right 9.202111e-03	k: 861	n:100000
Cons ci ratio: 2.335538e-02	ci left: 2.172166e-01	ci right 2.223597e-01	k: 21978	n:100000
KS ci ratio: 1.779340e-01	ci left: 4.400153e-03	ci right 5.268951e-03	k: 482	n:100000
C12orf29   100000 perm   26 sec   (3864 perm/sec)   p_kst 4.820000e-03   p_cons 2.197800e-01   p_joint 8.610000e-03

Joint ci ratio: 1.546210e-01	ci left: 5.359776e-03	ci right 6.266578e-03	k: 638	n:110000
Cons ci ratio: 2.227787e-02	ci left: 2.171927e-01	ci right 2.220948e-01	k: 24160	n:110000
KS ci ratio: 1.701854e-01	ci left: 4.391411e-03	ci right 5.216849e-03	k: 527	n:110000
C12orf29   110000 perm   29 sec   (3770 perm/sec)   p_kst 4.790909e-03   p_cons 2.196364e-01   p_joint 5.800000e-03

Joint ci ratio: 1.780061e-01	ci left: 3.666668e-03	ci right 4.390957e-03	k: 482	n:120000
Cons ci ratio: 2.134057e-02	ci left: 2.171193e-01	ci right 2.218110e-01	k: 26335	n:120000
KS ci ratio: 1.636555e-01	ci left: 4.368823e-03	ci right 5.155404e-03	k: 570	n:120000
C12orf29   120000 perm   32 sec   (3694 perm/sec)   p_kst 4.750000e-03   p_cons 2.194583e-01   p_joint 4.016667e-03

Joint ci ratio: 1.891675e-01	ci left: 2.980863e-03	ci right 3.610846e-03	k: 427	n:130000
Cons ci ratio: 2.049861e-02	ci left: 2.172908e-01	ci right 2.217987e-01	k: 28540	n:130000
KS ci ratio: 1.579530e-01	ci left: 4.342833e-03	ci right 5.094906e-03	k: 612	n:130000
C12orf29   130000 perm   36 sec   (3642 perm/sec)   p_kst 4.707692e-03   p_cons 2.195385e-01   p_joint 3.284615e-03

Joint ci ratio: 1.853208e-01	ci left: 2.890476e-03	ci right 3.487537e-03	k: 445	n:140000
Cons ci ratio: 1.977375e-02	ci left: 2.170138e-01	ci right 2.213549e-01	k: 30685	n:140000
KS ci ratio: 1.517638e-01	ci left: 4.382810e-03	ci right 5.109364e-03	k: 663	n:140000
C12orf29   140000 perm   39 sec   (3589 perm/sec)   p_kst 4.735714e-03   p_cons 2.191786e-01   p_joint 3.178571e-03

Joint ci ratio: 1.618941e-01	ci left: 3.578075e-03	ci right 4.214671e-03	k: 583	n:150000
Cons ci ratio: 1.911661e-02	ci left: 2.168494e-01	ci right 2.210415e-01	k: 32841	n:150000
KS ci ratio: 1.472879e-01	ci left: 4.353726e-03	ci right 5.052298e-03	k: 704	n:150000
C12orf29   150000 perm   43 sec   (3525 perm/sec)   p_kst 4.693333e-03   p_cons 2.189400e-01   p_joint 3.886667e-03

Joint ci ratio: 1.276164e-01	ci left: 5.488230e-03	ci right 6.242345e-03	k: 937	n:160000
Cons ci ratio: 1.852057e-02	ci left: 2.167139e-01	ci right 2.207713e-01	k: 34998	n:160000
KS ci ratio: 1.422314e-01	ci left: 4.388831e-03	ci right 5.066808e-03	k: 755	n:160000
C12orf29   160000 perm   46 sec   (3484 perm/sec)   p_kst 4.718750e-03   p_cons 2.187375e-01   p_joint 5.856250e-03

Joint ci ratio: 1.239078e-01	ci left: 5.490140e-03	ci right 6.220984e-03	k: 994	n:170000
Cons ci ratio: 1.796093e-02	ci left: 2.169011e-01	ci right 2.208379e-01	k: 37207	n:170000
KS ci ratio: 1.387022e-01	ci left: 4.352008e-03	ci right 5.006237e-03	k: 794	n:170000
C12orf29   170000 perm   49 sec   (3450 perm/sec)   p_kst 4.670588e-03   p_cons 2.188647e-01   p_joint 5.847059e-03

Joint ci ratio: 1.111167e-01	ci left: 6.484951e-03	ci right 7.253283e-03	k: 1235	n:180000
Cons ci ratio: 1.746389e-02	ci left: 2.167811e-01	ci right 2.206058e-01	k: 39364	n:180000
KS ci ratio: 1.350173e-01	ci left: 4.346304e-03	ci right 4.980923e-03	k: 838	n:180000
C12orf29   180000 perm   53 sec   (3416 perm/sec)   p_kst 4.655556e-03   p_cons 2.186889e-01   p_joint 6.861111e-03

Joint ci ratio: 1.312385e-01	ci left: 4.366860e-03	ci right 4.985244e-03	k: 887	n:190000
Cons ci ratio: 1.700830e-02	ci left: 2.166279e-01	ci right 2.203491e-01	k: 41512	n:190000
KS ci ratio: 1.310902e-01	ci left: 4.377043e-03	ci right 4.996113e-03	k: 889	n:190000
C12orf29   190000 perm   56 sec   (3368 perm/sec)   p_kst 4.678947e-03   p_cons 2.184842e-01   p_joint 4.668421e-03

Joint ci ratio: 1.286600e-01	ci left: 4.322659e-03	ci right 4.921838e-03	k: 923	n:200000
Cons ci ratio: 1.658928e-02	ci left: 2.164363e-01	ci right 2.200618e-01	k: 43649	n:200000
KS ci ratio: 1.281731e-01	ci left: 4.356540e-03	ci right 4.957956e-03	k: 930	n:200000
C12orf29   200000 perm   61 sec   (3293 perm/sec)   p_kst 4.650000e-03   p_cons 2.182450e-01   p_joint 4.615000e-03

Joint ci ratio: 1.253777e-01	ci left: 4.342741e-03	ci right 4.928205e-03	k: 972	n:210000
Cons ci ratio: 1.618891e-02	ci left: 2.164920e-01	ci right 2.200301e-01	k: 45834	n:210000
KS ci ratio: 1.249270e-01	ci left: 4.375035e-03	ci right 4.962576e-03	k: 979	n:210000
C12orf29   210000 perm   64 sec   (3262 perm/sec)   p_kst 4.661905e-03   p_cons 2.182571e-01   p_joint 4.628571e-03

Joint ci ratio: 1.223344e-01	ci left: 4.361173e-03	ci right 4.933817e-03	k: 1021	n:220000
Cons ci ratio: 1.582569e-02	ci left: 2.163396e-01	ci right 2.197951e-01	k: 47974	n:220000
KS ci ratio: 1.221544e-01	ci left: 4.374394e-03	ci right 4.947868e-03	k: 1024	n:220000
C12orf29   220000 perm   68 sec   (3218 perm/sec)   p_kst 4.654545e-03   p_cons 2.180636e-01   p_joint 4.640909e-03

Joint ci ratio: 1.195025e-01	ci left: 4.378159e-03	ci right 4.938785e-03	k: 1070	n:230000
Cons ci ratio: 1.547638e-02	ci left: 2.164094e-01	ci right 2.197890e-01	k: 50162	n:230000
KS ci ratio: 1.188906e-01	ci left: 4.424565e-03	ci right 4.988029e-03	k: 1081	n:230000
C12orf29   230000 perm   72 sec   (3176 perm/sec)   p_kst 4.700000e-03   p_cons 2.180957e-01   p_joint 4.652174e-03

Joint ci ratio: 1.172272e-01	ci left: 4.365552e-03	ci right 4.913183e-03	k: 1112	n:240000
Cons ci ratio: 1.514627e-02	ci left: 2.165406e-01	ci right 2.198495e-01	k: 52366	n:240000
KS ci ratio: 1.162346e-01	ci left: 4.442417e-03	ci right 4.994648e-03	k: 1131	n:240000
C12orf29   240000 perm   77 sec   (3121 perm/sec)   p_kst 4.712500e-03   p_cons 2.181917e-01   p_joint 4.633333e-03

Joint ci ratio: 1.145304e-01	ci left: 4.396790e-03	ci right 4.934793e-03	k: 1165	n:250000
Cons ci ratio: 1.484634e-02	ci left: 2.164346e-01	ci right 2.196759e-01	k: 54513	n:250000
KS ci ratio: 1.139428e-01	ci left: 4.443424e-03	ci right 4.984157e-03	k: 1177	n:250000
C12orf29   250000 perm   81 sec   (3077 perm/sec)   p_kst 4.708000e-03   p_cons 2.180520e-01   p_joint 4.660000e-03

Joint ci ratio: 1.169846e-01	ci left: 4.048369e-03	ci right 4.555086e-03	k: 1117	n:260000
Cons ci ratio: 1.456289e-02	ci left: 2.163528e-01	ci right 2.195304e-01	k: 56664	n:260000
KS ci ratio: 1.115072e-01	ci left: 4.466887e-03	ci right 4.998092e-03	k: 1229	n:260000
C12orf29   260000 perm   85 sec   (3049 perm/sec)   p_kst 4.726923e-03   p_cons 2.179385e-01   p_joint 4.296154e-03

Joint ci ratio: 1.151469e-01	ci left: 4.027889e-03	ci right 4.523585e-03	k: 1153	n:270000
Cons ci ratio: 1.429555e-02	ci left: 2.162665e-01	ci right 2.193840e-01	k: 58812	n:270000
KS ci ratio: 1.094791e-01	ci left: 4.467109e-03	ci right 4.988055e-03	k: 1275	n:270000
C12orf29   270000 perm   89 sec   (3020 perm/sec)   p_kst 4.722222e-03   p_cons 2.178222e-01   p_joint 4.270370e-03

Joint ci ratio: 1.223956e-01	ci left: 3.426534e-03	ci right 3.876693e-03	k: 1021	n:280000
Cons ci ratio: 1.404535e-02	ci left: 2.161156e-01	ci right 2.191760e-01	k: 60940	n:280000
KS ci ratio: 1.076396e-01	ci left: 4.460444e-03	ci right 4.971319e-03	k: 1319	n:280000
C12orf29   280000 perm   94 sec   (2984 perm/sec)   p_kst 4.710714e-03   p_cons 2.176429e-01   p_joint 3.646429e-03

Joint ci ratio: 1.270400e-01	ci left: 3.064468e-03	ci right 3.483487e-03	k: 948	n:290000
Cons ci ratio: 1.379666e-02	ci left: 2.162507e-01	ci right 2.192584e-01	k: 63148	n:290000
KS ci ratio: 1.058120e-01	ci left: 4.461022e-03	ci right 4.962748e-03	k: 1365	n:290000
C12orf29   290000 perm   99 sec   (2930 perm/sec)   p_kst 4.706897e-03   p_cons 2.177517e-01   p_joint 3.268966e-03

Joint ci ratio: 1.246327e-01	ci left: 3.081772e-03	ci right 3.494582e-03	k: 985	n:300000
Cons ci ratio: 1.357440e-02	ci left: 2.160348e-01	ci right 2.189907e-01	k: 65253	n:300000
KS ci ratio: 1.037426e-01	ci left: 4.490854e-03	ci right 4.985455e-03	k: 1420	n:300000
C12orf29   300000 perm   104 sec   (2896 perm/sec)   p_kst 4.733333e-03   p_cons 2.175100e-01   p_joint 3.283333e-03

Joint ci ratio: 1.353118e-01	ci left: 2.517265e-03	ci right 2.885678e-03	k: 836	n:310000
Cons ci ratio: 1.335077e-02	ci left: 2.161325e-01	ci right 2.190406e-01	k: 67451	n:310000
KS ci ratio: 1.024196e-01	ci left: 4.462262e-03	ci right 4.947069e-03	k: 1457	n:310000
C12orf29   310000 perm   108 sec   (2864 perm/sec)   p_kst 4.700000e-03   p_cons 2.175839e-01   p_joint 2.696774e-03

Joint ci ratio: 1.387676e-01	ci left: 2.314851e-03	ci right 2.663007e-03	k: 795	n:320000
Cons ci ratio: 1.314641e-02	ci left: 2.160030e-01	ci right 2.188646e-01	k: 69578	n:320000
KS ci ratio: 1.003398e-01	ci left: 4.508613e-03	ci right 4.987923e-03	k: 1518	n:320000
C12orf29   320000 perm   113 sec   (2833 perm/sec)   p_kst 4.743750e-03   p_cons 2.174312e-01   p_joint 2.484375e-03

Joint ci ratio: 1.362232e-01	ci left: 2.332487e-03	ci right 2.676342e-03	k: 825	n:330000
Cons ci ratio: 1.294527e-02	ci left: 2.160360e-01	ci right 2.188538e-01	k: 71756	n:330000
KS ci ratio: 9.869611e-02	ci left: 4.522689e-03	ci right 4.995163e-03	k: 1569	n:330000
C12orf29   330000 perm   118 sec   (2799 perm/sec)   p_kst 4.754545e-03   p_cons 2.174424e-01   p_joint 2.500000e-03

Joint ci ratio: 1.345247e-01	ci left: 2.323557e-03	ci right 2.661482e-03	k: 846	n:340000
Cons ci ratio: 1.275385e-02	ci left: 2.160468e-01	ci right 2.188228e-01	k: 73927	n:340000
KS ci ratio: 9.737234e-02	ci left: 4.513038e-03	ci right 4.977818e-03	k: 1612	n:340000
C12orf29   340000 perm   123 sec   (2770 perm/sec)   p_kst 4.741176e-03   p_cons 2.174324e-01   p_joint 2.488235e-03

Joint ci ratio: 1.420387e-01	ci left: 2.017168e-03	ci right 2.328309e-03	k: 759	n:350000
Cons ci ratio: 1.256911e-02	ci left: 2.161000e-01	ci right 2.188361e-01	k: 76113	n:350000
KS ci ratio: 9.572367e-02	ci left: 4.540233e-03	ci right 4.999454e-03	k: 1668	n:350000
C12orf29   350000 perm   128 sec   (2743 perm/sec)   p_kst 4.765714e-03   p_cons 2.174657e-01   p_joint 2.168571e-03

Joint ci ratio: 1.166889e-01	ci left: 2.942600e-03	ci right 3.309914e-03	k: 1124	n:360000
Cons ci ratio: 1.238903e-02	ci left: 2.162364e-01	ci right 2.189348e-01	k: 78330	n:360000
KS ci ratio: 9.429340e-02	ci left: 4.552417e-03	ci right 5.005610e-03	k: 1719	n:360000
C12orf29   360000 perm   134 sec   (2686 perm/sec)   p_kst 4.775000e-03   p_cons 2.175833e-01   p_joint 3.122222e-03

Joint ci ratio: 1.152638e-01	ci left: 2.936550e-03	ci right 3.298328e-03	k: 1152	n:370000
Cons ci ratio: 1.223006e-02	ci left: 2.159882e-01	ci right 2.186487e-01	k: 80407	n:370000
KS ci ratio: 9.297815e-02	ci left: 4.558711e-03	ci right 5.005856e-03	k: 1768	n:370000
C12orf29   370000 perm   140 sec   (2644 perm/sec)   p_kst 4.778378e-03   p_cons 2.173162e-01   p_joint 3.113514e-03

Joint ci ratio: 1.217401e-01	ci left: 2.555360e-03	ci right 2.889137e-03	k: 1033	n:380000
Cons ci ratio: 1.206967e-02	ci left: 2.159607e-01	ci right 2.185857e-01	k: 82563	n:380000
KS ci ratio: 9.181799e-02	ci left: 4.554429e-03	ci right 4.995280e-03	k: 1813	n:380000
C12orf29   380000 perm   145 sec   (2613 perm/sec)   p_kst 4.771053e-03   p_cons 2.172711e-01   p_joint 2.718421e-03

Joint ci ratio: 1.201811e-01	ci left: 2.556974e-03	ci right 2.886381e-03	k: 1060	n:390000
Cons ci ratio: 1.191390e-02	ci left: 2.159784e-01	ci right 2.185694e-01	k: 84736	n:390000
KS ci ratio: 9.057789e-02	ci left: 4.562931e-03	ci right 4.998323e-03	k: 1863	n:390000
C12orf29   390000 perm   151 sec   (2580 perm/sec)   p_kst 4.776923e-03   p_cons 2.172718e-01   p_joint 2.717949e-03

Joint ci ratio: 1.188999e-01	ci left: 2.548829e-03	ci right 2.873441e-03	k: 1083	n:400000
Cons ci ratio: 1.176315e-02	ci left: 2.160203e-01	ci right 2.185788e-01	k: 86919	n:400000
KS ci ratio: 8.964593e-02	ci left: 4.544158e-03	ci right 4.973064e-03	k: 1902	n:400000
C12orf29   400000 perm   156 sec   (2557 perm/sec)   p_kst 4.755000e-03   p_cons 2.172975e-01   p_joint 2.707500e-03

Joint ci ratio: 1.230718e-01	ci left: 2.316349e-03	ci right 2.622458e-03	k: 1011	n:410000
Cons ci ratio: 1.161998e-02	ci left: 2.160019e-01	ci right 2.185289e-01	k: 89078	n:410000
KS ci ratio: 8.862759e-02	ci left: 4.538249e-03	ci right 4.961480e-03	k: 1946	n:410000
C12orf29   410000 perm   162 sec   (2534 perm/sec)   p_kst 4.746341e-03   p_cons 2.172634e-01   p_joint 2.465854e-03

Joint ci ratio: 1.059673e-01	ci left: 3.075477e-03	ci right 3.421908e-03	k: 1363	n:420000
Cons ci ratio: 1.147765e-02	ci left: 2.161105e-01	ci right 2.186076e-01	k: 91290	n:420000
KS ci ratio: 8.751078e-02	ci left: 4.546622e-03	ci right 4.965017e-03	k: 1996	n:420000
C12orf29   420000 perm   167 sec   (2512 perm/sec)   p_kst 4.752381e-03   p_cons 2.173571e-01   p_joint 3.245238e-03

Joint ci ratio: 1.067993e-01	ci left: 2.956407e-03	ci right 3.292204e-03	k: 1342	n:430000
Cons ci ratio: 1.134175e-02	ci left: 2.161748e-01	ci right 2.186429e-01	k: 93485	n:430000
KS ci ratio: 8.649887e-02	ci left: 4.547811e-03	ci right 4.961232e-03	k: 2043	n:430000
C12orf29   430000 perm   173 sec   (2489 perm/sec)   p_kst 4.751163e-03   p_cons 2.174070e-01   p_joint 3.120930e-03

Joint ci ratio: 1.034566e-01	ci left: 3.083969e-03	ci right 3.422625e-03	k: 1430	n:440000
Cons ci ratio: 1.121123e-02	ci left: 2.162160e-01	ci right 2.186559e-01	k: 95671	n:440000
KS ci ratio: 8.562420e-02	ci left: 4.537851e-03	ci right 4.945986e-03	k: 2085	n:440000
C12orf29   440000 perm   178 sec   (2468 perm/sec)   p_kst 4.738636e-03   p_cons 2.174341e-01   p_joint 3.250000e-03

Joint ci ratio: 1.021440e-01	ci left: 3.095545e-03	ci right 3.430901e-03	k: 1467	n:450000
Cons ci ratio: 1.108606e-02	ci left: 2.162266e-01	ci right 2.186393e-01	k: 97844	n:450000
KS ci ratio: 8.459597e-02	ci left: 4.547932e-03	ci right 4.951819e-03	k: 2136	n:450000
C12orf29   450000 perm   184 sec   (2446 perm/sec)   p_kst 4.746667e-03   p_cons 2.174311e-01   p_joint 3.260000e-03

Joint ci ratio: 1.009812e-01	ci left: 3.100287e-03	ci right 3.432106e-03	k: 1501	n:460000
Cons ci ratio: 1.096506e-02	ci left: 2.162348e-01	ci right 2.186210e-01	k: 100016	n:460000
KS ci ratio: 8.381587e-02	ci left: 4.534187e-03	ci right 4.932960e-03	k: 2176	n:460000
C12orf29   460000 perm   190 sec   (2424 perm/sec)   p_kst 4.730435e-03   p_cons 2.174261e-01   p_joint 3.263043e-03

Joint ci ratio: 9.992244e-02	ci left: 3.100698e-03	ci right 3.428877e-03	k: 1533	n:470000
Cons ci ratio: 1.085445e-02	ci left: 2.160388e-01	ci right 2.183987e-01	k: 102092	n:470000
KS ci ratio: 8.301935e-02	ci left: 4.525212e-03	ci right 4.919230e-03	k: 2218	n:470000
C12orf29   470000 perm   196 sec   (2402 perm/sec)   p_kst 4.719149e-03   p_cons 2.172170e-01   p_joint 3.261702e-03

Outputting figure to mutsig2_images.part000000000019/C12orf29.3_1006_470000_0.0047191_0.21722_0.0032617.png
                gene_name: C12orf29
               theta_stop: 0.100 
                    nperm: 470000 
                     p_ks: 0.0047 
        ci_ks_bounds_left: 0.0045 
       ci_ks_bounds_right: 0.0049 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.0033 
     ci_joint_bounds_left: 0.0031 
    ci_joint_bounds_right: 0.0034 

Current progress: 48 percent done.
C12orf41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.150889e-02	ci left: 7.602067e-01	ci right 7.768366e-01	k: 7686	n:10000
KS ci ratio: 2.490568e-02	ci left: 7.034174e-01	ci right 7.212588e-01	k: 7124	n:10000
C12orf41   10000 perm   2 sec   (5122 perm/sec)   p_kst 7.124000e-01   p_cons 7.686000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C12orf41.3_1515_10000_0.7124_0.7686_1.png
                gene_name: C12orf41
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
C12orf56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.153030e-01	ci left: 9.759583e-02	ci right 1.096362e-01	k: 1035	n:10000
Cons ci ratio: 4.171224e-02	ci left: 4.590794e-01	ci right 4.787387e-01	k: 4689	n:10000
KS ci ratio: 1.915330e-01	ci left: 3.633915e-02	ci right 4.413159e-02	k: 401	n:10000
C12orf56   10000 perm   2 sec   (5511 perm/sec)   p_kst 4.010000e-02   p_cons 4.689000e-01   p_joint 1.035000e-01

Joint ci ratio: 5.156127e-02	ci left: 2.183859e-01	ci right 2.299944e-01	k: 4483	n:20000
Cons ci ratio: 2.970848e-02	ci left: 4.584176e-01	ci right 4.722925e-01	k: 9307	n:20000
KS ci ratio: 1.362337e-01	ci left: 3.703607e-02	ci right 4.249877e-02	k: 794	n:20000
C12orf56   20000 perm   4 sec   (4938 perm/sec)   p_kst 3.970000e-02   p_cons 4.653500e-01   p_joint 2.241500e-01

Joint ci ratio: 6.128736e-02	ci left: 1.163101e-01	ci right 1.236970e-01	k: 3599	n:30000
Cons ci ratio: 2.301442e-02	ci left: 4.859272e-01	ci right 4.972744e-01	k: 14748	n:30000
KS ci ratio: 1.093162e-01	ci left: 3.884897e-02	ci right 4.337378e-02	k: 1232	n:30000
C12orf56   30000 perm   6 sec   (4708 perm/sec)   p_kst 4.106667e-02   p_cons 4.916000e-01   p_joint 1.199667e-01

Joint ci ratio: 5.598692e-02	ci left: 1.061101e-01	ci right 1.122468e-01	k: 4366	n:40000
Cons ci ratio: 1.994230e-02	ci left: 4.864141e-01	ci right 4.962372e-01	k: 19653	n:40000
KS ci ratio: 9.552247e-02	ci left: 3.846696e-02	ci right 4.235012e-02	k: 1615	n:40000
C12orf56   40000 perm   9 sec   (4379 perm/sec)   p_kst 4.037500e-02   p_cons 4.913250e-01   p_joint 1.091500e-01

Outputting figure to mutsig2_images.part000000000019/C12orf56.3_1921_40000_0.040375_0.49133_0.10915.png
                gene_name: C12orf56
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 52 percent done.
C12orf59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.141216e-02	ci left: 7.618263e-01	ci right 7.784160e-01	k: 7702	n:10000
KS ci ratio: 5.932257e-03	ci left: 9.746130e-01	ci right 9.805043e-01	k: 9777	n:10000
C12orf59   10000 perm   2 sec   (6336 perm/sec)   p_kst 9.777000e-01   p_cons 7.702000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C12orf59.3_508_10000_0.9777_0.7702_1.png
                gene_name: C12orf59
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
C13orf23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.907674e-02	ci left: 4.916510e-01	ci right 5.113481e-01	k: 5015	n:10000
Cons ci ratio: 8.830905e-02	ci left: 1.572823e-01	ci right 1.719136e-01	k: 1645	n:10000
KS ci ratio: 3.284991e-02	ci left: 5.776768e-01	ci right 5.970723e-01	k: 5874	n:10000
C13orf23   10000 perm   2 sec   (5351 perm/sec)   p_kst 5.874000e-01   p_cons 1.645000e-01   p_joint 5.015000e-01

Outputting figure to mutsig2_images.part000000000019/C13orf23.3_2887_10000_0.5874_0.1645_0.5015.png
                gene_name: C13orf23
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 57 percent done.
C13orf27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.308596e-02	ci left: 2.151691e-01	ci right 2.315924e-01	k: 2233	n:10000
Cons ci ratio: 6.471812e-02	ci left: 2.596344e-01	ci right 2.771008e-01	k: 2683	n:10000
KS ci ratio: 6.126117e-02	ci left: 2.815149e-01	ci right 2.994073e-01	k: 2904	n:10000
C13orf27   10000 perm   2 sec   (6334 perm/sec)   p_kst 2.904000e-01   p_cons 2.683000e-01   p_joint 2.233000e-01

Outputting figure to mutsig2_images.part000000000019/C13orf27.3_704_10000_0.2904_0.2683_0.2233.png
                gene_name: C13orf27
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 60 percent done.
C13orf36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.569972e-02	ci left: 4.140880e-01	ci right 4.335564e-01	k: 4238	n:10000
KS ci ratio: 4.515190e-03	ci left: 9.845824e-01	ci right 9.891274e-01	k: 9870	n:10000
C13orf36   10000 perm   2 sec   (6332 perm/sec)   p_kst 9.870000e-01   p_cons 4.238000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C13orf36.3_328_10000_0.987_0.4238_1.png
                gene_name: C13orf36
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
C14orf104
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.818499e-01	ci left: 4.035041e-02	ci right 4.851765e-02	k: 443	n:10000
Cons ci ratio: 1.195306e-01	ci left: 9.126730e-02	ci right 1.029686e-01	k: 970	n:10000
KS ci ratio: 2.213733e-01	ci left: 2.702777e-02	ci right 3.384941e-02	k: 303	n:10000
C14orf104   10000 perm   2 sec   (5575 perm/sec)   p_kst 3.030000e-02   p_cons 9.700000e-02   p_joint 4.430000e-02

Joint ci ratio: 1.358782e-01	ci left: 3.722952e-02	ci right 4.270526e-02	k: 798	n:20000
Cons ci ratio: 8.442632e-02	ci left: 9.317735e-02	ci right 1.014401e-01	k: 1945	n:20000
KS ci ratio: 1.483095e-01	ci left: 3.124203e-02	ci right 3.629470e-02	k: 674	n:20000
C14orf104   20000 perm   4 sec   (4909 perm/sec)   p_kst 3.370000e-02   p_cons 9.725000e-02   p_joint 3.990000e-02

Joint ci ratio: 1.145520e-01	ci left: 3.541081e-02	ci right 3.974600e-02	k: 1126	n:30000
Cons ci ratio: 7.115665e-02	ci left: 8.858839e-02	ci right 9.515756e-02	k: 2755	n:30000
KS ci ratio: 1.211880e-01	ci left: 3.165422e-02	ci right 3.577006e-02	k: 1010	n:30000
C14orf104   30000 perm   6 sec   (4673 perm/sec)   p_kst 3.366667e-02   p_cons 9.183333e-02   p_joint 3.753333e-02

Joint ci ratio: 1.400846e-01	ci left: 1.785355e-02	ci right 2.056689e-02	k: 767	n:40000
Cons ci ratio: 6.174092e-02	ci left: 8.871640e-02	ci right 9.439305e-02	k: 3661	n:40000
KS ci ratio: 1.055207e-01	ci left: 3.158754e-02	ci right 3.513063e-02	k: 1333	n:40000
C14orf104   40000 perm   9 sec   (4514 perm/sec)   p_kst 3.332500e-02   p_cons 9.152500e-02   p_joint 1.917500e-02

Joint ci ratio: 1.034786e-01	ci left: 2.645445e-02	ci right 2.936071e-02	k: 1394	n:50000
Cons ci ratio: 5.296344e-02	ci left: 9.611881e-02	ci right 1.013679e-01	k: 4936	n:50000
KS ci ratio: 9.419107e-02	ci left: 3.190084e-02	ci right 3.507362e-02	k: 1673	n:50000
C14orf104   50000 perm   11 sec   (4396 perm/sec)   p_kst 3.346000e-02   p_cons 9.872000e-02   p_joint 2.788000e-02

Joint ci ratio: 9.987173e-02	ci left: 2.378171e-02	ci right 2.629786e-02	k: 1501	n:60000
Cons ci ratio: 4.837784e-02	ci left: 9.624216e-02	ci right 1.010301e-01	k: 5917	n:60000
KS ci ratio: 8.622453e-02	ci left: 3.186233e-02	ci right 3.474970e-02	k: 1997	n:60000
C14orf104   60000 perm   14 sec   (4292 perm/sec)   p_kst 3.328333e-02   p_cons 9.861667e-02   p_joint 2.501667e-02

Outputting figure to mutsig2_images.part000000000019/C14orf104.3_2526_60000_0.033283_0.098617_0.025017.png
                gene_name: C14orf104
               theta_stop: 0.100 
                    nperm: 60000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 65 percent done.
C11orf65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.549010e-02	ci left: 6.937343e-01	ci right 7.117474e-01	k: 7028	n:10000
Cons ci ratio: 4.152849e-02	ci left: 4.612762e-01	ci right 4.809407e-01	k: 4711	n:10000
KS ci ratio: 2.961459e-02	ci left: 6.270843e-01	ci right 6.460361e-01	k: 6366	n:10000
C11orf65   10000 perm   2 sec   (6601 perm/sec)   p_kst 6.366000e-01   p_cons 4.711000e-01   p_joint 7.028000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf65.2_974_10000_0.6366_0.4711_0.7028.png
                gene_name: C11orf65
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 68 percent done.
C11orf80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.425064e-02	ci left: 7.143166e-01	ci right 7.319532e-01	k: 7232	n:10000
Cons ci ratio: 7.406857e-02	ci left: 2.106310e-01	ci right 2.269331e-01	k: 2187	n:10000
KS ci ratio: 2.818337e-02	ci left: 6.498149e-01	ci right 6.684923e-01	k: 6592	n:10000
C11orf80   10000 perm   2 sec   (5794 perm/sec)   p_kst 6.592000e-01   p_cons 2.187000e-01   p_joint 7.232000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf80.2_2102_10000_0.6592_0.2187_0.7232.png
                gene_name: C11orf80
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 70 percent done.
C11orf9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.164216e-02	ci left: 2.220775e-01	ci right 2.386798e-01	k: 2303	n:10000
Cons ci ratio: 1.269027e-01	ci left: 8.154699e-02	ci right 9.269490e-02	k: 870	n:10000
KS ci ratio: 2.937187e-02	ci left: 6.309046e-01	ci right 6.498135e-01	k: 6404	n:10000
C11orf9   10000 perm   2 sec   (5124 perm/sec)   p_kst 6.404000e-01   p_cons 8.700000e-02   p_joint 2.303000e-01

Joint ci ratio: 1.507651e-02	ci left: 7.658186e-01	ci right 7.775023e-01	k: 15434	n:20000
Cons ci ratio: 8.870753e-02	ci left: 8.499069e-02	ci right 9.292928e-02	k: 1778	n:20000
KS ci ratio: 2.045313e-02	ci left: 6.407826e-01	ci right 6.540745e-01	k: 12949	n:20000
C11orf9   20000 perm   5 sec   (4351 perm/sec)   p_kst 6.474500e-01   p_cons 8.890000e-02   p_joint 7.717000e-01

Outputting figure to mutsig2_images.part000000000019/C11orf9.2_3590_20000_0.64745_0.0889_0.7717.png
                gene_name: C11orf9
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 72 percent done.
C12orf24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.646289e-02	ci left: 8.429516e-01	ci right 8.570439e-01	k: 8501	n:10000
Cons ci ratio: 4.159520e-02	ci left: 4.604773e-01	ci right 4.801400e-01	k: 4703	n:10000
KS ci ratio: 6.347270e-02	ci left: 2.672549e-01	ci right 2.848757e-01	k: 2760	n:10000
C12orf24   10000 perm   1 sec   (6743 perm/sec)   p_kst 2.760000e-01   p_cons 4.703000e-01   p_joint 8.501000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf24.2_850_10000_0.276_0.4703_0.8501.png
                gene_name: C12orf24
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 75 percent done.
C12orf48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.490924e-02	ci left: 3.282306e-01	ci right 3.468641e-01	k: 3375	n:10000
Cons ci ratio: 7.805671e-02	ci left: 1.934789e-01	ci right 2.092954e-01	k: 2013	n:10000
KS ci ratio: 1.608017e-02	ci left: 8.489651e-01	ci right 8.628268e-01	k: 8560	n:10000
C12orf48   10000 perm   2 sec   (6261 perm/sec)   p_kst 8.560000e-01   p_cons 2.013000e-01   p_joint 3.375000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf48.2_1533_10000_0.856_0.2013_0.3375.png
                gene_name: C12orf48
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 78 percent done.
C12orf50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.944755e-02	ci left: 7.945595e-01	ci right 8.102639e-01	k: 8025	n:10000
KS ci ratio: 9.675168e-02	ci left: 1.341362e-01	ci right 1.478736e-01	k: 1409	n:10000
C12orf50   10000 perm   2 sec   (6373 perm/sec)   p_kst 1.409000e-01   p_cons 8.025000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C12orf50.2_1293_10000_0.1409_0.8025_1.png
                gene_name: C12orf50
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
C12orf52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.174650e-01	ci left: 9.428457e-02	ci right 1.061495e-01	k: 1001	n:10000
Cons ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
KS ci ratio: 2.057608e-02	ci left: 7.758023e-01	ci right 7.920319e-01	k: 7840	n:10000
C12orf52   10000 perm   2 sec   (6605 perm/sec)   p_kst 7.840000e-01   p_cons 8.370000e-02   p_joint 1.001000e-01

Joint ci ratio: 7.500766e-02	ci left: 1.156252e-01	ci right 1.246856e-01	k: 2402	n:20000
Cons ci ratio: 9.108822e-02	ci left: 8.087673e-02	ci right 8.864449e-02	k: 1694	n:20000
KS ci ratio: 1.456439e-02	ci left: 7.778774e-01	ci right 7.893400e-01	k: 15673	n:20000
C12orf52   20000 perm   3 sec   (5813 perm/sec)   p_kst 7.836500e-01   p_cons 8.470000e-02   p_joint 1.201000e-01

Outputting figure to mutsig2_images.part000000000019/C12orf52.2_818_20000_0.78365_0.0847_0.1201.png
                gene_name: C12orf52
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 82 percent done.
C13orf16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.151493e-02	ci left: 7.601055e-01	ci right 7.767378e-01	k: 7685	n:10000
KS ci ratio: 1.142599e-01	ci left: 9.925222e-02	ci right 1.113788e-01	k: 1052	n:10000
C13orf16   10000 perm   1 sec   (7068 perm/sec)   p_kst 1.052000e-01   p_cons 7.685000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.529883e-02	ci left: 7.605733e-01	ci right 7.723491e-01	k: 15330	n:20000
KS ci ratio: 7.970010e-02	ci left: 1.035833e-01	ci right 1.122311e-01	k: 2157	n:20000
C13orf16   20000 perm   3 sec   (6078 perm/sec)   p_kst 1.078500e-01   p_cons 7.665000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C13orf16.2_476_20000_0.10785_0.7665_1.png
                gene_name: C13orf16
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
C13orf28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.533871e-02	ci left: 5.417887e-01	ci right 5.613813e-01	k: 5516	n:10000
KS ci ratio: 1.798676e-02	ci left: 8.185266e-01	ci right 8.334830e-01	k: 8261	n:10000
C13orf28   10000 perm   2 sec   (4783 perm/sec)   p_kst 8.261000e-01   p_cons 5.516000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C13orf28.2_616_10000_0.8261_0.5516_1.png
                gene_name: C13orf28
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
C13orf31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.259349e-02	ci left: 4.486973e-01	ci right 4.683269e-01	k: 4585	n:10000
KS ci ratio: 5.138321e-03	ci left: 9.804856e-01	ci right 9.856275e-01	k: 9832	n:10000
C13orf31   10000 perm   2 sec   (5711 perm/sec)   p_kst 9.832000e-01   p_cons 4.585000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C13orf31.2_1313_10000_0.9832_0.4585_1.png
                gene_name: C13orf31
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
C13orf33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.431726e-02	ci left: 7.132062e-01	ci right 7.308642e-01	k: 7221	n:10000
KS ci ratio: 4.537380e-02	ci left: 4.175767e-01	ci right 4.370657e-01	k: 4273	n:10000
C13orf33   10000 perm   2 sec   (6475 perm/sec)   p_kst 4.273000e-01   p_cons 7.221000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000019/C13orf33.2_932_10000_0.4273_0.7221_1.png
                gene_name: C13orf33
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
C13orf34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.314294e-02	ci left: 8.929274e-01	ci right 9.048391e-01	k: 8990	n:10000
Cons ci ratio: 2.558774e-02	ci left: 6.921210e-01	ci right 7.101617e-01	k: 7012	n:10000
KS ci ratio: 6.321963e-02	ci left: 2.688388e-01	ci right 2.864909e-01	k: 2776	n:10000
C13orf34   10000 perm   2 sec   (5391 perm/sec)   p_kst 2.776000e-01   p_cons 7.012000e-01   p_joint 8.990000e-01

Outputting figure to mutsig2_images.part000000000019/C13orf34.2_1724_10000_0.2776_0.7012_0.899.png
                gene_name: C13orf34
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 95 percent done.
C13orf39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.665096e-02	ci left: 5.236636e-01	ci right 5.433168e-01	k: 5335	n:10000
Cons ci ratio: 5.856484e-02	ci left: 3.002475e-01	ci right 3.184636e-01	k: 3093	n:10000
KS ci ratio: 1.178264e-02	ci left: 9.116264e-01	ci right 9.225292e-01	k: 9172	n:10000
C13orf39   10000 perm   1 sec   (6966 perm/sec)   p_kst 9.172000e-01   p_cons 3.093000e-01   p_joint 5.335000e-01

Outputting figure to mutsig2_images.part000000000019/C13orf39.2_811_10000_0.9172_0.3093_0.5335.png
                gene_name: C13orf39
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 98 percent done.
C14orf105
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 4.922911e-01	ci left: 4.756711e-03	ci right 7.941167e-03	k: 62	n:10000
KS ci ratio: 6.521239e-01	ci left: 2.439052e-03	ci right 4.864323e-03	k: 35	n:10000
C14orf105   10000 perm   1 sec   (6740 perm/sec)   p_kst 3.500000e-03   p_cons 6.200000e-03   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 3.106165e-01	ci left: 6.673885e-03	ci right 9.172365e-03	k: 157	n:20000
KS ci ratio: 5.011261e-01	ci left: 2.290073e-03	ci right 3.859930e-03	k: 60	n:20000
C14orf105   20000 perm   3 sec   (5806 perm/sec)   p_kst 3.000000e-03   p_cons 7.850000e-03   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.514890e-01	ci left: 7.023142e-03	ci right 9.073849e-03	k: 240	n:30000
KS ci ratio: 4.220912e-01	ci left: 2.263774e-03	ci right 3.502286e-03	k: 85	n:30000
C14orf105   30000 perm   5 sec   (5518 perm/sec)   p_kst 2.833333e-03   p_cons 8.000000e-03   p_joint 0

Joint ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
Cons ci ratio: 2.172295e-01	ci left: 7.197650e-03	ci right 8.974878e-03	k: 322	n:40000
KS ci ratio: 3.588064e-01	ci left: 2.442383e-03	ci right 3.531758e-03	k: 118	n:40000
C14orf105   40000 perm   8 sec   (5198 perm/sec)   p_kst 2.950000e-03   p_cons 8.050000e-03   p_joint 2.500000e-05

Joint ci ratio: 1.959902e+00	ci left: 1.237361e-05	ci right 1.753353e-04	k: 3	n:50000
Cons ci ratio: 1.916231e-01	ci left: 7.504373e-03	ci right 9.113497e-03	k: 414	n:50000
KS ci ratio: 3.228373e-01	ci left: 2.466107e-03	ci right 3.433034e-03	k: 146	n:50000
C14orf105   50000 perm   10 sec   (5009 perm/sec)   p_kst 2.920000e-03   p_cons 8.280000e-03   p_joint 6.000000e-05

Joint ci ratio: 1.959918e+00	ci left: 1.031132e-05	ci right 1.461142e-04	k: 3	n:60000
Cons ci ratio: 1.759997e-01	ci left: 7.478004e-03	ci right 8.936833e-03	k: 491	n:60000
KS ci ratio: 3.002216e-01	ci left: 2.408480e-03	ci right 3.274056e-03	k: 169	n:60000
C14orf105   60000 perm   13 sec   (4764 perm/sec)   p_kst 2.816667e-03   p_cons 8.183333e-03   p_joint 5.000000e-05

Joint ci ratio: 1.753002e+00	ci left: 1.556972e-05	ci right 1.463019e-04	k: 4	n:70000
Cons ci ratio: 1.619515e-01	ci left: 7.627499e-03	ci right 8.985162e-03	k: 580	n:70000
KS ci ratio: 2.817765e-01	ci left: 2.369014e-03	ci right 3.158815e-03	k: 192	n:70000
C14orf105   70000 perm   15 sec   (4628 perm/sec)   p_kst 2.742857e-03   p_cons 8.285714e-03   p_joint 5.714286e-05

Joint ci ratio: 1.131515e+00	ci left: 6.864144e-05	ci right 2.460121e-04	k: 11	n:80000
Cons ci ratio: 1.424647e-01	ci left: 8.706735e-03	ci right 1.005420e-02	k: 749	n:80000
KS ci ratio: 2.701487e-01	ci left: 2.270673e-03	ci right 2.991152e-03	k: 209	n:80000
C14orf105   80000 perm   18 sec   (4510 perm/sec)   p_kst 2.612500e-03   p_cons 9.362500e-03   p_joint 1.375000e-04

Joint ci ratio: 1.087128e+00	ci left: 6.889712e-05	ci right 2.328949e-04	k: 12	n:90000
Cons ci ratio: 1.335010e-01	ci left: 8.855059e-03	ci right 1.013241e-02	k: 853	n:90000
KS ci ratio: 2.526959e-01	ci left: 2.329897e-03	ci right 3.013897e-03	k: 239	n:90000
C14orf105   90000 perm   21 sec   (4318 perm/sec)   p_kst 2.655556e-03   p_cons 9.477778e-03   p_joint 1.333333e-04

Joint ci ratio: 1.087136e+00	ci left: 6.200724e-05	ci right 2.096065e-04	k: 12	n:100000
Cons ci ratio: 1.273217e-01	ci left: 8.791812e-03	ci right 9.996902e-03	k: 938	n:100000
KS ci ratio: 2.386838e-01	ci left: 2.369071e-03	ci right 3.020307e-03	k: 268	n:100000
C14orf105   100000 perm   24 sec   (4233 perm/sec)   p_kst 2.680000e-03   p_cons 9.380000e-03   p_joint 1.200000e-04

Joint ci ratio: 1.012066e+00	ci left: 6.958288e-05	ci right 2.135328e-04	k: 14	n:110000
Cons ci ratio: 1.210951e-01	ci left: 8.864622e-03	ci right 1.001601e-02	k: 1037	n:110000
KS ci ratio: 2.237786e-01	ci left: 2.470612e-03	ci right 3.101511e-03	k: 305	n:110000
C14orf105   110000 perm   26 sec   (4165 perm/sec)   p_kst 2.772727e-03   p_cons 9.427273e-03   p_joint 1.272727e-04

Joint ci ratio: 9.238797e-01	ci left: 8.252815e-05	ci right 2.268124e-04	k: 17	n:120000
Cons ci ratio: 1.162180e-01	ci left: 8.845556e-03	ci right 9.945016e-03	k: 1126	n:120000
KS ci ratio: 2.122896e-01	ci left: 2.532606e-03	ci right 3.141814e-03	k: 339	n:120000
C14orf105   120000 perm   29 sec   (4071 perm/sec)   p_kst 2.825000e-03   p_cons 9.383333e-03   p_joint 1.416667e-04

Joint ci ratio: 8.764678e-01	ci left: 8.799638e-05	ci right 2.282280e-04	k: 19	n:130000
Cons ci ratio: 1.121660e-01	ci left: 8.785340e-03	ci right 9.836722e-03	k: 1209	n:130000
KS ci ratio: 2.013289e-01	ci left: 2.614980e-03	ci right 3.207538e-03	k: 377	n:130000
C14orf105   130000 perm   33 sec   (3987 perm/sec)   p_kst 2.900000e-03   p_cons 9.300000e-03   p_joint 1.461538e-04

Joint ci ratio: 8.356782e-01	ci left: 9.285469e-05	ci right 2.292818e-04	k: 21	n:140000
Cons ci ratio: 1.082990e-01	ci left: 8.769054e-03	ci right 9.779999e-03	k: 1297	n:140000
KS ci ratio: 1.940239e-01	ci left: 2.625090e-03	ci right 3.195807e-03	k: 406	n:140000
C14orf105   140000 perm   36 sec   (3940 perm/sec)   p_kst 2.900000e-03   p_cons 9.264286e-03   p_joint 1.500000e-04

Joint ci ratio: 8.173111e-01	ci left: 9.191743e-05	ci right 2.220467e-04	k: 22	n:150000
Cons ci ratio: 1.045023e-01	ci left: 8.807429e-03	ci right 9.785013e-03	k: 1393	n:150000
KS ci ratio: 1.861799e-01	ci left: 2.672322e-03	ci right 3.227167e-03	k: 441	n:150000
C14orf105   150000 perm   39 sec   (3870 perm/sec)   p_kst 2.940000e-03   p_cons 9.286667e-03   p_joint 1.466667e-04

Joint ci ratio: 4.201525e-01	ci left: 4.299524e-04	ci right 6.637662e-04	k: 86	n:160000
Cons ci ratio: 1.005353e-01	ci left: 8.939050e-03	ci right 9.891354e-03	k: 1505	n:160000
KS ci ratio: 1.779116e-01	ci left: 2.755856e-03	ci right 3.299900e-03	k: 483	n:160000
C14orf105   160000 perm   43 sec   (3753 perm/sec)   p_kst 3.018750e-03   p_cons 9.406250e-03   p_joint 5.375000e-04

Joint ci ratio: 6.928974e-01	ci left: 1.239032e-04	ci right 2.588255e-04	k: 31	n:170000
Cons ci ratio: 9.741460e-02	ci left: 8.975433e-03	ci right 9.900236e-03	k: 1603	n:170000
KS ci ratio: 1.728104e-01	ci left: 2.756848e-03	ci right 3.283856e-03	k: 512	n:170000
C14orf105   170000 perm   46 sec   (3714 perm/sec)   p_kst 3.011765e-03   p_cons 9.429412e-03   p_joint 1.823529e-04

Joint ci ratio: 4.861270e-01	ci left: 2.738315e-04	ci right 4.540141e-04	k: 64	n:180000
Cons ci ratio: 9.428830e-02	ci left: 9.062434e-03	ci right 9.964580e-03	k: 1711	n:180000
KS ci ratio: 1.684363e-01	ci left: 2.747284e-03	ci right 3.257820e-03	k: 539	n:180000
C14orf105   180000 perm   49 sec   (3674 perm/sec)   p_kst 2.994444e-03   p_cons 9.505556e-03   p_joint 3.555556e-04

Joint ci ratio: 3.770940e-01	ci left: 4.615437e-04	ci right 6.804787e-04	k: 107	n:190000
Cons ci ratio: 9.139415e-02	ci left: 9.150989e-03	ci right 1.003249e-02	k: 1821	n:190000
KS ci ratio: 1.636561e-01	ci left: 2.764115e-03	ci right 3.261767e-03	k: 571	n:190000
C14orf105   190000 perm   52 sec   (3632 perm/sec)   p_kst 3.005263e-03   p_cons 9.584211e-03   p_joint 5.631579e-04

Joint ci ratio: 3.638564e-01	ci left: 4.747441e-04	ci right 6.901607e-04	k: 115	n:200000
Cons ci ratio: 8.872789e-02	ci left: 9.235957e-03	ci right 1.009834e-02	k: 1932	n:200000
KS ci ratio: 1.586040e-01	ci left: 2.803455e-03	ci right 3.291125e-03	k: 608	n:200000
C14orf105   200000 perm   56 sec   (3589 perm/sec)   p_kst 3.040000e-03   p_cons 9.660000e-03   p_joint 5.750000e-04

Joint ci ratio: 3.533501e-01	ci left: 4.824685e-04	ci right 6.936189e-04	k: 122	n:210000
Cons ci ratio: 8.677647e-02	ci left: 9.205995e-03	ci right 1.004572e-02	k: 2020	n:210000
KS ci ratio: 1.536351e-01	ci left: 2.852999e-03	ci right 3.332309e-03	k: 648	n:210000
C14orf105   210000 perm   59 sec   (3544 perm/sec)   p_kst 3.085714e-03   p_cons 9.619048e-03   p_joint 5.809524e-04

Joint ci ratio: 3.477425e-01	ci left: 4.771188e-04	ci right 6.818676e-04	k: 126	n:220000
Cons ci ratio: 8.492806e-02	ci left: 9.183396e-03	ci right 1.000233e-02	k: 2109	n:220000
KS ci ratio: 1.504255e-01	ci left: 2.845747e-03	ci right 3.312952e-03	k: 676	n:220000
C14orf105   220000 perm   63 sec   (3504 perm/sec)   p_kst 3.072727e-03   p_cons 9.586364e-03   p_joint 5.727273e-04

Joint ci ratio: 3.410935e-01	ci left: 4.762335e-04	ci right 6.758335e-04	k: 131	n:230000
Cons ci ratio: 8.302157e-02	ci left: 9.201260e-03	ci right 1.000248e-02	k: 2207	n:230000
KS ci ratio: 1.475140e-01	ci left: 2.835034e-03	ci right 3.290676e-03	k: 703	n:230000
C14orf105   230000 perm   66 sec   (3462 perm/sec)   p_kst 3.056522e-03   p_cons 9.595652e-03   p_joint 5.695652e-04

Joint ci ratio: 3.348119e-01	ci left: 4.754560e-04	ci right 6.702685e-04	k: 136	n:240000
Cons ci ratio: 8.143430e-02	ci left: 9.172914e-03	ci right 9.955665e-03	k: 2294	n:240000
KS ci ratio: 1.443695e-01	ci left: 2.841358e-03	ci right 3.287444e-03	k: 734	n:240000
C14orf105   240000 perm   70 sec   (3420 perm/sec)   p_kst 3.058333e-03   p_cons 9.558333e-03   p_joint 5.666667e-04

Joint ci ratio: 3.312070e-01	ci left: 4.674341e-04	ci right 6.564580e-04	k: 139	n:250000
Cons ci ratio: 7.985015e-02	ci left: 9.166575e-03	ci right 9.932860e-03	k: 2386	n:250000
KS ci ratio: 1.422587e-01	ci left: 2.812545e-03	ci right 3.247103e-03	k: 756	n:250000
C14orf105   250000 perm   74 sec   (3377 perm/sec)   p_kst 3.024000e-03   p_cons 9.544000e-03   p_joint 5.560000e-04

Joint ci ratio: 3.005514e-01	ci left: 5.557191e-04	ci right 7.556846e-04	k: 169	n:260000
Cons ci ratio: 7.825942e-02	ci left: 9.183489e-03	ci right 9.935197e-03	k: 2484	n:260000
KS ci ratio: 1.403281e-01	ci left: 2.782281e-03	ci right 3.205841e-03	k: 777	n:260000
C14orf105   260000 perm   79 sec   (3280 perm/sec)   p_kst 2.988462e-03   p_cons 9.553846e-03   p_joint 6.500000e-04

Joint ci ratio: 2.945481e-01	ci left: 5.591281e-04	ci right 7.555515e-04	k: 176	n:270000
Cons ci ratio: 7.671516e-02	ci left: 9.210190e-03	ci right 9.948543e-03	k: 2585	n:270000
KS ci ratio: 1.372730e-01	ci left: 2.804364e-03	ci right 3.221232e-03	k: 812	n:270000
C14orf105   270000 perm   83 sec   (3240 perm/sec)   p_kst 3.007407e-03   p_cons 9.574074e-03   p_joint 6.518519e-04

Joint ci ratio: 2.896795e-01	ci left: 5.590178e-04	ci right 7.515618e-04	k: 182	n:280000
Cons ci ratio: 7.537222e-02	ci left: 9.207080e-03	ci right 9.931696e-03	k: 2678	n:280000
KS ci ratio: 1.348083e-01	ci left: 2.807705e-03	ci right 3.216975e-03	k: 842	n:280000
C14orf105   280000 perm   87 sec   (3204 perm/sec)   p_kst 3.007143e-03   p_cons 9.564286e-03   p_joint 6.500000e-04

Joint ci ratio: 2.828075e-01	ci left: 5.685487e-04	ci right 7.589014e-04	k: 191	n:290000
Cons ci ratio: 7.404350e-02	ci left: 9.217831e-03	ci right 9.929953e-03	k: 2775	n:290000
KS ci ratio: 1.318672e-01	ci left: 2.837554e-03	ci right 3.241444e-03	k: 880	n:290000
C14orf105   290000 perm   92 sec   (3152 perm/sec)   p_kst 3.034483e-03   p_cons 9.568966e-03   p_joint 6.586207e-04

Joint ci ratio: 2.791963e-01	ci left: 5.650893e-04	ci right 7.514430e-04	k: 196	n:300000
Cons ci ratio: 7.283388e-02	ci left: 9.214876e-03	ci right 9.914647e-03	k: 2868	n:300000
KS ci ratio: 1.295353e-01	ci left: 2.846149e-03	ci right 3.243547e-03	k: 912	n:300000
C14orf105   300000 perm   96 sec   (3118 perm/sec)   p_kst 3.040000e-03   p_cons 9.560000e-03   p_joint 6.533333e-04

Joint ci ratio: 2.736937e-01	ci left: 5.708787e-04	ci right 7.547933e-04	k: 204	n:310000
Cons ci ratio: 7.166945e-02	ci left: 9.215369e-03	ci right 9.903524e-03	k: 2962	n:310000
KS ci ratio: 1.273229e-01	ci left: 2.854248e-03	ci right 3.245456e-03	k: 944	n:310000
C14orf105   310000 perm   101 sec   (3080 perm/sec)   p_kst 3.045161e-03   p_cons 9.554839e-03   p_joint 6.580645e-04

Joint ci ratio: 2.666318e-01	ci left: 5.850865e-04	ci right 7.679025e-04	k: 215	n:320000
Cons ci ratio: 7.058245e-02	ci left: 9.209774e-03	ci right 9.886652e-03	k: 3054	n:320000
KS ci ratio: 1.246456e-01	ci left: 2.889143e-03	ci right 3.276193e-03	k: 985	n:320000
C14orf105   320000 perm   105 sec   (3043 perm/sec)   p_kst 3.078125e-03   p_cons 9.543750e-03   p_joint 6.718750e-04

Joint ci ratio: 2.630043e-01	ci left: 5.843315e-04	ci right 7.640189e-04	k: 221	n:330000
Cons ci ratio: 6.946550e-02	ci left: 9.225439e-03	ci right 9.892307e-03	k: 3153	n:330000
KS ci ratio: 1.226706e-01	ci left: 2.895564e-03	ci right 3.276881e-03	k: 1017	n:330000
C14orf105   330000 perm   110 sec   (3007 perm/sec)   p_kst 3.081818e-03   p_cons 9.554545e-03   p_joint 6.696970e-04

Joint ci ratio: 2.567194e-01	ci left: 5.973917e-04	ci right 7.760023e-04	k: 232	n:340000
Cons ci ratio: 6.828349e-02	ci left: 9.272068e-03	ci right 9.930449e-03	k: 3263	n:340000
KS ci ratio: 1.206715e-01	ci left: 2.907358e-03	ci right 3.283543e-03	k: 1051	n:340000
C14orf105   340000 perm   114 sec   (2972 perm/sec)   p_kst 3.091176e-03   p_cons 9.597059e-03   p_joint 6.823529e-04

Joint ci ratio: 2.743745e-01	ci left: 5.029720e-04	ci right 6.654820e-04	k: 203	n:350000
Cons ci ratio: 6.734143e-02	ci left: 9.265550e-03	ci right 9.914037e-03	k: 3355	n:350000
KS ci ratio: 1.188219e-01	ci left: 2.915753e-03	ci right 3.286835e-03	k: 1084	n:350000
C14orf105   350000 perm   119 sec   (2935 perm/sec)   p_kst 3.097143e-03   p_cons 9.585714e-03   p_joint 5.800000e-04

Joint ci ratio: 2.710730e-01	ci left: 5.019398e-04	ci right 6.618328e-04	k: 208	n:360000
Cons ci ratio: 6.642758e-02	ci left: 9.262186e-03	ci right 9.901301e-03	k: 3448	n:360000
KS ci ratio: 1.177435e-01	ci left: 2.888669e-03	ci right 3.252736e-03	k: 1104	n:360000
C14orf105   360000 perm   124 sec   (2899 perm/sec)   p_kst 3.066667e-03   p_cons 9.577778e-03   p_joint 5.777778e-04

Joint ci ratio: 2.678878e-01	ci left: 5.009745e-04	ci right 6.583698e-04	k: 213	n:370000
Cons ci ratio: 6.554996e-02	ci left: 9.259059e-03	ci right 9.889198e-03	k: 3541	n:370000
KS ci ratio: 1.158194e-01	ci left: 2.907677e-03	ci right 3.267742e-03	k: 1141	n:370000
C14orf105   370000 perm   129 sec   (2864 perm/sec)   p_kst 3.083784e-03   p_cons 9.570270e-03   p_joint 5.756757e-04

Joint ci ratio: 2.654194e-01	ci left: 4.976135e-04	ci right 6.522728e-04	k: 217	n:380000
Cons ci ratio: 6.466135e-02	ci left: 9.269098e-03	ci right 9.891047e-03	k: 3639	n:380000
KS ci ratio: 1.143765e-01	ci left: 2.905278e-03	ci right 3.260261e-03	k: 1170	n:380000
C14orf105   380000 perm   134 sec   (2827 perm/sec)   p_kst 3.078947e-03   p_cons 9.576316e-03   p_joint 5.710526e-04

Joint ci ratio: 2.612576e-01	ci left: 5.016183e-04	ci right 6.546785e-04	k: 224	n:390000
Cons ci ratio: 6.374768e-02	ci left: 9.296341e-03	ci right 9.910978e-03	k: 3744	n:390000
KS ci ratio: 1.130335e-01	ci left: 2.900536e-03	ci right 3.250501e-03	k: 1198	n:390000
C14orf105   390000 perm   140 sec   (2789 perm/sec)   p_kst 3.071795e-03   p_cons 9.600000e-03   p_joint 5.743590e-04

Joint ci ratio: 2.584025e-01	ci left: 5.007638e-04	ci right 6.516238e-04	k: 229	n:400000
Cons ci ratio: 6.290467e-02	ci left: 9.312436e-03	ci right 9.919699e-03	k: 3845	n:400000
KS ci ratio: 1.115091e-01	ci left: 2.908207e-03	ci right 3.254054e-03	k: 1231	n:400000
C14orf105   400000 perm   146 sec   (2737 perm/sec)   p_kst 3.077500e-03   p_cons 9.612500e-03   p_joint 5.725000e-04

Joint ci ratio: 2.567344e-01	ci left: 4.953946e-04	ci right 6.435193e-04	k: 232	n:410000
Cons ci ratio: 6.216586e-02	ci left: 9.306184e-03	ci right 9.905655e-03	k: 3937	n:410000
KS ci ratio: 1.104836e-01	ci left: 2.891814e-03	ci right 3.232343e-03	k: 1254	n:410000
C14orf105   410000 perm   152 sec   (2705 perm/sec)   p_kst 3.058537e-03   p_cons 9.602439e-03   p_joint 5.658537e-04

Joint ci ratio: 2.529623e-01	ci left: 4.992018e-04	ci right 6.459261e-04	k: 239	n:420000
Cons ci ratio: 6.138331e-02	ci left: 9.321372e-03	ci right 9.913994e-03	k: 4038	n:420000
KS ci ratio: 1.089316e-01	ci left: 2.906324e-03	ci right 3.243446e-03	k: 1290	n:420000
C14orf105   420000 perm   157 sec   (2674 perm/sec)   p_kst 3.071429e-03   p_cons 9.614286e-03   p_joint 5.690476e-04

Joint ci ratio: 2.493517e-01	ci left: 5.028471e-04	ci right 6.482060e-04	k: 246	n:430000
Cons ci ratio: 6.061480e-02	ci left: 9.340480e-03	ci right 9.926622e-03	k: 4141	n:430000
KS ci ratio: 1.078927e-01	ci left: 2.895298e-03	ci right 3.227734e-03	k: 1315	n:430000
C14orf105   430000 perm   163 sec   (2645 perm/sec)   p_kst 3.058140e-03   p_cons 9.630233e-03   p_joint 5.720930e-04

Joint ci ratio: 2.468658e-01	ci left: 5.020758e-04	ci right 6.455428e-04	k: 251	n:440000
Cons ci ratio: 5.987446e-02	ci left: 9.358763e-03	ci right 9.938631e-03	k: 4244	n:440000
KS ci ratio: 1.067632e-01	ci left: 2.891423e-03	ci right 3.219720e-03	k: 1343	n:440000
C14orf105   440000 perm   168 sec   (2616 perm/sec)   p_kst 3.052273e-03   p_cons 9.645455e-03   p_joint 5.704545e-04

Joint ci ratio: 2.444528e-01	ci left: 5.013457e-04	ci right 6.429912e-04	k: 256	n:450000
Cons ci ratio: 5.924320e-02	ci left: 9.350000e-03	ci right 9.923007e-03	k: 4335	n:450000
KS ci ratio: 1.053608e-01	ci left: 2.905048e-03	ci right 3.230291e-03	k: 1379	n:450000
C14orf105   450000 perm   174 sec   (2585 perm/sec)   p_kst 3.064444e-03   p_cons 9.633333e-03   p_joint 5.688889e-04

Joint ci ratio: 2.393821e-01	ci left: 5.129110e-04	ci right 6.543723e-04	k: 267	n:460000
Cons ci ratio: 5.849821e-02	ci left: 9.384496e-03	ci right 9.952141e-03	k: 4446	n:460000
KS ci ratio: 1.042340e-01	ci left: 2.905403e-03	ci right 3.226994e-03	k: 1409	n:460000
C14orf105   460000 perm   180 sec   (2556 perm/sec)   p_kst 3.063043e-03   p_cons 9.665217e-03   p_joint 5.804348e-04

Joint ci ratio: 2.363155e-01	ci left: 5.160042e-04	ci right 6.562289e-04	k: 274	n:470000
Cons ci ratio: 5.782549e-02	ci left: 9.402887e-03	ci right 9.964885e-03	k: 4550	n:470000
KS ci ratio: 1.031067e-01	ci left: 2.907833e-03	ci right 3.226001e-03	k: 1440	n:470000
C14orf105   470000 perm   186 sec   (2528 perm/sec)   p_kst 3.063830e-03   p_cons 9.680851e-03   p_joint 5.829787e-04

Joint ci ratio: 2.341962e-01	ci left: 5.150568e-04	ci right 6.535870e-04	k: 279	n:480000
Cons ci ratio: 5.727493e-02	ci left: 9.387686e-03	ci right 9.943257e-03	k: 4638	n:480000
KS ci ratio: 1.022244e-01	ci left: 2.897999e-03	ci right 3.212214e-03	k: 1465	n:480000
C14orf105   480000 perm   192 sec   (2495 perm/sec)   p_kst 3.052083e-03   p_cons 9.662500e-03   p_joint 5.812500e-04

Joint ci ratio: 2.325415e-01	ci left: 5.122314e-04	ci right 6.488883e-04	k: 283	n:490000
Cons ci ratio: 5.668534e-02	ci left: 9.391240e-03	ci right 9.941112e-03	k: 4735	n:490000
KS ci ratio: 1.010251e-01	ci left: 2.908470e-03	ci right 3.219901e-03	k: 1500	n:490000
C14orf105   490000 perm   199 sec   (2468 perm/sec)   p_kst 3.061224e-03   p_cons 9.663265e-03   p_joint 5.775510e-04

Joint ci ratio: 2.289415e-01	ci left: 5.189466e-04	ci right 6.549489e-04	k: 292	n:500000
Cons ci ratio: 5.608431e-02	ci left: 9.404541e-03	ci right 9.949164e-03	k: 4837	n:500000
KS ci ratio: 9.993226e-02	ci left: 2.914642e-03	ci right 3.223161e-03	k: 1533	n:500000
C14orf105   500000 perm   205 sec   (2443 perm/sec)   p_kst 3.066000e-03   p_cons 9.674000e-03   p_joint 5.840000e-04

Joint ci ratio: 2.262545e-01	ci left: 5.217142e-04	ci right 6.566133e-04	k: 299	n:510000
Cons ci ratio: 5.552470e-02	ci left: 9.409614e-03	ci right 9.948919e-03	k: 4935	n:510000
KS ci ratio: 9.893754e-02	ci left: 2.916765e-03	ci right 3.222257e-03	k: 1564	n:510000
C14orf105   510000 perm   212 sec   (2409 perm/sec)   p_kst 3.066667e-03   p_cons 9.676471e-03   p_joint 5.862745e-04

Joint ci ratio: 2.240253e-01	ci left: 5.225690e-04	ci right 6.561742e-04	k: 305	n:520000
Cons ci ratio: 5.501463e-02	ci left: 9.403137e-03	ci right 9.936963e-03	k: 5027	n:520000
KS ci ratio: 9.772656e-02	ci left: 2.933830e-03	ci right 3.237133e-03	k: 1603	n:520000
C14orf105   520000 perm   220 sec   (2366 perm/sec)   p_kst 3.082692e-03   p_cons 9.667308e-03   p_joint 5.865385e-04

Joint ci ratio: 2.225757e-01	ci left: 5.198342e-04	ci right 6.517623e-04	k: 309	n:530000
Cons ci ratio: 5.455064e-02	ci left: 9.385758e-03	ci right 9.913962e-03	k: 5113	n:530000
KS ci ratio: 9.697430e-02	ci left: 2.924496e-03	ci right 3.224373e-03	k: 1628	n:530000
C14orf105   530000 perm   226 sec   (2343 perm/sec)   p_kst 3.071698e-03   p_cons 9.647170e-03   p_joint 5.830189e-04

Joint ci ratio: 2.208023e-01	ci left: 5.189528e-04	ci right 6.494653e-04	k: 314	n:540000
Cons ci ratio: 5.409295e-02	ci left: 9.370869e-03	ci right 9.893672e-03	k: 5200	n:540000
KS ci ratio: 9.597758e-02	ci left: 2.931783e-03	ci right 3.229144e-03	k: 1662	n:540000
C14orf105   540000 perm   233 sec   (2320 perm/sec)   p_kst 3.077778e-03   p_cons 9.629630e-03   p_joint 5.814815e-04

Joint ci ratio: 2.187290e-01	ci left: 5.198259e-04	ci right 6.491654e-04	k: 320	n:550000
Cons ci ratio: 5.365683e-02	ci left: 9.352951e-03	ci right 9.870417e-03	k: 5285	n:550000
KS ci ratio: 9.509532e-02	ci left: 2.933494e-03	ci right 3.228142e-03	k: 1693	n:550000
C14orf105   550000 perm   240 sec   (2296 perm/sec)   p_kst 3.078182e-03   p_cons 9.609091e-03   p_joint 5.818182e-04

Joint ci ratio: 2.150740e-01	ci left: 5.291194e-04	ci right 6.582810e-04	k: 331	n:560000
Cons ci ratio: 5.317115e-02	ci left: 9.356835e-03	ci right 9.869686e-03	k: 5382	n:560000
KS ci ratio: 9.393699e-02	ci left: 2.954339e-03	ci right 3.247267e-03	k: 1735	n:560000
C14orf105   560000 perm   247 sec   (2267 perm/sec)   p_kst 3.098214e-03   p_cons 9.610714e-03   p_joint 5.910714e-04

Joint ci ratio: 2.125282e-01	ci left: 5.331204e-04	ci right 6.615175e-04	k: 339	n:570000
Cons ci ratio: 5.265963e-02	ci left: 9.374455e-03	ci right 9.883179e-03	k: 5487	n:570000
KS ci ratio: 9.274151e-02	ci left: 2.979615e-03	ci right 3.271085e-03	k: 1780	n:570000
C14orf105   570000 perm   255 sec   (2234 perm/sec)   p_kst 3.122807e-03   p_cons 9.626316e-03   p_joint 5.947368e-04

Joint ci ratio: 2.115973e-01	ci left: 5.288263e-04	ci right 6.555589e-04	k: 342	n:580000
Cons ci ratio: 5.220502e-02	ci left: 9.376174e-03	ci right 9.880466e-03	k: 5583	n:580000
KS ci ratio: 9.191935e-02	ci left: 2.982141e-03	ci right 3.271133e-03	k: 1812	n:580000
C14orf105   580000 perm   262 sec   (2214 perm/sec)   p_kst 3.124138e-03   p_cons 9.625862e-03   p_joint 5.896552e-04

Joint ci ratio: 2.091717e-01	ci left: 5.327082e-04	ci right 6.587203e-04	k: 350	n:590000
Cons ci ratio: 5.178500e-02	ci left: 9.369487e-03	ci right 9.869244e-03	k: 5674	n:590000
KS ci ratio: 9.106918e-02	ci left: 2.987905e-03	ci right 3.274635e-03	k: 1846	n:590000
C14orf105   590000 perm   269 sec   (2192 perm/sec)   p_kst 3.128814e-03   p_cons 9.616949e-03   p_joint 5.932203e-04

Joint ci ratio: 2.068276e-01	ci left: 5.364687e-04	ci right 6.617683e-04	k: 358	n:600000
Cons ci ratio: 5.133453e-02	ci left: 9.377848e-03	ci right 9.873571e-03	k: 5774	n:600000
KS ci ratio: 9.021811e-02	ci left: 2.995118e-03	ci right 3.279713e-03	k: 1881	n:600000
C14orf105   600000 perm   276 sec   (2171 perm/sec)   p_kst 3.135000e-03   p_cons 9.623333e-03   p_joint 5.966667e-04

Joint ci ratio: 2.048400e-01	ci left: 5.385581e-04	ci right 6.629856e-04	k: 365	n:610000
Cons ci ratio: 5.098330e-02	ci left: 9.353580e-03	ci right 9.844537e-03	k: 5854	n:610000
KS ci ratio: 8.925046e-02	ci left: 3.011724e-03	ci right 3.294667e-03	k: 1922	n:610000
C14orf105   610000 perm   284 sec   (2151 perm/sec)   p_kst 3.150820e-03   p_cons 9.596721e-03   p_joint 5.983607e-04

Joint ci ratio: 2.031814e-01	ci left: 5.390548e-04	ci right 6.624634e-04	k: 371	n:620000
Cons ci ratio: 5.055325e-02	ci left: 9.361959e-03	ci right 9.849091e-03	k: 5954	n:620000
KS ci ratio: 8.858518e-02	ci left: 3.008882e-03	ci right 3.289341e-03	k: 1951	n:620000
C14orf105   620000 perm   291 sec   (2131 perm/sec)   p_kst 3.146774e-03   p_cons 9.603226e-03   p_joint 5.983871e-04

Joint ci ratio: 2.020981e-01	ci left: 5.365253e-04	ci right 6.586191e-04	k: 375	n:630000
Cons ci ratio: 5.012137e-02	ci left: 9.374793e-03	ci right 9.858304e-03	k: 6057	n:630000
KS ci ratio: 8.806845e-02	ci left: 2.996822e-03	ci right 3.274445e-03	k: 1974	n:630000
C14orf105   630000 perm   298 sec   (2112 perm/sec)   p_kst 3.133333e-03   p_cons 9.614286e-03   p_joint 5.952381e-04

Joint ci ratio: 2.010319e-01	ci left: 5.340766e-04	ci right 6.548933e-04	k: 379	n:640000
Cons ci ratio: 4.975748e-02	ci left: 9.365636e-03	ci right 9.845068e-03	k: 6146	n:640000
KS ci ratio: 8.745096e-02	ci left: 2.992786e-03	ci right 3.267992e-03	k: 2002	n:640000
C14orf105   640000 perm   306 sec   (2093 perm/sec)   p_kst 3.128125e-03   p_cons 9.603125e-03   p_joint 5.921875e-04

Joint ci ratio: 1.997224e-01	ci left: 5.331664e-04	ci right 6.528958e-04	k: 384	n:650000
Cons ci ratio: 4.935748e-02	ci left: 9.373490e-03	ci right 9.849357e-03	k: 6246	n:650000
KS ci ratio: 8.667520e-02	ci left: 3.000923e-03	ci right 3.274304e-03	k: 2038	n:650000
C14orf105   650000 perm   314 sec   (2072 perm/sec)   p_kst 3.135385e-03   p_cons 9.609231e-03   p_joint 5.907692e-04

Joint ci ratio: 1.976788e-01	ci left: 5.366064e-04	ci right 6.557268e-04	k: 392	n:660000
Cons ci ratio: 4.900205e-02	ci left: 9.367650e-03	ci right 9.839699e-03	k: 6337	n:660000
KS ci ratio: 8.587822e-02	ci left: 3.011789e-03	ci right 3.283511e-03	k: 2076	n:660000
C14orf105   660000 perm   322 sec   (2050 perm/sec)   p_kst 3.145455e-03   p_cons 9.601515e-03   p_joint 5.939394e-04

Joint ci ratio: 1.961869e-01	ci left: 5.371111e-04	ci right 6.553361e-04	k: 398	n:670000
Cons ci ratio: 4.864656e-02	ci left: 9.364946e-03	ci right 9.833339e-03	k: 6430	n:670000
KS ci ratio: 8.508265e-02	ci left: 3.023802e-03	ci right 3.293955e-03	k: 2115	n:670000
C14orf105   670000 perm   332 sec   (2020 perm/sec)   p_kst 3.156716e-03   p_cons 9.597015e-03   p_joint 5.940299e-04

Joint ci ratio: 1.952111e-01	ci left: 5.348065e-04	ci right 6.518691e-04	k: 402	n:680000
Cons ci ratio: 4.829122e-02	ci left: 9.365239e-03	ci right 9.830130e-03	k: 6525	n:680000
KS ci ratio: 8.448595e-02	ci left: 3.022516e-03	ci right 3.290568e-03	k: 2145	n:680000
C14orf105   680000 perm   340 sec   (2000 perm/sec)   p_kst 3.154412e-03   p_cons 9.595588e-03   p_joint 5.911765e-04

Joint ci ratio: 1.940114e-01	ci left: 5.339489e-04	ci right 6.500207e-04	k: 407	n:690000
Cons ci ratio: 4.792894e-02	ci left: 9.371264e-03	ci right 9.832868e-03	k: 6624	n:690000
KS ci ratio: 8.388230e-02	ci left: 3.022693e-03	ci right 3.288751e-03	k: 2176	n:690000
C14orf105   690000 perm   348 sec   (1984 perm/sec)   p_kst 3.153623e-03   p_cons 9.600000e-03   p_joint 5.898551e-04

Joint ci ratio: 1.919059e-01	ci left: 5.385573e-04	ci right 6.542121e-04	k: 416	n:700000
Cons ci ratio: 4.758541e-02	ci left: 9.372894e-03	ci right 9.831178e-03	k: 6720	n:700000
KS ci ratio: 8.302777e-02	ci left: 3.042457e-03	ci right 3.307395e-03	k: 2221	n:700000
C14orf105   700000 perm   356 sec   (1968 perm/sec)   p_kst 3.172857e-03   p_cons 9.600000e-03   p_joint 5.942857e-04

Joint ci ratio: 1.909923e-01	ci left: 5.363357e-04	ci right 6.509014e-04	k: 420	n:710000
Cons ci ratio: 4.723168e-02	ci left: 9.381449e-03	ci right 9.836650e-03	k: 6821	n:710000
KS ci ratio: 8.250975e-02	ci left: 3.038226e-03	ci right 3.301065e-03	k: 2249	n:710000
C14orf105   710000 perm   364 sec   (1953 perm/sec)   p_kst 3.167606e-03   p_cons 9.607042e-03   p_joint 5.915493e-04

Joint ci ratio: 1.892029e-01	ci left: 5.394690e-04	ci right 6.535003e-04	k: 428	n:720000
Cons ci ratio: 4.686863e-02	ci left: 9.396643e-03	ci right 9.848982e-03	k: 6927	n:720000
KS ci ratio: 8.192918e-02	ci left: 3.039559e-03	ci right 3.300575e-03	k: 2281	n:720000
C14orf105   720000 perm   372 sec   (1938 perm/sec)   p_kst 3.168056e-03   p_cons 9.620833e-03   p_joint 5.944444e-04

Joint ci ratio: 1.881100e-01	ci left: 5.386048e-04	ci right 6.517207e-04	k: 433	n:730000
Cons ci ratio: 4.655060e-02	ci left: 9.396539e-03	ci right 9.845721e-03	k: 7022	n:730000
KS ci ratio: 8.143134e-02	ci left: 3.035494e-03	ci right 3.294501e-03	k: 2309	n:730000
C14orf105   730000 perm   380 sec   (1922 perm/sec)   p_kst 3.163014e-03   p_cons 9.619178e-03   p_joint 5.931507e-04

Joint ci ratio: 1.868230e-01	ci left: 5.390540e-04	ci right 6.514018e-04	k: 439	n:740000
Cons ci ratio: 4.618003e-02	ci left: 9.420494e-03	ci right 9.867141e-03	k: 7135	n:740000
KS ci ratio: 8.085577e-02	ci left: 3.038164e-03	ci right 3.295480e-03	k: 2342	n:740000
C14orf105   740000 perm   388 sec   (1907 perm/sec)   p_kst 3.164865e-03   p_cons 9.641892e-03   p_joint 5.932432e-04

Joint ci ratio: 1.849407e-01	ci left: 5.433083e-04	ci right 6.552740e-04	k: 448	n:750000
Cons ci ratio: 4.589174e-02	ci left: 9.413505e-03	ci right 9.856961e-03	k: 7225	n:750000
KS ci ratio: 8.025836e-02	ci left: 3.043382e-03	ci right 3.299146e-03	k: 2377	n:750000
C14orf105   750000 perm   396 sec   (1892 perm/sec)   p_kst 3.169333e-03   p_cons 9.633333e-03   p_joint 5.973333e-04

Joint ci ratio: 1.841226e-01	ci left: 5.411795e-04	ci right 6.521581e-04	k: 452	n:760000
Cons ci ratio: 4.556164e-02	ci left: 9.426223e-03	ci right 9.867000e-03	k: 7330	n:760000
KS ci ratio: 7.989017e-02	ci left: 3.031704e-03	ci right 3.285264e-03	k: 2399	n:760000
C14orf105   760000 perm   405 sec   (1877 perm/sec)   p_kst 3.156579e-03   p_cons 9.644737e-03   p_joint 5.947368e-04

Joint ci ratio: 1.825178e-01	ci left: 5.440641e-04	ci right 6.545543e-04	k: 460	n:770000
Cons ci ratio: 4.528471e-02	ci left: 9.419359e-03	ci right 9.857069e-03	k: 7420	n:770000
KS ci ratio: 7.941197e-02	ci left: 3.029243e-03	ci right 3.281011e-03	k: 2428	n:770000
C14orf105   770000 perm   414 sec   (1859 perm/sec)   p_kst 3.153247e-03   p_cons 9.636364e-03   p_joint 5.974026e-04

Joint ci ratio: 1.813415e-01	ci left: 5.444310e-04	ci right 6.542048e-04	k: 466	n:780000
Cons ci ratio: 4.500067e-02	ci left: 9.417751e-03	ci right 9.852569e-03	k: 7514	n:780000
KS ci ratio: 7.884577e-02	ci left: 3.034391e-03	ci right 3.284706e-03	k: 2463	n:780000
C14orf105   780000 perm   424 sec   (1838 perm/sec)   p_kst 3.157692e-03   p_cons 9.633333e-03   p_joint 5.974359e-04

Joint ci ratio: 1.798077e-01	ci left: 5.472084e-04	ci right 6.565075e-04	k: 474	n:790000
Cons ci ratio: 4.476054e-02	ci left: 9.399918e-03	ci right 9.831537e-03	k: 7595	n:790000
KS ci ratio: 7.818174e-02	ci left: 3.048103e-03	ci right 3.297335e-03	k: 2505	n:790000
C14orf105   790000 perm   434 sec   (1819 perm/sec)   p_kst 3.170886e-03   p_cons 9.613924e-03   p_joint 6.000000e-04

Joint ci ratio: 1.786828e-01	ci left: 5.475318e-04	ci right 6.561372e-04	k: 480	n:800000
Cons ci ratio: 4.445118e-02	ci left: 9.413443e-03	ci right 9.842619e-03	k: 7701	n:800000
KS ci ratio: 7.761064e-02	ci left: 3.055351e-03	ci right 3.303268e-03	k: 2542	n:800000
C14orf105   800000 perm   445 sec   (1799 perm/sec)   p_kst 3.177500e-03   p_cons 9.626250e-03   p_joint 6.000000e-04

Joint ci ratio: 1.784979e-01	ci left: 5.419514e-04	ci right 6.493267e-04	k: 481	n:810000
Cons ci ratio: 4.414245e-02	ci left: 9.429085e-03	ci right 9.855914e-03	k: 7809	n:810000
KS ci ratio: 7.718705e-02	ci left: 3.051529e-03	ci right 3.297724e-03	k: 2570	n:810000
C14orf105   810000 perm   454 sec   (1785 perm/sec)   p_kst 3.172840e-03   p_cons 9.640741e-03   p_joint 5.938272e-04

Joint ci ratio: 1.773971e-01	ci left: 5.423334e-04	ci right 6.490507e-04	k: 487	n:820000
Cons ci ratio: 4.385404e-02	ci left: 9.438325e-03	ci right 9.862710e-03	k: 7912	n:820000
KS ci ratio: 7.684450e-02	ci left: 3.041823e-03	ci right 3.286098e-03	k: 2593	n:820000
C14orf105   820000 perm   463 sec   (1772 perm/sec)   p_kst 3.162195e-03   p_cons 9.648780e-03   p_joint 5.939024e-04

Joint ci ratio: 1.761382e-01	ci left: 5.438599e-04	ci right 6.500373e-04	k: 494	n:830000
Cons ci ratio: 4.363722e-02	ci left: 9.418748e-03	ci right 9.840106e-03	k: 7991	n:830000
KS ci ratio: 7.641865e-02	ci left: 3.039445e-03	ci right 3.282115e-03	k: 2622	n:830000
C14orf105   830000 perm   472 sec   (1758 perm/sec)   p_kst 3.159036e-03   p_cons 9.627711e-03   p_joint 5.951807e-04

Joint ci ratio: 1.754311e-01	ci left: 5.419377e-04	ci right 6.472700e-04	k: 498	n:840000
Cons ci ratio: 4.335313e-02	ci left: 9.430262e-03	ci right 9.849320e-03	k: 8096	n:840000
KS ci ratio: 7.597106e-02	ci left: 3.039463e-03	ci right 3.280650e-03	k: 2653	n:840000
C14orf105   840000 perm   481 sec   (1746 perm/sec)   p_kst 3.158333e-03   p_cons 9.638095e-03   p_joint 5.928571e-04

Joint ci ratio: 1.749064e-01	ci left: 5.389365e-04	ci right 6.433392e-04	k: 501	n:850000
Cons ci ratio: 4.312764e-02	ci left: 9.418235e-03	ci right 9.834528e-03	k: 8181	n:850000
KS ci ratio: 7.565856e-02	ci left: 3.029095e-03	ci right 3.268428e-03	k: 2675	n:850000
C14orf105   850000 perm   491 sec   (1730 perm/sec)   p_kst 3.147059e-03   p_cons 9.624706e-03   p_joint 5.894118e-04

Joint ci ratio: 1.730205e-01	ci left: 5.449038e-04	ci right 6.492053e-04	k: 512	n:860000
Cons ci ratio: 4.284811e-02	ci left: 9.431804e-03	ci right 9.845928e-03	k: 8288	n:860000
KS ci ratio: 7.514063e-02	ci left: 3.036086e-03	ci right 3.274257e-03	k: 2712	n:860000
C14orf105   860000 perm   501 sec   (1718 perm/sec)   p_kst 3.153488e-03   p_cons 9.637209e-03   p_joint 5.953488e-04

Joint ci ratio: 1.718519e-01	ci left: 5.463393e-04	ci right 6.501361e-04	k: 519	n:870000
Cons ci ratio: 4.256882e-02	ci left: 9.447343e-03	ci right 9.859380e-03	k: 8397	n:870000
KS ci ratio: 7.468770e-02	ci left: 3.038409e-03	ci right 3.275263e-03	k: 2745	n:870000
C14orf105   870000 perm   510 sec   (1705 perm/sec)   p_kst 3.155172e-03   p_cons 9.651724e-03   p_joint 5.965517e-04

Joint ci ratio: 1.700621e-01	ci left: 5.520962e-04	ci right 6.557823e-04	k: 530	n:880000
Cons ci ratio: 4.230999e-02	ci left: 9.455791e-03	ci right 9.865628e-03	k: 8500	n:880000
KS ci ratio: 7.425627e-02	ci left: 3.039568e-03	ci right 3.275085e-03	k: 2777	n:880000
C14orf105   880000 perm   521 sec   (1688 perm/sec)   p_kst 3.155682e-03   p_cons 9.659091e-03   p_joint 6.022727e-04

Joint ci ratio: 1.683270e-01	ci left: 5.577292e-04	ci right 6.612962e-04	k: 541	n:890000
Cons ci ratio: 4.202624e-02	ci left: 9.477400e-03	ci right 9.885351e-03	k: 8615	n:890000
KS ci ratio: 7.375328e-02	ci left: 3.047322e-03	ci right 3.281772e-03	k: 2815	n:890000
C14orf105   890000 perm   531 sec   (1676 perm/sec)   p_kst 3.162921e-03   p_cons 9.679775e-03   p_joint 6.078652e-04

Joint ci ratio: 1.667950e-01	ci left: 5.621775e-04	ci right 6.655250e-04	k: 551	n:900000
Cons ci ratio: 4.181589e-02	ci left: 9.467748e-03	ci right 9.873195e-03	k: 8702	n:900000
KS ci ratio: 7.323464e-02	ci left: 3.057092e-03	ci right 3.290569e-03	k: 2855	n:900000
C14orf105   900000 perm   541 sec   (1664 perm/sec)   p_kst 3.172222e-03   p_cons 9.668889e-03   p_joint 6.122222e-04

Joint ci ratio: 1.663439e-01	ci left: 5.591589e-04	ci right 6.616456e-04	k: 554	n:910000
Cons ci ratio: 4.151813e-02	ci left: 9.499641e-03	ci right 9.903489e-03	k: 8827	n:910000
KS ci ratio: 7.294187e-02	ci left: 3.048309e-03	ci right 3.280146e-03	k: 2878	n:910000
C14orf105   910000 perm   551 sec   (1653 perm/sec)   p_kst 3.162637e-03   p_cons 9.700000e-03   p_joint 6.087912e-04

Joint ci ratio: 1.648649e-01	ci left: 5.635003e-04	ci right 6.657733e-04	k: 564	n:920000
Cons ci ratio: 4.126390e-02	ci left: 9.513638e-03	ci right 9.915545e-03	k: 8936	n:920000
KS ci ratio: 7.247742e-02	ci left: 3.054662e-03	ci right 3.285440e-03	k: 2915	n:920000
C14orf105   920000 perm   561 sec   (1641 perm/sec)   p_kst 3.168478e-03   p_cons 9.713043e-03   p_joint 6.130435e-04

Joint ci ratio: 1.648654e-01	ci left: 5.574410e-04	ci right 6.586147e-04	k: 564	n:930000
Cons ci ratio: 4.108312e-02	ci left: 9.495411e-03	ci right 9.894749e-03	k: 9015	n:930000
KS ci ratio: 7.219360e-02	ci left: 3.046100e-03	ci right 3.275292e-03	k: 2938	n:930000
C14orf105   930000 perm   571 sec   (1628 perm/sec)   p_kst 3.159140e-03   p_cons 9.693548e-03   p_joint 6.064516e-04

Joint ci ratio: 1.634252e-01	ci left: 5.617122e-04	ci right 6.626829e-04	k: 574	n:940000
Cons ci ratio: 4.086389e-02	ci left: 9.496530e-03	ci right 9.893734e-03	k: 9112	n:940000
KS ci ratio: 7.165872e-02	ci left: 3.059662e-03	ci right 3.288098e-03	k: 2982	n:940000
C14orf105   940000 perm   582 sec   (1616 perm/sec)   p_kst 3.172340e-03   p_cons 9.693617e-03   p_joint 6.106383e-04

Joint ci ratio: 1.621608e-01	ci left: 5.648872e-04	ci right 6.655665e-04	k: 583	n:950000
Cons ci ratio: 4.066374e-02	ci left: 9.490337e-03	ci right 9.885293e-03	k: 9202	n:950000
KS ci ratio: 7.126556e-02	ci left: 3.061571e-03	ci right 3.288843e-03	k: 3015	n:950000
C14orf105   950000 perm   592 sec   (1605 perm/sec)   p_kst 3.173684e-03   p_cons 9.686316e-03   p_joint 6.136842e-04

Joint ci ratio: 1.607897e-01	ci left: 5.689988e-04	ci right 6.694706e-04	k: 593	n:960000
Cons ci ratio: 4.047969e-02	ci left: 9.478091e-03	ci right 9.870710e-03	k: 9286	n:960000
KS ci ratio: 7.082057e-02	ci left: 3.068560e-03	ci right 3.294871e-03	k: 3053	n:960000
C14orf105   960000 perm   602 sec   (1594 perm/sec)   p_kst 3.180208e-03   p_cons 9.672917e-03   p_joint 6.177083e-04

Joint ci ratio: 1.599837e-01	ci left: 5.690702e-04	ci right 6.690025e-04	k: 599	n:970000
Cons ci ratio: 4.021587e-02	ci left: 9.504885e-03	ci right 9.895989e-03	k: 9408	n:970000
KS ci ratio: 7.048680e-02	ci left: 3.066294e-03	ci right 3.291328e-03	k: 3082	n:970000
C14orf105   970000 perm   613 sec   (1583 perm/sec)   p_kst 3.177320e-03   p_cons 9.698969e-03   p_joint 6.175258e-04

Joint ci ratio: 1.587970e-01	ci left: 5.720808e-04	ci right 6.717255e-04	k: 608	n:980000
Cons ci ratio: 4.002292e-02	ci left: 9.499822e-03	ci right 9.888798e-03	k: 9499	n:980000
KS ci ratio: 7.015771e-02	ci left: 3.064077e-03	ci right 3.287855e-03	k: 3111	n:980000
C14orf105   980000 perm   623 sec   (1572 perm/sec)   p_kst 3.174490e-03   p_cons 9.692857e-03   p_joint 6.204082e-04

Joint ci ratio: 1.578921e-01	ci left: 5.730927e-04	ci right 6.722910e-04	k: 615	n:990000
Cons ci ratio: 3.982853e-02	ci left: 9.496866e-03	ci right 9.883789e-03	k: 9592	n:990000
KS ci ratio: 6.978862e-02	ci left: 3.065877e-03	ci right 3.288561e-03	k: 3144	n:990000
C14orf105   990000 perm   634 sec   (1562 perm/sec)   p_kst 3.175758e-03   p_cons 9.688889e-03   p_joint 6.212121e-04

Joint ci ratio: 1.566256e-01	ci left: 5.769684e-04	ci right 6.759612e-04	k: 625	n:1000000
Cons ci ratio: 3.963074e-02	ci left: 9.496943e-03	ci right 9.881905e-03	k: 9688	n:1000000
KS ci ratio: 6.945819e-02	ci left: 3.064696e-03	ci right 3.286198e-03	k: 3174	n:1000000
C14orf105   1000000 perm   644 sec   (1552 perm/sec)   p_kst 3.174000e-03   p_cons 9.688000e-03   p_joint 6.250000e-04

Joint ci ratio: 1.549024e-01	ci left: 5.845771e-04	ci right 6.836695e-04	k: 639	n:1010000
Cons ci ratio: 3.947663e-02	ci left: 9.477416e-03	ci right 9.860058e-03	k: 9764	n:1010000
KS ci ratio: 6.895994e-02	ci left: 3.079109e-03	ci right 3.299993e-03	k: 3220	n:1010000
C14orf105   1010000 perm   655 sec   (1541 perm/sec)   p_kst 3.188119e-03   p_cons 9.667327e-03   p_joint 6.326733e-04

Joint ci ratio: 1.539431e-01	ci left: 5.863861e-04	ci right 6.851128e-04	k: 647	n:1020000
Cons ci ratio: 3.928804e-02	ci left: 9.475749e-03	ci right 9.856455e-03	k: 9858	n:1020000
KS ci ratio: 6.860934e-02	ci left: 3.080718e-03	ci right 3.300549e-03	k: 3253	n:1020000
C14orf105   1020000 perm   667 sec   (1529 perm/sec)   p_kst 3.189216e-03   p_cons 9.664706e-03   p_joint 6.343137e-04

Joint ci ratio: 1.156306e-01	ci left: 1.050104e-03	ci right 1.179912e-03	k: 1147	n:1030000
Cons ci ratio: 3.909419e-02	ci left: 9.477965e-03	ci right 9.856839e-03	k: 9956	n:1030000
KS ci ratio: 6.825362e-02	ci left: 3.083254e-03	ci right 3.302079e-03	k: 3287	n:1030000
C14orf105   1030000 perm   678 sec   (1519 perm/sec)   p_kst 3.191262e-03   p_cons 9.666019e-03   p_joint 1.113592e-03

Joint ci ratio: 1.410314e-01	ci left: 6.899512e-04	ci right 7.955537e-04	k: 771	n:1040000
Cons ci ratio: 3.888367e-02	ci left: 9.489666e-03	ci right 9.866919e-03	k: 10064	n:1040000
KS ci ratio: 6.800613e-02	ci left: 3.076290e-03	ci right 3.293799e-03	k: 3311	n:1040000
C14orf105   1040000 perm   690 sec   (1508 perm/sec)   p_kst 3.183654e-03   p_cons 9.676923e-03   p_joint 7.413462e-04

Joint ci ratio: 1.407585e-01	ci left: 6.861366e-04	ci right 7.909349e-04	k: 774	n:1050000
Cons ci ratio: 3.871495e-02	ci left: 9.482284e-03	ci right 9.857572e-03	k: 10152	n:1050000
KS ci ratio: 6.774095e-02	ci left: 3.071334e-03	ci right 3.287612e-03	k: 3337	n:1050000
C14orf105   1050000 perm   701 sec   (1497 perm/sec)   p_kst 3.178095e-03   p_cons 9.668571e-03   p_joint 7.371429e-04

Joint ci ratio: 1.399482e-01	ci left: 6.878561e-04	ci right 7.922617e-04	k: 783	n:1060000
Cons ci ratio: 3.850289e-02	ci left: 9.497470e-03	ci right 9.871254e-03	k: 10264	n:1060000
KS ci ratio: 6.731843e-02	ci left: 3.081313e-03	ci right 3.296888e-03	k: 3379	n:1060000
C14orf105   1060000 perm   713 sec   (1488 perm/sec)   p_kst 3.187736e-03   p_cons 9.683019e-03   p_joint 7.386792e-04

Joint ci ratio: 1.500566e-01	ci left: 5.895523e-04	ci right 6.860813e-04	k: 681	n:1070000
Cons ci ratio: 3.833345e-02	ci left: 9.492938e-03	ci right 9.864864e-03	k: 10355	n:1070000
KS ci ratio: 6.701186e-02	ci left: 3.081001e-03	ci right 3.295534e-03	k: 3410	n:1070000
C14orf105   1070000 perm   724 sec   (1478 perm/sec)   p_kst 3.186916e-03   p_cons 9.677570e-03   p_joint 6.364486e-04

Joint ci ratio: 1.491841e-01	ci left: 5.912236e-04	ci right 6.874131e-04	k: 689	n:1080000
Cons ci ratio: 3.818654e-02	ci left: 9.478404e-03	ci right 9.848307e-03	k: 10435	n:1080000
KS ci ratio: 6.662211e-02	ci left: 3.088892e-03	ci right 3.302675e-03	k: 3450	n:1080000
C14orf105   1080000 perm   735 sec   (1469 perm/sec)   p_kst 3.194444e-03   p_cons 9.662037e-03   p_joint 6.379630e-04

Joint ci ratio: 1.489687e-01	ci left: 5.875659e-04	ci right 6.830100e-04	k: 691	n:1090000
Cons ci ratio: 3.801030e-02	ci left: 9.479590e-03	ci right 9.847793e-03	k: 10532	n:1090000
KS ci ratio: 6.636317e-02	ci left: 3.084912e-03	ci right 3.297558e-03	k: 3477	n:1090000
C14orf105   1090000 perm   747 sec   (1460 perm/sec)   p_kst 3.189908e-03   p_cons 9.662385e-03   p_joint 6.339450e-04

Joint ci ratio: 1.481149e-01	ci left: 5.892268e-04	ci right 6.843436e-04	k: 699	n:1100000
Cons ci ratio: 3.785985e-02	ci left: 9.469050e-03	ci right 9.835357e-03	k: 10616	n:1100000
KS ci ratio: 6.599398e-02	ci left: 3.091735e-03	ci right 3.303621e-03	k: 3516	n:1100000
C14orf105   1100000 perm   758 sec   (1451 perm/sec)   p_kst 3.196364e-03   p_cons 9.650909e-03   p_joint 6.354545e-04

Joint ci ratio: 1.474842e-01	ci left: 5.891240e-04	ci right 6.837835e-04	k: 705	n:1110000
Cons ci ratio: 3.770229e-02	ci left: 9.463166e-03	ci right 9.827688e-03	k: 10705	n:1110000
KS ci ratio: 6.574226e-02	ci left: 3.087806e-03	ci right 3.298584e-03	k: 3543	n:1110000
C14orf105   1110000 perm   770 sec   (1442 perm/sec)   p_kst 3.191892e-03   p_cons 9.644144e-03   p_joint 6.351351e-04

Joint ci ratio: 1.470683e-01	ci left: 5.873038e-04	ci right 6.813813e-04	k: 709	n:1120000
Cons ci ratio: 3.751686e-02	ci left: 9.472427e-03	ci right 9.835473e-03	k: 10811	n:1120000
KS ci ratio: 6.550259e-02	ci left: 3.083069e-03	ci right 3.292728e-03	k: 3569	n:1120000
C14orf105   1120000 perm   782 sec   (1433 perm/sec)   p_kst 3.186607e-03   p_cons 9.652679e-03   p_joint 6.330357e-04

Joint ci ratio: 1.460432e-01	ci left: 5.906315e-04	ci right 6.845251e-04	k: 719	n:1130000
Cons ci ratio: 3.733586e-02	ci left: 9.480652e-03	ci right 9.842222e-03	k: 10916	n:1130000
KS ci ratio: 6.522006e-02	ci left: 3.082770e-03	ci right 3.291470e-03	k: 3600	n:1130000
C14orf105   1130000 perm   793 sec   (1424 perm/sec)   p_kst 3.185841e-03   p_cons 9.660177e-03   p_joint 6.362832e-04

Joint ci ratio: 1.451387e-01	ci left: 5.930577e-04	ci right 6.867025e-04	k: 728	n:1140000
Cons ci ratio: 3.717790e-02	ci left: 9.478307e-03	ci right 9.838226e-03	k: 11009	n:1140000
KS ci ratio: 6.486059e-02	ci left: 3.090246e-03	ci right 3.298256e-03	k: 3640	n:1140000
C14orf105   1140000 perm   807 sec   (1413 perm/sec)   p_kst 3.192982e-03   p_cons 9.657018e-03   p_joint 6.385965e-04

Joint ci ratio: 1.446436e-01	ci left: 5.920909e-04	ci right 6.852366e-04	k: 733	n:1150000
Cons ci ratio: 3.702193e-02	ci left: 9.476006e-03	ci right 9.834296e-03	k: 11102	n:1150000
KS ci ratio: 6.456861e-02	ci left: 3.091606e-03	ci right 3.298735e-03	k: 3673	n:1150000
C14orf105   1150000 perm   819 sec   (1405 perm/sec)   p_kst 3.193913e-03   p_cons 9.653913e-03   p_joint 6.373913e-04

Joint ci ratio: 1.440560e-01	ci left: 5.919723e-04	ci right 6.846885e-04	k: 739	n:1160000
Cons ci ratio: 3.687123e-02	ci left: 9.472039e-03	ci right 9.828691e-03	k: 11193	n:1160000
KS ci ratio: 6.426315e-02	ci left: 3.094641e-03	ci right 3.300956e-03	k: 3708	n:1160000
C14orf105   1160000 perm   831 sec   (1396 perm/sec)   p_kst 3.196552e-03   p_cons 9.649138e-03   p_joint 6.370690e-04

Joint ci ratio: 1.084522e-01	ci left: 1.054882e-03	ci right 1.176669e-03	k: 1304	n:1170000
Cons ci ratio: 3.673879e-02	ci left: 9.459674e-03	ci right 9.814554e-03	k: 11274	n:1170000
KS ci ratio: 6.391919e-02	ci left: 3.101831e-03	ci right 3.307478e-03	k: 3748	n:1170000
C14orf105   1170000 perm   843 sec   (1387 perm/sec)   p_kst 3.203419e-03   p_cons 9.635897e-03   p_joint 1.114530e-03

Joint ci ratio: 1.076708e-01	ci left: 1.061609e-03	ci right 1.183234e-03	k: 1323	n:1180000
Cons ci ratio: 3.658014e-02	ci left: 9.461797e-03	ci right 9.815192e-03	k: 11372	n:1180000
KS ci ratio: 6.358910e-02	ci left: 3.108069e-03	ci right 3.313026e-03	k: 3787	n:1180000
C14orf105   1180000 perm   856 sec   (1379 perm/sec)   p_kst 3.209322e-03   p_cons 9.637288e-03   p_joint 1.121186e-03

Joint ci ratio: 1.075089e-01	ci left: 1.055959e-03	ci right 1.176743e-03	k: 1327	n:1190000
Cons ci ratio: 3.644277e-02	ci left: 9.453895e-03	ci right 9.805641e-03	k: 11458	n:1190000
KS ci ratio: 6.337215e-02	ci left: 3.103452e-03	ci right 3.307381e-03	k: 3813	n:1190000
C14orf105   1190000 perm   869 sec   (1370 perm/sec)   p_kst 3.204202e-03   p_cons 9.628571e-03   p_joint 1.115126e-03

Joint ci ratio: 1.070664e-01	ci left: 1.056080e-03	ci right 1.176349e-03	k: 1338	n:1200000
Cons ci ratio: 3.627840e-02	ci left: 9.460992e-03	ci right 9.811381e-03	k: 11562	n:1200000
KS ci ratio: 6.309151e-02	ci left: 3.105476e-03	ci right 3.308601e-03	k: 3847	n:1200000
C14orf105   1200000 perm   881 sec   (1362 perm/sec)   p_kst 3.205833e-03   p_cons 9.635000e-03   p_joint 1.115000e-03

Joint ci ratio: 1.065898e-01	ci left: 1.057004e-03	ci right 1.176809e-03	k: 1350	n:1210000
Cons ci ratio: 3.614752e-02	ci left: 9.451594e-03	ci right 9.800346e-03	k: 11646	n:1210000
KS ci ratio: 6.287145e-02	ci left: 3.101773e-03	ci right 3.303922e-03	k: 3874	n:1210000
C14orf105   1210000 perm   894 sec   (1354 perm/sec)   p_kst 3.201653e-03   p_cons 9.624793e-03   p_joint 1.115702e-03

Joint ci ratio: 1.061585e-01	ci left: 1.057117e-03	ci right 1.176419e-03	k: 1361	n:1220000
Cons ci ratio: 3.599637e-02	ci left: 9.453726e-03	ci right 9.801068e-03	k: 11744	n:1220000
KS ci ratio: 6.264563e-02	ci left: 3.098939e-03	ci right 3.300152e-03	k: 3902	n:1220000
C14orf105   1220000 perm   907 sec   (1345 perm/sec)   p_kst 3.198361e-03   p_cons 9.626230e-03   p_joint 1.115574e-03

Joint ci ratio: 1.060810e-01	ci left: 1.050105e-03	ci right 1.168524e-03	k: 1363	n:1230000
Cons ci ratio: 3.584405e-02	ci left: 9.457437e-03	ci right 9.803415e-03	k: 11844	n:1230000
KS ci ratio: 6.243020e-02	ci left: 3.095352e-03	ci right 3.295616e-03	k: 3929	n:1230000
C14orf105   1230000 perm   921 sec   (1335 perm/sec)   p_kst 3.194309e-03   p_cons 9.629268e-03   p_joint 1.108130e-03

Joint ci ratio: 1.057714e-01	ci left: 1.047917e-03	ci right 1.165723e-03	k: 1371	n:1240000
Cons ci ratio: 3.568761e-02	ci left: 9.464289e-03	ci right 9.808975e-03	k: 11948	n:1240000
KS ci ratio: 6.219332e-02	ci left: 3.094206e-03	ci right 3.293609e-03	k: 3959	n:1240000
C14orf105   1240000 perm   935 sec   (1326 perm/sec)   p_kst 3.192742e-03   p_cons 9.635484e-03   p_joint 1.105645e-03

Joint ci ratio: 1.053881e-01	ci left: 1.047322e-03	ci right 1.164609e-03	k: 1381	n:1250000
Cons ci ratio: 3.554660e-02	ci left: 9.463898e-03	ci right 9.807180e-03	k: 12043	n:1250000
KS ci ratio: 6.200590e-02	ci left: 3.088354e-03	ci right 3.286759e-03	k: 3983	n:1250000
C14orf105   1250000 perm   948 sec   (1318 perm/sec)   p_kst 3.186400e-03   p_cons 9.634400e-03   p_joint 1.104800e-03

Joint ci ratio: 1.049712e-01	ci left: 1.047511e-03	ci right 1.164326e-03	k: 1392	n:1260000
Cons ci ratio: 3.541315e-02	ci left: 9.460369e-03	ci right 9.802209e-03	k: 12134	n:1260000
KS ci ratio: 6.170444e-02	ci left: 3.094317e-03	ci right 3.292104e-03	k: 4022	n:1260000
C14orf105   1260000 perm   961 sec   (1311 perm/sec)   p_kst 3.192063e-03   p_cons 9.630159e-03   p_joint 1.104762e-03

Joint ci ratio: 1.046338e-01	ci left: 1.046164e-03	ci right 1.162430e-03	k: 1401	n:1270000
Cons ci ratio: 3.524046e-02	ci left: 9.478752e-03	ci right 9.819553e-03	k: 12253	n:1270000
KS ci ratio: 6.149092e-02	ci left: 3.091660e-03	ci right 3.288569e-03	k: 4050	n:1270000
C14orf105   1270000 perm   975 sec   (1303 perm/sec)   p_kst 3.188976e-03   p_cons 9.648031e-03   p_joint 1.103150e-03

Joint ci ratio: 1.041151e-01	ci left: 1.048642e-03	ci right 1.164571e-03	k: 1415	n:1280000
Cons ci ratio: 3.512909e-02	ci left: 9.465100e-03	ci right 9.804312e-03	k: 12331	n:1280000
KS ci ratio: 6.122692e-02	ci left: 3.094431e-03	ci right 3.290640e-03	k: 4085	n:1280000
C14orf105   1280000 perm   988 sec   (1296 perm/sec)   p_kst 3.191406e-03   p_cons 9.633594e-03   p_joint 1.105469e-03

Joint ci ratio: 1.038224e-01	ci left: 1.046554e-03	ci right 1.161907e-03	k: 1423	n:1290000
Cons ci ratio: 3.498889e-02	ci left: 9.467799e-03	ci right 9.805726e-03	k: 12430	n:1290000
KS ci ratio: 6.094404e-02	ci left: 3.099451e-03	ci right 3.295038e-03	k: 4123	n:1290000
C14orf105   1290000 perm   1001 sec   (1289 perm/sec)   p_kst 3.196124e-03   p_cons 9.635659e-03   p_joint 1.103101e-03

Joint ci ratio: 1.033516e-01	ci left: 1.048244e-03	ci right 1.163228e-03	k: 1436	n:1300000
Cons ci ratio: 3.485176e-02	ci left: 9.469696e-03	ci right 9.806340e-03	k: 12528	n:1300000
KS ci ratio: 6.068699e-02	ci left: 3.102123e-03	ci right 3.297024e-03	k: 4158	n:1300000
C14orf105   1300000 perm   1014 sec   (1282 perm/sec)   p_kst 3.198462e-03   p_cons 9.636923e-03   p_joint 1.104615e-03

Joint ci ratio: 1.028872e-01	ci left: 1.049910e-03	ci right 1.164528e-03	k: 1449	n:1310000
Cons ci ratio: 3.471207e-02	ci left: 9.473837e-03	ci right 9.809252e-03	k: 12629	n:1310000
KS ci ratio: 6.041872e-02	ci left: 3.106259e-03	ci right 3.300528e-03	k: 4195	n:1310000
C14orf105   1310000 perm   1028 sec   (1275 perm/sec)   p_kst 3.202290e-03   p_cons 9.640458e-03   p_joint 1.106107e-03

Joint ci ratio: 1.024641e-01	ci left: 1.050814e-03	ci right 1.165030e-03	k: 1461	n:1320000
Cons ci ratio: 3.459188e-02	ci left: 9.468154e-03	ci right 9.802184e-03	k: 12717	n:1320000
KS ci ratio: 6.021823e-02	ci left: 3.103619e-03	ci right 3.297056e-03	k: 4223	n:1320000
C14orf105   1320000 perm   1041 sec   (1268 perm/sec)   p_kst 3.199242e-03   p_cons 9.634091e-03   p_joint 1.106818e-03

Joint ci ratio: 1.021502e-01	ci left: 1.049507e-03	ci right 1.163210e-03	k: 1470	n:1330000
Cons ci ratio: 3.445121e-02	ci left: 9.474486e-03	ci right 9.807354e-03	k: 12821	n:1330000
KS ci ratio: 6.001264e-02	ci left: 3.101760e-03	ci right 3.294398e-03	k: 4252	n:1330000
C14orf105   1330000 perm   1055 sec   (1261 perm/sec)   p_kst 3.196992e-03   p_cons 9.639850e-03   p_joint 1.105263e-03

Joint ci ratio: 1.016332e-01	ci left: 1.052583e-03	ci right 1.166009e-03	k: 1485	n:1340000
Cons ci ratio: 3.432430e-02	ci left: 9.474067e-03	ci right 9.805669e-03	k: 12916	n:1340000
KS ci ratio: 5.979513e-02	ci left: 3.101401e-03	ci right 3.293294e-03	k: 4283	n:1340000
C14orf105   1340000 perm   1069 sec   (1254 perm/sec)   p_kst 3.196269e-03   p_cons 9.638806e-03   p_joint 1.108209e-03

Joint ci ratio: 1.012930e-01	ci left: 1.052006e-03	ci right 1.164967e-03	k: 1495	n:1350000
Cons ci ratio: 3.420145e-02	ci left: 9.472187e-03	ci right 9.802514e-03	k: 13009	n:1350000
KS ci ratio: 5.958690e-02	ci left: 3.100318e-03	ci right 3.291453e-03	k: 4313	n:1350000
C14orf105   1350000 perm   1083 sec   (1247 perm/sec)   p_kst 3.194815e-03   p_cons 9.636296e-03   p_joint 1.107407e-03

Joint ci ratio: 1.008556e-01	ci left: 1.053588e-03	ci right 1.166201e-03	k: 1508	n:1360000
Cons ci ratio: 3.409567e-02	ci left: 9.461588e-03	ci right 9.790505e-03	k: 13090	n:1360000
KS ci ratio: 5.932606e-02	ci left: 3.105047e-03	ci right 3.295608e-03	k: 4351	n:1360000
C14orf105   1360000 perm   1096 sec   (1241 perm/sec)   p_kst 3.199265e-03   p_cons 9.625000e-03   p_joint 1.108824e-03

Joint ci ratio: 1.005895e-01	ci left: 1.051590e-03	ci right 1.163675e-03	k: 1516	n:1370000
Cons ci ratio: 3.399868e-02	ci left: 9.446803e-03	ci right 9.774253e-03	k: 13165	n:1370000
KS ci ratio: 5.909562e-02	ci left: 3.106833e-03	ci right 3.296737e-03	k: 4385	n:1370000
C14orf105   1370000 perm   1110 sec   (1234 perm/sec)   p_kst 3.200730e-03   p_cons 9.609489e-03   p_joint 1.106569e-03

Joint ci ratio: 1.002268e-01	ci left: 1.051740e-03	ci right 1.163414e-03	k: 1527	n:1380000
Cons ci ratio: 3.388314e-02	ci left: 9.443012e-03	ci right 9.769196e-03	k: 13255	n:1380000
KS ci ratio: 5.885449e-02	ci left: 3.110022e-03	ci right 3.299319e-03	k: 4421	n:1380000
C14orf105   1380000 perm   1124 sec   (1227 perm/sec)   p_kst 3.203623e-03   p_cons 9.605072e-03   p_joint 1.106522e-03

Joint ci ratio: 9.990043e-02	ci left: 1.051188e-03	ci right 1.162418e-03	k: 1537	n:1390000
Cons ci ratio: 3.374453e-02	ci left: 9.452831e-03	ci right 9.777994e-03	k: 13364	n:1390000
KS ci ratio: 5.860970e-02	ci left: 3.113876e-03	ci right 3.302592e-03	k: 4458	n:1390000
C14orf105   1390000 perm   1139 sec   (1221 perm/sec)   p_kst 3.207194e-03   p_cons 9.614388e-03   p_joint 1.105755e-03

Outputting figure to mutsig2_images.part000000000019/C14orf105.2_915_1390000_0.0032072_0.0096144_0.0011058.png
                gene_name: C14orf105
               theta_stop: 0.100 
                    nperm: 1390000 
                     p_ks: 0.0032 
        ci_ks_bounds_left: 0.0031 
       ci_ks_bounds_right: 0.0033 
                   p_cons: 0.0096 
      ci_cons_bounds_left: 0.0095 
     ci_cons_bounds_right: 0.0098 
                  p_joint: 0.0011 
     ci_joint_bounds_left: 0.0011 
    ci_joint_bounds_right: 0.0012 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000019
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 19 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1700>
Subject: Job 9893845: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1700>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000020> was used as the working directory.
Started at Fri Oct  5 23:55:10 2012
Results reported at Sat Oct  6 02:56:04 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000020.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000020.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 20  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000020.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10841.70 sec.
    Max Memory :      3538 MB
    Max Swap   :      6045 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
20
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 20
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 20: processing genes 1714 - 1803
Calculating significance of each gene.
Using projection method.
1714	C14orf118	2.004624e-01
1715	C14orf119	1
1716	C14orf126	4.099622e-02
1717	C14orf129	5.359840e-01
1718	C14orf135	6.828391e-01
1719	C14orf138	1
1720	C14orf142	1
1721	C14orf143	6.379392e-01
1722	C14orf145	7.983839e-01
1723	C14orf147	1
1724	C14orf148	5.296019e-01
1725	C14orf149	1
1726	C14orf153	3.663550e-01
1727	C14orf156	1
1728	C14orf159	7.833449e-01
1729	C14orf166	4.030748e-01
1730	C14orf166B	5.586708e-01
1731	C14orf169	7.814599e-01
1732	C14orf174	1
1733	C14orf177	4.149312e-01
1734	C14orf178	2.956720e-01
1735	C14orf179	7.596975e-01
1736	C14orf180	1
1737	C14orf181	1
1738	C14orf182	3.033103e-02
1739	C14orf183	2.849147e-01
1740	C14orf184	1
1741	C14orf2	1
1742	C14orf21	8.155606e-01
1743	C14orf28	4.875174e-01
1744	C14orf37	6.229533e-01
1745	C14orf39	3.959279e-01
1746	C14orf4	1
1747	C14orf43	6.969939e-01
1748	C14orf45	8.649789e-01
1749	C14orf49	8.834543e-01
1750	C14orf50	1.877662e-02
1751	C14orf68	1
1752	C14orf73	1
1753	C14orf79	1
1754	C14orf93	3.097319e-01
1755	C15orf17	1
1756	C15orf2	1.574346e-03
1757	C15orf23	6.227665e-01
1758	C15orf24	6.602401e-01
1759	C15orf26	4.429628e-01
1760	C15orf27	8.891478e-01
1761	C15orf29	7.475990e-01
1762	C15orf32	5.703381e-01
1763	C15orf33	8.138464e-02
1764	C15orf38	1
1765	C15orf39	9.183616e-01
1766	C15orf40	5.444904e-02
1767	C15orf41	1.549865e-01
1768	C15orf42	8.658777e-01
1769	C15orf43	6.091605e-01
1770	C15orf44	1
1771	C15orf48	3.945256e-01
1772	C15orf52	6.259588e-01
1773	C15orf53	3.464066e-01
1774	C15orf54	1
1775	C15orf55	7.964684e-01
1776	C15orf57	1.171528e-01
1777	C15orf58	6.393034e-01
1778	C15orf59	5.103593e-01
1779	C15orf60	4.598891e-02
1780	C15orf63	1
1781	C16orf11	1
1782	C16orf13	2.777756e-01
1783	C16orf3	3.443610e-01
1784	C16orf42	1
1785	C16orf45	6.554704e-02
1786	C16orf46	5.525031e-01
1787	C16orf48	6.134929e-01
1788	C16orf5	1
1789	C16orf53	1
1790	C16orf55	1
1791	C16orf57	7.263848e-01
1792	C16orf58	2.943844e-01
1793	C16orf59	1
1794	C16orf61	1
1795	C16orf62	9.678294e-01
1796	C16orf63	4.819492e-01
1797	C16orf68	1.853204e-01
1798	C16orf7	1
1799	C16orf70	1
1800	C16orf71	6.075744e-01
1801	C16orf72	1
1802	C16orf73	4.503821e-01
1803	C16orf74	1
Done

Running MutSig 2:
Scatter job 20: processing genes 1714 - 1803
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C15orf2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.932931e-01	ci left: 3.567168e-02	ci right 4.339951e-02	k: 394	n:10000
Cons ci ratio: 1.862176e-02	ci left: 8.081622e-01	ci right 8.234533e-01	k: 8159	n:10000
KS ci ratio: 3.442409e-01	ci left: 1.059811e-02	ci right 1.509234e-02	k: 127	n:10000
C15orf2   10000 perm   2 sec   (4733 perm/sec)   p_kst 1.270000e-02   p_cons 8.159000e-01   p_joint 3.940000e-02

Joint ci ratio: 1.329584e-01	ci left: 3.887454e-02	ci right 4.445971e-02	k: 832	n:20000
Cons ci ratio: 1.306409e-02	ci left: 8.128343e-01	ci right 8.235730e-01	k: 16365	n:20000
KS ci ratio: 2.330359e-01	ci left: 1.232340e-02	ci right 1.562013e-02	k: 278	n:20000
C15orf2   20000 perm   7 sec   (2688 perm/sec)   p_kst 1.390000e-02   p_cons 8.182500e-01   p_joint 4.160000e-02

Joint ci ratio: 1.049118e-01	ci left: 4.212918e-02	ci right 4.682621e-02	k: 1333	n:30000
Cons ci ratio: 1.035641e-02	ci left: 8.225369e-01	ci right 8.311330e-01	k: 24806	n:30000
KS ci ratio: 1.920271e-01	ci left: 1.238345e-02	ci right 1.504528e-02	k: 410	n:30000
C15orf2   30000 perm   10 sec   (3013 perm/sec)   p_kst 1.366667e-02   p_cons 8.268667e-01   p_joint 4.443333e-02

Joint ci ratio: 1.083685e-01	ci left: 2.995595e-02	ci right 3.341248e-02	k: 1266	n:40000
Cons ci ratio: 8.967031e-03	ci left: 8.231814e-01	ci right 8.306211e-01	k: 33077	n:40000
KS ci ratio: 1.693020e-01	ci left: 1.210449e-02	ci right 1.436699e-02	k: 528	n:40000
C15orf2   40000 perm   13 sec   (3192 perm/sec)   p_kst 1.320000e-02   p_cons 8.269250e-01   p_joint 3.165000e-02

Joint ci ratio: 9.142981e-02	ci left: 3.383642e-02	ci right 3.709780e-02	k: 1772	n:50000
Cons ci ratio: 8.253686e-03	ci left: 8.151536e-01	ci right 8.219294e-01	k: 40928	n:50000
KS ci ratio: 1.492980e-01	ci left: 1.258383e-02	ci right 1.463321e-02	k: 679	n:50000
C15orf2   50000 perm   15 sec   (3288 perm/sec)   p_kst 1.358000e-02   p_cons 8.185600e-01   p_joint 3.544000e-02

Joint ci ratio: 9.555458e-02	ci left: 2.597811e-02	ci right 2.860121e-02	k: 1636	n:60000
Cons ci ratio: 7.543240e-03	ci left: 8.151071e-01	ci right 8.212955e-01	k: 49093	n:60000
KS ci ratio: 1.353680e-01	ci left: 1.284956e-02	ci right 1.473123e-02	k: 826	n:60000
C15orf2   60000 perm   18 sec   (3332 perm/sec)   p_kst 1.376667e-02   p_cons 8.182167e-01   p_joint 2.726667e-02

Joint ci ratio: 7.641799e-02	ci left: 3.484242e-02	ci right 3.762477e-02	k: 2535	n:70000
Cons ci ratio: 6.952857e-03	ci left: 8.166593e-01	ci right 8.223714e-01	k: 57367	n:70000
KS ci ratio: 1.258456e-01	ci left: 1.281041e-02	ci right 1.454453e-02	k: 956	n:70000
C15orf2   70000 perm   21 sec   (3350 perm/sec)   p_kst 1.365714e-02   p_cons 8.195286e-01   p_joint 3.621429e-02

Joint ci ratio: 7.111780e-02	ci left: 3.528480e-02	ci right 3.789895e-02	k: 2926	n:80000
Cons ci ratio: 6.492603e-03	ci left: 8.173576e-01	ci right 8.226941e-01	k: 65603	n:80000
KS ci ratio: 1.185288e-01	ci left: 1.268748e-02	ci right 1.429809e-02	k: 1078	n:80000
C15orf2   80000 perm   24 sec   (3355 perm/sec)   p_kst 1.347500e-02   p_cons 8.200375e-01   p_joint 3.657500e-02

Joint ci ratio: 6.861076e-02	ci left: 3.379785e-02	ci right 3.621002e-02	k: 3149	n:90000
Cons ci ratio: 6.121596e-03	ci left: 8.174965e-01	ci right 8.225273e-01	k: 73802	n:90000
KS ci ratio: 1.116511e-01	ci left: 1.275621e-02	ci right 1.427539e-02	k: 1215	n:90000
C15orf2   90000 perm   27 sec   (3349 perm/sec)   p_kst 1.350000e-02   p_cons 8.200222e-01   p_joint 3.498889e-02

Joint ci ratio: 6.938597e-02	ci left: 2.985575e-02	ci right 3.201157e-02	k: 3092	n:100000
Cons ci ratio: 5.801396e-03	ci left: 8.179363e-01	ci right 8.227052e-01	k: 82033	n:100000
KS ci ratio: 1.066080e-01	ci left: 1.262834e-02	ci right 1.406009e-02	k: 1333	n:100000
C15orf2   100000 perm   30 sec   (3342 perm/sec)   p_kst 1.333000e-02   p_cons 8.203300e-01   p_joint 3.092000e-02

Joint ci ratio: 6.589063e-02	ci left: 3.014463e-02	ci right 3.220746e-02	k: 3428	n:110000
Cons ci ratio: 5.384874e-03	ci left: 8.258663e-01	ci right 8.303345e-01	k: 91092	n:110000
KS ci ratio: 1.018016e-01	ci left: 1.262248e-02	ci right 1.398518e-02	k: 1462	n:110000
C15orf2   110000 perm   33 sec   (3332 perm/sec)   p_kst 1.329091e-02   p_cons 8.281091e-01   p_joint 3.116364e-02

Joint ci ratio: 6.266079e-02	ci left: 3.059279e-02	ci right 3.257993e-02	k: 3789	n:120000
Cons ci ratio: 5.153221e-03	ci left: 8.260956e-01	ci right 8.303719e-01	k: 99389	n:120000
KS ci ratio: 9.719028e-02	ci left: 1.272453e-02	ci right 1.403248e-02	k: 1604	n:120000
C15orf2   120000 perm   36 sec   (3313 perm/sec)   p_kst 1.336667e-02   p_cons 8.282417e-01   p_joint 3.157500e-02

Outputting figure to mutsig2_images.part000000000020/C15orf2.15_3475_120000_0.013367_0.82824_0.031575.png
                gene_name: C15orf2
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 3 percent done.
C15orf42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.197341e-02	ci left: 3.530692e-01	ci right 3.720109e-01	k: 3625	n:10000
Cons ci ratio: 4.315524e-02	ci left: 4.422106e-01	ci right 4.618174e-01	k: 4520	n:10000
KS ci ratio: 8.958253e-02	ci left: 1.534534e-01	ci right 1.679449e-01	k: 1606	n:10000
C15orf42   10000 perm   2 sec   (4273 perm/sec)   p_kst 1.606000e-01   p_cons 4.520000e-01   p_joint 3.625000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf42.9_5821_10000_0.1606_0.452_0.3625.png
                gene_name: C15orf42
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 5 percent done.
C15orf33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.584973e-02	ci left: 4.124934e-01	ci right 4.319520e-01	k: 4222	n:10000
Cons ci ratio: 1.560120e-02	ci left: 8.564111e-01	ci right 8.699766e-01	k: 8633	n:10000
KS ci ratio: 5.698598e-02	ci left: 3.119521e-01	ci right 3.303522e-01	k: 3211	n:10000
C15orf33   10000 perm   2 sec   (5740 perm/sec)   p_kst 3.211000e-01   p_cons 8.633000e-01   p_joint 4.222000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf33.6_1587_10000_0.3211_0.8633_0.4222.png
                gene_name: C15orf33
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 8 percent done.
C14orf145
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.196689e-02	ci left: 2.204982e-01	ci right 2.370601e-01	k: 2287	n:10000
Cons ci ratio: 5.232375e-02	ci left: 3.499877e-01	ci right 3.688943e-01	k: 3594	n:10000
KS ci ratio: 9.393873e-02	ci left: 1.412895e-01	ci right 1.553161e-01	k: 1482	n:10000
C14orf145   10000 perm   2 sec   (5107 perm/sec)   p_kst 1.482000e-01   p_cons 3.594000e-01   p_joint 2.287000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf145.5_3377_10000_0.1482_0.3594_0.2287.png
                gene_name: C14orf145
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 11 percent done.
C14orf39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.792416e-02	ci left: 8.195432e-01	ci right 8.344658e-01	k: 8271	n:10000
Cons ci ratio: 5.396524e-02	ci left: 3.359772e-01	ci right 3.547130e-01	k: 3453	n:10000
KS ci ratio: 1.272679e-02	ci left: 8.987765e-01	ci right 9.103866e-01	k: 9047	n:10000
C14orf39   10000 perm   2 sec   (5652 perm/sec)   p_kst 9.047000e-01   p_cons 3.453000e-01   p_joint 8.271000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf39.5_1832_10000_0.9047_0.3453_0.8271.png
                gene_name: C14orf39
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 13 percent done.
C14orf118
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.267779e-02	ci left: 3.469066e-01	ci right 3.657772e-01	k: 3563	n:10000
Cons ci ratio: 4.795085e-02	ci left: 3.908763e-01	ci right 4.101817e-01	k: 4005	n:10000
KS ci ratio: 7.539331e-02	ci left: 2.047140e-01	ci right 2.208536e-01	k: 2127	n:10000
C14orf118   10000 perm   2 sec   (5736 perm/sec)   p_kst 2.127000e-01   p_cons 4.005000e-01   p_joint 3.563000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf118.4_1529_10000_0.2127_0.4005_0.3563.png
                gene_name: C14orf118
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 16 percent done.
C14orf37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.207405e-02	ci left: 4.547863e-01	ci right 4.744343e-01	k: 4646	n:10000
Cons ci ratio: 7.318717e-03	ci left: 9.626796e-01	ci right 9.698454e-01	k: 9664	n:10000
KS ci ratio: 8.525785e-02	ci left: 1.670085e-01	ci right 1.819816e-01	k: 1744	n:10000
C14orf37   10000 perm   2 sec   (5821 perm/sec)   p_kst 1.744000e-01   p_cons 9.664000e-01   p_joint 4.646000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf37.4_2353_10000_0.1744_0.9664_0.4646.png
                gene_name: C14orf37
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 18 percent done.
C14orf43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.432366e-02	ci left: 4.290429e-01	ci right 4.485928e-01	k: 4388	n:10000
Cons ci ratio: 8.043957e-02	ci left: 1.841239e-01	ci right 1.996560e-01	k: 1918	n:10000
KS ci ratio: 2.911097e-02	ci left: 6.350273e-01	ci right 6.538884e-01	k: 6445	n:10000
C14orf43   10000 perm   2 sec   (4918 perm/sec)   p_kst 6.445000e-01   p_cons 1.918000e-01   p_joint 4.388000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf43.4_3182_10000_0.6445_0.1918_0.4388.png
                gene_name: C14orf43
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 21 percent done.
C14orf49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.673845e-02	ci left: 2.478638e-01	ci right 2.650783e-01	k: 2564	n:10000
Cons ci ratio: 6.675939e-03	ci left: 9.684703e-01	ci right 9.750510e-01	k: 9719	n:10000
KS ci ratio: 1.075815e-01	ci left: 1.108601e-01	ci right 1.235638e-01	k: 1171	n:10000
C14orf49   10000 perm   2 sec   (5550 perm/sec)   p_kst 1.171000e-01   p_cons 9.719000e-01   p_joint 2.564000e-01

Joint ci ratio: 4.287597e-02	ci left: 2.883868e-01	ci right 3.010730e-01	k: 5894	n:20000
Cons ci ratio: 4.802411e-03	ci left: 9.684759e-01	ci right 9.731859e-01	k: 19418	n:20000
KS ci ratio: 7.448022e-02	ci left: 1.171008e-01	ci right 1.262095e-01	k: 2432	n:20000
C14orf49   20000 perm   4 sec   (4888 perm/sec)   p_kst 1.216000e-01   p_cons 9.709000e-01   p_joint 2.947000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf49.4_2996_20000_0.1216_0.9709_0.2947.png
                gene_name: C14orf49
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 24 percent done.
C14orf50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.628204e-02	ci left: 2.008694e-01	ci right 2.169006e-01	k: 2088	n:10000
Cons ci ratio: 8.773547e-02	ci left: 1.590500e-01	ci right 1.737448e-01	k: 1663	n:10000
KS ci ratio: 8.798932e-02	ci left: 1.582644e-01	ci right 1.729310e-01	k: 1655	n:10000
C14orf50   10000 perm   2 sec   (5786 perm/sec)   p_kst 1.655000e-01   p_cons 1.663000e-01   p_joint 2.088000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf50.4_1317_10000_0.1655_0.1663_0.2088.png
                gene_name: C14orf50
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 26 percent done.
C15orf55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.555495e-02	ci left: 1.660256e-01	ci right 1.809651e-01	k: 1734	n:10000
Cons ci ratio: 1.559827e-01	ci left: 5.474973e-02	ci right 6.410897e-02	k: 593	n:10000
KS ci ratio: 3.818818e-02	ci left: 5.031509e-01	ci right 5.228415e-01	k: 5130	n:10000
C15orf55   10000 perm   2 sec   (5421 perm/sec)   p_kst 5.130000e-01   p_cons 5.930000e-02   p_joint 1.734000e-01

Joint ci ratio: 5.878302e-02	ci left: 1.765258e-01	ci right 1.872668e-01	k: 3637	n:20000
Cons ci ratio: 1.110461e-01	ci left: 5.538421e-02	ci right 6.194483e-02	k: 1172	n:20000
KS ci ratio: 2.713507e-02	ci left: 5.036459e-01	ci right 5.175510e-01	k: 10212	n:20000
C15orf55   20000 perm   4 sec   (4708 perm/sec)   p_kst 5.106000e-01   p_cons 5.860000e-02   p_joint 1.818500e-01

Joint ci ratio: 6.220393e-02	ci left: 1.132519e-01	ci right 1.205558e-01	k: 3506	n:30000
Cons ci ratio: 9.120750e-02	ci left: 5.534861e-02	ci right 6.067072e-02	k: 1739	n:30000
KS ci ratio: 2.235807e-02	ci left: 5.003921e-01	ci right 5.117400e-01	k: 15182	n:30000
C15orf55   30000 perm   7 sec   (4545 perm/sec)   p_kst 5.060667e-01   p_cons 5.796667e-02   p_joint 1.168667e-01

Outputting figure to mutsig2_images.part000000000020/C15orf55.4_3427_30000_0.50607_0.057967_0.11687.png
                gene_name: C15orf55
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 29 percent done.
C15orf60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.477164e-02	ci left: 8.690740e-01	ci right 8.821063e-01	k: 8757	n:10000
Cons ci ratio: 2.903480e-02	ci left: 6.362341e-01	ci right 6.550810e-01	k: 6457	n:10000
KS ci ratio: 2.391782e-02	ci left: 7.198696e-01	ci right 7.373970e-01	k: 7287	n:10000
C15orf60   10000 perm   2 sec   (6228 perm/sec)   p_kst 7.287000e-01   p_cons 6.457000e-01   p_joint 8.757000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf60.4_825_10000_0.7287_0.6457_0.8757.png
                gene_name: C15orf60
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 32 percent done.
C16orf68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.192926e-02	ci left: 9.096710e-01	ci right 9.206857e-01	k: 9153	n:10000
KS ci ratio: 1.538916e-02	ci left: 8.596771e-01	ci right 8.731087e-01	k: 8665	n:10000
C16orf68   10000 perm   2 sec   (6042 perm/sec)   p_kst 8.665000e-01   p_cons 9.153000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000020/C16orf68.4_1255_10000_0.8665_0.9153_1.png
                gene_name: C16orf68
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
C14orf126
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.213439e-02	ci left: 2.757699e-01	ci right 2.935557e-01	k: 2846	n:10000
Cons ci ratio: 7.961909e-02	ci left: 1.872743e-01	ci right 2.029038e-01	k: 1950	n:10000
KS ci ratio: 8.056948e-02	ci left: 1.836317e-01	ci right 1.991485e-01	k: 1913	n:10000
C14orf126   10000 perm   1 sec   (6670 perm/sec)   p_kst 1.913000e-01   p_cons 1.950000e-01   p_joint 2.846000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf126.3_519_10000_0.1913_0.195_0.2846.png
                gene_name: C14orf126
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 37 percent done.
C14orf135
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.029653e-02	ci left: 6.164309e-01	ci right 6.354957e-01	k: 6260	n:10000
Cons ci ratio: 6.306242e-02	ci left: 2.698288e-01	ci right 2.875003e-01	k: 2786	n:10000
KS ci ratio: 2.654387e-02	ci left: 6.763973e-01	ci right 6.946945e-01	k: 6856	n:10000
C14orf135   10000 perm   2 sec   (5460 perm/sec)   p_kst 6.856000e-01   p_cons 2.786000e-01   p_joint 6.260000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf135.3_2853_10000_0.6856_0.2786_0.626.png
                gene_name: C14orf135
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 39 percent done.
C14orf159
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.379671e-02	ci left: 4.349276e-01	ci right 4.545046e-01	k: 4447	n:10000
Cons ci ratio: 1.754394e-03	ci left: 9.970345e-01	ci right 9.988557e-01	k: 9981	n:10000
KS ci ratio: 6.760682e-02	ci left: 2.430195e-01	ci right 2.601254e-01	k: 2515	n:10000
C14orf159   10000 perm   2 sec   (6467 perm/sec)   p_kst 2.515000e-01   p_cons 9.981000e-01   p_joint 4.447000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf159.3_1914_10000_0.2515_0.9981_0.4447.png
                gene_name: C14orf159
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 42 percent done.
C14orf166B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.553540e-02	ci left: 2.547867e-01	ci right 2.721513e-01	k: 2634	n:10000
KS ci ratio: 2.524631e-02	ci left: 6.977684e-01	ci right 7.157111e-01	k: 7068	n:10000
C14orf166B   10000 perm   2 sec   (6298 perm/sec)   p_kst 7.068000e-01   p_cons 2.634000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000020/C14orf166B.3_1523_10000_0.7068_0.2634_1.png
                gene_name: C14orf166B
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
C14orf93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.179607e-02	ci left: 4.580809e-01	ci right 4.777378e-01	k: 4679	n:10000
Cons ci ratio: 3.270107e-02	ci left: 5.798839e-01	ci right 5.992639e-01	k: 5896	n:10000
KS ci ratio: 6.573861e-02	ci left: 2.535997e-01	ci right 2.709390e-01	k: 2622	n:10000
C14orf93   10000 perm   2 sec   (6067 perm/sec)   p_kst 2.622000e-01   p_cons 5.896000e-01   p_joint 4.679000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf93.3_1641_10000_0.2622_0.5896_0.4679.png
                gene_name: C14orf93
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 47 percent done.
C15orf39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.076292e-02	ci left: 1.500184e-01	ci right 1.643819e-01	k: 1571	n:10000
Cons ci ratio: 6.138026e-02	ci left: 2.807224e-01	ci right 2.986003e-01	k: 2896	n:10000
KS ci ratio: 1.198041e-01	ci left: 9.087811e-02	ci right 1.025580e-01	k: 966	n:10000
C15orf39   10000 perm   2 sec   (5532 perm/sec)   p_kst 9.660000e-02   p_cons 2.896000e-01   p_joint 1.571000e-01

Joint ci ratio: 7.601789e-02	ci left: 1.128713e-01	ci right 1.218402e-01	k: 2346	n:20000
Cons ci ratio: 4.341842e-02	ci left: 2.832205e-01	ci right 2.958408e-01	k: 5790	n:20000
KS ci ratio: 8.350250e-02	ci left: 9.509059e-02	ci right 1.034263e-01	k: 1984	n:20000
C15orf39   20000 perm   4 sec   (4972 perm/sec)   p_kst 9.920000e-02   p_cons 2.895000e-01   p_joint 1.173000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf39.3_3152_20000_0.0992_0.2895_0.1173.png
                gene_name: C15orf39
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 50 percent done.
C16orf45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
Cons ci ratio: 4.733738e-02	ci left: 3.970506e-01	ci right 4.164037e-01	k: 4067	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
C16orf45   10000 perm   1 sec   (7112 perm/sec)   p_kst 1.000000e-04   p_cons 4.067000e-01   p_joint 1.340000e-02

Joint ci ratio: 4.892032e-01	ci left: 2.421370e-03	ci right 4.028444e-03	k: 63	n:20000
Cons ci ratio: 3.398741e-02	ci left: 3.926022e-01	ci right 4.062270e-01	k: 7988	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
C16orf45   20000 perm   3 sec   (6223 perm/sec)   p_kst 5.000000e-05   p_cons 3.994000e-01   p_joint 3.150000e-03

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.809181e-02	ci left: 3.880323e-01	ci right 3.991217e-01	k: 11807	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
C16orf45   30000 perm   5 sec   (5805 perm/sec)   p_kst 3.333333e-05   p_cons 3.935667e-01   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.427603e-02	ci left: 3.898055e-01	ci right 3.994098e-01	k: 15784	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
C16orf45   40000 perm   7 sec   (5629 perm/sec)   p_kst 2.500000e-05   p_cons 3.946000e-01   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.172881e-02	ci left: 3.899728e-01	ci right 3.985595e-01	k: 19713	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
C16orf45   50000 perm   9 sec   (5479 perm/sec)   p_kst 2.000000e-05   p_cons 3.942600e-01   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 1.932644e-02	ci left: 4.028157e-01	ci right 4.106933e-01	k: 24405	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
C16orf45   60000 perm   11 sec   (5348 perm/sec)   p_kst 1.666667e-05   p_cons 4.067500e-01   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 1.790375e-02	ci left: 4.028154e-01	ci right 4.101067e-01	k: 28452	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
C16orf45   70000 perm   13 sec   (5231 perm/sec)   p_kst 1.428571e-05   p_cons 4.064571e-01   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 1.678510e-02	ci left: 4.019701e-01	ci right 4.087868e-01	k: 32430	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
C16orf45   80000 perm   16 sec   (5129 perm/sec)   p_kst 1.250000e-05   p_cons 4.053750e-01   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 1.579632e-02	ci left: 4.030444e-01	ci right 4.094728e-01	k: 36563	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
C16orf45   90000 perm   18 sec   (5025 perm/sec)   p_kst 1.111111e-05   p_cons 4.062556e-01   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 1.538517e-02	ci left: 3.906001e-01	ci right 3.966661e-01	k: 39363	n:100000
KS ci ratio: 2.263168e+00	ci left: 2.422102e-06	ci right 7.224499e-05	k: 2	n:100000
C16orf45   100000 perm   20 sec   (4930 perm/sec)   p_kst 2.000000e-05   p_cons 3.936300e-01   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 1.467349e-02	ci left: 3.906023e-01	ci right 3.963852e-01	k: 43284	n:110000
KS ci ratio: 1.959955e+00	ci left: 5.624327e-06	ci right 7.970039e-05	k: 3	n:110000
C16orf45   110000 perm   23 sec   (4841 perm/sec)   p_kst 2.727273e-05   p_cons 3.934909e-01   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 1.405395e-02	ci left: 3.905513e-01	ci right 3.960872e-01	k: 47198	n:120000
KS ci ratio: 1.959959e+00	ci left: 5.155631e-06	ci right 7.305885e-05	k: 3	n:120000
C16orf45   120000 perm   25 sec   (4750 perm/sec)   p_kst 2.500000e-05   p_cons 3.933167e-01   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 1.350548e-02	ci left: 3.905587e-01	ci right 3.958769e-01	k: 51118	n:130000
KS ci ratio: 1.753037e+00	ci left: 8.383641e-06	ci right 7.877956e-05	k: 4	n:130000
C16orf45   130000 perm   28 sec   (4663 perm/sec)   p_kst 3.076923e-05   p_cons 3.932154e-01   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 1.300763e-02	ci left: 3.908968e-01	ci right 3.960219e-01	k: 55084	n:140000
KS ci ratio: 1.753040e+00	ci left: 7.784806e-06	ci right 7.315257e-05	k: 4	n:140000
C16orf45   140000 perm   31 sec   (4581 perm/sec)   p_kst 2.857143e-05   p_cons 3.934571e-01   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 1.257370e-02	ci left: 3.907135e-01	ci right 3.956639e-01	k: 58978	n:150000
KS ci ratio: 1.600296e+00	ci left: 1.082333e-05	ci right 7.778715e-05	k: 5	n:150000
C16orf45   150000 perm   33 sec   (4502 perm/sec)   p_kst 3.333333e-05   p_cons 3.931867e-01   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 1.217410e-02	ci left: 3.908054e-01	ci right 3.955985e-01	k: 62912	n:160000
KS ci ratio: 1.481584e+00	ci left: 1.376196e-05	ci right 8.161991e-05	k: 6	n:160000
C16orf45   160000 perm   36 sec   (4424 perm/sec)   p_kst 3.750000e-05   p_cons 3.932000e-01   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 1.180276e-02	ci left: 3.911943e-01	ci right 3.958447e-01	k: 66898	n:170000
KS ci ratio: 1.481586e+00	ci left: 1.295243e-05	ci right 7.681884e-05	k: 6	n:170000
C16orf45   170000 perm   39 sec   (4350 perm/sec)   p_kst 3.529412e-05   p_cons 3.935176e-01   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 1.146638e-02	ci left: 3.914197e-01	ci right 3.959393e-01	k: 70862	n:180000
KS ci ratio: 1.385895e+00	ci left: 1.563549e-05	ci right 8.012432e-05	k: 7	n:180000
C16orf45   180000 perm   42 sec   (4279 perm/sec)   p_kst 3.888889e-05   p_cons 3.936778e-01   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 1.116004e-02	ci left: 3.915022e-01	ci right 3.959011e-01	k: 74803	n:190000
KS ci ratio: 1.385896e+00	ci left: 1.481256e-05	ci right 7.590733e-05	k: 7	n:190000
C16orf45   190000 perm   45 sec   (4210 perm/sec)   p_kst 3.684211e-05   p_cons 3.937000e-01   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 1.087884e-02	ci left: 3.914979e-01	ci right 3.957852e-01	k: 78728	n:200000
KS ci ratio: 1.385898e+00	ci left: 1.407193e-05	ci right 7.211204e-05	k: 7	n:200000
C16orf45   200000 perm   48 sec   (4142 perm/sec)   p_kst 3.500000e-05   p_cons 3.936400e-01   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 1.060084e-02	ci left: 3.922613e-01	ci right 3.964464e-01	k: 82814	n:210000
KS ci ratio: 1.385900e+00	ci left: 1.340183e-05	ci right 6.867819e-05	k: 7	n:210000
C16orf45   210000 perm   52 sec   (4059 perm/sec)   p_kst 3.333333e-05   p_cons 3.943524e-01   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 1.036367e-02	ci left: 3.920073e-01	ci right 3.960955e-01	k: 86691	n:220000
KS ci ratio: 1.385901e+00	ci left: 1.279265e-05	ci right 6.555651e-05	k: 7	n:220000
C16orf45   220000 perm   55 sec   (3998 perm/sec)   p_kst 3.181818e-05   p_cons 3.940500e-01   p_joint 0

Joint ci ratio: 6.197512e-01	ci left: 1.205801e-04	ci right 2.317940e-04	k: 39	n:230000
Cons ci ratio: 1.013435e-02	ci left: 3.921238e-01	ci right 3.961223e-01	k: 90648	n:230000
KS ci ratio: 1.306638e+00	ci left: 1.501678e-05	ci right 6.853445e-05	k: 8	n:230000
C16orf45   230000 perm   58 sec   (3940 perm/sec)   p_kst 3.478261e-05   p_cons 3.941217e-01   p_joint 1.695652e-04

Joint ci ratio: 5.977396e-01	ci left: 1.261274e-04	ci right 2.365419e-04	k: 42	n:240000
Cons ci ratio: 9.923766e-03	ci left: 3.920318e-01	ci right 3.959458e-01	k: 94557	n:240000
KS ci ratio: 1.306639e+00	ci left: 1.439107e-05	ci right 6.567889e-05	k: 8	n:240000
C16orf45   240000 perm   62 sec   (3883 perm/sec)   p_kst 3.333333e-05   p_cons 3.939875e-01   p_joint 1.750000e-04

Joint ci ratio: 5.779181e-01	ci left: 1.312962e-04	ci right 2.408468e-04	k: 45	n:250000
Cons ci ratio: 9.716176e-03	ci left: 3.924195e-01	ci right 3.962549e-01	k: 98584	n:250000
KS ci ratio: 1.306641e+00	ci left: 1.381543e-05	ci right 6.305178e-05	k: 8	n:250000
C16orf45   250000 perm   65 sec   (3826 perm/sec)   p_kst 3.200000e-05   p_cons 3.943360e-01   p_joint 1.800000e-04

Joint ci ratio: 5.843074e-01	ci left: 1.229659e-04	ci right 2.271778e-04	k: 44	n:260000
Cons ci ratio: 9.523383e-03	ci left: 3.926629e-01	ci right 3.964241e-01	k: 102581	n:260000
KS ci ratio: 1.306642e+00	ci left: 1.328406e-05	ci right 6.062675e-05	k: 8	n:260000
C16orf45   260000 perm   69 sec   (3772 perm/sec)   p_kst 3.076923e-05   p_cons 3.945423e-01   p_joint 1.692308e-04

Joint ci ratio: 6.443987e-01	ci left: 9.338672e-05	ci right 1.845848e-04	k: 36	n:270000
Cons ci ratio: 9.344162e-03	ci left: 3.927594e-01	ci right 3.964503e-01	k: 106543	n:270000
KS ci ratio: 1.306642e+00	ci left: 1.279206e-05	ci right 5.838134e-05	k: 8	n:270000
C16orf45   270000 perm   73 sec   (3718 perm/sec)   p_kst 2.962963e-05   p_cons 3.946037e-01   p_joint 1.333333e-04

Joint ci ratio: 6.197610e-01	ci left: 9.904757e-05	ci right 1.904033e-04	k: 39	n:280000
Cons ci ratio: 9.178328e-03	ci left: 3.926605e-01	ci right 3.962846e-01	k: 110452	n:280000
KS ci ratio: 1.306643e+00	ci left: 1.233519e-05	ci right 5.629632e-05	k: 8	n:280000
C16orf45   280000 perm   76 sec   (3665 perm/sec)   p_kst 2.857143e-05   p_cons 3.944714e-01   p_joint 1.392857e-04

Joint ci ratio: 6.358652e-01	ci left: 8.983400e-05	ci right 1.758565e-04	k: 37	n:290000
Cons ci ratio: 9.561875e-03	ci left: 3.651489e-01	ci right 3.686606e-01	k: 106402	n:290000
KS ci ratio: 1.306644e+00	ci left: 1.190984e-05	ci right 5.435510e-05	k: 8	n:290000
C16orf45   290000 perm   80 sec   (3615 perm/sec)   p_kst 2.758621e-05   p_cons 3.669034e-01   p_joint 1.275862e-04

Joint ci ratio: 6.197641e-01	ci left: 9.244429e-05	ci right 1.777100e-04	k: 39	n:300000
Cons ci ratio: 9.397657e-03	ci left: 3.653515e-01	ci right 3.688044e-01	k: 110123	n:300000
KS ci ratio: 1.306645e+00	ci left: 1.151284e-05	ci right 5.254328e-05	k: 8	n:300000
C16orf45   300000 perm   84 sec   (3566 perm/sec)   p_kst 2.666667e-05   p_cons 3.670767e-01   p_joint 1.300000e-04

Joint ci ratio: 6.197654e-01	ci left: 8.946217e-05	ci right 1.719776e-04	k: 39	n:310000
Cons ci ratio: 9.244249e-03	ci left: 3.654093e-01	ci right 3.688061e-01	k: 113803	n:310000
KS ci ratio: 1.239591e+00	ci left: 1.327548e-05	ci right 5.511155e-05	k: 9	n:310000
C16orf45   310000 perm   88 sec   (3519 perm/sec)   p_kst 2.903226e-05   p_cons 3.671065e-01   p_joint 1.258065e-04

Joint ci ratio: 6.197667e-01	ci left: 8.666643e-05	ci right 1.666034e-04	k: 39	n:320000
Cons ci ratio: 9.100075e-03	ci left: 3.653640e-01	ci right 3.687071e-01	k: 117451	n:320000
KS ci ratio: 1.239592e+00	ci left: 1.286062e-05	ci right 5.338934e-05	k: 9	n:320000
C16orf45   320000 perm   92 sec   (3473 perm/sec)   p_kst 2.812500e-05   p_cons 3.670344e-01   p_joint 1.218750e-04

Joint ci ratio: 6.197679e-01	ci left: 8.404013e-05	ci right 1.615549e-04	k: 39	n:330000
Cons ci ratio: 8.959228e-03	ci left: 3.654884e-01	ci right 3.687806e-01	k: 121154	n:330000
KS ci ratio: 1.239592e+00	ci left: 1.247090e-05	ci right 5.177150e-05	k: 9	n:330000
C16orf45   330000 perm   96 sec   (3428 perm/sec)   p_kst 2.727273e-05   p_cons 3.671333e-01   p_joint 1.181818e-04

Joint ci ratio: 6.121633e-01	ci left: 8.405007e-05	ci right 1.601985e-04	k: 40	n:340000
Cons ci ratio: 8.827349e-03	ci left: 3.654677e-01	ci right 3.687110e-01	k: 124810	n:340000
KS ci ratio: 1.239593e+00	ci left: 1.210411e-05	ci right 5.024882e-05	k: 9	n:340000
C16orf45   340000 perm   100 sec   (3385 perm/sec)   p_kst 2.647059e-05   p_cons 3.670882e-01   p_joint 1.176471e-04

Joint ci ratio: 6.121644e-01	ci left: 8.164861e-05	ci right 1.556215e-04	k: 40	n:350000
Cons ci ratio: 8.697224e-03	ci left: 3.656569e-01	ci right 3.688538e-01	k: 128539	n:350000
KS ci ratio: 1.239593e+00	ci left: 1.175827e-05	ci right 4.881316e-05	k: 9	n:350000
C16orf45   350000 perm   105 sec   (3345 perm/sec)   p_kst 2.571429e-05   p_cons 3.672543e-01   p_joint 1.142857e-04

Joint ci ratio: 6.722418e-01	ci left: 6.309993e-05	ci right 1.287317e-04	k: 33	n:360000
Cons ci ratio: 7.859665e-03	ci left: 4.070158e-01	ci right 4.102301e-01	k: 147104	n:360000
KS ci ratio: 1.239594e+00	ci left: 1.143165e-05	ci right 4.745725e-05	k: 9	n:360000
C16orf45   360000 perm   109 sec   (3304 perm/sec)   p_kst 2.500000e-05   p_cons 4.086222e-01   p_joint 9.166667e-05

Joint ci ratio: 6.722427e-01	ci left: 6.139450e-05	ci right 1.252525e-04	k: 33	n:370000
Cons ci ratio: 7.755686e-03	ci left: 4.068534e-01	ci right 4.100237e-01	k: 151122	n:370000
KS ci ratio: 1.239594e+00	ci left: 1.112269e-05	ci right 4.617464e-05	k: 9	n:370000
C16orf45   370000 perm   113 sec   (3264 perm/sec)   p_kst 2.432432e-05   p_cons 4.084378e-01   p_joint 8.918919e-05

Joint ci ratio: 6.722435e-01	ci left: 5.977884e-05	ci right 1.219565e-04	k: 33	n:380000
Cons ci ratio: 7.655475e-03	ci left: 4.067156e-01	ci right 4.098437e-01	k: 155146	n:380000
KS ci ratio: 1.239595e+00	ci left: 1.082998e-05	ci right 4.495953e-05	k: 9	n:380000
C16orf45   380000 perm   118 sec   (3227 perm/sec)   p_kst 2.368421e-05   p_cons 4.082789e-01   p_joint 8.684211e-05

Joint ci ratio: 6.625704e-01	ci left: 6.037506e-05	ci right 1.218225e-04	k: 34	n:390000
Cons ci ratio: 7.557926e-03	ci left: 4.066569e-01	ci right 4.097445e-01	k: 159198	n:390000
KS ci ratio: 1.239595e+00	ci left: 1.055229e-05	ci right 4.380673e-05	k: 9	n:390000
C16orf45   390000 perm   122 sec   (3189 perm/sec)   p_kst 2.307692e-05   p_cons 4.082000e-01   p_joint 8.717949e-05

Joint ci ratio: 3.505602e-01	ci left: 2.578484e-04	ci right 3.695998e-04	k: 124	n:400000
Cons ci ratio: 7.461928e-03	ci left: 4.067362e-01	ci right 4.097851e-01	k: 163304	n:400000
KS ci ratio: 1.181907e+00	ci left: 1.198853e-05	ci right 4.597541e-05	k: 10	n:400000
C16orf45   400000 perm   127 sec   (3151 perm/sec)   p_kst 2.500000e-05   p_cons 4.082600e-01   p_joint 3.100000e-04

Joint ci ratio: 3.477895e-01	ci left: 2.560096e-04	ci right 3.658894e-04	k: 126	n:410000
Cons ci ratio: 7.374336e-03	ci left: 4.064951e-01	ci right 4.095062e-01	k: 167280	n:410000
KS ci ratio: 1.181907e+00	ci left: 1.169613e-05	ci right 4.485407e-05	k: 10	n:410000
C16orf45   410000 perm   132 sec   (3115 perm/sec)   p_kst 2.439024e-05   p_cons 4.080000e-01   p_joint 3.073171e-04

Joint ci ratio: 3.687125e-01	ci left: 2.195774e-04	ci right 3.208606e-04	k: 112	n:420000
Cons ci ratio: 7.286090e-03	ci left: 4.065084e-01	ci right 4.094834e-01	k: 171358	n:420000
KS ci ratio: 1.181908e+00	ci left: 1.141765e-05	ci right 4.378612e-05	k: 10	n:420000
C16orf45   420000 perm   136 sec   (3078 perm/sec)   p_kst 2.380952e-05   p_cons 4.079952e-01   p_joint 2.666667e-04

Joint ci ratio: 3.639133e-01	ci left: 2.208056e-04	ci right 3.210148e-04	k: 115	n:430000
Cons ci ratio: 7.199725e-03	ci left: 4.066026e-01	ci right 4.095429e-01	k: 175471	n:430000
KS ci ratio: 1.181908e+00	ci left: 1.115212e-05	ci right 4.276785e-05	k: 10	n:430000
C16orf45   430000 perm   141 sec   (3042 perm/sec)   p_kst 2.325581e-05   p_cons 4.080721e-01   p_joint 2.674419e-04

Joint ci ratio: 3.608164e-01	ci left: 2.199189e-04	ci right 3.186767e-04	k: 117	n:440000
Cons ci ratio: 7.118101e-03	ci left: 4.065746e-01	ci right 4.094812e-01	k: 179532	n:440000
KS ci ratio: 1.181908e+00	ci left: 1.089866e-05	ci right 4.179587e-05	k: 10	n:440000
C16orf45   440000 perm   146 sec   (3009 perm/sec)   p_kst 2.272727e-05   p_cons 4.080273e-01   p_joint 2.659091e-04

Joint ci ratio: 3.577973e-01	ci left: 2.190750e-04	ci right 3.164390e-04	k: 119	n:450000
Cons ci ratio: 7.039256e-03	ci left: 4.065436e-01	ci right 4.094176e-01	k: 183591	n:450000
KS ci ratio: 1.181909e+00	ci left: 1.065647e-05	ci right 4.086708e-05	k: 10	n:450000
C16orf45   450000 perm   151 sec   (2972 perm/sec)   p_kst 2.222222e-05   p_cons 4.079800e-01   p_joint 2.644444e-04

Joint ci ratio: 3.563164e-01	ci left: 2.162914e-04	ci right 3.119281e-04	k: 120	n:460000
Cons ci ratio: 6.961094e-03	ci left: 4.066444e-01	ci right 4.094871e-01	k: 187710	n:460000
KS ci ratio: 1.181909e+00	ci left: 1.042481e-05	ci right 3.997867e-05	k: 10	n:460000
C16orf45   460000 perm   156 sec   (2939 perm/sec)   p_kst 2.173913e-05   p_cons 4.080652e-01   p_joint 2.608696e-04

Joint ci ratio: 3.505685e-01	ci left: 2.194446e-04	ci right 3.145544e-04	k: 124	n:470000
Cons ci ratio: 6.886420e-03	ci left: 4.066753e-01	ci right 4.094876e-01	k: 191798	n:470000
KS ci ratio: 1.181909e+00	ci left: 1.020300e-05	ci right 3.912807e-05	k: 10	n:470000
C16orf45   470000 perm   162 sec   (2906 perm/sec)   p_kst 2.127660e-05   p_cons 4.080809e-01   p_joint 2.638298e-04

Joint ci ratio: 3.491752e-01	ci left: 2.167730e-04	ci right 3.102670e-04	k: 125	n:480000
Cons ci ratio: 6.812511e-03	ci left: 4.068174e-01	ci right 4.096004e-01	k: 195940	n:480000
KS ci ratio: 1.181910e+00	ci left: 9.990437e-06	ci right 3.831291e-05	k: 10	n:480000
C16orf45   480000 perm   167 sec   (2875 perm/sec)   p_kst 2.083333e-05   p_cons 4.082083e-01   p_joint 2.604167e-04

Joint ci ratio: 3.477983e-01	ci left: 2.142112e-04	ci right 3.061538e-04	k: 126	n:490000
Cons ci ratio: 6.740704e-03	ci left: 4.069702e-01	ci right 4.097248e-01	k: 200090	n:490000
KS ci ratio: 1.181910e+00	ci left: 9.786550e-06	ci right 3.753102e-05	k: 10	n:490000
C16orf45   490000 perm   172 sec   (2845 perm/sec)   p_kst 2.040816e-05   p_cons 4.083469e-01   p_joint 2.571429e-04

Joint ci ratio: 3.424468e-01	ci left: 2.172337e-04	ci right 3.087214e-04	k: 130	n:500000
Cons ci ratio: 6.669546e-03	ci left: 4.072310e-01	ci right 4.099581e-01	k: 204297	n:500000
KS ci ratio: 1.181910e+00	ci left: 9.590818e-06	ci right 3.678040e-05	k: 10	n:500000
C16orf45   500000 perm   178 sec   (2814 perm/sec)   p_kst 2.000000e-05   p_cons 4.085940e-01   p_joint 2.600000e-04

Joint ci ratio: 3.385916e-01	ci left: 2.183537e-04	ci right 3.090514e-04	k: 133	n:510000
Cons ci ratio: 6.602950e-03	ci left: 4.073092e-01	ci right 4.100095e-01	k: 208416	n:510000
KS ci ratio: 1.181911e+00	ci left: 9.402762e-06	ci right 3.605923e-05	k: 10	n:510000
C16orf45   510000 perm   183 sec   (2784 perm/sec)   p_kst 1.960784e-05   p_cons 4.086588e-01   p_joint 2.607843e-04

Joint ci ratio: 3.519841e-01	ci left: 1.965903e-04	ci right 2.822174e-04	k: 123	n:520000
Cons ci ratio: 6.537425e-03	ci left: 4.074499e-01	ci right 4.101242e-01	k: 212569	n:520000
KS ci ratio: 1.181911e+00	ci left: 9.221939e-06	ci right 3.536578e-05	k: 10	n:520000
C16orf45   520000 perm   189 sec   (2753 perm/sec)   p_kst 1.923077e-05   p_cons 4.087865e-01   p_joint 2.365385e-04

Joint ci ratio: 3.491795e-01	ci left: 1.963224e-04	ci right 2.809972e-04	k: 125	n:530000
Cons ci ratio: 6.476642e-03	ci left: 4.073742e-01	ci right 4.100230e-01	k: 216610	n:530000
KS ci ratio: 1.181911e+00	ci left: 9.047939e-06	ci right 3.469851e-05	k: 10	n:530000
C16orf45   530000 perm   195 sec   (2725 perm/sec)   p_kst 1.886792e-05   p_cons 4.086981e-01   p_joint 2.358491e-04

Joint ci ratio: 3.687237e-01	ci left: 1.707816e-04	ci right 2.495597e-04	k: 112	n:540000
Cons ci ratio: 6.415533e-03	ci left: 4.074513e-01	ci right 4.100756e-01	k: 220732	n:540000
KS ci ratio: 1.181911e+00	ci left: 8.880384e-06	ci right 3.405595e-05	k: 10	n:540000
C16orf45   540000 perm   200 sec   (2696 perm/sec)   p_kst 1.851852e-05   p_cons 4.087630e-01   p_joint 2.074074e-04

Joint ci ratio: 3.655033e-01	ci left: 1.709774e-04	ci right 2.489927e-04	k: 114	n:550000
Cons ci ratio: 6.356408e-03	ci left: 4.075040e-01	ci right 4.101043e-01	k: 224842	n:550000
KS ci ratio: 1.181912e+00	ci left: 8.718922e-06	ci right 3.343676e-05	k: 10	n:550000
C16orf45   550000 perm   206 sec   (2668 perm/sec)   p_kst 1.818182e-05   p_cons 4.088036e-01   p_joint 2.072727e-04

Joint ci ratio: 3.578067e-01	ci left: 1.760417e-04	ci right 2.542826e-04	k: 119	n:560000
Cons ci ratio: 6.300307e-03	ci left: 4.074460e-01	ci right 4.100228e-01	k: 228891	n:560000
KS ci ratio: 1.181912e+00	ci left: 8.563226e-06	ci right 3.283968e-05	k: 10	n:560000
C16orf45   560000 perm   212 sec   (2642 perm/sec)   p_kst 1.785714e-05   p_cons 4.087339e-01   p_joint 2.125000e-04

Joint ci ratio: 3.608276e-01	ci left: 1.697611e-04	ci right 2.459975e-04	k: 117	n:570000
Cons ci ratio: 6.246709e-03	ci left: 4.073094e-01	ci right 4.098634e-01	k: 232894	n:570000
KS ci ratio: 1.181912e+00	ci left: 8.412994e-06	ci right 3.226355e-05	k: 10	n:570000
C16orf45   570000 perm   218 sec   (2616 perm/sec)   p_kst 1.754386e-05   p_cons 4.085860e-01   p_joint 2.052632e-04

Joint ci ratio: 3.862144e-01	ci left: 1.433967e-04	ci right 2.134805e-04	k: 102	n:580000
Cons ci ratio: 6.192909e-03	ci left: 4.072983e-01	ci right 4.098302e-01	k: 236967	n:580000
KS ci ratio: 1.181912e+00	ci left: 8.267942e-06	ci right 3.170728e-05	k: 10	n:580000
C16orf45   580000 perm   224 sec   (2590 perm/sec)   p_kst 1.724138e-05   p_cons 4.085638e-01   p_joint 1.758621e-04

Joint ci ratio: 3.825185e-01	ci left: 1.440285e-04	ci right 2.135781e-04	k: 104	n:590000
Cons ci ratio: 6.140668e-03	ci left: 4.072724e-01	ci right 4.097827e-01	k: 241031	n:590000
KS ci ratio: 1.181912e+00	ci left: 8.127806e-06	ci right 3.116987e-05	k: 10	n:590000
C16orf45   590000 perm   230 sec   (2565 perm/sec)   p_kst 1.694915e-05   p_cons 4.085271e-01   p_joint 1.762712e-04

Joint ci ratio: 3.843540e-01	ci left: 1.401220e-04	ci right 2.081920e-04	k: 103	n:600000
Cons ci ratio: 6.088783e-03	ci left: 4.073225e-01	ci right 4.098118e-01	k: 245140	n:600000
KS ci ratio: 1.131594e+00	ci left: 9.151968e-06	ci right 3.280316e-05	k: 11	n:600000
C16orf45   600000 perm   236 sec   (2540 perm/sec)   p_kst 1.833333e-05   p_cons 4.085667e-01   p_joint 1.716667e-04

Joint ci ratio: 3.825196e-01	ci left: 1.393062e-04	ci right 2.065756e-04	k: 104	n:610000
Cons ci ratio: 6.038028e-03	ci left: 4.073840e-01	ci right 4.098529e-01	k: 249257	n:610000
KS ci ratio: 1.131594e+00	ci left: 9.001936e-06	ci right 3.226541e-05	k: 11	n:610000
C16orf45   610000 perm   242 sec   (2516 perm/sec)   p_kst 1.803279e-05   p_cons 4.086180e-01   p_joint 1.704918e-04

Joint ci ratio: 3.789277e-01	ci left: 1.399764e-04	ci right 2.067769e-04	k: 106	n:620000
Cons ci ratio: 5.991139e-03	ci left: 4.072325e-01	ci right 4.096812e-01	k: 253243	n:620000
KS ci ratio: 1.131595e+00	ci left: 8.856742e-06	ci right 3.174500e-05	k: 11	n:620000
C16orf45   620000 perm   249 sec   (2491 perm/sec)   p_kst 1.774194e-05   p_cons 4.084565e-01   p_joint 1.709677e-04

Joint ci ratio: 3.754351e-01	ci left: 1.406282e-04	ci right 2.069689e-04	k: 108	n:630000
Cons ci ratio: 5.944700e-03	ci left: 4.071367e-01	ci right 4.095657e-01	k: 257261	n:630000
KS ci ratio: 1.131595e+00	ci left: 8.716159e-06	ci right 3.124112e-05	k: 11	n:630000
C16orf45   630000 perm   255 sec   (2467 perm/sec)   p_kst 1.746032e-05   p_cons 4.083508e-01   p_joint 1.714286e-04

Joint ci ratio: 3.862177e-01	ci left: 1.299531e-04	ci right 1.934671e-04	k: 102	n:640000
Cons ci ratio: 5.899019e-03	ci left: 4.070689e-01	ci right 4.094788e-01	k: 261295	n:640000
KS ci ratio: 1.131595e+00	ci left: 8.579968e-06	ci right 3.075298e-05	k: 11	n:640000
C16orf45   640000 perm   262 sec   (2444 perm/sec)   p_kst 1.718750e-05   p_cons 4.082734e-01   p_joint 1.593750e-04

Joint ci ratio: 3.807127e-01	ci left: 1.321243e-04	ci right 1.955488e-04	k: 105	n:650000
Cons ci ratio: 5.852958e-03	ci left: 4.071201e-01	ci right 4.095115e-01	k: 265405	n:650000
KS ci ratio: 1.131595e+00	ci left: 8.447968e-06	ci right 3.027986e-05	k: 11	n:650000
C16orf45   650000 perm   268 sec   (2421 perm/sec)   p_kst 1.692308e-05   p_cons 4.083154e-01   p_joint 1.615385e-04

Joint ci ratio: 3.754366e-01	ci left: 1.342360e-04	ci right 1.975614e-04	k: 108	n:660000
Cons ci ratio: 5.808360e-03	ci left: 4.071365e-01	ci right 4.095097e-01	k: 269493	n:660000
KS ci ratio: 1.131595e+00	ci left: 8.319968e-06	ci right 2.982107e-05	k: 11	n:660000
C16orf45   660000 perm   275 sec   (2399 perm/sec)   p_kst 1.666667e-05   p_cons 4.083227e-01   p_joint 1.636364e-04

Joint ci ratio: 3.754371e-01	ci left: 1.322324e-04	ci right 1.946127e-04	k: 108	n:670000
Cons ci ratio: 5.765087e-03	ci left: 4.071257e-01	ci right 4.094811e-01	k: 273563	n:670000
KS ci ratio: 1.131596e+00	ci left: 8.195789e-06	ci right 2.937599e-05	k: 11	n:670000
C16orf45   670000 perm   282 sec   (2378 perm/sec)   p_kst 1.641791e-05   p_cons 4.083030e-01   p_joint 1.611940e-04

Joint ci ratio: 4.042889e-01	ci left: 1.103881e-04	ci right 1.675434e-04	k: 93	n:680000
Cons ci ratio: 5.721199e-03	ci left: 4.072475e-01	ci right 4.095856e-01	k: 277723	n:680000
KS ci ratio: 1.131596e+00	ci left: 8.075263e-06	ci right 2.894399e-05	k: 11	n:680000
C16orf45   680000 perm   288 sec   (2357 perm/sec)   p_kst 1.617647e-05   p_cons 4.084162e-01   p_joint 1.367647e-04

Joint ci ratio: 4.021555e-01	ci left: 1.100906e-04	ci right 1.667108e-04	k: 94	n:690000
Cons ci ratio: 5.678588e-03	ci left: 4.073413e-01	ci right 4.096624e-01	k: 281866	n:690000
KS ci ratio: 1.087201e+00	ci left: 8.986372e-06	ci right 3.037891e-05	k: 12	n:690000
C16orf45   690000 perm   295 sec   (2336 perm/sec)   p_kst 1.739130e-05   p_cons 4.085014e-01   p_joint 1.362319e-04

Joint ci ratio: 4.000556e-01	ci left: 1.098023e-04	ci right 1.659012e-04	k: 95	n:700000
Cons ci ratio: 5.636582e-03	ci left: 4.074610e-01	ci right 4.097655e-01	k: 286029	n:700000
KS ci ratio: 1.087202e+00	ci left: 8.857995e-06	ci right 2.994493e-05	k: 12	n:700000
C16orf45   700000 perm   302 sec   (2316 perm/sec)   p_kst 1.714286e-05   p_cons 4.086129e-01   p_joint 1.357143e-04

Joint ci ratio: 3.959522e-01	ci left: 1.107907e-04	ci right 1.666620e-04	k: 97	n:710000
Cons ci ratio: 5.596961e-03	ci left: 4.074506e-01	ci right 4.097389e-01	k: 290102	n:710000
KS ci ratio: 1.087202e+00	ci left: 8.733234e-06	ci right 2.952317e-05	k: 12	n:710000
C16orf45   710000 perm   309 sec   (2296 perm/sec)   p_kst 1.690141e-05   p_cons 4.085944e-01   p_joint 1.366197e-04

Joint ci ratio: 3.939475e-01	ci left: 1.105029e-04	ci right 1.658734e-04	k: 98	n:720000
Cons ci ratio: 5.557893e-03	ci left: 4.074642e-01	ci right 4.097365e-01	k: 294192	n:720000
KS ci ratio: 1.087202e+00	ci left: 8.611939e-06	ci right 2.911313e-05	k: 12	n:720000
C16orf45   720000 perm   316 sec   (2276 perm/sec)   p_kst 1.666667e-05   p_cons 4.086000e-01   p_joint 1.361111e-04

Joint ci ratio: 3.939478e-01	ci left: 1.089892e-04	ci right 1.636012e-04	k: 98	n:730000
Cons ci ratio: 5.519240e-03	ci left: 4.075117e-01	ci right 4.097684e-01	k: 298307	n:730000
KS ci ratio: 1.087202e+00	ci left: 8.493966e-06	ci right 2.871432e-05	k: 12	n:730000
C16orf45   730000 perm   323 sec   (2257 perm/sec)   p_kst 1.643836e-05   p_cons 4.086397e-01   p_joint 1.342466e-04

Joint ci ratio: 4.438289e-01	ci left: 8.211868e-05	ci right 1.300480e-04	k: 77	n:740000
Cons ci ratio: 5.481107e-03	ci left: 4.075823e-01	ci right 4.098238e-01	k: 302440	n:740000
KS ci ratio: 1.047653e+00	ci left: 9.354022e-06	ci right 3.004089e-05	k: 13	n:740000
C16orf45   740000 perm   331 sec   (2238 perm/sec)   p_kst 1.756757e-05   p_cons 4.087027e-01   p_joint 1.040541e-04

Joint ci ratio: 4.410109e-01	ci left: 8.220853e-05	ci right 1.297950e-04	k: 78	n:750000
Cons ci ratio: 5.445556e-03	ci left: 4.074912e-01	ci right 4.097175e-01	k: 306453	n:750000
KS ci ratio: 1.012129e+00	ci left: 1.020528e-05	ci right 3.131930e-05	k: 14	n:750000
C16orf45   750000 perm   338 sec   (2219 perm/sec)   p_kst 1.866667e-05   p_cons 4.086040e-01   p_joint 1.040000e-04

Joint ci ratio: 4.382460e-01	ci left: 8.229695e-05	ci right 1.295478e-04	k: 79	n:760000
Cons ci ratio: 5.410319e-03	ci left: 4.074353e-01	ci right 4.096469e-01	k: 310491	n:760000
KS ci ratio: 1.012129e+00	ci left: 1.007100e-05	ci right 3.090720e-05	k: 14	n:760000
C16orf45   760000 perm   345 sec   (2200 perm/sec)   p_kst 1.842105e-05   p_cons 4.085408e-01   p_joint 1.039474e-04

Joint ci ratio: 4.355324e-01	ci left: 8.238398e-05	ci right 1.293061e-04	k: 80	n:770000
Cons ci ratio: 5.375570e-03	ci left: 4.073979e-01	ci right 4.095950e-01	k: 314542	n:770000
KS ci ratio: 9.799892e-01	ci left: 1.090314e-05	ci right 3.212995e-05	k: 15	n:770000
C16orf45   770000 perm   353 sec   (2182 perm/sec)   p_kst 1.948052e-05   p_cons 4.084961e-01   p_joint 1.038961e-04

Joint ci ratio: 4.355327e-01	ci left: 8.132777e-05	ci right 1.276483e-04	k: 80	n:780000
Cons ci ratio: 5.342133e-03	ci left: 4.073025e-01	ci right 4.094854e-01	k: 318547	n:780000
KS ci ratio: 9.799893e-01	ci left: 1.076335e-05	ci right 3.171803e-05	k: 15	n:780000
C16orf45   780000 perm   360 sec   (2164 perm/sec)   p_kst 1.923077e-05   p_cons 4.083936e-01   p_joint 1.025641e-04

Joint ci ratio: 4.355330e-01	ci left: 8.029829e-05	ci right 1.260325e-04	k: 80	n:790000
Cons ci ratio: 5.308033e-03	ci left: 4.073259e-01	ci right 4.094950e-01	k: 322644	n:790000
KS ci ratio: 9.799895e-01	ci left: 1.062711e-05	ci right 3.131654e-05	k: 15	n:790000
C16orf45   790000 perm   368 sec   (2147 perm/sec)   p_kst 1.898734e-05   p_cons 4.084101e-01   p_joint 1.012658e-04

Joint ci ratio: 4.328691e-01	ci left: 8.040790e-05	ci right 1.258430e-04	k: 81	n:800000
Cons ci ratio: 5.273964e-03	ci left: 4.074051e-01	ci right 4.095606e-01	k: 326786	n:800000
KS ci ratio: 9.799896e-01	ci left: 1.049427e-05	ci right 3.092509e-05	k: 15	n:800000
C16orf45   800000 perm   376 sec   (2130 perm/sec)   p_kst 1.875000e-05   p_cons 4.084825e-01   p_joint 1.012500e-04

Joint ci ratio: 4.302536e-01	ci left: 8.051564e-05	ci right 1.256573e-04	k: 82	n:810000
Cons ci ratio: 5.240609e-03	ci left: 4.074761e-01	ci right 4.096184e-01	k: 330923	n:810000
KS ci ratio: 9.799897e-01	ci left: 1.036471e-05	ci right 3.054330e-05	k: 15	n:810000
C16orf45   810000 perm   383 sec   (2112 perm/sec)   p_kst 1.851852e-05   p_cons 4.085469e-01   p_joint 1.012346e-04

Joint ci ratio: 4.276849e-01	ci left: 8.062156e-05	ci right 1.254753e-04	k: 83	n:820000
Cons ci ratio: 5.207944e-03	ci left: 4.075394e-01	ci right 4.096686e-01	k: 335055	n:820000
KS ci ratio: 9.799898e-01	ci left: 1.023831e-05	ci right 3.017082e-05	k: 15	n:820000
C16orf45   820000 perm   391 sec   (2095 perm/sec)   p_kst 1.829268e-05   p_cons 4.086037e-01   p_joint 1.012195e-04

Joint ci ratio: 4.276852e-01	ci left: 7.965020e-05	ci right 1.239636e-04	k: 83	n:830000
Cons ci ratio: 5.175974e-03	ci left: 4.075928e-01	ci right 4.097091e-01	k: 339180	n:830000
KS ci ratio: 9.799900e-01	ci left: 1.011496e-05	ci right 2.980732e-05	k: 15	n:830000
C16orf45   830000 perm   399 sec   (2079 perm/sec)   p_kst 1.807229e-05   p_cons 4.086506e-01   p_joint 1.000000e-04

Joint ci ratio: 4.355343e-01	ci left: 7.551859e-05	ci right 1.185307e-04	k: 80	n:840000
Cons ci ratio: 5.144153e-03	ci left: 4.076853e-01	ci right 4.097891e-01	k: 343339	n:840000
KS ci ratio: 9.507295e-01	ci left: 1.088740e-05	ci right 3.093196e-05	k: 16	n:840000
C16orf45   840000 perm   407 sec   (2062 perm/sec)   p_kst 1.904762e-05   p_cons 4.087369e-01   p_joint 9.523810e-05

Joint ci ratio: 4.302546e-01	ci left: 7.672663e-05	ci right 1.197440e-04	k: 82	n:850000
Cons ci ratio: 5.114668e-03	ci left: 4.076100e-01	ci right 4.097012e-01	k: 347357	n:850000
KS ci ratio: 9.239425e-01	ci left: 1.165078e-05	ci right 3.202174e-05	k: 17	n:850000
C16orf45   850000 perm   415 sec   (2046 perm/sec)   p_kst 2.000000e-05   p_cons 4.086553e-01   p_joint 9.647059e-05

Joint ci ratio: 4.302549e-01	ci left: 7.583446e-05	ci right 1.183517e-04	k: 82	n:860000
Cons ci ratio: 5.084864e-03	ci left: 4.076143e-01	ci right 4.096933e-01	k: 351442	n:860000
KS ci ratio: 9.239427e-01	ci left: 1.151530e-05	ci right 3.164940e-05	k: 17	n:860000
C16orf45   860000 perm   424 sec   (2030 perm/sec)   p_kst 1.976744e-05   p_cons 4.086535e-01   p_joint 9.534884e-05

Joint ci ratio: 4.276862e-01	ci left: 7.598809e-05	ci right 1.182642e-04	k: 83	n:870000
Cons ci ratio: 5.055069e-03	ci left: 4.076667e-01	ci right 4.097339e-01	k: 355569	n:870000
KS ci ratio: 8.992993e-01	ci left: 1.226205e-05	ci right 3.269838e-05	k: 18	n:870000
C16orf45   870000 perm   432 sec   (2014 perm/sec)   p_kst 2.068966e-05   p_cons 4.087000e-01   p_joint 9.540230e-05

Joint ci ratio: 4.202471e-01	ci left: 7.816992e-05	ci right 1.206910e-04	k: 86	n:880000
Cons ci ratio: 5.026100e-03	ci left: 4.076885e-01	ci right 4.097439e-01	k: 359670	n:880000
KS ci ratio: 8.765282e-01	ci left: 1.299919e-05	ci right 3.371667e-05	k: 19	n:880000
C16orf45   880000 perm   440 sec   (1999 perm/sec)   p_kst 2.159091e-05   p_cons 4.087159e-01   p_joint 9.772727e-05

Joint ci ratio: 4.202473e-01	ci left: 7.729160e-05	ci right 1.193349e-04	k: 86	n:890000
Cons ci ratio: 4.998030e-03	ci left: 4.076706e-01	ci right 4.097143e-01	k: 363736	n:890000
KS ci ratio: 8.765283e-01	ci left: 1.285313e-05	ci right 3.333784e-05	k: 19	n:890000
C16orf45   890000 perm   449 sec   (1983 perm/sec)   p_kst 2.134831e-05   p_cons 4.086921e-01   p_joint 9.662921e-05

Joint ci ratio: 4.251634e-01	ci left: 7.444698e-05	ci right 1.155517e-04	k: 84	n:900000
Cons ci ratio: 4.969659e-03	ci left: 4.077274e-01	ci right 4.097598e-01	k: 367869	n:900000
KS ci ratio: 8.765284e-01	ci left: 1.271031e-05	ci right 3.296742e-05	k: 19	n:900000
C16orf45   900000 perm   457 sec   (1968 perm/sec)   p_kst 2.111111e-05   p_cons 4.087433e-01   p_joint 9.333333e-05

Joint ci ratio: 4.226843e-01	ci left: 7.461053e-05	ci right 1.154974e-04	k: 85	n:910000
Cons ci ratio: 4.941811e-03	ci left: 4.077787e-01	ci right 4.097999e-01	k: 371998	n:910000
KS ci ratio: 8.765285e-01	ci left: 1.257064e-05	ci right 3.260514e-05	k: 19	n:910000
C16orf45   910000 perm   466 sec   (1954 perm/sec)   p_kst 2.087912e-05   p_cons 4.087890e-01   p_joint 9.340659e-05

Joint ci ratio: 4.226845e-01	ci left: 7.379954e-05	ci right 1.142420e-04	k: 85	n:920000
Cons ci ratio: 4.915818e-03	ci left: 4.076920e-01	ci right 4.097021e-01	k: 376001	n:920000
KS ci ratio: 8.765286e-01	ci left: 1.243400e-05	ci right 3.225074e-05	k: 19	n:920000
C16orf45   920000 perm   474 sec   (1939 perm/sec)   p_kst 2.065217e-05   p_cons 4.086967e-01   p_joint 9.239130e-05

Joint ci ratio: 4.226847e-01	ci left: 7.300599e-05	ci right 1.130136e-04	k: 85	n:930000
Cons ci ratio: 4.889796e-03	ci left: 4.076501e-01	ci right 4.096494e-01	k: 380044	n:930000
KS ci ratio: 8.765288e-01	ci left: 1.230030e-05	ci right 3.190396e-05	k: 19	n:930000
C16orf45   930000 perm   483 sec   (1925 perm/sec)   p_kst 2.043011e-05   p_cons 4.086495e-01   p_joint 9.139785e-05

Joint ci ratio: 4.202484e-01	ci left: 7.318031e-05	ci right 1.129874e-04	k: 86	n:940000
Cons ci ratio: 4.862352e-03	ci left: 4.077910e-01	ci right 4.097797e-01	k: 384258	n:940000
KS ci ratio: 8.765289e-01	ci left: 1.216945e-05	ci right 3.156456e-05	k: 19	n:940000
C16orf45   940000 perm   492 sec   (1911 perm/sec)   p_kst 2.021277e-05   p_cons 4.087851e-01   p_joint 9.148936e-05

Joint ci ratio: 4.178538e-01	ci left: 7.335161e-05	ci right 1.129611e-04	k: 87	n:950000
Cons ci ratio: 4.836839e-03	ci left: 4.077817e-01	ci right 4.097599e-01	k: 388332	n:950000
KS ci ratio: 8.765290e-01	ci left: 1.204135e-05	ci right 3.123230e-05	k: 19	n:950000
C16orf45   950000 perm   501 sec   (1897 perm/sec)   p_kst 2.000000e-05   p_cons 4.087705e-01   p_joint 9.157895e-05

Joint ci ratio: 4.526247e-01	ci left: 6.052747e-05	ci right 9.677011e-05	k: 74	n:960000
Cons ci ratio: 4.812211e-03	ci left: 4.077237e-01	ci right 4.096915e-01	k: 392359	n:960000
KS ci ratio: 8.554043e-01	ci left: 1.272559e-05	ci right 3.217521e-05	k: 20	n:960000
C16orf45   960000 perm   510 sec   (1884 perm/sec)   p_kst 2.083333e-05   p_cons 4.087073e-01   p_joint 7.708333e-05

Joint ci ratio: 4.496370e-01	ci left: 6.081723e-05	ci right 9.691982e-05	k: 75	n:970000
Cons ci ratio: 4.787465e-03	ci left: 4.077163e-01	ci right 4.096739e-01	k: 396434	n:970000
KS ci ratio: 8.554044e-01	ci left: 1.259439e-05	ci right 3.184351e-05	k: 20	n:970000
C16orf45   970000 perm   519 sec   (1870 perm/sec)   p_kst 2.061856e-05   p_cons 4.086948e-01   p_joint 7.731959e-05

Joint ci ratio: 4.438347e-01	ci left: 6.200782e-05	ci right 9.819984e-05	k: 77	n:980000
Cons ci ratio: 4.763318e-03	ci left: 4.076867e-01	ci right 4.096343e-01	k: 400487	n:980000
KS ci ratio: 8.357370e-01	ci left: 1.326467e-05	ci right 3.275566e-05	k: 21	n:980000
C16orf45   980000 perm   528 sec   (1857 perm/sec)   p_kst 2.142857e-05   p_cons 4.086602e-01   p_joint 7.857143e-05

Joint ci ratio: 4.410166e-01	ci left: 6.227903e-05	ci right 9.832988e-05	k: 78	n:990000
Cons ci ratio: 4.739444e-03	ci left: 4.076668e-01	ci right 4.096045e-01	k: 404549	n:990000
KS ci ratio: 8.357371e-01	ci left: 1.313068e-05	ci right 3.242480e-05	k: 21	n:990000
C16orf45   990000 perm   537 sec   (1844 perm/sec)   p_kst 2.121212e-05   p_cons 4.086354e-01   p_joint 7.878788e-05

Joint ci ratio: 4.410168e-01	ci left: 6.165624e-05	ci right 9.734659e-05	k: 78	n:1000000
Cons ci ratio: 4.715398e-03	ci left: 4.077013e-01	ci right 4.096293e-01	k: 408665	n:1000000
KS ci ratio: 8.357372e-01	ci left: 1.299938e-05	ci right 3.210055e-05	k: 21	n:1000000
C16orf45   1000000 perm   546 sec   (1831 perm/sec)   p_kst 2.100000e-05   p_cons 4.086650e-01   p_joint 7.800000e-05

Joint ci ratio: 4.382517e-01	ci left: 6.192626e-05	ci right 9.748180e-05	k: 79	n:1010000
Cons ci ratio: 4.691551e-03	ci left: 4.077519e-01	ci right 4.096704e-01	k: 412798	n:1010000
KS ci ratio: 8.357373e-01	ci left: 1.287067e-05	ci right 3.178273e-05	k: 21	n:1010000
C16orf45   1010000 perm   555 sec   (1819 perm/sec)   p_kst 2.079208e-05   p_cons 4.087109e-01   p_joint 7.821782e-05

Joint ci ratio: 4.355380e-01	ci left: 6.219168e-05	ci right 9.761370e-05	k: 80	n:1020000
Cons ci ratio: 4.668346e-03	ci left: 4.077722e-01	ci right 4.096812e-01	k: 416901	n:1020000
KS ci ratio: 8.357374e-01	ci left: 1.274449e-05	ci right 3.147113e-05	k: 21	n:1020000
C16orf45   1020000 perm   564 sec   (1807 perm/sec)   p_kst 2.058824e-05   p_cons 4.087265e-01   p_joint 7.843137e-05

Joint ci ratio: 4.355382e-01	ci left: 6.158787e-05	ci right 9.666600e-05	k: 80	n:1030000
Cons ci ratio: 4.645874e-03	ci left: 4.077514e-01	ci right 4.096511e-01	k: 420962	n:1030000
KS ci ratio: 8.357375e-01	ci left: 1.262075e-05	ci right 3.116559e-05	k: 21	n:1030000
C16orf45   1030000 perm   574 sec   (1795 perm/sec)   p_kst 2.038835e-05   p_cons 4.087010e-01   p_joint 7.766990e-05

Joint ci ratio: 4.355384e-01	ci left: 6.099567e-05	ci right 9.573653e-05	k: 80	n:1040000
Cons ci ratio: 4.623006e-03	ci left: 4.078059e-01	ci right 4.096965e-01	k: 425101	n:1040000
KS ci ratio: 8.357376e-01	ci left: 1.249940e-05	ci right 3.086592e-05	k: 21	n:1040000
C16orf45   1040000 perm   583 sec   (1783 perm/sec)   p_kst 2.019231e-05   p_cons 4.087510e-01   p_joint 7.692308e-05

Joint ci ratio: 4.328745e-01	ci left: 6.126302e-05	ci right 9.588063e-05	k: 81	n:1050000
Cons ci ratio: 4.601370e-03	ci left: 4.077652e-01	ci right 4.096467e-01	k: 429141	n:1050000
KS ci ratio: 8.357377e-01	ci left: 1.238036e-05	ci right 3.057196e-05	k: 21	n:1050000
C16orf45   1050000 perm   593 sec   (1772 perm/sec)   p_kst 2.000000e-05   p_cons 4.087057e-01   p_joint 7.714286e-05

Joint ci ratio: 4.302589e-01	ci left: 6.152596e-05	ci right 9.602139e-05	k: 82	n:1060000
Cons ci ratio: 4.579516e-03	ci left: 4.077800e-01	ci right 4.096526e-01	k: 433239	n:1060000
KS ci ratio: 8.173672e-01	ci left: 1.300691e-05	ci right 3.142272e-05	k: 22	n:1060000
C16orf45   1060000 perm   602 sec   (1760 perm/sec)   p_kst 2.075472e-05   p_cons 4.087160e-01   p_joint 7.735849e-05

Joint ci ratio: 4.302590e-01	ci left: 6.095095e-05	ci right 9.512400e-05	k: 82	n:1070000
Cons ci ratio: 4.558209e-03	ci left: 4.077693e-01	ci right 4.096331e-01	k: 437310	n:1070000
KS ci ratio: 8.173673e-01	ci left: 1.288535e-05	ci right 3.112905e-05	k: 22	n:1070000
C16orf45   1070000 perm   612 sec   (1748 perm/sec)   p_kst 2.056075e-05   p_cons 4.087009e-01   p_joint 7.663551e-05

Joint ci ratio: 4.302592e-01	ci left: 6.038658e-05	ci right 9.424323e-05	k: 82	n:1080000
Cons ci ratio: 4.537335e-03	ci left: 4.077440e-01	ci right 4.095991e-01	k: 441365	n:1080000
KS ci ratio: 8.173674e-01	ci left: 1.276605e-05	ci right 3.084082e-05	k: 22	n:1080000
C16orf45   1080000 perm   622 sec   (1736 perm/sec)   p_kst 2.037037e-05   p_cons 4.086713e-01   p_joint 7.592593e-05

Joint ci ratio: 4.251669e-01	ci left: 6.146989e-05	ci right 9.540987e-05	k: 84	n:1090000
Cons ci ratio: 4.516788e-03	ci left: 4.077146e-01	ci right 4.095612e-01	k: 445415	n:1090000
KS ci ratio: 8.001575e-01	ci left: 1.337622e-05	ci right 3.166157e-05	k: 23	n:1090000
C16orf45   1090000 perm   632 sec   (1725 perm/sec)   p_kst 2.110092e-05   p_cons 4.086376e-01   p_joint 7.706422e-05

Joint ci ratio: 4.251671e-01	ci left: 6.091107e-05	ci right 9.454252e-05	k: 84	n:1100000
Cons ci ratio: 4.496129e-03	ci left: 4.077275e-01	ci right 4.095657e-01	k: 449511	n:1100000
KS ci ratio: 8.001576e-01	ci left: 1.325461e-05	ci right 3.137374e-05	k: 23	n:1100000
C16orf45   1100000 perm   642 sec   (1714 perm/sec)   p_kst 2.090909e-05   p_cons 4.086464e-01   p_joint 7.636364e-05

Joint ci ratio: 4.226879e-01	ci left: 6.116709e-05	ci right 9.468727e-05	k: 85	n:1110000
Cons ci ratio: 4.475818e-03	ci left: 4.077330e-01	ci right 4.095629e-01	k: 453599	n:1110000
KS ci ratio: 7.839908e-01	ci left: 1.385343e-05	ci right 3.217109e-05	k: 24	n:1110000
C16orf45   1110000 perm   652 sec   (1702 perm/sec)   p_kst 2.162162e-05   p_cons 4.086477e-01   p_joint 7.657658e-05

Joint ci ratio: 4.202516e-01	ci left: 6.141910e-05	ci right 9.482888e-05	k: 86	n:1120000
Cons ci ratio: 4.455302e-03	ci left: 4.077903e-01	ci right 4.096120e-01	k: 457745	n:1120000
KS ci ratio: 7.839909e-01	ci left: 1.372974e-05	ci right 3.188385e-05	k: 24	n:1120000
C16orf45   1120000 perm   662 sec   (1692 perm/sec)   p_kst 2.142857e-05   p_cons 4.087009e-01   p_joint 7.678571e-05

Joint ci ratio: 4.202517e-01	ci left: 6.087557e-05	ci right 9.398969e-05	k: 86	n:1130000
Cons ci ratio: 4.435804e-03	ci left: 4.077660e-01	ci right 4.095796e-01	k: 461800	n:1130000
KS ci ratio: 7.839910e-01	ci left: 1.360823e-05	ci right 3.160169e-05	k: 24	n:1130000
C16orf45   1130000 perm   672 sec   (1681 perm/sec)   p_kst 2.123894e-05   p_cons 4.086726e-01   p_joint 7.610619e-05

Joint ci ratio: 4.202519e-01	ci left: 6.034157e-05	ci right 9.316523e-05	k: 86	n:1140000
Cons ci ratio: 4.416970e-03	ci left: 4.076974e-01	ci right 4.095030e-01	k: 465804	n:1140000
KS ci ratio: 7.839911e-01	ci left: 1.348886e-05	ci right 3.132449e-05	k: 24	n:1140000
C16orf45   1140000 perm   683 sec   (1670 perm/sec)   p_kst 2.105263e-05   p_cons 4.086000e-01   p_joint 7.543860e-05

Joint ci ratio: 4.202520e-01	ci left: 5.981686e-05	ci right 9.235510e-05	k: 86	n:1150000
Cons ci ratio: 4.397518e-03	ci left: 4.077240e-01	ci right 4.095217e-01	k: 469916	n:1150000
KS ci ratio: 7.687662e-01	ci left: 1.406847e-05	ci right 3.209108e-05	k: 25	n:1150000
C16orf45   1150000 perm   693 sec   (1659 perm/sec)   p_kst 2.173913e-05   p_cons 4.086226e-01   p_joint 7.478261e-05

Joint ci ratio: 4.556760e-01	ci left: 4.932820e-05	ci right 7.912569e-05	k: 73	n:1160000
Cons ci ratio: 4.378571e-03	ci left: 4.077225e-01	ci right 4.095125e-01	k: 473996	n:1160000
KS ci ratio: 7.687663e-01	ci left: 1.394719e-05	ci right 3.181443e-05	k: 25	n:1160000
C16orf45   1160000 perm   703 sec   (1650 perm/sec)   p_kst 2.155172e-05   p_cons 4.086172e-01   p_joint 6.293103e-05

Joint ci ratio: 4.526279e-01	ci left: 4.966349e-05	ci right 7.940126e-05	k: 74	n:1170000
Cons ci ratio: 4.359835e-03	ci left: 4.077245e-01	ci right 4.095068e-01	k: 478080	n:1170000
KS ci ratio: 7.687664e-01	ci left: 1.382798e-05	ci right 3.154252e-05	k: 25	n:1170000
C16orf45   1170000 perm   714 sec   (1640 perm/sec)   p_kst 2.136752e-05   p_cons 4.086154e-01   p_joint 6.324786e-05

Joint ci ratio: 4.526280e-01	ci left: 4.924261e-05	ci right 7.872837e-05	k: 74	n:1180000
Cons ci ratio: 4.341910e-03	ci left: 4.076629e-01	ci right 4.094376e-01	k: 482089	n:1180000
KS ci ratio: 7.687665e-01	ci left: 1.371079e-05	ci right 3.127521e-05	k: 25	n:1180000
C16orf45   1180000 perm   724 sec   (1629 perm/sec)   p_kst 2.118644e-05   p_cons 4.085500e-01   p_joint 6.271186e-05

Joint ci ratio: 4.496403e-01	ci left: 4.957364e-05	ci right 7.900202e-05	k: 75	n:1190000
Cons ci ratio: 4.323775e-03	ci left: 4.076502e-01	ci right 4.094174e-01	k: 486155	n:1190000
KS ci ratio: 7.687665e-01	ci left: 1.359558e-05	ci right 3.101239e-05	k: 25	n:1190000
C16orf45   1190000 perm   735 sec   (1619 perm/sec)   p_kst 2.100840e-05   p_cons 4.085336e-01   p_joint 6.302521e-05

Joint ci ratio: 5.488979e-01	ci left: 3.092596e-05	ci right 5.493194e-05	k: 50	n:1200000
Cons ci ratio: 4.305894e-03	ci left: 4.076345e-01	ci right 4.093943e-01	k: 490217	n:1200000
KS ci ratio: 7.687666e-01	ci left: 1.348228e-05	ci right 3.075396e-05	k: 25	n:1200000
C16orf45   1200000 perm   746 sec   (1609 perm/sec)   p_kst 2.083333e-05   p_cons 4.085142e-01   p_joint 4.166667e-05

Joint ci ratio: 5.488980e-01	ci left: 3.067037e-05	ci right 5.447796e-05	k: 50	n:1210000
Cons ci ratio: 4.288095e-03	ci left: 4.076347e-01	ci right 4.093872e-01	k: 494298	n:1210000
KS ci ratio: 7.687667e-01	ci left: 1.337085e-05	ci right 3.049979e-05	k: 25	n:1210000
C16orf45   1210000 perm   757 sec   (1599 perm/sec)   p_kst 2.066116e-05   p_cons 4.085107e-01   p_joint 4.132231e-05

Joint ci ratio: 5.488981e-01	ci left: 3.041897e-05	ci right 5.403142e-05	k: 50	n:1220000
Cons ci ratio: 4.270869e-03	ci left: 4.075948e-01	ci right 4.093401e-01	k: 498330	n:1220000
KS ci ratio: 7.687667e-01	ci left: 1.326126e-05	ci right 3.024980e-05	k: 25	n:1220000
C16orf45   1220000 perm   767 sec   (1590 perm/sec)   p_kst 2.049180e-05   p_cons 4.084672e-01   p_joint 4.098361e-05

Joint ci ratio: 5.488982e-01	ci left: 3.017166e-05	ci right 5.359215e-05	k: 50	n:1230000
Cons ci ratio: 4.253206e-03	ci left: 4.076287e-01	ci right 4.093669e-01	k: 502452	n:1230000
KS ci ratio: 7.687668e-01	ci left: 1.315344e-05	ci right 3.000386e-05	k: 25	n:1230000
C16orf45   1230000 perm   778 sec   (1580 perm/sec)   p_kst 2.032520e-05   p_cons 4.084976e-01   p_joint 4.065041e-05

Joint ci ratio: 5.488983e-01	ci left: 2.992834e-05	ci right 5.315995e-05	k: 50	n:1240000
Cons ci ratio: 4.236000e-03	ci left: 4.076346e-01	ci right 4.093658e-01	k: 506540	n:1240000
KS ci ratio: 7.687669e-01	ci left: 1.304737e-05	ci right 2.976190e-05	k: 25	n:1240000
C16orf45   1240000 perm   789 sec   (1571 perm/sec)   p_kst 2.016129e-05   p_cons 4.085000e-01   p_joint 4.032258e-05

Joint ci ratio: 5.488984e-01	ci left: 2.968891e-05	ci right 5.273468e-05	k: 50	n:1250000
Cons ci ratio: 4.219078e-03	ci left: 4.076317e-01	ci right 4.093559e-01	k: 510617	n:1250000
KS ci ratio: 7.687669e-01	ci left: 1.294299e-05	ci right 2.952380e-05	k: 25	n:1250000
C16orf45   1250000 perm   800 sec   (1562 perm/sec)   p_kst 2.000000e-05   p_cons 4.084936e-01   p_joint 4.000000e-05

Joint ci ratio: 5.435948e-01	ci left: 3.013733e-05	ci right 5.321838e-05	k: 51	n:1260000
Cons ci ratio: 4.202771e-03	ci left: 4.075812e-01	ci right 4.092986e-01	k: 514634	n:1260000
KS ci ratio: 7.687670e-01	ci left: 1.284026e-05	ci right 2.928949e-05	k: 25	n:1260000
C16orf45   1260000 perm   811 sec   (1553 perm/sec)   p_kst 1.984127e-05   p_cons 4.084397e-01   p_joint 4.047619e-05

Joint ci ratio: 5.435948e-01	ci left: 2.990002e-05	ci right 5.279934e-05	k: 51	n:1270000
Cons ci ratio: 4.185778e-03	ci left: 4.076323e-01	ci right 4.093429e-01	k: 518779	n:1270000
KS ci ratio: 7.687671e-01	ci left: 1.273916e-05	ci right 2.905887e-05	k: 25	n:1270000
C16orf45   1270000 perm   823 sec   (1544 perm/sec)   p_kst 1.968504e-05   p_cons 4.084874e-01   p_joint 4.015748e-05

Joint ci ratio: 5.435949e-01	ci left: 2.966643e-05	ci right 5.238684e-05	k: 51	n:1280000
Cons ci ratio: 4.169705e-03	ci left: 4.075998e-01	ci right 4.093037e-01	k: 522818	n:1280000
KS ci ratio: 7.687671e-01	ci left: 1.263963e-05	ci right 2.883184e-05	k: 25	n:1280000
C16orf45   1280000 perm   834 sec   (1534 perm/sec)   p_kst 1.953125e-05   p_cons 4.084516e-01   p_joint 3.984375e-05

Joint ci ratio: 5.435950e-01	ci left: 2.943645e-05	ci right 5.198075e-05	k: 51	n:1290000
Cons ci ratio: 4.153422e-03	ci left: 4.076136e-01	ci right 4.093109e-01	k: 526916	n:1290000
KS ci ratio: 7.687672e-01	ci left: 1.254165e-05	ci right 2.860834e-05	k: 25	n:1290000
C16orf45   1290000 perm   846 sec   (1525 perm/sec)   p_kst 1.937984e-05   p_cons 4.084620e-01   p_joint 3.953488e-05

Joint ci ratio: 5.909520e-01	ci left: 2.393803e-05	ci right 4.455414e-05	k: 43	n:1300000
Cons ci ratio: 4.137612e-03	ci left: 4.075941e-01	ci right 4.092848e-01	k: 530971	n:1300000
KS ci ratio: 7.687673e-01	ci left: 1.244518e-05	ci right 2.838828e-05	k: 25	n:1300000
C16orf45   1300000 perm   857 sec   (1516 perm/sec)   p_kst 1.923077e-05   p_cons 4.084392e-01   p_joint 3.307692e-05

Joint ci ratio: 5.909521e-01	ci left: 2.375530e-05	ci right 4.421404e-05	k: 43	n:1310000
Cons ci ratio: 4.121655e-03	ci left: 4.076130e-01	ci right 4.092973e-01	k: 535076	n:1310000
KS ci ratio: 7.687673e-01	ci left: 1.235018e-05	ci right 2.817158e-05	k: 25	n:1310000
C16orf45   1310000 perm   869 sec   (1508 perm/sec)   p_kst 1.908397e-05   p_cons 4.084550e-01   p_joint 3.282443e-05

Joint ci ratio: 5.909522e-01	ci left: 2.357533e-05	ci right 4.387908e-05	k: 43	n:1320000
Cons ci ratio: 4.105991e-03	ci left: 4.076189e-01	ci right 4.092967e-01	k: 539164	n:1320000
KS ci ratio: 7.687674e-01	ci left: 1.225661e-05	ci right 2.795816e-05	k: 25	n:1320000
C16orf45   1320000 perm   881 sec   (1499 perm/sec)   p_kst 1.893939e-05   p_cons 4.084576e-01   p_joint 3.257576e-05

Joint ci ratio: 6.048594e-01	ci left: 2.212212e-05	ci right 4.182017e-05	k: 41	n:1330000
Cons ci ratio: 4.090777e-03	ci left: 4.075923e-01	ci right 4.092638e-01	k: 543209	n:1330000
KS ci ratio: 7.687674e-01	ci left: 1.216446e-05	ci right 2.774794e-05	k: 25	n:1330000
C16orf45   1330000 perm   893 sec   (1490 perm/sec)   p_kst 1.879699e-05   p_cons 4.084278e-01   p_joint 3.082707e-05

Joint ci ratio: 6.048594e-01	ci left: 2.195703e-05	ci right 4.150808e-05	k: 41	n:1340000
Cons ci ratio: 4.074568e-03	ci left: 4.077041e-01	ci right 4.093694e-01	k: 547439	n:1340000
KS ci ratio: 7.687675e-01	ci left: 1.207368e-05	ci right 2.754087e-05	k: 25	n:1340000
C16orf45   1340000 perm   905 sec   (1481 perm/sec)   p_kst 1.865672e-05   p_cons 4.085366e-01   p_joint 3.059701e-05

Joint ci ratio: 6.048595e-01	ci left: 2.179439e-05	ci right 4.120061e-05	k: 41	n:1350000
Cons ci ratio: 4.059171e-03	ci left: 4.077402e-01	ci right 4.093994e-01	k: 551569	n:1350000
KS ci ratio: 7.543965e-01	ci left: 1.258082e-05	ci right 2.821915e-05	k: 26	n:1350000
C16orf45   1350000 perm   917 sec   (1473 perm/sec)   p_kst 1.925926e-05   p_cons 4.085696e-01   p_joint 3.037037e-05

Joint ci ratio: 5.977847e-01	ci left: 2.225737e-05	ci right 4.174374e-05	k: 42	n:1360000
Cons ci ratio: 4.044551e-03	ci left: 4.077038e-01	ci right 4.093569e-01	k: 555601	n:1360000
KS ci ratio: 7.543966e-01	ci left: 1.248832e-05	ci right 2.801166e-05	k: 26	n:1360000
C16orf45   1360000 perm   929 sec   (1465 perm/sec)   p_kst 1.911765e-05   p_cons 4.085301e-01   p_joint 3.088235e-05

Joint ci ratio: 5.909525e-01	ci left: 2.271492e-05	ci right 4.227767e-05	k: 43	n:1370000
Cons ci ratio: 4.029801e-03	ci left: 4.077023e-01	ci right 4.093492e-01	k: 559680	n:1370000
KS ci ratio: 7.543966e-01	ci left: 1.239716e-05	ci right 2.780719e-05	k: 26	n:1370000
C16orf45   1370000 perm   941 sec   (1456 perm/sec)   p_kst 1.897810e-05   p_cons 4.085255e-01   p_joint 3.138686e-05

Joint ci ratio: 5.779626e-01	ci left: 2.378510e-05	ci right 4.363276e-05	k: 45	n:1380000
Cons ci ratio: 4.015205e-03	ci left: 4.077014e-01	ci right 4.093424e-01	k: 563760	n:1380000
KS ci ratio: 7.543967e-01	ci left: 1.230733e-05	ci right 2.760569e-05	k: 26	n:1380000
C16orf45   1380000 perm   952 sec   (1449 perm/sec)   p_kst 1.884058e-05   p_cons 4.085217e-01   p_joint 3.260870e-05

Joint ci ratio: 5.779627e-01	ci left: 2.361399e-05	ci right 4.331886e-05	k: 45	n:1390000
Cons ci ratio: 4.001059e-03	ci left: 4.076654e-01	ci right 4.093005e-01	k: 567791	n:1390000
KS ci ratio: 7.543968e-01	ci left: 1.221879e-05	ci right 2.740709e-05	k: 26	n:1390000
C16orf45   1390000 perm   964 sec   (1441 perm/sec)   p_kst 1.870504e-05   p_cons 4.084827e-01   p_joint 3.237410e-05

Joint ci ratio: 5.779628e-01	ci left: 2.344531e-05	ci right 4.300944e-05	k: 45	n:1400000
Cons ci ratio: 3.986690e-03	ci left: 4.076749e-01	ci right 4.093041e-01	k: 571885	n:1400000
KS ci ratio: 7.543968e-01	ci left: 1.213151e-05	ci right 2.721133e-05	k: 26	n:1400000
C16orf45   1400000 perm   977 sec   (1434 perm/sec)   p_kst 1.857143e-05   p_cons 4.084893e-01   p_joint 3.214286e-05

Joint ci ratio: 5.717810e-01	ci left: 2.388505e-05	ci right 4.351576e-05	k: 46	n:1410000
Cons ci ratio: 3.972614e-03	ci left: 4.076672e-01	ci right 4.092906e-01	k: 575955	n:1410000
KS ci ratio: 7.543969e-01	ci left: 1.204547e-05	ci right 2.701834e-05	k: 26	n:1410000
C16orf45   1410000 perm   989 sec   (1426 perm/sec)   p_kst 1.843972e-05   p_cons 4.084787e-01   p_joint 3.262411e-05

Joint ci ratio: 5.717811e-01	ci left: 2.371684e-05	ci right 4.320931e-05	k: 46	n:1420000
Cons ci ratio: 3.958843e-03	ci left: 4.076407e-01	ci right 4.092583e-01	k: 579998	n:1420000
KS ci ratio: 7.543969e-01	ci left: 1.196064e-05	ci right 2.682807e-05	k: 26	n:1420000
C16orf45   1420000 perm   1001 sec   (1419 perm/sec)   p_kst 1.830986e-05   p_cons 4.084493e-01   p_joint 3.239437e-05

Joint ci ratio: 5.717812e-01	ci left: 2.355099e-05	ci right 4.290715e-05	k: 46	n:1430000
Cons ci ratio: 3.945145e-03	ci left: 4.076229e-01	ci right 4.092348e-01	k: 584053	n:1430000
KS ci ratio: 7.543970e-01	ci left: 1.187700e-05	ci right 2.664046e-05	k: 26	n:1430000
C16orf45   1430000 perm   1013 sec   (1411 perm/sec)   p_kst 1.818182e-05   p_cons 4.084287e-01   p_joint 3.216783e-05

Joint ci ratio: 7.408029e-01	ci left: 1.235640e-05	ci right 2.728015e-05	k: 27	n:1440000
Cons ci ratio: 3.931096e-03	ci left: 4.076657e-01	ci right 4.092721e-01	k: 588195	n:1440000
KS ci ratio: 7.543970e-01	ci left: 1.179452e-05	ci right 2.645546e-05	k: 26	n:1440000
C16orf45   1440000 perm   1026 sec   (1404 perm/sec)   p_kst 1.805556e-05   p_cons 4.084687e-01   p_joint 1.875000e-05

Joint ci ratio: 8.001598e-01	ci left: 1.005522e-05	ci right 2.380080e-05	k: 23	n:1450000
Cons ci ratio: 3.917035e-03	ci left: 4.077280e-01	ci right 4.093289e-01	k: 592366	n:1450000
KS ci ratio: 7.543971e-01	ci left: 1.171318e-05	ci right 2.627301e-05	k: 26	n:1450000
C16orf45   1450000 perm   1038 sec   (1396 perm/sec)   p_kst 1.793103e-05   p_cons 4.085283e-01   p_joint 1.586207e-05

Joint ci ratio: 8.001598e-01	ci left: 9.986345e-06	ci right 2.363778e-05	k: 23	n:1460000
Cons ci ratio: 3.903555e-03	ci left: 4.077360e-01	ci right 4.093314e-01	k: 596459	n:1460000
KS ci ratio: 7.543971e-01	ci left: 1.163295e-05	ci right 2.609306e-05	k: 26	n:1460000
C16orf45   1460000 perm   1051 sec   (1389 perm/sec)   p_kst 1.780822e-05   p_cons 4.085336e-01   p_joint 1.575342e-05

Joint ci ratio: 8.001598e-01	ci left: 9.918411e-06	ci right 2.347698e-05	k: 23	n:1470000
Cons ci ratio: 3.889583e-03	ci left: 4.078222e-01	ci right 4.094122e-01	k: 600667	n:1470000
KS ci ratio: 7.543972e-01	ci left: 1.155382e-05	ci right 2.591556e-05	k: 26	n:1470000
C16orf45   1470000 perm   1064 sec   (1382 perm/sec)   p_kst 1.768707e-05   p_cons 4.086170e-01   p_joint 1.564626e-05

Joint ci ratio: 7.839931e-01	ci left: 1.039006e-05	ci right 2.412835e-05	k: 24	n:1480000
Cons ci ratio: 3.876443e-03	ci left: 4.078221e-01	ci right 4.094067e-01	k: 604749	n:1480000
KS ci ratio: 7.543972e-01	ci left: 1.147575e-05	ci right 2.574045e-05	k: 26	n:1480000
C16orf45   1480000 perm   1077 sec   (1375 perm/sec)   p_kst 1.756757e-05   p_cons 4.086142e-01   p_joint 1.621622e-05

Joint ci ratio: 7.687683e-01	ci left: 1.085820e-05	ci right 2.476831e-05	k: 25	n:1490000
Cons ci ratio: 3.862963e-03	ci left: 4.078810e-01	ci right 4.094603e-01	k: 608919	n:1490000
KS ci ratio: 7.543973e-01	ci left: 1.139873e-05	ci right 2.556770e-05	k: 26	n:1490000
C16orf45   1490000 perm   1089 sec   (1368 perm/sec)   p_kst 1.744966e-05   p_cons 4.086705e-01   p_joint 1.677852e-05

Joint ci ratio: 7.687683e-01	ci left: 1.078582e-05	ci right 2.460319e-05	k: 25	n:1500000
Cons ci ratio: 3.849840e-03	ci left: 4.079118e-01	ci right 4.094859e-01	k: 613048	n:1500000
KS ci ratio: 7.543973e-01	ci left: 1.132274e-05	ci right 2.539725e-05	k: 26	n:1500000
C16orf45   1500000 perm   1103 sec   (1360 perm/sec)   p_kst 1.733333e-05   p_cons 4.086987e-01   p_joint 1.666667e-05

Joint ci ratio: 7.687684e-01	ci left: 1.071439e-05	ci right 2.444026e-05	k: 25	n:1510000
Cons ci ratio: 3.836519e-03	ci left: 4.079839e-01	ci right 4.095528e-01	k: 617240	n:1510000
KS ci ratio: 7.543974e-01	ci left: 1.124775e-05	ci right 2.522905e-05	k: 26	n:1510000
C16orf45   1510000 perm   1116 sec   (1353 perm/sec)   p_kst 1.721854e-05   p_cons 4.087682e-01   p_joint 1.655629e-05

Joint ci ratio: 7.687684e-01	ci left: 1.064390e-05	ci right 2.427947e-05	k: 25	n:1520000
Cons ci ratio: 3.823596e-03	ci left: 4.080223e-01	ci right 4.095860e-01	k: 621382	n:1520000
KS ci ratio: 7.543974e-01	ci left: 1.117376e-05	ci right 2.506307e-05	k: 26	n:1520000
C16orf45   1520000 perm   1129 sec   (1347 perm/sec)   p_kst 1.710526e-05   p_cons 4.088039e-01   p_joint 1.644737e-05

Joint ci ratio: 7.687685e-01	ci left: 1.057433e-05	ci right 2.412078e-05	k: 25	n:1530000
Cons ci ratio: 3.811374e-03	ci left: 4.079875e-01	ci right 4.095461e-01	k: 625413	n:1530000
KS ci ratio: 7.543974e-01	ci left: 1.110072e-05	ci right 2.489926e-05	k: 26	n:1530000
C16orf45   1530000 perm   1142 sec   (1340 perm/sec)   p_kst 1.699346e-05   p_cons 4.087667e-01   p_joint 1.633987e-05

Joint ci ratio: 7.687685e-01	ci left: 1.050566e-05	ci right 2.396415e-05	k: 25	n:1540000
Cons ci ratio: 3.798998e-03	ci left: 4.079877e-01	ci right 4.095412e-01	k: 629497	n:1540000
KS ci ratio: 7.543975e-01	ci left: 1.102864e-05	ci right 2.473758e-05	k: 26	n:1540000
C16orf45   1540000 perm   1155 sec   (1333 perm/sec)   p_kst 1.688312e-05   p_cons 4.087643e-01   p_joint 1.623377e-05

Joint ci ratio: 7.687686e-01	ci left: 1.043789e-05	ci right 2.380954e-05	k: 25	n:1550000
Cons ci ratio: 3.786964e-03	ci left: 4.079595e-01	ci right 4.095080e-01	k: 633537	n:1550000
KS ci ratio: 7.543975e-01	ci left: 1.095749e-05	ci right 2.457798e-05	k: 26	n:1550000
C16orf45   1550000 perm   1169 sec   (1326 perm/sec)   p_kst 1.677419e-05   p_cons 4.087335e-01   p_joint 1.612903e-05

Joint ci ratio: 7.687686e-01	ci left: 1.037098e-05	ci right 2.365692e-05	k: 25	n:1560000
Cons ci ratio: 3.775124e-03	ci left: 4.079214e-01	ci right 4.094649e-01	k: 637561	n:1560000
KS ci ratio: 7.543976e-01	ci left: 1.088725e-05	ci right 2.442043e-05	k: 26	n:1560000
C16orf45   1560000 perm   1182 sec   (1320 perm/sec)   p_kst 1.666667e-05   p_cons 4.086929e-01   p_joint 1.602564e-05

Joint ci ratio: 7.408035e-01	ci left: 1.133326e-05	ci right 2.502129e-05	k: 27	n:1570000
Cons ci ratio: 3.762863e-03	ci left: 4.079519e-01	ci right 4.094905e-01	k: 641692	n:1570000
KS ci ratio: 7.279188e-01	ci left: 1.185086e-05	ci right 2.577556e-05	k: 28	n:1570000
C16orf45   1570000 perm   1195 sec   (1313 perm/sec)   p_kst 1.783439e-05   p_cons 4.087210e-01   p_joint 1.719745e-05

Joint ci ratio: 7.279188e-01	ci left: 1.177585e-05	ci right 2.561243e-05	k: 28	n:1580000
Cons ci ratio: 3.750643e-03	ci left: 4.079922e-01	ci right 4.095259e-01	k: 645839	n:1580000
KS ci ratio: 7.279188e-01	ci left: 1.177585e-05	ci right 2.561243e-05	k: 28	n:1580000
C16orf45   1580000 perm   1209 sec   (1307 perm/sec)   p_kst 1.772152e-05   p_cons 4.087589e-01   p_joint 1.772152e-05

Joint ci ratio: 7.279189e-01	ci left: 1.170179e-05	ci right 2.545134e-05	k: 28	n:1590000
Cons ci ratio: 3.738463e-03	ci left: 4.080420e-01	ci right 4.095709e-01	k: 650002	n:1590000
KS ci ratio: 7.279189e-01	ci left: 1.170179e-05	ci right 2.545134e-05	k: 28	n:1590000
C16orf45   1590000 perm   1223 sec   (1300 perm/sec)   p_kst 1.761006e-05   p_cons 4.088063e-01   p_joint 1.761006e-05

Joint ci ratio: 7.156839e-01	ci left: 1.213863e-05	ci right 2.603042e-05	k: 29	n:1600000
Cons ci ratio: 3.726618e-03	ci left: 4.080631e-01	ci right 4.095872e-01	k: 654120	n:1600000
KS ci ratio: 7.156839e-01	ci left: 1.213863e-05	ci right 2.603042e-05	k: 29	n:1600000
C16orf45   1600000 perm   1236 sec   (1294 perm/sec)   p_kst 1.812500e-05   p_cons 4.088250e-01   p_joint 1.812500e-05

Joint ci ratio: 7.156839e-01	ci left: 1.206323e-05	ci right 2.586874e-05	k: 29	n:1610000
Cons ci ratio: 3.715042e-03	ci left: 4.080635e-01	ci right 4.095828e-01	k: 658205	n:1610000
KS ci ratio: 7.156839e-01	ci left: 1.206323e-05	ci right 2.586874e-05	k: 29	n:1610000
C16orf45   1610000 perm   1251 sec   (1287 perm/sec)   p_kst 1.801242e-05   p_cons 4.088230e-01   p_joint 1.801242e-05

Joint ci ratio: 7.156840e-01	ci left: 1.198877e-05	ci right 2.570906e-05	k: 29	n:1620000
Cons ci ratio: 3.703692e-03	ci left: 4.080484e-01	ci right 4.095631e-01	k: 662265	n:1620000
KS ci ratio: 7.156840e-01	ci left: 1.198877e-05	ci right 2.570906e-05	k: 29	n:1620000
C16orf45   1620000 perm   1264 sec   (1281 perm/sec)   p_kst 1.790123e-05   p_cons 4.088056e-01   p_joint 1.790123e-05

Joint ci ratio: 7.156840e-01	ci left: 1.191522e-05	ci right 2.555133e-05	k: 29	n:1630000
Cons ci ratio: 3.692187e-03	ci left: 4.080672e-01	ci right 4.095773e-01	k: 666380	n:1630000
KS ci ratio: 7.156840e-01	ci left: 1.191522e-05	ci right 2.555133e-05	k: 29	n:1630000
C16orf45   1630000 perm   1279 sec   (1275 perm/sec)   p_kst 1.779141e-05   p_cons 4.088221e-01   p_joint 1.779141e-05

Joint ci ratio: 7.156840e-01	ci left: 1.184256e-05	ci right 2.539553e-05	k: 29	n:1640000
Cons ci ratio: 3.681239e-03	ci left: 4.080267e-01	ci right 4.095321e-01	k: 670398	n:1640000
KS ci ratio: 7.156840e-01	ci left: 1.184256e-05	ci right 2.539553e-05	k: 29	n:1640000
C16orf45   1640000 perm   1293 sec   (1269 perm/sec)   p_kst 1.768293e-05   p_cons 4.087793e-01   p_joint 1.768293e-05

Joint ci ratio: 7.156841e-01	ci left: 1.177079e-05	ci right 2.524162e-05	k: 29	n:1650000
Cons ci ratio: 3.669923e-03	ci left: 4.080479e-01	ci right 4.095488e-01	k: 674517	n:1650000
KS ci ratio: 7.156841e-01	ci left: 1.177079e-05	ci right 2.524162e-05	k: 29	n:1650000
C16orf45   1650000 perm   1306 sec   (1263 perm/sec)   p_kst 1.757576e-05   p_cons 4.087982e-01   p_joint 1.757576e-05

Joint ci ratio: 8.765331e-01	ci left: 6.891123e-06	ci right 1.787395e-05	k: 19	n:1660000
Cons ci ratio: 3.658684e-03	ci left: 4.080725e-01	ci right 4.095688e-01	k: 678642	n:1660000
KS ci ratio: 7.156841e-01	ci left: 1.169988e-05	ci right 2.508957e-05	k: 29	n:1660000
C16orf45   1660000 perm   1321 sec   (1257 perm/sec)   p_kst 1.746988e-05   p_cons 4.088205e-01   p_joint 1.144578e-05

Joint ci ratio: 8.765331e-01	ci left: 6.849858e-06	ci right 1.776692e-05	k: 19	n:1670000
Cons ci ratio: 3.647769e-03	ci left: 4.080674e-01	ci right 4.095592e-01	k: 682718	n:1670000
KS ci ratio: 7.156842e-01	ci left: 1.162982e-05	ci right 2.493933e-05	k: 29	n:1670000
C16orf45   1670000 perm   1335 sec   (1251 perm/sec)   p_kst 1.736527e-05   p_cons 4.088132e-01   p_joint 1.137725e-05

Joint ci ratio: 8.765332e-01	ci left: 6.809085e-06	ci right 1.766117e-05	k: 19	n:1680000
Cons ci ratio: 3.636879e-03	ci left: 4.080719e-01	ci right 4.095593e-01	k: 686810	n:1680000
KS ci ratio: 7.156842e-01	ci left: 1.156060e-05	ci right 2.479088e-05	k: 29	n:1680000
C16orf45   1680000 perm   1349 sec   (1245 perm/sec)   p_kst 1.726190e-05   p_cons 4.088155e-01   p_joint 1.130952e-05

Joint ci ratio: 8.765332e-01	ci left: 6.768795e-06	ci right 1.755666e-05	k: 19	n:1690000
Cons ci ratio: 3.625988e-03	ci left: 4.080894e-01	ci right 4.095724e-01	k: 690924	n:1690000
KS ci ratio: 7.156842e-01	ci left: 1.149219e-05	ci right 2.464419e-05	k: 29	n:1690000
C16orf45   1690000 perm   1364 sec   (1239 perm/sec)   p_kst 1.715976e-05   p_cons 4.088308e-01   p_joint 1.124260e-05

Joint ci ratio: 8.765332e-01	ci left: 6.728978e-06	ci right 1.745339e-05	k: 19	n:1700000
Cons ci ratio: 3.615142e-03	ci left: 4.081138e-01	ci right 4.095924e-01	k: 695050	n:1700000
KS ci ratio: 7.156843e-01	ci left: 1.142459e-05	ci right 2.449922e-05	k: 29	n:1700000
C16orf45   1700000 perm   1378 sec   (1233 perm/sec)   p_kst 1.705882e-05   p_cons 4.088529e-01   p_joint 1.117647e-05

Joint ci ratio: 8.765333e-01	ci left: 6.689628e-06	ci right 1.735132e-05	k: 19	n:1710000
Cons ci ratio: 3.604323e-03	ci left: 4.081472e-01	ci right 4.096215e-01	k: 699192	n:1710000
KS ci ratio: 7.156843e-01	ci left: 1.135778e-05	ci right 2.435596e-05	k: 29	n:1710000
C16orf45   1710000 perm   1393 sec   (1228 perm/sec)   p_kst 1.695906e-05   p_cons 4.088842e-01   p_joint 1.111111e-05

Joint ci ratio: 8.554087e-01	ci left: 7.102642e-06	ci right 1.795830e-05	k: 20	n:1720000
Cons ci ratio: 3.594067e-03	ci left: 4.081175e-01	ci right 4.095875e-01	k: 703226	n:1720000
KS ci ratio: 7.040462e-01	ci left: 1.176798e-05	ci right 2.489925e-05	k: 30	n:1720000
C16orf45   1720000 perm   1407 sec   (1222 perm/sec)   p_kst 1.744186e-05   p_cons 4.088523e-01   p_joint 1.162791e-05

Joint ci ratio: 8.554087e-01	ci left: 7.061586e-06	ci right 1.785450e-05	k: 20	n:1730000
Cons ci ratio: 3.583906e-03	ci left: 4.080869e-01	ci right 4.095527e-01	k: 707258	n:1730000
KS ci ratio: 7.040463e-01	ci left: 1.169996e-05	ci right 2.475532e-05	k: 30	n:1730000
C16orf45   1730000 perm   1422 sec   (1217 perm/sec)   p_kst 1.734104e-05   p_cons 4.088197e-01   p_joint 1.156069e-05

Joint ci ratio: 8.554087e-01	ci left: 7.021002e-06	ci right 1.775189e-05	k: 20	n:1740000
Cons ci ratio: 3.573356e-03	ci left: 4.081211e-01	ci right 4.095826e-01	k: 711402	n:1740000
KS ci ratio: 7.040463e-01	ci left: 1.163272e-05	ci right 2.461305e-05	k: 30	n:1740000
C16orf45   1740000 perm   1437 sec   (1211 perm/sec)   p_kst 1.724138e-05   p_cons 4.088517e-01   p_joint 1.149425e-05

Joint ci ratio: 8.554088e-01	ci left: 6.980882e-06	ci right 1.765045e-05	k: 20	n:1750000
Cons ci ratio: 3.563079e-03	ci left: 4.081303e-01	ci right 4.095877e-01	k: 715503	n:1750000
KS ci ratio: 7.040463e-01	ci left: 1.156624e-05	ci right 2.447240e-05	k: 30	n:1750000
C16orf45   1750000 perm   1452 sec   (1205 perm/sec)   p_kst 1.714286e-05   p_cons 4.088589e-01   p_joint 1.142857e-05

Joint ci ratio: 8.357413e-01	ci left: 7.385998e-06	ci right 1.823899e-05	k: 21	n:1760000
Cons ci ratio: 3.553003e-03	ci left: 4.081241e-01	ci right 4.095773e-01	k: 719577	n:1760000
KS ci ratio: 6.929581e-01	ci left: 1.196764e-05	ci right 2.500106e-05	k: 31	n:1760000
C16orf45   1760000 perm   1467 sec   (1200 perm/sec)   p_kst 1.761364e-05   p_cons 4.088506e-01   p_joint 1.193182e-05

Joint ci ratio: 8.357414e-01	ci left: 7.344269e-06	ci right 1.813595e-05	k: 21	n:1770000
Cons ci ratio: 3.542776e-03	ci left: 4.081502e-01	ci right 4.095993e-01	k: 723708	n:1770000
KS ci ratio: 6.929582e-01	ci left: 1.190003e-05	ci right 2.485981e-05	k: 31	n:1770000
C16orf45   1770000 perm   1481 sec   (1195 perm/sec)   p_kst 1.751412e-05   p_cons 4.088746e-01   p_joint 1.186441e-05

Joint ci ratio: 8.357414e-01	ci left: 7.303009e-06	ci right 1.803406e-05	k: 21	n:1780000
Cons ci ratio: 3.532748e-03	ci left: 4.081608e-01	ci right 4.096058e-01	k: 727812	n:1780000
KS ci ratio: 6.823779e-01	ci left: 1.229665e-05	ci right 2.537881e-05	k: 32	n:1780000
C16orf45   1780000 perm   1496 sec   (1190 perm/sec)   p_kst 1.797753e-05   p_cons 4.088831e-01   p_joint 1.179775e-05

Joint ci ratio: 8.357414e-01	ci left: 7.262210e-06	ci right 1.793331e-05	k: 21	n:1790000
Cons ci ratio: 3.522540e-03	ci left: 4.082076e-01	ci right 4.096486e-01	k: 731981	n:1790000
KS ci ratio: 6.823779e-01	ci left: 1.222795e-05	ci right 2.523703e-05	k: 32	n:1790000
C16orf45   1790000 perm   1511 sec   (1184 perm/sec)   p_kst 1.787709e-05   p_cons 4.089279e-01   p_joint 1.173184e-05

Joint ci ratio: 8.357415e-01	ci left: 7.221865e-06	ci right 1.783368e-05	k: 21	n:1800000
Cons ci ratio: 3.513013e-03	ci left: 4.081722e-01	ci right 4.096092e-01	k: 736003	n:1800000
KS ci ratio: 6.823780e-01	ci left: 1.216002e-05	ci right 2.509683e-05	k: 32	n:1800000
C16orf45   1800000 perm   1526 sec   (1179 perm/sec)   p_kst 1.777778e-05   p_cons 4.088906e-01   p_joint 1.166667e-05

Joint ci ratio: 8.357415e-01	ci left: 7.181965e-06	ci right 1.773516e-05	k: 21	n:1810000
Cons ci ratio: 3.503119e-03	ci left: 4.081986e-01	ci right 4.096316e-01	k: 740136	n:1810000
KS ci ratio: 6.823780e-01	ci left: 1.209284e-05	ci right 2.495817e-05	k: 32	n:1810000
C16orf45   1810000 perm   1542 sec   (1174 perm/sec)   p_kst 1.767956e-05   p_cons 4.089149e-01   p_joint 1.160221e-05

Joint ci ratio: 8.173711e-01	ci left: 7.575445e-06	ci right 1.830119e-05	k: 22	n:1820000
Cons ci ratio: 3.493395e-03	ci left: 4.082125e-01	ci right 4.096416e-01	k: 744247	n:1820000
KS ci ratio: 6.823780e-01	ci left: 1.202639e-05	ci right 2.482104e-05	k: 32	n:1820000
C16orf45   1820000 perm   1557 sec   (1169 perm/sec)   p_kst 1.758242e-05   p_cons 4.089269e-01   p_joint 1.208791e-05

Joint ci ratio: 8.173711e-01	ci left: 7.534049e-06	ci right 1.820118e-05	k: 22	n:1830000
Cons ci ratio: 3.483925e-03	ci left: 4.082023e-01	ci right 4.096275e-01	k: 748314	n:1830000
KS ci ratio: 6.823781e-01	ci left: 1.196067e-05	ci right 2.468540e-05	k: 32	n:1830000
C16orf45   1830000 perm   1572 sec   (1164 perm/sec)   p_kst 1.748634e-05   p_cons 4.089148e-01   p_joint 1.202186e-05

Joint ci ratio: 8.001612e-01	ci left: 7.923944e-06	ci right 1.875608e-05	k: 23	n:1840000
Cons ci ratio: 3.474609e-03	ci left: 4.081814e-01	ci right 4.096026e-01	k: 752361	n:1840000
KS ci ratio: 6.722681e-01	ci left: 1.234551e-05	ci right 2.518701e-05	k: 33	n:1840000
C16orf45   1840000 perm   1588 sec   (1159 perm/sec)   p_kst 1.793478e-05   p_cons 4.088918e-01   p_joint 1.250000e-05

Joint ci ratio: 8.001612e-01	ci left: 7.881111e-06	ci right 1.865469e-05	k: 23	n:1850000
Cons ci ratio: 3.465201e-03	ci left: 4.081839e-01	ci right 4.096013e-01	k: 756451	n:1850000
KS ci ratio: 6.722681e-01	ci left: 1.227878e-05	ci right 2.505087e-05	k: 33	n:1850000
C16orf45   1850000 perm   1603 sec   (1154 perm/sec)   p_kst 1.783784e-05   p_cons 4.088924e-01   p_joint 1.243243e-05

Joint ci ratio: 8.001613e-01	ci left: 7.838740e-06	ci right 1.855440e-05	k: 23	n:1860000
Cons ci ratio: 3.455762e-03	ci left: 4.082014e-01	ci right 4.096150e-01	k: 760569	n:1860000
KS ci ratio: 6.722681e-01	ci left: 1.221276e-05	ci right 2.491618e-05	k: 33	n:1860000
C16orf45   1860000 perm   1619 sec   (1149 perm/sec)   p_kst 1.774194e-05   p_cons 4.089081e-01   p_joint 1.236559e-05

Joint ci ratio: 8.001613e-01	ci left: 7.796821e-06	ci right 1.845518e-05	k: 23	n:1870000
Cons ci ratio: 3.446575e-03	ci left: 4.081942e-01	ci right 4.096040e-01	k: 764641	n:1870000
KS ci ratio: 6.722682e-01	ci left: 1.214745e-05	ci right 2.478294e-05	k: 33	n:1870000
C16orf45   1870000 perm   1635 sec   (1144 perm/sec)   p_kst 1.764706e-05   p_cons 4.088989e-01   p_joint 1.229947e-05

Joint ci ratio: 8.001613e-01	ci left: 7.755349e-06	ci right 1.835701e-05	k: 23	n:1880000
Cons ci ratio: 3.437241e-03	ci left: 4.082179e-01	ci right 4.096239e-01	k: 768771	n:1880000
KS ci ratio: 6.722682e-01	ci left: 1.208284e-05	ci right 2.465112e-05	k: 33	n:1880000
C16orf45   1880000 perm   1651 sec   (1139 perm/sec)   p_kst 1.755319e-05   p_cons 4.089207e-01   p_joint 1.223404e-05

Joint ci ratio: 8.001614e-01	ci left: 7.714315e-06	ci right 1.825989e-05	k: 23	n:1890000
Cons ci ratio: 3.428381e-03	ci left: 4.081852e-01	ci right 4.095875e-01	k: 772795	n:1890000
KS ci ratio: 6.722682e-01	ci left: 1.201891e-05	ci right 2.452069e-05	k: 33	n:1890000
C16orf45   1890000 perm   1666 sec   (1134 perm/sec)   p_kst 1.746032e-05   p_cons 4.088862e-01   p_joint 1.216931e-05

Joint ci ratio: 8.001614e-01	ci left: 7.673713e-06	ci right 1.816378e-05	k: 23	n:1900000
Cons ci ratio: 3.419033e-03	ci left: 4.082313e-01	ci right 4.096300e-01	k: 776968	n:1900000
KS ci ratio: 6.722683e-01	ci left: 1.195565e-05	ci right 2.439164e-05	k: 33	n:1900000
C16orf45   1900000 perm   1682 sec   (1129 perm/sec)   p_kst 1.736842e-05   p_cons 4.089305e-01   p_joint 1.210526e-05

Joint ci ratio: 8.001614e-01	ci left: 7.633537e-06	ci right 1.806869e-05	k: 23	n:1910000
Cons ci ratio: 3.410006e-03	ci left: 4.082424e-01	ci right 4.096374e-01	k: 781075	n:1910000
KS ci ratio: 6.722683e-01	ci left: 1.189306e-05	ci right 2.426393e-05	k: 33	n:1910000
C16orf45   1910000 perm   1698 sec   (1125 perm/sec)   p_kst 1.727749e-05   p_cons 4.089398e-01   p_joint 1.204188e-05

Joint ci ratio: 8.001614e-01	ci left: 7.593779e-06	ci right 1.797458e-05	k: 23	n:1920000
Cons ci ratio: 3.401119e-03	ci left: 4.082435e-01	ci right 4.096349e-01	k: 785163	n:1920000
KS ci ratio: 6.722683e-01	ci left: 1.183111e-05	ci right 2.413756e-05	k: 33	n:1920000
C16orf45   1920000 perm   1715 sec   (1120 perm/sec)   p_kst 1.718750e-05   p_cons 4.089391e-01   p_joint 1.197917e-05

Joint ci ratio: 8.001615e-01	ci left: 7.554433e-06	ci right 1.788145e-05	k: 23	n:1930000
Cons ci ratio: 3.392418e-03	ci left: 4.082280e-01	ci right 4.096158e-01	k: 789219	n:1930000
KS ci ratio: 6.722684e-01	ci left: 1.176981e-05	ci right 2.401249e-05	k: 33	n:1930000
C16orf45   1930000 perm   1731 sec   (1115 perm/sec)   p_kst 1.709845e-05   p_cons 4.089218e-01   p_joint 1.191710e-05

Joint ci ratio: 8.001615e-01	ci left: 7.515492e-06	ci right 1.778927e-05	k: 23	n:1940000
Cons ci ratio: 3.383599e-03	ci left: 4.082390e-01	ci right 4.096231e-01	k: 793326	n:1940000
KS ci ratio: 6.722684e-01	ci left: 1.170914e-05	ci right 2.388872e-05	k: 33	n:1940000
C16orf45   1940000 perm   1747 sec   (1111 perm/sec)   p_kst 1.701031e-05   p_cons 4.089309e-01   p_joint 1.185567e-05

Joint ci ratio: 8.001615e-01	ci left: 7.476951e-06	ci right 1.769805e-05	k: 23	n:1950000
Cons ci ratio: 3.374770e-03	ci left: 4.082611e-01	ci right 4.096417e-01	k: 797455	n:1950000
KS ci ratio: 6.722684e-01	ci left: 1.164910e-05	ci right 2.376621e-05	k: 33	n:1950000
C16orf45   1950000 perm   1763 sec   (1106 perm/sec)   p_kst 1.692308e-05   p_cons 4.089513e-01   p_joint 1.179487e-05

Joint ci ratio: 8.001615e-01	ci left: 7.438803e-06	ci right 1.760775e-05	k: 23	n:1960000
Cons ci ratio: 3.366276e-03	ci left: 4.082448e-01	ci right 4.096218e-01	k: 801509	n:1960000
KS ci ratio: 6.722685e-01	ci left: 1.158966e-05	ci right 2.364495e-05	k: 33	n:1960000
C16orf45   1960000 perm   1780 sec   (1101 perm/sec)   p_kst 1.683673e-05   p_cons 4.089332e-01   p_joint 1.173469e-05

Joint ci ratio: 8.001616e-01	ci left: 7.401043e-06	ci right 1.751837e-05	k: 23	n:1970000
Cons ci ratio: 3.357486e-03	ci left: 4.082803e-01	ci right 4.096539e-01	k: 805665	n:1970000
KS ci ratio: 6.722685e-01	ci left: 1.153083e-05	ci right 2.352493e-05	k: 33	n:1970000
C16orf45   1970000 perm   1796 sec   (1097 perm/sec)   p_kst 1.675127e-05   p_cons 4.089670e-01   p_joint 1.167513e-05

Joint ci ratio: 8.001616e-01	ci left: 7.363664e-06	ci right 1.742990e-05	k: 23	n:1980000
Cons ci ratio: 3.349000e-03	ci left: 4.082817e-01	ci right 4.096519e-01	k: 809754	n:1980000
KS ci ratio: 6.722685e-01	ci left: 1.147259e-05	ci right 2.340612e-05	k: 33	n:1980000
C16orf45   1980000 perm   1813 sec   (1092 perm/sec)   p_kst 1.666667e-05   p_cons 4.089667e-01   p_joint 1.161616e-05

Joint ci ratio: 8.001616e-01	ci left: 7.326660e-06	ci right 1.734231e-05	k: 23	n:1990000
Cons ci ratio: 3.340674e-03	ci left: 4.082691e-01	ci right 4.096357e-01	k: 813815	n:1990000
KS ci ratio: 6.722685e-01	ci left: 1.141494e-05	ci right 2.328850e-05	k: 33	n:1990000
C16orf45   1990000 perm   1829 sec   (1088 perm/sec)   p_kst 1.658291e-05   p_cons 4.089523e-01   p_joint 1.155779e-05

Joint ci ratio: 8.001616e-01	ci left: 7.290027e-06	ci right 1.725560e-05	k: 23	n:2000000
Cons ci ratio: 3.332293e-03	ci left: 4.082735e-01	ci right 4.096367e-01	k: 817910	n:2000000
KS ci ratio: 6.722686e-01	ci left: 1.135787e-05	ci right 2.317206e-05	k: 33	n:2000000
C16orf45   2000000 perm   1846 sec   (1083 perm/sec)   p_kst 1.650000e-05   p_cons 4.089550e-01   p_joint 1.150000e-05

Joint ci ratio: 8.001617e-01	ci left: 7.253758e-06	ci right 1.716975e-05	k: 23	n:2010000
Cons ci ratio: 3.324286e-03	ci left: 4.082327e-01	ci right 4.095925e-01	k: 821914	n:2010000
KS ci ratio: 6.722686e-01	ci left: 1.130136e-05	ci right 2.305677e-05	k: 33	n:2010000
C16orf45   2010000 perm   1863 sec   (1079 perm/sec)   p_kst 1.641791e-05   p_cons 4.089124e-01   p_joint 1.144279e-05

Joint ci ratio: 8.001617e-01	ci left: 7.217848e-06	ci right 1.708475e-05	k: 23	n:2020000
Cons ci ratio: 3.316221e-03	ci left: 4.082090e-01	ci right 4.095655e-01	k: 825952	n:2020000
KS ci ratio: 6.722686e-01	ci left: 1.124541e-05	ci right 2.294263e-05	k: 33	n:2020000
C16orf45   2020000 perm   1879 sec   (1075 perm/sec)   p_kst 1.633663e-05   p_cons 4.088871e-01   p_joint 1.138614e-05

Joint ci ratio: 7.839950e-01	ci left: 7.575016e-06	ci right 1.759113e-05	k: 24	n:2030000
Cons ci ratio: 3.308120e-03	ci left: 4.081995e-01	ci right 4.095525e-01	k: 830018	n:2030000
KS ci ratio: 6.722687e-01	ci left: 1.119002e-05	ci right 2.282961e-05	k: 33	n:2030000
C16orf45   2030000 perm   1896 sec   (1071 perm/sec)   p_kst 1.625616e-05   p_cons 4.088759e-01   p_joint 1.182266e-05

Joint ci ratio: 7.839950e-01	ci left: 7.537883e-06	ci right 1.750490e-05	k: 24	n:2040000
Cons ci ratio: 3.300219e-03	ci left: 4.081694e-01	ci right 4.095191e-01	k: 834042	n:2040000
KS ci ratio: 6.625951e-01	ci left: 1.154218e-05	ci right 2.328992e-05	k: 34	n:2040000
C16orf45   2040000 perm   1913 sec   (1066 perm/sec)   p_kst 1.666667e-05   p_cons 4.088441e-01   p_joint 1.176471e-05

Joint ci ratio: 7.543992e-01	ci left: 8.284925e-06	ci right 1.858337e-05	k: 26	n:2050000
Cons ci ratio: 3.291998e-03	ci left: 4.081947e-01	ci right 4.095412e-01	k: 838179	n:2050000
KS ci ratio: 6.625951e-01	ci left: 1.148587e-05	ci right 2.317631e-05	k: 34	n:2050000
C16orf45   2050000 perm   1930 sec   (1062 perm/sec)   p_kst 1.658537e-05   p_cons 4.088678e-01   p_joint 1.268293e-05

Joint ci ratio: 7.408052e-01	ci left: 8.637478e-06	ci right 1.906964e-05	k: 27	n:2060000
Cons ci ratio: 3.284093e-03	ci left: 4.081824e-01	ci right 4.095256e-01	k: 842239	n:2060000
KS ci ratio: 6.625951e-01	ci left: 1.143012e-05	ci right 2.306380e-05	k: 34	n:2060000
C16orf45   2060000 perm   1948 sec   (1058 perm/sec)   p_kst 1.650485e-05   p_cons 4.088539e-01   p_joint 1.310680e-05

Joint ci ratio: 7.408052e-01	ci left: 8.595751e-06	ci right 1.897752e-05	k: 27	n:2070000
Cons ci ratio: 3.276015e-03	ci left: 4.082041e-01	ci right 4.095440e-01	k: 846369	n:2070000
KS ci ratio: 6.625952e-01	ci left: 1.137490e-05	ci right 2.295239e-05	k: 34	n:2070000
C16orf45   2070000 perm   1965 sec   (1053 perm/sec)   p_kst 1.642512e-05   p_cons 4.088739e-01   p_joint 1.304348e-05

Joint ci ratio: 7.279205e-01	ci left: 8.945113e-06	ci right 1.945561e-05	k: 28	n:2080000
Cons ci ratio: 3.268416e-03	ci left: 4.081635e-01	ci right 4.095002e-01	k: 850370	n:2080000
KS ci ratio: 6.533275e-01	ci left: 1.172060e-05	ci right 2.340210e-05	k: 35	n:2080000
C16orf45   2080000 perm   1982 sec   (1050 perm/sec)   p_kst 1.682692e-05   p_cons 4.088317e-01   p_joint 1.346154e-05

Joint ci ratio: 7.279205e-01	ci left: 8.902313e-06	ci right 1.936252e-05	k: 28	n:2090000
Cons ci ratio: 3.260562e-03	ci left: 4.081688e-01	ci right 4.095023e-01	k: 854466	n:2090000
KS ci ratio: 6.533276e-01	ci left: 1.166452e-05	ci right 2.329013e-05	k: 35	n:2090000
C16orf45   2090000 perm   1998 sec   (1046 perm/sec)   p_kst 1.674641e-05   p_cons 4.088354e-01   p_joint 1.339713e-05

Joint ci ratio: 7.279205e-01	ci left: 8.859921e-06	ci right 1.927032e-05	k: 28	n:2100000
Cons ci ratio: 3.252509e-03	ci left: 4.082121e-01	ci right 4.095424e-01	k: 858642	n:2100000
KS ci ratio: 6.533276e-01	ci left: 1.160897e-05	ci right 2.317922e-05	k: 35	n:2100000
C16orf45   2100000 perm   2015 sec   (1042 perm/sec)   p_kst 1.666667e-05   p_cons 4.088771e-01   p_joint 1.333333e-05

Joint ci ratio: 7.279206e-01	ci left: 8.817931e-06	ci right 1.917899e-05	k: 28	n:2110000
Cons ci ratio: 3.244773e-03	ci left: 4.082166e-01	ci right 4.095438e-01	k: 862737	n:2110000
KS ci ratio: 6.533276e-01	ci left: 1.155395e-05	ci right 2.306937e-05	k: 35	n:2110000
C16orf45   2110000 perm   2033 sec   (1038 perm/sec)   p_kst 1.658768e-05   p_cons 4.088801e-01   p_joint 1.327014e-05

Joint ci ratio: 7.156856e-01	ci left: 9.161224e-06	ci right 1.964562e-05	k: 29	n:2120000
Cons ci ratio: 3.237047e-03	ci left: 4.082277e-01	ci right 4.095518e-01	k: 866846	n:2120000
KS ci ratio: 6.444383e-01	ci left: 1.189340e-05	ci right 2.350897e-05	k: 36	n:2120000
C16orf45   2120000 perm   2050 sec   (1034 perm/sec)   p_kst 1.698113e-05   p_cons 4.088896e-01   p_joint 1.367925e-05

Joint ci ratio: 7.156856e-01	ci left: 9.118213e-06	ci right 1.955339e-05	k: 29	n:2130000
Cons ci ratio: 3.229590e-03	ci left: 4.082068e-01	ci right 4.095277e-01	k: 870887	n:2130000
KS ci ratio: 6.444383e-01	ci left: 1.183757e-05	ci right 2.339860e-05	k: 36	n:2130000
C16orf45   2130000 perm   2067 sec   (1030 perm/sec)   p_kst 1.690141e-05   p_cons 4.088671e-01   p_joint 1.361502e-05

Joint ci ratio: 7.156856e-01	ci left: 9.075605e-06	ci right 1.946202e-05	k: 29	n:2140000
Cons ci ratio: 3.222152e-03	ci left: 4.081907e-01	ci right 4.095086e-01	k: 874938	n:2140000
KS ci ratio: 6.444383e-01	ci left: 1.178225e-05	ci right 2.328926e-05	k: 36	n:2140000
C16orf45   2140000 perm   2084 sec   (1027 perm/sec)   p_kst 1.682243e-05   p_cons 4.088495e-01   p_joint 1.355140e-05

Joint ci ratio: 7.156856e-01	ci left: 9.033393e-06	ci right 1.937150e-05	k: 29	n:2150000
Cons ci ratio: 3.214701e-03	ci left: 4.081846e-01	ci right 4.094994e-01	k: 879010	n:2150000
KS ci ratio: 6.444383e-01	ci left: 1.172745e-05	ci right 2.318094e-05	k: 36	n:2150000
C16orf45   2150000 perm   2102 sec   (1023 perm/sec)   p_kst 1.674419e-05   p_cons 4.088419e-01   p_joint 1.348837e-05

Joint ci ratio: 7.156857e-01	ci left: 8.991571e-06	ci right 1.928181e-05	k: 29	n:2160000
Cons ci ratio: 3.207317e-03	ci left: 4.081762e-01	ci right 4.094879e-01	k: 883077	n:2160000
KS ci ratio: 6.444384e-01	ci left: 1.167315e-05	ci right 2.307362e-05	k: 36	n:2160000
C16orf45   2160000 perm   2120 sec   (1019 perm/sec)   p_kst 1.666667e-05   p_cons 4.088319e-01   p_joint 1.342593e-05

Joint ci ratio: 7.156857e-01	ci left: 8.950135e-06	ci right 1.919296e-05	k: 29	n:2170000
Cons ci ratio: 3.199855e-03	ci left: 4.081873e-01	ci right 4.094959e-01	k: 887186	n:2170000
KS ci ratio: 6.359023e-01	ci left: 1.200529e-05	ci right 2.350206e-05	k: 37	n:2170000
C16orf45   2170000 perm   2138 sec   (1015 perm/sec)   p_kst 1.705069e-05   p_cons 4.088415e-01   p_joint 1.336406e-05

Joint ci ratio: 7.156857e-01	ci left: 8.909080e-06	ci right 1.910492e-05	k: 29	n:2180000
Cons ci ratio: 3.192421e-03	ci left: 4.082019e-01	ci right 4.095075e-01	k: 891303	n:2180000
KS ci ratio: 6.359023e-01	ci left: 1.195022e-05	ci right 2.339425e-05	k: 37	n:2180000
C16orf45   2180000 perm   2156 sec   (1011 perm/sec)   p_kst 1.697248e-05   p_cons 4.088546e-01   p_joint 1.330275e-05

Joint ci ratio: 7.156857e-01	ci left: 8.868399e-06	ci right 1.901768e-05	k: 29	n:2190000
Cons ci ratio: 3.185255e-03	ci left: 4.081835e-01	ci right 4.094862e-01	k: 895348	n:2190000
KS ci ratio: 6.359023e-01	ci left: 1.189565e-05	ci right 2.328743e-05	k: 37	n:2190000
C16orf45   2190000 perm   2175 sec   (1007 perm/sec)   p_kst 1.689498e-05   p_cons 4.088347e-01   p_joint 1.324201e-05

Joint ci ratio: 7.156858e-01	ci left: 8.828088e-06	ci right 1.893124e-05	k: 29	n:2200000
Cons ci ratio: 3.178131e-03	ci left: 4.081662e-01	ci right 4.094659e-01	k: 899395	n:2200000
KS ci ratio: 6.359023e-01	ci left: 1.184158e-05	ci right 2.318157e-05	k: 37	n:2200000
C16orf45   2200000 perm   2193 sec   (1003 perm/sec)   p_kst 1.681818e-05   p_cons 4.088159e-01   p_joint 1.318182e-05

Joint ci ratio: 7.156858e-01	ci left: 8.788142e-06	ci right 1.884557e-05	k: 29	n:2210000
Cons ci ratio: 3.171037e-03	ci left: 4.081517e-01	ci right 4.094485e-01	k: 903448	n:2210000
KS ci ratio: 6.276967e-01	ci left: 1.216793e-05	ci right 2.360082e-05	k: 38	n:2210000
C16orf45   2210000 perm   2211 sec   (1000 perm/sec)   p_kst 1.719457e-05   p_cons 4.088000e-01   p_joint 1.312217e-05

Joint ci ratio: 7.040477e-01	ci left: 9.117529e-06	ci right 1.929133e-05	k: 30	n:2220000
Cons ci ratio: 3.164088e-03	ci left: 4.081226e-01	ci right 4.094164e-01	k: 907468	n:2220000
KS ci ratio: 6.276967e-01	ci left: 1.211312e-05	ci right 2.349451e-05	k: 38	n:2220000
C16orf45   2220000 perm   2230 sec   (996 perm/sec)   p_kst 1.711712e-05   p_cons 4.087694e-01   p_joint 1.351351e-05

Joint ci ratio: 7.040477e-01	ci left: 9.076643e-06	ci right 1.920482e-05	k: 30	n:2230000
Cons ci ratio: 3.157005e-03	ci left: 4.081210e-01	ci right 4.094119e-01	k: 911549	n:2230000
KS ci ratio: 6.276967e-01	ci left: 1.205880e-05	ci right 2.338915e-05	k: 38	n:2230000
C16orf45   2230000 perm   2248 sec   (992 perm/sec)   p_kst 1.704036e-05   p_cons 4.087664e-01   p_joint 1.345291e-05

Joint ci ratio: 6.929595e-01	ci left: 9.403142e-06	ci right 1.964370e-05	k: 31	n:2240000
Cons ci ratio: 3.149865e-03	ci left: 4.081356e-01	ci right 4.094236e-01	k: 915666	n:2240000
KS ci ratio: 6.276968e-01	ci left: 1.200497e-05	ci right 2.328473e-05	k: 38	n:2240000
C16orf45   2240000 perm   2266 sec   (988 perm/sec)   p_kst 1.696429e-05   p_cons 4.087795e-01   p_joint 1.383929e-05

Joint ci ratio: 6.929596e-01	ci left: 9.361350e-06	ci right 1.955640e-05	k: 31	n:2250000
Cons ci ratio: 3.143204e-03	ci left: 4.080838e-01	ci right 4.093689e-01	k: 919634	n:2250000
KS ci ratio: 6.276968e-01	ci left: 1.195161e-05	ci right 2.318125e-05	k: 38	n:2250000
C16orf45   2250000 perm   2285 sec   (985 perm/sec)   p_kst 1.688889e-05   p_cons 4.087262e-01   p_joint 1.377778e-05

Joint ci ratio: 6.929596e-01	ci left: 9.319928e-06	ci right 1.946987e-05	k: 31	n:2260000
Cons ci ratio: 3.136111e-03	ci left: 4.081054e-01	ci right 4.093877e-01	k: 923767	n:2260000
KS ci ratio: 6.276968e-01	ci left: 1.189873e-05	ci right 2.307868e-05	k: 38	n:2260000
C16orf45   2260000 perm   2304 sec   (981 perm/sec)   p_kst 1.681416e-05   p_cons 4.087465e-01   p_joint 1.371681e-05

Joint ci ratio: 6.929596e-01	ci left: 9.278871e-06	ci right 1.938410e-05	k: 31	n:2270000
Cons ci ratio: 3.129262e-03	ci left: 4.080965e-01	ci right 4.093760e-01	k: 927831	n:2270000
KS ci ratio: 6.276968e-01	ci left: 1.184631e-05	ci right 2.297701e-05	k: 38	n:2270000
C16orf45   2270000 perm   2323 sec   (977 perm/sec)   p_kst 1.674009e-05   p_cons 4.087361e-01   p_joint 1.365639e-05

Joint ci ratio: 6.929596e-01	ci left: 9.238174e-06	ci right 1.929908e-05	k: 31	n:2280000
Cons ci ratio: 3.122444e-03	ci left: 4.080899e-01	ci right 4.093665e-01	k: 931900	n:2280000
KS ci ratio: 6.276969e-01	ci left: 1.179435e-05	ci right 2.287623e-05	k: 38	n:2280000
C16orf45   2280000 perm   2343 sec   (973 perm/sec)   p_kst 1.666667e-05   p_cons 4.087281e-01   p_joint 1.359649e-05

Joint ci ratio: 6.929597e-01	ci left: 9.197833e-06	ci right 1.921480e-05	k: 31	n:2290000
Cons ci ratio: 3.115547e-03	ci left: 4.081025e-01	ci right 4.093763e-01	k: 936013	n:2290000
KS ci ratio: 6.276969e-01	ci left: 1.174285e-05	ci right 2.277634e-05	k: 38	n:2290000
C16orf45   2290000 perm   2362 sec   (970 perm/sec)   p_kst 1.659389e-05   p_cons 4.087393e-01   p_joint 1.353712e-05

Joint ci ratio: 6.929597e-01	ci left: 9.157842e-06	ci right 1.913126e-05	k: 31	n:2300000
Cons ci ratio: 3.108765e-03	ci left: 4.081041e-01	ci right 4.093752e-01	k: 940101	n:2300000
KS ci ratio: 6.276969e-01	ci left: 1.169179e-05	ci right 2.267731e-05	k: 38	n:2300000
C16orf45   2300000 perm   2381 sec   (966 perm/sec)   p_kst 1.652174e-05   p_cons 4.087396e-01   p_joint 1.347826e-05

Joint ci ratio: 6.929597e-01	ci left: 9.118198e-06	ci right 1.904844e-05	k: 31	n:2310000
Cons ci ratio: 3.101949e-03	ci left: 4.081179e-01	ci right 4.093862e-01	k: 944217	n:2310000
KS ci ratio: 6.276969e-01	ci left: 1.164118e-05	ci right 2.257914e-05	k: 38	n:2310000
C16orf45   2310000 perm   2400 sec   (962 perm/sec)   p_kst 1.645022e-05   p_cons 4.087519e-01   p_joint 1.341991e-05

Joint ci ratio: 6.929597e-01	ci left: 9.078895e-06	ci right 1.896634e-05	k: 31	n:2320000
Cons ci ratio: 3.095396e-03	ci left: 4.080975e-01	ci right 4.093631e-01	k: 948254	n:2320000
KS ci ratio: 6.276970e-01	ci left: 1.159100e-05	ci right 2.248181e-05	k: 38	n:2320000
C16orf45   2320000 perm   2420 sec   (959 perm/sec)   p_kst 1.637931e-05   p_cons 4.087302e-01   p_joint 1.336207e-05

Joint ci ratio: 6.929597e-01	ci left: 9.039930e-06	ci right 1.888494e-05	k: 31	n:2330000
Cons ci ratio: 3.088720e-03	ci left: 4.081030e-01	ci right 4.093659e-01	k: 952351	n:2330000
KS ci ratio: 6.276970e-01	ci left: 1.154125e-05	ci right 2.238533e-05	k: 38	n:2330000
C16orf45   2330000 perm   2440 sec   (955 perm/sec)   p_kst 1.630901e-05   p_cons 4.087343e-01   p_joint 1.330472e-05

Joint ci ratio: 6.929598e-01	ci left: 9.001298e-06	ci right 1.880423e-05	k: 31	n:2340000
Cons ci ratio: 3.082155e-03	ci left: 4.080978e-01	ci right 4.093580e-01	k: 956423	n:2340000
KS ci ratio: 6.276970e-01	ci left: 1.149193e-05	ci right 2.228966e-05	k: 38	n:2340000
C16orf45   2340000 perm   2459 sec   (952 perm/sec)   p_kst 1.623932e-05   p_cons 4.087278e-01   p_joint 1.324786e-05

Joint ci ratio: 6.823795e-01	ci left: 9.314051e-06	ci right 1.922312e-05	k: 32	n:2350000
Cons ci ratio: 3.075661e-03	ci left: 4.080880e-01	ci right 4.093454e-01	k: 960484	n:2350000
KS ci ratio: 6.198010e-01	ci left: 1.180122e-05	ci right 2.268686e-05	k: 39	n:2350000
C16orf45   2350000 perm   2478 sec   (948 perm/sec)   p_kst 1.659574e-05   p_cons 4.087166e-01   p_joint 1.361702e-05

Joint ci ratio: 6.823795e-01	ci left: 9.274584e-06	ci right 1.914166e-05	k: 32	n:2360000
Cons ci ratio: 3.069219e-03	ci left: 4.080765e-01	ci right 4.093313e-01	k: 964541	n:2360000
KS ci ratio: 6.198010e-01	ci left: 1.175122e-05	ci right 2.259073e-05	k: 39	n:2360000
C16orf45   2360000 perm   2497 sec   (945 perm/sec)   p_kst 1.652542e-05   p_cons 4.087038e-01   p_joint 1.355932e-05

Joint ci ratio: 6.823795e-01	ci left: 9.235451e-06	ci right 1.906090e-05	k: 32	n:2370000
Cons ci ratio: 3.062962e-03	ci left: 4.080424e-01	ci right 4.092945e-01	k: 968544	n:2370000
KS ci ratio: 6.198011e-01	ci left: 1.170163e-05	ci right 2.249541e-05	k: 39	n:2370000
C16orf45   2370000 perm   2517 sec   (942 perm/sec)   p_kst 1.645570e-05   p_cons 4.086684e-01   p_joint 1.350211e-05

Joint ci ratio: 6.823795e-01	ci left: 9.196646e-06	ci right 1.898081e-05	k: 32	n:2380000
Cons ci ratio: 3.056671e-03	ci left: 4.080199e-01	ci right 4.092694e-01	k: 972574	n:2380000
KS ci ratio: 6.198011e-01	ci left: 1.165247e-05	ci right 2.240089e-05	k: 39	n:2380000
C16orf45   2380000 perm   2536 sec   (939 perm/sec)   p_kst 1.638655e-05   p_cons 4.086445e-01   p_joint 1.344538e-05

Joint ci ratio: 6.823796e-01	ci left: 9.158167e-06	ci right 1.890139e-05	k: 32	n:2390000
Cons ci ratio: 3.050416e-03	ci left: 4.079980e-01	ci right 4.092449e-01	k: 976605	n:2390000
KS ci ratio: 6.198011e-01	ci left: 1.160371e-05	ci right 2.230716e-05	k: 39	n:2390000
C16orf45   2390000 perm   2555 sec   (935 perm/sec)   p_kst 1.631799e-05   p_cons 4.086213e-01   p_joint 1.338912e-05

Joint ci ratio: 6.823796e-01	ci left: 9.120007e-06	ci right 1.882264e-05	k: 32	n:2400000
Cons ci ratio: 3.044005e-03	ci left: 4.080071e-01	ci right 4.092514e-01	k: 980710	n:2400000
KS ci ratio: 6.198011e-01	ci left: 1.155536e-05	ci right 2.221422e-05	k: 39	n:2400000
C16orf45   2400000 perm   2575 sec   (932 perm/sec)   p_kst 1.625000e-05   p_cons 4.086292e-01   p_joint 1.333333e-05

Joint ci ratio: 6.823796e-01	ci left: 9.082165e-06	ci right 1.874453e-05	k: 32	n:2410000
Cons ci ratio: 3.037720e-03	ci left: 4.080025e-01	ci right 4.092442e-01	k: 984782	n:2410000
KS ci ratio: 6.198011e-01	ci left: 1.150742e-05	ci right 2.212204e-05	k: 39	n:2410000
C16orf45   2410000 perm   2595 sec   (929 perm/sec)   p_kst 1.618257e-05   p_cons 4.086232e-01   p_joint 1.327801e-05

Joint ci ratio: 6.823796e-01	ci left: 9.044635e-06	ci right 1.866708e-05	k: 32	n:2420000
Cons ci ratio: 3.031490e-03	ci left: 4.079954e-01	ci right 4.092345e-01	k: 988848	n:2420000
KS ci ratio: 6.198012e-01	ci left: 1.145986e-05	ci right 2.203063e-05	k: 39	n:2420000
C16orf45   2420000 perm   2615 sec   (926 perm/sec)   p_kst 1.611570e-05   p_cons 4.086149e-01   p_joint 1.322314e-05

Joint ci ratio: 6.823796e-01	ci left: 9.007415e-06	ci right 1.859026e-05	k: 32	n:2430000
Cons ci ratio: 3.025254e-03	ci left: 4.079954e-01	ci right 4.092320e-01	k: 992931	n:2430000
KS ci ratio: 6.198012e-01	ci left: 1.141270e-05	ci right 2.193997e-05	k: 39	n:2430000
C16orf45   2430000 perm   2635 sec   (922 perm/sec)   p_kst 1.604938e-05   p_cons 4.086136e-01   p_joint 1.316872e-05

Joint ci ratio: 6.823797e-01	ci left: 8.970499e-06	ci right 1.851407e-05	k: 32	n:2440000
Cons ci ratio: 3.019138e-03	ci left: 4.079823e-01	ci right 4.092163e-01	k: 996982	n:2440000
KS ci ratio: 6.121959e-01	ci left: 1.171174e-05	ci right 2.232315e-05	k: 40	n:2440000
C16orf45   2440000 perm   2654 sec   (919 perm/sec)   p_kst 1.639344e-05   p_cons 4.085992e-01   p_joint 1.311475e-05

Joint ci ratio: 6.823797e-01	ci left: 8.933884e-06	ci right 1.843850e-05	k: 32	n:2450000
Cons ci ratio: 3.013121e-03	ci left: 4.079595e-01	ci right 4.091909e-01	k: 1001009	n:2450000
KS ci ratio: 6.048638e-01	ci left: 1.200913e-05	ci right 2.270243e-05	k: 41	n:2450000
C16orf45   2450000 perm   2674 sec   (916 perm/sec)   p_kst 1.673469e-05   p_cons 4.085751e-01   p_joint 1.306122e-05

Joint ci ratio: 6.823797e-01	ci left: 8.897568e-06	ci right 1.836355e-05	k: 32	n:2460000
Cons ci ratio: 3.006962e-03	ci left: 4.079653e-01	ci right 4.091943e-01	k: 1005106	n:2460000
KS ci ratio: 6.048638e-01	ci left: 1.196031e-05	ci right 2.261015e-05	k: 41	n:2460000
C16orf45   2460000 perm   2693 sec   (913 perm/sec)   p_kst 1.666667e-05   p_cons 4.085797e-01   p_joint 1.300813e-05

Joint ci ratio: 6.823797e-01	ci left: 8.861545e-06	ci right 1.828920e-05	k: 32	n:2470000
Cons ci ratio: 3.000748e-03	ci left: 4.079861e-01	ci right 4.092125e-01	k: 1009240	n:2470000
KS ci ratio: 6.048639e-01	ci left: 1.191189e-05	ci right 2.251861e-05	k: 41	n:2470000
C16orf45   2470000 perm   2713 sec   (910 perm/sec)   p_kst 1.659919e-05   p_cons 4.085992e-01   p_joint 1.295547e-05

Joint ci ratio: 6.823797e-01	ci left: 8.825813e-06	ci right 1.821546e-05	k: 32	n:2480000
Cons ci ratio: 2.994802e-03	ci left: 4.079696e-01	ci right 4.091936e-01	k: 1013282	n:2480000
KS ci ratio: 6.048639e-01	ci left: 1.186386e-05	ci right 2.242781e-05	k: 41	n:2480000
C16orf45   2480000 perm   2733 sec   (907 perm/sec)   p_kst 1.653226e-05   p_cons 4.085815e-01   p_joint 1.290323e-05

Joint ci ratio: 6.823798e-01	ci left: 8.790368e-06	ci right 1.814230e-05	k: 32	n:2490000
Cons ci ratio: 2.988739e-03	ci left: 4.079777e-01	ci right 4.091992e-01	k: 1017385	n:2490000
KS ci ratio: 6.048639e-01	ci left: 1.181621e-05	ci right 2.233774e-05	k: 41	n:2490000
C16orf45   2490000 perm   2753 sec   (904 perm/sec)   p_kst 1.646586e-05   p_cons 4.085884e-01   p_joint 1.285141e-05

Joint ci ratio: 6.823798e-01	ci left: 8.755206e-06	ci right 1.806973e-05	k: 32	n:2500000
Cons ci ratio: 2.982615e-03	ci left: 4.080018e-01	ci right 4.092209e-01	k: 1021528	n:2500000
KS ci ratio: 6.048639e-01	ci left: 1.176895e-05	ci right 2.224839e-05	k: 41	n:2500000
C16orf45   2500000 perm   2773 sec   (902 perm/sec)   p_kst 1.640000e-05   p_cons 4.086112e-01   p_joint 1.280000e-05

Joint ci ratio: 6.823798e-01	ci left: 8.720325e-06	ci right 1.799774e-05	k: 32	n:2510000
Cons ci ratio: 2.976704e-03	ci left: 4.079969e-01	ci right 4.092136e-01	k: 1025599	n:2510000
KS ci ratio: 6.048640e-01	ci left: 1.172206e-05	ci right 2.215975e-05	k: 41	n:2510000
C16orf45   2510000 perm   2793 sec   (899 perm/sec)   p_kst 1.633466e-05   p_cons 4.086052e-01   p_joint 1.274900e-05

Joint ci ratio: 6.823798e-01	ci left: 8.685721e-06	ci right 1.792632e-05	k: 32	n:2520000
Cons ci ratio: 2.970688e-03	ci left: 4.080152e-01	ci right 4.092295e-01	k: 1029728	n:2520000
KS ci ratio: 6.048640e-01	ci left: 1.167554e-05	ci right 2.207181e-05	k: 41	n:2520000
C16orf45   2520000 perm   2813 sec   (896 perm/sec)   p_kst 1.626984e-05   p_cons 4.086222e-01   p_joint 1.269841e-05

Joint ci ratio: 6.823798e-01	ci left: 8.651390e-06	ci right 1.785547e-05	k: 32	n:2530000
Cons ci ratio: 2.964661e-03	ci left: 4.080408e-01	ci right 4.092527e-01	k: 1033876	n:2530000
KS ci ratio: 6.048640e-01	ci left: 1.162940e-05	ci right 2.198457e-05	k: 41	n:2530000
C16orf45   2530000 perm   2834 sec   (893 perm/sec)   p_kst 1.620553e-05   p_cons 4.086466e-01   p_joint 1.264822e-05

Joint ci ratio: 6.823798e-01	ci left: 8.617329e-06	ci right 1.778517e-05	k: 32	n:2540000
Cons ci ratio: 2.958907e-03	ci left: 4.080276e-01	ci right 4.092371e-01	k: 1037926	n:2540000
KS ci ratio: 6.048640e-01	ci left: 1.158361e-05	ci right 2.189802e-05	k: 41	n:2540000
C16orf45   2540000 perm   2854 sec   (890 perm/sec)   p_kst 1.614173e-05   p_cons 4.086323e-01   p_joint 1.259843e-05

Joint ci ratio: 6.823799e-01	ci left: 8.583535e-06	ci right 1.771543e-05	k: 32	n:2550000
Cons ci ratio: 2.953086e-03	ci left: 4.080311e-01	ci right 4.092382e-01	k: 1042018	n:2550000
KS ci ratio: 6.048640e-01	ci left: 1.153818e-05	ci right 2.181215e-05	k: 41	n:2550000
C16orf45   2550000 perm   2876 sec   (887 perm/sec)   p_kst 1.607843e-05   p_cons 4.086345e-01   p_joint 1.254902e-05

Joint ci ratio: 6.823799e-01	ci left: 8.550006e-06	ci right 1.764622e-05	k: 32	n:2560000
Cons ci ratio: 2.947390e-03	ci left: 4.080196e-01	ci right 4.092243e-01	k: 1046072	n:2560000
KS ci ratio: 6.048641e-01	ci left: 1.149311e-05	ci right 2.172694e-05	k: 41	n:2560000
C16orf45   2560000 perm   2897 sec   (884 perm/sec)   p_kst 1.601563e-05   p_cons 4.086219e-01   p_joint 1.250000e-05

Joint ci ratio: 6.823799e-01	ci left: 8.516737e-06	ci right 1.757756e-05	k: 32	n:2570000
Cons ci ratio: 2.941750e-03	ci left: 4.080044e-01	ci right 4.092067e-01	k: 1050116	n:2570000
KS ci ratio: 6.048641e-01	ci left: 1.144839e-05	ci right 2.164240e-05	k: 41	n:2570000
C16orf45   2570000 perm   2918 sec   (881 perm/sec)   p_kst 1.595331e-05   p_cons 4.086054e-01   p_joint 1.245136e-05

Joint ci ratio: 6.823799e-01	ci left: 8.483727e-06	ci right 1.750943e-05	k: 32	n:2580000
Cons ci ratio: 2.936175e-03	ci left: 4.079838e-01	ci right 4.091838e-01	k: 1054146	n:2580000
KS ci ratio: 6.048641e-01	ci left: 1.140402e-05	ci right 2.155852e-05	k: 41	n:2580000
C16orf45   2580000 perm   2940 sec   (878 perm/sec)   p_kst 1.589147e-05   p_cons 4.085837e-01   p_joint 1.240310e-05

Joint ci ratio: 6.823799e-01	ci left: 8.450971e-06	ci right 1.744183e-05	k: 32	n:2590000
Cons ci ratio: 2.930497e-03	ci left: 4.079858e-01	ci right 4.091835e-01	k: 1058234	n:2590000
KS ci ratio: 6.048641e-01	ci left: 1.135999e-05	ci right 2.147528e-05	k: 41	n:2590000
C16orf45   2590000 perm   2961 sec   (875 perm/sec)   p_kst 1.583012e-05   p_cons 4.085846e-01   p_joint 1.235521e-05

Joint ci ratio: 7.279215e-01	ci left: 7.156087e-06	ci right 1.556450e-05	k: 28	n:2600000
Cons ci ratio: 2.925039e-03	ci left: 4.079566e-01	ci right 4.091520e-01	k: 1062241	n:2600000
KS ci ratio: 6.048641e-01	ci left: 1.131630e-05	ci right 2.139268e-05	k: 41	n:2600000
C16orf45   2600000 perm   2982 sec   (872 perm/sec)   p_kst 1.576923e-05   p_cons 4.085542e-01   p_joint 1.076923e-05

Joint ci ratio: 7.279215e-01	ci left: 7.128669e-06	ci right 1.550487e-05	k: 28	n:2610000
Cons ci ratio: 2.919499e-03	ci left: 4.079465e-01	ci right 4.091396e-01	k: 1066297	n:2610000
KS ci ratio: 6.048641e-01	ci left: 1.127294e-05	ci right 2.131072e-05	k: 41	n:2610000
C16orf45   2610000 perm   3003 sec   (869 perm/sec)   p_kst 1.570881e-05   p_cons 4.085429e-01   p_joint 1.072797e-05

Joint ci ratio: 7.279216e-01	ci left: 7.101460e-06	ci right 1.544569e-05	k: 28	n:2620000
Cons ci ratio: 2.913937e-03	ci left: 4.079451e-01	ci right 4.091360e-01	k: 1070376	n:2620000
KS ci ratio: 6.048642e-01	ci left: 1.122991e-05	ci right 2.122938e-05	k: 41	n:2620000
C16orf45   2620000 perm   3024 sec   (866 perm/sec)   p_kst 1.564885e-05   p_cons 4.085405e-01   p_joint 1.068702e-05

Joint ci ratio: 7.279216e-01	ci left: 7.074459e-06	ci right 1.538696e-05	k: 28	n:2630000
Cons ci ratio: 2.908390e-03	ci left: 4.079465e-01	ci right 4.091351e-01	k: 1074462	n:2630000
KS ci ratio: 6.048642e-01	ci left: 1.118721e-05	ci right 2.114866e-05	k: 41	n:2630000
C16orf45   2630000 perm   3045 sec   (864 perm/sec)   p_kst 1.558935e-05   p_cons 4.085407e-01   p_joint 1.064639e-05

Joint ci ratio: 7.279216e-01	ci left: 7.047661e-06	ci right 1.532867e-05	k: 28	n:2640000
Cons ci ratio: 2.902691e-03	ci left: 4.079785e-01	ci right 4.091648e-01	k: 1078629	n:2640000
KS ci ratio: 6.048642e-01	ci left: 1.114484e-05	ci right 2.106855e-05	k: 41	n:2640000
C16orf45   2640000 perm   3065 sec   (861 perm/sec)   p_kst 1.553030e-05   p_cons 4.085716e-01   p_joint 1.060606e-05

Joint ci ratio: 7.279216e-01	ci left: 7.021066e-06	ci right 1.527083e-05	k: 28	n:2650000
Cons ci ratio: 2.897036e-03	ci left: 4.080084e-01	ci right 4.091925e-01	k: 1082791	n:2650000
KS ci ratio: 6.048642e-01	ci left: 1.110278e-05	ci right 2.098905e-05	k: 41	n:2650000
C16orf45   2650000 perm   3087 sec   (858 perm/sec)   p_kst 1.547170e-05   p_cons 4.086004e-01   p_joint 1.056604e-05

Joint ci ratio: 7.279216e-01	ci left: 6.994671e-06	ci right 1.521342e-05	k: 28	n:2660000
Cons ci ratio: 2.891503e-03	ci left: 4.080235e-01	ci right 4.092053e-01	k: 1086914	n:2660000
KS ci ratio: 6.048642e-01	ci left: 1.106104e-05	ci right 2.091014e-05	k: 41	n:2660000
C16orf45   2660000 perm   3109 sec   (856 perm/sec)   p_kst 1.541353e-05   p_cons 4.086143e-01   p_joint 1.052632e-05

Joint ci ratio: 7.279216e-01	ci left: 6.968474e-06	ci right 1.515644e-05	k: 28	n:2670000
Cons ci ratio: 2.886159e-03	ci left: 4.080118e-01	ci right 4.091914e-01	k: 1090966	n:2670000
KS ci ratio: 6.048643e-01	ci left: 1.101961e-05	ci right 2.083183e-05	k: 41	n:2670000
C16orf45   2670000 perm   3131 sec   (853 perm/sec)   p_kst 1.535581e-05   p_cons 4.086015e-01   p_joint 1.048689e-05

Joint ci ratio: 7.279217e-01	ci left: 6.942472e-06	ci right 1.509989e-05	k: 28	n:2680000
Cons ci ratio: 2.880841e-03	ci left: 4.080009e-01	ci right 4.091784e-01	k: 1095020	n:2680000
KS ci ratio: 6.048643e-01	ci left: 1.097849e-05	ci right 2.075410e-05	k: 41	n:2680000
C16orf45   2680000 perm   3153 sec   (850 perm/sec)   p_kst 1.529851e-05   p_cons 4.085896e-01   p_joint 1.044776e-05

Joint ci ratio: 7.279217e-01	ci left: 6.916664e-06	ci right 1.504376e-05	k: 28	n:2690000
Cons ci ratio: 2.875498e-03	ci left: 4.079991e-01	ci right 4.091743e-01	k: 1099098	n:2690000
KS ci ratio: 6.048643e-01	ci left: 1.093768e-05	ci right 2.067694e-05	k: 41	n:2690000
C16orf45   2690000 perm   3175 sec   (847 perm/sec)   p_kst 1.524164e-05   p_cons 4.085866e-01   p_joint 1.040892e-05

Joint ci ratio: 7.279217e-01	ci left: 6.891047e-06	ci right 1.498804e-05	k: 28	n:2700000
Cons ci ratio: 2.870067e-03	ci left: 4.080173e-01	ci right 4.091903e-01	k: 1103230	n:2700000
KS ci ratio: 6.048643e-01	ci left: 1.089717e-05	ci right 2.060036e-05	k: 41	n:2700000
C16orf45   2700000 perm   3197 sec   (845 perm/sec)   p_kst 1.518519e-05   p_cons 4.086037e-01   p_joint 1.037037e-05

Joint ci ratio: 7.279217e-01	ci left: 6.865618e-06	ci right 1.493273e-05	k: 28	n:2710000
Cons ci ratio: 2.864588e-03	ci left: 4.080486e-01	ci right 4.092195e-01	k: 1107398	n:2710000
KS ci ratio: 6.048643e-01	ci left: 1.085696e-05	ci right 2.052435e-05	k: 41	n:2710000
C16orf45   2710000 perm   3219 sec   (842 perm/sec)   p_kst 1.512915e-05   p_cons 4.086339e-01   p_joint 1.033210e-05

Joint ci ratio: 7.279217e-01	ci left: 6.840377e-06	ci right 1.487783e-05	k: 28	n:2720000
Cons ci ratio: 2.859252e-03	ci left: 4.080606e-01	ci right 4.092293e-01	k: 1111514	n:2720000
KS ci ratio: 6.048644e-01	ci left: 1.081705e-05	ci right 2.044889e-05	k: 41	n:2720000
C16orf45   2720000 perm   3242 sec   (839 perm/sec)   p_kst 1.507353e-05   p_cons 4.086449e-01   p_joint 1.029412e-05

Joint ci ratio: 7.279217e-01	ci left: 6.815321e-06	ci right 1.482333e-05	k: 28	n:2730000
Cons ci ratio: 2.854003e-03	ci left: 4.080629e-01	ci right 4.092296e-01	k: 1115604	n:2730000
KS ci ratio: 6.048644e-01	ci left: 1.077742e-05	ci right 2.037399e-05	k: 41	n:2730000
C16orf45   2730000 perm   3264 sec   (836 perm/sec)   p_kst 1.501832e-05   p_cons 4.086462e-01   p_joint 1.025641e-05

Joint ci ratio: 7.279217e-01	ci left: 6.790447e-06	ci right 1.476923e-05	k: 28	n:2740000
Cons ci ratio: 2.849013e-03	ci left: 4.080263e-01	ci right 4.091907e-01	k: 1119587	n:2740000
KS ci ratio: 6.048644e-01	ci left: 1.073809e-05	ci right 2.029963e-05	k: 41	n:2740000
C16orf45   2740000 perm   3285 sec   (834 perm/sec)   p_kst 1.496350e-05   p_cons 4.086084e-01   p_joint 1.021898e-05

Joint ci ratio: 7.279218e-01	ci left: 6.765755e-06	ci right 1.471553e-05	k: 28	n:2750000
Cons ci ratio: 2.843824e-03	ci left: 4.080280e-01	ci right 4.091904e-01	k: 1123675	n:2750000
KS ci ratio: 5.977896e-01	ci left: 1.100726e-05	ci right 2.064424e-05	k: 42	n:2750000
C16orf45   2750000 perm   3308 sec   (831 perm/sec)   p_kst 1.527273e-05   p_cons 4.086091e-01   p_joint 1.018182e-05

Joint ci ratio: 7.279218e-01	ci left: 6.741241e-06	ci right 1.466221e-05	k: 28	n:2760000
Cons ci ratio: 2.838591e-03	ci left: 4.080421e-01	ci right 4.092023e-01	k: 1127797	n:2760000
KS ci ratio: 5.977896e-01	ci left: 1.096738e-05	ci right 2.056944e-05	k: 42	n:2760000
C16orf45   2760000 perm   3331 sec   (829 perm/sec)   p_kst 1.521739e-05   p_cons 4.086221e-01   p_joint 1.014493e-05

Joint ci ratio: 7.279218e-01	ci left: 6.716904e-06	ci right 1.460928e-05	k: 28	n:2770000
Cons ci ratio: 2.833220e-03	ci left: 4.080845e-01	ci right 4.092427e-01	k: 1131998	n:2770000
KS ci ratio: 5.977896e-01	ci left: 1.092778e-05	ci right 2.049518e-05	k: 42	n:2770000
C16orf45   2770000 perm   3353 sec   (826 perm/sec)   p_kst 1.516245e-05   p_cons 4.086635e-01   p_joint 1.010830e-05

Joint ci ratio: 7.279218e-01	ci left: 6.692743e-06	ci right 1.455673e-05	k: 28	n:2780000
Cons ci ratio: 2.828173e-03	ci left: 4.080764e-01	ci right 4.092325e-01	k: 1136059	n:2780000
KS ci ratio: 5.977897e-01	ci left: 1.088848e-05	ci right 2.042146e-05	k: 42	n:2780000
C16orf45   2780000 perm   3376 sec   (824 perm/sec)   p_kst 1.510791e-05   p_cons 4.086543e-01   p_joint 1.007194e-05

Joint ci ratio: 7.279218e-01	ci left: 6.668754e-06	ci right 1.450455e-05	k: 28	n:2790000
Cons ci ratio: 2.823190e-03	ci left: 4.080622e-01	ci right 4.092162e-01	k: 1140103	n:2790000
KS ci ratio: 5.977897e-01	ci left: 1.084945e-05	ci right 2.034826e-05	k: 42	n:2790000
C16orf45   2790000 perm   3398 sec   (821 perm/sec)   p_kst 1.505376e-05   p_cons 4.086391e-01   p_joint 1.003584e-05

Joint ci ratio: 7.279218e-01	ci left: 6.644937e-06	ci right 1.445275e-05	k: 28	n:2800000
Cons ci ratio: 2.818070e-03	ci left: 4.080759e-01	ci right 4.092279e-01	k: 1144225	n:2800000
KS ci ratio: 5.977897e-01	ci left: 1.081070e-05	ci right 2.027559e-05	k: 42	n:2800000
C16orf45   2800000 perm   3421 sec   (818 perm/sec)   p_kst 1.500000e-05   p_cons 4.086518e-01   p_joint 1.000000e-05

Joint ci ratio: 7.279218e-01	ci left: 6.621290e-06	ci right 1.440132e-05	k: 28	n:2810000
Cons ci ratio: 2.813139e-03	ci left: 4.080618e-01	ci right 4.092117e-01	k: 1148269	n:2810000
KS ci ratio: 5.977897e-01	ci left: 1.077223e-05	ci right 2.020343e-05	k: 42	n:2810000
C16orf45   2810000 perm   3444 sec   (816 perm/sec)   p_kst 1.494662e-05   p_cons 4.086367e-01   p_joint 9.964413e-06

Joint ci ratio: 7.279219e-01	ci left: 6.597810e-06	ci right 1.435025e-05	k: 28	n:2820000
Cons ci ratio: 2.807931e-03	ci left: 4.080999e-01	ci right 4.092478e-01	k: 1152460	n:2820000
KS ci ratio: 5.977897e-01	ci left: 1.073403e-05	ci right 2.013179e-05	k: 42	n:2820000
C16orf45   2820000 perm   3467 sec   (813 perm/sec)   p_kst 1.489362e-05   p_cons 4.086738e-01   p_joint 9.929078e-06

Joint ci ratio: 7.279219e-01	ci left: 6.574496e-06	ci right 1.429954e-05	k: 28	n:2830000
Cons ci ratio: 2.802736e-03	ci left: 4.081406e-01	ci right 4.092864e-01	k: 1156659	n:2830000
KS ci ratio: 5.977897e-01	ci left: 1.069610e-05	ci right 2.006065e-05	k: 42	n:2830000
C16orf45   2830000 perm   3490 sec   (811 perm/sec)   p_kst 1.484099e-05   p_cons 4.087134e-01   p_joint 9.893993e-06

Joint ci ratio: 7.279219e-01	ci left: 6.551347e-06	ci right 1.424919e-05	k: 28	n:2840000
Cons ci ratio: 2.797795e-03	ci left: 4.081419e-01	ci right 4.092857e-01	k: 1160747	n:2840000
KS ci ratio: 5.977898e-01	ci left: 1.065844e-05	ci right 1.999002e-05	k: 42	n:2840000
C16orf45   2840000 perm   3513 sec   (809 perm/sec)   p_kst 1.478873e-05   p_cons 4.087137e-01   p_joint 9.859155e-06

Joint ci ratio: 7.279219e-01	ci left: 6.528359e-06	ci right 1.419920e-05	k: 28	n:2850000
Cons ci ratio: 2.793006e-03	ci left: 4.081215e-01	ci right 4.092633e-01	k: 1164773	n:2850000
KS ci ratio: 5.977898e-01	ci left: 1.062104e-05	ci right 1.991988e-05	k: 42	n:2850000
C16orf45   2850000 perm   3536 sec   (806 perm/sec)   p_kst 1.473684e-05   p_cons 4.086923e-01   p_joint 9.824561e-06

Joint ci ratio: 7.279219e-01	ci left: 6.505533e-06	ci right 1.414955e-05	k: 28	n:2860000
Cons ci ratio: 2.788050e-03	ci left: 4.081344e-01	ci right 4.092742e-01	k: 1168894	n:2860000
KS ci ratio: 5.977898e-01	ci left: 1.058390e-05	ci right 1.985023e-05	k: 42	n:2860000
C16orf45   2860000 perm   3559 sec   (804 perm/sec)   p_kst 1.468531e-05   p_cons 4.087042e-01   p_joint 9.790210e-06

Joint ci ratio: 7.156869e-01	ci left: 6.767172e-06	ci right 1.451176e-05	k: 29	n:2870000
Cons ci ratio: 2.783173e-03	ci left: 4.081381e-01	ci right 4.092760e-01	k: 1172989	n:2870000
KS ci ratio: 5.977898e-01	ci left: 1.054703e-05	ci right 1.978106e-05	k: 42	n:2870000
C16orf45   2870000 perm   3582 sec   (801 perm/sec)   p_kst 1.463415e-05   p_cons 4.087070e-01   p_joint 1.010453e-05

Joint ci ratio: 7.156870e-01	ci left: 6.743675e-06	ci right 1.446137e-05	k: 29	n:2880000
Cons ci ratio: 2.778409e-03	ci left: 4.081266e-01	ci right 4.092625e-01	k: 1177040	n:2880000
KS ci ratio: 5.977898e-01	ci left: 1.051040e-05	ci right 1.971238e-05	k: 42	n:2880000
C16orf45   2880000 perm   3605 sec   (799 perm/sec)   p_kst 1.458333e-05   p_cons 4.086944e-01   p_joint 1.006944e-05

Joint ci ratio: 7.156870e-01	ci left: 6.720340e-06	ci right 1.441133e-05	k: 29	n:2890000
Cons ci ratio: 2.773770e-03	ci left: 4.080975e-01	ci right 4.092314e-01	k: 1181040	n:2890000
KS ci ratio: 5.977898e-01	ci left: 1.047404e-05	ci right 1.964417e-05	k: 42	n:2890000
C16orf45   2890000 perm   3629 sec   (796 perm/sec)   p_kst 1.453287e-05   p_cons 4.086644e-01   p_joint 1.003460e-05

Joint ci ratio: 7.156870e-01	ci left: 6.697167e-06	ci right 1.436164e-05	k: 29	n:2900000
Cons ci ratio: 2.768886e-03	ci left: 4.081155e-01	ci right 4.092474e-01	k: 1185176	n:2900000
KS ci ratio: 5.977899e-01	ci left: 1.043792e-05	ci right 1.957643e-05	k: 42	n:2900000
C16orf45   2900000 perm   3652 sec   (794 perm/sec)   p_kst 1.448276e-05   p_cons 4.086814e-01   p_joint 1.000000e-05

Joint ci ratio: 7.156870e-01	ci left: 6.674152e-06	ci right 1.431228e-05	k: 29	n:2910000
Cons ci ratio: 2.764060e-03	ci left: 4.081279e-01	ci right 4.092579e-01	k: 1189296	n:2910000
KS ci ratio: 5.909577e-01	ci left: 1.069394e-05	ci right 1.990398e-05	k: 43	n:2910000
C16orf45   2910000 perm   3676 sec   (792 perm/sec)   p_kst 1.477663e-05   p_cons 4.086928e-01   p_joint 9.965636e-06

Joint ci ratio: 7.040489e-01	ci left: 6.931817e-06	ci right 1.466670e-05	k: 30	n:2920000
Cons ci ratio: 2.759072e-03	ci left: 4.081727e-01	ci right 4.093008e-01	k: 1193511	n:2920000
KS ci ratio: 5.909577e-01	ci left: 1.065732e-05	ci right 1.983581e-05	k: 43	n:2920000
C16orf45   2920000 perm   3699 sec   (789 perm/sec)   p_kst 1.472603e-05   p_cons 4.087366e-01   p_joint 1.027397e-05

Joint ci ratio: 7.040489e-01	ci left: 6.908158e-06	ci right 1.461665e-05	k: 30	n:2930000
Cons ci ratio: 2.754421e-03	ci left: 4.081630e-01	ci right 4.092891e-01	k: 1197567	n:2930000
KS ci ratio: 5.909577e-01	ci left: 1.062095e-05	ci right 1.976811e-05	k: 43	n:2930000
C16orf45   2930000 perm   3723 sec   (787 perm/sec)   p_kst 1.467577e-05   p_cons 4.087259e-01   p_joint 1.023891e-05

Joint ci ratio: 4.467195e-01	ci left: 2.036718e-05	ci right 3.235545e-05	k: 76	n:2940000
Cons ci ratio: 2.749568e-03	ci left: 4.081927e-01	ci right 4.093170e-01	k: 1201739	n:2940000
KS ci ratio: 5.843545e-01	ci left: 1.087433e-05	ci right 2.009109e-05	k: 44	n:2940000
C16orf45   2940000 perm   3747 sec   (785 perm/sec)   p_kst 1.496599e-05   p_cons 4.087548e-01   p_joint 2.585034e-05

Joint ci ratio: 4.467196e-01	ci left: 2.029814e-05	ci right 3.224577e-05	k: 76	n:2950000
Cons ci ratio: 2.744834e-03	ci left: 4.082060e-01	ci right 4.093284e-01	k: 1205863	n:2950000
KS ci ratio: 5.843545e-01	ci left: 1.083747e-05	ci right 2.002298e-05	k: 44	n:2950000
C16orf45   2950000 perm   3771 sec   (782 perm/sec)   p_kst 1.491525e-05   p_cons 4.087671e-01   p_joint 2.576271e-05

Joint ci ratio: 4.438467e-01	ci left: 2.052951e-05	ci right 3.251232e-05	k: 77	n:2960000
Cons ci ratio: 2.740233e-03	ci left: 4.082000e-01	ci right 4.093204e-01	k: 1209930	n:2960000
KS ci ratio: 5.843546e-01	ci left: 1.080085e-05	ci right 1.995534e-05	k: 44	n:2960000
C16orf45   2960000 perm   3794 sec   (780 perm/sec)   p_kst 1.486486e-05   p_cons 4.087601e-01   p_joint 2.601351e-05

Joint ci ratio: 4.438467e-01	ci left: 2.046039e-05	ci right 3.240285e-05	k: 77	n:2970000
Cons ci ratio: 2.735547e-03	ci left: 4.082132e-01	ci right 4.093317e-01	k: 1214054	n:2970000
KS ci ratio: 5.843546e-01	ci left: 1.076449e-05	ci right 1.988815e-05	k: 44	n:2970000
C16orf45   2970000 perm   3819 sec   (778 perm/sec)   p_kst 1.481481e-05   p_cons 4.087724e-01   p_joint 2.592593e-05

Joint ci ratio: 4.438467e-01	ci left: 2.039173e-05	ci right 3.229412e-05	k: 77	n:2980000
Cons ci ratio: 2.730723e-03	ci left: 4.082548e-01	ci right 4.093715e-01	k: 1218263	n:2980000
KS ci ratio: 5.843546e-01	ci left: 1.072836e-05	ci right 1.982141e-05	k: 44	n:2980000
C16orf45   2980000 perm   3842 sec   (776 perm/sec)   p_kst 1.476510e-05   p_cons 4.088131e-01   p_joint 2.583893e-05

Joint ci ratio: 4.438467e-01	ci left: 2.032353e-05	ci right 3.218611e-05	k: 77	n:2990000
Cons ci ratio: 2.726164e-03	ci left: 4.082537e-01	ci right 4.093685e-01	k: 1222345	n:2990000
KS ci ratio: 5.843546e-01	ci left: 1.069248e-05	ci right 1.975512e-05	k: 44	n:2990000
C16orf45   2990000 perm   3866 sec   (773 perm/sec)   p_kst 1.471572e-05   p_cons 4.088110e-01   p_joint 2.575251e-05

Joint ci ratio: 4.438468e-01	ci left: 2.025578e-05	ci right 3.207883e-05	k: 77	n:3000000
Cons ci ratio: 2.721630e-03	ci left: 4.082523e-01	ci right 4.093652e-01	k: 1226426	n:3000000
KS ci ratio: 5.843546e-01	ci left: 1.065684e-05	ci right 1.968927e-05	k: 44	n:3000000
C16orf45   3000000 perm   3890 sec   (771 perm/sec)   p_kst 1.466667e-05   p_cons 4.088087e-01   p_joint 2.566667e-05

Joint ci ratio: 4.438468e-01	ci left: 2.018849e-05	ci right 3.197225e-05	k: 77	n:3010000
Cons ci ratio: 2.717158e-03	ci left: 4.082439e-01	ci right 4.093550e-01	k: 1230486	n:3010000
KS ci ratio: 5.843546e-01	ci left: 1.062144e-05	ci right 1.962385e-05	k: 44	n:3010000
C16orf45   3010000 perm   3914 sec   (769 perm/sec)   p_kst 1.461794e-05   p_cons 4.087993e-01   p_joint 2.558140e-05

Joint ci ratio: 4.438468e-01	ci left: 2.012164e-05	ci right 3.186638e-05	k: 77	n:3020000
Cons ci ratio: 2.712620e-03	ci left: 4.082511e-01	ci right 4.093603e-01	k: 1234593	n:3020000
KS ci ratio: 5.843546e-01	ci left: 1.058627e-05	ci right 1.955887e-05	k: 44	n:3020000
C16orf45   3020000 perm   3939 sec   (767 perm/sec)   p_kst 1.456954e-05   p_cons 4.088056e-01   p_joint 2.549669e-05

Joint ci ratio: 4.438468e-01	ci left: 2.005523e-05	ci right 3.176122e-05	k: 77	n:3030000
Cons ci ratio: 2.707952e-03	ci left: 4.082856e-01	ci right 4.093931e-01	k: 1238783	n:3030000
KS ci ratio: 5.843547e-01	ci left: 1.055133e-05	ci right 1.949432e-05	k: 44	n:3030000
C16orf45   3030000 perm   3962 sec   (765 perm/sec)   p_kst 1.452145e-05   p_cons 4.088393e-01   p_joint 2.541254e-05

Joint ci ratio: 4.410287e-01	ci left: 2.028155e-05	ci right 3.202211e-05	k: 78	n:3040000
Cons ci ratio: 2.703525e-03	ci left: 4.082812e-01	ci right 4.093868e-01	k: 1242855	n:3040000
KS ci ratio: 5.843547e-01	ci left: 1.051662e-05	ci right 1.943020e-05	k: 44	n:3040000
C16orf45   3040000 perm   3987 sec   (762 perm/sec)   p_kst 1.447368e-05   p_cons 4.088339e-01   p_joint 2.565789e-05

Joint ci ratio: 4.410287e-01	ci left: 2.021506e-05	ci right 3.191712e-05	k: 78	n:3050000
Cons ci ratio: 2.699077e-03	ci left: 4.082843e-01	ci right 4.093880e-01	k: 1246950	n:3050000
KS ci ratio: 5.843547e-01	ci left: 1.048214e-05	ci right 1.936649e-05	k: 44	n:3050000
C16orf45   3050000 perm   4012 sec   (760 perm/sec)   p_kst 1.442623e-05   p_cons 4.088361e-01   p_joint 2.557377e-05

Joint ci ratio: 4.410287e-01	ci left: 2.014899e-05	ci right 3.181282e-05	k: 78	n:3060000
Cons ci ratio: 2.694534e-03	ci left: 4.083082e-01	ci right 4.094102e-01	k: 1251109	n:3060000
KS ci ratio: 5.843547e-01	ci left: 1.044788e-05	ci right 1.930320e-05	k: 44	n:3060000
C16orf45   3060000 perm   4038 sec   (758 perm/sec)   p_kst 1.437908e-05   p_cons 4.088592e-01   p_joint 2.549020e-05

Joint ci ratio: 4.410287e-01	ci left: 2.008336e-05	ci right 3.170919e-05	k: 78	n:3070000
Cons ci ratio: 2.690054e-03	ci left: 4.083249e-01	ci right 4.094251e-01	k: 1255246	n:3070000
KS ci ratio: 5.843547e-01	ci left: 1.041385e-05	ci right 1.924033e-05	k: 44	n:3070000
C16orf45   3070000 perm   4063 sec   (756 perm/sec)   p_kst 1.433225e-05   p_cons 4.088749e-01   p_joint 2.540717e-05

Joint ci ratio: 4.410287e-01	ci left: 2.001815e-05	ci right 3.160624e-05	k: 78	n:3080000
Cons ci ratio: 2.685828e-03	ci left: 4.082999e-01	ci right 4.093983e-01	k: 1259255	n:3080000
KS ci ratio: 5.843547e-01	ci left: 1.038004e-05	ci right 1.917786e-05	k: 44	n:3080000
C16orf45   3080000 perm   4088 sec   (753 perm/sec)   p_kst 1.428571e-05   p_cons 4.088490e-01   p_joint 2.532468e-05

Joint ci ratio: 4.410287e-01	ci left: 1.995337e-05	ci right 3.150396e-05	k: 78	n:3090000
Cons ci ratio: 2.681607e-03	ci left: 4.082777e-01	ci right 4.093743e-01	k: 1263272	n:3090000
KS ci ratio: 5.843547e-01	ci left: 1.034645e-05	ci right 1.911579e-05	k: 44	n:3090000
C16orf45   3090000 perm   4113 sec   (751 perm/sec)   p_kst 1.423948e-05   p_cons 4.088259e-01   p_joint 2.524272e-05

Joint ci ratio: 4.410288e-01	ci left: 1.988901e-05	ci right 3.140233e-05	k: 78	n:3100000
Cons ci ratio: 2.677139e-03	ci left: 4.083036e-01	ci right 4.093985e-01	k: 1267438	n:3100000
KS ci ratio: 5.843548e-01	ci left: 1.031307e-05	ci right 1.905413e-05	k: 44	n:3100000
C16orf45   3100000 perm   4139 sec   (749 perm/sec)   p_kst 1.419355e-05   p_cons 4.088510e-01   p_joint 2.516129e-05

Joint ci ratio: 4.410288e-01	ci left: 1.982505e-05	ci right 3.130136e-05	k: 78	n:3110000
Cons ci ratio: 2.672722e-03	ci left: 4.083243e-01	ci right 4.094174e-01	k: 1271588	n:3110000
KS ci ratio: 5.843548e-01	ci left: 1.027991e-05	ci right 1.899286e-05	k: 44	n:3110000
C16orf45   3110000 perm   4164 sec   (747 perm/sec)   p_kst 1.414791e-05   p_cons 4.088707e-01   p_joint 2.508039e-05

Joint ci ratio: 4.410288e-01	ci left: 1.976151e-05	ci right 3.120103e-05	k: 78	n:3120000
Cons ci ratio: 2.668527e-03	ci left: 4.083086e-01	ci right 4.093999e-01	k: 1275625	n:3120000
KS ci ratio: 5.843548e-01	ci left: 1.024696e-05	ci right 1.893199e-05	k: 44	n:3120000
C16orf45   3120000 perm   4189 sec   (745 perm/sec)   p_kst 1.410256e-05   p_cons 4.088542e-01   p_joint 2.500000e-05

Joint ci ratio: 4.410288e-01	ci left: 1.969838e-05	ci right 3.110135e-05	k: 78	n:3130000
Cons ci ratio: 2.664318e-03	ci left: 4.082991e-01	ci right 4.093886e-01	k: 1279681	n:3130000
KS ci ratio: 5.843548e-01	ci left: 1.021422e-05	ci right 1.887150e-05	k: 44	n:3130000
C16orf45   3130000 perm   4213 sec   (743 perm/sec)   p_kst 1.405751e-05   p_cons 4.088438e-01   p_joint 2.492013e-05

Joint ci ratio: 4.410288e-01	ci left: 1.963564e-05	ci right 3.100230e-05	k: 78	n:3140000
Cons ci ratio: 2.660006e-03	ci left: 4.083119e-01	ci right 4.093997e-01	k: 1283807	n:3140000
KS ci ratio: 5.843548e-01	ci left: 1.018170e-05	ci right 1.881140e-05	k: 44	n:3140000
C16orf45   3140000 perm   4238 sec   (741 perm/sec)   p_kst 1.401274e-05   p_cons 4.088557e-01   p_joint 2.484076e-05

Joint ci ratio: 4.410289e-01	ci left: 1.957331e-05	ci right 3.090388e-05	k: 78	n:3150000
Cons ci ratio: 2.655904e-03	ci left: 4.082904e-01	ci right 4.093765e-01	k: 1287825	n:3150000
KS ci ratio: 5.843548e-01	ci left: 1.014937e-05	ci right 1.875168e-05	k: 44	n:3150000
C16orf45   3150000 perm   4263 sec   (739 perm/sec)   p_kst 1.396825e-05   p_cons 4.088333e-01   p_joint 2.476190e-05

Joint ci ratio: 4.753646e-01	ci left: 1.643171e-05	ci right 2.692639e-05	k: 67	n:3160000
Cons ci ratio: 2.651718e-03	ci left: 4.082876e-01	ci right 4.093720e-01	k: 1291902	n:3160000
KS ci ratio: 5.843548e-01	ci left: 1.011725e-05	ci right 1.869234e-05	k: 44	n:3160000
C16orf45   3160000 perm   4288 sec   (737 perm/sec)   p_kst 1.392405e-05   p_cons 4.088297e-01   p_joint 2.120253e-05

Joint ci ratio: 4.753647e-01	ci left: 1.637987e-05	ci right 2.684145e-05	k: 67	n:3170000
Cons ci ratio: 2.647441e-03	ci left: 4.083051e-01	ci right 4.093878e-01	k: 1296043	n:3170000
KS ci ratio: 5.843549e-01	ci left: 1.008534e-05	ci right 1.863338e-05	k: 44	n:3170000
C16orf45   3170000 perm   4314 sec   (735 perm/sec)   p_kst 1.388013e-05   p_cons 4.088464e-01   p_joint 2.113565e-05

Joint ci ratio: 4.685244e-01	ci left: 1.688247e-05	ci right 2.746027e-05	k: 69	n:3180000
Cons ci ratio: 2.643367e-03	ci left: 4.082892e-01	ci right 4.093701e-01	k: 1300078	n:3180000
KS ci ratio: 5.717865e-01	ci left: 1.059052e-05	ci right 1.929478e-05	k: 46	n:3180000
C16orf45   3180000 perm   4340 sec   (733 perm/sec)   p_kst 1.446541e-05   p_cons 4.088296e-01   p_joint 2.169811e-05

Joint ci ratio: 4.685244e-01	ci left: 1.682954e-05	ci right 2.737419e-05	k: 69	n:3190000
Cons ci ratio: 2.639242e-03	ci left: 4.082861e-01	ci right 4.093654e-01	k: 1304154	n:3190000
KS ci ratio: 5.717865e-01	ci left: 1.055732e-05	ci right 1.923430e-05	k: 46	n:3190000
C16orf45   3190000 perm   4364 sec   (731 perm/sec)   p_kst 1.442006e-05   p_cons 4.088257e-01   p_joint 2.163009e-05

Joint ci ratio: 4.685244e-01	ci left: 1.677695e-05	ci right 2.728865e-05	k: 69	n:3200000
Cons ci ratio: 2.635168e-03	ci left: 4.082772e-01	ci right 4.093548e-01	k: 1308211	n:3200000
KS ci ratio: 5.717865e-01	ci left: 1.052433e-05	ci right 1.917419e-05	k: 46	n:3200000
C16orf45   3200000 perm   4390 sec   (729 perm/sec)   p_kst 1.437500e-05   p_cons 4.088159e-01   p_joint 2.156250e-05

Joint ci ratio: 4.652132e-01	ci left: 1.699955e-05	ci right 2.755157e-05	k: 70	n:3210000
Cons ci ratio: 2.630958e-03	ci left: 4.082967e-01	ci right 4.093726e-01	k: 1312359	n:3210000
KS ci ratio: 5.717865e-01	ci left: 1.049154e-05	ci right 1.911446e-05	k: 46	n:3210000
C16orf45   3210000 perm   4416 sec   (727 perm/sec)   p_kst 1.433022e-05   p_cons 4.088346e-01   p_joint 2.180685e-05

Joint ci ratio: 4.652132e-01	ci left: 1.694676e-05	ci right 2.746600e-05	k: 70	n:3220000
Cons ci ratio: 2.626741e-03	ci left: 4.083213e-01	ci right 4.093956e-01	k: 1316524	n:3220000
KS ci ratio: 5.717865e-01	ci left: 1.045896e-05	ci right 1.905510e-05	k: 46	n:3220000
C16orf45   3220000 perm   4442 sec   (725 perm/sec)   p_kst 1.428571e-05   p_cons 4.088584e-01   p_joint 2.173913e-05

Joint ci ratio: 4.652132e-01	ci left: 1.689429e-05	ci right 2.738097e-05	k: 70	n:3230000
Cons ci ratio: 2.622701e-03	ci left: 4.083167e-01	ci right 4.093893e-01	k: 1320595	n:3230000
KS ci ratio: 5.717865e-01	ci left: 1.042658e-05	ci right 1.899610e-05	k: 46	n:3230000
C16orf45   3230000 perm   4468 sec   (723 perm/sec)   p_kst 1.424149e-05   p_cons 4.088529e-01   p_joint 2.167183e-05

Joint ci ratio: 4.652132e-01	ci left: 1.684215e-05	ci right 2.729646e-05	k: 70	n:3240000
Cons ci ratio: 2.618673e-03	ci left: 4.083134e-01	ci right 4.093843e-01	k: 1324670	n:3240000
KS ci ratio: 5.717865e-01	ci left: 1.039440e-05	ci right 1.893747e-05	k: 46	n:3240000
C16orf45   3240000 perm   4494 sec   (721 perm/sec)   p_kst 1.419753e-05   p_cons 4.088488e-01   p_joint 2.160494e-05

Joint ci ratio: 4.652133e-01	ci left: 1.679032e-05	ci right 2.721247e-05	k: 70	n:3250000
Cons ci ratio: 2.614685e-03	ci left: 4.083061e-01	ci right 4.093753e-01	k: 1328732	n:3250000
KS ci ratio: 5.717865e-01	ci left: 1.036241e-05	ci right 1.887920e-05	k: 46	n:3250000
C16orf45   3250000 perm   4521 sec   (719 perm/sec)   p_kst 1.415385e-05   p_cons 4.088406e-01   p_joint 2.153846e-05

Joint ci ratio: 4.652133e-01	ci left: 1.673882e-05	ci right 2.712900e-05	k: 70	n:3260000
Cons ci ratio: 2.610560e-03	ci left: 4.083276e-01	ci right 4.093953e-01	k: 1332888	n:3260000
KS ci ratio: 5.717866e-01	ci left: 1.033063e-05	ci right 1.882129e-05	k: 46	n:3260000
C16orf45   3260000 perm   4547 sec   (717 perm/sec)   p_kst 1.411043e-05   p_cons 4.088613e-01   p_joint 2.147239e-05

Joint ci ratio: 4.652133e-01	ci left: 1.668763e-05	ci right 2.704604e-05	k: 70	n:3270000
Cons ci ratio: 2.606632e-03	ci left: 4.083160e-01	ci right 4.093820e-01	k: 1336936	n:3270000
KS ci ratio: 5.717866e-01	ci left: 1.029903e-05	ci right 1.876373e-05	k: 46	n:3270000
C16orf45   3270000 perm   4573 sec   (715 perm/sec)   p_kst 1.406728e-05   p_cons 4.088489e-01   p_joint 2.140673e-05

Joint ci ratio: 4.652133e-01	ci left: 1.663675e-05	ci right 2.696358e-05	k: 70	n:3280000
Cons ci ratio: 2.602817e-03	ci left: 4.082868e-01	ci right 4.093512e-01	k: 1340926	n:3280000
KS ci ratio: 5.717866e-01	ci left: 1.026763e-05	ci right 1.870653e-05	k: 46	n:3280000
C16orf45   3280000 perm   4600 sec   (713 perm/sec)   p_kst 1.402439e-05   p_cons 4.088189e-01   p_joint 2.134146e-05

Joint ci ratio: 4.652133e-01	ci left: 1.658619e-05	ci right 2.688162e-05	k: 70	n:3290000
Cons ci ratio: 2.598882e-03	ci left: 4.082833e-01	ci right 4.093460e-01	k: 1345000	n:3290000
KS ci ratio: 5.717866e-01	ci left: 1.023643e-05	ci right 1.864967e-05	k: 46	n:3290000
C16orf45   3290000 perm   4626 sec   (711 perm/sec)   p_kst 1.398176e-05   p_cons 4.088146e-01   p_joint 2.127660e-05

Joint ci ratio: 4.619713e-01	ci left: 1.680355e-05	ci right 2.713836e-05	k: 71	n:3300000
Cons ci ratio: 2.594961e-03	ci left: 4.082804e-01	ci right 4.093416e-01	k: 1349076	n:3300000
KS ci ratio: 5.657991e-01	ci left: 1.046482e-05	ci right 1.893936e-05	k: 47	n:3300000
C16orf45   3300000 perm   4653 sec   (709 perm/sec)   p_kst 1.424242e-05   p_cons 4.088109e-01   p_joint 2.151515e-05

Joint ci ratio: 4.825138e-01	ci left: 1.515581e-05	ci right 2.502949e-05	k: 65	n:3310000
Cons ci ratio: 2.591234e-03	ci left: 4.082446e-01	ci right 4.093042e-01	k: 1353043	n:3310000
KS ci ratio: 5.657991e-01	ci left: 1.043320e-05	ci right 1.888214e-05	k: 47	n:3310000
C16orf45   3310000 perm   4680 sec   (707 perm/sec)   p_kst 1.419940e-05   p_cons 4.087743e-01   p_joint 1.963746e-05

Joint ci ratio: 4.825138e-01	ci left: 1.511016e-05	ci right 2.495410e-05	k: 65	n:3320000
Cons ci ratio: 2.587314e-03	ci left: 4.082482e-01	ci right 4.093061e-01	k: 1357140	n:3320000
KS ci ratio: 5.657991e-01	ci left: 1.040177e-05	ci right 1.882527e-05	k: 47	n:3320000
C16orf45   3320000 perm   4706 sec   (705 perm/sec)   p_kst 1.415663e-05   p_cons 4.087771e-01   p_joint 1.957831e-05

Joint ci ratio: 4.825138e-01	ci left: 1.506478e-05	ci right 2.487916e-05	k: 65	n:3330000
Cons ci ratio: 2.583297e-03	ci left: 4.082731e-01	ci right 4.093294e-01	k: 1361308	n:3330000
KS ci ratio: 5.657991e-01	ci left: 1.037054e-05	ci right 1.876874e-05	k: 47	n:3330000
C16orf45   3330000 perm   4733 sec   (704 perm/sec)   p_kst 1.411411e-05   p_cons 4.088012e-01   p_joint 1.951952e-05

Joint ci ratio: 4.825138e-01	ci left: 1.501968e-05	ci right 2.480467e-05	k: 65	n:3340000
Cons ci ratio: 2.579506e-03	ci left: 4.082592e-01	ci right 4.093140e-01	k: 1365347	n:3340000
KS ci ratio: 5.657991e-01	ci left: 1.033949e-05	ci right 1.871254e-05	k: 47	n:3340000
C16orf45   3340000 perm   4761 sec   (702 perm/sec)   p_kst 1.407186e-05   p_cons 4.087865e-01   p_joint 1.946108e-05

Joint ci ratio: 4.825138e-01	ci left: 1.497485e-05	ci right 2.473063e-05	k: 65	n:3350000
Cons ci ratio: 2.575651e-03	ci left: 4.082604e-01	ci right 4.093135e-01	k: 1369436	n:3350000
KS ci ratio: 5.657991e-01	ci left: 1.030862e-05	ci right 1.865668e-05	k: 47	n:3350000
C16orf45   3350000 perm   4788 sec   (700 perm/sec)   p_kst 1.402985e-05   p_cons 4.087869e-01   p_joint 1.940299e-05

Joint ci ratio: 4.753649e-01	ci left: 1.545363e-05	ci right 2.532363e-05	k: 67	n:3360000
Cons ci ratio: 2.571932e-03	ci left: 4.082392e-01	ci right 4.092908e-01	k: 1373450	n:3360000
KS ci ratio: 5.599958e-01	ci left: 1.053318e-05	ci right 1.894074e-05	k: 48	n:3360000
C16orf45   3360000 perm   4815 sec   (698 perm/sec)   p_kst 1.428571e-05   p_cons 4.087649e-01   p_joint 1.994048e-05

Joint ci ratio: 4.753650e-01	ci left: 1.540777e-05	ci right 2.524849e-05	k: 67	n:3370000
Cons ci ratio: 2.568171e-03	ci left: 4.082291e-01	ci right 4.092791e-01	k: 1377501	n:3370000
KS ci ratio: 5.599958e-01	ci left: 1.050192e-05	ci right 1.888454e-05	k: 48	n:3370000
C16orf45   3370000 perm   4842 sec   (696 perm/sec)   p_kst 1.424332e-05   p_cons 4.087540e-01   p_joint 1.988131e-05

Joint ci ratio: 4.753650e-01	ci left: 1.536219e-05	ci right 2.517379e-05	k: 67	n:3380000
Cons ci ratio: 2.564304e-03	ci left: 4.082421e-01	ci right 4.092906e-01	k: 1381630	n:3380000
KS ci ratio: 5.599959e-01	ci left: 1.047085e-05	ci right 1.882867e-05	k: 48	n:3380000
C16orf45   3380000 perm   4870 sec   (694 perm/sec)   p_kst 1.420118e-05   p_cons 4.087663e-01   p_joint 1.982249e-05

Joint ci ratio: 4.753650e-01	ci left: 1.531687e-05	ci right 2.509953e-05	k: 67	n:3390000
Cons ci ratio: 2.560653e-03	ci left: 4.082176e-01	ci right 4.092645e-01	k: 1385632	n:3390000
KS ci ratio: 5.599959e-01	ci left: 1.043996e-05	ci right 1.877312e-05	k: 48	n:3390000
C16orf45   3390000 perm   4897 sec   (692 perm/sec)   p_kst 1.415929e-05   p_cons 4.087410e-01   p_joint 1.976401e-05

Joint ci ratio: 4.685247e-01	ci left: 1.579007e-05	ci right 2.568344e-05	k: 69	n:3400000
Cons ci ratio: 2.556937e-03	ci left: 4.082086e-01	ci right 4.092539e-01	k: 1389686	n:3400000
KS ci ratio: 5.489056e-01	ci left: 1.091501e-05	ci right 1.938783e-05	k: 50	n:3400000
C16orf45   3400000 perm   4924 sec   (690 perm/sec)   p_kst 1.470588e-05   p_cons 4.087312e-01   p_joint 2.029412e-05

Joint ci ratio: 4.619715e-01	ci left: 1.626150e-05	ci right 2.626293e-05	k: 71	n:3410000
Cons ci ratio: 2.553292e-03	ci left: 4.081890e-01	ci right 4.092328e-01	k: 1393704	n:3410000
KS ci ratio: 5.384491e-01	ci left: 1.138890e-05	ci right 1.999734e-05	k: 52	n:3410000
C16orf45   3410000 perm   4952 sec   (689 perm/sec)   p_kst 1.524927e-05   p_cons 4.087109e-01   p_joint 2.082111e-05

Joint ci ratio: 4.619715e-01	ci left: 1.621395e-05	ci right 2.618614e-05	k: 71	n:3420000
Cons ci ratio: 2.549592e-03	ci left: 4.081830e-01	ci right 4.092253e-01	k: 1397768	n:3420000
KS ci ratio: 5.384492e-01	ci left: 1.135560e-05	ci right 1.993887e-05	k: 52	n:3420000
C16orf45   3420000 perm   4979 sec   (687 perm/sec)   p_kst 1.520468e-05   p_cons 4.087041e-01   p_joint 2.076023e-05

Joint ci ratio: 4.619715e-01	ci left: 1.616668e-05	ci right 2.610980e-05	k: 71	n:3430000
Cons ci ratio: 2.545756e-03	ci left: 4.082059e-01	ci right 4.092467e-01	k: 1401931	n:3430000
KS ci ratio: 5.384492e-01	ci left: 1.132249e-05	ci right 1.988073e-05	k: 52	n:3430000
C16orf45   3430000 perm   5007 sec   (685 perm/sec)   p_kst 1.516035e-05   p_cons 4.087262e-01   p_joint 2.069971e-05

Joint ci ratio: 4.587964e-01	ci left: 1.637665e-05	ci right 2.635809e-05	k: 72	n:3440000
Cons ci ratio: 2.542158e-03	ci left: 4.081868e-01	ci right 4.092261e-01	k: 1405950	n:3440000
KS ci ratio: 5.334402e-01	ci left: 1.154090e-05	ci right 2.015266e-05	k: 53	n:3440000
C16orf45   3440000 perm   5035 sec   (683 perm/sec)   p_kst 1.540698e-05   p_cons 4.087064e-01   p_joint 2.093023e-05

Joint ci ratio: 4.556858e-01	ci left: 1.658564e-05	ci right 2.660472e-05	k: 73	n:3450000
Cons ci ratio: 2.538363e-03	ci left: 4.082081e-01	ci right 4.092459e-01	k: 1410108	n:3450000
KS ci ratio: 5.285684e-01	ci left: 1.175842e-05	ci right 2.042264e-05	k: 54	n:3450000
C16orf45   3450000 perm   5064 sec   (681 perm/sec)   p_kst 1.565217e-05   p_cons 4.087270e-01   p_joint 2.115942e-05

Joint ci ratio: 4.556858e-01	ci left: 1.653771e-05	ci right 2.652783e-05	k: 73	n:3460000
Cons ci ratio: 2.534694e-03	ci left: 4.082085e-01	ci right 4.092448e-01	k: 1414194	n:3460000
KS ci ratio: 5.285684e-01	ci left: 1.172443e-05	ci right 2.036362e-05	k: 54	n:3460000
C16orf45   3460000 perm   5092 sec   (679 perm/sec)   p_kst 1.560694e-05   p_cons 4.087266e-01   p_joint 2.109827e-05

Joint ci ratio: 4.556858e-01	ci left: 1.649005e-05	ci right 2.645138e-05	k: 73	n:3470000
Cons ci ratio: 2.530941e-03	ci left: 4.082279e-01	ci right 4.092627e-01	k: 1418346	n:3470000
KS ci ratio: 5.285684e-01	ci left: 1.169064e-05	ci right 2.030493e-05	k: 54	n:3470000
C16orf45   3470000 perm   5120 sec   (678 perm/sec)   p_kst 1.556196e-05   p_cons 4.087452e-01   p_joint 2.103746e-05

Joint ci ratio: 4.496499e-01	ci left: 1.695183e-05	ci right 2.701520e-05	k: 75	n:3480000
Cons ci ratio: 2.527346e-03	ci left: 4.082202e-01	ci right 4.092535e-01	k: 1422404	n:3480000
KS ci ratio: 5.238277e-01	ci left: 1.190621e-05	ci right 2.057181e-05	k: 55	n:3480000
C16orf45   3480000 perm   5148 sec   (676 perm/sec)   p_kst 1.580460e-05   p_cons 4.087368e-01   p_joint 2.155172e-05

Joint ci ratio: 4.496499e-01	ci left: 1.690326e-05	ci right 2.693779e-05	k: 75	n:3490000
Cons ci ratio: 2.523806e-03	ci left: 4.082051e-01	ci right 4.092369e-01	k: 1426436	n:3490000
KS ci ratio: 5.238278e-01	ci left: 1.187209e-05	ci right 2.051286e-05	k: 55	n:3490000
C16orf45   3490000 perm   5176 sec   (674 perm/sec)   p_kst 1.575931e-05   p_cons 4.087209e-01   p_joint 2.148997e-05

Joint ci ratio: 4.496499e-01	ci left: 1.685497e-05	ci right 2.686083e-05	k: 75	n:3500000
Cons ci ratio: 2.520104e-03	ci left: 4.082238e-01	ci right 4.092541e-01	k: 1430586	n:3500000
KS ci ratio: 5.238278e-01	ci left: 1.183817e-05	ci right 2.045425e-05	k: 55	n:3500000
C16orf45   3500000 perm   5204 sec   (673 perm/sec)   p_kst 1.571429e-05   p_cons 4.087389e-01   p_joint 2.142857e-05

Joint ci ratio: 3.266599e-01	ci left: 3.433722e-05	ci right 4.799183e-05	k: 143	n:3510000
Cons ci ratio: 2.516376e-03	ci left: 4.082506e-01	ci right 4.092795e-01	k: 1434765	n:3510000
KS ci ratio: 5.103362e-01	ci left: 1.254755e-05	ci right 2.136133e-05	k: 58	n:3510000
C16orf45   3510000 perm   5233 sec   (671 perm/sec)   p_kst 1.652422e-05   p_cons 4.087650e-01   p_joint 4.074074e-05

Joint ci ratio: 3.266599e-01	ci left: 3.423967e-05	ci right 4.785549e-05	k: 143	n:3520000
Cons ci ratio: 2.512899e-03	ci left: 4.082321e-01	ci right 4.092595e-01	k: 1438785	n:3520000
KS ci ratio: 5.103362e-01	ci left: 1.251191e-05	ci right 2.130064e-05	k: 58	n:3520000
C16orf45   3520000 perm   5261 sec   (669 perm/sec)   p_kst 1.647727e-05   p_cons 4.087457e-01   p_joint 4.062500e-05

Joint ci ratio: 3.266600e-01	ci left: 3.414267e-05	ci right 4.771992e-05	k: 143	n:3530000
Cons ci ratio: 2.509200e-03	ci left: 4.082593e-01	ci right 4.092853e-01	k: 1442966	n:3530000
KS ci ratio: 5.103362e-01	ci left: 1.247646e-05	ci right 2.124030e-05	k: 58	n:3530000
C16orf45   3530000 perm   5289 sec   (667 perm/sec)   p_kst 1.643059e-05   p_cons 4.087722e-01   p_joint 4.050992e-05

Joint ci ratio: 3.266600e-01	ci left: 3.404623e-05	ci right 4.758512e-05	k: 143	n:3540000
Cons ci ratio: 2.505748e-03	ci left: 4.082418e-01	ci right 4.092663e-01	k: 1446989	n:3540000
KS ci ratio: 5.103362e-01	ci left: 1.244122e-05	ci right 2.118030e-05	k: 58	n:3540000
C16orf45   3540000 perm   5318 sec   (666 perm/sec)   p_kst 1.638418e-05   p_cons 4.087540e-01   p_joint 4.039548e-05

Joint ci ratio: 3.255316e-01	ci left: 3.420895e-05	ci right 4.775575e-05	k: 144	n:3550000
Cons ci ratio: 2.502271e-03	ci left: 4.082319e-01	ci right 4.092550e-01	k: 1451039	n:3550000
KS ci ratio: 5.060655e-01	ci left: 1.265172e-05	ci right 2.143817e-05	k: 59	n:3550000
C16orf45   3550000 perm   5346 sec   (664 perm/sec)   p_kst 1.661972e-05   p_cons 4.087434e-01   p_joint 4.056338e-05

Joint ci ratio: 3.244148e-01	ci left: 3.437085e-05	ci right 4.792534e-05	k: 145	n:3560000
Cons ci ratio: 2.498765e-03	ci left: 4.082306e-01	ci right 4.092522e-01	k: 1455119	n:3560000
KS ci ratio: 5.019002e-01	ci left: 1.286135e-05	ci right 2.169430e-05	k: 60	n:3560000
C16orf45   3560000 perm   5374 sec   (662 perm/sec)   p_kst 1.685393e-05   p_cons 4.087413e-01   p_joint 4.073034e-05

Joint ci ratio: 3.233094e-01	ci left: 3.453192e-05	ci right 4.809390e-05	k: 146	n:3570000
Cons ci ratio: 2.495184e-03	ci left: 4.082466e-01	ci right 4.092667e-01	k: 1459261	n:3570000
KS ci ratio: 5.019002e-01	ci left: 1.282532e-05	ci right 2.163353e-05	k: 60	n:3570000
C16orf45   3570000 perm   5403 sec   (661 perm/sec)   p_kst 1.680672e-05   p_cons 4.087566e-01   p_joint 4.089636e-05

Joint ci ratio: 3.233095e-01	ci left: 3.443546e-05	ci right 4.795956e-05	k: 146	n:3580000
Cons ci ratio: 2.491635e-03	ci left: 4.082591e-01	ci right 4.092779e-01	k: 1463391	n:3580000
KS ci ratio: 5.019002e-01	ci left: 1.278950e-05	ci right 2.157310e-05	k: 60	n:3580000
C16orf45   3580000 perm   5432 sec   (659 perm/sec)   p_kst 1.675978e-05   p_cons 4.087684e-01   p_joint 4.078212e-05

Joint ci ratio: 3.222153e-01	ci left: 3.459552e-05	ci right 4.812700e-05	k: 147	n:3590000
Cons ci ratio: 2.488083e-03	ci left: 4.082752e-01	ci right 4.092926e-01	k: 1467534	n:3590000
KS ci ratio: 5.019002e-01	ci left: 1.275387e-05	ci right 2.151301e-05	k: 60	n:3590000
C16orf45   3590000 perm   5461 sec   (657 perm/sec)   p_kst 1.671309e-05   p_cons 4.087838e-01   p_joint 4.094708e-05

Joint ci ratio: 3.222153e-01	ci left: 3.449942e-05	ci right 4.799332e-05	k: 147	n:3600000
Cons ci ratio: 2.484635e-03	ci left: 4.082741e-01	ci right 4.092900e-01	k: 1471615	n:3600000
KS ci ratio: 5.019002e-01	ci left: 1.271845e-05	ci right 2.145325e-05	k: 60	n:3600000
C16orf45   3600000 perm   5490 sec   (656 perm/sec)   p_kst 1.666667e-05   p_cons 4.087819e-01   p_joint 4.083333e-05

Joint ci ratio: 3.222154e-01	ci left: 3.440386e-05	ci right 4.786037e-05	k: 147	n:3610000
Cons ci ratio: 2.481269e-03	ci left: 4.082596e-01	ci right 4.092741e-01	k: 1475648	n:3610000
KS ci ratio: 5.019003e-01	ci left: 1.268321e-05	ci right 2.139383e-05	k: 60	n:3610000
C16orf45   3610000 perm   5519 sec   (654 perm/sec)   p_kst 1.662050e-05   p_cons 4.087668e-01   p_joint 4.072022e-05

Joint ci ratio: 3.361309e-01	ci left: 3.126769e-05	ci right 4.414041e-05	k: 135	n:3620000
Cons ci ratio: 2.477873e-03	ci left: 4.082537e-01	ci right 4.092669e-01	k: 1479712	n:3620000
KS ci ratio: 4.978362e-01	ci left: 1.288957e-05	ci right 2.164554e-05	k: 61	n:3620000
C16orf45   3620000 perm   5548 sec   (652 perm/sec)   p_kst 1.685083e-05   p_cons 4.087602e-01   p_joint 3.729282e-05

Joint ci ratio: 3.361309e-01	ci left: 3.118155e-05	ci right 4.401881e-05	k: 135	n:3630000
Cons ci ratio: 2.474374e-03	ci left: 4.082708e-01	ci right 4.092825e-01	k: 1483859	n:3630000
KS ci ratio: 4.978362e-01	ci left: 1.285406e-05	ci right 2.158591e-05	k: 61	n:3630000
C16orf45   3630000 perm   5577 sec   (651 perm/sec)   p_kst 1.680441e-05   p_cons 4.087766e-01   p_joint 3.719008e-05

Joint ci ratio: 3.361309e-01	ci left: 3.109589e-05	ci right 4.389788e-05	k: 135	n:3640000
Cons ci ratio: 2.471057e-03	ci left: 4.082551e-01	ci right 4.092654e-01	k: 1487887	n:3640000
KS ci ratio: 4.978362e-01	ci left: 1.281875e-05	ci right 2.152661e-05	k: 61	n:3640000
C16orf45   3640000 perm   5606 sec   (649 perm/sec)   p_kst 1.675824e-05   p_cons 4.087602e-01   p_joint 3.708791e-05

Joint ci ratio: 3.361309e-01	ci left: 3.101069e-05	ci right 4.377762e-05	k: 135	n:3650000
Cons ci ratio: 2.467617e-03	ci left: 4.082660e-01	ci right 4.092750e-01	k: 1492012	n:3650000
KS ci ratio: 4.978362e-01	ci left: 1.278363e-05	ci right 2.146763e-05	k: 61	n:3650000
C16orf45   3650000 perm   5635 sec   (648 perm/sec)   p_kst 1.671233e-05   p_cons 4.087704e-01   p_joint 3.698630e-05

Joint ci ratio: 3.361309e-01	ci left: 3.092596e-05	ci right 4.365800e-05	k: 135	n:3660000
Cons ci ratio: 2.464268e-03	ci left: 4.082619e-01	ci right 4.092694e-01	k: 1496082	n:3660000
KS ci ratio: 4.978362e-01	ci left: 1.274870e-05	ci right 2.140898e-05	k: 61	n:3660000
C16orf45   3660000 perm   5665 sec   (646 perm/sec)   p_kst 1.666667e-05   p_cons 4.087656e-01   p_joint 3.688525e-05

Joint ci ratio: 3.349019e-01	ci left: 3.109122e-05	ci right 4.383439e-05	k: 136	n:3670000
Cons ci ratio: 2.460797e-03	ci left: 4.082844e-01	ci right 4.092906e-01	k: 1500250	n:3670000
KS ci ratio: 4.938693e-01	ci left: 1.295235e-05	ci right 2.165695e-05	k: 62	n:3670000
C16orf45   3670000 perm   5694 sec   (645 perm/sec)   p_kst 1.689373e-05   p_cons 4.087875e-01   p_joint 3.705722e-05

Joint ci ratio: 3.336863e-01	ci left: 3.125567e-05	ci right 4.400974e-05	k: 137	n:3680000
Cons ci ratio: 2.457409e-03	ci left: 4.082936e-01	ci right 4.092984e-01	k: 1504369	n:3680000
KS ci ratio: 4.938693e-01	ci left: 1.291716e-05	ci right 2.159810e-05	k: 62	n:3680000
C16orf45   3680000 perm   5724 sec   (643 perm/sec)   p_kst 1.684783e-05   p_cons 4.087959e-01   p_joint 3.722826e-05

Joint ci ratio: 3.336863e-01	ci left: 3.117097e-05	ci right 4.389048e-05	k: 137	n:3690000
Cons ci ratio: 2.454104e-03	ci left: 4.082889e-01	ci right 4.092923e-01	k: 1508437	n:3690000
KS ci ratio: 4.938693e-01	ci left: 1.288215e-05	ci right 2.153957e-05	k: 62	n:3690000
C16orf45   3690000 perm   5753 sec   (641 perm/sec)   p_kst 1.680217e-05   p_cons 4.087905e-01   p_joint 3.712737e-05

Joint ci ratio: 3.336863e-01	ci left: 3.108672e-05	ci right 4.377185e-05	k: 137	n:3700000
Cons ci ratio: 2.450793e-03	ci left: 4.082879e-01	ci right 4.092900e-01	k: 1512519	n:3700000
KS ci ratio: 4.938693e-01	ci left: 1.284733e-05	ci right 2.148136e-05	k: 62	n:3700000
C16orf45   3700000 perm   5783 sec   (640 perm/sec)   p_kst 1.675676e-05   p_cons 4.087889e-01   p_joint 3.702703e-05

Joint ci ratio: 3.324838e-01	ci left: 3.124993e-05	ci right 4.394587e-05	k: 138	n:3710000
Cons ci ratio: 2.447521e-03	ci left: 4.082822e-01	ci right 4.092829e-01	k: 1516583	n:3710000
KS ci ratio: 4.938693e-01	ci left: 1.281270e-05	ci right 2.142345e-05	k: 62	n:3710000
C16orf45   3710000 perm   5813 sec   (638 perm/sec)   p_kst 1.671159e-05   p_cons 4.087825e-01   p_joint 3.719677e-05

Joint ci ratio: 3.324838e-01	ci left: 3.116592e-05	ci right 4.382774e-05	k: 138	n:3720000
Cons ci ratio: 2.444283e-03	ci left: 4.082721e-01	ci right 4.092715e-01	k: 1520631	n:3720000
KS ci ratio: 4.938693e-01	ci left: 1.277826e-05	ci right 2.136586e-05	k: 62	n:3720000
C16orf45   3720000 perm   5843 sec   (637 perm/sec)   p_kst 1.666667e-05   p_cons 4.087718e-01   p_joint 3.709677e-05

Joint ci ratio: 3.312942e-01	ci left: 3.132813e-05	ci right 4.400059e-05	k: 139	n:3730000
Cons ci ratio: 2.440944e-03	ci left: 4.082847e-01	ci right 4.092828e-01	k: 1524763	n:3730000
KS ci ratio: 4.899957e-01	ci left: 1.297883e-05	ci right 2.160970e-05	k: 63	n:3730000
C16orf45   3730000 perm   5873 sec   (635 perm/sec)   p_kst 1.689008e-05   p_cons 4.087836e-01   p_joint 3.726542e-05

Joint ci ratio: 3.301173e-01	ci left: 3.148955e-05	ci right 4.417244e-05	k: 140	n:3740000
Cons ci ratio: 2.437618e-03	ci left: 4.082974e-01	ci right 4.092942e-01	k: 1528896	n:3740000
KS ci ratio: 4.862119e-01	ci left: 1.317858e-05	ci right 2.185197e-05	k: 64	n:3740000
C16orf45   3740000 perm   5903 sec   (634 perm/sec)   p_kst 1.711230e-05   p_cons 4.087957e-01   p_joint 3.743316e-05

Joint ci ratio: 3.301173e-01	ci left: 3.140557e-05	ci right 4.405465e-05	k: 140	n:3750000
Cons ci ratio: 2.434457e-03	ci left: 4.082800e-01	ci right 4.092754e-01	k: 1532916	n:3750000
KS ci ratio: 4.862119e-01	ci left: 1.314344e-05	ci right 2.179370e-05	k: 64	n:3750000
C16orf45   3750000 perm   5933 sec   (632 perm/sec)   p_kst 1.706667e-05   p_cons 4.087776e-01   p_joint 3.733333e-05

Joint ci ratio: 3.301173e-01	ci left: 3.132205e-05	ci right 4.393748e-05	k: 140	n:3760000
Cons ci ratio: 2.431142e-03	ci left: 4.082956e-01	ci right 4.092897e-01	k: 1537060	n:3760000
KS ci ratio: 4.862119e-01	ci left: 1.310848e-05	ci right 2.173574e-05	k: 64	n:3760000
C16orf45   3760000 perm   5963 sec   (631 perm/sec)   p_kst 1.702128e-05   p_cons 4.087926e-01   p_joint 3.723404e-05

Joint ci ratio: 3.301173e-01	ci left: 3.123897e-05	ci right 4.382094e-05	k: 140	n:3770000
Cons ci ratio: 2.427873e-03	ci left: 4.083047e-01	ci right 4.092975e-01	k: 1541180	n:3770000
KS ci ratio: 4.862119e-01	ci left: 1.307371e-05	ci right 2.167808e-05	k: 64	n:3770000
C16orf45   3770000 perm   5992 sec   (629 perm/sec)   p_kst 1.697613e-05   p_cons 4.088011e-01   p_joint 3.713528e-05

Joint ci ratio: 3.301174e-01	ci left: 3.115632e-05	ci right 4.370501e-05	k: 140	n:3780000
Cons ci ratio: 2.424686e-03	ci left: 4.083001e-01	ci right 4.092916e-01	k: 1545248	n:3780000
KS ci ratio: 4.862119e-01	ci left: 1.303912e-05	ci right 2.162074e-05	k: 64	n:3780000
C16orf45   3780000 perm   6131 sec   (617 perm/sec)   p_kst 1.693122e-05   p_cons 4.087958e-01   p_joint 3.703704e-05

Joint ci ratio: 3.289529e-01	ci left: 3.131614e-05	ci right 4.387530e-05	k: 141	n:3790000
Cons ci ratio: 2.421418e-03	ci left: 4.083142e-01	ci right 4.093044e-01	k: 1549387	n:3790000
KS ci ratio: 4.862119e-01	ci left: 1.300472e-05	ci right 2.156369e-05	k: 64	n:3790000
C16orf45   3790000 perm   6161 sec   (615 perm/sec)   p_kst 1.688654e-05   p_cons 4.088092e-01   p_joint 3.720317e-05

Joint ci ratio: 3.289529e-01	ci left: 3.123373e-05	ci right 4.375984e-05	k: 141	n:3800000
Cons ci ratio: 2.418328e-03	ci left: 4.082951e-01	ci right 4.092840e-01	k: 1553400	n:3800000
KS ci ratio: 4.862119e-01	ci left: 1.297050e-05	ci right 2.150694e-05	k: 64	n:3800000
C16orf45   3800000 perm   6191 sec   (614 perm/sec)   p_kst 1.684211e-05   p_cons 4.087895e-01   p_joint 3.710526e-05

Joint ci ratio: 3.278007e-01	ci left: 3.139259e-05	ci right 4.392901e-05	k: 142	n:3810000
Cons ci ratio: 2.415082e-03	ci left: 4.083100e-01	ci right 4.092975e-01	k: 1557542	n:3810000
KS ci ratio: 4.862119e-01	ci left: 1.293645e-05	ci right 2.145049e-05	k: 64	n:3810000
C16orf45   3810000 perm   6223 sec   (612 perm/sec)   p_kst 1.679790e-05   p_cons 4.088037e-01   p_joint 3.727034e-05

Joint ci ratio: 3.278007e-01	ci left: 3.131041e-05	ci right 4.381401e-05	k: 142	n:3820000
Cons ci ratio: 2.411906e-03	ci left: 4.083132e-01	ci right 4.092995e-01	k: 1561640	n:3820000
KS ci ratio: 4.862120e-01	ci left: 1.290259e-05	ci right 2.139434e-05	k: 64	n:3820000
C16orf45   3820000 perm   6277 sec   (609 perm/sec)   p_kst 1.675393e-05   p_cons 4.088063e-01   p_joint 3.717277e-05

Joint ci ratio: 3.278007e-01	ci left: 3.122866e-05	ci right 4.369961e-05	k: 142	n:3830000
Cons ci ratio: 2.408661e-03	ci left: 4.083327e-01	ci right 4.093176e-01	k: 1565800	n:3830000
KS ci ratio: 4.862120e-01	ci left: 1.286890e-05	ci right 2.133848e-05	k: 64	n:3830000
C16orf45   3830000 perm   6308 sec   (607 perm/sec)   p_kst 1.671018e-05   p_cons 4.088251e-01   p_joint 3.707572e-05

Joint ci ratio: 3.278007e-01	ci left: 3.114733e-05	ci right 4.358581e-05	k: 142	n:3840000
Cons ci ratio: 2.405519e-03	ci left: 4.083340e-01	ci right 4.093177e-01	k: 1569891	n:3840000
KS ci ratio: 4.862120e-01	ci left: 1.283539e-05	ci right 2.128291e-05	k: 64	n:3840000
C16orf45   3840000 perm   6339 sec   (606 perm/sec)   p_kst 1.666667e-05   p_cons 4.088258e-01   p_joint 3.697917e-05

Joint ci ratio: 3.278007e-01	ci left: 3.106643e-05	ci right 4.347260e-05	k: 142	n:3850000
Cons ci ratio: 2.402377e-03	ci left: 4.083380e-01	ci right 4.093204e-01	k: 1573992	n:3850000
KS ci ratio: 4.862120e-01	ci left: 1.280205e-05	ci right 2.122763e-05	k: 64	n:3850000
C16orf45   3850000 perm   6370 sec   (604 perm/sec)   p_kst 1.662338e-05   p_cons 4.088291e-01   p_joint 3.688312e-05

Joint ci ratio: 3.255321e-01	ci left: 3.146160e-05	ci right 4.392045e-05	k: 144	n:3860000
Cons ci ratio: 2.399347e-03	ci left: 4.083217e-01	ci right 4.093028e-01	k: 1578015	n:3860000
KS ci ratio: 4.825145e-01	ci left: 1.299630e-05	ci right 2.146312e-05	k: 65	n:3860000
C16orf45   3860000 perm   6401 sec   (603 perm/sec)   p_kst 1.683938e-05   p_cons 4.088122e-01   p_joint 3.730570e-05

Joint ci ratio: 3.244153e-01	ci left: 3.161762e-05	ci right 4.408637e-05	k: 145	n:3870000
Cons ci ratio: 2.396272e-03	ci left: 4.083169e-01	ci right 4.092967e-01	k: 1582082	n:3870000
KS ci ratio: 4.789000e-01	ci left: 1.318979e-05	ci right 2.169715e-05	k: 66	n:3870000
C16orf45   3870000 perm   6432 sec   (602 perm/sec)   p_kst 1.705426e-05   p_cons 4.088067e-01   p_joint 3.746770e-05

Joint ci ratio: 3.244154e-01	ci left: 3.153613e-05	ci right 4.397274e-05	k: 145	n:3880000
Cons ci ratio: 2.393151e-03	ci left: 4.083237e-01	ci right 4.093023e-01	k: 1586194	n:3880000
KS ci ratio: 4.789000e-01	ci left: 1.315580e-05	ci right 2.164123e-05	k: 66	n:3880000
C16orf45   3880000 perm   6465 sec   (600 perm/sec)   p_kst 1.701031e-05   p_cons 4.088129e-01   p_joint 3.737113e-05

Joint ci ratio: 3.233100e-01	ci left: 3.169124e-05	ci right 4.413760e-05	k: 146	n:3890000
Cons ci ratio: 2.390104e-03	ci left: 4.083181e-01	ci right 4.092954e-01	k: 1590258	n:3890000
KS ci ratio: 4.789000e-01	ci left: 1.312198e-05	ci right 2.158560e-05	k: 66	n:3890000
C16orf45   3890000 perm   6496 sec   (599 perm/sec)   p_kst 1.696658e-05   p_cons 4.088067e-01   p_joint 3.753213e-05

Joint ci ratio: 3.233100e-01	ci left: 3.160998e-05	ci right 4.402443e-05	k: 146	n:3900000
Cons ci ratio: 2.387022e-03	ci left: 4.083220e-01	ci right 4.092981e-01	k: 1594359	n:3900000
KS ci ratio: 4.789000e-01	ci left: 1.308833e-05	ci right 2.153025e-05	k: 66	n:3900000
C16orf45   3900000 perm   6529 sec   (597 perm/sec)   p_kst 1.692308e-05   p_cons 4.088100e-01   p_joint 3.743590e-05

Joint ci ratio: 3.233100e-01	ci left: 3.152913e-05	ci right 4.391183e-05	k: 146	n:3910000
Cons ci ratio: 2.383995e-03	ci left: 4.083170e-01	ci right 4.092918e-01	k: 1598425	n:3910000
KS ci ratio: 4.789001e-01	ci left: 1.305486e-05	ci right 2.147519e-05	k: 66	n:3910000
C16orf45   3910000 perm   6561 sec   (596 perm/sec)   p_kst 1.687980e-05   p_cons 4.088043e-01   p_joint 3.734015e-05

Joint ci ratio: 3.324841e-01	ci left: 2.957582e-05	ci right 4.159164e-05	k: 138	n:3920000
Cons ci ratio: 2.380951e-03	ci left: 4.083179e-01	ci right 4.092914e-01	k: 1602514	n:3920000
KS ci ratio: 4.789001e-01	ci left: 1.302155e-05	ci right 2.142041e-05	k: 66	n:3920000
C16orf45   3920000 perm   6593 sec   (595 perm/sec)   p_kst 1.683673e-05   p_cons 4.088046e-01   p_joint 3.520408e-05

Joint ci ratio: 3.720646e-01	ci left: 2.300428e-05	ci right 3.373521e-05	k: 110	n:3930000
Cons ci ratio: 2.377916e-03	ci left: 4.083192e-01	ci right 4.092916e-01	k: 1606605	n:3930000
KS ci ratio: 4.789001e-01	ci left: 1.298842e-05	ci right 2.136590e-05	k: 66	n:3930000
C16orf45   3930000 perm   6624 sec   (593 perm/sec)   p_kst 1.679389e-05   p_cons 4.088053e-01   p_joint 2.798982e-05

Joint ci ratio: 3.720646e-01	ci left: 2.294590e-05	ci right 3.364959e-05	k: 110	n:3940000
Cons ci ratio: 2.374857e-03	ci left: 4.083280e-01	ci right 4.092991e-01	k: 1610725	n:3940000
KS ci ratio: 4.789001e-01	ci left: 1.295545e-05	ci right 2.131167e-05	k: 66	n:3940000
C16orf45   3940000 perm   6655 sec   (592 perm/sec)   p_kst 1.675127e-05   p_cons 4.088135e-01   p_joint 2.791878e-05

Joint ci ratio: 3.720647e-01	ci left: 2.288781e-05	ci right 3.356440e-05	k: 110	n:3950000
Cons ci ratio: 2.371936e-03	ci left: 4.083108e-01	ci right 4.092807e-01	k: 1614743	n:3950000
KS ci ratio: 4.789001e-01	ci left: 1.292265e-05	ci right 2.125772e-05	k: 66	n:3950000
C16orf45   3950000 perm   6687 sec   (591 perm/sec)   p_kst 1.670886e-05   p_cons 4.087957e-01   p_joint 2.784810e-05

Joint ci ratio: 3.703999e-01	ci left: 2.305898e-05	ci right 3.375562e-05	k: 111	n:3960000
Cons ci ratio: 2.368843e-03	ci left: 4.083311e-01	ci right 4.092998e-01	k: 1618909	n:3960000
KS ci ratio: 4.789001e-01	ci left: 1.289002e-05	ci right 2.120404e-05	k: 66	n:3960000
C16orf45   3960000 perm   6718 sec   (589 perm/sec)   p_kst 1.666667e-05   p_cons 4.088154e-01   p_joint 2.803030e-05

Joint ci ratio: 3.703999e-01	ci left: 2.300089e-05	ci right 3.367059e-05	k: 111	n:3970000
Cons ci ratio: 2.365853e-03	ci left: 4.083327e-01	ci right 4.093002e-01	k: 1623001	n:3970000
KS ci ratio: 4.789001e-01	ci left: 1.285755e-05	ci right 2.115063e-05	k: 66	n:3970000
C16orf45   3970000 perm   6749 sec   (588 perm/sec)   p_kst 1.662469e-05   p_cons 4.088164e-01   p_joint 2.795970e-05

Joint ci ratio: 3.687573e-01	ci left: 2.317102e-05	ci right 3.386048e-05	k: 112	n:3980000
Cons ci ratio: 2.362793e-03	ci left: 4.083509e-01	ci right 4.093171e-01	k: 1627159	n:3980000
KS ci ratio: 4.753657e-01	ci left: 1.304627e-05	ci right 2.137875e-05	k: 67	n:3980000
C16orf45   3980000 perm   6781 sec   (587 perm/sec)   p_kst 1.683417e-05   p_cons 4.088339e-01   p_joint 2.814070e-05

Joint ci ratio: 3.671363e-01	ci left: 2.334040e-05	ci right 3.404932e-05	k: 113	n:3990000
Cons ci ratio: 2.359860e-03	ci left: 4.083454e-01	ci right 4.093104e-01	k: 1631223	n:3990000
KS ci ratio: 4.719084e-01	ci left: 1.323427e-05	ci right 2.160552e-05	k: 68	n:3990000
C16orf45   3990000 perm   6812 sec   (586 perm/sec)   p_kst 1.704261e-05   p_cons 4.088278e-01   p_joint 2.832080e-05

Joint ci ratio: 3.671364e-01	ci left: 2.328205e-05	ci right 3.396419e-05	k: 113	n:4000000
Cons ci ratio: 2.357028e-03	ci left: 4.083214e-01	ci right 4.092852e-01	k: 1635213	n:4000000
KS ci ratio: 4.719084e-01	ci left: 1.320119e-05	ci right 2.155150e-05	k: 68	n:4000000
C16orf45   4000000 perm   6844 sec   (584 perm/sec)   p_kst 1.700000e-05   p_cons 4.088033e-01   p_joint 2.825000e-05

Joint ci ratio: 3.671364e-01	ci left: 2.322399e-05	ci right 3.387950e-05	k: 113	n:4010000
Cons ci ratio: 2.354028e-03	ci left: 4.083342e-01	ci right 4.092968e-01	k: 1639350	n:4010000
KS ci ratio: 4.719084e-01	ci left: 1.316827e-05	ci right 2.149776e-05	k: 68	n:4010000
C16orf45   4010000 perm   6876 sec   (583 perm/sec)   p_kst 1.695761e-05   p_cons 4.088155e-01   p_joint 2.817955e-05

Joint ci ratio: 3.671364e-01	ci left: 2.316622e-05	ci right 3.379522e-05	k: 113	n:4020000
Cons ci ratio: 2.351087e-03	ci left: 4.083370e-01	ci right 4.092984e-01	k: 1643447	n:4020000
KS ci ratio: 4.719084e-01	ci left: 1.313551e-05	ci right 2.144428e-05	k: 68	n:4020000
C16orf45   4020000 perm   6907 sec   (582 perm/sec)   p_kst 1.691542e-05   p_cons 4.088177e-01   p_joint 2.810945e-05

Joint ci ratio: 3.671364e-01	ci left: 2.310874e-05	ci right 3.371136e-05	k: 113	n:4030000
Cons ci ratio: 2.348183e-03	ci left: 4.083346e-01	ci right 4.092948e-01	k: 1647523	n:4030000
KS ci ratio: 4.719084e-01	ci left: 1.310292e-05	ci right 2.139107e-05	k: 68	n:4030000
C16orf45   4030000 perm   6939 sec   (581 perm/sec)   p_kst 1.687345e-05   p_cons 4.088146e-01   p_joint 2.803970e-05

Joint ci ratio: 3.671364e-01	ci left: 2.305154e-05	ci right 3.362792e-05	k: 113	n:4040000
Cons ci ratio: 2.345320e-03	ci left: 4.083260e-01	ci right 4.092850e-01	k: 1651574	n:4040000
KS ci ratio: 4.719085e-01	ci left: 1.307048e-05	ci right 2.133812e-05	k: 68	n:4040000
C16orf45   4040000 perm   6971 sec   (580 perm/sec)   p_kst 1.683168e-05   p_cons 4.088054e-01   p_joint 2.797030e-05

Joint ci ratio: 3.655366e-01	ci left: 2.321881e-05	ci right 3.381443e-05	k: 114	n:4050000
Cons ci ratio: 2.342446e-03	ci left: 4.083216e-01	ci right 4.092795e-01	k: 1655642	n:4050000
KS ci ratio: 4.685255e-01	ci left: 1.325586e-05	ci right 2.156141e-05	k: 69	n:4050000
C16orf45   4050000 perm   7005 sec   (578 perm/sec)   p_kst 1.703704e-05   p_cons 4.088005e-01   p_joint 2.814815e-05

Joint ci ratio: 3.655367e-01	ci left: 2.316162e-05	ci right 3.373114e-05	k: 114	n:4060000
Cons ci ratio: 2.339647e-03	ci left: 4.083043e-01	ci right 4.092609e-01	k: 1659657	n:4060000
KS ci ratio: 4.685255e-01	ci left: 1.322321e-05	ci right 2.150831e-05	k: 69	n:4060000
C16orf45   4060000 perm   7036 sec   (577 perm/sec)   p_kst 1.699507e-05   p_cons 4.087825e-01   p_joint 2.807882e-05

Joint ci ratio: 3.639576e-01	ci left: 2.332789e-05	ci right 3.391639e-05	k: 115	n:4070000
Cons ci ratio: 2.336718e-03	ci left: 4.083157e-01	ci right 4.092712e-01	k: 1663789	n:4070000
KS ci ratio: 4.685255e-01	ci left: 1.319072e-05	ci right 2.145546e-05	k: 69	n:4070000
C16orf45   4070000 perm   7070 sec   (576 perm/sec)   p_kst 1.695332e-05   p_cons 4.087934e-01   p_joint 2.825553e-05

Joint ci ratio: 3.639576e-01	ci left: 2.327071e-05	ci right 3.383326e-05	k: 115	n:4080000
Cons ci ratio: 2.333891e-03	ci left: 4.083085e-01	ci right 4.092627e-01	k: 1667845	n:4080000
KS ci ratio: 4.685255e-01	ci left: 1.315839e-05	ci right 2.140287e-05	k: 69	n:4080000
C16orf45   4080000 perm   7104 sec   (574 perm/sec)   p_kst 1.691176e-05   p_cons 4.087855e-01   p_joint 2.818627e-05

Joint ci ratio: 3.623989e-01	ci left: 2.343601e-05	ci right 3.401725e-05	k: 116	n:4090000
Cons ci ratio: 2.331111e-03	ci left: 4.082934e-01	ci right 4.092465e-01	k: 1671869	n:4090000
KS ci ratio: 4.685255e-01	ci left: 1.312621e-05	ci right 2.135054e-05	k: 69	n:4090000
C16orf45   4090000 perm   7136 sec   (573 perm/sec)   p_kst 1.687042e-05   p_cons 4.087699e-01   p_joint 2.836186e-05

Joint ci ratio: 2.771791e-01	ci left: 4.202703e-05	ci right 5.576876e-05	k: 199	n:4100000
Cons ci ratio: 2.328237e-03	ci left: 4.083002e-01	ci right 4.092521e-01	k: 1675982	n:4100000
KS ci ratio: 4.652143e-01	ci left: 1.330940e-05	ci right 2.157088e-05	k: 70	n:4100000
C16orf45   4100000 perm   7170 sec   (572 perm/sec)   p_kst 1.707317e-05   p_cons 4.087761e-01   p_joint 4.853659e-05

Joint ci ratio: 2.764887e-01	ci left: 4.215120e-05	ci right 5.589322e-05	k: 200	n:4110000
Cons ci ratio: 2.325414e-03	ci left: 4.082984e-01	ci right 4.092492e-01	k: 1680060	n:4110000
KS ci ratio: 4.652143e-01	ci left: 1.327701e-05	ci right 2.151839e-05	k: 70	n:4110000
C16orf45   4110000 perm   7204 sec   (571 perm/sec)   p_kst 1.703163e-05   p_cons 4.087737e-01   p_joint 4.866180e-05

Joint ci ratio: 2.764887e-01	ci left: 4.204889e-05	ci right 5.575756e-05	k: 200	n:4120000
Cons ci ratio: 2.322616e-03	ci left: 4.082937e-01	ci right 4.092433e-01	k: 1684126	n:4120000
KS ci ratio: 4.652143e-01	ci left: 1.324479e-05	ci right 2.146616e-05	k: 70	n:4120000
C16orf45   4120000 perm   7237 sec   (569 perm/sec)   p_kst 1.699029e-05   p_cons 4.087684e-01   p_joint 4.854369e-05

Joint ci ratio: 2.758035e-01	ci left: 4.217244e-05	ci right 5.588141e-05	k: 201	n:4130000
Cons ci ratio: 2.319752e-03	ci left: 4.083048e-01	ci right 4.092532e-01	k: 1688257	n:4130000
KS ci ratio: 4.652144e-01	ci left: 1.321272e-05	ci right 2.141419e-05	k: 70	n:4130000
C16orf45   4130000 perm   7271 sec   (568 perm/sec)   p_kst 1.694915e-05   p_cons 4.087789e-01   p_joint 4.866828e-05

Joint ci ratio: 2.758035e-01	ci left: 4.207058e-05	ci right 5.574643e-05	k: 201	n:4140000
Cons ci ratio: 2.316877e-03	ci left: 4.083204e-01	ci right 4.092677e-01	k: 1692407	n:4140000
KS ci ratio: 4.652144e-01	ci left: 1.318080e-05	ci right 2.136246e-05	k: 70	n:4140000
C16orf45   4140000 perm   7306 sec   (567 perm/sec)   p_kst 1.690821e-05   p_cons 4.087940e-01   p_joint 4.855072e-05

Joint ci ratio: 2.758035e-01	ci left: 4.196920e-05	ci right 5.561210e-05	k: 201	n:4150000
Cons ci ratio: 2.314081e-03	ci left: 4.083214e-01	ci right 4.092676e-01	k: 1696497	n:4150000
KS ci ratio: 4.652144e-01	ci left: 1.314904e-05	ci right 2.131099e-05	k: 70	n:4150000
C16orf45   4150000 perm   7340 sec   (565 perm/sec)   p_kst 1.686747e-05   p_cons 4.087945e-01   p_joint 4.843373e-05

Joint ci ratio: 2.758035e-01	ci left: 4.186831e-05	ci right 5.547842e-05	k: 201	n:4160000
Cons ci ratio: 2.311362e-03	ci left: 4.083085e-01	ci right 4.092536e-01	k: 1700529	n:4160000
KS ci ratio: 4.652144e-01	ci left: 1.311743e-05	ci right 2.125976e-05	k: 70	n:4160000
C16orf45   4160000 perm   7377 sec   (564 perm/sec)   p_kst 1.682692e-05   p_cons 4.087810e-01   p_joint 4.831731e-05

Joint ci ratio: 2.758035e-01	ci left: 4.176791e-05	ci right 5.534538e-05	k: 201	n:4170000
Cons ci ratio: 2.308678e-03	ci left: 4.082905e-01	ci right 4.092344e-01	k: 1704539	n:4170000
KS ci ratio: 4.652144e-01	ci left: 1.308598e-05	ci right 2.120878e-05	k: 70	n:4170000
C16orf45   4170000 perm   7412 sec   (563 perm/sec)   p_kst 1.678657e-05   p_cons 4.087624e-01   p_joint 4.820144e-05

Joint ci ratio: 2.751233e-01	ci left: 4.189070e-05	ci right 5.546869e-05	k: 202	n:4180000
Cons ci ratio: 2.305871e-03	ci left: 4.083002e-01	ci right 4.092430e-01	k: 1708665	n:4180000
KS ci ratio: 4.652144e-01	ci left: 1.305467e-05	ci right 2.115804e-05	k: 70	n:4180000
C16orf45   4180000 perm   7447 sec   (561 perm/sec)   p_kst 1.674641e-05   p_cons 4.087715e-01   p_joint 4.832536e-05

Joint ci ratio: 2.751234e-01	ci left: 4.179072e-05	ci right 5.533631e-05	k: 202	n:4190000
Cons ci ratio: 2.303163e-03	ci left: 4.082913e-01	ci right 4.092329e-01	k: 1712713	n:4190000
KS ci ratio: 4.652144e-01	ci left: 1.302352e-05	ci right 2.110754e-05	k: 70	n:4190000
C16orf45   4190000 perm   7481 sec   (560 perm/sec)   p_kst 1.670644e-05   p_cons 4.087621e-01   p_joint 4.821002e-05

Joint ci ratio: 2.744482e-01	ci left: 4.191291e-05	ci right 5.545901e-05	k: 203	n:4200000
Cons ci ratio: 2.300379e-03	ci left: 4.083005e-01	ci right 4.092411e-01	k: 1716837	n:4200000
KS ci ratio: 4.652144e-01	ci left: 1.299251e-05	ci right 2.105728e-05	k: 70	n:4200000
C16orf45   4200000 perm   7516 sec   (559 perm/sec)   p_kst 1.666667e-05   p_cons 4.087707e-01   p_joint 4.833333e-05

Joint ci ratio: 2.744482e-01	ci left: 4.181336e-05	ci right 5.532728e-05	k: 203	n:4210000
Cons ci ratio: 2.297570e-03	ci left: 4.083168e-01	ci right 4.092562e-01	k: 1720991	n:4210000
KS ci ratio: 4.652144e-01	ci left: 1.296165e-05	ci right 2.100727e-05	k: 70	n:4210000
C16orf45   4210000 perm   7550 sec   (558 perm/sec)   p_kst 1.662708e-05   p_cons 4.087865e-01   p_joint 4.821853e-05

Joint ci ratio: 2.744482e-01	ci left: 4.171427e-05	ci right 5.519617e-05	k: 203	n:4220000
Cons ci ratio: 2.294867e-03	ci left: 4.083129e-01	ci right 4.092512e-01	k: 1725060	n:4220000
KS ci ratio: 4.652144e-01	ci left: 1.293093e-05	ci right 2.095749e-05	k: 70	n:4220000
C16orf45   4220000 perm   7583 sec   (556 perm/sec)   p_kst 1.658768e-05   p_cons 4.087820e-01   p_joint 4.810427e-05

Joint ci ratio: 2.744482e-01	ci left: 4.161566e-05	ci right 5.506569e-05	k: 203	n:4230000
Cons ci ratio: 2.292190e-03	ci left: 4.083057e-01	ci right 4.092429e-01	k: 1729115	n:4230000
KS ci ratio: 4.652145e-01	ci left: 1.290036e-05	ci right 2.090794e-05	k: 70	n:4230000
C16orf45   4230000 perm   7617 sec   (555 perm/sec)   p_kst 1.654846e-05   p_cons 4.087742e-01   p_joint 4.799054e-05

Joint ci ratio: 2.744483e-01	ci left: 4.151751e-05	ci right 5.493581e-05	k: 203	n:4240000
Cons ci ratio: 2.289491e-03	ci left: 4.083051e-01	ci right 4.092412e-01	k: 1733198	n:4240000
KS ci ratio: 4.652145e-01	ci left: 1.286994e-05	ci right 2.085863e-05	k: 70	n:4240000
C16orf45   4240000 perm   7652 sec   (554 perm/sec)   p_kst 1.650943e-05   p_cons 4.087731e-01   p_joint 4.787736e-05

Joint ci ratio: 2.744483e-01	ci left: 4.141982e-05	ci right 5.480655e-05	k: 203	n:4250000
Cons ci ratio: 2.286833e-03	ci left: 4.082977e-01	ci right 4.092327e-01	k: 1737252	n:4250000
KS ci ratio: 4.652145e-01	ci left: 1.283965e-05	ci right 2.080955e-05	k: 70	n:4250000
C16orf45   4250000 perm   7686 sec   (553 perm/sec)   p_kst 1.647059e-05   p_cons 4.087652e-01   p_joint 4.776471e-05

Joint ci ratio: 2.744483e-01	ci left: 4.132259e-05	ci right 5.467790e-05	k: 203	n:4260000
Cons ci ratio: 2.284132e-03	ci left: 4.083017e-01	ci right 4.092356e-01	k: 1741354	n:4260000
KS ci ratio: 4.652145e-01	ci left: 1.280951e-05	ci right 2.076070e-05	k: 70	n:4260000
C16orf45   4260000 perm   7721 sec   (552 perm/sec)   p_kst 1.643192e-05   p_cons 4.087685e-01   p_joint 4.765258e-05

Joint ci ratio: 2.744483e-01	ci left: 4.122581e-05	ci right 5.454985e-05	k: 203	n:4270000
Cons ci ratio: 2.281485e-03	ci left: 4.082960e-01	ci right 4.092288e-01	k: 1745415	n:4270000
KS ci ratio: 4.652145e-01	ci left: 1.277951e-05	ci right 2.071208e-05	k: 70	n:4270000
C16orf45   4270000 perm   7755 sec   (551 perm/sec)   p_kst 1.639344e-05   p_cons 4.087623e-01   p_joint 4.754098e-05

Joint ci ratio: 2.744483e-01	ci left: 4.112949e-05	ci right 5.442240e-05	k: 203	n:4280000
Cons ci ratio: 2.278811e-03	ci left: 4.082980e-01	ci right 4.092297e-01	k: 1749509	n:4280000
KS ci ratio: 4.652145e-01	ci left: 1.274966e-05	ci right 2.066369e-05	k: 70	n:4280000
C16orf45   4280000 perm   7789 sec   (550 perm/sec)   p_kst 1.635514e-05   p_cons 4.087638e-01   p_joint 4.742991e-05

Joint ci ratio: 2.744483e-01	ci left: 4.103362e-05	ci right 5.429554e-05	k: 203	n:4290000
Cons ci ratio: 2.276224e-03	ci left: 4.082835e-01	ci right 4.092141e-01	k: 1753532	n:4290000
KS ci ratio: 4.652145e-01	ci left: 1.271994e-05	ci right 2.061552e-05	k: 70	n:4290000
C16orf45   4290000 perm   7822 sec   (548 perm/sec)   p_kst 1.631702e-05   p_cons 4.087487e-01   p_joint 4.731935e-05

Joint ci ratio: 2.744484e-01	ci left: 4.093819e-05	ci right 5.416927e-05	k: 203	n:4300000
Cons ci ratio: 2.273632e-03	ci left: 4.082720e-01	ci right 4.092016e-01	k: 1757568	n:4300000
KS ci ratio: 4.652145e-01	ci left: 1.269035e-05	ci right 2.056758e-05	k: 70	n:4300000
C16orf45   4300000 perm   7857 sec   (547 perm/sec)   p_kst 1.627907e-05   p_cons 4.087367e-01   p_joint 4.720930e-05

Joint ci ratio: 2.737781e-01	ci left: 4.105928e-05	ci right 5.429151e-05	k: 204	n:4310000
Cons ci ratio: 2.271089e-03	ci left: 4.082523e-01	ci right 4.091808e-01	k: 1761568	n:4310000
KS ci ratio: 4.652145e-01	ci left: 1.266091e-05	ci right 2.051986e-05	k: 70	n:4310000
C16orf45   4310000 perm   7892 sec   (546 perm/sec)   p_kst 1.624130e-05   p_cons 4.087165e-01   p_joint 4.733179e-05

Joint ci ratio: 2.731128e-01	ci left: 4.117985e-05	ci right 5.441315e-05	k: 205	n:4320000
Cons ci ratio: 2.268433e-03	ci left: 4.082584e-01	ci right 4.091857e-01	k: 1765679	n:4320000
KS ci ratio: 4.652145e-01	ci left: 1.263160e-05	ci right 2.047236e-05	k: 70	n:4320000
C16orf45   4320000 perm   7926 sec   (545 perm/sec)   p_kst 1.620370e-05   p_cons 4.087220e-01   p_joint 4.745370e-05

Joint ci ratio: 2.724523e-01	ci left: 4.129990e-05	ci right 5.453419e-05	k: 206	n:4330000
Cons ci ratio: 2.265762e-03	ci left: 4.082695e-01	ci right 4.091958e-01	k: 1769812	n:4330000
KS ci ratio: 4.652145e-01	ci left: 1.260243e-05	ci right 2.042508e-05	k: 70	n:4330000
C16orf45   4330000 perm   7962 sec   (544 perm/sec)   p_kst 1.616628e-05   p_cons 4.087326e-01   p_joint 4.757506e-05

Joint ci ratio: 2.724523e-01	ci left: 4.120474e-05	ci right 5.440853e-05	k: 206	n:4340000
Cons ci ratio: 2.263178e-03	ci left: 4.082642e-01	ci right 4.091894e-01	k: 1773874	n:4340000
KS ci ratio: 4.652146e-01	ci left: 1.257339e-05	ci right 2.037802e-05	k: 70	n:4340000
C16orf45   4340000 perm   7997 sec   (543 perm/sec)   p_kst 1.612903e-05   p_cons 4.087267e-01   p_joint 4.746544e-05

Joint ci ratio: 2.724523e-01	ci left: 4.111001e-05	ci right 5.428346e-05	k: 206	n:4350000
Cons ci ratio: 2.260556e-03	ci left: 4.082688e-01	ci right 4.091930e-01	k: 1777979	n:4350000
KS ci ratio: 4.652146e-01	ci left: 1.254449e-05	ci right 2.033117e-05	k: 70	n:4350000
C16orf45   4350000 perm   8031 sec   (542 perm/sec)   p_kst 1.609195e-05   p_cons 4.087308e-01   p_joint 4.735632e-05

Joint ci ratio: 2.724523e-01	ci left: 4.101572e-05	ci right 5.415895e-05	k: 206	n:4360000
Cons ci ratio: 2.258048e-03	ci left: 4.082509e-01	ci right 4.091740e-01	k: 1781986	n:4360000
KS ci ratio: 4.652146e-01	ci left: 1.251572e-05	ci right 2.028454e-05	k: 70	n:4360000
C16orf45   4360000 perm   8075 sec   (540 perm/sec)   p_kst 1.605505e-05   p_cons 4.087124e-01   p_joint 4.724771e-05

Joint ci ratio: 2.724524e-01	ci left: 4.092187e-05	ci right 5.403502e-05	k: 206	n:4370000
Cons ci ratio: 2.255484e-03	ci left: 4.082468e-01	ci right 4.091689e-01	k: 1786053	n:4370000
KS ci ratio: 4.652146e-01	ci left: 1.248708e-05	ci right 2.023812e-05	k: 70	n:4370000
C16orf45   4370000 perm   8112 sec   (539 perm/sec)   p_kst 1.601831e-05   p_cons 4.087078e-01   p_joint 4.713959e-05

Joint ci ratio: 2.724524e-01	ci left: 4.082844e-05	ci right 5.391165e-05	k: 206	n:4380000
Cons ci ratio: 2.252927e-03	ci left: 4.082432e-01	ci right 4.091642e-01	k: 1790122	n:4380000
KS ci ratio: 4.652146e-01	ci left: 1.245857e-05	ci right 2.019192e-05	k: 70	n:4380000
C16orf45   4380000 perm   8148 sec   (538 perm/sec)   p_kst 1.598174e-05   p_cons 4.087037e-01   p_joint 4.703196e-05

Joint ci ratio: 2.717966e-01	ci left: 4.094768e-05	ci right 5.403214e-05	k: 207	n:4390000
Cons ci ratio: 2.250340e-03	ci left: 4.082481e-01	ci right 4.091680e-01	k: 1794228	n:4390000
KS ci ratio: 4.619726e-01	ci left: 1.263136e-05	ci right 2.040015e-05	k: 71	n:4390000
C16orf45   4390000 perm   8183 sec   (536 perm/sec)   p_kst 1.617312e-05   p_cons 4.087080e-01   p_joint 4.715262e-05

Joint ci ratio: 2.717966e-01	ci left: 4.085462e-05	ci right 5.390934e-05	k: 207	n:4400000
Cons ci ratio: 2.247747e-03	ci left: 4.082558e-01	ci right 4.091747e-01	k: 1798347	n:4400000
KS ci ratio: 4.619726e-01	ci left: 1.260265e-05	ci right 2.035378e-05	k: 71	n:4400000
C16orf45   4400000 perm   8218 sec   (535 perm/sec)   p_kst 1.613636e-05   p_cons 4.087152e-01   p_joint 4.704545e-05

Joint ci ratio: 2.711456e-01	ci left: 4.097330e-05	ci right 5.402925e-05	k: 208	n:4410000
Cons ci ratio: 2.245222e-03	ci left: 4.082511e-01	ci right 4.091690e-01	k: 1802411	n:4410000
KS ci ratio: 4.587974e-01	ci left: 1.277453e-05	ci right 2.056052e-05	k: 72	n:4410000
C16orf45   4410000 perm   8255 sec   (534 perm/sec)   p_kst 1.632653e-05   p_cons 4.087100e-01   p_joint 4.716553e-05

Joint ci ratio: 2.711456e-01	ci left: 4.088060e-05	ci right 5.390701e-05	k: 208	n:4420000
Cons ci ratio: 2.242607e-03	ci left: 4.082674e-01	ci right 4.091843e-01	k: 1806568	n:4420000
KS ci ratio: 4.587975e-01	ci left: 1.274562e-05	ci right 2.051400e-05	k: 72	n:4420000
C16orf45   4420000 perm   8290 sec   (533 perm/sec)   p_kst 1.628959e-05   p_cons 4.087258e-01   p_joint 4.705882e-05

Joint ci ratio: 2.698575e-01	ci left: 4.120918e-05	ci right 5.426734e-05	k: 210	n:4430000
Cons ci ratio: 2.240070e-03	ci left: 4.082690e-01	ci right 4.091848e-01	k: 1810660	n:4430000
KS ci ratio: 4.587975e-01	ci left: 1.271685e-05	ci right 2.046770e-05	k: 72	n:4430000
C16orf45   4430000 perm   8325 sec   (532 perm/sec)   p_kst 1.625282e-05   p_cons 4.087269e-01   p_joint 4.740406e-05

Joint ci ratio: 2.698575e-01	ci left: 4.111636e-05	ci right 5.414511e-05	k: 210	n:4440000
Cons ci ratio: 2.237517e-03	ci left: 4.082758e-01	ci right 4.091905e-01	k: 1814775	n:4440000
KS ci ratio: 4.587975e-01	ci left: 1.268821e-05	ci right 2.042160e-05	k: 72	n:4440000
C16orf45   4440000 perm   8361 sec   (531 perm/sec)   p_kst 1.621622e-05   p_cons 4.087331e-01   p_joint 4.729730e-05

Joint ci ratio: 2.692203e-01	ci left: 4.123350e-05	ci right 5.426331e-05	k: 211	n:4450000
Cons ci ratio: 2.234996e-03	ci left: 4.082774e-01	ci right 4.091911e-01	k: 1818867	n:4450000
KS ci ratio: 4.587975e-01	ci left: 1.265970e-05	ci right 2.037571e-05	k: 72	n:4450000
C16orf45   4450000 perm   8395 sec   (530 perm/sec)   p_kst 1.617978e-05   p_cons 4.087342e-01   p_joint 4.741573e-05

Joint ci ratio: 2.692203e-01	ci left: 4.114105e-05	ci right 5.414164e-05	k: 211	n:4460000
Cons ci ratio: 2.232664e-03	ci left: 4.082401e-01	ci right 4.091528e-01	k: 1822786	n:4460000
KS ci ratio: 4.587975e-01	ci left: 1.263131e-05	ci right 2.033002e-05	k: 72	n:4460000
C16orf45   4460000 perm   8430 sec   (529 perm/sec)   p_kst 1.614350e-05   p_cons 4.086964e-01   p_joint 4.730942e-05

Joint ci ratio: 2.685875e-01	ci left: 4.125764e-05	ci right 5.425928e-05	k: 212	n:4470000
Cons ci ratio: 2.230254e-03	ci left: 4.082214e-01	ci right 4.091331e-01	k: 1826787	n:4470000
KS ci ratio: 4.556869e-01	ci left: 1.280099e-05	ci right 2.053386e-05	k: 73	n:4470000
C16orf45   4470000 perm   8466 sec   (528 perm/sec)   p_kst 1.633110e-05   p_cons 4.086772e-01   p_joint 4.742729e-05

Joint ci ratio: 2.679593e-01	ci left: 4.137376e-05	ci right 5.437635e-05	k: 213	n:4480000
Cons ci ratio: 2.227770e-03	ci left: 4.082204e-01	ci right 4.091310e-01	k: 1830867	n:4480000
KS ci ratio: 4.526388e-01	ci left: 1.297009e-05	ci right 2.073661e-05	k: 74	n:4480000
C16orf45   4480000 perm   8501 sec   (527 perm/sec)   p_kst 1.651786e-05   p_cons 4.086757e-01   p_joint 4.754464e-05

Joint ci ratio: 2.679593e-01	ci left: 4.128161e-05	ci right 5.425525e-05	k: 213	n:4490000
Cons ci ratio: 2.225251e-03	ci left: 4.082290e-01	ci right 4.091386e-01	k: 1834990	n:4490000
KS ci ratio: 4.526388e-01	ci left: 1.294121e-05	ci right 2.069043e-05	k: 74	n:4490000
C16orf45   4490000 perm   8537 sec   (526 perm/sec)   p_kst 1.648107e-05   p_cons 4.086837e-01   p_joint 4.743875e-05

Joint ci ratio: 2.679593e-01	ci left: 4.118987e-05	ci right 5.413468e-05	k: 213	n:4500000
Cons ci ratio: 2.222742e-03	ci left: 4.082371e-01	ci right 4.091457e-01	k: 1839111	n:4500000
KS ci ratio: 4.526388e-01	ci left: 1.291245e-05	ci right 2.064445e-05	k: 74	n:4500000
C16orf45   4500000 perm   8573 sec   (525 perm/sec)   p_kst 1.644444e-05   p_cons 4.086913e-01   p_joint 4.733333e-05

Joint ci ratio: 2.679593e-01	ci left: 4.109854e-05	ci right 5.401465e-05	k: 213	n:4510000
Cons ci ratio: 2.220280e-03	ci left: 4.082367e-01	ci right 4.091443e-01	k: 1843194	n:4510000
KS ci ratio: 4.526388e-01	ci left: 1.288382e-05	ci right 2.059868e-05	k: 74	n:4510000
C16orf45   4510000 perm   8609 sec   (524 perm/sec)   p_kst 1.640798e-05   p_cons 4.086905e-01   p_joint 4.722838e-05

Joint ci ratio: 2.679593e-01	ci left: 4.100761e-05	ci right 5.389515e-05	k: 213	n:4520000
Cons ci ratio: 2.217794e-03	ci left: 4.082434e-01	ci right 4.091500e-01	k: 1847309	n:4520000
KS ci ratio: 4.526388e-01	ci left: 1.285531e-05	ci right 2.055310e-05	k: 74	n:4520000
C16orf45   4520000 perm   8644 sec   (523 perm/sec)   p_kst 1.637168e-05   p_cons 4.086967e-01   p_joint 4.712389e-05

Joint ci ratio: 2.881982e-01	ci left: 3.496107e-05	ci right 4.692977e-05	k: 184	n:4530000
Cons ci ratio: 2.215396e-03	ci left: 4.082329e-01	ci right 4.091385e-01	k: 1851346	n:4530000
KS ci ratio: 4.496510e-01	ci left: 1.302260e-05	ci right 2.075341e-05	k: 75	n:4530000
C16orf45   4530000 perm   8680 sec   (522 perm/sec)   p_kst 1.655629e-05   p_cons 4.086857e-01   p_joint 4.061810e-05

Joint ci ratio: 2.881982e-01	ci left: 3.488406e-05	ci right 4.682640e-05	k: 184	n:4540000
Cons ci ratio: 2.213026e-03	ci left: 4.082178e-01	ci right 4.091224e-01	k: 1855362	n:4540000
KS ci ratio: 4.496510e-01	ci left: 1.299391e-05	ci right 2.070770e-05	k: 75	n:4540000
C16orf45   4540000 perm   8717 sec   (521 perm/sec)   p_kst 1.651982e-05   p_cons 4.086700e-01   p_joint 4.052863e-05

Joint ci ratio: 2.881982e-01	ci left: 3.480739e-05	ci right 4.672349e-05	k: 184	n:4550000
Cons ci ratio: 2.210590e-03	ci left: 4.082188e-01	ci right 4.091224e-01	k: 1859451	n:4550000
KS ci ratio: 4.496510e-01	ci left: 1.296535e-05	ci right 2.066219e-05	k: 75	n:4550000
C16orf45   4550000 perm   8753 sec   (520 perm/sec)   p_kst 1.648352e-05   p_cons 4.086705e-01   p_joint 4.043956e-05

Joint ci ratio: 2.881983e-01	ci left: 3.473106e-05	ci right 4.662103e-05	k: 184	n:4560000
Cons ci ratio: 2.208177e-03	ci left: 4.082167e-01	ci right 4.091193e-01	k: 1863526	n:4560000
KS ci ratio: 4.496510e-01	ci left: 1.293692e-05	ci right 2.061688e-05	k: 75	n:4560000
C16orf45   4560000 perm   8789 sec   (519 perm/sec)   p_kst 1.644737e-05   p_cons 4.086680e-01   p_joint 4.035088e-05

Joint ci ratio: 2.874225e-01	ci left: 3.485809e-05	ci right 4.675358e-05	k: 185	n:4570000
Cons ci ratio: 2.205702e-03	ci left: 4.082298e-01	ci right 4.091314e-01	k: 1867670	n:4570000
KS ci ratio: 4.496511e-01	ci left: 1.290861e-05	ci right 2.057176e-05	k: 75	n:4570000
C16orf45   4570000 perm   8825 sec   (518 perm/sec)   p_kst 1.641138e-05   p_cons 4.086805e-01   p_joint 4.048140e-05

Joint ci ratio: 2.866529e-01	ci left: 3.498460e-05	ci right 4.688551e-05	k: 186	n:4580000
Cons ci ratio: 2.203351e-03	ci left: 4.082176e-01	ci right 4.091183e-01	k: 1871699	n:4580000
KS ci ratio: 4.496511e-01	ci left: 1.288043e-05	ci right 2.052685e-05	k: 75	n:4580000
C16orf45   4580000 perm   8861 sec   (517 perm/sec)   p_kst 1.637555e-05   p_cons 4.086679e-01   p_joint 4.061135e-05

Joint ci ratio: 2.866529e-01	ci left: 3.490838e-05	ci right 4.678337e-05	k: 186	n:4590000
Cons ci ratio: 2.200963e-03	ci left: 4.082152e-01	ci right 4.091148e-01	k: 1875772	n:4590000
KS ci ratio: 4.496511e-01	ci left: 1.285236e-05	ci right 2.048213e-05	k: 75	n:4590000
C16orf45   4590000 perm   8898 sec   (516 perm/sec)   p_kst 1.633987e-05   p_cons 4.086649e-01   p_joint 4.052288e-05

Joint ci ratio: 2.866529e-01	ci left: 3.483249e-05	ci right 4.668167e-05	k: 186	n:4600000
Cons ci ratio: 2.198581e-03	ci left: 4.082131e-01	ci right 4.091118e-01	k: 1879847	n:4600000
KS ci ratio: 4.496511e-01	ci left: 1.282442e-05	ci right 2.043760e-05	k: 75	n:4600000
C16orf45   4600000 perm   8934 sec   (515 perm/sec)   p_kst 1.630435e-05   p_cons 4.086624e-01   p_joint 4.043478e-05

Joint ci ratio: 2.866529e-01	ci left: 3.475693e-05	ci right 4.658040e-05	k: 186	n:4610000
Cons ci ratio: 2.196299e-03	ci left: 4.081907e-01	ci right 4.090884e-01	k: 1883828	n:4610000
KS ci ratio: 4.496511e-01	ci left: 1.279661e-05	ci right 2.039327e-05	k: 75	n:4610000
C16orf45   4610000 perm   8969 sec   (514 perm/sec)   p_kst 1.626898e-05   p_cons 4.086395e-01   p_joint 4.034707e-05

Joint ci ratio: 2.851322e-01	ci left: 3.508357e-05	ci right 4.694343e-05	k: 188	n:4620000
Cons ci ratio: 2.193871e-03	ci left: 4.082021e-01	ci right 4.090989e-01	k: 1887965	n:4620000
KS ci ratio: 4.438488e-01	ci left: 1.315309e-05	ci right 2.083043e-05	k: 77	n:4620000
C16orf45   4620000 perm   9007 sec   (513 perm/sec)   p_kst 1.666667e-05   p_cons 4.086504e-01   p_joint 4.069264e-05

Joint ci ratio: 2.843808e-01	ci left: 3.520835e-05	ci right 4.707341e-05	k: 189	n:4630000
Cons ci ratio: 2.191410e-03	ci left: 4.082226e-01	ci right 4.091183e-01	k: 1892144	n:4630000
KS ci ratio: 4.438488e-01	ci left: 1.312469e-05	ci right 2.078544e-05	k: 77	n:4630000
C16orf45   4630000 perm   9044 sec   (512 perm/sec)   p_kst 1.663067e-05   p_cons 4.086704e-01   p_joint 4.082073e-05

Joint ci ratio: 2.843808e-01	ci left: 3.513247e-05	ci right 4.697196e-05	k: 189	n:4640000
Cons ci ratio: 2.189007e-03	ci left: 4.082320e-01	ci right 4.091268e-01	k: 1896272	n:4640000
KS ci ratio: 4.438488e-01	ci left: 1.309640e-05	ci right 2.074064e-05	k: 77	n:4640000
C16orf45   4640000 perm   9080 sec   (511 perm/sec)   p_kst 1.659483e-05   p_cons 4.086793e-01   p_joint 4.073276e-05

Joint ci ratio: 2.843808e-01	ci left: 3.505692e-05	ci right 4.687094e-05	k: 189	n:4650000
Cons ci ratio: 2.186619e-03	ci left: 4.082396e-01	ci right 4.091334e-01	k: 1900392	n:4650000
KS ci ratio: 4.438488e-01	ci left: 1.306824e-05	ci right 2.069604e-05	k: 77	n:4650000
C16orf45   4650000 perm   9118 sec   (510 perm/sec)   p_kst 1.655914e-05   p_cons 4.086865e-01   p_joint 4.064516e-05

Joint ci ratio: 2.843809e-01	ci left: 3.498169e-05	ci right 4.677036e-05	k: 189	n:4660000
Cons ci ratio: 2.184229e-03	ci left: 4.082495e-01	ci right 4.091424e-01	k: 1904523	n:4660000
KS ci ratio: 4.438488e-01	ci left: 1.304019e-05	ci right 2.065163e-05	k: 77	n:4660000
C16orf45   4660000 perm   9155 sec   (509 perm/sec)   p_kst 1.652361e-05   p_cons 4.086959e-01   p_joint 4.055794e-05

Joint ci ratio: 2.843809e-01	ci left: 3.490678e-05	ci right 4.667021e-05	k: 189	n:4670000
Cons ci ratio: 2.181856e-03	ci left: 4.082575e-01	ci right 4.091494e-01	k: 1908645	n:4670000
KS ci ratio: 4.438488e-01	ci left: 1.301227e-05	ci right 2.060741e-05	k: 77	n:4670000
C16orf45   4670000 perm   9191 sec   (508 perm/sec)   p_kst 1.648822e-05   p_cons 4.087034e-01   p_joint 4.047109e-05

Joint ci ratio: 2.836354e-01	ci left: 3.503065e-05	ci right 4.679934e-05	k: 190	n:4680000
Cons ci ratio: 2.179544e-03	ci left: 4.082535e-01	ci right 4.091445e-01	k: 1912711	n:4680000
KS ci ratio: 4.410307e-01	ci left: 1.317433e-05	ci right 2.080071e-05	k: 78	n:4680000
C16orf45   4680000 perm   9229 sec   (507 perm/sec)   p_kst 1.666667e-05   p_cons 4.086989e-01   p_joint 4.059829e-05

Joint ci ratio: 2.828958e-01	ci left: 3.515404e-05	ci right 4.692788e-05	k: 191	n:4690000
Cons ci ratio: 2.177259e-03	ci left: 4.082450e-01	ci right 4.091350e-01	k: 1916756	n:4690000
KS ci ratio: 4.410307e-01	ci left: 1.314624e-05	ci right 2.075636e-05	k: 78	n:4690000
C16orf45   4690000 perm   9266 sec   (506 perm/sec)   p_kst 1.663113e-05   p_cons 4.086900e-01   p_joint 4.072495e-05

Joint ci ratio: 2.821620e-01	ci left: 3.527693e-05	ci right 4.705584e-05	k: 192	n:4700000
Cons ci ratio: 2.174816e-03	ci left: 4.082734e-01	ci right 4.091625e-01	k: 1920974	n:4700000
KS ci ratio: 4.410307e-01	ci left: 1.311827e-05	ci right 2.071220e-05	k: 78	n:4700000
C16orf45   4700000 perm   9304 sec   (505 perm/sec)   p_kst 1.659574e-05   p_cons 4.087179e-01   p_joint 4.085106e-05

Joint ci ratio: 2.821620e-01	ci left: 3.520203e-05	ci right 4.695593e-05	k: 192	n:4710000
Cons ci ratio: 2.172578e-03	ci left: 4.082579e-01	ci right 4.091460e-01	k: 1924986	n:4710000
KS ci ratio: 4.410307e-01	ci left: 1.309042e-05	ci right 2.066822e-05	k: 78	n:4710000
C16orf45   4710000 perm   9341 sec   (504 perm/sec)   p_kst 1.656051e-05   p_cons 4.087019e-01   p_joint 4.076433e-05

Joint ci ratio: 2.938109e-01	ci left: 3.217891e-05	ci right 4.344968e-05	k: 177	n:4720000
Cons ci ratio: 2.170179e-03	ci left: 4.082798e-01	ci right 4.091670e-01	k: 1929174	n:4720000
KS ci ratio: 4.410307e-01	ci left: 1.306268e-05	ci right 2.062443e-05	k: 78	n:4720000
C16orf45   4720000 perm   9379 sec   (503 perm/sec)   p_kst 1.652542e-05   p_cons 4.087233e-01   p_joint 3.750000e-05

Joint ci ratio: 2.938109e-01	ci left: 3.211088e-05	ci right 4.335782e-05	k: 177	n:4730000
Cons ci ratio: 2.167910e-03	ci left: 4.082745e-01	ci right 4.091607e-01	k: 1933234	n:4730000
KS ci ratio: 4.410307e-01	ci left: 1.303507e-05	ci right 2.058083e-05	k: 78	n:4730000
C16orf45   4730000 perm   9418 sec   (502 perm/sec)   p_kst 1.649049e-05   p_cons 4.087175e-01   p_joint 3.742072e-05

Joint ci ratio: 2.938109e-01	ci left: 3.204313e-05	ci right 4.326634e-05	k: 177	n:4740000
Cons ci ratio: 2.165626e-03	ci left: 4.082741e-01	ci right 4.091594e-01	k: 1937317	n:4740000
KS ci ratio: 4.410307e-01	ci left: 1.300757e-05	ci right 2.053741e-05	k: 78	n:4740000
C16orf45   4740000 perm   9456 sec   (501 perm/sec)   p_kst 1.645570e-05   p_cons 4.087167e-01   p_joint 3.734177e-05

Joint ci ratio: 2.929890e-01	ci left: 3.217071e-05	ci right 4.340123e-05	k: 178	n:4750000
Cons ci ratio: 2.163318e-03	ci left: 4.082806e-01	ci right 4.091650e-01	k: 1941433	n:4750000
KS ci ratio: 4.410307e-01	ci left: 1.298018e-05	ci right 2.049418e-05	k: 78	n:4750000
C16orf45   4750000 perm   9494 sec   (500 perm/sec)   p_kst 1.642105e-05   p_cons 4.087227e-01   p_joint 3.747368e-05

Joint ci ratio: 2.929890e-01	ci left: 3.210312e-05	ci right 4.331005e-05	k: 178	n:4760000
Cons ci ratio: 2.161042e-03	ci left: 4.082814e-01	ci right 4.091649e-01	k: 1945522	n:4760000
KS ci ratio: 4.410308e-01	ci left: 1.295291e-05	ci right 2.045112e-05	k: 78	n:4760000
C16orf45   4760000 perm   9532 sec   (499 perm/sec)   p_kst 1.638655e-05   p_cons 4.087231e-01   p_joint 3.739496e-05

Joint ci ratio: 2.929890e-01	ci left: 3.203582e-05	ci right 4.321926e-05	k: 178	n:4770000
Cons ci ratio: 2.158703e-03	ci left: 4.082982e-01	ci right 4.091807e-01	k: 1949687	n:4770000
KS ci ratio: 4.410308e-01	ci left: 1.292576e-05	ci right 2.040825e-05	k: 78	n:4770000
C16orf45   4770000 perm   9569 sec   (498 perm/sec)   p_kst 1.635220e-05   p_cons 4.087394e-01   p_joint 3.731656e-05

Joint ci ratio: 2.929890e-01	ci left: 3.196880e-05	ci right 4.312884e-05	k: 178	n:4780000
Cons ci ratio: 2.156472e-03	ci left: 4.082923e-01	ci right 4.091739e-01	k: 1953744	n:4780000
KS ci ratio: 4.410308e-01	ci left: 1.289872e-05	ci right 2.036555e-05	k: 78	n:4780000
C16orf45   4780000 perm   9607 sec   (498 perm/sec)   p_kst 1.631799e-05   p_cons 4.087331e-01   p_joint 3.723849e-05

Joint ci ratio: 2.929891e-01	ci left: 3.190206e-05	ci right 4.303880e-05	k: 178	n:4790000
Cons ci ratio: 2.154176e-03	ci left: 4.083027e-01	ci right 4.091834e-01	k: 1957879	n:4790000
KS ci ratio: 4.410308e-01	ci left: 1.287179e-05	ci right 2.032303e-05	k: 78	n:4790000
C16orf45   4790000 perm   9650 sec   (496 perm/sec)   p_kst 1.628392e-05   p_cons 4.087430e-01   p_joint 3.716075e-05

Joint ci ratio: 2.929891e-01	ci left: 3.183559e-05	ci right 4.294914e-05	k: 178	n:4800000
Cons ci ratio: 2.151901e-03	ci left: 4.083097e-01	ci right 4.091895e-01	k: 1961998	n:4800000
KS ci ratio: 4.410308e-01	ci left: 1.284497e-05	ci right 2.028069e-05	k: 78	n:4800000
C16orf45   4800000 perm   9688 sec   (495 perm/sec)   p_kst 1.625000e-05   p_cons 4.087496e-01   p_joint 3.708333e-05

Joint ci ratio: 2.929891e-01	ci left: 3.176941e-05	ci right 4.285985e-05	k: 178	n:4810000
Cons ci ratio: 2.149735e-03	ci left: 4.082941e-01	ci right 4.091730e-01	k: 1966008	n:4810000
KS ci ratio: 4.410308e-01	ci left: 1.281827e-05	ci right 2.023853e-05	k: 78	n:4810000
C16orf45   4810000 perm   9726 sec   (495 perm/sec)   p_kst 1.621622e-05   p_cons 4.087335e-01   p_joint 3.700624e-05

Joint ci ratio: 2.929891e-01	ci left: 3.170350e-05	ci right 4.277093e-05	k: 178	n:4820000
Cons ci ratio: 2.147542e-03	ci left: 4.082860e-01	ci right 4.091639e-01	k: 1970054	n:4820000
KS ci ratio: 4.410308e-01	ci left: 1.279167e-05	ci right 2.019654e-05	k: 78	n:4820000
C16orf45   4820000 perm   9763 sec   (494 perm/sec)   p_kst 1.618257e-05   p_cons 4.087249e-01   p_joint 3.692946e-05

Joint ci ratio: 2.929891e-01	ci left: 3.163786e-05	ci right 4.268237e-05	k: 178	n:4830000
Cons ci ratio: 2.145291e-03	ci left: 4.082924e-01	ci right 4.091694e-01	k: 1974170	n:4830000
KS ci ratio: 4.410308e-01	ci left: 1.276519e-05	ci right 2.015473e-05	k: 78	n:4830000
C16orf45   4830000 perm   9800 sec   (493 perm/sec)   p_kst 1.614907e-05   p_cons 4.087308e-01   p_joint 3.685300e-05

Joint ci ratio: 2.921741e-01	ci left: 3.176394e-05	ci right 4.281592e-05	k: 179	n:4840000
Cons ci ratio: 2.142994e-03	ci left: 4.083107e-01	ci right 4.091869e-01	k: 1978344	n:4840000
KS ci ratio: 4.382657e-01	ci left: 1.292255e-05	ci right 2.034243e-05	k: 79	n:4840000
C16orf45   4840000 perm   9838 sec   (492 perm/sec)   p_kst 1.632231e-05   p_cons 4.087488e-01   p_joint 3.698347e-05

Joint ci ratio: 2.921741e-01	ci left: 3.169845e-05	ci right 4.272764e-05	k: 179	n:4850000
Cons ci ratio: 2.140797e-03	ci left: 4.083082e-01	ci right 4.091834e-01	k: 1982417	n:4850000
KS ci ratio: 4.382657e-01	ci left: 1.289591e-05	ci right 2.030049e-05	k: 79	n:4850000
C16orf45   4850000 perm   9877 sec   (491 perm/sec)   p_kst 1.628866e-05   p_cons 4.087458e-01   p_joint 3.690722e-05

Joint ci ratio: 2.921741e-01	ci left: 3.163322e-05	ci right 4.263972e-05	k: 179	n:4860000
Cons ci ratio: 2.138538e-03	ci left: 4.083213e-01	ci right 4.091957e-01	k: 1986566	n:4860000
KS ci ratio: 4.382657e-01	ci left: 1.286937e-05	ci right 2.025872e-05	k: 79	n:4860000
C16orf45   4860000 perm   9915 sec   (490 perm/sec)   p_kst 1.625514e-05   p_cons 4.087584e-01   p_joint 3.683128e-05

Joint ci ratio: 2.921741e-01	ci left: 3.156827e-05	ci right 4.255217e-05	k: 179	n:4870000
Cons ci ratio: 2.136318e-03	ci left: 4.083270e-01	ci right 4.092004e-01	k: 1990679	n:4870000
KS ci ratio: 4.382657e-01	ci left: 1.284295e-05	ci right 2.021712e-05	k: 79	n:4870000
C16orf45   4870000 perm   9954 sec   (489 perm/sec)   p_kst 1.622177e-05   p_cons 4.087637e-01   p_joint 3.675565e-05

Joint ci ratio: 2.921741e-01	ci left: 3.150358e-05	ci right 4.246497e-05	k: 179	n:4880000
Cons ci ratio: 2.134081e-03	ci left: 4.083380e-01	ci right 4.092105e-01	k: 1994818	n:4880000
KS ci ratio: 4.382657e-01	ci left: 1.281663e-05	ci right 2.017569e-05	k: 79	n:4880000
C16orf45   4880000 perm   9992 sec   (488 perm/sec)   p_kst 1.618852e-05   p_cons 4.087742e-01   p_joint 3.668033e-05

Joint ci ratio: 2.913659e-01	ci left: 3.162869e-05	ci right 4.259755e-05	k: 180	n:4890000
Cons ci ratio: 2.131868e-03	ci left: 4.083452e-01	ci right 4.092169e-01	k: 1998939	n:4890000
KS ci ratio: 4.355519e-01	ci left: 1.297242e-05	ci right 2.036129e-05	k: 80	n:4890000
C16orf45   4890000 perm   10031 sec   (487 perm/sec)   p_kst 1.635992e-05   p_cons 4.087810e-01   p_joint 3.680982e-05

Joint ci ratio: 2.905643e-01	ci left: 3.175333e-05	ci right 4.272955e-05	k: 181	n:4900000
Cons ci ratio: 2.129636e-03	ci left: 4.083583e-01	ci right 4.092291e-01	k: 2003089	n:4900000
KS ci ratio: 4.355519e-01	ci left: 1.294594e-05	ci right 2.031974e-05	k: 80	n:4900000
C16orf45   4900000 perm   10069 sec   (487 perm/sec)   p_kst 1.632653e-05   p_cons 4.087937e-01   p_joint 3.693878e-05

Joint ci ratio: 3.033335e-01	ci left: 2.886111e-05	ci right 3.936074e-05	k: 166	n:4910000
Cons ci ratio: 2.127516e-03	ci left: 4.083474e-01	ci right 4.092173e-01	k: 2007121	n:4910000
KS ci ratio: 4.355519e-01	ci left: 1.291958e-05	ci right 2.027836e-05	k: 80	n:4910000
C16orf45   4910000 perm   10108 sec   (486 perm/sec)   p_kst 1.629328e-05   p_cons 4.087823e-01   p_joint 3.380855e-05

Joint ci ratio: 3.033335e-01	ci left: 2.880245e-05	ci right 3.928074e-05	k: 166	n:4920000
Cons ci ratio: 2.125367e-03	ci left: 4.083446e-01	ci right 4.092136e-01	k: 2011193	n:4920000
KS ci ratio: 4.355519e-01	ci left: 1.289332e-05	ci right 2.023714e-05	k: 80	n:4920000
C16orf45   4920000 perm   10147 sec   (485 perm/sec)   p_kst 1.626016e-05   p_cons 4.087791e-01   p_joint 3.373984e-05

Joint ci ratio: 3.033335e-01	ci left: 2.874402e-05	ci right 3.920106e-05	k: 166	n:4930000
Cons ci ratio: 2.123245e-03	ci left: 4.083372e-01	ci right 4.092053e-01	k: 2015242	n:4930000
KS ci ratio: 4.355519e-01	ci left: 1.286717e-05	ci right 2.019609e-05	k: 80	n:4930000
C16orf45   4930000 perm   10186 sec   (484 perm/sec)   p_kst 1.622718e-05   p_cons 4.087712e-01   p_joint 3.367140e-05

Joint ci ratio: 3.024294e-01	ci left: 2.887289e-05	ci right 3.933947e-05	k: 167	n:4940000
Cons ci ratio: 2.121116e-03	ci left: 4.083328e-01	ci right 4.092001e-01	k: 2019306	n:4940000
KS ci ratio: 4.355519e-01	ci left: 1.284112e-05	ci right 2.015521e-05	k: 80	n:4940000
C16orf45   4940000 perm   10226 sec   (483 perm/sec)   p_kst 1.619433e-05   p_cons 4.087664e-01   p_joint 3.380567e-05

Joint ci ratio: 3.024294e-01	ci left: 2.881456e-05	ci right 3.926000e-05	k: 167	n:4950000
Cons ci ratio: 2.119006e-03	ci left: 4.083257e-01	ci right 4.091920e-01	k: 2023356	n:4950000
KS ci ratio: 4.355519e-01	ci left: 1.281518e-05	ci right 2.011449e-05	k: 80	n:4950000
C16orf45   4950000 perm   10265 sec   (482 perm/sec)   p_kst 1.616162e-05   p_cons 4.087588e-01   p_joint 3.373737e-05

Joint ci ratio: 3.024294e-01	ci left: 2.875646e-05	ci right 3.918085e-05	k: 167	n:4960000
Cons ci ratio: 2.116891e-03	ci left: 4.083209e-01	ci right 4.091864e-01	k: 2027418	n:4960000
KS ci ratio: 4.355520e-01	ci left: 1.278934e-05	ci right 2.007394e-05	k: 80	n:4960000
C16orf45   4960000 perm   10304 sec   (481 perm/sec)   p_kst 1.612903e-05   p_cons 4.087536e-01   p_joint 3.366935e-05

Joint ci ratio: 3.006451e-01	ci left: 2.907058e-05	ci right 3.953478e-05	k: 169	n:4970000
Cons ci ratio: 2.114755e-03	ci left: 4.083225e-01	ci right 4.091871e-01	k: 2031511	n:4970000
KS ci ratio: 4.302723e-01	ci left: 1.312216e-05	ci right 2.047956e-05	k: 82	n:4970000
C16orf45   4970000 perm   10344 sec   (480 perm/sec)   p_kst 1.649899e-05   p_cons 4.087547e-01   p_joint 3.400402e-05

Joint ci ratio: 3.006451e-01	ci left: 2.901220e-05	ci right 3.945539e-05	k: 169	n:4980000
Cons ci ratio: 2.112591e-03	ci left: 4.083320e-01	ci right 4.091958e-01	k: 2035644	n:4980000
KS ci ratio: 4.302723e-01	ci left: 1.309581e-05	ci right 2.043844e-05	k: 82	n:4980000
C16orf45   4980000 perm   10383 sec   (480 perm/sec)   p_kst 1.646586e-05   p_cons 4.087639e-01   p_joint 3.393574e-05

Joint ci ratio: 2.997647e-01	ci left: 2.913937e-05	ci right 3.959177e-05	k: 170	n:4990000
Cons ci ratio: 2.110428e-03	ci left: 4.083430e-01	ci right 4.092058e-01	k: 2039784	n:4990000
KS ci ratio: 4.302723e-01	ci left: 1.306957e-05	ci right 2.039748e-05	k: 82	n:4990000
C16orf45   4990000 perm   10423 sec   (479 perm/sec)   p_kst 1.643287e-05   p_cons 4.087743e-01   p_joint 3.406814e-05

Joint ci ratio: 2.980269e-01	ci left: 2.945110e-05	ci right 3.994249e-05	k: 172	n:5000000
Cons ci ratio: 2.108332e-03	ci left: 4.083396e-01	ci right 4.092017e-01	k: 2043853	n:5000000
KS ci ratio: 4.302723e-01	ci left: 1.304343e-05	ci right 2.035668e-05	k: 82	n:5000000
C16orf45   5000000 perm   10464 sec   (478 perm/sec)   p_kst 1.640000e-05   p_cons 4.087706e-01   p_joint 3.440000e-05

Outputting figure to mutsig2_images.part000000000020/C16orf45.3_698_5000000_1.64e-05_0.40877_3.44e-05.png
                gene_name: C16orf45
               theta_stop: 0.43 
                    nperm: 5000000 
                     p_ks: 1.64e-05 
        ci_ks_bounds_left: 1.30e-05 
       ci_ks_bounds_right: 2.04e-05 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.41 
                  p_joint: 3.44e-05 
     ci_joint_bounds_left: 2.95e-05 
    ci_joint_bounds_right: 3.99e-05 

Current progress: 53 percent done.
C16orf58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.209730e-02	ci left: 3.519757e-01	ci right 3.709051e-01	k: 3614	n:10000
Cons ci ratio: 7.530342e-02	ci left: 2.051084e-01	ci right 2.212590e-01	k: 2131	n:10000
KS ci ratio: 3.486271e-02	ci left: 5.485012e-01	ci right 5.680648e-01	k: 5583	n:10000
C16orf58   10000 perm   2 sec   (6212 perm/sec)   p_kst 5.583000e-01   p_cons 2.131000e-01   p_joint 3.614000e-01

Outputting figure to mutsig2_images.part000000000020/C16orf58.3_1459_10000_0.5583_0.2131_0.3614.png
                gene_name: C16orf58
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 55 percent done.
C16orf71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.844883e-02	ci left: 4.997504e-01	ci right 5.194440e-01	k: 5096	n:10000
Cons ci ratio: 8.484586e-02	ci left: 1.683846e-01	ci right 1.834047e-01	k: 1758	n:10000
KS ci ratio: 3.500427e-02	ci left: 5.464973e-01	ci right 5.660699e-01	k: 5563	n:10000
C16orf71   10000 perm   2 sec   (6230 perm/sec)   p_kst 5.563000e-01   p_cons 1.758000e-01   p_joint 5.096000e-01

Outputting figure to mutsig2_images.part000000000020/C16orf71.3_1595_10000_0.5563_0.1758_0.5096.png
                gene_name: C16orf71
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 58 percent done.
C14orf148
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.110282e-02	ci left: 9.204880e-01	ci right 9.308624e-01	k: 9258	n:10000
Cons ci ratio: 2.208266e-02	ci left: 7.505939e-01	ci right 7.674550e-01	k: 7591	n:10000
KS ci ratio: 2.500901e-02	ci left: 7.017023e-01	ci right 7.195748e-01	k: 7107	n:10000
C14orf148   10000 perm   1 sec   (6756 perm/sec)   p_kst 7.107000e-01   p_cons 7.591000e-01   p_joint 9.258000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf148.2_1175_10000_0.7107_0.7591_0.9258.png
                gene_name: C14orf148
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 61 percent done.
C14orf166
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131927e-02	ci left: 9.177038e-01	ci right 9.282482e-01	k: 9231	n:10000
Cons ci ratio: 8.357525e-03	ci left: 9.524213e-01	ci right 9.605100e-01	k: 9566	n:10000
KS ci ratio: 3.149895e-02	ci left: 5.979496e-01	ci right 6.171877e-01	k: 6076	n:10000
C14orf166   10000 perm   2 sec   (6337 perm/sec)   p_kst 6.076000e-01   p_cons 9.566000e-01   p_joint 9.231000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf166.2_767_10000_0.6076_0.9566_0.9231.png
                gene_name: C14orf166
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 63 percent done.
C14orf182
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.995174e-02	ci left: 1.265977e-01	ci right 1.400167e-01	k: 1332	n:10000
Cons ci ratio: 1.554170e-02	ci left: 8.573295e-01	ci right 8.708576e-01	k: 8642	n:10000
KS ci ratio: 2.473410e-01	ci left: 2.146516e-02	ci right 2.761609e-02	k: 244	n:10000
C14orf182   10000 perm   2 sec   (6477 perm/sec)   p_kst 2.440000e-02   p_cons 8.642000e-01   p_joint 1.332000e-01

Joint ci ratio: 6.123536e-02	ci left: 1.648173e-01	ci right 1.752788e-01	k: 3400	n:20000
Cons ci ratio: 1.111247e-02	ci left: 8.566859e-01	ci right 8.663087e-01	k: 17231	n:20000
KS ci ratio: 1.727444e-01	ci left: 2.292841e-02	ci right 2.731114e-02	k: 501	n:20000
C14orf182   20000 perm   3 sec   (5910 perm/sec)   p_kst 2.505000e-02   p_cons 8.615500e-01   p_joint 1.700000e-01

Joint ci ratio: 3.506012e-02	ci left: 2.889475e-01	ci right 2.992924e-01	k: 8823	n:30000
Cons ci ratio: 9.110417e-03	ci left: 8.565953e-01	ci right 8.644681e-01	k: 25817	n:30000
KS ci ratio: 1.395331e-01	ci left: 2.384218e-02	ci right 2.745048e-02	k: 768	n:30000
C14orf182   30000 perm   5 sec   (5736 perm/sec)   p_kst 2.560000e-02   p_cons 8.605667e-01   p_joint 2.941000e-01

Joint ci ratio: 3.192225e-02	ci left: 2.693845e-01	ci right 2.781484e-01	k: 10950	n:40000
Cons ci ratio: 7.883726e-03	ci left: 8.573185e-01	ci right 8.641290e-01	k: 34430	n:40000
KS ci ratio: 1.191993e-01	ci left: 2.475374e-02	ci right 2.791554e-02	k: 1052	n:40000
C14orf182   40000 perm   7 sec   (5598 perm/sec)   p_kst 2.630000e-02   p_cons 8.607500e-01   p_joint 2.737500e-01

Joint ci ratio: 2.391461e-02	ci left: 3.453394e-01	ci right 3.537181e-01	k: 17476	n:50000
Cons ci ratio: 7.076934e-03	ci left: 8.568066e-01	ci right 8.629116e-01	k: 42994	n:50000
KS ci ratio: 1.053983e-01	ci left: 2.549938e-02	ci right 2.835590e-02	k: 1345	n:50000
C14orf182   50000 perm   9 sec   (5465 perm/sec)   p_kst 2.690000e-02   p_cons 8.598800e-01   p_joint 3.495200e-01

Joint ci ratio: 2.592369e-02	ci left: 2.723428e-01	ci right 2.795123e-01	k: 16555	n:60000
Cons ci ratio: 6.462886e-03	ci left: 8.569794e-01	ci right 8.625524e-01	k: 51587	n:60000
KS ci ratio: 9.612963e-02	ci left: 2.566884e-02	ci right 2.827718e-02	k: 1617	n:60000
C14orf182   60000 perm   11 sec   (5339 perm/sec)   p_kst 2.695000e-02   p_cons 8.597833e-01   p_joint 2.759167e-01

Outputting figure to mutsig2_images.part000000000020/C14orf182.2_336_60000_0.02695_0.85978_0.27592.png
                gene_name: C14orf182
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 66 percent done.
C14orf183
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.623340e-02	ci left: 5.293701e-01	ci right 5.490070e-01	k: 5392	n:10000
Cons ci ratio: 4.454932e-02	ci left: 4.265498e-01	ci right 4.460873e-01	k: 4363	n:10000
KS ci ratio: 4.427063e-03	ci left: 9.851247e-01	ci right 9.895847e-01	k: 9875	n:10000
C14orf183   10000 perm   2 sec   (6309 perm/sec)   p_kst 9.875000e-01   p_cons 4.363000e-01   p_joint 5.392000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf183.2_995_10000_0.9875_0.4363_0.5392.png
                gene_name: C14orf183
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 68 percent done.
C14orf21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.010923e-01	ci left: 1.240539e-01	ci right 1.373620e-01	k: 1306	n:10000
Cons ci ratio: 1.424392e-01	ci left: 6.536500e-02	ci right 7.548697e-02	k: 703	n:10000
KS ci ratio: 1.840456e-02	ci left: 8.117176e-01	ci right 8.268959e-01	k: 8194	n:10000
C14orf21   10000 perm   2 sec   (6132 perm/sec)   p_kst 8.194000e-01   p_cons 7.030000e-02   p_joint 1.306000e-01

Joint ci ratio: 9.503318e-02	ci left: 7.466227e-02	ci right 8.216085e-02	k: 1567	n:20000
Cons ci ratio: 1.029413e-01	ci left: 6.410982e-02	ci right 7.111653e-02	k: 1351	n:20000
KS ci ratio: 1.287268e-02	ci left: 8.172340e-01	ci right 8.278721e-01	k: 16452	n:20000
C14orf21   20000 perm   4 sec   (5496 perm/sec)   p_kst 8.226000e-01   p_cons 6.755000e-02   p_joint 7.835000e-02

Joint ci ratio: 7.403225e-02	ci left: 8.229385e-02	ci right 8.865336e-02	k: 2563	n:30000
Cons ci ratio: 8.838394e-02	ci left: 5.880731e-02	ci right 6.427798e-02	k: 1845	n:30000
KS ci ratio: 1.063977e-02	ci left: 8.145957e-01	ci right 8.233424e-01	k: 24570	n:30000
C14orf21   30000 perm   6 sec   (5242 perm/sec)   p_kst 8.190000e-01   p_cons 6.150000e-02   p_joint 8.543333e-02

Outputting figure to mutsig2_images.part000000000020/C14orf21.2_1951_30000_0.819_0.0615_0.085433.png
                gene_name: C14orf21
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.089 

Current progress: 71 percent done.
C14orf28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.617132e-02	ci left: 8.475379e-01	ci right 8.614549e-01	k: 8546	n:10000
Cons ci ratio: 1.309951e-02	ci left: 8.935428e-01	ci right 9.054233e-01	k: 8996	n:10000
KS ci ratio: 8.176015e-02	ci left: 1.792031e-01	ci right 1.945798e-01	k: 1868	n:10000
C14orf28   10000 perm   1 sec   (7004 perm/sec)   p_kst 1.868000e-01   p_cons 8.996000e-01   p_joint 8.546000e-01

Outputting figure to mutsig2_images.part000000000020/C14orf28.2_949_10000_0.1868_0.8996_0.8546.png
                gene_name: C14orf28
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 74 percent done.
C15orf23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.189000e-02	ci left: 5.920266e-01	ci right 6.113142e-01	k: 6017	n:10000
Cons ci ratio: 2.129725e-02	ci left: 7.637498e-01	ci right 7.802915e-01	k: 7721	n:10000
KS ci ratio: 5.453085e-02	ci left: 3.313090e-01	ci right 3.499839e-01	k: 3406	n:10000
C15orf23   10000 perm   2 sec   (6648 perm/sec)   p_kst 3.406000e-01   p_cons 7.721000e-01   p_joint 6.017000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf23.2_1030_10000_0.3406_0.7721_0.6017.png
                gene_name: C15orf23
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 76 percent done.
C15orf26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.394201e-02	ci left: 7.194657e-01	ci right 7.370011e-01	k: 7283	n:10000
KS ci ratio: 1.975368e-02	ci left: 7.894875e-01	ci right 8.053389e-01	k: 7975	n:10000
C15orf26   10000 perm   1 sec   (7048 perm/sec)   p_kst 7.975000e-01   p_cons 7.283000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000020/C15orf26.2_934_10000_0.7975_0.7283_1.png
                gene_name: C15orf26
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
C15orf40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.254263e-02	ci left: 2.177347e-01	ci right 2.342252e-01	k: 2259	n:10000
Cons ci ratio: 8.036185e-02	ci left: 1.844192e-01	ci right 1.999605e-01	k: 1921	n:10000
KS ci ratio: 5.066151e-02	ci left: 3.649021e-01	ci right 3.839711e-01	k: 3744	n:10000
C15orf40   10000 perm   2 sec   (6645 perm/sec)   p_kst 3.744000e-01   p_cons 1.921000e-01   p_joint 2.259000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf40.2_950_10000_0.3744_0.1921_0.2259.png
                gene_name: C15orf40
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 82 percent done.
C15orf41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.186529e-01	ci left: 9.253239e-02	ci right 1.043027e-01	k: 983	n:10000
Cons ci ratio: 2.230595e-02	ci left: 7.468514e-01	ci right 7.637996e-01	k: 7554	n:10000
KS ci ratio: 2.236599e-01	ci left: 2.646035e-02	ci right 3.321723e-02	k: 297	n:10000
C15orf41   10000 perm   1 sec   (6751 perm/sec)   p_kst 2.970000e-02   p_cons 7.554000e-01   p_joint 9.830000e-02

Joint ci ratio: 4.517597e-02	ci left: 2.672809e-01	ci right 2.796850e-01	k: 5469	n:20000
Cons ci ratio: 1.574717e-02	ci left: 7.499857e-01	ci right 7.619398e-01	k: 15120	n:20000
KS ci ratio: 1.570719e-01	ci left: 2.782361e-02	ci right 3.261426e-02	k: 603	n:20000
C15orf41   20000 perm   3 sec   (5965 perm/sec)   p_kst 3.015000e-02   p_cons 7.560000e-01   p_joint 2.734500e-01

Joint ci ratio: 3.081534e-02	ci left: 3.449661e-01	ci right 3.557962e-01	k: 10511	n:30000
Cons ci ratio: 1.296556e-02	ci left: 7.479782e-01	ci right 7.577728e-01	k: 22587	n:30000
KS ci ratio: 1.234163e-01	ci left: 3.052214e-02	ci right 3.456905e-02	k: 975	n:30000
C15orf41   30000 perm   5 sec   (5670 perm/sec)   p_kst 3.250000e-02   p_cons 7.529000e-01   p_joint 3.503667e-01

Joint ci ratio: 4.519929e-02	ci left: 1.546857e-01	ci right 1.618640e-01	k: 6330	n:40000
Cons ci ratio: 1.121192e-02	ci left: 7.491954e-01	ci right 7.576677e-01	k: 30138	n:40000
KS ci ratio: 1.072375e-01	ci left: 3.058895e-02	ci right 3.407937e-02	k: 1292	n:40000
C15orf41   40000 perm   7 sec   (5479 perm/sec)   p_kst 3.230000e-02   p_cons 7.534500e-01   p_joint 1.582500e-01

Joint ci ratio: 2.301157e-02	ci left: 3.629926e-01	ci right 3.714629e-01	k: 18361	n:50000
Cons ci ratio: 1.000153e-02	ci left: 7.506426e-01	ci right 7.582079e-01	k: 37722	n:50000
KS ci ratio: 9.717381e-02	ci left: 2.998627e-02	ci right 3.306843e-02	k: 1575	n:50000
C15orf41   50000 perm   9 sec   (5308 perm/sec)   p_kst 3.150000e-02   p_cons 7.544400e-01   p_joint 3.672200e-01

Outputting figure to mutsig2_images.part000000000020/C15orf41.2_890_50000_0.0315_0.75444_0.36722.png
                gene_name: C15orf41
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 84 percent done.
C15orf52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.012206e-02	ci left: 4.784575e-01	ci right 4.981493e-01	k: 4883	n:10000
Cons ci ratio: 6.183069e-02	ci left: 2.777507e-01	ci right 2.955737e-01	k: 2866	n:10000
KS ci ratio: 7.090273e-02	ci left: 2.257305e-01	ci right 2.424247e-01	k: 2340	n:10000
C15orf52   10000 perm   2 sec   (6283 perm/sec)   p_kst 2.340000e-01   p_cons 2.866000e-01   p_joint 4.883000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf52.2_1649_10000_0.234_0.2866_0.4883.png
                gene_name: C15orf52
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 87 percent done.
C15orf57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.494084e-02	ci left: 4.222622e-01	ci right 4.417774e-01	k: 4320	n:10000
KS ci ratio: 1.800553e-02	ci left: 8.182217e-01	ci right 8.331881e-01	k: 8258	n:10000
C15orf57   10000 perm   1 sec   (6814 perm/sec)   p_kst 8.258000e-01   p_cons 4.320000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000020/C15orf57.2_601_10000_0.8258_0.432_1.png
                gene_name: C15orf57
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
C15orf59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.810553e-02	ci left: 8.165953e-01	ci right 8.316154e-01	k: 8242	n:10000
Cons ci ratio: 4.714180e-02	ci left: 3.990427e-01	ci right 4.184105e-01	k: 4087	n:10000
KS ci ratio: 2.798295e-02	ci left: 6.530352e-01	ci right 6.716701e-01	k: 6624	n:10000
C15orf59   10000 perm   1 sec   (6704 perm/sec)   p_kst 6.624000e-01   p_cons 4.087000e-01   p_joint 8.242000e-01

Outputting figure to mutsig2_images.part000000000020/C15orf59.2_890_10000_0.6624_0.4087_0.8242.png
                gene_name: C15orf59
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 92 percent done.
C16orf46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.465171e-02	ci left: 1.394271e-01	ci right 1.533796e-01	k: 1463	n:10000
Cons ci ratio: 3.988998e-02	ci left: 4.813555e-01	ci right 5.010497e-01	k: 4912	n:10000
KS ci ratio: 1.639045e-01	ci left: 4.965055e-02	ci right 5.861142e-02	k: 540	n:10000
C16orf46   10000 perm   1 sec   (6778 perm/sec)   p_kst 5.400000e-02   p_cons 4.912000e-01   p_joint 1.463000e-01

Joint ci ratio: 6.192770e-02	ci left: 1.617065e-01	ci right 1.720906e-01	k: 3337	n:20000
Cons ci ratio: 2.821428e-02	ci left: 4.841483e-01	ci right 4.980543e-01	k: 9822	n:20000
KS ci ratio: 1.164133e-01	ci left: 5.051865e-02	ci right 5.681191e-02	k: 1072	n:20000
C16orf46   20000 perm   3 sec   (5815 perm/sec)   p_kst 5.360000e-02   p_cons 4.911000e-01   p_joint 1.668500e-01

Joint ci ratio: 4.478851e-02	ci left: 1.988242e-01	ci right 2.079666e-01	k: 6101	n:30000
Cons ci ratio: 2.312828e-02	ci left: 4.834614e-01	ci right 4.948074e-01	k: 14674	n:30000
KS ci ratio: 9.598481e-02	ci left: 5.013325e-02	ci right 5.522049e-02	k: 1579	n:30000
C16orf46   30000 perm   5 sec   (5571 perm/sec)   p_kst 5.263333e-02   p_cons 4.891333e-01   p_joint 2.033667e-01

Outputting figure to mutsig2_images.part000000000020/C16orf46.2_1224_30000_0.052633_0.48913_0.20337.png
                gene_name: C16orf46
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 95 percent done.
C16orf48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.742366e-02	ci left: 5.132551e-01	ci right 5.329314e-01	k: 5231	n:10000
Cons ci ratio: 4.939873e-02	ci left: 3.767412e-01	ci right 3.959251e-01	k: 3863	n:10000
KS ci ratio: 1.216596e-02	ci left: 9.064824e-01	ci right 9.176761e-01	k: 9122	n:10000
C16orf48   10000 perm   1 sec   (6913 perm/sec)   p_kst 9.122000e-01   p_cons 3.863000e-01   p_joint 5.231000e-01

Outputting figure to mutsig2_images.part000000000020/C16orf48.2_1069_10000_0.9122_0.3863_0.5231.png
                gene_name: C16orf48
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 97 percent done.
C16orf62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.707253e-02	ci left: 2.459853e-01	ci right 2.631579e-01	k: 2545	n:10000
Cons ci ratio: 6.230261e-02	ci left: 2.746806e-01	ci right 2.924457e-01	k: 2835	n:10000
KS ci ratio: 5.917331e-02	ci left: 2.958849e-01	ci right 3.140289e-01	k: 3049	n:10000
C16orf62   10000 perm   2 sec   (5651 perm/sec)   p_kst 3.049000e-01   p_cons 2.835000e-01   p_joint 2.545000e-01

Outputting figure to mutsig2_images.part000000000020/C16orf62.2_3016_10000_0.3049_0.2835_0.2545.png
                gene_name: C16orf62
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000020
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 20 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1548>
Subject: Job 9893850: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1548>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000021> was used as the working directory.
Started at Fri Oct  5 23:55:51 2012
Results reported at Sat Oct  6 00:04:52 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000021.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000021.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 21  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000021.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    566.02 sec.
    Max Memory :      3595 MB
    Max Swap   :      5822 MB

    Max Processes  :         7
    Max Threads    :        60

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
21
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 21
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 21: processing genes 1804 - 1893
Calculating significance of each gene.
Using projection method.
1804	C16orf75	1
1805	C16orf78	2.547117e-01
1806	C16orf79	1
1807	C16orf80	1
1808	C16orf82	1
1809	C16orf86	1
1810	C16orf87	8.469146e-02
1811	C16orf88	4.546038e-01
1812	C16orf89	9.215783e-01
1813	C16orf90	2.608602e-01
1814	C16orf91	1
1815	C16orf92	1
1816	C16orf93	1
1817	C17orf101	6.343467e-01
1818	C17orf102	3.072477e-01
1819	C17orf103	2.311291e-01
1820	C17orf104	2.448293e-01
1821	C17orf108	2.112484e-01
1822	C17orf28	5.238387e-01
1823	C17orf37	4.004760e-01
1824	C17orf39	3.147794e-01
1825	C17orf42	1.056638e-01
1826	C17orf46	6.695828e-01
1827	C17orf47	4.461795e-01
1828	C17orf48	3.624427e-01
1829	C17orf49	1
1830	C17orf53	8.083243e-01
1831	C17orf55	6.067787e-01
1832	C17orf56	1
1833	C17orf57	2.920084e-01
1834	C17orf58	1
1835	C17orf59	3.420334e-01
1836	C17orf60	7.042549e-01
1837	C17orf61	1
1838	C17orf62	2.391954e-01
1839	C17orf63	8.253077e-01
1840	C17orf64	1
1841	C17orf65	1
1842	C17orf66	3.014008e-01
1843	C17orf67	1
1844	C17orf68	1
1845	C17orf70	1
1846	C17orf71	7.595680e-01
1847	C17orf74	8.272576e-01
1848	C17orf75	2.213977e-01
1849	C17orf76	1
1850	C17orf77	1
1851	C17orf78	4.162737e-01
1852	C17orf79	4.201364e-01
1853	C17orf80	9.569062e-01
1854	C17orf81	1
1855	C17orf82	1
1856	C17orf85	7.507846e-01
1857	C17orf87	2.117827e-01
1858	C17orf90	1
1859	C17orf95	1.293448e-01
1860	C17orf97	6.194636e-02
1861	C17orf98	6.733298e-01
1862	C18orf1	7.753733e-01
1863	C18orf10	6.261587e-01
1864	C18orf19	4.639524e-02
1865	C18orf21	6.725695e-01
1866	C18orf22	1
1867	C18orf25	8.981033e-01
1868	C18orf26	4.730961e-01
1869	C18orf32	2.665712e-01
1870	C18orf34	3.809218e-01
1871	C18orf45	6.346004e-01
1872	C18orf54	4.005485e-01
1873	C18orf55	5.622823e-01
1874	C18orf56	1
1875	C18orf62	4.215368e-01
1876	C18orf8	6.802080e-01
1877	C19orf10	3.626514e-01
1878	C19orf12	1
1879	C19orf18	4.124866e-01
1880	C19orf2	7.879864e-01
1881	C19orf21	7.108517e-01
1882	C19orf22	1
1883	C19orf25	1
1884	C19orf26	1
1885	C19orf28	8.502228e-01
1886	C19orf29	8.716898e-01
1887	C19orf33	1
1888	C19orf35	1
1889	C19orf36	1
1890	C19orf39	5.978611e-01
1891	C19orf40	3.186518e-01
1892	C19orf41	1
1893	C19orf42	1
Done

Running MutSig 2:
Scatter job 21: processing genes 1804 - 1893
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C17orf71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.791351e-02	ci left: 3.050079e-01	ci right 3.233005e-01	k: 3141	n:10000
Cons ci ratio: 6.071583e-02	ci left: 2.851807e-01	ci right 3.031394e-01	k: 2941	n:10000
KS ci ratio: 6.284356e-02	ci left: 2.712149e-01	ci right 2.889134e-01	k: 2800	n:10000
C17orf71   10000 perm   3 sec   (3567 perm/sec)   p_kst 2.800000e-01   p_cons 2.941000e-01   p_joint 3.141000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf71.8_2992_10000_0.28_0.2941_0.3141.png
                gene_name: C17orf71
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 3 percent done.
C18orf34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.362898e-01	ci left: 7.117069e-02	ci right 8.167765e-02	k: 763	n:10000
Cons ci ratio: 9.090017e-02	ci left: 1.496259e-01	ci right 1.639746e-01	k: 1567	n:10000
KS ci ratio: 1.367749e-01	ci left: 7.068651e-02	ci right 8.116213e-02	k: 758	n:10000
C18orf34   10000 perm   2 sec   (4450 perm/sec)   p_kst 7.580000e-02   p_cons 1.567000e-01   p_joint 7.630000e-02

Joint ci ratio: 1.208198e-01	ci left: 4.697153e-02	ci right 5.306014e-02	k: 999	n:20000
Cons ci ratio: 6.409544e-02	ci left: 1.524766e-01	ci right 1.626232e-01	k: 3150	n:20000
KS ci ratio: 9.536353e-02	ci left: 7.417323e-02	ci right 8.165003e-02	k: 1557	n:20000
C18orf34   20000 perm   5 sec   (4081 perm/sec)   p_kst 7.785000e-02   p_cons 1.575000e-01   p_joint 4.995000e-02

Joint ci ratio: 1.035385e-01	ci left: 4.323426e-02	ci right 4.798758e-02	k: 1367	n:30000
Cons ci ratio: 5.233070e-02	ci left: 1.534276e-01	ci right 1.617055e-01	k: 4726	n:30000
KS ci ratio: 8.007826e-02	ci left: 7.099709e-02	ci right 7.695239e-02	k: 2218	n:30000
C18orf34   30000 perm   8 sec   (3961 perm/sec)   p_kst 7.393333e-02   p_cons 1.575333e-01   p_joint 4.556667e-02

Joint ci ratio: 9.095482e-02	ci left: 4.235314e-02	ci right 4.641334e-02	k: 1774	n:40000
Cons ci ratio: 4.223097e-02	ci left: 1.734691e-01	ci right 1.809778e-01	k: 7088	n:40000
KS ci ratio: 6.918186e-02	ci left: 7.172378e-02	ci right 7.688822e-02	k: 2971	n:40000
C18orf34   40000 perm   10 sec   (3866 perm/sec)   p_kst 7.427500e-02   p_cons 1.772000e-01   p_joint 4.435000e-02

Outputting figure to mutsig2_images.part000000000021/C18orf34.8_2688_40000_0.074275_0.1772_0.04435.png
                gene_name: C18orf34
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 7 percent done.
C17orf57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.367975e-02	ci left: 2.659681e-01	ci right 2.835633e-01	k: 2747	n:10000
Cons ci ratio: 2.655002e-02	ci left: 6.762965e-01	ci right 6.945953e-01	k: 6855	n:10000
KS ci ratio: 9.739590e-02	ci left: 1.325692e-01	ci right 1.462416e-01	k: 1393	n:10000
C17orf57   10000 perm   2 sec   (4514 perm/sec)   p_kst 1.393000e-01   p_cons 6.855000e-01   p_joint 2.747000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf57.7_3010_10000_0.1393_0.6855_0.2747.png
                gene_name: C17orf57
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 10 percent done.
C17orf104
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.966982e-02	ci left: 1.870774e-01	ci right 2.027008e-01	k: 1948	n:10000
Cons ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
KS ci ratio: 5.424083e-02	ci left: 3.336927e-01	ci right 3.523989e-01	k: 3430	n:10000
C17orf104   10000 perm   2 sec   (4687 perm/sec)   p_kst 3.430000e-01   p_cons 1.864000e-01   p_joint 1.948000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf104.5_2891_10000_0.343_0.1864_0.1948.png
                gene_name: C17orf104
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 13 percent done.
C17orf97
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.575394e-01	ci left: 5.369051e-02	ci right 6.296887e-02	k: 582	n:10000
Cons ci ratio: 1.116124e-01	ci left: 1.036391e-01	ci right 1.159892e-01	k: 1097	n:10000
KS ci ratio: 1.466274e-01	ci left: 6.179002e-02	ci right 7.166421e-02	k: 666	n:10000
C17orf97   10000 perm   2 sec   (6394 perm/sec)   p_kst 6.660000e-02   p_cons 1.097000e-01   p_joint 5.820000e-02

Joint ci ratio: 1.083252e-01	ci left: 5.811191e-02	ci right 6.481629e-02	k: 1228	n:20000
Cons ci ratio: 7.876228e-02	ci left: 1.058430e-01	ci right 1.145707e-01	k: 2203	n:20000
KS ci ratio: 1.019739e-01	ci left: 6.528115e-02	ci right 7.234484e-02	k: 1375	n:20000
C17orf97   20000 perm   4 sec   (5615 perm/sec)   p_kst 6.875000e-02   p_cons 1.101500e-01   p_joint 6.140000e-02

Joint ci ratio: 8.477133e-02	ci left: 6.370602e-02	ci right 6.937828e-02	k: 1995	n:30000
Cons ci ratio: 6.239548e-02	ci left: 1.126272e-01	ci right 1.199140e-01	k: 3487	n:30000
KS ci ratio: 8.350114e-02	ci left: 6.556875e-02	ci right 7.131516e-02	k: 2052	n:30000
C17orf97   30000 perm   6 sec   (5149 perm/sec)   p_kst 6.840000e-02   p_cons 1.162333e-01   p_joint 6.650000e-02

Outputting figure to mutsig2_images.part000000000021/C17orf97.5_1284_30000_0.0684_0.11623_0.0665.png
                gene_name: C17orf97
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.069 

Current progress: 17 percent done.
C16orf78
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.572531e-01	ci left: 5.388306e-02	ci right 6.317620e-02	k: 584	n:10000
Cons ci ratio: 1.174650e-01	ci left: 9.428457e-02	ci right 1.061495e-01	k: 1001	n:10000
KS ci ratio: 1.244153e-01	ci left: 8.465526e-02	ci right 9.598471e-02	k: 902	n:10000
C16orf78   10000 perm   2 sec   (6275 perm/sec)   p_kst 9.020000e-02   p_cons 1.001000e-01   p_joint 5.840000e-02

Joint ci ratio: 1.192588e-01	ci left: 4.818582e-02	ci right 5.434548e-02	k: 1024	n:20000
Cons ci ratio: 8.402037e-02	ci left: 9.401126e-02	ci right 1.023060e-01	k: 1962	n:20000
KS ci ratio: 8.996207e-02	ci left: 8.278644e-02	ci right 9.063420e-02	k: 1733	n:20000
C16orf78   20000 perm   4 sec   (5511 perm/sec)   p_kst 8.665000e-02   p_cons 9.810000e-02   p_joint 5.120000e-02

Joint ci ratio: 1.049942e-01	ci left: 4.206419e-02	ci right 4.675789e-02	k: 1331	n:30000
Cons ci ratio: 6.817359e-02	ci left: 9.587243e-02	ci right 1.026721e-01	k: 2977	n:30000
KS ci ratio: 7.449384e-02	ci left: 8.134356e-02	ci right 8.767051e-02	k: 2534	n:30000
C16orf78   30000 perm   6 sec   (5208 perm/sec)   p_kst 8.446667e-02   p_cons 9.923333e-02   p_joint 4.436667e-02

Joint ci ratio: 9.864961e-02	ci left: 3.609860e-02	ci right 3.986885e-02	k: 1518	n:40000
Cons ci ratio: 5.937842e-02	ci left: 9.532513e-02	ci right 1.011833e-01	k: 3929	n:40000
KS ci ratio: 6.472316e-02	ci left: 8.127479e-02	ci right 8.673578e-02	k: 3359	n:40000
C16orf78   40000 perm   8 sec   (5011 perm/sec)   p_kst 8.397500e-02   p_cons 9.822500e-02   p_joint 3.795000e-02

Outputting figure to mutsig2_images.part000000000021/C16orf78.4_818_40000_0.083975_0.098225_0.03795.png
                gene_name: C16orf78
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.040 

Current progress: 20 percent done.
C16orf87
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.917331e-02	ci left: 2.958849e-01	ci right 3.140289e-01	k: 3049	n:10000
Cons ci ratio: 5.492152e-02	ci left: 3.281313e-01	ci right 3.467635e-01	k: 3374	n:10000
KS ci ratio: 8.222034e-02	ci left: 1.775304e-01	ci right 1.928534e-01	k: 1851	n:10000
C16orf87   10000 perm   2 sec   (6069 perm/sec)   p_kst 1.851000e-01   p_cons 3.374000e-01   p_joint 3.049000e-01

Outputting figure to mutsig2_images.part000000000021/C16orf87.4_481_10000_0.1851_0.3374_0.3049.png
                gene_name: C16orf87
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 23 percent done.
C17orf28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.041364e-02	ci left: 1.842223e-01	ci right 1.997575e-01	k: 1919	n:10000
Cons ci ratio: 7.598329e-02	ci left: 2.021508e-01	ci right 2.182184e-01	k: 2101	n:10000
KS ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
C17orf28   10000 perm   2 sec   (4333 perm/sec)   p_kst 1.890000e-01   p_cons 2.101000e-01   p_joint 1.919000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf28.4_2443_10000_0.189_0.2101_0.1919.png
                gene_name: C17orf28
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 27 percent done.
C18orf19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.009799e-02	ci left: 4.787572e-01	ci right 4.984494e-01	k: 4886	n:10000
Cons ci ratio: 2.659312e-02	ci left: 6.755913e-01	ci right 6.939010e-01	k: 6848	n:10000
KS ci ratio: 5.011454e-02	ci left: 3.699753e-01	ci right 3.890950e-01	k: 3795	n:10000
C18orf19   10000 perm   2 sec   (5673 perm/sec)   p_kst 3.795000e-01   p_cons 6.848000e-01   p_joint 4.886000e-01

Outputting figure to mutsig2_images.part000000000021/C18orf19.4_831_10000_0.3795_0.6848_0.4886.png
                gene_name: C18orf19
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 30 percent done.
C17orf42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.072890e-02	ci left: 4.709642e-01	ci right 4.906470e-01	k: 4808	n:10000
Cons ci ratio: 1.216596e-02	ci left: 9.064824e-01	ci right 9.176761e-01	k: 9122	n:10000
KS ci ratio: 5.428899e-02	ci left: 3.332954e-01	ci right 3.519964e-01	k: 3426	n:10000
C17orf42   10000 perm   2 sec   (6099 perm/sec)   p_kst 3.426000e-01   p_cons 9.122000e-01   p_joint 4.808000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf42.3_1099_10000_0.3426_0.9122_0.4808.png
                gene_name: C17orf42
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 33 percent done.
C17orf47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.847238e-02	ci left: 6.451864e-01	ci right 6.639235e-01	k: 6546	n:10000
Cons ci ratio: 4.813102e-02	ci left: 3.890841e-01	ci right 4.083750e-01	k: 3987	n:10000
KS ci ratio: 4.041214e-02	ci left: 4.748604e-01	ci right 4.945485e-01	k: 4847	n:10000
C17orf47   10000 perm   2 sec   (5823 perm/sec)   p_kst 4.847000e-01   p_cons 3.987000e-01   p_joint 6.546000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf47.3_1721_10000_0.4847_0.3987_0.6546.png
                gene_name: C17orf47
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 37 percent done.
C17orf66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.834908e-02	ci left: 1.922969e-01	ci right 2.080782e-01	k: 2001	n:10000
Cons ci ratio: 1.842321e-02	ci left: 8.114128e-01	ci right 8.266008e-01	k: 8191	n:10000
KS ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
C17orf66   10000 perm   2 sec   (5175 perm/sec)   p_kst 6.170000e-02   p_cons 8.191000e-01   p_joint 2.001000e-01

Joint ci ratio: 6.650479e-02	ci left: 1.430558e-01	ci right 1.529468e-01	k: 2959	n:20000
Cons ci ratio: 1.378590e-02	ci left: 7.961054e-01	ci right 8.072067e-01	k: 16034	n:20000
KS ci ratio: 1.059125e-01	ci left: 6.069528e-02	ci right 6.753211e-02	k: 1281	n:20000
C17orf66   20000 perm   4 sec   (4721 perm/sec)   p_kst 6.405000e-02   p_cons 8.017000e-01   p_joint 1.479500e-01

Joint ci ratio: 5.339394e-02	ci left: 1.482183e-01	ci right 1.563825e-01	k: 4568	n:30000
Cons ci ratio: 1.113558e-02	ci left: 8.005714e-01	ci right 8.095694e-01	k: 24153	n:30000
KS ci ratio: 8.767754e-02	ci left: 5.972137e-02	ci right 6.523040e-02	k: 1873	n:30000
C17orf66   30000 perm   7 sec   (4487 perm/sec)   p_kst 6.243333e-02   p_cons 8.051000e-01   p_joint 1.522667e-01

Outputting figure to mutsig2_images.part000000000021/C17orf66.3_1773_30000_0.062433_0.8051_0.15227.png
                gene_name: C17orf66
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 40 percent done.
C17orf74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.670574e-02	ci left: 4.035254e-01	ci right 4.229252e-01	k: 4132	n:10000
Cons ci ratio: 9.390706e-03	ci left: 9.411809e-01	ci right 9.501572e-01	k: 9458	n:10000
KS ci ratio: 7.961909e-02	ci left: 1.872743e-01	ci right 2.029038e-01	k: 1950	n:10000
C17orf74   10000 perm   2 sec   (5741 perm/sec)   p_kst 1.950000e-01   p_cons 9.458000e-01   p_joint 4.132000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf74.3_1518_10000_0.195_0.9458_0.4132.png
                gene_name: C17orf74
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 43 percent done.
C17orf75
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.399460e-02	ci left: 5.609292e-01	ci right 5.804296e-01	k: 5707	n:10000
KS ci ratio: 1.931253e-02	ci left: 7.967918e-01	ci right 8.124303e-01	k: 8047	n:10000
C17orf75   10000 perm   2 sec   (6133 perm/sec)   p_kst 8.047000e-01   p_cons 5.707000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000021/C17orf75.3_1231_10000_0.8047_0.5707_1.png
                gene_name: C17orf75
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
C19orf29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.506982e-02	ci left: 7.006935e-01	ci right 7.185842e-01	k: 7097	n:10000
Cons ci ratio: 5.326853e-02	ci left: 3.418387e-01	ci right 3.606481e-01	k: 3512	n:10000
KS ci ratio: 1.762899e-02	ci left: 8.243225e-01	ci right 8.390837e-01	k: 8318	n:10000
C19orf29   10000 perm   2 sec   (5864 perm/sec)   p_kst 8.318000e-01   p_cons 3.512000e-01   p_joint 7.097000e-01

Outputting figure to mutsig2_images.part000000000021/C19orf29.3_2317_10000_0.8318_0.3512_0.7097.png
                gene_name: C19orf29
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 50 percent done.
C16orf88
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.622426e-02	ci left: 6.816371e-01	ci right 6.998516e-01	k: 6908	n:10000
Cons ci ratio: 3.888965e-02	ci left: 4.940505e-01	ci right 5.137472e-01	k: 5039	n:10000
KS ci ratio: 9.124547e-02	ci left: 1.486448e-01	ci right 1.629564e-01	k: 1557	n:10000
C16orf88   10000 perm   2 sec   (6182 perm/sec)   p_kst 1.557000e-01   p_cons 5.039000e-01   p_joint 6.908000e-01

Outputting figure to mutsig2_images.part000000000021/C16orf88.2_1393_10000_0.1557_0.5039_0.6908.png
                gene_name: C16orf88
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 53 percent done.
C17orf101
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.516126e-02	ci left: 4.198695e-01	ci right 4.393715e-01	k: 4296	n:10000
KS ci ratio: 3.967515e-02	ci left: 4.840539e-01	ci right 5.037497e-01	k: 4939	n:10000
C17orf101   10000 perm   2 sec   (5924 perm/sec)   p_kst 4.939000e-01   p_cons 4.296000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000021/C17orf101.2_1173_10000_0.4939_0.4296_1.png
                gene_name: C17orf101
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
C17orf46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.367182e-02	ci left: 8.853423e-01	ci right 8.976286e-01	k: 8916	n:10000
Cons ci ratio: 1.402266e-02	ci left: 8.802224e-01	ci right 8.927514e-01	k: 8866	n:10000
KS ci ratio: 4.102367e-02	ci left: 4.673682e-01	ci right 4.870451e-01	k: 4772	n:10000
C17orf46   10000 perm   2 sec   (5652 perm/sec)   p_kst 4.772000e-01   p_cons 8.866000e-01   p_joint 8.916000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf46.2_1175_10000_0.4772_0.8866_0.8916.png
                gene_name: C17orf46
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 60 percent done.
C17orf48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.749955e-02	ci left: 3.080829e-01	ci right 3.264237e-01	k: 3172	n:10000
Cons ci ratio: 8.412142e-02	ci left: 1.708424e-01	ci right 1.859454e-01	k: 1783	n:10000
KS ci ratio: 1.844185e-02	ci left: 8.111081e-01	ci right 8.263058e-01	k: 8188	n:10000
C17orf48   10000 perm   2 sec   (6331 perm/sec)   p_kst 8.188000e-01   p_cons 1.783000e-01   p_joint 3.172000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf48.2_1041_10000_0.8188_0.1783_0.3172.png
                gene_name: C17orf48
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 63 percent done.
C17orf53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.988199e-02	ci left: 7.873578e-01	ci right 8.032698e-01	k: 7954	n:10000
Cons ci ratio: 4.168713e-02	ci left: 4.593790e-01	ci right 4.790390e-01	k: 4692	n:10000
KS ci ratio: 3.645266e-02	ci left: 5.263665e-01	ci right 5.460124e-01	k: 5362	n:10000
C17orf53   10000 perm   2 sec   (5555 perm/sec)   p_kst 5.362000e-01   p_cons 4.692000e-01   p_joint 7.954000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf53.2_1984_10000_0.5362_0.4692_0.7954.png
                gene_name: C17orf53
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 67 percent done.
C17orf59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.723193e-02	ci left: 2.450955e-01	ci right 2.622482e-01	k: 2536	n:10000
Cons ci ratio: 1.747592e-01	ci left: 4.370078e-02	ci right 5.216506e-02	k: 478	n:10000
KS ci ratio: 7.896600e-02	ci left: 1.898346e-01	ci right 2.055419e-01	k: 1976	n:10000
C17orf59   10000 perm   2 sec   (5702 perm/sec)   p_kst 1.976000e-01   p_cons 4.780000e-02   p_joint 2.536000e-01

Joint ci ratio: 5.365622e-02	ci left: 2.049666e-01	ci right 2.163177e-01	k: 4212	n:20000
Cons ci ratio: 1.166432e-01	ci left: 5.032418e-02	ci right 5.660644e-02	k: 1068	n:20000
KS ci ratio: 5.509237e-02	ci left: 1.964048e-01	ci right 2.075819e-01	k: 4039	n:20000
C17orf59   20000 perm   4 sec   (5253 perm/sec)   p_kst 2.019500e-01   p_cons 5.340000e-02   p_joint 2.106000e-01

Joint ci ratio: 3.787953e-02	ci left: 2.580577e-01	ci right 2.680549e-01	k: 7891	n:30000
Cons ci ratio: 9.460228e-02	ci left: 5.156679e-02	ci right 5.671998e-02	k: 1623	n:30000
KS ci ratio: 4.515104e-02	ci left: 1.962463e-01	ci right 2.053450e-01	k: 6023	n:30000
C17orf59   30000 perm   6 sec   (5000 perm/sec)   p_kst 2.007667e-01   p_cons 5.410000e-02   p_joint 2.630333e-01

Outputting figure to mutsig2_images.part000000000021/C17orf59.2_1078_30000_0.20077_0.0541_0.26303.png
                gene_name: C17orf59
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 70 percent done.
C17orf62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.749659e-02	ci left: 8.264586e-01	ci right 8.411464e-01	k: 8339	n:10000
KS ci ratio: 4.845369e-02	ci left: 3.858982e-01	ci right 4.051627e-01	k: 3955	n:10000
C17orf62   10000 perm   1 sec   (7073 perm/sec)   p_kst 3.955000e-01   p_cons 8.339000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000021/C17orf62.2_588_10000_0.3955_0.8339_1.png
                gene_name: C17orf62
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
C17orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.813102e-02	ci left: 3.890841e-01	ci right 4.083750e-01	k: 3987	n:10000
Cons ci ratio: 1.085277e-01	ci left: 1.091029e-01	ci right 1.217221e-01	k: 1153	n:10000
KS ci ratio: 1.242968e-02	ci left: 9.028849e-01	ci right 9.142758e-01	k: 9087	n:10000
C17orf63   10000 perm   2 sec   (5918 perm/sec)   p_kst 9.087000e-01   p_cons 1.153000e-01   p_joint 3.987000e-01

Joint ci ratio: 5.130325e-02	ci left: 2.201197e-01	ci right 2.317601e-01	k: 4518	n:20000
Cons ci ratio: 7.612818e-02	ci left: 1.125763e-01	ci right 1.215353e-01	k: 2340	n:20000
KS ci ratio: 8.903577e-03	ci left: 9.023809e-01	ci right 9.105005e-01	k: 18130	n:20000
C17orf63   20000 perm   4 sec   (5198 perm/sec)   p_kst 9.065000e-01   p_cons 1.170000e-01   p_joint 2.259000e-01

Outputting figure to mutsig2_images.part000000000021/C17orf63.2_1696_20000_0.9065_0.117_0.2259.png
                gene_name: C17orf63
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 77 percent done.
C17orf95
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.671020e-02	ci left: 6.736771e-01	ci right 6.920163e-01	k: 6829	n:10000
KS ci ratio: 8.847932e-03	ci left: 9.472103e-01	ci right 9.557242e-01	k: 9516	n:10000
C17orf95   10000 perm   2 sec   (6148 perm/sec)   p_kst 9.516000e-01   p_cons 6.829000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000021/C17orf95.2_589_10000_0.9516_0.6829_1.png
                gene_name: C17orf95
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
C18orf54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.477092e-02	ci left: 5.498039e-01	ci right 5.693614e-01	k: 5596	n:10000
Cons ci ratio: 3.618240e-02	ci left: 5.300710e-01	ci right 5.497057e-01	k: 5399	n:10000
KS ci ratio: 7.731236e-02	ci left: 1.965332e-01	ci right 2.124394e-01	k: 2044	n:10000
C18orf54   10000 perm   2 sec   (6134 perm/sec)   p_kst 2.044000e-01   p_cons 5.399000e-01   p_joint 5.596000e-01

Outputting figure to mutsig2_images.part000000000021/C18orf54.2_1147_10000_0.2044_0.5399_0.5596.png
                gene_name: C18orf54
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 83 percent done.
C18orf8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
Cons ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
KS ci ratio: 2.142107e-01	ci left: 2.892165e-02	ci right 3.595419e-02	k: 323	n:10000
C18orf8   10000 perm   2 sec   (5643 perm/sec)   p_kst 3.230000e-02   p_cons 1.610000e-02   p_joint 8.600000e-03

Joint ci ratio: 2.067861e-01	ci left: 1.582303e-02	ci right 1.951911e-02	k: 352	n:20000
Cons ci ratio: 2.126892e-01	ci left: 1.492218e-02	ci right 1.852030e-02	k: 333	n:20000
KS ci ratio: 1.529431e-01	ci left: 2.936331e-02	ci right 3.427405e-02	k: 635	n:20000
C18orf8   20000 perm   4 sec   (4848 perm/sec)   p_kst 3.175000e-02   p_cons 1.665000e-02   p_joint 1.760000e-02

Joint ci ratio: 3.305211e-01	ci left: 3.896494e-03	ci right 5.468466e-03	k: 139	n:30000
Cons ci ratio: 1.749082e-01	ci left: 1.502500e-02	ci right 1.793639e-02	k: 493	n:30000
KS ci ratio: 1.254227e-01	ci left: 2.955233e-02	ci right 3.353907e-02	k: 945	n:30000
C18orf8   30000 perm   7 sec   (4497 perm/sec)   p_kst 3.150000e-02   p_cons 1.643333e-02   p_joint 4.633333e-03

Joint ci ratio: 3.122316e-01	ci left: 3.312947e-03	ci right 4.560770e-03	k: 156	n:40000
Cons ci ratio: 1.506252e-01	ci left: 1.539466e-02	ci right 1.792621e-02	k: 665	n:40000
KS ci ratio: 1.085456e-01	ci left: 2.985858e-02	ci right 3.330986e-02	k: 1262	n:40000
C18orf8   40000 perm   9 sec   (4232 perm/sec)   p_kst 3.155000e-02   p_cons 1.662500e-02   p_joint 3.900000e-03

Joint ci ratio: 2.787349e-01	ci left: 3.391256e-03	ci right 4.507551e-03	k: 196	n:50000
Cons ci ratio: 1.336260e-01	ci left: 1.578830e-02	ci right 1.806828e-02	k: 845	n:50000
KS ci ratio: 9.723753e-02	ci left: 2.994722e-02	ci right 3.302750e-02	k: 1573	n:50000
C18orf8   50000 perm   12 sec   (4177 perm/sec)   p_kst 3.146000e-02   p_cons 1.690000e-02   p_joint 3.920000e-03

Joint ci ratio: 2.795400e-01	ci left: 2.810424e-03	ci right 3.738651e-03	k: 195	n:60000
Cons ci ratio: 1.225496e-01	ci left: 1.573823e-02	ci right 1.780889e-02	k: 1005	n:60000
KS ci ratio: 8.907758e-02	ci left: 2.987217e-02	ci right 3.267341e-02	k: 1875	n:60000
C18orf8   60000 perm   15 sec   (4099 perm/sec)   p_kst 3.125000e-02   p_cons 1.675000e-02   p_joint 3.250000e-03

Joint ci ratio: 2.591834e-01	ci left: 2.835251e-03	ci right 3.692457e-03	k: 227	n:70000
Cons ci ratio: 1.128574e-01	ci left: 1.598584e-02	ci right 1.791165e-02	k: 1185	n:70000
KS ci ratio: 8.254130e-02	ci left: 2.992438e-02	ci right 3.251467e-02	k: 2184	n:70000
C18orf8   70000 perm   17 sec   (4005 perm/sec)   p_kst 3.120000e-02   p_cons 1.692857e-02   p_joint 3.242857e-03

Joint ci ratio: 2.146897e-01	ci left: 3.704506e-03	ci right 4.607037e-03	k: 331	n:80000
Cons ci ratio: 1.063465e-01	ci left: 1.581115e-02	ci right 1.759914e-02	k: 1335	n:80000
KS ci ratio: 7.716483e-02	ci left: 3.004282e-02	ci right 3.246633e-02	k: 2499	n:80000
C18orf8   80000 perm   20 sec   (3953 perm/sec)   p_kst 3.123750e-02   p_cons 1.668750e-02   p_joint 4.137500e-03

Joint ci ratio: 2.059005e-01	ci left: 3.598131e-03	ci right 4.434336e-03	k: 360	n:90000
Cons ci ratio: 1.007084e-01	ci left: 1.572114e-02	ci right 1.739911e-02	k: 1489	n:90000
KS ci ratio: 7.289232e-02	ci left: 2.999732e-02	ci right 3.227748e-02	k: 2801	n:90000
C18orf8   90000 perm   23 sec   (3863 perm/sec)   p_kst 3.112222e-02   p_cons 1.654444e-02   p_joint 4.000000e-03

Joint ci ratio: 1.946320e-01	ci left: 3.646778e-03	ci right 4.442413e-03	k: 403	n:100000
Cons ci ratio: 9.585157e-02	ci left: 1.566092e-02	ci right 1.724731e-02	k: 1644	n:100000
KS ci ratio: 6.910977e-02	ci left: 3.009172e-02	ci right 3.225558e-02	k: 3116	n:100000
C18orf8   100000 perm   26 sec   (3797 perm/sec)   p_kst 3.116000e-02   p_cons 1.644000e-02   p_joint 4.030000e-03

Joint ci ratio: 1.865037e-01	ci left: 3.626913e-03	ci right 4.381427e-03	k: 439	n:110000
Cons ci ratio: 9.122448e-02	ci left: 1.575542e-02	ci right 1.727023e-02	k: 1815	n:110000
KS ci ratio: 6.603987e-02	ci left: 3.001045e-02	ci right 3.206892e-02	k: 3413	n:110000
C18orf8   110000 perm   29 sec   (3750 perm/sec)   p_kst 3.102727e-02   p_cons 1.650000e-02   p_joint 3.990909e-03

Joint ci ratio: 1.904860e-01	ci left: 3.181677e-03	ci right 3.859333e-03	k: 421	n:120000
Cons ci ratio: 8.763569e-02	ci left: 1.568078e-02	ci right 1.712606e-02	k: 1967	n:120000
KS ci ratio: 6.355816e-02	ci left: 2.974758e-02	ci right 3.170851e-02	k: 3686	n:120000
C18orf8   120000 perm   32 sec   (3703 perm/sec)   p_kst 3.071667e-02   p_cons 1.639167e-02   p_joint 3.508333e-03

Joint ci ratio: 1.702487e-01	ci left: 3.715697e-03	ci right 4.414402e-03	k: 527	n:130000
Cons ci ratio: 8.431838e-02	ci left: 1.566382e-02	ci right 1.705019e-02	k: 2125	n:130000
KS ci ratio: 6.136054e-02	ci left: 2.950368e-02	ci right 3.137888e-02	k: 3956	n:130000
C18orf8   130000 perm   36 sec   (3648 perm/sec)   p_kst 3.043077e-02   p_cons 1.634615e-02   p_joint 4.053846e-03

Joint ci ratio: 1.625718e-01	ci left: 3.799424e-03	ci right 4.478509e-03	k: 578	n:140000
Cons ci ratio: 8.095588e-02	ci left: 1.580417e-02	ci right 1.714454e-02	k: 2305	n:140000
KS ci ratio: 5.926048e-02	ci left: 2.940827e-02	ci right 3.121125e-02	k: 4242	n:140000
C18orf8   140000 perm   39 sec   (3602 perm/sec)   p_kst 3.030000e-02   p_cons 1.646429e-02   p_joint 4.128571e-03

Joint ci ratio: 1.577448e-01	ci left: 3.776507e-03	ci right 4.429557e-03	k: 614	n:150000
Cons ci ratio: 7.817407e-02	ci left: 1.584175e-02	ci right 1.713704e-02	k: 2472	n:150000
KS ci ratio: 5.714791e-02	ci left: 2.954350e-02	ci right 3.128805e-02	k: 4561	n:150000
C18orf8   150000 perm   42 sec   (3553 perm/sec)   p_kst 3.040667e-02   p_cons 1.648000e-02   p_joint 4.093333e-03

Joint ci ratio: 1.523863e-01	ci left: 3.804811e-03	ci right 4.438366e-03	k: 658	n:160000
Cons ci ratio: 7.583607e-02	ci left: 1.580172e-02	ci right 1.705339e-02	k: 2627	n:160000
KS ci ratio: 5.537512e-02	ci left: 2.952715e-02	ci right 3.121492e-02	k: 4858	n:160000
C18orf8   160000 perm   46 sec   (3506 perm/sec)   p_kst 3.036250e-02   p_cons 1.641875e-02   p_joint 4.112500e-03

Joint ci ratio: 1.477504e-01	ci left: 3.818783e-03	ci right 4.433611e-03	k: 700	n:170000
Cons ci ratio: 7.352163e-02	ci left: 1.584200e-02	ci right 1.705692e-02	k: 2795	n:170000
KS ci ratio: 5.370400e-02	ci left: 2.957153e-02	ci right 3.120924e-02	k: 5165	n:170000
C18orf8   170000 perm   49 sec   (3461 perm/sec)   p_kst 3.038235e-02   p_cons 1.644118e-02   p_joint 4.117647e-03

Joint ci ratio: 1.431270e-01	ci left: 3.852891e-03	ci right 4.452141e-03	k: 746	n:180000
Cons ci ratio: 7.134577e-02	ci left: 1.590561e-02	ci right 1.708781e-02	k: 2968	n:180000
KS ci ratio: 5.230385e-02	ci left: 2.946905e-02	ci right 3.105724e-02	k: 5446	n:180000
C18orf8   180000 perm   53 sec   (3415 perm/sec)   p_kst 3.025556e-02   p_cons 1.648889e-02   p_joint 4.144444e-03

Joint ci ratio: 1.398001e-01	ci left: 3.832872e-03	ci right 4.413997e-03	k: 782	n:190000
Cons ci ratio: 6.939724e-02	ci left: 1.594230e-02	ci right 1.709357e-02	k: 3137	n:190000
KS ci ratio: 5.086602e-02	ci left: 2.953899e-02	ci right 3.108591e-02	k: 5758	n:190000
C18orf8   190000 perm   56 sec   (3370 perm/sec)   p_kst 3.030526e-02   p_cons 1.651053e-02   p_joint 4.115789e-03

Joint ci ratio: 1.373701e-01	ci left: 3.776366e-03	ci right 4.338158e-03	k: 810	n:200000
Cons ci ratio: 6.775652e-02	ci left: 1.590197e-02	ci right 1.702211e-02	k: 3291	n:200000
KS ci ratio: 4.966731e-02	ci left: 2.945429e-02	ci right 3.095937e-02	k: 6040	n:200000
C18orf8   200000 perm   60 sec   (3325 perm/sec)   p_kst 3.020000e-02   p_cons 1.645500e-02   p_joint 4.050000e-03

Joint ci ratio: 1.345802e-01	ci left: 3.752933e-03	ci right 4.298992e-03	k: 844	n:210000
Cons ci ratio: 6.628562e-02	ci left: 1.583767e-02	ci right 1.692812e-02	k: 3439	n:210000
KS ci ratio: 4.845478e-02	ci left: 2.949098e-02	ci right 3.096012e-02	k: 6346	n:210000
C18orf8   210000 perm   64 sec   (3280 perm/sec)   p_kst 3.021905e-02   p_cons 1.637619e-02   p_joint 4.019048e-03

Joint ci ratio: 1.320290e-01	ci left: 3.727340e-03	ci right 4.258587e-03	k: 877	n:220000
Cons ci ratio: 6.479644e-02	ci left: 1.583313e-02	ci right 1.689785e-02	k: 3599	n:220000
KS ci ratio: 4.734528e-02	ci left: 2.950228e-02	ci right 3.093741e-02	k: 6647	n:220000
C18orf8   220000 perm   68 sec   (3229 perm/sec)   p_kst 3.021364e-02   p_cons 1.635909e-02   p_joint 3.986364e-03

Joint ci ratio: 1.299762e-01	ci left: 3.683025e-03	ci right 4.199165e-03	k: 905	n:230000
Cons ci ratio: 6.348921e-02	ci left: 1.578643e-02	ci right 1.682581e-02	k: 3749	n:230000
KS ci ratio: 4.634994e-02	ci left: 2.946136e-02	ci right 3.086356e-02	k: 6936	n:230000
C18orf8   230000 perm   72 sec   (3184 perm/sec)   p_kst 3.015652e-02   p_cons 1.630000e-02   p_joint 3.934783e-03

Joint ci ratio: 1.305669e-01	ci left: 3.497297e-03	ci right 3.989807e-03	k: 897	n:240000
Cons ci ratio: 6.220129e-02	ci left: 1.577254e-02	ci right 1.678919e-02	k: 3906	n:240000
KS ci ratio: 4.549606e-02	ci left: 2.932112e-02	ci right 3.069026e-02	k: 7200	n:240000
C18orf8   240000 perm   77 sec   (3100 perm/sec)   p_kst 3.000000e-02   p_cons 1.627500e-02   p_joint 3.737500e-03

Joint ci ratio: 1.251021e-01	ci left: 3.667195e-03	ci right 4.160415e-03	k: 977	n:250000
Cons ci ratio: 6.108810e-02	ci left: 1.570875e-02	ci right 1.670252e-02	k: 4050	n:250000
KS ci ratio: 4.456167e-02	ci left: 2.935455e-02	ci right 3.069638e-02	k: 7505	n:250000
C18orf8   250000 perm   82 sec   (3043 perm/sec)   p_kst 3.002000e-02   p_cons 1.620000e-02   p_joint 3.908000e-03

Joint ci ratio: 1.224385e-01	ci left: 3.686416e-03	ci right 4.170899e-03	k: 1020	n:260000
Cons ci ratio: 5.982277e-02	ci left: 1.575990e-02	ci right 1.673554e-02	k: 4223	n:260000
KS ci ratio: 4.367682e-02	ci left: 2.939328e-02	ci right 3.070953e-02	k: 7812	n:260000
C18orf8   260000 perm   87 sec   (2994 perm/sec)   p_kst 3.004615e-02   p_cons 1.624231e-02   p_joint 3.923077e-03

Joint ci ratio: 1.203361e-01	ci left: 3.679166e-03	ci right 4.153803e-03	k: 1056	n:270000
Cons ci ratio: 5.865328e-02	ci left: 1.579651e-02	ci right 1.675465e-02	k: 4393	n:270000
KS ci ratio: 4.288626e-02	ci left: 2.937075e-02	ci right 3.066159e-02	k: 8103	n:270000
C18orf8   270000 perm   91 sec   (2959 perm/sec)   p_kst 3.001111e-02   p_cons 1.627037e-02   p_joint 3.911111e-03

Joint ci ratio: 1.184473e-01	ci left: 3.665568e-03	ci right 4.130508e-03	k: 1090	n:280000
Cons ci ratio: 5.748581e-02	ci left: 1.586589e-02	ci right 1.680844e-02	k: 4573	n:280000
KS ci ratio: 4.205456e-02	ci left: 2.946314e-02	ci right 3.073233e-02	k: 8426	n:280000
C18orf8   280000 perm   96 sec   (2924 perm/sec)   p_kst 3.009286e-02   p_cons 1.633214e-02   p_joint 3.892857e-03

Joint ci ratio: 1.169582e-01	ci left: 3.632874e-03	ci right 4.087474e-03	k: 1118	n:290000
Cons ci ratio: 5.654886e-02	ci left: 1.583885e-02	ci right 1.676396e-02	k: 4726	n:290000
KS ci ratio: 4.132548e-02	ci left: 2.947087e-02	ci right 3.071786e-02	k: 8726	n:290000
C18orf8   290000 perm   100 sec   (2890 perm/sec)   p_kst 3.008966e-02   p_cons 1.629655e-02   p_joint 3.855172e-03

Joint ci ratio: 1.150716e-01	ci left: 3.631532e-03	ci right 4.078136e-03	k: 1155	n:300000
Cons ci ratio: 5.565048e-02	ci left: 1.581701e-02	ci right 1.672570e-02	k: 4880	n:300000
KS ci ratio: 4.053362e-02	ci left: 2.962018e-02	ci right 3.084891e-02	k: 9069	n:300000
C18orf8   300000 perm   105 sec   (2857 perm/sec)   p_kst 3.023000e-02   p_cons 1.626667e-02   p_joint 3.850000e-03

Joint ci ratio: 1.132258e-01	ci left: 3.633467e-03	ci right 4.072662e-03	k: 1193	n:310000
Cons ci ratio: 5.469980e-02	ci left: 1.585080e-02	ci right 1.674538e-02	k: 5051	n:310000
KS ci ratio: 3.986207e-02	ci left: 2.964826e-02	ci right 3.085731e-02	k: 9377	n:310000
C18orf8   310000 perm   110 sec   (2824 perm/sec)   p_kst 3.024839e-02   p_cons 1.629355e-02   p_joint 3.848387e-03

Joint ci ratio: 1.110595e-01	ci left: 3.662680e-03	ci right 4.096381e-03	k: 1240	n:320000
Cons ci ratio: 5.391178e-02	ci left: 1.581475e-02	ci right 1.669404e-02	k: 5200	n:320000
KS ci ratio: 3.918946e-02	ci left: 2.972427e-02	ci right 3.091551e-02	k: 9701	n:320000
C18orf8   320000 perm   115 sec   (2790 perm/sec)   p_kst 3.031562e-02   p_cons 1.625000e-02   p_joint 3.875000e-03

Joint ci ratio: 1.090130e-01	ci left: 3.690197e-03	ci right 4.118588e-03	k: 1287	n:330000
Cons ci ratio: 5.301100e-02	ci left: 1.586771e-02	ci right 1.673475e-02	k: 5378	n:330000
KS ci ratio: 3.851217e-02	ci left: 2.985287e-02	ci right 3.102812e-02	k: 10044	n:330000
C18orf8   330000 perm   120 sec   (2754 perm/sec)   p_kst 3.043636e-02   p_cons 1.629697e-02   p_joint 3.900000e-03

Joint ci ratio: 1.076846e-01	ci left: 3.673227e-03	ci right 4.094122e-03	k: 1319	n:340000
Cons ci ratio: 5.216822e-02	ci left: 1.590896e-02	ci right 1.676402e-02	k: 5553	n:340000
KS ci ratio: 3.792910e-02	ci left: 2.988082e-02	ci right 3.103897e-02	k: 10355	n:340000
C18orf8   340000 perm   126 sec   (2709 perm/sec)   p_kst 3.045588e-02   p_cons 1.633235e-02   p_joint 3.879412e-03

Joint ci ratio: 1.059718e-01	ci left: 3.687853e-03	ci right 4.103284e-03	k: 1362	n:350000
Cons ci ratio: 5.139634e-02	ci left: 1.592821e-02	ci right 1.677126e-02	k: 5721	n:350000
KS ci ratio: 3.735549e-02	ci left: 2.993277e-02	ci right 3.107502e-02	k: 10675	n:350000
C18orf8   350000 perm   131 sec   (2675 perm/sec)   p_kst 3.050000e-02   p_cons 1.634571e-02   p_joint 3.891429e-03

Joint ci ratio: 5.081583e-02	ci left: 1.584772e-02	ci right 1.667676e-02	k: 5853	n:360000
Cons ci ratio: 5.063151e-02	ci left: 1.596293e-02	ci right 1.679488e-02	k: 5895	n:360000
KS ci ratio: 3.683652e-02	ci left: 2.993517e-02	ci right 3.106130e-02	k: 10978	n:360000
C18orf8   360000 perm   136 sec   (2644 perm/sec)   p_kst 3.049444e-02   p_cons 1.637500e-02   p_joint 1.625833e-02

Outputting figure to mutsig2_images.part000000000021/C18orf8.2_2054_360000_0.030494_0.016375_0.016258.png
                gene_name: C18orf8
               theta_stop: 0.051 
                    nperm: 360000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 87 percent done.
C19orf18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.682941e-02	ci left: 1.618987e-01	ci right 1.766945e-01	k: 1692	n:10000
Cons ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
KS ci ratio: 1.219088e-01	ci left: 8.796014e-02	ci right 9.947780e-02	k: 936	n:10000
C19orf18   10000 perm   1 sec   (6675 perm/sec)   p_kst 9.360000e-02   p_cons 7.400000e-02   p_joint 1.692000e-01

Joint ci ratio: 4.832532e-02	ci left: 2.415310e-01	ci right 2.535424e-01	k: 4950	n:20000
Cons ci ratio: 9.630520e-02	ci left: 7.280418e-02	ci right 8.021950e-02	k: 1529	n:20000
KS ci ratio: 8.676735e-02	ci left: 8.856807e-02	ci right 9.665082e-02	k: 1851	n:20000
C19orf18   20000 perm   3 sec   (5785 perm/sec)   p_kst 9.255000e-02   p_cons 7.645000e-02   p_joint 2.475000e-01

Outputting figure to mutsig2_images.part000000000021/C19orf18.2_672_20000_0.09255_0.07645_0.2475.png
                gene_name: C19orf18
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 90 percent done.
C19orf2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.148904e-02	ci left: 1.479580e-01	ci right 1.622435e-01	k: 1550	n:10000
Cons ci ratio: 1.126523e-01	ci left: 1.018840e-01	ci right 1.141454e-01	k: 1079	n:10000
KS ci ratio: 1.777363e-02	ci left: 8.219835e-01	ci right 8.368241e-01	k: 8295	n:10000
C19orf2   10000 perm   2 sec   (4756 perm/sec)   p_kst 8.295000e-01   p_cons 1.079000e-01   p_joint 1.550000e-01

Joint ci ratio: 7.449765e-02	ci left: 1.170516e-01	ci right 1.261587e-01	k: 2431	n:20000
Cons ci ratio: 7.965873e-02	ci left: 1.036815e-01	ci right 1.123328e-01	k: 2159	n:20000
KS ci ratio: 1.281532e-02	ci left: 8.185491e-01	ci right 8.291566e-01	k: 16478	n:20000
C19orf2   20000 perm   5 sec   (4221 perm/sec)   p_kst 8.239000e-01   p_cons 1.079500e-01   p_joint 1.215500e-01

Outputting figure to mutsig2_images.part000000000021/C19orf2.2_1652_20000_0.8239_0.10795_0.12155.png
                gene_name: C19orf2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 93 percent done.
C19orf21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.686766e-02	ci left: 8.365345e-01	ci right 8.508647e-01	k: 8438	n:10000
KS ci ratio: 4.700555e-02	ci left: 4.004372e-01	ci right 4.198151e-01	k: 4101	n:10000
C19orf21   10000 perm   2 sec   (4414 perm/sec)   p_kst 4.101000e-01   p_cons 8.438000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000021/C19orf21.2_2056_10000_0.4101_0.8438_1.png
                gene_name: C19orf21
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
C19orf40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.320499e-02	ci left: 7.317890e-01	ci right 7.490707e-01	k: 7405	n:10000
KS ci ratio: 5.358556e-02	ci left: 3.391561e-01	ci right 3.579322e-01	k: 3485	n:10000
C19orf40   10000 perm   2 sec   (6446 perm/sec)   p_kst 3.485000e-01   p_cons 7.405000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000021/C19orf40.2_664_10000_0.3485_0.7405_1.png
                gene_name: C19orf40
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000021
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 21 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1704>
Subject: Job 9893853: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1704>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000022> was used as the working directory.
Started at Fri Oct  5 23:56:12 2012
Results reported at Sat Oct  6 00:04:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000022.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000022.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 22  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000022.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    528.89 sec.
    Max Memory :      3591 MB
    Max Swap   :      5938 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
22
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 22
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 22: processing genes 1894 - 1983
Calculating significance of each gene.
Using projection method.
1894	C19orf43	3.492170e-02
1895	C19orf44	6.763804e-01
1896	C19orf45	1
1897	C19orf46	6.301869e-01
1898	C19orf47	1
1899	C19orf48	1
1900	C19orf50	1
1901	C19orf51	1
1902	C19orf52	1
1903	C19orf53	3.011431e-01
1904	C19orf54	1
1905	C19orf55	3.187735e-01
1906	C19orf56	1
1907	C19orf57	1
1908	C19orf59	1
1909	C19orf6	1
1910	C19orf60	1
1911	C19orf61	5.415421e-01
1912	C19orf62	3.347991e-01
1913	C19orf63	5.260114e-01
1914	C19orf66	6.033417e-01
1915	C19orf70	1
1916	C19orf73	4.322395e-01
1917	C19orf75	2.067882e-02
1918	C19orf76	1.175344e-01
1919	C1D	1
1920	C1GALT1	1
1921	C1GALT1C1	3.081854e-01
1922	C1QA	1
1923	C1QB	6.344298e-01
1924	C1QBP	1
1925	C1QC	1.755745e-01
1926	C1QL1	1
1927	C1QL2	6.518410e-01
1928	C1QL3	1
1929	C1QL4	6.714819e-01
1930	C1QTNF1	2.165524e-01
1931	C1QTNF2	1
1932	C1QTNF3	7.071065e-01
1933	C1QTNF4	1
1934	C1QTNF5	1
1935	C1QTNF6	8.819401e-01
1936	C1QTNF7	6.286928e-01
1937	C1QTNF8	1
1938	C1QTNF9	1
1939	C1QTNF9B	5.006352e-01
1940	C1R	7.311681e-01
1941	C1RL	4.195474e-01
1942	C1S	1.009879e-01
1943	C1orf100	1.819951e-01
1944	C1orf101	3.097420e-01
1945	C1orf103	3.617289e-01
1946	C1orf104	4.767027e-01
1947	C1orf105	1
1948	C1orf106	8.785266e-01
1949	C1orf107	5.374413e-01
1950	C1orf109	1
1951	C1orf110	1
1952	C1orf111	6.691785e-01
1953	C1orf112	3.404272e-01
1954	C1orf113	5.427282e-02
1955	C1orf114	1.133096e-01
1956	C1orf115	2.460675e-01
1957	C1orf116	6.781990e-01
1958	C1orf122	1
1959	C1orf123	1
1960	C1orf124	4.392937e-01
1961	C1orf125	1.347884e-01
1962	C1orf127	7.721012e-01
1963	C1orf128	1.341149e-01
1964	C1orf129	3.922257e-02
1965	C1orf130	3.952616e-02
1966	C1orf131	2.660400e-01
1967	C1orf135	4.252201e-01
1968	C1orf14	8.020630e-01
1969	C1orf141	2.830595e-01
1970	C1orf144	3.205710e-01
1971	C1orf146	3.965113e-01
1972	C1orf150	5.890342e-02
1973	C1orf151	1
1974	C1orf156	5.838903e-01
1975	C1orf158	1
1976	C1orf159	1
1977	C1orf161	7.699136e-01
1978	C1orf162	3.753217e-01
1979	C1orf163	1
1980	C1orf168	4.260626e-01
1981	C1orf172	8.028177e-01
1982	C1orf173	9.783976e-02
1983	C1orf174	7.745669e-01
Done

Running MutSig 2:
Scatter job 22: processing genes 1894 - 1983
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C1orf173
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.376227e-01	ci left: 1.105573e-02	ci right 1.563427e-02	k: 132	n:10000
Cons ci ratio: 2.989652e-01	ci left: 1.437251e-02	ci right 1.951444e-02	k: 168	n:10000
KS ci ratio: 2.034267e-01	ci left: 3.214923e-02	ci right 3.952436e-02	k: 357	n:10000
C1orf173   10000 perm   2 sec   (4213 perm/sec)   p_kst 3.570000e-02   p_cons 1.680000e-02   p_joint 1.320000e-02

Joint ci ratio: 3.523572e-01	ci left: 5.068179e-03	ci right 7.279094e-03	k: 122	n:20000
Cons ci ratio: 2.032964e-01	ci left: 1.639270e-02	ci right 2.014922e-02	k: 364	n:20000
KS ci ratio: 1.433295e-01	ci left: 3.346084e-02	ci right 3.867516e-02	k: 720	n:20000
C1orf173   20000 perm   8 sec   (2635 perm/sec)   p_kst 3.600000e-02   p_cons 1.820000e-02   p_joint 6.100000e-03

Joint ci ratio: 3.061978e-01	ci left: 4.602231e-03	ci right 6.295715e-03	k: 162	n:30000
Cons ci ratio: 1.630588e-01	ci left: 1.735716e-02	ci right 2.047033e-02	k: 566	n:30000
KS ci ratio: 1.170570e-01	ci left: 3.392034e-02	ci right 3.817013e-02	k: 1080	n:30000
C1orf173   30000 perm   11 sec   (2812 perm/sec)   p_kst 3.600000e-02   p_cons 1.886667e-02   p_joint 5.400000e-03

Joint ci ratio: 1.738547e-01	ci left: 1.145814e-02	ci right 1.366347e-02	k: 501	n:40000
Cons ci ratio: 1.427612e-01	ci left: 1.717789e-02	ci right 1.984267e-02	k: 739	n:40000
KS ci ratio: 1.009877e-01	ci left: 3.446392e-02	ci right 3.815379e-02	k: 1451	n:40000
C1orf173   40000 perm   14 sec   (2946 perm/sec)   p_kst 3.627500e-02   p_cons 1.847500e-02   p_joint 1.252500e-02

Joint ci ratio: 1.805451e-01	ci left: 8.496340e-03	ci right 1.020135e-02	k: 466	n:50000
Cons ci ratio: 1.385381e-01	ci left: 1.466719e-02	ci right 1.686955e-02	k: 787	n:50000
KS ci ratio: 8.720780e-02	ci left: 3.714368e-02	ci right 4.055013e-02	k: 1941	n:50000
C1orf173   50000 perm   16 sec   (3035 perm/sec)   p_kst 3.882000e-02   p_cons 1.574000e-02   p_joint 9.320000e-03

Joint ci ratio: 1.772757e-01	ci left: 7.366459e-03	ci right 8.815062e-03	k: 484	n:60000
Cons ci ratio: 1.272630e-01	ci left: 1.457515e-02	ci right 1.657210e-02	k: 933	n:60000
KS ci ratio: 7.907102e-02	ci left: 3.779193e-02	ci right 4.091950e-02	k: 2360	n:60000
C1orf173   60000 perm   19 sec   (3085 perm/sec)   p_kst 3.933333e-02   p_cons 1.555000e-02   p_joint 8.066667e-03

Joint ci ratio: 1.739797e-01	ci left: 6.573365e-03	ci right 7.839429e-03	k: 503	n:70000
Cons ci ratio: 1.190307e-01	ci left: 1.434825e-02	ci right 1.617797e-02	k: 1067	n:70000
KS ci ratio: 7.312965e-02	ci left: 3.798483e-02	ci right 4.088208e-02	k: 2759	n:70000
C1orf173   70000 perm   23 sec   (3110 perm/sec)   p_kst 3.941429e-02   p_cons 1.524286e-02   p_joint 7.185714e-03

Joint ci ratio: 1.653661e-01	ci left: 6.397993e-03	ci right 7.563191e-03	k: 557	n:80000
Cons ci ratio: 1.121185e-01	ci left: 1.420554e-02	ci right 1.590490e-02	k: 1203	n:80000
KS ci ratio: 6.883120e-02	ci left: 3.761980e-02	ci right 4.031377e-02	k: 3116	n:80000
C1orf173   80000 perm   26 sec   (3121 perm/sec)   p_kst 3.895000e-02   p_cons 1.503750e-02   p_joint 6.962500e-03

Joint ci ratio: 1.755265e-01	ci left: 5.027257e-03	ci right 6.005030e-03	k: 495	n:90000
Cons ci ratio: 1.020396e-01	ci left: 1.530946e-02	ci right 1.696638e-02	k: 1451	n:90000
KS ci ratio: 6.464218e-02	ci left: 3.798516e-02	ci right 4.053353e-02	k: 3532	n:90000
C1orf173   90000 perm   29 sec   (3117 perm/sec)   p_kst 3.924444e-02   p_cons 1.612222e-02   p_joint 5.500000e-03

Joint ci ratio: 1.761113e-01	ci left: 4.495741e-03	ci right 5.373352e-03	k: 492	n:100000
Cons ci ratio: 9.644943e-02	ci left: 1.546565e-02	ci right 1.704259e-02	k: 1624	n:100000
KS ci ratio: 6.112716e-02	ci left: 3.829127e-02	ci right 4.071553e-02	k: 3949	n:100000
C1orf173   100000 perm   32 sec   (3109 perm/sec)   p_kst 3.949000e-02   p_cons 1.624000e-02   p_joint 4.920000e-03

Joint ci ratio: 1.320676e-01	ci left: 7.420461e-03	ci right 8.478457e-03	k: 873	n:110000
Cons ci ratio: 9.197404e-02	ci left: 1.549773e-02	ci right 1.700066e-02	k: 1786	n:110000
KS ci ratio: 5.855663e-02	ci left: 3.799801e-02	ci right 4.029909e-02	k: 4305	n:110000
C1orf173   110000 perm   35 sec   (3099 perm/sec)   p_kst 3.913636e-02   p_cons 1.623636e-02   p_joint 7.936364e-03

Joint ci ratio: 1.425939e-01	ci left: 5.811900e-03	ci right 6.712211e-03	k: 750	n:120000
Cons ci ratio: 8.795430e-02	ci left: 1.556664e-02	ci right 1.700688e-02	k: 1953	n:120000
KS ci ratio: 5.602311e-02	ci left: 3.810072e-02	ci right 4.030495e-02	k: 4703	n:120000
C1orf173   120000 perm   39 sec   (3084 perm/sec)   p_kst 3.919167e-02   p_cons 1.627500e-02   p_joint 6.250000e-03

Joint ci ratio: 1.373045e-01	ci left: 5.802787e-03	ci right 6.665615e-03	k: 809	n:130000
Cons ci ratio: 8.429823e-02	ci left: 1.567135e-02	ci right 1.705804e-02	k: 2126	n:130000
KS ci ratio: 5.393553e-02	ci left: 3.799204e-02	ci right 4.010551e-02	k: 5075	n:130000
C1orf173   130000 perm   42 sec   (3068 perm/sec)   p_kst 3.903846e-02   p_cons 1.635385e-02   p_joint 6.223077e-03

Joint ci ratio: 1.343641e-01	ci left: 5.636674e-03	ci right 6.455416e-03	k: 845	n:140000
Cons ci ratio: 8.095588e-02	ci left: 1.580417e-02	ci right 1.714454e-02	k: 2305	n:140000
KS ci ratio: 5.195116e-02	ci left: 3.806243e-02	ci right 4.009958e-02	k: 5470	n:140000
C1orf173   140000 perm   46 sec   (3050 perm/sec)   p_kst 3.907143e-02   p_cons 1.646429e-02   p_joint 6.035714e-03

Joint ci ratio: 1.334429e-01	ci left: 5.338160e-03	ci right 6.107802e-03	k: 857	n:150000
Cons ci ratio: 7.830295e-02	ci left: 1.578944e-02	ci right 1.708268e-02	k: 2464	n:150000
KS ci ratio: 5.010420e-02	ci left: 3.822347e-02	ci right 4.019439e-02	k: 5880	n:150000
C1orf173   150000 perm   50 sec   (3028 perm/sec)   p_kst 3.920000e-02   p_cons 1.642667e-02   p_joint 5.713333e-03

Joint ci ratio: 1.018054e-01	ci left: 8.713600e-03	ci right 9.654315e-03	k: 1468	n:160000
Cons ci ratio: 7.436789e-02	ci left: 1.643358e-02	ci right 1.770901e-02	k: 2730	n:160000
KS ci ratio: 4.857798e-02	ci left: 3.815547e-02	ci right 4.006128e-02	k: 6256	n:160000
C1orf173   160000 perm   53 sec   (3004 perm/sec)   p_kst 3.910000e-02   p_cons 1.706250e-02   p_joint 9.175000e-03

Joint ci ratio: 1.124774e-01	ci left: 6.694925e-03	ci right 7.498493e-03	k: 1205	n:170000
Cons ci ratio: 7.433675e-02	ci left: 1.549548e-02	ci right 1.669757e-02	k: 2735	n:170000
KS ci ratio: 4.718322e-02	ci left: 3.809628e-02	ci right 3.994301e-02	k: 6632	n:170000
C1orf173   170000 perm   57 sec   (2979 perm/sec)   p_kst 3.901176e-02   p_cons 1.608824e-02   p_joint 7.088235e-03

Joint ci ratio: 1.163497e-01	ci left: 5.901907e-03	ci right 6.636353e-03	k: 1127	n:180000
Cons ci ratio: 7.229234e-02	ci left: 1.549085e-02	ci right 1.665814e-02	k: 2892	n:180000
KS ci ratio: 4.580358e-02	ci left: 3.820371e-02	ci right 4.000006e-02	k: 7037	n:180000
C1orf173   180000 perm   61 sec   (2954 perm/sec)   p_kst 3.909444e-02   p_cons 1.606667e-02   p_joint 6.261111e-03

Joint ci ratio: 1.141995e-01	ci left: 5.811055e-03	ci right 6.519929e-03	k: 1170	n:190000
Cons ci ratio: 7.034925e-02	ci left: 1.551297e-02	ci right 1.664923e-02	k: 3054	n:190000
KS ci ratio: 4.463825e-02	ci left: 3.813391e-02	ci right 3.988019e-02	k: 7410	n:190000
C1orf173   190000 perm   65 sec   (2928 perm/sec)   p_kst 3.900000e-02   p_cons 1.607368e-02   p_joint 6.157895e-03

Joint ci ratio: 1.111552e-01	ci left: 5.836347e-03	ci right 6.528083e-03	k: 1235	n:200000
Cons ci ratio: 6.854404e-02	ci left: 1.553818e-02	ci right 1.664591e-02	k: 3217	n:200000
KS ci ratio: 4.351394e-02	ci left: 3.814584e-02	ci right 3.984756e-02	k: 7798	n:200000
C1orf173   200000 perm   69 sec   (2896 perm/sec)   p_kst 3.899000e-02   p_cons 1.608500e-02   p_joint 6.175000e-03

Joint ci ratio: 1.100136e-01	ci left: 5.678785e-03	ci right 6.344485e-03	k: 1261	n:210000
Cons ci ratio: 6.700206e-02	ci left: 1.550043e-02	ci right 1.657965e-02	k: 3367	n:210000
KS ci ratio: 4.254087e-02	ci left: 3.803458e-02	ci right 3.969246e-02	k: 8160	n:210000
C1orf173   210000 perm   73 sec   (2869 perm/sec)   p_kst 3.885714e-02   p_cons 1.603333e-02   p_joint 6.004762e-03

Joint ci ratio: 1.036528e-01	ci left: 6.124160e-03	ci right 6.798034e-03	k: 1420	n:220000
Cons ci ratio: 6.549348e-02	ci left: 1.549768e-02	ci right 1.655149e-02	k: 3524	n:220000
KS ci ratio: 4.154666e-02	ci left: 3.808234e-02	ci right 3.970257e-02	k: 8555	n:220000
C1orf173   220000 perm   77 sec   (2844 perm/sec)   p_kst 3.888636e-02   p_cons 1.601818e-02   p_joint 6.454545e-03

Joint ci ratio: 1.012233e-01	ci left: 6.150210e-03	ci right 6.810146e-03	k: 1489	n:230000
Cons ci ratio: 6.413554e-02	ci left: 1.546974e-02	ci right 1.649903e-02	k: 3675	n:230000
KS ci ratio: 4.061197e-02	ci left: 3.813926e-02	ci right 3.972456e-02	k: 8953	n:230000
C1orf173   230000 perm   82 sec   (2819 perm/sec)   p_kst 3.892609e-02   p_cons 1.597826e-02   p_joint 6.473913e-03

Joint ci ratio: 9.376914e-02	ci left: 6.890044e-03	ci right 7.571937e-03	k: 1734	n:240000
Cons ci ratio: 6.280037e-02	ci left: 1.547306e-02	ci right 1.648035e-02	k: 3833	n:240000
KS ci ratio: 4.146862e-02	ci left: 3.515097e-02	ci right 3.664360e-02	k: 8614	n:240000
C1orf173   240000 perm   86 sec   (2794 perm/sec)   p_kst 3.589167e-02   p_cons 1.597083e-02   p_joint 7.225000e-03

Outputting figure to mutsig2_images.part000000000022/C1orf173.17_4649_240000_0.035892_0.015971_0.007225.png
                gene_name: C1orf173
               theta_stop: 0.094 
                    nperm: 240000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.0072 
     ci_joint_bounds_left: 0.0069 
    ci_joint_bounds_right: 0.0076 

Current progress: 3 percent done.
C1orf125
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.750272e-02	ci left: 6.607862e-01	ci right 6.793147e-01	k: 6701	n:10000
KS ci ratio: 2.058215e-02	ci left: 7.757010e-01	ci right 7.919333e-01	k: 7839	n:10000
C1orf125   10000 perm   2 sec   (4939 perm/sec)   p_kst 7.839000e-01   p_cons 6.701000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000022/C1orf125.10_3139_10000_0.7839_0.6701_1.png
                gene_name: C1orf125
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
C1orf129
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.312859e-02	ci left: 3.430310e-01	ci right 3.618550e-01	k: 3524	n:10000
Cons ci ratio: 1.663040e-02	ci left: 8.403028e-01	ci right 8.544942e-01	k: 8475	n:10000
KS ci ratio: 7.961909e-02	ci left: 1.872743e-01	ci right 2.029038e-01	k: 1950	n:10000
C1orf129   10000 perm   2 sec   (5419 perm/sec)   p_kst 1.950000e-01   p_cons 8.475000e-01   p_joint 3.524000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf129.7_2796_10000_0.195_0.8475_0.3524.png
                gene_name: C1orf129
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 8 percent done.
C1orf168
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.045589e-02	ci left: 1.509016e-01	ci right 1.652982e-01	k: 1580	n:10000
Cons ci ratio: 8.606556e-02	ci left: 1.643550e-01	ci right 1.792367e-01	k: 1717	n:10000
KS ci ratio: 7.605201e-02	ci left: 2.018551e-01	ci right 2.179143e-01	k: 2098	n:10000
C1orf168   10000 perm   2 sec   (5542 perm/sec)   p_kst 2.098000e-01   p_cons 1.717000e-01   p_joint 1.580000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf168.7_2267_10000_0.2098_0.1717_0.158.png
                gene_name: C1orf168
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 11 percent done.
C1S
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.755871e-02	ci left: 6.598801e-01	ci right 6.784213e-01	k: 6692	n:10000
Cons ci ratio: 1.543566e-02	ci left: 8.589625e-01	ci right 8.724236e-01	k: 8658	n:10000
KS ci ratio: 5.672566e-02	ci left: 3.139366e-01	ci right 3.323665e-01	k: 3231	n:10000
C1S   10000 perm   2 sec   (5350 perm/sec)   p_kst 3.231000e-01   p_cons 8.658000e-01   p_joint 6.692000e-01

Outputting figure to mutsig2_images.part000000000022/C1S.6_2111_10000_0.3231_0.8658_0.6692.png
                gene_name: C1S
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 14 percent done.
C1orf101
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.473089e-02	ci left: 4.245555e-01	ci right 4.440828e-01	k: 4343	n:10000
Cons ci ratio: 2.203437e-02	ci left: 7.514032e-01	ci right 7.682452e-01	k: 7599	n:10000
KS ci ratio: 6.108332e-02	ci left: 2.827037e-01	ci right 3.006178e-01	k: 2916	n:10000
C1orf101   10000 perm   2 sec   (5339 perm/sec)   p_kst 2.916000e-01   p_cons 7.599000e-01   p_joint 4.343000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf101.6_2944_10000_0.2916_0.7599_0.4343.png
                gene_name: C1orf101
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 17 percent done.
C1orf103
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.874410e-01	ci left: 3.796147e-02	ci right 4.590818e-02	k: 418	n:10000
Cons ci ratio: 6.167987e-02	ci left: 2.787412e-01	ci right 2.965826e-01	k: 2876	n:10000
KS ci ratio: 1.827128e-01	ci left: 3.996794e-02	ci right 4.810038e-02	k: 439	n:10000
C1orf103   10000 perm   2 sec   (5537 perm/sec)   p_kst 4.390000e-02   p_cons 2.876000e-01   p_joint 4.180000e-02

Joint ci ratio: 1.187105e-01	ci left: 4.862308e-02	ci right 5.480807e-02	k: 1033	n:20000
Cons ci ratio: 4.217494e-02	ci left: 2.952436e-01	ci right 3.080141e-01	k: 6032	n:20000
KS ci ratio: 1.286660e-01	ci left: 4.148978e-02	ci right 4.724363e-02	k: 886	n:20000
C1orf103   20000 perm   4 sec   (4976 perm/sec)   p_kst 4.430000e-02   p_cons 3.016000e-01   p_joint 5.165000e-02

Joint ci ratio: 8.043108e-02	ci left: 7.040824e-02	ci right 7.634137e-02	k: 2200	n:30000
Cons ci ratio: 3.557639e-02	ci left: 2.829462e-01	ci right 2.932282e-01	k: 8642	n:30000
KS ci ratio: 1.059974e-01	ci left: 4.128440e-02	ci right 4.593784e-02	k: 1307	n:30000
C1orf103   30000 perm   6 sec   (4737 perm/sec)   p_kst 4.356667e-02   p_cons 2.880667e-01   p_joint 7.333333e-02

Joint ci ratio: 7.990644e-02	ci left: 5.447788e-02	ci right 5.903673e-02	k: 2269	n:40000
Cons ci ratio: 3.083263e-02	ci left: 2.833414e-01	ci right 2.922394e-01	k: 11511	n:40000
KS ci ratio: 9.174184e-02	ci left: 4.164399e-02	ci right 4.567260e-02	k: 1745	n:40000
C1orf103   40000 perm   9 sec   (4515 perm/sec)   p_kst 4.362500e-02   p_cons 2.877750e-01   p_joint 5.672500e-02

Outputting figure to mutsig2_images.part000000000022/C1orf103.6_2326_40000_0.043625_0.28778_0.056725.png
                gene_name: C1orf103
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.059 

Current progress: 19 percent done.
C1orf107
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.056996e-02	ci left: 2.861716e-01	ci right 3.041479e-01	k: 2951	n:10000
Cons ci ratio: 1.292744e-01	ci left: 7.873206e-02	ci right 8.971158e-02	k: 841	n:10000
KS ci ratio: 1.277098e-02	ci left: 8.981605e-01	ci right 9.098029e-01	k: 9041	n:10000
C1orf107   10000 perm   2 sec   (5642 perm/sec)   p_kst 9.041000e-01   p_cons 8.410000e-02   p_joint 2.951000e-01

Joint ci ratio: 5.088879e-02	ci left: 2.229436e-01	ci right 2.346354e-01	k: 4575	n:20000
Cons ci ratio: 8.948263e-02	ci left: 8.361907e-02	ci right 9.150132e-02	k: 1750	n:20000
KS ci ratio: 9.202354e-03	ci left: 8.965227e-01	ci right 9.048604e-01	k: 18015	n:20000
C1orf107   20000 perm   4 sec   (5081 perm/sec)   p_kst 9.007500e-01   p_cons 8.750000e-02   p_joint 2.287500e-01

Outputting figure to mutsig2_images.part000000000022/C1orf107.5_2319_20000_0.90075_0.0875_0.22875.png
                gene_name: C1orf107
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 22 percent done.
C1orf112
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.187869e-01	ci left: 9.233774e-02	ci right 1.040975e-01	k: 981	n:10000
Cons ci ratio: 1.924495e-02	ci left: 7.979081e-01	ci right 8.135134e-01	k: 8058	n:10000
KS ci ratio: 1.958891e-01	ci left: 3.471871e-02	ci right 4.235312e-02	k: 384	n:10000
C1orf112   10000 perm   2 sec   (5039 perm/sec)   p_kst 3.840000e-02   p_cons 8.058000e-01   p_joint 9.810000e-02

Joint ci ratio: 7.442799e-02	ci left: 1.172484e-01	ci right 1.263619e-01	k: 2435	n:20000
Cons ci ratio: 1.341417e-02	ci left: 8.047459e-01	ci right 8.156638e-01	k: 16205	n:20000
KS ci ratio: 1.374995e-01	ci left: 3.635916e-02	ci right 4.177590e-02	k: 780	n:20000
C1orf112   20000 perm   4 sec   (4623 perm/sec)   p_kst 3.900000e-02   p_cons 8.102500e-01   p_joint 1.217500e-01

Joint ci ratio: 6.440811e-02	ci left: 1.063492e-01	ci right 1.134599e-01	k: 3296	n:30000
Cons ci ratio: 1.101955e-02	ci left: 8.038665e-01	ci right 8.128071e-01	k: 24251	n:30000
KS ci ratio: 1.115522e-01	ci left: 3.732391e-02	ci right 4.176583e-02	k: 1185	n:30000
C1orf112   30000 perm   7 sec   (4445 perm/sec)   p_kst 3.950000e-02   p_cons 8.083667e-01   p_joint 1.098667e-01

Joint ci ratio: 5.779326e-02	ci left: 1.001610e-01	ci right 1.061467e-01	k: 4125	n:40000
Cons ci ratio: 9.557542e-03	ci left: 8.040046e-01	ci right 8.117507e-01	k: 32316	n:40000
KS ci ratio: 9.595644e-02	ci left: 3.812502e-02	ci right 4.199212e-02	k: 1601	n:40000
C1orf112   40000 perm   9 sec   (4332 perm/sec)   p_kst 4.002500e-02   p_cons 8.079000e-01   p_joint 1.031250e-01

Outputting figure to mutsig2_images.part000000000022/C1orf112.5_2650_40000_0.040025_0.8079_0.10312.png
                gene_name: C1orf112
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 25 percent done.
C1orf113
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.695188e-02	ci left: 1.336465e-01	ci right 1.473637e-01	k: 1404	n:10000
Cons ci ratio: 1.143038e-02	ci left: 9.162609e-01	ci right 9.268919e-01	k: 9217	n:10000
KS ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
C1orf113   10000 perm   2 sec   (5171 perm/sec)   p_kst 7.820000e-02   p_cons 9.217000e-01   p_joint 1.404000e-01

Joint ci ratio: 6.684975e-02	ci left: 1.417739e-01	ci right 1.516291e-01	k: 2933	n:20000
Cons ci ratio: 8.103105e-03	ci left: 9.174816e-01	ci right 9.249954e-01	k: 18426	n:20000
KS ci ratio: 9.661324e-02	ci left: 7.236421e-02	ci right 7.975961e-02	k: 1520	n:20000
C1orf113   20000 perm   4 sec   (4725 perm/sec)   p_kst 7.600000e-02   p_cons 9.213000e-01   p_joint 1.466500e-01

Outputting figure to mutsig2_images.part000000000022/C1orf113.5_2335_20000_0.076_0.9213_0.14665.png
                gene_name: C1orf113
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 28 percent done.
C1QTNF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.761150e-01	ci left: 4.303019e-02	ci right 5.143610e-02	k: 471	n:10000
Cons ci ratio: 1.071676e-01	ci left: 1.116413e-01	ci right 1.243822e-01	k: 1179	n:10000
KS ci ratio: 1.699685e-01	ci left: 4.619368e-02	ci right 5.487054e-02	k: 504	n:10000
C1QTNF1   10000 perm   2 sec   (6438 perm/sec)   p_kst 5.040000e-02   p_cons 1.179000e-01   p_joint 4.710000e-02

Joint ci ratio: 1.038504e-01	ci left: 6.303638e-02	ci right 6.999029e-02	k: 1329	n:20000
Cons ci ratio: 7.186426e-02	ci left: 1.248267e-01	ci right 1.341813e-01	k: 2589	n:20000
KS ci ratio: 1.241215e-01	ci left: 4.454455e-02	ci right 5.048789e-02	k: 949	n:20000
C1QTNF1   20000 perm   4 sec   (5713 perm/sec)   p_kst 4.745000e-02   p_cons 1.294500e-01   p_joint 6.645000e-02

Joint ci ratio: 1.027151e-01	ci left: 4.391700e-02	ci right 4.870469e-02	k: 1388	n:30000
Cons ci ratio: 5.969648e-02	ci left: 1.219026e-01	ci right 1.294368e-01	k: 3769	n:30000
KS ci ratio: 1.038171e-01	ci left: 4.300671e-02	ci right 4.774851e-02	k: 1360	n:30000
C1QTNF1   30000 perm   6 sec   (5317 perm/sec)   p_kst 4.533333e-02   p_cons 1.256333e-01   p_joint 4.626667e-02

Joint ci ratio: 8.514258e-02	ci left: 4.817833e-02	ci right 5.248725e-02	k: 2012	n:40000
Cons ci ratio: 5.157958e-02	ci left: 1.229110e-01	ci right 1.294434e-01	k: 5046	n:40000
KS ci ratio: 9.050223e-02	ci left: 4.276891e-02	ci right 4.684750e-02	k: 1791	n:40000
C1QTNF1   40000 perm   8 sec   (5202 perm/sec)   p_kst 4.477500e-02   p_cons 1.261500e-01   p_joint 5.030000e-02

Outputting figure to mutsig2_images.part000000000022/C1QTNF1.4_858_40000_0.044775_0.12615_0.0503.png
                gene_name: C1QTNF1
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.052 

Current progress: 31 percent done.
C1orf114
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.347720e-02	ci left: 5.684492e-01	ci right 5.879053e-01	k: 5782	n:10000
Cons ci ratio: 1.105432e-02	ci left: 9.211069e-01	ci right 9.314431e-01	k: 9264	n:10000
KS ci ratio: 4.934669e-02	ci left: 3.772388e-01	ci right 3.964272e-01	k: 3868	n:10000
C1orf114   10000 perm   2 sec   (5408 perm/sec)   p_kst 3.868000e-01   p_cons 9.264000e-01   p_joint 5.782000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf114.4_1547_10000_0.3868_0.9264_0.5782.png
                gene_name: C1orf114
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 33 percent done.
C1orf127
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.239222e-02	ci left: 9.033987e-01	ci right 9.147617e-01	k: 9092	n:10000
Cons ci ratio: 2.878780e-02	ci left: 6.401566e-01	ci right 6.589562e-01	k: 6496	n:10000
KS ci ratio: 1.795547e-02	ci left: 8.190349e-01	ci right 8.339744e-01	k: 8266	n:10000
C1orf127   10000 perm   2 sec   (5684 perm/sec)   p_kst 8.266000e-01   p_cons 6.496000e-01   p_joint 9.092000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf127.4_2520_10000_0.8266_0.6496_0.9092.png
                gene_name: C1orf127
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 36 percent done.
C1orf141
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.388154e-02	ci left: 7.204755e-01	ci right 7.379908e-01	k: 7293	n:10000
Cons ci ratio: 2.892703e-02	ci left: 6.379438e-01	ci right 6.567703e-01	k: 6474	n:10000
KS ci ratio: 4.054989e-02	ci left: 4.731620e-01	ci right 4.928479e-01	k: 4830	n:10000
C1orf141   10000 perm   2 sec   (6142 perm/sec)   p_kst 4.830000e-01   p_cons 6.474000e-01   p_joint 7.293000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf141.4_1227_10000_0.483_0.6474_0.7293.png
                gene_name: C1orf141
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 39 percent done.
C19orf44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.138054e-02	ci left: 2.233609e-01	ci right 2.399957e-01	k: 2316	n:10000
Cons ci ratio: 7.503512e-02	ci left: 2.062917e-01	ci right 2.224751e-01	k: 2143	n:10000
KS ci ratio: 5.504455e-02	ci left: 3.271384e-01	ci right 3.457570e-01	k: 3364	n:10000
C19orf44   10000 perm   2 sec   (5775 perm/sec)   p_kst 3.364000e-01   p_cons 2.143000e-01   p_joint 2.316000e-01

Outputting figure to mutsig2_images.part000000000022/C19orf44.3_2002_10000_0.3364_0.2143_0.2316.png
                gene_name: C19orf44
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 42 percent done.
C19orf55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.998010e-03	ci left: 9.876314e-01	ci right 9.916757e-01	k: 9898	n:10000
Cons ci ratio: 3.080975e-02	ci left: 6.084942e-01	ci right 6.276370e-01	k: 6181	n:10000
KS ci ratio: 3.854123e-02	ci left: 4.985503e-01	ci right 5.182448e-01	k: 5084	n:10000
C19orf55   10000 perm   2 sec   (6192 perm/sec)   p_kst 5.084000e-01   p_cons 6.181000e-01   p_joint 9.898000e-01

Outputting figure to mutsig2_images.part000000000022/C19orf55.3_1318_10000_0.5084_0.6181_0.9898.png
                gene_name: C19orf55
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 44 percent done.
C19orf61
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.896790e-02	ci left: 8.024758e-01	ci right 8.179431e-01	k: 8103	n:10000
KS ci ratio: 1.481906e-02	ci left: 8.683587e-01	ci right 8.814221e-01	k: 8750	n:10000
C19orf61   10000 perm   2 sec   (5955 perm/sec)   p_kst 8.750000e-01   p_cons 8.103000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000022/C19orf61.3_1615_10000_0.875_0.8103_1.png
                gene_name: C19orf61
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
C19orf75
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.666854e-02	ci left: 2.482593e-01	ci right 2.654825e-01	k: 2568	n:10000
Cons ci ratio: 1.105967e-01	ci left: 1.053948e-01	ci right 1.178325e-01	k: 1115	n:10000
KS ci ratio: 7.788726e-02	ci left: 1.941685e-01	ci right 2.100054e-01	k: 2020	n:10000
C19orf75   10000 perm   2 sec   (6618 perm/sec)   p_kst 2.020000e-01   p_cons 1.115000e-01   p_joint 2.568000e-01

Joint ci ratio: 5.602359e-02	ci left: 1.911114e-01	ci right 2.021769e-01	k: 3932	n:20000
Cons ci ratio: 7.785220e-02	ci left: 1.081032e-01	ci right 1.169098e-01	k: 2249	n:20000
KS ci ratio: 5.504969e-02	ci left: 1.966522e-01	ci right 2.078345e-01	k: 4044	n:20000
C19orf75   20000 perm   3 sec   (5813 perm/sec)   p_kst 2.022000e-01   p_cons 1.124500e-01   p_joint 1.966000e-01

Outputting figure to mutsig2_images.part000000000022/C19orf75.3_614_20000_0.2022_0.11245_0.1966.png
                gene_name: C19orf75
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 50 percent done.
C1QC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.776290e-02	ci left: 1.316879e-01	ci right 1.453234e-01	k: 1384	n:10000
Cons ci ratio: 5.369191e-02	ci left: 3.382620e-01	ci right 3.570268e-01	k: 3476	n:10000
KS ci ratio: 1.827128e-01	ci left: 3.996794e-02	ci right 4.810038e-02	k: 439	n:10000
C1QC   10000 perm   2 sec   (6643 perm/sec)   p_kst 4.390000e-02   p_cons 3.476000e-01   p_joint 1.384000e-01

Joint ci ratio: 7.777433e-02	ci left: 1.082998e-01	ci right 1.171132e-01	k: 2253	n:20000
Cons ci ratio: 3.819291e-02	ci left: 3.383600e-01	ci right 3.515851e-01	k: 6899	n:20000
KS ci ratio: 1.310813e-01	ci left: 3.998807e-02	ci right 4.564582e-02	k: 855	n:20000
C1QC   20000 perm   3 sec   (5840 perm/sec)   p_kst 4.275000e-02   p_cons 3.449500e-01   p_joint 1.126500e-01

Joint ci ratio: 7.077554e-02	ci left: 8.947396e-02	ci right 9.607182e-02	k: 2782	n:30000
Cons ci ratio: 3.119357e-02	ci left: 3.394533e-01	ci right 3.502434e-01	k: 10345	n:30000
KS ci ratio: 1.072466e-01	ci left: 4.034245e-02	ci right 4.494666e-02	k: 1278	n:30000
C1QC   30000 perm   5 sec   (5575 perm/sec)   p_kst 4.260000e-02   p_cons 3.448333e-01   p_joint 9.273333e-02

Joint ci ratio: 5.914505e-02	ci left: 9.601584e-02	ci right 1.018925e-01	k: 3957	n:40000
Cons ci ratio: 2.696318e-02	ci left: 3.410381e-01	ci right 3.503843e-01	k: 13828	n:40000
KS ci ratio: 9.491206e-02	ci left: 3.895552e-02	ci right 4.286148e-02	k: 1635	n:40000
C1QC   40000 perm   7 sec   (5398 perm/sec)   p_kst 4.087500e-02   p_cons 3.457000e-01   p_joint 9.892500e-02

Outputting figure to mutsig2_images.part000000000022/C1QC.3_746_40000_0.040875_0.3457_0.098925.png
                gene_name: C1QC
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 53 percent done.
C1R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.134967e-02	ci left: 1.483504e-01	ci right 1.626509e-01	k: 1554	n:10000
Cons ci ratio: 1.938045e-01	ci left: 3.548103e-02	ci right 4.319029e-02	k: 392	n:10000
KS ci ratio: 2.605868e-02	ci left: 6.843584e-01	ci right 7.025288e-01	k: 6935	n:10000
C1R   10000 perm   2 sec   (6034 perm/sec)   p_kst 6.935000e-01   p_cons 3.920000e-02   p_joint 1.554000e-01

Joint ci ratio: 8.723533e-02	ci left: 8.768580e-02	ci right 9.573336e-02	k: 1833	n:20000
Cons ci ratio: 1.449005e-01	ci left: 3.273699e-02	ci right 3.789925e-02	k: 705	n:20000
KS ci ratio: 1.855911e-02	ci left: 6.839905e-01	ci right 6.968541e-01	k: 13809	n:20000
C1R   20000 perm   4 sec   (5378 perm/sec)   p_kst 6.904500e-01   p_cons 3.525000e-02   p_joint 9.165000e-02

Joint ci ratio: 6.142315e-02	ci left: 1.158497e-01	ci right 1.232241e-01	k: 3585	n:30000
Cons ci ratio: 1.182538e-01	ci left: 3.324024e-02	ci right 3.745037e-02	k: 1059	n:30000
KS ci ratio: 1.525708e-02	ci left: 6.822538e-01	ci right 6.927765e-01	k: 20626	n:30000
C1R   30000 perm   6 sec   (5136 perm/sec)   p_kst 6.875333e-01   p_cons 3.530000e-02   p_joint 1.195000e-01

Joint ci ratio: 5.411307e-02	ci left: 1.128279e-01	ci right 1.191280e-01	k: 4638	n:40000
Cons ci ratio: 9.824692e-02	ci left: 3.639149e-02	ci right 4.017592e-02	k: 1530	n:40000
KS ci ratio: 1.318721e-02	ci left: 6.838101e-01	ci right 6.929126e-01	k: 27535	n:40000
C1R   40000 perm   8 sec   (4958 perm/sec)   p_kst 6.883750e-01   p_cons 3.825000e-02   p_joint 1.159500e-01

Outputting figure to mutsig2_images.part000000000022/C1R.3_1844_40000_0.68837_0.03825_0.11595.png
                gene_name: C1R
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 56 percent done.
C1RL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.052552e-01	ci left: 1.153530e-01	ci right 1.282683e-01	k: 1217	n:10000
Cons ci ratio: 4.111420e-02	ci left: 4.662695e-01	ci right 4.859444e-01	k: 4761	n:10000
KS ci ratio: 1.390683e-01	ci left: 6.846013e-02	ci right 7.878990e-02	k: 735	n:10000
C1RL   10000 perm   2 sec   (6198 perm/sec)   p_kst 7.350000e-02   p_cons 4.761000e-01   p_joint 1.217000e-01

Joint ci ratio: 5.361592e-02	ci left: 2.052141e-01	ci right 2.165701e-01	k: 4217	n:20000
Cons ci ratio: 2.890888e-02	ci left: 4.720051e-01	ci right 4.859010e-01	k: 9579	n:20000
KS ci ratio: 9.702811e-02	ci left: 7.177763e-02	ci right 7.914636e-02	k: 1508	n:20000
C1RL   20000 perm   4 sec   (5505 perm/sec)   p_kst 7.540000e-02   p_cons 4.789500e-01   p_joint 2.108500e-01

Outputting figure to mutsig2_images.part000000000022/C1RL.3_1488_20000_0.0754_0.47895_0.21085.png
                gene_name: C1RL
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 58 percent done.
C1orf124
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.698613e-02	ci left: 4.006365e-01	ci right 4.200158e-01	k: 4103	n:10000
KS ci ratio: 8.847932e-03	ci left: 9.472103e-01	ci right 9.557242e-01	k: 9516	n:10000
C1orf124   10000 perm   2 sec   (6099 perm/sec)   p_kst 9.516000e-01   p_cons 4.103000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000022/C1orf124.3_1525_10000_0.9516_0.4103_1.png
                gene_name: C1orf124
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
C19orf43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.234410e-01	ci left: 8.591861e-02	ci right 9.732058e-02	k: 915	n:10000
Cons ci ratio: 1.925331e-01	ci left: 3.595770e-02	ci right 4.371330e-02	k: 397	n:10000
KS ci ratio: 3.618281e-01	ci left: 9.503508e-03	ci right 1.378807e-02	k: 115	n:10000
C19orf43   10000 perm   1 sec   (7347 perm/sec)   p_kst 1.150000e-02   p_cons 3.970000e-02   p_joint 9.150000e-02

Joint ci ratio: 7.761917e-02	ci left: 1.086930e-01	ci right 1.175199e-01	k: 2261	n:20000
Cons ci ratio: 1.337986e-01	ci left: 3.839058e-02	ci right 4.394383e-02	k: 822	n:20000
KS ci ratio: 2.575473e-01	ci left: 9.975082e-03	ci right 1.296948e-02	k: 228	n:20000
C19orf43   20000 perm   3 sec   (6456 perm/sec)   p_kst 1.140000e-02   p_cons 4.110000e-02   p_joint 1.130500e-01

Joint ci ratio: 1.589639e-01	ci left: 1.828556e-02	ci right 2.147505e-02	k: 595	n:30000
Cons ci ratio: 1.085836e-01	ci left: 3.936835e-02	ci right 4.392096e-02	k: 1248	n:30000
KS ci ratio: 2.110666e-01	ci left: 1.016635e-02	ci right 1.259633e-02	k: 340	n:30000
C19orf43   30000 perm   5 sec   (6121 perm/sec)   p_kst 1.133333e-02   p_cons 4.160000e-02   p_joint 1.983333e-02

Joint ci ratio: 1.384395e-01	ci left: 1.828815e-02	ci right 2.103221e-02	k: 785	n:40000
Cons ci ratio: 9.434231e-02	ci left: 3.941973e-02	ci right 4.334720e-02	k: 1654	n:40000
KS ci ratio: 1.845774e-01	ci left: 1.012024e-02	ci right 1.220164e-02	k: 445	n:40000
C19orf43   40000 perm   7 sec   (5883 perm/sec)   p_kst 1.112500e-02   p_cons 4.135000e-02   p_joint 1.962500e-02

Joint ci ratio: 1.113663e-01	ci left: 2.283182e-02	ci right 2.554381e-02	k: 1208	n:50000
Cons ci ratio: 8.469798e-02	ci left: 3.933741e-02	ci right 4.283612e-02	k: 2053	n:50000
KS ci ratio: 1.628177e-01	ci left: 1.052632e-02	ci right 1.241104e-02	k: 572	n:50000
C19orf43   50000 perm   9 sec   (5701 perm/sec)   p_kst 1.144000e-02   p_cons 4.106000e-02   p_joint 2.416000e-02

Joint ci ratio: 1.042242e-01	ci left: 2.183157e-02	ci right 2.424820e-02	k: 1381	n:60000
Cons ci ratio: 7.721722e-02	ci left: 3.959085e-02	ci right 4.278705e-02	k: 2470	n:60000
KS ci ratio: 1.482614e-01	ci left: 1.066224e-02	ci right 1.238550e-02	k: 690	n:60000
C19orf43   60000 perm   11 sec   (5556 perm/sec)   p_kst 1.150000e-02   p_cons 4.116667e-02   p_joint 2.301667e-02

Joint ci ratio: 9.368608e-02	ci left: 2.325569e-02	ci right 2.555540e-02	k: 1707	n:70000
Cons ci ratio: 7.140971e-02	ci left: 3.979571e-02	ci right 4.275675e-02	k: 2888	n:70000
KS ci ratio: 1.374506e-01	ci left: 1.069572e-02	ci right 1.228802e-02	k: 803	n:70000
C19orf43   70000 perm   13 sec   (5326 perm/sec)   p_kst 1.147143e-02   p_cons 4.125714e-02   p_joint 2.438571e-02

Joint ci ratio: 1.555594e-01	ci left: 7.262125e-03	ci right 8.498964e-03	k: 629	n:80000
Cons ci ratio: 7.493505e-02	ci left: 3.183421e-02	ci right 3.432480e-02	k: 2645	n:80000
KS ci ratio: 1.286340e-01	ci left: 1.073638e-02	ci right 1.222437e-02	k: 917	n:80000
C19orf43   80000 perm   15 sec   (5216 perm/sec)   p_kst 1.146250e-02   p_cons 3.306250e-02   p_joint 7.862500e-03

Joint ci ratio: 1.461184e-01	ci left: 7.353378e-03	ci right 8.523116e-03	k: 713	n:90000
Cons ci ratio: 7.070786e-02	ci left: 3.185337e-02	ci right 3.419908e-02	k: 2971	n:90000
KS ci ratio: 1.211440e-01	ci left: 1.080288e-02	ci right 1.220665e-02	k: 1034	n:90000
C19orf43   90000 perm   18 sec   (5119 perm/sec)   p_kst 1.148889e-02   p_cons 3.301111e-02   p_joint 7.922222e-03

Joint ci ratio: 1.376902e-01	ci left: 7.486141e-03	ci right 8.602677e-03	k: 803	n:100000
Cons ci ratio: 6.712379e-02	ci left: 3.187187e-02	ci right 3.409533e-02	k: 3297	n:100000
KS ci ratio: 1.148768e-01	ci left: 1.084837e-02	ci right 1.218019e-02	k: 1150	n:100000
C19orf43   100000 perm   20 sec   (5027 perm/sec)   p_kst 1.150000e-02   p_cons 3.297000e-02   p_joint 8.030000e-03

Joint ci ratio: 1.306437e-01	ci left: 7.587554e-03	ci right 8.656806e-03	k: 892	n:110000
Cons ci ratio: 6.387089e-02	ci left: 3.205058e-02	ci right 3.417413e-02	k: 3641	n:110000
KS ci ratio: 1.098428e-01	ci left: 1.081638e-02	ci right 1.208230e-02	k: 1258	n:110000
C19orf43   110000 perm   23 sec   (4878 perm/sec)   p_kst 1.143636e-02   p_cons 3.310000e-02   p_joint 8.109091e-03

Joint ci ratio: 1.250289e-01	ci left: 7.616751e-03	ci right 8.640567e-03	k: 974	n:120000
Cons ci ratio: 6.112066e-02	ci left: 3.212778e-02	ci right 3.416153e-02	k: 3976	n:120000
KS ci ratio: 1.047222e-01	ci left: 1.093688e-02	ci right 1.215356e-02	k: 1384	n:120000
C19orf43   120000 perm   25 sec   (4790 perm/sec)   p_kst 1.153333e-02   p_cons 3.313333e-02   p_joint 8.116667e-03

Joint ci ratio: 1.142328e-01	ci left: 8.463856e-03	ci right 9.496686e-03	k: 1166	n:130000
Cons ci ratio: 5.869760e-02	ci left: 3.219476e-02	ci right 3.414921e-02	k: 4311	n:130000
KS ci ratio: 1.011408e-01	ci left: 1.084499e-02	ci right 1.200773e-02	k: 1484	n:130000
C19orf43   130000 perm   28 sec   (4705 perm/sec)   p_kst 1.141538e-02   p_cons 3.316154e-02   p_joint 8.969231e-03

Joint ci ratio: 1.106910e-01	ci left: 8.386864e-03	ci right 9.376495e-03	k: 1242	n:140000
Cons ci ratio: 5.657310e-02	ci left: 3.221832e-02	ci right 3.410108e-02	k: 4641	n:140000
KS ci ratio: 9.722314e-02	ci left: 1.092018e-02	ci right 1.204305e-02	k: 1606	n:140000
C19orf43   140000 perm   30 sec   (4625 perm/sec)   p_kst 1.147143e-02   p_cons 3.315000e-02   p_joint 8.871429e-03

Joint ci ratio: 1.069290e-01	ci left: 8.404931e-03	ci right 9.360865e-03	k: 1331	n:150000
Cons ci ratio: 5.458998e-02	ci left: 3.232536e-02	ci right 3.414607e-02	k: 4984	n:150000
KS ci ratio: 9.367327e-02	ci left: 1.099913e-02	ci right 1.208655e-02	k: 1730	n:150000
C19orf43   150000 perm   33 sec   (4547 perm/sec)   p_kst 1.153333e-02   p_cons 3.322667e-02   p_joint 8.873333e-03

Joint ci ratio: 1.036736e-01	ci left: 8.396880e-03	ci right 9.321049e-03	k: 1416	n:160000
Cons ci ratio: 5.274548e-02	ci left: 3.248791e-02	ci right 3.425406e-02	k: 5338	n:160000
KS ci ratio: 9.088320e-02	ci left: 1.097110e-02	ci right 1.202172e-02	k: 1838	n:160000
C19orf43   160000 perm   36 sec   (4471 perm/sec)   p_kst 1.148750e-02   p_cons 3.336250e-02   p_joint 8.850000e-03

Joint ci ratio: 1.004961e-01	ci left: 8.424579e-03	ci right 9.321702e-03	k: 1507	n:170000
Cons ci ratio: 5.118786e-02	ci left: 3.249280e-02	ci right 3.420551e-02	k: 5668	n:170000
KS ci ratio: 8.858191e-02	ci left: 1.088350e-02	ci right 1.189797e-02	k: 1935	n:170000
C19orf43   170000 perm   39 sec   (4399 perm/sec)   p_kst 1.138235e-02   p_cons 3.334118e-02   p_joint 8.864706e-03

Joint ci ratio: 9.695366e-02	ci left: 8.563437e-03	ci right 9.441375e-03	k: 1619	n:180000
Cons ci ratio: 4.963657e-02	ci left: 3.265702e-02	ci right 3.432472e-02	k: 6027	n:180000
KS ci ratio: 8.599883e-02	ci left: 1.092011e-02	ci right 1.190683e-02	k: 2053	n:180000
C19orf43   180000 perm   42 sec   (4329 perm/sec)   p_kst 1.140556e-02   p_cons 3.348333e-02   p_joint 8.994444e-03

Outputting figure to mutsig2_images.part000000000022/C19orf43.2_543_180000_0.011406_0.033483_0.0089944.png
                gene_name: C19orf43
               theta_stop: 0.097 
                    nperm: 180000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.0090 
     ci_joint_bounds_left: 0.0086 
    ci_joint_bounds_right: 0.0094 

Current progress: 64 percent done.
C19orf62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.118833e-02	ci left: 7.655723e-01	ci right 7.820679e-01	k: 7739	n:10000
Cons ci ratio: 2.442025e-02	ci left: 7.114903e-01	ci right 7.291812e-01	k: 7204	n:10000
KS ci ratio: 5.519279e-02	ci left: 3.259469e-01	ci right 3.445492e-01	k: 3352	n:10000
C19orf62   10000 perm   2 sec   (6643 perm/sec)   p_kst 3.352000e-01   p_cons 7.204000e-01   p_joint 7.739000e-01

Outputting figure to mutsig2_images.part000000000022/C19orf62.2_1022_10000_0.3352_0.7204_0.7739.png
                gene_name: C19orf62
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 67 percent done.
C1GALT1C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
Cons ci ratio: 3.512569e-01	ci left: 1.014137e-02	ci right 1.454954e-02	k: 122	n:10000
KS ci ratio: 1.736385e-02	ci left: 8.285951e-01	ci right 8.432086e-01	k: 8360	n:10000
C1GALT1C1   10000 perm   1 sec   (6925 perm/sec)   p_kst 8.360000e-01   p_cons 1.220000e-02   p_joint 1.090000e-02

Joint ci ratio: 2.592707e-01	ci left: 9.834707e-03	ci right 1.280992e-02	k: 225	n:20000
Cons ci ratio: 2.448786e-01	ci left: 1.110033e-02	ci right 1.424373e-02	k: 252	n:20000
KS ci ratio: 1.236470e-02	ci left: 8.288205e-01	ci right 8.391822e-01	k: 16681	n:20000
C1GALT1C1   20000 perm   3 sec   (6069 perm/sec)   p_kst 8.340500e-01   p_cons 1.260000e-02   p_joint 1.125000e-02

Joint ci ratio: 1.790047e-01	ci left: 1.432368e-02	ci right 1.717122e-02	k: 471	n:30000
Cons ci ratio: 1.951809e-01	ci left: 1.197088e-02	ci right 1.459130e-02	k: 397	n:30000
KS ci ratio: 1.009376e-02	ci left: 8.298416e-01	ci right 8.382936e-01	k: 25023	n:30000
C1GALT1C1   30000 perm   5 sec   (5764 perm/sec)   p_kst 8.341000e-01   p_cons 1.323333e-02   p_joint 1.570000e-02

Joint ci ratio: 1.669198e-01	ci left: 1.246390e-02	ci right 1.475752e-02	k: 543	n:40000
Cons ci ratio: 1.681779e-01	ci left: 1.227219e-02	ci right 1.454927e-02	k: 535	n:40000
KS ci ratio: 8.763480e-03	ci left: 8.297117e-01	ci right 8.370398e-01	k: 33336	n:40000
C1GALT1C1   40000 perm   7 sec   (5573 perm/sec)   p_kst 8.334000e-01   p_cons 1.337500e-02   p_joint 1.357500e-02

Joint ci ratio: 1.490759e-01	ci left: 1.262236e-02	ci right 1.467468e-02	k: 681	n:50000
Cons ci ratio: 1.506513e-01	ci left: 1.235273e-02	ci right 1.438435e-02	k: 667	n:50000
KS ci ratio: 7.845032e-03	ci left: 8.298627e-01	ci right 8.364186e-01	k: 41658	n:50000
C1GALT1C1   50000 perm   9 sec   (5416 perm/sec)   p_kst 8.331600e-01   p_cons 1.334000e-02   p_joint 1.362000e-02

Joint ci ratio: 1.366299e-01	ci left: 1.260796e-02	ci right 1.447286e-02	k: 811	n:60000
Cons ci ratio: 1.382792e-01	ci left: 1.230205e-02	ci right 1.414548e-02	k: 792	n:60000
KS ci ratio: 7.160880e-03	ci left: 8.301758e-01	ci right 8.361586e-01	k: 49991	n:60000
C1GALT1C1   60000 perm   11 sec   (5280 perm/sec)   p_kst 8.331833e-01   p_cons 1.320000e-02   p_joint 1.351667e-02

Joint ci ratio: 1.267891e-01	ci left: 1.261665e-02	ci right 1.433831e-02	k: 942	n:70000
Cons ci ratio: 1.283856e-01	ci left: 1.229844e-02	ci right 1.399941e-02	k: 919	n:70000
KS ci ratio: 6.623482e-03	ci left: 8.306618e-01	ci right 8.361962e-01	k: 58341	n:70000
C1GALT1C1   70000 perm   14 sec   (5120 perm/sec)   p_kst 8.334429e-01   p_cons 1.312857e-02   p_joint 1.345714e-02

Joint ci ratio: 1.083858e-01	ci left: 1.521485e-02	ci right 1.697050e-02	k: 1286	n:80000
Cons ci ratio: 1.200608e-01	ci left: 1.235992e-02	ci right 1.395067e-02	k: 1051	n:80000
KS ci ratio: 6.208079e-03	ci left: 8.302840e-01	ci right 8.354669e-01	k: 66631	n:80000
C1GALT1C1   80000 perm   16 sec   (5010 perm/sec)   p_kst 8.328875e-01   p_cons 1.313750e-02   p_joint 1.607500e-02

Joint ci ratio: 9.916312e-02	ci left: 1.621968e-02	ci right 1.792276e-02	k: 1535	n:90000
Cons ci ratio: 1.135596e-01	ci left: 1.232412e-02	ci right 1.381862e-02	k: 1175	n:90000
KS ci ratio: 5.864906e-03	ci left: 8.298653e-01	ci right 8.347577e-01	k: 74909	n:90000
C1GALT1C1   90000 perm   18 sec   (4918 perm/sec)   p_kst 8.323222e-01   p_cons 1.305556e-02   p_joint 1.705556e-02

Joint ci ratio: 9.443159e-02	ci left: 1.613944e-02	ci right 1.774875e-02	k: 1693	n:100000
Cons ci ratio: 1.075932e-01	ci left: 1.239469e-02	ci right 1.381376e-02	k: 1309	n:100000
KS ci ratio: 5.564177e-03	ci left: 8.299799e-01	ci right 8.346208e-01	k: 83231	n:100000
C1GALT1C1   100000 perm   21 sec   (4835 perm/sec)   p_kst 8.323100e-01   p_cons 1.309000e-02   p_joint 1.693000e-02

Joint ci ratio: 9.039297e-02	ci left: 1.604871e-02	ci right 1.757691e-02	k: 1848	n:110000
Cons ci ratio: 1.030582e-01	ci left: 1.231234e-02	ci right 1.365897e-02	k: 1427	n:110000
KS ci ratio: 5.302310e-03	ci left: 8.302434e-01	ci right 8.346663e-01	k: 91571	n:110000
C1GALT1C1   110000 perm   23 sec   (4729 perm/sec)   p_kst 8.324636e-01   p_cons 1.297273e-02   p_joint 1.680000e-02

Joint ci ratio: 8.665600e-02	ci left: 1.603958e-02	ci right 1.750057e-02	k: 2011	n:120000
Cons ci ratio: 9.885797e-02	ci left: 1.229356e-02	ci right 1.358014e-02	k: 1551	n:120000
KS ci ratio: 5.085917e-03	ci left: 8.298223e-01	ci right 8.340617e-01	k: 99834	n:120000
C1GALT1C1   120000 perm   26 sec   (4637 perm/sec)   p_kst 8.319500e-01   p_cons 1.292500e-02   p_joint 1.675833e-02

Outputting figure to mutsig2_images.part000000000022/C1GALT1C1.2_961_120000_0.83195_0.012925_0.016758.png
                gene_name: C1GALT1C1
               theta_stop: 0.099 
                    nperm: 120000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.018 

Current progress: 69 percent done.
C1QTNF9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.246706e-02	ci left: 9.023712e-01	ci right 9.137898e-01	k: 9082	n:10000
KS ci ratio: 1.545556e-02	ci left: 8.586563e-01	ci right 8.721300e-01	k: 8655	n:10000
C1QTNF9B   10000 perm   1 sec   (6974 perm/sec)   p_kst 8.655000e-01   p_cons 9.082000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000022/C1QTNF9B.2_1014_10000_0.8655_0.9082_1.png
                gene_name: C1QTNF9B
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
C1orf100
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.268081e-02	ci left: 5.801849e-01	ci right 5.995628e-01	k: 5899	n:10000
KS ci ratio: 2.959539e-02	ci left: 6.273859e-01	ci right 6.463343e-01	k: 6369	n:10000
C1orf100   10000 perm   1 sec   (6879 perm/sec)   p_kst 6.369000e-01   p_cons 5.899000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000022/C1orf100.2_460_10000_0.6369_0.5899_1.png
                gene_name: C1orf100
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
C1orf104
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.248709e-02	ci left: 2.734923e-01	ci right 2.912347e-01	k: 2823	n:10000
Cons ci ratio: 4.818124e-02	ci left: 3.885863e-01	ci right 4.078731e-01	k: 3982	n:10000
KS ci ratio: 1.743772e-01	ci left: 4.389243e-02	ci right 5.237330e-02	k: 480	n:10000
C1orf104   10000 perm   1 sec   (6987 perm/sec)   p_kst 4.800000e-02   p_cons 3.982000e-01   p_joint 2.823000e-01

Joint ci ratio: 7.860206e-02	ci left: 1.062360e-01	ci right 1.149776e-01	k: 2211	n:20000
Cons ci ratio: 3.422587e-02	ci left: 3.892624e-01	ci right 4.028678e-01	k: 7921	n:20000
KS ci ratio: 1.193201e-01	ci left: 4.813723e-02	ci right 5.429407e-02	k: 1023	n:20000
C1orf104   20000 perm   3 sec   (6166 perm/sec)   p_kst 5.115000e-02   p_cons 3.960500e-01   p_joint 1.105500e-01

Joint ci ratio: 6.519952e-02	ci left: 1.040164e-01	ci right 1.110598e-01	k: 3225	n:30000
Cons ci ratio: 2.793161e-02	ci left: 3.907587e-01	ci right 4.018614e-01	k: 11889	n:30000
KS ci ratio: 9.653424e-02	ci left: 4.957953e-02	ci right 5.464099e-02	k: 1562	n:30000
C1orf104   30000 perm   5 sec   (5864 perm/sec)   p_kst 5.206667e-02   p_cons 3.963000e-01   p_joint 1.075000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf104.2_715_30000_0.052067_0.3963_0.1075.png
                gene_name: C1orf104
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 78 percent done.
C1orf116
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.863244e-03	ci left: 9.574375e-01	ci right 9.650907e-01	k: 9614	n:10000
KS ci ratio: 4.467632e-02	ci left: 4.251537e-01	ci right 4.446842e-01	k: 4349	n:10000
C1orf116   10000 perm   2 sec   (5860 perm/sec)   p_kst 4.349000e-01   p_cons 9.614000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000022/C1orf116.2_1818_10000_0.4349_0.9614_1.png
                gene_name: C1orf116
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
C1orf128
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.761157e-02	ci left: 5.107537e-01	ci right 5.304343e-01	k: 5206	n:10000
Cons ci ratio: 2.560606e-02	ci left: 6.918185e-01	ci right 7.098644e-01	k: 7009	n:10000
KS ci ratio: 6.439016e-02	ci left: 2.616134e-01	ci right 2.791206e-01	k: 2703	n:10000
C1orf128   10000 perm   1 sec   (6850 perm/sec)   p_kst 2.703000e-01   p_cons 7.009000e-01   p_joint 5.206000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf128.2_660_10000_0.2703_0.7009_0.5206.png
                gene_name: C1orf128
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 83 percent done.
C1orf130
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.293718e-02	ci left: 2.706208e-01	ci right 2.883078e-01	k: 2794	n:10000
Cons ci ratio: 8.814885e-02	ci left: 1.577733e-01	ci right 1.724223e-01	k: 1650	n:10000
KS ci ratio: 8.564455e-02	ci left: 1.657308e-01	ci right 1.806601e-01	k: 1731	n:10000
C1orf130   10000 perm   1 sec   (7128 perm/sec)   p_kst 1.731000e-01   p_cons 1.650000e-01   p_joint 2.794000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf130.2_321_10000_0.1731_0.165_0.2794.png
                gene_name: C1orf130
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 86 percent done.
C1orf131
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.481309e-02	ci left: 2.072778e-01	ci right 2.234884e-01	k: 2153	n:10000
Cons ci ratio: 3.361463e-02	ci left: 5.664436e-01	ci right 5.859120e-01	k: 5762	n:10000
KS ci ratio: 8.213870e-02	ci left: 1.778256e-01	ci right 1.931581e-01	k: 1854	n:10000
C1orf131   10000 perm   1 sec   (6865 perm/sec)   p_kst 1.854000e-01   p_cons 5.762000e-01   p_joint 2.153000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf131.2_910_10000_0.1854_0.5762_0.2153.png
                gene_name: C1orf131
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 89 percent done.
C1orf135
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.214176e-02	ci left: 4.539876e-01	ci right 4.736335e-01	k: 4638	n:10000
Cons ci ratio: 1.927568e-02	ci left: 7.974007e-01	ci right 8.130211e-01	k: 8053	n:10000
KS ci ratio: 1.283610e-01	ci left: 7.979957e-02	ci right 9.084340e-02	k: 852	n:10000
C1orf135   10000 perm   2 sec   (6543 perm/sec)   p_kst 8.520000e-02   p_cons 8.053000e-01   p_joint 4.638000e-01

Joint ci ratio: 1.907971e-02	ci left: 6.719765e-01	ci right 6.849716e-01	k: 13570	n:20000
Cons ci ratio: 1.375989e-02	ci left: 7.967117e-01	ci right 8.078003e-01	k: 16046	n:20000
KS ci ratio: 9.311361e-02	ci left: 7.759738e-02	ci right 8.522484e-02	k: 1627	n:20000
C1orf135   20000 perm   3 sec   (5917 perm/sec)   p_kst 8.135000e-02   p_cons 8.023000e-01   p_joint 6.785000e-01

Outputting figure to mutsig2_images.part000000000022/C1orf135.2_1086_20000_0.08135_0.8023_0.6785.png
                gene_name: C1orf135
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 92 percent done.
C1orf14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.163074e-01	ci left: 9.603734e-02	ci right 1.079956e-01	k: 1019	n:10000
Cons ci ratio: 7.879218e-02	ci left: 1.905240e-01	ci right 2.062521e-01	k: 1983	n:10000
KS ci ratio: 2.638133e-01	ci left: 1.874721e-02	ci right 2.453613e-02	k: 215	n:10000
C1orf14   10000 perm   2 sec   (6039 perm/sec)   p_kst 2.150000e-02   p_cons 1.983000e-01   p_joint 1.019000e-01

Joint ci ratio: 9.355220e-02	ci left: 7.691238e-02	ci right 8.451004e-02	k: 1613	n:20000
Cons ci ratio: 5.580292e-02	ci left: 1.923481e-01	ci right 2.034399e-01	k: 3957	n:20000
KS ci ratio: 1.841662e-01	ci left: 2.010730e-02	ci right 2.423325e-02	k: 442	n:20000
C1orf14   20000 perm   4 sec   (5349 perm/sec)   p_kst 2.210000e-02   p_cons 1.978500e-01   p_joint 8.065000e-02

Joint ci ratio: 1.205723e-01	ci left: 3.197780e-02	ci right 3.611308e-02	k: 1020	n:30000
Cons ci ratio: 4.838697e-02	ci left: 1.751388e-01	ci right 1.838567e-01	k: 5384	n:30000
KS ci ratio: 1.520778e-01	ci left: 2.001685e-02	ci right 2.334335e-02	k: 649	n:30000
C1orf14   30000 perm   6 sec   (5102 perm/sec)   p_kst 2.163333e-02   p_cons 1.794667e-01   p_joint 3.400000e-02

Joint ci ratio: 1.092171e-01	ci left: 2.949349e-02	ci right 3.292501e-02	k: 1247	n:40000
Cons ci ratio: 4.197571e-02	ci left: 1.752293e-01	ci right 1.827673e-01	k: 7159	n:40000
KS ci ratio: 1.297037e-01	ci left: 2.087524e-02	ci right 2.379468e-02	k: 892	n:40000
C1orf14   40000 perm   8 sec   (4937 perm/sec)   p_kst 2.230000e-02   p_cons 1.789750e-01   p_joint 3.117500e-02

Joint ci ratio: 9.843855e-02	ci left: 2.922478e-02	ci right 3.227002e-02	k: 1536	n:50000
Cons ci ratio: 3.751619e-02	ci left: 1.758471e-01	ci right 1.825902e-01	k: 8960	n:50000
KS ci ratio: 1.178183e-01	ci left: 2.038244e-02	ci right 2.295351e-02	k: 1082	n:50000
C1orf14   50000 perm   10 sec   (4803 perm/sec)   p_kst 2.164000e-02   p_cons 1.792000e-01   p_joint 3.072000e-02

Joint ci ratio: 8.837490e-02	ci left: 3.034511e-02	ci right 3.316709e-02	k: 1904	n:60000
Cons ci ratio: 3.436668e-02	ci left: 1.751287e-01	ci right 1.812691e-01	k: 10691	n:60000
KS ci ratio: 1.075784e-01	ci left: 2.048410e-02	ci right 2.282916e-02	k: 1298	n:60000
C1orf14   60000 perm   13 sec   (4663 perm/sec)   p_kst 2.163333e-02   p_cons 1.781833e-01   p_joint 3.173333e-02

Joint ci ratio: 7.827853e-02	ci left: 3.323023e-02	ci right 3.595138e-02	k: 2420	n:70000
Cons ci ratio: 3.185624e-02	ci left: 1.750023e-01	ci right 1.806816e-01	k: 12448	n:70000
KS ci ratio: 9.938075e-02	ci left: 2.066124e-02	ci right 2.283580e-02	k: 1521	n:70000
C1orf14   70000 perm   15 sec   (4527 perm/sec)   p_kst 2.172857e-02   p_cons 1.778286e-01   p_joint 3.457143e-02

Outputting figure to mutsig2_images.part000000000022/C1orf14.2_2002_70000_0.021729_0.17783_0.034571.png
                gene_name: C1orf14
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 94 percent done.
C1orf150
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.890802e-02	ci left: 6.382456e-01	ci right 6.570684e-01	k: 6477	n:10000
KS ci ratio: 4.618013e-02	ci left: 4.090055e-01	ci right 4.284419e-01	k: 4187	n:10000
C1orf150   10000 perm   1 sec   (6912 perm/sec)   p_kst 4.187000e-01   p_cons 6.477000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000022/C1orf150.2_428_10000_0.4187_0.6477_1.png
                gene_name: C1orf150
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
C1orf156
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.415312e-02	ci left: 4.309378e-01	ci right 4.504967e-01	k: 4407	n:10000
Cons ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
KS ci ratio: 5.515566e-02	ci left: 3.262447e-01	ci right 3.448511e-01	k: 3355	n:10000
C1orf156   10000 perm   1 sec   (6812 perm/sec)   p_kst 3.355000e-01   p_cons 7.170000e-02   p_joint 4.407000e-01

Joint ci ratio: 4.496097e-02	ci left: 2.691673e-01	ci right 2.815981e-01	k: 5507	n:20000
Cons ci ratio: 9.851894e-02	ci left: 6.972516e-02	ci right 7.699946e-02	k: 1466	n:20000
KS ci ratio: 3.885708e-02	ci left: 3.306471e-01	ci right 3.438002e-01	k: 6744	n:20000
C1orf156   20000 perm   3 sec   (5958 perm/sec)   p_kst 3.372000e-01   p_cons 7.330000e-02   p_joint 2.753500e-01

Outputting figure to mutsig2_images.part000000000022/C1orf156.2_1123_20000_0.3372_0.0733_0.27535.png
                gene_name: C1orf156
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000022
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 22 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 9893854: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000023> was used as the working directory.
Started at Fri Oct  5 23:56:34 2012
Results reported at Sat Oct  6 00:03:07 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000023.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000023.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 23  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000023.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    379.13 sec.
    Max Memory :      3598 MB
    Max Swap   :      5967 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
23
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 23
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 23: processing genes 1984 - 2073
Calculating significance of each gene.
Using projection method.
1984	C1orf175	9.997154e-01
1985	C1orf177	2.795280e-01
1986	C1orf182	1
1987	C1orf183	3.171668e-01
1988	C1orf186	4.847884e-01
1989	C1orf187	6.299791e-01
1990	C1orf189	1.256158e-02
1991	C1orf190	7.893543e-01
1992	C1orf192	1.902956e-01
1993	C1orf194	2.337080e-01
1994	C1orf198	3.048875e-01
1995	C1orf201	6.701208e-01
1996	C1orf21	1
1997	C1orf210	1
1998	C1orf213	1
1999	C1orf216	1
2000/18030 2000	C1orf226	2.586377e-01
2001	C1orf227	3.346178e-01
2002	C1orf25	6.184591e-01
2003	C1orf26	7.579396e-02
2004	C1orf27	3.176574e-01
2005	C1orf31	1
In gene C1orf35 the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 702     n = 1	mu =   4.60e-07
2006	C1orf35	4.381261e-01
2007	C1orf38	1.801263e-01
2008	C1orf43	1.597303e-01
2009	C1orf49	1.185773e-01
2010	C1orf50	4.643855e-02
2011	C1orf51	7.441616e-01
2012	C1orf52	1.266372e-01
2013	C1orf53	1
2014	C1orf54	1
2015	C1orf55	8.162831e-01
2016	C1orf56	1
2017	C1orf57	1.450926e-01
2018	C1orf58	4.645291e-01
2019	C1orf59	7.476141e-01
2020	C1orf61	1.559387e-01
2021	C1orf63	1
2022	C1orf64	1
2023	C1orf65	8.577632e-01
2024	C1orf66	3.365077e-01
2025	C1orf69	6.186343e-01
2026	C1orf74	3.826366e-01
2027	C1orf77	1.691866e-01
2028	C1orf83	1
2029	C1orf84	1
2030	C1orf85	8.496728e-01
2031	C1orf86	1
2032	C1orf87	7.153183e-01
2033	C1orf88	2.355314e-01
2034	C1orf89	3.765945e-01
2035	C1orf9	6.955527e-01
2036	C1orf91	1
2037	C1orf92	2.964998e-01
2038	C1orf93	4.937027e-01
2039	C1orf94	1.411785e-01
2040	C1orf95	1
2041	C1orf96	2.644927e-01
2042	C2	9.734675e-01
2043	C20orf103	2.614687e-02
2044	C20orf106	4.326720e-01
2045	C20orf107	7.518349e-02
2046	C20orf108	1
2047	C20orf11	1
2048	C20orf111	2.185858e-01
In gene C20orf112 the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 1283    n = 1	mu =   2.96e-07
2049	C20orf112	4.628566e-01
2050	C20orf114	2.565076e-01
2051	C20orf117	7.667266e-01
2052	C20orf118	1
2053	C20orf12	4.148787e-01
2054	C20orf132	5.630480e-01
2055	C20orf134	1
2056	C20orf135	1
2057	C20orf141	2.542687e-01
2058	C20orf144	1
2059	C20orf151	2.383611e-01
2060	C20orf152	8.233598e-01
2061	C20orf160	3.771567e-03
2062	C20orf165	3.024403e-01
2063	C20orf166	1
2064	C20orf177	1.709031e-01
2065	C20orf185	6.582222e-02
2066	C20orf186	5.373873e-03
2067	C20orf194	8.747937e-01
2068	C20orf195	2.976899e-01
2069	C20orf196	2.536368e-01
2070	C20orf197	6.076999e-02
2071	C20orf20	1
2072	C20orf24	1
2073	C20orf26	4.143983e-01
Done

Running MutSig 2:
Scatter job 23: processing genes 1984 - 2073
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C1orf26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.191388e-02	ci left: 9.098768e-01	ci right 9.208798e-01	k: 9155	n:10000
Cons ci ratio: 1.602146e-02	ci left: 8.498828e-01	ci right 8.637086e-01	k: 8569	n:10000
KS ci ratio: 2.757116e-02	ci left: 6.596787e-01	ci right 6.782228e-01	k: 6690	n:10000
C1orf26   10000 perm   2 sec   (5238 perm/sec)   p_kst 6.690000e-01   p_cons 8.569000e-01   p_joint 9.155000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf26.11_2775_10000_0.669_0.8569_0.9155.png
                gene_name: C1orf26
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 2 percent done.
C1orf9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.346742e-01	ci left: 7.281740e-02	ci right 8.342992e-02	k: 780	n:10000
Cons ci ratio: 2.108706e-01	ci left: 2.986994e-02	ci right 3.700523e-02	k: 333	n:10000
KS ci ratio: 6.587477e-02	ci left: 2.528084e-01	ci right 2.701307e-01	k: 2614	n:10000
C1orf9   10000 perm   2 sec   (5507 perm/sec)   p_kst 2.614000e-01   p_cons 3.330000e-02   p_joint 7.800000e-02

Joint ci ratio: 7.850234e-02	ci left: 1.064817e-01	ci right 1.152318e-01	k: 2216	n:20000
Cons ci ratio: 1.505158e-01	ci left: 3.032647e-02	ci right 3.531057e-02	k: 655	n:20000
KS ci ratio: 4.665936e-02	ci left: 2.547250e-01	ci right 2.669446e-01	k: 5216	n:20000
C1orf9   20000 perm   4 sec   (4953 perm/sec)   p_kst 2.608000e-01   p_cons 3.275000e-02   p_joint 1.108000e-01

Joint ci ratio: 7.629990e-02	ci left: 7.777290e-02	ci right 8.397522e-02	k: 2425	n:30000
Cons ci ratio: 1.253543e-01	ci left: 2.958465e-02	ci right 3.357342e-02	k: 946	n:30000
KS ci ratio: 3.832419e-02	ci left: 2.535858e-01	ci right 2.635276e-01	k: 7756	n:30000
C1orf9   30000 perm   6 sec   (4769 perm/sec)   p_kst 2.585333e-01   p_cons 3.153333e-02   p_joint 8.083333e-02

Joint ci ratio: 7.949883e-02	ci left: 5.501754e-02	ci right 5.959699e-02	k: 2291	n:40000
Cons ci ratio: 1.144326e-01	ci left: 2.686684e-02	ci right 3.015209e-02	k: 1139	n:40000
KS ci ratio: 3.310271e-02	ci left: 2.552590e-01	ci right 2.638760e-01	k: 10382	n:40000
C1orf9   40000 perm   9 sec   (4621 perm/sec)   p_kst 2.595500e-01   p_cons 2.847500e-02   p_joint 5.727500e-02

Joint ci ratio: 6.628151e-02	ci left: 6.320887e-02	ci right 6.756176e-02	k: 3268	n:50000
Cons ci ratio: 1.027983e-01	ci left: 2.680541e-02	ci right 2.972970e-02	k: 1412	n:50000
KS ci ratio: 2.966316e-02	ci left: 2.550049e-01	ci right 2.627031e-01	k: 12942	n:50000
C1orf9   50000 perm   11 sec   (4525 perm/sec)   p_kst 2.588400e-01   p_cons 2.824000e-02   p_joint 6.536000e-02

Joint ci ratio: 5.576062e-02	ci left: 7.397409e-02	ci right 7.823369e-02	k: 4565	n:60000
Cons ci ratio: 9.428903e-02	ci left: 2.667822e-02	ci right 2.933437e-02	k: 1679	n:60000
KS ci ratio: 2.713711e-02	ci left: 2.545191e-01	ci right 2.615377e-01	k: 15481	n:60000
C1orf9   60000 perm   13 sec   (4445 perm/sec)   p_kst 2.580167e-01   p_cons 2.798333e-02   p_joint 7.608333e-02

Outputting figure to mutsig2_images.part000000000023/C1orf9.9_3861_60000_0.25802_0.027983_0.076083.png
                gene_name: C1orf9
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.078 

Current progress: 4 percent done.
C20orf26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.409025e-02	ci left: 2.105324e-01	ci right 2.268318e-01	k: 2186	n:10000
Cons ci ratio: 1.218113e-02	ci left: 9.062768e-01	ci right 9.174819e-01	k: 9120	n:10000
KS ci ratio: 1.089014e-01	ci left: 1.084196e-01	ci right 1.210058e-01	k: 1146	n:10000
C20orf26   10000 perm   2 sec   (5891 perm/sec)   p_kst 1.146000e-01   p_cons 9.120000e-01   p_joint 2.186000e-01

Joint ci ratio: 5.176965e-02	ci left: 2.169990e-01	ci right 2.285817e-01	k: 4455	n:20000
Cons ci ratio: 8.593017e-03	ci left: 9.083457e-01	ci right 9.162340e-01	k: 18247	n:20000
KS ci ratio: 7.679852e-02	ci left: 1.108065e-01	ci right 1.197057e-01	k: 2304	n:20000
C20orf26   20000 perm   4 sec   (5325 perm/sec)   p_kst 1.152000e-01   p_cons 9.123500e-01   p_joint 2.227500e-01

Outputting figure to mutsig2_images.part000000000023/C20orf26.9_3850_20000_0.1152_0.91235_0.22275.png
                gene_name: C20orf26
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 6 percent done.
C20orf194
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.610433e-02	ci left: 4.098026e-01	ci right 4.292443e-01	k: 4195	n:10000
Cons ci ratio: 2.552671e-02	ci left: 6.931293e-01	ci right 7.111528e-01	k: 7022	n:10000
KS ci ratio: 6.067200e-02	ci left: 2.854779e-01	ci right 3.034419e-01	k: 2944	n:10000
C20orf194   10000 perm   2 sec   (5353 perm/sec)   p_kst 2.944000e-01   p_cons 7.022000e-01   p_joint 4.195000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf194.8_3682_10000_0.2944_0.7022_0.4195.png
                gene_name: C20orf194
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 8 percent done.
C20orf186
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.215023e-02	ci left: 4.538878e-01	ci right 4.735333e-01	k: 4637	n:10000
Cons ci ratio: 9.533935e-02	ci left: 1.376631e-01	ci right 1.515446e-01	k: 1445	n:10000
KS ci ratio: 1.814923e-02	ci left: 8.158839e-01	ci right 8.309272e-01	k: 8235	n:10000
C20orf186   10000 perm   2 sec   (5500 perm/sec)   p_kst 8.235000e-01   p_cons 1.445000e-01   p_joint 4.637000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf186.7_1909_10000_0.8235_0.1445_0.4637.png
                gene_name: C20orf186
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 10 percent done.
C20orf160
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.842576e-02	ci left: 5.000504e-01	ci right 5.197438e-01	k: 5099	n:10000
KS ci ratio: 1.050197e-02	ci left: 9.280257e-01	ci right 9.379203e-01	k: 9331	n:10000
C20orf160   10000 perm   2 sec   (6646 perm/sec)   p_kst 9.331000e-01   p_cons 5.099000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C20orf160.6_1334_10000_0.9331_0.5099_1.png
                gene_name: C20orf160
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
C20orf177
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.716754e-02	ci left: 6.662236e-01	ci right 6.846741e-01	k: 6755	n:10000
Cons ci ratio: 5.118453e-02	ci left: 3.601284e-01	ci right 3.791476e-01	k: 3696	n:10000
KS ci ratio: 1.022202e-02	ci left: 9.314385e-01	ci right 9.411054e-01	k: 9364	n:10000
C20orf177   10000 perm   2 sec   (6577 perm/sec)   p_kst 9.364000e-01   p_cons 3.696000e-01   p_joint 6.755000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf177.6_1156_10000_0.9364_0.3696_0.6755.png
                gene_name: C20orf177
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 14 percent done.
C20orf103
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.366775e-01	ci left: 7.078334e-02	ci right 8.126524e-02	k: 759	n:10000
Cons ci ratio: 5.115161e-02	ci left: 3.604268e-01	ci right 3.794491e-01	k: 3699	n:10000
KS ci ratio: 2.549086e-01	ci left: 2.015152e-02	ci right 2.613074e-02	k: 230	n:10000
C20orf103   10000 perm   1 sec   (6824 perm/sec)   p_kst 2.300000e-02   p_cons 3.699000e-01   p_joint 7.590000e-02

Joint ci ratio: 9.610131e-02	ci left: 7.309752e-02	ci right 8.052607e-02	k: 1535	n:20000
Cons ci ratio: 3.643865e-02	ci left: 3.598169e-01	ci right 3.732220e-01	k: 7330	n:20000
KS ci ratio: 1.800525e-01	ci left: 2.106263e-02	ci right 2.527757e-02	k: 462	n:20000
C20orf103   20000 perm   4 sec   (5709 perm/sec)   p_kst 2.310000e-02   p_cons 3.665000e-01   p_joint 7.675000e-02

Joint ci ratio: 9.538094e-02	ci left: 5.075222e-02	ci right 5.586806e-02	k: 1598	n:30000
Cons ci ratio: 2.977443e-02	ci left: 3.607117e-01	ci right 3.716476e-01	k: 10985	n:30000
KS ci ratio: 1.492846e-01	ci left: 2.078729e-02	ci right 2.417273e-02	k: 673	n:30000
C20orf103   30000 perm   5 sec   (5569 perm/sec)   p_kst 2.243333e-02   p_cons 3.661667e-01   p_joint 5.326667e-02

Joint ci ratio: 8.205523e-02	ci left: 5.175598e-02	ci right 5.620905e-02	k: 2158	n:40000
Cons ci ratio: 2.572164e-02	ci left: 3.625980e-01	ci right 3.720713e-01	k: 14693	n:40000
KS ci ratio: 1.315229e-01	ci left: 2.029445e-02	ci right 2.317557e-02	k: 868	n:40000
C20orf103   40000 perm   7 sec   (5463 perm/sec)   p_kst 2.170000e-02   p_cons 3.673250e-01   p_joint 5.395000e-02

Joint ci ratio: 8.931012e-02	ci left: 3.544066e-02	ci right 3.877336e-02	k: 1854	n:50000
Cons ci ratio: 2.301355e-02	ci left: 3.629527e-01	ci right 3.714228e-01	k: 18359	n:50000
KS ci ratio: 1.173759e-01	ci left: 2.053783e-02	ci right 2.311810e-02	k: 1090	n:50000
C20orf103   50000 perm   9 sec   (5360 perm/sec)   p_kst 2.180000e-02   p_cons 3.671800e-01   p_joint 3.708000e-02

Joint ci ratio: 8.309195e-02	ci left: 3.427855e-02	ci right 3.726658e-02	k: 2145	n:60000
Cons ci ratio: 2.096477e-02	ci left: 3.642890e-01	ci right 3.720238e-01	k: 22089	n:60000
KS ci ratio: 1.059233e-01	ci left: 2.113333e-02	ci right 2.351318e-02	k: 1338	n:60000
C20orf103   60000 perm   11 sec   (5246 perm/sec)   p_kst 2.230000e-02   p_cons 3.681500e-01   p_joint 3.575000e-02

Joint ci ratio: 7.737273e-02	ci left: 3.400118e-02	ci right 3.675180e-02	k: 2475	n:70000
Cons ci ratio: 1.945418e-02	ci left: 3.635134e-01	ci right 3.706690e-01	k: 25696	n:70000
KS ci ratio: 9.759314e-02	ci left: 2.142800e-02	ci right 2.364039e-02	k: 1576	n:70000
C20orf103   70000 perm   14 sec   (5147 perm/sec)   p_kst 2.251429e-02   p_cons 3.670857e-01   p_joint 3.535714e-02

Outputting figure to mutsig2_images.part000000000023/C20orf103.5_867_70000_0.022514_0.36709_0.035357.png
                gene_name: C20orf103
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.037 

Current progress: 16 percent done.
C20orf107
Processing conservation and coverage...
Processing mutations... 
Skipping 4 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 18 percent done.
C20orf117
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
Cons ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
KS ci ratio: 9.817468e-02	ci left: 1.307088e-01	ci right 1.443032e-01	k: 1374	n:10000
C20orf117   10000 perm   2 sec   (5373 perm/sec)   p_kst 1.374000e-01   p_cons 1.390000e-02   p_joint 1.450000e-02

Joint ci ratio: 1.257988e-01	ci left: 4.338038e-02	ci right 4.925242e-02	k: 925	n:20000
Cons ci ratio: 2.364985e-01	ci left: 1.194666e-02	ci right 1.519704e-02	k: 270	n:20000
KS ci ratio: 6.788338e-02	ci left: 1.380276e-01	ci right 1.477765e-01	k: 2857	n:20000
C20orf117   20000 perm   4 sec   (4902 perm/sec)   p_kst 1.428500e-01   p_cons 1.350000e-02   p_joint 4.625000e-02

Joint ci ratio: 1.327757e-01	ci left: 2.635586e-02	ci right 3.013624e-02	k: 846	n:30000
Cons ci ratio: 1.982318e-01	ci left: 1.159035e-02	ci right 1.417193e-02	k: 385	n:30000
KS ci ratio: 5.611593e-02	ci left: 1.359601e-01	ci right 1.438431e-01	k: 4196	n:30000
C20orf117   30000 perm   7 sec   (4497 perm/sec)   p_kst 1.398667e-01   p_cons 1.283333e-02   p_joint 2.820000e-02

Joint ci ratio: 2.129508e-01	ci left: 7.505266e-03	ci right 9.317188e-03	k: 335	n:40000
Cons ci ratio: 1.722973e-01	ci left: 1.167350e-02	ci right 1.389806e-02	k: 510	n:40000
KS ci ratio: 4.961277e-02	ci left: 1.316405e-01	ci right 1.383626e-01	k: 5399	n:40000
C20orf117   40000 perm   9 sec   (4414 perm/sec)   p_kst 1.349750e-01   p_cons 1.275000e-02   p_joint 8.375000e-03

Joint ci ratio: 2.008575e-01	ci left: 6.800464e-03	ci right 8.337538e-03	k: 377	n:50000
Cons ci ratio: 1.538335e-01	ci left: 1.183306e-02	ci right 1.382410e-02	k: 640	n:50000
KS ci ratio: 4.435990e-02	ci left: 1.320754e-01	ci right 1.380870e-01	k: 6753	n:50000
C20orf117   50000 perm   12 sec   (4332 perm/sec)   p_kst 1.350600e-01   p_cons 1.280000e-02   p_joint 7.540000e-03

Joint ci ratio: 1.917570e-01	ci left: 6.253247e-03	ci right 7.595113e-03	k: 414	n:60000
Cons ci ratio: 1.403565e-01	ci left: 1.193192e-02	ci right 1.374899e-02	k: 769	n:60000
KS ci ratio: 4.041940e-02	ci left: 1.327708e-01	ci right 1.382645e-01	k: 8130	n:60000
C20orf117   60000 perm   14 sec   (4271 perm/sec)   p_kst 1.355000e-01   p_cons 1.281667e-02   p_joint 6.900000e-03

Joint ci ratio: 1.396639e-01	ci left: 1.035083e-02	ci right 1.191866e-02	k: 778	n:70000
Cons ci ratio: 1.290266e-01	ci left: 1.217396e-02	ci right 1.386676e-02	k: 910	n:70000
KS ci ratio: 3.737367e-02	ci left: 1.332702e-01	ci right 1.383600e-01	k: 9506	n:70000
C20orf117   70000 perm   17 sec   (4206 perm/sec)   p_kst 1.358000e-01   p_cons 1.300000e-02   p_joint 1.111429e-02

Joint ci ratio: 1.376369e-01	ci left: 9.346232e-03	ci right 1.073964e-02	k: 802	n:80000
Cons ci ratio: 1.207606e-01	ci left: 1.221439e-02	ci right 1.379622e-02	k: 1039	n:80000
KS ci ratio: 3.494527e-02	ci left: 1.335324e-01	ci right 1.382941e-01	k: 10872	n:80000
C20orf117   80000 perm   19 sec   (4149 perm/sec)   p_kst 1.359000e-01   p_cons 1.298750e-02   p_joint 1.002500e-02

Joint ci ratio: 1.488755e-01	ci left: 7.075075e-03	ci right 8.223667e-03	k: 687	n:90000
Cons ci ratio: 1.097455e-01	ci left: 1.321012e-02	ci right 1.475477e-02	k: 1257	n:90000
KS ci ratio: 3.301568e-02	ci left: 1.331819e-01	ci right 1.376638e-01	k: 12187	n:90000
C20orf117   90000 perm   22 sec   (4091 perm/sec)   p_kst 1.354111e-01   p_cons 1.396667e-02   p_joint 7.633333e-03

Joint ci ratio: 1.144750e-01	ci left: 1.092610e-02	ci right 1.226245e-02	k: 1158	n:100000
Cons ci ratio: 1.049074e-01	ci left: 1.304711e-02	ci right 1.450129e-02	k: 1376	n:100000
KS ci ratio: 3.134583e-02	ci left: 1.331161e-01	ci right 1.373651e-01	k: 13523	n:100000
C20orf117   100000 perm   25 sec   (4032 perm/sec)   p_kst 1.352300e-01   p_cons 1.376000e-02   p_joint 1.158000e-02

Joint ci ratio: 9.439244e-02	ci left: 1.470721e-02	ci right 1.617305e-02	k: 1697	n:110000
Cons ci ratio: 9.948395e-02	ci left: 1.322530e-02	ci right 1.461869e-02	k: 1530	n:110000
KS ci ratio: 2.991663e-02	ci left: 1.329857e-01	ci right 1.370336e-01	k: 14850	n:110000
C20orf117   110000 perm   28 sec   (3974 perm/sec)   p_kst 1.350000e-01   p_cons 1.390909e-02   p_joint 1.542727e-02

Outputting figure to mutsig2_images.part000000000023/C20orf117.5_5108_110000_0.135_0.013909_0.015427.png
                gene_name: C20orf117
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 20 percent done.
C20orf132
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.950997e-02	ci left: 2.935057e-01	ci right 3.116095e-01	k: 3025	n:10000
Cons ci ratio: 6.429240e-02	ci left: 2.622072e-01	ci right 2.797264e-01	k: 2709	n:10000
KS ci ratio: 5.537902e-02	ci left: 3.244576e-01	ci right 3.430393e-01	k: 3337	n:10000
C20orf132   10000 perm   2 sec   (5546 perm/sec)   p_kst 3.337000e-01   p_cons 2.709000e-01   p_joint 3.025000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf132.5_3234_10000_0.3337_0.2709_0.3025.png
                gene_name: C20orf132
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 22 percent done.
C20orf185
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.228391e-02	ci left: 5.861050e-01	ci right 6.054392e-01	k: 5958	n:10000
Cons ci ratio: 9.323853e-02	ci left: 1.431522e-01	ci right 1.572522e-01	k: 1501	n:10000
KS ci ratio: 3.260658e-02	ci left: 5.812885e-01	ci right 6.006585e-01	k: 5910	n:10000
C20orf185   10000 perm   1 sec   (6704 perm/sec)   p_kst 5.910000e-01   p_cons 1.501000e-01   p_joint 5.958000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf185.5_1491_10000_0.591_0.1501_0.5958.png
                gene_name: C20orf185
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 24 percent done.
C1orf177
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.553281e-02	ci left: 6.930285e-01	ci right 7.110537e-01	k: 7021	n:10000
Cons ci ratio: 3.147254e-02	ci left: 5.983512e-01	ci right 6.175859e-01	k: 6080	n:10000
KS ci ratio: 4.323372e-02	ci left: 4.413126e-01	ci right 4.609159e-01	k: 4511	n:10000
C1orf177   10000 perm   2 sec   (6512 perm/sec)   p_kst 4.511000e-01   p_cons 6.080000e-01   p_joint 7.021000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf177.4_1362_10000_0.4511_0.608_0.7021.png
                gene_name: C1orf177
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 25 percent done.
C1orf38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.035729e-02	ci left: 7.794504e-01	ci right 7.955817e-01	k: 7876	n:10000
Cons ci ratio: 2.917451e-02	ci left: 6.340217e-01	ci right 6.528946e-01	k: 6435	n:10000
KS ci ratio: 2.684594e-02	ci left: 6.714609e-01	ci right 6.898338e-01	k: 6807	n:10000
C1orf38   10000 perm   2 sec   (6299 perm/sec)   p_kst 6.807000e-01   p_cons 6.435000e-01   p_joint 7.876000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf38.4_1956_10000_0.6807_0.6435_0.7876.png
                gene_name: C1orf38
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 27 percent done.
C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.789127e-02	ci left: 5.070521e-01	ci right 5.267381e-01	k: 5169	n:10000
KS ci ratio: 1.512887e-02	ci left: 8.636592e-01	ci right 8.769242e-01	k: 8704	n:10000
C2   10000 perm   2 sec   (6074 perm/sec)   p_kst 8.704000e-01   p_cons 5.169000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C2.4_2408_10000_0.8704_0.5169_1.png
                gene_name: C2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
C20orf114
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.534834e-02	ci left: 2.049112e-01	ci right 2.210563e-01	k: 2129	n:10000
Cons ci ratio: 9.222915e-02	ci left: 1.458981e-01	ci right 1.601047e-01	k: 1529	n:10000
KS ci ratio: 6.751719e-02	ci left: 2.435138e-01	ci right 2.606309e-01	k: 2520	n:10000
C20orf114   10000 perm   2 sec   (6437 perm/sec)   p_kst 2.520000e-01   p_cons 1.529000e-01   p_joint 2.129000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf114.4_1515_10000_0.252_0.1529_0.2129.png
                gene_name: C20orf114
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 31 percent done.
C20orf12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.277146e-02	ci left: 2.166492e-01	ci right 2.331114e-01	k: 2248	n:10000
Cons ci ratio: 7.428590e-02	ci left: 2.096447e-01	ci right 2.259200e-01	k: 2177	n:10000
KS ci ratio: 6.064282e-02	ci left: 2.856761e-01	ci right 3.036436e-01	k: 2946	n:10000
C20orf12   10000 perm   2 sec   (6130 perm/sec)   p_kst 2.946000e-01   p_cons 2.177000e-01   p_joint 2.248000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf12.4_2339_10000_0.2946_0.2177_0.2248.png
                gene_name: C20orf12
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 33 percent done.
C1orf189
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.940376e-02	ci left: 6.304019e-01	ci right 6.493165e-01	k: 6399	n:10000
Cons ci ratio: 6.824099e-02	ci left: 2.395602e-01	ci right 2.565868e-01	k: 2480	n:10000
KS ci ratio: 3.567568e-02	ci left: 5.370809e-01	ci right 5.566918e-01	k: 5469	n:10000
C1orf189   10000 perm   1 sec   (7670 perm/sec)   p_kst 5.469000e-01   p_cons 2.480000e-01   p_joint 6.399000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf189.3_322_10000_0.5469_0.248_0.6399.png
                gene_name: C1orf189
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 35 percent done.
C1orf25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.879861e-02	ci left: 2.985619e-01	ci right 3.167503e-01	k: 3076	n:10000
Cons ci ratio: 1.314164e-01	ci left: 7.630693e-02	ci right 8.713821e-02	k: 816	n:10000
KS ci ratio: 2.249902e-02	ci left: 7.436154e-01	ci right 7.606374e-01	k: 7522	n:10000
C1orf25   10000 perm   2 sec   (6513 perm/sec)   p_kst 7.522000e-01   p_cons 8.160000e-02   p_joint 3.076000e-01

Joint ci ratio: 4.071477e-02	ci left: 3.102052e-01	ci right 3.231481e-01	k: 6333	n:20000
Cons ci ratio: 9.228307e-02	ci left: 7.891869e-02	ci right 8.660313e-02	k: 1654	n:20000
KS ci ratio: 1.601173e-02	ci left: 7.437362e-01	ci right 7.557911e-01	k: 14996	n:20000
C1orf25   20000 perm   3 sec   (5817 perm/sec)   p_kst 7.498000e-01   p_cons 8.270000e-02   p_joint 3.166500e-01

Outputting figure to mutsig2_images.part000000000023/C1orf25.3_2262_20000_0.7498_0.0827_0.31665.png
                gene_name: C1orf25
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 37 percent done.
C1orf27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.280039e-02	ci left: 8.977499e-01	ci right 9.094138e-01	k: 9037	n:10000
Cons ci ratio: 1.731953e-02	ci left: 8.293074e-01	ci right 8.438960e-01	k: 8367	n:10000
KS ci ratio: 4.555967e-02	ci left: 4.155831e-01	ci right 4.350604e-01	k: 4253	n:10000
C1orf27   10000 perm   1 sec   (6680 perm/sec)   p_kst 4.253000e-01   p_cons 8.367000e-01   p_joint 9.037000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf27.3_1417_10000_0.4253_0.8367_0.9037.png
                gene_name: C1orf27
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 39 percent done.
C1orf49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
Cons ci ratio: 9.042192e-02	ci left: 1.509997e-01	ci right 1.654000e-01	k: 1581	n:10000
KS ci ratio: 6.234863e-02	ci left: 2.743835e-01	ci right 2.921429e-01	k: 2832	n:10000
C1orf49   10000 perm   1 sec   (7271 perm/sec)   p_kst 2.832000e-01   p_cons 1.581000e-01   p_joint 1.422000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf49.3_861_10000_0.2832_0.1581_0.1422.png
                gene_name: C1orf49
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 41 percent done.
C1orf52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.603814e-02	ci left: 4.105002e-01	ci right 4.299463e-01	k: 4202	n:10000
Cons ci ratio: 2.209473e-02	ci left: 7.503916e-01	ci right 7.672574e-01	k: 7589	n:10000
KS ci ratio: 6.771470e-02	ci left: 2.424265e-01	ci right 2.595188e-01	k: 2509	n:10000
C1orf52   10000 perm   1 sec   (7184 perm/sec)   p_kst 2.509000e-01   p_cons 7.589000e-01   p_joint 4.202000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf52.3_561_10000_0.2509_0.7589_0.4202.png
                gene_name: C1orf52
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 43 percent done.
C1orf55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.851016e-02	ci left: 6.445828e-01	ci right 6.633275e-01	k: 6540	n:10000
Cons ci ratio: 5.581766e-02	ci left: 3.209831e-01	ci right 3.395159e-01	k: 3302	n:10000
KS ci ratio: 3.206323e-02	ci left: 5.894169e-01	ci right 6.087254e-01	k: 5991	n:10000
C1orf55   10000 perm   1 sec   (7021 perm/sec)   p_kst 5.991000e-01   p_cons 3.302000e-01   p_joint 6.540000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf55.3_1384_10000_0.5991_0.3302_0.654.png
                gene_name: C1orf55
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 45 percent done.
C1orf66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.616904e-02	ci left: 6.825442e-01	ci right 7.007441e-01	k: 6917	n:10000
KS ci ratio: 1.895557e-02	ci left: 8.026788e-01	ci right 8.181399e-01	k: 8105	n:10000
C1orf66   10000 perm   2 sec   (6648 perm/sec)   p_kst 8.105000e-01   p_cons 6.917000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C1orf66.3_1460_10000_0.8105_0.6917_1.png
                gene_name: C1orf66
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
C1orf77
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.852581e-02	ci left: 4.987503e-01	ci right 5.184447e-01	k: 5086	n:10000
KS ci ratio: 1.917731e-02	ci left: 7.990245e-01	ci right 8.145964e-01	k: 8069	n:10000
C1orf77   10000 perm   1 sec   (7098 perm/sec)   p_kst 8.069000e-01   p_cons 5.086000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C1orf77.3_767_10000_0.8069_0.5086_1.png
                gene_name: C1orf77
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
C1orf87
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.804816e-02	ci left: 3.040161e-01	ci right 3.222929e-01	k: 3131	n:10000
Cons ci ratio: 1.495415e-02	ci left: 8.663151e-01	ci right 8.794668e-01	k: 8730	n:10000
KS ci ratio: 1.092784e-01	ci left: 1.077365e-01	ci right 1.202894e-01	k: 1139	n:10000
C1orf87   10000 perm   2 sec   (6246 perm/sec)   p_kst 1.139000e-01   p_cons 8.730000e-01   p_joint 3.131000e-01

Joint ci ratio: 3.853337e-02	ci left: 3.343789e-01	ci right 3.475673e-01	k: 6819	n:20000
Cons ci ratio: 1.069203e-02	ci left: 8.657679e-01	ci right 8.751241e-01	k: 17410	n:20000
KS ci ratio: 7.687393e-02	ci left: 1.106099e-01	ci right 1.195024e-01	k: 2300	n:20000
C1orf87   20000 perm   3 sec   (5718 perm/sec)   p_kst 1.150000e-01   p_cons 8.705000e-01   p_joint 3.409500e-01

Outputting figure to mutsig2_images.part000000000023/C1orf87.3_1685_20000_0.115_0.8705_0.34095.png
                gene_name: C1orf87
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 51 percent done.
C1orf92
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.594306e-02	ci left: 2.524128e-01	ci right 2.697266e-01	k: 2610	n:10000
Cons ci ratio: 3.706525e-02	ci left: 5.180585e-01	ci right 5.377252e-01	k: 5279	n:10000
KS ci ratio: 9.611774e-02	ci left: 1.357035e-01	ci right 1.495054e-01	k: 1425	n:10000
C1orf92   10000 perm   1 sec   (6810 perm/sec)   p_kst 1.425000e-01   p_cons 5.279000e-01   p_joint 2.610000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf92.3_1740_10000_0.1425_0.5279_0.261.png
                gene_name: C1orf92
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 53 percent done.
C1orf94
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.130045e-01	ci left: 1.012990e-01	ci right 1.135307e-01	k: 1073	n:10000
Cons ci ratio: 3.373175e-02	ci left: 5.647390e-01	ci right 5.842175e-01	k: 5745	n:10000
KS ci ratio: 1.797419e-01	ci left: 4.130699e-02	ci right 4.956044e-02	k: 453	n:10000
C1orf94   10000 perm   2 sec   (6585 perm/sec)   p_kst 4.530000e-02   p_cons 5.745000e-01   p_joint 1.073000e-01

Joint ci ratio: 8.336270e-02	ci left: 9.538497e-02	ci right 1.037319e-01	k: 1990	n:20000
Cons ci ratio: 2.258615e-02	ci left: 5.941239e-01	ci right 6.077467e-01	k: 12019	n:20000
KS ci ratio: 1.295859e-01	ci left: 4.090836e-02	ci right 4.662524e-02	k: 874	n:20000
C1orf94   20000 perm   3 sec   (5914 perm/sec)   p_kst 4.370000e-02   p_cons 6.009500e-01   p_joint 9.950000e-02

Joint ci ratio: 6.892117e-02	ci left: 9.396881e-02	ci right 1.007094e-01	k: 2919	n:30000
Cons ci ratio: 1.856834e-02	ci left: 5.920918e-01	ci right 6.032226e-01	k: 17930	n:30000
KS ci ratio: 1.071154e-01	ci left: 4.043988e-02	ci right 4.504921e-02	k: 1281	n:30000
C1orf94   30000 perm   5 sec   (5622 perm/sec)   p_kst 4.270000e-02   p_cons 5.976667e-01   p_joint 9.730000e-02

Joint ci ratio: 6.709489e-02	ci left: 7.598089e-02	ci right 8.128047e-02	k: 3144	n:40000
Cons ci ratio: 1.628612e-02	ci left: 5.867139e-01	ci right 5.963728e-01	k: 23662	n:40000
KS ci ratio: 9.224012e-02	ci left: 4.120390e-02	ci right 4.521275e-02	k: 1727	n:40000
C1orf94   40000 perm   7 sec   (5442 perm/sec)   p_kst 4.317500e-02   p_cons 5.915500e-01   p_joint 7.860000e-02

Outputting figure to mutsig2_images.part000000000023/C1orf94.3_1825_40000_0.043175_0.59155_0.0786.png
                gene_name: C1orf94
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.081 

Current progress: 55 percent done.
C20orf111
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.744543e-02	ci left: 3.959551e-01	ci right 4.152999e-01	k: 4056	n:10000
Cons ci ratio: 3.369038e-02	ci left: 5.653406e-01	ci right 5.848156e-01	k: 5751	n:10000
KS ci ratio: 6.369573e-02	ci left: 2.658691e-01	ci right 2.834624e-01	k: 2746	n:10000
C20orf111   10000 perm   1 sec   (7292 perm/sec)   p_kst 2.746000e-01   p_cons 5.751000e-01   p_joint 4.056000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf111.3_891_10000_0.2746_0.5751_0.4056.png
                gene_name: C20orf111
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 57 percent done.
C20orf112
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.875175e-02	ci left: 8.060295e-01	ci right 8.213873e-01	k: 8138	n:10000
KS ci ratio: 3.155843e-02	ci left: 5.970460e-01	ci right 6.162918e-01	k: 6067	n:10000
C20orf112   10000 perm   2 sec   (6492 perm/sec)   p_kst 6.067000e-01   p_cons 8.138000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C20orf112.3_1339_10000_0.6067_0.8138_1.png
                gene_name: C20orf112
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
C20orf151
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
Cons ci ratio: 3.187220e-01	ci left: 1.252543e-02	ci right 1.736316e-02	k: 148	n:10000
KS ci ratio: 1.228514e-01	ci left: 8.669623e-02	ci right 9.814248e-02	k: 923	n:10000
C20orf151   10000 perm   1 sec   (6681 perm/sec)   p_kst 9.230000e-02   p_cons 1.480000e-02   p_joint 1.240000e-02

Joint ci ratio: 2.261475e-01	ci left: 1.312511e-02	ci right 1.651809e-02	k: 295	n:20000
Cons ci ratio: 2.289106e-01	ci left: 1.279482e-02	ci right 1.614852e-02	k: 288	n:20000
KS ci ratio: 8.768346e-02	ci left: 8.685265e-02	ci right 9.486676e-02	k: 1816	n:20000
C20orf151   20000 perm   3 sec   (5991 perm/sec)   p_kst 9.080000e-02   p_cons 1.440000e-02   p_joint 1.475000e-02

Joint ci ratio: 1.577530e-01	ci left: 1.857388e-02	ci right 2.178665e-02	k: 604	n:30000
Cons ci ratio: 1.861452e-01	ci left: 1.320961e-02	ci right 1.595225e-02	k: 436	n:30000
KS ci ratio: 7.100073e-02	ci left: 8.894916e-02	ci right 9.553005e-02	k: 2766	n:30000
C20orf151   30000 perm   5 sec   (5716 perm/sec)   p_kst 9.220000e-02   p_cons 1.453333e-02   p_joint 2.013333e-02

Joint ci ratio: 1.388002e-01	ci left: 1.819155e-02	ci right 2.092882e-02	k: 781	n:40000
Cons ci ratio: 1.622941e-01	ci left: 1.320738e-02	ci right 1.556390e-02	k: 574	n:40000
KS ci ratio: 6.155606e-02	ci left: 8.920944e-02	ci right 9.489994e-02	k: 3681	n:40000
C20orf151   40000 perm   7 sec   (5543 perm/sec)   p_kst 9.202500e-02   p_cons 1.435000e-02   p_joint 1.952500e-02

Joint ci ratio: 9.169825e-02	ci left: 3.364085e-02	ci right 3.689340e-02	k: 1762	n:50000
Cons ci ratio: 1.460653e-01	ci left: 1.316194e-02	ci right 1.525502e-02	k: 709	n:50000
KS ci ratio: 5.571665e-02	ci left: 8.756465e-02	ci right 9.260306e-02	k: 4503	n:50000
C20orf151   50000 perm   9 sec   (5397 perm/sec)   p_kst 9.006000e-02   p_cons 1.418000e-02   p_joint 3.524000e-02

Joint ci ratio: 1.057216e-01	ci left: 2.121451e-02	ci right 2.359867e-02	k: 1343	n:60000
Cons ci ratio: 1.339785e-01	ci left: 1.312347e-02	ci right 1.502396e-02	k: 843	n:60000
KS ci ratio: 5.082498e-02	ci left: 8.790287e-02	ci right 9.250352e-02	k: 5411	n:60000
C20orf151   60000 perm   11 sec   (5274 perm/sec)   p_kst 9.018333e-02   p_cons 1.405000e-02   p_joint 2.238333e-02

Joint ci ratio: 9.768824e-02	ci left: 2.138617e-02	ci right 2.359651e-02	k: 1573	n:70000
Cons ci ratio: 1.249224e-01	ci left: 1.300422e-02	ci right 1.475070e-02	k: 970	n:70000
KS ci ratio: 4.705893e-02	ci left: 8.805946e-02	ci right 9.231744e-02	k: 6312	n:70000
C20orf151   70000 perm   14 sec   (5161 perm/sec)   p_kst 9.017143e-02   p_cons 1.385714e-02   p_joint 2.247143e-02

Joint ci ratio: 9.308346e-02	ci left: 2.067705e-02	ci right 2.270785e-02	k: 1734	n:80000
Cons ci ratio: 1.172144e-01	ci left: 1.297874e-02	ci right 1.460680e-02	k: 1102	n:80000
KS ci ratio: 4.409645e-02	ci left: 8.791416e-02	ci right 9.189064e-02	k: 7191	n:80000
C20orf151   80000 perm   16 sec   (5045 perm/sec)   p_kst 8.988750e-02   p_cons 1.377500e-02   p_joint 2.167500e-02

Joint ci ratio: 7.767131e-02	ci left: 2.645219e-02	ci right 2.860064e-02	k: 2476	n:90000
Cons ci ratio: 1.106862e-01	ci left: 1.298313e-02	ci right 1.451511e-02	k: 1236	n:90000
KS ci ratio: 4.161129e-02	ci left: 8.788484e-02	ci right 9.163054e-02	k: 8077	n:90000
C20orf151   90000 perm   18 sec   (4951 perm/sec)   p_kst 8.974444e-02   p_cons 1.373333e-02   p_joint 2.751111e-02

Joint ci ratio: 8.095408e-02	ci left: 2.198174e-02	ci right 2.384608e-02	k: 2290	n:100000
Cons ci ratio: 1.058070e-01	ci left: 1.282309e-02	ci right 1.426533e-02	k: 1353	n:100000
KS ci ratio: 3.954268e-02	ci left: 8.770790e-02	ci right 9.125595e-02	k: 8947	n:100000
C20orf151   100000 perm   21 sec   (4845 perm/sec)   p_kst 8.947000e-02   p_cons 1.353000e-02   p_joint 2.290000e-02

Joint ci ratio: 9.336457e-02	ci left: 1.503579e-02	ci right 1.651717e-02	k: 1734	n:110000
Cons ci ratio: 1.009312e-01	ci left: 1.284406e-02	ci right 1.421813e-02	k: 1487	n:110000
KS ci ratio: 3.770626e-02	ci left: 8.777427e-02	ci right 9.115650e-02	k: 9840	n:110000
C20orf151   110000 perm   23 sec   (4721 perm/sec)   p_kst 8.945455e-02   p_cons 1.351818e-02   p_joint 1.576364e-02

Joint ci ratio: 6.498105e-02	ci left: 2.847606e-02	ci right 3.039677e-02	k: 3531	n:120000
Cons ci ratio: 9.631216e-02	ci left: 1.296042e-02	ci right 1.427990e-02	k: 1633	n:120000
KS ci ratio: 3.613917e-02	ci left: 8.767573e-02	ci right 9.091081e-02	k: 10714	n:120000
C20orf151   120000 perm   26 sec   (4608 perm/sec)   p_kst 8.928333e-02   p_cons 1.360833e-02   p_joint 2.942500e-02

Outputting figure to mutsig2_images.part000000000023/C20orf151.3_2047_120000_0.089283_0.013608_0.029425.png
                gene_name: C20orf151
               theta_stop: 0.096 
                    nperm: 120000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 61 percent done.
C1orf175
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.466281e-02	ci left: 7.074534e-01	ci right 7.252204e-01	k: 7164	n:10000
KS ci ratio: 1.093240e-02	ci left: 9.226548e-01	ci right 9.328943e-01	k: 9279	n:10000
C1orf175   10000 perm   2 sec   (6254 perm/sec)   p_kst 9.279000e-01   p_cons 7.164000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C1orf175.2_4060_10000_0.9279_0.7164_1.png
                gene_name: C1orf175
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
C1orf183
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.873806e-03	ci left: 9.573329e-01	ci right 9.649955e-01	k: 9613	n:10000
Cons ci ratio: 1.890621e-02	ci left: 8.034910e-01	ci right 8.189273e-01	k: 8113	n:10000
KS ci ratio: 3.949308e-02	ci left: 4.863528e-01	ci right 5.060494e-01	k: 4962	n:10000
C1orf183   10000 perm   1 sec   (7552 perm/sec)   p_kst 4.962000e-01   p_cons 8.113000e-01   p_joint 9.613000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf183.2_918_10000_0.4962_0.8113_0.9613.png
                gene_name: C1orf183
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 65 percent done.
C1orf187
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.965007e-02	ci left: 1.272828e-01	ci right 1.407312e-01	k: 1339	n:10000
Cons ci ratio: 5.319849e-02	ci left: 3.424348e-01	ci right 3.612516e-01	k: 3518	n:10000
KS ci ratio: 1.014497e-01	ci left: 1.232714e-01	ci right 1.365450e-01	k: 1298	n:10000
C1orf187   10000 perm   1 sec   (7496 perm/sec)   p_kst 1.298000e-01   p_cons 3.518000e-01   p_joint 1.339000e-01

Joint ci ratio: 8.620424e-02	ci left: 8.964657e-02	ci right 9.777200e-02	k: 1873	n:20000
Cons ci ratio: 3.731784e-02	ci left: 3.488626e-01	ci right 3.621795e-01	k: 7110	n:20000
KS ci ratio: 7.123371e-02	ci left: 1.267960e-01	ci right 1.362115e-01	k: 2629	n:20000
C1orf187   20000 perm   3 sec   (6560 perm/sec)   p_kst 1.314500e-01   p_cons 3.555000e-01   p_joint 9.365000e-02

Outputting figure to mutsig2_images.part000000000023/C1orf187.2_1074_20000_0.13145_0.3555_0.09365.png
                gene_name: C1orf187
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.098 

Current progress: 67 percent done.
C1orf192
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.312653e-02	ci left: 7.331027e-01	ci right 7.503563e-01	k: 7418	n:10000
KS ci ratio: 1.412003e-02	ci left: 8.787895e-01	ci right 8.913852e-01	k: 8852	n:10000
C1orf192   10000 perm   1 sec   (7990 perm/sec)   p_kst 8.852000e-01   p_cons 7.418000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C1orf192.2_554_10000_0.8852_0.7418_1.png
                gene_name: C1orf192
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
C1orf194
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.048496e-02	ci left: 7.773223e-01	ci right 7.935111e-01	k: 7855	n:10000
KS ci ratio: 4.472179e-02	ci left: 4.246552e-01	ci right 4.441830e-01	k: 4344	n:10000
C1orf194   10000 perm   1 sec   (7797 perm/sec)   p_kst 4.344000e-01   p_cons 7.855000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C1orf194.2_494_10000_0.4344_0.7855_1.png
                gene_name: C1orf194
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
C1orf198
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.101891e-02	ci left: 6.052801e-01	ci right 6.244529e-01	k: 6149	n:10000
KS ci ratio: 2.677805e-02	ci left: 6.725690e-01	ci right 6.909251e-01	k: 6818	n:10000
C1orf198   10000 perm   1 sec   (7476 perm/sec)   p_kst 6.818000e-01   p_cons 6.149000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C1orf198.2_1000_10000_0.6818_0.6149_1.png
                gene_name: C1orf198
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
C1orf226
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.152409e-01	ci left: 9.769325e-02	ci right 1.097387e-01	k: 1036	n:10000
Cons ci ratio: 1.670282e-01	ci left: 4.782537e-02	ci right 5.663779e-02	k: 521	n:10000
KS ci ratio: 3.556068e-02	ci left: 5.386835e-01	ci right 5.582883e-01	k: 5485	n:10000
C1orf226   10000 perm   1 sec   (7342 perm/sec)   p_kst 5.485000e-01   p_cons 5.210000e-02   p_joint 1.036000e-01

Joint ci ratio: 8.260454e-02	ci left: 9.700431e-02	ci right 1.054120e-01	k: 2023	n:20000
Cons ci ratio: 1.077194e-01	ci left: 5.874541e-02	ci right 6.548259e-02	k: 1241	n:20000
KS ci ratio: 2.513668e-02	ci left: 5.417718e-01	ci right 5.556141e-01	k: 10974	n:20000
C1orf226   20000 perm   3 sec   (6579 perm/sec)   p_kst 5.487000e-01   p_cons 6.205000e-02   p_joint 1.011500e-01

Joint ci ratio: 6.793326e-02	ci left: 9.649612e-02	ci right 1.033149e-01	k: 2996	n:30000
Cons ci ratio: 8.762768e-02	ci left: 5.978667e-02	ci right 6.529843e-02	k: 1875	n:30000
KS ci ratio: 2.052170e-02	ci left: 5.431146e-01	ci right 5.544093e-01	k: 16463	n:30000
C1orf226   30000 perm   5 sec   (6274 perm/sec)   p_kst 5.487667e-01   p_cons 6.250000e-02   p_joint 9.986667e-02

Outputting figure to mutsig2_images.part000000000023/C1orf226.2_960_30000_0.54877_0.0625_0.099867.png
                gene_name: C1orf226
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.100 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 75 percent done.
C1orf43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.945480e-02	ci left: 6.295976e-01	ci right 6.485213e-01	k: 6391	n:10000
Cons ci ratio: 5.152669e-02	ci left: 3.570460e-01	ci right 3.760318e-01	k: 3665	n:10000
KS ci ratio: 4.182965e-02	ci left: 4.576816e-01	ci right 4.773374e-01	k: 4675	n:10000
C1orf43   10000 perm   1 sec   (7952 perm/sec)   p_kst 4.675000e-01   p_cons 3.665000e-01   p_joint 6.391000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf43.2_790_10000_0.4675_0.3665_0.6391.png
                gene_name: C1orf43
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 76 percent done.
C1orf50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.180047e-02	ci left: 2.779488e-01	ci right 2.957755e-01	k: 2868	n:10000
Cons ci ratio: 1.381275e-02	ci left: 8.832939e-01	ci right 8.956782e-01	k: 8896	n:10000
KS ci ratio: 7.428590e-02	ci left: 2.096447e-01	ci right 2.259200e-01	k: 2177	n:10000
C1orf50   10000 perm   1 sec   (8031 perm/sec)   p_kst 2.177000e-01   p_cons 8.896000e-01   p_joint 2.868000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf50.2_620_10000_0.2177_0.8896_0.2868.png
                gene_name: C1orf50
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 78 percent done.
C1orf51
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.092516e-02	ci left: 4.685668e-01	ci right 4.882458e-01	k: 4784	n:10000
KS ci ratio: 1.276362e-02	ci left: 8.982632e-01	ci right 9.099002e-01	k: 9042	n:10000
C1orf51   10000 perm   1 sec   (7231 perm/sec)   p_kst 9.042000e-01   p_cons 4.784000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C1orf51.2_1178_10000_0.9042_0.4784_1.png
                gene_name: C1orf51
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
C1orf57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.937791e-02	ci left: 3.769402e-01	ci right 3.961259e-01	k: 3865	n:10000
KS ci ratio: 2.713038e-02	ci left: 6.668278e-01	ci right 6.852695e-01	k: 6761	n:10000
C1orf57   10000 perm   1 sec   (7206 perm/sec)   p_kst 6.761000e-01   p_cons 3.865000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C1orf57.2_593_10000_0.6761_0.3865_1.png
                gene_name: C1orf57
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
C1orf58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.138797e-02	ci left: 7.622312e-01	ci right 7.788109e-01	k: 7706	n:10000
Cons ci ratio: 5.186117e-02	ci left: 3.540633e-01	ci right 3.730162e-01	k: 3635	n:10000
KS ci ratio: 5.768586e-02	ci left: 3.066941e-01	ci right 3.250132e-01	k: 3158	n:10000
C1orf58   10000 perm   1 sec   (7179 perm/sec)   p_kst 3.158000e-01   p_cons 3.635000e-01   p_joint 7.706000e-01

Outputting figure to mutsig2_images.part000000000023/C1orf58.2_1284_10000_0.3158_0.3635_0.7706.png
                gene_name: C1orf58
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 84 percent done.
C1orf61
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.541582e-02	ci left: 2.046155e-01	ci right 2.207523e-01	k: 2126	n:10000
KS ci ratio: 2.714896e-02	ci left: 6.665257e-01	ci right 6.849718e-01	k: 6758	n:10000
C1orf61   10000 perm   1 sec   (7367 perm/sec)   p_kst 6.758000e-01   p_cons 2.126000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C1orf61.2_491_10000_0.6758_0.2126_1.png
                gene_name: C1orf61
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
C1orf65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.453175e-02	ci left: 5.532111e-01	ci right 5.727522e-01	k: 5630	n:10000
KS ci ratio: 2.840317e-02	ci left: 6.462931e-01	ci right 6.650161e-01	k: 6557	n:10000
C1orf65   10000 perm   2 sec   (6251 perm/sec)   p_kst 6.557000e-01   p_cons 5.630000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C1orf65.2_1876_10000_0.6557_0.563_1.png
                gene_name: C1orf65
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
C1orf74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.629514e-01	ci left: 5.022725e-02	ci right 5.923435e-02	k: 546	n:10000
Cons ci ratio: 1.801579e-01	ci left: 4.111563e-02	ci right 4.935192e-02	k: 451	n:10000
KS ci ratio: 6.000711e-02	ci left: 2.900365e-01	ci right 3.080807e-01	k: 2990	n:10000
C1orf74   10000 perm   1 sec   (7348 perm/sec)   p_kst 2.990000e-01   p_cons 4.510000e-02   p_joint 5.460000e-02

Joint ci ratio: 8.264998e-02	ci left: 9.690616e-02	ci right 1.053102e-01	k: 2021	n:20000
Cons ci ratio: 1.264445e-01	ci left: 4.294396e-02	ci right 4.878899e-02	k: 916	n:20000
KS ci ratio: 4.267573e-02	ci left: 2.903244e-01	ci right 3.030348e-01	k: 5933	n:20000
C1orf74   20000 perm   3 sec   (6745 perm/sec)   p_kst 2.966500e-01   p_cons 4.580000e-02   p_joint 1.010500e-01

Joint ci ratio: 7.846694e-02	ci left: 7.377857e-02	ci right 7.983702e-02	k: 2303	n:30000
Cons ci ratio: 1.026376e-01	ci left: 4.398204e-02	ci right 4.877297e-02	k: 1390	n:30000
KS ci ratio: 3.483072e-02	ci left: 2.916667e-01	ci right 3.020393e-01	k: 8905	n:30000
C1orf74   30000 perm   5 sec   (6434 perm/sec)   p_kst 2.968333e-01   p_cons 4.633333e-02   p_joint 7.676667e-02

Joint ci ratio: 6.204915e-02	ci left: 8.790295e-02	ci right 9.355663e-02	k: 3628	n:40000
Cons ci ratio: 8.969304e-02	ci left: 4.352722e-02	ci right 4.763907e-02	k: 1822	n:40000
KS ci ratio: 3.014385e-02	ci left: 2.926489e-01	ci right 3.016306e-01	k: 11885	n:40000
C1orf74   40000 perm   6 sec   (6235 perm/sec)   p_kst 2.971250e-01   p_cons 4.555000e-02   p_joint 9.070000e-02

Outputting figure to mutsig2_images.part000000000023/C1orf74.2_814_40000_0.29712_0.04555_0.0907.png
                gene_name: C1orf74
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.094 

Current progress: 90 percent done.
C1orf88
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.561827e-02	ci left: 6.916168e-01	ci right 7.096662e-01	k: 7007	n:10000
KS ci ratio: 3.361463e-02	ci left: 5.664436e-01	ci right 5.859120e-01	k: 5762	n:10000
C1orf88   10000 perm   1 sec   (7387 perm/sec)   p_kst 5.762000e-01   p_cons 7.007000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000023/C1orf88.2_600_10000_0.5762_0.7007_1.png
                gene_name: C1orf88
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
C1orf89
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.894111e-02	ci left: 1.899330e-01	ci right 2.056434e-01	k: 1977	n:10000
Cons ci ratio: 1.552890e-01	ci left: 5.523135e-02	ci right 6.462705e-02	k: 598	n:10000
KS ci ratio: 2.395411e-02	ci left: 7.192638e-01	ci right 7.368032e-01	k: 7281	n:10000
C1orf89   10000 perm   1 sec   (7809 perm/sec)   p_kst 7.281000e-01   p_cons 5.980000e-02   p_joint 1.977000e-01

Joint ci ratio: 5.275320e-02	ci left: 2.106105e-01	ci right 2.220721e-01	k: 4326	n:20000
Cons ci ratio: 1.095169e-01	ci left: 5.689394e-02	ci right 6.353464e-02	k: 1203	n:20000
KS ci ratio: 1.715454e-02	ci left: 7.167911e-01	ci right 7.292440e-01	k: 14461	n:20000
C1orf89   20000 perm   3 sec   (6916 perm/sec)   p_kst 7.230500e-01   p_cons 6.015000e-02   p_joint 2.163000e-01

Joint ci ratio: 4.218464e-02	ci left: 2.187631e-01	ci right 2.282238e-01	k: 6704	n:30000
Cons ci ratio: 9.005926e-02	ci left: 5.671872e-02	ci right 6.210033e-02	k: 1781	n:30000
KS ci ratio: 1.403994e-02	ci left: 7.169929e-01	ci right 7.271641e-01	k: 21663	n:30000
C1orf89   30000 perm   5 sec   (6087 perm/sec)   p_kst 7.221000e-01   p_cons 5.936667e-02   p_joint 2.234667e-01

Outputting figure to mutsig2_images.part000000000023/C1orf89.2_797_30000_0.7221_0.059367_0.22347.png
                gene_name: C1orf89
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 94 percent done.
C20orf165
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.909574e-02	ci left: 1.285551e-01	ci right 1.420581e-01	k: 1352	n:10000
Cons ci ratio: 1.089551e-01	ci left: 1.083220e-01	ci right 1.209034e-01	k: 1145	n:10000
KS ci ratio: 4.369047e-02	ci left: 4.361247e-01	ci right 4.557069e-01	k: 4459	n:10000
C20orf165   10000 perm   1 sec   (7662 perm/sec)   p_kst 4.459000e-01   p_cons 1.145000e-01   p_joint 1.352000e-01

Joint ci ratio: 6.099781e-02	ci left: 1.659038e-01	ci right 1.763920e-01	k: 3422	n:20000
Cons ci ratio: 7.787170e-02	ci left: 1.080541e-01	ci right 1.168589e-01	k: 2248	n:20000
KS ci ratio: 3.109734e-02	ci left: 4.357999e-01	ci right 4.496168e-01	k: 8854	n:20000
C20orf165   20000 perm   3 sec   (6701 perm/sec)   p_kst 4.427000e-01   p_cons 1.124000e-01   p_joint 1.711000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf165.2_692_20000_0.4427_0.1124_0.1711.png
                gene_name: C20orf165
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 96 percent done.
C20orf195
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.172305e-02	ci left: 2.216827e-01	ci right 2.382749e-01	k: 2299	n:10000
Cons ci ratio: 8.606556e-02	ci left: 1.643550e-01	ci right 1.792367e-01	k: 1717	n:10000
KS ci ratio: 5.126149e-02	ci left: 3.594324e-01	ci right 3.784440e-01	k: 3689	n:10000
C20orf195   10000 perm   1 sec   (7474 perm/sec)   p_kst 3.689000e-01   p_cons 1.717000e-01   p_joint 2.299000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf195.2_961_10000_0.3689_0.1717_0.2299.png
                gene_name: C20orf195
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 98 percent done.
C20orf197
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.050389e-02	ci left: 6.132157e-01	ci right 6.323128e-01	k: 6228	n:10000
Cons ci ratio: 4.415312e-02	ci left: 4.309378e-01	ci right 4.504967e-01	k: 4407	n:10000
KS ci ratio: 4.157851e-02	ci left: 4.606770e-01	ci right 4.803401e-01	k: 4705	n:10000
C20orf197   10000 perm   1 sec   (7790 perm/sec)   p_kst 4.705000e-01   p_cons 4.407000e-01   p_joint 6.228000e-01

Outputting figure to mutsig2_images.part000000000023/C20orf197.2_389_10000_0.4705_0.4407_0.6228.png
                gene_name: C20orf197
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000023
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 23 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1729>
Subject: Job 9893857: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1729>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000024> was used as the working directory.
Started at Fri Oct  5 23:56:45 2012
Results reported at Sat Oct  6 01:55:39 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000024.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000024.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 24  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000024.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   7059.98 sec.
    Max Memory :      3735 MB
    Max Swap   :      6055 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
24
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 24
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 24: processing genes 2074 - 2164
Calculating significance of each gene.
Using projection method.
2074	C20orf27	1
2075	C20orf29	1
2076	C20orf3	1.294287e-02
2077	C20orf30	3.536813e-01
2078	C20orf4	5.730992e-01
2079	C20orf43	7.284542e-01
2080	C20orf46	6.732638e-01
2081	C20orf54	3.037941e-01
2082	C20orf7	4.947354e-01
2083	C20orf70	1
2084	C20orf71	1.874238e-03
2085	C20orf72	7.927803e-01
2086	C20orf79	4.588428e-01
2087	C20orf85	6.912489e-02
2088	C20orf94	3.059001e-01
2089	C20orf96	2.275224e-01
2090	C21orf2	1
2091	C21orf29	8.891363e-01
2092	C21orf33	1
2093	C21orf45	1
2094	C21orf56	1
2095	C21orf57	1
2096	C21orf58	1
2097	C21orf59	1
2098	C21orf62	5.441722e-01
2099	C21orf63	7.273402e-01
2100	C21orf7	1
2101	C21orf70	1.418495e-01
2102	C21orf91	2.971670e-01
2103	C22orf13	1
2104	C22orf15	1
2105	C22orf23	2.162119e-03
2106	C22orf24	1.437237e-01
2107	C22orf25	2.993549e-01
2108	C22orf28	8.185661e-01
2109	C22orf29	7.991145e-01
2110	C22orf31	7.460982e-01
2111	C22orf32	1
2112	C22orf33	4.455640e-01
2113	C22orf36	1
2114	C22orf39	1
In gene C22orf40 the following bins exceed PROBCAP:
    COAD-AA-3852	categ 6	N = 384     n = 1	mu =   3.62e-07
2115	C22orf40	7.734636e-03
2116	C22orf42	1.245992e-01
2117	C22orf43	6.407329e-02
2118	C22orf9	9.113217e-01
2119	C2CD2	4.279861e-01
2120	C2CD2L	9.535305e-01
2121	C2CD3	6.823716e-01
2122	C2CD4A	1
2123	C2orf15	6.849389e-02
2124	C2orf16	8.867634e-01
2125	C2orf18	4.463650e-02
2126	C2orf24	4.716446e-01
2127	C2orf28	7.082604e-01
2128	C2orf29	9.383749e-01
2129	C2orf3	2.079124e-01
2130	C2orf34	9.015186e-02
2131	C2orf39	6.574953e-01
2132	C2orf40	3.206071e-01
2133	C2orf42	2.012180e-01
2134	C2orf43	7.404492e-01
2135	C2orf44	3.028933e-01
2136	C2orf47	1
2137	C2orf48	1
2138	C2orf49	1.496628e-01
2139	C2orf50	3.544183e-01
2140	C2orf51	5.700406e-01
2141	C2orf53	3.668315e-01
2142	C2orf54	1
2143	C2orf55	9.029460e-01
2144	C2orf56	3.311642e-01
2145	C2orf57	6.954133e-01
2146	C2orf60	7.337078e-01
2147	C2orf61	1
2148	C2orf62	6.226726e-02
2149	C2orf63	3.195193e-01
2150	C2orf64	1
2151	C2orf65	8.980109e-01
2152	C2orf66	3.372135e-01
2153	C2orf67	7.544913e-01
2154	C2orf68	1
2155	C2orf69	8.403016e-02
2156	C2orf7	6.267946e-01
2157	C2orf70	4.523497e-01
2158	C2orf71	6.647700e-01
2159	C2orf73	1
2160	C2orf76	1
2161	C2orf77	4.168161e-01
2162	C2orf78	8.770001e-01
2163	C2orf79	2.076206e-01
2164	C2orf80	2.000946e-01
Done

Running MutSig 2:
Scatter job 24: processing genes 2074 - 2164
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C2orf16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.606556e-02	ci left: 1.643550e-01	ci right 1.792367e-01	k: 1717	n:10000
Cons ci ratio: 1.484236e-01	ci left: 6.034192e-02	ci right 7.011322e-02	k: 651	n:10000
KS ci ratio: 2.152702e-02	ci left: 7.599031e-01	ci right 7.765404e-01	k: 7683	n:10000
C2orf16   10000 perm   2 sec   (4614 perm/sec)   p_kst 7.683000e-01   p_cons 6.510000e-02   p_joint 1.717000e-01

Joint ci ratio: 5.167268e-02	ci left: 2.176429e-01	ci right 2.292376e-01	k: 4468	n:20000
Cons ci ratio: 1.014209e-01	ci left: 6.596456e-02	ci right 7.306121e-02	k: 1389	n:20000
KS ci ratio: 1.535865e-02	ci left: 7.591614e-01	ci right 7.709615e-01	k: 15302	n:20000
C2orf16   20000 perm   7 sec   (2686 perm/sec)   p_kst 7.651000e-01   p_cons 6.945000e-02   p_joint 2.234000e-01

Joint ci ratio: 4.125461e-02	ci left: 2.265380e-01	ci right 2.361140e-01	k: 6939	n:30000
Cons ci ratio: 8.054963e-02	ci left: 7.021196e-02	ci right 7.613768e-02	k: 2194	n:30000
KS ci ratio: 1.285289e-02	ci left: 7.512328e-01	ci right 7.609842e-01	k: 22684	n:30000
C2orf16   30000 perm   10 sec   (2981 perm/sec)   p_kst 7.561333e-01   p_cons 7.313333e-02   p_joint 2.313000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf16.14_5959_30000_0.75613_0.073133_0.2313.png
                gene_name: C2orf16
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 2 percent done.
C2CD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.944842e-02	ci left: 6.296981e-01	ci right 6.486207e-01	k: 6392	n:10000
Cons ci ratio: 9.094428e-03	ci left: 9.445056e-01	ci right 9.532306e-01	k: 9490	n:10000
KS ci ratio: 4.397447e-02	ci left: 4.329326e-01	ci right 4.525008e-01	k: 4427	n:10000
C2CD3   10000 perm   2 sec   (4578 perm/sec)   p_kst 4.427000e-01   p_cons 9.490000e-01   p_joint 6.392000e-01

Outputting figure to mutsig2_images.part000000000024/C2CD3.10_6016_10000_0.4427_0.949_0.6392.png
                gene_name: C2CD3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 5 percent done.
C2orf71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.692423e-02	ci left: 5.199601e-01	ci right 5.396225e-01	k: 5298	n:10000
Cons ci ratio: 6.776877e-02	ci left: 2.421299e-01	ci right 2.592155e-01	k: 2506	n:10000
KS ci ratio: 3.183681e-02	ci left: 5.928296e-01	ci right 6.121107e-01	k: 6025	n:10000
C2orf71   10000 perm   2 sec   (5238 perm/sec)   p_kst 6.025000e-01   p_cons 2.506000e-01   p_joint 5.298000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf71.8_3875_10000_0.6025_0.2506_0.5298.png
                gene_name: C2orf71
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 7 percent done.
C20orf3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.072191e-01	ci left: 1.115436e-01	ci right 1.242799e-01	k: 1178	n:10000
Cons ci ratio: 5.312859e-02	ci left: 3.430310e-01	ci right 3.618550e-01	k: 3524	n:10000
KS ci ratio: 1.651998e-01	ci left: 4.888186e-02	ci right 5.778061e-02	k: 532	n:10000
C20orf3   10000 perm   2 sec   (6466 perm/sec)   p_kst 5.320000e-02   p_cons 3.524000e-01   p_joint 1.178000e-01

Joint ci ratio: 1.070320e-01	ci left: 5.947650e-02	ci right 6.625128e-02	k: 1256	n:20000
Cons ci ratio: 3.738715e-02	ci left: 3.480163e-01	ci right 3.613260e-01	k: 7093	n:20000
KS ci ratio: 1.188317e-01	ci left: 4.852591e-02	ci right 5.470528e-02	k: 1031	n:20000
C20orf3   20000 perm   3 sec   (5791 perm/sec)   p_kst 5.155000e-02   p_cons 3.546500e-01   p_joint 6.280000e-02

Joint ci ratio: 8.830750e-02	ci left: 5.890524e-02	ci right 6.438003e-02	k: 1848	n:30000
Cons ci ratio: 3.075452e-02	ci left: 3.458628e-01	ci right 3.566993e-01	k: 10538	n:30000
KS ci ratio: 9.810019e-02	ci left: 4.804908e-02	ci right 5.303842e-02	k: 1515	n:30000
C20orf3   30000 perm   5 sec   (5483 perm/sec)   p_kst 5.050000e-02   p_cons 3.512667e-01   p_joint 6.160000e-02

Outputting figure to mutsig2_images.part000000000024/C20orf3.6_1287_30000_0.0505_0.35127_0.0616.png
                gene_name: C20orf3
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.064 

Current progress: 9 percent done.
C22orf23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.541574e-02	ci left: 8.592688e-01	ci right 8.727172e-01	k: 8661	n:10000
Cons ci ratio: 3.207657e-02	ci left: 5.892161e-01	ci right 6.085262e-01	k: 5989	n:10000
KS ci ratio: 2.143635e-02	ci left: 7.614214e-01	ci right 7.780212e-01	k: 7698	n:10000
C22orf23   10000 perm   2 sec   (6612 perm/sec)   p_kst 7.698000e-01   p_cons 5.989000e-01   p_joint 8.661000e-01

Outputting figure to mutsig2_images.part000000000024/C22orf23.6_678_10000_0.7698_0.5989_0.8661.png
                gene_name: C22orf23
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 11 percent done.
C2orf39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.386189e-02	ci left: 8.825771e-01	ci right 8.949954e-01	k: 8889	n:10000
Cons ci ratio: 3.153859e-02	ci left: 5.973472e-01	ci right 6.165905e-01	k: 6070	n:10000
KS ci ratio: 2.669787e-02	ci left: 6.738786e-01	ci right 6.922147e-01	k: 6831	n:10000
C2orf39   10000 perm   2 sec   (6084 perm/sec)   p_kst 6.831000e-01   p_cons 6.070000e-01   p_joint 8.889000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf39.6_2291_10000_0.6831_0.607_0.8889.png
                gene_name: C2orf39
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 14 percent done.
C20orf71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.656160e-02	ci left: 4.050199e-01	ci right 4.244298e-01	k: 4147	n:10000
Cons ci ratio: 3.928043e-02	ci left: 4.890517e-01	ci right 5.087489e-01	k: 4989	n:10000
KS ci ratio: 6.074508e-02	ci left: 2.849825e-01	ci right 3.029377e-01	k: 2939	n:10000
C20orf71   10000 perm   1 sec   (6728 perm/sec)   p_kst 2.939000e-01   p_cons 4.989000e-01   p_joint 4.147000e-01

Outputting figure to mutsig2_images.part000000000024/C20orf71.5_793_10000_0.2939_0.4989_0.4147.png
                gene_name: C20orf71
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 16 percent done.
C2orf3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.031728e-02	ci left: 3.680851e-01	ci right 3.871862e-01	k: 3776	n:10000
Cons ci ratio: 2.344045e-02	ci left: 7.278487e-01	ci right 7.452133e-01	k: 7366	n:10000
KS ci ratio: 7.340334e-02	ci left: 2.136891e-01	ci right 2.300732e-01	k: 2218	n:10000
C2orf3   10000 perm   2 sec   (5668 perm/sec)   p_kst 2.218000e-01   p_cons 7.366000e-01   p_joint 3.776000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf3.5_2414_10000_0.2218_0.7366_0.3776.png
                gene_name: C2orf3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 18 percent done.
C20orf54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.492827e-01	ci left: 5.966639e-02	ci right 6.938918e-02	k: 644	n:10000
Cons ci ratio: 1.724980e-02	ci left: 8.304267e-01	ci right 8.449760e-01	k: 8378	n:10000
KS ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
C20orf54   10000 perm   2 sec   (6479 perm/sec)   p_kst 2.450000e-02   p_cons 8.378000e-01   p_joint 6.440000e-02

Joint ci ratio: 1.145634e-01	ci left: 5.212349e-02	ci right 5.850656e-02	k: 1105	n:20000
Cons ci ratio: 1.258065e-02	ci left: 8.239116e-01	ci right 8.343925e-01	k: 16584	n:20000
KS ci ratio: 1.696499e-01	ci left: 2.379073e-02	ci right 2.824852e-02	k: 519	n:20000
C20orf54   20000 perm   3 sec   (5947 perm/sec)   p_kst 2.595000e-02   p_cons 8.292000e-01   p_joint 5.525000e-02

Joint ci ratio: 9.117969e-02	ci left: 5.538123e-02	ci right 6.070477e-02	k: 1740	n:30000
Cons ci ratio: 1.028400e-02	ci left: 8.245564e-01	ci right 8.331132e-01	k: 24866	n:30000
KS ci ratio: 1.388857e-01	ci left: 2.406758e-02	ci right 2.769170e-02	k: 775	n:30000
C20orf54   30000 perm   5 sec   (5719 perm/sec)   p_kst 2.583333e-02   p_cons 8.288667e-01   p_joint 5.800000e-02

Joint ci ratio: 8.918167e-02	ci left: 4.401654e-02	ci right 4.814968e-02	k: 1842	n:40000
Cons ci ratio: 8.924714e-03	ci left: 8.245428e-01	ci right 8.319595e-01	k: 33131	n:40000
KS ci ratio: 1.215308e-01	ci left: 2.380738e-02	ci right 2.691205e-02	k: 1013	n:40000
C20orf54   40000 perm   7 sec   (5350 perm/sec)   p_kst 2.532500e-02   p_cons 8.282750e-01   p_joint 4.605000e-02

Joint ci ratio: 7.657553e-02	ci left: 4.788983e-02	ci right 5.172265e-02	k: 2489	n:50000
Cons ci ratio: 7.945271e-03	ci left: 8.262753e-01	ci right 8.328864e-01	k: 41480	n:50000
KS ci ratio: 1.083286e-01	ci left: 2.413587e-02	ci right 2.691959e-02	k: 1275	n:50000
C20orf54   50000 perm   10 sec   (5261 perm/sec)   p_kst 2.550000e-02   p_cons 8.296000e-01   p_joint 4.978000e-02

Joint ci ratio: 6.860853e-02	ci left: 4.982691e-02	ci right 5.338328e-02	k: 3095	n:60000
Cons ci ratio: 7.275634e-03	ci left: 8.256778e-01	ci right 8.317237e-01	k: 49723	n:60000
KS ci ratio: 9.866558e-02	ci left: 2.436717e-02	ci right 2.691233e-02	k: 1537	n:60000
C20orf54   60000 perm   12 sec   (5191 perm/sec)   p_kst 2.561667e-02   p_cons 8.287167e-01   p_joint 5.158333e-02

Outputting figure to mutsig2_images.part000000000024/C20orf54.4_1426_60000_0.025617_0.82872_0.051583.png
                gene_name: C20orf54
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.053 

Current progress: 20 percent done.
C2CD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.125939e-01	ci left: 1.019814e-01	ci right 1.142479e-01	k: 1080	n:10000
Cons ci ratio: 1.895761e-01	ci left: 3.710237e-02	ci right 4.496786e-02	k: 409	n:10000
KS ci ratio: 7.523615e-02	ci left: 2.054042e-01	ci right 2.215630e-01	k: 2134	n:10000
C2CD2   10000 perm   2 sec   (6369 perm/sec)   p_kst 2.134000e-01   p_cons 4.090000e-02   p_joint 1.080000e-01

Joint ci ratio: 7.779378e-02	ci left: 1.082507e-01	ci right 1.170623e-01	k: 2252	n:20000
Cons ci ratio: 1.357013e-01	ci left: 3.732625e-02	ci right 4.280850e-02	k: 800	n:20000
KS ci ratio: 5.398919e-02	ci left: 2.029371e-01	ci right 2.142477e-01	k: 4171	n:20000
C2CD2   20000 perm   3 sec   (5827 perm/sec)   p_kst 2.085500e-01   p_cons 4.000000e-02   p_joint 1.126000e-01

Joint ci ratio: 5.845278e-02	ci left: 1.265429e-01	ci right 1.341955e-01	k: 3910	n:30000
Cons ci ratio: 1.092700e-01	ci left: 3.888143e-02	ci right 4.340798e-02	k: 1233	n:30000
KS ci ratio: 4.403327e-02	ci left: 2.043446e-01	ci right 2.135785e-01	k: 6268	n:30000
C2CD2   30000 perm   5 sec   (5570 perm/sec)   p_kst 2.089333e-01   p_cons 4.110000e-02   p_joint 1.303333e-01

Joint ci ratio: 7.730443e-02	ci left: 5.806035e-02	ci right 6.275372e-02	k: 2415	n:40000
Cons ci ratio: 9.407579e-02	ci left: 3.963964e-02	ci right 4.357726e-02	k: 1663	n:40000
KS ci ratio: 3.802954e-02	ci left: 2.058682e-01	ci right 2.138740e-01	k: 8394	n:40000
C2CD2   40000 perm   8 sec   (5045 perm/sec)   p_kst 2.098500e-01   p_cons 4.157500e-02   p_joint 6.037500e-02

Outputting figure to mutsig2_images.part000000000024/C2CD2.4_2147_40000_0.20985_0.041575_0.060375.png
                gene_name: C2CD2
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.063 

Current progress: 23 percent done.
C2orf18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.134967e-02	ci left: 1.483504e-01	ci right 1.626509e-01	k: 1554	n:10000
Cons ci ratio: 2.408683e-01	ci left: 2.268733e-02	ci right 2.899301e-02	k: 257	n:10000
KS ci ratio: 3.191661e-02	ci left: 5.916250e-01	ci right 6.109159e-01	k: 6013	n:10000
C2orf18   10000 perm   1 sec   (6965 perm/sec)   p_kst 6.013000e-01   p_cons 2.570000e-02   p_joint 1.554000e-01

Joint ci ratio: 8.428246e-02	ci left: 9.347166e-02	ci right 1.017457e-01	k: 1951	n:20000
Cons ci ratio: 1.970633e-01	ci left: 1.748601e-02	ci right 2.135550e-02	k: 387	n:20000
KS ci ratio: 2.283891e-02	ci left: 5.887598e-01	ci right 6.024124e-01	k: 11912	n:20000
C2orf18   20000 perm   3 sec   (5806 perm/sec)   p_kst 5.956000e-01   p_cons 1.935000e-02   p_joint 9.755000e-02

Joint ci ratio: 6.633405e-02	ci left: 1.007974e-01	ci right 1.077461e-01	k: 3127	n:30000
Cons ci ratio: 1.584224e-01	ci left: 1.841369e-02	ci right 2.161355e-02	k: 599	n:30000
KS ci ratio: 1.861857e-02	ci left: 5.907890e-01	ci right 6.019256e-01	k: 17891	n:30000
C2orf18   30000 perm   5 sec   (5660 perm/sec)   p_kst 5.963667e-01   p_cons 1.996667e-02   p_joint 1.042333e-01

Joint ci ratio: 4.616913e-02	ci left: 1.491631e-01	ci right 1.562374e-01	k: 6107	n:40000
Cons ci ratio: 1.393465e-01	ci left: 1.804668e-02	ci right 2.077372e-02	k: 775	n:40000
KS ci ratio: 1.605128e-02	ci left: 5.937267e-01	ci right 6.033590e-01	k: 23942	n:40000
C2orf18   40000 perm   7 sec   (5531 perm/sec)   p_kst 5.985500e-01   p_cons 1.937500e-02   p_joint 1.526750e-01

Joint ci ratio: 4.273843e-02	ci left: 1.409333e-01	ci right 1.471080e-01	k: 7200	n:50000
Cons ci ratio: 1.255628e-01	ci left: 1.791823e-02	ci right 2.033806e-02	k: 955	n:50000
KS ci ratio: 1.435409e-02	ci left: 5.943279e-01	ci right 6.029407e-01	k: 29932	n:50000
C2orf18   50000 perm   9 sec   (5418 perm/sec)   p_kst 5.986400e-01   p_cons 1.910000e-02   p_joint 1.440000e-01

Joint ci ratio: 3.932681e-02	ci left: 1.392657e-01	ci right 1.448690e-01	k: 8523	n:60000
Cons ci ratio: 1.148373e-01	ci left: 1.795497e-02	ci right 2.015857e-02	k: 1142	n:60000
KS ci ratio: 1.311867e-02	ci left: 5.941473e-01	ci right 6.020099e-01	k: 35885	n:60000
C2orf18   60000 perm   11 sec   (5313 perm/sec)   p_kst 5.980833e-01   p_cons 1.903333e-02   p_joint 1.420500e-01

Joint ci ratio: 3.816965e-02	ci left: 1.284379e-01	ci right 1.334499e-01	k: 9165	n:70000
Cons ci ratio: 9.635032e-02	ci left: 2.198588e-02	ci right 2.422533e-02	k: 1616	n:70000
KS ci ratio: 1.215488e-02	ci left: 5.940706e-01	ci right 6.013499e-01	k: 41840	n:70000
C2orf18   70000 perm   13 sec   (5216 perm/sec)   p_kst 5.977143e-01   p_cons 2.308571e-02   p_joint 1.309286e-01

Outputting figure to mutsig2_images.part000000000024/C2orf18.4_1140_70000_0.59771_0.023086_0.13093.png
                gene_name: C2orf18
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 25 percent done.
C2orf42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.375114e-02	ci left: 3.377653e-01	ci right 3.565238e-01	k: 3471	n:10000
Cons ci ratio: 8.546557e-02	ci left: 1.663205e-01	ci right 1.812701e-01	k: 1737	n:10000
KS ci ratio: 5.317518e-02	ci left: 3.426336e-01	ci right 3.614527e-01	k: 3520	n:10000
C2orf42   10000 perm   2 sec   (6543 perm/sec)   p_kst 3.520000e-01   p_cons 1.737000e-01   p_joint 3.471000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf42.4_1757_10000_0.352_0.1737_0.3471.png
                gene_name: C2orf42
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 27 percent done.
C2orf44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 7.731236e-02	ci left: 1.965332e-01	ci right 2.124394e-01	k: 2044	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
C2orf44   10000 perm   2 sec   (6416 perm/sec)   p_kst 2.000000e-04   p_cons 2.044000e-01   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 5.515225e-02	ci left: 1.960585e-01	ci right 2.072284e-01	k: 4032	n:20000
KS ci ratio: 1.959755e+00	ci left: 3.093467e-05	ci right 4.383005e-04	k: 3	n:20000
C2orf44   20000 perm   3 sec   (5754 perm/sec)   p_kst 1.500000e-04   p_cons 2.016000e-01   p_joint 0

Joint ci ratio: 4.296732e-01	ci left: 2.174473e-03	ci right 3.391668e-03	k: 82	n:30000
Cons ci ratio: 4.518389e-02	ci left: 1.960150e-01	ci right 2.051098e-01	k: 6016	n:30000
KS ci ratio: 1.181688e+00	ci left: 1.598575e-04	ci right 6.129261e-04	k: 10	n:30000
C2orf44   30000 perm   5 sec   (5504 perm/sec)   p_kst 3.333333e-04   p_cons 2.005333e-01   p_joint 2.733333e-03

Joint ci ratio: 4.038368e-01	ci left: 1.876973e-03	ci right 2.847537e-03	k: 93	n:40000
Cons ci ratio: 3.899272e-02	ci left: 1.977521e-01	ci right 2.056413e-01	k: 8067	n:40000
KS ci ratio: 1.131423e+00	ci left: 1.372867e-04	ci right 4.919976e-04	k: 11	n:40000
C2orf44   40000 perm   7 sec   (5335 perm/sec)   p_kst 2.750000e-04   p_cons 2.016750e-01   p_joint 2.325000e-03

Joint ci ratio: 3.839838e-01	ci left: 1.681740e-03	ci right 2.497801e-03	k: 103	n:50000
Cons ci ratio: 3.482213e-02	ci left: 1.986670e-01	ci right 2.057276e-01	k: 10109	n:50000
KS ci ratio: 1.087060e+00	ci left: 1.240175e-04	ci right 4.191941e-04	k: 12	n:50000
C2orf44   50000 perm   10 sec   (5190 perm/sec)   p_kst 2.400000e-04   p_cons 2.021800e-01   p_joint 2.060000e-03

Joint ci ratio: 4.106125e-01	ci left: 1.206344e-03	ci right 1.843438e-03	k: 90	n:60000
Cons ci ratio: 3.174060e-02	ci left: 1.994563e-01	ci right 2.059058e-01	k: 12160	n:60000
KS ci ratio: 1.047533e+00	ci left: 1.153708e-04	ci right 3.704781e-04	k: 13	n:60000
C2orf44   60000 perm   12 sec   (5085 perm/sec)   p_kst 2.166667e-04   p_cons 2.026667e-01   p_joint 1.500000e-03

Joint ci ratio: 3.717722e-01	ci left: 1.291695e-03	ci right 1.893691e-03	k: 110	n:70000
Cons ci ratio: 2.919630e-02	ci left: 2.017872e-01	ci right 2.077802e-01	k: 14334	n:70000
KS ci ratio: 9.506174e-01	ci left: 1.306538e-04	ci right 3.711592e-04	k: 16	n:70000
C2orf44   70000 perm   14 sec   (4977 perm/sec)   p_kst 2.285714e-04   p_cons 2.047714e-01   p_joint 1.571429e-03

Joint ci ratio: 3.448562e-01	ci left: 1.335010e-03	ci right 1.902117e-03	k: 128	n:80000
Cons ci ratio: 2.736302e-02	ci left: 2.013614e-01	ci right 2.069601e-01	k: 16332	n:80000
KS ci ratio: 9.238431e-01	ci left: 1.237938e-04	ci right 3.402114e-04	k: 17	n:80000
C2orf44   80000 perm   16 sec   (4875 perm/sec)   p_kst 2.125000e-04   p_cons 2.041500e-01   p_joint 1.600000e-03

Joint ci ratio: 3.264034e-01	ci left: 1.339307e-03	ci right 1.871423e-03	k: 143	n:90000
Cons ci ratio: 2.577927e-02	ci left: 2.017583e-01	ci right 2.070385e-01	k: 18395	n:90000
KS ci ratio: 8.553096e-01	ci left: 1.357442e-04	ci right 3.431834e-04	k: 20	n:90000
C2orf44   90000 perm   19 sec   (4780 perm/sec)   p_kst 2.222222e-04   p_cons 2.043889e-01   p_joint 1.588889e-03

Joint ci ratio: 3.187625e-01	ci left: 1.269702e-03	ci right 1.759943e-03	k: 150	n:100000
Cons ci ratio: 2.445411e-02	ci left: 2.019241e-01	ci right 2.069330e-01	k: 20442	n:100000
KS ci ratio: 8.172784e-01	ci left: 1.378778e-04	ci right 3.330638e-04	k: 22	n:100000
C2orf44   100000 perm   21 sec   (4699 perm/sec)   p_kst 2.200000e-04   p_cons 2.044200e-01   p_joint 1.500000e-03

Joint ci ratio: 3.106501e-01	ci left: 1.221253e-03	ci right 1.678409e-03	k: 158	n:110000
Cons ci ratio: 2.328765e-02	ci left: 2.024365e-01	ci right 2.072154e-01	k: 22530	n:110000
KS ci ratio: 7.278265e-01	ci left: 1.691501e-04	ci right 3.678682e-04	k: 28	n:110000
C2orf44   110000 perm   24 sec   (4615 perm/sec)   p_kst 2.545455e-04   p_cons 2.048182e-01   p_joint 1.436364e-03

Joint ci ratio: 3.518430e-01	ci left: 8.519454e-04	ci right 1.222849e-03	k: 123	n:120000
Cons ci ratio: 2.230152e-02	ci left: 2.024616e-01	ci right 2.070360e-01	k: 24569	n:120000
KS ci ratio: 6.358046e-01	ci left: 2.171041e-04	ci right 4.249721e-04	k: 37	n:120000
C2orf44   120000 perm   26 sec   (4533 perm/sec)   p_kst 3.083333e-04   p_cons 2.047417e-01   p_joint 1.025000e-03

Joint ci ratio: 3.463104e-01	ci left: 8.144798e-04	ci right 1.162245e-03	k: 127	n:130000
Cons ci ratio: 2.146134e-02	ci left: 2.020268e-01	ci right 2.064172e-01	k: 26548	n:130000
KS ci ratio: 6.358126e-01	ci left: 2.004032e-04	ci right 3.922837e-04	k: 37	n:130000
C2orf44   130000 perm   29 sec   (4461 perm/sec)   p_kst 2.846154e-04   p_cons 2.042154e-01   p_joint 9.769231e-04

Joint ci ratio: 3.653904e-01	ci left: 6.717308e-04	ci right 9.781257e-04	k: 114	n:140000
Cons ci ratio: 2.065853e-02	ci left: 2.024538e-01	ci right 2.066870e-01	k: 28639	n:140000
KS ci ratio: 6.047762e-01	ci left: 2.101673e-04	ci right 3.972730e-04	k: 41	n:140000
C2orf44   140000 perm   32 sec   (4379 perm/sec)   p_kst 2.928571e-04   p_cons 2.045643e-01   p_joint 8.142857e-04

Joint ci ratio: 3.533084e-01	ci left: 6.754685e-04	ci right 9.710445e-04	k: 122	n:150000
Cons ci ratio: 1.995547e-02	ci left: 2.025675e-01	ci right 2.066572e-01	k: 30691	n:150000
KS ci ratio: 5.778819e-01	ci left: 2.188302e-04	ci right 4.014032e-04	k: 45	n:150000
C2orf44   150000 perm   35 sec   (4315 perm/sec)   p_kst 3.000000e-04   p_cons 2.046067e-01   p_joint 8.133333e-04

Joint ci ratio: 3.770737e-01	ci left: 5.480881e-04	ci right 8.080596e-04	k: 107	n:160000
Cons ci ratio: 1.931184e-02	ci left: 2.027999e-01	ci right 2.067608e-01	k: 32764	n:160000
KS ci ratio: 5.599125e-01	ci left: 2.212043e-04	ci right 3.977370e-04	k: 48	n:160000
C2orf44   160000 perm   38 sec   (4250 perm/sec)   p_kst 3.000000e-04   p_cons 2.047750e-01   p_joint 6.687500e-04

Joint ci ratio: 4.301696e-01	ci left: 3.836474e-04	ci right 5.986923e-04	k: 82	n:170000
Cons ci ratio: 1.871253e-02	ci left: 2.032531e-01	ci right 2.070982e-01	k: 34879	n:170000
KS ci ratio: 5.383679e-01	ci left: 2.284557e-04	ci right 4.011049e-04	k: 52	n:170000
C2orf44   170000 perm   41 sec   (4195 perm/sec)   p_kst 3.058824e-04   p_cons 2.051706e-01   p_joint 4.823529e-04

Joint ci ratio: 4.154153e-01	ci left: 3.921211e-04	ci right 6.022906e-04	k: 88	n:180000
Cons ci ratio: 1.820354e-02	ci left: 2.029820e-01	ci right 2.067164e-01	k: 36872	n:180000
KS ci ratio: 5.383726e-01	ci left: 2.157633e-04	ci right 3.788223e-04	k: 52	n:180000
C2orf44   180000 perm   44 sec   (4135 perm/sec)   p_kst 2.888889e-04   p_cons 2.048444e-01   p_joint 4.888889e-04

Joint ci ratio: 2.210349e-01	ci left: 1.470028e-03	ci right 1.840180e-03	k: 313	n:190000
Cons ci ratio: 1.733028e-02	ci left: 2.103109e-01	ci right 2.139927e-01	k: 40308	n:190000
KS ci ratio: 5.284948e-01	ci left: 2.135147e-04	ci right 3.708170e-04	k: 54	n:190000
C2orf44   190000 perm   47 sec   (4079 perm/sec)   p_kst 2.842105e-04   p_cons 2.121474e-01   p_joint 1.647368e-03

Joint ci ratio: 2.172652e-01	ci left: 1.448506e-03	ci right 1.806187e-03	k: 324	n:200000
Cons ci ratio: 1.690298e-02	ci left: 2.101306e-01	ci right 2.137177e-01	k: 42384	n:200000
KS ci ratio: 5.146453e-01	ci left: 2.158631e-04	ci right 3.692350e-04	k: 57	n:200000
C2orf44   200000 perm   50 sec   (4024 perm/sec)   p_kst 2.850000e-04   p_cons 2.119200e-01   p_joint 1.620000e-03

Joint ci ratio: 2.169396e-01	ci left: 1.384028e-03	ci right 1.725206e-03	k: 325	n:210000
Cons ci ratio: 1.648792e-02	ci left: 2.103294e-01	ci right 2.138309e-01	k: 44536	n:210000
KS ci ratio: 5.018305e-01	ci left: 2.180370e-04	ci right 3.677558e-04	k: 60	n:210000
C2orf44   210000 perm   53 sec   (3969 perm/sec)   p_kst 2.857143e-04   p_cons 2.120762e-01   p_joint 1.547619e-03

Joint ci ratio: 2.124270e-01	ci left: 1.381332e-03	ci right 1.713841e-03	k: 339	n:220000
Cons ci ratio: 1.611998e-02	ci left: 2.101395e-01	ci right 2.135590e-01	k: 46606	n:220000
KS ci ratio: 4.899276e-01	ci left: 2.200565e-04	ci right 3.663688e-04	k: 63	n:220000
C2orf44   220000 perm   57 sec   (3892 perm/sec)   p_kst 2.863636e-04   p_cons 2.118455e-01   p_joint 1.540909e-03

Joint ci ratio: 2.064399e-01	ci left: 1.403673e-03	ci right 1.730834e-03	k: 359	n:230000
Cons ci ratio: 1.577479e-02	ci left: 2.099843e-01	ci right 2.133274e-01	k: 48680	n:230000
KS ci ratio: 4.788334e-01	ci left: 2.219389e-04	ci right 3.650648e-04	k: 66	n:230000
C2orf44   230000 perm   60 sec   (3839 perm/sec)   p_kst 2.869565e-04   p_cons 2.116522e-01   p_joint 1.560870e-03

Joint ci ratio: 2.011974e-01	ci left: 1.420314e-03	ci right 1.741915e-03	k: 378	n:240000
Cons ci ratio: 1.544971e-02	ci left: 2.098676e-01	ci right 2.131394e-01	k: 50760	n:240000
KS ci ratio: 4.684603e-01	ci left: 2.236988e-04	ci right 3.638358e-04	k: 69	n:240000
C2orf44   240000 perm   63 sec   (3791 perm/sec)   p_kst 2.875000e-04   p_cons 2.115000e-01   p_joint 1.575000e-03

Joint ci ratio: 1.983416e-01	ci left: 1.405300e-03	ci right 1.718438e-03	k: 389	n:250000
Cons ci ratio: 1.513684e-02	ci left: 2.099165e-01	ci right 2.131222e-01	k: 52879	n:250000
KS ci ratio: 4.525738e-01	ci left: 2.324306e-04	ci right 3.715868e-04	k: 74	n:250000
C2orf44   250000 perm   67 sec   (3743 perm/sec)   p_kst 2.960000e-04   p_cons 2.115160e-01   p_joint 1.556000e-03

Joint ci ratio: 2.163088e-01	ci left: 1.125127e-03	ci right 1.401568e-03	k: 327	n:260000
Cons ci ratio: 1.484704e-02	ci left: 2.098549e-01	ci right 2.129977e-01	k: 54970	n:260000
KS ci ratio: 4.409666e-01	ci left: 2.371445e-04	ci right 3.743996e-04	k: 78	n:260000
C2orf44   260000 perm   70 sec   (3697 perm/sec)   p_kst 3.000000e-04   p_cons 2.114231e-01   p_joint 1.257692e-03

Joint ci ratio: 2.196928e-01	ci left: 1.048436e-03	ci right 1.310608e-03	k: 317	n:270000
Cons ci ratio: 1.456663e-02	ci left: 2.099498e-01	ci right 2.130342e-01	k: 57102	n:270000
KS ci ratio: 4.328250e-01	ci left: 2.382502e-04	ci right 3.728590e-04	k: 81	n:270000
C2orf44   270000 perm   74 sec   (3655 perm/sec)   p_kst 3.000000e-04   p_cons 2.114889e-01   p_joint 1.174074e-03

Joint ci ratio: 2.243359e-01	ci left: 9.671401e-04	ci right 1.214801e-03	k: 304	n:280000
Cons ci ratio: 1.430797e-02	ci left: 2.098889e-01	ci right 2.129171e-01	k: 59192	n:280000
KS ci ratio: 4.276421e-01	ci left: 2.361104e-04	ci right 3.674548e-04	k: 83	n:280000
C2orf44   280000 perm   78 sec   (3602 perm/sec)   p_kst 2.964286e-04   p_cons 2.114000e-01   p_joint 1.085714e-03

Joint ci ratio: 2.345709e-01	ci left: 8.492798e-04	ci right 1.078123e-03	k: 278	n:290000
Cons ci ratio: 1.405854e-02	ci left: 2.099289e-01	ci right 2.129045e-01	k: 61310	n:290000
KS ci ratio: 4.226411e-01	ci left: 2.341271e-04	ci right 3.624144e-04	k: 85	n:290000
C2orf44   290000 perm   82 sec   (3555 perm/sec)   p_kst 2.931034e-04   p_cons 2.114138e-01   p_joint 9.586207e-04

Joint ci ratio: 2.159977e-01	ci left: 9.782546e-04	ci right 1.218217e-03	k: 328	n:300000
Cons ci ratio: 1.382254e-02	ci left: 2.099467e-01	ci right 2.128722e-01	k: 63422	n:300000
KS ci ratio: 4.202065e-01	ci left: 2.293025e-04	ci right 3.540191e-04	k: 86	n:300000
C2orf44   300000 perm   85 sec   (3511 perm/sec)   p_kst 2.866667e-04   p_cons 2.114067e-01   p_joint 1.093333e-03

Joint ci ratio: 2.228895e-01	ci left: 8.857221e-04	ci right 1.110871e-03	k: 308	n:310000
Cons ci ratio: 1.359923e-02	ci left: 2.099348e-01	ci right 2.128125e-01	k: 65525	n:310000
KS ci ratio: 4.202085e-01	ci left: 2.219055e-04	ci right 3.425995e-04	k: 86	n:310000
C2orf44   310000 perm   89 sec   (3471 perm/sec)   p_kst 2.774194e-04   p_cons 2.113710e-01   p_joint 9.935484e-04

Joint ci ratio: 2.225328e-01	ci left: 8.609927e-04	ci right 1.079457e-03	k: 309	n:320000
Cons ci ratio: 1.338189e-02	ci left: 2.100363e-01	ci right 2.128690e-01	k: 67664	n:320000
KS ci ratio: 4.154607e-01	ci left: 2.205637e-04	ci right 3.387969e-04	k: 88	n:320000
C2orf44   320000 perm   93 sec   (3430 perm/sec)   p_kst 2.750000e-04   p_cons 2.114500e-01   p_joint 9.656250e-04

Joint ci ratio: 2.183461e-01	ci left: 8.692585e-04	ci right 1.085114e-03	k: 321	n:330000
Cons ci ratio: 1.318039e-02	ci left: 2.099868e-01	ci right 2.127759e-01	k: 69755	n:330000
KS ci ratio: 4.000245e-01	ci left: 2.329172e-04	ci right 3.519056e-04	k: 95	n:330000
C2orf44   330000 perm   98 sec   (3383 perm/sec)   p_kst 2.878788e-04   p_cons 2.113788e-01   p_joint 9.727273e-04

Joint ci ratio: 2.153575e-01	ci left: 8.687250e-04	ci right 1.081105e-03	k: 330	n:340000
Cons ci ratio: 1.299025e-02	ci left: 2.098760e-01	ci right 2.126231e-01	k: 71824	n:340000
KS ci ratio: 3.919418e-01	ci left: 2.366600e-04	ci right 3.544857e-04	k: 99	n:340000
C2orf44   340000 perm   102 sec   (3343 perm/sec)   p_kst 2.911765e-04   p_cons 2.112471e-01   p_joint 9.705882e-04

Joint ci ratio: 2.137506e-01	ci left: 8.574219e-04	ci right 1.065269e-03	k: 335	n:350000
Cons ci ratio: 1.280844e-02	ci left: 2.097632e-01	ci right 2.124701e-01	k: 73890	n:350000
KS ci ratio: 3.899977e-01	ci left: 2.324744e-04	ci right 3.474944e-04	k: 100	n:350000
C2orf44   350000 perm   106 sec   (3305 perm/sec)   p_kst 2.857143e-04   p_cons 2.111143e-01   p_joint 9.571429e-04

Joint ci ratio: 2.163469e-01	ci left: 8.125771e-04	ci right 1.012264e-03	k: 327	n:360000
Cons ci ratio: 1.263005e-02	ci left: 2.097623e-01	ci right 2.124312e-01	k: 75994	n:360000
KS ci ratio: 3.861933e-01	ci left: 2.310302e-04	ci right 3.439369e-04	k: 102	n:360000
C2orf44   360000 perm   110 sec   (3269 perm/sec)   p_kst 2.833333e-04   p_cons 2.110944e-01   p_joint 9.083333e-04

Joint ci ratio: 2.341758e-01	ci left: 6.681882e-04	ci right 8.478875e-04	k: 279	n:370000
Cons ci ratio: 1.246042e-02	ci left: 2.097213e-01	ci right 2.123535e-01	k: 78083	n:370000
KS ci ratio: 3.806890e-01	ci left: 2.321127e-04	ci right 3.435273e-04	k: 105	n:370000
C2orf44   370000 perm   114 sec   (3232 perm/sec)   p_kst 2.837838e-04   p_cons 2.110351e-01   p_joint 7.540541e-04

Joint ci ratio: 2.341782e-01	ci left: 6.506036e-04	ci right 8.255757e-04	k: 279	n:380000
Cons ci ratio: 1.229095e-02	ci left: 2.098585e-01	ci right 2.124564e-01	k: 80239	n:380000
KS ci ratio: 3.771481e-01	ci left: 2.307663e-04	ci right 3.402494e-04	k: 107	n:380000
C2orf44   380000 perm   119 sec   (3198 perm/sec)   p_kst 2.815789e-04   p_cons 2.111553e-01   p_joint 7.342105e-04

Joint ci ratio: 2.313048e-01	ci left: 6.508237e-04	ci right 8.234005e-04	k: 286	n:390000
Cons ci ratio: 1.212951e-02	ci left: 2.099531e-01	ci right 2.125178e-01	k: 82381	n:390000
KS ci ratio: 3.737041e-01	ci left: 2.294935e-04	ci right 3.371350e-04	k: 109	n:390000
C2orf44   390000 perm   123 sec   (3164 perm/sec)   p_kst 2.794872e-04   p_cons 2.112333e-01   p_joint 7.333333e-04

Joint ci ratio: 2.354481e-01	ci left: 6.110131e-04	ci right 7.763587e-04	k: 276	n:400000
Cons ci ratio: 1.197696e-02	ci left: 2.099684e-01	ci right 2.125008e-01	k: 84493	n:400000
KS ci ratio: 3.687100e-01	ci left: 2.305565e-04	ci right 3.369032e-04	k: 112	n:400000
C2orf44   400000 perm   128 sec   (3133 perm/sec)   p_kst 2.800000e-04   p_cons 2.112325e-01   p_joint 6.900000e-04

Joint ci ratio: 2.329391e-01	ci left: 6.098858e-04	ci right 7.729144e-04	k: 282	n:410000
Cons ci ratio: 1.182942e-02	ci left: 2.100001e-01	ci right 2.125015e-01	k: 86612	n:410000
KS ci ratio: 3.670901e-01	ci left: 2.271467e-04	ci right 3.313497e-04	k: 113	n:410000
C2orf44   410000 perm   132 sec   (3102 perm/sec)   p_kst 2.756098e-04   p_cons 2.112488e-01   p_joint 6.878049e-04

Joint ci ratio: 2.313109e-01	ci left: 6.043345e-04	ci right 7.645886e-04	k: 286	n:420000
Cons ci ratio: 1.168771e-02	ci left: 2.100163e-01	ci right 2.124877e-01	k: 88725	n:420000
KS ci ratio: 3.670914e-01	ci left: 2.217383e-04	ci right 3.234606e-04	k: 113	n:420000
C2orf44   420000 perm   137 sec   (3070 perm/sec)   p_kst 2.690476e-04   p_cons 2.112500e-01   p_joint 6.809524e-04

Joint ci ratio: 2.270005e-01	ci left: 6.143936e-04	ci right 7.738543e-04	k: 297	n:430000
Cons ci ratio: 1.155274e-02	ci left: 2.099808e-01	ci right 2.124231e-01	k: 90816	n:430000
KS ci ratio: 3.592957e-01	ci left: 2.271486e-04	ci right 3.286225e-04	k: 118	n:430000
C2orf44   430000 perm   142 sec   (3038 perm/sec)   p_kst 2.744186e-04   p_cons 2.112000e-01   p_joint 6.906977e-04

Joint ci ratio: 2.297182e-01	ci left: 5.854301e-04	ci right 7.394506e-04	k: 290	n:440000
Cons ci ratio: 1.141946e-02	ci left: 2.100310e-01	ci right 2.124455e-01	k: 92944	n:440000
KS ci ratio: 3.534047e-01	ci left: 2.302634e-04	ci right 3.310551e-04	k: 122	n:440000
C2orf44   440000 perm   146 sec   (3008 perm/sec)   p_kst 2.772727e-04   p_cons 2.112364e-01   p_joint 6.590909e-04

Joint ci ratio: 2.273861e-01	ci left: 5.849905e-04	ci right 7.371138e-04	k: 296	n:450000
Cons ci ratio: 1.129220e-02	ci left: 2.100348e-01	ci right 2.124222e-01	k: 95052	n:450000
KS ci ratio: 3.477943e-01	ci left: 2.332527e-04	ci right 3.333668e-04	k: 126	n:450000
C2orf44   450000 perm   151 sec   (2978 perm/sec)   p_kst 2.800000e-04   p_cons 2.112267e-01   p_joint 6.577778e-04

Joint ci ratio: 2.281578e-01	ci left: 5.681729e-04	ci right 7.164949e-04	k: 294	n:460000
Cons ci ratio: 1.117281e-02	ci left: 2.099279e-01	ci right 2.122887e-01	k: 97109	n:460000
KS ci ratio: 3.360872e-01	ci left: 2.460680e-04	ci right 3.473577e-04	k: 135	n:460000
C2orf44   460000 perm   156 sec   (2948 perm/sec)   p_kst 2.934783e-04   p_cons 2.111065e-01   p_joint 6.391304e-04

Joint ci ratio: 2.281593e-01	ci left: 5.560838e-04	ci right 7.012509e-04	k: 294	n:470000
Cons ci ratio: 1.105402e-02	ci left: 2.099192e-01	ci right 2.122546e-01	k: 99210	n:470000
KS ci ratio: 3.336432e-01	ci left: 2.447300e-04	ci right 3.445789e-04	k: 137	n:470000
C2orf44   470000 perm   161 sec   (2918 perm/sec)   p_kst 2.914894e-04   p_cons 2.110851e-01   p_joint 6.255319e-04

Joint ci ratio: 2.258740e-01	ci left: 5.562879e-04	ci right 6.998511e-04	k: 300	n:480000
Cons ci ratio: 1.093813e-02	ci left: 2.099358e-01	ci right 2.122468e-01	k: 101323	n:480000
KS ci ratio: 3.324416e-01	ci left: 2.415405e-04	ci right 3.396572e-04	k: 138	n:480000
C2orf44   480000 perm   166 sec   (2885 perm/sec)   p_kst 2.875000e-04   p_cons 2.110896e-01   p_joint 6.250000e-04

Joint ci ratio: 2.297260e-01	ci left: 5.256904e-04	ci right 6.639991e-04	k: 290	n:490000
Cons ci ratio: 1.082965e-02	ci left: 2.098338e-01	ci right 2.121206e-01	k: 103378	n:490000
KS ci ratio: 3.519815e-01	ci left: 2.086267e-04	ci right 2.994956e-04	k: 123	n:490000
C2orf44   490000 perm   172 sec   (2848 perm/sec)   p_kst 2.510204e-04   p_cons 2.109755e-01   p_joint 5.918367e-04

Joint ci ratio: 2.293334e-01	ci left: 5.170613e-04	ci right 6.528344e-04	k: 291	n:500000
Cons ci ratio: 1.071667e-02	ci left: 2.099735e-01	ci right 2.122378e-01	k: 105552	n:500000
KS ci ratio: 3.519824e-01	ci left: 2.044541e-04	ci right 2.935059e-04	k: 123	n:500000
C2orf44   500000 perm   177 sec   (2821 perm/sec)   p_kst 2.460000e-04   p_cons 2.111040e-01   p_joint 5.820000e-04

Joint ci ratio: 2.262545e-01	ci left: 5.217142e-04	ci right 6.566133e-04	k: 299	n:510000
Cons ci ratio: 1.061309e-02	ci left: 2.099220e-01	ci right 2.121637e-01	k: 107631	n:510000
KS ci ratio: 3.505721e-01	ci left: 2.022329e-04	ci right 2.898840e-04	k: 124	n:510000
C2orf44   510000 perm   182 sec   (2795 perm/sec)   p_kst 2.431373e-04   p_cons 2.110412e-01   p_joint 5.862745e-04

Joint ci ratio: 2.289441e-01	ci left: 4.989865e-04	ci right 6.297594e-04	k: 292	n:520000
Cons ci ratio: 1.051124e-02	ci left: 2.099109e-01	ci right 2.121308e-01	k: 109730	n:520000
KS ci ratio: 3.491787e-01	ci left: 2.000979e-04	ci right 2.864008e-04	k: 125	n:520000
C2orf44   520000 perm   188 sec   (2766 perm/sec)   p_kst 2.403846e-04   p_cons 2.110192e-01   p_joint 5.615385e-04

Joint ci ratio: 2.313274e-01	ci left: 4.789029e-04	ci right 6.059057e-04	k: 286	n:530000
Cons ci ratio: 1.041350e-02	ci left: 2.098607e-01	ci right 2.120594e-01	k: 111808	n:530000
KS ci ratio: 3.464402e-01	ci left: 1.997664e-04	ci right 2.850990e-04	k: 127	n:530000
C2orf44   530000 perm   193 sec   (2740 perm/sec)   p_kst 2.396226e-04   p_cons 2.109585e-01   p_joint 5.396226e-04

Joint ci ratio: 2.281687e-01	ci left: 4.839967e-04	ci right 6.103510e-04	k: 294	n:540000
Cons ci ratio: 1.031896e-02	ci left: 2.097959e-01	ci right 2.119738e-01	k: 113877	n:540000
KS ci ratio: 3.411502e-01	ci left: 2.028350e-04	ci right 2.878638e-04	k: 131	n:540000
C2orf44   540000 perm   199 sec   (2716 perm/sec)   p_kst 2.425926e-04   p_cons 2.108833e-01   p_joint 5.444444e-04

Joint ci ratio: 2.255085e-01	ci left: 4.872010e-04	ci right 6.127028e-04	k: 301	n:550000
Cons ci ratio: 1.022740e-02	ci left: 2.097190e-01	ci right 2.118767e-01	k: 115938	n:550000
KS ci ratio: 3.336504e-01	ci left: 2.091322e-04	ci right 2.944595e-04	k: 137	n:550000
C2orf44   550000 perm   204 sec   (2692 perm/sec)   p_kst 2.490909e-04   p_cons 2.107964e-01   p_joint 5.472727e-04

Joint ci ratio: 2.535094e-01	ci left: 3.727258e-04	ci right 4.825505e-04	k: 238	n:560000
Cons ci ratio: 1.013556e-02	ci left: 2.097323e-01	ci right 2.118707e-01	k: 118048	n:560000
KS ci ratio: 3.312588e-01	ci left: 2.086711e-04	ci right 2.930698e-04	k: 139	n:560000
C2orf44   560000 perm   210 sec   (2667 perm/sec)   p_kst 2.482143e-04   p_cons 2.108000e-01   p_joint 4.250000e-04

Joint ci ratio: 2.556597e-01	ci left: 3.596166e-04	ci right 4.666208e-04	k: 234	n:570000
Cons ci ratio: 1.004239e-02	ci left: 2.098696e-01	ci right 2.119895e-01	k: 120229	n:570000
KS ci ratio: 3.289178e-01	ci left: 2.082282e-04	ci right 2.917267e-04	k: 141	n:570000
C2orf44   570000 perm   216 sec   (2645 perm/sec)   p_kst 2.473684e-04   p_cons 2.109281e-01   p_joint 4.105263e-04

Joint ci ratio: 2.535113e-01	ci left: 3.598728e-04	ci right 4.659113e-04	k: 238	n:580000
Cons ci ratio: 9.955771e-03	ci left: 2.098679e-01	ci right 2.119695e-01	k: 122332	n:580000
KS ci ratio: 3.277662e-01	ci left: 2.062200e-04	ci right 2.885628e-04	k: 142	n:580000
C2orf44   580000 perm   221 sec   (2622 perm/sec)   p_kst 2.448276e-04   p_cons 2.109172e-01   p_joint 4.103448e-04

Joint ci ratio: 2.503874e-01	ci left: 3.633008e-04	ci right 4.688246e-04	k: 244	n:590000
Cons ci ratio: 9.869993e-03	ci left: 2.099121e-01	ci right 2.119958e-01	k: 124462	n:590000
KS ci ratio: 3.232756e-01	ci left: 2.089506e-04	ci right 2.910035e-04	k: 146	n:590000
C2orf44   590000 perm   227 sec   (2598 perm/sec)   p_kst 2.474576e-04   p_cons 2.109525e-01   p_joint 4.135593e-04

Joint ci ratio: 2.488686e-01	ci left: 3.619330e-04	ci right 4.663231e-04	k: 247	n:600000
Cons ci ratio: 9.789287e-03	ci left: 2.098567e-01	ci right 2.119228e-01	k: 126533	n:600000
KS ci ratio: 3.221820e-01	ci left: 2.069997e-04	ci right 2.879548e-04	k: 147	n:600000
C2orf44   600000 perm   233 sec   (2577 perm/sec)   p_kst 2.450000e-04   p_cons 2.108883e-01   p_joint 4.116667e-04

Joint ci ratio: 1.610327e-01	ci left: 8.923390e-04	ci right 1.050167e-03	k: 591	n:610000
Cons ci ratio: 9.706416e-03	ci left: 2.099439e-01	ci right 2.119933e-01	k: 128690	n:610000
KS ci ratio: 3.168732e-01	ci left: 2.111458e-04	ci right 2.920859e-04	k: 152	n:610000
C2orf44   610000 perm   239 sec   (2555 perm/sec)   p_kst 2.491803e-04   p_cons 2.109672e-01   p_joint 9.688525e-04

Joint ci ratio: 1.600893e-01	ci left: 8.887830e-04	ci right 1.044973e-03	k: 598	n:620000
Cons ci ratio: 9.626919e-03	ci left: 2.099833e-01	ci right 2.120162e-01	k: 130819	n:620000
KS ci ratio: 3.128102e-01	ci left: 2.136821e-04	ci right 2.943345e-04	k: 156	n:620000
C2orf44   620000 perm   245 sec   (2533 perm/sec)   p_kst 2.516129e-04   p_cons 2.109984e-01   p_joint 9.645161e-04

Joint ci ratio: 1.587695e-01	ci left: 8.899151e-04	ci right 1.044891e-03	k: 608	n:630000
Cons ci ratio: 9.548890e-03	ci left: 2.100374e-01	ci right 2.120542e-01	k: 132958	n:630000
KS ci ratio: 3.098636e-01	ci left: 2.146803e-04	ci right 2.947953e-04	k: 159	n:630000
C2orf44   630000 perm   251 sec   (2509 perm/sec)   p_kst 2.523810e-04   p_cons 2.110444e-01   p_joint 9.650794e-04

Joint ci ratio: 1.352446e-01	ci left: 1.222264e-03	ci right 1.401049e-03	k: 838	n:640000
Cons ci ratio: 9.474860e-03	ci left: 2.100149e-01	ci right 2.120158e-01	k: 135049	n:640000
KS ci ratio: 3.042113e-01	ci left: 2.199789e-04	ci right 3.002839e-04	k: 165	n:640000
C2orf44   640000 perm   257 sec   (2489 perm/sec)   p_kst 2.578125e-04   p_cons 2.110141e-01   p_joint 1.309375e-03

Joint ci ratio: 1.340514e-01	ci left: 1.225760e-03	ci right 1.403348e-03	k: 853	n:650000
Cons ci ratio: 9.401788e-03	ci left: 2.100194e-01	ci right 2.120048e-01	k: 137157	n:650000
KS ci ratio: 3.023952e-01	ci left: 2.194374e-04	ci right 2.989745e-04	k: 167	n:650000
C2orf44   650000 perm   264 sec   (2466 perm/sec)   p_kst 2.569231e-04   p_cons 2.110108e-01   p_joint 1.312308e-03

Joint ci ratio: 1.346062e-01	ci left: 1.196937e-03	ci right 1.371124e-03	k: 846	n:660000
Cons ci ratio: 9.331018e-03	ci left: 2.100010e-01	ci right 2.119712e-01	k: 139250	n:660000
KS ci ratio: 3.014996e-01	ci left: 2.175129e-04	ci right 2.960743e-04	k: 168	n:660000
C2orf44   660000 perm   270 sec   (2440 perm/sec)   p_kst 2.545455e-04   p_cons 2.109848e-01   p_joint 1.281818e-03

Joint ci ratio: 1.351679e-01	ci left: 1.168976e-03	ci right 1.339861e-03	k: 839	n:670000
Cons ci ratio: 9.261157e-03	ci left: 2.100071e-01	ci right 2.119625e-01	k: 141359	n:670000
KS ci ratio: 3.006119e-01	ci left: 2.156462e-04	ci right 2.932602e-04	k: 169	n:670000
C2orf44   670000 perm   277 sec   (2419 perm/sec)   p_kst 2.522388e-04   p_cons 2.109836e-01   p_joint 1.252239e-03

Joint ci ratio: 1.342127e-01	ci left: 1.168837e-03	ci right 1.338399e-03	k: 851	n:680000
Cons ci ratio: 9.190773e-03	ci left: 2.100880e-01	ci right 2.120292e-01	k: 143519	n:680000
KS ci ratio: 2.988592e-01	ci left: 2.151950e-04	ci right 2.921093e-04	k: 171	n:680000
C2orf44   680000 perm   283 sec   (2399 perm/sec)   p_kst 2.514706e-04   p_cons 2.110574e-01   p_joint 1.251471e-03

Joint ci ratio: 1.332775e-01	ci left: 1.168707e-03	ci right 1.336974e-03	k: 863	n:690000
Cons ci ratio: 9.127369e-03	ci left: 2.099698e-01	ci right 2.118964e-01	k: 145543	n:690000
KS ci ratio: 2.962864e-01	ci left: 2.160995e-04	ci right 2.925472e-04	k: 174	n:690000
C2orf44   690000 perm   290 sec   (2380 perm/sec)   p_kst 2.521739e-04   p_cons 2.109319e-01   p_joint 1.250725e-03

Joint ci ratio: 1.322105e-01	ci left: 1.171347e-03	ci right 1.338538e-03	k: 877	n:700000
Cons ci ratio: 9.061835e-03	ci left: 2.099805e-01	ci right 2.118933e-01	k: 147655	n:700000
KS ci ratio: 2.954438e-01	ci left: 2.143349e-04	ci right 2.899023e-04	k: 175	n:700000
C2orf44   700000 perm   297 sec   (2360 perm/sec)   p_kst 2.500000e-04   p_cons 2.109357e-01   p_joint 1.252857e-03

Joint ci ratio: 1.314642e-01	ci left: 1.168469e-03	ci right 1.334235e-03	k: 887	n:710000
Cons ci ratio: 8.996704e-03	ci left: 2.100275e-01	ci right 2.119270e-01	k: 149793	n:710000
KS ci ratio: 2.929574e-01	ci left: 2.152297e-04	ci right 2.903555e-04	k: 178	n:710000
C2orf44   710000 perm   303 sec   (2341 perm/sec)   p_kst 2.507042e-04   p_cons 2.109761e-01   p_joint 1.249296e-03

Joint ci ratio: 1.304398e-01	ci left: 1.171048e-03	ci right 1.335785e-03	k: 901	n:720000
Cons ci ratio: 8.934335e-03	ci left: 2.100220e-01	ci right 2.119081e-01	k: 151894	n:720000
KS ci ratio: 2.905328e-01	ci left: 2.161022e-04	ci right 2.907934e-04	k: 181	n:720000
C2orf44   720000 perm   310 sec   (2322 perm/sec)   p_kst 2.513889e-04   p_cons 2.109639e-01   p_joint 1.251389e-03

Joint ci ratio: 1.292274e-01	ci left: 1.177538e-03	ci right 1.341530e-03	k: 918	n:730000
Cons ci ratio: 8.873429e-03	ci left: 2.100098e-01	ci right 2.118829e-01	k: 153990	n:730000
KS ci ratio: 2.889496e-01	ci left: 2.156825e-04	ci right 2.897483e-04	k: 183	n:730000
C2orf44   730000 perm   317 sec   (2304 perm/sec)   p_kst 2.506849e-04   p_cons 2.109452e-01   p_joint 1.257534e-03

Joint ci ratio: 1.291581e-01	ci left: 1.162932e-03	ci right 1.324796e-03	k: 919	n:740000
Cons ci ratio: 8.811319e-03	ci left: 2.100897e-01	ci right 2.119504e-01	k: 156154	n:740000
KS ci ratio: 2.889501e-01	ci left: 2.127678e-04	ci right 2.858328e-04	k: 183	n:740000
C2orf44   740000 perm   324 sec   (2285 perm/sec)   p_kst 2.472973e-04   p_cons 2.110189e-01   p_joint 1.241892e-03

Joint ci ratio: 1.283930e-01	ci left: 1.161621e-03	ci right 1.322271e-03	k: 930	n:750000
Cons ci ratio: 8.750845e-03	ci left: 2.101542e-01	ci right 2.120027e-01	k: 158308	n:750000
KS ci ratio: 2.881684e-01	ci left: 2.111677e-04	ci right 2.834513e-04	k: 184	n:750000
C2orf44   750000 perm   331 sec   (2267 perm/sec)   p_kst 2.453333e-04   p_cons 2.110773e-01   p_joint 1.240000e-03

Joint ci ratio: 1.276412e-01	ci left: 1.160346e-03	ci right 1.319810e-03	k: 941	n:760000
Cons ci ratio: 8.694656e-03	ci left: 2.101002e-01	ci right 2.119362e-01	k: 160373	n:760000
KS ci ratio: 2.866233e-01	ci left: 2.108311e-04	ci right 2.825425e-04	k: 186	n:760000
C2orf44   760000 perm   338 sec   (2248 perm/sec)   p_kst 2.447368e-04   p_cons 2.110171e-01   p_joint 1.238158e-03

Joint ci ratio: 1.281884e-01	ci left: 1.135219e-03	ci right 1.291949e-03	k: 933	n:770000
Cons ci ratio: 8.638221e-03	ci left: 2.100982e-01	ci right 2.119222e-01	k: 162477	n:770000
KS ci ratio: 2.843514e-01	ci left: 2.117102e-04	ci right 2.830474e-04	k: 189	n:770000
C2orf44   770000 perm   345 sec   (2231 perm/sec)   p_kst 2.454545e-04   p_cons 2.110091e-01   p_joint 1.211688e-03

Joint ci ratio: 1.277112e-01	ci left: 1.129351e-03	ci right 1.284647e-03	k: 940	n:780000
Cons ci ratio: 8.583069e-03	ci left: 2.100885e-01	ci right 2.119008e-01	k: 164575	n:780000
KS ci ratio: 2.836063e-01	ci left: 2.101867e-04	ci right 2.807917e-04	k: 190	n:780000
C2orf44   780000 perm   352 sec   (2214 perm/sec)   p_kst 2.435897e-04   p_cons 2.109936e-01   p_joint 1.205128e-03

Joint ci ratio: 1.294453e-01	ci left: 1.084427e-03	ci right 1.235725e-03	k: 915	n:790000
Cons ci ratio: 8.528993e-03	ci left: 2.100779e-01	ci right 2.118786e-01	k: 166672	n:790000
KS ci ratio: 2.821331e-01	ci left: 2.098782e-04	ci right 2.799482e-04	k: 192	n:790000
C2orf44   790000 perm   360 sec   (2195 perm/sec)   p_kst 2.430380e-04   p_cons 2.109772e-01   p_joint 1.158228e-03

Joint ci ratio: 1.298013e-01	ci left: 1.064823e-03	ci right 1.213827e-03	k: 910	n:800000
Cons ci ratio: 8.474494e-03	ci left: 2.101238e-01	ci right 2.119133e-01	k: 168814	n:800000
KS ci ratio: 2.792539e-01	ci left: 2.119028e-04	ci right 2.817998e-04	k: 196	n:800000
C2orf44   800000 perm   367 sec   (2179 perm/sec)   p_kst 2.450000e-04   p_cons 2.110175e-01   p_joint 1.137500e-03

Joint ci ratio: 1.314003e-01	ci left: 1.025403e-03	ci right 1.170796e-03	k: 888	n:810000
Cons ci ratio: 8.419778e-03	ci left: 2.102179e-01	ci right 2.119965e-01	k: 170996	n:810000
KS ci ratio: 2.764610e-01	ci left: 2.138810e-04	ci right 2.836022e-04	k: 200	n:810000
C2orf44   810000 perm   375 sec   (2159 perm/sec)   p_kst 2.469136e-04   p_cons 2.111062e-01   p_joint 1.096296e-03

Joint ci ratio: 1.305949e-01	ci left: 1.025873e-03	ci right 1.170372e-03	k: 899	n:820000
Cons ci ratio: 8.366292e-03	ci left: 2.103024e-01	ci right 2.120704e-01	k: 173172	n:820000
KS ci ratio: 2.744206e-01	ci left: 2.146786e-04	ci right 2.840542e-04	k: 203	n:820000
C2orf44   820000 perm   383 sec   (2143 perm/sec)   p_kst 2.475610e-04   p_cons 2.111854e-01   p_joint 1.096341e-03

Joint ci ratio: 1.295906e-01	ci left: 1.029832e-03	ci right 1.173687e-03	k: 913	n:830000
Cons ci ratio: 8.312910e-03	ci left: 2.104210e-01	ci right 2.121786e-01	k: 175378	n:830000
KS ci ratio: 2.711178e-01	ci left: 2.177043e-04	ci right 2.870668e-04	k: 208	n:830000
C2orf44   830000 perm   390 sec   (2127 perm/sec)   p_kst 2.506024e-04   p_cons 2.112988e-01   p_joint 1.100000e-03

Joint ci ratio: 1.298049e-01	ci left: 1.014116e-03	ci right 1.156028e-03	k: 910	n:840000
Cons ci ratio: 8.260890e-03	ci left: 2.105225e-01	ci right 2.122700e-01	k: 177572	n:840000
KS ci ratio: 2.698299e-01	ci left: 2.173321e-04	ci right 2.861914e-04	k: 210	n:840000
C2orf44   840000 perm   398 sec   (2111 perm/sec)   p_kst 2.500000e-04   p_cons 2.113952e-01   p_joint 1.083333e-03

Joint ci ratio: 1.304524e-01	ci left: 9.919405e-04	ci right 1.131495e-03	k: 901	n:850000
Cons ci ratio: 8.212210e-03	ci left: 2.105253e-01	ci right 2.122625e-01	k: 179684	n:850000
KS ci ratio: 2.660728e-01	ci left: 2.213600e-04	ci right 2.903562e-04	k: 216	n:850000
C2orf44   850000 perm   405 sec   (2097 perm/sec)   p_kst 2.541176e-04   p_cons 2.113929e-01   p_joint 1.060000e-03

Joint ci ratio: 1.297353e-01	ci left: 9.916558e-04	ci right 1.130345e-03	k: 911	n:860000
Cons ci ratio: 8.161847e-03	ci left: 2.106315e-01	ci right 2.123588e-01	k: 181885	n:860000
KS ci ratio: 2.648552e-01	ci left: 2.209569e-04	ci right 2.894600e-04	k: 218	n:860000
C2orf44   860000 perm   413 sec   (2081 perm/sec)   p_kst 2.534884e-04   p_cons 2.114942e-01   p_joint 1.059302e-03

Joint ci ratio: 1.314794e-01	ci left: 9.535713e-04	ci right 1.088867e-03	k: 887	n:870000
Cons ci ratio: 8.114803e-03	ci left: 2.106365e-01	ci right 2.123539e-01	k: 184000	n:870000
KS ci ratio: 2.624688e-01	ci left: 2.227110e-04	ci right 2.910337e-04	k: 222	n:870000
C2orf44   870000 perm   421 sec   (2067 perm/sec)   p_kst 2.551724e-04   p_cons 2.114943e-01   p_joint 1.019540e-03

Joint ci ratio: 1.305272e-01	ci left: 9.570240e-04	ci right 1.091750e-03	k: 900	n:880000
Cons ci ratio: 8.066310e-03	ci left: 2.107345e-01	ci right 2.124424e-01	k: 186197	n:880000
KS ci ratio: 2.612998e-01	ci left: 2.223038e-04	ci right 2.901481e-04	k: 224	n:880000
C2orf44   880000 perm   429 sec   (2052 perm/sec)   p_kst 2.545455e-04   p_cons 2.115875e-01   p_joint 1.022727e-03

Joint ci ratio: 1.318530e-01	ci left: 9.267090e-04	ci right 1.058596e-03	k: 882	n:890000
Cons ci ratio: 8.019728e-03	ci left: 2.107866e-01	ci right 2.124849e-01	k: 188355	n:890000
KS ci ratio: 2.607213e-01	ci left: 2.208560e-04	ci right 2.880850e-04	k: 225	n:890000
C2orf44   890000 perm   437 sec   (2038 perm/sec)   p_kst 2.528090e-04   p_cons 2.116348e-01   p_joint 9.910112e-04

Joint ci ratio: 1.312598e-01	ci left: 9.250085e-04	ci right 1.056015e-03	k: 890	n:900000
Cons ci ratio: 7.975617e-03	ci left: 2.107676e-01	ci right 2.124564e-01	k: 190450	n:900000
KS ci ratio: 2.601466e-01	ci left: 2.194406e-04	ci right 2.860675e-04	k: 226	n:900000
C2orf44   900000 perm   445 sec   (2023 perm/sec)   p_kst 2.511111e-04   p_cons 2.116111e-01   p_joint 9.888889e-04

Joint ci ratio: 1.307475e-01	ci left: 9.222837e-04	ci right 1.052355e-03	k: 897	n:910000
Cons ci ratio: 7.929849e-03	ci left: 2.108490e-01	ci right 2.125287e-01	k: 192636	n:910000
KS ci ratio: 2.590082e-01	ci left: 2.190840e-04	ci right 2.852644e-04	k: 228	n:910000
C2orf44   910000 perm   453 sec   (2010 perm/sec)   p_kst 2.505495e-04   p_cons 2.116879e-01   p_joint 9.857143e-04

Joint ci ratio: 1.300972e-01	ci left: 9.217223e-04	ci right 1.051018e-03	k: 906	n:920000
Cons ci ratio: 7.886143e-03	ci left: 2.108743e-01	ci right 2.125449e-01	k: 194772	n:920000
KS ci ratio: 2.573280e-01	ci left: 2.197526e-04	ci right 2.856351e-04	k: 231	n:920000
C2orf44   920000 perm   461 sec   (1996 perm/sec)   p_kst 2.510870e-04   p_cons 2.117087e-01   p_joint 9.847826e-04

Joint ci ratio: 1.295983e-01	ci left: 9.190936e-04	ci right 1.047488e-03	k: 913	n:930000
Cons ci ratio: 7.843759e-03	ci left: 2.108733e-01	ci right 2.125349e-01	k: 196884	n:930000
KS ci ratio: 2.551377e-01	ci left: 2.214145e-04	ci right 2.871404e-04	k: 235	n:930000
C2orf44   930000 perm   469 sec   (1982 perm/sec)   p_kst 2.526882e-04   p_cons 2.117032e-01   p_joint 9.817204e-04

Joint ci ratio: 1.286861e-01	ci left: 9.226991e-04	ci right 1.050621e-03	k: 926	n:940000
Cons ci ratio: 7.801304e-03	ci left: 2.109043e-01	ci right 2.125571e-01	k: 199026	n:940000
KS ci ratio: 2.535313e-01	ci left: 2.220471e-04	ci right 2.874802e-04	k: 238	n:940000
C2orf44   940000 perm   478 sec   (1968 perm/sec)   p_kst 2.531915e-04   p_cons 2.117298e-01   p_joint 9.851064e-04

Joint ci ratio: 1.300275e-01	ci left: 8.936328e-04	ci right 1.018916e-03	k: 907	n:950000
Cons ci ratio: 7.760389e-03	ci left: 2.108978e-01	ci right 2.125419e-01	k: 201133	n:950000
KS ci ratio: 2.535317e-01	ci left: 2.197097e-04	ci right 2.844542e-04	k: 238	n:950000
C2orf44   950000 perm   486 sec   (1955 perm/sec)   p_kst 2.505263e-04   p_cons 2.117189e-01   p_joint 9.547368e-04

Joint ci ratio: 1.314116e-01	ci left: 8.651788e-04	ci right 9.878645e-04	k: 888	n:960000
Cons ci ratio: 7.718785e-03	ci left: 2.109487e-01	ci right 2.125843e-01	k: 203295	n:960000
KS ci ratio: 2.514362e-01	ci left: 2.213242e-04	ci right 2.859209e-04	k: 242	n:960000
C2orf44   960000 perm   495 sec   (1941 perm/sec)   p_kst 2.520833e-04   p_cons 2.117656e-01   p_joint 9.250000e-04

Joint ci ratio: 1.304610e-01	ci left: 8.692226e-04	ci right 9.915210e-04	k: 901	n:970000
Cons ci ratio: 7.680072e-03	ci left: 2.109018e-01	ci right 2.125288e-01	k: 205363	n:970000
KS ci ratio: 2.483879e-01	ci left: 2.248407e-04	ci right 2.895453e-04	k: 248	n:970000
C2orf44   970000 perm   503 sec   (1928 perm/sec)   p_kst 2.556701e-04   p_cons 2.117144e-01   p_joint 9.288660e-04

Joint ci ratio: 1.300294e-01	ci left: 8.662759e-04	ci right 9.877254e-04	k: 907	n:980000
Cons ci ratio: 7.640698e-03	ci left: 2.109099e-01	ci right 2.125286e-01	k: 207484	n:980000
KS ci ratio: 2.459307e-01	ci left: 2.273325e-04	ci right 2.920081e-04	k: 253	n:980000
C2orf44   980000 perm   512 sec   (1915 perm/sec)   p_kst 2.581633e-04   p_cons 2.117184e-01   p_joint 9.255102e-04

Joint ci ratio: 1.293192e-01	ci left: 8.672990e-04	ci right 9.881769e-04	k: 917	n:990000
Cons ci ratio: 7.601164e-03	ci left: 2.109511e-01	ci right 2.125617e-01	k: 209638	n:990000
KS ci ratio: 2.440166e-01	ci left: 2.288287e-04	ci right 2.933464e-04	k: 257	n:990000
C2orf44   990000 perm   521 sec   (1902 perm/sec)   p_kst 2.595960e-04   p_cons 2.117556e-01   p_joint 9.262626e-04

Joint ci ratio: 1.298875e-01	ci left: 8.508849e-04	ci right 9.700364e-04	k: 909	n:1000000
Cons ci ratio: 7.562396e-03	ci left: 2.109845e-01	ci right 2.125871e-01	k: 211785	n:1000000
KS ci ratio: 2.430764e-01	ci left: 2.284183e-04	ci right 2.925348e-04	k: 259	n:1000000
C2orf44   1000000 perm   529 sec   (1890 perm/sec)   p_kst 2.590000e-04   p_cons 2.117850e-01   p_joint 9.090000e-04

Joint ci ratio: 1.298881e-01	ci left: 8.424601e-04	ci right 9.604324e-04	k: 909	n:1010000
Cons ci ratio: 7.523813e-03	ci left: 2.110351e-01	ci right 2.126299e-01	k: 213950	n:1010000
KS ci ratio: 2.416860e-01	ci left: 2.289467e-04	ci right 2.927887e-04	k: 262	n:1010000
C2orf44   1010000 perm   538 sec   (1877 perm/sec)   p_kst 2.594059e-04   p_cons 2.118317e-01   p_joint 9.000000e-04

Joint ci ratio: 1.298887e-01	ci left: 8.342004e-04	ci right 9.510167e-04	k: 909	n:1020000
Cons ci ratio: 7.487772e-03	ci left: 2.109976e-01	ci right 2.125844e-01	k: 216026	n:1020000
KS ci ratio: 2.412280e-01	ci left: 2.276231e-04	ci right 2.909579e-04	k: 263	n:1020000
C2orf44   1020000 perm   547 sec   (1865 perm/sec)   p_kst 2.578431e-04   p_cons 2.117902e-01   p_joint 8.911765e-04

Joint ci ratio: 1.294628e-01	ci left: 8.317376e-04	ci right 9.477977e-04	k: 915	n:1030000
Cons ci ratio: 7.451029e-03	ci left: 2.110151e-01	ci right 2.125942e-01	k: 218158	n:1030000
KS ci ratio: 2.407726e-01	ci left: 2.263254e-04	ci right 2.891625e-04	k: 264	n:1030000
C2orf44   1030000 perm   556 sec   (1854 perm/sec)   p_kst 2.563107e-04   p_cons 2.118039e-01   p_joint 8.883495e-04

Joint ci ratio: 1.296050e-01	ci left: 8.218791e-04	ci right 9.366992e-04	k: 913	n:1040000
Cons ci ratio: 7.414801e-03	ci left: 2.110333e-01	ci right 2.126048e-01	k: 220291	n:1040000
KS ci ratio: 2.394211e-01	ci left: 2.268603e-04	ci right 2.894399e-04	k: 267	n:1040000
C2orf44   1040000 perm   565 sec   (1842 perm/sec)   p_kst 2.567308e-04   p_cons 2.118183e-01   p_joint 8.778846e-04

Joint ci ratio: 1.309752e-01	ci left: 7.965455e-04	ci right 9.090944e-04	k: 894	n:1050000
Cons ci ratio: 7.379728e-03	ci left: 2.110226e-01	ci right 2.125866e-01	k: 222394	n:1050000
KS ci ratio: 2.051464e-01	ci left: 3.119693e-04	ci right 3.841671e-04	k: 364	n:1050000
C2orf44   1050000 perm   574 sec   (1829 perm/sec)   p_kst 3.466667e-04   p_cons 2.118038e-01   p_joint 8.514286e-04

Joint ci ratio: 1.302495e-01	ci left: 7.981567e-04	ci right 9.102601e-04	k: 904	n:1060000
Cons ci ratio: 7.345439e-03	ci left: 2.109989e-01	ci right 2.125555e-01	k: 224483	n:1060000
KS ci ratio: 2.048662e-01	ci left: 3.099211e-04	ci right 3.815347e-04	k: 365	n:1060000
C2orf44   1060000 perm   583 sec   (1817 perm/sec)   p_kst 3.443396e-04   p_cons 2.117764e-01   p_joint 8.528302e-04

Joint ci ratio: 1.323902e-01	ci left: 7.644839e-04	ci right 8.737614e-04	k: 875	n:1070000
Cons ci ratio: 7.309822e-03	ci left: 2.110579e-01	ci right 2.126072e-01	k: 226660	n:1070000
KS ci ratio: 2.043089e-01	ci left: 3.087981e-04	ci right 3.799338e-04	k: 367	n:1070000
C2orf44   1070000 perm   593 sec   (1806 perm/sec)   p_kst 3.429907e-04   p_cons 2.118318e-01   p_joint 8.177570e-04

Joint ci ratio: 1.143446e-01	ci left: 1.024869e-03	ci right 1.150054e-03	k: 1173	n:1080000
Cons ci ratio: 7.101235e-03	ci left: 2.192782e-01	ci right 2.208418e-01	k: 237664	n:1080000
KS ci ratio: 2.029348e-01	ci left: 3.103324e-04	ci right 3.812812e-04	k: 372	n:1080000
C2orf44   1080000 perm   602 sec   (1794 perm/sec)   p_kst 3.444444e-04   p_cons 2.200593e-01   p_joint 1.086111e-03

Joint ci ratio: 1.179718e-01	ci left: 9.522189e-04	ci right 1.072476e-03	k: 1102	n:1090000
Cons ci ratio: 7.069353e-03	ci left: 2.192446e-01	ci right 2.208009e-01	k: 239824	n:1090000
KS ci ratio: 2.029351e-01	ci left: 3.074853e-04	ci right 3.777833e-04	k: 372	n:1090000
C2orf44   1090000 perm   611 sec   (1783 perm/sec)   p_kst 3.412844e-04   p_cons 2.200220e-01   p_joint 1.011009e-03

Joint ci ratio: 1.180259e-01	ci left: 9.426798e-04	ci right 1.061791e-03	k: 1101	n:1100000
Cons ci ratio: 7.036703e-03	ci left: 2.192697e-01	ci right 2.208190e-01	k: 242048	n:1100000
KS ci ratio: 2.023933e-01	ci left: 3.064159e-04	ci right 3.762592e-04	k: 374	n:1100000
C2orf44   1100000 perm   621 sec   (1772 perm/sec)   p_kst 3.400000e-04   p_cons 2.200436e-01   p_joint 1.000909e-03

Joint ci ratio: 1.174940e-01	ci left: 9.429309e-04	ci right 1.061500e-03	k: 1111	n:1110000
Cons ci ratio: 7.003527e-03	ci left: 2.193421e-01	ci right 2.208846e-01	k: 244325	n:1110000
KS ci ratio: 2.015886e-01	ci left: 3.062214e-04	ci right 3.757087e-04	k: 377	n:1110000
C2orf44   1110000 perm   630 sec   (1761 perm/sec)   p_kst 3.396396e-04   p_cons 2.201126e-01   p_joint 1.000901e-03

Joint ci ratio: 1.168651e-01	ci left: 9.449122e-04	ci right 1.063050e-03	k: 1123	n:1120000
Cons ci ratio: 6.971958e-03	ci left: 2.193570e-01	ci right 2.208926e-01	k: 246539	n:1120000
KS ci ratio: 2.010576e-01	ci left: 3.051829e-04	ci right 3.742298e-04	k: 379	n:1120000
C2orf44   1120000 perm   640 sec   (1751 perm/sec)   p_kst 3.383929e-04   p_cons 2.201241e-01   p_joint 1.002679e-03

Joint ci ratio: 1.163486e-01	ci left: 9.451415e-04	ci right 1.062750e-03	k: 1133	n:1130000
Cons ci ratio: 6.940526e-03	ci left: 2.193859e-01	ci right 2.209147e-01	k: 248769	n:1130000
KS ci ratio: 2.005307e-01	ci left: 3.041631e-04	ci right 3.727768e-04	k: 381	n:1130000
C2orf44   1130000 perm   649 sec   (1740 perm/sec)   p_kst 3.371681e-04   p_cons 2.201496e-01   p_joint 1.002655e-03

Joint ci ratio: 1.172321e-01	ci left: 9.223735e-04	ci right 1.038081e-03	k: 1116	n:1140000
Cons ci ratio: 6.910027e-03	ci left: 2.193888e-01	ci right 2.209109e-01	k: 250970	n:1140000
KS ci ratio: 1.994889e-01	ci left: 3.048281e-04	ci right 3.731911e-04	k: 385	n:1140000
C2orf44   1140000 perm   659 sec   (1730 perm/sec)   p_kst 3.377193e-04   p_cons 2.201491e-01   p_joint 9.789474e-04

Joint ci ratio: 1.169708e-01	ci left: 9.185733e-04	ci right 1.033529e-03	k: 1121	n:1150000
Cons ci ratio: 6.879683e-03	ci left: 2.194038e-01	ci right 2.209193e-01	k: 253185	n:1150000
KS ci ratio: 1.989742e-01	ci left: 3.038298e-04	ci right 3.717718e-04	k: 387	n:1150000
C2orf44   1150000 perm   669 sec   (1720 perm/sec)   p_kst 3.365217e-04   p_cons 2.201609e-01   p_joint 9.747826e-04

Joint ci ratio: 1.164530e-01	ci left: 9.190236e-04	ci right 1.033492e-03	k: 1131	n:1160000
Cons ci ratio: 6.848927e-03	ci left: 2.194591e-01	ci right 2.209682e-01	k: 255447	n:1160000
KS ci ratio: 1.977043e-01	ci left: 3.053069e-04	ci right 3.730909e-04	k: 392	n:1160000
C2orf44   1160000 perm   678 sec   (1710 perm/sec)   p_kst 3.379310e-04   p_cons 2.202129e-01   p_joint 9.750000e-04

Joint ci ratio: 1.162481e-01	ci left: 9.144878e-04	ci right 1.028177e-03	k: 1135	n:1170000
Cons ci ratio: 6.819410e-03	ci left: 2.194716e-01	ci right 2.209742e-01	k: 257660	n:1170000
KS ci ratio: 1.962119e-01	ci left: 3.075728e-04	ci right 3.752828e-04	k: 398	n:1170000
C2orf44   1170000 perm   688 sec   (1700 perm/sec)   p_kst 3.401709e-04   p_cons 2.202222e-01   p_joint 9.700855e-04

Joint ci ratio: 1.157903e-01	ci left: 9.141437e-04	ci right 1.027312e-03	k: 1144	n:1180000
Cons ci ratio: 6.789787e-03	ci left: 2.195085e-01	ci right 2.210048e-01	k: 259902	n:1180000
KS ci ratio: 1.959667e-01	ci left: 3.057721e-04	ci right 3.729915e-04	k: 399	n:1180000
C2orf44   1180000 perm   698 sec   (1690 perm/sec)   p_kst 3.381356e-04   p_cons 2.202559e-01   p_joint 9.694915e-04

Joint ci ratio: 1.160447e-01	ci left: 9.023817e-04	ci right 1.014356e-03	k: 1139	n:1190000
Cons ci ratio: 6.760695e-03	ci left: 2.195372e-01	ci right 2.210272e-01	k: 262135	n:1190000
KS ci ratio: 1.949941e-01	ci left: 3.063994e-04	ci right 3.733828e-04	k: 403	n:1190000
C2orf44   1190000 perm   708 sec   (1681 perm/sec)   p_kst 3.386555e-04   p_cons 2.202815e-01   p_joint 9.571429e-04

Joint ci ratio: 1.170254e-01	ci left: 8.794894e-04	ci right 9.896089e-04	k: 1120	n:1200000
Cons ci ratio: 6.733166e-03	ci left: 2.195046e-01	ci right 2.209884e-01	k: 264295	n:1200000
KS ci ratio: 1.947534e-01	ci left: 3.046387e-04	ci right 3.711452e-04	k: 404	n:1200000
C2orf44   1200000 perm   718 sec   (1671 perm/sec)   p_kst 3.366667e-04   p_cons 2.202458e-01   p_joint 9.333333e-04

Joint ci ratio: 1.165069e-01	ci left: 8.802440e-04	ci right 9.899361e-04	k: 1130	n:1210000
Cons ci ratio: 6.705228e-03	ci left: 2.195106e-01	ci right 2.209882e-01	k: 266501	n:1210000
KS ci ratio: 1.937987e-01	ci left: 3.052660e-04	ci right 3.715443e-04	k: 408	n:1210000
C2orf44   1210000 perm   728 sec   (1662 perm/sec)   p_kst 3.371901e-04   p_cons 2.202488e-01   p_joint 9.338843e-04

Joint ci ratio: 1.159443e-01	ci left: 8.817832e-04	ci right 9.911002e-04	k: 1141	n:1220000
Cons ci ratio: 6.678241e-03	ci left: 2.194854e-01	ci right 2.209569e-01	k: 268669	n:1220000
KS ci ratio: 1.921610e-01	ci left: 3.082244e-04	ci right 3.745134e-04	k: 415	n:1220000
C2orf44   1220000 perm   738 sec   (1652 perm/sec)   p_kst 3.401639e-04   p_cons 2.202205e-01   p_joint 9.352459e-04

Joint ci ratio: 1.165078e-01	ci left: 8.659307e-04	ci right 9.738400e-04	k: 1130	n:1230000
Cons ci ratio: 6.651404e-03	ci left: 2.194696e-01	ci right 2.209350e-01	k: 270848	n:1230000
KS ci ratio: 1.917008e-01	ci left: 3.072664e-04	ci right 3.731726e-04	k: 417	n:1230000
C2orf44   1230000 perm   749 sec   (1643 perm/sec)   p_kst 3.390244e-04   p_cons 2.202016e-01   p_joint 9.186992e-04

Joint ci ratio: 1.161490e-01	ci left: 8.644283e-04	ci right 9.717958e-04	k: 1137	n:1240000
Cons ci ratio: 6.624825e-03	ci left: 2.194572e-01	ci right 2.209167e-01	k: 273031	n:1240000
KS ci ratio: 1.905643e-01	ci left: 3.086278e-04	ci right 3.743881e-04	k: 422	n:1240000
C2orf44   1240000 perm   759 sec   (1634 perm/sec)   p_kst 3.403226e-04   p_cons 2.201863e-01   p_joint 9.169355e-04

Joint ci ratio: 1.156420e-01	ci left: 8.652810e-04	ci right 9.722533e-04	k: 1147	n:1250000
Cons ci ratio: 6.597641e-03	ci left: 2.194930e-01	ci right 2.209467e-01	k: 275274	n:1250000
KS ci ratio: 1.898922e-01	ci left: 3.084445e-04	ci right 3.739072e-04	k: 425	n:1250000
C2orf44   1250000 perm   770 sec   (1623 perm/sec)   p_kst 3.400000e-04   p_cons 2.202192e-01   p_joint 9.176000e-04

Joint ci ratio: 1.151913e-01	ci left: 8.653503e-04	ci right 9.718859e-04	k: 1156	n:1260000
Cons ci ratio: 6.571608e-03	ci left: 2.194854e-01	ci right 2.209333e-01	k: 277463	n:1260000
KS ci ratio: 1.894481e-01	ci left: 3.075084e-04	ci right 3.726022e-04	k: 427	n:1260000
C2orf44   1260000 perm   781 sec   (1614 perm/sec)   p_kst 3.388889e-04   p_cons 2.202087e-01   p_joint 9.174603e-04

Joint ci ratio: 1.148445e-01	ci left: 8.638897e-04	ci right 9.699037e-04	k: 1163	n:1270000
Cons ci ratio: 6.545100e-03	ci left: 2.195189e-01	ci right 2.209611e-01	k: 279704	n:1270000
KS ci ratio: 1.883510e-01	ci left: 3.088379e-04	ci right 3.737913e-04	k: 432	n:1270000
C2orf44   1270000 perm   792 sec   (1604 perm/sec)   p_kst 3.401575e-04   p_cons 2.202394e-01   p_joint 9.157480e-04

Joint ci ratio: 1.177140e-01	ci left: 8.146616e-04	ci right 9.173060e-04	k: 1107	n:1280000
Cons ci ratio: 6.520913e-03	ci left: 2.194465e-01	ci right 2.208829e-01	k: 281810	n:1280000
KS ci ratio: 1.879176e-01	ci left: 3.079140e-04	ci right 3.725071e-04	k: 434	n:1280000
C2orf44   1280000 perm   802 sec   (1596 perm/sec)   p_kst 3.390625e-04   p_cons 2.201641e-01   p_joint 8.648438e-04

Joint ci ratio: 1.169770e-01	ci left: 8.188807e-04	ci right 9.213661e-04	k: 1121	n:1290000
Cons ci ratio: 6.496127e-03	ci left: 2.194209e-01	ci right 2.208517e-01	k: 283975	n:1290000
KS ci ratio: 1.872730e-01	ci left: 3.077435e-04	ci right 3.720541e-04	k: 437	n:1290000
C2orf44   1290000 perm   813 sec   (1587 perm/sec)   p_kst 3.387597e-04   p_cons 2.201357e-01   p_joint 8.689922e-04

Joint ci ratio: 1.168212e-01	ci left: 8.148217e-04	ci right 9.166539e-04	k: 1124	n:1300000
Cons ci ratio: 6.471983e-03	ci left: 2.193765e-01	ci right 2.208017e-01	k: 286115	n:1300000
KS ci ratio: 1.864236e-01	ci left: 3.083092e-04	ci right 3.724128e-04	k: 441	n:1300000
C2orf44   1300000 perm   824 sec   (1578 perm/sec)   p_kst 3.392308e-04   p_cons 2.200885e-01   p_joint 8.646154e-04

Joint ci ratio: 1.095137e-01	ci left: 9.235794e-04	ci right 1.031318e-03	k: 1279	n:1310000
Cons ci ratio: 6.765183e-03	ci left: 2.033186e-01	ci right 2.046995e-01	k: 267251	n:1310000
KS ci ratio: 1.860034e-01	ci left: 3.074112e-04	ci right 3.711678e-04	k: 443	n:1310000
C2orf44   1310000 perm   835 sec   (1569 perm/sec)   p_kst 3.381679e-04   p_cons 2.040084e-01   p_joint 9.763359e-04

Joint ci ratio: 1.091308e-01	ci left: 9.232143e-04	ci right 1.030510e-03	k: 1288	n:1320000
Cons ci ratio: 6.739101e-03	ci left: 2.033408e-01	ci right 2.047165e-01	k: 269317	n:1320000
KS ci ratio: 1.853782e-01	ci left: 3.072495e-04	ci right 3.707342e-04	k: 446	n:1320000
C2orf44   1320000 perm   846 sec   (1561 perm/sec)   p_kst 3.378788e-04   p_cons 2.040280e-01   p_joint 9.757576e-04

Joint ci ratio: 1.085011e-01	ci left: 9.272442e-04	ci right 1.034347e-03	k: 1303	n:1330000
Cons ci ratio: 6.713925e-03	ci left: 2.033334e-01	ci right 2.047039e-01	k: 271344	n:1330000
KS ci ratio: 1.839432e-01	ci left: 3.099592e-04	ci right 3.734528e-04	k: 453	n:1330000
C2orf44   1330000 perm   856 sec   (1553 perm/sec)   p_kst 3.406015e-04   p_cons 2.040180e-01   p_joint 9.796992e-04

Joint ci ratio: 1.080052e-01	ci left: 9.290373e-04	ci right 1.035825e-03	k: 1315	n:1340000
Cons ci ratio: 6.688368e-03	ci left: 2.033582e-01	ci right 2.047236e-01	k: 273414	n:1340000
KS ci ratio: 1.835395e-01	ci left: 3.090700e-04	ci right 3.722270e-04	k: 455	n:1340000
C2orf44   1340000 perm   867 sec   (1545 perm/sec)   p_kst 3.395522e-04   p_cons 2.040403e-01   p_joint 9.813433e-04

Joint ci ratio: 1.086688e-01	ci left: 9.106243e-04	ci right 1.015980e-03	k: 1299	n:1350000
Cons ci ratio: 6.663526e-03	ci left: 2.033619e-01	ci right 2.047223e-01	k: 275456	n:1350000
KS ci ratio: 1.833388e-01	ci left: 3.074873e-04	ci right 3.702445e-04	k: 456	n:1350000
C2orf44   1350000 perm   878 sec   (1537 perm/sec)   p_kst 3.377778e-04   p_cons 2.040415e-01   p_joint 9.622222e-04

Joint ci ratio: 1.099898e-01	ci left: 8.817570e-04	ci right 9.850932e-04	k: 1268	n:1360000
Cons ci ratio: 6.637351e-03	ci left: 2.034442e-01	ci right 2.047997e-01	k: 277605	n:1360000
KS ci ratio: 1.831387e-01	ci left: 3.059279e-04	ci right 3.682911e-04	k: 457	n:1360000
C2orf44   1360000 perm   890 sec   (1529 perm/sec)   p_kst 3.360294e-04   p_cons 2.041213e-01   p_joint 9.323529e-04

Joint ci ratio: 1.096878e-01	ci left: 8.802899e-04	ci right 9.831526e-04	k: 1275	n:1370000
Cons ci ratio: 6.612759e-03	ci left: 2.034625e-01	ci right 2.048132e-01	k: 279668	n:1370000
KS ci ratio: 1.827402e-01	ci left: 3.050878e-04	ci right 3.671295e-04	k: 459	n:1370000
C2orf44   1370000 perm   901 sec   (1521 perm/sec)   p_kst 3.350365e-04   p_cons 2.041372e-01   p_joint 9.306569e-04

Joint ci ratio: 1.093882e-01	ci left: 8.788444e-04	ci right 9.812397e-04	k: 1282	n:1380000
Cons ci ratio: 6.587748e-03	ci left: 2.035147e-01	ci right 2.048605e-01	k: 281778	n:1380000
KS ci ratio: 1.823443e-01	ci left: 3.042601e-04	ci right 3.659846e-04	k: 461	n:1380000
C2orf44   1380000 perm   913 sec   (1512 perm/sec)   p_kst 3.340580e-04   p_cons 2.041870e-01   p_joint 9.289855e-04

Joint ci ratio: 1.088801e-01	ci left: 8.809193e-04	ci right 9.830490e-04	k: 1294	n:1390000
Cons ci ratio: 6.563891e-03	ci left: 2.035229e-01	ci right 2.048639e-01	k: 283828	n:1390000
KS ci ratio: 1.815600e-01	ci left: 3.048178e-04	ci right 3.663602e-04	k: 465	n:1390000
C2orf44   1390000 perm   924 sec   (1505 perm/sec)   p_kst 3.345324e-04   p_cons 2.041928e-01   p_joint 9.309353e-04

Joint ci ratio: 1.083376e-01	ci left: 8.836606e-04	ci right 9.855650e-04	k: 1307	n:1400000
Cons ci ratio: 6.540147e-03	ci left: 2.035382e-01	ci right 2.048744e-01	k: 285888	n:1400000
KS ci ratio: 1.800210e-01	ci left: 3.080963e-04	ci right 3.697159e-04	k: 473	n:1400000
C2orf44   1400000 perm   935 sec   (1497 perm/sec)   p_kst 3.378571e-04   p_cons 2.042057e-01   p_joint 9.335714e-04

Joint ci ratio: 1.078439e-01	ci left: 8.856741e-04	ci right 9.873158e-04	k: 1319	n:1410000
Cons ci ratio: 6.517042e-03	ci left: 2.035342e-01	ci right 2.048656e-01	k: 287921	n:1410000
KS ci ratio: 1.790789e-01	ci left: 3.092979e-04	ci right 3.707991e-04	k: 478	n:1410000
C2orf44   1410000 perm   947 sec   (1489 perm/sec)   p_kst 3.390071e-04   p_cons 2.041993e-01   p_joint 9.354610e-04

Joint ci ratio: 1.085878e-01	ci left: 8.671035e-04	ci right 9.673444e-04	k: 1301	n:1420000
Cons ci ratio: 6.492957e-03	ci left: 2.035914e-01	ci right 2.049183e-01	k: 290041	n:1420000
KS ci ratio: 1.783358e-01	ci left: 3.098107e-04	ci right 3.711306e-04	k: 482	n:1420000
C2orf44   1420000 perm   958 sec   (1482 perm/sec)   p_kst 3.394366e-04   p_cons 2.042542e-01   p_joint 9.161972e-04

Joint ci ratio: 1.082558e-01	ci left: 8.664825e-04	ci right 9.663258e-04	k: 1309	n:1430000
Cons ci ratio: 6.471002e-03	ci left: 2.035542e-01	ci right 2.048764e-01	k: 292027	n:1430000
KS ci ratio: 1.776018e-01	ci left: 3.103168e-04	ci right 3.714570e-04	k: 486	n:1430000
C2orf44   1430000 perm   970 sec   (1475 perm/sec)   p_kst 3.398601e-04   p_cons 2.042147e-01   p_joint 9.153846e-04

Joint ci ratio: 1.079678e-01	ci left: 8.651949e-04	ci right 9.646078e-04	k: 1316	n:1440000
Cons ci ratio: 6.448028e-03	ci left: 2.035800e-01	ci right 2.048976e-01	k: 294103	n:1440000
KS ci ratio: 1.768769e-01	ci left: 3.108164e-04	ci right 3.717783e-04	k: 490	n:1440000
C2orf44   1440000 perm   981 sec   (1467 perm/sec)   p_kst 3.402778e-04   p_cons 2.042382e-01   p_joint 9.138889e-04

Joint ci ratio: 1.079682e-01	ci left: 8.592279e-04	ci right 9.579555e-04	k: 1316	n:1450000
Cons ci ratio: 6.426687e-03	ci left: 2.035352e-01	ci right 2.048481e-01	k: 296077	n:1450000
KS ci ratio: 1.759830e-01	ci left: 3.119688e-04	ci right 3.728147e-04	k: 495	n:1450000
C2orf44   1450000 perm   993 sec   (1460 perm/sec)   p_kst 3.413793e-04   p_cons 2.041910e-01   p_joint 9.075862e-04

Joint ci ratio: 1.080095e-01	ci left: 8.526762e-04	ci right 9.506909e-04	k: 1315	n:1460000
Cons ci ratio: 6.405435e-03	ci left: 2.034971e-01	ci right 2.048054e-01	k: 298060	n:1460000
KS ci ratio: 1.758060e-01	ci left: 3.104868e-04	ci right 3.709762e-04	k: 496	n:1460000
C2orf44   1460000 perm   1005 sec   (1452 perm/sec)   p_kst 3.397260e-04   p_cons 2.041507e-01   p_joint 9.006849e-04

Joint ci ratio: 1.077643e-01	ci left: 8.508472e-04	ci right 9.484154e-04	k: 1321	n:1470000
Cons ci ratio: 6.382896e-03	ci left: 2.035357e-01	ci right 2.048396e-01	k: 300155	n:1470000
KS ci ratio: 1.752779e-01	ci left: 3.103258e-04	ci right 3.705830e-04	k: 499	n:1470000
C2orf44   1470000 perm   1018 sec   (1445 perm/sec)   p_kst 3.394558e-04   p_cons 2.041871e-01   p_joint 8.986395e-04

Joint ci ratio: 1.074397e-01	ci left: 8.503581e-04	ci right 9.475580e-04	k: 1329	n:1480000
Cons ci ratio: 6.361493e-03	ci left: 2.035278e-01	ci right 2.048274e-01	k: 302182	n:1480000
KS ci ratio: 1.742354e-01	ci left: 3.121058e-04	ci right 3.723102e-04	k: 505	n:1480000
C2orf44   1480000 perm   1030 sec   (1437 perm/sec)   p_kst 3.412162e-04   p_cons 2.041770e-01   p_joint 8.979730e-04

Joint ci ratio: 1.081752e-01	ci left: 8.328958e-04	ci right 9.287929e-04	k: 1311	n:1490000
Cons ci ratio: 6.339020e-03	ci left: 2.035858e-01	ci right 2.048811e-01	k: 304307	n:1490000
KS ci ratio: 1.738922e-01	ci left: 3.112949e-04	ci right 3.712122e-04	k: 507	n:1490000
C2orf44   1490000 perm   1042 sec   (1430 perm/sec)   p_kst 3.402685e-04   p_cons 2.042329e-01   p_joint 8.798658e-04

Joint ci ratio: 1.077652e-01	ci left: 8.338298e-04	ci right 9.294475e-04	k: 1321	n:1500000
Cons ci ratio: 6.317665e-03	ci left: 2.035977e-01	ci right 2.048887e-01	k: 306364	n:1500000
KS ci ratio: 1.733810e-01	ci left: 3.111327e-04	ci right 3.708243e-04	k: 510	n:1500000
C2orf44   1500000 perm   1054 sec   (1424 perm/sec)   p_kst 3.400000e-04   p_cons 2.042427e-01   p_joint 8.806667e-04

Joint ci ratio: 1.074407e-01	ci left: 8.334632e-04	ci right 9.287328e-04	k: 1329	n:1510000
Cons ci ratio: 6.296126e-03	ci left: 2.036300e-01	ci right 2.049168e-01	k: 308452	n:1510000
KS ci ratio: 1.725388e-01	ci left: 3.122401e-04	ci right 3.718229e-04	k: 515	n:1510000
C2orf44   1510000 perm   1066 sec   (1416 perm/sec)   p_kst 3.410596e-04   p_cons 2.042728e-01   p_joint 8.801325e-04

Joint ci ratio: 1.076031e-01	ci left: 8.254189e-04	ci right 9.199206e-04	k: 1325	n:1520000
Cons ci ratio: 6.275809e-03	ci left: 2.036100e-01	ci right 2.048925e-01	k: 310461	n:1520000
KS ci ratio: 1.720395e-01	ci left: 3.120745e-04	ci right 3.714354e-04	k: 518	n:1520000
C2orf44   1520000 perm   1079 sec   (1409 perm/sec)   p_kst 3.407895e-04   p_cons 2.042507e-01   p_joint 8.717105e-04

Joint ci ratio: 1.075628e-01	ci left: 8.206599e-04	ci right 9.145794e-04	k: 1326	n:1530000
Cons ci ratio: 6.254644e-03	ci left: 2.036444e-01	ci right 2.049227e-01	k: 312553	n:1530000
KS ci ratio: 1.705666e-01	ci left: 3.156650e-04	ci right 3.751420e-04	k: 527	n:1530000
C2orf44   1530000 perm   1091 sec   (1403 perm/sec)   p_kst 3.444444e-04   p_cons 2.042830e-01   p_joint 8.666667e-04

Joint ci ratio: 1.075631e-01	ci left: 8.153308e-04	ci right 9.086407e-04	k: 1326	n:1540000
Cons ci ratio: 6.234800e-03	ci left: 2.036206e-01	ci right 2.048948e-01	k: 314556	n:1540000
KS ci ratio: 1.699241e-01	ci left: 3.161020e-04	ci right 3.754140e-04	k: 531	n:1540000
C2orf44   1540000 perm   1103 sec   (1396 perm/sec)   p_kst 3.448052e-04   p_cons 2.042571e-01   p_joint 8.610390e-04

Joint ci ratio: 1.070799e-01	ci left: 8.176048e-04	ci right 9.107281e-04	k: 1338	n:1550000
Cons ci ratio: 6.214551e-03	ci left: 2.036281e-01	ci right 2.048981e-01	k: 316607	n:1550000
KS ci ratio: 1.689738e-01	ci left: 3.177694e-04	ci right 3.770269e-04	k: 537	n:1550000
C2orf44   1550000 perm   1116 sec   (1389 perm/sec)   p_kst 3.464516e-04   p_cons 2.042626e-01   p_joint 8.632258e-04

Joint ci ratio: 1.074827e-01	ci left: 8.061252e-04	ci right 8.983082e-04	k: 1328	n:1560000
Cons ci ratio: 6.194279e-03	ci left: 2.036470e-01	ci right 2.049130e-01	k: 318676	n:1560000
KS ci ratio: 1.685047e-01	ci left: 3.175743e-04	ci right 3.766143e-04	k: 540	n:1560000
C2orf44   1560000 perm   1128 sec   (1383 perm/sec)   p_kst 3.461538e-04   p_cons 2.042795e-01   p_joint 8.512821e-04

Joint ci ratio: 1.077266e-01	ci left: 7.972717e-04	ci right 8.886622e-04	k: 1322	n:1570000
Cons ci ratio: 6.175086e-03	ci left: 2.036193e-01	ci right 2.048812e-01	k: 320672	n:1570000
KS ci ratio: 1.681942e-01	ci left: 3.167717e-04	ci right 3.755430e-04	k: 542	n:1570000
C2orf44   1570000 perm   1141 sec   (1376 perm/sec)   p_kst 3.452229e-04   p_cons 2.042497e-01   p_joint 8.420382e-04

Joint ci ratio: 1.071208e-01	ci left: 8.014643e-04	ci right 8.927863e-04	k: 1337	n:1580000
Cons ci ratio: 6.154549e-03	ci left: 2.036722e-01	ci right 2.049302e-01	k: 322795	n:1580000
KS ci ratio: 1.677315e-01	ci left: 3.165858e-04	ci right 3.751446e-04	k: 545	n:1580000
C2orf44   1580000 perm   1153 sec   (1370 perm/sec)   p_kst 3.449367e-04   p_cons 2.043006e-01   p_joint 8.462025e-04

Joint ci ratio: 1.078496e-01	ci left: 7.854069e-04	ci right 8.755468e-04	k: 1319	n:1590000
Cons ci ratio: 6.134595e-03	ci left: 2.037043e-01	ci right 2.049584e-01	k: 324886	n:1590000
KS ci ratio: 1.672726e-01	ci left: 3.164024e-04	ci right 3.747510e-04	k: 548	n:1590000
C2orf44   1590000 perm   1166 sec   (1363 perm/sec)   p_kst 3.446541e-04   p_cons 2.043308e-01   p_joint 8.295597e-04

Joint ci ratio: 1.110982e-01	ci left: 7.342973e-04	ci right 8.212761e-04	k: 1243	n:1600000
Cons ci ratio: 6.115869e-03	ci left: 2.036811e-01	ci right 2.049312e-01	k: 326889	n:1600000
KS ci ratio: 1.662161e-01	ci left: 3.186173e-04	ci right 3.769662e-04	k: 555	n:1600000
C2orf44   1600000 perm   1179 sec   (1357 perm/sec)   p_kst 3.468750e-04   p_cons 2.043056e-01   p_joint 7.768750e-04

Joint ci ratio: 1.105660e-01	ci left: 7.369833e-04	ci right 8.238349e-04	k: 1255	n:1610000
Cons ci ratio: 6.096276e-03	ci left: 2.037134e-01	ci right 2.049597e-01	k: 328981	n:1610000
KS ci ratio: 1.654736e-01	ci left: 3.196150e-04	ci right 3.778592e-04	k: 560	n:1610000
C2orf44   1610000 perm   1192 sec   (1350 perm/sec)   p_kst 3.478261e-04   p_cons 2.043360e-01   p_joint 7.795031e-04

Joint ci ratio: 1.102592e-01	ci left: 7.366357e-04	ci right 8.231897e-04	k: 1262	n:1620000
Cons ci ratio: 6.077181e-03	ci left: 2.037287e-01	ci right 2.049711e-01	k: 331046	n:1620000
KS ci ratio: 1.653265e-01	ci left: 3.182338e-04	ci right 3.761695e-04	k: 561	n:1620000
C2orf44   1620000 perm   1205 sec   (1344 perm/sec)   p_kst 3.462963e-04   p_cons 2.043494e-01   p_joint 7.790123e-04

Joint ci ratio: 1.101287e-01	ci left: 7.339062e-04	ci right 8.200308e-04	k: 1265	n:1630000
Cons ci ratio: 6.058791e-03	ci left: 2.037156e-01	ci right 2.049542e-01	k: 333065	n:1630000
KS ci ratio: 1.648870e-01	ci left: 3.180459e-04	ci right 3.757782e-04	k: 564	n:1630000
C2orf44   1630000 perm   1219 sec   (1338 perm/sec)   p_kst 3.460123e-04   p_cons 2.043344e-01   p_joint 7.760736e-04

Joint ci ratio: 1.097823e-01	ci left: 7.341750e-04	ci right 8.200427e-04	k: 1273	n:1640000
Cons ci ratio: 6.041088e-03	ci left: 2.036746e-01	ci right 2.049094e-01	k: 335038	n:1640000
KS ci ratio: 1.644510e-01	ci left: 3.178605e-04	ci right 3.753915e-04	k: 567	n:1640000
C2orf44   1640000 perm   1232 sec   (1331 perm/sec)   p_kst 3.457317e-04   p_cons 2.042915e-01   p_joint 7.762195e-04

Joint ci ratio: 1.093539e-01	ci left: 7.356200e-04	ci right 8.212994e-04	k: 1283	n:1650000
Cons ci ratio: 6.022674e-03	ci left: 2.036808e-01	ci right 2.049118e-01	k: 337088	n:1650000
KS ci ratio: 1.633048e-01	ci left: 3.205837e-04	ci right 3.781635e-04	k: 575	n:1650000
C2orf44   1650000 perm   1245 sec   (1325 perm/sec)   p_kst 3.484848e-04   p_cons 2.042958e-01   p_joint 7.775758e-04

Joint ci ratio: 1.103915e-01	ci left: 7.171277e-04	ci right 8.014972e-04	k: 1259	n:1660000
Cons ci ratio: 6.004751e-03	ci left: 2.036694e-01	ci right 2.048967e-01	k: 339109	n:1660000
KS ci ratio: 1.627407e-01	ci left: 3.209638e-04	ci right 3.783932e-04	k: 579	n:1660000
C2orf44   1660000 perm   1258 sec   (1319 perm/sec)   p_kst 3.487952e-04   p_cons 2.042825e-01   p_joint 7.584337e-04

Joint ci ratio: 1.101732e-01	ci left: 7.157449e-04	ci right 7.997744e-04	k: 1264	n:1670000
Cons ci ratio: 5.986843e-03	ci left: 2.036660e-01	ci right 2.048895e-01	k: 341143	n:1670000
KS ci ratio: 1.621823e-01	ci left: 3.213397e-04	ci right 3.786199e-04	k: 583	n:1670000
C2orf44   1670000 perm   1272 sec   (1313 perm/sec)   p_kst 3.491018e-04   p_cons 2.042772e-01   p_joint 7.568862e-04

Joint ci ratio: 1.113693e-01	ci left: 6.958580e-04	ci right 7.784978e-04	k: 1237	n:1680000
Cons ci ratio: 5.968766e-03	ci left: 2.036804e-01	ci right 2.049004e-01	k: 343207	n:1680000
KS ci ratio: 1.617674e-01	ci left: 3.211403e-04	ci right 3.782243e-04	k: 586	n:1680000
C2orf44   1680000 perm   1285 sec   (1307 perm/sec)   p_kst 3.488095e-04   p_cons 2.042899e-01   p_joint 7.363095e-04

Joint ci ratio: 9.854095e-02	ci left: 8.893954e-04	ci right 9.821510e-04	k: 1580	n:1690000
Cons ci ratio: 5.951037e-03	ci left: 2.036847e-01	ci right 2.049010e-01	k: 345254	n:1690000
KS ci ratio: 1.609468e-01	ci left: 3.226470e-04	ci right 3.796798e-04	k: 592	n:1690000
C2orf44   1690000 perm   1298 sec   (1302 perm/sec)   p_kst 3.502959e-04   p_cons 2.042923e-01   p_joint 9.349112e-04

Joint ci ratio: 9.832360e-02	ci left: 8.881799e-04	ci right 9.805927e-04	k: 1587	n:1700000
Cons ci ratio: 5.934055e-03	ci left: 2.036565e-01	ci right 2.048692e-01	k: 347246	n:1700000
KS ci ratio: 1.604067e-01	ci left: 3.230075e-04	ci right 3.798938e-04	k: 596	n:1700000
C2orf44   1700000 perm   1312 sec   (1296 perm/sec)   p_kst 3.505882e-04   p_cons 2.042624e-01   p_joint 9.335294e-04

Joint ci ratio: 9.807690e-02	ci left: 8.875493e-04	ci right 9.796515e-04	k: 1595	n:1710000
Cons ci ratio: 5.916642e-03	ci left: 2.036603e-01	ci right 2.048694e-01	k: 349292	n:1710000
KS ci ratio: 1.598720e-01	ci left: 3.233640e-04	ci right 3.801050e-04	k: 600	n:1710000
C2orf44   1710000 perm   1326 sec   (1289 perm/sec)   p_kst 3.508772e-04   p_cons 2.042643e-01   p_joint 9.327485e-04

Joint ci ratio: 9.780154e-02	ci left: 8.874935e-04	ci right 9.793165e-04	k: 1604	n:1720000
Cons ci ratio: 5.898570e-03	ci left: 2.037087e-01	ci right 2.049144e-01	k: 351415	n:1720000
KS ci ratio: 1.594745e-01	ci left: 3.231584e-04	ci right 3.797090e-04	k: 603	n:1720000
C2orf44   1720000 perm   1340 sec   (1283 perm/sec)   p_kst 3.505814e-04   p_cons 2.043110e-01   p_joint 9.325581e-04

Joint ci ratio: 9.755874e-02	ci left: 8.868748e-04	ci right 9.783929e-04	k: 1612	n:1730000
Cons ci ratio: 5.881300e-03	ci left: 2.037213e-01	ci right 2.049236e-01	k: 353477	n:1730000
KS ci ratio: 1.588184e-01	ci left: 3.240656e-04	ci right 3.805193e-04	k: 608	n:1730000
C2orf44   1730000 perm   1354 sec   (1278 perm/sec)   p_kst 3.514451e-04   p_cons 2.043220e-01   p_joint 9.317919e-04

Joint ci ratio: 9.838669e-02	ci left: 8.666403e-04	ci right 9.568732e-04	k: 1585	n:1740000
Cons ci ratio: 5.863404e-03	ci left: 2.037769e-01	ci right 2.049758e-01	k: 355614	n:1740000
KS ci ratio: 1.581704e-01	ci left: 3.249627e-04	ci right 3.813198e-04	k: 613	n:1740000
C2orf44   1740000 perm   1368 sec   (1272 perm/sec)   p_kst 3.522989e-04   p_cons 2.043759e-01   p_joint 9.109195e-04

Joint ci ratio: 9.942771e-02	ci left: 8.432969e-04	ci right 9.320825e-04	k: 1552	n:1750000
Cons ci ratio: 5.845926e-03	ci left: 2.038176e-01	ci right 2.050131e-01	k: 357726	n:1750000
KS ci ratio: 1.576576e-01	ci left: 3.253012e-04	ci right 3.815168e-04	k: 617	n:1750000
C2orf44   1750000 perm   1383 sec   (1266 perm/sec)   p_kst 3.525714e-04   p_cons 2.044149e-01   p_joint 8.868571e-04

Joint ci ratio: 1.003703e-01	ci left: 8.224394e-04	ci right 9.098983e-04	k: 1523	n:1760000
Cons ci ratio: 5.830152e-03	ci left: 2.037715e-01	ci right 2.049636e-01	k: 359686	n:1760000
KS ci ratio: 1.572764e-01	ci left: 3.250903e-04	ci right 3.811207e-04	k: 620	n:1760000
C2orf44   1760000 perm   1397 sec   (1260 perm/sec)   p_kst 3.522727e-04   p_cons 2.043670e-01   p_joint 8.653409e-04

Joint ci ratio: 1.002062e-01	ci left: 8.205468e-04	ci right 9.076533e-04	k: 1528	n:1770000
Cons ci ratio: 5.813040e-03	ci left: 2.038078e-01	ci right 2.049965e-01	k: 361791	n:1770000
KS ci ratio: 1.568979e-01	ci left: 3.248819e-04	ci right 3.807290e-04	k: 623	n:1770000
C2orf44   1770000 perm   1411 sec   (1255 perm/sec)   p_kst 3.519774e-04   p_cons 2.044017e-01   p_joint 8.632768e-04

Joint ci ratio: 1.000755e-01	ci left: 8.181279e-04	ci right 9.048577e-04	k: 1532	n:1780000
Cons ci ratio: 5.797820e-03	ci left: 2.037461e-01	ci right 2.049313e-01	k: 363722	n:1780000
KS ci ratio: 1.567724e-01	ci left: 3.235964e-04	ci right 3.791739e-04	k: 624	n:1780000
C2orf44   1780000 perm   1425 sec   (1249 perm/sec)   p_kst 3.505618e-04   p_cons 2.043382e-01   p_joint 8.606742e-04

Joint ci ratio: 9.971831e-02	ci left: 8.195491e-04	ci right 9.061013e-04	k: 1543	n:1790000
Cons ci ratio: 5.781298e-03	ci left: 2.037648e-01	ci right 2.049468e-01	k: 365796	n:1790000
KS ci ratio: 1.560252e-01	ci left: 3.250094e-04	ci right 3.805387e-04	k: 630	n:1790000
C2orf44   1790000 perm   1439 sec   (1244 perm/sec)   p_kst 3.519553e-04   p_cons 2.043553e-01   p_joint 8.620112e-04

Joint ci ratio: 9.952519e-02	ci left: 8.182463e-04	ci right 9.044838e-04	k: 1549	n:1800000
Cons ci ratio: 5.765823e-03	ci left: 2.037323e-01	ci right 2.049109e-01	k: 367778	n:1800000
KS ci ratio: 1.556556e-01	ci left: 3.248055e-04	ci right 3.801562e-04	k: 633	n:1800000
C2orf44   1800000 perm   1454 sec   (1238 perm/sec)   p_kst 3.516667e-04   p_cons 2.043211e-01   p_joint 8.605556e-04

Joint ci ratio: 9.917384e-02	ci left: 8.196519e-04	ci right 9.057149e-04	k: 1560	n:1810000
Cons ci ratio: 5.750726e-03	ci left: 2.036858e-01	ci right 2.048610e-01	k: 369734	n:1810000
KS ci ratio: 1.552887e-01	ci left: 3.246040e-04	ci right 3.797777e-04	k: 636	n:1810000
C2orf44   1810000 perm   1468 sec   (1233 perm/sec)   p_kst 3.513812e-04   p_cons 2.042729e-01   p_joint 8.618785e-04

Joint ci ratio: 9.904715e-02	ci left: 8.172916e-04	ci right 9.029908e-04	k: 1564	n:1820000
Cons ci ratio: 5.734331e-03	ci left: 2.037199e-01	ci right 2.048920e-01	k: 371836	n:1820000
KS ci ratio: 1.549243e-01	ci left: 3.244048e-04	ci right 3.794033e-04	k: 639	n:1820000
C2orf44   1820000 perm   1482 sec   (1228 perm/sec)   p_kst 3.510989e-04   p_cons 2.043055e-01   p_joint 8.593407e-04

Joint ci ratio: 9.860693e-02	ci left: 8.202868e-04	ci right 9.058956e-04	k: 1578	n:1830000
Cons ci ratio: 5.718796e-03	ci left: 2.037128e-01	ci right 2.048816e-01	k: 373863	n:1830000
KS ci ratio: 1.542031e-01	ci left: 3.257840e-04	ci right 3.807355e-04	k: 645	n:1830000
C2orf44   1830000 perm   1497 sec   (1222 perm/sec)   p_kst 3.524590e-04   p_cons 2.042967e-01   p_joint 8.622951e-04

Joint ci ratio: 9.832710e-02	ci left: 8.205996e-04	ci right 9.059840e-04	k: 1587	n:1840000
Cons ci ratio: 5.702634e-03	ci left: 2.037486e-01	ci right 2.049143e-01	k: 375969	n:1840000
KS ci ratio: 1.540840e-01	ci left: 3.245359e-04	ci right 3.792307e-04	k: 646	n:1840000
C2orf44   1840000 perm   1512 sec   (1217 perm/sec)   p_kst 3.510870e-04   p_cons 2.043310e-01   p_joint 8.625000e-04

Joint ci ratio: 1.002409e-01	ci left: 7.845360e-04	ci right 8.678502e-04	k: 1527	n:1850000
Cons ci ratio: 5.686995e-03	ci left: 2.037619e-01	ci right 2.049245e-01	k: 378034	n:1850000
KS ci ratio: 1.534920e-01	ci left: 3.253804e-04	ci right 3.799874e-04	k: 651	n:1850000
C2orf44   1850000 perm   1526 sec   (1212 perm/sec)   p_kst 3.518919e-04   p_cons 2.043427e-01   p_joint 8.254054e-04

Joint ci ratio: 9.997950e-02	ci left: 7.845114e-04	ci right 8.675931e-04	k: 1535	n:1860000
Cons ci ratio: 5.671991e-03	ci left: 2.037460e-01	ci right 2.049055e-01	k: 380045	n:1860000
KS ci ratio: 1.532571e-01	ci left: 3.246650e-04	ci right 3.790610e-04	k: 653	n:1860000
C2orf44   1860000 perm   1541 sec   (1207 perm/sec)   p_kst 3.510753e-04   p_cons 2.043253e-01   p_joint 8.252688e-04

Joint ci ratio: 9.164008e-02	ci left: 9.327346e-04	ci right 1.022833e-03	k: 1827	n:1870000
Cons ci ratio: 5.656129e-03	ci left: 2.037864e-01	ci right 2.049428e-01	k: 382161	n:1870000
KS ci ratio: 1.529069e-01	ci left: 3.244717e-04	ci right 3.786996e-04	k: 656	n:1870000
C2orf44   1870000 perm   1557 sec   (1201 perm/sec)   p_kst 3.508021e-04   p_cons 2.043642e-01   p_joint 9.770053e-04

Joint ci ratio: 9.134072e-02	ci left: 9.340102e-04	ci right 1.023921e-03	k: 1839	n:1880000
Cons ci ratio: 5.641136e-03	ci left: 2.037839e-01	ci right 2.049372e-01	k: 384197	n:1880000
KS ci ratio: 1.522133e-01	ci left: 3.258154e-04	ci right 3.799985e-04	k: 662	n:1880000
C2orf44   1880000 perm   1571 sec   (1196 perm/sec)   p_kst 3.521277e-04   p_cons 2.043601e-01   p_joint 9.781915e-04

Joint ci ratio: 9.136581e-02	ci left: 9.285512e-04	ci right 1.017963e-03	k: 1838	n:1890000
Cons ci ratio: 5.626272e-03	ci left: 2.037809e-01	ci right 2.049311e-01	k: 386232	n:1890000
KS ci ratio: 1.516425e-01	ci left: 3.266365e-04	ci right 3.807339e-04	k: 667	n:1890000
C2orf44   1890000 perm   1587 sec   (1191 perm/sec)   p_kst 3.529101e-04   p_cons 2.043556e-01   p_joint 9.724868e-04

Joint ci ratio: 9.097077e-02	ci left: 9.318933e-04	ci right 1.021218e-03	k: 1854	n:1900000
Cons ci ratio: 5.611251e-03	ci left: 2.037937e-01	ci right 2.049409e-01	k: 388297	n:1900000
KS ci ratio: 1.510781e-01	ci left: 3.274493e-04	ci right 3.814612e-04	k: 672	n:1900000
C2orf44   1900000 perm   1602 sec   (1186 perm/sec)   p_kst 3.536842e-04   p_cons 2.043668e-01   p_joint 9.757895e-04

Joint ci ratio: 9.067790e-02	ci left: 9.331543e-04	ci right 1.022297e-03	k: 1866	n:1910000
Cons ci ratio: 5.596270e-03	ci left: 2.038110e-01	ci right 2.049553e-01	k: 390371	n:1910000
KS ci ratio: 1.504090e-01	ci left: 3.287578e-04	ci right 3.827237e-04	k: 678	n:1910000
C2orf44   1910000 perm   1617 sec   (1181 perm/sec)   p_kst 3.549738e-04   p_cons 2.043827e-01   p_joint 9.769634e-04

Joint ci ratio: 9.036376e-02	ci left: 9.349117e-04	ci right 1.023896e-03	k: 1879	n:1920000
Cons ci ratio: 5.582248e-03	ci left: 2.037793e-01	ci right 2.049205e-01	k: 392351	n:1920000
KS ci ratio: 1.499679e-01	ci left: 3.290505e-04	ci right 3.828919e-04	k: 682	n:1920000
C2orf44   1920000 perm   1632 sec   (1176 perm/sec)   p_kst 3.552083e-04   p_cons 2.043495e-01   p_joint 9.786458e-04

Joint ci ratio: 9.014826e-02	ci left: 9.346256e-04	ci right 1.023359e-03	k: 1888	n:1930000
Cons ci ratio: 5.567993e-03	ci left: 2.037676e-01	ci right 2.049058e-01	k: 394369	n:1930000
KS ci ratio: 1.495307e-01	ci left: 3.293405e-04	ci right 3.830582e-04	k: 686	n:1930000
C2orf44   1930000 perm   1648 sec   (1171 perm/sec)   p_kst 3.554404e-04   p_cons 2.043363e-01   p_joint 9.782383e-04

Joint ci ratio: 9.019629e-02	ci left: 9.288001e-04	ci right 1.017030e-03	k: 1886	n:1940000
Cons ci ratio: 5.553478e-03	ci left: 2.037776e-01	ci right 2.049129e-01	k: 396429	n:1940000
KS ci ratio: 1.487745e-01	ci left: 3.311165e-04	ci right 3.848264e-04	k: 693	n:1940000
C2orf44   1940000 perm   1663 sec   (1167 perm/sec)   p_kst 3.572165e-04   p_cons 2.043448e-01   p_joint 9.721649e-04

Joint ci ratio: 8.998198e-02	ci left: 9.285484e-04	ci right 1.016534e-03	k: 1895	n:1950000
Cons ci ratio: 5.538691e-03	ci left: 2.038101e-01	ci right 2.049426e-01	k: 398533	n:1950000
KS ci ratio: 1.484540e-01	ci left: 3.308997e-04	ci right 3.844486e-04	k: 696	n:1950000
C2orf44   1950000 perm   1678 sec   (1162 perm/sec)   p_kst 3.569231e-04   p_cons 2.043759e-01   p_joint 9.717949e-04

Joint ci ratio: 8.976919e-02	ci left: 9.282996e-04	ci right 1.016043e-03	k: 1904	n:1960000
Cons ci ratio: 5.524420e-03	ci left: 2.038188e-01	ci right 2.049484e-01	k: 400591	n:1960000
KS ci ratio: 1.482415e-01	ci left: 3.301940e-04	ci right 3.835454e-04	k: 698	n:1960000
C2orf44   1960000 perm   1693 sec   (1158 perm/sec)   p_kst 3.561224e-04   p_cons 2.043832e-01   p_joint 9.714286e-04

Joint ci ratio: 8.941772e-02	ci left: 9.310310e-04	ci right 1.018670e-03	k: 1919	n:1970000
Cons ci ratio: 5.509855e-03	ci left: 2.038513e-01	ci right 2.049780e-01	k: 402696	n:1970000
KS ci ratio: 1.478192e-01	ci left: 3.304731e-04	ci right 3.837041e-04	k: 702	n:1970000
C2orf44   1970000 perm   1708 sec   (1153 perm/sec)   p_kst 3.563452e-04   p_cons 2.044142e-01   p_joint 9.741117e-04

Joint ci ratio: 8.904732e-02	ci left: 9.342294e-04	ci right 1.021786e-03	k: 1935	n:1980000
Cons ci ratio: 5.496190e-03	ci left: 2.038370e-01	ci right 2.049609e-01	k: 404709	n:1980000
KS ci ratio: 1.471923e-01	ci left: 3.317225e-04	ci right 3.849082e-04	k: 708	n:1980000
C2orf44   1980000 perm   1724 sec   (1149 perm/sec)   p_kst 3.575758e-04   p_cons 2.043985e-01   p_joint 9.772727e-04

Joint ci ratio: 8.881823e-02	ci left: 9.344482e-04	ci right 1.021788e-03	k: 1945	n:1990000
Cons ci ratio: 5.482032e-03	ci left: 2.038580e-01	ci right 2.049791e-01	k: 406792	n:1990000
KS ci ratio: 1.469852e-01	ci left: 3.310236e-04	ci right 3.840160e-04	k: 710	n:1990000
C2orf44   1990000 perm   1739 sec   (1144 perm/sec)   p_kst 3.567839e-04   p_cons 2.044181e-01   p_joint 9.773869e-04

Joint ci ratio: 8.863626e-02	ci left: 9.336872e-04	ci right 1.020768e-03	k: 1953	n:2000000
Cons ci ratio: 5.467698e-03	ci left: 2.038957e-01	ci right 2.050141e-01	k: 408909	n:2000000
KS ci ratio: 1.466761e-01	ci left: 3.308134e-04	ci right 3.836510e-04	k: 713	n:2000000
C2orf44   2000000 perm   1755 sec   (1140 perm/sec)   p_kst 3.565000e-04   p_cons 2.044545e-01   p_joint 9.765000e-04

Joint ci ratio: 8.847798e-02	ci left: 9.324474e-04	ci right 1.019249e-03	k: 1960	n:2010000
Cons ci ratio: 5.453592e-03	ci left: 2.039262e-01	ci right 2.050418e-01	k: 411012	n:2010000
KS ci ratio: 1.464711e-01	ci left: 3.301261e-04	ci right 3.827738e-04	k: 715	n:2010000
C2orf44   2010000 perm   1771 sec   (1135 perm/sec)   p_kst 3.557214e-04   p_cons 2.044836e-01   p_joint 9.751244e-04

Joint ci ratio: 8.872764e-02	ci left: 9.225062e-04	ci right 1.008638e-03	k: 1949	n:2020000
Cons ci ratio: 5.440050e-03	ci left: 2.039291e-01	ci right 2.050420e-01	k: 413060	n:2020000
KS ci ratio: 1.460637e-01	ci left: 3.303995e-04	ci right 3.829315e-04	k: 719	n:2020000
C2orf44   2020000 perm   1787 sec   (1131 perm/sec)   p_kst 3.559406e-04   p_cons 2.044851e-01   p_joint 9.648515e-04

Joint ci ratio: 9.235429e-02	ci left: 8.457411e-04	ci right 9.281073e-04	k: 1799	n:2030000
Cons ci ratio: 5.426749e-03	ci left: 2.039237e-01	ci right 2.050338e-01	k: 415091	n:2030000
KS ci ratio: 1.459625e-01	ci left: 3.292465e-04	ci right 3.815557e-04	k: 720	n:2030000
C2orf44   2030000 perm   1803 sec   (1126 perm/sec)   p_kst 3.546798e-04   p_cons 2.044783e-01   p_joint 8.862069e-04

Joint ci ratio: 9.220082e-02	ci left: 8.444686e-04	ci right 9.265668e-04	k: 1805	n:2040000
Cons ci ratio: 5.412859e-03	ci left: 2.039594e-01	ci right 2.050669e-01	k: 417206	n:2040000
KS ci ratio: 1.455592e-01	ci left: 3.295219e-04	ci right 3.817176e-04	k: 724	n:2040000
C2orf44   2040000 perm   1819 sec   (1121 perm/sec)   p_kst 3.549020e-04   p_cons 2.045127e-01   p_joint 8.848039e-04

Joint ci ratio: 9.194658e-02	ci left: 8.451149e-04	ci right 9.270373e-04	k: 1815	n:2050000
Cons ci ratio: 5.399642e-03	ci left: 2.039607e-01	ci right 2.050655e-01	k: 419251	n:2050000
KS ci ratio: 1.451593e-01	ci left: 3.297947e-04	ci right 3.818777e-04	k: 728	n:2050000
C2orf44   2050000 perm   1835 sec   (1117 perm/sec)   p_kst 3.551220e-04   p_cons 2.045127e-01   p_joint 8.853659e-04

Joint ci ratio: 9.227795e-02	ci left: 8.348469e-04	ci right 9.160813e-04	k: 1802	n:2060000
Cons ci ratio: 5.386352e-03	ci left: 2.039722e-01	ci right 2.050743e-01	k: 421317	n:2060000
KS ci ratio: 1.450600e-01	ci left: 3.286615e-04	ci right 3.805270e-04	k: 729	n:2060000
C2orf44   2060000 perm   1851 sec   (1113 perm/sec)   p_kst 3.538835e-04   p_cons 2.045228e-01   p_joint 8.747573e-04

Joint ci ratio: 9.204850e-02	ci left: 8.350615e-04	ci right 9.161038e-04	k: 1811	n:2070000
Cons ci ratio: 5.373344e-03	ci left: 2.039724e-01	ci right 2.050719e-01	k: 423360	n:2070000
KS ci ratio: 1.446642e-01	ci left: 3.289361e-04	ci right 3.806910e-04	k: 733	n:2070000
C2orf44   2070000 perm   1868 sec   (1108 perm/sec)   p_kst 3.541063e-04   p_cons 2.045217e-01   p_joint 8.748792e-04

Joint ci ratio: 9.266494e-02	ci left: 8.197745e-04	ci right 8.998949e-04	k: 1787	n:2080000
Cons ci ratio: 5.359534e-03	ci left: 2.040270e-01	ci right 2.051239e-01	k: 425516	n:2080000
KS ci ratio: 1.441739e-01	ci left: 3.296717e-04	ci right 3.813514e-04	k: 738	n:2080000
C2orf44   2080000 perm   1884 sec   (1104 perm/sec)   p_kst 3.548077e-04   p_cons 2.045750e-01   p_joint 8.591346e-04

Joint ci ratio: 9.271705e-02	ci left: 8.149173e-04	ci right 8.946102e-04	k: 1785	n:2090000
Cons ci ratio: 5.346782e-03	ci left: 2.040231e-01	ci right 2.051174e-01	k: 427551	n:2090000
KS ci ratio: 1.437853e-01	ci left: 3.299393e-04	ci right 3.815095e-04	k: 742	n:2090000
C2orf44   2090000 perm   1900 sec   (1100 perm/sec)   p_kst 3.550239e-04   p_cons 2.045699e-01   p_joint 8.540670e-04

Joint ci ratio: 9.263940e-02	ci left: 8.124321e-04	ci right 8.918119e-04	k: 1788	n:2100000
Cons ci ratio: 5.334408e-03	ci left: 2.040018e-01	ci right 2.050933e-01	k: 429549	n:2100000
KS ci ratio: 1.431126e-01	ci left: 3.315819e-04	ci right 3.831457e-04	k: 749	n:2100000
C2orf44   2100000 perm   1917 sec   (1096 perm/sec)   p_kst 3.566667e-04   p_cons 2.045471e-01   p_joint 8.514286e-04

Joint ci ratio: 9.227891e-02	ci left: 8.150634e-04	ci right 8.943737e-04	k: 1802	n:2110000
Cons ci ratio: 5.321214e-03	ci left: 2.040360e-01	ci right 2.051250e-01	k: 431664	n:2110000
KS ci ratio: 1.427324e-01	ci left: 3.318383e-04	ci right 3.832933e-04	k: 753	n:2110000
C2orf44   2110000 perm   1933 sec   (1091 perm/sec)   p_kst 3.568720e-04   p_cons 2.045801e-01   p_joint 8.540284e-04

Joint ci ratio: 9.248468e-02	ci left: 8.075323e-04	ci right 8.862944e-04	k: 1794	n:2120000
Cons ci ratio: 5.308693e-03	ci left: 2.040345e-01	ci right 2.051210e-01	k: 433704	n:2120000
KS ci ratio: 1.423553e-01	ci left: 3.320926e-04	ci right 3.834394e-04	k: 757	n:2120000
C2orf44   2120000 perm   1950 sec   (1087 perm/sec)   p_kst 3.570755e-04   p_cons 2.045774e-01   p_joint 8.462264e-04

Joint ci ratio: 9.238190e-02	ci left: 8.055755e-04	ci right 8.840547e-04	k: 1798	n:2130000
Cons ci ratio: 5.296147e-03	ci left: 2.040401e-01	ci right 2.051241e-01	k: 435759	n:2130000
KS ci ratio: 1.419812e-01	ci left: 3.323446e-04	ci right 3.835839e-04	k: 761	n:2130000
C2orf44   2130000 perm   1967 sec   (1083 perm/sec)   p_kst 3.572770e-04   p_cons 2.045817e-01   p_joint 8.441315e-04

Joint ci ratio: 9.220273e-02	ci left: 8.050067e-04	ci right 8.832702e-04	k: 1805	n:2140000
Cons ci ratio: 5.283552e-03	ci left: 2.040541e-01	ci right 2.051355e-01	k: 437832	n:2140000
KS ci ratio: 1.418882e-01	ci left: 3.312422e-04	ci right 3.822753e-04	k: 762	n:2140000
C2orf44   2140000 perm   1983 sec   (1079 perm/sec)   p_kst 3.560748e-04   p_cons 2.045944e-01   p_joint 8.434579e-04

Joint ci ratio: 9.205000e-02	ci left: 8.039888e-04	ci right 8.820169e-04	k: 1811	n:2150000
Cons ci ratio: 5.271649e-03	ci left: 2.040307e-01	ci right 2.051096e-01	k: 439825	n:2150000
KS ci ratio: 1.417026e-01	ci left: 3.305988e-04	ci right 3.814605e-04	k: 764	n:2150000
C2orf44   2150000 perm   2000 sec   (1075 perm/sec)   p_kst 3.553488e-04   p_cons 2.045698e-01   p_joint 8.423256e-04

Joint ci ratio: 9.189803e-02	ci left: 8.029805e-04	ci right 8.807752e-04	k: 1817	n:2160000
Cons ci ratio: 5.259243e-03	ci left: 2.040437e-01	ci right 2.051201e-01	k: 441896	n:2160000
KS ci ratio: 1.413336e-01	ci left: 3.308545e-04	ci right 3.816118e-04	k: 768	n:2160000
C2orf44   2160000 perm   2017 sec   (1071 perm/sec)   p_kst 3.555556e-04   p_cons 2.045815e-01   p_joint 8.412037e-04

Joint ci ratio: 9.169650e-02	ci left: 8.028822e-04	ci right 8.804876e-04	k: 1825	n:2170000
Cons ci ratio: 5.247094e-03	ci left: 2.040459e-01	ci right 2.051198e-01	k: 443944	n:2170000
KS ci ratio: 1.408763e-01	ci left: 3.315527e-04	ci right 3.822387e-04	k: 773	n:2170000
C2orf44   2170000 perm   2034 sec   (1067 perm/sec)   p_kst 3.562212e-04   p_cons 2.045825e-01   p_joint 8.410138e-04

Joint ci ratio: 9.144641e-02	ci left: 8.036813e-04	ci right 8.811408e-04	k: 1835	n:2180000
Cons ci ratio: 5.235620e-03	ci left: 2.040115e-01	ci right 2.050829e-01	k: 445912	n:2180000
KS ci ratio: 1.403334e-01	ci left: 3.326873e-04	ci right 3.833343e-04	k: 779	n:2180000
C2orf44   2180000 perm   2051 sec   (1063 perm/sec)   p_kst 3.573394e-04   p_cons 2.045468e-01   p_joint 8.417431e-04

Joint ci ratio: 9.109963e-02	ci left: 8.062584e-04	ci right 8.836558e-04	k: 1849	n:2190000
Cons ci ratio: 5.223613e-03	ci left: 2.040152e-01	ci right 2.050842e-01	k: 447963	n:2190000
KS ci ratio: 1.396191e-01	ci left: 3.346932e-04	ci right 3.853647e-04	k: 787	n:2190000
C2orf44   2190000 perm   2068 sec   (1059 perm/sec)   p_kst 3.593607e-04   p_cons 2.045493e-01   p_joint 8.442922e-04

Joint ci ratio: 9.087883e-02	ci left: 8.065914e-04	ci right 8.838232e-04	k: 1858	n:2200000
Cons ci ratio: 5.211564e-03	ci left: 2.040267e-01	ci right 2.050932e-01	k: 450031	n:2200000
KS ci ratio: 1.393541e-01	ci left: 3.344879e-04	ci right 3.850243e-04	k: 790	n:2200000
C2orf44   2200000 perm   2085 sec   (1055 perm/sec)   p_kst 3.590909e-04   p_cons 2.045595e-01   p_joint 8.445455e-04

Joint ci ratio: 9.073257e-02	ci left: 8.055949e-04	ci right 8.826006e-04	k: 1864	n:2210000
Cons ci ratio: 5.199605e-03	ci left: 2.040376e-01	ci right 2.051017e-01	k: 452098	n:2210000
KS ci ratio: 1.390906e-01	ci left: 3.342846e-04	ci right 3.846868e-04	k: 793	n:2210000
C2orf44   2210000 perm   2103 sec   (1051 perm/sec)   p_kst 3.588235e-04   p_cons 2.045692e-01   p_joint 8.434389e-04

Joint ci ratio: 9.200042e-02	ci left: 7.795175e-04	ci right 8.551277e-04	k: 1813	n:2220000
Cons ci ratio: 5.187390e-03	ci left: 2.040695e-01	ci right 2.051313e-01	k: 454212	n:2220000
KS ci ratio: 1.387415e-01	ci left: 3.345180e-04	ci right 3.848184e-04	k: 797	n:2220000
C2orf44   2220000 perm   2120 sec   (1047 perm/sec)   p_kst 3.590090e-04   p_cons 2.046000e-01   p_joint 8.166667e-04

Joint ci ratio: 9.217876e-02	ci left: 7.729551e-04	ci right 8.480819e-04	k: 1806	n:2230000
Cons ci ratio: 5.175832e-03	ci left: 2.040653e-01	ci right 2.051247e-01	k: 456246	n:2230000
KS ci ratio: 1.381369e-01	ci left: 3.360482e-04	ci right 3.863404e-04	k: 804	n:2230000
C2orf44   2230000 perm   2137 sec   (1043 perm/sec)   p_kst 3.605381e-04   p_cons 2.045946e-01   p_joint 8.098655e-04

Joint ci ratio: 9.184886e-02	ci left: 7.751745e-04	ci right 8.502329e-04	k: 1819	n:2240000
Cons ci ratio: 5.164244e-03	ci left: 2.040679e-01	ci right 2.051249e-01	k: 458295	n:2240000
KS ci ratio: 1.377949e-01	ci left: 3.362721e-04	ci right 3.864629e-04	k: 808	n:2240000
C2orf44   2240000 perm   2155 sec   (1040 perm/sec)   p_kst 3.607143e-04   p_cons 2.045960e-01   p_joint 8.120536e-04

Joint ci ratio: 9.187429e-02	ci left: 7.712950e-04	ci right 8.459995e-04	k: 1818	n:2250000
Cons ci ratio: 5.152945e-03	ci left: 2.040571e-01	ci right 2.051117e-01	k: 460314	n:2250000
KS ci ratio: 1.375402e-01	ci left: 3.360650e-04	ci right 3.861246e-04	k: 811	n:2250000
C2orf44   2250000 perm   2172 sec   (1036 perm/sec)   p_kst 3.604444e-04   p_cons 2.045840e-01   p_joint 8.080000e-04

Joint ci ratio: 9.192505e-02	ci left: 7.670175e-04	ci right 8.413509e-04	k: 1816	n:2260000
Cons ci ratio: 5.142356e-03	ci left: 2.040061e-01	ci right 2.050583e-01	k: 462242	n:2260000
KS ci ratio: 1.372868e-01	ci left: 3.358598e-04	ci right 3.857891e-04	k: 814	n:2260000
C2orf44   2260000 perm   2190 sec   (1032 perm/sec)   p_kst 3.601770e-04   p_cons 2.045319e-01   p_joint 8.035398e-04

Joint ci ratio: 9.182411e-02	ci left: 7.653601e-04	ci right 8.394472e-04	k: 1820	n:2270000
Cons ci ratio: 5.130651e-03	ci left: 2.040305e-01	ci right 2.050804e-01	k: 464340	n:2270000
KS ci ratio: 1.369511e-01	ci left: 3.360819e-04	ci right 3.859121e-04	k: 818	n:2270000
C2orf44   2270000 perm   2208 sec   (1028 perm/sec)   p_kst 3.603524e-04   p_cons 2.045551e-01   p_joint 8.017621e-04

Joint ci ratio: 9.241018e-02	ci left: 7.521477e-04	ci right 8.254456e-04	k: 1797	n:2280000
Cons ci ratio: 5.119439e-03	ci left: 2.040283e-01	ci right 2.050759e-01	k: 466378	n:2280000
KS ci ratio: 1.365350e-01	ci left: 3.367258e-04	ci right 3.864874e-04	k: 823	n:2280000
C2orf44   2280000 perm   2226 sec   (1024 perm/sec)   p_kst 3.609649e-04   p_cons 2.045518e-01   p_joint 7.881579e-04

Joint ci ratio: 9.215422e-02	ci left: 7.531293e-04	ci right 8.263086e-04	k: 1807	n:2290000
Cons ci ratio: 5.108472e-03	ci left: 2.040153e-01	ci right 2.050606e-01	k: 468391	n:2290000
KS ci ratio: 1.363696e-01	ci left: 3.360989e-04	ci right 3.857029e-04	k: 825	n:2290000
C2orf44   2290000 perm   2244 sec   (1021 perm/sec)   p_kst 3.602620e-04   p_cons 2.045376e-01   p_joint 7.890830e-04

Joint ci ratio: 9.313913e-02	ci left: 7.337155e-04	ci right 8.058119e-04	k: 1769	n:2300000
Cons ci ratio: 5.097343e-03	ci left: 2.040171e-01	ci right 2.050601e-01	k: 470438	n:2300000
KS ci ratio: 1.360406e-01	ci left: 3.363175e-04	ci right 3.858243e-04	k: 829	n:2300000
C2orf44   2300000 perm   2261 sec   (1017 perm/sec)   p_kst 3.604348e-04   p_cons 2.045383e-01   p_joint 7.691304e-04

Joint ci ratio: 9.351011e-02	ci left: 7.246199e-04	ci right 7.961217e-04	k: 1755	n:2310000
Cons ci ratio: 5.086761e-03	ci left: 2.039887e-01	ci right 2.050294e-01	k: 472415	n:2310000
KS ci ratio: 1.357140e-01	ci left: 3.365343e-04	ci right 3.859445e-04	k: 833	n:2310000
C2orf44   2310000 perm   2280 sec   (1013 perm/sec)   p_kst 3.606061e-04   p_cons 2.045087e-01   p_joint 7.597403e-04

Joint ci ratio: 9.337732e-02	ci left: 7.236014e-04	ci right 7.948957e-04	k: 1760	n:2320000
Cons ci ratio: 5.075760e-03	ci left: 2.039915e-01	ci right 2.050299e-01	k: 474464	n:2320000
KS ci ratio: 1.356328e-01	ci left: 3.355001e-04	ci right 3.847266e-04	k: 834	n:2320000
C2orf44   2320000 perm   2298 sec   (1010 perm/sec)   p_kst 3.594828e-04   p_cons 2.045103e-01   p_joint 7.586207e-04

Joint ci ratio: 9.319230e-02	ci left: 7.234300e-04	ci right 7.945585e-04	k: 1767	n:2330000
Cons ci ratio: 5.064790e-03	ci left: 2.039968e-01	ci right 2.050331e-01	k: 476519	n:2330000
KS ci ratio: 1.353090e-01	ci left: 3.357188e-04	ci right 3.848503e-04	k: 838	n:2330000
C2orf44   2330000 perm   2316 sec   (1006 perm/sec)   p_kst 3.596567e-04   p_cons 2.045146e-01   p_joint 7.583691e-04

Joint ci ratio: 9.298216e-02	ci left: 7.236776e-04	ci right 7.946613e-04	k: 1775	n:2340000
Cons ci ratio: 5.053665e-03	ci left: 2.040167e-01	ci right 2.050507e-01	k: 478608	n:2340000
KS ci ratio: 1.349876e-01	ci left: 3.359357e-04	ci right 3.849728e-04	k: 842	n:2340000
C2orf44   2340000 perm   2334 sec   (1003 perm/sec)   p_kst 3.598291e-04   p_cons 2.045333e-01   p_joint 7.585470e-04

Joint ci ratio: 9.282552e-02	ci left: 7.230920e-04	ci right 7.938923e-04	k: 1781	n:2350000
Cons ci ratio: 5.043563e-03	ci left: 2.039751e-01	ci right 2.050069e-01	k: 480553	n:2350000
KS ci ratio: 1.345890e-01	ci left: 3.365621e-04	ci right 3.855340e-04	k: 847	n:2350000
C2orf44   2350000 perm   2352 sec   (999 perm/sec)   p_kst 3.604255e-04   p_cons 2.044906e-01   p_joint 7.578723e-04

Joint ci ratio: 9.396716e-02	ci left: 7.022329e-04	ci right 7.718830e-04	k: 1738	n:2360000
Cons ci ratio: 5.032440e-03	ci left: 2.040038e-01	ci right 2.050334e-01	k: 482663	n:2360000
KS ci ratio: 1.343516e-01	ci left: 3.363644e-04	ci right 3.852143e-04	k: 850	n:2360000
C2orf44   2360000 perm   2371 sec   (996 perm/sec)   p_kst 3.601695e-04   p_cons 2.045182e-01   p_joint 7.364407e-04

Joint ci ratio: 9.445779e-02	ci left: 6.918537e-04	ci right 7.608524e-04	k: 1720	n:2370000
Cons ci ratio: 5.021207e-03	ci left: 2.040440e-01	ci right 2.050715e-01	k: 484801	n:2370000
KS ci ratio: 1.341154e-01	ci left: 3.361684e-04	ci right 3.848972e-04	k: 853	n:2370000
C2orf44   2370000 perm   2389 sec   (992 perm/sec)   p_kst 3.599156e-04   p_cons 2.045574e-01   p_joint 7.257384e-04

Joint ci ratio: 9.470608e-02	ci left: 6.852546e-04	ci right 7.537848e-04	k: 1711	n:2380000
Cons ci ratio: 5.011110e-03	ci left: 2.040150e-01	ci right 2.050403e-01	k: 486775	n:2380000
KS ci ratio: 1.338024e-01	ci left: 3.363803e-04	ci right 3.850169e-04	k: 857	n:2380000
C2orf44   2380000 perm   2407 sec   (989 perm/sec)   p_kst 3.600840e-04   p_cons 2.045273e-01   p_joint 7.189076e-04

Joint ci ratio: 9.445808e-02	ci left: 6.860641e-04	ci right 7.544856e-04	k: 1720	n:2390000
Cons ci ratio: 5.000605e-03	ci left: 2.040168e-01	ci right 2.050400e-01	k: 488822	n:2390000
KS ci ratio: 1.333370e-01	ci left: 3.373995e-04	ci right 3.860003e-04	k: 863	n:2390000
C2orf44   2390000 perm   2426 sec   (985 perm/sec)   p_kst 3.610879e-04   p_cons 2.045280e-01   p_joint 7.196653e-04

Joint ci ratio: 9.410322e-02	ci left: 6.884945e-04	ci right 7.568862e-04	k: 1733	n:2400000
Cons ci ratio: 4.989980e-03	ci left: 2.040307e-01	ci right 2.050517e-01	k: 490898	n:2400000
KS ci ratio: 1.327238e-01	ci left: 3.392161e-04	ci right 3.878361e-04	k: 871	n:2400000
C2orf44   2400000 perm   2444 sec   (982 perm/sec)   p_kst 3.629167e-04   p_cons 2.045408e-01   p_joint 7.220833e-04

Joint ci ratio: 9.385992e-02	ci left: 6.892843e-04	ci right 7.575678e-04	k: 1742	n:2410000
Cons ci ratio: 4.979651e-03	ci left: 2.040295e-01	ci right 2.050484e-01	k: 492938	n:2410000
KS ci ratio: 1.324204e-01	ci left: 3.394132e-04	ci right 3.879416e-04	k: 875	n:2410000
C2orf44   2410000 perm   2463 sec   (979 perm/sec)   p_kst 3.630705e-04   p_cons 2.045386e-01   p_joint 7.228216e-04

Joint ci ratio: 9.367202e-02	ci left: 6.892608e-04	ci right 7.573977e-04	k: 1749	n:2420000
Cons ci ratio: 4.969120e-03	ci left: 2.040456e-01	ci right 2.050625e-01	k: 495020	n:2420000
KS ci ratio: 1.320441e-01	ci left: 3.400085e-04	ci right 3.884730e-04	k: 880	n:2420000
C2orf44   2420000 perm   2482 sec   (975 perm/sec)   p_kst 3.636364e-04   p_cons 2.045537e-01   p_joint 7.227273e-04

Joint ci ratio: 9.353853e-02	ci left: 6.884337e-04	ci right 7.563866e-04	k: 1754	n:2430000
Cons ci ratio: 4.958519e-03	ci left: 2.040707e-01	ci right 2.050855e-01	k: 497124	n:2430000
KS ci ratio: 1.317453e-01	ci left: 3.402010e-04	ci right 3.885747e-04	k: 884	n:2430000
C2orf44   2430000 perm   2500 sec   (972 perm/sec)   p_kst 3.637860e-04   p_cons 2.045778e-01   p_joint 7.218107e-04

Joint ci ratio: 9.322028e-02	ci left: 6.904155e-04	ci right 7.583195e-04	k: 1766	n:2440000
Cons ci ratio: 4.947985e-03	ci left: 2.040956e-01	ci right 2.051084e-01	k: 499228	n:2440000
KS ci ratio: 1.310804e-01	ci left: 3.423741e-04	ci right 3.907918e-04	k: 893	n:2440000
C2orf44   2440000 perm   2519 sec   (969 perm/sec)   p_kst 3.659836e-04   p_cons 2.046016e-01   p_joint 7.237705e-04

Joint ci ratio: 9.353880e-02	ci left: 6.828138e-04	ci right 7.502121e-04	k: 1754	n:2450000
Cons ci ratio: 4.937976e-03	ci left: 2.040901e-01	ci right 2.051008e-01	k: 501258	n:2450000
KS ci ratio: 1.308610e-01	ci left: 3.421610e-04	ci right 3.904614e-04	k: 896	n:2450000
C2orf44   2450000 perm   2538 sec   (965 perm/sec)   p_kst 3.657143e-04   p_cons 2.045951e-01   p_joint 7.159184e-04

Joint ci ratio: 9.337934e-02	ci left: 6.824201e-04	ci right 7.496585e-04	k: 1760	n:2460000
Cons ci ratio: 4.927972e-03	ci left: 2.040883e-01	ci right 2.050969e-01	k: 503297	n:2460000
KS ci ratio: 1.305702e-01	ci left: 3.423429e-04	ci right 3.905533e-04	k: 900	n:2460000
C2orf44   2460000 perm   2557 sec   (962 perm/sec)   p_kst 3.658537e-04   p_cons 2.045923e-01   p_joint 7.154472e-04

Joint ci ratio: 9.319430e-02	ci left: 6.824252e-04	ci right 7.495236e-04	k: 1767	n:2470000
Cons ci ratio: 4.918334e-03	ci left: 2.040663e-01	ci right 2.050728e-01	k: 505286	n:2470000
KS ci ratio: 1.302094e-01	ci left: 3.429152e-04	ci right 3.910624e-04	k: 905	n:2470000
C2orf44   2470000 perm   2576 sec   (959 perm/sec)   p_kst 3.663968e-04   p_cons 2.045692e-01   p_joint 7.153846e-04

Joint ci ratio: 9.306284e-02	ci left: 6.816426e-04	ci right 7.485644e-04	k: 1772	n:2480000
Cons ci ratio: 4.908413e-03	ci left: 2.040670e-01	ci right 2.050715e-01	k: 507331	n:2480000
KS ci ratio: 1.299943e-01	ci left: 3.427028e-04	ci right 3.907345e-04	k: 908	n:2480000
C2orf44   2480000 perm   2595 sec   (956 perm/sec)   p_kst 3.661290e-04   p_cons 2.045690e-01   p_joint 7.145161e-04

Joint ci ratio: 9.285358e-02	ci left: 6.820433e-04	ci right 7.488456e-04	k: 1780	n:2490000
Cons ci ratio: 4.898986e-03	ci left: 2.040389e-01	ci right 2.050413e-01	k: 509304	n:2490000
KS ci ratio: 1.295674e-01	ci left: 3.436579e-04	ci right 3.916531e-04	k: 914	n:2490000
C2orf44   2490000 perm   2614 sec   (953 perm/sec)   p_kst 3.670683e-04   p_cons 2.045398e-01   p_joint 7.148594e-04

Joint ci ratio: 9.269759e-02	ci left: 6.816594e-04	ci right 7.483059e-04	k: 1786	n:2500000
Cons ci ratio: 4.889192e-03	ci left: 2.040389e-01	ci right 2.050393e-01	k: 511347	n:2500000
KS ci ratio: 1.292851e-01	ci left: 3.438315e-04	ci right 3.917383e-04	k: 918	n:2500000
C2orf44   2500000 perm   2633 sec   (950 perm/sec)   p_kst 3.672000e-04   p_cons 2.045388e-01   p_joint 7.144000e-04

Joint ci ratio: 9.243925e-02	ci left: 6.828355e-04	ci right 7.494008e-04	k: 1796	n:2510000
Cons ci ratio: 4.879559e-03	ci left: 2.040322e-01	ci right 2.050306e-01	k: 513373	n:2510000
KS ci ratio: 1.289348e-01	ci left: 3.443893e-04	ci right 3.922339e-04	k: 923	n:2510000
C2orf44   2510000 perm   2652 sec   (947 perm/sec)   p_kst 3.677291e-04   p_cons 2.045311e-01   p_joint 7.155378e-04

Joint ci ratio: 9.215755e-02	ci left: 6.843902e-04	ci right 7.508928e-04	k: 1807	n:2520000
Cons ci ratio: 4.869793e-03	ci left: 2.040382e-01	ci right 2.050347e-01	k: 515431	n:2520000
KS ci ratio: 1.285873e-01	ci left: 3.449429e-04	ci right 3.927254e-04	k: 928	n:2520000
C2orf44   2520000 perm   2671 sec   (943 perm/sec)   p_kst 3.682540e-04   p_cons 2.045361e-01   p_joint 7.170635e-04

Joint ci ratio: 9.195432e-02	ci left: 6.847743e-04	ci right 7.511597e-04	k: 1815	n:2530000
Cons ci ratio: 4.860173e-03	ci left: 2.040383e-01	ci right 2.050327e-01	k: 517474	n:2530000
KS ci ratio: 1.283802e-01	ci left: 3.447272e-04	ci right 3.923970e-04	k: 931	n:2530000
C2orf44   2530000 perm   2691 sec   (940 perm/sec)   p_kst 3.679842e-04   p_cons 2.045352e-01   p_joint 7.173913e-04

Joint ci ratio: 8.714099e-02	ci left: 7.613671e-04	ci right 8.311177e-04	k: 2021	n:2540000
Cons ci ratio: 4.850475e-03	ci left: 2.040474e-01	ci right 2.050399e-01	k: 519540	n:2540000
KS ci ratio: 1.282427e-01	ci left: 3.441321e-04	ci right 3.916648e-04	k: 933	n:2540000
C2orf44   2540000 perm   2710 sec   (937 perm/sec)   p_kst 3.673228e-04   p_cons 2.045433e-01   p_joint 7.956693e-04

Joint ci ratio: 8.684077e-02	ci left: 7.637522e-04	ci right 8.334679e-04	k: 2035	n:2550000
Cons ci ratio: 4.840893e-03	ci left: 2.040525e-01	ci right 2.050431e-01	k: 521596	n:2550000
KS ci ratio: 1.277647e-01	ci left: 3.454398e-04	ci right 3.929618e-04	k: 940	n:2550000
C2orf44   2550000 perm   2730 sec   (934 perm/sec)   p_kst 3.686275e-04   p_cons 2.045475e-01   p_joint 7.980392e-04

Joint ci ratio: 8.654363e-02	ci left: 7.661190e-04	ci right 8.357994e-04	k: 2049	n:2560000
Cons ci ratio: 4.831403e-03	ci left: 2.040552e-01	ci right 2.050439e-01	k: 523646	n:2560000
KS ci ratio: 1.274940e-01	ci left: 3.456030e-04	ci right 3.930392e-04	k: 944	n:2560000
C2orf44   2560000 perm   2750 sec   (931 perm/sec)   p_kst 3.687500e-04   p_cons 2.045492e-01   p_joint 8.003906e-04

Joint ci ratio: 8.645939e-02	ci left: 7.646607e-04	ci right 8.341374e-04	k: 2053	n:2570000
Cons ci ratio: 4.821957e-03	ci left: 2.040587e-01	ci right 2.050454e-01	k: 525698	n:2570000
KS ci ratio: 1.272922e-01	ci left: 3.453884e-04	ci right 3.927143e-04	k: 947	n:2570000
C2orf44   2570000 perm   2770 sec   (928 perm/sec)   p_kst 3.684825e-04   p_cons 2.045518e-01   p_joint 7.988327e-04

Joint ci ratio: 8.643846e-02	ci left: 7.620761e-04	ci right 8.313003e-04	k: 2054	n:2580000
Cons ci ratio: 4.812554e-03	ci left: 2.040630e-01	ci right 2.050478e-01	k: 527752	n:2580000
KS ci ratio: 1.269578e-01	ci left: 3.459260e-04	ci right 3.931917e-04	k: 952	n:2580000
C2orf44   2580000 perm   2789 sec   (925 perm/sec)   p_kst 3.689922e-04   p_cons 2.045550e-01   p_joint 7.961240e-04

Joint ci ratio: 8.627070e-02	ci left: 7.621558e-04	ci right 8.312462e-04	k: 2062	n:2590000
Cons ci ratio: 4.803189e-03	ci left: 2.040683e-01	ci right 2.050512e-01	k: 529809	n:2590000
KS ci ratio: 1.266922e-01	ci left: 3.460858e-04	ci right 3.932670e-04	k: 956	n:2590000
C2orf44   2590000 perm   2809 sec   (922 perm/sec)   p_kst 3.691120e-04   p_cons 2.045595e-01   p_joint 7.961390e-04

Joint ci ratio: 8.705566e-02	ci left: 7.453018e-04	ci right 8.135103e-04	k: 2025	n:2600000
Cons ci ratio: 4.794225e-03	ci left: 2.040502e-01	ci right 2.050312e-01	k: 531805	n:2600000
KS ci ratio: 1.263625e-01	ci left: 3.466169e-04	ci right 3.937383e-04	k: 961	n:2600000
C2orf44   2600000 perm   2829 sec   (919 perm/sec)   p_kst 3.696154e-04   p_cons 2.045404e-01   p_joint 7.788462e-04

Joint ci ratio: 8.688428e-02	ci left: 7.454447e-04	ci right 8.135252e-04	k: 2033	n:2610000
Cons ci ratio: 4.784921e-03	ci left: 2.040587e-01	ci right 2.050378e-01	k: 533870	n:2610000
KS ci ratio: 1.260353e-01	ci left: 3.471441e-04	ci right 3.942059e-04	k: 966	n:2610000
C2orf44   2610000 perm   2849 sec   (916 perm/sec)   p_kst 3.701149e-04   p_cons 2.045479e-01   p_joint 7.789272e-04

Joint ci ratio: 8.110395e-02	ci left: 8.547030e-04	ci right 9.273235e-04	k: 2333	n:2620000
Cons ci ratio: 4.775475e-03	ci left: 2.040804e-01	ci right 2.050577e-01	k: 535970	n:2620000
KS ci ratio: 1.256461e-01	ci left: 3.480371e-04	ci right 3.950634e-04	k: 972	n:2620000
C2orf44   2620000 perm   2869 sec   (913 perm/sec)   p_kst 3.709924e-04   p_cons 2.045687e-01   p_joint 8.904580e-04

Joint ci ratio: 8.099995e-02	ci left: 8.536883e-04	ci right 9.261252e-04	k: 2339	n:2630000
Cons ci ratio: 4.766214e-03	ci left: 2.040932e-01	ci right 2.050687e-01	k: 538047	n:2630000
KS ci ratio: 1.255172e-01	ci left: 3.474503e-04	ci right 3.943456e-04	k: 974	n:2630000
C2orf44   2630000 perm   2889 sec   (910 perm/sec)   p_kst 3.703422e-04   p_cons 2.045806e-01   p_joint 8.893536e-04

Joint ci ratio: 8.081020e-02	ci left: 8.545370e-04	ci right 9.268680e-04	k: 2350	n:2640000
Cons ci ratio: 4.756817e-03	ci left: 2.041188e-01	ci right 2.050924e-01	k: 540158	n:2640000
KS ci ratio: 1.253245e-01	ci left: 3.472350e-04	ci right 3.940239e-04	k: 977	n:2640000
C2orf44   2640000 perm   2910 sec   (907 perm/sec)   p_kst 3.700758e-04   p_cons 2.046053e-01   p_joint 8.901515e-04

Joint ci ratio: 8.067308e-02	ci left: 8.542702e-04	ci right 9.264502e-04	k: 2358	n:2650000
Cons ci ratio: 4.748038e-03	ci left: 2.041058e-01	ci right 2.050775e-01	k: 542167	n:2650000
KS ci ratio: 1.250054e-01	ci left: 3.477524e-04	ci right 3.944828e-04	k: 982	n:2650000
C2orf44   2650000 perm   2930 sec   (904 perm/sec)   p_kst 3.705660e-04   p_cons 2.045913e-01   p_joint 8.898113e-04

Joint ci ratio: 8.051962e-02	ci left: 8.543740e-04	ci right 9.264190e-04	k: 2367	n:2660000
Cons ci ratio: 4.739334e-03	ci left: 2.040909e-01	ci right 2.050608e-01	k: 544171	n:2660000
KS ci ratio: 1.247518e-01	ci left: 3.479018e-04	ci right 3.945505e-04	k: 986	n:2660000
C2orf44   2660000 perm   2950 sec   (902 perm/sec)   p_kst 3.706767e-04   p_cons 2.045756e-01   p_joint 8.898496e-04

Joint ci ratio: 8.028258e-02	ci left: 8.563121e-04	ci right 9.282980e-04	k: 2381	n:2670000
Cons ci ratio: 4.730062e-03	ci left: 2.041185e-01	ci right 2.050866e-01	k: 546288	n:2670000
KS ci ratio: 1.244370e-01	ci left: 3.484131e-04	ci right 3.950038e-04	k: 991	n:2670000
C2orf44   2670000 perm   2971 sec   (899 perm/sec)   p_kst 3.711610e-04   p_cons 2.046022e-01   p_joint 8.917603e-04

Joint ci ratio: 8.040104e-02	ci left: 8.505574e-04	ci right 9.221700e-04	k: 2374	n:2680000
Cons ci ratio: 4.721381e-03	ci left: 2.041090e-01	ci right 2.050753e-01	k: 548306	n:2680000
KS ci ratio: 1.241245e-01	ci left: 3.489207e-04	ci right 3.954535e-04	k: 996	n:2680000
C2orf44   2680000 perm   2992 sec   (896 perm/sec)   p_kst 3.716418e-04   p_cons 2.045918e-01   p_joint 8.858209e-04

Joint ci ratio: 8.023229e-02	ci left: 8.510383e-04	ci right 9.225339e-04	k: 2384	n:2690000
Cons ci ratio: 4.712893e-03	ci left: 2.040895e-01	ci right 2.050539e-01	k: 550297	n:2690000
KS ci ratio: 1.240003e-01	ci left: 3.483440e-04	ci right 3.947500e-04	k: 998	n:2690000
C2orf44   2690000 perm   3013 sec   (893 perm/sec)   p_kst 3.710037e-04   p_cons 2.045714e-01   p_joint 8.862454e-04

Joint ci ratio: 8.173839e-02	ci left: 8.163159e-04	ci right 8.862432e-04	k: 2297	n:2700000
Cons ci ratio: 4.703909e-03	ci left: 2.041075e-01	ci right 2.050702e-01	k: 552389	n:2700000
KS ci ratio: 1.238145e-01	ci left: 3.481306e-04	ci right 3.944335e-04	k: 1001	n:2700000
C2orf44   2700000 perm   3033 sec   (890 perm/sec)   p_kst 3.707407e-04   p_cons 2.045885e-01   p_joint 8.507407e-04

Joint ci ratio: 8.157879e-02	ci left: 8.165569e-04	ci right 8.863618e-04	k: 2306	n:2710000
Cons ci ratio: 4.695328e-03	ci left: 2.041010e-01	ci right 2.050620e-01	k: 554415	n:2710000
KS ci ratio: 1.235681e-01	ci left: 3.482763e-04	ci right 3.944997e-04	k: 1005	n:2710000
C2orf44   2710000 perm   3055 sec   (887 perm/sec)   p_kst 3.708487e-04   p_cons 2.045812e-01   p_joint 8.509225e-04

Joint ci ratio: 8.142012e-02	ci left: 8.167963e-04	ci right 8.864793e-04	k: 2315	n:2720000
Cons ci ratio: 4.686498e-03	ci left: 2.041152e-01	ci right 2.050744e-01	k: 556497	n:2720000
KS ci ratio: 1.233843e-01	ci left: 3.480647e-04	ci right 3.941863e-04	k: 1008	n:2720000
C2orf44   2720000 perm   3076 sec   (884 perm/sec)   p_kst 3.705882e-04   p_cons 2.045945e-01   p_joint 8.511029e-04

Joint ci ratio: 8.122741e-02	ci left: 8.177517e-04	ci right 8.873434e-04	k: 2326	n:2730000
Cons ci ratio: 4.677901e-03	ci left: 2.041165e-01	ci right 2.050739e-01	k: 558544	n:2730000
KS ci ratio: 1.232622e-01	ci left: 3.474998e-04	ci right 3.934976e-04	k: 1010	n:2730000
C2orf44   2730000 perm   3096 sec   (882 perm/sec)   p_kst 3.699634e-04   p_cons 2.045949e-01   p_joint 8.520147e-04

Joint ci ratio: 8.110554e-02	ci left: 8.172701e-04	ci right 8.867115e-04	k: 2333	n:2740000
Cons ci ratio: 4.669027e-03	ci left: 2.041403e-01	ci right 2.050961e-01	k: 560653	n:2740000
KS ci ratio: 1.230798e-01	ci left: 3.472927e-04	ci right 3.931901e-04	k: 1013	n:2740000
C2orf44   2740000 perm   3117 sec   (879 perm/sec)   p_kst 3.697080e-04   p_cons 2.046179e-01   p_joint 8.514599e-04

Joint ci ratio: 8.096690e-02	ci left: 8.171484e-04	ci right 8.864551e-04	k: 2341	n:2750000
Cons ci ratio: 4.660281e-03	ci left: 2.041586e-01	ci right 2.051126e-01	k: 562747	n:2750000
KS ci ratio: 1.225970e-01	ci left: 3.488495e-04	ci right 3.947587e-04	k: 1021	n:2750000
C2orf44   2750000 perm   3138 sec   (876 perm/sec)   p_kst 3.712727e-04   p_cons 2.046353e-01   p_joint 8.512727e-04

Joint ci ratio: 7.444372e-02	ci left: 9.662549e-04	ci right 1.041320e-03	k: 2769	n:2760000
Cons ci ratio: 4.651905e-03	ci left: 2.041542e-01	ci right 2.051065e-01	k: 564779	n:2760000
KS ci ratio: 1.224175e-01	ci left: 3.486392e-04	ci right 3.944487e-04	k: 1024	n:2760000
C2orf44   2760000 perm   3158 sec   (874 perm/sec)   p_kst 3.710145e-04   p_cons 2.046301e-01   p_joint 1.003261e-03

Joint ci ratio: 6.851026e-02	ci left: 1.140055e-03	ci right 1.221283e-03	k: 3269	n:2770000
Cons ci ratio: 4.643780e-03	ci left: 2.041355e-01	ci right 2.050860e-01	k: 566771	n:2770000
KS ci ratio: 1.220015e-01	ci left: 3.498304e-04	ci right 3.956290e-04	k: 1031	n:2770000
C2orf44   2770000 perm   3180 sec   (871 perm/sec)   p_kst 3.722022e-04   p_cons 2.046105e-01   p_joint 1.180144e-03

Joint ci ratio: 6.841621e-02	ci left: 1.139136e-03	ci right 1.220182e-03	k: 3278	n:2780000
Cons ci ratio: 4.635355e-03	ci left: 2.041410e-01	ci right 2.050898e-01	k: 568830	n:2780000
KS ci ratio: 1.218246e-01	ci left: 3.496183e-04	ci right 3.953179e-04	k: 1034	n:2780000
C2orf44   2780000 perm   3201 sec   (869 perm/sec)   p_kst 3.719424e-04   p_cons 2.046151e-01   p_joint 1.179137e-03

Joint ci ratio: 7.013999e-02	ci left: 1.079050e-03	ci right 1.157834e-03	k: 3119	n:2790000
Cons ci ratio: 4.627158e-03	ci left: 2.041336e-01	ci right 2.050807e-01	k: 570853	n:2790000
KS ci ratio: 1.214146e-01	ci left: 3.507978e-04	ci right 3.964862e-04	k: 1041	n:2790000
C2orf44   2790000 perm   3222 sec   (866 perm/sec)   p_kst 3.731183e-04   p_cons 2.046068e-01   p_joint 1.117921e-03

Joint ci ratio: 7.005028e-02	ci left: 1.078003e-03	ci right 1.156606e-03	k: 3127	n:2800000
Cons ci ratio: 4.618726e-03	ci left: 2.041458e-01	ci right 2.050912e-01	k: 572931	n:2800000
KS ci ratio: 1.212402e-01	ci left: 3.505839e-04	ci right 3.961741e-04	k: 1044	n:2800000
C2orf44   2800000 perm   3244 sec   (863 perm/sec)   p_kst 3.728571e-04   p_cons 2.046182e-01   p_joint 1.116786e-03

Joint ci ratio: 6.994975e-02	ci left: 1.077313e-03	ci right 1.155749e-03	k: 3136	n:2810000
Cons ci ratio: 4.609982e-03	ci left: 2.041832e-01	ci right 2.051270e-01	k: 575080	n:2810000
KS ci ratio: 1.210089e-01	ci left: 3.507166e-04	ci right 3.962308e-04	k: 1048	n:2810000
C2orf44   2810000 perm   3265 sec   (861 perm/sec)   p_kst 3.729537e-04   p_cons 2.046548e-01   p_joint 1.116014e-03

Joint ci ratio: 6.996105e-02	ci left: 1.073145e-03	ci right 1.151290e-03	k: 3135	n:2820000
Cons ci ratio: 4.601609e-03	ci left: 2.041977e-01	ci right 2.051398e-01	k: 577165	n:2820000
KS ci ratio: 1.205500e-01	ci left: 3.522241e-04	ci right 3.977483e-04	k: 1056	n:2820000
C2orf44   2820000 perm   3286 sec   (858 perm/sec)   p_kst 3.744681e-04   p_cons 2.046684e-01   p_joint 1.111702e-03

Joint ci ratio: 6.990542e-02	ci left: 1.071088e-03	ci right 1.149020e-03	k: 3140	n:2830000
Cons ci ratio: 4.593335e-03	ci left: 2.042081e-01	ci right 2.051486e-01	k: 579239	n:2830000
KS ci ratio: 1.203225e-01	ci left: 3.523503e-04	ci right 3.977988e-04	k: 1060	n:2830000
C2orf44   2830000 perm   3307 sec   (856 perm/sec)   p_kst 3.745583e-04   p_cons 2.046781e-01   p_joint 1.109541e-03

Joint ci ratio: 6.981661e-02	ci left: 1.070085e-03	ci right 1.147840e-03	k: 3148	n:2840000
Cons ci ratio: 4.584997e-03	ci left: 2.042263e-01	ci right 2.051652e-01	k: 581335	n:2840000
KS ci ratio: 1.201528e-01	ci left: 3.521342e-04	ci right 3.974862e-04	k: 1063	n:2840000
C2orf44   2840000 perm   3328 sec   (853 perm/sec)   p_kst 3.742958e-04   p_cons 2.046954e-01   p_joint 1.108451e-03

Joint ci ratio: 7.188002e-02	ci left: 1.004979e-03	ci right 1.080251e-03	k: 2970	n:2850000
Cons ci ratio: 4.576985e-03	ci left: 2.042243e-01	ci right 2.051615e-01	k: 583374	n:2850000
KS ci ratio: 1.199276e-01	ci left: 3.522600e-04	ci right 3.975371e-04	k: 1067	n:2850000
C2orf44   2850000 perm   3351 sec   (851 perm/sec)   p_kst 3.743860e-04   p_cons 2.046926e-01   p_joint 1.042105e-03

Joint ci ratio: 7.172324e-02	ci left: 1.005929e-03	ci right 1.081101e-03	k: 2983	n:2860000
Cons ci ratio: 4.568932e-03	ci left: 2.042283e-01	ci right 2.051639e-01	k: 585430	n:2860000
KS ci ratio: 1.195920e-01	ci left: 3.530634e-04	ci right 3.983079e-04	k: 1073	n:2860000
C2orf44   2860000 perm   3373 sec   (848 perm/sec)   p_kst 3.751748e-04   p_cons 2.046958e-01   p_joint 1.043007e-03

Joint ci ratio: 7.160337e-02	ci left: 1.005846e-03	ci right 1.080881e-03	k: 2993	n:2870000
Cons ci ratio: 4.561029e-03	ci left: 2.042246e-01	ci right 2.051586e-01	k: 587464	n:2870000
KS ci ratio: 1.192593e-01	ci left: 3.538614e-04	ci right 3.990730e-04	k: 1079	n:2870000
C2orf44   2870000 perm   3395 sec   (845 perm/sec)   p_kst 3.759582e-04   p_cons 2.046913e-01   p_joint 1.042857e-03

Joint ci ratio: 7.148409e-02	ci left: 1.005763e-03	ci right 1.080663e-03	k: 3003	n:2880000
Cons ci ratio: 4.553127e-03	ci left: 2.042237e-01	ci right 2.051560e-01	k: 589506	n:2880000
KS ci ratio: 1.189842e-01	ci left: 3.543171e-04	ci right 3.994752e-04	k: 1084	n:2880000
C2orf44   2880000 perm   3417 sec   (843 perm/sec)   p_kst 3.763889e-04   p_cons 2.046896e-01   p_joint 1.042708e-03

Joint ci ratio: 7.135356e-02	ci left: 1.006021e-03	ci right 1.080797e-03	k: 3014	n:2890000
Cons ci ratio: 4.545334e-03	ci left: 2.042180e-01	ci right 2.051487e-01	k: 591534	n:2890000
KS ci ratio: 1.187655e-01	ci left: 3.544340e-04	ci right 3.995181e-04	k: 1088	n:2890000
C2orf44   2890000 perm   3439 sec   (840 perm/sec)   p_kst 3.764706e-04   p_cons 2.046830e-01   p_joint 1.042907e-03

Joint ci ratio: 7.127092e-02	ci left: 1.004923e-03	ci right 1.079527e-03	k: 3021	n:2900000
Cons ci ratio: 4.537389e-03	ci left: 2.042261e-01	ci right 2.051552e-01	k: 593602	n:2900000
KS ci ratio: 1.186566e-01	ci left: 3.538810e-04	ci right 3.988506e-04	k: 1090	n:2900000
C2orf44   2900000 perm   3461 sec   (838 perm/sec)   p_kst 3.758621e-04   p_cons 2.046903e-01   p_joint 1.041724e-03

Joint ci ratio: 7.120033e-02	ci left: 1.003495e-03	ci right 1.077916e-03	k: 3027	n:2910000
Cons ci ratio: 4.529653e-03	ci left: 2.042221e-01	ci right 2.051496e-01	k: 595635	n:2910000
KS ci ratio: 1.185480e-01	ci left: 3.533318e-04	ci right 3.981877e-04	k: 1092	n:2910000
C2orf44   2910000 perm   3483 sec   (836 perm/sec)   p_kst 3.752577e-04   p_cons 2.046856e-01   p_joint 1.040206e-03

Joint ci ratio: 7.105964e-02	ci left: 1.004095e-03	ci right 1.078407e-03	k: 3039	n:2920000
Cons ci ratio: 4.521956e-03	ci left: 2.042182e-01	ci right 2.051441e-01	k: 597668	n:2920000
KS ci ratio: 1.183857e-01	ci left: 3.531187e-04	ci right 3.978818e-04	k: 1095	n:2920000
C2orf44   2920000 perm   3505 sec   (833 perm/sec)   p_kst 3.750000e-04   p_cons 2.046808e-01   p_joint 1.040753e-03

Joint ci ratio: 7.091979e-02	ci left: 1.004691e-03	ci right 1.078895e-03	k: 3051	n:2930000
Cons ci ratio: 4.514198e-03	ci left: 2.042214e-01	ci right 2.051457e-01	k: 599722	n:2930000
KS ci ratio: 1.181165e-01	ci left: 3.535695e-04	ci right 3.982808e-04	k: 1100	n:2930000
C2orf44   2930000 perm   3527 sec   (831 perm/sec)   p_kst 3.754266e-04   p_cons 2.046833e-01   p_joint 1.041297e-03

Joint ci ratio: 7.078075e-02	ci left: 1.005283e-03	ci right 1.079379e-03	k: 3063	n:2940000
Cons ci ratio: 4.506020e-03	ci left: 2.042579e-01	ci right 2.051807e-01	k: 601874	n:2940000
KS ci ratio: 1.179026e-01	ci left: 3.536873e-04	ci right 3.983268e-04	k: 1104	n:2940000
C2orf44   2940000 perm   3549 sec   (828 perm/sec)   p_kst 3.755102e-04   p_cons 2.047190e-01   p_joint 1.041837e-03

Joint ci ratio: 7.064254e-02	ci left: 1.005871e-03	ci right 1.079860e-03	k: 3075	n:2950000
Cons ci ratio: 4.498157e-03	ci left: 2.042746e-01	ci right 2.051958e-01	k: 603968	n:2950000
KS ci ratio: 1.178493e-01	ci left: 3.528174e-04	ci right 3.973255e-04	k: 1105	n:2950000
C2orf44   2950000 perm   3571 sec   (826 perm/sec)   p_kst 3.745763e-04   p_cons 2.047349e-01   p_joint 1.042373e-03

Joint ci ratio: 7.052799e-02	ci left: 1.005791e-03	ci right 1.079650e-03	k: 3085	n:2960000
Cons ci ratio: 4.490796e-03	ci left: 2.042577e-01	ci right 2.051774e-01	k: 605963	n:2960000
KS ci ratio: 1.177961e-01	ci left: 3.519533e-04	ci right 3.963310e-04	k: 1106	n:2960000
C2orf44   2960000 perm   3594 sec   (824 perm/sec)   p_kst 3.736486e-04   p_cons 2.047172e-01   p_joint 1.042230e-03

Joint ci ratio: 7.131906e-02	ci left: 9.799147e-04	ci right 1.052714e-03	k: 3017	n:2970000
Cons ci ratio: 4.483133e-03	ci left: 2.042655e-01	ci right 2.051836e-01	k: 608031	n:2970000
KS ci ratio: 1.175839e-01	ci left: 3.520754e-04	ci right 3.963830e-04	k: 1110	n:2970000
C2orf44   2970000 perm   3616 sec   (821 perm/sec)   p_kst 3.737374e-04   p_cons 2.047242e-01   p_joint 1.015825e-03

Joint ci ratio: 7.117767e-02	ci left: 9.805815e-04	ci right 1.053280e-03	k: 3029	n:2980000
Cons ci ratio: 4.475619e-03	ci left: 2.042652e-01	ci right 2.051817e-01	k: 610075	n:2980000
KS ci ratio: 1.171104e-01	ci left: 3.538254e-04	ci right 3.981616e-04	k: 1119	n:2980000
C2orf44   2980000 perm   3639 sec   (819 perm/sec)   p_kst 3.755034e-04   p_cons 2.047232e-01   p_joint 1.016443e-03

Joint ci ratio: 7.111908e-02	ci left: 9.789444e-04	ci right 1.051459e-03	k: 3034	n:2990000
Cons ci ratio: 4.467969e-03	ci left: 2.042775e-01	ci right 2.051926e-01	k: 612157	n:2990000
KS ci ratio: 1.170060e-01	ci left: 3.532914e-04	ci right 3.975184e-04	k: 1121	n:2990000
C2orf44   2990000 perm   3662 sec   (817 perm/sec)   p_kst 3.749164e-04   p_cons 2.047348e-01   p_joint 1.014716e-03

Joint ci ratio: 7.097887e-02	ci left: 9.796102e-04	ci right 1.052025e-03	k: 3046	n:3000000
Cons ci ratio: 4.460568e-03	ci left: 2.042745e-01	ci right 2.051881e-01	k: 614193	n:3000000
KS ci ratio: 1.167461e-01	ci left: 3.537317e-04	ci right 3.979087e-04	k: 1126	n:3000000
C2orf44   3000000 perm   3685 sec   (814 perm/sec)   p_kst 3.753333e-04   p_cons 2.047310e-01   p_joint 1.015333e-03

Joint ci ratio: 6.553159e-02	ci left: 1.148459e-03	ci right 1.226593e-03	k: 3573	n:3010000
Cons ci ratio: 4.453422e-03	ci left: 2.042556e-01	ci right 2.051676e-01	k: 616181	n:3010000
KS ci ratio: 1.165395e-01	ci left: 3.538466e-04	ci right 3.979544e-04	k: 1130	n:3010000
C2orf44   3010000 perm   3708 sec   (812 perm/sec)   p_kst 3.754153e-04   p_cons 2.047113e-01   p_joint 1.187043e-03

Joint ci ratio: 6.544927e-02	ci left: 1.147587e-03	ci right 1.225560e-03	k: 3582	n:3020000
Cons ci ratio: 4.445935e-03	ci left: 2.042642e-01	ci right 2.051747e-01	k: 618252	n:3020000
KS ci ratio: 1.163852e-01	ci left: 3.536394e-04	ci right 3.976590e-04	k: 1133	n:3020000
C2orf44   3020000 perm   3731 sec   (809 perm/sec)   p_kst 3.751656e-04   p_cons 2.047192e-01   p_joint 1.186093e-03

Joint ci ratio: 6.530358e-02	ci left: 1.148994e-03	ci right 1.226882e-03	k: 3598	n:3030000
Cons ci ratio: 4.438593e-03	ci left: 2.042649e-01	ci right 2.051739e-01	k: 620299	n:3030000
KS ci ratio: 1.160785e-01	ci left: 3.543949e-04	ci right 3.983843e-04	k: 1139	n:3030000
C2orf44   3030000 perm   3754 sec   (807 perm/sec)   p_kst 3.759076e-04   p_cons 2.047191e-01   p_joint 1.187459e-03

Joint ci ratio: 6.517691e-02	ci left: 1.149744e-03	ci right 1.227527e-03	k: 3612	n:3040000
Cons ci ratio: 4.431068e-03	ci left: 2.042817e-01	ci right 2.051892e-01	k: 622395	n:3040000
KS ci ratio: 1.158248e-01	ci left: 3.548262e-04	ci right 3.987662e-04	k: 1144	n:3040000
C2orf44   3040000 perm   3777 sec   (805 perm/sec)   p_kst 3.763158e-04   p_cons 2.047352e-01   p_joint 1.188158e-03

Joint ci ratio: 6.508692e-02	ci left: 1.149200e-03	ci right 1.226834e-03	k: 3622	n:3050000
Cons ci ratio: 4.423987e-03	ci left: 2.042686e-01	ci right 2.051746e-01	k: 624400	n:3050000
KS ci ratio: 1.157238e-01	ci left: 3.542996e-04	ci right 3.981335e-04	k: 1146	n:3050000
C2orf44   3050000 perm   3801 sec   (803 perm/sec)   p_kst 3.757377e-04   p_cons 2.047213e-01   p_joint 1.187541e-03

Joint ci ratio: 6.497045e-02	ci left: 1.149624e-03	ci right 1.227142e-03	k: 3635	n:3060000
Cons ci ratio: 4.416722e-03	ci left: 2.042715e-01	ci right 2.051761e-01	k: 626454	n:3060000
KS ci ratio: 1.156231e-01	ci left: 3.537764e-04	ci right 3.975049e-04	k: 1148	n:3060000
C2orf44   3060000 perm   3824 sec   (800 perm/sec)   p_kst 3.751634e-04   p_cons 2.047235e-01   p_joint 1.187908e-03

Joint ci ratio: 6.485460e-02	ci left: 1.150045e-03	ci right 1.227448e-03	k: 3648	n:3070000
Cons ci ratio: 4.409630e-03	ci left: 2.042644e-01	ci right 2.051674e-01	k: 628477	n:3070000
KS ci ratio: 1.152724e-01	ci left: 3.548383e-04	ci right 3.985561e-04	k: 1155	n:3070000
C2orf44   3070000 perm   3847 sec   (798 perm/sec)   p_kst 3.762215e-04   p_cons 2.047156e-01   p_joint 1.188274e-03

Joint ci ratio: 6.482805e-02	ci left: 1.147269e-03	ci right 1.224453e-03	k: 3651	n:3080000
Cons ci ratio: 4.402712e-03	ci left: 2.042469e-01	ci right 2.051484e-01	k: 630468	n:3080000
KS ci ratio: 1.149744e-01	ci left: 3.555782e-04	ci right 3.992662e-04	k: 1161	n:3080000
C2orf44   3080000 perm   3871 sec   (796 perm/sec)   p_kst 3.769481e-04   p_cons 2.046974e-01   p_joint 1.185390e-03

Joint ci ratio: 6.472181e-02	ci left: 1.147377e-03	ci right 1.224437e-03	k: 3663	n:3090000
Cons ci ratio: 4.395630e-03	ci left: 2.042441e-01	ci right 2.051442e-01	k: 632504	n:3090000
KS ci ratio: 1.148262e-01	ci left: 3.553705e-04	ci right 3.989728e-04	k: 1164	n:3090000
C2orf44   3090000 perm   3894 sec   (794 perm/sec)   p_kst 3.766990e-04   p_cons 2.046939e-01   p_joint 1.185437e-03

Joint ci ratio: 6.463368e-02	ci left: 1.146849e-03	ci right 1.223765e-03	k: 3673	n:3100000
Cons ci ratio: 4.388339e-03	ci left: 2.042593e-01	ci right 2.051580e-01	k: 634596	n:3100000
KS ci ratio: 1.146787e-01	ci left: 3.551641e-04	ci right 3.986813e-04	k: 1167	n:3100000
C2orf44   3100000 perm   3918 sec   (791 perm/sec)   p_kst 3.764516e-04   p_cons 2.047084e-01   p_joint 1.184839e-03

Joint ci ratio: 6.467789e-02	ci left: 1.141580e-03	ci right 1.218196e-03	k: 3668	n:3110000
Cons ci ratio: 4.381257e-03	ci left: 2.042616e-01	ci right 2.051588e-01	k: 636648	n:3110000
KS ci ratio: 1.145317e-01	ci left: 3.549590e-04	ci right 3.983917e-04	k: 1170	n:3110000
C2orf44   3110000 perm   3942 sec   (789 perm/sec)   p_kst 3.762058e-04   p_cons 2.047100e-01   p_joint 1.179421e-03

Joint ci ratio: 6.458116e-02	ci left: 1.141390e-03	ci right 1.217874e-03	k: 3679	n:3120000
Cons ci ratio: 4.374114e-03	ci left: 2.042710e-01	ci right 2.051667e-01	k: 638722	n:3120000
KS ci ratio: 1.142394e-01	ci left: 3.556894e-04	ci right 3.990928e-04	k: 1176	n:3120000
C2orf44   3120000 perm   3966 sec   (787 perm/sec)   p_kst 3.769231e-04   p_cons 2.047186e-01   p_joint 1.179167e-03

Joint ci ratio: 6.441501e-02	ci left: 1.143715e-03	ci right 1.220152e-03	k: 3698	n:3130000
Cons ci ratio: 4.366955e-03	ci left: 2.042841e-01	ci right 2.051784e-01	k: 640808	n:3130000
KS ci ratio: 1.140457e-01	ci left: 3.557945e-04	ci right 3.991322e-04	k: 1180	n:3130000
C2orf44   3130000 perm   3989 sec   (785 perm/sec)   p_kst 3.769968e-04   p_cons 2.047310e-01   p_joint 1.181470e-03

Joint ci ratio: 6.447624e-02	ci left: 1.137880e-03	ci right 1.214001e-03	k: 3691	n:3140000
Cons ci ratio: 4.359711e-03	ci left: 2.043060e-01	ci right 2.051990e-01	k: 642922	n:3140000
KS ci ratio: 1.139493e-01	ci left: 3.552802e-04	ci right 3.985162e-04	k: 1182	n:3140000
C2orf44   3140000 perm   4013 sec   (782 perm/sec)   p_kst 3.764331e-04   p_cons 2.047522e-01   p_joint 1.175478e-03

Joint ci ratio: 6.438911e-02	ci left: 1.137391e-03	ci right 1.213372e-03	k: 3701	n:3150000
Cons ci ratio: 4.352469e-03	ci left: 2.043304e-01	ci right 2.052219e-01	k: 645044	n:3150000
KS ci ratio: 1.137572e-01	ci left: 3.553860e-04	ci right 3.985570e-04	k: 1186	n:3150000
C2orf44   3150000 perm   4037 sec   (780 perm/sec)   p_kst 3.765079e-04   p_cons 2.047759e-01   p_joint 1.174921e-03

Joint ci ratio: 6.420716e-02	ci left: 1.140330e-03	ci right 1.216285e-03	k: 3722	n:3160000
Cons ci ratio: 4.345340e-03	ci left: 2.043488e-01	ci right 2.052390e-01	k: 647148	n:3160000
KS ci ratio: 1.136615e-01	ci left: 3.548762e-04	ci right 3.979467e-04	k: 1188	n:3160000
C2orf44   3160000 perm   4061 sec   (778 perm/sec)   p_kst 3.759494e-04   p_cons 2.047937e-01   p_joint 1.177848e-03

Joint ci ratio: 6.405245e-02	ci left: 1.142320e-03	ci right 1.218217e-03	k: 3740	n:3170000
Cons ci ratio: 4.338249e-03	ci left: 2.043669e-01	ci right 2.052557e-01	k: 649251	n:3170000
KS ci ratio: 1.133757e-01	ci left: 3.555958e-04	ci right 3.986378e-04	k: 1194	n:3170000
C2orf44   3170000 perm   4085 sec   (776 perm/sec)   p_kst 3.766562e-04   p_cons 2.048110e-01   p_joint 1.179811e-03

Joint ci ratio: 6.396703e-02	ci left: 1.141822e-03	ci right 1.217581e-03	k: 3750	n:3180000
Cons ci ratio: 4.331716e-03	ci left: 2.043456e-01	ci right 2.052330e-01	k: 651229	n:3180000
KS ci ratio: 1.133284e-01	ci left: 3.547831e-04	ci right 3.977076e-04	k: 1195	n:3180000
C2orf44   3180000 perm   4108 sec   (774 perm/sec)   p_kst 3.757862e-04   p_cons 2.047890e-01   p_joint 1.179245e-03

Joint ci ratio: 6.386495e-02	ci left: 1.141944e-03	ci right 1.217586e-03	k: 3762	n:3190000
Cons ci ratio: 4.324904e-03	ci left: 2.043476e-01	ci right 2.052335e-01	k: 653281	n:3190000
KS ci ratio: 1.132338e-01	ci left: 3.542801e-04	ci right 3.971056e-04	k: 1197	n:3190000
C2orf44   3190000 perm   4132 sec   (772 perm/sec)   p_kst 3.752351e-04   p_cons 2.047903e-01   p_joint 1.179310e-03

Joint ci ratio: 6.560746e-02	ci left: 1.077809e-03	ci right 1.151224e-03	k: 3565	n:3200000
Cons ci ratio: 4.318215e-03	ci left: 2.043427e-01	ci right 2.052273e-01	k: 655311	n:3200000
KS ci ratio: 1.130923e-01	ci left: 3.540839e-04	ci right 3.968287e-04	k: 1200	n:3200000
C2orf44   3200000 perm   4156 sec   (770 perm/sec)   p_kst 3.750000e-04   p_cons 2.047847e-01   p_joint 1.114063e-03

Joint ci ratio: 6.601657e-02	ci left: 1.060969e-03	ci right 1.133705e-03	k: 3521	n:3210000
Cons ci ratio: 4.311372e-03	ci left: 2.043518e-01	ci right 2.052350e-01	k: 657386	n:3210000
KS ci ratio: 1.129513e-01	ci left: 3.538890e-04	ci right 3.965534e-04	k: 1203	n:3210000
C2orf44   3210000 perm   4180 sec   (768 perm/sec)   p_kst 3.747664e-04   p_cons 2.047931e-01   p_joint 1.096885e-03

Joint ci ratio: 6.591372e-02	ci left: 1.061034e-03	ci right 1.133657e-03	k: 3532	n:3220000
Cons ci ratio: 4.304618e-03	ci left: 2.043565e-01	ci right 2.052384e-01	k: 659447	n:3220000
KS ci ratio: 1.126243e-01	ci left: 3.549026e-04	ci right 3.975571e-04	k: 1210	n:3220000
C2orf44   3220000 perm   4204 sec   (766 perm/sec)   p_kst 3.757764e-04   p_cons 2.047972e-01   p_joint 1.096894e-03

Joint ci ratio: 6.583925e-02	ci left: 1.060185e-03	ci right 1.132665e-03	k: 3540	n:3230000
Cons ci ratio: 4.298011e-03	ci left: 2.043526e-01	ci right 2.052331e-01	k: 661480	n:3230000
KS ci ratio: 1.124851e-01	ci left: 3.547065e-04	ci right 3.972812e-04	k: 1213	n:3230000
C2orf44   3230000 perm   4229 sec   (764 perm/sec)   p_kst 3.755418e-04   p_cons 2.047926e-01   p_joint 1.095975e-03

Joint ci ratio: 6.573722e-02	ci left: 1.060252e-03	ci right 1.132620e-03	k: 3551	n:3240000
Cons ci ratio: 4.291539e-03	ci left: 2.043406e-01	ci right 2.052198e-01	k: 663487	n:3240000
KS ci ratio: 1.123926e-01	ci left: 3.542116e-04	ci right 3.966897e-04	k: 1215	n:3240000
C2orf44   3240000 perm   4253 sec   (762 perm/sec)   p_kst 3.750000e-04   p_cons 2.047799e-01   p_joint 1.095988e-03

Joint ci ratio: 6.567258e-02	ci left: 1.059108e-03	ci right 1.131324e-03	k: 3558	n:3250000
Cons ci ratio: 4.285121e-03	ci left: 2.043269e-01	ci right 2.052047e-01	k: 665488	n:3250000
KS ci ratio: 1.123465e-01	ci left: 3.534208e-04	ci right 3.957854e-04	k: 1216	n:3250000
C2orf44   3250000 perm   4277 sec   (760 perm/sec)   p_kst 3.741538e-04   p_cons 2.047655e-01   p_joint 1.094769e-03

Joint ci ratio: 6.561734e-02	ci left: 1.057669e-03	ci right 1.129724e-03	k: 3564	n:3260000
Cons ci ratio: 4.278748e-03	ci left: 2.043121e-01	ci right 2.051884e-01	k: 667485	n:3260000
KS ci ratio: 1.122083e-01	ci left: 3.532311e-04	ci right 3.955174e-04	k: 1219	n:3260000
C2orf44   3260000 perm   4301 sec   (758 perm/sec)   p_kst 3.739264e-04   p_cons 2.047500e-01   p_joint 1.093252e-03

Joint ci ratio: 6.549801e-02	ci left: 1.058345e-03	ci right 1.130310e-03	k: 3577	n:3270000
Cons ci ratio: 4.272447e-03	ci left: 2.042940e-01	ci right 2.051690e-01	k: 669471	n:3270000
KS ci ratio: 1.120706e-01	ci left: 3.530425e-04	ci right 3.952511e-04	k: 1222	n:3270000
C2orf44   3270000 perm   4325 sec   (756 perm/sec)   p_kst 3.737003e-04   p_cons 2.047312e-01   p_joint 1.093884e-03

Joint ci ratio: 6.553480e-02	ci left: 1.053919e-03	ci right 1.125625e-03	k: 3573	n:3280000
Cons ci ratio: 4.265759e-03	ci left: 2.043076e-01	ci right 2.051813e-01	k: 671561	n:3280000
KS ci ratio: 1.118421e-01	ci left: 3.534479e-04	ci right 3.956131e-04	k: 1227	n:3280000
C2orf44   3280000 perm   4350 sec   (754 perm/sec)   p_kst 3.740854e-04   p_cons 2.047442e-01   p_joint 1.089329e-03

Joint ci ratio: 6.546161e-02	ci left: 1.053107e-03	ci right 1.124675e-03	k: 3581	n:3290000
Cons ci ratio: 4.259289e-03	ci left: 2.043069e-01	ci right 2.051793e-01	k: 673604	n:3290000
KS ci ratio: 1.117967e-01	ci left: 3.526690e-04	ci right 3.947231e-04	k: 1228	n:3290000
C2orf44   3290000 perm   4374 sec   (752 perm/sec)   p_kst 3.732523e-04   p_cons 2.047429e-01   p_joint 1.088450e-03

Joint ci ratio: 6.605512e-02	ci left: 1.030841e-03	ci right 1.101555e-03	k: 3517	n:3300000
Cons ci ratio: 4.252971e-03	ci left: 2.042969e-01	ci right 2.051679e-01	k: 675616	n:3300000
KS ci ratio: 1.115247e-01	ci left: 3.533677e-04	ci right 3.953959e-04	k: 1234	n:3300000
C2orf44   3300000 perm   4399 sec   (750 perm/sec)   p_kst 3.739394e-04   p_cons 2.047321e-01   p_joint 1.065758e-03

Joint ci ratio: 6.591470e-02	ci left: 1.032183e-03	ci right 1.102833e-03	k: 3532	n:3310000
Cons ci ratio: 4.246409e-03	ci left: 2.043077e-01	ci right 2.051774e-01	k: 677697	n:3310000
KS ci ratio: 1.112548e-01	ci left: 3.540624e-04	ci right 3.960645e-04	k: 1240	n:3310000
C2orf44   3310000 perm   4424 sec   (748 perm/sec)   p_kst 3.746224e-04   p_cons 2.047423e-01   p_joint 1.067069e-03

Joint ci ratio: 6.584023e-02	ci left: 1.031444e-03	ci right 1.101961e-03	k: 3540	n:3320000
Cons ci ratio: 4.240257e-03	ci left: 2.042893e-01	ci right 2.051576e-01	k: 679681	n:3320000
KS ci ratio: 1.112548e-01	ci left: 3.529959e-04	ci right 3.948715e-04	k: 1240	n:3320000
C2orf44   3320000 perm   4448 sec   (746 perm/sec)   p_kst 3.734940e-04   p_cons 2.047232e-01   p_joint 1.066265e-03

Joint ci ratio: 6.682035e-02	ci left: 9.979284e-04	ci right 1.067208e-03	k: 3437	n:3330000
Cons ci ratio: 4.233758e-03	ci left: 2.042998e-01	ci right 2.051668e-01	k: 681761	n:3330000
KS ci ratio: 1.111206e-01	ci left: 3.528117e-04	ci right 3.946117e-04	k: 1243	n:3330000
C2orf44   3330000 perm   4472 sec   (745 perm/sec)   p_kst 3.732733e-04   p_cons 2.047330e-01   p_joint 1.032132e-03

Joint ci ratio: 6.678158e-02	ci left: 9.961182e-04	ci right 1.065231e-03	k: 3441	n:3340000
Cons ci ratio: 4.227533e-03	ci left: 2.042913e-01	ci right 2.051571e-01	k: 683778	n:3340000
KS ci ratio: 1.110760e-01	ci left: 3.520464e-04	ci right 3.937379e-04	k: 1244	n:3340000
C2orf44   3340000 perm   4497 sec   (743 perm/sec)   p_kst 3.724551e-04   p_cons 2.047240e-01   p_joint 1.030240e-03

Joint ci ratio: 6.669445e-02	ci left: 9.957864e-04	ci right 1.064782e-03	k: 3450	n:3350000
Cons ci ratio: 4.221123e-03	ci left: 2.042994e-01	ci right 2.051638e-01	k: 685850	n:3350000
KS ci ratio: 1.108093e-01	ci left: 3.527369e-04	ci right 3.944033e-04	k: 1250	n:3350000
C2orf44   3350000 perm   4522 sec   (741 perm/sec)   p_kst 3.731343e-04   p_cons 2.047313e-01   p_joint 1.029851e-03

Joint ci ratio: 6.903707e-02	ci left: 9.255305e-04	ci right 9.920010e-04	k: 3220	n:3360000
Cons ci ratio: 4.214853e-03	ci left: 2.042987e-01	ci right 2.051619e-01	k: 687893	n:3360000
KS ci ratio: 1.105445e-01	ci left: 3.534234e-04	ci right 3.950646e-04	k: 1256	n:3360000
C2orf44   3360000 perm   4547 sec   (739 perm/sec)   p_kst 3.738095e-04   p_cons 2.047301e-01   p_joint 9.583333e-04

Joint ci ratio: 6.894083e-02	ci left: 9.254087e-04	ci right 9.917741e-04	k: 3229	n:3370000
Cons ci ratio: 4.208619e-03	ci left: 2.042975e-01	ci right 2.051594e-01	k: 689934	n:3370000
KS ci ratio: 1.104128e-01	ci left: 3.532403e-04	ci right 3.948071e-04	k: 1259	n:3370000
C2orf44   3370000 perm   4572 sec   (737 perm/sec)   p_kst 3.735905e-04   p_cons 2.047282e-01   p_joint 9.581602e-04

Joint ci ratio: 6.887693e-02	ci left: 9.244153e-04	ci right 9.906456e-04	k: 3235	n:3380000
Cons ci ratio: 4.202321e-03	ci left: 2.043034e-01	ci right 2.051640e-01	k: 691999	n:3380000
KS ci ratio: 1.102380e-01	ci left: 3.533459e-04	ci right 3.948551e-04	k: 1263	n:3380000
C2orf44   3380000 perm   4597 sec   (735 perm/sec)   p_kst 3.736686e-04   p_cons 2.047334e-01   p_joint 9.571006e-04

Joint ci ratio: 6.877074e-02	ci left: 9.245875e-04	ci right 9.907239e-04	k: 3245	n:3390000
Cons ci ratio: 4.196017e-03	ci left: 2.043119e-01	ci right 2.051712e-01	k: 694073	n:3390000
KS ci ratio: 1.101944e-01	ci left: 3.525905e-04	ci right 3.939935e-04	k: 1264	n:3390000
C2orf44   3390000 perm   4622 sec   (733 perm/sec)   p_kst 3.728614e-04   p_cons 2.047413e-01   p_joint 9.572271e-04

Joint ci ratio: 6.868617e-02	ci left: 9.241807e-04	ci right 9.902034e-04	k: 3253	n:3400000
Cons ci ratio: 4.189662e-03	ci left: 2.043265e-01	ci right 2.051846e-01	k: 696168	n:3400000
KS ci ratio: 1.100640e-01	ci left: 3.524115e-04	ci right 3.937413e-04	k: 1267	n:3400000
C2orf44   3400000 perm   4647 sec   (732 perm/sec)   p_kst 3.726471e-04   p_cons 2.047553e-01   p_joint 9.567647e-04

Joint ci ratio: 6.860191e-02	ci left: 9.237762e-04	ci right 9.896859e-04	k: 3261	n:3410000
Cons ci ratio: 4.183294e-03	ci left: 2.043442e-01	ci right 2.052011e-01	k: 698274	n:3410000
KS ci ratio: 1.099774e-01	ci left: 3.519484e-04	ci right 3.931893e-04	k: 1269	n:3410000
C2orf44   3410000 perm   4673 sec   (730 perm/sec)   p_kst 3.721408e-04   p_cons 2.047724e-01   p_joint 9.563050e-04

Joint ci ratio: 6.844467e-02	ci left: 9.253860e-04	ci right 9.912532e-04	k: 3276	n:3420000
Cons ci ratio: 4.176888e-03	ci left: 2.043671e-01	ci right 2.052228e-01	k: 700398	n:3420000
KS ci ratio: 1.098477e-01	ci left: 3.517724e-04	ci right 3.929409e-04	k: 1272	n:3420000
C2orf44   3420000 perm   4698 sec   (728 perm/sec)   p_kst 3.719298e-04   p_cons 2.047947e-01   p_joint 9.578947e-04

Joint ci ratio: 6.890939e-02	ci left: 9.100801e-04	ci right 9.753153e-04	k: 3232	n:3430000
Cons ci ratio: 4.170712e-03	ci left: 2.043742e-01	ci right 2.052286e-01	k: 702468	n:3430000
KS ci ratio: 1.095469e-01	ci left: 3.527316e-04	ci right 3.938921e-04	k: 1279	n:3430000
C2orf44   3430000 perm   4724 sec   (726 perm/sec)   p_kst 3.728863e-04   p_cons 2.048012e-01   p_joint 9.422741e-04

Joint ci ratio: 6.884557e-02	ci left: 9.091486e-04	ci right 9.742543e-04	k: 3238	n:3440000
Cons ci ratio: 4.164698e-03	ci left: 2.043707e-01	ci right 2.052239e-01	k: 704502	n:3440000
KS ci ratio: 1.094187e-01	ci left: 3.525545e-04	ci right 3.936430e-04	k: 1282	n:3440000
C2orf44   3440000 perm   4749 sec   (724 perm/sec)   p_kst 3.726744e-04   p_cons 2.047971e-01   p_joint 9.412791e-04

Joint ci ratio: 6.872894e-02	ci left: 9.096470e-04	ci right 9.746736e-04	k: 3249	n:3450000
Cons ci ratio: 4.158776e-03	ci left: 2.043621e-01	ci right 2.052140e-01	k: 706518	n:3450000
KS ci ratio: 1.093336e-01	ci left: 3.520964e-04	ci right 3.930976e-04	k: 1284	n:3450000
C2orf44   3450000 perm   4775 sec   (723 perm/sec)   p_kst 3.721739e-04   p_cons 2.047878e-01   p_joint 9.417391e-04

Joint ci ratio: 6.935123e-02	ci left: 8.905440e-04	ci right 9.548046e-04	k: 3191	n:3460000
Cons ci ratio: 4.152677e-03	ci left: 2.043694e-01	ci right 2.052201e-01	k: 708589	n:3460000
KS ci ratio: 1.092062e-01	ci left: 3.519222e-04	ci right 3.928522e-04	k: 1287	n:3460000
C2orf44   3460000 perm   4801 sec   (721 perm/sec)   p_kst 3.719653e-04   p_cons 2.047945e-01   p_joint 9.222543e-04

Joint ci ratio: 6.917800e-02	ci left: 8.925087e-04	ci right 9.567438e-04	k: 3207	n:3470000
Cons ci ratio: 4.146802e-03	ci left: 2.043611e-01	ci right 2.052106e-01	k: 710606	n:3470000
KS ci ratio: 1.089106e-01	ci left: 3.528702e-04	ci right 3.937924e-04	k: 1294	n:3470000
C2orf44   3470000 perm   4827 sec   (719 perm/sec)   p_kst 3.729107e-04   p_cons 2.047856e-01   p_joint 9.242075e-04

Joint ci ratio: 6.162959e-02	ci left: 1.125414e-03	ci right 1.197259e-03	k: 4040	n:3480000
Cons ci ratio: 4.140715e-03	ci left: 2.043715e-01	ci right 2.052198e-01	k: 712688	n:3480000
KS ci ratio: 1.088266e-01	ci left: 3.524153e-04	ci right 3.932511e-04	k: 1296	n:3480000
C2orf44   3480000 perm   4852 sec   (717 perm/sec)   p_kst 3.724138e-04   p_cons 2.047954e-01   p_joint 1.160920e-03

Joint ci ratio: 6.184457e-02	ci left: 1.114290e-03	ci right 1.185682e-03	k: 4012	n:3490000
Cons ci ratio: 4.134822e-03	ci left: 2.043687e-01	ci right 2.052157e-01	k: 714724	n:3490000
KS ci ratio: 1.087847e-01	ci left: 3.516842e-04	ci right 3.924187e-04	k: 1297	n:3490000
C2orf44   3490000 perm   4878 sec   (715 perm/sec)   p_kst 3.716332e-04   p_cons 2.047920e-01   p_joint 1.149570e-03

Joint ci ratio: 6.176767e-02	ci left: 1.113920e-03	ci right 1.185196e-03	k: 4022	n:3500000
Cons ci ratio: 4.128886e-03	ci left: 2.043713e-01	ci right 2.052172e-01	k: 716779	n:3500000
KS ci ratio: 1.086175e-01	ci left: 3.517912e-04	ci right 3.924714e-04	k: 1301	n:3500000
C2orf44   3500000 perm   4904 sec   (714 perm/sec)   p_kst 3.717143e-04   p_cons 2.047940e-01   p_joint 1.149143e-03

Joint ci ratio: 6.169106e-02	ci left: 1.113551e-03	ci right 1.184712e-03	k: 4032	n:3510000
Cons ci ratio: 4.122899e-03	ci left: 2.043799e-01	ci right 2.052246e-01	k: 718855	n:3510000
KS ci ratio: 1.083680e-01	ci left: 3.524520e-04	ci right 3.931090e-04	k: 1307	n:3510000
C2orf44   3510000 perm   4931 sec   (712 perm/sec)   p_kst 3.723647e-04   p_cons 2.048020e-01   p_joint 1.148718e-03

Joint ci ratio: 6.161473e-02	ci left: 1.113185e-03	ci right 1.184231e-03	k: 4042	n:3520000
Cons ci ratio: 4.116991e-03	ci left: 2.043842e-01	ci right 2.052277e-01	k: 720916	n:3520000
KS ci ratio: 1.082027e-01	ci left: 3.525563e-04	ci right 3.931594e-04	k: 1311	n:3520000
C2orf44   3520000 perm   4957 sec   (710 perm/sec)   p_kst 3.724432e-04   p_cons 2.048057e-01   p_joint 1.148295e-03

Joint ci ratio: 6.153109e-02	ci left: 1.113099e-03	ci right 1.184040e-03	k: 4053	n:3530000
Cons ci ratio: 4.111406e-03	ci left: 2.043650e-01	ci right 2.052072e-01	k: 722894	n:3530000
KS ci ratio: 1.080381e-01	ci left: 3.526601e-04	ci right 3.932094e-04	k: 1315	n:3530000
C2orf44   3530000 perm   4983 sec   (708 perm/sec)   p_kst 3.725212e-04   p_cons 2.047858e-01   p_joint 1.148159e-03

Joint ci ratio: 6.181424e-02	ci left: 1.099664e-03	ci right 1.170083e-03	k: 4016	n:3540000
Cons ci ratio: 4.105577e-03	ci left: 2.043670e-01	ci right 2.052080e-01	k: 724947	n:3540000
KS ci ratio: 1.078335e-01	ci left: 3.530381e-04	ci right 3.935491e-04	k: 1320	n:3540000
C2orf44   3540000 perm   5010 sec   (707 perm/sec)   p_kst 3.728814e-04   p_cons 2.047873e-01   p_joint 1.134463e-03

Joint ci ratio: 6.245580e-02	ci left: 1.073826e-03	ci right 1.143330e-03	k: 3934	n:3550000
Cons ci ratio: 4.099641e-03	ci left: 2.043795e-01	ci right 2.052193e-01	k: 727037	n:3550000
KS ci ratio: 1.077520e-01	ci left: 3.525919e-04	ci right 3.930191e-04	k: 1322	n:3550000
C2orf44   3550000 perm   5036 sec   (705 perm/sec)   p_kst 3.723944e-04   p_cons 2.047992e-01   p_joint 1.108169e-03

Joint ci ratio: 6.237661e-02	ci left: 1.073575e-03	ci right 1.142971e-03	k: 3944	n:3560000
Cons ci ratio: 4.094073e-03	ci left: 2.043646e-01	ci right 2.052033e-01	k: 729030	n:3560000
KS ci ratio: 1.075894e-01	ci left: 3.526948e-04	ci right 3.930690e-04	k: 1326	n:3560000
C2orf44   3560000 perm   5062 sec   (703 perm/sec)   p_kst 3.724719e-04   p_cons 2.047837e-01   p_joint 1.107865e-03

Joint ci ratio: 6.228194e-02	ci left: 1.073877e-03	ci right 1.143183e-03	k: 3956	n:3570000
Cons ci ratio: 4.088194e-03	ci left: 2.043764e-01	ci right 2.052140e-01	k: 731118	n:3570000
KS ci ratio: 1.074276e-01	ci left: 3.527972e-04	ci right 3.931185e-04	k: 1330	n:3570000
C2orf44   3570000 perm   5089 sec   (702 perm/sec)   p_kst 3.725490e-04   p_cons 2.047950e-01   p_joint 1.108123e-03

Joint ci ratio: 6.221911e-02	ci left: 1.073077e-03	ci right 1.142259e-03	k: 3964	n:3580000
Cons ci ratio: 4.082732e-03	ci left: 2.043569e-01	ci right 2.051933e-01	k: 733094	n:3580000
KS ci ratio: 1.072666e-01	ci left: 3.528990e-04	ci right 3.931677e-04	k: 1334	n:3580000
C2orf44   3580000 perm   5116 sec   (700 perm/sec)   p_kst 3.726257e-04   p_cons 2.047749e-01   p_joint 1.107263e-03

Joint ci ratio: 6.236107e-02	ci left: 1.065152e-03	ci right 1.133986e-03	k: 3946	n:3590000
Cons ci ratio: 4.077027e-03	ci left: 2.043587e-01	ci right 2.051939e-01	k: 735146	n:3590000
KS ci ratio: 1.071463e-01	ci left: 3.527292e-04	ci right 3.929306e-04	k: 1337	n:3590000
C2orf44   3590000 perm   5142 sec   (698 perm/sec)   p_kst 3.724234e-04   p_cons 2.047760e-01   p_joint 1.099164e-03

Joint ci ratio: 6.241660e-02	ci left: 1.060279e-03	ci right 1.128861e-03	k: 3939	n:3600000
Cons ci ratio: 4.071523e-03	ci left: 2.043463e-01	ci right 2.051803e-01	k: 737147	n:3600000
KS ci ratio: 1.070264e-01	ci left: 3.525605e-04	ci right 3.926948e-04	k: 1340	n:3600000
C2orf44   3600000 perm   5169 sec   (696 perm/sec)   p_kst 3.722222e-04   p_cons 2.047631e-01   p_joint 1.094167e-03

Joint ci ratio: 6.233755e-02	ci left: 1.060069e-03	ci right 1.128547e-03	k: 3949	n:3610000
Cons ci ratio: 4.065920e-03	ci left: 2.043437e-01	ci right 2.051765e-01	k: 739183	n:3610000
KS ci ratio: 1.068274e-01	ci left: 3.529318e-04	ci right 3.930290e-04	k: 1345	n:3610000
C2orf44   3610000 perm   5196 sec   (695 perm/sec)   p_kst 3.725762e-04   p_cons 2.047598e-01   p_joint 1.093906e-03

Joint ci ratio: 6.221949e-02	ci left: 1.061219e-03	ci right 1.129638e-03	k: 3964	n:3620000
Cons ci ratio: 4.060302e-03	ci left: 2.043441e-01	ci right 2.051757e-01	k: 741230	n:3620000
KS ci ratio: 1.067085e-01	ci left: 3.527635e-04	ci right 3.927942e-04	k: 1348	n:3620000
C2orf44   3620000 perm   5223 sec   (693 perm/sec)   p_kst 3.723757e-04   p_cons 2.047597e-01   p_joint 1.095028e-03

Joint ci ratio: 5.793109e-02	ci left: 1.223279e-03	ci right 1.296528e-03	k: 4572	n:3630000
Cons ci ratio: 4.054687e-03	ci left: 2.043461e-01	ci right 2.051766e-01	k: 743283	n:3630000
KS ci ratio: 1.065507e-01	ci left: 3.528642e-04	ci right 3.928434e-04	k: 1352	n:3630000
C2orf44   3630000 perm   5250 sec   (691 perm/sec)   p_kst 3.724518e-04   p_cons 2.047612e-01   p_joint 1.259504e-03

Joint ci ratio: 5.817370e-02	ci left: 1.209630e-03	ci right 1.282376e-03	k: 4534	n:3640000
Cons ci ratio: 4.049280e-03	ci left: 2.043334e-01	ci right 2.051627e-01	k: 745282	n:3640000
KS ci ratio: 1.065113e-01	ci left: 3.521622e-04	ci right 3.920462e-04	k: 1353	n:3640000
C2orf44   3640000 perm   5277 sec   (690 perm/sec)   p_kst 3.717033e-04   p_cons 2.047478e-01   p_joint 1.245604e-03

Joint ci ratio: 5.809689e-02	ci left: 1.209556e-03	ci right 1.282198e-03	k: 4546	n:3650000
Cons ci ratio: 4.043683e-03	ci left: 2.043376e-01	ci right 2.051658e-01	k: 747343	n:3650000
KS ci ratio: 1.064328e-01	ci left: 3.517307e-04	ci right 3.915346e-04	k: 1355	n:3650000
C2orf44   3650000 perm   5305 sec   (688 perm/sec)   p_kst 3.712329e-04   p_cons 2.047515e-01   p_joint 1.245479e-03

Joint ci ratio: 5.805864e-02	ci left: 1.207867e-03	ci right 1.280358e-03	k: 4552	n:3660000
Cons ci ratio: 4.038130e-03	ci left: 2.043402e-01	ci right 2.051673e-01	k: 749398	n:3660000
KS ci ratio: 1.064329e-01	ci left: 3.507697e-04	ci right 3.904649e-04	k: 1355	n:3660000
C2orf44   3660000 perm   5333 sec   (686 perm/sec)   p_kst 3.702186e-04   p_cons 2.047536e-01   p_joint 1.243716e-03

Joint ci ratio: 5.564510e-02	ci left: 1.312827e-03	ci right 1.388236e-03	k: 4955	n:3670000
Cons ci ratio: 4.032704e-03	ci left: 2.043344e-01	ci right 2.051603e-01	k: 751422	n:3670000
KS ci ratio: 1.063937e-01	ci left: 3.500792e-04	ci right 3.896807e-04	k: 1356	n:3670000
C2orf44   3670000 perm   5360 sec   (685 perm/sec)   p_kst 3.694823e-04   p_cons 2.047471e-01   p_joint 1.350136e-03

Joint ci ratio: 5.556667e-02	ci left: 1.313011e-03	ci right 1.388321e-03	k: 4969	n:3680000
Cons ci ratio: 4.027300e-03	ci left: 2.043286e-01	ci right 2.051534e-01	k: 753446	n:3680000
KS ci ratio: 1.062372e-01	ci left: 3.501859e-04	ci right 3.897376e-04	k: 1360	n:3680000
C2orf44   3680000 perm   5386 sec   (683 perm/sec)   p_kst 3.695652e-04   p_cons 2.047408e-01   p_joint 1.350272e-03

Joint ci ratio: 5.549972e-02	ci left: 1.312659e-03	ci right 1.387856e-03	k: 4981	n:3690000
Cons ci ratio: 4.021948e-03	ci left: 2.043204e-01	ci right 2.051440e-01	k: 755461	n:3690000
KS ci ratio: 1.061203e-01	ci left: 3.500283e-04	ci right 3.895160e-04	k: 1363	n:3690000
C2orf44   3690000 perm   5414 sec   (682 perm/sec)   p_kst 3.693767e-04   p_cons 2.047320e-01   p_joint 1.349864e-03

Joint ci ratio: 5.538306e-02	ci left: 1.314708e-03	ci right 1.389859e-03	k: 5002	n:3700000
Cons ci ratio: 4.016460e-03	ci left: 2.043249e-01	ci right 2.051475e-01	k: 757523	n:3700000
KS ci ratio: 1.058490e-01	ci left: 3.509241e-04	ci right 3.904053e-04	k: 1370	n:3700000
C2orf44   3700000 perm   5442 sec   (680 perm/sec)   p_kst 3.702703e-04   p_cons 2.047359e-01   p_joint 1.351892e-03

Joint ci ratio: 5.585467e-02	ci left: 1.288838e-03	ci right 1.363157e-03	k: 4918	n:3710000
Cons ci ratio: 4.011091e-03	ci left: 2.043216e-01	ci right 2.051430e-01	k: 759556	n:3710000
KS ci ratio: 1.057334e-01	ci left: 3.507654e-04	ci right 3.901830e-04	k: 1373	n:3710000
C2orf44   3710000 perm   5469 sec   (678 perm/sec)   p_kst 3.700809e-04   p_cons 2.047321e-01   p_joint 1.325606e-03

Joint ci ratio: 5.589461e-02	ci left: 1.283518e-03	ci right 1.357585e-03	k: 4911	n:3720000
Cons ci ratio: 4.005661e-03	ci left: 2.043250e-01	ci right 2.051454e-01	k: 761614	n:3720000
KS ci ratio: 1.056182e-01	ci left: 3.506076e-04	ci right 3.899619e-04	k: 1376	n:3720000
C2orf44   3720000 perm   5497 sec   (677 perm/sec)   p_kst 3.698925e-04   p_cons 2.047349e-01   p_joint 1.320161e-03

Joint ci ratio: 5.583214e-02	ci left: 1.282984e-03	ci right 1.356935e-03	k: 4922	n:3730000
Cons ci ratio: 4.000243e-03	ci left: 2.043292e-01	ci right 2.051485e-01	k: 763675	n:3730000
KS ci ratio: 1.054651e-01	ci left: 3.507117e-04	ci right 3.900171e-04	k: 1380	n:3730000
C2orf44   3730000 perm   5525 sec   (675 perm/sec)   p_kst 3.699732e-04   p_cons 2.047386e-01   p_joint 1.319571e-03

Joint ci ratio: 5.592331e-02	ci left: 1.275335e-03	ci right 1.348970e-03	k: 4906	n:3740000
Cons ci ratio: 3.994853e-03	ci left: 2.043329e-01	ci right 2.051510e-01	k: 765734	n:3740000
KS ci ratio: 1.053507e-01	ci left: 3.505550e-04	ci right 3.897975e-04	k: 1383	n:3740000
C2orf44   3740000 perm   5552 sec   (674 perm/sec)   p_kst 3.697861e-04   p_cons 2.047417e-01   p_joint 1.311765e-03

Joint ci ratio: 5.585507e-02	ci left: 1.275090e-03	ci right 1.348617e-03	k: 4918	n:3750000
Cons ci ratio: 3.989407e-03	ci left: 2.043429e-01	ci right 2.051600e-01	k: 767817	n:3750000
KS ci ratio: 1.052368e-01	ci left: 3.503991e-04	ci right 3.895791e-04	k: 1386	n:3750000
C2orf44   3750000 perm   5580 sec   (672 perm/sec)   p_kst 3.696000e-04   p_cons 2.047512e-01   p_joint 1.311467e-03

Joint ci ratio: 5.614737e-02	ci left: 1.258324e-03	ci right 1.331277e-03	k: 4867	n:3760000
Cons ci ratio: 3.984119e-03	ci left: 2.043417e-01	ci right 2.051577e-01	k: 769858	n:3760000
KS ci ratio: 1.049722e-01	ci left: 3.512800e-04	ci right 3.904536e-04	k: 1393	n:3760000
C2orf44   3760000 perm   5608 sec   (670 perm/sec)   p_kst 3.704787e-04   p_cons 2.047495e-01   p_joint 1.294415e-03

Joint ci ratio: 5.607255e-02	ci left: 1.258387e-03	ci right 1.331242e-03	k: 4880	n:3770000
Cons ci ratio: 3.979018e-03	ci left: 2.043270e-01	ci right 2.051419e-01	k: 771848	n:3770000
KS ci ratio: 1.047844e-01	ci left: 3.516397e-04	ci right 3.907790e-04	k: 1398	n:3770000
C2orf44   3770000 perm   5636 sec   (669 perm/sec)   p_kst 3.708223e-04   p_cons 2.047342e-01   p_joint 1.294430e-03

Joint ci ratio: 5.602669e-02	ci left: 1.257144e-03	ci right 1.329867e-03	k: 4888	n:3780000
Cons ci ratio: 3.973775e-03	ci left: 2.043256e-01	ci right 2.051394e-01	k: 773888	n:3780000
KS ci ratio: 1.046722e-01	ci left: 3.514823e-04	ci right 3.905596e-04	k: 1401	n:3780000
C2orf44   3780000 perm   5664 sec   (667 perm/sec)   p_kst 3.706349e-04   p_cons 2.047323e-01   p_joint 1.293122e-03

Joint ci ratio: 5.248075e-02	ci left: 1.431339e-03	ci right 1.508740e-03	k: 5570	n:3790000
Cons ci ratio: 3.968691e-03	ci left: 2.043129e-01	ci right 2.051256e-01	k: 775885	n:3790000
KS ci ratio: 1.043378e-01	ci left: 3.528675e-04	ci right 3.919658e-04	k: 1410	n:3790000
C2orf44   3790000 perm   5692 sec   (666 perm/sec)   p_kst 3.720317e-04   p_cons 2.047190e-01   p_joint 1.469657e-03

Joint ci ratio: 5.242433e-02	ci left: 1.430689e-03	ci right 1.507969e-03	k: 5582	n:3800000
Cons ci ratio: 3.963668e-03	ci left: 2.042968e-01	ci right 2.051084e-01	k: 777869	n:3800000
KS ci ratio: 1.042639e-01	ci left: 3.524515e-04	ci right 3.914744e-04	k: 1412	n:3800000
C2orf44   3800000 perm   5720 sec   (664 perm/sec)   p_kst 3.715789e-04   p_cons 2.047024e-01   p_joint 1.468947e-03

Joint ci ratio: 5.278067e-02	ci left: 1.407507e-03	ci right 1.484067e-03	k: 5507	n:3810000
Cons ci ratio: 3.958342e-03	ci left: 2.043073e-01	ci right 2.051178e-01	k: 779954	n:3810000
KS ci ratio: 1.041167e-01	ci left: 3.525489e-04	ci right 3.915241e-04	k: 1416	n:3810000
C2orf44   3810000 perm   5748 sec   (663 perm/sec)   p_kst 3.716535e-04   p_cons 2.047123e-01   p_joint 1.445407e-03

Joint ci ratio: 5.279997e-02	ci left: 1.402789e-03	ci right 1.479121e-03	k: 5503	n:3820000
Cons ci ratio: 3.953180e-03	ci left: 2.043059e-01	ci right 2.051154e-01	k: 781994	n:3820000
KS ci ratio: 1.039700e-01	ci left: 3.526459e-04	ci right 3.915735e-04	k: 1420	n:3820000
C2orf44   3820000 perm   5776 sec   (661 perm/sec)   p_kst 3.717277e-04   p_cons 2.047105e-01   p_joint 1.440576e-03

Joint ci ratio: 5.286263e-02	ci left: 1.395777e-03	ci right 1.471820e-03	k: 5490	n:3830000
Cons ci ratio: 3.947890e-03	ci left: 2.043169e-01	ci right 2.051253e-01	k: 784081	n:3830000
KS ci ratio: 1.038605e-01	ci left: 3.524881e-04	ci right 3.913548e-04	k: 1423	n:3830000
C2orf44   3830000 perm   5805 sec   (660 perm/sec)   p_kst 3.715405e-04   p_cons 2.047209e-01   p_joint 1.433420e-03

Joint ci ratio: 5.288202e-02	ci left: 1.391114e-03	ci right 1.466932e-03	k: 5486	n:3840000
Cons ci ratio: 3.942658e-03	ci left: 2.043246e-01	ci right 2.051321e-01	k: 786156	n:3840000
KS ci ratio: 1.038241e-01	ci left: 3.518238e-04	ci right 3.906028e-04	k: 1424	n:3840000
C2orf44   3840000 perm   5833 sec   (658 perm/sec)   p_kst 3.708333e-04   p_cons 2.047281e-01   p_joint 1.428646e-03

Joint ci ratio: 5.280027e-02	ci left: 1.391858e-03	ci right 1.467596e-03	k: 5503	n:3850000
Cons ci ratio: 3.937586e-03	ci left: 2.043209e-01	ci right 2.051273e-01	k: 788187	n:3850000
KS ci ratio: 1.036424e-01	ci left: 3.521750e-04	ci right 3.909206e-04	k: 1429	n:3850000
C2orf44   3850000 perm   5862 sec   (657 perm/sec)   p_kst 3.711688e-04   p_cons 2.047239e-01   p_joint 1.429351e-03

Joint ci ratio: 5.298870e-02	ci left: 1.378282e-03	ci right 1.453557e-03	k: 5464	n:3860000
Cons ci ratio: 3.932548e-03	ci left: 2.043160e-01	ci right 2.051213e-01	k: 790213	n:3860000
KS ci ratio: 1.036062e-01	ci left: 3.515149e-04	ci right 3.901737e-04	k: 1430	n:3860000
C2orf44   3860000 perm   5890 sec   (655 perm/sec)   p_kst 3.704663e-04   p_cons 2.047184e-01   p_joint 1.415544e-03

Joint ci ratio: 5.290163e-02	ci left: 1.379310e-03	ci right 1.454514e-03	k: 5482	n:3870000
Cons ci ratio: 3.927387e-03	ci left: 2.043229e-01	ci right 2.051272e-01	k: 792285	n:3870000
KS ci ratio: 1.033896e-01	ci left: 3.521169e-04	ci right 3.907560e-04	k: 1436	n:3870000
C2orf44   3870000 perm   5918 sec   (654 perm/sec)   p_kst 3.710594e-04   p_cons 2.047248e-01   p_joint 1.416537e-03

Joint ci ratio: 5.281979e-02	ci left: 1.380079e-03	ci right 1.455204e-03	k: 5499	n:3880000
Cons ci ratio: 3.922274e-03	ci left: 2.043275e-01	ci right 2.051307e-01	k: 794348	n:3880000
KS ci ratio: 1.033178e-01	ci left: 3.517115e-04	ci right 3.902776e-04	k: 1438	n:3880000
C2orf44   3880000 perm   5947 sec   (652 perm/sec)   p_kst 3.706186e-04   p_cons 2.047289e-01   p_joint 1.417268e-03

Joint ci ratio: 5.275748e-02	ci left: 1.379829e-03	ci right 1.454849e-03	k: 5512	n:3890000
Cons ci ratio: 3.917054e-03	ci left: 2.043425e-01	ci right 2.051448e-01	k: 796452	n:3890000
KS ci ratio: 1.031745e-01	ci left: 3.518091e-04	ci right 3.903292e-04	k: 1442	n:3890000
C2orf44   3890000 perm   5976 sec   (651 perm/sec)   p_kst 3.706941e-04   p_cons 2.047434e-01   p_joint 1.416967e-03

Joint ci ratio: 5.270495e-02	ci left: 1.379074e-03	ci right 1.453977e-03	k: 5523	n:3900000
Cons ci ratio: 3.912110e-03	ci left: 2.043363e-01	ci right 2.051375e-01	k: 798473	n:3900000
KS ci ratio: 1.030674e-01	ci left: 3.516564e-04	ci right 3.901174e-04	k: 1445	n:3900000
C2orf44   3900000 perm   6005 sec   (649 perm/sec)   p_kst 3.705128e-04   p_cons 2.047367e-01   p_joint 1.416154e-03

Joint ci ratio: 5.266210e-02	ci left: 1.377819e-03	ci right 1.452590e-03	k: 5532	n:3910000
Cons ci ratio: 3.907032e-03	ci left: 2.043428e-01	ci right 2.051430e-01	k: 800544	n:3910000
KS ci ratio: 1.028188e-01	ci left: 3.525012e-04	ci right 3.909560e-04	k: 1452	n:3910000
C2orf44   3910000 perm   6033 sec   (648 perm/sec)   p_kst 3.713555e-04   p_cons 2.047427e-01   p_joint 1.414834e-03

Joint ci ratio: 5.260510e-02	ci left: 1.377325e-03	ci right 1.451986e-03	k: 5544	n:3920000
Cons ci ratio: 3.901933e-03	ci left: 2.043527e-01	ci right 2.051518e-01	k: 802628	n:3920000
KS ci ratio: 1.027128e-01	ci left: 3.523476e-04	ci right 3.907436e-04	k: 1455	n:3920000
C2orf44   3920000 perm   6062 sec   (647 perm/sec)   p_kst 3.711735e-04   p_cons 2.047520e-01   p_joint 1.414286e-03

Joint ci ratio: 5.324364e-02	ci left: 1.340676e-03	ci right 1.414260e-03	k: 5412	n:3930000
Cons ci ratio: 3.897086e-03	ci left: 2.043431e-01	ci right 2.051413e-01	k: 804636	n:3930000
KS ci ratio: 1.027129e-01	ci left: 3.514511e-04	ci right 3.897494e-04	k: 1455	n:3930000
C2orf44   3930000 perm   6091 sec   (645 perm/sec)   p_kst 3.702290e-04   p_cons 2.047420e-01   p_joint 1.377099e-03

Joint ci ratio: 5.326344e-02	ci left: 1.336272e-03	ci right 1.409642e-03	k: 5408	n:3940000
Cons ci ratio: 3.892175e-03	ci left: 2.043405e-01	ci right 2.051376e-01	k: 806671	n:3940000
KS ci ratio: 1.026424e-01	ci left: 3.510536e-04	ci right 3.892808e-04	k: 1457	n:3940000
C2orf44   3940000 perm   6120 sec   (644 perm/sec)   p_kst 3.697970e-04   p_cons 2.047388e-01   p_joint 1.372589e-03

Joint ci ratio: 5.316520e-02	ci left: 1.337885e-03	ci right 1.411204e-03	k: 5428	n:3950000
Cons ci ratio: 3.887255e-03	ci left: 2.043401e-01	ci right 2.051362e-01	k: 808715	n:3950000
KS ci ratio: 1.025019e-01	ci left: 3.511516e-04	ci right 3.893339e-04	k: 1461	n:3950000
C2orf44   3950000 perm   6149 sec   (642 perm/sec)   p_kst 3.698734e-04   p_cons 2.047380e-01   p_joint 1.374177e-03

Joint ci ratio: 5.357697e-02	ci left: 1.313826e-03	ci right 1.386401e-03	k: 5345	n:3960000
Cons ci ratio: 3.882228e-03	ci left: 2.043504e-01	ci right 2.051455e-01	k: 810801	n:3960000
KS ci ratio: 1.022574e-01	ci left: 3.519872e-04	ci right 3.901637e-04	k: 1468	n:3960000
C2orf44   3960000 perm   6178 sec   (641 perm/sec)   p_kst 3.707071e-04   p_cons 2.047477e-01   p_joint 1.349747e-03

Joint ci ratio: 5.351695e-02	ci left: 1.313499e-03	ci right 1.385972e-03	k: 5357	n:3970000
Cons ci ratio: 3.877295e-03	ci left: 2.043543e-01	ci right 2.051484e-01	k: 812862	n:3970000
KS ci ratio: 1.021878e-01	ci left: 3.515915e-04	ci right 3.896976e-04	k: 1470	n:3970000
C2orf44   3970000 perm   6207 sec   (640 perm/sec)   p_kst 3.702771e-04   p_cons 2.047511e-01   p_joint 1.349370e-03

Joint ci ratio: 5.346711e-02	ci left: 1.312677e-03	ci right 1.385036e-03	k: 5367	n:3980000
Cons ci ratio: 3.872392e-03	ci left: 2.043572e-01	ci right 2.051503e-01	k: 814919	n:3980000
KS ci ratio: 1.020492e-01	ci left: 3.516875e-04	ci right 3.897491e-04	k: 1474	n:3980000
C2orf44   3980000 perm   6237 sec   (638 perm/sec)   p_kst 3.703518e-04   p_cons 2.047535e-01   p_joint 1.348492e-03

Joint ci ratio: 5.340745e-02	ci left: 1.312355e-03	ci right 1.384613e-03	k: 5379	n:3990000
Cons ci ratio: 3.867651e-03	ci left: 2.043480e-01	ci right 2.051401e-01	k: 816928	n:3990000
KS ci ratio: 1.019111e-01	ci left: 3.517830e-04	ci right 3.898004e-04	k: 1478	n:3990000
C2orf44   3990000 perm   6266 sec   (637 perm/sec)   p_kst 3.704261e-04   p_cons 2.047439e-01   p_joint 1.348120e-03

Joint ci ratio: 5.331336e-02	ci left: 1.313761e-03	ci right 1.385964e-03	k: 5398	n:4000000
Cons ci ratio: 3.862818e-03	ci left: 2.043482e-01	ci right 2.051393e-01	k: 818974	n:4000000
KS ci ratio: 1.017392e-01	ci left: 3.521217e-04	ci right 3.901077e-04	k: 1483	n:4000000
C2orf44   4000000 perm   6296 sec   (635 perm/sec)   p_kst 3.707500e-04   p_cons 2.047435e-01   p_joint 1.349500e-03

Joint ci ratio: 5.321976e-02	ci left: 1.315159e-03	ci right 1.387309e-03	k: 5417	n:4010000
Cons ci ratio: 3.857852e-03	ci left: 2.043610e-01	ci right 2.051512e-01	k: 821071	n:4010000
KS ci ratio: 1.016024e-01	ci left: 3.522157e-04	ci right 3.901577e-04	k: 1487	n:4010000
C2orf44   4010000 perm   6326 sec   (634 perm/sec)   p_kst 3.708229e-04   p_cons 2.047559e-01   p_joint 1.350873e-03

Joint ci ratio: 5.312665e-02	ci left: 1.316551e-03	ci right 1.388648e-03	k: 5436	n:4020000
Cons ci ratio: 3.853123e-03	ci left: 2.043554e-01	ci right 2.051445e-01	k: 823094	n:4020000
KS ci ratio: 1.013981e-01	ci left: 3.527942e-04	ci right 3.907176e-04	k: 1493	n:4020000
C2orf44   4020000 perm   6355 sec   (633 perm/sec)   p_kst 3.713930e-04   p_cons 2.047498e-01   p_joint 1.352239e-03

Joint ci ratio: 5.307789e-02	ci left: 1.315733e-03	ci right 1.387716e-03	k: 5446	n:4030000
Cons ci ratio: 3.848309e-03	ci left: 2.043585e-01	ci right 2.051467e-01	k: 825152	n:4030000
KS ci ratio: 1.013304e-01	ci left: 3.524025e-04	ci right 3.902569e-04	k: 1495	n:4030000
C2orf44   4030000 perm   6385 sec   (631 perm/sec)   p_kst 3.709677e-04   p_cons 2.047524e-01   p_joint 1.351365e-03

Joint ci ratio: 5.452018e-02	ci left: 1.243123e-03	ci right 1.313040e-03	k: 5162	n:4040000
Cons ci ratio: 3.843448e-03	ci left: 2.043670e-01	ci right 2.051542e-01	k: 827232	n:4040000
KS ci ratio: 1.010941e-01	ci left: 3.532190e-04	ci right 3.910674e-04	k: 1502	n:4040000
C2orf44   4040000 perm   6414 sec   (630 perm/sec)   p_kst 3.717822e-04   p_cons 2.047604e-01   p_joint 1.277723e-03

Joint ci ratio: 5.445693e-02	ci left: 1.242976e-03	ci right 1.312801e-03	k: 5174	n:4050000
Cons ci ratio: 3.838903e-03	ci left: 2.043503e-01	ci right 2.051365e-01	k: 829210	n:4050000
KS ci ratio: 1.009933e-01	ci left: 3.530689e-04	ci right 3.908613e-04	k: 1505	n:4050000
C2orf44   4050000 perm   6444 sec   (628 perm/sec)   p_kst 3.716049e-04   p_cons 2.047432e-01   p_joint 1.277531e-03

Joint ci ratio: 5.440441e-02	ci left: 1.242344e-03	ci right 1.312065e-03	k: 5184	n:4060000
Cons ci ratio: 3.834081e-03	ci left: 2.043586e-01	ci right 2.051438e-01	k: 831289	n:4060000
KS ci ratio: 1.008261e-01	ci left: 3.533997e-04	ci right 3.911612e-04	k: 1510	n:4060000
C2orf44   4060000 perm   6474 sec   (627 perm/sec)   p_kst 3.719212e-04   p_cons 2.047510e-01   p_joint 1.276847e-03

Joint ci ratio: 5.435205e-02	ci left: 1.241716e-03	ci right 1.311331e-03	k: 5194	n:4070000
Cons ci ratio: 3.829447e-03	ci left: 2.043523e-01	ci right 2.051366e-01	k: 833309	n:4070000
KS ci ratio: 1.007262e-01	ci left: 3.532500e-04	ci right 3.909557e-04	k: 1513	n:4070000
C2orf44   4070000 perm   6504 sec   (626 perm/sec)   p_kst 3.717445e-04   p_cons 2.047442e-01   p_joint 1.276167e-03

Joint ci ratio: 5.448355e-02	ci left: 1.232628e-03	ci right 1.301906e-03	k: 5169	n:4080000
Cons ci ratio: 3.824833e-03	ci left: 2.043458e-01	ci right 2.051291e-01	k: 835328	n:4080000
KS ci ratio: 1.006265e-01	ci left: 3.531009e-04	ci right 3.907513e-04	k: 1516	n:4080000
C2orf44   4080000 perm   6534 sec   (624 perm/sec)   p_kst 3.715686e-04   p_cons 2.047373e-01   p_joint 1.266912e-03

Joint ci ratio: 5.442569e-02	ci left: 1.232267e-03	ci right 1.301449e-03	k: 5180	n:4090000
Cons ci ratio: 3.819889e-03	ci left: 2.043689e-01	ci right 2.051513e-01	k: 837468	n:4090000
KS ci ratio: 1.004281e-01	ci left: 3.536677e-04	ci right 3.912998e-04	k: 1522	n:4090000
C2orf44   4090000 perm   6564 sec   (623 perm/sec)   p_kst 3.721271e-04   p_cons 2.047599e-01   p_joint 1.266504e-03

Joint ci ratio: 5.438900e-02	ci left: 1.230946e-03	ci right 1.300006e-03	k: 5187	n:4100000
Cons ci ratio: 3.815372e-03	ci left: 2.043571e-01	ci right 2.051385e-01	k: 839465	n:4100000
KS ci ratio: 1.003622e-01	ci left: 3.532807e-04	ci right 3.908455e-04	k: 1524	n:4100000
C2orf44   4100000 perm   6595 sec   (622 perm/sec)   p_kst 3.717073e-04   p_cons 2.047476e-01   p_joint 1.265122e-03

Joint ci ratio: 5.430530e-02	ci left: 1.231791e-03	ci right 1.300789e-03	k: 5203	n:4110000
Cons ci ratio: 3.810749e-03	ci left: 2.043557e-01	ci right 2.051362e-01	k: 841505	n:4110000
KS ci ratio: 1.003294e-01	ci left: 3.526583e-04	ci right 3.901439e-04	k: 1525	n:4110000
C2orf44   4110000 perm   6625 sec   (620 perm/sec)   p_kst 3.710462e-04   p_cons 2.047457e-01   p_joint 1.265937e-03

Joint ci ratio: 5.424280e-02	ci left: 1.231674e-03	ci right 1.300583e-03	k: 5215	n:4120000
Cons ci ratio: 3.806063e-03	ci left: 2.043612e-01	ci right 2.051407e-01	k: 843573	n:4120000
KS ci ratio: 1.002309e-01	ci left: 3.525122e-04	ci right 3.899434e-04	k: 1528	n:4120000
C2orf44   4120000 perm   6655 sec   (619 perm/sec)   p_kst 3.708738e-04   p_cons 2.047507e-01   p_joint 1.265777e-03

Joint ci ratio: 5.418571e-02	ci left: 1.231319e-03	ci right 1.300134e-03	k: 5226	n:4130000
Cons ci ratio: 3.801401e-03	ci left: 2.043661e-01	ci right 2.051447e-01	k: 845639	n:4130000
KS ci ratio: 1.001982e-01	ci left: 3.518947e-04	ci right 3.892474e-04	k: 1529	n:4130000
C2orf44   4130000 perm   6686 sec   (618 perm/sec)   p_kst 3.702179e-04   p_cons 2.047552e-01   p_joint 1.265375e-03

Joint ci ratio: 5.414950e-02	ci left: 1.230013e-03	ci right 1.298707e-03	k: 5233	n:4140000
Cons ci ratio: 3.796848e-03	ci left: 2.043631e-01	ci right 2.051407e-01	k: 847672	n:4140000
KS ci ratio: 1.001328e-01	ci left: 3.515157e-04	ci right 3.888024e-04	k: 1531	n:4140000
C2orf44   4140000 perm   6717 sec   (616 perm/sec)   p_kst 3.698068e-04   p_cons 2.047517e-01   p_joint 1.264010e-03

Joint ci ratio: 5.421184e-02	ci left: 1.224196e-03	ci right 1.292647e-03	k: 5221	n:4150000
Cons ci ratio: 3.792098e-03	ci left: 2.043784e-01	ci right 2.051551e-01	k: 849781	n:4150000
KS ci ratio: 1.000675e-01	ci left: 3.511386e-04	ci right 3.883595e-04	k: 1533	n:4150000
C2orf44   4150000 perm   6748 sec   (615 perm/sec)   p_kst 3.693976e-04   p_cons 2.047665e-01   p_joint 1.258072e-03

Joint ci ratio: 5.414967e-02	ci left: 1.224099e-03	ci right 1.292464e-03	k: 5233	n:4160000
Cons ci ratio: 3.787506e-03	ci left: 2.043815e-01	ci right 2.051573e-01	k: 851840	n:4160000
KS ci ratio: 9.983992e-02	ci left: 3.519351e-04	ci right 3.891507e-04	k: 1540	n:4160000
C2orf44   4160000 perm   6778 sec   (614 perm/sec)   p_kst 3.701923e-04   p_cons 2.047692e-01   p_joint 1.257933e-03

Outputting figure to mutsig2_images.part000000000024/C2orf44.4_2178_4160000_0.00037019_0.20477_0.0012579.png
                gene_name: C2orf44
               theta_stop: 0.100 
                    nperm: 4160000 
                     p_ks: 0.00037 
        ci_ks_bounds_left: 0.00035 
       ci_ks_bounds_right: 0.00039 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.0013 
     ci_joint_bounds_left: 0.0012 
    ci_joint_bounds_right: 0.0013 

Current progress: 30 percent done.
C2orf62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.722203e-02	ci left: 3.101662e-01	ci right 3.285391e-01	k: 3193	n:10000
Cons ci ratio: 1.532928e-02	ci left: 8.605959e-01	ci right 8.739894e-01	k: 8674	n:10000
KS ci ratio: 7.428590e-02	ci left: 2.096447e-01	ci right 2.259200e-01	k: 2177	n:10000
C2orf62   10000 perm   2 sec   (6585 perm/sec)   p_kst 2.177000e-01   p_cons 8.674000e-01   p_joint 3.193000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf62.4_1204_10000_0.2177_0.8674_0.3193.png
                gene_name: C2orf62
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 32 percent done.
C2orf77
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.804816e-02	ci left: 3.040161e-01	ci right 3.222929e-01	k: 3131	n:10000
Cons ci ratio: 4.498665e-02	ci left: 4.217637e-01	ci right 4.412762e-01	k: 4315	n:10000
KS ci ratio: 6.833256e-02	ci left: 2.390661e-01	ci right 2.560812e-01	k: 2475	n:10000
C2orf77   10000 perm   2 sec   (6489 perm/sec)   p_kst 2.475000e-01   p_cons 4.315000e-01   p_joint 3.131000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf77.4_1695_10000_0.2475_0.4315_0.3131.png
                gene_name: C2orf77
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 34 percent done.
C20orf94
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.485854e-02	ci left: 4.231596e-01	ci right 4.426795e-01	k: 4329	n:10000
Cons ci ratio: 7.534834e-02	ci left: 2.049112e-01	ci right 2.210563e-01	k: 2129	n:10000
KS ci ratio: 1.218113e-02	ci left: 9.062768e-01	ci right 9.174819e-01	k: 9120	n:10000
C20orf94   10000 perm   1 sec   (7225 perm/sec)   p_kst 9.120000e-01   p_cons 2.129000e-01   p_joint 4.329000e-01

Outputting figure to mutsig2_images.part000000000024/C20orf94.3_1255_10000_0.912_0.2129_0.4329.png
                gene_name: C20orf94
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 36 percent done.
C21orf29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.350497e-01	ci left: 7.242987e-02	ci right 8.301768e-02	k: 776	n:10000
Cons ci ratio: 1.706816e-01	ci left: 4.580994e-02	ci right 5.445453e-02	k: 500	n:10000
KS ci ratio: 9.364237e-02	ci left: 1.420738e-01	ci right 1.561313e-01	k: 1490	n:10000
C21orf29   10000 perm   1 sec   (6818 perm/sec)   p_kst 1.490000e-01   p_cons 5.000000e-02   p_joint 7.760000e-02

Joint ci ratio: 1.001870e-01	ci left: 6.752704e-02	ci right 7.469825e-02	k: 1421	n:20000
Cons ci ratio: 1.232388e-01	ci left: 4.517535e-02	ci right 5.115689e-02	k: 962	n:20000
KS ci ratio: 6.650479e-02	ci left: 1.430558e-01	ci right 1.529468e-01	k: 2959	n:20000
C21orf29   20000 perm   3 sec   (6049 perm/sec)   p_kst 1.479500e-01   p_cons 4.810000e-02   p_joint 7.105000e-02

Joint ci ratio: 9.262872e-02	ci left: 5.371809e-02	ci right 5.896824e-02	k: 1689	n:30000
Cons ci ratio: 1.023678e-01	ci left: 4.420966e-02	ci right 4.901197e-02	k: 1397	n:30000
KS ci ratio: 5.393814e-02	ci left: 1.456472e-01	ci right 1.537541e-01	k: 4490	n:30000
C21orf29   30000 perm   5 sec   (5755 perm/sec)   p_kst 1.496667e-01   p_cons 4.656667e-02   p_joint 5.630000e-02

Joint ci ratio: 8.803601e-02	ci left: 4.514222e-02	ci right 4.932383e-02	k: 1888	n:40000
Cons ci ratio: 8.752659e-02	ci left: 4.565623e-02	ci right 4.985973e-02	k: 1909	n:40000
KS ci ratio: 4.673946e-02	ci left: 1.460434e-01	ci right 1.530576e-01	k: 5981	n:40000
C21orf29   40000 perm   7 sec   (5562 perm/sec)   p_kst 1.495250e-01   p_cons 4.772500e-02   p_joint 4.720000e-02

Outputting figure to mutsig2_images.part000000000024/C21orf29.3_2058_40000_0.14952_0.047725_0.0472.png
                gene_name: C21orf29
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.049 

Current progress: 39 percent done.
C22orf40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.977475e-02	ci left: 2.314584e-01	ci right 2.482934e-01	k: 2398	n:10000
Cons ci ratio: 1.119136e-02	ci left: 9.193534e-01	ci right 9.297976e-01	k: 9247	n:10000
KS ci ratio: 1.507876e-01	ci left: 5.850872e-02	ci right 6.814759e-02	k: 632	n:10000
C22orf40   10000 perm   1 sec   (6677 perm/sec)   p_kst 6.320000e-02   p_cons 9.247000e-01   p_joint 2.398000e-01

Joint ci ratio: 6.368806e-02	ci left: 1.541543e-01	ci right 1.643450e-01	k: 3184	n:20000
Cons ci ratio: 7.897463e-03	ci left: 9.212114e-01	ci right 9.285645e-01	k: 18499	n:20000
KS ci ratio: 1.082782e-01	ci left: 5.816063e-02	ci right 6.486755e-02	k: 1229	n:20000
C22orf40   20000 perm   3 sec   (6273 perm/sec)   p_kst 6.145000e-02   p_cons 9.249500e-01   p_joint 1.592000e-01

Joint ci ratio: 5.431559e-02	ci left: 1.439004e-01	ci right 1.519679e-01	k: 4437	n:30000
Cons ci ratio: 6.412872e-03	ci left: 9.226742e-01	ci right 9.286430e-01	k: 27771	n:30000
KS ci ratio: 8.846056e-02	ci left: 5.870939e-02	ci right 6.417592e-02	k: 1842	n:30000
C22orf40   30000 perm   5 sec   (6130 perm/sec)   p_kst 6.140000e-02   p_cons 9.257000e-01   p_joint 1.479000e-01

Outputting figure to mutsig2_images.part000000000024/C22orf40.3_384_30000_0.0614_0.9257_0.1479.png
                gene_name: C22orf40
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 41 percent done.
C22orf43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.747163e-02	ci left: 6.612896e-01	ci right 6.798110e-01	k: 6706	n:10000
Cons ci ratio: 2.338610e-02	ci left: 7.287579e-01	ci right 7.461036e-01	k: 7375	n:10000
KS ci ratio: 3.856436e-02	ci left: 4.982503e-01	ci right 5.179450e-01	k: 5081	n:10000
C22orf43   10000 perm   1 sec   (7412 perm/sec)   p_kst 5.081000e-01   p_cons 7.375000e-01   p_joint 6.706000e-01

Outputting figure to mutsig2_images.part000000000024/C22orf43.3_738_10000_0.5081_0.7375_0.6706.png
                gene_name: C22orf43
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 43 percent done.
C2orf34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.887534e-02	ci left: 8.039987e-01	ci right 8.194193e-01	k: 8118	n:10000
Cons ci ratio: 4.437769e-02	ci left: 4.284445e-01	ci right 4.479915e-01	k: 4382	n:10000
KS ci ratio: 3.927257e-02	ci left: 4.891517e-01	ci right 5.088489e-01	k: 4990	n:10000
C2orf34   10000 perm   1 sec   (7415 perm/sec)   p_kst 4.990000e-01   p_cons 4.382000e-01   p_joint 8.118000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf34.3_1016_10000_0.499_0.4382_0.8118.png
                gene_name: C2orf34
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 45 percent done.
C2orf49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.155843e-02	ci left: 5.970460e-01	ci right 6.162918e-01	k: 6067	n:10000
Cons ci ratio: 1.148705e-01	ci left: 9.827781e-02	ci right 1.103538e-01	k: 1042	n:10000
KS ci ratio: 1.251182e-02	ci left: 9.017548e-01	ci right 9.132066e-01	k: 9076	n:10000
C2orf49   10000 perm   1 sec   (7435 perm/sec)   p_kst 9.076000e-01   p_cons 1.042000e-01   p_joint 6.067000e-01

Joint ci ratio: 2.041059e-02	ci left: 6.417365e-01	ci right 6.550203e-01	k: 12968	n:20000
Cons ci ratio: 8.062448e-02	ci left: 1.014224e-01	ci right 1.099926e-01	k: 2113	n:20000
KS ci ratio: 8.745194e-03	ci left: 9.054391e-01	ci right 9.134414e-01	k: 18190	n:20000
C2orf49   20000 perm   3 sec   (6598 perm/sec)   p_kst 9.095000e-01   p_cons 1.056500e-01   p_joint 6.484000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf49.3_715_20000_0.9095_0.10565_0.6484.png
                gene_name: C2orf49
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 48 percent done.
C2orf56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.169017e-02	ci left: 7.571705e-01	ci right 7.738746e-01	k: 7656	n:10000
KS ci ratio: 1.726249e-02	ci left: 8.302232e-01	ci right 8.447796e-01	k: 8376	n:10000
C2orf56   10000 perm   1 sec   (7337 perm/sec)   p_kst 8.376000e-01   p_cons 7.656000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000024/C2orf56.3_1366_10000_0.8376_0.7656_1.png
                gene_name: C2orf56
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
C2orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.380780e-02	ci left: 2.651762e-01	ci right 2.827556e-01	k: 2739	n:10000
Cons ci ratio: 2.395411e-02	ci left: 7.192638e-01	ci right 7.368032e-01	k: 7281	n:10000
KS ci ratio: 8.417885e-02	ci left: 1.706458e-01	ci right 1.857422e-01	k: 1781	n:10000
C2orf63   10000 perm   1 sec   (7040 perm/sec)   p_kst 1.781000e-01   p_cons 7.281000e-01   p_joint 2.739000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf63.3_1805_10000_0.1781_0.7281_0.2739.png
                gene_name: C2orf63
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 52 percent done.
C2orf67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.894111e-02	ci left: 1.899330e-01	ci right 2.056434e-01	k: 1977	n:10000
Cons ci ratio: 1.045720e-01	ci left: 1.167209e-01	ci right 1.296994e-01	k: 1231	n:10000
KS ci ratio: 4.440474e-02	ci left: 4.281453e-01	ci right 4.476909e-01	k: 4379	n:10000
C2orf67   10000 perm   2 sec   (6248 perm/sec)   p_kst 4.379000e-01   p_cons 1.231000e-01   p_joint 1.977000e-01

Joint ci ratio: 4.121389e-02	ci left: 3.049851e-01	ci right 3.178697e-01	k: 6228	n:20000
Cons ci ratio: 7.316803e-02	ci left: 1.208892e-01	ci right 1.301200e-01	k: 2509	n:20000
KS ci ratio: 3.152312e-02	ci left: 4.291122e-01	ci right 4.429064e-01	k: 8720	n:20000
C2orf67   20000 perm   4 sec   (5573 perm/sec)   p_kst 4.360000e-01   p_cons 1.254500e-01   p_joint 3.114000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf67.3_3020_20000_0.436_0.12545_0.3114.png
                gene_name: C2orf67
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 55 percent done.
C2orf69
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.584875e-02	ci left: 5.346773e-01	ci right 5.542968e-01	k: 5445	n:10000
Cons ci ratio: 6.787716e-02	ci left: 2.415369e-01	ci right 2.586089e-01	k: 2500	n:10000
KS ci ratio: 3.597900e-02	ci left: 5.328747e-01	ci right 5.525004e-01	k: 5427	n:10000
C2orf69   10000 perm   2 sec   (6375 perm/sec)   p_kst 5.427000e-01   p_cons 2.500000e-01   p_joint 5.445000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf69.3_1166_10000_0.5427_0.25_0.5445.png
                gene_name: C2orf69
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 57 percent done.
C20orf4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.576830e-01	ci left: 5.359424e-02	ci right 6.286520e-02	k: 581	n:10000
KS ci ratio: 9.792711e-02	ci left: 1.312962e-01	ci right 1.449153e-01	k: 1380	n:10000
C20orf4   10000 perm   1 sec   (8027 perm/sec)   p_kst 1.380000e-01   p_cons 5.810000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.111467e-01	ci left: 5.528683e-02	ci right 6.184224e-02	k: 1170	n:20000
KS ci ratio: 6.933349e-02	ci left: 1.330016e-01	ci right 1.426040e-01	k: 2755	n:20000
C20orf4   20000 perm   3 sec   (7018 perm/sec)   p_kst 1.377500e-01   p_cons 5.850000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 9.294970e-02	ci left: 5.335946e-02	ci right 5.859361e-02	k: 1678	n:30000
KS ci ratio: 5.640533e-02	ci left: 1.347414e-01	ci right 1.425953e-01	k: 4159	n:30000
C20orf4   30000 perm   5 sec   (6620 perm/sec)   p_kst 1.386333e-01   p_cons 5.593333e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000024/C20orf4.2_1167_30000_0.13863_0.055933_1.png
                gene_name: C20orf4
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.059 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
C20orf7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.835091e-02	ci left: 2.389673e-01	ci right 2.559801e-01	k: 2474	n:10000
Cons ci ratio: 7.992458e-02	ci left: 1.860928e-01	ci right 2.016859e-01	k: 1938	n:10000
KS ci ratio: 1.218871e-02	ci left: 9.061740e-01	ci right 9.173848e-01	k: 9119	n:10000
C20orf7   10000 perm   1 sec   (7629 perm/sec)   p_kst 9.119000e-01   p_cons 1.938000e-01   p_joint 2.474000e-01

Outputting figure to mutsig2_images.part000000000024/C20orf7.2_1102_10000_0.9119_0.1938_0.2474.png
                gene_name: C20orf7
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 61 percent done.
C20orf72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.160350e-02	ci left: 9.139945e-01	ci right 9.247597e-01	k: 9195	n:10000
KS ci ratio: 2.195589e-02	ci left: 7.527183e-01	ci right 7.695293e-01	k: 7612	n:10000
C20orf72   10000 perm   1 sec   (7568 perm/sec)   p_kst 7.612000e-01   p_cons 9.195000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000024/C20orf72.2_1051_10000_0.7612_0.9195_1.png
                gene_name: C20orf72
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
C20orf85
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.925084e-02	ci left: 6.328151e-01	ci right 6.517020e-01	k: 6423	n:10000
Cons ci ratio: 4.011404e-02	ci left: 4.785574e-01	ci right 4.982494e-01	k: 4884	n:10000
KS ci ratio: 7.566438e-02	ci left: 2.035310e-01	ci right 2.196374e-01	k: 2115	n:10000
C20orf85   10000 perm   1 sec   (7923 perm/sec)   p_kst 2.115000e-01   p_cons 4.884000e-01   p_joint 6.423000e-01

Outputting figure to mutsig2_images.part000000000024/C20orf85.2_430_10000_0.2115_0.4884_0.6423.png
                gene_name: C20orf85
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 66 percent done.
C20orf96
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.135109e-02	ci left: 9.172915e-01	ci right 9.278607e-01	k: 9227	n:10000
KS ci ratio: 3.237110e-02	ci left: 5.848004e-01	ci right 6.041445e-01	k: 5945	n:10000
C20orf96   10000 perm   1 sec   (7394 perm/sec)   p_kst 5.945000e-01   p_cons 9.227000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000024/C20orf96.2_1136_10000_0.5945_0.9227_1.png
                gene_name: C20orf96
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
C21orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.568038e-02	ci left: 8.551867e-01	ci right 8.688017e-01	k: 8621	n:10000
KS ci ratio: 2.958260e-02	ci left: 6.275869e-01	ci right 6.465332e-01	k: 6371	n:10000
C21orf63   10000 perm   1 sec   (7418 perm/sec)   p_kst 6.371000e-01   p_cons 8.621000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000024/C21orf63.2_1358_10000_0.6371_0.8621_1.png
                gene_name: C21orf63
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
C21orf70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.968030e-02	ci left: 7.907046e-01	ci right 8.065211e-01	k: 7987	n:10000
Cons ci ratio: 2.428697e-02	ci left: 7.137110e-01	ci right 7.313592e-01	k: 7226	n:10000
KS ci ratio: 5.482342e-02	ci left: 3.289257e-01	ci right 3.475686e-01	k: 3382	n:10000
C21orf70   10000 perm   1 sec   (7692 perm/sec)   p_kst 3.382000e-01   p_cons 7.226000e-01   p_joint 7.987000e-01

Outputting figure to mutsig2_images.part000000000024/C21orf70.2_717_10000_0.3382_0.7226_0.7987.png
                gene_name: C21orf70
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 73 percent done.
C21orf91
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.194744e-02	ci left: 4.562838e-01	ci right 4.759360e-01	k: 4661	n:10000
Cons ci ratio: 2.678422e-02	ci left: 6.724682e-01	ci right 6.908258e-01	k: 6817	n:10000
KS ci ratio: 9.194552e-02	ci left: 1.466828e-01	ci right 1.609195e-01	k: 1537	n:10000
C21orf91   10000 perm   1 sec   (7599 perm/sec)   p_kst 1.537000e-01   p_cons 6.817000e-01   p_joint 4.661000e-01

Outputting figure to mutsig2_images.part000000000024/C21orf91.2_910_10000_0.1537_0.6817_0.4661.png
                gene_name: C21orf91
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 75 percent done.
C22orf24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.806805e-02	ci left: 8.172052e-01	ci right 8.322052e-01	k: 8248	n:10000
KS ci ratio: 1.000608e-02	ci left: 9.340264e-01	ci right 9.435160e-01	k: 9389	n:10000
C22orf24   10000 perm   1 sec   (7834 perm/sec)   p_kst 9.389000e-01   p_cons 8.248000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000024/C22orf24.2_491_10000_0.9389_0.8248_1.png
                gene_name: C22orf24
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
C22orf25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.951078e-03	ci left: 9.660453e-01	ci right 9.728776e-01	k: 9696	n:10000
Cons ci ratio: 1.939234e-02	ci left: 7.954727e-01	ci right 8.111502e-01	k: 8034	n:10000
KS ci ratio: 1.099754e-02	ci left: 9.218292e-01	ci right 9.321204e-01	k: 9271	n:10000
C22orf25   10000 perm   1 sec   (7500 perm/sec)   p_kst 9.271000e-01   p_cons 8.034000e-01   p_joint 9.696000e-01

Outputting figure to mutsig2_images.part000000000024/C22orf25.2_863_10000_0.9271_0.8034_0.9696.png
                gene_name: C22orf25
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 80 percent done.
C22orf31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.063013e-01	ci left: 1.133015e-01	ci right 1.261210e-01	k: 1196	n:10000
Cons ci ratio: 1.472195e-01	ci left: 6.130724e-02	ci right 7.114729e-02	k: 661	n:10000
KS ci ratio: 2.794543e-02	ci left: 6.536391e-01	ci right 6.722659e-01	k: 6630	n:10000
C22orf31   10000 perm   1 sec   (7553 perm/sec)   p_kst 6.630000e-01   p_cons 6.610000e-02   p_joint 1.196000e-01

Joint ci ratio: 9.797943e-02	ci left: 7.045809e-02	ci right 7.776631e-02	k: 1481	n:20000
Cons ci ratio: 1.009921e-01	ci left: 6.650160e-02	ci right 7.362401e-02	k: 1400	n:20000
KS ci ratio: 1.972359e-02	ci left: 6.572547e-01	ci right 6.703977e-01	k: 13277	n:20000
C22orf31   20000 perm   3 sec   (6711 perm/sec)   p_kst 6.638500e-01   p_cons 7.000000e-02   p_joint 7.405000e-02

Joint ci ratio: 7.612932e-02	ci left: 7.810041e-02	ci right 8.431432e-02	k: 2435	n:30000
Cons ci ratio: 8.137254e-02	ci left: 6.887093e-02	ci right 7.474565e-02	k: 2153	n:30000
KS ci ratio: 1.613513e-02	ci left: 6.576189e-01	ci right 6.683495e-01	k: 19890	n:30000
C22orf31   30000 perm   5 sec   (6385 perm/sec)   p_kst 6.630000e-01   p_cons 7.176667e-02   p_joint 8.116667e-02

Outputting figure to mutsig2_images.part000000000024/C22orf31.2_885_30000_0.663_0.071767_0.081167.png
                gene_name: C22orf31
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.084 

Current progress: 82 percent done.
C22orf42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.522255e-02	ci left: 8.622295e-01	ci right 8.755548e-01	k: 8690	n:10000
Cons ci ratio: 3.657006e-02	ci left: 5.247648e-01	ci right 5.444151e-01	k: 5346	n:10000
KS ci ratio: 3.239796e-02	ci left: 5.843990e-01	ci right 6.037461e-01	k: 5941	n:10000
C22orf42   10000 perm   1 sec   (8032 perm/sec)   p_kst 5.941000e-01   p_cons 5.346000e-01   p_joint 8.690000e-01

Outputting figure to mutsig2_images.part000000000024/C22orf42.2_792_10000_0.5941_0.5346_0.869.png
                gene_name: C22orf42
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 84 percent done.
C2orf15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.246634e-02	ci left: 1.766450e-01	ci right 1.919393e-01	k: 1842	n:10000
Cons ci ratio: 9.939328e-02	ci left: 1.278700e-01	ci right 1.413437e-01	k: 1345	n:10000
KS ci ratio: 4.041214e-02	ci left: 4.748604e-01	ci right 4.945485e-01	k: 4847	n:10000
C2orf15   10000 perm   1 sec   (8409 perm/sec)   p_kst 4.847000e-01   p_cons 1.345000e-01   p_joint 1.842000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf15.2_386_10000_0.4847_0.1345_0.1842.png
                gene_name: C2orf15
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 86 percent done.
C2orf24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.191388e-02	ci left: 9.098768e-01	ci right 9.208798e-01	k: 9155	n:10000
KS ci ratio: 6.870133e-02	ci left: 2.370897e-01	ci right 2.540587e-01	k: 2455	n:10000
C2orf24   10000 perm   1 sec   (7323 perm/sec)   p_kst 2.455000e-01   p_cons 9.155000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000024/C2orf24.2_1265_10000_0.2455_0.9155_1.png
                gene_name: C2orf24
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
C2orf53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.296954e-01	ci left: 7.824692e-02	ci right 8.919702e-02	k: 836	n:10000
Cons ci ratio: 1.940616e-01	ci left: 3.538572e-02	ci right 4.308567e-02	k: 391	n:10000
KS ci ratio: 7.291787e-02	ci left: 2.159584e-01	ci right 2.324025e-01	k: 2241	n:10000
C2orf53   10000 perm   1 sec   (7623 perm/sec)   p_kst 2.241000e-01   p_cons 3.910000e-02   p_joint 8.360000e-02

Joint ci ratio: 7.729207e-02	ci left: 1.095285e-01	ci right 1.183841e-01	k: 2278	n:20000
Cons ci ratio: 1.568044e-01	ci left: 2.791979e-02	ci right 3.271805e-02	k: 605	n:20000
KS ci ratio: 5.045999e-02	ci left: 2.259165e-01	ci right 2.376616e-01	k: 4635	n:20000
C2orf53   20000 perm   3 sec   (6720 perm/sec)   p_kst 2.317500e-01   p_cons 3.025000e-02   p_joint 1.139000e-01

Joint ci ratio: 4.130494e-02	ci left: 2.261079e-01	ci right 2.356776e-01	k: 6926	n:30000
Cons ci ratio: 1.294329e-01	ci left: 2.774345e-02	ci right 3.161501e-02	k: 889	n:30000
KS ci ratio: 4.130106e-02	ci left: 2.261410e-01	ci right 2.357112e-01	k: 6927	n:30000
C2orf53   30000 perm   5 sec   (6357 perm/sec)   p_kst 2.309000e-01   p_cons 2.963333e-02   p_joint 2.308667e-01

Joint ci ratio: 3.800376e-02	ci left: 2.060916e-01	ci right 2.141005e-01	k: 8403	n:40000
Cons ci ratio: 1.118339e-01	ci left: 2.813107e-02	ci right 3.148765e-02	k: 1191	n:40000
KS ci ratio: 3.571337e-02	ci left: 2.273239e-01	ci right 2.356151e-01	k: 9258	n:40000
C2orf53   40000 perm   7 sec   (6115 perm/sec)   p_kst 2.314500e-01   p_cons 2.977500e-02   p_joint 2.100750e-01

Joint ci ratio: 3.800541e-02	ci left: 1.720953e-01	ci right 1.787825e-01	k: 8771	n:50000
Cons ci ratio: 8.839855e-02	ci left: 3.616482e-02	ci right 3.952911e-02	k: 1891	n:50000
KS ci ratio: 3.195157e-02	ci left: 2.276694e-01	ci right 2.350818e-01	k: 11568	n:50000
C2orf53   50000 perm   8 sec   (5916 perm/sec)   p_kst 2.313600e-01   p_cons 3.782000e-02   p_joint 1.754200e-01

Outputting figure to mutsig2_images.part000000000024/C2orf53.2_1243_50000_0.23136_0.03782_0.17542.png
                gene_name: C2orf53
               theta_stop: 0.088 
                    nperm: 50000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 91 percent done.
C2orf55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.926994e-02	ci left: 6.325134e-01	ci right 6.514038e-01	k: 6420	n:10000
Cons ci ratio: 1.018556e-01	ci left: 1.223911e-01	ci right 1.356258e-01	k: 1289	n:10000
KS ci ratio: 9.839580e-03	ci left: 9.359947e-01	ci right 9.453466e-01	k: 9408	n:10000
C2orf55   10000 perm   2 sec   (6567 perm/sec)   p_kst 9.408000e-01   p_cons 1.289000e-01   p_joint 6.420000e-01

Joint ci ratio: 3.576946e-02	ci left: 3.684335e-01	ci right 3.819028e-01	k: 7503	n:20000
Cons ci ratio: 7.181649e-02	ci left: 1.249743e-01	ci right 1.343336e-01	k: 2592	n:20000
KS ci ratio: 6.791708e-03	ci left: 9.401075e-01	ci right 9.465629e-01	k: 18868	n:20000
C2orf55   20000 perm   3 sec   (5879 perm/sec)   p_kst 9.434000e-01   p_cons 1.296000e-01   p_joint 3.751500e-01

Outputting figure to mutsig2_images.part000000000024/C2orf55.2_2925_20000_0.9434_0.1296_0.37515.png
                gene_name: C2orf55
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 93 percent done.
C2orf78
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.861839e-02	ci left: 4.975503e-01	ci right 5.172454e-01	k: 5074	n:10000
Cons ci ratio: 3.729637e-02	ci left: 5.149562e-01	ci right 5.346293e-01	k: 5248	n:10000
KS ci ratio: 7.660662e-02	ci left: 1.994895e-01	ci right 2.154812e-01	k: 2074	n:10000
C2orf78   10000 perm   2 sec   (6498 perm/sec)   p_kst 2.074000e-01   p_cons 5.248000e-01   p_joint 5.074000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf78.2_2781_10000_0.2074_0.5248_0.5074.png
                gene_name: C2orf78
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 95 percent done.
C2orf79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.509198e-01	ci left: 5.814929e-03	ci right 9.281233e-03	k: 74	n:10000
Cons ci ratio: 2.689486e-01	ci left: 1.799971e-02	ci right 2.368423e-02	k: 207	n:10000
KS ci ratio: 2.478600e-01	ci left: 2.137124e-02	ci right 2.751008e-02	k: 243	n:10000
C2orf79   10000 perm   1 sec   (7718 perm/sec)   p_kst 2.430000e-02   p_cons 2.070000e-02   p_joint 7.400000e-03

Joint ci ratio: 1.722173e-01	ci left: 2.307208e-02	ci right 2.746742e-02	k: 504	n:20000
Cons ci ratio: 1.892528e-01	ci left: 1.901003e-02	ci right 2.303092e-02	k: 419	n:20000
KS ci ratio: 1.771369e-01	ci left: 2.177980e-02	ci right 2.606015e-02	k: 477	n:20000
C2orf79   20000 perm   3 sec   (7072 perm/sec)   p_kst 2.385000e-02   p_cons 2.095000e-02   p_joint 2.520000e-02

Joint ci ratio: 1.015702e-01	ci left: 4.489262e-02	ci right 4.972887e-02	k: 1418	n:30000
Cons ci ratio: 1.528002e-01	ci left: 1.982433e-02	ci right 2.313591e-02	k: 643	n:30000
KS ci ratio: 1.453614e-01	ci left: 2.194399e-02	ci right 2.541576e-02	k: 709	n:30000
C2orf79   30000 perm   4 sec   (6729 perm/sec)   p_kst 2.363333e-02   p_cons 2.143333e-02   p_joint 4.726667e-02

Joint ci ratio: 8.620758e-02	ci left: 4.702727e-02	ci right 5.128849e-02	k: 1965	n:40000
Cons ci ratio: 1.304528e-01	ci left: 2.063321e-02	ci right 2.353675e-02	k: 882	n:40000
KS ci ratio: 1.245902e-01	ci left: 2.264346e-02	ci right 2.567616e-02	k: 965	n:40000
C2orf79   40000 perm   6 sec   (6446 perm/sec)   p_kst 2.412500e-02   p_cons 2.205000e-02   p_joint 4.912500e-02

Joint ci ratio: 7.744690e-02	ci left: 4.684925e-02	ci right 5.064336e-02	k: 2436	n:50000
Cons ci ratio: 1.183781e-01	ci left: 2.018823e-02	ci right 2.274774e-02	k: 1072	n:50000
KS ci ratio: 1.112720e-01	ci left: 2.287073e-02	ci right 2.558490e-02	k: 1210	n:50000
C2orf79   50000 perm   8 sec   (6287 perm/sec)   p_kst 2.420000e-02   p_cons 2.144000e-02   p_joint 4.872000e-02

Joint ci ratio: 7.569635e-02	ci left: 4.116153e-02	ci right 4.441621e-02	k: 2566	n:60000
Cons ci ratio: 1.141268e-01	ci left: 1.818174e-02	ci right 2.039844e-02	k: 1156	n:60000
KS ci ratio: 1.030100e-01	ci left: 2.235138e-02	ci right 2.479500e-02	k: 1413	n:60000
C2orf79   60000 perm   10 sec   (6157 perm/sec)   p_kst 2.355000e-02   p_cons 1.926667e-02   p_joint 4.276667e-02

Joint ci ratio: 7.025095e-02	ci left: 4.108769e-02	ci right 4.409323e-02	k: 2980	n:70000
Cons ci ratio: 1.062173e-01	ci left: 1.807102e-02	ci right 2.011197e-02	k: 1335	n:70000
KS ci ratio: 9.541817e-02	ci left: 2.241835e-02	ci right 2.467853e-02	k: 1647	n:70000
C2orf79   70000 perm   12 sec   (6030 perm/sec)   p_kst 2.352857e-02   p_cons 1.907143e-02   p_joint 4.257143e-02

Joint ci ratio: 6.201041e-02	ci left: 4.609781e-02	ci right 4.906011e-02	k: 3805	n:80000
Cons ci ratio: 9.975289e-02	ci left: 1.799201e-02	ci right 1.989311e-02	k: 1514	n:80000
KS ci ratio: 8.936326e-02	ci left: 2.243688e-02	ci right 2.454787e-02	k: 1878	n:80000
C2orf79   80000 perm   14 sec   (5910 perm/sec)   p_kst 2.347500e-02   p_cons 1.892500e-02   p_joint 4.756250e-02

Outputting figure to mutsig2_images.part000000000024/C2orf79.2_431_80000_0.023475_0.018925_0.047563.png
                gene_name: C2orf79
               theta_stop: 0.100 
                    nperm: 80000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.049 

Current progress: 98 percent done.
C2orf80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.159350e-02	ci left: 7.587897e-01	ci right 7.754544e-01	k: 7672	n:10000
Cons ci ratio: 4.818124e-02	ci left: 3.885863e-01	ci right 4.078731e-01	k: 3982	n:10000
KS ci ratio: 3.382151e-02	ci left: 5.634356e-01	ci right 5.829217e-01	k: 5732	n:10000
C2orf80   10000 perm   1 sec   (7960 perm/sec)   p_kst 5.732000e-01   p_cons 3.982000e-01   p_joint 7.672000e-01

Outputting figure to mutsig2_images.part000000000024/C2orf80.2_614_10000_0.5732_0.3982_0.7672.png
                gene_name: C2orf80
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000024
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 24 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9893859: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000025> was used as the working directory.
Started at Fri Oct  5 23:58:13 2012
Results reported at Sat Oct  6 00:04:30 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000025.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000025.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 25  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000025.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    351.20 sec.
    Max Memory :      3638 MB
    Max Swap   :      5983 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
25
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 25
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 25: processing genes 2165 - 2254
Calculating significance of each gene.
Using projection method.
2165	C2orf83	1
2166	C2orf84	6.329222e-01
2167	C2orf85	9.746724e-01
2168	C2orf86	1.292629e-01
2169	C2orf88	3.216057e-01
2170	C2orf89	9.305337e-01
2171	C3	2.074616e-01
2172	C3AR1	4.256297e-01
2173	C3orf1	6.620052e-01
2174	C3orf10	1
2175	C3orf14	2.434402e-01
2176	C3orf15	6.616712e-01
2177	C3orf17	1
2178	C3orf18	1
2179	C3orf19	4.143790e-01
2180	C3orf20	4.926800e-03
2181	C3orf21	1
2182	C3orf22	3.664020e-01
2183	C3orf23	3.001055e-01
2184	C3orf24	1.360042e-01
2185	C3orf26	2.871350e-02
2186	C3orf27	1.030946e-01
2187	C3orf30	1.331916e-02
2188	C3orf31	6.351930e-01
2189	C3orf32	4.193361e-01
2190	C3orf33	3.302221e-01
2191	C3orf34	2.507838e-01
2192	C3orf35	4.997033e-01
2193	C3orf36	1.205309e-01
2194	C3orf37	1
2195	C3orf38	3.157688e-01
2196	C3orf39	7.057860e-02
2197	C3orf43	2.989023e-01
2198	C3orf45	4.083605e-01
2199	C3orf52	1
2200	C3orf54	4.758414e-01
2201	C3orf55	1
2202	C3orf57	1
2203	C3orf58	5.404669e-01
2204	C3orf59	6.960125e-01
2205	C3orf62	1
2206	C3orf63	5.459758e-01
2207	C3orf64	1.378221e-01
2208	C3orf67	6.808328e-03
2209	C3orf70	7.272540e-01
2210	C3orf71	1
2211	C3orf72	4.922061e-01
2212	C3orf75	5.491119e-01
2213	C3orf79	3.384542e-01
2214	C4BPA	5.565991e-03
2215	C4BPB	1
2216	C4orf14	8.951339e-01
2217	C4orf17	8.169717e-01
2218	C4orf19	6.941652e-01
2219	C4orf21	7.000964e-01
2220	C4orf22	1.628504e-01
2221	C4orf23	1
2222	C4orf26	2.945623e-02
2223	C4orf27	2.467350e-01
2224	C4orf29	6.619495e-01
2225	C4orf3	1
2226	C4orf31	4.037442e-01
2227	C4orf32	1
2228	C4orf33	1
2229	C4orf34	1
2230	C4orf35	3.164325e-01
2231	C4orf36	1
2232	C4orf37	1.748835e-03
2233	C4orf39	4.613321e-01
2234	C4orf40	3.219012e-01
2235	C4orf41	6.622735e-02
2236	C4orf43	2.619589e-01
2237	C4orf44	1
2238	C4orf45	1.634044e-01
2239	C4orf46	1
2240	C4orf49	1
2241	C4orf50	1
2242	C4orf51	1
2243	C4orf6	1.681064e-01
2244	C4orf7	2.754306e-01
2245	C5	9.756415e-02
2246	C5AR1	3.102977e-01
2247	C5orf13	2.118337e-01
2248	C5orf15	5.148621e-01
2249	C5orf20	1
2250	C5orf22	3.552319e-01
2251	C5orf23	2.910940e-01
2252	C5orf24	1
2253	C5orf25	5.476297e-01
2254	C5orf28	3.630553e-01
Done

Running MutSig 2:
Scatter job 25: processing genes 2165 - 2254
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.974422e-02	ci left: 3.734575e-01	ci right 3.926107e-01	k: 3830	n:10000
Cons ci ratio: 7.448267e-02	ci left: 2.087570e-01	ci right 2.250082e-01	k: 2168	n:10000
KS ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
C5   10000 perm   2 sec   (4298 perm/sec)   p_kst 4.564000e-01   p_cons 2.168000e-01   p_joint 3.830000e-01

Outputting figure to mutsig2_images.part000000000025/C5.13_5195_10000_0.4564_0.2168_0.383.png
                gene_name: C5
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 2 percent done.
C3orf20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.353171e-02	ci left: 4.379204e-01	ci right 4.575101e-01	k: 4477	n:10000
Cons ci ratio: 9.298371e-02	ci left: 1.438386e-01	ci right 1.579654e-01	k: 1508	n:10000
KS ci ratio: 1.111895e-02	ci left: 9.202817e-01	ci right 9.306688e-01	k: 9256	n:10000
C3orf20   10000 perm   2 sec   (5892 perm/sec)   p_kst 9.256000e-01   p_cons 1.508000e-01   p_joint 4.477000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf20.12_2775_10000_0.9256_0.1508_0.4477.png
                gene_name: C3orf20
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 5 percent done.
C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.664198e-03	ci left: 9.972795e-01	ci right 9.990094e-01	k: 9983	n:10000
KS ci ratio: 1.868988e-02	ci left: 8.070450e-01	ci right 8.223712e-01	k: 8148	n:10000
C3   10000 perm   2 sec   (4572 perm/sec)   p_kst 8.148000e-01   p_cons 9.983000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C3.11_5156_10000_0.8148_0.9983_1.png
                gene_name: C3
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
C3orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.966875e-01	ci left: 3.443296e-02	ci right 4.203907e-02	k: 381	n:10000
Cons ci ratio: 1.723172e-01	ci left: 4.494682e-02	ci right 5.351821e-02	k: 491	n:10000
KS ci ratio: 1.405162e-01	ci left: 6.710566e-02	ci right 7.734523e-02	k: 721	n:10000
C3orf63   10000 perm   2 sec   (4546 perm/sec)   p_kst 7.210000e-02   p_cons 4.910000e-02   p_joint 3.810000e-02

Joint ci ratio: 1.415071e-01	ci left: 3.432986e-02	ci right 3.960586e-02	k: 738	n:20000
Cons ci ratio: 1.229707e-01	ci left: 4.536948e-02	ci right 5.136270e-02	k: 966	n:20000
KS ci ratio: 9.906657e-02	ci left: 6.899234e-02	ci right 7.623250e-02	k: 1451	n:20000
C3orf63   20000 perm   5 sec   (4232 perm/sec)   p_kst 7.255000e-02   p_cons 4.830000e-02   p_joint 3.690000e-02

Joint ci ratio: 1.095481e-01	ci left: 3.868669e-02	ci right 4.320276e-02	k: 1227	n:30000
Cons ci ratio: 1.020239e-01	ci left: 4.450233e-02	ci right 4.931923e-02	k: 1406	n:30000
KS ci ratio: 8.114953e-02	ci left: 6.923069e-02	ci right 7.511915e-02	k: 2164	n:30000
C3orf63   30000 perm   7 sec   (4080 perm/sec)   p_kst 7.213333e-02   p_cons 4.686667e-02   p_joint 4.090000e-02

Joint ci ratio: 1.120278e-01	ci left: 2.803379e-02	ci right 3.138495e-02	k: 1187	n:40000
Cons ci ratio: 8.260262e-02	ci left: 5.109414e-02	ci right 5.552100e-02	k: 2131	n:40000
KS ci ratio: 7.045772e-02	ci left: 6.928876e-02	ci right 7.437361e-02	k: 2872	n:40000
C3orf63   40000 perm   10 sec   (4006 perm/sec)   p_kst 7.180000e-02   p_cons 5.327500e-02   p_joint 2.967500e-02

Joint ci ratio: 9.975184e-02	ci left: 2.846355e-02	ci right 3.147135e-02	k: 1497	n:50000
Cons ci ratio: 7.395551e-02	ci left: 5.122914e-02	ci right 5.518294e-02	k: 2659	n:50000
KS ci ratio: 6.077199e-02	ci left: 7.448067e-02	ci right 7.916861e-02	k: 3840	n:50000
C3orf63   50000 perm   13 sec   (3941 perm/sec)   p_kst 7.680000e-02   p_cons 5.318000e-02   p_joint 2.994000e-02

Outputting figure to mutsig2_images.part000000000025/C3orf63.9_5169_50000_0.0768_0.05318_0.02994.png
                gene_name: C3orf63
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.031 

Current progress: 10 percent done.
C2orf86
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.002121e-01	ci left: 1.260106e-01	ci right 1.394041e-01	k: 1326	n:10000
Cons ci ratio: 1.883815e-01	ci left: 3.757958e-02	ci right 4.549032e-02	k: 414	n:10000
KS ci ratio: 7.825135e-02	ci left: 1.926909e-01	ci right 2.084839e-01	k: 2005	n:10000
C2orf86   10000 perm   2 sec   (5600 perm/sec)   p_kst 2.005000e-01   p_cons 4.140000e-02   p_joint 1.326000e-01

Joint ci ratio: 1.052128e-01	ci left: 6.147550e-02	ci right 6.835165e-02	k: 1297	n:20000
Cons ci ratio: 1.455428e-01	ci left: 3.244754e-02	ci right 3.758880e-02	k: 699	n:20000
KS ci ratio: 5.617476e-02	ci left: 1.902706e-01	ci right 2.013180e-01	k: 3915	n:20000
C2orf86   20000 perm   4 sec   (5085 perm/sec)   p_kst 1.957500e-01   p_cons 3.495000e-02   p_joint 6.485000e-02

Joint ci ratio: 6.629856e-02	ci left: 1.008959e-01	ci right 1.078476e-01	k: 3130	n:30000
Cons ci ratio: 1.178510e-01	ci left: 3.346692e-02	ci right 3.769031e-02	k: 1066	n:30000
KS ci ratio: 4.649760e-02	ci left: 1.870608e-01	ci right 1.959990e-01	k: 5745	n:30000
C2orf86   30000 perm   6 sec   (4935 perm/sec)   p_kst 1.915000e-01   p_cons 3.553333e-02   p_joint 1.043333e-01

Joint ci ratio: 6.409011e-02	ci left: 8.277739e-02	ci right 8.828295e-02	k: 3420	n:40000
Cons ci ratio: 1.013504e-01	ci left: 3.422003e-02	ci right 3.789772e-02	k: 1441	n:40000
KS ci ratio: 4.018171e-02	ci left: 1.883237e-01	ci right 1.960710e-01	k: 7687	n:40000
C2orf86   40000 perm   8 sec   (4796 perm/sec)   p_kst 1.921750e-01   p_cons 3.602500e-02   p_joint 8.550000e-02

Joint ci ratio: 5.424042e-02	ci left: 9.200883e-02	ci right 9.715835e-02	k: 4728	n:50000
Cons ci ratio: 9.035222e-02	ci left: 3.463843e-02	ci right 3.793569e-02	k: 1813	n:50000
KS ci ratio: 3.592116e-02	ci left: 1.888932e-01	ci right 1.958225e-01	k: 9617	n:50000
C2orf86   50000 perm   11 sec   (4700 perm/sec)   p_kst 1.923400e-01   p_cons 3.626000e-02   p_joint 9.456000e-02

Outputting figure to mutsig2_images.part000000000025/C2orf86.8_2339_50000_0.19234_0.03626_0.09456.png
                gene_name: C2orf86
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.097 

Current progress: 12 percent done.
C3orf39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.092244e-01	ci left: 1.078341e-01	ci right 1.203917e-01	k: 1140	n:10000
Cons ci ratio: 3.068591e-02	ci left: 6.104028e-01	ci right 6.295273e-01	k: 6200	n:10000
KS ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
C3orf39   10000 perm   2 sec   (6156 perm/sec)   p_kst 2.820000e-02   p_cons 6.200000e-01   p_joint 1.140000e-01

Joint ci ratio: 9.516495e-02	ci left: 7.446665e-02	ci right 8.195653e-02	k: 1563	n:20000
Cons ci ratio: 2.202288e-02	ci left: 6.062087e-01	ci right 6.197584e-01	k: 12260	n:20000
KS ci ratio: 1.593999e-01	ci left: 2.700636e-02	ci right 3.173179e-02	k: 586	n:20000
C3orf39   20000 perm   4 sec   (5587 perm/sec)   p_kst 2.930000e-02   p_cons 6.130000e-01   p_joint 7.815000e-02

Joint ci ratio: 9.348168e-02	ci left: 5.277268e-02	ci right 5.798051e-02	k: 1660	n:30000
Cons ci ratio: 1.758385e-02	ci left: 6.180558e-01	ci right 6.290536e-01	k: 18707	n:30000
KS ci ratio: 1.318179e-01	ci left: 2.674297e-02	ci right 3.054904e-02	k: 858	n:30000
C3orf39   30000 perm   6 sec   (5357 perm/sec)   p_kst 2.860000e-02   p_cons 6.235667e-01   p_joint 5.533333e-02

Joint ci ratio: 7.674811e-02	ci left: 5.887043e-02	ci right 6.359351e-02	k: 2448	n:40000
Cons ci ratio: 1.521575e-02	ci left: 6.191817e-01	ci right 6.287003e-01	k: 24958	n:40000
KS ci ratio: 1.135640e-01	ci left: 2.728005e-02	ci right 3.058881e-02	k: 1156	n:40000
C3orf39   40000 perm   8 sec   (5207 perm/sec)   p_kst 2.890000e-02   p_cons 6.239500e-01   p_joint 6.120000e-02

Joint ci ratio: 7.394083e-02	ci left: 5.124879e-02	ci right 5.520329e-02	k: 2660	n:50000
Cons ci ratio: 1.357496e-02	ci left: 6.208797e-01	ci right 6.293858e-01	k: 31257	n:50000
KS ci ratio: 9.930849e-02	ci left: 2.871727e-02	ci right 3.173760e-02	k: 1510	n:50000
C3orf39   50000 perm   10 sec   (5071 perm/sec)   p_kst 3.020000e-02   p_cons 6.251400e-01   p_joint 5.320000e-02

Outputting figure to mutsig2_images.part000000000025/C3orf39.8_1747_50000_0.0302_0.62514_0.0532.png
                gene_name: C3orf39
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.055 

Current progress: 15 percent done.
C3orf67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.326693e-02	ci left: 2.685418e-01	ci right 2.861881e-01	k: 2773	n:10000
Cons ci ratio: 3.446865e-02	ci left: 5.541131e-01	ci right 5.736497e-01	k: 5639	n:10000
KS ci ratio: 8.290783e-02	ci left: 1.750712e-01	ci right 1.903141e-01	k: 1826	n:10000
C3orf67   10000 perm   2 sec   (5681 perm/sec)   p_kst 1.826000e-01   p_cons 5.639000e-01   p_joint 2.773000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf67.8_1740_10000_0.1826_0.5639_0.2773.png
                gene_name: C3orf67
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 17 percent done.
C4orf37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.554831e-02	ci left: 8.572275e-01	ci right 8.707597e-01	k: 8641	n:10000
KS ci ratio: 8.943382e-03	ci left: 9.461696e-01	ci right 9.547655e-01	k: 9506	n:10000
C4orf37   10000 perm   2 sec   (6169 perm/sec)   p_kst 9.506000e-01   p_cons 8.641000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C4orf37.8_1424_10000_0.9506_0.8641_1.png
                gene_name: C4orf37
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
C4orf41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.533871e-02	ci left: 5.417887e-01	ci right 5.613813e-01	k: 5516	n:10000
Cons ci ratio: 4.986017e-02	ci left: 3.723630e-01	ci right 3.915058e-01	k: 3819	n:10000
KS ci ratio: 4.822146e-02	ci left: 3.881880e-01	ci right 4.074716e-01	k: 3978	n:10000
C4orf41   10000 perm   2 sec   (5626 perm/sec)   p_kst 3.978000e-01   p_cons 3.819000e-01   p_joint 5.516000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf41.8_3518_10000_0.3978_0.3819_0.5516.png
                gene_name: C4orf41
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 22 percent done.
C4BPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.107132e-02	ci left: 6.044766e-01	ci right 6.236569e-01	k: 6141	n:10000
Cons ci ratio: 5.679055e-02	ci left: 3.134405e-01	ci right 3.318629e-01	k: 3226	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
C4BPA   10000 perm   2 sec   (6028 perm/sec)   p_kst 1   p_cons 3.226000e-01   p_joint 6.141000e-01

Outputting figure to mutsig2_images.part000000000025/C4BPA.7_1838_10000_1_0.3226_0.6141.png
                gene_name: C4BPA
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 24 percent done.
C3orf30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.084215e-01	ci left: 1.092981e-01	ci right 1.219268e-01	k: 1155	n:10000
Cons ci ratio: 2.624268e-02	ci left: 6.813348e-01	ci right 6.995541e-01	k: 6905	n:10000
KS ci ratio: 1.603324e-01	ci left: 5.186203e-02	ci right 6.099852e-02	k: 563	n:10000
C3orf30   10000 perm   2 sec   (6163 perm/sec)   p_kst 5.630000e-02   p_cons 6.905000e-01   p_joint 1.155000e-01

Joint ci ratio: 8.656147e-02	ci left: 8.896023e-02	ci right 9.705854e-02	k: 1859	n:20000
Cons ci ratio: 1.841815e-02	ci left: 6.872588e-01	ci right 7.000849e-01	k: 13874	n:20000
KS ci ratio: 1.150043e-01	ci left: 5.173437e-02	ci right 5.809581e-02	k: 1097	n:20000
C3orf30   20000 perm   4 sec   (5599 perm/sec)   p_kst 5.485000e-02   p_cons 6.937000e-01   p_joint 9.295000e-02

Joint ci ratio: 5.879031e-02	ci left: 1.252592e-01	ci right 1.328794e-01	k: 3871	n:30000
Cons ci ratio: 1.506800e-02	ci left: 6.876114e-01	ci right 6.980845e-01	k: 20786	n:30000
KS ci ratio: 8.984505e-02	ci left: 5.697974e-02	ci right 6.237259e-02	k: 1789	n:30000
C3orf30   30000 perm   6 sec   (5380 perm/sec)   p_kst 5.963333e-02   p_cons 6.928667e-01   p_joint 1.290333e-01

Outputting figure to mutsig2_images.part000000000025/C3orf30.6_1623_30000_0.059633_0.69287_0.12903.png
                gene_name: C3orf30
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 27 percent done.
C4orf21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.945788e-01	ci left: 3.519511e-02	ci right 4.287640e-02	k: 389	n:10000
Cons ci ratio: 1.637241e-02	ci left: 8.443782e-01	ci right 8.584164e-01	k: 8515	n:10000
KS ci ratio: 3.134257e-01	ci left: 1.298624e-02	ci right 1.790194e-02	k: 153	n:10000
C4orf21   10000 perm   2 sec   (4525 perm/sec)   p_kst 1.530000e-02   p_cons 8.515000e-01   p_joint 3.890000e-02

Joint ci ratio: 1.011086e-01	ci left: 6.635513e-02	ci right 7.347052e-02	k: 1397	n:20000
Cons ci ratio: 1.123093e-02	ci left: 8.540996e-01	ci right 8.637958e-01	k: 17180	n:20000
KS ci ratio: 2.117242e-01	ci left: 1.506432e-02	ci right 1.867810e-02	k: 336	n:20000
C4orf21   20000 perm   5 sec   (4146 perm/sec)   p_kst 1.680000e-02   p_cons 8.590000e-01   p_joint 6.985000e-02

Joint ci ratio: 8.725616e-02	ci left: 6.027642e-02	ci right 6.580858e-02	k: 1890	n:30000
Cons ci ratio: 9.466749e-03	ci left: 8.470210e-01	ci right 8.551109e-01	k: 25533	n:30000
KS ci ratio: 1.719246e-01	ci left: 1.556744e-02	ci right 1.852716e-02	k: 510	n:30000
C4orf21   30000 perm   7 sec   (4006 perm/sec)   p_kst 1.700000e-02   p_cons 8.511000e-01   p_joint 6.300000e-02

Joint ci ratio: 8.574985e-02	ci left: 4.751704e-02	ci right 5.179864e-02	k: 1985	n:40000
Cons ci ratio: 8.366658e-03	ci left: 8.422990e-01	ci right 8.494007e-01	k: 33835	n:40000
KS ci ratio: 1.482657e-01	ci left: 1.590033e-02	ci right 1.847045e-02	k: 686	n:40000
C4orf21   40000 perm   10 sec   (3921 perm/sec)   p_kst 1.715000e-02   p_cons 8.458750e-01   p_joint 4.962500e-02

Joint ci ratio: 8.732482e-02	ci left: 3.704578e-02	ci right 4.044804e-02	k: 1936	n:50000
Cons ci ratio: 7.486624e-03	ci left: 8.425641e-01	ci right 8.489157e-01	k: 42288	n:50000
KS ci ratio: 1.325935e-01	ci left: 1.603978e-02	ci right 1.833677e-02	k: 858	n:50000
C4orf21   50000 perm   13 sec   (3845 perm/sec)   p_kst 1.716000e-02   p_cons 8.457600e-01   p_joint 3.872000e-02

Joint ci ratio: 7.974140e-02	ci left: 3.717069e-02	ci right 4.027413e-02	k: 2322	n:60000
Cons ci ratio: 6.865960e-03	ci left: 8.416258e-01	ci right 8.474408e-01	k: 50673	n:60000
KS ci ratio: 1.216912e-01	ci left: 1.596455e-02	ci right 1.804922e-02	k: 1019	n:60000
C4orf21   60000 perm   16 sec   (3781 perm/sec)   p_kst 1.698333e-02   p_cons 8.445500e-01   p_joint 3.870000e-02

Joint ci ratio: 6.397811e-02	ci left: 4.926921e-02	ci right 5.253958e-02	k: 3562	n:70000
Cons ci ratio: 6.363369e-03	ci left: 8.415639e-01	ci right 8.469504e-01	k: 59099	n:70000
KS ci ratio: 1.134918e-01	ci left: 1.580530e-02	ci right 1.772078e-02	k: 1172	n:70000
C4orf21   70000 perm   19 sec   (3729 perm/sec)   p_kst 1.674286e-02   p_cons 8.442714e-01   p_joint 5.088571e-02

Joint ci ratio: 6.173839e-02	ci left: 4.649192e-02	ci right 4.946597e-02	k: 3837	n:80000
Cons ci ratio: 5.958517e-03	ci left: 8.414669e-01	ci right 8.465082e-01	k: 67520	n:80000
KS ci ratio: 1.063061e-01	ci left: 1.582333e-02	ci right 1.761197e-02	k: 1336	n:80000
C4orf21   80000 perm   22 sec   (3666 perm/sec)   p_kst 1.670000e-02   p_cons 8.440000e-01   p_joint 4.796250e-02

Joint ci ratio: 5.572209e-02	ci left: 5.066800e-02	ci right 5.358318e-02	k: 4690	n:90000
Cons ci ratio: 5.616076e-03	ci left: 8.416910e-01	ci right 8.464423e-01	k: 75967	n:90000
KS ci ratio: 9.982636e-02	ci left: 1.600290e-02	ci right 1.769511e-02	k: 1515	n:90000
C4orf21   90000 perm   25 sec   (3620 perm/sec)   p_kst 1.683333e-02   p_cons 8.440778e-01   p_joint 5.211111e-02

Outputting figure to mutsig2_images.part000000000025/C4orf21.6_6423_90000_0.016833_0.84408_0.052111.png
                gene_name: C4orf21
               theta_stop: 0.100 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.054 

Current progress: 29 percent done.
C4orf31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.480552e-02	ci left: 8.685630e-01	ci right 8.816176e-01	k: 8752	n:10000
Cons ci ratio: 4.384994e-02	ci left: 4.343291e-01	ci right 4.539035e-01	k: 4441	n:10000
KS ci ratio: 2.201022e-02	ci left: 7.518078e-01	ci right 7.686403e-01	k: 7603	n:10000
C4orf31   10000 perm   2 sec   (5917 perm/sec)   p_kst 7.603000e-01   p_cons 4.441000e-01   p_joint 8.752000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf31.5_1719_10000_0.7603_0.4441_0.8752.png
                gene_name: C4orf31
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 32 percent done.
C3AR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.972212e-02	ci left: 2.920188e-01	ci right 3.100972e-01	k: 3010	n:10000
Cons ci ratio: 1.061076e-02	ci left: 9.266822e-01	ci right 9.366646e-01	k: 9318	n:10000
KS ci ratio: 8.490444e-02	ci left: 1.681880e-01	ci right 1.832014e-01	k: 1756	n:10000
C3AR1   10000 perm   2 sec   (6483 perm/sec)   p_kst 1.756000e-01   p_cons 9.318000e-01   p_joint 3.010000e-01

Outputting figure to mutsig2_images.part000000000025/C3AR1.4_1453_10000_0.1756_0.9318_0.301.png
                gene_name: C3AR1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 34 percent done.
C3orf15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.890957e-01	ci left: 3.729324e-02	ci right 4.517686e-02	k: 411	n:10000
Cons ci ratio: 3.242904e-01	ci left: 1.206533e-02	ci right 1.682370e-02	k: 143	n:10000
KS ci ratio: 6.309380e-02	ci left: 2.696308e-01	ci right 2.872985e-01	k: 2784	n:10000
C3orf15   10000 perm   2 sec   (5820 perm/sec)   p_kst 2.784000e-01   p_cons 1.430000e-02   p_joint 4.110000e-02

Joint ci ratio: 1.173992e-01	ci left: 4.969223e-02	ci right 5.593859e-02	k: 1055	n:20000
Cons ci ratio: 2.231068e-01	ci left: 1.350289e-02	ci right 1.694016e-02	k: 303	n:20000
KS ci ratio: 4.464208e-02	ci left: 2.719972e-01	ci right 2.844673e-01	k: 5564	n:20000
C3orf15   20000 perm   4 sec   (5301 perm/sec)   p_kst 2.782000e-01   p_cons 1.515000e-02   p_joint 5.275000e-02

Joint ci ratio: 1.083574e-01	ci left: 3.953067e-02	ci right 4.409193e-02	k: 1253	n:30000
Cons ci ratio: 1.825744e-01	ci left: 1.375047e-02	ci right 1.654458e-02	k: 453	n:30000
KS ci ratio: 3.628301e-02	ci left: 2.749903e-01	ci right 2.851856e-01	k: 8402	n:30000
C3orf15   30000 perm   6 sec   (5050 perm/sec)   p_kst 2.800667e-01   p_cons 1.510000e-02   p_joint 4.176667e-02

Joint ci ratio: 9.392864e-02	ci left: 3.976182e-02	ci right 4.370506e-02	k: 1668	n:40000
Cons ci ratio: 1.649332e-01	ci left: 1.277557e-02	ci right 1.509579e-02	k: 556	n:40000
KS ci ratio: 3.141231e-02	ci left: 2.758025e-01	ci right 2.846294e-01	k: 11208	n:40000
C3orf15   40000 perm   8 sec   (4926 perm/sec)   p_kst 2.802000e-01   p_cons 1.390000e-02   p_joint 4.170000e-02

Joint ci ratio: 6.533495e-02	ci left: 6.496155e-02	ci right 6.936886e-02	k: 3357	n:50000
Cons ci ratio: 1.456497e-01	ci left: 1.323906e-02	ci right 1.533789e-02	k: 713	n:50000
KS ci ratio: 2.798536e-02	ci left: 2.778595e-01	ci right 2.857659e-01	k: 14090	n:50000
C3orf15   50000 perm   10 sec   (4822 perm/sec)   p_kst 2.818000e-01   p_cons 1.426000e-02   p_joint 6.714000e-02

Joint ci ratio: 6.905654e-02	ci left: 4.920392e-02	ci right 5.273967e-02	k: 3057	n:60000
Cons ci ratio: 1.273323e-01	ci left: 1.455901e-02	ci right 1.655492e-02	k: 932	n:60000
KS ci ratio: 2.551362e-02	ci left: 2.787338e-01	ci right 2.859539e-01	k: 16940	n:60000
C3orf15   60000 perm   13 sec   (4732 perm/sec)   p_kst 2.823333e-01   p_cons 1.553333e-02   p_joint 5.095000e-02

Joint ci ratio: 6.665252e-02	ci left: 4.551414e-02	ci right 4.866640e-02	k: 3295	n:70000
Cons ci ratio: 1.174765e-01	ci left: 1.473658e-02	ci right 1.658960e-02	k: 1095	n:70000
KS ci ratio: 2.371421e-02	ci left: 2.774160e-01	ci right 2.840879e-01	k: 19652	n:70000
C3orf15   70000 perm   15 sec   (4652 perm/sec)   p_kst 2.807429e-01   p_cons 1.564286e-02   p_joint 4.707143e-02

Joint ci ratio: 5.637773e-02	ci left: 5.537861e-02	ci right 5.860361e-02	k: 4558	n:80000
Cons ci ratio: 1.106351e-01	ci left: 1.459455e-02	ci right 1.631585e-02	k: 1235	n:80000
KS ci ratio: 2.211933e-02	ci left: 2.787839e-01	ci right 2.850319e-01	k: 22552	n:80000
C3orf15   80000 perm   18 sec   (4514 perm/sec)   p_kst 2.819000e-01   p_cons 1.543750e-02   p_joint 5.697500e-02

Joint ci ratio: 5.767462e-02	ci left: 4.741238e-02	ci right 5.023901e-02	k: 4393	n:90000
Cons ci ratio: 1.042508e-01	ci left: 1.465974e-02	ci right 1.628282e-02	k: 1391	n:90000
KS ci ratio: 2.090198e-02	ci left: 2.780428e-01	ci right 2.839269e-01	k: 25288	n:90000
C3orf15   90000 perm   20 sec   (4446 perm/sec)   p_kst 2.809778e-01   p_cons 1.545556e-02   p_joint 4.881111e-02

Joint ci ratio: 5.852247e-02	ci left: 4.168195e-02	ci right 4.420464e-02	k: 4293	n:100000
Cons ci ratio: 9.947968e-02	ci left: 1.452882e-02	ci right 1.605949e-02	k: 1528	n:100000
KS ci ratio: 1.926184e-02	ci left: 2.900405e-01	ci right 2.956915e-01	k: 29286	n:100000
C3orf15   100000 perm   23 sec   (4377 perm/sec)   p_kst 2.928600e-01   p_cons 1.528000e-02   p_joint 4.293000e-02

Outputting figure to mutsig2_images.part000000000025/C3orf15.4_2372_100000_0.29286_0.01528_0.04293.png
                gene_name: C3orf15
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.044 

Current progress: 37 percent done.
C3orf19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.931551e-02	ci left: 3.775373e-01	ci right 3.967285e-01	k: 3871	n:10000
Cons ci ratio: 1.901722e-02	ci left: 8.016636e-01	ci right 8.171557e-01	k: 8095	n:10000
KS ci ratio: 6.864576e-02	ci left: 2.373862e-01	ci right 2.543621e-01	k: 2458	n:10000
C3orf19   10000 perm   2 sec   (6564 perm/sec)   p_kst 2.458000e-01   p_cons 8.095000e-01   p_joint 3.871000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf19.4_1448_10000_0.2458_0.8095_0.3871.png
                gene_name: C3orf19
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 39 percent done.
C3orf23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.539588e-02	ci left: 5.409873e-01	ci right 5.605831e-01	k: 5508	n:10000
Cons ci ratio: 2.593006e-02	ci left: 6.864752e-01	ci right 7.046108e-01	k: 6956	n:10000
KS ci ratio: 4.612326e-02	ci left: 4.096033e-01	ci right 4.290437e-01	k: 4193	n:10000
C3orf23   10000 perm   2 sec   (5525 perm/sec)   p_kst 4.193000e-01   p_cons 6.956000e-01   p_joint 5.508000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf23.4_1583_10000_0.4193_0.6956_0.5508.png
                gene_name: C3orf23
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 41 percent done.
C3orf26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.227051e-02	ci left: 5.863057e-01	ci right 6.056384e-01	k: 5960	n:10000
Cons ci ratio: 4.357574e-02	ci left: 4.374215e-01	ci right 4.570092e-01	k: 4472	n:10000
KS ci ratio: 3.034183e-02	ci left: 6.157275e-01	ci right 6.347995e-01	k: 6253	n:10000
C3orf26   10000 perm   1 sec   (6937 perm/sec)   p_kst 6.253000e-01   p_cons 4.472000e-01   p_joint 5.960000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf26.4_894_10000_0.6253_0.4472_0.596.png
                gene_name: C3orf26
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 44 percent done.
C3orf64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.921903e-02	ci left: 6.333178e-01	ci right 6.521989e-01	k: 6428	n:10000
Cons ci ratio: 4.083508e-02	ci left: 4.696656e-01	ci right 4.893464e-01	k: 4795	n:10000
KS ci ratio: 4.429668e-02	ci left: 4.293421e-01	ci right 4.488934e-01	k: 4391	n:10000
C3orf64   10000 perm   1 sec   (6795 perm/sec)   p_kst 4.391000e-01   p_cons 4.795000e-01   p_joint 6.428000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf64.4_1380_10000_0.4391_0.4795_0.6428.png
                gene_name: C3orf64
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 46 percent done.
C3orf58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.426573e-01	ci left: 6.517166e-02	ci right 7.528044e-02	k: 701	n:10000
Cons ci ratio: 5.575464e-02	ci left: 3.214794e-01	ci right 3.400192e-01	k: 3307	n:10000
KS ci ratio: 1.490358e-01	ci left: 5.985938e-02	ci right 6.959607e-02	k: 646	n:10000
C3orf58   10000 perm   2 sec   (6284 perm/sec)   p_kst 6.460000e-02   p_cons 3.307000e-01   p_joint 7.010000e-02

Joint ci ratio: 9.962254e-02	ci left: 6.825964e-02	ci right 7.546543e-02	k: 1436	n:20000
Cons ci ratio: 3.903594e-02	ci left: 3.286073e-01	ci right 3.417407e-01	k: 6703	n:20000
KS ci ratio: 1.034344e-01	ci left: 6.352427e-02	ci right 7.050225e-02	k: 1339	n:20000
C3orf58   20000 perm   3 sec   (5924 perm/sec)   p_kst 6.695000e-02   p_cons 3.351500e-01   p_joint 7.180000e-02

Joint ci ratio: 6.821175e-02	ci left: 9.577396e-02	ci right 1.025706e-01	k: 2974	n:30000
Cons ci ratio: 3.277560e-02	ci left: 3.175432e-01	ci right 3.281578e-01	k: 9685	n:30000
KS ci ratio: 8.298165e-02	ci left: 6.635326e-02	ci right 7.213050e-02	k: 2076	n:30000
C3orf58   30000 perm   5 sec   (5731 perm/sec)   p_kst 6.920000e-02   p_cons 3.228333e-01   p_joint 9.913333e-02

Outputting figure to mutsig2_images.part000000000025/C3orf58.3_1339_30000_0.0692_0.32283_0.099133.png
                gene_name: C3orf58
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 49 percent done.
C4orf22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.609321e-02	ci left: 8.487612e-01	ci right 8.626309e-01	k: 8558	n:10000
Cons ci ratio: 1.261589e-02	ci left: 9.003168e-01	ci right 9.118454e-01	k: 9062	n:10000
KS ci ratio: 3.517473e-02	ci left: 5.440928e-01	ci right 5.636758e-01	k: 5539	n:10000
C4orf22   10000 perm   1 sec   (7243 perm/sec)   p_kst 5.539000e-01   p_cons 9.062000e-01   p_joint 8.558000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf22.3_726_10000_0.5539_0.9062_0.8558.png
                gene_name: C4orf22
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 51 percent done.
C4orf26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.276929e-02	ci left: 1.755630e-01	ci right 1.908220e-01	k: 1831	n:10000
Cons ci ratio: 1.730584e-01	ci left: 4.456333e-02	ci right 5.310195e-02	k: 487	n:10000
KS ci ratio: 8.366514e-02	ci left: 1.724157e-01	ci right 1.875712e-01	k: 1799	n:10000
C4orf26   10000 perm   1 sec   (7708 perm/sec)   p_kst 1.799000e-01   p_cons 4.870000e-02   p_joint 1.831000e-01

Joint ci ratio: 7.477795e-02	ci left: 1.162646e-01	ci right 1.253460e-01	k: 2415	n:20000
Cons ci ratio: 1.246736e-01	ci left: 4.415643e-02	ci right 5.007613e-02	k: 941	n:20000
KS ci ratio: 5.883244e-02	ci left: 1.762787e-01	ci right 1.870140e-01	k: 3632	n:20000
C4orf26   20000 perm   3 sec   (6745 perm/sec)   p_kst 1.816000e-01   p_cons 4.705000e-02   p_joint 1.207500e-01

Joint ci ratio: 4.280170e-02	ci left: 2.138017e-01	ci right 2.231863e-01	k: 6554	n:30000
Cons ci ratio: 1.009372e-01	ci left: 4.544559e-02	ci right 5.030911e-02	k: 1435	n:30000
KS ci ratio: 4.768157e-02	ci left: 1.794643e-01	ci right 1.882637e-01	k: 5515	n:30000
C4orf26   30000 perm   5 sec   (6181 perm/sec)   p_kst 1.838333e-01   p_cons 4.783333e-02   p_joint 2.184667e-01

Joint ci ratio: 4.649298e-02	ci left: 1.473803e-01	ci right 1.544204e-01	k: 6035	n:40000
Cons ci ratio: 8.774390e-02	ci left: 4.543593e-02	ci right 4.963007e-02	k: 1900	n:40000
KS ci ratio: 4.114851e-02	ci left: 1.811060e-01	ci right 1.887398e-01	k: 7396	n:40000
C4orf26   40000 perm   7 sec   (5777 perm/sec)   p_kst 1.849000e-01   p_cons 4.750000e-02   p_joint 1.508750e-01

Outputting figure to mutsig2_images.part000000000025/C4orf26.3_401_40000_0.1849_0.0475_0.15088.png
                gene_name: C4orf26
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 54 percent done.
C4orf27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.246035e-02	ci left: 3.487950e-01	ci right 3.676877e-01	k: 3582	n:10000
Cons ci ratio: 6.190635e-02	ci left: 2.772555e-01	ci right 2.950692e-01	k: 2861	n:10000
KS ci ratio: 6.840600e-02	ci left: 2.386708e-01	ci right 2.556767e-01	k: 2471	n:10000
C4orf27   10000 perm   1 sec   (6673 perm/sec)   p_kst 2.471000e-01   p_cons 2.861000e-01   p_joint 3.582000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf27.3_1073_10000_0.2471_0.2861_0.3582.png
                gene_name: C4orf27
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 56 percent done.
C5AR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.970424e-02	ci left: 6.256770e-01	ci right 6.446442e-01	k: 6352	n:10000
Cons ci ratio: 3.099272e-02	ci left: 6.056818e-01	ci right 6.248510e-01	k: 6153	n:10000
KS ci ratio: 5.080236e-02	ci left: 3.636092e-01	ci right 3.826648e-01	k: 3731	n:10000
C5AR1   10000 perm   1 sec   (6824 perm/sec)   p_kst 3.731000e-01   p_cons 6.153000e-01   p_joint 6.352000e-01

Outputting figure to mutsig2_images.part000000000025/C5AR1.3_1060_10000_0.3731_0.6153_0.6352.png
                gene_name: C5AR1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 59 percent done.
C5orf25
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside exons of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 61 percent done.
C3orf24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.011568e-02	ci left: 6.192445e-01	ci right 6.382804e-01	k: 6288	n:10000
Cons ci ratio: 3.783063e-02	ci left: 5.078524e-01	ci right 5.275373e-01	k: 5177	n:10000
KS ci ratio: 6.006440e-02	ci left: 2.896400e-01	ci right 3.076774e-01	k: 2986	n:10000
C3orf24   10000 perm   1 sec   (7284 perm/sec)   p_kst 2.986000e-01   p_cons 5.177000e-01   p_joint 6.288000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf24.2_538_10000_0.2986_0.5177_0.6288.png
                gene_name: C3orf24
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 63 percent done.
C3orf27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.111420e-02	ci left: 4.662695e-01	ci right 4.859444e-01	k: 4761	n:10000
Cons ci ratio: 1.010034e-01	ci left: 1.242496e-01	ci right 1.375662e-01	k: 1308	n:10000
KS ci ratio: 3.432174e-02	ci left: 5.562179e-01	ci right 5.757437e-01	k: 5660	n:10000
C3orf27   10000 perm   1 sec   (7405 perm/sec)   p_kst 5.660000e-01   p_cons 1.308000e-01   p_joint 4.761000e-01

Joint ci ratio: 4.175824e-02	ci left: 2.994181e-01	ci right 3.122384e-01	k: 6116	n:20000
Cons ci ratio: 7.151575e-02	ci left: 1.259097e-01	ci right 1.352980e-01	k: 2611	n:20000
KS ci ratio: 2.400740e-02	ci left: 5.644564e-01	ci right 5.782228e-01	k: 11427	n:20000
C3orf27   20000 perm   3 sec   (6605 perm/sec)   p_kst 5.713500e-01   p_cons 1.305500e-01   p_joint 3.058000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf27.2_454_20000_0.57135_0.13055_0.3058.png
                gene_name: C3orf27
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 66 percent done.
C3orf32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.125490e-02	ci left: 7.644585e-01	ci right 7.809823e-01	k: 7728	n:10000
KS ci ratio: 2.852276e-02	ci left: 6.443816e-01	ci right 6.631288e-01	k: 6538	n:10000
C3orf32   10000 perm   1 sec   (7024 perm/sec)   p_kst 6.538000e-01   p_cons 7.728000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C3orf32.2_1098_10000_0.6538_0.7728_1.png
                gene_name: C3orf32
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
C3orf33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.066901e-02	ci left: 9.259590e-01	ci right 9.359882e-01	k: 9311	n:10000
Cons ci ratio: 3.065336e-02	ci left: 6.109050e-01	ci right 6.300247e-01	k: 6205	n:10000
KS ci ratio: 2.118833e-02	ci left: 7.655723e-01	ci right 7.820679e-01	k: 7739	n:10000
C3orf33   10000 perm   1 sec   (7613 perm/sec)   p_kst 7.739000e-01   p_cons 6.205000e-01   p_joint 9.311000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf33.2_772_10000_0.7739_0.6205_0.9311.png
                gene_name: C3orf33
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 71 percent done.
C3orf34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.785795e-02	ci left: 6.550482e-01	ci right 6.736560e-01	k: 6644	n:10000
KS ci ratio: 3.462305e-02	ci left: 5.519083e-01	ci right 5.714558e-01	k: 5617	n:10000
C3orf34   10000 perm   1 sec   (7327 perm/sec)   p_kst 5.617000e-01   p_cons 6.644000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C3orf34.2_512_10000_0.5617_0.6644_1.png
                gene_name: C3orf34
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
C3orf36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.494065e-01	ci left: 5.956990e-02	ci right 6.928573e-02	k: 643	n:10000
Cons ci ratio: 5.524235e-02	ci left: 3.255497e-01	ci right 3.441466e-01	k: 3348	n:10000
KS ci ratio: 2.870972e-01	ci left: 1.567108e-02	ci right 2.101476e-02	k: 182	n:10000
C3orf36   10000 perm   1 sec   (7306 perm/sec)   p_kst 1.820000e-02   p_cons 3.348000e-01   p_joint 6.430000e-02

Joint ci ratio: 1.068959e-01	ci left: 5.962273e-02	ci right 6.640500e-02	k: 1259	n:20000
Cons ci ratio: 3.950030e-02	ci left: 3.233839e-01	ci right 3.364656e-01	k: 6598	n:20000
KS ci ratio: 1.997038e-01	ci left: 1.701043e-02	ci right 2.083125e-02	k: 377	n:20000
C3orf36   20000 perm   3 sec   (6488 perm/sec)   p_kst 1.885000e-02   p_cons 3.299000e-01   p_joint 6.295000e-02

Joint ci ratio: 5.699523e-02	ci left: 1.323044e-01	ci right 1.400995e-01	k: 4085	n:30000
Cons ci ratio: 3.217786e-02	ci left: 3.256086e-01	ci right 3.362908e-01	k: 9928	n:30000
KS ci ratio: 1.602024e-01	ci left: 1.799732e-02	ci right 2.116335e-02	k: 586	n:30000
C3orf36   30000 perm   5 sec   (6176 perm/sec)   p_kst 1.953333e-02   p_cons 3.309333e-01   p_joint 1.361667e-01

Joint ci ratio: 5.293880e-02	ci left: 1.173496e-01	ci right 1.237556e-01	k: 4821	n:40000
Cons ci ratio: 2.794674e-02	ci left: 3.250682e-01	ci right 3.343066e-01	k: 13187	n:40000
KS ci ratio: 1.377263e-01	ci left: 1.848136e-02	ci right 2.123896e-02	k: 793	n:40000
C3orf36   40000 perm   7 sec   (5987 perm/sec)   p_kst 1.982500e-02   p_cons 3.296750e-01   p_joint 1.205250e-01

Joint ci ratio: 4.379552e-02	ci left: 1.350672e-01	ci right 1.411349e-01	k: 6904	n:50000
Cons ci ratio: 2.503596e-02	ci left: 3.248617e-01	ci right 3.331181e-01	k: 16449	n:50000
KS ci ratio: 1.219081e-01	ci left: 1.902359e-02	ci right 2.151254e-02	k: 1012	n:50000
C3orf36   50000 perm   9 sec   (5810 perm/sec)   p_kst 2.024000e-02   p_cons 3.289800e-01   p_joint 1.380800e-01

Joint ci ratio: 3.591806e-02	ci left: 1.626501e-01	ci right 1.686156e-01	k: 9937	n:60000
Cons ci ratio: 2.289781e-02	ci left: 3.243930e-01	ci right 3.319236e-01	k: 19689	n:60000
KS ci ratio: 1.120224e-01	ci left: 1.887851e-02	ci right 2.113492e-02	k: 1199	n:60000
C3orf36   60000 perm   11 sec   (5686 perm/sec)   p_kst 1.998333e-02   p_cons 3.281500e-01   p_joint 1.656167e-01

Joint ci ratio: 3.555678e-02	ci left: 1.453060e-01	ci right 1.505803e-01	k: 10355	n:70000
Cons ci ratio: 2.121208e-02	ci left: 3.244081e-01	ci right 3.313776e-01	k: 22952	n:70000
KS ci ratio: 1.037127e-01	ci left: 1.896175e-02	ci right 2.104973e-02	k: 1399	n:70000
C3orf36   70000 perm   13 sec   (5542 perm/sec)   p_kst 1.998571e-02   p_cons 3.278857e-01   p_joint 1.479286e-01

Joint ci ratio: 2.918851e-02	ci left: 1.812829e-01	ci right 1.866651e-01	k: 14717	n:80000
Cons ci ratio: 1.984039e-02	ci left: 3.246719e-01	ci right 3.311906e-01	k: 26234	n:80000
KS ci ratio: 9.701447e-02	ci left: 1.902885e-02	ci right 2.098118e-02	k: 1599	n:80000
C3orf36   80000 perm   15 sec   (5433 perm/sec)   p_kst 1.998750e-02   p_cons 3.279250e-01   p_joint 1.839625e-01

Outputting figure to mutsig2_images.part000000000025/C3orf36.2_502_80000_0.019987_0.32793_0.18396.png
                gene_name: C3orf36
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 76 percent done.
C3orf38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.938760e-03	ci left: 9.879601e-01	ci right 9.919467e-01	k: 9901	n:10000
Cons ci ratio: 4.490424e-02	ci left: 4.226610e-01	ci right 4.421784e-01	k: 4324	n:10000
KS ci ratio: 8.033598e-02	ci left: 1.845176e-01	ci right 2.000620e-01	k: 1922	n:10000
C3orf38   10000 perm   2 sec   (6498 perm/sec)   p_kst 1.922000e-01   p_cons 4.324000e-01   p_joint 9.901000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf38.2_1002_10000_0.1922_0.4324_0.9901.png
                gene_name: C3orf38
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 78 percent done.
C3orf59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.402930e-02	ci left: 5.604280e-01	ci right 5.799311e-01	k: 5702	n:10000
Cons ci ratio: 1.052060e-01	ci left: 1.154507e-01	ci right 1.283705e-01	k: 1218	n:10000
KS ci ratio: 6.160471e-02	ci left: 2.792365e-01	ci right 2.970871e-01	k: 2881	n:10000
C3orf59   10000 perm   1 sec   (6676 perm/sec)   p_kst 2.881000e-01   p_cons 1.218000e-01   p_joint 5.702000e-01

Joint ci ratio: 5.718452e-02	ci left: 1.847812e-01	ci right 1.957090e-01	k: 3804	n:20000
Cons ci ratio: 7.483080e-02	ci left: 1.161170e-01	ci right 1.251936e-01	k: 2412	n:20000
KS ci ratio: 4.383362e-02	ci left: 2.793464e-01	ci right 2.919160e-01	k: 5712	n:20000
C3orf59   20000 perm   3 sec   (6062 perm/sec)   p_kst 2.856000e-01   p_cons 1.206000e-01   p_joint 1.902000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf59.2_1484_20000_0.2856_0.1206_0.1902.png
                gene_name: C3orf59
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 80 percent done.
C3orf70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.393915e-02	ci left: 5.617312e-01	ci right 5.812271e-01	k: 5715	n:10000
Cons ci ratio: 5.524235e-02	ci left: 3.255497e-01	ci right 3.441466e-01	k: 3348	n:10000
KS ci ratio: 4.645628e-02	ci left: 4.061158e-01	ci right 4.255332e-01	k: 4158	n:10000
C3orf70   10000 perm   1 sec   (7058 perm/sec)   p_kst 4.158000e-01   p_cons 3.348000e-01   p_joint 5.715000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf70.2_761_10000_0.4158_0.3348_0.5715.png
                gene_name: C3orf70
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 83 percent done.
C3orf79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.763342e-02	ci left: 6.586720e-01	ci right 6.772301e-01	k: 6680	n:10000
Cons ci ratio: 6.632113e-02	ci left: 2.502371e-01	ci right 2.675036e-01	k: 2588	n:10000
KS ci ratio: 4.673464e-02	ci left: 4.032266e-01	ci right 4.226242e-01	k: 4129	n:10000
C3orf79   10000 perm   1 sec   (7319 perm/sec)   p_kst 4.129000e-01   p_cons 2.588000e-01   p_joint 6.680000e-01

Outputting figure to mutsig2_images.part000000000025/C3orf79.2_315_10000_0.4129_0.2588_0.668.png
                gene_name: C3orf79
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 85 percent done.
C4orf14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.077657e-02	ci left: 9.246163e-01	ci right 9.347317e-01	k: 9298	n:10000
Cons ci ratio: 6.222604e-02	ci left: 2.751757e-01	ci right 2.929502e-01	k: 2840	n:10000
KS ci ratio: 1.603451e-02	ci left: 8.496789e-01	ci right 8.635127e-01	k: 8567	n:10000
C4orf14   10000 perm   2 sec   (6416 perm/sec)   p_kst 8.567000e-01   p_cons 2.840000e-01   p_joint 9.298000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf14.2_2125_10000_0.8567_0.284_0.9298.png
                gene_name: C4orf14
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 88 percent done.
C4orf35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.273467e-02	ci left: 2.719080e-01	ci right 2.896199e-01	k: 2807	n:10000
Cons ci ratio: 5.204093e-02	ci left: 3.524727e-01	ci right 3.714078e-01	k: 3619	n:10000
KS ci ratio: 6.672096e-02	ci left: 2.479627e-01	ci right 2.651793e-01	k: 2565	n:10000
C4orf35   10000 perm   1 sec   (6942 perm/sec)   p_kst 2.565000e-01   p_cons 3.619000e-01   p_joint 2.807000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf35.2_1192_10000_0.2565_0.3619_0.2807.png
                gene_name: C4orf35
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 90 percent done.
C4orf43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.240467e-02	ci left: 5.842987e-01	ci right 6.036465e-01	k: 5940	n:10000
Cons ci ratio: 5.509389e-02	ci left: 3.267412e-01	ci right 3.453544e-01	k: 3360	n:10000
KS ci ratio: 6.859028e-02	ci left: 2.376826e-01	ci right 2.546655e-01	k: 2461	n:10000
C4orf43   10000 perm   1 sec   (7135 perm/sec)   p_kst 2.461000e-01   p_cons 3.360000e-01   p_joint 5.940000e-01

Outputting figure to mutsig2_images.part000000000025/C4orf43.2_640_10000_0.2461_0.336_0.594.png
                gene_name: C4orf43
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 93 percent done.
C4orf45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.864716e-02	ci left: 2.996526e-01	ci right 3.178589e-01	k: 3087	n:10000
KS ci ratio: 1.182134e-02	ci left: 9.111117e-01	ci right 9.220441e-01	k: 9167	n:10000
C4orf45   10000 perm   1 sec   (7302 perm/sec)   p_kst 9.167000e-01   p_cons 3.087000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C4orf45.2_581_10000_0.9167_0.3087_1.png
                gene_name: C4orf45
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
C5orf22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.153763e-03	ci left: 9.803783e-01	ci right 9.855349e-01	k: 9831	n:10000
KS ci ratio: 1.604104e-02	ci left: 8.495769e-01	ci right 8.634147e-01	k: 8566	n:10000
C5orf22   10000 perm   2 sec   (6509 perm/sec)   p_kst 8.566000e-01   p_cons 9.831000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000025/C5orf22.2_1365_10000_0.8566_0.9831_1.png
                gene_name: C5orf22
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
C5orf28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.545154e-03	ci left: 9.394165e-01	ci right 9.485227e-01	k: 9441	n:10000
Cons ci ratio: 4.918069e-02	ci left: 3.788311e-01	ci right 3.980340e-01	k: 3884	n:10000
KS ci ratio: 1.293223e-02	ci left: 8.959025e-01	ci right 9.076623e-01	k: 9019	n:10000
C5orf28   10000 perm   1 sec   (7244 perm/sec)   p_kst 9.019000e-01   p_cons 3.884000e-01   p_joint 9.441000e-01

Outputting figure to mutsig2_images.part000000000025/C5orf28.2_656_10000_0.9019_0.3884_0.9441.png
                gene_name: C5orf28
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000025
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 25 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1417>
Subject: Job 9893862: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1417>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000026> was used as the working directory.
Started at Fri Oct  5 23:58:29 2012
Results reported at Sat Oct  6 00:51:26 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000026.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000026.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 26  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000026.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3440.08 sec.
    Max Memory :      3581 MB
    Max Swap   :      5962 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
26
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 26
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 26: processing genes 2255 - 2344
Calculating significance of each gene.
Using projection method.
2255	C5orf30	3.891930e-01
2256	C5orf32	1
2257	C5orf33	1
2258	C5orf34	7.856450e-01
2259	C5orf35	4.703341e-01
In gene C5orf36 the following bins exceed PROBCAP:
    COAD-A6-2678	categ 6	N = 987     n = 1	mu =   2.07e-07
2260	C5orf36	7.803562e-03
2261	C5orf38	3.488509e-01
2262	C5orf39	1
2263	C5orf4	2.519920e-01
2264	C5orf40	5.128249e-01
2265	C5orf41	2.216267e-01
2266	C5orf42	8.522383e-02
2267	C5orf43	1.803665e-01
2268	C5orf44	1
2269	C5orf45	6.749716e-01
2270	C5orf46	1
2271	C5orf48	3.735072e-01
2272	C5orf49	9.846502e-03
2273	C5orf51	1.220609e-01
2274	C5orf53	2.156666e-01
2275	C5orf54	9.366363e-01
2276	C5orf55	1
2277	C5orf56	2.601819e-01
2278	C5orf58	2.688587e-01
2279	C6	7.094752e-03
2280	C6orf1	1
2281	C6orf10	5.357269e-03
2282	C6orf105	6.569606e-01
2283	C6orf106	7.666845e-01
2284	C6orf108	1
2285	C6orf114	3.632416e-01
2286	C6orf115	2.666291e-01
2287	C6orf118	3.719950e-01
2288	C6orf120	1
2289	C6orf125	4.833729e-01
2290	C6orf126	1
2291	C6orf127	5.005066e-01
2292	C6orf129	2.952765e-01
2293	C6orf130	1
2294	C6orf134	1
2295	C6orf136	4.328661e-01
2296	C6orf138	3.845218e-01
2297	C6orf142	8.064414e-01
2298	C6orf145	1
2299	C6orf146	4.329040e-01
2300	C6orf15	2.428112e-01
2301	C6orf150	3.218695e-01
2302	C6orf153	1.265189e-01
2303	C6orf154	1
2304	C6orf162	3.436432e-01
2305	C6orf165	2.568303e-01
2306	C6orf167	1.627254e-01
2307	C6orf168	8.889679e-01
2308	C6orf170	6.840915e-01
2309	C6orf174	3.051324e-02
2310	C6orf182	1
2311	C6orf186	3.243878e-01
2312	C6orf191	1
2313	C6orf192	5.467986e-01
2314	C6orf195	1
2315	C6orf201	1
2316	C6orf203	1.483572e-01
2317	C6orf204	1.459273e-02
2318	C6orf211	5.295436e-02
2319	C6orf221	2.339419e-01
2320	C6orf222	6.539237e-01
2321	C6orf223	1
2322	C6orf225	1
2323	C6orf226	1
2324	C6orf25	4.749150e-01
2325	C6orf26	6.165369e-01
2326	C6orf27	7.076806e-01
2327	C6orf47	7.827347e-01
2328	C6orf48	2.051423e-01
2329	C6orf57	1
2330	C6orf58	8.997594e-02
2331	C6orf62	1.921742e-01
2332	C6orf64	1.597626e-01
2333	C6orf70	4.086180e-01
2334	C6orf72	1
2335	C6orf81	3.523421e-01
2336	C6orf89	1.369370e-01
2337	C6orf97	8.856262e-03
2338	C7	3.376681e-01
2339	C7orf10	3.793152e-01
2340	C7orf11	9.324159e-02
2341	C7orf16	3.860697e-03
2342	C7orf23	4.358079e-01
2343	C7orf25	8.343664e-02
2344	C7orf26	9.206401e-01
Done

Running MutSig 2:
Scatter job 26: processing genes 2255 - 2344
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C5orf42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.083799e-01	ci left: 1.344771e-02	ci right 1.844006e-02	k: 158	n:10000
Cons ci ratio: 2.533769e-02	ci left: 6.962555e-01	ci right 7.142248e-01	k: 7053	n:10000
KS ci ratio: 4.539792e-01	ci left: 5.726273e-03	ci right 9.170022e-03	k: 73	n:10000
C5orf42   10000 perm   4 sec   (2352 perm/sec)   p_kst 7.300000e-03   p_cons 7.053000e-01   p_joint 1.580000e-02

Joint ci ratio: 1.701545e-01	ci left: 2.364696e-02	ci right 2.809234e-02	k: 516	n:20000
Cons ci ratio: 1.787382e-02	ci left: 6.999332e-01	ci right 7.126068e-01	k: 14126	n:20000
KS ci ratio: 3.221178e-01	ci left: 6.167283e-03	ci right 8.579269e-03	k: 146	n:20000
C5orf42   20000 perm   15 sec   (1367 perm/sec)   p_kst 7.300000e-03   p_cons 7.063000e-01   p_joint 2.580000e-02

Joint ci ratio: 1.505461e-01	ci left: 2.043410e-02	ci right 2.379267e-02	k: 662	n:30000
Cons ci ratio: 1.455653e-02	ci left: 7.021817e-01	ci right 7.125114e-01	k: 21221	n:30000
KS ci ratio: 2.721755e-01	ci left: 5.932465e-03	ci right 7.831589e-03	k: 205	n:30000
C5orf42   30000 perm   19 sec   (1568 perm/sec)   p_kst 6.833333e-03   p_cons 7.073667e-01   p_joint 2.206667e-02

Joint ci ratio: 1.427612e-01	ci left: 1.717789e-02	ci right 1.984267e-02	k: 739	n:40000
Cons ci ratio: 1.258709e-02	ci left: 7.035167e-01	ci right 7.124531e-01	k: 28320	n:40000
KS ci ratio: 2.481443e-01	ci left: 5.430825e-03	ci right 6.992166e-03	k: 247	n:40000
C5orf42   40000 perm   24 sec   (1693 perm/sec)   p_kst 6.175000e-03   p_cons 7.080000e-01   p_joint 1.847500e-02

Joint ci ratio: 1.489652e-01	ci left: 1.264162e-02	ci right 1.469541e-02	k: 682	n:50000
Cons ci ratio: 1.170262e-02	ci left: 6.876714e-01	ci right 6.957863e-01	k: 34587	n:50000
KS ci ratio: 2.256391e-01	ci left: 5.323021e-03	ci right 6.695285e-03	k: 299	n:50000
C5orf42   50000 perm   28 sec   (1762 perm/sec)   p_kst 5.980000e-03   p_cons 6.917400e-01   p_joint 1.364000e-02

Joint ci ratio: 1.419524e-01	ci left: 1.165848e-02	ci right 1.345580e-02	k: 752	n:60000
Cons ci ratio: 1.068108e-02	ci left: 6.881045e-01	ci right 6.955103e-01	k: 41509	n:60000
KS ci ratio: 2.054065e-01	ci left: 5.413539e-03	ci right 6.668296e-03	k: 361	n:60000
C5orf42   60000 perm   33 sec   (1811 perm/sec)   p_kst 6.016667e-03   p_cons 6.918167e-01   p_joint 1.253333e-02

Joint ci ratio: 1.060556e-01	ci left: 1.812668e-02	ci right 2.017060e-02	k: 1339	n:70000
Cons ci ratio: 9.777329e-03	ci left: 6.932078e-01	ci right 7.000331e-01	k: 48764	n:70000
KS ci ratio: 1.854427e-01	ci left: 5.754513e-03	ci right 6.944107e-03	k: 443	n:70000
C5orf42   70000 perm   38 sec   (1844 perm/sec)   p_kst 6.328571e-03   p_cons 6.966286e-01   p_joint 1.912857e-02

Joint ci ratio: 1.003282e-01	ci left: 1.778473e-02	ci right 1.967540e-02	k: 1497	n:80000
Cons ci ratio: 9.155137e-03	ci left: 6.929998e-01	ci right 6.993860e-01	k: 55696	n:80000
KS ci ratio: 1.735397e-01	ci left: 5.787356e-03	ci right 6.898901e-03	k: 506	n:80000
C5orf42   80000 perm   43 sec   (1869 perm/sec)   p_kst 6.325000e-03   p_cons 6.962000e-01   p_joint 1.871250e-02

Joint ci ratio: 9.774830e-02	ci left: 1.669673e-02	ci right 1.842345e-02	k: 1579	n:90000
Cons ci ratio: 8.629966e-03	ci left: 6.932615e-01	ci right 6.992814e-01	k: 62665	n:90000
KS ci ratio: 1.636691e-01	ci left: 5.814803e-03	ci right 6.861843e-03	k: 569	n:90000
C5orf42   90000 perm   48 sec   (1882 perm/sec)   p_kst 6.322222e-03   p_cons 6.962778e-01   p_joint 1.754444e-02

Joint ci ratio: 9.181958e-02	ci left: 1.707746e-02	ci right 1.873068e-02	k: 1789	n:100000
Cons ci ratio: 8.195197e-03	ci left: 6.929980e-01	ci right 6.987106e-01	k: 69586	n:100000
KS ci ratio: 1.549423e-01	ci left: 5.867037e-03	ci right 6.861921e-03	k: 635	n:100000
C5orf42   100000 perm   53 sec   (1892 perm/sec)   p_kst 6.350000e-03   p_cons 6.958600e-01   p_joint 1.789000e-02

Joint ci ratio: 9.069276e-02	ci left: 1.594205e-02	ci right 1.746540e-02	k: 1836	n:110000
Cons ci ratio: 7.814926e-03	ci left: 6.930715e-01	ci right 6.985181e-01	k: 76538	n:110000
KS ci ratio: 1.465349e-01	ci left: 5.989813e-03	ci right 6.945579e-03	k: 710	n:110000
C5orf42   110000 perm   58 sec   (1895 perm/sec)   p_kst 6.454545e-03   p_cons 6.958000e-01   p_joint 1.669091e-02

Joint ci ratio: 8.470721e-02	ci left: 1.679009e-02	ci right 1.828335e-02	k: 2103	n:120000
Cons ci ratio: 7.470002e-03	ci left: 6.938814e-01	ci right 6.990924e-01	k: 83579	n:120000
KS ci ratio: 1.396310e-01	ci left: 6.069208e-03	ci right 6.988218e-03	k: 782	n:120000
C5orf42   120000 perm   63 sec   (1898 perm/sec)   p_kst 6.516667e-03   p_cons 6.964917e-01   p_joint 1.752500e-02

Joint ci ratio: 8.140832e-02	ci left: 1.680922e-02	ci right 1.824319e-02	k: 2277	n:130000
Cons ci ratio: 7.169626e-03	ci left: 6.944166e-01	ci right 6.994208e-01	k: 90600	n:130000
KS ci ratio: 1.344126e-01	ci left: 6.062921e-03	ci right 6.943925e-03	k: 844	n:130000
C5orf42   130000 perm   69 sec   (1891 perm/sec)   p_kst 6.492308e-03   p_cons 6.969231e-01   p_joint 1.751538e-02

Joint ci ratio: 7.922687e-02	ci left: 1.650438e-02	ci right 1.787287e-02	k: 2405	n:140000
Cons ci ratio: 6.910606e-03	ci left: 6.943990e-01	ci right 6.992214e-01	k: 97554	n:140000
KS ci ratio: 1.297387e-01	ci left: 6.058080e-03	ci right 6.905412e-03	k: 906	n:140000
C5orf42   140000 perm   74 sec   (1889 perm/sec)   p_kst 6.471429e-03   p_cons 6.968143e-01   p_joint 1.717857e-02

Joint ci ratio: 6.847661e-02	ci left: 2.064737e-02	ci right 2.211788e-02	k: 3206	n:150000
Cons ci ratio: 6.590456e-03	ci left: 6.999321e-01	ci right 7.045668e-01	k: 105338	n:150000
KS ci ratio: 1.203187e-01	ci left: 6.603704e-03	ci right 7.455519e-03	k: 1053	n:150000
C5orf42   150000 perm   80 sec   (1884 perm/sec)   p_kst 7.020000e-03   p_cons 7.022533e-01   p_joint 2.137333e-02

Joint ci ratio: 6.570411e-02	ci left: 2.104697e-02	ci right 2.248293e-02	k: 3481	n:160000
Cons ci ratio: 6.377228e-03	ci left: 7.002657e-01	ci right 7.047519e-01	k: 112402	n:160000
KS ci ratio: 1.161483e-01	ci left: 6.658002e-03	ci right 7.485011e-03	k: 1130	n:160000
C5orf42   160000 perm   85 sec   (1876 perm/sec)   p_kst 7.062500e-03   p_cons 7.025125e-01   p_joint 2.175625e-02

Joint ci ratio: 6.596988e-02	ci left: 1.967538e-02	ci right 2.102340e-02	k: 3458	n:170000
Cons ci ratio: 6.189183e-03	ci left: 7.001731e-01	ci right 7.045259e-01	k: 119400	n:170000
KS ci ratio: 1.129500e-01	ci left: 6.637749e-03	ci right 7.438025e-03	k: 1195	n:170000
C5orf42   170000 perm   91 sec   (1867 perm/sec)   p_kst 7.029412e-03   p_cons 7.023529e-01   p_joint 2.034118e-02

Joint ci ratio: 6.635102e-02	ci left: 1.839067e-02	ci right 1.965822e-02	k: 3423	n:180000
Cons ci ratio: 6.015248e-03	ci left: 7.002039e-01	ci right 7.044340e-01	k: 126418	n:180000
KS ci ratio: 1.096088e-01	ci left: 6.668660e-03	ci right 7.447343e-03	k: 1269	n:180000
C5orf42   180000 perm   97 sec   (1855 perm/sec)   p_kst 7.050000e-03   p_cons 7.023222e-01   p_joint 1.901667e-02

Joint ci ratio: 6.648382e-02	ci left: 1.737068e-02	ci right 1.857041e-02	k: 3413	n:190000
Cons ci ratio: 5.855493e-03	ci left: 7.002119e-01	ci right 7.043293e-01	k: 133432	n:190000
KS ci ratio: 1.064679e-01	ci left: 6.706876e-03	ci right 7.466174e-03	k: 1345	n:190000
C5orf42   190000 perm   104 sec   (1834 perm/sec)   p_kst 7.078947e-03   p_cons 7.022737e-01   p_joint 1.796316e-02

Joint ci ratio: 6.563943e-02	ci left: 1.694459e-02	ci right 1.809946e-02	k: 3503	n:200000
Cons ci ratio: 5.709941e-03	ci left: 7.000652e-01	ci right 7.040789e-01	k: 140415	n:200000
KS ci ratio: 1.037662e-01	ci left: 6.717201e-03	ci right 7.457194e-03	k: 1416	n:200000
C5orf42   200000 perm   110 sec   (1825 perm/sec)   p_kst 7.080000e-03   p_cons 7.020750e-01   p_joint 1.751500e-02

Joint ci ratio: 6.276919e-02	ci left: 1.766068e-02	ci right 1.880981e-02	k: 3828	n:210000
Cons ci ratio: 5.570795e-03	ci left: 7.002295e-01	ci right 7.041459e-01	k: 147460	n:210000
KS ci ratio: 1.011577e-01	ci left: 6.740689e-03	ci right 7.463493e-03	k: 1490	n:210000
C5orf42   210000 perm   116 sec   (1814 perm/sec)   p_kst 7.095238e-03   p_cons 7.021905e-01   p_joint 1.822857e-02

Joint ci ratio: 6.221936e-02	ci left: 1.717100e-02	ci right 1.827812e-02	k: 3898	n:220000
Cons ci ratio: 5.444838e-03	ci left: 7.001112e-01	ci right 7.039381e-01	k: 154446	n:220000
KS ci ratio: 9.873649e-02	ci left: 6.762254e-03	ci right 7.469008e-03	k: 1564	n:220000
C5orf42   220000 perm   122 sec   (1807 perm/sec)   p_kst 7.109091e-03   p_cons 7.020273e-01   p_joint 1.771818e-02

Outputting figure to mutsig2_images.part000000000026/C5orf42.19_9798_220000_0.0071091_0.70203_0.017718.png
                gene_name: C5orf42
               theta_stop: 0.099 
                    nperm: 220000 
                     p_ks: 0.0071 
        ci_ks_bounds_left: 0.0068 
       ci_ks_bounds_right: 0.0075 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.018 

Current progress: 2 percent done.
C6orf97
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.667687e-02	ci left: 4.038243e-01	ci right 4.232261e-01	k: 4135	n:10000
KS ci ratio: 1.860317e-02	ci left: 8.084670e-01	ci right 8.237484e-01	k: 8162	n:10000
C6orf97   10000 perm   2 sec   (4494 perm/sec)   p_kst 8.162000e-01   p_cons 4.135000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf97.15_2192_10000_0.8162_0.4135_1.png
                gene_name: C6orf97
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
C6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.605580e-03	ci left: 9.498142e-01	ci right 9.581188e-01	k: 9541	n:10000
KS ci ratio: 7.703343e-03	ci left: 9.590082e-01	ci right 9.665191e-01	k: 9629	n:10000
C6   10000 perm   2 sec   (4469 perm/sec)   p_kst 9.629000e-01   p_cons 9.541000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6.13_2873_10000_0.9629_0.9541_1.png
                gene_name: C6
               theta_stop: 0.0086 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
C6orf174
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.467453e-01	ci left: 6.169346e-02	ci right 7.156083e-02	k: 665	n:10000
Cons ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
KS ci ratio: 8.664465e-02	ci left: 1.624881e-01	ci right 1.773047e-01	k: 1698	n:10000
C6orf174   10000 perm   2 sec   (4732 perm/sec)   p_kst 1.698000e-01   p_cons 2.810000e-02   p_joint 6.650000e-02

Joint ci ratio: 1.041864e-01	ci left: 6.264611e-02	ci right 6.958069e-02	k: 1321	n:20000
Cons ci ratio: 1.780934e-01	ci left: 2.154068e-02	ci right 2.579935e-02	k: 472	n:20000
KS ci ratio: 6.103007e-02	ci left: 1.657557e-01	ci right 1.762402e-01	k: 3419	n:20000
C6orf174   20000 perm   5 sec   (4239 perm/sec)   p_kst 1.709500e-01   p_cons 2.360000e-02   p_joint 6.605000e-02

Joint ci ratio: 9.576109e-02	ci left: 5.036128e-02	ci right 5.545908e-02	k: 1586	n:30000
Cons ci ratio: 1.379758e-01	ci left: 2.438964e-02	ci right 2.803623e-02	k: 785	n:30000
KS ci ratio: 4.996626e-02	ci left: 1.659628e-01	ci right 1.745011e-01	k: 5106	n:30000
C6orf174   30000 perm   7 sec   (4048 perm/sec)   p_kst 1.702000e-01   p_cons 2.616667e-02   p_joint 5.286667e-02

Joint ci ratio: 7.112679e-02	ci left: 6.805928e-02	ci right 7.310327e-02	k: 2822	n:40000
Cons ci ratio: 1.201995e-01	ci left: 2.434115e-02	ci right 2.747819e-02	k: 1035	n:40000
KS ci ratio: 4.321990e-02	ci left: 1.668756e-01	ci right 1.742722e-01	k: 6822	n:40000
C6orf174   40000 perm   10 sec   (3904 perm/sec)   p_kst 1.705500e-01   p_cons 2.587500e-02   p_joint 7.055000e-02

Joint ci ratio: 6.753918e-02	ci left: 6.098421e-02	ci right 6.526668e-02	k: 3155	n:50000
Cons ci ratio: 1.082416e-01	ci left: 2.417481e-02	ci right 2.696064e-02	k: 1277	n:50000
KS ci ratio: 3.861277e-02	ci left: 1.675899e-01	ci right 1.742083e-01	k: 8544	n:50000
C6orf174   50000 perm   13 sec   (3786 perm/sec)   p_kst 1.708800e-01   p_cons 2.554000e-02   p_joint 6.310000e-02

Joint ci ratio: 6.760145e-02	ci left: 5.126991e-02	ci right 5.487347e-02	k: 3183	n:60000
Cons ci ratio: 9.879752e-02	ci left: 2.430211e-02	ci right 2.684406e-02	k: 1533	n:60000
KS ci ratio: 3.528171e-02	ci left: 1.676144e-01	ci right 1.736509e-01	k: 10237	n:60000
C6orf174   60000 perm   16 sec   (3689 perm/sec)   p_kst 1.706167e-01   p_cons 2.555000e-02   p_joint 5.305000e-02

Outputting figure to mutsig2_images.part000000000026/C6orf174.12_2868_60000_0.17062_0.02555_0.05305.png
                gene_name: C6orf174
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.055 

Current progress: 9 percent done.
C6orf170
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.898024e-02	ci left: 8.022727e-01	ci right 8.177463e-01	k: 8101	n:10000
Cons ci ratio: 4.408155e-02	ci left: 4.317357e-01	ci right 4.512984e-01	k: 4415	n:10000
KS ci ratio: 1.835482e-02	ci left: 8.125304e-01	ci right 8.276826e-01	k: 8202	n:10000
C6orf170   10000 perm   2 sec   (4056 perm/sec)   p_kst 8.202000e-01   p_cons 4.415000e-01   p_joint 8.101000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf170.11_3902_10000_0.8202_0.4415_0.8101.png
                gene_name: C6orf170
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 11 percent done.
C6orf167
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.243827e-02	ci left: 5.837970e-01	ci right 6.031485e-01	k: 5935	n:10000
Cons ci ratio: 2.826493e-02	ci left: 6.485067e-01	ci right 6.672012e-01	k: 6579	n:10000
KS ci ratio: 5.749955e-02	ci left: 3.080829e-01	ci right 3.264237e-01	k: 3172	n:10000
C6orf167   10000 perm   2 sec   (4279 perm/sec)   p_kst 3.172000e-01   p_cons 6.579000e-01   p_joint 5.935000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf167.9_3828_10000_0.3172_0.6579_0.5935.png
                gene_name: C6orf167
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 13 percent done.
C6orf138
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.055197e-01	ci left: 3.148396e-02	ci right 3.879009e-02	k: 350	n:10000
Cons ci ratio: 1.582613e-01	ci left: 5.320919e-02	ci right 6.245049e-02	k: 577	n:10000
KS ci ratio: 1.076335e-01	ci left: 1.107625e-01	ci right 1.234615e-01	k: 1170	n:10000
C6orf138   10000 perm   2 sec   (4747 perm/sec)   p_kst 1.170000e-01   p_cons 5.770000e-02   p_joint 3.500000e-02

Joint ci ratio: 1.254441e-01	ci left: 4.362287e-02	ci right 4.950986e-02	k: 930	n:20000
Cons ci ratio: 1.151153e-01	ci left: 5.163709e-02	ci right 5.799312e-02	k: 1095	n:20000
KS ci ratio: 7.638710e-02	ci left: 1.118880e-01	ci right 1.208239e-01	k: 2326	n:20000
C6orf138   20000 perm   5 sec   (4265 perm/sec)   p_kst 1.163000e-01   p_cons 5.475000e-02   p_joint 4.650000e-02

Joint ci ratio: 1.111140e-01	ci left: 3.761587e-02	ci right 4.207381e-02	k: 1194	n:30000
Cons ci ratio: 9.457150e-02	ci left: 5.159938e-02	ci right 5.675405e-02	k: 1624	n:30000
KS ci ratio: 6.184504e-02	ci left: 1.144356e-01	ci right 1.217718e-01	k: 3542	n:30000
C6orf138   30000 perm   7 sec   (4076 perm/sec)   p_kst 1.180667e-01   p_cons 5.413333e-02   p_joint 3.980000e-02

Joint ci ratio: 1.002380e-01	ci left: 3.497617e-02	ci right 3.869146e-02	k: 1472	n:40000
Cons ci ratio: 8.143902e-02	ci left: 5.251599e-02	ci right 5.699892e-02	k: 2189	n:40000
KS ci ratio: 5.385079e-02	ci left: 1.138161e-01	ci right 1.201396e-01	k: 4678	n:40000
C6orf138   40000 perm   10 sec   (3960 perm/sec)   p_kst 1.169500e-01   p_cons 5.472500e-02   p_joint 3.680000e-02

Joint ci ratio: 9.063776e-02	ci left: 3.442323e-02	ci right 3.771091e-02	k: 1802	n:50000
Cons ci ratio: 7.254056e-02	ci left: 5.317484e-02	ci right 5.719700e-02	k: 2758	n:50000
KS ci ratio: 4.841800e-02	ci left: 1.130868e-01	ci right 1.187179e-01	k: 5794	n:50000
C6orf138   50000 perm   13 sec   (3872 perm/sec)   p_kst 1.158800e-01   p_cons 5.516000e-02   p_joint 3.604000e-02

Outputting figure to mutsig2_images.part000000000026/C6orf138.8_2553_50000_0.11588_0.05516_0.03604.png
                gene_name: C6orf138
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.038 

Current progress: 16 percent done.
C6orf204
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.776290e-02	ci left: 1.316879e-01	ci right 1.453234e-01	k: 1384	n:10000
Cons ci ratio: 1.024770e-02	ci left: 9.311281e-01	ci right 9.408160e-01	k: 9361	n:10000
KS ci ratio: 1.562625e-01	ci left: 5.455711e-02	ci right 6.390171e-02	k: 591	n:10000
C6orf204   10000 perm   2 sec   (4498 perm/sec)   p_kst 5.910000e-02   p_cons 9.361000e-01   p_joint 1.384000e-01

Joint ci ratio: 6.670328e-02	ci left: 1.423162e-01	ci right 1.521866e-01	k: 2944	n:20000
Cons ci ratio: 6.832915e-03	ci left: 9.394404e-01	ci right 9.459302e-01	k: 18855	n:20000
KS ci ratio: 1.089881e-01	ci left: 5.742979e-02	ci right 6.409861e-02	k: 1214	n:20000
C6orf204   20000 perm   5 sec   (4053 perm/sec)   p_kst 6.070000e-02   p_cons 9.427500e-01   p_joint 1.472000e-01

Joint ci ratio: 5.378330e-02	ci left: 1.463723e-01	ci right 1.544955e-01	k: 4512	n:30000
Cons ci ratio: 5.666561e-03	ci left: 9.383081e-01	ci right 9.436728e-01	k: 28231	n:30000
KS ci ratio: 8.957925e-02	ci left: 5.730604e-02	ci right 6.271289e-02	k: 1799	n:30000
C6orf204   30000 perm   8 sec   (3863 perm/sec)   p_kst 5.996667e-02   p_cons 9.410333e-01   p_joint 1.504000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf204.8_2610_30000_0.059967_0.94103_0.1504.png
                gene_name: C6orf204
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 18 percent done.
C6orf165
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.255266e-02	ci left: 5.820912e-01	ci right 6.014553e-01	k: 5918	n:10000
Cons ci ratio: 1.192926e-02	ci left: 9.096710e-01	ci right 9.206857e-01	k: 9153	n:10000
KS ci ratio: 4.869771e-02	ci left: 3.835091e-01	ci right 4.027532e-01	k: 3931	n:10000
C6orf165   10000 perm   2 sec   (5008 perm/sec)   p_kst 3.931000e-01   p_cons 9.153000e-01   p_joint 5.918000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf165.7_1917_10000_0.3931_0.9153_0.5918.png
                gene_name: C6orf165
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 20 percent done.
C5orf41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.061433e-02	ci left: 6.115078e-01	ci right 6.306216e-01	k: 6211	n:10000
Cons ci ratio: 6.139518e-02	ci left: 2.806233e-01	ci right 2.984994e-01	k: 2895	n:10000
KS ci ratio: 2.514891e-02	ci left: 6.993822e-01	ci right 7.172963e-01	k: 7084	n:10000
C5orf41   10000 perm   2 sec   (5138 perm/sec)   p_kst 7.084000e-01   p_cons 2.895000e-01   p_joint 6.211000e-01

Outputting figure to mutsig2_images.part000000000026/C5orf41.6_1984_10000_0.7084_0.2895_0.6211.png
                gene_name: C5orf41
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 22 percent done.
C6orf10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.415534e-02	ci left: 2.102365e-01	ci right 2.265279e-01	k: 2183	n:10000
Cons ci ratio: 1.343015e-01	ci left: 7.320496e-02	ci right 8.384211e-02	k: 784	n:10000
KS ci ratio: 3.110410e-02	ci left: 6.039745e-01	ci right 6.231593e-01	k: 6136	n:10000
C6orf10   10000 perm   2 sec   (5160 perm/sec)   p_kst 6.136000e-01   p_cons 7.840000e-02   p_joint 2.183000e-01

Joint ci ratio: 5.411213e-02	ci left: 2.021947e-01	ci right 2.134903e-01	k: 4156	n:20000
Cons ci ratio: 9.237437e-02	ci left: 7.877186e-02	ci right 8.645000e-02	k: 1651	n:20000
KS ci ratio: 2.212046e-02	ci left: 6.041024e-01	ci right 6.176654e-01	k: 12218	n:20000
C6orf10   20000 perm   4 sec   (4590 perm/sec)   p_kst 6.109000e-01   p_cons 8.255000e-02   p_joint 2.078000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf10.6_1784_20000_0.6109_0.08255_0.2078.png
                gene_name: C6orf10
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 24 percent done.
C6orf70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.910019e-02	ci left: 4.913511e-01	ci right 5.110482e-01	k: 5012	n:10000
Cons ci ratio: 7.944208e-02	ci left: 1.879635e-01	ci right 2.036141e-01	k: 1957	n:10000
KS ci ratio: 4.619910e-02	ci left: 4.088062e-01	ci right 4.282413e-01	k: 4185	n:10000
C6orf70   10000 perm   2 sec   (5256 perm/sec)   p_kst 4.185000e-01   p_cons 1.957000e-01   p_joint 5.012000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf70.6_2109_10000_0.4185_0.1957_0.5012.png
                gene_name: C6orf70
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 27 percent done.
C5orf36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
Cons ci ratio: 6.687871e-02	ci left: 2.470728e-01	ci right 2.642697e-01	k: 2556	n:10000
KS ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
C5orf36   10000 perm   2 sec   (4069 perm/sec)   p_kst 1.000000e-03   p_cons 2.556000e-01   p_joint 1.200000e-02

Joint ci ratio: 2.908546e-01	ci left: 7.691529e-03	ci right 1.035416e-02	k: 179	n:20000
Cons ci ratio: 5.102617e-02	ci left: 2.220022e-01	ci right 2.336770e-01	k: 4556	n:20000
KS ci ratio: 8.988600e-01	ci left: 5.334815e-04	ci right 1.422016e-03	k: 18	n:20000
C5orf36   20000 perm   5 sec   (3709 perm/sec)   p_kst 9.000000e-04   p_cons 2.278000e-01   p_joint 8.950000e-03

Joint ci ratio: 2.022506e-01	ci left: 1.111515e-02	ci right 1.364726e-02	k: 370	n:30000
Cons ci ratio: 4.120441e-02	ci left: 2.269682e-01	ci right 2.365505e-01	k: 6952	n:30000
KS ci ratio: 7.836602e-01	ci left: 5.126402e-04	ci right 1.190104e-03	k: 24	n:30000
C5orf36   30000 perm   8 sec   (3556 perm/sec)   p_kst 8.000000e-04   p_cons 2.317333e-01   p_joint 1.233333e-02

Joint ci ratio: 3.634302e-01	ci left: 2.374173e-03	ci right 3.450008e-03	k: 115	n:40000
Cons ci ratio: 3.557840e-02	ci left: 2.286655e-01	ci right 2.369734e-01	k: 9312	n:40000
KS ci ratio: 6.623027e-01	ci left: 5.887193e-04	ci right 1.187589e-03	k: 34	n:40000
C5orf36   40000 perm   12 sec   (3435 perm/sec)   p_kst 8.500000e-04   p_cons 2.328000e-01   p_joint 2.875000e-03

Joint ci ratio: 2.019369e-01	ci left: 6.724472e-03	ci right 8.253545e-03	k: 373	n:50000
Cons ci ratio: 3.026241e-02	ci left: 2.474428e-01	ci right 2.550661e-01	k: 12562	n:50000
KS ci ratio: 6.046090e-01	ci left: 5.885084e-04	ci right 1.112260e-03	k: 41	n:50000
C5orf36   50000 perm   15 sec   (3395 perm/sec)   p_kst 8.200000e-04   p_cons 2.512400e-01   p_joint 7.460000e-03

Joint ci ratio: 3.094872e-01	ci left: 2.254530e-03	ci right 3.094726e-03	k: 159	n:60000
Cons ci ratio: 2.907478e-02	ci left: 2.291246e-01	ci right 2.359013e-01	k: 13950	n:60000
KS ci ratio: 5.597666e-01	ci left: 5.899139e-04	ci right 1.060546e-03	k: 48	n:60000
C5orf36   60000 perm   18 sec   (3357 perm/sec)   p_kst 8.000000e-04   p_cons 2.325000e-01   p_joint 2.650000e-03

Joint ci ratio: 1.882362e-01	ci left: 5.577438e-03	ci right 6.749779e-03	k: 430	n:70000
Cons ci ratio: 2.695489e-02	ci left: 2.288913e-01	ci right 2.351595e-01	k: 16241	n:70000
KS ci ratio: 5.101218e-01	ci left: 6.292273e-04	ci right 1.070991e-03	k: 58	n:70000
C5orf36   70000 perm   21 sec   (3317 perm/sec)   p_kst 8.285714e-04   p_cons 2.320143e-01   p_joint 6.142857e-03

Joint ci ratio: 1.855169e-01	ci left: 5.035022e-03	ci right 6.076329e-03	k: 443	n:80000
Cons ci ratio: 2.524968e-02	ci left: 2.285932e-01	ci right 2.344513e-01	k: 18521	n:80000
KS ci ratio: 4.751648e-01	ci left: 6.491081e-04	ci right 1.063475e-03	k: 67	n:80000
C5orf36   80000 perm   24 sec   (3281 perm/sec)   p_kst 8.375000e-04   p_cons 2.315125e-01   p_joint 5.537500e-03

Joint ci ratio: 1.793857e-01	ci left: 4.804238e-03	ci right 5.761408e-03	k: 474	n:90000
Cons ci ratio: 2.380285e-02	ci left: 2.288028e-01	ci right 2.343256e-01	k: 20840	n:90000
KS ci ratio: 4.494625e-01	ci left: 6.555242e-04	ci right 1.044480e-03	k: 75	n:90000
C5orf36   90000 perm   28 sec   (3243 perm/sec)   p_kst 8.333333e-04   p_cons 2.315556e-01   p_joint 5.266667e-03

Joint ci ratio: 1.847864e-01	ci left: 4.065972e-03	ci right 4.903169e-03	k: 447	n:100000
Cons ci ratio: 2.259195e-02	ci left: 2.287790e-01	ci right 2.340166e-01	k: 23139	n:100000
KS ci ratio: 4.153321e-01	ci left: 7.058437e-04	ci right 1.084074e-03	k: 88	n:100000
C5orf36   100000 perm   31 sec   (3205 perm/sec)   p_kst 8.800000e-04   p_cons 2.313900e-01   p_joint 4.470000e-03

Joint ci ratio: 1.852399e-01	ci left: 3.678929e-03	ci right 4.438496e-03	k: 445	n:110000
Cons ci ratio: 2.154829e-02	ci left: 2.287745e-01	ci right 2.337669e-01	k: 25439	n:110000
KS ci ratio: 4.020080e-01	ci left: 6.906132e-04	ci right 1.045647e-03	k: 94	n:110000
C5orf36   110000 perm   35 sec   (3165 perm/sec)   p_kst 8.545455e-04   p_cons 2.312636e-01   p_joint 4.045455e-03

Joint ci ratio: 1.923241e-01	ci left: 3.118195e-03	ci right 3.789488e-03	k: 413	n:120000
Cons ci ratio: 2.062451e-02	ci left: 2.289913e-01	ci right 2.337717e-01	k: 27765	n:120000
KS ci ratio: 3.823838e-01	ci left: 7.081827e-04	ci right 1.050015e-03	k: 104	n:120000
C5orf36   120000 perm   38 sec   (3127 perm/sec)   p_kst 8.666667e-04   p_cons 2.313750e-01   p_joint 3.441667e-03

Joint ci ratio: 1.295623e-01	ci left: 6.539078e-03	ci right 7.452352e-03	k: 908	n:130000
Cons ci ratio: 1.978878e-02	ci left: 2.295619e-01	ci right 2.341577e-01	k: 30141	n:130000
KS ci ratio: 3.719096e-01	ci left: 6.954853e-04	ci right 1.019756e-03	k: 110	n:130000
C5orf36   130000 perm   42 sec   (3087 perm/sec)   p_kst 8.461538e-04   p_cons 2.318538e-01   p_joint 6.984615e-03

Joint ci ratio: 1.937852e-01	ci left: 2.631887e-03	ci right 3.203295e-03	k: 407	n:140000
Cons ci ratio: 1.907148e-02	ci left: 2.295987e-01	ci right 2.340267e-01	k: 32453	n:140000
KS ci ratio: 3.638107e-01	ci left: 6.782197e-04	ci right 9.859195e-04	k: 115	n:140000
C5orf36   140000 perm   46 sec   (3045 perm/sec)   p_kst 8.214286e-04   p_cons 2.318071e-01   p_joint 2.907143e-03

Joint ci ratio: 2.040926e-01	ci left: 2.202984e-03	ci right 2.709887e-03	k: 367	n:150000
Cons ci ratio: 1.843452e-02	ci left: 2.294870e-01	ci right 2.337634e-01	k: 34743	n:150000
KS ci ratio: 3.562187e-01	ci left: 6.633226e-04	ci right 9.565290e-04	k: 120	n:150000
C5orf36   150000 perm   50 sec   (3004 perm/sec)   p_kst 8.000000e-04   p_cons 2.316200e-01   p_joint 2.446667e-03

Joint ci ratio: 2.005878e-01	ci left: 2.142424e-03	ci right 2.625890e-03	k: 380	n:160000
Cons ci ratio: 1.784985e-02	ci left: 2.295409e-01	ci right 2.336813e-01	k: 37057	n:160000
KS ci ratio: 3.518889e-01	ci left: 6.389459e-04	ci right 9.171595e-04	k: 123	n:160000
C5orf36   160000 perm   54 sec   (2967 perm/sec)   p_kst 7.687500e-04   p_cons 2.316063e-01   p_joint 2.375000e-03

Joint ci ratio: 2.063827e-01	ci left: 1.899138e-03	ci right 2.341646e-03	k: 359	n:170000
Cons ci ratio: 1.733413e-02	ci left: 2.292503e-01	ci right 2.332647e-01	k: 39313	n:170000
KS ci ratio: 3.436743e-01	ci left: 6.335721e-04	ci right 9.015744e-04	k: 129	n:170000
C5orf36   170000 perm   58 sec   (2924 perm/sec)   p_kst 7.588235e-04   p_cons 2.312529e-01   p_joint 2.111765e-03

Joint ci ratio: 2.000889e-01	ci left: 1.914908e-03	ci right 2.345823e-03	k: 382	n:180000
Cons ci ratio: 1.684353e-02	ci left: 2.293536e-01	ci right 2.332550e-01	k: 41634	n:180000
KS ci ratio: 3.519041e-01	ci left: 5.679480e-04	ci right 8.152596e-04	k: 123	n:180000
C5orf36   180000 perm   62 sec   (2889 perm/sec)   p_kst 6.833333e-04   p_cons 2.313000e-01   p_joint 2.122222e-03

Joint ci ratio: 1.972814e-01	ci left: 1.869134e-03	ci right 2.283136e-03	k: 393	n:190000
Cons ci ratio: 1.638727e-02	ci left: 2.295577e-01	ci right 2.333558e-01	k: 43976	n:190000
KS ci ratio: 3.463647e-01	ci left: 5.572620e-04	ci right 7.952438e-04	k: 127	n:190000
C5orf36   190000 perm   67 sec   (2855 perm/sec)   p_kst 6.684211e-04   p_cons 2.314526e-01   p_joint 2.068421e-03

Joint ci ratio: 1.938704e-01	ci left: 1.842247e-03	ci right 2.242406e-03	k: 407	n:200000
Cons ci ratio: 1.598730e-02	ci left: 2.292739e-01	ci right 2.329739e-01	k: 46224	n:200000
KS ci ratio: 3.372652e-01	ci left: 5.613954e-04	ci right 7.934739e-04	k: 134	n:200000
C5orf36   200000 perm   71 sec   (2822 perm/sec)   p_kst 6.700000e-04   p_cons 2.311200e-01   p_joint 2.035000e-03

Joint ci ratio: 1.915421e-01	ci left: 1.799838e-03	ci right 2.185544e-03	k: 417	n:210000
Cons ci ratio: 1.560394e-02	ci left: 2.292747e-01	ci right 2.328851e-01	k: 48526	n:210000
KS ci ratio: 3.276945e-01	ci left: 5.695786e-04	ci right 7.969522e-04	k: 142	n:210000
C5orf36   210000 perm   75 sec   (2789 perm/sec)   p_kst 6.761905e-04   p_cons 2.310762e-01   p_joint 1.985714e-03

Joint ci ratio: 1.901881e-01	ci left: 1.743992e-03	ci right 2.114782e-03	k: 423	n:220000
Cons ci ratio: 1.523891e-02	ci left: 2.294622e-01	ci right 2.329903e-01	k: 50869	n:220000
KS ci ratio: 3.232074e-01	ci left: 5.603848e-04	ci right 7.803900e-04	k: 146	n:220000
C5orf36   220000 perm   80 sec   (2757 perm/sec)   p_kst 6.636364e-04   p_cons 2.312227e-01   p_joint 1.922727e-03

Joint ci ratio: 1.893036e-01	ci left: 1.684727e-03	ci right 2.041058e-03	k: 427	n:230000
Cons ci ratio: 1.490837e-02	ci left: 2.293958e-01	ci right 2.328457e-01	k: 53157	n:230000
KS ci ratio: 3.147552e-01	ci left: 5.680191e-04	ci right 7.840172e-04	k: 154	n:230000
C5orf36   230000 perm   84 sec   (2726 perm/sec)   p_kst 6.695652e-04   p_cons 2.311174e-01   p_joint 1.856522e-03

Joint ci ratio: 1.860725e-01	ci left: 1.674092e-03	ci right 2.021448e-03	k: 442	n:240000
Cons ci ratio: 1.459314e-02	ci left: 2.294646e-01	ci right 2.328419e-01	k: 55476	n:240000
KS ci ratio: 3.078797e-01	ci left: 5.712402e-04	ci right 7.827874e-04	k: 161	n:240000
C5orf36   240000 perm   89 sec   (2696 perm/sec)   p_kst 6.708333e-04   p_cons 2.311500e-01   p_joint 1.841667e-03

Joint ci ratio: 1.822059e-01	ci left: 1.679626e-03	ci right 2.020089e-03	k: 461	n:250000
Cons ci ratio: 1.431692e-02	ci left: 2.290378e-01	ci right 2.323445e-01	k: 57672	n:250000
KS ci ratio: 3.005474e-01	ci left: 5.779489e-04	ci right 7.859103e-04	k: 169	n:250000
C5orf36   250000 perm   94 sec   (2666 perm/sec)   p_kst 6.760000e-04   p_cons 2.306880e-01   p_joint 1.844000e-03

Joint ci ratio: 1.899921e-01	ci left: 1.479329e-03	ci right 1.793486e-03	k: 424	n:260000
Cons ci ratio: 1.403143e-02	ci left: 2.292583e-01	ci right 2.325016e-01	k: 60028	n:260000
KS ci ratio: 2.937153e-01	ci left: 5.841965e-04	ci right 7.887385e-04	k: 177	n:260000
C5orf36   260000 perm   99 sec   (2636 perm/sec)   p_kst 6.807692e-04   p_cons 2.308769e-01   p_joint 1.630769e-03

Joint ci ratio: 1.958544e-01	ci left: 1.336408e-03	ci right 1.630015e-03	k: 399	n:270000
Cons ci ratio: 1.377529e-02	ci left: 2.291305e-01	ci right 2.323124e-01	k: 62294	n:270000
KS ci ratio: 2.928969e-01	ci left: 5.659900e-04	ci right 7.635026e-04	k: 178	n:270000
C5orf36   270000 perm   104 sec   (2607 perm/sec)   p_kst 6.592593e-04   p_cons 2.307185e-01   p_joint 1.477778e-03

Joint ci ratio: 1.918199e-01	ci left: 1.346448e-03	ci right 1.635457e-03	k: 416	n:280000
Cons ci ratio: 1.351826e-02	ci left: 2.293900e-01	ci right 2.325156e-01	k: 64666	n:280000
KS ci ratio: 2.857989e-01	ci left: 5.755871e-04	ci right 7.707030e-04	k: 187	n:280000
C5orf36   280000 perm   109 sec   (2578 perm/sec)   p_kst 6.678571e-04   p_cons 2.309500e-01   p_joint 1.485714e-03

Joint ci ratio: 1.958644e-01	ci left: 1.244236e-03	ci right 1.517608e-03	k: 399	n:290000
Cons ci ratio: 1.327651e-02	ci left: 2.295943e-01	ci right 2.326663e-01	k: 67027	n:290000
KS ci ratio: 2.813450e-01	ci left: 5.749577e-04	ci right 7.662842e-04	k: 193	n:290000
C5orf36   290000 perm   114 sec   (2550 perm/sec)   p_kst 6.655172e-04   p_cons 2.311276e-01   p_joint 1.375862e-03

Joint ci ratio: 1.946545e-01	ci left: 1.218612e-03	ci right 1.484504e-03	k: 404	n:300000
Cons ci ratio: 1.304544e-02	ci left: 2.298353e-01	ci right 2.328566e-01	k: 69403	n:300000
KS ci ratio: 2.750365e-01	ci left: 5.837005e-04	ci right 7.728280e-04	k: 202	n:300000
C5orf36   300000 perm   119 sec   (2523 perm/sec)   p_kst 6.733333e-04   p_cons 2.313433e-01   p_joint 1.346667e-03

Joint ci ratio: 1.918338e-01	ci left: 1.216139e-03	ci right 1.477197e-03	k: 416	n:310000
Cons ci ratio: 1.282906e-02	ci left: 2.299775e-01	ci right 2.329501e-01	k: 71753	n:310000
KS ci ratio: 2.697716e-01	ci left: 5.889158e-04	ci right 7.754624e-04	k: 210	n:310000
C5orf36   310000 perm   124 sec   (2496 perm/sec)   p_kst 6.774194e-04   p_cons 2.314613e-01   p_joint 1.341935e-03

Joint ci ratio: 1.562712e-01	ci left: 1.809122e-03	ci right 2.118758e-03	k: 627	n:320000
Cons ci ratio: 1.262054e-02	ci left: 2.301829e-01	ci right 2.331095e-01	k: 74126	n:320000
KS ci ratio: 2.678756e-01	ci left: 5.792550e-04	ci right 7.612351e-04	k: 213	n:320000
C5orf36   320000 perm   130 sec   (2468 perm/sec)   p_kst 6.656250e-04   p_cons 2.316438e-01   p_joint 1.959375e-03

Joint ci ratio: 1.626258e-01	ci left: 1.614634e-03	ci right 1.903319e-03	k: 579	n:330000
Cons ci ratio: 1.242854e-02	ci left: 2.301857e-01	ci right 2.330675e-01	k: 76436	n:330000
KS ci ratio: 2.630043e-01	ci left: 5.843315e-04	ci right 7.640189e-04	k: 221	n:330000
C5orf36   330000 perm   135 sec   (2439 perm/sec)   p_kst 6.696970e-04   p_cons 2.316242e-01   p_joint 1.754545e-03

Joint ci ratio: 1.620711e-01	ci left: 1.578429e-03	ci right 1.859584e-03	k: 583	n:340000
Cons ci ratio: 1.224726e-02	ci left: 2.301241e-01	ci right 2.329628e-01	k: 78724	n:340000
KS ci ratio: 2.606675e-01	ci left: 5.781376e-04	ci right 7.540832e-04	k: 225	n:340000
C5orf36   340000 perm   141 sec   (2413 perm/sec)   p_kst 6.617647e-04   p_cons 2.315412e-01   p_joint 1.714706e-03

Joint ci ratio: 1.613846e-01	ci left: 1.547037e-03	ci right 1.821320e-03	k: 588	n:350000
Cons ci ratio: 1.207117e-02	ci left: 2.301405e-01	ci right 2.329382e-01	k: 81038	n:350000
KS ci ratio: 2.567219e-01	ci left: 5.803227e-04	ci right 7.538319e-04	k: 232	n:350000
C5orf36   350000 perm   147 sec   (2387 perm/sec)   p_kst 6.628571e-04   p_cons 2.315371e-01   p_joint 1.680000e-03

Joint ci ratio: 1.352563e-01	ci left: 2.170302e-03	ci right 2.487793e-03	k: 837	n:360000
Cons ci ratio: 1.190423e-02	ci left: 2.301035e-01	ci right 2.328619e-01	k: 83333	n:360000
KS ci ratio: 2.540115e-01	ci left: 5.772025e-04	ci right 7.476682e-04	k: 237	n:360000
C5orf36   360000 perm   153 sec   (2361 perm/sec)   p_kst 6.583333e-04   p_cons 2.314806e-01   p_joint 2.325000e-03

Joint ci ratio: 1.339060e-01	ci left: 2.156043e-03	ci right 2.468049e-03	k: 854	n:370000
Cons ci ratio: 1.174020e-02	ci left: 2.301848e-01	ci right 2.329059e-01	k: 85671	n:370000
KS ci ratio: 2.519044e-01	ci left: 5.717277e-04	ci right 7.389560e-04	k: 241	n:370000
C5orf36   370000 perm   158 sec   (2336 perm/sec)   p_kst 6.513514e-04   p_cons 2.315432e-01   p_joint 2.308108e-03

Joint ci ratio: 1.345424e-01	ci left: 2.078954e-03	ci right 2.381348e-03	k: 846	n:380000
Cons ci ratio: 1.158516e-02	ci left: 2.301885e-01	ci right 2.328734e-01	k: 87981	n:380000
KS ci ratio: 2.483382e-01	ci left: 5.739488e-04	ci right 7.390830e-04	k: 248	n:380000
C5orf36   380000 perm   165 sec   (2310 perm/sec)   p_kst 6.526316e-04   p_cons 2.315289e-01   p_joint 2.226316e-03

Joint ci ratio: 1.333679e-01	ci left: 2.062819e-03	ci right 2.360039e-03	k: 861	n:390000
Cons ci ratio: 1.143322e-02	ci left: 2.302819e-01	ci right 2.329324e-01	k: 90326	n:390000
KS ci ratio: 2.425604e-01	ci left: 5.881097e-04	ci right 7.527892e-04	k: 260	n:390000
C5orf36   390000 perm   171 sec   (2287 perm/sec)   p_kst 6.666667e-04   p_cons 2.316051e-01   p_joint 2.207692e-03

Joint ci ratio: 1.317727e-01	ci left: 2.062007e-03	ci right 2.355278e-03	k: 882	n:400000
Cons ci ratio: 1.128782e-02	ci left: 2.303483e-01	ci right 2.329656e-01	k: 92662	n:400000
KS ci ratio: 2.398197e-01	ci left: 5.875005e-04	ci right 7.498743e-04	k: 266	n:400000
C5orf36   400000 perm   177 sec   (2264 perm/sec)   p_kst 6.650000e-04   p_cons 2.316550e-01   p_joint 2.205000e-03

Joint ci ratio: 1.327592e-01	ci left: 1.981051e-03	ci right 2.265083e-03	k: 869	n:410000
Cons ci ratio: 1.115081e-02	ci left: 2.303167e-01	ci right 2.329017e-01	k: 94959	n:410000
KS ci ratio: 2.389279e-01	ci left: 5.777564e-04	ci right 7.367553e-04	k: 268	n:410000
C5orf36   410000 perm   183 sec   (2241 perm/sec)   p_kst 6.536585e-04   p_cons 2.316073e-01   p_joint 2.119512e-03

Joint ci ratio: 1.378577e-01	ci left: 1.788946e-03	ci right 2.056095e-03	k: 806	n:420000
Cons ci ratio: 1.101970e-02	ci left: 2.302536e-01	ci right 2.328073e-01	k: 97242	n:420000
KS ci ratio: 2.346060e-01	ci left: 5.863978e-04	ci right 7.444323e-04	k: 278	n:420000
C5orf36   420000 perm   189 sec   (2220 perm/sec)   p_kst 6.619048e-04   p_cons 2.315286e-01   p_joint 1.919048e-03

Joint ci ratio: 1.368452e-01	ci left: 1.774290e-03	ci right 2.037145e-03	k: 818	n:430000
Cons ci ratio: 1.089276e-02	ci left: 2.302051e-01	ci right 2.327287e-01	k: 99530	n:430000
KS ci ratio: 2.325321e-01	ci left: 5.837081e-04	ci right 7.394272e-04	k: 283	n:430000
C5orf36   430000 perm   196 sec   (2198 perm/sec)   p_kst 6.581395e-04   p_cons 2.314651e-01   p_joint 1.902326e-03

Joint ci ratio: 1.353659e-01	ci left: 1.773481e-03	ci right 2.033148e-03	k: 836	n:440000
Cons ci ratio: 1.077051e-02	ci left: 2.301455e-01	ci right 2.326399e-01	k: 101812	n:440000
KS ci ratio: 2.305122e-01	ci left: 5.811465e-04	ci right 7.346437e-04	k: 288	n:440000
C5orf36   440000 perm   202 sec   (2176 perm/sec)   p_kst 6.545455e-04   p_cons 2.313909e-01   p_joint 1.900000e-03

Joint ci ratio: 1.351264e-01	ci left: 1.740510e-03	ci right 1.994861e-03	k: 839	n:450000
Cons ci ratio: 1.065070e-02	ci left: 2.301418e-01	ci right 2.326083e-01	k: 104118	n:450000
KS ci ratio: 2.285441e-01	ci left: 5.787043e-04	ci right 7.300673e-04	k: 293	n:450000
C5orf36   450000 perm   209 sec   (2157 perm/sec)   p_kst 6.511111e-04   p_cons 2.313733e-01   p_joint 1.864444e-03

Joint ci ratio: 1.337797e-01	ci left: 1.738386e-03	ci right 1.989694e-03	k: 856	n:460000
Cons ci ratio: 1.053576e-02	ci left: 2.301059e-01	ci right 2.325453e-01	k: 106409	n:460000
KS ci ratio: 2.270057e-01	ci left: 5.743231e-04	ci right 7.233875e-04	k: 297	n:460000
C5orf36   460000 perm   215 sec   (2137 perm/sec)   p_kst 6.456522e-04   p_cons 2.313239e-01   p_joint 1.860870e-03

Joint ci ratio: 1.327009e-01	ci left: 1.730193e-03	ci right 1.978140e-03	k: 870	n:470000
Cons ci ratio: 1.042221e-02	ci left: 2.301482e-01	ci right 2.325615e-01	k: 108736	n:470000
KS ci ratio: 2.247545e-01	ci left: 5.741471e-04	ci right 7.214834e-04	k: 303	n:470000
C5orf36   470000 perm   222 sec   (2115 perm/sec)   p_kst 6.446809e-04   p_cons 2.313532e-01   p_joint 1.851064e-03

Joint ci ratio: 1.353767e-01	ci left: 1.625683e-03	ci right 1.863729e-03	k: 836	n:480000
Cons ci ratio: 1.031499e-02	ci left: 2.300952e-01	ci right 2.324830e-01	k: 111018	n:480000
KS ci ratio: 2.229290e-01	ci left: 5.720183e-04	ci right 7.174523e-04	k: 308	n:480000
C5orf36   480000 perm   229 sec   (2096 perm/sec)   p_kst 6.416667e-04   p_cons 2.312875e-01   p_joint 1.741667e-03

Joint ci ratio: 1.342590e-01	ci left: 1.620113e-03	ci right 1.855229e-03	k: 850	n:490000
Cons ci ratio: 1.020707e-02	ci left: 2.301810e-01	ci right 2.325446e-01	k: 113367	n:490000
KS ci ratio: 2.218554e-01	ci left: 5.661257e-04	ci right 7.092737e-04	k: 311	n:490000
C5orf36   490000 perm   236 sec   (2076 perm/sec)   p_kst 6.346939e-04   p_cons 2.313612e-01   p_joint 1.734694e-03

Joint ci ratio: 1.326320e-01	ci left: 1.628309e-03	ci right 1.861525e-03	k: 871	n:500000
Cons ci ratio: 1.010424e-02	ci left: 2.302017e-01	ci right 2.325414e-01	k: 115685	n:500000
KS ci ratio: 2.190643e-01	ci left: 5.699198e-04	ci right 7.119701e-04	k: 319	n:500000
C5orf36   500000 perm   243 sec   (2057 perm/sec)   p_kst 6.380000e-04   p_cons 2.313700e-01   p_joint 1.742000e-03

Joint ci ratio: 1.312839e-01	ci left: 1.630511e-03	ci right 1.861483e-03	k: 889	n:510000
Cons ci ratio: 1.000898e-02	ci left: 2.300611e-01	ci right 2.323773e-01	k: 117921	n:510000
KS ci ratio: 2.163760e-01	ci left: 5.735760e-04	ci right 7.145501e-04	k: 327	n:510000
C5orf36   510000 perm   250 sec   (2038 perm/sec)   p_kst 6.411765e-04   p_cons 2.312176e-01   p_joint 1.743137e-03

Joint ci ratio: 1.124212e-01	ci left: 2.201522e-03	ci right 2.465611e-03	k: 1212	n:520000
Cons ci ratio: 9.911207e-03	ci left: 2.301103e-01	ci right 2.324042e-01	k: 120253	n:520000
KS ci ratio: 2.134666e-01	ci left: 5.789220e-04	ci right 7.190464e-04	k: 336	n:520000
C5orf36   520000 perm   257 sec   (2020 perm/sec)   p_kst 6.461538e-04   p_cons 2.312558e-01   p_joint 2.330769e-03

Joint ci ratio: 1.131269e-01	ci left: 2.132476e-03	ci right 2.389995e-03	k: 1197	n:530000
Cons ci ratio: 9.815883e-03	ci left: 2.301710e-01	ci right 2.324433e-01	k: 122592	n:530000
KS ci ratio: 2.115914e-01	ci left: 5.787171e-04	ci right 7.174019e-04	k: 342	n:530000
C5orf36   530000 perm   265 sec   (2002 perm/sec)   p_kst 6.452830e-04   p_cons 2.313057e-01   p_joint 2.258491e-03

Joint ci ratio: 1.125656e-01	ci left: 2.114579e-03	ci right 2.368586e-03	k: 1209	n:540000
Cons ci ratio: 9.729084e-03	ci left: 2.300169e-01	ci right 2.322675e-01	k: 124816	n:540000
KS ci ratio: 2.106728e-01	ci left: 5.732618e-04	ci right 7.099658e-04	k: 345	n:540000
C5orf36   540000 perm   273 sec   (1982 perm/sec)   p_kst 6.388889e-04   p_cons 2.311407e-01   p_joint 2.238889e-03

Joint ci ratio: 1.138963e-01	ci left: 2.026660e-03	ci right 2.273177e-03	k: 1181	n:550000
Cons ci ratio: 9.640401e-03	ci left: 2.300210e-01	ci right 2.322510e-01	k: 127124	n:550000
KS ci ratio: 2.085734e-01	ci left: 5.748981e-04	ci right 7.104517e-04	k: 352	n:550000
C5orf36   550000 perm   280 sec   (1964 perm/sec)   p_kst 6.400000e-04   p_cons 2.311345e-01   p_joint 2.147273e-03

Joint ci ratio: 1.140437e-01	ci left: 1.985263e-03	ci right 2.227077e-03	k: 1178	n:560000
Cons ci ratio: 9.553092e-03	ci left: 2.300624e-01	ci right 2.322725e-01	k: 129453	n:560000
KS ci ratio: 2.071120e-01	ci left: 5.730959e-04	ci right 7.071577e-04	k: 357	n:560000
C5orf36   560000 perm   288 sec   (1946 perm/sec)   p_kst 6.375000e-04   p_cons 2.311661e-01   p_joint 2.103571e-03

Joint ci ratio: 1.139006e-01	ci left: 1.955545e-03	ci right 2.193421e-03	k: 1181	n:570000
Cons ci ratio: 9.468393e-03	ci left: 2.300920e-01	ci right 2.322827e-01	k: 131776	n:570000
KS ci ratio: 2.048357e-01	ci left: 5.763529e-04	ci right 7.095093e-04	k: 365	n:570000
C5orf36   570000 perm   296 sec   (1927 perm/sec)   p_kst 6.403509e-04   p_cons 2.311860e-01   p_joint 2.071930e-03

Joint ci ratio: 1.127613e-01	ci left: 1.962035e-03	ci right 2.198155e-03	k: 1205	n:580000
Cons ci ratio: 9.386681e-03	ci left: 2.300914e-01	ci right 2.322630e-01	k: 134082	n:580000
KS ci ratio: 2.026328e-01	ci left: 5.795053e-04	ci right 7.117721e-04	k: 373	n:580000
C5orf36   580000 perm   304 sec   (1910 perm/sec)   p_kst 6.431034e-04   p_cons 2.311759e-01   p_joint 2.077586e-03

Joint ci ratio: 1.134249e-01	ci left: 1.905720e-03	ci right 2.136502e-03	k: 1191	n:590000
Cons ci ratio: 9.306695e-03	ci left: 2.301044e-01	ci right 2.322576e-01	k: 136396	n:590000
KS ci ratio: 2.012920e-01	ci left: 5.777292e-04	ci right 7.086108e-04	k: 378	n:590000
C5orf36   590000 perm   312 sec   (1893 perm/sec)   p_kst 6.406780e-04   p_cons 2.311797e-01   p_joint 2.018644e-03

Joint ci ratio: 1.137620e-01	ci left: 1.862620e-03	ci right 2.088898e-03	k: 1184	n:600000
Cons ci ratio: 9.229368e-03	ci left: 2.300921e-01	ci right 2.322272e-01	k: 138695	n:600000
KS ci ratio: 2.002385e-01	ci left: 5.744318e-04	ci right 7.038021e-04	k: 382	n:600000
C5orf36   600000 perm   320 sec   (1877 perm/sec)   p_kst 6.366667e-04   p_cons 2.311583e-01   p_joint 1.973333e-03

Joint ci ratio: 1.153849e-01	ci left: 1.779533e-03	ci right 1.999011e-03	k: 1151	n:610000
Cons ci ratio: 9.154654e-03	ci left: 2.300524e-01	ci right 2.321698e-01	k: 140977	n:610000
KS ci ratio: 1.989444e-01	ci left: 5.728019e-04	ci right 7.008703e-04	k: 387	n:610000
C5orf36   610000 perm   328 sec   (1862 perm/sec)   p_kst 6.344262e-04   p_cons 2.311098e-01   p_joint 1.886885e-03

Joint ci ratio: 1.142010e-01	ci left: 1.788429e-03	ci right 2.006589e-03	k: 1175	n:620000
Cons ci ratio: 9.081891e-03	ci left: 2.300077e-01	ci right 2.321077e-01	k: 143255	n:620000
KS ci ratio: 1.979271e-01	ci left: 5.696942e-04	ci right 6.963378e-04	k: 391	n:620000
C5orf36   620000 perm   336 sec   (1847 perm/sec)   p_kst 6.306452e-04   p_cons 2.310565e-01   p_joint 1.895161e-03

Joint ci ratio: 1.135755e-01	ci left: 1.780088e-03	ci right 1.995962e-03	k: 1188	n:630000
Cons ci ratio: 9.010433e-03	ci left: 2.299803e-01	ci right 2.320634e-01	k: 145543	n:630000
KS ci ratio: 1.964296e-01	ci left: 5.697050e-04	ci right 6.952782e-04	k: 397	n:630000
C5orf36   630000 perm   344 sec   (1833 perm/sec)   p_kst 6.301587e-04   p_cons 2.310206e-01   p_joint 1.885714e-03

Joint ci ratio: 1.132437e-01	ci left: 1.762901e-03	ci right 1.976024e-03	k: 1195	n:640000
Cons ci ratio: 8.939299e-03	ci left: 2.300069e-01	ci right 2.320737e-01	k: 147865	n:640000
KS ci ratio: 1.952075e-01	ci left: 5.682328e-04	ci right 6.926096e-04	k: 402	n:640000
C5orf36   640000 perm   352 sec   (1819 perm/sec)   p_kst 6.281250e-04   p_cons 2.310391e-01   p_joint 1.867187e-03

Joint ci ratio: 1.125871e-01	ci left: 1.756709e-03	ci right 1.967770e-03	k: 1209	n:650000
Cons ci ratio: 8.871437e-03	ci left: 2.299681e-01	ci right 2.320189e-01	k: 150145	n:650000
KS ci ratio: 1.940079e-01	ci left: 5.668083e-04	ci right 6.900207e-04	k: 407	n:650000
C5orf36   650000 perm   360 sec   (1805 perm/sec)   p_kst 6.261538e-04   p_cons 2.309923e-01   p_joint 1.860000e-03

Joint ci ratio: 1.059523e-01	ci left: 1.960012e-03	ci right 2.180758e-03	k: 1365	n:660000
Cons ci ratio: 8.804608e-03	ci left: 2.299503e-01	ci right 2.319854e-01	k: 152438	n:660000
KS ci ratio: 1.803680e-01	ci left: 6.506545e-04	ci right 7.810652e-04	k: 471	n:660000
C5orf36   660000 perm   369 sec   (1791 perm/sec)   p_kst 7.136364e-04   p_cons 2.309667e-01   p_joint 2.068182e-03

Joint ci ratio: 1.063840e-01	ci left: 1.914774e-03	ci right 2.131359e-03	k: 1354	n:670000
Cons ci ratio: 8.736625e-03	ci left: 2.300404e-01	ci right 2.320604e-01	k: 154803	n:670000
KS ci ratio: 1.786723e-01	ci left: 6.537725e-04	ci right 7.834432e-04	k: 480	n:670000
C5orf36   670000 perm   377 sec   (1778 perm/sec)   p_kst 7.164179e-04   p_cons 2.310493e-01   p_joint 2.020896e-03

Joint ci ratio: 1.069406e-01	ci left: 1.866574e-03	ci right 2.078881e-03	k: 1340	n:680000
Cons ci ratio: 8.671412e-03	ci left: 2.300779e-01	ci right 2.320832e-01	k: 157134	n:680000
KS ci ratio: 1.773862e-01	ci left: 6.539936e-04	ci right 7.826743e-04	k: 487	n:680000
C5orf36   680000 perm   385 sec   (1764 perm/sec)   p_kst 7.161765e-04   p_cons 2.310794e-01   p_joint 1.970588e-03

Joint ci ratio: 1.061129e-01	ci left: 1.869146e-03	ci right 2.079997e-03	k: 1361	n:690000
Cons ci ratio: 8.606233e-03	ci left: 2.301723e-01	ci right 2.321632e-01	k: 159505	n:690000
KS ci ratio: 1.755959e-01	ci left: 6.583681e-04	ci right 7.864634e-04	k: 497	n:690000
C5orf36   690000 perm   394 sec   (1750 perm/sec)   p_kst 7.202899e-04   p_cons 2.311667e-01   p_joint 1.972464e-03

Joint ci ratio: 1.054187e-01	ci left: 1.867478e-03	ci right 2.076677e-03	k: 1379	n:700000
Cons ci ratio: 8.543533e-03	ci left: 2.302213e-01	ci right 2.321981e-01	k: 161846	n:700000
KS ci ratio: 1.747212e-01	ci left: 6.557925e-04	ci right 7.826840e-04	k: 502	n:700000
C5orf36   700000 perm   403 sec   (1737 perm/sec)   p_kst 7.171429e-04   p_cons 2.312086e-01   p_joint 1.970000e-03

Joint ci ratio: 1.067856e-01	ci left: 1.793185e-03	ci right 1.996829e-03	k: 1344	n:710000
Cons ci ratio: 8.483157e-03	ci left: 2.302282e-01	ci right 2.321909e-01	k: 164158	n:710000
KS ci ratio: 1.733481e-01	ci left: 6.573328e-04	ci right 7.834182e-04	k: 510	n:710000
C5orf36   710000 perm   412 sec   (1724 perm/sec)   p_kst 7.183099e-04   p_cons 2.312085e-01   p_joint 1.892958e-03

Joint ci ratio: 1.059227e-01	ci left: 1.798022e-03	ci right 2.000463e-03	k: 1366	n:720000
Cons ci ratio: 8.424274e-03	ci left: 2.302252e-01	ci right 2.321742e-01	k: 166463	n:720000
KS ci ratio: 1.721728e-01	ci left: 6.575051e-04	ci right 7.826795e-04	k: 517	n:720000
C5orf36   720000 perm   422 sec   (1707 perm/sec)   p_kst 7.180556e-04   p_cons 2.311986e-01   p_joint 1.897222e-03

Joint ci ratio: 1.052702e-01	ci left: 1.796064e-03	ci right 1.996962e-03	k: 1383	n:730000
Cons ci ratio: 8.368761e-03	ci left: 2.301307e-01	ci right 2.320660e-01	k: 168701	n:730000
KS ci ratio: 1.710212e-01	ci left: 6.576754e-04	ci right 7.819584e-04	k: 524	n:730000
C5orf36   730000 perm   431 sec   (1694 perm/sec)   p_kst 7.178082e-04   p_cons 2.310973e-01   p_joint 1.894521e-03

Joint ci ratio: 1.047047e-01	ci left: 1.791531e-03	ci right 1.990779e-03	k: 1398	n:740000
Cons ci ratio: 8.310853e-03	ci left: 2.301872e-01	ci right 2.321095e-01	k: 171049	n:740000
KS ci ratio: 1.703737e-01	ci left: 6.539622e-04	ci right 7.770276e-04	k: 528	n:740000
C5orf36   740000 perm   440 sec   (1682 perm/sec)   p_kst 7.135135e-04   p_cons 2.311473e-01   p_joint 1.889189e-03

Joint ci ratio: 1.077177e-01	ci left: 1.667698e-03	ci right 1.858850e-03	k: 1321	n:750000
Cons ci ratio: 8.252367e-03	ci left: 2.303181e-01	ci right 2.322280e-01	k: 173454	n:750000
KS ci ratio: 1.694158e-01	ci left: 6.529025e-04	ci right 7.750072e-04	k: 534	n:750000
C5orf36   750000 perm   449 sec   (1670 perm/sec)   p_kst 7.120000e-04   p_cons 2.312720e-01   p_joint 1.761333e-03

Joint ci ratio: 1.078006e-01	ci left: 1.643193e-03	ci right 1.831690e-03	k: 1319	n:760000
Cons ci ratio: 8.197857e-03	ci left: 2.303261e-01	ci right 2.322233e-01	k: 175768	n:760000
KS ci ratio: 1.675467e-01	ci left: 6.594356e-04	ci right 7.812641e-04	k: 546	n:760000
C5orf36   760000 perm   458 sec   (1659 perm/sec)   p_kst 7.184211e-04   p_cons 2.312737e-01   p_joint 1.735526e-03

Joint ci ratio: 1.084623e-01	ci left: 1.601634e-03	ci right 1.786563e-03	k: 1303	n:770000
Cons ci ratio: 8.143193e-03	ci left: 2.303871e-01	ci right 2.322721e-01	k: 178123	n:770000
KS ci ratio: 1.635565e-01	ci left: 6.844846e-04	ci right 8.076331e-04	k: 573	n:770000
C5orf36   770000 perm   468 sec   (1647 perm/sec)   p_kst 7.441558e-04   p_cons 2.313286e-01   p_joint 1.692208e-03

Joint ci ratio: 1.079670e-01	ci left: 1.596068e-03	ci right 1.779459e-03	k: 1315	n:780000
Cons ci ratio: 8.090250e-03	ci left: 2.304184e-01	ci right 2.322913e-01	k: 180456	n:780000
KS ci ratio: 1.624285e-01	ci left: 6.855472e-04	ci right 8.079532e-04	k: 581	n:780000
C5orf36   780000 perm   477 sec   (1635 perm/sec)   p_kst 7.448718e-04   p_cons 2.313538e-01   p_joint 1.685897e-03

Joint ci ratio: 1.103015e-01	ci left: 1.508141e-03	ci right 1.685419e-03	k: 1260	n:790000
Cons ci ratio: 8.037497e-03	ci left: 2.304856e-01	ci right 2.323468e-01	k: 182818	n:790000
KS ci ratio: 1.618735e-01	ci left: 6.817271e-04	ci right 8.029947e-04	k: 585	n:790000
C5orf36   790000 perm   486 sec   (1624 perm/sec)   p_kst 7.405063e-04   p_cons 2.314152e-01   p_joint 1.594937e-03

Joint ci ratio: 1.094796e-01	ci left: 1.512386e-03	ci right 1.688754e-03	k: 1279	n:800000
Cons ci ratio: 7.984612e-03	ci left: 2.306023e-01	ci right 2.324522e-01	k: 185221	n:800000
KS ci ratio: 1.609153e-01	ci left: 6.816021e-04	ci right 8.020604e-04	k: 592	n:800000
C5orf36   800000 perm   496 sec   (1613 perm/sec)   p_kst 7.400000e-04   p_cons 2.315262e-01   p_joint 1.598750e-03

Joint ci ratio: 1.088437e-01	ci left: 1.511728e-03	ci right 1.686929e-03	k: 1294	n:810000
Cons ci ratio: 7.936253e-03	ci left: 2.305596e-01	ci right 2.323979e-01	k: 187497	n:810000
KS ci ratio: 1.599739e-01	ci left: 6.814823e-04	ci right 8.011471e-04	k: 599	n:810000
C5orf36   810000 perm   506 sec   (1600 perm/sec)   p_kst 7.395062e-04   p_cons 2.314778e-01   p_joint 1.597531e-03

Joint ci ratio: 1.240721e-01	ci left: 1.140404e-03	ci right 1.292423e-03	k: 996	n:820000
Cons ci ratio: 7.684634e-03	ci left: 2.399626e-01	ci right 2.418149e-01	k: 197528	n:820000
KS ci ratio: 1.591802e-01	ci left: 6.801964e-04	ci right 7.989861e-04	k: 605	n:820000
C5orf36   820000 perm   516 sec   (1589 perm/sec)   p_kst 7.378049e-04   p_cons 2.408878e-01   p_joint 1.214634e-03

Joint ci ratio: 1.243857e-01	ci left: 1.120827e-03	ci right 1.270641e-03	k: 991	n:830000
Cons ci ratio: 7.637569e-03	ci left: 2.399984e-01	ci right 2.418396e-01	k: 199962	n:830000
KS ci ratio: 1.582687e-01	ci left: 6.801000e-04	ci right 7.981282e-04	k: 612	n:830000
C5orf36   830000 perm   527 sec   (1576 perm/sec)   p_kst 7.373494e-04   p_cons 2.409181e-01   p_joint 1.193976e-03

Joint ci ratio: 1.252106e-01	ci left: 1.092489e-03	ci right 1.239557e-03	k: 978	n:840000
Cons ci ratio: 7.591778e-03	ci left: 2.400132e-01	ci right 2.418434e-01	k: 202379	n:840000
KS ci ratio: 1.574999e-01	ci left: 6.788642e-04	ci right 7.960515e-04	k: 618	n:840000
C5orf36   840000 perm   537 sec   (1564 perm/sec)   p_kst 7.357143e-04   p_cons 2.409274e-01   p_joint 1.164286e-03

Joint ci ratio: 1.244502e-01	ci left: 1.093313e-03	ci right 1.239532e-03	k: 990	n:850000
Cons ci ratio: 7.547092e-03	ci left: 2.400135e-01	ci right 2.418329e-01	k: 204784	n:850000
KS ci ratio: 1.561186e-01	ci left: 6.833110e-04	ci right 8.001346e-04	k: 629	n:850000
C5orf36   850000 perm   547 sec   (1553 perm/sec)   p_kst 7.400000e-04   p_cons 2.409224e-01   p_joint 1.164706e-03

Joint ci ratio: 1.238891e-01	ci left: 1.090740e-03	ci right 1.235909e-03	k: 999	n:860000
Cons ci ratio: 7.503044e-03	ci left: 2.400209e-01	ci right 2.418297e-01	k: 207195	n:860000
KS ci ratio: 1.551366e-01	ci left: 6.843057e-04	ci right 8.004950e-04	k: 637	n:860000
C5orf36   860000 perm   557 sec   (1543 perm/sec)   p_kst 7.406977e-04   p_cons 2.409244e-01   p_joint 1.161628e-03

Joint ci ratio: 1.232744e-01	ci left: 1.089342e-03	ci right 1.233553e-03	k: 1009	n:870000
Cons ci ratio: 7.460249e-03	ci left: 2.400040e-01	ci right 2.418023e-01	k: 209585	n:870000
KS ci ratio: 1.533438e-01	ci left: 6.930163e-04	ci right 8.091999e-04	k: 652	n:870000
C5orf36   870000 perm   568 sec   (1532 perm/sec)   p_kst 7.494253e-04   p_cons 2.409023e-01   p_joint 1.159770e-03

Joint ci ratio: 1.226687e-01	ci left: 1.087977e-03	ci right 1.231248e-03	k: 1019	n:880000
Cons ci ratio: 7.418179e-03	ci left: 2.399875e-01	ci right 2.417755e-01	k: 211975	n:880000
KS ci ratio: 1.529931e-01	ci left: 6.884194e-04	ci right 8.035443e-04	k: 655	n:880000
C5orf36   880000 perm   578 sec   (1522 perm/sec)   p_kst 7.443182e-04   p_cons 2.408807e-01   p_joint 1.157955e-03

Joint ci ratio: 1.218353e-01	ci left: 1.091002e-03	ci right 1.233625e-03	k: 1033	n:890000
Cons ci ratio: 7.377493e-03	ci left: 2.399378e-01	ci right 2.417156e-01	k: 214335	n:890000
KS ci ratio: 1.520687e-01	ci left: 6.893301e-04	ci right 8.038472e-04	k: 663	n:890000
C5orf36   890000 perm   589 sec   (1511 perm/sec)   p_kst 7.449438e-04   p_cons 2.408258e-01   p_joint 1.160674e-03

Joint ci ratio: 1.212505e-01	ci left: 1.089653e-03	ci right 1.231367e-03	k: 1043	n:900000
Cons ci ratio: 7.333613e-03	ci left: 2.400812e-01	ci right 2.418494e-01	k: 216868	n:900000
KS ci ratio: 1.511607e-01	ci left: 6.902225e-04	ci right 8.041414e-04	k: 671	n:900000
C5orf36   900000 perm   600 sec   (1501 perm/sec)   p_kst 7.455556e-04   p_cons 2.409644e-01   p_joint 1.158889e-03

Joint ci ratio: 1.206168e-01	ci left: 1.089401e-03	ci right 1.230289e-03	k: 1054	n:910000
Cons ci ratio: 7.292827e-03	ci left: 2.401051e-01	ci right 2.418636e-01	k: 219295	n:910000
KS ci ratio: 1.503796e-01	ci left: 6.900398e-04	ci right 8.032870e-04	k: 678	n:910000
C5orf36   910000 perm   610 sec   (1491 perm/sec)   p_kst 7.450549e-04   p_cons 2.409835e-01   p_joint 1.158242e-03

Joint ci ratio: 1.206748e-01	ci left: 1.076505e-03	ci right 1.215797e-03	k: 1053	n:920000
Cons ci ratio: 7.254589e-03	ci left: 2.400341e-01	ci right 2.417828e-01	k: 221635	n:920000
KS ci ratio: 1.498291e-01	ci left: 6.877699e-04	ci right 8.001945e-04	k: 683	n:920000
C5orf36   920000 perm   621 sec   (1480 perm/sec)   p_kst 7.423913e-04   p_cons 2.409076e-01   p_joint 1.144565e-03

Joint ci ratio: 1.201630e-01	ci left: 1.074316e-03	ci right 1.212692e-03	k: 1062	n:930000
Cons ci ratio: 7.215058e-03	ci left: 2.400602e-01	ci right 2.417995e-01	k: 224064	n:930000
KS ci ratio: 1.490683e-01	ci left: 6.876200e-04	ci right 7.993984e-04	k: 690	n:930000
C5orf36   930000 perm   633 sec   (1469 perm/sec)   p_kst 7.419355e-04   p_cons 2.409290e-01   p_joint 1.141935e-03

Joint ci ratio: 1.198257e-01	ci left: 1.069078e-03	ci right 1.206366e-03	k: 1068	n:940000
Cons ci ratio: 7.174956e-03	ci left: 2.401474e-01	ci right 2.418776e-01	k: 226551	n:940000
KS ci ratio: 1.485321e-01	ci left: 6.854259e-04	ci right 7.964112e-04	k: 695	n:940000
C5orf36   940000 perm   644 sec   (1460 perm/sec)   p_kst 7.393617e-04   p_cons 2.410117e-01   p_joint 1.136170e-03

Joint ci ratio: 1.192139e-01	ci left: 1.069057e-03	ci right 1.205592e-03	k: 1079	n:950000
Cons ci ratio: 7.137445e-03	ci left: 2.401339e-01	ci right 2.418550e-01	k: 228944	n:950000
KS ci ratio: 1.480016e-01	ci left: 6.832788e-04	ci right 7.934863e-04	k: 700	n:950000
C5orf36   950000 perm   655 sec   (1451 perm/sec)   p_kst 7.368421e-04   p_cons 2.409937e-01   p_joint 1.135789e-03

Joint ci ratio: 1.186659e-01	ci left: 1.068028e-03	ci right 1.203761e-03	k: 1089	n:960000
Cons ci ratio: 7.100516e-03	ci left: 2.401208e-01	ci right 2.418329e-01	k: 231337	n:960000
KS ci ratio: 1.474768e-01	ci left: 6.811770e-04	ci right 7.906216e-04	k: 705	n:960000
C5orf36   960000 perm   667 sec   (1440 perm/sec)   p_kst 7.343750e-04   p_cons 2.409760e-01   p_joint 1.134375e-03

Joint ci ratio: 1.182330e-01	ci left: 1.065020e-03	ci right 1.199843e-03	k: 1097	n:970000
Cons ci ratio: 7.063279e-03	ci left: 2.401533e-01	ci right 2.418565e-01	k: 233774	n:970000
KS ci ratio: 1.462389e-01	ci left: 6.860713e-04	ci right 7.952961e-04	k: 717	n:970000
C5orf36   970000 perm   678 sec   (1431 perm/sec)   p_kst 7.391753e-04   p_cons 2.410041e-01   p_joint 1.130928e-03

Joint ci ratio: 1.176983e-01	ci left: 1.064056e-03	ci right 1.198104e-03	k: 1107	n:980000
Cons ci ratio: 7.027307e-03	ci left: 2.401494e-01	ci right 2.418440e-01	k: 236176	n:980000
KS ci ratio: 1.456318e-01	ci left: 6.849694e-04	ci right 7.935267e-04	k: 723	n:980000
C5orf36   980000 perm   689 sec   (1422 perm/sec)   p_kst 7.377551e-04   p_cons 2.409959e-01   p_joint 1.129592e-03

Joint ci ratio: 1.170138e-01	ci left: 1.066054e-03	ci right 1.199519e-03	k: 1120	n:990000
Cons ci ratio: 6.991050e-03	ci left: 2.401890e-01	ci right 2.418751e-01	k: 238621	n:990000
KS ci ratio: 1.449328e-01	ci left: 6.848642e-04	ci right 7.928389e-04	k: 730	n:990000
C5orf36   990000 perm   700 sec   (1414 perm/sec)   p_kst 7.373737e-04   p_cons 2.410313e-01   p_joint 1.131313e-03

Joint ci ratio: 1.193280e-01	ci left: 1.013662e-03	ci right 1.143255e-03	k: 1077	n:1000000
Cons ci ratio: 6.955690e-03	ci left: 2.402099e-01	ci right 2.418876e-01	k: 241048	n:1000000
KS ci ratio: 1.443418e-01	ci left: 6.837984e-04	ci right 7.911275e-04	k: 736	n:1000000
C5orf36   1000000 perm   712 sec   (1405 perm/sec)   p_kst 7.360000e-04   p_cons 2.410480e-01   p_joint 1.077000e-03

Joint ci ratio: 1.071353e-01	ci left: 1.252828e-03	ci right 1.395601e-03	k: 1336	n:1010000
Cons ci ratio: 7.106109e-03	ci left: 2.307093e-01	ci right 2.323556e-01	k: 233847	n:1010000
KS ci ratio: 1.443423e-01	ci left: 6.770280e-04	ci right 7.832948e-04	k: 736	n:1010000
C5orf36   1010000 perm   723 sec   (1397 perm/sec)   p_kst 7.287129e-04   p_cons 2.315317e-01   p_joint 1.322772e-03

Joint ci ratio: 1.065787e-01	ci left: 1.253904e-03	ci right 1.396011e-03	k: 1350	n:1020000
Cons ci ratio: 7.069949e-03	ci left: 2.307757e-01	ci right 2.324140e-01	k: 236226	n:1020000
KS ci ratio: 1.437584e-01	ci left: 6.760608e-04	ci right 7.817097e-04	k: 742	n:1020000
C5orf36   1020000 perm   735 sec   (1388 perm/sec)   p_kst 7.274510e-04   p_cons 2.315941e-01   p_joint 1.323529e-03

Joint ci ratio: 1.061086e-01	ci left: 1.253071e-03	ci right 1.394418e-03	k: 1362	n:1030000
Cons ci ratio: 7.036753e-03	ci left: 2.307187e-01	ci right 2.323489e-01	k: 238479	n:1030000
KS ci ratio: 1.433732e-01	ci left: 6.732410e-04	ci right 7.781432e-04	k: 746	n:1030000
C5orf36   1030000 perm   746 sec   (1380 perm/sec)   p_kst 7.242718e-04   p_cons 2.315330e-01   p_joint 1.322330e-03

Joint ci ratio: 1.053001e-01	ci left: 1.260681e-03	ci right 1.401735e-03	k: 1383	n:1040000
Cons ci ratio: 7.003453e-03	ci left: 2.306915e-01	ci right 2.323138e-01	k: 240762	n:1040000
KS ci ratio: 1.425171e-01	ci left: 6.751119e-04	ci right 7.796242e-04	k: 755	n:1040000
C5orf36   1040000 perm   758 sec   (1372 perm/sec)   p_kst 7.259615e-04   p_cons 2.315019e-01   p_joint 1.329808e-03

Joint ci ratio: 1.047340e-01	ci left: 1.262585e-03	ci right 1.403046e-03	k: 1398	n:1050000
Cons ci ratio: 6.969483e-03	ci left: 2.307230e-01	ci right 2.323375e-01	k: 243106	n:1050000
KS ci ratio: 1.417690e-01	ci left: 6.760304e-04	ci right 7.800890e-04	k: 763	n:1050000
C5orf36   1050000 perm   770 sec   (1364 perm/sec)   p_kst 7.266667e-04   p_cons 2.315295e-01   p_joint 1.331429e-03

Joint ci ratio: 1.044360e-01	ci left: 1.258023e-03	ci right 1.397555e-03	k: 1406	n:1060000
Cons ci ratio: 6.937345e-03	ci left: 2.306851e-01	ci right 2.322919e-01	k: 245377	n:1060000
KS ci ratio: 1.410324e-01	ci left: 6.769329e-04	ci right 7.805436e-04	k: 771	n:1060000
C5orf36   1060000 perm   782 sec   (1356 perm/sec)   p_kst 7.273585e-04   p_cons 2.314877e-01   p_joint 1.326415e-03

Joint ci ratio: 1.038837e-01	ci left: 1.259920e-03	ci right 1.398877e-03	k: 1421	n:1070000
Cons ci ratio: 6.906519e-03	ci left: 2.306031e-01	ci right 2.322021e-01	k: 247600	n:1070000
KS ci ratio: 1.406687e-01	ci left: 6.742130e-04	ci right 7.771189e-04	k: 775	n:1070000
C5orf36   1070000 perm   794 sec   (1347 perm/sec)   p_kst 7.242991e-04   p_cons 2.314019e-01   p_joint 1.328037e-03

Joint ci ratio: 1.032680e-01	ci left: 1.263587e-03	ci right 1.402073e-03	k: 1438	n:1080000
Cons ci ratio: 6.875043e-03	ci left: 2.305771e-01	ci right 2.321687e-01	k: 249882	n:1080000
KS ci ratio: 1.397708e-01	ci left: 6.769048e-04	ci right 7.795071e-04	k: 785	n:1080000
C5orf36   1080000 perm   806 sec   (1339 perm/sec)   p_kst 7.268519e-04   p_cons 2.313722e-01   p_joint 1.331481e-03

Joint ci ratio: 1.029112e-01	ci left: 1.260932e-03	ci right 1.398621e-03	k: 1448	n:1090000
Cons ci ratio: 6.843093e-03	ci left: 2.305985e-01	ci right 2.321828e-01	k: 252215	n:1090000
KS ci ratio: 1.389773e-01	ci left: 6.786636e-04	ci right 7.809003e-04	k: 794	n:1090000
C5orf36   1090000 perm   819 sec   (1331 perm/sec)   p_kst 7.284404e-04   p_cons 2.313899e-01   p_joint 1.328440e-03

Joint ci ratio: 1.058800e-01	ci left: 1.178637e-03	ci right 1.311284e-03	k: 1368	n:1100000
Cons ci ratio: 6.811898e-03	ci left: 2.306031e-01	ci right 2.321802e-01	k: 254530	n:1100000
KS ci ratio: 1.381112e-01	ci left: 6.812698e-04	ci right 7.832069e-04	k: 804	n:1100000
C5orf36   1100000 perm   831 sec   (1323 perm/sec)   p_kst 7.309091e-04   p_cons 2.313909e-01   p_joint 1.243636e-03

Joint ci ratio: 1.053045e-01	ci left: 1.181176e-03	ci right 1.313341e-03	k: 1383	n:1110000
Cons ci ratio: 6.780886e-03	ci left: 2.306202e-01	ci right 2.321902e-01	k: 256859	n:1110000
KS ci ratio: 1.375146e-01	ci left: 6.812212e-04	ci right 7.826746e-04	k: 811	n:1110000
C5orf36   1110000 perm   844 sec   (1316 perm/sec)   p_kst 7.306306e-04   p_cons 2.314045e-01   p_joint 1.245946e-03

Joint ci ratio: 1.069422e-01	ci left: 1.134123e-03	ci right 1.263121e-03	k: 1341	n:1120000
Cons ci ratio: 6.751428e-03	ci left: 2.305773e-01	ci right 2.321402e-01	k: 259121	n:1120000
KS ci ratio: 1.370095e-01	ci left: 6.803120e-04	ci right 7.812274e-04	k: 817	n:1120000
C5orf36   1120000 perm   856 sec   (1308 perm/sec)   p_kst 7.294643e-04   p_cons 2.313580e-01   p_joint 1.197321e-03

Joint ci ratio: 1.068233e-01	ci left: 1.126671e-03	ci right 1.254669e-03	k: 1344	n:1130000
Cons ci ratio: 6.720913e-03	ci left: 2.306112e-01	ci right 2.321672e-01	k: 261469	n:1130000
KS ci ratio: 1.360972e-01	ci left: 6.836936e-04	ci right 7.843807e-04	k: 828	n:1130000
C5orf36   1130000 perm   869 sec   (1301 perm/sec)   p_kst 7.327434e-04   p_cons 2.313885e-01   p_joint 1.189381e-03

Joint ci ratio: 1.062716e-01	ci left: 1.128741e-03	ci right 1.256271e-03	k: 1358	n:1140000
Cons ci ratio: 6.690428e-03	ci left: 2.306646e-01	ci right 2.322139e-01	k: 263840	n:1140000
KS ci ratio: 1.354452e-01	ci left: 6.844754e-04	ci right 7.847559e-04	k: 836	n:1140000
C5orf36   1140000 perm   881 sec   (1293 perm/sec)   p_kst 7.333333e-04   p_cons 2.314386e-01   p_joint 1.191228e-03

Joint ci ratio: 1.063505e-01	ci left: 1.117233e-03	ci right 1.243562e-03	k: 1356	n:1150000
Cons ci ratio: 6.661428e-03	ci left: 2.306599e-01	ci right 2.322024e-01	k: 266145	n:1150000
KS ci ratio: 1.350426e-01	ci left: 6.827242e-04	ci right 7.824268e-04	k: 841	n:1150000
C5orf36   1150000 perm   894 sec   (1286 perm/sec)   p_kst 7.313043e-04   p_cons 2.314304e-01   p_joint 1.179130e-03

Joint ci ratio: 1.058447e-01	ci left: 1.118511e-03	ci right 1.244346e-03	k: 1369	n:1160000
Cons ci ratio: 6.632369e-03	ci left: 2.306784e-01	ci right 2.322143e-01	k: 268477	n:1160000
KS ci ratio: 1.344848e-01	ci left: 6.826696e-04	ci right 7.819196e-04	k: 848	n:1160000
C5orf36   1160000 perm   908 sec   (1278 perm/sec)   p_kst 7.310345e-04   p_cons 2.314457e-01   p_joint 1.180172e-03

Joint ci ratio: 1.053841e-01	ci left: 1.118936e-03	ci right 1.244238e-03	k: 1381	n:1170000
Cons ci ratio: 6.605353e-03	ci left: 2.306070e-01	ci right 2.321362e-01	k: 270704	n:1170000
KS ci ratio: 1.336995e-01	ci left: 6.850952e-04	ci right 7.840700e-04	k: 858	n:1170000
C5orf36   1170000 perm   921 sec   (1271 perm/sec)   p_kst 7.333333e-04   p_cons 2.313709e-01   p_joint 1.180342e-03

Joint ci ratio: 1.060396e-01	ci left: 1.095427e-03	ci right 1.218907e-03	k: 1364	n:1180000
Cons ci ratio: 6.577284e-03	ci left: 2.306114e-01	ci right 2.321340e-01	k: 273019	n:1180000
KS ci ratio: 1.335444e-01	ci left: 6.809275e-04	ci right 7.791770e-04	k: 860	n:1180000
C5orf36   1180000 perm   934 sec   (1264 perm/sec)   p_kst 7.288136e-04   p_cons 2.313720e-01   p_joint 1.155932e-03

Joint ci ratio: 1.056150e-01	ci left: 1.095221e-03	ci right 1.218152e-03	k: 1375	n:1190000
Cons ci ratio: 6.549153e-03	ci left: 2.306383e-01	ci right 2.321546e-01	k: 275361	n:1190000
KS ci ratio: 1.330816e-01	ci left: 6.800792e-04	ci right 7.778394e-04	k: 866	n:1190000
C5orf36   1190000 perm   947 sec   (1257 perm/sec)   p_kst 7.277311e-04   p_cons 2.313958e-01   p_joint 1.155462e-03

Joint ci ratio: 1.055387e-01	ci left: 1.087717e-03	ci right 1.209712e-03	k: 1377	n:1200000
Cons ci ratio: 6.521547e-03	ci left: 2.306557e-01	ci right 2.321656e-01	k: 277692	n:1200000
KS ci ratio: 1.324718e-01	ci left: 6.808571e-04	ci right 7.782454e-04	k: 874	n:1200000
C5orf36   1200000 perm   960 sec   (1250 perm/sec)   p_kst 7.283333e-04   p_cons 2.314100e-01   p_joint 1.147500e-03

Joint ci ratio: 1.064715e-01	ci left: 1.059418e-03	ci right 1.179355e-03	k: 1353	n:1210000
Cons ci ratio: 6.494635e-03	ci left: 2.306538e-01	ci right 2.321574e-01	k: 280000	n:1210000
KS ci ratio: 1.319451e-01	ci left: 6.808240e-04	ci right 7.777900e-04	k: 881	n:1210000
C5orf36   1210000 perm   973 sec   (1243 perm/sec)   p_kst 7.280992e-04   p_cons 2.314050e-01   p_joint 1.118182e-03

Joint ci ratio: 1.063541e-01	ci left: 1.053127e-03	ci right 1.172212e-03	k: 1356	n:1220000
Cons ci ratio: 6.467621e-03	ci left: 2.306756e-01	ci right 2.321732e-01	k: 282337	n:1220000
KS ci ratio: 1.316471e-01	ci left: 6.784140e-04	ci right 7.748014e-04	k: 885	n:1220000
C5orf36   1220000 perm   986 sec   (1237 perm/sec)   p_kst 7.254098e-04   p_cons 2.314238e-01   p_joint 1.111475e-03

Joint ci ratio: 1.063938e-01	ci left: 1.043774e-03	ci right 1.161848e-03	k: 1355	n:1230000
Cons ci ratio: 6.440750e-03	ci left: 2.307077e-01	ci right 2.321992e-01	k: 284687	n:1230000
KS ci ratio: 1.311301e-01	ci left: 6.784025e-04	ci right 7.743802e-04	k: 892	n:1230000
C5orf36   1230000 perm   1000 sec   (1230 perm/sec)   p_kst 7.252033e-04   p_cons 2.314528e-01   p_joint 1.101626e-03

Joint ci ratio: 1.060037e-01	ci left: 1.043206e-03	ci right 1.160757e-03	k: 1365	n:1240000
Cons ci ratio: 6.414735e-03	ci left: 2.307103e-01	ci right 2.321958e-01	k: 287001	n:1240000
KS ci ratio: 1.305466e-01	ci left: 6.791719e-04	ci right 7.747979e-04	k: 900	n:1240000
C5orf36   1240000 perm   1013 sec   (1224 perm/sec)   p_kst 7.258065e-04   p_cons 2.314524e-01   p_joint 1.100806e-03

Joint ci ratio: 9.464756e-02	ci left: 1.305525e-03	ci right 1.436002e-03	k: 1712	n:1250000
Cons ci ratio: 6.388759e-03	ci left: 2.307280e-01	ci right 2.322076e-01	k: 289334	n:1250000
KS ci ratio: 1.299709e-01	ci left: 6.799300e-04	ci right 7.752079e-04	k: 908	n:1250000
C5orf36   1250000 perm   1027 sec   (1217 perm/sec)   p_kst 7.264000e-04   p_cons 2.314672e-01   p_joint 1.369600e-03

Joint ci ratio: 9.420853e-02	ci left: 1.307563e-03	ci right 1.437604e-03	k: 1728	n:1260000
Cons ci ratio: 6.363550e-03	ci left: 2.307201e-01	ci right 2.321938e-01	k: 291635	n:1260000
KS ci ratio: 1.294026e-01	ci left: 6.806770e-04	ci right 7.756105e-04	k: 916	n:1260000
C5orf36   1260000 perm   1040 sec   (1211 perm/sec)   p_kst 7.269841e-04   p_cons 2.314563e-01   p_joint 1.371429e-03

Joint ci ratio: 9.385637e-02	ci left: 1.307262e-03	ci right 1.436761e-03	k: 1741	n:1270000
Cons ci ratio: 6.338834e-03	ci left: 2.307014e-01	ci right 2.321692e-01	k: 293922	n:1270000
KS ci ratio: 1.289814e-01	ci left: 6.798890e-04	ci right 7.743804e-04	k: 922	n:1270000
C5orf36   1270000 perm   1054 sec   (1205 perm/sec)   p_kst 7.259843e-04   p_cons 2.314346e-01   p_joint 1.370866e-03

Joint ci ratio: 9.345483e-02	ci left: 1.308494e-03	ci right 1.437529e-03	k: 1756	n:1280000
Cons ci ratio: 6.313905e-03	ci left: 2.307110e-01	ci right 2.321730e-01	k: 296245	n:1280000
KS ci ratio: 1.284951e-01	ci left: 6.798700e-04	ci right 7.739753e-04	k: 929	n:1280000
C5orf36   1280000 perm   1067 sec   (1199 perm/sec)   p_kst 7.257812e-04   p_cons 2.314414e-01   p_joint 1.371875e-03

Joint ci ratio: 9.295339e-02	ci left: 1.312736e-03	ci right 1.441457e-03	k: 1775	n:1290000
Cons ci ratio: 6.289377e-03	ci left: 2.307143e-01	ci right 2.321707e-01	k: 298560	n:1290000
KS ci ratio: 1.278097e-01	ci left: 6.821032e-04	ci right 7.759758e-04	k: 939	n:1290000
C5orf36   1290000 perm   1081 sec   (1193 perm/sec)   p_kst 7.279070e-04   p_cons 2.314419e-01   p_joint 1.375969e-03

Joint ci ratio: 9.287537e-02	ci left: 1.304892e-03	ci right 1.432731e-03	k: 1778	n:1300000
Cons ci ratio: 6.264333e-03	ci left: 2.307629e-01	ci right 2.322137e-01	k: 300934	n:1300000
KS ci ratio: 1.272021e-01	ci left: 6.835585e-04	ci right 7.771505e-04	k: 948	n:1300000
C5orf36   1300000 perm   1095 sec   (1187 perm/sec)   p_kst 7.292308e-04   p_cons 2.314877e-01   p_joint 1.367692e-03

Joint ci ratio: 9.269342e-02	ci left: 1.300150e-03	ci right 1.427262e-03	k: 1785	n:1310000
Cons ci ratio: 6.240095e-03	ci left: 2.307817e-01	ci right 2.322271e-01	k: 303270	n:1310000
KS ci ratio: 1.266031e-01	ci left: 6.849927e-04	ci right 7.783062e-04	k: 957	n:1310000
C5orf36   1310000 perm   1110 sec   (1181 perm/sec)   p_kst 7.305344e-04   p_cons 2.315038e-01   p_joint 1.362595e-03

Joint ci ratio: 9.467868e-02	ci left: 1.235551e-03	ci right 1.359078e-03	k: 1711	n:1320000
Cons ci ratio: 6.216838e-03	ci left: 2.307602e-01	ci right 2.322000e-01	k: 305553	n:1320000
KS ci ratio: 1.261431e-01	ci left: 6.849387e-04	ci right 7.778805e-04	k: 964	n:1320000
C5orf36   1320000 perm   1125 sec   (1173 perm/sec)   p_kst 7.303030e-04   p_cons 2.314795e-01   p_joint 1.296212e-03

Joint ci ratio: 9.484571e-02	ci left: 1.221857e-03	ci right 1.344241e-03	k: 1705	n:1330000
Cons ci ratio: 6.192242e-03	ci left: 2.308307e-01	ci right 2.322652e-01	k: 307958	n:1330000
KS ci ratio: 1.254300e-01	ci left: 6.877993e-04	ci right 7.805625e-04	k: 975	n:1330000
C5orf36   1330000 perm   1139 sec   (1167 perm/sec)   p_kst 7.330827e-04   p_cons 2.315474e-01   p_joint 1.281955e-03

Joint ci ratio: 8.273733e-02	ci left: 1.603180e-03	ci right 1.742272e-03	k: 2240	n:1340000
Cons ci ratio: 6.168129e-03	ci left: 2.308889e-01	ci right 2.323182e-01	k: 310348	n:1340000
KS ci ratio: 1.248556e-01	ci left: 6.891727e-04	ci right 7.816640e-04	k: 984	n:1340000
C5orf36   1340000 perm   1154 sec   (1161 perm/sec)   p_kst 7.343284e-04   p_cons 2.316030e-01   p_joint 1.671642e-03

Joint ci ratio: 8.266398e-02	ci left: 1.594206e-03	ci right 1.732391e-03	k: 2244	n:1350000
Cons ci ratio: 6.144871e-03	ci left: 2.309130e-01	ci right 2.323370e-01	k: 312693	n:1350000
KS ci ratio: 1.244771e-01	ci left: 6.883735e-04	ci right 7.804569e-04	k: 990	n:1350000
C5orf36   1350000 perm   1168 sec   (1156 perm/sec)   p_kst 7.333333e-04   p_cons 2.316244e-01   p_joint 1.662222e-03

Joint ci ratio: 7.711663e-02	ci left: 1.823180e-03	ci right 1.970131e-03	k: 2578	n:1360000
Cons ci ratio: 6.122064e-03	ci left: 2.309257e-01	ci right 2.323445e-01	k: 315023	n:1360000
KS ci ratio: 1.241644e-01	ci left: 6.868741e-04	ci right 7.785090e-04	k: 995	n:1360000
C5orf36   1360000 perm   1183 sec   (1150 perm/sec)   p_kst 7.316176e-04   p_cons 2.316346e-01   p_joint 1.895588e-03

Joint ci ratio: 7.780018e-02	ci left: 1.777660e-03	ci right 1.922270e-03	k: 2533	n:1370000
Cons ci ratio: 6.100022e-03	ci left: 2.309084e-01	ci right 2.323219e-01	k: 317312	n:1370000
KS ci ratio: 1.233617e-01	ci left: 6.910558e-04	ci right 7.826090e-04	k: 1008	n:1370000
C5orf36   1370000 perm   1198 sec   (1144 perm/sec)   p_kst 7.357664e-04   p_cons 2.316146e-01   p_joint 1.848905e-03

Joint ci ratio: 7.793949e-02	ci left: 1.758383e-03	ci right 1.901692e-03	k: 2524	n:1380000
Cons ci ratio: 6.077326e-03	ci left: 2.309434e-01	ci right 2.323519e-01	k: 319673	n:1380000
KS ci ratio: 1.227548e-01	ci left: 6.930715e-04	ci right 7.844072e-04	k: 1018	n:1380000
C5orf36   1380000 perm   1212 sec   (1138 perm/sec)   p_kst 7.376812e-04   p_cons 2.316471e-01   p_joint 1.828986e-03

Joint ci ratio: 7.784739e-02	ci left: 1.749965e-03	ci right 1.892412e-03	k: 2530	n:1390000
Cons ci ratio: 6.056447e-03	ci left: 2.308860e-01	ci right 2.322893e-01	k: 321906	n:1390000
KS ci ratio: 1.223353e-01	ci left: 6.929670e-04	ci right 7.839543e-04	k: 1025	n:1390000
C5orf36   1390000 perm   1227 sec   (1133 perm/sec)   p_kst 7.374101e-04   p_cons 2.315871e-01   p_joint 1.820144e-03

Joint ci ratio: 7.758730e-02	ci left: 1.749372e-03	ci right 1.891273e-03	k: 2547	n:1400000
Cons ci ratio: 6.034777e-03	ci left: 2.308886e-01	ci right 2.322868e-01	k: 324222	n:1400000
KS ci ratio: 1.220977e-01	ci left: 6.907869e-04	ci right 7.812991e-04	k: 1029	n:1400000
C5orf36   1400000 perm   1242 sec   (1127 perm/sec)   p_kst 7.350000e-04   p_cons 2.315871e-01   p_joint 1.819286e-03

Joint ci ratio: 7.758780e-02	ci left: 1.736964e-03	ci right 1.877861e-03	k: 2547	n:1410000
Cons ci ratio: 6.012774e-03	ci left: 2.309244e-01	ci right 2.323178e-01	k: 326585	n:1410000
KS ci ratio: 1.216263e-01	ci left: 6.913886e-04	ci right 7.816046e-04	k: 1037	n:1410000
C5orf36   1410000 perm   1257 sec   (1122 perm/sec)   p_kst 7.354610e-04   p_cons 2.316206e-01   p_joint 1.806383e-03

Joint ci ratio: 7.754258e-02	ci left: 1.726804e-03	ci right 1.866790e-03	k: 2550	n:1420000
Cons ci ratio: 5.991366e-03	ci left: 2.309387e-01	ci right 2.323272e-01	k: 328918	n:1420000
KS ci ratio: 1.213345e-01	ci left: 6.899337e-04	ci right 7.797284e-04	k: 1042	n:1420000
C5orf36   1420000 perm   1272 sec   (1116 perm/sec)   p_kst 7.338028e-04   p_cons 2.316324e-01   p_joint 1.795775e-03

Joint ci ratio: 7.772642e-02	ci left: 1.706499e-03	ci right 1.845182e-03	k: 2538	n:1430000
Cons ci ratio: 5.969845e-03	ci left: 2.309730e-01	ci right 2.323567e-01	k: 331280	n:1430000
KS ci ratio: 1.209294e-01	ci left: 6.898558e-04	ci right 7.793191e-04	k: 1049	n:1430000
C5orf36   1430000 perm   1288 sec   (1110 perm/sec)   p_kst 7.335664e-04   p_cons 2.316643e-01   p_joint 1.774825e-03

Joint ci ratio: 7.783446e-02	ci left: 1.689881e-03	ci right 1.827413e-03	k: 2531	n:1440000
Cons ci ratio: 5.949738e-03	ci left: 2.309362e-01	ci right 2.323149e-01	k: 333540	n:1440000
KS ci ratio: 1.201309e-01	ci left: 6.944943e-04	ci right 7.839223e-04	k: 1063	n:1440000
C5orf36   1440000 perm   1304 sec   (1104 perm/sec)   p_kst 7.381944e-04   p_cons 2.316250e-01   p_joint 1.757639e-03

Joint ci ratio: 7.748319e-02	ci left: 1.693781e-03	ci right 1.830980e-03	k: 2554	n:1450000
Cons ci ratio: 5.929453e-03	ci left: 2.309225e-01	ci right 2.322965e-01	k: 335833	n:1450000
KS ci ratio: 1.197936e-01	ci left: 6.937185e-04	ci right 7.827780e-04	k: 1069	n:1450000
C5orf36   1450000 perm   1319 sec   (1099 perm/sec)   p_kst 7.372414e-04   p_cons 2.316090e-01   p_joint 1.761379e-03

Joint ci ratio: 7.716663e-02	ci left: 1.696285e-03	ci right 1.833101e-03	k: 2575	n:1460000
Cons ci ratio: 5.909192e-03	ci left: 2.309200e-01	ci right 2.322893e-01	k: 338142	n:1460000
KS ci ratio: 1.194592e-01	ci left: 6.929536e-04	ci right 7.816490e-04	k: 1075	n:1460000
C5orf36   1460000 perm   1335 sec   (1094 perm/sec)   p_kst 7.363014e-04   p_cons 2.316041e-01   p_joint 1.763699e-03

Joint ci ratio: 7.682428e-02	ci left: 1.700091e-03	ci right 1.836578e-03	k: 2598	n:1470000
Cons ci ratio: 5.888913e-03	ci left: 2.309312e-01	ci right 2.322958e-01	k: 340471	n:1470000
KS ci ratio: 1.189627e-01	ci left: 6.941795e-04	ci right 7.826366e-04	k: 1084	n:1470000
C5orf36   1470000 perm   1351 sec   (1088 perm/sec)   p_kst 7.374150e-04   p_cons 2.316129e-01   p_joint 1.767347e-03

Joint ci ratio: 7.658894e-02	ci left: 1.699207e-03	ci right 1.835187e-03	k: 2614	n:1480000
Cons ci ratio: 5.869621e-03	ci left: 2.308949e-01	ci right 2.322548e-01	k: 342730	n:1480000
KS ci ratio: 1.183640e-01	ci left: 6.967010e-04	ci right 7.850014e-04	k: 1095	n:1480000
C5orf36   1480000 perm   1367 sec   (1083 perm/sec)   p_kst 7.398649e-04   p_cons 2.315743e-01   p_joint 1.766216e-03

Joint ci ratio: 7.644311e-02	ci left: 1.694386e-03	ci right 1.829710e-03	k: 2624	n:1490000
Cons ci ratio: 5.850120e-03	ci left: 2.308833e-01	ci right 2.322386e-01	k: 345025	n:1490000
KS ci ratio: 1.180951e-01	ci left: 6.952816e-04	ci right 7.831878e-04	k: 1100	n:1490000
C5orf36   1490000 perm   1382 sec   (1078 perm/sec)   p_kst 7.382550e-04   p_cons 2.315604e-01   p_joint 1.761074e-03

Joint ci ratio: 7.641441e-02	ci left: 1.684397e-03	ci right 1.818871e-03	k: 2626	n:1500000
Cons ci ratio: 5.830332e-03	ci left: 2.309011e-01	ci right 2.322519e-01	k: 347364	n:1500000
KS ci ratio: 1.175094e-01	ci left: 6.977637e-04	ci right 7.855158e-04	k: 1111	n:1500000
C5orf36   1500000 perm   1399 sec   (1072 perm/sec)   p_kst 7.406667e-04   p_cons 2.315760e-01   p_joint 1.750667e-03

Joint ci ratio: 7.292445e-02	ci left: 1.840270e-03	ci right 1.980194e-03	k: 2883	n:1510000
Cons ci ratio: 5.810602e-03	ci left: 2.309273e-01	ci right 2.322737e-01	k: 349716	n:1510000
KS ci ratio: 1.171413e-01	ci left: 6.976424e-04	ci right 7.850855e-04	k: 1118	n:1510000
C5orf36   1510000 perm   1415 sec   (1067 perm/sec)   p_kst 7.403974e-04   p_cons 2.316000e-01   p_joint 1.909272e-03

Joint ci ratio: 7.272308e-02	ci left: 1.838498e-03	ci right 1.977885e-03	k: 2899	n:1520000
Cons ci ratio: 5.792056e-03	ci left: 2.308927e-01	ci right 2.322346e-01	k: 351976	n:1520000
KS ci ratio: 1.169326e-01	ci left: 6.956072e-04	ci right 7.826291e-04	k: 1122	n:1520000
C5orf36   1520000 perm   1431 sec   (1062 perm/sec)   p_kst 7.381579e-04   p_cons 2.315632e-01   p_joint 1.907237e-03

Joint ci ratio: 6.608024e-02	ci left: 2.218927e-03	ci right 2.371202e-03	k: 3510	n:1530000
Cons ci ratio: 5.773284e-03	ci left: 2.308834e-01	ci right 2.322209e-01	k: 354274	n:1530000
KS ci ratio: 1.163639e-01	ci left: 6.980405e-04	ci right 7.849130e-04	k: 1133	n:1530000
C5orf36   1530000 perm   1447 sec   (1057 perm/sec)   p_kst 7.405229e-04   p_cons 2.315516e-01   p_joint 2.294118e-03

Joint ci ratio: 6.586486e-02	ci left: 2.219207e-03	ci right 2.370986e-03	k: 3533	n:1540000
Cons ci ratio: 5.754746e-03	ci left: 2.308710e-01	ci right 2.322040e-01	k: 356567	n:1540000
KS ci ratio: 1.158035e-01	ci left: 7.004433e-04	ci right 7.871663e-04	k: 1144	n:1540000
C5orf36   1540000 perm   1463 sec   (1052 perm/sec)   p_kst 7.428571e-04   p_cons 2.315370e-01   p_joint 2.294156e-03

Joint ci ratio: 6.556848e-02	ci left: 2.225196e-03	ci right 2.376674e-03	k: 3565	n:1550000
Cons ci ratio: 5.735147e-03	ci left: 2.309354e-01	ci right 2.322643e-01	k: 358979	n:1550000
KS ci ratio: 1.153010e-01	ci left: 7.021895e-04	ci right 7.887258e-04	k: 1154	n:1550000
C5orf36   1550000 perm   1479 sec   (1048 perm/sec)   p_kst 7.445161e-04   p_cons 2.315994e-01   p_joint 2.300000e-03

Joint ci ratio: 6.550455e-02	ci left: 2.215345e-03	ci right 2.366000e-03	k: 3572	n:1560000
Cons ci ratio: 5.716540e-03	ci left: 2.309497e-01	ci right 2.322744e-01	k: 361314	n:1560000
KS ci ratio: 1.151020e-01	ci left: 7.001785e-04	ci right 7.863078e-04	k: 1158	n:1560000
C5orf36   1560000 perm   1496 sec   (1043 perm/sec)   p_kst 7.423077e-04   p_cons 2.316115e-01   p_joint 2.289744e-03

Joint ci ratio: 6.437712e-02	ci left: 2.280189e-03	ci right 2.432485e-03	k: 3698	n:1570000
Cons ci ratio: 5.698827e-03	ci left: 2.309193e-01	ci right 2.322396e-01	k: 363579	n:1570000
KS ci ratio: 1.147068e-01	ci left: 7.006678e-04	ci right 7.865414e-04	k: 1166	n:1570000
C5orf36   1570000 perm   1512 sec   (1038 perm/sec)   p_kst 7.426752e-04   p_cons 2.315790e-01   p_joint 2.355414e-03

Joint ci ratio: 6.436888e-02	ci left: 2.266379e-03	ci right 2.417733e-03	k: 3699	n:1580000
Cons ci ratio: 5.681247e-03	ci left: 2.308912e-01	ci right 2.322073e-01	k: 365847	n:1580000
KS ci ratio: 1.144619e-01	ci left: 6.993071e-04	ci right 7.848186e-04	k: 1171	n:1580000
C5orf36   1580000 perm   1529 sec   (1033 perm/sec)   p_kst 7.411392e-04   p_cons 2.315487e-01   p_joint 2.341139e-03

Joint ci ratio: 6.414385e-02	ci left: 2.268215e-03	ci right 2.419142e-03	k: 3725	n:1590000
Cons ci ratio: 5.663648e-03	ci left: 2.308747e-01	ci right 2.321866e-01	k: 368133	n:1590000
KS ci ratio: 1.138802e-01	ci left: 7.022406e-04	ci right 7.876451e-04	k: 1183	n:1590000
C5orf36   1590000 perm   1546 sec   (1029 perm/sec)   p_kst 7.440252e-04   p_cons 2.315302e-01   p_joint 2.342767e-03

Joint ci ratio: 6.396390e-02	ci left: 2.266953e-03	ci right 2.417357e-03	k: 3746	n:1600000
Cons ci ratio: 5.646331e-03	ci left: 2.308510e-01	ci right 2.321587e-01	k: 370407	n:1600000
KS ci ratio: 1.135928e-01	ci left: 7.014949e-04	ci right 7.865790e-04	k: 1189	n:1600000
C5orf36   1600000 perm   1562 sec   (1024 perm/sec)   p_kst 7.431250e-04   p_cons 2.315044e-01   p_joint 2.341250e-03

Joint ci ratio: 6.404151e-02	ci left: 2.247371e-03	ci right 2.396664e-03	k: 3737	n:1610000
Cons ci ratio: 5.629074e-03	ci left: 2.308338e-01	ci right 2.321374e-01	k: 372691	n:1610000
KS ci ratio: 1.134025e-01	ci left: 6.995517e-04	ci right 7.842484e-04	k: 1193	n:1610000
C5orf36   1610000 perm   1579 sec   (1020 perm/sec)   p_kst 7.409938e-04   p_cons 2.314851e-01   p_joint 2.321118e-03

Joint ci ratio: 6.383689e-02	ci left: 2.248077e-03	ci right 2.396921e-03	k: 3761	n:1620000
Cons ci ratio: 5.612431e-03	ci left: 2.307878e-01	ci right 2.320873e-01	k: 374928	n:1620000
KS ci ratio: 1.132605e-01	ci left: 6.970328e-04	ci right 7.813118e-04	k: 1196	n:1620000
C5orf36   1620000 perm   1596 sec   (1015 perm/sec)   p_kst 7.382716e-04   p_cons 2.314370e-01   p_joint 2.321605e-03

Joint ci ratio: 6.374400e-02	ci left: 2.240925e-03	ci right 2.389073e-03	k: 3772	n:1630000
Cons ci ratio: 5.595241e-03	ci left: 2.307865e-01	ci right 2.320820e-01	k: 377237	n:1630000
KS ci ratio: 1.130247e-01	ci left: 6.957372e-04	ci right 7.796728e-04	k: 1201	n:1630000
C5orf36   1630000 perm   1613 sec   (1011 perm/sec)   p_kst 7.368098e-04   p_cons 2.314337e-01   p_joint 2.314110e-03

Joint ci ratio: 6.355060e-02	ci left: 2.241062e-03	ci right 2.388753e-03	k: 3795	n:1640000
Cons ci ratio: 5.578733e-03	ci left: 2.307517e-01	ci right 2.320432e-01	k: 379491	n:1640000
KS ci ratio: 1.128373e-01	ci left: 6.938650e-04	ci right 7.774266e-04	k: 1205	n:1640000
C5orf36   1640000 perm   1630 sec   (1006 perm/sec)   p_kst 7.347561e-04   p_cons 2.313970e-01   p_joint 2.314024e-03

Joint ci ratio: 6.340056e-02	ci left: 2.238216e-03	ci right 2.385358e-03	k: 3813	n:1650000
Cons ci ratio: 5.562020e-03	ci left: 2.307397e-01	ci right 2.320273e-01	k: 381782	n:1650000
KS ci ratio: 1.122799e-01	ci left: 6.967278e-04	ci right 7.801922e-04	k: 1217	n:1650000
C5orf36   1650000 perm   1647 sec   (1002 perm/sec)   p_kst 7.375758e-04   p_cons 2.313830e-01   p_joint 2.310909e-03

Joint ci ratio: 6.321025e-02	ci left: 2.238369e-03	ci right 2.385063e-03	k: 3836	n:1660000
Cons ci ratio: 5.545296e-03	ci left: 2.307382e-01	ci right 2.320218e-01	k: 384090	n:1660000
KS ci ratio: 1.118673e-01	ci left: 6.978003e-04	ci right 7.810659e-04	k: 1226	n:1660000
C5orf36   1660000 perm   1664 sec   (997 perm/sec)   p_kst 7.385542e-04   p_cons 2.313795e-01   p_joint 2.310843e-03

Joint ci ratio: 6.302984e-02	ci left: 2.237931e-03	ci right 2.384163e-03	k: 3858	n:1670000
Cons ci ratio: 5.528537e-03	ci left: 2.307486e-01	ci right 2.320284e-01	k: 386418	n:1670000
KS ci ratio: 1.115496e-01	ci left: 6.976964e-04	ci right 7.806975e-04	k: 1233	n:1670000
C5orf36   1670000 perm   1681 sec   (993 perm/sec)   p_kst 7.383234e-04   p_cons 2.313880e-01   p_joint 2.310180e-03

Joint ci ratio: 6.339354e-02	ci left: 2.198832e-03	ci right 2.343368e-03	k: 3814	n:1680000
Cons ci ratio: 5.512527e-03	ci left: 2.307202e-01	ci right 2.319962e-01	k: 388681	n:1680000
KS ci ratio: 1.113243e-01	ci left: 6.964366e-04	ci right 7.791096e-04	k: 1238	n:1680000
C5orf36   1680000 perm   1699 sec   (989 perm/sec)   p_kst 7.369048e-04   p_cons 2.313577e-01   p_joint 2.270238e-03

Joint ci ratio: 6.414831e-02	ci left: 2.133996e-03	ci right 2.276002e-03	k: 3725	n:1690000
Cons ci ratio: 5.496766e-03	ci left: 2.306851e-01	ci right 2.319572e-01	k: 390932	n:1690000
KS ci ratio: 1.112348e-01	ci left: 6.934661e-04	ci right 7.757160e-04	k: 1240	n:1690000
C5orf36   1690000 perm   1717 sec   (985 perm/sec)   p_kst 7.337278e-04   p_cons 2.313207e-01   p_joint 2.204142e-03

Joint ci ratio: 6.391705e-02	ci left: 2.137071e-03	ci right 2.278751e-03	k: 3752	n:1700000
Cons ci ratio: 5.480659e-03	ci left: 2.306816e-01	ci right 2.319499e-01	k: 393236	n:1700000
KS ci ratio: 1.106565e-01	ci left: 6.968219e-04	ci right 7.790120e-04	k: 1253	n:1700000
C5orf36   1700000 perm   1734 sec   (980 perm/sec)   p_kst 7.370588e-04   p_cons 2.313153e-01   p_joint 2.207059e-03

Joint ci ratio: 6.374746e-02	ci left: 2.136083e-03	ci right 2.277307e-03	k: 3772	n:1710000
Cons ci ratio: 5.464019e-03	ci left: 2.307219e-01	ci right 2.319866e-01	k: 395615	n:1710000
KS ci ratio: 1.102178e-01	ci left: 6.984333e-04	ci right 7.804658e-04	k: 1263	n:1710000
C5orf36   1710000 perm   1752 sec   (976 perm/sec)   p_kst 7.385965e-04   p_cons 2.313538e-01   p_joint 2.205848e-03

Joint ci ratio: 6.400339e-02	ci left: 2.106500e-03	ci right 2.246348e-03	k: 3742	n:1720000
Cons ci ratio: 5.448197e-03	ci left: 2.307182e-01	ci right 2.319792e-01	k: 397919	n:1720000
KS ci ratio: 1.100006e-01	ci left: 6.971996e-04	ci right 7.789152e-04	k: 1268	n:1720000
C5orf36   1720000 perm   1770 sec   (972 perm/sec)   p_kst 7.372093e-04   p_cons 2.313483e-01   p_joint 2.175581e-03

Joint ci ratio: 6.449783e-02	ci left: 2.061903e-03	ci right 2.199888e-03	k: 3685	n:1730000
Cons ci ratio: 5.432141e-03	ci left: 2.307388e-01	ci right 2.319962e-01	k: 400265	n:1730000
KS ci ratio: 1.098709e-01	ci left: 6.948559e-04	ci right 7.761946e-04	k: 1271	n:1730000
C5orf36   1730000 perm   1788 sec   (967 perm/sec)   p_kst 7.346821e-04   p_cons 2.313671e-01   p_joint 2.130058e-03

Joint ci ratio: 6.434969e-02	ci left: 2.059666e-03	ci right 2.197172e-03	k: 3702	n:1740000
Cons ci ratio: 5.415727e-03	ci left: 2.307919e-01	ci right 2.320458e-01	k: 402668	n:1740000
KS ci ratio: 1.095698e-01	ci left: 6.947750e-04	ci right 7.758671e-04	k: 1278	n:1740000
C5orf36   1740000 perm   1806 sec   (963 perm/sec)   p_kst 7.344828e-04   p_cons 2.314184e-01   p_joint 2.127586e-03

Joint ci ratio: 6.419392e-02	ci left: 2.058017e-03	ci right 2.195068e-03	k: 3720	n:1750000
Cons ci ratio: 5.400649e-03	ci left: 2.307662e-01	ci right 2.320164e-01	k: 404934	n:1750000
KS ci ratio: 1.092712e-01	ci left: 6.946954e-04	ci right 7.755430e-04	k: 1285	n:1750000
C5orf36   1750000 perm   1824 sec   (959 perm/sec)   p_kst 7.342857e-04   p_cons 2.313909e-01   p_joint 2.125714e-03

Joint ci ratio: 6.398785e-02	ci left: 2.059741e-03	ci right 2.196451e-03	k: 3744	n:1760000
Cons ci ratio: 5.386075e-03	ci left: 2.307158e-01	ci right 2.319624e-01	k: 407156	n:1760000
KS ci ratio: 1.089751e-01	ci left: 6.946170e-04	ci right 7.752223e-04	k: 1292	n:1760000
C5orf36   1760000 perm   1842 sec   (955 perm/sec)   p_kst 7.340909e-04   p_cons 2.313386e-01   p_joint 2.127273e-03

Joint ci ratio: 6.391985e-02	ci left: 2.052552e-03	ci right 2.188634e-03	k: 3752	n:1770000
Cons ci ratio: 5.370262e-03	ci left: 2.307557e-01	ci right 2.319988e-01	k: 409537	n:1770000
KS ci ratio: 1.086395e-01	ci left: 6.950894e-04	ci right 7.754852e-04	k: 1300	n:1770000
C5orf36   1770000 perm   1861 sec   (951 perm/sec)   p_kst 7.344633e-04   p_cons 2.313768e-01   p_joint 2.119774e-03

Joint ci ratio: 6.376717e-02	ci left: 2.050971e-03	ci right 2.186612e-03	k: 3770	n:1780000
Cons ci ratio: 5.354790e-03	ci left: 2.307817e-01	ci right 2.320214e-01	k: 411894	n:1780000
KS ci ratio: 1.084314e-01	ci left: 6.939171e-04	ci right 7.740138e-04	k: 1305	n:1780000
C5orf36   1780000 perm   1879 sec   (947 perm/sec)   p_kst 7.331461e-04   p_cons 2.314011e-01   p_joint 2.117978e-03

Joint ci ratio: 6.363241e-02	ci left: 2.048309e-03	ci right 2.183477e-03	k: 3786	n:1790000
Cons ci ratio: 5.340374e-03	ci left: 2.307461e-01	ci right 2.319822e-01	k: 414141	n:1790000
KS ci ratio: 1.082245e-01	ci left: 6.927581e-04	ci right 7.725587e-04	k: 1310	n:1790000
C5orf36   1790000 perm   1897 sec   (943 perm/sec)   p_kst 7.318436e-04   p_cons 2.313637e-01   p_joint 2.115084e-03

Joint ci ratio: 6.430849e-02	ci left: 1.993741e-03	ci right 2.126758e-03	k: 3707	n:1800000
Cons ci ratio: 5.326090e-03	ci left: 2.307097e-01	ci right 2.319423e-01	k: 416386	n:1800000
KS ci ratio: 1.079367e-01	ci left: 6.926932e-04	ci right 7.722607e-04	k: 1317	n:1800000
C5orf36   1800000 perm   1916 sec   (940 perm/sec)   p_kst 7.316667e-04   p_cons 2.313256e-01   p_joint 2.059444e-03

Joint ci ratio: 6.412715e-02	ci left: 1.994142e-03	ci right 2.126796e-03	k: 3728	n:1810000
Cons ci ratio: 5.311639e-03	ci left: 2.306925e-01	ci right 2.319216e-01	k: 418665	n:1810000
KS ci ratio: 1.077326e-01	ci left: 6.915541e-04	ci right 7.708310e-04	k: 1322	n:1810000
C5orf36   1810000 perm   1934 sec   (936 perm/sec)   p_kst 7.303867e-04   p_cons 2.313066e-01   p_joint 2.059669e-03

Joint ci ratio: 6.495306e-02	ci left: 1.932368e-03	ci right 2.062631e-03	k: 3634	n:1820000
Cons ci ratio: 5.297691e-03	ci left: 2.306497e-01	ci right 2.318754e-01	k: 420897	n:1820000
KS ci ratio: 1.075702e-01	ci left: 6.898929e-04	ci right 7.688526e-04	k: 1326	n:1820000
C5orf36   1820000 perm   1953 sec   (932 perm/sec)   p_kst 7.285714e-04   p_cons 2.312621e-01   p_joint 1.996703e-03

Joint ci ratio: 6.472190e-02	ci left: 1.935786e-03	ci right 2.065798e-03	k: 3660	n:1830000
Cons ci ratio: 5.282998e-03	ci left: 2.306647e-01	ci right 2.318870e-01	k: 423234	n:1830000
KS ci ratio: 1.072474e-01	ci left: 6.903772e-04	ci right 7.691402e-04	k: 1334	n:1830000
C5orf36   1830000 perm   1972 sec   (928 perm/sec)   p_kst 7.289617e-04   p_cons 2.312754e-01   p_joint 2.000000e-03

Joint ci ratio: 6.025269e-02	ci left: 2.225944e-03	ci right 2.364760e-03	k: 4222	n:1840000
Cons ci ratio: 5.268089e-03	ci left: 2.307023e-01	ci right 2.319214e-01	k: 425613	n:1840000
KS ci ratio: 1.069674e-01	ci left: 6.903275e-04	ci right 7.688663e-04	k: 1341	n:1840000
C5orf36   1840000 perm   1990 sec   (924 perm/sec)   p_kst 7.288043e-04   p_cons 2.313114e-01   p_joint 2.294565e-03

Joint ci ratio: 6.010347e-02	ci left: 2.225092e-03	ci right 2.363500e-03	k: 4243	n:1850000
Cons ci ratio: 5.253561e-03	ci left: 2.307222e-01	ci right 2.319381e-01	k: 427960	n:1850000
KS ci ratio: 1.067687e-01	ci left: 6.892265e-04	ci right 7.674852e-04	k: 1346	n:1850000
C5orf36   1850000 perm   2009 sec   (921 perm/sec)   p_kst 7.275676e-04   p_cons 2.313297e-01   p_joint 2.293514e-03

Joint ci ratio: 5.993423e-02	ci left: 2.225839e-03	ci right 2.363890e-03	k: 4267	n:1860000
Cons ci ratio: 5.239058e-03	ci left: 2.307484e-01	ci right 2.319610e-01	k: 430319	n:1860000
KS ci ratio: 1.064137e-01	ci left: 6.902307e-04	ci right 7.683266e-04	k: 1355	n:1860000
C5orf36   1860000 perm   2028 sec   (917 perm/sec)   p_kst 7.284946e-04   p_cons 2.313543e-01   p_joint 2.294086e-03

Joint ci ratio: 5.973851e-02	ci left: 2.228686e-03	ci right 2.366446e-03	k: 4295	n:1870000
Cons ci ratio: 5.224855e-03	ci left: 2.307620e-01	ci right 2.319714e-01	k: 432655	n:1870000
KS ci ratio: 1.061401e-01	ci left: 6.901834e-04	ci right 7.680607e-04	k: 1362	n:1870000
C5orf36   1870000 perm   2046 sec   (914 perm/sec)   p_kst 7.283422e-04   p_cons 2.313663e-01   p_joint 2.296791e-03

Joint ci ratio: 5.962076e-02	ci left: 2.225738e-03	ci right 2.363036e-03	k: 4312	n:1880000
Cons ci ratio: 5.210992e-03	ci left: 2.307601e-01	ci right 2.319663e-01	k: 434962	n:1880000
KS ci ratio: 1.059848e-01	ci left: 6.885834e-04	ci right 7.661594e-04	k: 1366	n:1880000
C5orf36   1880000 perm   2066 sec   (910 perm/sec)   p_kst 7.265957e-04   p_cons 2.313628e-01   p_joint 2.293617e-03

Joint ci ratio: 6.134137e-02	ci left: 2.089936e-03	ci right 2.222708e-03	k: 4074	n:1890000
Cons ci ratio: 5.197294e-03	ci left: 2.307545e-01	ci right 2.319574e-01	k: 437262	n:1890000
KS ci ratio: 1.057530e-01	ci left: 6.880307e-04	ci right 7.653643e-04	k: 1372	n:1890000
C5orf36   1890000 perm   2085 sec   (906 perm/sec)   p_kst 7.259259e-04   p_cons 2.313556e-01   p_joint 2.155556e-03

Joint ci ratio: 6.303868e-02	ci left: 1.967015e-03	ci right 2.095563e-03	k: 3858	n:1900000
Cons ci ratio: 5.183672e-03	ci left: 2.307511e-01	ci right 2.319508e-01	k: 439566	n:1900000
KS ci ratio: 1.056378e-01	ci left: 6.859466e-04	ci right 7.629567e-04	k: 1375	n:1900000
C5orf36   1900000 perm   2104 sec   (903 perm/sec)   p_kst 7.236842e-04   p_cons 2.313505e-01   p_joint 2.030526e-03

Joint ci ratio: 6.277873e-02	ci left: 1.973207e-03	ci right 2.101608e-03	k: 3890	n:1910000
Cons ci ratio: 5.170309e-03	ci left: 2.307372e-01	ci right 2.319338e-01	k: 441850	n:1910000
KS ci ratio: 1.051043e-01	ci left: 6.894920e-04	ci right 7.664851e-04	k: 1389	n:1910000
C5orf36   1910000 perm   2124 sec   (899 perm/sec)   p_kst 7.272251e-04   p_cons 2.313351e-01   p_joint 2.036649e-03

Joint ci ratio: 6.265816e-02	ci left: 1.970620e-03	ci right 2.098598e-03	k: 3905	n:1920000
Cons ci ratio: 5.156920e-03	ci left: 2.307323e-01	ci right 2.319258e-01	k: 444151	n:1920000
KS ci ratio: 1.048406e-01	ci left: 6.894510e-04	ci right 7.662345e-04	k: 1396	n:1920000
C5orf36   1920000 perm   2144 sec   (896 perm/sec)   p_kst 7.270833e-04   p_cons 2.313286e-01   p_joint 2.033854e-03

Joint ci ratio: 6.249039e-02	ci left: 1.971120e-03	ci right 2.098775e-03	k: 3926	n:1930000
Cons ci ratio: 5.144092e-03	ci left: 2.306959e-01	ci right 2.318862e-01	k: 446391	n:1930000
KS ci ratio: 1.045417e-01	ci left: 6.899153e-04	ci right 7.665179e-04	k: 1404	n:1930000
C5orf36   1930000 perm   2163 sec   (892 perm/sec)   p_kst 7.274611e-04   p_cons 2.312907e-01   p_joint 2.034197e-03

Joint ci ratio: 6.237147e-02	ci left: 1.968571e-03	ci right 2.095809e-03	k: 3941	n:1940000
Cons ci ratio: 5.130482e-03	ci left: 2.307207e-01	ci right 2.319079e-01	k: 448749	n:1940000
KS ci ratio: 1.042084e-01	ci left: 6.908771e-04	ci right 7.673270e-04	k: 1413	n:1940000
C5orf36   1940000 perm   2183 sec   (889 perm/sec)   p_kst 7.283505e-04   p_cons 2.313139e-01   p_joint 2.031443e-03

Joint ci ratio: 6.222959e-02	ci left: 1.967563e-03	ci right 2.094436e-03	k: 3959	n:1950000
Cons ci ratio: 5.116861e-03	ci left: 2.307534e-01	ci right 2.319377e-01	k: 451123	n:1950000
KS ci ratio: 1.040615e-01	ci left: 6.893320e-04	ci right 7.654967e-04	k: 1417	n:1950000
C5orf36   1950000 perm   2203 sec   (885 perm/sec)   p_kst 7.266667e-04   p_cons 2.313451e-01   p_joint 2.030256e-03

Joint ci ratio: 6.205742e-02	ci left: 1.968574e-03	ci right 2.095149e-03	k: 3981	n:1960000
Cons ci ratio: 5.103889e-03	ci left: 2.307481e-01	ci right 2.319293e-01	k: 453423	n:1960000
KS ci ratio: 1.038785e-01	ci left: 6.882997e-04	ci right 7.642085e-04	k: 1422	n:1960000
C5orf36   1960000 perm   2223 sec   (882 perm/sec)   p_kst 7.255102e-04   p_cons 2.313383e-01   p_joint 2.031122e-03

Joint ci ratio: 6.187893e-02	ci left: 1.970076e-03	ci right 2.096370e-03	k: 4004	n:1970000
Cons ci ratio: 5.090057e-03	ci left: 2.308097e-01	ci right 2.319880e-01	k: 455855	n:1970000
KS ci ratio: 1.036966e-01	ci left: 6.872779e-04	ci right 7.629332e-04	k: 1427	n:1970000
C5orf36   1970000 perm   2243 sec   (878 perm/sec)   p_kst 7.243655e-04   p_cons 2.313985e-01   p_joint 2.032487e-03

Joint ci ratio: 6.170197e-02	ci left: 1.971563e-03	ci right 2.097578e-03	k: 4027	n:1980000
Cons ci ratio: 5.076582e-03	ci left: 2.308536e-01	ci right 2.320290e-01	k: 458253	n:1980000
KS ci ratio: 1.034433e-01	ci left: 6.872506e-04	ci right 7.627069e-04	k: 1434	n:1980000
C5orf36   1980000 perm   2263 sec   (875 perm/sec)   p_kst 7.242424e-04   p_cons 2.314409e-01   p_joint 2.033838e-03

Joint ci ratio: 6.154936e-02	ci left: 1.971551e-03	ci right 2.097242e-03	k: 4047	n:1990000
Cons ci ratio: 5.063048e-03	ci left: 2.309086e-01	ci right 2.320811e-01	k: 460674	n:1990000
KS ci ratio: 1.032637e-01	ci left: 6.862447e-04	ci right 7.614517e-04	k: 1439	n:1990000
C5orf36   1990000 perm   2284 sec   (871 perm/sec)   p_kst 7.231156e-04   p_cons 2.314945e-01   p_joint 2.033668e-03

Joint ci ratio: 6.143572e-02	ci left: 1.969077e-03	ci right 2.094371e-03	k: 4062	n:2000000
Cons ci ratio: 5.050019e-03	ci left: 2.309351e-01	ci right 2.321047e-01	k: 463039	n:2000000
KS ci ratio: 1.028714e-01	ci left: 6.881717e-04	ci right 7.632861e-04	k: 1450	n:2000000
C5orf36   2000000 perm   2304 sec   (868 perm/sec)   p_kst 7.250000e-04   p_cons 2.315195e-01   p_joint 2.031000e-03

Joint ci ratio: 6.255680e-02	ci left: 1.888747e-03	ci right 2.011202e-03	k: 3918	n:2010000
Cons ci ratio: 5.037091e-03	ci left: 2.309613e-01	ci right 2.321281e-01	k: 465404	n:2010000
KS ci ratio: 1.025890e-01	ci left: 6.886258e-04	ci right 7.635710e-04	k: 1458	n:2010000
C5orf36   2010000 perm   2324 sec   (865 perm/sec)   p_kst 7.253731e-04   p_cons 2.315443e-01   p_joint 1.949254e-03

Joint ci ratio: 6.240571e-02	ci left: 1.888656e-03	ci right 2.010799e-03	k: 3937	n:2020000
Cons ci ratio: 5.025044e-03	ci left: 2.309318e-01	ci right 2.320957e-01	k: 467657	n:2020000
KS ci ratio: 1.023787e-01	ci left: 6.881109e-04	ci right 7.628374e-04	k: 1464	n:2020000
C5orf36   2020000 perm   2344 sec   (862 perm/sec)   p_kst 7.247525e-04   p_cons 2.315134e-01   p_joint 1.949010e-03

Joint ci ratio: 6.230306e-02	ci left: 1.885656e-03	ci right 2.007397e-03	k: 3950	n:2030000
Cons ci ratio: 5.012958e-03	ci left: 2.309115e-01	ci right 2.320725e-01	k: 469928	n:2030000
KS ci ratio: 1.021697e-01	ci left: 6.876013e-04	ci right 7.621108e-04	k: 1470	n:2030000
C5orf36   2030000 perm   2365 sec   (858 perm/sec)   p_kst 7.241379e-04   p_cons 2.314916e-01   p_joint 1.945813e-03

Joint ci ratio: 6.206771e-02	ci left: 1.890890e-03	ci right 2.012491e-03	k: 3980	n:2040000
Cons ci ratio: 5.000807e-03	ci left: 2.309022e-01	ci right 2.320603e-01	k: 472221	n:2040000
KS ci ratio: 1.017554e-01	ci left: 6.899631e-04	ci right 7.644072e-04	k: 1482	n:2040000
C5orf36   2040000 perm   2386 sec   (855 perm/sec)   p_kst 7.264706e-04   p_cons 2.314809e-01   p_joint 1.950980e-03

Joint ci ratio: 6.195117e-02	ci left: 1.888870e-03	ci right 2.010105e-03	k: 3995	n:2050000
Cons ci ratio: 4.988184e-03	ci left: 2.309330e-01	ci right 2.320883e-01	k: 474596	n:2050000
KS ci ratio: 1.014480e-01	ci left: 6.908761e-04	ci right 7.651802e-04	k: 1491	n:2050000
C5orf36   2050000 perm   2406 sec   (852 perm/sec)   p_kst 7.273171e-04   p_cons 2.315102e-01   p_joint 1.948780e-03

Joint ci ratio: 6.256628e-02	ci left: 1.842425e-03	ci right 1.961895e-03	k: 3917	n:2060000
Cons ci ratio: 4.976110e-03	ci left: 2.309309e-01	ci right 2.320834e-01	k: 476904	n:2060000
KS ci ratio: 1.012109e-01	ci left: 6.908343e-04	ci right 7.649498e-04	k: 1498	n:2060000
C5orf36   2060000 perm   2427 sec   (849 perm/sec)   p_kst 7.271845e-04   p_cons 2.315068e-01   p_joint 1.901456e-03

Joint ci ratio: 6.239925e-02	ci left: 1.843511e-03	ci right 1.962721e-03	k: 3938	n:2070000
Cons ci ratio: 4.963955e-03	ci left: 2.309410e-01	ci right 2.320907e-01	k: 479237	n:2070000
KS ci ratio: 1.010762e-01	ci left: 6.893804e-04	ci right 7.632357e-04	k: 1502	n:2070000
C5orf36   2070000 perm   2448 sec   (846 perm/sec)   p_kst 7.256039e-04   p_cons 2.315155e-01   p_joint 1.902415e-03

Joint ci ratio: 6.225718e-02	ci left: 1.843167e-03	ci right 1.962073e-03	k: 3956	n:2080000
Cons ci ratio: 4.951989e-03	ci left: 2.309437e-01	ci right 2.320907e-01	k: 481555	n:2080000
KS ci ratio: 1.008082e-01	ci left: 6.898151e-04	ci right 7.635095e-04	k: 1510	n:2080000
C5orf36   2080000 perm   2469 sec   (843 perm/sec)   p_kst 7.259615e-04   p_cons 2.315168e-01   p_joint 1.901923e-03

Joint ci ratio: 6.205354e-02	ci left: 1.846595e-03	ci right 1.965319e-03	k: 3982	n:2090000
Cons ci ratio: 4.939850e-03	ci left: 2.309651e-01	ci right 2.321093e-01	k: 483912	n:2090000
KS ci ratio: 1.003772e-01	ci left: 6.925782e-04	ci right 7.662328e-04	k: 1523	n:2090000
C5orf36   2090000 perm   2489 sec   (840 perm/sec)   p_kst 7.287081e-04   p_cons 2.315368e-01   p_joint 1.905263e-03

Joint ci ratio: 6.185189e-02	ci left: 1.849990e-03	ci right 1.968533e-03	k: 4008	n:2100000
Cons ci ratio: 4.927813e-03	ci left: 2.309853e-01	ci right 2.321268e-01	k: 486267	n:2100000
KS ci ratio: 1.000168e-01	ci left: 6.943871e-04	ci right 7.679534e-04	k: 1534	n:2100000
C5orf36   2100000 perm   2511 sec   (836 perm/sec)   p_kst 7.304762e-04   p_cons 2.315557e-01   p_joint 1.908571e-03

Joint ci ratio: 6.210099e-02	ci left: 1.826291e-03	ci right 1.943803e-03	k: 3976	n:2110000
Cons ci ratio: 4.916348e-03	ci left: 2.309703e-01	ci right 2.321091e-01	k: 488548	n:2110000
KS ci ratio: 9.985437e-02	ci left: 6.934066e-04	ci right 7.667427e-04	k: 1539	n:2110000
C5orf36   2110000 perm   2533 sec   (833 perm/sec)   p_kst 7.293839e-04   p_cons 2.315393e-01   p_joint 1.884360e-03

Outputting figure to mutsig2_images.part000000000026/C5orf36.5_3909_2110000_0.00072938_0.23154_0.0018844.png
                gene_name: C5orf36
               theta_stop: 0.100 
                    nperm: 2110000 
                     p_ks: 0.00073 
        ci_ks_bounds_left: 0.00069 
       ci_ks_bounds_right: 0.00077 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.0019 
     ci_joint_bounds_left: 0.0018 
    ci_joint_bounds_right: 0.0019 

Current progress: 29 percent done.
C6orf211
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.279465e-02	ci left: 7.386615e-01	ci right 7.557942e-01	k: 7473	n:10000
Cons ci ratio: 1.582507e-02	ci left: 8.529423e-01	ci right 8.666473e-01	k: 8599	n:10000
KS ci ratio: 3.467933e-02	ci left: 5.511066e-01	ci right 5.706579e-01	k: 5609	n:10000
C6orf211   10000 perm   2 sec   (5420 perm/sec)   p_kst 5.609000e-01   p_cons 8.599000e-01   p_joint 7.473000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf211.5_1346_10000_0.5609_0.8599_0.7473.png
                gene_name: C6orf211
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 31 percent done.
C6orf89
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.761920e-02	ci left: 3.071901e-01	ci right 3.255170e-01	k: 3163	n:10000
Cons ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
KS ci ratio: 1.353006e-02	ci left: 8.873914e-01	ci right 8.995783e-01	k: 8936	n:10000
C6orf89   10000 perm   2 sec   (5401 perm/sec)   p_kst 8.936000e-01   p_cons 1.072000e-01   p_joint 3.163000e-01

Joint ci ratio: 3.417942e-02	ci left: 3.899104e-01	ci right 4.035196e-01	k: 7934	n:20000
Cons ci ratio: 7.850234e-02	ci left: 1.064817e-01	ci right 1.152318e-01	k: 2216	n:20000
KS ci ratio: 9.520622e-03	ci left: 8.901601e-01	ci right 8.987249e-01	k: 17890	n:20000
C6orf89   20000 perm   4 sec   (4753 perm/sec)   p_kst 8.945000e-01   p_cons 1.108000e-01   p_joint 3.967000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf89.5_1097_20000_0.8945_0.1108_0.3967.png
                gene_name: C6orf89
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 33 percent done.
C7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.576934e-02	ci left: 5.357789e-01	ci right 5.553945e-01	k: 5456	n:10000
Cons ci ratio: 4.365513e-02	ci left: 4.365237e-01	ci right 4.561076e-01	k: 4463	n:10000
KS ci ratio: 3.530301e-02	ci left: 5.422895e-01	ci right 5.618801e-01	k: 5521	n:10000
C7   10000 perm   2 sec   (5049 perm/sec)   p_kst 5.521000e-01   p_cons 4.463000e-01   p_joint 5.456000e-01

Outputting figure to mutsig2_images.part000000000026/C7.5_2604_10000_0.5521_0.4463_0.5456.png
                gene_name: C7
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 36 percent done.
C7orf25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.941074e-02	ci left: 7.951683e-01	ci right 8.108548e-01	k: 8031	n:10000
Cons ci ratio: 3.127486e-02	ci left: 6.013635e-01	ci right 6.205718e-01	k: 6110	n:10000
KS ci ratio: 2.459607e-02	ci left: 7.085635e-01	ci right 7.263097e-01	k: 7175	n:10000
C7orf25   10000 perm   2 sec   (5190 perm/sec)   p_kst 7.175000e-01   p_cons 6.110000e-01   p_joint 8.031000e-01

Outputting figure to mutsig2_images.part000000000026/C7orf25.5_1448_10000_0.7175_0.611_0.8031.png
                gene_name: C7orf25
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 38 percent done.
C6orf146
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.949951e-02	ci left: 6.288939e-01	ci right 6.478255e-01	k: 6384	n:10000
Cons ci ratio: 8.056948e-02	ci left: 1.836317e-01	ci right 1.991485e-01	k: 1913	n:10000
KS ci ratio: 2.348876e-02	ci left: 7.270405e-01	ci right 7.444219e-01	k: 7358	n:10000
C6orf146   10000 perm   2 sec   (5612 perm/sec)   p_kst 7.358000e-01   p_cons 1.913000e-01   p_joint 6.384000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf146.4_1551_10000_0.7358_0.1913_0.6384.png
                gene_name: C6orf146
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 40 percent done.
C6orf150
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.085277e-01	ci left: 1.091029e-01	ci right 1.217221e-01	k: 1153	n:10000
Cons ci ratio: 1.480595e-01	ci left: 6.063148e-02	ci right 7.042348e-02	k: 654	n:10000
KS ci ratio: 8.033598e-02	ci left: 1.845176e-01	ci right 2.000620e-01	k: 1922	n:10000
C6orf150   10000 perm   2 sec   (5384 perm/sec)   p_kst 1.922000e-01   p_cons 6.540000e-02   p_joint 1.153000e-01

Joint ci ratio: 9.180014e-02	ci left: 7.970183e-02	ci right 8.741975e-02	k: 1670	n:20000
Cons ci ratio: 1.014602e-01	ci left: 6.591574e-02	ci right 7.301005e-02	k: 1388	n:20000
KS ci ratio: 5.560159e-02	ci left: 1.934859e-01	ci right 2.046018e-01	k: 3980	n:20000
C6orf150   20000 perm   4 sec   (4899 perm/sec)   p_kst 1.990000e-01   p_cons 6.940000e-02   p_joint 8.350000e-02

Joint ci ratio: 8.354483e-02	ci left: 6.550338e-02	ci right 7.124721e-02	k: 2050	n:30000
Cons ci ratio: 8.326194e-02	ci left: 6.592830e-02	ci right 7.168887e-02	k: 2063	n:30000
KS ci ratio: 4.542007e-02	ci left: 1.943626e-01	ci right 2.034291e-01	k: 5966	n:30000
C6orf150   30000 perm   6 sec   (4691 perm/sec)   p_kst 1.988667e-01   p_cons 6.876667e-02   p_joint 6.833333e-02

Outputting figure to mutsig2_images.part000000000026/C6orf150.4_1589_30000_0.19887_0.068767_0.068333.png
                gene_name: C6orf150
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.071 

Current progress: 42 percent done.
C7orf16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.445811e-02	ci left: 3.319049e-01	ci right 3.505876e-01	k: 3412	n:10000
Cons ci ratio: 6.962823e-03	ci left: 9.659399e-01	ci right 9.727830e-01	k: 9695	n:10000
KS ci ratio: 7.750296e-02	ci left: 1.957449e-01	ci right 2.116281e-01	k: 2036	n:10000
C7orf16   10000 perm   2 sec   (6331 perm/sec)   p_kst 2.036000e-01   p_cons 9.695000e-01   p_joint 3.412000e-01

Outputting figure to mutsig2_images.part000000000026/C7orf16.4_484_10000_0.2036_0.9695_0.3412.png
                gene_name: C7orf16
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 44 percent done.
C5orf4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.155892e-02	ci left: 1.477618e-01	ci right 1.620398e-01	k: 1548	n:10000
Cons ci ratio: 4.144526e-02	ci left: 4.622748e-01	ci right 4.819415e-01	k: 4721	n:10000
KS ci ratio: 9.291121e-02	ci left: 1.440348e-01	ci right 1.581691e-01	k: 1510	n:10000
C5orf4   10000 perm   2 sec   (6292 perm/sec)   p_kst 1.510000e-01   p_cons 4.721000e-01   p_joint 1.548000e-01

Outputting figure to mutsig2_images.part000000000026/C5orf4.3_1034_10000_0.151_0.4721_0.1548.png
                gene_name: C5orf4
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 47 percent done.
C5orf49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.904749e-02	ci left: 6.360330e-01	ci right 6.548822e-01	k: 6455	n:10000
Cons ci ratio: 8.324248e-02	ci left: 1.738909e-01	ci right 1.890951e-01	k: 1814	n:10000
KS ci ratio: 4.696672e-02	ci left: 4.008357e-01	ci right 4.202165e-01	k: 4105	n:10000
C5orf49   10000 perm   2 sec   (6101 perm/sec)   p_kst 4.105000e-01   p_cons 1.814000e-01   p_joint 6.455000e-01

Outputting figure to mutsig2_images.part000000000026/C5orf49.3_456_10000_0.4105_0.1814_0.6455.png
                gene_name: C5orf49
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 49 percent done.
C6orf118
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.955702e-02	ci left: 6.279891e-01	ci right 6.469308e-01	k: 6375	n:10000
KS ci ratio: 2.609546e-02	ci left: 6.837536e-01	ci right 7.019339e-01	k: 6929	n:10000
C6orf118   10000 perm   2 sec   (5936 perm/sec)   p_kst 6.929000e-01   p_cons 6.375000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf118.3_1446_10000_0.6929_0.6375_1.png
                gene_name: C6orf118
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
C6orf203
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.059551e-02	ci left: 1.835333e-01	ci right 1.990470e-01	k: 1912	n:10000
Cons ci ratio: 2.505034e-01	ci left: 2.090184e-02	ci right 2.697984e-02	k: 238	n:10000
KS ci ratio: 5.877102e-02	ci left: 2.987602e-01	ci right 3.169519e-01	k: 3078	n:10000
C6orf203   10000 perm   2 sec   (6070 perm/sec)   p_kst 3.078000e-01   p_cons 2.380000e-02   p_joint 1.912000e-01

Joint ci ratio: 4.374250e-02	ci left: 2.801907e-01	ci right 2.927714e-01	k: 5729	n:20000
Cons ci ratio: 1.713490e-01	ci left: 2.331158e-02	ci right 2.772784e-02	k: 509	n:20000
KS ci ratio: 4.171403e-02	ci left: 2.998654e-01	ci right 3.126909e-01	k: 6125	n:20000
C6orf203   20000 perm   4 sec   (5351 perm/sec)   p_kst 3.062500e-01   p_cons 2.545000e-02   p_joint 2.864500e-01

Joint ci ratio: 3.603866e-02	ci left: 2.777083e-01	ci right 2.879337e-01	k: 8484	n:30000
Cons ci ratio: 1.418210e-01	ci left: 2.306968e-02	ci right 2.662315e-02	k: 744	n:30000
KS ci ratio: 3.390242e-02	ci left: 3.030102e-01	ci right 3.134936e-01	k: 9247	n:30000
C6orf203   30000 perm   6 sec   (5032 perm/sec)   p_kst 3.082333e-01   p_cons 2.480000e-02   p_joint 2.828000e-01

Joint ci ratio: 3.185815e-02	ci left: 2.701805e-01	ci right 2.789523e-01	k: 10982	n:40000
Cons ci ratio: 1.230967e-01	ci left: 2.320106e-02	ci right 2.626847e-02	k: 988	n:40000
KS ci ratio: 2.935292e-02	ci left: 3.038259e-01	ci right 3.129020e-01	k: 12334	n:40000
C6orf203   40000 perm   8 sec   (4868 perm/sec)   p_kst 3.083500e-01   p_cons 2.470000e-02   p_joint 2.745500e-01

Joint ci ratio: 2.861366e-02	ci left: 2.689988e-01	ci right 2.768276e-01	k: 13645	n:50000
Cons ci ratio: 1.097038e-01	ci left: 2.353237e-02	ci right 2.628317e-02	k: 1244	n:50000
KS ci ratio: 2.631913e-02	ci left: 3.032572e-01	ci right 3.113652e-01	k: 15365	n:50000
C6orf203   50000 perm   11 sec   (4721 perm/sec)   p_kst 3.073000e-01   p_cons 2.488000e-02   p_joint 2.729000e-01

Joint ci ratio: 3.246888e-02	ci left: 1.922669e-01	ci right 1.986292e-01	k: 11726	n:60000
Cons ci ratio: 1.002489e-01	ci left: 2.360285e-02	ci right 2.611006e-02	k: 1490	n:60000
KS ci ratio: 2.398484e-02	ci left: 3.043402e-01	ci right 3.117450e-01	k: 18482	n:60000
C6orf203   60000 perm   13 sec   (4617 perm/sec)   p_kst 3.080333e-01   p_cons 2.483333e-02   p_joint 1.954333e-01

Joint ci ratio: 2.998479e-02	ci left: 1.932920e-01	ci right 1.991903e-01	k: 13736	n:70000
Cons ci ratio: 9.233732e-02	ci left: 2.393979e-02	ci right 2.627123e-02	k: 1756	n:70000
KS ci ratio: 2.222389e-02	ci left: 3.042676e-01	ci right 3.111198e-01	k: 21538	n:70000
C6orf203   70000 perm   16 sec   (4482 perm/sec)   p_kst 3.076857e-01   p_cons 2.508571e-02   p_joint 1.962286e-01

Outputting figure to mutsig2_images.part000000000026/C6orf203.3_754_70000_0.30769_0.025086_0.19623.png
                gene_name: C6orf203
               theta_stop: 0.092 
                    nperm: 70000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 53 percent done.
C6orf222
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
Cons ci ratio: 2.158746e-02	ci left: 7.588910e-01	ci right 7.755531e-01	k: 7673	n:10000
KS ci ratio: 5.938332e-02	ci left: 2.943978e-01	ci right 3.125168e-01	k: 3034	n:10000
C6orf222   10000 perm   2 sec   (5568 perm/sec)   p_kst 3.034000e-01   p_cons 7.673000e-01   p_joint 4.564000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf222.3_2003_10000_0.3034_0.7673_0.4564.png
                gene_name: C6orf222
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 56 percent done.
C6orf58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.277544e-02	ci left: 5.787803e-01	ci right 5.981681e-01	k: 5885	n:10000
Cons ci ratio: 1.882593e-02	ci left: 8.048110e-01	ci right 8.202065e-01	k: 8126	n:10000
KS ci ratio: 4.801080e-02	ci left: 3.902789e-01	ci right 4.095794e-01	k: 3999	n:10000
C6orf58   10000 perm   2 sec   (6336 perm/sec)   p_kst 3.999000e-01   p_cons 8.126000e-01   p_joint 5.885000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf58.3_1017_10000_0.3999_0.8126_0.5885.png
                gene_name: C6orf58
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 58 percent done.
C6orf81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.555493e-02	ci left: 8.571254e-01	ci right 8.706618e-01	k: 8640	n:10000
Cons ci ratio: 4.506925e-02	ci left: 4.208664e-01	ci right 4.403740e-01	k: 4306	n:10000
KS ci ratio: 2.714896e-02	ci left: 6.665257e-01	ci right 6.849718e-01	k: 6758	n:10000
C6orf81   10000 perm   1 sec   (6701 perm/sec)   p_kst 6.758000e-01   p_cons 4.306000e-01   p_joint 8.640000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf81.3_1128_10000_0.6758_0.4306_0.864.png
                gene_name: C6orf81
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 60 percent done.
C5orf30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.114414e-01	ci left: 1.039317e-01	ci right 1.162965e-01	k: 1100	n:10000
KS ci ratio: 1.833676e-01	ci left: 3.968114e-02	ci right 4.778736e-02	k: 436	n:10000
C5orf30   10000 perm   1 sec   (7199 perm/sec)   p_kst 4.360000e-02   p_cons 1.100000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.824457e-02	ci left: 1.071204e-01	ci right 1.158929e-01	k: 2229	n:20000
KS ci ratio: 1.298188e-01	ci left: 4.076302e-02	ci right 4.647062e-02	k: 871	n:20000
C5orf30   20000 perm   3 sec   (6166 perm/sec)   p_kst 4.355000e-02   p_cons 1.114500e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 6.424404e-02	ci left: 1.068421e-01	ci right 1.139669e-01	k: 3311	n:30000
KS ci ratio: 1.078647e-01	ci left: 3.988782e-02	ci right 4.446804e-02	k: 1264	n:30000
C5orf30   30000 perm   5 sec   (5749 perm/sec)   p_kst 4.213333e-02   p_cons 1.103667e-01   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 5.537671e-02	ci left: 1.082337e-01	ci right 1.144228e-01	k: 4452	n:40000
KS ci ratio: 9.328885e-02	ci left: 4.029947e-02	ci right 4.426733e-02	k: 1690	n:40000
C5orf30   40000 perm   7 sec   (5528 perm/sec)   p_kst 4.225000e-02   p_cons 1.113000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C5orf30.2_625_40000_0.04225_0.1113_1.png
                gene_name: C5orf30
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
C5orf34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.605201e-02	ci left: 2.018551e-01	ci right 2.179143e-01	k: 2098	n:10000
Cons ci ratio: 8.576435e-02	ci left: 1.653377e-01	ci right 1.802534e-01	k: 1727	n:10000
KS ci ratio: 4.503252e-02	ci left: 4.212652e-01	ci right 4.407750e-01	k: 4310	n:10000
C5orf34   10000 perm   2 sec   (5661 perm/sec)   p_kst 4.310000e-01   p_cons 1.727000e-01   p_joint 2.098000e-01

Outputting figure to mutsig2_images.part000000000026/C5orf34.2_1965_10000_0.431_0.1727_0.2098.png
                gene_name: C5orf34
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 64 percent done.
C5orf35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.363547e-03	ci left: 9.622595e-01	ci right 9.694658e-01	k: 9660	n:10000
Cons ci ratio: 5.555591e-03	ci left: 9.774889e-01	ci right 9.830263e-01	k: 9804	n:10000
KS ci ratio: 3.846421e-02	ci left: 4.995504e-01	ci right 5.192441e-01	k: 5094	n:10000
C5orf35   10000 perm   2 sec   (6574 perm/sec)   p_kst 5.094000e-01   p_cons 9.804000e-01   p_joint 9.660000e-01

Outputting figure to mutsig2_images.part000000000026/C5orf35.2_932_10000_0.5094_0.9804_0.966.png
                gene_name: C5orf35
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 67 percent done.
C5orf51
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.872701e-02	ci left: 8.064357e-01	ci right 8.217809e-01	k: 8142	n:10000
KS ci ratio: 5.320867e-03	ci left: 9.791993e-01	ci right 9.845147e-01	k: 9820	n:10000
C5orf51   10000 perm   1 sec   (6764 perm/sec)   p_kst 9.820000e-01   p_cons 8.142000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C5orf51.2_909_10000_0.982_0.8142_1.png
                gene_name: C5orf51
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
C5orf54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.160472e-02	ci left: 5.963432e-01	ci right 6.155950e-01	k: 6060	n:10000
Cons ci ratio: 7.884357e-03	ci left: 9.572282e-01	ci right 9.649002e-01	k: 9612	n:10000
KS ci ratio: 6.279685e-02	ci left: 2.715119e-01	ci right 2.892162e-01	k: 2803	n:10000
C5orf54   10000 perm   2 sec   (6042 perm/sec)   p_kst 2.803000e-01   p_cons 9.612000e-01   p_joint 6.060000e-01

Outputting figure to mutsig2_images.part000000000026/C5orf54.2_1789_10000_0.2803_0.9612_0.606.png
                gene_name: C5orf54
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 71 percent done.
C6orf136
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.328380e-01	ci left: 7.475563e-02	ci right 8.549047e-02	k: 800	n:10000
Cons ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
KS ci ratio: 1.152409e-01	ci left: 9.769325e-02	ci right 1.097387e-01	k: 1036	n:10000
C6orf136   10000 perm   2 sec   (6420 perm/sec)   p_kst 1.036000e-01   p_cons 2.820000e-02   p_joint 8.000000e-02

Joint ci ratio: 9.566350e-02	ci left: 7.373314e-02	ci right 8.119025e-02	k: 1548	n:20000
Cons ci ratio: 1.631610e-01	ci left: 2.575746e-02	ci right 3.038111e-02	k: 560	n:20000
KS ci ratio: 8.285527e-02	ci left: 9.646450e-02	ci right 1.048520e-01	k: 2012	n:20000
C6orf136   20000 perm   4 sec   (5530 perm/sec)   p_kst 1.006000e-01   p_cons 2.800000e-02   p_joint 7.740000e-02

Joint ci ratio: 1.431066e-01	ci left: 2.265144e-02	ci right 2.617482e-02	k: 731	n:30000
Cons ci ratio: 1.484976e-01	ci left: 2.101211e-02	ci right 2.441452e-02	k: 680	n:30000
KS ci ratio: 6.775757e-02	ci left: 9.695570e-02	ci right 1.037886e-01	k: 3010	n:30000
C6orf136   30000 perm   6 sec   (5234 perm/sec)   p_kst 1.003333e-01   p_cons 2.266667e-02   p_joint 2.436667e-02

Joint ci ratio: 1.154795e-01	ci left: 2.638084e-02	ci right 2.963817e-02	k: 1119	n:40000
Cons ci ratio: 1.286758e-01	ci left: 2.121417e-02	ci right 2.415569e-02	k: 906	n:40000
KS ci ratio: 5.844293e-02	ci left: 9.813759e-02	ci right 1.040705e-01	k: 4043	n:40000
C6orf136   40000 perm   8 sec   (4991 perm/sec)   p_kst 1.010750e-01   p_cons 2.265000e-02   p_joint 2.797500e-02

Joint ci ratio: 1.116981e-01	ci left: 2.269563e-02	ci right 2.540001e-02	k: 1201	n:50000
Cons ci ratio: 1.158120e-01	ci left: 2.110127e-02	ci right 2.371459e-02	k: 1119	n:50000
KS ci ratio: 5.208982e-02	ci left: 9.908362e-02	ci right 1.044027e-01	k: 5086	n:50000
C6orf136   50000 perm   10 sec   (4847 perm/sec)   p_kst 1.017200e-01   p_cons 2.238000e-02   p_joint 2.402000e-02

Joint ci ratio: 9.555458e-02	ci left: 2.597811e-02	ci right 2.860121e-02	k: 1636	n:60000
Cons ci ratio: 1.060449e-01	ci left: 2.108463e-02	ci right 2.346189e-02	k: 1335	n:60000
KS ci ratio: 4.762259e-02	ci left: 9.904514e-02	ci right 1.038935e-01	k: 6087	n:60000
C6orf136   60000 perm   13 sec   (4706 perm/sec)   p_kst 1.014500e-01   p_cons 2.225000e-02   p_joint 2.726667e-02

Joint ci ratio: 8.822533e-02	ci left: 2.621714e-02	ci right 2.865082e-02	k: 1919	n:70000
Cons ci ratio: 9.724672e-02	ci left: 2.158140e-02	ci right 2.380127e-02	k: 1587	n:70000
KS ci ratio: 4.417889e-02	ci left: 9.886206e-02	ci right 1.033425e-01	k: 7076	n:70000
C6orf136   70000 perm   15 sec   (4617 perm/sec)   p_kst 1.010857e-01   p_cons 2.267143e-02   p_joint 2.741429e-02

Outputting figure to mutsig2_images.part000000000026/C6orf136.2_1515_70000_0.10109_0.022671_0.027414.png
                gene_name: C6orf136
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.029 

Current progress: 73 percent done.
C6orf15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.570440e-02	ci left: 1.655342e-01	ci right 1.804568e-01	k: 1729	n:10000
Cons ci ratio: 1.041386e-01	ci left: 1.176005e-01	ci right 1.306194e-01	k: 1240	n:10000
KS ci ratio: 8.516963e-03	ci left: 9.507523e-01	ci right 9.589800e-01	k: 9550	n:10000
C6orf15   10000 perm   2 sec   (6422 perm/sec)   p_kst 9.550000e-01   p_cons 1.240000e-01   p_joint 1.729000e-01

Joint ci ratio: 4.370508e-02	ci left: 2.805384e-01	ci right 2.931237e-01	k: 5736	n:20000
Cons ci ratio: 7.367235e-02	ci left: 1.194130e-01	ci right 1.285966e-01	k: 2479	n:20000
KS ci ratio: 6.012673e-03	ci left: 9.521381e-01	ci right 9.579287e-01	k: 19102	n:20000
C6orf15   20000 perm   4 sec   (5431 perm/sec)   p_kst 9.551000e-01   p_cons 1.239500e-01   p_joint 2.868000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf15.2_986_20000_0.9551_0.12395_0.2868.png
                gene_name: C6orf15
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 76 percent done.
C6orf153
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.052749e-02	ci left: 7.766130e-01	ci right 7.928209e-01	k: 7848	n:10000
Cons ci ratio: 3.731880e-02	ci left: 5.146560e-01	ci right 5.343297e-01	k: 5245	n:10000
KS ci ratio: 2.188948e-02	ci left: 7.538312e-01	ci right 7.706157e-01	k: 7623	n:10000
C6orf153   10000 perm   2 sec   (6590 perm/sec)   p_kst 7.623000e-01   p_cons 5.245000e-01   p_joint 7.848000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf153.2_808_10000_0.7623_0.5245_0.7848.png
                gene_name: C6orf153
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 78 percent done.
C6orf168
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.208232e-02	ci left: 9.076136e-01	ci right 9.187443e-01	k: 9133	n:10000
Cons ci ratio: 4.764275e-02	ci left: 3.939633e-01	ci right 4.132929e-01	k: 4036	n:10000
KS ci ratio: 2.547181e-02	ci left: 6.940369e-01	ci right 7.120447e-01	k: 7031	n:10000
C6orf168   10000 perm   2 sec   (6339 perm/sec)   p_kst 7.031000e-01   p_cons 4.036000e-01   p_joint 9.133000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf168.2_1254_10000_0.7031_0.4036_0.9133.png
                gene_name: C6orf168
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 80 percent done.
C6orf186
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.012259e-01	ci left: 1.237605e-01	ci right 1.370557e-01	k: 1303	n:10000
Cons ci ratio: 3.144643e-01	ci left: 1.289402e-02	ci right 1.779424e-02	k: 152	n:10000
KS ci ratio: 1.711004e-02	ci left: 8.326658e-01	ci right 8.471356e-01	k: 8400	n:10000
C6orf186   10000 perm   2 sec   (6067 perm/sec)   p_kst 8.400000e-01   p_cons 1.520000e-02   p_joint 1.303000e-01

Joint ci ratio: 9.943628e-02	ci left: 6.850386e-02	ci right 7.572114e-02	k: 1441	n:20000
Cons ci ratio: 2.216308e-01	ci left: 1.369190e-02	ci right 1.715108e-02	k: 307	n:20000
KS ci ratio: 1.216992e-02	ci left: 8.332246e-01	ci right 8.434768e-01	k: 16768	n:20000
C6orf186   20000 perm   4 sec   (5404 perm/sec)   p_kst 8.384000e-01   p_cons 1.535000e-02   p_joint 7.205000e-02

Joint ci ratio: 8.562464e-02	ci left: 6.249723e-02	ci right 6.812065e-02	k: 1958	n:30000
Cons ci ratio: 1.827789e-01	ci left: 1.371864e-02	ci right 1.650975e-02	k: 452	n:30000
KS ci ratio: 9.915750e-03	ci left: 8.347579e-01	ci right 8.431096e-01	k: 25169	n:30000
C6orf186   30000 perm   6 sec   (5171 perm/sec)   p_kst 8.389667e-01   p_cons 1.506667e-02   p_joint 6.526667e-02

Joint ci ratio: 9.060815e-02	ci left: 4.267108e-02	ci right 4.674535e-02	k: 1787	n:40000
Cons ci ratio: 1.581589e-01	ci left: 1.392770e-02	ci right 1.634343e-02	k: 604	n:40000
KS ci ratio: 8.607601e-03	ci left: 8.346801e-01	ci right 8.419207e-01	k: 33533	n:40000
C6orf186   40000 perm   8 sec   (5002 perm/sec)   p_kst 8.383250e-01   p_cons 1.510000e-02   p_joint 4.467500e-02

Joint ci ratio: 9.730138e-02	ci left: 2.990816e-02	ci right 3.298656e-02	k: 1571	n:50000
Cons ci ratio: 1.416761e-01	ci left: 1.401069e-02	ci right 1.616614e-02	k: 753	n:50000
KS ci ratio: 7.691591e-03	ci left: 8.353255e-01	ci right 8.417952e-01	k: 41929	n:50000
C6orf186   50000 perm   10 sec   (4843 perm/sec)   p_kst 8.385800e-01   p_cons 1.506000e-02   p_joint 3.142000e-02

Joint ci ratio: 8.964643e-02	ci left: 2.949715e-02	ci right 3.228181e-02	k: 1852	n:60000
Cons ci ratio: 1.292452e-01	ci left: 1.412325e-02	ci right 1.609073e-02	k: 905	n:60000
KS ci ratio: 7.031258e-03	ci left: 8.352286e-01	ci right 8.411386e-01	k: 50292	n:60000
C6orf186   60000 perm   13 sec   (4735 perm/sec)   p_kst 8.382000e-01   p_cons 1.508333e-02   p_joint 3.086667e-02

Joint ci ratio: 8.177187e-02	ci left: 3.048443e-02	ci right 3.309743e-02	k: 2224	n:70000
Cons ci ratio: 1.192008e-01	ci left: 1.430665e-02	ci right 1.613386e-02	k: 1064	n:70000
KS ci ratio: 6.527141e-03	ci left: 8.347173e-01	ci right 8.401976e-01	k: 58623	n:70000
C6orf186   70000 perm   15 sec   (4631 perm/sec)   p_kst 8.374714e-01   p_cons 1.520000e-02   p_joint 3.177143e-02

Joint ci ratio: 8.169438e-02	ci left: 2.683095e-02	ci right 2.912845e-02	k: 2237	n:80000
Cons ci ratio: 1.116487e-01	ci left: 1.432709e-02	ci right 1.603334e-02	k: 1213	n:80000
KS ci ratio: 6.105210e-03	ci left: 8.349126e-01	ci right 8.400379e-01	k: 66999	n:80000
C6orf186   80000 perm   18 sec   (4529 perm/sec)   p_kst 8.374875e-01   p_cons 1.516250e-02   p_joint 2.796250e-02

Joint ci ratio: 6.224208e-02	ci left: 4.089575e-02	ci right 4.353386e-02	k: 3798	n:90000
Cons ci ratio: 1.052146e-01	ci left: 1.438913e-02	ci right 1.599790e-02	k: 1366	n:90000
KS ci ratio: 5.758359e-03	ci left: 8.349505e-01	ci right 8.397833e-01	k: 75364	n:90000
C6orf186   90000 perm   20 sec   (4439 perm/sec)   p_kst 8.373778e-01   p_cons 1.517778e-02   p_joint 4.220000e-02

Joint ci ratio: 5.867971e-02	ci left: 4.146504e-02	ci right 4.398157e-02	k: 4271	n:100000
Cons ci ratio: 1.002820e-01	ci left: 1.429473e-02	ci right 1.581359e-02	k: 1504	n:100000
KS ci ratio: 5.447558e-03	ci left: 8.358424e-01	ci right 8.404180e-01	k: 83814	n:100000
C6orf186   100000 perm   23 sec   (4356 perm/sec)   p_kst 8.381400e-01   p_cons 1.504000e-02   p_joint 4.271000e-02

Joint ci ratio: 5.351522e-02	ci left: 4.526309e-02	ci right 4.776089e-02	k: 5115	n:110000
Cons ci ratio: 9.527970e-02	ci left: 1.443198e-02	ci right 1.588466e-02	k: 1666	n:110000
KS ci ratio: 5.204893e-03	ci left: 8.353796e-01	ci right 8.397480e-01	k: 92133	n:110000
C6orf186   110000 perm   26 sec   (4273 perm/sec)   p_kst 8.375727e-01   p_cons 1.514545e-02   p_joint 4.650000e-02

Outputting figure to mutsig2_images.part000000000026/C6orf186.2_1121_110000_0.83757_0.015145_0.0465.png
                gene_name: C6orf186
               theta_stop: 0.095 
                    nperm: 110000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.048 

Current progress: 82 percent done.
C6orf192
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.677188e-02	ci left: 6.726697e-01	ci right 6.910243e-01	k: 6819	n:10000
KS ci ratio: 5.245524e-03	ci left: 9.797349e-01	ci right 9.849787e-01	k: 9825	n:10000
C6orf192   10000 perm   2 sec   (6079 perm/sec)   p_kst 9.825000e-01   p_cons 6.819000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf192.2_1427_10000_0.9825_0.6819_1.png
                gene_name: C6orf192
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
C6orf221
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.750450e-02	ci left: 3.953575e-01	ci right 4.146978e-01	k: 4050	n:10000
Cons ci ratio: 7.446075e-02	ci left: 2.088557e-01	ci right 2.251095e-01	k: 2169	n:10000
KS ci ratio: 3.648198e-02	ci left: 5.259661e-01	ci right 5.456130e-01	k: 5358	n:10000
C6orf221   10000 perm   1 sec   (6874 perm/sec)   p_kst 5.358000e-01   p_cons 2.169000e-01   p_joint 4.050000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf221.2_666_10000_0.5358_0.2169_0.405.png
                gene_name: C6orf221
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 87 percent done.
C6orf25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.450511e-02	ci left: 7.100773e-01	ci right 7.277950e-01	k: 7190	n:10000
KS ci ratio: 4.133735e-02	ci left: 4.635730e-01	ci right 4.832425e-01	k: 4734	n:10000
C6orf25   10000 perm   2 sec   (6536 perm/sec)   p_kst 4.734000e-01   p_cons 7.190000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf25.2_798_10000_0.4734_0.719_1.png
                gene_name: C6orf25
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
C6orf27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.229451e-02	ci left: 9.047348e-01	ci right 9.160249e-01	k: 9105	n:10000
KS ci ratio: 2.156933e-02	ci left: 7.591946e-01	ci right 7.758493e-01	k: 7676	n:10000
C6orf27   10000 perm   2 sec   (5492 perm/sec)   p_kst 7.676000e-01   p_cons 9.105000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf27.2_2740_10000_0.7676_0.9105_1.png
                gene_name: C6orf27
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
C6orf62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.124744e-02	ci left: 9.186317e-01	ci right 9.291198e-01	k: 9240	n:10000
KS ci ratio: 3.282959e-02	ci left: 5.779777e-01	ci right 5.973712e-01	k: 5877	n:10000
C6orf62   10000 perm   2 sec   (6588 perm/sec)   p_kst 5.877000e-01   p_cons 9.240000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C6orf62.2_710_10000_0.5877_0.924_1.png
                gene_name: C6orf62
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
C6orf64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.745367e-02	ci left: 5.128549e-01	ci right 5.325319e-01	k: 5227	n:10000
Cons ci ratio: 6.611438e-02	ci left: 2.514238e-01	ci right 2.687162e-01	k: 2600	n:10000
KS ci ratio: 1.683568e-02	ci left: 8.370436e-01	ci right 8.513552e-01	k: 8443	n:10000
C6orf64   10000 perm   1 sec   (7221 perm/sec)   p_kst 8.443000e-01   p_cons 2.600000e-01   p_joint 5.227000e-01

Outputting figure to mutsig2_images.part000000000026/C6orf64.2_560_10000_0.8443_0.26_0.5227.png
                gene_name: C6orf64
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 96 percent done.
C7orf10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.420315e-02	ci left: 5.579219e-01	ci right 5.774387e-01	k: 5677	n:10000
KS ci ratio: 3.253919e-02	ci left: 5.822919e-01	ci right 6.016545e-01	k: 5920	n:10000
C7orf10   10000 perm   2 sec   (6199 perm/sec)   p_kst 5.920000e-01   p_cons 5.677000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000026/C7orf10.2_1365_10000_0.592_0.5677_1.png
                gene_name: C7orf10
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
C7orf11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.574050e-02	ci left: 5.361795e-01	ci right 5.557937e-01	k: 5460	n:10000
Cons ci ratio: 2.504549e-02	ci left: 7.010970e-01	ci right 7.189804e-01	k: 7101	n:10000
KS ci ratio: 6.129090e-02	ci left: 2.813167e-01	ci right 2.992056e-01	k: 2902	n:10000
C7orf11   10000 perm   1 sec   (7064 perm/sec)   p_kst 2.902000e-01   p_cons 7.101000e-01   p_joint 5.460000e-01

Outputting figure to mutsig2_images.part000000000026/C7orf11.2_548_10000_0.2902_0.7101_0.546.png
                gene_name: C7orf11
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000026
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 26 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1703>
Subject: Job 9893864: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1703>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000027> was used as the working directory.
Started at Fri Oct  5 23:58:43 2012
Results reported at Sat Oct  6 00:04:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000027.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000027.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 27  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000027.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    343.79 sec.
    Max Memory :      3595 MB
    Max Swap   :      6004 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
27
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 27
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 27: processing genes 2345 - 2434
Calculating significance of each gene.
Using projection method.
2345	C7orf27	7.738639e-01
2346	C7orf28A	1
2347	C7orf28B	8.838738e-01
2348	C7orf29	2.199211e-02
2349	C7orf30	5.903729e-01
2350	C7orf31	6.936902e-01
2351	C7orf33	2.528983e-02
2352	C7orf34	4.081657e-01
2353	C7orf36	1
2354	C7orf41	5.830675e-01
2355	C7orf42	4.043199e-01
2356	C7orf43	7.691710e-01
2357	C7orf44	1
2358	C7orf45	1
2359	C7orf46	7.832526e-01
2360	C7orf47	1
2361	C7orf49	2.568907e-01
2362	C7orf50	3.190070e-01
2363	C7orf51	5.790063e-01
2364	C7orf52	1
2365	C7orf53	1.091791e-01
2366	C7orf55	1
2367	C7orf57	4.520188e-01
2368	C7orf58	1.608779e-01
2369	C7orf59	2.637189e-01
2370	C7orf60	1
2371	C7orf61	1
In gene C7orf63 the following bins exceed PROBCAP:
    COAD-AA-3530	categ 6	N = 2776    n = 1	mu =   1.97e-07
2372	C7orf63	1.168428e-01
2373	C7orf64	4.687047e-01
2374	C7orf65	4.665376e-01
2375	C7orf66	3.176543e-01
2376	C7orf68	1
2377	C7orf69	1
2378	C7orf70	6.973650e-01
2379	C8A	7.224292e-02
2380	C8B	6.059267e-05
2381	C8G	1
2382	C8orf22	3.596914e-01
2383	C8orf31	4.409947e-01
2384	C8orf33	1
2385	C8orf34	5.348989e-02
2386	C8orf37	4.056900e-01
2387	C8orf38	1
2388	C8orf4	2.557899e-01
2389	C8orf40	1.711928e-01
2390	C8orf41	4.203288e-01
2391	C8orf42	4.941873e-02
2392	C8orf44	1
2393	C8orf45	5.397697e-01
2394	C8orf46	5.420802e-01
2395	C8orf47	6.479113e-02
2396	C8orf55	1.983631e-01
2397	C8orf58	1
2398	C8orf59	1
2399	C8orf73	1
2400	C8orf74	4.199861e-01
2401	C8orf76	1
2402	C8orf79	5.834750e-01
2403	C8orf80	3.325824e-02
2404	C8orf84	5.606415e-01
2405	C8orf85	4.962281e-01
2406	C8orf86	3.928621e-01
2407	C9	4.905177e-02
2408	C9orf100	4.032582e-01
2409	C9orf102	1.807557e-01
2410	C9orf103	1.175224e-01
2411	C9orf106	4.581331e-01
2412	C9orf11	3.157064e-01
2413	C9orf114	3.082210e-01
2414	C9orf116	1
2415	C9orf117	8.859657e-01
2416	C9orf119	7.594124e-01
2417	C9orf123	1
2418	C9orf125	1.068845e-01
2419	C9orf128	3.298029e-01
2420	C9orf129	3.996056e-01
2421	C9orf131	8.249878e-01
2422	C9orf135	5.071114e-01
2423	C9orf139	1
2424	C9orf140	1
2425	C9orf142	1
2426	C9orf150	1.267333e-01
2427	C9orf152	4.411716e-01
2428	C9orf153	1
2429	C9orf156	5.398678e-01
2430	C9orf16	1
2431	C9orf163	1
2432	C9orf167	1
2433	C9orf170	1
2434	C9orf171	9.829988e-02
Done

Running MutSig 2:
Scatter job 27: processing genes 2345 - 2434
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
C7orf58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.106480e-02	ci left: 4.668688e-01	ci right 4.865448e-01	k: 4767	n:10000
Cons ci ratio: 8.892412e-02	ci left: 1.554168e-01	ci right 1.699803e-01	k: 1626	n:10000
KS ci ratio: 2.539863e-02	ci left: 6.952470e-01	ci right 7.132339e-01	k: 7043	n:10000
C7orf58   10000 perm   2 sec   (4333 perm/sec)   p_kst 7.043000e-01   p_cons 1.626000e-01   p_joint 4.767000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf58.12_3215_10000_0.7043_0.1626_0.4767.png
                gene_name: C7orf58
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 3 percent done.
C7orf63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.816980e-02	ci left: 3.031235e-01	ci right 3.213860e-01	k: 3122	n:10000
Cons ci ratio: 4.664801e-02	ci left: 4.041232e-01	ci right 4.235270e-01	k: 4138	n:10000
KS ci ratio: 6.531663e-02	ci left: 2.560727e-01	ci right 2.734646e-01	k: 2647	n:10000
C7orf63   10000 perm   2 sec   (4571 perm/sec)   p_kst 2.647000e-01   p_cons 4.138000e-01   p_joint 3.122000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf63.11_2918_10000_0.2647_0.4138_0.3122.png
                gene_name: C7orf63
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 6 percent done.
C8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.862992e-02	ci left: 6.426714e-01	ci right 6.614400e-01	k: 6521	n:10000
KS ci ratio: 1.171276e-02	ci left: 9.125529e-01	ci right 9.234021e-01	k: 9181	n:10000
C8B   10000 perm   2 sec   (5560 perm/sec)   p_kst 9.181000e-01   p_cons 6.521000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C8B.10_1824_10000_0.9181_0.6521_1.png
                gene_name: C8B
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
C8orf80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.841808e-02	ci left: 5.001504e-01	ci right 5.198437e-01	k: 5100	n:10000
Cons ci ratio: 4.442278e-02	ci left: 4.279459e-01	ci right 4.474904e-01	k: 4377	n:10000
KS ci ratio: 4.355812e-02	ci left: 4.376211e-01	ci right 4.572096e-01	k: 4474	n:10000
C8orf80   10000 perm   2 sec   (4414 perm/sec)   p_kst 4.474000e-01   p_cons 4.377000e-01   p_joint 5.100000e-01

Outputting figure to mutsig2_images.part000000000027/C8orf80.10_2463_10000_0.4474_0.4377_0.51.png
                gene_name: C8orf80
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 12 percent done.
C8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.449635e-02	ci left: 1.695643e-01	ci right 1.846243e-01	k: 1770	n:10000
Cons ci ratio: 7.463647e-02	ci left: 2.080667e-01	ci right 2.242990e-01	k: 2161	n:10000
KS ci ratio: 8.038774e-02	ci left: 1.843208e-01	ci right 1.998590e-01	k: 1920	n:10000
C8A   10000 perm   2 sec   (5884 perm/sec)   p_kst 1.920000e-01   p_cons 2.161000e-01   p_joint 1.770000e-01

Outputting figure to mutsig2_images.part000000000027/C8A.6_1799_10000_0.192_0.2161_0.177.png
                gene_name: C8A
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 15 percent done.
C8orf34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.307401e-02	ci left: 5.743665e-01	ci right 5.937845e-01	k: 5841	n:10000
KS ci ratio: 6.013027e-03	ci left: 9.739755e-01	ci right 9.799422e-01	k: 9771	n:10000
C8orf34   10000 perm   2 sec   (5769 perm/sec)   p_kst 9.771000e-01   p_cons 5.841000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C8orf34.6_1336_10000_0.9771_0.5841_1.png
                gene_name: C8orf34
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
C9orf102
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.866427e-02	ci left: 2.372873e-01	ci right 2.542610e-01	k: 2457	n:10000
Cons ci ratio: 1.597573e-02	ci left: 8.505966e-01	ci right 8.643944e-01	k: 8576	n:10000
KS ci ratio: 1.014049e-01	ci left: 1.233692e-01	ci right 1.366472e-01	k: 1299	n:10000
C9orf102   10000 perm   2 sec   (4604 perm/sec)   p_kst 1.299000e-01   p_cons 8.576000e-01   p_joint 2.457000e-01

Joint ci ratio: 4.742782e-02	ci left: 2.485239e-01	ci right 2.606475e-01	k: 5091	n:20000
Cons ci ratio: 1.148463e-02	ci left: 8.485230e-01	ci right 8.583740e-01	k: 17070	n:20000
KS ci ratio: 6.927520e-02	ci left: 1.331986e-01	ci right 1.428069e-01	k: 2759	n:20000
C9orf102   20000 perm   5 sec   (4327 perm/sec)   p_kst 1.379500e-01   p_cons 8.535000e-01   p_joint 2.545500e-01

Outputting figure to mutsig2_images.part000000000027/C9orf102.6_2195_20000_0.13795_0.8535_0.25455.png
                gene_name: C9orf102
               theta_stop: 0.069 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 21 percent done.
C8orf41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.476599e-02	ci left: 7.057380e-01	ci right 7.235368e-01	k: 7147	n:10000
Cons ci ratio: 3.205655e-02	ci left: 5.895172e-01	ci right 6.088250e-01	k: 5992	n:10000
KS ci ratio: 3.851041e-02	ci left: 4.989503e-01	ci right 5.186445e-01	k: 5088	n:10000
C8orf41   10000 perm   2 sec   (6029 perm/sec)   p_kst 5.088000e-01   p_cons 5.992000e-01   p_joint 7.147000e-01

Outputting figure to mutsig2_images.part000000000027/C8orf41.5_1555_10000_0.5088_0.5992_0.7147.png
                gene_name: C8orf41
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 24 percent done.
C9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.025129e-02	ci left: 2.883517e-01	ci right 3.063665e-01	k: 2973	n:10000
Cons ci ratio: 2.749029e-02	ci left: 6.609875e-01	ci right 6.795132e-01	k: 6703	n:10000
KS ci ratio: 8.469983e-02	ci left: 1.688761e-01	ci right 1.839129e-01	k: 1763	n:10000
C9   10000 perm   2 sec   (4956 perm/sec)   p_kst 1.763000e-01   p_cons 6.703000e-01   p_joint 2.973000e-01

Outputting figure to mutsig2_images.part000000000027/C9.5_1724_10000_0.1763_0.6703_0.2973.png
                gene_name: C9
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 26 percent done.
C7orf33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.420826e-02	ci left: 7.150233e-01	ci right 7.326461e-01	k: 7239	n:10000
Cons ci ratio: 6.013027e-03	ci left: 9.739755e-01	ci right 9.799422e-01	k: 9771	n:10000
KS ci ratio: 3.662888e-02	ci left: 5.239639e-01	ci right 5.436164e-01	k: 5338	n:10000
C7orf33   10000 perm   2 sec   (5755 perm/sec)   p_kst 5.338000e-01   p_cons 9.771000e-01   p_joint 7.239000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf33.4_546_10000_0.5338_0.9771_0.7239.png
                gene_name: C7orf33
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 29 percent done.
C8orf45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.403880e-02	ci left: 7.178502e-01	ci right 7.354176e-01	k: 7267	n:10000
Cons ci ratio: 3.185675e-02	ci left: 5.925284e-01	ci right 6.118120e-01	k: 6022	n:10000
KS ci ratio: 3.824171e-02	ci left: 5.024508e-01	ci right 5.221421e-01	k: 5123	n:10000
C8orf45   10000 perm   2 sec   (5579 perm/sec)   p_kst 5.123000e-01   p_cons 6.022000e-01   p_joint 7.267000e-01

Outputting figure to mutsig2_images.part000000000027/C8orf45.4_2126_10000_0.5123_0.6022_0.7267.png
                gene_name: C8orf45
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 32 percent done.
C8orf47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.780176e-02	ci left: 6.559541e-01	ci right 6.745495e-01	k: 6653	n:10000
Cons ci ratio: 3.504683e-02	ci left: 5.458961e-01	ci right 5.654714e-01	k: 5557	n:10000
KS ci ratio: 4.099081e-02	ci left: 4.677677e-01	ci right 4.874453e-01	k: 4776	n:10000
C8orf47   10000 perm   2 sec   (6284 perm/sec)   p_kst 4.776000e-01   p_cons 5.557000e-01   p_joint 6.653000e-01

Outputting figure to mutsig2_images.part000000000027/C8orf47.4_1137_10000_0.4776_0.5557_0.6653.png
                gene_name: C8orf47
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 35 percent done.
C9orf125
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.345887e-02	ci left: 8.884162e-01	ci right 9.005529e-01	k: 8946	n:10000
KS ci ratio: 2.624268e-02	ci left: 6.813348e-01	ci right 6.995541e-01	k: 6905	n:10000
C9orf125   10000 perm   2 sec   (6241 perm/sec)   p_kst 6.905000e-01   p_cons 8.946000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C9orf125.4_1216_10000_0.6905_0.8946_1.png
                gene_name: C9orf125
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
C9orf131
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.201022e-02	ci left: 7.518078e-01	ci right 7.686403e-01	k: 7603	n:10000
Cons ci ratio: 2.628565e-02	ci left: 6.806294e-01	ci right 6.988600e-01	k: 6898	n:10000
KS ci ratio: 5.095471e-02	ci left: 3.622168e-01	ci right 3.812580e-01	k: 3717	n:10000
C9orf131   10000 perm   2 sec   (5396 perm/sec)   p_kst 3.717000e-01   p_cons 6.898000e-01   p_joint 7.603000e-01

Outputting figure to mutsig2_images.part000000000027/C9orf131.4_3264_10000_0.3717_0.6898_0.7603.png
                gene_name: C9orf131
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 41 percent done.
C9orf171
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.956496e-02	ci left: 2.325450e-01	ci right 2.494061e-01	k: 2409	n:10000
Cons ci ratio: 3.356648e-02	ci left: 5.671455e-01	ci right 5.866096e-01	k: 5769	n:10000
KS ci ratio: 1.135979e-01	ci left: 1.003243e-01	ci right 1.125061e-01	k: 1063	n:10000
C9orf171   10000 perm   2 sec   (5663 perm/sec)   p_kst 1.063000e-01   p_cons 5.769000e-01   p_joint 2.409000e-01

Joint ci ratio: 5.633580e-02	ci left: 1.893803e-01	ci right 2.004086e-01	k: 3897	n:20000
Cons ci ratio: 2.342191e-02	ci left: 5.765308e-01	ci right 5.902449e-01	k: 11668	n:20000
KS ci ratio: 8.039080e-02	ci left: 1.019626e-01	ci right 1.105523e-01	k: 2124	n:20000
C9orf171   20000 perm   4 sec   (5180 perm/sec)   p_kst 1.062000e-01   p_cons 5.834000e-01   p_joint 1.948500e-01

Outputting figure to mutsig2_images.part000000000027/C9orf171.4_991_20000_0.1062_0.5834_0.19485.png
                gene_name: C9orf171
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 44 percent done.
C7orf29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.924358e-03	ci left: 9.463777e-01	ci right 9.549573e-01	k: 9508	n:10000
KS ci ratio: 1.409225e-02	ci left: 8.791989e-01	ci right 8.917756e-01	k: 8856	n:10000
C7orf29   10000 perm   2 sec   (6544 perm/sec)   p_kst 8.856000e-01   p_cons 9.508000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C7orf29.3_715_10000_0.8856_0.9508_1.png
                gene_name: C7orf29
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
C7orf42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.080238e-02	ci left: 4.700652e-01	ci right 4.897466e-01	k: 4799	n:10000
KS ci ratio: 1.341604e-02	ci left: 8.890312e-01	ci right 9.011376e-01	k: 8952	n:10000
C7orf42   10000 perm   2 sec   (6463 perm/sec)   p_kst 8.952000e-01   p_cons 4.799000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C7orf42.3_969_10000_0.8952_0.4799_1.png
                gene_name: C7orf42
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
C7orf64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.801281e-02	ci left: 5.054515e-01	ci right 5.251396e-01	k: 5153	n:10000
Cons ci ratio: 6.339341e-02	ci left: 2.677498e-01	ci right 2.853805e-01	k: 2765	n:10000
KS ci ratio: 2.282482e-02	ci left: 7.381561e-01	ci right 7.553000e-01	k: 7468	n:10000
C7orf64   10000 perm   2 sec   (5066 perm/sec)   p_kst 7.468000e-01   p_cons 2.765000e-01   p_joint 5.153000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf64.3_1124_10000_0.7468_0.2765_0.5153.png
                gene_name: C7orf64
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 53 percent done.
C8orf42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.915495e-02	ci left: 4.906512e-01	ci right 5.103485e-01	k: 5005	n:10000
Cons ci ratio: 3.482032e-02	ci left: 5.491024e-01	ci right 5.686632e-01	k: 5589	n:10000
KS ci ratio: 5.216508e-02	ci left: 3.513793e-01	ci right 3.703019e-01	k: 3608	n:10000
C8orf42   10000 perm   1 sec   (6692 perm/sec)   p_kst 3.608000e-01   p_cons 5.589000e-01   p_joint 5.005000e-01

Outputting figure to mutsig2_images.part000000000027/C8orf42.3_570_10000_0.3608_0.5589_0.5005.png
                gene_name: C8orf42
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 56 percent done.
C9orf114
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.974606e-02	ci left: 1.867820e-01	ci right 2.023963e-01	k: 1945	n:10000
Cons ci ratio: 1.383382e-02	ci left: 8.829867e-01	ci right 8.953856e-01	k: 8893	n:10000
KS ci ratio: 1.224866e-01	ci left: 8.718231e-02	ci right 9.865611e-02	k: 928	n:10000
C9orf114   10000 perm   2 sec   (6053 perm/sec)   p_kst 9.280000e-02   p_cons 8.893000e-01   p_joint 1.945000e-01

Joint ci ratio: 5.778542e-02	ci left: 1.816170e-01	ci right 1.924742e-01	k: 3740	n:20000
Cons ci ratio: 1.011289e-02	ci left: 8.780073e-01	ci right 8.869812e-01	k: 17651	n:20000
KS ci ratio: 8.498378e-02	ci left: 9.204927e-02	ci right 1.002686e-01	k: 1922	n:20000
C9orf114   20000 perm   4 sec   (5364 perm/sec)   p_kst 9.610000e-02   p_cons 8.825500e-01   p_joint 1.870000e-01

Outputting figure to mutsig2_images.part000000000027/C9orf114.3_1179_20000_0.0961_0.88255_0.187.png
                gene_name: C9orf114
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 59 percent done.
C9orf156
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.868369e-02	ci left: 8.071466e-01	ci right 8.224696e-01	k: 8149	n:10000
Cons ci ratio: 2.112175e-02	ci left: 7.666861e-01	ci right 7.831535e-01	k: 7750	n:10000
KS ci ratio: 3.174386e-02	ci left: 5.942350e-01	ci right 6.135045e-01	k: 6039	n:10000
C9orf156   10000 perm   2 sec   (6208 perm/sec)   p_kst 6.039000e-01   p_cons 7.750000e-01   p_joint 8.149000e-01

Outputting figure to mutsig2_images.part000000000027/C9orf156.3_1346_10000_0.6039_0.775_0.8149.png
                gene_name: C9orf156
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 62 percent done.
C7orf27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.113690e-02	ci left: 6.034724e-01	ci right 6.226617e-01	k: 6131	n:10000
Cons ci ratio: 2.372437e-02	ci left: 7.231012e-01	ci right 7.405635e-01	k: 7319	n:10000
KS ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
C7orf27   10000 perm   2 sec   (5773 perm/sec)   p_kst 4.270000e-02   p_cons 7.319000e-01   p_joint 6.131000e-01

Joint ci ratio: 4.089418e-02	ci left: 3.083159e-01	ci right 3.212379e-01	k: 6295	n:20000
Cons ci ratio: 1.605227e-02	ci left: 7.427788e-01	ci right 7.548488e-01	k: 14977	n:20000
KS ci ratio: 1.349137e-01	ci left: 3.776159e-02	ci right 4.327302e-02	k: 809	n:20000
C7orf27   20000 perm   4 sec   (4965 perm/sec)   p_kst 4.045000e-02   p_cons 7.488500e-01   p_joint 3.147500e-01

Joint ci ratio: 3.474747e-02	ci left: 2.926616e-01	ci right 3.030442e-01	k: 8935	n:30000
Cons ci ratio: 1.320015e-02	ci left: 7.412016e-01	ci right 7.510840e-01	k: 22385	n:30000
KS ci ratio: 1.109690e-01	ci left: 3.771320e-02	ci right 4.217646e-02	k: 1197	n:30000
C7orf27   30000 perm   6 sec   (4714 perm/sec)   p_kst 3.990000e-02   p_cons 7.461667e-01   p_joint 2.978333e-01

Joint ci ratio: 2.905794e-02	ci left: 3.081332e-01	ci right 3.172440e-01	k: 12507	n:40000
Cons ci ratio: 1.141559e-02	ci left: 7.424077e-01	ci right 7.509564e-01	k: 29868	n:40000
KS ci ratio: 9.661803e-02	ci left: 3.761217e-02	ci right 4.145504e-02	k: 1580	n:40000
C7orf27   40000 perm   9 sec   (4346 perm/sec)   p_kst 3.950000e-02   p_cons 7.467000e-01   p_joint 3.126750e-01

Outputting figure to mutsig2_images.part000000000027/C7orf27.2_2518_40000_0.0395_0.7467_0.31267.png
                gene_name: C7orf27
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 65 percent done.
C7orf30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.785907e-02	ci left: 2.416357e-01	ci right 2.587100e-01	k: 2501	n:10000
Cons ci ratio: 9.926549e-02	ci left: 1.281636e-01	ci right 1.416499e-01	k: 1348	n:10000
KS ci ratio: 4.627510e-02	ci left: 4.080090e-01	ci right 4.274390e-01	k: 4177	n:10000
C7orf30   10000 perm   1 sec   (6853 perm/sec)   p_kst 4.177000e-01   p_cons 1.348000e-01   p_joint 2.501000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf30.2_721_10000_0.4177_0.1348_0.2501.png
                gene_name: C7orf30
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 68 percent done.
C7orf49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.116124e-01	ci left: 1.036391e-01	ci right 1.159892e-01	k: 1097	n:10000
Cons ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
KS ci ratio: 2.411141e-02	ci left: 7.166386e-01	ci right 7.342299e-01	k: 7255	n:10000
C7orf49   10000 perm   1 sec   (6850 perm/sec)   p_kst 7.255000e-01   p_cons 6.310000e-02   p_joint 1.097000e-01

Joint ci ratio: 6.643894e-02	ci left: 1.433023e-01	ci right 1.532002e-01	k: 2964	n:20000
Cons ci ratio: 1.086079e-01	ci left: 5.781956e-02	ci right 6.450873e-02	k: 1222	n:20000
KS ci ratio: 1.719738e-02	ci left: 7.157843e-01	ci right 7.282511e-01	k: 14441	n:20000
C7orf49   20000 perm   3 sec   (5998 perm/sec)   p_kst 7.220500e-01   p_cons 6.110000e-02   p_joint 1.482000e-01

Joint ci ratio: 6.382242e-02	ci left: 1.081237e-01	ci right 1.152850e-01	k: 3350	n:30000
Cons ci ratio: 8.861434e-02	ci left: 5.851355e-02	ci right 6.397180e-02	k: 1836	n:30000
KS ci ratio: 1.398982e-02	ci left: 7.184342e-01	ci right 7.285892e-01	k: 21706	n:30000
C7orf49   30000 perm   5 sec   (5720 perm/sec)   p_kst 7.235333e-01   p_cons 6.120000e-02   p_joint 1.116667e-01

Outputting figure to mutsig2_images.part000000000027/C7orf49.2_486_30000_0.72353_0.0612_0.11167.png
                gene_name: C7orf49
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 71 percent done.
C7orf51
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.694478e-02	ci left: 6.698493e-01	ci right 6.882463e-01	k: 6791	n:10000
KS ci ratio: 2.581381e-02	ci left: 6.883905e-01	ci right 7.064943e-01	k: 6975	n:10000
C7orf51   10000 perm   2 sec   (5641 perm/sec)   p_kst 6.975000e-01   p_cons 6.791000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C7orf51.2_2550_10000_0.6975_0.6791_1.png
                gene_name: C7orf51
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
C7orf53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.594306e-02	ci left: 2.524128e-01	ci right 2.697266e-01	k: 2610	n:10000
Cons ci ratio: 5.160444e-02	ci left: 3.563500e-01	ci right 3.753282e-01	k: 3658	n:10000
KS ci ratio: 4.602870e-02	ci left: 4.105999e-01	ci right 4.300466e-01	k: 4203	n:10000
C7orf53   10000 perm   1 sec   (6979 perm/sec)   p_kst 4.203000e-01   p_cons 3.658000e-01   p_joint 2.610000e-01

Outputting figure to mutsig2_images.part000000000027/C7orf53.2_408_10000_0.4203_0.3658_0.261.png
                gene_name: C7orf53
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 76 percent done.
C8orf74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.932257e-03	ci left: 9.746130e-01	ci right 9.805043e-01	k: 9777	n:10000
KS ci ratio: 9.356863e-02	ci left: 1.422698e-01	ci right 1.563351e-01	k: 1492	n:10000
C8orf74   10000 perm   1 sec   (6818 perm/sec)   p_kst 1.492000e-01   p_cons 9.777000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C8orf74.2_901_10000_0.1492_0.9777_1.png
                gene_name: C8orf74
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
C8orf79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.794543e-02	ci left: 6.536391e-01	ci right 6.722659e-01	k: 6630	n:10000
Cons ci ratio: 5.368008e-02	ci left: 3.383613e-01	ci right 3.571274e-01	k: 3477	n:10000
KS ci ratio: 3.268081e-02	ci left: 5.801849e-01	ci right 5.995628e-01	k: 5899	n:10000
C8orf79   10000 perm   2 sec   (6302 perm/sec)   p_kst 5.899000e-01   p_cons 3.477000e-01   p_joint 6.630000e-01

Outputting figure to mutsig2_images.part000000000027/C8orf79.2_1377_10000_0.5899_0.3477_0.663.png
                gene_name: C8orf79
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 82 percent done.
C8orf84
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.918069e-02	ci left: 3.788311e-01	ci right 3.980340e-01	k: 3884	n:10000
KS ci ratio: 3.380079e-02	ci left: 5.637364e-01	ci right 5.832208e-01	k: 5735	n:10000
C8orf84   10000 perm   2 sec   (6231 perm/sec)   p_kst 5.735000e-01   p_cons 3.884000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C8orf84.2_815_10000_0.5735_0.3884_1.png
                gene_name: C8orf84
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
C9orf100
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.856681e-02	ci left: 1.564968e-01	ci right 1.710996e-01	k: 1637	n:10000
Cons ci ratio: 1.243397e-01	ci left: 8.475243e-02	ci right 9.608748e-02	k: 903	n:10000
KS ci ratio: 3.490513e-02	ci left: 5.479000e-01	ci right 5.674664e-01	k: 5577	n:10000
C9orf100   10000 perm   2 sec   (6241 perm/sec)   p_kst 5.577000e-01   p_cons 9.030000e-02   p_joint 1.637000e-01

Joint ci ratio: 8.710467e-02	ci left: 8.793086e-02	ci right 9.598822e-02	k: 1838	n:20000
Cons ci ratio: 8.726152e-02	ci left: 8.763679e-02	ci right 9.568239e-02	k: 1832	n:20000
KS ci ratio: 2.422867e-02	ci left: 5.599484e-01	ci right 5.737322e-01	k: 11337	n:20000
C9orf100   20000 perm   4 sec   (5643 perm/sec)   p_kst 5.668500e-01   p_cons 9.160000e-02   p_joint 9.190000e-02

Outputting figure to mutsig2_images.part000000000027/C9orf100.2_1044_20000_0.56685_0.0916_0.0919.png
                gene_name: C9orf100
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.096 

Current progress: 88 percent done.
C9orf103
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.681323e-02	ci left: 5.214615e-01	ci right 5.411203e-01	k: 5313	n:10000
KS ci ratio: 3.009633e-02	ci left: 6.195460e-01	ci right 6.385788e-01	k: 6291	n:10000
C9orf103   10000 perm   1 sec   (6741 perm/sec)   p_kst 6.291000e-01   p_cons 5.313000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C9orf103.2_438_10000_0.6291_0.5313_1.png
                gene_name: C9orf103
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
C9orf11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.809659e-02	ci left: 5.043512e-01	ci right 5.240405e-01	k: 5142	n:10000
Cons ci ratio: 1.045149e-02	ci left: 9.286459e-01	ci right 9.384997e-01	k: 9337	n:10000
KS ci ratio: 8.713937e-02	ci left: 1.609163e-01	ci right 1.756775e-01	k: 1682	n:10000
C9orf11   10000 perm   2 sec   (6625 perm/sec)   p_kst 1.682000e-01   p_cons 9.337000e-01   p_joint 5.142000e-01

Outputting figure to mutsig2_images.part000000000027/C9orf11.2_917_10000_0.1682_0.9337_0.5142.png
                gene_name: C9orf11
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 94 percent done.
C9orf128
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.321513e-02	ci left: 8.919018e-01	ci right 9.038653e-01	k: 8980	n:10000
KS ci ratio: 5.166009e-02	ci left: 3.558529e-01	ci right 3.748256e-01	k: 3653	n:10000
C9orf128   10000 perm   2 sec   (6514 perm/sec)   p_kst 3.653000e-01   p_cons 8.980000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000027/C9orf128.2_1233_10000_0.3653_0.898_1.png
                gene_name: C9orf128
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
C9orf150
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.136698e-02	ci left: 9.170854e-01	ci right 9.276670e-01	k: 9225	n:10000
Cons ci ratio: 1.497436e-02	ci left: 8.660086e-01	ci right 8.791735e-01	k: 8727	n:10000
KS ci ratio: 3.045198e-02	ci left: 6.140194e-01	ci right 6.331085e-01	k: 6236	n:10000
C9orf150   10000 perm   2 sec   (6393 perm/sec)   p_kst 6.236000e-01   p_cons 8.727000e-01   p_joint 9.225000e-01

Outputting figure to mutsig2_images.part000000000027/C9orf150.2_695_10000_0.6236_0.8727_0.9225.png
                gene_name: C9orf150
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000027
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 27 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1641>
Subject: Job 9893866: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1641>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000028> was used as the working directory.
Started at Fri Oct  5 23:58:57 2012
Results reported at Sat Oct  6 00:09:29 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000028.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000028.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 28  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000028.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    644.73 sec.
    Max Memory :      3506 MB
    Max Swap   :      5955 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
28
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 28
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 28: processing genes 2435 - 2524
Calculating significance of each gene.
Using projection method.
2435	C9orf172	1
2436	C9orf173	1
2437	C9orf21	3.537694e-01
2438	C9orf23	1.429676e-01
2439	C9orf24	6.931843e-01
2440	C9orf25	7.013150e-01
2441	C9orf3	8.648398e-01
2442	C9orf30	5.888327e-01
2443	C9orf37	3.765976e-01
2444	C9orf4	4.432174e-01
2445	C9orf40	1
2446	C9orf41	2.165635e-01
2447	C9orf43	5.413131e-01
2448	C9orf46	1
2449	C9orf47	2.056708e-01
2450	C9orf5	9.192648e-01
2451	C9orf50	4.660676e-01
2452	C9orf6	1
2453	C9orf64	8.789356e-01
2454	C9orf66	1
2455	C9orf68	6.585788e-01
2456	C9orf69	1
2457	C9orf7	1
2458	C9orf71	1
2459	C9orf72	4.191355e-01
2460	C9orf78	1
2461	C9orf79	4.702727e-03
2462	C9orf80	9.853580e-02
2463	C9orf82	6.493951e-01
2464	C9orf84	6.035463e-01
2465	C9orf85	4.066233e-01
2466	C9orf86	8.607495e-01
2467	C9orf89	1
2468	C9orf9	6.604828e-01
2469	C9orf91	1
2470	C9orf93	3.503884e-01
2471	C9orf95	3.584549e-01
2472	C9orf96	6.026174e-01
2473	C9orf98	2.731361e-01
2474	CA1	4.661419e-01
2475	CA10	3.603866e-02
2476	CA11	6.396069e-01
2477	CA12	1
2478	CA13	5.039303e-01
2479	CA14	4.165465e-01
2480	CA2	5.544271e-01
2481	CA3	3.548532e-01
2482	CA4	8.279450e-01
2483	CA5A	4.504938e-01
2484	CA5B	1
2485	CA6	4.177143e-01
2486	CA7	1
2487	CA8	1.196281e-01
2488	CA9	4.163323e-01
2489	CAB39	1
2490	CAB39L	5.643349e-01
2491	CABC1	1
2492	CABIN1	5.666834e-01
2493	CABLES1	8.528509e-01
2494	CABLES2	1
2495	CABP1	6.973517e-01
2496	CABP2	6.218779e-01
2497	CABP4	5.200671e-01
2498	CABP5	1.401179e-01
2499	CABP7	1
2500	CABYR	3.963147e-01
2501	CACHD1	1.497292e-02
2502	CACNA1A	8.951298e-01
2503	CACNA1B	7.897759e-01
2504	CACNA1C	8.544255e-01
2505	CACNA1D	9.633635e-01
2506	CACNA1E	5.921466e-02
2507	CACNA1F	2.873110e-01
2508	CACNA1G	9.259046e-01
2509	CACNA1H	9.991518e-01
2510	CACNA1I	8.841763e-01
2511	CACNA1S	1.710731e-01
2512	CACNA2D1	7.943836e-03
2513	CACNA2D2	9.949054e-01
2514	CACNA2D3	5.886173e-01
2515	CACNA2D4	9.635415e-01
2516	CACNB1	9.722988e-01
2517	CACNB2	1.149468e-01
2518	CACNB3	7.472870e-01
2519	CACNB4	5.822283e-01
2520	CACNG1	4.149706e-01
2521	CACNG2	2.628305e-01
2522	CACNG3	1.352848e-03
2523	CACNG4	5.871232e-01
2524	CACNG5	4.718180e-02
Done

Running MutSig 2:
Scatter job 28: processing genes 2435 - 2524
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CACNA1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.185861e-01	ci left: 9.262972e-02	ci right 1.044053e-01	k: 984	n:10000
Cons ci ratio: 1.256392e-02	ci left: 9.010357e-01	ci right 9.125260e-01	k: 9069	n:10000
KS ci ratio: 1.922817e-01	ci left: 3.605305e-02	ci right 4.381788e-02	k: 398	n:10000
CACNA1E   10000 perm   4 sec   (2514 perm/sec)   p_kst 3.980000e-02   p_cons 9.069000e-01   p_joint 9.840000e-02

Joint ci ratio: 9.654455e-02	ci left: 7.246198e-02	ci right 7.986181e-02	k: 1522	n:20000
Cons ci ratio: 8.795543e-03	ci left: 9.044705e-01	ci right 9.125102e-01	k: 18171	n:20000
KS ci ratio: 1.379597e-01	ci left: 3.611746e-02	ci right 4.151767e-02	k: 775	n:20000
CACNA1E   20000 perm   10 sec   (1931 perm/sec)   p_kst 3.875000e-02   p_cons 9.085500e-01   p_joint 7.610000e-02

Joint ci ratio: 7.303990e-02	ci left: 8.439146e-02	ci right 9.082199e-02	k: 2627	n:30000
Cons ci ratio: 7.229261e-03	ci left: 9.040975e-01	ci right 9.106900e-01	k: 27223	n:30000
KS ci ratio: 1.140796e-01	ci left: 3.570254e-02	ci right 4.005421e-02	k: 1135	n:30000
CACNA1E   30000 perm   14 sec   (2196 perm/sec)   p_kst 3.783333e-02   p_cons 9.074333e-01   p_joint 8.756667e-02

Joint ci ratio: 6.976684e-02	ci left: 7.059225e-02	ci right 7.571992e-02	k: 2925	n:40000
Cons ci ratio: 6.248744e-03	ci left: 9.048720e-01	ci right 9.105687e-01	k: 36310	n:40000
KS ci ratio: 9.940024e-02	ci left: 3.556173e-02	ci right 3.930581e-02	k: 1496	n:40000
CACNA1E   40000 perm   17 sec   (2351 perm/sec)   p_kst 3.740000e-02   p_cons 9.077500e-01   p_joint 7.312500e-02

Outputting figure to mutsig2_images.part000000000028/CACNA1E.21_7001_40000_0.0374_0.90775_0.073125.png
                gene_name: CACNA1E
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.076 

Current progress: 2 percent done.
CACNA1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
Cons ci ratio: 2.809059e-01	ci left: 1.641496e-02	ci right 2.187026e-02	k: 190	n:10000
KS ci ratio: 1.462753e-01	ci left: 6.207973e-02	ci right 7.197432e-02	k: 669	n:10000
CACNA1A   10000 perm   3 sec   (3568 perm/sec)   p_kst 6.690000e-02   p_cons 1.900000e-02   p_joint 1.080000e-02

Joint ci ratio: 2.443899e-01	ci left: 1.114729e-02	ci right 1.429674e-02	k: 253	n:20000
Cons ci ratio: 2.126892e-01	ci left: 1.492218e-02	ci right 1.852030e-02	k: 333	n:20000
KS ci ratio: 1.065803e-01	ci left: 5.996397e-02	ci right 6.676366e-02	k: 1266	n:20000
CACNA1A   20000 perm   6 sec   (3245 perm/sec)   p_kst 6.330000e-02   p_cons 1.665000e-02   p_joint 1.265000e-02

Joint ci ratio: 1.740149e-01	ci left: 1.518449e-02	ci right 1.811019e-02	k: 498	n:30000
Cons ci ratio: 1.782389e-01	ci left: 1.445114e-02	ci right 1.731040e-02	k: 475	n:30000
KS ci ratio: 8.765260e-02	ci left: 5.975402e-02	ci right 6.526442e-02	k: 1874	n:30000
CACNA1A   30000 perm   9 sec   (3174 perm/sec)   p_kst 6.246667e-02   p_cons 1.583333e-02   p_joint 1.660000e-02

Joint ci ratio: 1.326191e-01	ci left: 1.995578e-02	ci right 2.281429e-02	k: 854	n:40000
Cons ci ratio: 1.563324e-01	ci left: 1.426412e-02	ci right 1.670696e-02	k: 618	n:40000
KS ci ratio: 7.565176e-02	ci left: 6.051551e-02	ci right 6.529819e-02	k: 2515	n:40000
CACNA1A   40000 perm   13 sec   (2991 perm/sec)   p_kst 6.287500e-02   p_cons 1.545000e-02   p_joint 2.135000e-02

Joint ci ratio: 1.290467e-01	ci left: 1.694952e-02	ci right 1.930690e-02	k: 905	n:50000
Cons ci ratio: 1.398053e-01	ci left: 1.439680e-02	ci right 1.657997e-02	k: 773	n:50000
KS ci ratio: 6.727789e-02	ci left: 6.143695e-02	ci right 6.573389e-02	k: 3178	n:50000
CACNA1A   50000 perm   17 sec   (2936 perm/sec)   p_kst 6.356000e-02   p_cons 1.546000e-02   p_joint 1.810000e-02

Joint ci ratio: 1.747506e-01	ci left: 7.589587e-03	ci right 9.058568e-03	k: 498	n:60000
Cons ci ratio: 1.175941e-01	ci left: 1.711305e-02	ci right 1.926724e-02	k: 1090	n:60000
KS ci ratio: 6.168246e-02	ci left: 6.111804e-02	ci right 6.502435e-02	k: 3783	n:60000
CACNA1A   60000 perm   20 sec   (2928 perm/sec)   p_kst 6.305000e-02   p_cons 1.816667e-02   p_joint 8.300000e-03

Joint ci ratio: 1.012672e-01	ci left: 1.989484e-02	ci right 2.203084e-02	k: 1466	n:70000
Cons ci ratio: 1.183016e-01	ci left: 1.452853e-02	ci right 1.636910e-02	k: 1080	n:70000
KS ci ratio: 5.551760e-02	ci left: 6.463693e-02	ci right 6.834196e-02	k: 4653	n:70000
CACNA1A   70000 perm   24 sec   (2891 perm/sec)   p_kst 6.647143e-02   p_cons 1.542857e-02   p_joint 2.094286e-02

Joint ci ratio: 1.033949e-01	ci left: 1.673664e-02	ci right 1.857358e-02	k: 1411	n:80000
Cons ci ratio: 1.100936e-01	ci left: 1.474047e-02	ci right 1.646992e-02	k: 1247	n:80000
KS ci ratio: 5.203087e-02	ci left: 6.452365e-02	ci right 6.798288e-02	k: 5299	n:80000
CACNA1A   80000 perm   28 sec   (2865 perm/sec)   p_kst 6.623750e-02   p_cons 1.558750e-02   p_joint 1.763750e-02

Joint ci ratio: 9.880379e-02	ci left: 1.633893e-02	ci right 1.804795e-02	k: 1546	n:90000
Cons ci ratio: 1.038725e-01	ci left: 1.476800e-02	ci right 1.639678e-02	k: 1401	n:90000
KS ci ratio: 4.887330e-02	ci left: 6.507838e-02	ci right 6.834961e-02	k: 6003	n:90000
CACNA1A   90000 perm   32 sec   (2808 perm/sec)   p_kst 6.670000e-02   p_cons 1.556667e-02   p_joint 1.717778e-02

Joint ci ratio: 9.941368e-02	ci left: 1.454833e-02	ci right 1.607997e-02	k: 1530	n:100000
Cons ci ratio: 9.815171e-02	ci left: 1.492883e-02	ci right 1.647944e-02	k: 1569	n:100000
KS ci ratio: 4.647030e-02	ci left: 6.488421e-02	ci right 6.798100e-02	k: 6642	n:100000
CACNA1A   100000 perm   36 sec   (2755 perm/sec)   p_kst 6.642000e-02   p_cons 1.569000e-02   p_joint 1.530000e-02

Outputting figure to mutsig2_images.part000000000028/CACNA1A.17_7823_100000_0.06642_0.01569_0.0153.png
                gene_name: CACNA1A
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 4 percent done.
CACHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.373928e-02	ci left: 3.378646e-01	ci right 3.566244e-01	k: 3472	n:10000
Cons ci ratio: 4.949261e-02	ci left: 3.758456e-01	ci right 3.950212e-01	k: 3854	n:10000
KS ci ratio: 5.799423e-02	ci left: 3.044128e-01	ci right 3.226959e-01	k: 3135	n:10000
CACHD1   10000 perm   3 sec   (3988 perm/sec)   p_kst 3.135000e-01   p_cons 3.854000e-01   p_joint 3.472000e-01

Outputting figure to mutsig2_images.part000000000028/CACHD1.16_3780_10000_0.3135_0.3854_0.3472.png
                gene_name: CACHD1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 6 percent done.
C9orf79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.289569e-02	ci left: 8.964156e-01	ci right 9.081488e-01	k: 9024	n:10000
Cons ci ratio: 2.283085e-02	ci left: 7.380550e-01	ci right 7.552011e-01	k: 7467	n:10000
KS ci ratio: 3.179031e-02	ci left: 5.935323e-01	ci right 6.128076e-01	k: 6032	n:10000
C9orf79   10000 perm   3 sec   (3603 perm/sec)   p_kst 6.032000e-01   p_cons 7.467000e-01   p_joint 9.024000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf79.14_4354_10000_0.6032_0.7467_0.9024.png
                gene_name: C9orf79
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 8 percent done.
CACNA1F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.601820e-01	ci left: 5.195823e-02	ci right 6.110226e-02	k: 564	n:10000
Cons ci ratio: 2.816585e-01	ci left: 1.632191e-02	ci right 2.176339e-02	k: 189	n:10000
KS ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
CACNA1F   10000 perm   3 sec   (3680 perm/sec)   p_kst 2.869000e-01   p_cons 1.890000e-02   p_joint 5.640000e-02

Joint ci ratio: 1.127930e-01	ci left: 5.372913e-02	ci right 6.020043e-02	k: 1138	n:20000
Cons ci ratio: 1.940254e-01	ci left: 1.805714e-02	ci right 2.198415e-02	k: 399	n:20000
KS ci ratio: 4.211496e-02	ci left: 2.958399e-01	ci right 3.086177e-01	k: 6044	n:20000
CACNA1F   20000 perm   6 sec   (3475 perm/sec)   p_kst 3.022000e-01   p_cons 1.995000e-02   p_joint 5.690000e-02

Joint ci ratio: 9.423476e-02	ci left: 5.195785e-02	ci right 5.712884e-02	k: 1635	n:30000
Cons ci ratio: 1.671622e-01	ci left: 1.649373e-02	ci right 1.953397e-02	k: 539	n:30000
KS ci ratio: 3.468389e-02	ci left: 2.934244e-01	ci right 3.038146e-01	k: 8958	n:30000
CACNA1F   30000 perm   9 sec   (3293 perm/sec)   p_kst 2.986000e-01   p_cons 1.796667e-02   p_joint 5.450000e-02

Joint ci ratio: 7.464375e-02	ci left: 6.208737e-02	ci right 6.692609e-02	k: 2579	n:40000
Cons ci ratio: 1.437540e-01	ci left: 1.693670e-02	ci right 1.958390e-02	k: 729	n:40000
KS ci ratio: 3.000193e-02	ci left: 2.946152e-01	ci right 3.036139e-01	k: 11964	n:40000
CACNA1F   40000 perm   13 sec   (3199 perm/sec)   p_kst 2.991000e-01   p_cons 1.822500e-02   p_joint 6.447500e-02

Joint ci ratio: 8.374583e-02	ci left: 4.021923e-02	ci right 4.375420e-02	k: 2098	n:50000
Cons ci ratio: 1.279013e-01	ci left: 1.725941e-02	ci right 1.963697e-02	k: 921	n:50000
KS ci ratio: 2.679908e-02	ci left: 2.956463e-01	ci right 3.036970e-01	k: 14983	n:50000
CACNA1F   50000 perm   16 sec   (3107 perm/sec)   p_kst 2.996600e-01   p_cons 1.842000e-02   p_joint 4.196000e-02

Joint ci ratio: 7.695773e-02	ci left: 3.985259e-02	ci right 4.305862e-02	k: 2486	n:60000
Cons ci ratio: 1.174844e-01	ci left: 1.714542e-02	ci right 1.930154e-02	k: 1092	n:60000
KS ci ratio: 2.531777e-02	ci left: 2.818550e-01	ci right 2.890991e-01	k: 17128	n:60000
CACNA1F   60000 perm   20 sec   (3065 perm/sec)   p_kst 2.854667e-01   p_cons 1.820000e-02   p_joint 4.143333e-02

Joint ci ratio: 7.097520e-02	ci left: 4.027314e-02	ci right 4.325072e-02	k: 2922	n:70000
Cons ci ratio: 1.091260e-01	ci left: 1.711139e-02	ci right 1.910027e-02	k: 1266	n:70000
KS ci ratio: 2.342071e-02	ci left: 2.824549e-01	ci right 2.891629e-01	k: 20006	n:70000
CACNA1F   70000 perm   23 sec   (3019 perm/sec)   p_kst 2.858000e-01   p_cons 1.808571e-02   p_joint 4.174286e-02

Joint ci ratio: 6.526347e-02	ci left: 4.173999e-02	ci right 4.456826e-02	k: 3451	n:80000
Cons ci ratio: 1.025844e-01	ci left: 1.700468e-02	ci right 1.885552e-02	k: 1433	n:80000
KS ci ratio: 2.192898e-02	ci left: 2.822846e-01	ci right 2.885559e-01	k: 22833	n:80000
CACNA1F   80000 perm   27 sec   (2924 perm/sec)   p_kst 2.854125e-01   p_cons 1.791250e-02   p_joint 4.313750e-02

Joint ci ratio: 5.588567e-02	ci left: 5.038293e-02	ci right 5.329049e-02	k: 4664	n:90000
Cons ci ratio: 9.703189e-02	ci left: 1.694617e-02	ci right 1.868511e-02	k: 1602	n:90000
KS ci ratio: 2.063507e-02	ci left: 2.832485e-01	ci right 2.891653e-01	k: 25758	n:90000
CACNA1F   90000 perm   31 sec   (2869 perm/sec)   p_kst 2.862000e-01   p_cons 1.780000e-02   p_joint 5.182222e-02

Outputting figure to mutsig2_images.part000000000028/CACNA1F.14_6126_90000_0.2862_0.0178_0.051822.png
                gene_name: CACNA1F
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.053 

Current progress: 10 percent done.
CACNA1S
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.287374e-02	ci left: 8.967235e-01	ci right 9.084408e-01	k: 9027	n:10000
KS ci ratio: 2.613838e-02	ci left: 6.830481e-01	ci right 7.012398e-01	k: 6922	n:10000
CACNA1S   10000 perm   3 sec   (3994 perm/sec)   p_kst 6.922000e-01   p_cons 9.027000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000028/CACNA1S.14_5798_10000_0.6922_0.9027_1.png
                gene_name: CACNA1S
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
CACNA1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.651998e-01	ci left: 4.888186e-02	ci right 5.778061e-02	k: 532	n:10000
Cons ci ratio: 2.878995e-01	ci left: 1.557819e-02	ci right 2.090773e-02	k: 181	n:10000
KS ci ratio: 9.176931e-02	ci left: 1.471732e-01	ci right 1.614288e-01	k: 1542	n:10000
CACNA1C   10000 perm   3 sec   (3936 perm/sec)   p_kst 1.542000e-01   p_cons 1.810000e-02   p_joint 5.320000e-02

Joint ci ratio: 1.092276e-01	ci left: 5.718621e-02	ci right 6.384227e-02	k: 1209	n:20000
Cons ci ratio: 2.047293e-01	ci left: 1.615527e-02	ci right 1.988674e-02	k: 359	n:20000
KS ci ratio: 6.474296e-02	ci left: 1.498618e-01	ci right 1.599388e-01	k: 3097	n:20000
CACNA1C   20000 perm   6 sec   (3439 perm/sec)   p_kst 1.548500e-01   p_cons 1.795000e-02   p_joint 6.045000e-02

Joint ci ratio: 8.915845e-02	ci left: 5.782817e-02	ci right 6.325732e-02	k: 1815	n:30000
Cons ci ratio: 1.645439e-01	ci left: 1.703726e-02	ci right 2.012364e-02	k: 556	n:30000
KS ci ratio: 5.325651e-02	ci left: 1.488776e-01	ci right 1.570564e-01	k: 4588	n:30000
CACNA1C   30000 perm   9 sec   (3288 perm/sec)   p_kst 1.529333e-01   p_cons 1.853333e-02   p_joint 6.050000e-02

Joint ci ratio: 8.413514e-02	ci left: 4.930521e-02	ci right 5.366020e-02	k: 2058	n:40000
Cons ci ratio: 1.361600e-01	ci left: 1.891623e-02	ci right 2.170402e-02	k: 811	n:40000
KS ci ratio: 4.399963e-02	ci left: 1.619195e-01	ci right 1.692291e-01	k: 6622	n:40000
CACNA1C   40000 perm   12 sec   (3247 perm/sec)   p_kst 1.655500e-01   p_cons 2.027500e-02   p_joint 5.145000e-02

Joint ci ratio: 8.456925e-02	ci left: 3.945498e-02	ci right 4.295854e-02	k: 2059	n:50000
Cons ci ratio: 1.233450e-01	ci left: 1.857744e-02	ci right 2.103876e-02	k: 989	n:50000
KS ci ratio: 4.089434e-02	ci left: 1.520561e-01	ci right 1.584240e-01	k: 7761	n:50000
CACNA1C   50000 perm   16 sec   (3178 perm/sec)   p_kst 1.552200e-01   p_cons 1.978000e-02   p_joint 4.118000e-02

Joint ci ratio: 6.948860e-02	ci left: 4.861379e-02	ci right 5.212987e-02	k: 3021	n:60000
Cons ci ratio: 1.114082e-01	ci left: 1.908923e-02	ci right 2.135751e-02	k: 1212	n:60000
KS ci ratio: 3.717879e-02	ci left: 1.534027e-01	ci right 1.592306e-01	k: 9378	n:60000
CACNA1C   60000 perm   20 sec   (3075 perm/sec)   p_kst 1.563000e-01   p_cons 2.020000e-02   p_joint 5.035000e-02

Joint ci ratio: 6.496383e-02	ci left: 4.783437e-02	ci right 5.106025e-02	k: 3460	n:70000
Cons ci ratio: 1.036750e-01	ci left: 1.897567e-02	ci right 2.106438e-02	k: 1400	n:70000
KS ci ratio: 3.432459e-02	ci left: 1.543546e-01	ci right 1.597595e-01	k: 10993	n:70000
CACNA1C   70000 perm   23 sec   (3056 perm/sec)   p_kst 1.570429e-01   p_cons 2.000000e-02   p_joint 4.942857e-02

Joint ci ratio: 6.385534e-02	ci left: 4.354914e-02	ci right 4.643398e-02	k: 3598	n:80000
Cons ci ratio: 9.732527e-02	ci left: 1.890683e-02	ci right 2.085321e-02	k: 1589	n:80000
KS ci ratio: 3.217393e-02	ci left: 1.539885e-01	ci right 1.590364e-01	k: 12520	n:80000
CACNA1C   80000 perm   27 sec   (2991 perm/sec)   p_kst 1.565000e-01   p_cons 1.986250e-02   p_joint 4.497500e-02

Outputting figure to mutsig2_images.part000000000028/CACNA1C.12_7314_80000_0.1565_0.019863_0.044975.png
                gene_name: CACNA1C
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.046 

Current progress: 15 percent done.
CABIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.503512e-02	ci left: 2.062917e-01	ci right 2.224751e-01	k: 2143	n:10000
Cons ci ratio: 1.232929e-01	ci left: 8.611301e-02	ci right 9.752607e-02	k: 917	n:10000
KS ci ratio: 4.111420e-02	ci left: 4.662695e-01	ci right 4.859444e-01	k: 4761	n:10000
CABIN1   10000 perm   3 sec   (3620 perm/sec)   p_kst 4.761000e-01   p_cons 9.170000e-02   p_joint 2.143000e-01

Joint ci ratio: 5.556674e-02	ci left: 1.936837e-01	ci right 2.048038e-01	k: 3984	n:20000
Cons ci ratio: 8.215368e-02	ci left: 9.798590e-02	ci right 1.064301e-01	k: 2043	n:20000
KS ci ratio: 2.916201e-02	ci left: 4.676585e-01	ci right 4.815488e-01	k: 9492	n:20000
CABIN1   20000 perm   6 sec   (3367 perm/sec)   p_kst 4.746000e-01   p_cons 1.021500e-01   p_joint 1.992000e-01

Outputting figure to mutsig2_images.part000000000028/CABIN1.11_6807_20000_0.4746_0.10215_0.1992.png
                gene_name: CABIN1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 17 percent done.
CACNA1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.700042e-02	ci left: 6.689428e-01	ci right 6.873533e-01	k: 6782	n:10000
Cons ci ratio: 3.410571e-02	ci left: 5.593253e-01	ci right 5.788345e-01	k: 5691	n:10000
KS ci ratio: 3.137362e-02	ci left: 5.998573e-01	ci right 6.190789e-01	k: 6095	n:10000
CACNA1B   10000 perm   3 sec   (3849 perm/sec)   p_kst 6.095000e-01   p_cons 5.691000e-01   p_joint 6.782000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1B.11_7204_10000_0.6095_0.5691_0.6782.png
                gene_name: CACNA1B
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 19 percent done.
CACNA2D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.063989e-02	ci left: 3.651011e-01	ci right 3.841720e-01	k: 3746	n:10000
Cons ci ratio: 6.141010e-02	ci left: 2.805242e-01	ci right 2.983986e-01	k: 2894	n:10000
KS ci ratio: 6.087703e-02	ci left: 2.840908e-01	ci right 3.020299e-01	k: 2930	n:10000
CACNA2D1   10000 perm   2 sec   (4021 perm/sec)   p_kst 2.930000e-01   p_cons 2.894000e-01   p_joint 3.746000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA2D1.11_3432_10000_0.293_0.2894_0.3746.png
                gene_name: CACNA2D1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 21 percent done.
C9orf84
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.985756e-02	ci left: 7.877635e-01	ci right 8.036639e-01	k: 7958	n:10000
Cons ci ratio: 3.731132e-02	ci left: 5.147561e-01	ci right 5.344296e-01	k: 5246	n:10000
KS ci ratio: 2.828377e-02	ci left: 6.482049e-01	ci right 6.669033e-01	k: 6576	n:10000
C9orf84   10000 perm   3 sec   (3951 perm/sec)   p_kst 6.576000e-01   p_cons 5.246000e-01   p_joint 7.958000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf84.10_4572_10000_0.6576_0.5246_0.7958.png
                gene_name: C9orf84
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 23 percent done.
CACNA1G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.337758e-02	ci left: 2.678488e-01	ci right 2.854815e-01	k: 2766	n:10000
Cons ci ratio: 5.810217e-02	ci left: 3.036194e-01	ci right 3.218898e-01	k: 3127	n:10000
KS ci ratio: 8.383558e-02	ci left: 1.718257e-01	ci right 1.869615e-01	k: 1793	n:10000
CACNA1G   10000 perm   3 sec   (3554 perm/sec)   p_kst 1.793000e-01   p_cons 3.127000e-01   p_joint 2.766000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1G.10_7553_10000_0.1793_0.3127_0.2766.png
                gene_name: CACNA1G
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 25 percent done.
C9orf93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.536657e-02	ci left: 3.245569e-01	ci right 3.431400e-01	k: 3338	n:10000
Cons ci ratio: 1.103187e-01	ci left: 1.058826e-01	ci right 1.183444e-01	k: 1120	n:10000
KS ci ratio: 2.405090e-02	ci left: 7.176482e-01	ci right 7.352197e-01	k: 7265	n:10000
C9orf93   10000 perm   2 sec   (4342 perm/sec)   p_kst 7.265000e-01   p_cons 1.120000e-01   p_joint 3.338000e-01

Joint ci ratio: 4.195575e-02	ci left: 2.974302e-01	ci right 3.102269e-01	k: 6076	n:20000
Cons ci ratio: 7.773546e-02	ci left: 1.083981e-01	ci right 1.172148e-01	k: 2255	n:20000
KS ci ratio: 1.794061e-02	ci left: 6.983737e-01	ci right 7.110667e-01	k: 14095	n:20000
C9orf93   20000 perm   5 sec   (4058 perm/sec)   p_kst 7.047500e-01   p_cons 1.127500e-01   p_joint 3.038000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf93.9_4081_20000_0.70475_0.11275_0.3038.png
                gene_name: C9orf93
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 27 percent done.
CACNA1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.047050e-02	ci left: 2.279029e-01	ci right 2.446510e-01	k: 2362	n:10000
Cons ci ratio: 1.070647e-01	ci left: 1.118366e-01	ci right 1.245868e-01	k: 1181	n:10000
KS ci ratio: 2.904749e-02	ci left: 6.360330e-01	ci right 6.548822e-01	k: 6455	n:10000
CACNA1D   10000 perm   3 sec   (3390 perm/sec)   p_kst 6.455000e-01   p_cons 1.181000e-01   p_joint 2.362000e-01

Joint ci ratio: 3.707481e-02	ci left: 3.518497e-01	ci right 3.651914e-01	k: 7170	n:20000
Cons ci ratio: 7.355390e-02	ci left: 1.197574e-01	ci right 1.289521e-01	k: 2486	n:20000
KS ci ratio: 2.147427e-02	ci left: 6.181474e-01	ci right 6.316163e-01	k: 12498	n:20000
CACNA1D   20000 perm   6 sec   (3238 perm/sec)   p_kst 6.249000e-01   p_cons 1.243000e-01   p_joint 3.585000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1D.8_6850_20000_0.6249_0.1243_0.3585.png
                gene_name: CACNA1D
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 29 percent done.
CACNG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.601820e-01	ci left: 5.195823e-02	ci right 6.110226e-02	k: 564	n:10000
Cons ci ratio: 4.515205e-02	ci left: 4.199692e-01	ci right 4.394718e-01	k: 4297	n:10000
KS ci ratio: 2.288572e-01	ci left: 2.523219e-02	ci right 3.184628e-02	k: 284	n:10000
CACNG3   10000 perm   2 sec   (5441 perm/sec)   p_kst 2.840000e-02   p_cons 4.297000e-01   p_joint 5.640000e-02

Joint ci ratio: 8.747182e-02	ci left: 8.724471e-02	ci right 9.527459e-02	k: 1824	n:20000
Cons ci ratio: 3.430110e-02	ci left: 3.882157e-01	ci right 4.018149e-01	k: 7900	n:20000
KS ci ratio: 1.585670e-01	ci left: 2.729474e-02	ci right 3.204331e-02	k: 592	n:20000
CACNG3   20000 perm   4 sec   (4846 perm/sec)   p_kst 2.960000e-02   p_cons 3.950000e-01   p_joint 9.120000e-02

Joint ci ratio: 9.659946e-02	ci left: 4.951439e-02	ci right 5.457281e-02	k: 1560	n:30000
Cons ci ratio: 2.817633e-02	ci left: 3.866026e-01	ci right 3.976849e-01	k: 11764	n:30000
KS ci ratio: 1.319761e-01	ci left: 2.667845e-02	ci right 3.048025e-02	k: 856	n:30000
CACNG3   30000 perm   6 sec   (4669 perm/sec)   p_kst 2.853333e-02   p_cons 3.921333e-01   p_joint 5.200000e-02

Joint ci ratio: 8.688362e-02	ci left: 4.631721e-02	ci right 5.054866e-02	k: 1936	n:40000
Cons ci ratio: 2.433966e-02	ci left: 3.885582e-01	ci right 3.981572e-01	k: 15734	n:40000
KS ci ratio: 1.128627e-01	ci left: 2.762041e-02	ci right 3.094839e-02	k: 1170	n:40000
CACNG3   40000 perm   9 sec   (4577 perm/sec)   p_kst 2.925000e-02   p_cons 3.933500e-01   p_joint 4.840000e-02

Joint ci ratio: 7.229131e-02	ci left: 5.352868e-02	ci right 5.756312e-02	k: 2776	n:50000
Cons ci ratio: 2.173336e-02	ci left: 3.898729e-01	ci right 3.984593e-01	k: 19708	n:50000
KS ci ratio: 9.971753e-02	ci left: 2.848307e-02	ci right 3.149183e-02	k: 1498	n:50000
CACNG3   50000 perm   11 sec   (4493 perm/sec)   p_kst 2.996000e-02   p_cons 3.941600e-01   p_joint 5.552000e-02

Outputting figure to mutsig2_images.part000000000028/CACNG3.8_964_50000_0.02996_0.39416_0.05552.png
                gene_name: CACNG3
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.058 

Current progress: 31 percent done.
CACNA2D3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.059551e-02	ci left: 1.835333e-01	ci right 1.990470e-01	k: 1912	n:10000
Cons ci ratio: 6.732082e-02	ci left: 2.446012e-01	ci right 2.617428e-01	k: 2531	n:10000
KS ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
CACNA2D3   10000 perm   2 sec   (5083 perm/sec)   p_kst 1.651000e-01   p_cons 2.531000e-01   p_joint 1.912000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA2D3.6_3428_10000_0.1651_0.2531_0.1912.png
                gene_name: CACNA2D3
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 33 percent done.
CACNB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.540060e-02	ci left: 2.555781e-01	ci right 2.729595e-01	k: 2642	n:10000
Cons ci ratio: 1.820536e-02	ci left: 8.149692e-01	ci right 8.300424e-01	k: 8226	n:10000
KS ci ratio: 1.103741e-01	ci left: 1.057850e-01	ci right 1.182420e-01	k: 1119	n:10000
CACNB2   10000 perm   2 sec   (5303 perm/sec)   p_kst 1.119000e-01   p_cons 8.226000e-01   p_joint 2.642000e-01

Joint ci ratio: 5.824552e-02	ci left: 1.792442e-01	ci right 1.900476e-01	k: 3692	n:20000
Cons ci ratio: 1.274240e-02	ci left: 8.202183e-01	ci right 8.307868e-01	k: 16511	n:20000
KS ci ratio: 7.791074e-02	ci left: 1.079558e-01	ci right 1.167573e-01	k: 2246	n:20000
CACNB2   20000 perm   4 sec   (4720 perm/sec)   p_kst 1.123000e-01   p_cons 8.255500e-01   p_joint 1.846000e-01

Outputting figure to mutsig2_images.part000000000028/CACNB2.6_2349_20000_0.1123_0.82555_0.1846.png
                gene_name: CACNB2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 35 percent done.
CACNA1I
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.544133e-02	ci left: 3.239612e-01	ci right 3.425360e-01	k: 3332	n:10000
Cons ci ratio: 9.896889e-02	ci left: 1.288487e-01	ci right 1.423643e-01	k: 1355	n:10000
KS ci ratio: 3.198987e-02	ci left: 5.905209e-01	ci right 6.098207e-01	k: 6002	n:10000
CACNA1I   10000 perm   3 sec   (3969 perm/sec)   p_kst 6.002000e-01   p_cons 1.355000e-01   p_joint 3.332000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1I.5_6820_10000_0.6002_0.1355_0.3332.png
                gene_name: CACNA1I
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 38 percent done.
CACNG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.138447e-02	ci left: 1.482523e-01	ci right 1.625490e-01	k: 1553	n:10000
Cons ci ratio: 4.988129e-02	ci left: 3.721640e-01	ci right 3.913049e-01	k: 3817	n:10000
KS ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
CACNG5   10000 perm   2 sec   (5384 perm/sec)   p_kst 1.050000e-01   p_cons 3.817000e-01   p_joint 1.553000e-01

Joint ci ratio: 6.435016e-02	ci left: 1.514405e-01	ci right 1.615596e-01	k: 3129	n:20000
Cons ci ratio: 3.533853e-02	ci left: 3.741128e-01	ci right 3.876218e-01	k: 7617	n:20000
KS ci ratio: 8.109712e-02	ci left: 1.003422e-01	ci right 1.088731e-01	k: 2091	n:20000
CACNG5   20000 perm   4 sec   (5062 perm/sec)   p_kst 1.045500e-01   p_cons 3.808500e-01   p_joint 1.564500e-01

Outputting figure to mutsig2_images.part000000000028/CACNG5.5_1165_20000_0.10455_0.38085_0.15645.png
                gene_name: CACNG5
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 40 percent done.
C9orf43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.503224e-02	ci left: 1.384471e-01	ci right 1.523602e-01	k: 1453	n:10000
Cons ci ratio: 2.410536e-02	ci left: 7.167396e-01	ci right 7.343289e-01	k: 7256	n:10000
KS ci ratio: 1.651998e-01	ci left: 4.888186e-02	ci right 5.778061e-02	k: 532	n:10000
C9orf43   10000 perm   2 sec   (6003 perm/sec)   p_kst 5.320000e-02   p_cons 7.256000e-01   p_joint 1.453000e-01

Joint ci ratio: 6.495396e-02	ci left: 1.490232e-01	ci right 1.590776e-01	k: 3080	n:20000
Cons ci ratio: 1.701328e-02	ci left: 7.201136e-01	ci right 7.325205e-01	k: 14527	n:20000
KS ci ratio: 1.157310e-01	ci left: 5.110214e-02	ci right 5.742824e-02	k: 1084	n:20000
C9orf43   20000 perm   4 sec   (5282 perm/sec)   p_kst 5.420000e-02   p_cons 7.263500e-01   p_joint 1.540000e-01

Joint ci ratio: 4.970841e-02	ci left: 1.674148e-01	ci right 1.759822e-01	k: 5150	n:30000
Cons ci ratio: 1.435986e-02	ci left: 7.078105e-01	ci right 7.180816e-01	k: 21389	n:30000
KS ci ratio: 9.702640e-02	ci left: 4.909101e-02	ci right 5.412960e-02	k: 1547	n:30000
C9orf43   30000 perm   6 sec   (4980 perm/sec)   p_kst 5.156667e-02   p_cons 7.129667e-01   p_joint 1.716667e-01

Outputting figure to mutsig2_images.part000000000028/C9orf43.4_1438_30000_0.051567_0.71297_0.17167.png
                gene_name: C9orf43
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 42 percent done.
CA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.979401e-02	ci left: 6.242697e-01	ci right 6.432523e-01	k: 6338	n:10000
KS ci ratio: 2.565491e-02	ci left: 6.910118e-01	ci right 7.090715e-01	k: 7001	n:10000
CA10   10000 perm   2 sec   (5642 perm/sec)   p_kst 7.001000e-01   p_cons 6.338000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000028/CA10.4_1023_10000_0.7001_0.6338_1.png
                gene_name: CA10
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
CABYR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.731480e-02	ci left: 1.327651e-01	ci right 1.464456e-01	k: 1395	n:10000
Cons ci ratio: 6.205820e-02	ci left: 2.762651e-01	ci right 2.940602e-01	k: 2851	n:10000
KS ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
CABYR   10000 perm   2 sec   (5599 perm/sec)   p_kst 7.400000e-02   p_cons 2.851000e-01   p_joint 1.395000e-01

Joint ci ratio: 8.394926e-02	ci left: 9.415843e-02	ci right 1.024588e-01	k: 1965	n:20000
Cons ci ratio: 4.291725e-02	ci left: 2.879893e-01	ci right 3.006705e-01	k: 5886	n:20000
KS ci ratio: 9.709772e-02	ci left: 7.167988e-02	ci right 7.904415e-02	k: 1506	n:20000
CABYR   20000 perm   4 sec   (4514 perm/sec)   p_kst 7.530000e-02   p_cons 2.943000e-01   p_joint 9.825000e-02

Outputting figure to mutsig2_images.part000000000028/CABYR.4_2101_20000_0.0753_0.2943_0.09825.png
                gene_name: CABYR
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.10 

Current progress: 46 percent done.
C9orf41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.738372e-02	ci left: 1.962376e-01	ci right 2.121351e-01	k: 2041	n:10000
Cons ci ratio: 9.747717e-02	ci left: 1.323733e-01	ci right 1.460376e-01	k: 1391	n:10000
KS ci ratio: 8.481661e-02	ci left: 1.684829e-01	ci right 1.835063e-01	k: 1759	n:10000
C9orf41   10000 perm   2 sec   (5839 perm/sec)   p_kst 1.759000e-01   p_cons 1.391000e-01   p_joint 2.041000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf41.3_1262_10000_0.1759_0.1391_0.2041.png
                gene_name: C9orf41
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 48 percent done.
C9orf80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.675337e-02	ci left: 6.729719e-01	ci right 6.913219e-01	k: 6822	n:10000
Cons ci ratio: 2.969783e-02	ci left: 6.257775e-01	ci right 6.447437e-01	k: 6353	n:10000
KS ci ratio: 3.933545e-02	ci left: 4.883520e-01	ci right 5.080491e-01	k: 4982	n:10000
C9orf80   10000 perm   2 sec   (6086 perm/sec)   p_kst 4.982000e-01   p_cons 6.353000e-01   p_joint 6.822000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf80.3_331_10000_0.4982_0.6353_0.6822.png
                gene_name: C9orf80
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 50 percent done.
C9orf96
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.551763e-02	ci left: 5.392844e-01	ci right 5.588870e-01	k: 5491	n:10000
Cons ci ratio: 6.141010e-02	ci left: 2.805242e-01	ci right 2.983986e-01	k: 2894	n:10000
KS ci ratio: 3.617512e-02	ci left: 5.301711e-01	ci right 5.498056e-01	k: 5400	n:10000
C9orf96   10000 perm   2 sec   (5473 perm/sec)   p_kst 5.400000e-01   p_cons 2.894000e-01   p_joint 5.491000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf96.3_2115_10000_0.54_0.2894_0.5491.png
                gene_name: C9orf96
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 52 percent done.
C9orf98
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.217566e-02	ci left: 4.535883e-01	ci right 4.732330e-01	k: 4634	n:10000
Cons ci ratio: 4.028294e-02	ci left: 4.764591e-01	ci right 4.961489e-01	k: 4863	n:10000
KS ci ratio: 5.632616e-02	ci left: 3.170130e-01	ci right 3.354883e-01	k: 3262	n:10000
C9orf98   10000 perm   2 sec   (5815 perm/sec)   p_kst 3.262000e-01   p_cons 4.863000e-01   p_joint 4.634000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf98.3_1492_10000_0.3262_0.4863_0.4634.png
                gene_name: C9orf98
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 54 percent done.
CA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.365803e-01	ci left: 7.088017e-02	ci right 8.136835e-02	k: 760	n:10000
Cons ci ratio: 4.449803e-01	ci left: 5.992474e-03	ci right 9.503426e-03	k: 76	n:10000
KS ci ratio: 4.189691e-02	ci left: 4.568828e-01	ci right 4.765366e-01	k: 4667	n:10000
CA8   10000 perm   2 sec   (5697 perm/sec)   p_kst 4.667000e-01   p_cons 7.600000e-03   p_joint 7.600000e-02

Joint ci ratio: 5.294843e-02	ci left: 2.093726e-01	ci right 2.208103e-01	k: 4301	n:20000
Cons ci ratio: 3.243481e-01	ci left: 6.075351e-03	ci right 8.471257e-03	k: 144	n:20000
KS ci ratio: 3.018138e-02	ci left: 4.505772e-01	ci right 4.644352e-01	k: 9150	n:20000
CA8   20000 perm   4 sec   (5078 perm/sec)   p_kst 4.575000e-01   p_cons 7.200000e-03   p_joint 2.150500e-01

Joint ci ratio: 4.031076e-02	ci left: 2.348118e-01	ci right 2.445054e-01	k: 7189	n:30000
Cons ci ratio: 2.695528e-01	ci left: 6.056795e-03	ci right 7.973879e-03	k: 209	n:30000
KS ci ratio: 2.470168e-02	ci left: 4.506848e-01	ci right 4.619903e-01	k: 13690	n:30000
CA8   30000 perm   6 sec   (4906 perm/sec)   p_kst 4.563333e-01   p_cons 6.966667e-03   p_joint 2.396333e-01

Joint ci ratio: 3.458445e-02	ci left: 2.388777e-01	ci right 2.473096e-01	k: 9723	n:40000
Cons ci ratio: 2.355680e-01	ci left: 6.065168e-03	ci right 7.707648e-03	k: 274	n:40000
KS ci ratio: 2.134343e-02	ci left: 4.525836e-01	ci right 4.623726e-01	k: 18299	n:40000
CA8   40000 perm   9 sec   (4685 perm/sec)   p_kst 4.574750e-01   p_cons 6.850000e-03   p_joint 2.430750e-01

Joint ci ratio: 3.033497e-02	ci left: 2.465474e-01	ci right 2.541616e-01	k: 12517	n:50000
Cons ci ratio: 2.106219e-01	ci left: 6.155261e-03	ci right 7.622868e-03	k: 343	n:50000
KS ci ratio: 1.908549e-02	ci left: 4.532257e-01	ci right 4.619792e-01	k: 22880	n:50000
CA8   50000 perm   11 sec   (4475 perm/sec)   p_kst 4.576000e-01   p_cons 6.860000e-03   p_joint 2.503400e-01

Joint ci ratio: 2.769389e-02	ci left: 2.468543e-01	ci right 2.538032e-01	k: 15019	n:60000
Cons ci ratio: 1.912934e-01	ci left: 6.284992e-03	ci right 7.630030e-03	k: 416	n:60000
KS ci ratio: 1.746135e-02	ci left: 4.525083e-01	ci right 4.604959e-01	k: 27390	n:60000
CA8   60000 perm   13 sec   (4453 perm/sec)   p_kst 4.565000e-01   p_cons 6.933333e-03   p_joint 2.503167e-01

Joint ci ratio: 2.564380e-02	ci left: 2.470516e-01	ci right 2.534834e-01	k: 17518	n:70000
Cons ci ratio: 1.775635e-01	ci left: 6.300142e-03	ci right 7.541260e-03	k: 483	n:70000
KS ci ratio: 1.615822e-02	ci left: 4.530475e-01	ci right 4.604418e-01	k: 31972	n:70000
CA8   70000 perm   16 sec   (4317 perm/sec)   p_kst 4.567429e-01   p_cons 6.900000e-03   p_joint 2.502571e-01

Joint ci ratio: 2.395305e-02	ci left: 2.477991e-01	ci right 2.538190e-01	k: 20064	n:80000
Cons ci ratio: 1.652170e-01	ci left: 6.409979e-03	ci right 7.576204e-03	k: 558	n:80000
KS ci ratio: 1.506999e-02	ci left: 4.547552e-01	ci right 4.616729e-01	k: 36657	n:80000
CA8   80000 perm   19 sec   (4211 perm/sec)   p_kst 4.582125e-01   p_cons 6.975000e-03   p_joint 2.508000e-01

Joint ci ratio: 2.031755e-02	ci left: 2.896067e-01	ci right 2.955622e-01	k: 26332	n:90000
Cons ci ratio: 1.546424e-01	ci left: 6.540469e-03	ci right 7.647214e-03	k: 637	n:90000
KS ci ratio: 1.423940e-02	ci left: 4.538635e-01	ci right 4.603837e-01	k: 41141	n:90000
CA8   90000 perm   22 sec   (4166 perm/sec)   p_kst 4.571222e-01   p_cons 7.077778e-03   p_joint 2.925778e-01

Joint ci ratio: 1.859210e-02	ci left: 3.048699e-01	ci right 3.106012e-01	k: 30773	n:100000
Cons ci ratio: 1.460739e-01	ci left: 6.627491e-03	ci right 7.681399e-03	k: 714	n:100000
KS ci ratio: 1.350359e-02	ci left: 4.542186e-01	ci right 4.604039e-01	k: 45731	n:100000
CA8   100000 perm   24 sec   (4115 perm/sec)   p_kst 4.573100e-01   p_cons 7.140000e-03   p_joint 3.077300e-01

Joint ci ratio: 1.774141e-02	ci left: 3.046557e-01	ci right 3.101181e-01	k: 33812	n:110000
Cons ci ratio: 1.404043e-01	ci left: 6.542116e-03	ci right 7.538687e-03	k: 773	n:110000
KS ci ratio: 1.289788e-02	ci left: 4.534895e-01	ci right 4.593855e-01	k: 50208	n:110000
CA8   110000 perm   27 sec   (4085 perm/sec)   p_kst 4.564364e-01   p_cons 7.027273e-03   p_joint 3.073818e-01

Joint ci ratio: 1.700871e-02	ci left: 3.042079e-01	ci right 3.094348e-01	k: 36818	n:120000
Cons ci ratio: 1.342959e-01	ci left: 6.576335e-03	ci right 7.531054e-03	k: 845	n:120000
KS ci ratio: 1.235115e-02	ci left: 4.535204e-01	ci right 4.591650e-01	k: 54761	n:120000
CA8   120000 perm   30 sec   (4050 perm/sec)   p_kst 4.563417e-01   p_cons 7.041667e-03   p_joint 3.068167e-01

Joint ci ratio: 1.651091e-02	ci left: 2.999499e-01	ci right 3.049512e-01	k: 39318	n:130000
Cons ci ratio: 1.275295e-01	ci left: 6.755028e-03	ci right 7.682541e-03	k: 937	n:130000
KS ci ratio: 1.186136e-02	ci left: 4.538510e-01	ci right 4.592740e-01	k: 59353	n:130000
CA8   130000 perm   32 sec   (4007 perm/sec)   p_kst 4.565615e-01   p_cons 7.207692e-03   p_joint 3.024462e-01

Joint ci ratio: 1.571731e-02	ci left: 3.052044e-01	ci right 3.100465e-01	k: 43067	n:140000
Cons ci ratio: 1.226555e-01	ci left: 6.798408e-03	ci right 7.693611e-03	k: 1013	n:140000
KS ci ratio: 1.141373e-02	ci left: 4.546521e-01	ci right 4.598782e-01	k: 64017	n:140000
CA8   140000 perm   35 sec   (3950 perm/sec)   p_kst 4.572643e-01   p_cons 7.235714e-03   p_joint 3.076214e-01

Joint ci ratio: 1.519394e-02	ci left: 3.050188e-01	ci right 3.096953e-01	k: 46103	n:150000
Cons ci ratio: 1.180827e-01	ci left: 6.862472e-03	ci right 7.730070e-03	k: 1093	n:150000
KS ci ratio: 1.102563e-02	ci left: 4.547898e-01	ci right 4.598385e-01	k: 68597	n:150000
CA8   150000 perm   38 sec   (3907 perm/sec)   p_kst 4.573133e-01   p_cons 7.286667e-03   p_joint 3.073533e-01

Joint ci ratio: 1.472738e-02	ci left: 3.046343e-01	ci right 3.091602e-01	k: 49103	n:160000
Cons ci ratio: 1.144782e-01	ci left: 6.858343e-03	ci right 7.697161e-03	k: 1163	n:160000
KS ci ratio: 1.067527e-02	ci left: 4.548817e-01	ci right 4.597699e-01	k: 73172	n:160000
CA8   160000 perm   42 sec   (3850 perm/sec)   p_kst 4.573250e-01   p_cons 7.268750e-03   p_joint 3.068938e-01

Joint ci ratio: 1.534443e-02	ci left: 2.752726e-01	ci right 2.795350e-01	k: 47158	n:170000
Cons ci ratio: 1.107337e-01	ci left: 6.912256e-03	ci right 7.728210e-03	k: 1243	n:170000
KS ci ratio: 1.034259e-02	ci left: 4.556235e-01	ci right 4.603662e-01	k: 77859	n:170000
CA8   170000 perm   45 sec   (3804 perm/sec)   p_kst 4.579941e-01   p_cons 7.311765e-03   p_joint 2.774000e-01

Joint ci ratio: 1.490840e-02	ci left: 2.754323e-01	ci right 2.795749e-01	k: 49950	n:180000
Cons ci ratio: 1.076211e-01	ci left: 6.922725e-03	ci right 7.715489e-03	k: 1316	n:180000
KS ci ratio: 1.005355e-02	ci left: 4.555741e-01	ci right 4.601828e-01	k: 82418	n:180000
CA8   180000 perm   48 sec   (3759 perm/sec)   p_kst 4.578778e-01   p_cons 7.311111e-03   p_joint 2.775000e-01

Joint ci ratio: 1.472672e-02	ci left: 2.696167e-01	ci right 2.736219e-01	k: 51607	n:190000
Cons ci ratio: 1.048330e-01	ci left: 6.922127e-03	ci right 7.693020e-03	k: 1387	n:190000
KS ci ratio: 9.777927e-03	ci left: 4.560155e-01	ci right 4.605015e-01	k: 87069	n:190000
CA8   190000 perm   51 sec   (3715 perm/sec)   p_kst 4.582579e-01   p_cons 7.300000e-03   p_joint 2.716158e-01

Joint ci ratio: 1.436476e-02	ci left: 2.693671e-01	ci right 2.732695e-01	k: 54263	n:200000
Cons ci ratio: 1.020048e-01	ci left: 6.955940e-03	ci right 7.708446e-03	k: 1465	n:200000
KS ci ratio: 9.531843e-03	ci left: 4.559945e-01	ci right 4.603667e-01	k: 91636	n:200000
CA8   200000 perm   55 sec   (3669 perm/sec)   p_kst 4.581800e-01   p_cons 7.325000e-03   p_joint 2.713150e-01

Joint ci ratio: 1.380662e-02	ci left: 2.754668e-01	ci right 2.793012e-01	k: 58250	n:210000
Cons ci ratio: 9.936131e-02	ci left: 6.991429e-03	ci right 7.727030e-03	k: 1544	n:210000
KS ci ratio: 9.304700e-03	ci left: 4.559101e-01	ci right 4.601768e-01	k: 96189	n:210000
CA8   210000 perm   58 sec   (3623 perm/sec)   p_kst 4.580429e-01   p_cons 7.352381e-03   p_joint 2.773810e-01

Outputting figure to mutsig2_images.part000000000028/CA8.3_905_210000_0.45804_0.0073524_0.27738.png
                gene_name: CA8
               theta_stop: 0.099 
                    nperm: 210000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.0074 
      ci_cons_bounds_left: 0.0070 
     ci_cons_bounds_right: 0.0077 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.28 

Current progress: 56 percent done.
CACNA2D4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.106525e-01	ci left: 1.052972e-01	ci right 1.177301e-01	k: 1114	n:10000
Cons ci ratio: 7.225356e-02	ci left: 2.191164e-01	ci right 2.356427e-01	k: 2273	n:10000
KS ci ratio: 9.691176e-02	ci left: 1.337444e-01	ci right 1.474657e-01	k: 1405	n:10000
CACNA2D4   10000 perm   2 sec   (5119 perm/sec)   p_kst 1.405000e-01   p_cons 2.273000e-01   p_joint 1.114000e-01

Joint ci ratio: 5.615692e-02	ci left: 1.903695e-01	ci right 2.014191e-01	k: 3917	n:20000
Cons ci ratio: 5.004558e-02	ci left: 2.288403e-01	ci right 2.406369e-01	k: 4694	n:20000
KS ci ratio: 6.785568e-02	ci left: 1.381262e-01	ci right 1.478779e-01	k: 2859	n:20000
CACNA2D4   20000 perm   4 sec   (4555 perm/sec)   p_kst 1.429500e-01   p_cons 2.347000e-01   p_joint 1.958500e-01

Outputting figure to mutsig2_images.part000000000028/CACNA2D4.3_3566_20000_0.14295_0.2347_0.19585.png
                gene_name: CACNA2D4
               theta_stop: 0.068 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 58 percent done.
CACNG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.152397e-02	ci left: 1.478599e-01	ci right 1.621417e-01	k: 1549	n:10000
Cons ci ratio: 1.835874e-01	ci left: 3.958555e-02	ci right 4.768301e-02	k: 435	n:10000
KS ci ratio: 2.522805e-02	ci left: 6.980709e-01	ci right 7.160083e-01	k: 7071	n:10000
CACNG2   10000 perm   2 sec   (5790 perm/sec)   p_kst 7.071000e-01   p_cons 4.350000e-02   p_joint 1.549000e-01

Joint ci ratio: 6.465655e-02	ci left: 1.502071e-01	ci right 1.602934e-01	k: 3104	n:20000
Cons ci ratio: 1.314830e-01	ci left: 3.974595e-02	ci right 4.538802e-02	k: 850	n:20000
KS ci ratio: 1.770596e-02	ci left: 7.038573e-01	ci right 7.164815e-01	k: 14204	n:20000
CACNG2   20000 perm   4 sec   (5067 perm/sec)   p_kst 7.102000e-01   p_cons 4.250000e-02   p_joint 1.552000e-01

Joint ci ratio: 4.623897e-02	ci left: 1.887786e-01	ci right 1.977475e-01	k: 5797	n:30000
Cons ci ratio: 1.056600e-01	ci left: 4.154431e-02	ci right 4.621121e-02	k: 1315	n:30000
KS ci ratio: 1.436805e-02	ci left: 7.075760e-01	ci right 7.178495e-01	k: 21382	n:30000
CACNG2   30000 perm   6 sec   (4853 perm/sec)   p_kst 7.127333e-01   p_cons 4.383333e-02   p_joint 1.932333e-01

Joint ci ratio: 3.859758e-02	ci left: 2.010280e-01	ci right 2.089649e-01	k: 8199	n:40000
Cons ci ratio: 9.144106e-02	ci left: 4.191296e-02	ci right 4.595359e-02	k: 1756	n:40000
KS ci ratio: 1.239707e-02	ci left: 7.097948e-01	ci right 7.186741e-01	k: 28570	n:40000
CACNG2   40000 perm   9 sec   (4574 perm/sec)   p_kst 7.142500e-01   p_cons 4.390000e-02   p_joint 2.049750e-01

Outputting figure to mutsig2_images.part000000000028/CACNG2.3_988_40000_0.71425_0.0439_0.20497.png
                gene_name: CACNG2
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 60 percent done.
C9orf23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.478503e-02	ci left: 5.496035e-01	ci right 5.691619e-01	k: 5594	n:10000
Cons ci ratio: 8.241153e-02	ci left: 1.768418e-01	ci right 1.921425e-01	k: 1844	n:10000
KS ci ratio: 2.500901e-02	ci left: 7.017023e-01	ci right 7.195748e-01	k: 7107	n:10000
C9orf23   10000 perm   1 sec   (6912 perm/sec)   p_kst 7.107000e-01   p_cons 1.844000e-01   p_joint 5.594000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf23.2_496_10000_0.7107_0.1844_0.5594.png
                gene_name: C9orf23
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 62 percent done.
C9orf3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.333176e-02	ci left: 7.296672e-01	ci right 7.469937e-01	k: 7384	n:10000
Cons ci ratio: 3.649665e-02	ci left: 5.257659e-01	ci right 5.454134e-01	k: 5356	n:10000
KS ci ratio: 3.151877e-02	ci left: 5.976484e-01	ci right 6.168891e-01	k: 6073	n:10000
C9orf3   10000 perm   2 sec   (5547 perm/sec)   p_kst 6.073000e-01   p_cons 5.356000e-01   p_joint 7.384000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf3.2_2215_10000_0.6073_0.5356_0.7384.png
                gene_name: C9orf3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 65 percent done.
C9orf50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.640311e-02	ci left: 3.164175e-01	ci right 3.348842e-01	k: 3256	n:10000
Cons ci ratio: 7.474675e-02	ci left: 2.075736e-01	ci right 2.237924e-01	k: 2156	n:10000
KS ci ratio: 4.402797e-02	ci left: 4.323342e-01	ci right 4.518996e-01	k: 4421	n:10000
C9orf50   10000 perm   2 sec   (6195 perm/sec)   p_kst 4.421000e-01   p_cons 2.156000e-01   p_joint 3.256000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf50.2_1324_10000_0.4421_0.2156_0.3256.png
                gene_name: C9orf50
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 67 percent done.
C9orf68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.461602e-02	ci left: 5.520085e-01	ci right 5.715555e-01	k: 5618	n:10000
Cons ci ratio: 8.372187e-02	ci left: 1.722191e-01	ci right 1.873680e-01	k: 1797	n:10000
KS ci ratio: 5.041374e-02	ci left: 3.671899e-01	ci right 3.862820e-01	k: 3767	n:10000
C9orf68   10000 perm   2 sec   (5450 perm/sec)   p_kst 3.767000e-01   p_cons 1.797000e-01   p_joint 5.618000e-01

Outputting figure to mutsig2_images.part000000000028/C9orf68.2_1041_10000_0.3767_0.1797_0.5618.png
                gene_name: C9orf68
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 69 percent done.
C9orf72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.469315e-02	ci left: 7.069489e-01	ci right 7.247252e-01	k: 7159	n:10000
KS ci ratio: 2.403880e-02	ci left: 7.178502e-01	ci right 7.354176e-01	k: 7267	n:10000
C9orf72   10000 perm   2 sec   (5486 perm/sec)   p_kst 7.267000e-01   p_cons 7.159000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000028/C9orf72.2_1490_10000_0.7267_0.7159_1.png
                gene_name: C9orf72
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
CA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.346460e-02	ci left: 7.274446e-01	ci right 7.448176e-01	k: 7362	n:10000
KS ci ratio: 1.817418e-02	ci left: 8.154773e-01	ci right 8.305340e-01	k: 8231	n:10000
CA11   10000 perm   2 sec   (5867 perm/sec)   p_kst 8.231000e-01   p_cons 7.362000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000028/CA11.2_1023_10000_0.8231_0.7362_1.png
                gene_name: CA11
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
CA14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.651866e-02	ci left: 5.254655e-01	ci right 5.451139e-01	k: 5353	n:10000
Cons ci ratio: 1.678445e-02	ci left: 8.378583e-01	ci right 8.521401e-01	k: 8451	n:10000
KS ci ratio: 4.954487e-02	ci left: 3.753480e-01	ci right 3.945190e-01	k: 3849	n:10000
CA14   10000 perm   2 sec   (5531 perm/sec)   p_kst 3.849000e-01   p_cons 8.451000e-01   p_joint 5.353000e-01

Outputting figure to mutsig2_images.part000000000028/CA14.2_1058_10000_0.3849_0.8451_0.5353.png
                gene_name: CA14
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 75 percent done.
CA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.348773e-02	ci left: 4.384192e-01	ci right 4.580110e-01	k: 4482	n:10000
Cons ci ratio: 9.028594e-03	ci left: 9.452335e-01	ci right 9.539023e-01	k: 9497	n:10000
KS ci ratio: 4.973370e-02	ci left: 3.735570e-01	ci right 3.927111e-01	k: 3831	n:10000
CA3   10000 perm   1 sec   (6968 perm/sec)   p_kst 3.831000e-01   p_cons 9.497000e-01   p_joint 4.482000e-01

Outputting figure to mutsig2_images.part000000000028/CA3.2_811_10000_0.3831_0.9497_0.4482.png
                gene_name: CA3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 77 percent done.
CA5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.889150e-02	ci left: 1.555149e-01	ci right 1.700821e-01	k: 1627	n:10000
Cons ci ratio: 1.376601e-01	ci left: 6.981515e-02	ci right 8.023404e-02	k: 749	n:10000
KS ci ratio: 2.888270e-02	ci left: 6.386479e-01	ci right 6.574658e-01	k: 6481	n:10000
CA5A   10000 perm   2 sec   (6306 perm/sec)   p_kst 6.481000e-01   p_cons 7.490000e-02   p_joint 1.627000e-01

Joint ci ratio: 7.476036e-02	ci left: 1.163138e-01	ci right 1.253968e-01	k: 2416	n:20000
Cons ci ratio: 9.688928e-02	ci left: 7.197315e-02	ci right 7.935078e-02	k: 1512	n:20000
KS ci ratio: 2.038822e-02	ci left: 6.422386e-01	ci right 6.555181e-01	k: 12978	n:20000
CA5A   20000 perm   4 sec   (5469 perm/sec)   p_kst 6.489000e-01   p_cons 7.560000e-02   p_joint 1.208000e-01

Outputting figure to mutsig2_images.part000000000028/CA5A.2_946_20000_0.6489_0.0756_0.1208.png
                gene_name: CA5A
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 79 percent done.
CA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.696871e-02	ci left: 5.193596e-01	ci right 5.390234e-01	k: 5292	n:10000
Cons ci ratio: 5.154889e-02	ci left: 3.568471e-01	ci right 3.758308e-01	k: 3663	n:10000
KS ci ratio: 5.397717e-02	ci left: 3.358779e-01	ci right 3.546124e-01	k: 3452	n:10000
CA6   10000 perm   1 sec   (6806 perm/sec)   p_kst 3.452000e-01   p_cons 3.663000e-01   p_joint 5.292000e-01

Outputting figure to mutsig2_images.part000000000028/CA6.2_959_10000_0.3452_0.3663_0.5292.png
                gene_name: CA6
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 81 percent done.
CA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.312913e-02	ci left: 4.425100e-01	ci right 4.621178e-01	k: 4523	n:10000
Cons ci ratio: 5.546629e-02	ci left: 3.237627e-01	ci right 3.423347e-01	k: 3330	n:10000
KS ci ratio: 5.092200e-02	ci left: 3.625152e-01	ci right 3.815594e-01	k: 3720	n:10000
CA9   10000 perm   2 sec   (6456 perm/sec)   p_kst 3.720000e-01   p_cons 3.330000e-01   p_joint 4.523000e-01

Outputting figure to mutsig2_images.part000000000028/CA9.2_1424_10000_0.372_0.333_0.4523.png
                gene_name: CA9
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 83 percent done.
CAB39L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.615181e-02	ci left: 8.478437e-01	ci right 8.617489e-01	k: 8549	n:10000
KS ci ratio: 1.717362e-02	ci left: 8.316480e-01	ci right 8.461540e-01	k: 8390	n:10000
CAB39L   10000 perm   2 sec   (5504 perm/sec)   p_kst 8.390000e-01   p_cons 8.549000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000028/CAB39L.2_1046_10000_0.839_0.8549_1.png
                gene_name: CAB39L
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
CABP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.446268e-02	ci left: 7.107838e-01	ci right 7.284881e-01	k: 7197	n:10000
Cons ci ratio: 3.804326e-02	ci left: 5.050514e-01	ci right 5.247399e-01	k: 5149	n:10000
KS ci ratio: 6.740994e-02	ci left: 2.441069e-01	ci right 2.612374e-01	k: 2526	n:10000
CABP4   10000 perm   1 sec   (6877 perm/sec)   p_kst 2.526000e-01   p_cons 5.149000e-01   p_joint 7.197000e-01

Outputting figure to mutsig2_images.part000000000028/CABP4.2_852_10000_0.2526_0.5149_0.7197.png
                gene_name: CABP4
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 88 percent done.
CABP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.171684e-03	ci left: 9.727020e-01	ci right 9.788166e-01	k: 9759	n:10000
Cons ci ratio: 2.394806e-02	ci left: 7.193647e-01	ci right 7.369022e-01	k: 7282	n:10000
KS ci ratio: 2.170830e-02	ci left: 7.568669e-01	ci right 7.735784e-01	k: 7653	n:10000
CABP5   10000 perm   2 sec   (5793 perm/sec)   p_kst 7.653000e-01   p_cons 7.282000e-01   p_joint 9.759000e-01

Outputting figure to mutsig2_images.part000000000028/CABP5.2_546_10000_0.7653_0.7282_0.9759.png
                gene_name: CABP5
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 90 percent done.
CACNA1H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.967958e-02	ci left: 2.923162e-01	ci right 3.103997e-01	k: 3013	n:10000
Cons ci ratio: 4.359337e-02	ci left: 4.372220e-01	ci right 4.568089e-01	k: 4470	n:10000
KS ci ratio: 8.866392e-02	ci left: 1.562022e-01	ci right 1.707944e-01	k: 1634	n:10000
CACNA1H   10000 perm   2 sec   (4360 perm/sec)   p_kst 1.634000e-01   p_cons 4.470000e-01   p_joint 3.013000e-01

Outputting figure to mutsig2_images.part000000000028/CACNA1H.2_7198_10000_0.1634_0.447_0.3013.png
                gene_name: CACNA1H
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 92 percent done.
CACNB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.568265e-01	ci left: 5.417192e-02	ci right 6.348715e-02	k: 587	n:10000
KS ci ratio: 1.166900e-01	ci left: 9.545302e-02	ci right 1.073803e-01	k: 1013	n:10000
CACNB3   10000 perm   2 sec   (6430 perm/sec)   p_kst 1.013000e-01   p_cons 5.870000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.095169e-01	ci left: 5.689394e-02	ci right 6.353464e-02	k: 1203	n:20000
KS ci ratio: 8.478879e-02	ci left: 9.244163e-02	ci right 1.006761e-01	k: 1930	n:20000
CACNB3   20000 perm   4 sec   (5633 perm/sec)   p_kst 9.650000e-02   p_cons 6.015000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 8.876887e-02	ci left: 5.831772e-02	ci right 6.376768e-02	k: 1830	n:30000
KS ci ratio: 6.826270e-02	ci left: 9.564266e-02	ci right 1.024352e-01	k: 2970	n:30000
CACNB3   30000 perm   6 sec   (5385 perm/sec)   p_kst 9.900000e-02   p_cons 6.100000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000028/CACNB3.2_1507_30000_0.099_0.061_1.png
                gene_name: CACNB3
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.064 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
CACNB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.523504e-02	ci left: 4.190720e-01	ci right 4.385695e-01	k: 4288	n:10000
Cons ci ratio: 4.117193e-02	ci left: 4.655704e-01	ci right 4.852439e-01	k: 4754	n:10000
KS ci ratio: 8.866392e-02	ci left: 1.562022e-01	ci right 1.707944e-01	k: 1634	n:10000
CACNB4   10000 perm   2 sec   (5701 perm/sec)   p_kst 1.634000e-01   p_cons 4.754000e-01   p_joint 4.288000e-01

Outputting figure to mutsig2_images.part000000000028/CACNB4.2_1681_10000_0.1634_0.4754_0.4288.png
                gene_name: CACNB4
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 96 percent done.
CACNG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.898779e-03	ci left: 9.881795e-01	ci right 9.921271e-01	k: 9903	n:10000
Cons ci ratio: 1.304874e-02	ci left: 8.942609e-01	ci right 9.061049e-01	k: 9003	n:10000
KS ci ratio: 3.491928e-02	ci left: 5.476996e-01	ci right 5.672669e-01	k: 5575	n:10000
CACNG1   10000 perm   2 sec   (6378 perm/sec)   p_kst 5.575000e-01   p_cons 9.003000e-01   p_joint 9.903000e-01

Outputting figure to mutsig2_images.part000000000028/CACNG1.2_685_10000_0.5575_0.9003_0.9903.png
                gene_name: CACNG1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 98 percent done.
CACNG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.728785e-02	ci left: 8.298162e-01	ci right 8.443869e-01	k: 8372	n:10000
Cons ci ratio: 1.157396e-01	ci left: 9.691393e-02	ci right 1.089185e-01	k: 1028	n:10000
KS ci ratio: 1.423087e-02	ci left: 8.771523e-01	ci right 8.898233e-01	k: 8836	n:10000
CACNG4   10000 perm   2 sec   (5368 perm/sec)   p_kst 8.836000e-01   p_cons 1.028000e-01   p_joint 8.372000e-01

Joint ci ratio: 5.865496e-02	ci left: 1.771683e-01	ci right 1.879242e-01	k: 3650	n:20000
Cons ci ratio: 8.406786e-02	ci left: 9.391315e-02	ci right 1.022041e-01	k: 1960	n:20000
KS ci ratio: 9.988138e-03	ci left: 8.805993e-01	ci right 8.894885e-01	k: 17702	n:20000
CACNG4   20000 perm   4 sec   (5120 perm/sec)   p_kst 8.851000e-01   p_cons 9.800000e-02   p_joint 1.825000e-01

Outputting figure to mutsig2_images.part000000000028/CACNG4.2_1000_20000_0.8851_0.098_0.1825.png
                gene_name: CACNG4
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000028
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 28 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1647>
Subject: Job 9893870: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1647>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000029> was used as the working directory.
Started at Fri Oct  5 23:59:51 2012
Results reported at Sat Oct  6 00:11:24 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000029.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000029.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 29  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000029.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    707.92 sec.
    Max Memory :      3483 MB
    Max Swap   :      5897 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
29
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 29
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 29: processing genes 2525 - 2614
Calculating significance of each gene.
Using projection method.
2525	CACNG6	7.407251e-01
2526	CACNG7	1.429079e-03
2527	CACNG8	6.799505e-01
2528	CACYBP	3.601206e-01
2529	CAD	6.144009e-01
2530	CADM1	1.366591e-03
2531	CADM2	3.419499e-03
2532	CADM3	1.878129e-02
2533	CADM4	7.870912e-01
2534	CADPS	4.443862e-03
2535	CADPS2	6.122687e-01
2536	CAGE1	8.967762e-01
2537	CALB1	1
2538	CALB2	2.782322e-01
2539	CALCA	1.017724e-02
2540	CALCB	5.849080e-01
2541	CALCOCO1	2.106340e-01
2542	CALCOCO2	1.169439e-01
2543	CALCR	9.846543e-02
2544	CALCRL	3.446722e-03
2545	CALD1	3.913212e-02
2546	CALHM1	7.905020e-01
2547	CALHM2	1
2548	CALM1	1
2549	CALM2	1
2550	CALM3	1
2551	CALML3	1
2552	CALML4	6.561498e-01
2553	CALML5	1.926333e-01
2554	CALML6	1
2555	CALN1	1.028947e-01
2556	CALR	7.185415e-01
2557	CALR3	6.129413e-01
2558	CALU	5.338469e-01
2559	CALY	1
2560	CAMK1	7.486084e-01
2561	CAMK1D	1.715567e-01
2562	CAMK1G	5.115354e-02
2563	CAMK2A	8.575036e-01
2564	CAMK2B	7.678944e-01
2565	CAMK2D	2.159920e-01
2566	CAMK2G	7.483267e-01
2567	CAMK2N1	1
2568	CAMK2N2	1
2569	CAMK4	6.089225e-01
2570	CAMKK1	8.926085e-01
2571	CAMKK2	9.527543e-01
2572	CAMKV	3.229698e-01
2573	CAMLG	1
2574	CAMP	1
2575	CAMSAP1	7.406801e-01
2576	CAMSAP1L1	9.695656e-01
2577	CAMTA1	6.313498e-01
2578	CAMTA2	7.274613e-01
2579	CAND1	1.093876e-01
2580	CAND2	7.340031e-01
2581	CANT1	1
2582	CANX	5.125517e-01
2583	CAP1	9.322089e-01
2584	CAP2	1.522720e-01
2585	CAPG	6.291288e-01
2586	CAPN1	9.118633e-01
2587	CAPN10	8.195724e-01
2588	CAPN11	8.787691e-01
2589	CAPN12	8.793157e-01
2590	CAPN13	8.826655e-01
2591	CAPN2	4.047065e-01
2592	CAPN3	3.935870e-01
2593	CAPN5	6.564808e-01
2594	CAPN6	2.865194e-01
2595	CAPN7	5.832917e-01
2596	CAPN9	9.548833e-01
2597	CAPNS1	6.659283e-01
2598	CAPNS2	6.135480e-01
2599	CAPRIN1	3.675017e-01
2600	CAPRIN2	1.317211e-01
2601	CAPS	1
2602	CAPS2	6.759662e-01
2603	CAPSL	5.746770e-02
2604	CAPZA1	1.751769e-01
2605	CAPZA2	9.678993e-02
2606	CAPZA3	1.149703e-01
2607	CAPZB	6.308602e-01
2608	CARD10	9.837997e-01
2609	CARD11	1.300002e-01
2610	CARD14	9.974763e-01
2611	CARD16	3.325022e-01
2612	CARD17	3.622238e-01
2613	CARD18	9.314380e-02
2614	CARD6	1.600016e-01
Done

Running MutSig 2:
Scatter job 29: processing genes 2525 - 2614
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CADPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.360009e-01	ci left: 7.146123e-02	ci right 8.198693e-02	k: 766	n:10000
Cons ci ratio: 8.417885e-02	ci left: 1.706458e-01	ci right 1.857422e-01	k: 1781	n:10000
KS ci ratio: 1.229981e-01	ci left: 8.650182e-02	ci right 9.793702e-02	k: 921	n:10000
CADPS   10000 perm   3 sec   (3852 perm/sec)   p_kst 9.210000e-02   p_cons 1.781000e-01   p_joint 7.660000e-02

Joint ci ratio: 8.803028e-02	ci left: 8.621560e-02	ci right 9.420400e-02	k: 1803	n:20000
Cons ci ratio: 5.728680e-02	ci left: 1.842373e-01	ci right 1.951530e-01	k: 3793	n:20000
KS ci ratio: 8.570058e-02	ci left: 9.062716e-02	ci right 9.879111e-02	k: 1893	n:20000
CADPS   20000 perm   12 sec   (1660 perm/sec)   p_kst 9.465000e-02   p_cons 1.896500e-01   p_joint 9.015000e-02

Outputting figure to mutsig2_images.part000000000029/CADPS.18_4255_20000_0.09465_0.18965_0.09015.png
                gene_name: CADPS
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.094 

Current progress: 2 percent done.
CAPRIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.594957e-02	ci left: 8.510045e-01	ci right 8.647863e-01	k: 8580	n:10000
Cons ci ratio: 2.754627e-02	ci left: 6.600814e-01	ci right 6.786198e-01	k: 6694	n:10000
KS ci ratio: 2.100668e-02	ci left: 7.686102e-01	ci right 7.850283e-01	k: 7769	n:10000
CAPRIN2   10000 perm   2 sec   (4622 perm/sec)   p_kst 7.769000e-01   p_cons 6.694000e-01   p_joint 8.580000e-01

Outputting figure to mutsig2_images.part000000000029/CAPRIN2.12_3456_10000_0.7769_0.6694_0.858.png
                gene_name: CAPRIN2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 4 percent done.
CAD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.471742e-02	ci left: 7.065452e-01	ci right 7.243291e-01	k: 7155	n:10000
Cons ci ratio: 4.293816e-02	ci left: 4.447053e-01	ci right 4.643212e-01	k: 4545	n:10000
KS ci ratio: 3.126171e-02	ci left: 6.015643e-01	ci right 6.207708e-01	k: 6112	n:10000
CAD   10000 perm   3 sec   (3858 perm/sec)   p_kst 6.112000e-01   p_cons 4.545000e-01   p_joint 7.155000e-01

Outputting figure to mutsig2_images.part000000000029/CAD.11_6854_10000_0.6112_0.4545_0.7155.png
                gene_name: CAD
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 6 percent done.
CALD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.484857e-02	ci left: 5.487016e-01	ci right 5.682643e-01	k: 5585	n:10000
Cons ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
KS ci ratio: 1.242219e-02	ci left: 9.029877e-01	ci right 9.143730e-01	k: 9088	n:10000
CALD1   10000 perm   2 sec   (5289 perm/sec)   p_kst 9.088000e-01   p_cons 1.890000e-01   p_joint 5.585000e-01

Outputting figure to mutsig2_images.part000000000029/CALD1.9_2491_10000_0.9088_0.189_0.5585.png
                gene_name: CALD1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 8 percent done.
CAMSAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.123146e-02	ci left: 2.817130e-01	ci right 2.996091e-01	k: 2906	n:10000
Cons ci ratio: 1.387591e-02	ci left: 8.823723e-01	ci right 8.948003e-01	k: 8887	n:10000
KS ci ratio: 9.514713e-02	ci left: 1.381531e-01	ci right 1.520544e-01	k: 1450	n:10000
CAMSAP1   10000 perm   3 sec   (3949 perm/sec)   p_kst 1.450000e-01   p_cons 8.887000e-01   p_joint 2.906000e-01

Outputting figure to mutsig2_images.part000000000029/CAMSAP1.9_4877_10000_0.145_0.8887_0.2906.png
                gene_name: CAMSAP1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 9 percent done.
CAND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.210554e-01	ci left: 8.912712e-02	ci right 1.007101e-01	k: 948	n:10000
Cons ci ratio: 4.841319e-02	ci left: 3.862964e-01	ci right 4.055643e-01	k: 3959	n:10000
KS ci ratio: 1.444354e-01	ci left: 6.362530e-02	ci right 7.362777e-02	k: 685	n:10000
CAND1   10000 perm   2 sec   (4537 perm/sec)   p_kst 6.850000e-02   p_cons 3.959000e-01   p_joint 9.480000e-02

Joint ci ratio: 8.118383e-02	ci left: 1.001458e-01	ci right 1.086696e-01	k: 2087	n:20000
Cons ci ratio: 3.411525e-02	ci left: 3.908077e-01	ci right 4.044221e-01	k: 7952	n:20000
KS ci ratio: 1.020137e-01	ci left: 6.523233e-02	ci right 7.229367e-02	k: 1374	n:20000
CAND1   20000 perm   5 sec   (4123 perm/sec)   p_kst 6.870000e-02   p_cons 3.976000e-01   p_joint 1.043500e-01

Joint ci ratio: 6.639330e-02	ci left: 1.006332e-01	ci right 1.075770e-01	k: 3122	n:30000
Cons ci ratio: 2.762082e-02	ci left: 3.961123e-01	ci right 4.072401e-01	k: 12050	n:30000
KS ci ratio: 8.365433e-02	ci left: 6.533996e-02	ci right 7.107733e-02	k: 2045	n:30000
CAND1   30000 perm   8 sec   (3940 perm/sec)   p_kst 6.816667e-02   p_cons 4.016667e-01   p_joint 1.040667e-01

Outputting figure to mutsig2_images.part000000000029/CAND1.9_3753_30000_0.068167_0.40167_0.10407.png
                gene_name: CAND1
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 11 percent done.
CARD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.383594e-01	ci left: 6.913757e-02	ci right 7.951204e-02	k: 742	n:10000
Cons ci ratio: 3.355961e-02	ci left: 5.672458e-01	ci right 5.867093e-01	k: 5770	n:10000
KS ci ratio: 2.928552e-01	ci left: 1.502126e-02	ci right 2.026513e-02	k: 175	n:10000
CARD11   10000 perm   2 sec   (4961 perm/sec)   p_kst 1.750000e-02   p_cons 5.770000e-01   p_joint 7.420000e-02

Joint ci ratio: 1.077194e-01	ci left: 5.874541e-02	ci right 6.548259e-02	k: 1241	n:20000
Cons ci ratio: 2.314118e-02	ci left: 5.823942e-01	ci right 5.960798e-01	k: 11785	n:20000
KS ci ratio: 2.035806e-01	ci left: 1.634521e-02	ci right 2.009673e-02	k: 363	n:20000
CARD11   20000 perm   5 sec   (4376 perm/sec)   p_kst 1.815000e-02   p_cons 5.892500e-01   p_joint 6.205000e-02

Joint ci ratio: 9.219593e-02	ci left: 5.420718e-02	ci right 5.947905e-02	k: 1704	n:30000
Cons ci ratio: 1.887099e-02	ci left: 5.842757e-01	ci right 5.954402e-01	k: 17696	n:30000
KS ci ratio: 1.623308e-01	ci left: 1.751715e-02	ci right 2.064363e-02	k: 571	n:30000
CARD11   30000 perm   7 sec   (4113 perm/sec)   p_kst 1.903333e-02   p_cons 5.898667e-01   p_joint 5.680000e-02

Joint ci ratio: 9.235189e-02	ci left: 4.110612e-02	ci right 4.511056e-02	k: 1723	n:40000
Cons ci ratio: 1.632322e-02	ci left: 5.856120e-01	ci right 5.952749e-01	k: 23618	n:40000
KS ci ratio: 1.384395e-01	ci left: 1.828815e-02	ci right 2.103221e-02	k: 785	n:40000
CARD11   40000 perm   10 sec   (3896 perm/sec)   p_kst 1.962500e-02   p_cons 5.904500e-01   p_joint 4.307500e-02

Joint ci ratio: 8.142468e-02	ci left: 4.249335e-02	ci right 4.611979e-02	k: 2214	n:50000
Cons ci ratio: 1.462387e-02	ci left: 5.853333e-01	ci right 5.939763e-01	k: 29483	n:50000
KS ci ratio: 1.241146e-01	ci left: 1.834473e-02	ci right 2.079150e-02	k: 977	n:50000
CARD11   50000 perm   13 sec   (3865 perm/sec)   p_kst 1.954000e-02   p_cons 5.896600e-01   p_joint 4.428000e-02

Joint ci ratio: 7.335386e-02	ci left: 4.376431e-02	ci right 4.711317e-02	k: 2725	n:60000
Cons ci ratio: 1.329127e-02	ci left: 5.878379e-01	ci right 5.957199e-01	k: 35507	n:60000
KS ci ratio: 1.137266e-01	ci left: 1.831134e-02	ci right 2.053549e-02	k: 1164	n:60000
CARD11   60000 perm   16 sec   (3834 perm/sec)   p_kst 1.940000e-02   p_cons 5.917833e-01   p_joint 4.541667e-02

Joint ci ratio: 6.672691e-02	ci left: 4.541573e-02	ci right 4.856482e-02	k: 3288	n:70000
Cons ci ratio: 1.231039e-02	ci left: 5.879335e-01	ci right 5.952303e-01	k: 41411	n:70000
KS ci ratio: 1.048651e-01	ci left: 1.854415e-02	ci right 2.061023e-02	k: 1369	n:70000
CARD11   70000 perm   19 sec   (3782 perm/sec)   p_kst 1.955714e-02   p_cons 5.915857e-01   p_joint 4.697143e-02

Joint ci ratio: 6.399511e-02	ci left: 4.336450e-02	ci right 4.624363e-02	k: 3583	n:80000
Cons ci ratio: 1.151380e-02	ci left: 5.882344e-01	ci right 5.950589e-01	k: 47332	n:80000
KS ci ratio: 9.902252e-02	ci left: 1.826030e-02	ci right 2.017480e-02	k: 1536	n:80000
CARD11   80000 perm   21 sec   (3735 perm/sec)   p_kst 1.920000e-02   p_cons 5.916500e-01   p_joint 4.478750e-02

Outputting figure to mutsig2_images.part000000000029/CARD11.9_3561_80000_0.0192_0.59165_0.044788.png
                gene_name: CARD11
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 13 percent done.
CADM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.535019e-02	ci left: 2.558748e-01	ci right 2.732625e-01	k: 2645	n:10000
Cons ci ratio: 1.238882e-01	ci left: 8.533549e-02	ci right 9.670407e-02	k: 909	n:10000
KS ci ratio: 4.182965e-02	ci left: 4.576816e-01	ci right 4.773374e-01	k: 4675	n:10000
CADM1   10000 perm   2 sec   (5286 perm/sec)   p_kst 4.675000e-01   p_cons 9.090000e-02   p_joint 2.645000e-01

Joint ci ratio: 4.459766e-02	ci left: 2.723944e-01	ci right 2.848700e-01	k: 5572	n:20000
Cons ci ratio: 8.868017e-02	ci left: 8.503968e-02	ci right 9.298028e-02	k: 1779	n:20000
KS ci ratio: 2.958341e-02	ci left: 4.605153e-01	ci right 4.743941e-01	k: 9349	n:20000
CADM1   20000 perm   4 sec   (4929 perm/sec)   p_kst 4.674500e-01   p_cons 8.895000e-02   p_joint 2.786000e-01

Outputting figure to mutsig2_images.part000000000029/CADM1.8_1369_20000_0.46745_0.08895_0.2786.png
                gene_name: CADM1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 15 percent done.
CADM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.688919e-02	ci left: 4.016326e-01	ci right 4.210191e-01	k: 4113	n:10000
Cons ci ratio: 2.483278e-02	ci left: 7.046281e-01	ci right 7.224473e-01	k: 7136	n:10000
KS ci ratio: 5.673863e-02	ci left: 3.138374e-01	ci right 3.322658e-01	k: 3230	n:10000
CADM2   10000 perm   2 sec   (5014 perm/sec)   p_kst 3.230000e-01   p_cons 7.136000e-01   p_joint 4.113000e-01

Outputting figure to mutsig2_images.part000000000029/CADM2.8_1419_10000_0.323_0.7136_0.4113.png
                gene_name: CADM2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 17 percent done.
CADM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.990594e-02	ci left: 4.811556e-01	ci right 5.008497e-01	k: 4910	n:10000
Cons ci ratio: 5.390563e-02	ci left: 3.364739e-01	ci right 3.552160e-01	k: 3458	n:10000
KS ci ratio: 4.064743e-02	ci left: 4.719632e-01	ci right 4.916474e-01	k: 4818	n:10000
CADM3   10000 perm   2 sec   (5773 perm/sec)   p_kst 4.818000e-01   p_cons 3.458000e-01   p_joint 4.910000e-01

Outputting figure to mutsig2_images.part000000000029/CADM3.8_1339_10000_0.4818_0.3458_0.491.png
                gene_name: CADM3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 19 percent done.
CADPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.038068e-02	ci left: 6.151246e-01	ci right 6.342027e-01	k: 6247	n:10000
Cons ci ratio: 5.803467e-02	ci left: 3.041153e-01	ci right 3.223936e-01	k: 3132	n:10000
KS ci ratio: 3.169081e-02	ci left: 5.950381e-01	ci right 6.143009e-01	k: 6047	n:10000
CADPS2   10000 perm   2 sec   (4902 perm/sec)   p_kst 6.047000e-01   p_cons 3.132000e-01   p_joint 6.247000e-01

Outputting figure to mutsig2_images.part000000000029/CADPS2.7_4055_10000_0.6047_0.3132_0.6247.png
                gene_name: CADPS2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 21 percent done.
CAMTA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.973867e-02	ci left: 4.832543e-01	ci right 5.029497e-01	k: 4931	n:10000
Cons ci ratio: 9.155892e-02	ci left: 1.477618e-01	ci right 1.620398e-01	k: 1548	n:10000
KS ci ratio: 3.221694e-02	ci left: 5.871085e-01	ci right 6.064351e-01	k: 5968	n:10000
CAMTA1   10000 perm   2 sec   (4569 perm/sec)   p_kst 5.968000e-01   p_cons 1.548000e-01   p_joint 4.931000e-01

Outputting figure to mutsig2_images.part000000000029/CAMTA1.7_5114_10000_0.5968_0.1548_0.4931.png
                gene_name: CAMTA1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 23 percent done.
CACNG7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.058238e-01	ci left: 3.138896e-02	ci right 3.868516e-02	k: 349	n:10000
Cons ci ratio: 8.544729e-01	ci left: 1.222067e-03	ci right 3.087156e-03	k: 20	n:10000
KS ci ratio: 4.272236e-02	ci left: 4.472002e-01	ci right 4.668248e-01	k: 4570	n:10000
CACNG7   10000 perm   2 sec   (6115 perm/sec)   p_kst 4.570000e-01   p_cons 2.000000e-03   p_joint 3.490000e-02

Joint ci ratio: 2.227351e-01	ci left: 1.355014e-02	ci right 1.699289e-02	k: 304	n:20000
Cons ci ratio: 5.536645e-01	ci left: 1.813056e-03	ci right 3.237752e-03	k: 49	n:20000
KS ci ratio: 3.008126e-02	ci left: 4.522250e-01	ci right 4.660869e-01	k: 9183	n:20000
CACNG7   20000 perm   4 sec   (5405 perm/sec)   p_kst 4.591500e-01   p_cons 2.450000e-03   p_joint 1.520000e-02

Joint ci ratio: 1.633527e-01	ci left: 1.729317e-02	ci right 2.040101e-02	k: 564	n:30000
Cons ci ratio: 4.172532e-01	ci left: 2.323413e-03	ci right 3.575928e-03	k: 87	n:30000
KS ci ratio: 2.451829e-02	ci left: 4.543809e-01	ci right 4.656935e-01	k: 13801	n:30000
CACNG7   30000 perm   6 sec   (5145 perm/sec)   p_kst 4.600333e-01   p_cons 2.900000e-03   p_joint 1.880000e-02

Joint ci ratio: 1.353119e-01	ci left: 1.915790e-02	ci right 2.196231e-02	k: 821	n:40000
Cons ci ratio: 3.529063e-01	ci left: 2.533465e-03	ci right 3.640626e-03	k: 122	n:40000
KS ci ratio: 2.115096e-02	ci left: 4.570797e-01	ci right 4.668758e-01	k: 18479	n:40000
CACNG7   40000 perm   8 sec   (4980 perm/sec)   p_kst 4.619750e-01   p_cons 3.050000e-03   p_joint 2.052500e-02

Joint ci ratio: 1.072975e-01	ci left: 2.460324e-02	ci right 2.741216e-02	k: 1299	n:50000
Cons ci ratio: 3.407381e-01	ci left: 2.191025e-03	ci right 3.108239e-03	k: 131	n:50000
KS ci ratio: 1.891872e-02	ci left: 4.575824e-01	ci right 4.663420e-01	k: 23098	n:50000
CACNG7   50000 perm   10 sec   (4838 perm/sec)   p_kst 4.619600e-01   p_cons 2.620000e-03   p_joint 2.598000e-02

Joint ci ratio: 1.275407e-01	ci left: 1.451058e-02	ci right 1.650335e-02	k: 929	n:60000
Cons ci ratio: 3.154743e-01	ci left: 2.162355e-03	ci right 2.986936e-03	k: 153	n:60000
KS ci ratio: 1.742678e-02	ci left: 4.534909e-01	ci right 4.614799e-01	k: 27449	n:60000
CACNG7   60000 perm   13 sec   (4740 perm/sec)   p_kst 4.574833e-01   p_cons 2.550000e-03   p_joint 1.548333e-02

Joint ci ratio: 1.250530e-01	ci left: 1.297653e-02	ci right 1.472125e-02	k: 968	n:70000
Cons ci ratio: 2.926176e-01	ci left: 2.183384e-03	ci right 2.944500e-03	k: 178	n:70000
KS ci ratio: 1.557927e-02	ci left: 4.711946e-01	ci right 4.786074e-01	k: 33243	n:70000
CACNG7   70000 perm   15 sec   (4658 perm/sec)   p_kst 4.749000e-01   p_cons 2.542857e-03   p_joint 1.382857e-02

Joint ci ratio: 1.211745e-01	ci left: 1.212950e-02	ci right 1.370611e-02	k: 1032	n:80000
Cons ci ratio: 2.782356e-01	ci left: 2.130961e-03	ci right 2.830899e-03	k: 197	n:80000
KS ci ratio: 1.458225e-02	ci left: 4.711219e-01	ci right 4.780549e-01	k: 37967	n:80000
CACNG7   80000 perm   17 sec   (4575 perm/sec)   p_kst 4.745875e-01   p_cons 2.462500e-03   p_joint 1.290000e-02

Joint ci ratio: 1.171979e-01	ci left: 1.155773e-02	ci right 1.300729e-02	k: 1104	n:90000
Cons ci ratio: 2.676454e-01	ci left: 2.059793e-03	ci right 2.706283e-03	k: 213	n:90000
KS ci ratio: 1.375623e-02	ci left: 4.710330e-01	ci right 4.775686e-01	k: 42687	n:90000
CACNG7   90000 perm   20 sec   (4493 perm/sec)   p_kst 4.743000e-01   p_cons 2.366667e-03   p_joint 1.226667e-02

Joint ci ratio: 1.043707e-01	ci left: 1.318349e-02	ci right 1.464490e-02	k: 1390	n:100000
Cons ci ratio: 2.548677e-01	ci left: 2.059413e-03	ci right 2.670024e-03	k: 235	n:100000
KS ci ratio: 1.302027e-02	ci left: 4.723505e-01	ci right 4.785509e-01	k: 47545	n:100000
CACNG7   100000 perm   23 sec   (4416 perm/sec)   p_kst 4.754500e-01   p_cons 2.350000e-03   p_joint 1.390000e-02

Joint ci ratio: 1.069988e-01	ci left: 1.140914e-02	ci right 1.270769e-02	k: 1325	n:110000
Cons ci ratio: 2.442360e-01	ci left: 2.051167e-03	ci right 2.630117e-03	k: 256	n:110000
KS ci ratio: 1.269744e-02	ci left: 4.612674e-01	ci right 4.671708e-01	k: 51064	n:110000
CACNG7   110000 perm   25 sec   (4338 perm/sec)   p_kst 4.642182e-01   p_cons 2.327273e-03   p_joint 1.204545e-02

Joint ci ratio: 9.901969e-02	ci left: 1.225291e-02	ci right 1.353746e-02	k: 1546	n:120000
Cons ci ratio: 2.303094e-01	ci left: 2.131073e-03	ci right 2.693406e-03	k: 288	n:120000
KS ci ratio: 1.216711e-02	ci left: 4.609752e-01	ci right 4.666266e-01	k: 55656	n:120000
CACNG7   120000 perm   28 sec   (4266 perm/sec)   p_kst 4.638000e-01   p_cons 2.400000e-03   p_joint 1.288333e-02

Joint ci ratio: 9.183068e-02	ci left: 1.318789e-02	ci right 1.446470e-02	k: 1796	n:130000
Cons ci ratio: 2.185219e-01	ci left: 2.199477e-03	ci right 2.746170e-03	k: 320	n:130000
KS ci ratio: 1.167679e-02	ci left: 4.616398e-01	ci right 4.670695e-01	k: 60366	n:130000
CACNG7   130000 perm   31 sec   (4197 perm/sec)   p_kst 4.643538e-01   p_cons 2.461538e-03   p_joint 1.381538e-02

Joint ci ratio: 9.344306e-02	ci left: 1.183385e-02	ci right 1.300076e-02	k: 1737	n:140000
Cons ci ratio: 2.089709e-01	ci left: 2.245197e-03	ci right 2.775743e-03	k: 350	n:140000
KS ci ratio: 1.125746e-02	ci left: 4.614991e-01	ci right 4.667309e-01	k: 64976	n:140000
CACNG7   140000 perm   34 sec   (4132 perm/sec)   p_kst 4.641143e-01   p_cons 2.500000e-03   p_joint 1.240714e-02

Joint ci ratio: 9.137761e-02	ci left: 1.156586e-02	ci right 1.267979e-02	k: 1817	n:150000
Cons ci ratio: 2.052137e-01	ci left: 2.177681e-03	ci right 2.681859e-03	k: 363	n:150000
KS ci ratio: 1.087840e-02	ci left: 4.614670e-01	ci right 4.665211e-01	k: 69599	n:150000
CACNG7   150000 perm   37 sec   (4069 perm/sec)   p_kst 4.639933e-01   p_cons 2.420000e-03   p_joint 1.211333e-02

Joint ci ratio: 8.941895e-02	ci left: 1.133773e-02	ci right 1.240506e-02	k: 1898	n:160000
Cons ci ratio: 2.005878e-01	ci left: 2.142424e-03	ci right 2.625890e-03	k: 380	n:160000
KS ci ratio: 1.054846e-02	ci left: 4.608167e-01	ci right 4.657096e-01	k: 74122	n:160000
CACNG7   160000 perm   40 sec   (4007 perm/sec)   p_kst 4.632625e-01   p_cons 2.375000e-03   p_joint 1.186250e-02

Joint ci ratio: 8.109330e-02	ci left: 1.300867e-02	ci right 1.411389e-02	k: 2304	n:170000
Cons ci ratio: 1.935977e-01	ci left: 2.172983e-03	ci right 2.644243e-03	k: 408	n:170000
KS ci ratio: 1.024546e-02	ci left: 4.603099e-01	ci right 4.650561e-01	k: 78656	n:170000
CACNG7   170000 perm   43 sec   (3943 perm/sec)   p_kst 4.626824e-01   p_cons 2.400000e-03   p_joint 1.355294e-02

Joint ci ratio: 8.277693e-02	ci left: 1.179590e-02	ci right 1.281990e-02	k: 2214	n:180000
Cons ci ratio: 1.868626e-01	ci left: 2.210997e-03	ci right 2.671928e-03	k: 438	n:180000
KS ci ratio: 9.959120e-03	ci left: 4.602611e-01	ci right 4.648734e-01	k: 83262	n:180000
CACNG7   180000 perm   46 sec   (3885 perm/sec)   p_kst 4.625667e-01   p_cons 2.433333e-03   p_joint 1.230000e-02

Joint ci ratio: 7.380094e-02	ci left: 1.409129e-02	ci right 1.517622e-02	k: 2779	n:190000
Cons ci ratio: 1.802079e-01	ci left: 2.260340e-03	ci right 2.712947e-03	k: 471	n:190000
KS ci ratio: 9.697879e-03	ci left: 4.600982e-01	ci right 4.645871e-01	k: 87845	n:190000
CACNG7   190000 perm   50 sec   (3826 perm/sec)   p_kst 4.623421e-01   p_cons 2.478947e-03   p_joint 1.462632e-02

Joint ci ratio: 7.775095e-02	ci left: 1.206179e-02	ci right 1.304241e-02	k: 2509	n:200000
Cons ci ratio: 1.766894e-01	ci left: 2.238078e-03	ci right 2.676542e-03	k: 490	n:200000
KS ci ratio: 9.447996e-03	ci left: 4.603829e-01	ci right 4.647582e-01	k: 92514	n:200000
CACNG7   200000 perm   53 sec   (3770 perm/sec)   p_kst 4.625700e-01   p_cons 2.450000e-03   p_joint 1.254500e-02

Joint ci ratio: 7.552246e-02	ci left: 1.218805e-02	ci right 1.314928e-02	k: 2659	n:210000
Cons ci ratio: 1.726916e-01	ci left: 2.236238e-03	ci right 2.663396e-03	k: 513	n:210000
KS ci ratio: 9.219306e-03	ci left: 4.604894e-01	ci right 4.647592e-01	k: 97151	n:210000
CACNG7   210000 perm   57 sec   (3712 perm/sec)   p_kst 4.626238e-01   p_cons 2.442857e-03   p_joint 1.266190e-02

Joint ci ratio: 6.141446e-02	ci left: 1.762312e-02	ci right 1.874417e-02	k: 3999	n:220000
Cons ci ratio: 1.691114e-01	ci left: 2.230313e-03	ci right 2.646606e-03	k: 535	n:220000
KS ci ratio: 9.006210e-03	ci left: 4.606011e-01	ci right 4.647726e-01	k: 101791	n:220000
CACNG7   220000 perm   60 sec   (3653 perm/sec)   p_kst 4.626864e-01   p_cons 2.431818e-03   p_joint 1.817727e-02

Joint ci ratio: 5.872571e-02	ci left: 1.844594e-02	ci right 1.956622e-02	k: 4370	n:230000
Cons ci ratio: 1.657451e-01	ci left: 2.224986e-03	ci right 2.631194e-03	k: 557	n:230000
KS ci ratio: 8.807546e-03	ci left: 4.606867e-01	ci right 4.647664e-01	k: 106427	n:230000
CACNG7   230000 perm   64 sec   (3604 perm/sec)   p_kst 4.627261e-01   p_cons 2.421739e-03   p_joint 1.900000e-02

Joint ci ratio: 6.263456e-02	ci left: 1.555510e-02	ci right 1.656497e-02	k: 3853	n:240000
Cons ci ratio: 1.632790e-01	ci left: 2.200193e-03	ci right 2.595311e-03	k: 574	n:240000
KS ci ratio: 8.619163e-03	ci left: 4.608993e-01	ci right 4.648932e-01	k: 111095	n:240000
CACNG7   240000 perm   68 sec   (3555 perm/sec)   p_kst 4.628958e-01   p_cons 2.391667e-03   p_joint 1.605417e-02

Joint ci ratio: 6.189280e-02	ci left: 1.530298e-02	ci right 1.628429e-02	k: 3947	n:250000
Cons ci ratio: 1.598409e-01	ci left: 2.208143e-03	ci right 2.595537e-03	k: 599	n:250000
KS ci ratio: 8.449165e-03	ci left: 4.606960e-01	ci right 4.646089e-01	k: 115663	n:250000
CACNG7   250000 perm   71 sec   (3505 perm/sec)   p_kst 4.626520e-01   p_cons 2.396000e-03   p_joint 1.578800e-02

Joint ci ratio: 6.065277e-02	ci left: 1.533173e-02	ci right 1.629449e-02	k: 4110	n:260000
Cons ci ratio: 1.551254e-01	ci left: 2.259920e-03	ci right 2.643613e-03	k: 636	n:260000
KS ci ratio: 8.281407e-03	ci left: 4.609550e-01	ci right 4.647920e-01	k: 120347	n:260000
CACNG7   260000 perm   75 sec   (3455 perm/sec)   p_kst 4.628731e-01   p_cons 2.446154e-03   p_joint 1.580769e-02

Joint ci ratio: 6.114836e-02	ci left: 1.453393e-02	ci right 1.545431e-02	k: 4047	n:270000
Cons ci ratio: 1.526309e-01	ci left: 2.251001e-03	ci right 2.626473e-03	k: 657	n:270000
KS ci ratio: 8.126223e-03	ci left: 4.610141e-01	ci right 4.647793e-01	k: 124982	n:270000
CACNG7   270000 perm   79 sec   (3412 perm/sec)   p_kst 4.628963e-01   p_cons 2.433333e-03   p_joint 1.498889e-02

Joint ci ratio: 7.867061e-02	ci left: 8.443366e-03	ci right 9.138287e-03	k: 2460	n:280000
Cons ci ratio: 1.767516e-01	ci left: 1.598579e-03	ci right 1.911878e-03	k: 490	n:280000
KS ci ratio: 7.978360e-03	ci left: 4.611374e-01	ci right 4.648348e-01	k: 129636	n:280000
CACNG7   280000 perm   84 sec   (3353 perm/sec)   p_kst 4.629857e-01   p_cons 1.750000e-03   p_joint 8.785714e-03

Joint ci ratio: 7.269390e-02	ci left: 9.566548e-03	ci right 1.029157e-02	k: 2878	n:290000
Cons ci ratio: 1.742855e-01	ci left: 1.589610e-03	ci right 1.896346e-03	k: 504	n:290000
KS ci ratio: 7.838013e-03	ci left: 4.612700e-01	ci right 4.649031e-01	k: 134295	n:290000
CACNG7   290000 perm   88 sec   (3311 perm/sec)   p_kst 4.630862e-01   p_cons 1.737931e-03   p_joint 9.924138e-03

Joint ci ratio: 7.572517e-02	ci left: 8.517942e-03	ci right 9.191597e-03	k: 2655	n:300000
Cons ci ratio: 1.714241e-01	ci left: 1.590839e-03	ci right 1.892251e-03	k: 521	n:300000
KS ci ratio: 7.708178e-03	ci left: 4.611778e-01	ci right 4.647496e-01	k: 138889	n:300000
CACNG7   300000 perm   92 sec   (3273 perm/sec)   p_kst 4.629633e-01   p_cons 1.736667e-03   p_joint 8.850000e-03

Joint ci ratio: 8.235871e-02	ci left: 6.955935e-03	ci right 7.556558e-03	k: 2248	n:310000
Cons ci ratio: 1.685427e-01	ci left: 1.595116e-03	ci right 1.891742e-03	k: 539	n:310000
KS ci ratio: 7.579128e-03	ci left: 4.614499e-01	ci right 4.649637e-01	k: 143594	n:310000
CACNG7   310000 perm   96 sec   (3234 perm/sec)   p_kst 4.632065e-01   p_cons 1.738710e-03   p_joint 7.251613e-03

Joint ci ratio: 8.182033e-02	ci left: 6.830369e-03	ci right 7.416110e-03	k: 2278	n:320000
Cons ci ratio: 1.647697e-01	ci left: 1.620137e-03	ci right 1.914004e-03	k: 564	n:320000
KS ci ratio: 7.462301e-03	ci left: 4.613086e-01	ci right 4.647670e-01	k: 148172	n:320000
CACNG7   320000 perm   100 sec   (3196 perm/sec)   p_kst 4.630375e-01   p_cons 1.762500e-03   p_joint 7.118750e-03

Joint ci ratio: 8.204701e-02	ci left: 6.587736e-03	ci right 7.154309e-03	k: 2266	n:330000
Cons ci ratio: 1.622061e-01	ci left: 1.623356e-03	ci right 1.912778e-03	k: 582	n:330000
KS ci ratio: 7.348876e-03	ci left: 4.613006e-01	ci right 4.647061e-01	k: 152791	n:330000
CACNG7   330000 perm   104 sec   (3159 perm/sec)   p_kst 4.630030e-01   p_cons 1.763636e-03   p_joint 6.866667e-03

Joint ci ratio: 7.899122e-02	ci left: 6.907014e-03	ci right 7.477905e-03	k: 2444	n:340000
Cons ci ratio: 1.584434e-01	ci left: 1.654662e-03	ci right 1.942172e-03	k: 610	n:340000
KS ci ratio: 7.242699e-03	ci left: 4.611405e-01	ci right 4.644954e-01	k: 157358	n:340000
CACNG7   340000 perm   109 sec   (3123 perm/sec)   p_kst 4.628176e-01   p_cons 1.794118e-03   p_joint 7.188235e-03

Joint ci ratio: 8.177328e-02	ci left: 6.256028e-03	ci right 6.792191e-03	k: 2282	n:350000
Cons ci ratio: 1.567854e-01	ci left: 1.643063e-03	ci right 1.925289e-03	k: 623	n:350000
KS ci ratio: 7.139885e-03	ci left: 4.610670e-01	ci right 4.643736e-01	k: 161952	n:350000
CACNG7   350000 perm   113 sec   (3086 perm/sec)   p_kst 4.627200e-01   p_cons 1.780000e-03   p_joint 6.520000e-03

Joint ci ratio: 8.068540e-02	ci left: 6.250973e-03	ci right 6.779240e-03	k: 2344	n:360000
Cons ci ratio: 1.549349e-01	ci left: 1.637463e-03	ci right 1.915099e-03	k: 638	n:360000
KS ci ratio: 7.041210e-03	ci left: 4.610063e-01	ci right 4.642665e-01	k: 166549	n:360000
CACNG7   360000 perm   118 sec   (3043 perm/sec)   p_kst 4.626361e-01   p_cons 1.772222e-03   p_joint 6.511111e-03

Joint ci ratio: 7.772867e-02	ci left: 6.561570e-03	ci right 7.094847e-03	k: 2525	n:370000
Cons ci ratio: 1.530312e-01	ci left: 1.634784e-03	ci right 1.908248e-03	k: 654	n:370000
KS ci ratio: 6.944629e-03	ci left: 4.610842e-01	ci right 4.643001e-01	k: 171196	n:370000
CACNG7   370000 perm   123 sec   (3009 perm/sec)   p_kst 4.626919e-01   p_cons 1.767568e-03   p_joint 6.824324e-03

Joint ci ratio: 7.668825e-02	ci left: 6.566971e-03	ci right 7.093223e-03	k: 2594	n:380000
Cons ci ratio: 1.510833e-01	ci left: 1.634798e-03	ci right 1.904469e-03	k: 671	n:380000
KS ci ratio: 6.856087e-03	ci left: 4.608558e-01	ci right 4.640290e-01	k: 175728	n:380000
CACNG7   380000 perm   128 sec   (2976 perm/sec)   p_kst 4.624421e-01   p_cons 1.765789e-03   p_joint 6.826316e-03

Joint ci ratio: 4.085244e-02	ci left: 2.259272e-02	ci right 2.353746e-02	k: 8994	n:390000
Cons ci ratio: 1.110086e-01	ci left: 3.010205e-03	ci right 3.366470e-03	k: 1242	n:390000
KS ci ratio: 6.767912e-03	ci left: 4.608547e-01	ci right 4.639869e-01	k: 180344	n:390000
CACNG7   390000 perm   132 sec   (2944 perm/sec)   p_kst 4.624205e-01   p_cons 3.184615e-03   p_joint 2.306154e-02

Joint ci ratio: 4.164066e-02	ci left: 2.122347e-02	ci right 2.212848e-02	k: 8669	n:400000
Cons ci ratio: 1.098664e-01	ci left: 2.998153e-03	ci right 3.349105e-03	k: 1268	n:400000
KS ci ratio: 6.681038e-03	ci left: 4.610039e-01	ci right 4.640967e-01	k: 185020	n:400000
CACNG7   400000 perm   138 sec   (2908 perm/sec)   p_kst 4.625500e-01   p_cons 3.170000e-03   p_joint 2.167250e-02

Joint ci ratio: 4.109368e-02	ci left: 2.126583e-02	ci right 2.216046e-02	k: 8901	n:410000
Cons ci ratio: 1.083815e-01	ci left: 3.008064e-03	ci right 3.355113e-03	k: 1303	n:410000
KS ci ratio: 6.598235e-03	ci left: 4.610851e-01	ci right 4.641399e-01	k: 189671	n:410000
CACNG7   410000 perm   143 sec   (2876 perm/sec)   p_kst 4.626122e-01   p_cons 3.178049e-03   p_joint 2.170976e-02

Joint ci ratio: 4.076662e-02	ci left: 2.110117e-02	ci right 2.198164e-02	k: 9046	n:420000
Cons ci ratio: 1.070354e-01	ci left: 3.012899e-03	ci right 3.355916e-03	k: 1336	n:420000
KS ci ratio: 6.518185e-03	ci left: 4.611816e-01	ci right 4.641998e-01	k: 194330	n:420000
CACNG7   420000 perm   148 sec   (2840 perm/sec)   p_kst 4.626905e-01   p_cons 3.180952e-03   p_joint 2.153810e-02

Joint ci ratio: 4.026849e-02	ci left: 2.112841e-02	ci right 2.199899e-02	k: 9271	n:430000
Cons ci ratio: 1.056610e-01	ci left: 3.022063e-03	ci right 3.361431e-03	k: 1371	n:430000
KS ci ratio: 6.441824e-03	ci left: 4.612088e-01	ci right 4.641917e-01	k: 198961	n:430000
CACNG7   430000 perm   153 sec   (2810 perm/sec)   p_kst 4.627000e-01   p_cons 3.188372e-03   p_joint 2.156047e-02

Joint ci ratio: 3.977535e-02	ci left: 2.116797e-02	ci right 2.202925e-02	k: 9502	n:440000
Cons ci ratio: 1.046370e-01	ci left: 3.013128e-03	ci right 3.348012e-03	k: 1398	n:440000
KS ci ratio: 6.368725e-03	ci left: 4.611850e-01	ci right 4.641337e-01	k: 203570	n:440000
CACNG7   440000 perm   158 sec   (2781 perm/sec)   p_kst 4.626591e-01   p_cons 3.177273e-03   p_joint 2.159545e-02

Joint ci ratio: 3.947223e-02	ci left: 2.102317e-02	ci right 2.187189e-02	k: 9650	n:450000
Cons ci ratio: 1.037883e-01	ci left: 2.995948e-03	ci right 3.326056e-03	k: 1421	n:450000
KS ci ratio: 6.298763e-03	ci left: 4.611068e-01	ci right 4.640226e-01	k: 208154	n:450000
CACNG7   450000 perm   164 sec   (2751 perm/sec)   p_kst 4.625644e-01   p_cons 3.157778e-03   p_joint 2.144444e-02

Joint ci ratio: 4.042218e-02	ci left: 1.962965e-02	ci right 2.044163e-02	k: 9215	n:460000
Cons ci ratio: 1.028173e-01	ci left: 2.987997e-03	ci right 3.313963e-03	k: 1448	n:460000
KS ci ratio: 6.230512e-03	ci left: 4.610757e-01	ci right 4.639595e-01	k: 212758	n:460000
CACNG7   460000 perm   169 sec   (2723 perm/sec)   p_kst 4.625174e-01   p_cons 3.147826e-03   p_joint 2.003261e-02

Joint ci ratio: 3.849067e-02	ci left: 2.117574e-02	ci right 2.200890e-02	k: 10147	n:470000
Cons ci ratio: 1.013236e-01	ci left: 3.013578e-03	ci right 3.337275e-03	k: 1491	n:470000
KS ci ratio: 6.164222e-03	ci left: 4.610631e-01	ci right 4.639161e-01	k: 217370	n:470000
CACNG7   470000 perm   175 sec   (2684 perm/sec)   p_kst 4.624894e-01   p_cons 3.172340e-03   p_joint 2.158936e-02

Joint ci ratio: 3.818738e-02	ci left: 2.107089e-02	ci right 2.189324e-02	k: 10310	n:480000
Cons ci ratio: 1.001883e-01	ci left: 3.019844e-03	ci right 3.340366e-03	k: 1525	n:480000
KS ci ratio: 6.099058e-03	ci left: 4.611283e-01	ci right 4.639514e-01	k: 222019	n:480000
CACNG7   480000 perm   181 sec   (2657 perm/sec)   p_kst 4.625396e-01   p_cons 3.177083e-03   p_joint 2.147917e-02

Joint ci ratio: 3.796898e-02	ci left: 2.088542e-02	ci right 2.169577e-02	k: 10431	n:490000
Cons ci ratio: 9.915403e-02	ci left: 3.021893e-03	ci right 3.339129e-03	k: 1557	n:490000
KS ci ratio: 6.036537e-03	ci left: 4.611399e-01	ci right 4.639340e-01	k: 226643	n:490000
CACNG7   490000 perm   186 sec   (2633 perm/sec)   p_kst 4.625367e-01   p_cons 3.177551e-03   p_joint 2.128776e-02

Outputting figure to mutsig2_images.part000000000029/CACNG7.6_848_490000_0.46254_0.0031776_0.021288.png
                gene_name: CACNG7
               theta_stop: 0.099 
                    nperm: 490000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.0032 
      ci_cons_bounds_left: 0.0030 
     ci_cons_bounds_right: 0.0033 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.022 

Current progress: 25 percent done.
CALCRL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.339117e-02	ci left: 4.395167e-01	ci right 4.591129e-01	k: 4493	n:10000
KS ci ratio: 8.347477e-03	ci left: 9.525257e-01	ci right 9.606056e-01	k: 9567	n:10000
CALCRL   10000 perm   2 sec   (6204 perm/sec)   p_kst 9.567000e-01   p_cons 4.493000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CALCRL.6_1434_10000_0.9567_0.4493_1.png
                gene_name: CALCRL
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
CAND2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.548400e-02	ci left: 6.938352e-01	ci right 7.118465e-01	k: 7029	n:10000
KS ci ratio: 2.380295e-02	ci left: 7.217883e-01	ci right 7.392772e-01	k: 7306	n:10000
CAND2   10000 perm   2 sec   (5161 perm/sec)   p_kst 7.306000e-01   p_cons 7.029000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CAND2.6_3771_10000_0.7306_0.7029_1.png
                gene_name: CAND2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
CAPN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.298170e-02	ci left: 7.355281e-01	ci right 7.527294e-01	k: 7442	n:10000
Cons ci ratio: 3.591382e-02	ci left: 5.337760e-01	ci right 5.533986e-01	k: 5436	n:10000
KS ci ratio: 3.742366e-02	ci left: 5.132551e-01	ci right 5.329314e-01	k: 5231	n:10000
CAPN2   10000 perm   2 sec   (5487 perm/sec)   p_kst 5.231000e-01   p_cons 5.436000e-01   p_joint 7.442000e-01

Outputting figure to mutsig2_images.part000000000029/CAPN2.6_2194_10000_0.5231_0.5436_0.7442.png
                gene_name: CAPN2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 30 percent done.
CAPN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.899088e-02	ci left: 4.927508e-01	ci right 5.124477e-01	k: 5026	n:10000
Cons ci ratio: 2.181702e-02	ci left: 7.550454e-01	ci right 7.718009e-01	k: 7635	n:10000
KS ci ratio: 6.138026e-02	ci left: 2.807224e-01	ci right 2.986003e-01	k: 2896	n:10000
CAPN3   10000 perm   2 sec   (5962 perm/sec)   p_kst 2.896000e-01   p_cons 7.635000e-01   p_joint 5.026000e-01

Outputting figure to mutsig2_images.part000000000029/CAPN3.6_2614_10000_0.2896_0.7635_0.5026.png
                gene_name: CAPN3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 32 percent done.
CARD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.356182e-01	ci left: 7.184865e-02	ci right 8.239926e-02	k: 770	n:10000
Cons ci ratio: 1.876749e-01	ci left: 3.786599e-02	ci right 4.580373e-02	k: 417	n:10000
KS ci ratio: 1.085809e-01	ci left: 1.090053e-01	ci right 1.216198e-01	k: 1152	n:10000
CARD6   10000 perm   2 sec   (4881 perm/sec)   p_kst 1.152000e-01   p_cons 4.170000e-02   p_joint 7.700000e-02

Joint ci ratio: 1.245349e-01	ci left: 4.425346e-02	ci right 5.017908e-02	k: 943	n:20000
Cons ci ratio: 1.336294e-01	ci left: 3.848736e-02	ci right 4.404701e-02	k: 824	n:20000
KS ci ratio: 7.607298e-02	ci left: 1.127238e-01	ci right 1.216878e-01	k: 2343	n:20000
CARD6   20000 perm   4 sec   (4455 perm/sec)   p_kst 1.171500e-01   p_cons 4.120000e-02   p_joint 4.715000e-02

Joint ci ratio: 7.580802e-02	ci left: 7.872271e-02	ci right 8.495855e-02	k: 2454	n:30000
Cons ci ratio: 1.064235e-01	ci left: 4.095956e-02	ci right 4.559608e-02	k: 1297	n:30000
KS ci ratio: 6.188466e-02	ci left: 1.143041e-01	ci right 1.216367e-01	k: 3538	n:30000
CARD6   30000 perm   7 sec   (4276 perm/sec)   p_kst 1.179333e-01   p_cons 4.323333e-02   p_joint 8.180000e-02

Joint ci ratio: 5.472882e-02	ci left: 1.105553e-01	ci right 1.168009e-01	k: 4546	n:40000
Cons ci ratio: 9.229595e-02	ci left: 4.115501e-02	ci right 4.516165e-02	k: 1725	n:40000
KS ci ratio: 5.352100e-02	ci left: 1.150762e-01	ci right 1.214294e-01	k: 4729	n:40000
CARD6   40000 perm   10 sec   (4158 perm/sec)   p_kst 1.182250e-01   p_cons 4.312500e-02   p_joint 1.136500e-01

Outputting figure to mutsig2_images.part000000000029/CARD6.6_3126_40000_0.11822_0.043125_0.11365.png
                gene_name: CARD6
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 34 percent done.
CALCR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.137882e-02	ci left: 4.630737e-01	ci right 4.827421e-01	k: 4729	n:10000
Cons ci ratio: 1.695711e-02	ci left: 8.351090e-01	ci right 8.494910e-01	k: 8424	n:10000
KS ci ratio: 5.621107e-02	ci left: 3.179062e-01	ci right 3.363946e-01	k: 3271	n:10000
CALCR   10000 perm   2 sec   (5749 perm/sec)   p_kst 3.271000e-01   p_cons 8.424000e-01   p_joint 4.729000e-01

Outputting figure to mutsig2_images.part000000000029/CALCR.5_1583_10000_0.3271_0.8424_0.4729.png
                gene_name: CALCR
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 36 percent done.
CAMK1G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.432331e-02	ci left: 7.131053e-01	ci right 7.307652e-01	k: 7220	n:10000
KS ci ratio: 1.684207e-02	ci left: 8.369418e-01	ci right 8.512571e-01	k: 8442	n:10000
CAMK1G   10000 perm   2 sec   (4988 perm/sec)   p_kst 8.442000e-01   p_cons 7.220000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CAMK1G.5_1475_10000_0.8442_0.722_1.png
                gene_name: CAMK1G
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
CAMTA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
Cons ci ratio: 1.417902e-01	ci left: 6.594512e-02	ci right 7.610649e-02	k: 709	n:10000
KS ci ratio: 1.373633e-01	ci left: 7.010558e-02	ci right 8.054343e-02	k: 752	n:10000
CAMTA2   10000 perm   2 sec   (4841 perm/sec)   p_kst 7.520000e-02   p_cons 7.090000e-02   p_joint 2.810000e-02

Joint ci ratio: 1.002250e-01	ci left: 6.747821e-02	ci right 7.464710e-02	k: 1420	n:20000
Cons ci ratio: 1.035587e-01	ci left: 6.337790e-02	ci right 7.034867e-02	k: 1336	n:20000
KS ci ratio: 9.921401e-02	ci left: 6.879694e-02	ci right 7.602796e-02	k: 1447	n:20000
CAMTA2   20000 perm   5 sec   (4392 perm/sec)   p_kst 7.235000e-02   p_cons 6.680000e-02   p_joint 7.100000e-02

Joint ci ratio: 1.213123e-01	ci left: 3.158952e-02	ci right 3.570144e-02	k: 1008	n:30000
Cons ci ratio: 8.495386e-02	ci left: 6.344464e-02	ci right 6.910638e-02	k: 1987	n:30000
KS ci ratio: 8.045081e-02	ci left: 7.037552e-02	ci right 7.630742e-02	k: 2199	n:30000
CAMTA2   30000 perm   7 sec   (4240 perm/sec)   p_kst 7.330000e-02   p_cons 6.623333e-02   p_joint 3.360000e-02

Joint ci ratio: 1.084570e-01	ci left: 2.990726e-02	ci right 3.336117e-02	k: 1264	n:40000
Cons ci ratio: 7.415338e-02	ci left: 6.287346e-02	ci right 6.773988e-02	k: 2611	n:40000
KS ci ratio: 7.036541e-02	ci left: 6.946091e-02	ci right 7.455144e-02	k: 2879	n:40000
CAMTA2   40000 perm   10 sec   (4145 perm/sec)   p_kst 7.197500e-02   p_cons 6.527500e-02   p_joint 3.160000e-02

Joint ci ratio: 9.287877e-02	ci left: 3.280003e-02	ci right 3.601432e-02	k: 1719	n:50000
Cons ci ratio: 6.630322e-02	ci left: 6.316948e-02	ci right 6.752115e-02	k: 3266	n:50000
KS ci ratio: 6.326891e-02	ci left: 6.903971e-02	ci right 7.357021e-02	k: 3564	n:50000
CAMTA2   50000 perm   12 sec   (4057 perm/sec)   p_kst 7.128000e-02   p_cons 6.532000e-02   p_joint 3.438000e-02

Outputting figure to mutsig2_images.part000000000029/CAMTA2.5_3861_50000_0.07128_0.06532_0.03438.png
                gene_name: CAMTA2
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 40 percent done.
CAPN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.116695e-01	ci left: 1.035416e-01	ci right 1.158868e-01	k: 1096	n:10000
Cons ci ratio: 1.604833e-01	ci left: 5.176584e-02	ci right 6.089478e-02	k: 562	n:10000
KS ci ratio: 3.971484e-02	ci left: 4.835542e-01	ci right 5.032497e-01	k: 4934	n:10000
CAPN5   10000 perm   2 sec   (6239 perm/sec)   p_kst 4.934000e-01   p_cons 5.620000e-02   p_joint 1.096000e-01

Joint ci ratio: 7.416821e-02	ci left: 1.179862e-01	ci right 1.271238e-01	k: 2450	n:20000
Cons ci ratio: 1.146732e-01	ci left: 5.202621e-02	ci right 5.840388e-02	k: 1103	n:20000
KS ci ratio: 2.794470e-02	ci left: 4.889467e-01	ci right 5.028545e-01	k: 9918	n:20000
CAPN5   20000 perm   4 sec   (5550 perm/sec)   p_kst 4.959000e-01   p_cons 5.515000e-02   p_joint 1.225000e-01

Joint ci ratio: 4.694272e-02	ci left: 1.841540e-01	ci right 1.930398e-01	k: 5657	n:30000
Cons ci ratio: 8.876887e-02	ci left: 5.831772e-02	ci right 6.376768e-02	k: 1830	n:30000
KS ci ratio: 2.288436e-02	ci left: 4.887599e-01	ci right 5.001079e-01	k: 14833	n:30000
CAPN5   30000 perm   6 sec   (5282 perm/sec)   p_kst 4.944333e-01   p_cons 6.100000e-02   p_joint 1.885667e-01

Outputting figure to mutsig2_images.part000000000029/CAPN5.5_1971_30000_0.49443_0.061_0.18857.png
                gene_name: CAPN5
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 42 percent done.
CAPRIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.698126e-02	ci left: 1.979127e-01	ci right 2.138590e-01	k: 2058	n:10000
Cons ci ratio: 3.042605e-02	ci left: 6.144213e-01	ci right 6.335064e-01	k: 6240	n:10000
KS ci ratio: 1.177918e-01	ci left: 9.379779e-02	ci right 1.056366e-01	k: 996	n:10000
CAPRIN1   10000 perm   2 sec   (5420 perm/sec)   p_kst 9.960000e-02   p_cons 6.240000e-01   p_joint 2.058000e-01

Joint ci ratio: 6.020370e-02	ci left: 1.696083e-01	ci right 1.801863e-01	k: 3497	n:20000
Cons ci ratio: 2.119805e-02	ci left: 6.242187e-01	ci right 6.376432e-01	k: 12619	n:20000
KS ci ratio: 8.329303e-02	ci left: 9.553217e-02	ci right 1.038846e-01	k: 1993	n:20000
CAPRIN1   20000 perm   4 sec   (4840 perm/sec)   p_kst 9.965000e-02   p_cons 6.309500e-01   p_joint 1.748500e-01

Outputting figure to mutsig2_images.part000000000029/CAPRIN1.5_2222_20000_0.09965_0.63095_0.17485.png
                gene_name: CAPRIN1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.100 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 43 percent done.
CAPSL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.107936e-02	ci left: 7.673949e-01	ci right 7.838442e-01	k: 7757	n:10000
Cons ci ratio: 1.591685e-02	ci left: 8.515144e-01	ci right 8.652761e-01	k: 8585	n:10000
KS ci ratio: 3.501845e-02	ci left: 5.462969e-01	ci right 5.658704e-01	k: 5561	n:10000
CAPSL   10000 perm   2 sec   (5821 perm/sec)   p_kst 5.561000e-01   p_cons 8.585000e-01   p_joint 7.757000e-01

Outputting figure to mutsig2_images.part000000000029/CAPSL.5_643_10000_0.5561_0.8585_0.7757.png
                gene_name: CAPSL
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 45 percent done.
CALCA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.886859e-02	ci left: 2.362004e-01	ci right 2.531486e-01	k: 2446	n:10000
Cons ci ratio: 3.565409e-02	ci left: 5.373814e-01	ci right 5.569911e-01	k: 5472	n:10000
KS ci ratio: 1.028186e-01	ci left: 1.203376e-01	ci right 1.334806e-01	k: 1268	n:10000
CALCA   10000 perm   2 sec   (6084 perm/sec)   p_kst 1.268000e-01   p_cons 5.472000e-01   p_joint 2.446000e-01

Joint ci ratio: 4.701899e-02	ci left: 2.517979e-01	ci right 2.639726e-01	k: 5157	n:20000
Cons ci ratio: 2.511639e-02	ci left: 5.421723e-01	ci right 5.560135e-01	k: 10982	n:20000
KS ci ratio: 7.254146e-02	ci left: 1.227593e-01	ci right 1.320493e-01	k: 2547	n:20000
CALCA   20000 perm   4 sec   (5501 perm/sec)   p_kst 1.273500e-01   p_cons 5.491000e-01   p_joint 2.578500e-01

Outputting figure to mutsig2_images.part000000000029/CALCA.4_602_20000_0.12735_0.5491_0.25785.png
                gene_name: CALCA
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 47 percent done.
CALCOCO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.146189e-02	ci left: 4.620751e-01	ci right 4.817413e-01	k: 4719	n:10000
Cons ci ratio: 3.773984e-02	ci left: 5.090529e-01	ci right 5.287361e-01	k: 5189	n:10000
KS ci ratio: 5.482342e-02	ci left: 3.289257e-01	ci right 3.475686e-01	k: 3382	n:10000
CALCOCO1   10000 perm   2 sec   (5264 perm/sec)   p_kst 3.382000e-01   p_cons 5.189000e-01   p_joint 4.719000e-01

Outputting figure to mutsig2_images.part000000000029/CALCOCO1.4_2132_10000_0.3382_0.5189_0.4719.png
                gene_name: CALCOCO1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 49 percent done.
CAMK1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.135385e-02	ci left: 6.001585e-01	ci right 6.193775e-01	k: 6098	n:10000
Cons ci ratio: 5.945362e-02	ci left: 2.939022e-01	ci right 3.120127e-01	k: 3029	n:10000
KS ci ratio: 3.900648e-02	ci left: 4.925508e-01	ci right 5.122478e-01	k: 5024	n:10000
CAMK1D   10000 perm   2 sec   (5215 perm/sec)   p_kst 5.024000e-01   p_cons 3.029000e-01   p_joint 6.098000e-01

Outputting figure to mutsig2_images.part000000000029/CAMK1D.4_1237_10000_0.5024_0.3029_0.6098.png
                gene_name: CAMK1D
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 51 percent done.
CAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.066371e-02	ci left: 4.717634e-01	ci right 4.914473e-01	k: 4816	n:10000
KS ci ratio: 1.051037e-02	ci left: 9.279223e-01	ci right 9.378237e-01	k: 9330	n:10000
CAP2   10000 perm   2 sec   (5959 perm/sec)   p_kst 9.330000e-01   p_cons 4.816000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CAP2.4_1482_10000_0.933_0.4816_1.png
                gene_name: CAP2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
CAPN7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.132077e-02	ci left: 4.637727e-01	ci right 4.834426e-01	k: 4736	n:10000
Cons ci ratio: 6.577260e-02	ci left: 2.534019e-01	ci right 2.707369e-01	k: 2620	n:10000
KS ci ratio: 3.491928e-02	ci left: 5.476996e-01	ci right 5.672669e-01	k: 5575	n:10000
CAPN7   10000 perm   2 sec   (4763 perm/sec)   p_kst 5.575000e-01   p_cons 2.620000e-01   p_joint 4.736000e-01

Outputting figure to mutsig2_images.part000000000029/CAPN7.4_2526_10000_0.5575_0.262_0.4736.png
                gene_name: CAPN7
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 55 percent done.
CALCOCO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.489128e-01	ci left: 5.995589e-02	ci right 6.969950e-02	k: 647	n:10000
Cons ci ratio: 1.573961e-01	ci left: 5.378678e-02	ci right 6.307254e-02	k: 583	n:10000
KS ci ratio: 1.108764e-01	ci left: 1.049071e-01	ci right 1.173205e-01	k: 1110	n:10000
CALCOCO2   10000 perm   2 sec   (6060 perm/sec)   p_kst 1.110000e-01   p_cons 5.830000e-02   p_joint 6.470000e-02

Joint ci ratio: 1.107954e-01	ci left: 5.562767e-02	ci right 6.220129e-02	k: 1177	n:20000
Cons ci ratio: 1.061783e-01	ci left: 6.040274e-02	ci right 6.722475e-02	k: 1275	n:20000
KS ci ratio: 7.980377e-02	ci left: 1.033377e-01	ci right 1.119767e-01	k: 2152	n:20000
CALCOCO2   20000 perm   4 sec   (5471 perm/sec)   p_kst 1.076000e-01   p_cons 6.375000e-02   p_joint 5.885000e-02

Joint ci ratio: 1.101574e-01	ci left: 3.826480e-02	ci right 4.275808e-02	k: 1214	n:30000
Cons ci ratio: 8.640586e-02	ci left: 6.141936e-02	ci right 6.699874e-02	k: 1925	n:30000
KS ci ratio: 6.500776e-02	ci left: 1.045749e-01	ci right 1.116345e-01	k: 3242	n:30000
CALCOCO2   30000 perm   6 sec   (5241 perm/sec)   p_kst 1.080667e-01   p_cons 6.416667e-02   p_joint 4.046667e-02

Joint ci ratio: 9.841413e-02	ci left: 3.626945e-02	ci right 4.004798e-02	k: 1525	n:40000
Cons ci ratio: 7.552371e-02	ci left: 6.071197e-02	ci right 6.550170e-02	k: 2523	n:40000
KS ci ratio: 5.649651e-02	ci left: 1.043818e-01	ci right 1.104753e-01	k: 4296	n:40000
CALCOCO2   40000 perm   8 sec   (5087 perm/sec)   p_kst 1.074000e-01   p_cons 6.307500e-02   p_joint 3.812500e-02

Outputting figure to mutsig2_images.part000000000029/CALCOCO2.3_1389_40000_0.1074_0.063075_0.038125.png
                gene_name: CALCOCO2
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.040 

Current progress: 57 percent done.
CALN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.670990e-02	ci left: 5.228628e-01	ci right 5.425181e-01	k: 5327	n:10000
Cons ci ratio: 1.087408e-01	ci left: 1.087125e-01	ci right 1.213128e-01	k: 1149	n:10000
KS ci ratio: 1.865273e-02	ci left: 8.076544e-01	ci right 8.229615e-01	k: 8154	n:10000
CALN1   10000 perm   2 sec   (6012 perm/sec)   p_kst 8.154000e-01   p_cons 1.149000e-01   p_joint 5.327000e-01

Joint ci ratio: 6.650775e-03	ci left: 9.423663e-01	ci right 9.487033e-01	k: 18912	n:20000
Cons ci ratio: 7.666701e-02	ci left: 1.111506e-01	ci right 1.200615e-01	k: 2311	n:20000
KS ci ratio: 1.320003e-02	ci left: 8.096996e-01	ci right 8.205086e-01	k: 16303	n:20000
CALN1   20000 perm   4 sec   (5596 perm/sec)   p_kst 8.151500e-01   p_cons 1.155500e-01   p_joint 9.456000e-01

Outputting figure to mutsig2_images.part000000000029/CALN1.3_810_20000_0.81515_0.11555_0.9456.png
                gene_name: CALN1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 58 percent done.
CAMK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.271914e-02	ci left: 2.720070e-01	ci right 2.897208e-01	k: 2808	n:10000
Cons ci ratio: 6.575560e-02	ci left: 2.535008e-01	ci right 2.708379e-01	k: 2621	n:10000
KS ci ratio: 5.760589e-02	ci left: 3.072893e-01	ci right 3.256177e-01	k: 3164	n:10000
CAMK1   10000 perm   2 sec   (6383 perm/sec)   p_kst 3.164000e-01   p_cons 2.621000e-01   p_joint 2.808000e-01

Outputting figure to mutsig2_images.part000000000029/CAMK1.3_1157_10000_0.3164_0.2621_0.2808.png
                gene_name: CAMK1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 60 percent done.
CAMK2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
Cons ci ratio: 5.326853e-02	ci left: 3.418387e-01	ci right 3.606481e-01	k: 3512	n:10000
KS ci ratio: 2.463123e-01	ci left: 2.165304e-02	ci right 2.782806e-02	k: 246	n:10000
CAMK2D   10000 perm   2 sec   (5753 perm/sec)   p_kst 2.460000e-02   p_cons 3.512000e-01   p_joint 5.500000e-02

Joint ci ratio: 1.278387e-01	ci left: 4.202288e-02	ci right 4.781036e-02	k: 897	n:20000
Cons ci ratio: 3.752229e-02	ci left: 3.463735e-01	ci right 3.596693e-01	k: 7060	n:20000
KS ci ratio: 1.794582e-01	ci left: 2.120602e-02	ci right 2.543413e-02	k: 465	n:20000
CAMK2D   20000 perm   4 sec   (5133 perm/sec)   p_kst 2.325000e-02   p_cons 3.530000e-01   p_joint 4.485000e-02

Joint ci ratio: 9.927831e-02	ci left: 4.694235e-02	ci right 5.187871e-02	k: 1481	n:30000
Cons ci ratio: 3.057765e-02	ci left: 3.484867e-01	ci right 3.593416e-01	k: 10617	n:30000
KS ci ratio: 1.464210e-01	ci left: 2.162257e-02	ci right 2.507059e-02	k: 699	n:30000
CAMK2D   30000 perm   7 sec   (4511 perm/sec)   p_kst 2.330000e-02   p_cons 3.539000e-01   p_joint 4.936667e-02

Joint ci ratio: 9.684146e-02	ci left: 3.744124e-02	ci right 4.127600e-02	k: 1573	n:40000
Cons ci ratio: 2.633449e-02	ci left: 3.517544e-01	ci right 3.611664e-01	k: 14258	n:40000
KS ci ratio: 1.267585e-01	ci left: 2.186806e-02	ci right 2.485169e-02	k: 933	n:40000
CAMK2D   40000 perm   10 sec   (3860 perm/sec)   p_kst 2.332500e-02   p_cons 3.564500e-01   p_joint 3.932500e-02

Joint ci ratio: 9.673107e-02	ci left: 3.025969e-02	ci right 3.335498e-02	k: 1589	n:50000
Cons ci ratio: 2.355915e-02	ci left: 3.521606e-01	ci right 3.605761e-01	k: 17818	n:50000
KS ci ratio: 1.128579e-01	ci left: 2.222881e-02	ci right 2.490690e-02	k: 1177	n:50000
CAMK2D   50000 perm   14 sec   (3557 perm/sec)   p_kst 2.354000e-02   p_cons 3.563600e-01   p_joint 3.178000e-02

Joint ci ratio: 9.017505e-02	ci left: 2.915478e-02	ci right 3.192420e-02	k: 1831	n:60000
Cons ci ratio: 2.140356e-02	ci left: 3.547279e-01	ci right 3.624191e-01	k: 21514	n:60000
KS ci ratio: 1.035361e-01	ci left: 2.212394e-02	ci right 2.455580e-02	k: 1399	n:60000
CAMK2D   60000 perm   17 sec   (3616 perm/sec)   p_kst 2.331667e-02   p_cons 3.585667e-01   p_joint 3.051667e-02

Joint ci ratio: 7.048589e-02	ci left: 4.082083e-02	ci right 4.381725e-02	k: 2961	n:70000
Cons ci ratio: 1.980467e-02	ci left: 3.552741e-01	ci right 3.623948e-01	k: 25118	n:70000
KS ci ratio: 9.568609e-02	ci left: 2.229278e-02	ci right 2.454696e-02	k: 1638	n:70000
CAMK2D   70000 perm   19 sec   (3654 perm/sec)   p_kst 2.340000e-02   p_cons 3.588286e-01   p_joint 4.230000e-02

Outputting figure to mutsig2_images.part000000000029/CAMK2D.3_1667_70000_0.0234_0.35883_0.0423.png
                gene_name: CAMK2D
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.044 

Current progress: 62 percent done.
CAMK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.221808e-02	ci left: 4.530892e-01	ci right 4.727324e-01	k: 4629	n:10000
Cons ci ratio: 7.066629e-02	ci left: 2.269154e-01	ci right 2.436391e-01	k: 2352	n:10000
KS ci ratio: 6.296845e-02	ci left: 2.704228e-01	ci right 2.881060e-01	k: 2792	n:10000
CAMK4   10000 perm   2 sec   (5115 perm/sec)   p_kst 2.792000e-01   p_cons 2.352000e-01   p_joint 4.629000e-01

Outputting figure to mutsig2_images.part000000000029/CAMK4.3_1466_10000_0.2792_0.2352_0.4629.png
                gene_name: CAMK4
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 64 percent done.
CAMKV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.183681e-02	ci left: 5.928296e-01	ci right 6.121107e-01	k: 6025	n:10000
Cons ci ratio: 1.711004e-02	ci left: 8.326658e-01	ci right 8.471356e-01	k: 8400	n:10000
KS ci ratio: 6.453735e-02	ci left: 2.607228e-01	ci right 2.782117e-01	k: 2694	n:10000
CAMKV   10000 perm   2 sec   (6256 perm/sec)   p_kst 2.694000e-01   p_cons 8.400000e-01   p_joint 6.025000e-01

Outputting figure to mutsig2_images.part000000000029/CAMKV.3_1546_10000_0.2694_0.84_0.6025.png
                gene_name: CAMKV
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 66 percent done.
CAPN10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.333963e-02	ci left: 2.139851e-01	ci right 2.303771e-01	k: 2221	n:10000
Cons ci ratio: 1.083417e-02	ci left: 9.238935e-01	ci right 9.340549e-01	k: 9291	n:10000
KS ci ratio: 1.259546e-01	ci left: 8.271234e-02	ci right 9.392883e-02	k: 882	n:10000
CAPN10   10000 perm   2 sec   (5451 perm/sec)   p_kst 8.820000e-02   p_cons 9.291000e-01   p_joint 2.221000e-01

Joint ci ratio: 5.340739e-02	ci left: 2.065012e-01	ci right 2.178826e-01	k: 4243	n:20000
Cons ci ratio: 7.559769e-03	ci left: 9.271946e-01	ci right 9.342795e-01	k: 18616	n:20000
KS ci ratio: 8.953869e-02	ci left: 8.352110e-02	ci right 9.139931e-02	k: 1748	n:20000
CAPN10   20000 perm   4 sec   (4823 perm/sec)   p_kst 8.740000e-02   p_cons 9.308000e-01   p_joint 2.121500e-01

Outputting figure to mutsig2_images.part000000000029/CAPN10.3_2222_20000_0.0874_0.9308_0.21215.png
                gene_name: CAPN10
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 68 percent done.
CAPN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.182134e-02	ci left: 9.111117e-01	ci right 9.220441e-01	k: 9167	n:10000
KS ci ratio: 7.968333e-03	ci left: 9.563913e-01	ci right 9.641376e-01	k: 9604	n:10000
CAPN6   10000 perm   2 sec   (5760 perm/sec)   p_kst 9.604000e-01   p_cons 9.167000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CAPN6.3_1974_10000_0.9604_0.9167_1.png
                gene_name: CAPN6
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
CAPZA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.396686e-02	ci left: 8.810413e-01	ci right 8.935320e-01	k: 8874	n:10000
Cons ci ratio: 1.985756e-02	ci left: 7.877635e-01	ci right 8.036639e-01	k: 7958	n:10000
KS ci ratio: 4.119669e-02	ci left: 4.652708e-01	ci right 4.849437e-01	k: 4751	n:10000
CAPZA2   10000 perm   2 sec   (5732 perm/sec)   p_kst 4.751000e-01   p_cons 7.958000e-01   p_joint 8.874000e-01

Outputting figure to mutsig2_images.part000000000029/CAPZA2.3_901_10000_0.4751_0.7958_0.8874.png
                gene_name: CAPZA2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 72 percent done.
CAPZA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.898779e-03	ci left: 9.881795e-01	ci right 9.921271e-01	k: 9903	n:10000
Cons ci ratio: 3.365594e-02	ci left: 5.658420e-01	ci right 5.853140e-01	k: 5756	n:10000
KS ci ratio: 2.357332e-02	ci left: 7.256263e-01	ci right 7.430370e-01	k: 7344	n:10000
CAPZA3   10000 perm   2 sec   (6310 perm/sec)   p_kst 7.344000e-01   p_cons 5.756000e-01   p_joint 9.903000e-01

Outputting figure to mutsig2_images.part000000000029/CAPZA3.3_904_10000_0.7344_0.5756_0.9903.png
                gene_name: CAPZA3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 74 percent done.
CACYBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.694478e-02	ci left: 6.698493e-01	ci right 6.882463e-01	k: 6791	n:10000
KS ci ratio: 1.139078e-02	ci left: 9.167762e-01	ci right 9.273764e-01	k: 9222	n:10000
CACYBP   10000 perm   1 sec   (6746 perm/sec)   p_kst 9.222000e-01   p_cons 6.791000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CACYBP.2_711_10000_0.9222_0.6791_1.png
                gene_name: CACYBP
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
CALB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.748407e-02	ci left: 6.610882e-01	ci right 6.796124e-01	k: 6704	n:10000
Cons ci ratio: 4.387659e-02	ci left: 4.340298e-01	ci right 4.536029e-01	k: 4438	n:10000
KS ci ratio: 3.802803e-02	ci left: 5.052515e-01	ci right 5.249398e-01	k: 5151	n:10000
CALB2   10000 perm   2 sec   (6190 perm/sec)   p_kst 5.151000e-01   p_cons 4.438000e-01   p_joint 6.704000e-01

Outputting figure to mutsig2_images.part000000000029/CALB2.2_860_10000_0.5151_0.4438_0.6704.png
                gene_name: CALB2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 77 percent done.
CALML5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.177090e-02	ci left: 4.583805e-01	ci right 4.780380e-01	k: 4682	n:10000
Cons ci ratio: 6.369573e-02	ci left: 2.658691e-01	ci right 2.834624e-01	k: 2746	n:10000
KS ci ratio: 5.802118e-02	ci left: 3.042144e-01	ci right 3.224944e-01	k: 3133	n:10000
CALML5   10000 perm   1 sec   (6941 perm/sec)   p_kst 3.133000e-01   p_cons 2.746000e-01   p_joint 4.682000e-01

Outputting figure to mutsig2_images.part000000000029/CALML5.2_445_10000_0.3133_0.2746_0.4682.png
                gene_name: CALML5
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 79 percent done.
CALR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.483567e-02	ci left: 3.288264e-01	ci right 3.474680e-01	k: 3381	n:10000
Cons ci ratio: 5.637744e-02	ci left: 3.166160e-01	ci right 3.350856e-01	k: 3258	n:10000
KS ci ratio: 3.446865e-02	ci left: 5.541131e-01	ci right 5.736497e-01	k: 5639	n:10000
CALR3   10000 perm   2 sec   (6482 perm/sec)   p_kst 5.639000e-01   p_cons 3.258000e-01   p_joint 3.381000e-01

Outputting figure to mutsig2_images.part000000000029/CALR3.2_1191_10000_0.5639_0.3258_0.3381.png
                gene_name: CALR3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 81 percent done.
CALU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.054346e-02	ci left: 1.837302e-01	ci right 1.992500e-01	k: 1914	n:10000
Cons ci ratio: 2.721092e-02	ci left: 6.655187e-01	ci right 6.839794e-01	k: 6748	n:10000
KS ci ratio: 1.035678e-01	ci left: 1.187734e-01	ci right 1.318457e-01	k: 1252	n:10000
CALU   10000 perm   2 sec   (6307 perm/sec)   p_kst 1.252000e-01   p_cons 6.748000e-01   p_joint 1.914000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 2.012938e-02	ci left: 6.480634e-01	ci right 6.612916e-01	k: 13094	n:20000
KS ci ratio: 7.268865e-02	ci left: 1.223163e-01	ci right 1.315924e-01	k: 2538	n:20000
CALU   20000 perm   4 sec   (5572 perm/sec)   p_kst 1.269000e-01   p_cons 6.547000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CALU.2_1170_20000_0.1269_0.6547_1.png
                gene_name: CALU
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
CAMK2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.125490e-02	ci left: 7.644585e-01	ci right 7.809823e-01	k: 7728	n:10000
Cons ci ratio: 6.364973e-03	ci left: 9.711128e-01	ci right 9.774068e-01	k: 9744	n:10000
KS ci ratio: 3.283636e-02	ci left: 5.778774e-01	ci right 5.972716e-01	k: 5876	n:10000
CAMK2B   10000 perm   2 sec   (6022 perm/sec)   p_kst 5.876000e-01   p_cons 9.744000e-01   p_joint 7.728000e-01

Outputting figure to mutsig2_images.part000000000029/CAMK2B.2_2096_10000_0.5876_0.9744_0.7728.png
                gene_name: CAMK2B
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 85 percent done.
CAMK2G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.370007e-02	ci left: 8.849326e-01	ci right 8.972385e-01	k: 8912	n:10000
Cons ci ratio: 3.070229e-03	ci left: 9.922835e-01	ci right 9.954183e-01	k: 9940	n:10000
KS ci ratio: 1.588410e-02	ci left: 8.520244e-01	ci right 8.657658e-01	k: 8590	n:10000
CAMK2G   10000 perm   2 sec   (6119 perm/sec)   p_kst 8.590000e-01   p_cons 9.940000e-01   p_joint 8.912000e-01

Outputting figure to mutsig2_images.part000000000029/CAMK2G.2_1855_10000_0.859_0.994_0.8912.png
                gene_name: CAMK2G
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 87 percent done.
CAMSAP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.039235e-02	ci left: 9.293697e-01	ci right 9.391755e-01	k: 9344	n:10000
Cons ci ratio: 1.056065e-02	ci left: 9.273022e-01	ci right 9.372442e-01	k: 9324	n:10000
KS ci ratio: 2.040594e-02	ci left: 7.786397e-01	ci right 7.947930e-01	k: 7868	n:10000
CAMSAP1L1   10000 perm   2 sec   (5266 perm/sec)   p_kst 7.868000e-01   p_cons 9.324000e-01   p_joint 9.344000e-01

Outputting figure to mutsig2_images.part000000000029/CAMSAP1L1.2_4505_10000_0.7868_0.9324_0.9344.png
                gene_name: CAMSAP1L1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 89 percent done.
CANX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.320349e-02	ci left: 5.724607e-01	ci right 5.918914e-01	k: 5822	n:10000
Cons ci ratio: 1.383382e-02	ci left: 8.829867e-01	ci right 8.953856e-01	k: 8893	n:10000
KS ci ratio: 4.301616e-02	ci left: 4.438072e-01	ci right 4.634199e-01	k: 4536	n:10000
CANX   10000 perm   2 sec   (6229 perm/sec)   p_kst 4.536000e-01   p_cons 8.893000e-01   p_joint 5.822000e-01

Outputting figure to mutsig2_images.part000000000029/CANX.2_1835_10000_0.4536_0.8893_0.5822.png
                gene_name: CANX
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 91 percent done.
CAPN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.664198e-03	ci left: 9.972795e-01	ci right 9.990094e-01	k: 9983	n:10000
KS ci ratio: 4.054177e-02	ci left: 4.732619e-01	ci right 4.929479e-01	k: 4831	n:10000
CAPN1   10000 perm   2 sec   (6179 perm/sec)   p_kst 4.831000e-01   p_cons 9.983000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CAPN1.2_2229_10000_0.4831_0.9983_1.png
                gene_name: CAPN1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
CAPN11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.788293e-02	ci left: 6.546456e-01	ci right 6.732588e-01	k: 6640	n:10000
Cons ci ratio: 3.918818e-03	ci left: 9.880698e-01	ci right 9.920369e-01	k: 9902	n:10000
KS ci ratio: 3.978639e-02	ci left: 4.826547e-01	ci right 5.023497e-01	k: 4925	n:10000
CAPN11   10000 perm   2 sec   (5838 perm/sec)   p_kst 4.925000e-01   p_cons 9.902000e-01   p_joint 6.640000e-01

Outputting figure to mutsig2_images.part000000000029/CAPN11.2_2312_10000_0.4925_0.9902_0.664.png
                gene_name: CAPN11
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 94 percent done.
CAPN12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.345808e-01	ci left: 7.291428e-02	ci right 8.353297e-02	k: 781	n:10000
Cons ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
KS ci ratio: 1.131817e-01	ci left: 1.010066e-01	ci right 1.132234e-01	k: 1070	n:10000
CAPN12   10000 perm   2 sec   (5779 perm/sec)   p_kst 1.070000e-01   p_cons 1.072000e-01   p_joint 7.810000e-02

Joint ci ratio: 1.123751e-01	ci left: 5.411849e-02	ci right 6.061095e-02	k: 1146	n:20000
Cons ci ratio: 8.103225e-02	ci left: 1.004895e-01	ci right 1.090258e-01	k: 2094	n:20000
KS ci ratio: 8.049680e-02	ci left: 1.017171e-01	ci right 1.102979e-01	k: 2119	n:20000
CAPN12   20000 perm   4 sec   (5259 perm/sec)   p_kst 1.059500e-01   p_cons 1.047000e-01   p_joint 5.730000e-02

Joint ci ratio: 1.065523e-01	ci left: 4.086211e-02	ci right 4.549355e-02	k: 1294	n:30000
Cons ci ratio: 6.713963e-02	ci left: 9.859726e-02	ci right 1.054800e-01	k: 3060	n:30000
KS ci ratio: 6.620417e-02	ci left: 1.011587e-01	ci right 1.081181e-01	k: 3138	n:30000
CAPN12   30000 perm   6 sec   (4878 perm/sec)   p_kst 1.046000e-01   p_cons 1.020000e-01   p_joint 4.313333e-02

Joint ci ratio: 6.434756e-02	ci left: 8.216154e-02	ci right 8.764890e-02	k: 3395	n:40000
Cons ci ratio: 5.829071e-02	ci left: 9.860641e-02	ci right 1.045516e-01	k: 4062	n:40000
KS ci ratio: 5.709374e-02	ci left: 1.024070e-01	ci right 1.084504e-01	k: 4216	n:40000
CAPN12   40000 perm   8 sec   (4771 perm/sec)   p_kst 1.054000e-01   p_cons 1.015500e-01   p_joint 8.487500e-02

Outputting figure to mutsig2_images.part000000000029/CAPN12.2_2244_40000_0.1054_0.10155_0.084875.png
                gene_name: CAPN12
               theta_stop: 0.064 
                    nperm: 40000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.088 

Current progress: 96 percent done.
CAPN13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.432495e-02	ci left: 2.620092e-01	ci right 2.795245e-01	k: 2707	n:10000
Cons ci ratio: 1.157396e-01	ci left: 9.691393e-02	ci right 1.089185e-01	k: 1028	n:10000
KS ci ratio: 3.490513e-02	ci left: 5.479000e-01	ci right 5.674664e-01	k: 5577	n:10000
CAPN13   10000 perm   2 sec   (6253 perm/sec)   p_kst 5.577000e-01   p_cons 1.028000e-01   p_joint 2.707000e-01

Joint ci ratio: 5.048835e-02	ci left: 2.257183e-01	ci right 2.374598e-01	k: 4631	n:20000
Cons ci ratio: 8.144539e-02	ci left: 9.955670e-02	ci right 1.080589e-01	k: 2075	n:20000
KS ci ratio: 2.440427e-02	ci left: 5.563924e-01	ci right 5.701891e-01	k: 11266	n:20000
CAPN13   20000 perm   4 sec   (5539 perm/sec)   p_kst 5.633000e-01   p_cons 1.037500e-01   p_joint 2.315500e-01

Outputting figure to mutsig2_images.part000000000029/CAPN13.2_2094_20000_0.5633_0.10375_0.23155.png
                gene_name: CAPN13
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 98 percent done.
CAPZA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.617064e-02	ci left: 4.091051e-01	ci right 4.285422e-01	k: 4188	n:10000
KS ci ratio: 1.382680e-02	ci left: 8.830891e-01	ci right 8.954831e-01	k: 8894	n:10000
CAPZA1   10000 perm   1 sec   (6985 perm/sec)   p_kst 8.894000e-01   p_cons 4.188000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000029/CAPZA1.2_901_10000_0.8894_0.4188_1.png
                gene_name: CAPZA1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000029
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 29 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1712>
Subject: Job 9893871: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1712>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000030> was used as the working directory.
Started at Sat Oct  6 00:00:24 2012
Results reported at Sat Oct  6 01:12:19 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000030.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000030.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 30  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000030.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   4408.77 sec.
    Max Memory :      3625 MB
    Max Swap   :      5941 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
30
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 30
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 30: processing genes 2615 - 2705
Calculating significance of each gene.
Using projection method.
2615	CARD8	2.095584e-01
2616	CARD9	5.934092e-01
2617	CARHSP1	1
2618	CARKD	5.943618e-01
2619	CARM1	7.072759e-01
2620	CARNS1	1
In gene CARS the following bins exceed PROBCAP:
    COAD-AA-3538	categ 6	N = 2614    n = 1	mu =   1.03e-07
2621	CARS	3.267650e-01
2622	CARS2	8.953550e-01
2623	CARTPT	4.449541e-01
2624	CASC1	1.464599e-01
2625	CASC3	9.817014e-01
2626	CASC4	6.843894e-01
2627	CASC5	9.138083e-01
2628	CASD1	2.147669e-01
2629	CASK	6.509018e-01
2630	CASKIN1	1
2631	CASKIN2	1
2632	CASP1	5.350479e-01
2633	CASP10	5.988620e-01
2634	CASP14	1.560778e-05
2635	CASP2	3.694321e-01
2636	CASP3	5.085166e-01
2637	CASP4	4.386481e-01
2638	CASP5	2.239134e-01
2639	CASP6	3.936608e-01
2640	CASP7	7.116947e-01
2641	CASP8	2.143994e-04
2642	CASP8AP2	8.860217e-02
2643	CASP9	5.245434e-01
2644	CASQ1	7.825189e-01
2645	CASQ2	3.449275e-01
2646	CASR	7.662838e-01
2647	CASS4	3.399849e-01
2648	CAST	8.275384e-01
2649	CASZ1	3.736858e-01
2650	CAT	4.913264e-01
2651	CATSPER1	3.022874e-01
2652	CATSPER2	7.024864e-01
2653	CATSPER3	6.120387e-01
2654	CATSPER4	7.932231e-02
2655	CATSPERB	4.896342e-02
2656	CATSPERG	9.512457e-01
2657	CAV1	2.890944e-01
2658	CAV2	6.034863e-01
2659	CAV3	2.755095e-02
2660	CBARA1	7.717670e-01
2661	CBFA2T2	5.157799e-01
2662	CBFA2T3	1
2663	CBFB	4.079205e-01
2664	CBL	8.437894e-01
2665	CBLB	1.671764e-02
2666	CBLC	1
2667	CBLL1	8.957519e-01
2668	CBLN1	7.604330e-01
2669	CBLN2	1
2670	CBLN3	4.353766e-01
2671	CBLN4	4.269543e-01
2672	CBR1	1
2673	CBR3	1
2674	CBR4	2.778788e-01
2675	CBS	3.859810e-01
2676	CBWD1	1
2677	CBWD2	1
2678	CBWD6	1
2679	CBX1	1
2680	CBX2	7.640389e-01
2681	CBX3	1.870807e-02
2682	CBX4	1
2683	CBX5	3.962049e-01
2684	CBX6	1
2685	CBX7	7.179009e-01
In gene CBX8 the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 1175    n = 1	mu =   2.96e-07
2686	CBX8	1.817108e-01
2687	CBY1	4.051019e-01
2688	CC2D1A	9.827609e-01
2689	CC2D1B	5.755530e-01
2690	CC2D2A	7.838934e-01
2691	CC2D2B	7.382787e-01
2692	CCAR1	4.322437e-01
2693	CCBE1	2.687999e-01
2694	CCBL1	5.513103e-01
2695	CCBL2	1.148137e-02
2696	CCBP2	5.441708e-06
2697	CCDC101	6.178936e-01
2698	CCDC102A	9.344906e-01
2699	CCDC102B	1.882703e-01
2700	CCDC103	1.029930e-01
2701	CCDC104	2.355691e-01
2702	CCDC105	7.517281e-01
2703	CCDC106	3.803978e-01
2704	CCDC107	1
2705	CCDC108	2.881494e-01
Done

Running MutSig 2:
Scatter job 30: processing genes 2615 - 2705
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CASP8AP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.828636e-02	ci left: 8.136481e-01	ci right 8.287643e-01	k: 8213	n:10000
Cons ci ratio: 1.761639e-02	ci left: 8.245259e-01	ci right 8.392802e-01	k: 8320	n:10000
KS ci ratio: 2.781424e-02	ci left: 6.557528e-01	ci right 6.743510e-01	k: 6651	n:10000
CASP8AP2   10000 perm   3 sec   (3825 perm/sec)   p_kst 6.651000e-01   p_cons 8.320000e-01   p_joint 8.213000e-01

Outputting figure to mutsig2_images.part000000000030/CASP8AP2.18_5937_10000_0.6651_0.832_0.8213.png
                gene_name: CASP8AP2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 2 percent done.
CATSPERB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.065239e-02	ci left: 9.261656e-01	ci right 9.361814e-01	k: 9313	n:10000
Cons ci ratio: 1.422396e-02	ci left: 8.772546e-01	ci right 8.899209e-01	k: 8837	n:10000
KS ci ratio: 2.207059e-02	ci left: 7.507962e-01	ci right 7.676526e-01	k: 7593	n:10000
CATSPERB   10000 perm   2 sec   (4648 perm/sec)   p_kst 7.593000e-01   p_cons 8.837000e-01   p_joint 9.313000e-01

Outputting figure to mutsig2_images.part000000000030/CATSPERB.14_3455_10000_0.7593_0.8837_0.9313.png
                gene_name: CATSPERB
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 3 percent done.
CCDC108
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.578961e-02	ci left: 2.533030e-01	ci right 2.706359e-01	k: 2619	n:10000
Cons ci ratio: 6.092113e-02	ci left: 2.837935e-01	ci right 3.017273e-01	k: 2927	n:10000
KS ci ratio: 9.159391e-02	ci left: 1.476637e-01	ci right 1.619380e-01	k: 1547	n:10000
CCDC108   10000 perm   3 sec   (3923 perm/sec)   p_kst 1.547000e-01   p_cons 2.927000e-01   p_joint 2.619000e-01

Outputting figure to mutsig2_images.part000000000030/CCDC108.14_6058_10000_0.1547_0.2927_0.2619.png
                gene_name: CCDC108
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 5 percent done.
CASC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.592170e-02	ci left: 1.361934e-01	ci right 1.500152e-01	k: 1430	n:10000
Cons ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
KS ci ratio: 4.380558e-02	ci left: 4.348278e-01	ci right 4.544044e-01	k: 4446	n:10000
CASC1   10000 perm   2 sec   (4963 perm/sec)   p_kst 4.446000e-01   p_cons 4.050000e-02   p_joint 1.430000e-01

Joint ci ratio: 6.633391e-02	ci left: 1.436968e-01	ci right 1.536056e-01	k: 2972	n:20000
Cons ci ratio: 1.312415e-01	ci left: 3.989122e-02	ci right 4.554270e-02	k: 853	n:20000
KS ci ratio: 3.117623e-02	ci left: 4.345521e-01	ci right 4.483649e-01	k: 8829	n:20000
CASC1   20000 perm   4 sec   (4507 perm/sec)   p_kst 4.414500e-01   p_cons 4.265000e-02   p_joint 1.486000e-01

Joint ci ratio: 4.385645e-02	ci left: 2.056670e-01	ci right 2.149225e-01	k: 6308	n:30000
Cons ci ratio: 1.024447e-01	ci left: 4.414462e-02	ci right 4.894369e-02	k: 1395	n:30000
KS ci ratio: 2.565397e-02	ci left: 4.320092e-01	ci right 4.432696e-01	k: 13129	n:30000
CASC1   30000 perm   7 sec   (4339 perm/sec)   p_kst 4.376333e-01   p_cons 4.650000e-02   p_joint 2.102667e-01

Joint ci ratio: 4.577618e-02	ci left: 1.513670e-01	ci right 1.584832e-01	k: 6196	n:40000
Cons ci ratio: 9.179683e-02	ci left: 4.159509e-02	ci right 4.562151e-02	k: 1743	n:40000
KS ci ratio: 2.247685e-02	ci left: 4.270633e-01	ci right 4.367966e-01	k: 17277	n:40000
CASC1   40000 perm   9 sec   (4212 perm/sec)   p_kst 4.319250e-01   p_cons 4.357500e-02   p_joint 1.549000e-01

Outputting figure to mutsig2_images.part000000000030/CASC1.11_2414_40000_0.43193_0.043575_0.1549.png
                gene_name: CASC1
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 7 percent done.
CASC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.012179e-02	ci left: 2.892436e-01	ci right 3.072740e-01	k: 2982	n:10000
Cons ci ratio: 1.012706e-01	ci left: 1.236626e-01	ci right 1.369535e-01	k: 1302	n:10000
KS ci ratio: 3.908455e-02	ci left: 4.915510e-01	ci right 5.112482e-01	k: 5014	n:10000
CASC5   10000 perm   2 sec   (4092 perm/sec)   p_kst 5.014000e-01   p_cons 1.302000e-01   p_joint 2.982000e-01

Joint ci ratio: 3.956740e-02	ci left: 3.226378e-01	ci right 3.357119e-01	k: 6583	n:20000
Cons ci ratio: 7.255777e-02	ci left: 1.227101e-01	ci right 1.319986e-01	k: 2546	n:20000
KS ci ratio: 2.825382e-02	ci left: 4.834486e-01	ci right 4.973542e-01	k: 9808	n:20000
CASC5   20000 perm   5 sec   (3710 perm/sec)   p_kst 4.904000e-01   p_cons 1.273000e-01   p_joint 3.291500e-01

Outputting figure to mutsig2_images.part000000000030/CASC5.11_7133_20000_0.4904_0.1273_0.32915.png
                gene_name: CASC5
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 8 percent done.
CASP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.915544e-02	ci left: 6.343234e-01	ci right 6.531928e-01	k: 6438	n:10000
Cons ci ratio: 4.237119e-02	ci left: 4.512924e-01	ci right 4.709303e-01	k: 4611	n:10000
KS ci ratio: 4.032327e-02	ci left: 4.759595e-01	ci right 4.956488e-01	k: 4858	n:10000
CASP8   10000 perm   2 sec   (4770 perm/sec)   p_kst 4.858000e-01   p_cons 4.611000e-01   p_joint 6.438000e-01

Outputting figure to mutsig2_images.part000000000030/CASP8.11_1753_10000_0.4858_0.4611_0.6438.png
                gene_name: CASP8
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 10 percent done.
CCBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.744606e-02	ci left: 8.272725e-01	ci right 8.419321e-01	k: 8347	n:10000
Cons ci ratio: 3.245844e-02	ci left: 5.834959e-01	ci right 6.028498e-01	k: 5932	n:10000
KS ci ratio: 1.224168e-02	ci left: 9.054543e-01	ci right 9.167049e-01	k: 9112	n:10000
CCBP2   10000 perm   2 sec   (5431 perm/sec)   p_kst 9.112000e-01   p_cons 5.932000e-01   p_joint 8.347000e-01

Outputting figure to mutsig2_images.part000000000030/CCBP2.10_1159_10000_0.9112_0.5932_0.8347.png
                gene_name: CCBP2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 12 percent done.
CASP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.540245e-02	ci left: 8.594729e-01	ci right 8.729130e-01	k: 8663	n:10000
Cons ci ratio: 4.398338e-02	ci left: 4.328329e-01	ci right 4.524006e-01	k: 4426	n:10000
KS ci ratio: 1.539580e-02	ci left: 8.595750e-01	ci right 8.730108e-01	k: 8664	n:10000
CASP14   10000 perm   2 sec   (5778 perm/sec)   p_kst 8.664000e-01   p_cons 4.426000e-01   p_joint 8.663000e-01

Outputting figure to mutsig2_images.part000000000030/CASP14.9_753_10000_0.8664_0.4426_0.8663.png
                gene_name: CASP14
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 14 percent done.
CASZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.298147e-02	ci left: 4.442063e-01	ci right 4.638205e-01	k: 4540	n:10000
Cons ci ratio: 3.078365e-02	ci left: 6.088960e-01	ci right 6.280350e-01	k: 6185	n:10000
KS ci ratio: 4.824160e-02	ci left: 3.879889e-01	ci right 4.072708e-01	k: 3976	n:10000
CASZ1   10000 perm   2 sec   (4246 perm/sec)   p_kst 3.976000e-01   p_cons 6.185000e-01   p_joint 4.540000e-01

Outputting figure to mutsig2_images.part000000000030/CASZ1.9_5356_10000_0.3976_0.6185_0.454.png
                gene_name: CASZ1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 15 percent done.
CBLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.436501e-01	ci left: 6.430174e-02	ci right 7.435091e-02	k: 692	n:10000
Cons ci ratio: 7.628204e-02	ci left: 2.008694e-01	ci right 2.169006e-01	k: 2088	n:10000
KS ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
CBLB   10000 perm   2 sec   (4932 perm/sec)   p_kst 4.200000e-02   p_cons 2.088000e-01   p_joint 6.920000e-02

Joint ci ratio: 9.477110e-02	ci left: 7.505352e-02	ci right 8.256947e-02	k: 1575	n:20000
Cons ci ratio: 5.275320e-02	ci left: 2.106105e-01	ci right 2.220721e-01	k: 4326	n:20000
KS ci ratio: 1.293542e-01	ci left: 4.105370e-02	ci right 4.677985e-02	k: 877	n:20000
CBLB   20000 perm   5 sec   (4436 perm/sec)   p_kst 4.385000e-02   p_cons 2.163000e-01   p_joint 7.875000e-02

Joint ci ratio: 8.015631e-02	ci left: 7.086623e-02	ci right 7.681661e-02	k: 2214	n:30000
Cons ci ratio: 4.302856e-02	ci left: 2.120158e-01	ci right 2.213725e-01	k: 6500	n:30000
KS ci ratio: 1.054507e-01	ci left: 4.170676e-02	ci right 4.638206e-02	k: 1320	n:30000
CBLB   30000 perm   7 sec   (4237 perm/sec)   p_kst 4.400000e-02   p_cons 2.166667e-01   p_joint 7.380000e-02

Joint ci ratio: 8.507585e-02	ci left: 4.825181e-02	ci right 5.256376e-02	k: 2015	n:40000
Cons ci ratio: 3.590261e-02	ci left: 2.254608e-01	ci right 2.337285e-01	k: 9183	n:40000
KS ci ratio: 9.185191e-02	ci left: 4.154619e-02	ci right 4.557042e-02	k: 1741	n:40000
CBLB   40000 perm   10 sec   (4045 perm/sec)   p_kst 4.352500e-02   p_cons 2.295750e-01   p_joint 5.037500e-02

Outputting figure to mutsig2_images.part000000000030/CBLB.8_3021_40000_0.043525_0.22958_0.050375.png
                gene_name: CBLB
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.053 

Current progress: 17 percent done.
CASR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.468960e-02	ci left: 1.393291e-01	ci right 1.532776e-01	k: 1462	n:10000
Cons ci ratio: 3.344976e-02	ci left: 5.688503e-01	ci right 5.883039e-01	k: 5786	n:10000
KS ci ratio: 1.541967e-01	ci left: 5.600212e-02	ci right 6.545578e-02	k: 606	n:10000
CASR   10000 perm   2 sec   (5004 perm/sec)   p_kst 6.060000e-02   p_cons 5.786000e-01   p_joint 1.462000e-01

Joint ci ratio: 7.579852e-02	ci left: 1.134614e-01	ci right 1.224500e-01	k: 2358	n:20000
Cons ci ratio: 2.343155e-02	ci left: 5.763304e-01	ci right 5.900454e-01	k: 11664	n:20000
KS ci ratio: 1.100038e-01	ci left: 5.640686e-02	ci right 6.302186e-02	k: 1193	n:20000
CASR   20000 perm   4 sec   (4519 perm/sec)   p_kst 5.965000e-02   p_cons 5.832000e-01   p_joint 1.179000e-01

Joint ci ratio: 6.571422e-02	ci left: 1.025382e-01	ci right 1.095383e-01	k: 3180	n:30000
Cons ci ratio: 1.912166e-02	ci left: 5.778636e-01	ci right 5.890536e-01	k: 17504	n:30000
KS ci ratio: 8.934188e-02	ci left: 5.759973e-02	ci right 6.301914e-02	k: 1808	n:30000
CASR   30000 perm   7 sec   (4344 perm/sec)   p_kst 6.026667e-02   p_cons 5.834667e-01   p_joint 1.060000e-01

Outputting figure to mutsig2_images.part000000000030/CASR.7_3291_30000_0.060267_0.58347_0.106.png
                gene_name: CASR
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 19 percent done.
CCAR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.679164e-02	ci left: 1.340383e-01	ci right 1.477716e-01	k: 1408	n:10000
Cons ci ratio: 4.542946e-02	ci left: 4.169786e-01	ci right 4.364641e-01	k: 4267	n:10000
KS ci ratio: 1.322110e-01	ci left: 7.543425e-02	ci right 8.621143e-02	k: 807	n:10000
CCAR1   10000 perm   2 sec   (4600 perm/sec)   p_kst 8.070000e-02   p_cons 4.267000e-01   p_joint 1.408000e-01

Joint ci ratio: 6.714503e-02	ci left: 1.406893e-01	ci right 1.505140e-01	k: 2911	n:20000
Cons ci ratio: 3.243025e-02	ci left: 4.152418e-01	ci right 4.289808e-01	k: 8442	n:20000
KS ci ratio: 9.286544e-02	ci left: 7.798885e-02	ci right 8.563325e-02	k: 1635	n:20000
CCAR1   20000 perm   5 sec   (4230 perm/sec)   p_kst 8.175000e-02   p_cons 4.221000e-01   p_joint 1.455500e-01

Outputting figure to mutsig2_images.part000000000030/CCAR1.7_3549_20000_0.08175_0.4221_0.14555.png
                gene_name: CCAR1
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 20 percent done.
CARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
Cons ci ratio: 1.251787e-01	ci left: 8.368370e-02	ci right 9.495688e-02	k: 892	n:10000
KS ci ratio: 1.099325e-01	ci left: 1.065655e-01	ci right 1.190610e-01	k: 1127	n:10000
CARS   10000 perm   2 sec   (4563 perm/sec)   p_kst 1.127000e-01   p_cons 8.920000e-02   p_joint 1.131000e-01

Joint ci ratio: 6.536829e-02	ci left: 1.473954e-01	ci right 1.574059e-01	k: 3047	n:20000
Cons ci ratio: 8.800347e-02	ci left: 8.626460e-02	ci right 9.425499e-02	k: 1804	n:20000
KS ci ratio: 7.758051e-02	ci left: 1.087912e-01	ci right 1.176216e-01	k: 2263	n:20000
CARS   20000 perm   5 sec   (4098 perm/sec)   p_kst 1.131500e-01   p_cons 9.020000e-02   p_joint 1.523500e-01

Outputting figure to mutsig2_images.part000000000030/CARS.6_2643_20000_0.11315_0.0902_0.15235.png
                gene_name: CARS
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 22 percent done.
CASD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.389164e-01	ci left: 1.096414e-02	ci right 1.552595e-02	k: 131	n:10000
Cons ci ratio: 4.931551e-02	ci left: 3.775373e-01	ci right 3.967285e-01	k: 3871	n:10000
KS ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
CASD1   10000 perm   2 sec   (5257 perm/sec)   p_kst 1.100000e-03   p_cons 3.871000e-01   p_joint 1.310000e-02

Joint ci ratio: 3.349842e-01	ci left: 5.662386e-03	ci right 7.984485e-03	k: 135	n:20000
Cons ci ratio: 3.494837e-02	ci left: 3.793446e-01	ci right 3.928885e-01	k: 7722	n:20000
KS ci ratio: 7.682562e-01	ci left: 8.090923e-04	ci right 1.844697e-03	k: 25	n:20000
CASD1   20000 perm   4 sec   (4557 perm/sec)   p_kst 1.250000e-03   p_cons 3.861000e-01   p_joint 6.750000e-03

Joint ci ratio: 2.080031e-01	ci left: 1.048237e-02	ci right 1.294689e-02	k: 350	n:30000
Cons ci ratio: 2.869127e-02	ci left: 3.780259e-01	ci right 3.890634e-01	k: 11506	n:30000
KS ci ratio: 6.925834e-01	ci left: 7.022045e-04	ci right 1.466416e-03	k: 31	n:30000
CASD1   30000 perm   7 sec   (4263 perm/sec)   p_kst 1.033333e-03   p_cons 3.835333e-01   p_joint 1.166667e-02

Joint ci ratio: 2.145667e-01	ci left: 7.386910e-03	ci right 9.185572e-03	k: 330	n:40000
Cons ci ratio: 2.486794e-02	ci left: 3.783819e-01	ci right 3.879351e-01	k: 15326	n:40000
KS ci ratio: 6.118797e-01	ci left: 7.145078e-04	ci right 1.361470e-03	k: 40	n:40000
CASD1   40000 perm   9 sec   (4214 perm/sec)   p_kst 1.000000e-03   p_cons 3.831500e-01   p_joint 8.250000e-03

Joint ci ratio: 2.167325e-01	ci left: 5.795477e-03	ci right 7.222727e-03	k: 324	n:50000
Cons ci ratio: 2.212047e-02	ci left: 3.814900e-01	ci right 3.900432e-01	k: 19288	n:50000
KS ci ratio: 5.655260e-01	ci left: 6.907559e-04	ci right 1.249807e-03	k: 47	n:50000
CASD1   50000 perm   12 sec   (4156 perm/sec)   p_kst 9.400000e-04   p_cons 3.857600e-01   p_joint 6.480000e-03

Joint ci ratio: 2.192376e-01	ci left: 4.718971e-03	ci right 5.896326e-03	k: 317	n:60000
Cons ci ratio: 2.021786e-02	ci left: 3.812868e-01	ci right 3.890910e-01	k: 23111	n:60000
KS ci ratio: 4.897345e-01	ci left: 8.069402e-04	ci right 1.343209e-03	k: 63	n:60000
CASD1   60000 perm   15 sec   (4105 perm/sec)   p_kst 1.050000e-03   p_cons 3.851833e-01   p_joint 5.283333e-03

Joint ci ratio: 2.102175e-01	ci left: 4.423254e-03	ci right 5.475570e-03	k: 345	n:70000
Cons ci ratio: 1.871076e-02	ci left: 3.817638e-01	ci right 3.889886e-01	k: 26976	n:70000
KS ci ratio: 4.617355e-01	ci left: 7.922479e-04	ci right 1.279214e-03	k: 71	n:70000
CASD1   70000 perm   17 sec   (4055 perm/sec)   p_kst 1.014286e-03   p_cons 3.853714e-01   p_joint 4.928571e-03

Joint ci ratio: 1.982669e-01	ci left: 4.380366e-03	ci right 5.356074e-03	k: 388	n:80000
Cons ci ratio: 1.748701e-02	ci left: 3.824123e-01	ci right 3.891710e-01	k: 30863	n:80000
KS ci ratio: 4.249551e-01	ci left: 8.376049e-04	ci right 1.299809e-03	k: 84	n:80000
CASD1   80000 perm   20 sec   (4003 perm/sec)   p_kst 1.050000e-03   p_cons 3.857875e-01   p_joint 4.850000e-03

Joint ci ratio: 1.963037e-01	ci left: 3.978073e-03	ci right 4.854342e-03	k: 396	n:90000
Cons ci ratio: 1.646181e-02	ci left: 3.833279e-01	ci right 3.897016e-01	k: 34786	n:90000
KS ci ratio: 3.998677e-01	ci left: 8.540888e-04	ci right 1.290210e-03	k: 95	n:90000
CASD1   90000 perm   23 sec   (3952 perm/sec)   p_kst 1.055556e-03   p_cons 3.865111e-01   p_joint 4.400000e-03

Joint ci ratio: 1.999177e-01	ci left: 3.447113e-03	ci right 4.222103e-03	k: 382	n:100000
Cons ci ratio: 1.563030e-02	ci left: 3.830908e-01	ci right 3.891358e-01	k: 38611	n:100000
KS ci ratio: 3.805403e-01	ci left: 8.588738e-04	ci right 1.270948e-03	k: 105	n:100000
CASD1   100000 perm   26 sec   (3897 perm/sec)   p_kst 1.050000e-03   p_cons 3.861100e-01   p_joint 3.820000e-03

Joint ci ratio: 2.056904e-01	ci left: 2.952444e-03	ci right 3.637794e-03	k: 361	n:110000
Cons ci ratio: 1.489296e-02	ci left: 3.835482e-01	ci right 3.893123e-01	k: 42507	n:110000
KS ci ratio: 3.702149e-01	ci left: 8.301917e-04	ci right 1.215080e-03	k: 111	n:110000
CASD1   110000 perm   29 sec   (3794 perm/sec)   p_kst 1.009091e-03   p_cons 3.864273e-01   p_joint 3.281818e-03

Joint ci ratio: 2.198772e-01	ci left: 2.351285e-03	ci right 2.939827e-03	k: 316	n:120000
Cons ci ratio: 1.427632e-02	ci left: 3.830944e-01	ci right 3.886112e-01	k: 46302	n:120000
KS ci ratio: 3.504313e-01	ci left: 8.595444e-04	ci right 1.231914e-03	k: 124	n:120000
CASD1   120000 perm   32 sec   (3743 perm/sec)   p_kst 1.033333e-03   p_cons 3.858500e-01   p_joint 2.633333e-03

Joint ci ratio: 2.223746e-01	ci left: 2.119524e-03	ci right 2.656903e-03	k: 309	n:130000
Cons ci ratio: 1.371971e-02	ci left: 3.830834e-01	ci right 3.883832e-01	k: 50145	n:130000
KS ci ratio: 3.299432e-01	ci left: 9.060015e-04	ci right 1.270688e-03	k: 140	n:130000
CASD1   130000 perm   35 sec   (3695 perm/sec)   p_kst 1.076923e-03   p_cons 3.857308e-01   p_joint 2.376923e-03

Joint ci ratio: 2.158617e-01	ci left: 2.096394e-03	ci right 2.610279e-03	k: 328	n:140000
Cons ci ratio: 1.320181e-02	ci left: 3.838553e-01	ci right 3.889637e-01	k: 54097	n:140000
KS ci ratio: 3.231452e-01	ci left: 8.806295e-04	ci right 1.226286e-03	k: 146	n:140000
CASD1   140000 perm   38 sec   (3651 perm/sec)   p_kst 1.042857e-03   p_cons 3.864071e-01   p_joint 2.342857e-03

Joint ci ratio: 2.178789e-01	ci left: 1.918787e-03	ci right 2.394118e-03	k: 322	n:150000
Cons ci ratio: 1.276405e-02	ci left: 3.835752e-01	ci right 3.885092e-01	k: 57906	n:150000
KS ci ratio: 3.078169e-01	ci left: 9.140105e-04	ci right 1.252418e-03	k: 161	n:150000
CASD1   150000 perm   42 sec   (3605 perm/sec)   p_kst 1.073333e-03   p_cons 3.860400e-01   p_joint 2.146667e-03

Joint ci ratio: 2.099048e-01	ci left: 1.946748e-03	ci right 2.409087e-03	k: 347	n:160000
Cons ci ratio: 1.234742e-02	ci left: 3.840880e-01	ci right 3.888661e-01	k: 61836	n:160000
KS ci ratio: 2.987356e-01	ci left: 9.146304e-04	ci right 1.241382e-03	k: 171	n:160000
CASD1   160000 perm   45 sec   (3561 perm/sec)   p_kst 1.068750e-03   p_cons 3.864750e-01   p_joint 2.168750e-03

Joint ci ratio: 2.063827e-01	ci left: 1.899138e-03	ci right 2.341646e-03	k: 359	n:170000
Cons ci ratio: 1.198259e-02	ci left: 3.840080e-01	ci right 3.886430e-01	k: 65675	n:170000
KS ci ratio: 2.928394e-01	ci left: 8.989490e-04	ci right 1.212585e-03	k: 178	n:170000
CASD1   170000 perm   48 sec   (3512 perm/sec)   p_kst 1.047059e-03   p_cons 3.863235e-01   p_joint 2.111765e-03

Joint ci ratio: 1.384582e-01	ci left: 4.126285e-03	ci right 4.745398e-03	k: 797	n:180000
Cons ci ratio: 1.164762e-02	ci left: 3.839665e-01	ci right 3.884705e-01	k: 69519	n:180000
KS ci ratio: 2.849875e-01	ci left: 9.005381e-04	ci right 1.204789e-03	k: 188	n:180000
CASD1   180000 perm   52 sec   (3462 perm/sec)   p_kst 1.044444e-03   p_cons 3.862167e-01   p_joint 4.427778e-03

Joint ci ratio: 1.419083e-01	ci left: 3.716069e-03	ci right 4.288701e-03	k: 759	n:190000
Cons ci ratio: 1.132893e-02	ci left: 3.843621e-01	ci right 3.887466e-01	k: 73445	n:190000
KS ci ratio: 2.784363e-01	ci left: 8.971637e-04	ci right 1.192085e-03	k: 197	n:190000
CASD1   190000 perm   56 sec   (3411 perm/sec)   p_kst 1.036842e-03   p_cons 3.865526e-01   p_joint 3.994737e-03

Joint ci ratio: 1.391029e-01	ci left: 3.679812e-03	ci right 4.234717e-03	k: 790	n:200000
Cons ci ratio: 1.104017e-02	ci left: 3.844999e-01	ci right 3.887734e-01	k: 77327	n:200000
KS ci ratio: 2.723171e-01	ci left: 8.941986e-04	ci right 1.180580e-03	k: 206	n:200000
CASD1   200000 perm   59 sec   (3370 perm/sec)   p_kst 1.030000e-03   p_cons 3.866350e-01   p_joint 3.950000e-03

Joint ci ratio: 1.365409e-01	ci left: 3.642510e-03	ci right 4.180850e-03	k: 820	n:210000
Cons ci ratio: 1.077642e-02	ci left: 3.844498e-01	ci right 3.886200e-01	k: 81172	n:210000
KS ci ratio: 2.641472e-01	ci left: 9.093616e-04	ci right 1.190418e-03	k: 219	n:210000
CASD1   210000 perm   63 sec   (3329 perm/sec)   p_kst 1.042857e-03   p_cons 3.865333e-01   p_joint 3.904762e-03

Joint ci ratio: 1.339575e-01	ci left: 3.617471e-03	ci right 4.141189e-03	k: 852	n:220000
Cons ci ratio: 1.052788e-02	ci left: 3.845326e-01	ci right 3.886068e-01	k: 85045	n:220000
KS ci ratio: 2.594732e-01	ci left: 9.020039e-04	ci right 1.175053e-03	k: 227	n:220000
CASD1   220000 perm   67 sec   (3280 perm/sec)   p_kst 1.031818e-03   p_cons 3.865682e-01   p_joint 3.872727e-03

Joint ci ratio: 1.315900e-01	ci left: 3.590492e-03	ci right 4.100398e-03	k: 883	n:230000
Cons ci ratio: 1.030683e-02	ci left: 3.841009e-01	ci right 3.880846e-01	k: 88801	n:230000
KS ci ratio: 2.550388e-01	ci left: 8.953260e-04	ci right 1.160985e-03	k: 235	n:230000
CASD1   230000 perm   72 sec   (3215 perm/sec)   p_kst 1.021739e-03   p_cons 3.860913e-01   p_joint 3.839130e-03

Joint ci ratio: 1.296999e-01	ci left: 3.545675e-03	ci right 4.041427e-03	k: 909	n:240000
Cons ci ratio: 1.008893e-02	ci left: 3.841848e-01	ci right 3.880846e-01	k: 92672	n:240000
KS ci ratio: 2.513403e-01	ci left: 8.853361e-04	ci right 1.143625e-03	k: 242	n:240000
CASD1   240000 perm   78 sec   (3074 perm/sec)   p_kst 1.008333e-03   p_cons 3.861333e-01   p_joint 3.787500e-03

Joint ci ratio: 1.356749e-01	ci left: 3.102151e-03	ci right 3.557484e-03	k: 831	n:250000
Cons ci ratio: 9.879374e-03	ci left: 3.844986e-01	ci right 3.883200e-01	k: 96602	n:250000
KS ci ratio: 2.473035e-01	ci left: 8.799231e-04	ci right 1.131876e-03	k: 250	n:250000
CASD1   250000 perm   85 sec   (2932 perm/sec)   p_kst 1.000000e-03   p_cons 3.864080e-01   p_joint 3.324000e-03

Joint ci ratio: 1.347927e-01	ci left: 3.023705e-03	ci right 3.464406e-03	k: 842	n:260000
Cons ci ratio: 9.686746e-03	ci left: 3.845738e-01	ci right 3.883210e-01	k: 100476	n:260000
KS ci ratio: 2.429860e-01	ci left: 8.785690e-04	ci right 1.125080e-03	k: 259	n:260000
CASD1   260000 perm   89 sec   (2909 perm/sec)   p_kst 9.961538e-04   p_cons 3.864462e-01   p_joint 3.238462e-03

Joint ci ratio: 1.386482e-01	ci left: 2.747145e-03	ci right 3.159935e-03	k: 796	n:270000
Cons ci ratio: 9.502218e-03	ci left: 3.847810e-01	ci right 3.884584e-01	k: 104387	n:270000
KS ci ratio: 2.402318e-01	ci left: 8.669057e-04	ci right 1.106976e-03	k: 265	n:270000
CASD1   270000 perm   97 sec   (2786 perm/sec)   p_kst 9.814815e-04   p_cons 3.866185e-01   p_joint 2.948148e-03

Joint ci ratio: 1.357811e-01	ci left: 2.766295e-03	ci right 3.172673e-03	k: 830	n:280000
Cons ci ratio: 9.327286e-03	ci left: 3.850026e-01	ci right 3.886140e-01	k: 108306	n:280000
KS ci ratio: 2.362684e-01	ci left: 8.661690e-04	ci right 1.101500e-03	k: 274	n:280000
CASD1   280000 perm   101 sec   (2762 perm/sec)   p_kst 9.785714e-04   p_cons 3.868071e-01   p_joint 2.964286e-03

Joint ci ratio: 1.340993e-01	ci left: 2.740872e-03	ci right 3.138130e-03	k: 851	n:290000
Cons ci ratio: 9.167266e-03	ci left: 3.849201e-01	ci right 3.884684e-01	k: 112141	n:290000
KS ci ratio: 2.316797e-01	ci left: 8.720092e-04	ci right 1.103667e-03	k: 285	n:290000
CASD1   290000 perm   106 sec   (2743 perm/sec)   p_kst 9.827586e-04   p_cons 3.866931e-01   p_joint 2.934483e-03

Joint ci ratio: 1.316493e-01	ci left: 2.752631e-03	ci right 3.143735e-03	k: 883	n:300000
Cons ci ratio: 9.017806e-03	ci left: 3.847070e-01	ci right 3.881952e-01	k: 115935	n:300000
KS ci ratio: 2.265861e-01	ci left: 8.837891e-04	ci right 1.112693e-03	k: 298	n:300000
CASD1   300000 perm   110 sec   (2723 perm/sec)   p_kst 9.933333e-04   p_cons 3.864500e-01   p_joint 2.943333e-03

Joint ci ratio: 1.301868e-01	ci left: 2.726238e-03	ci right 3.108955e-03	k: 903	n:310000
Cons ci ratio: 8.872344e-03	ci left: 3.846725e-01	ci right 3.881038e-01	k: 119780	n:310000
KS ci ratio: 2.228895e-01	ci left: 8.857221e-04	ci right 1.110871e-03	k: 308	n:310000
CASD1   310000 perm   115 sec   (2702 perm/sec)   p_kst 9.935484e-04   p_cons 3.863871e-01   p_joint 2.912903e-03

Joint ci ratio: 1.281476e-01	ci left: 2.728739e-03	ci right 3.105352e-03	k: 932	n:320000
Cons ci ratio: 8.728006e-03	ci left: 3.849497e-01	ci right 3.883273e-01	k: 123724	n:320000
KS ci ratio: 2.197131e-01	ci left: 8.846094e-04	ci right 1.105838e-03	k: 317	n:320000
CASD1   320000 perm   119 sec   (2683 perm/sec)   p_kst 9.906250e-04   p_cons 3.866375e-01   p_joint 2.912500e-03

Joint ci ratio: 1.315924e-01	ci left: 2.505302e-03	ci right 2.861097e-03	k: 884	n:330000
Cons ci ratio: 8.588621e-03	ci left: 3.853135e-01	ci right 3.886400e-01	k: 127702	n:330000
KS ci ratio: 2.153543e-01	ci left: 8.950514e-04	ci right 1.113864e-03	k: 330	n:330000
CASD1   330000 perm   124 sec   (2660 perm/sec)   p_kst 1.000000e-03   p_cons 3.869758e-01   p_joint 2.678788e-03

Joint ci ratio: 1.305662e-01	ci left: 2.471440e-03	ci right 2.819476e-03	k: 898	n:340000
Cons ci ratio: 8.458689e-03	ci left: 3.854887e-01	ci right 3.887662e-01	k: 131623	n:340000
KS ci ratio: 2.112450e-01	ci left: 9.049198e-04	ci right 1.121377e-03	k: 343	n:340000
CASD1   340000 perm   129 sec   (2639 perm/sec)   p_kst 1.008824e-03   p_cons 3.871265e-01   p_joint 2.641176e-03

Joint ci ratio: 1.324301e-01	ci left: 2.331737e-03	ci right 2.665157e-03	k: 873	n:350000
Cons ci ratio: 8.337241e-03	ci left: 3.854972e-01	ci right 3.887275e-01	k: 135489	n:350000
KS ci ratio: 2.085350e-01	ci left: 9.034276e-04	ci right 1.116402e-03	k: 352	n:350000
CASD1   350000 perm   134 sec   (2616 perm/sec)   p_kst 1.005714e-03   p_cons 3.871114e-01   p_joint 2.494286e-03

Joint ci ratio: 1.325108e-01	ci left: 2.264276e-03	ci right 2.588261e-03	k: 872	n:360000
Cons ci ratio: 8.221263e-03	ci left: 3.854834e-01	ci right 3.886684e-01	k: 139347	n:360000
KS ci ratio: 2.017843e-01	ci left: 9.415769e-04	ci right 1.155474e-03	k: 376	n:360000
CASD1   360000 perm   139 sec   (2595 perm/sec)   p_kst 1.044444e-03   p_cons 3.870750e-01   p_joint 2.422222e-03

Joint ci ratio: 1.340633e-01	ci left: 2.150819e-03	ci right 2.462463e-03	k: 852	n:370000
Cons ci ratio: 8.108885e-03	ci left: 3.855355e-01	ci right 3.886771e-01	k: 143229	n:370000
KS ci ratio: 1.976325e-01	ci left: 9.572108e-04	ci right 1.169647e-03	k: 392	n:370000
CASD1   370000 perm   144 sec   (2575 perm/sec)   p_kst 1.059459e-03   p_cons 3.871054e-01   p_joint 2.302703e-03

Joint ci ratio: 1.373331e-01	ci left: 1.992517e-03	ci right 2.288841e-03	k: 812	n:380000
Cons ci ratio: 8.000905e-03	ci left: 3.855903e-01	ci right 3.886904e-01	k: 147113	n:380000
KS ci ratio: 1.942028e-01	ci left: 9.670566e-04	ci right 1.177513e-03	k: 406	n:380000
CASD1   380000 perm   149 sec   (2556 perm/sec)   p_kst 1.068421e-03   p_cons 3.871395e-01   p_joint 2.136842e-03

Joint ci ratio: 1.360846e-01	ci left: 1.978572e-03	ci right 2.269930e-03	k: 827	n:390000
Cons ci ratio: 7.898065e-03	ci left: 3.855862e-01	ci right 3.886462e-01	k: 150975	n:390000
KS ci ratio: 1.909457e-01	ci left: 9.764275e-04	ci right 1.184945e-03	k: 420	n:390000
CASD1   390000 perm   154 sec   (2534 perm/sec)   p_kst 1.076923e-03   p_cons 3.871154e-01   p_joint 2.120513e-03

Joint ci ratio: 1.342327e-01	ci left: 1.984664e-03	ci right 2.272625e-03	k: 850	n:400000
Cons ci ratio: 7.802832e-03	ci left: 3.853553e-01	ci right 3.883764e-01	k: 154746	n:400000
KS ci ratio: 1.876314e-01	ci left: 9.877404e-04	ci right 1.194596e-03	k: 435	n:400000
CASD1   400000 perm   159 sec   (2514 perm/sec)   p_kst 1.087500e-03   p_cons 3.868650e-01   p_joint 2.125000e-03

Joint ci ratio: 1.073540e-01	ci left: 3.067400e-03	ci right 3.417727e-03	k: 1328	n:410000
Cons ci ratio: 7.706798e-03	ci left: 3.853917e-01	ci right 3.883757e-01	k: 158622	n:410000
KS ci ratio: 1.861439e-01	ci left: 9.799232e-04	ci right 1.183331e-03	k: 442	n:410000
CASD1   410000 perm   164 sec   (2494 perm/sec)   p_kst 1.078049e-03   p_cons 3.868829e-01   p_joint 3.239024e-03

Joint ci ratio: 1.060844e-01	ci left: 3.068523e-03	ci right 3.414576e-03	k: 1360	n:420000
Cons ci ratio: 7.616632e-03	ci left: 3.852767e-01	ci right 3.882248e-01	k: 162435	n:420000
KS ci ratio: 1.832699e-01	ci left: 9.883843e-04	ci right 1.190029e-03	k: 456	n:420000
CASD1   420000 perm   170 sec   (2474 perm/sec)   p_kst 1.085714e-03   p_cons 3.867500e-01   p_joint 3.238095e-03

Joint ci ratio: 1.073216e-01	ci left: 2.926982e-03	ci right 3.261165e-03	k: 1329	n:430000
Cons ci ratio: 7.530408e-03	ci left: 3.851139e-01	ci right 3.880272e-01	k: 166225	n:430000
KS ci ratio: 1.816871e-01	ci left: 9.831532e-04	ci right 1.181808e-03	k: 464	n:430000
CASD1   430000 perm   175 sec   (2455 perm/sec)   p_kst 1.079070e-03   p_cons 3.865698e-01   p_joint 3.090698e-03

Joint ci ratio: 1.058197e-01	ci left: 2.944523e-03	ci right 3.275711e-03	k: 1367	n:440000
Cons ci ratio: 7.442514e-03	ci left: 3.852470e-01	ci right 3.881272e-01	k: 170142	n:440000
KS ci ratio: 1.793870e-01	ci left: 9.868492e-04	ci right 1.183452e-03	k: 476	n:440000
CASD1   440000 perm   181 sec   (2435 perm/sec)   p_kst 1.081818e-03   p_cons 3.866864e-01   p_joint 3.106818e-03

Joint ci ratio: 1.050179e-01	ci left: 2.924523e-03	ci right 3.250815e-03	k: 1388	n:450000
Cons ci ratio: 7.358179e-03	ci left: 3.853389e-01	ci right 3.881870e-01	k: 174043	n:450000
KS ci ratio: 1.773536e-01	ci left: 9.882724e-04	ci right 1.182688e-03	k: 487	n:450000
CASD1   450000 perm   186 sec   (2413 perm/sec)   p_kst 1.082222e-03   p_cons 3.867622e-01   p_joint 3.084444e-03

Joint ci ratio: 1.161096e-01	ci left: 2.328189e-03	ci right 2.617265e-03	k: 1136	n:460000
Cons ci ratio: 7.275846e-03	ci left: 3.854791e-01	ci right 3.882962e-01	k: 177968	n:460000
KS ci ratio: 1.750371e-01	ci left: 9.938030e-04	ci right 1.186483e-03	k: 500	n:460000
CASD1   460000 perm   193 sec   (2387 perm/sec)   p_kst 1.086957e-03   p_cons 3.868870e-01   p_joint 2.469565e-03

Joint ci ratio: 1.167317e-01	ci left: 2.253860e-03	ci right 2.535309e-03	k: 1124	n:470000
Cons ci ratio: 7.197701e-03	ci left: 3.855157e-01	ci right 3.883027e-01	k: 181847	n:470000
KS ci ratio: 1.734861e-01	ci left: 9.909719e-04	ci right 1.181222e-03	k: 509	n:470000
CASD1   470000 perm   199 sec   (2365 perm/sec)   p_kst 1.082979e-03   p_cons 3.869085e-01   p_joint 2.391489e-03

Joint ci ratio: 1.156576e-01	ci left: 2.249383e-03	ci right 2.527512e-03	k: 1145	n:480000
Cons ci ratio: 7.120676e-03	ci left: 3.856405e-01	ci right 3.883984e-01	k: 185769	n:480000
KS ci ratio: 1.714802e-01	ci left: 9.942475e-04	ci right 1.182691e-03	k: 521	n:480000
CASD1   480000 perm   205 sec   (2345 perm/sec)   p_kst 1.085417e-03   p_cons 3.870188e-01   p_joint 2.385417e-03

Joint ci ratio: 1.157617e-01	ci left: 2.199510e-03	ci right 2.471734e-03	k: 1143	n:490000
Cons ci ratio: 7.045799e-03	ci left: 3.857787e-01	ci right 3.885084e-01	k: 189700	n:490000
KS ci ratio: 1.703426e-01	ci left: 9.876311e-04	ci right 1.173451e-03	k: 528	n:490000
CASD1   490000 perm   211 sec   (2326 perm/sec)   p_kst 1.077551e-03   p_cons 3.871429e-01   p_joint 2.332653e-03

Joint ci ratio: 1.191528e-01	ci left: 2.031269e-03	ci right 2.290554e-03	k: 1079	n:500000
Cons ci ratio: 6.975616e-03	ci left: 3.857495e-01	ci right 3.884518e-01	k: 193550	n:500000
KS ci ratio: 1.685987e-01	ci left: 9.889454e-04	ci right 1.172914e-03	k: 539	n:500000
CASD1   500000 perm   217 sec   (2307 perm/sec)   p_kst 1.078000e-03   p_cons 3.871000e-01   p_joint 2.158000e-03

Joint ci ratio: 1.180648e-01	ci left: 2.029492e-03	ci right 2.286020e-03	k: 1099	n:510000
Cons ci ratio: 6.908203e-03	ci left: 3.856727e-01	ci right 3.883482e-01	k: 197375	n:510000
KS ci ratio: 1.679788e-01	ci left: 9.770666e-04	ci right 1.158090e-03	k: 543	n:510000
CASD1   510000 perm   223 sec   (2289 perm/sec)   p_kst 1.064706e-03   p_cons 3.870098e-01   p_joint 2.154902e-03

Joint ci ratio: 1.166414e-01	ci left: 2.040863e-03	ci right 2.295503e-03	k: 1126	n:520000
Cons ci ratio: 6.842263e-03	ci left: 3.856297e-01	ci right 3.882792e-01	k: 201216	n:520000
KS ci ratio: 1.661560e-01	ci left: 9.803891e-04	ci right 1.159860e-03	k: 555	n:520000
CASD1   520000 perm   229 sec   (2271 perm/sec)   p_kst 1.067308e-03   p_cons 3.869538e-01   p_joint 2.165385e-03

Joint ci ratio: 1.156707e-01	ci left: 2.037164e-03	ci right 2.289083e-03	k: 1145	n:530000
Cons ci ratio: 6.776693e-03	ci left: 3.856922e-01	ci right 3.883166e-01	k: 205112	n:530000
KS ci ratio: 1.651204e-01	ci left: 9.745510e-04	ci right 1.151730e-03	k: 562	n:530000
CASD1   530000 perm   235 sec   (2254 perm/sec)   p_kst 1.060377e-03   p_cons 3.870038e-01   p_joint 2.160377e-03

Joint ci ratio: 1.179645e-01	ci left: 1.920331e-03	ci right 2.162839e-03	k: 1101	n:540000
Cons ci ratio: 6.711820e-03	ci left: 3.858339e-01	ci right 3.884340e-01	k: 209052	n:540000
KS ci ratio: 1.633881e-01	ci left: 9.778126e-04	ci right 1.153537e-03	k: 574	n:540000
CASD1   540000 perm   241 sec   (2237 perm/sec)   p_kst 1.062963e-03   p_cons 3.871333e-01   p_joint 2.038889e-03

Joint ci ratio: 1.179131e-01	ci left: 1.887178e-03	ci right 2.125389e-03	k: 1102	n:550000
Cons ci ratio: 6.649437e-03	ci left: 3.859232e-01	ci right 3.884998e-01	k: 212966	n:550000
KS ci ratio: 1.618473e-01	ci left: 9.792204e-04	ci right 1.153377e-03	k: 585	n:550000
CASD1   550000 perm   248 sec   (2220 perm/sec)   p_kst 1.063636e-03   p_cons 3.872109e-01   p_joint 2.003636e-03

Joint ci ratio: 1.163405e-01	ci left: 1.905482e-03	ci right 2.142574e-03	k: 1132	n:560000
Cons ci ratio: 6.591638e-03	ci left: 3.858025e-01	ci right 3.883558e-01	k: 216764	n:560000
KS ci ratio: 1.600810e-01	ci left: 9.840137e-04	ci right 1.156929e-03	k: 598	n:560000
CASD1   560000 perm   254 sec   (2204 perm/sec)   p_kst 1.067857e-03   p_cons 3.870786e-01   p_joint 2.021429e-03

Joint ci ratio: 9.138738e-02	ci left: 3.070463e-03	ci right 3.366201e-03	k: 1833	n:570000
Cons ci ratio: 6.533290e-03	ci left: 3.858335e-01	ci right 3.883642e-01	k: 220646	n:570000
KS ci ratio: 1.587614e-01	ci left: 9.835942e-04	ci right 1.154875e-03	k: 608	n:570000
CASD1   570000 perm   261 sec   (2188 perm/sec)   p_kst 1.066667e-03   p_cons 3.870982e-01   p_joint 3.215789e-03

Joint ci ratio: 9.079587e-02	ci left: 3.057960e-03	ci right 3.350485e-03	k: 1857	n:580000
Cons ci ratio: 6.477195e-03	ci left: 3.858100e-01	ci right 3.883187e-01	k: 224497	n:580000
KS ci ratio: 1.576014e-01	ci left: 9.815386e-04	ci right 1.151095e-03	k: 617	n:580000
CASD1   580000 perm   267 sec   (2170 perm/sec)   p_kst 1.063793e-03   p_cons 3.870638e-01   p_joint 3.201724e-03

Joint ci ratio: 9.227987e-02	ci left: 2.908409e-03	ci right 3.191421e-03	k: 1798	n:590000
Cons ci ratio: 6.420937e-03	ci left: 3.859043e-01	ci right 3.883918e-01	k: 228417	n:590000
KS ci ratio: 1.565914e-01	ci left: 9.779285e-04	ci right 1.145677e-03	k: 625	n:590000
CASD1   590000 perm   274 sec   (2154 perm/sec)   p_kst 1.059322e-03   p_cons 3.871475e-01   p_joint 3.047458e-03

Joint ci ratio: 9.154508e-02	ci left: 2.907158e-03	ci right 3.187675e-03	k: 1827	n:600000
Cons ci ratio: 6.368222e-03	ci left: 3.858389e-01	ci right 3.883055e-01	k: 232243	n:600000
KS ci ratio: 1.557237e-01	ci left: 9.728403e-04	ci right 1.138705e-03	k: 632	n:600000
CASD1   600000 perm   281 sec   (2136 perm/sec)   p_kst 1.053333e-03   p_cons 3.870717e-01   p_joint 3.045000e-03

Joint ci ratio: 9.119776e-02	ci left: 2.881924e-03	ci right 3.158895e-03	k: 1841	n:610000
Cons ci ratio: 6.315758e-03	ci left: 3.858528e-01	ci right 3.882991e-01	k: 236116	n:610000
KS ci ratio: 1.539102e-01	ci left: 9.805300e-04	ci right 1.145579e-03	k: 647	n:610000
CASD1   610000 perm   288 sec   (2120 perm/sec)   p_kst 1.060656e-03   p_cons 3.870754e-01   p_joint 3.018033e-03

Joint ci ratio: 9.060984e-02	ci left: 2.873270e-03	ci right 3.147535e-03	k: 1865	n:620000
Cons ci ratio: 6.263463e-03	ci left: 3.859502e-01	ci right 3.883767e-01	k: 240041	n:620000
KS ci ratio: 1.526202e-01	ci left: 9.817765e-04	ci right 1.145524e-03	k: 658	n:620000
CASD1   620000 perm   295 sec   (2104 perm/sec)   p_kst 1.061290e-03   p_cons 3.871629e-01   p_joint 3.008065e-03

Joint ci ratio: 8.958262e-02	ci left: 2.894380e-03	ci right 3.167364e-03	k: 1908	n:630000
Cons ci ratio: 6.213442e-03	ci left: 3.859683e-01	ci right 3.883756e-01	k: 243918	n:630000
KS ci ratio: 1.514753e-01	ci left: 9.814619e-04	ci right 1.143817e-03	k: 668	n:630000
CASD1   630000 perm   302 sec   (2089 perm/sec)   p_kst 1.060317e-03   p_cons 3.871714e-01   p_joint 3.028571e-03

Joint ci ratio: 8.895599e-02	ci left: 2.890401e-03	ci right 3.161003e-03	k: 1935	n:640000
Cons ci ratio: 6.164845e-03	ci left: 3.859673e-01	ci right 3.883556e-01	k: 247783	n:640000
KS ci ratio: 1.501347e-01	ci left: 9.841691e-04	ci right 1.145402e-03	k: 680	n:640000
CASD1   640000 perm   309 sec   (2074 perm/sec)   p_kst 1.062500e-03   p_cons 3.871609e-01   p_joint 3.023438e-03

Joint ci ratio: 9.025308e-02	ci left: 2.763206e-03	ci right 3.025871e-03	k: 1880	n:650000
Cons ci ratio: 6.116261e-03	ci left: 3.860525e-01	ci right 3.884224e-01	k: 251704	n:650000
KS ci ratio: 1.495872e-01	ci left: 9.764316e-04	ci right 1.135761e-03	k: 685	n:650000
CASD1   650000 perm   316 sec   (2059 perm/sec)   p_kst 1.053846e-03   p_cons 3.872369e-01   p_joint 2.892308e-03

Joint ci ratio: 8.958881e-02	ci left: 2.762809e-03	ci right 3.023402e-03	k: 1908	n:660000
Cons ci ratio: 6.072043e-03	ci left: 3.858822e-01	ci right 3.882339e-01	k: 255458	n:660000
KS ci ratio: 1.484021e-01	ci left: 9.776826e-04	ci right 1.135840e-03	k: 696	n:660000
CASD1   660000 perm   323 sec   (2043 perm/sec)   p_kst 1.054545e-03   p_cons 3.870576e-01   p_joint 2.890909e-03

Joint ci ratio: 8.907747e-02	ci left: 2.753675e-03	ci right 3.011847e-03	k: 1930	n:670000
Cons ci ratio: 6.025452e-03	ci left: 3.859782e-01	ci right 3.883124e-01	k: 259387	n:670000
KS ci ratio: 1.477679e-01	ci left: 9.717135e-04	ci right 1.128175e-03	k: 702	n:670000
CASD1   670000 perm   330 sec   (2028 perm/sec)   p_kst 1.047761e-03   p_cons 3.871448e-01   p_joint 2.880597e-03

Joint ci ratio: 8.887191e-02	ci left: 2.726119e-03	ci right 2.981087e-03	k: 1939	n:680000
Cons ci ratio: 5.982549e-03	ci left: 3.858627e-01	ci right 3.881795e-01	k: 263174	n:680000
KS ci ratio: 1.468312e-01	ci left: 9.701710e-04	ci right 1.125307e-03	k: 711	n:680000
CASD1   680000 perm   338 sec   (2014 perm/sec)   p_kst 1.045588e-03   p_cons 3.870206e-01   p_joint 2.851471e-03

Joint ci ratio: 9.204420e-02	ci left: 2.501035e-03	ci right 2.743750e-03	k: 1808	n:690000
Cons ci ratio: 5.937737e-03	ci left: 3.859751e-01	ci right 3.882751e-01	k: 267116	n:690000
KS ci ratio: 1.458108e-01	ci left: 9.700727e-04	ci right 1.124021e-03	k: 721	n:690000
CASD1   690000 perm   345 sec   (1998 perm/sec)   p_kst 1.044928e-03   p_cons 3.871246e-01   p_joint 2.620290e-03

Joint ci ratio: 9.143978e-02	ci left: 2.498805e-03	ci right 2.739626e-03	k: 1832	n:700000
Cons ci ratio: 5.895283e-03	ci left: 3.859744e-01	ci right 3.882580e-01	k: 270981	n:700000
KS ci ratio: 1.450099e-01	ci left: 9.672272e-04	ci right 1.119808e-03	k: 729	n:700000
CASD1   700000 perm   353 sec   (1984 perm/sec)   p_kst 1.041429e-03   p_cons 3.871157e-01   p_joint 2.617143e-03

Joint ci ratio: 9.092077e-02	ci left: 2.492513e-03	ci right 2.731292e-03	k: 1853	n:710000
Cons ci ratio: 5.853136e-03	ci left: 3.860217e-01	ci right 3.882891e-01	k: 274880	n:710000
KS ci ratio: 1.442221e-01	ci left: 9.644641e-04	ci right 1.115711e-03	k: 737	n:710000
CASD1   710000 perm   360 sec   (1970 perm/sec)   p_kst 1.038028e-03   p_cons 3.871549e-01   p_joint 2.609859e-03

Joint ci ratio: 9.151823e-02	ci left: 2.425318e-03	ci right 2.659268e-03	k: 1829	n:720000
Cons ci ratio: 5.813072e-03	ci left: 3.859705e-01	ci right 3.882221e-01	k: 278709	n:720000
KS ci ratio: 1.432548e-01	ci left: 9.644582e-04	ci right 1.114603e-03	k: 747	n:720000
CASD1   720000 perm   368 sec   (1956 perm/sec)   p_kst 1.037500e-03   p_cons 3.870958e-01   p_joint 2.540278e-03

Joint ci ratio: 9.085038e-02	ci left: 2.428238e-03	ci right 2.660669e-03	k: 1856	n:730000
Cons ci ratio: 5.774152e-03	ci left: 3.858934e-01	ci right 3.881294e-01	k: 282518	n:730000
KS ci ratio: 1.422129e-01	ci left: 9.657768e-04	ci right 1.114940e-03	k: 758	n:730000
CASD1   730000 perm   376 sec   (1943 perm/sec)   p_kst 1.038356e-03   p_cons 3.870110e-01   p_joint 2.542466e-03

Joint ci ratio: 9.622084e-02	ci left: 2.130135e-03	ci right 2.346764e-03	k: 1655	n:740000
Cons ci ratio: 5.734190e-03	ci left: 3.859684e-01	ci right 3.881893e-01	k: 286438	n:740000
KS ci ratio: 1.411934e-01	ci left: 9.670637e-04	ci right 1.115265e-03	k: 769	n:740000
CASD1   740000 perm   384 sec   (1929 perm/sec)   p_kst 1.039189e-03   p_cons 3.870784e-01   p_joint 2.236486e-03

Joint ci ratio: 9.792602e-02	ci left: 2.027572e-03	ci right 2.237636e-03	k: 1598	n:750000
Cons ci ratio: 5.696599e-03	ci left: 3.859121e-01	ci right 3.881181e-01	k: 290261	n:750000
KS ci ratio: 1.405563e-01	ci left: 9.631738e-04	ci right 1.110057e-03	k: 776	n:750000
CASD1   750000 perm   392 sec   (1914 perm/sec)   p_kst 1.034667e-03   p_cons 3.870147e-01   p_joint 2.130667e-03

Joint ci ratio: 9.917834e-02	ci left: 1.949556e-03	ci right 2.154269e-03	k: 1558	n:760000
Cons ci ratio: 5.659031e-03	ci left: 3.859166e-01	ci right 3.881080e-01	k: 294129	n:760000
KS ci ratio: 1.394831e-01	ci left: 9.657369e-04	ci right 1.111793e-03	k: 788	n:760000
CASD1   760000 perm   400 sec   (1901 perm/sec)   p_kst 1.036842e-03   p_cons 3.870118e-01   p_joint 2.050000e-03

Joint ci ratio: 9.898897e-02	ci left: 1.931835e-03	ci right 2.134278e-03	k: 1564	n:770000
Cons ci ratio: 5.623212e-03	ci left: 3.858353e-01	ci right 3.880123e-01	k: 297931	n:770000
KS ci ratio: 1.390438e-01	ci left: 9.594619e-04	ci right 1.104074e-03	k: 793	n:770000
CASD1   770000 perm   408 sec   (1888 perm/sec)   p_kst 1.029870e-03   p_cons 3.869234e-01   p_joint 2.031169e-03

Joint ci ratio: 9.845589e-02	ci left: 1.928324e-03	ci right 2.129249e-03	k: 1581	n:780000
Cons ci ratio: 5.587658e-03	ci left: 3.857907e-01	ci right 3.879537e-01	k: 301760	n:780000
KS ci ratio: 1.375782e-01	ci left: 9.682021e-04	ci right 1.112468e-03	k: 810	n:780000
CASD1   780000 perm   416 sec   (1875 perm/sec)   p_kst 1.038462e-03   p_cons 3.868718e-01   p_joint 2.026923e-03

Joint ci ratio: 9.976093e-02	ci left: 1.853299e-03	ci right 2.049116e-03	k: 1540	n:790000
Cons ci ratio: 5.552635e-03	ci left: 3.857587e-01	ci right 3.879079e-01	k: 305598	n:790000
KS ci ratio: 1.370724e-01	ci left: 9.632802e-04	ci right 1.106242e-03	k: 816	n:790000
CASD1   790000 perm   424 sec   (1862 perm/sec)   p_kst 1.032911e-03   p_cons 3.868329e-01   p_joint 1.949367e-03

Joint ci ratio: 9.989213e-02	ci left: 1.825257e-03	ci right 2.018378e-03	k: 1536	n:800000
Cons ci ratio: 5.517100e-03	ci left: 3.858275e-01	ci right 3.879633e-01	k: 309516	n:800000
KS ci ratio: 1.361588e-01	ci left: 9.645193e-04	ci right 1.106633e-03	k: 827	n:800000
CASD1   800000 perm   432 sec   (1850 perm/sec)   p_kst 1.033750e-03   p_cons 3.868950e-01   p_joint 1.920000e-03

Joint ci ratio: 1.006840e-01	ci left: 1.773834e-03	ci right 1.963090e-03	k: 1512	n:810000
Cons ci ratio: 5.481953e-03	ci left: 3.859193e-01	ci right 3.880420e-01	k: 313454	n:810000
KS ci ratio: 1.355872e-01	ci left: 9.609597e-04	ci right 1.101907e-03	k: 834	n:810000
CASD1   810000 perm   441 sec   (1838 perm/sec)   p_kst 1.029630e-03   p_cons 3.869802e-01   p_joint 1.866667e-03

Joint ci ratio: 1.036074e-01	ci left: 1.652374e-03	ci right 1.834102e-03	k: 1428	n:820000
Cons ci ratio: 5.447217e-03	ci left: 3.860309e-01	ci right 3.881406e-01	k: 317410	n:820000
KS ci ratio: 1.346231e-01	ci left: 9.633803e-04	ci right 1.103598e-03	k: 846	n:820000
CASD1   820000 perm   449 sec   (1826 perm/sec)   p_kst 1.031707e-03   p_cons 3.870854e-01   p_joint 1.741463e-03

Joint ci ratio: 1.042314e-01	ci left: 1.612514e-03	ci right 1.790992e-03	k: 1411	n:830000
Cons ci ratio: 5.414480e-03	ci left: 3.860218e-01	ci right 3.881187e-01	k: 321268	n:830000
KS ci ratio: 1.336015e-01	ci left: 9.669106e-04	ci right 1.106489e-03	k: 859	n:830000
CASD1   830000 perm   457 sec   (1815 perm/sec)   p_kst 1.034940e-03   p_cons 3.870699e-01   p_joint 1.700000e-03

Joint ci ratio: 1.034646e-01	ci left: 1.617669e-03	ci right 1.795320e-03	k: 1432	n:840000
Cons ci ratio: 5.382272e-03	ci left: 3.860177e-01	ci right 3.881021e-01	k: 325130	n:840000
KS ci ratio: 1.323754e-01	ci left: 9.738139e-04	ci right 1.112997e-03	k: 875	n:840000
CASD1   840000 perm   466 sec   (1803 perm/sec)   p_kst 1.041667e-03   p_cons 3.870595e-01   p_joint 1.704762e-03

Joint ci ratio: 1.031776e-01	ci left: 1.607805e-03	ci right 1.783854e-03	k: 1440	n:850000
Cons ci ratio: 5.350447e-03	ci left: 3.860302e-01	ci right 3.881023e-01	k: 329006	n:850000
KS ci ratio: 1.316262e-01	ci left: 9.737334e-04	ci right 1.112056e-03	k: 885	n:850000
CASD1   850000 perm   474 sec   (1792 perm/sec)   p_kst 1.041176e-03   p_cons 3.870659e-01   p_joint 1.694118e-03

Joint ci ratio: 1.023986e-01	ci left: 1.614034e-03	ci right 1.789350e-03	k: 1462	n:860000
Cons ci ratio: 5.318058e-03	ci left: 3.861424e-01	ci right 3.882025e-01	k: 332968	n:860000
KS ci ratio: 1.305256e-01	ci left: 9.792811e-04	ci right 1.117138e-03	k: 900	n:860000
CASD1   860000 perm   483 sec   (1780 perm/sec)   p_kst 1.046512e-03   p_cons 3.871721e-01   p_joint 1.700000e-03

Joint ci ratio: 1.018778e-01	ci left: 1.612283e-03	ci right 1.786464e-03	k: 1477	n:870000
Cons ci ratio: 5.288402e-03	ci left: 3.860591e-01	ci right 3.881072e-01	k: 336762	n:870000
KS ci ratio: 1.299502e-01	ci left: 9.769207e-04	ci right 1.113793e-03	k: 908	n:870000
CASD1   870000 perm   492 sec   (1769 perm/sec)   p_kst 1.043678e-03   p_cons 3.870828e-01   p_joint 1.697701e-03

Joint ci ratio: 1.012969e-01	ci left: 1.612789e-03	ci right 1.785972e-03	k: 1494	n:880000
Cons ci ratio: 5.257738e-03	ci left: 3.861128e-01	ci right 3.881493e-01	k: 340675	n:880000
KS ci ratio: 1.295237e-01	ci left: 9.724161e-04	ci right 1.108175e-03	k: 914	n:880000
CASD1   880000 perm   501 sec   (1758 perm/sec)   p_kst 1.038636e-03   p_cons 3.871307e-01   p_joint 1.697727e-03

Joint ci ratio: 1.018107e-01	ci left: 1.578240e-03	ci right 1.748625e-03	k: 1479	n:890000
Cons ci ratio: 5.229408e-03	ci left: 3.860014e-01	ci right 3.880263e-01	k: 344442	n:890000
KS ci ratio: 1.287521e-01	ci left: 9.734504e-04	ci right 1.108483e-03	k: 925	n:890000
CASD1   890000 perm   509 sec   (1747 perm/sec)   p_kst 1.039326e-03   p_cons 3.870135e-01   p_joint 1.661798e-03

Joint ci ratio: 1.016398e-01	ci left: 1.566118e-03	ci right 1.734893e-03	k: 1484	n:900000
Cons ci ratio: 5.199935e-03	ci left: 3.860380e-01	ci right 3.880516e-01	k: 348340	n:900000
KS ci ratio: 1.282684e-01	ci left: 9.701619e-04	ci right 1.104194e-03	k: 932	n:900000
CASD1   900000 perm   518 sec   (1736 perm/sec)   p_kst 1.035556e-03   p_cons 3.870444e-01   p_joint 1.648889e-03

Joint ci ratio: 1.014357e-01	ci left: 1.555333e-03	ci right 1.722590e-03	k: 1490	n:910000
Cons ci ratio: 5.170548e-03	ci left: 3.861111e-01	ci right 3.881138e-01	k: 352272	n:910000
KS ci ratio: 1.275189e-01	ci left: 9.712020e-04	ci right 1.104534e-03	k: 943	n:910000
CASD1   910000 perm   528 sec   (1725 perm/sec)   p_kst 1.036264e-03   p_cons 3.871121e-01   p_joint 1.637363e-03

Joint ci ratio: 1.007954e-01	ci left: 1.558558e-03	ci right 1.725040e-03	k: 1509	n:920000
Cons ci ratio: 5.143055e-03	ci left: 3.860534e-01	ci right 3.880451e-01	k: 356085	n:920000
KS ci ratio: 1.268488e-01	ci left: 9.711692e-04	ci right 1.103744e-03	k: 953	n:920000
CASD1   920000 perm   537 sec   (1714 perm/sec)   p_kst 1.035870e-03   p_cons 3.870489e-01   p_joint 1.640217e-03

Joint ci ratio: 1.001999e-01	ci left: 1.560667e-03	ci right 1.726332e-03	k: 1527	n:930000
Cons ci ratio: 5.115521e-03	ci left: 3.860411e-01	ci right 3.880220e-01	k: 359939	n:930000
KS ci ratio: 1.260583e-01	ci left: 9.732216e-04	ci right 1.105187e-03	k: 965	n:930000
CASD1   930000 perm   546 sec   (1702 perm/sec)   p_kst 1.037634e-03   p_cons 3.870312e-01   p_joint 1.641935e-03

Joint ci ratio: 9.977649e-02	ci left: 1.557548e-03	ci right 1.722143e-03	k: 1540	n:940000
Cons ci ratio: 5.088390e-03	ci left: 3.860322e-01	ci right 3.880025e-01	k: 363796	n:940000
KS ci ratio: 1.254109e-01	ci left: 9.731719e-04	ci right 1.104402e-03	k: 975	n:940000
CASD1   940000 perm   556 sec   (1692 perm/sec)   p_kst 1.037234e-03   p_cons 3.870170e-01   p_joint 1.638298e-03

Joint ci ratio: 9.923062e-02	ci left: 1.558602e-03	ci right 1.722355e-03	k: 1557	n:950000
Cons ci ratio: 5.060844e-03	ci left: 3.861025e-01	ci right 3.880624e-01	k: 367728	n:950000
KS ci ratio: 1.241448e-01	ci left: 9.833238e-04	ci right 1.114486e-03	k: 995	n:950000
CASD1   950000 perm   565 sec   (1681 perm/sec)   p_kst 1.047368e-03   p_cons 3.870821e-01   p_joint 1.638947e-03

Joint ci ratio: 9.891402e-02	ci left: 1.552525e-03	ci right 1.715089e-03	k: 1567	n:960000
Cons ci ratio: 5.035531e-03	ci left: 3.860026e-01	ci right 3.879522e-01	k: 371498	n:960000
KS ci ratio: 1.235262e-01	ci left: 9.831748e-04	ci right 1.113616e-03	k: 1005	n:960000
CASD1   960000 perm   575 sec   (1671 perm/sec)   p_kst 1.046875e-03   p_cons 3.869771e-01   p_joint 1.632292e-03

Joint ci ratio: 9.882021e-02	ci left: 1.539536e-03	ci right 1.700577e-03	k: 1570	n:970000
Cons ci ratio: 5.010169e-03	ci left: 3.859450e-01	ci right 3.878845e-01	k: 375307	n:970000
KS ci ratio: 1.229169e-01	ci left: 9.830305e-04	ci right 1.112762e-03	k: 1015	n:970000
CASD1   970000 perm   584 sec   (1661 perm/sec)   p_kst 1.046392e-03   p_cons 3.869144e-01   p_joint 1.618557e-03

Joint ci ratio: 9.878954e-02	ci left: 1.524821e-03	ci right 1.684271e-03	k: 1571	n:980000
Cons ci ratio: 4.983868e-03	ci left: 3.860141e-01	ci right 3.879437e-01	k: 379239	n:980000
KS ci ratio: 1.220784e-01	ci left: 9.868477e-04	ci right 1.116130e-03	k: 1029	n:980000
CASD1   980000 perm   594 sec   (1650 perm/sec)   p_kst 1.050000e-03   p_cons 3.869786e-01   p_joint 1.603061e-03

Joint ci ratio: 9.850831e-02	ci left: 1.518285e-03	ci right 1.676573e-03	k: 1580	n:990000
Cons ci ratio: 4.958662e-03	ci left: 3.860162e-01	ci right 3.879360e-01	k: 383106	n:990000
KS ci ratio: 1.216072e-01	ci left: 9.847140e-04	ci right 1.113183e-03	k: 1037	n:990000
CASD1   990000 perm   604 sec   (1639 perm/sec)   p_kst 1.047475e-03   p_cons 3.869758e-01   p_joint 1.595960e-03

Joint ci ratio: 9.145081e-02	ci left: 1.750110e-03	ci right 1.918797e-03	k: 1833	n:1000000
Cons ci ratio: 4.933690e-03	ci left: 3.860322e-01	ci right 3.879424e-01	k: 386987	n:1000000
KS ci ratio: 1.208526e-01	ci left: 9.874727e-04	ci right 1.115446e-03	k: 1050	n:1000000
CASD1   1000000 perm   614 sec   (1629 perm/sec)   p_kst 1.050000e-03   p_cons 3.869870e-01   p_joint 1.833000e-03

Joint ci ratio: 9.162699e-02	ci left: 1.726009e-03	ci right 1.892710e-03	k: 1826	n:1010000
Cons ci ratio: 4.908559e-03	ci left: 3.860994e-01	ci right 3.880002e-01	k: 390920	n:1010000
KS ci ratio: 1.200555e-01	ci left: 9.911396e-04	ci right 1.118680e-03	k: 1064	n:1010000
CASD1   1010000 perm   624 sec   (1619 perm/sec)   p_kst 1.053465e-03   p_cons 3.870495e-01   p_joint 1.807921e-03

Joint ci ratio: 9.145246e-02	ci left: 1.715793e-03	ci right 1.881175e-03	k: 1833	n:1020000
Cons ci ratio: 4.884110e-03	ci left: 3.861359e-01	ci right 3.880274e-01	k: 394823	n:1020000
KS ci ratio: 1.194958e-01	ci left: 9.909327e-04	ci right 1.117810e-03	k: 1074	n:1020000
CASD1   1020000 perm   634 sec   (1608 perm/sec)   p_kst 1.052941e-03   p_cons 3.870814e-01   p_joint 1.797059e-03

Joint ci ratio: 9.105622e-02	ci left: 1.714314e-03	ci right 1.878799e-03	k: 1849	n:1030000
Cons ci ratio: 4.860759e-03	ci left: 3.861000e-01	ci right 3.879822e-01	k: 398652	n:1030000
KS ci ratio: 1.189439e-01	ci left: 9.907312e-04	ci right 1.116956e-03	k: 1084	n:1030000
CASD1   1030000 perm   644 sec   (1598 perm/sec)   p_kst 1.052427e-03   p_cons 3.870408e-01   p_joint 1.795146e-03

Joint ci ratio: 9.254731e-02	ci left: 1.642399e-03	ci right 1.802704e-03	k: 1790	n:1040000
Cons ci ratio: 4.837308e-03	ci left: 3.861070e-01	ci right 3.879802e-01	k: 402525	n:1040000
KS ci ratio: 1.183995e-01	ci left: 9.905349e-04	ci right 1.116117e-03	k: 1094	n:1040000
CASD1   1040000 perm   654 sec   (1589 perm/sec)   p_kst 1.051923e-03   p_cons 3.870433e-01   p_joint 1.721154e-03

Joint ci ratio: 9.206020e-02	ci left: 1.644435e-03	ci right 1.804049e-03	k: 1809	n:1050000
Cons ci ratio: 4.814222e-03	ci left: 3.861111e-01	ci right 3.879753e-01	k: 406395	n:1050000
KS ci ratio: 1.179160e-01	ci left: 9.894193e-04	ci right 1.114312e-03	k: 1103	n:1050000
CASD1   1050000 perm   665 sec   (1580 perm/sec)   p_kst 1.050476e-03   p_cons 3.870429e-01   p_joint 1.722857e-03

Joint ci ratio: 9.168119e-02	ci left: 1.642747e-03	ci right 1.801505e-03	k: 1824	n:1060000
Cons ci ratio: 4.791778e-03	ci left: 3.860839e-01	ci right 3.879393e-01	k: 410232	n:1060000
KS ci ratio: 1.174913e-01	ci left: 9.874101e-04	ci right 1.111569e-03	k: 1111	n:1060000
CASD1   1060000 perm   675 sec   (1570 perm/sec)   p_kst 1.048113e-03   p_cons 3.870113e-01   p_joint 1.720755e-03

Joint ci ratio: 9.128198e-02	ci left: 1.642005e-03	ci right 1.799964e-03	k: 1840	n:1070000
Cons ci ratio: 4.769551e-03	ci left: 3.860667e-01	ci right 3.879134e-01	k: 414079	n:1070000
KS ci ratio: 1.171758e-01	ci left: 9.836247e-04	ci right 1.106952e-03	k: 1117	n:1070000
CASD1   1070000 perm   685 sec   (1561 perm/sec)   p_kst 1.043925e-03   p_cons 3.869897e-01   p_joint 1.719626e-03

Joint ci ratio: 9.083894e-02	ci left: 1.643089e-03	ci right 1.800344e-03	k: 1858	n:1080000
Cons ci ratio: 4.747807e-03	ci left: 3.860322e-01	ci right 3.878703e-01	k: 417907	n:1080000
KS ci ratio: 1.167589e-01	ci left: 9.817077e-04	ci right 1.104327e-03	k: 1125	n:1080000
CASD1   1080000 perm   696 sec   (1552 perm/sec)   p_kst 1.041667e-03   p_cons 3.869509e-01   p_joint 1.720370e-03

Joint ci ratio: 7.628736e-02	ci left: 2.324306e-03	ci right 2.509546e-03	k: 2633	n:1090000
Cons ci ratio: 4.725837e-03	ci left: 3.860506e-01	ci right 3.878802e-01	k: 421792	n:1090000
KS ci ratio: 1.160396e-01	ci left: 9.851714e-04	ci right 1.107413e-03	k: 1139	n:1090000
CASD1   1090000 perm   706 sec   (1543 perm/sec)   p_kst 1.044954e-03   p_cons 3.869651e-01   p_joint 2.415596e-03

Joint ci ratio: 7.594218e-02	ci left: 2.324579e-03	ci right 2.508965e-03	k: 2657	n:1100000
Cons ci ratio: 4.704403e-03	ci left: 3.860451e-01	ci right 3.878664e-01	k: 425651	n:1100000
KS ci ratio: 1.157357e-01	ci left: 9.815116e-04	ci right 1.102958e-03	k: 1145	n:1100000
CASD1   1100000 perm   717 sec   (1534 perm/sec)   p_kst 1.040909e-03   p_cons 3.869555e-01   p_joint 2.415455e-03

Joint ci ratio: 7.588579e-02	ci left: 2.307172e-03	ci right 2.490035e-03	k: 2661	n:1110000
Cons ci ratio: 4.682742e-03	ci left: 3.860920e-01	ci right 3.879050e-01	k: 429568	n:1110000
KS ci ratio: 1.151842e-01	ci left: 9.822929e-04	ci right 1.103218e-03	k: 1156	n:1110000
CASD1   1110000 perm   727 sec   (1526 perm/sec)   p_kst 1.041441e-03   p_cons 3.869982e-01   p_joint 2.397297e-03

Joint ci ratio: 7.571573e-02	ci left: 2.297083e-03	ci right 2.478720e-03	k: 2673	n:1120000
Cons ci ratio: 4.662176e-03	ci left: 3.860568e-01	ci right 3.878617e-01	k: 433394	n:1120000
KS ci ratio: 1.150355e-01	ci left: 9.761237e-04	ci right 1.096124e-03	k: 1159	n:1120000
CASD1   1120000 perm   738 sec   (1518 perm/sec)   p_kst 1.034821e-03   p_cons 3.869589e-01   p_joint 2.386607e-03

Joint ci ratio: 7.554680e-02	ci left: 2.287173e-03	ci right 2.467606e-03	k: 2685	n:1130000
Cons ci ratio: 4.641619e-03	ci left: 3.860487e-01	ci right 3.878456e-01	k: 437250	n:1130000
KS ci ratio: 1.144939e-01	ci left: 9.769406e-04	ci right 1.096437e-03	k: 1170	n:1130000
CASD1   1130000 perm   749 sec   (1509 perm/sec)   p_kst 1.035398e-03   p_cons 3.869469e-01   p_joint 2.376106e-03

Joint ci ratio: 7.529513e-02	ci left: 2.282601e-03	ci right 2.462047e-03	k: 2703	n:1140000
Cons ci ratio: 4.621280e-03	ci left: 3.860461e-01	ci right 3.878351e-01	k: 441112	n:1140000
KS ci ratio: 1.142019e-01	ci left: 9.734834e-04	ci right 1.092233e-03	k: 1176	n:1140000
CASD1   1140000 perm   759 sec   (1501 perm/sec)   p_kst 1.031579e-03   p_cons 3.869404e-01   p_joint 2.371053e-03

Joint ci ratio: 7.524014e-02	ci left: 2.266165e-03	ci right 2.444183e-03	k: 2707	n:1150000
Cons ci ratio: 4.601543e-03	ci left: 3.860088e-01	ci right 3.877900e-01	k: 444934	n:1150000
KS ci ratio: 1.136241e-01	ci left: 9.751559e-04	ci right 1.093467e-03	k: 1188	n:1150000
CASD1   1150000 perm   770 sec   (1493 perm/sec)   p_kst 1.033043e-03   p_cons 3.868991e-01   p_joint 2.353913e-03

Joint ci ratio: 7.497772e-02	ci left: 2.262700e-03	ci right 2.439799e-03	k: 2726	n:1160000
Cons ci ratio: 4.581591e-03	ci left: 3.860204e-01	ci right 3.877939e-01	k: 448812	n:1160000
KS ci ratio: 1.131493e-01	ci left: 9.751256e-04	ci right 1.092906e-03	k: 1198	n:1160000
CASD1   1160000 perm   781 sec   (1485 perm/sec)   p_kst 1.032759e-03   p_cons 3.869069e-01   p_joint 2.350000e-03

Joint ci ratio: 7.597634e-02	ci left: 2.183819e-03	ci right 2.357121e-03	k: 2655	n:1170000
Cons ci ratio: 4.562134e-03	ci left: 3.860071e-01	ci right 3.877730e-01	k: 452661	n:1170000
KS ci ratio: 1.124478e-01	ci left: 9.792501e-04	ci right 1.096747e-03	k: 1213	n:1170000
CASD1   1170000 perm   792 sec   (1477 perm/sec)   p_kst 1.036752e-03   p_cons 3.868897e-01   p_joint 2.269231e-03

Joint ci ratio: 7.566364e-02	ci left: 2.183603e-03	ci right 2.356143e-03	k: 2677	n:1180000
Cons ci ratio: 4.542551e-03	ci left: 3.860330e-01	ci right 3.877913e-01	k: 456556	n:1180000
KS ci ratio: 1.120334e-01	ci left: 9.783643e-04	ci right 1.095293e-03	k: 1222	n:1180000
CASD1   1180000 perm   803 sec   (1469 perm/sec)   p_kst 1.035593e-03   p_cons 3.869119e-01   p_joint 2.268644e-03

Joint ci ratio: 7.534079e-02	ci left: 2.184216e-03	ci right 2.356036e-03	k: 2700	n:1190000
Cons ci ratio: 4.523096e-03	ci left: 3.860710e-01	ci right 3.878220e-01	k: 460466	n:1190000
KS ci ratio: 1.117598e-01	ci left: 9.750436e-04	ci right 1.091273e-03	k: 1228	n:1190000
CASD1   1190000 perm   814 sec   (1461 perm/sec)   p_kst 1.031933e-03   p_cons 3.869462e-01   p_joint 2.268908e-03

Joint ci ratio: 7.528565e-02	ci left: 2.169284e-03	ci right 2.339799e-03	k: 2704	n:1200000
Cons ci ratio: 4.504199e-03	ci left: 3.860759e-01	ci right 3.878196e-01	k: 464337	n:1200000
KS ci ratio: 1.111285e-01	ci left: 9.782598e-04	ci right 1.094170e-03	k: 1242	n:1200000
CASD1   1200000 perm   826 sec   (1454 perm/sec)   p_kst 1.035000e-03   p_cons 3.869475e-01   p_joint 2.253333e-03

Joint ci ratio: 7.496760e-02	ci left: 2.170007e-03	ci right 2.339827e-03	k: 2727	n:1210000
Cons ci ratio: 4.485434e-03	ci left: 3.860915e-01	ci right 3.878280e-01	k: 468221	n:1210000
KS ci ratio: 1.107727e-01	ci left: 9.766030e-04	ci right 1.091922e-03	k: 1250	n:1210000
CASD1   1210000 perm   837 sec   (1446 perm/sec)   p_kst 1.033058e-03   p_cons 3.869595e-01   p_joint 2.253719e-03

Joint ci ratio: 7.532892e-02	ci left: 2.131308e-03	ci right 2.298938e-03	k: 2701	n:1220000
Cons ci ratio: 4.467350e-03	ci left: 3.860594e-01	ci right 3.877887e-01	k: 472047	n:1220000
KS ci ratio: 1.104203e-01	ci left: 9.749740e-04	ci right 1.089711e-03	k: 1258	n:1220000
CASD1   1220000 perm   848 sec   (1439 perm/sec)   p_kst 1.031148e-03   p_cons 3.869238e-01   p_joint 2.213934e-03

Joint ci ratio: 7.499653e-02	ci left: 2.133126e-03	ci right 2.300127e-03	k: 2725	n:1230000
Cons ci ratio: 4.448949e-03	ci left: 3.860847e-01	ci right 3.878069e-01	k: 475943	n:1230000
KS ci ratio: 1.098545e-01	ci left: 9.773254e-04	ci right 1.091712e-03	k: 1271	n:1230000
CASD1   1230000 perm   859 sec   (1431 perm/sec)   p_kst 1.033333e-03   p_cons 3.869455e-01   p_joint 2.215447e-03

Joint ci ratio: 8.159073e-02	ci left: 1.782238e-03	ci right 1.934620e-03	k: 2303	n:1240000
Cons ci ratio: 4.430743e-03	ci left: 3.861128e-01	ci right 3.878281e-01	k: 479843	n:1240000
KS ci ratio: 1.094252e-01	ci left: 9.772871e-04	ci right 1.091193e-03	k: 1281	n:1240000
CASD1   1240000 perm   871 sec   (1424 perm/sec)   p_kst 1.033065e-03   p_cons 3.869702e-01   p_joint 1.857258e-03

Joint ci ratio: 8.132654e-02	ci left: 1.779735e-03	ci right 1.931388e-03	k: 2318	n:1250000
Cons ci ratio: 4.412938e-03	ci left: 3.861212e-01	ci right 3.878297e-01	k: 483719	n:1250000
KS ci ratio: 1.090854e-01	ci left: 9.756939e-04	ci right 1.089038e-03	k: 1289	n:1250000
CASD1   1250000 perm   882 sec   (1416 perm/sec)   p_kst 1.031200e-03   p_cons 3.869752e-01   p_joint 1.854400e-03

Joint ci ratio: 8.096071e-02	ci left: 1.781939e-03	ci right 1.933064e-03	k: 2339	n:1260000
Cons ci ratio: 4.395015e-03	ci left: 3.861653e-01	ci right 3.878670e-01	k: 487640	n:1260000
KS ci ratio: 1.085815e-01	ci left: 9.772149e-04	ci right 1.090178e-03	k: 1301	n:1260000
CASD1   1260000 perm   894 sec   (1409 perm/sec)   p_kst 1.032540e-03   p_cons 3.870159e-01   p_joint 1.856349e-03

Joint ci ratio: 8.054852e-02	ci left: 1.786424e-03	ci right 1.937122e-03	k: 2363	n:1270000
Cons ci ratio: 4.378274e-03	ci left: 3.861040e-01	ci right 3.877989e-01	k: 491428	n:1270000
KS ci ratio: 1.081257e-01	ci left: 9.779470e-04	ci right 1.090490e-03	k: 1312	n:1270000
CASD1   1270000 perm   907 sec   (1400 perm/sec)   p_kst 1.033071e-03   p_cons 3.869512e-01   p_joint 1.860630e-03

Joint ci ratio: 8.032813e-02	ci left: 1.782420e-03	ci right 1.932349e-03	k: 2376	n:1280000
Cons ci ratio: 4.361278e-03	ci left: 3.860921e-01	ci right 3.877803e-01	k: 495278	n:1280000
KS ci ratio: 1.076349e-01	ci left: 9.794289e-04	ci right 1.091599e-03	k: 1324	n:1280000
CASD1   1280000 perm   919 sec   (1393 perm/sec)   p_kst 1.034375e-03   p_cons 3.869359e-01   p_joint 1.856250e-03

Joint ci ratio: 8.110147e-02	ci left: 1.734421e-03	ci right 1.881784e-03	k: 2331	n:1290000
Cons ci ratio: 4.344557e-03	ci left: 3.860718e-01	ci right 3.877535e-01	k: 499117	n:1290000
KS ci ratio: 1.071908e-01	ci left: 9.801345e-04	ci right 1.091893e-03	k: 1335	n:1290000
CASD1   1290000 perm   931 sec   (1386 perm/sec)   p_kst 1.034884e-03   p_cons 3.869124e-01   p_joint 1.806977e-03

Joint ci ratio: 8.075585e-02	ci left: 1.736153e-03	ci right 1.883004e-03	k: 2351	n:1300000
Cons ci ratio: 4.327458e-03	ci left: 3.861142e-01	ci right 3.877894e-01	k: 503037	n:1300000
KS ci ratio: 1.068317e-01	ci left: 9.793327e-04	ci right 1.090602e-03	k: 1344	n:1300000
CASD1   1300000 perm   942 sec   (1380 perm/sec)   p_kst 1.033846e-03   p_cons 3.869515e-01   p_joint 1.808462e-03

Joint ci ratio: 8.077362e-02	ci left: 1.722151e-03	ci right 1.867852e-03	k: 2350	n:1310000
Cons ci ratio: 4.311294e-03	ci left: 3.860750e-01	ci right 3.877438e-01	k: 506851	n:1310000
KS ci ratio: 1.064367e-01	ci left: 9.792869e-04	ci right 1.090114e-03	k: 1354	n:1310000
CASD1   1310000 perm   954 sec   (1373 perm/sec)   p_kst 1.033588e-03   p_cons 3.869092e-01   p_joint 1.793893e-03

Joint ci ratio: 8.099882e-02	ci left: 1.699455e-03	ci right 1.843655e-03	k: 2337	n:1320000
Cons ci ratio: 4.294885e-03	ci left: 3.860834e-01	ci right 3.877459e-01	k: 510727	n:1320000
KS ci ratio: 1.060462e-01	ci left: 9.792425e-04	ci right 1.089632e-03	k: 1364	n:1320000
CASD1   1320000 perm   966 sec   (1366 perm/sec)   p_kst 1.033333e-03   p_cons 3.869144e-01   p_joint 1.770455e-03

Joint ci ratio: 8.063739e-02	ci left: 1.702147e-03	ci right 1.845901e-03	k: 2358	n:1330000
Cons ci ratio: 4.278994e-03	ci left: 3.860549e-01	ci right 3.877110e-01	k: 514554	n:1330000
KS ci ratio: 1.054681e-01	ci left: 9.828598e-04	ci right 1.093016e-03	k: 1379	n:1330000
CASD1   1330000 perm   978 sec   (1359 perm/sec)   p_kst 1.036842e-03   p_cons 3.868827e-01   p_joint 1.772932e-03

Joint ci ratio: 8.043324e-02	ci left: 1.698219e-03	ci right 1.841261e-03	k: 2370	n:1340000
Cons ci ratio: 4.263634e-03	ci left: 3.859872e-01	ci right 3.876372e-01	k: 518328	n:1340000
KS ci ratio: 1.051638e-01	ci left: 9.813379e-04	ci right 1.090986e-03	k: 1387	n:1340000
CASD1   1340000 perm   991 sec   (1352 perm/sec)   p_kst 1.035075e-03   p_cons 3.868119e-01   p_joint 1.768657e-03

Joint ci ratio: 8.033201e-02	ci left: 1.689995e-03	ci right 1.832157e-03	k: 2376	n:1350000
Cons ci ratio: 4.247934e-03	ci left: 3.859769e-01	ci right 3.876207e-01	k: 522178	n:1350000
KS ci ratio: 1.048621e-01	ci left: 9.798389e-04	ci right 1.088987e-03	k: 1395	n:1350000
CASD1   1350000 perm   1003 sec   (1345 perm/sec)   p_kst 1.033333e-03   p_cons 3.867985e-01   p_joint 1.760000e-03

Joint ci ratio: 8.021430e-02	ci left: 1.682612e-03	ci right 1.823935e-03	k: 2383	n:1360000
Cons ci ratio: 4.232268e-03	ci left: 3.859821e-01	ci right 3.876199e-01	k: 526049	n:1360000
KS ci ratio: 1.043771e-01	ci left: 9.819430e-04	ci right 1.090788e-03	k: 1408	n:1360000
CASD1   1360000 perm   1016 sec   (1339 perm/sec)   p_kst 1.035294e-03   p_cons 3.868007e-01   p_joint 1.752206e-03

Joint ci ratio: 7.989651e-02	ci left: 1.683921e-03	ci right 1.824768e-03	k: 2402	n:1370000
Cons ci ratio: 4.217384e-03	ci left: 3.859187e-01	ci right 3.875504e-01	k: 529826	n:1370000
KS ci ratio: 1.039720e-01	ci left: 9.825955e-04	ci right 1.091064e-03	k: 1419	n:1370000
CASD1   1370000 perm   1028 sec   (1332 perm/sec)   p_kst 1.035766e-03   p_cons 3.867343e-01   p_joint 1.753285e-03

Joint ci ratio: 7.964838e-02	ci left: 1.682371e-03	ci right 1.822632e-03	k: 2417	n:1380000
Cons ci ratio: 4.201988e-03	ci left: 3.859315e-01	ci right 3.875573e-01	k: 533707	n:1380000
KS ci ratio: 1.036805e-01	ci left: 9.811218e-04	ci right 1.089106e-03	k: 1427	n:1380000
CASD1   1380000 perm   1041 sec   (1326 perm/sec)   p_kst 1.034058e-03   p_cons 3.867442e-01   p_joint 1.751449e-03

Joint ci ratio: 7.956652e-02	ci left: 1.673793e-03	ci right 1.813188e-03	k: 2422	n:1390000
Cons ci ratio: 4.186322e-03	ci left: 3.859938e-01	ci right 3.876138e-01	k: 537657	n:1390000
KS ci ratio: 1.032116e-01	ci left: 9.831740e-04	ci right 1.090865e-03	k: 1440	n:1390000
CASD1   1390000 perm   1054 sec   (1319 perm/sec)   p_kst 1.035971e-03   p_cons 3.868036e-01   p_joint 1.742446e-03

Joint ci ratio: 7.935405e-02	ci left: 1.670939e-03	ci right 1.809707e-03	k: 2435	n:1400000
Cons ci ratio: 4.171093e-03	ci left: 3.860253e-01	ci right 3.876395e-01	k: 541565	n:1400000
KS ci ratio: 1.029976e-01	ci left: 9.803264e-04	ci right 1.087469e-03	k: 1446	n:1400000
CASD1   1400000 perm   1067 sec   (1313 perm/sec)   p_kst 1.032857e-03   p_cons 3.868321e-01   p_joint 1.739286e-03

Joint ci ratio: 7.993183e-02	ci left: 1.634758e-03	ci right 1.771557e-03	k: 2400	n:1410000
Cons ci ratio: 4.156016e-03	ci left: 3.860577e-01	ci right 3.876662e-01	k: 545475	n:1410000
KS ci ratio: 1.026083e-01	ci left: 9.809746e-04	ci right 1.087759e-03	k: 1457	n:1410000
CASD1   1410000 perm   1079 sec   (1306 perm/sec)   p_kst 1.033333e-03   p_cons 3.868617e-01   p_joint 1.702128e-03

Joint ci ratio: 7.958444e-02	ci left: 1.637740e-03	ci right 1.774165e-03	k: 2421	n:1420000
Cons ci ratio: 4.141268e-03	ci left: 3.860707e-01	ci right 3.876735e-01	k: 549358	n:1420000
KS ci ratio: 1.021191e-01	ci left: 9.836732e-04	ci right 1.090210e-03	k: 1471	n:1420000
CASD1   1420000 perm   1092 sec   (1300 perm/sec)   p_kst 1.035915e-03   p_cons 3.868718e-01   p_joint 1.704930e-03

Joint ci ratio: 7.927405e-02	ci left: 1.639310e-03	ci right 1.775308e-03	k: 2440	n:1430000
Cons ci ratio: 4.126585e-03	ci left: 3.860939e-01	ci right 3.876911e-01	k: 553256	n:1430000
KS ci ratio: 1.017053e-01	ci left: 9.849721e-04	ci right 1.091191e-03	k: 1483	n:1430000
CASD1   1430000 perm   1106 sec   (1293 perm/sec)   p_kst 1.037063e-03   p_cons 3.868923e-01   p_joint 1.706294e-03

Joint ci ratio: 7.901554e-02	ci left: 1.638817e-03	ci right 1.774311e-03	k: 2456	n:1440000
Cons ci ratio: 4.111948e-03	ci left: 3.861294e-01	ci right 3.877211e-01	k: 557172	n:1440000
KS ci ratio: 1.013304e-01	ci left: 9.855770e-04	ci right 1.091446e-03	k: 1494	n:1440000
CASD1   1440000 perm   1119 sec   (1287 perm/sec)   p_kst 1.037500e-03   p_cons 3.869250e-01   p_joint 1.705556e-03

Joint ci ratio: 7.077752e-02	ci left: 2.036303e-03	ci right 2.186387e-03	k: 3060	n:1450000
Cons ci ratio: 4.097943e-03	ci left: 3.861092e-01	ci right 3.876954e-01	k: 561008	n:1450000
KS ci ratio: 1.010268e-01	ci left: 9.848297e-04	ci right 1.090283e-03	k: 1503	n:1450000
CASD1   1450000 perm   1132 sec   (1281 perm/sec)   p_kst 1.036552e-03   p_cons 3.869021e-01   p_joint 2.110345e-03

Joint ci ratio: 7.066246e-02	ci left: 2.029083e-03	ci right 2.178382e-03	k: 3070	n:1460000
Cons ci ratio: 4.083690e-03	ci left: 3.861345e-01	ci right 3.877153e-01	k: 564910	n:1460000
KS ci ratio: 1.006926e-01	ci left: 9.847608e-04	ci right 1.089837e-03	k: 1513	n:1460000
CASD1   1460000 perm   1146 sec   (1274 perm/sec)   p_kst 1.036301e-03   p_cons 3.869247e-01   p_joint 2.102740e-03

Joint ci ratio: 7.042210e-02	ci left: 2.029314e-03	ci right 2.178101e-03	k: 3091	n:1470000
Cons ci ratio: 4.069749e-03	ci left: 3.861404e-01	ci right 3.877158e-01	k: 568784	n:1470000
KS ci ratio: 1.003947e-01	ci left: 9.840302e-04	ci right 1.088700e-03	k: 1522	n:1470000
CASD1   1470000 perm   1159 sec   (1268 perm/sec)   p_kst 1.035374e-03   p_cons 3.869279e-01   p_joint 2.102721e-03

Joint ci ratio: 7.087191e-02	ci left: 1.989715e-03	ci right 2.136569e-03	k: 3052	n:1480000
Cons ci ratio: 4.056030e-03	ci left: 3.861368e-01	ci right 3.877068e-01	k: 572644	n:1480000
KS ci ratio: 1.000994e-01	ci left: 9.833100e-04	ci right 1.087577e-03	k: 1531	n:1480000
CASD1   1480000 perm   1173 sec   (1262 perm/sec)   p_kst 1.034459e-03   p_cons 3.869216e-01   p_joint 2.062162e-03

Joint ci ratio: 7.062940e-02	ci left: 1.990206e-03	ci right 2.136573e-03	k: 3073	n:1490000
Cons ci ratio: 4.042026e-03	ci left: 3.861829e-01	ci right 3.877477e-01	k: 576578	n:1490000
KS ci ratio: 9.967733e-02	ci left: 9.852175e-04	ci right 1.089221e-03	k: 1544	n:1490000
CASD1   1490000 perm   1186 sec   (1256 perm/sec)   p_kst 1.036242e-03   p_cons 3.869651e-01   p_joint 2.062416e-03

Outputting figure to mutsig2_images.part000000000030/CASD1.6_2466_1490000_0.0010362_0.38697_0.0020624.png
                gene_name: CASD1
               theta_stop: 0.100 
                    nperm: 1490000 
                     p_ks: 0.0010 
        ci_ks_bounds_left: 0.00099 
       ci_ks_bounds_right: 0.0011 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.0021 
     ci_joint_bounds_left: 0.0020 
    ci_joint_bounds_right: 0.0021 

Current progress: 24 percent done.
CATSPER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.149235e-02	ci left: 5.980500e-01	ci right 6.172873e-01	k: 6077	n:10000
Cons ci ratio: 2.436572e-02	ci left: 7.123987e-01	ci right 7.300722e-01	k: 7213	n:10000
KS ci ratio: 4.720036e-02	ci left: 3.984451e-01	ci right 4.178085e-01	k: 4081	n:10000
CATSPER1   10000 perm   2 sec   (5464 perm/sec)   p_kst 4.081000e-01   p_cons 7.213000e-01   p_joint 6.077000e-01

Outputting figure to mutsig2_images.part000000000030/CATSPER1.6_2391_10000_0.4081_0.7213_0.6077.png
                gene_name: CATSPER1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 25 percent done.
CATSPER4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.705912e-02	ci left: 8.334802e-01	ci right 8.479208e-01	k: 8408	n:10000
Cons ci ratio: 4.521658e-02	ci left: 4.192713e-01	ci right 4.387700e-01	k: 4290	n:10000
KS ci ratio: 2.000404e-02	ci left: 7.853299e-01	ci right 8.012989e-01	k: 7934	n:10000
CATSPER4   10000 perm   2 sec   (5652 perm/sec)   p_kst 7.934000e-01   p_cons 4.290000e-01   p_joint 8.408000e-01

Outputting figure to mutsig2_images.part000000000030/CATSPER4.6_1459_10000_0.7934_0.429_0.8408.png
                gene_name: CATSPER4
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 27 percent done.
CC2D2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.150451e-02	ci left: 3.572448e-01	ci right 3.762329e-01	k: 3667	n:10000
Cons ci ratio: 9.999502e-02	ci left: 1.264999e-01	ci right 1.399146e-01	k: 1331	n:10000
KS ci ratio: 2.939100e-02	ci left: 6.306030e-01	ci right 6.495153e-01	k: 6401	n:10000
CC2D2A   10000 perm   2 sec   (4576 perm/sec)   p_kst 6.401000e-01   p_cons 1.331000e-01   p_joint 3.667000e-01

Outputting figure to mutsig2_images.part000000000030/CC2D2A.6_5210_10000_0.6401_0.1331_0.3667.png
                gene_name: CC2D2A
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 29 percent done.
CCBL2
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.292744e-01	ci left: 7.873206e-02	ci right 8.971158e-02	k: 841	n:10000
Cons ci ratio: 4.429668e-02	ci left: 4.293421e-01	ci right 4.488934e-01	k: 4391	n:10000
KS ci ratio: 2.070530e-01	ci left: 3.100901e-02	ci right 3.826537e-02	k: 345	n:10000
CCBL2   10000 perm   2 sec   (5819 perm/sec)   p_kst 3.450000e-02   p_cons 4.391000e-01   p_joint 8.410000e-02

Joint ci ratio: 8.658713e-02	ci left: 8.891121e-02	ci right 9.700757e-02	k: 1858	n:20000
Cons ci ratio: 3.119204e-02	ci left: 4.343025e-01	ci right 4.481146e-01	k: 8824	n:20000
KS ci ratio: 1.440565e-01	ci left: 3.312301e-02	ci right 3.831311e-02	k: 713	n:20000
CCBL2   20000 perm   4 sec   (5218 perm/sec)   p_kst 3.565000e-02   p_cons 4.412000e-01   p_joint 9.290000e-02

Joint ci ratio: 8.116973e-02	ci left: 6.919799e-02	ci right 7.508520e-02	k: 2163	n:30000
Cons ci ratio: 2.531627e-02	ci left: 4.385331e-01	ci right 4.498111e-01	k: 13325	n:30000
KS ci ratio: 1.206947e-01	ci left: 3.191308e-02	ci right 3.604448e-02	k: 1018	n:30000
CCBL2   30000 perm   6 sec   (4986 perm/sec)   p_kst 3.393333e-02   p_cons 4.441667e-01   p_joint 7.210000e-02

Joint ci ratio: 6.419276e-02	ci left: 8.253104e-02	ci right 8.802934e-02	k: 3410	n:40000
Cons ci ratio: 2.194114e-02	ci left: 4.389229e-01	ci right 4.486853e-01	k: 17752	n:40000
KS ci ratio: 1.028394e-01	ci left: 3.324469e-02	ci right 3.687321e-02	k: 1401	n:40000
CCBL2   40000 perm   8 sec   (4828 perm/sec)   p_kst 3.502500e-02   p_cons 4.438000e-01   p_joint 8.525000e-02

Joint ci ratio: 6.462602e-02	ci left: 6.632068e-02	ci right 7.076957e-02	k: 3426	n:50000
Cons ci ratio: 1.959553e-02	ci left: 4.401778e-01	ci right 4.489087e-01	k: 22227	n:50000
KS ci ratio: 9.188750e-02	ci left: 3.350395e-02	ci right 3.675031e-02	k: 1755	n:50000
CCBL2   50000 perm   11 sec   (4703 perm/sec)   p_kst 3.510000e-02   p_cons 4.445400e-01   p_joint 6.852000e-02

Outputting figure to mutsig2_images.part000000000030/CCBL2.4_1417_50000_0.0351_0.44454_0.06852.png
                gene_name: CCBL2
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.071 

Current progress: 31 percent done.
CASS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.269812e-02	ci left: 7.402790e-01	ci right 7.573759e-01	k: 7489	n:10000
Cons ci ratio: 5.058591e-02	ci left: 3.655984e-01	ci right 3.846744e-01	k: 3751	n:10000
KS ci ratio: 1.624928e-02	ci left: 8.463146e-01	ci right 8.602789e-01	k: 8534	n:10000
CASS4   10000 perm   2 sec   (5818 perm/sec)   p_kst 8.534000e-01   p_cons 3.751000e-01   p_joint 7.489000e-01

Outputting figure to mutsig2_images.part000000000030/CASS4.5_2385_10000_0.8534_0.3751_0.7489.png
                gene_name: CASS4
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 32 percent done.
CBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.379690e-02	ci left: 7.218893e-01	ci right 7.393761e-01	k: 7307	n:10000
Cons ci ratio: 5.657045e-02	ci left: 3.151274e-01	ci right 3.335750e-01	k: 3243	n:10000
KS ci ratio: 2.522805e-02	ci left: 6.980709e-01	ci right 7.160083e-01	k: 7071	n:10000
CBL   10000 perm   2 sec   (5578 perm/sec)   p_kst 7.071000e-01   p_cons 3.243000e-01   p_joint 7.307000e-01

Outputting figure to mutsig2_images.part000000000030/CBL.5_2785_10000_0.7071_0.3243_0.7307.png
                gene_name: CBL
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 34 percent done.
CCDC102B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.679656e-02	ci left: 6.722668e-01	ci right 6.906274e-01	k: 6815	n:10000
Cons ci ratio: 5.198465e-02	ci left: 3.529698e-01	ci right 3.719104e-01	k: 3624	n:10000
KS ci ratio: 1.492718e-02	ci left: 8.667238e-01	ci right 8.798579e-01	k: 8734	n:10000
CCDC102B   10000 perm   2 sec   (5871 perm/sec)   p_kst 8.734000e-01   p_cons 3.624000e-01   p_joint 6.815000e-01

Outputting figure to mutsig2_images.part000000000030/CCDC102B.5_1570_10000_0.8734_0.3624_0.6815.png
                gene_name: CCDC102B
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 36 percent done.
CARD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.949046e-02	ci left: 7.938493e-01	ci right 8.095745e-01	k: 8018	n:10000
KS ci ratio: 1.443060e-02	ci left: 8.741858e-01	ci right 8.869915e-01	k: 8807	n:10000
CARD8   10000 perm   2 sec   (6066 perm/sec)   p_kst 8.807000e-01   p_cons 8.018000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CARD8.4_1662_10000_0.8807_0.8018_1.png
                gene_name: CARD8
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
CASK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.385802e-02	ci left: 3.368712e-01	ci right 3.556184e-01	k: 3462	n:10000
Cons ci ratio: 2.236629e-02	ci left: 7.458401e-01	ci right 7.628115e-01	k: 7544	n:10000
KS ci ratio: 9.148904e-02	ci left: 1.479580e-01	ci right 1.622435e-01	k: 1550	n:10000
CASK   10000 perm   2 sec   (5160 perm/sec)   p_kst 1.550000e-01   p_cons 7.544000e-01   p_joint 3.462000e-01

Outputting figure to mutsig2_images.part000000000030/CASK.4_2889_10000_0.155_0.7544_0.3462.png
                gene_name: CASK
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 39 percent done.
CASP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.962205e-02	ci left: 2.322487e-01	ci right 2.491027e-01	k: 2406	n:10000
Cons ci ratio: 3.204988e-02	ci left: 5.896176e-01	ci right 6.089245e-01	k: 5993	n:10000
KS ci ratio: 1.025873e-01	ci left: 1.208265e-01	ci right 1.339914e-01	k: 1273	n:10000
CASP2   10000 perm   2 sec   (6278 perm/sec)   p_kst 1.273000e-01   p_cons 5.993000e-01   p_joint 2.406000e-01

Joint ci ratio: 5.067345e-02	ci left: 2.244300e-01	ci right 2.361485e-01	k: 4605	n:20000
Cons ci ratio: 2.250148e-02	ci left: 5.959288e-01	ci right 6.095413e-01	k: 12055	n:20000
KS ci ratio: 7.326820e-02	ci left: 1.205939e-01	ci right 1.298153e-01	k: 2503	n:20000
CASP2   20000 perm   4 sec   (5567 perm/sec)   p_kst 1.251500e-01   p_cons 6.027500e-01   p_joint 2.302500e-01

Outputting figure to mutsig2_images.part000000000030/CASP2.4_1403_20000_0.12515_0.60275_0.23025.png
                gene_name: CASP2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 41 percent done.
CASP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.031520e-02	ci left: 4.760594e-01	ci right 4.957488e-01	k: 4859	n:10000
Cons ci ratio: 4.188009e-02	ci left: 4.570825e-01	ci right 4.767368e-01	k: 4669	n:10000
KS ci ratio: 6.202778e-02	ci left: 2.764632e-01	ci right 2.942620e-01	k: 2853	n:10000
CASP5   10000 perm   2 sec   (6236 perm/sec)   p_kst 2.853000e-01   p_cons 4.669000e-01   p_joint 4.859000e-01

Outputting figure to mutsig2_images.part000000000030/CASP5.4_1380_10000_0.2853_0.4669_0.4859.png
                gene_name: CASP5
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 42 percent done.
CASQ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.413621e-01	ci left: 6.633192e-02	ci right 7.651945e-02	k: 713	n:10000
Cons ci ratio: 7.692583e-03	ci left: 9.591130e-01	ci right 9.666143e-01	k: 9630	n:10000
KS ci ratio: 2.895240e-01	ci left: 1.539246e-02	ci right 2.069361e-02	k: 179	n:10000
CASQ2   10000 perm   2 sec   (5851 perm/sec)   p_kst 1.790000e-02   p_cons 9.630000e-01   p_joint 7.130000e-02

Joint ci ratio: 1.167586e-01	ci left: 5.022695e-02	ci right 5.650370e-02	k: 1066	n:20000
Cons ci ratio: 5.293814e-03	ci left: 9.622042e-01	ci right 9.673595e-01	k: 19297	n:20000
KS ci ratio: 2.117242e-01	ci left: 1.506432e-02	ci right 1.867810e-02	k: 336	n:20000
CASQ2   20000 perm   4 sec   (5273 perm/sec)   p_kst 1.680000e-02   p_cons 9.648500e-01   p_joint 5.330000e-02

Joint ci ratio: 8.775248e-02	ci left: 5.962343e-02	ci right 6.512837e-02	k: 1870	n:30000
Cons ci ratio: 4.335276e-03	ci left: 9.624811e-01	ci right 9.666950e-01	k: 28939	n:30000
KS ci ratio: 1.705713e-01	ci left: 1.582285e-02	ci right 1.880502e-02	k: 518	n:30000
CASQ2   30000 perm   6 sec   (5024 perm/sec)   p_kst 1.726667e-02   p_cons 9.646333e-01   p_joint 6.233333e-02

Joint ci ratio: 1.040766e-01	ci left: 3.246471e-02	ci right 3.605332e-02	k: 1369	n:40000
Cons ci ratio: 3.729728e-03	ci left: 9.632293e-01	ci right 9.668528e-01	k: 38603	n:40000
KS ci ratio: 1.458017e-01	ci left: 1.645451e-02	ci right 1.906617e-02	k: 709	n:40000
CASQ2   40000 perm   8 sec   (4869 perm/sec)   p_kst 1.772500e-02   p_cons 9.650750e-01   p_joint 3.422500e-02

Joint ci ratio: 8.280320e-02	ci left: 4.112087e-02	ci right 4.469245e-02	k: 2144	n:50000
Cons ci ratio: 3.322637e-03	ci left: 9.636994e-01	ci right 9.669262e-01	k: 48267	n:50000
KS ci ratio: 1.305217e-01	ci left: 1.656229e-02	ci right 1.889418e-02	k: 885	n:50000
CASQ2   50000 perm   11 sec   (4667 perm/sec)   p_kst 1.770000e-02   p_cons 9.653400e-01   p_joint 4.288000e-02

Joint ci ratio: 7.774373e-02	ci left: 3.906744e-02	ci right 4.224385e-02	k: 2438	n:60000
Cons ci ratio: 2.985424e-03	ci left: 9.649101e-01	ci right 9.678113e-01	k: 57983	n:60000
KS ci ratio: 1.191611e-01	ci left: 1.665997e-02	ci right 1.878704e-02	k: 1062	n:60000
CASQ2   60000 perm   13 sec   (4472 perm/sec)   p_kst 1.770000e-02   p_cons 9.663833e-01   p_joint 4.063333e-02

Joint ci ratio: 6.837936e-02	ci left: 4.330741e-02	ci right 4.638760e-02	k: 3138	n:70000
Cons ci ratio: 2.763173e-03	ci left: 9.650385e-01	ci right 9.677227e-01	k: 67648	n:70000
KS ci ratio: 1.098792e-01	ci left: 1.687507e-02	ci right 1.885090e-02	k: 1249	n:70000
CASQ2   70000 perm   16 sec   (4311 perm/sec)   p_kst 1.784286e-02   p_cons 9.664000e-01   p_joint 4.482857e-02

Joint ci ratio: 6.397642e-02	ci left: 4.338912e-02	ci right 4.626901e-02	k: 3585	n:80000
Cons ci ratio: 2.580173e-03	ci left: 9.652426e-01	ci right 9.677485e-01	k: 77321	n:80000
KS ci ratio: 1.027304e-01	ci left: 1.695594e-02	ci right 1.880426e-02	k: 1429	n:80000
CASQ2   80000 perm   19 sec   (4258 perm/sec)   p_kst 1.786250e-02   p_cons 9.665125e-01   p_joint 4.481250e-02

Joint ci ratio: 5.406415e-02	ci left: 5.369487e-02	ci right 5.668944e-02	k: 4966	n:90000
Cons ci ratio: 2.417971e-03	ci left: 9.657105e-01	ci right 9.680593e-01	k: 87021	n:90000
KS ci ratio: 9.663371e-02	ci left: 1.708717e-02	ci right 1.883299e-02	k: 1615	n:90000
CASQ2   90000 perm   22 sec   (4164 perm/sec)   p_kst 1.794444e-02   p_cons 9.669000e-01   p_joint 5.517778e-02

Outputting figure to mutsig2_images.part000000000030/CASQ2.4_1244_90000_0.017944_0.9669_0.055178.png
                gene_name: CASQ2
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.057 

Current progress: 44 percent done.
CBFA2T2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.575560e-02	ci left: 2.535008e-01	ci right 2.708379e-01	k: 2621	n:10000
Cons ci ratio: 5.849639e-02	ci left: 3.007434e-01	ci right 3.189675e-01	k: 3098	n:10000
KS ci ratio: 5.221033e-02	ci left: 3.509817e-01	ci right 3.698997e-01	k: 3604	n:10000
CBFA2T2   10000 perm   2 sec   (5980 perm/sec)   p_kst 3.604000e-01   p_cons 3.098000e-01   p_joint 2.621000e-01

Outputting figure to mutsig2_images.part000000000030/CBFA2T2.4_1897_10000_0.3604_0.3098_0.2621.png
                gene_name: CBFA2T2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 46 percent done.
CBX8
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.399460e-02	ci left: 5.609292e-01	ci right 5.804296e-01	k: 5707	n:10000
KS ci ratio: 1.450598e-02	ci left: 8.730609e-01	ci right 8.859171e-01	k: 8796	n:10000
CBX8   10000 perm   2 sec   (6360 perm/sec)   p_kst 8.796000e-01   p_cons 5.707000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CBX8.2_1190_10000_0.8796_0.5707_1.png
                gene_name: CBX8
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
CC2D1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.517934e-02	ci left: 6.988779e-01	ci right 7.168009e-01	k: 7079	n:10000
Cons ci ratio: 4.455838e-02	ci left: 4.264501e-01	ci right 4.459871e-01	k: 4362	n:10000
KS ci ratio: 3.825701e-02	ci left: 5.022507e-01	ci right 5.219422e-01	k: 5121	n:10000
CC2D1B   10000 perm   2 sec   (5656 perm/sec)   p_kst 5.121000e-01   p_cons 4.362000e-01   p_joint 7.079000e-01

Outputting figure to mutsig2_images.part000000000030/CC2D1B.4_2669_10000_0.5121_0.4362_0.7079.png
                gene_name: CC2D1B
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 49 percent done.
CASP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.607707e-02	ci left: 6.840560e-01	ci right 7.022314e-01	k: 6932	n:10000
Cons ci ratio: 5.093290e-02	ci left: 3.624157e-01	ci right 3.814590e-01	k: 3719	n:10000
KS ci ratio: 2.229388e-02	ci left: 7.470537e-01	ci right 7.639972e-01	k: 7556	n:10000
CASP4   10000 perm   1 sec   (6769 perm/sec)   p_kst 7.556000e-01   p_cons 3.719000e-01   p_joint 6.932000e-01

Outputting figure to mutsig2_images.part000000000030/CASP4.3_1166_10000_0.7556_0.3719_0.6932.png
                gene_name: CASP4
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 51 percent done.
CAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.314654e-02	ci left: 4.423104e-01	ci right 4.619175e-01	k: 4521	n:10000
KS ci ratio: 2.406905e-02	ci left: 7.173453e-01	ci right 7.349227e-01	k: 7262	n:10000
CAT   10000 perm   2 sec   (5966 perm/sec)   p_kst 7.262000e-01   p_cons 4.521000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CAT.3_1636_10000_0.7262_0.4521_1.png
                gene_name: CAT
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
CATSPERG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.457943e-02	ci left: 3.309118e-01	ci right 3.495813e-01	k: 3402	n:10000
Cons ci ratio: 4.107303e-02	ci left: 4.667689e-01	ci right 4.864447e-01	k: 4766	n:10000
KS ci ratio: 7.340334e-02	ci left: 2.136891e-01	ci right 2.300732e-01	k: 2218	n:10000
CATSPERG   10000 perm   2 sec   (5219 perm/sec)   p_kst 2.218000e-01   p_cons 4.766000e-01   p_joint 3.402000e-01

Outputting figure to mutsig2_images.part000000000030/CATSPERG.3_3592_10000_0.2218_0.4766_0.3402.png
                gene_name: CATSPERG
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 54 percent done.
CAV3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.394806e-02	ci left: 7.193647e-01	ci right 7.369022e-01	k: 7282	n:10000
KS ci ratio: 2.629179e-02	ci left: 6.805286e-01	ci right 6.987608e-01	k: 6897	n:10000
CAV3   10000 perm   1 sec   (6701 perm/sec)   p_kst 6.897000e-01   p_cons 7.282000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CAV3.3_464_10000_0.6897_0.7282_1.png
                gene_name: CAV3
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
CBFB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.966875e-01	ci left: 3.443296e-02	ci right 4.203907e-02	k: 381	n:10000
Cons ci ratio: 8.588454e-02	ci left: 1.649446e-01	ci right 1.798468e-01	k: 1723	n:10000
KS ci ratio: 1.387633e-01	ci left: 6.875045e-02	ci right 7.909941e-02	k: 738	n:10000
CBFB   10000 perm   1 sec   (6757 perm/sec)   p_kst 7.380000e-02   p_cons 1.723000e-01   p_joint 3.810000e-02

Joint ci ratio: 1.657632e-01	ci left: 2.494157e-02	ci right 2.949728e-02	k: 543	n:20000
Cons ci ratio: 6.002700e-02	ci left: 1.704482e-01	ci right 1.810463e-01	k: 3514	n:20000
KS ci ratio: 9.969730e-02	ci left: 6.816195e-02	ci right 7.536315e-02	k: 1434	n:20000
CBFB   20000 perm   3 sec   (5905 perm/sec)   p_kst 7.170000e-02   p_cons 1.757000e-01   p_joint 2.715000e-02

Joint ci ratio: 8.833296e-02	ci left: 5.887260e-02	ci right 6.434601e-02	k: 1847	n:30000
Cons ci ratio: 4.904311e-02	ci left: 1.712434e-01	ci right 1.798862e-01	k: 5266	n:30000
KS ci ratio: 8.169992e-02	ci left: 6.834769e-02	ci right 7.420233e-02	k: 2137	n:30000
CBFB   30000 perm   5 sec   (5600 perm/sec)   p_kst 7.123333e-02   p_cons 1.755333e-01   p_joint 6.156667e-02

Outputting figure to mutsig2_images.part000000000030/CBFB.3_619_30000_0.071233_0.17553_0.061567.png
                gene_name: CBFB
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.064 

Current progress: 58 percent done.
CBS
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.583430e-02	ci left: 5.348776e-01	ci right 5.544964e-01	k: 5447	n:10000
KS ci ratio: 1.828636e-02	ci left: 8.136481e-01	ci right 8.287643e-01	k: 8213	n:10000
CBS   10000 perm   2 sec   (6362 perm/sec)   p_kst 8.213000e-01   p_cons 5.447000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CBS.2_1716_10000_0.8213_0.5447_1.png
                gene_name: CBS
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
CBX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.619910e-02	ci left: 4.088062e-01	ci right 4.282413e-01	k: 4185	n:10000
Cons ci ratio: 1.739975e-01	ci left: 4.408409e-02	ci right 5.258151e-02	k: 482	n:10000
KS ci ratio: 1.838591e-02	ci left: 8.120224e-01	ci right 8.271909e-01	k: 8197	n:10000
CBX3   10000 perm   2 sec   (5853 perm/sec)   p_kst 8.197000e-01   p_cons 4.820000e-02   p_joint 4.185000e-01

Joint ci ratio: 1.855043e-02	ci left: 6.841916e-01	ci right 6.970529e-01	k: 13813	n:20000
Cons ci ratio: 1.224394e-01	ci left: 4.575777e-02	ci right 5.177429e-02	k: 974	n:20000
KS ci ratio: 1.282415e-02	ci left: 8.183467e-01	ci right 8.289590e-01	k: 16474	n:20000
CBX3   20000 perm   4 sec   (5222 perm/sec)   p_kst 8.237000e-01   p_cons 4.870000e-02   p_joint 6.906500e-01

Joint ci ratio: 2.616406e-02	ci left: 4.223583e-01	ci right 4.335890e-01	k: 12839	n:30000
Cons ci ratio: 9.906753e-02	ci left: 4.713763e-02	ci right 5.208339e-02	k: 1487	n:30000
KS ci ratio: 1.046233e-02	ci left: 8.195754e-01	ci right 8.282284e-01	k: 24718	n:30000
CBX3   30000 perm   6 sec   (5209 perm/sec)   p_kst 8.239333e-01   p_cons 4.956667e-02   p_joint 4.279667e-01

Outputting figure to mutsig2_images.part000000000030/CBX3.3_572_30000_0.82393_0.049567_0.42797.png
                gene_name: CBX3
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 61 percent done.
CCBE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.338209e-02	ci left: 2.137878e-01	ci right 2.301745e-01	k: 2219	n:10000
Cons ci ratio: 5.710380e-02	ci left: 3.110592e-01	ci right 3.294457e-01	k: 3202	n:10000
KS ci ratio: 1.200103e-01	ci left: 9.058624e-02	ci right 1.022501e-01	k: 963	n:10000
CCBE1   10000 perm   2 sec   (6147 perm/sec)   p_kst 9.630000e-02   p_cons 3.202000e-01   p_joint 2.219000e-01

Joint ci ratio: 4.935896e-02	ci left: 2.337967e-01	ci right 2.456790e-01	k: 4794	n:20000
Cons ci ratio: 3.970216e-02	ci left: 3.211456e-01	ci right 3.342045e-01	k: 6553	n:20000
KS ci ratio: 8.387830e-02	ci left: 9.430561e-02	ci right 1.026115e-01	k: 1968	n:20000
CCBE1   20000 perm   4 sec   (5500 perm/sec)   p_kst 9.840000e-02   p_cons 3.276500e-01   p_joint 2.397000e-01

Outputting figure to mutsig2_images.part000000000030/CCBE1.3_1265_20000_0.0984_0.32765_0.2397.png
                gene_name: CCBE1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 63 percent done.
CCBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.016861e-02	ci left: 7.825926e-01	ci right 7.986378e-01	k: 7907	n:10000
Cons ci ratio: 3.670990e-02	ci left: 5.228628e-01	ci right 5.425181e-01	k: 5327	n:10000
KS ci ratio: 7.799618e-03	ci left: 9.580656e-01	ci right 9.656623e-01	k: 9620	n:10000
CCBL1   10000 perm   2 sec   (6212 perm/sec)   p_kst 9.620000e-01   p_cons 5.327000e-01   p_joint 7.907000e-01

Outputting figure to mutsig2_images.part000000000030/CCBL1.3_1317_10000_0.962_0.5327_0.7907.png
                gene_name: CCBL1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 64 percent done.
CCDC104
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.765417e-02	ci left: 8.239157e-01	ci right 8.386908e-01	k: 8314	n:10000
KS ci ratio: 4.016222e-02	ci left: 4.779579e-01	ci right 4.976493e-01	k: 4878	n:10000
CCDC104   10000 perm   2 sec   (6184 perm/sec)   p_kst 4.878000e-01   p_cons 8.314000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CCDC104.3_1069_10000_0.4878_0.8314_1.png
                gene_name: CCDC104
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
CCDC106
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.123819e-03	ci left: 9.548231e-01	ci right 9.627068e-01	k: 9589	n:10000
Cons ci ratio: 3.147915e-02	ci left: 5.982508e-01	ci right 6.174863e-01	k: 6079	n:10000
KS ci ratio: 3.404318e-02	ci left: 5.602275e-01	ci right 5.797317e-01	k: 5700	n:10000
CCDC106   10000 perm   1 sec   (6735 perm/sec)   p_kst 5.700000e-01   p_cons 6.079000e-01   p_joint 9.589000e-01

Outputting figure to mutsig2_images.part000000000030/CCDC106.3_863_10000_0.57_0.6079_0.9589.png
                gene_name: CCDC106
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 68 percent done.
CARD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.522390e-02	ci left: 1.379571e-01	ci right 1.518505e-01	k: 1448	n:10000
Cons ci ratio: 7.172305e-02	ci left: 2.216827e-01	ci right 2.382749e-01	k: 2299	n:10000
KS ci ratio: 1.407264e-01	ci left: 6.691220e-02	ci right 7.713880e-02	k: 719	n:10000
CARD9   10000 perm   2 sec   (6220 perm/sec)   p_kst 7.190000e-02   p_cons 2.299000e-01   p_joint 1.448000e-01

Joint ci ratio: 5.159093e-02	ci left: 2.181878e-01	ci right 2.297926e-01	k: 4479	n:20000
Cons ci ratio: 4.889630e-02	ci left: 2.372173e-01	ci right 2.491574e-01	k: 4863	n:20000
KS ci ratio: 1.005682e-01	ci left: 6.703871e-02	ci right 7.418673e-02	k: 1411	n:20000
CARD9   20000 perm   4 sec   (5483 perm/sec)   p_kst 7.055000e-02   p_cons 2.431500e-01   p_joint 2.239500e-01

Joint ci ratio: 4.904311e-02	ci left: 1.712434e-01	ci right 1.798862e-01	k: 5266	n:30000
Cons ci ratio: 4.004708e-02	ci left: 2.371951e-01	ci right 2.469216e-01	k: 7261	n:30000
KS ci ratio: 8.391874e-02	ci left: 6.494777e-02	ci right 7.066961e-02	k: 2033	n:30000
CARD9   30000 perm   6 sec   (5215 perm/sec)   p_kst 6.776667e-02   p_cons 2.420333e-01   p_joint 1.755333e-01

Outputting figure to mutsig2_images.part000000000030/CARD9.2_1712_30000_0.067767_0.24203_0.17553.png
                gene_name: CARD9
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 69 percent done.
CARKD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.806805e-02	ci left: 8.172052e-01	ci right 8.322052e-01	k: 8248	n:10000
Cons ci ratio: 5.336215e-02	ci left: 3.410438e-01	ci right 3.598434e-01	k: 3504	n:10000
KS ci ratio: 2.306014e-02	ci left: 7.342143e-01	ci right 7.514440e-01	k: 7429	n:10000
CARKD   10000 perm   2 sec   (6352 perm/sec)   p_kst 7.429000e-01   p_cons 3.504000e-01   p_joint 8.248000e-01

Outputting figure to mutsig2_images.part000000000030/CARKD.2_1213_10000_0.7429_0.3504_0.8248.png
                gene_name: CARKD
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 71 percent done.
CARM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.095056e-02	ci left: 2.835954e-01	ci right 3.015256e-01	k: 2925	n:10000
Cons ci ratio: 1.240382e-01	ci left: 8.514113e-02	ci right 9.649855e-02	k: 907	n:10000
KS ci ratio: 1.813050e-02	ci left: 8.161888e-01	ci right 8.312222e-01	k: 8238	n:10000
CARM1   10000 perm   2 sec   (6115 perm/sec)   p_kst 8.238000e-01   p_cons 9.070000e-02   p_joint 2.925000e-01

Joint ci ratio: 4.077599e-02	ci left: 3.095589e-01	ci right 3.224946e-01	k: 6320	n:20000
Cons ci ratio: 8.713076e-02	ci left: 8.788185e-02	ci right 9.593725e-02	k: 1837	n:20000
KS ci ratio: 1.273356e-02	ci left: 8.204207e-01	ci right 8.309844e-01	k: 16515	n:20000
CARM1   20000 perm   4 sec   (5437 perm/sec)   p_kst 8.257500e-01   p_cons 9.185000e-02   p_joint 3.160000e-01

Outputting figure to mutsig2_images.part000000000030/CARM1.2_1891_20000_0.82575_0.09185_0.316.png
                gene_name: CARM1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 73 percent done.
CASC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.474450e-02	ci left: 8.694829e-01	ci right 8.824972e-01	k: 8761	n:10000
Cons ci ratio: 1.208232e-02	ci left: 9.076136e-01	ci right 9.187443e-01	k: 9133	n:10000
KS ci ratio: 2.990320e-02	ci left: 6.225610e-01	ci right 6.415620e-01	k: 6321	n:10000
CASC4   10000 perm   2 sec   (6529 perm/sec)   p_kst 6.321000e-01   p_cons 9.133000e-01   p_joint 8.761000e-01

Outputting figure to mutsig2_images.part000000000030/CASC4.2_1351_10000_0.6321_0.9133_0.8761.png
                gene_name: CASC4
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 75 percent done.
CASP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.640140e-02	ci left: 5.270673e-01	ci right 5.467112e-01	k: 5369	n:10000
Cons ci ratio: 5.342080e-02	ci left: 3.405470e-01	ci right 3.593405e-01	k: 3499	n:10000
KS ci ratio: 3.919412e-02	ci left: 4.901514e-01	ci right 5.098486e-01	k: 5000	n:10000
CASP1   10000 perm   1 sec   (6807 perm/sec)   p_kst 5.000000e-01   p_cons 3.499000e-01   p_joint 5.369000e-01

Outputting figure to mutsig2_images.part000000000030/CASP1.2_1251_10000_0.5_0.3499_0.5369.png
                gene_name: CASP1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 76 percent done.
CASP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.325328e-02	ci left: 7.309807e-01	ci right 7.482795e-01	k: 7397	n:10000
KS ci ratio: 4.030713e-02	ci left: 4.761593e-01	ci right 4.958489e-01	k: 4860	n:10000
CASP10   10000 perm   2 sec   (6406 perm/sec)   p_kst 4.860000e-01   p_cons 7.397000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CASP10.2_1760_10000_0.486_0.7397_1.png
                gene_name: CASP10
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
CASP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.539588e-02	ci left: 5.409873e-01	ci right 5.605831e-01	k: 5508	n:10000
KS ci ratio: 5.557882e-02	ci left: 3.228692e-01	ci right 3.414287e-01	k: 3321	n:10000
CASP3   10000 perm   1 sec   (6777 perm/sec)   p_kst 3.321000e-01   p_cons 5.508000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CASP3.2_858_10000_0.3321_0.5508_1.png
                gene_name: CASP3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
CASP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.525972e-01	ci left: 5.715872e-02	ci right 6.669845e-02	k: 618	n:10000
Cons ci ratio: 2.313764e-01	ci left: 2.466595e-02	ci right 3.121293e-02	k: 278	n:10000
KS ci ratio: 6.894319e-02	ci left: 2.358052e-01	ci right 2.527440e-01	k: 2442	n:10000
CASP6   10000 perm   1 sec   (6716 perm/sec)   p_kst 2.442000e-01   p_cons 2.780000e-02   p_joint 6.180000e-02

Joint ci ratio: 4.879027e-02	ci left: 2.380106e-01	ci right 2.499639e-01	k: 4879	n:20000
Cons ci ratio: 1.460843e-01	ci left: 3.220637e-02	ci right 3.733005e-02	k: 694	n:20000
KS ci ratio: 4.909636e-02	ci left: 2.357301e-01	ci right 2.476451e-01	k: 4833	n:20000
CASP6   20000 perm   3 sec   (5970 perm/sec)   p_kst 2.416500e-01   p_cons 3.470000e-02   p_joint 2.439500e-01

Joint ci ratio: 6.547273e-02	ci left: 1.032280e-01	ci right 1.102484e-01	k: 3201	n:30000
Cons ci ratio: 1.183117e-01	ci left: 3.320786e-02	ci right 3.741609e-02	k: 1058	n:30000
KS ci ratio: 4.010172e-02	ci left: 2.366985e-01	ci right 2.464182e-01	k: 7246	n:30000
CASP6   30000 perm   5 sec   (5683 perm/sec)   p_kst 2.415333e-01   p_cons 3.526667e-02   p_joint 1.067000e-01

Joint ci ratio: 6.575404e-02	ci left: 7.891057e-02	ci right 8.430035e-02	k: 3263	n:40000
Cons ci ratio: 1.010962e-01	ci left: 3.439075e-02	ci right 3.807697e-02	k: 1448	n:40000
KS ci ratio: 3.476157e-02	ci left: 2.370139e-01	ci right 2.454237e-01	k: 9648	n:40000
CASP6   40000 perm   7 sec   (5484 perm/sec)   p_kst 2.412000e-01   p_cons 3.620000e-02   p_joint 8.157500e-02

Joint ci ratio: 7.634991e-02	ci left: 4.816474e-02	ci right 5.200771e-02	k: 2503	n:50000
Cons ci ratio: 9.053363e-02	ci left: 3.450149e-02	ci right 3.779265e-02	k: 1806	n:50000
KS ci ratio: 3.113808e-02	ci left: 2.369181e-01	ci right 2.444320e-01	k: 12033	n:50000
CASP6   50000 perm   9 sec   (5316 perm/sec)   p_kst 2.406600e-01   p_cons 3.612000e-02   p_joint 5.006000e-02

Outputting figure to mutsig2_images.part000000000030/CASP6.2_910_50000_0.24066_0.03612_0.05006.png
                gene_name: CASP6
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.052 

Current progress: 81 percent done.
CASP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.004304e-01	ci left: 1.255214e-01	ci right 1.388936e-01	k: 1321	n:10000
Cons ci ratio: 1.043307e-01	ci left: 1.172096e-01	ci right 1.302105e-01	k: 1236	n:10000
KS ci ratio: 2.969783e-02	ci left: 6.257775e-01	ci right 6.447437e-01	k: 6353	n:10000
CASP9   10000 perm   2 sec   (6541 perm/sec)   p_kst 6.353000e-01   p_cons 1.236000e-01   p_joint 1.321000e-01

Joint ci ratio: 6.415587e-02	ci left: 1.522299e-01	ci right 1.623700e-01	k: 3145	n:20000
Cons ci ratio: 7.196004e-02	ci left: 1.245313e-01	ci right 1.338768e-01	k: 2583	n:20000
KS ci ratio: 2.082185e-02	ci left: 6.325498e-01	ci right 6.459097e-01	k: 12785	n:20000
CASP9   20000 perm   4 sec   (5630 perm/sec)   p_kst 6.392500e-01   p_cons 1.291500e-01   p_joint 1.572500e-01

Outputting figure to mutsig2_images.part000000000030/CASP9.2_1287_20000_0.63925_0.12915_0.15725.png
                gene_name: CASP9
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 83 percent done.
CASQ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.560629e-02	ci left: 4.150847e-01	ci right 4.345591e-01	k: 4248	n:10000
Cons ci ratio: 2.921903e-02	ci left: 6.333178e-01	ci right 6.521989e-01	k: 6428	n:10000
KS ci ratio: 8.905489e-02	ci left: 1.550240e-01	ci right 1.695733e-01	k: 1622	n:10000
CASQ1   10000 perm   2 sec   (6636 perm/sec)   p_kst 1.622000e-01   p_cons 6.428000e-01   p_joint 4.248000e-01

Outputting figure to mutsig2_images.part000000000030/CASQ1.2_1235_10000_0.1622_0.6428_0.4248.png
                gene_name: CASQ1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 85 percent done.
CAST
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.308937e-01	ci left: 7.688883e-02	ci right 8.775595e-02	k: 822	n:10000
Cons ci ratio: 1.518144e-01	ci left: 5.773721e-02	ci right 6.731959e-02	k: 624	n:10000
KS ci ratio: 3.111066e-02	ci left: 6.038741e-01	ci right 6.230598e-01	k: 6135	n:10000
CAST   10000 perm   2 sec   (5725 perm/sec)   p_kst 6.135000e-01   p_cons 6.240000e-02   p_joint 8.220000e-02

Joint ci ratio: 1.077657e-01	ci left: 5.869667e-02	ci right 6.543134e-02	k: 1240	n:20000
Cons ci ratio: 1.080444e-01	ci left: 5.840428e-02	ci right 6.512383e-02	k: 1234	n:20000
KS ci ratio: 2.184228e-02	ci left: 6.101209e-01	ci right 6.236451e-01	k: 12338	n:20000
CAST   20000 perm   4 sec   (5192 perm/sec)   p_kst 6.169000e-01   p_cons 6.170000e-02   p_joint 6.200000e-02

Joint ci ratio: 9.211004e-02	ci left: 5.430500e-02	ci right 5.958121e-02	k: 1707	n:30000
Cons ci ratio: 8.905410e-02	ci left: 5.795871e-02	ci right 6.339342e-02	k: 1819	n:30000
KS ci ratio: 1.773649e-02	ci left: 6.139780e-01	ci right 6.249988e-01	k: 18585	n:30000
CAST   30000 perm   6 sec   (4987 perm/sec)   p_kst 6.195000e-01   p_cons 6.063333e-02   p_joint 5.690000e-02

Outputting figure to mutsig2_images.part000000000030/CAST.2_2624_30000_0.6195_0.060633_0.0569.png
                gene_name: CAST
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.060 

Current progress: 86 percent done.
CATSPER2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.181557e-02	ci left: 2.778498e-01	ci right 2.956746e-01	k: 2867	n:10000
Cons ci ratio: 3.242749e-03	ci left: 9.914989e-01	ci right 9.948039e-01	k: 9933	n:10000
KS ci ratio: 1.052552e-01	ci left: 1.153530e-01	ci right 1.282683e-01	k: 1217	n:10000
CATSPER2   10000 perm   2 sec   (6404 perm/sec)   p_kst 1.217000e-01   p_cons 9.933000e-01   p_joint 2.867000e-01

Joint ci ratio: 2.888573e-02	ci left: 4.724048e-01	ci right 4.863012e-01	k: 9587	n:20000
Cons ci ratio: 2.417329e-03	ci left: 9.912049e-01	ci right 9.936487e-01	k: 19850	n:20000
KS ci ratio: 7.423726e-02	ci left: 1.177895e-01	ci right 1.269206e-01	k: 2446	n:20000
CATSPER2   20000 perm   4 sec   (5668 perm/sec)   p_kst 1.223000e-01   p_cons 9.925000e-01   p_joint 4.793500e-01

Outputting figure to mutsig2_images.part000000000030/CATSPER2.2_1680_20000_0.1223_0.9925_0.47935.png
                gene_name: CATSPER2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 88 percent done.
CATSPER3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.612854e-03	ci left: 9.770621e-01	ci right 9.826535e-01	k: 9800	n:10000
Cons ci ratio: 3.266670e-03	ci left: 9.913872e-01	ci right 9.947158e-01	k: 9932	n:10000
KS ci ratio: 1.786148e-02	ci left: 8.205599e-01	ci right 8.354485e-01	k: 8281	n:10000
CATSPER3   10000 perm   2 sec   (6522 perm/sec)   p_kst 8.281000e-01   p_cons 9.932000e-01   p_joint 9.800000e-01

Outputting figure to mutsig2_images.part000000000030/CATSPER3.2_1229_10000_0.8281_0.9932_0.98.png
                gene_name: CATSPER3
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 90 percent done.
CBLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.011368e-01	ci left: 1.239561e-01	ci right 1.372599e-01	k: 1305	n:10000
Cons ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
KS ci ratio: 1.292744e-01	ci left: 7.873206e-02	ci right 8.971158e-02	k: 841	n:10000
CBLL1   10000 perm   2 sec   (6556 perm/sec)   p_kst 8.410000e-02   p_cons 1.422000e-01   p_joint 1.305000e-01

Joint ci ratio: 1.243967e-01	ci left: 4.435048e-02	ci right 5.028202e-02	k: 945	n:20000
Cons ci ratio: 6.961204e-02	ci left: 1.320656e-01	ci right 1.416403e-01	k: 2736	n:20000
KS ci ratio: 8.979208e-02	ci left: 8.308030e-02	ci right 9.094026e-02	k: 1739	n:20000
CBLL1   20000 perm   4 sec   (5580 perm/sec)   p_kst 8.695000e-02   p_cons 1.368000e-01   p_joint 4.725000e-02

Joint ci ratio: 7.078956e-02	ci left: 8.944116e-02	ci right 9.603796e-02	k: 2781	n:30000
Cons ci ratio: 5.681828e-02	ci left: 1.330289e-01	ci right 1.408416e-01	k: 4107	n:30000
KS ci ratio: 7.290317e-02	ci left: 8.468649e-02	ci right 9.112691e-02	k: 2636	n:30000
CBLL1   30000 perm   6 sec   (5364 perm/sec)   p_kst 8.786667e-02   p_cons 1.369000e-01   p_joint 9.270000e-02

Outputting figure to mutsig2_images.part000000000030/CBLL1.2_1500_30000_0.087867_0.1369_0.0927.png
                gene_name: CBLL1
               theta_stop: 0.073 
                    nperm: 30000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.096 

Current progress: 92 percent done.
CBR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.027334e-02	ci left: 9.308177e-01	ci right 9.405266e-01	k: 9358	n:10000
Cons ci ratio: 3.685760e-02	ci left: 5.208609e-01	ci right 5.405212e-01	k: 5307	n:10000
KS ci ratio: 3.895191e-02	ci left: 4.932507e-01	ci right 5.129475e-01	k: 5031	n:10000
CBR4   10000 perm   1 sec   (7180 perm/sec)   p_kst 5.031000e-01   p_cons 5.307000e-01   p_joint 9.358000e-01

Outputting figure to mutsig2_images.part000000000030/CBR4.2_734_10000_0.5031_0.5307_0.9358.png
                gene_name: CBR4
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 93 percent done.
CBX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.215508e-02	ci left: 7.493800e-01	ci right 7.662695e-01	k: 7579	n:10000
KS ci ratio: 2.998038e-02	ci left: 6.213549e-01	ci right 6.403688e-01	k: 6309	n:10000
CBX2   10000 perm   2 sec   (6216 perm/sec)   p_kst 6.309000e-01   p_cons 7.579000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000030/CBX2.2_1967_10000_0.6309_0.7579_1.png
                gene_name: CBX2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
CC2D1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.141594e-02	ci left: 3.580403e-01	ci right 3.770370e-01	k: 3675	n:10000
Cons ci ratio: 5.885386e-02	ci left: 2.981652e-01	ci right 3.163472e-01	k: 3072	n:10000
KS ci ratio: 4.826174e-02	ci left: 3.877898e-01	ci right 4.070700e-01	k: 3974	n:10000
CC2D1A   10000 perm   2 sec   (5720 perm/sec)   p_kst 3.974000e-01   p_cons 3.072000e-01   p_joint 3.675000e-01

Outputting figure to mutsig2_images.part000000000030/CC2D1A.2_2972_10000_0.3974_0.3072_0.3675.png
                gene_name: CC2D1A
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 97 percent done.
CCDC103
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
Cons ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
KS ci ratio: 5.418072e-02	ci left: 3.341893e-01	ci right 3.529019e-01	k: 3435	n:10000
CCDC103   10000 perm   1 sec   (7167 perm/sec)   p_kst 3.435000e-01   p_cons 1.000000e-03   p_joint 1.300000e-03

Joint ci ratio: 9.235139e-01	ci left: 4.952318e-04	ci right 1.360585e-03	k: 17	n:20000
Cons ci ratio: 1.011735e+00	ci left: 3.827477e-04	ci right 1.174202e-03	k: 14	n:20000
KS ci ratio: 3.864078e-02	ci left: 3.331349e-01	ci right 3.463117e-01	k: 6794	n:20000
CCDC103   20000 perm   3 sec   (6298 perm/sec)   p_kst 3.397000e-01   p_cons 7.000000e-04   p_joint 8.500000e-04

Joint ci ratio: 5.653410e-01	ci left: 1.151348e-03	ci right 2.082796e-03	k: 47	n:30000
Cons ci ratio: 8.551005e-01	ci left: 4.072634e-04	ci right 1.029426e-03	k: 20	n:30000
KS ci ratio: 3.141807e-02	ci left: 3.362324e-01	ci right 3.469983e-01	k: 10248	n:30000
CCDC103   30000 perm   5 sec   (5969 perm/sec)   p_kst 3.416000e-01   p_cons 6.666667e-04   p_joint 1.566667e-03

Joint ci ratio: 5.099577e-01	ci left: 1.101224e-03	ci right 1.874063e-03	k: 58	n:40000
Cons ci ratio: 7.405418e-01	ci left: 4.448749e-04	ci right 9.819388e-04	k: 27	n:40000
KS ci ratio: 2.731706e-02	ci left: 3.351826e-01	ci right 3.444907e-01	k: 13593	n:40000
CCDC103   40000 perm   7 sec   (5752 perm/sec)   p_kst 3.398250e-01   p_cons 6.750000e-04   p_joint 1.450000e-03

Joint ci ratio: 5.057610e-01	ci left: 8.983883e-04	ci right 1.521854e-03	k: 59	n:50000
Cons ci ratio: 6.720391e-01	ci left: 4.543558e-04	ci right 9.267617e-04	k: 33	n:50000
KS ci ratio: 2.432299e-02	ci left: 3.377016e-01	ci right 3.460367e-01	k: 17093	n:50000
CCDC103   50000 perm   9 sec   (5581 perm/sec)   p_kst 3.418600e-01   p_cons 6.600000e-04   p_joint 1.180000e-03

Joint ci ratio: 4.379734e-01	ci left: 1.042552e-03	ci right 1.640693e-03	k: 79	n:60000
Cons ci ratio: 6.046524e-01	ci left: 4.904150e-04	ci right 9.269059e-04	k: 41	n:60000
KS ci ratio: 2.211996e-02	ci left: 3.397661e-01	ci right 3.473824e-01	k: 20614	n:60000
CCDC103   60000 perm   11 sec   (5429 perm/sec)   p_kst 3.435667e-01   p_cons 6.833333e-04   p_joint 1.316667e-03

Joint ci ratio: 5.236187e-01	ci left: 5.919607e-04	ci right 1.022594e-03	k: 55	n:70000
Cons ci ratio: 5.777784e-01	ci left: 4.689419e-04	ci right 8.601000e-04	k: 45	n:70000
KS ci ratio: 2.047770e-02	ci left: 3.400813e-01	ci right 3.471317e-01	k: 24052	n:70000
CCDC103   70000 perm   13 sec   (5289 perm/sec)   p_kst 3.436000e-01   p_cons 6.428571e-04   p_joint 7.857143e-04

Joint ci ratio: 4.976444e-01	ci left: 5.833007e-04	ci right 9.793569e-04	k: 61	n:80000
Cons ci ratio: 5.541950e-01	ci left: 4.531642e-04	ci right 8.096776e-04	k: 49	n:80000
KS ci ratio: 1.913611e-02	ci left: 3.407575e-01	ci right 3.473538e-01	k: 27524	n:80000
CCDC103   80000 perm   15 sec   (5171 perm/sec)   p_kst 3.440500e-01   p_cons 6.125000e-04   p_joint 7.625000e-04

Joint ci ratio: 4.823390e-01	ci left: 5.574387e-04	ci right 9.204402e-04	k: 65	n:90000
Cons ci ratio: 5.058983e-01	ci left: 4.990756e-04	ci right 8.455385e-04	k: 59	n:90000
KS ci ratio: 1.802511e-02	ci left: 3.413616e-01	ci right 3.475817e-01	k: 31002	n:90000
CCDC103   90000 perm   18 sec   (5057 perm/sec)   p_kst 3.444667e-01   p_cons 6.555556e-04   p_joint 7.222222e-04

Joint ci ratio: 4.465512e-01	ci left: 5.988388e-04	ci right 9.511624e-04	k: 76	n:100000
Cons ci ratio: 4.937155e-01	ci left: 4.753825e-04	ci right 7.947425e-04	k: 62	n:100000
KS ci ratio: 1.710951e-02	ci left: 3.412748e-01	ci right 3.471742e-01	k: 34422	n:100000
CCDC103   100000 perm   20 sec   (4934 perm/sec)   p_kst 3.442200e-01   p_cons 6.200000e-04   p_joint 7.600000e-04

Joint ci ratio: 4.275418e-01	ci left: 6.010347e-04	ci right 9.352880e-04	k: 83	n:110000
Cons ci ratio: 4.717624e-01	ci left: 4.800734e-04	ci right 7.836279e-04	k: 68	n:110000
KS ci ratio: 1.631272e-02	ci left: 3.414282e-01	ci right 3.470527e-01	k: 37866	n:110000
CCDC103   110000 perm   23 sec   (4821 perm/sec)   p_kst 3.442364e-01   p_cons 6.181818e-04   p_joint 7.545455e-04

Joint ci ratio: 4.085299e-01	ci left: 6.106053e-04	ci right 9.309849e-04	k: 91	n:120000
Cons ci ratio: 4.465803e-01	ci left: 4.990261e-04	ci right 7.926479e-04	k: 76	n:120000
KS ci ratio: 1.563193e-02	ci left: 3.411538e-01	ci right 3.465370e-01	k: 41261	n:120000
CCDC103   120000 perm   25 sec   (4717 perm/sec)   p_kst 3.438417e-01   p_cons 6.333333e-04   p_joint 7.583333e-04

Joint ci ratio: 2.961235e-01	ci left: 1.147075e-03	ci right 1.552616e-03	k: 174	n:130000
Cons ci ratio: 4.275672e-01	ci left: 5.085621e-04	ci right 7.914086e-04	k: 83	n:130000
KS ci ratio: 1.502700e-02	ci left: 3.410104e-01	ci right 3.461812e-01	k: 44667	n:130000
CCDC103   130000 perm   28 sec   (4624 perm/sec)   p_kst 3.435923e-01   p_cons 6.384615e-04   p_joint 1.338462e-03

Joint ci ratio: 3.736091e-01	ci left: 6.393304e-04	ci right 9.391134e-04	k: 109	n:140000
Cons ci ratio: 4.063486e-01	ci left: 5.297817e-04	ci right 8.058674e-04	k: 92	n:140000
KS ci ratio: 1.446800e-02	ci left: 3.414899e-01	ci right 3.464737e-01	k: 48157	n:140000
CCDC103   140000 perm   31 sec   (4535 perm/sec)   p_kst 3.439786e-01   p_cons 6.571429e-04   p_joint 7.785714e-04

Joint ci ratio: 3.622616e-01	ci left: 6.390611e-04	ci right 9.274681e-04	k: 116	n:150000
Cons ci ratio: 3.938435e-01	ci left: 5.304384e-04	ci right 7.961472e-04	k: 98	n:150000
KS ci ratio: 1.397037e-02	ci left: 3.418020e-01	ci right 3.466173e-01	k: 51631	n:150000
CCDC103   150000 perm   34 sec   (4453 perm/sec)   p_kst 3.442067e-01   p_cons 6.533333e-04   p_joint 7.733333e-04

Joint ci ratio: 3.518889e-01	ci left: 6.389459e-04	ci right 9.171595e-04	k: 123	n:160000
Cons ci ratio: 3.842615e-01	ci left: 5.254791e-04	ci right 7.806806e-04	k: 103	n:160000
KS ci ratio: 1.352154e-02	ci left: 3.420527e-01	ci right 3.467154e-01	k: 55101	n:160000
CCDC103   160000 perm   37 sec   (4375 perm/sec)   p_kst 3.443813e-01   p_cons 6.437500e-04   p_joint 7.687500e-04

Joint ci ratio: 3.360018e-01	ci left: 6.658567e-04	ci right 9.398658e-04	k: 135	n:170000
Cons ci ratio: 3.638376e-01	ci left: 5.585272e-04	ci right 8.119455e-04	k: 115	n:170000
KS ci ratio: 1.311951e-02	ci left: 3.420646e-01	ci right 3.465878e-01	k: 58535	n:170000
CCDC103   170000 perm   40 sec   (4297 perm/sec)   p_kst 3.443235e-01   p_cons 6.764706e-04   p_joint 7.941176e-04

Joint ci ratio: 3.276757e-01	ci left: 6.645140e-04	ci right 9.297682e-04	k: 142	n:180000
Cons ci ratio: 3.562429e-01	ci left: 5.527629e-04	ci right 7.971179e-04	k: 120	n:180000
KS ci ratio: 1.274098e-02	ci left: 3.424431e-01	ci right 3.468397e-01	k: 62035	n:180000
CCDC103   180000 perm   43 sec   (4226 perm/sec)   p_kst 3.446389e-01   p_cons 6.666667e-04   p_joint 7.888889e-04

Joint ci ratio: 3.242960e-01	ci left: 6.440359e-04	ci right 8.979121e-04	k: 145	n:190000
Cons ci ratio: 3.519106e-01	ci left: 5.380545e-04	ci right 7.723539e-04	k: 123	n:190000
KS ci ratio: 1.240353e-02	ci left: 3.424156e-01	ci right 3.466944e-01	k: 65465	n:190000
CCDC103   190000 perm   46 sec   (4158 perm/sec)   p_kst 3.445526e-01   p_cons 6.473684e-04   p_joint 7.631579e-04

Joint ci ratio: 3.137280e-01	ci left: 6.578327e-04	ci right 9.070046e-04	k: 155	n:200000
Cons ci ratio: 3.385221e-01	ci left: 5.568193e-04	ci right 7.880517e-04	k: 133	n:200000
KS ci ratio: 1.209088e-02	ci left: 3.424171e-01	ci right 3.465874e-01	k: 68900	n:200000
CCDC103   200000 perm   49 sec   (4089 perm/sec)   p_kst 3.445000e-01   p_cons 6.650000e-04   p_joint 7.750000e-04

Joint ci ratio: 3.059803e-01	ci left: 6.616413e-04	ci right 9.048613e-04	k: 163	n:210000
Cons ci ratio: 3.300119e-01	ci left: 5.608406e-04	ci right 7.866456e-04	k: 140	n:210000
KS ci ratio: 1.179602e-02	ci left: 3.426005e-01	ci right 3.466705e-01	k: 72373	n:210000
CCDC103   210000 perm   52 sec   (4025 perm/sec)   p_kst 3.446333e-01   p_cons 6.666667e-04   p_joint 7.761905e-04

Joint ci ratio: 3.005334e-01	ci left: 6.567643e-04	ci right 8.930732e-04	k: 169	n:220000
Cons ci ratio: 3.232074e-01	ci left: 5.603848e-04	ci right 7.803900e-04	k: 146	n:220000
KS ci ratio: 1.152740e-02	ci left: 3.425458e-01	ci right 3.465219e-01	k: 75797	n:220000
CCDC103   220000 perm   56 sec   (3960 perm/sec)   p_kst 3.445318e-01   p_cons 6.636364e-04   p_joint 7.681818e-04

Joint ci ratio: 2.937021e-01	ci left: 6.604001e-04	ci right 8.916111e-04	k: 177	n:230000
Cons ci ratio: 3.157761e-01	ci left: 5.640150e-04	ci right 7.793267e-04	k: 153	n:230000
KS ci ratio: 1.128036e-02	ci left: 3.423363e-01	ci right 3.462242e-01	k: 79184	n:230000
CCDC103   230000 perm   59 sec   (3898 perm/sec)   p_kst 3.442783e-01   p_cons 6.652174e-04   p_joint 7.695652e-04

Joint ci ratio: 2.888748e-01	ci left: 6.560568e-04	ci right 8.812825e-04	k: 183	n:240000
Cons ci ratio: 3.097992e-01	ci left: 5.635523e-04	ci right 7.738109e-04	k: 159	n:240000
KS ci ratio: 1.104019e-02	ci left: 3.424863e-01	ci right 3.462925e-01	k: 82653	n:240000
CCDC103   240000 perm   63 sec   (3839 perm/sec)   p_kst 3.443875e-01   p_cons 6.625000e-04   p_joint 7.625000e-04

Joint ci ratio: 2.820583e-01	ci left: 6.632380e-04	ci right 8.846009e-04	k: 192	n:250000
Cons ci ratio: 3.014359e-01	ci left: 5.742508e-04	ci right 7.816094e-04	k: 168	n:250000
KS ci ratio: 1.081540e-02	ci left: 3.425971e-01	ci right 3.463265e-01	k: 86115	n:250000
CCDC103   250000 perm   66 sec   (3783 perm/sec)   p_kst 3.444600e-01   p_cons 6.720000e-04   p_joint 7.680000e-04

Joint ci ratio: 2.763881e-01	ci left: 6.663441e-04	ci right 8.834956e-04	k: 200	n:260000
Cons ci ratio: 2.962238e-01	ci left: 5.735113e-04	ci right 7.763494e-04	k: 174	n:260000
KS ci ratio: 1.060534e-02	ci left: 3.426348e-01	ci right 3.462917e-01	k: 89560	n:260000
CCDC103   260000 perm   70 sec   (3727 perm/sec)   p_kst 3.444615e-01   p_cons 6.692308e-04   p_joint 7.692308e-04

Joint ci ratio: 2.730146e-01	ci left: 6.589074e-04	ci right 8.705650e-04	k: 205	n:270000
Cons ci ratio: 2.920816e-01	ci left: 5.694222e-04	ci right 7.674771e-04	k: 179	n:270000
KS ci ratio: 1.041791e-02	ci left: 3.422006e-01	ci right 3.457879e-01	k: 92878	n:270000
CCDC103   270000 perm   74 sec   (3673 perm/sec)   p_kst 3.439926e-01   p_cons 6.629630e-04   p_joint 7.592593e-04

Joint ci ratio: 2.660033e-01	ci left: 6.720074e-04	ci right 8.814060e-04	k: 216	n:280000
Cons ci ratio: 2.857989e-01	ci left: 5.755871e-04	ci right 7.707030e-04	k: 187	n:280000
KS ci ratio: 1.023018e-02	ci left: 3.422332e-01	ci right 3.457558e-01	k: 96318	n:280000
CCDC103   280000 perm   77 sec   (3623 perm/sec)   p_kst 3.439929e-01   p_cons 6.678571e-04   p_joint 7.714286e-04

Joint ci ratio: 2.612315e-01	ci left: 6.745983e-04	ci right 8.804174e-04	k: 224	n:290000
Cons ci ratio: 2.806222e-01	ci left: 5.781632e-04	ci right 7.699746e-04	k: 194	n:290000
KS ci ratio: 1.005647e-02	ci left: 3.420746e-01	ci right 3.455354e-01	k: 99703	n:290000
CCDC103   290000 perm   81 sec   (3578 perm/sec)   p_kst 3.438034e-01   p_cons 6.689655e-04   p_joint 7.724138e-04

Joint ci ratio: 2.561580e-01	ci left: 6.801669e-04	ci right 8.830107e-04	k: 233	n:300000
Cons ci ratio: 2.757169e-01	ci left: 5.805971e-04	ci right 7.692653e-04	k: 201	n:300000
KS ci ratio: 9.883286e-03	ci left: 3.422933e-01	ci right 3.456964e-01	k: 103198	n:300000
CCDC103   300000 perm   85 sec   (3536 perm/sec)   p_kst 3.439933e-01   p_cons 6.700000e-04   p_joint 7.766667e-04

Joint ci ratio: 2.518884e-01	ci left: 6.823898e-04	ci right 8.819723e-04	k: 241	n:310000
Cons ci ratio: 2.717115e-01	ci left: 5.798948e-04	ci right 7.651302e-04	k: 207	n:310000
KS ci ratio: 9.716805e-03	ci left: 3.425886e-01	ci right 3.459369e-01	k: 106721	n:310000
CCDC103   310000 perm   89 sec   (3485 perm/sec)   p_kst 3.442613e-01   p_cons 6.677419e-04   p_joint 7.774194e-04

Joint ci ratio: 2.468392e-01	ci left: 6.903628e-04	ci right 8.876089e-04	k: 251	n:320000
Cons ci ratio: 2.666318e-01	ci left: 5.850865e-04	ci right 7.679025e-04	k: 215	n:320000
KS ci ratio: 9.566598e-03	ci left: 3.424819e-01	ci right 3.457771e-01	k: 110121	n:320000
CCDC103   320000 perm   93 sec   (3442 perm/sec)   p_kst 3.441281e-01   p_cons 6.718750e-04   p_joint 7.843750e-04

Joint ci ratio: 2.425456e-01	ci left: 6.950436e-04	ci right 8.896530e-04	k: 260	n:330000
Cons ci ratio: 2.618267e-01	ci left: 5.899937e-04	ci right 7.704769e-04	k: 223	n:330000
KS ci ratio: 9.420428e-03	ci left: 3.425123e-01	ci right 3.457571e-01	k: 113564	n:330000
CCDC103   330000 perm   97 sec   (3401 perm/sec)   p_kst 3.441333e-01   p_cons 6.757576e-04   p_joint 7.878788e-04

Joint ci ratio: 2.384685e-01	ci left: 6.994769e-04	ci right 8.915492e-04	k: 269	n:340000
Cons ci ratio: 2.583893e-01	ci left: 5.891374e-04	ci right 7.666109e-04	k: 229	n:340000
KS ci ratio: 9.281062e-03	ci left: 3.425265e-01	ci right 3.457232e-01	k: 117002	n:340000
CCDC103   340000 perm   101 sec   (3361 perm/sec)   p_kst 3.441235e-01   p_cons 6.735294e-04   p_joint 7.911765e-04

Joint ci ratio: 2.354364e-01	ci left: 6.983045e-04	ci right 8.872616e-04	k: 276	n:350000
Cons ci ratio: 2.561724e-01	ci left: 5.829963e-04	ci right 7.568721e-04	k: 233	n:350000
KS ci ratio: 9.142321e-03	ci left: 3.428057e-01	ci right 3.459569e-01	k: 120533	n:350000
CCDC103   350000 perm   105 sec   (3323 perm/sec)   p_kst 3.443800e-01   p_cons 6.657143e-04   p_joint 7.885714e-04

Joint ci ratio: 2.321085e-01	ci left: 6.998280e-04	ci right 8.861367e-04	k: 284	n:360000
Cons ci ratio: 2.529502e-01	ci left: 5.824054e-04	ci right 7.535757e-04	k: 239	n:360000
KS ci ratio: 9.020710e-03	ci left: 3.425147e-01	ci right 3.456211e-01	k: 123864	n:360000
CCDC103   360000 perm   110 sec   (3283 perm/sec)   p_kst 3.440667e-01   p_cons 6.638889e-04   p_joint 7.888889e-04

Joint ci ratio: 2.300998e-01	ci left: 6.936446e-04	ci right 8.764820e-04	k: 289	n:370000
Cons ci ratio: 2.508692e-01	ci left: 5.767928e-04	ci right 7.447010e-04	k: 243	n:370000
KS ci ratio: 8.901262e-03	ci left: 3.423693e-01	ci right 3.454331e-01	k: 127243	n:370000
CCDC103   370000 perm   114 sec   (3242 perm/sec)   p_kst 3.439000e-01   p_cons 6.567568e-04   p_joint 7.810811e-04

Joint ci ratio: 2.277563e-01	ci left: 6.902747e-04	ci right 8.701103e-04	k: 295	n:380000
Cons ci ratio: 2.478407e-01	ci left: 5.764169e-04	ci right 7.418778e-04	k: 249	n:380000
KS ci ratio: 8.785666e-03	ci left: 3.422713e-01	ci right 3.452942e-01	k: 130637	n:380000
CCDC103   380000 perm   119 sec   (3200 perm/sec)   p_kst 3.437816e-01   p_cons 6.552632e-04   p_joint 7.763158e-04

Joint ci ratio: 2.247395e-01	ci left: 6.919257e-04	ci right 8.694731e-04	k: 303	n:390000
Cons ci ratio: 2.439675e-01	ci left: 5.808860e-04	ci right 7.446293e-04	k: 257	n:390000
KS ci ratio: 8.673818e-03	ci left: 3.422119e-01	ci right 3.451956e-01	k: 134044	n:390000
CCDC103   390000 perm   123 sec   (3161 perm/sec)   p_kst 3.437026e-01   p_cons 6.589744e-04   p_joint 7.769231e-04

Joint ci ratio: 2.232764e-01	ci left: 6.840662e-04	ci right 8.582969e-04	k: 307	n:400000
Cons ci ratio: 2.420988e-01	ci left: 5.757547e-04	ci right 7.366217e-04	k: 261	n:400000
KS ci ratio: 8.569032e-03	ci left: 3.420033e-01	ci right 3.449490e-01	k: 137390	n:400000
CCDC103   400000 perm   128 sec   (3122 perm/sec)   p_kst 3.434750e-01   p_cons 6.525000e-04   p_joint 7.675000e-04

Joint ci ratio: 2.204320e-01	ci left: 6.858097e-04	ci right 8.579575e-04	k: 315	n:410000
Cons ci ratio: 2.398217e-01	ci left: 5.731707e-04	ci right 7.315854e-04	k: 266	n:410000
KS ci ratio: 8.462732e-03	ci left: 3.420829e-01	ci right 3.449925e-01	k: 140850	n:410000
CCDC103   410000 perm   133 sec   (3084 perm/sec)   p_kst 3.435366e-01   p_cons 6.487805e-04   p_joint 7.682927e-04

Joint ci ratio: 2.193942e-01	ci left: 6.762299e-04	ci right 8.450661e-04	k: 318	n:420000
Cons ci ratio: 2.393754e-01	ci left: 5.617614e-04	ci right 7.166910e-04	k: 267	n:420000
KS ci ratio: 8.363117e-03	ci left: 3.420066e-01	ci right 3.448812e-01	k: 144246	n:420000
CCDC103   420000 perm   138 sec   (3048 perm/sec)   p_kst 3.434429e-01   p_cons 6.357143e-04   p_joint 7.571429e-04

Joint ci ratio: 2.176955e-01	ci left: 6.714949e-04	ci right 8.376771e-04	k: 323	n:430000
Cons ci ratio: 2.371736e-01	ci left: 5.596309e-04	ci right 7.123446e-04	k: 272	n:430000
KS ci ratio: 8.264509e-03	ci left: 3.420666e-01	ci right 3.449076e-01	k: 147699	n:430000
CCDC103   430000 perm   143 sec   (3012 perm/sec)   p_kst 3.434860e-01   p_cons 6.325581e-04   p_joint 7.511628e-04

Joint ci ratio: 2.170280e-01	ci left: 6.605312e-04	ci right 8.234321e-04	k: 325	n:440000
Cons ci ratio: 2.363107e-01	ci left: 5.511875e-04	ci right 7.009700e-04	k: 274	n:440000
KS ci ratio: 8.172397e-03	ci left: 3.419537e-01	ci right 3.447620e-01	k: 151077	n:440000
CCDC103   440000 perm   148 sec   (2976 perm/sec)   p_kst 3.433568e-01   p_cons 6.227273e-04   p_joint 7.386364e-04

Joint ci ratio: 2.125113e-01	ci left: 6.752912e-04	ci right 8.379147e-04	k: 339	n:450000
Cons ci ratio: 2.329463e-01	ci left: 5.556719e-04	ci right 7.042136e-04	k: 282	n:450000
KS ci ratio: 8.077204e-03	ci left: 3.421857e-01	ci right 3.449630e-01	k: 154608	n:450000
CCDC103   450000 perm   153 sec   (2941 perm/sec)   p_kst 3.435733e-01   p_cons 6.266667e-04   p_joint 7.533333e-04

Joint ci ratio: 2.106610e-01	ci left: 6.729632e-04	ci right 8.334329e-04	k: 345	n:460000
Cons ci ratio: 2.305155e-01	ci left: 5.558784e-04	ci right 7.027039e-04	k: 288	n:460000
KS ci ratio: 7.986030e-03	ci left: 3.423643e-01	ci right 3.451116e-01	k: 158119	n:460000
CCDC103   460000 perm   158 sec   (2907 perm/sec)   p_kst 3.437370e-01   p_cons 6.260870e-04   p_joint 7.500000e-04

Joint ci ratio: 2.091558e-01	ci left: 6.687238e-04	ci right 8.268973e-04	k: 350	n:470000
Cons ci ratio: 2.289372e-01	ci left: 5.520719e-04	ci right 6.967525e-04	k: 292	n:470000
KS ci ratio: 7.898283e-03	ci left: 3.425121e-01	ci right 3.452302e-01	k: 161619	n:470000
CCDC103   470000 perm   164 sec   (2873 perm/sec)   p_kst 3.438702e-01   p_cons 6.212766e-04   p_joint 7.446809e-04

Joint ci ratio: 2.059527e-01	ci left: 6.765180e-04	ci right 8.337759e-04	k: 361	n:480000
Cons ci ratio: 2.251268e-01	ci left: 5.602193e-04	ci right 7.042526e-04	k: 302	n:480000
KS ci ratio: 7.813582e-03	ci left: 3.426415e-01	ci right 3.453313e-01	k: 165113	n:480000
CCDC103   480000 perm   169 sec   (2841 perm/sec)   p_kst 3.439854e-01   p_cons 6.291667e-04   p_joint 7.520833e-04

Joint ci ratio: 2.031652e-01	ci left: 6.820746e-04	ci right 8.382119e-04	k: 371	n:490000
Cons ci ratio: 2.215005e-01	ci left: 5.680532e-04	ci right 7.114275e-04	k: 312	n:490000
KS ci ratio: 7.735920e-03	ci left: 3.425108e-01	ci right 3.451727e-01	k: 168482	n:490000
CCDC103   490000 perm   174 sec   (2810 perm/sec)   p_kst 3.438408e-01   p_cons 6.367347e-04   p_joint 7.571429e-04

Joint ci ratio: 2.007510e-01	ci left: 6.855230e-04	ci right 8.403565e-04	k: 380	n:500000
Cons ci ratio: 2.183825e-01	ci left: 5.737008e-04	ci right 7.161887e-04	k: 321	n:500000
KS ci ratio: 7.657777e-03	ci left: 3.425473e-01	ci right 3.451825e-01	k: 171932	n:500000
CCDC103   500000 perm   180 sec   (2779 perm/sec)   p_kst 3.438640e-01   p_cons 6.420000e-04   p_joint 7.600000e-04

Joint ci ratio: 1.986759e-01	ci left: 6.869833e-04	ci right 8.403485e-04	k: 388	n:510000
Cons ci ratio: 2.157189e-01	ci left: 5.772855e-04	ci right 7.186833e-04	k: 329	n:510000
KS ci ratio: 7.581791e-03	ci left: 3.425923e-01	ci right 3.452016e-01	k: 175387	n:510000
CCDC103   510000 perm   186 sec   (2749 perm/sec)   p_kst 3.438961e-01   p_cons 6.450980e-04   p_joint 7.607843e-04

Joint ci ratio: 1.961700e-01	ci left: 6.920525e-04	ci right 8.443678e-04	k: 398	n:520000
Cons ci ratio: 2.131504e-01	ci left: 5.807424e-04	ci right 7.210719e-04	k: 337	n:520000
KS ci ratio: 7.508215e-03	ci left: 3.426242e-01	ci right 3.452083e-01	k: 178836	n:520000
CCDC103   520000 perm   191 sec   (2717 perm/sec)   p_kst 3.439154e-01   p_cons 6.480769e-04   p_joint 7.653846e-04

Joint ci ratio: 1.944716e-01	ci left: 6.915566e-04	ci right 8.422890e-04	k: 405	n:530000
Cons ci ratio: 2.119007e-01	ci left: 5.769303e-04	ci right 7.154153e-04	k: 341	n:530000
KS ci ratio: 7.436273e-03	ci left: 3.426833e-01	ci right 3.452429e-01	k: 182300	n:530000
CCDC103   530000 perm   197 sec   (2688 perm/sec)   p_kst 3.439623e-01   p_cons 6.433962e-04   p_joint 7.641509e-04

Joint ci ratio: 1.923511e-01	ci left: 6.946097e-04	ci right 8.441637e-04	k: 414	n:540000
Cons ci ratio: 2.094647e-01	ci left: 5.802798e-04	ci right 7.177620e-04	k: 349	n:540000
KS ci ratio: 7.370715e-03	ci left: 3.424739e-01	ci right 3.450093e-01	k: 185620	n:540000
CCDC103   540000 perm   203 sec   (2660 perm/sec)   p_kst 3.437407e-01   p_cons 6.462963e-04   p_joint 7.666667e-04

Joint ci ratio: 1.912032e-01	ci left: 6.906347e-04	ci right 8.383423e-04	k: 419	n:550000
Cons ci ratio: 2.085734e-01	ci left: 5.748981e-04	ci right 7.104517e-04	k: 352	n:550000
KS ci ratio: 7.304238e-03	ci left: 3.424338e-01	ci right 3.449460e-01	k: 189029	n:550000
CCDC103   550000 perm   209 sec   (2633 perm/sec)   p_kst 3.436891e-01   p_cons 6.400000e-04   p_joint 7.618182e-04

Joint ci ratio: 1.896296e-01	ci left: 6.902061e-04	ci right 8.364671e-04	k: 426	n:560000
Cons ci ratio: 2.068232e-01	ci left: 5.747891e-04	ci right 7.090358e-04	k: 358	n:560000
KS ci ratio: 7.238725e-03	ci left: 3.424453e-01	ci right 3.449349e-01	k: 192466	n:560000
CCDC103   560000 perm   215 sec   (2607 perm/sec)   p_kst 3.436893e-01   p_cons 6.392857e-04   p_joint 7.607143e-04

Joint ci ratio: 1.863829e-01	ci left: 7.031750e-04	ci right 8.493445e-04	k: 441	n:570000
Cons ci ratio: 2.034498e-01	ci left: 5.846767e-04	ci right 7.187287e-04	k: 370	n:570000
KS ci ratio: 7.175782e-03	ci left: 3.424038e-01	ci right 3.448714e-01	k: 195873	n:570000
CCDC103   570000 perm   221 sec   (2583 perm/sec)   p_kst 3.436368e-01   p_cons 6.491228e-04   p_joint 7.736842e-04

Joint ci ratio: 1.853380e-01	ci left: 6.992707e-04	ci right 8.437222e-04	k: 446	n:580000
Cons ci ratio: 2.020929e-01	ci left: 5.827790e-04	ci right 7.153947e-04	k: 375	n:580000
KS ci ratio: 7.113201e-03	ci left: 3.424432e-01	ci right 3.448894e-01	k: 199326	n:580000
CCDC103   580000 perm   227 sec   (2560 perm/sec)   p_kst 3.436655e-01   p_cons 6.465517e-04   p_joint 7.689655e-04

Joint ci ratio: 1.834997e-01	ci left: 7.019688e-04	ci right 8.453794e-04	k: 455	n:590000
Cons ci ratio: 1.999764e-01	ci left: 5.857783e-04	ci right 7.175102e-04	k: 383	n:590000
KS ci ratio: 7.053342e-03	ci left: 3.424101e-01	ci right 3.448355e-01	k: 202737	n:590000
CCDC103   590000 perm   233 sec   (2537 perm/sec)   p_kst 3.436220e-01   p_cons 6.491525e-04   p_joint 7.711864e-04

Joint ci ratio: 1.821074e-01	ci left: 7.014021e-04	ci right 8.434897e-04	k: 462	n:600000
Cons ci ratio: 1.984322e-01	ci left: 5.855165e-04	ci right 7.160498e-04	k: 389	n:600000
KS ci ratio: 6.994866e-03	ci left: 3.423849e-01	ci right 3.447899e-01	k: 206152	n:600000
CCDC103   600000 perm   239 sec   (2513 perm/sec)   p_kst 3.435867e-01   p_cons 6.483333e-04   p_joint 7.700000e-04

Joint ci ratio: 1.809390e-01	ci left: 6.992928e-04	ci right 8.399446e-04	k: 468	n:610000
Cons ci ratio: 1.976740e-01	ci left: 5.805919e-04	ci right 7.094731e-04	k: 392	n:610000
KS ci ratio: 6.937619e-03	ci left: 3.423738e-01	ci right 3.447589e-01	k: 209575	n:610000
CCDC103   610000 perm   245 sec   (2490 perm/sec)   p_kst 3.435656e-01   p_cons 6.426230e-04   p_joint 7.672131e-04

Joint ci ratio: 1.799826e-01	ci left: 6.957140e-04	ci right 8.348257e-04	k: 473	n:620000
Cons ci ratio: 1.966760e-01	ci left: 5.773605e-04	ci right 7.047999e-04	k: 396	n:620000
KS ci ratio: 6.882567e-03	ci left: 3.423098e-01	ci right 3.446755e-01	k: 212965	n:620000
CCDC103   620000 perm   252 sec   (2465 perm/sec)   p_kst 3.434919e-01   p_cons 6.387097e-04   p_joint 7.629032e-04

Joint ci ratio: 1.782976e-01	ci left: 6.983161e-04	ci right 8.365000e-04	k: 482	n:630000
Cons ci ratio: 1.952065e-01	ci left: 5.772527e-04	ci right 7.036030e-04	k: 402	n:630000
KS ci ratio: 6.826594e-03	ci left: 3.423939e-01	ci right 3.447409e-01	k: 216447	n:630000
CCDC103   630000 perm   258 sec   (2441 perm/sec)   p_kst 3.435667e-01   p_cons 6.380952e-04   p_joint 7.650794e-04

Joint ci ratio: 1.772007e-01	ci left: 6.963628e-04	ci right 8.332215e-04	k: 488	n:640000
Cons ci ratio: 1.937694e-01	ci left: 5.771516e-04	ci right 7.024402e-04	k: 408	n:640000
KS ci ratio: 6.773959e-03	ci left: 3.423427e-01	ci right 3.446712e-01	k: 219844	n:640000
CCDC103   640000 perm   264 sec   (2420 perm/sec)   p_kst 3.435063e-01   p_cons 6.375000e-04   p_joint 7.625000e-04

Joint ci ratio: 1.761237e-01	ci left: 6.944720e-04	ci right 8.300413e-04	k: 494	n:650000
Cons ci ratio: 1.925960e-01	ci left: 5.755926e-04	ci right 6.996973e-04	k: 413	n:650000
KS ci ratio: 6.722018e-03	ci left: 3.423270e-01	ci right 3.446374e-01	k: 223263	n:650000
CCDC103   650000 perm   271 sec   (2398 perm/sec)   p_kst 3.434815e-01   p_cons 6.353846e-04   p_joint 7.600000e-04

Joint ci ratio: 1.748915e-01	ci left: 6.940899e-04	ci right 8.285364e-04	k: 501	n:660000
Cons ci ratio: 1.914436e-01	ci left: 5.740830e-04	ci right 6.970354e-04	k: 418	n:660000
KS ci ratio: 6.671949e-03	ci left: 3.422649e-01	ci right 3.445576e-01	k: 226651	n:660000
CCDC103   660000 perm   278 sec   (2377 perm/sec)   p_kst 3.434106e-01   p_cons 6.333333e-04   p_joint 7.590909e-04

Joint ci ratio: 1.738558e-01	ci left: 6.922946e-04	ci right 8.255160e-04	k: 507	n:670000
Cons ci ratio: 1.903116e-01	ci left: 5.726206e-04	ci right 6.944509e-04	k: 423	n:670000
KS ci ratio: 6.623114e-03	ci left: 3.421958e-01	ci right 3.444712e-01	k: 230033	n:670000
CCDC103   670000 perm   284 sec   (2358 perm/sec)   p_kst 3.433328e-01   p_cons 6.313433e-04   p_joint 7.567164e-04

Joint ci ratio: 1.730068e-01	ci left: 6.891475e-04	ci right 8.210480e-04	k: 512	n:680000
Cons ci ratio: 1.891995e-01	ci left: 5.712033e-04	ci right 6.919402e-04	k: 428	n:680000
KS ci ratio: 6.575593e-03	ci left: 3.421112e-01	ci right 3.443696e-01	k: 233403	n:680000
CCDC103   680000 perm   291 sec   (2338 perm/sec)   p_kst 3.432397e-01   p_cons 6.294118e-04   p_joint 7.529412e-04

Joint ci ratio: 1.715087e-01	ci left: 6.916411e-04	ci right 8.227539e-04	k: 521	n:690000
Cons ci ratio: 1.876745e-01	ci left: 5.725914e-04	ci right 6.925350e-04	k: 435	n:690000
KS ci ratio: 6.527253e-03	ci left: 3.421550e-01	ci right 3.443970e-01	k: 236860	n:690000
CCDC103   690000 perm   298 sec   (2318 perm/sec)   p_kst 3.432754e-01   p_cons 6.304348e-04   p_joint 7.550725e-04

Joint ci ratio: 1.706935e-01	ci left: 6.885974e-04	ci right 8.184489e-04	k: 526	n:700000
Cons ci ratio: 1.866077e-01	ci left: 5.712198e-04	ci right 6.901188e-04	k: 440	n:700000
KS ci ratio: 6.480232e-03	ci left: 3.421791e-01	ci right 3.444051e-01	k: 240304	n:700000
CCDC103   700000 perm   305 sec   (2298 perm/sec)   p_kst 3.432914e-01   p_cons 6.285714e-04   p_joint 7.514286e-04

Joint ci ratio: 1.690964e-01	ci left: 6.923846e-04	ci right 8.216041e-04	k: 536	n:710000
Cons ci ratio: 1.845268e-01	ci left: 5.766048e-04	ci right 6.951367e-04	k: 450	n:710000
KS ci ratio: 6.434514e-03	ci left: 3.421814e-01	ci right 3.443917e-01	k: 243733	n:710000
CCDC103   710000 perm   312 sec   (2278 perm/sec)   p_kst 3.432859e-01   p_cons 6.338028e-04   p_joint 7.549296e-04

Joint ci ratio: 1.684705e-01	ci left: 6.880889e-04	ci right 8.159831e-04	k: 540	n:720000
Cons ci ratio: 1.837142e-01	ci left: 5.738958e-04	ci right 6.912934e-04	k: 454	n:720000
KS ci ratio: 6.389887e-03	ci left: 3.421741e-01	ci right 3.443689e-01	k: 247155	n:720000
CCDC103   720000 perm   319 sec   (2258 perm/sec)   p_kst 3.432708e-01   p_cons 6.305556e-04   p_joint 7.500000e-04

Joint ci ratio: 1.673911e-01	ci left: 6.878490e-04	ci right 8.147970e-04	k: 547	n:730000
Cons ci ratio: 1.827132e-01	ci left: 5.725694e-04	ci right 6.889868e-04	k: 459	n:730000
KS ci ratio: 6.344981e-03	ci left: 3.422518e-01	ci right 3.444316e-01	k: 250639	n:730000
CCDC103   730000 perm   326 sec   (2239 perm/sec)   p_kst 3.433411e-01   p_cons 6.287671e-04   p_joint 7.493151e-04

Joint ci ratio: 1.663322e-01	ci left: 6.876182e-04	ci right 8.136403e-04	k: 554	n:740000
Cons ci ratio: 1.815332e-01	ci left: 5.725704e-04	ci right 6.881535e-04	k: 465	n:740000
KS ci ratio: 6.299725e-03	ci left: 3.424193e-01	ci right 3.445846e-01	k: 254191	n:740000
CCDC103   740000 perm   333 sec   (2222 perm/sec)   p_kst 3.435014e-01   p_cons 6.283784e-04   p_joint 7.486486e-04

Joint ci ratio: 1.654405e-01	ci left: 6.861178e-04	ci right 8.111237e-04	k: 560	n:750000
Cons ci ratio: 1.805672e-01	ci left: 5.713007e-04	ci right 6.859467e-04	k: 470	n:750000
KS ci ratio: 6.257624e-03	ci left: 3.424239e-01	ci right 3.445747e-01	k: 257624	n:750000
CCDC103   750000 perm   340 sec   (2204 perm/sec)   p_kst 3.434987e-01   p_cons 6.266667e-04   p_joint 7.466667e-04

Joint ci ratio: 1.641290e-01	ci left: 6.884437e-04	ci right 8.127810e-04	k: 569	n:760000
Cons ci ratio: 1.792401e-01	ci left: 5.725794e-04	ci right 6.865459e-04	k: 477	n:760000
KS ci ratio: 6.215974e-03	ci left: 3.424560e-01	ci right 3.445926e-01	k: 261078	n:760000
CCDC103   760000 perm   348 sec   (2187 perm/sec)   p_kst 3.435237e-01   p_cons 6.276316e-04   p_joint 7.486842e-04

Joint ci ratio: 1.631305e-01	ci left: 6.882215e-04	ci right 8.116882e-04	k: 576	n:770000
Cons ci ratio: 1.781257e-01	ci left: 5.725870e-04	ci right 6.857701e-04	k: 483	n:770000
KS ci ratio: 6.175803e-03	ci left: 3.424393e-01	ci right 3.445619e-01	k: 264495	n:770000
CCDC103   770000 perm   355 sec   (2170 perm/sec)   p_kst 3.435000e-01   p_cons 6.272727e-04   p_joint 7.480519e-04

Joint ci ratio: 1.621499e-01	ci left: 6.880073e-04	ci right 8.106213e-04	k: 583	n:780000
Cons ci ratio: 1.770318e-01	ci left: 5.725965e-04	ci right 6.850120e-04	k: 489	n:780000
KS ci ratio: 6.137658e-03	ci left: 3.423308e-01	ci right 3.444396e-01	k: 267840	n:780000
CCDC103   780000 perm   363 sec   (2151 perm/sec)   p_kst 3.433846e-01   p_cons 6.269231e-04   p_joint 7.474359e-04

Joint ci ratio: 1.613235e-01	ci left: 6.865858e-04	ci right 8.082624e-04	k: 589	n:790000
Cons ci ratio: 1.759578e-01	ci left: 5.726079e-04	ci right 6.842711e-04	k: 495	n:790000
KS ci ratio: 6.099439e-03	ci left: 3.422820e-01	ci right 3.443774e-01	k: 271230	n:790000
CCDC103   790000 perm   371 sec   (2131 perm/sec)   p_kst 3.433291e-01   p_cons 6.265823e-04   p_joint 7.455696e-04

Joint ci ratio: 1.601068e-01	ci left: 6.888011e-04	ci right 8.098611e-04	k: 598	n:800000
Cons ci ratio: 1.745556e-01	ci left: 5.750117e-04	ci right 6.861558e-04	k: 503	n:800000
KS ci ratio: 6.060497e-03	ci left: 3.423407e-01	ci right 3.444230e-01	k: 274705	n:800000
CCDC103   800000 perm   379 sec   (2113 perm/sec)   p_kst 3.433813e-01   p_cons 6.287500e-04   p_joint 7.475000e-04

Joint ci ratio: 1.591794e-01	ci left: 6.885941e-04	ci right 8.088498e-04	k: 605	n:810000
Cons ci ratio: 1.736962e-01	ci left: 5.738166e-04	ci right 6.841264e-04	k: 508	n:810000
KS ci ratio: 6.023775e-03	ci left: 3.422869e-01	ci right 3.443562e-01	k: 278090	n:810000
CCDC103   810000 perm   386 sec   (2097 perm/sec)   p_kst 3.433210e-01   p_cons 6.271605e-04   p_joint 7.469136e-04

Joint ci ratio: 1.585270e-01	ci left: 6.860517e-04	ci right 8.053256e-04	k: 610	n:820000
Cons ci ratio: 1.728495e-01	ci left: 5.726519e-04	ci right 6.821452e-04	k: 513	n:820000
KS ci ratio: 5.985657e-03	ci left: 3.423892e-01	ci right 3.444460e-01	k: 281602	n:820000
CCDC103   820000 perm   394 sec   (2082 perm/sec)   p_kst 3.434171e-01   p_cons 6.256098e-04   p_joint 7.439024e-04

Joint ci ratio: 1.571187e-01	ci left: 6.905158e-04	ci right 8.093987e-04	k: 621	n:830000
Cons ci ratio: 1.711918e-01	ci left: 5.772821e-04	ci right 6.864929e-04	k: 523	n:830000
KS ci ratio: 5.949906e-03	ci left: 3.423639e-01	ci right 3.444082e-01	k: 285010	n:830000
CCDC103   830000 perm   401 sec   (2067 perm/sec)   p_kst 3.433855e-01   p_cons 6.301205e-04   p_joint 7.481928e-04

Joint ci ratio: 1.563665e-01	ci left: 6.891580e-04	ci right 8.071859e-04	k: 627	n:840000
Cons ci ratio: 1.702201e-01	ci left: 5.772474e-04	ci right 6.857681e-04	k: 529	n:840000
KS ci ratio: 5.915475e-03	ci left: 3.422869e-01	ci right 3.443189e-01	k: 288374	n:840000
CCDC103   840000 perm   409 sec   (2052 perm/sec)   p_kst 3.433024e-01   p_cons 6.297619e-04   p_joint 7.464286e-04

Joint ci ratio: 1.551359e-01	ci left: 6.923565e-04	ci right 8.099123e-04	k: 637	n:850000
Cons ci ratio: 1.687927e-01	ci left: 5.805953e-04	ci right 6.887371e-04	k: 538	n:850000
KS ci ratio: 5.880069e-03	ci left: 3.423317e-01	ci right 3.443517e-01	k: 291840	n:850000
CCDC103   850000 perm   417 sec   (2037 perm/sec)   p_kst 3.433412e-01   p_cons 6.329412e-04   p_joint 7.494118e-04

Joint ci ratio: 1.542919e-01	ci left: 6.921303e-04	ci right 8.089491e-04	k: 644	n:860000
Cons ci ratio: 1.680154e-01	ci left: 5.794131e-04	ci right 6.867873e-04	k: 543	n:860000
KS ci ratio: 5.845714e-03	ci left: 3.423429e-01	ci right 3.443512e-01	k: 295278	n:860000
CCDC103   860000 perm   425 sec   (2021 perm/sec)   p_kst 3.433465e-01   p_cons 6.313953e-04   p_joint 7.488372e-04

Joint ci ratio: 1.531093e-01	ci left: 6.952270e-04	ci right 8.115868e-04	k: 654	n:870000
Cons ci ratio: 1.667932e-01	ci left: 5.815634e-04	ci right 6.884735e-04	k: 551	n:870000
KS ci ratio: 5.812694e-03	ci left: 3.422965e-01	ci right 3.442931e-01	k: 298666	n:870000
CCDC103   870000 perm   434 sec   (2005 perm/sec)   p_kst 3.432943e-01   p_cons 6.333333e-04   p_joint 7.517241e-04

Joint ci ratio: 1.526442e-01	ci left: 6.916982e-04	ci right 8.070835e-04	k: 658	n:880000
Cons ci ratio: 1.663422e-01	ci left: 5.782216e-04	ci right 6.842011e-04	k: 554	n:880000
KS ci ratio: 5.778975e-03	ci left: 3.423488e-01	ci right 3.443341e-01	k: 302140	n:880000
CCDC103   880000 perm   442 sec   (1989 perm/sec)   p_kst 3.433409e-01   p_cons 6.295455e-04   p_joint 7.477273e-04

Joint ci ratio: 1.521834e-01	ci left: 6.882492e-04	ci right 8.026809e-04	k: 662	n:890000
Cons ci ratio: 1.657462e-01	ci left: 5.760323e-04	ci right 6.811945e-04	k: 558	n:890000
KS ci ratio: 5.746996e-03	ci left: 3.423090e-01	ci right 3.442830e-01	k: 305533	n:890000
CCDC103   890000 perm   451 sec   (1974 perm/sec)   p_kst 3.432955e-01   p_cons 6.269663e-04   p_joint 7.438202e-04

Joint ci ratio: 1.514995e-01	ci left: 6.870153e-04	ci right 8.006821e-04	k: 668	n:900000
Cons ci ratio: 1.650100e-01	ci left: 5.749576e-04	ci right 6.794110e-04	k: 563	n:900000
KS ci ratio: 5.715035e-03	ci left: 3.423101e-01	ci right 3.442731e-01	k: 308962	n:900000
CCDC103   900000 perm   459 sec   (1960 perm/sec)   p_kst 3.432911e-01   p_cons 6.255556e-04   p_joint 7.422222e-04

Joint ci ratio: 1.503796e-01	ci left: 6.900398e-04	ci right 8.032870e-04	k: 678	n:910000
Cons ci ratio: 1.639953e-01	ci left: 5.760150e-04	ci right 6.799536e-04	k: 570	n:910000
KS ci ratio: 5.684696e-03	ci left: 3.422245e-01	ci right 3.441765e-01	k: 312312	n:910000
CCDC103   910000 perm   468 sec   (1945 perm/sec)   p_kst 3.432000e-01   p_cons 6.263736e-04   p_joint 7.450549e-04

Joint ci ratio: 1.491758e-01	ci left: 6.940479e-04	ci right 8.069598e-04	k: 689	n:920000
Cons ci ratio: 1.627177e-01	ci left: 5.791367e-04	ci right 6.827449e-04	k: 579	n:920000
KS ci ratio: 5.654698e-03	ci left: 3.421516e-01	ci right 3.440929e-01	k: 315672	n:920000
CCDC103   920000 perm   477 sec   (1930 perm/sec)   p_kst 3.431217e-01   p_cons 6.293478e-04   p_joint 7.489130e-04

Joint ci ratio: 1.485315e-01	ci left: 6.927963e-04	ci right 8.049746e-04	k: 695	n:930000
Cons ci ratio: 1.620210e-01	ci left: 5.780673e-04	ci right 6.809982e-04	k: 584	n:930000
KS ci ratio: 5.625063e-03	ci left: 3.420889e-01	ci right 3.440196e-01	k: 319040	n:930000
CCDC103   930000 perm   485 sec   (1916 perm/sec)   p_kst 3.430538e-01   p_cons 6.279570e-04   p_joint 7.473118e-04

Joint ci ratio: 1.477902e-01	ci left: 6.925969e-04	ci right 8.041337e-04	k: 702	n:940000
Cons ci ratio: 1.610602e-01	ci left: 5.790635e-04	ci right 6.815011e-04	k: 591	n:940000
KS ci ratio: 5.595585e-03	ci left: 3.420520e-01	ci right 3.439724e-01	k: 322431	n:940000
CCDC103   940000 perm   494 sec   (1902 perm/sec)   p_kst 3.430117e-01   p_cons 6.287234e-04   p_joint 7.468085e-04

Joint ci ratio: 1.469564e-01	ci left: 6.934169e-04	ci right 8.044005e-04	k: 710	n:950000
Cons ci ratio: 1.602502e-01	ci left: 5.790299e-04	ci right 6.808969e-04	k: 597	n:950000
KS ci ratio: 5.565161e-03	ci left: 3.421295e-01	ci right 3.440399e-01	k: 325930	n:950000
CCDC103   950000 perm   503 sec   (1889 perm/sec)   p_kst 3.430842e-01   p_cons 6.284211e-04   p_joint 7.473684e-04

Joint ci ratio: 1.137562e-01	ci left: 1.165126e-03	ci right 1.306661e-03	k: 1185	n:960000
Cons ci ratio: 1.584060e-01	ci left: 5.870005e-04	ci right 6.889683e-04	k: 611	n:960000
KS ci ratio: 5.536073e-03	ci left: 3.421368e-01	ci right 3.440371e-01	k: 329363	n:960000
CCDC103   960000 perm   512 sec   (1874 perm/sec)   p_kst 3.430865e-01   p_cons 6.364583e-04   p_joint 1.234375e-03

Joint ci ratio: 1.452303e-01	ci left: 6.960049e-04	ci right 8.059807e-04	k: 727	n:970000
Cons ci ratio: 1.580195e-01	ci left: 5.839192e-04	ci right 6.850807e-04	k: 614	n:970000
KS ci ratio: 5.508116e-03	ci left: 3.420882e-01	ci right 3.439787e-01	k: 332742	n:970000
CCDC103   970000 perm   521 sec   (1862 perm/sec)   p_kst 3.430330e-01   p_cons 6.329897e-04   p_joint 7.494845e-04

Joint ci ratio: 1.124829e-01	ci left: 1.168119e-03	ci right 1.308325e-03	k: 1212	n:980000
Cons ci ratio: 1.568755e-01	ci left: 5.867827e-04	ci right 6.876352e-04	k: 623	n:980000
KS ci ratio: 5.479474e-03	ci left: 3.421315e-01	ci right 3.440123e-01	k: 336210	n:980000
CCDC103   980000 perm   530 sec   (1850 perm/sec)   p_kst 3.430714e-01   p_cons 6.357143e-04   p_joint 1.236735e-03

Joint ci ratio: 1.198853e-01	ci left: 1.014103e-03	ci right 1.144400e-03	k: 1067	n:990000
Cons ci ratio: 1.565001e-01	ci left: 5.837670e-04	ci right 6.838386e-04	k: 626	n:990000
KS ci ratio: 5.451103e-03	ci left: 3.421880e-01	ci right 3.440594e-01	k: 339692	n:990000
CCDC103   990000 perm   539 sec   (1837 perm/sec)   p_kst 3.431232e-01   p_cons 6.323232e-04   p_joint 1.077778e-03

Joint ci ratio: 1.188324e-01	ci left: 1.022395e-03	ci right 1.152523e-03	k: 1086	n:1000000
Cons ci ratio: 1.552665e-01	ci left: 5.875394e-04	ci right 6.873898e-04	k: 636	n:1000000
KS ci ratio: 5.423144e-03	ci left: 3.422454e-01	ci right 3.441075e-01	k: 343176	n:1000000
CCDC103   1000000 perm   548 sec   (1824 perm/sec)   p_kst 3.431760e-01   p_cons 6.360000e-04   p_joint 1.086000e-03

Joint ci ratio: 1.180206e-01	ci left: 1.026684e-03	ci right 1.156403e-03	k: 1101	n:1010000
Cons ci ratio: 1.541809e-01	ci left: 5.902881e-04	ci right 6.898395e-04	k: 645	n:1010000
KS ci ratio: 5.395588e-03	ci left: 3.423037e-01	ci right 3.441566e-01	k: 346662	n:1010000
CCDC103   1010000 perm   558 sec   (1812 perm/sec)   p_kst 3.432297e-01   p_cons 6.386139e-04   p_joint 1.090099e-03

Joint ci ratio: 1.413054e-01	ci left: 7.006426e-04	ci right 8.081074e-04	k: 768	n:1020000
Cons ci ratio: 1.538244e-01	ci left: 5.873288e-04	ci right 6.861309e-04	k: 648	n:1020000
KS ci ratio: 5.369509e-03	ci left: 3.422717e-01	ci right 3.441154e-01	k: 350057	n:1020000
CCDC103   1020000 perm   567 sec   (1800 perm/sec)   p_kst 3.431931e-01   p_cons 6.352941e-04   p_joint 7.529412e-04

Joint ci ratio: 1.405761e-01	ci left: 7.013334e-04	ci right 8.083024e-04	k: 776	n:1030000
Cons ci ratio: 1.531183e-01	ci left: 5.872281e-04	ci right 6.855182e-04	k: 654	n:1030000
KS ci ratio: 5.342643e-03	ci left: 3.423384e-01	ci right 3.441732e-01	k: 353553	n:1030000
CCDC103   1030000 perm   576 sec   (1788 perm/sec)   p_kst 3.432553e-01   p_cons 6.349515e-04   p_joint 7.533981e-04

Joint ci ratio: 1.398579e-01	ci left: 7.020123e-04	ci right 8.084922e-04	k: 784	n:1040000
Cons ci ratio: 1.523066e-01	ci left: 5.880553e-04	ci right 6.859144e-04	k: 661	n:1040000
KS ci ratio: 5.316675e-03	ci left: 3.423615e-01	ci right 3.441875e-01	k: 357005	n:1040000
CCDC103   1040000 perm   585 sec   (1777 perm/sec)   p_kst 3.432740e-01   p_cons 6.355769e-04   p_joint 7.538462e-04

Joint ci ratio: 1.390629e-01	ci left: 7.035989e-04	ci right 8.096626e-04	k: 793	n:1050000
Cons ci ratio: 1.515076e-01	ci left: 5.888680e-04	ci right 6.863018e-04	k: 668	n:1050000
KS ci ratio: 5.291484e-03	ci left: 3.423499e-01	ci right 3.441672e-01	k: 360421	n:1050000
CCDC103   1050000 perm   595 sec   (1766 perm/sec)   p_kst 3.432581e-01   p_cons 6.361905e-04   p_joint 7.552381e-04

Joint ci ratio: 1.384540e-01	ci left: 7.033357e-04	ci right 8.088571e-04	k: 800	n:1060000
Cons ci ratio: 1.507211e-01	ci left: 5.896667e-04	ci right 6.866805e-04	k: 675	n:1060000
KS ci ratio: 5.265689e-03	ci left: 3.424206e-01	ci right 3.442293e-01	k: 363924	n:1060000
CCDC103   1060000 perm   604 sec   (1754 perm/sec)   p_kst 3.433245e-01   p_cons 6.367925e-04   p_joint 7.547170e-04

Joint ci ratio: 1.378530e-01	ci left: 7.030784e-04	ci right 8.080658e-04	k: 807	n:1070000
Cons ci ratio: 1.500566e-01	ci left: 5.895523e-04	ci right 6.860813e-04	k: 681	n:1070000
KS ci ratio: 5.240713e-03	ci left: 3.424517e-01	ci right 3.442520e-01	k: 367386	n:1070000
CCDC103   1070000 perm   614 sec   (1742 perm/sec)   p_kst 3.433514e-01   p_cons 6.364486e-04   p_joint 7.542056e-04

Joint ci ratio: 1.375981e-01	ci left: 6.992504e-04	ci right 8.034572e-04	k: 810	n:1080000
Cons ci ratio: 1.497279e-01	ci left: 5.867670e-04	ci right 6.826106e-04	k: 684	n:1080000
KS ci ratio: 5.217707e-03	ci left: 3.423425e-01	ci right 3.441343e-01	k: 370697	n:1080000
CCDC103   1080000 perm   624 sec   (1731 perm/sec)   p_kst 3.432380e-01   p_cons 6.333333e-04   p_joint 7.500000e-04

Joint ci ratio: 1.370920e-01	ci left: 6.981506e-04	ci right 8.017797e-04	k: 816	n:1090000
Cons ci ratio: 1.491845e-01	ci left: 5.857994e-04	ci right 6.811067e-04	k: 689	n:1090000
KS ci ratio: 5.193711e-03	ci left: 3.423472e-01	ci right 3.441307e-01	k: 374130	n:1090000
CCDC103   1090000 perm   634 sec   (1719 perm/sec)   p_kst 3.432385e-01   p_cons 6.321101e-04   p_joint 7.486239e-04

Joint ci ratio: 1.364256e-01	ci left: 6.988277e-04	ci right 8.020122e-04	k: 824	n:1100000
Cons ci ratio: 1.483270e-01	ci left: 5.874761e-04	ci right 6.824580e-04	k: 697	n:1100000
KS ci ratio: 5.170574e-03	ci left: 3.423054e-01	ci right 3.440808e-01	k: 377512	n:1100000
CCDC103   1100000 perm   644 sec   (1709 perm/sec)   p_kst 3.431927e-01   p_cons 6.336364e-04   p_joint 7.490909e-04

Joint ci ratio: 1.130994e-01	ci left: 1.019927e-03	ci right 1.143061e-03	k: 1199	n:1110000
Cons ci ratio: 1.472756e-01	ci left: 5.908594e-04	ci right 6.856516e-04	k: 707	n:1110000
KS ci ratio: 5.146819e-03	ci left: 3.423455e-01	ci right 3.441129e-01	k: 380984	n:1110000
CCDC103   1110000 perm   653 sec   (1699 perm/sec)   p_kst 3.432288e-01   p_cons 6.369369e-04   p_joint 1.080180e-03

Joint ci ratio: 1.126311e-01	ci left: 1.019497e-03	ci right 1.142035e-03	k: 1209	n:1120000
Cons ci ratio: 1.467584e-01	ci left: 5.898839e-04	ci right 6.841581e-04	k: 712	n:1120000
KS ci ratio: 5.123966e-03	ci left: 3.423341e-01	ci right 3.440935e-01	k: 384399	n:1120000
CCDC103   1120000 perm   664 sec   (1688 perm/sec)   p_kst 3.432134e-01   p_cons 6.357143e-04   p_joint 1.079464e-03

Joint ci ratio: 1.118935e-01	ci left: 1.024237e-03	ci right 1.146485e-03	k: 1225	n:1130000
Cons ci ratio: 1.457397e-01	ci left: 5.931895e-04	ci right 6.872767e-04	k: 722	n:1130000
KS ci ratio: 5.100734e-03	ci left: 3.423829e-01	ci right 3.441347e-01	k: 387882	n:1130000
CCDC103   1130000 perm   674 sec   (1677 perm/sec)   p_kst 3.432584e-01   p_cons 6.389381e-04   p_joint 1.084071e-03

Joint ci ratio: 1.333878e-01	ci left: 7.065161e-04	ci right 8.083287e-04	k: 862	n:1140000
Cons ci ratio: 1.452384e-01	ci left: 5.922124e-04	ci right 6.857935e-04	k: 727	n:1140000
KS ci ratio: 5.079277e-03	ci left: 3.423012e-01	ci right 3.440452e-01	k: 391217	n:1140000
CCDC103   1140000 perm   684 sec   (1666 perm/sec)   p_kst 3.431728e-01   p_cons 6.377193e-04   p_joint 7.561404e-04

Joint ci ratio: 1.326215e-01	ci left: 7.087788e-04	ci right 8.102845e-04	k: 872	n:1150000
Cons ci ratio: 1.444468e-01	ci left: 5.937672e-04	ci right 6.870385e-04	k: 735	n:1150000
KS ci ratio: 5.057387e-03	ci left: 3.422836e-01	ci right 3.440198e-01	k: 394624	n:1150000
CCDC103   1150000 perm   695 sec   (1656 perm/sec)   p_kst 3.431513e-01   p_cons 6.391304e-04   p_joint 7.582609e-04

Joint ci ratio: 1.319430e-01	ci left: 7.101706e-04	ci right 8.113145e-04	k: 881	n:1160000
Cons ci ratio: 1.435715e-01	ci left: 5.961276e-04	ci right 6.891537e-04	k: 744	n:1160000
KS ci ratio: 5.035478e-03	ci left: 3.422929e-01	ci right 3.440217e-01	k: 398062	n:1160000
CCDC103   1160000 perm   705 sec   (1645 perm/sec)   p_kst 3.431569e-01   p_cons 6.413793e-04   p_joint 7.594828e-04

Joint ci ratio: 1.316450e-01	ci left: 7.074068e-04	ci right 8.079117e-04	k: 885	n:1170000
Cons ci ratio: 1.431878e-01	ci left: 5.943286e-04	ci right 6.868049e-04	k: 748	n:1170000
KS ci ratio: 5.013966e-03	ci left: 3.422918e-01	ci right 3.440132e-01	k: 401488	n:1170000
CCDC103   1170000 perm   716 sec   (1635 perm/sec)   p_kst 3.431521e-01   p_cons 6.393162e-04   p_joint 7.564103e-04

Joint ci ratio: 1.310547e-01	ci left: 7.079687e-04	ci right 8.080673e-04	k: 893	n:1180000
Cons ci ratio: 1.425233e-01	ci left: 5.950121e-04	ci right 6.871286e-04	k: 755	n:1180000
KS ci ratio: 4.992727e-03	ci left: 3.422908e-01	ci right 3.440049e-01	k: 404914	n:1180000
CCDC103   1180000 perm   726 sec   (1624 perm/sec)   p_kst 3.431475e-01   p_cons 6.398305e-04   p_joint 7.567797e-04

Joint ci ratio: 1.306172e-01	ci left: 7.068963e-04	ci right 8.064838e-04	k: 899	n:1190000
Cons ci ratio: 1.419611e-01	ci left: 5.948746e-04	ci right 6.865757e-04	k: 761	n:1190000
KS ci ratio: 4.971422e-03	ci left: 3.423201e-01	ci right 3.440269e-01	k: 408376	n:1190000
CCDC103   1190000 perm   737 sec   (1615 perm/sec)   p_kst 3.431731e-01   p_cons 6.394958e-04   p_joint 7.554622e-04

Joint ci ratio: 1.300405e-01	ci left: 7.074549e-04	ci right 8.066470e-04	k: 907	n:1200000
Cons ci ratio: 1.413135e-01	ci left: 5.955440e-04	ci right 6.868942e-04	k: 768	n:1200000
KS ci ratio: 4.949957e-03	ci left: 3.423880e-01	ci right 3.440878e-01	k: 411885	n:1200000
CCDC103   1200000 perm   748 sec   (1604 perm/sec)   p_kst 3.432375e-01   p_cons 6.400000e-04   p_joint 7.558333e-04

Joint ci ratio: 1.292597e-01	ci left: 7.104043e-04	ci right 8.093660e-04	k: 918	n:1210000
Cons ci ratio: 1.404033e-01	ci left: 5.985954e-04	ci right 6.897728e-04	k: 778	n:1210000
KS ci ratio: 4.929744e-03	ci left: 3.423656e-01	ci right 3.440583e-01	k: 415286	n:1210000
CCDC103   1210000 perm   759 sec   (1595 perm/sec)   p_kst 3.432116e-01   p_cons 6.429752e-04   p_joint 7.586777e-04

Joint ci ratio: 1.288399e-01	ci left: 7.093405e-04	ci right 8.078086e-04	k: 924	n:1220000
Cons ci ratio: 1.400444e-01	ci left: 5.968525e-04	ci right 6.875126e-04	k: 782	n:1220000
KS ci ratio: 4.909580e-03	ci left: 3.423616e-01	ci right 3.440474e-01	k: 418709	n:1220000
CCDC103   1220000 perm   770 sec   (1585 perm/sec)   p_kst 3.432041e-01   p_cons 6.409836e-04   p_joint 7.573770e-04

Joint ci ratio: 1.280804e-01	ci left: 7.122293e-04	ci right 8.104713e-04	k: 935	n:1230000
Cons ci ratio: 1.391583e-01	ci left: 5.998462e-04	ci right 6.903368e-04	k: 792	n:1230000
KS ci ratio: 4.889785e-03	ci left: 3.423463e-01	ci right 3.440252e-01	k: 422118	n:1230000
CCDC103   1230000 perm   781 sec   (1575 perm/sec)   p_kst 3.431854e-01   p_cons 6.439024e-04   p_joint 7.601626e-04

Joint ci ratio: 1.279441e-01	ci left: 7.080467e-04	ci right 8.055999e-04	k: 937	n:1240000
Cons ci ratio: 1.389834e-01	ci left: 5.965655e-04	ci right 6.864387e-04	k: 794	n:1240000
KS ci ratio: 4.869443e-03	ci left: 3.424038e-01	ci right 3.440760e-01	k: 425617	n:1240000
CCDC103   1240000 perm   792 sec   (1566 perm/sec)   p_kst 3.432395e-01   p_cons 6.403226e-04   p_joint 7.556452e-04

Joint ci ratio: 1.274019e-01	ci left: 7.085779e-04	ci right 8.057594e-04	k: 945	n:1250000
Cons ci ratio: 1.382893e-01	ci left: 5.979710e-04	ci right 6.875690e-04	k: 802	n:1250000
KS ci ratio: 4.850670e-03	ci left: 3.423381e-01	ci right 3.440035e-01	k: 428963	n:1250000
CCDC103   1250000 perm   803 sec   (1557 perm/sec)   p_kst 3.431704e-01   p_cons 6.416000e-04   p_joint 7.560000e-04

Joint ci ratio: 1.271336e-01	ci left: 7.060277e-04	ci right 8.026402e-04	k: 949	n:1260000
Cons ci ratio: 1.380319e-01	ci left: 5.955238e-04	ci right 6.845754e-04	k: 805	n:1260000
KS ci ratio: 4.830717e-03	ci left: 3.424035e-01	ci right 3.440623e-01	k: 432473	n:1260000
CCDC103   1260000 perm   814 sec   (1547 perm/sec)   p_kst 3.432325e-01   p_cons 6.388889e-04   p_joint 7.531746e-04

Joint ci ratio: 1.266016e-01	ci left: 7.065678e-04	ci right 8.028192e-04	k: 957	n:1270000
Cons ci ratio: 1.374363e-01	ci left: 5.961565e-04	ci right 6.848866e-04	k: 812	n:1270000
KS ci ratio: 4.811572e-03	ci left: 3.424152e-01	ci right 3.440674e-01	k: 435916	n:1270000
CCDC103   1270000 perm   826 sec   (1538 perm/sec)   p_kst 3.432409e-01   p_cons 6.393701e-04   p_joint 7.535433e-04

Joint ci ratio: 1.258808e-01	ci left: 7.093701e-04	ci right 8.054121e-04	k: 968	n:1280000
Cons ci ratio: 1.365986e-01	ci left: 5.990438e-04	ci right 6.876160e-04	k: 822	n:1280000
KS ci ratio: 4.792934e-03	ci left: 3.424001e-01	ci right 3.440459e-01	k: 439325	n:1280000
CCDC103   1280000 perm   837 sec   (1529 perm/sec)   p_kst 3.432227e-01   p_cons 6.421875e-04   p_joint 7.562500e-04

Joint ci ratio: 1.254286e-01	ci left: 7.091269e-04	ci right 8.047654e-04	k: 975	n:1290000
Cons ci ratio: 1.361034e-01	ci left: 5.988926e-04	ci right 6.870954e-04	k: 828	n:1290000
KS ci ratio: 4.774175e-03	ci left: 3.424171e-01	ci right 3.440565e-01	k: 442775	n:1290000
CCDC103   1290000 perm   848 sec   (1520 perm/sec)   p_kst 3.432364e-01   p_cons 6.418605e-04   p_joint 7.558140e-04

Joint ci ratio: 1.250449e-01	ci left: 7.081429e-04	ci right 8.033348e-04	k: 981	n:1300000
Cons ci ratio: 1.357764e-01	ci left: 5.972579e-04	ci right 6.849916e-04	k: 832	n:1300000
KS ci ratio: 4.755975e-03	ci left: 3.424015e-01	ci right 3.440346e-01	k: 446183	n:1300000
CCDC103   1300000 perm   860 sec   (1512 perm/sec)   p_kst 3.432177e-01   p_cons 6.400000e-04   p_joint 7.546154e-04

Joint ci ratio: 1.246016e-01	ci left: 7.079139e-04	ci right 8.027128e-04	k: 988	n:1310000
Cons ci ratio: 1.352094e-01	ci left: 5.978611e-04	ci right 6.852871e-04	k: 839	n:1310000
KS ci ratio: 4.738070e-03	ci left: 3.423778e-01	ci right 3.440046e-01	k: 449580	n:1310000
CCDC103   1310000 perm   871 sec   (1503 perm/sec)   p_kst 3.431908e-01   p_cons 6.404580e-04   p_joint 7.541985e-04

Joint ci ratio: 1.241630e-01	ci left: 7.076889e-04	ci right 8.020996e-04	k: 995	n:1320000
Cons ci ratio: 1.346495e-01	ci left: 5.984559e-04	ci right 6.855775e-04	k: 846	n:1320000
KS ci ratio: 4.720627e-03	ci left: 3.423295e-01	ci right 3.439500e-01	k: 452944	n:1320000
CCDC103   1320000 perm   883 sec   (1495 perm/sec)   p_kst 3.431394e-01   p_cons 6.409091e-04   p_joint 7.537879e-04

Joint ci ratio: 1.238527e-01	ci left: 7.060107e-04	ci right 7.999448e-04	k: 1000	n:1330000
Cons ci ratio: 1.344119e-01	ci left: 5.961359e-04	ci right 6.827543e-04	k: 849	n:1330000
KS ci ratio: 4.702717e-03	ci left: 3.423450e-01	ci right 3.439595e-01	k: 456392	n:1330000
CCDC103   1330000 perm   895 sec   (1486 perm/sec)   p_kst 3.431519e-01   p_cons 6.383459e-04   p_joint 7.518797e-04

Joint ci ratio: 1.231776e-01	ci left: 7.086973e-04	ci right 8.024374e-04	k: 1011	n:1340000
Cons ci ratio: 1.335503e-01	ci left: 5.996210e-04	ci right 6.861430e-04	k: 860	n:1340000
KS ci ratio: 4.685078e-03	ci left: 3.423536e-01	ci right 3.439620e-01	k: 459831	n:1340000
CCDC103   1340000 perm   907 sec   (1477 perm/sec)   p_kst 3.431575e-01   p_cons 6.417910e-04   p_joint 7.544776e-04

Joint ci ratio: 1.226935e-01	ci left: 7.091914e-04	ci right 8.026015e-04	k: 1019	n:1350000
Cons ci ratio: 1.330874e-01	ci left: 5.994756e-04	ci right 6.856531e-04	k: 866	n:1350000
KS ci ratio: 4.668251e-03	ci left: 3.423028e-01	ci right 3.439052e-01	k: 463190	n:1350000
CCDC103   1350000 perm   919 sec   (1469 perm/sec)   p_kst 3.431037e-01   p_cons 6.414815e-04   p_joint 7.548148e-04

Joint ci ratio: 1.219779e-01	ci left: 7.125304e-04	ci right 8.057933e-04	k: 1031	n:1360000
Cons ci ratio: 1.321755e-01	ci left: 6.035985e-04	ci right 6.897275e-04	k: 878	n:1360000
KS ci ratio: 4.651216e-03	ci left: 3.422903e-01	ci right 3.438868e-01	k: 466600	n:1360000
CCDC103   1360000 perm   931 sec   (1461 perm/sec)   p_kst 3.430882e-01   p_cons 6.455882e-04   p_joint 7.580882e-04

Joint ci ratio: 1.215078e-01	ci left: 7.129910e-04	ci right 8.059288e-04	k: 1039	n:1370000
Cons ci ratio: 1.316523e-01	ci left: 6.041336e-04	ci right 6.899710e-04	k: 885	n:1370000
KS ci ratio: 4.634006e-03	ci left: 3.423130e-01	ci right 3.439037e-01	k: 470058	n:1370000
CCDC103   1370000 perm   943 sec   (1453 perm/sec)   p_kst 3.431080e-01   p_cons 6.459854e-04   p_joint 7.583942e-04

Joint ci ratio: 1.208702e-01	ci left: 7.155539e-04	ci right 8.083012e-04	k: 1050	n:1380000
Cons ci ratio: 1.308424e-01	ci left: 6.074652e-04	ci right 6.932037e-04	k: 896	n:1380000
KS ci ratio: 4.617105e-03	ci left: 3.423238e-01	ci right 3.439087e-01	k: 473500	n:1380000
CCDC103   1380000 perm   955 sec   (1445 perm/sec)   p_kst 3.431159e-01   p_cons 6.492754e-04   p_joint 7.608696e-04

Joint ci ratio: 1.203559e-01	ci left: 7.166855e-04	ci right 8.091561e-04	k: 1059	n:1390000
Cons ci ratio: 1.304070e-01	ci left: 6.072704e-04	ci right 6.926742e-04	k: 902	n:1390000
KS ci ratio: 4.600402e-03	ci left: 3.423330e-01	ci right 3.439122e-01	k: 476940	n:1390000
CCDC103   1390000 perm   967 sec   (1437 perm/sec)   p_kst 3.431223e-01   p_cons 6.489209e-04   p_joint 7.618705e-04

Joint ci ratio: 1.198481e-01	ci left: 7.178018e-04	ci right 8.099980e-04	k: 1068	n:1400000
Cons ci ratio: 1.299759e-01	ci left: 6.070789e-04	ci right 6.921517e-04	k: 908	n:1400000
KS ci ratio: 4.583980e-03	ci left: 3.423321e-01	ci right 3.439057e-01	k: 480366	n:1400000
CCDC103   1400000 perm   980 sec   (1429 perm/sec)   p_kst 3.431186e-01   p_cons 6.485714e-04   p_joint 7.628571e-04

Joint ci ratio: 1.195133e-01	ci left: 7.168389e-04	ci right 8.086360e-04	k: 1074	n:1410000
Cons ci ratio: 1.295491e-01	ci left: 6.068906e-04	ci right 6.916362e-04	k: 914	n:1410000
KS ci ratio: 4.567683e-03	ci left: 3.423362e-01	ci right 3.439042e-01	k: 483799	n:1410000
CCDC103   1410000 perm   992 sec   (1421 perm/sec)   p_kst 3.431199e-01   p_cons 6.482270e-04   p_joint 7.617021e-04

Joint ci ratio: 1.191812e-01	ci left: 7.158899e-04	ci right 8.072929e-04	k: 1080	n:1420000
Cons ci ratio: 1.291265e-01	ci left: 6.067053e-04	ci right 6.911276e-04	k: 920	n:1420000
KS ci ratio: 4.551210e-03	ci left: 3.423747e-01	ci right 3.439372e-01	k: 487281	n:1420000
CCDC103   1420000 perm   1005 sec   (1413 perm/sec)   p_kst 3.431556e-01   p_cons 6.478873e-04   p_joint 7.605634e-04

Joint ci ratio: 1.186881e-01	ci left: 7.169902e-04	ci right 8.081283e-04	k: 1089	n:1430000
Cons ci ratio: 1.285692e-01	ci left: 6.078767e-04	ci right 6.920691e-04	k: 928	n:1430000
KS ci ratio: 4.535322e-03	ci left: 3.423722e-01	ci right 3.439292e-01	k: 490705	n:1430000
CCDC103   1430000 perm   1017 sec   (1406 perm/sec)   p_kst 3.431503e-01   p_cons 6.489510e-04   p_joint 7.615385e-04

Joint ci ratio: 1.180399e-01	ci left: 7.200978e-04	ci right 8.110961e-04	k: 1101	n:1440000
Cons ci ratio: 1.280875e-01	ci left: 6.083604e-04	ci right 6.922801e-04	k: 935	n:1440000
KS ci ratio: 4.519815e-03	ci left: 3.423482e-01	ci right 3.438997e-01	k: 494098	n:1440000
CCDC103   1440000 perm   1029 sec   (1399 perm/sec)   p_kst 3.431236e-01   p_cons 6.493056e-04   p_joint 7.645833e-04

Joint ci ratio: 1.177731e-01	ci left: 7.184781e-04	ci right 8.090524e-04	k: 1106	n:1450000
Cons ci ratio: 1.278148e-01	ci left: 6.068351e-04	ci right 6.903527e-04	k: 939	n:1450000
KS ci ratio: 4.504439e-03	ci left: 3.423272e-01	ci right 3.438734e-01	k: 497495	n:1450000
CCDC103   1450000 perm   1042 sec   (1392 perm/sec)   p_kst 3.431000e-01   p_cons 6.475862e-04   p_joint 7.627586e-04

Joint ci ratio: 1.173499e-01	ci left: 7.188754e-04	ci right 8.091514e-04	k: 1114	n:1460000
Cons ci ratio: 1.272743e-01	ci left: 6.079834e-04	ci right 6.912784e-04	k: 947	n:1460000
KS ci ratio: 4.488379e-03	ci left: 3.423908e-01	ci right 3.439317e-01	k: 501015	n:1460000
CCDC103   1460000 perm   1054 sec   (1385 perm/sec)   p_kst 3.431610e-01   p_cons 6.486301e-04   p_joint 7.630137e-04

Joint ci ratio: 1.168271e-01	ci left: 7.205886e-04	ci right 8.106488e-04	k: 1124	n:1470000
Cons ci ratio: 1.266743e-01	ci left: 6.097754e-04	ci right 6.928926e-04	k: 956	n:1470000
KS ci ratio: 4.473212e-03	ci left: 3.423808e-01	ci right 3.439164e-01	k: 504428	n:1470000
CCDC103   1470000 perm   1067 sec   (1378 perm/sec)   p_kst 3.431483e-01   p_cons 6.503401e-04   p_joint 7.646259e-04

Joint ci ratio: 1.164139e-01	ci left: 7.209675e-04	ci right 8.107344e-04	k: 1132	n:1480000
Cons ci ratio: 1.262135e-01	ci left: 6.102355e-04	ci right 6.930902e-04	k: 963	n:1480000
KS ci ratio: 4.458372e-03	ci left: 3.423534e-01	ci right 3.438837e-01	k: 507815	n:1480000
CCDC103   1480000 perm   1080 sec   (1370 perm/sec)   p_kst 3.431182e-01   p_cons 6.506757e-04   p_joint 7.648649e-04

Joint ci ratio: 1.159542e-01	ci left: 7.219935e-04	ci right 8.115090e-04	k: 1141	n:1490000
Cons ci ratio: 1.256283e-01	ci left: 6.119900e-04	ci right 6.946689e-04	k: 972	n:1490000
KS ci ratio: 4.443916e-03	ci left: 3.423021e-01	ci right 3.438273e-01	k: 511166	n:1490000
CCDC103   1490000 perm   1093 sec   (1363 perm/sec)   p_kst 3.430644e-01   p_cons 6.523490e-04   p_joint 7.657718e-04

Joint ci ratio: 1.157013e-01	ci left: 7.204170e-04	ci right 8.095288e-04	k: 1146	n:1500000
Cons ci ratio: 1.254996e-01	ci left: 6.092014e-04	ci right 6.914131e-04	k: 974	n:1500000
KS ci ratio: 4.429194e-03	ci left: 3.422929e-01	ci right 3.438130e-01	k: 514579	n:1500000
CCDC103   1500000 perm   1106 sec   (1356 perm/sec)   p_kst 3.430527e-01   p_cons 6.493333e-04   p_joint 7.640000e-04

Joint ci ratio: 1.152999e-01	ci left: 7.207910e-04	ci right 8.096187e-04	k: 1154	n:1510000
Cons ci ratio: 1.250515e-01	ci left: 6.096575e-04	ci right 6.916151e-04	k: 981	n:1510000
KS ci ratio: 4.414124e-03	ci left: 3.423341e-01	ci right 3.438492e-01	k: 518068	n:1510000
CCDC103   1510000 perm   1119 sec   (1349 perm/sec)   p_kst 3.430914e-01   p_cons 6.496689e-04   p_joint 7.642384e-04

Joint ci ratio: 1.149026e-01	ci left: 7.211606e-04	ci right 8.097069e-04	k: 1162	n:1520000
Cons ci ratio: 1.246081e-01	ci left: 6.101081e-04	ci right 6.918140e-04	k: 988	n:1520000
KS ci ratio: 4.398822e-03	ci left: 3.424143e-01	ci right 3.439245e-01	k: 521617	n:1520000
CCDC103   1520000 perm   1133 sec   (1342 perm/sec)   p_kst 3.431691e-01   p_cons 6.500000e-04   p_joint 7.644737e-04

Joint ci ratio: 1.146565e-01	ci left: 7.196212e-04	ci right 8.077765e-04	k: 1167	n:1530000
Cons ci ratio: 1.243570e-01	ci left: 6.086534e-04	ci right 6.899881e-04	k: 992	n:1530000
KS ci ratio: 4.384567e-03	ci left: 3.424019e-01	ci right 3.439072e-01	k: 525026	n:1530000
CCDC103   1530000 perm   1146 sec   (1335 perm/sec)   p_kst 3.431542e-01   p_cons 6.483660e-04   p_joint 7.627451e-04

Joint ci ratio: 1.146077e-01	ci left: 7.155790e-04	ci right 8.031992e-04	k: 1168	n:1540000
Cons ci ratio: 1.242947e-01	ci left: 6.053302e-04	ci right 6.861773e-04	k: 993	n:1540000
KS ci ratio: 4.370343e-03	ci left: 3.424008e-01	ci right 3.439011e-01	k: 528452	n:1540000
CCDC103   1540000 perm   1159 sec   (1328 perm/sec)   p_kst 3.431506e-01   p_cons 6.448052e-04   p_joint 7.584416e-04

Joint ci ratio: 1.141690e-01	ci left: 7.166027e-04	ci right 8.039898e-04	k: 1177	n:1550000
Cons ci ratio: 1.237974e-01	ci left: 6.064260e-04	ci right 6.870717e-04	k: 1001	n:1550000
KS ci ratio: 4.356251e-03	ci left: 3.424003e-01	ci right 3.438958e-01	k: 531879	n:1550000
CCDC103   1550000 perm   1173 sec   (1321 perm/sec)   p_kst 3.431477e-01   p_cons 6.458065e-04   p_joint 7.593548e-04

Joint ci ratio: 1.138313e-01	ci left: 7.163683e-04	ci right 8.034511e-04	k: 1184	n:1560000
Cons ci ratio: 1.235512e-01	ci left: 6.050234e-04	ci right 6.853108e-04	k: 1005	n:1560000
KS ci ratio: 4.342108e-03	ci left: 3.424191e-01	ci right 3.439097e-01	k: 535336	n:1560000
CCDC103   1560000 perm   1187 sec   (1315 perm/sec)   p_kst 3.431641e-01   p_cons 6.442308e-04   p_joint 7.589744e-04

Joint ci ratio: 1.133539e-01	ci left: 7.179939e-04	ci right 8.048838e-04	k: 1194	n:1570000
Cons ci ratio: 1.230628e-01	ci left: 6.061081e-04	ci right 6.861984e-04	k: 1013	n:1570000
KS ci ratio: 4.328470e-03	ci left: 3.423994e-01	ci right 3.438853e-01	k: 538733	n:1570000
CCDC103   1570000 perm   1200 sec   (1308 perm/sec)   p_kst 3.431420e-01   p_cons 6.452229e-04   p_joint 7.605096e-04

Joint ci ratio: 1.129294e-01	ci left: 7.189847e-04	ci right 8.056469e-04	k: 1203	n:1580000
Cons ci ratio: 1.225801e-01	ci left: 6.071797e-04	ci right 6.870741e-04	k: 1021	n:1580000
KS ci ratio: 4.314838e-03	ci left: 3.423926e-01	ci right 3.438738e-01	k: 542150	n:1580000
CCDC103   1580000 perm   1214 sec   (1301 perm/sec)   p_kst 3.431329e-01   p_cons 6.462025e-04   p_joint 7.613924e-04

Joint ci ratio: 1.125561e-01	ci left: 7.193524e-04	ci right 8.057532e-04	k: 1211	n:1590000
Cons ci ratio: 1.221624e-01	ci left: 6.076288e-04	ci right 6.872901e-04	k: 1028	n:1590000
KS ci ratio: 4.300980e-03	ci left: 3.424230e-01	ci right 3.438996e-01	k: 545626	n:1590000
CCDC103   1590000 perm   1228 sec   (1295 perm/sec)   p_kst 3.431610e-01   p_cons 6.465409e-04   p_joint 7.616352e-04

Joint ci ratio: 1.122325e-01	ci left: 7.191084e-04	ci right 8.052152e-04	k: 1218	n:1600000
Cons ci ratio: 1.217490e-01	ci left: 6.080726e-04	ci right 6.875029e-04	k: 1035	n:1600000
KS ci ratio: 4.287456e-03	ci left: 3.424318e-01	ci right 3.439037e-01	k: 549068	n:1600000
CCDC103   1600000 perm   1242 sec   (1288 perm/sec)   p_kst 3.431675e-01   p_cons 6.468750e-04   p_joint 7.612500e-04

Joint ci ratio: 1.117294e-01	ci left: 7.212829e-04	ci right 8.072374e-04	k: 1229	n:1610000
Cons ci ratio: 1.211655e-01	ci left: 6.103183e-04	ci right 6.896325e-04	k: 1045	n:1610000
KS ci ratio: 4.274384e-03	ci left: 3.424064e-01	ci right 3.438737e-01	k: 552455	n:1610000
CCDC103   1610000 perm   1256 sec   (1281 perm/sec)   p_kst 3.431398e-01   p_cons 6.490683e-04   p_joint 7.633540e-04

Joint ci ratio: 1.114579e-01	ci left: 7.204308e-04	ci right 8.060615e-04	k: 1235	n:1620000
Cons ci ratio: 1.208770e-01	ci left: 6.095439e-04	ci right 6.885553e-04	k: 1050	n:1620000
KS ci ratio: 4.261237e-03	ci left: 3.424016e-01	ci right 3.438644e-01	k: 555875	n:1620000
CCDC103   1620000 perm   1270 sec   (1275 perm/sec)   p_kst 3.431327e-01   p_cons 6.481481e-04   p_joint 7.623457e-04

Joint ci ratio: 1.110543e-01	ci left: 7.213788e-04	ci right 8.067914e-04	k: 1244	n:1630000
Cons ci ratio: 1.205334e-01	ci left: 6.093742e-04	ci right 6.881231e-04	k: 1056	n:1630000
KS ci ratio: 4.248888e-03	ci left: 3.423252e-01	ci right 3.437834e-01	k: 559178	n:1630000
CCDC103   1630000 perm   1285 sec   (1269 perm/sec)   p_kst 3.430540e-01   p_cons 6.478528e-04   p_joint 7.631902e-04

Joint ci ratio: 1.108320e-01	ci left: 7.199443e-04	ci right 8.050053e-04	k: 1249	n:1640000
Cons ci ratio: 1.202494e-01	ci left: 6.086154e-04	ci right 6.870678e-04	k: 1061	n:1640000
KS ci ratio: 4.236043e-03	ci left: 3.423137e-01	ci right 3.437674e-01	k: 562586	n:1640000
CCDC103   1640000 perm   1299 sec   (1263 perm/sec)   p_kst 3.430402e-01   p_cons 6.469512e-04   p_joint 7.615854e-04

Joint ci ratio: 1.104791e-01	ci left: 7.202954e-04	ci right 8.051091e-04	k: 1257	n:1650000
Cons ci ratio: 1.198551e-01	ci left: 6.090419e-04	ci right 6.872735e-04	k: 1068	n:1650000
KS ci ratio: 4.222974e-03	ci left: 3.423386e-01	ci right 3.437880e-01	k: 566054	n:1650000
CCDC103   1650000 perm   1313 sec   (1257 perm/sec)   p_kst 3.430630e-01   p_cons 6.472727e-04   p_joint 7.618182e-04

Joint ci ratio: 1.100859e-01	ci left: 7.212284e-04	ci right 8.058302e-04	k: 1266	n:1660000
Cons ci ratio: 1.194090e-01	ci left: 6.100480e-04	ci right 6.880967e-04	k: 1076	n:1660000
KS ci ratio: 4.209625e-03	ci left: 3.424061e-01	ci right 3.438511e-01	k: 569593	n:1660000
CCDC103   1660000 perm   1327 sec   (1251 perm/sec)   p_kst 3.431283e-01   p_cons 6.481928e-04   p_joint 7.626506e-04

Joint ci ratio: 1.098694e-01	ci left: 7.198213e-04	ci right 8.040813e-04	k: 1271	n:1670000
Cons ci ratio: 1.191329e-01	ci left: 6.092997e-04	ci right 6.870597e-04	k: 1081	n:1670000
KS ci ratio: 4.196832e-03	ci left: 3.424266e-01	ci right 3.438673e-01	k: 573055	n:1670000
CCDC103   1670000 perm   1341 sec   (1245 perm/sec)   p_kst 3.431467e-01   p_cons 6.473054e-04   p_joint 7.610778e-04

Joint ci ratio: 1.094400e-01	ci left: 7.213258e-04	ci right 8.054106e-04	k: 1281	n:1680000
Cons ci ratio: 1.187493e-01	ci left: 6.097157e-04	ci right 6.872606e-04	k: 1088	n:1680000
KS ci ratio: 4.184137e-03	ci left: 3.424487e-01	ci right 3.438852e-01	k: 576520	n:1680000
CCDC103   1680000 perm   1355 sec   (1240 perm/sec)   p_kst 3.431667e-01   p_cons 6.476190e-04   p_joint 7.625000e-04

Joint ci ratio: 1.091849e-01	ci left: 7.205108e-04	ci right 8.042922e-04	k: 1287	n:1690000
Cons ci ratio: 1.184236e-01	ci left: 6.095529e-04	ci right 6.868495e-04	k: 1094	n:1690000
KS ci ratio: 4.172258e-03	ci left: 3.423949e-01	ci right 3.438270e-01	k: 579857	n:1690000
CCDC103   1690000 perm   1370 sec   (1234 perm/sec)   p_kst 3.431107e-01   p_cons 6.473373e-04   p_joint 7.615385e-04

Joint ci ratio: 1.088894e-01	ci left: 7.202778e-04	ci right 8.037910e-04	k: 1294	n:1700000
Cons ci ratio: 1.181542e-01	ci left: 6.088214e-04	ci right 6.858374e-04	k: 1099	n:1700000
KS ci ratio: 4.159774e-03	ci left: 3.424181e-01	ci right 3.438460e-01	k: 583324	n:1700000
CCDC103   1700000 perm   1384 sec   (1228 perm/sec)   p_kst 3.431318e-01   p_cons 6.464706e-04   p_joint 7.611765e-04

Joint ci ratio: 1.085129e-01	ci left: 7.211858e-04	ci right 8.044966e-04	k: 1303	n:1710000
Cons ci ratio: 1.178866e-01	ci left: 6.080987e-04	ci right 6.848369e-04	k: 1104	n:1710000
KS ci ratio: 4.147622e-03	ci left: 3.424171e-01	ci right 3.438408e-01	k: 586750	n:1710000
CCDC103   1710000 perm   1399 sec   (1222 perm/sec)   p_kst 3.431287e-01   p_cons 6.456140e-04   p_joint 7.619883e-04

Joint ci ratio: 1.079759e-01	ci left: 7.243464e-04	ci right 8.075819e-04	k: 1316	n:1720000
Cons ci ratio: 1.172515e-01	ci left: 6.113349e-04	ci right 6.880371e-04	k: 1116	n:1720000
KS ci ratio: 4.135543e-03	ci left: 3.424195e-01	ci right 3.438391e-01	k: 590182	n:1720000
CCDC103   1720000 perm   1414 sec   (1216 perm/sec)   p_kst 3.431291e-01   p_cons 6.488372e-04   p_joint 7.651163e-04

Joint ci ratio: 1.077308e-01	ci left: 7.235341e-04	ci right 8.064756e-04	k: 1322	n:1730000
Cons ci ratio: 1.170422e-01	ci left: 6.100455e-04	ci right 6.864399e-04	k: 1120	n:1730000
KS ci ratio: 4.123686e-03	ci left: 3.424093e-01	ci right 3.438248e-01	k: 593592	n:1730000
CCDC103   1730000 perm   1428 sec   (1211 perm/sec)   p_kst 3.431168e-01   p_cons 6.473988e-04   p_joint 7.641618e-04

Joint ci ratio: 1.072454e-01	ci left: 7.260870e-04	ci right 8.089225e-04	k: 1334	n:1740000
Cons ci ratio: 1.165235e-01	ci left: 6.121188e-04	ci right 6.884097e-04	k: 1130	n:1740000
KS ci ratio: 4.111930e-03	ci left: 3.423992e-01	ci right 3.438105e-01	k: 597002	n:1740000
CCDC103   1740000 perm   1443 sec   (1206 perm/sec)   p_kst 3.431046e-01   p_cons 6.494253e-04   p_joint 7.666667e-04

Joint ci ratio: 1.068857e-01	ci left: 7.269431e-04	ci right 8.095806e-04	k: 1343	n:1750000
Cons ci ratio: 1.160625e-01	ci left: 6.136142e-04	ci right 6.897683e-04	k: 1139	n:1750000
KS ci ratio: 4.100222e-03	ci left: 3.423949e-01	ci right 3.438022e-01	k: 600422	n:1750000
CCDC103   1750000 perm   1458 sec   (1200 perm/sec)   p_kst 3.430983e-01   p_cons 6.508571e-04   p_joint 7.674286e-04

Joint ci ratio: 1.065295e-01	ci left: 7.277899e-04	ci right 8.102307e-04	k: 1352	n:1760000
Cons ci ratio: 1.156574e-01	ci left: 6.145415e-04	ci right 6.905263e-04	k: 1147	n:1760000
KS ci ratio: 4.088691e-03	ci left: 3.423821e-01	ci right 3.437854e-01	k: 603827	n:1760000
CCDC103   1760000 perm   1473 sec   (1195 perm/sec)   p_kst 3.430835e-01   p_cons 6.517045e-04   p_joint 7.681818e-04

Joint ci ratio: 1.062550e-01	ci left: 7.275277e-04	ci right 8.097132e-04	k: 1359	n:1770000
Cons ci ratio: 1.153063e-01	ci left: 6.149101e-04	ci right 6.906940e-04	k: 1154	n:1770000
KS ci ratio: 4.076716e-03	ci left: 3.424294e-01	ci right 3.438288e-01	k: 607338	n:1770000
CCDC103   1770000 perm   1488 sec   (1190 perm/sec)   p_kst 3.431288e-01   p_cons 6.519774e-04   p_joint 7.677966e-04

Joint ci ratio: 1.059827e-01	ci left: 7.272687e-04	ci right 8.092011e-04	k: 1366	n:1780000
Cons ci ratio: 1.149585e-01	ci left: 6.152749e-04	ci right 6.908594e-04	k: 1161	n:1780000
KS ci ratio: 4.065006e-03	ci left: 3.424581e-01	ci right 3.438536e-01	k: 610817	n:1780000
CCDC103   1780000 perm   1503 sec   (1184 perm/sec)   p_kst 3.431556e-01   p_cons 6.522472e-04   p_joint 7.674157e-04

Joint ci ratio: 1.057509e-01	ci left: 7.264689e-04	ci right 8.081212e-04	k: 1372	n:1790000
Cons ci ratio: 1.147612e-01	ci left: 6.140080e-04	ci right 6.892987e-04	k: 1165	n:1790000
KS ci ratio: 4.053407e-03	ci left: 3.424855e-01	ci right 3.438771e-01	k: 614294	n:1790000
CCDC103   1790000 perm   1518 sec   (1179 perm/sec)   p_kst 3.431810e-01   p_cons 6.508380e-04   p_joint 7.664804e-04

Joint ci ratio: 1.054824e-01	ci left: 7.262191e-04	ci right 8.076232e-04	k: 1379	n:1800000
Cons ci ratio: 1.144671e-01	ci left: 6.138347e-04	ci right 6.888981e-04	k: 1171	n:1800000
KS ci ratio: 4.042081e-03	ci left: 3.424931e-01	ci right 3.438808e-01	k: 617736	n:1800000
CCDC103   1800000 perm   1533 sec   (1174 perm/sec)   p_kst 3.431867e-01   p_cons 6.505556e-04   p_joint 7.661111e-04

Joint ci ratio: 1.051779e-01	ci left: 7.265103e-04	ci right 8.076974e-04	k: 1387	n:1810000
Cons ci ratio: 1.141752e-01	ci left: 6.136634e-04	ci right 6.885017e-04	k: 1177	n:1810000
KS ci ratio: 4.030603e-03	ci left: 3.425282e-01	ci right 3.439121e-01	k: 621228	n:1810000
CCDC103   1810000 perm   1549 sec   (1169 perm/sec)   p_kst 3.432199e-01   p_cons 6.502762e-04   p_joint 7.662983e-04

Joint ci ratio: 1.048385e-01	ci left: 7.273337e-04	ci right 8.083344e-04	k: 1396	n:1820000
Cons ci ratio: 1.137895e-01	ci left: 6.145620e-04	ci right 6.892396e-04	k: 1185	n:1820000
KS ci ratio: 4.019746e-03	ci left: 3.425042e-01	ci right 3.438842e-01	k: 624613	n:1820000
CCDC103   1820000 perm   1564 sec   (1163 perm/sec)   p_kst 3.431940e-01   p_cons 6.510989e-04   p_joint 7.670330e-04

Joint ci ratio: 1.045769e-01	ci left: 7.270842e-04	ci right 8.078426e-04	k: 1403	n:1830000
Cons ci ratio: 1.135027e-01	ci left: 6.143892e-04	ci right 6.888451e-04	k: 1191	n:1830000
KS ci ratio: 4.008913e-03	ci left: 3.424875e-01	ci right 3.438638e-01	k: 628011	n:1830000
CCDC103   1830000 perm   1580 sec   (1158 perm/sec)   p_kst 3.431754e-01   p_cons 6.508197e-04   p_joint 7.666667e-04

Joint ci ratio: 1.042802e-01	ci left: 7.273669e-04	ci right 8.079134e-04	k: 1411	n:1840000
Cons ci ratio: 1.132655e-01	ci left: 6.136904e-04	ci right 6.878958e-04	k: 1196	n:1840000
KS ci ratio: 3.998066e-03	ci left: 3.424825e-01	ci right 3.438550e-01	k: 631430	n:1840000
CCDC103   1840000 perm   1596 sec   (1153 perm/sec)   p_kst 3.431685e-01   p_cons 6.500000e-04   p_joint 7.668478e-04

Joint ci ratio: 1.039128e-01	ci left: 7.286999e-04	ci right 8.090924e-04	k: 1421	n:1850000
Cons ci ratio: 1.128420e-01	ci left: 6.151005e-04	ci right 6.891798e-04	k: 1205	n:1850000
KS ci ratio: 3.987010e-03	ci left: 3.425110e-01	ci right 3.438798e-01	k: 634911	n:1850000
CCDC103   1850000 perm   1612 sec   (1148 perm/sec)   p_kst 3.431951e-01   p_cons 6.513514e-04   p_joint 7.681081e-04

Joint ci ratio: 1.038035e-01	ci left: 7.263531e-04	ci right 8.063973e-04	k: 1424	n:1860000
Cons ci ratio: 1.127020e-01	ci left: 6.133609e-04	ci right 6.871330e-04	k: 1208	n:1860000
KS ci ratio: 3.976486e-03	ci left: 3.424892e-01	ci right 3.438543e-01	k: 638299	n:1860000
CCDC103   1860000 perm   1628 sec   (1143 perm/sec)   p_kst 3.431715e-01   p_cons 6.494624e-04   p_joint 7.655914e-04

Joint ci ratio: 1.035857e-01	ci left: 7.255942e-04	ci right 8.053768e-04	k: 1430	n:1870000
Cons ci ratio: 1.124234e-01	ci left: 6.131991e-04	ci right 6.867573e-04	k: 1214	n:1870000
KS ci ratio: 3.965923e-03	ci left: 3.424815e-01	ci right 3.438430e-01	k: 641713	n:1870000
CCDC103   1870000 perm   1644 sec   (1138 perm/sec)   p_kst 3.431620e-01   p_cons 6.491979e-04   p_joint 7.647059e-04

Joint ci ratio: 1.033693e-01	ci left: 7.248435e-04	ci right 8.043669e-04	k: 1436	n:1880000
Cons ci ratio: 1.122389e-01	ci left: 6.120053e-04	ci right 6.852918e-04	k: 1218	n:1880000
KS ci ratio: 3.955224e-03	ci left: 3.424990e-01	ci right 3.438568e-01	k: 645174	n:1880000
CCDC103   1880000 perm   1660 sec   (1133 perm/sec)   p_kst 3.431777e-01   p_cons 6.478723e-04   p_joint 7.638298e-04

Joint ci ratio: 1.031900e-01	ci left: 7.235855e-04	ci right 8.028248e-04	k: 1441	n:1890000
Cons ci ratio: 1.120552e-01	ci left: 6.108242e-04	ci right 6.838417e-04	k: 1222	n:1890000
KS ci ratio: 3.944459e-03	ci left: 3.425337e-01	ci right 3.438880e-01	k: 648668	n:1890000
CCDC103   1890000 perm   1676 sec   (1128 perm/sec)   p_kst 3.432106e-01   p_cons 6.465608e-04   p_joint 7.624339e-04

Joint ci ratio: 1.029049e-01	ci left: 7.238792e-04	ci right 8.029184e-04	k: 1449	n:1900000
Cons ci ratio: 1.117814e-01	ci left: 6.106788e-04	ci right 6.834888e-04	k: 1228	n:1900000
KS ci ratio: 3.934244e-03	ci left: 3.425149e-01	ci right 3.438656e-01	k: 652061	n:1900000
CCDC103   1900000 perm   1692 sec   (1123 perm/sec)   p_kst 3.431900e-01   p_cons 6.463158e-04   p_joint 7.626316e-04

Joint ci ratio: 1.026574e-01	ci left: 7.236600e-04	ci right 8.024738e-04	k: 1456	n:1910000
Cons ci ratio: 1.115547e-01	ci left: 6.100262e-04	ci right 6.826012e-04	k: 1233	n:1910000
KS ci ratio: 3.924105e-03	ci left: 3.424968e-01	ci right 3.438440e-01	k: 655455	n:1910000
CCDC103   1910000 perm   1708 sec   (1118 perm/sec)   p_kst 3.431702e-01   p_cons 6.455497e-04   p_joint 7.623037e-04

Joint ci ratio: 1.025169e-01	ci left: 7.219207e-04	ci right 8.004310e-04	k: 1460	n:1920000
Cons ci ratio: 1.114195e-01	ci left: 6.083679e-04	ci right 6.806521e-04	k: 1236	n:1920000
KS ci ratio: 3.914016e-03	ci left: 3.424821e-01	ci right 3.438257e-01	k: 658855	n:1920000
CCDC103   1920000 perm   1725 sec   (1113 perm/sec)   p_kst 3.431536e-01   p_cons 6.437500e-04   p_joint 7.604167e-04

Joint ci ratio: 1.022374e-01	ci left: 7.222192e-04	ci right 8.005349e-04	k: 1468	n:1930000
Cons ci ratio: 1.111503e-01	ci left: 6.082380e-04	ci right 6.803207e-04	k: 1242	n:1930000
KS ci ratio: 3.903663e-03	ci left: 3.425068e-01	ci right 3.438470e-01	k: 662331	n:1930000
CCDC103   1930000 perm   1741 sec   (1108 perm/sec)   p_kst 3.431767e-01   p_cons 6.435233e-04   p_joint 7.606218e-04

Joint ci ratio: 1.020293e-01	ci left: 7.215102e-04	ci right 7.995802e-04	k: 1474	n:1940000
Cons ci ratio: 1.108830e-01	ci left: 6.081096e-04	ci right 6.799925e-04	k: 1248	n:1940000
KS ci ratio: 3.893463e-03	ci left: 3.425231e-01	ci right 3.438598e-01	k: 665791	n:1940000
CCDC103   1940000 perm   1758 sec   (1104 perm/sec)   p_kst 3.431912e-01   p_cons 6.432990e-04   p_joint 7.597938e-04

Joint ci ratio: 1.019258e-01	ci left: 7.193093e-04	ci right 7.970575e-04	k: 1477	n:1950000
Cons ci ratio: 1.107502e-01	ci left: 6.064869e-04	ci right 6.780865e-04	k: 1251	n:1950000
KS ci ratio: 3.883772e-03	ci left: 3.424895e-01	ci right 3.438227e-01	k: 669154	n:1950000
CCDC103   1950000 perm   1774 sec   (1099 perm/sec)   p_kst 3.431559e-01   p_cons 6.415385e-04   p_joint 7.574359e-04

Joint ci ratio: 1.015827e-01	ci left: 7.206116e-04	ci right 7.982227e-04	k: 1487	n:1960000
Cons ci ratio: 1.103104e-01	ci left: 6.083536e-04	ci right 6.798699e-04	k: 1261	n:1960000
KS ci ratio: 3.873683e-03	ci left: 3.425108e-01	ci right 3.438407e-01	k: 672624	n:1960000
CCDC103   1960000 perm   1791 sec   (1094 perm/sec)   p_kst 3.431755e-01   p_cons 6.433673e-04   p_joint 7.586735e-04

Joint ci ratio: 1.012430e-01	ci left: 7.219011e-04	ci right 7.993756e-04	k: 1497	n:1970000
Cons ci ratio: 1.098758e-01	ci left: 6.102019e-04	ci right 6.816346e-04	k: 1271	n:1970000
KS ci ratio: 3.863633e-03	ci left: 3.425365e-01	ci right 3.438630e-01	k: 676103	n:1970000
CCDC103   1970000 perm   1808 sec   (1090 perm/sec)   p_kst 3.431995e-01   p_cons 6.451777e-04   p_joint 7.598985e-04

Joint ci ratio: 1.010409e-01	ci left: 7.212087e-04	ci right 7.984453e-04	k: 1503	n:1980000
Cons ci ratio: 1.096176e-01	ci left: 6.100672e-04	ci right 6.813054e-04	k: 1277	n:1980000
KS ci ratio: 3.853838e-03	ci left: 3.425412e-01	ci right 3.438643e-01	k: 679541	n:1980000
CCDC103   1980000 perm   1825 sec   (1085 perm/sec)   p_kst 3.432025e-01   p_cons 6.449495e-04   p_joint 7.590909e-04

Joint ci ratio: 1.006733e-01	ci left: 7.229728e-04	ci right 8.001000e-04	k: 1514	n:1990000
Cons ci ratio: 1.092761e-01	ci left: 6.109116e-04	ci right 6.820119e-04	k: 1285	n:1990000
KS ci ratio: 3.844002e-03	ci left: 3.425594e-01	ci right 3.438792e-01	k: 683006	n:1990000
CCDC103   1990000 perm   1842 sec   (1080 perm/sec)   p_kst 3.432191e-01   p_cons 6.457286e-04   p_joint 7.608040e-04

Joint ci ratio: 1.004415e-01	ci left: 7.227699e-04	ci right 7.996875e-04	k: 1521	n:2000000
Cons ci ratio: 1.089799e-01	ci left: 6.112615e-04	ci right 6.821973e-04	k: 1292	n:2000000
KS ci ratio: 3.834589e-03	ci left: 3.425365e-01	ci right 3.438530e-01	k: 686389	n:2000000
CCDC103   2000000 perm   1859 sec   (1076 perm/sec)   p_kst 3.431945e-01   p_cons 6.460000e-04   p_joint 7.605000e-04

Joint ci ratio: 1.001786e-01	ci left: 7.230543e-04	ci right 7.997889e-04	k: 1529	n:2010000
Cons ci ratio: 1.087279e-01	ci left: 6.111242e-04	ci right 6.818696e-04	k: 1298	n:2010000
KS ci ratio: 3.825237e-03	ci left: 3.425148e-01	ci right 3.438280e-01	k: 689774	n:2010000
CCDC103   2010000 perm   1876 sec   (1071 perm/sec)   p_kst 3.431711e-01   p_cons 6.457711e-04   p_joint 7.606965e-04

Joint ci ratio: 9.998277e-02	ci left: 7.223708e-04	ci right 7.988742e-04	k: 1535	n:2020000
Cons ci ratio: 1.084777e-01	ci left: 6.109885e-04	ci right 6.815450e-04	k: 1304	n:2020000
KS ci ratio: 3.815747e-03	ci left: 3.425175e-01	ci right 3.438275e-01	k: 693208	n:2020000
CCDC103   2020000 perm   1893 sec   (1067 perm/sec)   p_kst 3.431723e-01   p_cons 6.455446e-04   p_joint 7.599010e-04

Joint ci ratio: 9.975574e-02	ci left: 7.221744e-04	ci right 7.984732e-04	k: 1542	n:2030000
Cons ci ratio: 1.082292e-01	ci left: 6.108543e-04	ci right 6.812233e-04	k: 1310	n:2030000
KS ci ratio: 3.806356e-03	ci left: 3.425168e-01	ci right 3.438235e-01	k: 696635	n:2030000
CCDC103   2030000 perm   1911 sec   (1063 perm/sec)   p_kst 3.431700e-01   p_cons 6.453202e-04   p_joint 7.596059e-04

Joint ci ratio: 9.956239e-02	ci left: 7.215022e-04	ci right 7.975736e-04	k: 1548	n:2040000
Cons ci ratio: 1.080234e-01	ci left: 6.102446e-04	ci right 6.804013e-04	k: 1315	n:2040000
KS ci ratio: 3.796717e-03	ci left: 3.425539e-01	ci right 3.438574e-01	k: 700139	n:2040000
CCDC103   2040000 perm   1928 sec   (1058 perm/sec)   p_kst 3.432054e-01   p_cons 6.446078e-04   p_joint 7.588235e-04

Joint ci ratio: 7.751840e-02	ci left: 1.197550e-03	ci right 1.294600e-03	k: 2553	n:2050000
Cons ci ratio: 1.079006e-01	ci left: 6.086916e-04	ci right 6.785852e-04	k: 1318	n:2050000
KS ci ratio: 3.787331e-03	ci left: 3.425691e-01	ci right 3.438694e-01	k: 703599	n:2050000
CCDC103   2050000 perm   1945 sec   (1054 perm/sec)   p_kst 3.432190e-01   p_cons 6.429268e-04   p_joint 1.245366e-03

Joint ci ratio: 7.733694e-02	ci left: 1.197449e-03	ci right 1.294253e-03	k: 2565	n:2060000
Cons ci ratio: 1.076560e-01	ci left: 6.085709e-04	ci right 6.782822e-04	k: 1324	n:2060000
KS ci ratio: 3.777974e-03	ci left: 3.425890e-01	ci right 3.438862e-01	k: 707069	n:2060000
CCDC103   2060000 perm   1963 sec   (1049 perm/sec)   p_kst 3.432374e-01   p_cons 6.427184e-04   p_joint 1.245146e-03

Joint ci ratio: 9.898902e-02	ci left: 7.195254e-04	ci right 7.949261e-04	k: 1566	n:2070000
Cons ci ratio: 1.074939e-01	ci left: 6.075113e-04	ci right 6.769898e-04	k: 1328	n:2070000
KS ci ratio: 3.768855e-03	ci left: 3.425885e-01	ci right 3.438825e-01	k: 710497	n:2070000
CCDC103   2070000 perm   1980 sec   (1045 perm/sec)   p_kst 3.432353e-01   p_cons 6.415459e-04   p_joint 7.565217e-04

Joint ci ratio: 9.883153e-02	ci left: 7.184105e-04	ci right 7.935676e-04	k: 1571	n:2080000
Cons ci ratio: 1.072923e-01	ci left: 6.069299e-04	ci right 6.762035e-04	k: 1333	n:2080000
KS ci ratio: 3.759785e-03	ci left: 3.425898e-01	ci right 3.438808e-01	k: 713929	n:2080000
CCDC103   2080000 perm   1998 sec   (1041 perm/sec)   p_kst 3.432351e-01   p_cons 6.408654e-04   p_joint 7.552885e-04

Joint ci ratio: 9.858100e-02	ci left: 7.187064e-04	ci right 7.936929e-04	k: 1579	n:2090000
Cons ci ratio: 1.069720e-01	ci left: 6.077511e-04	ci right 6.768983e-04	k: 1341	n:2090000
KS ci ratio: 3.750817e-03	ci left: 3.425869e-01	ci right 3.438748e-01	k: 717352	n:2090000
CCDC103   2090000 perm   2016 sec   (1037 perm/sec)   p_kst 3.432306e-01   p_cons 6.416268e-04   p_joint 7.555024e-04

Joint ci ratio: 7.665299e-02	ci left: 1.196123e-03	ci right 1.291927e-03	k: 2611	n:2100000
Cons ci ratio: 1.067337e-01	ci left: 6.076378e-04	ci right 6.766084e-04	k: 1347	n:2100000
KS ci ratio: 3.741901e-03	ci left: 3.425854e-01	ci right 3.438702e-01	k: 720778	n:2100000
CCDC103   2100000 perm   2033 sec   (1033 perm/sec)   p_kst 3.432276e-01   p_cons 6.414286e-04   p_joint 1.243333e-03

Joint ci ratio: 7.652134e-02	ci left: 1.194638e-03	ci right 1.290151e-03	k: 2620	n:2110000
Cons ci ratio: 1.064970e-01	ci left: 6.075258e-04	ci right 6.763212e-04	k: 1353	n:2110000
KS ci ratio: 3.732989e-03	ci left: 3.425911e-01	ci right 3.438728e-01	k: 724219	n:2110000
CCDC103   2110000 perm   2051 sec   (1029 perm/sec)   p_kst 3.432318e-01   p_cons 6.412322e-04   p_joint 1.241706e-03

Joint ci ratio: 7.634677e-02	ci left: 1.194555e-03	ci right 1.289834e-03	k: 2632	n:2120000
Cons ci ratio: 1.062227e-01	ci left: 6.078742e-04	ci right 6.765207e-04	k: 1360	n:2120000
KS ci ratio: 3.723724e-03	ci left: 3.426472e-01	ci right 3.439259e-01	k: 727767	n:2120000
CCDC103   2120000 perm   2068 sec   (1025 perm/sec)   p_kst 3.432863e-01   p_cons 6.415094e-04   p_joint 1.241509e-03

Joint ci ratio: 7.617339e-02	ci left: 1.194473e-03	ci right 1.289520e-03	k: 2644	n:2130000
Cons ci ratio: 1.059119e-01	ci left: 6.086765e-04	ci right 6.772000e-04	k: 1368	n:2130000
KS ci ratio: 3.714744e-03	ci left: 3.426764e-01	ci right 3.439522e-01	k: 731259	n:2130000
CCDC103   2130000 perm   2086 sec   (1021 perm/sec)   p_kst 3.433141e-01   p_cons 6.422535e-04   p_joint 1.241315e-03

Joint ci ratio: 7.600119e-02	ci left: 1.194393e-03	ci right 1.289208e-03	k: 2656	n:2140000
Cons ci ratio: 1.057190e-01	ci left: 6.081069e-04	ci right 6.764337e-04	k: 1373	n:2140000
KS ci ratio: 3.706028e-03	ci left: 3.426811e-01	ci right 3.439539e-01	k: 734699	n:2140000
CCDC103   2140000 perm   2105 sec   (1017 perm/sec)   p_kst 3.433173e-01   p_cons 6.415888e-04   p_joint 1.241121e-03

Joint ci ratio: 7.585862e-02	ci left: 1.193400e-03	ci right 1.287952e-03	k: 2666	n:2150000
Cons ci ratio: 1.055272e-01	ci left: 6.075426e-04	ci right 6.756745e-04	k: 1378	n:2150000
KS ci ratio: 3.697461e-03	ci left: 3.426751e-01	ci right 3.439449e-01	k: 738116	n:2150000
CCDC103   2150000 perm   2123 sec   (1013 perm/sec)   p_kst 3.433098e-01   p_cons 6.409302e-04   p_joint 1.240000e-03

Joint ci ratio: 7.568854e-02	ci left: 1.193325e-03	ci right 1.287650e-03	k: 2678	n:2160000
Cons ci ratio: 1.052984e-01	ci left: 6.074344e-04	ci right 6.753974e-04	k: 1384	n:2160000
KS ci ratio: 3.688980e-03	ci left: 3.426659e-01	ci right 3.439327e-01	k: 741526	n:2160000
CCDC103   2160000 perm   2141 sec   (1009 perm/sec)   p_kst 3.432991e-01   p_cons 6.407407e-04   p_joint 1.239815e-03

Joint ci ratio: 7.544945e-02	ci left: 1.195512e-03	ci right 1.289698e-03	k: 2695	n:2170000
Cons ci ratio: 1.048826e-01	ci left: 6.095711e-04	ci right 6.774872e-04	k: 1395	n:2170000
KS ci ratio: 3.680458e-03	ci left: 3.426687e-01	ci right 3.439326e-01	k: 744962	n:2170000
CCDC103   2170000 perm   2159 sec   (1005 perm/sec)   p_kst 3.433005e-01   p_cons 6.428571e-04   p_joint 1.241935e-03

Joint ci ratio: 9.640872e-02	ci left: 7.212574e-04	ci right 7.947582e-04	k: 1651	n:2180000
Cons ci ratio: 1.046206e-01	ci left: 6.099018e-04	ci right 6.776746e-04	k: 1402	n:2180000
KS ci ratio: 3.672026e-03	ci left: 3.426679e-01	ci right 3.439289e-01	k: 748390	n:2180000
CCDC103   2180000 perm   2177 sec   (1001 perm/sec)   p_kst 3.432982e-01   p_cons 6.431193e-04   p_joint 7.573394e-04

Joint ci ratio: 7.504683e-02	ci left: 1.197587e-03	ci right 1.291411e-03	k: 2724	n:2190000
Cons ci ratio: 1.044347e-01	ci left: 6.093403e-04	ci right 6.769230e-04	k: 1407	n:2190000
KS ci ratio: 3.663662e-03	ci left: 3.426657e-01	ci right 3.439238e-01	k: 751815	n:2190000
CCDC103   2190000 perm   2196 sec   (997 perm/sec)   p_kst 3.432945e-01   p_cons 6.424658e-04   p_joint 1.243836e-03

Joint ci ratio: 9.606054e-02	ci left: 7.200238e-04	ci right 7.931189e-04	k: 1663	n:2200000
Cons ci ratio: 1.042129e-01	ci left: 6.092267e-04	ci right 6.766445e-04	k: 1413	n:2200000
KS ci ratio: 3.655348e-03	ci left: 3.426644e-01	ci right 3.439197e-01	k: 755242	n:2200000
CCDC103   2200000 perm   2214 sec   (994 perm/sec)   p_kst 3.432918e-01   p_cons 6.422727e-04   p_joint 7.559091e-04

Joint ci ratio: 9.577313e-02	ci left: 7.211821e-04	ci right 7.941635e-04	k: 1673	n:2210000
Cons ci ratio: 1.039193e-01	ci left: 6.099957e-04	ci right 6.772968e-04	k: 1421	n:2210000
KS ci ratio: 3.647083e-03	ci left: 3.426640e-01	ci right 3.439165e-01	k: 758671	n:2210000
CCDC103   2210000 perm   2233 sec   (990 perm/sec)   p_kst 3.432900e-01   p_cons 6.429864e-04   p_joint 7.570136e-04

Joint ci ratio: 7.459658e-02	ci left: 1.195990e-03	ci right 1.289102e-03	k: 2757	n:2220000
Cons ci ratio: 1.037736e-01	ci left: 6.090030e-04	ci right 6.760945e-04	k: 1425	n:2220000
KS ci ratio: 3.638925e-03	ci left: 3.426574e-01	ci right 3.439070e-01	k: 762086	n:2220000
CCDC103   2220000 perm   2251 sec   (986 perm/sec)   p_kst 3.432820e-01   p_cons 6.418919e-04   p_joint 1.241892e-03

Joint ci ratio: 9.543176e-02	ci left: 7.199666e-04	ci right 7.925508e-04	k: 1685	n:2230000
Cons ci ratio: 1.035559e-01	ci left: 6.088928e-04	ci right 6.758230e-04	k: 1431	n:2230000
KS ci ratio: 3.630677e-03	ci left: 3.426687e-01	ci right 3.439155e-01	k: 765541	n:2230000
CCDC103   2230000 perm   2270 sec   (982 perm/sec)   p_kst 3.432919e-01   p_cons 6.417040e-04   p_joint 7.556054e-04

Joint ci ratio: 9.512189e-02	ci left: 7.215462e-04	ci right 7.940402e-04	k: 1696	n:2240000
Cons ci ratio: 1.033037e-01	ci left: 6.092187e-04	ci right 6.760118e-04	k: 1438	n:2240000
KS ci ratio: 3.622388e-03	ci left: 3.426920e-01	ci right 3.439361e-01	k: 769023	n:2240000
CCDC103   2240000 perm   2289 sec   (978 perm/sec)   p_kst 3.433138e-01   p_cons 6.419643e-04   p_joint 7.571429e-04

Joint ci ratio: 7.403491e-02	ci left: 1.198364e-03	ci right 1.290928e-03	k: 2799	n:2250000
Cons ci ratio: 1.030891e-01	ci left: 6.091089e-04	ci right 6.757427e-04	k: 1444	n:2250000
KS ci ratio: 3.614187e-03	ci left: 3.427111e-01	ci right 3.439524e-01	k: 772496	n:2250000
CCDC103   2250000 perm   2308 sec   (975 perm/sec)   p_kst 3.433316e-01   p_cons 6.417778e-04   p_joint 1.244000e-03

Joint ci ratio: 9.473196e-02	ci left: 7.212084e-04	ci right 7.933551e-04	k: 1710	n:2260000
Cons ci ratio: 1.028402e-01	ci left: 6.094313e-04	ci right 6.759298e-04	k: 1451	n:2260000
KS ci ratio: 3.606360e-03	ci left: 3.426902e-01	ci right 3.439288e-01	k: 775879	n:2260000
CCDC103   2260000 perm   2328 sec   (971 perm/sec)   p_kst 3.433093e-01   p_cons 6.420354e-04   p_joint 7.566372e-04

Joint ci ratio: 9.442883e-02	ci left: 7.227625e-04	ci right 7.948205e-04	k: 1721	n:2270000
Cons ci ratio: 1.025229e-01	ci left: 6.106096e-04	ci right 6.770187e-04	k: 1460	n:2270000
KS ci ratio: 3.598521e-03	ci left: 3.426775e-01	ci right 3.439132e-01	k: 779280	n:2270000
CCDC103   2270000 perm   2347 sec   (967 perm/sec)   p_kst 3.432952e-01   p_cons 6.431718e-04   p_joint 7.581498e-04

Joint ci ratio: 9.426478e-02	ci left: 7.221620e-04	ci right 7.940281e-04	k: 1727	n:2280000
Cons ci ratio: 1.023480e-01	ci left: 6.100683e-04	ci right 6.762984e-04	k: 1465	n:2280000
KS ci ratio: 3.590844e-03	ci left: 3.426508e-01	ci right 3.438838e-01	k: 782649	n:2280000
CCDC103   2280000 perm   2366 sec   (964 perm/sec)   p_kst 3.432671e-01   p_cons 6.425439e-04   p_joint 7.574561e-04

Joint ci ratio: 9.396610e-02	ci left: 7.236989e-04	ci right 7.954772e-04	k: 1738	n:2290000
Cons ci ratio: 1.021045e-01	ci left: 6.103828e-04	ci right 6.764801e-04	k: 1472	n:2290000
KS ci ratio: 3.582963e-03	ci left: 3.426562e-01	ci right 3.438865e-01	k: 786091	n:2290000
CCDC103   2290000 perm   2385 sec   (960 perm/sec)   p_kst 3.432712e-01   p_cons 6.427948e-04   p_joint 7.589520e-04

Joint ci ratio: 9.388525e-02	ci left: 7.218261e-04	ci right 7.933536e-04	k: 1741	n:2300000
Cons ci ratio: 1.020008e-01	ci left: 6.090000e-04	ci right 6.748765e-04	k: 1475	n:2300000
KS ci ratio: 3.575371e-03	ci left: 3.426316e-01	ci right 3.438592e-01	k: 789464	n:2300000
CCDC103   2300000 perm   2404 sec   (957 perm/sec)   p_kst 3.432452e-01   p_cons 6.413043e-04   p_joint 7.569565e-04

Joint ci ratio: 9.372401e-02	ci left: 7.212378e-04	ci right 7.925775e-04	k: 1747	n:2310000
Cons ci ratio: 1.018973e-01	ci left: 6.076292e-04	ci right 6.732868e-04	k: 1478	n:2310000
KS ci ratio: 3.567636e-03	ci left: 3.426314e-01	ci right 3.438564e-01	k: 792893	n:2310000
CCDC103   2310000 perm   2423 sec   (953 perm/sec)   p_kst 3.432437e-01   p_cons 6.398268e-04   p_joint 7.562771e-04

Joint ci ratio: 9.348363e-02	ci left: 7.219175e-04	ci right 7.931313e-04	k: 1756	n:2320000
Cons ci ratio: 1.016228e-01	ci left: 6.083707e-04	ci right 6.739207e-04	k: 1486	n:2320000
KS ci ratio: 3.559845e-03	ci left: 3.426446e-01	ci right 3.438670e-01	k: 796353	n:2320000
CCDC103   2320000 perm   2442 sec   (950 perm/sec)   p_kst 3.432556e-01   p_cons 6.405172e-04   p_joint 7.568966e-04

Joint ci ratio: 9.327152e-02	ci left: 7.221724e-04	ci right 7.932409e-04	k: 1764	n:2330000
Cons ci ratio: 1.013845e-01	ci left: 6.086877e-04	ci right 6.741088e-04	k: 1493	n:2330000
KS ci ratio: 3.552304e-03	ci left: 3.426324e-01	ci right 3.438521e-01	k: 799754	n:2330000
CCDC103   2330000 perm   2462 sec   (946 perm/sec)   p_kst 3.432421e-01   p_cons 6.407725e-04   p_joint 7.570815e-04

Joint ci ratio: 9.300837e-02	ci left: 7.232602e-04	ci right 7.942240e-04	k: 1774	n:2340000
Cons ci ratio: 1.011141e-01	ci left: 6.094187e-04	ci right 6.747334e-04	k: 1501	n:2340000
KS ci ratio: 3.544670e-03	ci left: 3.426382e-01	ci right 3.438553e-01	k: 803197	n:2340000
CCDC103   2340000 perm   2481 sec   (943 perm/sec)   p_kst 3.432466e-01   p_cons 6.414530e-04   p_joint 7.581197e-04

Joint ci ratio: 9.290382e-02	ci left: 7.218450e-04	ci right 7.925861e-04	k: 1778	n:2350000
Cons ci ratio: 1.010133e-01	ci left: 6.080697e-04	ci right 6.731710e-04	k: 1504	n:2350000
KS ci ratio: 3.537182e-03	ci left: 3.426317e-01	ci right 3.438462e-01	k: 806611	n:2350000
CCDC103   2350000 perm   2501 sec   (940 perm/sec)   p_kst 3.432387e-01   p_cons 6.400000e-04   p_joint 7.565957e-04

Joint ci ratio: 9.277359e-02	ci left: 7.208558e-04	ci right 7.913955e-04	k: 1783	n:2360000
Cons ci ratio: 1.008794e-01	ci left: 6.071453e-04	ci right 6.720563e-04	k: 1508	n:2360000
KS ci ratio: 3.529439e-03	ci left: 3.426637e-01	ci right 3.438757e-01	k: 810116	n:2360000
CCDC103   2360000 perm   2521 sec   (936 perm/sec)   p_kst 3.432695e-01   p_cons 6.389831e-04   p_joint 7.555085e-04

Joint ci ratio: 9.259212e-02	ci left: 7.206993e-04	ci right 7.910783e-04	k: 1790	n:2370000
Cons ci ratio: 1.007127e-01	ci left: 6.066400e-04	ci right 6.713835e-04	k: 1513	n:2370000
KS ci ratio: 3.521892e-03	ci left: 3.426769e-01	ci right 3.438863e-01	k: 813577	n:2370000
CCDC103   2370000 perm   2540 sec   (933 perm/sec)   p_kst 3.432814e-01   p_cons 6.383966e-04   p_joint 7.552743e-04

Joint ci ratio: 9.236032e-02	ci left: 7.213653e-04	ci right 7.916234e-04	k: 1799	n:2380000
Cons ci ratio: 1.004807e-01	ci left: 6.069583e-04	ci right 6.715777e-04	k: 1520	n:2380000
KS ci ratio: 3.514586e-03	ci left: 3.426653e-01	ci right 3.438721e-01	k: 816979	n:2380000
CCDC103   2380000 perm   2560 sec   (930 perm/sec)   p_kst 3.432685e-01   p_cons 6.386555e-04   p_joint 7.558824e-04

Joint ci ratio: 9.213025e-02	ci left: 7.220258e-04	ci right 7.921637e-04	k: 1808	n:2390000
Cons ci ratio: 1.002502e-01	ci left: 6.072740e-04	ci right 6.717701e-04	k: 1527	n:2390000
KS ci ratio: 3.507263e-03	ci left: 3.426616e-01	ci right 3.438659e-01	k: 820400	n:2390000
CCDC103   2390000 perm   2580 sec   (926 perm/sec)   p_kst 3.432636e-01   p_cons 6.389121e-04   p_joint 7.564854e-04

Joint ci ratio: 9.197788e-02	ci left: 7.214598e-04	ci right 7.914205e-04	k: 1814	n:2400000
Cons ci ratio: 1.000866e-01	ci left: 6.067749e-04	ci right 6.711066e-04	k: 1532	n:2400000
KS ci ratio: 3.500142e-03	ci left: 3.426380e-01	ci right 3.438398e-01	k: 823773	n:2400000
CCDC103   2400000 perm   2601 sec   (923 perm/sec)   p_kst 3.432387e-01   p_cons 6.383333e-04   p_joint 7.558333e-04

Joint ci ratio: 9.185150e-02	ci left: 7.204932e-04	ci right 7.902590e-04	k: 1819	n:2410000
Cons ci ratio: 9.992386e-02	ci left: 6.062799e-04	ci right 6.704485e-04	k: 1537	n:2410000
KS ci ratio: 3.492781e-03	ci left: 3.426512e-01	ci right 3.438505e-01	k: 827234	n:2410000
CCDC103   2410000 perm   2621 sec   (920 perm/sec)   p_kst 3.432506e-01   p_cons 6.377593e-04   p_joint 7.547718e-04

Outputting figure to mutsig2_images.part000000000030/CCDC103.2_741_2410000_0.34325_0.00063776_0.00075477.png
                gene_name: CCDC103
               theta_stop: 0.100 
                    nperm: 2410000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.00064 
      ci_cons_bounds_left: 0.00061 
     ci_cons_bounds_right: 0.00067 
                  p_joint: 0.00075 
     ci_joint_bounds_left: 0.00072 
    ci_joint_bounds_right: 0.00079 

Current progress: 98 percent done.
CCDC105
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.941688e-02	ci left: 7.950668e-01	ci right 8.107563e-01	k: 8030	n:10000
Cons ci ratio: 2.668554e-02	ci left: 6.740801e-01	ci right 6.924131e-01	k: 6833	n:10000
KS ci ratio: 1.350497e-01	ci left: 7.242987e-02	ci right 8.301768e-02	k: 776	n:10000
CCDC105   10000 perm   2 sec   (6638 perm/sec)   p_kst 7.760000e-02   p_cons 6.833000e-01   p_joint 8.030000e-01

Joint ci ratio: 2.668800e-02	ci left: 5.119481e-01	ci right 5.258464e-01	k: 10378	n:20000
Cons ci ratio: 1.876124e-02	ci left: 6.793150e-01	ci right 6.922309e-01	k: 13716	n:20000
KS ci ratio: 9.451095e-02	ci left: 7.544481e-02	ci right 8.297806e-02	k: 1583	n:20000
CCDC105   20000 perm   3 sec   (5845 perm/sec)   p_kst 7.915000e-02   p_cons 6.858000e-01   p_joint 5.189000e-01

Outputting figure to mutsig2_images.part000000000030/CCDC105.2_1528_20000_0.07915_0.6858_0.5189.png
                gene_name: CCDC105
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000030
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 30 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1651>
Subject: Job 9893872: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1651>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000031> was used as the working directory.
Started at Sat Oct  6 00:01:17 2012
Results reported at Sat Oct  6 00:11:36 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000031.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000031.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 31  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000031.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    631.60 sec.
    Max Memory :      3665 MB
    Max Swap   :      5946 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
31
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 31
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 31: processing genes 2706 - 2795
Calculating significance of each gene.
Using projection method.
2706	CCDC109A	2.386495e-01
2707	CCDC109B	6.304039e-01
2708	CCDC11	2.205758e-01
2709	CCDC110	2.788892e-01
2710	CCDC111	4.766297e-01
2711	CCDC112	9.962144e-02
2712	CCDC113	3.773447e-01
2713	CCDC114	1.809960e-01
2714	CCDC115	3.410470e-01
2715	CCDC116	6.270711e-01
2716	CCDC117	2.589339e-02
2717	CCDC12	7.140797e-01
2718	CCDC120	2.195833e-01
2719	CCDC121	2.684954e-01
2720	CCDC122	1
In gene CCDC123 the following bins exceed PROBCAP:
    READ-AG-A01L	categ 6	N = 2428    n = 1	mu =   3.23e-07
2721	CCDC123	4.354877e-01
2722	CCDC124	1
2723	CCDC125	4.571890e-01
2724	CCDC126	4.199643e-01
2725	CCDC127	3.892730e-01
2726	CCDC129	6.030211e-01
2727	CCDC13	4.138905e-01
2728	CCDC130	8.819769e-01
2729	CCDC132	6.269220e-01
2730	CCDC134	6.694915e-01
2731	CCDC135	9.431271e-01
2732	CCDC136	2.948464e-01
2733	CCDC137	1.616154e-01
2734	CCDC138	3.093338e-01
2735	CCDC14	6.632221e-01
2736	CCDC140	5.819342e-01
2737	CCDC141	3.736022e-02
2738	CCDC142	8.609722e-01
2739	CCDC144A	4.401916e-01
2740	CCDC144B	6.332012e-01
2741	CCDC144NL	1.506954e-01
2742	CCDC146	7.886394e-01
2743	CCDC147	2.912367e-01
2744	CCDC148	1.236911e-01
2745	CCDC149	7.479656e-01
2746	CCDC15	3.272612e-01
2747	CCDC150	7.063626e-01
2748	CCDC151	9.854829e-01
2749	CCDC153	1
2750	CCDC155	7.829863e-01
2751	CCDC157	9.807754e-01
In gene CCDC158 the following bins exceed PROBCAP:
    READ-AG-4015	categ 6	N = 3434    n = 1	mu =   3.29e-07
2752	CCDC158	3.469112e-01
2753	CCDC159	3.837856e-01
2754	CCDC160	1.080315e-05
2755	CCDC17	7.003478e-01
2756	CCDC18	9.529689e-01
2757	CCDC19	3.687381e-01
2758	CCDC21	7.552986e-01
2759	CCDC22	5.073021e-01
2760	CCDC23	2.141060e-01
2761	CCDC24	3.701089e-01
2762	CCDC25	4.855031e-01
2763	CCDC27	1.575067e-01
2764	CCDC28A	1.047358e-01
2765	CCDC28B	1.247378e-02
2766	CCDC3	7.100352e-01
2767	CCDC30	2.168797e-01
2768	CCDC33	9.615393e-01
2769	CCDC34	1.306578e-01
2770	CCDC36	3.836096e-01
2771	CCDC37	5.455568e-01
2772	CCDC38	9.237622e-01
2773	CCDC39	5.422322e-02
2774	CCDC40	7.834705e-01
2775	CCDC41	2.351368e-01
2776	CCDC42	3.065380e-01
2777	CCDC43	1
2778	CCDC45	4.511361e-01
2779	CCDC46	5.156870e-01
2780	CCDC47	3.844142e-01
2781	CCDC48	1
2782	CCDC50	7.694323e-01
2783	CCDC51	8.674166e-01
2784	CCDC52	8.429801e-01
2785	CCDC53	4.964011e-01
2786	CCDC54	6.136107e-01
2787	CCDC55	5.645192e-01
2788	CCDC56	1
2789	CCDC57	8.736417e-01
2790	CCDC58	4.639674e-01
2791	CCDC59	3.616005e-01
2792	CCDC6	4.938363e-01
2793	CCDC60	1.160408e-02
2794	CCDC61	9.392034e-01
2795	CCDC62	9.234267e-01
Done

Running MutSig 2:
Scatter job 31: processing genes 2706 - 2795
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CCDC141
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.590609e-02	ci left: 3.202883e-01	ci right 3.388111e-01	k: 3295	n:10000
Cons ci ratio: 3.721421e-02	ci left: 5.160570e-01	ci right 5.357279e-01	k: 5259	n:10000
KS ci ratio: 7.660662e-02	ci left: 1.994895e-01	ci right 2.154812e-01	k: 2074	n:10000
CCDC141   10000 perm   2 sec   (4362 perm/sec)   p_kst 2.074000e-01   p_cons 5.259000e-01   p_joint 3.295000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC141.14_2676_10000_0.2074_0.5259_0.3295.png
                gene_name: CCDC141
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 2 percent done.
CCDC39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.755871e-02	ci left: 6.598801e-01	ci right 6.784213e-01	k: 6692	n:10000
Cons ci ratio: 4.494084e-02	ci left: 4.222622e-01	ci right 4.417774e-01	k: 4320	n:10000
KS ci ratio: 2.042418e-02	ci left: 7.783356e-01	ci right 7.944972e-01	k: 7865	n:10000
CCDC39   10000 perm   2 sec   (4524 perm/sec)   p_kst 7.865000e-01   p_cons 4.320000e-01   p_joint 6.692000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC39.12_2906_10000_0.7865_0.432_0.6692.png
                gene_name: CCDC39
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 3 percent done.
CCDC160
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.481229e-02	ci left: 8.684609e-01	ci right 8.815198e-01	k: 8751	n:10000
Cons ci ratio: 5.495838e-02	ci left: 3.278334e-01	ci right 3.464615e-01	k: 3371	n:10000
KS ci ratio: 2.422036e-02	ci left: 7.148214e-01	ci right 7.324482e-01	k: 7237	n:10000
CCDC160   10000 perm   2 sec   (5337 perm/sec)   p_kst 7.237000e-01   p_cons 3.371000e-01   p_joint 8.751000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC160.9_982_10000_0.7237_0.3371_0.8751.png
                gene_name: CCDC160
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 5 percent done.
CCDC129
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.355274e-02	ci left: 5.673461e-01	ci right 5.868090e-01	k: 5771	n:10000
Cons ci ratio: 6.227196e-02	ci left: 2.748786e-01	ci right 2.926475e-01	k: 2837	n:10000
KS ci ratio: 2.599129e-02	ci left: 6.854671e-01	ci right 7.036194e-01	k: 6946	n:10000
CCDC129   10000 perm   2 sec   (4822 perm/sec)   p_kst 6.946000e-01   p_cons 2.837000e-01   p_joint 5.771000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC129.8_3187_10000_0.6946_0.2837_0.5771.png
                gene_name: CCDC129
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 7 percent done.
CCDC147
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.059483e-02	ci left: 6.118092e-01	ci right 6.309201e-01	k: 6214	n:10000
Cons ci ratio: 2.073996e-02	ci left: 7.730669e-01	ci right 7.893690e-01	k: 7813	n:10000
KS ci ratio: 7.712279e-02	ci left: 1.973215e-01	ci right 2.132506e-01	k: 2052	n:10000
CCDC147   10000 perm   2 sec   (4994 perm/sec)   p_kst 2.052000e-01   p_cons 7.813000e-01   p_joint 6.214000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC147.8_2691_10000_0.2052_0.7813_0.6214.png
                gene_name: CCDC147
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 8 percent done.
CCDC158
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.640851e-02	ci left: 4.066140e-01	ci right 4.260348e-01	k: 4163	n:10000
KS ci ratio: 2.565491e-02	ci left: 6.910118e-01	ci right 7.090715e-01	k: 7001	n:10000
CCDC158   10000 perm   2 sec   (4557 perm/sec)   p_kst 7.001000e-01   p_cons 4.163000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC158.8_3434_10000_0.7001_0.4163_1.png
                gene_name: CCDC158
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
CCDC60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.764788e-02	ci left: 8.240174e-01	ci right 8.387890e-01	k: 8315	n:10000
Cons ci ratio: 3.408486e-02	ci left: 5.596260e-01	ci right 5.791336e-01	k: 5694	n:10000
KS ci ratio: 2.109753e-02	ci left: 7.670911e-01	ci right 7.835482e-01	k: 7754	n:10000
CCDC60   10000 perm   2 sec   (5256 perm/sec)   p_kst 7.754000e-01   p_cons 5.694000e-01   p_joint 8.315000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC60.8_1709_10000_0.7754_0.5694_0.8315.png
                gene_name: CCDC60
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 11 percent done.
CCDC110
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.040185e-01	ci left: 3.195912e-02	ci right 3.931460e-02	k: 355	n:10000
Cons ci ratio: 2.793293e-02	ci left: 6.538404e-01	ci right 6.724645e-01	k: 6632	n:10000
KS ci ratio: 4.208622e-01	ci left: 6.794980e-03	ci right 1.049980e-02	k: 85	n:10000
CCDC110   10000 perm   2 sec   (4801 perm/sec)   p_kst 8.500000e-03   p_cons 6.632000e-01   p_joint 3.550000e-02

Joint ci ratio: 8.862553e-02	ci left: 8.513767e-02	ci right 9.308226e-02	k: 1781	n:20000
Cons ci ratio: 2.012493e-02	ci left: 6.481638e-01	ci right 6.613912e-01	k: 13096	n:20000
KS ci ratio: 3.136318e-01	ci left: 6.535562e-03	ci right 9.010769e-03	k: 154	n:20000
CCDC110   20000 perm   5 sec   (4398 perm/sec)   p_kst 7.700000e-03   p_cons 6.548000e-01   p_joint 8.905000e-02

Joint ci ratio: 1.046249e-01	ci left: 4.235666e-02	ci right 4.706535e-02	k: 1340	n:30000
Cons ci ratio: 1.603415e-02	ci left: 6.604297e-01	ci right 6.711382e-01	k: 19974	n:30000
KS ci ratio: 2.530818e-01	ci left: 6.929423e-03	ci right 8.967601e-03	k: 237	n:30000
CCDC110   30000 perm   7 sec   (4219 perm/sec)   p_kst 7.900000e-03   p_cons 6.658000e-01   p_joint 4.466667e-02

Joint ci ratio: 9.739023e-02	ci left: 3.702618e-02	ci right 4.084113e-02	k: 1556	n:40000
Cons ci ratio: 1.390323e-02	ci left: 6.606011e-01	ci right 6.698749e-01	k: 26610	n:40000
KS ci ratio: 2.243408e-01	ci left: 6.725110e-03	ci right 8.447534e-03	k: 302	n:40000
CCDC110   40000 perm   10 sec   (4111 perm/sec)   p_kst 7.550000e-03   p_cons 6.652500e-01   p_joint 3.890000e-02

Joint ci ratio: 9.433693e-02	ci left: 3.180313e-02	ci right 3.497135e-02	k: 1668	n:50000
Cons ci ratio: 1.212433e-02	ci left: 6.723192e-01	ci right 6.805403e-01	k: 33822	n:50000
KS ci ratio: 2.003242e-01	ci left: 6.838468e-03	ci right 8.379527e-03	k: 379	n:50000
CCDC110   50000 perm   12 sec   (4018 perm/sec)   p_kst 7.580000e-03   p_cons 6.764400e-01   p_joint 3.336000e-02

Joint ci ratio: 1.090021e-01	ci left: 1.994869e-02	ci right 2.226462e-02	k: 1265	n:60000
Cons ci ratio: 1.102729e-02	ci left: 6.742946e-01	ci right 6.817882e-01	k: 40683	n:60000
KS ci ratio: 1.843012e-01	ci left: 6.793417e-03	ci right 8.188191e-03	k: 448	n:60000
CCDC110   60000 perm   15 sec   (3944 perm/sec)   p_kst 7.466667e-03   p_cons 6.780500e-01   p_joint 2.108333e-02

Joint ci ratio: 9.078570e-02	ci left: 2.476382e-02	ci right 2.713284e-02	k: 1815	n:70000
Cons ci ratio: 1.018276e-02	ci left: 6.757132e-01	ci right 6.826433e-01	k: 47543	n:70000
KS ci ratio: 1.707669e-01	ci left: 6.833160e-03	ci right 8.122457e-03	k: 522	n:70000
CCDC110   70000 perm   18 sec   (3874 perm/sec)   p_kst 7.457143e-03   p_cons 6.791857e-01   p_joint 2.592857e-02

Joint ci ratio: 9.302867e-02	ci left: 2.070148e-02	ci right 2.273341e-02	k: 1736	n:80000
Cons ci ratio: 9.548301e-03	ci left: 6.748749e-01	ci right 6.813622e-01	k: 54250	n:80000
KS ci ratio: 1.590310e-01	ci left: 6.937816e-03	ci right 8.148308e-03	k: 602	n:80000
CCDC110   80000 perm   21 sec   (3805 perm/sec)   p_kst 7.525000e-03   p_cons 6.781250e-01   p_joint 2.170000e-02

Joint ci ratio: 8.334601e-02	ci left: 2.298814e-02	ci right 2.499826e-02	k: 2158	n:90000
Cons ci ratio: 9.771093e-03	ci left: 6.382121e-01	ci right 6.444899e-01	k: 57722	n:90000
KS ci ratio: 1.496445e-01	ci left: 7.000182e-03	ci right 8.143012e-03	k: 680	n:90000
CCDC110   90000 perm   24 sec   (3720 perm/sec)   p_kst 7.555556e-03   p_cons 6.413556e-01   p_joint 2.397778e-02

Joint ci ratio: 8.307557e-02	ci left: 2.087441e-02	ci right 2.269347e-02	k: 2177	n:100000
Cons ci ratio: 9.276445e-03	ci left: 6.380378e-01	ci right 6.439940e-01	k: 64102	n:100000
KS ci ratio: 1.415575e-01	ci left: 7.071053e-03	ci right 8.157799e-03	k: 760	n:100000
CCDC110   100000 perm   28 sec   (3629 perm/sec)   p_kst 7.600000e-03   p_cons 6.410200e-01   p_joint 2.177000e-02

Joint ci ratio: 9.061754e-02	ci left: 1.596872e-02	ci right 1.749328e-02	k: 1839	n:110000
Cons ci ratio: 8.361913e-03	ci left: 6.636321e-01	ci right 6.692137e-01	k: 73307	n:110000
KS ci ratio: 1.356326e-01	ci left: 7.024970e-03	ci right 8.055796e-03	k: 828	n:110000
CCDC110   110000 perm   31 sec   (3582 perm/sec)   p_kst 7.527273e-03   p_cons 6.664273e-01   p_joint 1.671818e-02

Joint ci ratio: 8.935929e-02	ci left: 1.507755e-02	ci right 1.649599e-02	k: 1893	n:120000
Cons ci ratio: 8.014222e-03	ci left: 6.632899e-01	ci right 6.686354e-01	k: 79916	n:120000
KS ci ratio: 1.293094e-01	ci left: 7.108328e-03	ci right 8.099025e-03	k: 911	n:120000
CCDC110   120000 perm   34 sec   (3536 perm/sec)   p_kst 7.591667e-03   p_cons 6.659667e-01   p_joint 1.577500e-02

Joint ci ratio: 8.313366e-02	ci left: 1.611584e-02	ci right 1.752121e-02	k: 2185	n:130000
Cons ci ratio: 7.692454e-03	ci left: 6.638217e-01	ci right 6.689555e-01	k: 86631	n:130000
KS ci ratio: 1.242999e-01	ci left: 7.120161e-03	ci right 8.071232e-03	k: 986	n:130000
CCDC110   130000 perm   37 sec   (3490 perm/sec)   p_kst 7.584615e-03   p_cons 6.663923e-01   p_joint 1.680769e-02

Joint ci ratio: 7.636982e-02	ci left: 1.776551e-02	ci right 1.918310e-02	k: 2585	n:140000
Cons ci ratio: 7.413938e-03	ci left: 6.638373e-01	ci right 6.687844e-01	k: 93284	n:140000
KS ci ratio: 1.201734e-01	ci left: 7.089360e-03	ci right 8.002643e-03	k: 1055	n:140000
CCDC110   140000 perm   41 sec   (3442 perm/sec)   p_kst 7.535714e-03   p_cons 6.663143e-01   p_joint 1.846429e-02

Joint ci ratio: 7.137326e-02	ci left: 1.900925e-02	ci right 2.042273e-02	k: 2956	n:150000
Cons ci ratio: 7.161489e-03	ci left: 6.639874e-01	ci right 6.687662e-01	k: 99957	n:150000
KS ci ratio: 1.166939e-01	ci left: 7.030751e-03	ci right 7.908449e-03	k: 1119	n:150000
CCDC110   150000 perm   44 sec   (3396 perm/sec)   p_kst 7.460000e-03   p_cons 6.663800e-01   p_joint 1.970667e-02

Joint ci ratio: 7.100335e-02	ci left: 1.802957e-02	ci right 1.936296e-02	k: 2990	n:160000
Cons ci ratio: 6.934357e-03	ci left: 6.640460e-01	ci right 6.686730e-01	k: 106618	n:160000
KS ci ratio: 1.127352e-01	ci left: 7.076993e-03	ci right 7.928499e-03	k: 1199	n:160000
CCDC110   160000 perm   48 sec   (3355 perm/sec)   p_kst 7.493750e-03   p_cons 6.663625e-01   p_joint 1.868750e-02

Joint ci ratio: 7.109154e-02	ci left: 1.694555e-02	ci right 1.820039e-02	k: 2986	n:170000
Cons ci ratio: 6.726838e-03	ci left: 6.641470e-01	ci right 6.686355e-01	k: 113287	n:170000
KS ci ratio: 1.094991e-01	ci left: 7.072457e-03	ci right 7.897414e-03	k: 1271	n:170000
CCDC110   170000 perm   51 sec   (3312 perm/sec)   p_kst 7.476471e-03   p_cons 6.663941e-01   p_joint 1.756471e-02

Joint ci ratio: 6.825530e-02	ci left: 1.737988e-02	ci right 1.861349e-02	k: 3238	n:180000
Cons ci ratio: 6.539105e-03	ci left: 6.640884e-01	ci right 6.684507e-01	k: 119929	n:180000
KS ci ratio: 1.064468e-01	ci left: 7.079553e-03	ci right 7.880876e-03	k: 1345	n:180000
CCDC110   180000 perm   55 sec   (3270 perm/sec)   p_kst 7.472222e-03   p_cons 6.662722e-01   p_joint 1.798889e-02

Joint ci ratio: 6.820258e-02	ci left: 1.650628e-02	ci right 1.767694e-02	k: 3246	n:190000
Cons ci ratio: 6.361590e-03	ci left: 6.643644e-01	ci right 6.686095e-01	k: 126633	n:190000
KS ci ratio: 1.028367e-01	ci left: 7.199009e-03	ci right 7.984548e-03	k: 1441	n:190000
CCDC110   190000 perm   59 sec   (3224 perm/sec)   p_kst 7.584211e-03   p_cons 6.664895e-01   p_joint 1.708421e-02

Joint ci ratio: 6.443335e-02	ci left: 1.758420e-02	ci right 1.875982e-02	k: 3633	n:200000
Cons ci ratio: 6.199040e-03	ci left: 6.645240e-01	ci right 6.686612e-01	k: 133319	n:200000
KS ci ratio: 9.986534e-02	ci left: 7.263044e-03	ci right 8.031329e-03	k: 1528	n:200000
CCDC110   200000 perm   63 sec   (3186 perm/sec)   p_kst 7.640000e-03   p_cons 6.665950e-01   p_joint 1.816500e-02

Outputting figure to mutsig2_images.part000000000031/CCDC110.7_2530_200000_0.00764_0.6666_0.018165.png
                gene_name: CCDC110
               theta_stop: 0.100 
                    nperm: 200000 
                     p_ks: 0.0076 
        ci_ks_bounds_left: 0.0073 
       ci_ks_bounds_right: 0.0080 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 13 percent done.
CCDC27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.693796e-02	ci left: 8.354145e-01	ci right 8.497853e-01	k: 8427	n:10000
Cons ci ratio: 4.042832e-02	ci left: 4.746606e-01	ci right 4.943484e-01	k: 4845	n:10000
KS ci ratio: 2.022342e-02	ci left: 7.816803e-01	ci right 7.977506e-01	k: 7898	n:10000
CCDC27   10000 perm   2 sec   (4313 perm/sec)   p_kst 7.898000e-01   p_cons 4.845000e-01   p_joint 8.427000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC27.7_2019_10000_0.7898_0.4845_0.8427.png
                gene_name: CCDC27
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 15 percent done.
CCDC30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.227754e-02	ci left: 4.523904e-01	ci right 4.720316e-01	k: 4622	n:10000
Cons ci ratio: 2.837173e-02	ci left: 6.467962e-01	ci right 6.655127e-01	k: 6562	n:10000
KS ci ratio: 6.504931e-02	ci left: 2.576556e-01	ci right 2.750807e-01	k: 2663	n:10000
CCDC30   10000 perm   2 sec   (5330 perm/sec)   p_kst 2.663000e-01   p_cons 6.562000e-01   p_joint 4.622000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC30.7_2412_10000_0.2663_0.6562_0.4622.png
                gene_name: CCDC30
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 16 percent done.
CCDC46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.047690e-02	ci left: 4.740612e-01	ci right 4.937482e-01	k: 4839	n:10000
Cons ci ratio: 1.767934e-02	ci left: 8.235089e-01	ci right 8.382978e-01	k: 8310	n:10000
KS ci ratio: 6.954595e-02	ci left: 2.326438e-01	ci right 2.495073e-01	k: 2410	n:10000
CCDC46   10000 perm   2 sec   (5085 perm/sec)   p_kst 2.410000e-01   p_cons 8.310000e-01   p_joint 4.839000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC46.7_3138_10000_0.241_0.831_0.4839.png
                gene_name: CCDC46
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 18 percent done.
CCDC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.948898e-02	ci left: 2.329402e-01	ci right 2.498108e-01	k: 2413	n:10000
Cons ci ratio: 1.452651e-02	ci left: 8.727542e-01	ci right 8.856240e-01	k: 8793	n:10000
KS ci ratio: 1.046204e-01	ci left: 1.166232e-01	ci right 1.295972e-01	k: 1230	n:10000
CCDC11   10000 perm   2 sec   (5267 perm/sec)   p_kst 1.230000e-01   p_cons 8.793000e-01   p_joint 2.413000e-01

Joint ci ratio: 5.176218e-02	ci left: 2.170485e-01	ci right 2.286322e-01	k: 4456	n:20000
Cons ci ratio: 1.005673e-02	ci left: 8.791761e-01	ci right 8.881120e-01	k: 17674	n:20000
KS ci ratio: 7.137438e-02	ci left: 1.263528e-01	ci right 1.357547e-01	k: 2620	n:20000
CCDC11   20000 perm   4 sec   (4800 perm/sec)   p_kst 1.310000e-01   p_cons 8.837000e-01   p_joint 2.228000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC11.6_1577_20000_0.131_0.8837_0.2228.png
                gene_name: CCDC11
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 20 percent done.
CCDC136
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.830018e-02	ci left: 1.924939e-01	ci right 2.082810e-01	k: 2003	n:10000
Cons ci ratio: 1.594356e-01	ci left: 5.243929e-02	ci right 6.162089e-02	k: 569	n:10000
KS ci ratio: 8.417606e-03	ci left: 9.517953e-01	ci right 9.599365e-01	k: 9560	n:10000
CCDC136   10000 perm   2 sec   (4849 perm/sec)   p_kst 9.560000e-01   p_cons 5.690000e-02   p_joint 2.003000e-01

Joint ci ratio: 5.511802e-02	ci left: 1.962564e-01	ci right 2.074304e-01	k: 4036	n:20000
Cons ci ratio: 1.119615e-01	ci left: 5.450789e-02	ci right 6.102142e-02	k: 1154	n:20000
KS ci ratio: 6.058051e-03	ci left: 9.514685e-01	ci right 9.572985e-01	k: 19089	n:20000
CCDC136   20000 perm   5 sec   (4431 perm/sec)   p_kst 9.544500e-01   p_cons 5.770000e-02   p_joint 2.018000e-01

Joint ci ratio: 4.621921e-02	ci left: 1.889108e-01	ci right 1.978820e-01	k: 5801	n:30000
Cons ci ratio: 9.233957e-02	ci left: 5.404414e-02	ci right 5.930879e-02	k: 1699	n:30000
KS ci ratio: 4.944694e-03	ci left: 9.520466e-01	ci right 9.567983e-01	k: 28634	n:30000
CCDC136   30000 perm   7 sec   (4265 perm/sec)   p_kst 9.544667e-01   p_cons 5.663333e-02   p_joint 1.933667e-01

Outputting figure to mutsig2_images.part000000000031/CCDC136.6_3533_30000_0.95447_0.056633_0.19337.png
                gene_name: CCDC136
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 21 percent done.
CCDC144A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.964901e-02	ci left: 1.532571e-01	ci right 1.677413e-01	k: 1604	n:10000
Cons ci ratio: 1.708612e-01	ci left: 4.571402e-02	ci right 5.435051e-02	k: 499	n:10000
KS ci ratio: 1.020487e-02	ci left: 9.316454e-01	ci right 9.412984e-01	k: 9366	n:10000
CCDC144A   10000 perm   2 sec   (4576 perm/sec)   p_kst 9.366000e-01   p_cons 4.990000e-02   p_joint 1.604000e-01

Joint ci ratio: 5.311363e-02	ci left: 2.083329e-01	ci right 2.197503e-01	k: 4280	n:20000
Cons ci ratio: 1.139647e-01	ci left: 5.265862e-02	ci right 5.907127e-02	k: 1116	n:20000
KS ci ratio: 7.183429e-03	ci left: 9.336462e-01	ci right 9.404260e-01	k: 18742	n:20000
CCDC144A   20000 perm   5 sec   (4103 perm/sec)   p_kst 9.371000e-01   p_cons 5.580000e-02   p_joint 2.140000e-01

Joint ci ratio: 4.223737e-02	ci left: 2.183331e-01	ci right 2.277873e-01	k: 6691	n:30000
Cons ci ratio: 9.342215e-02	ci left: 5.283788e-02	ci right 5.804864e-02	k: 1662	n:30000
KS ci ratio: 5.929044e-03	ci left: 9.329673e-01	ci right 9.385480e-01	k: 28074	n:30000
CCDC144A   30000 perm   8 sec   (3978 perm/sec)   p_kst 9.358000e-01   p_cons 5.540000e-02   p_joint 2.230333e-01

Outputting figure to mutsig2_images.part000000000031/CCDC144A.6_4356_30000_0.9358_0.0554_0.22303.png
                gene_name: CCDC144A
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 23 percent done.
CCDC41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.090116e-02	ci left: 6.070880e-01	ci right 6.262440e-01	k: 6167	n:10000
Cons ci ratio: 1.923265e-02	ci left: 7.981111e-01	ci right 8.137103e-01	k: 8060	n:10000
KS ci ratio: 4.481289e-02	ci left: 4.236581e-01	ci right 4.431807e-01	k: 4334	n:10000
CCDC41   10000 perm   2 sec   (5427 perm/sec)   p_kst 4.334000e-01   p_cons 8.060000e-01   p_joint 6.167000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC41.6_2166_10000_0.4334_0.806_0.6167.png
                gene_name: CCDC41
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 25 percent done.
CCDC45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.687951e-02	ci left: 4.017322e-01	ci right 4.211194e-01	k: 4114	n:10000
Cons ci ratio: 2.001624e-02	ci left: 7.851271e-01	ci right 8.011018e-01	k: 7932	n:10000
KS ci ratio: 6.640765e-02	ci left: 2.497426e-01	ci right 2.669984e-01	k: 2583	n:10000
CCDC45   10000 perm   2 sec   (5024 perm/sec)   p_kst 2.583000e-01   p_cons 7.932000e-01   p_joint 4.114000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC45.6_2546_10000_0.2583_0.7932_0.4114.png
                gene_name: CCDC45
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 26 percent done.
CCDC112
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.607595e-02	ci left: 4.101016e-01	ci right 4.295451e-01	k: 4198	n:10000
Cons ci ratio: 2.958260e-02	ci left: 6.275869e-01	ci right 6.465332e-01	k: 6371	n:10000
KS ci ratio: 5.829190e-02	ci left: 3.022309e-01	ci right 3.204791e-01	k: 3113	n:10000
CCDC112   10000 perm   2 sec   (5236 perm/sec)   p_kst 3.113000e-01   p_cons 6.371000e-01   p_joint 4.198000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC112.5_1630_10000_0.3113_0.6371_0.4198.png
                gene_name: CCDC112
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 28 percent done.
CCDC13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.257984e-01	ci left: 8.290659e-02	ci right 9.413446e-02	k: 884	n:10000
Cons ci ratio: 8.288008e-02	ci left: 1.751695e-01	ci right 1.904157e-01	k: 1827	n:10000
KS ci ratio: 1.247955e-01	ci left: 8.416945e-02	ci right 9.547082e-02	k: 897	n:10000
CCDC13   10000 perm   2 sec   (5328 perm/sec)   p_kst 8.970000e-02   p_cons 1.827000e-01   p_joint 8.840000e-02

Joint ci ratio: 7.878237e-02	ci left: 1.057938e-01	ci right 1.145199e-01	k: 2202	n:20000
Cons ci ratio: 5.863531e-02	ci left: 1.772671e-01	ci right 1.880253e-01	k: 3652	n:20000
KS ci ratio: 8.513080e-02	ci left: 9.175502e-02	ci right 9.996291e-02	k: 1916	n:20000
CCDC13   20000 perm   4 sec   (4832 perm/sec)   p_kst 9.580000e-02   p_cons 1.826000e-01   p_joint 1.101000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC13.5_2208_20000_0.0958_0.1826_0.1101.png
                gene_name: CCDC13
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.100 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 30 percent done.
CCDC148
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.004673e-02	ci left: 7.846201e-01	ci right 8.006090e-01	k: 7927	n:10000
KS ci ratio: 1.092424e-02	ci left: 9.227580e-01	ci right 9.329911e-01	k: 9280	n:10000
CCDC148   10000 perm   2 sec   (5212 perm/sec)   p_kst 9.280000e-01   p_cons 7.927000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC148.5_1884_10000_0.928_0.7927_1.png
                gene_name: CCDC148
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
CCDC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
Cons ci ratio: 1.413942e-03	ci left: 9.979048e-01	ci right 9.993798e-01	k: 9988	n:10000
KS ci ratio: 3.634162e-01	ci left: 9.412543e-03	ci right 1.367914e-02	k: 114	n:10000
CCDC15   10000 perm   2 sec   (5121 perm/sec)   p_kst 1.140000e-02   p_cons 9.988000e-01   p_joint 2.810000e-02

Joint ci ratio: 1.301312e-01	ci left: 4.056926e-02	ci right 4.626445e-02	k: 867	n:20000
Cons ci ratio: 9.197125e-04	ci left: 9.983954e-01	ci right 9.993499e-01	k: 19979	n:20000
KS ci ratio: 2.564170e-01	ci left: 1.006870e-02	ci right 1.307582e-02	k: 230	n:20000
CCDC15   20000 perm   4 sec   (4695 perm/sec)   p_kst 1.150000e-02   p_cons 9.989500e-01   p_joint 4.335000e-02

Joint ci ratio: 1.108726e-01	ci left: 3.777809e-02	ci right 4.224489e-02	k: 1199	n:30000
Cons ci ratio: 6.665052e-04	ci left: 9.987701e-01	ci right 9.994606e-01	k: 29975	n:30000
KS ci ratio: 2.169337e-01	ci left: 9.598201e-03	ci right 1.196464e-02	k: 322	n:30000
CCDC15   30000 perm   7 sec   (4589 perm/sec)   p_kst 1.073333e-02   p_cons 9.991667e-01   p_joint 3.996667e-02

Joint ci ratio: 9.530756e-02	ci left: 3.863795e-02	ci right 4.252911e-02	k: 1622	n:40000
Cons ci ratio: 5.882280e-04	ci left: 9.987833e-01	ci right 9.993905e-01	k: 39965	n:40000
KS ci ratio: 1.882394e-01	ci left: 9.714880e-03	ci right 1.175708e-02	k: 428	n:40000
CCDC15   40000 perm   9 sec   (4500 perm/sec)   p_kst 1.070000e-02   p_cons 9.991250e-01   p_joint 4.055000e-02

Joint ci ratio: 9.827376e-02	ci left: 2.932240e-02	ci right 3.237239e-02	k: 1541	n:50000
Cons ci ratio: 5.434049e-04	ci left: 9.987502e-01	ci right 9.993092e-01	k: 49953	n:50000
KS ci ratio: 1.680899e-01	ci left: 9.855008e-03	ci right 1.168246e-02	k: 537	n:50000
CCDC15   50000 perm   11 sec   (4419 perm/sec)   p_kst 1.074000e-02   p_cons 9.990600e-01   p_joint 3.082000e-02

Joint ci ratio: 8.299173e-02	ci left: 3.436021e-02	ci right 3.735157e-02	k: 2150	n:60000
Cons ci ratio: 4.621498e-04	ci left: 9.989205e-01	ci right 9.993958e-01	k: 59951	n:60000
KS ci ratio: 1.533966e-01	ci left: 9.940253e-03	ci right 1.160758e-02	k: 645	n:60000
CCDC15   60000 perm   14 sec   (4343 perm/sec)   p_kst 1.075000e-02   p_cons 9.991833e-01   p_joint 3.583333e-02

Joint ci ratio: 7.604541e-02	ci left: 3.517897e-02	ci right 3.797390e-02	k: 2559	n:70000
Cons ci ratio: 4.481889e-04	ci left: 9.988487e-01	ci right 9.993083e-01	k: 69937	n:70000
KS ci ratio: 1.419861e-01	ci left: 1.000615e-02	ci right 1.154910e-02	k: 753	n:70000
CCDC15   70000 perm   16 sec   (4263 perm/sec)   p_kst 1.075714e-02   p_cons 9.991000e-01   p_joint 3.655714e-02

Joint ci ratio: 7.242491e-02	ci left: 3.404415e-02	ci right 3.661469e-02	k: 2825	n:80000
Cons ci ratio: 4.216958e-04	ci left: 9.988528e-01	ci right 9.992847e-01	k: 79927	n:80000
KS ci ratio: 1.341372e-01	ci left: 9.853554e-03	ci right 1.128227e-02	k: 844	n:80000
CCDC15   80000 perm   19 sec   (4187 perm/sec)   p_kst 1.055000e-02   p_cons 9.990875e-01   p_joint 3.531250e-02

Joint ci ratio: 7.208637e-02	ci left: 3.066319e-02	ci right 3.296712e-02	k: 2862	n:90000
Cons ci ratio: 3.993686e-04	ci left: 9.988569e-01	ci right 9.992654e-01	k: 89917	n:90000
KS ci ratio: 1.259729e-01	ci left: 9.973486e-03	ci right 1.132500e-02	k: 957	n:90000
CCDC15   90000 perm   22 sec   (4119 perm/sec)   p_kst 1.063333e-02   p_cons 9.990778e-01   p_joint 3.180000e-02

Joint ci ratio: 6.600408e-02	ci left: 3.294433e-02	ci right 3.520280e-02	k: 3406	n:100000
Cons ci ratio: 3.862529e-04	ci left: 9.988278e-01	ci right 9.992223e-01	k: 99904	n:100000
KS ci ratio: 1.186909e-01	ci left: 1.014918e-02	ci right 1.143943e-02	k: 1078	n:100000
CCDC15   100000 perm   25 sec   (4046 perm/sec)   p_kst 1.078000e-02   p_cons 9.990400e-01   p_joint 3.406000e-02

Joint ci ratio: 5.899287e-02	ci left: 3.745130e-02	ci right 3.973674e-02	k: 4244	n:110000
Cons ci ratio: 3.773234e-04	ci left: 9.987849e-01	ci right 9.991698e-01	k: 109889	n:110000
KS ci ratio: 1.124465e-01	ci left: 1.031245e-02	ci right 1.154990e-02	k: 1201	n:110000
CCDC15   110000 perm   28 sec   (3976 perm/sec)   p_kst 1.091818e-02   p_cons 9.989909e-01   p_joint 3.858182e-02

Joint ci ratio: 6.101759e-02	ci left: 3.223451e-02	ci right 3.427146e-02	k: 3989	n:120000
Cons ci ratio: 3.519936e-04	ci left: 9.988498e-01	ci right 9.992087e-01	k: 119885	n:120000
KS ci ratio: 1.083411e-01	ci left: 1.020665e-02	ci right 1.138383e-02	k: 1294	n:120000
CCDC15   120000 perm   31 sec   (3912 perm/sec)   p_kst 1.078333e-02   p_cons 9.990417e-01   p_joint 3.324167e-02

Joint ci ratio: 6.030755e-02	ci left: 3.052682e-02	ci right 3.243261e-02	k: 4091	n:130000
Cons ci ratio: 3.426453e-04	ci left: 9.988294e-01	ci right 9.991785e-01	k: 129872	n:130000
KS ci ratio: 1.040877e-01	ci left: 1.023024e-02	ci right 1.136098e-02	k: 1402	n:130000
CCDC15   130000 perm   34 sec   (3852 perm/sec)   p_kst 1.078462e-02   p_cons 9.990154e-01   p_joint 3.146923e-02

Joint ci ratio: 5.729188e-02	ci left: 3.142934e-02	ci right 3.329010e-02	k: 4529	n:140000
Cons ci ratio: 3.349965e-04	ci left: 9.988046e-01	ci right 9.991456e-01	k: 139858	n:140000
KS ci ratio: 1.002988e-01	ci left: 1.025122e-02	ci right 1.134061e-02	k: 1510	n:140000
CCDC15   140000 perm   37 sec   (3794 perm/sec)   p_kst 1.078571e-02   p_cons 9.989857e-01   p_joint 3.235000e-02

Joint ci ratio: 5.661258e-02	ci left: 3.009577e-02	ci right 3.185575e-02	k: 4645	n:150000
Cons ci ratio: 3.234111e-04	ci left: 9.988123e-01	ci right 9.991413e-01	k: 149848	n:150000
KS ci ratio: 9.683531e-02	ci left: 1.028307e-02	ci right 1.133596e-02	k: 1620	n:150000
CCDC15   150000 perm   40 sec   (3736 perm/sec)   p_kst 1.080000e-02   p_cons 9.989867e-01   p_joint 3.096667e-02

Outputting figure to mutsig2_images.part000000000031/CCDC15.5_2916_150000_0.0108_0.99899_0.030967.png
                gene_name: CCDC15
               theta_stop: 0.097 
                    nperm: 150000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 33 percent done.
CCDC18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.189121e-02	ci left: 2.773546e-01	ci right 2.951701e-01	k: 2862	n:10000
Cons ci ratio: 1.503491e-02	ci left: 8.650892e-01	ci right 8.782934e-01	k: 8718	n:10000
KS ci ratio: 9.549380e-02	ci left: 1.372712e-01	ci right 1.511368e-01	k: 1441	n:10000
CCDC18   10000 perm   2 sec   (4767 perm/sec)   p_kst 1.441000e-01   p_cons 8.718000e-01   p_joint 2.862000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC18.5_4366_10000_0.1441_0.8718_0.2862.png
                gene_name: CCDC18
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 34 percent done.
CCDC19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.776603e-02	ci left: 3.060990e-01	ci right 3.244087e-01	k: 3152	n:10000
Cons ci ratio: 6.929979e-02	ci left: 2.339280e-01	ci right 2.508223e-01	k: 2423	n:10000
KS ci ratio: 5.994992e-02	ci left: 2.904329e-01	ci right 3.084840e-01	k: 2994	n:10000
CCDC19   10000 perm   2 sec   (5954 perm/sec)   p_kst 2.994000e-01   p_cons 2.423000e-01   p_joint 3.152000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC19.5_1704_10000_0.2994_0.2423_0.3152.png
                gene_name: CCDC19
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 36 percent done.
CCDC22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.273839e-01	ci left: 8.096444e-02	ci right 9.207781e-02	k: 864	n:10000
Cons ci ratio: 3.073991e-01	ci left: 1.354008e-02	ci right 1.854760e-02	k: 159	n:10000
KS ci ratio: 2.999325e-02	ci left: 6.211539e-01	ci right 6.401699e-01	k: 6307	n:10000
CCDC22   10000 perm   2 sec   (5851 perm/sec)   p_kst 6.307000e-01   p_cons 1.590000e-02   p_joint 8.640000e-02

Joint ci ratio: 9.790809e-02	ci left: 7.055582e-02	ci right 7.786855e-02	k: 1483	n:20000
Cons ci ratio: 2.085981e-01	ci left: 1.553840e-02	ci right 1.920385e-02	k: 346	n:20000
KS ci ratio: 2.141477e-02	ci left: 6.194519e-01	ci right 6.329114e-01	k: 12524	n:20000
CCDC22   20000 perm   4 sec   (5262 perm/sec)   p_kst 6.262000e-01   p_cons 1.730000e-02   p_joint 7.415000e-02

Joint ci ratio: 8.830750e-02	ci left: 5.890524e-02	ci right 6.438003e-02	k: 1848	n:30000
Cons ci ratio: 1.666913e-01	ci left: 1.658962e-02	ci right 1.963806e-02	k: 542	n:30000
KS ci ratio: 1.742814e-02	ci left: 6.222343e-01	ci right 6.332076e-01	k: 18832	n:30000
CCDC22   30000 perm   6 sec   (5046 perm/sec)   p_kst 6.277333e-01   p_cons 1.806667e-02   p_joint 6.160000e-02

Joint ci ratio: 6.237101e-02	ci left: 8.706492e-02	ci right 9.269478e-02	k: 3594	n:40000
Cons ci ratio: 1.437540e-01	ci left: 1.693670e-02	ci right 1.958390e-02	k: 729	n:40000
KS ci ratio: 1.510975e-02	ci left: 6.224648e-01	ci right 6.319668e-01	k: 25089	n:40000
CCDC22   40000 perm   8 sec   (4884 perm/sec)   p_kst 6.272250e-01   p_cons 1.822500e-02   p_joint 8.985000e-02

Joint ci ratio: 5.930434e-02	ci left: 7.797186e-02	ci right 8.275700e-02	k: 4017	n:50000
Cons ci ratio: 1.292649e-01	ci left: 1.689143e-02	ci right 1.924500e-02	k: 902	n:50000
KS ci ratio: 1.350669e-02	ci left: 6.232450e-01	ci right 6.317402e-01	k: 31375	n:50000
CCDC22   50000 perm   11 sec   (4728 perm/sec)   p_kst 6.275000e-01   p_cons 1.804000e-02   p_joint 8.034000e-02

Joint ci ratio: 5.971876e-02	ci left: 6.499565e-02	ci right 6.901302e-02	k: 4019	n:60000
Cons ci ratio: 1.185944e-01	ci left: 1.682177e-02	ci right 1.895856e-02	k: 1072	n:60000
KS ci ratio: 1.231585e-02	ci left: 6.241515e-01	ci right 6.319028e-01	k: 37682	n:60000
CCDC22   60000 perm   13 sec   (4612 perm/sec)   p_kst 6.280333e-01   p_cons 1.786667e-02   p_joint 6.698333e-02

Joint ci ratio: 5.312904e-02	ci left: 7.023686e-02	ci right 7.408441e-02	k: 5050	n:70000
Cons ci ratio: 1.097898e-01	ci left: 1.690287e-02	ci right 1.888024e-02	k: 1251	n:70000
KS ci ratio: 1.138846e-02	ci left: 6.250082e-01	ci right 6.321811e-01	k: 44002	n:70000
CCDC22   70000 perm   16 sec   (4514 perm/sec)   p_kst 6.286000e-01   p_cons 1.787143e-02   p_joint 7.214286e-02

Joint ci ratio: 4.675319e-02	ci left: 7.888339e-02	ci right 8.267208e-02	k: 6461	n:80000
Cons ci ratio: 1.020423e-01	ci left: 1.718746e-02	ci right 1.904772e-02	k: 1448	n:80000
KS ci ratio: 1.076388e-02	ci left: 6.203823e-01	ci right 6.271087e-01	k: 49900	n:80000
CCDC22   80000 perm   18 sec   (4427 perm/sec)   p_kst 6.237500e-01   p_cons 1.810000e-02   p_joint 8.076250e-02

Joint ci ratio: 4.437469e-02	ci left: 7.801562e-02	ci right 8.156708e-02	k: 7180	n:90000
Cons ci ratio: 9.645154e-02	ci left: 1.715226e-02	ci right 1.890123e-02	k: 1621	n:90000
KS ci ratio: 1.013401e-02	ci left: 6.212377e-01	ci right 6.275765e-01	k: 56197	n:90000
CCDC22   90000 perm   21 sec   (4344 perm/sec)   p_kst 6.244111e-01   p_cons 1.801111e-02   p_joint 7.977778e-02

Outputting figure to mutsig2_images.part000000000031/CCDC22.5_1952_90000_0.62441_0.018011_0.079778.png
                gene_name: CCDC22
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.082 

Current progress: 38 percent done.
CCDC34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.710380e-02	ci left: 3.110592e-01	ci right 3.294457e-01	k: 3202	n:10000
Cons ci ratio: 6.261065e-02	ci left: 2.727001e-01	ci right 2.904273e-01	k: 2815	n:10000
KS ci ratio: 6.121662e-02	ci left: 2.818121e-01	ci right 2.997100e-01	k: 2907	n:10000
CCDC34   10000 perm   2 sec   (5773 perm/sec)   p_kst 2.907000e-01   p_cons 2.815000e-01   p_joint 3.202000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC34.5_1230_10000_0.2907_0.2815_0.3202.png
                gene_name: CCDC34
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 39 percent done.
CCDC113
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.718613e-02	ci left: 6.659215e-01	ci right 6.843764e-01	k: 6752	n:10000
KS ci ratio: 1.448544e-02	ci left: 8.733677e-01	ci right 8.862101e-01	k: 8799	n:10000
CCDC113   10000 perm   2 sec   (6648 perm/sec)   p_kst 8.799000e-01   p_cons 6.752000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC113.4_1170_10000_0.8799_0.6752_1.png
                gene_name: CCDC113
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
CCDC114
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.483523e-02	ci left: 2.071791e-01	ci right 2.233870e-01	k: 2152	n:10000
Cons ci ratio: 9.233604e-02	ci left: 1.456039e-01	ci right 1.597991e-01	k: 1526	n:10000
KS ci ratio: 7.154130e-02	ci left: 2.225711e-01	ci right 2.391859e-01	k: 2308	n:10000
CCDC114   10000 perm   2 sec   (5565 perm/sec)   p_kst 2.308000e-01   p_cons 1.526000e-01   p_joint 2.152000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC114.4_2065_10000_0.2308_0.1526_0.2152.png
                gene_name: CCDC114
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 43 percent done.
CCDC117
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.565491e-02	ci left: 6.910118e-01	ci right 7.090715e-01	k: 7001	n:10000
KS ci ratio: 2.513066e-02	ci left: 6.996848e-01	ci right 7.175935e-01	k: 7087	n:10000
CCDC117   10000 perm   2 sec   (6399 perm/sec)   p_kst 7.087000e-01   p_cons 7.001000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC117.4_860_10000_0.7087_0.7001_1.png
                gene_name: CCDC117
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
CCDC120
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.595455e-02	ci left: 6.860719e-01	ci right 7.042143e-01	k: 6952	n:10000
Cons ci ratio: 2.308428e-02	ci left: 7.338101e-01	ci right 7.510485e-01	k: 7425	n:10000
KS ci ratio: 3.548179e-02	ci left: 5.397853e-01	ci right 5.593858e-01	k: 5496	n:10000
CCDC120   10000 perm   2 sec   (5615 perm/sec)   p_kst 5.496000e-01   p_cons 7.425000e-01   p_joint 6.952000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC120.4_2044_10000_0.5496_0.7425_0.6952.png
                gene_name: CCDC120
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 46 percent done.
CCDC123
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.762096e-02	ci left: 6.588734e-01	ci right 6.774286e-01	k: 6682	n:10000
Cons ci ratio: 6.087703e-02	ci left: 2.840908e-01	ci right 3.020299e-01	k: 2930	n:10000
KS ci ratio: 2.523414e-02	ci left: 6.979701e-01	ci right 7.159092e-01	k: 7070	n:10000
CCDC123   10000 perm   2 sec   (5417 perm/sec)   p_kst 7.070000e-01   p_cons 2.930000e-01   p_joint 6.682000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC123.4_2428_10000_0.707_0.293_0.6682.png
                gene_name: CCDC123
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 48 percent done.
CCDC125
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.542912e-02	ci left: 6.947428e-01	ci right 7.127384e-01	k: 7038	n:10000
KS ci ratio: 5.725800e-03	ci left: 9.762092e-01	ci right 9.819069e-01	k: 9792	n:10000
CCDC125   10000 perm   2 sec   (5951 perm/sec)   p_kst 9.792000e-01   p_cons 7.038000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC125.4_1580_10000_0.9792_0.7038_1.png
                gene_name: CCDC125
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
CCDC132
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.097315e-02	ci left: 9.221388e-01	ci right 9.324107e-01	k: 9274	n:10000
KS ci ratio: 1.731320e-02	ci left: 8.294091e-01	ci right 8.439942e-01	k: 8368	n:10000
CCDC132   10000 perm   2 sec   (5474 perm/sec)   p_kst 8.368000e-01   p_cons 9.274000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC132.4_3049_10000_0.8368_0.9274_1.png
                gene_name: CCDC132
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
CCDC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.640648e-01	ci left: 4.955445e-02	ci right 5.850759e-02	k: 539	n:10000
Cons ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
KS ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
CCDC14   10000 perm   2 sec   (5469 perm/sec)   p_kst 1.890000e-01   p_cons 4.660000e-02   p_joint 5.390000e-02

Joint ci ratio: 1.231716e-01	ci left: 4.522388e-02	ci right 5.120834e-02	k: 963	n:20000
Cons ci ratio: 1.266618e-01	ci left: 4.279850e-02	ci right 4.863449e-02	k: 913	n:20000
KS ci ratio: 5.736144e-02	ci left: 1.838418e-01	ci right 1.947487e-01	k: 3785	n:20000
CCDC14   20000 perm   4 sec   (4745 perm/sec)   p_kst 1.892500e-01   p_cons 4.565000e-02   p_joint 4.815000e-02

Joint ci ratio: 9.043755e-02	ci left: 5.626197e-02	ci right 6.162384e-02	k: 1767	n:30000
Cons ci ratio: 1.033407e-01	ci left: 4.339680e-02	ci right 4.815833e-02	k: 1372	n:30000
KS ci ratio: 4.740797e-02	ci left: 1.811815e-01	ci right 1.900128e-01	k: 5567	n:30000
CCDC14   30000 perm   7 sec   (4612 perm/sec)   p_kst 1.855667e-01   p_cons 4.573333e-02   p_joint 5.890000e-02

Joint ci ratio: 8.153754e-02	ci left: 5.239340e-02	ci right 5.687153e-02	k: 2184	n:40000
Cons ci ratio: 8.840504e-02	ci left: 4.477511e-02	ci right 4.894099e-02	k: 1873	n:40000
KS ci ratio: 4.099221e-02	ci left: 1.822468e-01	ci right 1.898988e-01	k: 7442	n:40000
CCDC14   40000 perm   9 sec   (4508 perm/sec)   p_kst 1.860500e-01   p_cons 4.682500e-02   p_joint 5.460000e-02

Outputting figure to mutsig2_images.part000000000031/CCDC14.4_2787_40000_0.18605_0.046825_0.0546.png
                gene_name: CCDC14
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.057 

Current progress: 52 percent done.
CCDC146
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.740117e-02	ci left: 5.135553e-01	ci right 5.332311e-01	k: 5234	n:10000
Cons ci ratio: 3.229061e-02	ci left: 5.860046e-01	ci right 6.053396e-01	k: 5957	n:10000
KS ci ratio: 5.735389e-02	ci left: 3.091742e-01	ci right 3.275318e-01	k: 3183	n:10000
CCDC146   10000 perm   2 sec   (5282 perm/sec)   p_kst 3.183000e-01   p_cons 5.957000e-01   p_joint 5.234000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC146.4_2940_10000_0.3183_0.5957_0.5234.png
                gene_name: CCDC146
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 54 percent done.
CCDC150
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.941687e-02	ci left: 1.880620e-01	ci right 2.037156e-01	k: 1958	n:10000
Cons ci ratio: 7.959375e-02	ci left: 1.873727e-01	ci right 2.030052e-01	k: 1951	n:10000
KS ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
CCDC150   10000 perm   2 sec   (5055 perm/sec)   p_kst 1.864000e-01   p_cons 1.951000e-01   p_joint 1.958000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC150.4_3418_10000_0.1864_0.1951_0.1958.png
                gene_name: CCDC150
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 56 percent done.
CCDC21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.957621e-02	ci left: 6.276875e-01	ci right 6.466326e-01	k: 6372	n:10000
Cons ci ratio: 5.505688e-02	ci left: 3.270391e-01	ci right 3.456564e-01	k: 3363	n:10000
KS ci ratio: 1.960073e-02	ci left: 7.920233e-01	ci right 8.078016e-01	k: 8000	n:10000
CCDC21   10000 perm   2 sec   (5431 perm/sec)   p_kst 8.000000e-01   p_cons 3.363000e-01   p_joint 6.372000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC21.4_2341_10000_0.8_0.3363_0.6372.png
                gene_name: CCDC21
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 57 percent done.
CCDC28B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.589720e-02	ci left: 8.518204e-01	ci right 8.655699e-01	k: 8588	n:10000
Cons ci ratio: 2.761474e-02	ci left: 6.589740e-01	ci right 6.775279e-01	k: 6683	n:10000
KS ci ratio: 3.400848e-02	ci left: 5.607287e-01	ci right 5.802302e-01	k: 5705	n:10000
CCDC28B   10000 perm   2 sec   (6467 perm/sec)   p_kst 5.705000e-01   p_cons 6.683000e-01   p_joint 8.588000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC28B.4_623_10000_0.5705_0.6683_0.8588.png
                gene_name: CCDC28B
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 59 percent done.
CCDC37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.393222e-02	ci left: 5.618315e-01	ci right 5.813268e-01	k: 5716	n:10000
Cons ci ratio: 2.421431e-02	ci left: 7.149223e-01	ci right 7.325471e-01	k: 7238	n:10000
KS ci ratio: 5.140488e-02	ci left: 3.581397e-01	ci right 3.771375e-01	k: 3676	n:10000
CCDC37   10000 perm   2 sec   (5620 perm/sec)   p_kst 3.676000e-01   p_cons 7.238000e-01   p_joint 5.716000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC37.4_1900_10000_0.3676_0.7238_0.5716.png
                gene_name: CCDC37
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 61 percent done.
CCDC40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.842809e-02	ci left: 3.012392e-01	ci right 3.194714e-01	k: 3103	n:10000
Cons ci ratio: 4.447696e-02	ci left: 4.273475e-01	ci right 4.468891e-01	k: 4371	n:10000
KS ci ratio: 8.508072e-02	ci left: 1.675982e-01	ci right 1.825915e-01	k: 1750	n:10000
CCDC40   10000 perm   2 sec   (5024 perm/sec)   p_kst 1.750000e-01   p_cons 4.371000e-01   p_joint 3.103000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC40.4_3509_10000_0.175_0.4371_0.3103.png
                gene_name: CCDC40
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 62 percent done.
CCDC42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.037047e-03	ci left: 9.874126e-01	ci right 9.914948e-01	k: 9896	n:10000
KS ci ratio: 2.164184e-02	ci left: 7.579801e-01	ci right 7.746645e-01	k: 7664	n:10000
CCDC42   10000 perm   2 sec   (6377 perm/sec)   p_kst 7.664000e-01   p_cons 9.896000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC42.4_979_10000_0.7664_0.9896_1.png
                gene_name: CCDC42
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
CCDC109A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.668597e-01	ci left: 4.792139e-02	ci right 5.674170e-02	k: 522	n:10000
Cons ci ratio: 7.684031e-02	ci left: 1.985040e-01	ci right 2.144674e-01	k: 2064	n:10000
KS ci ratio: 2.696112e-01	ci left: 1.790635e-02	ci right 2.357766e-02	k: 206	n:10000
CCDC109A   10000 perm   2 sec   (6405 perm/sec)   p_kst 2.060000e-02   p_cons 2.064000e-01   p_joint 5.220000e-02

Joint ci ratio: 1.435362e-01	ci left: 3.336431e-02	ci right 3.857172e-02	k: 718	n:20000
Cons ci ratio: 5.405468e-02	ci left: 2.025412e-01	ci right 2.138438e-01	k: 4163	n:20000
KS ci ratio: 1.960353e-01	ci left: 1.767633e-02	ci right 2.156510e-02	k: 391	n:20000
CCDC109A   20000 perm   4 sec   (5663 perm/sec)   p_kst 1.955000e-02   p_cons 2.081500e-01   p_joint 3.590000e-02

Joint ci ratio: 1.464210e-01	ci left: 2.162257e-02	ci right 2.507059e-02	k: 699	n:30000
Cons ci ratio: 4.430590e-02	ci left: 2.023280e-01	ci right 2.115288e-01	k: 6207	n:30000
KS ci ratio: 1.603418e-01	ci left: 1.796530e-02	ci right 2.112871e-02	k: 585	n:30000
CCDC109A   30000 perm   6 sec   (5417 perm/sec)   p_kst 1.950000e-02   p_cons 2.069000e-01   p_joint 2.330000e-02

Joint ci ratio: 1.519060e-01	ci left: 1.512992e-02	ci right 1.764100e-02	k: 654	n:40000
Cons ci ratio: 3.847662e-02	ci left: 2.020456e-01	ci right 2.099971e-01	k: 8240	n:40000
KS ci ratio: 1.456973e-01	ci left: 1.647862e-02	ci right 1.909206e-02	k: 710	n:40000
CCDC109A   40000 perm   8 sec   (5248 perm/sec)   p_kst 1.775000e-02   p_cons 2.060000e-01   p_joint 1.635000e-02

Joint ci ratio: 1.388068e-01	ci left: 1.460925e-02	ci right 1.680750e-02	k: 784	n:50000
Cons ci ratio: 3.436050e-02	ci left: 2.029789e-01	ci right 2.100952e-01	k: 10326	n:50000
KS ci ratio: 1.314307e-01	ci left: 1.633003e-02	ci right 1.864648e-02	k: 873	n:50000
CCDC109A   50000 perm   10 sec   (5020 perm/sec)   p_kst 1.746000e-02   p_cons 2.065200e-01   p_joint 1.568000e-02

Joint ci ratio: 1.006651e-01	ci left: 2.340776e-02	ci right 2.590518e-02	k: 1478	n:60000
Cons ci ratio: 3.130052e-02	ci left: 2.039794e-01	ci right 2.104822e-01	k: 12433	n:60000
KS ci ratio: 1.136768e-01	ci left: 1.832754e-02	ci right 2.055262e-02	k: 1165	n:60000
CCDC109A   60000 perm   12 sec   (4898 perm/sec)   p_kst 1.941667e-02   p_cons 2.072167e-01   p_joint 2.463333e-02

Joint ci ratio: 9.518185e-02	ci left: 2.252997e-02	ci right 2.479546e-02	k: 1655	n:70000
Cons ci ratio: 2.895895e-02	ci left: 2.044441e-01	ci right 2.104658e-01	k: 14521	n:70000
KS ci ratio: 1.051000e-01	ci left: 1.846065e-02	ci right 2.052231e-02	k: 1363	n:70000
CCDC109A   70000 perm   15 sec   (4788 perm/sec)   p_kst 1.947143e-02   p_cons 2.074429e-01   p_joint 2.364286e-02

Joint ci ratio: 9.988738e-02	ci left: 1.794323e-02	ci right 1.984188e-02	k: 1510	n:80000
Cons ci ratio: 2.710055e-02	ci left: 2.044954e-01	ci right 2.101259e-01	k: 16584	n:80000
KS ci ratio: 9.863067e-02	ci left: 1.840666e-02	ci right 2.032842e-02	k: 1548	n:80000
CCDC109A   80000 perm   17 sec   (4686 perm/sec)   p_kst 1.935000e-02   p_cons 2.073000e-01   p_joint 1.887500e-02

Outputting figure to mutsig2_images.part000000000031/CCDC109A.3_1088_80000_0.01935_0.2073_0.018875.png
                gene_name: CCDC109A
               theta_stop: 0.100 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 66 percent done.
CCDC111
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.640853e-02	ci left: 6.786140e-01	ci right 6.968765e-01	k: 6878	n:10000
Cons ci ratio: 6.994737e-02	ci left: 2.305695e-01	ci right 2.473828e-01	k: 2389	n:10000
KS ci ratio: 1.795547e-02	ci left: 8.190349e-01	ci right 8.339744e-01	k: 8266	n:10000
CCDC111   10000 perm   2 sec   (5937 perm/sec)   p_kst 8.266000e-01   p_cons 2.389000e-01   p_joint 6.878000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC111.3_1731_10000_0.8266_0.2389_0.6878.png
                gene_name: CCDC111
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 67 percent done.
CCDC116
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.301242e-02	ci left: 3.440247e-01	ci right 3.628608e-01	k: 3534	n:10000
Cons ci ratio: 1.325683e-01	ci left: 7.504646e-02	ci right 8.579947e-02	k: 803	n:10000
KS ci ratio: 2.697569e-02	ci left: 6.693457e-01	ci right 6.877502e-01	k: 6786	n:10000
CCDC116   10000 perm   2 sec   (5906 perm/sec)   p_kst 6.786000e-01   p_cons 8.030000e-02   p_joint 3.534000e-01

Joint ci ratio: 3.508513e-02	ci left: 3.775010e-01	ci right 3.910327e-01	k: 7685	n:20000
Cons ci ratio: 9.264975e-02	ci left: 7.833140e-02	ci right 8.599059e-02	k: 1642	n:20000
KS ci ratio: 1.911470e-02	ci left: 6.711724e-01	ci right 6.841759e-01	k: 13554	n:20000
CCDC116   20000 perm   4 sec   (5268 perm/sec)   p_kst 6.777000e-01   p_cons 8.210000e-02   p_joint 3.842500e-01

Outputting figure to mutsig2_images.part000000000031/CCDC116.3_1858_20000_0.6777_0.0821_0.38425.png
                gene_name: CCDC116
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 69 percent done.
CCDC137
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.920312e-01	ci left: 3.614841e-02	ci right 4.392246e-02	k: 399	n:10000
Cons ci ratio: 1.046204e-01	ci left: 1.166232e-01	ci right 1.295972e-01	k: 1230	n:10000
KS ci ratio: 1.536584e-01	ci left: 5.638760e-02	ci right 6.587006e-02	k: 610	n:10000
CCDC137   10000 perm   2 sec   (6398 perm/sec)   p_kst 6.100000e-02   p_cons 1.230000e-01   p_joint 3.990000e-02

Joint ci ratio: 1.046962e-01	ci left: 6.206076e-02	ci right 6.896621e-02	k: 1309	n:20000
Cons ci ratio: 7.629437e-02	ci left: 1.121338e-01	ci right 1.210780e-01	k: 2331	n:20000
KS ci ratio: 1.098083e-01	ci left: 5.660168e-02	ci right 6.322698e-02	k: 1197	n:20000
CCDC137   20000 perm   4 sec   (5701 perm/sec)   p_kst 5.985000e-02   p_cons 1.165500e-01   p_joint 6.545000e-02

Joint ci ratio: 1.244748e-01	ci left: 3.000484e-02	ci right 3.401980e-02	k: 959	n:30000
Cons ci ratio: 6.194420e-02	ci left: 1.141068e-01	ci right 1.214341e-01	k: 3532	n:30000
KS ci ratio: 9.016690e-02	ci left: 5.658822e-02	ci right 6.196420e-02	k: 1777	n:30000
CCDC137   30000 perm   6 sec   (5429 perm/sec)   p_kst 5.923333e-02   p_cons 1.177333e-01   p_joint 3.196667e-02

Joint ci ratio: 9.943475e-02	ci left: 3.553733e-02	ci right 3.928021e-02	k: 1495	n:40000
Cons ci ratio: 5.365618e-02	ci left: 1.145573e-01	ci right 1.208983e-01	k: 4708	n:40000
KS ci ratio: 7.808127e-02	ci left: 5.695590e-02	ci right 6.160834e-02	k: 2370	n:40000
CCDC137   40000 perm   8 sec   (5242 perm/sec)   p_kst 5.925000e-02   p_cons 1.177000e-01   p_joint 3.737500e-02

Outputting figure to mutsig2_images.part000000000031/CCDC137.3_894_40000_0.05925_0.1177_0.037375.png
                gene_name: CCDC137
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 70 percent done.
CCDC138
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.243911e-02	ci left: 2.182281e-01	ci right 2.347315e-01	k: 2264	n:10000
Cons ci ratio: 1.588454e-01	ci left: 5.282421e-02	ci right 6.203572e-02	k: 573	n:10000
KS ci ratio: 6.478455e-03	ci left: 9.701607e-01	ci right 9.765595e-01	k: 9735	n:10000
CCDC138   10000 perm   2 sec   (5712 perm/sec)   p_kst 9.735000e-01   p_cons 5.730000e-02   p_joint 2.264000e-01

Joint ci ratio: 5.436813e-02	ci left: 2.006605e-01	ci right 2.119250e-01	k: 4125	n:20000
Cons ci ratio: 1.130035e-01	ci left: 5.353447e-02	ci right 5.999515e-02	k: 1134	n:20000
KS ci ratio: 4.514749e-03	ci left: 9.719077e-01	ci right 9.763530e-01	k: 19484	n:20000
CCDC138   20000 perm   4 sec   (5134 perm/sec)   p_kst 9.742000e-01   p_cons 5.670000e-02   p_joint 2.062500e-01

Joint ci ratio: 3.258417e-02	ci left: 3.200987e-01	ci right 3.307351e-01	k: 9762	n:30000
Cons ci ratio: 9.283262e-02	ci left: 5.348987e-02	ci right 5.872984e-02	k: 1682	n:30000
KS ci ratio: 3.750589e-03	ci left: 9.714127e-01	ci right 9.750949e-01	k: 29199	n:30000
CCDC138   30000 perm   6 sec   (4905 perm/sec)   p_kst 9.733000e-01   p_cons 5.606667e-02   p_joint 3.254000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC138.3_2058_30000_0.9733_0.056067_0.3254.png
                gene_name: CCDC138
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 72 percent done.
CCDC28A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.258663e-02	ci left: 1.449173e-01	ci right 1.590860e-01	k: 1519	n:10000
Cons ci ratio: 1.351440e-01	ci left: 7.233299e-02	ci right 8.291462e-02	k: 775	n:10000
KS ci ratio: 7.072525e-02	ci left: 2.266191e-01	ci right 2.433355e-01	k: 2349	n:10000
CCDC28A   10000 perm   2 sec   (6430 perm/sec)   p_kst 2.349000e-01   p_cons 7.750000e-02   p_joint 1.519000e-01

Joint ci ratio: 6.207284e-02	ci left: 1.610646e-01	ci right 1.714326e-01	k: 3324	n:20000
Cons ci ratio: 9.654455e-02	ci left: 7.246198e-02	ci right 7.986181e-02	k: 1522	n:20000
KS ci ratio: 5.024839e-02	ci left: 2.274031e-01	ci right 2.391745e-01	k: 4665	n:20000
CCDC28A   20000 perm   3 sec   (5730 perm/sec)   p_kst 2.332500e-01   p_cons 7.610000e-02   p_joint 1.662000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC28A.3_849_20000_0.23325_0.0761_0.1662.png
                gene_name: CCDC28A
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 74 percent done.
CCDC36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.515500e-02	ci left: 6.992813e-01	ci right 7.171972e-01	k: 7083	n:10000
Cons ci ratio: 4.836201e-03	ci left: 9.825290e-01	ci right 9.873825e-01	k: 9851	n:10000
KS ci ratio: 4.099081e-02	ci left: 4.677677e-01	ci right 4.874453e-01	k: 4776	n:10000
CCDC36   10000 perm   2 sec   (5954 perm/sec)   p_kst 4.776000e-01   p_cons 9.851000e-01   p_joint 7.083000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC36.3_1813_10000_0.4776_0.9851_0.7083.png
                gene_name: CCDC36
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 75 percent done.
CCDC47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.399846e-03	ci left: 9.410771e-01	ci right 9.500611e-01	k: 9457	n:10000
Cons ci ratio: 1.526929e-02	ci left: 8.615148e-01	ci right 8.748699e-01	k: 8683	n:10000
KS ci ratio: 2.528895e-02	ci left: 6.970623e-01	ci right 7.150175e-01	k: 7061	n:10000
CCDC47   10000 perm   2 sec   (5936 perm/sec)   p_kst 7.061000e-01   p_cons 8.683000e-01   p_joint 9.457000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC47.3_1500_10000_0.7061_0.8683_0.9457.png
                gene_name: CCDC47
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 77 percent done.
CCDC115
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.928483e-02	ci left: 1.543368e-01	ci right 1.688609e-01	k: 1615	n:10000
Cons ci ratio: 1.822407e-02	ci left: 8.146643e-01	ci right 8.297475e-01	k: 8223	n:10000
KS ci ratio: 1.627940e-01	ci left: 5.032338e-02	ci right 5.933816e-02	k: 547	n:10000
CCDC115   10000 perm   1 sec   (6787 perm/sec)   p_kst 5.470000e-02   p_cons 8.223000e-01   p_joint 1.615000e-01

Joint ci ratio: 6.283369e-02	ci left: 1.577571e-01	ci right 1.680411e-01	k: 3257	n:20000
Cons ci ratio: 1.293217e-02	ci left: 8.158684e-01	ci right 8.265380e-01	k: 16425	n:20000
KS ci ratio: 1.120129e-01	ci left: 5.445922e-02	ci right 6.097011e-02	k: 1153	n:20000
CCDC115   20000 perm   3 sec   (6012 perm/sec)   p_kst 5.765000e-02   p_cons 8.212500e-01   p_joint 1.628500e-01

Joint ci ratio: 5.153700e-02	ci left: 1.574840e-01	ci right 1.658482e-01	k: 4849	n:30000
Cons ci ratio: 1.060028e-02	ci left: 8.157059e-01	ci right 8.244320e-01	k: 24603	n:30000
KS ci ratio: 9.123533e-02	ci left: 5.531599e-02	ci right 6.063668e-02	k: 1738	n:30000
CCDC115   30000 perm   5 sec   (5692 perm/sec)   p_kst 5.793333e-02   p_cons 8.201000e-01   p_joint 1.616333e-01

Outputting figure to mutsig2_images.part000000000031/CCDC115.2_563_30000_0.057933_0.8201_0.16163.png
                gene_name: CCDC115
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 79 percent done.
CCDC121
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.254161e-02	ci left: 9.013439e-01	ci right 9.128177e-01	k: 9072	n:10000
KS ci ratio: 1.755303e-01	ci left: 4.331756e-02	ci right 5.174854e-02	k: 474	n:10000
CCDC121   10000 perm   2 sec   (6343 perm/sec)   p_kst 4.740000e-02   p_cons 9.072000e-01   p_joint 1

Joint ci ratio: 2.397801e-02	ci left: 5.650576e-01	ci right 5.788215e-01	k: 11439	n:20000
Cons ci ratio: 8.787606e-03	ci left: 9.046235e-01	ci right 9.126573e-01	k: 18174	n:20000
KS ci ratio: 1.257988e-01	ci left: 4.338038e-02	ci right 4.925242e-02	k: 925	n:20000
CCDC121   20000 perm   4 sec   (5398 perm/sec)   p_kst 4.625000e-02   p_cons 9.087000e-01   p_joint 5.719500e-01

Joint ci ratio: 1.966579e-02	ci left: 5.641409e-01	ci right 5.753789e-01	k: 17093	n:30000
Cons ci ratio: 7.250750e-03	ci left: 9.035896e-01	ci right 9.101980e-01	k: 27208	n:30000
KS ci ratio: 1.027151e-01	ci left: 4.391700e-02	ci right 4.870469e-02	k: 1388	n:30000
CCDC121   30000 perm   6 sec   (5120 perm/sec)   p_kst 4.626667e-02   p_cons 9.069333e-01   p_joint 5.697667e-01

Joint ci ratio: 1.897614e-02	ci left: 5.112391e-01	ci right 5.210585e-01	k: 20646	n:40000
Cons ci ratio: 6.311028e-03	ci left: 9.031741e-01	ci right 9.089168e-01	k: 36243	n:40000
KS ci ratio: 8.951312e-02	ci left: 4.369847e-02	ci right 4.781779e-02	k: 1829	n:40000
CCDC121   40000 perm   8 sec   (5026 perm/sec)   p_kst 4.572500e-02   p_cons 9.060750e-01   p_joint 5.161500e-01

Outputting figure to mutsig2_images.part000000000031/CCDC121.2_1331_40000_0.045725_0.90607_0.51615.png
                gene_name: CCDC121
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 80 percent done.
CCDC127
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.941687e-02	ci left: 1.880620e-01	ci right 2.037156e-01	k: 1958	n:10000
Cons ci ratio: 1.166260e-01	ci left: 9.555040e-02	ci right 1.074829e-01	k: 1014	n:10000
KS ci ratio: 3.871893e-02	ci left: 4.962503e-01	ci right 5.159461e-01	k: 5061	n:10000
CCDC127   10000 perm   1 sec   (6942 perm/sec)   p_kst 5.061000e-01   p_cons 1.014000e-01   p_joint 1.958000e-01

Joint ci ratio: 3.056110e-02	ci left: 4.443859e-01	ci right 4.582282e-01	k: 9026	n:20000
Cons ci ratio: 8.170914e-02	ci left: 9.896761e-02	ci right 1.074481e-01	k: 2063	n:20000
KS ci ratio: 2.767497e-02	ci left: 4.937958e-01	ci right 5.077040e-01	k: 10015	n:20000
CCDC127   20000 perm   3 sec   (6063 perm/sec)   p_kst 5.007500e-01   p_cons 1.031500e-01   p_joint 4.513000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC127.2_791_20000_0.50075_0.10315_0.4513.png
                gene_name: CCDC127
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 82 percent done.
CCDC144B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.848730e-02	ci left: 4.992504e-01	ci right 5.189443e-01	k: 5091	n:10000
KS ci ratio: 9.874809e-03	ci left: 9.355802e-01	ci right 9.449613e-01	k: 9404	n:10000
CCDC144B   10000 perm   2 sec   (5936 perm/sec)   p_kst 9.404000e-01   p_cons 5.091000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC144B.2_2217_10000_0.9404_0.5091_1.png
                gene_name: CCDC144B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
CCDC144NL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.421012e-02	ci left: 5.578216e-01	ci right 5.773390e-01	k: 5676	n:10000
Cons ci ratio: 1.292493e-02	ci left: 8.960051e-01	ci right 9.077596e-01	k: 9020	n:10000
KS ci ratio: 1.216940e-01	ci left: 8.825186e-02	ci right 9.978590e-02	k: 939	n:10000
CCDC144NL   10000 perm   1 sec   (6798 perm/sec)   p_kst 9.390000e-02   p_cons 9.020000e-01   p_joint 5.676000e-01

Joint ci ratio: 8.929802e-03	ci left: 9.018713e-01	ci right 9.100102e-01	k: 18120	n:20000
Cons ci ratio: 9.145660e-03	ci left: 8.976431e-01	ci right 9.059397e-01	k: 18037	n:20000
KS ci ratio: 8.726152e-02	ci left: 8.763679e-02	ci right 9.568239e-02	k: 1832	n:20000
CCDC144NL   20000 perm   3 sec   (6038 perm/sec)   p_kst 9.160000e-02   p_cons 9.018500e-01   p_joint 9.060000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC144NL.2_682_20000_0.0916_0.90185_0.906.png
                gene_name: CCDC144NL
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 85 percent done.
CCDC159
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.875766e-02	ci left: 4.957504e-01	ci right 5.154464e-01	k: 5056	n:10000
KS ci ratio: 5.082408e-02	ci left: 3.634102e-01	ci right 3.824638e-01	k: 3729	n:10000
CCDC159   10000 perm   2 sec   (6300 perm/sec)   p_kst 3.729000e-01   p_cons 5.056000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC159.2_938_10000_0.3729_0.5056_1.png
                gene_name: CCDC159
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
CCDC17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.778118e-03	ci left: 9.935271e-01	ci right 9.963728e-01	k: 9951	n:10000
Cons ci ratio: 1.648225e-02	ci left: 8.426459e-01	ci right 8.567497e-01	k: 8498	n:10000
KS ci ratio: 3.275514e-02	ci left: 5.790813e-01	ci right 5.984670e-01	k: 5888	n:10000
CCDC17   10000 perm   2 sec   (6287 perm/sec)   p_kst 5.888000e-01   p_cons 8.498000e-01   p_joint 9.951000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC17.2_1921_10000_0.5888_0.8498_0.9951.png
                gene_name: CCDC17
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1.00 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 89 percent done.
CCDC24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.633479e-02	ci left: 6.798232e-01	ci right 6.980666e-01	k: 6890	n:10000
KS ci ratio: 1.427232e-02	ci left: 8.765385e-01	ci right 8.892375e-01	k: 8830	n:10000
CCDC24   10000 perm   2 sec   (6560 perm/sec)   p_kst 8.830000e-01   p_cons 6.890000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC24.2_956_10000_0.883_0.689_1.png
                gene_name: CCDC24
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
CCDC50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.338395e-01	ci left: 7.368948e-02	ci right 8.435729e-02	k: 789	n:10000
Cons ci ratio: 2.079888e-01	ci left: 3.072413e-02	ci right 3.795045e-02	k: 342	n:10000
KS ci ratio: 2.141821e-02	ci left: 7.617251e-01	ci right 7.783173e-01	k: 7701	n:10000
CCDC50   10000 perm   2 sec   (6214 perm/sec)   p_kst 7.701000e-01   p_cons 3.420000e-02   p_joint 7.890000e-02

Joint ci ratio: 1.087976e-01	ci left: 5.762467e-02	ci right 6.430368e-02	k: 1218	n:20000
Cons ci ratio: 1.295859e-01	ci left: 4.090836e-02	ci right 4.662524e-02	k: 874	n:20000
KS ci ratio: 1.513425e-02	ci left: 7.644567e-01	ci right 7.761646e-01	k: 15407	n:20000
CCDC50   20000 perm   4 sec   (5611 perm/sec)   p_kst 7.703500e-01   p_cons 4.370000e-02   p_joint 6.090000e-02

Joint ci ratio: 7.841165e-02	ci left: 7.387676e-02	ci right 7.993881e-02	k: 2306	n:30000
Cons ci ratio: 1.068978e-01	ci left: 4.060227e-02	ci right 4.522012e-02	k: 1286	n:30000
KS ci ratio: 1.245655e-02	ci left: 7.626774e-01	ci right 7.722707e-01	k: 23025	n:30000
CCDC50   30000 perm   6 sec   (5367 perm/sec)   p_kst 7.675000e-01   p_cons 4.286667e-02   p_joint 7.686667e-02

Joint ci ratio: 7.052386e-02	ci left: 6.916580e-02	ci right 7.424658e-02	k: 2867	n:40000
Cons ci ratio: 9.254841e-02	ci left: 4.093499e-02	ci right 4.493171e-02	k: 1716	n:40000
KS ci ratio: 1.078618e-02	ci left: 7.633788e-01	ci right 7.716824e-01	k: 30702	n:40000
CCDC50   40000 perm   8 sec   (5201 perm/sec)   p_kst 7.675500e-01   p_cons 4.290000e-02   p_joint 7.167500e-02

Outputting figure to mutsig2_images.part000000000031/CCDC50.2_1497_40000_0.76755_0.0429_0.071675.png
                gene_name: CCDC50
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.074 

Current progress: 92 percent done.
CCDC52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.041202e-02	ci left: 7.785383e-01	ci right 7.946944e-01	k: 7867	n:10000
Cons ci ratio: 1.707186e-02	ci left: 8.332766e-01	ci right 8.477245e-01	k: 8406	n:10000
KS ci ratio: 3.682802e-02	ci left: 5.212613e-01	ci right 5.409206e-01	k: 5311	n:10000
CCDC52   10000 perm   2 sec   (5909 perm/sec)   p_kst 5.311000e-01   p_cons 8.406000e-01   p_joint 7.867000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC52.2_2636_10000_0.5311_0.8406_0.7867.png
                gene_name: CCDC52
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 93 percent done.
CCDC55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.281323e-02	ci left: 2.164518e-01	ci right 2.329089e-01	k: 2246	n:10000
Cons ci ratio: 9.408775e-02	ci left: 1.408974e-01	ci right 1.549084e-01	k: 1478	n:10000
KS ci ratio: 1.064407e-02	ci left: 9.262689e-01	ci right 9.362781e-01	k: 9314	n:10000
CCDC55   10000 perm   2 sec   (6170 perm/sec)   p_kst 9.314000e-01   p_cons 1.478000e-01   p_joint 2.246000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC55.2_1705_10000_0.9314_0.1478_0.2246.png
                gene_name: CCDC55
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 95 percent done.
CCDC57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.197272e-02	ci left: 4.559843e-01	ci right 4.756356e-01	k: 4658	n:10000
Cons ci ratio: 6.791337e-02	ci left: 2.413392e-01	ci right 2.584067e-01	k: 2498	n:10000
KS ci ratio: 2.554502e-02	ci left: 6.928268e-01	ci right 7.108555e-01	k: 7019	n:10000
CCDC57   10000 perm   2 sec   (5625 perm/sec)   p_kst 7.019000e-01   p_cons 2.498000e-01   p_joint 4.658000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC57.2_2812_10000_0.7019_0.2498_0.4658.png
                gene_name: CCDC57
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 97 percent done.
CCDC59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.608005e-02	ci left: 2.516216e-01	ci right 2.689183e-01	k: 2602	n:10000
Cons ci ratio: 1.291071e-01	ci left: 7.892613e-02	ci right 8.991738e-02	k: 843	n:10000
KS ci ratio: 2.230595e-02	ci left: 7.468514e-01	ci right 7.637996e-01	k: 7554	n:10000
CCDC59   10000 perm   1 sec   (6923 perm/sec)   p_kst 7.554000e-01   p_cons 8.430000e-02   p_joint 2.602000e-01

Joint ci ratio: 7.355390e-02	ci left: 1.197574e-01	ci right 1.289521e-01	k: 2486	n:20000
Cons ci ratio: 9.261904e-02	ci left: 7.838034e-02	ci right 8.604164e-02	k: 1643	n:20000
KS ci ratio: 1.585599e-02	ci left: 7.474151e-01	ci right 7.594111e-01	k: 15069	n:20000
CCDC59   20000 perm   3 sec   (6129 perm/sec)   p_kst 7.534500e-01   p_cons 8.215000e-02   p_joint 1.243000e-01

Outputting figure to mutsig2_images.part000000000031/CCDC59.2_742_20000_0.75345_0.08215_0.1243.png
                gene_name: CCDC59
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 98 percent done.
CCDC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.771718e-02	ci left: 5.093530e-01	ci right 5.290358e-01	k: 5192	n:10000
KS ci ratio: 2.030254e-02	ci left: 7.803626e-01	ci right 7.964690e-01	k: 7885	n:10000
CCDC6   10000 perm   2 sec   (6242 perm/sec)   p_kst 7.885000e-01   p_cons 5.192000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000031/CCDC6.2_1461_10000_0.7885_0.5192_1.png
                gene_name: CCDC6
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000031
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 31 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1713>
Subject: Job 9893874: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1713>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000032> was used as the working directory.
Started at Sat Oct  6 00:01:46 2012
Results reported at Sat Oct  6 00:22:20 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000032.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000032.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 32  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000032.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1260.03 sec.
    Max Memory :      3595 MB
    Max Swap   :      6054 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
32
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 32
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 32: processing genes 2796 - 2885
Calculating significance of each gene.
Using projection method.
2796	CCDC63	6.726412e-01
2797	CCDC64	1.533279e-01
2798	CCDC64B	5.340111e-01
2799	CCDC65	4.704323e-01
2800	CCDC66	7.162730e-01
2801	CCDC67	8.603237e-01
2802	CCDC68	6.215773e-01
2803	CCDC69	7.545348e-01
2804	CCDC7	3.567580e-01
2805	CCDC70	1.863695e-02
2806	CCDC71	1.882485e-01
2807	CCDC72	1
2808	CCDC73	4.725381e-01
2809	CCDC74A	8.125098e-01
2810	CCDC74B	9.320848e-01
2811	CCDC75	3.741341e-01
2812	CCDC76	2.412148e-01
2813	CCDC77	6.480883e-01
2814	CCDC78	1
2815	CCDC8	5.458044e-01
2816	CCDC80	8.136719e-02
2817	CCDC81	4.055778e-02
2818	CCDC82	3.632121e-01
2819	CCDC83	3.078153e-01
2820	CCDC84	1
2821	CCDC85A	1
2822	CCDC86	6.767864e-01
2823	CCDC87	9.886860e-01
2824	CCDC88A	3.569272e-02
2825	CCDC88B	9.987119e-01
2826	CCDC88C	6.158729e-01
2827	CCDC89	1
2828	CCDC9	2.551068e-01
2829	CCDC90A	6.304705e-01
2830	CCDC90B	2.585445e-01
2831	CCDC91	1.815513e-01
2832	CCDC92	3.257466e-01
2833	CCDC93	1.570359e-01
2834	CCDC94	1
2835	CCDC96	9.563534e-01
2836	CCDC97	6.557687e-01
2837	CCDC99	6.867979e-02
2838	CCHCR1	4.725581e-01
2839	CCIN	3.839979e-01
2840	CCK	4.609705e-01
2841	CCKAR	6.649617e-01
2842	CCKBR	2.492222e-01
2843	CCL1	1
2844	CCL11	1
2845	CCL13	2.848947e-01
2846	CCL14	1
2847	CCL15	3.554631e-01
2848	CCL16	1
2849	CCL17	1
2850	CCL18	3.052742e-02
2851	CCL19	1
2852	CCL2	1
2853	CCL20	1
2854	CCL21	1
2855	CCL22	5.319009e-01
2856	CCL23	1.622790e-01
2857	CCL24	1
2858	CCL25	1
2859	CCL26	1
2860	CCL27	9.385012e-03
2861	CCL28	1
2862	CCL3	1
2863	CCL4	1
2864	CCL5	1
2865	CCL7	6.775245e-02
2866	CCL8	2.417844e-01
2867	CCM2	6.139520e-01
2868	CCNA1	4.424433e-02
2869	CCNA2	1.605870e-01
2870	CCNB1	3.564839e-01
2871	CCNB1IP1	6.681115e-01
2872	CCNB2	5.004216e-01
2873	CCNB3	8.173296e-01
2874	CCNC	8.067748e-02
2875	CCND1	1
2876	CCND2	6.658990e-01
2877	CCND3	6.140224e-01
2878	CCNDBP1	8.291951e-01
2879	CCNE1	3.777237e-01
2880	CCNE2	6.600748e-01
2881	CCNF	7.865390e-01
2882	CCNG1	1.065267e-01
2883	CCNG2	1
2884	CCNH	3.113182e-01
2885	CCNI	8.284925e-01
Done

Running MutSig 2:
Scatter job 32: processing genes 2796 - 2885
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CCDC88A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.583430e-02	ci left: 5.348776e-01	ci right 5.544964e-01	k: 5447	n:10000
Cons ci ratio: 4.211635e-02	ci left: 4.542871e-01	ci right 4.739338e-01	k: 4641	n:10000
KS ci ratio: 5.024244e-02	ci left: 3.687815e-01	ci right 3.878894e-01	k: 3783	n:10000
CCDC88A   10000 perm   3 sec   (2991 perm/sec)   p_kst 3.783000e-01   p_cons 4.641000e-01   p_joint 5.447000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC88A.17_5744_10000_0.3783_0.4641_0.5447.png
                gene_name: CCDC88A
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 2 percent done.
CCDC80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.846975e-01	ci left: 3.910770e-02	ci right 4.716118e-02	k: 430	n:10000
Cons ci ratio: 3.365594e-02	ci left: 5.658420e-01	ci right 5.853140e-01	k: 5756	n:10000
KS ci ratio: 3.198132e-01	ci left: 1.243336e-02	ci right 1.725533e-02	k: 147	n:10000
CCDC80   10000 perm   2 sec   (4819 perm/sec)   p_kst 1.470000e-02   p_cons 5.756000e-01   p_joint 4.300000e-02

Joint ci ratio: 1.256566e-01	ci left: 4.347738e-02	ci right 4.935540e-02	k: 927	n:20000
Cons ci ratio: 2.382412e-02	ci left: 5.682136e-01	ci right 5.819646e-01	k: 11502	n:20000
KS ci ratio: 2.234803e-01	ci left: 1.345565e-02	ci right 1.688741e-02	k: 302	n:20000
CCDC80   20000 perm   5 sec   (4367 perm/sec)   p_kst 1.510000e-02   p_cons 5.751000e-01   p_joint 4.635000e-02

Joint ci ratio: 1.133043e-01	ci left: 3.618883e-02	ci right 4.056781e-02	k: 1150	n:30000
Cons ci ratio: 1.948854e-02	ci left: 5.685811e-01	ci right 5.798045e-01	k: 17226	n:30000
KS ci ratio: 1.761816e-01	ci left: 1.480177e-02	ci right 1.769301e-02	k: 486	n:30000
CCDC80   30000 perm   7 sec   (4169 perm/sec)   p_kst 1.620000e-02   p_cons 5.742000e-01   p_joint 3.833333e-02

Joint ci ratio: 8.258217e-02	ci left: 5.111865e-02	ci right 5.554648e-02	k: 2132	n:40000
Cons ci ratio: 1.663649e-02	ci left: 5.763719e-01	ci right 5.860663e-01	k: 23249	n:40000
KS ci ratio: 1.537051e-01	ci left: 1.476904e-02	ci right 1.725194e-02	k: 639	n:40000
CCDC80   40000 perm   10 sec   (4073 perm/sec)   p_kst 1.597500e-02   p_cons 5.812250e-01   p_joint 5.330000e-02

Joint ci ratio: 8.720780e-02	ci left: 3.714368e-02	ci right 4.055013e-02	k: 1941	n:50000
Cons ci ratio: 1.491830e-02	ci left: 5.756393e-01	ci right 5.843114e-01	k: 28999	n:50000
KS ci ratio: 1.370438e-01	ci left: 1.499564e-02	ci right 1.722105e-02	k: 804	n:50000
CCDC80   50000 perm   13 sec   (3991 perm/sec)   p_kst 1.608000e-02   p_cons 5.799800e-01   p_joint 3.882000e-02

Joint ci ratio: 6.950071e-02	ci left: 4.859740e-02	ci right 5.211293e-02	k: 3020	n:60000
Cons ci ratio: 1.360540e-02	ci left: 5.764892e-01	ci right 5.844030e-01	k: 34827	n:60000
KS ci ratio: 1.250377e-01	ci left: 1.510805e-02	ci right 1.713914e-02	k: 966	n:60000
CCDC80   60000 perm   15 sec   (3880 perm/sec)   p_kst 1.610000e-02   p_cons 5.804500e-01   p_joint 5.033333e-02

Joint ci ratio: 7.315725e-02	ci left: 3.795676e-02	ci right 4.085301e-02	k: 2757	n:70000
Cons ci ratio: 1.256979e-02	ci left: 5.778065e-01	ci right 5.851296e-01	k: 40703	n:70000
KS ci ratio: 1.156151e-01	ci left: 1.522222e-02	ci right 1.710391e-02	k: 1130	n:70000
CCDC80   70000 perm   19 sec   (3737 perm/sec)   p_kst 1.614286e-02   p_cons 5.814714e-01   p_joint 3.938571e-02

Joint ci ratio: 7.094189e-02	ci left: 3.545680e-02	ci right 3.807693e-02	k: 2940	n:80000
Cons ci ratio: 1.177271e-02	ci left: 5.774342e-01	ci right 5.842849e-01	k: 46469	n:80000
KS ci ratio: 1.085144e-01	ci left: 1.517835e-02	ci right 1.693200e-02	k: 1283	n:80000
CCDC80   80000 perm   22 sec   (3683 perm/sec)   p_kst 1.603750e-02   p_cons 5.808625e-01   p_joint 3.675000e-02

Joint ci ratio: 6.084246e-02	ci left: 4.274588e-02	ci right 4.543916e-02	k: 3967	n:90000
Cons ci ratio: 1.081383e-02	ci left: 5.902825e-01	ci right 5.967115e-01	k: 53415	n:90000
KS ci ratio: 1.035354e-01	ci left: 1.486544e-02	ci right 1.649933e-02	k: 1410	n:90000
CCDC80   90000 perm   25 sec   (3610 perm/sec)   p_kst 1.566667e-02   p_cons 5.935000e-01   p_joint 4.407778e-02

Joint ci ratio: 5.860094e-02	ci left: 4.157349e-02	ci right 4.409311e-02	k: 4282	n:100000
Cons ci ratio: 1.024531e-02	ci left: 5.910888e-01	ci right 5.971858e-01	k: 59414	n:100000
KS ci ratio: 9.821529e-02	ci left: 1.490932e-02	ci right 1.645896e-02	k: 1567	n:100000
CCDC80   100000 perm   28 sec   (3558 perm/sec)   p_kst 1.567000e-02   p_cons 5.941400e-01   p_joint 4.282000e-02

Outputting figure to mutsig2_images.part000000000032/CCDC80.11_2881_100000_0.01567_0.59414_0.04282.png
                gene_name: CCDC80
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.044 

Current progress: 4 percent done.
CCDC88C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.737222e-02	ci left: 6.629006e-01	ci right 6.813991e-01	k: 6722	n:10000
Cons ci ratio: 3.705039e-02	ci left: 5.182587e-01	ci right 5.379249e-01	k: 5281	n:10000
KS ci ratio: 4.215870e-02	ci left: 4.537880e-01	ci right 4.734332e-01	k: 4636	n:10000
CCDC88C   10000 perm   3 sec   (3776 perm/sec)   p_kst 4.636000e-01   p_cons 5.281000e-01   p_joint 6.722000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC88C.9_6207_10000_0.4636_0.5281_0.6722.png
                gene_name: CCDC88C
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 7 percent done.
CCDC99
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.536657e-02	ci left: 3.245569e-01	ci right 3.431400e-01	k: 3338	n:10000
Cons ci ratio: 2.127910e-02	ci left: 7.640535e-01	ci right 7.805875e-01	k: 7724	n:10000
KS ci ratio: 7.325487e-02	ci left: 2.143797e-01	ci right 2.307822e-01	k: 2225	n:10000
CCDC99   10000 perm   2 sec   (4874 perm/sec)   p_kst 2.225000e-01   p_cons 7.724000e-01   p_joint 3.338000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC99.8_1862_10000_0.2225_0.7724_0.3338.png
                gene_name: CCDC99
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 9 percent done.
CCDC73
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.355219e-02	ci left: 2.667599e-01	ci right 2.843710e-01	k: 2755	n:10000
Cons ci ratio: 3.841039e-02	ci left: 5.002504e-01	ci right 5.199437e-01	k: 5101	n:10000
KS ci ratio: 8.549534e-02	ci left: 1.662222e-01	ci right 1.811684e-01	k: 1736	n:10000
CCDC73   10000 perm   2 sec   (4446 perm/sec)   p_kst 1.736000e-01   p_cons 5.101000e-01   p_joint 2.755000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC73.7_3308_10000_0.1736_0.5101_0.2755.png
                gene_name: CCDC73
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 11 percent done.
CCDC81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.726408e-02	ci left: 1.605234e-01	ci right 1.752706e-01	k: 1678	n:10000
Cons ci ratio: 3.756639e-02	ci left: 5.113540e-01	ci right 5.310336e-01	k: 5212	n:10000
KS ci ratio: 1.273034e-01	ci left: 8.106153e-02	ci right 9.218067e-02	k: 865	n:10000
CCDC81   10000 perm   2 sec   (5247 perm/sec)   p_kst 8.650000e-02   p_cons 5.212000e-01   p_joint 1.678000e-01

Joint ci ratio: 5.728680e-02	ci left: 1.842373e-01	ci right 1.951530e-01	k: 3793	n:20000
Cons ci ratio: 2.653341e-02	ci left: 5.148493e-01	ci right 5.287443e-01	k: 10436	n:20000
KS ci ratio: 8.990531e-02	ci left: 8.288439e-02	ci right 9.073622e-02	k: 1735	n:20000
CCDC81   20000 perm   4 sec   (4744 perm/sec)   p_kst 8.675000e-02   p_cons 5.218000e-01   p_joint 1.896500e-01

Outputting figure to mutsig2_images.part000000000032/CCDC81.7_2019_20000_0.08675_0.5218_0.18965.png
                gene_name: CCDC81
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 13 percent done.
CCNB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.914040e-02	ci left: 7.996335e-01	ci right 8.151870e-01	k: 8075	n:10000
Cons ci ratio: 2.397830e-02	ci left: 7.188599e-01	ci right 7.364073e-01	k: 7277	n:10000
KS ci ratio: 3.432872e-02	ci left: 5.561176e-01	ci right 5.756439e-01	k: 5659	n:10000
CCNB3   10000 perm   2 sec   (4855 perm/sec)   p_kst 5.659000e-01   p_cons 7.277000e-01   p_joint 8.075000e-01

Outputting figure to mutsig2_images.part000000000032/CCNB3.7_4232_10000_0.5659_0.7277_0.8075.png
                gene_name: CCNB3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 15 percent done.
CCDC64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.468518e-02	ci left: 2.598323e-01	ci right 2.773027e-01	k: 2685	n:10000
Cons ci ratio: 5.214247e-02	ci left: 3.515781e-01	ci right 3.705029e-01	k: 3610	n:10000
KS ci ratio: 7.372364e-02	ci left: 2.122093e-01	ci right 2.285539e-01	k: 2203	n:10000
CCDC64   10000 perm   2 sec   (5317 perm/sec)   p_kst 2.203000e-01   p_cons 3.610000e-01   p_joint 2.685000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC64.6_1758_10000_0.2203_0.361_0.2685.png
                gene_name: CCDC64
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 17 percent done.
CCNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.005282e-02	ci left: 7.845188e-01	ci right 8.005105e-01	k: 7926	n:10000
Cons ci ratio: 2.318085e-02	ci left: 7.321932e-01	ci right 7.494663e-01	k: 7409	n:10000
KS ci ratio: 3.055584e-02	ci left: 6.124120e-01	ci right 6.315169e-01	k: 6220	n:10000
CCNA1   10000 perm   2 sec   (4850 perm/sec)   p_kst 6.220000e-01   p_cons 7.409000e-01   p_joint 7.926000e-01

Outputting figure to mutsig2_images.part000000000032/CCNA1.6_1434_10000_0.622_0.7409_0.7926.png
                gene_name: CCNA1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 20 percent done.
CCDC82
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.736601e-02	ci left: 6.630012e-01	ci right 6.814983e-01	k: 6723	n:10000
Cons ci ratio: 4.927397e-02	ci left: 3.779354e-01	ci right 3.971302e-01	k: 3875	n:10000
KS ci ratio: 2.638395e-02	ci left: 6.790170e-01	ci right 6.972732e-01	k: 6882	n:10000
CCDC82   10000 perm   2 sec   (5471 perm/sec)   p_kst 6.882000e-01   p_cons 3.875000e-01   p_joint 6.723000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC82.5_1663_10000_0.6882_0.3875_0.6723.png
                gene_name: CCDC82
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 22 percent done.
CCDC83
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.988973e-02	ci left: 2.308658e-01	ci right 2.476864e-01	k: 2392	n:10000
Cons ci ratio: 1.949659e-02	ci left: 7.937479e-01	ci right 8.094760e-01	k: 8017	n:10000
KS ci ratio: 9.480348e-02	ci left: 1.390351e-01	ci right 1.529718e-01	k: 1459	n:10000
CCDC83   10000 perm   2 sec   (5586 perm/sec)   p_kst 1.459000e-01   p_cons 8.017000e-01   p_joint 2.392000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC83.5_1379_10000_0.1459_0.8017_0.2392.png
                gene_name: CCDC83
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 24 percent done.
CCDC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.136378e-02	ci left: 7.626362e-01	ci right 7.792057e-01	k: 7710	n:10000
KS ci ratio: 2.670404e-02	ci left: 6.737778e-01	ci right 6.921155e-01	k: 6830	n:10000
CCDC9   10000 perm   2 sec   (4461 perm/sec)   p_kst 6.830000e-01   p_cons 7.710000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCDC9.5_1640_10000_0.683_0.771_1.png
                gene_name: CCDC9
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
CCDC93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.201483e-01	ci left: 9.039166e-02	ci right 1.020448e-01	k: 961	n:10000
Cons ci ratio: 5.234648e-02	ci left: 3.497889e-01	ci right 3.686932e-01	k: 3592	n:10000
KS ci ratio: 1.355230e-01	ci left: 7.194552e-02	ci right 8.250234e-02	k: 771	n:10000
CCDC93   10000 perm   2 sec   (5321 perm/sec)   p_kst 7.710000e-02   p_cons 3.592000e-01   p_joint 9.610000e-02

Joint ci ratio: 9.859149e-02	ci left: 6.962745e-02	ci right 7.689721e-02	k: 1464	n:20000
Cons ci ratio: 3.705869e-02	ci left: 3.520489e-01	ci right 3.653922e-01	k: 7174	n:20000
KS ci ratio: 9.716747e-02	ci left: 7.158212e-02	ci right 7.894193e-02	k: 1504	n:20000
CCDC93   20000 perm   5 sec   (4264 perm/sec)   p_kst 7.520000e-02   p_cons 3.587000e-01   p_joint 7.320000e-02

Outputting figure to mutsig2_images.part000000000032/CCDC93.5_1992_20000_0.0752_0.3587_0.0732.png
                gene_name: CCDC93
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.077 

Current progress: 28 percent done.
CCHCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.882633e-02	ci left: 1.557113e-01	ci right 1.702856e-01	k: 1629	n:10000
Cons ci ratio: 7.457047e-02	ci left: 2.083625e-01	ci right 2.246029e-01	k: 2164	n:10000
KS ci ratio: 1.221968e-01	ci left: 8.757121e-02	ci right 9.906697e-02	k: 932	n:10000
CCHCR1   10000 perm   2 sec   (4541 perm/sec)   p_kst 9.320000e-02   p_cons 2.164000e-01   p_joint 1.629000e-01

Joint ci ratio: 6.139857e-02	ci left: 1.640766e-01	ci right 1.745197e-01	k: 3385	n:20000
Cons ci ratio: 5.006648e-02	ci left: 2.286916e-01	ci right 2.404857e-01	k: 4691	n:20000
KS ci ratio: 8.694855e-02	ci left: 8.822495e-02	ci right 9.629404e-02	k: 1844	n:20000
CCHCR1   20000 perm   5 sec   (4309 perm/sec)   p_kst 9.220000e-02   p_cons 2.345500e-01   p_joint 1.692500e-01

Outputting figure to mutsig2_images.part000000000032/CCHCR1.5_2688_20000_0.0922_0.23455_0.16925.png
                gene_name: CCHCR1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 30 percent done.
CCKBR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.133555e-02	ci left: 2.810196e-01	ci right 2.989030e-01	k: 2899	n:10000
Cons ci ratio: 2.578935e-02	ci left: 6.887938e-01	ci right 7.068908e-01	k: 6979	n:10000
KS ci ratio: 1.006938e-01	ci left: 1.249344e-01	ci right 1.382810e-01	k: 1315	n:10000
CCKBR   10000 perm   2 sec   (5543 perm/sec)   p_kst 1.315000e-01   p_cons 6.979000e-01   p_joint 2.899000e-01

Joint ci ratio: 4.346596e-02	ci left: 2.827734e-01	ci right 2.953879e-01	k: 5781	n:20000
Cons ci ratio: 1.816718e-02	ci left: 6.930923e-01	ci right 7.058497e-01	k: 13990	n:20000
KS ci ratio: 7.129614e-02	ci left: 1.265990e-01	ci right 1.360085e-01	k: 2625	n:20000
CCKBR   20000 perm   4 sec   (4980 perm/sec)   p_kst 1.312500e-01   p_cons 6.995000e-01   p_joint 2.890500e-01

Outputting figure to mutsig2_images.part000000000032/CCKBR.5_1364_20000_0.13125_0.6995_0.28905.png
                gene_name: CCKBR
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 33 percent done.
CCDC65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.938381e-02	ci left: 1.540423e-01	ci right 1.685555e-01	k: 1612	n:10000
Cons ci ratio: 3.841039e-02	ci left: 5.002504e-01	ci right 5.199437e-01	k: 5101	n:10000
KS ci ratio: 1.140181e-01	ci left: 9.964203e-02	ci right 1.117887e-01	k: 1056	n:10000
CCDC65   10000 perm   2 sec   (5764 perm/sec)   p_kst 1.056000e-01   p_cons 5.101000e-01   p_joint 1.612000e-01

Joint ci ratio: 5.671559e-02	ci left: 1.873031e-01	ci right 1.982863e-01	k: 3855	n:20000
Cons ci ratio: 2.702941e-02	ci left: 5.055963e-01	ci right 5.195001e-01	k: 10251	n:20000
KS ci ratio: 8.122727e-02	ci left: 1.000476e-01	ci right 1.085678e-01	k: 2085	n:20000
CCDC65   20000 perm   4 sec   (5245 perm/sec)   p_kst 1.042500e-01   p_cons 5.125500e-01   p_joint 1.927500e-01

Outputting figure to mutsig2_images.part000000000032/CCDC65.4_1487_20000_0.10425_0.51255_0.19275.png
                gene_name: CCDC65
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 35 percent done.
CCDC70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.759865e-02	ci left: 1.953508e-01	ci right 2.112224e-01	k: 2032	n:10000
Cons ci ratio: 1.980258e-02	ci left: 7.886762e-01	ci right 8.045507e-01	k: 7967	n:10000
KS ci ratio: 1.312415e-01	ci left: 7.650089e-02	ci right 8.734413e-02	k: 818	n:10000
CCDC70   10000 perm   2 sec   (4808 perm/sec)   p_kst 8.180000e-02   p_cons 7.967000e-01   p_joint 2.032000e-01

Joint ci ratio: 5.014328e-02	ci left: 2.281465e-01	ci right 2.399310e-01	k: 4680	n:20000
Cons ci ratio: 1.385955e-02	ci left: 7.943880e-01	ci right 8.055247e-01	k: 16000	n:20000
KS ci ratio: 9.268048e-02	ci left: 7.828247e-02	ci right 8.593954e-02	k: 1641	n:20000
CCDC70   20000 perm   5 sec   (4373 perm/sec)   p_kst 8.205000e-02   p_cons 8.000000e-01   p_joint 2.340000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC70.4_706_20000_0.08205_0.8_0.234.png
                gene_name: CCDC70
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 37 percent done.
CCDC71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.880677e-02	ci left: 6.398548e-01	ci right 6.586581e-01	k: 6493	n:10000
KS ci ratio: 1.663683e-02	ci left: 8.402009e-01	ci right 8.543961e-01	k: 8474	n:10000
CCDC71   10000 perm   2 sec   (5546 perm/sec)   p_kst 8.474000e-01   p_cons 6.493000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCDC71.4_1408_10000_0.8474_0.6493_1.png
                gene_name: CCDC71
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
CCDC76
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.634162e-01	ci left: 9.412543e-03	ci right 1.367914e-02	k: 114	n:10000
Cons ci ratio: 1.275454e-01	ci left: 8.077027e-02	ci right 9.187210e-02	k: 862	n:10000
KS ci ratio: 8.984102e-01	ci left: 1.067132e-03	ci right 2.843290e-03	k: 18	n:10000
CCDC76   10000 perm   2 sec   (5318 perm/sec)   p_kst 1.800000e-03   p_cons 8.620000e-02   p_joint 1.140000e-02

Joint ci ratio: 3.613336e-01	ci left: 4.794950e-03	ci right 6.952521e-03	k: 116	n:20000
Cons ci ratio: 9.539674e-02	ci left: 7.412433e-02	ci right 8.159894e-02	k: 1556	n:20000
KS ci ratio: 7.273797e-01	ci left: 9.304852e-04	ci right 2.022759e-03	k: 28	n:20000
CCDC76   20000 perm   4 sec   (4874 perm/sec)   p_kst 1.400000e-03   p_cons 7.780000e-02   p_joint 5.800000e-03

Joint ci ratio: 3.933177e-01	ci left: 2.652810e-03	ci right 3.979598e-03	k: 98	n:30000
Cons ci ratio: 7.470326e-02	ci left: 8.091761e-02	ci right 8.722988e-02	k: 2521	n:30000
KS ci ratio: 5.329553e-01	ci left: 1.323626e-03	ci right 2.310215e-03	k: 53	n:30000
CCDC76   30000 perm   6 sec   (4746 perm/sec)   p_kst 1.766667e-03   p_cons 8.403333e-02   p_joint 3.266667e-03

Joint ci ratio: 4.583767e-01	ci left: 1.408647e-03	ci right 2.266273e-03	k: 72	n:40000
Cons ci ratio: 6.495559e-02	ci left: 8.073293e-02	ci right 8.617772e-02	k: 3337	n:40000
KS ci ratio: 4.492219e-01	ci left: 1.475083e-03	ci right 2.349770e-03	k: 75	n:40000
CCDC76   40000 perm   9 sec   (4434 perm/sec)   p_kst 1.875000e-03   p_cons 8.342500e-02   p_joint 1.800000e-03

Joint ci ratio: 4.435018e-01	ci left: 1.215529e-03	ci right 1.924365e-03	k: 77	n:50000
Cons ci ratio: 5.750992e-02	ci left: 8.256968e-02	ci right 8.747862e-02	k: 4250	n:50000
KS ci ratio: 4.151451e-01	ci left: 1.411803e-03	ci right 2.167926e-03	k: 88	n:50000
CCDC76   50000 perm   12 sec   (4263 perm/sec)   p_kst 1.760000e-03   p_cons 8.500000e-02   p_joint 1.540000e-03

Joint ci ratio: 4.750964e-01	ci left: 8.655029e-04	ci right 1.417913e-03	k: 67	n:60000
Cons ci ratio: 5.251721e-02	ci left: 8.273090e-02	ci right 8.720934e-02	k: 5097	n:60000
KS ci ratio: 3.936464e-01	ci left: 1.326212e-03	ci right 1.990155e-03	k: 98	n:60000
CCDC76   60000 perm   14 sec   (4184 perm/sec)   p_kst 1.633333e-03   p_cons 8.495000e-02   p_joint 1.116667e-03

Joint ci ratio: 4.682920e-01	ci left: 7.670230e-04	ci right 1.247321e-03	k: 69	n:70000
Cons ci ratio: 4.864687e-02	ci left: 8.281699e-02	ci right 8.696035e-02	k: 5941	n:70000
KS ci ratio: 3.717722e-01	ci left: 1.291695e-03	ci right 1.893691e-03	k: 110	n:70000
CCDC76   70000 perm   17 sec   (4087 perm/sec)   p_kst 1.571429e-03   p_cons 8.487143e-02   p_joint 9.857143e-04

Joint ci ratio: 4.751648e-01	ci left: 6.491081e-04	ci right 1.063475e-03	k: 67	n:80000
Cons ci ratio: 4.547888e-02	ci left: 8.303920e-02	ci right 8.691596e-02	k: 6797	n:80000
KS ci ratio: 3.475654e-01	ci left: 1.312181e-03	ci right 1.874957e-03	k: 126	n:80000
CCDC76   80000 perm   20 sec   (4020 perm/sec)   p_kst 1.575000e-03   p_cons 8.496250e-02   p_joint 8.375000e-04

Joint ci ratio: 4.586126e-01	ci left: 6.260017e-04	ci right 1.007363e-03	k: 72	n:90000
Cons ci ratio: 4.296624e-02	ci left: 8.283376e-02	ci right 8.648195e-02	k: 7618	n:90000
KS ci ratio: 3.298630e-01	ci left: 1.308716e-03	ci right 1.835359e-03	k: 140	n:90000
CCDC76   90000 perm   23 sec   (3970 perm/sec)   p_kst 1.555556e-03   p_cons 8.464444e-02   p_joint 8.000000e-04

Joint ci ratio: 2.516808e-01	ci left: 2.115612e-03	ci right 2.733814e-03	k: 241	n:100000
Cons ci ratio: 4.224701e-02	ci left: 7.759288e-02	ci right 8.095157e-02	k: 7926	n:100000
KS ci ratio: 3.116104e-01	ci left: 1.334172e-03	ci right 1.835450e-03	k: 157	n:100000
CCDC76   100000 perm   25 sec   (3930 perm/sec)   p_kst 1.570000e-03   p_cons 7.926000e-02   p_joint 2.410000e-03

Joint ci ratio: 4.275418e-01	ci left: 6.010347e-04	ci right 9.352880e-04	k: 83	n:110000
Cons ci ratio: 3.869472e-02	ci left: 8.368275e-02	ci right 8.699370e-02	k: 9386	n:110000
KS ci ratio: 2.960870e-01	ci left: 1.355657e-03	ci right 1.834874e-03	k: 174	n:110000
CCDC76   110000 perm   28 sec   (3893 perm/sec)   p_kst 1.581818e-03   p_cons 8.532727e-02   p_joint 7.545455e-04

Joint ci ratio: 4.107701e-01	ci left: 6.031304e-04	ci right 9.217981e-04	k: 90	n:120000
Cons ci ratio: 3.704811e-02	ci left: 8.375024e-02	ci right 8.691983e-02	k: 10239	n:120000
KS ci ratio: 2.819396e-01	ci left: 1.381821e-03	ci right 1.842802e-03	k: 192	n:120000
CCDC76   120000 perm   31 sec   (3857 perm/sec)   p_kst 1.600000e-03   p_cons 8.532500e-02   p_joint 7.500000e-04

Joint ci ratio: 4.381328e-01	ci left: 4.811443e-04	ci right 7.573092e-04	k: 79	n:130000
Cons ci ratio: 3.558299e-02	ci left: 8.386330e-02	ci right 8.690907e-02	k: 11099	n:130000
KS ci ratio: 2.671196e-01	ci left: 1.433123e-03	ci right 1.881884e-03	k: 214	n:130000
CCDC76   130000 perm   34 sec   (3821 perm/sec)   p_kst 1.646154e-03   p_cons 8.537692e-02   p_joint 6.076923e-04

Joint ci ratio: 2.238457e-01	ci left: 1.941134e-03	ci right 2.436988e-03	k: 305	n:140000
Cons ci ratio: 3.428996e-02	ci left: 8.391272e-02	ci right 8.684734e-02	k: 11952	n:140000
KS ci ratio: 2.571464e-01	ci left: 1.444210e-03	ci right 1.876850e-03	k: 231	n:140000
CCDC76   140000 perm   37 sec   (3780 perm/sec)   p_kst 1.650000e-03   p_cons 8.537143e-02   p_joint 2.178571e-03

Joint ci ratio: 2.192436e-01	ci left: 1.893578e-03	ci right 2.365998e-03	k: 318	n:150000
Cons ci ratio: 3.308602e-02	ci left: 8.415578e-02	ci right 8.699359e-02	k: 12835	n:150000
KS ci ratio: 2.477151e-01	ci left: 1.460341e-03	ci right 1.879299e-03	k: 249	n:150000
CCDC76   150000 perm   40 sec   (3734 perm/sec)   p_kst 1.660000e-03   p_cons 8.556667e-02   p_joint 2.120000e-03

Joint ci ratio: 2.231469e-01	ci left: 1.710269e-03	ci right 2.145596e-03	k: 307	n:160000
Cons ci ratio: 3.203762e-02	ci left: 8.419010e-02	ci right 8.693744e-02	k: 13689	n:160000
KS ci ratio: 2.443257e-01	ci left: 1.410118e-03	ci right 1.808291e-03	k: 256	n:160000
CCDC76   160000 perm   43 sec   (3690 perm/sec)   p_kst 1.600000e-03   p_cons 8.555625e-02   p_joint 1.918750e-03

Joint ci ratio: 2.353373e-01	ci left: 1.437752e-03	ci right 1.826619e-03	k: 276	n:170000
Cons ci ratio: 3.106195e-02	ci left: 8.432677e-02	ci right 8.699326e-02	k: 14561	n:170000
KS ci ratio: 2.397109e-01	ci left: 1.382424e-03	ci right 1.764309e-03	k: 266	n:170000
CCDC76   170000 perm   47 sec   (3648 perm/sec)   p_kst 1.564706e-03   p_cons 8.565294e-02   p_joint 1.623529e-03

Joint ci ratio: 2.296080e-01	ci left: 1.431125e-03	ci right 1.807441e-03	k: 290	n:180000
Cons ci ratio: 3.017886e-02	ci left: 8.440524e-02	ci right 8.699701e-02	k: 15425	n:180000
KS ci ratio: 2.332490e-01	ci left: 1.384020e-03	ci right 1.754553e-03	k: 281	n:180000
CCDC76   180000 perm   50 sec   (3609 perm/sec)   p_kst 1.561111e-03   p_cons 8.569444e-02   p_joint 1.611111e-03

Joint ci ratio: 2.353576e-01	ci left: 1.286398e-03	ci right 1.634361e-03	k: 276	n:190000
Cons ci ratio: 2.935916e-02	ci left: 8.451824e-02	ci right 8.704179e-02	k: 16297	n:190000
KS ci ratio: 2.288316e-01	ci left: 1.365719e-03	ci right 1.723450e-03	k: 292	n:190000
CCDC76   190000 perm   53 sec   (3557 perm/sec)   p_kst 1.536842e-03   p_cons 8.577368e-02   p_joint 1.452632e-03

Joint ci ratio: 2.362217e-01	ci left: 1.212663e-03	ci right 1.542062e-03	k: 274	n:200000
Cons ci ratio: 2.861467e-02	ci left: 8.455621e-02	ci right 8.701581e-02	k: 17156	n:200000
KS ci ratio: 2.253997e-01	ci left: 1.339871e-03	ci right 1.684836e-03	k: 301	n:200000
CCDC76   200000 perm   57 sec   (3514 perm/sec)   p_kst 1.505000e-03   p_cons 8.578000e-02   p_joint 1.370000e-03

Joint ci ratio: 2.384096e-01	ci left: 1.132518e-03	ci right 1.443416e-03	k: 269	n:210000
Cons ci ratio: 2.788432e-02	ci left: 8.481369e-02	ci right 8.721680e-02	k: 18062	n:210000
KS ci ratio: 2.186253e-01	ci left: 1.361515e-03	ci right 1.700102e-03	k: 320	n:210000
CCDC76   210000 perm   60 sec   (3473 perm/sec)   p_kst 1.523810e-03   p_cons 8.600952e-02   p_joint 1.280952e-03

Joint ci ratio: 2.550328e-01	ci left: 9.360252e-04	ci right 1.213753e-03	k: 235	n:220000
Cons ci ratio: 2.826911e-02	ci left: 7.923994e-02	ci right 8.151659e-02	k: 17682	n:220000
KS ci ratio: 2.133719e-01	ci left: 1.368422e-03	ci right 1.699480e-03	k: 336	n:220000
CCDC76   220000 perm   64 sec   (3430 perm/sec)   p_kst 1.527273e-03   p_cons 8.037273e-02   p_joint 1.068182e-03

Joint ci ratio: 2.508186e-01	ci left: 9.279059e-04	ci right 1.197965e-03	k: 243	n:230000
Cons ci ratio: 2.764593e-02	ci left: 7.927459e-02	ci right 8.150122e-02	k: 18488	n:230000
KS ci ratio: 2.073069e-01	ci left: 1.391304e-03	ci right 1.717117e-03	k: 356	n:230000
CCDC76   230000 perm   68 sec   (3377 perm/sec)   p_kst 1.547826e-03   p_cons 8.038261e-02   p_joint 1.056522e-03

Joint ci ratio: 1.760087e-01	ci left: 1.880965e-03	ci right 2.247894e-03	k: 494	n:240000
Cons ci ratio: 2.611623e-02	ci left: 8.469486e-02	ci right 8.694015e-02	k: 20595	n:240000
KS ci ratio: 2.044654e-01	ci left: 1.372850e-03	ci right 1.689384e-03	k: 366	n:240000
CCDC76   240000 perm   72 sec   (3330 perm/sec)   p_kst 1.525000e-03   p_cons 8.581250e-02   p_joint 2.058333e-03

Joint ci ratio: 1.810320e-01	ci left: 1.702537e-03	ci right 2.045177e-03	k: 467	n:250000
Cons ci ratio: 2.561351e-02	ci left: 8.456577e-02	ci right 8.676385e-02	k: 21415	n:250000
KS ci ratio: 1.991101e-01	ci left: 1.393896e-03	ci right 1.705843e-03	k: 386	n:250000
CCDC76   250000 perm   77 sec   (3251 perm/sec)   p_kst 1.544000e-03   p_cons 8.566000e-02   p_joint 1.868000e-03

Joint ci ratio: 1.832083e-01	ci left: 1.596667e-03	ci right 1.922293e-03	k: 456	n:260000
Cons ci ratio: 2.512268e-02	ci left: 8.454643e-02	ci right 8.670128e-02	k: 22261	n:260000
KS ci ratio: 1.965885e-01	ci left: 1.376840e-03	ci right 1.680600e-03	k: 396	n:260000
CCDC76   260000 perm   81 sec   (3206 perm/sec)   p_kst 1.523077e-03   p_cons 8.561923e-02   p_joint 1.753846e-03

Joint ci ratio: 1.911272e-01	ci left: 1.406899e-03	ci right 1.707666e-03	k: 419	n:270000
Cons ci ratio: 2.463338e-02	ci left: 8.469095e-02	ci right 8.680684e-02	k: 23151	n:270000
KS ci ratio: 1.929768e-01	ci left: 1.378692e-03	ci right 1.676616e-03	k: 411	n:270000
CCDC76   270000 perm   86 sec   (3147 perm/sec)   p_kst 1.522222e-03   p_cons 8.574444e-02   p_joint 1.551852e-03

Joint ci ratio: 1.871580e-01	ci left: 1.417895e-03	ci right 1.714003e-03	k: 437	n:280000
Cons ci ratio: 2.419418e-02	ci left: 8.467989e-02	ci right 8.675726e-02	k: 24000	n:280000
KS ci ratio: 1.886740e-01	ci left: 1.394070e-03	ci right 1.687831e-03	k: 430	n:280000
CCDC76   280000 perm   90 sec   (3098 perm/sec)   p_kst 1.535714e-03   p_cons 8.571429e-02   p_joint 1.560714e-03

Joint ci ratio: 1.487302e-01	ci left: 2.211896e-03	ci right 2.570578e-03	k: 692	n:290000
Cons ci ratio: 2.380333e-02	ci left: 8.450186e-02	ci right 8.654092e-02	k: 24800	n:290000
KS ci ratio: 1.922872e-01	ci left: 1.293450e-03	ci right 1.571838e-03	k: 414	n:290000
CCDC76   290000 perm   95 sec   (3061 perm/sec)   p_kst 1.427586e-03   p_cons 8.551724e-02   p_joint 2.386207e-03

Joint ci ratio: 1.482012e-01	ci left: 2.154209e-03	ci right 2.502183e-03	k: 697	n:300000
Cons ci ratio: 2.339887e-02	ci left: 8.454815e-02	ci right 8.655319e-02	k: 25664	n:300000
KS ci ratio: 1.895667e-01	ci left: 1.288423e-03	ci right 1.561354e-03	k: 426	n:300000
CCDC76   300000 perm   99 sec   (3024 perm/sec)   p_kst 1.420000e-03   p_cons 8.554667e-02   p_joint 2.323333e-03

Joint ci ratio: 1.474675e-01	ci left: 2.106460e-03	ci right 2.444888e-03	k: 704	n:310000
Cons ci ratio: 2.303286e-02	ci left: 8.446659e-02	ci right 8.643794e-02	k: 26489	n:310000
KS ci ratio: 1.869586e-01	ci left: 1.283746e-03	ci right 1.551520e-03	k: 438	n:310000
CCDC76   310000 perm   104 sec   (2989 perm/sec)   p_kst 1.412903e-03   p_cons 8.544839e-02   p_joint 2.270968e-03

Joint ci ratio: 1.455205e-01	ci left: 2.097831e-03	ci right 2.430036e-03	k: 723	n:320000
Cons ci ratio: 2.268623e-02	ci left: 8.437170e-02	ci right 8.631082e-02	k: 27308	n:320000
KS ci ratio: 1.836415e-01	ci left: 1.291310e-03	ci right 1.555351e-03	k: 454	n:320000
CCDC76   320000 perm   108 sec   (2955 perm/sec)   p_kst 1.418750e-03   p_cons 8.533750e-02   p_joint 2.259375e-03

Joint ci ratio: 1.518576e-01	ci left: 1.862104e-03	ci right 2.170988e-03	k: 664	n:330000
Cons ci ratio: 2.234437e-02	ci left: 8.435513e-02	ci right 8.626428e-02	k: 28151	n:330000
KS ci ratio: 1.806870e-01	ci left: 1.295562e-03	ci right 1.555744e-03	k: 469	n:330000
CCDC76   330000 perm   113 sec   (2920 perm/sec)   p_kst 1.421212e-03   p_cons 8.530606e-02   p_joint 2.012121e-03

Joint ci ratio: 1.543231e-01	ci left: 1.747929e-03	ci right 2.043017e-03	k: 643	n:340000
Cons ci ratio: 2.200175e-02	ci left: 8.445095e-02	ci right 8.633259e-02	k: 29032	n:340000
KS ci ratio: 1.784242e-01	ci left: 1.291165e-03	ci right 1.546866e-03	k: 481	n:340000
CCDC76   340000 perm   118 sec   (2892 perm/sec)   p_kst 1.414706e-03   p_cons 8.538824e-02   p_joint 1.891176e-03

Joint ci ratio: 1.523261e-01	ci left: 1.744696e-03	ci right 2.035079e-03	k: 660	n:350000
Cons ci ratio: 2.165188e-02	ci left: 8.470357e-02	ci right 8.656044e-02	k: 29970	n:350000
KS ci ratio: 1.758882e-01	ci left: 1.292501e-03	ci right 1.544442e-03	k: 495	n:350000
CCDC76   350000 perm   122 sec   (2858 perm/sec)   p_kst 1.414286e-03   p_cons 8.562857e-02   p_joint 1.885714e-03

Joint ci ratio: 1.531446e-01	ci left: 1.677526e-03	ci right 1.958368e-03	k: 653	n:360000
Cons ci ratio: 2.137305e-02	ci left: 8.454153e-02	ci right 8.637070e-02	k: 30763	n:360000
KS ci ratio: 1.722773e-01	ci left: 1.312391e-03	ci right 1.562411e-03	k: 516	n:360000
CCDC76   360000 perm   127 sec   (2826 perm/sec)   p_kst 1.433333e-03   p_cons 8.545278e-02   p_joint 1.813889e-03

Joint ci ratio: 1.797462e-01	ci left: 1.168398e-03	ci right 1.401687e-03	k: 474	n:370000
Cons ci ratio: 2.185213e-02	ci left: 7.913855e-02	ci right 8.088966e-02	k: 29604	n:370000
KS ci ratio: 1.701517e-01	ci left: 1.310550e-03	ci right 1.556823e-03	k: 529	n:370000
CCDC76   370000 perm   133 sec   (2789 perm/sec)   p_kst 1.429730e-03   p_cons 8.001081e-02   p_joint 1.281081e-03

Joint ci ratio: 1.778842e-01	ci left: 1.162788e-03	ci right 1.392293e-03	k: 484	n:380000
Cons ci ratio: 2.156698e-02	ci left: 7.912099e-02	ci right 8.084858e-02	k: 30393	n:380000
KS ci ratio: 1.687263e-01	ci left: 1.298741e-03	ci right 1.540543e-03	k: 538	n:380000
CCDC76   380000 perm   138 sec   (2759 perm/sec)   p_kst 1.415789e-03   p_cons 7.998158e-02   p_joint 1.273684e-03

Joint ci ratio: 1.764361e-01	ci left: 1.152576e-03	ci right 1.378016e-03	k: 492	n:390000
Cons ci ratio: 2.128455e-02	ci left: 7.916061e-02	ci right 8.086615e-02	k: 31204	n:390000
KS ci ratio: 1.676428e-01	ci left: 1.282632e-03	ci right 1.519747e-03	k: 545	n:390000
CCDC76   390000 perm   143 sec   (2730 perm/sec)   p_kst 1.397436e-03   p_cons 8.001026e-02   p_joint 1.261538e-03

Joint ci ratio: 1.757265e-01	ci left: 1.133320e-03	ci right 1.354007e-03	k: 496	n:400000
Cons ci ratio: 2.103221e-02	ci left: 7.906403e-02	ci right 8.074706e-02	k: 31961	n:400000
KS ci ratio: 1.653862e-01	ci left: 1.286504e-03	ci right 1.520814e-03	k: 560	n:400000
CCDC76   400000 perm   148 sec   (2694 perm/sec)   p_kst 1.400000e-03   p_cons 7.990250e-02   p_joint 1.240000e-03

Joint ci ratio: 1.755525e-01	ci left: 1.108008e-03	ci right 1.323530e-03	k: 497	n:410000
Cons ci ratio: 2.076486e-02	ci left: 7.913978e-02	ci right 8.080275e-02	k: 32787	n:410000
KS ci ratio: 1.632184e-01	ci left: 1.290207e-03	ci right 1.521809e-03	k: 575	n:410000
CCDC76   410000 perm   154 sec   (2666 perm/sec)   p_kst 1.402439e-03   p_cons 7.996829e-02   p_joint 1.212195e-03

Joint ci ratio: 1.750280e-01	ci left: 1.088456e-03	ci right 1.299475e-03	k: 500	n:420000
Cons ci ratio: 2.052006e-02	ci left: 7.912199e-02	ci right 8.076476e-02	k: 33575	n:420000
KS ci ratio: 1.601864e-01	ci left: 1.309751e-03	ci right 1.540073e-03	k: 597	n:420000
CCDC76   420000 perm   159 sec   (2639 perm/sec)   p_kst 1.421429e-03   p_cons 7.994048e-02   p_joint 1.190476e-03

Joint ci ratio: 1.733073e-01	ci left: 1.085385e-03	ci right 1.293523e-03	k: 510	n:430000
Cons ci ratio: 2.028307e-02	ci left: 7.910978e-02	ci right 8.073310e-02	k: 34365	n:430000
KS ci ratio: 1.587337e-01	ci left: 1.303851e-03	ci right 1.530859e-03	k: 608	n:430000
CCDC76   430000 perm   165 sec   (2610 perm/sec)   p_kst 1.413953e-03   p_cons 7.991860e-02   p_joint 1.186047e-03

Joint ci ratio: 1.708177e-01	ci left: 1.093340e-03	ci right 1.299682e-03	k: 525	n:440000
Cons ci ratio: 2.003554e-02	ci left: 7.923396e-02	ci right 8.083976e-02	k: 35215	n:440000
KS ci ratio: 1.564380e-01	ci left: 1.313515e-03	ci right 1.538587e-03	k: 626	n:440000
CCDC76   440000 perm   171 sec   (2572 perm/sec)   p_kst 1.422727e-03   p_cons 8.003409e-02   p_joint 1.193182e-03

Joint ci ratio: 1.693754e-01	ci left: 1.088192e-03	ci right 1.291651e-03	k: 534	n:450000
Cons ci ratio: 1.981118e-02	ci left: 7.924655e-02	ci right 8.083442e-02	k: 36017	n:450000
KS ci ratio: 1.549625e-01	ci left: 1.309953e-03	ci right 1.532101e-03	k: 638	n:450000
CCDC76   450000 perm   177 sec   (2548 perm/sec)   p_kst 1.417778e-03   p_cons 8.003778e-02   p_joint 1.186667e-03

Joint ci ratio: 1.681238e-01	ci left: 1.081192e-03	ci right 1.281698e-03	k: 542	n:460000
Cons ci ratio: 1.958870e-02	ci left: 7.929981e-02	ci right 8.087070e-02	k: 36838	n:460000
KS ci ratio: 1.542414e-01	ci left: 1.294014e-03	ci right 1.512344e-03	k: 644	n:460000
CCDC76   460000 perm   183 sec   (2518 perm/sec)   p_kst 1.400000e-03   p_cons 8.008261e-02   p_joint 1.178261e-03

Joint ci ratio: 1.741712e-01	ci left: 9.828312e-04	ci right 1.172342e-03	k: 505	n:470000
Cons ci ratio: 1.937523e-02	ci left: 7.933819e-02	ci right 8.089252e-02	k: 37653	n:470000
KS ci ratio: 1.513347e-01	ci left: 1.317641e-03	ci right 1.535388e-03	k: 669	n:470000
CCDC76   470000 perm   189 sec   (2489 perm/sec)   p_kst 1.423404e-03   p_cons 8.011277e-02   p_joint 1.074468e-03

Joint ci ratio: 1.750411e-01	ci left: 9.523928e-04	ci right 1.137048e-03	k: 500	n:480000
Cons ci ratio: 1.917862e-02	ci left: 7.929832e-02	ci right 8.083592e-02	k: 38431	n:480000
KS ci ratio: 1.505514e-01	ci left: 1.304222e-03	ci right 1.518535e-03	k: 676	n:480000
CCDC76   480000 perm   195 sec   (2466 perm/sec)   p_kst 1.408333e-03   p_cons 8.006458e-02   p_joint 1.041667e-03

Joint ci ratio: 1.769988e-01	ci left: 9.114945e-04	ci right 1.090409e-03	k: 489	n:490000
Cons ci ratio: 1.898656e-02	ci left: 7.927030e-02	ci right 8.079181e-02	k: 39214	n:490000
KS ci ratio: 1.494523e-01	ci left: 1.297247e-03	ci right 1.508719e-03	k: 686	n:490000
CCDC76   490000 perm   201 sec   (2439 perm/sec)   p_kst 1.400000e-03   p_cons 8.002857e-02   p_joint 9.979592e-04

Joint ci ratio: 1.746960e-01	ci left: 9.181205e-04	ci right 1.095743e-03	k: 502	n:500000
Cons ci ratio: 1.880603e-02	ci left: 7.919769e-02	ci right 8.070319e-02	k: 39974	n:500000
KS ci ratio: 1.480582e-01	ci left: 1.296334e-03	ci right 1.505512e-03	k: 699	n:500000
CCDC76   500000 perm   207 sec   (2418 perm/sec)   p_kst 1.398000e-03   p_cons 7.994800e-02   p_joint 1.004000e-03

Joint ci ratio: 1.729850e-01	ci left: 9.188729e-04	ci right 1.094718e-03	k: 512	n:510000
Cons ci ratio: 1.862335e-02	ci left: 7.918460e-02	ci right 8.067508e-02	k: 40763	n:510000
KS ci ratio: 1.471162e-01	ci left: 1.287911e-03	ci right 1.494291e-03	k: 708	n:510000
CCDC76   510000 perm   213 sec   (2397 perm/sec)   p_kst 1.388235e-03   p_cons 7.992745e-02   p_joint 1.003922e-03

Joint ci ratio: 1.729867e-01	ci left: 9.012015e-04	ci right 1.073667e-03	k: 512	n:520000
Cons ci ratio: 1.843577e-02	ci left: 7.925252e-02	ci right 8.072909e-02	k: 41594	n:520000
KS ci ratio: 1.454835e-01	ci left: 1.292787e-03	ci right 1.497449e-03	k: 724	n:520000
CCDC76   520000 perm   219 sec   (2370 perm/sec)   p_kst 1.392308e-03   p_cons 7.998846e-02   p_joint 9.846154e-04

Joint ci ratio: 1.719845e-01	ci left: 8.950295e-04	ci right 1.065218e-03	k: 518	n:530000
Cons ci ratio: 1.826053e-02	ci left: 7.926346e-02	ci right 8.072604e-02	k: 42396	n:530000
KS ci ratio: 1.443926e-01	ci left: 1.288396e-03	ci right 1.490702e-03	k: 735	n:530000
CCDC76   530000 perm   226 sec   (2348 perm/sec)   p_kst 1.386792e-03   p_cons 7.999245e-02   p_joint 9.773585e-04

Joint ci ratio: 1.700297e-01	ci left: 8.997262e-04	ci right 1.068664e-03	k: 530	n:540000
Cons ci ratio: 1.809202e-02	ci left: 7.925930e-02	ci right 8.070817e-02	k: 43190	n:540000
KS ci ratio: 1.435185e-01	ci left: 1.280603e-03	ci right 1.480364e-03	k: 744	n:540000
CCDC76   540000 perm   232 sec   (2327 perm/sec)   p_kst 1.377778e-03   p_cons 7.998148e-02   p_joint 9.814815e-04

Joint ci ratio: 1.676771e-01	ci left: 9.094882e-04	ci right 1.077658e-03	k: 545	n:550000
Cons ci ratio: 1.792631e-02	ci left: 7.926984e-02	ci right 8.070550e-02	k: 43992	n:550000
KS ci ratio: 1.420949e-01	ci left: 1.283618e-03	ci right 1.481694e-03	k: 759	n:550000
CCDC76   550000 perm   238 sec   (2307 perm/sec)   p_kst 1.380000e-03   p_cons 7.998545e-02   p_joint 9.909091e-04

Joint ci ratio: 1.654195e-01	ci left: 9.189170e-04	ci right 1.086314e-03	k: 560	n:560000
Cons ci ratio: 1.775474e-02	ci left: 7.936543e-02	ci right 8.078892e-02	k: 44842	n:560000
KS ci ratio: 1.410780e-01	ci left: 1.279643e-03	ci right 1.475574e-03	k: 770	n:560000
CCDC76   560000 perm   245 sec   (2285 perm/sec)   p_kst 1.375000e-03   p_cons 8.007500e-02   p_joint 1.000000e-03

Joint ci ratio: 1.654209e-01	ci left: 9.027950e-04	ci right 1.067257e-03	k: 560	n:570000
Cons ci ratio: 1.760203e-02	ci left: 7.934065e-02	ci right 8.075134e-02	k: 45625	n:570000
KS ci ratio: 1.399930e-01	ci left: 1.277505e-03	ci right 1.471479e-03	k: 782	n:570000
CCDC76   570000 perm   252 sec   (2263 perm/sec)   p_kst 1.371930e-03   p_cons 8.004386e-02   p_joint 9.824561e-04

Joint ci ratio: 1.675279e-01	ci left: 8.640958e-04	ci right 1.023715e-03	k: 546	n:580000
Cons ci ratio: 1.745810e-02	ci left: 7.927557e-02	ci right 8.067345e-02	k: 46384	n:580000
KS ci ratio: 1.391959e-01	ci left: 1.270454e-03	ci right 1.462168e-03	k: 791	n:580000
CCDC76   580000 perm   259 sec   (2241 perm/sec)   p_kst 1.363793e-03   p_cons 7.997241e-02   p_joint 9.413793e-04

Joint ci ratio: 1.661665e-01	ci left: 8.640674e-04	ci right 1.022255e-03	k: 555	n:590000
Cons ci ratio: 1.731645e-02	ci left: 7.922287e-02	ci right 8.060838e-02	k: 47149	n:590000
KS ci ratio: 1.380674e-01	ci left: 1.270191e-03	ci right 1.460183e-03	k: 804	n:590000
CCDC76   590000 perm   266 sec   (2218 perm/sec)   p_kst 1.362712e-03   p_cons 7.991356e-02   p_joint 9.406780e-04

Joint ci ratio: 1.655728e-01	ci left: 8.560559e-04	ci right 1.012161e-03	k: 559	n:600000
Cons ci ratio: 1.717605e-02	ci left: 7.919023e-02	ci right 8.056383e-02	k: 47925	n:600000
KS ci ratio: 1.370499e-01	ci left: 1.268333e-03	ci right 1.456535e-03	k: 816	n:600000
CCDC76   600000 perm   273 sec   (2198 perm/sec)   p_kst 1.360000e-03   p_cons 7.987500e-02   p_joint 9.316667e-04

Joint ci ratio: 1.655740e-01	ci left: 8.420217e-04	ci right 9.955687e-04	k: 559	n:610000
Cons ci ratio: 1.703919e-02	ci left: 7.915708e-02	ci right 8.051905e-02	k: 48700	n:610000
KS ci ratio: 1.359725e-01	ci left: 1.268124e-03	ci right 1.454696e-03	k: 829	n:610000
CCDC76   610000 perm   280 sec   (2176 perm/sec)   p_kst 1.359016e-03   p_cons 7.983607e-02   p_joint 9.163934e-04

Joint ci ratio: 1.815221e-01	ci left: 6.833941e-04	ci right 8.213398e-04	k: 465	n:620000
Cons ci ratio: 1.690872e-02	ci left: 7.909772e-02	ci right 8.044815e-02	k: 49458	n:620000
KS ci ratio: 1.343626e-01	ci left: 1.278838e-03	ci right 1.464581e-03	k: 849	n:620000
CCDC76   620000 perm   288 sec   (2156 perm/sec)   p_kst 1.369355e-03   p_cons 7.977097e-02   p_joint 7.500000e-04

Joint ci ratio: 1.823079e-01	ci left: 6.664860e-04	ci right 8.016654e-04	k: 461	n:630000
Cons ci ratio: 1.677956e-02	ci left: 7.905451e-02	ci right 8.039380e-02	k: 50225	n:630000
KS ci ratio: 1.327322e-01	ci left: 1.290759e-03	ci right 1.475779e-03	k: 870	n:630000
CCDC76   630000 perm   295 sec   (2139 perm/sec)   p_kst 1.380952e-03   p_cons 7.972222e-02   p_joint 7.317460e-04

Joint ci ratio: 1.811357e-01	ci left: 6.650207e-04	ci right 7.989404e-04	k: 467	n:640000
Cons ci ratio: 1.665012e-02	ci left: 7.904072e-02	ci right 8.036934e-02	k: 51010	n:640000
KS ci ratio: 1.318274e-01	ci left: 1.288721e-03	ci right 1.472091e-03	k: 882	n:640000
CCDC76   640000 perm   302 sec   (2121 perm/sec)   p_kst 1.378125e-03   p_cons 7.970312e-02   p_joint 7.296875e-04

Joint ci ratio: 1.790432e-01	ci left: 6.709500e-04	ci right 8.043339e-04	k: 478	n:650000
Cons ci ratio: 1.651342e-02	ci left: 7.911781e-02	ci right 8.043671e-02	k: 51854	n:650000
KS ci ratio: 1.313825e-01	ci left: 1.277820e-03	ci right 1.458978e-03	k: 888	n:650000
CCDC76   650000 perm   309 sec   (2103 perm/sec)   p_kst 1.366154e-03   p_cons 7.977538e-02   p_joint 7.353846e-04

Joint ci ratio: 1.799868e-01	ci left: 6.535482e-04	ci right 7.842319e-04	k: 473	n:660000
Cons ci ratio: 1.637682e-02	ci left: 7.922129e-02	ci right 8.053088e-02	k: 52717	n:660000
KS ci ratio: 1.307230e-01	ci left: 1.271649e-03	ci right 1.450956e-03	k: 897	n:660000
CCDC76   660000 perm   316 sec   (2086 perm/sec)   p_kst 1.359091e-03   p_cons 7.987424e-02   p_joint 7.166667e-04

Joint ci ratio: 1.833072e-01	ci left: 6.195732e-04	ci right 7.460028e-04	k: 456	n:670000
Cons ci ratio: 1.625543e-02	ci left: 7.921466e-02	ci right 8.051435e-02	k: 53508	n:670000
KS ci ratio: 1.302171e-01	ci left: 1.262775e-03	ci right 1.440089e-03	k: 904	n:670000
CCDC76   670000 perm   324 sec   (2070 perm/sec)   p_kst 1.349254e-03   p_cons 7.986269e-02   p_joint 6.805970e-04

Joint ci ratio: 1.823128e-01	ci left: 6.174782e-04	ci right 7.427213e-04	k: 461	n:680000
Cons ci ratio: 1.613217e-02	ci left: 7.924929e-02	ci right 8.053959e-02	k: 54327	n:680000
KS ci ratio: 1.292918e-01	ci left: 1.262702e-03	ci right 1.438649e-03	k: 917	n:680000
CCDC76   680000 perm   332 sec   (2049 perm/sec)   p_kst 1.348529e-03   p_cons 7.989265e-02   p_joint 6.779412e-04

Joint ci ratio: 1.445142e-01	ci left: 9.882297e-04	ci right 1.143544e-03	k: 734	n:690000
Cons ci ratio: 1.601452e-02	ci left: 7.925695e-02	ci right 8.053788e-02	k: 55128	n:690000
KS ci ratio: 1.283170e-01	ci left: 1.264038e-03	ci right 1.438742e-03	k: 931	n:690000
CCDC76   690000 perm   340 sec   (2031 perm/sec)   p_kst 1.349275e-03   p_cons 7.989565e-02   p_joint 1.063768e-03

Joint ci ratio: 1.440258e-01	ci left: 9.809969e-04	ci right 1.134609e-03	k: 739	n:700000
Cons ci ratio: 1.589724e-02	ci left: 7.928436e-02	ci right 8.055626e-02	k: 55943	n:700000
KS ci ratio: 1.274314e-01	ci left: 1.263958e-03	ci right 1.437354e-03	k: 944	n:700000
CCDC76   700000 perm   348 sec   (2012 perm/sec)   p_kst 1.348571e-03   p_cons 7.991857e-02   p_joint 1.055714e-03

Joint ci ratio: 1.491592e-01	ci left: 8.993368e-04	ci right 1.045629e-03	k: 689	n:710000
Cons ci ratio: 1.577903e-02	ci left: 7.934330e-02	ci right 8.060660e-02	k: 56781	n:710000
KS ci ratio: 1.266964e-01	ci left: 1.261156e-03	ci right 1.433095e-03	k: 955	n:710000
CCDC76   710000 perm   355 sec   (1997 perm/sec)   p_kst 1.345070e-03   p_cons 7.997324e-02   p_joint 9.704225e-04

Joint ci ratio: 1.480899e-01	ci left: 9.002185e-04	ci right 1.045511e-03	k: 699	n:720000
Cons ci ratio: 1.566490e-02	ci left: 7.938681e-02	ci right 8.064157e-02	k: 57609	n:720000
KS ci ratio: 1.257138e-01	ci left: 1.263816e-03	ci right 1.434681e-03	k: 970	n:720000
CCDC76   720000 perm   363 sec   (1983 perm/sec)   p_kst 1.347222e-03   p_cons 8.001250e-02   p_joint 9.708333e-04

Joint ci ratio: 1.465278e-01	ci left: 9.076776e-04	ci right 1.052494e-03	k: 714	n:730000
Cons ci ratio: 1.555566e-02	ci left: 7.940595e-02	ci right 8.065218e-02	k: 58420	n:730000
KS ci ratio: 1.243754e-01	ci left: 1.274371e-03	ci right 1.444694e-03	k: 991	n:730000
CCDC76   730000 perm   371 sec   (1969 perm/sec)   p_kst 1.357534e-03   p_cons 8.002740e-02   p_joint 9.780822e-04

Joint ci ratio: 1.457150e-01	ci left: 9.058271e-04	ci right 1.049477e-03	k: 722	n:740000
Cons ci ratio: 1.545081e-02	ci left: 7.940440e-02	ci right 8.064214e-02	k: 59216	n:740000
KS ci ratio: 1.232007e-01	ci left: 1.282030e-03	ci right 1.451641e-03	k: 1010	n:740000
CCDC76   740000 perm   378 sec   (1955 perm/sec)   p_kst 1.364865e-03   p_cons 8.002162e-02   p_joint 9.756757e-04

Joint ci ratio: 1.488396e-01	ci left: 8.552216e-04	ci right 9.940130e-04	k: 692	n:750000
Cons ci ratio: 1.534332e-02	ci left: 7.944809e-02	ci right 8.067782e-02	k: 60046	n:750000
KS ci ratio: 1.222371e-01	ci left: 1.285615e-03	ci right 1.454274e-03	k: 1026	n:750000
CCDC76   750000 perm   386 sec   (1942 perm/sec)   p_kst 1.368000e-03   p_cons 8.006133e-02   p_joint 9.226667e-04

Joint ci ratio: 1.479880e-01	ci left: 8.541041e-04	ci right 9.918509e-04	k: 700	n:760000
Cons ci ratio: 1.523804e-02	ci left: 7.949067e-02	ci right 8.071254e-02	k: 60876	n:760000
KS ci ratio: 1.214123e-01	ci left: 1.286559e-03	ci right 1.454121e-03	k: 1040	n:760000
CCDC76   760000 perm   394 sec   (1927 perm/sec)   p_kst 1.368421e-03   p_cons 8.010000e-02   p_joint 9.210526e-04

Joint ci ratio: 1.492732e-01	ci left: 8.280061e-04	ci right 9.628072e-04	k: 688	n:770000
Cons ci ratio: 1.513997e-02	ci left: 7.948298e-02	ci right 8.069680e-02	k: 61668	n:770000
KS ci ratio: 1.206040e-01	ci left: 1.287482e-03	ci right 1.453968e-03	k: 1054	n:770000
CCDC76   770000 perm   402 sec   (1914 perm/sec)   p_kst 1.368831e-03   p_cons 8.008831e-02   p_joint 8.935065e-04

Joint ci ratio: 1.482015e-01	ci left: 8.297341e-04	ci right 9.637607e-04	k: 698	n:780000
Cons ci ratio: 1.503828e-02	ci left: 7.952918e-02	ci right 8.073548e-02	k: 62502	n:780000
KS ci ratio: 1.199804e-01	ci left: 1.284654e-03	ci right 1.449854e-03	k: 1065	n:780000
CCDC76   780000 perm   411 sec   (1898 perm/sec)   p_kst 1.365385e-03   p_cons 8.013077e-02   p_joint 8.948718e-04

Joint ci ratio: 1.466359e-01	ci left: 8.375184e-04	ci right 9.712481e-04	k: 713	n:790000
Cons ci ratio: 1.493861e-02	ci left: 7.957423e-02	ci right 8.077315e-02	k: 63336	n:790000
KS ci ratio: 1.193108e-01	ci left: 1.283128e-03	ci right 1.447146e-03	k: 1077	n:790000
CCDC76   790000 perm   420 sec   (1882 perm/sec)   p_kst 1.363291e-03   p_cons 8.017215e-02   p_joint 9.025316e-04

Joint ci ratio: 1.471533e-01	ci left: 8.210286e-04	ci right 9.526286e-04	k: 708	n:800000
Cons ci ratio: 1.483837e-02	ci left: 7.964310e-02	ci right 8.083494e-02	k: 64190	n:800000
KS ci ratio: 1.185979e-01	ci left: 1.282855e-03	ci right 1.445790e-03	k: 1090	n:800000
CCDC76   800000 perm   434 sec   (1845 perm/sec)   p_kst 1.362500e-03   p_cons 8.023750e-02   p_joint 8.850000e-04

Joint ci ratio: 1.465349e-01	ci left: 8.180276e-04	ci right 9.485472e-04	k: 714	n:810000
Cons ci ratio: 1.474852e-02	ci left: 7.962663e-02	ci right 8.081094e-02	k: 64976	n:810000
KS ci ratio: 1.177908e-01	ci left: 1.284988e-03	ci right 1.447006e-03	k: 1105	n:810000
CCDC76   810000 perm   442 sec   (1832 perm/sec)   p_kst 1.364198e-03   p_cons 8.021728e-02   p_joint 8.814815e-04

Joint ci ratio: 1.490609e-01	ci left: 7.798645e-04	ci right 9.066312e-04	k: 690	n:820000
Cons ci ratio: 1.465325e-02	ci left: 7.968108e-02	ci right 8.085848e-02	k: 65820	n:820000
KS ci ratio: 1.168436e-01	ci left: 1.290625e-03	ci right 1.451955e-03	k: 1123	n:820000
CCDC76   820000 perm   451 sec   (1819 perm/sec)   p_kst 1.369512e-03   p_cons 8.026829e-02   p_joint 8.414634e-04

Joint ci ratio: 1.488462e-01	ci left: 7.727881e-04	ci right 8.982076e-04	k: 692	n:830000
Cons ci ratio: 1.456752e-02	ci left: 7.965618e-02	ci right 8.082627e-02	k: 66599	n:830000
KS ci ratio: 1.161226e-01	ci left: 1.291452e-03	ci right 1.451820e-03	k: 1137	n:830000
CCDC76   830000 perm   460 sec   (1805 perm/sec)   p_kst 1.369880e-03   p_cons 8.023976e-02   p_joint 8.337349e-04

Joint ci ratio: 1.558705e-01	ci left: 6.937340e-04	ci right 8.121335e-04	k: 631	n:840000
Cons ci ratio: 1.448200e-02	ci left: 7.964495e-02	ci right 8.080795e-02	k: 67389	n:840000
KS ci ratio: 1.154650e-01	ci left: 1.291105e-03	ci right 1.450461e-03	k: 1150	n:840000
CCDC76   840000 perm   468 sec   (1793 perm/sec)   p_kst 1.369048e-03   p_cons 8.022500e-02   p_joint 7.511905e-04

Joint ci ratio: 1.545311e-01	ci left: 6.980111e-04	ci right 8.160222e-04	k: 642	n:850000
Cons ci ratio: 1.439832e-02	ci left: 7.963048e-02	ci right 8.078650e-02	k: 68176	n:850000
KS ci ratio: 1.146706e-01	ci left: 1.294197e-03	ci right 1.452761e-03	k: 1166	n:850000
CCDC76   850000 perm   477 sec   (1780 perm/sec)   p_kst 1.371765e-03   p_cons 8.020706e-02   p_joint 7.552941e-04

Joint ci ratio: 1.545318e-01	ci left: 6.898945e-04	ci right 8.065339e-04	k: 642	n:860000
Cons ci ratio: 1.431527e-02	ci left: 7.962449e-02	ci right 8.077369e-02	k: 68970	n:860000
KS ci ratio: 1.143287e-01	ci left: 1.287055e-03	ci right 1.444242e-03	k: 1173	n:860000
CCDC76   860000 perm   486 sec   (1770 perm/sec)   p_kst 1.363953e-03   p_cons 8.019767e-02   p_joint 7.465116e-04

Joint ci ratio: 1.571214e-01	ci left: 6.587671e-04	ci right 7.721861e-04	k: 621	n:870000
Cons ci ratio: 1.422855e-02	ci left: 7.967135e-02	ci right 8.081421e-02	k: 69810	n:870000
KS ci ratio: 1.138451e-01	ci left: 1.283427e-03	ci right 1.439463e-03	k: 1183	n:870000
CCDC76   870000 perm   495 sec   (1759 perm/sec)   p_kst 1.359770e-03   p_cons 8.024138e-02   p_joint 7.137931e-04

Joint ci ratio: 1.571220e-01	ci left: 6.512809e-04	ci right 7.634115e-04	k: 621	n:880000
Cons ci ratio: 1.414937e-02	ci left: 7.965487e-02	ci right 8.079108e-02	k: 70595	n:880000
KS ci ratio: 1.134151e-01	ci left: 1.278779e-03	ci right 1.433624e-03	k: 1192	n:880000
CCDC76   880000 perm   503 sec   (1748 perm/sec)   p_kst 1.354545e-03   p_cons 8.022159e-02   p_joint 7.056818e-04

Joint ci ratio: 1.557505e-01	ci left: 6.558390e-04	ci right 7.676767e-04	k: 632	n:890000
Cons ci ratio: 1.407225e-02	ci left: 7.963094e-02	ci right 8.076056e-02	k: 71373	n:890000
KS ci ratio: 1.122906e-01	ci left: 1.290616e-03	ci right 1.445242e-03	k: 1216	n:890000
CCDC76   890000 perm   512 sec   (1737 perm/sec)   p_kst 1.366292e-03   p_cons 8.019438e-02   p_joint 7.101124e-04

Joint ci ratio: 1.550177e-01	ci left: 6.549593e-04	ci right 7.660726e-04	k: 638	n:900000
Cons ci ratio: 1.399722e-02	ci left: 7.959869e-02	ci right 8.072179e-02	k: 72143	n:900000
KS ci ratio: 1.116502e-01	ci left: 1.291396e-03	ci right 1.445175e-03	k: 1230	n:900000
CCDC76   900000 perm   521 sec   (1727 perm/sec)   p_kst 1.366667e-03   p_cons 8.015889e-02   p_joint 7.088889e-04

Joint ci ratio: 1.541755e-01	ci left: 6.551567e-04	ci right 7.656439e-04	k: 645	n:910000
Cons ci ratio: 1.392224e-02	ci left: 7.957922e-02	ci right 8.069598e-02	k: 72924	n:910000
KS ci ratio: 1.107981e-01	ci left: 1.297503e-03	ci right 1.450754e-03	k: 1249	n:910000
CCDC76   910000 perm   530 sec   (1717 perm/sec)   p_kst 1.372527e-03   p_cons 8.013626e-02   p_joint 7.087912e-04

Joint ci ratio: 1.535825e-01	ci left: 6.532609e-04	ci right 7.629656e-04	k: 650	n:920000
Cons ci ratio: 1.384580e-02	ci left: 7.958836e-02	ci right 8.069907e-02	k: 73731	n:920000
KS ci ratio: 1.100521e-01	ci left: 1.301368e-03	ci right 1.453973e-03	k: 1266	n:920000
CCDC76   920000 perm   539 sec   (1706 perm/sec)   p_kst 1.376087e-03   p_cons 8.014239e-02   p_joint 7.065217e-04

Joint ci ratio: 1.283394e-01	ci left: 9.378246e-04	ci right 1.067466e-03	k: 931	n:930000
Cons ci ratio: 1.377230e-02	ci left: 7.957910e-02	ci right 8.068374e-02	k: 74521	n:930000
KS ci ratio: 1.093209e-01	ci left: 1.305153e-03	ci right 1.457119e-03	k: 1283	n:930000
CCDC76   930000 perm   548 sec   (1697 perm/sec)   p_kst 1.379570e-03   p_cons 8.013011e-02   p_joint 1.001075e-03

Joint ci ratio: 1.278604e-01	ci left: 9.350558e-04	ci right 1.063796e-03	k: 938	n:940000
Cons ci ratio: 1.369493e-02	ci left: 7.962413e-02	ci right 8.072314e-02	k: 75362	n:940000
KS ci ratio: 1.088979e-01	ci left: 1.301616e-03	ci right 1.452547e-03	k: 1293	n:940000
CCDC76   940000 perm   557 sec   (1687 perm/sec)   p_kst 1.375532e-03   p_cons 8.017234e-02   p_joint 9.978723e-04

Joint ci ratio: 1.045397e-01	ci left: 1.400619e-03	ci right 1.556130e-03	k: 1403	n:950000
Cons ci ratio: 1.362506e-02	ci left: 7.960108e-02	ci right 8.069412e-02	k: 76139	n:950000
KS ci ratio: 1.083135e-01	ci left: 1.302252e-03	ci right 1.452394e-03	k: 1307	n:950000
CCDC76   950000 perm   566 sec   (1677 perm/sec)   p_kst 1.375789e-03   p_cons 8.014632e-02   p_joint 1.476842e-03

Joint ci ratio: 1.069315e-01	ci left: 1.323151e-03	ci right 1.473633e-03	k: 1341	n:960000
Cons ci ratio: 1.355377e-02	ci left: 7.960552e-02	ci right 8.069285e-02	k: 76942	n:960000
KS ci ratio: 1.078611e-01	ci left: 1.299835e-03	ci right 1.449033e-03	k: 1318	n:960000
CCDC76   960000 perm   576 sec   (1666 perm/sec)   p_kst 1.372917e-03   p_cons 8.014792e-02   p_joint 1.396875e-03

Joint ci ratio: 1.072529e-01	ci left: 1.301483e-03	ci right 1.449974e-03	k: 1333	n:970000
Cons ci ratio: 1.348141e-02	ci left: 7.963352e-02	ci right 8.071538e-02	k: 77768	n:970000
KS ci ratio: 1.073739e-01	ci left: 1.298473e-03	ci right 1.446798e-03	k: 1330	n:970000
CCDC76   970000 perm   586 sec   (1656 perm/sec)   p_kst 1.371134e-03   p_cons 8.017320e-02   p_joint 1.374227e-03

Joint ci ratio: 1.068136e-01	ci left: 1.299126e-03	ci right 1.446703e-03	k: 1344	n:980000
Cons ci ratio: 1.340696e-02	ci left: 7.969657e-02	ci right 8.077326e-02	k: 78629	n:980000
KS ci ratio: 1.069331e-01	ci left: 1.296147e-03	ci right 1.443560e-03	k: 1341	n:980000
CCDC76   980000 perm   595 sec   (1646 perm/sec)   p_kst 1.368367e-03   p_cons 8.023367e-02   p_joint 1.371429e-03

Joint ci ratio: 1.061837e-01	ci left: 1.301735e-03	ci right 1.448682e-03	k: 1360	n:990000
Cons ci ratio: 1.333664e-02	ci left: 7.972613e-02	ci right 8.079754e-02	k: 79458	n:990000
KS ci ratio: 1.062620e-01	ci left: 1.299768e-03	ci right 1.446608e-03	k: 1358	n:990000
CCDC76   990000 perm   605 sec   (1637 perm/sec)   p_kst 1.371717e-03   p_cons 8.026061e-02   p_joint 1.373737e-03

Joint ci ratio: 1.057188e-01	ci left: 1.300400e-03	ci right 1.446513e-03	k: 1372	n:1000000
Cons ci ratio: 1.326940e-02	ci left: 7.973319e-02	ci right 8.079924e-02	k: 80265	n:1000000
KS ci ratio: 1.056418e-01	ci left: 1.302347e-03	ci right 1.448566e-03	k: 1374	n:1000000
CCDC76   1000000 perm   614 sec   (1627 perm/sec)   p_kst 1.374000e-03   p_cons 8.026500e-02   p_joint 1.372000e-03

Joint ci ratio: 1.050323e-01	ci left: 1.304877e-03	ci right 1.450482e-03	k: 1390	n:1010000
Cons ci ratio: 1.320254e-02	ci left: 7.974703e-02	ci right 8.080786e-02	k: 81079	n:1010000
KS ci ratio: 1.050702e-01	ci left: 1.303912e-03	ci right 1.449466e-03	k: 1389	n:1010000
CCDC76   1010000 perm   624 sec   (1618 perm/sec)   p_kst 1.375248e-03   p_cons 8.027624e-02   p_joint 1.376238e-03

Joint ci ratio: 1.044333e-01	ci left: 1.307359e-03	ci right 1.452359e-03	k: 1406	n:1020000
Cons ci ratio: 1.313895e-02	ci left: 7.973520e-02	ci right 8.079072e-02	k: 81867	n:1020000
KS ci ratio: 1.045823e-01	ci left: 1.303540e-03	ci right 1.448335e-03	k: 1402	n:1020000
CCDC76   1020000 perm   634 sec   (1609 perm/sec)   p_kst 1.374510e-03   p_cons 8.026176e-02   p_joint 1.378431e-03

Joint ci ratio: 1.036986e-01	ci left: 1.313579e-03	ci right 1.458181e-03	k: 1426	n:1030000
Cons ci ratio: 1.307524e-02	ci left: 7.973522e-02	ci right 8.078559e-02	k: 82667	n:1030000
KS ci ratio: 1.040644e-01	ci left: 1.304122e-03	ci right 1.448220e-03	k: 1416	n:1030000
CCDC76   1030000 perm   644 sec   (1600 perm/sec)   p_kst 1.374757e-03   p_cons 8.025922e-02   p_joint 1.384466e-03

Joint ci ratio: 1.030505e-01	ci left: 1.317808e-03	ci right 1.461915e-03	k: 1444	n:1040000
Cons ci ratio: 1.301313e-02	ci left: 7.972759e-02	ci right 8.077283e-02	k: 83459	n:1040000
KS ci ratio: 1.035903e-01	ci left: 1.303758e-03	ci right 1.447119e-03	k: 1429	n:1040000
CCDC76   1040000 perm   654 sec   (1591 perm/sec)   p_kst 1.374038e-03   p_cons 8.024904e-02   p_joint 1.388462e-03

Joint ci ratio: 1.026253e-01	ci left: 1.316392e-03	ci right 1.459714e-03	k: 1456	n:1050000
Cons ci ratio: 1.295013e-02	ci left: 7.974005e-02	ci right 8.078036e-02	k: 84272	n:1050000
KS ci ratio: 1.031585e-01	ci left: 1.302474e-03	ci right 1.445061e-03	k: 1441	n:1050000
CCDC76   1050000 perm   664 sec   (1581 perm/sec)   p_kst 1.372381e-03   p_cons 8.025905e-02   p_joint 1.386667e-03

Joint ci ratio: 1.023101e-01	ci left: 1.312247e-03	ci right 1.454651e-03	k: 1465	n:1060000
Cons ci ratio: 1.288953e-02	ci left: 7.973536e-02	ci right 8.077070e-02	k: 85067	n:1060000
KS ci ratio: 1.027320e-01	ci left: 1.301216e-03	ci right 1.443041e-03	k: 1453	n:1060000
CCDC76   1060000 perm   674 sec   (1573 perm/sec)   p_kst 1.370755e-03   p_cons 8.025189e-02   p_joint 1.382075e-03

Joint ci ratio: 1.024508e-01	ci left: 1.296339e-03	ci right 1.437223e-03	k: 1461	n:1070000
Cons ci ratio: 1.282985e-02	ci left: 7.972984e-02	ci right 8.076028e-02	k: 85861	n:1070000
KS ci ratio: 1.023107e-01	ci left: 1.299982e-03	ci right 1.441057e-03	k: 1465	n:1070000
CCDC76   1070000 perm   684 sec   (1564 perm/sec)   p_kst 1.369159e-03   p_cons 8.024393e-02   p_joint 1.365421e-03

Joint ci ratio: 1.019637e-01	ci left: 1.296968e-03	ci right 1.437210e-03	k: 1475	n:1080000
Cons ci ratio: 1.277251e-02	ci left: 7.970689e-02	ci right 8.073240e-02	k: 86636	n:1080000
KS ci ratio: 1.018946e-01	ci left: 1.298773e-03	ci right 1.439109e-03	k: 1477	n:1080000
CCDC76   1080000 perm   694 sec   (1555 perm/sec)   p_kst 1.367593e-03   p_cons 8.021852e-02   p_joint 1.365741e-03

Joint ci ratio: 1.022771e-01	ci left: 1.277022e-03	ci right 1.415557e-03	k: 1466	n:1090000
Cons ci ratio: 1.271017e-02	ci left: 7.975115e-02	ci right 8.077218e-02	k: 87484	n:1090000
KS ci ratio: 1.014495e-01	ci left: 1.298481e-03	ci right 1.438136e-03	k: 1490	n:1090000
CCDC76   1090000 perm   705 sec   (1547 perm/sec)   p_kst 1.366972e-03   p_cons 8.026055e-02   p_joint 1.344954e-03

Joint ci ratio: 1.019650e-01	ci left: 1.273386e-03	ci right 1.411080e-03	k: 1475	n:1100000
Cons ci ratio: 1.265480e-02	ci left: 7.972391e-02	ci right 8.074012e-02	k: 88254	n:1100000
KS ci ratio: 1.010774e-01	ci left: 1.296423e-03	ci right 1.435315e-03	k: 1501	n:1100000
CCDC76   1100000 perm   715 sec   (1538 perm/sec)   p_kst 1.364545e-03   p_cons 8.023091e-02   p_joint 1.340909e-03

Joint ci ratio: 1.015873e-01	ci left: 1.271572e-03	ci right 1.408529e-03	k: 1486	n:1110000
Cons ci ratio: 1.260139e-02	ci left: 7.968280e-02	ci right 8.069416e-02	k: 89008	n:1110000
KS ci ratio: 1.007428e-01	ci left: 1.293525e-03	ci right 1.431621e-03	k: 1511	n:1110000
CCDC76   1110000 perm   726 sec   (1529 perm/sec)   p_kst 1.361261e-03   p_cons 8.018739e-02   p_joint 1.338739e-03

Joint ci ratio: 1.010450e-01	ci left: 1.274142e-03	ci right 1.410601e-03	k: 1502	n:1120000
Cons ci ratio: 1.254371e-02	ci left: 7.970030e-02	ci right 8.070722e-02	k: 89827	n:1120000
KS ci ratio: 1.002796e-01	ci left: 1.294161e-03	ci right 1.431652e-03	k: 1525	n:1120000
CCDC76   1120000 perm   737 sec   (1520 perm/sec)   p_kst 1.361607e-03   p_cons 8.020268e-02   p_joint 1.341071e-03

Joint ci ratio: 1.006108e-01	ci left: 1.274081e-03	ci right 1.409912e-03	k: 1515	n:1130000
Cons ci ratio: 1.248831e-02	ci left: 7.969986e-02	ci right 8.070229e-02	k: 90626	n:1130000
KS ci ratio: 9.985519e-02	ci left: 1.293925e-03	ci right 1.430775e-03	k: 1538	n:1130000
CCDC76   1130000 perm   747 sec   (1512 perm/sec)   p_kst 1.361062e-03   p_cons 8.020000e-02   p_joint 1.340708e-03

Joint ci ratio: 1.000840e-01	ci left: 1.276588e-03	ci right 1.411931e-03	k: 1531	n:1140000
Cons ci ratio: 1.243637e-02	ci left: 7.966707e-02	ci right 8.066489e-02	k: 91388	n:1140000
KS ci ratio: 9.927612e-02	ci left: 1.297971e-03	ci right 1.434407e-03	k: 1556	n:1140000
CCDC76   1140000 perm   758 sec   (1504 perm/sec)   p_kst 1.364912e-03   p_cons 8.016491e-02   p_joint 1.342982e-03

Joint ci ratio: 9.953309e-02	ci left: 1.279900e-03	ci right 1.414805e-03	k: 1548	n:1150000
Cons ci ratio: 1.238435e-02	ci left: 7.964352e-02	ci right 8.063685e-02	k: 92160	n:1150000
KS ci ratio: 9.883276e-02	ci left: 1.298557e-03	ci right 1.434409e-03	k: 1570	n:1150000
CCDC76   1150000 perm   769 sec   (1496 perm/sec)   p_kst 1.365217e-03   p_cons 8.013913e-02   p_joint 1.346087e-03

Outputting figure to mutsig2_images.part000000000032/CCDC76.4_1490_1150000_0.0013652_0.080139_0.0013461.png
                gene_name: CCDC76
               theta_stop: 0.100 
                    nperm: 1150000 
                     p_ks: 0.0014 
        ci_ks_bounds_left: 0.0013 
       ci_ks_bounds_right: 0.0014 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.0013 
     ci_joint_bounds_left: 0.0013 
    ci_joint_bounds_right: 0.0014 

Current progress: 41 percent done.
CCIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.611926e-02	ci left: 8.483534e-01	ci right 8.622389e-01	k: 8554	n:10000
KS ci ratio: 7.485634e-03	ci left: 9.611050e-01	ci right 9.684210e-01	k: 9649	n:10000
CCIN   10000 perm   2 sec   (5999 perm/sec)   p_kst 9.649000e-01   p_cons 8.554000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCIN.4_1771_10000_0.9649_0.8554_1.png
                gene_name: CCIN
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
CCDC63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.506812e-02	ci left: 5.455956e-01	ci right 5.651722e-01	k: 5554	n:10000
Cons ci ratio: 4.362865e-02	ci left: 4.368230e-01	ci right 4.564081e-01	k: 4466	n:10000
KS ci ratio: 5.433722e-02	ci left: 3.328981e-01	ci right 3.515939e-01	k: 3422	n:10000
CCDC63   10000 perm   2 sec   (5884 perm/sec)   p_kst 3.422000e-01   p_cons 4.466000e-01   p_joint 5.554000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC63.3_1736_10000_0.3422_0.4466_0.5554.png
                gene_name: CCDC63
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 46 percent done.
CCDC66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.719059e-02	ci left: 3.985447e-01	ci right 4.179088e-01	k: 4082	n:10000
KS ci ratio: 1.720538e-02	ci left: 8.311391e-01	ci right 8.456632e-01	k: 8385	n:10000
CCDC66   10000 perm   2 sec   (5620 perm/sec)   p_kst 8.385000e-01   p_cons 4.082000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCDC66.3_2919_10000_0.8385_0.4082_1.png
                gene_name: CCDC66
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
CCDC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.143030e-02	ci left: 7.615226e-01	ci right 7.781199e-01	k: 7699	n:10000
KS ci ratio: 1.998574e-02	ci left: 7.856340e-01	ci right 8.015946e-01	k: 7937	n:10000
CCDC7   10000 perm   2 sec   (6145 perm/sec)   p_kst 7.937000e-01   p_cons 7.699000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCDC7.3_1529_10000_0.7937_0.7699_1.png
                gene_name: CCDC7
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
CCDC77
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.522827e-02	ci left: 1.671068e-01	ci right 1.820833e-01	k: 1745	n:10000
Cons ci ratio: 1.022656e-01	ci left: 1.215110e-01	ci right 1.347065e-01	k: 1280	n:10000
KS ci ratio: 5.600744e-02	ci left: 3.194942e-01	ci right 3.380056e-01	k: 3287	n:10000
CCDC77   10000 perm   2 sec   (6186 perm/sec)   p_kst 3.287000e-01   p_cons 1.280000e-01   p_joint 1.745000e-01

Joint ci ratio: 4.913658e-02	ci left: 2.354326e-01	ci right 2.473427e-01	k: 4827	n:20000
Cons ci ratio: 7.134306e-02	ci left: 1.264513e-01	ci right 1.358562e-01	k: 2622	n:20000
KS ci ratio: 3.959877e-02	ci left: 3.222896e-01	ci right 3.353602e-01	k: 6576	n:20000
CCDC77   20000 perm   4 sec   (5476 perm/sec)   p_kst 3.288000e-01   p_cons 1.311000e-01   p_joint 2.413500e-01

Outputting figure to mutsig2_images.part000000000032/CCDC77.3_1511_20000_0.3288_0.1311_0.24135.png
                gene_name: CCDC77
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 52 percent done.
CCDC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.118065e-02	ci left: 2.243482e-01	ci right 2.410078e-01	k: 2326	n:10000
Cons ci ratio: 7.417707e-02	ci left: 2.101378e-01	ci right 2.264266e-01	k: 2182	n:10000
KS ci ratio: 9.530083e-02	ci left: 1.377611e-01	ci right 1.516466e-01	k: 1446	n:10000
CCDC8   10000 perm   2 sec   (5921 perm/sec)   p_kst 1.446000e-01   p_cons 2.182000e-01   p_joint 2.326000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC8.3_1621_10000_0.1446_0.2182_0.2326.png
                gene_name: CCDC8
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 54 percent done.
CCDC91
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.104012e-02	ci left: 4.671685e-01	ci right 4.868449e-01	k: 4770	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CCDC91   10000 perm   2 sec   (6046 perm/sec)   p_kst 1   p_cons 4.770000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCDC91.3_1374_10000_1_0.477_1.png
                gene_name: CCDC91
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
CCDC92
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.359145e-02	ci left: 7.253233e-01	ci right 7.427402e-01	k: 7341	n:10000
Cons ci ratio: 4.033941e-02	ci left: 4.757596e-01	ci right 4.954488e-01	k: 4856	n:10000
KS ci ratio: 2.453543e-02	ci left: 7.095727e-01	ci right 7.272999e-01	k: 7185	n:10000
CCDC92   10000 perm   2 sec   (6239 perm/sec)   p_kst 7.185000e-01   p_cons 4.856000e-01   p_joint 7.341000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC92.3_1012_10000_0.7185_0.4856_0.7341.png
                gene_name: CCDC92
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 59 percent done.
CCL27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.027488e-02	ci left: 4.765590e-01	ci right 4.962490e-01	k: 4864	n:10000
Cons ci ratio: 1.595611e-02	ci left: 8.509025e-01	ci right 8.646883e-01	k: 8579	n:10000
KS ci ratio: 6.716099e-02	ci left: 2.454909e-01	ci right 2.626525e-01	k: 2540	n:10000
CCL27   10000 perm   1 sec   (6758 perm/sec)   p_kst 2.540000e-01   p_cons 8.579000e-01   p_joint 4.864000e-01

Outputting figure to mutsig2_images.part000000000032/CCL27.3_351_10000_0.254_0.8579_0.4864.png
                gene_name: CCL27
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 61 percent done.
CCM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.123146e-02	ci left: 2.817130e-01	ci right 2.996091e-01	k: 2906	n:10000
Cons ci ratio: 4.319882e-02	ci left: 4.417117e-01	ci right 4.613165e-01	k: 4515	n:10000
KS ci ratio: 7.771862e-02	ci left: 1.948582e-01	ci right 2.107153e-01	k: 2027	n:10000
CCM2   10000 perm   2 sec   (5867 perm/sec)   p_kst 2.027000e-01   p_cons 4.515000e-01   p_joint 2.906000e-01

Outputting figure to mutsig2_images.part000000000032/CCM2.3_1472_10000_0.2027_0.4515_0.2906.png
                gene_name: CCM2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 63 percent done.
CCNA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.077787e-02	ci left: 4.703648e-01	ci right 4.900467e-01	k: 4802	n:10000
Cons ci ratio: 8.954934e-02	ci left: 1.535515e-01	ci right 1.680467e-01	k: 1607	n:10000
KS ci ratio: 3.380079e-02	ci left: 5.637364e-01	ci right 5.832208e-01	k: 5735	n:10000
CCNA2   10000 perm   2 sec   (6154 perm/sec)   p_kst 5.735000e-01   p_cons 1.607000e-01   p_joint 4.802000e-01

Outputting figure to mutsig2_images.part000000000032/CCNA2.3_1331_10000_0.5735_0.1607_0.4802.png
                gene_name: CCNA2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 65 percent done.
CCNC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.128281e-01	ci left: 1.015915e-01	ci right 1.138381e-01	k: 1076	n:10000
Cons ci ratio: 1.584068e-01	ci left: 5.311294e-02	ci right 6.234681e-02	k: 576	n:10000
KS ci ratio: 8.301904e-02	ci left: 1.746777e-01	ci right 1.899078e-01	k: 1822	n:10000
CCNC   10000 perm   2 sec   (6348 perm/sec)   p_kst 1.822000e-01   p_cons 5.760000e-02   p_joint 1.076000e-01

Joint ci ratio: 7.677970e-02	ci left: 1.108556e-01	ci right 1.197565e-01	k: 2305	n:20000
Cons ci ratio: 1.131092e-01	ci left: 5.343714e-02	ci right 5.989251e-02	k: 1132	n:20000
KS ci ratio: 5.711964e-02	ci left: 1.851273e-01	ci right 1.960628e-01	k: 3811	n:20000
CCNC   20000 perm   4 sec   (5660 perm/sec)   p_kst 1.905500e-01   p_cons 5.660000e-02   p_joint 1.152500e-01

Joint ci ratio: 6.276255e-02	ci left: 1.114436e-01	ci right 1.186978e-01	k: 3451	n:30000
Cons ci ratio: 9.188209e-02	ci left: 5.456588e-02	ci right 5.985361e-02	k: 1715	n:30000
KS ci ratio: 4.599819e-02	ci left: 1.903975e-01	ci right 1.993950e-01	k: 5846	n:30000
CCNC   30000 perm   6 sec   (5394 perm/sec)   p_kst 1.948667e-01   p_cons 5.716667e-02   p_joint 1.150333e-01

Outputting figure to mutsig2_images.part000000000032/CCNC.3_900_30000_0.19487_0.057167_0.11503.png
                gene_name: CCNC
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 67 percent done.
CCNE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.633897e-02	ci left: 3.169137e-01	ci right 3.353876e-01	k: 3261	n:10000
Cons ci ratio: 9.602481e-04	ci left: 9.988336e-01	ci right 9.998376e-01	k: 9995	n:10000
KS ci ratio: 7.786312e-02	ci left: 1.942671e-01	ci right 2.101068e-01	k: 2021	n:10000
CCNE1   10000 perm   2 sec   (6029 perm/sec)   p_kst 2.021000e-01   p_cons 9.995000e-01   p_joint 3.261000e-01

Outputting figure to mutsig2_images.part000000000032/CCNE1.3_1277_10000_0.2021_0.9995_0.3261.png
                gene_name: CCNE1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 70 percent done.
CCNG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.667384e-02	ci left: 3.143335e-01	ci right 3.327693e-01	k: 3235	n:10000
Cons ci ratio: 1.069622e-01	ci left: 1.120319e-01	ci right 1.247914e-01	k: 1183	n:10000
KS ci ratio: 4.318138e-02	ci left: 4.419113e-01	ci right 4.615169e-01	k: 4517	n:10000
CCNG1   10000 perm   2 sec   (6167 perm/sec)   p_kst 4.517000e-01   p_cons 1.183000e-01   p_joint 3.235000e-01

Joint ci ratio: 3.939335e-02	ci left: 3.245777e-01	ci right 3.376714e-01	k: 6622	n:20000
Cons ci ratio: 7.514990e-02	ci left: 1.152317e-01	ci right 1.242791e-01	k: 2394	n:20000
KS ci ratio: 3.034911e-02	ci left: 4.478309e-01	ci right 4.616822e-01	k: 9095	n:20000
CCNG1   20000 perm   4 sec   (5544 perm/sec)   p_kst 4.547500e-01   p_cons 1.197000e-01   p_joint 3.311000e-01

Outputting figure to mutsig2_images.part000000000032/CCNG1.3_908_20000_0.45475_0.1197_0.3311.png
                gene_name: CCNG1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 72 percent done.
CCDC86
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.631413e-02	ci left: 8.452954e-01	ci right 8.592987e-01	k: 8524	n:10000
Cons ci ratio: 2.664240e-02	ci left: 6.747853e-01	ci right 6.931075e-01	k: 6840	n:10000
KS ci ratio: 3.642336e-02	ci left: 5.267670e-01	ci right 5.464117e-01	k: 5366	n:10000
CCDC86   10000 perm   2 sec   (6459 perm/sec)   p_kst 5.366000e-01   p_cons 6.840000e-01   p_joint 8.524000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC86.2_1099_10000_0.5366_0.684_0.8524.png
                gene_name: CCDC86
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 74 percent done.
CCDC90B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.539254e-02	ci left: 6.953478e-01	ci right 7.133330e-01	k: 7044	n:10000
Cons ci ratio: 3.602976e-02	ci left: 5.321738e-01	ci right 5.518018e-01	k: 5420	n:10000
KS ci ratio: 3.283636e-02	ci left: 5.778774e-01	ci right 5.972716e-01	k: 5876	n:10000
CCDC90B   10000 perm   1 sec   (6688 perm/sec)   p_kst 5.876000e-01   p_cons 5.420000e-01   p_joint 7.044000e-01

Outputting figure to mutsig2_images.part000000000032/CCDC90B.2_801_10000_0.5876_0.542_0.7044.png
                gene_name: CCDC90B
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 76 percent done.
CCDC97
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.973603e-02	ci left: 1.270870e-01	ci right 1.405271e-01	k: 1337	n:10000
Cons ci ratio: 3.123971e-01	ci left: 1.307848e-02	ci right 1.800961e-02	k: 154	n:10000
KS ci ratio: 2.930814e-02	ci left: 6.319101e-01	ci right 6.508075e-01	k: 6414	n:10000
CCDC97   10000 perm   2 sec   (6448 perm/sec)   p_kst 6.414000e-01   p_cons 1.540000e-02   p_joint 1.337000e-01

Joint ci ratio: 1.535677e-01	ci left: 2.912262e-02	ci right 3.401482e-02	k: 630	n:20000
Cons ci ratio: 2.326135e-01	ci left: 1.237052e-02	ci right 1.567300e-02	k: 279	n:20000
KS ci ratio: 2.065963e-02	ci left: 6.361639e-01	ci right 6.494945e-01	k: 12857	n:20000
CCDC97   20000 perm   3 sec   (5749 perm/sec)   p_kst 6.428500e-01   p_cons 1.395000e-02   p_joint 3.150000e-02

Joint ci ratio: 1.076428e-01	ci left: 4.005018e-02	ci right 4.463898e-02	k: 1269	n:30000
Cons ci ratio: 1.903900e-01	ci left: 1.260575e-02	ci right 1.528959e-02	k: 417	n:30000
KS ci ratio: 1.695027e-02	ci left: 6.351737e-01	ci right 6.460657e-01	k: 19219	n:30000
CCDC97   30000 perm   5 sec   (5467 perm/sec)   p_kst 6.406333e-01   p_cons 1.390000e-02   p_joint 4.230000e-02

Joint ci ratio: 1.209810e-01	ci left: 2.402572e-02	ci right 2.714367e-02	k: 1022	n:40000
Cons ci ratio: 1.618662e-01	ci left: 1.327937e-02	ci right 1.564189e-02	k: 577	n:40000
KS ci ratio: 1.465504e-02	ci left: 6.366775e-01	ci right 6.461020e-01	k: 25656	n:40000
CCDC97   40000 perm   8 sec   (5278 perm/sec)   p_kst 6.414000e-01   p_cons 1.442500e-02   p_joint 2.555000e-02

Joint ci ratio: 8.337337e-02	ci left: 4.057202e-02	ci right 4.412137e-02	k: 2116	n:50000
Cons ci ratio: 1.446256e-01	ci left: 1.343189e-02	ci right 1.554503e-02	k: 723	n:50000
KS ci ratio: 1.309824e-02	ci left: 6.375190e-01	ci right 6.459445e-01	k: 32087	n:50000
CCDC97   50000 perm   10 sec   (5091 perm/sec)   p_kst 6.417400e-01   p_cons 1.446000e-02   p_joint 4.232000e-02

Joint ci ratio: 7.305955e-02	ci left: 4.410819e-02	ci right 4.746925e-02	k: 2746	n:60000
Cons ci ratio: 1.317787e-01	ci left: 1.357483e-02	ci right 1.550588e-02	k: 871	n:60000
KS ci ratio: 1.195548e-02	ci left: 6.379484e-01	ci right 6.456379e-01	k: 38508	n:60000
CCDC97   60000 perm   12 sec   (4939 perm/sec)   p_kst 6.418000e-01   p_cons 1.451667e-02   p_joint 4.576667e-02

Joint ci ratio: 4.135441e-02	ci left: 1.113997e-01	ci right 1.161180e-01	k: 7962	n:70000
Cons ci ratio: 1.219022e-01	ci left: 1.366905e-02	ci right 1.545724e-02	k: 1018	n:70000
KS ci ratio: 1.109927e-02	ci left: 6.369610e-01	ci right 6.440845e-01	k: 44837	n:70000
CCDC97   70000 perm   15 sec   (4809 perm/sec)   p_kst 6.405286e-01   p_cons 1.454286e-02   p_joint 1.137429e-01

Joint ci ratio: 4.707490e-02	ci left: 7.788177e-02	ci right 8.164878e-02	k: 6380	n:80000
Cons ci ratio: 9.451325e-02	ci left: 2.005420e-02	ci right 2.205575e-02	k: 1683	n:80000
KS ci ratio: 1.037237e-02	ci left: 6.376395e-01	ci right 6.443003e-01	k: 51278	n:80000
CCDC97   80000 perm   17 sec   (4698 perm/sec)   p_kst 6.409750e-01   p_cons 2.103750e-02   p_joint 7.975000e-02

Outputting figure to mutsig2_images.part000000000032/CCDC97.2_1052_80000_0.64097_0.021038_0.07975.png
                gene_name: CCDC97
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.082 

Current progress: 78 percent done.
CCKAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.716202e-02	ci left: 5.167575e-01	ci right 5.364270e-01	k: 5266	n:10000
KS ci ratio: 3.515339e-02	ci left: 5.443933e-01	ci right 5.639751e-01	k: 5542	n:10000
CCKAR   10000 perm   2 sec   (6271 perm/sec)   p_kst 5.542000e-01   p_cons 5.266000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000032/CCKAR.2_1307_10000_0.5542_0.5266_1.png
                gene_name: CCKAR
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
CCL18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.855357e-02	ci left: 8.092795e-01	ci right 8.245354e-01	k: 8170	n:10000
Cons ci ratio: 2.643313e-02	ci left: 6.782109e-01	ci right 6.964798e-01	k: 6874	n:10000
KS ci ratio: 5.921521e-02	ci left: 2.955875e-01	ci right 3.137265e-01	k: 3046	n:10000
CCL18   10000 perm   1 sec   (6985 perm/sec)   p_kst 3.046000e-01   p_cons 6.874000e-01   p_joint 8.170000e-01

Outputting figure to mutsig2_images.part000000000032/CCL18.2_282_10000_0.3046_0.6874_0.817.png
                gene_name: CCL18
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 83 percent done.
CCL23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.804305e-02	ci left: 8.176118e-01	ci right 8.325984e-01	k: 8252	n:10000
Cons ci ratio: 1.952111e-02	ci left: 7.933421e-01	ci right 8.090821e-01	k: 8013	n:10000
KS ci ratio: 2.919359e-02	ci left: 6.337201e-01	ci right 6.525965e-01	k: 6432	n:10000
CCL23   10000 perm   2 sec   (6619 perm/sec)   p_kst 6.432000e-01   p_cons 8.013000e-01   p_joint 8.252000e-01

Outputting figure to mutsig2_images.part000000000032/CCL23.2_430_10000_0.6432_0.8013_0.8252.png
                gene_name: CCL23
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 85 percent done.
CCNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.810253e-03	ci left: 9.579609e-01	ci right 9.655670e-01	k: 9619	n:10000
Cons ci ratio: 1.523591e-02	ci left: 8.620253e-01	ci right 8.753591e-01	k: 8688	n:10000
KS ci ratio: 7.340334e-02	ci left: 2.136891e-01	ci right 2.300732e-01	k: 2218	n:10000
CCNB1   10000 perm   2 sec   (6306 perm/sec)   p_kst 2.218000e-01   p_cons 8.688000e-01   p_joint 9.619000e-01

Outputting figure to mutsig2_images.part000000000032/CCNB1.2_1338_10000_0.2218_0.8688_0.9619.png
                gene_name: CCNB1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 87 percent done.
CCNB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.282789e-01	ci left: 7.989663e-02	ci right 9.094628e-02	k: 853	n:10000
Cons ci ratio: 7.921578e-02	ci left: 1.888498e-01	ci right 2.045273e-01	k: 1966	n:10000
KS ci ratio: 2.689486e-01	ci left: 1.799971e-02	ci right 2.368423e-02	k: 207	n:10000
CCNB2   10000 perm   1 sec   (6677 perm/sec)   p_kst 2.070000e-02   p_cons 1.966000e-01   p_joint 8.530000e-02

Joint ci ratio: 1.618303e-01	ci left: 2.618962e-02	ci right 3.084880e-02	k: 569	n:20000
Cons ci ratio: 5.286234e-02	ci left: 2.099173e-01	ci right 2.213655e-01	k: 4312	n:20000
KS ci ratio: 1.906485e-01	ci left: 1.872403e-02	ci right 2.271702e-02	k: 413	n:20000
CCNB2   20000 perm   3 sec   (5845 perm/sec)   p_kst 2.065000e-02   p_cons 2.156000e-01   p_joint 2.845000e-02

Joint ci ratio: 8.039167e-02	ci left: 7.047366e-02	ci right 7.640926e-02	k: 2202	n:30000
Cons ci ratio: 4.332220e-02	ci left: 2.097340e-01	ci right 2.190547e-01	k: 6431	n:30000
KS ci ratio: 1.532874e-01	ci left: 1.969600e-02	ci right 2.299760e-02	k: 639	n:30000
CCNB2   30000 perm   5 sec   (5561 perm/sec)   p_kst 2.130000e-02   p_cons 2.143667e-01   p_joint 7.340000e-02

Joint ci ratio: 9.696979e-02	ci left: 3.734358e-02	ci right 4.117368e-02	k: 1569	n:40000
Cons ci ratio: 3.750985e-02	ci left: 2.104361e-01	ci right 2.185054e-01	k: 8578	n:40000
KS ci ratio: 1.326984e-01	ci left: 1.993160e-02	ci right 2.278848e-02	k: 853	n:40000
CCNB2   40000 perm   8 sec   (5216 perm/sec)   p_kst 2.132500e-02   p_cons 2.144500e-01   p_joint 3.922500e-02

Joint ci ratio: 7.479069e-02	ci left: 5.012887e-02	ci right 5.404334e-02	k: 2603	n:50000
Cons ci ratio: 3.353344e-02	ci left: 2.110280e-01	ci right 2.182452e-01	k: 10731	n:50000
KS ci ratio: 1.175412e-01	ci left: 2.047956e-02	ci right 2.305638e-02	k: 1087	n:50000
CCNB2   50000 perm   10 sec   (5098 perm/sec)   p_kst 2.174000e-02   p_cons 2.146200e-01   p_joint 5.206000e-02

Joint ci ratio: 6.849198e-02	ci left: 4.999087e-02	ci right 5.355264e-02	k: 3105	n:60000
Cons ci ratio: 3.058663e-02	ci left: 2.116189e-01	ci right 2.182087e-01	k: 12894	n:60000
KS ci ratio: 1.074939e-01	ci left: 2.051655e-02	ci right 2.286337e-02	k: 1300	n:60000
CCNB2   60000 perm   12 sec   (5005 perm/sec)   p_kst 2.166667e-02   p_cons 2.149000e-01   p_joint 5.175000e-02

Joint ci ratio: 6.110412e-02	ci left: 5.382931e-02	ci right 5.723622e-02	k: 3886	n:70000
Cons ci ratio: 2.828800e-02	ci left: 2.122172e-01	ci right 2.183207e-01	k: 15068	n:70000
KS ci ratio: 9.954803e-02	ci left: 2.059155e-02	ci right 2.276264e-02	k: 1516	n:70000
CCNB2   70000 perm   14 sec   (4880 perm/sec)   p_kst 2.165714e-02   p_cons 2.152571e-01   p_joint 5.551429e-02

Outputting figure to mutsig2_images.part000000000032/CCNB2.2_1233_70000_0.021657_0.21526_0.055514.png
                gene_name: CCNB2
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.057 

Current progress: 89 percent done.
CCNDBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.034147e-02	ci left: 9.299902e-01	ci right 9.397546e-01	k: 9350	n:10000
Cons ci ratio: 7.391724e-02	ci left: 2.113215e-01	ci right 2.276422e-01	k: 2194	n:10000
KS ci ratio: 4.999771e-02	ci left: 3.710696e-01	ci right 3.902000e-01	k: 3806	n:10000
CCNDBP1   10000 perm   1 sec   (6694 perm/sec)   p_kst 3.806000e-01   p_cons 2.194000e-01   p_joint 9.350000e-01

Outputting figure to mutsig2_images.part000000000032/CCNDBP1.2_1127_10000_0.3806_0.2194_0.935.png
                gene_name: CCNDBP1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 91 percent done.
CCNE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.662879e-02	ci left: 4.043224e-01	ci right 4.237277e-01	k: 4140	n:10000
Cons ci ratio: 7.525856e-02	ci left: 2.053056e-01	ci right 2.214617e-01	k: 2133	n:10000
KS ci ratio: 2.664240e-02	ci left: 6.747853e-01	ci right 6.931075e-01	k: 6840	n:10000
CCNE2   10000 perm   2 sec   (6598 perm/sec)   p_kst 6.840000e-01   p_cons 2.133000e-01   p_joint 4.140000e-01

Outputting figure to mutsig2_images.part000000000032/CCNE2.2_1259_10000_0.684_0.2133_0.414.png
                gene_name: CCNE2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 93 percent done.
CCNF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.752127e-02	ci left: 5.119543e-01	ci right 5.316330e-01	k: 5218	n:10000
Cons ci ratio: 5.078065e-02	ci left: 3.638081e-01	ci right 3.828658e-01	k: 3733	n:10000
KS ci ratio: 2.748407e-02	ci left: 6.610882e-01	ci right 6.796124e-01	k: 6704	n:10000
CCNF   10000 perm   2 sec   (5820 perm/sec)   p_kst 6.704000e-01   p_cons 3.733000e-01   p_joint 5.218000e-01

Outputting figure to mutsig2_images.part000000000032/CCNF.2_2429_10000_0.6704_0.3733_0.5218.png
                gene_name: CCNF
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 96 percent done.
CCNH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.483886e-02	ci left: 7.045272e-01	ci right 7.223483e-01	k: 7135	n:10000
Cons ci ratio: 1.590375e-02	ci left: 8.517184e-01	ci right 8.654720e-01	k: 8587	n:10000
KS ci ratio: 7.023701e-02	ci left: 2.290880e-01	ci right 2.458652e-01	k: 2374	n:10000
CCNH   10000 perm   2 sec   (6580 perm/sec)   p_kst 2.374000e-01   p_cons 8.587000e-01   p_joint 7.135000e-01

Outputting figure to mutsig2_images.part000000000032/CCNH.2_1008_10000_0.2374_0.8587_0.7135.png
                gene_name: CCNH
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 98 percent done.
CCNI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.962739e-02	ci left: 6.268832e-01	ci right 6.458373e-01	k: 6364	n:10000
Cons ci ratio: 3.251899e-02	ci left: 5.825929e-01	ci right 6.019533e-01	k: 5923	n:10000
KS ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
CCNI   10000 perm   1 sec   (6709 perm/sec)   p_kst 3.885000e-01   p_cons 5.923000e-01   p_joint 6.364000e-01

Outputting figure to mutsig2_images.part000000000032/CCNI.2_1158_10000_0.3885_0.5923_0.6364.png
                gene_name: CCNI
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000032
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 32 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1559>
Subject: Job 9893875: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1559>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000033> was used as the working directory.
Started at Sat Oct  6 00:01:56 2012
Results reported at Sat Oct  6 00:13:48 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000033.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000033.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 33  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000033.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    761.53 sec.
    Max Memory :      3602 MB
    Max Swap   :      5916 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
33
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 33
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 33: processing genes 2886 - 2975
Calculating significance of each gene.
Using projection method.
2886	CCNI2	1
2887	CCNJ	1
2888	CCNJL	8.501308e-01
2889	CCNK	1
2890	CCNL1	7.388316e-01
2891	CCNL2	1.635172e-01
2892	CCNO	1
2893	CCNT1	6.398921e-01
2894	CCNT2	2.069761e-01
2895	CCNY	5.637772e-01
2896	CCNYL1	5.432681e-01
2897	CCPG1	6.753866e-02
2898	CCR1	4.704854e-02
2899	CCR10	1
2900	CCR2	1
2901	CCR3	3.089732e-02
2902	CCR4	7.410431e-01
2903	CCR5	2.712895e-01
2904	CCR6	8.510443e-01
2905	CCR7	3.899707e-01
2906	CCR8	7.448799e-02
2907	CCR9	9.159211e-02
2908	CCRL1	2.230939e-02
2909	CCRL2	1
2910	CCRN4L	6.457470e-01
2911	CCS	7.589936e-01
2912	CCT2	9.165173e-01
2913	CCT3	9.151846e-01
2914	CCT4	5.337251e-01
2915	CCT5	4.223674e-01
2916	CCT6A	2.799501e-01
2917	CCT6B	5.036422e-01
2918	CCT7	1
2919	CCT8	7.036218e-01
2920	CCT8L2	1.829132e-02
2921	CD101	7.261021e-01
2922	CD109	9.318696e-02
2923	CD14	8.610404e-01
In gene CD151 the following bins exceed PROBCAP:
    COAD-AA-A01Z	categ 6	N = 790     n = 1	mu =   3.62e-07
2924	CD151	3.724333e-01
2925	CD160	3.239297e-01
2926	CD163	3.204792e-02
2927	CD163L1	1.732935e-01
2928	CD164	1
2929	CD164L2	4.122904e-01
2930	CD177	4.063160e-01
2931	CD180	3.353744e-03
2932	CD19	6.900397e-01
2933	CD1A	1.232217e-01
2934	CD1B	5.225122e-01
2935	CD1C	4.647186e-01
2936	CD1D	7.464787e-01
2937	CD1E	6.435494e-04
2938	CD2	3.097629e-01
2939	CD200	5.206945e-01
2940	CD200R1	1.351156e-01
In gene CD200R1L the following bins exceed PROBCAP:
    READ-AF-2692	categ 6	N = 840     n = 1	mu =   1.72e-07
2941	CD200R1L	4.087482e-02
2942	CD207	5.918592e-01
2943	CD209	2.719979e-01
2944	CD22	5.832575e-02
2945	CD226	1.001871e-01
2946	CD244	3.780670e-01
2947	CD247	2.569529e-01
2948	CD248	9.360806e-01
2949	CD27	1.684237e-01
2950	CD274	3.724565e-02
2951	CD276	1
2952	CD28	3.141369e-01
2953	CD2AP	8.888401e-02
2954	CD2BP2	4.974041e-02
2955	CD300A	3.981764e-01
2956	CD300C	9.239444e-03
2957	CD300E	2.473587e-01
2958	CD300LB	5.612577e-01
2959	CD300LD	6.110173e-01
2960	CD300LF	6.859986e-01
2961	CD300LG	6.894180e-01
2962	CD302	1
2963	CD320	6.871669e-01
2964	CD33	3.610967e-01
2965	CD34	7.263836e-01
2966	CD36	6.270174e-01
2967	CD37	4.330139e-01
2968	CD38	4.199331e-01
2969	CD3D	4.605657e-01
2970	CD3E	1
2971	CD3EAP	7.236310e-01
2972	CD3G	1.761587e-01
2973	CD4	6.845244e-01
2974	CD40	7.803041e-01
2975	CD40LG	1.044332e-02
Done

Running MutSig 2:
Scatter job 33: processing genes 2886 - 2975
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CD109
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.918723e-02	ci left: 6.338206e-01	ci right 6.526959e-01	k: 6433	n:10000
Cons ci ratio: 7.492393e-02	ci left: 2.067847e-01	ci right 2.229817e-01	k: 2148	n:10000
KS ci ratio: 1.536256e-02	ci left: 8.600854e-01	ci right 8.735001e-01	k: 8669	n:10000
CD109   10000 perm   4 sec   (2310 perm/sec)   p_kst 8.669000e-01   p_cons 2.148000e-01   p_joint 6.433000e-01

Outputting figure to mutsig2_images.part000000000033/CD109.13_4470_10000_0.8669_0.2148_0.6433.png
                gene_name: CD109
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 2 percent done.
CD163
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.763965e-02	ci left: 6.585713e-01	ci right 6.771308e-01	k: 6679	n:10000
Cons ci ratio: 2.109147e-02	ci left: 7.671924e-01	ci right 7.836469e-01	k: 7755	n:10000
KS ci ratio: 3.895970e-02	ci left: 4.931507e-01	ci right 5.128476e-01	k: 5030	n:10000
CD163   10000 perm   2 sec   (4359 perm/sec)   p_kst 5.030000e-01   p_cons 7.755000e-01   p_joint 6.679000e-01

Outputting figure to mutsig2_images.part000000000033/CD163.13_3535_10000_0.503_0.7755_0.6679.png
                gene_name: CD163
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 4 percent done.
CD163L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.051746e-02	ci left: 1.838286e-01	ci right 1.993515e-01	k: 1915	n:10000
Cons ci ratio: 4.656160e-02	ci left: 4.050199e-01	ci right 4.244298e-01	k: 4147	n:10000
KS ci ratio: 1.014049e-01	ci left: 1.233692e-01	ci right 1.366472e-01	k: 1299	n:10000
CD163L1   10000 perm   4 sec   (2750 perm/sec)   p_kst 1.299000e-01   p_cons 4.147000e-01   p_joint 1.915000e-01

Joint ci ratio: 5.456815e-02	ci left: 1.994728e-01	ci right 2.107131e-01	k: 4101	n:20000
Cons ci ratio: 3.254016e-02	ci left: 4.135957e-01	ci right 4.273274e-01	k: 8409	n:20000
KS ci ratio: 7.226545e-02	ci left: 1.235960e-01	ci right 1.329123e-01	k: 2564	n:20000
CD163L1   20000 perm   8 sec   (2559 perm/sec)   p_kst 1.282000e-01   p_cons 4.204500e-01   p_joint 2.050500e-01

Outputting figure to mutsig2_images.part000000000033/CD163L1.10_4438_20000_0.1282_0.42045_0.20505.png
                gene_name: CD163L1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 6 percent done.
CD180
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.504455e-02	ci left: 3.271384e-01	ci right 3.457570e-01	k: 3364	n:10000
Cons ci ratio: 3.636482e-02	ci left: 5.275679e-01	ci right 5.472103e-01	k: 5374	n:10000
KS ci ratio: 8.197598e-02	ci left: 1.784159e-01	ci right 1.937674e-01	k: 1860	n:10000
CD180   10000 perm   2 sec   (4842 perm/sec)   p_kst 1.860000e-01   p_cons 5.374000e-01   p_joint 3.364000e-01

Outputting figure to mutsig2_images.part000000000033/CD180.10_1998_10000_0.186_0.5374_0.3364.png
                gene_name: CD180
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 7 percent done.
CD22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.066559e-01	ci left: 1.126178e-01	ci right 1.254051e-01	k: 1189	n:10000
Cons ci ratio: 6.245627e-02	ci left: 2.736903e-01	ci right 2.914365e-01	k: 2825	n:10000
KS ci ratio: 1.486677e-01	ci left: 6.014890e-02	ci right 6.990637e-02	k: 649	n:10000
CD22   10000 perm   2 sec   (4933 perm/sec)   p_kst 6.490000e-02   p_cons 2.825000e-01   p_joint 1.189000e-01

Joint ci ratio: 7.306820e-02	ci left: 1.211844e-01	ci right 1.304247e-01	k: 2515	n:20000
Cons ci ratio: 4.438782e-02	ci left: 2.742812e-01	ci right 2.867827e-01	k: 5610	n:20000
KS ci ratio: 1.039341e-01	ci left: 6.293881e-02	ci right 6.988790e-02	k: 1327	n:20000
CD22   20000 perm   5 sec   (4328 perm/sec)   p_kst 6.635000e-02   p_cons 2.805000e-01   p_joint 1.257500e-01

Joint ci ratio: 5.244268e-02	ci left: 1.528670e-01	ci right 1.611329e-01	k: 4709	n:30000
Cons ci ratio: 3.561401e-02	ci left: 2.825152e-01	ci right 2.927926e-01	k: 8629	n:30000
KS ci ratio: 8.518353e-02	ci left: 6.311792e-02	ci right 6.876649e-02	k: 1977	n:30000
CD22   30000 perm   7 sec   (4128 perm/sec)   p_kst 6.590000e-02   p_cons 2.876333e-01   p_joint 1.569667e-01

Outputting figure to mutsig2_images.part000000000033/CD22.10_2596_30000_0.0659_0.28763_0.15697.png
                gene_name: CD22
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 9 percent done.
CD101
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.255073e-02	ci left: 1.450154e-01	ci right 1.591879e-01	k: 1520	n:10000
Cons ci ratio: 1.922651e-02	ci left: 7.982126e-01	ci right 8.138088e-01	k: 8061	n:10000
KS ci ratio: 1.592875e-01	ci left: 5.253552e-02	ci right 6.172460e-02	k: 570	n:10000
CD101   10000 perm   2 sec   (4009 perm/sec)   p_kst 5.700000e-02   p_cons 8.061000e-01   p_joint 1.520000e-01

Joint ci ratio: 6.365241e-02	ci left: 1.543023e-01	ci right 1.644969e-01	k: 3187	n:20000
Cons ci ratio: 1.413185e-02	ci left: 7.880245e-01	ci right 7.992900e-01	k: 15874	n:20000
KS ci ratio: 1.113489e-01	ci left: 5.509208e-02	ci right 6.163705e-02	k: 1166	n:20000
CD101   20000 perm   6 sec   (3591 perm/sec)   p_kst 5.830000e-02   p_cons 7.937000e-01   p_joint 1.593500e-01

Joint ci ratio: 5.968743e-02	ci left: 1.219355e-01	ci right 1.294705e-01	k: 3770	n:30000
Cons ci ratio: 1.156672e-02	ci left: 7.882696e-01	ci right 7.974736e-01	k: 23787	n:30000
KS ci ratio: 9.286185e-02	ci left: 5.345727e-02	ci right 5.869579e-02	k: 1681	n:30000
CD101   30000 perm   8 sec   (3575 perm/sec)   p_kst 5.603333e-02   p_cons 7.929000e-01   p_joint 1.256667e-01

Outputting figure to mutsig2_images.part000000000033/CD101.9_3102_30000_0.056033_0.7929_0.12567.png
                gene_name: CD101
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 11 percent done.
CD200R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.503941e-02	ci left: 7.011979e-01	ci right 7.190795e-01	k: 7102	n:10000
Cons ci ratio: 5.639027e-02	ci left: 3.165168e-01	ci right 3.349849e-01	k: 3257	n:10000
KS ci ratio: 2.100668e-02	ci left: 7.686102e-01	ci right 7.850283e-01	k: 7769	n:10000
CD200R1   10000 perm   2 sec   (5633 perm/sec)   p_kst 7.769000e-01   p_cons 3.257000e-01   p_joint 7.102000e-01

Outputting figure to mutsig2_images.part000000000033/CD200R1.7_1126_10000_0.7769_0.3257_0.7102.png
                gene_name: CD200R1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 13 percent done.
CD2AP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.287355e-02	ci left: 3.452172e-01	ci right 3.640676e-01	k: 3546	n:10000
Cons ci ratio: 7.422056e-02	ci left: 2.099406e-01	ci right 2.262240e-01	k: 2180	n:10000
KS ci ratio: 4.970216e-02	ci left: 3.738555e-01	ci right 3.930125e-01	k: 3834	n:10000
CD2AP   10000 perm   2 sec   (5171 perm/sec)   p_kst 3.834000e-01   p_cons 2.180000e-01   p_joint 3.546000e-01

Outputting figure to mutsig2_images.part000000000033/CD2AP.7_1992_10000_0.3834_0.218_0.3546.png
                gene_name: CD2AP
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 15 percent done.
CCNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.118453e-02	ci left: 3.601284e-01	ci right 3.791476e-01	k: 3696	n:10000
Cons ci ratio: 2.888903e-02	ci left: 6.385473e-01	ci right 6.573664e-01	k: 6480	n:10000
KS ci ratio: 6.010744e-02	ci left: 2.893427e-01	ci right 3.073749e-01	k: 2983	n:10000
CCNT2   10000 perm   2 sec   (4362 perm/sec)   p_kst 2.983000e-01   p_cons 6.480000e-01   p_joint 3.696000e-01

Outputting figure to mutsig2_images.part000000000033/CCNT2.6_2229_10000_0.2983_0.648_0.3696.png
                gene_name: CCNT2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 17 percent done.
CCPG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.699685e-01	ci left: 4.619368e-02	ci right 5.487054e-02	k: 504	n:10000
Cons ci ratio: 4.310919e-01	ci left: 6.437624e-03	ci right 1.005764e-02	k: 81	n:10000
KS ci ratio: 6.197770e-03	ci left: 9.724899e-01	ci right 9.786288e-01	k: 9757	n:10000
CCPG1   10000 perm   2 sec   (4256 perm/sec)   p_kst 9.757000e-01   p_cons 8.100000e-03   p_joint 5.040000e-02

Joint ci ratio: 1.179902e-01	ci left: 4.920621e-02	ci right 5.542476e-02	k: 1045	n:20000
Cons ci ratio: 3.481110e-01	ci left: 5.205045e-03	ci right 7.442133e-03	k: 125	n:20000
KS ci ratio: 4.483275e-03	ci left: 9.722722e-01	ci right 9.766884e-01	k: 19491	n:20000
CCPG1   20000 perm   5 sec   (4080 perm/sec)   p_kst 9.745500e-01   p_cons 6.250000e-03   p_joint 5.225000e-02

Joint ci ratio: 1.478326e-01	ci left: 2.120485e-02	ci right 2.462174e-02	k: 686	n:30000
Cons ci ratio: 2.921143e-01	ci left: 5.095739e-03	ci right 6.868654e-03	k: 178	n:30000
KS ci ratio: 3.721659e-03	ci left: 9.718260e-01	ci right 9.754815e-01	k: 29211	n:30000
CCPG1   30000 perm   8 sec   (3916 perm/sec)   p_kst 9.737000e-01   p_cons 5.933333e-03   p_joint 2.286667e-02

Joint ci ratio: 1.446650e-01	ci left: 1.671968e-02	ci right 1.935095e-02	k: 720	n:40000
Cons ci ratio: 2.522715e-01	ci left: 5.243302e-03	ci right 6.779744e-03	k: 239	n:40000
KS ci ratio: 3.286465e-03	ci left: 9.710301e-01	ci right 9.742508e-01	k: 38907	n:40000
CCPG1   40000 perm   10 sec   (3825 perm/sec)   p_kst 9.726750e-01   p_cons 5.975000e-03   p_joint 1.800000e-02

Joint ci ratio: 1.029108e-01	ci left: 2.674691e-02	ci right 2.966821e-02	k: 1409	n:50000
Cons ci ratio: 2.365983e-01	ci left: 4.814119e-03	ci right 6.124304e-03	k: 272	n:50000
KS ci ratio: 2.943406e-03	ci left: 9.711314e-01	ci right 9.740134e-01	k: 48630	n:50000
CCPG1   50000 perm   13 sec   (3750 perm/sec)   p_kst 9.726000e-01   p_cons 5.440000e-03   p_joint 2.818000e-02

Joint ci ratio: 8.154777e-02	ci left: 3.556907e-02	ci right 3.860925e-02	k: 2224	n:60000
Cons ci ratio: 2.138933e-01	ci left: 4.971242e-03	ci right 6.177340e-03	k: 333	n:60000
KS ci ratio: 2.696027e-03	ci left: 9.710748e-01	ci right 9.737126e-01	k: 58345	n:60000
CCPG1   60000 perm   16 sec   (3695 perm/sec)   p_kst 9.724167e-01   p_cons 5.550000e-03   p_joint 3.706667e-02

Joint ci ratio: 8.100420e-02	ci left: 3.105860e-02	ci right 3.369464e-02	k: 2265	n:70000
Cons ci ratio: 2.027003e-01	ci left: 4.775570e-03	ci right 5.866054e-03	k: 371	n:70000
KS ci ratio: 2.496051e-03	ci left: 9.711741e-01	ci right 9.736151e-01	k: 68069	n:70000
CCPG1   70000 perm   20 sec   (3584 perm/sec)   p_kst 9.724143e-01   p_cons 5.300000e-03   p_joint 3.235714e-02

Joint ci ratio: 8.763538e-02	ci left: 2.332965e-02	ci right 2.548003e-02	k: 1951	n:80000
Cons ci ratio: 1.874368e-01	ci left: 4.927749e-03	ci right 5.958616e-03	k: 434	n:80000
KS ci ratio: 2.342454e-03	ci left: 9.710755e-01	ci right 9.733651e-01	k: 77779	n:80000
CCPG1   80000 perm   23 sec   (3545 perm/sec)   p_kst 9.722375e-01   p_cons 5.425000e-03   p_joint 2.438750e-02

Joint ci ratio: 8.669617e-02	ci left: 2.124731e-02	ci right 2.318366e-02	k: 1998	n:90000
Cons ci ratio: 1.769673e-01	ci left: 4.942271e-03	ci right 5.912248e-03	k: 487	n:90000
KS ci ratio: 2.209970e-03	ci left: 9.711050e-01	ci right 9.732644e-01	k: 87498	n:90000
CCPG1   90000 perm   26 sec   (3503 perm/sec)   p_kst 9.722000e-01   p_cons 5.411111e-03   p_joint 2.220000e-02

Joint ci ratio: 7.388204e-02	ci left: 2.636747e-02	ci right 2.840006e-02	k: 2737	n:100000
Cons ci ratio: 1.683899e-01	ci left: 4.936009e-03	ci right 5.853038e-03	k: 538	n:100000
KS ci ratio: 2.101947e-03	ci left: 9.710198e-01	ci right 9.730727e-01	k: 97206	n:100000
CCPG1   100000 perm   29 sec   (3458 perm/sec)   p_kst 9.720600e-01   p_cons 5.380000e-03   p_joint 2.737000e-02

Joint ci ratio: 7.609822e-02	ci left: 2.265744e-02	ci right 2.445871e-02	k: 2590	n:110000
Cons ci ratio: 1.605399e-01	ci left: 4.957997e-03	ci right 5.832029e-03	k: 592	n:110000
KS ci ratio: 1.999937e-03	ci left: 9.711837e-01	ci right 9.731368e-01	k: 106939	n:110000
CCPG1   110000 perm   32 sec   (3415 perm/sec)   p_kst 9.721727e-01   p_cons 5.381818e-03   p_joint 2.354545e-02

Joint ci ratio: 7.698331e-02	ci left: 2.033516e-02	ci right 2.197143e-02	k: 2537	n:120000
Cons ci ratio: 1.535752e-01	ci left: 4.985161e-03	ci right 5.822348e-03	k: 647	n:120000
KS ci ratio: 1.927038e-03	ci left: 9.708731e-01	ci right 9.727540e-01	k: 116619	n:120000
CCPG1   120000 perm   36 sec   (3371 perm/sec)   p_kst 9.718250e-01   p_cons 5.391667e-03   p_joint 2.114167e-02

Joint ci ratio: 7.770561e-02	ci left: 1.845338e-02	ci right 1.995279e-02	k: 2495	n:130000
Cons ci ratio: 1.487264e-01	ci left: 4.919935e-03	ci right 5.717760e-03	k: 690	n:130000
KS ci ratio: 1.853044e-03	ci left: 9.708622e-01	ci right 9.726705e-01	k: 126331	n:130000
CCPG1   130000 perm   39 sec   (3328 perm/sec)   p_kst 9.717769e-01   p_cons 5.307692e-03   p_joint 1.919231e-02

Joint ci ratio: 7.345679e-02	ci left: 1.920289e-02	ci right 2.067423e-02	k: 2790	n:140000
Cons ci ratio: 1.433313e-01	ci left: 4.933255e-03	ci right 5.701738e-03	k: 743	n:140000
KS ci ratio: 1.783243e-03	ci left: 9.709702e-01	ci right 9.727102e-01	k: 136059	n:140000
CCPG1   140000 perm   43 sec   (3287 perm/sec)   p_kst 9.718500e-01   p_cons 5.307143e-03   p_joint 1.992857e-02

Joint ci ratio: 7.316013e-02	ci left: 1.809247e-02	ci right 1.947289e-02	k: 2816	n:150000
Cons ci ratio: 1.377902e-01	ci left: 4.996751e-03	ci right 5.742564e-03	k: 804	n:150000
KS ci ratio: 1.715510e-03	ci left: 9.712338e-01	ci right 9.729079e-01	k: 145812	n:150000
CCPG1   150000 perm   46 sec   (3242 perm/sec)   p_kst 9.720800e-01   p_cons 5.360000e-03   p_joint 1.877333e-02

Joint ci ratio: 7.199073e-02	ci left: 1.753835e-02	ci right 1.885420e-02	k: 2910	n:160000
Cons ci ratio: 1.331552e-01	ci left: 5.028637e-03	ci right 5.751963e-03	k: 861	n:160000
KS ci ratio: 1.666523e-03	ci left: 9.710785e-01	ci right 9.727043e-01	k: 155504	n:160000
CCPG1   160000 perm   50 sec   (3200 perm/sec)   p_kst 9.719000e-01   p_cons 5.381250e-03   p_joint 1.818750e-02

Joint ci ratio: 6.757269e-02	ci left: 1.875540e-02	ci right 2.007282e-02	k: 3299	n:170000
Cons ci ratio: 1.288176e-01	ci left: 5.068529e-03	ci right 5.772029e-03	k: 920	n:170000
KS ci ratio: 1.616581e-03	ci left: 9.711094e-01	ci right 9.726863e-01	k: 165224	n:170000
CCPG1   170000 perm   54 sec   (3158 perm/sec)   p_kst 9.719059e-01   p_cons 5.411765e-03   p_joint 1.940588e-02

Joint ci ratio: 6.501830e-02	ci left: 1.915045e-02	ci right 2.044286e-02	k: 3562	n:180000
Cons ci ratio: 1.239907e-01	ci left: 5.179697e-03	ci right 5.869709e-03	k: 993	n:180000
KS ci ratio: 1.569757e-03	ci left: 9.711768e-01	ci right 9.727080e-01	k: 174951	n:180000
CCPG1   180000 perm   58 sec   (3115 perm/sec)   p_kst 9.719500e-01   p_cons 5.516667e-03   p_joint 1.978889e-02

Joint ci ratio: 6.025609e-02	ci left: 2.113250e-02	ci right 2.245057e-02	k: 4139	n:190000
Cons ci ratio: 1.196685e-01	ci left: 5.279601e-03	ci right 5.956670e-03	k: 1066	n:190000
KS ci ratio: 1.529430e-03	ci left: 9.711417e-01	ci right 9.726333e-01	k: 184660	n:190000
CCPG1   190000 perm   62 sec   (3075 perm/sec)   p_kst 9.718947e-01   p_cons 5.610526e-03   p_joint 2.178421e-02

Joint ci ratio: 5.638037e-02	ci left: 2.293420e-02	ci right 2.426965e-02	k: 4719	n:200000
Cons ci ratio: 1.166989e-01	ci left: 5.282492e-03	ci right 5.941962e-03	k: 1121	n:200000
KS ci ratio: 1.488780e-03	ci left: 9.712322e-01	ci right 9.726841e-01	k: 194393	n:200000
CCPG1   200000 perm   66 sec   (3022 perm/sec)   p_kst 9.719650e-01   p_cons 5.605000e-03   p_joint 2.359500e-02

Joint ci ratio: 5.516428e-02	ci left: 2.283281e-02	ci right 2.413277e-02	k: 4930	n:210000
Cons ci ratio: 1.140375e-01	ci left: 5.276042e-03	ci right 5.918673e-03	k: 1174	n:210000
KS ci ratio: 1.452469e-03	ci left: 9.712662e-01	ci right 9.726826e-01	k: 204116	n:210000
CCPG1   210000 perm   70 sec   (2979 perm/sec)   p_kst 9.719810e-01   p_cons 5.590476e-03   p_joint 2.347619e-02

Joint ci ratio: 5.528049e-02	ci left: 2.172737e-02	ci right 2.296707e-02	k: 4915	n:220000
Cons ci ratio: 1.113225e-01	ci left: 5.292430e-03	ci right 5.920704e-03	k: 1232	n:220000
KS ci ratio: 1.419876e-03	ci left: 9.712515e-01	ci right 9.726360e-01	k: 213829	n:220000
CCPG1   220000 perm   75 sec   (2939 perm/sec)   p_kst 9.719500e-01   p_cons 5.600000e-03   p_joint 2.234091e-02

Joint ci ratio: 5.541171e-02	ci left: 2.070522e-02	ci right 2.188949e-02	k: 4897	n:230000
Cons ci ratio: 1.086236e-01	ci left: 5.324480e-03	ci right 5.940253e-03	k: 1294	n:230000
KS ci ratio: 1.386945e-03	ci left: 9.713352e-01	ci right 9.726876e-01	k: 223564	n:230000
CCPG1   230000 perm   80 sec   (2892 perm/sec)   p_kst 9.720174e-01   p_cons 5.626087e-03   p_joint 2.129130e-02

Joint ci ratio: 4.487348e-02	ci left: 3.012472e-02	ci right 3.151164e-02	k: 7395	n:240000
Cons ci ratio: 9.724520e-02	ci left: 6.397837e-03	ci right 7.055827e-03	k: 1613	n:240000
KS ci ratio: 1.355155e-03	ci left: 9.714544e-01	ci right 9.727758e-01	k: 233309	n:240000
CCPG1   240000 perm   85 sec   (2824 perm/sec)   p_kst 9.721208e-01   p_cons 6.720833e-03   p_joint 3.081250e-02

Outputting figure to mutsig2_images.part000000000033/CCPG1.6_2302_240000_0.97212_0.0067208_0.030812.png
                gene_name: CCPG1
               theta_stop: 0.097 
                    nperm: 240000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.0067 
      ci_cons_bounds_left: 0.0064 
     ci_cons_bounds_right: 0.0071 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 19 percent done.
CCR9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.528930e-02	ci left: 8.612085e-01	ci right 8.745764e-01	k: 8680	n:10000
Cons ci ratio: 2.767703e-02	ci left: 6.579673e-01	ci right 6.765351e-01	k: 6673	n:10000
KS ci ratio: 2.747163e-02	ci left: 6.612896e-01	ci right 6.798110e-01	k: 6706	n:10000
CCR9   10000 perm   2 sec   (5992 perm/sec)   p_kst 6.706000e-01   p_cons 6.673000e-01   p_joint 8.680000e-01

Outputting figure to mutsig2_images.part000000000033/CCR9.6_1118_10000_0.6706_0.6673_0.868.png
                gene_name: CCR9
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 20 percent done.
CCT8L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.526261e-02	ci left: 8.616169e-01	ci right 8.749678e-01	k: 8684	n:10000
Cons ci ratio: 4.684082e-02	ci left: 4.021307e-01	ci right 4.215207e-01	k: 4118	n:10000
KS ci ratio: 1.839835e-02	ci left: 8.118192e-01	ci right 8.269942e-01	k: 8195	n:10000
CCT8L2   10000 perm   2 sec   (5361 perm/sec)   p_kst 8.195000e-01   p_cons 4.118000e-01   p_joint 8.684000e-01

Outputting figure to mutsig2_images.part000000000033/CCT8L2.6_1678_10000_0.8195_0.4118_0.8684.png
                gene_name: CCT8L2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 22 percent done.
CD1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.346137e-02	ci left: 4.387185e-01	ci right 4.583115e-01	k: 4485	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CD1E   10000 perm   2 sec   (5373 perm/sec)   p_kst 1   p_cons 4.485000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD1E.6_1191_10000_1_0.4485_1.png
                gene_name: CD1E
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
CD40LG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.248217e-02	ci left: 4.499948e-01	ci right 4.696286e-01	k: 4598	n:10000
Cons ci ratio: 1.118988e-01	ci left: 1.031515e-01	ci right 1.154771e-01	k: 1092	n:10000
KS ci ratio: 9.724413e-03	ci left: 9.373421e-01	ci right 9.465983e-01	k: 9421	n:10000
CD40LG   10000 perm   2 sec   (4734 perm/sec)   p_kst 9.421000e-01   p_cons 1.092000e-01   p_joint 4.598000e-01

Joint ci ratio: 3.245685e-02	ci left: 4.148428e-01	ci right 4.285800e-01	k: 8434	n:20000
Cons ci ratio: 7.649875e-02	ci left: 1.115930e-01	ci right 1.205189e-01	k: 2320	n:20000
KS ci ratio: 6.810751e-03	ci left: 9.397996e-01	ci right 9.462709e-01	k: 18862	n:20000
CD40LG   20000 perm   5 sec   (4192 perm/sec)   p_kst 9.431000e-01   p_cons 1.160000e-01   p_joint 4.217000e-01

Outputting figure to mutsig2_images.part000000000033/CD40LG.6_806_20000_0.9431_0.116_0.4217.png
                gene_name: CD40LG
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 26 percent done.
CCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.025873e-01	ci left: 1.208265e-01	ci right 1.339914e-01	k: 1273	n:10000
Cons ci ratio: 7.909067e-02	ci left: 1.893422e-01	ci right 2.050346e-01	k: 1971	n:10000
KS ci ratio: 1.058997e-01	ci left: 1.140829e-01	ci right 1.269391e-01	k: 1204	n:10000
CCR1   10000 perm   2 sec   (5798 perm/sec)   p_kst 1.204000e-01   p_cons 1.971000e-01   p_joint 1.273000e-01

Joint ci ratio: 6.007885e-02	ci left: 1.702012e-01	ci right 1.807934e-01	k: 3509	n:20000
Cons ci ratio: 5.462679e-02	ci left: 1.991264e-01	ci right 2.103596e-01	k: 4094	n:20000
KS ci ratio: 7.444539e-02	ci left: 1.171992e-01	ci right 1.263111e-01	k: 2434	n:20000
CCR1   20000 perm   4 sec   (5172 perm/sec)   p_kst 1.217000e-01   p_cons 2.047000e-01   p_joint 1.754500e-01

Outputting figure to mutsig2_images.part000000000033/CCR1.5_1072_20000_0.1217_0.2047_0.17545.png
                gene_name: CCR1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 28 percent done.
CCRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.478410e-02	ci left: 2.592386e-01	ci right 2.766968e-01	k: 2679	n:10000
Cons ci ratio: 7.166236e-02	ci left: 2.219788e-01	ci right 2.385786e-01	k: 2302	n:10000
KS ci ratio: 6.483366e-02	ci left: 2.589418e-01	ci right 2.763938e-01	k: 2676	n:10000
CCRL1   10000 perm   2 sec   (4451 perm/sec)   p_kst 2.676000e-01   p_cons 2.302000e-01   p_joint 2.679000e-01

Outputting figure to mutsig2_images.part000000000033/CCRL1.5_1057_10000_0.2676_0.2302_0.2679.png
                gene_name: CCRL1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 30 percent done.
CCR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.487681e-02	ci left: 4.229601e-01	ci right 4.424791e-01	k: 4327	n:10000
Cons ci ratio: 4.274819e-02	ci left: 4.469008e-01	ci right 4.665244e-01	k: 4567	n:10000
KS ci ratio: 6.592598e-02	ci left: 2.525117e-01	ci right 2.698276e-01	k: 2611	n:10000
CCR3   10000 perm   2 sec   (5090 perm/sec)   p_kst 2.611000e-01   p_cons 4.567000e-01   p_joint 4.327000e-01

Outputting figure to mutsig2_images.part000000000033/CCR3.4_1139_10000_0.2611_0.4567_0.4327.png
                gene_name: CCR3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 31 percent done.
CCR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.120495e-02	ci left: 4.651709e-01	ci right 4.848436e-01	k: 4750	n:10000
Cons ci ratio: 2.835287e-02	ci left: 6.470981e-01	ci right 6.658107e-01	k: 6565	n:10000
KS ci ratio: 5.364460e-02	ci left: 3.386594e-01	ci right 3.574292e-01	k: 3480	n:10000
CCR8   10000 perm   2 sec   (4664 perm/sec)   p_kst 3.480000e-01   p_cons 6.565000e-01   p_joint 4.750000e-01

Outputting figure to mutsig2_images.part000000000033/CCR8.4_1072_10000_0.348_0.6565_0.475.png
                gene_name: CCR8
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 33 percent done.
CCT6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.878092e-02	ci left: 4.954504e-01	ci right 5.151465e-01	k: 5053	n:10000
Cons ci ratio: 8.230215e-02	ci left: 1.772353e-01	ci right 1.925487e-01	k: 1848	n:10000
KS ci ratio: 2.518543e-02	ci left: 6.987770e-01	ci right 7.167018e-01	k: 7078	n:10000
CCT6A   10000 perm   2 sec   (4740 perm/sec)   p_kst 7.078000e-01   p_cons 1.848000e-01   p_joint 5.053000e-01

Outputting figure to mutsig2_images.part000000000033/CCT6A.4_1652_10000_0.7078_0.1848_0.5053.png
                gene_name: CCT6A
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 35 percent done.
CD226
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
Cons ci ratio: 4.382332e-02	ci left: 4.346283e-01	ci right 4.542041e-01	k: 4444	n:10000
KS ci ratio: 1.296954e-01	ci left: 7.824692e-02	ci right 8.919702e-02	k: 836	n:10000
CD226   10000 perm   2 sec   (5426 perm/sec)   p_kst 8.360000e-02   p_cons 4.444000e-01   p_joint 1.802000e-01

Joint ci ratio: 5.115703e-02	ci left: 2.211105e-01	ci right 2.327690e-01	k: 4538	n:20000
Cons ci ratio: 3.077798e-02	ci left: 4.408914e-01	ci right 4.547238e-01	k: 8956	n:20000
KS ci ratio: 9.274202e-02	ci left: 7.818459e-02	ci right 8.583745e-02	k: 1639	n:20000
CD226   20000 perm   4 sec   (4652 perm/sec)   p_kst 8.195000e-02   p_cons 4.478000e-01   p_joint 2.269000e-01

Outputting figure to mutsig2_images.part000000000033/CD226.4_1035_20000_0.08195_0.4478_0.2269.png
                gene_name: CD226
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 37 percent done.
CD274
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.537425e-02	ci left: 6.956504e-01	ci right 7.136303e-01	k: 7047	n:10000
Cons ci ratio: 3.308081e-02	ci left: 5.742662e-01	ci right 5.936849e-01	k: 5840	n:10000
KS ci ratio: 3.187005e-02	ci left: 5.923277e-01	ci right 6.116129e-01	k: 6020	n:10000
CD274   10000 perm   2 sec   (5676 perm/sec)   p_kst 6.020000e-01   p_cons 5.840000e-01   p_joint 7.047000e-01

Outputting figure to mutsig2_images.part000000000033/CD274.4_897_10000_0.602_0.584_0.7047.png
                gene_name: CD274
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 39 percent done.
CD2BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.859457e-02	ci left: 1.913119e-01	ci right 2.070637e-01	k: 1991	n:10000
Cons ci ratio: 5.143806e-02	ci left: 3.578414e-01	ci right 3.768359e-01	k: 3673	n:10000
KS ci ratio: 1.298648e-01	ci left: 7.805288e-02	ci right 8.899118e-02	k: 834	n:10000
CD2BP2   10000 perm   2 sec   (5706 perm/sec)   p_kst 8.340000e-02   p_cons 3.673000e-01   p_joint 1.991000e-01

Joint ci ratio: 6.655758e-02	ci left: 1.428586e-01	ci right 1.527441e-01	k: 2955	n:20000
Cons ci ratio: 3.620443e-02	ci left: 3.628050e-01	ci right 3.762329e-01	k: 7390	n:20000
KS ci ratio: 9.447857e-02	ci left: 7.549372e-02	ci right 8.302914e-02	k: 1584	n:20000
CD2BP2   20000 perm   4 sec   (5108 perm/sec)   p_kst 7.920000e-02   p_cons 3.695000e-01   p_joint 1.477500e-01

Outputting figure to mutsig2_images.part000000000033/CD2BP2.4_1050_20000_0.0792_0.3695_0.14775.png
                gene_name: CD2BP2
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 41 percent done.
CCNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.165621e-01	ci left: 9.564778e-02	ci right 1.075854e-01	k: 1015	n:10000
Cons ci ratio: 4.131249e-02	ci left: 4.638726e-01	ci right 4.835427e-01	k: 4737	n:10000
KS ci ratio: 1.515559e-01	ci left: 5.793006e-02	ci right 6.752661e-02	k: 626	n:10000
CCNT1   10000 perm   2 sec   (5604 perm/sec)   p_kst 6.260000e-02   p_cons 4.737000e-01   p_joint 1.015000e-01

Joint ci ratio: 1.032282e-01	ci left: 6.376824e-02	ci right 7.075821e-02	k: 1344	n:20000
Cons ci ratio: 2.897557e-02	ci left: 4.708560e-01	ci right 4.847505e-01	k: 9556	n:20000
KS ci ratio: 1.077657e-01	ci left: 5.869667e-02	ci right 6.543134e-02	k: 1240	n:20000
CCNT1   20000 perm   4 sec   (4886 perm/sec)   p_kst 6.200000e-02   p_cons 4.778000e-01   p_joint 6.720000e-02

Joint ci ratio: 7.202327e-02	ci left: 8.662081e-02	ci right 9.312554e-02	k: 2695	n:30000
Cons ci ratio: 2.360699e-02	ci left: 4.732327e-01	ci right 4.845714e-01	k: 14367	n:30000
KS ci ratio: 8.846056e-02	ci left: 5.870939e-02	ci right 6.417592e-02	k: 1842	n:30000
CCNT1   30000 perm   6 sec   (4617 perm/sec)   p_kst 6.140000e-02   p_cons 4.789000e-01   p_joint 8.983333e-02

Outputting figure to mutsig2_images.part000000000033/CCNT1.3_2217_30000_0.0614_0.4789_0.089833.png
                gene_name: CCNT1
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.093 

Current progress: 43 percent done.
CCR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.122148e-02	ci left: 4.649712e-01	ci right 4.846435e-01	k: 4748	n:10000
Cons ci ratio: 2.377273e-02	ci left: 7.222933e-01	ci right 7.397719e-01	k: 7311	n:10000
KS ci ratio: 6.299974e-02	ci left: 2.702248e-01	ci right 2.879041e-01	k: 2790	n:10000
CCR7   10000 perm   2 sec   (6258 perm/sec)   p_kst 2.790000e-01   p_cons 7.311000e-01   p_joint 4.748000e-01

Outputting figure to mutsig2_images.part000000000033/CCR7.3_1149_10000_0.279_0.7311_0.4748.png
                gene_name: CCR7
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 44 percent done.
CCT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.318649e-02	ci left: 1.740876e-01	ci right 1.892983e-01	k: 1816	n:10000
KS ci ratio: 2.556333e-02	ci left: 6.925243e-01	ci right 7.105582e-01	k: 7016	n:10000
CCT5   10000 perm   2 sec   (4975 perm/sec)   p_kst 7.016000e-01   p_cons 1.816000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CCT5.3_1670_10000_0.7016_0.1816_1.png
                gene_name: CCT5
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
CCT6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.025127e-02	ci left: 6.171342e-01	ci right 6.361919e-01	k: 6267	n:10000
Cons ci ratio: 7.217141e-02	ci left: 2.195112e-01	ci right 2.360477e-01	k: 2277	n:10000
KS ci ratio: 1.878267e-02	ci left: 8.055218e-01	ci right 8.208953e-01	k: 8133	n:10000
CCT6B   10000 perm   2 sec   (5809 perm/sec)   p_kst 8.133000e-01   p_cons 2.277000e-01   p_joint 6.267000e-01

Outputting figure to mutsig2_images.part000000000033/CCT6B.3_1649_10000_0.8133_0.2277_0.6267.png
                gene_name: CCT6B
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 48 percent done.
CD19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.200320e-02	ci left: 5.903202e-01	ci right 6.096215e-01	k: 6000	n:10000
Cons ci ratio: 6.103901e-02	ci left: 2.830009e-01	ci right 3.009204e-01	k: 2919	n:10000
KS ci ratio: 5.350728e-03	ci left: 9.789852e-01	ci right 9.843289e-01	k: 9818	n:10000
CD19   10000 perm   2 sec   (5056 perm/sec)   p_kst 9.818000e-01   p_cons 2.919000e-01   p_joint 6.000000e-01

Outputting figure to mutsig2_images.part000000000033/CD19.3_1730_10000_0.9818_0.2919_0.6.png
                gene_name: CD19
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 50 percent done.
CD1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.152669e-02	ci left: 3.570460e-01	ci right 3.760318e-01	k: 3665	n:10000
KS ci ratio: 4.584535e-03	ci left: 9.841492e-01	ci right 9.887610e-01	k: 9866	n:10000
CD1A   10000 perm   2 sec   (6308 perm/sec)   p_kst 9.866000e-01   p_cons 3.665000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD1A.3_1008_10000_0.9866_0.3665_1.png
                gene_name: CD1A
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
CD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.638588e-03	ci left: 9.596369e-01	ci right 9.670900e-01	k: 9635	n:10000
Cons ci ratio: 6.753509e-02	ci left: 2.434149e-01	ci right 2.605298e-01	k: 2519	n:10000
KS ci ratio: 3.853352e-02	ci left: 4.986503e-01	ci right 5.183447e-01	k: 5085	n:10000
CD2   10000 perm   2 sec   (4896 perm/sec)   p_kst 5.085000e-01   p_cons 2.519000e-01   p_joint 9.635000e-01

Outputting figure to mutsig2_images.part000000000033/CD2.3_1076_10000_0.5085_0.2519_0.9635.png
                gene_name: CD2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 54 percent done.
CD200R1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.178078e-02	ci left: 7.556526e-01	ci right 7.723934e-01	k: 7641	n:10000
Cons ci ratio: 2.542912e-02	ci left: 6.947428e-01	ci right 7.127384e-01	k: 7038	n:10000
KS ci ratio: 2.942928e-02	ci left: 6.299998e-01	ci right 6.489189e-01	k: 6395	n:10000
CD200R1L   10000 perm   2 sec   (5771 perm/sec)   p_kst 6.395000e-01   p_cons 7.038000e-01   p_joint 7.641000e-01

Outputting figure to mutsig2_images.part000000000033/CD200R1L.3_840_10000_0.6395_0.7038_0.7641.png
                gene_name: CD200R1L
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 56 percent done.
CD209
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.255174e-02	ci left: 3.479998e-01	ci right 3.668833e-01	k: 3574	n:10000
KS ci ratio: 2.782048e-02	ci left: 6.556521e-01	ci right 6.742517e-01	k: 6650	n:10000
CD209   10000 perm   2 sec   (5580 perm/sec)   p_kst 6.650000e-01   p_cons 3.574000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD209.3_1243_10000_0.665_0.3574_1.png
                gene_name: CD209
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
CD244
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.166236e-02	ci left: 2.219788e-01	ci right 2.385786e-01	k: 2302	n:10000
Cons ci ratio: 5.110775e-02	ci left: 3.608245e-01	ci right 3.798511e-01	k: 3703	n:10000
KS ci ratio: 1.068087e-01	ci left: 1.123248e-01	ci right 1.250982e-01	k: 1186	n:10000
CD244   10000 perm   2 sec   (5810 perm/sec)   p_kst 1.186000e-01   p_cons 3.703000e-01   p_joint 2.302000e-01

Joint ci ratio: 6.062423e-02	ci left: 1.676325e-01	ci right 1.781628e-01	k: 3457	n:20000
Cons ci ratio: 3.778244e-02	ci left: 3.432375e-01	ci right 3.565061e-01	k: 6997	n:20000
KS ci ratio: 7.491910e-02	ci left: 1.158711e-01	ci right 1.249396e-01	k: 2407	n:20000
CD244   20000 perm   4 sec   (5071 perm/sec)   p_kst 1.203500e-01   p_cons 3.498500e-01   p_joint 1.728500e-01

Outputting figure to mutsig2_images.part000000000033/CD244.3_1149_20000_0.12035_0.34985_0.17285.png
                gene_name: CD244
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 59 percent done.
CD27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.180519e-02	ci left: 3.545604e-01	ci right 3.735189e-01	k: 3640	n:10000
Cons ci ratio: 5.798077e-02	ci left: 3.045120e-01	ci right 3.227967e-01	k: 3136	n:10000
KS ci ratio: 5.541639e-02	ci left: 3.241598e-01	ci right 3.427373e-01	k: 3334	n:10000
CD27   10000 perm   2 sec   (5867 perm/sec)   p_kst 3.334000e-01   p_cons 3.136000e-01   p_joint 3.640000e-01

Outputting figure to mutsig2_images.part000000000033/CD27.3_807_10000_0.3334_0.3136_0.364.png
                gene_name: CD27
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 61 percent done.
CD300A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.732758e-02	ci left: 3.971502e-01	ci right 4.165041e-01	k: 4068	n:10000
KS ci ratio: 1.045149e-02	ci left: 9.286459e-01	ci right 9.384997e-01	k: 9337	n:10000
CD300A   10000 perm   1 sec   (6864 perm/sec)   p_kst 9.337000e-01   p_cons 4.068000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD300A.3_928_10000_0.9337_0.4068_1.png
                gene_name: CD300A
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
CD300C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.032688e-02	ci left: 7.799572e-01	ci right 7.960747e-01	k: 7881	n:10000
Cons ci ratio: 1.421704e-02	ci left: 8.773570e-01	ci right 8.900186e-01	k: 8838	n:10000
KS ci ratio: 3.522458e-02	ci left: 5.433915e-01	ci right 5.629775e-01	k: 5532	n:10000
CD300C   10000 perm   2 sec   (5660 perm/sec)   p_kst 5.532000e-01   p_cons 8.838000e-01   p_joint 7.881000e-01

Outputting figure to mutsig2_images.part000000000033/CD300C.3_691_10000_0.5532_0.8838_0.7881.png
                gene_name: CD300C
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 65 percent done.
CCNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.350465e-02	ci left: 5.680480e-01	ci right 5.875066e-01	k: 5778	n:10000
Cons ci ratio: 4.671537e-02	ci left: 4.034258e-01	ci right 4.228248e-01	k: 4131	n:10000
KS ci ratio: 6.540060e-02	ci left: 2.555781e-01	ci right 2.729595e-01	k: 2642	n:10000
CCNL1   10000 perm   2 sec   (5980 perm/sec)   p_kst 2.642000e-01   p_cons 4.131000e-01   p_joint 5.778000e-01

Outputting figure to mutsig2_images.part000000000033/CCNL1.2_1625_10000_0.2642_0.4131_0.5778.png
                gene_name: CCNL1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 67 percent done.
CCNL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.144619e-02	ci left: 9.160549e-01	ci right 9.266981e-01	k: 9215	n:10000
KS ci ratio: 1.205944e-02	ci left: 9.079222e-01	ci right 9.190356e-01	k: 9136	n:10000
CCNL2   10000 perm   2 sec   (5909 perm/sec)   p_kst 9.136000e-01   p_cons 9.215000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CCNL2.2_1633_10000_0.9136_0.9215_1.png
                gene_name: CCNL2
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
CCNY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.964110e-02	ci left: 2.321499e-01	ci right 2.490015e-01	k: 2405	n:10000
Cons ci ratio: 6.105377e-02	ci left: 2.829019e-01	ci right 3.008195e-01	k: 2918	n:10000
KS ci ratio: 6.964110e-02	ci left: 2.321499e-01	ci right 2.490015e-01	k: 2405	n:10000
CCNY   10000 perm   2 sec   (6420 perm/sec)   p_kst 2.405000e-01   p_cons 2.918000e-01   p_joint 2.405000e-01

Outputting figure to mutsig2_images.part000000000033/CCNY.2_1066_10000_0.2405_0.2918_0.2405.png
                gene_name: CCNY
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 70 percent done.
CCR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.310533e-02	ci left: 3.432297e-01	ci right 3.620562e-01	k: 3526	n:10000
Cons ci ratio: 3.011568e-02	ci left: 6.192445e-01	ci right 6.382804e-01	k: 6288	n:10000
KS ci ratio: 2.757973e-01	ci left: 1.706687e-02	ci right 2.261782e-02	k: 197	n:10000
CCR5   10000 perm   2 sec   (5076 perm/sec)   p_kst 1.970000e-02   p_cons 6.288000e-01   p_joint 3.526000e-01

Joint ci ratio: 4.141170e-02	ci left: 3.029471e-01	ci right 3.158084e-01	k: 6187	n:20000
Cons ci ratio: 2.131654e-02	ci left: 6.216094e-01	ci right 6.350533e-01	k: 12567	n:20000
KS ci ratio: 1.894834e-01	ci left: 1.896235e-02	ci right 2.297861e-02	k: 418	n:20000
CCR5   20000 perm   4 sec   (4458 perm/sec)   p_kst 2.090000e-02   p_cons 6.283500e-01   p_joint 3.093500e-01

Joint ci ratio: 2.469836e-02	ci left: 4.507514e-01	ci right 4.620570e-01	k: 13692	n:30000
Cons ci ratio: 1.739708e-02	ci left: 6.230701e-01	ci right 6.340384e-01	k: 18857	n:30000
KS ci ratio: 1.554097e-01	ci left: 1.915081e-02	ci right 2.240959e-02	k: 622	n:30000
CCR5   30000 perm   7 sec   (4182 perm/sec)   p_kst 2.073333e-02   p_cons 6.285667e-01   p_joint 4.564000e-01

Joint ci ratio: 2.859299e-02	ci left: 3.150807e-01	ci right 3.242455e-01	k: 12786	n:40000
Cons ci ratio: 1.506375e-02	ci left: 6.238934e-01	ci right 6.333880e-01	k: 25146	n:40000
KS ci ratio: 1.329372e-01	ci left: 1.985904e-02	ci right 2.271105e-02	k: 850	n:40000
CCR5   40000 perm   10 sec   (4022 perm/sec)   p_kst 2.125000e-02   p_cons 6.286500e-01   p_joint 3.196500e-01

Joint ci ratio: 2.559289e-02	ci left: 3.152541e-01	ci right 3.234469e-01	k: 15967	n:50000
Cons ci ratio: 1.351883e-02	ci left: 6.228240e-01	ci right 6.313212e-01	k: 31354	n:50000
KS ci ratio: 1.182093e-01	ci left: 2.024649e-02	ci right 2.280948e-02	k: 1075	n:50000
CCR5   50000 perm   13 sec   (3878 perm/sec)   p_kst 2.150000e-02   p_cons 6.270800e-01   p_joint 3.193400e-01

Joint ci ratio: 2.549056e-02	ci left: 2.790991e-01	ci right 2.863220e-01	k: 16962	n:60000
Cons ci ratio: 1.236070e-02	ci left: 6.224480e-01	ci right 6.302064e-01	k: 37580	n:60000
KS ci ratio: 1.081328e-01	ci left: 2.027316e-02	ci right 2.260679e-02	k: 1285	n:60000
CCR5   60000 perm   16 sec   (3797 perm/sec)   p_kst 2.141667e-02   p_cons 6.263333e-01   p_joint 2.827000e-01

Joint ci ratio: 2.160665e-02	ci left: 3.163596e-01	ci right 3.232840e-01	k: 22387	n:70000
Cons ci ratio: 1.144672e-02	ci left: 6.226179e-01	ci right 6.298002e-01	k: 43835	n:70000
KS ci ratio: 9.934740e-02	ci left: 2.067517e-02	ci right 2.285043e-02	k: 1522	n:70000
CCR5   70000 perm   18 sec   (3785 perm/sec)   p_kst 2.174286e-02   p_cons 6.262143e-01   p_joint 3.198143e-01

Outputting figure to mutsig2_images.part000000000033/CCR5.2_1063_70000_0.021743_0.62621_0.31981.png
                gene_name: CCR5
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.32 

Current progress: 72 percent done.
CCR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.802049e-02	ci left: 6.524314e-01	ci right 6.710743e-01	k: 6618	n:10000
Cons ci ratio: 6.665108e-02	ci left: 2.483582e-01	ci right 2.655836e-01	k: 2569	n:10000
KS ci ratio: 1.217355e-02	ci left: 9.063796e-01	ci right 9.175790e-01	k: 9121	n:10000
CCR6   10000 perm   2 sec   (6414 perm/sec)   p_kst 9.121000e-01   p_cons 2.569000e-01   p_joint 6.618000e-01

Outputting figure to mutsig2_images.part000000000033/CCR6.2_1133_10000_0.9121_0.2569_0.6618.png
                gene_name: CCR6
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 74 percent done.
CCT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.207474e-02	ci left: 3.521745e-01	ci right 3.711061e-01	k: 3616	n:10000
Cons ci ratio: 9.499402e-02	ci left: 1.385451e-01	ci right 1.524621e-01	k: 1454	n:10000
KS ci ratio: 9.514713e-02	ci left: 1.381531e-01	ci right 1.520544e-01	k: 1450	n:10000
CCT4   10000 perm   2 sec   (5889 perm/sec)   p_kst 1.450000e-01   p_cons 1.454000e-01   p_joint 3.616000e-01

Outputting figure to mutsig2_images.part000000000033/CCT4.2_1676_10000_0.145_0.1454_0.3616.png
                gene_name: CCT4
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 76 percent done.
CD160
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.542886e-02	ci left: 3.240605e-01	ci right 3.426367e-01	k: 3333	n:10000
Cons ci ratio: 6.109811e-02	ci left: 2.826046e-01	ci right 3.005169e-01	k: 2915	n:10000
KS ci ratio: 5.310533e-02	ci left: 3.432297e-01	ci right 3.620562e-01	k: 3526	n:10000
CD160   10000 perm   2 sec   (6553 perm/sec)   p_kst 3.526000e-01   p_cons 2.915000e-01   p_joint 3.333000e-01

Outputting figure to mutsig2_images.part000000000033/CD160.2_562_10000_0.3526_0.2915_0.3333.png
                gene_name: CD160
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 78 percent done.
CD177
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.521587e-02	ci left: 6.982727e-01	ci right 7.162065e-01	k: 7073	n:10000
KS ci ratio: 4.317267e-02	ci left: 4.420111e-01	ci right 4.616170e-01	k: 4518	n:10000
CD177   10000 perm   2 sec   (5483 perm/sec)   p_kst 4.518000e-01   p_cons 7.073000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD177.2_1350_10000_0.4518_0.7073_1.png
                gene_name: CD177
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
CD1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.432366e-02	ci left: 4.290429e-01	ci right 4.485928e-01	k: 4388	n:10000
KS ci ratio: 6.033790e-02	ci left: 2.877571e-01	ci right 3.057615e-01	k: 2967	n:10000
CD1D   10000 perm   2 sec   (6410 perm/sec)   p_kst 2.967000e-01   p_cons 4.388000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000033/CD1D.2_1032_10000_0.2967_0.4388_1.png
                gene_name: CD1D
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
CD200
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.387659e-02	ci left: 4.340298e-01	ci right 4.536029e-01	k: 4438	n:10000
Cons ci ratio: 5.234648e-02	ci left: 3.497889e-01	ci right 3.686932e-01	k: 3592	n:10000
KS ci ratio: 9.320203e-02	ci left: 1.432503e-01	ci right 1.573541e-01	k: 1502	n:10000
CD200   10000 perm   2 sec   (6430 perm/sec)   p_kst 1.502000e-01   p_cons 3.592000e-01   p_joint 4.438000e-01

Outputting figure to mutsig2_images.part000000000033/CD200.2_913_10000_0.1502_0.3592_0.4438.png
                gene_name: CD200
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 83 percent done.
CD207
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.166431e-02	ci left: 5.954396e-01	ci right 6.146991e-01	k: 6051	n:10000
Cons ci ratio: 3.648198e-02	ci left: 5.259661e-01	ci right 5.456130e-01	k: 5358	n:10000
KS ci ratio: 2.840946e-02	ci left: 6.461925e-01	ci right 6.649168e-01	k: 6556	n:10000
CD207   10000 perm   2 sec   (4647 perm/sec)   p_kst 6.556000e-01   p_cons 5.358000e-01   p_joint 6.051000e-01

Outputting figure to mutsig2_images.part000000000033/CD207.2_1011_10000_0.6556_0.5358_0.6051.png
                gene_name: CD207
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 85 percent done.
CD247
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.485100e-02	ci left: 7.043254e-01	ci right 7.221502e-01	k: 7133	n:10000
Cons ci ratio: 2.708085e-02	ci left: 6.676335e-01	ci right 6.860634e-01	k: 6769	n:10000
KS ci ratio: 6.073045e-02	ci left: 2.850816e-01	ci right 3.030385e-01	k: 2940	n:10000
CD247   10000 perm   2 sec   (5888 perm/sec)   p_kst 2.940000e-01   p_cons 6.769000e-01   p_joint 7.133000e-01

Outputting figure to mutsig2_images.part000000000033/CD247.2_527_10000_0.294_0.6769_0.7133.png
                gene_name: CD247
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 87 percent done.
CD28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.940616e-01	ci left: 3.538572e-02	ci right 4.308567e-02	k: 391	n:10000
Cons ci ratio: 1.109326e-01	ci left: 1.048095e-01	ci right 1.172181e-01	k: 1109	n:10000
KS ci ratio: 1.057999e-01	ci left: 1.142783e-01	ci right 1.271436e-01	k: 1206	n:10000
CD28   10000 perm   1 sec   (6960 perm/sec)   p_kst 1.206000e-01   p_cons 1.109000e-01   p_joint 3.910000e-02

Joint ci ratio: 1.036418e-01	ci left: 6.328032e-02	ci right 7.024628e-02	k: 1334	n:20000
Cons ci ratio: 7.842279e-02	ci left: 1.066782e-01	ci right 1.154352e-01	k: 2220	n:20000
KS ci ratio: 7.479556e-02	ci left: 1.162154e-01	ci right 1.252952e-01	k: 2414	n:20000
CD28   20000 perm   3 sec   (5892 perm/sec)   p_kst 1.207000e-01   p_cons 1.110000e-01   p_joint 6.670000e-02

Joint ci ratio: 1.088567e-01	ci left: 3.917357e-02	ci right 4.371578e-02	k: 1242	n:30000
Cons ci ratio: 6.382242e-02	ci left: 1.081237e-01	ci right 1.152850e-01	k: 3350	n:30000
KS ci ratio: 6.168721e-02	ci left: 1.149618e-01	ci right 1.223123e-01	k: 3558	n:30000
CD28   30000 perm   6 sec   (5252 perm/sec)   p_kst 1.186000e-01   p_cons 1.116667e-01   p_joint 4.140000e-02

Joint ci ratio: 6.846285e-02	ci left: 7.315075e-02	ci right 7.836104e-02	k: 3029	n:40000
Cons ci ratio: 5.592225e-02	ci left: 1.063323e-01	ci right 1.124745e-01	k: 4375	n:40000
KS ci ratio: 5.367556e-02	ci left: 1.144832e-01	ci right 1.208224e-01	k: 4705	n:40000
CD28   40000 perm   8 sec   (5147 perm/sec)   p_kst 1.176250e-01   p_cons 1.093750e-01   p_joint 7.572500e-02

Outputting figure to mutsig2_images.part000000000033/CD28.2_679_40000_0.11762_0.10938_0.075725.png
                gene_name: CD28
               theta_stop: 0.068 
                    nperm: 40000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.078 

Current progress: 89 percent done.
CD300E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.047793e-02	ci left: 6.136175e-01	ci right 6.327106e-01	k: 6232	n:10000
Cons ci ratio: 2.180494e-02	ci left: 7.552478e-01	ci right 7.719984e-01	k: 7637	n:10000
KS ci ratio: 4.177929e-02	ci left: 4.582806e-01	ci right 4.779380e-01	k: 4681	n:10000
CD300E   10000 perm   2 sec   (6532 perm/sec)   p_kst 4.681000e-01   p_cons 7.637000e-01   p_joint 6.232000e-01

Outputting figure to mutsig2_images.part000000000033/CD300E.2_634_10000_0.4681_0.7637_0.6232.png
                gene_name: CD300E
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 91 percent done.
CD33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.291907e-01	ci left: 7.882909e-02	ci right 8.981448e-02	k: 842	n:10000
Cons ci ratio: 5.914541e-02	ci left: 2.960832e-01	ci right 3.142305e-01	k: 3051	n:10000
KS ci ratio: 2.613506e-01	ci left: 1.912136e-02	ci right 2.496169e-02	k: 219	n:10000
CD33   10000 perm   2 sec   (6313 perm/sec)   p_kst 2.190000e-02   p_cons 3.051000e-01   p_joint 8.420000e-02

Joint ci ratio: 1.143993e-01	ci left: 5.226943e-02	ci right 5.866058e-02	k: 1108	n:20000
Cons ci ratio: 4.184198e-02	ci left: 2.985732e-01	ci right 3.113835e-01	k: 6099	n:20000
KS ci ratio: 1.833216e-01	ci left: 2.029828e-02	ci right 2.444220e-02	k: 446	n:20000
CD33   20000 perm   4 sec   (5515 perm/sec)   p_kst 2.230000e-02   p_cons 3.049500e-01   p_joint 5.540000e-02

Joint ci ratio: 7.423823e-02	ci left: 8.186784e-02	ci right 8.821279e-02	k: 2550	n:30000
Cons ci ratio: 3.438268e-02	ci left: 2.970727e-01	ci right 3.074990e-01	k: 9068	n:30000
KS ci ratio: 1.528002e-01	ci left: 1.982433e-02	ci right 2.313591e-02	k: 643	n:30000
CD33   30000 perm   6 sec   (5228 perm/sec)   p_kst 2.143333e-02   p_cons 3.022667e-01   p_joint 8.500000e-02

Joint ci ratio: 6.430618e-02	ci left: 8.226007e-02	ci right 8.775035e-02	k: 3399	n:40000
Cons ci ratio: 2.970059e-02	ci left: 2.988469e-01	ci right 3.078817e-01	k: 12134	n:40000
KS ci ratio: 1.303020e-01	ci left: 2.068161e-02	ci right 2.358834e-02	k: 884	n:40000
CD33   40000 perm   8 sec   (4868 perm/sec)   p_kst 2.210000e-02   p_cons 3.033500e-01   p_joint 8.497500e-02

Joint ci ratio: 5.679019e-02	ci left: 8.452394e-02	ci right 8.948414e-02	k: 4349	n:50000
Cons ci ratio: 2.648198e-02	ci left: 3.006470e-01	ci right 3.087356e-01	k: 15234	n:50000
KS ci ratio: 1.162373e-01	ci left: 2.094581e-02	ci right 2.355006e-02	k: 1111	n:50000
CD33   50000 perm   11 sec   (4730 perm/sec)   p_kst 2.222000e-02   p_cons 3.046800e-01   p_joint 8.698000e-02

Joint ci ratio: 5.153996e-02	ci left: 8.566248e-02	ci right 9.021080e-02	k: 5275	n:60000
Cons ci ratio: 2.411865e-02	ci left: 3.019816e-01	ci right 3.093705e-01	k: 18340	n:60000
KS ci ratio: 1.067829e-01	ci left: 2.079245e-02	ci right 2.315411e-02	k: 1317	n:60000
CD33   60000 perm   13 sec   (4631 perm/sec)   p_kst 2.195000e-02   p_cons 3.056667e-01   p_joint 8.791667e-02

Joint ci ratio: 4.767574e-02	ci left: 8.596785e-02	ci right 9.018065e-02	k: 6164	n:70000
Cons ci ratio: 2.232941e-02	ci left: 3.022596e-01	ci right 3.090994e-01	k: 21397	n:70000
KS ci ratio: 9.938075e-02	ci left: 2.066124e-02	ci right 2.283580e-02	k: 1521	n:70000
CD33   70000 perm   15 sec   (4539 perm/sec)   p_kst 2.172857e-02   p_cons 3.056714e-01   p_joint 8.805714e-02

Outputting figure to mutsig2_images.part000000000033/CD33.2_1136_70000_0.021729_0.30567_0.088057.png
                gene_name: CD33
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.090 

Current progress: 93 percent done.
CD37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.030980e-01	ci left: 1.197510e-01	ci right 1.328675e-01	k: 1262	n:10000
Cons ci ratio: 4.037980e-02	ci left: 4.752601e-01	ci right 4.949486e-01	k: 4851	n:10000
KS ci ratio: 3.634162e-01	ci left: 9.412543e-03	ci right 1.367914e-02	k: 114	n:10000
CD37   10000 perm   2 sec   (6539 perm/sec)   p_kst 1.140000e-02   p_cons 4.851000e-01   p_joint 1.262000e-01

Joint ci ratio: 5.770006e-02	ci left: 1.820619e-01	ci right 1.929291e-01	k: 3749	n:20000
Cons ci ratio: 2.838413e-02	ci left: 4.811496e-01	ci right 4.950539e-01	k: 9762	n:20000
KS ci ratio: 2.558573e-01	ci left: 1.011552e-02	ci right 1.312898e-02	k: 231	n:20000
CD37   20000 perm   4 sec   (5662 perm/sec)   p_kst 1.155000e-02   p_cons 4.881000e-01   p_joint 1.874500e-01

Joint ci ratio: 5.700331e-02	ci left: 1.322715e-01	ci right 1.400658e-01	k: 4084	n:30000
Cons ci ratio: 2.314525e-02	ci left: 4.830948e-01	ci right 4.944407e-01	k: 14663	n:30000
KS ci ratio: 2.068140e-01	ci left: 1.060884e-02	ci right 1.308704e-02	k: 354	n:30000
CD37   30000 perm   6 sec   (5336 perm/sec)   p_kst 1.180000e-02   p_cons 4.887667e-01   p_joint 1.361333e-01

Joint ci ratio: 5.289515e-02	ci left: 1.175225e-01	ci right 1.239326e-01	k: 4828	n:40000
Cons ci ratio: 1.998623e-02	ci left: 4.853144e-01	ci right 4.951370e-01	k: 19609	n:40000
KS ci ratio: 1.829254e-01	ci left: 1.031113e-02	ci right 1.241071e-02	k: 453	n:40000
CD37   40000 perm   8 sec   (5131 perm/sec)   p_kst 1.132500e-02   p_cons 4.902250e-01   p_joint 1.207000e-01

Joint ci ratio: 5.283884e-02	ci left: 9.653384e-02	ci right 1.017928e-01	k: 4957	n:50000
Cons ci ratio: 1.782084e-02	ci left: 4.873886e-01	ci right 4.961724e-01	k: 24589	n:50000
KS ci ratio: 1.660733e-01	ci left: 1.010424e-02	ci right 1.195319e-02	k: 550	n:50000
CD37   50000 perm   11 sec   (4705 perm/sec)   p_kst 1.100000e-02   p_cons 4.917800e-01   p_joint 9.914000e-02

Joint ci ratio: 4.808095e-02	ci left: 9.733030e-02	ci right 1.021418e-01	k: 5983	n:60000
Cons ci ratio: 1.629633e-02	ci left: 4.869088e-01	ci right 4.949255e-01	k: 29455	n:60000
KS ci ratio: 1.505937e-01	ci left: 1.032519e-02	ci right 1.202259e-02	k: 669	n:60000
CD37   60000 perm   13 sec   (4472 perm/sec)   p_kst 1.115000e-02   p_cons 4.909167e-01   p_joint 9.971667e-02

Joint ci ratio: 4.972456e-02	ci left: 7.951165e-02	ci right 8.358026e-02	k: 5707	n:70000
Cons ci ratio: 1.509450e-02	ci left: 4.869757e-01	ci right 4.943965e-01	k: 34348	n:70000
KS ci ratio: 1.399367e-01	ci left: 1.030946e-02	ci right 1.187432e-02	k: 775	n:70000
CD37   70000 perm   17 sec   (4214 perm/sec)   p_kst 1.107143e-02   p_cons 4.906857e-01   p_joint 8.152857e-02

Joint ci ratio: 3.496574e-02	ci left: 1.333959e-01	ci right 1.381556e-01	k: 10861	n:80000
Cons ci ratio: 1.410831e-02	ci left: 4.876174e-01	ci right 4.945582e-01	k: 39287	n:80000
KS ci ratio: 1.292048e-01	ci left: 1.063957e-02	ci right 1.212119e-02	k: 909	n:80000
CD37   80000 perm   19 sec   (4140 perm/sec)   p_kst 1.136250e-02   p_cons 4.910875e-01   p_joint 1.357625e-01

Joint ci ratio: 4.143683e-02	ci left: 8.856726e-02	ci right 9.232585e-02	k: 8139	n:90000
Cons ci ratio: 1.329700e-02	ci left: 4.879842e-01	ci right 4.945275e-01	k: 44213	n:90000
KS ci ratio: 1.221630e-01	ci left: 1.061968e-02	ci right 1.201209e-02	k: 1017	n:90000
CD37   90000 perm   22 sec   (4084 perm/sec)   p_kst 1.130000e-02   p_cons 4.912556e-01   p_joint 9.043333e-02

Joint ci ratio: 3.936657e-02	ci left: 8.843139e-02	ci right 9.199242e-02	k: 9020	n:100000
Cons ci ratio: 1.259563e-02	ci left: 4.889067e-01	ci right 4.951138e-01	k: 49201	n:100000
KS ci ratio: 1.162120e-01	ci left: 1.059581e-02	ci right 1.191277e-02	k: 1124	n:100000
CD37   100000 perm   25 sec   (4039 perm/sec)   p_kst 1.124000e-02   p_cons 4.920100e-01   p_joint 9.020000e-02

Joint ci ratio: 3.759727e-02	ci left: 8.824297e-02	ci right 9.163323e-02	k: 9892	n:110000
Cons ci ratio: 1.200667e-02	ci left: 4.891686e-01	ci right 4.950864e-01	k: 54134	n:110000
KS ci ratio: 1.109626e-01	ci left: 1.059532e-02	ci right 1.184884e-02	k: 1233	n:110000
CD37   110000 perm   28 sec   (3907 perm/sec)   p_kst 1.120909e-02   p_cons 4.921273e-01   p_joint 8.992727e-02

Joint ci ratio: 3.594611e-02	ci left: 8.854361e-02	ci right 9.179290e-02	k: 10819	n:120000
Cons ci ratio: 1.149002e-02	ci left: 4.895341e-01	ci right 4.951996e-01	k: 59084	n:120000
KS ci ratio: 1.066877e-01	ci left: 1.053112e-02	ci right 1.172602e-02	k: 1334	n:120000
CD37   120000 perm   32 sec   (3751 perm/sec)   p_kst 1.111667e-02   p_cons 4.923667e-01   p_joint 9.015833e-02

Joint ci ratio: 3.293530e-02	ci left: 9.664092e-02	ci right 9.988472e-02	k: 12773	n:130000
Cons ci ratio: 1.102953e-02	ci left: 4.900863e-01	ci right 4.955294e-01	k: 64065	n:130000
KS ci ratio: 1.024039e-01	ci left: 1.057504e-02	ci right 1.172385e-02	k: 1448	n:130000
CD37   130000 perm   35 sec   (3669 perm/sec)   p_kst 1.113846e-02   p_cons 4.928077e-01   p_joint 9.825385e-02

Joint ci ratio: 3.176237e-02	ci left: 9.656084e-02	ci right 9.968440e-02	k: 13736	n:140000
Cons ci ratio: 1.062363e-02	ci left: 4.904063e-01	ci right 4.956511e-01	k: 69024	n:140000
KS ci ratio: 9.891829e-02	ci left: 1.054383e-02	ci right 1.164799e-02	k: 1552	n:140000
CD37   140000 perm   39 sec   (3595 perm/sec)   p_kst 1.108571e-02   p_cons 4.930286e-01   p_joint 9.811429e-02

Outputting figure to mutsig2_images.part000000000033/CD37.2_878_140000_0.011086_0.49303_0.098114.png
                gene_name: CD37
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.100 

Current progress: 94 percent done.
CD38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.659224e-02	ci left: 1.345280e-01	ci right 1.482816e-01	k: 1413	n:10000
Cons ci ratio: 5.184518e-03	ci left: 9.801637e-01	ci right 9.853496e-01	k: 9829	n:10000
KS ci ratio: 2.344190e-01	ci left: 2.400584e-02	ci right 3.047352e-02	k: 271	n:10000
CD38   10000 perm   2 sec   (5081 perm/sec)   p_kst 2.710000e-02   p_cons 9.829000e-01   p_joint 1.413000e-01

Joint ci ratio: 4.420709e-02	ci left: 2.759198e-01	ci right 2.884436e-01	k: 5643	n:20000
Cons ci ratio: 3.698871e-03	ci left: 9.806385e-01	ci right 9.843193e-01	k: 19651	n:20000
KS ci ratio: 1.649854e-01	ci left: 2.518148e-02	ci right 2.975729e-02	k: 548	n:20000
CD38   20000 perm   4 sec   (4538 perm/sec)   p_kst 2.740000e-02   p_cons 9.825500e-01   p_joint 2.821500e-01

Joint ci ratio: 3.380727e-02	ci left: 3.042045e-01	ci right 3.146991e-01	k: 9283	n:30000
Cons ci ratio: 2.952192e-03	ci left: 9.817855e-01	ci right 9.847198e-01	k: 29499	n:30000
KS ci ratio: 1.320554e-01	ci left: 2.664618e-02	ci right 3.044585e-02	k: 855	n:30000
CD38   30000 perm   7 sec   (4358 perm/sec)   p_kst 2.850000e-02   p_cons 9.833000e-01   p_joint 3.094333e-01

Joint ci ratio: 4.027252e-02	ci left: 1.876291e-01	ci right 1.953657e-01	k: 7659	n:40000
Cons ci ratio: 2.571578e-03	ci left: 9.817887e-01	ci right 9.843405e-01	k: 39324	n:40000
KS ci ratio: 1.151626e-01	ci left: 2.652662e-02	ci right 2.979236e-02	k: 1125	n:40000
CD38   40000 perm   9 sec   (4217 perm/sec)   p_kst 2.812500e-02   p_cons 9.831000e-01   p_joint 1.914750e-01

Joint ci ratio: 3.521108e-02	ci left: 1.951306e-01	ci right 2.021444e-01	k: 9931	n:50000
Cons ci ratio: 2.306676e-03	ci left: 9.818284e-01	ci right 9.841150e-01	k: 49150	n:50000
KS ci ratio: 1.025001e-01	ci left: 2.696141e-02	ci right 2.989368e-02	k: 1420	n:50000
CD38   50000 perm   12 sec   (4138 perm/sec)   p_kst 2.840000e-02   p_cons 9.830000e-01   p_joint 1.986200e-01

Joint ci ratio: 2.960605e-02	ci left: 2.227579e-01	ci right 2.294686e-01	k: 13566	n:60000
Cons ci ratio: 2.137793e-03	ci left: 9.814017e-01	ci right 9.835180e-01	k: 58949	n:60000
KS ci ratio: 9.332194e-02	ci left: 2.723195e-02	ci right 2.991391e-02	k: 1713	n:60000
CD38   60000 perm   15 sec   (4060 perm/sec)   p_kst 2.855000e-02   p_cons 9.824833e-01   p_joint 2.261000e-01

Outputting figure to mutsig2_images.part000000000033/CD38.2_935_60000_0.02855_0.98248_0.2261.png
                gene_name: CD38
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 96 percent done.
CD3G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.303421e-02	ci left: 8.944660e-01	ci right 9.062996e-01	k: 9005	n:10000
Cons ci ratio: 5.486017e-02	ci left: 3.286278e-01	ci right 3.472667e-01	k: 3379	n:10000
KS ci ratio: 1.530929e-02	ci left: 8.609022e-01	ci right 8.742829e-01	k: 8677	n:10000
CD3G   10000 perm   2 sec   (5854 perm/sec)   p_kst 8.677000e-01   p_cons 3.379000e-01   p_joint 9.005000e-01

Outputting figure to mutsig2_images.part000000000033/CD3G.2_573_10000_0.8677_0.3379_0.9005.png
                gene_name: CD3G
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 98 percent done.
CD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.306344e-01	ci left: 7.717981e-02	ci right 8.806479e-02	k: 825	n:10000
Cons ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
KS ci ratio: 5.086757e-02	ci left: 3.630124e-01	ci right 3.820619e-01	k: 3725	n:10000
CD4   10000 perm   2 sec   (5804 perm/sec)   p_kst 3.725000e-01   p_cons 4.130000e-02   p_joint 8.250000e-02

Joint ci ratio: 1.118075e-01	ci left: 5.465393e-02	ci right 6.117534e-02	k: 1157	n:20000
Cons ci ratio: 1.318068e-01	ci left: 3.955227e-02	ci right 4.518176e-02	k: 846	n:20000
KS ci ratio: 3.586501e-02	ci left: 3.671882e-01	ci right 3.806485e-01	k: 7478	n:20000
CD4   20000 perm   4 sec   (4722 perm/sec)   p_kst 3.739000e-01   p_cons 4.230000e-02   p_joint 5.785000e-02

Joint ci ratio: 1.119459e-01	ci left: 3.706442e-02	ci right 4.149204e-02	k: 1177	n:30000
Cons ci ratio: 1.091317e-01	ci left: 3.897881e-02	ci right 4.351058e-02	k: 1236	n:30000
KS ci ratio: 2.921805e-02	ci left: 3.694842e-01	ci right 3.804734e-01	k: 11249	n:30000
CD4   30000 perm   7 sec   (4399 perm/sec)   p_kst 3.749667e-01   p_cons 4.120000e-02   p_joint 3.923333e-02

Joint ci ratio: 8.145870e-02	ci left: 5.249147e-02	ci right 5.697345e-02	k: 2188	n:40000
Cons ci ratio: 8.779239e-02	ci left: 4.538698e-02	ci right 4.957903e-02	k: 1898	n:40000
KS ci ratio: 2.525504e-02	ci left: 3.711251e-01	ci right 3.806429e-01	k: 15035	n:40000
CD4   40000 perm   9 sec   (4212 perm/sec)   p_kst 3.758750e-01   p_cons 4.745000e-02   p_joint 5.470000e-02

Outputting figure to mutsig2_images.part000000000033/CD4.2_1413_40000_0.37588_0.04745_0.0547.png
                gene_name: CD4
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.057 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000033
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 33 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1529>
Subject: Job 9893877: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1529>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000034> was used as the working directory.
Started at Sat Oct  6 00:02:05 2012
Results reported at Sat Oct  6 00:46:56 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000034.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000034.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 34  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000034.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2958.60 sec.
    Max Memory :      3547 MB
    Max Swap   :      5904 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
34
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 34
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 34: processing genes 2976 - 3065
Calculating significance of each gene.
Using projection method.
2976	CD44	3.085501e-01
2977	CD46	4.259370e-01
2978	CD47	1.724875e-01
2979	CD48	1
2980	CD5	4.864841e-01
2981	CD52	1.641713e-01
2982	CD53	2.688358e-01
2983	CD55	3.830623e-02
2984	CD58	3.466443e-01
2985	CD59	1
2986	CD5L	3.177218e-01
2987	CD6	3.230029e-01
2988	CD63	1.480633e-01
2989	CD68	1
2990	CD69	4.926558e-01
2991	CD7	6.656762e-01
2992	CD70	1.958838e-02
2993	CD72	1.116517e-01
2994	CD74	6.132223e-01
2995	CD79A	1.631392e-01
2996	CD79B	4.355499e-01
2997	CD80	7.807870e-01
2998	CD81	1
2999	CD82	1
3000/18030 3000	CD83	6.456264e-01
In gene CD84 the following bins exceed PROBCAP:
    COAD-AA-3854	categ 6	N = 1025    n = 1	mu =   2.96e-07
3001	CD84	6.706173e-02
3002	CD86	1
3003	CD8A	1
3004	CD8B	4.170177e-01
3005	CD9	6.831664e-01
3006	CD93	1.183169e-01
3007	CD96	6.686154e-01
3008	CD97	8.376024e-01
3009	CD99L2	7.551111e-01
3010	CDA	3.249053e-01
3011	CDADC1	1.884374e-01
3012	CDAN1	9.269742e-01
3013	CDC123	8.695682e-01
3014	CDC14A	4.660592e-01
3015	CDC14B	2.857060e-01
3016	CDC16	5.294675e-01
3017	CDC20	3.949083e-01
3018	CDC20B	1.608760e-01
3019	CDC23	1.899099e-01
3020	CDC25A	6.970734e-01
3021	CDC25B	1.151721e-01
3022	CDC25C	2.205259e-01
3023	CDC26	1
3024	CDC27	8.853558e-03
3025	CDC34	1
3026	CDC37	8.604993e-01
3027	CDC37L1	1
3028	CDC40	1.969417e-01
3029	CDC42	6.603221e-01
3030	CDC42BPA	4.036431e-01
3031	CDC42BPB	9.433426e-01
3032	CDC42BPG	9.776790e-01
3033	CDC42EP1	2.872323e-01
3034	CDC42EP2	1
3035	CDC42EP3	3.127376e-01
3036	CDC42EP4	8.650817e-01
3037	CDC42SE1	1
3038	CDC42SE2	1
3039	CDC45	9.231780e-01
3040	CDC5L	8.473471e-01
3041	CDC6	9.373105e-01
3042	CDC7	5.186940e-01
3043	CDC73	2.702356e-02
3044	CDCA2	3.186805e-01
3045	CDCA3	2.026245e-02
3046	CDCA4	3.225873e-01
3047	CDCA5	4.198129e-01
3048	CDCA7	7.924820e-01
3049	CDCA7L	1.672049e-01
3050	CDCA8	1.505485e-01
3051	CDCP1	8.255929e-01
3052	CDCP2	3.168665e-02
3053	CDH1	3.478446e-01
3054	CDH10	3.228175e-05
3055	CDH11	4.146034e-05
3056	CDH12	4.690596e-05
3057	CDH13	2.728926e-01
3058	CDH15	9.699237e-01
3059	CDH16	2.568347e-01
3060	CDH17	9.341915e-02
3061	CDH18	6.088531e-05
3062	CDH19	4.891893e-02
3063	CDH2	3.804469e-06
3064	CDH20	2.978871e-01
3065	CDH22	1.756250e-02
Done

Running MutSig 2:
Scatter job 34: processing genes 2976 - 3065
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CDH10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.411746e-02	ci left: 7.165376e-01	ci right 7.341309e-01	k: 7254	n:10000
Cons ci ratio: 4.627510e-02	ci left: 4.080090e-01	ci right 4.274390e-01	k: 4177	n:10000
KS ci ratio: 2.560606e-02	ci left: 6.918185e-01	ci right 7.098644e-01	k: 7009	n:10000
CDH10   10000 perm   3 sec   (3860 perm/sec)   p_kst 7.009000e-01   p_cons 4.177000e-01   p_joint 7.254000e-01

Outputting figure to mutsig2_images.part000000000034/CDH10.23_2411_10000_0.7009_0.4177_0.7254.png
                gene_name: CDH10
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 2 percent done.
CDH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.388648e-01	ci left: 6.865367e-02	ci right 7.899624e-02	k: 737	n:10000
Cons ci ratio: 4.845369e-02	ci left: 3.858982e-01	ci right 4.051627e-01	k: 3955	n:10000
KS ci ratio: 2.022577e-01	ci left: 3.252956e-02	ci right 3.994377e-02	k: 361	n:10000
CDH2   10000 perm   2 sec   (4092 perm/sec)   p_kst 3.610000e-02   p_cons 3.955000e-01   p_joint 7.370000e-02

Joint ci ratio: 1.017359e-01	ci left: 6.557403e-02	ci right 7.265187e-02	k: 1381	n:20000
Cons ci ratio: 3.424019e-02	ci left: 3.890630e-01	ci right 4.026673e-01	k: 7917	n:20000
KS ci ratio: 1.422079e-01	ci left: 3.399185e-02	ci right 3.924397e-02	k: 731	n:20000
CDH2   20000 perm   5 sec   (3768 perm/sec)   p_kst 3.655000e-02   p_cons 3.958500e-01   p_joint 6.905000e-02

Joint ci ratio: 7.525847e-02	ci left: 7.980370e-02	ci right 8.607735e-02	k: 2487	n:30000
Cons ci ratio: 2.806240e-02	ci left: 3.885310e-01	ci right 3.996229e-01	k: 11822	n:30000
KS ci ratio: 1.175657e-01	ci left: 3.362884e-02	ci right 3.786168e-02	k: 1071	n:30000
CDH2   30000 perm   8 sec   (3658 perm/sec)   p_kst 3.570000e-02   p_cons 3.940667e-01   p_joint 8.290000e-02

Joint ci ratio: 7.083028e-02	ci left: 6.860023e-02	ci right 7.366225e-02	k: 2844	n:40000
Cons ci ratio: 2.432564e-02	ci left: 3.888326e-01	ci right 3.984328e-01	k: 15745	n:40000
KS ci ratio: 1.024613e-01	ci left: 3.348849e-02	ci right 3.712938e-02	k: 1411	n:40000
CDH2   40000 perm   11 sec   (3571 perm/sec)   p_kst 3.527500e-02   p_cons 3.936250e-01   p_joint 7.110000e-02

Joint ci ratio: 6.952389e-02	ci left: 5.769788e-02	ci right 6.187341e-02	k: 2988	n:50000
Cons ci ratio: 2.057500e-02	ci left: 4.162677e-01	ci right 4.249415e-01	k: 21030	n:50000
KS ci ratio: 9.180625e-02	ci left: 3.356262e-02	ci right 3.681164e-02	k: 1758	n:50000
CDH2   50000 perm   14 sec   (3518 perm/sec)   p_kst 3.516000e-02   p_cons 4.206000e-01   p_joint 5.976000e-02

Outputting figure to mutsig2_images.part000000000034/CDH2.22_2785_50000_0.03516_0.4206_0.05976.png
                gene_name: CDH2
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 3 percent done.
CDH18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.452325e-01	ci left: 6.294902e-02	ci right 7.290448e-02	k: 678	n:10000
Cons ci ratio: 1.002121e-01	ci left: 1.260106e-01	ci right 1.394041e-01	k: 1326	n:10000
KS ci ratio: 1.294424e-01	ci left: 7.853799e-02	ci right 8.950576e-02	k: 839	n:10000
CDH18   10000 perm   2 sec   (4441 perm/sec)   p_kst 8.390000e-02   p_cons 1.326000e-01   p_joint 6.780000e-02

Joint ci ratio: 1.083252e-01	ci left: 5.811191e-02	ci right 6.481629e-02	k: 1228	n:20000
Cons ci ratio: 6.374759e-02	ci left: 1.539076e-01	ci right 1.640918e-01	k: 3179	n:20000
KS ci ratio: 9.326961e-02	ci left: 7.735273e-02	ci right 8.496956e-02	k: 1622	n:20000
CDH18   20000 perm   5 sec   (3848 perm/sec)   p_kst 8.110000e-02   p_cons 1.589500e-01   p_joint 6.140000e-02

Joint ci ratio: 8.965876e-02	ci left: 5.720815e-02	ci right 6.261080e-02	k: 1796	n:30000
Cons ci ratio: 5.197225e-02	ci left: 1.552413e-01	ci right 1.635581e-01	k: 4781	n:30000
KS ci ratio: 7.723903e-02	ci left: 7.600462e-02	ci right 8.214385e-02	k: 2371	n:30000
CDH18   30000 perm   8 sec   (3729 perm/sec)   p_kst 7.903333e-02   p_cons 1.593667e-01   p_joint 5.986667e-02

Outputting figure to mutsig2_images.part000000000034/CDH18.16_2417_30000_0.079033_0.15937_0.059867.png
                gene_name: CDH18
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.063 

Current progress: 5 percent done.
CDH11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.610433e-02	ci left: 4.098026e-01	ci right 4.292443e-01	k: 4195	n:10000
Cons ci ratio: 1.092244e-01	ci left: 1.078341e-01	ci right 1.203917e-01	k: 1140	n:10000
KS ci ratio: 1.133519e-02	ci left: 9.174977e-01	ci right 9.280545e-01	k: 9229	n:10000
CDH11   10000 perm   2 sec   (4624 perm/sec)   p_kst 9.229000e-01   p_cons 1.140000e-01   p_joint 4.195000e-01

Joint ci ratio: 3.166774e-02	ci left: 4.268666e-01	ci right 4.406526e-01	k: 8675	n:20000
Cons ci ratio: 7.296871e-02	ci left: 1.214797e-01	ci right 1.307293e-01	k: 2521	n:20000
KS ci ratio: 7.945682e-03	ci left: 9.203426e-01	ci right 9.277336e-01	k: 18482	n:20000
CDH11   20000 perm   5 sec   (4224 perm/sec)   p_kst 9.241000e-01   p_cons 1.260500e-01   p_joint 4.337500e-01

Outputting figure to mutsig2_images.part000000000034/CDH11.14_2435_20000_0.9241_0.12605_0.43375.png
                gene_name: CDH11
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 7 percent done.
CDH12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.610159e-02	ci left: 6.836528e-01	ci right 7.018348e-01	k: 6928	n:10000
Cons ci ratio: 7.808098e-02	ci left: 1.933804e-01	ci right 2.091940e-01	k: 2012	n:10000
KS ci ratio: 2.669787e-02	ci left: 6.738786e-01	ci right 6.922147e-01	k: 6831	n:10000
CDH12   10000 perm   2 sec   (4470 perm/sec)   p_kst 6.831000e-01   p_cons 2.012000e-01   p_joint 6.928000e-01

Outputting figure to mutsig2_images.part000000000034/CDH12.14_2429_10000_0.6831_0.2012_0.6928.png
                gene_name: CDH12
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 8 percent done.
CDC27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.093325e-01	ci left: 1.076389e-01	ci right 1.201870e-01	k: 1138	n:10000
Cons ci ratio: 9.381559e-03	ci left: 9.412847e-01	ci right 9.502533e-01	k: 9459	n:10000
KS ci ratio: 1.696151e-01	ci left: 4.638557e-02	ci right 5.507852e-02	k: 506	n:10000
CDC27   10000 perm   2 sec   (4467 perm/sec)   p_kst 5.060000e-02   p_cons 9.459000e-01   p_joint 1.138000e-01

Joint ci ratio: 6.602120e-02	ci left: 1.448802e-01	ci right 1.548218e-01	k: 2996	n:20000
Cons ci ratio: 6.189136e-03	ci left: 9.495121e-01	ci right 9.554555e-01	k: 19051	n:20000
KS ci ratio: 1.191363e-01	ci left: 4.828298e-02	ci right 5.444828e-02	k: 1026	n:20000
CDC27   20000 perm   5 sec   (4039 perm/sec)   p_kst 5.130000e-02   p_cons 9.525500e-01   p_joint 1.498000e-01

Joint ci ratio: 6.128736e-02	ci left: 1.163101e-01	ci right 1.236970e-01	k: 3599	n:30000
Cons ci ratio: 5.096295e-03	ci left: 9.492814e-01	ci right 9.541640e-01	k: 28553	n:30000
KS ci ratio: 9.696037e-02	ci left: 4.915615e-02	ci right 5.419779e-02	k: 1549	n:30000
CDC27   30000 perm   8 sec   (3881 perm/sec)   p_kst 5.163333e-02   p_cons 9.517667e-01   p_joint 1.199667e-01

Outputting figure to mutsig2_images.part000000000034/CDC27.13_2569_30000_0.051633_0.95177_0.11997.png
                gene_name: CDC27
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 10 percent done.
CDC42BPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.303562e-02	ci left: 3.438259e-01	ci right 3.626596e-01	k: 3532	n:10000
Cons ci ratio: 8.664465e-02	ci left: 1.624881e-01	ci right 1.773047e-01	k: 1698	n:10000
KS ci ratio: 4.137882e-02	ci left: 4.630737e-01	ci right 4.827421e-01	k: 4729	n:10000
CDC42BPA   10000 perm   3 sec   (3963 perm/sec)   p_kst 4.729000e-01   p_cons 1.698000e-01   p_joint 3.532000e-01

Outputting figure to mutsig2_images.part000000000034/CDC42BPA.10_5304_10000_0.4729_0.1698_0.3532.png
                gene_name: CDC42BPA
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 12 percent done.
CDH20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.702810e-02	ci left: 5.185589e-01	ci right 5.382245e-01	k: 5284	n:10000
Cons ci ratio: 6.333011e-02	ci left: 2.681458e-01	ci right 2.857843e-01	k: 2769	n:10000
KS ci ratio: 4.220110e-02	ci left: 4.532888e-01	ci right 4.729327e-01	k: 4631	n:10000
CDH20   10000 perm   2 sec   (4872 perm/sec)   p_kst 4.631000e-01   p_cons 2.769000e-01   p_joint 5.284000e-01

Outputting figure to mutsig2_images.part000000000034/CDH20.9_2450_10000_0.4631_0.2769_0.5284.png
                gene_name: CDH20
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 14 percent done.
CDH13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.302694e-02	ci left: 8.945686e-01	ci right 9.063969e-01	k: 9006	n:10000
Cons ci ratio: 3.134726e-02	ci left: 6.002590e-01	ci right 6.194770e-01	k: 6099	n:10000
KS ci ratio: 2.345856e-02	ci left: 7.275456e-01	ci right 7.449166e-01	k: 7363	n:10000
CDH13   10000 perm   2 sec   (5445 perm/sec)   p_kst 7.363000e-01   p_cons 6.099000e-01   p_joint 9.006000e-01

Outputting figure to mutsig2_images.part000000000034/CDH13.8_2198_10000_0.7363_0.6099_0.9006.png
                gene_name: CDH13
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 15 percent done.
CDH16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.173608e-02	ci left: 9.122441e-01	ci right 9.231112e-01	k: 9178	n:10000
Cons ci ratio: 5.816980e-02	ci left: 3.031235e-01	ci right 3.213860e-01	k: 3122	n:10000
KS ci ratio: 9.038022e-03	ci left: 9.451295e-01	ci right 9.538063e-01	k: 9496	n:10000
CDH16   10000 perm   2 sec   (5077 perm/sec)   p_kst 9.496000e-01   p_cons 3.122000e-01   p_joint 9.178000e-01

Outputting figure to mutsig2_images.part000000000034/CDH16.8_2558_10000_0.9496_0.3122_0.9178.png
                gene_name: CDH16
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 17 percent done.
CDH22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.339994e-02	ci left: 4.394169e-01	ci right 4.590127e-01	k: 4492	n:10000
Cons ci ratio: 7.719376e-02	ci left: 1.970258e-01	ci right 2.129464e-01	k: 2049	n:10000
KS ci ratio: 4.981796e-02	ci left: 3.727610e-01	ci right 3.919076e-01	k: 3823	n:10000
CDH22   10000 perm   2 sec   (4795 perm/sec)   p_kst 3.823000e-01   p_cons 2.049000e-01   p_joint 4.492000e-01

Outputting figure to mutsig2_images.part000000000034/CDH22.8_2531_10000_0.3823_0.2049_0.4492.png
                gene_name: CDH22
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 19 percent done.
CD93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.668597e-01	ci left: 4.792139e-02	ci right 5.674170e-02	k: 522	n:10000
Cons ci ratio: 2.631913e-01	ci left: 1.884073e-02	ci right 2.464254e-02	k: 216	n:10000
KS ci ratio: 5.960880e-02	ci left: 2.928118e-01	ci right 3.109038e-01	k: 3018	n:10000
CD93   10000 perm   2 sec   (4705 perm/sec)   p_kst 3.018000e-01   p_cons 2.160000e-02   p_joint 5.220000e-02

Joint ci ratio: 1.386114e-01	ci left: 3.577914e-02	ci right 4.115611e-02	k: 768	n:20000
Cons ci ratio: 1.904138e-01	ci left: 1.877169e-02	ci right 2.276934e-02	k: 414	n:20000
KS ci ratio: 4.086576e-02	ci left: 3.086142e-01	ci right 3.215396e-01	k: 6301	n:20000
CD93   20000 perm   5 sec   (4260 perm/sec)   p_kst 3.150500e-01   p_cons 2.070000e-02   p_joint 3.840000e-02

Joint ci ratio: 1.202678e-01	ci left: 3.213961e-02	ci right 3.628457e-02	k: 1025	n:30000
Cons ci ratio: 1.556651e-01	ci left: 1.908669e-02	ci right 2.234040e-02	k: 620	n:30000
KS ci ratio: 3.461502e-02	ci left: 2.942535e-01	ci right 3.046520e-01	k: 8983	n:30000
CD93   30000 perm   7 sec   (4033 perm/sec)   p_kst 2.994333e-01   p_cons 2.066667e-02   p_joint 3.416667e-02

Joint ci ratio: 8.060522e-02	ci left: 5.357041e-02	ci right 5.809435e-02	k: 2232	n:40000
Cons ci ratio: 1.335801e-01	ci left: 1.966558e-02	ci right 2.250455e-02	k: 842	n:40000
KS ci ratio: 2.987186e-02	ci left: 2.964323e-01	ci right 3.054466e-01	k: 12037	n:40000
CD93   40000 perm   10 sec   (3950 perm/sec)   p_kst 3.009250e-01   p_cons 2.105000e-02   p_joint 5.580000e-02

Joint ci ratio: 7.699954e-02	ci left: 4.737933e-02	ci right 5.119322e-02	k: 2463	n:50000
Cons ci ratio: 1.193479e-01	ci left: 1.985814e-02	ci right 2.239788e-02	k: 1055	n:50000
KS ci ratio: 2.681057e-02	ci left: 2.954670e-01	ci right 3.035163e-01	k: 14974	n:50000
CD93   50000 perm   13 sec   (3876 perm/sec)   p_kst 2.994800e-01   p_cons 2.110000e-02   p_joint 4.926000e-02

Joint ci ratio: 8.077798e-02	ci left: 3.623904e-02	ci right 3.930588e-02	k: 2265	n:60000
Cons ci ratio: 1.070740e-01	ci left: 2.067884e-02	ci right 2.303440e-02	k: 1310	n:60000
KS ci ratio: 2.438739e-02	ci left: 2.973145e-01	ci right 3.046714e-01	k: 18059	n:60000
CD93   60000 perm   16 sec   (3811 perm/sec)   p_kst 3.009833e-01   p_cons 2.183333e-02   p_joint 3.775000e-02

Joint ci ratio: 7.239550e-02	ci left: 3.874277e-02	ci right 4.166693e-02	k: 2813	n:70000
Cons ci ratio: 9.921429e-02	ci left: 2.073093e-02	ci right 2.290896e-02	k: 1526	n:70000
KS ci ratio: 2.265831e-02	ci left: 2.961081e-01	ci right 3.029085e-01	k: 20965	n:70000
CD93   70000 perm   19 sec   (3752 perm/sec)   p_kst 2.995000e-01   p_cons 2.180000e-02   p_joint 4.018571e-02

Outputting figure to mutsig2_images.part000000000034/CD93.7_1967_70000_0.2995_0.0218_0.040186.png
                gene_name: CD93
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 20 percent done.
CDC42BPB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.035655e-01	ci left: 1.390981e-02	ci right 1.897755e-02	k: 163	n:10000
Cons ci ratio: 4.946129e-02	ci left: 3.761441e-01	ci right 3.953225e-01	k: 3857	n:10000
KS ci ratio: 4.509198e-01	ci left: 5.814929e-03	ci right 9.281233e-03	k: 74	n:10000
CDC42BPB   10000 perm   2 sec   (4065 perm/sec)   p_kst 7.400000e-03   p_cons 3.857000e-01   p_joint 1.630000e-02

Joint ci ratio: 2.047293e-01	ci left: 1.615527e-02	ci right 1.988674e-02	k: 359	n:20000
Cons ci ratio: 3.622386e-02	ci left: 3.625560e-01	ci right 3.759820e-01	k: 7385	n:20000
KS ci ratio: 3.582663e-01	ci left: 4.885950e-03	ci right 7.061454e-03	k: 118	n:20000
CDC42BPB   20000 perm   5 sec   (3699 perm/sec)   p_kst 5.900000e-03   p_cons 3.692500e-01   p_joint 1.795000e-02

Joint ci ratio: 1.795854e-01	ci left: 1.422811e-02	ci right 1.706682e-02	k: 468	n:30000
Cons ci ratio: 2.967208e-02	ci left: 3.623065e-01	ci right 3.732524e-01	k: 11033	n:30000
KS ci ratio: 3.140424e-01	ci left: 4.356227e-03	ci right 6.008502e-03	k: 154	n:30000
CDC42BPB   30000 perm   9 sec   (3523 perm/sec)   p_kst 5.133333e-03   p_cons 3.677667e-01   p_joint 1.560000e-02

Joint ci ratio: 2.071242e-01	ci left: 7.955470e-03	ci right 9.816879e-03	k: 354	n:40000
Cons ci ratio: 2.587591e-02	ci left: 3.598308e-01	ci right 3.692889e-01	k: 14582	n:40000
KS ci ratio: 2.744276e-01	ci left: 4.378984e-03	ci right 5.794333e-03	k: 202	n:40000
CDC42BPB   40000 perm   12 sec   (3438 perm/sec)   p_kst 5.050000e-03   p_cons 3.645500e-01   p_joint 8.850000e-03

Joint ci ratio: 1.932736e-01	ci left: 7.371070e-03	ci right 8.966824e-03	k: 407	n:50000
Cons ci ratio: 2.315985e-02	ci left: 3.600200e-01	ci right 3.684758e-01	k: 18212	n:50000
KS ci ratio: 2.468039e-01	ci left: 4.400639e-03	ci right 5.657885e-03	k: 250	n:50000
CDC42BPB   50000 perm   15 sec   (3353 perm/sec)   p_kst 5.000000e-03   p_cons 3.642400e-01   p_joint 8.140000e-03

Joint ci ratio: 1.818684e-01	ci left: 6.984312e-03	ci right 8.397267e-03	k: 460	n:60000
Cons ci ratio: 2.108470e-02	ci left: 3.616450e-01	ci right 3.693681e-01	k: 21930	n:60000
KS ci ratio: 2.235175e-01	ci left: 4.530011e-03	ci right 5.685323e-03	k: 305	n:60000
CDC42BPB   60000 perm   18 sec   (3297 perm/sec)   p_kst 5.083333e-03   p_cons 3.655000e-01   p_joint 7.666667e-03

Joint ci ratio: 1.499265e-01	ci left: 8.945919e-03	ci right 1.040944e-02	k: 676	n:70000
Cons ci ratio: 1.951413e-02	ci left: 3.620878e-01	ci right 3.692376e-01	k: 25596	n:70000
KS ci ratio: 2.108308e-01	ci left: 4.396182e-03	ci right 5.445503e-03	k: 343	n:70000
CDC42BPB   70000 perm   22 sec   (3243 perm/sec)   p_kst 4.900000e-03   p_cons 3.656571e-01   p_joint 9.657143e-03

Joint ci ratio: 1.185288e-01	ci left: 1.268748e-02	ci right 1.429809e-02	k: 1078	n:80000
Cons ci ratio: 1.826842e-02	ci left: 3.619495e-01	ci right 3.686352e-01	k: 29223	n:80000
KS ci ratio: 1.960012e-01	ci left: 4.487337e-03	ci right 5.474088e-03	k: 397	n:80000
CDC42BPB   80000 perm   25 sec   (3201 perm/sec)   p_kst 4.962500e-03   p_cons 3.652875e-01   p_joint 1.347500e-02

Joint ci ratio: 1.234574e-01	ci left: 1.039344e-02	ci right 1.177168e-02	k: 996	n:90000
Cons ci ratio: 1.725338e-02	ci left: 3.613434e-01	ci right 3.676431e-01	k: 32804	n:90000
KS ci ratio: 1.855745e-01	ci left: 4.475453e-03	ci right 5.401344e-03	k: 443	n:90000
CDC42BPB   90000 perm   29 sec   (3158 perm/sec)   p_kst 4.922222e-03   p_cons 3.644889e-01   p_joint 1.106667e-02

Joint ci ratio: 1.298585e-01	ci left: 8.443294e-03	ci right 9.625447e-03	k: 902	n:100000
Cons ci ratio: 1.636269e-02	ci left: 3.616557e-01	ci right 3.676321e-01	k: 36464	n:100000
KS ci ratio: 1.762911e-01	ci left: 4.486180e-03	ci right 5.362914e-03	k: 491	n:100000
CDC42BPB   100000 perm   32 sec   (3111 perm/sec)   p_kst 4.910000e-03   p_cons 3.646400e-01   p_joint 9.020000e-03

Joint ci ratio: 1.321438e-01	ci left: 7.411668e-03	ci right 8.469068e-03	k: 872	n:110000
Cons ci ratio: 1.560443e-02	ci left: 3.617002e-01	ci right 3.673978e-01	k: 40100	n:110000
KS ci ratio: 1.673429e-01	ci left: 4.548166e-03	ci right 5.387352e-03	k: 545	n:110000
CDC42BPB   110000 perm   36 sec   (3069 perm/sec)   p_kst 4.954545e-03   p_cons 3.645455e-01   p_joint 7.927273e-03

Joint ci ratio: 1.307620e-01	ci left: 6.947045e-03	ci right 7.926985e-03	k: 891	n:120000
Cons ci ratio: 1.495450e-02	ci left: 3.613767e-01	ci right 3.668299e-01	k: 43692	n:120000
KS ci ratio: 1.611232e-01	ci left: 4.512754e-03	ci right 5.311461e-03	k: 588	n:120000
CDC42BPB   120000 perm   40 sec   (3028 perm/sec)   p_kst 4.900000e-03   p_cons 3.641000e-01   p_joint 7.425000e-03

Joint ci ratio: 1.253927e-01	ci left: 6.993448e-03	ci right 7.936414e-03	k: 969	n:130000
Cons ci ratio: 1.436927e-02	ci left: 3.614375e-01	ci right 3.666763e-01	k: 47327	n:130000
KS ci ratio: 1.540860e-01	ci left: 4.572026e-03	ci right 5.342618e-03	k: 643	n:130000
CDC42BPB   130000 perm   43 sec   (2990 perm/sec)   p_kst 4.946154e-03   p_cons 3.640538e-01   p_joint 7.453846e-03

Joint ci ratio: 9.349755e-02	ci left: 1.181989e-02	ci right 1.298615e-02	k: 1735	n:140000
Cons ci ratio: 1.335725e-02	ci left: 3.783267e-01	ci right 3.834211e-01	k: 53322	n:140000
KS ci ratio: 1.486468e-01	ci left: 4.575327e-03	ci right 5.316834e-03	k: 691	n:140000
CDC42BPB   140000 perm   47 sec   (2954 perm/sec)   p_kst 4.935714e-03   p_cons 3.808714e-01   p_joint 1.239286e-02

Joint ci ratio: 9.547510e-02	ci left: 1.058244e-02	ci right 1.164992e-02	k: 1666	n:150000
Cons ci ratio: 1.289937e-02	ci left: 3.785947e-01	ci right 3.835166e-01	k: 57158	n:150000
KS ci ratio: 1.419261e-01	ci left: 4.700762e-03	ci right 5.425239e-03	k: 758	n:150000
CDC42BPB   150000 perm   51 sec   (2917 perm/sec)   p_kst 5.053333e-03   p_cons 3.810533e-01   p_joint 1.110667e-02

Joint ci ratio: 9.392712e-02	ci left: 1.026267e-02	ci right 1.128018e-02	k: 1722	n:160000
Cons ci ratio: 1.250211e-02	ci left: 3.782075e-01	ci right 3.829718e-01	k: 60894	n:160000
KS ci ratio: 1.371302e-01	ci left: 4.732690e-03	ci right 5.435428e-03	k: 812	n:160000
CDC42BPB   160000 perm   56 sec   (2881 perm/sec)   p_kst 5.075000e-03   p_cons 3.805875e-01   p_joint 1.076250e-02

Joint ci ratio: 9.417833e-02	ci left: 9.612879e-03	ci right 1.056865e-02	k: 1714	n:170000
Cons ci ratio: 1.211944e-02	ci left: 3.786436e-01	ci right 3.832664e-01	k: 64762	n:170000
KS ci ratio: 1.334099e-01	ci left: 4.715725e-03	ci right 5.395440e-03	k: 858	n:170000
CDC42BPB   170000 perm   60 sec   (2848 perm/sec)   p_kst 5.047059e-03   p_cons 3.809529e-01   p_joint 1.008235e-02

Joint ci ratio: 8.924146e-02	ci left: 1.013202e-02	ci right 1.108384e-02	k: 1908	n:180000
Cons ci ratio: 1.177959e-02	ci left: 3.786447e-01	ci right 3.831369e-01	k: 68560	n:180000
KS ci ratio: 1.293321e-01	ci left: 4.749260e-03	ci right 5.411278e-03	k: 913	n:180000
CDC42BPB   180000 perm   64 sec   (2812 perm/sec)   p_kst 5.072222e-03   p_cons 3.808889e-01   p_joint 1.060000e-02

Joint ci ratio: 8.459992e-02	ci left: 1.070073e-02	ci right 1.165111e-02	k: 2122	n:190000
Cons ci ratio: 1.146809e-02	ci left: 3.785948e-01	ci right 3.829668e-01	k: 72348	n:190000
KS ci ratio: 1.265953e-01	ci left: 4.703079e-03	ci right 5.343745e-03	k: 953	n:190000
CDC42BPB   190000 perm   68 sec   (2779 perm/sec)   p_kst 5.015789e-03   p_cons 3.807789e-01   p_joint 1.116842e-02

Joint ci ratio: 8.286634e-02	ci left: 1.060625e-02	ci right 1.152800e-02	k: 2212	n:200000
Cons ci ratio: 1.117047e-02	ci left: 3.789558e-01	ci right 3.832176e-01	k: 76217	n:200000
KS ci ratio: 1.229117e-01	ci left: 4.748883e-03	ci right 5.375595e-03	k: 1011	n:200000
CDC42BPB   200000 perm   73 sec   (2746 perm/sec)   p_kst 5.055000e-03   p_cons 3.810850e-01   p_joint 1.106000e-02

Joint ci ratio: 8.184814e-02	ci left: 1.036231e-02	ci right 1.125127e-02	k: 2268	n:210000
Cons ci ratio: 1.089498e-02	ci left: 3.792790e-01	ci right 3.834386e-01	k: 80085	n:210000
KS ci ratio: 1.195319e-01	ci left: 4.790568e-03	ci right 5.404168e-03	k: 1069	n:210000
CDC42BPB   210000 perm   77 sec   (2715 perm/sec)   p_kst 5.090476e-03   p_cons 3.813571e-01   p_joint 1.080000e-02

Joint ci ratio: 7.974698e-02	ci left: 1.043020e-02	ci right 1.130094e-02	k: 2389	n:220000
Cons ci ratio: 1.064209e-02	ci left: 3.794332e-01	ci right 3.834972e-01	k: 83922	n:220000
KS ci ratio: 1.160037e-01	ci left: 4.863989e-03	ci right 5.467344e-03	k: 1135	n:220000
CDC42BPB   220000 perm   82 sec   (2685 perm/sec)   p_kst 5.159091e-03   p_cons 3.814636e-01   p_joint 1.085909e-02

Joint ci ratio: 7.954770e-02	ci left: 1.003202e-02	ci right 1.086734e-02	k: 2402	n:230000
Cons ci ratio: 1.040574e-02	ci left: 3.795880e-01	ci right 3.835628e-01	k: 87762	n:230000
KS ci ratio: 1.135325e-01	ci left: 4.863662e-03	ci right 5.453263e-03	k: 1185	n:230000
CDC42BPB   230000 perm   87 sec   (2656 perm/sec)   p_kst 5.152174e-03   p_cons 3.815739e-01   p_joint 1.044348e-02

Joint ci ratio: 7.378090e-02	ci left: 1.119589e-02	ci right 1.205763e-02	k: 2789	n:240000
Cons ci ratio: 1.018393e-02	ci left: 3.797558e-01	ci right 3.836471e-01	k: 91608	n:240000
KS ci ratio: 1.103192e-01	ci left: 4.944522e-03	ci right 5.525858e-03	k: 1255	n:240000
CDC42BPB   240000 perm   91 sec   (2627 perm/sec)   p_kst 5.229167e-03   p_cons 3.817000e-01   p_joint 1.162083e-02

Joint ci ratio: 6.788030e-02	ci left: 1.271694e-02	ci right 1.361440e-02	k: 3290	n:250000
Cons ci ratio: 9.974033e-03	ci left: 3.799909e-01	ci right 3.838039e-01	k: 95474	n:250000
KS ci ratio: 1.083124e-01	ci left: 4.929599e-03	ci right 5.497965e-03	k: 1302	n:250000
CDC42BPB   250000 perm   96 sec   (2598 perm/sec)   p_kst 5.208000e-03   p_cons 3.818960e-01   p_joint 1.316000e-02

Joint ci ratio: 6.714743e-02	ci left: 1.250381e-02	ci right 1.337633e-02	k: 3363	n:260000
Cons ci ratio: 9.780663e-03	ci left: 3.800127e-01	ci right 3.837515e-01	k: 99289	n:260000
KS ci ratio: 1.059000e-01	ci left: 4.964591e-03	ci right 5.523448e-03	k: 1362	n:260000
CDC42BPB   260000 perm   101 sec   (2570 perm/sec)   p_kst 5.238462e-03   p_cons 3.818808e-01   p_joint 1.293462e-02

Joint ci ratio: 6.725489e-02	ci left: 1.200783e-02	ci right 1.284713e-02	k: 3354	n:270000
Cons ci ratio: 9.604373e-03	ci left: 3.797264e-01	ci right 3.833947e-01	k: 103021	n:270000
KS ci ratio: 1.035688e-01	ci left: 5.004337e-03	ci right 5.554513e-03	k: 1424	n:270000
CDC42BPB   270000 perm   106 sec   (2543 perm/sec)   p_kst 5.274074e-03   p_cons 3.815593e-01   p_joint 1.242222e-02

Joint ci ratio: 6.660013e-02	ci left: 1.181422e-02	ci right 1.263164e-02	k: 3421	n:280000
Cons ci ratio: 9.432351e-03	ci left: 3.797074e-01	ci right 3.833094e-01	k: 106822	n:280000
KS ci ratio: 1.018682e-01	ci left: 4.992634e-03	ci right 5.531970e-03	k: 1472	n:280000
CDC42BPB   280000 perm   111 sec   (2516 perm/sec)   p_kst 5.257143e-03   p_cons 3.815071e-01   p_joint 1.221786e-02

Joint ci ratio: 6.663405e-02	ci left: 1.139997e-02	ci right 1.218914e-02	k: 3419	n:290000
Cons ci ratio: 9.272437e-03	ci left: 3.795283e-01	ci right 3.830672e-01	k: 110576	n:290000
KS ci ratio: 1.002487e-01	ci left: 4.981806e-03	ci right 5.510914e-03	k: 1520	n:290000
CDC42BPB   290000 perm   117 sec   (2487 perm/sec)   p_kst 5.241379e-03   p_cons 3.812966e-01   p_joint 1.178966e-02

Joint ci ratio: 6.590092e-02	ci left: 1.127236e-02	ci right 1.204379e-02	k: 3496	n:300000
Cons ci ratio: 9.120646e-03	ci left: 3.793483e-01	ci right 3.828273e-01	k: 114326	n:300000
KS ci ratio: 9.870411e-02	ci left: 4.971764e-03	ci right 5.491198e-03	k: 1568	n:300000
CDC42BPB   300000 perm   122 sec   (2460 perm/sec)   p_kst 5.226667e-03   p_cons 3.810867e-01   p_joint 1.165333e-02

Outputting figure to mutsig2_images.part000000000034/CDC42BPB.7_5284_300000_0.0052267_0.38109_0.011653.png
                gene_name: CDC42BPB
               theta_stop: 0.099 
                    nperm: 300000 
                     p_ks: 0.0052 
        ci_ks_bounds_left: 0.0050 
       ci_ks_bounds_right: 0.0055 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 22 percent done.
CDC73
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.649439e-02	ci left: 2.492482e-01	ci right 2.664931e-01	k: 2578	n:10000
Cons ci ratio: 6.007874e-02	ci left: 2.895409e-01	ci right 3.075765e-01	k: 2985	n:10000
KS ci ratio: 7.387413e-02	ci left: 2.115188e-01	ci right 2.278448e-01	k: 2196	n:10000
CDC73   10000 perm   2 sec   (5367 perm/sec)   p_kst 2.196000e-01   p_cons 2.985000e-01   p_joint 2.578000e-01

Outputting figure to mutsig2_images.part000000000034/CDC73.7_1664_10000_0.2196_0.2985_0.2578.png
                gene_name: CDC73
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 24 percent done.
CDCA7L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.075209e-02	ci left: 7.728643e-01	ci right 7.891717e-01	k: 7811	n:10000
Cons ci ratio: 6.997954e-03	ci left: 9.656240e-01	ci right 9.724991e-01	k: 9692	n:10000
KS ci ratio: 3.497592e-02	ci left: 5.468981e-01	ci right 5.664689e-01	k: 5567	n:10000
CDCA7L   10000 perm   2 sec   (5477 perm/sec)   p_kst 5.567000e-01   p_cons 9.692000e-01   p_joint 7.811000e-01

Outputting figure to mutsig2_images.part000000000034/CDCA7L.7_1405_10000_0.5567_0.9692_0.7811.png
                gene_name: CDCA7L
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 25 percent done.
CDH19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.497068e-02	ci left: 3.277341e-01	ci right 3.463609e-01	k: 3370	n:10000
Cons ci ratio: 8.757768e-02	ci left: 1.595411e-01	ci right 1.742535e-01	k: 1668	n:10000
KS ci ratio: 4.765264e-02	ci left: 3.938637e-01	ci right 4.131925e-01	k: 4035	n:10000
CDH19   10000 perm   2 sec   (5404 perm/sec)   p_kst 4.035000e-01   p_cons 1.668000e-01   p_joint 3.370000e-01

Outputting figure to mutsig2_images.part000000000034/CDH19.7_2363_10000_0.4035_0.1668_0.337.png
                gene_name: CDH19
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 27 percent done.
CDC23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.280349e-01	ci left: 2.542102e-02	ci right 3.205731e-02	k: 286	n:10000
Cons ci ratio: 4.751436e-02	ci left: 3.952579e-01	ci right 4.145975e-01	k: 4049	n:10000
KS ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
CDC23   10000 perm   2 sec   (5500 perm/sec)   p_kst 1.450000e-02   p_cons 4.049000e-01   p_joint 2.860000e-02

Joint ci ratio: 1.777090e-01	ci left: 2.163632e-02	ci right 2.590368e-02	k: 474	n:20000
Cons ci ratio: 3.433342e-02	ci left: 3.877671e-01	ci right 4.013636e-01	k: 7891	n:20000
KS ci ratio: 2.205424e-01	ci left: 1.383370e-02	ci right 1.730922e-02	k: 310	n:20000
CDC23   20000 perm   4 sec   (4892 perm/sec)   p_kst 1.550000e-02   p_cons 3.945500e-01   p_joint 2.370000e-02

Joint ci ratio: 1.402838e-01	ci left: 2.358463e-02	ci right 2.717476e-02	k: 760	n:30000
Cons ci ratio: 2.799592e-02	ci left: 3.896615e-01	ci right 4.007588e-01	k: 11856	n:30000
KS ci ratio: 1.758150e-01	ci left: 1.486554e-02	ci right 1.776256e-02	k: 488	n:30000
CDC23   30000 perm   6 sec   (4621 perm/sec)   p_kst 1.626667e-02   p_cons 3.952000e-01   p_joint 2.533333e-02

Joint ci ratio: 1.251891e-01	ci left: 2.242534e-02	ci right 2.544432e-02	k: 956	n:40000
Cons ci ratio: 2.423036e-02	ci left: 3.907035e-01	ci right 4.003116e-01	k: 15820	n:40000
KS ci ratio: 1.515535e-01	ci left: 1.520211e-02	ci right 1.771879e-02	k: 657	n:40000
CDC23   40000 perm   9 sec   (4491 perm/sec)   p_kst 1.642500e-02   p_cons 3.955000e-01   p_joint 2.390000e-02

Joint ci ratio: 1.061709e-01	ci left: 2.512918e-02	ci right 2.796615e-02	k: 1326	n:50000
Cons ci ratio: 2.169700e-02	ci left: 3.906714e-01	ci right 3.992608e-01	k: 19748	n:50000
KS ci ratio: 1.347648e-01	ci left: 1.551756e-02	ci right 1.777906e-02	k: 831	n:50000
CDC23   50000 perm   11 sec   (4376 perm/sec)   p_kst 1.662000e-02   p_cons 3.949600e-01   p_joint 2.652000e-02

Joint ci ratio: 7.620954e-02	ci left: 4.062154e-02	ci right 4.385626e-02	k: 2533	n:60000
Cons ci ratio: 1.985970e-02	ci left: 3.897709e-01	ci right 3.976060e-01	k: 23621	n:60000
KS ci ratio: 1.225496e-01	ci left: 1.573823e-02	ci right 1.780889e-02	k: 1005	n:60000
CDC23   60000 perm   14 sec   (4278 perm/sec)   p_kst 1.675000e-02   p_cons 3.936833e-01   p_joint 4.221667e-02

Joint ci ratio: 8.512960e-02	ci left: 2.814701e-02	ci right 3.066363e-02	k: 2057	n:70000
Cons ci ratio: 1.838595e-02	ci left: 3.900780e-01	ci right 3.973308e-01	k: 27559	n:70000
KS ci ratio: 1.146402e-01	ci left: 1.548595e-02	ci right 1.738301e-02	k: 1149	n:70000
CDC23   70000 perm   17 sec   (4194 perm/sec)   p_kst 1.641429e-02   p_cons 3.937000e-01   p_joint 2.938571e-02

Joint ci ratio: 8.180727e-02	ci left: 2.675745e-02	ci right 2.905196e-02	k: 2231	n:80000
Cons ci ratio: 1.724320e-02	ci left: 3.890765e-01	ci right 3.958563e-01	k: 31397	n:80000
KS ci ratio: 1.072896e-01	ci left: 1.553122e-02	ci right 1.730410e-02	k: 1312	n:80000
CDC23   80000 perm   19 sec   (4114 perm/sec)   p_kst 1.640000e-02   p_cons 3.924625e-01   p_joint 2.788750e-02

Joint ci ratio: 6.620857e-02	ci left: 3.624630e-02	ci right 3.873918e-02	k: 3373	n:90000
Cons ci ratio: 1.628046e-02	ci left: 3.885866e-01	ci right 3.949760e-01	k: 35260	n:90000
KS ci ratio: 1.012976e-01	ci left: 1.553695e-02	ci right 1.720554e-02	k: 1472	n:90000
CDC23   90000 perm   22 sec   (4035 perm/sec)   p_kst 1.635556e-02   p_cons 3.917778e-01   p_joint 3.747778e-02

Joint ci ratio: 6.947874e-02	ci left: 2.977710e-02	ci right 3.193023e-02	k: 3084	n:100000
Cons ci ratio: 1.547872e-02	ci left: 3.877141e-01	ci right 3.937722e-01	k: 39074	n:100000
KS ci ratio: 9.532270e-02	ci left: 1.583668e-02	ci right 1.743153e-02	k: 1662	n:100000
CDC23   100000 perm   25 sec   (3961 perm/sec)   p_kst 1.662000e-02   p_cons 3.907400e-01   p_joint 3.084000e-02

Outputting figure to mutsig2_images.part000000000034/CDC23.6_1858_100000_0.01662_0.39074_0.03084.png
                gene_name: CDC23
               theta_stop: 0.095 
                    nperm: 100000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 29 percent done.
CDCA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.558222e-02	ci left: 5.383830e-01	ci right 5.579889e-01	k: 5482	n:10000
KS ci ratio: 6.249646e-03	ci left: 9.720660e-01	ci right 9.782530e-01	k: 9753	n:10000
CDCA2   10000 perm   2 sec   (4984 perm/sec)   p_kst 9.753000e-01   p_cons 5.482000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CDCA2.6_3128_10000_0.9753_0.5482_1.png
                gene_name: CDCA2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
CDCP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.032327e-02	ci left: 4.759595e-01	ci right 4.956488e-01	k: 4858	n:10000
Cons ci ratio: 2.419615e-02	ci left: 7.152252e-01	ci right 7.328441e-01	k: 7241	n:10000
KS ci ratio: 6.292156e-02	ci left: 2.707198e-01	ci right 2.884088e-01	k: 2795	n:10000
CDCP2   10000 perm   2 sec   (5794 perm/sec)   p_kst 2.795000e-01   p_cons 7.241000e-01   p_joint 4.858000e-01

Outputting figure to mutsig2_images.part000000000034/CDCP2.6_1366_10000_0.2795_0.7241_0.4858.png
                gene_name: CDCP2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 32 percent done.
CDH17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.170998e-02	ci left: 2.785431e-01	ci right 2.963808e-01	k: 2874	n:10000
Cons ci ratio: 4.864673e-02	ci left: 3.840068e-01	ci right 4.032552e-01	k: 3936	n:10000
KS ci ratio: 6.780486e-02	ci left: 2.419322e-01	ci right 2.590133e-01	k: 2504	n:10000
CDH17   10000 perm   2 sec   (5141 perm/sec)   p_kst 2.504000e-01   p_cons 3.936000e-01   p_joint 2.874000e-01

Outputting figure to mutsig2_images.part000000000034/CDH17.6_2567_10000_0.2504_0.3936_0.2874.png
                gene_name: CDH17
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 34 percent done.
CD70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.506374e-02	ci left: 7.007944e-01	ci right 7.186833e-01	k: 7098	n:10000
Cons ci ratio: 4.494084e-02	ci left: 4.222622e-01	ci right 4.417774e-01	k: 4320	n:10000
KS ci ratio: 2.842204e-02	ci left: 6.459913e-01	ci right 6.647181e-01	k: 6554	n:10000
CD70   10000 perm   1 sec   (6762 perm/sec)   p_kst 6.554000e-01   p_cons 4.320000e-01   p_joint 7.098000e-01

Outputting figure to mutsig2_images.part000000000034/CD70.5_594_10000_0.6554_0.432_0.7098.png
                gene_name: CD70
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 36 percent done.
CD97
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.890621e-02	ci left: 8.034910e-01	ci right 8.189273e-01	k: 8113	n:10000
Cons ci ratio: 4.174575e-02	ci left: 4.586800e-01	ci right 4.783383e-01	k: 4685	n:10000
KS ci ratio: 1.292493e-02	ci left: 8.960051e-01	ci right 9.077596e-01	k: 9020	n:10000
CD97   10000 perm   2 sec   (5109 perm/sec)   p_kst 9.020000e-01   p_cons 4.685000e-01   p_joint 8.113000e-01

Outputting figure to mutsig2_images.part000000000034/CD97.5_2588_10000_0.902_0.4685_0.8113.png
                gene_name: CD97
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 37 percent done.
CDC25B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.183513e-02	ci left: 7.547419e-01	ci right 7.715046e-01	k: 7632	n:10000
Cons ci ratio: 2.293342e-02	ci left: 7.363367e-01	ci right 7.535204e-01	k: 7450	n:10000
KS ci ratio: 3.310124e-02	ci left: 5.739652e-01	ci right 5.933860e-01	k: 5837	n:10000
CDC25B   10000 perm   2 sec   (5436 perm/sec)   p_kst 5.837000e-01   p_cons 7.450000e-01   p_joint 7.632000e-01

Outputting figure to mutsig2_images.part000000000034/CDC25B.5_1807_10000_0.5837_0.745_0.7632.png
                gene_name: CDC25B
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 39 percent done.
CDH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.389372e-02	ci left: 3.365732e-01	ci right 3.553166e-01	k: 3459	n:10000
Cons ci ratio: 5.935524e-02	ci left: 2.945961e-01	ci right 3.127184e-01	k: 3036	n:10000
KS ci ratio: 7.049003e-02	ci left: 2.278041e-01	ci right 2.445498e-01	k: 2361	n:10000
CDH1   10000 perm   2 sec   (4569 perm/sec)   p_kst 2.361000e-01   p_cons 3.036000e-01   p_joint 3.459000e-01

Outputting figure to mutsig2_images.part000000000034/CDH1.5_2713_10000_0.2361_0.3036_0.3459.png
                gene_name: CDH1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 41 percent done.
CD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.894413e-02	ci left: 4.933506e-01	ci right 5.130475e-01	k: 5032	n:10000
Cons ci ratio: 1.221968e-01	ci left: 8.757121e-02	ci right 9.906697e-02	k: 932	n:10000
KS ci ratio: 8.215927e-03	ci left: 9.538829e-01	ci right 9.618476e-01	k: 9580	n:10000
CD5   10000 perm   2 sec   (5933 perm/sec)   p_kst 9.580000e-01   p_cons 9.320000e-02   p_joint 5.032000e-01

Joint ci ratio: 4.748411e-02	ci left: 2.480775e-01	ci right 2.601941e-01	k: 5082	n:20000
Cons ci ratio: 8.982036e-02	ci left: 8.303132e-02	ci right 9.088925e-02	k: 1738	n:20000
KS ci ratio: 5.675704e-03	ci left: 9.569850e-01	ci right 9.624803e-01	k: 19196	n:20000
CD5   20000 perm   4 sec   (5190 perm/sec)   p_kst 9.598000e-01   p_cons 8.690000e-02   p_joint 2.541000e-01

Outputting figure to mutsig2_images.part000000000034/CD5.4_1528_20000_0.9598_0.0869_0.2541.png
                gene_name: CD5
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 42 percent done.
CD55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.069396e-02	ci left: 3.646037e-01	ci right 3.836696e-01	k: 3741	n:10000
Cons ci ratio: 9.427224e-03	ci left: 9.407656e-01	ci right 9.497727e-01	k: 9454	n:10000
KS ci ratio: 9.600000e-02	ci left: 1.359974e-01	ci right 1.498113e-01	k: 1428	n:10000
CD55   10000 perm   2 sec   (5904 perm/sec)   p_kst 1.428000e-01   p_cons 9.454000e-01   p_joint 3.741000e-01

Outputting figure to mutsig2_images.part000000000034/CD55.4_1367_10000_0.1428_0.9454_0.3741.png
                gene_name: CD55
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 44 percent done.
CD5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.397380e-02	ci left: 5.612300e-01	ci right 5.807287e-01	k: 5710	n:10000
KS ci ratio: 1.689963e-02	ci left: 8.360254e-01	ci right 8.503741e-01	k: 8433	n:10000
CD5L   10000 perm   2 sec   (6453 perm/sec)   p_kst 8.433000e-01   p_cons 5.710000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CD5L.4_1068_10000_0.8433_0.571_1.png
                gene_name: CD5L
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
CD72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.453474e-01	ci left: 6.285242e-02	ci right 7.280114e-02	k: 677	n:10000
Cons ci ratio: 4.227052e-03	ci left: 9.863209e-01	ci right 9.905875e-01	k: 9886	n:10000
KS ci ratio: 3.880608e-01	ci left: 8.143597e-03	ci right 1.214950e-02	k: 100	n:10000
CD72   10000 perm   2 sec   (6063 perm/sec)   p_kst 1.000000e-02   p_cons 9.886000e-01   p_joint 6.770000e-02

Joint ci ratio: 1.505158e-01	ci left: 3.032647e-02	ci right 3.531057e-02	k: 655	n:20000
Cons ci ratio: 3.009013e-03	ci left: 9.868179e-01	ci right 9.898377e-01	k: 19768	n:20000
KS ci ratio: 2.853085e-01	ci left: 8.016427e-03	ci right 1.072909e-02	k: 186	n:20000
CD72   20000 perm   4 sec   (5348 perm/sec)   p_kst 9.300000e-03   p_cons 9.884000e-01   p_joint 3.275000e-02

Joint ci ratio: 1.000621e-01	ci left: 4.622643e-02	ci right 5.112811e-02	k: 1459	n:30000
Cons ci ratio: 2.274424e-03	ci left: 9.888439e-01	ci right 9.911264e-01	k: 29701	n:30000
KS ci ratio: 2.392788e-01	ci left: 7.805623e-03	ci right 9.957774e-03	k: 265	n:30000
CD72   30000 perm   6 sec   (5060 perm/sec)   p_kst 8.833333e-03   p_cons 9.900333e-01   p_joint 4.863333e-02

Joint ci ratio: 9.878489e-02	ci left: 3.600098e-02	ci right 3.976649e-02	k: 1514	n:40000
Cons ci ratio: 1.987087e-03	ci left: 9.888188e-01	ci right 9.908091e-01	k: 39594	n:40000
KS ci ratio: 1.985553e-01	ci left: 8.691436e-03	ci right 1.063075e-02	k: 385	n:40000
CD72   40000 perm   8 sec   (4882 perm/sec)   p_kst 9.625000e-03   p_cons 9.898500e-01   p_joint 3.785000e-02

Joint ci ratio: 1.026116e-01	ci left: 2.690291e-02	ci right 2.983219e-02	k: 1417	n:50000
Cons ci ratio: 1.800564e-03	ci left: 9.886509e-01	ci right 9.904516e-01	k: 49479	n:50000
KS ci ratio: 1.784358e-01	ci left: 8.706537e-03	ci right 1.043112e-02	k: 477	n:50000
CD72   50000 perm   11 sec   (4735 perm/sec)   p_kst 9.540000e-03   p_cons 9.895800e-01   p_joint 2.834000e-02

Joint ci ratio: 8.789948e-02	ci left: 3.067132e-02	ci right 3.350751e-02	k: 1924	n:60000
Cons ci ratio: 1.647140e-03	ci left: 9.886866e-01	ci right 9.903322e-01	k: 59372	n:60000
KS ci ratio: 1.619792e-01	ci left: 8.883233e-03	ci right 1.046474e-02	k: 579	n:60000
CD72   60000 perm   13 sec   (4617 perm/sec)   p_kst 9.650000e-03   p_cons 9.895333e-01   p_joint 3.206667e-02

Joint ci ratio: 8.422728e-02	ci left: 2.874866e-02	ci right 3.129049e-02	k: 2100	n:70000
Cons ci ratio: 1.529333e-03	ci left: 9.886875e-01	ci right 9.902143e-01	k: 69263	n:70000
KS ci ratio: 1.512862e-01	ci left: 8.780895e-03	ci right 1.023163e-02	k: 664	n:70000
CD72   70000 perm   16 sec   (4430 perm/sec)   p_kst 9.485714e-03   p_cons 9.894714e-01   p_joint 3.000000e-02

Joint ci ratio: 7.840358e-02	ci left: 2.911075e-02	ci right 3.149848e-02	k: 2423	n:80000
Cons ci ratio: 1.425907e-03	ci left: 9.888081e-01	ci right 9.902310e-01	k: 79163	n:80000
KS ci ratio: 1.418929e-01	ci left: 8.779090e-03	ci right 1.013184e-02	k: 755	n:80000
CD72   80000 perm   18 sec   (4326 perm/sec)   p_kst 9.437500e-03   p_cons 9.895375e-01   p_joint 3.028750e-02

Joint ci ratio: 6.442422e-02	ci left: 3.823676e-02	ci right 4.079303e-02	k: 3555	n:90000
Cons ci ratio: 1.389221e-03	ci left: 9.881253e-01	ci right 9.895096e-01	k: 88995	n:90000
KS ci ratio: 1.344580e-01	ci left: 8.726156e-03	ci right 9.994658e-03	k: 841	n:90000
CD72   90000 perm   21 sec   (4215 perm/sec)   p_kst 9.344444e-03   p_cons 9.888333e-01   p_joint 3.950000e-02

Joint ci ratio: 5.910737e-02	ci left: 4.088336e-02	ci right 4.338329e-02	k: 4212	n:100000
Cons ci ratio: 1.324015e-03	ci left: 9.880564e-01	ci right 9.893751e-01	k: 98873	n:100000
KS ci ratio: 1.282207e-01	ci left: 8.665931e-03	ci right 9.862792e-03	k: 925	n:100000
CD72   100000 perm   24 sec   (4144 perm/sec)   p_kst 9.250000e-03   p_cons 9.887300e-01   p_joint 4.212000e-02

Joint ci ratio: 5.882730e-02	ci left: 3.765743e-02	ci right 3.994878e-02	k: 4267	n:110000
Cons ci ratio: 1.263019e-03	ci left: 9.880764e-01	ci right 9.893340e-01	k: 108759	n:110000
KS ci ratio: 1.224115e-01	ci left: 8.670661e-03	ci right 9.809985e-03	k: 1015	n:110000
CD72   110000 perm   27 sec   (4075 perm/sec)   p_kst 9.227273e-03   p_cons 9.887182e-01   p_joint 3.879091e-02

Joint ci ratio: 5.618492e-02	ci left: 3.788698e-02	ci right 4.008537e-02	k: 4677	n:120000
Cons ci ratio: 1.212898e-03	ci left: 9.880345e-01	ci right 9.892417e-01	k: 118638	n:120000
KS ci ratio: 1.171129e-01	ci left: 8.707988e-03	ci right 9.799260e-03	k: 1109	n:120000
CD72   120000 perm   30 sec   (4009 perm/sec)   p_kst 9.241667e-03   p_cons 9.886500e-01   p_joint 3.897500e-02

Joint ci ratio: 5.501016e-02	ci left: 3.655723e-02	ci right 3.863269e-02	k: 4886	n:130000
Cons ci ratio: 1.164684e-03	ci left: 9.880711e-01	ci right 9.892300e-01	k: 128526	n:130000
KS ci ratio: 1.120725e-01	ci left: 8.800297e-03	ci right 9.852534e-03	k: 1211	n:130000
CD72   130000 perm   33 sec   (3941 perm/sec)   p_kst 9.315385e-03   p_cons 9.886615e-01   p_joint 3.758462e-02

Joint ci ratio: 5.389269e-02	ci left: 3.543206e-02	ci right 3.740149e-02	k: 5097	n:140000
Cons ci ratio: 1.126435e-03	ci left: 9.880082e-01	ci right 9.891286e-01	k: 138401	n:140000
KS ci ratio: 1.080472e-01	ci left: 8.810762e-03	ci right 9.824003e-03	k: 1303	n:140000
CD72   140000 perm   36 sec   (3878 perm/sec)   p_kst 9.307143e-03   p_cons 9.885786e-01   p_joint 3.640714e-02

Joint ci ratio: 5.303074e-02	ci left: 3.421383e-02	ci right 3.608419e-02	k: 5271	n:150000
Cons ci ratio: 1.084612e-03	ci left: 9.881045e-01	ci right 9.891832e-01	k: 148298	n:150000
KS ci ratio: 1.041634e-01	ci left: 8.865877e-03	ci right 9.846562e-03	k: 1402	n:150000
CD72   150000 perm   39 sec   (3817 perm/sec)   p_kst 9.346667e-03   p_cons 9.886533e-01   p_joint 3.514000e-02

Joint ci ratio: 5.439571e-02	ci left: 3.058169e-02	ci right 3.229785e-02	k: 5029	n:160000
Cons ci ratio: 1.101172e-03	ci left: 9.869819e-01	ci right 9.880754e-01	k: 158006	n:160000
KS ci ratio: 1.007042e-01	ci left: 8.908579e-03	ci right 9.859326e-03	k: 1500	n:160000
CD72   160000 perm   43 sec   (3758 perm/sec)   p_kst 9.375000e-03   p_cons 9.875375e-01   p_joint 3.143125e-02

Joint ci ratio: 4.792103e-02	ci left: 3.696234e-02	ci right 3.878288e-02	k: 6437	n:170000
Cons ci ratio: 9.721252e-04	ci left: 9.891665e-01	ci right 9.901343e-01	k: 168242	n:170000
KS ci ratio: 9.775355e-02	ci left: 8.912292e-03	ci right 9.833968e-03	k: 1592	n:170000
CD72   170000 perm   46 sec   (3701 perm/sec)   p_kst 9.364706e-03   p_cons 9.896588e-01   p_joint 3.786471e-02

Outputting figure to mutsig2_images.part000000000034/CD72.4_1112_170000_0.0093647_0.98966_0.037865.png
                gene_name: CD72
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.0094 
        ci_ks_bounds_left: 0.0089 
       ci_ks_bounds_right: 0.0098 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.039 

Current progress: 47 percent done.
CDADC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.220526e-01	ci left: 8.776567e-02	ci right 9.927239e-02	k: 934	n:10000
Cons ci ratio: 1.876749e-01	ci left: 3.786599e-02	ci right 4.580373e-02	k: 417	n:10000
KS ci ratio: 4.292085e-02	ci left: 4.449049e-01	ci right 4.645215e-01	k: 4547	n:10000
CDADC1   10000 perm   2 sec   (5809 perm/sec)   p_kst 4.547000e-01   p_cons 4.170000e-02   p_joint 9.340000e-02

Joint ci ratio: 6.709110e-02	ci left: 1.408865e-01	ci right 1.507167e-01	k: 2915	n:20000
Cons ci ratio: 1.367721e-01	ci left: 3.674594e-02	ci right 4.218899e-02	k: 788	n:20000
KS ci ratio: 3.066931e-02	ci left: 4.426386e-01	ci right 4.564761e-01	k: 8991	n:20000
CDADC1   20000 perm   4 sec   (5057 perm/sec)   p_kst 4.495500e-01   p_cons 3.940000e-02   p_joint 1.457500e-01

Joint ci ratio: 5.379733e-02	ci left: 1.463064e-01	ci right 1.544281e-01	k: 4510	n:30000
Cons ci ratio: 1.142364e-01	ci left: 3.560529e-02	ci right 3.995148e-02	k: 1132	n:30000
KS ci ratio: 2.485322e-02	ci left: 4.476549e-01	ci right 4.589542e-01	k: 13599	n:30000
CDADC1   30000 perm   6 sec   (4814 perm/sec)   p_kst 4.533000e-01   p_cons 3.773333e-02   p_joint 1.503333e-01

Joint ci ratio: 5.090085e-02	ci left: 1.258285e-01	ci right 1.324254e-01	k: 5164	n:40000
Cons ci ratio: 1.004506e-01	ci left: 3.482981e-02	ci right 3.853785e-02	k: 1466	n:40000
KS ci ratio: 2.159126e-02	ci left: 4.468641e-01	ci right 4.566429e-01	k: 18070	n:40000
CDADC1   40000 perm   9 sec   (4635 perm/sec)   p_kst 4.517500e-01   p_cons 3.665000e-02   p_joint 1.291000e-01

Joint ci ratio: 5.069218e-02	ci left: 1.041057e-01	ci right 1.095401e-01	k: 5340	n:50000
Cons ci ratio: 8.936017e-02	ci left: 3.540152e-02	ci right 3.873250e-02	k: 1852	n:50000
KS ci ratio: 1.932016e-02	ci left: 4.471709e-01	ci right 4.559147e-01	k: 22577	n:50000
CDADC1   50000 perm   11 sec   (4513 perm/sec)   p_kst 4.515400e-01   p_cons 3.704000e-02   p_joint 1.068000e-01

Outputting figure to mutsig2_images.part000000000034/CDADC1.4_1585_50000_0.45154_0.03704_0.1068.png
                gene_name: CDADC1
               theta_stop: 0.089 
                    nperm: 50000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 49 percent done.
CDC14A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.264705e-02	ci left: 5.806865e-01	ci right 6.000608e-01	k: 5904	n:10000
KS ci ratio: 3.782306e-02	ci left: 5.079524e-01	ci right 5.276372e-01	k: 5178	n:10000
CDC14A   10000 perm   2 sec   (5974 perm/sec)   p_kst 5.178000e-01   p_cons 5.904000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CDC14A.4_1981_10000_0.5178_0.5904_1.png
                gene_name: CDC14A
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
CDC14B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.105301e-02	ci left: 3.613218e-01	ci right 3.803535e-01	k: 3708	n:10000
Cons ci ratio: 4.182125e-02	ci left: 4.577814e-01	ci right 4.774375e-01	k: 4676	n:10000
KS ci ratio: 4.854499e-02	ci left: 3.850022e-01	ci right 4.042592e-01	k: 3946	n:10000
CDC14B   10000 perm   2 sec   (5780 perm/sec)   p_kst 3.946000e-01   p_cons 4.676000e-01   p_joint 3.708000e-01

Outputting figure to mutsig2_images.part000000000034/CDC14B.4_1606_10000_0.3946_0.4676_0.3708.png
                gene_name: CDC14B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 53 percent done.
CDC16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.908557e-02	ci left: 6.354296e-01	ci right 6.542860e-01	k: 6449	n:10000
Cons ci ratio: 2.680273e-02	ci left: 6.721660e-01	ci right 6.905282e-01	k: 6814	n:10000
KS ci ratio: 4.068814e-02	ci left: 4.714637e-01	ci right 4.911472e-01	k: 4813	n:10000
CDC16   10000 perm   2 sec   (5788 perm/sec)   p_kst 4.813000e-01   p_cons 6.814000e-01   p_joint 6.449000e-01

Outputting figure to mutsig2_images.part000000000034/CDC16.4_1935_10000_0.4813_0.6814_0.6449.png
                gene_name: CDC16
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 54 percent done.
CDC20B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.185929e-02	ci left: 7.543371e-01	ci right 7.711095e-01	k: 7628	n:10000
Cons ci ratio: 6.152973e-02	ci left: 2.797318e-01	ci right 2.975915e-01	k: 2886	n:10000
KS ci ratio: 2.019297e-02	ci left: 7.821871e-01	ci right 7.982435e-01	k: 7903	n:10000
CDC20B   10000 perm   2 sec   (5760 perm/sec)   p_kst 7.903000e-01   p_cons 2.886000e-01   p_joint 7.628000e-01

Outputting figure to mutsig2_images.part000000000034/CDC20B.4_1608_10000_0.7903_0.2886_0.7628.png
                gene_name: CDC20B
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 56 percent done.
CDC25C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.340871e-02	ci left: 4.393171e-01	ci right 4.589126e-01	k: 4491	n:10000
Cons ci ratio: 5.248318e-02	ci left: 3.485962e-01	ci right 3.674866e-01	k: 3580	n:10000
KS ci ratio: 4.489509e-02	ci left: 4.227607e-01	ci right 4.422786e-01	k: 4325	n:10000
CDC25C   10000 perm   2 sec   (6645 perm/sec)   p_kst 4.325000e-01   p_cons 3.580000e-01   p_joint 4.491000e-01

Outputting figure to mutsig2_images.part000000000034/CDC25C.4_1474_10000_0.4325_0.358_0.4491.png
                gene_name: CDC25C
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 58 percent done.
CDC40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.575464e-02	ci left: 3.214794e-01	ci right 3.400192e-01	k: 3307	n:10000
Cons ci ratio: 1.420057e-01	ci left: 6.575174e-02	ci right 7.590000e-02	k: 707	n:10000
KS ci ratio: 9.222915e-02	ci left: 1.458981e-01	ci right 1.601047e-01	k: 1529	n:10000
CDC40   10000 perm   2 sec   (5713 perm/sec)   p_kst 1.529000e-01   p_cons 7.070000e-02   p_joint 3.307000e-01

Joint ci ratio: 7.910556e-02	ci left: 1.050078e-01	ci right 1.137062e-01	k: 2186	n:20000
Cons ci ratio: 1.004917e-01	ci left: 6.713637e-02	ci right 7.428904e-02	k: 1413	n:20000
KS ci ratio: 6.461960e-02	ci left: 1.503551e-01	ci right 1.604453e-01	k: 3107	n:20000
CDC40   20000 perm   4 sec   (5057 perm/sec)   p_kst 1.553500e-01   p_cons 7.065000e-02   p_joint 1.093000e-01

Joint ci ratio: 5.934592e-02	ci left: 1.231859e-01	ci right 1.307532e-01	k: 3808	n:30000
Cons ci ratio: 8.293876e-02	ci left: 6.641864e-02	ci right 7.219844e-02	k: 2078	n:30000
KS ci ratio: 5.300447e-02	ci left: 1.500974e-01	ci right 1.583030e-01	k: 4625	n:30000
CDC40   30000 perm   6 sec   (4811 perm/sec)   p_kst 1.541667e-01   p_cons 6.926667e-02   p_joint 1.269333e-01

Outputting figure to mutsig2_images.part000000000034/CDC40.4_1800_30000_0.15417_0.069267_0.12693.png
                gene_name: CDC40
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 59 percent done.
CDCA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.072783e-02	ci left: 7.732695e-01	ci right 7.895662e-01	k: 7815	n:10000
Cons ci ratio: 1.719903e-02	ci left: 8.312409e-01	ci right 8.457613e-01	k: 8386	n:10000
KS ci ratio: 3.509652e-02	ci left: 5.451948e-01	ci right 5.647731e-01	k: 5550	n:10000
CDCA3   10000 perm   2 sec   (6240 perm/sec)   p_kst 5.550000e-01   p_cons 8.386000e-01   p_joint 7.815000e-01

Outputting figure to mutsig2_images.part000000000034/CDCA3.4_827_10000_0.555_0.8386_0.7815.png
                gene_name: CDCA3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 61 percent done.
CD44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.369703e-01	ci left: 7.049285e-02	ci right 8.095591e-02	k: 756	n:10000
Cons ci ratio: 1.504075e-01	ci left: 5.879809e-02	ci right 6.845803e-02	k: 635	n:10000
KS ci ratio: 1.196672e-01	ci left: 9.107270e-02	ci right 1.027633e-01	k: 968	n:10000
CD44   10000 perm   2 sec   (5496 perm/sec)   p_kst 9.680000e-02   p_cons 6.350000e-02   p_joint 7.560000e-02

Joint ci ratio: 1.135882e-01	ci left: 5.299920e-02	ci right 5.943059e-02	k: 1123	n:20000
Cons ci ratio: 1.077194e-01	ci left: 5.874541e-02	ci right 6.548259e-02	k: 1241	n:20000
KS ci ratio: 8.244601e-02	ci left: 9.734785e-02	ci right 1.057684e-01	k: 2030	n:20000
CD44   20000 perm   4 sec   (4893 perm/sec)   p_kst 1.015000e-01   p_cons 6.205000e-02   p_joint 5.615000e-02

Joint ci ratio: 9.013996e-02	ci left: 5.662084e-02	ci right 6.199823e-02	k: 1778	n:30000
Cons ci ratio: 8.281044e-02	ci left: 6.661478e-02	ci right 7.240226e-02	k: 2084	n:30000
KS ci ratio: 6.687233e-02	ci left: 9.931964e-02	ci right 1.062242e-01	k: 3082	n:30000
CD44   30000 perm   6 sec   (4675 perm/sec)   p_kst 1.027333e-01   p_cons 6.946667e-02   p_joint 5.926667e-02

Outputting figure to mutsig2_images.part000000000034/CD44.3_2301_30000_0.10273_0.069467_0.059267.png
                gene_name: CD44
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.062 

Current progress: 63 percent done.
CD46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.292085e-02	ci left: 4.449049e-01	ci right 4.645215e-01	k: 4547	n:10000
Cons ci ratio: 8.263127e-02	ci left: 1.760548e-01	ci right 1.913299e-01	k: 1836	n:10000
KS ci ratio: 4.173737e-02	ci left: 4.587799e-01	ci right 4.784384e-01	k: 4686	n:10000
CD46   10000 perm   2 sec   (6340 perm/sec)   p_kst 4.686000e-01   p_cons 1.836000e-01   p_joint 4.547000e-01

Outputting figure to mutsig2_images.part000000000034/CD46.3_1312_10000_0.4686_0.1836_0.4547.png
                gene_name: CD46
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 64 percent done.
CD47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.733220e-02	ci left: 8.291039e-01	ci right 8.436996e-01	k: 8365	n:10000
KS ci ratio: 3.219686e-02	ci left: 5.874096e-01	ci right 6.067338e-01	k: 5971	n:10000
CD47   10000 perm   1 sec   (7155 perm/sec)   p_kst 5.971000e-01   p_cons 8.365000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CD47.3_1020_10000_0.5971_0.8365_1.png
                gene_name: CD47
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
CD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.717994e-02	ci left: 6.660222e-01	ci right 6.844756e-01	k: 6753	n:10000
KS ci ratio: 6.915738e-03	ci left: 9.663613e-01	ci right 9.731614e-01	k: 9699	n:10000
CD6   10000 perm   2 sec   (5559 perm/sec)   p_kst 9.699000e-01   p_cons 6.753000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CD6.3_2059_10000_0.9699_0.6753_1.png
                gene_name: CD6
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
CD63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.585987e-01	ci left: 3.541199e-03	ci right 6.359123e-03	k: 48	n:10000
Cons ci ratio: 2.705609e-02	ci left: 6.680363e-01	ci right 6.864603e-01	k: 6773	n:10000
KS ci ratio: 6.614075e-01	ci left: 2.355713e-03	ci right 4.747948e-03	k: 34	n:10000
CD63   10000 perm   2 sec   (6500 perm/sec)   p_kst 3.400000e-03   p_cons 6.773000e-01   p_joint 4.800000e-03

Joint ci ratio: 2.807961e-01	ci left: 8.295294e-03	ci right 1.105008e-02	k: 192	n:20000
Cons ci ratio: 1.920445e-02	ci left: 6.691120e-01	ci right 6.821369e-01	k: 13513	n:20000
KS ci ratio: 4.930829e-01	ci left: 2.377553e-03	ci right 3.972323e-03	k: 62	n:20000
CD63   20000 perm   4 sec   (5663 perm/sec)   p_kst 3.100000e-03   p_cons 6.756500e-01   p_joint 9.600000e-03

Joint ci ratio: 2.033636e-01	ci left: 1.098852e-02	ci right 1.350727e-02	k: 366	n:30000
Cons ci ratio: 1.570858e-02	ci left: 6.695326e-01	ci right 6.801668e-01	k: 20246	n:30000
KS ci ratio: 4.036765e-01	ci left: 2.502807e-03	ci right 3.796384e-03	k: 93	n:30000
CD63   30000 perm   6 sec   (5367 perm/sec)   p_kst 3.100000e-03   p_cons 6.748667e-01   p_joint 1.220000e-02

Joint ci ratio: 1.957580e-01	ci left: 8.952977e-03	ci right 1.091915e-02	k: 396	n:40000
Cons ci ratio: 1.357364e-02	ci left: 6.712380e-01	ci right 6.804365e-01	k: 27034	n:40000
KS ci ratio: 3.432433e-01	ci left: 2.693205e-03	ci right 3.830801e-03	k: 129	n:40000
CD63   40000 perm   8 sec   (5172 perm/sec)   p_kst 3.225000e-03   p_cons 6.758500e-01   p_joint 9.900000e-03

Joint ci ratio: 1.488548e-01	ci left: 1.266089e-02	ci right 1.471615e-02	k: 683	n:50000
Cons ci ratio: 1.252129e-02	ci left: 6.580150e-01	ci right 6.663261e-01	k: 33109	n:50000
KS ci ratio: 3.123554e-01	ci left: 2.650208e-03	ci right 3.648858e-03	k: 156	n:50000
CD63   50000 perm   10 sec   (5022 perm/sec)   p_kst 3.120000e-03   p_cons 6.621800e-01   p_joint 1.366000e-02

Joint ci ratio: 1.899223e-01	ci left: 6.380249e-03	ci right 7.734757e-03	k: 422	n:60000
Cons ci ratio: 1.140813e-02	ci left: 6.592518e-01	ci right 6.668324e-01	k: 39783	n:60000
KS ci ratio: 2.862094e-01	ci left: 2.671036e-03	ci right 3.578081e-03	k: 186	n:60000
CD63   60000 perm   12 sec   (4898 perm/sec)   p_kst 3.100000e-03   p_cons 6.630500e-01   p_joint 7.033333e-03

Joint ci ratio: 1.927895e-01	ci left: 5.305278e-03	ci right 6.450550e-03	k: 410	n:70000
Cons ci ratio: 1.055700e-02	ci left: 6.597423e-01	ci right 6.667584e-01	k: 46428	n:70000
KS ci ratio: 2.727152e-01	ci left: 2.541851e-03	ci right 3.357359e-03	k: 205	n:70000
CD63   70000 perm   15 sec   (4771 perm/sec)   p_kst 2.928571e-03   p_cons 6.632571e-01   p_joint 5.857143e-03

Joint ci ratio: 1.785713e-01	ci left: 5.452693e-03	ci right 6.533605e-03	k: 478	n:80000
Cons ci ratio: 9.844960e-03	ci left: 6.613413e-01	ci right 6.678968e-01	k: 53170	n:80000
KS ci ratio: 2.516042e-01	ci left: 2.644610e-03	ci right 3.417128e-03	k: 241	n:80000
CD63   80000 perm   17 sec   (4647 perm/sec)   p_kst 3.012500e-03   p_cons 6.646250e-01   p_joint 5.975000e-03

Joint ci ratio: 1.652817e-01	ci left: 5.697583e-03	ci right 6.734630e-03	k: 558	n:90000
Cons ci ratio: 9.006186e-03	ci left: 6.748693e-01	ci right 6.809859e-01	k: 61014	n:90000
KS ci ratio: 2.347413e-01	ci left: 2.726431e-03	ci right 3.461731e-03	k: 277	n:90000
CD63   90000 perm   20 sec   (4532 perm/sec)   p_kst 3.077778e-03   p_cons 6.779333e-01   p_joint 6.200000e-03

Joint ci ratio: 1.553113e-01	ci left: 5.838195e-03	ci right 6.830766e-03	k: 632	n:100000
Cons ci ratio: 8.526682e-03	ci left: 6.759158e-01	ci right 6.817138e-01	k: 67882	n:100000
KS ci ratio: 2.205177e-01	ci left: 2.802719e-03	ci right 3.506587e-03	k: 314	n:100000
CD63   100000 perm   23 sec   (4433 perm/sec)   p_kst 3.140000e-03   p_cons 6.788200e-01   p_joint 6.320000e-03

Joint ci ratio: 1.510937e-01	ci left: 5.622129e-03	ci right 6.549657e-03	k: 668	n:110000
Cons ci ratio: 8.118388e-03	ci left: 6.766692e-01	ci right 6.821941e-01	k: 74738	n:110000
KS ci ratio: 2.113289e-01	ci left: 2.788709e-03	ci right 3.456096e-03	k: 342	n:110000
CD63   110000 perm   25 sec   (4343 perm/sec)   p_kst 3.109091e-03   p_cons 6.794364e-01   p_joint 6.072727e-03

Joint ci ratio: 1.907129e-01	ci left: 3.173740e-03	ci right 3.850604e-03	k: 420	n:120000
Cons ci ratio: 7.780853e-03	ci left: 6.763334e-01	ci right 6.816247e-01	k: 81478	n:120000
KS ci ratio: 2.034758e-01	ci left: 2.769631e-03	ci right 3.404760e-03	k: 369	n:120000
CD63   120000 perm   28 sec   (4254 perm/sec)   p_kst 3.075000e-03   p_cons 6.789833e-01   p_joint 3.500000e-03

Joint ci ratio: 1.880685e-01	ci left: 3.017513e-03	ci right 3.651114e-03	k: 432	n:130000
Cons ci ratio: 7.477166e-03	ci left: 6.763464e-01	ci right 6.814302e-01	k: 88256	n:130000
KS ci ratio: 1.971865e-01	ci left: 2.731933e-03	ci right 3.336725e-03	k: 393	n:130000
CD63   130000 perm   31 sec   (4176 perm/sec)   p_kst 3.023077e-03   p_cons 6.788923e-01   p_joint 3.323077e-03

Joint ci ratio: 1.375918e-01	ci left: 5.367527e-03	ci right 6.167437e-03	k: 806	n:140000
Cons ci ratio: 7.198208e-03	ci left: 6.768621e-01	ci right 6.817590e-01	k: 95104	n:140000
KS ci ratio: 1.900829e-01	ci left: 2.740696e-03	ci right 3.323046e-03	k: 423	n:140000
CD63   140000 perm   34 sec   (4103 perm/sec)   p_kst 3.021429e-03   p_cons 6.793143e-01   p_joint 5.757143e-03

Joint ci ratio: 1.373619e-01	ci left: 5.028943e-03	ci right 5.777037e-03	k: 809	n:150000
Cons ci ratio: 6.960106e-03	ci left: 6.765705e-01	ci right 6.813026e-01	k: 101841	n:150000
KS ci ratio: 1.843073e-01	ci left: 2.729547e-03	ci right 3.289937e-03	k: 450	n:150000
CD63   150000 perm   37 sec   (4032 perm/sec)   p_kst 3.000000e-03   p_cons 6.789400e-01   p_joint 5.393333e-03

Joint ci ratio: 1.693511e-01	ci left: 3.054821e-03	ci right 3.625910e-03	k: 533	n:160000
Cons ci ratio: 6.740680e-03	ci left: 6.765433e-01	ci right 6.811252e-01	k: 108614	n:160000
KS ci ratio: 1.777275e-01	ci left: 2.761828e-03	ci right 3.306427e-03	k: 484	n:160000
CD63   160000 perm   40 sec   (3964 perm/sec)   p_kst 3.025000e-03   p_cons 6.788375e-01   p_joint 3.331250e-03

Joint ci ratio: 1.640592e-01	ci left: 3.072422e-03	ci right 3.627082e-03	k: 568	n:170000
Cons ci ratio: 6.542014e-03	ci left: 6.764388e-01	ci right 6.808845e-01	k: 115373	n:170000
KS ci ratio: 1.733194e-01	ci left: 2.739963e-03	ci right 3.265448e-03	k: 509	n:170000
CD63   170000 perm   44 sec   (3902 perm/sec)   p_kst 2.994118e-03   p_cons 6.786647e-01   p_joint 3.341176e-03

Joint ci ratio: 1.581866e-01	ci left: 3.130998e-03	ci right 3.674079e-03	k: 611	n:180000
Cons ci ratio: 6.360664e-03	ci left: 6.762978e-01	ci right 6.806187e-01	k: 122123	n:180000
KS ci ratio: 1.687500e-01	ci left: 2.736640e-03	ci right 3.246242e-03	k: 537	n:180000
CD63   180000 perm   47 sec   (3839 perm/sec)   p_kst 2.983333e-03   p_cons 6.784611e-01   p_joint 3.394444e-03

Joint ci ratio: 1.543275e-01	ci left: 3.122986e-03	ci right 3.650240e-03	k: 642	n:190000
Cons ci ratio: 6.192033e-03	ci left: 6.762839e-01	ci right 6.804896e-01	k: 128894	n:190000
KS ci ratio: 1.640883e-01	ci left: 2.748971e-03	ci right 3.245333e-03	k: 568	n:190000
CD63   190000 perm   50 sec   (3777 perm/sec)   p_kst 2.989474e-03   p_cons 6.783895e-01   p_joint 3.378947e-03

Joint ci ratio: 1.505138e-01	ci left: 3.125544e-03	ci right 3.639016e-03	k: 675	n:200000
Cons ci ratio: 6.031023e-03	ci left: 6.766433e-01	ci right 6.807415e-01	k: 135739	n:200000
KS ci ratio: 1.600605e-01	ci left: 2.750642e-03	ci right 3.233942e-03	k: 597	n:200000
CD63   200000 perm   54 sec   (3719 perm/sec)   p_kst 2.985000e-03   p_cons 6.786950e-01   p_joint 3.375000e-03

Joint ci ratio: 1.391161e-01	ci left: 3.504561e-03	ci right 4.033091e-03	k: 790	n:210000
Cons ci ratio: 5.885224e-03	ci left: 6.767265e-01	ci right 6.807257e-01	k: 142533	n:210000
KS ci ratio: 1.632510e-01	ci left: 2.514540e-03	ci right 2.966026e-03	k: 574	n:210000
CD63   210000 perm   57 sec   (3664 perm/sec)   p_kst 2.733333e-03   p_cons 6.787286e-01   p_joint 3.761905e-03

Joint ci ratio: 1.076111e-01	ci left: 5.672697e-03	ci right 6.322240e-03	k: 1318	n:220000
Cons ci ratio: 5.752868e-03	ci left: 6.765483e-01	ci right 6.804561e-01	k: 149271	n:220000
KS ci ratio: 1.583655e-01	ci left: 2.557300e-03	ci right 3.001416e-03	k: 610	n:220000
CD63   220000 perm   61 sec   (3608 perm/sec)   p_kst 2.772727e-03   p_cons 6.785045e-01   p_joint 5.990909e-03

Joint ci ratio: 1.238157e-01	ci left: 4.070383e-03	ci right 4.611790e-03	k: 997	n:230000
Cons ci ratio: 5.793979e-03	ci left: 6.636372e-01	ci right 6.674978e-01	k: 153081	n:230000
KS ci ratio: 1.542529e-01	ci left: 2.583982e-03	ci right 3.020002e-03	k: 643	n:230000
CD63   230000 perm   65 sec   (3545 perm/sec)   p_kst 2.795652e-03   p_cons 6.655696e-01   p_joint 4.334783e-03

Joint ci ratio: 1.207664e-01	ci left: 4.106788e-03	ci right 4.638624e-03	k: 1048	n:240000
Cons ci ratio: 5.672821e-03	ci left: 6.636125e-01	ci right 6.673919e-01	k: 159721	n:240000
KS ci ratio: 1.503336e-01	ci left: 2.612588e-03	ci right 3.041226e-03	k: 677	n:240000
CD63   240000 perm   69 sec   (3491 perm/sec)   p_kst 2.820833e-03   p_cons 6.655042e-01   p_joint 4.366667e-03

Joint ci ratio: 1.260765e-01	ci left: 3.609074e-03	ci right 4.098539e-03	k: 962	n:250000
Cons ci ratio: 5.555912e-03	ci left: 6.638349e-01	ci right 6.675373e-01	k: 166422	n:250000
KS ci ratio: 1.473224e-01	ci left: 2.615914e-03	ci right 3.035744e-03	k: 705	n:250000
CD63   250000 perm   73 sec   (3436 perm/sec)   p_kst 2.820000e-03   p_cons 6.656880e-01   p_joint 3.848000e-03

Joint ci ratio: 1.238468e-01	ci left: 3.600669e-03	ci right 4.079726e-03	k: 997	n:260000
Cons ci ratio: 5.442414e-03	ci left: 6.643297e-01	ci right 6.679589e-01	k: 173198	n:260000
KS ci ratio: 1.442882e-01	ci left: 2.626478e-03	ci right 3.038575e-03	k: 735	n:260000
CD63   260000 perm   77 sec   (3389 perm/sec)   p_kst 2.826923e-03   p_cons 6.661462e-01   p_joint 3.834615e-03

Joint ci ratio: 1.217906e-01	ci left: 3.589367e-03	ci right 4.058420e-03	k: 1031	n:270000
Cons ci ratio: 5.340121e-03	ci left: 6.644102e-01	ci right 6.679714e-01	k: 179872	n:270000
KS ci ratio: 1.418992e-01	ci left: 2.618478e-03	ci right 3.021941e-03	k: 760	n:270000
CD63   270000 perm   81 sec   (3343 perm/sec)   p_kst 2.814815e-03   p_cons 6.661926e-01   p_joint 3.818519e-03

Joint ci ratio: 1.194964e-01	ci left: 3.599723e-03	ci right 4.060641e-03	k: 1071	n:280000
Cons ci ratio: 5.244229e-03	ci left: 6.644141e-01	ci right 6.679111e-01	k: 186526	n:280000
KS ci ratio: 1.390938e-01	ci left: 2.631785e-03	ci right 3.028617e-03	k: 791	n:280000
CD63   280000 perm   85 sec   (3299 perm/sec)   p_kst 2.825000e-03   p_cons 6.661643e-01   p_joint 3.825000e-03

Joint ci ratio: 1.175396e-01	ci left: 3.596052e-03	ci right 4.048436e-03	k: 1107	n:290000
Cons ci ratio: 5.155721e-03	ci left: 6.642110e-01	ci right 6.676477e-01	k: 193120	n:290000
KS ci ratio: 1.367821e-01	ci left: 2.630924e-03	ci right 3.020496e-03	k: 818	n:290000
CD63   290000 perm   89 sec   (3255 perm/sec)   p_kst 2.820690e-03   p_cons 6.659310e-01   p_joint 3.817241e-03

Joint ci ratio: 1.014030e-01	ci left: 4.705236e-03	ci right 5.211066e-03	k: 1486	n:300000
Cons ci ratio: 5.071469e-03	ci left: 6.640287e-01	ci right 6.674081e-01	k: 199716	n:300000
KS ci ratio: 1.345023e-01	ci left: 2.633393e-03	ci right 3.016312e-03	k: 846	n:300000
CD63   300000 perm   93 sec   (3213 perm/sec)   p_kst 2.820000e-03   p_cons 6.657200e-01   p_joint 4.953333e-03

Joint ci ratio: 1.001666e-01	ci left: 4.669797e-03	ci right 5.165335e-03	k: 1523	n:310000
Cons ci ratio: 4.987887e-03	ci left: 6.641557e-01	ci right 6.674799e-01	k: 206404	n:310000
KS ci ratio: 1.329437e-01	ci left: 2.610800e-03	ci right 2.985687e-03	k: 866	n:310000
CD63   310000 perm   98 sec   (3171 perm/sec)   p_kst 2.793548e-03   p_cons 6.658194e-01   p_joint 4.912903e-03

Joint ci ratio: 1.001083e-01	ci left: 4.529943e-03	ci right 5.010344e-03	k: 1525	n:320000
Cons ci ratio: 4.909236e-03	ci left: 6.641907e-01	ci right 6.674625e-01	k: 213065	n:320000
KS ci ratio: 1.306282e-01	ci left: 2.622895e-03	ci right 2.992450e-03	k: 897	n:320000
CD63   320000 perm   102 sec   (3130 perm/sec)   p_kst 2.803125e-03   p_cons 6.658281e-01   p_joint 4.765625e-03

Joint ci ratio: 9.869611e-02	ci left: 4.522689e-03	ci right 4.995163e-03	k: 1569	n:330000
Cons ci ratio: 4.832876e-03	ci left: 6.643454e-01	ci right 6.675668e-01	k: 219766	n:330000
KS ci ratio: 1.287777e-01	ci left: 2.619645e-03	ci right 2.983113e-03	k: 923	n:330000
CD63   330000 perm   107 sec   (3089 perm/sec)   p_kst 2.796970e-03   p_cons 6.659576e-01   p_joint 4.754545e-03

Joint ci ratio: 1.010580e-01	ci left: 4.183156e-03	ci right 4.631238e-03	k: 1497	n:340000
Cons ci ratio: 4.763244e-03	ci left: 6.641851e-01	ci right 6.673592e-01	k: 226363	n:340000
KS ci ratio: 1.272726e-01	ci left: 2.605229e-03	ci right 2.962153e-03	k: 945	n:340000
CD63   340000 perm   111 sec   (3050 perm/sec)   p_kst 2.779412e-03   p_cons 6.657735e-01   p_joint 4.402941e-03

Joint ci ratio: 1.047445e-01	ci left: 3.776881e-03	ci right 4.197111e-03	k: 1394	n:350000
Cons ci ratio: 4.695028e-03	ci left: 6.641772e-01	ci right 6.673057e-01	k: 233010	n:350000
KS ci ratio: 1.258190e-01	ci left: 2.591660e-03	ci right 2.942368e-03	k: 967	n:350000
CD63   350000 perm   116 sec   (3011 perm/sec)   p_kst 2.762857e-03   p_cons 6.657429e-01   p_joint 3.982857e-03

Joint ci ratio: 1.031301e-01	ci left: 3.791014e-03	ci right 4.205921e-03	k: 1438	n:360000
Cons ci ratio: 4.628044e-03	ci left: 6.643259e-01	ci right 6.674103e-01	k: 239713	n:360000
KS ci ratio: 1.236030e-01	ci left: 2.613860e-03	ci right 2.960887e-03	k: 1002	n:360000
CD63   360000 perm   121 sec   (2973 perm/sec)   p_kst 2.783333e-03   p_cons 6.658694e-01   p_joint 3.994444e-03

Joint ci ratio: 1.013141e-01	ci left: 3.825506e-03	ci right 4.236376e-03	k: 1490	n:370000
Cons ci ratio: 4.566619e-03	ci left: 6.641963e-01	ci right 6.672390e-01	k: 246316	n:370000
KS ci ratio: 1.214415e-01	ci left: 2.637533e-03	ci right 2.981138e-03	k: 1038	n:370000
CD63   370000 perm   126 sec   (2936 perm/sec)   p_kst 2.805405e-03   p_cons 6.657189e-01   p_joint 4.027027e-03

Joint ci ratio: 1.000147e-01	ci left: 3.824882e-03	ci right 4.230107e-03	k: 1529	n:380000
Cons ci ratio: 4.503979e-03	ci left: 6.644294e-01	ci right 6.674313e-01	k: 253054	n:380000
KS ci ratio: 1.199503e-01	ci left: 2.634479e-03	ci right 2.973173e-03	k: 1064	n:380000
CD63   380000 perm   131 sec   (2900 perm/sec)   p_kst 2.800000e-03   p_cons 6.659316e-01   p_joint 4.023684e-03

Joint ci ratio: 9.832453e-02	ci left: 3.859338e-03	ci right 4.260906e-03	k: 1582	n:390000
Cons ci ratio: 4.444050e-03	ci left: 6.646302e-01	ci right 6.675930e-01	k: 259784	n:390000
KS ci ratio: 1.177574e-01	ci left: 2.666446e-03	ci right 3.002547e-03	k: 1104	n:390000
CD63   390000 perm   136 sec   (2864 perm/sec)   p_kst 2.830769e-03   p_cons 6.661128e-01   p_joint 4.056410e-03

Joint ci ratio: 9.656918e-02	ci left: 3.904325e-03	ci right 4.302911e-03	k: 1640	n:400000
Cons ci ratio: 4.387855e-03	ci left: 6.646786e-01	ci right 6.676040e-01	k: 266457	n:400000
KS ci ratio: 1.153275e-01	ci left: 2.713863e-03	ci right 3.048402e-03	k: 1151	n:400000
CD63   400000 perm   141 sec   (2832 perm/sec)   p_kst 2.877500e-03   p_cons 6.661425e-01   p_joint 4.100000e-03

Joint ci ratio: 9.544195e-02	ci left: 3.901936e-03	ci right 4.295367e-03	k: 1679	n:410000
Cons ci ratio: 4.332979e-03	ci left: 6.648030e-01	ci right 6.676922e-01	k: 273162	n:410000
KS ci ratio: 1.139996e-01	ci left: 2.711636e-03	ci right 3.041793e-03	k: 1178	n:410000
CD63   410000 perm   146 sec   (2799 perm/sec)   p_kst 2.873171e-03   p_cons 6.662488e-01   p_joint 4.095122e-03

Joint ci ratio: 9.427072e-02	ci left: 3.906661e-03	ci right 4.295468e-03	k: 1721	n:420000
Cons ci ratio: 4.281944e-03	ci left: 6.647310e-01	ci right 6.675858e-01	k: 279787	n:420000
KS ci ratio: 1.127165e-01	ci left: 2.709536e-03	ci right 3.035477e-03	k: 1205	n:420000
CD63   420000 perm   152 sec   (2767 perm/sec)   p_kst 2.869048e-03   p_cons 6.661595e-01   p_joint 4.097619e-03

Joint ci ratio: 9.189449e-02	ci left: 4.020249e-03	ci right 4.409734e-03	k: 1811	n:430000
Cons ci ratio: 4.230968e-03	ci left: 6.648418e-01	ci right 6.676630e-01	k: 286489	n:430000
KS ci ratio: 1.112047e-01	ci left: 2.721120e-03	ci right 3.043776e-03	k: 1238	n:430000
CD63   430000 perm   157 sec   (2736 perm/sec)   p_kst 2.879070e-03   p_cons 6.662535e-01   p_joint 4.211628e-03

Joint ci ratio: 9.102039e-02	ci left: 4.006605e-03	ci right 4.390879e-03	k: 1846	n:440000
Cons ci ratio: 4.182004e-03	ci left: 6.649227e-01	ci right 6.677115e-01	k: 293180	n:440000
KS ci ratio: 1.101000e-01	ci left: 2.714521e-03	ci right 3.032990e-03	k: 1263	n:440000
CD63   440000 perm   163 sec   (2706 perm/sec)   p_kst 2.870455e-03   p_cons 6.663182e-01   p_joint 4.195455e-03

Joint ci ratio: 9.002676e-02	ci left: 4.006617e-03	ci right 4.386477e-03	k: 1887	n:450000
Cons ci ratio: 4.135652e-03	ci left: 6.648979e-01	ci right 6.676555e-01	k: 299825	n:450000
KS ci ratio: 1.088161e-01	ci left: 2.719040e-03	ci right 3.034081e-03	k: 1293	n:450000
CD63   450000 perm   168 sec   (2672 perm/sec)   p_kst 2.873333e-03   p_cons 6.662778e-01   p_joint 4.193333e-03

Joint ci ratio: 8.672570e-02	ci left: 4.229916e-03	ci right 4.615497e-03	k: 2033	n:460000
Cons ci ratio: 4.090828e-03	ci left: 6.648721e-01	ci right 6.675997e-01	k: 306469	n:460000
KS ci ratio: 1.079858e-01	ci left: 2.702229e-03	ci right 3.012781e-03	k: 1313	n:460000
CD63   460000 perm   174 sec   (2643 perm/sec)   p_kst 2.854348e-03   p_cons 6.662370e-01   p_joint 4.419565e-03

Joint ci ratio: 7.659049e-02	ci left: 5.330205e-03	ci right 5.756776e-03	k: 2604	n:470000
Cons ci ratio: 4.047314e-03	ci left: 6.648604e-01	ci right 6.675588e-01	k: 313119	n:470000
KS ci ratio: 1.066544e-01	ci left: 2.713063e-03	ci right 3.020775e-03	k: 1346	n:470000
CD63   470000 perm   180 sec   (2614 perm/sec)   p_kst 2.863830e-03   p_cons 6.662106e-01   p_joint 5.540426e-03

Joint ci ratio: 7.988322e-02	ci left: 4.792204e-03	ci right 5.192974e-03	k: 2395	n:480000
Cons ci ratio: 4.005066e-03	ci left: 6.648597e-01	ci right 6.675299e-01	k: 319774	n:480000
KS ci ratio: 1.054860e-01	ci left: 2.717384e-03	ci right 3.022000e-03	k: 1376	n:480000
CD63   480000 perm   186 sec   (2586 perm/sec)   p_kst 2.866667e-03   p_cons 6.661958e-01   p_joint 4.989583e-03

Joint ci ratio: 8.656672e-02	ci left: 3.986893e-03	ci right 4.349621e-03	k: 2041	n:490000
Cons ci ratio: 3.962914e-03	ci left: 6.649941e-01	ci right 6.676366e-01	k: 326495	n:490000
KS ci ratio: 1.044297e-01	ci left: 2.717570e-03	ci right 3.018969e-03	k: 1404	n:490000
CD63   490000 perm   192 sec   (2558 perm/sec)   p_kst 2.865306e-03   p_cons 6.663163e-01   p_joint 4.165306e-03

Joint ci ratio: 8.534110e-02	ci left: 4.022622e-03	ci right 4.383160e-03	k: 2100	n:500000
Cons ci ratio: 3.923370e-03	ci left: 6.649750e-01	ci right 6.675911e-01	k: 333142	n:500000
KS ci ratio: 1.030803e-01	ci left: 2.735299e-03	ci right 3.034507e-03	k: 1441	n:500000
CD63   500000 perm   198 sec   (2531 perm/sec)   p_kst 2.882000e-03   p_cons 6.662840e-01   p_joint 4.200000e-03

Joint ci ratio: 8.444134e-02	ci left: 4.030110e-03	ci right 4.387323e-03	k: 2145	n:510000
Cons ci ratio: 3.883530e-03	ci left: 6.651237e-01	ci right 6.677136e-01	k: 339874	n:510000
KS ci ratio: 1.021986e-01	ci left: 2.729427e-03	ci right 3.025285e-03	k: 1466	n:510000
CD63   510000 perm   204 sec   (2506 perm/sec)   p_kst 2.874510e-03   p_cons 6.664196e-01   p_joint 4.205882e-03

Joint ci ratio: 7.548350e-02	ci left: 4.964798e-03	ci right 5.356131e-03	k: 2682	n:520000
Cons ci ratio: 3.844930e-03	ci left: 6.652610e-01	ci right 6.678256e-01	k: 346603	n:520000
KS ci ratio: 1.011354e-01	ci left: 2.735038e-03	ci right 3.028237e-03	k: 1497	n:520000
CD63   520000 perm   210 sec   (2481 perm/sec)   p_kst 2.878846e-03   p_cons 6.665442e-01   p_joint 5.157692e-03

Joint ci ratio: 7.799568e-02	ci left: 4.558335e-03	ci right 4.930129e-03	k: 2513	n:530000
Cons ci ratio: 3.808265e-03	ci left: 6.652987e-01	ci right 6.678391e-01	k: 353282	n:530000
KS ci ratio: 1.003353e-01	ci left: 2.727575e-03	ci right 3.017525e-03	k: 1521	n:530000
CD63   530000 perm   216 sec   (2455 perm/sec)   p_kst 2.869811e-03   p_cons 6.665698e-01   p_joint 4.741509e-03

Joint ci ratio: 7.736782e-02	ci left: 4.548372e-03	ci right 4.916232e-03	k: 2554	n:540000
Cons ci ratio: 3.772441e-03	ci left: 6.653575e-01	ci right 6.678741e-01	k: 359973	n:540000
KS ci ratio: 9.942501e-02	ci left: 2.727621e-03	ci right 3.014791e-03	k: 1549	n:540000
CD63   540000 perm   222 sec   (2430 perm/sec)   p_kst 2.868519e-03   p_cons 6.666167e-01   p_joint 4.729630e-03

Outputting figure to mutsig2_images.part000000000034/CD63.3_745_540000_0.0028685_0.66662_0.0047296.png
                gene_name: CD63
               theta_stop: 0.099 
                    nperm: 540000 
                     p_ks: 0.0029 
        ci_ks_bounds_left: 0.0027 
       ci_ks_bounds_right: 0.0030 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.0047 
     ci_joint_bounds_left: 0.0045 
    ci_joint_bounds_right: 0.0049 

Current progress: 69 percent done.
CD79A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.433266e-02	ci left: 4.289432e-01	ci right 4.484926e-01	k: 4387	n:10000
Cons ci ratio: 2.067321e-02	ci left: 7.741813e-01	ci right 7.904539e-01	k: 7824	n:10000
KS ci ratio: 5.900626e-02	ci left: 2.970746e-01	ci right 3.152384e-01	k: 3061	n:10000
CD79A   10000 perm   1 sec   (6899 perm/sec)   p_kst 3.061000e-01   p_cons 7.824000e-01   p_joint 4.387000e-01

Outputting figure to mutsig2_images.part000000000034/CD79A.3_701_10000_0.3061_0.7824_0.4387.png
                gene_name: CD79A
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 71 percent done.
CD84
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.809187e-03	ci left: 9.755703e-01	ci right 9.813463e-01	k: 9786	n:10000
Cons ci ratio: 4.261065e-02	ci left: 4.484977e-01	ci right 4.681266e-01	k: 4583	n:10000
KS ci ratio: 2.274638e-02	ci left: 7.394702e-01	ci right 7.565851e-01	k: 7481	n:10000
CD84   10000 perm   2 sec   (5895 perm/sec)   p_kst 7.481000e-01   p_cons 4.583000e-01   p_joint 9.786000e-01

Outputting figure to mutsig2_images.part000000000034/CD84.3_1070_10000_0.7481_0.4583_0.9786.png
                gene_name: CD84
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 73 percent done.
CD96
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.766434e-02	ci left: 5.100533e-01	ci right 5.297351e-01	k: 5199	n:10000
Cons ci ratio: 6.225664e-02	ci left: 2.749777e-01	ci right 2.927484e-01	k: 2838	n:10000
KS ci ratio: 3.689460e-02	ci left: 5.203605e-01	ci right 5.400219e-01	k: 5302	n:10000
CD96   10000 perm   2 sec   (6061 perm/sec)   p_kst 5.302000e-01   p_cons 2.838000e-01   p_joint 5.199000e-01

Outputting figure to mutsig2_images.part000000000034/CD96.3_1818_10000_0.5302_0.2838_0.5199.png
                gene_name: CD96
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 75 percent done.
CDAN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.138976e-01	ci left: 9.983694e-02	ci right 1.119937e-01	k: 1058	n:10000
Cons ci ratio: 2.052170e-01	ci left: 3.157898e-02	ci right 3.889501e-02	k: 351	n:10000
KS ci ratio: 2.306014e-02	ci left: 7.342143e-01	ci right 7.514440e-01	k: 7429	n:10000
CDAN1   10000 perm   2 sec   (5047 perm/sec)   p_kst 7.429000e-01   p_cons 3.510000e-02   p_joint 1.058000e-01

Joint ci ratio: 8.253650e-02	ci left: 9.715154e-02	ci right 1.055648e-01	k: 2026	n:20000
Cons ci ratio: 1.384243e-01	ci left: 3.587580e-02	ci right 4.125942e-02	k: 770	n:20000
KS ci ratio: 1.645130e-02	ci left: 7.333576e-01	ci right 7.455727e-01	k: 14790	n:20000
CDAN1   20000 perm   5 sec   (4423 perm/sec)   p_kst 7.395000e-01   p_cons 3.850000e-02   p_joint 1.013000e-01

Joint ci ratio: 4.603241e-02	ci left: 1.901662e-01	ci right 1.991596e-01	k: 5839	n:30000
Cons ci ratio: 1.126948e-01	ci left: 3.657794e-02	ci right 4.097862e-02	k: 1162	n:30000
KS ci ratio: 1.340693e-02	ci left: 7.352315e-01	ci right 7.451886e-01	k: 22207	n:30000
CDAN1   30000 perm   7 sec   (4179 perm/sec)   p_kst 7.402333e-01   p_cons 3.873333e-02   p_joint 1.946333e-01

Joint ci ratio: 4.672569e-02	ci left: 1.461176e-01	ci right 1.531333e-01	k: 5984	n:40000
Cons ci ratio: 9.755333e-02	ci left: 3.690411e-02	ci right 4.071322e-02	k: 1551	n:40000
KS ci ratio: 1.161705e-02	ci left: 7.356968e-01	ci right 7.443184e-01	k: 29601	n:40000
CDAN1   40000 perm   10 sec   (3990 perm/sec)   p_kst 7.400250e-01   p_cons 3.877500e-02   p_joint 1.496000e-01

Outputting figure to mutsig2_images.part000000000034/CDAN1.3_3796_40000_0.74003_0.038775_0.1496.png
                gene_name: CDAN1
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 76 percent done.
CDC20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.019629e-02	ci left: 9.317489e-01	ci right 9.413948e-01	k: 9367	n:10000
Cons ci ratio: 2.258349e-02	ci left: 7.421999e-01	ci right 7.592538e-01	k: 7508	n:10000
KS ci ratio: 3.151877e-02	ci left: 5.976484e-01	ci right 6.168891e-01	k: 6073	n:10000
CDC20   10000 perm   2 sec   (5707 perm/sec)   p_kst 6.073000e-01   p_cons 7.508000e-01   p_joint 9.367000e-01

Outputting figure to mutsig2_images.part000000000034/CDC20.3_1540_10000_0.6073_0.7508_0.9367.png
                gene_name: CDC20
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 78 percent done.
CDC42BPG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.219901e-02	ci left: 3.510811e-01	ci right 3.700002e-01	k: 3605	n:10000
Cons ci ratio: 6.626932e-02	ci left: 2.505337e-01	ci right 2.678068e-01	k: 2591	n:10000
KS ci ratio: 9.408775e-02	ci left: 1.408974e-01	ci right 1.549084e-01	k: 1478	n:10000
CDC42BPG   10000 perm   2 sec   (4769 perm/sec)   p_kst 1.478000e-01   p_cons 2.591000e-01   p_joint 3.605000e-01

Outputting figure to mutsig2_images.part000000000034/CDC42BPG.3_4804_10000_0.1478_0.2591_0.3605.png
                gene_name: CDC42BPG
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 80 percent done.
CDC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.904114e-02	ci left: 6.361335e-01	ci right 6.549816e-01	k: 6456	n:10000
KS ci ratio: 2.089762e-02	ci left: 7.704332e-01	ci right 7.868042e-01	k: 7787	n:10000
CDC7   10000 perm   2 sec   (6081 perm/sec)   p_kst 7.787000e-01   p_cons 6.456000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CDC7.3_1769_10000_0.7787_0.6456_1.png
                gene_name: CDC7
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
CDCA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.269655e-02	ci left: 4.474996e-01	ci right 4.671253e-01	k: 4573	n:10000
Cons ci ratio: 6.670348e-02	ci left: 2.480616e-01	ci right 2.652804e-01	k: 2566	n:10000
KS ci ratio: 5.072644e-02	ci left: 3.643054e-01	ci right 3.833682e-01	k: 3738	n:10000
CDCA8   10000 perm   2 sec   (6375 perm/sec)   p_kst 3.738000e-01   p_cons 2.566000e-01   p_joint 4.573000e-01

Outputting figure to mutsig2_images.part000000000034/CDCA8.3_883_10000_0.3738_0.2566_0.4573.png
                gene_name: CDCA8
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 83 percent done.
CD53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.395232e-03	ci left: 9.786643e-01	ci right 9.840501e-01	k: 9815	n:10000
Cons ci ratio: 3.678368e-02	ci left: 5.218619e-01	ci right 5.415197e-01	k: 5317	n:10000
KS ci ratio: 2.036337e-02	ci left: 7.793491e-01	ci right 7.954831e-01	k: 7875	n:10000
CD53   10000 perm   1 sec   (6740 perm/sec)   p_kst 7.875000e-01   p_cons 5.317000e-01   p_joint 9.815000e-01

Outputting figure to mutsig2_images.part000000000034/CD53.2_688_10000_0.7875_0.5317_0.9815.png
                gene_name: CD53
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 85 percent done.
CD58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.124744e-02	ci left: 9.186317e-01	ci right 9.291198e-01	k: 9240	n:10000
KS ci ratio: 8.092922e-03	ci left: 9.551367e-01	ci right 9.629931e-01	k: 9592	n:10000
CD58   10000 perm   1 sec   (7250 perm/sec)   p_kst 9.592000e-01   p_cons 9.240000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CD58.2_781_10000_0.9592_0.924_1.png
                gene_name: CD58
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
CD8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.461602e-02	ci left: 5.520085e-01	ci right 5.715555e-01	k: 5618	n:10000
KS ci ratio: 1.257135e-02	ci left: 9.009330e-01	ci right 9.124288e-01	k: 9068	n:10000
CD8B   10000 perm   2 sec   (6624 perm/sec)   p_kst 9.068000e-01   p_cons 5.618000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CD8B.2_931_10000_0.9068_0.5618_1.png
                gene_name: CD8B
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
CDC25A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.685211e-02	ci left: 6.713602e-01	ci right 6.897345e-01	k: 6806	n:10000
Cons ci ratio: 6.567074e-02	ci left: 2.539954e-01	ci right 2.713431e-01	k: 2626	n:10000
KS ci ratio: 2.888270e-02	ci left: 6.386479e-01	ci right 6.574658e-01	k: 6481	n:10000
CDC25A   10000 perm   2 sec   (6255 perm/sec)   p_kst 6.481000e-01   p_cons 2.626000e-01   p_joint 6.806000e-01

Outputting figure to mutsig2_images.part000000000034/CDC25A.2_1635_10000_0.6481_0.2626_0.6806.png
                gene_name: CDC25A
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 90 percent done.
CDC42EP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.812237e-01	ci left: 2.189796e-03	ci right 4.514469e-03	k: 32	n:10000
Cons ci ratio: 8.703178e-03	ci left: 9.487722e-01	ci right 9.571614e-01	k: 9531	n:10000
KS ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
CDC42EP1   10000 perm   1 sec   (6997 perm/sec)   p_kst 4.000000e-04   p_cons 9.531000e-01   p_joint 3.200000e-03

Joint ci ratio: 2.334606e-01	ci left: 1.227629e-02	ci right 1.556726e-02	k: 277	n:20000
Cons ci ratio: 6.068484e-03	ci left: 9.513140e-01	ci right 9.571530e-01	k: 19086	n:20000
KS ci ratio: 1.011735e+00	ci left: 3.827477e-04	ci right 1.174202e-03	k: 14	n:20000
CDC42EP1   20000 perm   3 sec   (6007 perm/sec)   p_kst 7.000000e-04   p_cons 9.543000e-01   p_joint 1.385000e-02

Joint ci ratio: 4.614141e-01	ci left: 1.848835e-03	ci right 2.984304e-03	k: 71	n:30000
Cons ci ratio: 4.997522e-03	ci left: 9.510905e-01	ci right 9.558879e-01	k: 28606	n:30000
KS ci ratio: 8.551005e-01	ci left: 4.072634e-04	ci right 1.029426e-03	k: 20	n:30000
CDC42EP1   30000 perm   5 sec   (5689 perm/sec)   p_kst 6.666667e-04   p_cons 9.535333e-01   p_joint 2.366667e-03

Joint ci ratio: 7.837452e-01	ci left: 3.844680e-04	ci right 8.926218e-04	k: 24	n:40000
Cons ci ratio: 4.522232e-03	ci left: 9.472832e-01	ci right 9.516012e-01	k: 37979	n:40000
KS ci ratio: 6.926788e-01	ci left: 5.266337e-04	ci right 1.099872e-03	k: 31	n:40000
CDC42EP1   40000 perm   7 sec   (5449 perm/sec)   p_kst 7.750000e-04   p_cons 9.494750e-01   p_joint 6.000000e-04

Joint ci ratio: 3.733423e-01	ci left: 1.790338e-03	ci right 2.629137e-03	k: 109	n:50000
Cons ci ratio: 4.041065e-03	ci left: 9.476055e-01	ci right 9.514621e-01	k: 47478	n:50000
KS ci ratio: 6.046090e-01	ci left: 5.885084e-04	ci right 1.112260e-03	k: 41	n:50000
CDC42EP1   50000 perm   9 sec   (5277 perm/sec)   p_kst 8.200000e-04   p_cons 9.495600e-01   p_joint 2.180000e-03

Joint ci ratio: 2.767212e-01	ci left: 2.872454e-03	ci right 3.809937e-03	k: 199	n:60000
Cons ci ratio: 3.699513e-03	ci left: 9.474975e-01	ci right 9.510256e-01	k: 56957	n:60000
KS ci ratio: 5.655722e-01	ci left: 5.756189e-04	ci right 1.041533e-03	k: 47	n:60000
CDC42EP1   60000 perm   12 sec   (5130 perm/sec)   p_kst 7.833333e-04   p_cons 9.492833e-01   p_joint 3.316667e-03

Joint ci ratio: 1.264498e-01	ci left: 1.268585e-02	ci right 1.441197e-02	k: 947	n:70000
Cons ci ratio: 3.411196e-03	ci left: 9.480260e-01	ci right 9.512795e-01	k: 66477	n:70000
KS ci ratio: 4.859869e-01	ci left: 7.041804e-04	ci right 1.167375e-03	k: 64	n:70000
CDC42EP1   70000 perm   14 sec   (5001 perm/sec)   p_kst 9.142857e-04   p_cons 9.496714e-01   p_joint 1.352857e-02

Joint ci ratio: 2.225685e-01	ci left: 3.432690e-03	ci right 4.303897e-03	k: 308	n:80000
Cons ci ratio: 3.205292e-03	ci left: 9.476938e-01	ci right 9.507486e-01	k: 75939	n:80000
KS ci ratio: 4.554771e-01	ci left: 7.153204e-04	ci right 1.147197e-03	k: 73	n:80000
CDC42EP1   80000 perm   16 sec   (4879 perm/sec)   p_kst 9.125000e-04   p_cons 9.492375e-01   p_joint 3.850000e-03

Joint ci ratio: 1.115581e-01	ci left: 1.277782e-02	ci right 1.429822e-02	k: 1217	n:90000
Cons ci ratio: 3.029732e-03	ci left: 9.475314e-01	ci right 9.504174e-01	k: 85409	n:90000
KS ci ratio: 4.353571e-01	ci left: 7.048946e-04	ci right 1.106179e-03	k: 80	n:90000
CDC42EP1   90000 perm   19 sec   (4768 perm/sec)   p_kst 8.888889e-04   p_cons 9.489889e-01   p_joint 1.352222e-02

Joint ci ratio: 1.063256e-01	ci left: 1.269650e-02	ci right 1.413193e-02	k: 1340	n:100000
Cons ci ratio: 2.870634e-03	ci left: 9.477298e-01	ci right 9.504641e-01	k: 94911	n:100000
KS ci ratio: 4.153321e-01	ci left: 7.058437e-04	ci right 1.084074e-03	k: 88	n:100000
CDC42EP1   100000 perm   21 sec   (4663 perm/sec)   p_kst 8.800000e-04   p_cons 9.491100e-01   p_joint 1.340000e-02

Joint ci ratio: 1.197058e-01	ci left: 9.076291e-03	ci right 1.024069e-02	k: 1061	n:110000
Cons ci ratio: 2.740395e-03	ci left: 9.476743e-01	ci right 9.502838e-01	k: 104389	n:110000
KS ci ratio: 3.999069e-01	ci left: 6.987878e-04	ci right 1.055649e-03	k: 95	n:110000
CDC42EP1   110000 perm   24 sec   (4568 perm/sec)   p_kst 8.636364e-04   p_cons 9.489909e-01   p_joint 9.645455e-03

Joint ci ratio: 9.604436e-02	ci left: 1.303364e-02	ci right 1.435668e-02	k: 1642	n:120000
Cons ci ratio: 2.624144e-03	ci left: 9.477149e-01	ci right 9.502133e-01	k: 113877	n:120000
KS ci ratio: 3.842194e-01	ci left: 7.006518e-04	ci right 1.040884e-03	k: 103	n:120000
CDC42EP1   120000 perm   27 sec   (4478 perm/sec)   p_kst 8.583333e-04   p_cons 9.489750e-01   p_joint 1.368333e-02

Joint ci ratio: 9.211700e-02	ci left: 1.310520e-02	ci right 1.437817e-02	k: 1785	n:130000
Cons ci ratio: 2.515522e-03	ci left: 9.479846e-01	ci right 9.503799e-01	k: 123395	n:130000
KS ci ratio: 3.686009e-01	ci left: 7.094394e-04	ci right 1.036564e-03	k: 112	n:130000
CDC42EP1   130000 perm   30 sec   (4381 perm/sec)   p_kst 8.615385e-04   p_cons 9.491923e-01   p_joint 1.373077e-02

Joint ci ratio: 1.780576e-01	ci left: 3.142782e-03	ci right 3.763779e-03	k: 482	n:140000
Cons ci ratio: 2.427940e-03	ci left: 9.478708e-01	ci right 9.501820e-01	k: 132865	n:140000
KS ci ratio: 3.532979e-01	ci left: 7.237197e-04	ci right 1.040399e-03	k: 122	n:140000
CDC42EP1   140000 perm   33 sec   (4298 perm/sec)   p_kst 8.714286e-04   p_cons 9.490357e-01   p_joint 3.442857e-03

Joint ci ratio: 1.717704e-01	ci left: 3.162760e-03	ci right 3.763352e-03	k: 518	n:150000
Cons ci ratio: 2.345500e-03	ci left: 9.479150e-01	ci right 9.501476e-01	k: 142356	n:150000
KS ci ratio: 3.436566e-01	ci left: 7.180541e-04	ci right 1.021775e-03	k: 129	n:150000
CDC42EP1   150000 perm   36 sec   (4221 perm/sec)   p_kst 8.600000e-04   p_cons 9.490400e-01   p_joint 3.453333e-03

Joint ci ratio: 1.693511e-01	ci left: 3.054821e-03	ci right 3.625910e-03	k: 533	n:160000
Cons ci ratio: 2.270632e-03	ci left: 9.479676e-01	ci right 9.501286e-01	k: 151849	n:160000
KS ci ratio: 3.323446e-01	ci left: 7.246534e-04	ci right 1.018919e-03	k: 138	n:160000
CDC42EP1   160000 perm   39 sec   (4146 perm/sec)   p_kst 8.625000e-04   p_cons 9.490563e-01   p_joint 3.331250e-03

Joint ci ratio: 1.634837e-01	ci left: 3.094990e-03	ci right 3.651571e-03	k: 572	n:170000
Cons ci ratio: 2.199688e-03	ci left: 9.481396e-01	ci right 9.502333e-01	k: 161363	n:170000
KS ci ratio: 3.199245e-01	ci left: 7.414382e-04	ci right 1.028964e-03	k: 149	n:170000
CDC42EP1   170000 perm   42 sec   (4074 perm/sec)   p_kst 8.764706e-04   p_cons 9.491941e-01   p_joint 3.364706e-03

Joint ci ratio: 1.588390e-01	ci left: 3.104319e-03	ci right 3.645204e-03	k: 606	n:180000
Cons ci ratio: 2.142005e-03	ci left: 9.479736e-01	ci right 9.500119e-01	k: 170820	n:180000
KS ci ratio: 3.107380e-01	ci left: 7.462916e-04	ci right 1.025742e-03	k: 158	n:180000
CDC42EP1   180000 perm   45 sec   (4005 perm/sec)   p_kst 8.777778e-04   p_cons 9.490000e-01   p_joint 3.366667e-03

Joint ci ratio: 1.530197e-01	ci left: 3.178661e-03	ci right 3.710351e-03	k: 653	n:190000
Cons ci ratio: 2.088382e-03	ci left: 9.478366e-01	ci right 9.498233e-01	k: 180279	n:190000
KS ci ratio: 2.996342e-01	ci left: 7.653376e-04	ci right 1.039732e-03	k: 170	n:190000
CDC42EP1   190000 perm   48 sec   (3939 perm/sec)   p_kst 8.947368e-04   p_cons 9.488368e-01   p_joint 3.436842e-03

Joint ci ratio: 1.488656e-01	ci left: 3.197744e-03	ci right 3.716812e-03	k: 690	n:200000
Cons ci ratio: 2.035327e-03	ci left: 9.478704e-01	ci right 9.498065e-01	k: 189769	n:200000
KS ci ratio: 2.888525e-01	ci left: 7.872762e-04	ci right 1.057526e-03	k: 183	n:200000
CDC42EP1   200000 perm   52 sec   (3874 perm/sec)   p_kst 9.150000e-04   p_cons 9.488450e-01   p_joint 3.450000e-03

Joint ci ratio: 1.443378e-01	ci left: 3.247316e-03	ci right 3.757017e-03	k: 734	n:210000
Cons ci ratio: 1.983587e-03	ci left: 9.480265e-01	ci right 9.499135e-01	k: 199285	n:210000
KS ci ratio: 2.813089e-01	ci left: 7.940024e-04	ci right 1.058182e-03	k: 193	n:210000
CDC42EP1   210000 perm   55 sec   (3812 perm/sec)   p_kst 9.190476e-04   p_cons 9.489762e-01   p_joint 3.495238e-03

Joint ci ratio: 1.673982e-01	ci left: 2.278212e-03	ci right 2.698704e-03	k: 546	n:220000
Cons ci ratio: 1.938320e-03	ci left: 9.480312e-01	ci right 9.498751e-01	k: 208771	n:220000
KS ci ratio: 2.743270e-01	ci left: 8.002004e-04	ci right 1.058695e-03	k: 203	n:220000
CDC42EP1   220000 perm   59 sec   (3749 perm/sec)   p_kst 9.227273e-04   p_cons 9.489591e-01   p_joint 2.481818e-03

Joint ci ratio: 1.365643e-01	ci left: 3.325732e-03	ci right 3.817344e-03	k: 820	n:230000
Cons ci ratio: 1.897803e-03	ci left: 9.479440e-01	ci right 9.497490e-01	k: 218236	n:230000
KS ci ratio: 2.691020e-01	ci left: 7.978222e-04	ci right 1.049811e-03	k: 211	n:230000
CDC42EP1   230000 perm   62 sec   (3690 perm/sec)   p_kst 9.173913e-04   p_cons 9.488522e-01   p_joint 3.565217e-03

Joint ci ratio: 1.594337e-01	ci left: 2.312160e-03	ci right 2.716671e-03	k: 602	n:240000
Cons ci ratio: 1.856129e-03	ci left: 9.480535e-01	ci right 9.498190e-01	k: 227746	n:240000
KS ci ratio: 2.659861e-01	ci left: 7.840149e-04	ci right 1.028298e-03	k: 216	n:240000
CDC42EP1   240000 perm   66 sec   (3632 perm/sec)   p_kst 9.000000e-04   p_cons 9.489417e-01   p_joint 2.508333e-03

Joint ci ratio: 1.554852e-01	ci left: 2.338790e-03	ci right 2.736882e-03	k: 633	n:250000
Cons ci ratio: 1.819106e-03	ci left: 9.480457e-01	ci right 9.497758e-01	k: 237229	n:250000
KS ci ratio: 2.589217e-01	ci left: 7.974978e-04	ci right 1.038315e-03	k: 228	n:250000
CDC42EP1   250000 perm   70 sec   (3575 perm/sec)   p_kst 9.120000e-04   p_cons 9.489160e-01   p_joint 2.532000e-03

Joint ci ratio: 1.522761e-01	ci left: 2.348685e-03	ci right 2.739458e-03	k: 660	n:260000
Cons ci ratio: 1.782233e-03	ci left: 9.481474e-01	ci right 9.498425e-01	k: 246740	n:260000
KS ci ratio: 2.566922e-01	ci left: 7.812144e-04	ci right 1.014758e-03	k: 232	n:260000
CDC42EP1   260000 perm   74 sec   (3523 perm/sec)   p_kst 8.923077e-04   p_cons 9.490000e-01   p_joint 2.538462e-03

Joint ci ratio: 1.499146e-01	ci left: 2.336533e-03	ci right 2.718715e-03	k: 681	n:270000
Cons ci ratio: 1.749049e-03	ci left: 9.481560e-01	ci right 9.498195e-01	k: 256228	n:270000
KS ci ratio: 2.529220e-01	ci left: 7.765507e-04	ci right 1.004753e-03	k: 239	n:270000
CDC42EP1   270000 perm   78 sec   (3468 perm/sec)   p_kst 8.851852e-04   p_cons 9.489926e-01   p_joint 2.522222e-03

Joint ci ratio: 1.478706e-01	ci left: 2.318413e-03	ci right 2.692003e-03	k: 700	n:280000
Cons ci ratio: 1.718729e-03	ci left: 9.481031e-01	ci right 9.497376e-01	k: 265699	n:280000
KS ci ratio: 2.508425e-01	ci left: 7.621999e-04	ci right 9.840552e-04	k: 243	n:280000
CDC42EP1   280000 perm   82 sec   (3415 perm/sec)   p_kst 8.678571e-04   p_cons 9.489250e-01   p_joint 2.500000e-03

Joint ci ratio: 1.458066e-01	ci left: 2.304898e-03	ci right 2.670674e-03	k: 720	n:290000
Cons ci ratio: 1.688789e-03	ci left: 9.481201e-01	ci right 9.497261e-01	k: 275189	n:290000
KS ci ratio: 2.488134e-01	ci left: 7.488461e-04	ci right 9.647782e-04	k: 247	n:290000
CDC42EP1   290000 perm   86 sec   (3367 perm/sec)   p_kst 8.517241e-04   p_cons 9.489276e-01   p_joint 2.482759e-03

Joint ci ratio: 2.047763e-01	ci left: 1.095101e-03	ci right 1.348026e-03	k: 365	n:300000
Cons ci ratio: 1.660932e-03	ci left: 9.481027e-01	ci right 9.496820e-01	k: 284669	n:300000
KS ci ratio: 2.453752e-01	ci left: 7.457730e-04	ci right 9.573944e-04	k: 254	n:300000
CDC42EP1   300000 perm   90 sec   (3319 perm/sec)   p_kst 8.466667e-04   p_cons 9.488967e-01   p_joint 1.216667e-03

Joint ci ratio: 2.023051e-01	ci left: 1.087327e-03	ci right 1.335052e-03	k: 374	n:310000
Cons ci ratio: 1.633648e-03	ci left: 9.481320e-01	ci right 9.496854e-01	k: 294163	n:310000
KS ci ratio: 2.430057e-01	ci left: 7.368575e-04	ci right 9.436254e-04	k: 259	n:310000
CDC42EP1   310000 perm   95 sec   (3274 perm/sec)   p_kst 8.354839e-04   p_cons 9.489129e-01   p_joint 1.206452e-03

Joint ci ratio: 8.317264e-02	ci left: 6.606919e-03	ci right 7.183316e-03	k: 2205	n:320000
Cons ci ratio: 1.577167e-03	ci left: 9.499978e-01	ci right 9.515003e-01	k: 304241	n:320000
KS ci ratio: 2.380218e-01	ci left: 7.461348e-04	ci right 9.505790e-04	k: 270	n:320000
CDC42EP1   320000 perm   99 sec   (3228 perm/sec)   p_kst 8.437500e-04   p_cons 9.507531e-01   p_joint 6.890625e-03

Joint ci ratio: 8.193790e-02	ci left: 6.605548e-03	ci right 7.172861e-03	k: 2272	n:330000
Cons ci ratio: 1.552408e-03	ci left: 9.500505e-01	ci right 9.515295e-01	k: 313762	n:330000
KS ci ratio: 2.358572e-01	ci left: 7.377764e-04	ci right 9.378235e-04	k: 275	n:330000
CDC42EP1   330000 perm   104 sec   (3184 perm/sec)   p_kst 8.333333e-04   p_cons 9.507939e-01   p_joint 6.884848e-03

Joint ci ratio: 8.082616e-02	ci left: 6.592788e-03	ci right 7.150961e-03	k: 2335	n:340000
Cons ci ratio: 1.529068e-03	ci left: 9.500825e-01	ci right 9.515392e-01	k: 323277	n:340000
KS ci ratio: 2.321031e-01	ci left: 7.409962e-04	ci right 9.382597e-04	k: 284	n:340000
CDC42EP1   340000 perm   108 sec   (3142 perm/sec)   p_kst 8.352941e-04   p_cons 9.508147e-01   p_joint 6.867647e-03

Joint ci ratio: 7.945887e-02	ci left: 6.631218e-03	ci right 7.182708e-03	k: 2416	n:350000
Cons ci ratio: 1.506657e-03	ci left: 9.501186e-01	ci right 9.515540e-01	k: 332794	n:350000
KS ci ratio: 2.251003e-01	ci left: 7.683103e-04	ci right 9.658187e-04	k: 302	n:350000
CDC42EP1   350000 perm   113 sec   (3099 perm/sec)   p_kst 8.628571e-04   p_cons 9.508400e-01   p_joint 6.902857e-03

Joint ci ratio: 1.140253e-01	ci left: 3.085588e-03	ci right 3.461367e-03	k: 1177	n:360000
Cons ci ratio: 1.484452e-03	ci left: 9.502003e-01	ci right 9.516146e-01	k: 342328	n:360000
KS ci ratio: 2.229050e-01	ci left: 7.626996e-04	ci right 9.565910e-04	k: 308	n:360000
CDC42EP1   360000 perm   118 sec   (3061 perm/sec)   p_kst 8.555556e-04   p_cons 9.509111e-01   p_joint 3.269444e-03

Joint ci ratio: 7.742067e-02	ci left: 6.614582e-03	ci right 7.149941e-03	k: 2545	n:370000
Cons ci ratio: 1.465149e-03	ci left: 9.501526e-01	ci right 9.515484e-01	k: 351816	n:370000
KS ci ratio: 2.204227e-01	ci left: 7.599546e-04	ci right 9.507050e-04	k: 315	n:370000
CDC42EP1   370000 perm   122 sec   (3022 perm/sec)   p_kst 8.513514e-04   p_cons 9.508541e-01   p_joint 6.878378e-03

Joint ci ratio: 1.139866e-01	ci left: 2.925731e-03	ci right 3.281913e-03	k: 1178	n:380000
Cons ci ratio: 1.445885e-03	ci left: 9.501526e-01	ci right 9.515300e-01	k: 361321	n:380000
KS ci ratio: 2.163521e-01	ci left: 7.698080e-04	ci right 9.589894e-04	k: 327	n:380000
CDC42EP1   380000 perm   127 sec   (2983 perm/sec)   p_kst 8.605263e-04   p_cons 9.508447e-01   p_joint 3.100000e-03

Joint ci ratio: 7.544652e-02	ci left: 6.614911e-03	ci right 7.136046e-03	k: 2680	n:390000
Cons ci ratio: 1.428301e-03	ci left: 9.500908e-01	ci right 9.514513e-01	k: 370802	n:390000
KS ci ratio: 2.134435e-01	ci left: 7.719044e-04	ci right 9.587168e-04	k: 336	n:390000
CDC42EP1   390000 perm   132 sec   (2947 perm/sec)   p_kst 8.615385e-04   p_cons 9.507744e-01   p_joint 6.871795e-03

Joint ci ratio: 7.457594e-02	ci left: 6.604083e-03	ci right 7.118100e-03	k: 2743	n:400000
Cons ci ratio: 1.409872e-03	ci left: 9.501302e-01	ci right 9.514732e-01	k: 380322	n:400000
KS ci ratio: 2.121891e-01	ci left: 7.620734e-04	ci right 9.452817e-04	k: 340	n:400000
CDC42EP1   400000 perm   137 sec   (2912 perm/sec)   p_kst 8.500000e-04   p_cons 9.508050e-01   p_joint 6.857500e-03

Joint ci ratio: 7.353723e-02	ci left: 6.629731e-03	ci right 7.138251e-03	k: 2821	n:410000
Cons ci ratio: 1.393082e-03	ci left: 9.501041e-01	ci right 9.514310e-01	k: 389816	n:410000
KS ci ratio: 2.085505e-01	ci left: 7.712131e-04	ci right 9.530335e-04	k: 352	n:410000
CDC42EP1   410000 perm   142 sec   (2878 perm/sec)   p_kst 8.585366e-04   p_cons 9.507707e-01   p_joint 6.880488e-03

Joint ci ratio: 7.271770e-02	ci left: 6.621474e-03	ci right 7.123461e-03	k: 2885	n:420000
Cons ci ratio: 1.376316e-03	ci left: 9.501176e-01	ci right 9.514285e-01	k: 399326	n:420000
KS ci ratio: 2.070899e-01	ci left: 7.641358e-04	ci right 9.428660e-04	k: 357	n:420000
CDC42EP1   420000 perm   148 sec   (2844 perm/sec)   p_kst 8.500000e-04   p_cons 9.507762e-01   p_joint 6.869048e-03

Joint ci ratio: 7.206037e-02	ci left: 6.588507e-03	ci right 7.083290e-03	k: 2938	n:430000
Cons ci ratio: 1.359737e-03	ci left: 9.501587e-01	ci right 9.514538e-01	k: 408848	n:430000
KS ci ratio: 2.050948e-01	ci left: 7.618041e-04	ci right 9.380571e-04	k: 364	n:430000
CDC42EP1   430000 perm   153 sec   (2811 perm/sec)   p_kst 8.465116e-04   p_cons 9.508093e-01   p_joint 6.832558e-03

Joint ci ratio: 7.128872e-02	ci left: 6.581615e-03	ci right 7.070368e-03	k: 3002	n:440000
Cons ci ratio: 1.344721e-03	ci left: 9.501294e-01	ci right 9.514101e-01	k: 418340	n:440000
KS ci ratio: 2.010047e-01	ci left: 7.768487e-04	ci right 9.525586e-04	k: 379	n:440000
CDC42EP1   440000 perm   158 sec   (2777 perm/sec)   p_kst 8.613636e-04   p_cons 9.507727e-01   p_joint 6.822727e-03

Joint ci ratio: 1.050558e-01	ci left: 2.922359e-03	ci right 3.248535e-03	k: 1387	n:450000
Cons ci ratio: 1.329371e-03	ci left: 9.501596e-01	ci right 9.514257e-01	k: 427858	n:450000
KS ci ratio: 2.002172e-01	ci left: 7.659168e-04	ci right 9.383923e-04	k: 382	n:450000
CDC42EP1   450000 perm   164 sec   (2744 perm/sec)   p_kst 8.488889e-04   p_cons 9.507956e-01   p_joint 3.082222e-03

Joint ci ratio: 6.967149e-02	ci left: 6.596579e-03	ci right 7.074882e-03	k: 3143	n:460000
Cons ci ratio: 1.314810e-03	ci left: 9.501689e-01	ci right 9.514211e-01	k: 437367	n:460000
KS ci ratio: 1.979053e-01	ci left: 7.678566e-04	ci right 9.385315e-04	k: 391	n:460000
CDC42EP1   460000 perm   170 sec   (2713 perm/sec)   p_kst 8.500000e-04   p_cons 9.507978e-01   p_joint 6.832609e-03

Joint ci ratio: 6.894088e-02	ci left: 6.596309e-03	ci right 7.069376e-03	k: 3210	n:470000
Cons ci ratio: 1.301249e-03	ci left: 9.501393e-01	ci right 9.513786e-01	k: 446858	n:470000
KS ci ratio: 1.961619e-01	ci left: 7.656780e-04	ci right 9.341903e-04	k: 398	n:470000
CDC42EP1   470000 perm   175 sec   (2682 perm/sec)   p_kst 8.468085e-04   p_cons 9.507617e-01   p_joint 6.829787e-03

Joint ci ratio: 6.823279e-02	ci left: 6.596075e-03	ci right 7.064074e-03	k: 3277	n:480000
Cons ci ratio: 1.287955e-03	ci left: 9.501215e-01	ci right 9.513481e-01	k: 456354	n:480000
KS ci ratio: 1.928074e-01	ci left: 7.774734e-04	ci right 9.453124e-04	k: 412	n:480000
CDC42EP1   480000 perm   181 sec   (2649 perm/sec)   p_kst 8.583333e-04   p_cons 9.507375e-01   p_joint 6.827083e-03

Joint ci ratio: 6.771956e-02	ci left: 6.561764e-03	ci right 7.023689e-03	k: 3327	n:490000
Cons ci ratio: 1.273810e-03	ci left: 9.501969e-01	ci right 9.514100e-01	k: 465895	n:490000
KS ci ratio: 1.909668e-01	ci left: 7.771488e-04	ci right 9.431303e-04	k: 420	n:490000
CDC42EP1   490000 perm   187 sec   (2618 perm/sec)   p_kst 8.571429e-04   p_cons 9.508061e-01   p_joint 6.789796e-03

Joint ci ratio: 6.691919e-02	ci left: 6.587838e-03	ci right 7.045905e-03	k: 3407	n:500000
Cons ci ratio: 1.259957e-03	ci left: 9.502814e-01	ci right 9.514814e-01	k: 475442	n:500000
KS ci ratio: 1.878677e-01	ci left: 7.882786e-04	ci right 9.535933e-04	k: 434	n:500000
CDC42EP1   500000 perm   193 sec   (2588 perm/sec)   p_kst 8.680000e-04   p_cons 9.508840e-01   p_joint 6.814000e-03

Joint ci ratio: 6.626141e-02	ci left: 6.589778e-03	ci right 7.043303e-03	k: 3475	n:510000
Cons ci ratio: 1.247277e-03	ci left: 9.503074e-01	ci right 9.514953e-01	k: 484961	n:510000
KS ci ratio: 1.865858e-01	ci left: 7.840353e-04	ci right 9.472111e-04	k: 440	n:510000
CDC42EP1   510000 perm   199 sec   (2561 perm/sec)   p_kst 8.627451e-04   p_cons 9.509039e-01   p_joint 6.813725e-03

Joint ci ratio: 6.552035e-02	ci left: 6.612474e-03	ci right 7.062278e-03	k: 3554	n:520000
Cons ci ratio: 1.236117e-03	ci left: 9.502454e-01	ci right 9.514226e-01	k: 494435	n:520000
KS ci ratio: 1.845054e-01	ci left: 7.872954e-04	ci right 9.491183e-04	k: 450	n:520000
CDC42EP1   520000 perm   205 sec   (2533 perm/sec)   p_kst 8.653846e-04   p_cons 9.508365e-01   p_joint 6.834615e-03

Joint ci ratio: 9.614893e-02	ci left: 2.976054e-03	ci right 3.278475e-03	k: 1656	n:530000
Cons ci ratio: 1.224458e-03	ci left: 9.502466e-01	ci right 9.514127e-01	k: 503941	n:530000
KS ci ratio: 1.824930e-01	ci left: 7.904421e-04	ci right 9.509439e-04	k: 460	n:530000
CDC42EP1   530000 perm   212 sec   (2504 perm/sec)   p_kst 8.679245e-04   p_cons 9.508321e-01   p_joint 3.124528e-03

Joint ci ratio: 6.417081e-02	ci left: 6.642666e-03	ci right 7.084871e-03	k: 3705	n:540000
Cons ci ratio: 1.212786e-03	ci left: 9.502738e-01	ci right 9.514288e-01	k: 513461	n:540000
KS ci ratio: 1.809300e-01	ci left: 7.899452e-04	ci right 9.488218e-04	k: 468	n:540000
CDC42EP1   540000 perm   218 sec   (2478 perm/sec)   p_kst 8.666667e-04   p_cons 9.508537e-01   p_joint 6.861111e-03

Joint ci ratio: 6.359011e-02	ci left: 6.643552e-03	ci right 7.081667e-03	k: 3773	n:550000
Cons ci ratio: 1.201582e-03	ci left: 9.502891e-01	ci right 9.514334e-01	k: 522975	n:550000
KS ci ratio: 1.794065e-01	ci left: 7.894721e-04	ci right 9.467713e-04	k: 476	n:550000
CDC42EP1   550000 perm   224 sec   (2453 perm/sec)   p_kst 8.654545e-04   p_cons 9.508636e-01   p_joint 6.860000e-03

Joint ci ratio: 6.301663e-02	ci left: 6.646182e-03	ci right 7.080372e-03	k: 3842	n:560000
Cons ci ratio: 1.190820e-03	ci left: 9.502931e-01	ci right 9.514272e-01	k: 532483	n:560000
KS ci ratio: 1.779208e-01	ci left: 7.890212e-04	ci right 9.447886e-04	k: 484	n:560000
CDC42EP1   560000 perm   231 sec   (2428 perm/sec)   p_kst 8.642857e-04   p_cons 9.508625e-01   p_joint 6.860714e-03

Joint ci ratio: 6.246643e-02	ci left: 6.647009e-03	ci right 7.077325e-03	k: 3910	n:570000
Cons ci ratio: 1.180984e-03	ci left: 9.502459e-01	ci right 9.513705e-01	k: 541962	n:570000
KS ci ratio: 1.762925e-01	ci left: 7.902683e-04	ci right 9.447020e-04	k: 493	n:570000
CDC42EP1   570000 perm   237 sec   (2404 perm/sec)   p_kst 8.649123e-04   p_cons 9.508105e-01   p_joint 6.859649e-03

Joint ci ratio: 9.002146e-02	ci left: 3.111889e-03	ci right 3.406901e-03	k: 1889	n:580000
Cons ci ratio: 1.170027e-03	ci left: 9.503096e-01	ci right 9.514238e-01	k: 551504	n:580000
KS ci ratio: 1.750569e-01	ci left: 7.881812e-04	ci right 9.410133e-04	k: 500	n:580000
CDC42EP1   580000 perm   244 sec   (2380 perm/sec)   p_kst 8.620690e-04   p_cons 9.508690e-01   p_joint 3.256897e-03

Joint ci ratio: 6.133930e-02	ci left: 6.663647e-03	ci right 7.086980e-03	k: 4055	n:590000
Cons ci ratio: 1.160735e-03	ci left: 9.502604e-01	ci right 9.513657e-01	k: 560981	n:590000
KS ci ratio: 1.728283e-01	ci left: 7.958971e-04	ci right 9.480558e-04	k: 513	n:590000
CDC42EP1   590000 perm   250 sec   (2357 perm/sec)   p_kst 8.694915e-04   p_cons 9.508153e-01   p_joint 6.872881e-03

Joint ci ratio: 6.080926e-02	ci left: 6.669113e-03	ci right 7.089003e-03	k: 4126	n:600000
Cons ci ratio: 1.150697e-03	ci left: 9.502916e-01	ci right 9.513874e-01	k: 570505	n:600000
KS ci ratio: 1.719943e-01	ci left: 7.906057e-04	ci right 9.409477e-04	k: 518	n:600000
CDC42EP1   600000 perm   257 sec   (2334 perm/sec)   p_kst 8.633333e-04   p_cons 9.508417e-01   p_joint 6.876667e-03

Joint ci ratio: 8.609617e-02	ci left: 3.241028e-03	ci right 3.534212e-03	k: 2065	n:610000
Cons ci ratio: 1.141434e-03	ci left: 9.502790e-01	ci right 9.513659e-01	k: 580003	n:610000
KS ci ratio: 1.710090e-01	ci left: 7.870587e-04	ci right 9.357803e-04	k: 524	n:610000
CDC42EP1   610000 perm   264 sec   (2311 perm/sec)   p_kst 8.590164e-04   p_cons 9.508246e-01   p_joint 3.385246e-03

Joint ci ratio: 8.918298e-02	ci left: 2.967875e-03	ci right 3.246477e-03	k: 1925	n:620000
Cons ci ratio: 1.132040e-03	ci left: 9.502960e-01	ci right 9.513740e-01	k: 589519	n:620000
KS ci ratio: 1.694031e-01	ci left: 7.898062e-04	ci right 9.375025e-04	k: 534	n:620000
CDC42EP1   620000 perm   271 sec   (2289 perm/sec)   p_kst 8.612903e-04   p_cons 9.508371e-01   p_joint 3.104839e-03

Joint ci ratio: 8.838325e-02	ci left: 2.975089e-03	ci right 3.251734e-03	k: 1960	n:630000
Cons ci ratio: 1.122549e-03	ci left: 9.503396e-01	ci right 9.514086e-01	k: 599052	n:630000
KS ci ratio: 1.672285e-01	ci left: 7.985561e-04	ci right 9.457785e-04	k: 548	n:630000
CDC42EP1   630000 perm   278 sec   (2267 perm/sec)   p_kst 8.698413e-04   p_cons 9.508762e-01   p_joint 3.111111e-03

Joint ci ratio: 8.769284e-02	ci left: 2.975974e-03	ci right 3.250429e-03	k: 1991	n:640000
Cons ci ratio: 1.113554e-03	ci left: 9.503599e-01	ci right 9.514203e-01	k: 608571	n:640000
KS ci ratio: 1.663224e-01	ci left: 7.950622e-04	ci right 9.407669e-04	k: 554	n:640000
CDC42EP1   640000 perm   285 sec   (2247 perm/sec)   p_kst 8.656250e-04   p_cons 9.508922e-01   p_joint 3.110937e-03

Joint ci ratio: 5.825932e-02	ci left: 6.715354e-03	ci right 7.119829e-03	k: 4495	n:650000
Cons ci ratio: 1.104698e-03	ci left: 9.503858e-01	ci right 9.514378e-01	k: 618094	n:650000
KS ci ratio: 1.654310e-01	ci left: 7.916780e-04	ci right 9.359073e-04	k: 560	n:650000
CDC42EP1   650000 perm   292 sec   (2225 perm/sec)   p_kst 8.615385e-04   p_cons 9.509138e-01   p_joint 6.915385e-03

Joint ci ratio: 5.774733e-02	ci left: 6.733062e-03	ci right 7.134921e-03	k: 4575	n:660000
Cons ci ratio: 1.096442e-03	ci left: 9.503775e-01	ci right 9.514216e-01	k: 627595	n:660000
KS ci ratio: 1.646991e-01	ci left: 7.869455e-04	ci right 9.296155e-04	k: 565	n:660000
CDC42EP1   660000 perm   299 sec   (2205 perm/sec)   p_kst 8.560606e-04   p_cons 9.509015e-01   p_joint 6.931818e-03

Joint ci ratio: 5.733548e-02	ci left: 6.729658e-03	ci right 7.128355e-03	k: 4641	n:670000
Cons ci ratio: 1.088351e-03	ci left: 9.503709e-01	ci right 9.514073e-01	k: 637097	n:670000
KS ci ratio: 1.638333e-01	ci left: 7.837870e-04	ci right 9.250639e-04	k: 571	n:670000
CDC42EP1   670000 perm   307 sec   (2185 perm/sec)   p_kst 8.522388e-04   p_cons 9.508910e-01   p_joint 6.926866e-03

Joint ci ratio: 5.692015e-02	ci left: 6.729264e-03	ci right 7.124954e-03	k: 4709	n:680000
Cons ci ratio: 1.080453e-03	ci left: 9.503631e-01	ci right 9.513919e-01	k: 646598	n:680000
KS ci ratio: 1.628401e-01	ci left: 7.821340e-04	ci right 9.221746e-04	k: 578	n:680000
CDC42EP1   680000 perm   314 sec   (2165 perm/sec)   p_kst 8.500000e-04   p_cons 9.508794e-01   p_joint 6.925000e-03

Joint ci ratio: 5.648395e-02	ci left: 6.736036e-03	ci right 7.128990e-03	k: 4782	n:690000
Cons ci ratio: 1.072708e-03	ci left: 9.503570e-01	ci right 9.513784e-01	k: 656100	n:690000
KS ci ratio: 1.622811e-01	ci left: 7.763598e-04	ci right 9.148427e-04	k: 582	n:690000
CDC42EP1   690000 perm   322 sec   (2146 perm/sec)   p_kst 8.434783e-04   p_cons 9.508696e-01   p_joint 6.930435e-03

Joint ci ratio: 5.618009e-02	ci left: 6.713044e-03	ci right 7.102482e-03	k: 4834	n:700000
Cons ci ratio: 1.064801e-03	ci left: 9.503797e-01	ci right 9.513937e-01	k: 665622	n:700000
KS ci ratio: 1.618658e-01	ci left: 7.693806e-04	ci right 9.062332e-04	k: 585	n:700000
CDC42EP1   700000 perm   329 sec   (2127 perm/sec)   p_kst 8.357143e-04   p_cons 9.508886e-01   p_joint 6.905714e-03

Joint ci ratio: 5.574342e-02	ci left: 6.724040e-03	ci right 7.110986e-03	k: 4910	n:710000
Cons ci ratio: 1.057402e-03	ci left: 9.503722e-01	ci right 9.513790e-01	k: 675123	n:710000
KS ci ratio: 1.610437e-01	ci left: 7.666534e-04	ci right 9.022614e-04	k: 591	n:710000
CDC42EP1   710000 perm   337 sec   (2108 perm/sec)   p_kst 8.323944e-04   p_cons 9.508775e-01   p_joint 6.915493e-03

Joint ci ratio: 5.540634e-02	ci left: 6.712824e-03	ci right 7.096715e-03	k: 4970	n:720000
Cons ci ratio: 1.050029e-03	ci left: 9.503761e-01	ci right 9.513759e-01	k: 684632	n:720000
KS ci ratio: 1.597004e-01	ci left: 7.693371e-04	ci right 9.041757e-04	k: 601	n:720000
CDC42EP1   720000 perm   345 sec   (2089 perm/sec)   p_kst 8.347222e-04   p_cons 9.508778e-01   p_joint 6.902778e-03

Joint ci ratio: 5.500379e-02	ci left: 6.719488e-03	ci right 7.100879e-03	k: 5043	n:730000
Cons ci ratio: 1.043099e-03	ci left: 9.503537e-01	ci right 9.513469e-01	k: 694122	n:730000
KS ci ratio: 1.577464e-01	ci left: 7.785303e-04	ci right 9.131527e-04	k: 616	n:730000
CDC42EP1   730000 perm   352 sec   (2071 perm/sec)   p_kst 8.438356e-04   p_cons 9.508521e-01   p_joint 6.908219e-03

Joint ci ratio: 5.463678e-02	ci left: 6.719317e-03	ci right 7.098072e-03	k: 5111	n:740000
Cons ci ratio: 1.036365e-03	ci left: 9.503265e-01	ci right 9.513132e-01	k: 703608	n:740000
KS ci ratio: 1.566083e-01	ci left: 7.796935e-04	ci right 9.134529e-04	k: 625	n:740000
CDC42EP1   740000 perm   360 sec   (2054 perm/sec)   p_kst 8.445946e-04   p_cons 9.508216e-01   p_joint 6.906757e-03

Joint ci ratio: 5.423486e-02	ci left: 6.729681e-03	ci right 7.106143e-03	k: 5187	n:750000
Cons ci ratio: 1.029347e-03	ci left: 9.503376e-01	ci right 9.513176e-01	k: 713122	n:750000
KS ci ratio: 1.557401e-01	ci left: 7.782661e-04	ci right 9.109714e-04	k: 632	n:750000
CDC42EP1   750000 perm   369 sec   (2035 perm/sec)   p_kst 8.426667e-04   p_cons 9.508293e-01   p_joint 6.916000e-03

Joint ci ratio: 5.375434e-02	ci left: 6.761852e-03	ci right 7.136658e-03	k: 5280	n:760000
Cons ci ratio: 1.022082e-03	ci left: 9.503841e-01	ci right 9.513572e-01	k: 722663	n:760000
KS ci ratio: 1.546446e-01	ci left: 7.794080e-04	ci right 9.112865e-04	k: 641	n:760000
CDC42EP1   760000 perm   377 sec   (2017 perm/sec)   p_kst 8.434211e-04   p_cons 9.508724e-01   p_joint 6.947368e-03

Joint ci ratio: 5.334137e-02	ci left: 6.779105e-03	ci right 7.151892e-03	k: 5362	n:770000
Cons ci ratio: 1.015659e-03	ci left: 9.503654e-01	ci right 9.513325e-01	k: 732155	n:770000
KS ci ratio: 1.533363e-01	ci left: 7.830212e-04	ci right 9.142873e-04	k: 652	n:770000
CDC42EP1   770000 perm   385 sec   (2000 perm/sec)   p_kst 8.467532e-04   p_cons 9.508506e-01   p_joint 6.963636e-03

Joint ci ratio: 5.303103e-02	ci left: 6.771887e-03	ci right 7.142045e-03	k: 5425	n:780000
Cons ci ratio: 1.009619e-03	ci left: 9.503228e-01	ci right 9.512841e-01	k: 741628	n:780000
KS ci ratio: 1.521754e-01	ci left: 7.853130e-04	ci right 9.158757e-04	k: 662	n:780000
CDC42EP1   780000 perm   394 sec   (1982 perm/sec)   p_kst 8.487179e-04   p_cons 9.508051e-01   p_joint 6.955128e-03

Joint ci ratio: 5.275024e-02	ci left: 6.758613e-03	ci right 7.126029e-03	k: 5483	n:790000
Cons ci ratio: 1.003019e-03	ci left: 9.503437e-01	ci right 9.512986e-01	k: 751150	n:790000
KS ci ratio: 1.516051e-01	ci left: 7.814608e-04	ci right 9.108520e-04	k: 667	n:790000
CDC42EP1   790000 perm   402 sec   (1965 perm/sec)   p_kst 8.443038e-04   p_cons 9.508228e-01   p_joint 6.940506e-03

Joint ci ratio: 5.237403e-02	ci left: 6.771583e-03	ci right 7.137000e-03	k: 5562	n:800000
Cons ci ratio: 9.968533e-04	ci left: 9.503351e-01	ci right 9.512841e-01	k: 760649	n:800000
KS ci ratio: 1.508171e-01	ci left: 7.801114e-04	ci right 9.085472e-04	k: 674	n:800000
CDC42EP1   800000 perm   410 sec   (1949 perm/sec)   p_kst 8.425000e-04   p_cons 9.508112e-01   p_joint 6.952500e-03

Joint ci ratio: 5.201040e-02	ci left: 6.783024e-03	ci right 7.146441e-03	k: 5640	n:810000
Cons ci ratio: 9.908782e-04	ci left: 9.503193e-01	ci right 9.512626e-01	k: 770142	n:810000
KS ci ratio: 1.502619e-01	ci left: 7.764206e-04	ci right 9.037359e-04	k: 679	n:810000
CDC42EP1   810000 perm   419 sec   (1933 perm/sec)   p_kst 8.382716e-04   p_cons 9.507926e-01   p_joint 6.962963e-03

Joint ci ratio: 5.173629e-02	ci left: 6.772525e-03	ci right 7.133410e-03	k: 5700	n:820000
Cons ci ratio: 9.847525e-04	ci left: 9.503284e-01	ci right 9.512659e-01	k: 779655	n:820000
KS ci ratio: 1.494946e-01	ci left: 7.751685e-04	ci right 9.015713e-04	k: 686	n:820000
CDC42EP1   820000 perm   428 sec   (1918 perm/sec)   p_kst 8.365854e-04   p_cons 9.507988e-01   p_joint 6.951220e-03

Joint ci ratio: 5.149799e-02	ci left: 6.753958e-03	ci right 7.112147e-03	k: 5753	n:830000
Cons ci ratio: 9.785373e-04	ci left: 9.503567e-01	ci right 9.512883e-01	k: 789184	n:830000
KS ci ratio: 1.487389e-01	ci left: 7.739481e-04	ci right 8.994572e-04	k: 693	n:830000
CDC42EP1   830000 perm   436 sec   (1902 perm/sec)   p_kst 8.349398e-04   p_cons 9.508241e-01   p_joint 6.931325e-03

Joint ci ratio: 5.120969e-02	ci left: 6.749941e-03	ci right 7.105853e-03	k: 5818	n:840000
Cons ci ratio: 9.727600e-04	ci left: 9.503533e-01	ci right 9.512793e-01	k: 798687	n:840000
KS ci ratio: 1.476785e-01	ci left: 7.761978e-04	ci right 9.010952e-04	k: 703	n:840000
CDC42EP1   840000 perm   445 sec   (1887 perm/sec)   p_kst 8.369048e-04   p_cons 9.508179e-01   p_joint 6.926190e-03

Joint ci ratio: 5.087397e-02	ci left: 6.759963e-03	ci right 7.113998e-03	k: 5895	n:850000
Cons ci ratio: 9.671568e-04	ci left: 9.503428e-01	ci right 9.512635e-01	k: 808184	n:850000
KS ci ratio: 1.463332e-01	ci left: 7.817978e-04	ci right 9.063502e-04	k: 716	n:850000
CDC42EP1   850000 perm   454 sec   (1873 perm/sec)   p_kst 8.423529e-04   p_cons 9.508047e-01   p_joint 6.935294e-03

Joint ci ratio: 5.056608e-02	ci left: 6.764018e-03	ci right 7.116059e-03	k: 5967	n:860000
Cons ci ratio: 9.615417e-04	ci left: 9.503431e-01	ci right 9.512585e-01	k: 817690	n:860000
KS ci ratio: 1.448256e-01	ci left: 7.895140e-04	ci right 9.138877e-04	k: 731	n:860000
CDC42EP1   860000 perm   463 sec   (1858 perm/sec)   p_kst 8.500000e-04   p_cons 9.508023e-01   p_joint 6.938372e-03

Joint ci ratio: 5.027628e-02	ci left: 6.764581e-03	ci right 7.114576e-03	k: 6036	n:870000
Cons ci ratio: 9.556474e-04	ci left: 9.503804e-01	ci right 9.512902e-01	k: 827228	n:870000
KS ci ratio: 1.440407e-01	ci left: 7.893022e-04	ci right 9.129107e-04	k: 739	n:870000
CDC42EP1   870000 perm   472 sec   (1844 perm/sec)   p_kst 8.494253e-04   p_cons 9.508368e-01   p_joint 6.937931e-03

Joint ci ratio: 7.857269e-02	ci left: 2.709608e-03	ci right 2.932321e-03	k: 2481	n:880000
Cons ci ratio: 9.504833e-04	ci left: 9.503552e-01	ci right 9.512600e-01	k: 836712	n:880000
KS ci ratio: 1.431726e-01	ci left: 7.901927e-04	ci right 9.131312e-04	k: 748	n:880000
CDC42EP1   880000 perm   481 sec   (1830 perm/sec)   p_kst 8.500000e-04   p_cons 9.508091e-01   p_joint 2.819318e-03

Joint ci ratio: 7.810202e-02	ci left: 2.712211e-03	ci right 2.933741e-03	k: 2511	n:890000
Cons ci ratio: 9.455494e-04	ci left: 9.503159e-01	ci right 9.512160e-01	k: 846183	n:890000
KS ci ratio: 1.426028e-01	ci left: 7.878146e-04	ci right 9.098538e-04	k: 754	n:890000
CDC42EP1   890000 perm   490 sec   (1816 perm/sec)   p_kst 8.471910e-04   p_cons 9.507674e-01   p_joint 2.821348e-03

Joint ci ratio: 7.774713e-02	ci left: 2.707132e-03	ci right 2.927198e-03	k: 2534	n:900000
Cons ci ratio: 9.401886e-04	ci left: 9.503277e-01	ci right 9.512227e-01	k: 855699	n:900000
KS ci ratio: 1.422269e-01	ci left: 7.833471e-04	ci right 9.043472e-04	k: 758	n:900000
CDC42EP1   900000 perm   499 sec   (1802 perm/sec)   p_kst 8.422222e-04   p_cons 9.507767e-01   p_joint 2.815556e-03

Joint ci ratio: 4.915327e-02	ci left: 6.770020e-03	ci right 7.112250e-03	k: 6315	n:910000
Cons ci ratio: 9.347533e-04	ci left: 9.503558e-01	ci right 9.512457e-01	k: 865230	n:910000
KS ci ratio: 1.411155e-01	ci left: 7.874584e-04	ci right 9.080630e-04	k: 770	n:910000
CDC42EP1   910000 perm   509 sec   (1789 perm/sec)   p_kst 8.461538e-04   p_cons 9.508022e-01   p_joint 6.939560e-03

Joint ci ratio: 4.885615e-02	ci left: 6.779104e-03	ci right 7.119664e-03	k: 6392	n:920000
Cons ci ratio: 9.294650e-04	ci left: 9.503779e-01	ci right 9.512627e-01	k: 874756	n:920000
KS ci ratio: 1.402090e-01	ci left: 7.893861e-04	ci right 9.094446e-04	k: 780	n:920000
CDC42EP1   920000 perm   518 sec   (1776 perm/sec)   p_kst 8.478261e-04   p_cons 9.508217e-01   p_joint 6.947826e-03

Joint ci ratio: 4.853793e-02	ci left: 6.795435e-03	ci right 7.134529e-03	k: 6476	n:930000
Cons ci ratio: 9.243290e-04	ci left: 9.503930e-01	ci right 9.512730e-01	k: 884276	n:930000
KS ci ratio: 1.393198e-01	ci left: 7.912749e-04	ci right 9.107940e-04	k: 790	n:930000
CDC42EP1   930000 perm   528 sec   (1762 perm/sec)   p_kst 8.494624e-04   p_cons 9.508344e-01   p_joint 6.963441e-03

Joint ci ratio: 4.826290e-02	ci left: 6.800914e-03	ci right 7.138305e-03	k: 6550	n:940000
Cons ci ratio: 9.193609e-04	ci left: 9.503993e-01	ci right 9.512745e-01	k: 893788	n:940000
KS ci ratio: 1.387075e-01	ci left: 7.900448e-04	ci right 9.088104e-04	k: 797	n:940000
CDC42EP1   940000 perm   537 sec   (1749 perm/sec)   p_kst 8.478723e-04   p_cons 9.508383e-01   p_joint 6.968085e-03

Joint ci ratio: 4.799614e-02	ci left: 6.805243e-03	ci right 7.140932e-03	k: 6623	n:950000
Cons ci ratio: 9.143073e-04	ci left: 9.504224e-01	ci right 9.512928e-01	k: 903316	n:950000
KS ci ratio: 1.381032e-01	ci left: 7.888418e-04	ci right 9.068674e-04	k: 804	n:950000
CDC42EP1   950000 perm   547 sec   (1737 perm/sec)   p_kst 8.463158e-04   p_cons 9.508589e-01   p_joint 6.971579e-03

Joint ci ratio: 4.776249e-02	ci left: 6.801252e-03	ci right 7.135066e-03	k: 6688	n:960000
Cons ci ratio: 9.097515e-04	ci left: 9.504021e-01	ci right 9.512681e-01	k: 912803	n:960000
KS ci ratio: 1.370850e-01	ci left: 7.926945e-04	ci right 9.103508e-04	k: 816	n:960000
CDC42EP1   960000 perm   557 sec   (1725 perm/sec)   p_kst 8.500000e-04   p_cons 9.508365e-01   p_joint 6.966667e-03

Joint ci ratio: 4.751451e-02	ci left: 6.802442e-03	ci right 7.134533e-03	k: 6758	n:970000
Cons ci ratio: 9.051234e-04	ci left: 9.503967e-01	ci right 9.512583e-01	k: 922304	n:970000
KS ci ratio: 1.367510e-01	ci left: 7.885048e-04	ci right 9.052307e-04	k: 820	n:970000
CDC42EP1   970000 perm   566 sec   (1713 perm/sec)   p_kst 8.453608e-04   p_cons 9.508289e-01   p_joint 6.967010e-03

Joint ci ratio: 4.729128e-02	ci left: 6.797561e-03	ci right 7.127812e-03	k: 6822	n:980000
Cons ci ratio: 9.007125e-04	ci left: 9.503761e-01	ci right 9.512335e-01	k: 931790	n:980000
KS ci ratio: 1.363367e-01	ci left: 7.853864e-04	ci right 9.012700e-04	k: 825	n:980000
CDC42EP1   980000 perm   576 sec   (1701 perm/sec)   p_kst 8.418367e-04   p_cons 9.508061e-01   p_joint 6.961224e-03

Joint ci ratio: 4.710906e-02	ci left: 6.781801e-03	ci right 7.109983e-03	k: 6875	n:990000
Cons ci ratio: 8.956201e-04	ci left: 9.504340e-01	ci right 9.512866e-01	k: 941353	n:990000
KS ci ratio: 1.357627e-01	ci left: 7.842833e-04	ci right 8.994775e-04	k: 832	n:990000
CDC42EP1   990000 perm   586 sec   (1689 perm/sec)   p_kst 8.404040e-04   p_cons 9.508616e-01   p_joint 6.944444e-03

Joint ci ratio: 4.683035e-02	ci left: 6.795021e-03	ci right 7.121845e-03	k: 6957	n:1000000
Cons ci ratio: 8.913368e-04	ci left: 9.504144e-01	ci right 9.512629e-01	k: 950840	n:1000000
KS ci ratio: 1.353573e-01	ci left: 7.812708e-04	ci right 8.956523e-04	k: 837	n:1000000
CDC42EP1   1000000 perm   596 sec   (1678 perm/sec)   p_kst 8.370000e-04   p_cons 9.508400e-01   p_joint 6.957000e-03

Joint ci ratio: 4.662327e-02	ci left: 6.788412e-03	ci right 7.113435e-03	k: 7019	n:1010000
Cons ci ratio: 8.868699e-04	ci left: 9.504211e-01	ci right 9.512654e-01	k: 960353	n:1010000
KS ci ratio: 1.344774e-01	ci left: 7.840590e-04	ci right 8.980429e-04	k: 848	n:1010000
CDC42EP1   1010000 perm   606 sec   (1666 perm/sec)   p_kst 8.396040e-04   p_cons 9.508446e-01   p_joint 6.949505e-03

Joint ci ratio: 4.638265e-02	ci left: 6.792596e-03	ci right 7.116096e-03	k: 7092	n:1020000
Cons ci ratio: 8.825066e-04	ci left: 9.504238e-01	ci right 9.512639e-01	k: 969862	n:1020000
KS ci ratio: 1.339265e-01	ci left: 7.830044e-04	ci right 8.963316e-04	k: 855	n:1020000
CDC42EP1   1020000 perm   617 sec   (1654 perm/sec)   p_kst 8.382353e-04   p_cons 9.508451e-01   p_joint 6.952941e-03

Joint ci ratio: 4.612952e-02	ci left: 6.801501e-03	ci right 7.123611e-03	k: 7170	n:1030000
Cons ci ratio: 8.781980e-04	ci left: 9.504273e-01	ci right 9.512633e-01	k: 979372	n:1030000
KS ci ratio: 1.334598e-01	ci left: 7.810328e-04	ci right 8.936494e-04	k: 861	n:1030000
CDC42EP1   1030000 perm   627 sec   (1643 perm/sec)   p_kst 8.359223e-04   p_cons 9.508466e-01   p_joint 6.961165e-03

Joint ci ratio: 4.589323e-02	ci left: 6.806438e-03	ci right 7.127087e-03	k: 7244	n:1040000
Cons ci ratio: 8.740597e-04	ci left: 9.504193e-01	ci right 9.512513e-01	k: 988870	n:1040000
KS ci ratio: 1.329213e-01	ci left: 7.800294e-04	ci right 8.920115e-04	k: 868	n:1040000
CDC42EP1   1040000 perm   637 sec   (1632 perm/sec)   p_kst 8.346154e-04   p_cons 9.508365e-01   p_joint 6.965385e-03

Joint ci ratio: 4.567940e-02	ci left: 6.805635e-03	ci right 7.124713e-03	k: 7312	n:1050000
Cons ci ratio: 8.696869e-04	ci left: 9.504429e-01	ci right 9.512708e-01	k: 998401	n:1050000
KS ci ratio: 1.320877e-01	ci left: 7.827295e-04	ci right 8.943394e-04	k: 879	n:1050000
CDC42EP1   1050000 perm   648 sec   (1620 perm/sec)   p_kst 8.371429e-04   p_cons 9.508581e-01   p_joint 6.963810e-03

Joint ci ratio: 4.550269e-02	ci left: 6.794591e-03	ci right 7.111886e-03	k: 7369	n:1060000
Cons ci ratio: 8.656585e-04	ci left: 9.504358e-01	ci right 9.512598e-01	k: 1007900	n:1060000
KS ci ratio: 1.314174e-01	ci left: 7.835560e-04	ci right 8.946724e-04	k: 888	n:1060000
CDC42EP1   1060000 perm   659 sec   (1608 perm/sec)   p_kst 8.377358e-04   p_cons 9.508491e-01   p_joint 6.951887e-03

Joint ci ratio: 4.532187e-02	ci left: 6.785603e-03	ci right 7.101187e-03	k: 7428	n:1070000
Cons ci ratio: 8.614185e-04	ci left: 9.504579e-01	ci right 9.512779e-01	k: 1017430	n:1070000
KS ci ratio: 1.306843e-01	ci left: 7.852725e-04	ci right 8.959630e-04	k: 898	n:1070000
CDC42EP1   1070000 perm   670 sec   (1597 perm/sec)   p_kst 8.392523e-04   p_cons 9.508692e-01   p_joint 6.942056e-03

Joint ci ratio: 4.513104e-02	ci left: 6.780447e-03	ci right 7.094428e-03	k: 7491	n:1080000
Cons ci ratio: 8.574950e-04	ci left: 9.504518e-01	ci right 9.512680e-01	k: 1026930	n:1080000
KS ci ratio: 1.301067e-01	ci left: 7.851672e-04	ci right 8.953159e-04	k: 906	n:1080000
CDC42EP1   1080000 perm   681 sec   (1586 perm/sec)   p_kst 8.388889e-04   p_cons 9.508611e-01   p_joint 6.936111e-03

Joint ci ratio: 4.490074e-02	ci left: 6.788089e-03	ci right 7.100779e-03	k: 7568	n:1090000
Cons ci ratio: 8.534234e-04	ci left: 9.504678e-01	ci right 9.512802e-01	k: 1036454	n:1090000
KS ci ratio: 1.294660e-01	ci left: 7.859527e-04	ci right 8.956268e-04	k: 915	n:1090000
CDC42EP1   1090000 perm   692 sec   (1576 perm/sec)   p_kst 8.394495e-04   p_cons 9.508752e-01   p_joint 6.943119e-03

Joint ci ratio: 4.469748e-02	ci left: 6.788403e-03	ci right 7.099656e-03	k: 7637	n:1100000
Cons ci ratio: 8.493183e-04	ci left: 9.504937e-01	ci right 9.513022e-01	k: 1045989	n:1100000
KS ci ratio: 1.289742e-01	ci left: 7.849655e-04	ci right 8.940540e-04	k: 922	n:1100000
CDC42EP1   1100000 perm   703 sec   (1565 perm/sec)   p_kst 8.381818e-04   p_cons 9.508991e-01   p_joint 6.942727e-03

Joint ci ratio: 4.447081e-02	ci left: 6.796734e-03	ci right 7.106748e-03	k: 7715	n:1110000
Cons ci ratio: 8.455083e-04	ci left: 9.504928e-01	ci right 9.512977e-01	k: 1055495	n:1110000
KS ci ratio: 1.283499e-01	ci left: 7.857409e-04	ci right 8.943684e-04	k: 931	n:1110000
CDC42EP1   1110000 perm   714 sec   (1555 perm/sec)   p_kst 8.387387e-04   p_cons 9.508964e-01   p_joint 6.950450e-03

Joint ci ratio: 6.672297e-02	ci left: 2.969789e-03	ci right 3.175652e-03	k: 3440	n:1120000
Cons ci ratio: 8.416122e-04	ci left: 9.505072e-01	ci right 9.513083e-01	k: 1065018	n:1120000
KS ci ratio: 1.278707e-01	ci left: 7.847751e-04	ci right 8.928332e-04	k: 938	n:1120000
CDC42EP1   1120000 perm   725 sec   (1545 perm/sec)   p_kst 8.375000e-04   p_cons 9.509089e-01   p_joint 3.071429e-03

Joint ci ratio: 6.638608e-02	ci left: 2.973965e-03	ci right 3.179037e-03	k: 3475	n:1130000
Cons ci ratio: 8.375470e-04	ci left: 9.505462e-01	ci right 9.513435e-01	k: 1074569	n:1130000
KS ci ratio: 1.269943e-01	ci left: 7.889680e-04	ci right 8.968028e-04	k: 951	n:1130000
CDC42EP1   1130000 perm   736 sec   (1535 perm/sec)   p_kst 8.415929e-04   p_cons 9.509460e-01   p_joint 3.075221e-03

Joint ci ratio: 4.387491e-02	ci left: 6.800917e-03	ci right 7.106860e-03	k: 7926	n:1140000
Cons ci ratio: 8.338377e-04	ci left: 9.505511e-01	ci right 9.513449e-01	k: 1084082	n:1140000
KS ci ratio: 1.265962e-01	ci left: 7.871434e-04	ci right 8.943662e-04	k: 957	n:1140000
CDC42EP1   1140000 perm   747 sec   (1525 perm/sec)   p_kst 8.394737e-04   p_cons 9.509491e-01   p_joint 6.952632e-03

Joint ci ratio: 6.122336e-02	ci left: 3.443399e-03	ci right 3.661722e-03	k: 4084	n:1150000
Cons ci ratio: 8.300765e-04	ci left: 9.505672e-01	ci right 9.513575e-01	k: 1093608	n:1150000
KS ci ratio: 1.259405e-01	ci left: 7.887197e-04	ci right 8.955593e-04	k: 967	n:1150000
CDC42EP1   1150000 perm   759 sec   (1516 perm/sec)   p_kst 8.408696e-04   p_cons 9.509635e-01   p_joint 3.551304e-03

Joint ci ratio: 6.556149e-02	ci left: 2.971663e-03	ci right 3.173934e-03	k: 3563	n:1160000
Cons ci ratio: 8.264422e-04	ci left: 9.505745e-01	ci right 9.513612e-01	k: 1103124	n:1160000
KS ci ratio: 1.253590e-01	ci left: 7.894351e-04	ci right 8.958413e-04	k: 976	n:1160000
CDC42EP1   1160000 perm   770 sec   (1506 perm/sec)   p_kst 8.413793e-04   p_cons 9.509690e-01   p_joint 3.071552e-03

Joint ci ratio: 6.523272e-02	ci left: 2.976531e-03	ci right 3.178079e-03	k: 3599	n:1170000
Cons ci ratio: 8.229683e-04	ci left: 9.505687e-01	ci right 9.513521e-01	k: 1112625	n:1170000
KS ci ratio: 1.249124e-01	ci left: 7.884834e-04	ci right 8.943546e-04	k: 983	n:1170000
CDC42EP1   1170000 perm   782 sec   (1496 perm/sec)   p_kst 8.401709e-04   p_cons 9.509615e-01   p_joint 3.076068e-03

Joint ci ratio: 6.499855e-02	ci left: 2.972981e-03	ci right 3.173539e-03	k: 3625	n:1180000
Cons ci ratio: 8.194187e-04	ci left: 9.505767e-01	ci right 9.513567e-01	k: 1122142	n:1180000
KS ci ratio: 1.244706e-01	ci left: 7.875485e-04	ci right 8.928925e-04	k: 990	n:1180000
CDC42EP1   1180000 perm   794 sec   (1486 perm/sec)   p_kst 8.389831e-04   p_cons 9.509678e-01   p_joint 3.072034e-03

Joint ci ratio: 6.476689e-02	ci left: 2.969492e-03	ci right 3.169074e-03	k: 3651	n:1190000
Cons ci ratio: 8.157823e-04	ci left: 9.505997e-01	ci right 9.513763e-01	k: 1131677	n:1190000
KS ci ratio: 1.238472e-01	ci left: 7.890729e-04	ci right 8.940534e-04	k: 1000	n:1190000
CDC42EP1   1190000 perm   806 sec   (1477 perm/sec)   p_kst 8.403361e-04   p_cons 9.509891e-01   p_joint 3.068067e-03

Joint ci ratio: 6.453769e-02	ci left: 2.966062e-03	ci right 3.164682e-03	k: 3677	n:1200000
Cons ci ratio: 8.122517e-04	ci left: 9.506156e-01	ci right 9.513889e-01	k: 1141204	n:1200000
KS ci ratio: 1.234165e-01	ci left: 7.881502e-04	ci right 8.926166e-04	k: 1007	n:1200000
CDC42EP1   1200000 perm   818 sec   (1467 perm/sec)   p_kst 8.391667e-04   p_cons 9.510033e-01   p_joint 3.064167e-03

Joint ci ratio: 5.970795e-02	ci left: 3.443582e-03	ci right 3.656326e-03	k: 4294	n:1210000
Cons ci ratio: 8.086446e-04	ci left: 9.506454e-01	ci right 9.514153e-01	k: 1150748	n:1210000
KS ci ratio: 1.228087e-01	ci left: 7.896465e-04	ci right 8.937584e-04	k: 1017	n:1210000
CDC42EP1   1210000 perm   830 sec   (1458 perm/sec)   p_kst 8.404959e-04   p_cons 9.510314e-01   p_joint 3.548760e-03

Joint ci ratio: 5.947994e-02	ci left: 3.442002e-03	ci right 3.653809e-03	k: 4327	n:1220000
Cons ci ratio: 8.056589e-04	ci left: 9.506081e-01	ci right 9.513750e-01	k: 1160211	n:1220000
KS ci ratio: 1.224485e-01	ci left: 7.879411e-04	ci right 8.915014e-04	k: 1023	n:1220000
CDC42EP1   1220000 perm   842 sec   (1449 perm/sec)   p_kst 8.385246e-04   p_cons 9.509926e-01   p_joint 3.546721e-03

Joint ci ratio: 5.930232e-02	ci left: 3.434842e-03	ci right 3.645555e-03	k: 4353	n:1230000
Cons ci ratio: 8.022647e-04	ci left: 9.506228e-01	ci right 9.513865e-01	k: 1169737	n:1230000
KS ci ratio: 1.222103e-01	ci left: 7.846875e-04	ci right 8.876050e-04	k: 1027	n:1230000
CDC42EP1   1230000 perm   854 sec   (1440 perm/sec)   p_kst 8.349593e-04   p_cons 9.510057e-01   p_joint 3.539024e-03

Joint ci ratio: 4.214334e-02	ci left: 6.782980e-03	ci right 7.075782e-03	k: 8591	n:1240000
Cons ci ratio: 7.991549e-04	ci left: 9.506089e-01	ci right 9.513697e-01	k: 1179228	n:1240000
KS ci ratio: 1.216788e-01	ci left: 7.853961e-04	ci right 8.879263e-04	k: 1036	n:1240000
CDC42EP1   1240000 perm   866 sec   (1431 perm/sec)   p_kst 8.354839e-04   p_cons 9.509903e-01   p_joint 6.928226e-03

Joint ci ratio: 5.887138e-02	ci left: 3.430328e-03	ci right 3.639183e-03	k: 4417	n:1250000
Cons ci ratio: 7.961697e-04	ci left: 9.505848e-01	ci right 9.513427e-01	k: 1188706	n:1250000
KS ci ratio: 1.212121e-01	ci left: 7.853185e-04	ci right 8.874172e-04	k: 1044	n:1250000
CDC42EP1   1250000 perm   879 sec   (1423 perm/sec)   p_kst 8.352000e-04   p_cons 9.509648e-01   p_joint 3.533600e-03

Joint ci ratio: 5.858019e-02	ci left: 3.437511e-03	ci right 3.645734e-03	k: 4461	n:1260000
Cons ci ratio: 7.930758e-04	ci left: 9.505778e-01	ci right 9.513328e-01	k: 1198205	n:1260000
KS ci ratio: 1.205220e-01	ci left: 7.883218e-04	ci right 8.901857e-04	k: 1056	n:1260000
CDC42EP1   1260000 perm   891 sec   (1414 perm/sec)   p_kst 8.380952e-04   p_cons 9.509563e-01   p_joint 3.540476e-03

Joint ci ratio: 5.836482e-02	ci left: 3.436048e-03	ci right 3.643391e-03	k: 4494	n:1270000
Cons ci ratio: 7.900044e-04	ci left: 9.505726e-01	ci right 9.513246e-01	k: 1207706	n:1270000
KS ci ratio: 1.200685e-01	ci left: 7.882242e-04	ci right 8.896651e-04	k: 1064	n:1270000
CDC42EP1   1270000 perm   903 sec   (1406 perm/sec)   p_kst 8.377953e-04   p_cons 9.509496e-01   p_joint 3.538583e-03

Joint ci ratio: 4.148235e-02	ci left: 6.784383e-03	ci right 7.072543e-03	k: 8867	n:1280000
Cons ci ratio: 7.868102e-04	ci left: 9.505862e-01	ci right 9.513352e-01	k: 1217231	n:1280000
KS ci ratio: 1.193975e-01	ci left: 7.911605e-04	ci right 8.923701e-04	k: 1076	n:1280000
CDC42EP1   1280000 perm   916 sec   (1398 perm/sec)   p_kst 8.406250e-04   p_cons 9.509617e-01   p_joint 6.927344e-03

Joint ci ratio: 4.130098e-02	ci left: 6.791631e-03	ci right 7.078807e-03	k: 8945	n:1290000
Cons ci ratio: 7.836478e-04	ci left: 9.506004e-01	ci right 9.513464e-01	k: 1226757	n:1290000
KS ci ratio: 1.188470e-01	ci left: 7.925484e-04	ci right 8.934353e-04	k: 1086	n:1290000
CDC42EP1   1290000 perm   929 sec   (1389 perm/sec)   p_kst 8.418605e-04   p_cons 9.509744e-01   p_joint 6.934109e-03

Joint ci ratio: 4.114722e-02	ci left: 6.790394e-03	ci right 7.076424e-03	k: 9012	n:1300000
Cons ci ratio: 7.805876e-04	ci left: 9.506067e-01	ci right 9.513498e-01	k: 1236273	n:1300000
KS ci ratio: 1.184120e-01	ci left: 7.924231e-04	ci right 8.928991e-04	k: 1094	n:1300000
CDC42EP1   1300000 perm   941 sec   (1382 perm/sec)   p_kst 8.415385e-04   p_cons 9.509792e-01   p_joint 6.932308e-03

Joint ci ratio: 5.732788e-02	ci left: 3.454512e-03	ci right 3.659143e-03	k: 4658	n:1310000
Cons ci ratio: 7.774739e-04	ci left: 9.506236e-01	ci right 9.513637e-01	k: 1245803	n:1310000
KS ci ratio: 1.178749e-01	ci left: 7.937821e-04	ci right 8.939421e-04	k: 1104	n:1310000
CDC42EP1   1310000 perm   953 sec   (1374 perm/sec)   p_kst 8.427481e-04   p_cons 9.509947e-01   p_joint 3.555725e-03

Joint ci ratio: 5.706498e-02	ci left: 3.460452e-03	ci right 3.664463e-03	k: 4701	n:1320000
Cons ci ratio: 7.745607e-04	ci left: 9.506205e-01	ci right 9.513578e-01	k: 1255307	n:1320000
KS ci ratio: 1.173978e-01	ci left: 7.943862e-04	ci right 8.941885e-04	k: 1113	n:1320000
CDC42EP1   1320000 perm   966 sec   (1367 perm/sec)   p_kst 8.431818e-04   p_cons 9.509902e-01   p_joint 3.561364e-03

Joint ci ratio: 5.683573e-02	ci left: 3.462598e-03	ci right 3.665889e-03	k: 4739	n:1330000
Cons ci ratio: 7.717360e-04	ci left: 9.506106e-01	ci right 9.513453e-01	k: 1264802	n:1330000
KS ci ratio: 1.169264e-01	ci left: 7.949820e-04	ci right 8.944304e-04	k: 1122	n:1330000
CDC42EP1   1330000 perm   979 sec   (1359 perm/sec)   p_kst 8.436090e-04   p_cons 9.509789e-01   p_joint 3.563158e-03

Joint ci ratio: 5.656172e-02	ci left: 3.470600e-03	ci right 3.673346e-03	k: 4785	n:1340000
Cons ci ratio: 7.687759e-04	ci left: 9.506212e-01	ci right 9.513530e-01	k: 1274324	n:1340000
KS ci ratio: 1.165637e-01	ci left: 7.941206e-04	ci right 8.931319e-04	k: 1129	n:1340000
CDC42EP1   1340000 perm   992 sec   (1351 perm/sec)   p_kst 8.425373e-04   p_cons 9.509881e-01   p_joint 3.570896e-03

Joint ci ratio: 5.639715e-02	ci left: 3.465339e-03	ci right 3.667170e-03	k: 4813	n:1350000
Cons ci ratio: 7.658738e-04	ci left: 9.506286e-01	ci right 9.513576e-01	k: 1283842	n:1350000
KS ci ratio: 1.161023e-01	ci left: 7.947109e-04	ci right 8.933767e-04	k: 1138	n:1350000
CDC42EP1   1350000 perm   1005 sec   (1343 perm/sec)   p_kst 8.429630e-04   p_cons 9.509941e-01   p_joint 3.565185e-03

Joint ci ratio: 5.619907e-02	ci left: 3.464507e-03	ci right 3.665558e-03	k: 4847	n:1360000
Cons ci ratio: 7.630645e-04	ci left: 9.506285e-01	ci right 9.513549e-01	k: 1293350	n:1360000
KS ci ratio: 1.157472e-01	ci left: 7.938653e-04	ci right 8.921040e-04	k: 1145	n:1360000
CDC42EP1   1360000 perm   1018 sec   (1335 perm/sec)   p_kst 8.419118e-04   p_cons 9.509926e-01   p_joint 3.563971e-03

Joint ci ratio: 5.600307e-02	ci left: 3.463688e-03	ci right 3.663967e-03	k: 4881	n:1370000
Cons ci ratio: 7.602800e-04	ci left: 9.506292e-01	ci right 9.513529e-01	k: 1302859	n:1370000
KS ci ratio: 1.153954e-01	ci left: 7.930324e-04	ci right 8.908495e-04	k: 1152	n:1370000
CDC42EP1   1370000 perm   1032 sec   (1328 perm/sec)   p_kst 8.408759e-04   p_cons 9.509920e-01   p_joint 3.562774e-03

Joint ci ratio: 5.577496e-02	ci left: 3.467169e-03	ci right 3.666807e-03	k: 4921	n:1380000
Cons ci ratio: 7.573785e-04	ci left: 9.506480e-01	ci right 9.513690e-01	k: 1312393	n:1380000
KS ci ratio: 1.149476e-01	ci left: 7.936197e-04	ci right 8.911036e-04	k: 1161	n:1380000
CDC42EP1   1380000 perm   1045 sec   (1321 perm/sec)   p_kst 8.413043e-04   p_cons 9.510094e-01   p_joint 3.565942e-03

Joint ci ratio: 5.558897e-02	ci left: 3.465636e-03	ci right 3.664499e-03	k: 4954	n:1390000
Cons ci ratio: 7.545973e-04	ci left: 9.506557e-01	ci right 9.513741e-01	k: 1321912	n:1390000
KS ci ratio: 1.145540e-01	ci left: 7.935004e-04	ci right 8.906133e-04	k: 1169	n:1390000
CDC42EP1   1390000 perm   1058 sec   (1314 perm/sec)   p_kst 8.410072e-04   p_cons 9.510158e-01   p_joint 3.564029e-03

Joint ci ratio: 5.536586e-02	ci left: 3.469057e-03	ci right 3.667291e-03	k: 4994	n:1400000
Cons ci ratio: 7.519963e-04	ci left: 9.506447e-01	ci right 9.513606e-01	k: 1331405	n:1400000
KS ci ratio: 1.142129e-01	ci left: 7.926894e-04	ci right 8.893947e-04	k: 1176	n:1400000
CDC42EP1   1400000 perm   1071 sec   (1307 perm/sec)   p_kst 8.400000e-04   p_cons 9.510036e-01   p_joint 3.567143e-03

Joint ci ratio: 5.697432e-02	ci left: 3.250748e-03	ci right 3.442081e-03	k: 4717	n:1410000
Cons ci ratio: 7.493878e-04	ci left: 9.506381e-01	ci right 9.513515e-01	k: 1340904	n:1410000
KS ci ratio: 1.137787e-01	ci left: 7.932685e-04	ci right 8.896519e-04	k: 1185	n:1410000
CDC42EP1   1410000 perm   1085 sec   (1300 perm/sec)   p_kst 8.404255e-04   p_cons 9.509957e-01   p_joint 3.345390e-03

Joint ci ratio: 5.496019e-02	ci left: 3.471591e-03	ci right 3.668471e-03	k: 5068	n:1420000
Cons ci ratio: 7.467442e-04	ci left: 9.506394e-01	ci right 9.513503e-01	k: 1350414	n:1420000
KS ci ratio: 1.131128e-01	ci left: 7.972616e-04	ci right 8.935254e-04	k: 1199	n:1420000
CDC42EP1   1420000 perm   1098 sec   (1293 perm/sec)   p_kst 8.443662e-04   p_cons 9.509958e-01   p_joint 3.569014e-03

Joint ci ratio: 5.663939e-02	ci left: 3.243887e-03	ci right 3.433658e-03	k: 4773	n:1430000
Cons ci ratio: 7.441005e-04	ci left: 9.506442e-01	ci right 9.513525e-01	k: 1359929	n:1430000
KS ci ratio: 1.127844e-01	ci left: 7.964432e-04	ci right 8.923103e-04	k: 1206	n:1430000
CDC42EP1   1430000 perm   1112 sec   (1286 perm/sec)   p_kst 8.433566e-04   p_cons 9.509993e-01   p_joint 3.337762e-03

Joint ci ratio: 5.652138e-02	ci left: 3.235052e-03	ci right 3.423899e-03	k: 4793	n:1440000
Cons ci ratio: 7.414128e-04	ci left: 9.506580e-01	ci right 9.513638e-01	k: 1369457	n:1440000
KS ci ratio: 1.126913e-01	ci left: 7.922619e-04	ci right 8.875419e-04	k: 1208	n:1440000
CDC42EP1   1440000 perm   1126 sec   (1279 perm/sec)   p_kst 8.388889e-04   p_cons 9.510118e-01   p_joint 3.328472e-03

Joint ci ratio: 5.453739e-02	ci left: 3.453501e-03	ci right 3.647801e-03	k: 5147	n:1450000
Cons ci ratio: 7.387484e-04	ci left: 9.506723e-01	ci right 9.513755e-01	k: 1378986	n:1450000
KS ci ratio: 1.121820e-01	ci left: 7.941710e-04	ci right 8.892203e-04	k: 1219	n:1450000
CDC42EP1   1450000 perm   1140 sec   (1272 perm/sec)   p_kst 8.406897e-04   p_cons 9.510248e-01   p_joint 3.549655e-03

Joint ci ratio: 5.441092e-02	ci left: 3.446061e-03	ci right 3.639478e-03	k: 5171	n:1460000
Cons ci ratio: 7.364752e-04	ci left: 9.506404e-01	ci right 9.513414e-01	k: 1388448	n:1460000
KS ci ratio: 1.117250e-01	ci left: 7.953890e-04	ci right 8.901708e-04	k: 1229	n:1460000
CDC42EP1   1460000 perm   1154 sec   (1265 perm/sec)   p_kst 8.417808e-04   p_cons 9.509918e-01   p_joint 3.541781e-03

Joint ci ratio: 5.602716e-02	ci left: 3.226040e-03	ci right 3.412660e-03	k: 4878	n:1470000
Cons ci ratio: 7.341422e-04	ci left: 9.506191e-01	ci right 9.513179e-01	k: 1397925	n:1470000
KS ci ratio: 1.113634e-01	ci left: 7.952685e-04	ci right 8.897091e-04	k: 1237	n:1470000
CDC42EP1   1470000 perm   1168 sec   (1259 perm/sec)   p_kst 8.414966e-04   p_cons 9.509694e-01   p_joint 3.318367e-03

Joint ci ratio: 5.583294e-02	ci left: 3.226894e-03	ci right 3.412896e-03	k: 4912	n:1480000
Cons ci ratio: 7.315554e-04	ci left: 9.506334e-01	ci right 9.513297e-01	k: 1407454	n:1480000
KS ci ratio: 1.109163e-01	ci left: 7.964640e-04	ci right 8.906421e-04	k: 1247	n:1480000
CDC42EP1   1480000 perm   1182 sec   (1253 perm/sec)   p_kst 8.425676e-04   p_cons 9.509824e-01   p_joint 3.318919e-03

Joint ci ratio: 5.568027e-02	ci left: 3.223105e-03	ci right 3.408364e-03	k: 4939	n:1490000
Cons ci ratio: 7.291322e-04	ci left: 9.506300e-01	ci right 9.513240e-01	k: 1416957	n:1490000
KS ci ratio: 1.104745e-01	ci left: 7.976443e-04	ci right 8.915617e-04	k: 1257	n:1490000
CDC42EP1   1490000 perm   1196 sec   (1246 perm/sec)   p_kst 8.436242e-04   p_cons 9.509779e-01   p_joint 3.314765e-03

Joint ci ratio: 5.546166e-02	ci left: 3.227256e-03	ci right 3.412003e-03	k: 4978	n:1500000
Cons ci ratio: 7.267485e-04	ci left: 9.506246e-01	ci right 9.513163e-01	k: 1426457	n:1500000
KS ci ratio: 1.100814e-01	ci left: 7.981611e-04	ci right 8.917834e-04	k: 1266	n:1500000
CDC42EP1   1500000 perm   1210 sec   (1240 perm/sec)   p_kst 8.440000e-04   p_cons 9.509713e-01   p_joint 3.318667e-03

Joint ci ratio: 5.527325e-02	ci left: 3.228089e-03	ci right 3.412235e-03	k: 5012	n:1510000
Cons ci ratio: 7.242851e-04	ci left: 9.506326e-01	ci right 9.513220e-01	k: 1435977	n:1510000
KS ci ratio: 1.096066e-01	ci left: 7.999600e-04	ci right 8.933623e-04	k: 1277	n:1510000
CDC42EP1   1510000 perm   1225 sec   (1233 perm/sec)   p_kst 8.456954e-04   p_cons 9.509781e-01   p_joint 3.319205e-03

Joint ci ratio: 5.509769e-02	ci left: 3.227613e-03	ci right 3.411129e-03	k: 5044	n:1520000
Cons ci ratio: 7.221012e-04	ci left: 9.506075e-01	ci right 9.512948e-01	k: 1445447	n:1520000
KS ci ratio: 1.091802e-01	ci left: 8.010961e-04	ci right 8.942438e-04	k: 1287	n:1520000
CDC42EP1   1520000 perm   1239 sec   (1227 perm/sec)   p_kst 8.467105e-04   p_cons 9.509520e-01   p_joint 3.318421e-03

Joint ci ratio: 5.497271e-02	ci left: 3.221343e-03	ci right 3.404074e-03	k: 5067	n:1530000
Cons ci ratio: 7.200729e-04	ci left: 9.505650e-01	ci right 9.512503e-01	k: 1454890	n:1530000
KS ci ratio: 1.090535e-01	ci left: 7.977673e-04	ci right 8.904134e-04	k: 1290	n:1530000
CDC42EP1   1530000 perm   1254 sec   (1220 perm/sec)   p_kst 8.431373e-04   p_cons 9.509085e-01   p_joint 3.311765e-03

Joint ci ratio: 5.482697e-02	ci left: 3.217717e-03	ci right 3.399743e-03	k: 5094	n:1540000
Cons ci ratio: 7.177615e-04	ci left: 9.505621e-01	ci right 9.512453e-01	k: 1464393	n:1540000
KS ci ratio: 1.087172e-01	ci left: 7.976403e-04	ci right 8.899678e-04	k: 1298	n:1540000
CDC42EP1   1540000 perm   1269 sec   (1213 perm/sec)   p_kst 8.428571e-04   p_cons 9.509045e-01   p_joint 3.307792e-03

Joint ci ratio: 5.457558e-02	ci left: 3.226866e-03	ci right 3.408546e-03	k: 5141	n:1550000
Cons ci ratio: 7.155712e-04	ci left: 9.505464e-01	ci right 9.512274e-01	k: 1473876	n:1550000
KS ci ratio: 1.082597e-01	ci left: 7.993985e-04	ci right 8.915153e-04	k: 1309	n:1550000
CDC42EP1   1550000 perm   1284 sec   (1207 perm/sec)   p_kst 8.445161e-04   p_cons 9.508877e-01   p_joint 3.316774e-03

Joint ci ratio: 5.442240e-02	ci left: 3.224517e-03	ci right 3.405539e-03	k: 5170	n:1560000
Cons ci ratio: 7.130237e-04	ci left: 9.505803e-01	ci right 9.512590e-01	k: 1483436	n:1560000
KS ci ratio: 1.080538e-01	ci left: 7.973926e-04	ci right 8.890923e-04	k: 1314	n:1560000
CDC42EP1   1560000 perm   1299 sec   (1201 perm/sec)   p_kst 8.423077e-04   p_cons 9.509205e-01   p_joint 3.314103e-03

Joint ci ratio: 5.426527e-02	ci left: 3.222828e-03	ci right 3.403216e-03	k: 5200	n:1570000
Cons ci ratio: 7.106823e-04	ci left: 9.505903e-01	ci right 9.512667e-01	k: 1492959	n:1570000
KS ci ratio: 1.077674e-01	ci left: 7.966519e-04	ci right 8.880082e-04	k: 1321	n:1570000
CDC42EP1   1570000 perm   1314 sec   (1195 perm/sec)   p_kst 8.414013e-04   p_cons 9.509293e-01   p_joint 3.312102e-03

Joint ci ratio: 5.409912e-02	ci left: 3.222409e-03	ci right 3.402204e-03	k: 5232	n:1580000
Cons ci ratio: 7.084744e-04	ci left: 9.505854e-01	ci right 9.512598e-01	k: 1502459	n:1580000
KS ci ratio: 1.074832e-01	ci left: 7.959209e-04	ci right 8.869375e-04	k: 1328	n:1580000
CDC42EP1   1580000 perm   1329 sec   (1189 perm/sec)   p_kst 8.405063e-04   p_cons 9.509234e-01   p_joint 3.311392e-03

Joint ci ratio: 5.223006e-02	ci left: 3.437969e-03	ci right 3.622966e-03	k: 5612	n:1590000
Cons ci ratio: 7.062631e-04	ci left: 9.505838e-01	ci right 9.512560e-01	k: 1511964	n:1590000
KS ci ratio: 1.072415e-01	ci left: 7.945873e-04	ci right 8.852342e-04	k: 1334	n:1590000
CDC42EP1   1590000 perm   1344 sec   (1183 perm/sec)   p_kst 8.389937e-04   p_cons 9.509208e-01   p_joint 3.529560e-03

Joint ci ratio: 5.206335e-02	ci left: 3.438689e-03	ci right 3.623115e-03	k: 5648	n:1600000
Cons ci ratio: 7.041949e-04	ci left: 9.505659e-01	ci right 9.512362e-01	k: 1521443	n:1600000
KS ci ratio: 1.067626e-01	ci left: 7.969205e-04	ci right 8.874020e-04	k: 1346	n:1600000
CDC42EP1   1600000 perm   1359 sec   (1177 perm/sec)   p_kst 8.412500e-04   p_cons 9.509019e-01   p_joint 3.530000e-03

Joint ci ratio: 5.188908e-02	ci left: 3.440626e-03	ci right 3.624521e-03	k: 5686	n:1610000
Cons ci ratio: 7.021541e-04	ci left: 9.505470e-01	ci right 9.512153e-01	k: 1530920	n:1610000
KS ci ratio: 1.064077e-01	ci left: 7.974117e-04	ci right 8.876292e-04	k: 1355	n:1610000
CDC42EP1   1610000 perm   1375 sec   (1171 perm/sec)   p_kst 8.416149e-04   p_cons 9.508820e-01   p_joint 3.531677e-03

Joint ci ratio: 5.171654e-02	ci left: 3.442541e-03	ci right 3.625908e-03	k: 5724	n:1620000
Cons ci ratio: 7.000336e-04	ci left: 9.505414e-01	ci right 9.512076e-01	k: 1540418	n:1620000
KS ci ratio: 1.059399e-01	ci left: 7.997002e-04	ci right 8.897540e-04	k: 1367	n:1620000
CDC42EP1   1620000 perm   1390 sec   (1166 perm/sec)   p_kst 8.438272e-04   p_cons 9.508753e-01   p_joint 3.533333e-03

Joint ci ratio: 5.159515e-02	ci left: 3.437771e-03	ci right 3.620441e-03	k: 5751	n:1630000
Cons ci ratio: 6.977855e-04	ci left: 9.505555e-01	ci right 9.512196e-01	k: 1549948	n:1630000
KS ci ratio: 1.057855e-01	ci left: 7.971830e-04	ci right 8.868144e-04	k: 1371	n:1630000
CDC42EP1   1630000 perm   1405 sec   (1160 perm/sec)   p_kst 8.411043e-04   p_cons 9.508883e-01   p_joint 3.528221e-03

Joint ci ratio: 5.148802e-02	ci left: 3.431255e-03	ci right 3.613189e-03	k: 5775	n:1640000
Cons ci ratio: 6.957134e-04	ci left: 9.505486e-01	ci right 9.512108e-01	k: 1559444	n:1640000
KS ci ratio: 1.055167e-01	ci left: 7.964776e-04	ci right 8.857881e-04	k: 1378	n:1640000
CDC42EP1   1640000 perm   1421 sec   (1154 perm/sec)   p_kst 8.402439e-04   p_cons 9.508805e-01   p_joint 3.521341e-03

Joint ci ratio: 5.133717e-02	ci left: 3.430800e-03	ci right 3.612161e-03	k: 5809	n:1650000
Cons ci ratio: 6.937675e-04	ci left: 9.505273e-01	ci right 9.511875e-01	k: 1568916	n:1650000
KS ci ratio: 1.049849e-01	ci left: 7.999120e-04	ci right 8.891277e-04	k: 1392	n:1650000
CDC42EP1   1650000 perm   1437 sec   (1148 perm/sec)   p_kst 8.436364e-04   p_cons 9.508582e-01   p_joint 3.520606e-03

Joint ci ratio: 5.116567e-02	ci left: 3.433326e-03	ci right 3.614196e-03	k: 5848	n:1660000
Cons ci ratio: 6.916818e-04	ci left: 9.505273e-01	ci right 9.511856e-01	k: 1578423	n:1660000
KS ci ratio: 1.044983e-01	ci left: 8.027195e-04	ci right 8.918078e-04	k: 1405	n:1660000
CDC42EP1   1660000 perm   1453 sec   (1142 perm/sec)   p_kst 8.463855e-04   p_cons 9.508572e-01   p_joint 3.522892e-03

Joint ci ratio: 5.105247e-02	ci left: 3.428137e-03	ci right 3.608322e-03	k: 5874	n:1670000
Cons ci ratio: 6.895572e-04	ci left: 9.505352e-01	ci right 9.511914e-01	k: 1587943	n:1670000
KS ci ratio: 1.042023e-01	ci left: 8.025782e-04	ci right 8.913831e-04	k: 1413	n:1670000
CDC42EP1   1670000 perm   1469 sec   (1137 perm/sec)   p_kst 8.461078e-04   p_cons 9.508641e-01   p_joint 3.517365e-03

Joint ci ratio: 5.086654e-02	ci left: 3.433000e-03	ci right 3.612765e-03	k: 5917	n:1680000
Cons ci ratio: 6.874040e-04	ci left: 9.505495e-01	ci right 9.512037e-01	k: 1597474	n:1680000
KS ci ratio: 1.039820e-01	ci left: 8.012794e-04	ci right 8.897416e-04	k: 1419	n:1680000
CDC42EP1   1680000 perm   1485 sec   (1131 perm/sec)   p_kst 8.446429e-04   p_cons 9.508774e-01   p_joint 3.522024e-03

Joint ci ratio: 5.069970e-02	ci left: 3.435471e-03	ci right 3.614758e-03	k: 5956	n:1690000
Cons ci ratio: 6.854400e-04	ci left: 9.505405e-01	ci right 9.511929e-01	k: 1606966	n:1690000
KS ci ratio: 1.037631e-01	ci left: 7.999961e-04	ci right 8.881194e-04	k: 1425	n:1690000
CDC42EP1   1690000 perm   1501 sec   (1126 perm/sec)   p_kst 8.431953e-04   p_cons 9.508675e-01   p_joint 3.524260e-03

Joint ci ratio: 5.050913e-02	ci left: 3.441398e-03	ci right 3.620300e-03	k: 6001	n:1700000
Cons ci ratio: 6.834497e-04	ci left: 9.505375e-01	ci right 9.511880e-01	k: 1616468	n:1700000
KS ci ratio: 1.032214e-01	ci left: 8.038855e-04	ci right 8.919469e-04	k: 1440	n:1700000
CDC42EP1   1700000 perm   1517 sec   (1120 perm/sec)   p_kst 8.470588e-04   p_cons 9.508635e-01   p_joint 3.530000e-03

Joint ci ratio: 5.035833e-02	ci left: 3.442060e-03	ci right 3.620447e-03	k: 6037	n:1710000
Cons ci ratio: 6.814980e-04	ci left: 9.505317e-01	ci right 9.511802e-01	k: 1625965	n:1710000
KS ci ratio: 1.028296e-01	ci left: 8.054514e-04	ci right 8.933293e-04	k: 1451	n:1710000
CDC42EP1   1710000 perm   1533 sec   (1115 perm/sec)   p_kst 8.485380e-04   p_cons 9.508567e-01   p_joint 3.530409e-03

Joint ci ratio: 5.025039e-02	ci left: 3.436974e-03	ci right 3.614704e-03	k: 6063	n:1720000
Cons ci ratio: 6.795418e-04	ci left: 9.505288e-01	ci right 9.511755e-01	k: 1635467	n:1720000
KS ci ratio: 1.026531e-01	ci left: 8.036008e-04	ci right 8.911172e-04	k: 1456	n:1720000
CDC42EP1   1720000 perm   1549 sec   (1110 perm/sec)   p_kst 8.465116e-04   p_cons 9.508529e-01   p_joint 3.525000e-03

Joint ci ratio: 5.008128e-02	ci left: 3.440509e-03	ci right 3.617806e-03	k: 6104	n:1730000
Cons ci ratio: 6.773634e-04	ci left: 9.505590e-01	ci right 9.512037e-01	k: 1645026	n:1730000
KS ci ratio: 1.023725e-01	ci left: 8.034615e-04	ci right 8.907090e-04	k: 1464	n:1730000
CDC42EP1   1730000 perm   1566 sec   (1105 perm/sec)   p_kst 8.462428e-04   p_cons 9.508821e-01   p_joint 3.528324e-03

Joint ci ratio: 4.992203e-02	ci left: 3.442870e-03	ci right 3.619708e-03	k: 6143	n:1740000
Cons ci ratio: 6.754549e-04	ci left: 9.505543e-01	ci right 9.511971e-01	k: 1654525	n:1740000
KS ci ratio: 1.019902e-01	ci left: 8.050042e-04	ci right 8.920733e-04	k: 1475	n:1740000
CDC42EP1   1740000 perm   1582 sec   (1100 perm/sec)   p_kst 8.477011e-04   p_cons 9.508764e-01   p_joint 3.530460e-03

Joint ci ratio: 4.978044e-02	ci left: 3.442947e-03	ci right 3.619273e-03	k: 6178	n:1750000
Cons ci ratio: 6.735089e-04	ci left: 9.505570e-01	ci right 9.511980e-01	k: 1664037	n:1750000
KS ci ratio: 1.016807e-01	ci left: 8.054160e-04	ci right 8.922495e-04	k: 1484	n:1750000
CDC42EP1   1750000 perm   1599 sec   (1095 perm/sec)   p_kst 8.480000e-04   p_cons 9.508783e-01   p_joint 3.530286e-03

Joint ci ratio: 4.965610e-02	ci left: 3.440780e-03	ci right 3.616542e-03	k: 6209	n:1760000
Cons ci ratio: 6.716246e-04	ci left: 9.505535e-01	ci right 9.511927e-01	k: 1673538	n:1760000
KS ci ratio: 1.014419e-01	ci left: 8.047160e-04	ci right 8.912582e-04	k: 1491	n:1760000
CDC42EP1   1760000 perm   1616 sec   (1089 perm/sec)   p_kst 8.471591e-04   p_cons 9.508739e-01   p_joint 3.527841e-03

Joint ci ratio: 4.953268e-02	ci left: 3.438637e-03	ci right 3.613841e-03	k: 6240	n:1770000
Cons ci ratio: 6.696871e-04	ci left: 9.505597e-01	ci right 9.511970e-01	k: 1683056	n:1770000
KS ci ratio: 1.013402e-01	ci left: 8.018215e-04	ci right 8.879608e-04	k: 1494	n:1770000
CDC42EP1   1770000 perm   1632 sec   (1085 perm/sec)   p_kst 8.440678e-04   p_cons 9.508791e-01   p_joint 3.525424e-03

Joint ci ratio: 4.941018e-02	ci left: 3.436519e-03	ci right 3.611170e-03	k: 6271	n:1780000
Cons ci ratio: 6.677824e-04	ci left: 9.505635e-01	ci right 9.511991e-01	k: 1692570	n:1780000
KS ci ratio: 1.012051e-01	ci left: 7.995071e-04	ci right 8.852764e-04	k: 1498	n:1780000
CDC42EP1   1780000 perm   1649 sec   (1080 perm/sec)   p_kst 8.415730e-04   p_cons 9.508820e-01   p_joint 3.523034e-03

Joint ci ratio: 4.928466e-02	ci left: 3.434977e-03	ci right 3.609093e-03	k: 6303	n:1790000
Cons ci ratio: 6.659257e-04	ci left: 9.505628e-01	ci right 9.511966e-01	k: 1702076	n:1790000
KS ci ratio: 1.009696e-01	ci left: 7.988523e-04	ci right 8.843402e-04	k: 1505	n:1790000
CDC42EP1   1790000 perm   1665 sec   (1075 perm/sec)   p_kst 8.407821e-04   p_cons 9.508804e-01   p_joint 3.521229e-03

Joint ci ratio: 4.913286e-02	ci left: 3.437294e-03	ci right 3.610976e-03	k: 6342	n:1800000
Cons ci ratio: 6.642029e-04	ci left: 9.505454e-01	ci right 9.511775e-01	k: 1711552	n:1800000
KS ci ratio: 1.006692e-01	ci left: 7.992882e-04	ci right 8.845532e-04	k: 1514	n:1800000
CDC42EP1   1800000 perm   1682 sec   (1070 perm/sec)   p_kst 8.411111e-04   p_cons 9.508622e-01   p_joint 3.523333e-03

Joint ci ratio: 4.899787e-02	ci left: 3.437403e-03	ci right 3.610600e-03	k: 6377	n:1810000
Cons ci ratio: 6.624227e-04	ci left: 9.505382e-01	ci right 9.511686e-01	k: 1721046	n:1810000
KS ci ratio: 1.003715e-01	ci left: 7.997196e-04	ci right 8.847635e-04	k: 1523	n:1810000
CDC42EP1   1810000 perm   1699 sec   (1065 perm/sec)   p_kst 8.414365e-04   p_cons 9.508541e-01   p_joint 3.523204e-03

Joint ci ratio: 4.884487e-02	ci left: 3.440226e-03	ci right 3.613008e-03	k: 6417	n:1820000
Cons ci ratio: 6.605675e-04	ci left: 9.505438e-01	ci right 9.511724e-01	k: 1730563	n:1820000
KS ci ratio: 9.988101e-02	ci left: 8.033610e-04	ci right 8.883501e-04	k: 1538	n:1820000
CDC42EP1   1820000 perm   1717 sec   (1060 perm/sec)   p_kst 8.450549e-04   p_cons 9.508588e-01   p_joint 3.525824e-03

Outputting figure to mutsig2_images.part000000000034/CDC42EP1.2_1184_1820000_0.00084505_0.95086_0.0035258.png
                gene_name: CDC42EP1
               theta_stop: 0.100 
                    nperm: 1820000 
                     p_ks: 0.00085 
        ci_ks_bounds_left: 0.00080 
       ci_ks_bounds_right: 0.00089 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.0035 
     ci_joint_bounds_left: 0.0034 
    ci_joint_bounds_right: 0.0036 

Current progress: 92 percent done.
CDC42EP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.079305e-02	ci left: 9.244098e-01	ci right 9.345383e-01	k: 9296	n:10000
Cons ci ratio: 3.043253e-02	ci left: 6.143208e-01	ci right 6.334069e-01	k: 6239	n:10000
KS ci ratio: 7.235652e-02	ci left: 2.186229e-01	ci right 2.351365e-01	k: 2268	n:10000
CDC42EP3   10000 perm   1 sec   (7125 perm/sec)   p_kst 2.268000e-01   p_cons 6.239000e-01   p_joint 9.296000e-01

Outputting figure to mutsig2_images.part000000000034/CDC42EP3.2_769_10000_0.2268_0.6239_0.9296.png
                gene_name: CDC42EP3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 93 percent done.
CDC5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
KS ci ratio: 8.809519e-03	ci left: 9.476267e-01	ci right 9.561076e-01	k: 9520	n:10000
CDC5L   10000 perm   2 sec   (5790 perm/sec)   p_kst 9.520000e-01   p_cons 1.789000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CDC5L.2_2473_10000_0.952_0.1789_1.png
                gene_name: CDC5L
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
CDCA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.848497e-02	ci left: 6.449852e-01	ci right 6.637248e-01	k: 6544	n:10000
KS ci ratio: 2.641468e-02	ci left: 6.785132e-01	ci right 6.967774e-01	k: 6877	n:10000
CDCA4   10000 perm   1 sec   (7011 perm/sec)   p_kst 6.877000e-01   p_cons 6.544000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000034/CDCA4.2_730_10000_0.6877_0.6544_1.png
                gene_name: CDCA4
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
CDCA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.798050e-02	ci left: 8.186283e-01	ci right 8.335812e-01	k: 8262	n:10000
Cons ci ratio: 8.661395e-02	ci left: 1.625864e-01	ci right 1.774064e-01	k: 1699	n:10000
KS ci ratio: 1.854737e-02	ci left: 8.093811e-01	ci right 8.246338e-01	k: 8171	n:10000
CDCA7   10000 perm   2 sec   (6434 perm/sec)   p_kst 8.171000e-01   p_cons 1.699000e-01   p_joint 8.262000e-01

Outputting figure to mutsig2_images.part000000000034/CDCA7.2_1393_10000_0.8171_0.1699_0.8262.png
                gene_name: CDCA7
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 98 percent done.
CDCP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.616784e-02	ci left: 5.302713e-01	ci right 5.499054e-01	k: 5401	n:10000
Cons ci ratio: 4.914966e-02	ci left: 3.791296e-01	ci right 3.983352e-01	k: 3887	n:10000
KS ci ratio: 4.120495e-02	ci left: 4.651709e-01	ci right 4.848436e-01	k: 4750	n:10000
CDCP1   10000 perm   2 sec   (5849 perm/sec)   p_kst 4.750000e-01   p_cons 3.887000e-01   p_joint 5.401000e-01

Outputting figure to mutsig2_images.part000000000034/CDCP1.2_2555_10000_0.475_0.3887_0.5401.png
                gene_name: CDCP1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000034
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 34 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 9893878: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000035> was used as the working directory.
Started at Sat Oct  6 00:02:10 2012
Results reported at Sat Oct  6 00:09:17 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000035.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000035.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 35  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000035.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    411.81 sec.
    Max Memory :      3645 MB
    Max Swap   :      5968 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
35
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 35
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 35: processing genes 3066 - 3155
Calculating significance of each gene.
Using projection method.
3066	CDH23	9.431301e-01
3067	CDH24	3.753002e-01
3068	CDH26	2.726803e-02
In gene CDH3 the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 2435    n = 1	mu =   4.60e-07
3069	CDH3	4.567259e-01
3070	CDH4	2.240514e-01
3071	CDH5	9.468004e-01
3072	CDH6	1.633825e-01
3073	CDH7	6.303919e-01
3074	CDH8	1.472449e-05
3075	CDH9	1.052544e-05
3076	CDHR1	7.642102e-01
3077	CDHR2	9.794519e-01
3078	CDHR3	9.426714e-01
3079	CDHR5	5.755178e-01
3080	CDIPT	1
3081	CDK1	5.967446e-01
3082	CDK10	1
3083	CDK11A	8.874200e-01
3084	CDK11B	5.139760e-01
3085	CDK12	3.888289e-01
3086	CDK13	7.498835e-01
3087	CDK14	7.188089e-03
3088	CDK15	6.218125e-01
3089	CDK16	9.214087e-01
3090	CDK17	3.065713e-01
3091	CDK18	9.422819e-01
3092	CDK19	4.266134e-01
3093	CDK2	2.139289e-01
3094	CDK20	3.820180e-01
3095	CDK2AP1	1
3096	CDK2AP2	1
3097	CDK3	2.235921e-01
3098	CDK4	1.686862e-01
3099	CDK5	1
3100	CDK5R1	7.431366e-01
3101	CDK5R2	1
3102	CDK5RAP1	4.232452e-01
3103	CDK5RAP2	9.442720e-01
3104	CDK5RAP3	8.383808e-01
3105	CDK6	8.424394e-01
3106	CDK7	7.557881e-01
3107	CDK8	8.987563e-01
3108	CDK9	7.187084e-01
3109	CDKAL1	1.520629e-01
3110	CDKL1	4.376421e-01
3111	CDKL2	1.896694e-01
3112	CDKL3	4.953262e-01
3113	CDKL4	4.506449e-01
3114	CDKL5	2.605556e-01
3115	CDKN1A	5.192474e-01
3116	CDKN1B	3.150108e-02
3117	CDKN2A	6.094239e-01
3118	CDKN2AIP	7.191367e-01
3119	CDKN2AIPNL	1
3120	CDKN2B	1
3121	CDKN2C	5.365893e-01
3122	CDKN2D	1
3123	CDKN3	1
3124	CDNF	1.519430e-01
3125	CDO1	3.243978e-01
3126	CDON	1.590279e-03
3127	CDR1	1.203048e-01
3128	CDR2	6.332593e-01
3129	CDR2L	4.494302e-01
3130	CDRT1	6.836298e-01
3131	CDRT15	4.496718e-01
3132	CDRT4	1
3133	CDS1	3.896651e-01
3134	CDS2	1.885433e-01
3135	CDSN	9.326753e-01
3136	CDT1	1
3137	CDV3	1
3138	CDX1	1
3139	CDX2	6.736032e-01
3140	CDX4	1
3141	CDYL	4.121882e-01
3142	CDYL2	5.459494e-01
3143	CEACAM1	8.200135e-01
3144	CEACAM16	5.774517e-01
3145	CEACAM18	2.686330e-01
3146	CEACAM19	3.213970e-01
3147	CEACAM20	2.129711e-01
3148	CEACAM21	1.768491e-01
3149	CEACAM3	4.393177e-01
3150	CEACAM4	2.200589e-01
3151	CEACAM5	9.293924e-01
3152	CEACAM6	1
3153	CEACAM7	5.357556e-01
3154	CEACAM8	5.570131e-01
3155	CEBPB	1
Done

Running MutSig 2:
Scatter job 35: processing genes 3066 - 3155
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CDH9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.164895e-02	ci left: 3.559523e-01	ci right 3.749262e-01	k: 3654	n:10000
Cons ci ratio: 2.452937e-02	ci left: 7.096736e-01	ci right 7.273989e-01	k: 7186	n:10000
KS ci ratio: 7.543835e-02	ci left: 2.045169e-01	ci right 2.206509e-01	k: 2125	n:10000
CDH9   10000 perm   2 sec   (5223 perm/sec)   p_kst 2.125000e-01   p_cons 7.186000e-01   p_joint 3.654000e-01

Outputting figure to mutsig2_images.part000000000035/CDH9.21_2414_10000_0.2125_0.7186_0.3654.png
                gene_name: CDH9
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 2 percent done.
CDH23
Processing conservation and coverage...
92% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.698263e-02	ci left: 8.347018e-01	ci right 8.490984e-01	k: 8420	n:10000
Cons ci ratio: 7.357380e-02	ci left: 2.128999e-01	ci right 2.292629e-01	k: 2210	n:10000
KS ci ratio: 9.936231e-03	ci left: 9.348550e-01	ci right 9.442869e-01	k: 9397	n:10000
CDH23   10000 perm   3 sec   (3854 perm/sec)   p_kst 9.397000e-01   p_cons 2.210000e-01   p_joint 8.420000e-01

Outputting figure to mutsig2_images.part000000000035/CDH23.15_10761_10000_0.9397_0.221_0.842.png
                gene_name: CDH23
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 4 percent done.
CDH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.339316e-01	ci left: 7.359257e-02	ci right 8.425426e-02	k: 788	n:10000
Cons ci ratio: 3.223702e-02	ci left: 5.868075e-01	ci right 6.061363e-01	k: 5965	n:10000
KS ci ratio: 1.801579e-01	ci left: 4.111563e-02	ci right 4.935192e-02	k: 451	n:10000
CDH8   10000 perm   2 sec   (5642 perm/sec)   p_kst 4.510000e-02   p_cons 5.965000e-01   p_joint 7.880000e-02

Joint ci ratio: 9.147201e-02	ci left: 8.024030e-02	ci right 8.798112e-02	k: 1681	n:20000
Cons ci ratio: 2.296475e-02	ci left: 5.861032e-01	ci right 5.997698e-01	k: 11859	n:20000
KS ci ratio: 1.246042e-01	ci left: 4.420494e-02	ci right 5.012760e-02	k: 942	n:20000
CDH8   20000 perm   4 sec   (5117 perm/sec)   p_kst 4.710000e-02   p_cons 5.929500e-01   p_joint 8.405000e-02

Joint ci ratio: 7.267677e-02	ci left: 8.517822e-02	ci right 9.163508e-02	k: 2651	n:30000
Cons ci ratio: 1.875293e-02	ci left: 5.873151e-01	ci right 5.984669e-01	k: 17787	n:30000
KS ci ratio: 9.816841e-02	ci left: 4.798397e-02	ci right 5.297021e-02	k: 1513	n:30000
CDH8   30000 perm   6 sec   (4816 perm/sec)   p_kst 5.043333e-02   p_cons 5.929000e-01   p_joint 8.836667e-02

Outputting figure to mutsig2_images.part000000000035/CDH8.15_2444_30000_0.050433_0.5929_0.088367.png
                gene_name: CDH8
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.092 

Current progress: 6 percent done.
CDON
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.649413e-03	ci left: 9.595321e-01	ci right 9.669949e-01	k: 9634	n:10000
KS ci ratio: 2.694478e-02	ci left: 6.698493e-01	ci right 6.882463e-01	k: 6791	n:10000
CDON   10000 perm   2 sec   (5325 perm/sec)   p_kst 6.791000e-01   p_cons 9.634000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDON.14_3871_10000_0.6791_0.9634_1.png
                gene_name: CDON
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
CDH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.207744e-01	ci left: 8.951617e-02	ci right 1.011208e-01	k: 952	n:10000
Cons ci ratio: 3.061433e-02	ci left: 6.115078e-01	ci right 6.306216e-01	k: 6211	n:10000
KS ci ratio: 2.086194e-01	ci left: 3.053425e-02	ci right 3.774046e-02	k: 340	n:10000
CDH4   10000 perm   2 sec   (5857 perm/sec)   p_kst 3.400000e-02   p_cons 6.211000e-01   p_joint 9.520000e-02

Joint ci ratio: 9.207096e-02	ci left: 7.926130e-02	ci right 8.696041e-02	k: 1661	n:20000
Cons ci ratio: 2.166017e-02	ci left: 6.140838e-01	ci right 6.275811e-01	k: 12417	n:20000
KS ci ratio: 1.477441e-01	ci left: 3.148306e-02	ci right 3.655359e-02	k: 679	n:20000
CDH4   20000 perm   4 sec   (5299 perm/sec)   p_kst 3.395000e-02   p_cons 6.208500e-01   p_joint 8.305000e-02

Joint ci ratio: 8.300312e-02	ci left: 6.632057e-02	ci right 7.209653e-02	k: 2075	n:30000
Cons ci ratio: 1.707440e-02	ci left: 6.317964e-01	ci right 6.427104e-01	k: 19118	n:30000
KS ci ratio: 1.166102e-01	ci left: 3.417948e-02	ci right 3.844426e-02	k: 1088	n:30000
CDH4   30000 perm   6 sec   (5081 perm/sec)   p_kst 3.626667e-02   p_cons 6.372667e-01   p_joint 6.916667e-02

Joint ci ratio: 7.174393e-02	ci left: 6.695295e-02	ci right 7.195977e-02	k: 2777	n:40000
Cons ci ratio: 1.476193e-02	ci left: 6.333182e-01	ci right 6.427618e-01	k: 25522	n:40000
KS ci ratio: 1.009877e-01	ci left: 3.446392e-02	ci right 3.815379e-02	k: 1451	n:40000
CDH4   40000 perm   8 sec   (4932 perm/sec)   p_kst 3.627500e-02   p_cons 6.380500e-01   p_joint 6.942500e-02

Joint ci ratio: 6.276794e-02	ci left: 7.008424e-02	ci right 7.464556e-02	k: 3617	n:50000
Cons ci ratio: 1.314899e-02	ci left: 6.357346e-01	ci right 6.441692e-01	k: 31998	n:50000
KS ci ratio: 9.089960e-02	ci left: 3.422762e-02	ci right 3.750655e-02	k: 1792	n:50000
CDH4   50000 perm   10 sec   (4805 perm/sec)   p_kst 3.584000e-02   p_cons 6.399600e-01   p_joint 7.234000e-02

Outputting figure to mutsig2_images.part000000000035/CDH4.11_2815_50000_0.03584_0.63996_0.07234.png
                gene_name: CDH4
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.075 

Current progress: 9 percent done.
CDH26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.737120e-02	ci left: 5.139556e-01	ci right 5.336306e-01	k: 5238	n:10000
Cons ci ratio: 5.097653e-02	ci left: 3.620179e-01	ci right 3.810570e-01	k: 3715	n:10000
KS ci ratio: 5.206347e-02	ci left: 3.522739e-01	ci right 3.712067e-01	k: 3617	n:10000
CDH26   10000 perm   2 sec   (6034 perm/sec)   p_kst 3.617000e-01   p_cons 3.715000e-01   p_joint 5.238000e-01

Outputting figure to mutsig2_images.part000000000035/CDH26.8_2593_10000_0.3617_0.3715_0.5238.png
                gene_name: CDH26
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 11 percent done.
CDK12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.233591e-02	ci left: 2.187216e-01	ci right 2.352378e-01	k: 2269	n:10000
Cons ci ratio: 9.011761e-02	ci left: 1.518829e-01	ci right 1.663162e-01	k: 1590	n:10000
KS ci ratio: 1.123029e-01	ci left: 1.024689e-01	ci right 1.147601e-01	k: 1085	n:10000
CDK12   10000 perm   2 sec   (5239 perm/sec)   p_kst 1.085000e-01   p_cons 1.590000e-01   p_joint 2.269000e-01

Joint ci ratio: 6.430145e-02	ci left: 1.516378e-01	ci right 1.617622e-01	k: 3133	n:20000
Cons ci ratio: 6.301864e-02	ci left: 1.569674e-01	ci right 1.672311e-01	k: 3241	n:20000
KS ci ratio: 8.009590e-02	ci left: 1.026501e-01	ci right 1.112645e-01	k: 2138	n:20000
CDK12   20000 perm   4 sec   (4757 perm/sec)   p_kst 1.069000e-01   p_cons 1.620500e-01   p_joint 1.566500e-01

Outputting figure to mutsig2_images.part000000000035/CDK12.8_4529_20000_0.1069_0.16205_0.15665.png
                gene_name: CDK12
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 13 percent done.
CDH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.936750e-02	ci left: 3.770397e-01	ci right 3.962264e-01	k: 3866	n:10000
Cons ci ratio: 6.328272e-02	ci left: 2.684428e-01	ci right 2.860871e-01	k: 2772	n:10000
KS ci ratio: 4.208251e-02	ci left: 4.546864e-01	ci right 4.743342e-01	k: 4645	n:10000
CDH6   10000 perm   2 sec   (5865 perm/sec)   p_kst 4.645000e-01   p_cons 2.772000e-01   p_joint 3.866000e-01

Outputting figure to mutsig2_images.part000000000035/CDH6.7_2417_10000_0.4645_0.2772_0.3866.png
                gene_name: CDH6
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 15 percent done.
CDK5RAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.017006e-01	ci left: 1.409482e-02	ci right 1.919237e-02	k: 165	n:10000
Cons ci ratio: 9.393873e-02	ci left: 1.412895e-01	ci right 1.553161e-01	k: 1482	n:10000
KS ci ratio: 2.070530e-01	ci left: 3.100901e-02	ci right 3.826537e-02	k: 345	n:10000
CDK5RAP2   10000 perm   2 sec   (5132 perm/sec)   p_kst 3.450000e-02   p_cons 1.482000e-01   p_joint 1.650000e-02

Joint ci ratio: 1.520808e-01	ci left: 2.970034e-02	ci right 3.463690e-02	k: 642	n:20000
Cons ci ratio: 6.576330e-02	ci left: 1.458665e-01	ci right 1.558352e-01	k: 3016	n:20000
KS ci ratio: 1.467418e-01	ci left: 3.191701e-02	ci right 3.701950e-02	k: 688	n:20000
CDK5RAP2   20000 perm   4 sec   (4639 perm/sec)   p_kst 3.440000e-02   p_cons 1.508000e-01   p_joint 3.210000e-02

Joint ci ratio: 1.162782e-01	ci left: 3.437385e-02	ci right 3.864985e-02	k: 1094	n:30000
Cons ci ratio: 5.199165e-02	ci left: 1.551424e-01	ci right 1.634570e-01	k: 4778	n:30000
KS ci ratio: 1.173954e-01	ci left: 3.372600e-02	ci right 3.796450e-02	k: 1074	n:30000
CDK5RAP2   30000 perm   7 sec   (4459 perm/sec)   p_kst 3.580000e-02   p_cons 1.592667e-01   p_joint 3.646667e-02

Joint ci ratio: 9.076769e-02	ci left: 4.252433e-02	ci right 4.659212e-02	k: 1781	n:40000
Cons ci ratio: 4.503882e-02	ci left: 1.556269e-01	ci right 1.628226e-01	k: 6368	n:40000
KS ci ratio: 1.010600e-01	ci left: 3.441514e-02	ci right 3.810258e-02	k: 1449	n:40000
CDK5RAP2   40000 perm   9 sec   (4328 perm/sec)   p_kst 3.622500e-02   p_cons 1.592000e-01   p_joint 4.452500e-02

Joint ci ratio: 8.718444e-02	ci left: 3.716326e-02	ci right 4.057055e-02	k: 1942	n:50000
Cons ci ratio: 4.023068e-02	ci left: 1.563600e-01	ci right 1.627995e-01	k: 7978	n:50000
KS ci ratio: 9.012050e-02	ci left: 3.481451e-02	ci right 3.811959e-02	k: 1822	n:50000
CDK5RAP2   50000 perm   12 sec   (4228 perm/sec)   p_kst 3.644000e-02   p_cons 1.595600e-01   p_joint 3.884000e-02

Outputting figure to mutsig2_images.part000000000035/CDK5RAP2.7_5834_50000_0.03644_0.15956_0.03884.png
                gene_name: CDK5RAP2
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.041 

Current progress: 17 percent done.
CDKL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.360851e-02	ci left: 1.726124e-01	ci right 1.877744e-01	k: 1801	n:10000
Cons ci ratio: 2.245679e-02	ci left: 7.443233e-01	ci right 7.613292e-01	k: 7529	n:10000
KS ci ratio: 1.260329e-01	ci left: 8.261521e-02	ci right 9.382602e-02	k: 881	n:10000
CDKL5   10000 perm   2 sec   (5917 perm/sec)   p_kst 8.810000e-02   p_cons 7.529000e-01   p_joint 1.801000e-01

Joint ci ratio: 6.000629e-02	ci left: 1.705470e-01	ci right 1.811475e-01	k: 3516	n:20000
Cons ci ratio: 1.581545e-02	ci left: 7.483728e-01	ci right 7.603532e-01	k: 15088	n:20000
KS ci ratio: 8.575060e-02	ci left: 9.052910e-02	ci right 9.868920e-02	k: 1891	n:20000
CDKL5   20000 perm   4 sec   (5342 perm/sec)   p_kst 9.455000e-02   p_cons 7.544000e-01   p_joint 1.758000e-01

Outputting figure to mutsig2_images.part000000000035/CDKL5.7_3173_20000_0.09455_0.7544_0.1758.png
                gene_name: CDKL5
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 19 percent done.
CDK13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.931317e-02	ci left: 2.948935e-01	ci right 3.130208e-01	k: 3039	n:10000
Cons ci ratio: 6.969831e-02	ci left: 2.318535e-01	ci right 2.486980e-01	k: 2402	n:10000
KS ci ratio: 8.327051e-02	ci left: 1.737925e-01	ci right 1.889935e-01	k: 1813	n:10000
CDK13   10000 perm   2 sec   (5505 perm/sec)   p_kst 1.813000e-01   p_cons 2.402000e-01   p_joint 3.039000e-01

Outputting figure to mutsig2_images.part000000000035/CDK13.5_4595_10000_0.1813_0.2402_0.3039.png
                gene_name: CDK13
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 21 percent done.
CDK14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.357332e-02	ci left: 7.256263e-01	ci right 7.430370e-01	k: 7344	n:10000
Cons ci ratio: 5.315188e-02	ci left: 3.428323e-01	ci right 3.616539e-01	k: 3522	n:10000
KS ci ratio: 2.971065e-02	ci left: 6.255764e-01	ci right 6.445448e-01	k: 6351	n:10000
CDK14   10000 perm   2 sec   (6312 perm/sec)   p_kst 6.351000e-01   p_cons 3.522000e-01   p_joint 7.344000e-01

Outputting figure to mutsig2_images.part000000000035/CDK14.5_1408_10000_0.6351_0.3522_0.7344.png
                gene_name: CDK14
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 23 percent done.
CDK19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.838079e-01	ci left: 3.948997e-02	ci right 4.757866e-02	k: 434	n:10000
Cons ci ratio: 4.641806e-02	ci left: 4.065144e-01	ci right 4.259345e-01	k: 4162	n:10000
KS ci ratio: 2.521293e-01	ci left: 2.062036e-02	ci right 2.666153e-02	k: 235	n:10000
CDK19   10000 perm   1 sec   (7089 perm/sec)   p_kst 2.350000e-02   p_cons 4.162000e-01   p_joint 4.340000e-02

Joint ci ratio: 1.322969e-01	ci left: 3.926179e-02	ci right 4.487233e-02	k: 840	n:20000
Cons ci ratio: 3.276484e-02	ci left: 4.102539e-01	ci right 4.239703e-01	k: 8342	n:20000
KS ci ratio: 1.771369e-01	ci left: 2.177980e-02	ci right 2.606015e-02	k: 477	n:20000
CDK19   20000 perm   3 sec   (6291 perm/sec)   p_kst 2.385000e-02   p_cons 4.171000e-01   p_joint 4.200000e-02

Joint ci ratio: 9.432627e-02	ci left: 5.186009e-02	ci right 5.702663e-02	k: 1632	n:30000
Cons ci ratio: 2.609472e-02	ci left: 4.236560e-01	ci right 4.348910e-01	k: 12878	n:30000
KS ci ratio: 1.363805e-01	ci left: 2.496955e-02	ci right 2.865619e-02	k: 803	n:30000
CDK19   30000 perm   5 sec   (5924 perm/sec)   p_kst 2.676667e-02   p_cons 4.292667e-01   p_joint 5.440000e-02

Joint ci ratio: 9.360719e-02	ci left: 4.003064e-02	ci right 4.398620e-02	k: 1679	n:40000
Cons ci ratio: 2.264251e-02	ci left: 4.234685e-01	ci right 4.331919e-01	k: 17133	n:40000
KS ci ratio: 1.185076e-01	ci left: 2.504504e-02	ci right 2.822419e-02	k: 1064	n:40000
CDK19   40000 perm   7 sec   (5662 perm/sec)   p_kst 2.660000e-02   p_cons 4.283250e-01   p_joint 4.197500e-02

Joint ci ratio: 7.625378e-02	ci left: 4.828257e-02	ci right 5.212987e-02	k: 2509	n:50000
Cons ci ratio: 2.022519e-02	ci left: 4.246361e-01	ci right 4.333322e-01	k: 21449	n:50000
KS ci ratio: 1.061709e-01	ci left: 2.512918e-02	ci right 2.796615e-02	k: 1326	n:50000
CDK19   50000 perm   9 sec   (5520 perm/sec)   p_kst 2.652000e-02   p_cons 4.289800e-01   p_joint 5.018000e-02

Joint ci ratio: 6.844551e-02	ci left: 5.005645e-02	ci right 5.362039e-02	k: 3109	n:60000
Cons ci ratio: 1.845983e-02	ci left: 4.251015e-01	ci right 4.330386e-01	k: 25744	n:60000
KS ci ratio: 9.622134e-02	ci left: 2.562001e-02	ci right 2.822602e-02	k: 1614	n:60000
CDK19   60000 perm   11 sec   (5399 perm/sec)   p_kst 2.690000e-02   p_cons 4.290667e-01   p_joint 5.181667e-02

Outputting figure to mutsig2_images.part000000000035/CDK19.5_1561_60000_0.0269_0.42907_0.051817.png
                gene_name: CDK19
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.054 

Current progress: 25 percent done.
CDYL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.640311e-02	ci left: 3.164175e-01	ci right 3.348842e-01	k: 3256	n:10000
KS ci ratio: 2.205248e-02	ci left: 7.510997e-01	ci right 7.679489e-01	k: 7596	n:10000
CDYL2   10000 perm   2 sec   (6652 perm/sec)   p_kst 7.596000e-01   p_cons 3.256000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDYL2.5_1549_10000_0.7596_0.3256_1.png
                gene_name: CDYL2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
CDH24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.508155e-02	ci left: 3.268405e-01	ci right 3.454551e-01	k: 3361	n:10000
Cons ci ratio: 2.813322e-02	ci left: 6.506199e-01	ci right 6.692868e-01	k: 6600	n:10000
KS ci ratio: 1.092784e-01	ci left: 1.077365e-01	ci right 1.202894e-01	k: 1139	n:10000
CDH24   10000 perm   2 sec   (6089 perm/sec)   p_kst 1.139000e-01   p_cons 6.600000e-01   p_joint 3.361000e-01

Joint ci ratio: 5.130325e-02	ci left: 2.201197e-01	ci right 2.317601e-01	k: 4518	n:20000
Cons ci ratio: 1.994940e-02	ci left: 6.521313e-01	ci right 6.653225e-01	k: 13175	n:20000
KS ci ratio: 7.838310e-02	ci left: 1.067765e-01	ci right 1.155369e-01	k: 2222	n:20000
CDH24   20000 perm   4 sec   (5493 perm/sec)   p_kst 1.111000e-01   p_cons 6.587500e-01   p_joint 2.259000e-01

Outputting figure to mutsig2_images.part000000000035/CDH24.4_2508_20000_0.1111_0.65875_0.2259.png
                gene_name: CDH24
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 28 percent done.
CDH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.736385e-02	ci left: 8.285951e-01	ci right 8.432086e-01	k: 8360	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CDH3   10000 perm   2 sec   (6276 perm/sec)   p_kst 1   p_cons 8.360000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDH3.4_2554_10000_1_0.836_1.png
                gene_name: CDH3
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
CDH7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.252887e-02	ci left: 3.481986e-01	ci right 3.670844e-01	k: 3576	n:10000
KS ci ratio: 1.540245e-02	ci left: 8.594729e-01	ci right 8.729130e-01	k: 8663	n:10000
CDH7   10000 perm   2 sec   (6255 perm/sec)   p_kst 8.663000e-01   p_cons 3.576000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDH7.4_2402_10000_0.8663_0.3576_1.png
                gene_name: CDH7
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
CDHR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.928904e-02	ci left: 6.322118e-01	ci right 6.511057e-01	k: 6417	n:10000
Cons ci ratio: 2.839688e-02	ci left: 6.463937e-01	ci right 6.651154e-01	k: 6558	n:10000
KS ci ratio: 3.855665e-02	ci left: 4.983503e-01	ci right 5.180449e-01	k: 5082	n:10000
CDHR5   10000 perm   2 sec   (6546 perm/sec)   p_kst 5.082000e-01   p_cons 6.558000e-01   p_joint 6.417000e-01

Outputting figure to mutsig2_images.part000000000035/CDHR5.4_2598_10000_0.5082_0.6558_0.6417.png
                gene_name: CDHR5
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 34 percent done.
CDK17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.486017e-02	ci left: 3.286278e-01	ci right 3.472667e-01	k: 3379	n:10000
KS ci ratio: 2.648848e-02	ci left: 6.773041e-01	ci right 6.955872e-01	k: 6865	n:10000
CDK17   10000 perm   2 sec   (6319 perm/sec)   p_kst 6.865000e-01   p_cons 3.379000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDK17.4_1674_10000_0.6865_0.3379_1.png
                gene_name: CDK17
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
CDKAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.196193e-02	ci left: 7.526172e-01	ci right 7.694305e-01	k: 7611	n:10000
KS ci ratio: 6.760723e-03	ci left: 9.677317e-01	ci right 9.743901e-01	k: 9712	n:10000
CDKAL1   10000 perm   2 sec   (6278 perm/sec)   p_kst 9.712000e-01   p_cons 7.611000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDKAL1.4_1796_10000_0.9712_0.7611_1.png
                gene_name: CDKAL1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
CDKL1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.883601e-03	ci left: 9.354766e-01	ci right 9.448650e-01	k: 9403	n:10000
KS ci ratio: 2.383922e-02	ci left: 7.211824e-01	ci right 7.386835e-01	k: 7300	n:10000
CDKL1   10000 perm   1 sec   (7141 perm/sec)   p_kst 7.300000e-01   p_cons 9.403000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDKL1.3_1113_10000_0.73_0.9403_1.png
                gene_name: CDKL1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
CDKL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.532926e-02	ci left: 3.248548e-01	ci right 3.434420e-01	k: 3341	n:10000
Cons ci ratio: 1.297800e-01	ci left: 7.814990e-02	ci right 8.909410e-02	k: 835	n:10000
KS ci ratio: 1.742078e-02	ci left: 8.276794e-01	ci right 8.423249e-01	k: 8351	n:10000
CDKL2   10000 perm   2 sec   (6567 perm/sec)   p_kst 8.351000e-01   p_cons 8.350000e-02   p_joint 3.341000e-01

Joint ci ratio: 4.701899e-02	ci left: 2.517979e-01	ci right 2.639726e-01	k: 5157	n:20000
Cons ci ratio: 9.007588e-02	ci left: 8.259055e-02	ci right 9.043015e-02	k: 1729	n:20000
KS ci ratio: 1.259397e-02	ci left: 8.236080e-01	ci right 8.340962e-01	k: 16578	n:20000
CDKL2   20000 perm   3 sec   (5859 perm/sec)   p_kst 8.289000e-01   p_cons 8.645000e-02   p_joint 2.578500e-01

Outputting figure to mutsig2_images.part000000000035/CDKL2.4_1522_20000_0.8289_0.08645_0.25785.png
                gene_name: CDKL2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 42 percent done.
CDRT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.115731e-02	ci left: 2.822084e-01	ci right 3.001135e-01	k: 2911	n:10000
Cons ci ratio: 8.722590e-03	ci left: 9.485639e-01	ci right 9.569698e-01	k: 9529	n:10000
KS ci ratio: 8.403543e-02	ci left: 1.711374e-01	ci right 1.862502e-01	k: 1786	n:10000
CDRT1   10000 perm   1 sec   (6688 perm/sec)   p_kst 1.786000e-01   p_cons 9.529000e-01   p_joint 2.911000e-01

Outputting figure to mutsig2_images.part000000000035/CDRT1.4_2307_10000_0.1786_0.9529_0.2911.png
                gene_name: CDRT1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 43 percent done.
CDS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.019297e-02	ci left: 7.821871e-01	ci right 7.982435e-01	k: 7903	n:10000
Cons ci ratio: 1.573306e-02	ci left: 8.543705e-01	ci right 8.680184e-01	k: 8613	n:10000
KS ci ratio: 3.558222e-02	ci left: 5.383830e-01	ci right 5.579889e-01	k: 5482	n:10000
CDS2   10000 perm   2 sec   (6663 perm/sec)   p_kst 5.482000e-01   p_cons 8.613000e-01   p_joint 7.903000e-01

Outputting figure to mutsig2_images.part000000000035/CDS2.4_1390_10000_0.5482_0.8613_0.7903.png
                gene_name: CDS2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 45 percent done.
CDYL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.158024e-01	ci left: 9.681653e-02	ci right 1.088160e-01	k: 1027	n:10000
Cons ci ratio: 2.176266e-02	ci left: 7.559561e-01	ci right 7.726896e-01	k: 7644	n:10000
KS ci ratio: 1.673668e-01	ci left: 4.763334e-02	ci right 5.642994e-02	k: 519	n:10000
CDYL   10000 perm   1 sec   (7013 perm/sec)   p_kst 5.190000e-02   p_cons 7.644000e-01   p_joint 1.027000e-01

Joint ci ratio: 9.264975e-02	ci left: 7.833140e-02	ci right 8.599059e-02	k: 1642	n:20000
Cons ci ratio: 1.526464e-02	ci left: 7.613802e-01	ci right 7.731420e-01	k: 15346	n:20000
KS ci ratio: 1.171068e-01	ci left: 4.993527e-02	ci right 5.619547e-02	k: 1060	n:20000
CDYL   20000 perm   3 sec   (6185 perm/sec)   p_kst 5.300000e-02   p_cons 7.673000e-01   p_joint 8.210000e-02

Joint ci ratio: 6.056314e-02	ci left: 1.188100e-01	ci right 1.262633e-01	k: 3675	n:30000
Cons ci ratio: 1.251238e-02	ci left: 7.610662e-01	ci right 7.706823e-01	k: 22977	n:30000
KS ci ratio: 9.579296e-02	ci left: 5.032870e-02	ci right 5.542499e-02	k: 1585	n:30000
CDYL   30000 perm   5 sec   (5891 perm/sec)   p_kst 5.283333e-02   p_cons 7.659000e-01   p_joint 1.225000e-01

Outputting figure to mutsig2_images.part000000000035/CDYL.4_1663_30000_0.052833_0.7659_0.1225.png
                gene_name: CDYL
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 47 percent done.
CEACAM18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.830889e-02	ci left: 6.478024e-01	ci right 6.665060e-01	k: 6572	n:10000
Cons ci ratio: 2.329554e-02	ci left: 7.302734e-01	ci right 7.475872e-01	k: 7390	n:10000
KS ci ratio: 5.369191e-02	ci left: 3.382620e-01	ci right 3.570268e-01	k: 3476	n:10000
CEACAM18   10000 perm   1 sec   (6696 perm/sec)   p_kst 3.476000e-01   p_cons 7.390000e-01   p_joint 6.572000e-01

Outputting figure to mutsig2_images.part000000000035/CEACAM18.4_1217_10000_0.3476_0.739_0.6572.png
                gene_name: CEACAM18
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 49 percent done.
CEACAM20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
Cons ci ratio: 2.831816e-01	ci left: 1.613586e-02	ci right 2.154960e-02	k: 187	n:10000
KS ci ratio: 1.956251e-01	ci left: 3.481398e-02	ci right 4.245779e-02	k: 385	n:10000
CEACAM20   10000 perm   1 sec   (6849 perm/sec)   p_kst 3.850000e-02   p_cons 1.870000e-02   p_joint 1.390000e-02

Joint ci ratio: 3.761731e-01	ci left: 4.386465e-03	ci right 6.461320e-03	k: 107	n:20000
Cons ci ratio: 2.050195e-01	ci left: 1.610780e-02	ci right 1.983423e-02	k: 358	n:20000
KS ci ratio: 1.382379e-01	ci left: 3.597246e-02	ci right 4.136272e-02	k: 772	n:20000
CEACAM20   20000 perm   3 sec   (6084 perm/sec)   p_kst 3.860000e-02   p_cons 1.790000e-02   p_joint 5.350000e-03

Joint ci ratio: 1.906213e-01	ci left: 1.257399e-02	ci right 1.525470e-02	k: 416	n:30000
Cons ci ratio: 1.668478e-01	ci left: 1.655765e-02	ci right 1.960336e-02	k: 541	n:30000
KS ci ratio: 1.132532e-01	ci left: 3.622126e-02	ci right 4.060205e-02	k: 1151	n:30000
CEACAM20   30000 perm   5 sec   (5800 perm/sec)   p_kst 3.836667e-02   p_cons 1.803333e-02   p_joint 1.386667e-02

Joint ci ratio: 3.102539e-01	ci left: 3.359053e-03	ci right 4.614644e-03	k: 158	n:40000
Cons ci ratio: 1.524988e-01	ci left: 1.500961e-02	ci right 1.751133e-02	k: 649	n:40000
KS ci ratio: 9.950387e-02	ci left: 3.548853e-02	ci right 3.922902e-02	k: 1493	n:40000
CEACAM20   40000 perm   7 sec   (5619 perm/sec)   p_kst 3.732500e-02   p_cons 1.622500e-02   p_joint 3.950000e-03

Joint ci ratio: 2.241407e-01	ci left: 5.398537e-03	ci right 6.779752e-03	k: 303	n:50000
Cons ci ratio: 1.373911e-01	ci left: 1.491835e-02	ci right 1.713836e-02	k: 800	n:50000
KS ci ratio: 8.667517e-02	ci left: 3.759406e-02	ci right 4.101969e-02	k: 1964	n:50000
CEACAM20   50000 perm   9 sec   (5468 perm/sec)   p_kst 3.928000e-02   p_cons 1.600000e-02   p_joint 6.060000e-03

Joint ci ratio: 1.449042e-01	ci left: 1.117622e-02	ci right 1.293811e-02	k: 722	n:60000
Cons ci ratio: 1.169407e-01	ci left: 1.730729e-02	ci right 1.947299e-02	k: 1102	n:60000
KS ci ratio: 7.999248e-02	ci left: 3.694184e-02	ci right 4.003634e-02	k: 2308	n:60000
CEACAM20   60000 perm   11 sec   (5338 perm/sec)   p_kst 3.846667e-02   p_cons 1.836667e-02   p_joint 1.203333e-02

Joint ci ratio: 1.530384e-01	ci left: 8.574699e-03	ci right 1.000928e-02	k: 649	n:70000
Cons ci ratio: 1.086034e-01	ci left: 1.727823e-02	ci right 1.927627e-02	k: 1278	n:70000
KS ci ratio: 7.414226e-02	ci left: 3.697447e-02	ci right 3.983538e-02	k: 2687	n:70000
CEACAM20   70000 perm   13 sec   (5223 perm/sec)   p_kst 3.838571e-02   p_cons 1.825714e-02   p_joint 9.271429e-03

Joint ci ratio: 1.402174e-01	ci left: 8.996219e-03	ci right 1.036469e-02	k: 773	n:80000
Cons ci ratio: 1.019349e-01	ci left: 1.722402e-02	ci right 1.908616e-02	k: 1451	n:80000
KS ci ratio: 6.842110e-02	ci left: 3.806237e-02	ci right 4.077116e-02	k: 3152	n:80000
CEACAM20   80000 perm   16 sec   (5109 perm/sec)   p_kst 3.940000e-02   p_cons 1.813750e-02   p_joint 9.662500e-03

Joint ci ratio: 1.398387e-01	ci left: 8.049970e-03	ci right 9.270905e-03	k: 778	n:90000
Cons ci ratio: 9.606026e-02	ci left: 1.729328e-02	ci right 1.904908e-02	k: 1634	n:90000
KS ci ratio: 6.430194e-02	ci left: 3.837897e-02	ci right 4.093970e-02	k: 3568	n:90000
CEACAM20   90000 perm   18 sec   (5008 perm/sec)   p_kst 3.964444e-02   p_cons 1.815556e-02   p_joint 8.644444e-03

Joint ci ratio: 1.189699e-01	ci left: 1.010066e-02	ci right 1.138796e-02	k: 1073	n:100000
Cons ci ratio: 9.109677e-02	ci left: 1.735116e-02	ci right 1.901695e-02	k: 1817	n:100000
KS ci ratio: 6.092670e-02	ci left: 3.853761e-02	ci right 4.096918e-02	k: 3974	n:100000
CEACAM20   100000 perm   20 sec   (4908 perm/sec)   p_kst 3.974000e-02   p_cons 1.817000e-02   p_joint 1.073000e-02

Joint ci ratio: 1.190286e-01	ci left: 9.182154e-03	ci right 1.035300e-02	k: 1073	n:110000
Cons ci ratio: 8.665460e-02	ci left: 1.747161e-02	ci right 1.906302e-02	k: 2008	n:110000
KS ci ratio: 5.787460e-02	ci left: 3.887647e-02	ci right 4.120241e-02	k: 4403	n:110000
CEACAM20   110000 perm   23 sec   (4825 perm/sec)   p_kst 4.002727e-02   p_cons 1.825455e-02   p_joint 9.754545e-03

Joint ci ratio: 1.233189e-01	ci left: 7.834815e-03	ci right 8.872489e-03	k: 1001	n:120000
Cons ci ratio: 8.328807e-02	ci left: 1.736954e-02	ci right 1.888720e-02	k: 2174	n:120000
KS ci ratio: 5.543696e-02	ci left: 3.889002e-02	ci right 4.111562e-02	k: 4799	n:120000
CEACAM20   120000 perm   25 sec   (4741 perm/sec)   p_kst 3.999167e-02   p_cons 1.811667e-02   p_joint 8.341667e-03

Joint ci ratio: 1.195123e-01	ci left: 7.716924e-03	ci right 8.705202e-03	k: 1066	n:130000
Cons ci ratio: 8.021587e-02	ci left: 1.731437e-02	ci right 1.876879e-02	k: 2344	n:130000
KS ci ratio: 5.320353e-02	ci left: 3.901714e-02	ci right 4.115728e-02	k: 5210	n:130000
CEACAM20   130000 perm   28 sec   (4643 perm/sec)   p_kst 4.007692e-02   p_cons 1.803077e-02   p_joint 8.200000e-03

Joint ci ratio: 1.199447e-01	ci left: 7.117079e-03	ci right 8.032064e-03	k: 1059	n:140000
Cons ci ratio: 7.728837e-02	ci left: 1.734503e-02	ci right 1.874646e-02	k: 2525	n:140000
KS ci ratio: 5.136769e-02	ci left: 3.890894e-02	ci right 4.096731e-02	k: 5590	n:140000
CEACAM20   140000 perm   31 sec   (4563 perm/sec)   p_kst 3.992857e-02   p_cons 1.803571e-02   p_joint 7.564286e-03

Joint ci ratio: 1.032024e-01	ci left: 9.034755e-03	ci right 1.002434e-02	k: 1428	n:150000
Cons ci ratio: 7.443594e-02	ci left: 1.747716e-02	ci right 1.883489e-02	k: 2722	n:150000
KS ci ratio: 4.955856e-02	ci left: 3.904683e-02	ci right 4.103766e-02	k: 6005	n:150000
CEACAM20   150000 perm   33 sec   (4493 perm/sec)   p_kst 4.003333e-02   p_cons 1.814667e-02   p_joint 9.520000e-03

Joint ci ratio: 9.577023e-02	ci left: 9.865959e-03	ci right 1.086440e-02	k: 1657	n:160000
Cons ci ratio: 7.228212e-02	ci left: 1.739714e-02	ci right 1.870790e-02	k: 2887	n:160000
KS ci ratio: 4.817081e-02	ci left: 3.878557e-02	ci right 4.070616e-02	k: 6358	n:160000
CEACAM20   160000 perm   36 sec   (4422 perm/sec)   p_kst 3.973750e-02   p_cons 1.804375e-02   p_joint 1.035625e-02

Outputting figure to mutsig2_images.part000000000035/CEACAM20.4_1840_160000_0.039738_0.018044_0.010356.png
                gene_name: CEACAM20
               theta_stop: 0.096 
                    nperm: 160000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.010 
     ci_joint_bounds_left: 0.0099 
    ci_joint_bounds_right: 0.011 

Current progress: 51 percent done.
CDHR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.809562e-02	ci left: 6.512237e-01	ci right 6.698827e-01	k: 6606	n:10000
Cons ci ratio: 3.853352e-02	ci left: 4.986503e-01	ci right 5.183447e-01	k: 5085	n:10000
KS ci ratio: 2.901577e-02	ci left: 6.365358e-01	ci right 6.553791e-01	k: 6460	n:10000
CDHR1   10000 perm   2 sec   (6337 perm/sec)   p_kst 6.460000e-01   p_cons 5.085000e-01   p_joint 6.606000e-01

Outputting figure to mutsig2_images.part000000000035/CDHR1.3_2850_10000_0.646_0.5085_0.6606.png
                gene_name: CDHR1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 53 percent done.
CDK11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.790644e-02	ci left: 5.068520e-01	ci right 5.265383e-01	k: 5167	n:10000
Cons ci ratio: 8.846994e-02	ci left: 1.567914e-01	ci right 1.714049e-01	k: 1640	n:10000
KS ci ratio: 1.815547e-02	ci left: 8.157822e-01	ci right 8.308289e-01	k: 8234	n:10000
CDK11B   10000 perm   2 sec   (6451 perm/sec)   p_kst 8.234000e-01   p_cons 1.640000e-01   p_joint 5.167000e-01

Outputting figure to mutsig2_images.part000000000035/CDK11B.3_2459_10000_0.8234_0.164_0.5167.png
                gene_name: CDK11B
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 55 percent done.
CDK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.322110e-01	ci left: 7.543425e-02	ci right 8.621143e-02	k: 807	n:10000
Cons ci ratio: 3.257287e-02	ci left: 5.817902e-01	ci right 6.011565e-01	k: 5915	n:10000
KS ci ratio: 1.874410e-01	ci left: 3.796147e-02	ci right 4.590818e-02	k: 418	n:10000
CDK3   10000 perm   1 sec   (7312 perm/sec)   p_kst 4.180000e-02   p_cons 5.915000e-01   p_joint 8.070000e-02

Joint ci ratio: 8.094596e-02	ci left: 1.006859e-01	ci right 1.092293e-01	k: 2098	n:20000
Cons ci ratio: 2.290059e-02	ci left: 5.874565e-01	ci right 6.011160e-01	k: 11886	n:20000
KS ci ratio: 1.291237e-01	ci left: 4.119905e-02	ci right 4.693445e-02	k: 880	n:20000
CDK3   20000 perm   3 sec   (6488 perm/sec)   p_kst 4.400000e-02   p_cons 5.943000e-01   p_joint 1.049000e-01

Joint ci ratio: 7.891301e-02	ci left: 7.299309e-02	ci right 7.902266e-02	k: 2279	n:30000
Cons ci ratio: 1.866630e-02	ci left: 5.895531e-01	ci right 6.006951e-01	k: 17854	n:30000
KS ci ratio: 1.052841e-01	ci left: 4.183673e-02	ci right 4.651873e-02	k: 1324	n:30000
CDK3   30000 perm   5 sec   (6163 perm/sec)   p_kst 4.413333e-02   p_cons 5.951333e-01   p_joint 7.596667e-02

Joint ci ratio: 7.149533e-02	ci left: 6.739546e-02	ci right 7.241720e-02	k: 2795	n:40000
Cons ci ratio: 1.624319e-02	ci left: 5.879912e-01	ci right 5.976453e-01	k: 23713	n:40000
KS ci ratio: 9.152281e-02	ci left: 4.183960e-02	ci right 4.587696e-02	k: 1753	n:40000
CDK3   40000 perm   7 sec   (5951 perm/sec)   p_kst 4.382500e-02   p_cons 5.928250e-01   p_joint 6.987500e-02

Outputting figure to mutsig2_images.part000000000035/CDK3.3_946_40000_0.043825_0.59283_0.069875.png
                gene_name: CDK3
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.072 

Current progress: 57 percent done.
CDK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.286896e-02	ci left: 4.455036e-01	ci right 4.651224e-01	k: 4553	n:10000
Cons ci ratio: 2.645772e-02	ci left: 6.778079e-01	ci right 6.960831e-01	k: 6870	n:10000
KS ci ratio: 5.072644e-02	ci left: 3.643054e-01	ci right 3.833682e-01	k: 3738	n:10000
CDK4   10000 perm   1 sec   (7515 perm/sec)   p_kst 3.738000e-01   p_cons 6.870000e-01   p_joint 4.553000e-01

Outputting figure to mutsig2_images.part000000000035/CDK4.3_940_10000_0.3738_0.687_0.4553.png
                gene_name: CDK4
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 58 percent done.
CDK5RAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.068598e-01	ci left: 1.122272e-01	ci right 1.249959e-01	k: 1185	n:10000
Cons ci ratio: 1.178575e-01	ci left: 9.370045e-02	ci right 1.055340e-01	k: 995	n:10000
KS ci ratio: 8.400682e-02	ci left: 1.712357e-01	ci right 1.863519e-01	k: 1787	n:10000
CDK5RAP1   10000 perm   1 sec   (6909 perm/sec)   p_kst 1.787000e-01   p_cons 9.950000e-02   p_joint 1.185000e-01

Joint ci ratio: 6.365241e-02	ci left: 1.543023e-01	ci right 1.644969e-01	k: 3187	n:20000
Cons ci ratio: 8.505721e-02	ci left: 9.190214e-02	ci right 1.001157e-01	k: 1919	n:20000
KS ci ratio: 5.823585e-02	ci left: 1.792936e-01	ci right 1.900982e-01	k: 3693	n:20000
CDK5RAP1   20000 perm   3 sec   (6133 perm/sec)   p_kst 1.846500e-01   p_cons 9.595000e-02   p_joint 1.593500e-01

Outputting figure to mutsig2_images.part000000000035/CDK5RAP1.3_1816_20000_0.18465_0.09595_0.15935.png
                gene_name: CDK5RAP1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 60 percent done.
CDKL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.995533e-02	ci left: 3.714676e-01	ci right 3.906018e-01	k: 3810	n:10000
Cons ci ratio: 1.119938e-02	ci left: 9.192503e-01	ci right 9.297008e-01	k: 9246	n:10000
KS ci ratio: 7.302283e-02	ci left: 2.154651e-01	ci right 2.318962e-01	k: 2236	n:10000
CDKL3   10000 perm   1 sec   (6696 perm/sec)   p_kst 2.236000e-01   p_cons 9.246000e-01   p_joint 3.810000e-01

Outputting figure to mutsig2_images.part000000000035/CDKL3.3_1831_10000_0.2236_0.9246_0.381.png
                gene_name: CDKL3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 62 percent done.
CDKN1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.558138e-02	ci left: 8.567172e-01	ci right 8.702703e-01	k: 8636	n:10000
KS ci ratio: 3.132093e-02	ci left: 6.006606e-01	ci right 6.198751e-01	k: 6103	n:10000
CDKN1B   10000 perm   1 sec   (6841 perm/sec)   p_kst 6.103000e-01   p_cons 8.636000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDKN1B.3_605_10000_0.6103_0.8636_1.png
                gene_name: CDKN1B
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
CEACAM21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.507522e-02	ci left: 5.454954e-01	ci right 5.650724e-01	k: 5553	n:10000
Cons ci ratio: 6.602499e-03	ci left: 9.691039e-01	ci right 9.756170e-01	k: 9725	n:10000
KS ci ratio: 4.767244e-02	ci left: 3.936645e-01	ci right 4.129918e-01	k: 4033	n:10000
CEACAM21   10000 perm   1 sec   (7526 perm/sec)   p_kst 4.033000e-01   p_cons 9.725000e-01   p_joint 5.553000e-01

Outputting figure to mutsig2_images.part000000000035/CEACAM21.3_906_10000_0.4033_0.9725_0.5553.png
                gene_name: CEACAM21
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 66 percent done.
CEACAM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.692518e-02	ci left: 8.356181e-01	ci right 8.499816e-01	k: 8429	n:10000
KS ci ratio: 2.162371e-02	ci left: 7.582837e-01	ci right 7.749607e-01	k: 7667	n:10000
CEACAM4   10000 perm   1 sec   (7617 perm/sec)   p_kst 7.667000e-01   p_cons 8.429000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CEACAM4.3_763_10000_0.7667_0.8429_1.png
                gene_name: CEACAM4
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
CEACAM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.961542e-01	ci left: 3.462345e-02	ci right 4.224845e-02	k: 383	n:10000
Cons ci ratio: 2.169949e-01	ci left: 2.816365e-02	ci right 3.511272e-02	k: 315	n:10000
KS ci ratio: 5.325685e-02	ci left: 3.419380e-01	ci right 3.607487e-01	k: 3513	n:10000
CEACAM5   10000 perm   1 sec   (6821 perm/sec)   p_kst 3.513000e-01   p_cons 3.150000e-02   p_joint 3.830000e-02

Joint ci ratio: 1.241901e-01	ci left: 4.449603e-02	ci right 5.043643e-02	k: 948	n:20000
Cons ci ratio: 1.505158e-01	ci left: 3.032647e-02	ci right 3.531057e-02	k: 655	n:20000
KS ci ratio: 3.772852e-02	ci left: 3.438846e-01	ci right 3.571589e-01	k: 7010	n:20000
CEACAM5   20000 perm   3 sec   (6062 perm/sec)   p_kst 3.505000e-01   p_cons 3.275000e-02   p_joint 4.740000e-02

Joint ci ratio: 1.037372e-01	ci left: 4.307172e-02	ci right 4.781681e-02	k: 1362	n:30000
Cons ci ratio: 1.245418e-01	ci left: 2.997251e-02	ci right 3.398546e-02	k: 958	n:30000
KS ci ratio: 2.998077e-02	ci left: 3.575222e-01	ci right 3.684377e-01	k: 10889	n:30000
CEACAM5   30000 perm   5 sec   (5759 perm/sec)   p_kst 3.629667e-01   p_cons 3.193333e-02   p_joint 4.540000e-02

Joint ci ratio: 8.413514e-02	ci left: 4.930521e-02	ci right 5.366020e-02	k: 2058	n:40000
Cons ci ratio: 1.085456e-01	ci left: 2.985858e-02	ci right 3.330986e-02	k: 1262	n:40000
KS ci ratio: 2.600626e-02	ci left: 3.575124e-01	ci right 3.669576e-01	k: 14489	n:40000
CEACAM5   40000 perm   7 sec   (5571 perm/sec)   p_kst 3.622250e-01   p_cons 3.155000e-02   p_joint 5.145000e-02

Joint ci ratio: 7.320283e-02	ci left: 5.225103e-02	ci right 5.624092e-02	k: 2711	n:50000
Cons ci ratio: 9.695171e-02	ci left: 3.012298e-02	ci right 3.321171e-02	k: 1582	n:50000
KS ci ratio: 2.320592e-02	ci left: 3.591023e-01	ci right 3.675535e-01	k: 18166	n:50000
CEACAM5   50000 perm   9 sec   (5428 perm/sec)   p_kst 3.633200e-01   p_cons 3.164000e-02   p_joint 5.422000e-02

Outputting figure to mutsig2_images.part000000000035/CEACAM5.3_2145_50000_0.36332_0.03164_0.05422.png
                gene_name: CEACAM5
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 70 percent done.
CDH5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.123944e-02	ci left: 9.187348e-01	ci right 9.292167e-01	k: 9241	n:10000
Cons ci ratio: 1.888152e-02	ci left: 8.038971e-01	ci right 8.193209e-01	k: 8117	n:10000
KS ci ratio: 4.183805e-02	ci left: 4.575817e-01	ci right 4.772373e-01	k: 4674	n:10000
CDH5   10000 perm   1 sec   (7024 perm/sec)   p_kst 4.674000e-01   p_cons 8.117000e-01   p_joint 9.241000e-01

Outputting figure to mutsig2_images.part000000000035/CDH5.2_2399_10000_0.4674_0.8117_0.9241.png
                gene_name: CDH5
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 72 percent done.
CDHR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.498783e-02	ci left: 8.658043e-01	ci right 8.789779e-01	k: 8725	n:10000
KS ci ratio: 1.584476e-02	ci left: 8.526363e-01	ci right 8.663535e-01	k: 8596	n:10000
CDHR2   10000 perm   2 sec   (5934 perm/sec)   p_kst 8.596000e-01   p_cons 8.725000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDHR2.2_4057_10000_0.8596_0.8725_1.png
                gene_name: CDHR2
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
CDHR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.935709e-02	ci left: 3.771392e-01	ci right 3.963268e-01	k: 3867	n:10000
KS ci ratio: 1.451283e-02	ci left: 8.729587e-01	ci right 8.858194e-01	k: 8795	n:10000
CDHR3   10000 perm   1 sec   (6735 perm/sec)   p_kst 8.795000e-01   p_cons 3.867000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDHR3.2_2734_10000_0.8795_0.3867_1.png
                gene_name: CDHR3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
CDK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.028518e-02	ci left: 3.683836e-01	ci right 3.874876e-01	k: 3779	n:10000
Cons ci ratio: 5.972766e-03	ci left: 9.742942e-01	ci right 9.802233e-01	k: 9774	n:10000
KS ci ratio: 1.627940e-01	ci left: 5.032338e-02	ci right 5.933816e-02	k: 547	n:10000
CDK2   10000 perm   1 sec   (7716 perm/sec)   p_kst 5.470000e-02   p_cons 9.774000e-01   p_joint 3.779000e-01

Joint ci ratio: 8.567560e-02	ci left: 9.067620e-02	ci right 9.884206e-02	k: 1894	n:20000
Cons ci ratio: 4.257117e-03	ci left: 9.748268e-01	ci right 9.790329e-01	k: 19540	n:20000
KS ci ratio: 1.171068e-01	ci left: 4.993527e-02	ci right 5.619547e-02	k: 1060	n:20000
CDK2   20000 perm   3 sec   (6785 perm/sec)   p_kst 5.300000e-02   p_cons 9.770000e-01   p_joint 9.470000e-02

Joint ci ratio: 3.062451e-02	ci left: 3.477892e-01	ci right 3.586393e-01	k: 10596	n:30000
Cons ci ratio: 3.464473e-03	ci left: 9.753783e-01	ci right 9.787952e-01	k: 29314	n:30000
KS ci ratio: 9.519244e-02	ci left: 5.094770e-02	ci right 5.607254e-02	k: 1604	n:30000
CDK2   30000 perm   5 sec   (6428 perm/sec)   p_kst 5.346667e-02   p_cons 9.771333e-01   p_joint 3.532000e-01

Outputting figure to mutsig2_images.part000000000035/CDK2.2_925_30000_0.053467_0.97713_0.3532.png
                gene_name: CDK2
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 77 percent done.
CDK20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.369728e-02	ci left: 5.652404e-01	ci right 5.847159e-01	k: 5750	n:10000
KS ci ratio: 8.857514e-03	ci left: 9.471062e-01	ci right 9.556284e-01	k: 9515	n:10000
CDK20   10000 perm   1 sec   (7676 perm/sec)   p_kst 9.515000e-01   p_cons 5.750000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDK20.2_1112_10000_0.9515_0.575_1.png
                gene_name: CDK20
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
CDK5RAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.157851e-02	ci left: 4.606770e-01	ci right 4.803401e-01	k: 4705	n:10000
Cons ci ratio: 6.730302e-02	ci left: 2.447000e-01	ci right 2.618439e-01	k: 2532	n:10000
KS ci ratio: 8.138550e-02	ci left: 1.805807e-01	ci right 1.960013e-01	k: 1882	n:10000
CDK5RAP3   10000 perm   1 sec   (7335 perm/sec)   p_kst 1.882000e-01   p_cons 2.532000e-01   p_joint 4.705000e-01

Outputting figure to mutsig2_images.part000000000035/CDK5RAP3.2_1577_10000_0.1882_0.2532_0.4705.png
                gene_name: CDK5RAP3
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 81 percent done.
CDKL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.852255e-02	ci left: 8.097874e-01	ci right 8.250272e-01	k: 8175	n:10000
KS ci ratio: 1.945368e-02	ci left: 7.944581e-01	ci right 8.101654e-01	k: 8024	n:10000
CDKL4   10000 perm   1 sec   (7539 perm/sec)   p_kst 8.024000e-01   p_cons 8.175000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CDKL4.2_980_10000_0.8024_0.8175_1.png
                gene_name: CDKL4
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
CDKN2AIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.938045e-01	ci left: 3.548103e-02	ci right 4.319029e-02	k: 392	n:10000
Cons ci ratio: 7.310703e-02	ci left: 2.150704e-01	ci right 2.314911e-01	k: 2232	n:10000
KS ci ratio: 1.144422e-01	ci left: 9.895988e-02	ci right 1.110713e-01	k: 1049	n:10000
CDKN2AIP   10000 perm   1 sec   (7275 perm/sec)   p_kst 1.049000e-01   p_cons 2.232000e-01   p_joint 3.920000e-02

Joint ci ratio: 6.719905e-02	ci left: 1.404921e-01	ci right 1.503112e-01	k: 2907	n:20000
Cons ci ratio: 5.201754e-02	ci left: 2.153645e-01	ci right 2.269167e-01	k: 4422	n:20000
KS ci ratio: 7.955555e-02	ci left: 1.039271e-01	ci right 1.125872e-01	k: 2164	n:20000
CDKN2AIP   20000 perm   3 sec   (6424 perm/sec)   p_kst 1.082000e-01   p_cons 2.211000e-01   p_joint 1.453500e-01

Outputting figure to mutsig2_images.part000000000035/CDKN2AIP.2_1755_20000_0.1082_0.2211_0.14535.png
                gene_name: CDKN2AIP
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 85 percent done.
CDNF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.233711e-02	ci left: 4.516917e-01	ci right 4.713307e-01	k: 4615	n:10000
Cons ci ratio: 5.091111e-02	ci left: 3.626146e-01	ci right 3.816599e-01	k: 3721	n:10000
KS ci ratio: 4.421586e-02	ci left: 4.302397e-01	ci right 4.497953e-01	k: 4400	n:10000
CDNF   10000 perm   1 sec   (7819 perm/sec)   p_kst 4.400000e-01   p_cons 3.721000e-01   p_joint 4.615000e-01

Outputting figure to mutsig2_images.part000000000035/CDNF.2_580_10000_0.44_0.3721_0.4615.png
                gene_name: CDNF
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 87 percent done.
CDR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.544597e-02	ci left: 5.402861e-01	ci right 5.598847e-01	k: 5501	n:10000
Cons ci ratio: 2.169621e-02	ci left: 7.570693e-01	ci right 7.737758e-01	k: 7655	n:10000
KS ci ratio: 9.699204e-02	ci left: 1.335486e-01	ci right 1.472617e-01	k: 1403	n:10000
CDR1   10000 perm   1 sec   (7987 perm/sec)   p_kst 1.403000e-01   p_cons 7.655000e-01   p_joint 5.501000e-01

Outputting figure to mutsig2_images.part000000000035/CDR1.2_793_10000_0.1403_0.7655_0.5501.png
                gene_name: CDR1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 89 percent done.
CDR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
Cons ci ratio: 8.624746e-02	ci left: 1.637654e-01	ci right 1.786266e-01	k: 1711	n:10000
KS ci ratio: 2.272211e-01	ci left: 2.560990e-02	ci right 3.226830e-02	k: 288	n:10000
CDR2   10000 perm   2 sec   (6618 perm/sec)   p_kst 2.880000e-02   p_cons 1.711000e-01   p_joint 4.200000e-02

Joint ci ratio: 1.105960e-01	ci left: 5.582245e-02	ci right 6.240645e-02	k: 1181	n:20000
Cons ci ratio: 6.161776e-02	ci left: 1.630890e-01	ci right 1.735076e-01	k: 3365	n:20000
KS ci ratio: 1.627139e-01	ci left: 2.590150e-02	ci right 3.053703e-02	k: 563	n:20000
CDR2   20000 perm   3 sec   (6335 perm/sec)   p_kst 2.815000e-02   p_cons 1.682500e-01   p_joint 5.905000e-02

Joint ci ratio: 1.070282e-01	ci left: 4.050483e-02	ci right 4.511757e-02	k: 1283	n:30000
Cons ci ratio: 4.994269e-02	ci left: 1.660948e-01	ci right 1.746358e-01	k: 5110	n:30000
KS ci ratio: 1.315815e-01	ci left: 2.683976e-02	ci right 3.065223e-02	k: 861	n:30000
CDR2   30000 perm   5 sec   (6159 perm/sec)   p_kst 2.870000e-02   p_cons 1.703333e-01   p_joint 4.276667e-02

Joint ci ratio: 8.452537e-02	ci left: 4.886422e-02	ci right 5.320125e-02	k: 2040	n:40000
Cons ci ratio: 4.509778e-02	ci left: 1.552802e-01	ci right 1.624694e-01	k: 6354	n:40000
KS ci ratio: 1.141239e-01	ci left: 2.701267e-02	ci right 3.030623e-02	k: 1145	n:40000
CDR2   40000 perm   7 sec   (6011 perm/sec)   p_kst 2.862500e-02   p_cons 1.588500e-01   p_joint 5.100000e-02

Joint ci ratio: 8.102361e-02	ci left: 4.290519e-02	ci right 4.654790e-02	k: 2235	n:50000
Cons ci ratio: 4.023968e-02	ci left: 1.563005e-01	ci right 1.627391e-01	k: 7975	n:50000
KS ci ratio: 1.016202e-01	ci left: 2.742950e-02	ci right 3.038554e-02	k: 1444	n:50000
CDR2   50000 perm   9 sec   (5881 perm/sec)   p_kst 2.888000e-02   p_cons 1.595000e-01   p_joint 4.470000e-02

Joint ci ratio: 6.896155e-02	ci left: 4.933507e-02	ci right 5.287518e-02	k: 3065	n:60000
Cons ci ratio: 3.663399e-02	ci left: 1.573063e-01	ci right 1.631932e-01	k: 9614	n:60000
KS ci ratio: 9.298739e-02	ci left: 2.742742e-02	ci right 3.011842e-02	k: 1725	n:60000
CDR2   60000 perm   10 sec   (5744 perm/sec)   p_kst 2.875000e-02   p_cons 1.602333e-01   p_joint 5.108333e-02

Outputting figure to mutsig2_images.part000000000035/CDR2.2_1385_60000_0.02875_0.16023_0.051083.png
                gene_name: CDR2
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.053 

Current progress: 91 percent done.
CDS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.914919e-02	ci left: 2.347184e-01	ci right 2.516315e-01	k: 2431	n:10000
Cons ci ratio: 1.533912e-01	ci left: 5.658036e-02	ci right 6.607718e-02	k: 612	n:10000
KS ci ratio: 7.142066e-02	ci left: 2.231634e-01	ci right 2.397933e-01	k: 2314	n:10000
CDS1   10000 perm   1 sec   (7336 perm/sec)   p_kst 2.314000e-01   p_cons 6.120000e-02   p_joint 2.431000e-01

Joint ci ratio: 6.823194e-02	ci left: 1.367955e-01	ci right 1.465089e-01	k: 2832	n:20000
Cons ci ratio: 1.064011e-01	ci left: 6.015897e-02	ci right 6.696859e-02	k: 1270	n:20000
KS ci ratio: 5.073785e-02	ci left: 2.239840e-01	ci right 2.356946e-01	k: 4596	n:20000
CDS1   20000 perm   3 sec   (6413 perm/sec)   p_kst 2.298000e-01   p_cons 6.350000e-02   p_joint 1.416000e-01

Joint ci ratio: 5.188837e-02	ci left: 1.556701e-01	ci right 1.639959e-01	k: 4794	n:30000
Cons ci ratio: 8.905410e-02	ci left: 5.795871e-02	ci right 6.339342e-02	k: 1819	n:30000
KS ci ratio: 4.167270e-02	ci left: 2.229977e-01	ci right 2.325218e-01	k: 6832	n:30000
CDS1   30000 perm   5 sec   (6017 perm/sec)   p_kst 2.277333e-01   p_cons 6.063333e-02   p_joint 1.598000e-01

Outputting figure to mutsig2_images.part000000000035/CDS1.2_1438_30000_0.22773_0.060633_0.1598.png
                gene_name: CDS1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 92 percent done.
CEACAM16
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 94 percent done.
CEACAM19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.589065e-02	ci left: 8.519224e-01	ci right 8.656679e-01	k: 8589	n:10000
KS ci ratio: 3.603702e-02	ci left: 5.320736e-01	ci right 5.517020e-01	k: 5419	n:10000
CEACAM19   10000 perm   1 sec   (7964 perm/sec)   p_kst 5.419000e-01   p_cons 8.589000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CEACAM19.2_935_10000_0.5419_0.8589_1.png
                gene_name: CEACAM19
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
CEACAM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.158142e-02	ci left: 7.589922e-01	ci right 7.756518e-01	k: 7674	n:10000
KS ci ratio: 1.334449e-02	ci left: 8.900563e-01	ci right 9.021119e-01	k: 8962	n:10000
CEACAM7   10000 perm   1 sec   (7752 perm/sec)   p_kst 8.962000e-01   p_cons 7.674000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000035/CEACAM7.2_814_10000_0.8962_0.7674_1.png
                gene_name: CEACAM7
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
CEACAM8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.003429e-01	ci left: 1.257171e-01	ci right 1.390978e-01	k: 1323	n:10000
Cons ci ratio: 1.215513e-01	ci left: 8.844634e-02	ci right 9.999129e-02	k: 941	n:10000
KS ci ratio: 6.208866e-02	ci left: 2.760670e-01	ci right 2.938584e-01	k: 2849	n:10000
CEACAM8   10000 perm   1 sec   (7801 perm/sec)   p_kst 2.849000e-01   p_cons 9.410000e-02   p_joint 1.323000e-01

Joint ci ratio: 8.162098e-02	ci left: 9.916397e-02	ci right 1.076517e-01	k: 2067	n:20000
Cons ci ratio: 8.731397e-02	ci left: 8.753876e-02	ci right 9.558044e-02	k: 1830	n:20000
KS ci ratio: 4.396825e-02	ci left: 2.781048e-01	ci right 2.906579e-01	k: 5687	n:20000
CEACAM8   20000 perm   3 sec   (6898 perm/sec)   p_kst 2.843500e-01   p_cons 9.150000e-02   p_joint 1.033500e-01

Outputting figure to mutsig2_images.part000000000035/CEACAM8.2_1070_20000_0.28435_0.0915_0.10335.png
                gene_name: CEACAM8
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.11 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000035
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 35 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1706>
Subject: Job 9893880: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1706>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000036> was used as the working directory.
Started at Sat Oct  6 00:02:14 2012
Results reported at Sat Oct  6 00:11:25 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000036.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000036.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 36  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000036.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    567.06 sec.
    Max Memory :      3530 MB
    Max Swap   :      5938 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
36
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 36
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 36: processing genes 3156 - 3245
Calculating significance of each gene.
Using projection method.
3156	CEBPD	1
3157	CEBPE	7.507473e-01
3158	CEBPG	1
3159	CEBPZ	4.009273e-01
3160	CECR1	5.570521e-01
3161	CECR2	9.338884e-01
3162	CECR5	3.194512e-01
3163	CECR6	1
In gene CEL the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 1810    n = 1	mu =   8.55e-07
3164	CEL	8.831306e-01
3165	CELA1	5.931630e-03
3166	CELA2A	1
3167	CELA2B	7.235714e-01
3168	CELA3A	1.465901e-01
3169	CELA3B	1
3170	CELF1	8.347541e-01
3171	CELF2	7.417301e-01
3172	CELF3	5.422234e-01
3173	CELF4	2.186005e-01
3174	CELF5	1
3175	CELF6	8.328990e-01
3176	CELSR1	9.468824e-01
3177	CELSR2	8.998404e-01
3178	CELSR3	9.999614e-01
3179	CEMP1	1
3180	CEND1	1
3181	CENPA	9.614834e-02
3182	CENPB	6.672186e-01
3183	CENPBD1	1
3184	CENPC1	4.158913e-01
3185	CENPE	3.466735e-01
3186	CENPF	3.398556e-01
3187	CENPH	1
3188	CENPI	9.070067e-01
In gene CENPJ the following bins exceed PROBCAP:
    COAD-AA-3851	categ 6	N = 4081    n = 1	mu =   3.95e-07
3189	CENPJ	3.514705e-01
3190	CENPK	2.662859e-01
3191	CENPL	3.585492e-01
3192	CENPM	6.431426e-01
3193	CENPN	3.256326e-02
3194	CENPO	4.355042e-01
3195	CENPP	5.800514e-01
3196	CENPQ	1
3197	CENPT	1
3198	CENPV	1.780698e-01
3199	CENPW	1
3200	CEP110	1.900174e-01
3201	CEP120	7.002186e-01
3202	CEP135	1.441418e-01
3203	CEP152	8.863235e-01
3204	CEP164	2.903260e-01
3205	CEP170	3.169797e-01
3206	CEP192	5.366750e-01
3207	CEP250	9.962043e-01
3208	CEP290	2.967303e-01
3209	CEP350	7.561468e-01
3210	CEP55	1.387154e-01
3211	CEP57	6.879608e-01
3212	CEP63	5.023410e-02
3213	CEP68	7.578394e-01
3214	CEP70	5.161292e-03
3215	CEP72	9.884893e-01
3216	CEP76	6.487098e-01
3217	CEP78	3.411608e-01
3218	CEP97	6.958253e-01
3219	CEPT1	6.539532e-01
3220	CER1	8.959737e-02
3221	CERCAM	8.156805e-01
3222	CERK	8.599974e-01
3223	CERKL	3.483718e-01
3224	CES1	7.346124e-02
3225	CES2	9.688367e-01
3226	CES3	5.269415e-01
3227	CES7	7.799136e-01
3228	CES8	1
3229	CETN1	5.790033e-02
3230	CETN2	1
3231	CETN3	1
3232	CETP	4.904915e-02
3233	CFB	6.775145e-01
3234	CFD	1
3235	CFDP1	3.817616e-01
3236	CFH	2.420679e-02
3237	CFHR1	1
3238	CFHR2	3.479126e-01
3239	CFHR3	1
3240	CFHR4	1
3241	CFHR5	1.804158e-03
3242	CFI	8.048441e-01
3243	CFL1	2.569214e-01
3244	CFL2	1
3245	CFLAR	4.062922e-01
Done

Running MutSig 2:
Scatter job 36: processing genes 3156 - 3245
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CENPF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.800821e-02	ci left: 1.936760e-01	ci right 2.094982e-01	k: 2015	n:10000
Cons ci ratio: 9.345829e-02	ci left: 1.425640e-01	ci right 1.566408e-01	k: 1495	n:10000
KS ci ratio: 5.799423e-02	ci left: 3.044128e-01	ci right 3.226959e-01	k: 3135	n:10000
CENPF   10000 perm   3 sec   (3101 perm/sec)   p_kst 3.135000e-01   p_cons 1.495000e-01   p_joint 2.015000e-01

Outputting figure to mutsig2_images.part000000000036/CENPF.26_9421_10000_0.3135_0.1495_0.2015.png
                gene_name: CENPF
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 2 percent done.
CEP290
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.775496e-02	ci left: 5.088528e-01	ci right 5.285363e-01	k: 5187	n:10000
Cons ci ratio: 5.640311e-02	ci left: 3.164175e-01	ci right 3.348842e-01	k: 3256	n:10000
KS ci ratio: 3.251899e-02	ci left: 5.825929e-01	ci right 6.019533e-01	k: 5923	n:10000
CEP290   10000 perm   3 sec   (3507 perm/sec)   p_kst 5.923000e-01   p_cons 3.256000e-01   p_joint 5.187000e-01

Outputting figure to mutsig2_images.part000000000036/CEP290.18_7652_10000_0.5923_0.3256_0.5187.png
                gene_name: CEP290
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 4 percent done.
CENPE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.606290e-02	ci left: 2.517205e-01	ci right 2.690193e-01	k: 2603	n:10000
Cons ci ratio: 2.884472e-02	ci left: 6.392513e-01	ci right 6.580620e-01	k: 6487	n:10000
KS ci ratio: 9.180449e-02	ci left: 1.470751e-01	ci right 1.613269e-01	k: 1541	n:10000
CENPE   10000 perm   3 sec   (3605 perm/sec)   p_kst 1.541000e-01   p_cons 6.487000e-01   p_joint 2.603000e-01

Outputting figure to mutsig2_images.part000000000036/CENPE.17_8302_10000_0.1541_0.6487_0.2603.png
                gene_name: CENPE
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 6 percent done.
CFH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.417999e-02	ci left: 4.306386e-01	ci right 4.501961e-01	k: 4404	n:10000
Cons ci ratio: 9.009714e-03	ci left: 9.454415e-01	ci right 9.540941e-01	k: 9499	n:10000
KS ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
CFH   10000 perm   2 sec   (4495 perm/sec)   p_kst 2.266000e-01   p_cons 9.499000e-01   p_joint 4.404000e-01

Outputting figure to mutsig2_images.part000000000036/CFH.16_3802_10000_0.2266_0.9499_0.4404.png
                gene_name: CFH
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 7 percent done.
CEP110
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.102367e-02	ci left: 4.673682e-01	ci right 4.870451e-01	k: 4772	n:10000
KS ci ratio: 8.487256e-03	ci left: 9.510652e-01	ci right 9.592670e-01	k: 9553	n:10000
CEP110   10000 perm   3 sec   (3750 perm/sec)   p_kst 9.553000e-01   p_cons 4.772000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CEP110.12_7146_10000_0.9553_0.4772_1.png
                gene_name: CEP110
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
CEP152
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.491369e-02	ci left: 8.669281e-01	ci right 8.800535e-01	k: 8736	n:10000
Cons ci ratio: 1.831749e-02	ci left: 8.131401e-01	ci right 8.282726e-01	k: 8208	n:10000
KS ci ratio: 2.089156e-02	ci left: 7.705345e-01	ci right 7.869028e-01	k: 7788	n:10000
CEP152   10000 perm   2 sec   (4190 perm/sec)   p_kst 7.788000e-01   p_cons 8.208000e-01   p_joint 8.736000e-01

Outputting figure to mutsig2_images.part000000000036/CEP152.12_5065_10000_0.7788_0.8208_0.8736.png
                gene_name: CEP152
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 11 percent done.
CEP170
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.719233e-02	ci left: 6.658208e-01	ci right 6.842772e-01	k: 6751	n:10000
Cons ci ratio: 2.423853e-02	ci left: 7.145185e-01	ci right 7.321512e-01	k: 7234	n:10000
KS ci ratio: 5.302402e-02	ci left: 3.439253e-01	ci right 3.627602e-01	k: 3533	n:10000
CEP170   10000 perm   2 sec   (4290 perm/sec)   p_kst 3.533000e-01   p_cons 7.234000e-01   p_joint 6.751000e-01

Outputting figure to mutsig2_images.part000000000036/CEP170.12_4861_10000_0.3533_0.7234_0.6751.png
                gene_name: CEP170
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 13 percent done.
CENPJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.195184e-02	ci left: 2.769584e-01	ci right 2.947665e-01	k: 2858	n:10000
Cons ci ratio: 1.075295e-01	ci left: 1.109577e-01	ci right 1.236661e-01	k: 1172	n:10000
KS ci ratio: 2.382108e-02	ci left: 7.214854e-01	ci right 7.389803e-01	k: 7303	n:10000
CENPJ   10000 perm   2 sec   (4153 perm/sec)   p_kst 7.303000e-01   p_cons 1.172000e-01   p_joint 2.858000e-01

Joint ci ratio: 3.447394e-02	ci left: 3.858232e-01	ci right 3.994080e-01	k: 7852	n:20000
Cons ci ratio: 7.702532e-02	ci left: 1.102166e-01	ci right 1.190958e-01	k: 2292	n:20000
KS ci ratio: 1.694696e-02	ci left: 7.216743e-01	ci right 7.340594e-01	k: 14558	n:20000
CENPJ   20000 perm   5 sec   (3804 perm/sec)   p_kst 7.279000e-01   p_cons 1.146000e-01   p_joint 3.926000e-01

Outputting figure to mutsig2_images.part000000000036/CENPJ.11_4081_20000_0.7279_0.1146_0.3926.png
                gene_name: CENPJ
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 15 percent done.
CEP164
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.223354e-02	ci left: 7.480651e-01	ci right 7.649852e-01	k: 7566	n:10000
Cons ci ratio: 3.864930e-02	ci left: 4.971503e-01	ci right 5.168456e-01	k: 5070	n:10000
KS ci ratio: 1.611275e-02	ci left: 8.484554e-01	ci right 8.623369e-01	k: 8555	n:10000
CEP164   10000 perm   2 sec   (4245 perm/sec)   p_kst 8.555000e-01   p_cons 5.070000e-01   p_joint 7.566000e-01

Outputting figure to mutsig2_images.part000000000036/CEP164.10_4507_10000_0.8555_0.507_0.7566.png
                gene_name: CEP164
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 17 percent done.
CELSR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.383424e-02	ci left: 3.370699e-01	ci right 3.558196e-01	k: 3464	n:10000
Cons ci ratio: 6.630385e-02	ci left: 2.503360e-01	ci right 2.676047e-01	k: 2589	n:10000
KS ci ratio: 6.608005e-02	ci left: 2.516216e-01	ci right 2.689183e-01	k: 2602	n:10000
CELSR2   10000 perm   3 sec   (3583 perm/sec)   p_kst 2.602000e-01   p_cons 2.589000e-01   p_joint 3.464000e-01

Outputting figure to mutsig2_images.part000000000036/CELSR2.9_8908_10000_0.2602_0.2589_0.3464.png
                gene_name: CELSR2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 19 percent done.
CEP135
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.281878e-02	ci left: 7.382572e-01	ci right 7.553988e-01	k: 7469	n:10000
Cons ci ratio: 3.016084e-02	ci left: 6.185410e-01	ci right 6.375843e-01	k: 6281	n:10000
KS ci ratio: 2.660544e-02	ci left: 6.753898e-01	ci right 6.937026e-01	k: 6846	n:10000
CEP135   10000 perm   2 sec   (4107 perm/sec)   p_kst 6.846000e-01   p_cons 6.281000e-01   p_joint 7.469000e-01

Outputting figure to mutsig2_images.part000000000036/CEP135.9_3519_10000_0.6846_0.6281_0.7469.png
                gene_name: CEP135
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 20 percent done.
CEP192
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.237119e-02	ci left: 4.512924e-01	ci right 4.709303e-01	k: 4611	n:10000
Cons ci ratio: 1.164260e-02	ci left: 9.134796e-01	ci right 9.242749e-01	k: 9190	n:10000
KS ci ratio: 6.371172e-02	ci left: 2.657701e-01	ci right 2.833614e-01	k: 2745	n:10000
CEP192   10000 perm   3 sec   (3621 perm/sec)   p_kst 2.745000e-01   p_cons 9.190000e-01   p_joint 4.611000e-01

Outputting figure to mutsig2_images.part000000000036/CEP192.9_7790_10000_0.2745_0.919_0.4611.png
                gene_name: CEP192
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 22 percent done.
CEP350
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.780791e-02	ci left: 5.081525e-01	ci right 5.278370e-01	k: 5180	n:10000
KS ci ratio: 1.638534e-02	ci left: 8.441744e-01	ci right 8.582204e-01	k: 8513	n:10000
CEP350   10000 perm   3 sec   (3345 perm/sec)   p_kst 8.513000e-01   p_cons 5.180000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CEP350.9_9502_10000_0.8513_0.518_1.png
                gene_name: CEP350
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
CECR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.022950e-02	ci left: 7.815789e-01	ci right 7.976520e-01	k: 7897	n:10000
Cons ci ratio: 1.233967e-02	ci left: 9.041181e-01	ci right 9.154419e-01	k: 9099	n:10000
KS ci ratio: 3.085544e-02	ci left: 6.077911e-01	ci right 6.269405e-01	k: 6174	n:10000
CECR2   10000 perm   2 sec   (4715 perm/sec)   p_kst 6.174000e-01   p_cons 9.099000e-01   p_joint 7.897000e-01

Outputting figure to mutsig2_images.part000000000036/CECR2.8_4403_10000_0.6174_0.9099_0.7897.png
                gene_name: CECR2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 26 percent done.
CELSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.408683e-01	ci left: 2.268733e-02	ci right 2.899301e-02	k: 257	n:10000
Cons ci ratio: 5.181638e-02	ci left: 3.544610e-01	ci right 3.734183e-01	k: 3639	n:10000
KS ci ratio: 3.277720e-01	ci left: 1.178961e-02	ci right 1.649967e-02	k: 140	n:10000
CELSR1   10000 perm   3 sec   (3556 perm/sec)   p_kst 1.400000e-02   p_cons 3.639000e-01   p_joint 2.570000e-02

Joint ci ratio: 1.750839e-01	ci left: 2.230608e-02	ci right 2.663369e-02	k: 488	n:20000
Cons ci ratio: 3.483806e-02	ci left: 3.808396e-01	ci right 3.943931e-01	k: 7752	n:20000
KS ci ratio: 2.410476e-01	ci left: 1.147624e-02	ci right 1.466766e-02	k: 260	n:20000
CELSR1   20000 perm   6 sec   (3261 perm/sec)   p_kst 1.300000e-02   p_cons 3.876000e-01   p_joint 2.440000e-02

Joint ci ratio: 1.569605e-01	ci left: 1.876615e-02	ci right 2.199434e-02	k: 610	n:30000
Cons ci ratio: 2.845208e-02	ci left: 3.819816e-01	ci right 3.930402e-01	k: 11625	n:30000
KS ci ratio: 1.982318e-01	ci left: 1.159035e-02	ci right 1.417193e-02	k: 385	n:30000
CELSR1   30000 perm   10 sec   (3151 perm/sec)   p_kst 1.283333e-02   p_cons 3.875000e-01   p_joint 2.033333e-02

Joint ci ratio: 1.135640e-01	ci left: 2.728005e-02	ci right 3.058881e-02	k: 1156	n:40000
Cons ci ratio: 2.556878e-02	ci left: 3.653654e-01	ci right 3.748535e-01	k: 14804	n:40000
KS ci ratio: 1.733310e-01	ci left: 1.152992e-02	ci right 1.374168e-02	k: 504	n:40000
CELSR1   40000 perm   13 sec   (3076 perm/sec)   p_kst 1.260000e-02   p_cons 3.701000e-01   p_joint 2.890000e-02

Joint ci ratio: 9.707845e-02	ci left: 3.004486e-02	ci right 3.312984e-02	k: 1578	n:50000
Cons ci ratio: 2.287259e-02	ci left: 3.658057e-01	ci right 3.742894e-01	k: 18502	n:50000
KS ci ratio: 1.534701e-01	ci left: 1.189078e-02	ci right 1.388637e-02	k: 643	n:50000
CELSR1   50000 perm   17 sec   (3023 perm/sec)   p_kst 1.286000e-02   p_cons 3.700400e-01   p_joint 3.156000e-02

Joint ci ratio: 1.001456e-01	ci left: 2.365163e-02	ci right 2.616128e-02	k: 1493	n:60000
Cons ci ratio: 2.090108e-02	ci left: 3.657025e-01	ci right 3.734435e-01	k: 22174	n:60000
KS ci ratio: 1.391712e-01	ci left: 1.214110e-02	ci right 1.397311e-02	k: 782	n:60000
CELSR1   60000 perm   20 sec   (2954 perm/sec)   p_kst 1.303333e-02   p_cons 3.695667e-01   p_joint 2.488333e-02

Joint ci ratio: 9.263520e-02	ci left: 2.378620e-02	ci right 2.611055e-02	k: 1745	n:70000
Cons ci ratio: 1.894478e-02	ci left: 3.759031e-01	ci right 3.831069e-01	k: 26565	n:70000
KS ci ratio: 1.283149e-01	ci left: 1.231227e-02	ci right 1.401415e-02	k: 920	n:70000
CELSR1   70000 perm   24 sec   (2913 perm/sec)   p_kst 1.314286e-02   p_cons 3.795000e-01   p_joint 2.492857e-02

Joint ci ratio: 7.360761e-02	ci left: 3.297583e-02	ci right 3.550809e-02	k: 2738	n:80000
Cons ci ratio: 1.776369e-02	ci left: 3.750125e-01	ci right 3.817463e-01	k: 30270	n:80000
KS ci ratio: 1.204676e-01	ci left: 1.227502e-02	ci right 1.386058e-02	k: 1044	n:80000
CELSR1   80000 perm   28 sec   (2877 perm/sec)   p_kst 1.305000e-02   p_cons 3.783750e-01   p_joint 3.422500e-02

Joint ci ratio: 7.221674e-02	ci left: 3.055402e-02	ci right 3.285407e-02	k: 2852	n:90000
Cons ci ratio: 1.673546e-02	ci left: 3.755516e-01	ci right 3.819007e-01	k: 34085	n:90000
KS ci ratio: 1.136086e-01	ci left: 1.231332e-02	ci right 1.380719e-02	k: 1174	n:90000
CELSR1   90000 perm   32 sec   (2843 perm/sec)   p_kst 1.304444e-02   p_cons 3.787222e-01   p_joint 3.168889e-02

Joint ci ratio: 6.351748e-02	ci left: 3.552339e-02	ci right 3.786358e-02	k: 3668	n:100000
Cons ci ratio: 1.587103e-02	ci left: 3.758819e-01	ci right 3.819052e-01	k: 37889	n:100000
KS ci ratio: 1.065271e-01	ci left: 1.264781e-02	ci right 1.408062e-02	k: 1335	n:100000
CELSR1   100000 perm   36 sec   (2811 perm/sec)   p_kst 1.335000e-02   p_cons 3.788900e-01   p_joint 3.668000e-02

Joint ci ratio: 6.417219e-02	ci left: 3.175523e-02	ci right 3.386950e-02	k: 3608	n:110000
Cons ci ratio: 1.510179e-02	ci left: 3.769759e-01	ci right 3.827213e-01	k: 41783	n:110000
KS ci ratio: 1.015907e-01	ci left: 1.267565e-02	ci right 1.404109e-02	k: 1468	n:110000
CELSR1   110000 perm   40 sec   (2782 perm/sec)   p_kst 1.334545e-02   p_cons 3.798455e-01   p_joint 3.280000e-02

Joint ci ratio: 6.914696e-02	ci left: 2.518066e-02	ci right 2.699234e-02	k: 3129	n:120000
Cons ci ratio: 1.468486e-02	ci left: 3.698301e-01	ci right 3.753094e-01	k: 44708	n:120000
KS ci ratio: 9.790374e-02	ci left: 1.253748e-02	ci right 1.383620e-02	k: 1581	n:120000
CELSR1   120000 perm   44 sec   (2735 perm/sec)   p_kst 1.317500e-02   p_cons 3.725667e-01   p_joint 2.607500e-02

Outputting figure to mutsig2_images.part000000000036/CELSR1.8_9185_120000_0.013175_0.37257_0.026075.png
                gene_name: CELSR1
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 28 percent done.
CEP250
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.138797e-02	ci left: 7.622312e-01	ci right 7.788109e-01	k: 7706	n:10000
KS ci ratio: 1.920806e-02	ci left: 7.985170e-01	ci right 8.141041e-01	k: 8064	n:10000
CEP250   10000 perm   3 sec   (3682 perm/sec)   p_kst 8.064000e-01   p_cons 7.706000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CEP250.8_7457_10000_0.8064_0.7706_1.png
                gene_name: CEP250
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
CEP70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.312653e-02	ci left: 7.331027e-01	ci right 7.503563e-01	k: 7418	n:10000
Cons ci ratio: 4.285168e-02	ci left: 4.457032e-01	ci right 4.653227e-01	k: 4555	n:10000
KS ci ratio: 3.218348e-02	ci left: 5.876103e-01	ci right 6.069330e-01	k: 5973	n:10000
CEP70   10000 perm   2 sec   (5280 perm/sec)   p_kst 5.973000e-01   p_cons 4.555000e-01   p_joint 7.418000e-01

Outputting figure to mutsig2_images.part000000000036/CEP70.8_1858_10000_0.5973_0.4555_0.7418.png
                gene_name: CEP70
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 31 percent done.
CEP120
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.766047e-02	ci left: 8.238140e-01	ci right 8.385925e-01	k: 8313	n:10000
KS ci ratio: 1.830504e-02	ci left: 8.133433e-01	ci right 8.284693e-01	k: 8210	n:10000
CEP120   10000 perm   2 sec   (5036 perm/sec)   p_kst 8.210000e-01   p_cons 8.313000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CEP120.7_3041_10000_0.821_0.8313_1.png
                gene_name: CEP120
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
CEP78
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.550600e-02	ci left: 2.042211e-01	ci right 2.203469e-01	k: 2122	n:10000
Cons ci ratio: 4.214176e-02	ci left: 4.539876e-01	ci right 4.736335e-01	k: 4638	n:10000
KS ci ratio: 9.871639e-02	ci left: 1.294361e-01	ci right 1.429766e-01	k: 1361	n:10000
CEP78   10000 perm   2 sec   (5045 perm/sec)   p_kst 1.361000e-01   p_cons 4.638000e-01   p_joint 2.122000e-01

Outputting figure to mutsig2_images.part000000000036/CEP78.7_2233_10000_0.1361_0.4638_0.2122.png
                gene_name: CEP78
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 35 percent done.
CETP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.092244e-01	ci left: 1.078341e-01	ci right 1.203917e-01	k: 1140	n:10000
Cons ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
KS ci ratio: 4.143695e-02	ci left: 4.623746e-01	ci right 4.820416e-01	k: 4722	n:10000
CETP   10000 perm   2 sec   (5614 perm/sec)   p_kst 4.722000e-01   p_cons 3.600000e-02   p_joint 1.140000e-01

Joint ci ratio: 7.552655e-02	ci left: 1.141990e-01	ci right 1.232122e-01	k: 2373	n:20000
Cons ci ratio: 1.365022e-01	ci left: 3.689100e-02	ci right 4.234388e-02	k: 791	n:20000
KS ci ratio: 2.858079e-02	ci left: 4.777014e-01	ci right 4.916031e-01	k: 9693	n:20000
CETP   20000 perm   4 sec   (5012 perm/sec)   p_kst 4.846500e-01   p_cons 3.955000e-02   p_joint 1.186500e-01

Joint ci ratio: 6.148159e-02	ci left: 1.156524e-01	ci right 1.230215e-01	k: 3579	n:30000
Cons ci ratio: 1.093162e-01	ci left: 3.884897e-02	ci right 4.337378e-02	k: 1232	n:30000
KS ci ratio: 2.333127e-02	ci left: 4.790964e-01	ci right 4.904399e-01	k: 14543	n:30000
CETP   30000 perm   6 sec   (4794 perm/sec)   p_kst 4.847667e-01   p_cons 4.106667e-02   p_joint 1.193000e-01

Joint ci ratio: 4.614684e-02	ci left: 1.492869e-01	ci right 1.563636e-01	k: 6112	n:40000
Cons ci ratio: 9.452118e-02	ci left: 3.927313e-02	ci right 4.319383e-02	k: 1648	n:40000
KS ci ratio: 2.021956e-02	ci left: 4.795162e-01	ci right 4.893360e-01	k: 19377	n:40000
CETP   40000 perm   9 sec   (4646 perm/sec)   p_kst 4.844250e-01   p_cons 4.120000e-02   p_joint 1.528000e-01

Outputting figure to mutsig2_images.part000000000036/CETP.7_1546_40000_0.48442_0.0412_0.1528.png
                gene_name: CETP
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 37 percent done.
CEP63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.221246e-01	ci left: 8.766844e-02	ci right 9.916968e-02	k: 933	n:10000
Cons ci ratio: 1.145032e-01	ci left: 9.886244e-02	ci right 1.109688e-01	k: 1048	n:10000
KS ci ratio: 8.067374e-02	ci left: 1.832380e-01	ci right 1.987424e-01	k: 1909	n:10000
CEP63   10000 perm   2 sec   (5361 perm/sec)   p_kst 1.909000e-01   p_cons 1.048000e-01   p_joint 9.330000e-02

Joint ci ratio: 7.906498e-02	ci left: 1.051060e-01	ci right 1.138079e-01	k: 2188	n:20000
Cons ci ratio: 8.047557e-02	ci left: 1.017662e-01	ci right 1.103488e-01	k: 2120	n:20000
KS ci ratio: 5.753960e-02	ci left: 1.829024e-01	ci right 1.937884e-01	k: 3766	n:20000
CEP63   20000 perm   4 sec   (4802 perm/sec)   p_kst 1.883000e-01   p_cons 1.060000e-01   p_joint 1.094000e-01

Outputting figure to mutsig2_images.part000000000036/CEP63.6_2271_20000_0.1883_0.106_0.1094.png
                gene_name: CEP63
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 39 percent done.
CFHR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.719059e-02	ci left: 3.985447e-01	ci right 4.179088e-01	k: 4082	n:10000
Cons ci ratio: 7.058784e-02	ci left: 2.273104e-01	ci right 2.440439e-01	k: 2356	n:10000
KS ci ratio: 4.553173e-02	ci left: 4.158821e-01	ci right 4.353612e-01	k: 4256	n:10000
CFHR5   10000 perm   2 sec   (5159 perm/sec)   p_kst 4.256000e-01   p_cons 2.356000e-01   p_joint 4.082000e-01

Outputting figure to mutsig2_images.part000000000036/CFHR5.6_1750_10000_0.4256_0.2356_0.4082.png
                gene_name: CFHR5
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 41 percent done.
CEBPZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.392387e-02	ci left: 7.197687e-01	ci right 7.372980e-01	k: 7286	n:10000
Cons ci ratio: 2.591170e-02	ci left: 6.867776e-01	ci right 7.049082e-01	k: 6959	n:10000
KS ci ratio: 4.272236e-02	ci left: 4.472002e-01	ci right 4.668248e-01	k: 4570	n:10000
CEBPZ   10000 perm   2 sec   (4993 perm/sec)   p_kst 4.570000e-01   p_cons 6.959000e-01   p_joint 7.286000e-01

Outputting figure to mutsig2_images.part000000000036/CEBPZ.5_3229_10000_0.457_0.6959_0.7286.png
                gene_name: CEBPZ
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 43 percent done.
CELSR3
Processing conservation and coverage...
99% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.202867e-01	ci left: 9.019709e-02	ci right 1.018395e-01	k: 959	n:10000
Cons ci ratio: 2.644542e-02	ci left: 6.780094e-01	ci right 6.962815e-01	k: 6872	n:10000
KS ci ratio: 2.213733e-01	ci left: 2.702777e-02	ci right 3.384941e-02	k: 303	n:10000
CELSR3   10000 perm   3 sec   (3728 perm/sec)   p_kst 3.030000e-02   p_cons 6.872000e-01   p_joint 9.590000e-02

Joint ci ratio: 8.923154e-02	ci left: 8.405991e-02	ci right 9.196034e-02	k: 1759	n:20000
Cons ci ratio: 1.958457e-02	ci left: 6.604195e-01	ci right 6.735319e-01	k: 13340	n:20000
KS ci ratio: 1.566712e-01	ci left: 2.796788e-02	ci right 3.276994e-02	k: 606	n:20000
CELSR3   20000 perm   6 sec   (3415 perm/sec)   p_kst 3.030000e-02   p_cons 6.670000e-01   p_joint 8.795000e-02

Joint ci ratio: 6.869985e-02	ci left: 9.452672e-02	ci right 1.012847e-01	k: 2936	n:30000
Cons ci ratio: 1.609543e-02	ci left: 6.587231e-01	ci right 6.694451e-01	k: 19923	n:30000
KS ci ratio: 1.276696e-01	ci left: 2.851845e-02	ci right 3.243985e-02	k: 913	n:30000
CELSR3   30000 perm   9 sec   (3291 perm/sec)   p_kst 3.043333e-02   p_cons 6.641000e-01   p_joint 9.786667e-02

Joint ci ratio: 6.287190e-02	ci left: 8.578338e-02	ci right 9.137652e-02	k: 3542	n:40000
Cons ci ratio: 1.391728e-02	ci left: 6.601496e-01	ci right 6.694265e-01	k: 26592	n:40000
KS ci ratio: 1.107375e-01	ci left: 2.869052e-02	ci right 3.207811e-02	k: 1214	n:40000
CELSR3   40000 perm   13 sec   (3155 perm/sec)   p_kst 3.035000e-02   p_cons 6.648000e-01   p_joint 8.855000e-02

Joint ci ratio: 6.202267e-02	ci left: 7.168087e-02	ci right 7.628874e-02	k: 3698	n:50000
Cons ci ratio: 1.218864e-02	ci left: 6.699917e-01	ci right 6.782281e-01	k: 33706	n:50000
KS ci ratio: 9.917321e-02	ci left: 2.879534e-02	ci right 3.181952e-02	k: 1514	n:50000
CELSR3   50000 perm   16 sec   (3113 perm/sec)   p_kst 3.028000e-02   p_cons 6.741200e-01   p_joint 7.396000e-02

Outputting figure to mutsig2_images.part000000000036/CELSR3.5_10079_50000_0.03028_0.67412_0.07396.png
                gene_name: CELSR3
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.076 

Current progress: 44 percent done.
CENPN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.013606e-02	ci left: 9.324734e-01	ci right 9.420699e-01	k: 9374	n:10000
Cons ci ratio: 6.096528e-02	ci left: 2.834963e-01	ci right 3.014247e-01	k: 2924	n:10000
KS ci ratio: 5.107490e-02	ci left: 3.611229e-01	ci right 3.801525e-01	k: 3706	n:10000
CENPN   10000 perm   2 sec   (6143 perm/sec)   p_kst 3.706000e-01   p_cons 2.924000e-01   p_joint 9.374000e-01

Outputting figure to mutsig2_images.part000000000036/CENPN.5_1277_10000_0.3706_0.2924_0.9374.png
                gene_name: CENPN
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 46 percent done.
CEP76
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.709732e-02	ci left: 8.328694e-01	ci right 8.473319e-01	k: 8402	n:10000
Cons ci ratio: 3.149235e-02	ci left: 5.980500e-01	ci right 6.172873e-01	k: 6077	n:10000
KS ci ratio: 2.996751e-02	ci left: 6.215560e-01	ci right 6.405676e-01	k: 6311	n:10000
CEP76   10000 perm   2 sec   (5195 perm/sec)   p_kst 6.311000e-01   p_cons 6.077000e-01   p_joint 8.402000e-01

Outputting figure to mutsig2_images.part000000000036/CEP76.5_2028_10000_0.6311_0.6077_0.8402.png
                gene_name: CEP76
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 48 percent done.
CES1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.265484e-02	ci left: 3.471054e-01	ci right 3.659783e-01	k: 3565	n:10000
Cons ci ratio: 1.302694e-02	ci left: 8.945686e-01	ci right 9.063969e-01	k: 9006	n:10000
KS ci ratio: 7.164216e-02	ci left: 2.220775e-01	ci right 2.386798e-01	k: 2303	n:10000
CES1   10000 perm   2 sec   (5686 perm/sec)   p_kst 2.303000e-01   p_cons 9.006000e-01   p_joint 3.565000e-01

Outputting figure to mutsig2_images.part000000000036/CES1.5_1763_10000_0.2303_0.9006_0.3565.png
                gene_name: CES1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 50 percent done.
CELA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.422880e-02	ci left: 3.337920e-01	ci right 3.524995e-01	k: 3431	n:10000
Cons ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CELA1   10000 perm   2 sec   (6106 perm/sec)   p_kst 1   p_cons 1.131000e-01   p_joint 3.431000e-01

Joint ci ratio: 3.723249e-02	ci left: 3.499080e-01	ci right 3.632337e-01	k: 7131	n:20000
Cons ci ratio: 7.380830e-02	ci left: 1.190194e-01	ci right 1.281903e-01	k: 2471	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
CELA1   20000 perm   4 sec   (5466 perm/sec)   p_kst 1   p_cons 1.235500e-01   p_joint 3.565500e-01

Outputting figure to mutsig2_images.part000000000036/CELA1.4_809_20000_1_0.12355_0.35655.png
                gene_name: CELA1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 52 percent done.
CELF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.503512e-02	ci left: 2.062917e-01	ci right 2.224751e-01	k: 2143	n:10000
Cons ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KS ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
CELF4   10000 perm   2 sec   (6110 perm/sec)   p_kst 7.950000e-02   p_cons 1   p_joint 2.143000e-01

Joint ci ratio: 6.435016e-02	ci left: 1.514405e-01	ci right 1.615596e-01	k: 3129	n:20000
Cons ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
KS ci ratio: 9.237437e-02	ci left: 7.877186e-02	ci right 8.645000e-02	k: 1651	n:20000
CELF4   20000 perm   4 sec   (5476 perm/sec)   p_kst 8.255000e-02   p_cons 1   p_joint 1.564500e-01

Outputting figure to mutsig2_images.part000000000036/CELF4.4_1509_20000_0.08255_1_0.15645.png
                gene_name: CELF4
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 1 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 54 percent done.
CEP55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.223032e-02	ci left: 5.869078e-01	ci right 6.062359e-01	k: 5966	n:10000
Cons ci ratio: 1.571331e-02	ci left: 8.546766e-01	ci right 8.683121e-01	k: 8616	n:10000
KS ci ratio: 4.919105e-02	ci left: 3.787315e-01	ci right 3.979336e-01	k: 3883	n:10000
CEP55   10000 perm   2 sec   (5783 perm/sec)   p_kst 3.883000e-01   p_cons 8.616000e-01   p_joint 5.966000e-01

Outputting figure to mutsig2_images.part000000000036/CEP55.4_1427_10000_0.3883_0.8616_0.5966.png
                gene_name: CEP55
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 56 percent done.
CEP68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.749028e-02	ci left: 8.265603e-01	ci right 8.412446e-01	k: 8340	n:10000
KS ci ratio: 2.219733e-02	ci left: 7.486720e-01	ci right 7.655780e-01	k: 7572	n:10000
CEP68   10000 perm   2 sec   (5480 perm/sec)   p_kst 7.572000e-01   p_cons 8.340000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CEP68.4_2294_10000_0.7572_0.834_1.png
                gene_name: CEP68
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
CERKL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.188540e-01	ci left: 9.224042e-02	ci right 1.039949e-01	k: 980	n:10000
Cons ci ratio: 8.203014e-02	ci left: 1.782191e-01	ci right 1.935643e-01	k: 1858	n:10000
KS ci ratio: 1.213381e-01	ci left: 8.873809e-02	ci right 1.002994e-01	k: 944	n:10000
CERKL   10000 perm   2 sec   (5657 perm/sec)   p_kst 9.440000e-02   p_cons 1.858000e-01   p_joint 9.800000e-02

Joint ci ratio: 6.769007e-02	ci left: 1.387176e-01	ci right 1.484862e-01	k: 2871	n:20000
Cons ci ratio: 5.919110e-02	ci left: 1.744997e-01	ci right 1.851936e-01	k: 3596	n:20000
KS ci ratio: 8.535257e-02	ci left: 9.131366e-02	ci right 9.950440e-02	k: 1907	n:20000
CERKL   20000 perm   4 sec   (5086 perm/sec)   p_kst 9.535000e-02   p_cons 1.798000e-01   p_joint 1.435500e-01

Outputting figure to mutsig2_images.part000000000036/CERKL.4_1733_20000_0.09535_0.1798_0.14355.png
                gene_name: CERKL
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.100 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 59 percent done.
CETN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.470045e-02	ci left: 5.508059e-01	ci right 5.703587e-01	k: 5606	n:10000
Cons ci ratio: 3.315575e-02	ci left: 5.731628e-01	ci right 5.925889e-01	k: 5829	n:10000
KS ci ratio: 4.966014e-02	ci left: 3.742535e-01	ci right 3.934142e-01	k: 3838	n:10000
CETN1   10000 perm   2 sec   (6596 perm/sec)   p_kst 3.838000e-01   p_cons 5.829000e-01   p_joint 5.606000e-01

Outputting figure to mutsig2_images.part000000000036/CETN1.4_523_10000_0.3838_0.5829_0.5606.png
                gene_name: CETN1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 61 percent done.
CFB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.849424e-02	ci left: 3.855000e-01	ci right 4.047611e-01	k: 3951	n:10000
KS ci ratio: 2.980043e-02	ci left: 6.241692e-01	ci right 6.431529e-01	k: 6337	n:10000
CFB   10000 perm   2 sec   (6073 perm/sec)   p_kst 6.337000e-01   p_cons 3.951000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CFB.4_2367_10000_0.6337_0.3951_1.png
                gene_name: CFB
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
CECR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.137174e-02	ci left: 3.584380e-01	ci right 3.774390e-01	k: 3679	n:10000
Cons ci ratio: 5.677757e-02	ci left: 3.135397e-01	ci right 3.319637e-01	k: 3227	n:10000
KS ci ratio: 5.488470e-02	ci left: 3.284292e-01	ci right 3.470654e-01	k: 3377	n:10000
CECR5   10000 perm   2 sec   (6146 perm/sec)   p_kst 3.377000e-01   p_cons 3.227000e-01   p_joint 3.679000e-01

Outputting figure to mutsig2_images.part000000000036/CECR5.3_1344_10000_0.3377_0.3227_0.3679.png
                gene_name: CECR5
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 65 percent done.
CELA3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.926472e-02	ci left: 4.892517e-01	ci right 5.089489e-01	k: 4991	n:10000
Cons ci ratio: 7.625897e-02	ci left: 2.009680e-01	ci right 2.170019e-01	k: 2089	n:10000
KS ci ratio: 1.771079e-02	ci left: 8.230004e-01	ci right 8.378066e-01	k: 8305	n:10000
CELA3A   10000 perm   2 sec   (6410 perm/sec)   p_kst 8.305000e-01   p_cons 2.089000e-01   p_joint 4.991000e-01

Outputting figure to mutsig2_images.part000000000036/CELA3A.3_845_10000_0.8305_0.2089_0.4991.png
                gene_name: CELA3A
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 67 percent done.
CELF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.439852e-01	ci left: 6.401182e-02	ci right 7.404101e-02	k: 689	n:10000
Cons ci ratio: 2.895237e-02	ci left: 6.375415e-01	ci right 6.563728e-01	k: 6470	n:10000
KS ci ratio: 2.040185e-01	ci left: 3.195912e-02	ci right 3.931460e-02	k: 355	n:10000
CELF3   10000 perm   2 sec   (6262 perm/sec)   p_kst 3.550000e-02   p_cons 6.470000e-01   p_joint 6.890000e-02

Joint ci ratio: 8.821853e-02	ci left: 8.587260e-02	ci right 9.384710e-02	k: 1796	n:20000
Cons ci ratio: 2.057872e-02	ci left: 6.379711e-01	ci right 6.512868e-01	k: 12893	n:20000
KS ci ratio: 1.439520e-01	ci left: 3.317126e-02	ci right 3.836483e-02	k: 714	n:20000
CELF3   20000 perm   4 sec   (5536 perm/sec)   p_kst 3.570000e-02   p_cons 6.446500e-01   p_joint 8.980000e-02

Joint ci ratio: 6.618062e-02	ci left: 1.012243e-01	ci right 1.081857e-01	k: 3140	n:30000
Cons ci ratio: 1.679598e-02	ci left: 6.393875e-01	ci right 6.502511e-01	k: 19345	n:30000
KS ci ratio: 1.180231e-01	ci left: 3.336977e-02	ci right 3.758748e-02	k: 1063	n:30000
CELF3   30000 perm   6 sec   (5181 perm/sec)   p_kst 3.543333e-02   p_cons 6.448333e-01   p_joint 1.046667e-01

Joint ci ratio: 6.186186e-02	ci left: 8.839594e-02	ci right 9.406356e-02	k: 3648	n:40000
Cons ci ratio: 1.498078e-02	ci left: 6.264750e-01	ci right 6.359560e-01	k: 25249	n:40000
KS ci ratio: 1.018645e-01	ci left: 3.387862e-02	ci right 3.753919e-02	k: 1427	n:40000
CELF3   40000 perm   8 sec   (4759 perm/sec)   p_kst 3.567500e-02   p_cons 6.312250e-01   p_joint 9.120000e-02

Joint ci ratio: 5.666899e-02	ci left: 8.485955e-02	ci right 8.982848e-02	k: 4366	n:50000
Cons ci ratio: 1.343226e-02	ci left: 6.258308e-01	ci right 6.343140e-01	k: 31504	n:50000
KS ci ratio: 9.164438e-02	ci left: 3.367996e-02	ci right 3.693428e-02	k: 1764	n:50000
CELF3   50000 perm   11 sec   (4684 perm/sec)   p_kst 3.528000e-02   p_cons 6.300800e-01   p_joint 8.732000e-02

Outputting figure to mutsig2_images.part000000000036/CELF3.3_1454_50000_0.03528_0.63008_0.08732.png
                gene_name: CELF3
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.090 

Current progress: 69 percent done.
CENPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.627510e-02	ci left: 4.080090e-01	ci right 4.274390e-01	k: 4177	n:10000
Cons ci ratio: 6.503433e-03	ci left: 9.699492e-01	ci right 9.763711e-01	k: 9733	n:10000
KS ci ratio: 7.422056e-02	ci left: 2.099406e-01	ci right 2.262240e-01	k: 2180	n:10000
CENPC1   10000 perm   2 sec   (5496 perm/sec)   p_kst 2.180000e-01   p_cons 9.733000e-01   p_joint 4.177000e-01

Outputting figure to mutsig2_images.part000000000036/CENPC1.3_2908_10000_0.218_0.9733_0.4177.png
                gene_name: CENPC1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 70 percent done.
CEP97
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.060644e-02	ci left: 7.752957e-01	ci right 7.915388e-01	k: 7835	n:10000
Cons ci ratio: 2.422036e-02	ci left: 7.148214e-01	ci right 7.324482e-01	k: 7237	n:10000
KS ci ratio: 3.204321e-02	ci left: 5.897180e-01	ci right 6.090241e-01	k: 5994	n:10000
CEP97   10000 perm   2 sec   (5671 perm/sec)   p_kst 5.994000e-01   p_cons 7.237000e-01   p_joint 7.835000e-01

Outputting figure to mutsig2_images.part000000000036/CEP97.3_2642_10000_0.5994_0.7237_0.7835.png
                gene_name: CEP97
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 72 percent done.
CER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.057999e-01	ci left: 1.142783e-01	ci right 1.271436e-01	k: 1206	n:10000
Cons ci ratio: 9.331165e-02	ci left: 1.429561e-01	ci right 1.570484e-01	k: 1499	n:10000
KS ci ratio: 8.879380e-02	ci left: 1.558095e-01	ci right 1.703873e-01	k: 1630	n:10000
CER1   10000 perm   2 sec   (6620 perm/sec)   p_kst 1.630000e-01   p_cons 1.499000e-01   p_joint 1.206000e-01

Joint ci ratio: 5.608573e-02	ci left: 1.907652e-01	ci right 2.018232e-01	k: 3925	n:20000
Cons ci ratio: 6.431362e-02	ci left: 1.515885e-01	ci right 1.617116e-01	k: 3132	n:20000
KS ci ratio: 6.270728e-02	ci left: 1.583001e-01	ci right 1.685980e-01	k: 3268	n:20000
CER1   20000 perm   3 sec   (5807 perm/sec)   p_kst 1.634000e-01   p_cons 1.566000e-01   p_joint 1.962500e-01

Outputting figure to mutsig2_images.part000000000036/CER1.3_812_20000_0.1634_0.1566_0.19625.png
                gene_name: CER1
               theta_stop: 0.064 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 74 percent done.
CES3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.213668e-02	ci left: 5.883129e-01	ci right 6.076300e-01	k: 5980	n:10000
Cons ci ratio: 2.536816e-02	ci left: 6.957512e-01	ci right 7.137293e-01	k: 7048	n:10000
KS ci ratio: 4.844356e-02	ci left: 3.859978e-01	ci right 4.052631e-01	k: 3956	n:10000
CES3   10000 perm   2 sec   (6044 perm/sec)   p_kst 3.956000e-01   p_cons 7.048000e-01   p_joint 5.980000e-01

Outputting figure to mutsig2_images.part000000000036/CES3.3_1768_10000_0.3956_0.7048_0.598.png
                gene_name: CES3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 76 percent done.
CFLAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.127937e-02	ci left: 4.642721e-01	ci right 4.839430e-01	k: 4741	n:10000
Cons ci ratio: 1.307051e-02	ci left: 8.939531e-01	ci right 9.058128e-01	k: 9000	n:10000
KS ci ratio: 6.884996e-02	ci left: 2.362992e-01	ci right 2.532497e-01	k: 2447	n:10000
CFLAR   10000 perm   2 sec   (6652 perm/sec)   p_kst 2.447000e-01   p_cons 9.000000e-01   p_joint 4.741000e-01

Outputting figure to mutsig2_images.part000000000036/CFLAR.3_1543_10000_0.2447_0.9_0.4741.png
                gene_name: CFLAR
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 78 percent done.
CECR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.211284e-02	ci left: 7.500881e-01	ci right 7.669611e-01	k: 7586	n:10000
KS ci ratio: 1.086698e-02	ci left: 9.234805e-01	ci right 9.336681e-01	k: 9287	n:10000
CECR1   10000 perm   2 sec   (6289 perm/sec)   p_kst 9.287000e-01   p_cons 7.586000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CECR1.2_1606_10000_0.9287_0.7586_1.png
                gene_name: CECR1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
CELF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.305878e-03	ci left: 9.793064e-01	ci right 9.846075e-01	k: 9821	n:10000
Cons ci ratio: 1.383594e-01	ci left: 6.913757e-02	ci right 7.951204e-02	k: 742	n:10000
KS ci ratio: 5.305878e-03	ci left: 9.793064e-01	ci right 9.846075e-01	k: 9821	n:10000
CELF2   10000 perm   2 sec   (6358 perm/sec)   p_kst 9.821000e-01   p_cons 7.420000e-02   p_joint 9.821000e-01

Joint ci ratio: 1.380540e-02	ci left: 7.956508e-01	ci right 8.067615e-01	k: 16025	n:20000
Cons ci ratio: 9.819427e-02	ci left: 7.016491e-02	ci right 7.745958e-02	k: 1475	n:20000
KS ci ratio: 3.714973e-03	ci left: 9.804809e-01	ci right 9.841770e-01	k: 19648	n:20000
CELF2   20000 perm   4 sec   (5550 perm/sec)   p_kst 9.824000e-01   p_cons 7.375000e-02   p_joint 8.012500e-01

Outputting figure to mutsig2_images.part000000000036/CELF2.2_1687_20000_0.9824_0.07375_0.80125.png
                gene_name: CELF2
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 81 percent done.
CENPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.056996e-02	ci left: 2.861716e-01	ci right 3.041479e-01	k: 2951	n:10000
Cons ci ratio: 4.827181e-02	ci left: 3.876902e-01	ci right 4.069696e-01	k: 3973	n:10000
KS ci ratio: 6.822271e-02	ci left: 2.396590e-01	ci right 2.566879e-01	k: 2481	n:10000
CENPA   10000 perm   1 sec   (7290 perm/sec)   p_kst 2.481000e-01   p_cons 3.973000e-01   p_joint 2.951000e-01

Outputting figure to mutsig2_images.part000000000036/CENPA.2_439_10000_0.2481_0.3973_0.2951.png
                gene_name: CENPA
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 83 percent done.
CENPB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.021042e-02	ci left: 3.690799e-01	ci right 3.881908e-01	k: 3786	n:10000
Cons ci ratio: 7.086321e-02	ci left: 2.259279e-01	ci right 2.426271e-01	k: 2342	n:10000
KS ci ratio: 4.658079e-02	ci left: 4.048206e-01	ci right 4.242292e-01	k: 4145	n:10000
CENPB   10000 perm   2 sec   (6213 perm/sec)   p_kst 4.145000e-01   p_cons 2.342000e-01   p_joint 3.786000e-01

Outputting figure to mutsig2_images.part000000000036/CENPB.2_1804_10000_0.4145_0.2342_0.3786.png
                gene_name: CENPB
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 85 percent done.
CENPK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.879412e-02	ci left: 6.400560e-01	ci right 6.588569e-01	k: 6495	n:10000
KS ci ratio: 1.104622e-02	ci left: 9.212101e-01	ci right 9.315399e-01	k: 9265	n:10000
CENPK   10000 perm   1 sec   (6713 perm/sec)   p_kst 9.265000e-01   p_cons 6.495000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CENPK.2_846_10000_0.9265_0.6495_1.png
                gene_name: CENPK
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
CENPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.386992e-02	ci left: 5.627338e-01	ci right 5.822240e-01	k: 5725	n:10000
Cons ci ratio: 4.849424e-02	ci left: 3.855000e-01	ci right 4.047611e-01	k: 3951	n:10000
KS ci ratio: 2.089156e-02	ci left: 7.705345e-01	ci right 7.869028e-01	k: 7788	n:10000
CENPL   10000 perm   1 sec   (6728 perm/sec)   p_kst 7.788000e-01   p_cons 3.951000e-01   p_joint 5.725000e-01

Outputting figure to mutsig2_images.part000000000036/CENPL.2_1193_10000_0.7788_0.3951_0.5725.png
                gene_name: CENPL
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 89 percent done.
CENPO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.665763e-02	ci left: 4.040236e-01	ci right 4.234267e-01	k: 4137	n:10000
Cons ci ratio: 1.003429e-01	ci left: 1.257171e-01	ci right 1.390978e-01	k: 1323	n:10000
KS ci ratio: 2.427486e-02	ci left: 7.139129e-01	ci right 7.315572e-01	k: 7228	n:10000
CENPO   10000 perm   2 sec   (6665 perm/sec)   p_kst 7.228000e-01   p_cons 1.323000e-01   p_joint 4.137000e-01

Joint ci ratio: 3.792404e-02	ci left: 3.415452e-01	ci right 3.547989e-01	k: 6963	n:20000
Cons ci ratio: 7.156303e-02	ci left: 1.257620e-01	ci right 1.351457e-01	k: 2608	n:20000
KS ci ratio: 1.718667e-02	ci left: 7.160360e-01	ci right 7.284993e-01	k: 14446	n:20000
CENPO   20000 perm   3 sec   (5863 perm/sec)   p_kst 7.223000e-01   p_cons 1.304000e-01   p_joint 3.481500e-01

Outputting figure to mutsig2_images.part000000000036/CENPO.2_927_20000_0.7223_0.1304_0.34815.png
                gene_name: CENPO
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 91 percent done.
CENPV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.815626e-02	ci left: 3.032226e-01	ci right 3.214868e-01	k: 3123	n:10000
Cons ci ratio: 5.248318e-02	ci left: 3.485962e-01	ci right 3.674866e-01	k: 3580	n:10000
KS ci ratio: 3.213668e-02	ci left: 5.883129e-01	ci right 6.076300e-01	k: 5980	n:10000
CENPV   10000 perm   2 sec   (6288 perm/sec)   p_kst 5.980000e-01   p_cons 3.580000e-01   p_joint 3.123000e-01

Outputting figure to mutsig2_images.part000000000036/CENPV.2_839_10000_0.598_0.358_0.3123.png
                gene_name: CENPV
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 93 percent done.
CEP57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.559658e-02	ci left: 5.381826e-01	ci right 5.577894e-01	k: 5480	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CEP57   10000 perm   1 sec   (6670 perm/sec)   p_kst 1   p_cons 5.480000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000036/CEP57.2_1547_10000_1_0.548_1.png
                gene_name: CEP57
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
CFDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.103697e-02	ci left: 7.681038e-01	ci right 7.845349e-01	k: 7764	n:10000
Cons ci ratio: 4.589673e-02	ci left: 4.119951e-01	ci right 4.314506e-01	k: 4217	n:10000
KS ci ratio: 5.395232e-03	ci left: 9.786643e-01	ci right 9.840501e-01	k: 9815	n:10000
CFDP1   10000 perm   2 sec   (6640 perm/sec)   p_kst 9.815000e-01   p_cons 4.217000e-01   p_joint 7.764000e-01

Outputting figure to mutsig2_images.part000000000036/CFDP1.2_928_10000_0.9815_0.4217_0.7764.png
                gene_name: CFDP1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 96 percent done.
CFHR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.468054e-02	ci left: 2.078695e-01	ci right 2.240963e-01	k: 2159	n:10000
Cons ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
KS ci ratio: 4.527199e-02	ci left: 4.186732e-01	ci right 4.381685e-01	k: 4284	n:10000
CFHR2   10000 perm   2 sec   (6566 perm/sec)   p_kst 4.284000e-01   p_cons 7.860000e-02   p_joint 2.159000e-01

Joint ci ratio: 8.454669e-02	ci left: 9.293210e-02	ci right 1.011855e-01	k: 1940	n:20000
Cons ci ratio: 9.529722e-02	ci left: 7.427104e-02	ci right 8.175220e-02	k: 1559	n:20000
KS ci ratio: 3.134749e-02	ci left: 4.318570e-01	ci right 4.456608e-01	k: 8775	n:20000
CFHR2   20000 perm   3 sec   (5762 perm/sec)   p_kst 4.387500e-01   p_cons 7.795000e-02   p_joint 9.700000e-02

Outputting figure to mutsig2_images.part000000000036/CFHR2.2_833_20000_0.43875_0.07795_0.097.png
                gene_name: CFHR2
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.10 

Current progress: 98 percent done.
CFI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.110452e-01	ci left: 1.046144e-01	ci right 1.170133e-01	k: 1107	n:10000
Cons ci ratio: 5.872968e-02	ci left: 2.990576e-01	ci right 3.172542e-01	k: 3081	n:10000
KS ci ratio: 3.527114e-01	ci left: 1.005013e-02	ci right 1.444087e-02	k: 121	n:10000
CFI   10000 perm   2 sec   (6039 perm/sec)   p_kst 1.210000e-02   p_cons 3.081000e-01   p_joint 1.107000e-01

Joint ci ratio: 7.413374e-02	ci left: 1.180846e-01	ci right 1.272254e-01	k: 2452	n:20000
Cons ci ratio: 4.064432e-02	ci left: 3.109510e-01	ci right 3.239021e-01	k: 6348	n:20000
KS ci ratio: 2.553012e-01	ci left: 1.016235e-02	ci right 1.318213e-02	k: 232	n:20000
CFI   20000 perm   4 sec   (5343 perm/sec)   p_kst 1.160000e-02   p_cons 3.174000e-01   p_joint 1.226000e-01

Joint ci ratio: 8.760277e-02	ci left: 5.981931e-02	ci right 6.533244e-02	k: 1876	n:30000
Cons ci ratio: 3.428783e-02	ci left: 2.982335e-01	ci right 3.086712e-01	k: 9103	n:30000
KS ci ratio: 2.101336e-01	ci left: 1.026113e-02	ci right 1.270152e-02	k: 343	n:30000
CFI   30000 perm   6 sec   (5092 perm/sec)   p_kst 1.143333e-02   p_cons 3.034333e-01   p_joint 6.253333e-02

Joint ci ratio: 6.932054e-02	ci left: 7.145318e-02	ci right 7.660886e-02	k: 2960	n:40000
Cons ci ratio: 2.868528e-02	ci left: 3.136861e-01	ci right 3.228403e-01	k: 12730	n:40000
KS ci ratio: 1.785985e-01	ci left: 1.083650e-02	ci right 1.298523e-02	k: 475	n:40000
CFI   40000 perm   8 sec   (4919 perm/sec)   p_kst 1.187500e-02   p_cons 3.182500e-01   p_joint 7.400000e-02

Joint ci ratio: 4.970276e-02	ci left: 1.078834e-01	ci right 1.134019e-01	k: 5531	n:50000
Cons ci ratio: 2.580156e-02	ci left: 3.117463e-01	ci right 3.199150e-01	k: 15791	n:50000
KS ci ratio: 1.602899e-01	ci left: 1.087191e-02	ci right 1.278539e-02	k: 590	n:50000
CFI   50000 perm   10 sec   (4786 perm/sec)   p_kst 1.180000e-02   p_cons 3.158200e-01   p_joint 1.106200e-01

Joint ci ratio: 4.663966e-02	ci left: 1.028713e-01	ci right 1.078003e-01	k: 6319	n:60000
Cons ci ratio: 2.358387e-02	ci left: 3.115497e-01	ci right 3.190016e-01	k: 18916	n:60000
KS ci ratio: 1.452094e-01	ci left: 1.112802e-02	ci right 1.288633e-02	k: 719	n:60000
CFI   60000 perm   13 sec   (4681 perm/sec)   p_kst 1.198333e-02   p_cons 3.152667e-01   p_joint 1.053167e-01

Joint ci ratio: 6.261059e-02	ci left: 5.136585e-02	ci right 5.469989e-02	k: 3711	n:70000
Cons ci ratio: 2.272482e-02	ci left: 2.948836e-01	ci right 3.016760e-01	k: 20879	n:70000
KS ci ratio: 1.346816e-01	ci left: 1.115127e-02	ci right 1.277527e-02	k: 836	n:70000
CFI   70000 perm   15 sec   (4577 perm/sec)   p_kst 1.194286e-02   p_cons 2.982714e-01   p_joint 5.301429e-02

Joint ci ratio: 6.185699e-02	ci left: 4.631949e-02	ci right 4.928841e-02	k: 3823	n:80000
Cons ci ratio: 2.125069e-02	ci left: 2.952305e-01	ci right 3.015842e-01	k: 23872	n:80000
KS ci ratio: 1.271706e-01	ci left: 1.099057e-02	ci right 1.249515e-02	k: 938	n:80000
CFI   80000 perm   18 sec   (4482 perm/sec)   p_kst 1.172500e-02   p_cons 2.984000e-01   p_joint 4.778750e-02

Joint ci ratio: 4.003549e-02	ci left: 9.433612e-02	ci right 9.820106e-02	k: 8663	n:90000
Cons ci ratio: 2.004871e-02	ci left: 2.951347e-01	ci right 3.011228e-01	k: 26831	n:90000
KS ci ratio: 1.201497e-01	ci left: 1.098613e-02	ci right 1.240117e-02	k: 1051	n:90000
CFI   90000 perm   20 sec   (4392 perm/sec)   p_kst 1.167778e-02   p_cons 2.981222e-01   p_joint 9.625556e-02

Joint ci ratio: 4.119498e-02	ci left: 8.131702e-02	ci right 8.474721e-02	k: 8302	n:100000
Cons ci ratio: 1.902867e-02	ci left: 2.950963e-01	ci right 3.007755e-01	k: 29793	n:100000
KS ci ratio: 1.142757e-01	ci left: 1.096497e-02	ci right 1.230358e-02	k: 1162	n:100000
CFI   100000 perm   23 sec   (4312 perm/sec)   p_kst 1.162000e-02   p_cons 2.979300e-01   p_joint 8.302000e-02

Joint ci ratio: 3.295128e-02	ci left: 1.121095e-01	ci right 1.158745e-01	k: 12538	n:110000
Cons ci ratio: 1.811926e-02	ci left: 2.957785e-01	ci right 3.011958e-01	k: 32833	n:110000
KS ci ratio: 1.090569e-01	ci left: 1.097558e-02	ci right 1.225036e-02	k: 1276	n:110000
CFI   110000 perm   26 sec   (4236 perm/sec)   p_kst 1.160000e-02   p_cons 2.984818e-01   p_joint 1.139818e-01

Joint ci ratio: 3.495373e-02	ci left: 9.320609e-02	ci right 9.653019e-02	k: 11383	n:120000
Cons ci ratio: 1.668340e-02	ci left: 3.124636e-01	ci right 3.177287e-01	k: 37811	n:120000
KS ci ratio: 1.041154e-01	ci left: 1.106677e-02	ci right 1.229033e-02	k: 1400	n:120000
CFI   120000 perm   29 sec   (4160 perm/sec)   p_kst 1.166667e-02   p_cons 3.150917e-01   p_joint 9.485833e-02

Joint ci ratio: 3.391258e-02	ci left: 9.161730e-02	ci right 9.478548e-02	k: 12115	n:130000
Cons ci ratio: 1.602376e-02	ci left: 3.127055e-01	ci right 3.177643e-01	k: 40980	n:130000
KS ci ratio: 1.006280e-01	ci left: 1.095749e-02	ci right 1.212599e-02	k: 1499	n:130000
CFI   130000 perm   32 sec   (4094 perm/sec)   p_kst 1.153077e-02   p_cons 3.152308e-01   p_joint 9.319231e-02

Joint ci ratio: 3.338488e-02	ci left: 8.815139e-02	ci right 9.115134e-02	k: 12550	n:140000
Cons ci ratio: 1.545197e-02	ci left: 3.124886e-01	ci right 3.173619e-01	k: 44089	n:140000
KS ci ratio: 9.716200e-02	ci left: 1.093412e-02	ci right 1.205767e-02	k: 1608	n:140000
CFI   140000 perm   35 sec   (4031 perm/sec)   p_kst 1.148571e-02   p_cons 3.149214e-01   p_joint 8.964286e-02

Outputting figure to mutsig2_images.part000000000036/CFI.2_1804_140000_0.011486_0.31492_0.089643.png
                gene_name: CFI
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.091 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000036
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 36 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1430>
Subject: Job 9893884: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1430>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000037> was used as the working directory.
Started at Sat Oct  6 00:02:38 2012
Results reported at Sat Oct  6 00:17:27 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000037.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000037.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 37  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000037.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    969.17 sec.
    Max Memory :      3588 MB
    Max Swap   :      5925 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
37
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 37
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 37: processing genes 3246 - 3336
Calculating significance of each gene.
Using projection method.
3246	CFP	3.407661e-01
3247	CFTR	3.360607e-01
3248	CGA	5.228813e-02
3249	CGB	1.620742e-01
3250	CGB1	1
3251	CGB2	2.231315e-01
3252	CGB5	1
3253	CGB7	1
3254	CGB8	1
3255	CGGBP1	2.914289e-01
3256	CGN	6.642850e-01
3257	CGNL1	4.420016e-01
3258	CGREF1	1
3259	CGRRF1	1
3260	CH25H	5.343051e-01
3261	CHAC1	6.504354e-01
3262	CHAC2	7.671901e-02
3263	CHAD	2.903873e-02
3264	CHAF1A	8.521499e-01
3265	CHAF1B	7.773220e-01
3266	CHAT	4.708863e-01
3267	CHCHD1	1
In gene CHCHD10 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 318     n = 1	mu =   8.55e-07
3268	CHCHD10	1.848501e-01
3269	CHCHD2	2.484803e-01
3270	CHCHD3	5.241541e-01
3271	CHCHD4	4.237017e-01
3272	CHCHD5	2.970852e-02
3273	CHCHD6	3.803309e-01
3274	CHCHD7	1
3275	CHCHD8	1
3276	CHD1	2.208342e-01
3277	CHD1L	9.047865e-01
3278	CHD2	2.255720e-01
3279	CHD3	7.392645e-01
In gene CHD4 the following bins exceed PROBCAP:
    READ-AG-3594	categ 6	N = 5894    n = 1	mu =   1.72e-07
3280	CHD4	4.932511e-03
3281	CHD5	7.882413e-01
3282	CHD6	1.437861e-01
3283	CHD7	8.589228e-01
3284	CHD8	9.862900e-01
3285	CHD9	5.860659e-01
3286	CHDH	7.102268e-01
3287	CHEK1	7.494205e-01
3288	CHEK2	8.337700e-01
3289	CHERP	8.058791e-01
3290	CHFR	4.673945e-01
3291	CHGA	5.714370e-01
3292	CHGB	3.401097e-01
3293	CHI3L1	5.725546e-01
3294	CHI3L2	3.822772e-01
3295	CHIA	2.461341e-01
3296	CHIC1	2.625803e-01
3297	CHIC2	6.462647e-01
3298	CHID1	8.983178e-01
3299	CHIT1	1.500204e-01
3300	CHKA	1.053896e-01
3301	CHKB	1
3302	CHL1	5.144157e-03
3303	CHM	9.365667e-01
3304	CHML	1.843423e-01
3305	CHMP1A	6.905328e-01
3306	CHMP1B	1
3307	CHMP2A	1.683384e-01
3308	CHMP2B	2.998781e-01
3309	CHMP4A	1
3310	CHMP4B	6.138909e-01
3311	CHMP4C	7.466714e-01
3312	CHMP5	2.620372e-01
3313	CHMP6	1
3314	CHMP7	8.531265e-01
3315	CHN1	4.797532e-01
3316	CHN2	4.813570e-01
3317	CHODL	4.774171e-02
3318	CHORDC1	3.466113e-01
3319	CHP	1
3320	CHP2	4.145641e-01
3321	CHPF	8.595540e-01
3322	CHPF2	7.216574e-01
3323	CHPT1	8.792230e-01
3324	CHRAC1	1
3325	CHRD	6.947825e-01
3326	CHRDL1	1.424814e-05
3327	CHRDL2	2.646334e-01
3328	CHRFAM7A	3.680579e-01
3329	CHRM1	3.893374e-01
3330	CHRM2	2.776218e-05
3331	CHRM3	4.181780e-01
3332	CHRM4	9.732276e-01
3333	CHRM5	7.182644e-01
3334	CHRNA1	1.623836e-01
3335	CHRNA10	1
3336	CHRNA2	4.637749e-01
Done

Running MutSig 2:
Scatter job 37: processing genes 3246 - 3336
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CHD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.217497e-01	ci left: 2.693317e-02	ci right 3.374407e-02	k: 302	n:10000
Cons ci ratio: 5.814273e-02	ci left: 3.033218e-01	ci right 3.215876e-01	k: 3124	n:10000
KS ci ratio: 6.710973e-01	ci left: 2.272624e-03	ci right 4.631334e-03	k: 33	n:10000
CHD4   10000 perm   3 sec   (3231 perm/sec)   p_kst 3.300000e-03   p_cons 3.124000e-01   p_joint 3.020000e-02

Joint ci ratio: 4.122633e-01	ci left: 3.575194e-03	ci right 5.473296e-03	k: 89	n:20000
Cons ci ratio: 4.270130e-02	ci left: 2.900760e-01	ci right 3.027833e-01	k: 5928	n:20000
KS ci ratio: 5.052976e-01	ci left: 2.246412e-03	ci right 3.803657e-03	k: 59	n:20000
CHD4   20000 perm   15 sec   (1322 perm/sec)   p_kst 2.950000e-03   p_cons 2.964000e-01   p_joint 4.450000e-03

Joint ci ratio: 2.468834e-01	ci left: 7.304536e-03	ci right 9.392360e-03	k: 249	n:30000
Cons ci ratio: 3.493110e-02	ci left: 2.904729e-01	ci right 3.008333e-01	k: 8869	n:30000
KS ci ratio: 3.994361e-01	ci left: 2.562755e-03	ci right 3.869722e-03	k: 95	n:30000
CHD4   30000 perm   19 sec   (1583 perm/sec)   p_kst 3.166667e-03   p_cons 2.956333e-01   p_joint 8.300000e-03

Joint ci ratio: 2.386457e-01	ci left: 5.900505e-03	ci right 7.522355e-03	k: 267	n:40000
Cons ci ratio: 3.029973e-02	ci left: 2.905085e-01	ci right 2.994713e-01	k: 11799	n:40000
KS ci ratio: 3.343300e-01	ci left: 2.853357e-03	ci right 4.020568e-03	k: 136	n:40000
CHD4   40000 perm   23 sec   (1742 perm/sec)   p_kst 3.400000e-03   p_cons 2.949750e-01   p_joint 6.675000e-03

Joint ci ratio: 2.434157e-01	ci left: 4.532077e-03	ci right 5.806414e-03	k: 257	n:50000
Cons ci ratio: 2.727524e-02	ci left: 2.883355e-01	ci right 2.963286e-01	k: 14616	n:50000
KS ci ratio: 2.932901e-01	ci left: 3.038414e-03	ci right 4.100509e-03	k: 177	n:50000
CHD4   50000 perm   27 sec   (1853 perm/sec)   p_kst 3.540000e-03   p_cons 2.923200e-01   p_joint 5.140000e-03

Joint ci ratio: 2.402693e-01	ci left: 3.886166e-03	ci right 4.962636e-03	k: 264	n:60000
Cons ci ratio: 2.490620e-02	ci left: 2.885629e-01	ci right 2.958572e-01	k: 17532	n:60000
KS ci ratio: 2.681146e-01	ci left: 3.074367e-03	ci right 4.041300e-03	k: 212	n:60000
CHD4   60000 perm   31 sec   (1922 perm/sec)   p_kst 3.533333e-03   p_cons 2.922000e-01   p_joint 4.400000e-03

Joint ci ratio: 1.745036e-01	ci left: 6.532365e-03	ci right 7.794720e-03	k: 500	n:70000
Cons ci ratio: 2.302460e-02	ci left: 2.894448e-01	ci right 2.962010e-01	k: 20497	n:70000
KS ci ratio: 2.460008e-01	ci left: 3.169864e-03	ci right 4.072053e-03	k: 252	n:70000
CHD4   70000 perm   35 sec   (1974 perm/sec)   p_kst 3.600000e-03   p_cons 2.928143e-01   p_joint 7.142857e-03

Joint ci ratio: 1.776409e-01	ci left: 5.512421e-03	ci right 6.598869e-03	k: 483	n:80000
Cons ci ratio: 2.155920e-02	ci left: 2.892493e-01	ci right 2.955657e-01	k: 23392	n:80000
KS ci ratio: 2.313783e-01	ci left: 3.161479e-03	ci right 4.000156e-03	k: 285	n:80000
CHD4   80000 perm   40 sec   (2010 perm/sec)   p_kst 3.562500e-03   p_cons 2.924000e-01   p_joint 6.037500e-03

Joint ci ratio: 1.729166e-01	ci left: 5.186692e-03	ci right 6.178910e-03	k: 510	n:90000
Cons ci ratio: 2.034376e-02	ci left: 2.890750e-01	ci right 2.950273e-01	k: 26284	n:90000
KS ci ratio: 2.197798e-01	ci left: 3.135190e-03	ci right 3.919569e-03	k: 316	n:90000
CHD4   90000 perm   44 sec   (2041 perm/sec)   p_kst 3.511111e-03   p_cons 2.920444e-01   p_joint 5.666667e-03

Joint ci ratio: 1.587551e-01	ci left: 5.578745e-03	ci right 6.550240e-03	k: 605	n:100000
Cons ci ratio: 1.932622e-02	ci left: 2.886645e-01	ci right 2.943076e-01	k: 29148	n:100000
KS ci ratio: 2.068062e-01	ci left: 3.209800e-03	ci right 3.959448e-03	k: 357	n:100000
CHD4   100000 perm   48 sec   (2063 perm/sec)   p_kst 3.570000e-03   p_cons 2.914800e-01   p_joint 6.050000e-03

Joint ci ratio: 1.447026e-01	ci left: 6.147523e-03	ci right 7.115129e-03	k: 728	n:110000
Cons ci ratio: 1.841665e-02	ci left: 2.890239e-01	ci right 2.944053e-01	k: 32088	n:110000
KS ci ratio: 2.004787e-01	ci left: 3.116414e-03	ci right 3.819257e-03	k: 380	n:110000
CHD4   110000 perm   53 sec   (2075 perm/sec)   p_kst 3.454545e-03   p_cons 2.917091e-01   p_joint 6.618182e-03

Joint ci ratio: 1.418357e-01	ci left: 5.876208e-03	ci right 6.781231e-03	k: 758	n:120000
Cons ci ratio: 1.764263e-02	ci left: 2.889047e-01	ci right 2.940554e-01	k: 34977	n:120000
KS ci ratio: 1.904860e-01	ci left: 3.181677e-03	ci right 3.859333e-03	k: 421	n:120000
CHD4   120000 perm   58 sec   (2077 perm/sec)   p_kst 3.508333e-03   p_cons 2.914750e-01   p_joint 6.316667e-03

Joint ci ratio: 1.379054e-01	ci left: 5.750784e-03	ci right 6.609929e-03	k: 802	n:130000
Cons ci ratio: 1.696655e-02	ci left: 2.886161e-01	ci right 2.935625e-01	k: 37841	n:130000
KS ci ratio: 1.820499e-01	ci left: 3.230290e-03	ci right 3.884471e-03	k: 461	n:130000
CHD4   130000 perm   62 sec   (2084 perm/sec)   p_kst 3.546154e-03   p_cons 2.910846e-01   p_joint 6.169231e-03

Joint ci ratio: 1.301001e-01	ci left: 6.023520e-03	ci right 6.868546e-03	k: 901	n:140000
Cons ci ratio: 1.637543e-02	ci left: 2.880514e-01	ci right 2.928144e-01	k: 40660	n:140000
KS ci ratio: 1.751697e-01	ci left: 3.252031e-03	ci right 3.883091e-03	k: 498	n:140000
CHD4   140000 perm   67 sec   (2088 perm/sec)   p_kst 3.557143e-03   p_cons 2.904286e-01   p_joint 6.435714e-03

Joint ci ratio: 1.264434e-01	ci left: 5.963936e-03	ci right 6.775322e-03	k: 954	n:150000
Cons ci ratio: 1.582845e-02	ci left: 2.879173e-01	ci right 2.925175e-01	k: 43532	n:150000
KS ci ratio: 1.704571e-01	ci left: 3.213817e-03	ci right 3.818958e-03	k: 526	n:150000
CHD4   150000 perm   72 sec   (2090 perm/sec)   p_kst 3.506667e-03   p_cons 2.902133e-01   p_joint 6.360000e-03

Joint ci ratio: 1.236975e-01	ci left: 5.851511e-03	ci right 6.629045e-03	k: 997	n:160000
Cons ci ratio: 1.532169e-02	ci left: 2.881016e-01	ci right 2.925560e-01	k: 46452	n:160000
KS ci ratio: 1.664065e-01	ci left: 3.168597e-03	ci right 3.749625e-03	k: 552	n:160000
CHD4   160000 perm   77 sec   (2082 perm/sec)   p_kst 3.450000e-03   p_cons 2.903250e-01   p_joint 6.231250e-03

Joint ci ratio: 1.299575e-01	ci left: 4.977443e-03	ci right 5.674884e-03	k: 904	n:170000
Cons ci ratio: 1.403791e-02	ci left: 3.122402e-01	ci right 3.166602e-01	k: 53456	n:170000
KS ci ratio: 1.622104e-01	ci left: 3.145780e-03	ci right 3.706659e-03	k: 581	n:170000
CHD4   170000 perm   82 sec   (2077 perm/sec)   p_kst 3.417647e-03   p_cons 3.144471e-01   p_joint 5.317647e-03

Joint ci ratio: 1.223914e-01	ci left: 5.319713e-03	ci right 6.018575e-03	k: 1019	n:180000
Cons ci ratio: 1.364090e-02	ci left: 3.123497e-01	ci right 3.166452e-01	k: 56609	n:180000
KS ci ratio: 1.583164e-01	ci left: 3.125662e-03	ci right 3.668304e-03	k: 610	n:180000
CHD4   180000 perm   87 sec   (2068 perm/sec)   p_kst 3.388889e-03   p_cons 3.144944e-01   p_joint 5.661111e-03

Joint ci ratio: 1.204659e-01	ci left: 5.208118e-03	ci right 5.880787e-03	k: 1052	n:190000
Cons ci ratio: 1.328113e-02	ci left: 3.122758e-01	ci right 3.164561e-01	k: 59729	n:190000
KS ci ratio: 1.552999e-01	ci left: 3.082507e-03	ci right 3.606511e-03	k: 634	n:190000
CHD4   190000 perm   92 sec   (2062 perm/sec)   p_kst 3.336842e-03   p_cons 3.143632e-01   p_joint 5.536842e-03

Joint ci ratio: 1.004965e-01	ci left: 7.170408e-03	ci right 7.933970e-03	k: 1509	n:200000
Cons ci ratio: 1.294360e-02	ci left: 3.123704e-01	ci right 3.164449e-01	k: 62881	n:200000
KS ci ratio: 1.507377e-01	ci left: 3.115920e-03	ci right 3.628641e-03	k: 673	n:200000
CHD4   200000 perm   97 sec   (2056 perm/sec)   p_kst 3.365000e-03   p_cons 3.144050e-01   p_joint 7.545000e-03

Joint ci ratio: 1.058335e-01	ci left: 6.146835e-03	ci right 6.838322e-03	k: 1362	n:210000
Cons ci ratio: 1.261829e-02	ci left: 3.128756e-01	ci right 3.168533e-01	k: 66121	n:210000
KS ci ratio: 1.473874e-01	ci left: 3.109656e-03	ci right 3.608970e-03	k: 704	n:210000
CHD4   210000 perm   103 sec   (2042 perm/sec)   p_kst 3.352381e-03   p_cons 3.148619e-01   p_joint 6.485714e-03

Joint ci ratio: 1.040218e-01	ci left: 6.079878e-03	ci right 6.751408e-03	k: 1410	n:220000
Cons ci ratio: 1.232009e-02	ci left: 3.132043e-01	ci right 3.170914e-01	k: 69332	n:220000
KS ci ratio: 1.434706e-01	ci left: 3.139134e-03	ci right 3.628640e-03	k: 743	n:220000
CHD4   220000 perm   108 sec   (2032 perm/sec)   p_kst 3.377273e-03   p_cons 3.151455e-01   p_joint 6.409091e-03

Joint ci ratio: 1.028333e-01	ci left: 5.955283e-03	ci right 6.605080e-03	k: 1443	n:230000
Cons ci ratio: 1.203976e-02	ci left: 3.135879e-01	ci right 3.173906e-01	k: 72562	n:230000
KS ci ratio: 1.406639e-01	ci left: 3.128447e-03	ci right 3.605943e-03	k: 773	n:230000
CHD4   230000 perm   114 sec   (2023 perm/sec)   p_kst 3.360870e-03   p_cons 3.154870e-01   p_joint 6.273913e-03

Joint ci ratio: 1.006945e-01	ci left: 5.958905e-03	ci right 6.594774e-03	k: 1505	n:240000
Cons ci ratio: 1.179274e-02	ci left: 3.133913e-01	ci right 3.171131e-01	k: 75660	n:240000
KS ci ratio: 1.371624e-01	ci left: 3.158973e-03	ci right 3.628146e-03	k: 813	n:240000
CHD4   240000 perm   119 sec   (2013 perm/sec)   p_kst 3.387500e-03   p_cons 3.152500e-01   p_joint 6.270833e-03

Joint ci ratio: 9.252903e-02	ci left: 6.798048e-03	ci right 7.461456e-03	k: 1781	n:250000
Cons ci ratio: 1.154951e-02	ci left: 3.136146e-01	ci right 3.172617e-01	k: 78859	n:250000
KS ci ratio: 1.346237e-01	ci left: 3.152398e-03	ci right 3.611235e-03	k: 844	n:250000
CHD4   250000 perm   125 sec   (2001 perm/sec)   p_kst 3.376000e-03   p_cons 3.154360e-01   p_joint 7.124000e-03

Joint ci ratio: 9.078845e-02	ci left: 6.795885e-03	ci right 7.445944e-03	k: 1850	n:260000
Cons ci ratio: 1.131770e-02	ci left: 3.139366e-01	ci right 3.175137e-01	k: 82088	n:260000
KS ci ratio: 1.312474e-01	ci left: 3.194760e-03	ci right 3.647191e-03	k: 888	n:260000
CHD4   260000 perm   131 sec   (1989 perm/sec)   p_kst 3.415385e-03   p_cons 3.157231e-01   p_joint 7.115385e-03

Joint ci ratio: 8.942442e-02	ci left: 6.750532e-03	ci right 7.386044e-03	k: 1907	n:270000
Cons ci ratio: 1.110645e-02	ci left: 3.139580e-01	ci right 3.174681e-01	k: 85242	n:270000
KS ci ratio: 1.284587e-01	ci left: 3.216190e-03	ci right 3.661241e-03	k: 927	n:270000
CHD4   270000 perm   137 sec   (1977 perm/sec)   p_kst 3.433333e-03   p_cons 3.157111e-01   p_joint 7.062963e-03

Joint ci ratio: 8.892107e-02	ci left: 6.586236e-03	ci right 7.202608e-03	k: 1929	n:280000
Cons ci ratio: 1.090254e-02	ci left: 3.141390e-01	ci right 3.175862e-01	k: 88441	n:280000
KS ci ratio: 1.263002e-01	ci left: 3.211969e-03	ci right 3.648408e-03	k: 959	n:280000
CHD4   280000 perm   142 sec   (1965 perm/sec)   p_kst 3.425000e-03   p_cons 3.158607e-01   p_joint 6.889286e-03

Joint ci ratio: 8.779404e-02	ci left: 6.527720e-03	ci right 7.130475e-03	k: 1979	n:290000
Cons ci ratio: 1.071503e-02	ci left: 3.140842e-01	ci right 3.174712e-01	k: 91575	n:290000
KS ci ratio: 1.244990e-01	ci left: 3.194733e-03	ci right 3.622183e-03	k: 987	n:290000
CHD4   290000 perm   149 sec   (1951 perm/sec)   p_kst 3.403448e-03   p_cons 3.157759e-01   p_joint 6.824138e-03

Joint ci ratio: 8.392332e-02	ci left: 6.916879e-03	ci right 7.526032e-03	k: 2165	n:300000
Cons ci ratio: 1.052866e-02	ci left: 3.143698e-01	ci right 3.177005e-01	k: 94810	n:300000
KS ci ratio: 1.227727e-01	ci left: 3.178687e-03	ci right 3.597664e-03	k: 1015	n:300000
CHD4   300000 perm   155 sec   (1937 perm/sec)   p_kst 3.383333e-03   p_cons 3.160333e-01   p_joint 7.216667e-03

Joint ci ratio: 8.504741e-02	ci left: 6.516868e-03	ci right 7.098861e-03	k: 2109	n:310000
Cons ci ratio: 1.035763e-02	ci left: 3.143893e-01	ci right 3.176658e-01	k: 97968	n:310000
KS ci ratio: 1.211745e-01	ci left: 3.160586e-03	ci right 3.571365e-03	k: 1042	n:310000
CHD4   310000 perm   161 sec   (1921 perm/sec)   p_kst 3.361290e-03   p_cons 3.160258e-01   p_joint 6.803226e-03

Joint ci ratio: 8.433530e-02	ci left: 6.423320e-03	ci right 6.991918e-03	k: 2145	n:320000
Cons ci ratio: 1.019321e-02	ci left: 3.144704e-01	ci right 3.176954e-01	k: 101146	n:320000
KS ci ratio: 1.194134e-01	ci left: 3.155777e-03	ci right 3.559549e-03	k: 1073	n:320000
CHD4   320000 perm   168 sec   (1908 perm/sec)   p_kst 3.353125e-03   p_cons 3.160812e-01   p_joint 6.703125e-03

Joint ci ratio: 8.502453e-02	ci left: 6.127786e-03	ci right 6.674875e-03	k: 2111	n:330000
Cons ci ratio: 1.003763e-02	ci left: 3.144926e-01	ci right 3.176682e-01	k: 104306	n:330000
KS ci ratio: 1.176202e-01	ci left: 3.157183e-03	ci right 3.554647e-03	k: 1106	n:330000
CHD4   330000 perm   174 sec   (1894 perm/sec)   p_kst 3.351515e-03   p_cons 3.160788e-01   p_joint 6.396970e-03

Joint ci ratio: 8.405692e-02	ci left: 6.088623e-03	ci right 6.625725e-03	k: 2160	n:340000
Cons ci ratio: 9.889043e-03	ci left: 3.145108e-01	ci right 3.176394e-01	k: 107465	n:340000
KS ci ratio: 1.164706e-01	ci left: 3.127133e-03	ci right 3.516702e-03	k: 1128	n:340000
CHD4   340000 perm   181 sec   (1882 perm/sec)   p_kst 3.317647e-03   p_cons 3.160735e-01   p_joint 6.352941e-03

Joint ci ratio: 8.321638e-02	ci left: 6.037740e-03	ci right 6.564770e-03	k: 2204	n:350000
Cons ci ratio: 9.741324e-03	ci left: 3.147737e-01	ci right 3.178579e-01	k: 110710	n:350000
KS ci ratio: 1.155556e-01	ci left: 3.087719e-03	ci right 3.469149e-03	k: 1146	n:350000
CHD4   350000 perm   187 sec   (1870 perm/sec)   p_kst 3.274286e-03   p_cons 3.163143e-01   p_joint 6.297143e-03

Joint ci ratio: 7.983315e-02	ci left: 6.387092e-03	ci right 6.920896e-03	k: 2394	n:360000
Cons ci ratio: 9.605024e-03	ci left: 3.147977e-01	ci right 3.178386e-01	k: 113874	n:360000
KS ci ratio: 1.141225e-01	ci left: 3.080190e-03	ci right 3.455653e-03	k: 1175	n:360000
CHD4   360000 perm   194 sec   (1857 perm/sec)   p_kst 3.263889e-03   p_cons 3.163167e-01   p_joint 6.650000e-03

Joint ci ratio: 8.107618e-02	ci left: 6.023742e-03	ci right 6.535388e-03	k: 2322	n:370000
Cons ci ratio: 9.475947e-03	ci left: 3.147450e-01	ci right 3.177444e-01	k: 117010	n:370000
KS ci ratio: 1.122287e-01	ci left: 3.101992e-03	ci right 3.473422e-03	k: 1215	n:370000
CHD4   370000 perm   201 sec   (1843 perm/sec)   p_kst 3.283784e-03   p_cons 3.162432e-01   p_joint 6.275676e-03

Joint ci ratio: 8.026991e-02	ci left: 5.986407e-03	ci right 6.489588e-03	k: 2369	n:380000
Cons ci ratio: 9.347103e-03	ci left: 3.149188e-01	ci right 3.178788e-01	k: 120231	n:380000
KS ci ratio: 1.108252e-01	ci left: 3.099663e-03	ci right 3.465871e-03	k: 1246	n:380000
CHD4   380000 perm   207 sec   (1832 perm/sec)   p_kst 3.278947e-03   p_cons 3.163974e-01   p_joint 6.234211e-03

Joint ci ratio: 7.810107e-02	ci left: 6.167205e-03	ci right 6.670940e-03	k: 2502	n:390000
Cons ci ratio: 9.223319e-03	ci left: 3.150865e-01	ci right 3.180086e-01	k: 123453	n:390000
KS ci ratio: 1.094301e-01	ci left: 3.099976e-03	ci right 3.461313e-03	k: 1278	n:390000
CHD4   390000 perm   214 sec   (1820 perm/sec)   p_kst 3.276923e-03   p_cons 3.165462e-01   p_joint 6.415385e-03

Joint ci ratio: 7.843918e-02	ci left: 5.961528e-03	ci right 6.450667e-03	k: 2481	n:400000
Cons ci ratio: 9.105587e-03	ci left: 3.151861e-01	ci right 3.180716e-01	k: 126651	n:400000
KS ci ratio: 1.083355e-01	ci left: 3.085705e-03	ci right 3.441551e-03	k: 1304	n:400000
CHD4   400000 perm   221 sec   (1808 perm/sec)   p_kst 3.260000e-03   p_cons 3.166275e-01   p_joint 6.202500e-03

Joint ci ratio: 7.487119e-02	ci left: 6.392719e-03	ci right 6.892341e-03	k: 2722	n:410000
Cons ci ratio: 8.989971e-03	ci left: 3.153907e-01	ci right 3.182412e-01	k: 129894	n:410000
KS ci ratio: 1.067114e-01	ci left: 3.105383e-03	ci right 3.457792e-03	k: 1344	n:410000
CHD4   410000 perm   228 sec   (1796 perm/sec)   p_kst 3.278049e-03   p_cons 3.168146e-01   p_joint 6.639024e-03

Joint ci ratio: 7.399339e-02	ci left: 6.392393e-03	ci right 6.885879e-03	k: 2787	n:420000
Cons ci ratio: 8.881481e-03	ci left: 3.154478e-01	ci right 3.182643e-01	k: 133079	n:420000
KS ci ratio: 1.052727e-01	ci left: 3.117206e-03	ci right 3.465893e-03	k: 1381	n:420000
CHD4   420000 perm   236 sec   (1783 perm/sec)   p_kst 3.288095e-03   p_cons 3.168548e-01   p_joint 6.635714e-03

Joint ci ratio: 7.288901e-02	ci left: 6.437782e-03	ci right 6.927041e-03	k: 2872	n:430000
Cons ci ratio: 8.778476e-03	ci left: 3.154212e-01	ci right 3.182046e-01	k: 136229	n:430000
KS ci ratio: 1.039642e-01	ci left: 3.123979e-03	ci right 3.468814e-03	k: 1416	n:430000
CHD4   430000 perm   243 sec   (1769 perm/sec)   p_kst 3.293023e-03   p_cons 3.168116e-01   p_joint 6.679070e-03

Joint ci ratio: 7.002039e-02	ci left: 6.824995e-03	ci right 7.322439e-03	k: 3111	n:440000
Cons ci ratio: 8.678382e-03	ci left: 3.154254e-01	ci right 3.181770e-01	k: 139392	n:440000
KS ci ratio: 1.024558e-01	ci left: 3.145972e-03	ci right 3.487893e-03	k: 1458	n:440000
CHD4   440000 perm   251 sec   (1756 perm/sec)   p_kst 3.313636e-03   p_cons 3.168000e-01   p_joint 7.070455e-03

Joint ci ratio: 6.934482e-02	ci left: 6.806519e-03	ci right 7.297638e-03	k: 3172	n:450000
Cons ci ratio: 8.578288e-03	ci left: 3.155984e-01	ci right 3.183195e-01	k: 142631	n:450000
KS ci ratio: 1.015558e-01	ci left: 3.132364e-03	ci right 3.469637e-03	k: 1484	n:450000
CHD4   450000 perm   258 sec   (1743 perm/sec)   p_kst 3.297778e-03   p_cons 3.169578e-01   p_joint 7.048889e-03

Joint ci ratio: 6.859237e-02	ci left: 6.808101e-03	ci right 7.293791e-03	k: 3242	n:460000
Cons ci ratio: 8.484261e-03	ci left: 3.156272e-01	ci right 3.183186e-01	k: 145807	n:460000
KS ci ratio: 1.003795e-01	ci left: 3.138435e-03	ci right 3.472217e-03	k: 1519	n:460000
CHD4   460000 perm   266 sec   (1730 perm/sec)   p_kst 3.302174e-03   p_cons 3.169717e-01   p_joint 7.047826e-03

Joint ci ratio: 6.850190e-02	ci left: 6.682054e-03	ci right 7.158098e-03	k: 3251	n:470000
Cons ci ratio: 8.391940e-03	ci left: 3.157229e-01	ci right 3.183857e-01	k: 149015	n:470000
KS ci ratio: 9.950033e-02	ci left: 3.127670e-03	ci right 3.457224e-03	k: 1546	n:470000
CHD4   470000 perm   274 sec   (1718 perm/sec)   p_kst 3.289362e-03   p_cons 3.170532e-01   p_joint 6.917021e-03

Outputting figure to mutsig2_images.part000000000037/CHD4.19_5895_470000_0.0032894_0.31705_0.006917.png
                gene_name: CHD4
               theta_stop: 0.100 
                    nperm: 470000 
                     p_ks: 0.0033 
        ci_ks_bounds_left: 0.0031 
       ci_ks_bounds_right: 0.0035 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.0069 
     ci_joint_bounds_left: 0.0067 
    ci_joint_bounds_right: 0.0072 

Current progress: 2 percent done.
CHD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.365513e-02	ci left: 4.365237e-01	ci right 4.561076e-01	k: 4463	n:10000
Cons ci ratio: 2.061858e-02	ci left: 7.750931e-01	ci right 7.913416e-01	k: 7833	n:10000
KS ci ratio: 5.874346e-02	ci left: 2.989585e-01	ci right 3.171535e-01	k: 3080	n:10000
CHD6   10000 perm   4 sec   (2838 perm/sec)   p_kst 3.080000e-01   p_cons 7.833000e-01   p_joint 4.463000e-01

Outputting figure to mutsig2_images.part000000000037/CHD6.19_8292_10000_0.308_0.7833_0.4463.png
                gene_name: CHD6
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 4 percent done.
CHD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.666854e-02	ci left: 2.482593e-01	ci right 2.654825e-01	k: 2568	n:10000
Cons ci ratio: 6.066330e-03	ci left: 9.735507e-01	ci right 9.795672e-01	k: 9767	n:10000
KS ci ratio: 8.958253e-02	ci left: 1.534534e-01	ci right 1.679449e-01	k: 1606	n:10000
CHD9   10000 perm   4 sec   (2637 perm/sec)   p_kst 1.606000e-01   p_cons 9.767000e-01   p_joint 2.568000e-01

Outputting figure to mutsig2_images.part000000000037/CHD9.18_8798_10000_0.1606_0.9767_0.2568.png
                gene_name: CHD9
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 6 percent done.
CHL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.695073e-02	ci left: 8.352108e-01	ci right 8.495891e-01	k: 8425	n:10000
Cons ci ratio: 5.784639e-02	ci left: 3.055038e-01	ci right 3.238042e-01	k: 3146	n:10000
KS ci ratio: 1.115117e-02	ci left: 9.198691e-01	ci right 9.302817e-01	k: 9252	n:10000
CHL1   10000 perm   2 sec   (4014 perm/sec)   p_kst 9.252000e-01   p_cons 3.146000e-01   p_joint 8.425000e-01

Outputting figure to mutsig2_images.part000000000037/CHL1.18_3779_10000_0.9252_0.3146_0.8425.png
                gene_name: CHL1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 8 percent done.
CHD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.983219e-02	ci left: 2.311621e-01	ci right 2.479899e-01	k: 2395	n:10000
Cons ci ratio: 2.594843e-02	ci left: 6.861727e-01	ci right 7.043134e-01	k: 6953	n:10000
KS ci ratio: 9.707249e-02	ci left: 1.333527e-01	ci right 1.470577e-01	k: 1401	n:10000
CHD5   10000 perm   3 sec   (3534 perm/sec)   p_kst 1.401000e-01   p_cons 6.953000e-01   p_joint 2.395000e-01

Outputting figure to mutsig2_images.part000000000037/CHD5.13_6029_10000_0.1401_0.6953_0.2395.png
                gene_name: CHD5
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 9 percent done.
CFTR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.154896e-01	ci left: 9.730358e-02	ci right 1.093286e-01	k: 1032	n:10000
Cons ci ratio: 1.394779e-01	ci left: 6.807308e-02	ci right 7.837719e-02	k: 731	n:10000
KS ci ratio: 5.613456e-02	ci left: 3.185017e-01	ci right 3.369988e-01	k: 3277	n:10000
CFTR   10000 perm   3 sec   (3782 perm/sec)   p_kst 3.277000e-01   p_cons 7.310000e-02   p_joint 1.032000e-01

Joint ci ratio: 6.555871e-02	ci left: 1.466556e-01	ci right 1.566459e-01	k: 3032	n:20000
Cons ci ratio: 9.758882e-02	ci left: 7.099564e-02	ci right 7.832859e-02	k: 1492	n:20000
KS ci ratio: 3.954054e-02	ci left: 3.229362e-01	ci right 3.360134e-01	k: 6589	n:20000
CFTR   20000 perm   6 sec   (3462 perm/sec)   p_kst 3.294500e-01   p_cons 7.460000e-02   p_joint 1.516000e-01

Outputting figure to mutsig2_images.part000000000037/CFTR.12_4551_20000_0.32945_0.0746_0.1516.png
                gene_name: CFTR
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 11 percent done.
CHD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.300599e-02	ci left: 5.753695e-01	ci right 5.947809e-01	k: 5851	n:10000
Cons ci ratio: 2.374855e-02	ci left: 7.226973e-01	ci right 7.401677e-01	k: 7315	n:10000
KS ci ratio: 4.634174e-02	ci left: 4.073115e-01	ci right 4.267369e-01	k: 4170	n:10000
CHD3   10000 perm   3 sec   (3169 perm/sec)   p_kst 4.170000e-01   p_cons 7.315000e-01   p_joint 5.851000e-01

Outputting figure to mutsig2_images.part000000000037/CHD3.12_6444_10000_0.417_0.7315_0.5851.png
                gene_name: CHD3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 13 percent done.
CHRDL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.347064e-02	ci left: 7.273436e-01	ci right 7.447187e-01	k: 7361	n:10000
Cons ci ratio: 1.178264e-02	ci left: 9.116264e-01	ci right 9.225292e-01	k: 9172	n:10000
KS ci ratio: 3.844883e-02	ci left: 4.997504e-01	ci right 5.194440e-01	k: 5096	n:10000
CHRDL1   10000 perm   2 sec   (4506 perm/sec)   p_kst 5.096000e-01   p_cons 9.172000e-01   p_joint 7.361000e-01

Outputting figure to mutsig2_images.part000000000037/CHRDL1.12_1421_10000_0.5096_0.9172_0.7361.png
                gene_name: CHRDL1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 15 percent done.
CHD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.701526e-02	ci left: 4.003376e-01	ci right 4.197148e-01	k: 4100	n:10000
Cons ci ratio: 1.005822e-02	ci left: 9.334051e-01	ci right 9.429377e-01	k: 9383	n:10000
KS ci ratio: 6.703721e-02	ci left: 2.461830e-01	ci right 2.633601e-01	k: 2547	n:10000
CHD2   10000 perm   3 sec   (3538 perm/sec)   p_kst 2.547000e-01   p_cons 9.383000e-01   p_joint 4.100000e-01

Outputting figure to mutsig2_images.part000000000037/CHD2.11_5643_10000_0.2547_0.9383_0.41.png
                gene_name: CHD2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 17 percent done.
CHD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.171404e-01	ci left: 9.477139e-02	ci right 1.066624e-01	k: 1006	n:10000
Cons ci ratio: 6.080366e-02	ci left: 2.845862e-01	ci right 3.025342e-01	k: 2935	n:10000
KS ci ratio: 1.991394e-01	ci left: 3.357607e-02	ci right 4.109654e-02	k: 372	n:10000
CHD7   10000 perm   4 sec   (2805 perm/sec)   p_kst 3.720000e-02   p_cons 2.935000e-01   p_joint 1.006000e-01

Joint ci ratio: 1.172236e-01	ci left: 4.983805e-02	ci right 5.609272e-02	k: 1058	n:20000
Cons ci ratio: 4.278847e-02	ci left: 2.892313e-01	ci right 3.019281e-01	k: 5911	n:20000
KS ci ratio: 1.400379e-01	ci left: 3.505436e-02	ci right 4.038113e-02	k: 753	n:20000
CHD7   20000 perm   8 sec   (2599 perm/sec)   p_kst 3.765000e-02   p_cons 2.955500e-01   p_joint 5.290000e-02

Joint ci ratio: 1.008634e-01	ci left: 4.551066e-02	ci right 5.037737e-02	k: 1437	n:30000
Cons ci ratio: 3.517869e-02	ci left: 2.875549e-01	ci right 2.978853e-01	k: 8781	n:30000
KS ci ratio: 1.144466e-01	ci left: 3.547563e-02	ci right 3.981450e-02	k: 1128	n:30000
CHD7   30000 perm   12 sec   (2518 perm/sec)   p_kst 3.760000e-02   p_cons 2.927000e-01   p_joint 4.790000e-02

Joint ci ratio: 7.664815e-02	ci left: 5.901773e-02	ci right 6.374619e-02	k: 2454	n:40000
Cons ci ratio: 3.034532e-02	ci left: 2.898863e-01	ci right 2.988436e-01	k: 11774	n:40000
KS ci ratio: 9.824692e-02	ci left: 3.639149e-02	ci right 4.017592e-02	k: 1530	n:40000
CHD7   40000 perm   16 sec   (2470 perm/sec)   p_kst 3.825000e-02   p_cons 2.943500e-01   p_joint 6.135000e-02

Outputting figure to mutsig2_images.part000000000037/CHD7.11_9142_40000_0.03825_0.29435_0.06135.png
                gene_name: CHD7
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.064 

Current progress: 19 percent done.
CHRM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.121569e-02	ci left: 6.022673e-01	ci right 6.214675e-01	k: 6119	n:10000
KS ci ratio: 1.621682e-02	ci left: 8.468243e-01	ci right 8.607689e-01	k: 8539	n:10000
CHRM2   10000 perm   2 sec   (4903 perm/sec)   p_kst 8.539000e-01   p_cons 6.119000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHRM2.11_1405_10000_0.8539_0.6119_1.png
                gene_name: CHRM2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
CHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.553251e-02	ci left: 1.371732e-01	ci right 1.510349e-01	k: 1440	n:10000
Cons ci ratio: 2.252919e-02	ci left: 7.431099e-01	ci right 7.601433e-01	k: 7517	n:10000
KS ci ratio: 1.292744e-01	ci left: 7.873206e-02	ci right 8.971158e-02	k: 841	n:10000
CHD1   10000 perm   3 sec   (3691 perm/sec)   p_kst 8.410000e-02   p_cons 7.517000e-01   p_joint 1.440000e-01

Joint ci ratio: 7.536455e-02	ci left: 1.146416e-01	ci right 1.236695e-01	k: 2382	n:20000
Cons ci ratio: 1.584746e-02	ci left: 7.476167e-01	ci right 7.596094e-01	k: 15073	n:20000
KS ci ratio: 9.415636e-02	ci left: 7.598287e-02	ci right 8.353984e-02	k: 1594	n:20000
CHD1   20000 perm   6 sec   (3367 perm/sec)   p_kst 7.970000e-02   p_cons 7.536500e-01   p_joint 1.191000e-01

Outputting figure to mutsig2_images.part000000000037/CHD1.10_5273_20000_0.0797_0.75365_0.1191.png
                gene_name: CHD1
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 23 percent done.
CGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.709095e-02	ci left: 8.329712e-01	ci right 8.474300e-01	k: 8403	n:10000
KS ci ratio: 2.384527e-02	ci left: 7.210814e-01	ci right 7.385845e-01	k: 7299	n:10000
CGN   10000 perm   2 sec   (4784 perm/sec)   p_kst 7.299000e-01   p_cons 8.403000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CGN.7_3692_10000_0.7299_0.8403_1.png
                gene_name: CGN
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
CGNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.083093e-02	ci left: 7.715474e-01	ci right 7.878893e-01	k: 7798	n:10000
Cons ci ratio: 2.607707e-02	ci left: 6.840560e-01	ci right 7.022314e-01	k: 6932	n:10000
KS ci ratio: 2.876252e-02	ci left: 6.405589e-01	ci right 6.593536e-01	k: 6500	n:10000
CGNL1   10000 perm   3 sec   (3766 perm/sec)   p_kst 6.500000e-01   p_cons 6.932000e-01   p_joint 7.798000e-01

Outputting figure to mutsig2_images.part000000000037/CGNL1.7_3981_10000_0.65_0.6932_0.7798.png
                gene_name: CGNL1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 26 percent done.
CHAD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.992248e-02	ci left: 6.222595e-01	ci right 6.412637e-01	k: 6318	n:10000
Cons ci ratio: 1.985756e-02	ci left: 7.877635e-01	ci right 8.036639e-01	k: 7958	n:10000
KS ci ratio: 4.320754e-02	ci left: 4.416119e-01	ci right 4.612164e-01	k: 4514	n:10000
CHAD   10000 perm   2 sec   (5427 perm/sec)   p_kst 4.514000e-01   p_cons 7.958000e-01   p_joint 6.318000e-01

Outputting figure to mutsig2_images.part000000000037/CHAD.7_1092_10000_0.4514_0.7958_0.6318.png
                gene_name: CHAD
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 28 percent done.
CHAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.485854e-02	ci left: 4.231596e-01	ci right 4.426795e-01	k: 4329	n:10000
Cons ci ratio: 7.248048e-02	ci left: 2.180307e-01	ci right 2.345290e-01	k: 2262	n:10000
KS ci ratio: 4.883062e-02	ci left: 3.822151e-01	ci right 4.014480e-01	k: 3918	n:10000
CHAT   10000 perm   2 sec   (4707 perm/sec)   p_kst 3.918000e-01   p_cons 2.262000e-01   p_joint 4.329000e-01

Outputting figure to mutsig2_images.part000000000037/CHAT.6_2351_10000_0.3918_0.2262_0.4329.png
                gene_name: CHAT
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 30 percent done.
CHD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.636594e-02	ci left: 8.444801e-01	ci right 8.585145e-01	k: 8516	n:10000
Cons ci ratio: 1.341604e-02	ci left: 8.890312e-01	ci right 9.011376e-01	k: 8952	n:10000
KS ci ratio: 4.108126e-02	ci left: 4.666691e-01	ci right 4.863446e-01	k: 4765	n:10000
CHD8   10000 perm   3 sec   (3112 perm/sec)   p_kst 4.765000e-01   p_cons 8.952000e-01   p_joint 8.516000e-01

Outputting figure to mutsig2_images.part000000000037/CHD8.6_7904_10000_0.4765_0.8952_0.8516.png
                gene_name: CHD8
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 32 percent done.
CHAF1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.964901e-02	ci left: 1.532571e-01	ci right 1.677413e-01	k: 1604	n:10000
Cons ci ratio: 3.441962e-02	ci left: 5.548147e-01	ci right 5.743477e-01	k: 5646	n:10000
KS ci ratio: 1.439852e-01	ci left: 6.401182e-02	ci right 7.404101e-02	k: 689	n:10000
CHAF1A   10000 perm   2 sec   (4814 perm/sec)   p_kst 6.890000e-02   p_cons 5.646000e-01   p_joint 1.604000e-01

Joint ci ratio: 7.423726e-02	ci left: 1.177895e-01	ci right 1.269206e-01	k: 2446	n:20000
Cons ci ratio: 2.375595e-02	ci left: 5.696164e-01	ci right 5.833614e-01	k: 11530	n:20000
KS ci ratio: 1.036835e-01	ci left: 6.323153e-02	ci right 7.019508e-02	k: 1333	n:20000
CHAF1A   20000 perm   5 sec   (4328 perm/sec)   p_kst 6.665000e-02   p_cons 5.765000e-01   p_joint 1.223000e-01

Joint ci ratio: 6.413525e-02	ci left: 1.071707e-01	ci right 1.143049e-01	k: 3321	n:30000
Cons ci ratio: 1.937453e-02	ci left: 5.714524e-01	ci right 5.826660e-01	k: 17312	n:30000
KS ci ratio: 8.306762e-02	ci left: 6.622250e-02	ci right 7.199462e-02	k: 2072	n:30000
CHAF1A   30000 perm   7 sec   (4117 perm/sec)   p_kst 6.906667e-02   p_cons 5.770667e-01   p_joint 1.107000e-01

Outputting figure to mutsig2_images.part000000000037/CHAF1A.5_2931_30000_0.069067_0.57707_0.1107.png
                gene_name: CHAF1A
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 34 percent done.
CHGB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.994172e-01	ci left: 3.348089e-02	ci right 4.099178e-02	k: 371	n:10000
Cons ci ratio: 3.662888e-02	ci left: 5.239639e-01	ci right 5.436164e-01	k: 5338	n:10000
KS ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
CHGB   10000 perm   2 sec   (4893 perm/sec)   p_kst 1.410000e-02   p_cons 5.338000e-01   p_joint 3.710000e-02

Joint ci ratio: 1.340536e-01	ci left: 3.824541e-02	ci right 4.378904e-02	k: 819	n:20000
Cons ci ratio: 2.516461e-02	ci left: 5.412211e-01	ci right 5.550649e-01	k: 10963	n:20000
KS ci ratio: 2.261475e-01	ci left: 1.312511e-02	ci right 1.651809e-02	k: 295	n:20000
CHGB   20000 perm   4 sec   (4495 perm/sec)   p_kst 1.475000e-02   p_cons 5.481500e-01   p_joint 4.095000e-02

Joint ci ratio: 1.280313e-01	ci left: 2.835696e-02	ci right 3.226803e-02	k: 908	n:30000
Cons ci ratio: 2.039770e-02	ci left: 5.461177e-01	ci right 5.574056e-01	k: 16553	n:30000
KS ci ratio: 1.863617e-01	ci left: 1.317781e-02	ci right 1.591739e-02	k: 435	n:30000
CHGB   30000 perm   7 sec   (4343 perm/sec)   p_kst 1.450000e-02   p_cons 5.517667e-01   p_joint 3.026667e-02

Joint ci ratio: 1.104565e-01	ci left: 2.883649e-02	ci right 3.223212e-02	k: 1220	n:40000
Cons ci ratio: 1.761844e-02	ci left: 5.481866e-01	ci right 5.579557e-01	k: 22123	n:40000
KS ci ratio: 1.604635e-01	ci left: 1.351942e-02	ci right 1.590179e-02	k: 587	n:40000
CHGB   40000 perm   9 sec   (4230 perm/sec)   p_kst 1.467500e-02   p_cons 5.530750e-01   p_joint 3.050000e-02

Joint ci ratio: 9.638724e-02	ci left: 3.047454e-02	ci right 3.358011e-02	k: 1600	n:50000
Cons ci ratio: 1.614525e-02	ci left: 5.366799e-01	ci right 5.454353e-01	k: 27053	n:50000
KS ci ratio: 1.451350e-01	ci left: 1.333547e-02	ci right 1.544146e-02	k: 718	n:50000
CHGB   50000 perm   12 sec   (4079 perm/sec)   p_kst 1.436000e-02   p_cons 5.410600e-01   p_joint 3.200000e-02

Joint ci ratio: 8.096382e-02	ci left: 3.607562e-02	ci right 3.913598e-02	k: 2255	n:60000
Cons ci ratio: 1.472554e-02	ci left: 5.375028e-01	ci right 5.454932e-01	k: 32490	n:60000
KS ci ratio: 1.325521e-01	ci left: 1.341360e-02	ci right 1.533379e-02	k: 861	n:60000
CHGB   60000 perm   15 sec   (3962 perm/sec)   p_kst 1.435000e-02   p_cons 5.415000e-01   p_joint 3.758333e-02

Joint ci ratio: 8.803692e-02	ci left: 2.632897e-02	ci right 2.876755e-02	k: 1927	n:70000
Cons ci ratio: 1.331010e-02	ci left: 5.496936e-01	ci right 5.570734e-01	k: 38737	n:70000
KS ci ratio: 1.223293e-01	ci left: 1.357206e-02	ci right 1.535424e-02	k: 1011	n:70000
CHGB   70000 perm   18 sec   (3879 perm/sec)   p_kst 1.444286e-02   p_cons 5.533857e-01   p_joint 2.752857e-02

Joint ci ratio: 8.048160e-02	ci left: 2.763969e-02	ci right 2.996965e-02	k: 2303	n:80000
Cons ci ratio: 1.245485e-02	ci left: 5.497593e-01	ci right 5.566619e-01	k: 44257	n:80000
KS ci ratio: 1.135145e-01	ci left: 1.385312e-02	ci right 1.553234e-02	k: 1174	n:80000
CHGB   80000 perm   21 sec   (3818 perm/sec)   p_kst 1.467500e-02   p_cons 5.532125e-01   p_joint 2.878750e-02

Joint ci ratio: 7.610588e-02	ci left: 2.754252e-02	ci right 2.973245e-02	k: 2576	n:90000
Cons ci ratio: 1.175316e-02	ci left: 5.495111e-01	ci right 5.560188e-01	k: 49749	n:90000
KS ci ratio: 1.065684e-01	ci left: 1.402122e-02	ci right 1.561028e-02	k: 1332	n:90000
CHGB   90000 perm   24 sec   (3748 perm/sec)   p_kst 1.480000e-02   p_cons 5.527667e-01   p_joint 2.862222e-02

Joint ci ratio: 7.359238e-02	ci left: 2.657371e-02	ci right 2.861382e-02	k: 2758	n:100000
Cons ci ratio: 1.114681e-02	ci left: 5.498219e-01	ci right 5.559950e-01	k: 55291	n:100000
KS ci ratio: 1.019453e-01	ci left: 1.382669e-02	ci right 1.532166e-02	k: 1456	n:100000
CHGB   100000 perm   27 sec   (3693 perm/sec)   p_kst 1.456000e-02   p_cons 5.529100e-01   p_joint 2.758000e-02

Joint ci ratio: 7.058609e-02	ci left: 2.630920e-02	ci right 2.824310e-02	k: 2999	n:110000
Cons ci ratio: 1.063064e-02	ci left: 5.498468e-01	ci right 5.557323e-01	k: 60807	n:110000
KS ci ratio: 9.743884e-02	ci left: 1.379298e-02	ci right 1.521460e-02	k: 1594	n:110000
CHGB   110000 perm   30 sec   (3629 perm/sec)   p_kst 1.449091e-02   p_cons 5.527909e-01   p_joint 2.726364e-02

Outputting figure to mutsig2_images.part000000000037/CHGB.5_2054_110000_0.014491_0.55279_0.027264.png
                gene_name: CHGB
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 36 percent done.
CHIA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.892855e-02	ci left: 4.935506e-01	ci right 5.132474e-01	k: 5034	n:10000
Cons ci ratio: 1.099754e-02	ci left: 9.218292e-01	ci right 9.321204e-01	k: 9271	n:10000
KS ci ratio: 5.938332e-02	ci left: 2.943978e-01	ci right 3.125168e-01	k: 3034	n:10000
CHIA   10000 perm   2 sec   (5107 perm/sec)   p_kst 3.034000e-01   p_cons 9.271000e-01   p_joint 5.034000e-01

Outputting figure to mutsig2_images.part000000000037/CHIA.5_1475_10000_0.3034_0.9271_0.5034.png
                gene_name: CHIA
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 38 percent done.
CHIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.131927e-02	ci left: 9.177038e-01	ci right 9.282482e-01	k: 9231	n:10000
KS ci ratio: 1.301967e-02	ci left: 8.946712e-01	ci right 9.064942e-01	k: 9007	n:10000
CHIT1   10000 perm   2 sec   (4912 perm/sec)   p_kst 9.007000e-01   p_cons 9.231000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHIT1.5_1445_10000_0.9007_0.9231_1.png
                gene_name: CHIT1
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
CHML
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.468635e-01	ci left: 6.159690e-02	ci right 7.145745e-02	k: 664	n:10000
Cons ci ratio: 4.434166e-02	ci left: 4.288434e-01	ci right 4.483924e-01	k: 4386	n:10000
KS ci ratio: 2.061291e-01	ci left: 3.129396e-02	ci right 3.858023e-02	k: 348	n:10000
CHML   10000 perm   2 sec   (4887 perm/sec)   p_kst 3.480000e-02   p_cons 4.386000e-01   p_joint 6.640000e-02

Joint ci ratio: 1.026161e-01	ci left: 6.450023e-02	ci right 7.152600e-02	k: 1359	n:20000
Cons ci ratio: 3.148469e-02	ci left: 4.297110e-01	ci right 4.435074e-01	k: 8732	n:20000
KS ci ratio: 1.508729e-01	ci left: 3.018195e-02	ci right 3.515513e-02	k: 652	n:20000
CHML   20000 perm   4 sec   (4551 perm/sec)   p_kst 3.260000e-02   p_cons 4.366000e-01   p_joint 6.795000e-02

Joint ci ratio: 8.976508e-02	ci left: 5.707763e-02	ci right 6.247468e-02	k: 1792	n:30000
Cons ci ratio: 2.454957e-02	ci left: 4.537482e-01	ci right 4.650596e-01	k: 13782	n:30000
KS ci ratio: 1.235472e-01	ci left: 3.045747e-02	ci right 3.450040e-02	k: 973	n:30000
CHML   30000 perm   7 sec   (4383 perm/sec)   p_kst 3.243333e-02   p_cons 4.594000e-01   p_joint 5.973333e-02

Joint ci ratio: 6.573212e-02	ci left: 7.895982e-02	ci right 8.435110e-02	k: 3265	n:40000
Cons ci ratio: 2.122450e-02	ci left: 4.553561e-01	ci right 4.651496e-01	k: 18410	n:40000
KS ci ratio: 1.060150e-01	ci left: 3.129522e-02	ci right 3.482299e-02	k: 1321	n:40000
CHML   40000 perm   10 sec   (4177 perm/sec)   p_kst 3.302500e-02   p_cons 4.602500e-01   p_joint 8.162500e-02

Joint ci ratio: 7.104034e-02	ci left: 5.535724e-02	ci right 5.945434e-02	k: 2869	n:50000
Cons ci ratio: 1.896140e-02	ci left: 4.564632e-01	ci right 4.652213e-01	k: 23042	n:50000
KS ci ratio: 9.900486e-02	ci left: 2.889293e-02	ci right 3.192191e-02	k: 1519	n:50000
CHML   50000 perm   12 sec   (4056 perm/sec)   p_kst 3.038000e-02   p_cons 4.608400e-01   p_joint 5.738000e-02

Outputting figure to mutsig2_images.part000000000037/CHML.5_1975_50000_0.03038_0.46084_0.05738.png
                gene_name: CHML
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.059 

Current progress: 42 percent done.
CHRD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.552514e-02	ci left: 1.661239e-01	ci right 1.810667e-01	k: 1735	n:10000
Cons ci ratio: 1.562101e-02	ci left: 8.561050e-01	ci right 8.696829e-01	k: 8630	n:10000
KS ci ratio: 1.399944e-01	ci left: 6.758933e-02	ci right 7.786125e-02	k: 726	n:10000
CHRD   10000 perm   2 sec   (4862 perm/sec)   p_kst 7.260000e-02   p_cons 8.630000e-01   p_joint 1.735000e-01

Joint ci ratio: 7.301841e-02	ci left: 1.213321e-01	ci right 1.305770e-01	k: 2518	n:20000
Cons ci ratio: 1.149381e-02	ci left: 8.483203e-01	ci right 8.581768e-01	k: 17066	n:20000
KS ci ratio: 9.954792e-02	ci left: 6.835732e-02	ci right 7.556772e-02	k: 1438	n:20000
CHRD   20000 perm   5 sec   (4307 perm/sec)   p_kst 7.190000e-02   p_cons 8.533000e-01   p_joint 1.259000e-01

Outputting figure to mutsig2_images.part000000000037/CHRD.5_2960_20000_0.0719_0.8533_0.1259.png
                gene_name: CHRD
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 43 percent done.
CHRNA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.456575e-02	ci left: 7.090681e-01	ci right 7.268048e-01	k: 7180	n:10000
Cons ci ratio: 1.174385e-02	ci left: 9.121411e-01	ci right 9.230142e-01	k: 9177	n:10000
KS ci ratio: 4.292950e-02	ci left: 4.448051e-01	ci right 4.644214e-01	k: 4546	n:10000
CHRNA2   10000 perm   2 sec   (5246 perm/sec)   p_kst 4.546000e-01   p_cons 9.177000e-01   p_joint 7.180000e-01

Outputting figure to mutsig2_images.part000000000037/CHRNA2.5_1614_10000_0.4546_0.9177_0.718.png
                gene_name: CHRNA2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 45 percent done.
CHFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.931451e-02	ci left: 6.318096e-01	ci right 6.507081e-01	k: 6413	n:10000
KS ci ratio: 1.556154e-02	ci left: 8.570234e-01	ci right 8.705639e-01	k: 8639	n:10000
CHFR   10000 perm   2 sec   (5320 perm/sec)   p_kst 8.639000e-01   p_cons 6.413000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHFR.4_2160_10000_0.8639_0.6413_1.png
                gene_name: CHFR
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
CHI3L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.437178e-02	ci left: 7.122978e-01	ci right 7.299732e-01	k: 7212	n:10000
Cons ci ratio: 3.366971e-02	ci left: 5.656415e-01	ci right 5.851146e-01	k: 5754	n:10000
KS ci ratio: 4.014615e-02	ci left: 4.781577e-01	ci right 4.978493e-01	k: 4880	n:10000
CHI3L2   10000 perm   2 sec   (6156 perm/sec)   p_kst 4.880000e-01   p_cons 5.754000e-01   p_joint 7.212000e-01

Outputting figure to mutsig2_images.part000000000037/CHI3L2.4_1213_10000_0.488_0.5754_0.7212.png
                gene_name: CHI3L2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 49 percent done.
CHKA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.090877e-02	ci left: 4.687666e-01	ci right 4.884459e-01	k: 4786	n:10000
Cons ci ratio: 1.792416e-02	ci left: 8.195432e-01	ci right 8.344658e-01	k: 8271	n:10000
KS ci ratio: 6.455374e-02	ci left: 2.606239e-01	ci right 2.781107e-01	k: 2693	n:10000
CHKA   10000 perm   2 sec   (5456 perm/sec)   p_kst 2.693000e-01   p_cons 8.271000e-01   p_joint 4.786000e-01

Outputting figure to mutsig2_images.part000000000037/CHKA.4_1422_10000_0.2693_0.8271_0.4786.png
                gene_name: CHKA
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 51 percent done.
CHRDL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.072269e-03	ci left: 9.553457e-01	ci right 9.631839e-01	k: 9594	n:10000
KS ci ratio: 2.687064e-02	ci left: 6.710580e-01	ci right 6.894369e-01	k: 6803	n:10000
CHRDL2   10000 perm   2 sec   (5374 perm/sec)   p_kst 6.803000e-01   p_cons 9.594000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHRDL2.4_1404_10000_0.6803_0.9594_1.png
                gene_name: CHRDL2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
CHRM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.727913e-02	ci left: 6.644110e-01	ci right 6.828878e-01	k: 6737	n:10000
KS ci ratio: 1.057738e-02	ci left: 9.270955e-01	ci right 9.370510e-01	k: 9322	n:10000
CHRM3   10000 perm   2 sec   (4977 perm/sec)   p_kst 9.322000e-01   p_cons 6.737000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHRM3.4_1777_10000_0.9322_0.6737_1.png
                gene_name: CHRM3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
CHRNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.130118e-02	ci left: 6.009618e-01	ci right 6.201737e-01	k: 6106	n:10000
KS ci ratio: 1.575937e-02	ci left: 8.539624e-01	ci right 8.676267e-01	k: 8609	n:10000
CHRNA1   10000 perm   2 sec   (5495 perm/sec)   p_kst 8.609000e-01   p_cons 6.106000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHRNA1.4_1489_10000_0.8609_0.6106_1.png
                gene_name: CHRNA1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
CFP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.650411e-02	ci left: 4.056177e-01	ci right 4.250317e-01	k: 4153	n:10000
Cons ci ratio: 1.382589e-01	ci left: 6.923436e-02	ci right 7.961519e-02	k: 743	n:10000
KS ci ratio: 2.854166e-02	ci left: 6.440798e-01	ci right 6.628308e-01	k: 6535	n:10000
CFP   10000 perm   2 sec   (5663 perm/sec)   p_kst 6.535000e-01   p_cons 7.430000e-02   p_joint 4.153000e-01

Joint ci ratio: 5.858627e-02	ci left: 1.775143e-01	ci right 1.882781e-01	k: 3657	n:20000
Cons ci ratio: 9.888312e-02	ci left: 6.923660e-02	ci right 7.648817e-02	k: 1456	n:20000
KS ci ratio: 2.043521e-02	ci left: 6.411842e-01	ci right 6.544728e-01	k: 12957	n:20000
CFP   20000 perm   4 sec   (4934 perm/sec)   p_kst 6.478500e-01   p_cons 7.280000e-02   p_joint 1.828500e-01

Outputting figure to mutsig2_images.part000000000037/CFP.3_1446_20000_0.64785_0.0728_0.18285.png
                gene_name: CFP
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 58 percent done.
CHCHD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.625527e-02	ci left: 5.290697e-01	ci right 5.487076e-01	k: 5389	n:10000
KS ci ratio: 1.475807e-02	ci left: 8.692784e-01	ci right 8.823018e-01	k: 8759	n:10000
CHCHD5   10000 perm   1 sec   (6792 perm/sec)   p_kst 8.759000e-01   p_cons 5.389000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHCHD5.3_349_10000_0.8759_0.5389_1.png
                gene_name: CHCHD5
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
CHERP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.455437e-02	ci left: 1.693677e-01	ci right 1.844210e-01	k: 1768	n:10000
Cons ci ratio: 3.969896e-02	ci left: 4.837540e-01	ci right 5.034497e-01	k: 4936	n:10000
KS ci ratio: 1.110452e-01	ci left: 1.046144e-01	ci right 1.170133e-01	k: 1107	n:10000
CHERP   10000 perm   2 sec   (5013 perm/sec)   p_kst 1.107000e-01   p_cons 4.936000e-01   p_joint 1.768000e-01

Joint ci ratio: 5.842020e-02	ci left: 1.783545e-01	ci right 1.891376e-01	k: 3674	n:20000
Cons ci ratio: 2.763902e-02	ci left: 4.944457e-01	ci right 5.083539e-01	k: 10028	n:20000
KS ci ratio: 7.914620e-02	ci left: 1.049095e-01	ci right 1.136044e-01	k: 2184	n:20000
CHERP   20000 perm   5 sec   (4386 perm/sec)   p_kst 1.092000e-01   p_cons 5.014000e-01   p_joint 1.837000e-01

Outputting figure to mutsig2_images.part000000000037/CHERP.3_2819_20000_0.1092_0.5014_0.1837.png
                gene_name: CHERP
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 62 percent done.
CHI3L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.720168e-02	ci left: 1.607198e-01	ci right 1.754741e-01	k: 1680	n:10000
Cons ci ratio: 5.885386e-02	ci left: 2.981652e-01	ci right 3.163472e-01	k: 3072	n:10000
KS ci ratio: 9.103792e-02	ci left: 1.492334e-01	ci right 1.635673e-01	k: 1563	n:10000
CHI3L1   10000 perm   2 sec   (5935 perm/sec)   p_kst 1.563000e-01   p_cons 3.072000e-01   p_joint 1.680000e-01

Outputting figure to mutsig2_images.part000000000037/CHI3L1.3_1192_10000_0.1563_0.3072_0.168.png
                gene_name: CHI3L1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 64 percent done.
CHMP2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.341548e-02	ci left: 5.693517e-01	ci right 5.888022e-01	k: 5791	n:10000
Cons ci ratio: 4.609487e-02	ci left: 4.099023e-01	ci right 4.293446e-01	k: 4196	n:10000
KS ci ratio: 2.283688e-02	ci left: 7.379539e-01	ci right 7.551022e-01	k: 7466	n:10000
CHMP2A   10000 perm   2 sec   (6201 perm/sec)   p_kst 7.466000e-01   p_cons 4.196000e-01   p_joint 5.791000e-01

Outputting figure to mutsig2_images.part000000000037/CHMP2A.3_689_10000_0.7466_0.4196_0.5791.png
                gene_name: CHMP2A
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 66 percent done.
CHODL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.636482e-02	ci left: 5.275679e-01	ci right 5.472103e-01	k: 5374	n:10000
KS ci ratio: 3.369038e-02	ci left: 5.653406e-01	ci right 5.848156e-01	k: 5751	n:10000
CHODL   10000 perm   2 sec   (6215 perm/sec)   p_kst 5.751000e-01   p_cons 5.374000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHODL.3_846_10000_0.5751_0.5374_1.png
                gene_name: CHODL
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
CHPF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.347678e-01	ci left: 7.272051e-02	ci right 8.332686e-02	k: 779	n:10000
Cons ci ratio: 4.868830e-03	ci left: 9.823135e-01	ci right 9.871982e-01	k: 9849	n:10000
KS ci ratio: 2.682907e-01	ci left: 1.809309e-02	ci right 2.379077e-02	k: 208	n:10000
CHPF   10000 perm   2 sec   (5572 perm/sec)   p_kst 2.080000e-02   p_cons 9.849000e-01   p_joint 7.790000e-02

Joint ci ratio: 7.633143e-02	ci left: 1.120355e-01	ci right 1.209763e-01	k: 2329	n:20000
Cons ci ratio: 3.236071e-03	ci left: 9.849088e-01	ci right 9.881475e-01	k: 19732	n:20000
KS ci ratio: 1.867697e-01	ci left: 1.953462e-02	ci right 2.360613e-02	k: 430	n:20000
CHPF   20000 perm   4 sec   (4849 perm/sec)   p_kst 2.150000e-02   p_cons 9.866000e-01   p_joint 1.164500e-01

Joint ci ratio: 7.715077e-02	ci left: 7.616833e-02	ci right 8.231345e-02	k: 2376	n:30000
Cons ci ratio: 2.653944e-03	ci left: 9.850944e-01	ci right 9.877435e-01	k: 29594	n:30000
KS ci ratio: 1.540268e-01	ci left: 1.950355e-02	ci right 2.279010e-02	k: 633	n:30000
CHPF   30000 perm   7 sec   (4544 perm/sec)   p_kst 2.110000e-02   p_cons 9.864667e-01   p_joint 7.920000e-02

Joint ci ratio: 7.493914e-02	ci left: 6.162068e-02	ci right 6.644285e-02	k: 2560	n:40000
Cons ci ratio: 2.288392e-03	ci left: 9.853987e-01	ci right 9.876799e-01	k: 39463	n:40000
KS ci ratio: 1.332575e-01	ci left: 1.976230e-02	ci right 2.260780e-02	k: 846	n:40000
CHPF   40000 perm   9 sec   (4354 perm/sec)   p_kst 2.115000e-02   p_cons 9.865750e-01   p_joint 6.400000e-02

Joint ci ratio: 7.125128e-02	ci left: 5.504260e-02	ci right 5.912901e-02	k: 2853	n:50000
Cons ci ratio: 2.062962e-03	ci left: 9.853046e-01	ci right 9.873584e-01	k: 49318	n:50000
KS ci ratio: 1.178739e-01	ci left: 2.036302e-02	ci right 2.293293e-02	k: 1081	n:50000
CHPF   50000 perm   12 sec   (4210 perm/sec)   p_kst 2.162000e-02   p_cons 9.863600e-01   p_joint 5.706000e-02

Joint ci ratio: 5.940261e-02	ci left: 6.565308e-02	ci right 6.968886e-02	k: 4059	n:60000
Cons ci ratio: 1.886027e-03	ci left: 9.853549e-01	ci right 9.872310e-01	k: 59179	n:60000
KS ci ratio: 1.076632e-01	ci left: 2.045164e-02	ci right 2.279495e-02	k: 1296	n:60000
CHPF   60000 perm   15 sec   (4092 perm/sec)   p_kst 2.160000e-02   p_cons 9.863167e-01   p_joint 6.765000e-02

Joint ci ratio: 5.271403e-02	ci left: 7.128106e-02	ci right 7.515440e-02	k: 5124	n:70000
Cons ci ratio: 1.751663e-03	ci left: 9.853376e-01	ci right 9.870788e-01	k: 69036	n:70000
KS ci ratio: 1.001230e-01	ci left: 2.035463e-02	ci right 2.251386e-02	k: 1499	n:70000
CHPF   70000 perm   18 sec   (3967 perm/sec)   p_kst 2.141429e-02   p_cons 9.862286e-01   p_joint 7.320000e-02

Joint ci ratio: 5.063303e-02	ci left: 6.793249e-02	ci right 7.147380e-02	k: 5575	n:80000
Cons ci ratio: 1.649907e-03	ci left: 9.852003e-01	ci right 9.868392e-01	k: 78883	n:80000
KS ci ratio: 9.428473e-02	ci left: 2.015188e-02	ci right 2.215805e-02	k: 1691	n:80000
CHPF   80000 perm   21 sec   (3882 perm/sec)   p_kst 2.113750e-02   p_cons 9.860375e-01   p_joint 6.968750e-02

Outputting figure to mutsig2_images.part000000000037/CHPF.3_2344_80000_0.021138_0.98604_0.069687.png
                gene_name: CHPF
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.071 

Current progress: 70 percent done.
CHPF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.204644e-02	ci left: 7.512008e-01	ci right 7.680477e-01	k: 7597	n:10000
KS ci ratio: 2.361561e-02	ci left: 7.249193e-01	ci right 7.423444e-01	k: 7337	n:10000
CHPF2   10000 perm   2 sec   (5307 perm/sec)   p_kst 7.337000e-01   p_cons 7.597000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHPF2.3_2335_10000_0.7337_0.7597_1.png
                gene_name: CHPF2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
CHRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.406905e-02	ci left: 7.173453e-01	ci right 7.349227e-01	k: 7262	n:10000
KS ci ratio: 9.381559e-03	ci left: 9.412847e-01	ci right 9.502533e-01	k: 9459	n:10000
CHRM1   10000 perm   2 sec   (5837 perm/sec)   p_kst 9.459000e-01   p_cons 7.262000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHRM1.3_1387_10000_0.9459_0.7262_1.png
                gene_name: CHRM1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
CGA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.822100e-02	ci left: 6.492111e-01	ci right 6.678964e-01	k: 6586	n:10000
Cons ci ratio: 7.327604e-02	ci left: 2.142811e-01	ci right 2.306809e-01	k: 2224	n:10000
KS ci ratio: 2.663449e-01	ci left: 1.837333e-02	ci right 2.411031e-02	k: 211	n:10000
CGA   10000 perm   2 sec   (6636 perm/sec)   p_kst 2.110000e-02   p_cons 2.224000e-01   p_joint 6.586000e-01

Joint ci ratio: 7.451510e-02	ci left: 1.170024e-01	ci right 1.261079e-01	k: 2430	n:20000
Cons ci ratio: 5.130325e-02	ci left: 2.201197e-01	ci right 2.317601e-01	k: 4518	n:20000
KS ci ratio: 1.932871e-01	ci left: 1.819999e-02	ci right 2.214125e-02	k: 402	n:20000
CGA   20000 perm   4 sec   (5683 perm/sec)   p_kst 2.010000e-02   p_cons 2.259000e-01   p_joint 1.215000e-01

Joint ci ratio: 2.970188e-02	ci left: 3.618414e-01	ci right 3.727843e-01	k: 11019	n:30000
Cons ci ratio: 4.200718e-02	ci left: 2.202187e-01	ci right 2.297013e-01	k: 6748	n:30000
KS ci ratio: 1.586925e-01	ci left: 1.834962e-02	ci right 2.154430e-02	k: 597	n:30000
CGA   30000 perm   6 sec   (5320 perm/sec)   p_kst 1.990000e-02   p_cons 2.249333e-01   p_joint 3.673000e-01

Joint ci ratio: 2.573825e-02	ci left: 3.622988e-01	ci right 3.717705e-01	k: 14681	n:40000
Cons ci ratio: 3.644118e-02	ci left: 2.202696e-01	ci right 2.284705e-01	k: 8974	n:40000
KS ci ratio: 1.370237e-01	ci left: 1.867461e-02	ci right 2.144568e-02	k: 801	n:40000
CGA   40000 perm   8 sec   (5106 perm/sec)   p_kst 2.002500e-02   p_cons 2.243500e-01   p_joint 3.670250e-01

Joint ci ratio: 2.613604e-02	ci left: 3.062262e-01	ci right 3.143558e-01	k: 15514	n:50000
Cons ci ratio: 3.248717e-02	ci left: 2.218429e-01	ci right 2.291890e-01	k: 11275	n:50000
KS ci ratio: 1.235361e-01	ci left: 1.851926e-02	ci right 2.097695e-02	k: 986	n:50000
CGA   50000 perm   10 sec   (4946 perm/sec)   p_kst 1.972000e-02   p_cons 2.255000e-01   p_joint 3.102800e-01

Joint ci ratio: 2.913056e-02	ci left: 2.284448e-01	ci right 2.352145e-01	k: 13909	n:60000
Cons ci ratio: 2.954836e-02	ci left: 2.234376e-01	ci right 2.301555e-01	k: 13607	n:60000
KS ci ratio: 1.134785e-01	ci left: 1.839235e-02	ci right 2.062114e-02	k: 1169	n:60000
CGA   60000 perm   12 sec   (4809 perm/sec)   p_kst 1.948333e-02   p_cons 2.267833e-01   p_joint 2.318167e-01

Joint ci ratio: 1.941059e-02	ci left: 3.645541e-01	ci right 3.717140e-01	k: 25769	n:70000
Cons ci ratio: 2.733755e-02	ci left: 2.239295e-01	ci right 2.301503e-01	k: 15892	n:70000
KS ci ratio: 1.049041e-01	ci left: 1.853023e-02	ci right 2.059558e-02	k: 1368	n:70000
CGA   70000 perm   15 sec   (4675 perm/sec)   p_kst 1.954286e-02   p_cons 2.270286e-01   p_joint 3.681286e-01

Joint ci ratio: 1.818451e-02	ci left: 3.640829e-01	ci right 3.707768e-01	k: 29394	n:80000
Cons ci ratio: 2.557871e-02	ci left: 2.240387e-01	ci right 2.298561e-01	k: 18155	n:80000
KS ci ratio: 9.789213e-02	ci left: 1.868722e-02	ci right 2.062284e-02	k: 1571	n:80000
CGA   80000 perm   18 sec   (4557 perm/sec)   p_kst 1.963750e-02   p_cons 2.269375e-01   p_joint 3.674250e-01

Outputting figure to mutsig2_images.part000000000037/CGA.2_363_80000_0.019637_0.22694_0.36743.png
                gene_name: CGA
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 75 percent done.
CGGBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.350447e-02	ci left: 2.670569e-01	ci right 2.846738e-01	k: 2758	n:10000
Cons ci ratio: 7.786312e-02	ci left: 1.942671e-01	ci right 2.101068e-01	k: 2021	n:10000
KS ci ratio: 1.128281e-01	ci left: 1.015915e-01	ci right 1.138381e-01	k: 1076	n:10000
CGGBP1   10000 perm   2 sec   (6224 perm/sec)   p_kst 1.076000e-01   p_cons 2.021000e-01   p_joint 2.758000e-01

Joint ci ratio: 4.087049e-02	ci left: 3.085645e-01	ci right 3.214893e-01	k: 6300	n:20000
Cons ci ratio: 5.419442e-02	ci left: 2.016998e-01	ci right 2.129854e-01	k: 4146	n:20000
KS ci ratio: 7.978301e-02	ci left: 1.033868e-01	ci right 1.120276e-01	k: 2153	n:20000
CGGBP1   20000 perm   4 sec   (5513 perm/sec)   p_kst 1.076500e-01   p_cons 2.073000e-01   p_joint 3.150000e-01

Outputting figure to mutsig2_images.part000000000037/CGGBP1.2_508_20000_0.10765_0.2073_0.315.png
                gene_name: CGGBP1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 77 percent done.
CH25H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.315665e-02	ci left: 2.692348e-01	ci right 2.868947e-01	k: 2780	n:10000
Cons ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
KS ci ratio: 2.880677e-02	ci left: 6.398548e-01	ci right 6.586581e-01	k: 6493	n:10000
CH25H   10000 perm   2 sec   (6503 perm/sec)   p_kst 6.493000e-01   p_cons 1.336000e-01   p_joint 2.780000e-01

Outputting figure to mutsig2_images.part000000000037/CH25H.2_823_10000_0.6493_0.1336_0.278.png
                gene_name: CH25H
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 79 percent done.
CHAC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.062743e-02	ci left: 9.264756e-01	ci right 9.364713e-01	k: 9316	n:10000
KS ci ratio: 1.866511e-02	ci left: 8.074513e-01	ci right 8.227647e-01	k: 8152	n:10000
CHAC2   10000 perm   1 sec   (6926 perm/sec)   p_kst 8.152000e-01   p_cons 9.316000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHAC2.2_567_10000_0.8152_0.9316_1.png
                gene_name: CHAC2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
CHAF1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.662153e-02	ci left: 5.240640e-01	ci right 5.437162e-01	k: 5339	n:10000
KS ci ratio: 2.588722e-02	ci left: 6.871808e-01	ci right 7.053048e-01	k: 6963	n:10000
CHAF1B   10000 perm   2 sec   (5953 perm/sec)   p_kst 6.963000e-01   p_cons 5.339000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000037/CHAF1B.2_1732_10000_0.6963_0.5339_1.png
                gene_name: CHAF1B
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
CHCHD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.357936e-02	ci left: 7.255253e-01	ci right 7.429380e-01	k: 7343	n:10000
Cons ci ratio: 5.844174e-02	ci left: 3.011400e-01	ci right 3.193706e-01	k: 3102	n:10000
KS ci ratio: 4.011404e-02	ci left: 4.785574e-01	ci right 4.982494e-01	k: 4884	n:10000
CHCHD6   10000 perm   2 sec   (6652 perm/sec)   p_kst 4.884000e-01   p_cons 3.102000e-01   p_joint 7.343000e-01

Outputting figure to mutsig2_images.part000000000037/CHCHD6.2_740_10000_0.4884_0.3102_0.7343.png
                gene_name: CHCHD6
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 85 percent done.
CHD1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.503433e-03	ci left: 9.699492e-01	ci right 9.763711e-01	k: 9733	n:10000
Cons ci ratio: 4.865692e-02	ci left: 3.839072e-01	ci right 4.031548e-01	k: 3935	n:10000
KS ci ratio: 6.868370e-03	ci left: 9.667828e-01	ci right 9.735397e-01	k: 9703	n:10000
CHD1L   10000 perm   2 sec   (5095 perm/sec)   p_kst 9.703000e-01   p_cons 3.935000e-01   p_joint 9.733000e-01

Outputting figure to mutsig2_images.part000000000037/CHD1L.2_2786_10000_0.9703_0.3935_0.9733.png
                gene_name: CHD1L
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 87 percent done.
CHDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.181211e-01	ci left: 9.331107e-02	ci right 1.051236e-01	k: 991	n:10000
Cons ci ratio: 1.788029e-02	ci left: 8.202549e-01	ci right 8.351537e-01	k: 8278	n:10000
KS ci ratio: 1.550139e-01	ci left: 5.542402e-02	ci right 6.483425e-02	k: 600	n:10000
CHDH   10000 perm   2 sec   (5902 perm/sec)   p_kst 6.000000e-02   p_cons 8.278000e-01   p_joint 9.910000e-02

Joint ci ratio: 8.612820e-02	ci left: 8.979365e-02	ci right 9.792487e-02	k: 1876	n:20000
Cons ci ratio: 1.304652e-02	ci left: 8.132388e-01	ci right 8.239684e-01	k: 16373	n:20000
KS ci ratio: 1.105960e-01	ci left: 5.582245e-02	ci right 6.240645e-02	k: 1181	n:20000
CHDH   20000 perm   4 sec   (5133 perm/sec)   p_kst 5.905000e-02   p_cons 8.186500e-01   p_joint 9.380000e-02

Joint ci ratio: 6.153039e-02	ci left: 1.154880e-01	ci right 1.228526e-01	k: 3574	n:30000
Cons ci ratio: 1.071027e-02	ci left: 8.126109e-01	ci right 8.213943e-01	k: 24511	n:30000
KS ci ratio: 8.987175e-02	ci left: 5.694711e-02	ci right 6.233856e-02	k: 1788	n:30000
CHDH   30000 perm   6 sec   (4812 perm/sec)   p_kst 5.960000e-02   p_cons 8.170333e-01   p_joint 1.191333e-01

Outputting figure to mutsig2_images.part000000000037/CHDH.2_1813_30000_0.0596_0.81703_0.11913.png
                gene_name: CHDH
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 89 percent done.
CHMP2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.116972e-02	ci left: 6.029702e-01	ci right 6.221641e-01	k: 6126	n:10000
Cons ci ratio: 2.347668e-02	ci left: 7.272426e-01	ci right 7.446198e-01	k: 7360	n:10000
KS ci ratio: 3.609511e-02	ci left: 5.312726e-01	ci right 5.509035e-01	k: 5411	n:10000
CHMP2B   10000 perm   2 sec   (6221 perm/sec)   p_kst 5.411000e-01   p_cons 7.360000e-01   p_joint 6.126000e-01

Outputting figure to mutsig2_images.part000000000037/CHMP2B.2_666_10000_0.5411_0.736_0.6126.png
                gene_name: CHMP2B
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 91 percent done.
CHMP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.734750e-03	ci left: 9.890590e-01	ci right 9.928466e-01	k: 9911	n:10000
Cons ci ratio: 1.842942e-02	ci left: 8.113112e-01	ci right 8.265025e-01	k: 8190	n:10000
KS ci ratio: 1.271941e-02	ci left: 8.988792e-01	ci right 9.104838e-01	k: 9048	n:10000
CHMP5   10000 perm   2 sec   (6245 perm/sec)   p_kst 9.048000e-01   p_cons 8.190000e-01   p_joint 9.911000e-01

Outputting figure to mutsig2_images.part000000000037/CHMP5.2_692_10000_0.9048_0.819_0.9911.png
                gene_name: CHMP5
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 92 percent done.
CHN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.367660e-02	ci left: 5.655412e-01	ci right 5.850149e-01	k: 5753	n:10000
Cons ci ratio: 4.521658e-02	ci left: 4.192713e-01	ci right 4.387700e-01	k: 4290	n:10000
KS ci ratio: 4.152849e-02	ci left: 4.612762e-01	ci right 4.809407e-01	k: 4711	n:10000
CHN1   10000 perm   2 sec   (6239 perm/sec)   p_kst 4.711000e-01   p_cons 4.290000e-01   p_joint 5.753000e-01

Outputting figure to mutsig2_images.part000000000037/CHN1.2_1432_10000_0.4711_0.429_0.5753.png
                gene_name: CHN1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 94 percent done.
CHN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.858751e-02	ci left: 4.979503e-01	ci right 5.176452e-01	k: 5078	n:10000
Cons ci ratio: 2.020515e-02	ci left: 7.819844e-01	ci right 7.980463e-01	k: 7901	n:10000
KS ci ratio: 1.519441e-01	ci left: 5.764078e-02	ci right 6.721608e-02	k: 623	n:10000
CHN2   10000 perm   2 sec   (5838 perm/sec)   p_kst 6.230000e-02   p_cons 7.901000e-01   p_joint 5.078000e-01

Joint ci ratio: 1.079048e-01	ci left: 5.855047e-02	ci right 6.527759e-02	k: 1237	n:20000
Cons ci ratio: 1.434944e-02	ci left: 7.829251e-01	ci right 7.942909e-01	k: 15773	n:20000
KS ci ratio: 1.079048e-01	ci left: 5.855047e-02	ci right 6.527759e-02	k: 1237	n:20000
CHN2   20000 perm   4 sec   (5050 perm/sec)   p_kst 6.185000e-02   p_cons 7.886500e-01   p_joint 6.185000e-02

Joint ci ratio: 2.222134e-02	ci left: 5.034590e-01	ci right 5.148059e-01	k: 15274	n:30000
Cons ci ratio: 1.172150e-02	ci left: 7.838344e-01	ci right 7.931096e-01	k: 23655	n:30000
KS ci ratio: 8.876887e-02	ci left: 5.831772e-02	ci right 6.376768e-02	k: 1830	n:30000
CHN2   30000 perm   6 sec   (4783 perm/sec)   p_kst 6.100000e-02   p_cons 7.885000e-01   p_joint 5.091333e-01

Outputting figure to mutsig2_images.part000000000037/CHN2.2_1627_30000_0.061_0.7885_0.50913.png
                gene_name: CHN2
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 96 percent done.
CHORDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.491369e-02	ci left: 8.669281e-01	ci right 8.800535e-01	k: 8736	n:10000
Cons ci ratio: 7.496836e-02	ci left: 2.065875e-01	ci right 2.227791e-01	k: 2146	n:10000
KS ci ratio: 4.475820e-02	ci left: 4.242563e-01	ci right 4.437821e-01	k: 4340	n:10000
CHORDC1   10000 perm   2 sec   (6172 perm/sec)   p_kst 4.340000e-01   p_cons 2.146000e-01   p_joint 8.736000e-01

Outputting figure to mutsig2_images.part000000000037/CHORDC1.2_1043_10000_0.434_0.2146_0.8736.png
                gene_name: CHORDC1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 98 percent done.
CHRM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.018666e-02	ci left: 6.181391e-01	ci right 6.371865e-01	k: 6277	n:10000
Cons ci ratio: 5.703829e-02	ci left: 3.115552e-01	ci right 3.299493e-01	k: 3207	n:10000
KS ci ratio: 3.005765e-02	ci left: 6.201489e-01	ci right 6.391755e-01	k: 6297	n:10000
CHRM5   10000 perm   2 sec   (5793 perm/sec)   p_kst 6.297000e-01   p_cons 3.207000e-01   p_joint 6.277000e-01

Outputting figure to mutsig2_images.part000000000037/CHRM5.2_1603_10000_0.6297_0.3207_0.6277.png
                gene_name: CHRM5
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000037
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 37 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1713>
Subject: Job 9893886: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1713>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000038> was used as the working directory.
Started at Sat Oct  6 00:02:45 2012
Results reported at Sat Oct  6 00:12:24 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000038.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000038.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 38  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000038.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    593.24 sec.
    Max Memory :      3613 MB
    Max Swap   :      5940 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
38
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 38
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 38: processing genes 3337 - 3426
Calculating significance of each gene.
Using projection method.
3337	CHRNA3	8.858642e-01
3338	CHRNA4	8.925898e-01
3339	CHRNA5	4.838902e-01
3340	CHRNA6	6.756403e-01
3341	CHRNA7	8.623099e-01
3342	CHRNA9	8.064247e-01
3343	CHRNB1	7.290263e-01
3344	CHRNB2	2.401414e-01
3345	CHRNB3	3.862682e-01
3346	CHRNB4	1
3347	CHRND	4.174404e-01
3348	CHRNE	4.155865e-01
3349	CHRNG	4.145410e-01
3350	CHST1	4.665470e-01
3351	CHST10	2.679815e-03
3352	CHST11	5.776988e-01
3353	CHST12	5.058028e-01
3354	CHST13	6.004062e-01
3355	CHST14	7.931405e-01
3356	CHST15	1.921933e-01
3357	CHST2	7.630670e-01
3358	CHST3	1
3359	CHST4	6.275208e-04
3360	CHST5	5.220485e-01
3361	CHST6	1
3362	CHST7	1
3363	CHST8	4.686344e-01
3364	CHST9	6.229889e-04
3365	CHSY1	2.793088e-01
3366	CHSY3	1.975699e-01
3367	CHTF18	1
3368	CHTF8	1
3369	CHUK	3.568301e-01
3370	CHURC1	1
3371	CIAO1	1
3372	CIAPIN1	1
3373	CIB1	1
3374	CIB2	1.755163e-01
3375	CIB3	2.582415e-02
3376	CIB4	3.138556e-01
In gene CIC the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 4649    n = 1	mu =   2.96e-07
3377	CIC	8.513549e-01
3378	CIDEA	1
3379	CIDEB	1
3380	CIDEC	1
3381	CIITA	6.044644e-01
3382	CILP	5.547795e-01
3383	CILP2	9.907875e-01
3384	CINP	6.815065e-01
3385	CIR1	1.404978e-01
3386	CIRBP	4.805551e-01
3387	CIRH1A	3.604047e-01
3388	CISD1	1
3389	CISD2	1
3390	CISH	1
3391	CIT	5.102065e-01
3392	CITED1	1
3393	CITED2	8.312239e-01
3394	CIZ1	4.079531e-02
3395	CKAP2	8.776829e-01
3396	CKAP2L	6.626842e-01
3397	CKAP4	2.423065e-01
3398	CKAP5	9.626818e-01
3399	CKB	1
3400	CKLF	1
3401	CKM	1.620405e-01
3402	CKMT1A	1
3403	CKMT1B	4.054971e-01
3404	CKMT2	5.082427e-01
3405	CKS1B	2.901927e-01
3406	CKS2	2.100575e-01
3407	CLASP1	8.860129e-01
3408	CLASP2	9.665470e-01
3409	CLC	7.598775e-02
3410	CLCA1	3.871662e-01
3411	CLCA2	1.462371e-01
3412	CLCA4	2.382887e-01
3413	CLCC1	1.039997e-01
3414	CLCF1	1
3415	CLCN1	6.431063e-01
3416	CLCN2	3.503857e-01
3417	CLCN3	3.302176e-01
3418	CLCN4	1.999471e-01
In gene CLCN5 the following bins exceed PROBCAP:
    COAD-AA-3529	categ 6	N = 2503    n = 1	mu =   2.41e-07
3419	CLCN5	1.819795e-01
3420	CLCN6	7.689961e-01
3421	CLCN7	9.551169e-01
3422	CLCNKA	9.506184e-01
3423	CLCNKB	9.172572e-01
3424	CLDN1	1
3425	CLDN10	9.051121e-02
3426	CLDN11	4.348171e-01
Done

Running MutSig 2:
Scatter job 38: processing genes 3337 - 3426
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CIT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.483822e-01	ci left: 2.127733e-02	ci right 2.740406e-02	k: 242	n:10000
Cons ci ratio: 3.031594e-02	ci left: 6.161294e-01	ci right 6.351973e-01	k: 6257	n:10000
KS ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
CIT   10000 perm   3 sec   (3386 perm/sec)   p_kst 1.190000e-02   p_cons 6.257000e-01   p_joint 2.420000e-02

Joint ci ratio: 1.498089e-01	ci left: 3.061553e-02	ci right 3.562141e-02	k: 661	n:20000
Cons ci ratio: 2.155679e-02	ci left: 6.163413e-01	ci right 6.298229e-01	k: 12462	n:20000
KS ci ratio: 2.488949e-01	ci left: 1.072482e-02	ci right 1.381940e-02	k: 244	n:20000
CIT   20000 perm   9 sec   (2275 perm/sec)   p_kst 1.220000e-02   p_cons 6.231000e-01   p_joint 3.305000e-02

Joint ci ratio: 1.335894e-01	ci left: 2.603335e-02	ci right 2.979216e-02	k: 836	n:30000
Cons ci ratio: 1.759009e-02	ci left: 6.178887e-01	ci right 6.288874e-01	k: 18702	n:30000
KS ci ratio: 2.074060e-01	ci left: 1.054560e-02	ci right 1.301697e-02	k: 352	n:30000
CIT   30000 perm   12 sec   (2448 perm/sec)   p_kst 1.173333e-02   p_cons 6.234000e-01   p_joint 2.786667e-02

Joint ci ratio: 1.107375e-01	ci left: 2.869052e-02	ci right 3.207811e-02	k: 1214	n:40000
Cons ci ratio: 1.525225e-02	ci left: 6.180540e-01	ci right 6.275782e-01	k: 24913	n:40000
KS ci ratio: 1.801367e-01	ci left: 1.064539e-02	ci right 1.277639e-02	k: 467	n:40000
CIT   40000 perm   16 sec   (2551 perm/sec)   p_kst 1.167500e-02   p_cons 6.228250e-01   p_joint 3.035000e-02

Joint ci ratio: 1.002009e-01	ci left: 2.820987e-02	ci right 3.120506e-02	k: 1484	n:50000
Cons ci ratio: 1.367245e-02	ci left: 6.175124e-01	ci right 6.260335e-01	k: 31089	n:50000
KS ci ratio: 1.619621e-01	ci left: 1.064149e-02	ci right 1.253585e-02	k: 578	n:50000
CIT   50000 perm   19 sec   (2624 perm/sec)   p_kst 1.156000e-02   p_cons 6.217800e-01   p_joint 2.968000e-02

Joint ci ratio: 9.936399e-02	ci left: 2.402563e-02	ci right 2.655391e-02	k: 1516	n:60000
Cons ci ratio: 1.244357e-02	ci left: 6.193084e-01	ci right 6.270797e-01	k: 37392	n:60000
KS ci ratio: 1.490269e-01	ci left: 1.054987e-02	ci right 1.226455e-02	k: 683	n:60000
CIT   60000 perm   23 sec   (2649 perm/sec)   p_kst 1.138333e-02   p_cons 6.232000e-01   p_joint 2.526667e-02

Joint ci ratio: 9.759314e-02	ci left: 2.142800e-02	ci right 2.364039e-02	k: 1576	n:70000
Cons ci ratio: 1.134008e-02	ci left: 6.269978e-01	ci right 6.341628e-01	k: 44141	n:70000
KS ci ratio: 1.392128e-01	ci left: 1.041979e-02	ci right 1.199255e-02	k: 783	n:70000
CIT   70000 perm   26 sec   (2675 perm/sec)   p_kst 1.118571e-02   p_cons 6.305857e-01   p_joint 2.251429e-02

Joint ci ratio: 9.754458e-02	ci left: 1.882142e-02	ci right 2.076362e-02	k: 1582	n:80000
Cons ci ratio: 1.062587e-02	ci left: 6.264306e-01	ci right 6.331350e-01	k: 50383	n:80000
KS ci ratio: 1.311877e-01	ci left: 1.031295e-02	ci right 1.177284e-02	k: 882	n:80000
CIT   80000 perm   30 sec   (2704 perm/sec)   p_kst 1.102500e-02   p_cons 6.297875e-01   p_joint 1.977500e-02

Joint ci ratio: 8.725582e-02	ci left: 2.097544e-02	ci right 2.289999e-02	k: 1973	n:90000
Cons ci ratio: 1.001887e-02	ci left: 6.265912e-01	ci right 6.329116e-01	k: 56678	n:90000
KS ci ratio: 1.242155e-01	ci left: 1.026419e-02	ci right 1.163427e-02	k: 984	n:90000
CIT   90000 perm   34 sec   (2687 perm/sec)   p_kst 1.093333e-02   p_cons 6.297556e-01   p_joint 2.192222e-02

Joint ci ratio: 8.200424e-02	ci left: 2.142310e-02	ci right 2.326475e-02	k: 2233	n:100000
Cons ci ratio: 9.508726e-03	ci left: 6.265581e-01	ci right 6.325543e-01	k: 62956	n:100000
KS ci ratio: 1.143254e-01	ci left: 1.095526e-02	ci right 1.229330e-02	k: 1161	n:100000
CIT   100000 perm   37 sec   (2671 perm/sec)   p_kst 1.161000e-02   p_cons 6.295600e-01   p_joint 2.233000e-02

Joint ci ratio: 7.485024e-02	ci left: 2.341592e-02	ci right 2.524564e-02	k: 2675	n:110000
Cons ci ratio: 9.076403e-03	ci left: 6.261738e-01	ci right 6.318921e-01	k: 69194	n:110000
KS ci ratio: 1.096667e-01	ci left: 1.085176e-02	ci right 1.211965e-02	k: 1262	n:110000
CIT   110000 perm   41 sec   (2658 perm/sec)   p_kst 1.147273e-02   p_cons 6.290364e-01   p_joint 2.431818e-02

Joint ci ratio: 7.514368e-02	ci left: 2.134107e-02	ci right 2.301546e-02	k: 2660	n:120000
Cons ci ratio: 8.687264e-03	ci left: 6.264432e-01	ci right 6.319173e-01	k: 75502	n:120000
KS ci ratio: 1.044554e-01	ci left: 1.099371e-02	ci right 1.221340e-02	k: 1391	n:120000
CIT   120000 perm   46 sec   (2612 perm/sec)   p_kst 1.159167e-02   p_cons 6.291833e-01   p_joint 2.216667e-02

Joint ci ratio: 6.572941e-02	ci left: 2.575473e-02	ci right 2.751263e-02	k: 3461	n:130000
Cons ci ratio: 8.346161e-03	ci left: 6.265676e-01	ci right 6.318266e-01	k: 81796	n:130000
KS ci ratio: 1.010033e-01	ci left: 1.087499e-02	ci right 1.203927e-02	k: 1488	n:130000
CIT   130000 perm   50 sec   (2586 perm/sec)   p_kst 1.144615e-02   p_cons 6.292000e-01   p_joint 2.662308e-02

Joint ci ratio: 6.187324e-02	ci left: 2.700838e-02	ci right 2.873982e-02	k: 3901	n:140000
Cons ci ratio: 8.033581e-03	ci left: 6.271858e-01	ci right 6.322517e-01	k: 88161	n:140000
KS ci ratio: 9.716200e-02	ci left: 1.093412e-02	ci right 1.205767e-02	k: 1608	n:140000
CIT   140000 perm   55 sec   (2556 perm/sec)   p_kst 1.148571e-02   p_cons 6.297214e-01   p_joint 2.786429e-02

Outputting figure to mutsig2_images.part000000000038/CIT.14_6268_140000_0.011486_0.62972_0.027864.png
                gene_name: CIT
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 2 percent done.
CHST9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.859457e-02	ci left: 1.913119e-01	ci right 2.070637e-01	k: 1991	n:10000
Cons ci ratio: 5.711691e-02	ci left: 3.109600e-01	ci right 3.293449e-01	k: 3201	n:10000
KS ci ratio: 1.057003e-01	ci left: 1.144737e-01	ci right 1.273481e-01	k: 1208	n:10000
CHST9   10000 perm   2 sec   (4478 perm/sec)   p_kst 1.208000e-01   p_cons 3.201000e-01   p_joint 1.991000e-01

Joint ci ratio: 5.683430e-02	ci left: 1.866603e-01	ci right 1.976294e-01	k: 3842	n:20000
Cons ci ratio: 3.914568e-02	ci left: 3.273635e-01	ci right 3.404848e-01	k: 6678	n:20000
KS ci ratio: 7.538251e-02	ci left: 1.145924e-01	ci right 1.236187e-01	k: 2381	n:20000
CHST9   20000 perm   5 sec   (4169 perm/sec)   p_kst 1.190500e-01   p_cons 3.339000e-01   p_joint 1.921000e-01

Outputting figure to mutsig2_images.part000000000038/CHST9.10_1352_20000_0.11905_0.3339_0.1921.png
                gene_name: CHST9
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 4 percent done.
CLCN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.017051e-02	ci left: 9.320594e-01	ci right 9.416842e-01	k: 9370	n:10000
Cons ci ratio: 3.692647e-03	ci left: 9.892795e-01	ci right 9.930260e-01	k: 9913	n:10000
KS ci ratio: 1.599533e-02	ci left: 8.502907e-01	ci right 8.641005e-01	k: 8573	n:10000
CLCN4   10000 perm   2 sec   (4801 perm/sec)   p_kst 8.573000e-01   p_cons 9.913000e-01   p_joint 9.370000e-01

Outputting figure to mutsig2_images.part000000000038/CLCN4.9_2327_10000_0.8573_0.9913_0.937.png
                gene_name: CLCN4
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 6 percent done.
CHST10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.345662e-02	ci left: 5.687500e-01	ci right 5.882042e-01	k: 5785	n:10000
Cons ci ratio: 9.813331e-02	ci left: 1.308067e-01	ci right 1.444052e-01	k: 1375	n:10000
KS ci ratio: 9.635105e-03	ci left: 9.383791e-01	ci right 9.475607e-01	k: 9431	n:10000
CHST10   10000 perm   2 sec   (5073 perm/sec)   p_kst 9.431000e-01   p_cons 1.375000e-01   p_joint 5.785000e-01

Outputting figure to mutsig2_images.part000000000038/CHST10.8_1091_10000_0.9431_0.1375_0.5785.png
                gene_name: CHST10
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 8 percent done.
CHST15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.889536e-02	ci left: 6.384467e-01	ci right 6.572671e-01	k: 6479	n:10000
Cons ci ratio: 4.860600e-02	ci left: 3.844050e-01	ci right 4.036568e-01	k: 3940	n:10000
KS ci ratio: 3.155181e-02	ci left: 5.971464e-01	ci right 6.163914e-01	k: 6068	n:10000
CHST15   10000 perm   2 sec   (5578 perm/sec)   p_kst 6.068000e-01   p_cons 3.940000e-01   p_joint 6.479000e-01

Outputting figure to mutsig2_images.part000000000038/CHST15.8_1714_10000_0.6068_0.394_0.6479.png
                gene_name: CHST15
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 10 percent done.
CIZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.276270e-01	ci left: 2.551545e-02	ci right 3.216281e-02	k: 287	n:10000
Cons ci ratio: 5.297765e-02	ci left: 3.443228e-01	ci right 3.631625e-01	k: 3537	n:10000
KS ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
CIZ1   10000 perm   2 sec   (4727 perm/sec)   p_kst 9.800000e-03   p_cons 3.537000e-01   p_joint 2.870000e-02

Joint ci ratio: 1.950228e-01	ci left: 1.786671e-02	ci right 2.177465e-02	k: 395	n:20000
Cons ci ratio: 3.629784e-02	ci left: 3.616097e-01	ci right 3.750286e-01	k: 7366	n:20000
KS ci ratio: 2.684301e-01	ci left: 9.133859e-03	ci right 1.201110e-02	k: 210	n:20000
CIZ1   20000 perm   5 sec   (4224 perm/sec)   p_kst 1.050000e-02   p_cons 3.683000e-01   p_joint 1.975000e-02

Joint ci ratio: 1.371714e-01	ci left: 2.467957e-02	ci right 2.834624e-02	k: 794	n:30000
Cons ci ratio: 2.955969e-02	ci left: 3.640676e-01	ci right 3.750243e-01	k: 11086	n:30000
KS ci ratio: 2.120119e-01	ci left: 1.007160e-02	ci right 1.249111e-02	k: 337	n:30000
CIZ1   30000 perm   7 sec   (4003 perm/sec)   p_kst 1.123333e-02   p_cons 3.695333e-01   p_joint 2.646667e-02

Joint ci ratio: 1.544425e-01	ci left: 1.462475e-02	ci right 1.709626e-02	k: 633	n:40000
Cons ci ratio: 2.567053e-02	ci left: 3.635205e-01	ci right 3.729987e-01	k: 14730	n:40000
KS ci ratio: 1.789794e-01	ci left: 1.078871e-02	ci right 1.293303e-02	k: 473	n:40000
CIZ1   40000 perm   10 sec   (3924 perm/sec)   p_kst 1.182500e-02   p_cons 3.682500e-01   p_joint 1.582500e-02

Joint ci ratio: 1.269230e-01	ci left: 1.753064e-02	ci right 1.992570e-02	k: 935	n:50000
Cons ci ratio: 2.300662e-02	ci left: 3.630923e-01	ci right 3.715631e-01	k: 18366	n:50000
KS ci ratio: 1.598797e-01	ci left: 1.092953e-02	ci right 1.284776e-02	k: 593	n:50000
CIZ1   50000 perm   13 sec   (3799 perm/sec)   p_kst 1.186000e-02   p_cons 3.673200e-01   p_joint 1.870000e-02

Joint ci ratio: 1.230481e-01	ci left: 1.560893e-02	ci right 1.767154e-02	k: 997	n:60000
Cons ci ratio: 2.143150e-02	ci left: 3.541293e-01	ci right 3.618177e-01	k: 21478	n:60000
KS ci ratio: 1.458256e-01	ci left: 1.103162e-02	ci right 1.278274e-02	k: 713	n:60000
CIZ1   60000 perm   16 sec   (3747 perm/sec)   p_kst 1.188333e-02   p_cons 3.579667e-01   p_joint 1.661667e-02

Joint ci ratio: 1.025235e-01	ci left: 1.940733e-02	ci right 2.151840e-02	k: 1431	n:70000
Cons ci ratio: 1.989228e-02	ci left: 3.532500e-01	ci right 3.603618e-01	k: 24976	n:70000
KS ci ratio: 1.350905e-01	ci left: 1.108223e-02	ci right 1.270147e-02	k: 831	n:70000
CIZ1   70000 perm   20 sec   (3567 perm/sec)   p_kst 1.187143e-02   p_cons 3.568000e-01   p_joint 2.044286e-02

Joint ci ratio: 1.024390e-01	ci left: 1.705342e-02	ci right 1.890677e-02	k: 1437	n:80000
Cons ci ratio: 1.862027e-02	ci left: 3.531675e-01	ci right 3.598179e-01	k: 28519	n:80000
KS ci ratio: 1.261549e-01	ci left: 1.117219e-02	ci right 1.268851e-02	k: 953	n:80000
CIZ1   80000 perm   23 sec   (3488 perm/sec)   p_kst 1.191250e-02   p_cons 3.564875e-01   p_joint 1.796250e-02

Joint ci ratio: 1.006054e-01	ci left: 1.575365e-02	ci right 1.743327e-02	k: 1492	n:90000
Cons ci ratio: 1.754558e-02	ci left: 3.536139e-01	ci right 3.598842e-01	k: 32107	n:90000
KS ci ratio: 1.217403e-01	ci left: 1.069511e-02	ci right 1.209221e-02	k: 1024	n:90000
CIZ1   90000 perm   26 sec   (3411 perm/sec)   p_kst 1.137778e-02   p_cons 3.567444e-01   p_joint 1.657778e-02

Joint ci ratio: 9.293600e-02	ci left: 1.666700e-02	ci right 1.830116e-02	k: 1747	n:100000
Cons ci ratio: 1.660739e-02	ci left: 3.548182e-01	ci right 3.607701e-01	k: 35779	n:100000
KS ci ratio: 1.170568e-01	ci left: 1.044043e-02	ci right 1.174816e-02	k: 1108	n:100000
CIZ1   100000 perm   30 sec   (3357 perm/sec)   p_kst 1.108000e-02   p_cons 3.577900e-01   p_joint 1.747000e-02

Joint ci ratio: 9.102084e-02	ci left: 1.582652e-02	ci right 1.734458e-02	k: 1823	n:110000
Cons ci ratio: 1.583640e-02	ci left: 3.549030e-01	ci right 3.605773e-01	k: 39351	n:110000
KS ci ratio: 1.117901e-01	ci left: 1.043619e-02	ci right 1.168070e-02	k: 1215	n:110000
CIZ1   110000 perm   33 sec   (3303 perm/sec)   p_kst 1.104545e-02   p_cons 3.577364e-01   p_joint 1.657273e-02

Joint ci ratio: 8.860183e-02	ci left: 1.533838e-02	ci right 1.676848e-02	k: 1925	n:120000
Cons ci ratio: 1.516122e-02	ci left: 3.550539e-01	ci right 3.604863e-01	k: 42932	n:120000
KS ci ratio: 1.072990e-01	ci left: 1.040943e-02	ci right 1.159772e-02	k: 1319	n:120000
CIZ1   120000 perm   37 sec   (3265 perm/sec)   p_kst 1.099167e-02   p_cons 3.577667e-01   p_joint 1.604167e-02

Joint ci ratio: 8.948636e-02	ci left: 1.389480e-02	ci right 1.520391e-02	k: 1890	n:130000
Cons ci ratio: 1.456320e-02	ci left: 3.552627e-01	ci right 3.604821e-01	k: 46523	n:130000
KS ci ratio: 1.034191e-01	ci left: 1.036514e-02	ci right 1.150299e-02	k: 1420	n:130000
CIZ1   130000 perm   40 sec   (3241 perm/sec)   p_kst 1.092308e-02   p_cons 3.578692e-01   p_joint 1.453846e-02

Joint ci ratio: 8.136945e-02	ci left: 1.564316e-02	ci right 1.697698e-02	k: 2282	n:140000
Cons ci ratio: 1.405021e-02	ci left: 3.548106e-01	ci right 3.598381e-01	k: 50025	n:140000
KS ci ratio: 1.001649e-01	ci left: 1.027909e-02	ci right 1.136989e-02	k: 1514	n:140000
CIZ1   140000 perm   44 sec   (3213 perm/sec)   p_kst 1.081429e-02   p_cons 3.573214e-01   p_joint 1.630000e-02

Joint ci ratio: 7.981419e-02	ci left: 1.519458e-02	ci right 1.646423e-02	k: 2373	n:150000
Cons ci ratio: 1.357838e-02	ci left: 3.547413e-01	ci right 3.595976e-01	k: 53575	n:150000
KS ci ratio: 9.650483e-02	ci left: 1.035465e-02	ci right 1.141105e-02	k: 1631	n:150000
CIZ1   150000 perm   47 sec   (3163 perm/sec)   p_kst 1.087333e-02   p_cons 3.571667e-01   p_joint 1.582000e-02

Outputting figure to mutsig2_images.part000000000038/CIZ1.8_2761_150000_0.010873_0.35717_0.01582.png
                gene_name: CIZ1
               theta_stop: 0.097 
                    nperm: 150000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 12 percent done.
CLCN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.820846e-02	ci left: 6.494124e-01	ci right 6.680951e-01	k: 6588	n:10000
KS ci ratio: 1.789283e-02	ci left: 8.200516e-01	ci right 8.349571e-01	k: 8276	n:10000
CLCN3   10000 perm   2 sec   (5173 perm/sec)   p_kst 8.276000e-01   p_cons 6.588000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CLCN3.8_2653_10000_0.8276_0.6588_1.png
                gene_name: CLCN3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
CHST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.250506e-02	ci left: 7.435143e-01	ci right 7.605386e-01	k: 7521	n:10000
KS ci ratio: 2.805805e-02	ci left: 6.518275e-01	ci right 6.704785e-01	k: 6612	n:10000
CHST1   10000 perm   2 sec   (6369 perm/sec)   p_kst 6.612000e-01   p_cons 7.521000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CHST1.7_1240_10000_0.6612_0.7521_1.png
                gene_name: CHST1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
CHST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.383317e-02	ci left: 7.212834e-01	ci right 7.387824e-01	k: 7301	n:10000
Cons ci ratio: 3.285669e-02	ci left: 5.775764e-01	ci right 5.969727e-01	k: 5873	n:10000
KS ci ratio: 4.358455e-02	ci left: 4.373218e-01	ci right 4.569090e-01	k: 4471	n:10000
CHST4   10000 perm   2 sec   (5571 perm/sec)   p_kst 4.471000e-01   p_cons 5.873000e-01   p_joint 7.301000e-01

Outputting figure to mutsig2_images.part000000000038/CHST4.7_1165_10000_0.4471_0.5873_0.7301.png
                gene_name: CHST4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 18 percent done.
CIITA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.130776e-02	ci left: 6.008614e-01	ci right 6.200742e-01	k: 6105	n:10000
KS ci ratio: 1.416858e-02	ci left: 8.780732e-01	ci right 8.907019e-01	k: 8845	n:10000
CIITA   10000 perm   2 sec   (5026 perm/sec)   p_kst 8.845000e-01   p_cons 6.105000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CIITA.7_3469_10000_0.8845_0.6105_1.png
                gene_name: CIITA
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
CLCA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.268756e-02	ci left: 5.800845e-01	ci right 5.994631e-01	k: 5898	n:10000
Cons ci ratio: 9.047443e-03	ci left: 9.450255e-01	ci right 9.537104e-01	k: 9495	n:10000
KS ci ratio: 4.556899e-02	ci left: 4.154834e-01	ci right 4.349602e-01	k: 4252	n:10000
CLCA2   10000 perm   2 sec   (5189 perm/sec)   p_kst 4.252000e-01   p_cons 9.495000e-01   p_joint 5.898000e-01

Outputting figure to mutsig2_images.part000000000038/CLCA2.7_2888_10000_0.4252_0.9495_0.5898.png
                gene_name: CLCA2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 22 percent done.
CHSY3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.661901e-01	ci left: 4.830553e-02	ci right 5.715732e-02	k: 526	n:10000
Cons ci ratio: 3.983416e-02	ci left: 4.820550e-01	ci right 5.017497e-01	k: 4919	n:10000
KS ci ratio: 2.418322e-01	ci left: 2.249916e-02	ci right 2.878131e-02	k: 255	n:10000
CHSY3   10000 perm   2 sec   (5537 perm/sec)   p_kst 2.550000e-02   p_cons 4.919000e-01   p_joint 5.260000e-02

Joint ci ratio: 1.124792e-01	ci left: 5.402115e-02	ci right 6.050832e-02	k: 1144	n:20000
Cons ci ratio: 2.855791e-02	ci left: 4.781012e-01	ci right 4.920032e-01	k: 9701	n:20000
KS ci ratio: 1.720426e-01	ci left: 2.311997e-02	ci right 2.751951e-02	k: 505	n:20000
CHSY3   20000 perm   4 sec   (4751 perm/sec)   p_kst 2.525000e-02   p_cons 4.850500e-01   p_joint 5.720000e-02

Joint ci ratio: 8.696205e-02	ci left: 6.066825e-02	ci right 6.621666e-02	k: 1902	n:30000
Cons ci ratio: 2.348123e-02	ci left: 4.758979e-01	ci right 4.872390e-01	k: 14447	n:30000
KS ci ratio: 1.397197e-01	ci left: 2.377778e-02	ci right 2.738156e-02	k: 766	n:30000
CHSY3   30000 perm   7 sec   (4552 perm/sec)   p_kst 2.553333e-02   p_cons 4.815667e-01   p_joint 6.340000e-02

Joint ci ratio: 5.730664e-02	ci left: 1.017159e-01	ci right 1.077416e-01	k: 4188	n:40000
Cons ci ratio: 1.954544e-02	ci left: 4.964627e-01	ci right 5.062871e-01	k: 20055	n:40000
KS ci ratio: 1.215923e-01	ci left: 2.378312e-02	ci right 2.688631e-02	k: 1012	n:40000
CHSY3   40000 perm   9 sec   (4403 perm/sec)   p_kst 2.530000e-02   p_cons 5.013750e-01   p_joint 1.047000e-01

Joint ci ratio: 5.672594e-02	ci left: 8.470162e-02	ci right 8.966644e-02	k: 4358	n:50000
Cons ci ratio: 1.742050e-02	ci left: 4.987474e-01	ci right 5.075322e-01	k: 25157	n:50000
KS ci ratio: 1.085909e-01	ci left: 2.401904e-02	ci right 2.679643e-02	k: 1269	n:50000
CHSY3   50000 perm   12 sec   (4267 perm/sec)   p_kst 2.538000e-02   p_cons 5.031400e-01   p_joint 8.716000e-02

Joint ci ratio: 6.138863e-02	ci left: 6.167655e-02	ci right 6.559912e-02	k: 3817	n:60000
Cons ci ratio: 1.587225e-02	ci left: 5.000909e-01	ci right 5.081087e-01	k: 30246	n:60000
KS ci ratio: 9.866558e-02	ci left: 2.436717e-02	ci right 2.691233e-02	k: 1537	n:60000
CHSY3   60000 perm   15 sec   (4013 perm/sec)   p_kst 2.561667e-02   p_cons 5.041000e-01   p_joint 6.361667e-02

Outputting figure to mutsig2_images.part000000000038/CHSY3.6_2661_60000_0.025617_0.5041_0.063617.png
                gene_name: CHSY3
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.066 

Current progress: 24 percent done.
CHUK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.066107e-02	ci left: 7.743839e-01	ci right 7.906512e-01	k: 7826	n:10000
Cons ci ratio: 3.892077e-02	ci left: 4.936506e-01	ci right 5.133474e-01	k: 5035	n:10000
KS ci ratio: 3.132751e-02	ci left: 6.005602e-01	ci right 6.197756e-01	k: 6102	n:10000
CHUK   10000 perm   2 sec   (4590 perm/sec)   p_kst 6.102000e-01   p_cons 5.035000e-01   p_joint 7.826000e-01

Outputting figure to mutsig2_images.part000000000038/CHUK.6_2322_10000_0.6102_0.5035_0.7826.png
                gene_name: CHUK
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 25 percent done.
CIC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.837967e-02	ci left: 5.006505e-01	ci right 5.203434e-01	k: 5105	n:10000
Cons ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
KS ci ratio: 4.124628e-02	ci left: 4.646716e-01	ci right 4.843433e-01	k: 4745	n:10000
CIC   10000 perm   2 sec   (4345 perm/sec)   p_kst 4.745000e-01   p_cons 3.885000e-01   p_joint 5.105000e-01

Outputting figure to mutsig2_images.part000000000038/CIC.6_4907_10000_0.4745_0.3885_0.5105.png
                gene_name: CIC
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 27 percent done.
CILP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.260159e-02	ci left: 7.418966e-01	ci right 7.589573e-01	k: 7505	n:10000
KS ci ratio: 8.082601e-03	ci left: 9.552412e-01	ci right 9.630885e-01	k: 9593	n:10000
CILP   10000 perm   2 sec   (4790 perm/sec)   p_kst 9.593000e-01   p_cons 7.505000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CILP.6_3587_10000_0.9593_0.7505_1.png
                gene_name: CILP
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
CLASP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.651998e-01	ci left: 4.888186e-02	ci right 5.778061e-02	k: 532	n:10000
Cons ci ratio: 1.064023e-01	ci left: 1.131062e-01	ci right 1.259164e-01	k: 1194	n:10000
KS ci ratio: 1.548769e-01	ci left: 5.552036e-02	ci right 6.493785e-02	k: 601	n:10000
CLASP1   10000 perm   2 sec   (4471 perm/sec)   p_kst 6.010000e-02   p_cons 1.194000e-01   p_joint 5.320000e-02

Joint ci ratio: 1.362337e-01	ci left: 3.703607e-02	ci right 4.249877e-02	k: 794	n:20000
Cons ci ratio: 7.783271e-02	ci left: 1.081524e-01	ci right 1.169606e-01	k: 2250	n:20000
KS ci ratio: 1.084663e-01	ci left: 5.796573e-02	ci right 6.466251e-02	k: 1225	n:20000
CLASP1   20000 perm   5 sec   (3901 perm/sec)   p_kst 6.125000e-02   p_cons 1.125000e-01   p_joint 3.970000e-02

Joint ci ratio: 8.664648e-02	ci left: 6.109278e-02	ci right 6.665872e-02	k: 1915	n:30000
Cons ci ratio: 6.307267e-02	ci left: 1.104574e-01	ci right 1.176842e-01	k: 3421	n:30000
KS ci ratio: 8.908016e-02	ci left: 5.792607e-02	ci right 6.335940e-02	k: 1818	n:30000
CLASP1   30000 perm   8 sec   (3799 perm/sec)   p_kst 6.060000e-02   p_cons 1.140333e-01   p_joint 6.383333e-02

Outputting figure to mutsig2_images.part000000000038/CLASP1.6_4825_30000_0.0606_0.11403_0.063833.png
                gene_name: CLASP1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.067 

Current progress: 31 percent done.
CLCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.847238e-02	ci left: 6.451864e-01	ci right 6.639235e-01	k: 6546	n:10000
Cons ci ratio: 5.498298e-02	ci left: 3.276348e-01	ci right 3.462602e-01	k: 3369	n:10000
KS ci ratio: 2.721092e-02	ci left: 6.655187e-01	ci right 6.839794e-01	k: 6748	n:10000
CLCA1   10000 perm   2 sec   (4840 perm/sec)   p_kst 6.748000e-01   p_cons 3.369000e-01   p_joint 6.546000e-01

Outputting figure to mutsig2_images.part000000000038/CLCA1.6_2801_10000_0.6748_0.3369_0.6546.png
                gene_name: CLCA1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 33 percent done.
CLCA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.493343e-02	ci left: 5.474992e-01	ci right 5.670674e-01	k: 5573	n:10000
Cons ci ratio: 6.766072e-02	ci left: 2.427230e-01	ci right 2.598221e-01	k: 2512	n:10000
KS ci ratio: 2.985179e-02	ci left: 6.233651e-01	ci right 6.423575e-01	k: 6329	n:10000
CLCA4   10000 perm   2 sec   (5011 perm/sec)   p_kst 6.329000e-01   p_cons 2.512000e-01   p_joint 5.573000e-01

Outputting figure to mutsig2_images.part000000000038/CLCA4.6_2816_10000_0.6329_0.2512_0.5573.png
                gene_name: CLCA4
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 35 percent done.
CLCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.959467e-02	ci left: 2.929109e-01	ci right 3.110046e-01	k: 3019	n:10000
Cons ci ratio: 4.080238e-02	ci left: 4.700652e-01	ci right 4.897466e-01	k: 4799	n:10000
KS ci ratio: 7.803245e-02	ci left: 1.935775e-01	ci right 2.093968e-01	k: 2014	n:10000
CLCC1   10000 perm   2 sec   (5184 perm/sec)   p_kst 2.014000e-01   p_cons 4.799000e-01   p_joint 3.019000e-01

Outputting figure to mutsig2_images.part000000000038/CLCC1.6_1696_10000_0.2014_0.4799_0.3019.png
                gene_name: CLCC1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 37 percent done.
CLCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.786218e-02	ci left: 1.586572e-01	ci right 1.733379e-01	k: 1659	n:10000
Cons ci ratio: 9.719346e-02	ci left: 1.330589e-01	ci right 1.467516e-01	k: 1398	n:10000
KS ci ratio: 6.148482e-02	ci left: 2.800289e-01	ci right 2.978941e-01	k: 2889	n:10000
CLCN1   10000 perm   2 sec   (5034 perm/sec)   p_kst 2.889000e-01   p_cons 1.398000e-01   p_joint 1.659000e-01

Outputting figure to mutsig2_images.part000000000038/CLCN1.6_3059_10000_0.2889_0.1398_0.1659.png
                gene_name: CLCN1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 39 percent done.
CHRNB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.203560e-01	ci left: 9.009981e-02	ci right 1.017368e-01	k: 958	n:10000
Cons ci ratio: 1.381586e-01	ci left: 6.933115e-02	ci right 7.971834e-02	k: 744	n:10000
KS ci ratio: 8.023269e-02	ci left: 1.849114e-01	ci right 2.004680e-01	k: 1926	n:10000
CHRNB2   10000 perm   2 sec   (5953 perm/sec)   p_kst 1.926000e-01   p_cons 7.440000e-02   p_joint 9.580000e-02

Joint ci ratio: 9.364690e-02	ci left: 7.676561e-02	ci right 8.435686e-02	k: 1610	n:20000
Cons ci ratio: 1.038086e-01	ci left: 6.308517e-02	ci right 7.004149e-02	k: 1330	n:20000
KS ci ratio: 5.651594e-02	ci left: 1.883911e-01	ci right 1.993980e-01	k: 3877	n:20000
CHRNB2   20000 perm   4 sec   (5092 perm/sec)   p_kst 1.938500e-01   p_cons 6.650000e-02   p_joint 8.050000e-02

Joint ci ratio: 8.952635e-02	ci left: 5.737130e-02	ci right 6.278095e-02	k: 1801	n:30000
Cons ci ratio: 8.483965e-02	ci left: 6.360800e-02	ci right 6.927632e-02	k: 1992	n:30000
KS ci ratio: 4.607160e-02	ci left: 1.899019e-01	ci right 1.988907e-01	k: 5831	n:30000
CHRNB2   30000 perm   6 sec   (4808 perm/sec)   p_kst 1.943667e-01   p_cons 6.640000e-02   p_joint 6.003333e-02

Outputting figure to mutsig2_images.part000000000038/CHRNB2.5_1533_30000_0.19437_0.0664_0.060033.png
                gene_name: CHRNB2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.063 

Current progress: 41 percent done.
CHRNE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.896462e-02	ci left: 2.973720e-01	ci right 3.155408e-01	k: 3064	n:10000
Cons ci ratio: 1.186529e-01	ci left: 9.253239e-02	ci right 1.043027e-01	k: 983	n:10000
KS ci ratio: 4.701526e-02	ci left: 4.003376e-01	ci right 4.197148e-01	k: 4100	n:10000
CHRNE   10000 perm   2 sec   (5201 perm/sec)   p_kst 4.100000e-01   p_cons 9.830000e-02   p_joint 3.064000e-01

Joint ci ratio: 4.432743e-02	ci left: 2.748274e-01	ci right 2.873363e-01	k: 5621	n:20000
Cons ci ratio: 7.890317e-02	ci left: 1.054990e-01	ci right 1.142147e-01	k: 2196	n:20000
KS ci ratio: 3.312113e-02	ci left: 4.050172e-01	ci right 4.187084e-01	k: 8237	n:20000
CHRNE   20000 perm   4 sec   (4697 perm/sec)   p_kst 4.118500e-01   p_cons 1.098000e-01   p_joint 2.810500e-01

Outputting figure to mutsig2_images.part000000000038/CHRNE.5_1530_20000_0.41185_0.1098_0.28105.png
                gene_name: CHRNE
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 43 percent done.
CHSY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.570440e-02	ci left: 1.655342e-01	ci right 1.804568e-01	k: 1729	n:10000
Cons ci ratio: 1.365803e-01	ci left: 7.088017e-02	ci right 8.136835e-02	k: 760	n:10000
KS ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
CHSY1   10000 perm   2 sec   (5214 perm/sec)   p_kst 7.860000e-02   p_cons 7.600000e-02   p_joint 1.729000e-01

Joint ci ratio: 8.800347e-02	ci left: 8.626460e-02	ci right 9.425499e-02	k: 1804	n:20000
Cons ci ratio: 9.988490e-02	ci left: 6.791774e-02	ci right 7.510743e-02	k: 1429	n:20000
KS ci ratio: 9.493467e-02	ci left: 7.480898e-02	ci right 8.231408e-02	k: 1570	n:20000
CHSY1   20000 perm   4 sec   (4585 perm/sec)   p_kst 7.850000e-02   p_cons 7.145000e-02   p_joint 9.020000e-02

Outputting figure to mutsig2_images.part000000000038/CHSY1.5_2421_20000_0.0785_0.07145_0.0902.png
                gene_name: CHSY1
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.094 

Current progress: 45 percent done.
CIRH1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.402496e-02	ci left: 3.354805e-01	ci right 3.542099e-01	k: 3448	n:10000
Cons ci ratio: 3.355274e-02	ci left: 5.673461e-01	ci right 5.868090e-01	k: 5771	n:10000
KS ci ratio: 7.130045e-02	ci left: 2.237558e-01	ci right 2.404006e-01	k: 2320	n:10000
CIRH1A   10000 perm   2 sec   (5198 perm/sec)   p_kst 2.320000e-01   p_cons 5.771000e-01   p_joint 3.448000e-01

Outputting figure to mutsig2_images.part000000000038/CIRH1A.5_2125_10000_0.232_0.5771_0.3448.png
                gene_name: CIRH1A
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 47 percent done.
CKAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.652199e-02	ci left: 1.628811e-01	ci right 1.777115e-01	k: 1702	n:10000
Cons ci ratio: 2.086194e-01	ci left: 3.053425e-02	ci right 3.774046e-02	k: 340	n:10000
KS ci ratio: 3.460197e-02	ci left: 5.522089e-01	ci right 5.717549e-01	k: 5620	n:10000
CKAP4   10000 perm   2 sec   (5337 perm/sec)   p_kst 5.620000e-01   p_cons 3.400000e-02   p_joint 1.702000e-01

Joint ci ratio: 6.389098e-02	ci left: 1.533154e-01	ci right 1.634841e-01	k: 3167	n:20000
Cons ci ratio: 1.436398e-01	ci left: 3.331605e-02	ci right 3.852000e-02	k: 717	n:20000
KS ci ratio: 2.452601e-02	ci left: 5.539386e-01	ci right 5.677437e-01	k: 11217	n:20000
CKAP4   20000 perm   4 sec   (4967 perm/sec)   p_kst 5.608500e-01   p_cons 3.585000e-02   p_joint 1.583500e-01

Joint ci ratio: 5.140431e-02	ci left: 1.581767e-01	ci right 1.665554e-01	k: 4870	n:30000
Cons ci ratio: 1.153520e-01	ci left: 3.492467e-02	ci right 3.923224e-02	k: 1111	n:30000
KS ci ratio: 2.006990e-02	ci left: 5.541271e-01	ci right 5.653947e-01	k: 16793	n:30000
CKAP4   30000 perm   6 sec   (4778 perm/sec)   p_kst 5.597667e-01   p_cons 3.703333e-02   p_joint 1.623333e-01

Joint ci ratio: 5.040890e-02	ci left: 1.280047e-01	ci right 1.346489e-01	k: 5252	n:40000
Cons ci ratio: 1.068962e-01	ci left: 3.078376e-02	ci right 3.428453e-02	k: 1300	n:40000
KS ci ratio: 1.747900e-02	ci left: 5.521155e-01	ci right 5.618762e-01	k: 22280	n:40000
CKAP4   40000 perm   9 sec   (4612 perm/sec)   p_kst 5.570000e-01   p_cons 3.250000e-02   p_joint 1.313000e-01

Joint ci ratio: 4.804832e-02	ci left: 1.146501e-01	ci right 1.203143e-01	k: 5873	n:50000
Cons ci ratio: 8.999250e-02	ci left: 3.491234e-02	ci right 3.822175e-02	k: 1827	n:50000
KS ci ratio: 1.558191e-02	ci left: 5.542743e-01	ci right 5.629989e-01	k: 27932	n:50000
CKAP4   50000 perm   11 sec   (4498 perm/sec)   p_kst 5.586400e-01   p_cons 3.654000e-02   p_joint 1.174600e-01

Outputting figure to mutsig2_images.part000000000038/CKAP4.5_1817_50000_0.55864_0.03654_0.11746.png
                gene_name: CKAP4
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 49 percent done.
CKM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.795959e-02	ci left: 5.061517e-01	ci right 5.258389e-01	k: 5160	n:10000
KS ci ratio: 2.169017e-02	ci left: 7.571705e-01	ci right 7.738746e-01	k: 7656	n:10000
CKM   10000 perm   2 sec   (5229 perm/sec)   p_kst 7.656000e-01   p_cons 5.160000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CKM.5_1174_10000_0.7656_0.516_1.png
                gene_name: CKM
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
CKMT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.231802e-02	ci left: 7.466492e-01	ci right 7.636020e-01	k: 7552	n:10000
Cons ci ratio: 1.127940e-02	ci left: 9.182193e-01	ci right 9.287325e-01	k: 9236	n:10000
KS ci ratio: 3.251226e-02	ci left: 5.826932e-01	ci right 6.020529e-01	k: 5924	n:10000
CKMT2   10000 perm   2 sec   (6213 perm/sec)   p_kst 5.924000e-01   p_cons 9.236000e-01   p_joint 7.552000e-01

Outputting figure to mutsig2_images.part000000000038/CKMT2.5_1296_10000_0.5924_0.9236_0.7552.png
                gene_name: CKMT2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 53 percent done.
CLASP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.225164e-02	ci left: 7.477617e-01	ci right 7.646888e-01	k: 7563	n:10000
Cons ci ratio: 1.105432e-02	ci left: 9.211069e-01	ci right 9.314431e-01	k: 9264	n:10000
KS ci ratio: 3.640140e-02	ci left: 5.270673e-01	ci right 5.467112e-01	k: 5369	n:10000
CLASP2   10000 perm   2 sec   (4522 perm/sec)   p_kst 5.369000e-01   p_cons 9.264000e-01   p_joint 7.563000e-01

Outputting figure to mutsig2_images.part000000000038/CLASP2.5_4673_10000_0.5369_0.9264_0.7563.png
                gene_name: CLASP2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 55 percent done.
CLCN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.206323e-02	ci left: 5.894169e-01	ci right 6.087254e-01	k: 5991	n:10000
Cons ci ratio: 6.994737e-02	ci left: 2.305695e-01	ci right 2.473828e-01	k: 2389	n:10000
KS ci ratio: 1.783640e-02	ci left: 8.209666e-01	ci right 8.358415e-01	k: 8285	n:10000
CLCN5   10000 perm   2 sec   (4318 perm/sec)   p_kst 8.285000e-01   p_cons 2.389000e-01   p_joint 5.991000e-01

Outputting figure to mutsig2_images.part000000000038/CLCN5.5_2503_10000_0.8285_0.2389_0.5991.png
                gene_name: CLCN5
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 57 percent done.
CLCN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.907883e-02	ci left: 8.006485e-01	ci right 8.161714e-01	k: 8085	n:10000
Cons ci ratio: 2.981327e-02	ci left: 6.239682e-01	ci right 6.429540e-01	k: 6335	n:10000
KS ci ratio: 4.861618e-02	ci left: 3.843054e-01	ci right 4.035564e-01	k: 3939	n:10000
CLCN6   10000 perm   2 sec   (4734 perm/sec)   p_kst 3.939000e-01   p_cons 6.335000e-01   p_joint 8.085000e-01

Outputting figure to mutsig2_images.part000000000038/CLCN6.5_2712_10000_0.3939_0.6335_0.8085.png
                gene_name: CLCN6
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 59 percent done.
CHRNB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.045373e-02	ci left: 2.869643e-01	ci right 3.049547e-01	k: 2959	n:10000
Cons ci ratio: 1.109326e-01	ci left: 1.048095e-01	ci right 1.172181e-01	k: 1109	n:10000
KS ci ratio: 4.727859e-02	ci left: 3.976482e-01	ci right 4.170058e-01	k: 4073	n:10000
CHRNB3   10000 perm   2 sec   (5711 perm/sec)   p_kst 4.073000e-01   p_cons 1.109000e-01   p_joint 2.959000e-01

Joint ci ratio: 4.295344e-02	ci left: 2.876416e-01	ci right 3.003184e-01	k: 5879	n:20000
Cons ci ratio: 7.742634e-02	ci left: 1.091844e-01	ci right 1.180283e-01	k: 2271	n:20000
KS ci ratio: 3.355216e-02	ci left: 3.987842e-01	ci right 4.124432e-01	k: 8112	n:20000
CHRNB3   20000 perm   4 sec   (5019 perm/sec)   p_kst 4.056000e-01   p_cons 1.135500e-01   p_joint 2.939500e-01

Outputting figure to mutsig2_images.part000000000038/CHRNB3.4_1401_20000_0.4056_0.11355_0.29395.png
                gene_name: CHRNB3
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 61 percent done.
CHRND
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.250553e-02	ci left: 5.827935e-01	ci right 6.021526e-01	k: 5925	n:10000
KS ci ratio: 2.191967e-02	ci left: 7.533254e-01	ci right 7.701219e-01	k: 7618	n:10000
CHRND   10000 perm   2 sec   (5512 perm/sec)   p_kst 7.618000e-01   p_cons 5.925000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CHRND.4_1602_10000_0.7618_0.5925_1.png
                gene_name: CHRND
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
CIR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.269727e-02	ci left: 8.991872e-01	ci right 9.107756e-01	k: 9051	n:10000
KS ci ratio: 2.564880e-02	ci left: 6.911127e-01	ci right 7.091706e-01	k: 7002	n:10000
CIR1   10000 perm   2 sec   (5695 perm/sec)   p_kst 7.002000e-01   p_cons 9.051000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CIR1.4_1393_10000_0.7002_0.9051_1.png
                gene_name: CIR1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
CLCN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.400175e-02	ci left: 8.805295e-01	ci right 8.930442e-01	k: 8869	n:10000
KS ci ratio: 1.914040e-02	ci left: 7.996335e-01	ci right 8.151870e-01	k: 8075	n:10000
CLCN2   10000 perm   2 sec   (5446 perm/sec)   p_kst 8.075000e-01   p_cons 8.869000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CLCN2.4_2793_10000_0.8075_0.8869_1.png
                gene_name: CLCN2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
CLDN10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.575267e-02	ci left: 6.893987e-01	ci right 7.074856e-01	k: 6985	n:10000
Cons ci ratio: 1.837348e-02	ci left: 8.122256e-01	ci right 8.273876e-01	k: 8199	n:10000
KS ci ratio: 3.696871e-02	ci left: 5.193596e-01	ci right 5.390234e-01	k: 5292	n:10000
CLDN10   10000 perm   2 sec   (6053 perm/sec)   p_kst 5.292000e-01   p_cons 8.199000e-01   p_joint 6.985000e-01

Outputting figure to mutsig2_images.part000000000038/CLDN10.4_925_10000_0.5292_0.8199_0.6985.png
                gene_name: CLDN10
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 69 percent done.
CHRNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.382151e-02	ci left: 5.634356e-01	ci right 5.829217e-01	k: 5732	n:10000
KS ci ratio: 3.227051e-02	ci left: 5.863057e-01	ci right 6.056384e-01	k: 5960	n:10000
CHRNB1   10000 perm   2 sec   (5534 perm/sec)   p_kst 5.960000e-01   p_cons 5.732000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CHRNB1.3_1550_10000_0.596_0.5732_1.png
                gene_name: CHRNB1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
CHRNG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.892090e-03	ci left: 9.665720e-01	ci right 9.733506e-01	k: 9701	n:10000
Cons ci ratio: 8.886211e-03	ci left: 9.467940e-01	ci right 9.553408e-01	k: 9512	n:10000
KS ci ratio: 1.551522e-02	ci left: 8.577378e-01	ci right 8.712491e-01	k: 8646	n:10000
CHRNG   10000 perm   2 sec   (4993 perm/sec)   p_kst 8.646000e-01   p_cons 9.512000e-01   p_joint 9.701000e-01

Outputting figure to mutsig2_images.part000000000038/CHRNG.3_1602_10000_0.8646_0.9512_0.9701.png
                gene_name: CHRNG
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 73 percent done.
CHST11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.692423e-02	ci left: 5.199601e-01	ci right 5.396225e-01	k: 5298	n:10000
Cons ci ratio: 8.138550e-02	ci left: 1.805807e-01	ci right 1.960013e-01	k: 1882	n:10000
KS ci ratio: 5.822979e-03	ci left: 9.754639e-01	ci right 9.812528e-01	k: 9785	n:10000
CHST11   10000 perm   2 sec   (6070 perm/sec)   p_kst 9.785000e-01   p_cons 1.882000e-01   p_joint 5.298000e-01

Outputting figure to mutsig2_images.part000000000038/CHST11.3_1071_10000_0.9785_0.1882_0.5298.png
                gene_name: CHST11
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 75 percent done.
CHST12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.838285e-02	ci left: 3.865951e-01	ci right 4.058654e-01	k: 3962	n:10000
Cons ci ratio: 9.048988e-02	ci left: 1.508034e-01	ci right 1.651964e-01	k: 1579	n:10000
KS ci ratio: 1.531595e-02	ci left: 8.608001e-01	ci right 8.741851e-01	k: 8676	n:10000
CHST12   10000 perm   2 sec   (5403 perm/sec)   p_kst 8.676000e-01   p_cons 1.579000e-01   p_joint 3.962000e-01

Outputting figure to mutsig2_images.part000000000038/CHST12.3_1249_10000_0.8676_0.1579_0.3962.png
                gene_name: CHST12
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 76 percent done.
CHST5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.302283e-02	ci left: 2.154651e-01	ci right 2.318962e-01	k: 2236	n:10000
Cons ci ratio: 1.252558e-01	ci left: 8.358655e-02	ci right 9.485408e-02	k: 891	n:10000
KS ci ratio: 1.614530e-02	ci left: 8.479456e-01	ci right 8.618469e-01	k: 8550	n:10000
CHST5   10000 perm   2 sec   (5709 perm/sec)   p_kst 8.550000e-01   p_cons 8.910000e-02   p_joint 2.236000e-01

Joint ci ratio: 4.993441e-02	ci left: 2.296332e-01	ci right 2.414437e-01	k: 4710	n:20000
Cons ci ratio: 8.816463e-02	ci left: 8.597060e-02	ci right 9.394908e-02	k: 1798	n:20000
KS ci ratio: 1.151445e-02	ci left: 8.478641e-01	ci right 8.577331e-01	k: 17057	n:20000
CHST5   20000 perm   4 sec   (5179 perm/sec)   p_kst 8.528500e-01   p_cons 8.990000e-02   p_joint 2.355000e-01

Outputting figure to mutsig2_images.part000000000038/CHST5.3_1240_20000_0.85285_0.0899_0.2355.png
                gene_name: CHST5
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 78 percent done.
CHST8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.666090e-02	ci left: 3.144328e-01	ci right 3.328701e-01	k: 3236	n:10000
Cons ci ratio: 1.256428e-01	ci left: 8.310086e-02	ci right 9.434008e-02	k: 886	n:10000
KS ci ratio: 2.490568e-02	ci left: 7.034174e-01	ci right 7.212588e-01	k: 7124	n:10000
CHST8   10000 perm   2 sec   (6592 perm/sec)   p_kst 7.124000e-01   p_cons 8.860000e-02   p_joint 3.236000e-01

Joint ci ratio: 4.622771e-02	ci left: 2.582976e-01	ci right 2.705710e-01	k: 5288	n:20000
Cons ci ratio: 8.797668e-02	ci left: 8.631360e-02	ci right 9.430597e-02	k: 1805	n:20000
KS ci ratio: 1.763502e-02	ci left: 7.055177e-01	ci right 7.181206e-01	k: 14237	n:20000
CHST8   20000 perm   3 sec   (5821 perm/sec)   p_kst 7.118500e-01   p_cons 9.025000e-02   p_joint 2.644000e-01

Outputting figure to mutsig2_images.part000000000038/CHST8.3_1287_20000_0.71185_0.09025_0.2644.png
                gene_name: CHST8
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 80 percent done.
CIB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.671391e-02	ci left: 8.389786e-01	ci right 8.532191e-01	k: 8462	n:10000
Cons ci ratio: 3.360775e-02	ci left: 5.665439e-01	ci right 5.860116e-01	k: 5763	n:10000
KS ci ratio: 1.861556e-02	ci left: 8.082638e-01	ci right 8.235517e-01	k: 8160	n:10000
CIB3   10000 perm   2 sec   (6230 perm/sec)   p_kst 8.160000e-01   p_cons 5.763000e-01   p_joint 8.462000e-01

Outputting figure to mutsig2_images.part000000000038/CIB3.3_588_10000_0.816_0.5763_0.8462.png
                gene_name: CIB3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 82 percent done.
CKAP2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.856686e-02	ci left: 6.436774e-01	ci right 6.624334e-01	k: 6531	n:10000
Cons ci ratio: 2.029037e-02	ci left: 7.805653e-01	ci right 7.966662e-01	k: 7887	n:10000
KS ci ratio: 4.419792e-02	ci left: 4.304391e-01	ci right 4.499957e-01	k: 4402	n:10000
CKAP2L   10000 perm   2 sec   (5663 perm/sec)   p_kst 4.402000e-01   p_cons 7.887000e-01   p_joint 6.531000e-01

Outputting figure to mutsig2_images.part000000000038/CKAP2L.3_2274_10000_0.4402_0.7887_0.6531.png
                gene_name: CKAP2L
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 84 percent done.
CKAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.173722e-02	ci left: 5.943354e-01	ci right 6.136040e-01	k: 6040	n:10000
KS ci ratio: 1.995523e-02	ci left: 7.861410e-01	ci right 8.020873e-01	k: 7942	n:10000
CKAP5   10000 perm   2 sec   (4290 perm/sec)   p_kst 7.942000e-01   p_cons 6.040000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CKAP5.3_6271_10000_0.7942_0.604_1.png
                gene_name: CKAP5
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
CLC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.509927e-02	ci left: 2.573588e-01	ci right 2.747777e-01	k: 2660	n:10000
Cons ci ratio: 4.547591e-02	ci left: 4.164802e-01	ci right 4.359628e-01	k: 4262	n:10000
KS ci ratio: 7.272974e-02	ci left: 2.168465e-01	ci right 2.333139e-01	k: 2250	n:10000
CLC   10000 perm   2 sec   (6052 perm/sec)   p_kst 2.250000e-01   p_cons 4.262000e-01   p_joint 2.660000e-01

Outputting figure to mutsig2_images.part000000000038/CLC.3_445_10000_0.225_0.4262_0.266.png
                gene_name: CLC
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 88 percent done.
CHRNA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.712391e-03	ci left: 9.681537e-01	ci right 9.747678e-01	k: 9716	n:10000
Cons ci ratio: 1.562625e-01	ci left: 5.455711e-02	ci right 6.390171e-02	k: 591	n:10000
KS ci ratio: 6.051180e-02	ci left: 2.865679e-01	ci right 3.045513e-01	k: 2955	n:10000
CHRNA5   10000 perm   2 sec   (5963 perm/sec)   p_kst 2.955000e-01   p_cons 5.910000e-02   p_joint 9.716000e-01

Joint ci ratio: 3.187162e-02	ci left: 4.237231e-01	ci right 4.374971e-01	k: 8612	n:20000
Cons ci ratio: 1.122713e-01	ci left: 5.421584e-02	ci right 6.071357e-02	k: 1148	n:20000
KS ci ratio: 4.273716e-02	ci left: 2.897282e-01	ci right 3.024312e-01	k: 5921	n:20000
CHRNA5   20000 perm   4 sec   (5404 perm/sec)   p_kst 2.960500e-01   p_cons 5.740000e-02   p_joint 4.306000e-01

Joint ci ratio: 2.592326e-02	ci left: 4.268840e-01	ci right 4.381291e-01	k: 12975	n:30000
Cons ci ratio: 9.294970e-02	ci left: 5.335946e-02	ci right 5.859361e-02	k: 1678	n:30000
KS ci ratio: 3.481404e-02	ci left: 2.918657e-01	ci right 3.022403e-01	k: 8911	n:30000
CHRNA5   30000 perm   6 sec   (5036 perm/sec)   p_kst 2.970333e-01   p_cons 5.593333e-02   p_joint 4.325000e-01

Outputting figure to mutsig2_images.part000000000038/CHRNA5.2_1431_30000_0.29703_0.055933_0.4325.png
                gene_name: CHRNA5
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 90 percent done.
CHRNA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.907922e-02	ci left: 6.355301e-01	ci right 6.543853e-01	k: 6450	n:10000
Cons ci ratio: 2.688917e-02	ci left: 6.707558e-01	ci right 6.891393e-01	k: 6800	n:10000
KS ci ratio: 4.282578e-02	ci left: 4.460026e-01	ci right 4.656231e-01	k: 4558	n:10000
CHRNA6   10000 perm   2 sec   (6265 perm/sec)   p_kst 4.558000e-01   p_cons 6.800000e-01   p_joint 6.450000e-01

Outputting figure to mutsig2_images.part000000000038/CHRNA6.2_1509_10000_0.4558_0.68_0.645.png
                gene_name: CHRNA6
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 92 percent done.
CHRNA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.807679e-02	ci left: 2.404497e-01	ci right 2.574968e-01	k: 2489	n:10000
Cons ci ratio: 1.360009e-01	ci left: 7.146123e-02	ci right 8.198693e-02	k: 766	n:10000
KS ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
CHRNA9   10000 perm   2 sec   (5925 perm/sec)   p_kst 4.450000e-02   p_cons 7.660000e-02   p_joint 2.489000e-01

Joint ci ratio: 4.863866e-02	ci left: 2.391510e-01	ci right 2.511232e-01	k: 4902	n:20000
Cons ci ratio: 9.523102e-02	ci left: 7.436884e-02	ci right 8.185436e-02	k: 1561	n:20000
KS ci ratio: 1.312415e-01	ci left: 3.989122e-02	ci right 4.554270e-02	k: 853	n:20000
CHRNA9   20000 perm   4 sec   (5100 perm/sec)   p_kst 4.265000e-02   p_cons 7.805000e-02   p_joint 2.451000e-01

Joint ci ratio: 3.416387e-02	ci left: 2.997593e-01	ci right 3.102118e-01	k: 9149	n:30000
Cons ci ratio: 7.768444e-02	ci left: 7.518613e-02	ci right 8.129584e-02	k: 2346	n:30000
KS ci ratio: 1.094088e-01	ci left: 3.878406e-02	ci right 4.330537e-02	k: 1230	n:30000
CHRNA9   30000 perm   6 sec   (4912 perm/sec)   p_kst 4.100000e-02   p_cons 7.820000e-02   p_joint 3.049667e-01

Joint ci ratio: 2.334168e-02	ci left: 4.086679e-01	ci right 4.183447e-01	k: 16540	n:40000
Cons ci ratio: 6.722256e-02	ci left: 7.571014e-02	ci right 8.100127e-02	k: 3133	n:40000
KS ci ratio: 9.509402e-02	ci left: 3.880895e-02	ci right 4.270808e-02	k: 1629	n:40000
CHRNA9   40000 perm   8 sec   (4751 perm/sec)   p_kst 4.072500e-02   p_cons 7.832500e-02   p_joint 4.135000e-01

Outputting figure to mutsig2_images.part000000000038/CHRNA9.2_1460_40000_0.040725_0.078325_0.4135.png
                gene_name: CHRNA9
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 94 percent done.
CHST13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.056010e-01	ci left: 1.146691e-01	ci right 1.275526e-01	k: 1210	n:10000
Cons ci ratio: 4.607595e-02	ci left: 4.101016e-01	ci right 4.295451e-01	k: 4198	n:10000
KS ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
CHST13   10000 perm   2 sec   (5795 perm/sec)   p_kst 2.320000e-02   p_cons 4.198000e-01   p_joint 1.210000e-01

Joint ci ratio: 1.145086e-01	ci left: 5.217214e-02	ci right 5.855790e-02	k: 1106	n:20000
Cons ci ratio: 3.221187e-02	ci left: 4.185343e-01	ci right 4.322874e-01	k: 8508	n:20000
KS ci ratio: 1.792614e-01	ci left: 2.125382e-02	ci right 2.548631e-02	k: 466	n:20000
CHST13   20000 perm   4 sec   (5494 perm/sec)   p_kst 2.330000e-02   p_cons 4.254000e-01   p_joint 5.530000e-02

Joint ci ratio: 6.053500e-02	ci left: 1.189087e-01	ci right 1.263646e-01	k: 3678	n:30000
Cons ci ratio: 2.611070e-02	ci left: 4.233566e-01	ci right 4.345905e-01	k: 12869	n:30000
KS ci ratio: 1.450478e-01	ci left: 2.204044e-02	ci right 2.551929e-02	k: 712	n:30000
CHST13   30000 perm   6 sec   (5278 perm/sec)   p_kst 2.373333e-02   p_cons 4.289667e-01   p_joint 1.226000e-01

Joint ci ratio: 5.693540e-02	ci left: 1.029254e-01	ci right 1.089820e-01	k: 4237	n:40000
Cons ci ratio: 2.314669e-02	ci left: 4.127358e-01	ci right 4.224262e-01	k: 16703	n:40000
KS ci ratio: 1.291134e-01	ci left: 2.106890e-02	ci right 2.400098e-02	k: 900	n:40000
CHST13   40000 perm   8 sec   (5145 perm/sec)   p_kst 2.250000e-02   p_cons 4.175750e-01   p_joint 1.059250e-01

Joint ci ratio: 5.044928e-02	ci left: 1.050154e-01	ci right 1.104703e-01	k: 5386	n:50000
Cons ci ratio: 2.080892e-02	ci left: 4.107761e-01	ci right 4.194338e-01	k: 20755	n:50000
KS ci ratio: 1.149229e-01	ci left: 2.143166e-02	ci right 2.406415e-02	k: 1136	n:50000
CHST13   50000 perm   10 sec   (5014 perm/sec)   p_kst 2.272000e-02   p_cons 4.151000e-01   p_joint 1.077200e-01

Joint ci ratio: 4.611132e-02	ci left: 1.050157e-01	ci right 1.099890e-01	k: 6449	n:60000
Cons ci ratio: 1.906918e-02	ci left: 4.092892e-01	ci right 4.171858e-01	k: 24794	n:60000
KS ci ratio: 1.049651e-01	ci left: 2.152301e-02	ci right 2.392347e-02	k: 1362	n:60000
CHST13   60000 perm   12 sec   (4917 perm/sec)   p_kst 2.270000e-02   p_cons 4.132333e-01   p_joint 1.074833e-01

Joint ci ratio: 4.313531e-02	ci left: 1.032477e-01	ci right 1.078136e-01	k: 7386	n:70000
Cons ci ratio: 1.763306e-02	ci left: 4.101765e-01	ci right 4.174878e-01	k: 28968	n:70000
KS ci ratio: 9.743523e-02	ci left: 2.149773e-02	ci right 2.371352e-02	k: 1581	n:70000
CHST13   70000 perm   15 sec   (4802 perm/sec)   p_kst 2.258571e-02   p_cons 4.138286e-01   p_joint 1.055143e-01

Outputting figure to mutsig2_images.part000000000038/CHST13.2_1038_70000_0.022586_0.41383_0.10551.png
                gene_name: CHST13
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 96 percent done.
CIB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.611385e-02	ci left: 6.834513e-01	ci right 7.016364e-01	k: 6926	n:10000
KS ci ratio: 1.516905e-02	ci left: 8.630465e-01	ci right 8.763374e-01	k: 8698	n:10000
CIB2   10000 perm   1 sec   (6694 perm/sec)   p_kst 8.698000e-01   p_cons 6.926000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000038/CIB2.2_588_10000_0.8698_0.6926_1.png
                gene_name: CIB2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
CILP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.925109e-02	ci left: 7.978066e-01	ci right 8.134149e-01	k: 8057	n:10000
Cons ci ratio: 6.348859e-02	ci left: 2.671559e-01	ci right 2.847748e-01	k: 2759	n:10000
KS ci ratio: 2.852276e-02	ci left: 6.443816e-01	ci right 6.631288e-01	k: 6538	n:10000
CILP2   10000 perm   2 sec   (5493 perm/sec)   p_kst 6.538000e-01   p_cons 2.759000e-01   p_joint 8.057000e-01

Outputting figure to mutsig2_images.part000000000038/CILP2.2_3503_10000_0.6538_0.2759_0.8057.png
                gene_name: CILP2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000038
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 38 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 9893887: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000039> was used as the working directory.
Started at Sat Oct  6 00:03:08 2012
Results reported at Sat Oct  6 00:09:16 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000039.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000039.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 39  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000039.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    353.26 sec.
    Max Memory :      3578 MB
    Max Swap   :      5917 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
39
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 39
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 39: processing genes 3427 - 3516
Calculating significance of each gene.
Using projection method.
3427	CLDN12	4.672185e-01
3428	CLDN14	1
3429	CLDN15	6.559731e-01
3430	CLDN16	1.146353e-02
3431	CLDN17	7.681402e-03
3432	CLDN18	4.822539e-01
3433	CLDN19	5.586789e-01
3434	CLDN2	5.650408e-01
3435	CLDN20	1
3436	CLDN22	1
3437	CLDN23	1
3438	CLDN25	3.603035e-01
3439	CLDN3	1
3440	CLDN4	1
3441	CLDN5	1
3442	CLDN6	2.632057e-01
3443	CLDN7	3.914408e-01
3444	CLDN8	1.161798e-02
3445	CLDN9	6.072350e-01
3446	CLDND1	3.584010e-01
3447	CLDND2	3.696566e-01
3448	CLEC10A	3.961694e-01
3449	CLEC11A	1
3450	CLEC12A	1.947546e-01
3451	CLEC12B	5.726728e-01
3452	CLEC14A	8.123910e-01
3453	CLEC16A	9.415538e-01
3454	CLEC17A	1
3455	CLEC18A	1
3456	CLEC18B	5.457683e-01
3457	CLEC18C	3.134120e-03
3458	CLEC1A	7.773871e-02
3459	CLEC1B	6.721167e-01
3460	CLEC2B	3.840555e-02
3461	CLEC2D	3.698900e-01
3462	CLEC2L	1
3463	CLEC3A	4.416098e-01
3464	CLEC3B	1
3465	CLEC4A	2.552723e-01
3466	CLEC4C	3.194503e-03
3467	CLEC4D	1.491922e-02
3468	CLEC4E	3.630827e-01
3469	CLEC4F	1.807127e-01
3470	CLEC4G	1
3471	CLEC4M	8.744103e-02
3472	CLEC5A	2.014483e-02
3473	CLEC6A	2.501977e-01
3474	CLEC7A	9.001394e-02
3475	CLEC9A	5.932558e-01
3476	CLECL1	2.003739e-03
3477	CLGN	6.854214e-01
3478	CLIC1	1
3479	CLIC2	4.056444e-01
3480	CLIC3	1
3481	CLIC4	7.345701e-01
3482	CLIC5	5.520523e-01
3483	CLIC6	3.001079e-01
3484	CLINT1	6.512120e-01
3485	CLIP1	2.837105e-01
3486	CLIP2	5.469923e-01
3487	CLIP3	7.275527e-01
3488	CLIP4	8.825326e-02
3489	CLK1	9.004301e-02
3490	CLK2	1
3491	CLK3	5.256196e-01
3492	CLK4	5.664428e-01
3493	CLLU1	1
3494	CLLU1OS	1
3495	CLMN	6.771076e-01
3496	CLN3	7.880388e-01
3497	CLN5	3.042973e-01
3498	CLN6	5.034218e-01
3499	CLN8	1.455611e-01
3500	CLNK	7.094762e-01
3501	CLNS1A	5.027744e-01
3502	CLOCK	1.913384e-01
3503	CLP1	2.757713e-01
3504	CLPB	7.779533e-01
3505	CLPP	2.936601e-01
3506	CLPS	1.121665e-01
3507	CLPTM1	6.272024e-01
3508	CLPTM1L	8.865327e-01
3509	CLPX	8.879938e-01
3510	CLRN1	6.281551e-01
3511	CLRN2	4.568111e-01
3512	CLRN3	5.012132e-01
3513	CLSPN	5.118325e-01
3514	CLSTN1	4.364810e-01
3515	CLSTN2	5.141467e-02
3516	CLSTN3	2.753034e-01
Done

Running MutSig 2:
Scatter job 39: processing genes 3427 - 3516
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CLIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.695073e-02	ci left: 8.352108e-01	ci right 8.495891e-01	k: 8425	n:10000
Cons ci ratio: 2.261365e-02	ci left: 7.416944e-01	ci right 7.587596e-01	k: 7503	n:10000
KS ci ratio: 2.821473e-02	ci left: 6.493117e-01	ci right 6.679958e-01	k: 6587	n:10000
CLIP1   10000 perm   2 sec   (4915 perm/sec)   p_kst 6.587000e-01   p_cons 7.503000e-01   p_joint 8.425000e-01

Outputting figure to mutsig2_images.part000000000039/CLIP1.11_4380_10000_0.6587_0.7503_0.8425.png
                gene_name: CLIP1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 2 percent done.
CLOCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.909827e-02	ci left: 6.352285e-01	ci right 6.540872e-01	k: 6447	n:10000
Cons ci ratio: 5.530440e-02	ci left: 3.250533e-01	ci right 3.436433e-01	k: 3343	n:10000
KS ci ratio: 2.201626e-02	ci left: 7.517066e-01	ci right 7.685416e-01	k: 7602	n:10000
CLOCK   10000 perm   2 sec   (5752 perm/sec)   p_kst 7.602000e-01   p_cons 3.343000e-01   p_joint 6.447000e-01

Outputting figure to mutsig2_images.part000000000039/CLOCK.8_2621_10000_0.7602_0.3343_0.6447.png
                gene_name: CLOCK
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 4 percent done.
CLSTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.783012e-02	ci left: 8.210683e-01	ci right 8.359398e-01	k: 8286	n:10000
Cons ci ratio: 4.495000e-02	ci left: 4.221625e-01	ci right 4.416772e-01	k: 4319	n:10000
KS ci ratio: 2.236025e-02	ci left: 7.459413e-01	ci right 7.629103e-01	k: 7545	n:10000
CLSTN2   10000 perm   2 sec   (5899 perm/sec)   p_kst 7.545000e-01   p_cons 4.319000e-01   p_joint 8.286000e-01

Outputting figure to mutsig2_images.part000000000039/CLSTN2.8_2936_10000_0.7545_0.4319_0.8286.png
                gene_name: CLSTN2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 6 percent done.
CLSTN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.444600e-02	ci left: 3.320042e-01	ci right 3.506883e-01	k: 3413	n:10000
Cons ci ratio: 1.051078e-01	ci left: 1.156461e-01	ci right 1.285750e-01	k: 1220	n:10000
KS ci ratio: 9.178519e-03	ci left: 9.435701e-01	ci right 9.523667e-01	k: 9481	n:10000
CLSTN3   10000 perm   2 sec   (5872 perm/sec)   p_kst 9.481000e-01   p_cons 1.220000e-01   p_joint 3.413000e-01

Joint ci ratio: 3.986037e-02	ci left: 3.194048e-01	ci right 3.324458e-01	k: 6518	n:20000
Cons ci ratio: 7.413374e-02	ci left: 1.180846e-01	ci right 1.272254e-01	k: 2452	n:20000
KS ci ratio: 6.637847e-03	ci left: 9.425718e-01	ci right 9.488979e-01	k: 18916	n:20000
CLSTN3   20000 perm   4 sec   (5319 perm/sec)   p_kst 9.458000e-01   p_cons 1.226000e-01   p_joint 3.259000e-01

Outputting figure to mutsig2_images.part000000000039/CLSTN3.8_2943_20000_0.9458_0.1226_0.3259.png
                gene_name: CLSTN3
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 7 percent done.
CLIP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.575267e-02	ci left: 6.893987e-01	ci right 7.074856e-01	k: 6985	n:10000
Cons ci ratio: 9.008395e-02	ci left: 1.519811e-01	ci right 1.664180e-01	k: 1591	n:10000
KS ci ratio: 1.947207e-02	ci left: 7.941537e-01	ci right 8.098700e-01	k: 8021	n:10000
CLIP4   10000 perm   2 sec   (6171 perm/sec)   p_kst 8.021000e-01   p_cons 1.591000e-01   p_joint 6.985000e-01

Outputting figure to mutsig2_images.part000000000039/CLIP4.7_2178_10000_0.8021_0.1591_0.6985.png
                gene_name: CLIP4
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 9 percent done.
CLK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.358092e-01	ci left: 7.165494e-02	ci right 8.219310e-02	k: 768	n:10000
Cons ci ratio: 6.108332e-02	ci left: 2.827037e-01	ci right 3.006178e-01	k: 2916	n:10000
KS ci ratio: 1.492827e-01	ci left: 5.966639e-02	ci right 6.938918e-02	k: 644	n:10000
CLK1   10000 perm   2 sec   (5844 perm/sec)   p_kst 6.440000e-02   p_cons 2.916000e-01   p_joint 7.680000e-02

Joint ci ratio: 7.234636e-02	ci left: 1.233499e-01	ci right 1.326585e-01	k: 2559	n:20000
Cons ci ratio: 4.316129e-02	ci left: 2.856545e-01	ci right 2.983061e-01	k: 5839	n:20000
KS ci ratio: 1.057364e-01	ci left: 6.089032e-02	ci right 6.773701e-02	k: 1285	n:20000
CLK1   20000 perm   4 sec   (5299 perm/sec)   p_kst 6.425000e-02   p_cons 2.919500e-01   p_joint 1.279500e-01

Joint ci ratio: 7.515970e-02	ci left: 8.000026e-02	ci right 8.628075e-02	k: 2493	n:30000
Cons ci ratio: 3.665544e-02	ci left: 2.709137e-01	ci right 2.810631e-01	k: 8279	n:30000
KS ci ratio: 8.635796e-02	ci left: 6.148468e-02	ci right 6.706674e-02	k: 1927	n:30000
CLK1   30000 perm   6 sec   (5089 perm/sec)   p_kst 6.423333e-02   p_cons 2.759667e-01   p_joint 8.310000e-02

Outputting figure to mutsig2_images.part000000000039/CLK1.6_1633_30000_0.064233_0.27597_0.0831.png
                gene_name: CLK1
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.086 

Current progress: 11 percent done.
CLMN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.768586e-02	ci left: 3.066941e-01	ci right 3.250132e-01	k: 3158	n:10000
Cons ci ratio: 8.573437e-02	ci left: 1.654360e-01	ci right 1.803551e-01	k: 1728	n:10000
KS ci ratio: 4.453122e-02	ci left: 4.267492e-01	ci right 4.462878e-01	k: 4365	n:10000
CLMN   10000 perm   2 sec   (5367 perm/sec)   p_kst 4.365000e-01   p_cons 1.728000e-01   p_joint 3.158000e-01

Outputting figure to mutsig2_images.part000000000039/CLMN.6_3061_10000_0.4365_0.1728_0.3158.png
                gene_name: CLMN
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 13 percent done.
CLSPN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.374355e-02	ci left: 4.355261e-01	ci right 4.551058e-01	k: 4453	n:10000
Cons ci ratio: 1.147477e-01	ci left: 9.847268e-02	ci right 1.105588e-01	k: 1044	n:10000
KS ci ratio: 1.320792e-02	ci left: 8.920044e-01	ci right 9.039627e-01	k: 8981	n:10000
CLSPN   10000 perm   2 sec   (5554 perm/sec)   p_kst 8.981000e-01   p_cons 1.044000e-01   p_joint 4.453000e-01

Joint ci ratio: 3.116991e-02	ci left: 4.346519e-01	ci right 4.484651e-01	k: 8831	n:20000
Cons ci ratio: 7.616503e-02	ci left: 1.124780e-01	ci right 1.214337e-01	k: 2338	n:20000
KS ci ratio: 9.358467e-03	ci left: 8.934171e-01	ci right 9.018669e-01	k: 17954	n:20000
CLSPN   20000 perm   4 sec   (5019 perm/sec)   p_kst 8.977000e-01   p_cons 1.169000e-01   p_joint 4.415500e-01

Outputting figure to mutsig2_images.part000000000039/CLSPN.6_4120_20000_0.8977_0.1169_0.44155.png
                gene_name: CLSPN
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 15 percent done.
CLSTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.109326e-01	ci left: 1.048095e-01	ci right 1.172181e-01	k: 1109	n:10000
Cons ci ratio: 1.505339e-01	ci left: 5.870163e-02	ci right 6.835455e-02	k: 634	n:10000
KS ci ratio: 1.204951e-01	ci left: 8.990526e-02	ci right 1.015315e-01	k: 956	n:10000
CLSTN1   10000 perm   2 sec   (5615 perm/sec)   p_kst 9.560000e-02   p_cons 6.340000e-02   p_joint 1.109000e-01

Joint ci ratio: 1.215250e-01	ci left: 4.643741e-02	ci right 5.249443e-02	k: 988	n:20000
Cons ci ratio: 1.085134e-01	ci left: 5.791700e-02	ci right 6.461125e-02	k: 1224	n:20000
KS ci ratio: 8.287816e-02	ci left: 9.641542e-02	ci right 1.048011e-01	k: 2011	n:20000
CLSTN1   20000 perm   4 sec   (5080 perm/sec)   p_kst 1.005500e-01   p_cons 6.120000e-02   p_joint 4.940000e-02

Joint ci ratio: 1.107286e-01	ci left: 3.787542e-02	ci right 4.234753e-02	k: 1202	n:30000
Cons ci ratio: 8.755303e-02	ci left: 5.988461e-02	ci right 6.540046e-02	k: 1878	n:30000
KS ci ratio: 6.943604e-02	ci left: 9.268901e-02	ci right 9.938945e-02	k: 2880	n:30000
CLSTN1   30000 perm   6 sec   (4873 perm/sec)   p_kst 9.600000e-02   p_cons 6.260000e-02   p_joint 4.006667e-02

Joint ci ratio: 8.885366e-02	ci left: 4.433463e-02	ci right 4.848154e-02	k: 1855	n:40000
Cons ci ratio: 7.536449e-02	ci left: 6.095755e-02	ci right 6.575608e-02	k: 2533	n:40000
KS ci ratio: 6.016245e-02	ci left: 9.305597e-02	ci right 9.885284e-02	k: 3837	n:40000
CLSTN1   40000 perm   8 sec   (4757 perm/sec)   p_kst 9.592500e-02   p_cons 6.332500e-02   p_joint 4.637500e-02

Outputting figure to mutsig2_images.part000000000039/CLSTN1.6_3022_40000_0.095925_0.063325_0.046375.png
                gene_name: CLSTN1
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.048 

Current progress: 17 percent done.
CLDN16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.879412e-02	ci left: 6.400560e-01	ci right 6.588569e-01	k: 6495	n:10000
Cons ci ratio: 6.356810e-02	ci left: 2.666610e-01	ci right 2.842700e-01	k: 2754	n:10000
KS ci ratio: 1.519581e-02	ci left: 8.626380e-01	ci right 8.759461e-01	k: 8694	n:10000
CLDN16   10000 perm   2 sec   (6602 perm/sec)   p_kst 8.694000e-01   p_cons 2.754000e-01   p_joint 6.495000e-01

Outputting figure to mutsig2_images.part000000000039/CLDN16.5_938_10000_0.8694_0.2754_0.6495.png
                gene_name: CLDN16
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 19 percent done.
CLDN17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.768831e-03	ci left: 9.368238e-01	ci right 9.461169e-01	k: 9416	n:10000
Cons ci ratio: 7.262343e-03	ci left: 9.632049e-01	ci right 9.703198e-01	k: 9669	n:10000
KS ci ratio: 1.550859e-02	ci left: 8.578398e-01	ci right 8.713470e-01	k: 8647	n:10000
CLDN17   10000 perm   2 sec   (5874 perm/sec)   p_kst 8.647000e-01   p_cons 9.669000e-01   p_joint 9.416000e-01

Outputting figure to mutsig2_images.part000000000039/CLDN17.5_679_10000_0.8647_0.9669_0.9416.png
                gene_name: CLDN17
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 20 percent done.
CLDN8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.750272e-02	ci left: 6.607862e-01	ci right 6.793147e-01	k: 6701	n:10000
Cons ci ratio: 1.715456e-02	ci left: 8.319533e-01	ci right 8.464485e-01	k: 8393	n:10000
KS ci ratio: 3.438464e-02	ci left: 5.553158e-01	ci right 5.748463e-01	k: 5651	n:10000
CLDN8   10000 perm   1 sec   (6929 perm/sec)   p_kst 5.651000e-01   p_cons 8.393000e-01   p_joint 6.701000e-01

Outputting figure to mutsig2_images.part000000000039/CLDN8.5_682_10000_0.5651_0.8393_0.6701.png
                gene_name: CLDN8
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 22 percent done.
CLEC16A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.393752e-01	ci left: 6.816984e-02	ci right 7.848038e-02	k: 732	n:10000
Cons ci ratio: 2.385065e-01	ci left: 2.315796e-02	ci right 2.952203e-02	k: 262	n:10000
KS ci ratio: 5.803467e-02	ci left: 3.041153e-01	ci right 3.223936e-01	k: 3132	n:10000
CLEC16A   10000 perm   2 sec   (6105 perm/sec)   p_kst 3.132000e-01   p_cons 2.620000e-02   p_joint 7.320000e-02

Joint ci ratio: 1.398453e-01	ci left: 3.515098e-02	ci right 4.048447e-02	k: 755	n:20000
Cons ci ratio: 1.704933e-01	ci left: 2.355113e-02	ci right 2.798821e-02	k: 514	n:20000
KS ci ratio: 4.052271e-02	ci left: 3.122438e-01	ci right 3.252089e-01	k: 6374	n:20000
CLEC16A   20000 perm   4 sec   (5481 perm/sec)   p_kst 3.187000e-01   p_cons 2.570000e-02   p_joint 3.775000e-02

Joint ci ratio: 9.719201e-02	ci left: 4.892819e-02	ci right 5.395913e-02	k: 1542	n:30000
Cons ci ratio: 1.400950e-01	ci left: 2.364901e-02	ci right 2.724369e-02	k: 762	n:30000
KS ci ratio: 3.295382e-02	ci left: 3.151870e-01	ci right 3.257811e-01	k: 9614	n:30000
CLEC16A   30000 perm   6 sec   (5260 perm/sec)   p_kst 3.204667e-01   p_cons 2.540000e-02   p_joint 5.140000e-02

Joint ci ratio: 6.945997e-02	ci left: 7.118259e-02	ci right 7.632949e-02	k: 2949	n:40000
Cons ci ratio: 1.228422e-01	ci left: 2.329805e-02	ci right 2.637146e-02	k: 992	n:40000
KS ci ratio: 2.861437e-02	ci left: 3.147569e-01	ci right 3.239193e-01	k: 12773	n:40000
CLEC16A   40000 perm   8 sec   (5104 perm/sec)   p_kst 3.193250e-01   p_cons 2.480000e-02   p_joint 7.372500e-02

Joint ci ratio: 6.317356e-02	ci left: 6.923678e-02	ci right 7.377312e-02	k: 3574	n:50000
Cons ci ratio: 1.082851e-01	ci left: 2.415534e-02	ci right 2.694012e-02	k: 1276	n:50000
KS ci ratio: 2.557876e-02	ci left: 3.154932e-01	ci right 3.236877e-01	k: 15979	n:50000
CLEC16A   50000 perm   10 sec   (4972 perm/sec)   p_kst 3.195800e-01   p_cons 2.552000e-02   p_joint 7.148000e-02

Joint ci ratio: 6.580893e-02	ci left: 5.399296e-02	ci right 5.768348e-02	k: 3349	n:60000
Cons ci ratio: 9.637476e-02	ci left: 2.553864e-02	ci right 2.814074e-02	k: 1609	n:60000
KS ci ratio: 2.334653e-02	ci left: 3.159190e-01	ci right 3.233984e-01	k: 19179	n:60000
CLEC16A   60000 perm   12 sec   (4842 perm/sec)   p_kst 3.196500e-01   p_cons 2.681667e-02   p_joint 5.581667e-02

Outputting figure to mutsig2_images.part000000000039/CLEC16A.5_3254_60000_0.31965_0.026817_0.055817.png
                gene_name: CLEC16A
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.058 

Current progress: 24 percent done.
CLEC18C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.254871e-02	ci left: 1.763499e-01	ci right 1.916346e-01	k: 1839	n:10000
Cons ci ratio: 4.081055e-02	ci left: 4.699653e-01	ci right 4.896465e-01	k: 4798	n:10000
KS ci ratio: 8.271402e-02	ci left: 1.757597e-01	ci right 1.910252e-01	k: 1833	n:10000
CLEC18C   10000 perm   2 sec   (6587 perm/sec)   p_kst 1.833000e-01   p_cons 4.798000e-01   p_joint 1.839000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC18C.5_1389_10000_0.1833_0.4798_0.1839.png
                gene_name: CLEC18C
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 26 percent done.
CLEC4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.849801e-02	ci left: 2.381767e-01	ci right 2.551711e-01	k: 2466	n:10000
Cons ci ratio: 1.526929e-02	ci left: 8.615148e-01	ci right 8.748699e-01	k: 8683	n:10000
KS ci ratio: 9.703224e-02	ci left: 1.334506e-01	ci right 1.471597e-01	k: 1402	n:10000
CLEC4C   10000 perm   2 sec   (6404 perm/sec)   p_kst 1.402000e-01   p_cons 8.683000e-01   p_joint 2.466000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC4C.5_666_10000_0.1402_0.8683_0.2466.png
                gene_name: CLEC4C
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 28 percent done.
CLEC4F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.759650e-02	ci left: 5.109538e-01	ci right 5.306341e-01	k: 5208	n:10000
Cons ci ratio: 5.663503e-02	ci left: 3.146312e-01	ci right 3.330715e-01	k: 3238	n:10000
KS ci ratio: 4.648497e-02	ci left: 4.058169e-01	ci right 4.252323e-01	k: 4155	n:10000
CLEC4F   10000 perm   2 sec   (6009 perm/sec)   p_kst 4.155000e-01   p_cons 3.238000e-01   p_joint 5.208000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC4F.5_1798_10000_0.4155_0.3238_0.5208.png
                gene_name: CLEC4F
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 30 percent done.
CLIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.569683e-01	ci left: 5.407563e-02	ci right 6.338351e-02	k: 586	n:10000
Cons ci ratio: 6.868370e-03	ci left: 9.667828e-01	ci right 9.735397e-01	k: 9703	n:10000
KS ci ratio: 2.309509e-01	ci left: 2.476030e-02	ci right 3.131851e-02	k: 279	n:10000
CLIP2   10000 perm   2 sec   (5504 perm/sec)   p_kst 2.790000e-02   p_cons 9.703000e-01   p_joint 5.860000e-02

Joint ci ratio: 1.094685e-01	ci left: 5.694265e-02	ci right 6.358591e-02	k: 1204	n:20000
Cons ci ratio: 5.087704e-03	ci left: 9.648967e-01	ci right 9.698662e-01	k: 19349	n:20000
KS ci ratio: 1.625657e-01	ci left: 2.594951e-02	ci right 3.058899e-02	k: 564	n:20000
CLIP2   20000 perm   4 sec   (4997 perm/sec)   p_kst 2.820000e-02   p_cons 9.674500e-01   p_joint 6.020000e-02

Joint ci ratio: 7.720370e-02	ci left: 7.607011e-02	ci right 8.221169e-02	k: 2373	n:30000
Cons ci ratio: 3.901645e-03	ci left: 9.692102e-01	ci right 9.730312e-01	k: 29135	n:30000
KS ci ratio: 1.326951e-01	ci left: 2.638812e-02	ci right 3.017064e-02	k: 847	n:30000
CLIP2   30000 perm   6 sec   (4793 perm/sec)   p_kst 2.823333e-02   p_cons 9.711667e-01   p_joint 7.910000e-02

Joint ci ratio: 7.350813e-02	ci left: 6.392994e-02	ci right 6.883324e-02	k: 2654	n:40000
Cons ci ratio: 3.329455e-03	ci left: 9.703104e-01	ci right 9.735706e-01	k: 38879	n:40000
KS ci ratio: 1.179400e-01	ci left: 2.528783e-02	ci right 2.848135e-02	k: 1074	n:40000
CLIP2   40000 perm   9 sec   (4641 perm/sec)   p_kst 2.685000e-02   p_cons 9.719750e-01   p_joint 6.635000e-02

Joint ci ratio: 6.563931e-02	ci left: 6.439040e-02	ci right 6.878008e-02	k: 3328	n:50000
Cons ci ratio: 2.980722e-03	ci left: 9.704343e-01	ci right 9.733506e-01	k: 48596	n:50000
KS ci ratio: 1.020941e-01	ci left: 2.717594e-02	ci right 3.011913e-02	k: 1431	n:50000
CLIP2   50000 perm   11 sec   (4544 perm/sec)   p_kst 2.862000e-02   p_cons 9.719200e-01   p_joint 6.656000e-02

Joint ci ratio: 6.385358e-02	ci left: 5.720976e-02	ci right 6.099970e-02	k: 3545	n:60000
Cons ci ratio: 2.717714e-03	ci left: 9.706315e-01	ci right 9.732892e-01	k: 58319	n:60000
KS ci ratio: 9.238293e-02	ci left: 2.778582e-02	ci right 3.049331e-02	k: 1747	n:60000
CLIP2   60000 perm   13 sec   (4472 perm/sec)   p_kst 2.911667e-02   p_cons 9.719833e-01   p_joint 5.908333e-02

Outputting figure to mutsig2_images.part000000000039/CLIP2.5_3205_60000_0.029117_0.97198_0.059083.png
                gene_name: CLIP2
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.061 

Current progress: 31 percent done.
CLEC1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.868023e-02	ci left: 4.967503e-01	ci right 5.164458e-01	k: 5066	n:10000
Cons ci ratio: 4.327738e-02	ci left: 4.408137e-01	ci right 4.604151e-01	k: 4506	n:10000
KS ci ratio: 4.471269e-02	ci left: 4.247549e-01	ci right 4.442833e-01	k: 4345	n:10000
CLEC1A   10000 perm   1 sec   (7152 perm/sec)   p_kst 4.345000e-01   p_cons 4.506000e-01   p_joint 5.066000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC1A.4_867_10000_0.4345_0.4506_0.5066.png
                gene_name: CLEC1A
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 33 percent done.
CLEC9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.597292e-02	ci left: 6.857695e-01	ci right 7.039168e-01	k: 6949	n:10000
KS ci ratio: 9.372405e-03	ci left: 9.413886e-01	ci right 9.503494e-01	k: 9460	n:10000
CLEC9A   10000 perm   1 sec   (6913 perm/sec)   p_kst 9.460000e-01   p_cons 6.949000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLEC9A.4_750_10000_0.946_0.6949_1.png
                gene_name: CLEC9A
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
CLECL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.194324e-02	ci left: 5.912235e-01	ci right 6.105177e-01	k: 6009	n:10000
Cons ci ratio: 3.310124e-02	ci left: 5.739652e-01	ci right 5.933860e-01	k: 5837	n:10000
KS ci ratio: 6.058452e-02	ci left: 2.860725e-01	ci right 3.040471e-01	k: 2950	n:10000
CLECL1   10000 perm   1 sec   (7084 perm/sec)   p_kst 2.950000e-01   p_cons 5.837000e-01   p_joint 6.009000e-01

Outputting figure to mutsig2_images.part000000000039/CLECL1.4_512_10000_0.295_0.5837_0.6009.png
                gene_name: CLECL1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 37 percent done.
CLEC4D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.786866e-03	ci left: 9.828525e-01	ci right 9.876587e-01	k: 9854	n:10000
KS ci ratio: 2.150889e-02	ci left: 7.602067e-01	ci right 7.768366e-01	k: 7686	n:10000
CLEC4D   10000 perm   1 sec   (7461 perm/sec)   p_kst 7.686000e-01   p_cons 9.854000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLEC4D.3_672_10000_0.7686_0.9854_1.png
                gene_name: CLEC4D
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
CLEC4M
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.069985e-02	ci left: 1.831396e-01	ci right 1.986409e-01	k: 1908	n:10000
Cons ci ratio: 1.928796e-02	ci left: 7.971977e-01	ci right 8.128242e-01	k: 8051	n:10000
KS ci ratio: 1.232929e-01	ci left: 8.611301e-02	ci right 9.752607e-02	k: 917	n:10000
CLEC4M   10000 perm   1 sec   (6893 perm/sec)   p_kst 9.170000e-02   p_cons 8.051000e-01   p_joint 1.908000e-01

Joint ci ratio: 5.799528e-02	ci left: 1.805294e-01	ci right 1.913620e-01	k: 3718	n:20000
Cons ci ratio: 1.357749e-02	ci left: 8.009557e-01	ci right 8.119550e-01	k: 16130	n:20000
KS ci ratio: 8.713076e-02	ci left: 8.788185e-02	ci right 9.593725e-02	k: 1837	n:20000
CLEC4M   20000 perm   3 sec   (6101 perm/sec)   p_kst 9.185000e-02   p_cons 8.065000e-01   p_joint 1.859000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC4M.3_1249_20000_0.09185_0.8065_0.1859.png
                gene_name: CLEC4M
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 41 percent done.
CLEC5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.298328e-02	ci left: 8.951842e-01	ci right 9.069810e-01	k: 9012	n:10000
Cons ci ratio: 2.924448e-02	ci left: 6.329156e-01	ci right 6.518014e-01	k: 6424	n:10000
KS ci ratio: 2.282482e-02	ci left: 7.381561e-01	ci right 7.553000e-01	k: 7468	n:10000
CLEC5A   10000 perm   1 sec   (7088 perm/sec)   p_kst 7.468000e-01   p_cons 6.424000e-01   p_joint 9.012000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC5A.3_591_10000_0.7468_0.6424_0.9012.png
                gene_name: CLEC5A
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 43 percent done.
CLEC7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.723660e-02	ci left: 5.157568e-01	ci right 5.354283e-01	k: 5256	n:10000
Cons ci ratio: 7.186508e-02	ci left: 2.209917e-01	ci right 2.375663e-01	k: 2292	n:10000
KS ci ratio: 4.463999e-02	ci left: 4.255526e-01	ci right 4.450851e-01	k: 4353	n:10000
CLEC7A   10000 perm   1 sec   (6943 perm/sec)   p_kst 4.353000e-01   p_cons 2.292000e-01   p_joint 5.256000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC7A.3_804_10000_0.4353_0.2292_0.5256.png
                gene_name: CLEC7A
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 44 percent done.
CLINT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.644533e-02	ci left: 5.264667e-01	ci right 5.461122e-01	k: 5363	n:10000
Cons ci ratio: 3.804326e-02	ci left: 5.050514e-01	ci right 5.247399e-01	k: 5149	n:10000
KS ci ratio: 4.805083e-02	ci left: 3.898806e-01	ci right 4.091780e-01	k: 3995	n:10000
CLINT1   10000 perm   2 sec   (6535 perm/sec)   p_kst 3.995000e-01   p_cons 5.149000e-01   p_joint 5.363000e-01

Outputting figure to mutsig2_images.part000000000039/CLINT1.3_1926_10000_0.3995_0.5149_0.5363.png
                gene_name: CLINT1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 46 percent done.
CLIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.130572e-02	ci left: 1.808759e-01	ci right 1.963059e-01	k: 1885	n:10000
Cons ci ratio: 9.739590e-02	ci left: 1.325692e-01	ci right 1.462416e-01	k: 1393	n:10000
KS ci ratio: 7.586907e-02	ci left: 2.026437e-01	ci right 2.187252e-01	k: 2106	n:10000
CLIP3   10000 perm   1 sec   (6889 perm/sec)   p_kst 2.106000e-01   p_cons 1.393000e-01   p_joint 1.885000e-01

Outputting figure to mutsig2_images.part000000000039/CLIP3.3_1696_10000_0.2106_0.1393_0.1885.png
                gene_name: CLIP3
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 48 percent done.
CLK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.534673e-02	ci left: 1.667136e-01	ci right 1.816767e-01	k: 1741	n:10000
Cons ci ratio: 7.213041e-02	ci left: 2.197085e-01	ci right 2.362502e-01	k: 2279	n:10000
KS ci ratio: 1.339316e-01	ci left: 7.359257e-02	ci right 8.425426e-02	k: 788	n:10000
CLK3   10000 perm   1 sec   (6744 perm/sec)   p_kst 7.880000e-02   p_cons 2.279000e-01   p_joint 1.741000e-01

Joint ci ratio: 6.789724e-02	ci left: 1.379783e-01	ci right 1.477258e-01	k: 2856	n:20000
Cons ci ratio: 5.137669e-02	ci left: 2.196243e-01	ci right 2.312556e-01	k: 4508	n:20000
KS ci ratio: 9.457581e-02	ci left: 7.534699e-02	ci right 8.287592e-02	k: 1581	n:20000
CLK3   20000 perm   3 sec   (6018 perm/sec)   p_kst 7.905000e-02   p_cons 2.254000e-01   p_joint 1.428000e-01

Outputting figure to mutsig2_images.part000000000039/CLK3.3_1969_20000_0.07905_0.2254_0.1428.png
                gene_name: CLK3
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 50 percent done.
CLN8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.016252e-02	ci left: 7.826940e-01	ci right 7.987363e-01	k: 7908	n:10000
KS ci ratio: 4.093336e-02	ci left: 4.684669e-01	ci right 4.881457e-01	k: 4783	n:10000
CLN8   10000 perm   1 sec   (7360 perm/sec)   p_kst 4.783000e-01   p_cons 7.908000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLN8.3_869_10000_0.4783_0.7908_1.png
                gene_name: CLN8
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
CLNK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.388759e-02	ci left: 7.203745e-01	ci right 7.378918e-01	k: 7292	n:10000
KS ci ratio: 1.929411e-02	ci left: 7.970962e-01	ci right 8.127257e-01	k: 8050	n:10000
CLNK   10000 perm   1 sec   (7009 perm/sec)   p_kst 8.050000e-01   p_cons 7.292000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLNK.3_1359_10000_0.805_0.7292_1.png
                gene_name: CLNK
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
CLP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.896187e-02	ci left: 2.357064e-01	ci right 2.526429e-01	k: 2441	n:10000
Cons ci ratio: 2.007111e-02	ci left: 7.842146e-01	ci right 8.002148e-01	k: 7923	n:10000
KS ci ratio: 1.076335e-01	ci left: 1.107625e-01	ci right 1.234615e-01	k: 1170	n:10000
CLP1   10000 perm   1 sec   (6812 perm/sec)   p_kst 1.170000e-01   p_cons 7.923000e-01   p_joint 2.441000e-01

Joint ci ratio: 5.560159e-02	ci left: 1.934859e-01	ci right 2.046018e-01	k: 3980	n:20000
Cons ci ratio: 1.369263e-02	ci left: 7.982778e-01	ci right 8.093337e-01	k: 16077	n:20000
KS ci ratio: 7.483080e-02	ci left: 1.161170e-01	ci right 1.251936e-01	k: 2412	n:20000
CLP1   20000 perm   3 sec   (6074 perm/sec)   p_kst 1.206000e-01   p_cons 8.038500e-01   p_joint 1.990000e-01

Outputting figure to mutsig2_images.part000000000039/CLP1.3_1286_20000_0.1206_0.80385_0.199.png
                gene_name: CLP1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 56 percent done.
CLPTM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.607845e-02	ci left: 1.358015e-01	ci right 1.496073e-01	k: 1426	n:10000
Cons ci ratio: 9.187494e-02	ci left: 1.468790e-01	ci right 1.611232e-01	k: 1539	n:10000
KS ci ratio: 8.859915e-02	ci left: 1.563986e-01	ci right 1.709979e-01	k: 1636	n:10000
CLPTM1   10000 perm   2 sec   (6466 perm/sec)   p_kst 1.636000e-01   p_cons 1.539000e-01   p_joint 1.426000e-01

Outputting figure to mutsig2_images.part000000000039/CLPTM1.3_2066_10000_0.1636_0.1539_0.1426.png
                gene_name: CLPTM1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 57 percent done.
CLDN12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.139383e-02	ci left: 3.582391e-01	ci right 3.772380e-01	k: 3677	n:10000
Cons ci ratio: 2.246282e-02	ci left: 7.442221e-01	ci right 7.612304e-01	k: 7528	n:10000
KS ci ratio: 1.083685e-01	ci left: 1.093957e-01	ci right 1.220291e-01	k: 1156	n:10000
CLDN12   10000 perm   1 sec   (7541 perm/sec)   p_kst 1.156000e-01   p_cons 7.528000e-01   p_joint 3.677000e-01

Joint ci ratio: 4.276793e-02	ci left: 2.894301e-01	ci right 3.021293e-01	k: 5915	n:20000
Cons ci ratio: 1.598187e-02	ci left: 7.444417e-01	ci right 7.564854e-01	k: 15010	n:20000
KS ci ratio: 7.638710e-02	ci left: 1.118880e-01	ci right 1.208239e-01	k: 2326	n:20000
CLDN12   20000 perm   3 sec   (6647 perm/sec)   p_kst 1.163000e-01   p_cons 7.505000e-01   p_joint 2.957500e-01

Outputting figure to mutsig2_images.part000000000039/CLDN12.2_739_20000_0.1163_0.7505_0.29575.png
                gene_name: CLDN12
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 59 percent done.
CLDN18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.584355e-02	ci left: 1.363893e-01	ci right 1.502192e-01	k: 1432	n:10000
Cons ci ratio: 3.799760e-02	ci left: 5.056516e-01	ci right 5.253394e-01	k: 5155	n:10000
KS ci ratio: 2.067437e-01	ci left: 3.110398e-02	ci right 3.837033e-02	k: 346	n:10000
CLDN18   10000 perm   1 sec   (7015 perm/sec)   p_kst 3.460000e-02   p_cons 5.155000e-01   p_joint 1.432000e-01

Joint ci ratio: 7.549048e-02	ci left: 1.142973e-01	ci right 1.233138e-01	k: 2375	n:20000
Cons ci ratio: 2.697807e-02	ci left: 5.065465e-01	ci right 5.204496e-01	k: 10270	n:20000
KS ci ratio: 1.514734e-01	ci left: 2.994113e-02	ci right 3.489604e-02	k: 647	n:20000
CLDN18   20000 perm   3 sec   (6349 perm/sec)   p_kst 3.235000e-02   p_cons 5.135000e-01   p_joint 1.187500e-01

Joint ci ratio: 5.779189e-02	ci left: 1.291106e-01	ci right 1.368273e-01	k: 3988	n:30000
Cons ci ratio: 2.193564e-02	ci left: 5.099269e-01	ci right 5.212701e-01	k: 15468	n:30000
KS ci ratio: 1.248109e-01	ci left: 2.984322e-02	ci right 3.384812e-02	k: 954	n:30000
CLDN18   30000 perm   5 sec   (6113 perm/sec)   p_kst 3.180000e-02   p_cons 5.156000e-01   p_joint 1.329333e-01

Joint ci ratio: 5.223302e-02	ci left: 1.201918e-01	ci right 1.266630e-01	k: 4936	n:40000
Cons ci ratio: 1.895621e-02	ci left: 5.117643e-01	ci right 5.215833e-01	k: 20667	n:40000
KS ci ratio: 1.081484e-01	ci left: 3.007766e-02	ci right 3.354074e-02	k: 1271	n:40000
CLDN18   40000 perm   7 sec   (5932 perm/sec)   p_kst 3.177500e-02   p_cons 5.166750e-01   p_joint 1.234000e-01

Joint ci ratio: 4.675438e-02	ci left: 1.203707e-01	ci right 1.261531e-01	k: 6162	n:50000
Cons ci ratio: 1.695490e-02	ci left: 5.122890e-01	ci right 5.210691e-01	k: 25834	n:50000
KS ci ratio: 9.755797e-02	ci left: 2.975194e-02	ci right 3.282279e-02	k: 1563	n:50000
CLDN18   50000 perm   9 sec   (5791 perm/sec)   p_kst 3.126000e-02   p_cons 5.166800e-01   p_joint 1.232400e-01

Outputting figure to mutsig2_images.part000000000039/CLDN18.2_1030_50000_0.03126_0.51668_0.12324.png
                gene_name: CLDN18
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 61 percent done.
CLDN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.753445e-02	ci left: 8.258483e-01	ci right 8.405571e-01	k: 8333	n:10000
KS ci ratio: 1.791163e-02	ci left: 8.197466e-01	ci right 8.346623e-01	k: 8273	n:10000
CLDN6   10000 perm   1 sec   (7601 perm/sec)   p_kst 8.273000e-01   p_cons 8.333000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLDN6.2_667_10000_0.8273_0.8333_1.png
                gene_name: CLDN6
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
CLDN7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.211278e-02	ci left: 9.072023e-01	ci right 9.183559e-01	k: 9129	n:10000
Cons ci ratio: 2.327743e-02	ci left: 7.305765e-01	ci right 7.478839e-01	k: 7393	n:10000
KS ci ratio: 7.830018e-02	ci left: 1.924939e-01	ci right 2.082810e-01	k: 2003	n:10000
CLDN7   10000 perm   1 sec   (6791 perm/sec)   p_kst 2.003000e-01   p_cons 7.393000e-01   p_joint 9.129000e-01

Outputting figure to mutsig2_images.part000000000039/CLDN7.2_652_10000_0.2003_0.7393_0.9129.png
                gene_name: CLDN7
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 65 percent done.
CLDND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.844577e-03	ci left: 9.669936e-01	ci right 9.737287e-01	k: 9705	n:10000
Cons ci ratio: 2.385131e-02	ci left: 7.209804e-01	ci right 7.384856e-01	k: 7298	n:10000
KS ci ratio: 2.690152e-02	ci left: 6.705543e-01	ci right 6.889408e-01	k: 6798	n:10000
CLDND1   10000 perm   1 sec   (7444 perm/sec)   p_kst 6.798000e-01   p_cons 7.298000e-01   p_joint 9.705000e-01

Outputting figure to mutsig2_images.part000000000039/CLDND1.2_855_10000_0.6798_0.7298_0.9705.png
                gene_name: CLDND1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 67 percent done.
CLDND2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.918818e-03	ci left: 9.880698e-01	ci right 9.920369e-01	k: 9902	n:10000
Cons ci ratio: 2.047888e-02	ci left: 7.774236e-01	ci right 7.936097e-01	k: 7856	n:10000
KS ci ratio: 1.272679e-02	ci left: 8.987765e-01	ci right 9.103866e-01	k: 9047	n:10000
CLDND2   10000 perm   1 sec   (7744 perm/sec)   p_kst 9.047000e-01   p_cons 7.856000e-01   p_joint 9.902000e-01

Outputting figure to mutsig2_images.part000000000039/CLDND2.2_520_10000_0.9047_0.7856_0.9902.png
                gene_name: CLDND2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 69 percent done.
CLEC10A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.600967e-02	ci left: 6.851647e-01	ci right 7.033220e-01	k: 6943	n:10000
Cons ci ratio: 8.195533e-03	ci left: 9.540918e-01	ci right 9.620385e-01	k: 9582	n:10000
KS ci ratio: 6.838763e-02	ci left: 2.387696e-01	ci right 2.557779e-01	k: 2472	n:10000
CLEC10A   10000 perm   1 sec   (7445 perm/sec)   p_kst 2.472000e-01   p_cons 9.582000e-01   p_joint 6.943000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC10A.2_992_10000_0.2472_0.9582_0.6943.png
                gene_name: CLEC10A
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 70 percent done.
CLEC12A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.160355e-02	ci left: 4.603775e-01	ci right 4.800399e-01	k: 4702	n:10000
KS ci ratio: 2.173246e-02	ci left: 7.564621e-01	ci right 7.731834e-01	k: 7649	n:10000
CLEC12A   10000 perm   1 sec   (7769 perm/sec)   p_kst 7.649000e-01   p_cons 4.702000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLEC12A.2_822_10000_0.7649_0.4702_1.png
                gene_name: CLEC12A
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
CLEC14A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.577464e-02	ci left: 4.132907e-01	ci right 4.327542e-01	k: 4230	n:10000
Cons ci ratio: 9.233604e-02	ci left: 1.456039e-01	ci right 1.597991e-01	k: 1526	n:10000
KS ci ratio: 4.578402e-02	ci left: 4.131910e-01	ci right 4.326539e-01	k: 4229	n:10000
CLEC14A   10000 perm   1 sec   (7080 perm/sec)   p_kst 4.229000e-01   p_cons 1.526000e-01   p_joint 4.230000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC14A.2_1477_10000_0.4229_0.1526_0.423.png
                gene_name: CLEC14A
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 74 percent done.
CLEC18B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.090017e-02	ci left: 1.496259e-01	ci right 1.639746e-01	k: 1567	n:10000
Cons ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
KS ci ratio: 1.596265e-02	ci left: 8.508006e-01	ci right 8.645904e-01	k: 8578	n:10000
CLEC18B   10000 perm   1 sec   (7222 perm/sec)   p_kst 8.578000e-01   p_cons 4.670000e-02   p_joint 1.567000e-01

Joint ci ratio: 3.901406e-02	ci left: 3.288560e-01	ci right 3.419918e-01	k: 6708	n:20000
Cons ci ratio: 1.231045e-01	ci left: 4.527241e-02	ci right 5.125980e-02	k: 964	n:20000
KS ci ratio: 1.114504e-02	ci left: 8.559759e-01	ci right 8.656190e-01	k: 17217	n:20000
CLEC18B   20000 perm   3 sec   (5987 perm/sec)   p_kst 8.608500e-01   p_cons 4.820000e-02   p_joint 3.354000e-01

Joint ci ratio: 3.218512e-02	ci left: 3.255090e-01	ci right 3.361904e-01	k: 9925	n:30000
Cons ci ratio: 1.007531e-01	ci left: 4.560825e-02	ci right 5.047975e-02	k: 1440	n:30000
KS ci ratio: 9.066089e-03	ci left: 8.577756e-01	ci right 8.656208e-01	k: 25852	n:30000
CLEC18B   30000 perm   5 sec   (5802 perm/sec)   p_kst 8.617333e-01   p_cons 4.800000e-02   p_joint 3.308333e-01

Joint ci ratio: 2.573687e-02	ci left: 3.623238e-01	ci right 3.717955e-01	k: 14682	n:40000
Cons ci ratio: 8.629995e-02	ci left: 4.692932e-02	ci right 5.118645e-02	k: 1961	n:40000
KS ci ratio: 7.812062e-03	ci left: 8.595157e-01	ci right 8.662815e-01	k: 34517	n:40000
CLEC18B   40000 perm   7 sec   (5618 perm/sec)   p_kst 8.629250e-01   p_cons 4.902500e-02   p_joint 3.670500e-01

Outputting figure to mutsig2_images.part000000000039/CLEC18B.2_1420_40000_0.86293_0.049025_0.36705.png
                gene_name: CLEC18B
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 76 percent done.
CLEC1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
Cons ci ratio: 8.392110e-02	ci left: 1.715307e-01	ci right 1.866567e-01	k: 1790	n:10000
KS ci ratio: 6.340926e-02	ci left: 2.676508e-01	ci right 2.852796e-01	k: 2764	n:10000
CLEC1B   10000 perm   1 sec   (7517 perm/sec)   p_kst 2.764000e-01   p_cons 1.790000e-01   p_joint 1.651000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC1B.2_714_10000_0.2764_0.179_0.1651.png
                gene_name: CLEC1B
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 78 percent done.
CLEC2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.697687e-03	ci left: 9.376532e-01	ci right 9.468871e-01	k: 9424	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CLEC2B   10000 perm   1 sec   (7651 perm/sec)   p_kst 1   p_cons 9.424000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLEC2B.2_466_10000_1_0.9424_1.png
                gene_name: CLEC2B
               theta_stop: 0.0097 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
CLEC4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.754394e-02	ci left: 3.949592e-01	ci right 4.142964e-01	k: 4046	n:10000
KS ci ratio: 1.355138e-02	ci left: 8.870840e-01	ci right 8.992859e-01	k: 8933	n:10000
CLEC4A   10000 perm   1 sec   (7838 perm/sec)   p_kst 8.933000e-01   p_cons 4.046000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLEC4A.2_738_10000_0.8933_0.4046_1.png
                gene_name: CLEC4A
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
CLEC4E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.681647e-02	ci left: 8.373491e-01	ci right 8.516496e-01	k: 8446	n:10000
Cons ci ratio: 3.463008e-02	ci left: 5.518081e-01	ci right 5.713560e-01	k: 5616	n:10000
KS ci ratio: 3.755134e-02	ci left: 5.115541e-01	ci right 5.312334e-01	k: 5214	n:10000
CLEC4E   10000 perm   1 sec   (7914 perm/sec)   p_kst 5.214000e-01   p_cons 5.616000e-01   p_joint 8.446000e-01

Outputting figure to mutsig2_images.part000000000039/CLEC4E.2_684_10000_0.5214_0.5616_0.8446.png
                gene_name: CLEC4E
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 83 percent done.
CLGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.890240e-02	ci left: 3.815183e-01	ci right 4.007452e-01	k: 3911	n:10000
Cons ci ratio: 9.141929e-02	ci left: 1.481542e-01	ci right 1.624472e-01	k: 1552	n:10000
KS ci ratio: 2.427486e-02	ci left: 7.139129e-01	ci right 7.315572e-01	k: 7228	n:10000
CLGN   10000 perm   1 sec   (6909 perm/sec)   p_kst 7.228000e-01   p_cons 1.552000e-01   p_joint 3.911000e-01

Outputting figure to mutsig2_images.part000000000039/CLGN.2_1889_10000_0.7228_0.1552_0.3911.png
                gene_name: CLGN
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 85 percent done.
CLIC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.013606e-02	ci left: 9.324734e-01	ci right 9.420699e-01	k: 9374	n:10000
Cons ci ratio: 3.005765e-02	ci left: 6.201489e-01	ci right 6.391755e-01	k: 6297	n:10000
KS ci ratio: 1.403660e-02	ci left: 8.800177e-01	ci right 8.925563e-01	k: 8864	n:10000
CLIC5   10000 perm   1 sec   (7539 perm/sec)   p_kst 8.864000e-01   p_cons 6.297000e-01   p_joint 9.374000e-01

Outputting figure to mutsig2_images.part000000000039/CLIC5.2_1324_10000_0.8864_0.6297_0.9374.png
                gene_name: CLIC5
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 87 percent done.
CLIC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.028651e-01	ci left: 1.202398e-01	ci right 1.333784e-01	k: 1267	n:10000
Cons ci ratio: 1.310673e-01	ci left: 7.669486e-02	ci right 8.755004e-02	k: 820	n:10000
KS ci ratio: 3.668042e-02	ci left: 5.232632e-01	ci right 5.429175e-01	k: 5331	n:10000
CLIC6   10000 perm   1 sec   (7062 perm/sec)   p_kst 5.331000e-01   p_cons 8.200000e-02   p_joint 1.267000e-01

Joint ci ratio: 7.001264e-02	ci left: 1.307356e-01	ci right 1.402706e-01	k: 2709	n:20000
Cons ci ratio: 9.213143e-02	ci left: 7.916341e-02	ci right 8.685833e-02	k: 1659	n:20000
KS ci ratio: 2.587889e-02	ci left: 5.273072e-01	ci right 5.411828e-01	k: 10685	n:20000
CLIC6   20000 perm   3 sec   (6187 perm/sec)   p_kst 5.342500e-01   p_cons 8.295000e-02   p_joint 1.354500e-01

Outputting figure to mutsig2_images.part000000000039/CLIC6.2_2085_20000_0.53425_0.08295_0.13545.png
                gene_name: CLIC6
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 89 percent done.
CLK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.502554e-02	ci left: 5.461967e-01	ci right 5.657707e-01	k: 5560	n:10000
KS ci ratio: 2.242059e-02	ci left: 7.449300e-01	ci right 7.619221e-01	k: 7535	n:10000
CLK4   10000 perm   1 sec   (6688 perm/sec)   p_kst 7.535000e-01   p_cons 5.560000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLK4.2_1494_10000_0.7535_0.556_1.png
                gene_name: CLK4
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
CLN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.914966e-02	ci left: 3.791296e-01	ci right 3.983352e-01	k: 3887	n:10000
Cons ci ratio: 2.162371e-02	ci left: 7.582837e-01	ci right 7.749607e-01	k: 7667	n:10000
KS ci ratio: 5.994992e-02	ci left: 2.904329e-01	ci right 3.084840e-01	k: 2994	n:10000
CLN5   10000 perm   1 sec   (7199 perm/sec)   p_kst 2.994000e-01   p_cons 7.667000e-01   p_joint 3.887000e-01

Outputting figure to mutsig2_images.part000000000039/CLN5.2_1240_10000_0.2994_0.7667_0.3887.png
                gene_name: CLN5
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 93 percent done.
CLPB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.260658e-02	ci left: 5.812885e-01	ci right 6.006585e-01	k: 5910	n:10000
Cons ci ratio: 5.973631e-02	ci left: 2.919197e-01	ci right 3.099964e-01	k: 3009	n:10000
KS ci ratio: 3.878641e-03	ci left: 9.882892e-01	ci right 9.922172e-01	k: 9904	n:10000
CLPB   10000 perm   1 sec   (6921 perm/sec)   p_kst 9.904000e-01   p_cons 3.009000e-01   p_joint 5.910000e-01

Outputting figure to mutsig2_images.part000000000039/CLPB.2_2192_10000_0.9904_0.3009_0.591.png
                gene_name: CLPB
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 94 percent done.
CLPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.399478e-02	ci left: 8.806319e-01	ci right 8.931418e-01	k: 8870	n:10000
KS ci ratio: 1.135109e-02	ci left: 9.172915e-01	ci right 9.278607e-01	k: 9227	n:10000
CLPP   10000 perm   1 sec   (7425 perm/sec)   p_kst 9.227000e-01   p_cons 8.870000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLPP.2_858_10000_0.9227_0.887_1.png
                gene_name: CLPP
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
CLPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.171276e-02	ci left: 9.125529e-01	ci right 9.234021e-01	k: 9181	n:10000
KS ci ratio: 1.161915e-02	ci left: 9.137886e-01	ci right 9.245657e-01	k: 9193	n:10000
CLPS   10000 perm   1 sec   (8107 perm/sec)   p_kst 9.193000e-01   p_cons 9.181000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000039/CLPS.2_351_10000_0.9193_0.9181_1.png
                gene_name: CLPS
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
CLRN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.152409e-01	ci left: 9.769325e-02	ci right 1.097387e-01	k: 1036	n:10000
KS ci ratio: 1.088336e-02	ci left: 9.232741e-01	ci right 9.334747e-01	k: 9285	n:10000
CLRN2   10000 perm   1 sec   (7631 perm/sec)   p_kst 9.285000e-01   p_cons 1.036000e-01   p_joint 1

Joint ci ratio: 8.349091e-03	ci left: 9.129375e-01	ci right 9.206408e-01	k: 18337	n:20000
Cons ci ratio: 9.352068e-02	ci left: 7.696131e-02	ci right 8.456110e-02	k: 1614	n:20000
KS ci ratio: 7.886088e-03	ci left: 9.214158e-01	ci right 9.287600e-01	k: 18503	n:20000
CLRN2   20000 perm   3 sec   (6694 perm/sec)   p_kst 9.251500e-01   p_cons 8.070000e-02   p_joint 9.168500e-01

Outputting figure to mutsig2_images.part000000000039/CLRN2.2_711_20000_0.92515_0.0807_0.91685.png
                gene_name: CLRN2
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000039
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 39 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1714>
Subject: Job 9893889: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1714>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000040> was used as the working directory.
Started at Sat Oct  6 00:03:14 2012
Results reported at Sat Oct  6 00:18:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000040.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000040.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 40  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000040.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    941.84 sec.
    Max Memory :      3402 MB
    Max Swap   :      5889 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
40
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 40
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 40: processing genes 3517 - 3606
Calculating significance of each gene.
Using projection method.
3517	CLTA	3.949336e-01
3518	CLTB	1
3519	CLTC	5.308134e-01
3520	CLTCL1	5.504830e-01
3521	CLU	2.741192e-01
3522	CLUAP1	1.559483e-01
3523	CLUL1	7.029470e-01
3524	CLVS1	3.742025e-01
3525	CLVS2	6.109472e-01
3526	CLYBL	3.870920e-03
3527	CMA1	1
3528	CMAS	5.941239e-02
3529	CMBL	1
3530	CMC1	2.698013e-01
3531	CMIP	9.608502e-01
3532	CMKLR1	6.114103e-01
3533	CMPK1	2.596116e-01
3534	CMPK2	7.146796e-01
3535	CMTM1	6.843754e-02
3536	CMTM2	3.164191e-02
3537	CMTM3	1
3538	CMTM4	3.054652e-01
3539	CMTM5	2.511898e-01
3540	CMTM6	1
3541	CMTM7	1
3542	CMTM8	1
3543	CMYA5	3.921686e-01
3544	CNBD1	1.168686e-03
3545	CNBP	1
3546	CNDP1	7.601416e-01
3547	CNDP2	1.743305e-01
3548	CNFN	1
3549	CNGA1	5.760266e-01
3550	CNGA2	1.098414e-01
3551	CNGA3	3.216474e-01
3552	CNGA4	2.698541e-01
3553	CNGB1	5.906984e-01
3554	CNGB3	2.843449e-03
3555	CNIH	3.826872e-02
3556	CNIH2	1
3557	CNIH3	1.574639e-02
3558	CNIH4	1
3559	CNKSR1	3.096713e-01
3560	CNKSR2	5.916311e-03
3561	CNKSR3	2.702118e-01
3562	CNN1	6.498944e-01
3563	CNN2	8.790365e-01
3564	CNN3	1
3565	CNNM1	9.218234e-02
3566	CNNM2	7.259659e-01
3567	CNNM3	5.929439e-01
3568	CNNM4	9.712843e-01
3569	CNO	1
3570	CNOT1	4.241130e-01
3571	CNOT10	2.425937e-01
3572	CNOT2	8.851493e-01
3573	CNOT3	9.487820e-01
3574	CNOT4	9.374223e-01
3575	CNOT6	2.784001e-01
3576	CNOT6L	4.346947e-01
3577	CNOT7	8.861494e-02
3578	CNOT8	3.073180e-01
3579	CNP	1
3580	CNPY1	7.649265e-02
3581	CNPY2	1.463360e-01
3582	CNPY3	1
3583	CNPY4	4.656780e-01
3584	CNR1	2.043311e-01
3585	CNR2	1
3586	CNRIP1	5.436342e-03
3587	CNST	9.706326e-01
3588	CNTD1	3.741026e-01
3589	CNTD2	1
3590	CNTF	3.564124e-01
3591	CNTFR	5.254258e-01
3592	CNTLN	4.287547e-01
3593	CNTN1	5.341288e-05
3594	CNTN2	3.326720e-01
3595	CNTN3	3.419991e-03
3596	CNTN4	3.463486e-02
3597	CNTN5	2.156127e-01
3598	CNTN6	2.347629e-07
3599	CNTNAP1	7.875429e-01
In gene CNTNAP2 the following bins exceed PROBCAP:
    READ-AG-A008	categ 6	N = 3966    n = 1	mu =   1.03e-07
3600	CNTNAP2	3.907229e-03
3601	CNTNAP3	8.757968e-01
In gene CNTNAP4 the following bins exceed PROBCAP:
    COAD-AA-3852	categ 6	N = 4015    n = 1	mu =   3.62e-07
3602	CNTNAP4	2.846967e-02
3603	CNTNAP5	1.754277e-01
3604	CNTROB	1.994842e-01
3605	COASY	9.881579e-01
3606	COBL	4.086032e-01
Done

Running MutSig 2:
Scatter job 40: processing genes 3517 - 3606
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CMYA5
Processing conservation and coverage...
81% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.827749e-02	ci left: 6.483055e-01	ci right 6.670026e-01	k: 6577	n:10000
Cons ci ratio: 3.843345e-02	ci left: 4.999504e-01	ci right 5.196439e-01	k: 5098	n:10000
KS ci ratio: 3.289058e-02	ci left: 5.770748e-01	ci right 5.964746e-01	k: 5868	n:10000
CMYA5   10000 perm   4 sec   (2340 perm/sec)   p_kst 5.868000e-01   p_cons 5.098000e-01   p_joint 6.577000e-01

Outputting figure to mutsig2_images.part000000000040/CMYA5.28_12262_10000_0.5868_0.5098_0.6577.png
                gene_name: CMYA5
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 2 percent done.
CNOT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.981796e-02	ci left: 3.727610e-01	ci right 3.919076e-01	k: 3823	n:10000
Cons ci ratio: 3.194384e-03	ci left: 9.917226e-01	ci right 9.949800e-01	k: 9935	n:10000
KS ci ratio: 6.673845e-02	ci left: 2.478638e-01	ci right 2.650783e-01	k: 2564	n:10000
CNOT1   10000 perm   3 sec   (3477 perm/sec)   p_kst 2.564000e-01   p_cons 9.935000e-01   p_joint 3.823000e-01

Outputting figure to mutsig2_images.part000000000040/CNOT1.23_7545_10000_0.2564_0.9935_0.3823.png
                gene_name: CNOT1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 3 percent done.
CNTN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.457464e-03	ci left: 9.513780e-01	ci right 9.595540e-01	k: 9556	n:10000
Cons ci ratio: 7.788970e-03	ci left: 9.581703e-01	ci right 9.657575e-01	k: 9621	n:10000
KS ci ratio: 1.813674e-02	ci left: 8.160871e-01	ci right 8.311239e-01	k: 8237	n:10000
CNTN6   10000 perm   3 sec   (3762 perm/sec)   p_kst 8.237000e-01   p_cons 9.621000e-01   p_joint 9.556000e-01

Outputting figure to mutsig2_images.part000000000040/CNTN6.22_3175_10000_0.8237_0.9621_0.9556.png
                gene_name: CNTN6
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 5 percent done.
CNTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.327051e-02	ci left: 1.737925e-01	ci right 1.889935e-01	k: 1813	n:10000
Cons ci ratio: 8.170639e-02	ci left: 1.793999e-01	ci right 1.947829e-01	k: 1870	n:10000
KS ci ratio: 6.019367e-02	ci left: 2.887481e-01	ci right 3.067699e-01	k: 2977	n:10000
CNTN1   10000 perm   3 sec   (3391 perm/sec)   p_kst 2.977000e-01   p_cons 1.870000e-01   p_joint 1.813000e-01

Outputting figure to mutsig2_images.part000000000040/CNTN1.17_3149_10000_0.2977_0.187_0.1813.png
                gene_name: CNTN1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 6 percent done.
CNTNAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.948304e-02	ci left: 1.537479e-01	ci right 1.682502e-01	k: 1609	n:10000
Cons ci ratio: 1.668597e-01	ci left: 4.792139e-02	ci right 5.674170e-02	k: 522	n:10000
KS ci ratio: 4.353171e-02	ci left: 4.379204e-01	ci right 4.575101e-01	k: 4477	n:10000
CNTNAP5   10000 perm   3 sec   (3921 perm/sec)   p_kst 4.477000e-01   p_cons 5.220000e-02   p_joint 1.609000e-01

Joint ci ratio: 7.049484e-02	ci left: 1.291596e-01	ci right 1.386471e-01	k: 2677	n:20000
Cons ci ratio: 1.181094e-01	ci left: 4.910901e-02	ci right 5.532199e-02	k: 1043	n:20000
KS ci ratio: 3.064763e-02	ci left: 4.429881e-01	ci right 4.568265e-01	k: 8998	n:20000
CNTNAP5   20000 perm   5 sec   (3649 perm/sec)   p_kst 4.499000e-01   p_cons 5.215000e-02   p_joint 1.338500e-01

Joint ci ratio: 5.441636e-02	ci left: 1.434391e-01	ci right 1.514960e-01	k: 4423	n:30000
Cons ci ratio: 9.666480e-02	ci left: 4.944925e-02	ci right 5.450463e-02	k: 1558	n:30000
KS ci ratio: 2.505138e-02	ci left: 4.437263e-01	ci right 4.550169e-01	k: 13481	n:30000
CNTNAP5   30000 perm   8 sec   (3530 perm/sec)   p_kst 4.493667e-01   p_cons 5.193333e-02   p_joint 1.474333e-01

Outputting figure to mutsig2_images.part000000000040/CNTNAP5.13_4017_30000_0.44937_0.051933_0.14743.png
                gene_name: CNTNAP5
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 8 percent done.
CNTNAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.121080e-02	ci left: 1.487429e-01	ci right 1.630582e-01	k: 1558	n:10000
Cons ci ratio: 2.519761e-02	ci left: 6.985753e-01	ci right 7.165037e-01	k: 7076	n:10000
KS ci ratio: 1.364833e-01	ci left: 7.097701e-02	ci right 8.147145e-02	k: 761	n:10000
CNTNAP2   10000 perm   3 sec   (3710 perm/sec)   p_kst 7.610000e-02   p_cons 7.076000e-01   p_joint 1.558000e-01

Joint ci ratio: 6.316985e-02	ci left: 1.563258e-01	ci right 1.665729e-01	k: 3228	n:20000
Cons ci ratio: 1.725308e-02	ci left: 7.144756e-01	ci right 7.269601e-01	k: 14415	n:20000
KS ci ratio: 9.542997e-02	ci left: 7.407543e-02	ci right 8.154786e-02	k: 1555	n:20000
CNTNAP2   20000 perm   6 sec   (3552 perm/sec)   p_kst 7.775000e-02   p_cons 7.207500e-01   p_joint 1.614000e-01

Outputting figure to mutsig2_images.part000000000040/CNTNAP2.12_4092_20000_0.07775_0.72075_0.1614.png
                gene_name: CNTNAP2
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 10 percent done.
CNTNAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.193945e-01	ci left: 9.146191e-02	ci right 1.031739e-01	k: 972	n:10000
Cons ci ratio: 4.586852e-02	ci left: 4.122941e-01	ci right 4.317514e-01	k: 4220	n:10000
KS ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
CNTNAP4   10000 perm   2 sec   (4281 perm/sec)   p_kst 5.140000e-02   p_cons 4.220000e-01   p_joint 9.720000e-02

Joint ci ratio: 7.145284e-02	ci left: 1.261067e-01	ci right 1.355010e-01	k: 2615	n:20000
Cons ci ratio: 3.399803e-02	ci left: 3.924527e-01	ci right 4.060766e-01	k: 7985	n:20000
KS ci ratio: 1.167586e-01	ci left: 5.022695e-02	ci right 5.650370e-02	k: 1066	n:20000
CNTNAP4   20000 perm   5 sec   (3776 perm/sec)   p_kst 5.330000e-02   p_cons 3.992500e-01   p_joint 1.307500e-01

Joint ci ratio: 5.550997e-02	ci left: 1.385625e-01	ci right 1.465069e-01	k: 4275	n:30000
Cons ci ratio: 2.672571e-02	ci left: 4.120110e-01	ci right 4.232050e-01	k: 12528	n:30000
KS ci ratio: 9.469479e-02	ci left: 5.146904e-02	ci right 5.661776e-02	k: 1620	n:30000
CNTNAP4   30000 perm   8 sec   (3581 perm/sec)   p_kst 5.400000e-02   p_cons 4.176000e-01   p_joint 1.425000e-01

Outputting figure to mutsig2_images.part000000000040/CNTNAP4.12_4036_30000_0.054_0.4176_0.1425.png
                gene_name: CNTNAP4
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 11 percent done.
CNGB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.814273e-02	ci left: 3.033218e-01	ci right 3.215876e-01	k: 3124	n:10000
Cons ci ratio: 4.567166e-02	ci left: 4.143870e-01	ci right 4.338572e-01	k: 4241	n:10000
KS ci ratio: 8.764072e-02	ci left: 1.593447e-01	ci right 1.740500e-01	k: 1666	n:10000
CNGB3   10000 perm   2 sec   (4028 perm/sec)   p_kst 1.666000e-01   p_cons 4.241000e-01   p_joint 3.124000e-01

Outputting figure to mutsig2_images.part000000000040/CNGB3.11_2502_10000_0.1666_0.4241_0.3124.png
                gene_name: CNGB3
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 13 percent done.
CNTN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.981027e-02	ci left: 4.823548e-01	ci right 5.020497e-01	k: 4922	n:10000
Cons ci ratio: 3.174386e-02	ci left: 5.942350e-01	ci right 6.135045e-01	k: 6039	n:10000
KS ci ratio: 6.016490e-02	ci left: 2.889463e-01	ci right 3.069715e-01	k: 2979	n:10000
CNTN3   10000 perm   2 sec   (4775 perm/sec)   p_kst 2.979000e-01   p_cons 6.039000e-01   p_joint 4.922000e-01

Outputting figure to mutsig2_images.part000000000040/CNTN3.11_3175_10000_0.2979_0.6039_0.4922.png
                gene_name: CNTN3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 15 percent done.
CNTN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.063575e-02	ci left: 9.263722e-01	ci right 9.363747e-01	k: 9315	n:10000
KS ci ratio: 2.607094e-02	ci left: 6.841568e-01	ci right 7.023305e-01	k: 6933	n:10000
CNTN4   10000 perm   2 sec   (4262 perm/sec)   p_kst 6.933000e-01   p_cons 9.315000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNTN4.11_3169_10000_0.6933_0.9315_1.png
                gene_name: CNTN4
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
CLTC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.432065e-01	ci left: 6.468834e-02	ci right 7.476406e-02	k: 696	n:10000
Cons ci ratio: 1.215838e-02	ci left: 9.065853e-01	ci right 9.177733e-01	k: 9123	n:10000
KS ci ratio: 2.016804e-01	ci left: 3.271977e-02	ci right 4.015343e-02	k: 363	n:10000
CLTC   10000 perm   3 sec   (3949 perm/sec)   p_kst 3.630000e-02   p_cons 9.123000e-01   p_joint 6.960000e-02

Joint ci ratio: 9.644178e-02	ci left: 7.260863e-02	ci right 8.001510e-02	k: 1525	n:20000
Cons ci ratio: 8.893073e-03	ci left: 9.025847e-01	ci right 9.106966e-01	k: 18134	n:20000
KS ci ratio: 1.402313e-01	ci left: 3.495774e-02	ci right 4.027778e-02	k: 751	n:20000
CLTC   20000 perm   6 sec   (3528 perm/sec)   p_kst 3.755000e-02   p_cons 9.067000e-01   p_joint 7.625000e-02

Joint ci ratio: 8.889821e-02	ci left: 5.815453e-02	ci right 6.359756e-02	k: 1825	n:30000
Cons ci ratio: 7.243591e-03	ci left: 9.037589e-01	ci right 9.103620e-01	k: 27213	n:30000
KS ci ratio: 1.164992e-01	ci left: 3.424427e-02	ci right 3.851279e-02	k: 1090	n:30000
CLTC   30000 perm   9 sec   (3354 perm/sec)   p_kst 3.633333e-02   p_cons 9.071000e-01   p_joint 6.083333e-02

Joint ci ratio: 7.603951e-02	ci left: 5.992617e-02	ci right 6.468762e-02	k: 2491	n:40000
Cons ci ratio: 6.261790e-03	ci left: 9.045172e-01	ci right 9.102235e-01	k: 36296	n:40000
KS ci ratio: 1.003441e-01	ci left: 3.490299e-02	ci right 3.861465e-02	k: 1469	n:40000
CLTC   40000 perm   12 sec   (3277 perm/sec)   p_kst 3.672500e-02   p_cons 9.074000e-01   p_joint 6.227500e-02

Joint ci ratio: 6.956103e-02	ci left: 5.763886e-02	ci right 6.181244e-02	k: 2985	n:50000
Cons ci ratio: 5.645160e-03	ci left: 9.034692e-01	ci right 9.086036e-01	k: 45303	n:50000
KS ci ratio: 9.027479e-02	ci left: 3.469712e-02	ci right 3.799699e-02	k: 1816	n:50000
CLTC   50000 perm   16 sec   (3160 perm/sec)   p_kst 3.632000e-02   p_cons 9.060600e-01   p_joint 5.970000e-02

Outputting figure to mutsig2_images.part000000000040/CLTC.9_5156_50000_0.03632_0.90606_0.0597.png
                gene_name: CLTC
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 18 percent done.
CNKSR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.292450e-02	ci left: 5.765733e-01	ci right 5.959764e-01	k: 5863	n:10000
Cons ci ratio: 5.627086e-03	ci left: 9.769554e-01	ci right 9.825602e-01	k: 9799	n:10000
KS ci ratio: 4.614221e-02	ci left: 4.094040e-01	ci right 4.288431e-01	k: 4191	n:10000
CNKSR2   10000 perm   2 sec   (4693 perm/sec)   p_kst 4.191000e-01   p_cons 9.799000e-01   p_joint 5.863000e-01

Outputting figure to mutsig2_images.part000000000040/CNKSR2.9_3202_10000_0.4191_0.9799_0.5863.png
                gene_name: CNKSR2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 19 percent done.
CNNM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
Cons ci ratio: 4.038788e-02	ci left: 4.751602e-01	ci right 4.948486e-01	k: 4850	n:10000
KS ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
CNNM1   10000 perm   2 sec   (4734 perm/sec)   p_kst 1.450000e-02   p_cons 4.850000e-01   p_joint 7.170000e-02

Joint ci ratio: 1.624178e-01	ci left: 2.599753e-02	ci right 3.064096e-02	k: 565	n:20000
Cons ci ratio: 2.806793e-02	ci left: 4.867474e-01	ci right 5.006545e-01	k: 9874	n:20000
KS ci ratio: 2.338876e-01	ci left: 1.222918e-02	ci right 1.551439e-02	k: 276	n:20000
CNNM1   20000 perm   5 sec   (4310 perm/sec)   p_kst 1.380000e-02   p_cons 4.937000e-01   p_joint 2.825000e-02

Joint ci ratio: 1.381564e-01	ci left: 2.432522e-02	ci right 2.796733e-02	k: 783	n:30000
Cons ci ratio: 2.422749e-02	ci left: 4.603087e-01	ci right 4.716312e-01	k: 13979	n:30000
KS ci ratio: 1.910866e-01	ci left: 1.251047e-02	ci right 1.518490e-02	k: 414	n:30000
CNNM1   30000 perm   7 sec   (4144 perm/sec)   p_kst 1.380000e-02   p_cons 4.659667e-01   p_joint 2.610000e-02

Joint ci ratio: 9.919391e-02	ci left: 3.570814e-02	ci right 3.945938e-02	k: 1502	n:40000
Cons ci ratio: 2.090479e-02	ci left: 4.629002e-01	ci right 4.727044e-01	k: 18712	n:40000
KS ci ratio: 1.647833e-01	ci left: 1.279955e-02	ci right 1.512180e-02	k: 557	n:40000
CNNM1   40000 perm   10 sec   (4094 perm/sec)   p_kst 1.392500e-02   p_cons 4.678000e-01   p_joint 3.755000e-02

Joint ci ratio: 1.014396e-01	ci left: 2.752703e-02	ci right 3.048799e-02	k: 1449	n:50000
Cons ci ratio: 1.864772e-02	ci left: 4.647576e-01	ci right 4.735259e-01	k: 23457	n:50000
KS ci ratio: 1.550634e-01	ci left: 1.164070e-02	ci right 1.361649e-02	k: 630	n:50000
CNNM1   50000 perm   12 sec   (4004 perm/sec)   p_kst 1.260000e-02   p_cons 4.691400e-01   p_joint 2.898000e-02

Joint ci ratio: 8.764111e-02	ci left: 3.085075e-02	ci right 3.369473e-02	k: 1935	n:60000
Cons ci ratio: 1.703354e-02	ci left: 4.648336e-01	ci right 4.728361e-01	k: 28130	n:60000
KS ci ratio: 1.411008e-01	ci left: 1.180323e-02	ci right 1.361103e-02	k: 761	n:60000
CNNM1   60000 perm   15 sec   (3942 perm/sec)   p_kst 1.268333e-02   p_cons 4.688333e-01   p_joint 3.225000e-02

Joint ci ratio: 7.649627e-02	ci left: 3.477231e-02	ci right 3.755203e-02	k: 2530	n:70000
Cons ci ratio: 1.572730e-02	ci left: 4.664825e-01	ci right 4.738914e-01	k: 32913	n:70000
KS ci ratio: 1.304115e-01	ci left: 1.191124e-02	ci right 1.358666e-02	k: 891	n:70000
CNNM1   70000 perm   18 sec   (3874 perm/sec)   p_kst 1.272857e-02   p_cons 4.701857e-01   p_joint 3.614286e-02

Joint ci ratio: 6.824105e-02	ci left: 3.825909e-02	ci right 4.097443e-02	k: 3168	n:80000
Cons ci ratio: 1.473259e-02	ci left: 4.660116e-01	ci right 4.729406e-01	k: 37558	n:80000
KS ci ratio: 1.225642e-01	ci left: 1.185066e-02	ci right 1.340998e-02	k: 1009	n:80000
CNNM1   80000 perm   21 sec   (3807 perm/sec)   p_kst 1.261250e-02   p_cons 4.694750e-01   p_joint 3.960000e-02

Joint ci ratio: 6.774631e-02	ci left: 3.465026e-02	ci right 3.709089e-02	k: 3227	n:90000
Cons ci ratio: 1.389958e-02	ci left: 4.658684e-01	ci right 4.724002e-01	k: 42222	n:90000
KS ci ratio: 1.158780e-01	ci left: 1.182750e-02	ci right 1.329305e-02	k: 1129	n:90000
CNNM1   90000 perm   24 sec   (3754 perm/sec)   p_kst 1.254444e-02   p_cons 4.691333e-01   p_joint 3.585556e-02

Joint ci ratio: 6.247319e-02	ci left: 3.669534e-02	ci right 3.907156e-02	k: 3787	n:100000
Cons ci ratio: 1.318747e-02	ci left: 4.659929e-01	ci right 4.721889e-01	k: 46909	n:100000
KS ci ratio: 1.101787e-01	ci left: 1.181083e-02	ci right 1.319766e-02	k: 1249	n:100000
CNNM1   100000 perm   27 sec   (3706 perm/sec)   p_kst 1.249000e-02   p_cons 4.690900e-01   p_joint 3.787000e-02

Joint ci ratio: 5.900010e-02	ci left: 3.744234e-02	ci right 3.972752e-02	k: 4243	n:110000
Cons ci ratio: 1.255976e-02	ci left: 4.666924e-01	ci right 4.726001e-01	k: 51661	n:110000
KS ci ratio: 1.054011e-01	ci left: 1.176323e-02	ci right 1.308085e-02	k: 1365	n:110000
CNNM1   110000 perm   30 sec   (3663 perm/sec)   p_kst 1.240909e-02   p_cons 4.696455e-01   p_joint 3.857273e-02

Joint ci ratio: 5.968431e-02	ci left: 3.366337e-02	ci right 3.574253e-02	k: 4163	n:120000
Cons ci ratio: 1.202919e-02	ci left: 4.666479e-01	ci right 4.723036e-01	k: 56337	n:120000
KS ci ratio: 1.015780e-01	ci left: 1.163527e-02	ci right 1.288847e-02	k: 1470	n:120000
CNNM1   120000 perm   33 sec   (3591 perm/sec)   p_kst 1.225000e-02   p_cons 4.694750e-01   p_joint 3.469167e-02

Joint ci ratio: 5.723123e-02	ci left: 3.383303e-02	ci right 3.583394e-02	k: 4527	n:130000
Cons ci ratio: 1.156670e-02	ci left: 4.663533e-01	ci right 4.717865e-01	k: 60979	n:130000
KS ci ratio: 9.739469e-02	ci left: 1.170789e-02	ci right 1.291401e-02	k: 1599	n:130000
CNNM1   130000 perm   37 sec   (3548 perm/sec)   p_kst 1.230000e-02   p_cons 4.690692e-01   p_joint 3.482308e-02

Outputting figure to mutsig2_images.part000000000040/CNNM1.9_2900_130000_0.0123_0.46907_0.034823.png
                gene_name: CNNM1
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.036 

Current progress: 21 percent done.
CNTLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.297280e-02	ci left: 4.443061e-01	ci right 4.639206e-01	k: 4541	n:10000
Cons ci ratio: 8.676772e-02	ci left: 1.620951e-01	ci right 1.768979e-01	k: 1694	n:10000
KS ci ratio: 1.603451e-02	ci left: 8.496789e-01	ci right 8.635127e-01	k: 8567	n:10000
CNTLN   10000 perm   2 sec   (4023 perm/sec)   p_kst 8.567000e-01   p_cons 1.694000e-01   p_joint 4.541000e-01

Outputting figure to mutsig2_images.part000000000040/CNTLN.9_4355_10000_0.8567_0.1694_0.4541.png
                gene_name: CNTLN
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 23 percent done.
COBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.790096e-02	ci left: 3.913742e-01	ci right 4.106835e-01	k: 4010	n:10000
KS ci ratio: 1.473093e-02	ci left: 8.696873e-01	ci right 8.826927e-01	k: 8763	n:10000
COBL   10000 perm   2 sec   (4291 perm/sec)   p_kst 8.763000e-01   p_cons 4.010000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/COBL.9_3838_10000_0.8763_0.401_1.png
                gene_name: COBL
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
CLTCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.337419e-03	ci left: 9.526301e-01	ci right 9.607012e-01	k: 9568	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CLTCL1   10000 perm   2 sec   (4596 perm/sec)   p_kst 1   p_cons 9.568000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CLTCL1.8_5051_10000_1_0.9568_1.png
                gene_name: CLTCL1
               theta_stop: 0.0083 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
CMAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.118413e-01	ci left: 1.032490e-01	ci right 1.155795e-01	k: 1093	n:10000
Cons ci ratio: 2.577789e-01	ci left: 1.968303e-02	ci right 2.559958e-02	k: 225	n:10000
KS ci ratio: 7.454850e-02	ci left: 2.084612e-01	ci right 2.247043e-01	k: 2165	n:10000
CMAS   10000 perm   2 sec   (5336 perm/sec)   p_kst 2.165000e-01   p_cons 2.250000e-02   p_joint 1.093000e-01

Joint ci ratio: 9.783690e-02	ci left: 7.065356e-02	ci right 7.797078e-02	k: 1485	n:20000
Cons ci ratio: 1.777090e-01	ci left: 2.163632e-02	ci right 2.590368e-02	k: 474	n:20000
KS ci ratio: 5.245937e-02	ci left: 2.124922e-01	ci right 2.239899e-01	k: 4364	n:20000
CMAS   20000 perm   4 sec   (4676 perm/sec)   p_kst 2.182000e-01   p_cons 2.370000e-02   p_joint 7.425000e-02

Joint ci ratio: 9.408279e-02	ci left: 5.212081e-02	ci right 5.729919e-02	k: 1640	n:30000
Cons ci ratio: 1.487213e-01	ci left: 2.094787e-02	ci right 2.434544e-02	k: 678	n:30000
KS ci ratio: 4.299479e-02	ci left: 2.122803e-01	ci right 2.216412e-01	k: 6508	n:30000
CMAS   30000 perm   7 sec   (4480 perm/sec)   p_kst 2.169333e-01   p_cons 2.260000e-02   p_joint 5.466667e-02

Joint ci ratio: 8.568178e-02	ci left: 4.759051e-02	ci right 5.187516e-02	k: 1988	n:40000
Cons ci ratio: 1.282424e-01	ci left: 2.135945e-02	ci right 2.431039e-02	k: 912	n:40000
KS ci ratio: 3.677415e-02	ci left: 2.171404e-01	ci right 2.253001e-01	k: 8848	n:40000
CMAS   40000 perm   9 sec   (4269 perm/sec)   p_kst 2.212000e-01   p_cons 2.280000e-02   p_joint 4.970000e-02

Joint ci ratio: 6.937589e-02	ci left: 5.793396e-02	ci right 6.211730e-02	k: 3000	n:50000
Cons ci ratio: 1.165055e-01	ci left: 2.084867e-02	ci right 2.344723e-02	k: 1106	n:50000
KS ci ratio: 3.284275e-02	ci left: 2.180851e-01	ci right 2.253872e-01	k: 11086	n:50000
CMAS   50000 perm   12 sec   (4214 perm/sec)   p_kst 2.217200e-01   p_cons 2.212000e-02   p_joint 6.000000e-02

Joint ci ratio: 5.538730e-02	ci left: 7.491193e-02	ci right 7.919575e-02	k: 4622	n:60000
Cons ci ratio: 1.057216e-01	ci left: 2.121451e-02	ci right 2.359867e-02	k: 1343	n:60000
KS ci ratio: 3.002529e-02	ci left: 2.179007e-01	ci right 2.245596e-01	k: 13273	n:60000
CMAS   60000 perm   15 sec   (4033 perm/sec)   p_kst 2.212167e-01   p_cons 2.238333e-02   p_joint 7.703333e-02

Joint ci ratio: 4.946087e-02	ci left: 8.030258e-02	ci right 8.438926e-02	k: 5763	n:70000
Cons ci ratio: 9.730944e-02	ci left: 2.155351e-02	ci right 2.377202e-02	k: 1585	n:70000
KS ci ratio: 2.778229e-02	ci left: 2.183430e-01	ci right 2.245087e-01	k: 15499	n:70000
CMAS   70000 perm   18 sec   (3928 perm/sec)   p_kst 2.214143e-01   p_cons 2.264286e-02   p_joint 8.232857e-02

Outputting figure to mutsig2_images.part000000000040/CMAS.8_1337_70000_0.22141_0.022643_0.082329.png
                gene_name: CMAS
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.084 

Current progress: 27 percent done.
CNBD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.402247e-01	ci left: 1.087258e-02	ci right 1.541759e-02	k: 130	n:10000
Cons ci ratio: 4.310919e-01	ci left: 6.437624e-03	ci right 1.005764e-02	k: 81	n:10000
KS ci ratio: 1.347678e-01	ci left: 7.272051e-02	ci right 8.332686e-02	k: 779	n:10000
CNBD1   10000 perm   2 sec   (4656 perm/sec)   p_kst 7.790000e-02   p_cons 8.100000e-03   p_joint 1.300000e-02

Joint ci ratio: 3.744341e-01	ci left: 4.431766e-03	ci right 6.515982e-03	k: 108	n:20000
Cons ci ratio: 2.786178e-01	ci left: 8.434855e-03	ci right 1.121045e-02	k: 195	n:20000
KS ci ratio: 9.274202e-02	ci left: 7.818459e-02	ci right 8.583745e-02	k: 1639	n:20000
CNBD1   20000 perm   5 sec   (4278 perm/sec)   p_kst 8.195000e-02   p_cons 9.750000e-03   p_joint 5.400000e-03

Joint ci ratio: 1.959307e-01	ci left: 1.187572e-02	ci right 1.448649e-02	k: 394	n:30000
Cons ci ratio: 2.591891e-01	ci left: 6.586143e-03	ci right 8.577669e-03	k: 226	n:30000
KS ci ratio: 7.595976e-02	ci left: 7.842793e-02	ci right 8.465339e-02	k: 2445	n:30000
CNBD1   30000 perm   7 sec   (4229 perm/sec)   p_kst 8.150000e-02   p_cons 7.533333e-03   p_joint 1.313333e-02

Joint ci ratio: 2.113705e-01	ci left: 7.623672e-03	ci right 9.448754e-03	k: 340	n:40000
Cons ci ratio: 2.196418e-01	ci left: 7.032159e-03	ci right 8.790409e-03	k: 315	n:40000
KS ci ratio: 6.575404e-02	ci left: 7.891057e-02	ci right 8.430035e-02	k: 3263	n:40000
CNBD1   40000 perm   10 sec   (4051 perm/sec)   p_kst 8.157500e-02   p_cons 7.875000e-03   p_joint 8.500000e-03

Joint ci ratio: 1.967052e-01	ci left: 7.104644e-03	ci right 8.673300e-03	k: 393	n:50000
Cons ci ratio: 1.992701e-01	ci left: 6.914492e-03	ci right 8.463488e-03	k: 383	n:50000
KS ci ratio: 5.916036e-02	ci left: 7.832697e-02	ci right 8.312184e-02	k: 4035	n:50000
CNBD1   50000 perm   13 sec   (3883 perm/sec)   p_kst 8.070000e-02   p_cons 7.660000e-03   p_joint 7.860000e-03

Joint ci ratio: 1.502538e-01	ci left: 1.037333e-02	ci right 1.207444e-02	k: 672	n:60000
Cons ci ratio: 1.797200e-01	ci left: 7.159405e-03	ci right 8.588814e-03	k: 471	n:60000
KS ci ratio: 5.504615e-02	ci left: 7.578405e-02	ci right 8.009021e-02	k: 4675	n:60000
CNBD1   60000 perm   16 sec   (3775 perm/sec)   p_kst 7.791667e-02   p_cons 7.850000e-03   p_joint 1.120000e-02

Joint ci ratio: 1.468894e-01	ci left: 9.331199e-03	ci right 1.082412e-02	k: 704	n:70000
Cons ci ratio: 1.675684e-01	ci left: 7.106860e-03	ci right 8.420151e-03	k: 542	n:70000
KS ci ratio: 5.110186e-02	ci left: 7.555787e-02	ci right 7.953438e-02	k: 5427	n:70000
CNBD1   70000 perm   19 sec   (3721 perm/sec)   p_kst 7.752857e-02   p_cons 7.742857e-03   p_joint 1.005714e-02

Joint ci ratio: 1.450240e-01	ci left: 8.393326e-03	ci right 9.717645e-03	k: 723	n:80000
Cons ci ratio: 1.574599e-01	ci left: 7.081917e-03	ci right 8.304192e-03	k: 614	n:80000
KS ci ratio: 4.795425e-02	ci left: 7.523593e-02	ci right 7.894480e-02	k: 6166	n:80000
CNBD1   80000 perm   22 sec   (3653 perm/sec)   p_kst 7.707500e-02   p_cons 7.675000e-03   p_joint 9.037500e-03

Joint ci ratio: 1.576569e-01	ci left: 6.284157e-03	ci right 7.370218e-03	k: 613	n:90000
Cons ci ratio: 1.481180e-01	ci left: 7.149983e-03	ci right 8.304308e-03	k: 694	n:90000
KS ci ratio: 4.517250e-02	ci left: 7.546432e-02	ci right 7.896299e-02	k: 6948	n:90000
CNBD1   90000 perm   25 sec   (3591 perm/sec)   p_kst 7.720000e-02   p_cons 7.711111e-03   p_joint 6.811111e-03

Joint ci ratio: 1.604963e-01	ci left: 5.453910e-03	ci right 6.415087e-03	k: 592	n:100000
Cons ci ratio: 1.404459e-01	ci left: 7.186849e-03	ci right 8.281994e-03	k: 772	n:100000
KS ci ratio: 4.279771e-02	ci left: 7.574112e-02	ci right 7.906344e-02	k: 7739	n:100000
CNBD1   100000 perm   29 sec   (3463 perm/sec)   p_kst 7.739000e-02   p_cons 7.720000e-03   p_joint 5.920000e-03

Joint ci ratio: 1.428406e-01	ci left: 6.314075e-03	ci right 7.294019e-03	k: 747	n:110000
Cons ci ratio: 1.336173e-01	ci left: 7.244642e-03	ci right 8.290653e-03	k: 853	n:110000
KS ci ratio: 4.080083e-02	ci left: 7.583645e-02	ci right 7.900406e-02	k: 8515	n:110000
CNBD1   110000 perm   32 sec   (3446 perm/sec)   p_kst 7.740909e-02   p_cons 7.754545e-03   p_joint 6.790909e-03

Joint ci ratio: 1.412748e-01	ci left: 5.924448e-03	ci right 6.832988e-03	k: 764	n:120000
Cons ci ratio: 1.279729e-01	ci left: 7.261601e-03	ci right 8.262407e-03	k: 930	n:120000
KS ci ratio: 3.907793e-02	ci left: 7.585282e-02	ci right 7.888430e-02	k: 9283	n:120000
CNBD1   120000 perm   35 sec   (3424 perm/sec)   p_kst 7.735833e-02   p_cons 7.750000e-03   p_joint 6.366667e-03

Joint ci ratio: 1.400266e-01	ci left: 5.572552e-03	ci right 6.418943e-03	k: 778	n:130000
Cons ci ratio: 1.231732e-01	ci left: 7.254367e-03	ci right 8.213940e-03	k: 1004	n:130000
KS ci ratio: 3.758877e-02	ci left: 7.574706e-02	ci right 7.865644e-02	k: 10035	n:130000
CNBD1   130000 perm   38 sec   (3391 perm/sec)   p_kst 7.719231e-02   p_cons 7.723077e-03   p_joint 5.984615e-03

Joint ci ratio: 1.378497e-01	ci left: 5.346833e-03	ci right 6.145276e-03	k: 803	n:140000
Cons ci ratio: 1.179974e-01	ci left: 7.359693e-03	ci right 8.289437e-03	k: 1094	n:140000
KS ci ratio: 3.623599e-02	ci left: 7.574332e-02	ci right 7.854565e-02	k: 10799	n:140000
CNBD1   140000 perm   42 sec   (3357 perm/sec)   p_kst 7.713571e-02   p_cons 7.814286e-03   p_joint 5.735714e-03

Joint ci ratio: 1.349540e-01	ci left: 5.215724e-03	ci right 5.976912e-03	k: 838	n:150000
Cons ci ratio: 1.136655e-01	ci left: 7.419310e-03	ci right 8.319869e-03	k: 1179	n:150000
KS ci ratio: 3.502769e-02	ci left: 7.570864e-02	ci right 7.841440e-02	k: 11558	n:150000
CNBD1   150000 perm   45 sec   (3332 perm/sec)   p_kst 7.705333e-02   p_cons 7.860000e-03   p_joint 5.586667e-03

Joint ci ratio: 1.325382e-01	ci left: 5.076984e-03	ci right 5.803614e-03	k: 869	n:160000
Cons ci ratio: 1.098657e-01	ci left: 7.459861e-03	ci right 8.333112e-03	k: 1262	n:160000
KS ci ratio: 3.398655e-02	ci left: 7.545642e-02	ci right 7.807144e-02	k: 12281	n:160000
CNBD1   160000 perm   49 sec   (3288 perm/sec)   p_kst 7.675625e-02   p_cons 7.887500e-03   p_joint 5.431250e-03

Joint ci ratio: 1.279131e-01	ci left: 5.142557e-03	ci right 5.850939e-03	k: 933	n:170000
Cons ci ratio: 1.064232e-01	ci left: 7.496084e-03	ci right 8.344356e-03	k: 1345	n:170000
KS ci ratio: 3.302065e-02	ci left: 7.528750e-02	ci right 7.782108e-02	k: 13013	n:170000
CNBD1   170000 perm   52 sec   (3251 perm/sec)   p_kst 7.654706e-02   p_cons 7.911765e-03   p_joint 5.488235e-03

Joint ci ratio: 1.257193e-01	ci left: 5.034358e-03	ci right 5.715055e-03	k: 966	n:180000
Cons ci ratio: 1.032124e-01	ci left: 7.539486e-03	ci right 8.365368e-03	k: 1430	n:180000
KS ci ratio: 3.204818e-02	ci left: 7.550777e-02	ci right 7.797255e-02	k: 13812	n:180000
CNBD1   180000 perm   56 sec   (3215 perm/sec)   p_kst 7.673333e-02   p_cons 7.944444e-03   p_joint 5.366667e-03

Joint ci ratio: 1.195559e-01	ci left: 5.289814e-03	ci right 5.967509e-03	k: 1068	n:190000
Cons ci ratio: 1.005099e-01	ci left: 7.542740e-03	ci right 8.346067e-03	k: 1508	n:190000
KS ci ratio: 3.123448e-02	ci left: 7.535572e-02	ci right 7.775196e-02	k: 14544	n:190000
CNBD1   190000 perm   60 sec   (3189 perm/sec)   p_kst 7.654737e-02   p_cons 7.936842e-03   p_joint 5.621053e-03

Joint ci ratio: 1.166989e-01	ci left: 5.282492e-03	ci right 5.941962e-03	k: 1121	n:200000
Cons ci ratio: 9.816514e-02	ci left: 7.521530e-03	ci right 8.302834e-03	k: 1581	n:200000
KS ci ratio: 3.048084e-02	ci left: 7.521464e-02	ci right 7.754766e-02	k: 15275	n:200000
CNBD1   200000 perm   63 sec   (3163 perm/sec)   p_kst 7.637500e-02   p_cons 7.905000e-03   p_joint 5.605000e-03

Joint ci ratio: 1.151766e-01	ci left: 5.169641e-03	ci right 5.806030e-03	k: 1151	n:210000
Cons ci ratio: 9.612363e-02	ci left: 7.479296e-03	ci right 8.239144e-03	k: 1649	n:210000
KS ci ratio: 2.974807e-02	ci left: 7.523424e-02	ci right 7.751081e-02	k: 16037	n:210000
CNBD1   210000 perm   67 sec   (3137 perm/sec)   p_kst 7.636667e-02   p_cons 7.852381e-03   p_joint 5.480952e-03

Joint ci ratio: 1.129935e-01	ci left: 5.133361e-03	ci right 5.752507e-03	k: 1196	n:220000
Cons ci ratio: 9.390188e-02	ci left: 7.489888e-03	ci right 8.232257e-03	k: 1728	n:220000
KS ci ratio: 2.904233e-02	ci left: 7.536555e-02	ci right 7.759108e-02	k: 16824	n:220000
CNBD1   220000 perm   71 sec   (3106 perm/sec)   p_kst 7.647273e-02   p_cons 7.854545e-03   p_joint 5.436364e-03

Joint ci ratio: 1.123950e-01	ci left: 4.965075e-03	ci right 5.560541e-03	k: 1209	n:230000
Cons ci ratio: 9.208441e-02	ci left: 7.457258e-03	ci right 8.181315e-03	k: 1797	n:230000
KS ci ratio: 2.844581e-02	ci left: 7.518366e-02	ci right 7.735747e-02	k: 17541	n:230000
CNBD1   230000 perm   75 sec   (3077 perm/sec)   p_kst 7.626522e-02   p_cons 7.813043e-03   p_joint 5.256522e-03

Joint ci ratio: 9.473645e-02	ci left: 6.747625e-03	ci right 7.422694e-03	k: 1699	n:240000
Cons ci ratio: 9.019826e-02	ci left: 7.455987e-03	ci right 8.164310e-03	k: 1873	n:240000
KS ci ratio: 2.785240e-02	ci left: 7.517883e-02	ci right 7.730642e-02	k: 18297	n:240000
CNBD1   240000 perm   79 sec   (3049 perm/sec)   p_kst 7.623750e-02   p_cons 7.804167e-03   p_joint 7.079167e-03

Outputting figure to mutsig2_images.part000000000040/CNBD1.8_1355_240000_0.076237_0.0078042_0.0070792.png
                gene_name: CNBD1
               theta_stop: 0.095 
                    nperm: 240000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.0078 
      ci_cons_bounds_left: 0.0075 
     ci_cons_bounds_right: 0.0082 
                  p_joint: 0.0071 
     ci_joint_bounds_left: 0.0067 
    ci_joint_bounds_right: 0.0074 

Current progress: 29 percent done.
CNTN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.225767e-02	ci left: 7.476605e-01	ci right 7.645900e-01	k: 7562	n:10000
Cons ci ratio: 2.919994e-02	ci left: 6.336195e-01	ci right 6.524971e-01	k: 6431	n:10000
KS ci ratio: 3.654068e-02	ci left: 5.251652e-01	ci right 5.448144e-01	k: 5350	n:10000
CNTN5   10000 perm   2 sec   (4531 perm/sec)   p_kst 5.350000e-01   p_cons 6.431000e-01   p_joint 7.562000e-01

Outputting figure to mutsig2_images.part000000000040/CNTN5.8_3395_10000_0.535_0.6431_0.7562.png
                gene_name: CNTN5
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 31 percent done.
CNGB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.291121e-02	ci left: 1.440348e-01	ci right 1.581691e-01	k: 1510	n:10000
Cons ci ratio: 1.584068e-01	ci left: 5.311294e-02	ci right 6.234681e-02	k: 576	n:10000
KS ci ratio: 3.358024e-02	ci left: 5.669450e-01	ci right 5.864103e-01	k: 5767	n:10000
CNGB1   10000 perm   2 sec   (4573 perm/sec)   p_kst 5.767000e-01   p_cons 5.760000e-02   p_joint 1.510000e-01

Joint ci ratio: 6.287981e-02	ci left: 1.575597e-01	ci right 1.678386e-01	k: 3253	n:20000
Cons ci ratio: 1.058684e-01	ci left: 6.074404e-02	ci right 6.758334e-02	k: 1282	n:20000
KS ci ratio: 2.430275e-02	ci left: 5.584458e-01	ci right 5.722352e-01	k: 11307	n:20000
CNGB1   20000 perm   5 sec   (4047 perm/sec)   p_kst 5.653500e-01   p_cons 6.410000e-02   p_joint 1.626500e-01

Joint ci ratio: 5.160682e-02	ci left: 1.571212e-01	ci right 1.654778e-01	k: 4838	n:30000
Cons ci ratio: 8.987175e-02	ci left: 5.694711e-02	ci right 6.233856e-02	k: 1788	n:30000
KS ci ratio: 1.910724e-02	ci left: 5.782309e-01	ci right 5.894195e-01	k: 17515	n:30000
CNGB1   30000 perm   8 sec   (3731 perm/sec)   p_kst 5.838333e-01   p_cons 5.960000e-02   p_joint 1.612667e-01

Outputting figure to mutsig2_images.part000000000040/CNGB1.7_3914_30000_0.58383_0.0596_0.16127.png
                gene_name: CNGB1
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 32 percent done.
CNTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.257205e-01	ci left: 8.300372e-02	ci right 9.423727e-02	k: 885	n:10000
Cons ci ratio: 1.771079e-02	ci left: 8.230004e-01	ci right 8.378066e-01	k: 8305	n:10000
KS ci ratio: 2.750894e-01	ci left: 1.716007e-02	ci right 2.272454e-02	k: 198	n:10000
CNTN2   10000 perm   2 sec   (5083 perm/sec)   p_kst 1.980000e-02   p_cons 8.305000e-01   p_joint 8.850000e-02

Joint ci ratio: 1.005682e-01	ci left: 6.703871e-02	ci right 7.418673e-02	k: 1411	n:20000
Cons ci ratio: 1.250732e-02	ci left: 8.255815e-01	ci right 8.360222e-01	k: 16617	n:20000
KS ci ratio: 1.970633e-01	ci left: 1.748601e-02	ci right 2.135550e-02	k: 387	n:20000
CNTN2   20000 perm   4 sec   (4585 perm/sec)   p_kst 1.935000e-02   p_cons 8.308500e-01   p_joint 7.055000e-02

Joint ci ratio: 9.959686e-02	ci left: 4.664946e-02	ci right 5.157167e-02	k: 1472	n:30000
Cons ci ratio: 1.015204e-02	ci left: 8.282256e-01	ci right 8.367099e-01	k: 24975	n:30000
KS ci ratio: 1.632055e-01	ci left: 1.732516e-02	ci right 2.043567e-02	k: 565	n:30000
CNTN2   30000 perm   7 sec   (4392 perm/sec)   p_kst 1.883333e-02   p_cons 8.325000e-01   p_joint 4.906667e-02

Joint ci ratio: 8.953876e-02	ci left: 4.367401e-02	ci right 4.779226e-02	k: 1828	n:40000
Cons ci ratio: 8.617917e-03	ci left: 8.343522e-01	ci right 8.415986e-01	k: 33520	n:40000
KS ci ratio: 1.363314e-01	ci left: 1.886790e-02	ci right 2.165236e-02	k: 809	n:40000
CNTN2   40000 perm   10 sec   (4177 perm/sec)   p_kst 2.022500e-02   p_cons 8.380000e-01   p_joint 4.570000e-02

Joint ci ratio: 8.482727e-02	ci left: 3.921986e-02	ci right 4.271369e-02	k: 2047	n:50000
Cons ci ratio: 7.705790e-03	ci left: 8.348215e-01	ci right 8.412992e-01	k: 41904	n:50000
KS ci ratio: 1.228396e-01	ci left: 1.873260e-02	ci right 2.120357e-02	k: 997	n:50000
CNTN2   50000 perm   12 sec   (4025 perm/sec)   p_kst 1.994000e-02   p_cons 8.380800e-01   p_joint 4.094000e-02

Joint ci ratio: 7.239912e-02	ci left: 4.489431e-02	ci right 4.828306e-02	k: 2794	n:60000
Cons ci ratio: 7.021752e-03	ci left: 8.355980e-01	ci right 8.415026e-01	k: 50314	n:60000
KS ci ratio: 1.108961e-01	ci left: 1.926757e-02	ci right 2.154582e-02	k: 1223	n:60000
CNTN2   60000 perm   15 sec   (3920 perm/sec)   p_kst 2.038333e-02   p_cons 8.385667e-01   p_joint 4.656667e-02

Joint ci ratio: 7.314345e-02	ci left: 3.797080e-02	ci right 4.086754e-02	k: 2758	n:70000
Cons ci ratio: 6.524743e-03	ci left: 8.348179e-01	ci right 8.402969e-01	k: 58630	n:70000
KS ci ratio: 1.029648e-01	ci left: 1.924022e-02	ci right 2.134266e-02	k: 1419	n:70000
CNTN2   70000 perm   18 sec   (3828 perm/sec)   p_kst 2.027143e-02   p_cons 8.375714e-01   p_joint 3.940000e-02

Joint ci ratio: 5.565637e-02	ci left: 5.676015e-02	ci right 6.002196e-02	k: 4670	n:80000
Cons ci ratio: 6.098481e-03	ci left: 8.352145e-01	ci right 8.403360e-01	k: 67023	n:80000
KS ci ratio: 9.594905e-02	ci left: 1.945600e-02	ci right 2.142900e-02	k: 1634	n:80000
CNTN2   80000 perm   21 sec   (3766 perm/sec)   p_kst 2.042500e-02   p_cons 8.377875e-01   p_joint 5.837500e-02

Outputting figure to mutsig2_images.part000000000040/CNTN2.7_3211_80000_0.020425_0.83779_0.058375.png
                gene_name: CNTN2
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.060 

Current progress: 34 percent done.
CNTNAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.443225e-01	ci left: 6.372193e-02	ci right 7.373108e-02	k: 686	n:10000
Cons ci ratio: 3.600075e-02	ci left: 5.325743e-01	ci right 5.522010e-01	k: 5424	n:10000
KS ci ratio: 2.702786e-01	ci left: 1.781300e-02	ci right 2.347108e-02	k: 205	n:10000
CNTNAP1   10000 perm   2 sec   (4731 perm/sec)   p_kst 2.050000e-02   p_cons 5.424000e-01   p_joint 6.860000e-02

Joint ci ratio: 1.033106e-01	ci left: 6.367065e-02	ci right 7.065583e-02	k: 1342	n:20000
Cons ci ratio: 2.567162e-02	ci left: 5.313106e-01	ci right 5.451782e-01	k: 10765	n:20000
KS ci ratio: 1.942734e-01	ci left: 1.800953e-02	ci right 2.193178e-02	k: 398	n:20000
CNTNAP1   20000 perm   5 sec   (4250 perm/sec)   p_kst 1.990000e-02   p_cons 5.382500e-01   p_joint 6.710000e-02

Joint ci ratio: 8.135220e-02	ci left: 6.890364e-02	ci right 7.477960e-02	k: 2154	n:30000
Cons ci ratio: 2.085537e-02	ci left: 5.351072e-01	ci right 5.464182e-01	k: 16223	n:30000
KS ci ratio: 1.569605e-01	ci left: 1.876615e-02	ci right 2.199434e-02	k: 610	n:30000
CNTNAP1   30000 perm   7 sec   (4010 perm/sec)   p_kst 2.033333e-02   p_cons 5.407667e-01   p_joint 7.180000e-02

Joint ci ratio: 7.547585e-02	ci left: 6.078564e-02	ci right 6.557801e-02	k: 2526	n:40000
Cons ci ratio: 1.808573e-02	ci left: 5.352006e-01	ci right 5.449936e-01	k: 21604	n:40000
KS ci ratio: 1.352280e-01	ci left: 1.918207e-02	ci right 2.198814e-02	k: 822	n:40000
CNTNAP1   40000 perm   10 sec   (3906 perm/sec)   p_kst 2.055000e-02   p_cons 5.401000e-01   p_joint 6.315000e-02

Joint ci ratio: 8.040446e-02	ci left: 4.355246e-02	ci right 4.722055e-02	k: 2268	n:50000
Cons ci ratio: 1.618690e-02	ci left: 5.353991e-01	ci right 5.441563e-01	k: 26989	n:50000
KS ci ratio: 1.179296e-01	ci left: 2.034360e-02	ci right 2.291236e-02	k: 1080	n:50000
CNTNAP1   50000 perm   13 sec   (3821 perm/sec)   p_kst 2.160000e-02   p_cons 5.397800e-01   p_joint 4.536000e-02

Joint ci ratio: 6.878441e-02	ci left: 4.958099e-02	ci right 5.312924e-02	k: 3080	n:60000
Cons ci ratio: 1.480083e-02	ci left: 5.349679e-01	ci right 5.429616e-01	k: 32338	n:60000
KS ci ratio: 1.092226e-01	ci left: 1.986759e-02	ci right 2.217907e-02	k: 1260	n:60000
CNTNAP1   60000 perm   16 sec   (3752 perm/sec)   p_kst 2.100000e-02   p_cons 5.389667e-01   p_joint 5.133333e-02

Joint ci ratio: 7.257032e-02	ci left: 3.856029e-02	ci right 4.147799e-02	k: 2800	n:70000
Cons ci ratio: 1.370360e-02	ci left: 5.352414e-01	ci right 5.426411e-01	k: 37726	n:70000
KS ci ratio: 1.009514e-01	ci left: 2.002022e-02	ci right 2.216259e-02	k: 1475	n:70000
CNTNAP1   70000 perm   19 sec   (3698 perm/sec)   p_kst 2.107143e-02   p_cons 5.389429e-01   p_joint 4.000000e-02

Joint ci ratio: 6.556176e-02	ci left: 4.137086e-02	ci right 4.418741e-02	k: 3421	n:80000
Cons ci ratio: 1.334371e-02	ci left: 5.154683e-01	ci right 5.224053e-01	k: 41515	n:80000
KS ci ratio: 9.673721e-02	ci left: 1.913868e-02	ci right 2.109634e-02	k: 1608	n:80000
CNTNAP1   80000 perm   22 sec   (3646 perm/sec)   p_kst 2.010000e-02   p_cons 5.189375e-01   p_joint 4.276250e-02

Outputting figure to mutsig2_images.part000000000040/CNTNAP1.7_4251_80000_0.0201_0.51894_0.042763.png
                gene_name: CNTNAP1
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.044 

Current progress: 35 percent done.
CNTROB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.432059e-02	ci left: 8.758224e-01	ci right 8.885540e-01	k: 8823	n:10000
Cons ci ratio: 9.066260e-03	ci left: 9.448175e-01	ci right 9.535185e-01	k: 9493	n:10000
KS ci ratio: 2.328950e-02	ci left: 7.303745e-01	ci right 7.476861e-01	k: 7391	n:10000
CNTROB   10000 perm   2 sec   (4551 perm/sec)   p_kst 7.391000e-01   p_cons 9.493000e-01   p_joint 8.823000e-01

Outputting figure to mutsig2_images.part000000000040/CNTROB.7_2854_10000_0.7391_0.9493_0.8823.png
                gene_name: CNTROB
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 37 percent done.
CLYBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.124049e-02	ci left: 2.240520e-01	ci right 2.407042e-01	k: 2323	n:10000
Cons ci ratio: 1.262686e-01	ci left: 8.232386e-02	ci right 9.351756e-02	k: 878	n:10000
KS ci ratio: 8.377868e-02	ci left: 1.720224e-01	ci right 1.871647e-01	k: 1795	n:10000
CLYBL   10000 perm   2 sec   (5452 perm/sec)   p_kst 1.795000e-01   p_cons 8.780000e-02   p_joint 2.323000e-01

Joint ci ratio: 6.958259e-02	ci left: 1.321641e-01	ci right 1.417417e-01	k: 2738	n:20000
Cons ci ratio: 9.438160e-02	ci left: 7.564046e-02	ci right 8.318235e-02	k: 1587	n:20000
KS ci ratio: 6.024545e-02	ci left: 1.694107e-01	ci right 1.799840e-01	k: 3493	n:20000
CLYBL   20000 perm   4 sec   (4902 perm/sec)   p_kst 1.746500e-01   p_cons 7.935000e-02   p_joint 1.369000e-01

Outputting figure to mutsig2_images.part000000000040/CLYBL.6_1055_20000_0.17465_0.07935_0.1369.png
                gene_name: CLYBL
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 39 percent done.
CNGA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.536256e-02	ci left: 8.600854e-01	ci right 8.735001e-01	k: 8669	n:10000
Cons ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
KS ci ratio: 1.332298e-02	ci left: 8.903638e-01	ci right 9.024042e-01	k: 8965	n:10000
CNGA1   10000 perm   2 sec   (4752 perm/sec)   p_kst 8.965000e-01   p_cons 5.242000e-01   p_joint 8.669000e-01

Outputting figure to mutsig2_images.part000000000040/CNGA1.6_2316_10000_0.8965_0.5242_0.8669.png
                gene_name: CNGA1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 40 percent done.
CNGA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.852255e-02	ci left: 8.097874e-01	ci right 8.250272e-01	k: 8175	n:10000
KS ci ratio: 9.706602e-03	ci left: 9.375495e-01	ci right 9.467908e-01	k: 9423	n:10000
CNGA3   10000 perm   2 sec   (5062 perm/sec)   p_kst 9.423000e-01   p_cons 8.175000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNGA3.6_2113_10000_0.9423_0.8175_1.png
                gene_name: CNGA3
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
CNGA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.225664e-02	ci left: 2.749777e-01	ci right 2.927484e-01	k: 2838	n:10000
Cons ci ratio: 9.759937e-02	ci left: 1.320796e-01	ci right 1.457315e-01	k: 1388	n:10000
KS ci ratio: 6.236399e-02	ci left: 2.742845e-01	ci right 2.920420e-01	k: 2831	n:10000
CNGA4   10000 perm   2 sec   (5243 perm/sec)   p_kst 2.831000e-01   p_cons 1.388000e-01   p_joint 2.838000e-01

Outputting figure to mutsig2_images.part000000000040/CNGA4.6_1752_10000_0.2831_0.1388_0.2838.png
                gene_name: CNGA4
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 44 percent done.
CNNM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.113205e-01	ci left: 7.153353e-03	ci right 1.094096e-02	k: 89	n:10000
Cons ci ratio: 9.715510e-03	ci left: 9.374458e-01	ci right 9.466946e-01	k: 9422	n:10000
KS ci ratio: 7.145810e-01	ci left: 1.943009e-03	ci right 4.162249e-03	k: 29	n:10000
CNNM2   10000 perm   2 sec   (4704 perm/sec)   p_kst 2.900000e-03   p_cons 9.422000e-01   p_joint 8.900000e-03

Joint ci ratio: 1.942734e-01	ci left: 1.800953e-02	ci right 2.193178e-02	k: 398	n:20000
Cons ci ratio: 7.244127e-03	ci left: 9.326216e-01	ci right 9.394510e-01	k: 18722	n:20000
KS ci ratio: 5.052976e-01	ci left: 2.246412e-03	ci right 3.803657e-03	k: 59	n:20000
CNNM2   20000 perm   5 sec   (4271 perm/sec)   p_kst 2.950000e-03   p_cons 9.361000e-01   p_joint 1.990000e-02

Joint ci ratio: 2.086053e-01	ci left: 1.041914e-02	ci right 1.287680e-02	k: 348	n:30000
Cons ci ratio: 5.942186e-03	ci left: 9.326953e-01	ci right 9.382867e-01	k: 28066	n:30000
KS ci ratio: 3.994361e-01	ci left: 2.562755e-03	ci right 3.869722e-03	k: 95	n:30000
CNNM2   30000 perm   7 sec   (4221 perm/sec)   p_kst 3.166667e-03   p_cons 9.355333e-01   p_joint 1.160000e-02

Joint ci ratio: 2.113705e-01	ci left: 7.623672e-03	ci right 9.448754e-03	k: 340	n:40000
Cons ci ratio: 5.153652e-03	ci left: 9.328959e-01	ci right 9.377407e-01	k: 37414	n:40000
KS ci ratio: 3.459232e-01	ci left: 2.647521e-03	ci right 3.776509e-03	k: 127	n:40000
CNNM2   40000 perm   10 sec   (4060 perm/sec)   p_kst 3.175000e-03   p_cons 9.353500e-01   p_joint 8.500000e-03

Joint ci ratio: 1.567065e-01	ci left: 1.139073e-02	ci right 1.334650e-02	k: 617	n:50000
Cons ci ratio: 4.610579e-03	ci left: 9.331287e-01	ci right 9.374606e-01	k: 46766	n:50000
KS ci ratio: 3.094039e-01	ci left: 2.705539e-03	ci right 3.713506e-03	k: 159	n:50000
CNNM2   50000 perm   13 sec   (3958 perm/sec)   p_kst 3.180000e-03   p_cons 9.353200e-01   p_joint 1.234000e-02

Joint ci ratio: 1.540002e-01	ci left: 9.860094e-03	ci right 1.152108e-02	k: 640	n:60000
Cons ci ratio: 4.197876e-03	ci left: 9.336402e-01	ci right 9.375842e-01	k: 56138	n:60000
KS ci ratio: 2.795400e-01	ci left: 2.810424e-03	ci right 3.738651e-03	k: 195	n:60000
CNNM2   60000 perm   15 sec   (3929 perm/sec)   p_kst 3.250000e-03   p_cons 9.356333e-01   p_joint 1.066667e-02

Joint ci ratio: 1.490398e-01	ci left: 9.055967e-03	ci right 1.052795e-02	k: 684	n:70000
Cons ci ratio: 3.895787e-03	ci left: 9.334958e-01	ci right 9.371537e-01	k: 65474	n:70000
KS ci ratio: 2.632693e-01	ci left: 2.741781e-03	ci right 3.585950e-03	k: 220	n:70000
CNNM2   70000 perm   18 sec   (3893 perm/sec)   p_kst 3.142857e-03   p_cons 9.353429e-01   p_joint 9.771429e-03

Joint ci ratio: 1.554351e-01	ci left: 7.274142e-03	ci right 8.511946e-03	k: 630	n:80000
Cons ci ratio: 3.645053e-03	ci left: 9.335859e-01	ci right 9.370074e-01	k: 74825	n:80000
KS ci ratio: 2.404030e-01	ci left: 2.914443e-03	ci right 3.722240e-03	k: 264	n:80000
CNNM2   80000 perm   21 sec   (3849 perm/sec)   p_kst 3.300000e-03   p_cons 9.353125e-01   p_joint 7.875000e-03

Joint ci ratio: 1.468458e-01	ci left: 7.278431e-03	ci right 8.442515e-03	k: 706	n:90000
Cons ci ratio: 3.441331e-03	ci left: 9.335159e-01	ci right 9.367449e-01	k: 84163	n:90000
KS ci ratio: 2.386479e-01	ci left: 2.632345e-03	ci right 3.355833e-03	k: 268	n:90000
CNNM2   90000 perm   24 sec   (3802 perm/sec)   p_kst 2.977778e-03   p_cons 9.351444e-01   p_joint 7.844444e-03

Joint ci ratio: 1.411841e-01	ci left: 7.109648e-03	ci right 8.199201e-03	k: 764	n:100000
Cons ci ratio: 3.265370e-03	ci left: 9.335757e-01	ci right 9.366390e-01	k: 93512	n:100000
KS ci ratio: 2.248556e-01	ci left: 2.689395e-03	ci right 3.379930e-03	k: 302	n:100000
CNNM2   100000 perm   27 sec   (3755 perm/sec)   p_kst 3.020000e-03   p_cons 9.351200e-01   p_joint 7.640000e-03

Joint ci ratio: 1.469516e-01	ci left: 5.954777e-03	ci right 6.907891e-03	k: 706	n:110000
Cons ci ratio: 3.112973e-03	ci left: 9.336649e-01	ci right 9.365848e-01	k: 102865	n:110000
KS ci ratio: 2.132077e-01	ci left: 2.737056e-03	ci right 3.398666e-03	k: 336	n:110000
CNNM2   110000 perm   30 sec   (3670 perm/sec)   p_kst 3.054545e-03   p_cons 9.351364e-01   p_joint 6.418182e-03

Joint ci ratio: 1.429776e-01	ci left: 5.779751e-03	ci right 6.677696e-03	k: 746	n:120000
Cons ci ratio: 2.985825e-03	ci left: 9.335063e-01	ci right 9.363060e-01	k: 112190	n:120000
KS ci ratio: 2.018408e-01	ci left: 2.817100e-03	ci right 3.457284e-03	k: 375	n:120000
CNNM2   120000 perm   33 sec   (3615 perm/sec)   p_kst 3.125000e-03   p_cons 9.349167e-01   p_joint 6.216667e-03

Joint ci ratio: 1.263810e-01	ci left: 6.881672e-03	ci right 7.817428e-03	k: 954	n:130000
Cons ci ratio: 2.879571e-03	ci left: 9.330950e-01	ci right 9.357933e-01	k: 121479	n:130000
KS ci ratio: 1.944820e-01	ci left: 2.812411e-03	ci right 3.425469e-03	k: 404	n:130000
CNNM2   130000 perm   37 sec   (3558 perm/sec)   p_kst 3.107692e-03   p_cons 9.344538e-01   p_joint 7.338462e-03

Joint ci ratio: 1.223520e-01	ci left: 6.833036e-03	ci right 7.730410e-03	k: 1018	n:140000
Cons ci ratio: 2.773446e-03	ci left: 9.332059e-01	ci right 9.358047e-01	k: 130832	n:140000
KS ci ratio: 1.900829e-01	ci left: 2.740696e-03	ci right 3.323046e-03	k: 423	n:140000
CNNM2   140000 perm   40 sec   (3513 perm/sec)   p_kst 3.021429e-03   p_cons 9.345143e-01   p_joint 7.271429e-03

Joint ci ratio: 1.178659e-01	ci left: 6.888357e-03	ci right 7.757517e-03	k: 1097	n:150000
Cons ci ratio: 2.676059e-03	ci left: 9.334044e-01	ci right 9.359121e-01	k: 140200	n:150000
KS ci ratio: 1.811128e-01	ci left: 2.831349e-03	ci right 3.401459e-03	k: 466	n:150000
CNNM2   150000 perm   43 sec   (3475 perm/sec)   p_kst 3.106667e-03   p_cons 9.346667e-01   p_joint 7.313333e-03

Joint ci ratio: 1.066365e-01	ci left: 7.928183e-03	ci right 8.827268e-03	k: 1339	n:160000
Cons ci ratio: 2.590900e-03	ci left: 9.334532e-01	ci right 9.358810e-01	k: 149548	n:160000
KS ci ratio: 1.734738e-01	ci left: 2.905254e-03	ci right 3.462989e-03	k: 508	n:160000
CNNM2   160000 perm   47 sec   (3427 perm/sec)   p_kst 3.175000e-03   p_cons 9.346750e-01   p_joint 8.368750e-03

Joint ci ratio: 1.056739e-01	ci left: 7.604906e-03	ci right 8.459059e-03	k: 1364	n:170000
Cons ci ratio: 2.517621e-03	ci left: 9.332898e-01	ci right 9.356483e-01	k: 158861	n:170000
KS ci ratio: 1.684213e-01	ci left: 2.908909e-03	ci right 3.449430e-03	k: 539	n:170000
CNNM2   170000 perm   50 sec   (3381 perm/sec)   p_kst 3.170588e-03   p_cons 9.344765e-01   p_joint 8.023529e-03

Joint ci ratio: 1.044708e-01	ci left: 7.355467e-03	ci right 8.171618e-03	k: 1396	n:180000
Cons ci ratio: 2.442548e-03	ci left: 9.335321e-01	ci right 9.358206e-01	k: 168243	n:180000
KS ci ratio: 1.627881e-01	ci left: 2.949671e-03	ci right 3.477640e-03	k: 577	n:180000
CNNM2   180000 perm   54 sec   (3319 perm/sec)   p_kst 3.205556e-03   p_cons 9.346833e-01   p_joint 7.755556e-03

Joint ci ratio: 1.031978e-01	ci left: 7.147724e-03	ci right 7.930572e-03	k: 1431	n:190000
Cons ci ratio: 2.379634e-03	ci left: 9.334472e-01	ci right 9.356763e-01	k: 177568	n:190000
KS ci ratio: 1.595135e-01	ci left: 2.915643e-03	ci right 3.426018e-03	k: 601	n:190000
CNNM2   190000 perm   58 sec   (3280 perm/sec)   p_kst 3.163158e-03   p_cons 9.345684e-01   p_joint 7.531579e-03

Joint ci ratio: 1.023570e-01	ci left: 6.907209e-03	ci right 7.657179e-03	k: 1455	n:200000
Cons ci ratio: 2.317830e-03	ci left: 9.335581e-01	ci right 9.357293e-01	k: 186930	n:200000
KS ci ratio: 1.564289e-01	ci left: 2.885114e-03	ci right 3.379461e-03	k: 625	n:200000
CNNM2   200000 perm   62 sec   (3239 perm/sec)   p_kst 3.125000e-03   p_cons 9.346500e-01   p_joint 7.275000e-03

Joint ci ratio: 1.016394e-01	ci left: 6.675702e-03	ci right 7.395149e-03	k: 1476	n:210000
Cons ci ratio: 2.263686e-03	ci left: 9.334910e-01	ci right 9.356112e-01	k: 196257	n:210000
KS ci ratio: 1.522298e-01	ci left: 2.907961e-03	ci right 3.391629e-03	k: 660	n:210000
CNNM2   210000 perm   66 sec   (3197 perm/sec)   p_kst 3.142857e-03   p_cons 9.345571e-01   p_joint 7.028571e-03

Joint ci ratio: 9.931334e-02	ci left: 6.682448e-03	ci right 7.385180e-03	k: 1546	n:220000
Cons ci ratio: 2.210945e-03	ci left: 9.335543e-01	ci right 9.356251e-01	k: 205611	n:220000
KS ci ratio: 1.480320e-01	ci left: 2.942024e-03	ci right 3.416670e-03	k: 698	n:220000
CNNM2   220000 perm   70 sec   (3165 perm/sec)   p_kst 3.172727e-03   p_cons 9.345955e-01   p_joint 7.027273e-03

Joint ci ratio: 1.066935e-01	ci left: 5.523355e-03	ci right 6.150066e-03	k: 1341	n:230000
Cons ci ratio: 2.164647e-03	ci left: 9.334462e-01	ci right 9.354733e-01	k: 214927	n:230000
KS ci ratio: 1.442614e-01	ci left: 2.969100e-03	ci right 3.434863e-03	k: 735	n:230000
CNNM2   230000 perm   73 sec   (3134 perm/sec)   p_kst 3.195652e-03   p_cons 9.344652e-01   p_joint 5.830435e-03

Joint ci ratio: 1.085522e-01	ci left: 5.110703e-03	ci right 5.701338e-03	k: 1296	n:240000
Cons ci ratio: 2.118683e-03	ci left: 9.334903e-01	ci right 9.354742e-01	k: 224277	n:240000
KS ci ratio: 1.420615e-01	ci left: 2.937785e-03	ci right 3.391012e-03	k: 758	n:240000
CNNM2   240000 perm   77 sec   (3103 perm/sec)   p_kst 3.158333e-03   p_cons 9.344875e-01   p_joint 5.400000e-03

Joint ci ratio: 1.069593e-01	ci left: 5.058063e-03	ci right 5.633497e-03	k: 1335	n:250000
Cons ci ratio: 2.077561e-03	ci left: 9.334104e-01	ci right 9.353555e-01	k: 233597	n:250000
KS ci ratio: 1.388942e-01	ci left: 2.955355e-03	ci right 3.400286e-03	k: 793	n:250000
CNNM2   250000 perm   81 sec   (3072 perm/sec)   p_kst 3.172000e-03   p_cons 9.343880e-01   p_joint 5.340000e-03

Joint ci ratio: 9.146271e-02	ci left: 6.694390e-03	ci right 7.339750e-03	k: 1823	n:260000
Cons ci ratio: 2.036504e-03	ci left: 9.334725e-01	ci right 9.353793e-01	k: 242952	n:260000
KS ci ratio: 1.355204e-01	ci left: 2.990257e-03	ci right 3.428625e-03	k: 833	n:260000
CNNM2   260000 perm   85 sec   (3041 perm/sec)   p_kst 3.203846e-03   p_cons 9.344308e-01   p_joint 7.011538e-03

Joint ci ratio: 9.155052e-02	ci left: 6.435553e-03	ci right 7.056587e-03	k: 1820	n:270000
Cons ci ratio: 1.997787e-03	ci left: 9.335304e-01	ci right 9.354010e-01	k: 252307	n:270000
KS ci ratio: 1.331473e-01	ci left: 2.986883e-03	ci right 3.416483e-03	k: 863	n:270000
CNNM2   270000 perm   90 sec   (3010 perm/sec)   p_kst 3.196296e-03   p_cons 9.344704e-01   p_joint 6.740741e-03

Joint ci ratio: 9.049236e-02	ci left: 6.355776e-03	ci right 6.961646e-03	k: 1863	n:280000
Cons ci ratio: 1.960626e-03	ci left: 9.336205e-01	ci right 9.354563e-01	k: 261672	n:280000
KS ci ratio: 1.307481e-01	ci left: 2.990722e-03	ci right 3.412521e-03	k: 895	n:280000
CNNM2   280000 perm   94 sec   (2980 perm/sec)   p_kst 3.196429e-03   p_cons 9.345429e-01   p_joint 6.653571e-03

Joint ci ratio: 9.185155e-02	ci left: 5.954593e-03	ci right 6.531203e-03	k: 1809	n:290000
Cons ci ratio: 1.924646e-03	ci left: 9.337566e-01	ci right 9.355589e-01	k: 271052	n:290000
KS ci ratio: 1.289629e-01	ci left: 2.970999e-03	ci right 3.383856e-03	k: 920	n:290000
CNNM2   290000 perm   98 sec   (2950 perm/sec)   p_kst 3.172414e-03   p_cons 9.346621e-01   p_joint 6.237931e-03

Joint ci ratio: 9.665099e-02	ci left: 5.189669e-03	ci right 5.719953e-03	k: 1635	n:300000
Cons ci ratio: 1.892173e-03	ci left: 9.337799e-01	ci right 9.355517e-01	k: 280401	n:300000
KS ci ratio: 1.270470e-01	ci left: 2.962309e-03	ci right 3.367383e-03	k: 948	n:300000
CNNM2   300000 perm   103 sec   (2921 perm/sec)   p_kst 3.160000e-03   p_cons 9.346700e-01   p_joint 5.450000e-03

Joint ci ratio: 9.503788e-02	ci left: 5.198577e-03	ci right 5.720411e-03	k: 1691	n:310000
Cons ci ratio: 1.860798e-03	ci left: 9.338344e-01	ci right 9.355768e-01	k: 289760	n:310000
KS ci ratio: 1.248937e-01	ci left: 2.969848e-03	ci right 3.368561e-03	k: 981	n:310000
CNNM2   310000 perm   107 sec   (2892 perm/sec)   p_kst 3.164516e-03   p_cons 9.347097e-01   p_joint 5.454839e-03

Joint ci ratio: 9.361069e-02	ci left: 5.194787e-03	ci right 5.707981e-03	k: 1743	n:320000
Cons ci ratio: 1.833792e-03	ci left: 9.336939e-01	ci right 9.354107e-01	k: 299058	n:320000
KS ci ratio: 1.225440e-01	ci left: 2.992118e-03	ci right 3.385714e-03	k: 1019	n:320000
CNNM2   320000 perm   112 sec   (2862 perm/sec)   p_kst 3.184375e-03   p_cons 9.345562e-01   p_joint 5.446875e-03

Joint ci ratio: 9.183552e-02	ci left: 5.238657e-03	ci right 5.745844e-03	k: 1811	n:330000
Cons ci ratio: 1.808053e-03	ci left: 9.335530e-01	ci right 9.352454e-01	k: 308353	n:330000
KS ci ratio: 1.204363e-01	ci left: 3.007225e-03	ci right 3.395520e-03	k: 1055	n:330000
CNNM2   330000 perm   116 sec   (2833 perm/sec)   p_kst 3.196970e-03   p_cons 9.344030e-01   p_joint 5.487879e-03

Joint ci ratio: 9.027843e-02	ci left: 5.265657e-03	ci right 5.766357e-03	k: 1874	n:340000
Cons ci ratio: 1.782505e-03	ci left: 9.334798e-01	ci right 9.351481e-01	k: 317668	n:340000
KS ci ratio: 1.184338e-01	ci left: 3.021497e-03	ci right 3.404694e-03	k: 1091	n:340000
CNNM2   340000 perm   121 sec   (2806 perm/sec)   p_kst 3.208824e-03   p_cons 9.343176e-01   p_joint 5.511765e-03

Joint ci ratio: 8.889022e-02	ci left: 5.280006e-03	ci right 5.773949e-03	k: 1933	n:350000
Cons ci ratio: 1.756331e-03	ci left: 9.335288e-01	ci right 9.351726e-01	k: 327024	n:350000
KS ci ratio: 1.164761e-01	ci left: 3.037779e-03	ci right 3.416234e-03	k: 1128	n:350000
CNNM2   350000 perm   126 sec   (2773 perm/sec)   p_kst 3.222857e-03   p_cons 9.343543e-01   p_joint 5.522857e-03

Joint ci ratio: 8.791973e-02	ci left: 5.250139e-03	ci right 5.735651e-03	k: 1976	n:360000
Cons ci ratio: 1.729786e-03	ci left: 9.336813e-01	ci right 9.353005e-01	k: 336418	n:360000
KS ci ratio: 1.151587e-01	ci left: 3.023525e-03	ci right 3.395654e-03	k: 1154	n:360000
CNNM2   360000 perm   131 sec   (2746 perm/sec)   p_kst 3.205556e-03   p_cons 9.344944e-01   p_joint 5.488889e-03

Joint ci ratio: 8.058886e-02	ci left: 6.097898e-03	ci right 6.612582e-03	k: 2350	n:370000
Cons ci ratio: 1.706059e-03	ci left: 9.337062e-01	ci right 9.353032e-01	k: 345768	n:370000
KS ci ratio: 1.136439e-01	ci left: 3.023194e-03	ci right 3.390060e-03	k: 1185	n:370000
CNNM2   370000 perm   136 sec   (2717 perm/sec)   p_kst 3.202703e-03   p_cons 9.345081e-01   p_joint 6.351351e-03

Joint ci ratio: 8.068202e-02	ci left: 5.924513e-03	ci right 6.425168e-03	k: 2345	n:380000
Cons ci ratio: 1.683680e-03	ci left: 9.337008e-01	ci right 9.352768e-01	k: 355107	n:380000
KS ci ratio: 1.092114e-01	ci left: 3.194361e-03	ci right 3.565907e-03	k: 1283	n:380000
CNNM2   380000 perm   141 sec   (2691 perm/sec)   p_kst 3.376316e-03   p_cons 9.344921e-01   p_joint 6.171053e-03

Joint ci ratio: 7.955347e-02	ci left: 5.940957e-03	ci right 6.435654e-03	k: 2412	n:390000
Cons ci ratio: 1.660489e-03	ci left: 9.338196e-01	ci right 9.353740e-01	k: 364494	n:390000
KS ci ratio: 1.077935e-01	ci left: 3.197268e-03	ci right 3.564018e-03	k: 1317	n:390000
CNNM2   390000 perm   146 sec   (2664 perm/sec)   p_kst 3.376923e-03   p_cons 9.346000e-01   p_joint 6.184615e-03

Joint ci ratio: 7.905040e-02	ci left: 5.868387e-03	ci right 6.353809e-03	k: 2443	n:400000
Cons ci ratio: 1.639199e-03	ci left: 9.338596e-01	ci right 9.353941e-01	k: 373852	n:400000
KS ci ratio: 1.067468e-01	ci left: 3.180591e-03	ci right 3.541663e-03	k: 1343	n:400000
CNNM2   400000 perm   152 sec   (2638 perm/sec)   p_kst 3.357500e-03   p_cons 9.346300e-01   p_joint 6.107500e-03

Joint ci ratio: 7.561556e-02	ci left: 6.265868e-03	ci right 6.760658e-03	k: 2669	n:410000
Cons ci ratio: 1.618868e-03	ci left: 9.338855e-01	ci right 9.354010e-01	k: 383205	n:410000
KS ci ratio: 1.054217e-01	ci left: 3.183742e-03	ci right 3.540407e-03	k: 1377	n:410000
CNNM2   410000 perm   157 sec   (2613 perm/sec)   p_kst 3.358537e-03   p_cons 9.346463e-01   p_joint 6.509756e-03

Joint ci ratio: 7.496032e-02	ci left: 6.226473e-03	ci right 6.713706e-03	k: 2716	n:420000
Cons ci ratio: 1.599680e-03	ci left: 9.338792e-01	ci right 9.353767e-01	k: 392545	n:420000
KS ci ratio: 1.040707e-01	ci left: 3.191408e-03	ci right 3.544070e-03	k: 1413	n:420000
CNNM2   420000 perm   162 sec   (2586 perm/sec)   p_kst 3.364286e-03   p_cons 9.346310e-01   p_joint 6.466667e-03

Joint ci ratio: 7.441670e-02	ci left: 6.172951e-03	ci right 6.652341e-03	k: 2756	n:430000
Cons ci ratio: 1.580227e-03	ci left: 9.339458e-01	ci right 9.354251e-01	k: 401916	n:430000
KS ci ratio: 1.029487e-01	ci left: 3.187416e-03	ci right 3.535609e-03	k: 1444	n:430000
CNNM2   430000 perm   168 sec   (2558 perm/sec)   p_kst 3.358140e-03   p_cons 9.346884e-01   p_joint 6.409302e-03

Joint ci ratio: 7.375214e-02	ci left: 6.144185e-03	ci right 6.616896e-03	k: 2806	n:440000
Cons ci ratio: 1.562511e-03	ci left: 9.339272e-01	ci right 9.353898e-01	k: 411251	n:440000
KS ci ratio: 1.018621e-01	ci left: 3.183624e-03	ci right 3.527513e-03	k: 1475	n:440000
CNNM2   440000 perm   174 sec   (2534 perm/sec)   p_kst 3.352273e-03   p_cons 9.346614e-01   p_joint 6.377273e-03

Joint ci ratio: 7.322121e-02	ci left: 6.097079e-03	ci right 6.562645e-03	k: 2847	n:450000
Cons ci ratio: 1.545350e-03	ci left: 9.339117e-01	ci right 9.353582e-01	k: 420587	n:450000
KS ci ratio: 1.011466e-01	ci left: 3.158357e-03	ci right 3.496977e-03	k: 1496	n:450000
CNNM2   450000 perm   179 sec   (2507 perm/sec)   p_kst 3.324444e-03   p_cons 9.346378e-01   p_joint 6.326667e-03

Joint ci ratio: 7.210124e-02	ci left: 6.154503e-03	ci right 6.616965e-03	k: 2936	n:460000
Cons ci ratio: 1.529449e-03	ci left: 9.338402e-01	ci right 9.352717e-01	k: 429897	n:460000
KS ci ratio: 9.959370e-02	ci left: 3.189308e-03	ci right 3.525691e-03	k: 1543	n:460000
CNNM2   460000 perm   185 sec   (2484 perm/sec)   p_kst 3.354348e-03   p_cons 9.345587e-01   p_joint 6.382609e-03

Outputting figure to mutsig2_images.part000000000040/CNNM2.6_2702_460000_0.0033543_0.93456_0.0063826.png
                gene_name: CNNM2
               theta_stop: 0.100 
                    nperm: 460000 
                     p_ks: 0.0034 
        ci_ks_bounds_left: 0.0032 
       ci_ks_bounds_right: 0.0035 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.0064 
     ci_joint_bounds_left: 0.0062 
    ci_joint_bounds_right: 0.0066 

Current progress: 45 percent done.
CNDP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
Cons ci ratio: 3.159811e-02	ci left: 5.964436e-01	ci right 6.156946e-01	k: 6061	n:10000
KS ci ratio: 1.404114e-01	ci left: 6.720239e-02	ci right 7.744844e-02	k: 722	n:10000
CNDP2   10000 perm   2 sec   (5692 perm/sec)   p_kst 7.220000e-02   p_cons 6.061000e-01   p_joint 1.309000e-01

Joint ci ratio: 6.986361e-02	ci left: 1.312282e-01	ci right 1.407779e-01	k: 2719	n:20000
Cons ci ratio: 2.199504e-02	ci left: 6.068106e-01	ci right 6.203564e-01	k: 12272	n:20000
KS ci ratio: 1.026971e-01	ci left: 6.440262e-02	ci right 7.142363e-02	k: 1357	n:20000
CNDP2   20000 perm   4 sec   (5065 perm/sec)   p_kst 6.785000e-02   p_cons 6.136000e-01   p_joint 1.359500e-01

Joint ci ratio: 6.942271e-02	ci left: 9.272183e-02	ci right 9.942330e-02	k: 2881	n:30000
Cons ci ratio: 1.830565e-02	ci left: 5.989405e-01	ci right 6.100393e-01	k: 18135	n:30000
KS ci ratio: 8.337044e-02	ci left: 6.576487e-02	ci right 7.151901e-02	k: 2058	n:30000
CNDP2   30000 perm   6 sec   (4833 perm/sec)   p_kst 6.860000e-02   p_cons 6.045000e-01   p_joint 9.603333e-02

Outputting figure to mutsig2_images.part000000000040/CNDP2.5_1472_30000_0.0686_0.6045_0.096033.png
                gene_name: CNDP2
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.099 

Current progress: 47 percent done.
CNIH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.186533e-02	ci left: 7.542360e-01	ci right 7.710108e-01	k: 7627	n:10000
Cons ci ratio: 7.518634e-03	ci left: 9.607903e-01	ci right 9.681359e-01	k: 9646	n:10000
KS ci ratio: 3.446164e-02	ci left: 5.542133e-01	ci right 5.737494e-01	k: 5640	n:10000
CNIH3   10000 perm   2 sec   (5801 perm/sec)   p_kst 5.640000e-01   p_cons 9.646000e-01   p_joint 7.627000e-01

Outputting figure to mutsig2_images.part000000000040/CNIH3.5_507_10000_0.564_0.9646_0.7627.png
                gene_name: CNIH3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 48 percent done.
CNKSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.999969e-02	ci left: 6.210534e-01	ci right 6.400704e-01	k: 6306	n:10000
Cons ci ratio: 1.181361e-02	ci left: 9.112147e-01	ci right 9.221412e-01	k: 9168	n:10000
KS ci ratio: 4.533675e-02	ci left: 4.179754e-01	ci right 4.374667e-01	k: 4277	n:10000
CNKSR1   10000 perm   2 sec   (5273 perm/sec)   p_kst 4.277000e-01   p_cons 9.168000e-01   p_joint 6.306000e-01

Outputting figure to mutsig2_images.part000000000040/CNKSR1.5_2226_10000_0.4277_0.9168_0.6306.png
                gene_name: CNKSR1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 50 percent done.
CNR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.666854e-02	ci left: 2.482593e-01	ci right 2.654825e-01	k: 2568	n:10000
Cons ci ratio: 9.446282e-02	ci left: 1.399172e-01	ci right 1.538892e-01	k: 1468	n:10000
KS ci ratio: 3.926472e-02	ci left: 4.892517e-01	ci right 5.089489e-01	k: 4991	n:10000
CNR1   10000 perm   2 sec   (5955 perm/sec)   p_kst 4.991000e-01   p_cons 1.468000e-01   p_joint 2.568000e-01

Outputting figure to mutsig2_images.part000000000040/CNR1.5_1423_10000_0.4991_0.1468_0.2568.png
                gene_name: CNR1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 52 percent done.
CLU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.278862e-02	ci left: 7.387626e-01	ci right 7.558931e-01	k: 7474	n:10000
Cons ci ratio: 2.600354e-02	ci left: 6.852655e-01	ci right 7.034211e-01	k: 6944	n:10000
KS ci ratio: 3.317620e-02	ci left: 5.728619e-01	ci right 5.922899e-01	k: 5826	n:10000
CLU   10000 perm   2 sec   (5803 perm/sec)   p_kst 5.826000e-01   p_cons 6.944000e-01   p_joint 7.474000e-01

Outputting figure to mutsig2_images.part000000000040/CLU.4_1550_10000_0.5826_0.6944_0.7474.png
                gene_name: CLU
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 53 percent done.
CLUAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.292156e-02	ci left: 2.707198e-01	ci right 2.884088e-01	k: 2795	n:10000
Cons ci ratio: 4.407262e-02	ci left: 4.318355e-01	ci right 4.513986e-01	k: 4416	n:10000
KS ci ratio: 8.178706e-02	ci left: 1.791047e-01	ci right 1.944782e-01	k: 1867	n:10000
CLUAP1   10000 perm   2 sec   (5484 perm/sec)   p_kst 1.867000e-01   p_cons 4.416000e-01   p_joint 2.795000e-01

Outputting figure to mutsig2_images.part000000000040/CLUAP1.4_1290_10000_0.1867_0.4416_0.2795.png
                gene_name: CLUAP1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 55 percent done.
CMTM1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.116412e-02	ci left: 7.659773e-01	ci right 7.824627e-01	k: 7743	n:10000
KS ci ratio: 7.397016e-03	ci left: 9.619446e-01	ci right 9.691809e-01	k: 9657	n:10000
CMTM1   10000 perm   2 sec   (5928 perm/sec)   p_kst 9.657000e-01   p_cons 7.743000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CMTM1.3_877_10000_0.9657_0.7743_1.png
                gene_name: CMTM1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
CMTM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.355343e-03	ci left: 9.855591e-01	ci right 9.899499e-01	k: 9879	n:10000
KS ci ratio: 2.589946e-02	ci left: 6.869792e-01	ci right 7.051065e-01	k: 6961	n:10000
CMTM2   10000 perm   2 sec   (5964 perm/sec)   p_kst 6.961000e-01   p_cons 9.879000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CMTM2.4_763_10000_0.6961_0.9879_1.png
                gene_name: CMTM2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
CNGA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.324725e-02	ci left: 7.310817e-01	ci right 7.483784e-01	k: 7398	n:10000
KS ci ratio: 1.967418e-02	ci left: 7.908060e-01	ci right 8.066196e-01	k: 7988	n:10000
CNGA2   10000 perm   2 sec   (4992 perm/sec)   p_kst 7.988000e-01   p_cons 7.398000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNGA2.4_2019_10000_0.7988_0.7398_1.png
                gene_name: CNGA2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
CNOT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.359337e-02	ci left: 4.372220e-01	ci right 4.568089e-01	k: 4470	n:10000
Cons ci ratio: 7.512432e-02	ci left: 2.058972e-01	ci right 2.220697e-01	k: 2139	n:10000
KS ci ratio: 3.224372e-02	ci left: 5.867071e-01	ci right 6.060367e-01	k: 5964	n:10000
CNOT10   10000 perm   2 sec   (4796 perm/sec)   p_kst 5.964000e-01   p_cons 2.139000e-01   p_joint 4.470000e-01

Outputting figure to mutsig2_images.part000000000040/CNOT10.4_2311_10000_0.5964_0.2139_0.447.png
                gene_name: CNOT10
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 61 percent done.
CNOT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
Cons ci ratio: 7.728861e-02	ci left: 1.966317e-01	ci right 2.125408e-01	k: 2045	n:10000
KS ci ratio: 6.578961e-02	ci left: 2.533030e-01	ci right 2.706359e-01	k: 2619	n:10000
CNOT6   10000 perm   2 sec   (5193 perm/sec)   p_kst 2.619000e-01   p_cons 2.045000e-01   p_joint 2.266000e-01

Outputting figure to mutsig2_images.part000000000040/CNOT6.4_1718_10000_0.2619_0.2045_0.2266.png
                gene_name: CNOT6
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 63 percent done.
CNRIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.656849e-02	ci left: 6.759943e-01	ci right 6.942978e-01	k: 6852	n:10000
Cons ci ratio: 2.016252e-02	ci left: 7.826940e-01	ci right 7.987363e-01	k: 7908	n:10000
KS ci ratio: 4.615168e-02	ci left: 4.093044e-01	ci right 4.287428e-01	k: 4190	n:10000
CNRIP1   10000 perm   1 sec   (6782 perm/sec)   p_kst 4.190000e-01   p_cons 7.908000e-01   p_joint 6.852000e-01

Outputting figure to mutsig2_images.part000000000040/CNRIP1.4_568_10000_0.419_0.7908_0.6852.png
                gene_name: CNRIP1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 65 percent done.
CNTNAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.350978e-02	ci left: 2.131958e-01	ci right 2.295668e-01	k: 2213	n:10000
Cons ci ratio: 6.728524e-02	ci left: 2.447989e-01	ci right 2.619450e-01	k: 2533	n:10000
KS ci ratio: 4.068000e-02	ci left: 4.715636e-01	ci right 4.912473e-01	k: 4814	n:10000
CNTNAP3   10000 perm   2 sec   (4665 perm/sec)   p_kst 4.814000e-01   p_cons 2.533000e-01   p_joint 2.213000e-01

Outputting figure to mutsig2_images.part000000000040/CNTNAP3.4_3963_10000_0.4814_0.2533_0.2213.png
                gene_name: CNTNAP3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 66 percent done.
CNDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.905673e-02	ci left: 3.800254e-01	ci right 3.992390e-01	k: 3896	n:10000
Cons ci ratio: 7.726487e-02	ci left: 1.967302e-01	ci right 2.126422e-01	k: 2046	n:10000
KS ci ratio: 3.096001e-02	ci left: 6.061840e-01	ci right 6.253485e-01	k: 6158	n:10000
CNDP1   10000 perm   2 sec   (5487 perm/sec)   p_kst 6.158000e-01   p_cons 2.046000e-01   p_joint 3.896000e-01

Outputting figure to mutsig2_images.part000000000040/CNDP1.3_1572_10000_0.6158_0.2046_0.3896.png
                gene_name: CNDP1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 68 percent done.
CNKSR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.703343e-03	ci left: 9.590082e-01	ci right 9.665191e-01	k: 9629	n:10000
KS ci ratio: 2.920630e-02	ci left: 6.335189e-01	ci right 6.523977e-01	k: 6430	n:10000
CNKSR3   10000 perm   2 sec   (5475 perm/sec)   p_kst 6.430000e-01   p_cons 9.629000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNKSR3.3_1720_10000_0.643_0.9629_1.png
                gene_name: CNKSR3
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
CNOT6L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.415757e-01	ci left: 6.613851e-02	ci right 7.631298e-02	k: 711	n:10000
Cons ci ratio: 9.008395e-02	ci left: 1.519811e-01	ci right 1.664180e-01	k: 1591	n:10000
KS ci ratio: 1.827128e-01	ci left: 3.996794e-02	ci right 4.810038e-02	k: 439	n:10000
CNOT6L   10000 perm   2 sec   (5579 perm/sec)   p_kst 4.390000e-02   p_cons 1.591000e-01   p_joint 7.110000e-02

Joint ci ratio: 1.349137e-01	ci left: 3.776159e-02	ci right 4.327302e-02	k: 809	n:20000
Cons ci ratio: 6.405925e-02	ci left: 1.526246e-01	ci right 1.627751e-01	k: 3153	n:20000
KS ci ratio: 1.271729e-01	ci left: 4.245914e-02	ci right 4.827396e-02	k: 906	n:20000
CNOT6L   20000 perm   4 sec   (4973 perm/sec)   p_kst 4.530000e-02   p_cons 1.576500e-01   p_joint 4.045000e-02

Joint ci ratio: 1.155139e-01	ci left: 3.482746e-02	ci right 3.912947e-02	k: 1108	n:30000
Cons ci ratio: 5.252207e-02	ci left: 1.524713e-01	ci right 1.607286e-01	k: 4697	n:30000
KS ci ratio: 1.016831e-01	ci left: 4.479504e-02	ci right 4.962647e-02	k: 1415	n:30000
CNOT6L   30000 perm   6 sec   (4777 perm/sec)   p_kst 4.716667e-02   p_cons 1.565667e-01   p_joint 3.693333e-02

Joint ci ratio: 9.389929e-02	ci left: 3.978626e-02	ci right 4.373062e-02	k: 1669	n:40000
Cons ci ratio: 4.568461e-02	ci left: 1.518870e-01	ci right 1.590131e-01	k: 6217	n:40000
KS ci ratio: 8.857874e-02	ci left: 4.460381e-02	ci right 4.876232e-02	k: 1866	n:40000
CNOT6L   40000 perm   9 sec   (4677 perm/sec)   p_kst 4.665000e-02   p_cons 1.554250e-01   p_joint 4.172500e-02

Outputting figure to mutsig2_images.part000000000040/CNOT6L.3_1716_40000_0.04665_0.15543_0.041725.png
                gene_name: CNOT6L
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.044 

Current progress: 71 percent done.
CNOT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.220959e-02	ci left: 4.531890e-01	ci right 4.728325e-01	k: 4630	n:10000
Cons ci ratio: 2.583216e-02	ci left: 6.880881e-01	ci right 7.061970e-01	k: 6972	n:10000
KS ci ratio: 4.822146e-02	ci left: 3.881880e-01	ci right 4.074716e-01	k: 3978	n:10000
CNOT7   10000 perm   2 sec   (6283 perm/sec)   p_kst 3.978000e-01   p_cons 6.972000e-01   p_joint 4.630000e-01

Outputting figure to mutsig2_images.part000000000040/CNOT7.3_888_10000_0.3978_0.6972_0.463.png
                gene_name: CNOT7
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 73 percent done.
CLTA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.317239e-02	ci left: 2.691358e-01	ci right 2.867938e-01	k: 2779	n:10000
Cons ci ratio: 3.484857e-02	ci left: 5.487016e-01	ci right 5.682643e-01	k: 5585	n:10000
KS ci ratio: 8.372187e-02	ci left: 1.722191e-01	ci right 1.873680e-01	k: 1797	n:10000
CLTA   10000 perm   2 sec   (6593 perm/sec)   p_kst 1.797000e-01   p_cons 5.585000e-01   p_joint 2.779000e-01

Outputting figure to mutsig2_images.part000000000040/CLTA.2_775_10000_0.1797_0.5585_0.2779.png
                gene_name: CLTA
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 74 percent done.
CLUL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.070229e-03	ci left: 9.922835e-01	ci right 9.954183e-01	k: 9940	n:10000
KS ci ratio: 3.892077e-02	ci left: 4.936506e-01	ci right 5.133474e-01	k: 5035	n:10000
CLUL1   10000 perm   2 sec   (6357 perm/sec)   p_kst 5.035000e-01   p_cons 9.940000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CLUL1.2_1433_10000_0.5035_0.994_1.png
                gene_name: CLUL1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
CLVS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.638534e-02	ci left: 8.441744e-01	ci right 8.582204e-01	k: 8513	n:10000
KS ci ratio: 2.547790e-02	ci left: 6.939360e-01	ci right 7.119456e-01	k: 7030	n:10000
CLVS1   10000 perm   2 sec   (6472 perm/sec)   p_kst 7.030000e-01   p_cons 8.513000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CLVS1.2_1085_10000_0.703_0.8513_1.png
                gene_name: CLVS1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
CLVS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.549010e-02	ci left: 6.937343e-01	ci right 7.117474e-01	k: 7028	n:10000
Cons ci ratio: 2.788293e-02	ci left: 6.546456e-01	ci right 6.732588e-01	k: 6640	n:10000
KS ci ratio: 3.042605e-02	ci left: 6.144213e-01	ci right 6.335064e-01	k: 6240	n:10000
CLVS2   10000 perm   2 sec   (6317 perm/sec)   p_kst 6.240000e-01   p_cons 6.640000e-01   p_joint 7.028000e-01

Outputting figure to mutsig2_images.part000000000040/CLVS2.2_1004_10000_0.624_0.664_0.7028.png
                gene_name: CLVS2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 79 percent done.
CMIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.774183e-02	ci left: 3.929674e-01	ci right 4.122893e-01	k: 4026	n:10000
Cons ci ratio: 1.927855e-01	ci left: 3.586235e-02	ci right 4.360871e-02	k: 396	n:10000
KS ci ratio: 3.067289e-02	ci left: 6.106037e-01	ci right 6.297263e-01	k: 6202	n:10000
CMIP   10000 perm   2 sec   (6159 perm/sec)   p_kst 6.202000e-01   p_cons 3.960000e-02   p_joint 4.026000e-01

Joint ci ratio: 3.372672e-02	ci left: 3.962914e-01	ci right 4.099368e-01	k: 8062	n:20000
Cons ci ratio: 1.368624e-01	ci left: 3.669759e-02	ci right 4.213736e-02	k: 787	n:20000
KS ci ratio: 2.177303e-02	ci left: 6.116257e-01	ci right 6.251398e-01	k: 12368	n:20000
CMIP   20000 perm   4 sec   (5340 perm/sec)   p_kst 6.184000e-01   p_cons 3.935000e-02   p_joint 4.031000e-01

Joint ci ratio: 2.757490e-02	ci left: 3.969104e-01	ci right 4.080418e-01	k: 12074	n:30000
Cons ci ratio: 1.114056e-01	ci left: 3.742123e-02	ci right 4.186849e-02	k: 1188	n:30000
KS ci ratio: 1.768887e-02	ci left: 6.152481e-01	ci right 6.262618e-01	k: 18623	n:30000
CMIP   30000 perm   6 sec   (5093 perm/sec)   p_kst 6.207667e-01   p_cons 3.960000e-02   p_joint 4.024667e-01

Joint ci ratio: 2.390164e-02	ci left: 3.972398e-01	ci right 4.068744e-01	k: 16082	n:40000
Cons ci ratio: 9.680945e-02	ci left: 3.746566e-02	ci right 4.130158e-02	k: 1574	n:40000
KS ci ratio: 1.532538e-02	ci left: 6.157986e-01	ci right 6.253339e-01	k: 24823	n:40000
CMIP   40000 perm   8 sec   (4938 perm/sec)   p_kst 6.205750e-01   p_cons 3.935000e-02   p_joint 4.020500e-01

Outputting figure to mutsig2_images.part000000000040/CMIP.2_2428_40000_0.62057_0.03935_0.40205.png
                gene_name: CMIP
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 81 percent done.
CMKLR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.104208e-02	ci left: 3.614212e-01	ci right 3.804540e-01	k: 3709	n:10000
KS ci ratio: 2.070356e-02	ci left: 7.736747e-01	ci right 7.899608e-01	k: 7819	n:10000
CMKLR1   10000 perm   2 sec   (6447 perm/sec)   p_kst 7.819000e-01   p_cons 3.709000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CMKLR1.2_1130_10000_0.7819_0.3709_1.png
                gene_name: CMKLR1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
CMPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.164216e-02	ci left: 2.220775e-01	ci right 2.386798e-01	k: 2303	n:10000
Cons ci ratio: 1.471006e-01	ci left: 6.140379e-02	ci right 7.125068e-02	k: 662	n:10000
KS ci ratio: 5.645451e-02	ci left: 3.160206e-01	ci right 3.344813e-01	k: 3252	n:10000
CMPK1   10000 perm   1 sec   (6955 perm/sec)   p_kst 3.252000e-01   p_cons 6.620000e-02   p_joint 2.303000e-01

Joint ci ratio: 4.942675e-02	ci left: 2.333010e-01	ci right 2.451749e-01	k: 4784	n:20000
Cons ci ratio: 1.060009e-01	ci left: 6.059777e-02	ci right 6.742966e-02	k: 1279	n:20000
KS ci ratio: 4.054605e-02	ci left: 3.119952e-01	ci right 3.249576e-01	k: 6369	n:20000
CMPK1   20000 perm   3 sec   (6092 perm/sec)   p_kst 3.184500e-01   p_cons 6.395000e-02   p_joint 2.392000e-01

Joint ci ratio: 3.883046e-02	ci left: 2.486179e-01	ci right 2.584965e-01	k: 7606	n:30000
Cons ci ratio: 8.529901e-02	ci left: 6.295458e-02	ci right 6.859654e-02	k: 1972	n:30000
KS ci ratio: 3.321790e-02	ci left: 3.117359e-01	ci right 3.222996e-01	k: 9510	n:30000
CMPK1   30000 perm   5 sec   (5766 perm/sec)   p_kst 3.170000e-01   p_cons 6.573333e-02   p_joint 2.535333e-01

Outputting figure to mutsig2_images.part000000000040/CMPK1.2_711_30000_0.317_0.065733_0.25353.png
                gene_name: CMPK1
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 84 percent done.
CNIH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.823983e-02	ci left: 6.489092e-01	ci right 6.675985e-01	k: 6583	n:10000
KS ci ratio: 2.677805e-02	ci left: 6.725690e-01	ci right 6.909251e-01	k: 6818	n:10000
CNIH   10000 perm   1 sec   (6981 perm/sec)   p_kst 6.818000e-01   p_cons 6.583000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNIH.2_455_10000_0.6818_0.6583_1.png
                gene_name: CNIH
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
CNNM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.412556e-01	ci left: 6.642862e-02	ci right 7.662268e-02	k: 714	n:10000
Cons ci ratio: 1.411493e-01	ci left: 6.652534e-02	ci right 7.672591e-02	k: 715	n:10000
KS ci ratio: 8.135889e-02	ci left: 1.806791e-01	ci right 1.961029e-01	k: 1883	n:10000
CNNM3   10000 perm   2 sec   (6171 perm/sec)   p_kst 1.883000e-01   p_cons 7.150000e-02   p_joint 7.140000e-02

Joint ci ratio: 9.556323e-02	ci left: 7.387984e-02	ci right 8.134352e-02	k: 1551	n:20000
Cons ci ratio: 9.610131e-02	ci left: 7.309752e-02	ci right 8.052607e-02	k: 1535	n:20000
KS ci ratio: 5.761499e-02	ci left: 1.825069e-01	ci right 1.933840e-01	k: 3758	n:20000
CNNM3   20000 perm   4 sec   (5380 perm/sec)   p_kst 1.879000e-01   p_cons 7.675000e-02   p_joint 7.755000e-02

Outputting figure to mutsig2_images.part000000000040/CNNM3.2_2156_20000_0.1879_0.07675_0.07755.png
                gene_name: CNNM3
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.081 

Current progress: 87 percent done.
CNOT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.163479e-02	ci left: 9.135826e-01	ci right 9.243718e-01	k: 9191	n:10000
KS ci ratio: 4.122148e-02	ci left: 4.649712e-01	ci right 4.846435e-01	k: 4748	n:10000
CNOT3   10000 perm   2 sec   (5837 perm/sec)   p_kst 4.748000e-01   p_cons 9.191000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNOT3.2_2330_10000_0.4748_0.9191_1.png
                gene_name: CNOT3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
CNOT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.040185e-01	ci left: 3.195912e-02	ci right 3.931460e-02	k: 355	n:10000
Cons ci ratio: 1.953620e-01	ci left: 3.490925e-02	ci right 4.256245e-02	k: 386	n:10000
KS ci ratio: 8.567447e-02	ci left: 1.656325e-01	ci right 1.805584e-01	k: 1730	n:10000
CNOT4   10000 perm   2 sec   (5856 perm/sec)   p_kst 1.730000e-01   p_cons 3.860000e-02   p_joint 3.550000e-02

Joint ci ratio: 1.221762e-01	ci left: 4.595193e-02	ci right 5.198006e-02	k: 978	n:20000
Cons ci ratio: 1.364125e-01	ci left: 3.693936e-02	ci right 4.239551e-02	k: 792	n:20000
KS ci ratio: 6.104084e-02	ci left: 1.657063e-01	ci right 1.761896e-01	k: 3418	n:20000
CNOT4   20000 perm   4 sec   (5037 perm/sec)   p_kst 1.709000e-01   p_cons 3.960000e-02   p_joint 4.890000e-02

Joint ci ratio: 1.199052e-01	ci left: 3.233379e-02	ci right 3.649034e-02	k: 1031	n:30000
Cons ci ratio: 1.121442e-01	ci left: 3.693468e-02	ci right 4.135514e-02	k: 1173	n:30000
KS ci ratio: 5.013791e-02	ci left: 1.650059e-01	ci right 1.735249e-01	k: 5077	n:30000
CNOT4   30000 perm   6 sec   (4726 perm/sec)   p_kst 1.692333e-01   p_cons 3.910000e-02   p_joint 3.436667e-02

Joint ci ratio: 1.114969e-01	ci left: 2.830132e-02	ci right 3.166737e-02	k: 1198	n:40000
Cons ci ratio: 9.732521e-02	ci left: 3.707501e-02	ci right 4.089229e-02	k: 1558	n:40000
KS ci ratio: 4.340024e-02	ci left: 1.657109e-01	ci right 1.730872e-01	k: 6775	n:40000
CNOT4   40000 perm   9 sec   (4676 perm/sec)   p_kst 1.693750e-01   p_cons 3.895000e-02   p_joint 2.995000e-02

Joint ci ratio: 7.296135e-02	ci left: 5.258515e-02	ci right 5.658676e-02	k: 2728	n:50000
Cons ci ratio: 8.741876e-02	ci left: 3.696746e-02	ci right 4.036637e-02	k: 1932	n:50000
KS ci ratio: 3.887368e-02	ci left: 1.657047e-01	ci right 1.722938e-01	k: 8449	n:50000
CNOT4   50000 perm   11 sec   (4615 perm/sec)   p_kst 1.689800e-01   p_cons 3.864000e-02   p_joint 5.456000e-02

Outputting figure to mutsig2_images.part000000000040/CNOT4.2_2065_50000_0.16898_0.03864_0.05456.png
                gene_name: CNOT4
               theta_stop: 0.087 
                    nperm: 50000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 90 percent done.
CNOT8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.839688e-02	ci left: 6.463937e-01	ci right 6.651154e-01	k: 6558	n:10000
Cons ci ratio: 1.573306e-02	ci left: 8.543705e-01	ci right 8.680184e-01	k: 8613	n:10000
KS ci ratio: 4.751436e-02	ci left: 3.952579e-01	ci right 4.145975e-01	k: 4049	n:10000
CNOT8   10000 perm   2 sec   (5491 perm/sec)   p_kst 4.049000e-01   p_cons 8.613000e-01   p_joint 6.558000e-01

Outputting figure to mutsig2_images.part000000000040/CNOT8.2_903_10000_0.4049_0.8613_0.6558.png
                gene_name: CNOT8
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 92 percent done.
CNPY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.039378e-02	ci left: 7.788424e-01	ci right 7.949902e-01	k: 7870	n:10000
KS ci ratio: 1.010478e-01	ci left: 1.241518e-01	ci right 1.374641e-01	k: 1307	n:10000
CNPY1   10000 perm   2 sec   (6631 perm/sec)   p_kst 1.307000e-01   p_cons 7.870000e-01   p_joint 1

Joint ci ratio: 2.000045e-02	ci left: 6.509762e-01	ci right 6.641780e-01	k: 13152	n:20000
Cons ci ratio: 1.438172e-02	ci left: 7.821678e-01	ci right 7.935484e-01	k: 15758	n:20000
KS ci ratio: 7.184833e-02	ci left: 1.248759e-01	ci right 1.342321e-01	k: 2590	n:20000
CNPY1   20000 perm   4 sec   (5695 perm/sec)   p_kst 1.295000e-01   p_cons 7.879000e-01   p_joint 6.576000e-01

Outputting figure to mutsig2_images.part000000000040/CNPY1.2_291_20000_0.1295_0.7879_0.6576.png
                gene_name: CNPY1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 94 percent done.
CNPY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.975368e-02	ci left: 7.894875e-01	ci right 8.053389e-01	k: 7975	n:10000
Cons ci ratio: 6.827759e-02	ci left: 2.393626e-01	ci right 2.563846e-01	k: 2478	n:10000
KS ci ratio: 1.693796e-02	ci left: 8.354145e-01	ci right 8.497853e-01	k: 8427	n:10000
CNPY2   10000 perm   2 sec   (5862 perm/sec)   p_kst 8.427000e-01   p_cons 2.478000e-01   p_joint 7.975000e-01

Outputting figure to mutsig2_images.part000000000040/CNPY2.2_569_10000_0.8427_0.2478_0.7975.png
                gene_name: CNPY2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 95 percent done.
CNTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.063518e-01	ci left: 1.132038e-01	ci right 1.260187e-01	k: 1195	n:10000
Cons ci ratio: 1.198041e-01	ci left: 9.087811e-02	ci right 1.025580e-01	k: 966	n:10000
KS ci ratio: 4.627510e-02	ci left: 4.080090e-01	ci right 4.274390e-01	k: 4177	n:10000
CNTD1   10000 perm   2 sec   (6001 perm/sec)   p_kst 4.177000e-01   p_cons 9.660000e-02   p_joint 1.195000e-01

Joint ci ratio: 5.750199e-02	ci left: 1.831001e-01	ci right 1.939906e-01	k: 3770	n:20000
Cons ci ratio: 8.800347e-02	ci left: 8.626460e-02	ci right 9.425499e-02	k: 1804	n:20000
KS ci ratio: 3.280867e-02	ci left: 4.096055e-01	ci right 4.233188e-01	k: 8329	n:20000
CNTD1   20000 perm   4 sec   (4885 perm/sec)   p_kst 4.164500e-01   p_cons 9.020000e-02   p_joint 1.885000e-01

Outputting figure to mutsig2_images.part000000000040/CNTD1.2_1021_20000_0.41645_0.0902_0.1885.png
                gene_name: CNTD1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 97 percent done.
CNTF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.739775e-03	ci left: 9.761027e-01	ci right 9.818135e-01	k: 9791	n:10000
Cons ci ratio: 3.186340e-02	ci left: 5.924281e-01	ci right 6.117124e-01	k: 6021	n:10000
KS ci ratio: 1.251928e-02	ci left: 9.016521e-01	ci right 9.131093e-01	k: 9075	n:10000
CNTF   10000 perm   1 sec   (6755 perm/sec)   p_kst 9.075000e-01   p_cons 6.021000e-01   p_joint 9.791000e-01

Outputting figure to mutsig2_images.part000000000040/CNTF.2_611_10000_0.9075_0.6021_0.9791.png
                gene_name: CNTF
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 98 percent done.
CNTFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.338240e-02	ci left: 4.396164e-01	ci right 4.592131e-01	k: 4494	n:10000
KS ci ratio: 2.552061e-02	ci left: 6.932301e-01	ci right 7.112519e-01	k: 7023	n:10000
CNTFR   10000 perm   2 sec   (6623 perm/sec)   p_kst 7.023000e-01   p_cons 4.494000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000040/CNTFR.2_1151_10000_0.7023_0.4494_1.png
                gene_name: CNTFR
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000040
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 40 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1729>
Subject: Job 9893892: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1729>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000041> was used as the working directory.
Started at Sat Oct  6 00:03:46 2012
Results reported at Sat Oct  6 03:14:00 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000041.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000041.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 41  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000041.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11298.42 sec.
    Max Memory :      6455 MB
    Max Swap   :      8831 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
41
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 41
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 41: processing genes 3607 - 3696
Calculating significance of each gene.
Using projection method.
3607	COBLL1	5.394168e-02
3608	COBRA1	3.168768e-01
3609	COCH	4.445008e-01
3610	COG1	7.420591e-01
3611	COG2	4.718268e-01
3612	COG3	6.167694e-01
3613	COG4	6.066223e-01
3614	COG5	7.330045e-01
3615	COG6	4.271422e-01
3616	COG7	3.635493e-01
3617	COG8	9.497793e-01
3618	COIL	1
3619	COL10A1	1
3620	COL11A1	1.076226e-03
In gene COL11A2 the following bins exceed PROBCAP:
    COAD-AA-A00K	categ 6	N = 2250    n = 1	mu =   5.86e-07
3621	COL11A2	4.374598e-01
3622	COL12A1	8.953043e-04
3623	COL13A1	7.093512e-01
3624	COL14A1	4.893997e-03
3625	COL15A1	4.328271e-01
3626	COL16A1	8.856105e-01
3627	COL17A1	6.668822e-01
3628	COL18A1	8.637553e-01
3629	COL19A1	7.739178e-01
3630	COL1A1	4.561663e-01
3631	COL1A2	3.641548e-03
3632	COL20A1	9.912735e-01
3633	COL21A1	4.484243e-01
3634	COL22A1	1.269917e-03
3635	COL23A1	4.060934e-01
3636	COL24A1	1.758233e-01
3637	COL25A1	3.487155e-01
3638	COL27A1	6.499403e-01
3639	COL28A1	5.484552e-01
3640	COL2A1	3.326831e-01
3641	COL3A1	2.966479e-02
3642	COL4A1	1.285378e-01
3643	COL4A2	9.374512e-01
3644	COL4A3	9.668996e-01
3645	COL4A3BP	6.318841e-01
3646	COL4A4	3.885331e-01
3647	COL4A5	3.547528e-03
3648	COL4A6	6.671477e-02
3649	COL5A1	1.423606e-01
3650	COL5A2	5.602775e-02
3651	COL5A3	6.606195e-01
3652	COL6A1	1
3653	COL6A2	9.930049e-01
3654	COL6A3	2.034842e-03
3655	COL6A6	1.293099e-02
3656	COL7A1	8.864193e-01
3657	COL8A1	9.509606e-01
In gene COL8A2 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 1688    n = 1	mu =   8.55e-07
3658	COL8A2	7.653945e-01
In gene COL9A1 the following bins exceed PROBCAP:
    COAD-AA-A004	categ 6	N = 2991    n = 1	mu =   1.64e-07
3659	COL9A1	1.070717e-01
3660	COL9A2	6.026816e-01
3661	COL9A3	1
3662	COLEC10	1.454546e-01
3663	COLEC11	9.108048e-02
3664	COLEC12	9.927540e-03
3665	COLQ	1
3666	COMMD1	3.860452e-01
3667	COMMD10	2.714794e-01
3668	COMMD2	1.623190e-01
3669	COMMD3	1
3670	COMMD4	3.367498e-01
3671	COMMD5	8.139423e-03
3672	COMMD6	1
3673	COMMD7	1
3674	COMMD8	1.864956e-01
3675	COMMD9	4.451626e-01
3676	COMP	8.429666e-01
3677	COMT	1
3678	COMTD1	1
3679	COPA	9.806888e-01
3680	COPB1	2.315743e-02
3681	COPB2	5.405351e-01
3682	COPE	3.914249e-01
3683	COPG	9.564289e-01
3684	COPG2	1
3685	COPS2	6.971949e-01
3686	COPS3	8.648823e-01
In gene COPS4 the following bins exceed PROBCAP:
    COAD-AA-3529	categ 6	N = 1261    n = 1	mu =   2.41e-07
3687	COPS4	1.973902e-01
3688	COPS5	5.105079e-01
3689	COPS6	5.727593e-01
3690	COPS7A	7.560985e-01
3691	COPS7B	6.243713e-01
3692	COPS8	5.046426e-01
3693	COPZ1	1
3694	COPZ2	1
3695	COQ10A	7.109491e-01
3696	COQ10B	4.686220e-01
Done

Running MutSig 2:
Scatter job 41: processing genes 3607 - 3696
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
COL6A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.071161e-01	ci left: 1.117389e-01	ci right 1.244845e-01	k: 1180	n:10000
Cons ci ratio: 2.344190e-01	ci left: 2.400584e-02	ci right 3.047352e-02	k: 271	n:10000
KS ci ratio: 1.700177e-02	ci left: 8.343964e-01	ci right 8.488040e-01	k: 8417	n:10000
COL6A3   10000 perm   3 sec   (3283 perm/sec)   p_kst 8.417000e-01   p_cons 2.710000e-02   p_joint 1.180000e-01

Joint ci ratio: 7.858209e-02	ci left: 1.062851e-01	ci right 1.150284e-01	k: 2212	n:20000
Cons ci ratio: 1.676740e-01	ci left: 2.436600e-02	ci right 2.887305e-02	k: 531	n:20000
KS ci ratio: 1.196726e-02	ci left: 8.377820e-01	ci right 8.479181e-01	k: 16858	n:20000
COL6A3   20000 perm   9 sec   (2289 perm/sec)   p_kst 8.429000e-01   p_cons 2.655000e-02   p_joint 1.106000e-01

Joint ci ratio: 7.091607e-02	ci left: 8.914596e-02	ci right 9.573322e-02	k: 2772	n:30000
Cons ci ratio: 1.390698e-01	ci left: 2.400317e-02	ci right 2.762279e-02	k: 773	n:30000
KS ci ratio: 9.561164e-03	ci left: 8.444599e-01	ci right 8.526058e-01	k: 25457	n:30000
COL6A3   30000 perm   12 sec   (2479 perm/sec)   p_kst 8.485667e-01   p_cons 2.576667e-02   p_joint 9.240000e-02

Joint ci ratio: 6.800256e-02	ci left: 7.408581e-02	ci right 7.932584e-02	k: 3067	n:40000
Cons ci ratio: 1.361600e-01	ci left: 1.891623e-02	ci right 2.170402e-02	k: 811	n:40000
KS ci ratio: 8.287910e-03	ci left: 8.447720e-01	ci right 8.518274e-01	k: 33933	n:40000
COL6A3   40000 perm   16 sec   (2534 perm/sec)   p_kst 8.483250e-01   p_cons 2.027500e-02   p_joint 7.667500e-02

Joint ci ratio: 7.058487e-02	ci left: 5.604556e-02	ci right 6.016593e-02	k: 2904	n:50000
Cons ci ratio: 1.221545e-01	ci left: 1.894599e-02	ci right 2.143016e-02	k: 1008	n:50000
KS ci ratio: 7.396895e-03	ci left: 8.457104e-01	ci right 8.520091e-01	k: 42444	n:50000
COL6A3   50000 perm   19 sec   (2591 perm/sec)   p_kst 8.488800e-01   p_cons 2.016000e-02   p_joint 5.808000e-02

Joint ci ratio: 6.334256e-02	ci left: 5.809631e-02	ci right 6.191306e-02	k: 3599	n:60000
Cons ci ratio: 1.120701e-01	ci left: 1.886230e-02	ci right 2.111780e-02	k: 1198	n:60000
KS ci ratio: 6.748786e-03	ci left: 8.461267e-01	ci right 8.518729e-01	k: 50941	n:60000
COL6A3   60000 perm   23 sec   (2627 perm/sec)   p_kst 8.490167e-01   p_cons 1.996667e-02   p_joint 5.998333e-02

Joint ci ratio: 5.996108e-02	ci left: 5.581485e-02	ci right 5.927908e-02	k: 4027	n:70000
Cons ci ratio: 1.036372e-01	ci left: 1.898960e-02	ci right 2.107903e-02	k: 1401	n:70000
KS ci ratio: 6.251683e-03	ci left: 8.461965e-01	ci right 8.515174e-01	k: 59421	n:70000
COL6A3   70000 perm   26 sec   (2646 perm/sec)   p_kst 8.488714e-01   p_cons 2.001429e-02   p_joint 5.752857e-02

Joint ci ratio: 6.167091e-02	ci left: 4.659045e-02	ci right 4.956744e-02	k: 3845	n:80000
Cons ci ratio: 9.704542e-02	ci left: 1.901665e-02	ci right 2.096838e-02	k: 1598	n:80000
KS ci ratio: 5.854940e-03	ci left: 8.460596e-01	ci right 8.510401e-01	k: 67885	n:80000
COL6A3   80000 perm   31 sec   (2596 perm/sec)   p_kst 8.485625e-01   p_cons 1.997500e-02   p_joint 4.806250e-02

Outputting figure to mutsig2_images.part000000000041/COL6A3.43_9753_80000_0.84856_0.019975_0.048063.png
                gene_name: COL6A3
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 2 percent done.
COL12A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.969102e-02	ci left: 4.838540e-01	ci right 5.035497e-01	k: 4937	n:10000
Cons ci ratio: 1.847290e-02	ci left: 8.106001e-01	ci right 8.258141e-01	k: 8183	n:10000
KS ci ratio: 6.006440e-02	ci left: 2.896400e-01	ci right 3.076774e-01	k: 2986	n:10000
COL12A1   10000 perm   3 sec   (3306 perm/sec)   p_kst 2.986000e-01   p_cons 8.183000e-01   p_joint 4.937000e-01

Outputting figure to mutsig2_images.part000000000041/COL12A1.37_9452_10000_0.2986_0.8183_0.4937.png
                gene_name: COL12A1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 3 percent done.
COL11A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.947870e-02	ci left: 1.276742e-01	ci right 1.411395e-01	k: 1343	n:10000
Cons ci ratio: 9.733309e-03	ci left: 9.372385e-01	ci right 9.465020e-01	k: 9420	n:10000
KS ci ratio: 1.269826e-01	ci left: 8.144990e-02	ci right 9.259206e-02	k: 869	n:10000
COL11A1   10000 perm   2 sec   (4302 perm/sec)   p_kst 8.690000e-02   p_cons 9.420000e-01   p_joint 1.343000e-01

Joint ci ratio: 6.947976e-02	ci left: 1.325089e-01	ci right 1.420968e-01	k: 2745	n:20000
Cons ci ratio: 6.986549e-03	ci left: 9.369269e-01	ci right 9.435444e-01	k: 18806	n:20000
KS ci ratio: 9.007588e-02	ci left: 8.259055e-02	ci right 9.043015e-02	k: 1729	n:20000
COL11A1   20000 perm   5 sec   (3933 perm/sec)   p_kst 8.645000e-02   p_cons 9.403000e-01   p_joint 1.372500e-01

Outputting figure to mutsig2_images.part000000000041/COL11A1.24_5846_20000_0.08645_0.9403_0.13725.png
                gene_name: COL11A1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 5 percent done.
COL14A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.750272e-02	ci left: 6.607862e-01	ci right 6.793147e-01	k: 6701	n:10000
Cons ci ratio: 2.870566e-02	ci left: 6.414642e-01	ci right 6.602478e-01	k: 6509	n:10000
KS ci ratio: 4.373470e-02	ci left: 4.356259e-01	ci right 4.552059e-01	k: 4454	n:10000
COL14A1   10000 perm   2 sec   (4147 perm/sec)   p_kst 4.454000e-01   p_cons 6.509000e-01   p_joint 6.701000e-01

Outputting figure to mutsig2_images.part000000000041/COL14A1.23_5579_10000_0.4454_0.6509_0.6701.png
                gene_name: COL14A1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 6 percent done.
COL22A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.082595e-02	ci left: 9.239968e-01	ci right 9.341516e-01	k: 9292	n:10000
Cons ci ratio: 2.243266e-02	ci left: 7.447278e-01	ci right 7.617245e-01	k: 7533	n:10000
KS ci ratio: 1.772965e-02	ci left: 8.226953e-01	ci right 8.375119e-01	k: 8302	n:10000
COL22A1   10000 perm   2 sec   (4098 perm/sec)   p_kst 8.302000e-01   p_cons 7.533000e-01   p_joint 9.292000e-01

Outputting figure to mutsig2_images.part000000000041/COL22A1.22_5137_10000_0.8302_0.7533_0.9292.png
                gene_name: COL22A1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 8 percent done.
COL6A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.031728e-02	ci left: 3.680851e-01	ci right 3.871862e-01	k: 3776	n:10000
Cons ci ratio: 3.805849e-02	ci left: 5.048513e-01	ci right 5.245401e-01	k: 5147	n:10000
KS ci ratio: 7.921578e-02	ci left: 1.888498e-01	ci right 2.045273e-01	k: 1966	n:10000
COL6A6   10000 perm   2 sec   (4047 perm/sec)   p_kst 1.966000e-01   p_cons 5.147000e-01   p_joint 3.776000e-01

Outputting figure to mutsig2_images.part000000000041/COL6A6.20_6936_10000_0.1966_0.5147_0.3776.png
                gene_name: COL6A6
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 10 percent done.
COL4A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.326580e-01	ci left: 7.494951e-02	ci right 8.569647e-02	k: 802	n:10000
Cons ci ratio: 1.945788e-01	ci left: 3.519511e-02	ci right 4.287640e-02	k: 389	n:10000
KS ci ratio: 8.025848e-02	ci left: 1.848130e-01	ci right 2.003665e-01	k: 1925	n:10000
COL4A5   10000 perm   2 sec   (4551 perm/sec)   p_kst 1.925000e-01   p_cons 3.890000e-02   p_joint 8.020000e-02

Joint ci ratio: 1.377751e-01	ci left: 3.621414e-02	ci right 4.162097e-02	k: 777	n:20000
Cons ci ratio: 1.353497e-01	ci left: 3.751972e-02	ci right 4.301496e-02	k: 804	n:20000
KS ci ratio: 5.690763e-02	ci left: 1.862647e-01	ci right 1.972251e-01	k: 3834	n:20000
COL4A5   20000 perm   5 sec   (4201 perm/sec)   p_kst 1.917000e-01   p_cons 4.020000e-02   p_joint 3.885000e-02

Joint ci ratio: 1.087199e-01	ci left: 3.927096e-02	ci right 4.381837e-02	k: 1245	n:30000
Cons ci ratio: 1.106806e-01	ci left: 3.790787e-02	ci right 4.238175e-02	k: 1203	n:30000
KS ci ratio: 4.669875e-02	ci left: 1.857394e-01	ci right 1.946540e-01	k: 5705	n:30000
COL4A5   30000 perm   7 sec   (4062 perm/sec)   p_kst 1.901667e-01   p_cons 4.010000e-02   p_joint 4.150000e-02

Joint ci ratio: 7.486110e-02	ci left: 6.174349e-02	ci right 6.657002e-02	k: 2565	n:40000
Cons ci ratio: 9.828030e-02	ci left: 3.636708e-02	ci right 4.015033e-02	k: 1529	n:40000
KS ci ratio: 4.024978e-02	ci left: 1.878028e-01	ci right 1.955420e-01	k: 7666	n:40000
COL4A5   40000 perm   10 sec   (3968 perm/sec)   p_kst 1.916500e-01   p_cons 3.822500e-02   p_joint 6.412500e-02

Outputting figure to mutsig2_images.part000000000041/COL4A5.19_5273_40000_0.19165_0.038225_0.064125.png
                gene_name: COL4A5
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.067 

Current progress: 11 percent done.
COL1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.817083e-02	ci left: 6.500161e-01	ci right 6.686910e-01	k: 6594	n:10000
Cons ci ratio: 3.329911e-02	ci left: 5.710566e-01	ci right 5.904963e-01	k: 5808	n:10000
KS ci ratio: 4.932590e-02	ci left: 3.774378e-01	ci right 3.966281e-01	k: 3870	n:10000
COL1A2   10000 perm   2 sec   (4925 perm/sec)   p_kst 3.870000e-01   p_cons 5.808000e-01   p_joint 6.594000e-01

Outputting figure to mutsig2_images.part000000000041/COL1A2.16_4309_10000_0.387_0.5808_0.6594.png
                gene_name: COL1A2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 13 percent done.
COL4A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.038389e-02	ci left: 9.294731e-01	ci right 9.392720e-01	k: 9345	n:10000
Cons ci ratio: 3.152538e-02	ci left: 5.975480e-01	ci right 6.167896e-01	k: 6072	n:10000
KS ci ratio: 1.450598e-02	ci left: 8.730609e-01	ci right 8.859171e-01	k: 8796	n:10000
COL4A6   10000 perm   2 sec   (4318 perm/sec)   p_kst 8.796000e-01   p_cons 6.072000e-01   p_joint 9.345000e-01

Outputting figure to mutsig2_images.part000000000041/COL4A6.15_5271_10000_0.8796_0.6072_0.9345.png
                gene_name: COL4A6
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 14 percent done.
COL5A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.155120e-02	ci left: 7.594982e-01	ci right 7.761455e-01	k: 7679	n:10000
Cons ci ratio: 3.966721e-02	ci left: 4.841538e-01	ci right 5.038497e-01	k: 4940	n:10000
KS ci ratio: 1.552846e-02	ci left: 8.575336e-01	ci right 8.710534e-01	k: 8644	n:10000
COL5A1   10000 perm   2 sec   (4192 perm/sec)   p_kst 8.644000e-01   p_cons 4.940000e-01   p_joint 7.679000e-01

Outputting figure to mutsig2_images.part000000000041/COL5A1.15_5781_10000_0.8644_0.494_0.7679.png
                gene_name: COL5A1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 16 percent done.
COL4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.869635e-02	ci left: 1.561040e-01	ci right 1.706926e-01	k: 1633	n:10000
Cons ci ratio: 4.433266e-02	ci left: 4.289432e-01	ci right 4.484926e-01	k: 4387	n:10000
KS ci ratio: 1.119563e-01	ci left: 1.030540e-01	ci right 1.153747e-01	k: 1091	n:10000
COL4A1   10000 perm   2 sec   (4717 perm/sec)   p_kst 1.091000e-01   p_cons 4.387000e-01   p_joint 1.633000e-01

Joint ci ratio: 6.530511e-02	ci left: 1.476420e-01	ci right 1.576592e-01	k: 3052	n:20000
Cons ci ratio: 3.133794e-02	ci left: 4.320067e-01	ci right 4.458111e-01	k: 8778	n:20000
KS ci ratio: 8.190841e-02	ci left: 9.852583e-02	ci right 1.069901e-01	k: 2054	n:20000
COL4A1   20000 perm   5 sec   (4282 perm/sec)   p_kst 1.027000e-01   p_cons 4.389000e-01   p_joint 1.526000e-01

Outputting figure to mutsig2_images.part000000000041/COL4A1.14_5218_20000_0.1027_0.4389_0.1526.png
                gene_name: COL4A1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 17 percent done.
COL27A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.980390e-01	ci left: 3.395684e-02	ci right 4.151552e-02	k: 376	n:10000
Cons ci ratio: 2.631022e-02	ci left: 6.802263e-01	ci right 6.984633e-01	k: 6894	n:10000
KS ci ratio: 5.003467e-01	ci left: 4.581663e-03	ci right 7.716529e-03	k: 60	n:10000
COL27A1   10000 perm   2 sec   (4234 perm/sec)   p_kst 6.000000e-03   p_cons 6.894000e-01   p_joint 3.760000e-02

Joint ci ratio: 1.636116e-01	ci left: 2.561344e-02	ci right 3.022518e-02	k: 557	n:20000
Cons ci ratio: 1.848101e-02	ci left: 6.858006e-01	ci right 6.986435e-01	k: 13845	n:20000
KS ci ratio: 3.467290e-01	ci left: 5.250702e-03	ci right 7.496443e-03	k: 126	n:20000
COL27A1   20000 perm   5 sec   (3902 perm/sec)   p_kst 6.300000e-03   p_cons 6.922500e-01   p_joint 2.785000e-02

Joint ci ratio: 1.621863e-01	ci left: 1.754916e-02	ci right 2.067829e-02	k: 572	n:30000
Cons ci ratio: 1.518492e-02	ci left: 6.842963e-01	ci right 6.948003e-01	k: 20687	n:30000
KS ci ratio: 2.896822e-01	ci left: 5.188478e-03	ci right 6.975876e-03	k: 181	n:30000
COL27A1   30000 perm   8 sec   (3773 perm/sec)   p_kst 6.033333e-03   p_cons 6.895667e-01   p_joint 1.906667e-02

Joint ci ratio: 1.411185e-01	ci left: 1.758805e-02	ci right 2.028243e-02	k: 756	n:40000
Cons ci ratio: 1.308281e-02	ci left: 6.872235e-01	ci right 6.962986e-01	k: 27671	n:40000
KS ci ratio: 2.404589e-01	ci left: 5.806474e-03	ci right 7.416412e-03	k: 263	n:40000
COL27A1   40000 perm   11 sec   (3680 perm/sec)   p_kst 6.575000e-03   p_cons 6.917750e-01   p_joint 1.890000e-02

Joint ci ratio: 1.274793e-01	ci left: 1.737564e-02	ci right 1.976072e-02	k: 927	n:50000
Cons ci ratio: 1.170097e-02	ci left: 6.877316e-01	ci right 6.958461e-01	k: 34590	n:50000
KS ci ratio: 2.140960e-01	ci left: 5.946893e-03	ci right 7.391279e-03	k: 332	n:50000
COL27A1   50000 perm   14 sec   (3615 perm/sec)   p_kst 6.640000e-03   p_cons 6.918000e-01   p_joint 1.854000e-02

Joint ci ratio: 1.295359e-01	ci left: 1.405871e-02	ci right 1.602194e-02	k: 901	n:60000
Cons ci ratio: 1.067816e-02	ci left: 6.882215e-01	ci right 6.956266e-01	k: 41516	n:60000
KS ci ratio: 1.973404e-01	ci left: 5.888473e-03	ci right 7.193280e-03	k: 391	n:60000
COL27A1   60000 perm   17 sec   (3556 perm/sec)   p_kst 6.516667e-03   p_cons 6.919333e-01   p_joint 1.501667e-02

Joint ci ratio: 1.092139e-01	ci left: 1.708358e-02	ci right 1.907094e-02	k: 1264	n:70000
Cons ci ratio: 9.875910e-03	ci left: 6.889375e-01	ci right 6.957894e-01	k: 48466	n:70000
KS ci ratio: 1.811796e-01	ci left: 6.040827e-03	ci right 7.257753e-03	k: 464	n:70000
COL27A1   70000 perm   20 sec   (3443 perm/sec)   p_kst 6.628571e-03   p_cons 6.923714e-01   p_joint 1.805714e-02

Joint ci ratio: 1.059440e-01	ci left: 1.593289e-02	ci right 1.772740e-02	k: 1345	n:80000
Cons ci ratio: 9.238271e-03	ci left: 6.891512e-01	ci right 6.955598e-01	k: 55389	n:80000
KS ci ratio: 1.692264e-01	ci left: 6.098497e-03	ci right 7.237722e-03	k: 532	n:80000
COL27A1   80000 perm   24 sec   (3371 perm/sec)   p_kst 6.650000e-03   p_cons 6.923625e-01   p_joint 1.681250e-02

Joint ci ratio: 1.085699e-01	ci left: 1.350204e-02	ci right 1.506283e-02	k: 1284	n:90000
Cons ci ratio: 8.707803e-03	ci left: 6.894400e-01	ci right 6.954809e-01	k: 62322	n:90000
KS ci ratio: 1.616827e-01	ci left: 5.964062e-03	ci right 7.023679e-03	k: 583	n:90000
COL27A1   90000 perm   27 sec   (3333 perm/sec)   p_kst 6.477778e-03   p_cons 6.924667e-01   p_joint 1.426667e-02

Joint ci ratio: 9.381380e-02	ci left: 1.635435e-02	ci right 1.797383e-02	k: 1715	n:100000
Cons ci ratio: 8.248865e-03	ci left: 6.902209e-01	ci right 6.959479e-01	k: 69309	n:100000
KS ci ratio: 1.520807e-01	ci left: 6.097872e-03	ci right 7.111065e-03	k: 659	n:100000
COL27A1   100000 perm   30 sec   (3296 perm/sec)   p_kst 6.590000e-03   p_cons 6.930900e-01   p_joint 1.715000e-02

Joint ci ratio: 9.017002e-02	ci left: 1.612872e-02	ci right 1.766054e-02	k: 1857	n:110000
Cons ci ratio: 7.852873e-03	ci left: 6.910119e-01	ci right 6.964688e-01	k: 76312	n:110000
KS ci ratio: 1.454071e-01	ci left: 6.086182e-03	ci right 7.049202e-03	k: 721	n:110000
COL27A1   110000 perm   34 sec   (3253 perm/sec)   p_kst 6.554545e-03   p_cons 6.937455e-01   p_joint 1.688182e-02

Joint ci ratio: 9.232622e-02	ci left: 1.411623e-02	ci right 1.549070e-02	k: 1775	n:120000
Cons ci ratio: 7.514791e-03	ci left: 6.913421e-01	ci right 6.965652e-01	k: 83275	n:120000
KS ci ratio: 1.403545e-01	ci left: 6.004862e-03	ci right 6.919235e-03	k: 774	n:120000
COL27A1   120000 perm   38 sec   (3200 perm/sec)   p_kst 6.450000e-03   p_cons 6.939583e-01   p_joint 1.479167e-02

Joint ci ratio: 9.131677e-02	ci left: 1.333826e-02	ci right 1.462201e-02	k: 1816	n:130000
Cons ci ratio: 7.215611e-03	ci left: 6.917027e-01	ci right 6.967194e-01	k: 90248	n:130000
KS ci ratio: 1.373045e-01	ci left: 5.802787e-03	ci right 6.665615e-03	k: 809	n:130000
COL27A1   130000 perm   41 sec   (3170 perm/sec)   p_kst 6.223077e-03   p_cons 6.942154e-01   p_joint 1.396923e-02

Joint ci ratio: 8.230906e-02	ci left: 1.528622e-02	ci right 1.660537e-02	k: 2231	n:140000
Cons ci ratio: 6.952806e-03	ci left: 6.918147e-01	ci right 6.966487e-01	k: 97193	n:140000
KS ci ratio: 1.326399e-01	ci left: 5.788598e-03	ci right 6.617768e-03	k: 867	n:140000
COL27A1   140000 perm   45 sec   (3139 perm/sec)   p_kst 6.192857e-03   p_cons 6.942357e-01   p_joint 1.593571e-02

Joint ci ratio: 7.684213e-02	ci left: 1.639761e-02	ci right 1.771449e-02	k: 2557	n:150000
Cons ci ratio: 6.714557e-03	ci left: 6.920550e-01	ci right 6.967241e-01	k: 104159	n:150000
KS ci ratio: 1.303465e-01	ci left: 5.602524e-03	ci right 6.390089e-03	k: 898	n:150000
COL27A1   150000 perm   48 sec   (3108 perm/sec)   p_kst 5.986667e-03   p_cons 6.943933e-01   p_joint 1.704667e-02

Joint ci ratio: 7.275820e-02	ci left: 1.717001e-02	ci right 1.847254e-02	k: 2850	n:160000
Cons ci ratio: 6.505646e-03	ci left: 6.918481e-01	ci right 6.963699e-01	k: 111058	n:160000
KS ci ratio: 1.257422e-01	ci left: 5.657715e-03	ci right 6.422851e-03	k: 965	n:160000
COL27A1   160000 perm   52 sec   (3076 perm/sec)   p_kst 6.031250e-03   p_cons 6.941125e-01   p_joint 1.781250e-02

Joint ci ratio: 7.232120e-02	ci left: 1.637347e-02	ci right 1.760779e-02	k: 2887	n:170000
Cons ci ratio: 6.315438e-03	ci left: 6.916440e-01	ci right 6.960317e-01	k: 117953	n:170000
KS ci ratio: 1.221301e-01	ci left: 5.655507e-03	ci right 6.396785e-03	k: 1023	n:170000
COL27A1   170000 perm   56 sec   (3046 perm/sec)   p_kst 6.017647e-03   p_cons 6.938412e-01   p_joint 1.698235e-02

Joint ci ratio: 6.919672e-02	ci left: 1.691017e-02	ci right 1.812766e-02	k: 3152	n:180000
Cons ci ratio: 6.135049e-03	ci left: 6.918764e-01	ci right 6.961396e-01	k: 124922	n:180000
KS ci ratio: 1.131629e-01	ci left: 6.247320e-03	ci right 7.002036e-03	k: 1191	n:180000
COL27A1   180000 perm   60 sec   (3016 perm/sec)   p_kst 6.616667e-03   p_cons 6.940111e-01   p_joint 1.751111e-02

Joint ci ratio: 6.623728e-02	ci left: 1.750011e-02	ci right 1.870413e-02	k: 3438	n:190000
Cons ci ratio: 5.977126e-03	ci left: 6.915268e-01	ci right 6.956778e-01	k: 131785	n:190000
KS ci ratio: 1.103312e-01	ci left: 6.235706e-03	ci right 6.968943e-03	k: 1253	n:190000
COL27A1   190000 perm   64 sec   (2982 perm/sec)   p_kst 6.594737e-03   p_cons 6.936053e-01   p_joint 1.809474e-02

Joint ci ratio: 6.493564e-02	ci left: 1.731357e-02	ci right 1.848046e-02	k: 3578	n:200000
Cons ci ratio: 5.825238e-03	ci left: 6.916194e-01	ci right 6.956650e-01	k: 138729	n:200000
KS ci ratio: 1.077844e-01	ci left: 6.215734e-03	ci right 6.928680e-03	k: 1313	n:200000
COL27A1   200000 perm   68 sec   (2949 perm/sec)   p_kst 6.565000e-03   p_cons 6.936450e-01   p_joint 1.789000e-02

Joint ci ratio: 6.472505e-02	ci left: 1.661072e-02	ci right 1.772647e-02	k: 3604	n:210000
Cons ci ratio: 5.677173e-03	ci left: 6.922434e-01	ci right 6.961893e-01	k: 145786	n:210000
KS ci ratio: 1.052137e-01	ci left: 6.221027e-03	ci right 6.916508e-03	k: 1378	n:210000
COL27A1   210000 perm   72 sec   (2912 perm/sec)   p_kst 6.561905e-03   p_cons 6.942190e-01   p_joint 1.716190e-02

Joint ci ratio: 6.515617e-02	ci left: 1.565869e-02	ci right 1.671775e-02	k: 3560	n:220000
Cons ci ratio: 5.548380e-03	ci left: 6.921560e-01	ci right 6.960116e-01	k: 152699	n:220000
KS ci ratio: 1.025686e-01	ci left: 6.257028e-03	ci right 6.937888e-03	k: 1450	n:220000
COL27A1   220000 perm   76 sec   (2888 perm/sec)   p_kst 6.590909e-03   p_cons 6.940864e-01   p_joint 1.618182e-02

Joint ci ratio: 6.492990e-02	ci left: 1.509321e-02	ci right 1.611035e-02	k: 3587	n:230000
Cons ci ratio: 5.426638e-03	ci left: 6.921818e-01	ci right 6.959525e-01	k: 159636	n:230000
KS ci ratio: 9.991553e-02	ci left: 6.315536e-03	ci right 6.983944e-03	k: 1528	n:230000
COL27A1   230000 perm   80 sec   (2861 perm/sec)   p_kst 6.643478e-03   p_cons 6.940696e-01   p_joint 1.559565e-02

Outputting figure to mutsig2_images.part000000000041/COL27A1.13_5827_230000_0.0066435_0.69407_0.015596.png
                gene_name: COL27A1
               theta_stop: 0.100 
                    nperm: 230000 
                     p_ks: 0.0066 
        ci_ks_bounds_left: 0.0063 
       ci_ks_bounds_right: 0.0070 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 19 percent done.
COL5A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.688723e-02	ci left: 1.983069e-01	ci right 2.142646e-01	k: 2062	n:10000
Cons ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
KS ci ratio: 5.443389e-02	ci left: 3.321036e-01	ci right 3.507889e-01	k: 3414	n:10000
COL5A2   10000 perm   2 sec   (4574 perm/sec)   p_kst 3.414000e-01   p_cons 1.277000e-01   p_joint 2.062000e-01

Joint ci ratio: 4.613284e-02	ci left: 2.590915e-01	ci right 2.713768e-01	k: 5304	n:20000
Cons ci ratio: 6.643894e-02	ci left: 1.433023e-01	ci right 1.532002e-01	k: 2964	n:20000
KS ci ratio: 3.812962e-02	ci left: 3.391065e-01	ci right 3.523384e-01	k: 6914	n:20000
COL5A2   20000 perm   5 sec   (4225 perm/sec)   p_kst 3.457000e-01   p_cons 1.482000e-01   p_joint 2.652000e-01

Outputting figure to mutsig2_images.part000000000041/COL5A2.13_4716_20000_0.3457_0.1482_0.2652.png
                gene_name: COL5A2
               theta_stop: 0.066 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 21 percent done.
COL7A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.321513e-02	ci left: 8.919018e-01	ci right 9.038653e-01	k: 8980	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
COL7A1   10000 perm   3 sec   (3546 perm/sec)   p_kst 1   p_cons 8.980000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COL7A1.13_9307_10000_1_0.898_1.png
                gene_name: COL7A1
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
COL3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.906036e-02	ci left: 8.009530e-01	ci right 8.164667e-01	k: 8088	n:10000
Cons ci ratio: 1.412003e-02	ci left: 8.787895e-01	ci right 8.913852e-01	k: 8852	n:10000
KS ci ratio: 3.441262e-02	ci left: 5.549149e-01	ci right 5.744474e-01	k: 5647	n:10000
COL3A1   10000 perm   2 sec   (4626 perm/sec)   p_kst 5.647000e-01   p_cons 8.852000e-01   p_joint 8.088000e-01

Outputting figure to mutsig2_images.part000000000041/COL3A1.12_4605_10000_0.5647_0.8852_0.8088.png
                gene_name: COL3A1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 24 percent done.
COBLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.052552e-01	ci left: 1.153530e-01	ci right 1.282683e-01	k: 1217	n:10000
Cons ci ratio: 7.164216e-02	ci left: 2.220775e-01	ci right 2.386798e-01	k: 2303	n:10000
KS ci ratio: 9.194552e-02	ci left: 1.466828e-01	ci right 1.609195e-01	k: 1537	n:10000
COBLL1   10000 perm   2 sec   (5431 perm/sec)   p_kst 1.537000e-01   p_cons 2.303000e-01   p_joint 1.217000e-01

Joint ci ratio: 7.434114e-02	ci left: 1.174943e-01	ci right 1.266159e-01	k: 2440	n:20000
Cons ci ratio: 5.120811e-02	ci left: 2.207637e-01	ci right 2.324159e-01	k: 4531	n:20000
KS ci ratio: 6.512897e-02	ci left: 1.483326e-01	ci right 1.583684e-01	k: 3066	n:20000
COBLL1   20000 perm   4 sec   (4930 perm/sec)   p_kst 1.533000e-01   p_cons 2.265500e-01   p_joint 1.220000e-01

Outputting figure to mutsig2_images.part000000000041/COBLL1.11_3557_20000_0.1533_0.22655_0.122.png
                gene_name: COBLL1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 25 percent done.
COL11A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.349480e-02	ci left: 7.269395e-01	ci right 7.443230e-01	k: 7357	n:10000
Cons ci ratio: 1.463571e-02	ci left: 8.711183e-01	ci right 8.840608e-01	k: 8777	n:10000
KS ci ratio: 3.434269e-02	ci left: 5.559172e-01	ci right 5.754445e-01	k: 5657	n:10000
COL11A2   10000 perm   2 sec   (4491 perm/sec)   p_kst 5.657000e-01   p_cons 8.777000e-01   p_joint 7.357000e-01

Outputting figure to mutsig2_images.part000000000041/COL11A2.11_5550_10000_0.5657_0.8777_0.7357.png
                gene_name: COL11A2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 27 percent done.
COL15A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.594306e-02	ci left: 2.524128e-01	ci right 2.697266e-01	k: 2610	n:10000
Cons ci ratio: 1.732451e-01	ci left: 4.446748e-02	ci right 5.299787e-02	k: 486	n:10000
KS ci ratio: 3.395993e-02	ci left: 5.614305e-01	ci right 5.809280e-01	k: 5712	n:10000
COL15A1   10000 perm   2 sec   (5017 perm/sec)   p_kst 5.712000e-01   p_cons 4.860000e-02   p_joint 2.610000e-01

Joint ci ratio: 7.100076e-02	ci left: 1.275345e-01	ci right 1.369727e-01	k: 2644	n:20000
Cons ci ratio: 1.221107e-01	ci left: 4.600048e-02	ci right 5.203150e-02	k: 979	n:20000
KS ci ratio: 2.446384e-02	ci left: 5.551905e-01	ci right 5.689914e-01	k: 11242	n:20000
COL15A1   20000 perm   4 sec   (4583 perm/sec)   p_kst 5.621000e-01   p_cons 4.895000e-02   p_joint 1.322000e-01

Joint ci ratio: 6.330258e-02	ci left: 1.097342e-01	ci right 1.169408e-01	k: 3399	n:30000
Cons ci ratio: 1.052841e-01	ci left: 4.183673e-02	ci right 4.651873e-02	k: 1324	n:30000
KS ci ratio: 1.939836e-02	ci left: 5.708514e-01	ci right 5.820671e-01	k: 17294	n:30000
COL15A1   30000 perm   7 sec   (4365 perm/sec)   p_kst 5.764667e-01   p_cons 4.413333e-02   p_joint 1.133000e-01

Joint ci ratio: 5.148623e-02	ci left: 1.233066e-01	ci right 1.298478e-01	k: 5062	n:40000
Cons ci ratio: 9.095482e-02	ci left: 4.235314e-02	ci right 4.641334e-02	k: 1774	n:40000
KS ci ratio: 1.678301e-02	ci left: 5.720905e-01	ci right 5.817983e-01	k: 23078	n:40000
COL15A1   40000 perm   10 sec   (4178 perm/sec)   p_kst 5.769500e-01   p_cons 4.435000e-02   p_joint 1.265500e-01

Outputting figure to mutsig2_images.part000000000041/COL15A1.11_4335_40000_0.57695_0.04435_0.12655.png
                gene_name: COL15A1
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 29 percent done.
COL1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.123819e-03	ci left: 9.548231e-01	ci right 9.627068e-01	k: 9589	n:10000
Cons ci ratio: 3.710244e-02	ci left: 5.175581e-01	ci right 5.372259e-01	k: 5274	n:10000
KS ci ratio: 7.009630e-03	ci left: 9.655188e-01	ci right 9.724045e-01	k: 9691	n:10000
COL1A1   10000 perm   2 sec   (4698 perm/sec)   p_kst 9.691000e-01   p_cons 5.274000e-01   p_joint 9.589000e-01

Outputting figure to mutsig2_images.part000000000041/COL1A1.11_4599_10000_0.9691_0.5274_0.9589.png
                gene_name: COL1A1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 30 percent done.
COL21A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.800946e-02	ci left: 1.311004e-01	ci right 1.447113e-01	k: 1378	n:10000
Cons ci ratio: 2.651309e-02	ci left: 6.769010e-01	ci right 6.951905e-01	k: 6861	n:10000
KS ci ratio: 1.268230e-01	ci left: 8.164409e-02	ci right 9.279774e-02	k: 871	n:10000
COL21A1   10000 perm   2 sec   (4903 perm/sec)   p_kst 8.710000e-02   p_cons 6.861000e-01   p_joint 1.378000e-01

Joint ci ratio: 6.722610e-02	ci left: 1.403936e-01	ci right 1.502098e-01	k: 2905	n:20000
Cons ci ratio: 1.860471e-02	ci left: 6.829347e-01	ci right 6.958102e-01	k: 13788	n:20000
KS ci ratio: 8.865284e-02	ci left: 8.508867e-02	ci right 9.303127e-02	k: 1780	n:20000
COL21A1   20000 perm   4 sec   (4732 perm/sec)   p_kst 8.900000e-02   p_cons 6.894000e-01   p_joint 1.452500e-01

Outputting figure to mutsig2_images.part000000000041/COL21A1.10_2990_20000_0.089_0.6894_0.14525.png
                gene_name: COL21A1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 32 percent done.
COL4A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.403543e-02	ci left: 1.711374e-01	ci right 1.862502e-01	k: 1786	n:10000
Cons ci ratio: 1.522255e-02	ci left: 8.622295e-01	ci right 8.755548e-01	k: 8690	n:10000
KS ci ratio: 1.134786e-01	ci left: 1.005192e-01	ci right 1.127110e-01	k: 1065	n:10000
COL4A4   10000 perm   2 sec   (4724 perm/sec)   p_kst 1.065000e-01   p_cons 8.690000e-01   p_joint 1.786000e-01

Joint ci ratio: 5.889187e-02	ci left: 1.759822e-01	ci right 1.867106e-01	k: 3626	n:20000
Cons ci ratio: 1.088087e-02	ci left: 8.617080e-01	ci right 8.711851e-01	k: 17330	n:20000
KS ci ratio: 8.114045e-02	ci left: 1.002440e-01	ci right 1.087714e-01	k: 2089	n:20000
COL4A4   20000 perm   5 sec   (4442 perm/sec)   p_kst 1.044500e-01   p_cons 8.665000e-01   p_joint 1.813000e-01

Outputting figure to mutsig2_images.part000000000041/COL4A4.10_5261_20000_0.10445_0.8665_0.1813.png
                gene_name: COL4A4
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 33 percent done.
COL5A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.168419e-02	ci left: 5.951385e-01	ci right 6.144005e-01	k: 6048	n:10000
Cons ci ratio: 9.804254e-03	ci left: 9.364092e-01	ci right 9.457318e-01	k: 9412	n:10000
KS ci ratio: 3.827232e-02	ci left: 5.020507e-01	ci right 5.217424e-01	k: 5119	n:10000
COL5A3   10000 perm   2 sec   (4629 perm/sec)   p_kst 5.119000e-01   p_cons 9.412000e-01   p_joint 6.048000e-01

Outputting figure to mutsig2_images.part000000000041/COL5A3.10_5506_10000_0.5119_0.9412_0.6048.png
                gene_name: COL5A3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 35 percent done.
COL24A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.803364e-03	ci left: 9.827447e-01	ci right 9.875666e-01	k: 9853	n:10000
KS ci ratio: 1.843563e-02	ci left: 8.112097e-01	ci right 8.264042e-01	k: 8189	n:10000
COL24A1   10000 perm   2 sec   (4752 perm/sec)   p_kst 8.189000e-01   p_cons 9.853000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COL24A1.9_5385_10000_0.8189_0.9853_1.png
                gene_name: COL24A1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
COL2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.433722e-02	ci left: 3.328981e-01	ci right 3.515939e-01	k: 3422	n:10000
Cons ci ratio: 7.094230e-02	ci left: 2.255330e-01	ci right 2.422223e-01	k: 2338	n:10000
KS ci ratio: 3.793680e-02	ci left: 5.064518e-01	ci right 5.261387e-01	k: 5163	n:10000
COL2A1   10000 perm   2 sec   (4738 perm/sec)   p_kst 5.163000e-01   p_cons 2.338000e-01   p_joint 3.422000e-01

Outputting figure to mutsig2_images.part000000000041/COL2A1.9_4680_10000_0.5163_0.2338_0.3422.png
                gene_name: COL2A1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 38 percent done.
COLEC12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.871119e-02	ci left: 4.963503e-01	ci right 5.160461e-01	k: 5062	n:10000
Cons ci ratio: 3.424497e-02	ci left: 5.573205e-01	ci right 5.768404e-01	k: 5671	n:10000
KS ci ratio: 5.092200e-02	ci left: 3.625152e-01	ci right 3.815594e-01	k: 3720	n:10000
COLEC12   10000 perm   2 sec   (5614 perm/sec)   p_kst 3.720000e-01   p_cons 5.671000e-01   p_joint 5.062000e-01

Outputting figure to mutsig2_images.part000000000041/COLEC12.9_2269_10000_0.372_0.5671_0.5062.png
                gene_name: COLEC12
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 40 percent done.
COPB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.451118e-02	ci left: 7.099764e-01	ci right 7.276960e-01	k: 7189	n:10000
Cons ci ratio: 4.607595e-02	ci left: 4.101016e-01	ci right 4.295451e-01	k: 4198	n:10000
KS ci ratio: 2.248696e-02	ci left: 7.438177e-01	ci right 7.608351e-01	k: 7524	n:10000
COPB1   10000 perm   2 sec   (5144 perm/sec)   p_kst 7.524000e-01   p_cons 4.198000e-01   p_joint 7.189000e-01

Outputting figure to mutsig2_images.part000000000041/COPB1.9_2946_10000_0.7524_0.4198_0.7189.png
                gene_name: COPB1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 41 percent done.
COL17A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.176417e-01	ci left: 1.261754e-02	ci right 1.747097e-02	k: 149	n:10000
Cons ci ratio: 5.123949e-02	ci left: 3.596312e-01	ci right 3.786451e-01	k: 3691	n:10000
KS ci ratio: 4.884054e-01	ci left: 4.844389e-03	ci right 8.053335e-03	k: 63	n:10000
COL17A1   10000 perm   2 sec   (4777 perm/sec)   p_kst 6.300000e-03   p_cons 3.691000e-01   p_joint 1.490000e-02

Joint ci ratio: 1.945223e-01	ci left: 1.796192e-02	ci right 2.187941e-02	k: 397	n:20000
Cons ci ratio: 3.635641e-02	ci left: 3.608627e-01	ci right 3.742758e-01	k: 7351	n:20000
KS ci ratio: 3.871372e-01	ci left: 4.115134e-03	ci right 6.132872e-03	k: 101	n:20000
COL17A1   20000 perm   5 sec   (4300 perm/sec)   p_kst 5.050000e-03   p_cons 3.675500e-01   p_joint 1.985000e-02

Joint ci ratio: 2.028049e-01	ci left: 1.105183e-02	ci right 1.357727e-02	k: 368	n:30000
Cons ci ratio: 2.848207e-02	ci left: 3.814830e-01	ci right 3.925389e-01	k: 11610	n:30000
KS ci ratio: 3.130289e-01	ci left: 4.386948e-03	ci right 6.044432e-03	k: 155	n:30000
COL17A1   30000 perm   7 sec   (4271 perm/sec)   p_kst 5.166667e-03   p_cons 3.870000e-01   p_joint 1.226667e-02

Joint ci ratio: 1.967616e-01	ci left: 8.857849e-03	ci right 1.081430e-02	k: 392	n:40000
Cons ci ratio: 2.472780e-02	ci left: 3.810505e-01	ci right 3.906161e-01	k: 15433	n:40000
KS ci ratio: 2.778885e-01	ci left: 4.262604e-03	ci right 5.660752e-03	k: 197	n:40000
COL17A1   40000 perm   9 sec   (4225 perm/sec)   p_kst 4.925000e-03   p_cons 3.858250e-01   p_joint 9.800000e-03

Joint ci ratio: 1.635410e-01	ci left: 1.043036e-02	ci right 1.230702e-02	k: 567	n:50000
Cons ci ratio: 2.217658e-02	ci left: 3.802926e-01	ci right 3.888408e-01	k: 19228	n:50000
KS ci ratio: 2.508538e-01	ci left: 4.250575e-03	ci right 5.487988e-03	k: 242	n:50000
COL17A1   50000 perm   12 sec   (4170 perm/sec)   p_kst 4.840000e-03   p_cons 3.845600e-01   p_joint 1.134000e-02

Joint ci ratio: 1.481530e-01	ci left: 1.067829e-02	ci right 1.240277e-02	k: 691	n:60000
Cons ci ratio: 2.151881e-02	ci left: 3.522672e-01	ci right 3.599467e-01	k: 21366	n:60000
KS ci ratio: 2.250004e-01	ci left: 4.467073e-03	ci right 5.614940e-03	k: 301	n:60000
COL17A1   60000 perm   15 sec   (4117 perm/sec)   p_kst 5.016667e-03   p_cons 3.561000e-01   p_joint 1.151667e-02

Joint ci ratio: 1.405792e-01	ci left: 1.021293e-02	ci right 1.177086e-02	k: 768	n:70000
Cons ci ratio: 1.993755e-02	ci left: 3.522095e-01	ci right 3.593167e-01	k: 24903	n:70000
KS ci ratio: 2.066465e-01	ci left: 4.585774e-03	ci right 5.655881e-03	k: 357	n:70000
COL17A1   70000 perm   17 sec   (4067 perm/sec)   p_kst 5.100000e-03   p_cons 3.557571e-01   p_joint 1.097143e-02

Joint ci ratio: 1.485860e-01	ci left: 7.983811e-03	ci right 9.277202e-03	k: 689	n:80000
Cons ci ratio: 1.793052e-02	ci left: 3.706329e-01	ci right 3.773512e-01	k: 29919	n:80000
KS ci ratio: 1.926254e-01	ci left: 4.653861e-03	ci right 5.657541e-03	k: 411	n:80000
COL17A1   80000 perm   20 sec   (4014 perm/sec)   p_kst 5.137500e-03   p_cons 3.739875e-01   p_joint 8.612500e-03

Joint ci ratio: 1.051755e-01	ci left: 1.439995e-02	ci right 1.600929e-02	k: 1367	n:90000
Cons ci ratio: 1.728736e-02	ci left: 3.604340e-01	ci right 3.667304e-01	k: 32722	n:90000
KS ci ratio: 1.827019e-01	ci left: 4.623870e-03	ci right 5.564020e-03	k: 457	n:90000
COL17A1   90000 perm   23 sec   (3963 perm/sec)   p_kst 5.077778e-03   p_cons 3.635778e-01   p_joint 1.518889e-02

Joint ci ratio: 1.150793e-01	ci left: 1.080951e-02	ci right 1.213905e-02	k: 1146	n:100000
Cons ci ratio: 1.641189e-02	ci left: 3.602682e-01	ci right 3.662397e-01	k: 36325	n:100000
KS ci ratio: 1.733073e-01	ci left: 4.648776e-03	ci right 5.540302e-03	k: 508	n:100000
COL17A1   100000 perm   26 sec   (3835 perm/sec)   p_kst 5.080000e-03   p_cons 3.632500e-01   p_joint 1.146000e-02

Joint ci ratio: 1.006913e-01	ci left: 1.290611e-02	ci right 1.428335e-02	k: 1494	n:110000
Cons ci ratio: 1.564739e-02	ci left: 3.604297e-01	ci right 3.661230e-01	k: 39960	n:110000
KS ci ratio: 1.624796e-01	ci left: 4.835844e-03	ci right 5.699648e-03	k: 578	n:110000
COL17A1   110000 perm   29 sec   (3793 perm/sec)   p_kst 5.254545e-03   p_cons 3.632727e-01   p_joint 1.358182e-02

Joint ci ratio: 9.847300e-02	ci left: 1.239112e-02	ci right 1.368257e-02	k: 1563	n:120000
Cons ci ratio: 1.496932e-02	ci left: 3.609191e-01	ci right 3.663708e-01	k: 43637	n:120000
KS ci ratio: 1.542950e-01	ci left: 4.937078e-03	ci right 5.770435e-03	k: 641	n:120000
COL17A1   120000 perm   32 sec   (3756 perm/sec)   p_kst 5.341667e-03   p_cons 3.636417e-01   p_joint 1.302500e-02

Joint ci ratio: 9.461926e-02	ci left: 1.241382e-02	ci right 1.365420e-02	k: 1693	n:130000
Cons ci ratio: 1.438456e-02	ci left: 3.609459e-01	ci right 3.661832e-01	k: 47263	n:130000
KS ci ratio: 1.482955e-01	ci left: 4.949566e-03	ci right 5.749665e-03	k: 694	n:130000
COL17A1   130000 perm   35 sec   (3712 perm/sec)   p_kst 5.338462e-03   p_cons 3.635615e-01   p_joint 1.302308e-02

Joint ci ratio: 9.058330e-02	ci left: 1.260170e-02	ci right 1.380430e-02	k: 1847	n:140000
Cons ci ratio: 1.362456e-02	ci left: 3.690393e-01	ci right 3.741089e-01	k: 52020	n:140000
KS ci ratio: 1.422777e-01	ci left: 5.009033e-03	ci right 5.783098e-03	k: 754	n:140000
COL17A1   140000 perm   38 sec   (3666 perm/sec)   p_kst 5.385714e-03   p_cons 3.715714e-01   p_joint 1.319286e-02

Joint ci ratio: 9.130139e-02	ci left: 1.158540e-02	ci right 1.270024e-02	k: 1820	n:150000
Cons ci ratio: 1.316084e-02	ci left: 3.691870e-01	ci right 3.740846e-01	k: 55745	n:150000
KS ci ratio: 1.364336e-01	ci left: 5.099777e-03	ci right 5.852866e-03	k: 820	n:150000
COL17A1   150000 perm   41 sec   (3623 perm/sec)   p_kst 5.466667e-03   p_cons 3.716333e-01   p_joint 1.213333e-02

Joint ci ratio: 8.864274e-02	ci left: 1.153944e-02	ci right 1.261584e-02	k: 1931	n:160000
Cons ci ratio: 1.274829e-02	ci left: 3.690691e-01	ci right 3.738105e-01	k: 59430	n:160000
KS ci ratio: 1.312550e-01	ci left: 5.179746e-03	ci right 5.913346e-03	k: 886	n:160000
COL17A1   160000 perm   45 sec   (3580 perm/sec)   p_kst 5.537500e-03   p_cons 3.714375e-01   p_joint 1.206875e-02

Joint ci ratio: 8.654724e-02	ci left: 1.140720e-02	ci right 1.244484e-02	k: 2026	n:170000
Cons ci ratio: 1.236305e-02	ci left: 3.693139e-01	ci right 3.739140e-01	k: 63174	n:170000
KS ci ratio: 1.279131e-01	ci left: 5.142557e-03	ci right 5.850939e-03	k: 933	n:170000
COL17A1   170000 perm   48 sec   (3541 perm/sec)   p_kst 5.488235e-03   p_cons 3.716118e-01   p_joint 1.191765e-02

Joint ci ratio: 8.377828e-02	ci left: 1.151296e-02	ci right 1.252507e-02	k: 2162	n:180000
Cons ci ratio: 1.225046e-02	ci left: 3.603619e-01	ci right 3.648092e-01	k: 65265	n:180000
KS ci ratio: 1.235540e-01	ci left: 5.217388e-03	ci right 5.909794e-03	k: 1000	n:180000
COL17A1   180000 perm   51 sec   (3500 perm/sec)   p_kst 5.555556e-03   p_cons 3.625833e-01   p_joint 1.201111e-02

Joint ci ratio: 8.378551e-02	ci left: 1.091202e-02	ci right 1.187139e-02	k: 2163	n:190000
Cons ci ratio: 1.216281e-02	ci left: 3.513080e-01	ci right 3.556123e-01	k: 67157	n:190000
KS ci ratio: 1.208705e-01	ci left: 5.172383e-03	ci right 5.842840e-03	k: 1045	n:190000
COL17A1   190000 perm   55 sec   (3436 perm/sec)   p_kst 5.500000e-03   p_cons 3.534579e-01   p_joint 1.138421e-02

Joint ci ratio: 7.864423e-02	ci left: 1.178720e-02	ci right 1.275701e-02	k: 2453	n:200000
Cons ci ratio: 1.116751e-02	ci left: 3.790807e-01	ci right 3.833428e-01	k: 76242	n:200000
KS ci ratio: 1.176518e-01	ci left: 5.195116e-03	ci right 5.849341e-03	k: 1103	n:200000
COL17A1   200000 perm   59 sec   (3390 perm/sec)   p_kst 5.515000e-03   p_cons 3.812100e-01   p_joint 1.226500e-02

Joint ci ratio: 7.730823e-02	ci left: 1.162741e-02	ci right 1.256709e-02	k: 2539	n:210000
Cons ci ratio: 1.090059e-02	ci left: 3.790364e-01	ci right 3.831955e-01	k: 80034	n:210000
KS ci ratio: 1.148264e-01	ci left: 5.202021e-03	ci right 5.840316e-03	k: 1158	n:210000
COL17A1   210000 perm   63 sec   (3348 perm/sec)   p_kst 5.514286e-03   p_cons 3.811143e-01   p_joint 1.209048e-02

Joint ci ratio: 7.852700e-02	ci left: 1.075998e-02	ci right 1.164388e-02	k: 2463	n:220000
Cons ci ratio: 1.064701e-02	ci left: 3.792152e-01	ci right 3.832788e-01	k: 83874	n:220000
KS ci ratio: 1.126627e-01	ci left: 5.164286e-03	ci right 5.785217e-03	k: 1203	n:220000
COL17A1   220000 perm   67 sec   (3308 perm/sec)   p_kst 5.468182e-03   p_cons 3.812455e-01   p_joint 1.119545e-02

Joint ci ratio: 7.948087e-02	ci left: 1.004907e-02	ci right 1.088507e-02	k: 2406	n:230000
Cons ci ratio: 1.041216e-02	ci left: 3.792970e-01	ci right 3.832712e-01	k: 87695	n:230000
KS ci ratio: 1.099113e-01	ci left: 5.197591e-03	ci right 5.806277e-03	k: 1264	n:230000
COL17A1   230000 perm   70 sec   (3270 perm/sec)   p_kst 5.495652e-03   p_cons 3.812826e-01   p_joint 1.046087e-02

Joint ci ratio: 7.167878e-02	ci left: 1.186694e-02	ci right 1.275323e-02	k: 2953	n:240000
Cons ci ratio: 1.019265e-02	ci left: 3.793520e-01	ci right 3.832425e-01	k: 91511	n:240000
KS ci ratio: 1.075152e-01	ci left: 5.212069e-03	ci right 5.808302e-03	k: 1321	n:240000
COL17A1   240000 perm   74 sec   (3223 perm/sec)   p_kst 5.504167e-03   p_cons 3.812958e-01   p_joint 1.230417e-02

Joint ci ratio: 7.453111e-02	ci left: 1.053592e-02	ci right 1.135547e-02	k: 2735	n:250000
Cons ci ratio: 9.981220e-03	ci left: 3.796512e-01	ci right 3.834635e-01	k: 95389	n:250000
KS ci ratio: 1.054232e-01	ci left: 5.209941e-03	ci right 5.793614e-03	k: 1374	n:250000
COL17A1   250000 perm   78 sec   (3186 perm/sec)   p_kst 5.496000e-03   p_cons 3.815560e-01   p_joint 1.094000e-02

Joint ci ratio: 7.385443e-02	ci left: 1.032317e-02	ci right 1.111856e-02	k: 2786	n:260000
Cons ci ratio: 9.787359e-03	ci left: 3.796899e-01	ci right 3.834281e-01	k: 99205	n:260000
KS ci ratio: 1.033034e-01	ci left: 5.223069e-03	ci right 5.795732e-03	k: 1431	n:260000
COL17A1   260000 perm   83 sec   (3125 perm/sec)   p_kst 5.503846e-03   p_cons 3.815577e-01   p_joint 1.071538e-02

Joint ci ratio: 7.266689e-02	ci left: 1.027532e-02	ci right 1.105376e-02	k: 2878	n:270000
Cons ci ratio: 9.603770e-03	ci left: 3.797560e-01	ci right 3.834243e-01	k: 103029	n:270000
KS ci ratio: 1.011699e-01	ci left: 5.249774e-03	ci right 5.812772e-03	k: 1492	n:270000
COL17A1   270000 perm   87 sec   (3095 perm/sec)   p_kst 5.525926e-03   p_cons 3.815889e-01   p_joint 1.065926e-02

Joint ci ratio: 6.993453e-02	ci left: 1.070819e-02	ci right 1.148769e-02	k: 3106	n:280000
Cons ci ratio: 9.435993e-03	ci left: 3.795254e-01	ci right 3.831271e-01	k: 106771	n:280000
KS ci ratio: 9.945338e-02	ci left: 5.243336e-03	ci right 5.795546e-03	k: 1544	n:280000
COL17A1   280000 perm   91 sec   (3066 perm/sec)   p_kst 5.514286e-03   p_cons 3.813250e-01   p_joint 1.109286e-02

Outputting figure to mutsig2_images.part000000000041/COL17A1.8_4714_280000_0.0055143_0.38133_0.011093.png
                gene_name: COL17A1
               theta_stop: 0.099 
                    nperm: 280000 
                     p_ks: 0.0055 
        ci_ks_bounds_left: 0.0052 
       ci_ks_bounds_right: 0.0058 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.011 

Current progress: 43 percent done.
COL9A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.341748e-02	ci left: 4.392173e-01	ci right 4.588124e-01	k: 4490	n:10000
Cons ci ratio: 1.632709e-02	ci left: 8.450916e-01	ci right 8.591026e-01	k: 8522	n:10000
KS ci ratio: 6.180047e-02	ci left: 2.779488e-01	ci right 2.957755e-01	k: 2868	n:10000
COL9A1   10000 perm   2 sec   (5217 perm/sec)   p_kst 2.868000e-01   p_cons 8.522000e-01   p_joint 4.490000e-01

Outputting figure to mutsig2_images.part000000000041/COL9A1.8_2994_10000_0.2868_0.8522_0.449.png
                gene_name: COL9A1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 44 percent done.
COG7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.211284e-02	ci left: 7.500881e-01	ci right 7.669611e-01	k: 7586	n:10000
Cons ci ratio: 3.990594e-02	ci left: 4.811556e-01	ci right 5.008497e-01	k: 4910	n:10000
KS ci ratio: 3.027066e-02	ci left: 6.168328e-01	ci right 6.358936e-01	k: 6264	n:10000
COG7   10000 perm   2 sec   (5581 perm/sec)   p_kst 6.264000e-01   p_cons 4.910000e-01   p_joint 7.586000e-01

Outputting figure to mutsig2_images.part000000000041/COG7.6_2381_10000_0.6264_0.491_0.7586.png
                gene_name: COG7
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 46 percent done.
COL28A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.661754e-02	ci left: 8.405065e-01	ci right 8.546904e-01	k: 8477	n:10000
KS ci ratio: 1.961910e-02	ci left: 7.917190e-01	ci right 8.075061e-01	k: 7997	n:10000
COL28A1   10000 perm   2 sec   (5421 perm/sec)   p_kst 7.997000e-01   p_cons 8.477000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COL28A1.6_3514_10000_0.7997_0.8477_1.png
                gene_name: COL28A1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
COL16A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.195306e-01	ci left: 9.126730e-02	ci right 1.029686e-01	k: 970	n:10000
Cons ci ratio: 4.198959e-02	ci left: 4.557846e-01	ci right 4.754354e-01	k: 4656	n:10000
KS ci ratio: 1.888568e-01	ci left: 3.738868e-02	ci right 4.528136e-02	k: 412	n:10000
COL16A1   10000 perm   3 sec   (3873 perm/sec)   p_kst 4.120000e-02   p_cons 4.656000e-01   p_joint 9.700000e-02

Joint ci ratio: 7.572576e-02	ci left: 1.136581e-01	ci right 1.226533e-01	k: 2362	n:20000
Cons ci ratio: 3.031548e-02	ci left: 4.483801e-01	ci right 4.622329e-01	k: 9106	n:20000
KS ci ratio: 1.279133e-01	ci left: 4.197441e-02	ci right 4.775885e-02	k: 896	n:20000
COL16A1   20000 perm   5 sec   (4072 perm/sec)   p_kst 4.480000e-02   p_cons 4.553000e-01   p_joint 1.181000e-01

Joint ci ratio: 6.084644e-02	ci left: 1.178231e-01	ci right 1.252503e-01	k: 3645	n:30000
Cons ci ratio: 2.467680e-02	ci left: 4.511843e-01	ci right 4.624908e-01	k: 13705	n:30000
KS ci ratio: 1.057862e-01	ci left: 4.144684e-02	ci right 4.610870e-02	k: 1312	n:30000
COL16A1   30000 perm   7 sec   (4116 perm/sec)   p_kst 4.373333e-02   p_cons 4.568333e-01   p_joint 1.215000e-01

Joint ci ratio: 6.208679e-02	ci left: 8.780435e-02	ci right 9.345524e-02	k: 3624	n:40000
Cons ci ratio: 2.142530e-02	ci left: 4.506853e-01	ci right 4.604711e-01	k: 18223	n:40000
KS ci ratio: 9.160477e-02	ci left: 4.176625e-02	ci right 4.580032e-02	k: 1750	n:40000
COL16A1   40000 perm   10 sec   (4110 perm/sec)   p_kst 4.375000e-02   p_cons 4.555750e-01   p_joint 9.060000e-02

Outputting figure to mutsig2_images.part000000000041/COL16A1.5_5095_40000_0.04375_0.45558_0.0906.png
                gene_name: COL16A1
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.093 

Current progress: 49 percent done.
COL25A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.592170e-02	ci left: 1.361934e-01	ci right 1.500152e-01	k: 1430	n:10000
Cons ci ratio: 1.466975e-02	ci left: 8.706072e-01	ci right 8.835722e-01	k: 8772	n:10000
KS ci ratio: 1.331998e-01	ci left: 7.436791e-02	ci right 8.507844e-02	k: 796	n:10000
COL25A1   10000 perm   2 sec   (6391 perm/sec)   p_kst 7.960000e-02   p_cons 8.772000e-01   p_joint 1.430000e-01

Joint ci ratio: 7.063193e-02	ci left: 1.287164e-01	ci right 1.381905e-01	k: 2668	n:20000
Cons ci ratio: 1.060178e-02	ci left: 8.676968e-01	ci right 8.769946e-01	k: 17448	n:20000
KS ci ratio: 9.367852e-02	ci left: 7.671668e-02	ci right 8.430580e-02	k: 1609	n:20000
COL25A1   20000 perm   4 sec   (5595 perm/sec)   p_kst 8.045000e-02   p_cons 8.724000e-01   p_joint 1.334000e-01

Outputting figure to mutsig2_images.part000000000041/COL25A1.5_2193_20000_0.08045_0.8724_0.1334.png
                gene_name: COL25A1
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 51 percent done.
COPB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.982159e-02	ci left: 2.913250e-01	ci right 3.093915e-01	k: 3003	n:10000
KS ci ratio: 1.456068e-02	ci left: 8.722429e-01	ci right 8.851355e-01	k: 8788	n:10000
COPB2   10000 perm   2 sec   (5965 perm/sec)   p_kst 8.788000e-01   p_cons 3.003000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COPB2.5_2809_10000_0.8788_0.3003_1.png
                gene_name: COPB2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
COG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.239472e-02	ci left: 2.740864e-01	ci right 2.918402e-01	k: 2829	n:10000
Cons ci ratio: 1.990641e-02	ci left: 7.869522e-01	ci right 8.028756e-01	k: 7950	n:10000
KS ci ratio: 8.594478e-02	ci left: 1.647481e-01	ci right 1.796434e-01	k: 1721	n:10000
COG1   10000 perm   2 sec   (5607 perm/sec)   p_kst 1.721000e-01   p_cons 7.950000e-01   p_joint 2.829000e-01

Outputting figure to mutsig2_images.part000000000041/COG1.4_2999_10000_0.1721_0.795_0.2829.png
                gene_name: COG1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 54 percent done.
COG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.960612e-01	ci left: 7.782754e-03	ci right 1.171078e-02	k: 96	n:10000
Cons ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
KS ci ratio: 1.247453e-02	ci left: 9.022685e-01	ci right 9.136926e-01	k: 9081	n:10000
COG2   10000 perm   2 sec   (6215 perm/sec)   p_kst 9.081000e-01   p_cons 4.000000e-04   p_joint 9.600000e-03

Joint ci ratio: 1.120129e-01	ci left: 5.445922e-02	ci right 6.097011e-02	k: 1153	n:20000
Cons ci ratio: 1.131239e+00	ci left: 2.745890e-04	ci right 9.838883e-04	k: 11	n:20000
KS ci ratio: 8.713299e-03	ci left: 9.060509e-01	ci right 9.140294e-01	k: 18202	n:20000
COG2   20000 perm   4 sec   (5530 perm/sec)   p_kst 9.101000e-01   p_cons 5.500000e-04   p_joint 5.765000e-02

Joint ci ratio: 9.516112e-02	ci left: 5.098028e-02	ci right 5.610662e-02	k: 1605	n:30000
Cons ci ratio: 8.354264e-01	ci left: 4.333616e-04	ci right 1.069826e-03	k: 21	n:30000
KS ci ratio: 7.135671e-03	ci left: 9.062987e-01	ci right 9.128218e-01	k: 27288	n:30000
COG2   30000 perm   6 sec   (5254 perm/sec)   p_kst 9.096000e-01   p_cons 7.000000e-04   p_joint 5.350000e-02

Joint ci ratio: 2.605941e-01	ci left: 4.892283e-03	ci right 6.380868e-03	k: 224	n:40000
Cons ci ratio: 1.087022e+00	ci left: 1.550237e-04	ci right 5.239809e-04	k: 12	n:40000
KS ci ratio: 6.298973e-03	ci left: 9.035035e-01	ci right 9.092373e-01	k: 36256	n:40000
COG2   40000 perm   8 sec   (5090 perm/sec)   p_kst 9.064000e-01   p_cons 3.000000e-04   p_joint 5.600000e-03

Joint ci ratio: 2.853546e-01	ci left: 3.223947e-03	ci right 4.314914e-03	k: 187	n:50000
Cons ci ratio: 9.505685e-01	ci left: 1.829184e-04	ci right 5.196081e-04	k: 16	n:50000
KS ci ratio: 5.625245e-03	ci left: 9.040765e-01	ci right 9.091962e-01	k: 45333	n:50000
COG2   50000 perm   10 sec   (4960 perm/sec)   p_kst 9.066600e-01   p_cons 3.200000e-04   p_joint 3.740000e-03

Joint ci ratio: 3.002216e-01	ci left: 2.408480e-03	ci right 3.274056e-03	k: 169	n:60000
Cons ci ratio: 8.991598e-01	ci left: 1.778084e-04	ci right 4.740881e-04	k: 18	n:60000
KS ci ratio: 5.160608e-03	ci left: 9.034516e-01	ci right 9.081424e-01	k: 54349	n:60000
COG2   60000 perm   12 sec   (4849 perm/sec)   p_kst 9.058167e-01   p_cons 3.000000e-04   p_joint 2.816667e-03

Joint ci ratio: 2.733815e-01	ci left: 2.528541e-03	ci right 3.342101e-03	k: 204	n:70000
Cons ci ratio: 8.356095e-01	ci left: 1.857140e-04	ci right 4.585455e-04	k: 21	n:70000
KS ci ratio: 4.780624e-03	ci left: 9.035255e-01	ci right 9.078694e-01	k: 63400	n:70000
COG2   70000 perm   15 sec   (4748 perm/sec)   p_kst 9.057143e-01   p_cons 3.000000e-04   p_joint 2.914286e-03

Joint ci ratio: 2.521272e-01	ci left: 2.632897e-03	ci right 3.403844e-03	k: 240	n:80000
Cons ci ratio: 8.172539e-01	ci left: 1.723488e-04	ci right 4.163239e-04	k: 22	n:80000
KS ci ratio: 4.465992e-03	ci left: 9.038937e-01	ci right 9.079518e-01	k: 72475	n:80000
COG2   80000 perm   17 sec   (4656 perm/sec)   p_kst 9.059375e-01   p_cons 2.750000e-04   p_joint 3.000000e-03

Joint ci ratio: 2.748181e-01	ci left: 1.945864e-03	ci right 2.575794e-03	k: 202	n:90000
Cons ci ratio: 8.000555e-01	ci left: 1.620070e-04	ci right 3.834343e-04	k: 23	n:90000
KS ci ratio: 4.207641e-03	ci left: 9.041308e-01	ci right 9.079541e-01	k: 81545	n:90000
COG2   90000 perm   20 sec   (4567 perm/sec)   p_kst 9.060556e-01   p_cons 2.555556e-04   p_joint 2.244444e-03

Joint ci ratio: 2.977727e-01	ci left: 1.472727e-03	ci right 1.996853e-03	k: 172	n:100000
Cons ci ratio: 7.838981e-01	ci left: 1.537784e-04	ci right 3.570801e-04	k: 24	n:100000
KS ci ratio: 3.996054e-03	ci left: 9.040433e-01	ci right 9.076731e-01	k: 90587	n:100000
COG2   100000 perm   22 sec   (4488 perm/sec)   p_kst 9.058700e-01   p_cons 2.400000e-04   p_joint 1.720000e-03

Joint ci ratio: 2.622352e-01	ci left: 1.761633e-03	ci right 2.301527e-03	k: 222	n:110000
Cons ci ratio: 7.839073e-01	ci left: 1.397981e-04	ci right 3.246200e-04	k: 24	n:110000
KS ci ratio: 3.835349e-03	ci left: 9.029862e-01	ci right 9.064651e-01	k: 99521	n:110000
COG2   110000 perm   25 sec   (4411 perm/sec)   p_kst 9.047364e-01   p_cons 2.181818e-04   p_joint 2.018182e-03

Joint ci ratio: 2.086292e-01	ci left: 2.627349e-03	ci right 3.247059e-03	k: 351	n:120000
Cons ci ratio: 7.155984e-01	ci left: 1.618537e-04	ci right 3.470554e-04	k: 29	n:120000
KS ci ratio: 3.665374e-03	ci left: 9.033774e-01	ci right 9.067030e-01	k: 108606	n:120000
COG2   120000 perm   28 sec   (4342 perm/sec)   p_kst 9.050500e-01   p_cons 2.416667e-04   p_joint 2.925000e-03

Joint ci ratio: 2.066030e-01	ci left: 2.476272e-03	ci right 3.053955e-03	k: 358	n:130000
Cons ci ratio: 7.039661e-01	ci left: 1.557043e-04	ci right 3.294212e-04	k: 30	n:130000
KS ci ratio: 3.522752e-03	ci left: 9.033855e-01	ci right 9.065811e-01	k: 117649	n:130000
COG2   130000 perm   30 sec   (4270 perm/sec)   p_kst 9.049923e-01   p_cons 2.307692e-04   p_joint 2.753846e-03

Joint ci ratio: 1.982195e-01	ci left: 2.509609e-03	ci right 3.068443e-03	k: 389	n:140000
Cons ci ratio: 6.823015e-01	ci left: 1.563478e-04	ci right 3.226595e-04	k: 32	n:140000
KS ci ratio: 3.399524e-03	ci left: 9.031931e-01	ci right 9.062758e-01	k: 126664	n:140000
COG2   140000 perm   34 sec   (4177 perm/sec)   p_kst 9.047429e-01   p_cons 2.285714e-04   p_joint 2.778571e-03

Joint ci ratio: 2.104966e-01	ci left: 2.063914e-03	ci right 2.555640e-03	k: 345	n:150000
Cons ci ratio: 6.625214e-01	ci left: 1.569782e-04	ci right 3.167297e-04	k: 34	n:150000
KS ci ratio: 3.279982e-03	ci left: 9.034714e-01	ci right 9.064462e-01	k: 135745	n:150000
COG2   150000 perm   36 sec   (4114 perm/sec)   p_kst 9.049667e-01   p_cons 2.266667e-04   p_joint 2.300000e-03

Joint ci ratio: 2.013841e-01	ci left: 2.124616e-03	ci right 2.606200e-03	k: 377	n:160000
Cons ci ratio: 6.197270e-01	ci left: 1.733356e-04	ci right 3.331994e-04	k: 39	n:160000
KS ci ratio: 3.177747e-03	ci left: 9.034144e-01	ci right 9.062959e-01	k: 144778	n:160000
COG2   160000 perm   40 sec   (4048 perm/sec)   p_kst 9.048625e-01   p_cons 2.437500e-04   p_joint 2.356250e-03

Joint ci ratio: 2.192712e-01	ci left: 1.670782e-03	ci right 2.087675e-03	k: 318	n:170000
Cons ci ratio: 5.977170e-01	ci left: 1.780639e-04	ci right 3.339372e-04	k: 42	n:170000
KS ci ratio: 3.086404e-03	ci left: 9.032588e-01	ci right 9.060568e-01	k: 153793	n:170000
COG2   170000 perm   43 sec   (3967 perm/sec)   p_kst 9.046647e-01   p_cons 2.470588e-04   p_joint 1.870588e-03

Joint ci ratio: 2.111496e-01	ci left: 1.709370e-03	ci right 2.118050e-03	k: 343	n:180000
Cons ci ratio: 5.717145e-01	ci left: 1.871047e-04	ci right 3.408608e-04	k: 46	n:180000
KS ci ratio: 3.001630e-03	ci left: 9.031721e-01	ci right 9.058926e-01	k: 162817	n:180000
COG2   180000 perm   46 sec   (3907 perm/sec)   p_kst 9.045389e-01   p_cons 2.555556e-04   p_joint 1.905556e-03

Joint ci ratio: 2.075643e-01	ci left: 1.679247e-03	ci right 2.073042e-03	k: 355	n:190000
Cons ci ratio: 5.657303e-01	ci left: 1.817625e-04	ci right 3.289341e-04	k: 47	n:190000
KS ci ratio: 2.920001e-03	ci left: 9.033021e-01	ci right 9.059487e-01	k: 171880	n:190000
COG2   190000 perm   49 sec   (3853 perm/sec)   p_kst 9.046316e-01   p_cons 2.473684e-04   p_joint 1.868421e-03

Joint ci ratio: 2.353662e-01	ci left: 1.222073e-03	ci right 1.552650e-03	k: 276	n:200000
Cons ci ratio: 5.333711e-01	ci left: 1.985093e-04	ci right 3.466124e-04	k: 53	n:200000
KS ci ratio: 2.851199e-03	ci left: 9.030225e-01	ci right 9.056058e-01	k: 180864	n:200000
COG2   200000 perm   53 sec   (3786 perm/sec)   p_kst 9.043200e-01   p_cons 2.650000e-04   p_joint 1.380000e-03

Joint ci ratio: 2.280703e-01	ci left: 1.244620e-03	ci right 1.569393e-03	k: 294	n:210000
Cons ci ratio: 5.285022e-01	ci left: 1.931793e-04	ci right 3.355025e-04	k: 54	n:210000
KS ci ratio: 2.784794e-03	ci left: 9.029093e-01	ci right 9.054319e-01	k: 189877	n:210000
COG2   210000 perm   56 sec   (3739 perm/sec)   p_kst 9.041762e-01   p_cons 2.571429e-04   p_joint 1.400000e-03

Joint ci ratio: 2.127406e-01	ci left: 1.377029e-03	ci right 1.709054e-03	k: 338	n:220000
Cons ci ratio: 5.191482e-01	ci left: 1.922865e-04	ci right 3.305359e-04	k: 56	n:220000
KS ci ratio: 2.722105e-03	ci left: 9.028528e-01	ci right 9.053183e-01	k: 198900	n:220000
COG2   220000 perm   60 sec   (3691 perm/sec)   p_kst 9.040909e-01   p_cons 2.545455e-04   p_joint 1.536364e-03

Joint ci ratio: 2.254220e-01	ci left: 1.165093e-03	ci right 1.465092e-03	k: 301	n:230000
Cons ci ratio: 5.018369e-01	ci left: 1.990767e-04	ci right 3.357783e-04	k: 60	n:230000
KS ci ratio: 2.664732e-03	ci left: 9.027188e-01	ci right 9.051318e-01	k: 207904	n:230000
COG2   230000 perm   63 sec   (3646 perm/sec)   p_kst 9.039304e-01   p_cons 2.608696e-04   p_joint 1.308696e-03

Joint ci ratio: 2.210732e-01	ci left: 1.163752e-03	ci right 1.456838e-03	k: 313	n:240000
Cons ci ratio: 5.018397e-01	ci left: 1.907816e-04	ci right 3.217880e-04	k: 60	n:240000
KS ci ratio: 2.606891e-03	ci left: 9.028605e-01	ci right 9.052214e-01	k: 216971	n:240000
COG2   240000 perm   67 sec   (3600 perm/sec)   p_kst 9.040458e-01   p_cons 2.500000e-04   p_joint 1.304167e-03

Joint ci ratio: 1.951113e-01	ci left: 1.454742e-03	ci right 1.772991e-03	k: 402	n:250000
Cons ci ratio: 4.938104e-01	ci left: 1.901453e-04	ci right 3.179137e-04	k: 62	n:250000
KS ci ratio: 2.556248e-03	ci left: 9.027460e-01	ci right 9.050606e-01	k: 225977	n:250000
COG2   250000 perm   70 sec   (3556 perm/sec)   p_kst 9.039080e-01   p_cons 2.480000e-04   p_joint 1.608000e-03

Joint ci ratio: 1.927370e-01	ci left: 1.435383e-03	ci right 1.745128e-03	k: 412	n:260000
Cons ci ratio: 4.861544e-01	ci left: 1.895735e-04	ci right 3.143223e-04	k: 64	n:260000
KS ci ratio: 2.507055e-03	ci left: 9.027375e-01	ci right 9.050073e-01	k: 235008	n:260000
COG2   260000 perm   74 sec   (3514 perm/sec)   p_kst 9.038769e-01   p_cons 2.461538e-04   p_joint 1.584615e-03

Joint ci ratio: 1.869389e-01	ci left: 1.473944e-03	ci right 1.781357e-03	k: 438	n:270000
Cons ci ratio: 4.651564e-01	ci left: 2.021107e-04	ci right 3.275473e-04	k: 70	n:270000
KS ci ratio: 2.463374e-03	ci left: 9.025327e-01	ci right 9.047624e-01	k: 243986	n:270000
COG2   270000 perm   78 sec   (3472 perm/sec)   p_kst 9.036519e-01   p_cons 2.592593e-04   p_joint 1.622222e-03

Joint ci ratio: 1.946451e-01	ci left: 1.305661e-03	ci right 1.590532e-03	k: 404	n:280000
Cons ci ratio: 4.587407e-01	ci left: 2.012037e-04	ci right 3.238181e-04	k: 72	n:280000
KS ci ratio: 2.418415e-03	ci left: 9.025942e-01	ci right 9.047832e-01	k: 253034	n:280000
COG2   280000 perm   82 sec   (3428 perm/sec)   p_kst 9.036929e-01   p_cons 2.571429e-04   p_joint 1.442857e-03

Joint ci ratio: 1.911375e-01	ci left: 1.309865e-03	ci right 1.589905e-03	k: 419	n:290000
Cons ci ratio: 4.495951e-01	ci left: 2.034268e-04	ci right 3.241726e-04	k: 75	n:290000
KS ci ratio: 2.376960e-03	ci left: 9.025686e-01	ci right 9.047199e-01	k: 262058	n:290000
COG2   290000 perm   86 sec   (3367 perm/sec)   p_kst 9.036483e-01   p_cons 2.586207e-04   p_joint 1.444828e-03

Joint ci ratio: 1.891237e-01	ci left: 1.294774e-03	ci right 1.568336e-03	k: 428	n:300000
Cons ci ratio: 4.437942e-01	ci left: 2.025625e-04	ci right 3.207790e-04	k: 77	n:300000
KS ci ratio: 2.333762e-03	ci left: 9.028297e-01	ci right 9.049425e-01	k: 271167	n:300000
COG2   300000 perm   90 sec   (3327 perm/sec)   p_kst 9.038900e-01   p_cons 2.566667e-04   p_joint 1.426667e-03

Joint ci ratio: 1.941793e-01	ci left: 1.185437e-03	ci right 1.443385e-03	k: 406	n:310000
Cons ci ratio: 4.409775e-01	ci left: 1.988945e-04	ci right 3.140145e-04	k: 78	n:310000
KS ci ratio: 2.296361e-03	ci left: 9.028052e-01	ci right 9.048840e-01	k: 280193	n:310000
COG2   310000 perm   94 sec   (3291 perm/sec)   p_kst 9.038484e-01   p_cons 2.516129e-04   p_joint 1.309677e-03

Joint ci ratio: 1.904706e-01	ci left: 1.195986e-03	ci right 1.450683e-03	k: 422	n:320000
Cons ci ratio: 4.354997e-01	ci left: 1.982393e-04	ci right 3.111371e-04	k: 80	n:320000
KS ci ratio: 2.259930e-03	ci left: 9.028422e-01	ci right 9.048880e-01	k: 289238	n:320000
COG2   320000 perm   98 sec   (3253 perm/sec)   p_kst 9.038687e-01   p_cons 2.500000e-04   p_joint 1.318750e-03

Joint ci ratio: 1.795430e-01	ci left: 1.312925e-03	ci right 1.574743e-03	k: 475	n:330000
Cons ci ratio: 4.302211e-01	ci left: 1.976321e-04	ci right 3.084260e-04	k: 82	n:330000
KS ci ratio: 2.228670e-03	ci left: 9.026032e-01	ci right 9.046200e-01	k: 298193	n:330000
COG2   330000 perm   103 sec   (3215 perm/sec)   p_kst 9.036152e-01   p_cons 2.484848e-04   p_joint 1.439394e-03

Joint ci ratio: 1.828461e-01	ci left: 1.226572e-03	ci right 1.476169e-03	k: 458	n:340000
Cons ci ratio: 4.251299e-01	ci left: 1.970684e-04	ci right 3.058666e-04	k: 84	n:340000
KS ci ratio: 2.193691e-03	ci left: 9.027744e-01	ci right 9.047599e-01	k: 307282	n:340000
COG2   340000 perm   107 sec   (3180 perm/sec)   p_kst 9.037706e-01   p_cons 2.470588e-04   p_joint 1.347059e-03

Joint ci ratio: 1.803107e-01	ci left: 1.226982e-03	ci right 1.472822e-03	k: 471	n:350000
Cons ci ratio: 4.178203e-01	ci left: 1.991002e-04	ci right 3.066030e-04	k: 87	n:350000
KS ci ratio: 2.161262e-03	ci left: 9.028585e-01	ci right 9.048148e-01	k: 316344	n:350000
COG2   350000 perm   111 sec   (3145 perm/sec)   p_kst 9.038400e-01   p_cons 2.485714e-04   p_joint 1.345714e-03

Joint ci ratio: 1.824554e-01	ci left: 1.163727e-03	ci right 1.399973e-03	k: 460	n:360000
Cons ci ratio: 4.086355e-01	ci left: 2.035256e-04	ci right 3.103462e-04	k: 91	n:360000
KS ci ratio: 2.131489e-03	ci left: 9.028349e-01	ci right 9.047641e-01	k: 325369	n:360000
COG2   360000 perm   116 sec   (3112 perm/sec)   p_kst 9.038028e-01   p_cons 2.527778e-04   p_joint 1.277778e-03

Joint ci ratio: 1.719479e-01	ci left: 1.282092e-03	ci right 1.525824e-03	k: 518	n:370000
Cons ci ratio: 4.021313e-01	ci left: 2.053063e-04	ci right 3.108890e-04	k: 94	n:370000
KS ci ratio: 2.100756e-03	ci left: 9.029920e-01	ci right 9.048936e-01	k: 334460	n:370000
COG2   370000 perm   120 sec   (3078 perm/sec)   p_kst 9.039459e-01   p_cons 2.540541e-04   p_joint 1.400000e-03

Joint ci ratio: 1.691985e-01	ci left: 1.291180e-03	ci right 1.532315e-03	k: 535	n:380000
Cons ci ratio: 3.959282e-01	ci left: 2.070059e-04	ci right 3.113907e-04	k: 97	n:380000
KS ci ratio: 2.072975e-03	ci left: 9.030008e-01	ci right 9.048772e-01	k: 343498	n:380000
COG2   380000 perm   125 sec   (3046 perm/sec)   p_kst 9.039421e-01   p_cons 2.552632e-04   p_joint 1.407895e-03

Joint ci ratio: 1.670312e-01	ci left: 1.292460e-03	ci right 1.530431e-03	k: 549	n:390000
Cons ci ratio: 3.880866e-01	ci left: 2.109437e-04	ci right 3.146686e-04	k: 101	n:390000
KS ci ratio: 2.045362e-03	ci left: 9.030866e-01	ci right 9.049382e-01	k: 352566	n:390000
COG2   390000 perm   130 sec   (3011 perm/sec)   p_kst 9.040154e-01   p_cons 2.589744e-04   p_joint 1.407692e-03

Joint ci ratio: 1.658308e-01	ci left: 1.279315e-03	ci right 1.513004e-03	k: 557	n:400000
Cons ci ratio: 3.843372e-01	ci left: 2.101846e-04	ci right 3.122851e-04	k: 103	n:400000
KS ci ratio: 2.020859e-03	ci left: 9.029925e-01	ci right 9.048216e-01	k: 361564	n:400000
COG2   400000 perm   134 sec   (2981 perm/sec)   p_kst 9.039100e-01   p_cons 2.575000e-04   p_joint 1.392500e-03

Joint ci ratio: 1.716290e-01	ci left: 1.161672e-03	ci right 1.382059e-03	k: 520	n:410000
Cons ci ratio: 3.806944e-01	ci left: 2.094671e-04	ci right 3.100134e-04	k: 105	n:410000
KS ci ratio: 1.996653e-03	ci left: 9.029521e-01	ci right 9.047592e-01	k: 370582	n:410000
COG2   410000 perm   139 sec   (2950 perm/sec)   p_kst 9.038585e-01   p_cons 2.560976e-04   p_joint 1.268293e-03

Joint ci ratio: 1.684252e-01	ci left: 1.179606e-03	ci right 1.398795e-03	k: 540	n:420000
Cons ci ratio: 3.754187e-01	ci left: 2.109439e-04	ci right 3.104506e-04	k: 108	n:420000
KS ci ratio: 1.972026e-03	ci left: 9.030262e-01	ci right 9.048111e-01	k: 379647	n:420000
COG2   420000 perm   144 sec   (2920 perm/sec)   p_kst 9.039214e-01   p_cons 2.571429e-04   p_joint 1.285714e-03

Joint ci ratio: 1.671945e-01	ci left: 1.169997e-03	ci right 1.385651e-03	k: 548	n:430000
Cons ci ratio: 3.737091e-01	ci left: 2.081448e-04	ci right 3.057744e-04	k: 109	n:430000
KS ci ratio: 1.949879e-03	ci left: 9.029545e-01	ci right 9.047191e-01	k: 388651	n:430000
COG2   430000 perm   149 sec   (2890 perm/sec)   p_kst 9.038395e-01   p_cons 2.534884e-04   p_joint 1.274419e-03

Joint ci ratio: 1.656928e-01	ci left: 1.165186e-03	ci right 1.377832e-03	k: 558	n:440000
Cons ci ratio: 3.720226e-01	ci left: 2.054739e-04	ci right 3.013099e-04	k: 110	n:440000
KS ci ratio: 1.927427e-03	ci left: 9.029797e-01	ci right 9.047241e-01	k: 397696	n:440000
COG2   440000 perm   154 sec   (2862 perm/sec)   p_kst 9.038545e-01   p_cons 2.500000e-04   p_joint 1.268182e-03

Joint ci ratio: 1.632286e-01	ci left: 1.175516e-03	ci right 1.386545e-03	k: 575	n:450000
Cons ci ratio: 3.670947e-01	ci left: 2.069554e-04	ci right 3.018971e-04	k: 113	n:450000
KS ci ratio: 1.907926e-03	ci left: 9.028031e-01	ci right 9.045294e-01	k: 406651	n:450000
COG2   450000 perm   159 sec   (2831 perm/sec)   p_kst 9.036689e-01   p_cons 2.511111e-04   p_joint 1.277778e-03

Joint ci ratio: 1.612801e-01	ci left: 1.179161e-03	ci right 1.388072e-03	k: 589	n:460000
Cons ci ratio: 3.608186e-01	ci left: 2.103570e-04	ci right 3.048215e-04	k: 117	n:460000
KS ci ratio: 1.887349e-03	ci left: 9.027871e-01	ci right 9.044947e-01	k: 415676	n:460000
COG2   460000 perm   164 sec   (2798 perm/sec)   p_kst 9.036435e-01   p_cons 2.543478e-04   p_joint 1.280435e-03

Joint ci ratio: 1.601985e-01	ci left: 1.170409e-03	ci right 1.376244e-03	k: 597	n:470000
Cons ci ratio: 3.608196e-01	ci left: 2.058812e-04	ci right 2.983361e-04	k: 117	n:470000
KS ci ratio: 1.867583e-03	ci left: 9.027569e-01	ci right 9.044466e-01	k: 424694	n:470000
COG2   470000 perm   170 sec   (2771 perm/sec)   p_kst 9.036043e-01   p_cons 2.489362e-04   p_joint 1.270213e-03

Joint ci ratio: 1.586151e-01	ci left: 1.170028e-03	ci right 1.373569e-03	k: 609	n:480000
Cons ci ratio: 3.534088e-01	ci left: 2.110744e-04	ci right 3.034679e-04	k: 122	n:480000
KS ci ratio: 1.848005e-03	ci left: 9.027679e-01	ci right 9.044398e-01	k: 433731	n:480000
COG2   480000 perm   175 sec   (2743 perm/sec)   p_kst 9.036063e-01   p_cons 2.541667e-04   p_joint 1.268750e-03

Joint ci ratio: 1.513391e-01	ci left: 1.263857e-03	ci right 1.472722e-03	k: 669	n:490000
Cons ci ratio: 3.505704e-01	ci left: 2.104875e-04	ci right 3.017157e-04	k: 124	n:490000
KS ci ratio: 1.827187e-03	ci left: 9.029546e-01	ci right 9.046080e-01	k: 442854	n:490000
COG2   490000 perm   180 sec   (2716 perm/sec)   p_kst 9.037837e-01   p_cons 2.530612e-04   p_joint 1.365306e-03

Joint ci ratio: 1.497822e-01	ci left: 1.265525e-03	ci right 1.472322e-03	k: 683	n:500000
Cons ci ratio: 3.491770e-01	ci left: 2.081020e-04	ci right 2.978566e-04	k: 125	n:500000
KS ci ratio: 1.808881e-03	ci left: 9.029573e-01	ci right 9.045941e-01	k: 451889	n:500000
COG2   500000 perm   186 sec   (2691 perm/sec)   p_kst 9.037780e-01   p_cons 2.500000e-04   p_joint 1.366000e-03

Joint ci ratio: 1.459865e-01	ci left: 1.308690e-03	ci right 1.516648e-03	k: 719	n:510000
Cons ci ratio: 3.478001e-01	ci left: 2.058106e-04	ci right 2.941481e-04	k: 126	n:510000
KS ci ratio: 1.790813e-03	ci left: 9.029894e-01	ci right 9.046099e-01	k: 460939	n:510000
COG2   510000 perm   191 sec   (2665 perm/sec)   p_kst 9.038020e-01   p_cons 2.470588e-04   p_joint 1.409804e-03

Joint ci ratio: 1.449837e-01	ci left: 1.302053e-03	ci right 1.507413e-03	k: 729	n:520000
Cons ci ratio: 3.450936e-01	ci left: 2.053642e-04	ci right 2.926709e-04	k: 128	n:520000
KS ci ratio: 1.773510e-03	ci left: 9.029973e-01	ci right 9.046021e-01	k: 469977	n:520000
COG2   520000 perm   197 sec   (2639 perm/sec)   p_kst 9.038019e-01   p_cons 2.461538e-04   p_joint 1.401923e-03

Joint ci ratio: 1.432281e-01	ci left: 1.310224e-03	ci right 1.514156e-03	k: 747	n:530000
Cons ci ratio: 3.398641e-01	ci left: 2.083876e-04	ci right 2.953425e-04	k: 132	n:530000
KS ci ratio: 1.757099e-03	ci left: 9.029651e-01	ci right 9.045550e-01	k: 478994	n:530000
COG2   530000 perm   203 sec   (2611 perm/sec)   p_kst 9.037623e-01   p_cons 2.490566e-04   p_joint 1.409434e-03

Joint ci ratio: 1.421868e-01	ci left: 1.305604e-03	ci right 1.507214e-03	k: 758	n:540000
Cons ci ratio: 3.360946e-01	ci left: 2.096127e-04	ci right 2.958985e-04	k: 135	n:540000
KS ci ratio: 1.740209e-03	ci left: 9.030272e-01	ci right 9.046018e-01	k: 488061	n:540000
COG2   540000 perm   209 sec   (2587 perm/sec)   p_kst 9.038167e-01   p_cons 2.500000e-04   p_joint 1.403704e-03

Joint ci ratio: 1.407112e-01	ci left: 1.309927e-03	ci right 1.509930e-03	k: 774	n:550000
Cons ci ratio: 3.348662e-01	ci left: 2.074666e-04	ci right 2.924893e-04	k: 136	n:550000
KS ci ratio: 1.723219e-03	ci left: 9.031454e-01	ci right 9.047049e-01	k: 497160	n:550000
COG2   550000 perm   215 sec   (2564 perm/sec)   p_kst 9.039273e-01   p_cons 2.472727e-04   p_joint 1.407273e-03

Joint ci ratio: 1.397235e-01	ci left: 1.305489e-03	ci right 1.503298e-03	k: 785	n:560000
Cons ci ratio: 3.324485e-01	ci left: 2.070341e-04	ci right 2.911359e-04	k: 138	n:560000
KS ci ratio: 1.709032e-03	ci left: 9.030229e-01	ci right 9.045693e-01	k: 506127	n:560000
COG2   560000 perm   220 sec   (2541 perm/sec)   p_kst 9.037982e-01   p_cons 2.464286e-04   p_joint 1.401786e-03

Joint ci ratio: 1.382362e-01	ci left: 1.311373e-03	ci right 1.507785e-03	k: 802	n:570000
Cons ci ratio: 3.312595e-01	ci left: 2.050101e-04	ci right 2.879283e-04	k: 139	n:570000
KS ci ratio: 1.694487e-03	ci left: 9.029770e-01	ci right 9.045101e-01	k: 515135	n:570000
COG2   570000 perm   227 sec   (2516 perm/sec)   p_kst 9.037456e-01   p_cons 2.438596e-04   p_joint 1.407018e-03

Joint ci ratio: 1.371308e-01	ci left: 1.310405e-03	ci right 1.504975e-03	k: 815	n:580000
Cons ci ratio: 3.300831e-01	ci left: 2.030564e-04	ci right 2.848309e-04	k: 140	n:580000
KS ci ratio: 1.679840e-03	ci left: 9.029812e-01	ci right 9.045010e-01	k: 524171	n:580000
COG2   580000 perm   232 sec   (2495 perm/sec)   p_kst 9.037431e-01   p_cons 2.413793e-04   p_joint 1.405172e-03

Joint ci ratio: 1.371324e-01	ci left: 1.288194e-03	ci right 1.479468e-03	k: 815	n:590000
Cons ci ratio: 3.289192e-01	ci left: 2.011695e-04	ci right 2.818379e-04	k: 141	n:590000
KS ci ratio: 1.665274e-03	ci left: 9.030159e-01	ci right 9.045225e-01	k: 533225	n:590000
COG2   590000 perm   239 sec   (2472 perm/sec)   p_kst 9.037712e-01   p_cons 2.389831e-04   p_joint 1.381356e-03

Joint ci ratio: 1.363829e-01	ci left: 1.281211e-03	ci right 1.470323e-03	k: 824	n:600000
Cons ci ratio: 3.243818e-01	ci left: 2.039368e-04	ci right 2.843519e-04	k: 145	n:600000
KS ci ratio: 1.652077e-03	ci left: 9.029441e-01	ci right 9.044387e-01	k: 542216	n:600000
COG2   600000 perm   245 sec   (2450 perm/sec)   p_kst 9.036933e-01   p_cons 2.416667e-04   p_joint 1.373333e-03

Joint ci ratio: 1.352402e-01	ci left: 1.282378e-03	ci right 1.469950e-03	k: 838	n:610000
Cons ci ratio: 3.200270e-01	ci left: 2.066207e-04	ci right 2.867763e-04	k: 149	n:610000
KS ci ratio: 1.638911e-03	ci left: 9.029043e-01	ci right 9.043869e-01	k: 551225	n:610000
COG2   610000 perm   251 sec   (2429 perm/sec)   p_kst 9.036475e-01   p_cons 2.442623e-04   p_joint 1.373770e-03

Joint ci ratio: 1.339686e-01	ci left: 1.286632e-03	ci right 1.472916e-03	k: 854	n:620000
Cons ci ratio: 3.168739e-01	ci left: 2.077401e-04	ci right 2.873750e-04	k: 152	n:620000
KS ci ratio: 1.625436e-03	ci left: 9.029323e-01	ci right 9.044027e-01	k: 560275	n:620000
COG2   620000 perm   258 sec   (2406 perm/sec)   p_kst 9.036694e-01   p_cons 2.451613e-04   p_joint 1.377419e-03

Joint ci ratio: 1.328850e-01	ci left: 1.287690e-03	ci right 1.472499e-03	k: 868	n:630000
Cons ci ratio: 3.118191e-01	ci left: 2.117532e-04	ci right 2.913739e-04	k: 157	n:630000
KS ci ratio: 1.612612e-03	ci left: 9.029243e-01	ci right 9.043831e-01	k: 569303	n:630000
COG2   630000 perm   264 sec   (2385 perm/sec)   p_kst 9.036556e-01   p_cons 2.492063e-04   p_joint 1.377778e-03

Joint ci ratio: 1.316037e-01	ci left: 1.293254e-03	ci right 1.476932e-03	k: 885	n:640000
Cons ci ratio: 3.051320e-01	ci left: 2.185358e-04	ci right 2.986024e-04	k: 164	n:640000
KS ci ratio: 1.599928e-03	ci left: 9.029339e-01	ci right 9.043812e-01	k: 578342	n:640000
COG2   640000 perm   271 sec   (2362 perm/sec)   p_kst 9.036594e-01   p_cons 2.562500e-04   p_joint 1.382812e-03

Joint ci ratio: 1.305035e-01	ci left: 1.295678e-03	ci right 1.478043e-03	k: 900	n:650000
Cons ci ratio: 3.032995e-01	ci left: 2.180158e-04	ci right 2.973196e-04	k: 166	n:650000
KS ci ratio: 1.587119e-03	ci left: 9.029895e-01	ci right 9.044253e-01	k: 587411	n:650000
COG2   650000 perm   277 sec   (2343 perm/sec)   p_kst 9.037092e-01   p_cons 2.553846e-04   p_joint 1.384615e-03

Joint ci ratio: 1.297144e-01	ci left: 1.292171e-03	ci right 1.472858e-03	k: 911	n:660000
Cons ci ratio: 3.006113e-01	ci left: 2.189136e-04	ci right 2.977035e-04	k: 169	n:660000
KS ci ratio: 1.574680e-03	ci left: 9.030359e-01	ci right 9.044605e-01	k: 596475	n:660000
COG2   660000 perm   284 sec   (2323 perm/sec)   p_kst 9.037500e-01   p_cons 2.560606e-04   p_joint 1.380303e-03

Joint ci ratio: 1.218710e-01	ci left: 1.447811e-03	ci right 1.637138e-03	k: 1032	n:670000
Cons ci ratio: 2.937772e-01	ci left: 2.266967e-04	ci right 3.060877e-04	k: 177	n:670000
KS ci ratio: 1.561993e-03	ci left: 9.031409e-01	ci right 9.045541e-01	k: 605579	n:670000
COG2   670000 perm   291 sec   (2304 perm/sec)   p_kst 9.038493e-01   p_cons 2.641791e-04   p_joint 1.540299e-03

Joint ci ratio: 1.218134e-01	ci left: 1.427944e-03	ci right 1.614579e-03	k: 1033	n:680000
Cons ci ratio: 2.929558e-01	ci left: 2.247253e-04	ci right 3.031650e-04	k: 178	n:680000
KS ci ratio: 1.550366e-03	ci left: 9.031572e-01	ci right 9.045599e-01	k: 614625	n:680000
COG2   680000 perm   297 sec   (2286 perm/sec)   p_kst 9.038603e-01   p_cons 2.617647e-04   p_joint 1.519118e-03

Joint ci ratio: 1.209971e-01	ci left: 1.426923e-03	ci right 1.612085e-03	k: 1047	n:690000
Cons ci ratio: 2.921412e-01	ci left: 2.228113e-04	ci right 3.003267e-04	k: 179	n:690000
KS ci ratio: 1.539432e-03	ci left: 9.031236e-01	ci right 9.045164e-01	k: 623637	n:690000
COG2   690000 perm   304 sec   (2269 perm/sec)   p_kst 9.038217e-01   p_cons 2.594203e-04   p_joint 1.517391e-03

Joint ci ratio: 1.255820e-01	ci left: 1.302694e-03	ci right 1.478617e-03	k: 972	n:700000
Cons ci ratio: 2.905317e-01	ci left: 2.222766e-04	ci right 2.991017e-04	k: 181	n:700000
KS ci ratio: 1.528035e-03	ci left: 9.031699e-01	ci right 9.045525e-01	k: 632704	n:700000
COG2   700000 perm   311 sec   (2250 perm/sec)   p_kst 9.038629e-01   p_cons 2.585714e-04   p_joint 1.388571e-03

Joint ci ratio: 1.248148e-01	ci left: 1.300718e-03	ci right 1.475222e-03	k: 984	n:710000
Cons ci ratio: 2.881664e-01	ci left: 2.230647e-04	ci right 2.994201e-04	k: 184	n:710000
KS ci ratio: 1.517133e-03	ci left: 9.031867e-01	ci right 9.045593e-01	k: 641751	n:710000
COG2   710000 perm   318 sec   (2233 perm/sec)   p_kst 9.038746e-01   p_cons 2.591549e-04   p_joint 1.385915e-03

Joint ci ratio: 1.240616e-01	ci left: 1.298800e-03	ci right 1.471918e-03	k: 996	n:720000
Cons ci ratio: 2.881669e-01	ci left: 2.199665e-04	ci right 2.952616e-04	k: 184	n:720000
KS ci ratio: 1.506425e-03	ci left: 9.032072e-01	ci right 9.045702e-01	k: 650801	n:720000
COG2   720000 perm   325 sec   (2216 perm/sec)   p_kst 9.038903e-01   p_cons 2.555556e-04   p_joint 1.383333e-03

Joint ci ratio: 1.227747e-01	ci left: 1.308888e-03	ci right 1.481409e-03	k: 1017	n:730000
Cons ci ratio: 2.843495e-01	ci left: 2.233110e-04	ci right 2.985565e-04	k: 189	n:730000
KS ci ratio: 1.495917e-03	ci left: 9.032299e-01	ci right 9.045834e-01	k: 659853	n:730000
COG2   730000 perm   332 sec   (2197 perm/sec)   p_kst 9.039082e-01   p_cons 2.589041e-04   p_joint 1.393151e-03

Joint ci ratio: 1.219983e-01	ci left: 1.308230e-03	ci right 1.479495e-03	k: 1030	n:740000
Cons ci ratio: 2.836044e-01	ci left: 2.215484e-04	ci right 2.959693e-04	k: 190	n:740000
KS ci ratio: 1.485915e-03	ci left: 9.032181e-01	ci right 9.045625e-01	k: 668880	n:740000
COG2   740000 perm   339 sec   (2181 perm/sec)   p_kst 9.038919e-01   p_cons 2.567568e-04   p_joint 1.391892e-03

Joint ci ratio: 1.210623e-01	ci left: 1.311472e-03	ci right 1.481750e-03	k: 1046	n:750000
Cons ci ratio: 2.821313e-01	ci left: 2.210719e-04	ci right 2.948784e-04	k: 192	n:750000
KS ci ratio: 1.476303e-03	ci left: 9.031839e-01	ci right 9.045196e-01	k: 677890	n:750000
COG2   750000 perm   346 sec   (2165 perm/sec)   p_kst 9.038533e-01   p_cons 2.560000e-04   p_joint 1.394667e-03

Joint ci ratio: 1.199782e-01	ci left: 1.318462e-03	ci right 1.488006e-03	k: 1065	n:760000
Cons ci ratio: 2.792521e-01	ci left: 2.230558e-04	ci right 2.966311e-04	k: 196	n:760000
KS ci ratio: 1.466431e-03	ci left: 9.032035e-01	ci right 9.045303e-01	k: 686940	n:760000
COG2   760000 perm   354 sec   (2148 perm/sec)   p_kst 9.038684e-01   p_cons 2.578947e-04   p_joint 1.401316e-03

Joint ci ratio: 1.195868e-01	ci left: 1.310157e-03	ci right 1.478045e-03	k: 1072	n:770000
Cons ci ratio: 2.785463e-01	ci left: 2.213668e-04	ci right 2.941680e-04	k: 197	n:770000
KS ci ratio: 1.456972e-03	ci left: 9.031965e-01	ci right 9.045147e-01	k: 695970	n:770000
COG2   770000 perm   361 sec   (2132 perm/sec)   p_kst 9.038571e-01   p_cons 2.558442e-04   p_joint 1.392208e-03

Joint ci ratio: 1.189787e-01	ci left: 1.307042e-03	ci right 1.473619e-03	k: 1083	n:780000
Cons ci ratio: 2.778458e-01	ci left: 2.197214e-04	ci right 2.917680e-04	k: 198	n:780000
KS ci ratio: 1.447587e-03	ci left: 9.032026e-01	ci right 9.045123e-01	k: 705010	n:780000
COG2   780000 perm   369 sec   (2115 perm/sec)   p_kst 9.038590e-01   p_cons 2.538462e-04   p_joint 1.388462e-03

Joint ci ratio: 1.182717e-01	ci left: 1.306465e-03	ci right 1.471910e-03	k: 1096	n:790000
Cons ci ratio: 2.778463e-01	ci left: 2.169401e-04	ci right 2.880748e-04	k: 198	n:790000
KS ci ratio: 1.438842e-03	ci left: 9.031527e-01	ci right 9.044544e-01	k: 714006	n:790000
COG2   790000 perm   377 sec   (2097 perm/sec)   p_kst 9.038051e-01   p_cons 2.506329e-04   p_joint 1.387342e-03

Joint ci ratio: 1.173128e-01	ci left: 1.311971e-03	ci right 1.476673e-03	k: 1114	n:800000
Cons ci ratio: 2.750950e-01	ci left: 2.188818e-04	ci right 2.898195e-04	k: 202	n:800000
KS ci ratio: 1.430047e-03	ci left: 9.031292e-01	ci right 9.044229e-01	k: 723022	n:800000
COG2   800000 perm   384 sec   (2083 perm/sec)   p_kst 9.037775e-01   p_cons 2.525000e-04   p_joint 1.392500e-03

Joint ci ratio: 1.169468e-01	ci left: 1.304162e-03	ci right 1.467338e-03	k: 1121	n:810000
Cons ci ratio: 2.737499e-01	ci left: 2.184788e-04	ci right 2.888801e-04	k: 204	n:810000
KS ci ratio: 1.421614e-03	ci left: 9.030815e-01	ci right 9.043675e-01	k: 732018	n:810000
COG2   810000 perm   392 sec   (2068 perm/sec)   p_kst 9.037259e-01   p_cons 2.518519e-04   p_joint 1.383951e-03

Joint ci ratio: 1.160706e-01	ci left: 1.308386e-03	ci right 1.470779e-03	k: 1138	n:820000
Cons ci ratio: 2.717685e-01	ci left: 2.192228e-04	ci right 2.892653e-04	k: 207	n:820000
KS ci ratio: 1.412842e-03	ci left: 9.030949e-01	ci right 9.043730e-01	k: 741063	n:820000
COG2   820000 perm   399 sec   (2054 perm/sec)   p_kst 9.037354e-01   p_cons 2.524390e-04   p_joint 1.387805e-03

Joint ci ratio: 1.154641e-01	ci left: 1.306661e-03	ci right 1.467935e-03	k: 1150	n:830000
Cons ci ratio: 2.717689e-01	ci left: 2.165815e-04	ci right 2.857802e-04	k: 207	n:830000
KS ci ratio: 1.404775e-03	ci left: 9.030404e-01	ci right 9.043110e-01	k: 750052	n:830000
COG2   830000 perm   407 sec   (2039 perm/sec)   p_kst 9.036771e-01   p_cons 2.493976e-04   p_joint 1.385542e-03

Joint ci ratio: 1.148175e-01	ci left: 1.306136e-03	ci right 1.466382e-03	k: 1163	n:840000
Cons ci ratio: 2.698299e-01	ci left: 2.173321e-04	ci right 2.861914e-04	k: 210	n:840000
KS ci ratio: 1.396376e-03	ci left: 9.030457e-01	ci right 9.043087e-01	k: 759090	n:840000
COG2   840000 perm   415 sec   (2025 perm/sec)   p_kst 9.036786e-01   p_cons 2.500000e-04   p_joint 1.384524e-03

Joint ci ratio: 1.139880e-01	ci left: 1.310198e-03	ci right 1.469702e-03	k: 1180	n:850000
Cons ci ratio: 2.685602e-01	ci left: 2.169694e-04	ci right 2.853358e-04	k: 212	n:850000
KS ci ratio: 1.388286e-03	ci left: 9.030308e-01	ci right 9.042865e-01	k: 768111	n:850000
COG2   850000 perm   423 sec   (2011 perm/sec)   p_kst 9.036600e-01   p_cons 2.494118e-04   p_joint 1.388235e-03

Joint ci ratio: 1.130816e-01	ci left: 1.316429e-03	ci right 1.475332e-03	k: 1199	n:860000
Cons ci ratio: 2.660732e-01	ci left: 2.187860e-04	ci right 2.869800e-04	k: 216	n:860000
KS ci ratio: 1.380233e-03	ci left: 9.030291e-01	ci right 9.042775e-01	k: 777143	n:860000
COG2   860000 perm   430 sec   (1998 perm/sec)   p_kst 9.036547e-01   p_cons 2.511628e-04   p_joint 1.394186e-03

Joint ci ratio: 1.141350e-01	ci left: 1.276727e-03	ci right 1.432371e-03	k: 1177	n:870000
Cons ci ratio: 2.648556e-01	ci left: 2.184171e-04	ci right 2.861329e-04	k: 218	n:870000
KS ci ratio: 1.372337e-03	ci left: 9.030252e-01	ci right 9.042664e-01	k: 786173	n:870000
COG2   870000 perm   438 sec   (1984 perm/sec)   p_kst 9.036471e-01   p_cons 2.505747e-04   p_joint 1.352874e-03

Joint ci ratio: 1.134628e-01	ci left: 1.277675e-03	ci right 1.432455e-03	k: 1191	n:880000
Cons ci ratio: 2.636545e-01	ci left: 2.180573e-04	ci right 2.853043e-04	k: 220	n:880000
KS ci ratio: 1.364486e-03	ci left: 9.030327e-01	ci right 9.042669e-01	k: 795213	n:880000
COG2   880000 perm   446 sec   (1971 perm/sec)   p_kst 9.036511e-01   p_cons 2.500000e-04   p_joint 1.353409e-03

Joint ci ratio: 1.127554e-01	ci left: 1.279696e-03	ci right 1.433691e-03	k: 1206	n:890000
Cons ci ratio: 2.624696e-01	ci left: 2.177062e-04	ci right 2.844937e-04	k: 222	n:890000
KS ci ratio: 1.356900e-03	ci left: 9.030233e-01	ci right 9.042505e-01	k: 804238	n:890000
COG2   890000 perm   454 sec   (1959 perm/sec)   p_kst 9.036382e-01   p_cons 2.494382e-04   p_joint 1.355056e-03

Joint ci ratio: 1.119695e-01	ci left: 1.283836e-03	ci right 1.437180e-03	k: 1223	n:900000
Cons ci ratio: 2.624699e-01	ci left: 2.152872e-04	ci right 2.813327e-04	k: 222	n:900000
KS ci ratio: 1.349171e-03	ci left: 9.030486e-01	ci right 9.042688e-01	k: 813294	n:900000
COG2   900000 perm   463 sec   (1945 perm/sec)   p_kst 9.036600e-01   p_cons 2.466667e-04   p_joint 1.358889e-03

Joint ci ratio: 1.094046e-01	ci left: 1.331701e-03	ci right 1.486885e-03	k: 1281	n:910000
Cons ci ratio: 2.607220e-01	ci left: 2.160020e-04	ci right 2.817535e-04	k: 225	n:910000
KS ci ratio: 1.341633e-03	ci left: 9.030656e-01	ci right 9.042791e-01	k: 822343	n:910000
COG2   910000 perm   471 sec   (1932 perm/sec)   p_kst 9.036736e-01   p_cons 2.472527e-04   p_joint 1.407692e-03

Joint ci ratio: 1.104456e-01	ci left: 1.291855e-03	ci right 1.443921e-03	k: 1257	n:920000
Cons ci ratio: 2.601473e-01	ci left: 2.146701e-04	ci right 2.798488e-04	k: 226	n:920000
KS ci ratio: 1.334669e-03	ci left: 9.030234e-01	ci right 9.042305e-01	k: 831338	n:920000
COG2   920000 perm   479 sec   (1919 perm/sec)   p_kst 9.036283e-01   p_cons 2.456522e-04   p_joint 1.366304e-03

Joint ci ratio: 1.096206e-01	ci left: 1.297832e-03	ci right 1.449387e-03	k: 1276	n:930000
Cons ci ratio: 2.584450e-01	ci left: 2.153780e-04	ci right 2.802746e-04	k: 229	n:930000
KS ci ratio: 1.327443e-03	ci left: 9.030307e-01	ci right 9.042313e-01	k: 840378	n:930000
COG2   930000 perm   488 sec   (1906 perm/sec)   p_kst 9.036323e-01   p_cons 2.462366e-04   p_joint 1.372043e-03

Joint ci ratio: 1.089823e-01	ci left: 1.299547e-03	ci right 1.450361e-03	k: 1291	n:940000
Cons ci ratio: 2.578852e-01	ci left: 2.140817e-04	ci right 2.784255e-04	k: 230	n:940000
KS ci ratio: 1.320149e-03	ci left: 9.030624e-01	ci right 9.042564e-01	k: 849441	n:940000
COG2   940000 perm   496 sec   (1894 perm/sec)   p_kst 9.036606e-01   p_cons 2.446809e-04   p_joint 1.373404e-03

Joint ci ratio: 1.083550e-01	ci left: 1.301228e-03	ci right 1.451313e-03	k: 1306	n:950000
Cons ci ratio: 2.573290e-01	ci left: 2.128129e-04	ci right 2.766152e-04	k: 231	n:950000
KS ci ratio: 1.312988e-03	ci left: 9.030913e-01	ci right 9.042789e-01	k: 858502	n:950000
COG2   950000 perm   505 sec   (1882 perm/sec)   p_kst 9.036863e-01   p_cons 2.431579e-04   p_joint 1.374737e-03

Joint ci ratio: 1.076977e-01	ci left: 1.303890e-03	ci right 1.453312e-03	k: 1322	n:960000
Cons ci ratio: 2.562270e-01	ci left: 2.125453e-04	ci right 2.759509e-04	k: 233	n:960000
KS ci ratio: 1.305779e-03	ci left: 9.031416e-01	ci right 9.043227e-01	k: 867584	n:960000
COG2   960000 perm   513 sec   (1870 perm/sec)   p_kst 9.037333e-01   p_cons 2.427083e-04   p_joint 1.377083e-03

Joint ci ratio: 1.072127e-01	ci left: 1.302486e-03	ci right 1.451032e-03	k: 1334	n:970000
Cons ci ratio: 2.535324e-01	ci left: 2.151796e-04	ci right 2.785892e-04	k: 238	n:970000
KS ci ratio: 1.298733e-03	ci left: 9.031846e-01	ci right 9.043594e-01	k: 876660	n:970000
COG2   970000 perm   522 sec   (1857 perm/sec)   p_kst 9.037732e-01   p_cons 2.453608e-04   p_joint 1.375258e-03

Joint ci ratio: 1.064182e-01	ci left: 1.309059e-03	ci right 1.457179e-03	k: 1354	n:980000
Cons ci ratio: 2.519559e-01	ci left: 2.158512e-04	ci right 2.790012e-04	k: 241	n:980000
KS ci ratio: 1.292148e-03	ci left: 9.031797e-01	ci right 9.043485e-01	k: 885690	n:980000
COG2   980000 perm   531 sec   (1846 perm/sec)   p_kst 9.037653e-01   p_cons 2.459184e-04   p_joint 1.381633e-03

Joint ci ratio: 1.059501e-01	ci left: 1.307635e-03	ci right 1.454903e-03	k: 1366	n:990000
Cons ci ratio: 2.498989e-01	ci left: 2.174573e-04	ci right 2.804769e-04	k: 245	n:990000
KS ci ratio: 1.285827e-03	ci left: 9.031527e-01	ci right 9.043157e-01	k: 894698	n:990000
COG2   990000 perm   540 sec   (1835 perm/sec)   p_kst 9.037354e-01   p_cons 2.474747e-04   p_joint 1.379798e-03

Joint ci ratio: 1.055649e-01	ci left: 1.304294e-03	ci right 1.450619e-03	k: 1376	n:1000000
Cons ci ratio: 2.498992e-01	ci left: 2.152827e-04	ci right 2.776722e-04	k: 245	n:1000000
KS ci ratio: 1.279561e-03	ci left: 9.031312e-01	ci right 9.042885e-01	k: 903711	n:1000000
COG2   1000000 perm   548 sec   (1824 perm/sec)   p_kst 9.037110e-01   p_cons 2.450000e-04   p_joint 1.376000e-03

Joint ci ratio: 1.051839e-01	ci left: 1.301020e-03	ci right 1.446418e-03	k: 1386	n:1010000
Cons ci ratio: 2.473973e-01	ci left: 2.177932e-04	ci right 2.801813e-04	k: 250	n:1010000
KS ci ratio: 1.273603e-03	ci left: 9.030803e-01	ci right 9.042322e-01	k: 912694	n:1010000
COG2   1010000 perm   557 sec   (1813 perm/sec)   p_kst 9.036574e-01   p_cons 2.475248e-04   p_joint 1.372277e-03

Joint ci ratio: 1.046196e-01	ci left: 1.302585e-03	ci right 1.447329e-03	k: 1401	n:1020000
Cons ci ratio: 2.469062e-01	ci left: 2.165777e-04	ci right 2.784754e-04	k: 251	n:1020000
KS ci ratio: 1.267741e-03	ci left: 9.030285e-01	ci right 9.041750e-01	k: 921675	n:1020000
COG2   1020000 perm   566 sec   (1802 perm/sec)   p_kst 9.036029e-01   p_cons 2.460784e-04   p_joint 1.373529e-03

Joint ci ratio: 1.041380e-01	ci left: 1.302231e-03	ci right 1.446228e-03	k: 1414	n:1030000
Cons ci ratio: 2.464179e-01	ci left: 2.153858e-04	ci right 2.768026e-04	k: 252	n:1030000
KS ci ratio: 1.261522e-03	ci left: 9.030381e-01	ci right 9.041790e-01	k: 930718	n:1030000
COG2   1030000 perm   575 sec   (1790 perm/sec)   p_kst 9.036097e-01   p_cons 2.446602e-04   p_joint 1.372816e-03

Joint ci ratio: 1.035903e-01	ci left: 1.303758e-03	ci right 1.447119e-03	k: 1429	n:1040000
Cons ci ratio: 2.454497e-01	ci left: 2.151194e-04	ci right 2.761824e-04	k: 254	n:1040000
KS ci ratio: 1.255748e-03	ci left: 9.029984e-01	ci right 9.041340e-01	k: 939710	n:1040000
COG2   1040000 perm   585 sec   (1777 perm/sec)   p_kst 9.035673e-01   p_cons 2.442308e-04   p_joint 1.374038e-03

Joint ci ratio: 1.028376e-01	ci left: 1.310825e-03	ci right 1.453853e-03	k: 1450	n:1050000
Cons ci ratio: 2.435468e-01	ci left: 2.166468e-04	ci right 2.775945e-04	k: 258	n:1050000
KS ci ratio: 1.249848e-03	ci left: 9.029881e-01	ci right 9.041183e-01	k: 948732	n:1050000
COG2   1050000 perm   595 sec   (1766 perm/sec)   p_kst 9.035543e-01   p_cons 2.457143e-04   p_joint 1.380952e-03

Joint ci ratio: 1.023101e-01	ci left: 1.312247e-03	ci right 1.454651e-03	k: 1465	n:1060000
Cons ci ratio: 2.426119e-01	ci left: 2.163748e-04	ci right 2.769772e-04	k: 260	n:1060000
KS ci ratio: 1.243592e-03	ci left: 9.030394e-01	ci right 9.041640e-01	k: 957819	n:1060000
COG2   1060000 perm   604 sec   (1756 perm/sec)   p_kst 9.036028e-01   p_cons 2.452830e-04   p_joint 1.382075e-03

Joint ci ratio: 1.015164e-01	ci left: 1.320930e-03	ci right 1.463099e-03	k: 1488	n:1070000
Cons ci ratio: 2.421486e-01	ci left: 2.152304e-04	ci right 2.753798e-04	k: 261	n:1070000
KS ci ratio: 1.237621e-03	ci left: 9.030626e-01	ci right 9.041819e-01	k: 966877	n:1070000
COG2   1070000 perm   613 sec   (1746 perm/sec)   p_kst 9.036234e-01   p_cons 2.439252e-04   p_joint 1.390654e-03

Joint ci ratio: 1.010088e-01	ci left: 1.322237e-03	ci right 1.463792e-03	k: 1503	n:1080000
Cons ci ratio: 2.416880e-01	ci left: 2.141073e-04	ci right 2.738120e-04	k: 262	n:1080000
KS ci ratio: 1.232043e-03	ci left: 9.030418e-01	ci right 9.041560e-01	k: 975888	n:1080000
COG2   1080000 perm   623 sec   (1735 perm/sec)   p_kst 9.036000e-01   p_cons 2.425926e-04   p_joint 1.391667e-03

Joint ci ratio: 1.003436e-01	ci left: 1.327993e-03	ci right 1.469173e-03	k: 1523	n:1090000
Cons ci ratio: 2.385339e-01	ci left: 2.181788e-04	ci right 2.781075e-04	k: 269	n:1090000
KS ci ratio: 1.226746e-03	ci left: 9.029920e-01	ci right 9.041013e-01	k: 984867	n:1090000
COG2   1090000 perm   632 sec   (1724 perm/sec)   p_kst 9.035477e-01   p_cons 2.467890e-04   p_joint 1.397248e-03

Joint ci ratio: 9.978842e-02	ci left: 1.330988e-03	ci right 1.471658e-03	k: 1540	n:1100000
Cons ci ratio: 2.372196e-01	ci left: 2.187601e-04	ci right 2.784688e-04	k: 272	n:1100000
KS ci ratio: 1.221148e-03	ci left: 9.029959e-01	ci right 9.041002e-01	k: 993904	n:1100000
COG2   1100000 perm   642 sec   (1714 perm/sec)   p_kst 9.035491e-01   p_cons 2.472727e-04   p_joint 1.400000e-03

Joint ci ratio: 9.921049e-02	ci left: 1.334810e-03	ci right 1.475020e-03	k: 1558	n:1110000
Cons ci ratio: 2.367865e-01	ci left: 2.176367e-04	ci right 2.769144e-04	k: 273	n:1110000
KS ci ratio: 1.215719e-03	ci left: 9.029862e-01	ci right 9.040855e-01	k: 1002926	n:1110000
COG2   1110000 perm   651 sec   (1704 perm/sec)   p_kst 9.035369e-01   p_cons 2.459459e-04   p_joint 1.403604e-03

Joint ci ratio: 9.854867e-02	ci left: 1.341179e-03	ci right 1.481063e-03	k: 1579	n:1120000
Cons ci ratio: 2.346549e-01	ci left: 2.198942e-04	ci right 2.791693e-04	k: 278	n:1120000
KS ci ratio: 1.210437e-03	ci left: 9.029660e-01	ci right 9.040605e-01	k: 1011936	n:1120000
COG2   1120000 perm   661 sec   (1694 perm/sec)   p_kst 9.035143e-01   p_cons 2.482143e-04   p_joint 1.409821e-03

Joint ci ratio: 9.826941e-02	ci left: 1.337078e-03	ci right 1.476117e-03	k: 1588	n:1130000
Cons ci ratio: 2.338184e-01	ci left: 2.196142e-04	ci right 2.785724e-04	k: 280	n:1130000
KS ci ratio: 1.205382e-03	ci left: 9.029230e-01	ci right 9.040129e-01	k: 1020920	n:1130000
COG2   1130000 perm   671 sec   (1684 perm/sec)   p_kst 9.034690e-01   p_cons 2.477876e-04   p_joint 1.405310e-03

Joint ci ratio: 9.959691e-02	ci left: 1.289417e-03	ci right 1.425417e-03	k: 1546	n:1140000
Cons ci ratio: 2.334036e-01	ci left: 2.185136e-04	ci right 2.770572e-04	k: 281	n:1140000
KS ci ratio: 1.200166e-03	ci left: 9.029134e-01	ci right 9.039986e-01	k: 1029941	n:1140000
COG2   1140000 perm   682 sec   (1672 perm/sec)   p_kst 9.034570e-01   p_cons 2.464912e-04   p_joint 1.356140e-03

Joint ci ratio: 9.924480e-02	ci left: 1.287532e-03	ci right 1.422825e-03	k: 1557	n:1150000
Cons ci ratio: 2.325804e-01	ci left: 2.182511e-04	ci right 2.764885e-04	k: 283	n:1150000
KS ci ratio: 1.195065e-03	ci left: 9.028970e-01	ci right 9.039775e-01	k: 1038954	n:1150000
COG2   1150000 perm   692 sec   (1662 perm/sec)   p_kst 9.034383e-01   p_cons 2.460870e-04   p_joint 1.353913e-03

Joint ci ratio: 9.895958e-02	ci left: 1.283999e-03	ci right 1.418511e-03	k: 1566	n:1160000
Cons ci ratio: 2.317658e-01	ci left: 2.179935e-04	ci right 2.759292e-04	k: 285	n:1160000
KS ci ratio: 1.189923e-03	ci left: 9.028964e-01	ci right 9.039723e-01	k: 1047985	n:1160000
COG2   1160000 perm   702 sec   (1652 perm/sec)   p_kst 9.034353e-01   p_cons 2.456897e-04   p_joint 1.350000e-03

Joint ci ratio: 9.861417e-02	ci left: 1.282194e-03	ci right 1.416020e-03	k: 1577	n:1170000
Cons ci ratio: 2.317660e-01	ci left: 2.161303e-04	ci right 2.735709e-04	k: 285	n:1170000
KS ci ratio: 1.184875e-03	ci left: 9.028916e-01	ci right 9.039628e-01	k: 1057011	n:1170000
COG2   1170000 perm   712 sec   (1642 perm/sec)   p_kst 9.034282e-01   p_cons 2.435897e-04   p_joint 1.347863e-03

Joint ci ratio: 9.814872e-02	ci left: 1.283727e-03	ci right 1.417045e-03	k: 1592	n:1180000
Cons ci ratio: 2.313620e-01	ci left: 2.150970e-04	ci right 2.721491e-04	k: 286	n:1180000
KS ci ratio: 1.179805e-03	ci left: 9.028996e-01	ci right 9.039663e-01	k: 1066052	n:1180000
COG2   1180000 perm   723 sec   (1632 perm/sec)   p_kst 9.034339e-01   p_cons 2.423729e-04   p_joint 1.349153e-03

Joint ci ratio: 9.744737e-02	ci left: 1.291795e-03	ci right 1.424937e-03	k: 1615	n:1190000
Cons ci ratio: 2.301622e-01	ci left: 2.156647e-04	ci right 2.725286e-04	k: 289	n:1190000
KS ci ratio: 1.174817e-03	ci left: 9.029049e-01	ci right 9.039671e-01	k: 1075090	n:1190000
COG2   1190000 perm   733 sec   (1623 perm/sec)   p_kst 9.034370e-01   p_cons 2.428571e-04   p_joint 1.357143e-03

Joint ci ratio: 9.696841e-02	ci left: 1.294039e-03	ci right 1.426720e-03	k: 1631	n:1200000
Cons ci ratio: 2.297665e-01	ci left: 2.146528e-04	ci right 2.711388e-04	k: 290	n:1200000
KS ci ratio: 1.170126e-03	ci left: 9.028751e-01	ci right 9.039330e-01	k: 1084086	n:1200000
COG2   1200000 perm   744 sec   (1613 perm/sec)   p_kst 9.034050e-01   p_cons 2.416667e-04   p_joint 1.359167e-03

Joint ci ratio: 9.661393e-02	ci left: 1.293022e-03	ci right 1.425086e-03	k: 1643	n:1210000
Cons ci ratio: 2.289810e-01	ci left: 2.144368e-04	ci right 2.706457e-04	k: 292	n:1210000
KS ci ratio: 1.165264e-03	ci left: 9.028797e-01	ci right 9.039332e-01	k: 1093123	n:1210000
COG2   1210000 perm   754 sec   (1605 perm/sec)   p_kst 9.034074e-01   p_cons 2.413223e-04   p_joint 1.357851e-03

Joint ci ratio: 9.617611e-02	ci left: 1.294422e-03	ci right 1.425996e-03	k: 1658	n:1220000
Cons ci ratio: 2.282035e-01	ci left: 2.142246e-04	ci right 2.701603e-04	k: 294	n:1220000
KS ci ratio: 1.160229e-03	ci left: 9.029196e-01	ci right 9.039686e-01	k: 1102203	n:1220000
COG2   1220000 perm   764 sec   (1596 perm/sec)   p_kst 9.034451e-01   p_cons 2.409836e-04   p_joint 1.359016e-03

Joint ci ratio: 9.560133e-02	ci left: 1.299769e-03	ci right 1.431053e-03	k: 1678	n:1230000
Cons ci ratio: 2.259173e-01	ci left: 2.170835e-04	ci right 2.731189e-04	k: 300	n:1230000
KS ci ratio: 1.155618e-03	ci left: 9.029043e-01	ci right 9.039491e-01	k: 1111216	n:1230000
COG2   1230000 perm   775 sec   (1587 perm/sec)   p_kst 9.034276e-01   p_cons 2.439024e-04   p_joint 1.364228e-03

Joint ci ratio: 9.540292e-02	ci left: 1.294797e-03	ci right 1.425292e-03	k: 1685	n:1240000
Cons ci ratio: 2.259175e-01	ci left: 2.153328e-04	ci right 2.709163e-04	k: 300	n:1240000
KS ci ratio: 1.150711e-03	ci left: 9.029426e-01	ci right 9.039830e-01	k: 1120295	n:1240000
COG2   1240000 perm   786 sec   (1578 perm/sec)   p_kst 9.034637e-01   p_cons 2.419355e-04   p_joint 1.358871e-03

Joint ci ratio: 9.498129e-02	ci left: 1.296153e-03	ci right 1.426175e-03	k: 1700	n:1250000
Cons ci ratio: 2.251707e-01	ci left: 2.151198e-04	ci right 2.704393e-04	k: 302	n:1250000
KS ci ratio: 1.146002e-03	ci left: 9.029594e-01	ci right 9.039955e-01	k: 1129348	n:1250000
COG2   1250000 perm   796 sec   (1570 perm/sec)   p_kst 9.034784e-01   p_cons 2.416000e-04   p_joint 1.360000e-03

Joint ci ratio: 9.462043e-02	ci left: 1.295939e-03	ci right 1.425418e-03	k: 1713	n:1260000
Cons ci ratio: 2.240642e-01	ci left: 2.156595e-04	ci right 2.708076e-04	k: 305	n:1260000
KS ci ratio: 1.141128e-03	ci left: 9.030102e-01	ci right 9.040420e-01	k: 1138444	n:1260000
COG2   1260000 perm   807 sec   (1562 perm/sec)   p_kst 9.035270e-01   p_cons 2.420635e-04   p_joint 1.359524e-03

Joint ci ratio: 9.434574e-02	ci left: 1.293422e-03	ci right 1.422255e-03	k: 1723	n:1270000
Cons ci ratio: 2.236991e-01	ci left: 2.147046e-04	ci right 2.695068e-04	k: 306	n:1270000
KS ci ratio: 1.136946e-03	ci left: 9.029630e-01	ci right 9.039910e-01	k: 1147417	n:1270000
COG2   1270000 perm   818 sec   (1553 perm/sec)   p_kst 9.034780e-01   p_cons 2.409449e-04   p_joint 1.356693e-03

Joint ci ratio: 9.404628e-02	ci left: 1.291709e-03	ci right 1.419940e-03	k: 1734	n:1280000
Cons ci ratio: 2.222557e-01	ci left: 2.159777e-04	ci right 2.707005e-04	k: 310	n:1280000
KS ci ratio: 1.132637e-03	ci left: 9.029433e-01	ci right 9.039674e-01	k: 1156424	n:1280000
COG2   1280000 perm   828 sec   (1545 perm/sec)   p_kst 9.034562e-01   p_cons 2.421875e-04   p_joint 1.354687e-03

Joint ci ratio: 9.377655e-02	ci left: 1.289265e-03	ci right 1.416866e-03	k: 1744	n:1290000
Cons ci ratio: 2.222559e-01	ci left: 2.143035e-04	ci right 2.686020e-04	k: 310	n:1290000
KS ci ratio: 1.128286e-03	ci left: 9.029379e-01	ci right 9.039580e-01	k: 1165449	n:1290000
COG2   1290000 perm   839 sec   (1537 perm/sec)   p_kst 9.034488e-01   p_cons 2.403101e-04   p_joint 1.351938e-03

Joint ci ratio: 9.342920e-02	ci left: 1.289114e-03	ci right 1.416201e-03	k: 1757	n:1300000
Cons ci ratio: 2.215447e-01	ci left: 2.141079e-04	ci right 2.681597e-04	k: 312	n:1300000
KS ci ratio: 1.123995e-03	ci left: 9.029310e-01	ci right 9.039472e-01	k: 1174472	n:1300000
COG2   1300000 perm   851 sec   (1528 perm/sec)   p_kst 9.034400e-01   p_cons 2.400000e-04   p_joint 1.351538e-03

Joint ci ratio: 9.329692e-02	ci left: 1.283001e-03	ci right 1.409297e-03	k: 1762	n:1310000
Cons ci ratio: 2.215449e-01	ci left: 2.124735e-04	ci right 2.661127e-04	k: 312	n:1310000
KS ci ratio: 1.119748e-03	ci left: 9.029250e-01	ci right 9.039373e-01	k: 1183496	n:1310000
COG2   1310000 perm   862 sec   (1521 perm/sec)   p_kst 9.034321e-01   p_cons 2.381679e-04   p_joint 1.345038e-03

Joint ci ratio: 9.305985e-02	ci left: 1.279940e-03	ci right 1.405597e-03	k: 1771	n:1320000
Cons ci ratio: 2.201426e-01	ci left: 2.137265e-04	ci right 2.672943e-04	k: 316	n:1320000
KS ci ratio: 1.115476e-03	ci left: 9.029305e-01	ci right 9.039390e-01	k: 1192535	n:1320000
COG2   1320000 perm   873 sec   (1513 perm/sec)   p_kst 9.034356e-01   p_cons 2.393939e-04   p_joint 1.341667e-03

Joint ci ratio: 9.277243e-02	ci left: 1.278395e-03	ci right 1.403492e-03	k: 1782	n:1330000
Cons ci ratio: 2.197963e-01	ci left: 2.128300e-04	ci right 2.660779e-04	k: 317	n:1330000
KS ci ratio: 1.111395e-03	ci left: 9.029133e-01	ci right 9.039181e-01	k: 1201544	n:1330000
COG2   1330000 perm   884 sec   (1505 perm/sec)   p_kst 9.034165e-01   p_cons 2.383459e-04   p_joint 1.339850e-03

Joint ci ratio: 9.070768e-02	ci left: 1.328647e-03	ci right 1.455614e-03	k: 1864	n:1340000
Cons ci ratio: 2.194517e-01	ci left: 2.119469e-04	ci right 2.648795e-04	k: 318	n:1340000
KS ci ratio: 1.107436e-03	ci left: 9.028844e-01	ci right 9.038855e-01	k: 1210537	n:1340000
COG2   1340000 perm   896 sec   (1495 perm/sec)   p_kst 9.033858e-01   p_cons 2.373134e-04   p_joint 1.391045e-03

Joint ci ratio: 8.993876e-02	ci left: 1.341973e-03	ci right 1.469070e-03	k: 1896	n:1350000
Cons ci ratio: 2.180885e-01	ci left: 2.131776e-04	ci right 2.660424e-04	k: 322	n:1350000
KS ci ratio: 1.103471e-03	ci left: 9.028633e-01	ci right 9.038609e-01	k: 1219540	n:1350000
COG2   1350000 perm   908 sec   (1487 perm/sec)   p_kst 9.033630e-01   p_cons 2.385185e-04   p_joint 1.404444e-03

Joint ci ratio: 8.970277e-02	ci left: 1.339294e-03	ci right 1.465786e-03	k: 1906	n:1360000
Cons ci ratio: 2.180887e-01	ci left: 2.116101e-04	ci right 2.640863e-04	k: 322	n:1360000
KS ci ratio: 1.099622e-03	ci left: 9.028308e-01	ci right 9.038248e-01	k: 1228527	n:1360000
COG2   1360000 perm   919 sec   (1479 perm/sec)   p_kst 9.033287e-01   p_cons 2.367647e-04   p_joint 1.401471e-03

Joint ci ratio: 8.928227e-02	ci left: 1.342363e-03	ci right 1.468519e-03	k: 1924	n:1370000
Cons ci ratio: 2.167505e-01	ci left: 2.128262e-04	ci right 2.652371e-04	k: 326	n:1370000
KS ci ratio: 1.095873e-03	ci left: 9.027893e-01	ci right 9.037798e-01	k: 1237501	n:1370000
COG2   1370000 perm   930 sec   (1472 perm/sec)   p_kst 9.032854e-01   p_cons 2.379562e-04   p_joint 1.404380e-03

Joint ci ratio: 8.895937e-02	ci left: 1.342554e-03	ci right 1.468249e-03	k: 1938	n:1380000
Cons ci ratio: 2.154368e-01	ci left: 2.140257e-04	ci right 2.663702e-04	k: 330	n:1380000
KS ci ratio: 1.091858e-03	ci left: 9.027970e-01	ci right 9.037839e-01	k: 1246542	n:1380000
COG2   1380000 perm   942 sec   (1464 perm/sec)   p_kst 9.032913e-01   p_cons 2.391304e-04   p_joint 1.404348e-03

Joint ci ratio: 8.845870e-02	ci left: 1.348372e-03	ci right 1.473864e-03	k: 1960	n:1390000
Cons ci ratio: 2.151122e-01	ci left: 2.131666e-04	ci right 2.652121e-04	k: 331	n:1390000
KS ci ratio: 1.087870e-03	ci left: 9.028075e-01	ci right 9.037908e-01	k: 1255587	n:1390000
COG2   1390000 perm   954 sec   (1457 perm/sec)   p_kst 9.033000e-01   p_cons 2.381295e-04   p_joint 1.410072e-03

Joint ci ratio: 8.809996e-02	ci left: 1.349917e-03	ci right 1.475017e-03	k: 1976	n:1400000
Cons ci ratio: 2.144672e-01	ci left: 2.129957e-04	ci right 2.648230e-04	k: 333	n:1400000
KS ci ratio: 1.084234e-03	ci left: 9.027677e-01	ci right 9.037478e-01	k: 1264562	n:1400000
COG2   1400000 perm   966 sec   (1449 perm/sec)   p_kst 9.032586e-01   p_cons 2.378571e-04   p_joint 1.411429e-03

Joint ci ratio: 8.776761e-02	ci left: 1.350747e-03	ci right 1.475428e-03	k: 1991	n:1410000
Cons ci ratio: 2.128795e-01	ci left: 2.148415e-04	ci right 2.666804e-04	k: 338	n:1410000
KS ci ratio: 1.080508e-03	ci left: 9.027491e-01	ci right 9.037258e-01	k: 1273566	n:1410000
COG2   1410000 perm   978 sec   (1442 perm/sec)   p_kst 9.032383e-01   p_cons 2.397163e-04   p_joint 1.412057e-03

Joint ci ratio: 8.107338e-02	ci left: 1.577011e-03	ci right 1.710950e-03	k: 2333	n:1420000
Cons ci ratio: 2.125663e-01	ci left: 2.139952e-04	ci right 2.655440e-04	k: 339	n:1420000
KS ci ratio: 1.076764e-03	ci left: 9.027400e-01	ci right 9.037133e-01	k: 1282583	n:1420000
COG2   1420000 perm   990 sec   (1435 perm/sec)   p_kst 9.032275e-01   p_cons 2.387324e-04   p_joint 1.642958e-03

Joint ci ratio: 8.752680e-02	ci left: 1.339379e-03	ci right 1.462654e-03	k: 2002	n:1430000
Cons ci ratio: 2.116346e-01	ci left: 2.144852e-04	ci right 2.658962e-04	k: 342	n:1430000
KS ci ratio: 1.072972e-03	ci left: 9.027450e-01	ci right 9.037149e-01	k: 1291620	n:1430000
COG2   1430000 perm   1001 sec   (1428 perm/sec)   p_kst 9.032308e-01   p_cons 2.391608e-04   p_joint 1.400000e-03

Joint ci ratio: 8.728754e-02	ci left: 1.337550e-03	ci right 1.460303e-03	k: 2013	n:1440000
Cons ci ratio: 2.110203e-01	ci left: 2.143111e-04	ci right 2.655120e-04	k: 344	n:1440000
KS ci ratio: 1.069220e-03	ci left: 9.027500e-01	ci right 9.037164e-01	k: 1300657	n:1440000
COG2   1440000 perm   1013 sec   (1421 perm/sec)   p_kst 9.032340e-01   p_cons 2.388889e-04   p_joint 1.397917e-03

Joint ci ratio: 8.705023e-02	ci left: 1.335746e-03	ci right 1.457983e-03	k: 2024	n:1450000
Cons ci ratio: 2.101088e-01	ci left: 2.147930e-04	ci right 2.658588e-04	k: 347	n:1450000
KS ci ratio: 1.065717e-03	ci left: 9.027203e-01	ci right 9.036836e-01	k: 1309644	n:1450000
COG2   1450000 perm   1026 sec   (1414 perm/sec)   p_kst 9.032028e-01   p_cons 2.393103e-04   p_joint 1.395862e-03

Joint ci ratio: 8.739708e-02	ci left: 1.315877e-03	ci right 1.436800e-03	k: 2008	n:1460000
Cons ci ratio: 2.092089e-01	ci left: 2.152687e-04	ci right 2.662004e-04	k: 350	n:1460000
KS ci ratio: 1.062074e-03	ci left: 9.027199e-01	ci right 9.036799e-01	k: 1318673	n:1460000
COG2   1460000 perm   1038 sec   (1407 perm/sec)   p_kst 9.032007e-01   p_cons 2.397260e-04   p_joint 1.375342e-03

Joint ci ratio: 8.711570e-02	ci left: 1.315576e-03	ci right 1.436062e-03	k: 2021	n:1470000
Cons ci ratio: 2.089116e-01	ci left: 2.144489e-04	ci right 2.651053e-04	k: 351	n:1470000
KS ci ratio: 1.058624e-03	ci left: 9.026936e-01	ci right 9.036504e-01	k: 1327664	n:1470000
COG2   1470000 perm   1050 sec   (1400 perm/sec)   p_kst 9.031728e-01   p_cons 2.387755e-04   p_joint 1.374830e-03

Joint ci ratio: 8.685840e-02	ci left: 1.314618e-03	ci right 1.434644e-03	k: 2033	n:1480000
Cons ci ratio: 2.089118e-01	ci left: 2.129999e-04	ci right 2.633141e-04	k: 351	n:1480000
KS ci ratio: 1.055077e-03	ci left: 9.026893e-01	ci right 9.036429e-01	k: 1336687	n:1480000
COG2   1480000 perm   1063 sec   (1393 perm/sec)   p_kst 9.031669e-01   p_cons 2.371622e-04   p_joint 1.373649e-03

Joint ci ratio: 8.649758e-02	ci left: 1.316958e-03	ci right 1.436672e-03	k: 2050	n:1490000
Cons ci ratio: 2.080271e-01	ci left: 2.134787e-04	ci right 2.636653e-04	k: 354	n:1490000
KS ci ratio: 1.051509e-03	ci left: 9.026945e-01	ci right 9.036449e-01	k: 1345724	n:1490000
COG2   1490000 perm   1075 sec   (1386 perm/sec)   p_kst 9.031705e-01   p_cons 2.375839e-04   p_joint 1.375839e-03

Joint ci ratio: 8.597487e-02	ci left: 1.324485e-03	ci right 1.444120e-03	k: 2075	n:1500000
Cons ci ratio: 2.071536e-01	ci left: 2.139516e-04	ci right 2.640113e-04	k: 357	n:1500000
KS ci ratio: 1.047973e-03	ci left: 9.027003e-01	ci right 9.036475e-01	k: 1354762	n:1500000
COG2   1500000 perm   1088 sec   (1379 perm/sec)   p_kst 9.031747e-01   p_cons 2.380000e-04   p_joint 1.383333e-03

Joint ci ratio: 8.729038e-02	ci left: 1.275542e-03	ci right 1.392609e-03	k: 2013	n:1510000
Cons ci ratio: 2.071538e-01	ci left: 2.125347e-04	ci right 2.622629e-04	k: 357	n:1510000
KS ci ratio: 1.044488e-03	ci left: 9.027034e-01	ci right 9.036474e-01	k: 1363796	n:1510000
COG2   1510000 perm   1100 sec   (1373 perm/sec)   p_kst 9.031762e-01   p_cons 2.364238e-04   p_joint 1.333113e-03

Joint ci ratio: 8.694562e-02	ci left: 1.277448e-03	ci right 1.394202e-03	k: 2029	n:1520000
Cons ci ratio: 2.062912e-01	ci left: 2.130079e-04	ci right 2.626132e-04	k: 360	n:1520000
KS ci ratio: 1.040885e-03	ci left: 9.027321e-01	ci right 9.036729e-01	k: 1372869	n:1520000
COG2   1520000 perm   1112 sec   (1366 perm/sec)   p_kst 9.032033e-01   p_cons 2.368421e-04   p_joint 1.334868e-03

Joint ci ratio: 8.666856e-02	ci left: 1.277411e-03	ci right 1.393771e-03	k: 2042	n:1530000
Cons ci ratio: 2.060062e-01	ci left: 2.122356e-04	ci right 2.615841e-04	k: 361	n:1530000
KS ci ratio: 1.037478e-03	ci left: 9.027337e-01	ci right 9.036713e-01	k: 1381901	n:1530000
COG2   1530000 perm   1125 sec   (1360 perm/sec)   p_kst 9.032033e-01   p_cons 2.359477e-04   p_joint 1.334641e-03

Joint ci ratio: 8.626818e-02	ci left: 1.281187e-03	ci right 1.397325e-03	k: 2061	n:1540000
Cons ci ratio: 2.051578e-01	ci left: 2.127052e-04	ci right 2.619337e-04	k: 364	n:1540000
KS ci ratio: 1.034208e-03	ci left: 9.027176e-01	ci right 9.036523e-01	k: 1390906	n:1540000
COG2   1540000 perm   1138 sec   (1353 perm/sec)   p_kst 9.031857e-01   p_cons 2.363636e-04   p_joint 1.338312e-03

Joint ci ratio: 8.610147e-02	ci left: 1.277971e-03	ci right 1.393582e-03	k: 2069	n:1550000
Cons ci ratio: 2.048774e-01	ci left: 2.119449e-04	ci right 2.609220e-04	k: 365	n:1550000
KS ci ratio: 1.030805e-03	ci left: 9.027296e-01	ci right 9.036612e-01	k: 1399954	n:1550000
COG2   1550000 perm   1151 sec   (1347 perm/sec)   p_kst 9.031961e-01   p_cons 2.354839e-04   p_joint 1.334839e-03

Joint ci ratio: 8.593572e-02	ci left: 1.274797e-03	ci right 1.389888e-03	k: 2077	n:1560000
Cons ci ratio: 2.043200e-01	ci left: 2.118027e-04	ci right 2.605971e-04	k: 367	n:1560000
KS ci ratio: 1.027443e-03	ci left: 9.027401e-01	ci right 9.036687e-01	k: 1409000	n:1560000
COG2   1560000 perm   1164 sec   (1340 perm/sec)   p_kst 9.032051e-01   p_cons 2.352564e-04   p_joint 1.331410e-03

Joint ci ratio: 8.575034e-02	ci left: 1.272286e-03	ci right 1.386891e-03	k: 2086	n:1570000
Cons ci ratio: 2.037670e-01	ci left: 2.116624e-04	ci right 2.602761e-04	k: 369	n:1570000
KS ci ratio: 1.024203e-03	ci left: 9.027351e-01	ci right 9.036608e-01	k: 1418022	n:1570000
COG2   1570000 perm   1177 sec   (1334 perm/sec)   p_kst 9.031987e-01   p_cons 2.350318e-04   p_joint 1.328662e-03

Joint ci ratio: 8.554573e-02	ci left: 1.270427e-03	ci right 1.384578e-03	k: 2096	n:1580000
Cons ci ratio: 2.037672e-01	ci left: 2.103228e-04	ci right 2.586288e-04	k: 369	n:1580000
KS ci ratio: 1.021112e-03	ci left: 9.027100e-01	ci right 9.036328e-01	k: 1427012	n:1580000
COG2   1580000 perm   1190 sec   (1328 perm/sec)   p_kst 9.031722e-01   p_cons 2.335443e-04   p_joint 1.326582e-03

Joint ci ratio: 8.522116e-02	ci left: 1.272285e-03	ci right 1.386147e-03	k: 2112	n:1590000
Cons ci ratio: 2.018663e-01	ci left: 2.131790e-04	ci right 2.616280e-04	k: 376	n:1590000
KS ci ratio: 1.017906e-03	ci left: 9.027097e-01	ci right 9.036297e-01	k: 1436041	n:1590000
COG2   1590000 perm   1203 sec   (1322 perm/sec)   p_kst 9.031704e-01   p_cons 2.364780e-04   p_joint 1.328302e-03

Joint ci ratio: 8.504035e-02	ci left: 1.269839e-03	ci right 1.383229e-03	k: 2121	n:1600000
Cons ci ratio: 2.013330e-01	ci left: 2.130335e-04	ci right 2.613058e-04	k: 378	n:1600000
KS ci ratio: 1.014602e-03	ci left: 9.027314e-01	ci right 9.036484e-01	k: 1445105	n:1600000
COG2   1600000 perm   1216 sec   (1316 perm/sec)   p_kst 9.031906e-01   p_cons 2.362500e-04   p_joint 1.325625e-03

Joint ci ratio: 8.474133e-02	ci left: 1.271071e-03	ci right 1.384152e-03	k: 2136	n:1610000
Cons ci ratio: 2.013331e-01	ci left: 2.117103e-04	ci right 2.596828e-04	k: 378	n:1610000
KS ci ratio: 1.011403e-03	ci left: 9.027404e-01	ci right 9.036545e-01	k: 1454149	n:1610000
COG2   1610000 perm   1230 sec   (1309 perm/sec)   p_kst 9.031981e-01   p_cons 2.347826e-04   p_joint 1.326708e-03

Joint ci ratio: 8.454383e-02	ci left: 1.269267e-03	ci right 1.381911e-03	k: 2146	n:1620000
Cons ci ratio: 2.008040e-01	ci left: 2.115759e-04	ci right 2.593765e-04	k: 380	n:1620000
KS ci ratio: 1.008188e-03	ci left: 9.027573e-01	ci right 9.036685e-01	k: 1463206	n:1620000
COG2   1620000 perm   1243 sec   (1303 perm/sec)   p_kst 9.032136e-01   p_cons 2.345679e-04   p_joint 1.324691e-03

Joint ci ratio: 8.421100e-02	ci left: 1.271689e-03	ci right 1.384082e-03	k: 2163	n:1630000
Cons ci ratio: 1.997580e-01	ci left: 2.126088e-04	ci right 2.603621e-04	k: 384	n:1630000
KS ci ratio: 1.005147e-03	ci left: 9.027487e-01	ci right 9.036572e-01	k: 1472222	n:1630000
COG2   1630000 perm   1256 sec   (1297 perm/sec)   p_kst 9.032037e-01   p_cons 2.355828e-04   p_joint 1.326994e-03

Joint ci ratio: 8.393990e-02	ci left: 1.272292e-03	ci right 1.384359e-03	k: 2177	n:1640000
Cons ci ratio: 1.984733e-01	ci left: 2.142092e-04	ci right 2.619751e-04	k: 389	n:1640000
KS ci ratio: 1.002134e-03	ci left: 9.027403e-01	ci right 9.036460e-01	k: 1481238	n:1640000
COG2   1640000 perm   1270 sec   (1292 perm/sec)   p_kst 9.031939e-01   p_cons 2.371951e-04   p_joint 1.327439e-03

Joint ci ratio: 8.141521e-02	ci left: 1.345897e-03	ci right 1.460713e-03	k: 2314	n:1650000
Cons ci ratio: 1.972129e-01	ci left: 2.157912e-04	ci right 2.635675e-04	k: 394	n:1650000
KS ci ratio: 9.990544e-04	ci left: 9.027484e-01	ci right 9.036514e-01	k: 1490281	n:1650000
COG2   1650000 perm   1283 sec   (1286 perm/sec)   p_kst 9.032006e-01   p_cons 2.387879e-04   p_joint 1.402424e-03

Joint ci ratio: 8.118760e-02	ci left: 1.345462e-03	ci right 1.459904e-03	k: 2327	n:1660000
Cons ci ratio: 1.969639e-01	ci left: 2.150639e-04	ci right 2.626119e-04	k: 395	n:1660000
KS ci ratio: 9.959720e-04	ci left: 9.027619e-01	ci right 9.036620e-01	k: 1499333	n:1660000
COG2   1660000 perm   1297 sec   (1280 perm/sec)   p_kst 9.032127e-01   p_cons 2.379518e-04   p_joint 1.401807e-03

Joint ci ratio: 8.089271e-02	ci left: 1.347378e-03	ci right 1.461548e-03	k: 2344	n:1670000
Cons ci ratio: 1.959765e-01	ci left: 2.160535e-04	ci right 2.635522e-04	k: 399	n:1670000
KS ci ratio: 9.930914e-04	ci left: 9.027445e-01	ci right 9.036421e-01	k: 1508334	n:1670000
COG2   1670000 perm   1311 sec   (1274 perm/sec)   p_kst 9.031940e-01   p_cons 2.389222e-04   p_joint 1.403593e-03

Joint ci ratio: 8.049869e-02	ci left: 1.352773e-03	ci right 1.466814e-03	k: 2367	n:1680000
Cons ci ratio: 1.950038e-01	ci left: 2.170319e-04	ci right 2.644808e-04	k: 403	n:1680000
KS ci ratio: 9.901244e-04	ci left: 9.027471e-01	ci right 9.036420e-01	k: 1517368	n:1680000
COG2   1680000 perm   1324 sec   (1269 perm/sec)   p_kst 9.031952e-01   p_cons 2.398810e-04   p_joint 1.408929e-03

Joint ci ratio: 7.976037e-02	ci left: 1.370282e-03	ci right 1.484692e-03	k: 2411	n:1690000
Cons ci ratio: 1.945229e-01	ci left: 2.168734e-04	ci right 2.641569e-04	k: 405	n:1690000
KS ci ratio: 9.874177e-04	ci left: 9.027082e-01	ci right 9.036005e-01	k: 1526332	n:1690000
COG2   1690000 perm   1338 sec   (1263 perm/sec)   p_kst 9.031550e-01   p_cons 2.396450e-04   p_joint 1.426627e-03

Joint ci ratio: 7.946432e-02	ci left: 1.372599e-03	ci right 1.486757e-03	k: 2429	n:1700000
Cons ci ratio: 1.935716e-01	ci left: 2.178363e-04	ci right 2.650701e-04	k: 409	n:1700000
KS ci ratio: 9.846666e-04	ci left: 9.026814e-01	ci right 9.035713e-01	k: 1535316	n:1700000
COG2   1700000 perm   1352 sec   (1257 perm/sec)   p_kst 9.031271e-01   p_cons 2.405882e-04   p_joint 1.428824e-03

Joint ci ratio: 7.326416e-02	ci left: 1.610100e-03	ci right 1.733118e-03	k: 2857	n:1710000
Cons ci ratio: 1.928672e-01	ci left: 2.182320e-04	ci right 2.653592e-04	k: 412	n:1710000
KS ci ratio: 9.818498e-04	ci left: 9.026709e-01	ci right 9.035582e-01	k: 1544327	n:1710000
COG2   1710000 perm   1367 sec   (1251 perm/sec)   p_kst 9.031152e-01   p_cons 2.409357e-04   p_joint 1.670760e-03

Joint ci ratio: 7.883398e-02	ci left: 1.378865e-03	ci right 1.492592e-03	k: 2468	n:1720000
Cons ci ratio: 1.919399e-01	ci left: 2.191767e-04	ci right 2.662538e-04	k: 416	n:1720000
KS ci ratio: 9.790341e-04	ci left: 9.026645e-01	ci right 9.035492e-01	k: 1553345	n:1720000
COG2   1720000 perm   1381 sec   (1246 perm/sec)   p_kst 9.031076e-01   p_cons 2.418605e-04   p_joint 1.434884e-03

Joint ci ratio: 7.857974e-02	ci left: 1.379961e-03	ci right 1.493395e-03	k: 2484	n:1730000
Cons ci ratio: 1.912531e-01	ci left: 2.195608e-04	ci right 2.665320e-04	k: 419	n:1730000
KS ci ratio: 9.761749e-04	ci left: 9.026704e-01	ci right 9.035525e-01	k: 1562384	n:1730000
COG2   1730000 perm   1395 sec   (1240 perm/sec)   p_kst 9.031121e-01   p_cons 2.421965e-04   p_joint 1.435838e-03

Joint ci ratio: 7.829660e-02	ci left: 1.382172e-03	ci right 1.495360e-03	k: 2502	n:1740000
Cons ci ratio: 1.905737e-01	ci left: 2.199407e-04	ci right 2.668066e-04	k: 422	n:1740000
KS ci ratio: 9.734684e-04	ci left: 9.026532e-01	ci right 9.035329e-01	k: 1571383	n:1740000
COG2   1740000 perm   1409 sec   (1235 perm/sec)   p_kst 9.030937e-01   p_cons 2.425287e-04   p_joint 1.437931e-03

Joint ci ratio: 7.854874e-02	ci left: 1.365310e-03	ci right 1.477493e-03	k: 2486	n:1750000
Cons ci ratio: 1.899014e-01	ci left: 2.203165e-04	ci right 2.670778e-04	k: 425	n:1750000
KS ci ratio: 9.707082e-04	ci left: 9.026499e-01	ci right 9.035271e-01	k: 1580406	n:1750000
COG2   1750000 perm   1423 sec   (1229 perm/sec)   p_kst 9.030891e-01   p_cons 2.428571e-04   p_joint 1.420571e-03

Joint ci ratio: 7.832859e-02	ci left: 1.365351e-03	ci right 1.477209e-03	k: 2500	n:1760000
Cons ci ratio: 1.896790e-01	ci left: 2.196059e-04	ci right 2.661555e-04	k: 426	n:1760000
KS ci ratio: 9.680217e-04	ci left: 9.026375e-01	ci right 9.035123e-01	k: 1589413	n:1760000
COG2   1760000 perm   1438 sec   (1224 perm/sec)   p_kst 9.030756e-01   p_cons 2.420455e-04   p_joint 1.420455e-03

Joint ci ratio: 7.804815e-02	ci left: 1.367608e-03	ci right 1.479231e-03	k: 2518	n:1770000
Cons ci ratio: 1.894574e-01	ci left: 2.189033e-04	ci right 2.652436e-04	k: 427	n:1770000
KS ci ratio: 9.652763e-04	ci left: 9.026400e-01	ci right 9.035123e-01	k: 1598446	n:1770000
COG2   1770000 perm   1452 sec   (1219 perm/sec)   p_kst 9.030768e-01   p_cons 2.412429e-04   p_joint 1.422599e-03

Joint ci ratio: 7.784756e-02	ci left: 1.367086e-03	ci right 1.478367e-03	k: 2531	n:1780000
Cons ci ratio: 1.890163e-01	ci left: 2.187439e-04	ci right 2.649302e-04	k: 429	n:1780000
KS ci ratio: 9.625170e-04	ci left: 9.026493e-01	ci right 9.035191e-01	k: 1607491	n:1780000
COG2   1780000 perm   1466 sec   (1214 perm/sec)   p_kst 9.030848e-01   p_cons 2.410112e-04   p_joint 1.421910e-03

Joint ci ratio: 7.772500e-02	ci left: 1.363831e-03	ci right 1.474664e-03	k: 2539	n:1790000
Cons ci ratio: 1.883603e-01	ci left: 2.191187e-04	ci right 2.652052e-04	k: 432	n:1790000
KS ci ratio: 9.598885e-04	ci left: 9.026388e-01	ci right 9.035062e-01	k: 1616501	n:1790000
COG2   1790000 perm   1481 sec   (1209 perm/sec)   p_kst 9.030732e-01   p_cons 2.413408e-04   p_joint 1.418436e-03

Joint ci ratio: 7.748131e-02	ci left: 1.364970e-03	ci right 1.475533e-03	k: 2555	n:1800000
Cons ci ratio: 1.879269e-01	ci left: 2.189601e-04	ci right 2.648952e-04	k: 434	n:1800000
KS ci ratio: 9.573726e-04	ci left: 9.026118e-01	ci right 9.034769e-01	k: 1625481	n:1800000
COG2   1800000 perm   1496 sec   (1203 perm/sec)   p_kst 9.030450e-01   p_cons 2.411111e-04   p_joint 1.419444e-03

Joint ci ratio: 7.592107e-02	ci left: 1.414871e-03	ci right 1.527066e-03	k: 2661	n:1810000
Cons ci ratio: 1.874963e-01	ci left: 2.188034e-04	ci right 2.645885e-04	k: 436	n:1810000
KS ci ratio: 9.547075e-04	ci left: 9.026161e-01	ci right 9.034788e-01	k: 1634517	n:1810000
COG2   1810000 perm   1510 sec   (1198 perm/sec)   p_kst 9.030481e-01   p_cons 2.408840e-04   p_joint 1.470166e-03

Joint ci ratio: 7.576477e-02	ci left: 1.413026e-03	ci right 1.524834e-03	k: 2672	n:1820000
Cons ci ratio: 1.872823e-01	ci left: 2.181249e-04	ci right 2.637100e-04	k: 437	n:1820000
KS ci ratio: 9.520616e-04	ci left: 9.026209e-01	ci right 9.034812e-01	k: 1643554	n:1820000
COG2   1820000 perm   1526 sec   (1193 perm/sec)   p_kst 9.030516e-01   p_cons 2.401099e-04   p_joint 1.468132e-03

Joint ci ratio: 7.552494e-02	ci left: 1.414419e-03	ci right 1.525966e-03	k: 2689	n:1830000
Cons ci ratio: 1.866441e-01	ci left: 2.184956e-04	ci right 2.639849e-04	k: 440	n:1830000
KS ci ratio: 9.495234e-04	ci left: 9.026097e-01	ci right 9.034677e-01	k: 1652562	n:1830000
COG2   1830000 perm   1540 sec   (1188 perm/sec)   p_kst 9.030393e-01   p_cons 2.404372e-04   p_joint 1.469399e-03

Joint ci ratio: 7.532918e-02	ci left: 1.414197e-03	ci right 1.525425e-03	k: 2703	n:1840000
Cons ci ratio: 1.862223e-01	ci left: 2.183443e-04	ci right 2.636878e-04	k: 442	n:1840000
KS ci ratio: 9.469409e-04	ci left: 9.026107e-01	ci right 9.034663e-01	k: 1661592	n:1840000
COG2   1840000 perm   1555 sec   (1183 perm/sec)   p_kst 9.030391e-01   p_cons 2.402174e-04   p_joint 1.469022e-03

Joint ci ratio: 7.639798e-02	ci left: 1.366780e-03	ci right 1.475872e-03	k: 2628	n:1850000
Cons ci ratio: 1.853872e-01	ci left: 2.192257e-04	ci right 2.645251e-04	k: 446	n:1850000
KS ci ratio: 9.442218e-04	ci left: 9.026409e-01	ci right 9.034941e-01	k: 1670676	n:1850000
COG2   1850000 perm   1570 sec   (1178 perm/sec)   p_kst 9.030681e-01   p_cons 2.410811e-04   p_joint 1.420541e-03

Joint ci ratio: 7.616652e-02	ci left: 1.367869e-03	ci right 1.476703e-03	k: 2644	n:1860000
Cons ci ratio: 1.851802e-01	ci left: 2.185598e-04	ci right 2.636655e-04	k: 447	n:1860000
KS ci ratio: 9.416561e-04	ci left: 9.026465e-01	ci right 9.034974e-01	k: 1679715	n:1860000
COG2   1860000 perm   1585 sec   (1174 perm/sec)   p_kst 9.030726e-01   p_cons 2.403226e-04   p_joint 1.421505e-03

Joint ci ratio: 7.589432e-02	ci left: 1.370522e-03	ci right 1.479160e-03	k: 2663	n:1870000
Cons ci ratio: 1.843590e-01	ci left: 2.194311e-04	ci right 2.644933e-04	k: 451	n:1870000
KS ci ratio: 9.391054e-04	ci left: 9.026531e-01	ci right 9.035018e-01	k: 1688756	n:1870000
COG2   1870000 perm   1600 sec   (1168 perm/sec)   p_kst 9.030781e-01   p_cons 2.411765e-04   p_joint 1.424064e-03

Joint ci ratio: 7.569569e-02	ci left: 1.370538e-03	ci right 1.478880e-03	k: 2677	n:1880000
Cons ci ratio: 1.835485e-01	ci left: 2.202936e-04	ci right 2.653120e-04	k: 455	n:1880000
KS ci ratio: 9.366949e-04	ci left: 9.026373e-01	ci right 9.034838e-01	k: 1697755	n:1880000
COG2   1880000 perm   1616 sec   (1164 perm/sec)   p_kst 9.030612e-01   p_cons 2.420213e-04   p_joint 1.423936e-03

Joint ci ratio: 7.549860e-02	ci left: 1.370553e-03	ci right 1.478603e-03	k: 2691	n:1890000
Cons ci ratio: 1.835486e-01	ci left: 2.191280e-04	ci right 2.639082e-04	k: 455	n:1890000
KS ci ratio: 9.340036e-04	ci left: 9.026779e-01	ci right 9.035219e-01	k: 1706860	n:1890000
COG2   1890000 perm   1631 sec   (1159 perm/sec)   p_kst 9.031005e-01   p_cons 2.407407e-04   p_joint 1.423810e-03

Joint ci ratio: 7.526128e-02	ci left: 1.372119e-03	ci right 1.479936e-03	k: 2708	n:1900000
Cons ci ratio: 1.829478e-01	ci left: 2.194812e-04	ci right 2.641705e-04	k: 458	n:1900000
KS ci ratio: 9.315676e-04	ci left: 9.026743e-01	ci right 9.035161e-01	k: 1715882	n:1900000
COG2   1900000 perm   1646 sec   (1154 perm/sec)   p_kst 9.030958e-01   p_cons 2.410526e-04   p_joint 1.425263e-03

Joint ci ratio: 7.509519e-02	ci left: 1.371099e-03	ci right 1.478589e-03	k: 2720	n:1910000
Cons ci ratio: 1.827489e-01	ci left: 2.188317e-04	ci right 2.633349e-04	k: 459	n:1910000
KS ci ratio: 9.291368e-04	ci left: 9.026733e-01	ci right 9.035129e-01	k: 1724909	n:1910000
COG2   1910000 perm   1662 sec   (1150 perm/sec)   p_kst 9.030937e-01   p_cons 2.403141e-04   p_joint 1.424084e-03

Joint ci ratio: 7.629831e-02	ci left: 1.320524e-03	ci right 1.425781e-03	k: 2635	n:1920000
Cons ci ratio: 1.821558e-01	ci left: 2.191831e-04	ci right 2.635972e-04	k: 462	n:1920000
KS ci ratio: 9.266807e-04	ci left: 9.026807e-01	ci right 9.035181e-01	k: 1733952	n:1920000
COG2   1920000 perm   1677 sec   (1145 perm/sec)   p_kst 9.031000e-01   p_cons 2.406250e-04   p_joint 1.372396e-03

Joint ci ratio: 7.468458e-02	ci left: 1.372144e-03	ci right 1.479102e-03	k: 2750	n:1930000
Cons ci ratio: 1.815685e-01	ci left: 2.195311e-04	ci right 2.638565e-04	k: 465	n:1930000
KS ci ratio: 9.242878e-04	ci left: 9.026797e-01	ci right 9.035149e-01	k: 1742979	n:1930000
COG2   1930000 perm   1693 sec   (1140 perm/sec)   p_kst 9.030979e-01   p_cons 2.409326e-04   p_joint 1.424870e-03

Joint ci ratio: 7.456281e-02	ci left: 1.369624e-03	ci right 1.476203e-03	k: 2759	n:1940000
Cons ci ratio: 1.813741e-01	ci left: 2.188915e-04	ci right 2.630353e-04	k: 466	n:1940000
KS ci ratio: 9.219133e-04	ci left: 9.026787e-01	ci right 9.035118e-01	k: 1752006	n:1940000
COG2   1940000 perm   1708 sec   (1136 perm/sec)   p_kst 9.030959e-01   p_cons 2.402062e-04   p_joint 1.422165e-03

Joint ci ratio: 7.432078e-02	ci left: 1.371659e-03	ci right 1.478036e-03	k: 2777	n:1950000
Cons ci ratio: 1.807943e-01	ci left: 2.192377e-04	ci right 2.632945e-04	k: 469	n:1950000
KS ci ratio: 9.196271e-04	ci left: 9.026644e-01	ci right 9.034954e-01	k: 1761007	n:1950000
COG2   1950000 perm   1724 sec   (1131 perm/sec)   p_kst 9.030805e-01   p_cons 2.405128e-04   p_joint 1.424103e-03

Joint ci ratio: 7.417413e-02	ci left: 1.370169e-03	ci right 1.476211e-03	k: 2788	n:1960000
Cons ci ratio: 1.802200e-01	ci left: 2.195806e-04	ci right 2.635508e-04	k: 472	n:1960000
KS ci ratio: 9.171733e-04	ci left: 9.026855e-01	ci right 9.035143e-01	k: 1770077	n:1960000
COG2   1960000 perm   1741 sec   (1126 perm/sec)   p_kst 9.031005e-01   p_cons 2.408163e-04   p_joint 1.422449e-03

Joint ci ratio: 7.398867e-02	ci left: 1.370189e-03	ci right 1.475956e-03	k: 2802	n:1970000
Cons ci ratio: 1.796512e-01	ci left: 2.199203e-04	ci right 2.638044e-04	k: 475	n:1970000
KS ci ratio: 9.148876e-04	ci left: 9.026779e-01	ci right 9.035046e-01	k: 1779091	n:1970000
COG2   1970000 perm   1757 sec   (1122 perm/sec)   p_kst 9.030919e-01   p_cons 2.411168e-04   p_joint 1.422335e-03

Joint ci ratio: 7.511091e-02	ci left: 1.322129e-03	ci right 1.425802e-03	k: 2719	n:1980000
Cons ci ratio: 1.796513e-01	ci left: 2.188096e-04	ci right 2.624720e-04	k: 475	n:1980000
KS ci ratio: 9.126821e-04	ci left: 9.026583e-01	ci right 9.034830e-01	k: 1788081	n:1980000
COG2   1980000 perm   1773 sec   (1117 perm/sec)   p_kst 9.030712e-01   p_cons 2.398990e-04   p_joint 1.373232e-03

Joint ci ratio: 7.490463e-02	ci left: 1.322882e-03	ci right 1.426317e-03	k: 2734	n:1990000
Cons ci ratio: 1.796514e-01	ci left: 2.177100e-04	ci right 2.611531e-04	k: 475	n:1990000
KS ci ratio: 9.103984e-04	ci left: 9.026569e-01	ci right 9.034796e-01	k: 1797107	n:1990000
COG2   1990000 perm   1789 sec   (1112 perm/sec)   p_kst 9.030688e-01   p_cons 2.386935e-04   p_joint 1.373869e-03

Joint ci ratio: 7.536153e-02	ci left: 1.300077e-03	ci right 1.402376e-03	k: 2701	n:2000000
Cons ci ratio: 1.794630e-01	ci left: 2.170990e-04	ci right 2.603698e-04	k: 476	n:2000000
KS ci ratio: 9.080305e-04	ci left: 9.026752e-01	ci right 9.034957e-01	k: 1806172	n:2000000
COG2   2000000 perm   1806 sec   (1108 perm/sec)   p_kst 9.030860e-01   p_cons 2.380000e-04   p_joint 1.350500e-03

Joint ci ratio: 7.513934e-02	ci left: 1.301419e-03	ci right 1.403509e-03	k: 2717	n:2010000
Cons ci ratio: 1.790880e-01	ci left: 2.169693e-04	ci right 2.601140e-04	k: 478	n:2010000
KS ci ratio: 9.057789e-04	ci left: 9.026743e-01	ci right 9.034927e-01	k: 1815199	n:2010000
COG2   2010000 perm   1822 sec   (1103 perm/sec)   p_kst 9.030841e-01   p_cons 2.378109e-04   p_joint 1.351741e-03

Joint ci ratio: 7.498780e-02	ci left: 1.300320e-03	ci right 1.402108e-03	k: 2728	n:2020000
Cons ci ratio: 1.787153e-01	ci left: 2.168409e-04	ci right 2.598607e-04	k: 480	n:2020000
KS ci ratio: 9.034927e-04	ci left: 9.026833e-01	ci right 9.034997e-01	k: 1824246	n:2020000
COG2   2020000 perm   1838 sec   (1099 perm/sec)   p_kst 9.030921e-01   p_cons 2.376238e-04   p_joint 1.350495e-03

Joint ci ratio: 7.474163e-02	ci left: 1.302615e-03	ci right 1.404234e-03	k: 2746	n:2030000
Cons ci ratio: 1.781605e-01	ci left: 2.171846e-04	ci right 2.601244e-04	k: 483	n:2030000
KS ci ratio: 9.013050e-04	ci left: 9.026764e-01	ci right 9.034909e-01	k: 1833261	n:2030000
COG2   2030000 perm   1854 sec   (1095 perm/sec)   p_kst 9.030842e-01   p_cons 2.379310e-04   p_joint 1.352709e-03

Joint ci ratio: 7.452487e-02	ci left: 1.303927e-03	ci right 1.405340e-03	k: 2762	n:2040000
Cons ci ratio: 1.770662e-01	ci left: 2.189304e-04	ci right 2.619211e-04	k: 489	n:2040000
KS ci ratio: 8.990928e-04	ci left: 9.026775e-01	ci right 9.034900e-01	k: 1842292	n:2040000
COG2   2040000 perm   1871 sec   (1091 perm/sec)   p_kst 9.030843e-01   p_cons 2.397059e-04   p_joint 1.353922e-03

Joint ci ratio: 7.299354e-02	ci left: 1.353588e-03	ci right 1.456609e-03	k: 2879	n:2050000
Cons ci ratio: 1.768859e-01	ci left: 2.183286e-04	ci right 2.611528e-04	k: 490	n:2050000
KS ci ratio: 8.969168e-04	ci left: 9.026747e-01	ci right 9.034851e-01	k: 1851315	n:2050000
COG2   2050000 perm   1887 sec   (1086 perm/sec)   p_kst 9.030805e-01   p_cons 2.390244e-04   p_joint 1.404390e-03

Joint ci ratio: 7.293042e-02	ci left: 1.349400e-03	ci right 1.452010e-03	k: 2884	n:2060000
Cons ci ratio: 1.765268e-01	ci left: 2.181967e-04	ci right 2.608988e-04	k: 492	n:2060000
KS ci ratio: 8.947342e-04	ci left: 9.026763e-01	ci right 9.034847e-01	k: 1860347	n:2060000
COG2   2060000 perm   1903 sec   (1082 perm/sec)   p_kst 9.030811e-01   p_cons 2.388350e-04   p_joint 1.400000e-03

Joint ci ratio: 7.399122e-02	ci left: 1.303994e-03	ci right 1.404655e-03	k: 2802	n:2070000
Cons ci ratio: 1.761698e-01	ci left: 2.180661e-04	ci right 2.606472e-04	k: 494	n:2070000
KS ci ratio: 8.925478e-04	ci left: 9.026817e-01	ci right 9.034882e-01	k: 1869387	n:2070000
COG2   2070000 perm   1920 sec   (1078 perm/sec)   p_kst 9.030855e-01   p_cons 2.386473e-04   p_joint 1.353623e-03

Joint ci ratio: 7.071927e-02	ci left: 1.422828e-03	ci right 1.527606e-03	k: 3067	n:2080000
Cons ci ratio: 1.754622e-01	ci left: 2.188562e-04	ci right 2.614017e-04	k: 498	n:2080000
KS ci ratio: 8.903699e-04	ci left: 9.026885e-01	ci right 9.034931e-01	k: 1878430	n:2080000
COG2   2080000 perm   1936 sec   (1074 perm/sec)   p_kst 9.030913e-01   p_cons 2.394231e-04   p_joint 1.474519e-03

Joint ci ratio: 7.235579e-02	ci left: 1.351641e-03	ci right 1.453577e-03	k: 2930	n:2090000
Cons ci ratio: 1.754623e-01	ci left: 2.178090e-04	ci right 2.601510e-04	k: 498	n:2090000
KS ci ratio: 8.883342e-04	ci left: 9.026703e-01	ci right 9.034730e-01	k: 1887421	n:2090000
COG2   2090000 perm   1953 sec   (1070 perm/sec)   p_kst 9.030722e-01   p_cons 2.382775e-04   p_joint 1.401914e-03

Joint ci ratio: 6.493489e-02	ci left: 1.676118e-03	ci right 1.789073e-03	k: 3637	n:2100000
Cons ci ratio: 1.747632e-01	ci left: 2.185931e-04	ci right 2.609004e-04	k: 502	n:2100000
KS ci ratio: 8.863630e-04	ci left: 9.026423e-01	ci right 9.034432e-01	k: 1896391	n:2100000
COG2   2100000 perm   1970 sec   (1066 perm/sec)   p_kst 9.030433e-01   p_cons 2.390476e-04   p_joint 1.731905e-03

Joint ci ratio: 6.644322e-02	ci left: 1.592189e-03	ci right 1.702077e-03	k: 3474	n:2110000
Cons ci ratio: 1.744168e-01	ci left: 2.184636e-04	ci right 2.606531e-04	k: 504	n:2110000
KS ci ratio: 8.841630e-04	ci left: 9.026625e-01	ci right 9.034615e-01	k: 1905462	n:2110000
COG2   2110000 perm   1987 sec   (1062 perm/sec)   p_kst 9.030626e-01   p_cons 2.388626e-04   p_joint 1.646445e-03

Joint ci ratio: 6.630030e-02	ci left: 1.591637e-03	ci right 1.701241e-03	k: 3489	n:2120000
Cons ci ratio: 1.740725e-01	ci left: 2.183354e-04	ci right 2.604081e-04	k: 506	n:2120000
KS ci ratio: 8.820934e-04	ci left: 9.026599e-01	ci right 9.034569e-01	k: 1914485	n:2120000
COG2   2120000 perm   2003 sec   (1058 perm/sec)   p_kst 9.030590e-01   p_cons 2.386792e-04   p_joint 1.645755e-03

Joint ci ratio: 6.620562e-02	ci left: 1.588781e-03	ci right 1.698027e-03	k: 3499	n:2130000
Cons ci ratio: 1.739011e-01	ci left: 2.177593e-04	ci right 2.596755e-04	k: 507	n:2130000
KS ci ratio: 8.800217e-04	ci left: 9.026606e-01	ci right 9.034557e-01	k: 1923515	n:2130000
COG2   2130000 perm   2021 sec   (1054 perm/sec)   p_kst 9.030587e-01   p_cons 2.380282e-04   p_joint 1.642723e-03

Joint ci ratio: 6.714434e-02	ci left: 1.536784e-03	ci right 1.644011e-03	k: 3402	n:2140000
Cons ci ratio: 1.737302e-01	ci left: 2.171887e-04	ci right 2.589496e-04	k: 508	n:2140000
KS ci ratio: 8.779223e-04	ci left: 9.026696e-01	ci right 9.034629e-01	k: 1932563	n:2140000
COG2   2140000 perm   2037 sec   (1050 perm/sec)   p_kst 9.030668e-01   p_cons 2.373832e-04   p_joint 1.589720e-03

Joint ci ratio: 6.388924e-02	ci left: 1.692054e-03	ci right 1.804179e-03	k: 3757	n:2150000
Cons ci ratio: 1.732205e-01	ci left: 2.175133e-04	ci right 2.592011e-04	k: 511	n:2150000
KS ci ratio: 8.756983e-04	ci left: 9.027066e-01	ci right 9.034979e-01	k: 1941671	n:2150000
COG2   2150000 perm   2054 sec   (1047 perm/sec)   p_kst 9.031028e-01   p_cons 2.376744e-04   p_joint 1.747442e-03

Joint ci ratio: 6.370298e-02	ci left: 1.694243e-03	ci right 1.806174e-03	k: 3779	n:2160000
Cons ci ratio: 1.727152e-01	ci left: 2.178351e-04	ci right 2.594500e-04	k: 514	n:2160000
KS ci ratio: 8.736689e-04	ci left: 9.027075e-01	ci right 9.034970e-01	k: 1950702	n:2160000
COG2   2160000 perm   2072 sec   (1043 perm/sec)   p_kst 9.031028e-01   p_cons 2.379630e-04   p_joint 1.749537e-03

Joint ci ratio: 6.513428e-02	ci left: 1.612074e-03	ci right 1.721060e-03	k: 3615	n:2170000
Cons ci ratio: 1.725478e-01	ci left: 2.172721e-04	ci right 2.587351e-04	k: 515	n:2170000
KS ci ratio: 8.716743e-04	ci left: 9.027043e-01	ci right 9.034919e-01	k: 1959724	n:2170000
COG2   2170000 perm   2090 sec   (1038 perm/sec)   p_kst 9.030986e-01   p_cons 2.373272e-04   p_joint 1.665899e-03

Joint ci ratio: 6.500859e-02	ci left: 1.610997e-03	ci right 1.719692e-03	k: 3629	n:2180000
Cons ci ratio: 1.720484e-01	ci left: 2.175923e-04	ci right 2.589837e-04	k: 518	n:2180000
KS ci ratio: 8.695769e-04	ci left: 9.027245e-01	ci right 9.035102e-01	k: 1968797	n:2180000
COG2   2180000 perm   2107 sec   (1035 perm/sec)   p_kst 9.031179e-01   p_cons 2.376147e-04   p_joint 1.664679e-03

Joint ci ratio: 6.485690e-02	ci left: 1.611277e-03	ci right 1.719728e-03	k: 3646	n:2190000
Cons ci ratio: 1.717178e-01	ci left: 2.174727e-04	ci right 2.587536e-04	k: 520	n:2190000
KS ci ratio: 8.675467e-04	ci left: 9.027340e-01	ci right 9.035179e-01	k: 1977847	n:2190000
COG2   2190000 perm   2125 sec   (1030 perm/sec)   p_kst 9.031265e-01   p_cons 2.374429e-04   p_joint 1.664840e-03

Joint ci ratio: 6.468858e-02	ci left: 1.612450e-03	ci right 1.720687e-03	k: 3665	n:2200000
Cons ci ratio: 1.713892e-01	ci left: 2.173542e-04	ci right 2.585256e-04	k: 522	n:2200000
KS ci ratio: 8.654834e-04	ci left: 9.027530e-01	ci right 9.035351e-01	k: 1986918	n:2200000
COG2   2200000 perm   2143 sec   (1027 perm/sec)   p_kst 9.031445e-01   p_cons 2.372727e-04   p_joint 1.665909e-03

Joint ci ratio: 6.460063e-02	ci left: 1.609605e-03	ci right 1.717499e-03	k: 3675	n:2210000
Cons ci ratio: 1.712257e-01	ci left: 2.168038e-04	ci right 2.578276e-04	k: 523	n:2210000
KS ci ratio: 8.635821e-04	ci left: 9.027419e-01	ci right 9.035222e-01	k: 1995923	n:2210000
COG2   2210000 perm   2161 sec   (1023 perm/sec)   p_kst 9.031326e-01   p_cons 2.366516e-04   p_joint 1.662896e-03

Joint ci ratio: 6.545356e-02	ci left: 1.560256e-03	ci right 1.666276e-03	k: 3580	n:2220000
Cons ci ratio: 1.708998e-01	ci left: 2.166895e-04	ci right 2.576057e-04	k: 525	n:2220000
KS ci ratio: 8.616867e-04	ci left: 9.027322e-01	ci right 9.035109e-01	k: 2004931	n:2220000
COG2   2220000 perm   2178 sec   (1019 perm/sec)   p_kst 9.031221e-01   p_cons 2.364865e-04   p_joint 1.612613e-03

Joint ci ratio: 6.529873e-02	ci left: 1.560758e-03	ci right 1.666551e-03	k: 3597	n:2230000
Cons ci ratio: 1.708999e-01	ci left: 2.157178e-04	ci right 2.564505e-04	k: 525	n:2230000
KS ci ratio: 8.598719e-04	ci left: 9.027087e-01	ci right 9.034857e-01	k: 2013908	n:2230000
COG2   2230000 perm   2196 sec   (1015 perm/sec)   p_kst 9.030978e-01   p_cons 2.354260e-04   p_joint 1.613004e-03

Joint ci ratio: 6.513598e-02	ci left: 1.561696e-03	ci right 1.667278e-03	k: 3615	n:2240000
Cons ci ratio: 1.704146e-01	ci left: 2.160369e-04	ci right 2.567021e-04	k: 528	n:2240000
KS ci ratio: 8.579175e-04	ci left: 9.027163e-01	ci right 9.034916e-01	k: 2022954	n:2240000
COG2   2240000 perm   2214 sec   (1012 perm/sec)   p_kst 9.031045e-01   p_cons 2.357143e-04   p_joint 1.613839e-03

Joint ci ratio: 6.494759e-02	ci left: 1.563936e-03	ci right 1.669353e-03	k: 3636	n:2250000
Cons ci ratio: 1.699334e-01	ci left: 2.163533e-04	ci right 2.569513e-04	k: 531	n:2250000
KS ci ratio: 8.560438e-04	ci left: 9.027101e-01	ci right 9.034836e-01	k: 2031969	n:2250000
COG2   2250000 perm   2231 sec   (1008 perm/sec)   p_kst 9.030973e-01   p_cons 2.360000e-04   p_joint 1.616000e-03

Joint ci ratio: 6.482298e-02	ci left: 1.563110e-03	ci right 1.668262e-03	k: 3650	n:2260000
Cons ci ratio: 1.692981e-01	ci left: 2.170907e-04	ci right 2.576593e-04	k: 535	n:2260000
KS ci ratio: 8.542298e-04	ci left: 9.026941e-01	ci right 9.034659e-01	k: 2040962	n:2260000
COG2   2260000 perm   2249 sec   (1005 perm/sec)   p_kst 9.030805e-01   p_cons 2.367257e-04   p_joint 1.615044e-03

Joint ci ratio: 6.339565e-02	ci left: 1.628182e-03	ci right 1.735210e-03	k: 3816	n:2270000
Cons ci ratio: 1.685138e-01	ci left: 2.182439e-04	ci right 2.588199e-04	k: 540	n:2270000
KS ci ratio: 8.522900e-04	ci left: 9.027065e-01	ci right 9.034766e-01	k: 2050019	n:2270000
COG2   2270000 perm   2266 sec   (1002 perm/sec)   p_kst 9.030921e-01   p_cons 2.378855e-04   p_joint 1.681057e-03

Joint ci ratio: 6.429642e-02	ci left: 1.575290e-03	ci right 1.680368e-03	k: 3710	n:2280000
Cons ci ratio: 1.683584e-01	ci left: 2.177068e-04	ci right 2.581418e-04	k: 541	n:2280000
KS ci ratio: 8.504698e-04	ci left: 9.026968e-01	ci right 9.034653e-01	k: 2059026	n:2280000
COG2   2280000 perm   2285 sec   (998 perm/sec)   p_kst 9.030816e-01   p_cons 2.372807e-04   p_joint 1.627193e-03

Joint ci ratio: 6.414964e-02	ci left: 1.575716e-03	ci right 1.680573e-03	k: 3727	n:2290000
Cons ci ratio: 1.678943e-01	ci left: 2.180111e-04	ci right 2.583796e-04	k: 544	n:2290000
KS ci ratio: 8.486803e-04	ci left: 9.026833e-01	ci right 9.034502e-01	k: 2068024	n:2290000
COG2   2290000 perm   2303 sec   (994 perm/sec)   p_kst 9.030672e-01   p_cons 2.375546e-04   p_joint 1.627511e-03

Joint ci ratio: 6.403813e-02	ci left: 1.574426e-03	ci right 1.679009e-03	k: 3740	n:2300000
Cons ci ratio: 1.677406e-01	ci left: 2.174797e-04	ci right 2.577093e-04	k: 545	n:2300000
KS ci ratio: 8.468011e-04	ci left: 9.026908e-01	ci right 9.034560e-01	k: 2077070	n:2300000
COG2   2300000 perm   2321 sec   (991 perm/sec)   p_kst 9.030739e-01   p_cons 2.369565e-04   p_joint 1.626087e-03

Joint ci ratio: 6.394426e-02	ci left: 1.572296e-03	ci right 1.676579e-03	k: 3751	n:2310000
Cons ci ratio: 1.677406e-01	ci left: 2.165382e-04	ci right 2.565936e-04	k: 545	n:2310000
KS ci ratio: 8.450597e-04	ci left: 9.026723e-01	ci right 9.034358e-01	k: 2086056	n:2310000
COG2   2310000 perm   2341 sec   (987 perm/sec)   p_kst 9.030545e-01   p_cons 2.359307e-04   p_joint 1.623810e-03

Joint ci ratio: 6.379140e-02	ci left: 1.573154e-03	ci right 1.677235e-03	k: 3769	n:2320000
Cons ci ratio: 1.671295e-01	ci left: 2.172568e-04	ci right 2.572840e-04	k: 549	n:2320000
KS ci ratio: 8.431753e-04	ci left: 9.026858e-01	ci right 9.034477e-01	k: 2095116	n:2320000
COG2   2320000 perm   2359 sec   (984 perm/sec)   p_kst 9.030672e-01   p_cons 2.366379e-04   p_joint 1.624569e-03

Joint ci ratio: 6.359761e-02	ci left: 1.576116e-03	ci right 1.680064e-03	k: 3792	n:2330000
Cons ci ratio: 1.668265e-01	ci left: 2.171468e-04	ci right 2.570739e-04	k: 551	n:2330000
KS ci ratio: 8.412788e-04	ci left: 9.027044e-01	ci right 9.034646e-01	k: 2104188	n:2330000
COG2   2330000 perm   2377 sec   (980 perm/sec)   p_kst 9.030850e-01   p_cons 2.364807e-04   p_joint 1.627468e-03

Joint ci ratio: 6.343055e-02	ci left: 1.577792e-03	ci right 1.681567e-03	k: 3812	n:2340000
Cons ci ratio: 1.665251e-01	ci left: 2.170379e-04	ci right 2.568657e-04	k: 553	n:2340000
KS ci ratio: 8.394625e-04	ci left: 9.027087e-01	ci right 9.034672e-01	k: 2113227	n:2340000
COG2   2340000 perm   2395 sec   (977 perm/sec)   p_kst 9.030885e-01   p_cons 2.363248e-04   p_joint 1.629060e-03

Joint ci ratio: 6.329788e-02	ci left: 1.577778e-03	ci right 1.681328e-03	k: 3828	n:2350000
Cons ci ratio: 1.660760e-01	ci left: 2.173378e-04	ci right 2.571023e-04	k: 556	n:2350000
KS ci ratio: 8.376234e-04	ci left: 9.027202e-01	ci right 9.034771e-01	k: 2122283	n:2350000
COG2   2350000 perm   2414 sec   (973 perm/sec)   p_kst 9.030991e-01   p_cons 2.365957e-04   p_joint 1.628936e-03

Joint ci ratio: 6.312495e-02	ci left: 1.579851e-03	ci right 1.683243e-03	k: 3849	n:2360000
Cons ci ratio: 1.659272e-01	ci left: 2.168230e-04	ci right 2.564542e-04	k: 557	n:2360000
KS ci ratio: 8.358934e-04	ci left: 9.027113e-01	ci right 9.034666e-01	k: 2131291	n:2360000
COG2   2360000 perm   2433 sec   (970 perm/sec)   p_kst 9.030894e-01   p_cons 2.360169e-04   p_joint 1.630932e-03

Joint ci ratio: 6.299420e-02	ci left: 1.579829e-03	ci right 1.682998e-03	k: 3865	n:2370000
Cons ci ratio: 1.656306e-01	ci left: 2.167170e-04	ci right 2.562510e-04	k: 559	n:2370000
KS ci ratio: 8.341117e-04	ci left: 9.027155e-01	ci right 9.034692e-01	k: 2140330	n:2370000
COG2   2370000 perm   2452 sec   (967 perm/sec)   p_kst 9.030928e-01   p_cons 2.358650e-04   p_joint 1.630802e-03

Joint ci ratio: 6.192077e-02	ci left: 1.629030e-03	ci right 1.733533e-03	k: 4000	n:2380000
Cons ci ratio: 1.653357e-01	ci left: 2.166120e-04	ci right 2.560494e-04	k: 561	n:2380000
KS ci ratio: 8.323534e-04	ci left: 9.027172e-01	ci right 9.034693e-01	k: 2149363	n:2380000
COG2   2380000 perm   2471 sec   (963 perm/sec)   p_kst 9.030937e-01   p_cons 2.357143e-04   p_joint 1.680672e-03

Joint ci ratio: 6.182047e-02	ci left: 1.627569e-03	ci right 1.731804e-03	k: 4013	n:2390000
Cons ci ratio: 1.651888e-01	ci left: 2.161067e-04	ci right 2.554138e-04	k: 562	n:2390000
KS ci ratio: 8.305406e-04	ci left: 9.027326e-01	ci right 9.034831e-01	k: 2158429	n:2390000
COG2   2390000 perm   2490 sec   (960 perm/sec)   p_kst 9.031084e-01   p_cons 2.351464e-04   p_joint 1.679079e-03

Joint ci ratio: 6.170530e-02	ci left: 1.626941e-03	ci right 1.730934e-03	k: 4028	n:2400000
Cons ci ratio: 1.648962e-01	ci left: 2.160052e-04	ci right 2.552173e-04	k: 564	n:2400000
KS ci ratio: 8.287909e-04	ci left: 9.027372e-01	ci right 9.034860e-01	k: 2167469	n:2400000
COG2   2400000 perm   2508 sec   (957 perm/sec)   p_kst 9.031121e-01   p_cons 2.350000e-04   p_joint 1.678333e-03

Joint ci ratio: 6.152985e-02	ci left: 1.629586e-03	ci right 1.733443e-03	k: 4051	n:2410000
Cons ci ratio: 1.647505e-01	ci left: 2.155067e-04	ci right 2.545903e-04	k: 565	n:2410000
KS ci ratio: 8.269797e-04	ci left: 9.027570e-01	ci right 9.035043e-01	k: 2176546	n:2410000
COG2   2410000 perm   2528 sec   (953 perm/sec)   p_kst 9.031311e-01   p_cons 2.344398e-04   p_joint 1.680913e-03

Joint ci ratio: 6.138607e-02	ci left: 1.630583e-03	ci right 1.734251e-03	k: 4070	n:2420000
Cons ci ratio: 1.643156e-01	ci left: 2.158049e-04	ci right 2.548289e-04	k: 568	n:2420000
KS ci ratio: 8.251646e-04	ci left: 9.027800e-01	ci right 9.035256e-01	k: 2185631	n:2420000
COG2   2420000 perm   2547 sec   (950 perm/sec)   p_kst 9.031533e-01   p_cons 2.347107e-04   p_joint 1.681818e-03

Joint ci ratio: 6.126580e-02	ci left: 1.630356e-03	ci right 1.733800e-03	k: 4086	n:2430000
Cons ci ratio: 1.640276e-01	ci left: 2.157060e-04	ci right 2.546371e-04	k: 570	n:2430000
KS ci ratio: 8.234467e-04	ci left: 9.027847e-01	ci right 9.035288e-01	k: 2194672	n:2430000
COG2   2430000 perm   2568 sec   (946 perm/sec)   p_kst 9.031572e-01   p_cons 2.345679e-04   p_joint 1.681481e-03

Joint ci ratio: 6.112386e-02	ci left: 1.631342e-03	ci right 1.734600e-03	k: 4105	n:2440000
Cons ci ratio: 1.631724e-01	ci left: 2.171803e-04	ci right 2.561531e-04	k: 576	n:2440000
KS ci ratio: 8.216739e-04	ci left: 9.028033e-01	ci right 9.035458e-01	k: 2203747	n:2440000
COG2   2440000 perm   2587 sec   (943 perm/sec)   p_kst 9.031750e-01   p_cons 2.360656e-04   p_joint 1.682377e-03

Joint ci ratio: 6.104965e-02	ci left: 1.628703e-03	ci right 1.731664e-03	k: 4115	n:2450000
Cons ci ratio: 1.631725e-01	ci left: 2.162939e-04	ci right 2.551076e-04	k: 576	n:2450000
KS ci ratio: 8.200025e-04	ci left: 9.028025e-01	ci right 9.035435e-01	k: 2212775	n:2450000
COG2   2450000 perm   2606 sec   (940 perm/sec)   p_kst 9.031735e-01   p_cons 2.351020e-04   p_joint 1.679592e-03

Joint ci ratio: 6.092396e-02	ci left: 1.628887e-03	ci right 1.731641e-03	k: 4132	n:2460000
Cons ci ratio: 1.628904e-01	ci left: 2.161944e-04	ci right 2.549167e-04	k: 578	n:2460000
KS ci ratio: 8.182899e-04	ci left: 9.028127e-01	ci right 9.035522e-01	k: 2221830	n:2460000
COG2   2460000 perm   2625 sec   (937 perm/sec)   p_kst 9.031829e-01   p_cons 2.349593e-04   p_joint 1.679675e-03

Joint ci ratio: 5.831776e-02	ci left: 1.772654e-03	ci right 1.879532e-03	k: 4509	n:2470000
Cons ci ratio: 1.623306e-01	ci left: 2.168727e-04	ci right 2.555699e-04	k: 582	n:2470000
KS ci ratio: 8.166560e-04	ci left: 9.028083e-01	ci right 9.035462e-01	k: 2230849	n:2470000
COG2   2470000 perm   2644 sec   (934 perm/sec)   p_kst 9.031777e-01   p_cons 2.356275e-04   p_joint 1.825506e-03

Joint ci ratio: 5.820174e-02	ci left: 1.772658e-03	ci right 1.879317e-03	k: 4527	n:2480000
Cons ci ratio: 1.619145e-01	ci left: 2.171588e-04	ci right 2.557981e-04	k: 585	n:2480000
KS ci ratio: 8.149586e-04	ci left: 9.028196e-01	ci right 9.035561e-01	k: 2239907	n:2480000
COG2   2480000 perm   2663 sec   (931 perm/sec)   p_kst 9.031883e-01   p_cons 2.358871e-04   p_joint 1.825403e-03

Joint ci ratio: 5.809280e-02	ci left: 1.772267e-03	ci right 1.878696e-03	k: 4544	n:2490000
Cons ci ratio: 1.616390e-01	ci left: 2.170574e-04	ci right 2.556065e-04	k: 587	n:2490000
KS ci ratio: 8.132922e-04	ci left: 9.028264e-01	ci right 9.035614e-01	k: 2248954	n:2490000
COG2   2490000 perm   2683 sec   (928 perm/sec)   p_kst 9.031944e-01   p_cons 2.357430e-04   p_joint 1.824900e-03

Joint ci ratio: 5.795902e-02	ci left: 1.773456e-03	ci right 1.879703e-03	k: 4565	n:2500000
Cons ci ratio: 1.610919e-01	ci left: 2.177246e-04	ci right 2.562486e-04	k: 591	n:2500000
KS ci ratio: 8.116620e-04	ci left: 9.028276e-01	ci right 9.035611e-01	k: 2257987	n:2500000
COG2   2500000 perm   2703 sec   (925 perm/sec)   p_kst 9.031948e-01   p_cons 2.364000e-04   p_joint 1.826000e-03

Joint ci ratio: 5.782617e-02	ci left: 1.774636e-03	ci right 1.880702e-03	k: 4586	n:2510000
Cons ci ratio: 1.602816e-01	ci left: 2.191515e-04	ci right 2.577142e-04	k: 597	n:2510000
KS ci ratio: 8.099549e-04	ci left: 9.028475e-01	ci right 9.035795e-01	k: 2267067	n:2510000
COG2   2510000 perm   2722 sec   (922 perm/sec)   p_kst 9.032139e-01   p_cons 2.378486e-04   p_joint 1.827092e-03

Joint ci ratio: 5.633856e-02	ci left: 1.863431e-03	ci right 1.971845e-03	k: 4831	n:2520000
Cons ci ratio: 1.600142e-01	ci left: 2.190437e-04	ci right 2.575169e-04	k: 599	n:2520000
KS ci ratio: 8.083942e-04	ci left: 9.028378e-01	ci right 9.035684e-01	k: 2276073	n:2520000
COG2   2520000 perm   2742 sec   (919 perm/sec)   p_kst 9.032036e-01   p_cons 2.376984e-04   p_joint 1.917063e-03

Joint ci ratio: 5.758811e-02	ci left: 1.775411e-03	ci right 1.881071e-03	k: 4624	n:2530000
Cons ci ratio: 1.597482e-01	ci left: 2.189368e-04	ci right 2.573212e-04	k: 601	n:2530000
KS ci ratio: 8.067567e-04	ci left: 9.028469e-01	ci right 9.035759e-01	k: 2285126	n:2530000
COG2   2530000 perm   2762 sec   (916 perm/sec)   p_kst 9.032119e-01   p_cons 2.375494e-04   p_joint 1.827668e-03

Joint ci ratio: 5.745158e-02	ci left: 1.776958e-03	ci right 1.882451e-03	k: 4646	n:2540000
Cons ci ratio: 1.593517e-01	ci left: 2.192087e-04	ci right 2.575364e-04	k: 604	n:2540000
KS ci ratio: 8.051655e-04	ci left: 9.028479e-01	ci right 9.035756e-01	k: 2294159	n:2540000
COG2   2540000 perm   2782 sec   (913 perm/sec)   p_kst 9.032122e-01   p_cons 2.377953e-04   p_joint 1.829134e-03

Joint ci ratio: 5.735296e-02	ci left: 1.776174e-03	ci right 1.881433e-03	k: 4662	n:2550000
Cons ci ratio: 1.593517e-01	ci left: 2.183491e-04	ci right 2.565264e-04	k: 604	n:2550000
KS ci ratio: 8.036016e-04	ci left: 9.028451e-01	ci right 9.035713e-01	k: 2303182	n:2550000
COG2   2550000 perm   2802 sec   (910 perm/sec)   p_kst 9.032086e-01   p_cons 2.368627e-04   p_joint 1.828235e-03

Joint ci ratio: 5.724871e-02	ci left: 1.775781e-03	ci right 1.880820e-03	k: 4679	n:2560000
Cons ci ratio: 1.593518e-01	ci left: 2.174962e-04	ci right 2.555244e-04	k: 604	n:2560000
KS ci ratio: 8.020199e-04	ci left: 9.028481e-01	ci right 9.035729e-01	k: 2312220	n:2560000
COG2   2560000 perm   2822 sec   (907 perm/sec)   p_kst 9.032109e-01   p_cons 2.359375e-04   p_joint 1.827734e-03

Joint ci ratio: 5.713894e-02	ci left: 1.775775e-03	ci right 1.880606e-03	k: 4697	n:2570000
Cons ci ratio: 1.590891e-01	ci left: 2.173971e-04	ci right 2.553393e-04	k: 606	n:2570000
KS ci ratio: 8.004974e-04	ci left: 9.028402e-01	ci right 9.035636e-01	k: 2321230	n:2570000
COG2   2570000 perm   2842 sec   (904 perm/sec)   p_kst 9.032023e-01   p_cons 2.357977e-04   p_joint 1.827626e-03

Joint ci ratio: 5.699348e-02	ci left: 1.778062e-03	ci right 1.882751e-03	k: 4721	n:2580000
Cons ci ratio: 1.588276e-01	ci left: 2.172988e-04	ci right 2.551556e-04	k: 608	n:2580000
KS ci ratio: 7.988755e-04	ci left: 9.028560e-01	ci right 9.035780e-01	k: 2330301	n:2580000
COG2   2580000 perm   2862 sec   (901 perm/sec)   p_kst 9.032174e-01   p_cons 2.356589e-04   p_joint 1.829845e-03

Joint ci ratio: 5.684913e-02	ci left: 1.780331e-03	ci right 1.884880e-03	k: 4745	n:2590000
Cons ci ratio: 1.583085e-01	ci left: 2.179429e-04	ci right 2.557761e-04	k: 612	n:2590000
KS ci ratio: 7.972617e-04	ci left: 9.028721e-01	ci right 9.035926e-01	k: 2339373	n:2590000
COG2   2590000 perm   2882 sec   (899 perm/sec)   p_kst 9.032328e-01   p_cons 2.362934e-04   p_joint 1.832046e-03

Joint ci ratio: 5.671779e-02	ci left: 1.781825e-03	ci right 1.886212e-03	k: 4767	n:2600000
Cons ci ratio: 1.580509e-01	ci left: 2.178435e-04	ci right 2.555920e-04	k: 614	n:2600000
KS ci ratio: 7.958361e-04	ci left: 9.028488e-01	ci right 9.035680e-01	k: 2348343	n:2600000
COG2   2600000 perm   2902 sec   (896 perm/sec)   p_kst 9.032088e-01   p_cons 2.361538e-04   p_joint 1.833462e-03

Joint ci ratio: 5.662289e-02	ci left: 1.781042e-03	ci right 1.885203e-03	k: 4783	n:2610000
Cons ci ratio: 1.577946e-01	ci left: 2.177448e-04	ci right 2.554093e-04	k: 616	n:2610000
KS ci ratio: 7.943433e-04	ci left: 9.028422e-01	ci right 9.035600e-01	k: 2357356	n:2610000
COG2   2610000 perm   2922 sec   (893 perm/sec)   p_kst 9.032015e-01   p_cons 2.360153e-04   p_joint 1.832567e-03

Joint ci ratio: 5.648721e-02	ci left: 1.782898e-03	ci right 1.886910e-03	k: 4806	n:2620000
Cons ci ratio: 1.571590e-01	ci left: 2.187470e-04	ci right 2.564179e-04	k: 621	n:2620000
KS ci ratio: 7.928571e-04	ci left: 9.028360e-01	ci right 9.035524e-01	k: 2366370	n:2620000
COG2   2620000 perm   2942 sec   (890 perm/sec)   p_kst 9.031947e-01   p_cons 2.370229e-04   p_joint 1.834351e-03

Joint ci ratio: 5.638761e-02	ci left: 1.782492e-03	ci right 1.886290e-03	k: 4823	n:2630000
Cons ci ratio: 1.566560e-01	ci left: 2.193764e-04	ci right 2.570235e-04	k: 625	n:2630000
KS ci ratio: 7.913379e-04	ci left: 9.028390e-01	ci right 9.035541e-01	k: 2375408	n:2630000
COG2   2630000 perm   2963 sec   (887 perm/sec)   p_kst 9.031970e-01   p_cons 2.376426e-04   p_joint 1.833840e-03

Joint ci ratio: 5.627688e-02	ci left: 1.782836e-03	ci right 1.886444e-03	k: 4842	n:2640000
Cons ci ratio: 1.561579e-01	ci left: 2.200013e-04	ci right 2.576244e-04	k: 629	n:2640000
KS ci ratio: 7.898445e-04	ci left: 9.028381e-01	ci right 9.035519e-01	k: 2384436	n:2640000
COG2   2640000 perm   2984 sec   (885 perm/sec)   p_kst 9.031955e-01   p_cons 2.382576e-04   p_joint 1.834091e-03

Joint ci ratio: 5.616681e-02	ci left: 1.783177e-03	ci right 1.886596e-03	k: 4861	n:2650000
Cons ci ratio: 1.559106e-01	ci left: 2.198964e-04	ci right 2.574364e-04	k: 631	n:2650000
KS ci ratio: 7.883698e-04	ci left: 9.028351e-01	ci right 9.035475e-01	k: 2393458	n:2650000
COG2   2650000 perm   3005 sec   (882 perm/sec)   p_kst 9.031917e-01   p_cons 2.381132e-04   p_joint 1.834340e-03

Joint ci ratio: 5.605738e-02	ci left: 1.783516e-03	ci right 1.886746e-03	k: 4880	n:2660000
Cons ci ratio: 1.557874e-01	ci left: 2.194310e-04	ci right 2.568591e-04	k: 632	n:2660000
KS ci ratio: 7.868271e-04	ci left: 9.028489e-01	ci right 9.035600e-01	k: 2402525	n:2660000
COG2   2660000 perm   3025 sec   (879 perm/sec)   p_kst 9.032049e-01   p_cons 2.375940e-04   p_joint 1.834586e-03

Joint ci ratio: 5.597147e-02	ci left: 1.782376e-03	ci right 1.885376e-03	k: 4895	n:2670000
Cons ci ratio: 1.555419e-01	ci left: 2.193290e-04	ci right 2.566753e-04	k: 634	n:2670000
KS ci ratio: 7.853843e-04	ci left: 9.028425e-01	ci right 9.035522e-01	k: 2411538	n:2670000
COG2   2670000 perm   3046 sec   (876 perm/sec)   p_kst 9.031978e-01   p_cons 2.374532e-04   p_joint 1.833333e-03

Joint ci ratio: 5.583473e-02	ci left: 1.784555e-03	ci right 1.887422e-03	k: 4919	n:2680000
Cons ci ratio: 1.555420e-01	ci left: 2.185106e-04	ci right 2.557176e-04	k: 634	n:2680000
KS ci ratio: 7.838139e-04	ci left: 9.028663e-01	ci right 9.035746e-01	k: 2420632	n:2680000
COG2   2680000 perm   3068 sec   (874 perm/sec)   p_kst 9.032209e-01   p_cons 2.365672e-04   p_joint 1.835448e-03

Joint ci ratio: 5.571592e-02	ci left: 1.785619e-03	ci right 1.888321e-03	k: 4940	n:2690000
Cons ci ratio: 1.550544e-01	ci left: 2.191275e-04	ci right 2.563117e-04	k: 638	n:2690000
KS ci ratio: 7.823560e-04	ci left: 9.028669e-01	ci right 9.035739e-01	k: 2429664	n:2690000
COG2   2690000 perm   3089 sec   (871 perm/sec)   p_kst 9.032208e-01   p_cons 2.371747e-04   p_joint 1.836431e-03

Joint ci ratio: 5.564846e-02	ci left: 1.783388e-03	ci right 1.885833e-03	k: 4952	n:2700000
Cons ci ratio: 1.546916e-01	ci left: 2.193840e-04	ci right 2.565165e-04	k: 641	n:2700000
KS ci ratio: 7.809360e-04	ci left: 9.028608e-01	ci right 9.035665e-01	k: 2438678	n:2700000
COG2   2700000 perm   3111 sec   (868 perm/sec)   p_kst 9.032141e-01   p_cons 2.374074e-04   p_joint 1.834074e-03

Joint ci ratio: 5.555321e-02	ci left: 1.782993e-03	ci right 1.885235e-03	k: 4969	n:2710000
Cons ci ratio: 1.543315e-01	ci left: 2.196387e-04	ci right 2.567198e-04	k: 644	n:2710000
KS ci ratio: 7.794299e-04	ci left: 9.028758e-01	ci right 9.035802e-01	k: 2447749	n:2710000
COG2   2710000 perm   3132 sec   (865 perm/sec)   p_kst 9.032284e-01   p_cons 2.376384e-04   p_joint 1.833579e-03

Joint ci ratio: 5.544176e-02	ci left: 1.783689e-03	ci right 1.885759e-03	k: 4989	n:2720000
Cons ci ratio: 1.540927e-01	ci left: 2.195381e-04	ci right 2.565396e-04	k: 646	n:2720000
KS ci ratio: 7.779619e-04	ci left: 9.028841e-01	ci right 9.035871e-01	k: 2456802	n:2720000
COG2   2720000 perm   3153 sec   (863 perm/sec)   p_kst 9.032360e-01   p_cons 2.375000e-04   p_joint 1.834191e-03

Joint ci ratio: 5.532544e-02	ci left: 1.784741e-03	ci right 1.886650e-03	k: 5010	n:2730000
Cons ci ratio: 1.538551e-01	ci left: 2.194383e-04	ci right 2.563607e-04	k: 648	n:2730000
KS ci ratio: 7.764891e-04	ci left: 9.028952e-01	ci right 9.035969e-01	k: 2465863	n:2730000
COG2   2730000 perm   3176 sec   (860 perm/sec)   p_kst 9.032465e-01   p_cons 2.373626e-04   p_joint 1.835165e-03

Joint ci ratio: 5.522084e-02	ci left: 1.785066e-03	ci right 1.886795e-03	k: 5029	n:2740000
Cons ci ratio: 1.535008e-01	ci left: 2.196902e-04	ci right 2.565620e-04	k: 651	n:2740000
KS ci ratio: 7.750830e-04	ci left: 9.028931e-01	ci right 9.035936e-01	k: 2474888	n:2740000
COG2   2740000 perm   3197 sec   (857 perm/sec)   p_kst 9.032438e-01   p_cons 2.375912e-04   p_joint 1.835401e-03

Joint ci ratio: 5.516063e-02	ci left: 1.782519e-03	ci right 1.883989e-03	k: 5040	n:2750000
Cons ci ratio: 1.533832e-01	ci left: 2.192410e-04	ci right 2.560067e-04	k: 652	n:2750000
KS ci ratio: 7.736812e-04	ci left: 9.028918e-01	ci right 9.035910e-01	k: 2483915	n:2750000
COG2   2750000 perm   3219 sec   (854 perm/sec)   p_kst 9.032418e-01   p_cons 2.370909e-04   p_joint 1.832727e-03

Joint ci ratio: 5.506242e-02	ci left: 1.782493e-03	ci right 1.883774e-03	k: 5058	n:2760000
Cons ci ratio: 1.530321e-01	ci left: 2.194919e-04	ci right 2.562077e-04	k: 655	n:2760000
KS ci ratio: 7.722966e-04	ci left: 9.028883e-01	ci right 9.035862e-01	k: 2492936	n:2760000
COG2   2760000 perm   3240 sec   (852 perm/sec)   p_kst 9.032377e-01   p_cons 2.373188e-04   p_joint 1.832609e-03

Joint ci ratio: 5.494304e-02	ci left: 1.783891e-03	ci right 1.885025e-03	k: 5080	n:2770000
Cons ci ratio: 1.526833e-01	ci left: 2.197412e-04	ci right 2.564072e-04	k: 658	n:2770000
KS ci ratio: 7.708255e-04	ci left: 9.029062e-01	ci right 9.036028e-01	k: 2502016	n:2770000
COG2   2770000 perm   3261 sec   (849 perm/sec)   p_kst 9.032549e-01   p_cons 2.375451e-04   p_joint 1.833935e-03

Joint ci ratio: 5.482983e-02	ci left: 1.784924e-03	ci right 1.885902e-03	k: 5101	n:2780000
Cons ci ratio: 1.518787e-01	ci left: 2.213728e-04	ci right 2.580987e-04	k: 665	n:2780000
KS ci ratio: 7.694340e-04	ci left: 9.029077e-01	ci right 9.036030e-01	k: 2511051	n:2780000
COG2   2780000 perm   3283 sec   (847 perm/sec)   p_kst 9.032558e-01   p_cons 2.392086e-04   p_joint 1.834892e-03

Joint ci ratio: 5.476552e-02	ci left: 1.782769e-03	ci right 1.883503e-03	k: 5113	n:2790000
Cons ci ratio: 1.514246e-01	ci left: 2.219586e-04	ci right 2.586617e-04	k: 669	n:2790000
KS ci ratio: 7.680925e-04	ci left: 9.028995e-01	ci right 9.035936e-01	k: 2520059	n:2790000
COG2   2790000 perm   3304 sec   (844 perm/sec)   p_kst 9.032470e-01   p_cons 2.397849e-04   p_joint 1.832616e-03

Joint ci ratio: 5.465873e-02	ci left: 1.783447e-03	ci right 1.884016e-03	k: 5133	n:2800000
Cons ci ratio: 1.514247e-01	ci left: 2.211659e-04	ci right 2.577379e-04	k: 669	n:2800000
KS ci ratio: 7.667627e-04	ci left: 9.028903e-01	ci right 9.035832e-01	k: 2529064	n:2800000
COG2   2800000 perm   3326 sec   (842 perm/sec)   p_kst 9.032371e-01   p_cons 2.389286e-04   p_joint 1.833214e-03

Joint ci ratio: 5.456847e-02	ci left: 1.783067e-03	ci right 1.883444e-03	k: 5150	n:2810000
Cons ci ratio: 1.511992e-01	ci left: 2.210636e-04	ci right 2.575593e-04	k: 671	n:2810000
KS ci ratio: 7.653728e-04	ci left: 9.028965e-01	ci right 9.035881e-01	k: 2538112	n:2810000
COG2   2810000 perm   3347 sec   (839 perm/sec)   p_kst 9.032427e-01   p_cons 2.387900e-04   p_joint 1.832740e-03

Joint ci ratio: 5.445755e-02	ci left: 1.784090e-03	ci right 1.884313e-03	k: 5171	n:2820000
Cons ci ratio: 1.505286e-01	ci left: 2.223271e-04	ci right 2.588539e-04	k: 677	n:2820000
KS ci ratio: 7.640090e-04	ci left: 9.028983e-01	ci right 9.035888e-01	k: 2547148	n:2820000
COG2   2820000 perm   3369 sec   (837 perm/sec)   p_kst 9.032440e-01   p_cons 2.400709e-04   p_joint 1.833688e-03

Joint ci ratio: 5.436304e-02	ci left: 1.784059e-03	ci right 1.884102e-03	k: 5189	n:2830000
Cons ci ratio: 1.504177e-01	ci left: 2.218815e-04	ci right 2.583059e-04	k: 678	n:2830000
KS ci ratio: 7.627034e-04	ci left: 9.028885e-01	ci right 9.035778e-01	k: 2556151	n:2830000
COG2   2830000 perm   3391 sec   (834 perm/sec)   p_kst 9.032336e-01   p_cons 2.395760e-04   p_joint 1.833569e-03

Joint ci ratio: 5.429513e-02	ci left: 1.782293e-03	ci right 1.882108e-03	k: 5202	n:2840000
Cons ci ratio: 1.501967e-01	ci left: 2.217780e-04	ci right 2.581270e-04	k: 680	n:2840000
KS ci ratio: 7.614136e-04	ci left: 9.028767e-01	ci right 9.035647e-01	k: 2565148	n:2840000
COG2   2840000 perm   3413 sec   (832 perm/sec)   p_kst 9.032211e-01   p_cons 2.394366e-04   p_joint 1.831690e-03

Joint ci ratio: 5.418067e-02	ci left: 1.783654e-03	ci right 1.883328e-03	k: 5224	n:2850000
Cons ci ratio: 1.497575e-01	ci left: 2.223507e-04	ci right 2.586775e-04	k: 684	n:2850000
KS ci ratio: 7.600693e-04	ci left: 9.028790e-01	ci right 9.035658e-01	k: 2574185	n:2850000
COG2   2850000 perm   3435 sec   (830 perm/sec)   p_kst 9.032228e-01   p_cons 2.400000e-04   p_joint 1.832982e-03

Joint ci ratio: 5.413934e-02	ci left: 1.780177e-03	ci right 1.879578e-03	k: 5232	n:2860000
Cons ci ratio: 1.497575e-01	ci left: 2.215732e-04	ci right 2.577730e-04	k: 684	n:2860000
KS ci ratio: 7.588049e-04	ci left: 9.028644e-01	ci right 9.035501e-01	k: 2583174	n:2860000
COG2   2860000 perm   3456 sec   (827 perm/sec)   p_kst 9.032077e-01   p_cons 2.391608e-04   p_joint 1.829371e-03

Joint ci ratio: 5.403101e-02	ci left: 1.781192e-03	ci right 1.880445e-03	k: 5253	n:2870000
Cons ci ratio: 1.497576e-01	ci left: 2.208012e-04	ci right 2.568748e-04	k: 684	n:2870000
KS ci ratio: 7.573883e-04	ci left: 9.028866e-01	ci right 9.035711e-01	k: 2592268	n:2870000
COG2   2870000 perm   3478 sec   (825 perm/sec)   p_kst 9.032293e-01   p_cons 2.383275e-04   p_joint 1.830314e-03

Joint ci ratio: 5.391309e-02	ci left: 1.782886e-03	ci right 1.882009e-03	k: 5276	n:2880000
Cons ci ratio: 1.497577e-01	ci left: 2.200345e-04	ci right 2.559829e-04	k: 684	n:2880000
KS ci ratio: 7.560697e-04	ci left: 9.028878e-01	ci right 9.035711e-01	k: 2601302	n:2880000
COG2   2880000 perm   3500 sec   (823 perm/sec)   p_kst 9.032299e-01   p_cons 2.375000e-04   p_joint 1.831944e-03

Joint ci ratio: 5.382138e-02	ci left: 1.782861e-03	ci right 1.881809e-03	k: 5294	n:2890000
Cons ci ratio: 1.495395e-01	ci left: 2.199393e-04	ci right 2.558151e-04	k: 686	n:2890000
KS ci ratio: 7.547699e-04	ci left: 9.028862e-01	ci right 9.035683e-01	k: 2610328	n:2890000
COG2   2890000 perm   3523 sec   (820 perm/sec)   p_kst 9.032277e-01   p_cons 2.373702e-04   p_joint 1.831834e-03

Joint ci ratio: 5.372506e-02	ci left: 1.783177e-03	ci right 1.881960e-03	k: 5313	n:2900000
Cons ci ratio: 1.493223e-01	ci left: 2.198447e-04	ci right 2.556484e-04	k: 688	n:2900000
KS ci ratio: 7.534337e-04	ci left: 9.028947e-01	ci right 9.035755e-01	k: 2619383	n:2900000
COG2   2900000 perm   3545 sec   (818 perm/sec)   p_kst 9.032355e-01   p_cons 2.372414e-04   p_joint 1.832069e-03

Joint ci ratio: 5.359907e-02	ci left: 1.785525e-03	ci right 1.884199e-03	k: 5338	n:2910000
Cons ci ratio: 1.491061e-01	ci left: 2.197509e-04	ci right 2.554828e-04	k: 690	n:2910000
KS ci ratio: 7.520927e-04	ci left: 9.029058e-01	ci right 9.035855e-01	k: 2628446	n:2910000
COG2   2910000 perm   3569 sec   (815 perm/sec)   p_kst 9.032460e-01   p_cons 2.371134e-04   p_joint 1.834364e-03

Joint ci ratio: 5.504339e-02	ci left: 1.686171e-03	ci right 1.781945e-03	k: 5062	n:2920000
Cons ci ratio: 1.488908e-01	ci left: 2.196577e-04	ci right 2.553183e-04	k: 692	n:2920000
KS ci ratio: 7.508382e-04	ci left: 9.028984e-01	ci right 9.035769e-01	k: 2637455	n:2920000
COG2   2920000 perm   3591 sec   (813 perm/sec)   p_kst 9.032380e-01   p_cons 2.369863e-04   p_joint 1.733562e-03

Joint ci ratio: 5.581071e-02	ci left: 1.633968e-03	ci right 1.728113e-03	k: 4924	n:2930000
Cons ci ratio: 1.487835e-01	ci left: 2.192366e-04	ci right 2.548009e-04	k: 693	n:2930000
KS ci ratio: 7.494979e-04	ci left: 9.029125e-01	ci right 9.035898e-01	k: 2646527	n:2930000
COG2   2930000 perm   3614 sec   (811 perm/sec)   p_kst 9.032515e-01   p_cons 2.365188e-04   p_joint 1.680546e-03

Joint ci ratio: 5.572028e-02	ci left: 1.633777e-03	ci right 1.727753e-03	k: 4940	n:2940000
Cons ci ratio: 1.486765e-01	ci left: 2.188184e-04	ci right 2.542871e-04	k: 694	n:2940000
KS ci ratio: 7.482636e-04	ci left: 9.029033e-01	ci right 9.035795e-01	k: 2655531	n:2940000
COG2   2940000 perm   3636 sec   (808 perm/sec)   p_kst 9.032418e-01   p_cons 2.360544e-04   p_joint 1.680272e-03

Joint ci ratio: 5.564154e-02	ci left: 1.632918e-03	ci right 1.726708e-03	k: 4954	n:2950000
Cons ci ratio: 1.483566e-01	ci left: 2.190558e-04	ci right 2.544798e-04	k: 697	n:2950000
KS ci ratio: 7.469804e-04	ci left: 9.029072e-01	ci right 9.035822e-01	k: 2664573	n:2950000
COG2   2950000 perm   3659 sec   (806 perm/sec)   p_kst 9.032451e-01   p_cons 2.362712e-04   p_joint 1.679322e-03

Joint ci ratio: 5.554633e-02	ci left: 1.633065e-03	ci right 1.726698e-03	k: 4971	n:2960000
Cons ci ratio: 1.482505e-01	ci left: 2.186410e-04	ci right 2.539704e-04	k: 698	n:2960000
KS ci ratio: 7.456836e-04	ci left: 9.029157e-01	ci right 9.035896e-01	k: 2673629	n:2960000
COG2   2960000 perm   3681 sec   (804 perm/sec)   p_kst 9.032530e-01   p_cons 2.358108e-04   p_joint 1.679392e-03

Joint ci ratio: 5.544605e-02	ci left: 1.633543e-03	ci right 1.727029e-03	k: 4989	n:2970000
Cons ci ratio: 1.479334e-01	ci left: 2.188775e-04	ci right 2.541628e-04	k: 701	n:2970000
KS ci ratio: 7.444280e-04	ci left: 9.029161e-01	ci right 9.035888e-01	k: 2682661	n:2970000
COG2   2970000 perm   3703 sec   (802 perm/sec)   p_kst 9.032529e-01   p_cons 2.360269e-04   p_joint 1.679798e-03

Joint ci ratio: 5.302623e-02	ci left: 1.781990e-03	ci right 1.879385e-03	k: 5454	n:2980000
Cons ci ratio: 1.475136e-01	ci left: 2.194357e-04	ci right 2.547018e-04	k: 705	n:2980000
KS ci ratio: 7.431786e-04	ci left: 9.029165e-01	ci right 9.035881e-01	k: 2691693	n:2980000
COG2   2980000 perm   3726 sec   (800 perm/sec)   p_kst 9.032527e-01   p_cons 2.365772e-04   p_joint 1.830201e-03

Joint ci ratio: 5.373668e-02	ci left: 1.728841e-03	ci right 1.824636e-03	k: 5311	n:2990000
Cons ci ratio: 1.475137e-01	ci left: 2.187018e-04	ci right 2.538499e-04	k: 705	n:2990000
KS ci ratio: 7.419909e-04	ci left: 9.029038e-01	ci right 9.035743e-01	k: 2700686	n:2990000
COG2   2990000 perm   3749 sec   (798 perm/sec)   p_kst 9.032395e-01   p_cons 2.357860e-04   p_joint 1.776254e-03

Joint ci ratio: 5.290041e-02	ci left: 1.778662e-03	ci right 1.875637e-03	k: 5480	n:3000000
Cons ci ratio: 1.472013e-01	ci left: 2.189359e-04	ci right 2.540406e-04	k: 708	n:3000000
KS ci ratio: 7.408131e-04	ci left: 9.028902e-01	ci right 9.035597e-01	k: 2709676	n:3000000
COG2   3000000 perm   3772 sec   (795 perm/sec)   p_kst 9.032253e-01   p_cons 2.360000e-04   p_joint 1.826667e-03

Joint ci ratio: 5.284747e-02	ci left: 1.776359e-03	ci right 1.873108e-03	k: 5491	n:3010000
Cons ci ratio: 1.470976e-01	ci left: 2.185286e-04	ci right 2.535411e-04	k: 709	n:3010000
KS ci ratio: 7.396311e-04	ci left: 9.028791e-01	ci right 9.035474e-01	k: 2718673	n:3010000
COG2   3010000 perm   3795 sec   (793 perm/sec)   p_kst 9.032136e-01   p_cons 2.355482e-04   p_joint 1.824252e-03

Joint ci ratio: 5.278988e-02	ci left: 1.774398e-03	ci right 1.870932e-03	k: 5503	n:3020000
Cons ci ratio: 1.469942e-01	ci left: 2.181239e-04	ci right 2.530448e-04	k: 710	n:3020000
KS ci ratio: 7.383651e-04	ci left: 9.028892e-01	ci right 9.035564e-01	k: 2727734	n:3020000
COG2   3020000 perm   3819 sec   (791 perm/sec)   p_kst 9.032232e-01   p_cons 2.350993e-04   p_joint 1.822185e-03

Joint ci ratio: 5.268943e-02	ci left: 1.775381e-03	ci right 1.871779e-03	k: 5524	n:3030000
Cons ci ratio: 1.467879e-01	ci left: 2.180398e-04	ci right 2.528940e-04	k: 712	n:3030000
KS ci ratio: 7.371683e-04	ci left: 9.028844e-01	ci right 9.035505e-01	k: 2736750	n:3030000
COG2   3030000 perm   3842 sec   (789 perm/sec)   p_kst 9.032178e-01   p_cons 2.349835e-04   p_joint 1.823102e-03

Joint ci ratio: 5.259431e-02	ci left: 1.776034e-03	ci right 1.872288e-03	k: 5544	n:3040000
Cons ci ratio: 1.463778e-01	ci left: 2.185901e-04	ci right 2.534261e-04	k: 716	n:3040000
KS ci ratio: 7.359149e-04	ci left: 9.028944e-01	ci right 9.035594e-01	k: 2745811	n:3040000
COG2   3040000 perm   3866 sec   (786 perm/sec)   p_kst 9.032273e-01   p_cons 2.355263e-04   p_joint 1.823684e-03

Joint ci ratio: 5.122883e-02	ci left: 1.866973e-03	ci right 1.965452e-03	k: 5843	n:3050000
Cons ci ratio: 1.457691e-01	ci left: 2.197687e-04	ci right 2.546343e-04	k: 722	n:3050000
KS ci ratio: 7.346734e-04	ci left: 9.029031e-01	ci right 9.035670e-01	k: 2754868	n:3050000
COG2   3050000 perm   3889 sec   (784 perm/sec)   p_kst 9.032354e-01   p_cons 2.367213e-04   p_joint 1.915738e-03

Joint ci ratio: 5.111083e-02	ci left: 1.869583e-03	ci right 1.967965e-03	k: 5870	n:3060000
Cons ci ratio: 1.455679e-01	ci left: 2.196803e-04	ci right 2.544795e-04	k: 724	n:3060000
KS ci ratio: 7.334492e-04	ci left: 9.029091e-01	ci right 9.035719e-01	k: 2763917	n:3060000
COG2   3060000 perm   3912 sec   (782 perm/sec)   p_kst 9.032408e-01   p_cons 2.366013e-04   p_joint 1.918301e-03

Joint ci ratio: 5.103701e-02	ci left: 1.868960e-03	ci right 1.967163e-03	k: 5887	n:3070000
Cons ci ratio: 1.452676e-01	ci left: 2.199064e-04	ci right 2.546633e-04	k: 727	n:3070000
KS ci ratio: 7.322106e-04	ci left: 9.029199e-01	ci right 9.035816e-01	k: 2772981	n:3070000
COG2   3070000 perm   3936 sec   (780 perm/sec)   p_kst 9.032511e-01   p_cons 2.368078e-04   p_joint 1.917590e-03

Joint ci ratio: 5.091171e-02	ci left: 1.872187e-03	ci right 1.970311e-03	k: 5916	n:3080000
Cons ci ratio: 1.448701e-01	ci left: 2.204440e-04	ci right 2.551823e-04	k: 731	n:3080000
KS ci ratio: 7.310814e-04	ci left: 9.029060e-01	ci right 9.035666e-01	k: 2781969	n:3080000
COG2   3080000 perm   3959 sec   (778 perm/sec)   p_kst 9.032367e-01   p_cons 2.373377e-04   p_joint 1.920779e-03

Joint ci ratio: 5.086022e-02	ci left: 1.869963e-03	ci right 1.967868e-03	k: 5928	n:3090000
Cons ci ratio: 1.446726e-01	ci left: 2.203544e-04	ci right 2.550271e-04	k: 733	n:3090000
KS ci ratio: 7.298885e-04	ci left: 9.029087e-01	ci right 9.035682e-01	k: 2791008	n:3090000
COG2   3090000 perm   3982 sec   (776 perm/sec)   p_kst 9.032388e-01   p_cons 2.372168e-04   p_joint 1.918447e-03

Joint ci ratio: 5.077892e-02	ci left: 1.869982e-03	ci right 1.967727e-03	k: 5947	n:3100000
Cons ci ratio: 1.442800e-01	ci left: 2.208872e-04	ci right 2.555414e-04	k: 737	n:3100000
KS ci ratio: 7.287350e-04	ci left: 9.029033e-01	ci right 9.035618e-01	k: 2800022	n:3100000
COG2   3100000 perm   4006 sec   (774 perm/sec)   p_kst 9.032329e-01   p_cons 2.377419e-04   p_joint 1.918387e-03

Joint ci ratio: 5.070227e-02	ci left: 1.869683e-03	ci right 1.967261e-03	k: 5965	n:3110000
Cons ci ratio: 1.438905e-01	ci left: 2.214168e-04	ci right 2.560522e-04	k: 741	n:3110000
KS ci ratio: 7.275562e-04	ci left: 9.029053e-01	ci right 9.035628e-01	k: 2809059	n:3110000
COG2   3110000 perm   4030 sec   (772 perm/sec)   p_kst 9.032344e-01   p_cons 2.382637e-04   p_joint 1.918006e-03

Joint ci ratio: 5.062597e-02	ci left: 1.869387e-03	ci right 1.966798e-03	k: 5983	n:3120000
Cons ci ratio: 1.434081e-01	ci left: 2.222521e-04	ci right 2.568917e-04	k: 746	n:3120000
KS ci ratio: 7.262912e-04	ci left: 9.029295e-01	ci right 9.035858e-01	k: 2818165	n:3120000
COG2   3120000 perm   4053 sec   (770 perm/sec)   p_kst 9.032580e-01   p_cons 2.391026e-04   p_joint 1.917628e-03

Joint ci ratio: 5.053314e-02	ci left: 1.870354e-03	ci right 1.967632e-03	k: 6005	n:3130000
Cons ci ratio: 1.432165e-01	ci left: 2.221581e-04	ci right 2.567328e-04	k: 748	n:3130000
KS ci ratio: 7.251163e-04	ci left: 9.029333e-01	ci right 9.035886e-01	k: 2827208	n:3130000
COG2   3130000 perm   4077 sec   (768 perm/sec)   p_kst 9.032613e-01   p_cons 2.389776e-04   p_joint 1.918530e-03

Joint ci ratio: 5.047439e-02	ci left: 1.868800e-03	ci right 1.965880e-03	k: 6019	n:3140000
Cons ci ratio: 1.429306e-01	ci left: 2.223718e-04	ci right 2.569048e-04	k: 751	n:3140000
KS ci ratio: 7.239707e-04	ci left: 9.029314e-01	ci right 9.035857e-01	k: 2836233	n:3140000
COG2   3140000 perm   4102 sec   (766 perm/sec)   p_kst 9.032589e-01   p_cons 2.391720e-04   p_joint 1.916879e-03

Joint ci ratio: 5.034900e-02	ci left: 1.872271e-03	ci right 1.969283e-03	k: 6049	n:3150000
Cons ci ratio: 1.427409e-01	ci left: 2.222781e-04	ci right 2.567468e-04	k: 753	n:3150000
KS ci ratio: 7.228556e-04	ci left: 9.029235e-01	ci right 9.035767e-01	k: 2845239	n:3150000
COG2   3150000 perm   4126 sec   (764 perm/sec)   p_kst 9.032505e-01   p_cons 2.390476e-04   p_joint 1.920317e-03

Joint ci ratio: 5.025768e-02	ci left: 1.873221e-03	ci right 1.970101e-03	k: 6071	n:3160000
Cons ci ratio: 1.425519e-01	ci left: 2.221850e-04	ci right 2.565898e-04	k: 755	n:3160000
KS ci ratio: 7.217037e-04	ci left: 9.029258e-01	ci right 9.035779e-01	k: 2854277	n:3160000
COG2   3160000 perm   4150 sec   (761 perm/sec)   p_kst 9.032522e-01   p_cons 2.389241e-04   p_joint 1.921203e-03

Joint ci ratio: 5.019162e-02	ci left: 1.872295e-03	ci right 1.968997e-03	k: 6087	n:3170000
Cons ci ratio: 1.424578e-01	ci left: 2.217883e-04	ci right 2.561071e-04	k: 756	n:3170000
KS ci ratio: 7.205990e-04	ci left: 9.029179e-01	ci right 9.035691e-01	k: 2863283	n:3170000
COG2   3170000 perm   4174 sec   (759 perm/sec)   p_kst 9.032438e-01   p_cons 2.384858e-04   p_joint 1.920189e-03

Joint ci ratio: 5.010938e-02	ci left: 1.872618e-03	ci right 1.969173e-03	k: 6107	n:3180000
Cons ci ratio: 1.423638e-01	ci left: 2.213941e-04	ci right 2.556274e-04	k: 757	n:3180000
KS ci ratio: 7.194462e-04	ci left: 9.029230e-01	ci right 9.035731e-01	k: 2872330	n:3180000
COG2   3180000 perm   4199 sec   (757 perm/sec)   p_kst 9.032484e-01   p_cons 2.380503e-04   p_joint 1.920440e-03

Joint ci ratio: 5.002753e-02	ci left: 1.872939e-03	ci right 1.969348e-03	k: 6127	n:3190000
Cons ci ratio: 1.422700e-01	ci left: 2.210024e-04	ci right 2.551507e-04	k: 758	n:3190000
KS ci ratio: 7.182784e-04	ci left: 9.029331e-01	ci right 9.035822e-01	k: 2881393	n:3190000
COG2   3190000 perm   4223 sec   (755 perm/sec)   p_kst 9.032580e-01   p_cons 2.376176e-04   p_joint 1.920690e-03

Joint ci ratio: 4.509081e-02	ci left: 2.303114e-03	ci right 2.409665e-03	k: 7539	n:3200000
Cons ci ratio: 1.418966e-01	ci left: 2.215174e-04	ci right 2.556477e-04	k: 762	n:3200000
KS ci ratio: 7.172149e-04	ci left: 9.029190e-01	ci right 9.035671e-01	k: 2890379	n:3200000
COG2   3200000 perm   4248 sec   (753 perm/sec)   p_kst 9.032434e-01   p_cons 2.381250e-04   p_joint 2.355937e-03

Joint ci ratio: 4.498942e-02	ci left: 2.306412e-03	ci right 2.412869e-03	k: 7573	n:3210000
Cons ci ratio: 1.415261e-01	ci left: 2.220292e-04	ci right 2.561416e-04	k: 766	n:3210000
KS ci ratio: 7.160821e-04	ci left: 9.029231e-01	ci right 9.035702e-01	k: 2899423	n:3210000
COG2   3210000 perm   4273 sec   (751 perm/sec)   p_kst 9.032470e-01   p_cons 2.386293e-04   p_joint 2.359190e-03

Joint ci ratio: 4.491831e-02	ci left: 2.306619e-03	ci right 2.412913e-03	k: 7597	n:3220000
Cons ci ratio: 1.413419e-01	ci left: 2.219388e-04	ci right 2.559892e-04	k: 768	n:3220000
KS ci ratio: 7.148899e-04	ci left: 9.029431e-01	ci right 9.035891e-01	k: 2908518	n:3220000
COG2   3220000 perm   4297 sec   (749 perm/sec)   p_kst 9.032665e-01   p_cons 2.385093e-04   p_joint 2.359317e-03

Joint ci ratio: 4.487409e-02	ci left: 2.304069e-03	ci right 2.410139e-03	k: 7612	n:3230000
Cons ci ratio: 1.410670e-01	ci left: 2.221477e-04	ci right 2.561582e-04	k: 771	n:3230000
KS ci ratio: 7.137895e-04	ci left: 9.029418e-01	ci right 9.035869e-01	k: 2917545	n:3230000
COG2   3230000 perm   4321 sec   (747 perm/sec)   p_kst 9.032647e-01   p_cons 2.386997e-04   p_joint 2.356656e-03

Joint ci ratio: 4.481529e-02	ci left: 2.303061e-03	ci right 2.408942e-03	k: 7632	n:3240000
Cons ci ratio: 1.409758e-01	ci left: 2.217598e-04	ci right 2.556871e-04	k: 772	n:3240000
KS ci ratio: 7.126892e-04	ci left: 9.029418e-01	ci right 9.035859e-01	k: 2926576	n:3240000
COG2   3240000 perm   4346 sec   (745 perm/sec)   p_kst 9.032642e-01   p_cons 2.382716e-04   p_joint 2.355556e-03

Joint ci ratio: 4.474207e-02	ci left: 2.303581e-03	ci right 2.409308e-03	k: 7657	n:3250000
Cons ci ratio: 1.404317e-01	ci left: 2.228586e-04	ci right 2.568115e-04	k: 778	n:3250000
KS ci ratio: 7.115602e-04	ci left: 9.029501e-01	ci right 9.035932e-01	k: 2935634	n:3250000
COG2   3250000 perm   4371 sec   (744 perm/sec)   p_kst 9.032720e-01   p_cons 2.393846e-04   p_joint 2.356000e-03

Joint ci ratio: 4.468086e-02	ci left: 2.302885e-03	ci right 2.408432e-03	k: 7678	n:3260000
Cons ci ratio: 1.401621e-01	ci left: 2.230629e-04	ci right 2.569762e-04	k: 781	n:3260000
KS ci ratio: 7.104489e-04	ci left: 9.029553e-01	ci right 9.035973e-01	k: 2944682	n:3260000
COG2   3260000 perm   4395 sec   (742 perm/sec)   p_kst 9.032767e-01   p_cons 2.395706e-04   p_joint 2.355215e-03

Joint ci ratio: 4.461410e-02	ci left: 2.302797e-03	ci right 2.408179e-03	k: 7701	n:3270000
Cons ci ratio: 1.398049e-01	ci left: 2.235612e-04	ci right 2.574564e-04	k: 785	n:3270000
KS ci ratio: 7.093106e-04	ci left: 9.029684e-01	ci right 9.036094e-01	k: 2953756	n:3270000
COG2   3270000 perm   4420 sec   (740 perm/sec)   p_kst 9.032893e-01   p_cons 2.400612e-04   p_joint 2.355046e-03

Joint ci ratio: 4.454764e-02	ci left: 2.302711e-03	ci right 2.407927e-03	k: 7724	n:3280000
Cons ci ratio: 1.392743e-01	ci left: 2.246450e-04	ci right 2.585646e-04	k: 791	n:3280000
KS ci ratio: 7.082580e-04	ci left: 9.029616e-01	ci right 9.036017e-01	k: 2962765	n:3280000
COG2   3280000 perm   4445 sec   (738 perm/sec)   p_kst 9.032820e-01   p_cons 2.411585e-04   p_joint 2.354878e-03

Joint ci ratio: 4.446710e-02	ci left: 2.304128e-03	ci right 2.409213e-03	k: 7752	n:3290000
Cons ci ratio: 1.390988e-01	ci left: 2.245490e-04	ci right 2.584077e-04	k: 793	n:3290000
KS ci ratio: 7.071929e-04	ci left: 9.029591e-01	ci right 9.035982e-01	k: 2971788	n:3290000
COG2   3290000 perm   4469 sec   (736 perm/sec)   p_kst 9.032790e-01   p_cons 2.410334e-04   p_joint 2.356231e-03

Joint ci ratio: 4.438985e-02	ci left: 2.305236e-03	ci right 2.410185e-03	k: 7779	n:3300000
Cons ci ratio: 1.389239e-01	ci left: 2.244535e-04	ci right 2.582518e-04	k: 795	n:3300000
KS ci ratio: 7.061375e-04	ci left: 9.029554e-01	ci right 9.035936e-01	k: 2980807	n:3300000
COG2   3300000 perm   4494 sec   (734 perm/sec)   p_kst 9.032748e-01   p_cons 2.409091e-04   p_joint 2.357273e-03

Joint ci ratio: 4.432438e-02	ci left: 2.305143e-03	ci right 2.409930e-03	k: 7802	n:3310000
Cons ci ratio: 1.387497e-01	ci left: 2.243586e-04	ci right 2.580968e-04	k: 797	n:3310000
KS ci ratio: 7.050807e-04	ci left: 9.029533e-01	ci right 9.035904e-01	k: 2989831	n:3310000
COG2   3310000 perm   4520 sec   (732 perm/sec)   p_kst 9.032722e-01   p_cons 2.407855e-04   p_joint 2.357100e-03

Joint ci ratio: 4.426771e-02	ci left: 2.304158e-03	ci right 2.408762e-03	k: 7822	n:3320000
Cons ci ratio: 1.386629e-01	ci left: 2.239736e-04	ci right 2.576311e-04	k: 798	n:3320000
KS ci ratio: 7.039885e-04	ci left: 9.029611e-01	ci right 9.035973e-01	k: 2998888	n:3320000
COG2   3320000 perm   4544 sec   (731 perm/sec)   p_kst 9.032795e-01   p_cons 2.403614e-04   p_joint 2.356024e-03

Joint ci ratio: 4.420561e-02	ci left: 2.303772e-03	ci right 2.408208e-03	k: 7844	n:3330000
Cons ci ratio: 1.385763e-01	ci left: 2.235909e-04	ci right 2.571681e-04	k: 799	n:3330000
KS ci ratio: 7.029824e-04	ci left: 9.029487e-01	ci right 9.035840e-01	k: 3007878	n:3330000
COG2   3330000 perm   4570 sec   (729 perm/sec)   p_kst 9.032667e-01   p_cons 2.399399e-04   p_joint 2.355556e-03

Joint ci ratio: 4.416065e-02	ci left: 2.301612e-03	ci right 2.405841e-03	k: 7860	n:3340000
Cons ci ratio: 1.384034e-01	ci left: 2.234995e-04	ci right 2.570177e-04	k: 801	n:3340000
KS ci ratio: 7.018855e-04	ci left: 9.029601e-01	ci right 9.035943e-01	k: 3016947	n:3340000
COG2   3340000 perm   4595 sec   (727 perm/sec)   p_kst 9.032775e-01   p_cons 2.398204e-04   p_joint 2.353293e-03

Joint ci ratio: 4.409058e-02	ci left: 2.302122e-03	ci right 2.406204e-03	k: 7885	n:3350000
Cons ci ratio: 1.382311e-01	ci left: 2.234087e-04	ci right 2.568681e-04	k: 803	n:3350000
KS ci ratio: 7.008477e-04	ci left: 9.029579e-01	ci right 9.035912e-01	k: 3025971	n:3350000
COG2   3350000 perm   4621 sec   (725 perm/sec)   p_kst 9.032749e-01   p_cons 2.397015e-04   p_joint 2.353731e-03

Joint ci ratio: 4.404597e-02	ci left: 2.299979e-03	ci right 2.403857e-03	k: 7901	n:3360000
Cons ci ratio: 1.382312e-01	ci left: 2.227438e-04	ci right 2.561036e-04	k: 803	n:3360000
KS ci ratio: 6.997882e-04	ci left: 9.029623e-01	ci right 9.035947e-01	k: 3035017	n:3360000
COG2   3360000 perm   4647 sec   (723 perm/sec)   p_kst 9.032789e-01   p_cons 2.389881e-04   p_joint 2.351488e-03

Joint ci ratio: 4.397367e-02	ci left: 2.300785e-03	ci right 2.404524e-03	k: 7927	n:3370000
Cons ci ratio: 1.382312e-01	ci left: 2.220828e-04	ci right 2.553437e-04	k: 803	n:3370000
KS ci ratio: 6.987572e-04	ci left: 9.029608e-01	ci right 9.035922e-01	k: 3044043	n:3370000
COG2   3370000 perm   4672 sec   (721 perm/sec)   p_kst 9.032769e-01   p_cons 2.382789e-04   p_joint 2.352226e-03

Joint ci ratio: 4.391833e-02	ci left: 2.299830e-03	ci right 2.403392e-03	k: 7947	n:3380000
Cons ci ratio: 1.382313e-01	ci left: 2.214258e-04	ci right 2.545882e-04	k: 803	n:3380000
KS ci ratio: 6.977130e-04	ci left: 9.029637e-01	ci right 9.035942e-01	k: 3053084	n:3380000
COG2   3380000 perm   4698 sec   (719 perm/sec)   p_kst 9.032793e-01   p_cons 2.375740e-04   p_joint 2.351183e-03

Joint ci ratio: 4.951497e-02	ci left: 1.799728e-03	ci right 1.891392e-03	k: 6255	n:3390000
Cons ci ratio: 1.378034e-01	ci left: 2.221966e-04	ci right 2.553631e-04	k: 808	n:3390000
KS ci ratio: 6.972415e-04	ci left: 9.028239e-01	ci right 9.034539e-01	k: 3061642	n:3390000
COG2   3390000 perm   4723 sec   (718 perm/sec)   p_kst 9.031392e-01   p_cons 2.383481e-04   p_joint 1.845133e-03

Joint ci ratio: 4.944390e-02	ci left: 1.799663e-03	ci right 1.891189e-03	k: 6273	n:3400000
Cons ci ratio: 1.376334e-01	ci left: 2.221110e-04	ci right 2.552205e-04	k: 810	n:3400000
KS ci ratio: 6.962147e-04	ci left: 9.028245e-01	ci right 9.034536e-01	k: 3070674	n:3400000
COG2   3400000 perm   4749 sec   (716 perm/sec)   p_kst 9.031394e-01   p_cons 2.382353e-04   p_joint 1.845000e-03

Joint ci ratio: 4.934563e-02	ci left: 1.801626e-03	ci right 1.893065e-03	k: 6298	n:3410000
Cons ci ratio: 1.373795e-01	ci left: 2.223092e-04	ci right 2.553820e-04	k: 813	n:3410000
KS ci ratio: 6.951621e-04	ci left: 9.028328e-01	ci right 9.034609e-01	k: 3079732	n:3410000
COG2   3410000 perm   4774 sec   (714 perm/sec)   p_kst 9.031472e-01   p_cons 2.384164e-04   p_joint 1.846921e-03

Joint ci ratio: 4.929092e-02	ci left: 1.800401e-03	ci right 1.891674e-03	k: 6312	n:3420000
Cons ci ratio: 1.371270e-01	ci left: 2.225062e-04	ci right 2.555426e-04	k: 816	n:3420000
KS ci ratio: 6.941629e-04	ci left: 9.028287e-01	ci right 9.034560e-01	k: 3088748	n:3420000
COG2   3420000 perm   4800 sec   (713 perm/sec)   p_kst 9.031427e-01   p_cons 2.385965e-04   p_joint 1.845614e-03

Joint ci ratio: 4.922080e-02	ci left: 1.800335e-03	ci right 1.891471e-03	k: 6330	n:3430000
Cons ci ratio: 1.371271e-01	ci left: 2.218575e-04	ci right 2.547976e-04	k: 816	n:3430000
KS ci ratio: 6.931288e-04	ci left: 9.028346e-01	ci right 9.034609e-01	k: 3097798	n:3430000
COG2   3430000 perm   4826 sec   (711 perm/sec)   p_kst 9.031481e-01   p_cons 2.379009e-04   p_joint 1.845481e-03

Joint ci ratio: 4.917427e-02	ci left: 1.798547e-03	ci right 1.889504e-03	k: 6342	n:3440000
Cons ci ratio: 1.369596e-01	ci left: 2.217741e-04	ci right 2.546582e-04	k: 818	n:3440000
KS ci ratio: 6.921051e-04	ci left: 9.028390e-01	ci right 9.034644e-01	k: 3106843	n:3440000
COG2   3440000 perm   4852 sec   (709 perm/sec)   p_kst 9.031520e-01   p_cons 2.377907e-04   p_joint 1.843605e-03

Joint ci ratio: 4.911625e-02	ci left: 1.797629e-03	ci right 1.888428e-03	k: 6357	n:3450000
Cons ci ratio: 1.367094e-01	ci left: 2.219710e-04	ci right 2.548194e-04	k: 821	n:3450000
KS ci ratio: 6.911019e-04	ci left: 9.028393e-01	ci right 9.034638e-01	k: 3115874	n:3450000
COG2   3450000 perm   4878 sec   (707 perm/sec)   p_kst 9.031519e-01   p_cons 2.379710e-04   p_joint 1.842609e-03

Joint ci ratio: 4.905073e-02	ci left: 1.797286e-03	ci right 1.887944e-03	k: 6374	n:3460000
Cons ci ratio: 1.367094e-01	ci left: 2.213295e-04	ci right 2.540829e-04	k: 821	n:3460000
KS ci ratio: 6.900734e-04	ci left: 9.028471e-01	ci right 9.034707e-01	k: 3124931	n:3460000
COG2   3460000 perm   4904 sec   (706 perm/sec)   p_kst 9.031592e-01   p_cons 2.372832e-04   p_joint 1.842197e-03

Joint ci ratio: 4.900083e-02	ci left: 1.795807e-03	ci right 1.886296e-03	k: 6387	n:3470000
Cons ci ratio: 1.366264e-01	ci left: 2.209700e-04	ci right 2.536487e-04	k: 822	n:3470000
KS ci ratio: 6.890564e-04	ci left: 9.028532e-01	ci right 9.034758e-01	k: 3133982	n:3470000
COG2   3470000 perm   4930 sec   (704 perm/sec)   p_kst 9.031648e-01   p_cons 2.368876e-04   p_joint 1.840634e-03

Joint ci ratio: 4.889754e-02	ci left: 1.798310e-03	ci right 1.888729e-03	k: 6414	n:3480000
Cons ci ratio: 1.363780e-01	ci left: 2.211676e-04	ci right 2.538113e-04	k: 825	n:3480000
KS ci ratio: 6.880720e-04	ci left: 9.028520e-01	ci right 9.034737e-01	k: 3143008	n:3480000
COG2   3480000 perm   4956 sec   (702 perm/sec)   p_kst 9.031632e-01   p_cons 2.370690e-04   p_joint 1.843103e-03

Joint ci ratio: 4.884050e-02	ci left: 1.797403e-03	ci right 1.887667e-03	k: 6429	n:3490000
Cons ci ratio: 1.361310e-01	ci left: 2.213642e-04	ci right 2.539730e-04	k: 828	n:3490000
KS ci ratio: 6.870626e-04	ci left: 9.028583e-01	ci right 9.034791e-01	k: 3152060	n:3490000
COG2   3490000 perm   4982 sec   (701 perm/sec)   p_kst 9.031691e-01   p_cons 2.372493e-04   p_joint 1.842120e-03

Joint ci ratio: 4.878744e-02	ci left: 1.796219e-03	ci right 1.886323e-03	k: 6443	n:3500000
Cons ci ratio: 1.358854e-01	ci left: 2.215597e-04	ci right 2.541336e-04	k: 831	n:3500000
KS ci ratio: 6.861069e-04	ci left: 9.028520e-01	ci right 9.034719e-01	k: 3161068	n:3500000
COG2   3500000 perm   5008 sec   (699 perm/sec)   p_kst 9.031623e-01   p_cons 2.374286e-04   p_joint 1.840857e-03

Joint ci ratio: 4.872323e-02	ci left: 1.795886e-03	ci right 1.885851e-03	k: 6460	n:3510000
Cons ci ratio: 1.358038e-01	ci left: 2.212037e-04	ci right 2.537042e-04	k: 832	n:3510000
KS ci ratio: 6.852233e-04	ci left: 9.028283e-01	ci right 9.034474e-01	k: 3170015	n:3510000
COG2   3510000 perm   5034 sec   (697 perm/sec)   p_kst 9.031382e-01   p_cons 2.370370e-04   p_joint 1.840456e-03

Joint ci ratio: 4.327575e-02	ci left: 2.275235e-03	ci right 2.376154e-03	k: 8185	n:3520000
Cons ci ratio: 1.353980e-01	ci left: 2.219476e-04	ci right 2.544520e-04	k: 837	n:3520000
KS ci ratio: 6.842408e-04	ci left: 9.028309e-01	ci right 9.034491e-01	k: 3179054	n:3520000
COG2   3520000 perm   5060 sec   (696 perm/sec)   p_kst 9.031403e-01   p_cons 2.377841e-04   p_joint 2.325284e-03

Joint ci ratio: 4.320453e-02	ci left: 2.276356e-03	ci right 2.377154e-03	k: 8212	n:3530000
Cons ci ratio: 1.349958e-01	ci left: 2.226874e-04	ci right 2.551955e-04	k: 842	n:3530000
KS ci ratio: 6.832791e-04	ci left: 9.028292e-01	ci right 9.034466e-01	k: 3188078	n:3530000
COG2   3530000 perm   5087 sec   (694 perm/sec)   p_kst 9.031382e-01   p_cons 2.385269e-04   p_joint 2.326346e-03

Joint ci ratio: 4.315467e-02	ci left: 2.275235e-03	ci right 2.375864e-03	k: 8231	n:3540000
Cons ci ratio: 1.349159e-01	ci left: 2.223312e-04	ci right 2.547666e-04	k: 843	n:3540000
KS ci ratio: 6.823600e-04	ci left: 9.028177e-01	ci right 9.034342e-01	k: 3197067	n:3540000
COG2   3540000 perm   5114 sec   (692 perm/sec)   p_kst 9.031263e-01   p_cons 2.381356e-04   p_joint 2.325141e-03

Joint ci ratio: 4.311022e-02	ci left: 2.273563e-03	ci right 2.374012e-03	k: 8248	n:3550000
Cons ci ratio: 1.348360e-01	ci left: 2.219771e-04	ci right 2.543402e-04	k: 844	n:3550000
KS ci ratio: 6.814227e-04	ci left: 9.028118e-01	ci right 9.034275e-01	k: 3206076	n:3550000
COG2   3550000 perm   5141 sec   (691 perm/sec)   p_kst 9.031200e-01   p_cons 2.377465e-04   p_joint 2.323380e-03

Joint ci ratio: 4.305285e-02	ci left: 2.273290e-03	ci right 2.373590e-03	k: 8270	n:3560000
Cons ci ratio: 1.347563e-01	ci left: 2.216250e-04	ci right 2.539161e-04	k: 845	n:3560000
KS ci ratio: 6.804597e-04	ci left: 9.028136e-01	ci right 9.034284e-01	k: 3215112	n:3560000
COG2   3560000 perm   5168 sec   (689 perm/sec)   p_kst 9.031213e-01   p_cons 2.373596e-04   p_joint 2.323034e-03

Joint ci ratio: 4.299571e-02	ci left: 2.273018e-03	ci right 2.373170e-03	k: 8292	n:3570000
Cons ci ratio: 1.346768e-01	ci left: 2.212749e-04	ci right 2.534944e-04	k: 846	n:3570000
KS ci ratio: 6.795030e-04	ci left: 9.028148e-01	ci right 9.034288e-01	k: 3224146	n:3570000
COG2   3570000 perm   5195 sec   (687 perm/sec)   p_kst 9.031221e-01   p_cons 2.369748e-04   p_joint 2.322689e-03

Joint ci ratio: 4.292587e-02	ci left: 2.274130e-03	ci right 2.374164e-03	k: 8319	n:3580000
Cons ci ratio: 1.345974e-01	ci left: 2.209267e-04	ci right 2.530751e-04	k: 847	n:3580000
KS ci ratio: 6.785720e-04	ci left: 9.028104e-01	ci right 9.034235e-01	k: 3233160	n:3580000
COG2   3580000 perm   5223 sec   (685 perm/sec)   p_kst 9.031173e-01   p_cons 2.365922e-04   p_joint 2.323743e-03

Joint ci ratio: 4.286666e-02	ci left: 2.274133e-03	ci right 2.374026e-03	k: 8342	n:3590000
Cons ci ratio: 1.345181e-01	ci left: 2.205805e-04	ci right 2.526580e-04	k: 848	n:3590000
KS ci ratio: 6.776135e-04	ci left: 9.028142e-01	ci right 9.034264e-01	k: 3242203	n:3590000
COG2   3590000 perm   5249 sec   (684 perm/sec)   p_kst 9.031206e-01   p_cons 2.362117e-04   p_joint 2.323677e-03

Joint ci ratio: 4.278976e-02	ci left: 2.276060e-03	ci right 2.375854e-03	k: 8372	n:3600000
Cons ci ratio: 1.341237e-01	ci left: 2.213100e-04	ci right 2.533917e-04	k: 853	n:3600000
KS ci ratio: 6.767181e-04	ci left: 9.028026e-01	ci right 9.034140e-01	k: 3251191	n:3600000
COG2   3600000 perm   5276 sec   (682 perm/sec)   p_kst 9.031086e-01   p_cons 2.369444e-04   p_joint 2.325556e-03

Joint ci ratio: 4.272601e-02	ci left: 2.276607e-03	ci right 2.376272e-03	k: 8397	n:3610000
Cons ci ratio: 1.337327e-01	ci left: 2.220356e-04	ci right 2.541212e-04	k: 858	n:3610000
KS ci ratio: 6.757706e-04	ci left: 9.028055e-01	ci right 9.034160e-01	k: 3260231	n:3610000
COG2   3610000 perm   5303 sec   (681 perm/sec)   p_kst 9.031111e-01   p_cons 2.376731e-04   p_joint 2.326039e-03

Joint ci ratio: 4.266762e-02	ci left: 2.276603e-03	ci right 2.376129e-03	k: 8420	n:3620000
Cons ci ratio: 1.334998e-01	ci left: 2.222233e-04	ci right 2.542757e-04	k: 861	n:3620000
KS ci ratio: 6.748314e-04	ci left: 9.028073e-01	ci right 9.034170e-01	k: 3269267	n:3620000
COG2   3620000 perm   5330 sec   (679 perm/sec)   p_kst 9.031124e-01   p_cons 2.378453e-04   p_joint 2.325967e-03

Joint ci ratio: 4.260442e-02	ci left: 2.277145e-03	ci right 2.376544e-03	k: 8445	n:3630000
Cons ci ratio: 1.328082e-01	ci left: 2.240079e-04	ci right 2.561370e-04	k: 870	n:3630000
KS ci ratio: 6.738982e-04	ci left: 9.028085e-01	ci right 9.034173e-01	k: 3278301	n:3630000
COG2   3630000 perm   5358 sec   (677 perm/sec)   p_kst 9.031132e-01   p_cons 2.396694e-04   p_joint 2.326446e-03

Joint ci ratio: 4.253143e-02	ci left: 2.278772e-03	ci right 2.378067e-03	k: 8474	n:3640000
Cons ci ratio: 1.325042e-01	ci left: 2.244549e-04	ci right 2.565687e-04	k: 874	n:3640000
KS ci ratio: 6.730142e-04	ci left: 9.027978e-01	ci right 9.034059e-01	k: 3287292	n:3640000
COG2   3640000 perm   5386 sec   (676 perm/sec)   p_kst 9.031022e-01   p_cons 2.401099e-04   p_joint 2.328022e-03

Joint ci ratio: 4.247133e-02	ci left: 2.279034e-03	ci right 2.378196e-03	k: 8498	n:3650000
Cons ci ratio: 1.322024e-01	ci left: 2.248996e-04	ci right 2.569979e-04	k: 878	n:3650000
KS ci ratio: 6.721054e-04	ci left: 9.027947e-01	ci right 9.034019e-01	k: 3296310	n:3650000
COG2   3650000 perm   5413 sec   (674 perm/sec)   p_kst 9.030986e-01   p_cons 2.405479e-04   p_joint 2.328219e-03

Joint ci ratio: 4.240650e-02	ci left: 2.279836e-03	ci right 2.378878e-03	k: 8524	n:3660000
Cons ci ratio: 1.320522e-01	ci left: 2.248135e-04	ci right 2.568603e-04	k: 880	n:3660000
KS ci ratio: 6.711111e-04	ci left: 9.028148e-01	ci right 9.034212e-01	k: 3305413	n:3660000
COG2   3660000 perm   5441 sec   (673 perm/sec)   p_kst 9.031183e-01   p_cons 2.404372e-04   p_joint 2.328962e-03

Joint ci ratio: 4.233700e-02	ci left: 2.281172e-03	ci right 2.380106e-03	k: 8552	n:3670000
Cons ci ratio: 1.318280e-01	ci left: 2.249913e-04	ci right 2.570048e-04	k: 883	n:3670000
KS ci ratio: 6.702538e-04	ci left: 9.028002e-01	ci right 9.034057e-01	k: 3314389	n:3670000
COG2   3670000 perm   5469 sec   (671 perm/sec)   p_kst 9.031033e-01   p_cons 2.405995e-04   p_joint 2.330245e-03

Joint ci ratio: 4.229255e-02	ci left: 2.279813e-03	ci right 2.378581e-03	k: 8570	n:3680000
Cons ci ratio: 1.318280e-01	ci left: 2.243800e-04	ci right 2.563064e-04	k: 883	n:3680000
KS ci ratio: 6.693654e-04	ci left: 9.027946e-01	ci right 9.033993e-01	k: 3323398	n:3680000
COG2   3680000 perm   5496 sec   (670 perm/sec)   p_kst 9.030973e-01   p_cons 2.399457e-04   p_joint 2.328804e-03

Joint ci ratio: 4.223100e-02	ci left: 2.280338e-03	ci right 2.378982e-03	k: 8595	n:3690000
Cons ci ratio: 1.317535e-01	ci left: 2.240339e-04	ci right 2.558917e-04	k: 884	n:3690000
KS ci ratio: 6.684691e-04	ci left: 9.027920e-01	ci right 9.033960e-01	k: 3332418	n:3690000
COG2   3690000 perm   5524 sec   (668 perm/sec)   p_kst 9.030943e-01   p_cons 2.395664e-04   p_joint 2.329268e-03

Joint ci ratio: 4.216971e-02	ci left: 2.280860e-03	ci right 2.379380e-03	k: 8620	n:3700000
Cons ci ratio: 1.315308e-01	ci left: 2.242126e-04	ci right 2.560376e-04	k: 887	n:3700000
KS ci ratio: 6.675342e-04	ci left: 9.028006e-01	ci right 9.034037e-01	k: 3341479	n:3700000
COG2   3700000 perm   5551 sec   (667 perm/sec)   p_kst 9.031024e-01   p_cons 2.397297e-04   p_joint 2.329730e-03

Joint ci ratio: 4.211357e-02	ci left: 2.280847e-03	ci right 2.379232e-03	k: 8643	n:3710000
Cons ci ratio: 1.313092e-01	ci left: 2.243903e-04	ci right 2.561827e-04	k: 890	n:3710000
KS ci ratio: 6.666298e-04	ci left: 9.028020e-01	ci right 9.034043e-01	k: 3350514	n:3710000
COG2   3710000 perm   5579 sec   (665 perm/sec)   p_kst 9.031035e-01   p_cons 2.398922e-04   p_joint 2.329650e-03

Joint ci ratio: 4.205766e-02	ci left: 2.280833e-03	ci right 2.379084e-03	k: 8666	n:3720000
Cons ci ratio: 1.312356e-01	ci left: 2.240470e-04	ci right 2.557717e-04	k: 891	n:3720000
KS ci ratio: 6.657251e-04	ci left: 9.028046e-01	ci right 9.034061e-01	k: 3359553	n:3720000
COG2   3720000 perm   5607 sec   (664 perm/sec)   p_kst 9.031056e-01   p_cons 2.395161e-04   p_joint 2.329570e-03

Joint ci ratio: 4.199712e-02	ci left: 2.281350e-03	ci right 2.379478e-03	k: 8691	n:3730000
Cons ci ratio: 1.309423e-01	ci left: 2.244836e-04	ci right 2.561935e-04	k: 895	n:3730000
KS ci ratio: 6.648861e-04	ci left: 9.027908e-01	ci right 9.033915e-01	k: 3368531	n:3730000
COG2   3730000 perm   5635 sec   (662 perm/sec)   p_kst 9.030914e-01   p_cons 2.399464e-04   p_joint 2.330027e-03

Joint ci ratio: 4.194891e-02	ci left: 2.280542e-03	ci right 2.378520e-03	k: 8711	n:3740000
Cons ci ratio: 1.308693e-01	ci left: 2.241420e-04	ci right 2.557846e-04	k: 896	n:3740000
KS ci ratio: 6.639580e-04	ci left: 9.028014e-01	ci right 9.034012e-01	k: 3377600	n:3740000
COG2   3740000 perm   5662 sec   (660 perm/sec)   p_kst 9.031016e-01   p_cons 2.395722e-04   p_joint 2.329144e-03

Joint ci ratio: 4.190808e-02	ci left: 2.278946e-03	ci right 2.376758e-03	k: 8728	n:3750000
Cons ci ratio: 1.306510e-01	ci left: 2.243181e-04	ci right 2.559287e-04	k: 899	n:3750000
KS ci ratio: 6.630045e-04	ci left: 9.028196e-01	ci right 9.034187e-01	k: 3386698	n:3750000
COG2   3750000 perm   5691 sec   (659 perm/sec)   p_kst 9.031195e-01   p_cons 2.397333e-04   p_joint 2.327467e-03

Joint ci ratio: 4.187936e-02	ci left: 2.276043e-03	ci right 2.373662e-03	k: 8740	n:3760000
Cons ci ratio: 1.305785e-01	ci left: 2.239788e-04	ci right 2.555226e-04	k: 900	n:3760000
KS ci ratio: 6.621013e-04	ci left: 9.028256e-01	ci right 9.034238e-01	k: 3395750	n:3760000
COG2   3760000 perm   5719 sec   (657 perm/sec)   p_kst 9.031250e-01   p_cons 2.393617e-04   p_joint 2.324468e-03

Joint ci ratio: 4.181959e-02	ci left: 2.276568e-03	ci right 2.374066e-03	k: 8765	n:3770000
Cons ci ratio: 1.302176e-01	ci left: 2.246677e-04	ci right 2.562144e-04	k: 905	n:3770000
KS ci ratio: 6.612138e-04	ci left: 9.028283e-01	ci right 9.034257e-01	k: 3404790	n:3770000
COG2   3770000 perm   5747 sec   (656 perm/sec)   p_kst 9.031273e-01   p_cons 2.400531e-04   p_joint 2.324934e-03

Joint ci ratio: 4.174818e-02	ci left: 2.278399e-03	ci right 2.375805e-03	k: 8795	n:3780000
Cons ci ratio: 1.301458e-01	ci left: 2.243293e-04	ci right 2.558097e-04	k: 906	n:3780000
KS ci ratio: 6.603858e-04	ci left: 9.028162e-01	ci right 9.034128e-01	k: 3413774	n:3780000
COG2   3780000 perm   5775 sec   (654 perm/sec)   p_kst 9.031148e-01   p_cons 2.396825e-04   p_joint 2.326720e-03

Joint ci ratio: 4.169607e-02	ci left: 2.278131e-03	ci right 2.375402e-03	k: 8817	n:3790000
Cons ci ratio: 1.300742e-01	ci left: 2.239926e-04	ci right 2.554072e-04	k: 907	n:3790000
KS ci ratio: 6.595112e-04	ci left: 9.028173e-01	ci right 9.034132e-01	k: 3422808	n:3790000
COG2   3790000 perm   5805 sec   (653 perm/sec)   p_kst 9.031156e-01   p_cons 2.393140e-04   p_joint 2.326385e-03

Joint ci ratio: 4.164652e-02	ci left: 2.277605e-03	ci right 2.374735e-03	k: 8838	n:3800000
Cons ci ratio: 1.299312e-01	ci left: 2.239124e-04	ci right 2.552785e-04	k: 909	n:3800000
KS ci ratio: 6.586757e-04	ci left: 9.028090e-01	ci right 9.034041e-01	k: 3431806	n:3800000
COG2   3800000 perm   5833 sec   (652 perm/sec)   p_kst 9.031068e-01   p_cons 2.392105e-04   p_joint 2.325789e-03

Joint ci ratio: 4.159009e-02	ci left: 2.277861e-03	ci right 2.374867e-03	k: 8862	n:3810000
Cons ci ratio: 1.297886e-01	ci left: 2.238326e-04	ci right 2.551504e-04	k: 911	n:3810000
KS ci ratio: 6.577871e-04	ci left: 9.028157e-01	ci right 9.034100e-01	k: 3440861	n:3810000
COG2   3810000 perm   5861 sec   (650 perm/sec)   p_kst 9.031131e-01   p_cons 2.391076e-04   p_joint 2.325984e-03

Joint ci ratio: 4.152687e-02	ci left: 2.278892e-03	ci right 2.375791e-03	k: 8889	n:3820000
Cons ci ratio: 1.294342e-01	ci left: 2.245131e-04	ci right 2.558338e-04	k: 916	n:3820000
KS ci ratio: 6.569571e-04	ci left: 9.028076e-01	ci right 9.034012e-01	k: 3449860	n:3820000
COG2   3820000 perm   5889 sec   (649 perm/sec)   p_kst 9.031047e-01   p_cons 2.397906e-04   p_joint 2.326963e-03

Joint ci ratio: 4.145927e-02	ci left: 2.280436e-03	ci right 2.377238e-03	k: 8918	n:3830000
Cons ci ratio: 1.290128e-01	ci left: 2.254428e-04	ci right 2.567830e-04	k: 922	n:3830000
KS ci ratio: 6.560980e-04	ci left: 9.028083e-01	ci right 9.034010e-01	k: 3458892	n:3830000
COG2   3830000 perm   5918 sec   (647 perm/sec)   p_kst 9.031050e-01   p_cons 2.407311e-04   p_joint 2.328460e-03

Joint ci ratio: 4.140824e-02	ci left: 2.280167e-03	ci right 2.376836e-03	k: 8940	n:3840000
Cons ci ratio: 1.290128e-01	ci left: 2.248557e-04	ci right 2.561143e-04	k: 922	n:3840000
KS ci ratio: 6.552090e-04	ci left: 9.028178e-01	ci right 9.034097e-01	k: 3467958	n:3840000
COG2   3840000 perm   5947 sec   (646 perm/sec)   p_kst 9.031141e-01   p_cons 2.401042e-04   p_joint 2.328125e-03

Joint ci ratio: 4.135971e-02	ci left: 2.279642e-03	ci right 2.376174e-03	k: 8961	n:3850000
Cons ci ratio: 1.289430e-01	ci left: 2.245230e-04	ci right 2.557172e-04	k: 923	n:3850000
KS ci ratio: 6.543800e-04	ci left: 9.028121e-01	ci right 9.034034e-01	k: 3476966	n:3850000
COG2   3850000 perm   5976 sec   (644 perm/sec)   p_kst 9.031081e-01   p_cons 2.397403e-04   p_joint 2.327532e-03

Joint ci ratio: 4.129062e-02	ci left: 2.281428e-03	ci right 2.377870e-03	k: 8991	n:3860000
Cons ci ratio: 1.288037e-01	ci left: 2.244428e-04	ci right 2.555896e-04	k: 925	n:3860000
KS ci ratio: 6.535232e-04	ci left: 9.028148e-01	ci right 9.034053e-01	k: 3486006	n:3860000
COG2   3860000 perm   6004 sec   (643 perm/sec)   p_kst 9.031104e-01   p_cons 2.396373e-04   p_joint 2.329275e-03

Joint ci ratio: 4.122646e-02	ci left: 2.282694e-03	ci right 2.379035e-03	k: 9019	n:3870000
Cons ci ratio: 1.285956e-01	ci left: 2.246131e-04	ci right 2.557293e-04	k: 928	n:3870000
KS ci ratio: 6.526649e-04	ci left: 9.028188e-01	ci right 9.034085e-01	k: 3495051	n:3870000
COG2   3870000 perm   6033 sec   (641 perm/sec)   p_kst 9.031140e-01   p_cons 2.397933e-04   p_joint 2.330491e-03

Joint ci ratio: 4.118770e-02	ci left: 2.281147e-03	ci right 2.377330e-03	k: 9036	n:3880000
Cons ci ratio: 1.283884e-01	ci left: 2.247825e-04	ci right 2.558682e-04	k: 931	n:3880000
KS ci ratio: 6.517764e-04	ci left: 9.028318e-01	ci right 9.034207e-01	k: 3504131	n:3880000
COG2   3880000 perm   6062 sec   (640 perm/sec)   p_kst 9.031265e-01   p_cons 2.399485e-04   p_joint 2.328866e-03

Joint ci ratio: 4.113539e-02	ci left: 2.281134e-03	ci right 2.377192e-03	k: 9059	n:3890000
Cons ci ratio: 1.282509e-01	ci left: 2.247023e-04	ci right 2.557411e-04	k: 933	n:3890000
KS ci ratio: 6.509680e-04	ci left: 9.028241e-01	ci right 9.034123e-01	k: 3513131	n:3890000
COG2   3890000 perm   6091 sec   (639 perm/sec)   p_kst 9.031185e-01   p_cons 2.398458e-04   p_joint 2.328792e-03

Joint ci ratio: 4.109688e-02	ci left: 2.279599e-03	ci right 2.375501e-03	k: 9076	n:3900000
Cons ci ratio: 1.281823e-01	ci left: 2.243743e-04	ci right 2.553500e-04	k: 934	n:3900000
KS ci ratio: 6.501893e-04	ci left: 9.028093e-01	ci right 9.033968e-01	k: 3522103	n:3900000
COG2   3900000 perm   6120 sec   (637 perm/sec)   p_kst 9.031033e-01   p_cons 2.394872e-04   p_joint 2.327179e-03

Joint ci ratio: 4.103813e-02	ci left: 2.280351e-03	ci right 2.376143e-03	k: 9102	n:3910000
Cons ci ratio: 1.280455e-01	ci left: 2.242956e-04	ci right 2.552248e-04	k: 936	n:3910000
KS ci ratio: 6.493811e-04	ci left: 9.028033e-01	ci right 9.033900e-01	k: 3531109	n:3910000
COG2   3910000 perm   6149 sec   (636 perm/sec)   p_kst 9.030969e-01   p_cons 2.393862e-04   p_joint 2.327877e-03

Joint ci ratio: 4.098414e-02	ci left: 2.280593e-03	ci right 2.376267e-03	k: 9126	n:3920000
Cons ci ratio: 1.277730e-01	ci left: 2.247112e-04	ci right 2.556267e-04	k: 940	n:3920000
KS ci ratio: 6.485550e-04	ci left: 9.028029e-01	ci right 9.033889e-01	k: 3540137	n:3920000
COG2   3920000 perm   6178 sec   (635 perm/sec)   p_kst 9.030962e-01   p_cons 2.397959e-04   p_joint 2.328061e-03

Joint ci ratio: 4.092811e-02	ci left: 2.281086e-03	ci right 2.376647e-03	k: 9151	n:3930000
Cons ci ratio: 1.277052e-01	ci left: 2.243857e-04	ci right 2.552389e-04	k: 941	n:3930000
KS ci ratio: 6.477510e-04	ci left: 9.027974e-01	ci right 9.033826e-01	k: 3549145	n:3930000
COG2   3930000 perm   6207 sec   (633 perm/sec)   p_kst 9.030903e-01   p_cons 2.394402e-04   p_joint 2.328499e-03

Joint ci ratio: 4.089019e-02	ci left: 2.279567e-03	ci right 2.374974e-03	k: 9168	n:3940000
Cons ci ratio: 1.275023e-01	ci left: 2.245533e-04	ci right 2.553768e-04	k: 944	n:3940000
KS ci ratio: 6.469284e-04	ci left: 9.027978e-01	ci right 9.033823e-01	k: 3558176	n:3940000
COG2   3940000 perm   6236 sec   (632 perm/sec)   p_kst 9.030904e-01   p_cons 2.395939e-04   p_joint 2.326904e-03

Joint ci ratio: 4.083232e-02	ci left: 2.280311e-03	ci right 2.375611e-03	k: 9194	n:3950000
Cons ci ratio: 1.273004e-01	ci left: 2.247201e-04	ci right 2.555139e-04	k: 947	n:3950000
KS ci ratio: 6.461191e-04	ci left: 9.027954e-01	ci right 9.033792e-01	k: 3567196	n:3950000
COG2   3950000 perm   6266 sec   (630 perm/sec)   p_kst 9.030876e-01   p_cons 2.397468e-04   p_joint 2.327595e-03

Joint ci ratio: 4.079244e-02	ci left: 2.279052e-03	ci right 2.374203e-03	k: 9212	n:3960000
Cons ci ratio: 1.270326e-01	ci left: 2.251306e-04	ci right 2.559109e-04	k: 951	n:3960000
KS ci ratio: 6.453102e-04	ci left: 9.027938e-01	ci right 9.033768e-01	k: 3576219	n:3960000
COG2   3960000 perm   6295 sec   (629 perm/sec)   p_kst 9.030856e-01   p_cons 2.401515e-04   p_joint 2.326263e-03

Joint ci ratio: 4.074604e-02	ci left: 2.278547e-03	ci right 2.373567e-03	k: 9233	n:3970000
Cons ci ratio: 1.269660e-01	ci left: 2.248074e-04	ci right 2.555262e-04	k: 952	n:3970000
KS ci ratio: 6.445005e-04	ci left: 9.027932e-01	ci right 9.033755e-01	k: 3585246	n:3970000
COG2   3970000 perm   6325 sec   (628 perm/sec)   p_kst 9.030846e-01   p_cons 2.397985e-04   p_joint 2.325693e-03

Joint ci ratio: 4.070641e-02	ci left: 2.277298e-03	ci right 2.372172e-03	k: 9251	n:3980000
Cons ci ratio: 1.267004e-01	ci left: 2.252157e-04	ci right 2.559211e-04	k: 956	n:3980000
KS ci ratio: 6.437188e-04	ci left: 9.027858e-01	ci right 9.033674e-01	k: 3594246	n:3980000
COG2   3980000 perm   6354 sec   (626 perm/sec)   p_kst 9.030769e-01   p_cons 2.402010e-04   p_joint 2.324372e-03

Joint ci ratio: 4.065152e-02	ci left: 2.277793e-03	ci right 2.372556e-03	k: 9276	n:3990000
Cons ci ratio: 1.265022e-01	ci left: 2.253794e-04	ci right 2.560553e-04	k: 959	n:3990000
KS ci ratio: 6.429179e-04	ci left: 9.027845e-01	ci right 9.033653e-01	k: 3603270	n:3990000
COG2   3990000 perm   6384 sec   (625 perm/sec)   p_kst 9.030752e-01   p_cons 2.403509e-04   p_joint 2.324812e-03

Joint ci ratio: 4.058591e-02	ci left: 2.279522e-03	ci right 2.374200e-03	k: 9306	n:4000000
Cons ci ratio: 1.263707e-01	ci left: 2.253001e-04	ci right 2.559310e-04	k: 961	n:4000000
KS ci ratio: 6.421492e-04	ci left: 9.027751e-01	ci right 9.033553e-01	k: 3612262	n:4000000
COG2   4000000 perm   6414 sec   (624 perm/sec)   p_kst 9.030655e-01   p_cons 2.402500e-04   p_joint 2.326500e-03

Joint ci ratio: 4.053150e-02	ci left: 2.280009e-03	ci right 2.374577e-03	k: 9331	n:4010000
Cons ci ratio: 1.262395e-01	ci left: 2.252212e-04	ci right 2.558073e-04	k: 963	n:4010000
KS ci ratio: 6.413468e-04	ci left: 9.027758e-01	ci right 9.033553e-01	k: 3621294	n:4010000
COG2   4010000 perm   6444 sec   (622 perm/sec)   p_kst 9.030658e-01   p_cons 2.401496e-04   p_joint 2.326933e-03

Joint ci ratio: 4.048382e-02	ci left: 2.279754e-03	ci right 2.374198e-03	k: 9353	n:4020000
Cons ci ratio: 1.259133e-01	ci left: 2.258655e-04	ci right 2.564539e-04	k: 968	n:4020000
KS ci ratio: 6.405692e-04	ci left: 9.027706e-01	ci right 9.033493e-01	k: 3630302	n:4020000
COG2   4020000 perm   6475 sec   (621 perm/sec)   p_kst 9.030602e-01   p_cons 2.407960e-04   p_joint 2.326617e-03

Joint ci ratio: 4.043630e-02	ci left: 2.279501e-03	ci right 2.373821e-03	k: 9375	n:4030000
Cons ci ratio: 1.257189e-01	ci left: 2.260261e-04	ci right 2.565854e-04	k: 971	n:4030000
KS ci ratio: 6.397909e-04	ci left: 9.027663e-01	ci right 9.033443e-01	k: 3639314	n:4030000
COG2   4030000 perm   6505 sec   (620 perm/sec)   p_kst 9.030556e-01   p_cons 2.409429e-04   p_joint 2.326303e-03

Joint ci ratio: 4.038464e-02	ci left: 2.279740e-03	ci right 2.373946e-03	k: 9399	n:4040000
Cons ci ratio: 1.255253e-01	ci left: 2.261858e-04	ci right 2.567162e-04	k: 974	n:4040000
KS ci ratio: 6.390551e-04	ci left: 9.027511e-01	ci right 9.033285e-01	k: 3648282	n:4040000
COG2   4040000 perm   6535 sec   (618 perm/sec)   p_kst 9.030401e-01   p_cons 2.410891e-04   p_joint 2.326485e-03

Joint ci ratio: 3.973950e-02	ci left: 2.349156e-03	ci right 2.444645e-03	k: 9706	n:4050000
Cons ci ratio: 1.252686e-01	ci left: 2.265840e-04	ci right 2.571009e-04	k: 978	n:4050000
KS ci ratio: 6.382381e-04	ci left: 9.027591e-01	ci right 9.033357e-01	k: 3657343	n:4050000
COG2   4050000 perm   6566 sec   (617 perm/sec)   p_kst 9.030477e-01   p_cons 2.414815e-04   p_joint 2.396543e-03

Joint ci ratio: 3.970888e-02	ci left: 2.347027e-03	ci right 2.442355e-03	k: 9721	n:4060000
Cons ci ratio: 1.250771e-01	ci left: 2.267417e-04	ci right 2.572297e-04	k: 981	n:4060000
KS ci ratio: 6.374610e-04	ci left: 9.027568e-01	ci right 9.033327e-01	k: 3666363	n:4060000
COG2   4060000 perm   6596 sec   (615 perm/sec)   p_kst 9.030451e-01   p_cons 2.416256e-04   p_joint 2.394335e-03

Joint ci ratio: 3.965588e-02	ci left: 2.347585e-03	ci right 2.442805e-03	k: 9747	n:4070000
Cons ci ratio: 1.248231e-01	ci left: 2.271367e-04	ci right 2.576112e-04	k: 985	n:4070000
KS ci ratio: 6.366680e-04	ci left: 9.027598e-01	ci right 9.033350e-01	k: 3675404	n:4070000
COG2   4070000 perm   6626 sec   (614 perm/sec)   p_kst 9.030477e-01   p_cons 2.420147e-04   p_joint 2.394840e-03

Joint ci ratio: 3.961121e-02	ci left: 2.347170e-03	ci right 2.442264e-03	k: 9769	n:4080000
Cons ci ratio: 1.248231e-01	ci left: 2.265800e-04	ci right 2.569798e-04	k: 985	n:4080000
KS ci ratio: 6.359304e-04	ci left: 9.027482e-01	ci right 9.033227e-01	k: 3684386	n:4080000
COG2   4080000 perm   6656 sec   (613 perm/sec)   p_kst 9.030358e-01   p_cons 2.414216e-04   p_joint 2.394363e-03

Joint ci ratio: 3.957480e-02	ci left: 2.345789e-03	ci right 2.440737e-03	k: 9787	n:4090000
Cons ci ratio: 1.246967e-01	ci left: 2.264998e-04	ci right 2.568557e-04	k: 987	n:4090000
KS ci ratio: 6.351058e-04	ci left: 9.027615e-01	ci right 9.033353e-01	k: 3693469	n:4090000
COG2   4090000 perm   6688 sec   (612 perm/sec)   p_kst 9.030487e-01   p_cons 2.413203e-04   p_joint 2.392910e-03

Joint ci ratio: 3.930216e-02	ci left: 2.372912e-03	ci right 2.468281e-03	k: 9923	n:4100000
Cons ci ratio: 1.245707e-01	ci left: 2.264199e-04	ci right 2.567323e-04	k: 989	n:4100000
KS ci ratio: 6.343737e-04	ci left: 9.027500e-01	ci right 9.033231e-01	k: 3702451	n:4100000
COG2   4100000 perm   6721 sec   (610 perm/sec)   p_kst 9.030368e-01   p_cons 2.412195e-04   p_joint 2.420244e-03

Joint ci ratio: 3.925274e-02	ci left: 2.373161e-03	ci right 2.468418e-03	k: 9948	n:4110000
Cons ci ratio: 1.244451e-01	ci left: 2.263405e-04	ci right 2.566094e-04	k: 991	n:4110000
KS ci ratio: 6.335974e-04	ci left: 9.027515e-01	ci right 9.033239e-01	k: 3711486	n:4110000
COG2   4110000 perm   6753 sec   (609 perm/sec)   p_kst 9.030380e-01   p_cons 2.411192e-04   p_joint 2.420438e-03

Joint ci ratio: 4.000557e-02	ci left: 2.278483e-03	ci right 2.371733e-03	k: 9578	n:4120000
Cons ci ratio: 1.241326e-01	ci left: 2.269670e-04	ci right 2.572378e-04	k: 996	n:4120000
KS ci ratio: 6.328125e-04	ci left: 9.027561e-01	ci right 9.033278e-01	k: 3720534	n:4120000
COG2   4120000 perm   6784 sec   (607 perm/sec)   p_kst 9.030422e-01   p_cons 2.417476e-04   p_joint 2.324757e-03

Joint ci ratio: 3.996180e-02	ci left: 2.278000e-03	ci right 2.371126e-03	k: 9599	n:4130000
Cons ci ratio: 1.240083e-01	ci left: 2.268866e-04	ci right 2.571143e-04	k: 998	n:4130000
KS ci ratio: 6.320000e-04	ci left: 9.027692e-01	ci right 9.033402e-01	k: 3729617	n:4130000
COG2   4130000 perm   6814 sec   (606 perm/sec)   p_kst 9.030550e-01   p_cons 2.416465e-04   p_joint 2.324213e-03

Joint ci ratio: 3.991610e-02	ci left: 2.277758e-03	ci right 2.370766e-03	k: 9621	n:4140000
Cons ci ratio: 1.238844e-01	ci left: 2.268067e-04	ci right 2.569913e-04	k: 1000	n:4140000
KS ci ratio: 6.312480e-04	ci left: 9.027663e-01	ci right 9.033365e-01	k: 3738634	n:4140000
COG2   4140000 perm   6844 sec   (605 perm/sec)   p_kst 9.030517e-01   p_cons 2.415459e-04   p_joint 2.323913e-03

Joint ci ratio: 3.907058e-02	ci left: 2.372478e-03	ci right 2.467255e-03	k: 10041	n:4150000
Cons ci ratio: 1.236376e-01	ci left: 2.271942e-04	ci right 2.573657e-04	k: 1004	n:4150000
KS ci ratio: 6.304562e-04	ci left: 9.027752e-01	ci right 9.033447e-01	k: 3747700	n:4150000
COG2   4150000 perm   6875 sec   (604 perm/sec)   p_kst 9.030602e-01   p_cons 2.419277e-04   p_joint 2.419518e-03

Joint ci ratio: 3.903564e-02	ci left: 2.371059e-03	ci right 2.465693e-03	k: 10059	n:4160000
Cons ci ratio: 1.235147e-01	ci left: 2.271140e-04	ci right 2.572427e-04	k: 1006	n:4160000
KS ci ratio: 6.297323e-04	ci left: 9.027660e-01	ci right 9.033349e-01	k: 3756691	n:4160000
COG2   4160000 perm   6907 sec   (602 perm/sec)   p_kst 9.030507e-01   p_cons 2.418269e-04   p_joint 2.418029e-03

Joint ci ratio: 3.899691e-02	ci left: 2.370122e-03	ci right 2.464623e-03	k: 10079	n:4170000
Cons ci ratio: 1.233922e-01	ci left: 2.270342e-04	ci right 2.571202e-04	k: 1008	n:4170000
KS ci ratio: 6.289444e-04	ci left: 9.027753e-01	ci right 9.033435e-01	k: 3765759	n:4170000
COG2   4170000 perm   6938 sec   (601 perm/sec)   p_kst 9.030597e-01   p_cons 2.417266e-04   p_joint 2.417026e-03

Joint ci ratio: 3.893319e-02	ci left: 2.372270e-03	ci right 2.466699e-03	k: 10112	n:4180000
Cons ci ratio: 1.232701e-01	ci left: 2.269547e-04	ci right 2.569983e-04	k: 1010	n:4180000
KS ci ratio: 6.281802e-04	ci left: 9.027789e-01	ci right 9.033464e-01	k: 3774803	n:4180000
COG2   4180000 perm   6969 sec   (600 perm/sec)   p_kst 9.030629e-01   p_cons 2.416268e-04   p_joint 2.419139e-03

Joint ci ratio: 3.942683e-02	ci left: 2.307289e-03	ci right 2.400322e-03	k: 9861	n:4190000
Cons ci ratio: 1.230270e-01	ci left: 2.273383e-04	ci right 2.573690e-04	k: 1014	n:4190000
KS ci ratio: 6.273853e-04	ci left: 9.027917e-01	ci right 9.033585e-01	k: 3783886	n:4190000
COG2   4190000 perm   7001 sec   (599 perm/sec)   p_kst 9.030754e-01   p_cons 2.420048e-04   p_joint 2.353461e-03

Joint ci ratio: 3.883346e-02	ci left: 2.373234e-03	ci right 2.467454e-03	k: 10164	n:4200000
Cons ci ratio: 1.228456e-01	ci left: 2.274893e-04	ci right 2.574924e-04	k: 1017	n:4200000
KS ci ratio: 6.266147e-04	ci left: 9.027986e-01	ci right 9.033647e-01	k: 3792944	n:4200000
COG2   4200000 perm   7033 sec   (597 perm/sec)   p_kst 9.030819e-01   p_cons 2.421429e-04   p_joint 2.420000e-03

Joint ci ratio: 3.879725e-02	ci left: 2.372066e-03	ci right 2.466150e-03	k: 10183	n:4210000
Cons ci ratio: 1.226649e-01	ci left: 2.276397e-04	ci right 2.576153e-04	k: 1020	n:4210000
KS ci ratio: 6.258912e-04	ci left: 9.027930e-01	ci right 9.033585e-01	k: 3801950	n:4210000
COG2   4210000 perm   7065 sec   (596 perm/sec)   p_kst 9.030760e-01   p_cons 2.422803e-04   p_joint 2.418765e-03

Joint ci ratio: 3.875352e-02	ci left: 2.371843e-03	ci right 2.465809e-03	k: 10206	n:4220000
Cons ci ratio: 1.225450e-01	ci left: 2.275597e-04	ci right 2.574933e-04	k: 1022	n:4220000
KS ci ratio: 6.251972e-04	ci left: 9.027799e-01	ci right 9.033447e-01	k: 3810924	n:4220000
COG2   4220000 perm   7096 sec   (595 perm/sec)   p_kst 9.030626e-01   p_cons 2.421801e-04   p_joint 2.418483e-03

Joint ci ratio: 3.872132e-02	ci left: 2.370216e-03	ci right 2.464037e-03	k: 10223	n:4230000
Cons ci ratio: 1.223061e-01	ci left: 2.279384e-04	ci right 2.578591e-04	k: 1026	n:4230000
KS ci ratio: 6.244853e-04	ci left: 9.027725e-01	ci right 9.033367e-01	k: 3819922	n:4230000
COG2   4230000 perm   7128 sec   (593 perm/sec)   p_kst 9.030548e-01   p_cons 2.425532e-04   p_joint 2.416785e-03

Joint ci ratio: 3.864761e-02	ci left: 2.373735e-03	ci right 2.467513e-03	k: 10262	n:4240000
Cons ci ratio: 1.221278e-01	ci left: 2.280867e-04	ci right 2.579801e-04	k: 1029	n:4240000
KS ci ratio: 6.237472e-04	ci left: 9.027732e-01	ci right 9.033367e-01	k: 3828954	n:4240000
COG2   4240000 perm   7160 sec   (592 perm/sec)   p_kst 9.030552e-01   p_cons 2.426887e-04   p_joint 2.420283e-03

Joint ci ratio: 3.861002e-02	ci left: 2.372810e-03	ci right 2.466458e-03	k: 10282	n:4250000
Cons ci ratio: 1.218914e-01	ci left: 2.284625e-04	ci right 2.583430e-04	k: 1033	n:4250000
KS ci ratio: 6.229841e-04	ci left: 9.027816e-01	ci right 9.033444e-01	k: 3838019	n:4250000
COG2   4250000 perm   7192 sec   (591 perm/sec)   p_kst 9.030633e-01   p_cons 2.430588e-04   p_joint 2.419294e-03

Joint ci ratio: 3.855567e-02	ci left: 2.373982e-03	ci right 2.467542e-03	k: 10311	n:4260000
Cons ci ratio: 1.216562e-01	ci left: 2.288366e-04	ci right 2.587041e-04	k: 1037	n:4260000
KS ci ratio: 6.222338e-04	ci left: 9.027872e-01	ci right 9.033493e-01	k: 3847072	n:4260000
COG2   4260000 perm   7224 sec   (590 perm/sec)   p_kst 9.030685e-01   p_cons 2.434272e-04   p_joint 2.420423e-03

Joint ci ratio: 3.851836e-02	ci left: 2.373061e-03	ci right 2.466492e-03	k: 10331	n:4270000
Cons ci ratio: 1.216563e-01	ci left: 2.283006e-04	ci right 2.580982e-04	k: 1037	n:4270000
KS ci ratio: 6.214920e-04	ci left: 9.027911e-01	ci right 9.033526e-01	k: 3856118	n:4270000
COG2   4270000 perm   7256 sec   (588 perm/sec)   p_kst 9.030721e-01   p_cons 2.428571e-04   p_joint 2.419438e-03

Joint ci ratio: 3.846998e-02	ci left: 2.373533e-03	ci right 2.466862e-03	k: 10357	n:4280000
Cons ci ratio: 1.215393e-01	ci left: 2.282203e-04	ci right 2.579767e-04	k: 1039	n:4280000
KS ci ratio: 6.207852e-04	ci left: 9.027859e-01	ci right 9.033467e-01	k: 3865125	n:4280000
COG2   4280000 perm   7288 sec   (587 perm/sec)   p_kst 9.030666e-01   p_cons 2.427570e-04   p_joint 2.419860e-03

Joint ci ratio: 3.840324e-02	ci left: 2.376311e-03	ci right 2.469584e-03	k: 10393	n:4290000
Cons ci ratio: 1.214226e-01	ci left: 2.281403e-04	ci right 2.578557e-04	k: 1041	n:4290000
KS ci ratio: 6.200577e-04	ci left: 9.027872e-01	ci right 9.033474e-01	k: 3874160	n:4290000
COG2   4290000 perm   7321 sec   (586 perm/sec)   p_kst 9.030676e-01   p_cons 2.426573e-04   p_joint 2.422611e-03

Joint ci ratio: 3.835529e-02	ci left: 2.376773e-03	ci right 2.469946e-03	k: 10419	n:4300000
Cons ci ratio: 1.213644e-01	ci left: 2.278353e-04	ci right 2.574957e-04	k: 1042	n:4300000
KS ci ratio: 6.193376e-04	ci left: 9.027872e-01	ci right 9.033467e-01	k: 3883189	n:4300000
COG2   4300000 perm   7354 sec   (585 perm/sec)   p_kst 9.030672e-01   p_cons 2.423256e-04   p_joint 2.423023e-03

Joint ci ratio: 3.830936e-02	ci left: 2.377003e-03	ci right 2.470071e-03	k: 10444	n:4310000
Cons ci ratio: 1.212482e-01	ci left: 2.277566e-04	ci right 2.573763e-04	k: 1044	n:4310000
KS ci ratio: 6.186144e-04	ci left: 9.027887e-01	ci right 9.033476e-01	k: 3892225	n:4310000
COG2   4310000 perm   7386 sec   (584 perm/sec)   p_kst 9.030684e-01   p_cons 2.422274e-04   p_joint 2.423202e-03

Joint ci ratio: 3.825993e-02	ci left: 2.377691e-03	ci right 2.470663e-03	k: 10471	n:4320000
Cons ci ratio: 1.210168e-01	ci left: 2.281273e-04	ci right 2.577345e-04	k: 1048	n:4320000
KS ci ratio: 6.179304e-04	ci left: 9.027799e-01	ci right 9.033381e-01	k: 3901216	n:4320000
COG2   4320000 perm   7418 sec   (582 perm/sec)   p_kst 9.030593e-01   p_cons 2.425926e-04   p_joint 2.423843e-03

Joint ci ratio: 3.820340e-02	ci left: 2.379291e-03	ci right 2.472185e-03	k: 10502	n:4330000
Cons ci ratio: 1.210168e-01	ci left: 2.276004e-04	ci right 2.571393e-04	k: 1048	n:4330000
KS ci ratio: 6.172218e-04	ci left: 9.027787e-01	ci right 9.033363e-01	k: 3910240	n:4330000
COG2   4330000 perm   7451 sec   (581 perm/sec)   p_kst 9.030577e-01   p_cons 2.420323e-04   p_joint 2.425404e-03

Joint ci ratio: 3.816891e-02	ci left: 2.378145e-03	ci right 2.470908e-03	k: 10521	n:4340000
Cons ci ratio: 1.209592e-01	ci left: 2.272994e-04	ci right 2.567842e-04	k: 1049	n:4340000
KS ci ratio: 6.165529e-04	ci left: 9.027669e-01	ci right 9.033239e-01	k: 3919218	n:4340000
COG2   4340000 perm   7483 sec   (580 perm/sec)   p_kst 9.030456e-01   p_cons 2.417051e-04   p_joint 2.424194e-03

Joint ci ratio: 3.813271e-02	ci left: 2.377232e-03	ci right 2.469869e-03	k: 10541	n:4350000
Cons ci ratio: 1.208441e-01	ci left: 2.272228e-04	ci right 2.566676e-04	k: 1051	n:4350000
KS ci ratio: 6.158143e-04	ci left: 9.027756e-01	ci right 9.033319e-01	k: 3928285	n:4350000
COG2   4350000 perm   7516 sec   (579 perm/sec)   p_kst 9.030540e-01   p_cons 2.416092e-04   p_joint 2.423218e-03

Joint ci ratio: 3.808937e-02	ci left: 2.377231e-03	ci right 2.469762e-03	k: 10565	n:4360000
Cons ci ratio: 1.207294e-01	ci left: 2.271465e-04	ci right 2.565515e-04	k: 1053	n:4360000
KS ci ratio: 6.151363e-04	ci left: 9.027677e-01	ci right 9.033235e-01	k: 3937280	n:4360000
COG2   4360000 perm   7548 sec   (578 perm/sec)   p_kst 9.030459e-01   p_cons 2.415138e-04   p_joint 2.423165e-03

Joint ci ratio: 3.804259e-02	ci left: 2.377685e-03	ci right 2.470116e-03	k: 10591	n:4370000
Cons ci ratio: 1.206722e-01	ci left: 2.268486e-04	ci right 2.562001e-04	k: 1054	n:4370000
KS ci ratio: 6.143907e-04	ci left: 9.027799e-01	ci right 9.033349e-01	k: 3946362	n:4370000
COG2   4370000 perm   7581 sec   (576 perm/sec)   p_kst 9.030577e-01   p_cons 2.411899e-04   p_joint 2.423570e-03

Joint ci ratio: 3.799777e-02	ci left: 2.377910e-03	ci right 2.470239e-03	k: 10616	n:4380000
Cons ci ratio: 1.206151e-01	ci left: 2.265521e-04	ci right 2.558504e-04	k: 1055	n:4380000
KS ci ratio: 6.136598e-04	ci left: 9.027885e-01	ci right 9.033429e-01	k: 3955429	n:4380000
COG2   4380000 perm   7614 sec   (575 perm/sec)   p_kst 9.030660e-01   p_cons 2.408676e-04   p_joint 2.423744e-03

Joint ci ratio: 3.794596e-02	ci left: 2.379036e-03	ci right 2.471280e-03	k: 10645	n:4390000
Cons ci ratio: 1.205011e-01	ci left: 2.264779e-04	ci right 2.557369e-04	k: 1057	n:4390000
KS ci ratio: 6.129554e-04	ci left: 9.027903e-01	ci right 9.033440e-01	k: 3964466	n:4390000
COG2   4390000 perm   7647 sec   (574 perm/sec)   p_kst 9.030674e-01   p_cons 2.407745e-04   p_joint 2.424829e-03

Joint ci ratio: 3.791930e-02	ci left: 2.377006e-03	ci right 2.469105e-03	k: 10660	n:4400000
Cons ci ratio: 1.203306e-01	ci left: 2.266244e-04	ci right 2.558580e-04	k: 1060	n:4400000
KS ci ratio: 6.123139e-04	ci left: 9.027747e-01	ci right 9.033279e-01	k: 3973427	n:4400000
COG2   4400000 perm   7681 sec   (573 perm/sec)   p_kst 9.030516e-01   p_cons 2.409091e-04   p_joint 2.422727e-03

Joint ci ratio: 3.786426e-02	ci left: 2.378579e-03	ci right 2.470602e-03	k: 10691	n:4410000
Cons ci ratio: 1.199917e-01	ci left: 2.274302e-04	ci right 2.566793e-04	k: 1066	n:4410000
KS ci ratio: 6.115903e-04	ci left: 9.027833e-01	ci right 9.033359e-01	k: 3982494	n:4410000
COG2   4410000 perm   7713 sec   (572 perm/sec)   p_kst 9.030599e-01   p_cons 2.417234e-04   p_joint 2.424263e-03

Joint ci ratio: 3.783599e-02	ci left: 2.376783e-03	ci right 2.468667e-03	k: 10707	n:4420000
Cons ci ratio: 1.198794e-01	ci left: 2.273546e-04	ci right 2.565646e-04	k: 1068	n:4420000
KS ci ratio: 6.108899e-04	ci left: 9.027860e-01	ci right 9.033379e-01	k: 3991535	n:4420000
COG2   4420000 perm   7747 sec   (571 perm/sec)   p_kst 9.030622e-01   p_cons 2.416290e-04   p_joint 2.422398e-03

Joint ci ratio: 3.777955e-02	ci left: 2.378573e-03	ci right 2.470386e-03	k: 10739	n:4430000
Cons ci ratio: 1.198234e-01	ci left: 2.270603e-04	ci right 2.562179e-04	k: 1069	n:4430000
KS ci ratio: 6.102084e-04	ci left: 9.027839e-01	ci right 9.033352e-01	k: 4000555	n:4430000
COG2   4430000 perm   7780 sec   (569 perm/sec)   p_kst 9.030598e-01   p_cons 2.413093e-04   p_joint 2.424153e-03

Joint ci ratio: 3.773038e-02	ci left: 2.379463e-03	ci right 2.471188e-03	k: 10767	n:4440000
Cons ci ratio: 1.196558e-01	ci left: 2.272044e-04	ci right 2.563368e-04	k: 1072	n:4440000
KS ci ratio: 6.094915e-04	ci left: 9.027927e-01	ci right 9.033433e-01	k: 4009623	n:4440000
COG2   4440000 perm   7813 sec   (568 perm/sec)   p_kst 9.030682e-01   p_cons 2.414414e-04   p_joint 2.425000e-03

Joint ci ratio: 3.769891e-02	ci left: 2.378122e-03	ci right 2.469718e-03	k: 10785	n:4450000
Cons ci ratio: 1.196558e-01	ci left: 2.266938e-04	ci right 2.557607e-04	k: 1072	n:4450000
KS ci ratio: 6.088021e-04	ci left: 9.027942e-01	ci right 9.033442e-01	k: 4018659	n:4450000
COG2   4450000 perm   7846 sec   (567 perm/sec)   p_kst 9.030694e-01   p_cons 2.408989e-04   p_joint 2.423596e-03

Joint ci ratio: 3.765704e-02	ci left: 2.378121e-03	ci right 2.469612e-03	k: 10809	n:4460000
Cons ci ratio: 1.194889e-01	ci left: 2.268380e-04	ci right 2.558800e-04	k: 1075	n:4460000
KS ci ratio: 6.081353e-04	ci left: 9.027898e-01	ci right 9.033392e-01	k: 4027669	n:4460000
COG2   4460000 perm   7879 sec   (566 perm/sec)   p_kst 9.030648e-01   p_cons 2.410314e-04   p_joint 2.423543e-03

Joint ci ratio: 3.761357e-02	ci left: 2.378341e-03	ci right 2.469733e-03	k: 10834	n:4470000
Cons ci ratio: 1.194889e-01	ci left: 2.263306e-04	ci right 2.553076e-04	k: 1075	n:4470000
KS ci ratio: 6.074684e-04	ci left: 9.027862e-01	ci right 9.033350e-01	k: 4036682	n:4470000
COG2   4470000 perm   7913 sec   (565 perm/sec)   p_kst 9.030609e-01   p_cons 2.404922e-04   p_joint 2.423714e-03

Joint ci ratio: 3.757719e-02	ci left: 2.377675e-03	ci right 2.468952e-03	k: 10855	n:4480000
Cons ci ratio: 1.193227e-01	ci left: 2.264750e-04	ci right 2.554274e-04	k: 1078	n:4480000
KS ci ratio: 6.067828e-04	ci left: 9.027886e-01	ci right 9.033368e-01	k: 4045722	n:4480000
COG2   4480000 perm   7947 sec   (564 perm/sec)   p_kst 9.030629e-01   p_cons 2.406250e-04   p_joint 2.422991e-03

Joint ci ratio: 3.754264e-02	ci left: 2.376792e-03	ci right 2.467949e-03	k: 10875	n:4490000
Cons ci ratio: 1.192123e-01	ci left: 2.264028e-04	ci right 2.553172e-04	k: 1080	n:4490000
KS ci ratio: 6.060972e-04	ci left: 9.027917e-01	ci right 9.033392e-01	k: 4054765	n:4490000
COG2   4490000 perm   7980 sec   (563 perm/sec)   p_kst 9.030657e-01   p_cons 2.405345e-04   p_joint 2.422049e-03

Joint ci ratio: 3.748750e-02	ci left: 2.378555e-03	ci right 2.469643e-03	k: 10907	n:4500000
Cons ci ratio: 1.191572e-01	ci left: 2.261152e-04	ci right 2.549787e-04	k: 1081	n:4500000
KS ci ratio: 6.054016e-04	ci left: 9.027983e-01	ci right 9.033452e-01	k: 4063824	n:4500000
COG2   4500000 perm   8014 sec   (561 perm/sec)   p_kst 9.030720e-01   p_cons 2.402222e-04   p_joint 2.423778e-03

Joint ci ratio: 3.744118e-02	ci left: 2.379212e-03	ci right 2.470209e-03	k: 10934	n:4510000
Cons ci ratio: 1.188828e-01	ci left: 2.266895e-04	ci right 2.555549e-04	k: 1086	n:4510000
KS ci ratio: 6.047290e-04	ci left: 9.027989e-01	ci right 9.033452e-01	k: 4072856	n:4510000
COG2   4510000 perm   8048 sec   (560 perm/sec)   p_kst 9.030723e-01   p_cons 2.407982e-04   p_joint 2.424390e-03

Joint ci ratio: 3.738819e-02	ci left: 2.380742e-03	ci right 2.471667e-03	k: 10965	n:4520000
Cons ci ratio: 1.187190e-01	ci left: 2.268320e-04	ci right 2.556730e-04	k: 1089	n:4520000
KS ci ratio: 6.040336e-04	ci left: 9.028068e-01	ci right 9.033525e-01	k: 4081921	n:4520000
COG2   4520000 perm   8082 sec   (559 perm/sec)   p_kst 9.030799e-01   p_cons 2.409292e-04   p_joint 2.425885e-03

Joint ci ratio: 3.735075e-02	ci left: 2.380298e-03	ci right 2.471113e-03	k: 10987	n:4530000
Cons ci ratio: 1.185560e-01	ci left: 2.269739e-04	ci right 2.557905e-04	k: 1092	n:4530000
KS ci ratio: 6.033770e-04	ci left: 9.028040e-01	ci right 9.033491e-01	k: 4090938	n:4530000
COG2   4530000 perm   8115 sec   (558 perm/sec)   p_kst 9.030768e-01   p_cons 2.410596e-04   p_joint 2.425386e-03

Joint ci ratio: 3.730833e-02	ci left: 2.380510e-03	ci right 2.471228e-03	k: 11012	n:4540000
Cons ci ratio: 1.183936e-01	ci left: 2.271151e-04	ci right 2.559074e-04	k: 1095	n:4540000
KS ci ratio: 6.027028e-04	ci left: 9.028070e-01	ci right 9.033515e-01	k: 4099981	n:4540000
COG2   4540000 perm   8150 sec   (557 perm/sec)   p_kst 9.030795e-01   p_cons 2.411894e-04   p_joint 2.425551e-03

Joint ci ratio: 3.726098e-02	ci left: 2.381375e-03	ci right 2.472007e-03	k: 11040	n:4550000
Cons ci ratio: 1.182319e-01	ci left: 2.272558e-04	ci right 2.560238e-04	k: 1098	n:4550000
KS ci ratio: 6.020392e-04	ci left: 9.028076e-01	ci right 9.033515e-01	k: 4109013	n:4550000
COG2   4550000 perm   8184 sec   (556 perm/sec)   p_kst 9.030798e-01   p_cons 2.413187e-04   p_joint 2.426374e-03

Joint ci ratio: 3.723742e-02	ci left: 2.379194e-03	ci right 2.469685e-03	k: 11054	n:4560000
Cons ci ratio: 1.181245e-01	ci left: 2.271831e-04	ci right 2.559139e-04	k: 1100	n:4560000
KS ci ratio: 6.013620e-04	ci left: 9.028127e-01	ci right 9.033560e-01	k: 4118066	n:4560000
COG2   4560000 perm   8218 sec   (555 perm/sec)   p_kst 9.030846e-01   p_cons 2.412281e-04   p_joint 2.424123e-03

Joint ci ratio: 3.719034e-02	ci left: 2.380058e-03	ci right 2.470465e-03	k: 11082	n:4570000
Cons ci ratio: 1.180173e-01	ci left: 2.271107e-04	ci right 2.558045e-04	k: 1102	n:4570000
KS ci ratio: 6.006871e-04	ci left: 9.028179e-01	ci right 9.033606e-01	k: 4127119	n:4570000
COG2   4570000 perm   8253 sec   (554 perm/sec)   p_kst 9.030895e-01   p_cons 2.411379e-04   p_joint 2.424945e-03

Joint ci ratio: 3.716523e-02	ci left: 2.378106e-03	ci right 2.468377e-03	k: 11097	n:4580000
Cons ci ratio: 1.179105e-01	ci left: 2.270386e-04	ci right 2.556955e-04	k: 1104	n:4580000
KS ci ratio: 6.000294e-04	ci left: 9.028187e-01	ci right 9.033607e-01	k: 4136152	n:4580000
COG2   4580000 perm   8288 sec   (553 perm/sec)   p_kst 9.030900e-01   p_cons 2.410480e-04   p_joint 2.422926e-03

Joint ci ratio: 3.712344e-02	ci left: 2.378321e-03	ci right 2.468496e-03	k: 11122	n:4590000
Cons ci ratio: 1.177508e-01	ci left: 2.271783e-04	ci right 2.558113e-04	k: 1107	n:4590000
KS ci ratio: 5.993887e-04	ci left: 9.028150e-01	ci right 9.033566e-01	k: 4145165	n:4590000
COG2   4590000 perm   8322 sec   (552 perm/sec)   p_kst 9.030861e-01   p_cons 2.411765e-04   p_joint 2.423094e-03

Joint ci ratio: 3.707845e-02	ci left: 2.378966e-03	ci right 2.469054e-03	k: 11149	n:4600000
Cons ci ratio: 1.175917e-01	ci left: 2.273174e-04	ci right 2.559266e-04	k: 1110	n:4600000
KS ci ratio: 5.987122e-04	ci left: 9.028226e-01	ci right 9.033635e-01	k: 4154229	n:4600000
COG2   4600000 perm   8357 sec   (550 perm/sec)   p_kst 9.030933e-01   p_cons 2.413043e-04   p_joint 2.423696e-03

Joint ci ratio: 3.705191e-02	ci left: 2.377244e-03	ci right 2.467201e-03	k: 11165	n:4610000
Cons ci ratio: 1.175388e-01	ci left: 2.270348e-04	ci right 2.555947e-04	k: 1111	n:4610000
KS ci ratio: 5.980699e-04	ci left: 9.028207e-01	ci right 9.033610e-01	k: 4163250	n:4610000
COG2   4610000 perm   8392 sec   (549 perm/sec)   p_kst 9.030911e-01   p_cons 2.409978e-04   p_joint 2.421909e-03

Joint ci ratio: 3.702709e-02	ci left: 2.375315e-03	ci right 2.465137e-03	k: 11180	n:4620000
Cons ci ratio: 1.175388e-01	ci left: 2.265434e-04	ci right 2.550415e-04	k: 1111	n:4620000
KS ci ratio: 5.974089e-04	ci left: 9.028249e-01	ci right 9.033646e-01	k: 4172299	n:4620000
COG2   4620000 perm   8426 sec   (548 perm/sec)   p_kst 9.030950e-01   p_cons 2.404762e-04   p_joint 2.419913e-03

Joint ci ratio: 3.699072e-02	ci left: 2.374892e-03	ci right 2.464609e-03	k: 11202	n:4630000
Cons ci ratio: 1.173280e-01	ci left: 2.268927e-04	ci right 2.553799e-04	k: 1115	n:4630000
KS ci ratio: 5.967744e-04	ci left: 9.028220e-01	ci right 9.033611e-01	k: 4181315	n:4630000
COG2   4630000 perm   8461 sec   (547 perm/sec)   p_kst 9.030918e-01   p_cons 2.408207e-04   p_joint 2.419438e-03

Joint ci ratio: 3.694292e-02	ci left: 2.375966e-03	ci right 2.465605e-03	k: 11231	n:4640000
Cons ci ratio: 1.169096e-01	ci left: 2.280773e-04	ci right 2.566041e-04	k: 1123	n:4640000
KS ci ratio: 5.961287e-04	ci left: 9.028229e-01	ci right 9.033615e-01	k: 4190349	n:4640000
COG2   4640000 perm   8495 sec   (546 perm/sec)   p_kst 9.030925e-01   p_cons 2.420259e-04   p_joint 2.420474e-03

Joint ci ratio: 3.675325e-02	ci left: 2.395574e-03	ci right 2.485478e-03	k: 11347	n:4650000
Cons ci ratio: 1.168577e-01	ci left: 2.277956e-04	ci right 2.562737e-04	k: 1124	n:4650000
KS ci ratio: 5.954566e-04	ci left: 9.028323e-01	ci right 9.033702e-01	k: 4199422	n:4650000
COG2   4650000 perm   8530 sec   (545 perm/sec)   p_kst 9.031015e-01   p_cons 2.417204e-04   p_joint 2.440215e-03

Joint ci ratio: 3.687734e-02	ci left: 2.374273e-03	ci right 2.463686e-03	k: 11271	n:4660000
Cons ci ratio: 1.167539e-01	ci left: 2.277234e-04	ci right 2.561654e-04	k: 1126	n:4660000
KS ci ratio: 5.948268e-04	ci left: 9.028298e-01	ci right 9.033672e-01	k: 4208440	n:4660000
COG2   4660000 perm   8565 sec   (544 perm/sec)   p_kst 9.030987e-01   p_cons 2.416309e-04   p_joint 2.418670e-03

Joint ci ratio: 3.682835e-02	ci left: 2.375554e-03	ci right 2.464893e-03	k: 11301	n:4670000
Cons ci ratio: 1.165473e-01	ci left: 2.280673e-04	ci right 2.564984e-04	k: 1130	n:4670000
KS ci ratio: 5.941838e-04	ci left: 9.028318e-01	ci right 9.033686e-01	k: 4217479	n:4670000
COG2   4670000 perm   8601 sec   (543 perm/sec)   p_kst 9.031004e-01   p_cons 2.419700e-04   p_joint 2.419914e-03

Joint ci ratio: 3.680234e-02	ci left: 2.373865e-03	ci right 2.463077e-03	k: 11317	n:4680000
Cons ci ratio: 1.164958e-01	ci left: 2.277874e-04	ci right 2.561702e-04	k: 1131	n:4680000
KS ci ratio: 5.935204e-04	ci left: 9.028404e-01	ci right 9.033766e-01	k: 4226549	n:4680000
COG2   4680000 perm   8635 sec   (542 perm/sec)   p_kst 9.031088e-01   p_cons 2.416667e-04   p_joint 2.418162e-03

Joint ci ratio: 3.676663e-02	ci left: 2.373452e-03	ci right 2.462559e-03	k: 11339	n:4690000
Cons ci ratio: 1.163930e-01	ci left: 2.277158e-04	ci right 2.560629e-04	k: 1133	n:4690000
KS ci ratio: 5.928708e-04	ci left: 9.028456e-01	ci right 9.033812e-01	k: 4235603	n:4690000
COG2   4690000 perm   8671 sec   (541 perm/sec)   p_kst 9.031136e-01   p_cons 2.415778e-04   p_joint 2.417697e-03

Joint ci ratio: 3.672293e-02	ci left: 2.374094e-03	ci right 2.463117e-03	k: 11366	n:4700000
Cons ci ratio: 1.163418e-01	ci left: 2.274378e-04	ci right 2.557370e-04	k: 1134	n:4700000
KS ci ratio: 5.922348e-04	ci left: 9.028473e-01	ci right 9.033824e-01	k: 4244641	n:4700000
COG2   4700000 perm   8705 sec   (540 perm/sec)   p_kst 9.031151e-01   p_cons 2.412766e-04   p_joint 2.418298e-03

Joint ci ratio: 3.669068e-02	ci left: 2.373260e-03	ci right 2.462173e-03	k: 11386	n:4710000
Cons ci ratio: 1.162394e-01	ci left: 2.273672e-04	ci right 2.556310e-04	k: 1136	n:4710000
KS ci ratio: 5.915865e-04	ci left: 9.028533e-01	ci right 9.033878e-01	k: 4253699	n:4710000
COG2   4710000 perm   8741 sec   (539 perm/sec)   p_kst 9.031208e-01   p_cons 2.411890e-04   p_joint 2.417410e-03

Joint ci ratio: 3.666496e-02	ci left: 2.371591e-03	ci right 2.460377e-03	k: 11402	n:4720000
Cons ci ratio: 1.162394e-01	ci left: 2.268855e-04	ci right 2.550894e-04	k: 1136	n:4720000
KS ci ratio: 5.909539e-04	ci left: 9.028553e-01	ci right 9.033892e-01	k: 4262738	n:4720000
COG2   4720000 perm   8776 sec   (538 perm/sec)   p_kst 9.031225e-01   p_cons 2.406780e-04   p_joint 2.415678e-03

Joint ci ratio: 3.663447e-02	ci left: 2.370557e-03	ci right 2.459229e-03	k: 11421	n:4730000
Cons ci ratio: 1.161884e-01	ci left: 2.266111e-04	ci right 2.547677e-04	k: 1137	n:4730000
KS ci ratio: 5.903240e-04	ci left: 9.028570e-01	ci right 9.033903e-01	k: 4271776	n:4730000
COG2   4730000 perm   8812 sec   (537 perm/sec)   p_kst 9.031239e-01   p_cons 2.403805e-04   p_joint 2.414588e-03

Joint ci ratio: 3.660246e-02	ci left: 2.369737e-03	ci right 2.458299e-03	k: 11441	n:4740000
Cons ci ratio: 1.160864e-01	ci left: 2.265427e-04	ci right 2.546644e-04	k: 1139	n:4740000
KS ci ratio: 5.896898e-04	ci left: 9.028606e-01	ci right 9.033934e-01	k: 4280823	n:4740000
COG2   4740000 perm   8848 sec   (536 perm/sec)   p_kst 9.031272e-01   p_cons 2.402954e-04   p_joint 2.413713e-03

Joint ci ratio: 3.656253e-02	ci left: 2.369963e-03	ci right 2.458435e-03	k: 11466	n:4750000
Cons ci ratio: 1.159340e-01	ci left: 2.266790e-04	ci right 2.547782e-04	k: 1142	n:4750000
KS ci ratio: 5.890767e-04	ci left: 9.028585e-01	ci right 9.033907e-01	k: 4289843	n:4750000
COG2   4750000 perm   8884 sec   (535 perm/sec)   p_kst 9.031248e-01   p_cons 2.404211e-04   p_joint 2.413895e-03

Joint ci ratio: 3.652752e-02	ci left: 2.369564e-03	ci right 2.457934e-03	k: 11488	n:4760000
Cons ci ratio: 1.156812e-01	ci left: 2.272228e-04	ci right 2.553238e-04	k: 1147	n:4760000
KS ci ratio: 5.884613e-04	ci left: 9.028577e-01	ci right 9.033893e-01	k: 4298869	n:4760000
COG2   4760000 perm   8920 sec   (534 perm/sec)   p_kst 9.031237e-01   p_cons 2.409664e-04   p_joint 2.413445e-03

Joint ci ratio: 3.649896e-02	ci left: 2.368335e-03	ci right 2.456589e-03	k: 11506	n:4770000
Cons ci ratio: 1.156308e-01	ci left: 2.269500e-04	ci right 2.550042e-04	k: 1148	n:4770000
KS ci ratio: 5.878619e-04	ci left: 9.028526e-01	ci right 9.033838e-01	k: 4307875	n:4770000
COG2   4770000 perm   8956 sec   (533 perm/sec)   p_kst 9.031184e-01   p_cons 2.406709e-04   p_joint 2.412159e-03

Joint ci ratio: 3.647206e-02	ci left: 2.366904e-03	ci right 2.455039e-03	k: 11523	n:4780000
Cons ci ratio: 1.156309e-01	ci left: 2.264752e-04	ci right 2.544707e-04	k: 1148	n:4780000
KS ci ratio: 5.872616e-04	ci left: 9.028485e-01	ci right 9.033791e-01	k: 4316885	n:4780000
COG2   4780000 perm   8991 sec   (532 perm/sec)   p_kst 9.031140e-01   p_cons 2.401674e-04   p_joint 2.410669e-03

Joint ci ratio: 3.643888e-02	ci left: 2.366307e-03	ci right 2.454338e-03	k: 11544	n:4790000
Cons ci ratio: 1.154301e-01	ci left: 2.268134e-04	ci right 2.547987e-04	k: 1152	n:4790000
KS ci ratio: 5.866280e-04	ci left: 9.028548e-01	ci right 9.033848e-01	k: 4325945	n:4790000
COG2   4790000 perm   9027 sec   (531 perm/sec)   p_kst 9.031200e-01   p_cons 2.405010e-04   p_joint 2.410021e-03

Joint ci ratio: 3.641211e-02	ci left: 2.364887e-03	ci right 2.452799e-03	k: 11561	n:4800000
Cons ci ratio: 1.153801e-01	ci left: 2.265432e-04	ci right 2.544822e-04	k: 1153	n:4800000
KS ci ratio: 5.860252e-04	ci left: 9.028525e-01	ci right 9.033820e-01	k: 4334964	n:4800000
COG2   4800000 perm   9063 sec   (530 perm/sec)   p_kst 9.031175e-01   p_cons 2.402083e-04   p_joint 2.408542e-03

Joint ci ratio: 3.636494e-02	ci left: 2.366150e-03	ci right 2.453993e-03	k: 11591	n:4810000
Cons ci ratio: 1.152304e-01	ci left: 2.266779e-04	ci right 2.545948e-04	k: 1156	n:4810000
KS ci ratio: 5.854033e-04	ci left: 9.028565e-01	ci right 9.033854e-01	k: 4344013	n:4810000
COG2   4810000 perm   9099 sec   (529 perm/sec)   p_kst 9.031212e-01   p_cons 2.403326e-04   p_joint 2.409771e-03

Joint ci ratio: 3.633676e-02	ci left: 2.364942e-03	ci right 2.452670e-03	k: 11609	n:4820000
Cons ci ratio: 1.150317e-01	ci left: 2.270136e-04	ci right 2.549203e-04	k: 1160	n:4820000
KS ci ratio: 5.848069e-04	ci left: 9.028534e-01	ci right 9.033818e-01	k: 4353028	n:4820000
COG2   4820000 perm   9135 sec   (528 perm/sec)   p_kst 9.031178e-01   p_cons 2.406639e-04   p_joint 2.408506e-03

Joint ci ratio: 3.630865e-02	ci left: 2.363738e-03	ci right 2.451353e-03	k: 11627	n:4830000
Cons ci ratio: 1.150317e-01	ci left: 2.265436e-04	ci right 2.543926e-04	k: 1160	n:4830000
KS ci ratio: 5.842027e-04	ci left: 9.028532e-01	ci right 9.033810e-01	k: 4362057	n:4830000
COG2   4830000 perm   9172 sec   (527 perm/sec)   p_kst 9.031174e-01   p_cons 2.401656e-04   p_joint 2.407246e-03

Joint ci ratio: 3.628060e-02	ci left: 2.362540e-03	ci right 2.450041e-03	k: 11645	n:4840000
Cons ci ratio: 1.149328e-01	ci left: 2.264769e-04	ci right 2.542921e-04	k: 1162	n:4840000
KS ci ratio: 5.835784e-04	ci left: 9.028597e-01	ci right 9.033869e-01	k: 4371118	n:4840000
COG2   4840000 perm   9208 sec   (526 perm/sec)   p_kst 9.031236e-01   p_cons 2.400826e-04   p_joint 2.405992e-03

Joint ci ratio: 3.623394e-02	ci left: 2.363798e-03	ci right 2.451231e-03	k: 11675	n:4850000
Cons ci ratio: 1.147356e-01	ci left: 2.268110e-04	ci right 2.546162e-04	k: 1166	n:4850000
KS ci ratio: 5.829924e-04	ci left: 9.028552e-01	ci right 9.033819e-01	k: 4380126	n:4850000
COG2   4850000 perm   9244 sec   (525 perm/sec)   p_kst 9.031188e-01   p_cons 2.404124e-04   p_joint 2.407216e-03

Joint ci ratio: 3.620607e-02	ci left: 2.362604e-03	ci right 2.449924e-03	k: 11693	n:4860000
Cons ci ratio: 1.146865e-01	ci left: 2.265441e-04	ci right 2.543039e-04	k: 1167	n:4860000
KS ci ratio: 5.823910e-04	ci left: 9.028558e-01	ci right 9.033820e-01	k: 4389159	n:4860000
COG2   4860000 perm   9280 sec   (524 perm/sec)   p_kst 9.031191e-01   p_cons 2.401235e-04   p_joint 2.405967e-03

Joint ci ratio: 3.616278e-02	ci left: 2.363451e-03	ci right 2.450695e-03	k: 11721	n:4870000
Cons ci ratio: 1.145885e-01	ci left: 2.264778e-04	ci right 2.542042e-04	k: 1169	n:4870000
KS ci ratio: 5.817711e-04	ci left: 9.028626e-01	ci right 9.033882e-01	k: 4398222	n:4870000
COG2   4870000 perm   9317 sec   (523 perm/sec)   p_kst 9.031257e-01   p_cons 2.400411e-04   p_joint 2.406776e-03

Joint ci ratio: 3.613045e-02	ci left: 2.362872e-03	ci right 2.450015e-03	k: 11742	n:4880000
Cons ci ratio: 1.144907e-01	ci left: 2.264118e-04	ci right 2.541048e-04	k: 1171	n:4880000
KS ci ratio: 5.811653e-04	ci left: 9.028657e-01	ci right 9.033908e-01	k: 4407267	n:4880000
COG2   4880000 perm   9353 sec   (522 perm/sec)   p_kst 9.031285e-01   p_cons 2.399590e-04   p_joint 2.406148e-03

Joint ci ratio: 3.609051e-02	ci left: 2.363309e-03	ci right 2.450370e-03	k: 11768	n:4890000
Cons ci ratio: 1.143444e-01	ci left: 2.265448e-04	ci right 2.542163e-04	k: 1174	n:4890000
KS ci ratio: 5.805561e-04	ci left: 9.028704e-01	ci right 9.033949e-01	k: 4416320	n:4890000
COG2   4890000 perm   9389 sec   (521 perm/sec)   p_kst 9.031329e-01   p_cons 2.400818e-04   p_joint 2.406544e-03

Joint ci ratio: 3.606910e-02	ci left: 2.361317e-03	ci right 2.448252e-03	k: 11782	n:4900000
Cons ci ratio: 1.143444e-01	ci left: 2.260824e-04	ci right 2.536974e-04	k: 1174	n:4900000
KS ci ratio: 5.799548e-04	ci left: 9.028733e-01	ci right 9.033973e-01	k: 4425364	n:4900000
COG2   4900000 perm   9426 sec   (520 perm/sec)   p_kst 9.031355e-01   p_cons 2.395918e-04   p_joint 2.404490e-03

Joint ci ratio: 3.603548e-02	ci left: 2.360948e-03	ci right 2.447787e-03	k: 11804	n:4910000
Cons ci ratio: 1.142958e-01	ci left: 2.258198e-04	ci right 2.533902e-04	k: 1175	n:4910000
KS ci ratio: 5.793803e-04	ci left: 9.028686e-01	ci right 9.033920e-01	k: 4434371	n:4910000
COG2   4910000 perm   9462 sec   (519 perm/sec)   p_kst 9.031305e-01   p_cons 2.393075e-04   p_joint 2.404073e-03

Joint ci ratio: 3.601264e-02	ci left: 2.359171e-03	ci right 2.445888e-03	k: 11819	n:4920000
Cons ci ratio: 1.142473e-01	ci left: 2.255583e-04	ci right 2.530843e-04	k: 1176	n:4920000
KS ci ratio: 5.787894e-04	ci left: 9.028694e-01	ci right 9.033923e-01	k: 4443405	n:4920000
COG2   4920000 perm   9500 sec   (518 perm/sec)   p_kst 9.031311e-01   p_cons 2.390244e-04   p_joint 2.402236e-03

Joint ci ratio: 3.596092e-02	ci left: 2.361220e-03	ci right 2.447885e-03	k: 11853	n:4930000
Cons ci ratio: 1.140536e-01	ci left: 2.258889e-04	ci right 2.534054e-04	k: 1180	n:4930000
KS ci ratio: 5.781916e-04	ci left: 9.028729e-01	ci right 9.033952e-01	k: 4452452	n:4930000
COG2   4930000 perm   9537 sec   (517 perm/sec)   p_kst 9.031343e-01   p_cons 2.393509e-04   p_joint 2.404260e-03

Joint ci ratio: 3.592003e-02	ci left: 2.361857e-03	ci right 2.448445e-03	k: 11880	n:4940000
Cons ci ratio: 1.138609e-01	ci left: 2.262183e-04	ci right 2.537253e-04	k: 1184	n:4940000
KS ci ratio: 5.776177e-04	ci left: 9.028696e-01	ci right 9.033915e-01	k: 4461466	n:4940000
COG2   4940000 perm   9574 sec   (516 perm/sec)   p_kst 9.031308e-01   p_cons 2.396761e-04   p_joint 2.404858e-03

Joint ci ratio: 3.587776e-02	ci left: 2.362691e-03	ci right 2.449206e-03	k: 11908	n:4950000
Cons ci ratio: 1.138129e-01	ci left: 2.259576e-04	ci right 2.534205e-04	k: 1185	n:4950000
KS ci ratio: 5.770275e-04	ci left: 9.028718e-01	ci right 9.033932e-01	k: 4470507	n:4950000
COG2   4950000 perm   9612 sec   (515 perm/sec)   p_kst 9.031327e-01   p_cons 2.393939e-04   p_joint 2.405657e-03

Joint ci ratio: 3.583113e-02	ci left: 2.364122e-03	ci right 2.450574e-03	k: 11939	n:4960000
Cons ci ratio: 1.136215e-01	ci left: 2.262855e-04	ci right 2.537389e-04	k: 1189	n:4960000
KS ci ratio: 5.764437e-04	ci left: 9.028726e-01	ci right 9.033934e-01	k: 4479541	n:4960000
COG2   4960000 perm   9649 sec   (514 perm/sec)   p_kst 9.031333e-01   p_cons 2.397177e-04   p_joint 2.407056e-03

Joint ci ratio: 3.579517e-02	ci left: 2.364150e-03	ci right 2.450515e-03	k: 11963	n:4970000
Cons ci ratio: 1.135261e-01	ci left: 2.262212e-04	ci right 2.536422e-04	k: 1191	n:4970000
KS ci ratio: 5.758750e-04	ci left: 9.028694e-01	ci right 9.033897e-01	k: 4488555	n:4970000
COG2   4970000 perm   9686 sec   (513 perm/sec)   p_kst 9.031298e-01   p_cons 2.396378e-04   p_joint 2.407042e-03

Joint ci ratio: 3.575932e-02	ci left: 2.364179e-03	ci right 2.450457e-03	k: 11987	n:4980000
Cons ci ratio: 1.134310e-01	ci left: 2.261572e-04	ci right 2.535459e-04	k: 1193	n:4980000
KS ci ratio: 5.753046e-04	ci left: 9.028672e-01	ci right 9.033870e-01	k: 4497574	n:4980000
COG2   4980000 perm   9724 sec   (512 perm/sec)   p_kst 9.031273e-01   p_cons 2.395582e-04   p_joint 2.407028e-03

Joint ci ratio: 3.571018e-02	ci left: 2.365996e-03	ci right 2.452219e-03	k: 12020	n:4990000
Cons ci ratio: 1.132415e-01	ci left: 2.264828e-04	ci right 2.538621e-04	k: 1197	n:4990000
KS ci ratio: 5.747123e-04	ci left: 9.028722e-01	ci right 9.033914e-01	k: 4506629	n:4990000
COG2   4990000 perm   9761 sec   (511 perm/sec)   p_kst 9.031321e-01   p_cons 2.398798e-04   p_joint 2.408818e-03

Joint ci ratio: 3.567607e-02	ci left: 2.365823e-03	ci right 2.451955e-03	k: 12043	n:5000000
Cons ci ratio: 1.131471e-01	ci left: 2.264185e-04	ci right 2.537657e-04	k: 1199	n:5000000
KS ci ratio: 5.741217e-04	ci left: 9.028772e-01	ci right 9.033959e-01	k: 4515684	n:5000000
COG2   5000000 perm   9799 sec   (510 perm/sec)   p_kst 9.031368e-01   p_cons 2.398000e-04   p_joint 2.408600e-03

Outputting figure to mutsig2_images.part000000000041/COG2.4_2289_5000000_0.90314_0.0002398_0.0024086.png
                gene_name: COG2
               theta_stop: 0.11 
                    nperm: 5000000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.00024 
      ci_cons_bounds_left: 0.00023 
     ci_cons_bounds_right: 0.00025 
                  p_joint: 0.0024 
     ci_joint_bounds_left: 0.0024 
    ci_joint_bounds_right: 0.0025 

Current progress: 56 percent done.
COG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.085047e-03	ci left: 9.446095e-01	ci right 9.533266e-01	k: 9491	n:10000
Cons ci ratio: 4.063115e-02	ci left: 4.721630e-01	ci right 4.918475e-01	k: 4820	n:10000
KS ci ratio: 2.810189e-02	ci left: 6.511231e-01	ci right 6.697834e-01	k: 6605	n:10000
COG4   10000 perm   2 sec   (6144 perm/sec)   p_kst 6.605000e-01   p_cons 4.820000e-01   p_joint 9.491000e-01

Outputting figure to mutsig2_images.part000000000041/COG4.4_2446_10000_0.6605_0.482_0.9491.png
                gene_name: COG4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 57 percent done.
COG6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.470045e-02	ci left: 5.508059e-01	ci right 5.703587e-01	k: 5606	n:10000
Cons ci ratio: 1.937393e-02	ci left: 7.957771e-01	ci right 8.114456e-01	k: 8037	n:10000
KS ci ratio: 5.472561e-02	ci left: 3.297201e-01	ci right 3.483737e-01	k: 3390	n:10000
COG6   10000 perm   2 sec   (6650 perm/sec)   p_kst 3.390000e-01   p_cons 8.037000e-01   p_joint 5.606000e-01

Outputting figure to mutsig2_images.part000000000041/COG6.4_2076_10000_0.339_0.8037_0.5606.png
                gene_name: COG6
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 59 percent done.
COL19A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.515839e-01	ci left: 2.071417e-02	ci right 2.676765e-02	k: 236	n:10000
Cons ci ratio: 1.528930e-02	ci left: 8.612085e-01	ci right 8.745764e-01	k: 8680	n:10000
KS ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
COL19A1   10000 perm   2 sec   (6060 perm/sec)   p_kst 1.600000e-03   p_cons 8.680000e-01   p_joint 2.360000e-02

Joint ci ratio: 2.234803e-01	ci left: 1.345565e-02	ci right 1.688741e-02	k: 302	n:20000
Cons ci ratio: 1.075594e-02	ci left: 8.643975e-01	ci right 8.737949e-01	k: 17383	n:20000
KS ci ratio: 7.538762e-01	ci left: 8.493734e-04	ci right 1.904225e-03	k: 26	n:20000
COL19A1   20000 perm   4 sec   (5428 perm/sec)   p_kst 1.300000e-03   p_cons 8.691500e-01   p_joint 1.510000e-02

Joint ci ratio: 2.397339e-01	ci left: 7.774275e-03	ci right 9.922465e-03	k: 264	n:30000
Cons ci ratio: 8.867303e-03	ci left: 8.630377e-01	ci right 8.707577e-01	k: 26008	n:30000
KS ci ratio: 6.440358e-01	ci left: 8.406024e-04	ci right 1.660923e-03	k: 36	n:30000
COL19A1   30000 perm   6 sec   (5197 perm/sec)   p_kst 1.200000e-03   p_cons 8.669333e-01   p_joint 8.800000e-03

Joint ci ratio: 2.221353e-01	ci left: 6.866777e-03	ci right 8.605832e-03	k: 308	n:40000
Cons ci ratio: 7.688628e-03	ci left: 8.632794e-01	ci right 8.699673e-01	k: 34666	n:40000
KS ci ratio: 6.194887e-01	ci left: 6.934093e-04	ci right 1.332619e-03	k: 39	n:40000
COL19A1   40000 perm   8 sec   (5032 perm/sec)   p_kst 9.750000e-04   p_cons 8.666500e-01   p_joint 7.700000e-03

Joint ci ratio: 2.256391e-01	ci left: 5.323021e-03	ci right 6.695285e-03	k: 299	n:50000
Cons ci ratio: 6.906283e-03	ci left: 8.626397e-01	ci right 8.686378e-01	k: 43283	n:50000
KS ci ratio: 5.486243e-01	ci left: 7.423075e-04	ci right 1.318165e-03	k: 50	n:50000
COL19A1   50000 perm   10 sec   (4899 perm/sec)   p_kst 1.000000e-03   p_cons 8.656600e-01   p_joint 5.980000e-03

Joint ci ratio: 2.337156e-01	ci left: 4.121381e-03	ci right 5.227370e-03	k: 279	n:60000
Cons ci ratio: 6.494122e-03	ci left: 8.558031e-01	ci right 8.613955e-01	k: 51517	n:60000
KS ci ratio: 4.936101e-01	ci left: 7.923397e-04	ci right 1.324494e-03	k: 62	n:60000
COL19A1   60000 perm   12 sec   (4803 perm/sec)   p_kst 1.033333e-03   p_cons 8.586167e-01   p_joint 4.650000e-03

Joint ci ratio: 2.250819e-01	ci left: 3.828773e-03	ci right 4.813012e-03	k: 301	n:70000
Cons ci ratio: 5.997562e-03	ci left: 8.566158e-01	ci right 8.617830e-01	k: 60145	n:70000
KS ci ratio: 4.585587e-01	ci left: 8.048781e-04	ci right 1.295143e-03	k: 72	n:70000
COL19A1   70000 perm   15 sec   (4682 perm/sec)   p_kst 1.028571e-03   p_cons 8.592143e-01   p_joint 4.300000e-03

Joint ci ratio: 1.548181e-01	ci left: 7.334233e-03	ci right 8.576849e-03	k: 635	n:80000
Cons ci ratio: 5.590507e-03	ci left: 8.576392e-01	ci right 8.624597e-01	k: 68805	n:80000
KS ci ratio: 4.326670e-01	ci left: 8.041499e-04	ci right 1.258290e-03	k: 81	n:80000
COL19A1   80000 perm   17 sec   (4590 perm/sec)   p_kst 1.012500e-03   p_cons 8.600625e-01   p_joint 7.937500e-03

Joint ci ratio: 1.572705e-01	ci left: 6.316185e-03	ci right 7.404854e-03	k: 616	n:90000
Cons ci ratio: 5.262648e-03	ci left: 8.581522e-01	ci right 8.626912e-01	k: 77439	n:90000
KS ci ratio: 3.998677e-01	ci left: 8.540888e-04	ci right 1.290210e-03	k: 95	n:90000
COL19A1   90000 perm   20 sec   (4509 perm/sec)   p_kst 1.055556e-03   p_cons 8.604333e-01   p_joint 6.844444e-03

Joint ci ratio: 1.579702e-01	ci left: 5.636380e-03	ci right 6.612599e-03	k: 611	n:100000
Cons ci ratio: 4.824447e-03	ci left: 8.663495e-01	ci right 8.705491e-01	k: 86846	n:100000
KS ci ratio: 3.823500e-01	ci left: 8.498320e-04	ci right 1.259995e-03	k: 104	n:100000
COL19A1   100000 perm   23 sec   (4372 perm/sec)   p_kst 1.040000e-03   p_cons 8.684600e-01   p_joint 6.110000e-03

Joint ci ratio: 1.253069e-01	ci left: 8.265327e-03	ci right 9.378984e-03	k: 969	n:110000
Cons ci ratio: 4.610642e-03	ci left: 8.659122e-01	ci right 8.699229e-01	k: 95472	n:110000
KS ci ratio: 3.622097e-01	ci left: 8.714672e-04	ci right 1.264694e-03	k: 116	n:110000
COL19A1   110000 perm   26 sec   (4292 perm/sec)   p_kst 1.054545e-03   p_cons 8.679273e-01   p_joint 8.809091e-03

Joint ci ratio: 1.306146e-01	ci left: 6.963171e-03	ci right 7.944191e-03	k: 893	n:120000
Cons ci ratio: 4.546335e-03	ci left: 8.590549e-01	ci right 8.629776e-01	k: 103323	n:120000
KS ci ratio: 3.504313e-01	ci left: 8.595444e-04	ci right 1.231914e-03	k: 124	n:120000
COL19A1   120000 perm   29 sec   (4202 perm/sec)   p_kst 1.033333e-03   p_cons 8.610250e-01   p_joint 7.441667e-03

Joint ci ratio: 1.218962e-01	ci left: 7.410990e-03	ci right 8.380385e-03	k: 1025	n:130000
Cons ci ratio: 4.229850e-03	ci left: 8.666896e-01	ci right 8.703709e-01	k: 112910	n:130000
KS ci ratio: 3.323110e-01	ci left: 8.918947e-04	ci right 1.254031e-03	k: 138	n:130000
COL19A1   130000 perm   31 sec   (4143 perm/sec)   p_kst 1.061538e-03   p_cons 8.685385e-01   p_joint 7.884615e-03

Joint ci ratio: 1.244610e-01	ci left: 6.597626e-03	ci right 7.480120e-03	k: 984	n:140000
Cons ci ratio: 4.068123e-03	ci left: 8.671999e-01	ci right 8.707420e-01	k: 121657	n:140000
KS ci ratio: 3.177802e-01	ci left: 9.134739e-04	ci right 1.264859e-03	k: 151	n:140000
COL19A1   140000 perm   34 sec   (4068 perm/sec)   p_kst 1.078571e-03   p_cons 8.689786e-01   p_joint 7.028571e-03

Joint ci ratio: 1.204338e-01	ci left: 6.590769e-03	ci right 7.441788e-03	k: 1051	n:150000
Cons ci ratio: 3.935098e-03	ci left: 8.669737e-01	ci right 8.703987e-01	k: 130304	n:150000
KS ci ratio: 3.078169e-01	ci left: 9.140105e-04	ci right 1.252418e-03	k: 161	n:150000
COL19A1   150000 perm   37 sec   (4016 perm/sec)   p_kst 1.073333e-03   p_cons 8.686933e-01   p_joint 7.006667e-03

Joint ci ratio: 1.029070e-01	ci left: 8.524767e-03	ci right 9.455656e-03	k: 1437	n:160000
Cons ci ratio: 3.806688e-03	ci left: 8.672364e-01	ci right 8.705502e-01	k: 139024	n:160000
KS ci ratio: 2.961611e-01	ci left: 9.319826e-04	ci right 1.261526e-03	k: 174	n:160000
COL19A1   160000 perm   40 sec   (3953 perm/sec)   p_kst 1.087500e-03   p_cons 8.689000e-01   p_joint 8.981250e-03

Joint ci ratio: 1.213575e-01	ci left: 5.729662e-03	ci right 6.475568e-03	k: 1036	n:170000
Cons ci ratio: 3.810771e-03	ci left: 8.599316e-01	ci right 8.632207e-01	k: 146469	n:170000
KS ci ratio: 2.872702e-01	ci left: 9.371329e-04	ci right 1.256744e-03	k: 185	n:170000
COL19A1   170000 perm   44 sec   (3898 perm/sec)   p_kst 1.088235e-03   p_cons 8.615824e-01   p_joint 6.094118e-03

Joint ci ratio: 1.199327e-01	ci left: 5.546013e-03	ci right 6.258931e-03	k: 1061	n:180000
Cons ci ratio: 3.698555e-03	ci left: 8.602920e-01	ci right 8.634852e-01	k: 155141	n:180000
KS ci ratio: 2.812871e-01	ci left: 9.263455e-04	ci right 1.234531e-03	k: 193	n:180000
COL19A1   180000 perm   47 sec   (3848 perm/sec)   p_kst 1.072222e-03   p_cons 8.618944e-01   p_joint 5.894444e-03

Joint ci ratio: 1.209869e-01	ci left: 5.162173e-03	ci right 5.831998e-03	k: 1043	n:190000
Cons ci ratio: 3.598868e-03	ci left: 8.604040e-01	ci right 8.635113e-01	k: 163773	n:190000
KS ci ratio: 2.729705e-01	ci left: 9.363612e-04	ci right 1.237090e-03	k: 205	n:190000
COL19A1   190000 perm   50 sec   (3800 perm/sec)   p_kst 1.078947e-03   p_cons 8.619632e-01   p_joint 5.489474e-03

Joint ci ratio: 1.221258e-01	ci left: 4.811900e-03	ci right 5.442575e-03	k: 1024	n:200000
Cons ci ratio: 3.508230e-03	ci left: 8.604104e-01	ci right 8.634391e-01	k: 172386	n:200000
KS ci ratio: 2.629465e-01	ci left: 9.641727e-04	ci right 1.260592e-03	k: 221	n:200000
COL19A1   200000 perm   53 sec   (3756 perm/sec)   p_kst 1.105000e-03   p_cons 8.619300e-01   p_joint 5.120000e-03

Joint ci ratio: 9.900686e-02	ci left: 7.042519e-03	ci right 7.780699e-03	k: 1555	n:210000
Cons ci ratio: 3.423701e-03	ci left: 8.604457e-01	ci right 8.634014e-01	k: 181005	n:210000
KS ci ratio: 2.555689e-01	ci left: 9.761433e-04	ci right 1.266481e-03	k: 234	n:210000
COL19A1   210000 perm   57 sec   (3708 perm/sec)   p_kst 1.114286e-03   p_cons 8.619286e-01   p_joint 7.404762e-03

Joint ci ratio: 1.022851e-01	ci left: 6.292466e-03	ci right 6.975176e-03	k: 1458	n:220000
Cons ci ratio: 3.345066e-03	ci left: 8.604741e-01	ci right 8.633618e-01	k: 189623	n:220000
KS ci ratio: 2.508125e-01	ci left: 9.700862e-04	ci right 1.252414e-03	k: 243	n:220000
COL19A1   220000 perm   60 sec   (3661 perm/sec)   p_kst 1.104545e-03   p_cons 8.619227e-01   p_joint 6.627273e-03

Joint ci ratio: 1.063355e-01	ci left: 5.561449e-03	ci right 6.190232e-03	k: 1350	n:230000
Cons ci ratio: 3.269878e-03	ci left: 8.606274e-01	ci right 8.634504e-01	k: 198270	n:230000
KS ci ratio: 2.453433e-01	ci left: 9.727618e-04	ci right 1.248754e-03	k: 254	n:230000
COL19A1   230000 perm   64 sec   (3614 perm/sec)   p_kst 1.104348e-03   p_cons 8.620435e-01   p_joint 5.869565e-03

Joint ci ratio: 1.075971e-01	ci left: 5.203959e-03	ci right 5.799746e-03	k: 1319	n:240000
Cons ci ratio: 3.199765e-03	ci left: 8.607518e-01	ci right 8.635145e-01	k: 206913	n:240000
KS ci ratio: 2.411261e-01	ci left: 9.674444e-04	ci right 1.236504e-03	k: 263	n:240000
COL19A1   240000 perm   67 sec   (3570 perm/sec)   p_kst 1.095833e-03   p_cons 8.621375e-01   p_joint 5.495833e-03

Joint ci ratio: 9.497524e-02	ci left: 6.446432e-03	ci right 7.093082e-03	k: 1691	n:250000
Cons ci ratio: 3.137878e-03	ci left: 8.605695e-01	ci right 8.632781e-01	k: 215482	n:250000
KS ci ratio: 2.379935e-01	ci left: 9.550652e-04	ci right 1.216723e-03	k: 270	n:250000
COL19A1   250000 perm   71 sec   (3528 perm/sec)   p_kst 1.080000e-03   p_cons 8.619280e-01   p_joint 6.764000e-03

Joint ci ratio: 9.596300e-02	ci left: 6.070789e-03	ci right 6.686446e-03	k: 1657	n:260000
Cons ci ratio: 3.075414e-03	ci left: 8.607147e-01	ci right 8.633696e-01	k: 224132	n:260000
KS ci ratio: 2.320730e-01	ci left: 9.690087e-04	ci right 1.226936e-03	k: 284	n:260000
COL19A1   260000 perm   75 sec   (3486 perm/sec)   p_kst 1.092308e-03   p_cons 8.620462e-01   p_joint 6.373077e-03

Joint ci ratio: 9.505577e-02	ci left: 5.961616e-03	ci right 6.560167e-03	k: 1689	n:270000
Cons ci ratio: 3.019027e-03	ci left: 8.606524e-01	ci right 8.632583e-01	k: 232729	n:270000
KS ci ratio: 2.269537e-01	ci left: 9.785002e-04	ci right 1.232404e-03	k: 297	n:270000
COL19A1   270000 perm   78 sec   (3447 perm/sec)   p_kst 1.100000e-03   p_cons 8.619593e-01   p_joint 6.255556e-03

Joint ci ratio: 9.523670e-02	ci left: 5.727750e-03	ci right 6.303975e-03	k: 1683	n:280000
Cons ci ratio: 2.969410e-03	ci left: 8.602903e-01	ci right 8.628522e-01	k: 241241	n:280000
KS ci ratio: 2.221589e-01	ci left: 9.873716e-04	ci right 1.237425e-03	k: 310	n:280000
COL19A1   280000 perm   82 sec   (3410 perm/sec)   p_kst 1.107143e-03   p_cons 8.615750e-01   p_joint 6.010714e-03

Joint ci ratio: 9.350327e-02	ci left: 5.742358e-03	ci right 6.308962e-03	k: 1746	n:290000
Cons ci ratio: 2.917837e-03	ci left: 8.603067e-01	ci right 8.628240e-01	k: 249855	n:290000
KS ci ratio: 2.183314e-01	ci left: 9.891631e-04	ci right 1.234775e-03	k: 321	n:290000
COL19A1   290000 perm   86 sec   (3372 perm/sec)   p_kst 1.106897e-03   p_cons 8.615690e-01   p_joint 6.020690e-03

Joint ci ratio: 9.168298e-02	ci left: 5.778881e-03	ci right 6.337393e-03	k: 1816	n:300000
Cons ci ratio: 2.870545e-03	ci left: 8.601818e-01	ci right 8.626579e-01	k: 258427	n:300000
KS ci ratio: 2.140525e-01	ci left: 9.971786e-04	ci right 1.239291e-03	k: 334	n:300000
COL19A1   300000 perm   90 sec   (3334 perm/sec)   p_kst 1.113333e-03   p_cons 8.614233e-01   p_joint 6.053333e-03

Joint ci ratio: 9.275050e-02	ci left: 5.463216e-03	ci right 5.997700e-03	k: 1775	n:310000
Cons ci ratio: 2.825325e-03	ci left: 8.600783e-01	ci right 8.625149e-01	k: 267003	n:310000
KS ci ratio: 2.118520e-01	ci left: 9.863874e-04	ci right 1.223098e-03	k: 341	n:310000
COL19A1   310000 perm   94 sec   (3296 perm/sec)   p_kst 1.100000e-03   p_cons 8.613000e-01   p_joint 5.725806e-03

Joint ci ratio: 9.190414e-02	ci left: 5.393225e-03	ci right 5.915788e-03	k: 1808	n:320000
Cons ci ratio: 2.780755e-03	ci left: 8.601039e-01	ci right 8.625021e-01	k: 275618	n:320000
KS ci ratio: 2.079362e-01	ci left: 9.940530e-04	ci right 1.227633e-03	k: 354	n:320000
COL19A1   320000 perm   98 sec   (3255 perm/sec)   p_kst 1.106250e-03   p_cons 8.613063e-01   p_joint 5.650000e-03

Joint ci ratio: 9.214282e-02	ci left: 5.203126e-03	ci right 5.708649e-03	k: 1799	n:330000
Cons ci ratio: 2.738891e-03	ci left: 8.600704e-01	ci right 8.624323e-01	k: 284214	n:330000
KS ci ratio: 2.045082e-01	ci left: 9.984163e-04	ci right 1.228670e-03	k: 366	n:330000
COL19A1   330000 perm   102 sec   (3220 perm/sec)   p_kst 1.109091e-03   p_cons 8.612545e-01   p_joint 5.451515e-03

Joint ci ratio: 9.269542e-02	ci left: 4.989730e-03	ci right 5.477585e-03	k: 1778	n:340000
Cons ci ratio: 2.697932e-03	ci left: 8.601219e-01	ci right 8.624484e-01	k: 292838	n:340000
KS ci ratio: 2.036799e-01	ci left: 9.774226e-04	ci right 1.201808e-03	k: 369	n:340000
COL19A1   340000 perm   107 sec   (3186 perm/sec)   p_kst 1.085294e-03   p_cons 8.612882e-01   p_joint 5.229412e-03

Joint ci ratio: 9.139482e-02	ci left: 4.989526e-03	ci right 5.470150e-03	k: 1829	n:350000
Cons ci ratio: 2.659329e-03	ci left: 8.601190e-01	ci right 8.624122e-01	k: 301444	n:350000
KS ci ratio: 2.004549e-01	ci left: 9.820475e-04	ci right 1.203489e-03	k: 381	n:350000
COL19A1   350000 perm   111 sec   (3152 perm/sec)   p_kst 1.088571e-03   p_cons 8.612686e-01   p_joint 5.225714e-03

Joint ci ratio: 9.029234e-02	ci left: 4.973087e-03	ci right 5.446043e-03	k: 1874	n:360000
Cons ci ratio: 2.622032e-03	ci left: 8.601444e-01	ci right 8.624054e-01	k: 310060	n:360000
KS ci ratio: 1.986442e-01	ci left: 9.732409e-04	ci right 1.190474e-03	k: 388	n:360000
COL19A1   360000 perm   115 sec   (3119 perm/sec)   p_kst 1.077778e-03   p_cons 8.612778e-01   p_joint 5.205556e-03

Joint ci ratio: 8.951043e-02	ci left: 4.925857e-03	ci right 5.390052e-03	k: 1907	n:370000
Cons ci ratio: 2.587081e-03	ci left: 8.600926e-01	ci right 8.623233e-01	k: 318648	n:370000
KS ci ratio: 1.963859e-01	ci left: 9.700584e-04	ci right 1.183825e-03	k: 397	n:370000
COL19A1   370000 perm   120 sec   (3087 perm/sec)   p_kst 1.072973e-03   p_cons 8.612108e-01   p_joint 5.154054e-03

Joint ci ratio: 8.573674e-02	ci left: 5.236408e-03	ci right 5.708024e-03	k: 2078	n:380000
Cons ci ratio: 2.550793e-03	ci left: 8.602973e-01	ci right 8.624972e-01	k: 327332	n:380000
KS ci ratio: 1.927855e-01	ci left: 9.820819e-04	ci right 1.194065e-03	k: 412	n:380000
COL19A1   380000 perm   124 sec   (3053 perm/sec)   p_kst 1.084211e-03   p_cons 8.614000e-01   p_joint 5.468421e-03

Joint ci ratio: 8.478459e-02	ci left: 5.220082e-03	ci right 5.684748e-03	k: 2125	n:390000
Cons ci ratio: 2.518527e-03	ci left: 8.602499e-01	ci right 8.624217e-01	k: 335922	n:390000
KS ci ratio: 1.911731e-01	ci left: 9.739859e-04	ci right 1.182259e-03	k: 419	n:390000
COL19A1   390000 perm   129 sec   (3020 perm/sec)   p_kst 1.074359e-03   p_cons 8.613385e-01   p_joint 5.448718e-03

Joint ci ratio: 8.380532e-02	ci left: 5.211944e-03	ci right 5.670265e-03	k: 2175	n:400000
Cons ci ratio: 2.487142e-03	ci left: 8.602351e-01	ci right 8.623797e-01	k: 344524	n:400000
KS ci ratio: 1.891576e-01	ci left: 9.710650e-04	ci right 1.176273e-03	k: 428	n:400000
COL19A1   400000 perm   134 sec   (2987 perm/sec)   p_kst 1.070000e-03   p_cons 8.613100e-01   p_joint 5.437500e-03

Joint ci ratio: 8.256140e-02	ci left: 5.242454e-03	ci right 5.696286e-03	k: 2241	n:410000
Cons ci ratio: 2.457804e-03	ci left: 8.601330e-01	ci right 8.622521e-01	k: 353090	n:410000
KS ci ratio: 1.869910e-01	ci left: 9.706224e-04	ci right 1.173120e-03	k: 438	n:410000
COL19A1   410000 perm   139 sec   (2951 perm/sec)   p_kst 1.068293e-03   p_cons 8.611951e-01   p_joint 5.465854e-03

Joint ci ratio: 7.912714e-02	ci left: 5.579572e-03	ci right 6.041571e-03	k: 2439	n:420000
Cons ci ratio: 2.427932e-03	ci left: 8.601889e-01	ci right 8.622823e-01	k: 361720	n:420000
KS ci ratio: 1.844862e-01	ci left: 9.747555e-04	ci right 1.175087e-03	k: 450	n:420000
COL19A1   420000 perm   144 sec   (2922 perm/sec)   p_kst 1.071429e-03   p_cons 8.612381e-01   p_joint 5.807143e-03

Joint ci ratio: 7.844038e-02	ci left: 5.547841e-03	ci right 6.003043e-03	k: 2482	n:430000
Cons ci ratio: 2.399076e-03	ci left: 8.602470e-01	ci right 8.623156e-01	k: 370352	n:430000
KS ci ratio: 1.824745e-01	ci left: 9.742744e-04	ci right 1.172082e-03	k: 460	n:430000
COL19A1   430000 perm   149 sec   (2892 perm/sec)   p_kst 1.069767e-03   p_cons 8.612837e-01   p_joint 5.772093e-03

Joint ci ratio: 7.973127e-02	ci left: 5.245726e-03	ci right 5.683552e-03	k: 2403	n:440000
Cons ci ratio: 2.370435e-03	ci left: 8.603824e-01	ci right 8.624265e-01	k: 379019	n:440000
KS ci ratio: 1.791990e-01	ci left: 9.890201e-04	ci right 1.185827e-03	k: 477	n:440000
COL19A1   440000 perm   154 sec   (2860 perm/sec)   p_kst 1.084091e-03   p_cons 8.614068e-01   p_joint 5.461364e-03

Joint ci ratio: 8.020710e-02	ci left: 5.068158e-03	ci right 5.493805e-03	k: 2375	n:450000
Cons ci ratio: 2.344234e-03	ci left: 8.603647e-01	ci right 8.623862e-01	k: 387620	n:450000
KS ci ratio: 1.762721e-01	ci left: 1.001016e-03	ci right 1.196610e-03	k: 493	n:450000
COL19A1   450000 perm   159 sec   (2831 perm/sec)   p_kst 1.095556e-03   p_cons 8.613778e-01   p_joint 5.277778e-03

Joint ci ratio: 7.974080e-02	ci left: 5.017628e-03	ci right 5.436467e-03	k: 2403	n:460000
Cons ci ratio: 2.317996e-03	ci left: 8.604396e-01	ci right 8.624385e-01	k: 396263	n:460000
KS ci ratio: 1.741692e-01	ci left: 1.004198e-03	ci right 1.197826e-03	k: 505	n:460000
COL19A1   460000 perm   164 sec   (2804 perm/sec)   p_kst 1.097826e-03   p_cons 8.614413e-01   p_joint 5.223913e-03

Joint ci ratio: 7.952940e-02	ci left: 4.937971e-03	ci right 5.349017e-03	k: 2416	n:470000
Cons ci ratio: 2.293825e-03	ci left: 8.603854e-01	ci right 8.623633e-01	k: 404847	n:470000
KS ci ratio: 1.721398e-01	ci left: 1.007258e-03	ci right 1.198978e-03	k: 517	n:470000
COL19A1   470000 perm   169 sec   (2777 perm/sec)   p_kst 1.100000e-03   p_cons 8.613766e-01   p_joint 5.140426e-03

Joint ci ratio: 7.879977e-02	ci left: 4.926989e-03	ci right 5.333186e-03	k: 2461	n:480000
Cons ci ratio: 2.268929e-03	ci left: 8.604882e-01	ci right 8.624449e-01	k: 413505	n:480000
KS ci ratio: 1.705021e-01	ci left: 1.006213e-03	ci right 1.195725e-03	k: 527	n:480000
COL19A1   480000 perm   175 sec   (2750 perm/sec)   p_kst 1.097917e-03   p_cons 8.614688e-01   p_joint 5.127083e-03

Joint ci ratio: 7.854780e-02	ci left: 4.858442e-03	ci right 5.257649e-03	k: 2477	n:490000
Cons ci ratio: 2.245555e-03	ci left: 8.605092e-01	ci right 8.624457e-01	k: 422125	n:490000
KS ci ratio: 1.685968e-01	ci left: 1.009129e-03	ci right 1.196850e-03	k: 539	n:490000
COL19A1   490000 perm   180 sec   (2724 perm/sec)   p_kst 1.100000e-03   p_cons 8.614796e-01   p_joint 5.055102e-03

Joint ci ratio: 7.778266e-02	ci left: 4.857358e-03	ci right 5.252411e-03	k: 2526	n:500000
Cons ci ratio: 2.222554e-03	ci left: 8.605655e-01	ci right 8.624823e-01	k: 430763	n:500000
KS ci ratio: 1.669054e-01	ci left: 1.010023e-03	ci right 1.195836e-03	k: 550	n:500000
COL19A1   500000 perm   185 sec   (2698 perm/sec)   p_kst 1.100000e-03   p_cons 8.615260e-01   p_joint 5.052000e-03

Joint ci ratio: 7.767848e-02	ci left: 4.775566e-03	ci right 5.163423e-03	k: 2533	n:510000
Cons ci ratio: 2.201439e-03	ci left: 8.604900e-01	ci right 8.623883e-01	k: 439335	n:510000
KS ci ratio: 1.658559e-01	ci left: 1.003372e-03	ci right 1.186685e-03	k: 557	n:510000
COL19A1   510000 perm   191 sec   (2672 perm/sec)   p_kst 1.092157e-03   p_cons 8.614412e-01   p_joint 4.966667e-03

Joint ci ratio: 7.359113e-02	ci left: 5.227150e-03	ci right 5.628391e-03	k: 2821	n:520000
Cons ci ratio: 2.180122e-03	ci left: 8.605042e-01	ci right 8.623841e-01	k: 447952	n:520000
KS ci ratio: 1.639566e-01	ci left: 1.008045e-03	ci right 1.189895e-03	k: 570	n:520000
COL19A1   520000 perm   196 sec   (2647 perm/sec)   p_kst 1.096154e-03   p_cons 8.614462e-01   p_joint 5.425000e-03

Joint ci ratio: 7.351639e-02	ci left: 5.139629e-03	ci right 5.533733e-03	k: 2827	n:530000
Cons ci ratio: 2.159977e-03	ci left: 8.604555e-01	ci right 8.623179e-01	k: 456536	n:530000
KS ci ratio: 1.629614e-01	ci left: 1.001692e-03	ci right 1.181192e-03	k: 577	n:530000
COL19A1   530000 perm   202 sec   (2623 perm/sec)   p_kst 1.088679e-03   p_cons 8.613887e-01   p_joint 5.333962e-03

Joint ci ratio: 7.286249e-02	ci left: 5.137166e-03	ci right 5.527430e-03	k: 2878	n:540000
Cons ci ratio: 2.139699e-03	ci left: 8.604848e-01	ci right 8.623298e-01	k: 465161	n:540000
KS ci ratio: 1.612955e-01	ci left: 1.004463e-03	ci right 1.182441e-03	k: 589	n:540000
COL19A1   540000 perm   208 sec   (2600 perm/sec)   p_kst 1.090741e-03   p_cons 8.614093e-01   p_joint 5.329630e-03

Joint ci ratio: 7.278983e-02	ci left: 5.054465e-03	ci right 5.438047e-03	k: 2884	n:550000
Cons ci ratio: 2.120402e-03	ci left: 8.604658e-01	ci right 8.622940e-01	k: 473760	n:550000
KS ci ratio: 1.603477e-01	ci left: 9.984149e-04	ci right 1.174181e-03	k: 596	n:550000
COL19A1   550000 perm   214 sec   (2575 perm/sec)   p_kst 1.083636e-03   p_cons 8.613818e-01   p_joint 5.243636e-03

Joint ci ratio: 7.220442e-02	ci left: 5.046613e-03	ci right 5.426390e-03	k: 2931	n:560000
Cons ci ratio: 2.101114e-03	ci left: 8.605048e-01	ci right 8.623165e-01	k: 482391	n:560000
KS ci ratio: 1.591528e-01	ci left: 9.960149e-04	ci right 1.169927e-03	k: 605	n:560000
COL19A1   560000 perm   219 sec   (2551 perm/sec)   p_kst 1.080357e-03   p_cons 8.614125e-01   p_joint 5.233929e-03

Joint ci ratio: 7.151235e-02	ci left: 5.056280e-03	ci right 5.432986e-03	k: 2988	n:570000
Cons ci ratio: 2.082374e-03	ci left: 8.605390e-01	ci right 8.623345e-01	k: 491020	n:570000
KS ci ratio: 1.579842e-01	ci left: 9.937038e-04	ci right 1.165818e-03	k: 614	n:570000
COL19A1   570000 perm   225 sec   (2529 perm/sec)   p_kst 1.077193e-03   p_cons 8.614386e-01   p_joint 5.242105e-03

Joint ci ratio: 7.309316e-02	ci left: 4.754069e-03	ci right 5.116420e-03	k: 2861	n:580000
Cons ci ratio: 2.063694e-03	ci left: 8.606222e-01	ci right 8.624018e-01	k: 499678	n:580000
KS ci ratio: 1.565900e-01	ci left: 9.947900e-04	ci right 1.165429e-03	k: 625	n:580000
COL19A1   580000 perm   232 sec   (2505 perm/sec)   p_kst 1.077586e-03   p_cons 8.615138e-01   p_joint 4.932759e-03

Joint ci ratio: 7.272689e-02	ci left: 4.721745e-03	ci right 5.079753e-03	k: 2890	n:590000
Cons ci ratio: 2.045958e-03	ci left: 8.606500e-01	ci right 8.624143e-01	k: 508305	n:590000
KS ci ratio: 1.552321e-01	ci left: 9.958459e-04	ci right 1.165047e-03	k: 636	n:590000
COL19A1   590000 perm   238 sec   (2482 perm/sec)   p_kst 1.077966e-03   p_cons 8.615339e-01   p_joint 4.898305e-03

Joint ci ratio: 7.351329e-02	ci left: 4.543226e-03	ci right 4.891582e-03	k: 2829	n:600000
Cons ci ratio: 2.028629e-03	ci left: 8.606819e-01	ci right 8.624313e-01	k: 516935	n:600000
KS ci ratio: 1.540279e-01	ci left: 9.952703e-04	ci right 1.162940e-03	k: 646	n:600000
COL19A1   600000 perm   244 sec   (2456 perm/sec)   p_kst 1.076667e-03   p_cons 8.615583e-01   p_joint 4.715000e-03

Joint ci ratio: 7.412382e-02	ci left: 4.394717e-03	ci right 4.734605e-03	k: 2783	n:610000
Cons ci ratio: 2.012410e-03	ci left: 8.606323e-01	ci right 8.623676e-01	k: 525516	n:610000
KS ci ratio: 1.523876e-01	ci left: 1.001026e-03	ci right 1.167705e-03	k: 660	n:610000
COL19A1   610000 perm   251 sec   (2435 perm/sec)   p_kst 1.081967e-03   p_cons 8.615016e-01   p_joint 4.562295e-03

Joint ci ratio: 7.416671e-02	ci left: 4.319079e-03	ci right 4.653319e-03	k: 2780	n:620000
Cons ci ratio: 1.995643e-03	ci left: 8.606959e-01	ci right 8.624168e-01	k: 534166	n:620000
KS ci ratio: 1.500219e-01	ci left: 1.017470e-03	ci right 1.184022e-03	k: 681	n:620000
COL19A1   620000 perm   257 sec   (2415 perm/sec)   p_kst 1.098387e-03   p_cons 8.615581e-01   p_joint 4.483871e-03

Joint ci ratio: 7.754662e-02	ci left: 3.882987e-03	ci right 4.197791e-03	k: 2544	n:630000
Cons ci ratio: 1.979380e-03	ci left: 8.607464e-01	ci right 8.624534e-01	k: 542809	n:630000
KS ci ratio: 1.493669e-01	ci left: 1.010487e-03	ci right 1.175109e-03	k: 687	n:630000
COL19A1   630000 perm   263 sec   (2394 perm/sec)   p_kst 1.090476e-03   p_cons 8.616016e-01   p_joint 4.038095e-03

Joint ci ratio: 7.689954e-02	ci left: 3.888206e-03	ci right 4.200684e-03	k: 2587	n:640000
Cons ci ratio: 1.963675e-03	ci left: 8.607751e-01	ci right 8.624685e-01	k: 551439	n:640000
KS ci ratio: 1.479751e-01	ci left: 1.014255e-03	ci right 1.177815e-03	k: 700	n:640000
COL19A1   640000 perm   270 sec   (2374 perm/sec)   p_kst 1.093750e-03   p_cons 8.616234e-01   p_joint 4.042187e-03

Joint ci ratio: 7.618122e-02	ci left: 3.902330e-03	ci right 4.212885e-03	k: 2636	n:650000
Cons ci ratio: 1.948791e-03	ci left: 8.607473e-01	ci right 8.624279e-01	k: 560033	n:650000
KS ci ratio: 1.467245e-01	ci left: 1.016432e-03	ci right 1.178836e-03	k: 712	n:650000
COL19A1   650000 perm   276 sec   (2354 perm/sec)   p_kst 1.095385e-03   p_cons 8.615892e-01   p_joint 4.055385e-03

Joint ci ratio: 6.846488e-02	ci left: 4.773165e-03	ci right 5.113021e-03	k: 3261	n:660000
Cons ci ratio: 1.933245e-03	ci left: 8.608435e-01	ci right 8.625109e-01	k: 568708	n:660000
KS ci ratio: 1.459086e-01	ci left: 1.012709e-03	ci right 1.173540e-03	k: 720	n:660000
COL19A1   660000 perm   283 sec   (2334 perm/sec)   p_kst 1.090909e-03   p_cons 8.616788e-01   p_joint 4.940909e-03

Joint ci ratio: 7.144451e-02	ci left: 4.313280e-03	ci right 4.634311e-03	k: 2996	n:670000
Cons ci ratio: 1.918773e-03	ci left: 8.608486e-01	ci right 8.625035e-01	k: 577324	n:670000
KS ci ratio: 1.444136e-01	ci left: 1.019169e-03	ci right 1.179225e-03	k: 735	n:670000
COL19A1   670000 perm   289 sec   (2315 perm/sec)   p_kst 1.097015e-03   p_cons 8.616776e-01   p_joint 4.471642e-03

Joint ci ratio: 7.104323e-02	ci left: 4.298958e-03	ci right 4.617051e-03	k: 3030	n:680000
Cons ci ratio: 1.904597e-03	ci left: 8.608566e-01	ci right 8.624992e-01	k: 585942	n:680000
KS ci ratio: 1.429637e-01	ci left: 1.025447e-03	ci right 1.184734e-03	k: 750	n:680000
COL19A1   680000 perm   296 sec   (2296 perm/sec)   p_kst 1.102941e-03   p_cons 8.616794e-01   p_joint 4.455882e-03

Joint ci ratio: 6.553885e-02	ci left: 4.988880e-03	ci right 5.328338e-03	k: 3558	n:690000
Cons ci ratio: 1.890272e-03	ci left: 8.609224e-01	ci right 8.625528e-01	k: 594600	n:690000
KS ci ratio: 1.419281e-01	ci left: 1.025959e-03	ci right 1.184074e-03	k: 761	n:690000
COL19A1   690000 perm   303 sec   (2277 perm/sec)   p_kst 1.102899e-03   p_cons 8.617391e-01   p_joint 5.156522e-03

Joint ci ratio: 6.145653e-02	ci left: 5.600936e-03	ci right 5.957459e-03	k: 4044	n:700000
Cons ci ratio: 1.876669e-03	ci left: 8.609349e-01	ci right 8.625535e-01	k: 603222	n:700000
KS ci ratio: 1.403703e-01	ci left: 1.034731e-03	ci right 1.192301e-03	k: 778	n:700000
COL19A1   700000 perm   310 sec   (2259 perm/sec)   p_kst 1.111429e-03   p_cons 8.617457e-01   p_joint 5.777143e-03

Joint ci ratio: 6.097578e-02	ci left: 5.610811e-03	ci right 5.965070e-03	k: 4108	n:710000
Cons ci ratio: 1.863268e-03	ci left: 8.609584e-01	ci right 8.625654e-01	k: 611852	n:710000
KS ci ratio: 1.390377e-01	ci left: 1.040546e-03	ci right 1.197373e-03	k: 793	n:710000
COL19A1   710000 perm   317 sec   (2240 perm/sec)   p_kst 1.116901e-03   p_cons 8.617634e-01   p_joint 5.785915e-03

Joint ci ratio: 5.981793e-02	ci left: 5.751762e-03	ci right 6.107786e-03	k: 4268	n:720000
Cons ci ratio: 1.850182e-03	ci left: 8.609770e-01	ci right 8.625728e-01	k: 620479	n:720000
KS ci ratio: 1.374873e-01	ci left: 1.050230e-03	ci right 1.206606e-03	k: 811	n:720000
COL19A1   720000 perm   324 sec   (2220 perm/sec)   p_kst 1.126389e-03   p_cons 8.617764e-01   p_joint 5.927778e-03

Joint ci ratio: 5.940191e-02	ci left: 5.753938e-03	ci right 6.107535e-03	k: 4328	n:730000
Cons ci ratio: 1.837464e-03	ci left: 8.609829e-01	ci right 8.625677e-01	k: 629097	n:730000
KS ci ratio: 1.363996e-01	ci left: 1.053041e-03	ci right 1.208495e-03	k: 824	n:730000
COL19A1   730000 perm   331 sec   (2204 perm/sec)   p_kst 1.128767e-03   p_cons 8.617767e-01   p_joint 5.928767e-03

Joint ci ratio: 5.487508e-02	ci left: 6.660666e-03	ci right 7.037805e-03	k: 5067	n:740000
Cons ci ratio: 1.766109e-03	ci left: 8.686383e-01	ci right 8.701751e-01	k: 643362	n:740000
KS ci ratio: 1.353374e-01	ci left: 1.055781e-03	ci right 1.210329e-03	k: 837	n:740000
COL19A1   740000 perm   338 sec   (2187 perm/sec)   p_kst 1.131081e-03   p_cons 8.694081e-01   p_joint 6.847297e-03

Joint ci ratio: 5.445727e-02	ci left: 6.674437e-03	ci right 7.049388e-03	k: 5145	n:750000
Cons ci ratio: 1.754739e-03	ci left: 8.685858e-01	ci right 8.701126e-01	k: 652013	n:750000
KS ci ratio: 1.347760e-01	ci left: 1.050722e-03	ci right 1.203840e-03	k: 844	n:750000
COL19A1   750000 perm   346 sec   (2170 perm/sec)   p_kst 1.125333e-03   p_cons 8.693507e-01   p_joint 6.860000e-03

Joint ci ratio: 5.268010e-02	ci left: 7.042307e-03	ci right 7.424621e-03	k: 5496	n:760000
Cons ci ratio: 1.743444e-03	ci left: 8.685533e-01	ci right 8.700702e-01	k: 660678	n:760000
KS ci ratio: 1.336730e-01	ci left: 1.054700e-03	ci right 1.207039e-03	k: 858	n:760000
COL19A1   760000 perm   353 sec   (2152 perm/sec)   p_kst 1.128947e-03   p_cons 8.693132e-01   p_joint 7.231579e-03

Joint ci ratio: 5.240961e-02	ci left: 7.023900e-03	ci right 7.403198e-03	k: 5553	n:770000
Cons ci ratio: 1.732305e-03	ci left: 8.685295e-01	ci right 8.700366e-01	k: 669349	n:770000
KS ci ratio: 1.335184e-01	ci left: 1.043512e-03	ci right 1.194047e-03	k: 860	n:770000
COL19A1   770000 perm   361 sec   (2135 perm/sec)   p_kst 1.116883e-03   p_cons 8.692844e-01   p_joint 7.211688e-03

Joint ci ratio: 5.208249e-02	ci left: 7.022421e-03	ci right 7.399201e-03	k: 5623	n:780000
Cons ci ratio: 1.720843e-03	ci left: 8.685769e-01	ci right 8.700742e-01	k: 678075	n:780000
KS ci ratio: 1.327499e-01	ci left: 1.042527e-03	ci right 1.191986e-03	k: 870	n:780000
COL19A1   780000 perm   368 sec   (2118 perm/sec)   p_kst 1.115385e-03   p_cons 8.693269e-01   p_joint 7.208974e-03

Joint ci ratio: 5.293034e-02	ci left: 6.712392e-03	ci right 7.078580e-03	k: 5446	n:790000
Cons ci ratio: 1.709843e-03	ci left: 8.685915e-01	ci right 8.700792e-01	k: 686776	n:790000
KS ci ratio: 1.319195e-01	ci left: 1.042794e-03	ci right 1.191283e-03	k: 881	n:790000
COL19A1   790000 perm   376 sec   (2102 perm/sec)   p_kst 1.115190e-03   p_cons 8.693367e-01   p_joint 6.893671e-03

Joint ci ratio: 5.300617e-02	ci left: 6.609976e-03	ci right 6.971109e-03	k: 5431	n:800000
Cons ci ratio: 1.699220e-03	ci left: 8.685832e-01	ci right 8.700616e-01	k: 695459	n:800000
KS ci ratio: 1.303757e-01	ci left: 1.055148e-03	ci right 1.203502e-03	k: 902	n:800000
COL19A1   800000 perm   383 sec   (2087 perm/sec)   p_kst 1.127500e-03   p_cons 8.693237e-01   p_joint 6.788750e-03

Joint ci ratio: 5.375571e-02	ci left: 6.346853e-03	ci right 6.698665e-03	k: 5282	n:810000
Cons ci ratio: 1.688297e-03	ci left: 8.686420e-01	ci right 8.701109e-01	k: 704196	n:810000
KS ci ratio: 1.294471e-01	ci left: 1.057650e-03	ci right 1.205215e-03	k: 915	n:810000
COL19A1   810000 perm   391 sec   (2072 perm/sec)   p_kst 1.129630e-03   p_cons 8.693778e-01   p_joint 6.520988e-03

Joint ci ratio: 5.350362e-02	ci left: 6.329609e-03	ci right 6.678769e-03	k: 5332	n:820000
Cons ci ratio: 1.678122e-03	ci left: 8.686260e-01	ci right 8.700861e-01	k: 712873	n:820000
KS ci ratio: 1.283998e-01	ci left: 1.062454e-03	ci right 1.209399e-03	k: 930	n:820000
COL19A1   820000 perm   399 sec   (2057 perm/sec)   p_kst 1.134146e-03   p_cons 8.693573e-01   p_joint 6.502439e-03

Joint ci ratio: 5.336992e-02	ci left: 6.285440e-03	ci right 6.631271e-03	k: 5359	n:830000
Cons ci ratio: 1.668155e-03	ci left: 8.686068e-01	ci right 8.700581e-01	k: 721547	n:830000
KS ci ratio: 1.279201e-01	ci left: 1.057817e-03	ci right 1.203532e-03	k: 937	n:830000
COL19A1   830000 perm   407 sec   (2042 perm/sec)   p_kst 1.128916e-03   p_cons 8.693337e-01   p_joint 6.456627e-03

Joint ci ratio: 5.301480e-02	ci left: 6.295189e-03	ci right 6.639180e-03	k: 5431	n:840000
Cons ci ratio: 1.658147e-03	ci left: 8.686179e-01	ci right 8.700605e-01	k: 730246	n:840000
KS ci ratio: 1.270427e-01	ci left: 1.060207e-03	ci right 1.205174e-03	k: 950	n:840000
COL19A1   840000 perm   414 sec   (2027 perm/sec)   p_kst 1.130952e-03   p_cons 8.693405e-01   p_joint 6.465476e-03

Joint ci ratio: 5.321438e-02	ci left: 6.174684e-03	ci right 6.513400e-03	k: 5391	n:850000
Cons ci ratio: 1.648581e-03	ci left: 8.685922e-01	ci right 8.700265e-01	k: 738914	n:850000
KS ci ratio: 1.265780e-01	ci left: 1.055707e-03	ci right 1.199492e-03	k: 957	n:850000
COL19A1   850000 perm   422 sec   (2013 perm/sec)   p_kst 1.125882e-03   p_cons 8.693106e-01   p_joint 6.342353e-03

Joint ci ratio: 5.311731e-02	ci left: 6.125828e-03	ci right 6.461232e-03	k: 5411	n:860000
Cons ci ratio: 1.639229e-03	ci left: 8.685601e-01	ci right 8.699862e-01	k: 747576	n:860000
KS ci ratio: 1.256629e-01	ci left: 1.059197e-03	ci right 1.202336e-03	k: 971	n:860000
COL19A1   860000 perm   430 sec   (1998 perm/sec)   p_kst 1.129070e-03   p_cons 8.692744e-01   p_joint 6.291860e-03

Joint ci ratio: 5.288865e-02	ci left: 6.108721e-03	ci right 6.441705e-03	k: 5458	n:870000
Cons ci ratio: 1.630018e-03	ci left: 8.685312e-01	ci right 8.699491e-01	k: 756240	n:870000
KS ci ratio: 1.247674e-01	ci left: 1.062611e-03	ci right 1.205112e-03	k: 985	n:870000
COL19A1   870000 perm   439 sec   (1983 perm/sec)   p_kst 1.132184e-03   p_cons 8.692414e-01   p_joint 6.273563e-03

Joint ci ratio: 5.256213e-02	ci left: 6.115559e-03	ci right 6.446795e-03	k: 5526	n:880000
Cons ci ratio: 1.620409e-03	ci left: 8.685803e-01	ci right 8.699900e-01	k: 764972	n:880000
KS ci ratio: 1.240150e-01	ci left: 1.063748e-03	ci right 1.205478e-03	k: 997	n:880000
COL19A1   880000 perm   447 sec   (1970 perm/sec)   p_kst 1.132955e-03   p_cons 8.692864e-01   p_joint 6.279545e-03

Joint ci ratio: 5.261671e-02	ci left: 6.034641e-03	ci right 6.361844e-03	k: 5515	n:890000
Cons ci ratio: 1.611295e-03	ci left: 8.685822e-01	ci right 8.699840e-01	k: 773663	n:890000
KS ci ratio: 1.230931e-01	ci left: 1.068129e-03	ci right 1.209308e-03	k: 1012	n:890000
COL19A1   890000 perm   455 sec   (1955 perm/sec)   p_kst 1.137079e-03   p_cons 8.692843e-01   p_joint 6.196629e-03

Joint ci ratio: 5.226693e-02	ci left: 6.048735e-03	ci right 6.374456e-03	k: 5589	n:900000
Cons ci ratio: 1.602544e-03	ci left: 8.685540e-01	ci right 8.699481e-01	k: 782327	n:900000
KS ci ratio: 1.223704e-01	ci left: 1.069185e-03	ci right 1.209613e-03	k: 1024	n:900000
COL19A1   900000 perm   464 sec   (1941 perm/sec)   p_kst 1.137778e-03   p_cons 8.692522e-01   p_joint 6.210000e-03

Joint ci ratio: 5.243889e-02	ci left: 5.943214e-03	ci right 6.264338e-03	k: 5553	n:910000
Cons ci ratio: 1.593818e-03	ci left: 8.685429e-01	ci right 8.699294e-01	k: 791006	n:910000
KS ci ratio: 1.219550e-01	ci left: 1.064892e-03	ci right 1.204248e-03	k: 1031	n:910000
COL19A1   910000 perm   472 sec   (1928 perm/sec)   p_kst 1.132967e-03   p_cons 8.692374e-01   p_joint 6.102198e-03

Joint ci ratio: 5.242640e-02	ci left: 5.881827e-03	ci right 6.199556e-03	k: 5556	n:920000
Cons ci ratio: 1.585287e-03	ci left: 8.685245e-01	ci right 8.699036e-01	k: 799678	n:920000
KS ci ratio: 1.209624e-01	ci left: 1.071235e-03	ci right 1.210198e-03	k: 1048	n:920000
COL19A1   920000 perm   480 sec   (1915 perm/sec)   p_kst 1.139130e-03   p_cons 8.692152e-01   p_joint 6.039130e-03

Joint ci ratio: 5.277315e-02	ci left: 5.742170e-03	ci right 6.054468e-03	k: 5484	n:930000
Cons ci ratio: 1.576757e-03	ci left: 8.685260e-01	ci right 8.698975e-01	k: 808368	n:930000
KS ci ratio: 1.205611e-01	ci left: 1.067015e-03	ci right 1.204939e-03	k: 1055	n:930000
COL19A1   930000 perm   489 sec   (1902 perm/sec)   p_kst 1.134409e-03   p_cons 8.692129e-01   p_joint 5.896774e-03

Joint ci ratio: 5.113152e-02	ci left: 6.054912e-03	ci right 6.373674e-03	k: 5840	n:940000
Cons ci ratio: 1.568341e-03	ci left: 8.685306e-01	ci right 8.698948e-01	k: 817061	n:940000
KS ci ratio: 1.200507e-01	ci left: 1.064950e-03	ci right 1.201983e-03	k: 1064	n:940000
COL19A1   940000 perm   498 sec   (1889 perm/sec)   p_kst 1.131915e-03   p_cons 8.692138e-01   p_joint 6.212766e-03

Joint ci ratio: 5.172002e-02	ci left: 5.855039e-03	ci right 6.166932e-03	k: 5709	n:950000
Cons ci ratio: 1.560232e-03	ci left: 8.685098e-01	ci right 8.698669e-01	k: 825730	n:950000
KS ci ratio: 1.193246e-01	ci left: 1.067015e-03	ci right 1.203424e-03	k: 1077	n:950000
COL19A1   950000 perm   506 sec   (1877 perm/sec)   p_kst 1.133684e-03   p_cons 8.691895e-01   p_joint 6.009474e-03

Joint ci ratio: 5.166706e-02	ci left: 5.806384e-03	ci right 6.115359e-03	k: 5721	n:960000
Cons ci ratio: 1.552269e-03	ci left: 8.684863e-01	ci right 8.698365e-01	k: 834396	n:960000
KS ci ratio: 1.189393e-01	ci left: 1.062974e-03	ci right 1.198398e-03	k: 1084	n:960000
COL19A1   960000 perm   515 sec   (1865 perm/sec)   p_kst 1.129167e-03   p_cons 8.691625e-01   p_joint 5.959375e-03

Joint ci ratio: 5.350548e-02	ci left: 5.355818e-03	ci right 5.651270e-03	k: 5337	n:970000
Cons ci ratio: 1.544643e-03	ci left: 8.684313e-01	ci right 8.697748e-01	k: 843031	n:970000
KS ci ratio: 1.184492e-01	ci left: 1.061019e-03	ci right 1.195597e-03	k: 1093	n:970000
COL19A1   970000 perm   523 sec   (1853 perm/sec)   p_kst 1.126804e-03   p_cons 8.691041e-01   p_joint 5.502062e-03

Joint ci ratio: 5.342654e-02	ci left: 5.317272e-03	ci right 5.610152e-03	k: 5353	n:980000
Cons ci ratio: 1.536797e-03	ci left: 8.684265e-01	ci right 8.697631e-01	k: 851714	n:980000
KS ci ratio: 1.178048e-01	ci left: 1.062075e-03	ci right 1.196004e-03	k: 1105	n:980000
COL19A1   980000 perm   532 sec   (1841 perm/sec)   p_kst 1.127551e-03   p_cons 8.690959e-01   p_joint 5.462245e-03

Joint ci ratio: 5.317893e-02	ci left: 5.313394e-03	ci right 5.604662e-03	k: 5403	n:990000
Cons ci ratio: 1.529219e-03	ci left: 8.683996e-01	ci right 8.697296e-01	k: 860375	n:990000
KS ci ratio: 1.175398e-01	ci left: 1.056249e-03	ci right 1.189122e-03	k: 1110	n:990000
COL19A1   990000 perm   541 sec   (1829 perm/sec)   p_kst 1.121212e-03   p_cons 8.690657e-01   p_joint 5.457576e-03

Joint ci ratio: 5.297381e-02	ci left: 5.301702e-03	ci right 5.591174e-03	k: 5445	n:1000000
Cons ci ratio: 1.521511e-03	ci left: 8.684093e-01	ci right 8.697326e-01	k: 869072	n:1000000
KS ci ratio: 1.170144e-01	ci left: 1.055393e-03	ci right 1.187524e-03	k: 1120	n:1000000
COL19A1   1000000 perm   550 sec   (1817 perm/sec)   p_kst 1.120000e-03   p_cons 8.690720e-01   p_joint 5.445000e-03

Joint ci ratio: 5.267943e-02	ci left: 5.308809e-03	ci right 5.597009e-03	k: 5506	n:1010000
Cons ci ratio: 1.513662e-03	ci left: 8.684575e-01	ci right 8.697740e-01	k: 877808	n:1010000
KS ci ratio: 1.164961e-01	ci left: 1.054555e-03	ci right 1.185956e-03	k: 1130	n:1010000
COL19A1   1010000 perm   560 sec   (1805 perm/sec)   p_kst 1.118812e-03   p_cons 8.691168e-01   p_joint 5.451485e-03

Joint ci ratio: 5.290833e-02	ci left: 5.211284e-03	ci right 5.495457e-03	k: 5459	n:1020000
Cons ci ratio: 1.505894e-03	ci left: 8.685107e-01	ci right 8.698205e-01	k: 886550	n:1020000
KS ci ratio: 1.161375e-01	ci left: 1.050879e-03	ci right 1.181392e-03	k: 1137	n:1020000
COL19A1   1020000 perm   569 sec   (1793 perm/sec)   p_kst 1.114706e-03   p_cons 8.691667e-01   p_joint 5.351961e-03

Joint ci ratio: 5.224527e-02	ci left: 5.293873e-03	ci right 5.578822e-03	k: 5598	n:1030000
Cons ci ratio: 1.498353e-03	ci left: 8.685463e-01	ci right 8.698496e-01	k: 895275	n:1030000
KS ci ratio: 1.153293e-01	ci left: 1.055761e-03	ci right 1.185905e-03	k: 1153	n:1030000
COL19A1   1030000 perm   579 sec   (1780 perm/sec)   p_kst 1.119417e-03   p_cons 8.691990e-01   p_joint 5.434951e-03

Joint ci ratio: 5.193514e-02	ci left: 5.306555e-03	ci right 5.590441e-03	k: 5665	n:1040000
Cons ci ratio: 1.490804e-03	ci left: 8.685996e-01	ci right 8.698964e-01	k: 904019	n:1040000
KS ci ratio: 1.148329e-01	ci left: 1.054948e-03	ci right 1.184394e-03	k: 1163	n:1040000
COL19A1   1040000 perm   588 sec   (1769 perm/sec)   p_kst 1.118269e-03   p_cons 8.692490e-01   p_joint 5.447115e-03

Joint ci ratio: 5.187210e-02	ci left: 5.269174e-03	ci right 5.550708e-03	k: 5679	n:1050000
Cons ci ratio: 1.483709e-03	ci left: 8.685994e-01	ci right 8.698900e-01	k: 912708	n:1050000
KS ci ratio: 1.143916e-01	ci left: 1.053227e-03	ci right 1.181932e-03	k: 1172	n:1050000
COL19A1   1050000 perm   597 sec   (1758 perm/sec)   p_kst 1.116190e-03   p_cons 8.692457e-01   p_joint 5.408571e-03

Joint ci ratio: 5.164086e-02	ci left: 5.266955e-03	ci right 5.547079e-03	k: 5730	n:1060000
Cons ci ratio: 1.476580e-03	ci left: 8.686200e-01	ci right 8.699044e-01	k: 921419	n:1060000
KS ci ratio: 1.136669e-01	ci left: 1.057038e-03	ci right 1.185336e-03	k: 1187	n:1060000
COL19A1   1060000 perm   607 sec   (1747 perm/sec)   p_kst 1.119811e-03   p_cons 8.692632e-01   p_joint 5.405660e-03

Joint ci ratio: 4.998539e-02	ci left: 5.572073e-03	ci right 5.858650e-03	k: 6114	n:1070000
Cons ci ratio: 1.469354e-03	ci left: 8.686711e-01	ci right 8.699493e-01	k: 930163	n:1070000
KS ci ratio: 1.131443e-01	ci left: 1.057148e-03	ci right 1.184830e-03	k: 1198	n:1070000
COL19A1   1070000 perm   617 sec   (1736 perm/sec)   p_kst 1.119626e-03   p_cons 8.693112e-01   p_joint 5.714019e-03

Joint ci ratio: 4.985978e-02	ci left: 5.548823e-03	ci right 5.833467e-03	k: 6145	n:1080000
Cons ci ratio: 1.462560e-03	ci left: 8.686703e-01	ci right 8.699426e-01	k: 938852	n:1080000
KS ci ratio: 1.124894e-01	ci left: 1.059957e-03	ci right 1.187187e-03	k: 1212	n:1080000
COL19A1   1080000 perm   626 sec   (1726 perm/sec)   p_kst 1.122222e-03   p_cons 8.693074e-01   p_joint 5.689815e-03

Joint ci ratio: 4.993877e-02	ci left: 5.480698e-03	ci right 5.762306e-03	k: 6126	n:1090000
Cons ci ratio: 1.455642e-03	ci left: 8.687035e-01	ci right 8.699698e-01	k: 947578	n:1090000
KS ci ratio: 1.119828e-01	ci left: 1.060041e-03	ci right 1.186671e-03	k: 1223	n:1090000
COL19A1   1090000 perm   635 sec   (1715 perm/sec)   p_kst 1.122018e-03   p_cons 8.693376e-01   p_joint 5.620183e-03

Joint ci ratio: 4.660990e-02	ci left: 6.240144e-03	ci right 6.538828e-03	k: 7027	n:1100000
Cons ci ratio: 1.449175e-03	ci left: 8.686805e-01	ci right 8.699412e-01	k: 956243	n:1100000
KS ci ratio: 1.116188e-01	ci left: 1.057473e-03	ci right 1.183359e-03	k: 1231	n:1100000
COL19A1   1100000 perm   645 sec   (1706 perm/sec)   p_kst 1.119091e-03   p_cons 8.693118e-01   p_joint 6.388182e-03

Joint ci ratio: 4.645849e-02	ci left: 6.224884e-03	ci right 6.521844e-03	k: 7073	n:1110000
Cons ci ratio: 1.442627e-03	ci left: 8.686842e-01	ci right 8.699391e-01	k: 964937	n:1110000
KS ci ratio: 1.112583e-01	ci left: 1.054953e-03	ci right 1.180106e-03	k: 1239	n:1110000
COL19A1   1110000 perm   655 sec   (1696 perm/sec)   p_kst 1.116216e-03   p_cons 8.693126e-01   p_joint 6.372072e-03

Joint ci ratio: 5.361621e-02	ci left: 4.622618e-03	ci right 4.878167e-03	k: 5319	n:1120000
Cons ci ratio: 1.436794e-03	ci left: 8.685885e-01	ci right 8.698382e-01	k: 973520	n:1120000
KS ci ratio: 1.120762e-01	ci left: 1.029910e-03	ci right 1.153050e-03	k: 1221	n:1120000
COL19A1   1120000 perm   665 sec   (1685 perm/sec)   p_kst 1.090179e-03   p_cons 8.692143e-01   p_joint 4.749107e-03

Joint ci ratio: 5.334600e-02	ci left: 4.628859e-03	ci right 4.883424e-03	k: 5373	n:1130000
Cons ci ratio: 1.430295e-03	ci left: 8.686115e-01	ci right 8.698556e-01	k: 982235	n:1130000
KS ci ratio: 1.114395e-01	ci left: 1.032839e-03	ci right 1.155582e-03	k: 1235	n:1130000
COL19A1   1130000 perm   675 sec   (1675 perm/sec)   p_kst 1.092920e-03   p_cons 8.692345e-01   p_joint 4.754867e-03

Joint ci ratio: 5.383237e-02	ci left: 4.505165e-03	ci right 4.755256e-03	k: 5277	n:1140000
Cons ci ratio: 1.423938e-03	ci left: 8.686254e-01	ci right 8.698640e-01	k: 990940	n:1140000
KS ci ratio: 1.109023e-01	ci left: 1.034013e-03	ci right 1.156264e-03	k: 1247	n:1140000
COL19A1   1140000 perm   685 sec   (1665 perm/sec)   p_kst 1.093860e-03   p_cons 8.692456e-01   p_joint 4.628947e-03

Joint ci ratio: 5.353873e-02	ci left: 4.515749e-03	ci right 4.765017e-03	k: 5335	n:1150000
Cons ci ratio: 1.417872e-03	ci left: 8.686059e-01	ci right 8.698392e-01	k: 999607	n:1150000
KS ci ratio: 1.101543e-01	ci left: 1.039396e-03	ci right 1.161400e-03	k: 1264	n:1150000
COL19A1   1150000 perm   695 sec   (1655 perm/sec)   p_kst 1.099130e-03   p_cons 8.692235e-01   p_joint 4.639130e-03

Joint ci ratio: 5.329453e-02	ci left: 4.518497e-03	ci right 4.766745e-03	k: 5384	n:1160000
Cons ci ratio: 1.411465e-03	ci left: 8.686542e-01	ci right 8.698819e-01	k: 1008352	n:1160000
KS ci ratio: 1.098078e-01	ci left: 1.037142e-03	ci right 1.158475e-03	k: 1272	n:1160000
COL19A1   1160000 perm   705 sec   (1646 perm/sec)   p_kst 1.096552e-03   p_cons 8.692690e-01   p_joint 4.641379e-03

Joint ci ratio: 5.341531e-02	ci left: 4.459635e-03	ci right 4.705221e-03	k: 5360	n:1170000
Cons ci ratio: 1.405201e-03	ci left: 8.686922e-01	ci right 8.699145e-01	k: 1017086	n:1170000
KS ci ratio: 1.092938e-01	ci left: 1.038253e-03	ci right 1.159110e-03	k: 1284	n:1170000
COL19A1   1170000 perm   715 sec   (1637 perm/sec)   p_kst 1.097436e-03   p_cons 8.693043e-01   p_joint 4.581197e-03

Joint ci ratio: 5.351169e-02	ci left: 4.405951e-03	ci right 4.649033e-03	k: 5341	n:1180000
Cons ci ratio: 1.398969e-03	ci left: 8.687380e-01	ci right 8.699551e-01	k: 1025830	n:1180000
KS ci ratio: 1.084111e-01	ci left: 1.046767e-03	ci right 1.167568e-03	k: 1305	n:1180000
COL19A1   1180000 perm   725 sec   (1627 perm/sec)   p_kst 1.105932e-03   p_cons 8.693475e-01   p_joint 4.526271e-03

Joint ci ratio: 5.331258e-02	ci left: 4.402091e-03	ci right 4.644028e-03	k: 5381	n:1190000
Cons ci ratio: 1.392797e-03	ci left: 8.687865e-01	ci right 8.699982e-01	k: 1034578	n:1190000
KS ci ratio: 1.079164e-01	ci left: 1.047782e-03	ci right 1.168113e-03	k: 1317	n:1190000
COL19A1   1190000 perm   735 sec   (1619 perm/sec)   p_kst 1.106723e-03   p_cons 8.693933e-01   p_joint 4.521849e-03

Joint ci ratio: 5.355906e-02	ci left: 4.325115e-03	ci right 4.563954e-03	k: 5332	n:1200000
Cons ci ratio: 1.387058e-03	ci left: 8.687766e-01	ci right 8.699833e-01	k: 1043257	n:1200000
KS ci ratio: 1.075094e-01	ci left: 1.047159e-03	ci right 1.166937e-03	k: 1327	n:1200000
COL19A1   1200000 perm   746 sec   (1609 perm/sec)   p_kst 1.105833e-03   p_cons 8.693808e-01   p_joint 4.443333e-03

Joint ci ratio: 5.286265e-02	ci left: 4.404353e-03	ci right 4.644309e-03	k: 5473	n:1210000
Cons ci ratio: 1.381273e-03	ci left: 8.687859e-01	ci right 8.699876e-01	k: 1051959	n:1210000
KS ci ratio: 1.071470e-01	ci left: 1.045743e-03	ci right 1.164930e-03	k: 1336	n:1210000
COL19A1   1210000 perm   756 sec   (1600 perm/sec)   p_kst 1.104132e-03   p_cons 8.693876e-01   p_joint 4.523140e-03

Joint ci ratio: 5.266108e-02	ci left: 4.402224e-03	ci right 4.641121e-03	k: 5515	n:1220000
Cons ci ratio: 1.375441e-03	ci left: 8.688147e-01	ci right 8.700114e-01	k: 1060685	n:1220000
KS ci ratio: 1.065508e-01	ci left: 1.049138e-03	ci right 1.168005e-03	k: 1351	n:1220000
COL19A1   1220000 perm   767 sec   (1591 perm/sec)   p_kst 1.107377e-03   p_cons 8.694139e-01   p_joint 4.520492e-03

Joint ci ratio: 5.280166e-02	ci left: 4.343164e-03	ci right 4.579504e-03	k: 5486	n:1230000
Cons ci ratio: 1.369716e-03	ci left: 8.688374e-01	ci right 8.700291e-01	k: 1069404	n:1230000
KS ci ratio: 1.061590e-01	ci left: 1.048522e-03	ci right 1.166855e-03	k: 1361	n:1230000
COL19A1   1230000 perm   777 sec   (1582 perm/sec)   p_kst 1.106504e-03   p_cons 8.694341e-01   p_joint 4.460163e-03

Joint ci ratio: 5.257214e-02	ci left: 4.346338e-03	ci right 4.581792e-03	k: 5534	n:1240000
Cons ci ratio: 1.364135e-03	ci left: 8.688477e-01	ci right 8.700345e-01	k: 1078108	n:1240000
KS ci ratio: 1.058101e-01	ci left: 1.047132e-03	ci right 1.164896e-03	k: 1370	n:1240000
COL19A1   1240000 perm   788 sec   (1573 perm/sec)   p_kst 1.104839e-03   p_cons 8.694419e-01   p_joint 4.462903e-03

Joint ci ratio: 5.232676e-02	ci left: 4.352622e-03	ci right 4.587283e-03	k: 5586	n:1250000
Cons ci ratio: 1.358674e-03	ci left: 8.688489e-01	ci right 8.700310e-01	k: 1086801	n:1250000
KS ci ratio: 1.051598e-01	ci left: 1.051996e-03	ci right 1.169535e-03	k: 1387	n:1250000
COL19A1   1250000 perm   800 sec   (1563 perm/sec)   p_kst 1.109600e-03   p_cons 8.694408e-01   p_joint 4.468800e-03

Joint ci ratio: 5.235122e-02	ci left: 4.314159e-03	ci right 4.546858e-03	k: 5581	n:1260000
Cons ci ratio: 1.353217e-03	ci left: 8.688605e-01	ci right 8.700378e-01	k: 1095507	n:1260000
KS ci ratio: 1.046707e-01	ci left: 1.053694e-03	ci right 1.170841e-03	k: 1400	n:1260000
COL19A1   1260000 perm   810 sec   (1555 perm/sec)   p_kst 1.111111e-03   p_cons 8.694500e-01   p_joint 4.429365e-03

Joint ci ratio: 5.223946e-02	ci left: 4.298839e-03	ci right 4.530202e-03	k: 5605	n:1270000
Cons ci ratio: 1.347788e-03	ci left: 8.688782e-01	ci right 8.700508e-01	k: 1104221	n:1270000
KS ci ratio: 1.042253e-01	ci left: 1.054599e-03	ci right 1.171317e-03	k: 1412	n:1270000
COL19A1   1270000 perm   821 sec   (1547 perm/sec)   p_kst 1.111811e-03   p_cons 8.694654e-01   p_joint 4.413386e-03

Joint ci ratio: 5.203566e-02	ci left: 4.299181e-03	ci right 4.529633e-03	k: 5649	n:1280000
Cons ci ratio: 1.342627e-03	ci left: 8.688612e-01	ci right 8.700293e-01	k: 1112891	n:1280000
KS ci ratio: 1.038585e-01	ci left: 1.053969e-03	ci right 1.170182e-03	k: 1422	n:1280000
COL19A1   1280000 perm   832 sec   (1538 perm/sec)   p_kst 1.110937e-03   p_cons 8.694461e-01   p_joint 4.413281e-03

Joint ci ratio: 5.304066e-02	ci left: 4.104426e-03	ci right 4.328817e-03	k: 5438	n:1290000
Cons ci ratio: 1.337342e-03	ci left: 8.688756e-01	ci right 8.700391e-01	k: 1121601	n:1290000
KS ci ratio: 1.036404e-01	ci left: 1.050329e-03	ci right 1.165883e-03	k: 1428	n:1290000
COL19A1   1290000 perm   843 sec   (1530 perm/sec)   p_kst 1.106977e-03   p_cons 8.694581e-01   p_joint 4.215504e-03

Joint ci ratio: 5.286127e-02	ci left: 4.100938e-03	ci right 4.324357e-03	k: 5475	n:1300000
Cons ci ratio: 1.332209e-03	ci left: 8.688743e-01	ci right 8.700333e-01	k: 1130291	n:1300000
KS ci ratio: 1.033157e-01	ci left: 1.048994e-03	ci right 1.164017e-03	k: 1437	n:1300000
COL19A1   1300000 perm   854 sec   (1521 perm/sec)   p_kst 1.105385e-03   p_cons 8.694546e-01   p_joint 4.211538e-03

Joint ci ratio: 5.264055e-02	ci left: 4.104284e-03	ci right 4.326924e-03	k: 5521	n:1310000
Cons ci ratio: 1.326925e-03	ci left: 8.689090e-01	ci right 8.700634e-01	k: 1139028	n:1310000
KS ci ratio: 1.028872e-01	ci left: 1.049910e-03	ci right 1.164528e-03	k: 1449	n:1310000
COL19A1   1310000 perm   866 sec   (1514 perm/sec)   p_kst 1.106107e-03   p_cons 8.694870e-01   p_joint 4.214504e-03

Joint ci ratio: 5.089819e-02	ci left: 4.359602e-03	ci right 4.588035e-03	k: 5904	n:1320000
Cons ci ratio: 1.321893e-03	ci left: 8.689105e-01	ci right 8.700606e-01	k: 1147722	n:1320000
KS ci ratio: 1.025343e-01	ci left: 1.049337e-03	ci right 1.163476e-03	k: 1459	n:1320000
COL19A1   1320000 perm   877 sec   (1506 perm/sec)   p_kst 1.105303e-03   p_cons 8.694864e-01   p_joint 4.472727e-03

Joint ci ratio: 5.054348e-02	ci left: 4.388440e-03	ci right 4.616734e-03	k: 5987	n:1330000
Cons ci ratio: 1.360278e-03	ci left: 8.613682e-01	ci right 8.625415e-01	k: 1146401	n:1330000
KS ci ratio: 1.022198e-01	ci left: 1.048041e-03	ci right 1.161668e-03	k: 1468	n:1330000
COL19A1   1330000 perm   889 sec   (1497 perm/sec)   p_kst 1.103759e-03   p_cons 8.619556e-01   p_joint 4.501504e-03

Joint ci ratio: 5.036301e-02	ci left: 4.387375e-03	ci right 4.614775e-03	k: 6030	n:1340000
Cons ci ratio: 1.355208e-03	ci left: 8.613678e-01	ci right 8.625366e-01	k: 1155017	n:1340000
KS ci ratio: 1.018737e-01	ci left: 1.047492e-03	ci right 1.160652e-03	k: 1478	n:1340000
COL19A1   1340000 perm   900 sec   (1488 perm/sec)   p_kst 1.102985e-03   p_cons 8.619530e-01   p_joint 4.500000e-03

Joint ci ratio: 5.124618e-02	ci left: 4.204942e-03	ci right 4.426822e-03	k: 5825	n:1350000
Cons ci ratio: 1.349879e-03	ci left: 8.614230e-01	ci right 8.625873e-01	k: 1163708	n:1350000
KS ci ratio: 1.014288e-01	ci left: 1.049118e-03	ci right 1.161929e-03	k: 1491	n:1350000
COL19A1   1350000 perm   912 sec   (1480 perm/sec)   p_kst 1.104444e-03   p_cons 8.620059e-01   p_joint 4.314815e-03

Joint ci ratio: 5.104938e-02	ci left: 4.206689e-03	ci right 4.427783e-03	k: 5870	n:1360000
Cons ci ratio: 1.344795e-03	ci left: 8.614450e-01	ci right 8.626049e-01	k: 1172355	n:1360000
KS ci ratio: 1.007554e-01	ci left: 1.055738e-03	ci right 1.168463e-03	k: 1511	n:1360000
COL19A1   1360000 perm   924 sec   (1473 perm/sec)   p_kst 1.111029e-03   p_cons 8.620257e-01   p_joint 4.316176e-03

Joint ci ratio: 5.086345e-02	ci left: 4.206970e-03	ci right 4.427250e-03	k: 5913	n:1370000
Cons ci ratio: 1.339780e-03	ci left: 8.614645e-01	ci right 8.626201e-01	k: 1180999	n:1370000
KS ci ratio: 1.003909e-01	ci left: 1.055859e-03	ci right 1.168165e-03	k: 1522	n:1370000
COL19A1   1370000 perm   935 sec   (1465 perm/sec)   p_kst 1.110949e-03   p_cons 8.620431e-01   p_joint 4.316058e-03

Joint ci ratio: 5.137717e-02	ci left: 4.092780e-03	ci right 4.309309e-03	k: 5796	n:1380000
Cons ci ratio: 1.334752e-03	ci left: 8.614960e-01	ci right 8.626474e-01	k: 1189660	n:1380000
KS ci ratio: 9.996512e-02	ci left: 1.057392e-03	ci right 1.169356e-03	k: 1535	n:1380000
COL19A1   1380000 perm   947 sec   (1457 perm/sec)   p_kst 1.112319e-03   p_cons 8.620725e-01   p_joint 4.200000e-03

Outputting figure to mutsig2_images.part000000000041/COL19A1.4_3629_1380000_0.0011123_0.86207_0.0042.png
                gene_name: COL19A1
               theta_stop: 0.100 
                    nperm: 1380000 
                     p_ks: 0.0011 
        ci_ks_bounds_left: 0.0011 
       ci_ks_bounds_right: 0.0012 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.0042 
     ci_joint_bounds_left: 0.0041 
    ci_joint_bounds_right: 0.0043 

Current progress: 60 percent done.
COL4A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.475109e-02	ci left: 2.594365e-01	ci right 2.768988e-01	k: 2681	n:10000
Cons ci ratio: 3.693905e-02	ci left: 5.197599e-01	ci right 5.394228e-01	k: 5296	n:10000
KS ci ratio: 1.029581e-01	ci left: 1.200443e-01	ci right 1.331741e-01	k: 1265	n:10000
COL4A2   10000 perm   2 sec   (5086 perm/sec)   p_kst 1.265000e-01   p_cons 5.296000e-01   p_joint 2.681000e-01

Joint ci ratio: 5.392387e-02	ci left: 2.033331e-01	ci right 2.146516e-01	k: 4179	n:20000
Cons ci ratio: 2.723024e-02	ci left: 5.018957e-01	ci right 5.158017e-01	k: 10177	n:20000
KS ci ratio: 7.320138e-02	ci left: 1.207908e-01	ci right 1.300185e-01	k: 2507	n:20000
COL4A2   20000 perm   4 sec   (4606 perm/sec)   p_kst 1.253500e-01   p_cons 5.088500e-01   p_joint 2.089500e-01

Outputting figure to mutsig2_images.part000000000041/COL4A2.4_5327_20000_0.12535_0.50885_0.20895.png
                gene_name: COL4A2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 62 percent done.
COL4A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.173246e-02	ci left: 7.564621e-01	ci right 7.731834e-01	k: 7649	n:10000
KS ci ratio: 1.302694e-02	ci left: 8.945686e-01	ci right 9.063969e-01	k: 9006	n:10000
COL4A3   10000 perm   2 sec   (4901 perm/sec)   p_kst 9.006000e-01   p_cons 7.649000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COL4A3.4_5295_10000_0.9006_0.7649_1.png
                gene_name: COL4A3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
COLEC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.827232e-02	ci left: 5.020507e-01	ci right 5.217424e-01	k: 5119	n:10000
Cons ci ratio: 1.434813e-02	ci left: 8.754132e-01	ci right 8.881634e-01	k: 8819	n:10000
KS ci ratio: 5.679055e-02	ci left: 3.134405e-01	ci right 3.318629e-01	k: 3226	n:10000
COLEC11   10000 perm   1 sec   (7073 perm/sec)   p_kst 3.226000e-01   p_cons 8.819000e-01   p_joint 5.119000e-01

Outputting figure to mutsig2_images.part000000000041/COLEC11.4_923_10000_0.3226_0.8819_0.5119.png
                gene_name: COLEC11
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 65 percent done.
COMMD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.191388e-02	ci left: 9.098768e-01	ci right 9.208798e-01	k: 9155	n:10000
KS ci ratio: 1.398780e-02	ci left: 8.807342e-01	ci right 8.932393e-01	k: 8871	n:10000
COMMD5   10000 perm   2 sec   (6426 perm/sec)   p_kst 8.871000e-01   p_cons 9.155000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COMMD5.4_679_10000_0.8871_0.9155_1.png
                gene_name: COMMD5
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
COBRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.546746e-02	ci left: 5.399856e-01	ci right 5.595854e-01	k: 5498	n:10000
Cons ci ratio: 5.205220e-02	ci left: 3.523733e-01	ci right 3.713072e-01	k: 3618	n:10000
KS ci ratio: 5.087845e-02	ci left: 3.629130e-01	ci right 3.819614e-01	k: 3724	n:10000
COBRA1   10000 perm   1 sec   (6759 perm/sec)   p_kst 3.724000e-01   p_cons 3.618000e-01   p_joint 5.498000e-01

Outputting figure to mutsig2_images.part000000000041/COBRA1.3_1795_10000_0.3724_0.3618_0.5498.png
                gene_name: COBRA1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 68 percent done.
COG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.843462e-02	ci left: 6.457901e-01	ci right 6.645195e-01	k: 6552	n:10000
Cons ci ratio: 4.733738e-02	ci left: 3.970506e-01	ci right 4.164037e-01	k: 4067	n:10000
KS ci ratio: 3.039364e-02	ci left: 6.149237e-01	ci right 6.340038e-01	k: 6245	n:10000
COG3   10000 perm   2 sec   (6200 perm/sec)   p_kst 6.245000e-01   p_cons 4.067000e-01   p_joint 6.552000e-01

Outputting figure to mutsig2_images.part000000000041/COG3.3_2579_10000_0.6245_0.4067_0.6552.png
                gene_name: COG3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 70 percent done.
COG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.011813e-01	ci left: 1.238583e-01	ci right 1.371578e-01	k: 1304	n:10000
Cons ci ratio: 6.809499e-02	ci left: 2.403508e-01	ci right 2.573957e-01	k: 2488	n:10000
KS ci ratio: 1.670282e-01	ci left: 4.782537e-02	ci right 5.663779e-02	k: 521	n:10000
COG5   10000 perm   2 sec   (6164 perm/sec)   p_kst 5.210000e-02   p_cons 2.488000e-01   p_joint 1.304000e-01

Joint ci ratio: 7.568944e-02	ci left: 1.137564e-01	ci right 1.227549e-01	k: 2364	n:20000
Cons ci ratio: 4.888966e-02	ci left: 2.372669e-01	ci right 2.492078e-01	k: 4864	n:20000
KS ci ratio: 1.191363e-01	ci left: 4.828298e-02	ci right 5.444828e-02	k: 1026	n:20000
COG5   20000 perm   4 sec   (5482 perm/sec)   p_kst 5.130000e-02   p_cons 2.432000e-01   p_joint 1.182000e-01

Joint ci ratio: 5.291659e-02	ci left: 1.505260e-01	ci right 1.587410e-01	k: 4638	n:30000
Cons ci ratio: 3.867720e-02	ci left: 2.501082e-01	ci right 2.600059e-01	k: 7651	n:30000
KS ci ratio: 9.709255e-02	ci left: 4.902588e-02	ci right 5.406141e-02	k: 1545	n:30000
COG5   30000 perm   6 sec   (5176 perm/sec)   p_kst 5.150000e-02   p_cons 2.550333e-01   p_joint 1.546000e-01

Outputting figure to mutsig2_images.part000000000041/COG5.3_2675_30000_0.0515_0.25503_0.1546.png
                gene_name: COG5
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 71 percent done.
COL13A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.079994e-01	ci left: 1.100791e-01	ci right 1.227454e-01	k: 1163	n:10000
Cons ci ratio: 5.000832e-02	ci left: 3.709701e-01	ci right 3.900995e-01	k: 3805	n:10000
KS ci ratio: 2.152427e-01	ci left: 2.863733e-02	ci right 3.563870e-02	k: 320	n:10000
COL13A1   10000 perm   2 sec   (6499 perm/sec)   p_kst 3.200000e-02   p_cons 3.805000e-01   p_joint 1.163000e-01

Joint ci ratio: 9.559662e-02	ci left: 7.383094e-02	ci right 8.129243e-02	k: 1550	n:20000
Cons ci ratio: 3.562874e-02	ci left: 3.702767e-01	ci right 3.837591e-01	k: 7540	n:20000
KS ci ratio: 1.560097e-01	ci left: 2.820837e-02	ci right 3.302937e-02	k: 611	n:20000
COL13A1   20000 perm   4 sec   (5643 perm/sec)   p_kst 3.055000e-02   p_cons 3.770000e-01   p_joint 7.750000e-02

Joint ci ratio: 8.458987e-02	ci left: 6.396742e-02	ci right 6.965016e-02	k: 2003	n:30000
Cons ci ratio: 2.926798e-02	ci left: 3.686866e-01	ci right 3.796711e-01	k: 11225	n:30000
KS ci ratio: 1.241412e-01	ci left: 3.016648e-02	ci right 3.419145e-02	k: 964	n:30000
COL13A1   30000 perm   6 sec   (5336 perm/sec)   p_kst 3.213333e-02   p_cons 3.741667e-01   p_joint 6.676667e-02

Joint ci ratio: 7.900638e-02	ci left: 5.567994e-02	ci right 6.028450e-02	k: 2318	n:40000
Cons ci ratio: 2.532921e-02	ci left: 3.697537e-01	ci right 3.792645e-01	k: 14980	n:40000
KS ci ratio: 1.063064e-01	ci left: 3.112472e-02	ci right 3.464352e-02	k: 1314	n:40000
COL13A1   40000 perm   8 sec   (5141 perm/sec)   p_kst 3.285000e-02   p_cons 3.745000e-01   p_joint 5.795000e-02

Joint ci ratio: 6.681893e-02	ci left: 6.224410e-02	ci right 6.656664e-02	k: 3219	n:50000
Cons ci ratio: 2.184021e-02	ci left: 3.875376e-01	ci right 3.961150e-01	k: 19591	n:50000
KS ci ratio: 9.555795e-02	ci left: 3.100198e-02	ci right 3.413260e-02	k: 1627	n:50000
COL13A1   50000 perm   10 sec   (4905 perm/sec)   p_kst 3.254000e-02   p_cons 3.918200e-01   p_joint 6.438000e-02

Outputting figure to mutsig2_images.part000000000041/COL13A1.3_2314_50000_0.03254_0.39182_0.06438.png
                gene_name: COL13A1
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.067 

Current progress: 73 percent done.
COL18A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.039364e-02	ci left: 6.149237e-01	ci right 6.340038e-01	k: 6245	n:10000
Cons ci ratio: 1.072702e-02	ci left: 9.252359e-01	ci right 9.353117e-01	k: 9304	n:10000
KS ci ratio: 5.966541e-02	ci left: 2.924153e-01	ci right 3.105005e-01	k: 3014	n:10000
COL18A1   10000 perm   2 sec   (4926 perm/sec)   p_kst 3.014000e-01   p_cons 9.304000e-01   p_joint 6.245000e-01

Outputting figure to mutsig2_images.part000000000041/COL18A1.3_5538_10000_0.3014_0.9304_0.6245.png
                gene_name: COL18A1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 75 percent done.
COL23A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.203653e-02	ci left: 9.082308e-01	ci right 9.193268e-01	k: 9139	n:10000
Cons ci ratio: 3.463711e-02	ci left: 5.517079e-01	ci right 5.712563e-01	k: 5615	n:10000
KS ci ratio: 3.947729e-02	ci left: 4.865527e-01	ci right 5.062494e-01	k: 4964	n:10000
COL23A1   10000 perm   2 sec   (6614 perm/sec)   p_kst 4.964000e-01   p_cons 5.615000e-01   p_joint 9.139000e-01

Outputting figure to mutsig2_images.part000000000041/COL23A1.3_1739_10000_0.4964_0.5615_0.9139.png
                gene_name: COL23A1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 76 percent done.
COL4A3BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.360087e-02	ci left: 5.666442e-01	ci right 5.861113e-01	k: 5764	n:10000
Cons ci ratio: 4.855515e-02	ci left: 3.849027e-01	ci right 4.041588e-01	k: 3945	n:10000
KS ci ratio: 3.491220e-02	ci left: 5.477998e-01	ci right 5.673666e-01	k: 5576	n:10000
COL4A3BP   10000 perm   2 sec   (6524 perm/sec)   p_kst 5.576000e-01   p_cons 3.945000e-01   p_joint 5.764000e-01

Outputting figure to mutsig2_images.part000000000041/COL4A3BP.3_2331_10000_0.5576_0.3945_0.5764.png
                gene_name: COL4A3BP
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 78 percent done.
COLEC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.779280e-02	ci left: 3.059006e-01	ci right 3.242072e-01	k: 3150	n:10000
Cons ci ratio: 5.257462e-02	ci left: 3.478011e-01	ci right 3.666822e-01	k: 3572	n:10000
KS ci ratio: 7.162196e-02	ci left: 2.221762e-01	ci right 2.387810e-01	k: 2304	n:10000
COLEC10   10000 perm   2 sec   (6597 perm/sec)   p_kst 2.304000e-01   p_cons 3.572000e-01   p_joint 3.150000e-01

Outputting figure to mutsig2_images.part000000000041/COLEC10.3_858_10000_0.2304_0.3572_0.315.png
                gene_name: COLEC10
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 79 percent done.
COMMD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.302402e-02	ci left: 3.439253e-01	ci right 3.627602e-01	k: 3533	n:10000
Cons ci ratio: 1.253417e-02	ci left: 9.014466e-01	ci right 9.129149e-01	k: 9073	n:10000
KS ci ratio: 1.050099e-01	ci left: 1.158415e-01	ci right 1.287794e-01	k: 1222	n:10000
COMMD2   10000 perm   1 sec   (7512 perm/sec)   p_kst 1.222000e-01   p_cons 9.073000e-01   p_joint 3.533000e-01

Joint ci ratio: 4.677458e-02	ci left: 2.537823e-01	ci right 2.659875e-01	k: 5197	n:20000
Cons ci ratio: 9.122405e-03	ci left: 8.981015e-01	ci right 9.063812e-01	k: 18046	n:20000
KS ci ratio: 7.427185e-02	ci left: 1.176911e-01	ci right 1.268191e-01	k: 2444	n:20000
COMMD2   20000 perm   3 sec   (6384 perm/sec)   p_kst 1.222000e-01   p_cons 9.023000e-01   p_joint 2.598500e-01

Outputting figure to mutsig2_images.part000000000041/COMMD2.3_620_20000_0.1222_0.9023_0.25985.png
                gene_name: COMMD2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 81 percent done.
COPS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.071875e-02	ci left: 9.253392e-01	ci right 9.354083e-01	k: 9305	n:10000
Cons ci ratio: 1.717997e-02	ci left: 8.315462e-01	ci right 8.460558e-01	k: 8389	n:10000
KS ci ratio: 1.085878e-02	ci left: 9.235838e-01	ci right 9.337648e-01	k: 9288	n:10000
COPS4   10000 perm   1 sec   (6958 perm/sec)   p_kst 9.288000e-01   p_cons 8.389000e-01   p_joint 9.305000e-01

Outputting figure to mutsig2_images.part000000000041/COPS4.3_1261_10000_0.9288_0.8389_0.9305.png
                gene_name: COPS4
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 83 percent done.
COCH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.610965e-02	ci left: 5.310723e-01	ci right 5.507039e-01	k: 5409	n:10000
Cons ci ratio: 5.977892e-02	ci left: 2.916223e-01	ci right 3.096939e-01	k: 3006	n:10000
KS ci ratio: 4.555967e-02	ci left: 4.155831e-01	ci right 4.350604e-01	k: 4253	n:10000
COCH   10000 perm   1 sec   (6767 perm/sec)   p_kst 4.253000e-01   p_cons 3.006000e-01   p_joint 5.409000e-01

Outputting figure to mutsig2_images.part000000000041/COCH.2_1697_10000_0.4253_0.3006_0.5409.png
                gene_name: COCH
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 84 percent done.
COL9A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.347477e-03	ci left: 9.525257e-01	ci right 9.606056e-01	k: 9567	n:10000
Cons ci ratio: 3.219686e-02	ci left: 5.874096e-01	ci right 6.067338e-01	k: 5971	n:10000
KS ci ratio: 1.146199e-02	ci left: 9.158488e-01	ci right 9.265043e-01	k: 9213	n:10000
COL9A2   10000 perm   1 sec   (6771 perm/sec)   p_kst 9.213000e-01   p_cons 5.971000e-01   p_joint 9.567000e-01

Outputting figure to mutsig2_images.part000000000041/COL9A2.2_2198_10000_0.9213_0.5971_0.9567.png
                gene_name: COL9A2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 86 percent done.
COMMD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.276542e-02	ci left: 4.467012e-01	ci right 4.663241e-01	k: 4565	n:10000
Cons ci ratio: 6.578961e-02	ci left: 2.533030e-01	ci right 2.706359e-01	k: 2619	n:10000
KS ci ratio: 2.963379e-02	ci left: 6.267827e-01	ci right 6.457378e-01	k: 6363	n:10000
COMMD10   10000 perm   1 sec   (7939 perm/sec)   p_kst 6.363000e-01   p_cons 2.619000e-01   p_joint 4.565000e-01

Outputting figure to mutsig2_images.part000000000041/COMMD10.2_637_10000_0.6363_0.2619_0.4565.png
                gene_name: COMMD10
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 87 percent done.
COMMD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.409920e-02	ci left: 8.790966e-01	ci right 8.916780e-01	k: 8855	n:10000
Cons ci ratio: 1.799927e-02	ci left: 8.183233e-01	ci right 8.332864e-01	k: 8259	n:10000
KS ci ratio: 5.707758e-02	ci left: 3.112576e-01	ci right 3.296471e-01	k: 3204	n:10000
COMMD8   10000 perm   1 sec   (7827 perm/sec)   p_kst 3.204000e-01   p_cons 8.259000e-01   p_joint 8.855000e-01

Outputting figure to mutsig2_images.part000000000041/COMMD8.2_572_10000_0.3204_0.8259_0.8855.png
                gene_name: COMMD8
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 89 percent done.
COMP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.019297e-02	ci left: 7.821871e-01	ci right 7.982435e-01	k: 7903	n:10000
KS ci ratio: 3.475682e-02	ci left: 5.500043e-01	ci right 5.695609e-01	k: 5598	n:10000
COMP   10000 perm   1 sec   (6701 perm/sec)   p_kst 5.598000e-01   p_cons 7.903000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COMP.2_2350_10000_0.5598_0.7903_1.png
                gene_name: COMP
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
COPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.784120e-02	ci left: 3.919717e-01	ci right 4.112857e-01	k: 4016	n:10000
KS ci ratio: 3.778521e-02	ci left: 5.084526e-01	ci right 5.281367e-01	k: 5183	n:10000
COPA   10000 perm   2 sec   (6094 perm/sec)   p_kst 5.183000e-01   p_cons 4.016000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COPA.2_3834_10000_0.5183_0.4016_1.png
                gene_name: COPA
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
COPE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.918628e-02	ci left: 4.902514e-01	ci right 5.099486e-01	k: 5001	n:10000
KS ci ratio: 3.808897e-02	ci left: 5.044512e-01	ci right 5.241404e-01	k: 5143	n:10000
COPE   10000 perm   1 sec   (7538 perm/sec)   p_kst 5.143000e-01   p_cons 5.001000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COPE.2_967_10000_0.5143_0.5001_1.png
                gene_name: COPE
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
COPG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.535019e-02	ci left: 2.558748e-01	ci right 2.732625e-01	k: 2645	n:10000
Cons ci ratio: 9.751082e-03	ci left: 9.370311e-01	ci right 9.463095e-01	k: 9418	n:10000
KS ci ratio: 6.939426e-02	ci left: 2.334341e-01	ci right 2.503165e-01	k: 2418	n:10000
COPG   10000 perm   2 sec   (6383 perm/sec)   p_kst 2.418000e-01   p_cons 9.418000e-01   p_joint 2.645000e-01

Outputting figure to mutsig2_images.part000000000041/COPG.2_2721_10000_0.2418_0.9418_0.2645.png
                gene_name: COPG
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 95 percent done.
COPS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.271941e-02	ci left: 8.988792e-01	ci right 9.104838e-01	k: 9048	n:10000
KS ci ratio: 5.932719e-02	ci left: 2.947944e-01	ci right 3.129200e-01	k: 3038	n:10000
COPS3   10000 perm   1 sec   (7226 perm/sec)   p_kst 3.038000e-01   p_cons 9.048000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000041/COPS3.2_1320_10000_0.3038_0.9048_1.png
                gene_name: COPS3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
COPS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.576556e-02	ci left: 1.365853e-01	ci right 1.504231e-01	k: 1434	n:10000
Cons ci ratio: 8.643025e-02	ci left: 1.631759e-01	ci right 1.780165e-01	k: 1705	n:10000
KS ci ratio: 3.489805e-02	ci left: 5.480002e-01	ci right 5.675661e-01	k: 5578	n:10000
COPS6   10000 perm   1 sec   (7413 perm/sec)   p_kst 5.578000e-01   p_cons 1.705000e-01   p_joint 1.434000e-01

Outputting figure to mutsig2_images.part000000000041/COPS6.2_1024_10000_0.5578_0.1705_0.1434.png
                gene_name: COPS6
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 98 percent done.
COQ10B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.081572e-01	ci left: 1.097862e-01	ci right 1.224384e-01	k: 1160	n:10000
Cons ci ratio: 1.313289e-01	ci left: 7.640391e-02	ci right 8.724117e-02	k: 817	n:10000
KS ci ratio: 8.938381e-02	ci left: 1.540423e-01	ci right 1.685555e-01	k: 1612	n:10000
COQ10B   10000 perm   2 sec   (5921 perm/sec)   p_kst 1.612000e-01   p_cons 8.170000e-02   p_joint 1.160000e-01

Joint ci ratio: 7.935020e-02	ci left: 1.044183e-01	ci right 1.130958e-01	k: 2174	n:20000
Cons ci ratio: 9.132389e-02	ci left: 8.048507e-02	ci right 8.823627e-02	k: 1686	n:20000
KS ci ratio: 6.322824e-02	ci left: 1.560790e-01	ci right 1.663197e-01	k: 3223	n:20000
COQ10B   20000 perm   3 sec   (5926 perm/sec)   p_kst 1.611500e-01   p_cons 8.430000e-02   p_joint 1.087000e-01

Outputting figure to mutsig2_images.part000000000041/COQ10B.2_737_20000_0.16115_0.0843_0.1087.png
                gene_name: COQ10B
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000041
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 41 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1644>
Subject: Job 9893894: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1644>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000042> was used as the working directory.
Started at Sat Oct  6 00:03:54 2012
Results reported at Sat Oct  6 00:13:18 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000042.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000042.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 42  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000042.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    571.12 sec.
    Max Memory :      3626 MB
    Max Swap   :      5921 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
42
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 42
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 42: processing genes 3697 - 3786
Calculating significance of each gene.
Using projection method.
3697	COQ2	9.739653e-02
3698	COQ3	1
3699	COQ4	1
3700	COQ5	1
3701	COQ6	8.137507e-01
3702	COQ7	7.447628e-01
3703	COQ9	2.551212e-01
3704	CORIN	2.431330e-02
3705	CORO1A	9.045345e-01
3706	CORO1B	1
3707	CORO1C	1
3708	CORO2A	1.179757e-01
3709	CORO2B	3.341375e-02
3710	CORO6	6.789473e-01
3711	CORO7	9.945185e-01
3712	CORT	1
3713	COTL1	1
3714	COX10	6.436727e-01
3715	COX11	5.884882e-01
3716	COX15	7.170598e-01
3717	COX16	3.712891e-01
3718	COX17	9.864964e-02
3719	COX18	3.121688e-01
3720	COX19	1
3721	COX4I1	1.516025e-01
3722	COX4I2	3.373620e-01
3723	COX4NB	1
3724	COX5A	1
3725	COX5B	1
3726	COX6A1	1
3727	COX6A2	1.177284e-01
3728	COX6B1	1
3729	COX6B2	1
3730	COX6C	3.158623e-01
3731	COX7A1	3.546939e-01
3732	COX7A2	1
3733	COX7A2L	1
3734	COX7B	1
3735	COX7B2	1.447685e-01
3736	COX7C	1
3737	COX8A	1
3738	COX8C	2.072039e-01
3739	CP	8.371495e-01
3740	CP110	9.626420e-01
3741	CPA1	8.456275e-02
3742	CPA2	1
3743	CPA3	3.963515e-01
3744	CPA4	6.126621e-01
3745	CPA5	6.912483e-02
3746	CPA6	8.709322e-02
3747	CPAMD8	9.126850e-01
3748	CPB1	6.057799e-03
3749	CPB2	7.214742e-01
3750	CPD	4.652902e-01
3751	CPE	6.671197e-02
3752	CPEB1	4.579493e-01
3753	CPEB2	4.970949e-01
3754	CPEB3	3.964903e-01
3755	CPEB4	6.850967e-01
3756	CPLX1	1
3757	CPLX2	1
3758	CPLX3	6.810118e-01
3759	CPLX4	7.081437e-02
3760	CPM	7.984382e-01
3761	CPN1	1.088453e-01
3762	CPN2	9.095871e-01
3763	CPNE1	3.824745e-01
3764	CPNE2	7.315043e-01
3765	CPNE3	5.981395e-01
3766	CPNE4	9.765920e-02
3767	CPNE5	9.244505e-01
3768	CPNE6	7.080155e-01
3769	CPNE7	1
3770	CPNE8	7.292272e-01
3771	CPNE9	7.427062e-01
3772	CPO	3.583115e-01
3773	CPOX	5.621737e-01
3774	CPPED1	6.811432e-01
3775	CPS1	2.259783e-01
3776	CPSF1	8.677764e-01
3777	CPSF2	8.956323e-01
3778	CPSF3	8.410693e-01
3779	CPSF3L	1
3780	CPSF4	7.911101e-02
3781	CPSF6	9.933831e-02
3782	CPSF7	1.483172e-01
3783	CPT1A	2.670336e-01
3784	CPT1B	5.405650e-01
3785	CPT1C	1
3786	CPT2	8.123116e-01
Done

Running MutSig 2:
Scatter job 42: processing genes 3697 - 3786
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.522196e-02	ci left: 6.981718e-01	ci right 7.161074e-01	k: 7072	n:10000
Cons ci ratio: 2.587498e-02	ci left: 6.873824e-01	ci right 7.055030e-01	k: 6965	n:10000
KS ci ratio: 5.031728e-02	ci left: 3.680851e-01	ci right 3.871862e-01	k: 3776	n:10000
CPS1   10000 perm   2 sec   (4031 perm/sec)   p_kst 3.776000e-01   p_cons 6.965000e-01   p_joint 7.072000e-01

Outputting figure to mutsig2_images.part000000000042/CPS1.14_4677_10000_0.3776_0.6965_0.7072.png
                gene_name: CPS1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 2 percent done.
CORIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.157215e-02	ci left: 9.144065e-01	ci right 9.251474e-01	k: 9199	n:10000
Cons ci ratio: 1.855977e-02	ci left: 8.091780e-01	ci right 8.244370e-01	k: 8169	n:10000
KS ci ratio: 2.663008e-02	ci left: 6.749868e-01	ci right 6.933059e-01	k: 6842	n:10000
CORIN   10000 perm   2 sec   (4319 perm/sec)   p_kst 6.842000e-01   p_cons 8.169000e-01   p_joint 9.199000e-01

Outputting figure to mutsig2_images.part000000000042/CORIN.13_3217_10000_0.6842_0.8169_0.9199.png
                gene_name: CORIN
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.93 

Current progress: 4 percent done.
CPAMD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.297765e-02	ci left: 3.443228e-01	ci right 3.631625e-01	k: 3537	n:10000
Cons ci ratio: 4.033941e-02	ci left: 4.757596e-01	ci right 4.954488e-01	k: 4856	n:10000
KS ci ratio: 7.021762e-02	ci left: 2.291867e-01	ci right 2.459664e-01	k: 2375	n:10000
CPAMD8   10000 perm   3 sec   (3838 perm/sec)   p_kst 2.375000e-01   p_cons 4.856000e-01   p_joint 3.537000e-01

Outputting figure to mutsig2_images.part000000000042/CPAMD8.9_5967_10000_0.2375_0.4856_0.3537.png
                gene_name: CPAMD8
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 6 percent done.
CORO2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.621760e-02	ci left: 2.508304e-01	ci right 2.681099e-01	k: 2594	n:10000
Cons ci ratio: 1.023114e-01	ci left: 1.214132e-01	ci right 1.346043e-01	k: 1279	n:10000
KS ci ratio: 3.428683e-02	ci left: 5.567190e-01	ci right 5.762422e-01	k: 5665	n:10000
CORO2B   10000 perm   2 sec   (5676 perm/sec)   p_kst 5.665000e-01   p_cons 1.279000e-01   p_joint 2.594000e-01

Joint ci ratio: 4.836426e-02	ci left: 2.412335e-01	ci right 2.532401e-01	k: 4944	n:20000
Cons ci ratio: 7.239501e-02	ci left: 1.232023e-01	ci right 1.325062e-01	k: 2556	n:20000
KS ci ratio: 2.524599e-02	ci left: 5.396192e-01	ci right 5.534672e-01	k: 10931	n:20000
CORO2B   20000 perm   4 sec   (5230 perm/sec)   p_kst 5.465500e-01   p_cons 1.278000e-01   p_joint 2.472000e-01

Outputting figure to mutsig2_images.part000000000042/CORO2B.8_1491_20000_0.54655_0.1278_0.2472.png
                gene_name: CORO2B
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 9 percent done.
CPD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.104105e-02	ci left: 1.818601e-01	ci right 1.973212e-01	k: 1895	n:10000
Cons ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
KS ci ratio: 7.186508e-02	ci left: 2.209917e-01	ci right 2.375663e-01	k: 2292	n:10000
CPD   10000 perm   2 sec   (4647 perm/sec)   p_kst 2.292000e-01   p_cons 5.140000e-02   p_joint 1.895000e-01

Joint ci ratio: 9.016148e-02	ci left: 8.244363e-02	ci right 9.027712e-02	k: 1726	n:20000
Cons ci ratio: 1.219798e-01	ci left: 4.609757e-02	ci right 5.213438e-02	k: 981	n:20000
KS ci ratio: 4.768535e-02	ci left: 2.464903e-01	ci right 2.585817e-01	k: 5050	n:20000
CPD   20000 perm   5 sec   (4131 perm/sec)   p_kst 2.525000e-01   p_cons 4.905000e-02   p_joint 8.630000e-02

Joint ci ratio: 6.495163e-02	ci left: 1.047392e-01	ci right 1.118036e-01	k: 3247	n:30000
Cons ci ratio: 1.004605e-01	ci left: 4.586852e-02	ci right 5.075276e-02	k: 1448	n:30000
KS ci ratio: 4.016018e-02	ci left: 2.361689e-01	ci right 2.458813e-01	k: 7230	n:30000
CPD   30000 perm   8 sec   (3872 perm/sec)   p_kst 2.410000e-01   p_cons 4.826667e-02   p_joint 1.082333e-01

Joint ci ratio: 6.880742e-02	ci left: 7.246183e-02	ci right 7.765006e-02	k: 3001	n:40000
Cons ci ratio: 8.865348e-02	ci left: 4.453039e-02	ci right 4.868575e-02	k: 1863	n:40000
KS ci ratio: 3.466924e-02	ci left: 2.379831e-01	ci right 2.464044e-01	k: 9687	n:40000
CPD   40000 perm   11 sec   (3751 perm/sec)   p_kst 2.421750e-01   p_cons 4.657500e-02   p_joint 7.502500e-02

Outputting figure to mutsig2_images.part000000000042/CPD.8_4227_40000_0.24218_0.046575_0.075025.png
                gene_name: CPD
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.078 

Current progress: 11 percent done.
CPE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.443225e-01	ci left: 6.372193e-02	ci right 7.373108e-02	k: 686	n:10000
Cons ci ratio: 5.511858e-02	ci left: 3.265426e-01	ci right 3.451531e-01	k: 3358	n:10000
KS ci ratio: 1.966875e-01	ci left: 3.443296e-02	ci right 4.203907e-02	k: 381	n:10000
CPE   10000 perm   2 sec   (4887 perm/sec)   p_kst 3.810000e-02   p_cons 3.358000e-01   p_joint 6.860000e-02

Joint ci ratio: 1.049967e-01	ci left: 6.171935e-02	ci right 6.860773e-02	k: 1302	n:20000
Cons ci ratio: 3.912369e-02	ci left: 3.276123e-01	ci right 3.407360e-01	k: 6683	n:20000
KS ci ratio: 1.429188e-01	ci left: 3.365392e-02	ci right 3.888202e-02	k: 724	n:20000
CPE   20000 perm   4 sec   (4615 perm/sec)   p_kst 3.620000e-02   p_cons 3.341500e-01   p_joint 6.510000e-02

Joint ci ratio: 1.010481e-01	ci left: 4.534800e-02	ci right 5.020672e-02	k: 1432	n:30000
Cons ci ratio: 3.196830e-02	ci left: 3.284966e-01	ci right 3.392022e-01	k: 10015	n:30000
KS ci ratio: 1.133555e-01	ci left: 3.615641e-02	ci right 4.053358e-02	k: 1149	n:30000
CPE   30000 perm   7 sec   (4497 perm/sec)   p_kst 3.830000e-02   p_cons 3.338333e-01   p_joint 4.773333e-02

Joint ci ratio: 1.004506e-01	ci left: 3.482981e-02	ci right 3.853785e-02	k: 1466	n:40000
Cons ci ratio: 2.895181e-02	ci left: 3.097019e-01	ci right 3.188251e-01	k: 12570	n:40000
KS ci ratio: 9.752065e-02	ci left: 3.692852e-02	ci right 4.073880e-02	k: 1552	n:40000
CPE   40000 perm   9 sec   (4412 perm/sec)   p_kst 3.880000e-02   p_cons 3.142500e-01   p_joint 3.665000e-02

Joint ci ratio: 7.337463e-02	ci left: 5.201519e-02	ci right 5.599679e-02	k: 2699	n:50000
Cons ci ratio: 2.593951e-02	ci left: 3.094545e-01	ci right 3.176071e-01	k: 15676	n:50000
KS ci ratio: 8.713779e-02	ci left: 3.720242e-02	ci right 4.061138e-02	k: 1944	n:50000
CPE   50000 perm   12 sec   (4216 perm/sec)   p_kst 3.888000e-02   p_cons 3.135200e-01   p_joint 5.398000e-02

Outputting figure to mutsig2_images.part000000000042/CPE.7_1467_50000_0.03888_0.31352_0.05398.png
                gene_name: CPE
               theta_stop: 0.087 
                    nperm: 50000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 13 percent done.
CORO2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.768697e-02	ci left: 5.097532e-01	ci right 5.294354e-01	k: 5196	n:10000
KS ci ratio: 2.287912e-02	ci left: 7.372464e-01	ci right 7.544102e-01	k: 7459	n:10000
CORO2A   10000 perm   2 sec   (5952 perm/sec)   p_kst 7.459000e-01   p_cons 5.196000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CORO2A.6_1622_10000_0.7459_0.5196_1.png
                gene_name: CORO2A
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
CP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.375245e-02	ci left: 5.644382e-01	ci right 5.839185e-01	k: 5742	n:10000
KS ci ratio: 1.425160e-02	ci left: 8.768454e-01	ci right 8.895304e-01	k: 8833	n:10000
CP   10000 perm   2 sec   (5102 perm/sec)   p_kst 8.833000e-01   p_cons 5.742000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CP.6_3274_10000_0.8833_0.5742_1.png
                gene_name: CP
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
CPA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.445463e-02	ci left: 5.543135e-01	ci right 5.738491e-01	k: 5641	n:10000
KS ci ratio: 2.184117e-02	ci left: 7.546407e-01	ci right 7.714058e-01	k: 7631	n:10000
CPA5   10000 perm   2 sec   (5572 perm/sec)   p_kst 7.631000e-01   p_cons 5.641000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPA5.6_1355_10000_0.7631_0.5641_1.png
                gene_name: CPA5
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
CPN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.020242e-02	ci left: 4.774582e-01	ci right 4.971492e-01	k: 4873	n:10000
Cons ci ratio: 6.994737e-02	ci left: 2.305695e-01	ci right 2.473828e-01	k: 2389	n:10000
KS ci ratio: 3.976252e-02	ci left: 4.829545e-01	ci right 5.026497e-01	k: 4928	n:10000
CPN1   10000 perm   2 sec   (5677 perm/sec)   p_kst 4.928000e-01   p_cons 2.389000e-01   p_joint 4.873000e-01

Outputting figure to mutsig2_images.part000000000042/CPN1.6_1413_10000_0.4928_0.2389_0.4873.png
                gene_name: CPN1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 21 percent done.
CPNE4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.872667e-02	ci left: 4.961503e-01	ci right 5.158462e-01	k: 5060	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
CPNE4   10000 perm   2 sec   (5378 perm/sec)   p_kst 1   p_cons 5.060000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPNE4.6_1734_10000_1_0.506_1.png
                gene_name: CPNE4
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
CPSF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.131928e-01	ci left: 2.920604e-02	ci right 3.626959e-02	k: 326	n:10000
Cons ci ratio: 1.252558e-01	ci left: 8.358655e-02	ci right 9.485408e-02	k: 891	n:10000
KS ci ratio: 1.751436e-01	ci left: 4.350916e-02	ci right 5.195681e-02	k: 476	n:10000
CPSF6   10000 perm   2 sec   (5214 perm/sec)   p_kst 4.760000e-02   p_cons 8.910000e-02   p_joint 3.260000e-02

Joint ci ratio: 1.560097e-01	ci left: 2.820837e-02	ci right 3.302937e-02	k: 611	n:20000
Cons ci ratio: 8.757747e-02	ci left: 8.704867e-02	ci right 9.507068e-02	k: 1820	n:20000
KS ci ratio: 1.238480e-01	ci left: 4.473862e-02	ci right 5.069376e-02	k: 953	n:20000
CPSF6   20000 perm   4 sec   (4745 perm/sec)   p_kst 4.765000e-02   p_cons 9.100000e-02   p_joint 3.055000e-02

Joint ci ratio: 7.839325e-02	ci left: 7.390949e-02	ci right 7.997274e-02	k: 2307	n:30000
Cons ci ratio: 7.093016e-02	ci left: 8.911316e-02	ci right 9.569936e-02	k: 2771	n:30000
KS ci ratio: 1.017208e-01	ci left: 4.476252e-02	ci right 4.959233e-02	k: 1414	n:30000
CPSF6   30000 perm   7 sec   (4575 perm/sec)   p_kst 4.713333e-02   p_cons 9.236667e-02   p_joint 7.690000e-02

Joint ci ratio: 7.240432e-02	ci left: 6.579764e-02	ci right 7.076525e-02	k: 2730	n:40000
Cons ci ratio: 6.127239e-02	ci left: 8.997369e-02	ci right 9.568558e-02	k: 3712	n:40000
KS ci ratio: 8.791397e-02	ci left: 4.526460e-02	ci right 4.945143e-02	k: 1893	n:40000
CPSF6   40000 perm   9 sec   (4458 perm/sec)   p_kst 4.732500e-02   p_cons 9.280000e-02   p_joint 6.825000e-02

Outputting figure to mutsig2_images.part000000000042/CPSF6.6_1692_40000_0.047325_0.0928_0.06825.png
                gene_name: CPSF6
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.071 

Current progress: 26 percent done.
CPT1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.710281e-02	ci left: 3.994411e-01	ci right 4.188118e-01	k: 4091	n:10000
Cons ci ratio: 5.368008e-02	ci left: 3.383613e-01	ci right 3.571274e-01	k: 3477	n:10000
KS ci ratio: 7.969522e-02	ci left: 1.869789e-01	ci right 2.025993e-01	k: 1947	n:10000
CPT1A   10000 perm   2 sec   (4707 perm/sec)   p_kst 1.947000e-01   p_cons 3.477000e-01   p_joint 4.091000e-01

Outputting figure to mutsig2_images.part000000000042/CPT1A.6_2434_10000_0.1947_0.3477_0.4091.png
                gene_name: CPT1A
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 28 percent done.
CPB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.585446e-02	ci left: 1.650429e-01	ci right 1.799484e-01	k: 1724	n:10000
Cons ci ratio: 7.078431e-02	ci left: 2.263229e-01	ci right 2.430319e-01	k: 2346	n:10000
KS ci ratio: 7.254263e-02	ci left: 2.177347e-01	ci right 2.342252e-01	k: 2259	n:10000
CPB1   10000 perm   2 sec   (5887 perm/sec)   p_kst 2.259000e-01   p_cons 2.346000e-01   p_joint 1.724000e-01

Outputting figure to mutsig2_images.part000000000042/CPB1.5_1298_10000_0.2259_0.2346_0.1724.png
                gene_name: CPB1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 30 percent done.
CPEB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.317267e-02	ci left: 4.420111e-01	ci right 4.616170e-01	k: 4518	n:10000
Cons ci ratio: 7.747908e-02	ci left: 1.958434e-01	ci right 2.117295e-01	k: 2037	n:10000
KS ci ratio: 5.557882e-02	ci left: 3.228692e-01	ci right 3.414287e-01	k: 3321	n:10000
CPEB1   10000 perm   2 sec   (5772 perm/sec)   p_kst 3.321000e-01   p_cons 2.037000e-01   p_joint 4.518000e-01

Outputting figure to mutsig2_images.part000000000042/CPEB1.5_1749_10000_0.3321_0.2037_0.4518.png
                gene_name: CPEB1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 32 percent done.
CPNE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.331010e-01	ci left: 2.428868e-02	ci right 3.079048e-02	k: 274	n:10000
Cons ci ratio: 3.981388e-01	ci left: 7.692674e-03	ci right 1.160097e-02	k: 95	n:10000
KS ci ratio: 5.751282e-02	ci left: 3.079837e-01	ci right 3.263229e-01	k: 3171	n:10000
CPNE1   10000 perm   2 sec   (5678 perm/sec)   p_kst 3.171000e-01   p_cons 9.500000e-03   p_joint 2.740000e-02

Joint ci ratio: 1.345678e-01	ci left: 3.795510e-02	ci right 4.347944e-02	k: 813	n:20000
Cons ci ratio: 2.868611e-01	ci left: 7.923549e-03	ci right 1.062202e-02	k: 184	n:20000
KS ci ratio: 4.207506e-02	ci left: 2.962374e-01	ci right 3.090200e-01	k: 6052	n:20000
CPNE1   20000 perm   4 sec   (4973 perm/sec)   p_kst 3.026000e-01   p_cons 9.200000e-03   p_joint 4.065000e-02

Joint ci ratio: 9.789633e-02	ci left: 4.824442e-02	ci right 5.324304e-02	k: 1521	n:30000
Cons ci ratio: 2.282778e-01	ci left: 8.621951e-03	ci right 1.087452e-02	k: 291	n:30000
KS ci ratio: 3.442348e-02	ci left: 2.965751e-01	ci right 3.069966e-01	k: 9053	n:30000
CPNE1   30000 perm   6 sec   (4824 perm/sec)   p_kst 3.017667e-01   p_cons 9.700000e-03   p_joint 5.070000e-02

Joint ci ratio: 9.470102e-02	ci left: 3.912654e-02	ci right 4.304044e-02	k: 1642	n:40000
Cons ci ratio: 2.017461e-01	ci left: 8.406347e-03	ci right 1.031590e-02	k: 373	n:40000
KS ci ratio: 2.983109e-02	ci left: 2.970048e-01	ci right 3.060240e-01	k: 12060	n:40000
CPNE1   40000 perm   9 sec   (4588 perm/sec)   p_kst 3.015000e-01   p_cons 9.325000e-03   p_joint 4.105000e-02

Joint ci ratio: 9.623211e-02	ci left: 3.057220e-02	ci right 3.368243e-02	k: 1605	n:50000
Cons ci ratio: 1.799625e-01	ci left: 8.553655e-03	ci right 1.026403e-02	k: 469	n:50000
KS ci ratio: 2.668713e-02	ci left: 2.973995e-01	ci right 3.054636e-01	k: 15071	n:50000
CPNE1   50000 perm   11 sec   (4502 perm/sec)   p_kst 3.014200e-01   p_cons 9.380000e-03   p_joint 3.210000e-02

Joint ci ratio: 1.087392e-01	ci left: 2.004602e-02	ci right 2.236728e-02	k: 1271	n:60000
Cons ci ratio: 1.793375e-01	ci left: 7.191250e-03	ci right 8.623630e-03	k: 473	n:60000
KS ci ratio: 2.439802e-02	ci left: 2.971318e-01	ci right 3.044874e-01	k: 18048	n:60000
CPNE1   60000 perm   14 sec   (4417 perm/sec)   p_kst 3.008000e-01   p_cons 7.883333e-03   p_joint 2.118333e-02

Joint ci ratio: 1.121857e-01	ci left: 1.618030e-02	ci right 1.811717e-02	k: 1199	n:70000
Cons ci ratio: 1.664902e-01	ci left: 7.202708e-03	ci right 8.524290e-03	k: 549	n:70000
KS ci ratio: 2.258140e-02	ci left: 2.975320e-01	ci right 3.043417e-01	k: 21065	n:70000
CPNE1   70000 perm   16 sec   (4332 perm/sec)   p_kst 3.009286e-01   p_cons 7.842857e-03   p_joint 1.712857e-02

Joint ci ratio: 1.104537e-01	ci left: 1.464319e-02	ci right 1.636721e-02	k: 1239	n:80000
Cons ci ratio: 1.545733e-01	ci left: 7.358272e-03	ci right 8.602807e-03	k: 637	n:80000
KS ci ratio: 2.109316e-02	ci left: 2.983459e-01	ci right 3.047185e-01	k: 24122	n:80000
CPNE1   80000 perm   19 sec   (4268 perm/sec)   p_kst 3.015250e-01   p_cons 7.962500e-03   p_joint 1.548750e-02

Joint ci ratio: 1.137558e-01	ci left: 1.228093e-02	ci right 1.377293e-02	k: 1171	n:90000
Cons ci ratio: 1.467412e-01	ci left: 7.289136e-03	ci right 8.454030e-03	k: 707	n:90000
KS ci ratio: 1.984252e-02	ci left: 2.994666e-01	ci right 3.054794e-01	k: 27222	n:90000
CPNE1   90000 perm   21 sec   (4208 perm/sec)   p_kst 3.024667e-01   p_cons 7.855556e-03   p_joint 1.301111e-02

Joint ci ratio: 8.492767e-02	ci left: 1.997334e-02	ci right 2.175460e-02	k: 2085	n:100000
Cons ci ratio: 1.281509e-01	ci left: 8.675613e-03	ci right 9.873109e-03	k: 926	n:100000
KS ci ratio: 1.881748e-02	ci left: 2.997735e-01	ci right 3.054780e-01	k: 30262	n:100000
CPNE1   100000 perm   24 sec   (4150 perm/sec)   p_kst 3.026200e-01   p_cons 9.260000e-03   p_joint 2.085000e-02

Joint ci ratio: 8.300425e-02	ci left: 1.904720e-02	ci right 2.070552e-02	k: 2185	n:110000
Cons ci ratio: 1.222901e-01	ci left: 8.688291e-03	ci right 9.828717e-03	k: 1017	n:110000
KS ci ratio: 1.792065e-02	ci left: 3.004028e-01	ci right 3.058439e-01	k: 33343	n:110000
CPNE1   110000 perm   27 sec   (4088 perm/sec)   p_kst 3.031182e-01   p_cons 9.245455e-03   p_joint 1.986364e-02

Joint ci ratio: 7.820399e-02	ci left: 1.970569e-02	ci right 2.131760e-02	k: 2460	n:120000
Cons ci ratio: 1.168476e-01	ci left: 8.748446e-03	ci right 9.842132e-03	k: 1114	n:120000
KS ci ratio: 1.716729e-02	ci left: 3.002841e-01	ci right 3.054921e-01	k: 36346	n:120000
CPNE1   120000 perm   30 sec   (4031 perm/sec)   p_kst 3.028833e-01   p_cons 9.283333e-03   p_joint 2.050000e-02

Joint ci ratio: 7.005989e-02	ci left: 2.269089e-02	ci right 2.434584e-02	k: 3056	n:130000
Cons ci ratio: 1.126367e-01	ci left: 8.710561e-03	ci right 9.757660e-03	k: 1199	n:130000
KS ci ratio: 1.648116e-02	ci left: 3.007096e-01	ci right 3.057145e-01	k: 39417	n:130000
CPNE1   130000 perm   33 sec   (3923 perm/sec)   p_kst 3.032077e-01   p_cons 9.223077e-03   p_joint 2.350769e-02

Joint ci ratio: 6.853258e-02	ci left: 2.205253e-02	ci right 2.362446e-02	k: 3196	n:140000
Cons ci ratio: 1.085950e-01	ci left: 8.720399e-03	ci right 9.728657e-03	k: 1290	n:140000
KS ci ratio: 1.588357e-02	ci left: 3.007501e-01	ci right 3.055724e-01	k: 42442	n:140000
CPNE1   140000 perm   36 sec   (3859 perm/sec)   p_kst 3.031571e-01   p_cons 9.214286e-03   p_joint 2.282857e-02

Joint ci ratio: 5.602420e-02	ci left: 3.072046e-02	ci right 3.249770e-02	k: 4740	n:150000
Cons ci ratio: 1.000016e-01	ci left: 9.632651e-03	ci right 1.065308e-02	k: 1520	n:150000
KS ci ratio: 1.534950e-02	ci left: 3.007081e-01	ci right 3.053662e-01	k: 45455	n:150000
CPNE1   150000 perm   40 sec   (3792 perm/sec)   p_kst 3.030333e-01   p_cons 1.013333e-02   p_joint 3.160000e-02

Joint ci ratio: 5.551076e-02	ci left: 2.938534e-02	ci right 3.106924e-02	k: 4835	n:160000
Cons ci ratio: 9.665776e-02	ci left: 9.682927e-03	ci right 1.067244e-02	k: 1627	n:160000
KS ci ratio: 1.486174e-02	ci left: 3.007923e-01	ci right 3.053023e-01	k: 48487	n:160000
CPNE1   160000 perm   43 sec   (3724 perm/sec)   p_kst 3.030438e-01   p_cons 1.016875e-02   p_joint 3.021875e-02

Outputting figure to mutsig2_images.part000000000042/CPNE1.5_1693_160000_0.30304_0.010169_0.030219.png
                gene_name: CPNE1
               theta_stop: 0.097 
                    nperm: 160000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0097 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 34 percent done.
CPSF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.010923e-01	ci left: 1.240539e-01	ci right 1.373620e-01	k: 1306	n:10000
Cons ci ratio: 9.062615e-02	ci left: 1.504109e-01	ci right 1.647892e-01	k: 1575	n:10000
KS ci ratio: 8.928483e-02	ci left: 1.543368e-01	ci right 1.688609e-01	k: 1615	n:10000
CPSF1   10000 perm   2 sec   (4245 perm/sec)   p_kst 1.615000e-01   p_cons 1.575000e-01   p_joint 1.306000e-01

Joint ci ratio: 6.830217e-02	ci left: 1.365491e-01	ci right 1.462554e-01	k: 2827	n:20000
Cons ci ratio: 6.037111e-02	ci left: 1.688180e-01	ci right 1.793770e-01	k: 3481	n:20000
KS ci ratio: 6.372376e-02	ci left: 1.540063e-01	ci right 1.641931e-01	k: 3181	n:20000
CPSF1   20000 perm   5 sec   (3946 perm/sec)   p_kst 1.590500e-01   p_cons 1.740500e-01   p_joint 1.413500e-01

Outputting figure to mutsig2_images.part000000000042/CPSF1.5_4480_20000_0.15905_0.17405_0.14135.png
                gene_name: CPSF1
               theta_stop: 0.068 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 36 percent done.
CPSF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.971741e-02	ci left: 2.317548e-01	ci right 2.485968e-01	k: 2401	n:10000
Cons ci ratio: 7.854533e-02	ci left: 1.915089e-01	ci right 2.072666e-01	k: 1993	n:10000
KS ci ratio: 4.782131e-02	ci left: 3.921708e-01	ci right 4.114864e-01	k: 4018	n:10000
CPSF7   10000 perm   2 sec   (5317 perm/sec)   p_kst 4.018000e-01   p_cons 1.993000e-01   p_joint 2.401000e-01

Outputting figure to mutsig2_images.part000000000042/CPSF7.5_1581_10000_0.4018_0.1993_0.2401.png
                gene_name: CPSF7
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 38 percent done.
CPT1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.515500e-02	ci left: 6.992813e-01	ci right 7.171972e-01	k: 7083	n:10000
Cons ci ratio: 5.201841e-02	ci left: 3.526716e-01	ci right 3.716088e-01	k: 3621	n:10000
KS ci ratio: 3.159149e-02	ci left: 5.965440e-01	ci right 6.157941e-01	k: 6062	n:10000
CPT1B   10000 perm   2 sec   (5050 perm/sec)   p_kst 6.062000e-01   p_cons 3.621000e-01   p_joint 7.083000e-01

Outputting figure to mutsig2_images.part000000000042/CPT1B.5_2391_10000_0.6062_0.3621_0.7083.png
                gene_name: CPT1B
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 40 percent done.
CPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.646934e-02	ci left: 8.428497e-01	ci right 8.569458e-01	k: 8500	n:10000
Cons ci ratio: 5.157110e-02	ci left: 3.566483e-01	ci right 3.756298e-01	k: 3661	n:10000
KS ci ratio: 4.104834e-02	ci left: 4.670686e-01	ci right 4.867449e-01	k: 4769	n:10000
CPA1   10000 perm   2 sec   (5553 perm/sec)   p_kst 4.769000e-01   p_cons 3.661000e-01   p_joint 8.500000e-01

Outputting figure to mutsig2_images.part000000000042/CPA1.4_1300_10000_0.4769_0.3661_0.85.png
                gene_name: CPA1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 43 percent done.
CPA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.987588e-02	ci left: 7.874592e-01	ci right 8.033683e-01	k: 7955	n:10000
Cons ci ratio: 1.441687e-02	ci left: 8.743904e-01	ci right 8.871869e-01	k: 8809	n:10000
KS ci ratio: 3.410571e-02	ci left: 5.593253e-01	ci right 5.788345e-01	k: 5691	n:10000
CPA6   10000 perm   2 sec   (5792 perm/sec)   p_kst 5.691000e-01   p_cons 8.809000e-01   p_joint 7.955000e-01

Outputting figure to mutsig2_images.part000000000042/CPA6.4_1358_10000_0.5691_0.8809_0.7955.png
                gene_name: CPA6
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 45 percent done.
CPEB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.815626e-02	ci left: 3.032226e-01	ci right 3.214868e-01	k: 3123	n:10000
KS ci ratio: 6.377672e-03	ci left: 9.710070e-01	ci right 9.773127e-01	k: 9743	n:10000
CPEB3   10000 perm   2 sec   (5402 perm/sec)   p_kst 9.743000e-01   p_cons 3.123000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPEB3.4_2160_10000_0.9743_0.3123_1.png
                gene_name: CPEB3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
CPEB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.892452e-02	ci left: 2.359040e-01	ci right 2.528451e-01	k: 2443	n:10000
Cons ci ratio: 1.172051e-01	ci left: 9.467402e-02	ci right 1.065598e-01	k: 1005	n:10000
KS ci ratio: 7.854533e-02	ci left: 1.915089e-01	ci right 2.072666e-01	k: 1993	n:10000
CPEB4   10000 perm   2 sec   (5620 perm/sec)   p_kst 1.993000e-01   p_cons 1.005000e-01   p_joint 2.443000e-01

Joint ci ratio: 4.669568e-02	ci left: 2.544273e-01	ci right 2.666424e-01	k: 5210	n:20000
Cons ci ratio: 8.188621e-02	ci left: 9.857491e-02	ci right 1.070410e-01	k: 2055	n:20000
KS ci ratio: 5.346336e-02	ci left: 2.061546e-01	ci right 2.175293e-01	k: 4236	n:20000
CPEB4   20000 perm   4 sec   (4983 perm/sec)   p_kst 2.118000e-01   p_cons 1.027500e-01   p_joint 2.605000e-01

Outputting figure to mutsig2_images.part000000000042/CPEB4.4_2230_20000_0.2118_0.10275_0.2605.png
                gene_name: CPEB4
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 49 percent done.
CPNE8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.614451e-02	ci left: 6.829473e-01	ci right 7.011407e-01	k: 6921	n:10000
Cons ci ratio: 4.802080e-02	ci left: 3.901793e-01	ci right 4.094791e-01	k: 3998	n:10000
KS ci ratio: 3.376626e-02	ci left: 5.642377e-01	ci right 5.837192e-01	k: 5740	n:10000
CPNE8   10000 perm   2 sec   (5602 perm/sec)   p_kst 5.740000e-01   p_cons 3.998000e-01   p_joint 6.921000e-01

Outputting figure to mutsig2_images.part000000000042/CPNE8.4_1775_10000_0.574_0.3998_0.6921.png
                gene_name: CPNE8
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 51 percent done.
CPSF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.727395e-02	ci left: 5.152564e-01	ci right 5.349290e-01	k: 5251	n:10000
Cons ci ratio: 1.468336e-02	ci left: 8.704028e-01	ci right 8.833768e-01	k: 8770	n:10000
KS ci ratio: 5.554127e-02	ci left: 3.231670e-01	ci right 3.417307e-01	k: 3324	n:10000
CPSF4   10000 perm   2 sec   (5402 perm/sec)   p_kst 3.324000e-01   p_cons 8.770000e-01   p_joint 5.251000e-01

Outputting figure to mutsig2_images.part000000000042/CPSF4.4_842_10000_0.3324_0.877_0.5251.png
                gene_name: CPSF4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 53 percent done.
COQ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.050389e-02	ci left: 6.132157e-01	ci right 6.323128e-01	k: 6228	n:10000
KS ci ratio: 3.088156e-02	ci left: 6.073893e-01	ci right 6.265425e-01	k: 6170	n:10000
COQ2   10000 perm   2 sec   (5694 perm/sec)   p_kst 6.170000e-01   p_cons 6.228000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/COQ2.3_1294_10000_0.617_0.6228_1.png
                gene_name: COQ2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
COX15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.442098e-01	ci left: 6.381856e-02	ci right 7.383439e-02	k: 687	n:10000
Cons ci ratio: 1.755337e-02	ci left: 8.255431e-01	ci right 8.402624e-01	k: 8330	n:10000
KS ci ratio: 2.092556e-01	ci left: 3.034440e-02	ci right 3.753044e-02	k: 338	n:10000
COX15   10000 perm   2 sec   (6106 perm/sec)   p_kst 3.380000e-02   p_cons 8.330000e-01   p_joint 6.870000e-02

Joint ci ratio: 9.914022e-02	ci left: 6.889464e-02	ci right 7.613023e-02	k: 1449	n:20000
Cons ci ratio: 1.216319e-02	ci left: 8.333765e-01	ci right 8.436249e-01	k: 16771	n:20000
KS ci ratio: 1.415071e-01	ci left: 3.432986e-02	ci right 3.960586e-02	k: 738	n:20000
COX15   20000 perm   4 sec   (5424 perm/sec)   p_kst 3.690000e-02   p_cons 8.385500e-01   p_joint 7.245000e-02

Joint ci ratio: 6.798367e-02	ci left: 9.636481e-02	ci right 1.031796e-01	k: 2992	n:30000
Cons ci ratio: 1.000245e-02	ci left: 8.323670e-01	ci right 8.407677e-01	k: 25098	n:30000
KS ci ratio: 1.166657e-01	ci left: 3.414708e-02	ci right 3.841000e-02	k: 1087	n:30000
COX15   30000 perm   6 sec   (5152 perm/sec)   p_kst 3.623333e-02   p_cons 8.366000e-01   p_joint 9.973333e-02

Joint ci ratio: 6.446171e-02	ci left: 8.189058e-02	ci right 8.736990e-02	k: 3384	n:40000
Cons ci ratio: 8.632987e-03	ci left: 8.338730e-01	ci right 8.411279e-01	k: 33501	n:40000
KS ci ratio: 1.015332e-01	ci left: 3.409809e-02	ci right 3.776968e-02	k: 1436	n:40000
COX15   40000 perm   8 sec   (4956 perm/sec)   p_kst 3.590000e-02   p_cons 8.375250e-01   p_joint 8.460000e-02

Joint ci ratio: 5.633045e-02	ci left: 8.580724e-02	ci right 9.080068e-02	k: 4414	n:50000
Cons ci ratio: 7.725086e-03	ci left: 8.341361e-01	ci right 8.406247e-01	k: 41870	n:50000
KS ci ratio: 9.076841e-02	ci left: 3.432542e-02	ci right 3.760874e-02	k: 1797	n:50000
COX15   50000 perm   10 sec   (4794 perm/sec)   p_kst 3.594000e-02   p_cons 8.374000e-01   p_joint 8.828000e-02

Outputting figure to mutsig2_images.part000000000042/COX15.3_1339_50000_0.03594_0.8374_0.08828.png
                gene_name: COX15
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.091 

Current progress: 57 percent done.
COX18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.858267e-01	ci left: 3.863000e-02	ci right 4.663920e-02	k: 425	n:10000
Cons ci ratio: 6.746352e-02	ci left: 2.438103e-01	ci right 2.609341e-01	k: 2523	n:10000
KS ci ratio: 2.055197e-01	ci left: 3.148396e-02	ci right 3.879009e-02	k: 350	n:10000
COX18   10000 perm   2 sec   (6409 perm/sec)   p_kst 3.500000e-02   p_cons 2.523000e-01   p_joint 4.250000e-02

Joint ci ratio: 1.362337e-01	ci left: 3.703607e-02	ci right 4.249877e-02	k: 794	n:20000
Cons ci ratio: 4.917014e-02	ci left: 2.351847e-01	ci right 2.470906e-01	k: 4822	n:20000
KS ci ratio: 1.451137e-01	ci left: 3.264050e-02	ci right 3.779577e-02	k: 703	n:20000
COX18   20000 perm   4 sec   (5266 perm/sec)   p_kst 3.515000e-02   p_cons 2.411000e-01   p_joint 3.970000e-02

Joint ci ratio: 9.254171e-02	ci left: 5.381590e-02	ci right 5.907041e-02	k: 1692	n:30000
Cons ci ratio: 4.041797e-02	ci left: 2.338519e-01	ci right 2.435321e-01	k: 7160	n:30000
KS ci ratio: 1.172259e-01	ci left: 3.382317e-02	ci right 3.806732e-02	k: 1077	n:30000
COX18   30000 perm   6 sec   (5056 perm/sec)   p_kst 3.590000e-02   p_cons 2.386667e-01   p_joint 5.640000e-02

Joint ci ratio: 8.892905e-02	ci left: 4.426122e-02	ci right 4.840496e-02	k: 1852	n:40000
Cons ci ratio: 3.393222e-02	ci left: 2.459115e-01	ci right 2.544248e-01	k: 10006	n:40000
KS ci ratio: 1.007002e-01	ci left: 3.465905e-02	ci right 3.835863e-02	k: 1459	n:40000
COX18   40000 perm   8 sec   (4900 perm/sec)   p_kst 3.647500e-02   p_cons 2.501500e-01   p_joint 4.630000e-02

Joint ci ratio: 8.113763e-02	ci left: 4.278752e-02	ci right 4.642559e-02	k: 2229	n:50000
Cons ci ratio: 3.031236e-02	ci left: 2.468260e-01	ci right 2.544430e-01	k: 12531	n:50000
KS ci ratio: 8.986501e-02	ci left: 3.501017e-02	ci right 3.832390e-02	k: 1832	n:50000
COX18   50000 perm   11 sec   (4714 perm/sec)   p_kst 3.664000e-02   p_cons 2.506200e-01   p_joint 4.458000e-02

Outputting figure to mutsig2_images.part000000000042/COX18.3_1026_50000_0.03664_0.25062_0.04458.png
                gene_name: COX18
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 60 percent done.
COX4I2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.517575e-02	ci left: 8.629443e-01	ci right 8.762395e-01	k: 8697	n:10000
Cons ci ratio: 4.973370e-02	ci left: 3.735570e-01	ci right 3.927111e-01	k: 3831	n:10000
KS ci ratio: 6.712391e-03	ci left: 9.681537e-01	ci right 9.747678e-01	k: 9716	n:10000
COX4I2   10000 perm   2 sec   (5535 perm/sec)   p_kst 9.716000e-01   p_cons 3.831000e-01   p_joint 8.697000e-01

Outputting figure to mutsig2_images.part000000000042/COX4I2.3_532_10000_0.9716_0.3831_0.8697.png
                gene_name: COX4I2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 62 percent done.
CPA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.155999e-02	ci left: 3.567477e-01	ci right 3.757303e-01	k: 3662	n:10000
Cons ci ratio: 4.451312e-02	ci left: 4.269487e-01	ci right 4.464882e-01	k: 4367	n:10000
KS ci ratio: 5.952407e-02	ci left: 2.934065e-01	ci right 3.115087e-01	k: 3024	n:10000
CPA3   10000 perm   2 sec   (5933 perm/sec)   p_kst 3.024000e-01   p_cons 4.367000e-01   p_joint 3.662000e-01

Outputting figure to mutsig2_images.part000000000042/CPA3.3_1298_10000_0.3024_0.4367_0.3662.png
                gene_name: CPA3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 64 percent done.
CPNE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.622383e-02	ci left: 3.178069e-01	ci right 3.362939e-01	k: 3270	n:10000
Cons ci ratio: 2.882575e-02	ci left: 6.395531e-01	ci right 6.583601e-01	k: 6490	n:10000
KS ci ratio: 8.083070e-02	ci left: 1.826474e-01	ci right 1.981334e-01	k: 1903	n:10000
CPNE2   10000 perm   2 sec   (5877 perm/sec)   p_kst 1.903000e-01   p_cons 6.490000e-01   p_joint 3.270000e-01

Outputting figure to mutsig2_images.part000000000042/CPNE2.3_1707_10000_0.1903_0.649_0.327.png
                gene_name: CPNE2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 66 percent done.
CPNE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.271018e-02	ci left: 7.400768e-01	ci right 7.571782e-01	k: 7487	n:10000
KS ci ratio: 1.208994e-02	ci left: 9.075108e-01	ci right 9.186472e-01	k: 9132	n:10000
CPNE3   10000 perm   2 sec   (5658 perm/sec)   p_kst 9.132000e-01   p_cons 7.487000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPNE3.3_1674_10000_0.9132_0.7487_1.png
                gene_name: CPNE3
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
CPO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.519609e-02	ci left: 5.437922e-01	ci right 5.633765e-01	k: 5536	n:10000
Cons ci ratio: 6.894319e-02	ci left: 2.358052e-01	ci right 2.527440e-01	k: 2442	n:10000
KS ci ratio: 3.558222e-02	ci left: 5.383830e-01	ci right 5.579889e-01	k: 5482	n:10000
CPO   10000 perm   2 sec   (5834 perm/sec)   p_kst 5.482000e-01   p_cons 2.442000e-01   p_joint 5.536000e-01

Outputting figure to mutsig2_images.part000000000042/CPO.3_1161_10000_0.5482_0.2442_0.5536.png
                gene_name: CPO
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 70 percent done.
COQ6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.892090e-03	ci left: 9.665720e-01	ci right 9.733506e-01	k: 9701	n:10000
Cons ci ratio: 9.344901e-03	ci left: 9.417001e-01	ci right 9.506377e-01	k: 9463	n:10000
KS ci ratio: 4.854499e-02	ci left: 3.850022e-01	ci right 4.042592e-01	k: 3946	n:10000
COQ6   10000 perm   2 sec   (5928 perm/sec)   p_kst 3.946000e-01   p_cons 9.463000e-01   p_joint 9.701000e-01

Outputting figure to mutsig2_images.part000000000042/COQ6.2_1455_10000_0.3946_0.9463_0.9701.png
                gene_name: COQ6
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 72 percent done.
COQ9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.610159e-02	ci left: 6.836528e-01	ci right 7.018348e-01	k: 6928	n:10000
Cons ci ratio: 4.133093e-03	ci left: 9.868662e-01	ci right 9.910417e-01	k: 9891	n:10000
KS ci ratio: 7.733613e-02	ci left: 1.964346e-01	ci right 2.123380e-01	k: 2043	n:10000
COQ9   10000 perm   2 sec   (5117 perm/sec)   p_kst 2.043000e-01   p_cons 9.891000e-01   p_joint 6.928000e-01

Outputting figure to mutsig2_images.part000000000042/COQ9.2_993_10000_0.2043_0.9891_0.6928.png
                gene_name: COQ9
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 74 percent done.
CORO6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.155899e-01	ci left: 2.854258e-02	ci right 3.553353e-02	k: 319	n:10000
Cons ci ratio: 2.348632e-01	ci left: 2.391158e-02	ci right 3.036784e-02	k: 270	n:10000
KS ci ratio: 2.049711e-02	ci left: 7.771196e-01	ci right 7.933139e-01	k: 7853	n:10000
CORO6   10000 perm   2 sec   (6220 perm/sec)   p_kst 7.853000e-01   p_cons 2.700000e-02   p_joint 3.190000e-02

Joint ci ratio: 1.530674e-01	ci left: 2.931517e-02	ci right 3.422220e-02	k: 634	n:20000
Cons ci ratio: 1.665517e-01	ci left: 2.470171e-02	ci right 2.923722e-02	k: 538	n:20000
KS ci ratio: 1.449995e-02	ci left: 7.793916e-01	ci right 7.908254e-01	k: 15703	n:20000
CORO6   20000 perm   4 sec   (5388 perm/sec)   p_kst 7.851500e-01   p_cons 2.690000e-02   p_joint 3.170000e-02

Joint ci ratio: 1.207561e-01	ci left: 3.188072e-02	ci right 3.601018e-02	k: 1017	n:30000
Cons ci ratio: 1.351760e-01	ci left: 2.542076e-02	ci right 2.913821e-02	k: 817	n:30000
KS ci ratio: 1.179408e-02	ci left: 7.817515e-01	ci right 7.910596e-01	k: 23593	n:30000
CORO6   30000 perm   6 sec   (5096 perm/sec)   p_kst 7.864333e-01   p_cons 2.723333e-02   p_joint 3.390000e-02

Joint ci ratio: 1.050330e-01	ci left: 3.187989e-02	ci right 3.543823e-02	k: 1345	n:40000
Cons ci ratio: 1.166091e-01	ci left: 2.587068e-02	ci right 2.909841e-02	k: 1098	n:40000
KS ci ratio: 1.021345e-02	ci left: 7.824007e-01	ci right 7.904577e-01	k: 31458	n:40000
CORO6   40000 perm   8 sec   (4875 perm/sec)   p_kst 7.864500e-01   p_cons 2.745000e-02   p_joint 3.362500e-02

Joint ci ratio: 9.330092e-02	ci left: 3.250678e-02	ci right 3.570761e-02	k: 1704	n:50000
Cons ci ratio: 1.032883e-01	ci left: 2.655193e-02	ci right 2.946321e-02	k: 1399	n:50000
KS ci ratio: 9.114236e-03	ci left: 7.836060e-01	ci right 7.908006e-01	k: 39361	n:50000
CORO6   50000 perm   10 sec   (4793 perm/sec)   p_kst 7.872200e-01   p_cons 2.798000e-02   p_joint 3.408000e-02

Joint ci ratio: 8.530140e-02	ci left: 3.254781e-02	ci right 3.546416e-02	k: 2039	n:60000
Cons ci ratio: 9.420253e-02	ci left: 2.672707e-02	ci right 2.938551e-02	k: 1682	n:60000
KS ci ratio: 8.327648e-03	ci left: 7.836180e-01	ci right 7.901876e-01	k: 47215	n:60000
CORO6   60000 perm   13 sec   (4717 perm/sec)   p_kst 7.869167e-01   p_cons 2.803333e-02   p_joint 3.398333e-02

Outputting figure to mutsig2_images.part000000000042/CORO6.2_1459_60000_0.78692_0.028033_0.033983.png
                gene_name: CORO6
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.035 

Current progress: 77 percent done.
COX10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.163074e-01	ci left: 9.603734e-02	ci right 1.079956e-01	k: 1019	n:10000
Cons ci ratio: 1.140784e-01	ci left: 9.954457e-02	ci right 1.116863e-01	k: 1055	n:10000
KS ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
COX10   10000 perm   2 sec   (6318 perm/sec)   p_kst 1.086000e-01   p_cons 1.055000e-01   p_joint 1.019000e-01

Joint ci ratio: 1.078584e-01	ci left: 5.859920e-02	ci right 6.532884e-02	k: 1238	n:20000
Cons ci ratio: 7.949380e-02	ci left: 1.040745e-01	ci right 1.127398e-01	k: 2167	n:20000
KS ci ratio: 7.876228e-02	ci left: 1.058430e-01	ci right 1.145707e-01	k: 2203	n:20000
COX10   20000 perm   4 sec   (5600 perm/sec)   p_kst 1.101500e-01   p_cons 1.083500e-01   p_joint 6.190000e-02

Joint ci ratio: 4.653266e-02	ci left: 1.868295e-01	ci right 1.957637e-01	k: 5738	n:30000
Cons ci ratio: 6.458430e-02	ci left: 1.058234e-01	ci right 1.129191e-01	k: 3280	n:30000
KS ci ratio: 6.420047e-02	ci left: 1.069735e-01	ci right 1.141021e-01	k: 3315	n:30000
COX10   30000 perm   6 sec   (5108 perm/sec)   p_kst 1.105000e-01   p_cons 1.093333e-01   p_joint 1.912667e-01

Outputting figure to mutsig2_images.part000000000042/COX10.2_1360_30000_0.1105_0.10933_0.19127.png
                gene_name: COX10
               theta_stop: 0.065 
                    nperm: 30000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 79 percent done.
COX4I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.297280e-02	ci left: 4.443061e-01	ci right 4.639206e-01	k: 4541	n:10000
Cons ci ratio: 2.424458e-02	ci left: 7.144176e-01	ci right 7.320522e-01	k: 7233	n:10000
KS ci ratio: 1.895761e-01	ci left: 3.710237e-02	ci right 4.496786e-02	k: 409	n:10000
COX4I1   10000 perm   1 sec   (7127 perm/sec)   p_kst 4.090000e-02   p_cons 7.233000e-01   p_joint 4.541000e-01

Joint ci ratio: 5.605908e-02	ci left: 1.909136e-01	ci right 2.019748e-01	k: 3928	n:20000
Cons ci ratio: 1.728094e-02	ci left: 7.138213e-01	ci right 7.263147e-01	k: 14402	n:20000
KS ci ratio: 1.346540e-01	ci left: 3.790672e-02	ci right 4.342783e-02	k: 812	n:20000
COX4I1   20000 perm   3 sec   (6088 perm/sec)   p_kst 4.060000e-02   p_cons 7.201000e-01   p_joint 1.964000e-01

Joint ci ratio: 4.556787e-02	ci left: 1.933382e-01	ci right 2.023870e-01	k: 5935	n:30000
Cons ci ratio: 1.409359e-02	ci left: 7.154511e-01	ci right 7.256394e-01	k: 21617	n:30000
KS ci ratio: 1.093162e-01	ci left: 3.884897e-02	ci right 4.337378e-02	k: 1232	n:30000
COX4I1   30000 perm   5 sec   (5763 perm/sec)   p_kst 4.106667e-02   p_cons 7.205667e-01   p_joint 1.978333e-01

Joint ci ratio: 3.931035e-02	ci left: 1.951713e-01	ci right 2.030224e-01	k: 7963	n:40000
Cons ci ratio: 1.222793e-02	ci left: 7.153957e-01	ci right 7.242224e-01	k: 28793	n:40000
KS ci ratio: 9.314515e-02	ci left: 4.042168e-02	ci right 4.439510e-02	k: 1695	n:40000
COX4I1   40000 perm   7 sec   (5464 perm/sec)   p_kst 4.237500e-02   p_cons 7.198250e-01   p_joint 1.990750e-01

Outputting figure to mutsig2_images.part000000000042/COX4I1.2_526_40000_0.042375_0.71983_0.19908.png
                gene_name: COX4I1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.20 

Current progress: 81 percent done.
CP110
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.165393e-02	ci left: 7.577777e-01	ci right 7.744670e-01	k: 7662	n:10000
Cons ci ratio: 3.088809e-02	ci left: 6.072889e-01	ci right 6.264430e-01	k: 6169	n:10000
KS ci ratio: 3.466525e-02	ci left: 5.513070e-01	ci right 5.708574e-01	k: 5611	n:10000
CP110   10000 perm   2 sec   (4999 perm/sec)   p_kst 5.611000e-01   p_cons 6.169000e-01   p_joint 7.662000e-01

Outputting figure to mutsig2_images.part000000000042/CP110.2_3028_10000_0.5611_0.6169_0.7662.png
                gene_name: CP110
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 83 percent done.
CPA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.880677e-02	ci left: 6.398548e-01	ci right 6.586581e-01	k: 6493	n:10000
KS ci ratio: 2.083700e-02	ci left: 7.714461e-01	ci right 7.877907e-01	k: 7797	n:10000
CPA4   10000 perm   2 sec   (6385 perm/sec)   p_kst 7.797000e-01   p_cons 6.493000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPA4.2_1310_10000_0.7797_0.6493_1.png
                gene_name: CPA4
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
CPB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.573329e-02	ci left: 5.362797e-01	ci right 5.558935e-01	k: 5461	n:10000
Cons ci ratio: 3.288380e-02	ci left: 5.771752e-01	ci right 5.965742e-01	k: 5869	n:10000
KS ci ratio: 9.208707e-02	ci left: 1.462904e-01	ci right 1.605121e-01	k: 1533	n:10000
CPB2   10000 perm   2 sec   (6467 perm/sec)   p_kst 1.533000e-01   p_cons 5.869000e-01   p_joint 5.461000e-01

Outputting figure to mutsig2_images.part000000000042/CPB2.2_1316_10000_0.1533_0.5869_0.5461.png
                gene_name: CPB2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 87 percent done.
CPEB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.147477e-01	ci left: 9.847268e-02	ci right 1.105588e-01	k: 1044	n:10000
Cons ci ratio: 1.040429e-01	ci left: 1.177960e-01	ci right 1.308238e-01	k: 1242	n:10000
KS ci ratio: 1.232929e-01	ci left: 8.611301e-02	ci right 9.752607e-02	k: 917	n:10000
CPEB2   10000 perm   2 sec   (4720 perm/sec)   p_kst 9.170000e-02   p_cons 1.242000e-01   p_joint 1.044000e-01

Joint ci ratio: 5.099718e-02	ci left: 2.222004e-01	ci right 2.338788e-01	k: 4560	n:20000
Cons ci ratio: 7.516773e-02	ci left: 1.151825e-01	ci right 1.242283e-01	k: 2393	n:20000
KS ci ratio: 8.718300e-02	ci left: 8.778382e-02	ci right 9.583530e-02	k: 1835	n:20000
CPEB2   20000 perm   4 sec   (4498 perm/sec)   p_kst 9.175000e-02   p_cons 1.196500e-01   p_joint 2.280000e-01

Outputting figure to mutsig2_images.part000000000042/CPEB2.2_3162_20000_0.09175_0.11965_0.228.png
                gene_name: CPEB2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 89 percent done.
CPLX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.565438e-01	ci left: 5.436451e-02	ci right 6.369444e-02	k: 589	n:10000
Cons ci ratio: 1.343944e-01	ci left: 7.310807e-02	ci right 8.373906e-02	k: 783	n:10000
KS ci ratio: 6.248709e-02	ci left: 2.734923e-01	ci right 2.912347e-01	k: 2823	n:10000
CPLX4   10000 perm   2 sec   (6576 perm/sec)   p_kst 2.823000e-01   p_cons 7.830000e-02   p_joint 5.890000e-02

Joint ci ratio: 1.229707e-01	ci left: 4.536948e-02	ci right 5.136270e-02	k: 966	n:20000
Cons ci ratio: 9.486915e-02	ci left: 7.490680e-02	ci right 8.241624e-02	k: 1572	n:20000
KS ci ratio: 4.445389e-02	ci left: 2.736853e-01	ci right 2.861787e-01	k: 5598	n:20000
CPLX4   20000 perm   4 sec   (5698 perm/sec)   p_kst 2.799000e-01   p_cons 7.860000e-02   p_joint 4.830000e-02

Joint ci ratio: 1.018342e-01	ci left: 4.466495e-02	ci right 4.948992e-02	k: 1411	n:30000
Cons ci ratio: 7.734530e-02	ci left: 7.580818e-02	ci right 8.194034e-02	k: 2365	n:30000
KS ci ratio: 3.636415e-02	ci left: 2.740954e-01	ci right 2.842807e-01	k: 8375	n:30000
CPLX4   30000 perm   6 sec   (5221 perm/sec)   p_kst 2.791667e-01   p_cons 7.883333e-02   p_joint 4.703333e-02

Joint ci ratio: 8.755066e-02	ci left: 4.563175e-02	ci right 4.983422e-02	k: 1908	n:40000
Cons ci ratio: 6.684149e-02	ci left: 7.652243e-02	ci right 8.183885e-02	k: 3166	n:40000
KS ci ratio: 3.141036e-02	ci left: 2.758274e-01	ci right 2.846545e-01	k: 11209	n:40000
CPLX4   40000 perm   8 sec   (5047 perm/sec)   p_kst 2.802250e-01   p_cons 7.915000e-02   p_joint 4.770000e-02

Outputting figure to mutsig2_images.part000000000042/CPLX4.2_495_40000_0.28023_0.07915_0.0477.png
                gene_name: CPLX4
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.050 

Current progress: 91 percent done.
CPNE6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.371106e-02	ci left: 5.650398e-01	ci right 5.845166e-01	k: 5748	n:10000
Cons ci ratio: 1.576830e-01	ci left: 5.359424e-02	ci right 6.286520e-02	k: 581	n:10000
KS ci ratio: 2.767080e-02	ci left: 6.580680e-01	ci right 6.766344e-01	k: 6674	n:10000
CPNE6   10000 perm   2 sec   (6361 perm/sec)   p_kst 6.674000e-01   p_cons 5.810000e-02   p_joint 5.748000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.125313e-01	ci left: 5.397247e-02	ci right 6.045701e-02	k: 1143	n:20000
KS ci ratio: 1.970371e-02	ci left: 6.577068e-01	ci right 6.708454e-01	k: 13286	n:20000
CPNE6   20000 perm   4 sec   (5515 perm/sec)   p_kst 6.643000e-01   p_cons 5.715000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 9.131898e-02	ci left: 5.521814e-02	ci right 6.053455e-02	k: 1735	n:30000
KS ci ratio: 1.616041e-02	ci left: 6.569163e-01	ci right 6.676523e-01	k: 19869	n:30000
CPNE6   30000 perm   6 sec   (5279 perm/sec)   p_kst 6.623000e-01   p_cons 5.783333e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPNE6.2_1734_30000_0.6623_0.057833_1.png
                gene_name: CPNE6
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.061 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
CPNE9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.127917e-02	ci left: 1.809743e-01	ci right 1.964075e-01	k: 1886	n:10000
KS ci ratio: 2.385736e-02	ci left: 7.208794e-01	ci right 7.383866e-01	k: 7297	n:10000
CPNE9   10000 perm   2 sec   (5689 perm/sec)   p_kst 7.297000e-01   p_cons 1.886000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000042/CPNE9.2_1742_10000_0.7297_0.1886_1.png
                gene_name: CPNE9
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
CPSF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.537082e-02	ci left: 2.048126e-01	ci right 2.209550e-01	k: 2128	n:10000
Cons ci ratio: 9.691176e-02	ci left: 1.337444e-01	ci right 1.474657e-01	k: 1405	n:10000
KS ci ratio: 1.766676e-02	ci left: 8.237123e-01	ci right 8.384943e-01	k: 8312	n:10000
CPSF3   10000 perm   2 sec   (5740 perm/sec)   p_kst 8.312000e-01   p_cons 1.405000e-01   p_joint 2.128000e-01

Outputting figure to mutsig2_images.part000000000042/CPSF3.2_2127_10000_0.8312_0.1405_0.2128.png
                gene_name: CPSF3
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 98 percent done.
CPT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.989652e-01	ci left: 1.437251e-02	ci right 1.951444e-02	k: 168	n:10000
Cons ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
KS ci ratio: 1.158024e-01	ci left: 9.681653e-02	ci right 1.088160e-01	k: 1027	n:10000
CPT2   10000 perm   2 sec   (5827 perm/sec)   p_kst 1.027000e-01   p_cons 9.200000e-03   p_joint 1.680000e-02

Joint ci ratio: 2.289106e-01	ci left: 1.279482e-02	ci right 1.614852e-02	k: 288	n:20000
Cons ci ratio: 2.908546e-01	ci left: 7.691529e-03	ci right 1.035416e-02	k: 179	n:20000
KS ci ratio: 8.237831e-02	ci left: 9.749509e-02	ci right 1.059211e-01	k: 2033	n:20000
CPT2   20000 perm   4 sec   (5176 perm/sec)   p_kst 1.016500e-01   p_cons 8.950000e-03   p_joint 1.440000e-02

Joint ci ratio: 1.870157e-01	ci left: 1.308242e-02	ci right 1.581280e-02	k: 432	n:30000
Cons ci ratio: 2.420484e-01	ci left: 7.617595e-03	ci right 9.745863e-03	k: 259	n:30000
KS ci ratio: 6.779512e-02	ci left: 9.685722e-02	ci right 1.036871e-01	k: 3007	n:30000
CPT2   30000 perm   6 sec   (4968 perm/sec)   p_kst 1.002333e-01   p_cons 8.633333e-03   p_joint 1.440000e-02

Joint ci ratio: 1.603252e-01	ci left: 1.354343e-02	ci right 1.592778e-02	k: 588	n:40000
Cons ci ratio: 2.139160e-01	ci left: 7.434246e-03	ci right 9.238224e-03	k: 332	n:40000
KS ci ratio: 5.852346e-02	ci left: 9.789086e-02	ci right 1.038172e-01	k: 4033	n:40000
CPT2   40000 perm   9 sec   (4565 perm/sec)   p_kst 1.008250e-01   p_cons 8.300000e-03   p_joint 1.470000e-02

Joint ci ratio: 1.440213e-01	ci left: 1.354762e-02	ci right 1.566929e-02	k: 729	n:50000
Cons ci ratio: 1.920904e-01	ci left: 7.466281e-03	ci right 9.071597e-03	k: 412	n:50000
KS ci ratio: 5.250445e-02	ci left: 9.766042e-02	ci right 1.029461e-01	k: 5014	n:50000
CPT2   50000 perm   11 sec   (4484 perm/sec)   p_kst 1.002800e-01   p_cons 8.240000e-03   p_joint 1.458000e-02

Joint ci ratio: 1.328652e-01	ci left: 1.334912e-02	ci right 1.526495e-02	k: 857	n:60000
Cons ci ratio: 1.735275e-01	ci left: 7.701206e-03	ci right 9.180266e-03	k: 505	n:60000
KS ci ratio: 4.796085e-02	ci left: 9.777548e-02	ci right 1.025966e-01	k: 6010	n:60000
CPT2   60000 perm   14 sec   (4417 perm/sec)   p_kst 1.001667e-01   p_cons 8.416667e-03   p_joint 1.428333e-02

Joint ci ratio: 1.251185e-01	ci left: 1.296269e-02	ci right 1.470653e-02	k: 967	n:70000
Cons ci ratio: 1.626588e-01	ci left: 7.558950e-03	ci right 8.910862e-03	k: 575	n:70000
KS ci ratio: 4.442370e-02	ci left: 9.787194e-02	ci right 1.023327e-01	k: 7006	n:70000
CPT2   70000 perm   16 sec   (4376 perm/sec)   p_kst 1.000857e-01   p_cons 8.214286e-03   p_joint 1.381429e-02

Joint ci ratio: 1.174847e-01	ci left: 1.291805e-02	ci right 1.454249e-02	k: 1097	n:80000
Cons ci ratio: 1.528912e-01	ci left: 7.526589e-03	ci right 8.784472e-03	k: 651	n:80000
KS ci ratio: 4.149991e-02	ci left: 9.825141e-02	ci right 1.024276e-01	k: 8026	n:80000
CPT2   80000 perm   19 sec   (4297 perm/sec)   p_kst 1.003250e-01   p_cons 8.137500e-03   p_joint 1.371250e-02

Joint ci ratio: 1.107316e-01	ci left: 1.297233e-02	ci right 1.450370e-02	k: 1235	n:90000
Cons ci ratio: 1.453002e-01	ci left: 7.439049e-03	ci right 8.615214e-03	k: 721	n:90000
KS ci ratio: 3.915875e-02	ci left: 9.822362e-02	ci right 1.021577e-01	k: 9016	n:90000
CPT2   90000 perm   21 sec   (4230 perm/sec)   p_kst 1.001778e-01   p_cons 8.011111e-03   p_joint 1.372222e-02

Joint ci ratio: 1.042568e-01	ci left: 1.321272e-02	ci right 1.467567e-02	k: 1393	n:100000
Cons ci ratio: 1.370047e-01	ci left: 7.563412e-03	ci right 8.685399e-03	k: 811	n:100000
KS ci ratio: 3.712434e-02	ci left: 9.844475e-02	ci right 1.021785e-01	k: 10030	n:100000
CPT2   100000 perm   24 sec   (4177 perm/sec)   p_kst 1.003000e-01   p_cons 8.110000e-03   p_joint 1.393000e-02

Joint ci ratio: 9.951692e-02	ci left: 1.321643e-02	ci right 1.460937e-02	k: 1529	n:110000
Cons ci ratio: 1.311629e-01	ci left: 7.525986e-03	ci right 8.591106e-03	k: 885	n:110000
KS ci ratio: 3.547732e-02	ci left: 9.812493e-02	ci right 1.016780e-01	k: 10988	n:110000
CPT2   110000 perm   27 sec   (4121 perm/sec)   p_kst 9.989091e-02   p_cons 8.045455e-03   p_joint 1.390000e-02

Joint ci ratio: 9.516728e-02	ci left: 1.327774e-02	ci right 1.461257e-02	k: 1672	n:120000
Cons ci ratio: 1.247711e-01	ci left: 7.649050e-03	ci right 8.674932e-03	k: 978	n:120000
KS ci ratio: 3.395123e-02	ci left: 9.828332e-02	ci right 1.016860e-01	k: 11997	n:120000
CPT2   120000 perm   30 sec   (4060 perm/sec)   p_kst 9.997500e-02   p_cons 8.150000e-03   p_joint 1.393333e-02

Joint ci ratio: 9.134226e-02	ci left: 1.333074e-02	ci right 1.461415e-02	k: 1815	n:130000
Cons ci ratio: 1.196254e-01	ci left: 7.701996e-03	ci right 8.689362e-03	k: 1064	n:130000
KS ci ratio: 3.256758e-02	ci left: 9.863394e-02	ci right 1.019070e-01	k: 13034	n:130000
CPT2   130000 perm   33 sec   (3988 perm/sec)   p_kst 1.002615e-01   p_cons 8.184615e-03   p_joint 1.396154e-02

Joint ci ratio: 8.801261e-02	ci left: 1.335613e-02	ci right 1.459269e-02	k: 1955	n:140000
Cons ci ratio: 1.149672e-01	ci left: 7.761999e-03	ci right 8.715680e-03	k: 1152	n:140000
KS ci ratio: 3.145106e-02	ci left: 9.830559e-02	ci right 1.014539e-01	k: 13982	n:140000
CPT2   140000 perm   36 sec   (3914 perm/sec)   p_kst 9.987143e-02   p_cons 8.228571e-03   p_joint 1.396429e-02

Joint ci ratio: 8.516674e-02	ci left: 1.333318e-02	ci right 1.452572e-02	k: 2088	n:150000
Cons ci ratio: 1.112670e-01	ci left: 7.749818e-03	ci right 8.669344e-03	k: 1230	n:150000
KS ci ratio: 3.035399e-02	ci left: 9.853920e-02	ci right 1.015829e-01	k: 15008	n:150000
CPT2   150000 perm   39 sec   (3857 perm/sec)   p_kst 1.000533e-01   p_cons 8.200000e-03   p_joint 1.392000e-02

Joint ci ratio: 8.254254e-02	ci left: 1.332591e-02	ci right 1.447930e-02	k: 2223	n:160000
Cons ci ratio: 1.076952e-01	ci left: 7.770005e-03	ci right 8.660454e-03	k: 1313	n:160000
KS ci ratio: 2.938667e-02	ci left: 9.860867e-02	ci right 1.015558e-01	k: 16012	n:160000
CPT2   160000 perm   42 sec   (3809 perm/sec)   p_kst 1.000750e-01   p_cons 8.206250e-03   p_joint 1.389375e-02

Joint ci ratio: 8.000940e-02	ci left: 1.336612e-02	ci right 1.448584e-02	k: 2366	n:170000
Cons ci ratio: 1.047496e-01	ci left: 7.742395e-03	ci right 8.603916e-03	k: 1388	n:170000
KS ci ratio: 2.849327e-02	ci left: 9.875315e-02	ci right 1.016134e-01	k: 17030	n:170000
CPT2   170000 perm   45 sec   (3763 perm/sec)   p_kst 1.001765e-01   p_cons 8.164706e-03   p_joint 1.391765e-02

Joint ci ratio: 7.782188e-02	ci left: 1.335876e-02	ci right 1.444587e-02	k: 2501	n:180000
Cons ci ratio: 1.014755e-01	ci left: 7.804794e-03	ci right 8.644494e-03	k: 1479	n:180000
KS ci ratio: 2.764690e-02	ci left: 9.907604e-02	ci right 1.018591e-01	k: 18083	n:180000
CPT2   180000 perm   48 sec   (3717 perm/sec)   p_kst 1.004611e-01   p_cons 8.216667e-03   p_joint 1.389444e-02

Joint ci ratio: 8.224239e-02	ci left: 1.132959e-02	ci right 1.230644e-02	k: 2244	n:190000
Cons ci ratio: 9.887188e-02	ci left: 7.799386e-03	ci right 8.615726e-03	k: 1558	n:190000
KS ci ratio: 2.689986e-02	ci left: 9.917770e-02	ci right 1.018871e-01	k: 19100	n:190000
CPT2   190000 perm   52 sec   (3667 perm/sec)   p_kst 1.005263e-01   p_cons 8.200000e-03   p_joint 1.181053e-02

Outputting figure to mutsig2_images.part000000000042/CPT2.2_1997_190000_0.10053_0.0082_0.011811.png
                gene_name: CPT2
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.0082 
      ci_cons_bounds_left: 0.0078 
     ci_cons_bounds_right: 0.0086 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000042
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 42 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 9893897: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000043> was used as the working directory.
Started at Sat Oct  6 00:04:14 2012
Results reported at Sat Oct  6 01:14:42 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000043.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000043.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 43  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000043.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   4169.35 sec.
    Max Memory :      4568 MB
    Max Swap   :      6938 MB

    Max Processes  :         7
    Max Threads    :        72

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
43
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 43
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 43: processing genes 3787 - 3876
Calculating significance of each gene.
Using projection method.
3787	CPVL	2.321969e-01
3788	CPXCR1	8.997149e-07
3789	CPXM1	4.655881e-01
3790	CPXM2	1.082997e-02
3791	CPZ	1.357035e-01
3792	CR1	2.375324e-01
3793	CR1L	7.937623e-01
3794	CR2	3.025940e-01
3795	CRABP1	1
3796	CRABP2	1
3797	CRADD	1.418370e-01
3798	CRAMP1L	6.655349e-01
3799	CRAT	6.199943e-01
3800	CRB1	7.306579e-02
3801	CRB2	1
3802	CRB3	1
3803	CRBN	4.574851e-01
3804	CRCP	1
3805	CRCT1	1
3806	CREB1	7.364763e-01
3807	CREB3	6.019260e-02
3808	CREB3L1	7.615011e-01
3809	CREB3L2	3.220954e-01
3810	CREB3L3	8.222601e-01
3811	CREB3L4	6.083259e-01
3812	CREB5	3.471755e-01
3813	CREBBP	3.801524e-02
3814	CREBL2	3.898169e-01
3815	CREBZF	8.350854e-01
3816	CREG1	1
3817	CREG2	6.730301e-02
3818	CRELD1	5.777495e-01
3819	CRELD2	7.846457e-01
3820	CREM	2.581447e-02
3821	CRH	1
3822	CRHBP	2.999362e-02
3823	CRHR1	6.079768e-01
3824	CRHR2	1.769710e-01
3825	CRIM1	3.117969e-01
3826	CRIP1	1
3827	CRIP2	1
3828	CRIP3	1
3829	CRIPAK	1
3830	CRIPT	1
3831	CRISP1	1.081815e-02
3832	CRISP2	1
3833	CRISP3	3.752582e-01
3834	CRISPLD1	6.460899e-02
3835	CRISPLD2	6.261359e-01
3836	CRK	1
3837	CRKL	5.489294e-01
3838	CRLF1	6.468152e-01
3839	CRLF3	8.701038e-01
3840	CRLS1	1
3841	CRMP1	4.974320e-02
3842	CRNKL1	1.603009e-01
3843	CRNN	1.226958e-01
3844	CROCC	1
3845	CROT	6.831132e-01
3846	CRP	1
3847	CRTAC1	3.204014e-01
3848	CRTAM	4.115519e-02
3849	CRTAP	7.117423e-01
3850	CRTC1	1.961931e-02
3851	CRTC2	6.489574e-01
3852	CRTC3	8.216200e-01
3853	CRX	6.594951e-01
3854	CRY1	5.843453e-01
3855	CRY2	9.417612e-01
3856	CRYAA	1
3857	CRYAB	3.900095e-01
3858	CRYBA1	1
3859	CRYBA2	1
3860	CRYBA4	2.010653e-02
3861	CRYBB1	4.615995e-02
3862	CRYBB2	1
3863	CRYBB3	4.024117e-01
3864	CRYBG3	2.182800e-01
3865	CRYGA	1
3866	CRYGB	9.442629e-02
3867	CRYGC	1.536695e-01
3868	CRYGD	1
3869	CRYGN	2.490493e-01
3870	CRYGS	1.946274e-01
3871	CRYL1	8.967510e-03
3872	CRYM	1
3873	CRYZ	1
3874	CRYZL1	1
3875	CS	1
3876	CSAD	8.080150e-01
Done

Running MutSig 2:
Scatter job 43: processing genes 3787 - 3876
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CREBBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.058452e-02	ci left: 2.860725e-01	ci right 3.040471e-01	k: 2950	n:10000
Cons ci ratio: 2.719853e-02	ci left: 6.657201e-01	ci right 6.841779e-01	k: 6750	n:10000
KS ci ratio: 8.552514e-02	ci left: 1.661239e-01	ci right 1.810667e-01	k: 1735	n:10000
CREBBP   10000 perm   3 sec   (3545 perm/sec)   p_kst 1.735000e-01   p_cons 6.750000e-01   p_joint 2.950000e-01

Outputting figure to mutsig2_images.part000000000043/CREBBP.25_7453_10000_0.1735_0.675_0.295.png
                gene_name: CREBBP
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 2 percent done.
CPXM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.167205e-02	ci left: 7.574741e-01	ci right 7.741708e-01	k: 7659	n:10000
KS ci ratio: 1.107050e-02	ci left: 9.209006e-01	ci right 9.312496e-01	k: 9262	n:10000
CPXM2   10000 perm   2 sec   (5590 perm/sec)   p_kst 9.262000e-01   p_cons 7.659000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CPXM2.12_2327_10000_0.9262_0.7659_1.png
                gene_name: CPXM2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
CR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.417193e-02	ci left: 7.156290e-01	ci right 7.332401e-01	k: 7245	n:10000
Cons ci ratio: 4.908768e-02	ci left: 3.797268e-01	ci right 3.989377e-01	k: 3893	n:10000
KS ci ratio: 2.473563e-02	ci left: 7.062425e-01	ci right 7.240320e-01	k: 7152	n:10000
CR2   10000 perm   2 sec   (5584 perm/sec)   p_kst 7.152000e-01   p_cons 3.893000e-01   p_joint 7.245000e-01

Outputting figure to mutsig2_images.part000000000043/CR2.11_3355_10000_0.7152_0.3893_0.7245.png
                gene_name: CR2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 6 percent done.
CPXCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.840307e-02	ci left: 3.863960e-01	ci right 4.056646e-01	k: 3960	n:10000
Cons ci ratio: 9.584355e-02	ci left: 1.363893e-01	ci right 1.502192e-01	k: 1432	n:10000
KS ci ratio: 9.252758e-03	ci left: 9.427388e-01	ci right 9.515984e-01	k: 9473	n:10000
CPXCR1   10000 perm   2 sec   (6258 perm/sec)   p_kst 9.473000e-01   p_cons 1.432000e-01   p_joint 3.960000e-01

Outputting figure to mutsig2_images.part000000000043/CPXCR1.10_910_10000_0.9473_0.1432_0.396.png
                gene_name: CPXCR1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 8 percent done.
CR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.489098e-02	ci left: 5.481004e-01	ci right 5.676658e-01	k: 5579	n:10000
KS ci ratio: 1.235470e-02	ci left: 9.039125e-01	ci right 9.152476e-01	k: 9097	n:10000
CR1   10000 perm   2 sec   (4262 perm/sec)   p_kst 9.097000e-01   p_cons 5.579000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CR1.10_7658_10000_0.9097_0.5579_1.png
                gene_name: CR1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
CRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.473563e-02	ci left: 7.062425e-01	ci right 7.240320e-01	k: 7152	n:10000
Cons ci ratio: 6.184739e-03	ci left: 9.725959e-01	ci right 9.787227e-01	k: 9758	n:10000
KS ci ratio: 4.076154e-02	ci left: 4.705646e-01	ci right 4.902468e-01	k: 4804	n:10000
CRB1   10000 perm   2 sec   (5304 perm/sec)   p_kst 4.804000e-01   p_cons 9.758000e-01   p_joint 7.152000e-01

Outputting figure to mutsig2_images.part000000000043/CRB1.10_4269_10000_0.4804_0.9758_0.7152.png
                gene_name: CRB1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 12 percent done.
CRIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.578324e-02	ci left: 6.888946e-01	ci right 7.069900e-01	k: 6980	n:10000
KS ci ratio: 1.573306e-02	ci left: 8.543705e-01	ci right 8.680184e-01	k: 8613	n:10000
CRIM1   10000 perm   2 sec   (5731 perm/sec)   p_kst 8.613000e-01   p_cons 6.980000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CRIM1.9_3179_10000_0.8613_0.698_1.png
                gene_name: CRIM1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
CRMP1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.343015e-01	ci left: 7.320496e-02	ci right 8.384211e-02	k: 784	n:10000
Cons ci ratio: 3.144643e-01	ci left: 1.289402e-02	ci right 1.779424e-02	k: 152	n:10000
KS ci ratio: 3.607332e-02	ci left: 5.315730e-01	ci right 5.512029e-01	k: 5414	n:10000
CRMP1   10000 perm   2 sec   (6126 perm/sec)   p_kst 5.414000e-01   p_cons 1.520000e-02   p_joint 7.840000e-02

Joint ci ratio: 1.282881e-01	ci left: 4.173208e-02	ci right 4.750125e-02	k: 891	n:20000
Cons ci ratio: 2.405811e-01	ci left: 1.152325e-02	ci right 1.472062e-02	k: 261	n:20000
KS ci ratio: 2.633209e-02	ci left: 5.186513e-01	ci right 5.325413e-01	k: 10512	n:20000
CRMP1   20000 perm   4 sec   (5506 perm/sec)   p_kst 5.256000e-01   p_cons 1.305000e-02   p_joint 4.455000e-02

Joint ci ratio: 8.934188e-02	ci left: 5.759973e-02	ci right 6.301914e-02	k: 1808	n:30000
Cons ci ratio: 1.910866e-01	ci left: 1.251047e-02	ci right 1.518490e-02	k: 414	n:30000
KS ci ratio: 2.233126e-02	ci left: 5.009922e-01	ci right 5.123399e-01	k: 15200	n:30000
CRMP1   30000 perm   6 sec   (5283 perm/sec)   p_kst 5.066667e-01   p_cons 1.380000e-02   p_joint 6.026667e-02

Joint ci ratio: 6.653397e-02	ci left: 7.718710e-02	ci right 8.252408e-02	k: 3193	n:40000
Cons ci ratio: 1.647833e-01	ci left: 1.279955e-02	ci right 1.512180e-02	k: 557	n:40000
KS ci ratio: 1.937517e-02	ci left: 5.008376e-01	ci right 5.106615e-01	k: 20230	n:40000
CRMP1   40000 perm   8 sec   (5120 perm/sec)   p_kst 5.057500e-01   p_cons 1.392500e-02   p_joint 7.982500e-02

Joint ci ratio: 6.721019e-02	ci left: 6.155507e-02	ci right 6.585576e-02	k: 3184	n:50000
Cons ci ratio: 1.364421e-01	ci left: 1.513092e-02	ci right 1.736575e-02	k: 811	n:50000
KS ci ratio: 1.730590e-02	ci left: 5.020475e-01	ci right 5.108318e-01	k: 25322	n:50000
CRMP1   50000 perm   10 sec   (4982 perm/sec)   p_kst 5.064400e-01   p_cons 1.622000e-02   p_joint 6.368000e-02

Joint ci ratio: 5.660362e-02	ci left: 7.191774e-02	ci right 7.612357e-02	k: 4440	n:60000
Cons ci ratio: 1.235527e-01	ci left: 1.547964e-02	ci right 1.753417e-02	k: 989	n:60000
KS ci ratio: 1.581731e-02	ci left: 5.018243e-01	ci right 5.098418e-01	k: 30350	n:60000
CRMP1   60000 perm   12 sec   (4868 perm/sec)   p_kst 5.058333e-01   p_cons 1.648333e-02   p_joint 7.400000e-02

Joint ci ratio: 5.402783e-02	ci left: 6.805005e-02	ci right 7.184283e-02	k: 4895	n:70000
Cons ci ratio: 1.140368e-01	ci left: 1.565255e-02	ci right 1.755925e-02	k: 1161	n:70000
KS ci ratio: 1.470162e-02	ci left: 5.001603e-01	ci right 5.075822e-01	k: 35271	n:70000
CRMP1   70000 perm   15 sec   (4769 perm/sec)   p_kst 5.038714e-01   p_cons 1.658571e-02   p_joint 6.992857e-02

Joint ci ratio: 5.247764e-02	ci left: 6.348644e-02	ci right 6.692017e-02	k: 5215	n:80000
Cons ci ratio: 1.066310e-01	ci left: 1.572595e-02	ci right 1.750936e-02	k: 1328	n:80000
KS ci ratio: 1.374998e-02	ci left: 5.004790e-01	ci right 5.074207e-01	k: 40316	n:80000
CRMP1   80000 perm   17 sec   (4680 perm/sec)   p_kst 5.039500e-01   p_cons 1.660000e-02   p_joint 6.518750e-02

Joint ci ratio: 4.995625e-02	ci left: 6.243145e-02	ci right 6.564116e-02	k: 5762	n:90000
Cons ci ratio: 1.011232e-01	ci left: 1.559112e-02	ci right 1.726248e-02	k: 1477	n:90000
KS ci ratio: 1.297530e-02	ci left: 5.002278e-01	ci right 5.067719e-01	k: 45315	n:90000
CRMP1   90000 perm   20 sec   (4590 perm/sec)   p_kst 5.035000e-01   p_cons 1.641111e-02   p_joint 6.402222e-02

Joint ci ratio: 4.512774e-02	ci left: 6.857453e-02	ci right 7.175046e-02	k: 7015	n:100000
Cons ci ratio: 9.570380e-02	ci left: 1.570974e-02	ci right 1.729849e-02	k: 1649	n:100000
KS ci ratio: 1.229988e-02	ci left: 5.007860e-01	ci right 5.069937e-01	k: 50389	n:100000
CRMP1   100000 perm   22 sec   (4509 perm/sec)   p_kst 5.038900e-01   p_cons 1.649000e-02   p_joint 7.015000e-02

Outputting figure to mutsig2_images.part000000000043/CRMP1.7_2160_100000_0.50389_0.01649_0.07015.png
                gene_name: CRMP1
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.072 

Current progress: 16 percent done.
CRNKL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.169468e-01	ci left: 9.506351e-02	ci right 1.069701e-01	k: 1009	n:10000
Cons ci ratio: 7.864387e-02	ci left: 1.911149e-01	ci right 2.068608e-01	k: 1989	n:10000
KS ci ratio: 1.529928e-01	ci left: 5.686952e-02	ci right 6.638783e-02	k: 615	n:10000
CRNKL1   10000 perm   2 sec   (5225 perm/sec)   p_kst 6.150000e-02   p_cons 1.989000e-01   p_joint 1.009000e-01

Joint ci ratio: 9.243538e-02	ci left: 7.867398e-02	ci right 8.634791e-02	k: 1649	n:20000
Cons ci ratio: 5.257494e-02	ci left: 2.117494e-01	ci right 2.232329e-01	k: 4349	n:20000
KS ci ratio: 1.063564e-01	ci left: 6.020772e-02	ci right 6.701982e-02	k: 1271	n:20000
CRNKL1   20000 perm   4 sec   (4751 perm/sec)   p_kst 6.355000e-02   p_cons 2.174500e-01   p_joint 8.245000e-02

Joint ci ratio: 7.154321e-02	ci left: 8.770292e-02	ci right 9.424321e-02	k: 2728	n:30000
Cons ci ratio: 4.297793e-02	ci left: 2.124126e-01	ci right 2.217756e-01	k: 6512	n:30000
KS ci ratio: 8.611952e-02	ci left: 6.181128e-02	ci right 6.740673e-02	k: 1937	n:30000
CRNKL1   30000 perm   7 sec   (4515 perm/sec)   p_kst 6.456667e-02   p_cons 2.170667e-01   p_joint 9.093333e-02

Outputting figure to mutsig2_images.part000000000043/CRNKL1.8_2607_30000_0.064567_0.21707_0.090933.png
                gene_name: CRNKL1
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.094 

Current progress: 18 percent done.
CRYBG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.284305e-02	ci left: 4.458030e-01	ci right 4.654229e-01	k: 4556	n:10000
Cons ci ratio: 9.572663e-02	ci left: 1.366833e-01	ci right 1.505251e-01	k: 1435	n:10000
KS ci ratio: 3.595726e-02	ci left: 5.331752e-01	ci right 5.527998e-01	k: 5430	n:10000
CRYBG3   10000 perm   2 sec   (5835 perm/sec)   p_kst 5.430000e-01   p_cons 1.435000e-01   p_joint 4.556000e-01

Outputting figure to mutsig2_images.part000000000043/CRYBG3.8_3145_10000_0.543_0.1435_0.4556.png
                gene_name: CRYBG3
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 20 percent done.
CRYBB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.198857e-01	ci left: 2.740624e-02	ci right 3.427066e-02	k: 307	n:10000
Cons ci ratio: 2.513066e-02	ci left: 6.996848e-01	ci right 7.175935e-01	k: 7087	n:10000
KS ci ratio: 3.805205e-01	ci left: 8.505237e-03	ci right 1.258745e-02	k: 104	n:10000
CRYBB1   10000 perm   1 sec   (7196 perm/sec)   p_kst 1.040000e-02   p_cons 7.087000e-01   p_joint 3.070000e-02

Joint ci ratio: 1.318068e-01	ci left: 3.955227e-02	ci right 4.518176e-02	k: 846	n:20000
Cons ci ratio: 1.780062e-02	ci left: 7.016436e-01	ci right 7.142959e-01	k: 14160	n:20000
KS ci ratio: 2.499297e-01	ci left: 1.063101e-02	ci right 1.371326e-02	k: 242	n:20000
CRYBB1   20000 perm   3 sec   (6351 perm/sec)   p_kst 1.210000e-02   p_cons 7.080000e-01   p_joint 4.230000e-02

Joint ci ratio: 1.194267e-01	ci left: 3.259274e-02	ci right 3.676467e-02	k: 1039	n:30000
Cons ci ratio: 1.463508e-02	ci left: 6.999371e-01	ci right 7.102898e-01	k: 21154	n:30000
KS ci ratio: 2.080031e-01	ci left: 1.048237e-02	ci right 1.294689e-02	k: 350	n:30000
CRYBB1   30000 perm   5 sec   (6020 perm/sec)   p_kst 1.166667e-02   p_cons 7.051333e-01   p_joint 3.463333e-02

Joint ci ratio: 9.690556e-02	ci left: 3.739241e-02	ci right 4.122484e-02	k: 1571	n:40000
Cons ci ratio: 1.268000e-02	ci left: 7.004534e-01	ci right 7.094169e-01	k: 28198	n:40000
KS ci ratio: 1.815153e-01	ci left: 1.047823e-02	ci right 1.259358e-02	k: 460	n:40000
CRYBB1   40000 perm   7 sec   (5802 perm/sec)   p_kst 1.150000e-02   p_cons 7.049500e-01   p_joint 3.927500e-02

Joint ci ratio: 8.508753e-02	ci left: 3.898475e-02	ci right 4.246883e-02	k: 2035	n:50000
Cons ci ratio: 1.130076e-02	ci left: 7.024265e-01	ci right 7.104295e-01	k: 35322	n:50000
KS ci ratio: 1.632506e-01	ci left: 1.046874e-02	ci right 1.234863e-02	k: 569	n:50000
CRYBB1   50000 perm   9 sec   (5631 perm/sec)   p_kst 1.138000e-02   p_cons 7.064400e-01   p_joint 4.070000e-02

Joint ci ratio: 9.699561e-02	ci left: 2.521316e-02	ci right 2.779958e-02	k: 1589	n:60000
Cons ci ratio: 1.047946e-02	ci left: 6.961982e-01	ci right 7.035491e-01	k: 41993	n:60000
KS ci ratio: 1.483701e-01	ci left: 1.064618e-02	ci right 1.236822e-02	k: 689	n:60000
CRYBB1   60000 perm   11 sec   (5498 perm/sec)   p_kst 1.148333e-02   p_cons 6.998833e-01   p_joint 2.648333e-02

Joint ci ratio: 9.017580e-02	ci left: 2.509911e-02	ci right 2.748323e-02	k: 1839	n:70000
Cons ci ratio: 9.530124e-03	ci left: 7.039567e-01	ci right 7.107118e-01	k: 49514	n:70000
KS ci ratio: 1.377977e-01	ci left: 1.064053e-02	ci right 1.222893e-02	k: 799	n:70000
CRYBB1   70000 perm   13 sec   (5378 perm/sec)   p_kst 1.141429e-02   p_cons 7.073429e-01   p_joint 2.627143e-02

Joint ci ratio: 7.959666e-02	ci left: 2.825253e-02	ci right 3.060676e-02	k: 2353	n:80000
Cons ci ratio: 8.927927e-03	ci left: 7.035565e-01	ci right 7.098785e-01	k: 56538	n:80000
KS ci ratio: 1.282109e-01	ci left: 1.080899e-02	ci right 1.230175e-02	k: 923	n:80000
CRYBB1   80000 perm   15 sec   (5271 perm/sec)   p_kst 1.153750e-02   p_cons 7.067250e-01   p_joint 2.941250e-02

Joint ci ratio: 7.621250e-02	ci left: 2.746618e-02	ci right 2.965324e-02	k: 2569	n:90000
Cons ci ratio: 8.405888e-03	ci left: 7.043040e-01	ci right 7.102604e-01	k: 63656	n:90000
KS ci ratio: 1.210258e-01	ci left: 1.082443e-02	ci right 1.222954e-02	k: 1036	n:90000
CRYBB1   90000 perm   17 sec   (5156 perm/sec)   p_kst 1.151111e-02   p_cons 7.072889e-01   p_joint 2.854444e-02

Joint ci ratio: 7.375750e-02	ci left: 2.645586e-02	ci right 2.849167e-02	k: 2746	n:100000
Cons ci ratio: 7.973931e-03	ci left: 7.044890e-01	ci right 7.101390e-01	k: 70732	n:100000
KS ci ratio: 1.156415e-01	ci left: 1.070265e-02	ci right 1.202592e-02	k: 1135	n:100000
CRYBB1   100000 perm   20 sec   (5055 perm/sec)   p_kst 1.135000e-02   p_cons 7.073200e-01   p_joint 2.746000e-02

Joint ci ratio: 7.163626e-02	ci left: 2.554985e-02	ci right 2.745704e-02	k: 2914	n:110000
Cons ci ratio: 7.606220e-03	ci left: 7.044371e-01	ci right 7.098247e-01	k: 77785	n:110000
KS ci ratio: 1.095352e-01	ci left: 1.087829e-02	ci right 1.214766e-02	k: 1265	n:110000
CRYBB1   110000 perm   22 sec   (4914 perm/sec)   p_kst 1.150000e-02   p_cons 7.071364e-01   p_joint 2.649091e-02

Joint ci ratio: 6.043253e-02	ci left: 3.285034e-02	ci right 3.490560e-02	k: 4064	n:120000
Cons ci ratio: 7.277037e-03	ci left: 7.048585e-01	ci right 7.100148e-01	k: 84893	n:120000
KS ci ratio: 1.044175e-01	ci left: 1.100183e-02	ci right 1.222195e-02	k: 1392	n:120000
CRYBB1   120000 perm   25 sec   (4819 perm/sec)   p_kst 1.160000e-02   p_cons 7.074417e-01   p_joint 3.386667e-02

Joint ci ratio: 5.895975e-02	ci left: 3.191420e-02	ci right 3.386056e-02	k: 4274	n:130000
Cons ci ratio: 6.994595e-03	ci left: 7.047796e-01	ci right 7.097342e-01	k: 91944	n:130000
KS ci ratio: 9.975694e-02	ci left: 1.115254e-02	ci right 1.233093e-02	k: 1525	n:130000
CRYBB1   130000 perm   27 sec   (4738 perm/sec)   p_kst 1.173077e-02   p_cons 7.072615e-01   p_joint 3.287692e-02

Outputting figure to mutsig2_images.part000000000043/CRYBB1.7_779_130000_0.011731_0.70726_0.032877.png
                gene_name: CRYBB1
               theta_stop: 0.100 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 22 percent done.
CPXM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.431475e-02	ci left: 5.563181e-01	ci right 5.758434e-01	k: 5661	n:10000
Cons ci ratio: 6.321963e-02	ci left: 2.688388e-01	ci right 2.864909e-01	k: 2776	n:10000
KS ci ratio: 1.173608e-02	ci left: 9.122441e-01	ci right 9.231112e-01	k: 9178	n:10000
CPXM1   10000 perm   2 sec   (6177 perm/sec)   p_kst 9.178000e-01   p_cons 2.776000e-01   p_joint 5.661000e-01

Outputting figure to mutsig2_images.part000000000043/CPXM1.6_2261_10000_0.9178_0.2776_0.5661.png
                gene_name: CPXM1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 24 percent done.
CPZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.334730e-01	ci left: 7.407714e-02	ci right 8.476939e-02	k: 793	n:10000
Cons ci ratio: 5.487243e-02	ci left: 3.285285e-01	ci right 3.471661e-01	k: 3378	n:10000
KS ci ratio: 1.775008e-01	ci left: 4.235985e-02	ci right 5.070688e-02	k: 464	n:10000
CPZ   10000 perm   2 sec   (5945 perm/sec)   p_kst 4.640000e-02   p_cons 3.378000e-01   p_joint 7.930000e-02

Joint ci ratio: 7.800854e-02	ci left: 1.077101e-01	ci right 1.165030e-01	k: 2241	n:20000
Cons ci ratio: 3.926034e-02	ci left: 3.260701e-01	ci right 3.391786e-01	k: 6652	n:20000
KS ci ratio: 1.242589e-01	ci left: 4.444751e-02	ci right 5.038496e-02	k: 947	n:20000
CPZ   20000 perm   4 sec   (5381 perm/sec)   p_kst 4.735000e-02   p_cons 3.326000e-01   p_joint 1.120500e-01

Joint ci ratio: 7.170229e-02	ci left: 8.734220e-02	ci right 9.387067e-02	k: 2717	n:30000
Cons ci ratio: 3.198028e-02	ci left: 3.283306e-01	ci right 3.390349e-01	k: 10010	n:30000
KS ci ratio: 9.995417e-02	ci left: 4.632405e-02	ci right 5.123048e-02	k: 1462	n:30000
CPZ   30000 perm   6 sec   (5168 perm/sec)   p_kst 4.873333e-02   p_cons 3.336667e-01   p_joint 9.056667e-02

Outputting figure to mutsig2_images.part000000000043/CPZ.6_2003_30000_0.048733_0.33367_0.090567.png
                gene_name: CPZ
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.094 

Current progress: 25 percent done.
CRTC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.344190e-01	ci left: 2.400584e-02	ci right 3.047352e-02	k: 271	n:10000
KS ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
CRTC1   10000 perm   2 sec   (6627 perm/sec)   p_kst 1.200000e-03   p_cons 2.710000e-02   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 1.615388e-01	ci left: 2.628568e-02	ci right 3.095271e-02	k: 571	n:20000
KS ci ratio: 8.549436e-01	ci left: 6.109296e-04	ci right 1.543998e-03	k: 20	n:20000
CRTC1   20000 perm   3 sec   (5896 perm/sec)   p_kst 1.000000e-03   p_cons 2.855000e-02   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 1.345013e-01	ci left: 2.567866e-02	ci right 2.941359e-02	k: 825	n:30000
KS ci ratio: 7.036772e-01	ci left: 6.747943e-04	ci right 1.427257e-03	k: 30	n:30000
CRTC1   30000 perm   5 sec   (5524 perm/sec)   p_kst 1.000000e-03   p_cons 2.750000e-02   p_joint 0

Joint ci ratio: 4.434141e-01	ci left: 1.519469e-03	ci right 2.405341e-03	k: 77	n:40000
Cons ci ratio: 1.116410e-01	ci left: 2.822835e-02	ci right 3.159035e-02	k: 1195	n:40000
KS ci ratio: 6.273885e-01	ci left: 6.723615e-04	ci right 1.303718e-03	k: 38	n:40000
CRTC1   40000 perm   7 sec   (5372 perm/sec)   p_kst 9.500000e-04   p_cons 2.987500e-02   p_joint 1.925000e-03

Joint ci ratio: 3.273345e-01	ci left: 2.392621e-03	ci right 3.346552e-03	k: 142	n:50000
Cons ci ratio: 9.978618e-02	ci left: 2.844404e-02	ci right 3.145086e-02	k: 1496	n:50000
KS ci ratio: 5.433180e-01	ci left: 7.595484e-04	ci right 1.340896e-03	k: 51	n:50000
CRTC1   50000 perm   10 sec   (5261 perm/sec)   p_kst 1.020000e-03   p_cons 2.992000e-02   p_joint 2.840000e-03

Joint ci ratio: 4.248789e-01	ci left: 1.116844e-03	ci right 1.733006e-03	k: 84	n:60000
Cons ci ratio: 8.766451e-02	ci left: 3.083444e-02	ci right 3.367771e-02	k: 1934	n:60000
KS ci ratio: 5.016452e-01	ci left: 7.631894e-04	ci right 1.287013e-03	k: 60	n:60000
CRTC1   60000 perm   12 sec   (5128 perm/sec)   p_kst 1.000000e-03   p_cons 3.223333e-02   p_joint 1.400000e-03

Joint ci ratio: 4.353004e-01	ci left: 9.063154e-04	ci right 1.422186e-03	k: 80	n:70000
Cons ci ratio: 8.130131e-02	ci left: 3.083452e-02	ci right 3.346159e-02	k: 2249	n:70000
KS ci ratio: 4.786716e-01	ci left: 7.292784e-04	ci right 1.199391e-03	k: 66	n:70000
CRTC1   70000 perm   14 sec   (5017 perm/sec)   p_kst 9.428571e-04   p_cons 3.212857e-02   p_joint 1.142857e-03

Joint ci ratio: 4.554771e-01	ci left: 7.153204e-04	ci right 1.147197e-03	k: 73	n:80000
Cons ci ratio: 7.593505e-02	ci left: 3.101200e-02	ci right 3.347207e-02	k: 2578	n:80000
KS ci ratio: 4.650090e-01	ci left: 6.821670e-04	ci right 1.105382e-03	k: 70	n:80000
CRTC1   80000 perm   16 sec   (4919 perm/sec)   p_kst 8.750000e-04   p_cons 3.222500e-02   p_joint 9.125000e-04

Joint ci ratio: 3.462339e-01	ci left: 1.176511e-03	ci right 1.678730e-03	k: 127	n:90000
Cons ci ratio: 7.184053e-02	ci left: 3.087062e-02	ci right 3.318189e-02	k: 2881	n:90000
KS ci ratio: 4.353571e-01	ci left: 7.048946e-04	ci right 1.106179e-03	k: 80	n:90000
CRTC1   90000 perm   19 sec   (4792 perm/sec)   p_kst 8.888889e-04   p_cons 3.201111e-02   p_joint 1.411111e-03

Joint ci ratio: 4.041250e-01	ci left: 7.506936e-04	ci right 1.139194e-03	k: 93	n:100000
Cons ci ratio: 6.792661e-02	ci left: 3.113413e-02	ci right 3.333312e-02	k: 3222	n:100000
KS ci ratio: 4.107386e-01	ci left: 7.237665e-04	ci right 1.106139e-03	k: 90	n:100000
CRTC1   100000 perm   21 sec   (4690 perm/sec)   p_kst 9.000000e-04   p_cons 3.222000e-02   p_joint 9.300000e-04

Joint ci ratio: 4.201000e-01	ci left: 6.253997e-04	ci right 9.654504e-04	k: 86	n:110000
Cons ci ratio: 6.486294e-02	ci left: 3.109300e-02	ci right 3.318630e-02	k: 3534	n:110000
KS ci ratio: 3.918200e-01	ci left: 7.315339e-04	ci right 1.095610e-03	k: 99	n:110000
CRTC1   110000 perm   24 sec   (4580 perm/sec)   p_kst 9.000000e-04   p_cons 3.212727e-02   p_joint 7.818182e-04

Joint ci ratio: 4.130476e-01	ci left: 5.956603e-04	ci right 9.126066e-04	k: 89	n:120000
Cons ci ratio: 6.220466e-02	ci left: 3.103598e-02	ci right 3.303672e-02	k: 3843	n:120000
KS ci ratio: 3.787901e-01	ci left: 7.232559e-04	ci right 1.068267e-03	k: 106	n:120000
CRTC1   120000 perm   27 sec   (4505 perm/sec)   p_kst 8.833333e-04   p_cons 3.202500e-02   p_joint 7.416667e-04

Joint ci ratio: 4.107822e-01	ci left: 5.567328e-04	ci right 8.508962e-04	k: 90	n:130000
Cons ci ratio: 5.982619e-02	ci left: 3.101197e-02	ci right 3.293206e-02	k: 4155	n:130000
KS ci ratio: 3.607001e-01	ci left: 7.443796e-04	ci right 1.078530e-03	k: 117	n:130000
CRTC1   130000 perm   29 sec   (4437 perm/sec)   p_kst 9.000000e-04   p_cons 3.196154e-02   p_joint 6.923077e-04

Joint ci ratio: 3.999447e-01	ci left: 5.490384e-04	ci right 8.294558e-04	k: 95	n:140000
Cons ci ratio: 5.750871e-02	ci left: 3.119690e-02	ci right 3.305112e-02	k: 4496	n:140000
KS ci ratio: 3.397444e-01	ci left: 7.889387e-04	ci right 1.118010e-03	k: 132	n:140000
CRTC1   140000 perm   32 sec   (4367 perm/sec)   p_kst 9.428571e-04   p_cons 3.211429e-02   p_joint 6.785714e-04

Joint ci ratio: 2.231326e-01	ci left: 1.824300e-03	ci right 2.288618e-03	k: 307	n:150000
Cons ci ratio: 5.551238e-02	ci left: 3.127948e-02	ci right 3.307200e-02	k: 4825	n:150000
KS ci ratio: 3.013675e-01	ci left: 9.571146e-04	ci right 1.302635e-03	k: 168	n:150000
CRTC1   150000 perm   35 sec   (4300 perm/sec)   p_kst 1.120000e-03   p_cons 3.216667e-02   p_joint 2.046667e-03

Joint ci ratio: 1.881275e-01	ci left: 2.451661e-03	ci right 2.966622e-03	k: 432	n:160000
Cons ci ratio: 5.375899e-02	ci left: 3.129719e-02	ci right 3.303231e-02	k: 5145	n:160000
KS ci ratio: 2.928297e-01	ci left: 9.551376e-04	ci right 1.288365e-03	k: 178	n:160000
CRTC1   160000 perm   38 sec   (4234 perm/sec)   p_kst 1.112500e-03   p_cons 3.215625e-02   p_joint 2.700000e-03

Joint ci ratio: 1.896860e-01	ci left: 2.268196e-03	ci right 2.749021e-03	k: 425	n:170000
Cons ci ratio: 5.221621e-02	ci left: 3.124972e-02	ci right 3.293099e-02	k: 5454	n:170000
KS ci ratio: 2.872702e-01	ci left: 9.371329e-04	ci right 1.256744e-03	k: 185	n:170000
CRTC1   170000 perm   41 sec   (4173 perm/sec)   p_kst 1.088235e-03   p_cons 3.208235e-02   p_joint 2.500000e-03

Joint ci ratio: 2.011442e-01	ci left: 1.893800e-03	ci right 2.322489e-03	k: 378	n:180000
Cons ci ratio: 4.910388e-02	ci left: 3.335416e-02	ci right 3.503866e-02	k: 6154	n:180000
KS ci ratio: 2.812871e-01	ci left: 9.263455e-04	ci right 1.234531e-03	k: 193	n:180000
CRTC1   180000 perm   44 sec   (4107 perm/sec)   p_kst 1.072222e-03   p_cons 3.418889e-02   p_joint 2.100000e-03

Joint ci ratio: 1.955483e-01	ci left: 1.904167e-03	ci right 2.321783e-03	k: 400	n:190000
Cons ci ratio: 4.776356e-02	ci left: 3.341850e-02	ci right 3.505891e-02	k: 6504	n:190000
KS ci ratio: 2.770392e-01	ci left: 9.069576e-04	ci right 1.203342e-03	k: 199	n:190000
CRTC1   190000 perm   47 sec   (4049 perm/sec)   p_kst 1.047368e-03   p_cons 3.423158e-02   p_joint 2.105263e-03

Joint ci ratio: 1.960491e-01	ci left: 1.799439e-03	ci right 2.195218e-03	k: 398	n:200000
Cons ci ratio: 4.654490e-02	ci left: 3.345224e-02	ci right 3.505129e-02	k: 6849	n:200000
KS ci ratio: 2.697209e-01	ci left: 9.128409e-04	ci right 1.201934e-03	k: 210	n:200000
CRTC1   200000 perm   50 sec   (3996 perm/sec)   p_kst 1.050000e-03   p_cons 3.424500e-02   p_joint 1.990000e-03

Joint ci ratio: 1.970506e-01	ci left: 1.695632e-03	ci right 2.070712e-03	k: 394	n:210000
Cons ci ratio: 4.533677e-02	ci left: 3.359629e-02	ci right 3.515945e-02	k: 7218	n:210000
KS ci ratio: 2.623626e-01	ci left: 9.227054e-04	ci right 1.205643e-03	k: 222	n:210000
CRTC1   210000 perm   53 sec   (3935 perm/sec)   p_kst 1.057143e-03   p_cons 3.437143e-02   p_joint 1.876190e-03

Joint ci ratio: 2.064326e-01	ci left: 1.467481e-03	ci right 1.809501e-03	k: 359	n:220000
Cons ci ratio: 4.426642e-02	ci left: 3.365578e-02	ci right 3.518379e-02	k: 7571	n:220000
KS ci ratio: 2.572243e-01	ci left: 9.190095e-04	ci right 1.194409e-03	k: 231	n:220000
CRTC1   220000 perm   57 sec   (3880 perm/sec)   p_kst 1.050000e-03   p_cons 3.441364e-02   p_joint 1.631818e-03

Joint ci ratio: 2.047381e-01	ci left: 1.428419e-03	ci right 1.758259e-03	k: 365	n:230000
Cons ci ratio: 4.329110e-02	ci left: 3.367607e-02	ci right 3.517048e-02	k: 7916	n:230000
KS ci ratio: 2.513347e-01	ci left: 9.238314e-04	ci right 1.193345e-03	k: 242	n:230000
CRTC1   230000 perm   60 sec   (3830 perm/sec)   p_kst 1.052174e-03   p_cons 3.441739e-02   p_joint 1.586957e-03

Joint ci ratio: 2.221383e-01	ci left: 1.151945e-03	ci right 1.443647e-03	k: 310	n:240000
Cons ci ratio: 4.233245e-02	ci left: 3.376512e-02	ci right 3.522949e-02	k: 8278	n:240000
KS ci ratio: 2.453490e-01	ci left: 9.322276e-04	ci right 1.196726e-03	k: 254	n:240000
CRTC1   240000 perm   63 sec   (3783 perm/sec)   p_kst 1.058333e-03   p_cons 3.449167e-02   p_joint 1.291667e-03

Joint ci ratio: 3.938960e-01	ci left: 3.182556e-04	ci right 4.777020e-04	k: 98	n:250000
Cons ci ratio: 4.594638e-02	ci left: 2.764157e-02	ci right 2.894540e-02	k: 7072	n:250000
KS ci ratio: 2.415899e-01	ci left: 9.249860e-04	ci right 1.182806e-03	k: 262	n:250000
CRTC1   250000 perm   67 sec   (3736 perm/sec)   p_kst 1.048000e-03   p_cons 2.828800e-02   p_joint 3.920000e-04

Joint ci ratio: 4.131320e-01	ci left: 2.749099e-04	ci right 4.212224e-04	k: 89	n:260000
Cons ci ratio: 4.356771e-02	ci left: 2.953789e-02	ci right 3.085723e-02	k: 7850	n:260000
KS ci ratio: 2.375601e-01	ci left: 9.219471e-04	ci right 1.174004e-03	k: 271	n:260000
CRTC1   260000 perm   70 sec   (3688 perm/sec)   p_kst 1.042308e-03   p_cons 3.019231e-02   p_joint 3.423077e-04

Joint ci ratio: 4.276397e-01	ci left: 2.448555e-04	ci right 3.810637e-04	k: 83	n:270000
Cons ci ratio: 4.271539e-02	ci left: 2.960166e-02	ci right 3.089734e-02	k: 8166	n:270000
KS ci ratio: 2.328972e-01	ci left: 9.261411e-04	ci right 1.173659e-03	k: 282	n:270000
CRTC1   270000 perm   74 sec   (3641 perm/sec)   p_kst 1.044444e-03   p_cons 3.024444e-02   p_joint 3.074074e-04

Joint ci ratio: 4.202021e-01	ci left: 2.456818e-04	ci right 3.793052e-04	k: 86	n:280000
Cons ci ratio: 4.195202e-02	ci left: 2.960454e-02	ci right 3.087663e-02	k: 8466	n:280000
KS ci ratio: 2.292806e-01	ci left: 9.233466e-04	ci right 1.165743e-03	k: 291	n:280000
CRTC1   280000 perm   78 sec   (3596 perm/sec)   p_kst 1.039286e-03   p_cons 3.023571e-02   p_joint 3.071429e-04

Joint ci ratio: 4.086227e-01	ci left: 2.526539e-04	ci right 3.852546e-04	k: 91	n:290000
Cons ci ratio: 4.130840e-02	ci left: 2.949477e-02	ci right 3.074223e-02	k: 8733	n:290000
KS ci ratio: 2.258274e-01	ci left: 9.207724e-04	ci right 1.158346e-03	k: 300	n:290000
CRTC1   290000 perm   82 sec   (3546 perm/sec)   p_kst 1.034483e-03   p_cons 3.011379e-02   p_joint 3.137931e-04

Joint ci ratio: 4.021192e-01	ci left: 2.532124e-04	ci right 3.834272e-04	k: 94	n:300000
Cons ci ratio: 4.059365e-02	ci left: 2.953437e-02	ci right 3.076140e-02	k: 9043	n:300000
KS ci ratio: 2.239768e-01	ci left: 9.058070e-04	ci right 1.137340e-03	k: 305	n:300000
CRTC1   300000 perm   86 sec   (3495 perm/sec)   p_kst 1.016667e-03   p_cons 3.014333e-02   p_joint 3.133333e-04

Joint ci ratio: 3.979528e-01	ci left: 2.508467e-04	ci right 3.781562e-04	k: 96	n:310000
Cons ci ratio: 3.991697e-02	ci left: 2.956840e-02	ci right 3.077589e-02	k: 9352	n:310000
KS ci ratio: 2.214593e-01	ci left: 8.979080e-04	ci right 1.124490e-03	k: 312	n:310000
CRTC1   310000 perm   90 sec   (3446 perm/sec)   p_kst 1.006452e-03   p_cons 3.016774e-02   p_joint 3.096774e-04

Joint ci ratio: 4.251266e-01	ci left: 2.093855e-04	ci right 3.249827e-04	k: 84	n:320000
Cons ci ratio: 3.929820e-02	ci left: 2.956332e-02	ci right 3.075146e-02	k: 9649	n:320000
KS ci ratio: 2.183428e-01	ci left: 8.964242e-04	ci right 1.119022e-03	k: 321	n:320000
CRTC1   320000 perm   94 sec   (3401 perm/sec)   p_kst 1.003125e-03   p_cons 3.015312e-02   p_joint 2.625000e-04

Joint ci ratio: 4.202121e-01	ci left: 2.084563e-04	ci right 3.218365e-04	k: 86	n:330000
Cons ci ratio: 3.867328e-02	ci left: 2.960971e-02	ci right 3.078038e-02	k: 9963	n:330000
KS ci ratio: 2.143840e-01	ci left: 9.036535e-04	ci right 1.123442e-03	k: 333	n:330000
CRTC1   330000 perm   98 sec   (3362 perm/sec)   p_kst 1.009091e-03   p_cons 3.019091e-02   p_joint 2.606061e-04

Joint ci ratio: 4.154642e-01	ci left: 2.075891e-04	ci right 3.188683e-04	k: 88	n:340000
Cons ci ratio: 3.809064e-02	ci left: 2.963312e-02	ci right 3.078667e-02	k: 10270	n:340000
KS ci ratio: 2.106329e-01	ci left: 9.104917e-04	ci right 1.127569e-03	k: 345	n:340000
CRTC1   340000 perm   103 sec   (3315 perm/sec)   p_kst 1.014706e-03   p_cons 3.020588e-02   p_joint 2.588235e-04

Joint ci ratio: 3.789022e-01	ci left: 2.479611e-04	ci right 3.662854e-04	k: 106	n:350000
Cons ci ratio: 3.884230e-02	ci left: 2.772763e-02	ci right 2.882877e-02	k: 9896	n:350000
KS ci ratio: 2.070722e-01	ci left: 9.169706e-04	ci right 1.131429e-03	k: 357	n:350000
CRTC1   350000 perm   107 sec   (3274 perm/sec)   p_kst 1.020000e-03   p_cons 2.827429e-02   p_joint 3.028571e-04

Joint ci ratio: 4.131521e-01	ci left: 1.985443e-04	ci right 3.042195e-04	k: 89	n:360000
Cons ci ratio: 3.827924e-02	ci left: 2.776347e-02	ci right 2.884970e-02	k: 10189	n:360000
KS ci ratio: 2.001958e-01	ci left: 9.574056e-04	ci right 1.172977e-03	k: 382	n:360000
CRTC1   360000 perm   111 sec   (3237 perm/sec)   p_kst 1.061111e-03   p_cons 2.830278e-02   p_joint 2.472222e-04

Joint ci ratio: 4.064334e-01	ci left: 2.004505e-04	ci right 3.049369e-04	k: 92	n:370000
Cons ci ratio: 3.770667e-02	ci left: 2.784568e-02	ci right 2.891848e-02	k: 10500	n:370000
KS ci ratio: 1.963859e-01	ci left: 9.700584e-04	ci right 1.183825e-03	k: 397	n:370000
CRTC1   370000 perm   116 sec   (3199 perm/sec)   p_kst 1.072973e-03   p_cons 2.837838e-02   p_joint 2.486486e-04

Joint ci ratio: 3.959282e-01	ci left: 2.070059e-04	ci right 3.113907e-04	k: 97	n:380000
Cons ci ratio: 3.722821e-02	ci left: 2.782197e-02	ci right 2.887997e-02	k: 10772	n:380000
KS ci ratio: 1.939645e-01	ci left: 9.695604e-04	ci right 1.180272e-03	k: 407	n:380000
CRTC1   380000 perm   120 sec   (3158 perm/sec)   p_kst 1.071053e-03   p_cons 2.834737e-02   p_joint 2.552632e-04

Joint ci ratio: 3.939243e-01	ci left: 2.040075e-04	ci right 3.062239e-04	k: 98	n:390000
Cons ci ratio: 3.671452e-02	ci left: 2.787835e-02	ci right 2.892355e-02	k: 11075	n:390000
KS ci ratio: 1.911731e-01	ci left: 9.739859e-04	ci right 1.182259e-03	k: 419	n:390000
CRTC1   390000 perm   125 sec   (3123 perm/sec)   p_kst 1.074359e-03   p_cons 2.839744e-02   p_joint 2.512821e-04

Joint ci ratio: 3.900048e-01	ci left: 2.034145e-04	ci right 3.040588e-04	k: 100	n:400000
Cons ci ratio: 3.626912e-02	ci left: 2.786013e-02	ci right 2.889172e-02	k: 11349	n:400000
KS ci ratio: 1.893787e-01	ci left: 9.686833e-04	ci right 1.173654e-03	k: 427	n:400000
CRTC1   400000 perm   130 sec   (3084 perm/sec)   p_kst 1.067500e-03   p_cons 2.837250e-02   p_joint 2.500000e-04

Joint ci ratio: 4.021364e-01	ci left: 1.852760e-04	ci right 2.805591e-04	k: 94	n:410000
Cons ci ratio: 3.583478e-02	ci left: 2.785013e-02	ci right 2.886874e-02	k: 11626	n:410000
KS ci ratio: 1.869910e-01	ci left: 9.706224e-04	ci right 1.173120e-03	k: 438	n:410000
CRTC1   410000 perm   134 sec   (3053 perm/sec)   p_kst 1.068293e-03   p_cons 2.835610e-02   p_joint 2.292683e-04

Joint ci ratio: 4.064396e-01	ci left: 1.765868e-04	ci right 2.686358e-04	k: 92	n:420000
Cons ci ratio: 3.542334e-02	ci left: 2.782888e-02	ci right 2.883479e-02	k: 11898	n:420000
KS ci ratio: 1.853107e-01	ci left: 9.656721e-04	ci right 1.165124e-03	k: 446	n:420000
CRTC1   420000 perm   139 sec   (3022 perm/sec)   p_kst 1.061905e-03   p_cons 2.832857e-02   p_joint 2.190476e-04

Joint ci ratio: 4.108837e-01	ci left: 1.683070e-04	ci right 2.572619e-04	k: 90	n:430000
Cons ci ratio: 3.501687e-02	ci left: 2.782251e-02	ci right 2.881642e-02	k: 12176	n:430000
KS ci ratio: 1.836750e-01	ci left: 9.609598e-04	ci right 1.157491e-03	k: 454	n:430000
CRTC1   430000 perm   144 sec   (2992 perm/sec)   p_kst 1.055814e-03   p_cons 2.831628e-02   p_joint 2.093023e-04

Joint ci ratio: 4.064416e-01	ci left: 1.685600e-04	ci right 2.564254e-04	k: 92	n:440000
Cons ci ratio: 3.457697e-02	ci left: 2.789087e-02	ci right 2.887445e-02	k: 12487	n:440000
KS ci ratio: 1.811055e-01	ci left: 9.673166e-04	ci right 1.162077e-03	k: 467	n:440000
CRTC1   440000 perm   149 sec   (2961 perm/sec)   p_kst 1.061364e-03   p_cons 2.837955e-02   p_joint 2.090909e-04

Joint ci ratio: 4.021406e-01	ci left: 1.688067e-04	ci right 2.556211e-04	k: 94	n:450000
Cons ci ratio: 3.417936e-02	ci left: 2.791438e-02	ci right 2.888726e-02	k: 12779	n:450000
KS ci ratio: 1.795777e-01	ci left: 9.627958e-04	ci right 1.154833e-03	k: 475	n:450000
CRTC1   450000 perm   154 sec   (2930 perm/sec)   p_kst 1.055556e-03   p_cons 2.839778e-02   p_joint 2.088889e-04

Joint ci ratio: 3.939320e-01	ci left: 1.729623e-04	ci right 2.596257e-04	k: 98	n:460000
Cons ci ratio: 3.381513e-02	ci left: 2.790460e-02	ci right 2.886657e-02	k: 13056	n:460000
KS ci ratio: 1.775379e-01	ci left: 9.647098e-04	ci right 1.154708e-03	k: 486	n:460000
CRTC1   460000 perm   158 sec   (2903 perm/sec)   p_kst 1.056522e-03   p_cons 2.838261e-02   p_joint 2.130435e-04

Joint ci ratio: 3.979742e-01	ci left: 1.654505e-04	ci right 2.494251e-04	k: 96	n:470000
Cons ci ratio: 3.345327e-02	ci left: 2.791006e-02	ci right 2.886172e-02	k: 13340	n:470000
KS ci ratio: 1.755661e-01	ci left: 9.665542e-04	ci right 1.154577e-03	k: 497	n:470000
CRTC1   470000 perm   163 sec   (2875 perm/sec)   p_kst 1.057447e-03   p_cons 2.838298e-02   p_joint 2.042553e-04

Joint ci ratio: 3.939338e-01	ci left: 1.657554e-04	ci right 2.488082e-04	k: 98	n:480000
Cons ci ratio: 3.309278e-02	ci left: 2.793188e-02	ci right 2.887382e-02	k: 13632	n:480000
KS ci ratio: 1.738296e-01	ci left: 9.663400e-04	ci right 1.152267e-03	k: 507	n:480000
CRTC1   480000 perm   169 sec   (2848 perm/sec)   p_kst 1.056250e-03   p_cons 2.840000e-02   p_joint 2.041667e-04

Joint ci ratio: 2.389408e-01	ci left: 4.834259e-04	ci right 6.164729e-04	k: 268	n:490000
Cons ci ratio: 3.274007e-02	ci left: 2.795893e-02	ci right 2.889155e-02	k: 13927	n:490000
KS ci ratio: 1.714822e-01	ci left: 9.739559e-04	ci right 1.158556e-03	k: 521	n:490000
CRTC1   490000 perm   174 sec   (2820 perm/sec)   p_kst 1.063265e-03   p_cons 2.842245e-02   p_joint 5.469388e-04

Joint ci ratio: 2.376200e-01	ci left: 4.793991e-04	ci right 6.105012e-04	k: 271	n:500000
Cons ci ratio: 3.245127e-02	ci left: 2.789566e-02	ci right 2.881781e-02	k: 14177	n:500000
KS ci ratio: 1.706677e-01	ci left: 9.640482e-04	ci right 1.145813e-03	k: 526	n:500000
CRTC1   500000 perm   179 sec   (2788 perm/sec)   p_kst 1.052000e-03   p_cons 2.835400e-02   p_joint 5.420000e-04

Joint ci ratio: 2.342003e-01	ci left: 4.847584e-04	ci right 6.151420e-04	k: 279	n:510000
Cons ci ratio: 3.210935e-02	ci left: 2.793802e-02	ci right 2.885166e-02	k: 14480	n:510000
KS ci ratio: 1.687569e-01	ci left: 9.676754e-04	ci right 1.147874e-03	k: 538	n:510000
CRTC1   510000 perm   185 sec   (2760 perm/sec)   p_kst 1.054902e-03   p_cons 2.839216e-02   p_joint 5.470588e-04

Joint ci ratio: 2.459024e-01	ci left: 4.284400e-04	ci right 5.503147e-04	k: 253	n:520000
Cons ci ratio: 3.178464e-02	ci left: 2.796735e-02	ci right 2.887253e-02	k: 14777	n:520000
KS ci ratio: 1.670608e-01	ci left: 9.693313e-04	ci right 1.147841e-03	k: 549	n:520000
CRTC1   520000 perm   190 sec   (2733 perm/sec)   p_kst 1.055769e-03   p_cons 2.841731e-02   p_joint 4.865385e-04

Joint ci ratio: 2.567510e-01	ci left: 3.832268e-04	ci right 4.978212e-04	k: 232	n:530000
Cons ci ratio: 3.149110e-02	ci left: 2.795817e-02	ci right 2.885454e-02	k: 15054	n:530000
KS ci ratio: 1.663074e-01	ci left: 9.600820e-04	ci right 1.136011e-03	k: 554	n:530000
CRTC1   530000 perm   196 sec   (2702 perm/sec)   p_kst 1.045283e-03   p_cons 2.840377e-02   p_joint 4.377358e-04

Joint ci ratio: 2.545752e-01	ci left: 3.830628e-04	ci right 4.964833e-04	k: 236	n:540000
Cons ci ratio: 3.123176e-02	ci left: 2.790342e-02	ci right 2.879054e-02	k: 15306	n:540000
KS ci ratio: 1.645379e-01	ci left: 9.636051e-04	ci right 1.138115e-03	k: 566	n:540000
CRTC1   540000 perm   202 sec   (2676 perm/sec)   p_kst 1.048148e-03   p_cons 2.834444e-02   p_joint 4.370370e-04

Joint ci ratio: 2.519315e-01	ci left: 3.846120e-04	ci right 4.971230e-04	k: 241	n:550000
Cons ci ratio: 3.095722e-02	ci left: 2.788859e-02	ci right 2.876730e-02	k: 15579	n:550000
KS ci ratio: 1.622636e-01	ci left: 9.739868e-04	ci right 1.147701e-03	k: 582	n:550000
CRTC1   550000 perm   207 sec   (2651 perm/sec)   p_kst 1.058182e-03   p_cons 2.832545e-02   p_joint 4.381818e-04

Joint ci ratio: 2.488649e-01	ci left: 3.877860e-04	ci right 4.996309e-04	k: 247	n:560000
Cons ci ratio: 3.067785e-02	ci left: 2.789558e-02	ci right 2.876645e-02	k: 15864	n:560000
KS ci ratio: 1.604838e-01	ci left: 9.788712e-04	ci right 1.151357e-03	k: 595	n:560000
CRTC1   560000 perm   213 sec   (2627 perm/sec)   p_kst 1.062500e-03   p_cons 2.832857e-02   p_joint 4.410714e-04

Joint ci ratio: 2.468820e-01	ci left: 3.875644e-04	ci right 4.983180e-04	k: 251	n:570000
Cons ci ratio: 3.039623e-02	ci left: 2.791978e-02	ci right 2.878326e-02	k: 16159	n:570000
KS ci ratio: 1.590230e-01	ci left: 9.802248e-04	ci right 1.151227e-03	k: 606	n:570000
CRTC1   570000 perm   219 sec   (2600 perm/sec)   p_kst 1.063158e-03   p_cons 2.834912e-02   p_joint 4.403509e-04

Joint ci ratio: 2.430534e-01	ci left: 3.938289e-04	ci right 5.043642e-04	k: 259	n:580000
Cons ci ratio: 3.011846e-02	ci left: 2.795003e-02	ci right 2.880641e-02	k: 16458	n:580000
KS ci ratio: 1.574739e-01	ci left: 9.831949e-04	ci right 1.152887e-03	k: 618	n:580000
CRTC1   580000 perm   225 sec   (2575 perm/sec)   p_kst 1.065517e-03   p_cons 2.837586e-02   p_joint 4.465517e-04

Joint ci ratio: 2.412051e-01	ci left: 3.935222e-04	ci right 5.030059e-04	k: 263	n:590000
Cons ci ratio: 2.983351e-02	ci left: 2.800621e-02	ci right 2.885605e-02	k: 16773	n:590000
KS ci ratio: 1.563416e-01	ci left: 9.811858e-04	ci right 1.149199e-03	k: 627	n:590000
CRTC1   590000 perm   231 sec   (2552 perm/sec)   p_kst 1.062712e-03   p_cons 2.842881e-02   p_joint 4.457627e-04

Joint ci ratio: 2.402971e-01	ci left: 3.900957e-04	ci right 4.981566e-04	k: 265	n:600000
Cons ci ratio: 2.958859e-02	ci left: 2.800099e-02	ci right 2.884358e-02	k: 17052	n:600000
KS ci ratio: 1.553556e-01	ci left: 9.776459e-04	ci right 1.143899e-03	k: 635	n:600000
CRTC1   600000 perm   237 sec   (2527 perm/sec)   p_kst 1.058333e-03   p_cons 2.842000e-02   p_joint 4.416667e-04

Joint ci ratio: 2.389537e-01	ci left: 3.883234e-04	ci right 4.952029e-04	k: 268	n:610000
Cons ci ratio: 2.934089e-02	ci left: 2.801224e-02	ci right 2.884799e-02	k: 17341	n:610000
KS ci ratio: 1.537915e-01	ci left: 9.821062e-04	ci right 1.147281e-03	k: 648	n:610000
CRTC1   610000 perm   244 sec   (2505 perm/sec)   p_kst 1.062295e-03   p_cons 2.842787e-02   p_joint 4.393443e-04

Joint ci ratio: 2.371968e-01	ci left: 3.881269e-04	ci right 4.940515e-04	k: 272	n:620000
Cons ci ratio: 2.907980e-02	ci left: 2.805999e-02	ci right 2.888959e-02	k: 17653	n:620000
KS ci ratio: 1.519294e-01	ci left: 9.910856e-04	ci right 1.155569e-03	k: 664	n:620000
CRTC1   620000 perm   250 sec   (2481 perm/sec)   p_kst 1.070968e-03   p_cons 2.847258e-02   p_joint 4.387097e-04

Joint ci ratio: 2.350539e-01	ci left: 3.894332e-04	ci right 4.946146e-04	k: 277	n:630000
Cons ci ratio: 2.885035e-02	ci left: 2.805897e-02	ci right 2.888189e-02	k: 17935	n:630000
KS ci ratio: 1.510240e-01	ci left: 9.875710e-04	ci right 1.150406e-03	k: 672	n:630000
CRTC1   630000 perm   256 sec   (2459 perm/sec)   p_kst 1.066667e-03   p_cons 2.846825e-02   p_joint 4.396825e-04

Joint ci ratio: 2.337961e-01	ci left: 3.877605e-04	ci right 4.918486e-04	k: 280	n:640000
Cons ci ratio: 2.861655e-02	ci left: 2.807662e-02	ci right 2.889328e-02	k: 18229	n:640000
KS ci ratio: 1.503559e-01	ci left: 9.811615e-04	ci right 1.142160e-03	k: 678	n:640000
CRTC1   640000 perm   263 sec   (2436 perm/sec)   p_kst 1.059375e-03   p_cons 2.848281e-02   p_joint 4.375000e-04

Joint ci ratio: 2.321497e-01	ci left: 3.875896e-04	ci right 4.907941e-04	k: 284	n:650000
Cons ci ratio: 2.839387e-02	ci left: 2.808307e-02	ci right 2.889345e-02	k: 18516	n:650000
KS ci ratio: 1.496964e-01	ci left: 9.749507e-04	ci right 1.134165e-03	k: 684	n:650000
CRTC1   650000 perm   269 sec   (2415 perm/sec)   p_kst 1.052308e-03   p_cons 2.848615e-02   p_joint 4.369231e-04

Joint ci ratio: 2.301396e-01	ci left: 3.888541e-04	ci right 4.913714e-04	k: 289	n:660000
Cons ci ratio: 2.817631e-02	ci left: 2.808934e-02	ci right 2.889359e-02	k: 18803	n:660000
KS ci ratio: 1.479776e-01	ci left: 9.835187e-04	ci right 1.142125e-03	k: 700	n:660000
CRTC1   660000 perm   276 sec   (2393 perm/sec)   p_kst 1.060606e-03   p_cons 2.848939e-02   p_joint 4.378788e-04

Joint ci ratio: 2.289586e-01	ci left: 3.872705e-04	ci right 4.887722e-04	k: 292	n:670000
Cons ci ratio: 2.795463e-02	ci left: 2.811324e-02	ci right 2.891174e-02	k: 19102	n:670000
KS ci ratio: 1.469334e-01	ci left: 9.832140e-04	ci right 1.140554e-03	k: 710	n:670000
CRTC1   670000 perm   283 sec   (2371 perm/sec)   p_kst 1.059701e-03   p_cons 2.851045e-02   p_joint 4.358209e-04

Joint ci ratio: 2.285694e-01	ci left: 3.829615e-04	ci right 4.831393e-04	k: 293	n:680000
Cons ci ratio: 2.775799e-02	ci left: 2.809702e-02	ci right 2.888936e-02	k: 19374	n:680000
KS ci ratio: 1.457087e-01	ci left: 9.857560e-04	ci right 1.142074e-03	k: 722	n:680000
CRTC1   680000 perm   289 sec   (2351 perm/sec)   p_kst 1.061765e-03   p_cons 2.849118e-02   p_joint 4.308824e-04

Joint ci ratio: 2.270303e-01	ci left: 3.828777e-04	ci right 4.822646e-04	k: 297	n:690000
Cons ci ratio: 2.756111e-02	ci left: 2.808993e-02	ci right 2.887636e-02	k: 19652	n:690000
KS ci ratio: 1.447115e-01	ci left: 9.854359e-04	ci right 1.140541e-03	k: 732	n:690000
CRTC1   690000 perm   296 sec   (2330 perm/sec)   p_kst 1.060870e-03   p_cons 2.848116e-02   p_joint 4.304348e-04

Joint ci ratio: 2.493794e-01	ci left: 3.088878e-04	ci right 3.981895e-04	k: 246	n:700000
Cons ci ratio: 2.736906e-02	ci left: 2.808164e-02	ci right 2.886227e-02	k: 19929	n:700000
KS ci ratio: 1.433486e-01	ci left: 9.906377e-04	ci right 1.144968e-03	k: 746	n:700000
CRTC1   700000 perm   303 sec   (2311 perm/sec)   p_kst 1.065714e-03   p_cons 2.847000e-02   p_joint 3.514286e-04

Joint ci ratio: 2.468928e-01	ci left: 3.111417e-04	ci right 4.000604e-04	k: 251	n:710000
Cons ci ratio: 2.718513e-02	ci left: 2.806520e-02	ci right 2.884006e-02	k: 20200	n:710000
KS ci ratio: 1.422108e-01	ci left: 9.929828e-04	ci right 1.146346e-03	k: 758	n:710000
CRTC1   710000 perm   310 sec   (2292 perm/sec)   p_kst 1.067606e-03   p_cons 2.845070e-02   p_joint 3.535211e-04

Joint ci ratio: 2.454363e-01	ci left: 3.107299e-04	ci right 3.989272e-04	k: 254	n:720000
Cons ci ratio: 2.700350e-02	ci left: 2.805200e-02	ci right 2.882124e-02	k: 20473	n:720000
KS ci ratio: 1.412832e-01	ci left: 9.925877e-04	ci right 1.144806e-03	k: 768	n:720000
CRTC1   720000 perm   317 sec   (2274 perm/sec)   p_kst 1.066667e-03   p_cons 2.843472e-02   p_joint 3.527778e-04

Joint ci ratio: 2.440052e-01	ci left: 3.103309e-04	ci right 3.978236e-04	k: 257	n:730000
Cons ci ratio: 2.682946e-02	ci left: 2.803102e-02	ci right 2.879465e-02	k: 20740	n:730000
KS ci ratio: 1.403735e-01	ci left: 9.922066e-04	ci right 1.143304e-03	k: 778	n:730000
CRTC1   730000 perm   324 sec   (2254 perm/sec)   p_kst 1.065753e-03   p_cons 2.841096e-02   p_joint 3.520548e-04

Joint ci ratio: 2.412161e-01	ci left: 3.137526e-04	ci right 4.010476e-04	k: 263	n:740000
Cons ci ratio: 2.665352e-02	ci left: 2.802136e-02	ci right 2.877964e-02	k: 21015	n:740000
KS ci ratio: 1.397474e-01	ci left: 9.879262e-04	ci right 1.137645e-03	k: 785	n:740000
CRTC1   740000 perm   331 sec   (2237 perm/sec)   p_kst 1.060811e-03   p_cons 2.839865e-02   p_joint 3.554054e-04

Joint ci ratio: 2.376417e-01	ci left: 3.195961e-04	ci right 4.070054e-04	k: 271	n:750000
Cons ci ratio: 2.647395e-02	ci left: 2.802654e-02	ci right 2.877978e-02	k: 21301	n:750000
KS ci ratio: 1.384323e-01	ci left: 9.940581e-04	ci right 1.143172e-03	k: 800	n:750000
CRTC1   750000 perm   338 sec   (2219 perm/sec)   p_kst 1.066667e-03   p_cons 2.840133e-02   p_joint 3.613333e-04

Joint ci ratio: 2.354869e-01	ci left: 3.215800e-04	ci right 4.086182e-04	k: 276	n:760000
Cons ci ratio: 2.629546e-02	ci left: 2.803683e-02	ci right 2.878519e-02	k: 21591	n:760000
KS ci ratio: 1.373222e-01	ci left: 9.974937e-04	ci right 1.145825e-03	k: 813	n:760000
CRTC1   760000 perm   345 sec   (2200 perm/sec)   p_kst 1.069737e-03   p_cons 2.840921e-02   p_joint 3.631579e-04

Joint ci ratio: 2.354875e-01	ci left: 3.174036e-04	ci right 4.033116e-04	k: 276	n:770000
Cons ci ratio: 2.611500e-02	ci left: 2.805849e-02	ci right 2.880221e-02	k: 21890	n:770000
KS ci ratio: 1.366526e-01	ci left: 9.945727e-04	ci right 1.141690e-03	k: 821	n:770000
CRTC1   770000 perm   353 sec   (2182 perm/sec)   p_kst 1.066234e-03   p_cons 2.842857e-02   p_joint 3.584416e-04

Joint ci ratio: 2.385222e-01	ci left: 3.048925e-04	ci right 3.886350e-04	k: 269	n:780000
Cons ci ratio: 2.593761e-02	ci left: 2.808088e-02	ci right 2.882006e-02	k: 22190	n:780000
KS ci ratio: 1.359107e-01	ci left: 9.929668e-04	ci right 1.138984e-03	k: 830	n:780000
CRTC1   780000 perm   360 sec   (2167 perm/sec)   p_kst 1.064103e-03   p_cons 2.844872e-02   p_joint 3.448718e-04

Joint ci ratio: 2.372080e-01	ci left: 3.046043e-04	ci right 3.877389e-04	k: 272	n:790000
Cons ci ratio: 2.579331e-02	ci left: 2.803983e-02	ci right 2.877376e-02	k: 22440	n:790000
KS ci ratio: 1.347001e-01	ci left: 9.987424e-04	ci right 1.144196e-03	k: 845	n:790000
CRTC1   790000 perm   367 sec   (2151 perm/sec)   p_kst 1.069620e-03   p_cons 2.840506e-02   p_joint 3.443038e-04

Joint ci ratio: 2.359154e-01	ci left: 3.043245e-04	ci right 3.868641e-04	k: 275	n:800000
Cons ci ratio: 2.564092e-02	ci left: 2.802217e-02	ci right 2.875125e-02	k: 22708	n:800000
KS ci ratio: 1.333663e-01	ci left: 1.006796e-03	ci right 1.151856e-03	k: 862	n:800000
CRTC1   800000 perm   375 sec   (2132 perm/sec)   p_kst 1.077500e-03   p_cons 2.838500e-02   p_joint 3.437500e-04

Joint ci ratio: 2.346437e-01	ci left: 3.040528e-04	ci right 3.860096e-04	k: 278	n:810000
Cons ci ratio: 2.547523e-02	ci left: 2.803932e-02	ci right 2.876406e-02	k: 23004	n:810000
KS ci ratio: 1.325243e-01	ci left: 1.007495e-03	ci right 1.151667e-03	k: 873	n:810000
CRTC1   810000 perm   383 sec   (2116 perm/sec)   p_kst 1.077778e-03   p_cons 2.840000e-02   p_joint 3.432099e-04

Joint ci ratio: 2.416786e-01	ci left: 2.819962e-04	ci right 3.606286e-04	k: 262	n:820000
Cons ci ratio: 2.533062e-02	ci left: 2.801728e-02	ci right 2.873728e-02	k: 23268	n:820000
KS ci ratio: 1.316982e-01	ci left: 1.008180e-03	ci right 1.151480e-03	k: 884	n:820000
CRTC1   820000 perm   390 sec   (2100 perm/sec)   p_kst 1.078049e-03   p_cons 2.837561e-02   p_joint 3.195122e-04

Joint ci ratio: 2.416791e-01	ci left: 2.785986e-04	ci right 3.562838e-04	k: 262	n:830000
Cons ci ratio: 2.517194e-02	ci left: 2.803170e-02	ci right 2.874750e-02	k: 23562	n:830000
KS ci ratio: 1.308142e-01	ci left: 1.010016e-03	ci right 1.152539e-03	k: 896	n:830000
CRTC1   830000 perm   398 sec   (2084 perm/sec)   p_kst 1.079518e-03   p_cons 2.838795e-02   p_joint 3.156627e-04

Joint ci ratio: 2.398618e-01	ci left: 2.797566e-04	ci right 3.570909e-04	k: 266	n:840000
Cons ci ratio: 2.502646e-02	ci left: 2.802332e-02	ci right 2.873470e-02	k: 23837	n:840000
KS ci ratio: 1.295205e-01	ci left: 1.018723e-03	ci right 1.160944e-03	k: 914	n:840000
CRTC1   840000 perm   406 sec   (2069 perm/sec)   p_kst 1.088095e-03   p_cons 2.837738e-02   p_joint 3.166667e-04

Joint ci ratio: 2.385256e-01	ci left: 2.797833e-04	ci right 3.566304e-04	k: 269	n:850000
Cons ci ratio: 2.488560e-02	ci left: 2.801046e-02	ci right 2.871746e-02	k: 24108	n:850000
KS ci ratio: 1.288883e-01	ci left: 1.016984e-03	ci right 1.158216e-03	k: 923	n:850000
CRTC1   850000 perm   414 sec   (2055 perm/sec)   p_kst 1.085882e-03   p_cons 2.836235e-02   p_joint 3.164706e-04

Joint ci ratio: 2.285798e-01	ci left: 3.028053e-04	ci right 3.820192e-04	k: 293	n:860000
Cons ci ratio: 2.310557e-02	ci left: 3.201059e-02	ci right 3.276000e-02	k: 27850	n:860000
KS ci ratio: 1.281966e-01	ci left: 1.016413e-03	ci right 1.156750e-03	k: 933	n:860000
CRTC1   860000 perm   421 sec   (2041 perm/sec)   p_kst 1.084884e-03   p_cons 3.238372e-02   p_joint 3.406977e-04

Joint ci ratio: 2.321626e-01	ci left: 2.895767e-04	ci right 3.666877e-04	k: 284	n:870000
Cons ci ratio: 2.296644e-02	ci left: 3.202893e-02	ci right 3.277419e-02	k: 28188	n:870000
KS ci ratio: 1.275158e-01	ci left: 1.015856e-03	ci right 1.155316e-03	k: 943	n:870000
CRTC1   870000 perm   429 sec   (2026 perm/sec)   p_kst 1.083908e-03   p_cons 3.240000e-02   p_joint 3.264368e-04

Joint ci ratio: 2.305502e-01	ci left: 2.905681e-04	ci right 3.673292e-04	k: 288	n:880000
Cons ci ratio: 2.281822e-02	ci left: 3.207850e-02	ci right 3.282004e-02	k: 28554	n:880000
KS ci ratio: 1.264484e-01	ci left: 1.021917e-03	ci right 1.160946e-03	k: 959	n:880000
CRTC1   880000 perm   437 sec   (2012 perm/sec)   p_kst 1.089773e-03   p_cons 3.244773e-02   p_joint 3.272727e-04

Joint ci ratio: 2.281933e-01	ci left: 2.936575e-04	ci right 3.703301e-04	k: 294	n:890000
Cons ci ratio: 2.267688e-02	ci left: 3.211580e-02	ci right 3.285354e-02	k: 28910	n:890000
KS ci ratio: 1.255361e-01	ci left: 1.025670e-03	ci right 1.164127e-03	k: 973	n:890000
CRTC1   890000 perm   445 sec   (1998 perm/sec)   p_kst 1.093258e-03   p_cons 3.248315e-02   p_joint 3.303371e-04

Joint ci ratio: 2.262835e-01	ci left: 2.956340e-04	ci right 3.720866e-04	k: 299	n:900000
Cons ci ratio: 2.256085e-02	ci left: 3.208929e-02	ci right 3.282261e-02	k: 29209	n:900000
KS ci ratio: 1.248966e-01	ci left: 1.025036e-03	ci right 1.162652e-03	k: 983	n:900000
CRTC1   900000 perm   454 sec   (1984 perm/sec)   p_kst 1.092222e-03   p_cons 3.245444e-02   p_joint 3.322222e-04

Joint ci ratio: 2.236884e-01	ci left: 2.996442e-04	ci right 3.761227e-04	k: 306	n:910000
Cons ci ratio: 2.244030e-02	ci left: 3.208087e-02	ci right 3.281002e-02	k: 29524	n:910000
KS ci ratio: 1.239551e-01	ci left: 1.029743e-03	ci right 1.166871e-03	k: 998	n:910000
CRTC1   910000 perm   462 sec   (1970 perm/sec)   p_kst 1.096703e-03   p_cons 3.244396e-02   p_joint 3.362637e-04

Joint ci ratio: 2.222451e-01	ci left: 3.004922e-04	ci right 3.766246e-04	k: 310	n:920000
Cons ci ratio: 2.231973e-02	ci left: 3.207804e-02	ci right 3.280317e-02	k: 29844	n:920000
KS ci ratio: 1.230346e-01	ci left: 1.034351e-03	ci right 1.170995e-03	k: 1013	n:920000
CRTC1   920000 perm   470 sec   (1957 perm/sec)   p_kst 1.101087e-03   p_cons 3.243913e-02   p_joint 3.369565e-04

Joint ci ratio: 2.211809e-01	ci left: 3.003078e-04	ci right 3.759796e-04	k: 313	n:930000
Cons ci ratio: 2.219234e-02	ci left: 3.209989e-02	ci right 3.282131e-02	k: 30187	n:930000
KS ci ratio: 1.222533e-01	ci left: 1.036778e-03	ci right 1.172811e-03	k: 1026	n:930000
CRTC1   930000 perm   479 sec   (1942 perm/sec)   p_kst 1.103226e-03   p_cons 3.245914e-02   p_joint 3.365591e-04

Joint ci ratio: 2.215345e-01	ci left: 2.961081e-04	ci right 3.708572e-04	k: 312	n:940000
Cons ci ratio: 2.207196e-02	ci left: 3.210752e-02	ci right 3.282515e-02	k: 30517	n:940000
KS ci ratio: 1.215452e-01	ci left: 1.038126e-03	ci right 1.173489e-03	k: 1038	n:940000
CRTC1   940000 perm   488 sec   (1928 perm/sec)   p_kst 1.104255e-03   p_cons 3.246489e-02   p_joint 3.319149e-04

Joint ci ratio: 2.226046e-01	ci left: 2.900088e-04	ci right 3.636203e-04	k: 309	n:950000
Cons ci ratio: 2.195904e-02	ci left: 3.209930e-02	ci right 3.281303e-02	k: 30832	n:950000
KS ci ratio: 1.210223e-01	ci left: 1.036384e-03	ci right 1.170898e-03	k: 1047	n:950000
CRTC1   950000 perm   496 sec   (1914 perm/sec)   p_kst 1.102105e-03   p_cons 3.245474e-02   p_joint 3.252632e-04

Joint ci ratio: 2.262858e-01	ci left: 2.771566e-04	ci right 3.488316e-04	k: 299	n:960000
Cons ci ratio: 2.185110e-02	ci left: 3.208193e-02	ci right 3.279173e-02	k: 31138	n:960000
KS ci ratio: 1.203353e-01	ci left: 1.037711e-03	ci right 1.171578e-03	k: 1059	n:960000
CRTC1   960000 perm   505 sec   (1901 perm/sec)   p_kst 1.103125e-03   p_cons 3.243542e-02   p_joint 3.114583e-04

Joint ci ratio: 2.289741e-01	ci left: 2.674941e-04	ci right 3.376083e-04	k: 292	n:970000
Cons ci ratio: 2.173224e-02	ci left: 3.210083e-02	ci right 3.280712e-02	k: 31479	n:970000
KS ci ratio: 1.200529e-01	ci left: 1.032013e-03	ci right 1.164810e-03	k: 1064	n:970000
CRTC1   970000 perm   514 sec   (1889 perm/sec)   p_kst 1.096907e-03   p_cons 3.245258e-02   p_joint 3.010309e-04

Joint ci ratio: 2.285846e-01	ci left: 2.657265e-04	ci right 3.352422e-04	k: 293	n:980000
Cons ci ratio: 2.161705e-02	ci left: 3.211427e-02	ci right 3.281707e-02	k: 31815	n:980000
KS ci ratio: 1.193821e-01	ci left: 1.033360e-03	ci right 1.165535e-03	k: 1076	n:980000
CRTC1   980000 perm   522 sec   (1876 perm/sec)   p_kst 1.097959e-03   p_cons 3.246429e-02   p_joint 2.989796e-04

Joint ci ratio: 2.289748e-01	ci left: 2.620901e-04	ci right 3.307881e-04	k: 292	n:990000
Cons ci ratio: 2.150229e-02	ci left: 3.213147e-02	ci right 3.283087e-02	k: 32155	n:990000
KS ci ratio: 1.188318e-01	ci left: 1.032722e-03	ci right 1.164164e-03	k: 1086	n:990000
CRTC1   990000 perm   531 sec   (1864 perm/sec)   p_kst 1.096970e-03   p_cons 3.247980e-02   p_joint 2.949495e-04

Joint ci ratio: 2.278115e-01	ci left: 2.622976e-04	ci right 3.306515e-04	k: 295	n:1000000
Cons ci ratio: 2.139784e-02	ci left: 3.212346e-02	ci right 3.281925e-02	k: 32470	n:1000000
KS ci ratio: 1.182890e-01	ci left: 1.032098e-03	ci right 1.162819e-03	k: 1096	n:1000000
CRTC1   1000000 perm   540 sec   (1852 perm/sec)   p_kst 1.096000e-03   p_cons 3.247000e-02   p_joint 2.950000e-04

Joint ci ratio: 2.255368e-01	ci left: 2.653039e-04	ci right 3.336550e-04	k: 301	n:1010000
Cons ci ratio: 2.129122e-02	ci left: 3.212646e-02	ci right 3.281880e-02	k: 32796	n:1010000
KS ci ratio: 1.175941e-01	ci left: 1.034371e-03	ci right 1.164557e-03	k: 1109	n:1010000
CRTC1   1010000 perm   549 sec   (1840 perm/sec)   p_kst 1.098020e-03   p_cons 3.247129e-02   p_joint 2.980198e-04

Joint ci ratio: 2.251646e-01	ci left: 2.636279e-04	ci right 3.314196e-04	k: 302	n:1020000
Cons ci ratio: 2.118055e-02	ci left: 3.214598e-02	ci right 3.283511e-02	k: 33139	n:1020000
KS ci ratio: 1.170680e-01	ci left: 1.033747e-03	ci right 1.163231e-03	k: 1119	n:1020000
CRTC1   1020000 perm   558 sec   (1829 perm/sec)   p_kst 1.097059e-03   p_cons 3.248922e-02   p_joint 2.960784e-04

Joint ci ratio: 2.244252e-01	ci left: 2.629009e-04	ci right 3.302528e-04	k: 304	n:1030000
Cons ci ratio: 2.108234e-02	ci left: 3.213327e-02	ci right 3.281888e-02	k: 33449	n:1030000
KS ci ratio: 1.164973e-01	ci left: 1.034078e-03	ci right 1.162929e-03	k: 1130	n:1030000
CRTC1   1030000 perm   567 sec   (1817 perm/sec)   p_kst 1.097087e-03   p_cons 3.247476e-02   p_joint 2.951456e-04

Joint ci ratio: 2.229678e-01	ci left: 2.640036e-04	ci right 3.311386e-04	k: 308	n:1040000
Cons ci ratio: 2.098933e-02	ci left: 3.210932e-02	ci right 3.279136e-02	k: 33747	n:1040000
KS ci ratio: 1.160367e-01	ci left: 1.032537e-03	ci right 1.160652e-03	k: 1139	n:1040000
CRTC1   1040000 perm   576 sec   (1805 perm/sec)   p_kst 1.095192e-03   p_cons 3.244904e-02   p_joint 2.961538e-04

Joint ci ratio: 2.211852e-01	ci left: 2.659864e-04	ci right 3.330112e-04	k: 313	n:1050000
Cons ci ratio: 2.089881e-02	ci left: 3.208205e-02	ci right 3.276054e-02	k: 34041	n:1050000
KS ci ratio: 1.156823e-01	ci left: 1.029177e-03	ci right 1.156458e-03	k: 1146	n:1050000
CRTC1   1050000 perm   585 sec   (1794 perm/sec)   p_kst 1.091429e-03   p_cons 3.242000e-02   p_joint 2.980952e-04

Joint ci ratio: 2.204843e-01	ci left: 2.652595e-04	ci right 3.318606e-04	k: 315	n:1060000
Cons ci ratio: 2.080319e-02	ci left: 3.207407e-02	ci right 3.274925e-02	k: 34355	n:1060000
KS ci ratio: 1.150818e-01	ci left: 1.030461e-03	ci right 1.157196e-03	k: 1158	n:1060000
CRTC1   1060000 perm   595 sec   (1782 perm/sec)   p_kst 1.092453e-03   p_cons 3.241038e-02   p_joint 2.971698e-04

Joint ci ratio: 2.204846e-01	ci left: 2.627804e-04	ci right 3.287592e-04	k: 315	n:1070000
Cons ci ratio: 2.069685e-02	ci left: 3.210251e-02	ci right 3.277479e-02	k: 34708	n:1070000
KS ci ratio: 1.144906e-01	ci left: 1.031724e-03	ci right 1.157918e-03	k: 1170	n:1070000
CRTC1   1070000 perm   604 sec   (1771 perm/sec)   p_kst 1.093458e-03   p_cons 3.243738e-02   p_joint 2.943925e-04

Joint ci ratio: 2.174097e-01	ci left: 2.682237e-04	ci right 3.345046e-04	k: 324	n:1080000
Cons ci ratio: 2.060305e-02	ci left: 3.209726e-02	ci right 3.276636e-02	k: 35025	n:1080000
KS ci ratio: 1.137640e-01	ci left: 1.035663e-03	ci right 1.161481e-03	k: 1185	n:1080000
CRTC1   1080000 perm   614 sec   (1760 perm/sec)   p_kst 1.097222e-03   p_cons 3.243056e-02   p_joint 3.000000e-04

Joint ci ratio: 2.160839e-01	ci left: 2.692335e-04	ci right 3.353043e-04	k: 328	n:1090000
Cons ci ratio: 2.050961e-02	ci left: 3.209486e-02	ci right 3.276084e-02	k: 35345	n:1090000
KS ci ratio: 1.130983e-01	ci left: 1.038642e-03	ci right 1.164034e-03	k: 1199	n:1090000
CRTC1   1090000 perm   623 sec   (1749 perm/sec)   p_kst 1.100000e-03   p_cons 3.242661e-02   p_joint 3.009174e-04

Joint ci ratio: 2.157564e-01	ci left: 2.676458e-04	ci right 3.332143e-04	k: 329	n:1100000
Cons ci ratio: 2.040237e-02	ci left: 3.213865e-02	ci right 3.280200e-02	k: 35716	n:1100000
KS ci ratio: 1.128169e-01	ci left: 1.034500e-03	ci right 1.159060e-03	k: 1205	n:1100000
CRTC1   1100000 perm   633 sec   (1738 perm/sec)   p_kst 1.095455e-03   p_cons 3.246909e-02   p_joint 2.990909e-04

Joint ci ratio: 2.151057e-01	ci left: 2.669392e-04	ci right 3.321113e-04	k: 331	n:1110000
Cons ci ratio: 2.030843e-02	ci left: 3.214579e-02	ci right 3.280620e-02	k: 36047	n:1110000
KS ci ratio: 1.124911e-01	ci left: 1.031309e-03	ci right 1.155102e-03	k: 1212	n:1110000
CRTC1   1110000 perm   642 sec   (1728 perm/sec)   p_kst 1.091892e-03   p_cons 3.247477e-02   p_joint 2.981982e-04

Joint ci ratio: 2.135038e-01	ci left: 2.687805e-04	ci right 3.338495e-04	k: 336	n:1120000
Cons ci ratio: 2.021778e-02	ci left: 3.214659e-02	ci right 3.280404e-02	k: 36371	n:1120000
KS ci ratio: 1.121221e-01	ci left: 1.029043e-03	ci right 1.152132e-03	k: 1220	n:1120000
CRTC1   1120000 perm   652 sec   (1717 perm/sec)   p_kst 1.089286e-03   p_cons 3.247411e-02   p_joint 3.000000e-04

Joint ci ratio: 2.128731e-01	ci left: 2.680773e-04	ci right 3.327593e-04	k: 338	n:1130000
Cons ci ratio: 2.012493e-02	ci left: 3.215796e-02	ci right 3.281258e-02	k: 36707	n:1130000
KS ci ratio: 1.117567e-01	ci left: 1.026817e-03	ci right 1.149214e-03	k: 1228	n:1130000
CRTC1   1130000 perm   662 sec   (1706 perm/sec)   p_kst 1.086726e-03   p_cons 3.248407e-02   p_joint 2.991150e-04

Joint ci ratio: 2.180836e-01	ci left: 2.524477e-04	ci right 3.150495e-04	k: 322	n:1140000
Cons ci ratio: 2.003419e-02	ci left: 3.216651e-02	ci right 3.281832e-02	k: 37040	n:1140000
KS ci ratio: 1.111702e-01	ci left: 1.028896e-03	ci right 1.150855e-03	k: 1241	n:1140000
CRTC1   1140000 perm   673 sec   (1694 perm/sec)   p_kst 1.088596e-03   p_cons 3.249123e-02   p_joint 2.824561e-04

Joint ci ratio: 2.236963e-01	ci left: 2.371089e-04	ci right 2.976288e-04	k: 306	n:1150000
Cons ci ratio: 1.994936e-02	ci left: 3.216021e-02	ci right 3.280910e-02	k: 37356	n:1150000
KS ci ratio: 1.109029e-01	ci left: 1.025021e-03	ci right 1.146210e-03	k: 1247	n:1150000
CRTC1   1150000 perm   683 sec   (1684 perm/sec)   p_kst 1.084348e-03   p_cons 3.248348e-02   p_joint 2.660870e-04

Joint ci ratio: 2.226112e-01	ci left: 2.375065e-04	ci right 2.977935e-04	k: 309	n:1160000
Cons ci ratio: 1.985742e-02	ci left: 3.217976e-02	ci right 3.282602e-02	k: 37702	n:1160000
KS ci ratio: 1.101549e-01	ci left: 1.030435e-03	ci right 1.151389e-03	k: 1264	n:1160000
CRTC1   1160000 perm   692 sec   (1675 perm/sec)   p_kst 1.089655e-03   p_cons 3.250172e-02   p_joint 2.663793e-04

Joint ci ratio: 2.211886e-01	ci left: 2.387053e-04	ci right 2.988568e-04	k: 313	n:1170000
Cons ci ratio: 1.976621e-02	ci left: 3.220069e-02	ci right 3.284436e-02	k: 38050	n:1170000
KS ci ratio: 1.097221e-01	ci left: 1.029940e-03	ci right 1.150330e-03	k: 1274	n:1170000
CRTC1   1170000 perm   703 sec   (1664 perm/sec)   p_kst 1.088889e-03   p_cons 3.252137e-02   p_joint 2.675214e-04

Joint ci ratio: 2.317663e-01	ci left: 2.142987e-04	ci right 2.712525e-04	k: 285	n:1180000
Cons ci ratio: 1.967730e-02	ci left: 3.221789e-02	ci right 3.285898e-02	k: 38394	n:1180000
KS ci ratio: 1.092518e-01	ci left: 1.030278e-03	ci right 1.150158e-03	k: 1285	n:1180000
CRTC1   1180000 perm   714 sec   (1654 perm/sec)   p_kst 1.088983e-03   p_cons 3.253729e-02   p_joint 2.415254e-04

Joint ci ratio: 2.313623e-01	ci left: 2.132894e-04	ci right 2.698621e-04	k: 286	n:1190000
Cons ci ratio: 1.958880e-02	ci left: 3.223732e-02	ci right 3.287588e-02	k: 38741	n:1190000
KS ci ratio: 1.087875e-01	ci left: 1.030612e-03	ci right 1.149989e-03	k: 1296	n:1190000
CRTC1   1190000 perm   724 sec   (1644 perm/sec)   p_kst 1.089076e-03   p_cons 3.255546e-02   p_joint 2.403361e-04

Joint ci ratio: 2.309604e-01	ci left: 2.122971e-04	ci right 2.684948e-04	k: 287	n:1200000
Cons ci ratio: 1.950818e-02	ci left: 3.223487e-02	ci right 3.287072e-02	k: 39062	n:1200000
KS ci ratio: 1.082463e-01	ci left: 1.032563e-03	ci right 1.151533e-03	k: 1309	n:1200000
CRTC1   1200000 perm   734 sec   (1634 perm/sec)   p_kst 1.090833e-03   p_cons 3.255167e-02   p_joint 2.391667e-04

Joint ci ratio: 2.305606e-01	ci left: 2.113212e-04	ci right 2.671500e-04	k: 288	n:1210000
Cons ci ratio: 1.942779e-02	ci left: 3.223493e-02	ci right 3.286814e-02	k: 39386	n:1210000
KS ci ratio: 1.078355e-01	ci left: 1.032071e-03	ci right 1.150504e-03	k: 1319	n:1210000
CRTC1   1210000 perm   745 sec   (1625 perm/sec)   p_kst 1.090083e-03   p_cons 3.255041e-02   p_joint 2.380165e-04

Joint ci ratio: 2.305608e-01	ci left: 2.095890e-04	ci right 2.649603e-04	k: 288	n:1220000
Cons ci ratio: 1.935015e-02	ci left: 3.222928e-02	ci right 3.285982e-02	k: 39703	n:1220000
KS ci ratio: 1.075509e-01	ci left: 1.029194e-03	ci right 1.146965e-03	k: 1326	n:1220000
CRTC1   1220000 perm   755 sec   (1615 perm/sec)   p_kst 1.086885e-03   p_cons 3.254344e-02   p_joint 2.360656e-04

Joint ci ratio: 2.289815e-01	ci left: 2.109499e-04	ci right 2.662450e-04	k: 292	n:1230000
Cons ci ratio: 1.926050e-02	ci left: 3.226582e-02	ci right 3.289411e-02	k: 40072	n:1230000
KS ci ratio: 1.069879e-01	ci left: 1.031904e-03	ci right 1.149328e-03	k: 1340	n:1230000
CRTC1   1230000 perm   766 sec   (1606 perm/sec)   p_kst 1.089431e-03   p_cons 3.257886e-02   p_joint 2.373984e-04

Joint ci ratio: 2.278181e-01	ci left: 2.115297e-04	ci right 2.666554e-04	k: 295	n:1240000
Cons ci ratio: 1.918435e-02	ci left: 3.226163e-02	ci right 3.288733e-02	k: 40391	n:1240000
KS ci ratio: 1.067099e-01	ci left: 1.029076e-03	ci right 1.145855e-03	k: 1347	n:1240000
CRTC1   1240000 perm   777 sec   (1597 perm/sec)   p_kst 1.086290e-03   p_cons 3.257339e-02   p_joint 2.379032e-04

Joint ci ratio: 2.266722e-01	ci left: 2.121008e-04	ci right 2.670585e-04	k: 298	n:1250000
Cons ci ratio: 1.911031e-02	ci left: 3.225353e-02	ci right 3.287664e-02	k: 40705	n:1250000
KS ci ratio: 1.063555e-01	ci left: 1.027851e-03	ci right 1.144080e-03	k: 1356	n:1250000
CRTC1   1250000 perm   787 sec   (1588 perm/sec)   p_kst 1.084800e-03   p_cons 3.256400e-02   p_joint 2.384000e-04

Joint ci ratio: 2.317681e-01	ci left: 2.006922e-04	ci right 2.540304e-04	k: 285	n:1260000
Cons ci ratio: 1.904095e-02	ci left: 3.223293e-02	ci right 3.285335e-02	k: 41003	n:1260000
KS ci ratio: 1.060435e-01	ci left: 1.025874e-03	ci right 1.141518e-03	k: 1364	n:1260000
CRTC1   1260000 perm   798 sec   (1579 perm/sec)   p_kst 1.082540e-03   p_cons 3.254206e-02   p_joint 2.261905e-04

Joint ci ratio: 2.297681e-01	ci left: 2.028214e-04	ci right 2.561943e-04	k: 290	n:1270000
Cons ci ratio: 1.895788e-02	ci left: 3.226046e-02	ci right 3.287868e-02	k: 41362	n:1270000
KS ci ratio: 1.053128e-01	ci left: 1.032362e-03	ci right 1.147885e-03	k: 1383	n:1270000
CRTC1   1270000 perm   809 sec   (1570 perm/sec)   p_kst 1.088976e-03   p_cons 3.256850e-02   p_joint 2.283465e-04

Joint ci ratio: 2.282048e-01	ci left: 2.041827e-04	ci right 2.574967e-04	k: 294	n:1280000
Cons ci ratio: 1.888595e-02	ci left: 3.225413e-02	ci right 3.286986e-02	k: 41678	n:1280000
KS ci ratio: 1.049721e-01	ci left: 1.031143e-03	ci right 1.146134e-03	k: 1392	n:1280000
CRTC1   1280000 perm   820 sec   (1562 perm/sec)   p_kst 1.087500e-03   p_cons 3.256094e-02   p_joint 2.296875e-04

Joint ci ratio: 2.301644e-01	ci left: 1.989463e-04	ci right 2.514026e-04	k: 289	n:1290000
Cons ci ratio: 1.881067e-02	ci left: 3.226180e-02	ci right 3.287519e-02	k: 42012	n:1290000
KS ci ratio: 1.042262e-01	ci left: 1.038248e-03	ci right 1.153158e-03	k: 1412	n:1290000
CRTC1   1290000 perm   831 sec   (1553 perm/sec)   p_kst 1.094574e-03   p_cons 3.256744e-02   p_joint 2.240310e-04

Joint ci ratio: 2.301646e-01	ci left: 1.974159e-04	ci right 2.494688e-04	k: 289	n:1300000
Cons ci ratio: 1.873536e-02	ci left: 3.227241e-02	ci right 3.288352e-02	k: 42350	n:1300000
KS ci ratio: 1.039691e-01	ci left: 1.035506e-03	ci right 1.149812e-03	k: 1419	n:1300000
CRTC1   1300000 perm   842 sec   (1545 perm/sec)   p_kst 1.091538e-03   p_cons 3.257692e-02   p_joint 2.223077e-04

Joint ci ratio: 2.289831e-01	ci left: 1.980673e-04	ci right 2.499860e-04	k: 292	n:1310000
Cons ci ratio: 1.867023e-02	ci left: 3.225171e-02	ci right 3.286028e-02	k: 42647	n:1310000
KS ci ratio: 1.036050e-01	ci left: 1.035037e-03	ci right 1.148867e-03	k: 1429	n:1310000
CRTC1   1310000 perm   853 sec   (1536 perm/sec)   p_kst 1.090840e-03   p_cons 3.255496e-02   p_joint 2.229008e-04

Joint ci ratio: 2.285935e-01	ci left: 1.972810e-04	ci right 2.488931e-04	k: 293	n:1320000
Cons ci ratio: 1.860285e-02	ci left: 3.224113e-02	ci right 3.284728e-02	k: 42957	n:1320000
KS ci ratio: 1.032447e-01	ci left: 1.034575e-03	ci right 1.147935e-03	k: 1439	n:1320000
CRTC1   1320000 perm   864 sec   (1528 perm/sec)   p_kst 1.090152e-03   p_cons 3.254318e-02   p_joint 2.219697e-04

Joint ci ratio: 2.278199e-01	ci left: 1.972155e-04	ci right 2.486113e-04	k: 295	n:1330000
Cons ci ratio: 1.852691e-02	ci left: 3.226215e-02	ci right 3.286620e-02	k: 43309	n:1330000
KS ci ratio: 1.029592e-01	ci left: 1.032657e-03	ci right 1.145474e-03	k: 1447	n:1330000
CRTC1   1330000 perm   875 sec   (1520 perm/sec)   p_kst 1.087970e-03   p_cons 3.256316e-02   p_joint 2.218045e-04

Joint ci ratio: 2.266741e-01	ci left: 1.978551e-04	ci right 2.491220e-04	k: 298	n:1340000
Cons ci ratio: 1.845757e-02	ci left: 3.226355e-02	ci right 3.286534e-02	k: 43635	n:1340000
KS ci ratio: 1.021506e-01	ci left: 1.041674e-03	ci right 1.154530e-03	k: 1470	n:1340000
CRTC1   1340000 perm   886 sec   (1513 perm/sec)   p_kst 1.097015e-03   p_cons 3.256343e-02   p_joint 2.223881e-04

Joint ci ratio: 2.262961e-01	ci left: 1.970882e-04	ci right 2.480594e-04	k: 299	n:1350000
Cons ci ratio: 1.839052e-02	ci left: 3.225977e-02	ci right 3.285928e-02	k: 43954	n:1350000
KS ci ratio: 1.018396e-01	ci left: 1.040455e-03	ci right 1.152814e-03	k: 1479	n:1350000
CRTC1   1350000 perm   897 sec   (1505 perm/sec)   p_kst 1.095556e-03   p_cons 3.255852e-02   p_joint 2.214815e-04

Joint ci ratio: 2.248022e-01	ci left: 1.984140e-04	ci right 2.493424e-04	k: 303	n:1360000
Cons ci ratio: 1.832761e-02	ci left: 3.224433e-02	ci right 3.284148e-02	k: 44257	n:1360000
KS ci ratio: 1.013273e-01	ci left: 1.043554e-03	ci right 1.155647e-03	k: 1494	n:1360000
CRTC1   1360000 perm   909 sec   (1496 perm/sec)   p_kst 1.098529e-03   p_cons 3.254191e-02   p_joint 2.227941e-04

Joint ci ratio: 2.240664e-01	ci left: 1.983436e-04	ci right 2.490642e-04	k: 305	n:1370000
Cons ci ratio: 1.826133e-02	ci left: 3.224293e-02	ci right 3.283788e-02	k: 44579	n:1370000
KS ci ratio: 1.008895e-01	ci left: 1.045186e-03	ci right 1.156941e-03	k: 1507	n:1370000
CRTC1   1370000 perm   921 sec   (1488 perm/sec)   p_kst 1.100000e-03   p_cons 3.253942e-02   p_joint 2.226277e-04

Joint ci ratio: 2.215463e-01	ci left: 2.016957e-04	ci right 2.526144e-04	k: 312	n:1380000
Cons ci ratio: 1.819429e-02	ci left: 3.224661e-02	ci right 3.283941e-02	k: 44908	n:1380000
KS ci ratio: 1.004574e-01	ci left: 1.046795e-03	ci right 1.158214e-03	k: 1520	n:1380000
CRTC1   1380000 perm   933 sec   (1480 perm/sec)   p_kst 1.101449e-03   p_cons 3.254203e-02   p_joint 2.260870e-04

Joint ci ratio: 2.208419e-01	ci left: 2.016038e-04	ci right 2.523155e-04	k: 314	n:1390000
Cons ci ratio: 1.812881e-02	ci left: 3.224737e-02	ci right 3.283803e-02	k: 45233	n:1390000
KS ci ratio: 1.000307e-01	ci left: 1.048382e-03	ci right 1.159469e-03	k: 1533	n:1390000
CRTC1   1390000 perm   945 sec   (1471 perm/sec)   p_kst 1.102878e-03   p_cons 3.254173e-02   p_joint 2.258993e-04

Joint ci ratio: 2.191095e-01	ci left: 2.035385e-04	ci right 2.542811e-04	k: 319	n:1400000
Cons ci ratio: 1.806404e-02	ci left: 3.224813e-02	ci right 3.283667e-02	k: 45558	n:1400000
KS ci ratio: 9.954508e-02	ci left: 1.051341e-03	ci right 1.162168e-03	k: 1548	n:1400000
CRTC1   1400000 perm   957 sec   (1464 perm/sec)   p_kst 1.105714e-03   p_cons 3.254143e-02   p_joint 2.278571e-04

Joint ci ratio: 2.229765e-01	ci left: 1.947253e-04	ci right 2.442452e-04	k: 308	n:1410000
Cons ci ratio: 1.799671e-02	ci left: 3.226017e-02	ci right 3.284672e-02	k: 45899	n:1410000
KS ci ratio: 9.916169e-02	ci left: 1.052184e-03	ci right 1.162648e-03	k: 1560	n:1410000
CRTC1   1410000 perm   969 sec   (1456 perm/sec)   p_kst 1.106383e-03   p_cons 3.255248e-02   p_joint 2.184397e-04

Joint ci ratio: 2.355069e-01	ci left: 1.721116e-04	ci right 2.186994e-04	k: 276	n:1420000
Cons ci ratio: 1.793715e-02	ci left: 3.224751e-02	ci right 3.283186e-02	k: 46205	n:1420000
KS ci ratio: 9.865720e-02	ci left: 1.055763e-03	ci right 1.166007e-03	k: 1576	n:1420000
CRTC1   1420000 perm   981 sec   (1448 perm/sec)   p_kst 1.109859e-03   p_cons 3.253873e-02   p_joint 1.943662e-04

Joint ci ratio: 2.338245e-01	ci left: 1.735408e-04	ci right 2.201313e-04	k: 280	n:1430000
Cons ci ratio: 1.787638e-02	ci left: 3.224130e-02	ci right 3.282354e-02	k: 46520	n:1430000
KS ci ratio: 9.831491e-02	ci left: 1.055883e-03	ci right 1.165734e-03	k: 1587	n:1430000
CRTC1   1430000 perm   993 sec   (1441 perm/sec)   p_kst 1.109790e-03   p_cons 3.253147e-02   p_joint 1.958042e-04

Joint ci ratio: 2.430860e-01	ci left: 1.586231e-04	ci right 2.031502e-04	k: 259	n:1440000
Cons ci ratio: 1.781289e-02	ci left: 3.224693e-02	ci right 3.282718e-02	k: 46852	n:1440000
KS ci ratio: 9.782317e-02	ci left: 1.059389e-03	ci right 1.169022e-03	k: 1603	n:1440000
CRTC1   1440000 perm   1005 sec   (1433 perm/sec)   p_kst 1.113194e-03   p_cons 3.253611e-02   p_joint 1.798611e-04

Joint ci ratio: 2.426200e-01	ci left: 1.581768e-04	ci right 2.024807e-04	k: 260	n:1450000
Cons ci ratio: 1.775280e-02	ci left: 3.224287e-02	ci right 3.282107e-02	k: 47170	n:1450000
KS ci ratio: 9.742908e-02	ci left: 1.060829e-03	ci right 1.170144e-03	k: 1616	n:1450000
CRTC1   1450000 perm   1017 sec   (1426 perm/sec)   p_kst 1.114483e-03   p_cons 3.253103e-02   p_joint 1.793103e-04

Joint ci ratio: 2.289858e-01	ci left: 1.777177e-04	ci right 2.243028e-04	k: 292	n:1460000
Cons ci ratio: 1.769022e-02	ci left: 3.224978e-02	ci right 3.282605e-02	k: 47504	n:1460000
KS ci ratio: 9.601322e-02	ci left: 1.085646e-03	ci right 1.195801e-03	k: 1664	n:1460000
CRTC1   1460000 perm   1029 sec   (1419 perm/sec)   p_kst 1.139726e-03   p_cons 3.253699e-02   p_joint 2.000000e-04

Joint ci ratio: 2.274384e-01	ci left: 1.790743e-04	ci right 2.256533e-04	k: 296	n:1470000
Cons ci ratio: 1.763135e-02	ci left: 3.224576e-02	ci right 3.282002e-02	k: 47822	n:1470000
KS ci ratio: 9.549818e-02	ci left: 1.090212e-03	ci right 1.200204e-03	k: 1682	n:1470000
CRTC1   1470000 perm   1041 sec   (1411 perm/sec)   p_kst 1.144218e-03   p_cons 3.253197e-02   p_joint 2.013605e-04

Joint ci ratio: 2.255476e-01	ci left: 1.810511e-04	ci right 2.276983e-04	k: 301	n:1480000
Cons ci ratio: 1.757118e-02	ci left: 3.224853e-02	ci right 3.282086e-02	k: 48150	n:1480000
KS ci ratio: 9.507532e-02	ci left: 1.092739e-03	ci right 1.202471e-03	k: 1697	n:1480000
CRTC1   1480000 perm   1054 sec   (1405 perm/sec)   p_kst 1.146622e-03   p_cons 3.253378e-02   p_joint 2.033784e-04

Joint ci ratio: 2.355080e-01	ci left: 1.640258e-04	ci right 2.084250e-04	k: 276	n:1490000
Cons ci ratio: 1.751536e-02	ci left: 3.223790e-02	ci right 3.280821e-02	k: 48458	n:1490000
KS ci ratio: 9.468570e-02	ci left: 1.094579e-03	ci right 1.204019e-03	k: 1711	n:1490000
CRTC1   1490000 perm   1066 sec   (1397 perm/sec)   p_kst 1.148322e-03   p_cons 3.252215e-02   p_joint 1.852349e-04

Joint ci ratio: 1.616263e-01	ci left: 3.603174e-04	ci right 4.243040e-04	k: 587	n:1500000
Cons ci ratio: 1.745544e-02	ci left: 3.224402e-02	ci right 3.281246e-02	k: 48791	n:1500000
KS ci ratio: 9.948449e-02	ci left: 9.825497e-04	ci right 1.086059e-03	k: 1550	n:1500000
CRTC1   1500000 perm   1078 sec   (1391 perm/sec)   p_kst 1.033333e-03   p_cons 3.252733e-02   p_joint 3.913333e-04

Joint ci ratio: 1.612156e-01	ci left: 3.598377e-04	ci right 4.235610e-04	k: 590	n:1510000
Cons ci ratio: 1.739906e-02	ci left: 3.223950e-02	ci right 3.280601e-02	k: 49108	n:1510000
KS ci ratio: 9.910180e-02	ci left: 9.837925e-04	ci right 1.087011e-03	k: 1562	n:1510000
CRTC1   1510000 perm   1091 sec   (1384 perm/sec)   p_kst 1.034437e-03   p_cons 3.252185e-02   p_joint 3.907285e-04

Joint ci ratio: 1.641599e-01	ci left: 3.442168e-04	ci right 4.063970e-04	k: 569	n:1520000
Cons ci ratio: 1.733833e-02	ci left: 3.225273e-02	ci right 3.281747e-02	k: 49452	n:1520000
KS ci ratio: 9.881775e-02	ci left: 9.830946e-04	ci right 1.085927e-03	k: 1571	n:1520000
CRTC1   1520000 perm   1104 sec   (1377 perm/sec)   p_kst 1.033553e-03   p_cons 3.253421e-02   p_joint 3.743421e-04

Joint ci ratio: 1.635869e-01	ci left: 3.444742e-04	ci right 4.064623e-04	k: 573	n:1530000
Cons ci ratio: 1.728254e-02	ci left: 3.225017e-02	ci right 3.281304e-02	k: 49772	n:1530000
KS ci ratio: 9.844268e-02	ci left: 9.843189e-04	ci right 1.086866e-03	k: 1583	n:1530000
CRTC1   1530000 perm   1117 sec   (1370 perm/sec)   p_kst 1.034641e-03   p_cons 3.253072e-02   p_joint 3.745098e-04

Joint ci ratio: 1.666654e-01	ci left: 3.291642e-04	ci right 3.896239e-04	k: 552	n:1540000
Cons ci ratio: 1.722870e-02	ci left: 3.224248e-02	ci right 3.280344e-02	k: 50084	n:1540000
KS ci ratio: 9.813341e-02	ci left: 9.842611e-04	ci right 1.086461e-03	k: 1593	n:1540000
CRTC1   1540000 perm   1130 sec   (1363 perm/sec)   p_kst 1.034416e-03   p_cons 3.252208e-02   p_joint 3.584416e-04

Joint ci ratio: 1.657684e-01	ci left: 3.307505e-04	ci right 3.911420e-04	k: 558	n:1550000
Cons ci ratio: 1.716850e-02	ci left: 3.225994e-02	ci right 3.281923e-02	k: 50435	n:1550000
KS ci ratio: 9.770516e-02	ci left: 9.867222e-04	ci right 1.088705e-03	k: 1607	n:1550000
CRTC1   1550000 perm   1143 sec   (1357 perm/sec)   p_kst 1.036774e-03   p_cons 3.253871e-02   p_joint 3.600000e-04

Joint ci ratio: 1.677311e-01	ci left: 3.206446e-04	ci right 3.799541e-04	k: 545	n:1560000
Cons ci ratio: 1.712007e-02	ci left: 3.223633e-02	ci right 3.279361e-02	k: 50722	n:1560000
KS ci ratio: 9.728247e-02	ci left: 9.891526e-04	ci right 1.090920e-03	k: 1621	n:1560000
CRTC1   1560000 perm   1156 sec   (1350 perm/sec)   p_kst 1.039103e-03   p_cons 3.251410e-02   p_joint 3.493590e-04

Joint ci ratio: 1.674248e-01	ci left: 3.198227e-04	ci right 3.788613e-04	k: 547	n:1570000
Cons ci ratio: 1.706722e-02	ci left: 3.223078e-02	ci right 3.278623e-02	k: 51037	n:1570000
KS ci ratio: 9.698398e-02	ci left: 9.890670e-04	ci right 1.090495e-03	k: 1631	n:1570000
CRTC1   1570000 perm   1169 sec   (1343 perm/sec)   p_kst 1.038854e-03   p_cons 3.250764e-02   p_joint 3.484076e-04

Joint ci ratio: 1.669684e-01	ci left: 3.196178e-04	ci right 3.784415e-04	k: 550	n:1580000
Cons ci ratio: 1.701074e-02	ci left: 3.224043e-02	ci right 3.279419e-02	k: 51376	n:1580000
KS ci ratio: 9.662933e-02	ci left: 9.902181e-04	ci right 1.091372e-03	k: 1643	n:1580000
CRTC1   1580000 perm   1182 sec   (1337 perm/sec)   p_kst 1.039873e-03   p_cons 3.251646e-02   p_joint 3.481013e-04

Joint ci ratio: 1.660666e-01	ci left: 3.212240e-04	ci right 3.799921e-04	k: 556	n:1590000
Cons ci ratio: 1.695872e-02	ci left: 3.223556e-02	ci right 3.278753e-02	k: 51692	n:1590000
KS ci ratio: 9.639515e-02	ci left: 9.889003e-04	ci right 1.089661e-03	k: 1651	n:1590000
CRTC1   1590000 perm   1195 sec   (1330 perm/sec)   p_kst 1.038365e-03   p_cons 3.251069e-02   p_joint 3.496855e-04

Joint ci ratio: 1.654735e-01	ci left: 3.216126e-04	ci right 3.802207e-04	k: 560	n:1600000
Cons ci ratio: 1.690163e-02	ci left: 3.225129e-02	ci right 3.280165e-02	k: 52041	n:1600000
KS ci ratio: 9.619167e-02	ci left: 9.869893e-04	ci right 1.087331e-03	k: 1658	n:1600000
CRTC1   1600000 perm   1208 sec   (1324 perm/sec)   p_kst 1.036250e-03   p_cons 3.252563e-02   p_joint 3.500000e-04

Joint ci ratio: 1.650328e-01	ci left: 3.214013e-04	ci right 3.797995e-04	k: 563	n:1610000
Cons ci ratio: 1.684760e-02	ci left: 3.225755e-02	ci right 3.280624e-02	k: 52375	n:1610000
KS ci ratio: 9.573098e-02	ci left: 9.905584e-04	ci right 1.090753e-03	k: 1674	n:1610000
CRTC1   1610000 perm   1221 sec   (1318 perm/sec)   p_kst 1.039752e-03   p_cons 3.253106e-02   p_joint 3.496894e-04

Joint ci ratio: 1.647411e-01	ci left: 3.206010e-04	ci right 3.787405e-04	k: 565	n:1620000
Cons ci ratio: 1.679591e-02	ci left: 3.225698e-02	ci right 3.280396e-02	k: 52698	n:1620000
KS ci ratio: 9.544650e-02	ci left: 9.904691e-04	ci right 1.090341e-03	k: 1684	n:1620000
CRTC1   1620000 perm   1236 sec   (1311 perm/sec)   p_kst 1.039506e-03   p_cons 3.252963e-02   p_joint 3.487654e-04

Joint ci ratio: 1.692903e-01	ci left: 3.009981e-04	ci right 3.572439e-04	k: 535	n:1630000
Cons ci ratio: 1.675170e-02	ci left: 3.223014e-02	ci right 3.277521e-02	k: 52978	n:1630000
KS ci ratio: 9.513645e-02	ci left: 9.909803e-04	ci right 1.090561e-03	k: 1695	n:1630000
CRTC1   1630000 perm   1249 sec   (1305 perm/sec)   p_kst 1.039877e-03   p_cons 3.250184e-02   p_joint 3.282209e-04

Joint ci ratio: 1.691327e-01	ci left: 2.997467e-04	ci right 3.557012e-04	k: 536	n:1640000
Cons ci ratio: 1.670056e-02	ci left: 3.223095e-02	ci right 3.277436e-02	k: 53303	n:1640000
KS ci ratio: 9.488507e-02	ci left: 9.902951e-04	ci right 1.089529e-03	k: 1704	n:1640000
CRTC1   1640000 perm   1263 sec   (1299 perm/sec)   p_kst 1.039024e-03   p_cons 3.250183e-02   p_joint 3.268293e-04

Joint ci ratio: 1.696075e-01	ci left: 2.961888e-04	ci right 3.516503e-04	k: 533	n:1650000
Cons ci ratio: 1.664683e-02	ci left: 3.224323e-02	ci right 3.278508e-02	k: 53647	n:1650000
KS ci ratio: 9.471868e-02	ci left: 9.878434e-04	ci right 1.086649e-03	k: 1710	n:1650000
CRTC1   1650000 perm   1276 sec   (1293 perm/sec)   p_kst 1.036364e-03   p_cons 3.251333e-02   p_joint 3.230303e-04

Joint ci ratio: 1.798361e-01	ci left: 2.604149e-04	ci right 3.124389e-04	k: 474	n:1660000
Cons ci ratio: 1.659664e-02	ci left: 3.224396e-02	ci right 3.278417e-02	k: 53972	n:1660000
KS ci ratio: 9.436081e-02	ci left: 9.895388e-04	ci right 1.088119e-03	k: 1723	n:1660000
CRTC1   1660000 perm   1290 sec   (1287 perm/sec)   p_kst 1.037952e-03   p_cons 3.251325e-02   p_joint 2.855422e-04

Joint ci ratio: 1.790836e-01	ci left: 2.611432e-04	ci right 3.130707e-04	k: 478	n:1670000
Cons ci ratio: 1.654736e-02	ci left: 3.224290e-02	ci right 3.278148e-02	k: 54294	n:1670000
KS ci ratio: 9.411551e-02	ci left: 9.888756e-04	ci right 1.087119e-03	k: 1732	n:1670000
CRTC1   1670000 perm   1303 sec   (1282 perm/sec)   p_kst 1.037126e-03   p_cons 3.251138e-02   p_joint 2.862275e-04

Joint ci ratio: 1.781561e-01	ci left: 2.624319e-04	ci right 3.143163e-04	k: 483	n:1680000
Cons ci ratio: 1.649962e-02	ci left: 3.223770e-02	ci right 3.277462e-02	k: 54609	n:1680000
KS ci ratio: 9.365708e-02	ci left: 9.928710e-04	ci right 1.091005e-03	k: 1749	n:1680000
CRTC1   1680000 perm   1317 sec   (1276 perm/sec)   p_kst 1.041071e-03   p_cons 3.250536e-02   p_joint 2.875000e-04

Joint ci ratio: 1.787111e-01	ci left: 2.591831e-04	ci right 3.106021e-04	k: 480	n:1690000
Cons ci ratio: 1.645245e-02	ci left: 3.223198e-02	ci right 3.276725e-02	k: 54923	n:1690000
KS ci ratio: 9.360384e-02	ci left: 9.881516e-04	ci right 1.085761e-03	k: 1751	n:1690000
CRTC1   1690000 perm   1331 sec   (1269 perm/sec)   p_kst 1.036095e-03   p_cons 3.249882e-02   p_joint 2.840237e-04

Joint ci ratio: 1.779726e-01	ci left: 2.599065e-04	ci right 3.112329e-04	k: 484	n:1700000
Cons ci ratio: 1.640567e-02	ci left: 3.222633e-02	ci right 3.275997e-02	k: 55237	n:1700000
KS ci ratio: 9.328487e-02	ci left: 9.892328e-04	ci right 1.086597e-03	k: 1763	n:1700000
CRTC1   1700000 perm   1346 sec   (1263 perm/sec)   p_kst 1.037059e-03   p_cons 3.249235e-02   p_joint 2.847059e-04

Joint ci ratio: 1.770621e-01	ci left: 2.611806e-04	ci right 3.124666e-04	k: 489	n:1710000
Cons ci ratio: 1.635914e-02	ci left: 3.222133e-02	ci right 3.275336e-02	k: 55552	n:1710000
KS ci ratio: 9.294295e-02	ci left: 9.908732e-04	ci right 1.088022e-03	k: 1776	n:1710000
CRTC1   1710000 perm   1360 sec   (1257 perm/sec)   p_kst 1.038596e-03   p_cons 3.248655e-02   p_joint 2.859649e-04

Joint ci ratio: 1.318099e-01	ci left: 4.800729e-04	ci right 5.483713e-04	k: 883	n:1720000
Cons ci ratio: 1.631014e-02	ci left: 3.222739e-02	ci right 3.275791e-02	k: 55886	n:1720000
KS ci ratio: 9.244979e-02	ci left: 9.959029e-04	ci right 1.092999e-03	k: 1795	n:1720000
CRTC1   1720000 perm   1375 sec   (1251 perm/sec)   p_kst 1.043605e-03   p_cons 3.249186e-02   p_joint 5.133721e-04

Joint ci ratio: 1.312174e-01	ci left: 4.817701e-04	ci right 5.499779e-04	k: 891	n:1730000
Cons ci ratio: 1.625814e-02	ci left: 3.224662e-02	ci right 3.277575e-02	k: 56243	n:1730000
KS ci ratio: 9.198976e-02	ci left: 1.000311e-03	ci right 1.097326e-03	k: 1813	n:1730000
CRTC1   1730000 perm   1389 sec   (1246 perm/sec)   p_kst 1.047977e-03   p_cons 3.251040e-02   p_joint 5.150289e-04

Joint ci ratio: 1.307783e-01	ci left: 4.823366e-04	ci right 5.503783e-04	k: 897	n:1740000
Cons ci ratio: 1.621256e-02	ci left: 3.224274e-02	ci right 3.277031e-02	k: 56560	n:1740000
KS ci ratio: 9.173726e-02	ci left: 1.000177e-03	ci right 1.096898e-03	k: 1823	n:1740000
CRTC1   1740000 perm   1403 sec   (1240 perm/sec)   p_kst 1.047701e-03   p_cons 3.250575e-02   p_joint 5.155172e-04

Joint ci ratio: 1.304880e-01	ci left: 4.817914e-04	ci right 5.495936e-04	k: 901	n:1750000
Cons ci ratio: 1.616486e-02	ci left: 3.224858e-02	ci right 3.277468e-02	k: 56894	n:1750000
KS ci ratio: 9.151181e-02	ci left: 9.994868e-04	ci right 1.095891e-03	k: 1832	n:1750000
CRTC1   1750000 perm   1417 sec   (1235 perm/sec)   p_kst 1.046857e-03   p_cons 3.251086e-02   p_joint 5.148571e-04

Joint ci ratio: 1.300562e-01	ci left: 4.823519e-04	ci right 5.499911e-04	k: 907	n:1760000
Cons ci ratio: 1.611408e-02	ci left: 3.226794e-02	ci right 3.279269e-02	k: 57252	n:1760000
KS ci ratio: 9.121369e-02	ci left: 1.000470e-03	ci right 1.096638e-03	k: 1844	n:1760000
CRTC1   1760000 perm   1431 sec   (1230 perm/sec)   p_kst 1.047727e-03   p_cons 3.252955e-02   p_joint 5.153409e-04

Joint ci ratio: 1.297707e-01	ci left: 4.818132e-04	ci right 5.492171e-04	k: 911	n:1770000
Cons ci ratio: 1.607301e-02	ci left: 3.225107e-02	ci right 3.277419e-02	k: 57546	n:1770000
KS ci ratio: 9.094297e-02	ci left: 1.000891e-03	ci right 1.096799e-03	k: 1855	n:1770000
CRTC1   1770000 perm   1446 sec   (1224 perm/sec)   p_kst 1.048023e-03   p_cons 3.251186e-02   p_joint 5.146893e-04

Joint ci ratio: 1.294164e-01	ci left: 4.818243e-04	ci right 5.490316e-04	k: 916	n:1780000
Cons ci ratio: 1.603211e-02	ci left: 3.223494e-02	ci right 3.275647e-02	k: 57841	n:1780000
KS ci ratio: 9.067465e-02	ci left: 1.001308e-03	ci right 1.096957e-03	k: 1866	n:1780000
CRTC1   1780000 perm   1461 sec   (1219 perm/sec)   p_kst 1.048315e-03   p_cons 3.249494e-02   p_joint 5.146067e-04

Joint ci ratio: 1.306338e-01	ci left: 4.699441e-04	ci right 5.361586e-04	k: 899	n:1790000
Cons ci ratio: 1.598527e-02	ci left: 3.224349e-02	ci right 3.276361e-02	k: 58180	n:1790000
KS ci ratio: 9.043280e-02	ci left: 1.001174e-03	ci right 1.096542e-03	k: 1876	n:1790000
CRTC1   1790000 perm   1475 sec   (1213 perm/sec)   p_kst 1.048045e-03   p_cons 3.250279e-02   p_joint 5.022346e-04

Joint ci ratio: 1.304890e-01	ci left: 4.684081e-04	ci right 5.343274e-04	k: 901	n:1800000
Cons ci ratio: 1.594025e-02	ci left: 3.224641e-02	ci right 3.276510e-02	k: 58509	n:1800000
KS ci ratio: 9.026473e-02	ci left: 9.994127e-04	ci right 1.094427e-03	k: 1883	n:1800000
CRTC1   1800000 perm   1490 sec   (1208 perm/sec)   p_kst 1.046111e-03   p_cons 3.250500e-02   p_joint 5.005556e-04

Joint ci ratio: 1.302006e-01	ci left: 4.679581e-04	ci right 5.336573e-04	k: 905	n:1810000
Cons ci ratio: 1.589770e-02	ci left: 3.224104e-02	ci right 3.275825e-02	k: 58823	n:1810000
KS ci ratio: 8.997859e-02	ci left: 1.000371e-03	ci right 1.095159e-03	k: 1895	n:1810000
CRTC1   1810000 perm   1505 sec   (1203 perm/sec)   p_kst 1.046961e-03   p_cons 3.249890e-02   p_joint 5.000000e-04

Joint ci ratio: 1.298428e-01	ci left: 4.680448e-04	ci right 5.335617e-04	k: 910	n:1820000
Cons ci ratio: 1.585355e-02	ci left: 3.224340e-02	ci right 3.275919e-02	k: 59151	n:1820000
KS ci ratio: 8.976583e-02	ci left: 9.997089e-04	ci right 1.094198e-03	k: 1904	n:1820000
CRTC1   1820000 perm   1519 sec   (1198 perm/sec)   p_kst 1.046154e-03   p_cons 3.250055e-02   p_joint 5.000000e-04

Joint ci ratio: 1.297718e-01	ci left: 4.660158e-04	ci right 5.312103e-04	k: 911	n:1830000
Cons ci ratio: 1.580825e-02	ci left: 3.225172e-02	ci right 3.276616e-02	k: 59490	n:1830000
KS ci ratio: 8.964839e-02	ci left: 9.969168e-04	ci right 1.091012e-03	k: 1909	n:1830000
CRTC1   1830000 perm   1535 sec   (1192 perm/sec)   p_kst 1.043169e-03   p_cons 3.250820e-02   p_joint 4.978142e-04

Joint ci ratio: 1.295589e-01	ci left: 4.650607e-04	ci right 5.300066e-04	k: 914	n:1840000
Cons ci ratio: 1.576538e-02	ci left: 3.225183e-02	ci right 3.276486e-02	k: 59814	n:1840000
KS ci ratio: 8.939134e-02	ci left: 9.973433e-04	ci right 1.091195e-03	k: 1920	n:1840000
CRTC1   1840000 perm   1550 sec   (1187 perm/sec)   p_kst 1.043478e-03   p_cons 3.250761e-02   p_joint 4.967391e-04

Joint ci ratio: 1.291362e-01	ci left: 4.656851e-04	ci right 5.304898e-04	k: 920	n:1850000
Cons ci ratio: 1.572313e-02	ci left: 3.225086e-02	ci right 3.276249e-02	k: 60136	n:1850000
KS ci ratio: 8.909033e-02	ci left: 9.988224e-04	ci right 1.092480e-03	k: 1933	n:1850000
CRTC1   1850000 perm   1565 sec   (1182 perm/sec)   p_kst 1.044865e-03   p_cons 3.250595e-02   p_joint 4.972973e-04

Joint ci ratio: 1.163716e-01	ci left: 5.741925e-04	ci right 6.456568e-04	k: 1133	n:1860000
Cons ci ratio: 1.568028e-02	ci left: 3.225366e-02	ci right 3.276393e-02	k: 60465	n:1860000
KS ci ratio: 8.594497e-02	ci left: 1.069180e-03	ci right 1.165718e-03	k: 2077	n:1860000
CRTC1   1860000 perm   1580 sec   (1177 perm/sec)   p_kst 1.116667e-03   p_cons 3.250806e-02   p_joint 6.091398e-04

Joint ci ratio: 1.161159e-01	ci left: 5.737180e-04	ci right 6.449556e-04	k: 1138	n:1870000
Cons ci ratio: 1.563738e-02	ci left: 3.225802e-02	ci right 3.276695e-02	k: 60797	n:1870000
KS ci ratio: 8.569786e-02	ci left: 1.069741e-03	ci right 1.166039e-03	k: 2089	n:1870000
CRTC1   1870000 perm   1595 sec   (1172 perm/sec)   p_kst 1.117112e-03   p_cons 3.251176e-02   p_joint 6.085561e-04

Joint ci ratio: 1.169930e-01	ci left: 5.618872e-04	ci right 6.322192e-04	k: 1121	n:1880000
Cons ci ratio: 1.559984e-02	ci left: 3.224221e-02	ci right 3.274966e-02	k: 61091	n:1880000
KS ci ratio: 8.549360e-02	ci left: 1.069257e-03	ci right 1.165270e-03	k: 2099	n:1880000
CRTC1   1880000 perm   1610 sec   (1168 perm/sec)   p_kst 1.116489e-03   p_cons 3.249521e-02   p_joint 5.962766e-04

Joint ci ratio: 1.165781e-01	ci left: 5.630234e-04	ci right 6.332305e-04	k: 1129	n:1890000
Cons ci ratio: 1.555969e-02	ci left: 3.223816e-02	ci right 3.274423e-02	k: 61407	n:1890000
KS ci ratio: 8.531104e-02	ci left: 1.068259e-03	ci right 1.163968e-03	k: 2108	n:1890000
CRTC1   1890000 perm   1626 sec   (1163 perm/sec)   p_kst 1.115344e-03   p_cons 3.249048e-02   p_joint 5.973545e-04

Joint ci ratio: 1.162186e-01	ci left: 5.636371e-04	ci right 6.336891e-04	k: 1136	n:1900000
Cons ci ratio: 1.551985e-02	ci left: 3.223415e-02	ci right 3.273885e-02	k: 61723	n:1900000
KS ci ratio: 8.514976e-02	ci left: 1.066758e-03	ci right 1.162142e-03	k: 2116	n:1900000
CRTC1   1900000 perm   1641 sec   (1158 perm/sec)   p_kst 1.113684e-03   p_cons 3.248579e-02   p_joint 5.978947e-04

Joint ci ratio: 1.164753e-01	ci left: 5.581444e-04	ci right 6.276775e-04	k: 1131	n:1910000
Cons ci ratio: 1.547838e-02	ci left: 3.223802e-02	ci right 3.274141e-02	k: 62054	n:1910000
KS ci ratio: 8.492940e-02	ci left: 1.066809e-03	ci right 1.161939e-03	k: 2127	n:1910000
CRTC1   1910000 perm   1657 sec   (1152 perm/sec)   p_kst 1.113613e-03   p_cons 3.248901e-02   p_joint 5.921466e-04

Joint ci ratio: 1.256376e-01	ci left: 4.749276e-04	ci right 5.390946e-04	k: 972	n:1920000
Cons ci ratio: 1.543544e-02	ci left: 3.224910e-02	ci right 3.275127e-02	k: 62399	n:1920000
KS ci ratio: 8.447386e-02	ci left: 1.072979e-03	ci right 1.168120e-03	k: 2150	n:1920000
CRTC1   1920000 perm   1673 sec   (1148 perm/sec)   p_kst 1.119792e-03   p_cons 3.249948e-02   p_joint 5.062500e-04

Joint ci ratio: 1.253801e-01	ci left: 4.744743e-04	ci right 5.384389e-04	k: 976	n:1930000
Cons ci ratio: 1.539325e-02	ci left: 3.225853e-02	ci right 3.275945e-02	k: 62741	n:1930000
KS ci ratio: 8.431728e-02	ci left: 1.071477e-03	ci right 1.166300e-03	k: 2158	n:1930000
CRTC1   1930000 perm   1689 sec   (1143 perm/sec)   p_kst 1.118135e-03   p_cons 3.250829e-02   p_joint 5.056995e-04

Joint ci ratio: 1.249333e-01	ci left: 4.755239e-04	ci right 5.393846e-04	k: 983	n:1940000
Cons ci ratio: 1.534964e-02	ci left: 3.227505e-02	ci right 3.277480e-02	k: 63097	n:1940000
KS ci ratio: 8.389071e-02	ci left: 1.077055e-03	ci right 1.171867e-03	k: 2180	n:1940000
CRTC1   1940000 perm   1704 sec   (1139 perm/sec)   p_kst 1.123711e-03   p_cons 3.252423e-02   p_joint 5.067010e-04

Joint ci ratio: 1.247434e-01	ci left: 4.745757e-04	ci right 5.382050e-04	k: 986	n:1950000
Cons ci ratio: 1.531038e-02	ci left: 3.227506e-02	ci right 3.277351e-02	k: 63421	n:1950000
KS ci ratio: 8.371820e-02	ci left: 1.076051e-03	ci right 1.170569e-03	k: 2189	n:1950000
CRTC1   1950000 perm   1719 sec   (1134 perm/sec)   p_kst 1.122564e-03   p_cons 3.252359e-02   p_joint 5.056410e-04

Joint ci ratio: 1.246173e-01	ci left: 4.731429e-04	ci right 5.365113e-04	k: 988	n:1960000
Cons ci ratio: 1.526759e-02	ci left: 3.229082e-02	ci right 3.278811e-02	k: 63776	n:1960000
KS ci ratio: 8.356578e-02	ci left: 1.074557e-03	ci right 1.168764e-03	k: 2197	n:1960000
CRTC1   1960000 perm   1735 sec   (1130 perm/sec)   p_kst 1.120918e-03   p_cons 3.253878e-02   p_joint 5.040816e-04

Joint ci ratio: 1.244288e-01	ci left: 4.722166e-04	ci right 5.353582e-04	k: 991	n:1970000
Cons ci ratio: 1.522761e-02	ci left: 3.229631e-02	ci right 3.279238e-02	k: 64111	n:1970000
KS ci ratio: 8.335746e-02	ci left: 1.074569e-03	ci right 1.168531e-03	k: 2208	n:1970000
CRTC1   1970000 perm   1751 sec   (1125 perm/sec)   p_kst 1.120812e-03   p_cons 3.254365e-02   p_joint 5.030457e-04

Joint ci ratio: 1.249975e-01	ci left: 4.654279e-04	ci right 5.279673e-04	k: 982	n:1980000
Cons ci ratio: 1.518929e-02	ci left: 3.229621e-02	ci right 3.279102e-02	k: 64435	n:1980000
KS ci ratio: 8.315069e-02	ci left: 1.074582e-03	ci right 1.168301e-03	k: 2219	n:1980000
CRTC1   1980000 perm   1767 sec   (1121 perm/sec)   p_kst 1.120707e-03   p_cons 3.254293e-02   p_joint 4.959596e-04

Joint ci ratio: 1.247440e-01	ci left: 4.650363e-04	ci right 5.273870e-04	k: 986	n:1990000
Cons ci ratio: 1.515089e-02	ci left: 3.229762e-02	ci right 3.279118e-02	k: 64762	n:1990000
KS ci ratio: 8.287111e-02	ci left: 1.076564e-03	ci right 1.170124e-03	k: 2234	n:1990000
CRTC1   1990000 perm   1782 sec   (1117 perm/sec)   p_kst 1.122613e-03   p_cons 3.254372e-02   p_joint 4.954774e-04

Joint ci ratio: 1.244920e-01	ci left: 4.646488e-04	ci right 5.268124e-04	k: 990	n:2000000
Cons ci ratio: 1.511026e-02	ci left: 3.230947e-02	ci right 3.280188e-02	k: 65110	n:2000000
KS ci ratio: 8.268637e-02	ci left: 1.076077e-03	ci right 1.169377e-03	k: 2244	n:2000000
CRTC1   2000000 perm   1798 sec   (1112 perm/sec)   p_kst 1.122000e-03   p_cons 3.255500e-02   p_joint 4.950000e-04

Joint ci ratio: 1.243041e-01	ci left: 4.637832e-04	ci right 5.257304e-04	k: 993	n:2010000
Cons ci ratio: 1.507173e-02	ci left: 3.231378e-02	ci right 3.280499e-02	k: 65443	n:2010000
KS ci ratio: 8.255784e-02	ci left: 1.074134e-03	ci right 1.167114e-03	k: 2251	n:2010000
CRTC1   2010000 perm   1814 sec   (1108 perm/sec)   p_kst 1.119900e-03   p_cons 3.255871e-02   p_joint 4.940299e-04

Joint ci ratio: 1.257038e-01	ci left: 4.509365e-04	ci right 5.118966e-04	k: 971	n:2020000
Cons ci ratio: 1.503611e-02	ci left: 3.230719e-02	ci right 3.279713e-02	k: 65754	n:2020000
KS ci ratio: 8.241166e-02	ci left: 1.072695e-03	ci right 1.165378e-03	k: 2259	n:2020000
CRTC1   2020000 perm   1831 sec   (1103 perm/sec)   p_kst 1.118317e-03   p_cons 3.255149e-02   p_joint 4.806931e-04

Joint ci ratio: 1.272859e-01	ci left: 4.372664e-04	ci right 4.971786e-04	k: 947	n:2030000
Cons ci ratio: 1.499850e-02	ci left: 3.230999e-02	ci right 3.279873e-02	k: 66084	n:2030000
KS ci ratio: 8.222996e-02	ci left: 1.072236e-03	ci right 1.164665e-03	k: 2269	n:2030000
CRTC1   2030000 perm   1847 sec   (1099 perm/sec)   p_kst 1.117734e-03   p_cons 3.255369e-02   p_joint 4.665025e-04

Joint ci ratio: 1.271519e-01	ci left: 4.360721e-04	ci right 4.957530e-04	k: 949	n:2040000
Cons ci ratio: 1.495966e-02	ci left: 3.231912e-02	ci right 3.280672e-02	k: 66427	n:2040000
KS ci ratio: 8.203145e-02	ci left: 1.072261e-03	ci right 1.164459e-03	k: 2280	n:2040000
CRTC1   2040000 perm   1864 sec   (1094 perm/sec)   p_kst 1.117647e-03   p_cons 3.256225e-02   p_joint 4.651961e-04

Joint ci ratio: 1.267523e-01	ci left: 4.367788e-04	ci right 4.963544e-04	k: 955	n:2050000
Cons ci ratio: 1.492482e-02	ci left: 3.231260e-02	ci right 3.279896e-02	k: 66738	n:2050000
KS ci ratio: 8.178081e-02	ci left: 1.073720e-03	ci right 1.165747e-03	k: 2294	n:2050000
CRTC1   2050000 perm   1880 sec   (1090 perm/sec)   p_kst 1.119024e-03   p_cons 3.255512e-02   p_joint 4.658537e-04

Joint ci ratio: 1.264879e-01	ci left: 4.365388e-04	ci right 4.959482e-04	k: 959	n:2060000
Cons ci ratio: 1.488988e-02	ci left: 3.230760e-02	ci right 3.279274e-02	k: 67052	n:2060000
KS ci ratio: 8.167421e-02	ci left: 1.071361e-03	ci right 1.163061e-03	k: 2300	n:2060000
CRTC1   2060000 perm   1897 sec   (1086 perm/sec)   p_kst 1.116505e-03   p_cons 3.254951e-02   p_joint 4.655340e-04

Joint ci ratio: 1.262253e-01	ci left: 4.363012e-04	ci right 4.955457e-04	k: 963	n:2070000
Cons ci ratio: 1.485393e-02	ci left: 3.230795e-02	ci right 3.279191e-02	k: 67377	n:2070000
KS ci ratio: 8.151500e-02	ci left: 1.070444e-03	ci right 1.161878e-03	k: 2309	n:2070000
CRTC1   2070000 perm   1914 sec   (1082 perm/sec)   p_kst 1.115459e-03   p_cons 3.254928e-02   p_joint 4.652174e-04

Joint ci ratio: 1.260294e-01	ci left: 4.356003e-04	ci right 4.946511e-04	k: 966	n:2080000
Cons ci ratio: 1.481642e-02	ci left: 3.231596e-02	ci right 3.279881e-02	k: 67718	n:2080000
KS ci ratio: 8.130407e-02	ci left: 1.070950e-03	ci right 1.162179e-03	k: 2321	n:2080000
CRTC1   2080000 perm   1931 sec   (1077 perm/sec)   p_kst 1.115865e-03   p_cons 3.255673e-02   p_joint 4.644231e-04

Joint ci ratio: 1.257048e-01	ci left: 4.358332e-04	ci right 4.947520e-04	k: 971	n:2090000
Cons ci ratio: 1.477909e-02	ci left: 3.232437e-02	ci right 3.280612e-02	k: 68060	n:2090000
KS ci ratio: 8.112959e-02	ci left: 1.070513e-03	ci right 1.161500e-03	k: 2331	n:2090000
CRTC1   2090000 perm   1947 sec   (1073 perm/sec)   p_kst 1.115311e-03   p_cons 3.256459e-02   p_joint 4.645933e-04

Joint ci ratio: 1.253827e-01	ci left: 4.360639e-04	ci right 4.948517e-04	k: 976	n:2100000
Cons ci ratio: 1.474260e-02	ci left: 3.233033e-02	ci right 3.281096e-02	k: 68397	n:2100000
KS ci ratio: 8.095622e-02	ci left: 1.070081e-03	ci right 1.160828e-03	k: 2341	n:2100000
CRTC1   2100000 perm   1964 sec   (1069 perm/sec)   p_kst 1.114762e-03   p_cons 3.257000e-02   p_joint 4.647619e-04

Joint ci ratio: 1.252546e-01	ci left: 4.349154e-04	ci right 4.934840e-04	k: 978	n:2110000
Cons ci ratio: 1.470548e-02	ci left: 3.234001e-02	ci right 3.281957e-02	k: 68742	n:2110000
KS ci ratio: 8.080115e-02	ci left: 1.069188e-03	ci right 1.159678e-03	k: 2350	n:2110000
CRTC1   2110000 perm   1981 sec   (1065 perm/sec)   p_kst 1.113744e-03   p_cons 3.257915e-02   p_joint 4.635071e-04

Joint ci ratio: 1.291403e-01	ci left: 4.063754e-04	ci right 4.629284e-04	k: 920	n:2120000
Cons ci ratio: 1.466810e-02	ci left: 3.235195e-02	ci right 3.283046e-02	k: 69092	n:2120000
KS ci ratio: 8.057864e-02	ci left: 1.070153e-03	ci right 1.160463e-03	k: 2363	n:2120000
CRTC1   2120000 perm   1998 sec   (1061 perm/sec)   p_kst 1.114623e-03   p_cons 3.259057e-02   p_joint 4.339623e-04

Joint ci ratio: 1.289305e-01	ci left: 4.058305e-04	ci right 4.622089e-04	k: 923	n:2130000
Cons ci ratio: 1.463591e-02	ci left: 3.234273e-02	ci right 3.282004e-02	k: 69397	n:2130000
KS ci ratio: 8.025662e-02	ci left: 1.073870e-03	ci right 1.164115e-03	k: 2382	n:2130000
CRTC1   2130000 perm   2015 sec   (1057 perm/sec)   p_kst 1.118310e-03   p_cons 3.258075e-02   p_joint 4.333333e-04

Joint ci ratio: 1.285139e-01	ci left: 4.066475e-04	ci right 4.629430e-04	k: 929	n:2140000
Cons ci ratio: 1.460349e-02	ci left: 3.233546e-02	ci right 3.281160e-02	k: 69706	n:2140000
KS ci ratio: 8.010553e-02	ci left: 1.072973e-03	ci right 1.162965e-03	k: 2391	n:2140000
CRTC1   2140000 perm   2033 sec   (1053 perm/sec)   p_kst 1.117290e-03   p_cons 3.257290e-02   p_joint 4.341121e-04

Joint ci ratio: 1.281698e-01	ci left: 4.070071e-04	ci right 4.631900e-04	k: 934	n:2150000
Cons ci ratio: 1.457183e-02	ci left: 3.232594e-02	ci right 3.280090e-02	k: 70010	n:2150000
KS ci ratio: 7.992198e-02	ci left: 1.072997e-03	ci right 1.162774e-03	k: 2402	n:2150000
CRTC1   2150000 perm   2051 sec   (1049 perm/sec)   p_kst 1.117209e-03   p_cons 3.256279e-02   p_joint 4.344186e-04

Joint ci ratio: 1.278965e-01	ci left: 4.069153e-04	ci right 4.629567e-04	k: 938	n:2160000
Cons ci ratio: 1.453994e-02	ci left: 3.231836e-02	ci right 3.279216e-02	k: 70318	n:2160000
KS ci ratio: 7.978934e-02	ci left: 1.071659e-03	ci right 1.161169e-03	k: 2410	n:2160000
CRTC1   2160000 perm   2068 sec   (1044 perm/sec)   p_kst 1.115741e-03   p_cons 3.255463e-02   p_joint 4.342593e-04

Joint ci ratio: 1.282387e-01	ci left: 4.028098e-04	ci right 4.584454e-04	k: 933	n:2170000
Cons ci ratio: 1.450636e-02	ci left: 3.231911e-02	ci right 3.279182e-02	k: 70644	n:2170000
KS ci ratio: 7.959149e-02	ci left: 1.072140e-03	ci right 1.161458e-03	k: 2422	n:2170000
CRTC1   2170000 perm   2087 sec   (1040 perm/sec)   p_kst 1.116129e-03   p_cons 3.255484e-02   p_joint 4.299539e-04

Joint ci ratio: 1.281017e-01	ci left: 4.018500e-04	ci right 4.572893e-04	k: 935	n:2180000
Cons ci ratio: 1.447637e-02	ci left: 3.230523e-02	ci right 3.277675e-02	k: 70938	n:2180000
KS ci ratio: 7.952601e-02	ci left: 1.069020e-03	ci right 1.158002e-03	k: 2426	n:2180000
CRTC1   2180000 perm   2104 sec   (1036 perm/sec)   p_kst 1.112844e-03   p_cons 3.254037e-02   p_joint 4.288991e-04

Joint ci ratio: 1.278969e-01	ci left: 4.013411e-04	ci right 4.566149e-04	k: 938	n:2190000
Cons ci ratio: 1.444427e-02	ci left: 3.230149e-02	ci right 3.277190e-02	k: 71254	n:2190000
KS ci ratio: 7.942798e-02	ci left: 1.066824e-03	ci right 1.155508e-03	k: 2432	n:2190000
CRTC1   2190000 perm   2121 sec   (1032 perm/sec)   p_kst 1.110502e-03   p_cons 3.253607e-02   p_joint 4.283105e-04

Joint ci ratio: 1.274902e-01	ci left: 4.021570e-04	ci right 4.573537e-04	k: 944	n:2200000
Cons ci ratio: 1.441436e-02	ci left: 3.228917e-02	ci right 3.275842e-02	k: 71551	n:2200000
KS ci ratio: 7.924904e-02	ci left: 1.066876e-03	ci right 1.155355e-03	k: 2443	n:2200000
CRTC1   2200000 perm   2139 sec   (1029 perm/sec)   p_kst 1.110455e-03   p_cons 3.252318e-02   p_joint 4.290909e-04

Joint ci ratio: 1.271542e-01	ci left: 4.025276e-04	ci right 4.576187e-04	k: 949	n:2210000
Cons ci ratio: 1.438297e-02	ci left: 3.228419e-02	ci right 3.275233e-02	k: 71864	n:2210000
KS ci ratio: 7.918439e-02	ci left: 1.063822e-03	ci right 1.151973e-03	k: 2447	n:2210000
CRTC1   2210000 perm   2156 sec   (1025 perm/sec)   p_kst 1.107240e-03   p_cons 3.251765e-02   p_joint 4.294118e-04

Joint ci ratio: 1.268209e-01	ci left: 4.028952e-04	ci right 4.578811e-04	k: 954	n:2220000
Cons ci ratio: 1.435159e-02	ci left: 3.228014e-02	ci right 3.274720e-02	k: 72179	n:2220000
KS ci ratio: 7.900709e-02	ci left: 1.063887e-03	ci right 1.151837e-03	k: 2458	n:2220000
CRTC1   2220000 perm   2174 sec   (1021 perm/sec)   p_kst 1.107207e-03   p_cons 3.251306e-02   p_joint 4.297297e-04

Joint ci ratio: 1.264243e-01	ci left: 4.036938e-04	ci right 4.586036e-04	k: 960	n:2230000
Cons ci ratio: 1.432072e-02	ci left: 3.227480e-02	ci right 3.274077e-02	k: 72491	n:2230000
KS ci ratio: 7.887893e-02	ci left: 1.062633e-03	ci right 1.150330e-03	k: 2466	n:2230000
CRTC1   2230000 perm   2191 sec   (1018 perm/sec)   p_kst 1.105830e-03   p_cons 3.250717e-02   p_joint 4.304933e-04

Joint ci ratio: 1.262275e-01	ci left: 4.031886e-04	ci right 4.579379e-04	k: 963	n:2240000
Cons ci ratio: 1.428821e-02	ci left: 3.227751e-02	ci right 3.274245e-02	k: 72821	n:2240000
KS ci ratio: 7.875140e-02	ci left: 1.061390e-03	ci right 1.148836e-03	k: 2474	n:2240000
CRTC1   2240000 perm   2209 sec   (1014 perm/sec)   p_kst 1.104464e-03   p_cons 3.250938e-02   p_joint 4.299107e-04

Joint ci ratio: 1.260968e-01	ci left: 4.022575e-04	ci right 4.568195e-04	k: 965	n:2250000
Cons ci ratio: 1.425251e-02	ci left: 3.229526e-02	ci right 3.275928e-02	k: 73185	n:2250000
KS ci ratio: 7.849800e-02	ci left: 1.063644e-03	ci right 1.150981e-03	k: 2490	n:2250000
CRTC1   2250000 perm   2227 sec   (1010 perm/sec)   p_kst 1.106667e-03   p_cons 3.252667e-02   p_joint 4.288889e-04

Joint ci ratio: 1.257717e-01	ci left: 4.026203e-04	ci right 4.570802e-04	k: 970	n:2260000
Cons ci ratio: 1.422337e-02	ci left: 3.228507e-02	ci right 3.274799e-02	k: 73486	n:2260000
KS ci ratio: 7.838800e-02	ci left: 1.061974e-03	ci right 1.149047e-03	k: 2497	n:2260000
CRTC1   2260000 perm   2245 sec   (1007 perm/sec)   p_kst 1.104867e-03   p_cons 3.251593e-02   p_joint 4.292035e-04

Joint ci ratio: 1.255779e-01	ci left: 4.021266e-04	ci right 4.564298e-04	k: 973	n:2270000
Cons ci ratio: 1.418845e-02	ci left: 3.230131e-02	ci right 3.276332e-02	k: 73847	n:2270000
KS ci ratio: 7.835680e-02	ci left: 1.058160e-03	ci right 1.144883e-03	k: 2499	n:2270000
CRTC1   2270000 perm   2263 sec   (1003 perm/sec)   p_kst 1.100881e-03   p_cons 3.253172e-02   p_joint 4.286344e-04

Joint ci ratio: 1.253209e-01	ci left: 4.020622e-04	ci right 4.562373e-04	k: 977	n:2280000
Cons ci ratio: 1.415901e-02	ci left: 3.229425e-02	ci right 3.275519e-02	k: 74155	n:2280000
KS ci ratio: 7.815383e-02	ci left: 1.059109e-03	ci right 1.145675e-03	k: 2512	n:2280000
CRTC1   2280000 perm   2281 sec   (1000 perm/sec)   p_kst 1.101754e-03   p_cons 3.252412e-02   p_joint 4.285088e-04

Joint ci ratio: 1.251930e-01	ci left: 4.011525e-04	ci right 4.551457e-04	k: 979	n:2290000
Cons ci ratio: 1.412838e-02	ci left: 3.229334e-02	ci right 3.275326e-02	k: 74477	n:2290000
KS ci ratio: 7.798334e-02	ci left: 1.059194e-03	ci right 1.145569e-03	k: 2523	n:2290000
CRTC1   2290000 perm   2299 sec   (996 perm/sec)   p_kst 1.101747e-03   p_cons 3.252271e-02   p_joint 4.275109e-04

Joint ci ratio: 1.250655e-01	ci left: 4.002507e-04	ci right 4.540636e-04	k: 981	n:2300000
Cons ci ratio: 1.409960e-02	ci left: 3.228507e-02	ci right 3.274393e-02	k: 74782	n:2300000
KS ci ratio: 7.784471e-02	ci left: 1.058425e-03	ci right 1.144578e-03	k: 2532	n:2300000
CRTC1   2300000 perm   2317 sec   (993 perm/sec)   p_kst 1.100870e-03   p_cons 3.251391e-02   p_joint 4.265217e-04

Joint ci ratio: 1.246851e-01	ci left: 4.010343e-04	ci right 4.547765e-04	k: 987	n:2310000
Cons ci ratio: 1.406693e-02	ci left: 3.229500e-02	ci right 3.275293e-02	k: 75129	n:2310000
KS ci ratio: 7.769152e-02	ci left: 1.058088e-03	ci right 1.144036e-03	k: 2542	n:2310000
CRTC1   2310000 perm   2336 sec   (989 perm/sec)   p_kst 1.100433e-03   p_cons 3.252338e-02   p_joint 4.272727e-04

Joint ci ratio: 1.245592e-01	ci left: 4.001409e-04	ci right 4.537052e-04	k: 989	n:2320000
Cons ci ratio: 1.403709e-02	ci left: 3.229324e-02	ci right 3.275017e-02	k: 75449	n:2320000
KS ci ratio: 7.753923e-02	ci left: 1.057754e-03	ci right 1.143499e-03	k: 2552	n:2320000
CRTC1   2320000 perm   2354 sec   (986 perm/sec)   p_kst 1.100000e-03   p_cons 3.252112e-02   p_joint 4.262931e-04

Joint ci ratio: 1.244964e-01	ci left: 3.988393e-04	ci right 4.522005e-04	k: 990	n:2330000
Cons ci ratio: 1.400485e-02	ci left: 3.230305e-02	ci right 3.275906e-02	k: 75796	n:2330000
KS ci ratio: 7.749384e-02	ci left: 1.054477e-03	ci right 1.139904e-03	k: 2555	n:2330000
CRTC1   2330000 perm   2372 sec   (982 perm/sec)   p_kst 1.096567e-03   p_cons 3.253047e-02   p_joint 4.248927e-04

Joint ci ratio: 1.241835e-01	ci left: 3.992052e-04	ci right 4.524712e-04	k: 995	n:2340000
Cons ci ratio: 1.397787e-02	ci left: 3.229020e-02	ci right 3.274514e-02	k: 76090	n:2340000
KS ci ratio: 7.731256e-02	ci left: 1.055000e-03	ci right 1.140260e-03	k: 2567	n:2340000
CRTC1   2340000 perm   2391 sec   (979 perm/sec)   p_kst 1.097009e-03   p_cons 3.251709e-02   p_joint 4.252137e-04

Joint ci ratio: 1.239969e-01	ci left: 3.987434e-04	ci right 4.518620e-04	k: 998	n:2350000
Cons ci ratio: 1.394792e-02	ci left: 3.229146e-02	ci right 3.274544e-02	k: 76417	n:2350000
KS ci ratio: 7.719246e-02	ci left: 1.053849e-03	ci right 1.138878e-03	k: 2575	n:2350000
CRTC1   2350000 perm   2410 sec   (975 perm/sec)   p_kst 1.095745e-03   p_cons 3.251787e-02   p_joint 4.246809e-04

Joint ci ratio: 1.235647e-01	ci left: 3.999281e-04	ci right 4.530052e-04	k: 1005	n:2360000
Cons ci ratio: 1.391733e-02	ci left: 3.229651e-02	ci right 3.274955e-02	k: 76753	n:2360000
KS ci ratio: 7.695376e-02	ci left: 1.056032e-03	ci right 1.140962e-03	k: 2591	n:2360000
CRTC1   2360000 perm   2428 sec   (972 perm/sec)   p_kst 1.097881e-03   p_cons 3.252246e-02   p_joint 4.258475e-04

Joint ci ratio: 1.234421e-01	ci left: 3.990584e-04	ci right 4.519638e-04	k: 1007	n:2370000
Cons ci ratio: 1.388786e-02	ci left: 3.229731e-02	ci right 3.274940e-02	k: 77079	n:2370000
KS ci ratio: 7.683533e-02	ci left: 1.054887e-03	ci right 1.139588e-03	k: 2599	n:2370000
CRTC1   2370000 perm   2447 sec   (969 perm/sec)   p_kst 1.096624e-03   p_cons 3.252278e-02   p_joint 4.248945e-04

Joint ci ratio: 1.230156e-01	ci left: 4.002322e-04	ci right 4.530965e-04	k: 1014	n:2380000
Cons ci ratio: 1.386145e-02	ci left: 3.228513e-02	ci right 3.273618e-02	k: 77374	n:2380000
KS ci ratio: 7.662925e-02	ci left: 1.056224e-03	ci right 1.140795e-03	k: 2613	n:2380000
CRTC1   2380000 perm   2465 sec   (965 perm/sec)   p_kst 1.097899e-03   p_cons 3.251008e-02   p_joint 4.260504e-04

Joint ci ratio: 1.226536e-01	ci left: 4.009910e-04	ci right 4.537883e-04	k: 1020	n:2390000
Cons ci ratio: 1.383207e-02	ci left: 3.228722e-02	ci right 3.273734e-02	k: 77703	n:2390000
KS ci ratio: 7.646852e-02	ci left: 1.056319e-03	ci right 1.140713e-03	k: 2624	n:2390000
CRTC1   2390000 perm   2484 sec   (962 perm/sec)   p_kst 1.097908e-03   p_cons 3.251172e-02   p_joint 4.267782e-04

Joint ci ratio: 1.225337e-01	ci left: 4.001279e-04	ci right 4.527564e-04	k: 1022	n:2400000
Cons ci ratio: 1.380414e-02	ci left: 3.228349e-02	ci right 3.273264e-02	k: 78018	n:2400000
KS ci ratio: 7.629432e-02	ci left: 1.056823e-03	ci right 1.141055e-03	k: 2636	n:2400000
CRTC1   2400000 perm   2503 sec   (959 perm/sec)   p_kst 1.098333e-03   p_cons 3.250750e-02   p_joint 4.258333e-04

Joint ci ratio: 1.221759e-01	ci left: 4.008811e-04	ci right 4.534435e-04	k: 1028	n:2410000
Cons ci ratio: 1.377494e-02	ci left: 3.228640e-02	ci right 3.273464e-02	k: 78349	n:2410000
KS ci ratio: 7.615008e-02	ci left: 1.056508e-03	ci right 1.140549e-03	k: 2646	n:2410000
CRTC1   2410000 perm   2522 sec   (956 perm/sec)   p_kst 1.097925e-03   p_cons 3.250996e-02   p_joint 4.265560e-04

Joint ci ratio: 1.218801e-01	ci left: 4.012276e-04	ci right 4.536989e-04	k: 1033	n:2420000
Cons ci ratio: 1.375052e-02	ci left: 3.226829e-02	ci right 3.271547e-02	k: 78629	n:2420000
KS ci ratio: 7.602098e-02	ci left: 1.055790e-03	ci right 1.139626e-03	k: 2655	n:2420000
CRTC1   2420000 perm   2541 sec   (953 perm/sec)   p_kst 1.097107e-03   p_cons 3.249132e-02   p_joint 4.268595e-04

Joint ci ratio: 1.218213e-01	ci left: 3.999754e-04	ci right 4.522559e-04	k: 1034	n:2430000
Cons ci ratio: 1.372399e-02	ci left: 3.226058e-02	ci right 3.270679e-02	k: 78934	n:2430000
KS ci ratio: 7.590680e-02	ci left: 1.054675e-03	ci right 1.138291e-03	k: 2663	n:2430000
CRTC1   2430000 perm   2560 sec   (949 perm/sec)   p_kst 1.095885e-03   p_cons 3.248313e-02   p_joint 4.255144e-04

Joint ci ratio: 1.213531e-01	ci left: 4.015152e-04	ci right 4.537807e-04	k: 1042	n:2440000
Cons ci ratio: 1.369555e-02	ci left: 3.226233e-02	ci right 3.270763e-02	k: 79262	n:2440000
KS ci ratio: 7.570808e-02	ci left: 1.055982e-03	ci right 1.139472e-03	k: 2677	n:2440000
CRTC1   2440000 perm   2579 sec   (946 perm/sec)   p_kst 1.097131e-03   p_cons 3.248443e-02   p_joint 4.270492e-04

Joint ci ratio: 1.210633e-01	ci left: 4.018553e-04	ci right 4.540312e-04	k: 1047	n:2450000
Cons ci ratio: 1.366863e-02	ci left: 3.225797e-02	ci right 3.270232e-02	k: 79575	n:2450000
KS ci ratio: 7.558121e-02	ci left: 1.055275e-03	ci right 1.138564e-03	k: 2686	n:2450000
CRTC1   2450000 perm   2599 sec   (943 perm/sec)   p_kst 1.096327e-03   p_cons 3.247959e-02   p_joint 4.273469e-04

Joint ci ratio: 1.209480e-01	ci left: 4.010101e-04	ci right 4.530232e-04	k: 1049	n:2460000
Cons ci ratio: 1.363912e-02	ci left: 3.226620e-02	ci right 3.270970e-02	k: 79919	n:2460000
KS ci ratio: 7.544098e-02	ci left: 1.054974e-03	ci right 1.138078e-03	k: 2696	n:2460000
CRTC1   2460000 perm   2619 sec   (939 perm/sec)   p_kst 1.095935e-03   p_cons 3.248740e-02   p_joint 4.264228e-04

Joint ci ratio: 1.212372e-01	ci left: 3.974236e-04	ci right 4.491036e-04	k: 1044	n:2470000
Cons ci ratio: 1.361042e-02	ci left: 3.227154e-02	ci right 3.271417e-02	k: 80256	n:2470000
KS ci ratio: 7.528760e-02	ci left: 1.055072e-03	ci right 1.138007e-03	k: 2707	n:2470000
CRTC1   2470000 perm   2638 sec   (936 perm/sec)   p_kst 1.095951e-03   p_cons 3.249231e-02   p_joint 4.226721e-04

Joint ci ratio: 1.211214e-01	ci left: 3.966031e-04	ci right 4.481236e-04	k: 1046	n:2480000
Cons ci ratio: 1.358356e-02	ci left: 3.226920e-02	ci right 3.271092e-02	k: 80574	n:2480000
KS ci ratio: 7.516283e-02	ci left: 1.054379e-03	ci right 1.137116e-03	k: 2716	n:2480000
CRTC1   2480000 perm   2657 sec   (933 perm/sec)   p_kst 1.095161e-03   p_cons 3.248952e-02   p_joint 4.217742e-04

Joint ci ratio: 1.210637e-01	ci left: 3.953997e-04	ci right 4.467376e-04	k: 1047	n:2490000
Cons ci ratio: 1.355642e-02	ci left: 3.226888e-02	ci right 3.270971e-02	k: 80897	n:2490000
KS ci ratio: 7.508005e-02	ci left: 1.052509e-03	ci right 1.135004e-03	k: 2722	n:2490000
CRTC1   2490000 perm   2677 sec   (930 perm/sec)   p_kst 1.093173e-03   p_cons 3.248876e-02   p_joint 4.204819e-04

Joint ci ratio: 1.210061e-01	ci left: 3.942060e-04	ci right 4.453628e-04	k: 1048	n:2500000
Cons ci ratio: 1.352996e-02	ci left: 3.226618e-02	ci right 3.270610e-02	k: 81214	n:2500000
KS ci ratio: 7.498379e-02	ci left: 1.051046e-03	ci right 1.133317e-03	k: 2729	n:2500000
CRTC1   2500000 perm   2697 sec   (927 perm/sec)   p_kst 1.091600e-03   p_cons 3.248560e-02   p_joint 4.192000e-04

Joint ci ratio: 1.206614e-01	ci left: 3.949536e-04	ci right 4.460511e-04	k: 1054	n:2510000
Cons ci ratio: 1.350442e-02	ci left: 3.225992e-02	ci right 3.269893e-02	k: 81522	n:2510000
KS ci ratio: 7.484685e-02	ci left: 1.050768e-03	ci right 1.132860e-03	k: 2739	n:2510000
CRTC1   2510000 perm   2717 sec   (924 perm/sec)   p_kst 1.091235e-03   p_cons 3.247888e-02   p_joint 4.199203e-04

Joint ci ratio: 1.204333e-01	ci left: 3.949258e-04	ci right 4.459162e-04	k: 1058	n:2520000
Cons ci ratio: 1.347554e-02	ci left: 3.226993e-02	ci right 3.270813e-02	k: 81871	n:2520000
KS ci ratio: 7.466989e-02	ci left: 1.051661e-03	ci right 1.133620e-03	k: 2752	n:2520000
CRTC1   2520000 perm   2737 sec   (921 perm/sec)   p_kst 1.092063e-03   p_cons 3.248849e-02   p_joint 4.198413e-04

Joint ci ratio: 1.199809e-01	ci left: 3.964318e-04	ci right 4.474108e-04	k: 1066	n:2530000
Cons ci ratio: 1.344718e-02	ci left: 3.227829e-02	ci right 3.271567e-02	k: 82216	n:2530000
KS ci ratio: 7.449418e-02	ci left: 1.052546e-03	ci right 1.134373e-03	k: 2765	n:2530000
CRTC1   2530000 perm   2757 sec   (918 perm/sec)   p_kst 1.092885e-03   p_cons 3.249644e-02   p_joint 4.213439e-04

Joint ci ratio: 1.197008e-01	ci left: 3.967806e-04	ci right 4.476768e-04	k: 1071	n:2540000
Cons ci ratio: 1.342069e-02	ci left: 3.227873e-02	ci right 3.271525e-02	k: 82541	n:2540000
KS ci ratio: 7.425287e-02	ci left: 1.055357e-03	ci right 1.137125e-03	k: 2783	n:2540000
CRTC1   2540000 perm   2777 sec   (915 perm/sec)   p_kst 1.095669e-03   p_cons 3.249646e-02   p_joint 4.216535e-04

Joint ci ratio: 1.194781e-01	ci left: 3.967463e-04	ci right 4.475367e-04	k: 1075	n:2550000
Cons ci ratio: 1.339551e-02	ci left: 3.227370e-02	ci right 3.270932e-02	k: 82852	n:2550000
KS ci ratio: 7.413317e-02	ci left: 1.054683e-03	ci right 1.136261e-03	k: 2792	n:2550000
CRTC1   2550000 perm   2797 sec   (912 perm/sec)   p_kst 1.094902e-03   p_cons 3.249098e-02   p_joint 4.215686e-04

Joint ci ratio: 1.191463e-01	ci left: 3.974703e-04	ci right 4.482022e-04	k: 1081	n:2560000
Cons ci ratio: 1.336674e-02	ci left: 3.228623e-02	ci right 3.272108e-02	k: 83208	n:2560000
KS ci ratio: 7.401404e-02	ci left: 1.054013e-03	ci right 1.135403e-03	k: 2801	n:2560000
CRTC1   2560000 perm   2817 sec   (909 perm/sec)   p_kst 1.094141e-03   p_cons 3.250313e-02   p_joint 4.222656e-04

Joint ci ratio: 1.192015e-01	ci left: 3.955462e-04	ci right 4.460575e-04	k: 1080	n:2570000
Cons ci ratio: 1.333997e-02	ci left: 3.229013e-02	ci right 3.272415e-02	k: 83542	n:2570000
KS ci ratio: 7.386918e-02	ci left: 1.054113e-03	ci right 1.135345e-03	k: 2812	n:2570000
CRTC1   2570000 perm   2837 sec   (906 perm/sec)   p_kst 1.094163e-03   p_cons 3.250661e-02   p_joint 4.202335e-04

Joint ci ratio: 1.189268e-01	ci left: 3.958933e-04	ci right 4.463243e-04	k: 1085	n:2580000
Cons ci ratio: 1.331492e-02	ci left: 3.228666e-02	ci right 3.271982e-02	k: 83857	n:2580000
KS ci ratio: 7.373825e-02	ci left: 1.053832e-03	ci right 1.134892e-03	k: 2822	n:2580000
CRTC1   2580000 perm   2857 sec   (903 perm/sec)   p_kst 1.093798e-03   p_cons 3.250271e-02   p_joint 4.205426e-04

Joint ci ratio: 1.186539e-01	ci left: 3.962379e-04	ci right 4.465889e-04	k: 1090	n:2590000
Cons ci ratio: 1.329091e-02	ci left: 3.227899e-02	ci right 3.271125e-02	k: 84161	n:2590000
KS ci ratio: 7.356902e-02	ci left: 1.054690e-03	ci right 1.135621e-03	k: 2835	n:2590000
CRTC1   2590000 perm   2877 sec   (900 perm/sec)   p_kst 1.094595e-03   p_cons 3.249459e-02   p_joint 4.208494e-04

Joint ci ratio: 1.191467e-01	ci left: 3.913553e-04	ci right 4.413068e-04	k: 1081	n:2600000
Cons ci ratio: 1.326597e-02	ci left: 3.227635e-02	ci right 3.270777e-02	k: 84478	n:2600000
KS ci ratio: 7.351729e-02	ci left: 1.052143e-03	ci right 1.132821e-03	k: 2839	n:2600000
CRTC1   2600000 perm   2897 sec   (897 perm/sec)   p_kst 1.091923e-03   p_cons 3.249154e-02   p_joint 4.157692e-04

Joint ci ratio: 1.221779e-01	ci left: 3.701619e-04	ci right 4.186973e-04	k: 1028	n:2610000
Cons ci ratio: 1.324084e-02	ci left: 3.227527e-02	ci right 3.270584e-02	k: 84799	n:2610000
KS ci ratio: 7.341400e-02	ci left: 1.051121e-03	ci right 1.131602e-03	k: 2847	n:2610000
CRTC1   2610000 perm   2918 sec   (895 perm/sec)   p_kst 1.090805e-03   p_cons 3.249004e-02   p_joint 3.938697e-04

Joint ci ratio: 1.217644e-01	ci left: 3.713393e-04	ci right 4.198524e-04	k: 1035	n:2620000
Cons ci ratio: 1.321410e-02	ci left: 3.228257e-02	ci right 3.271236e-02	k: 85142	n:2620000
KS ci ratio: 7.323418e-02	ci left: 1.052355e-03	ci right 1.132724e-03	k: 2861	n:2620000
CRTC1   2620000 perm   2938 sec   (892 perm/sec)   p_kst 1.091985e-03   p_cons 3.249695e-02   p_joint 3.950382e-04

Joint ci ratio: 1.215300e-01	ci left: 3.714020e-04	ci right 4.198232e-04	k: 1039	n:2630000
Cons ci ratio: 1.318831e-02	ci left: 3.228602e-02	ci right 3.271501e-02	k: 85475	n:2630000
KS ci ratio: 7.303026e-02	ci left: 1.054326e-03	ci right 1.134612e-03	k: 2877	n:2630000
CRTC1   2630000 perm   2959 sec   (889 perm/sec)   p_kst 1.093916e-03   p_cons 3.250000e-02   p_joint 3.950570e-04

Joint ci ratio: 1.214133e-01	ci left: 3.707297e-04	ci right 4.190136e-04	k: 1041	n:2640000
Cons ci ratio: 1.316292e-02	ci left: 3.228831e-02	ci right 3.271650e-02	k: 85805	n:2640000
KS ci ratio: 7.294166e-02	ci left: 1.052935e-03	ci right 1.133014e-03	k: 2884	n:2640000
CRTC1   2640000 perm   2980 sec   (886 perm/sec)   p_kst 1.092424e-03   p_cons 3.250189e-02   p_joint 3.943182e-04

Joint ci ratio: 1.211231e-01	ci left: 3.711603e-04	ci right 4.193764e-04	k: 1046	n:2650000
Cons ci ratio: 1.313845e-02	ci left: 3.228682e-02	ci right 3.271420e-02	k: 86125	n:2650000
KS ci ratio: 7.274016e-02	ci left: 1.054890e-03	ci right 1.134886e-03	k: 2900	n:2650000
CRTC1   2650000 perm   3001 sec   (883 perm/sec)   p_kst 1.094340e-03   p_cons 3.250000e-02   p_joint 3.947170e-04

Joint ci ratio: 1.209499e-01	ci left: 3.708586e-04	ci right 4.189617e-04	k: 1049	n:2660000
Cons ci ratio: 1.311295e-02	ci left: 3.229097e-02	ci right 3.271756e-02	k: 86460	n:2660000
KS ci ratio: 7.262762e-02	ci left: 1.054246e-03	ci right 1.134065e-03	k: 2909	n:2660000
CRTC1   2660000 perm   3022 sec   (880 perm/sec)   p_kst 1.093609e-03   p_cons 3.250376e-02   p_joint 3.943609e-04

Joint ci ratio: 1.207775e-01	ci left: 3.705593e-04	ci right 4.185501e-04	k: 1052	n:2670000
Cons ci ratio: 1.309103e-02	ci left: 3.227866e-02	ci right 3.270437e-02	k: 86751	n:2670000
KS ci ratio: 7.252803e-02	ci left: 1.053239e-03	ci right 1.132868e-03	k: 2917	n:2670000
CRTC1   2670000 perm   3043 sec   (877 perm/sec)   p_kst 1.092509e-03   p_cons 3.249101e-02   p_joint 3.940075e-04

Joint ci ratio: 1.206630e-01	ci left: 3.699003e-04	ci right 4.177572e-04	k: 1054	n:2680000
Cons ci ratio: 1.306479e-02	ci left: 3.228765e-02	ci right 3.271262e-02	k: 87099	n:2680000
KS ci ratio: 7.239171e-02	ci left: 1.053339e-03	ci right 1.132820e-03	k: 2928	n:2680000
CRTC1   2680000 perm   3064 sec   (875 perm/sec)   p_kst 1.092537e-03   p_cons 3.249963e-02   p_joint 3.932836e-04

Joint ci ratio: 1.208351e-01	ci left: 3.674436e-04	ci right 4.150553e-04	k: 1051	n:2690000
Cons ci ratio: 1.304326e-02	ci left: 3.227470e-02	ci right 3.269880e-02	k: 87388	n:2690000
KS ci ratio: 7.224386e-02	ci left: 1.053804e-03	ci right 1.133150e-03	k: 2940	n:2690000
CRTC1   2690000 perm   3084 sec   (872 perm/sec)   p_kst 1.092937e-03   p_cons 3.248625e-02   p_joint 3.907063e-04

Joint ci ratio: 1.216477e-01	ci left: 3.610547e-04	ci right 4.081758e-04	k: 1037	n:2700000
Cons ci ratio: 1.301892e-02	ci left: 3.227588e-02	ci right 3.269919e-02	k: 87715	n:2700000
KS ci ratio: 7.210913e-02	ci left: 1.053902e-03	ci right 1.133101e-03	k: 2951	n:2700000
CRTC1   2700000 perm   3105 sec   (869 perm/sec)   p_kst 1.092963e-03   p_cons 3.248704e-02   p_joint 3.840741e-04

Joint ci ratio: 1.215307e-01	ci left: 3.604380e-04	ci right 4.074300e-04	k: 1039	n:2710000
Cons ci ratio: 1.299456e-02	ci left: 3.227779e-02	ci right 3.270033e-02	k: 88044	n:2710000
KS ci ratio: 7.198732e-02	ci left: 1.053636e-03	ci right 1.132676e-03	k: 2961	n:2710000
CRTC1   2710000 perm   3128 sec   (866 perm/sec)   p_kst 1.092620e-03   p_cons 3.248856e-02   p_joint 3.833948e-04

Joint ci ratio: 1.212976e-01	ci left: 3.605388e-04	ci right 4.074474e-04	k: 1043	n:2720000
Cons ci ratio: 1.297140e-02	ci left: 3.227456e-02	ci right 3.269629e-02	k: 88359	n:2720000
KS ci ratio: 7.180568e-02	ci left: 1.055178e-03	ci right 1.134126e-03	k: 2976	n:2720000
CRTC1   2720000 perm   3148 sec   (864 perm/sec)   p_kst 1.094118e-03   p_cons 3.248493e-02   p_joint 3.834559e-04

Joint ci ratio: 1.210082e-01	ci left: 3.609941e-04	ci right 4.078419e-04	k: 1048	n:2730000
Cons ci ratio: 1.294942e-02	ci left: 3.226623e-02	ci right 3.268714e-02	k: 88660	n:2730000
KS ci ratio: 7.167338e-02	ci left: 1.055270e-03	ci right 1.134073e-03	k: 2987	n:2730000
CRTC1   2730000 perm   3171 sec   (861 perm/sec)   p_kst 1.094139e-03   p_cons 3.247619e-02   p_joint 3.838828e-04

Joint ci ratio: 1.205493e-01	ci left: 3.625081e-04	ci right 4.093612e-04	k: 1056	n:2740000
Cons ci ratio: 1.292590e-02	ci left: 3.226597e-02	ci right 3.268611e-02	k: 88983	n:2740000
KS ci ratio: 7.154181e-02	ci left: 1.055361e-03	ci right 1.134020e-03	k: 2998	n:2740000
CRTC1   2740000 perm   3192 sec   (858 perm/sec)   p_kst 1.094161e-03   p_cons 3.247555e-02   p_joint 3.854015e-04

Joint ci ratio: 1.201520e-01	ci left: 3.636588e-04	ci right 4.104947e-04	k: 1063	n:2750000
Cons ci ratio: 1.290214e-02	ci left: 3.226753e-02	ci right 3.268691e-02	k: 89311	n:2750000
KS ci ratio: 7.137537e-02	ci left: 1.056524e-03	ci right 1.135078e-03	k: 3012	n:2750000
CRTC1   2750000 perm   3214 sec   (856 perm/sec)   p_kst 1.095273e-03   p_cons 3.247673e-02   p_joint 3.865455e-04

Joint ci ratio: 1.199268e-01	ci left: 3.637469e-04	ci right 4.105002e-04	k: 1067	n:2760000
Cons ci ratio: 1.287761e-02	ci left: 3.227341e-02	ci right 3.269206e-02	k: 89651	n:2760000
KS ci ratio: 7.125723e-02	ci left: 1.056254e-03	ci right 1.134654e-03	k: 3022	n:2760000
CRTC1   2760000 perm   3236 sec   (853 perm/sec)   p_kst 1.094928e-03   p_cons 3.248225e-02   p_joint 3.865942e-04

Joint ci ratio: 1.207784e-01	ci left: 3.571815e-04	ci right 4.034402e-04	k: 1052	n:2770000
Cons ci ratio: 1.285448e-02	ci left: 3.227313e-02	ci right 3.269102e-02	k: 89974	n:2770000
KS ci ratio: 7.116317e-02	ci left: 1.055278e-03	ci right 1.133497e-03	k: 3030	n:2770000
CRTC1   2770000 perm   3258 sec   (850 perm/sec)   p_kst 1.093863e-03   p_cons 3.248159e-02   p_joint 3.797834e-04

Joint ci ratio: 1.204357e-01	ci left: 3.579899e-04	ci right 4.042123e-04	k: 1058	n:2780000
Cons ci ratio: 1.282891e-02	ci left: 3.228541e-02	ci right 3.270262e-02	k: 90332	n:2780000
KS ci ratio: 7.098768e-02	ci left: 1.056782e-03	ci right 1.134911e-03	k: 3045	n:2780000
CRTC1   2780000 perm   3279 sec   (848 perm/sec)   p_kst 1.095324e-03   p_cons 3.249353e-02   p_joint 3.805755e-04

Joint ci ratio: 1.202089e-01	ci left: 3.580973e-04	ci right 4.042403e-04	k: 1062	n:2790000
Cons ci ratio: 1.280465e-02	ci left: 3.229188e-02	ci right 3.270838e-02	k: 90674	n:2790000
KS ci ratio: 7.083665e-02	ci left: 1.057571e-03	ci right 1.135585e-03	k: 3058	n:2790000
CRTC1   2790000 perm   3301 sec   (845 perm/sec)   p_kst 1.096057e-03   p_cons 3.249964e-02   p_joint 3.806452e-04

Joint ci ratio: 1.197590e-01	ci left: 3.595898e-04	ci right 4.057395e-04	k: 1070	n:2800000
Cons ci ratio: 1.278111e-02	ci left: 3.229545e-02	ci right 3.271123e-02	k: 91008	n:2800000
KS ci ratio: 7.073270e-02	ci left: 1.056951e-03	ci right 1.134801e-03	k: 3067	n:2800000
CRTC1   2800000 perm   3324 sec   (842 perm/sec)   p_kst 1.095357e-03   p_cons 3.250286e-02   p_joint 3.821429e-04

Joint ci ratio: 1.195916e-01	ci left: 3.593458e-04	ci right 4.053951e-04	k: 1073	n:2810000
Cons ci ratio: 1.275907e-02	ci left: 3.229226e-02	ci right 3.270728e-02	k: 91323	n:2810000
KS ci ratio: 7.066370e-02	ci left: 1.055287e-03	ci right 1.132936e-03	k: 3073	n:2810000
CRTC1   2810000 perm   3346 sec   (840 perm/sec)   p_kst 1.093594e-03   p_cons 3.249929e-02   p_joint 3.818505e-04

Joint ci ratio: 1.193696e-01	ci left: 3.594475e-04	ci right 4.054183e-04	k: 1077	n:2820000
Cons ci ratio: 1.273349e-02	ci left: 3.230713e-02	ci right 3.272149e-02	k: 91689	n:2820000
KS ci ratio: 7.051473e-02	ci left: 1.056073e-03	ci right 1.133609e-03	k: 3086	n:2820000
CRTC1   2820000 perm   3368 sec   (837 perm/sec)   p_kst 1.094326e-03   p_cons 3.251383e-02   p_joint 3.819149e-04

Joint ci ratio: 1.192590e-01	ci left: 3.588630e-04	ci right 4.047136e-04	k: 1079	n:2830000
Cons ci ratio: 1.271276e-02	ci left: 3.229864e-02	ci right 3.271221e-02	k: 91989	n:2830000
KS ci ratio: 7.041219e-02	ci left: 1.055466e-03	ci right 1.132840e-03	k: 3095	n:2830000
CRTC1   2830000 perm   3389 sec   (835 perm/sec)   p_kst 1.093640e-03   p_cons 3.250495e-02   p_joint 3.812721e-04

Joint ci ratio: 1.189291e-01	ci left: 3.596492e-04	ci right 4.054641e-04	k: 1085	n:2840000
Cons ci ratio: 1.269037e-02	ci left: 3.229898e-02	ci right 3.271183e-02	k: 92314	n:2840000
KS ci ratio: 7.023088e-02	ci left: 1.057284e-03	ci right 1.134584e-03	k: 3111	n:2840000
CRTC1   2840000 perm   3411 sec   (833 perm/sec)   p_kst 1.095423e-03   p_cons 3.250493e-02   p_joint 3.820423e-04

Joint ci ratio: 1.185476e-01	ci left: 3.607705e-04	ci right 4.065705e-04	k: 1092	n:2850000
Cons ci ratio: 1.266780e-02	ci left: 3.230073e-02	ci right 3.271286e-02	k: 92643	n:2850000
KS ci ratio: 7.002856e-02	ci left: 1.059780e-03	ci right 1.137029e-03	k: 3129	n:2850000
CRTC1   2850000 perm   3433 sec   (830 perm/sec)   p_kst 1.097895e-03   p_cons 3.250632e-02   p_joint 3.831579e-04

Joint ci ratio: 1.183312e-01	ci left: 3.608662e-04	ci right 4.065889e-04	k: 1096	n:2860000
Cons ci ratio: 1.264529e-02	ci left: 3.230281e-02	ci right 3.271422e-02	k: 92973	n:2860000
KS ci ratio: 6.993928e-02	ci left: 1.058822e-03	ci right 1.135900e-03	k: 3137	n:2860000
CRTC1   2860000 perm   3456 sec   (828 perm/sec)   p_kst 1.096853e-03   p_cons 3.250804e-02   p_joint 3.832168e-04

Joint ci ratio: 1.182774e-01	ci left: 3.599469e-04	ci right 4.055310e-04	k: 1097	n:2870000
Cons ci ratio: 1.262591e-02	ci left: 3.228994e-02	ci right 3.270056e-02	k: 93260	n:2870000
KS ci ratio: 6.982811e-02	ci left: 1.058556e-03	ci right 1.135487e-03	k: 3147	n:2870000
CRTC1   2870000 perm   3478 sec   (825 perm/sec)   p_kst 1.096516e-03   p_cons 3.249477e-02   p_joint 3.822300e-04

Joint ci ratio: 1.180625e-01	ci left: 3.600449e-04	ci right 4.055528e-04	k: 1101	n:2880000
Cons ci ratio: 1.260257e-02	ci left: 3.229723e-02	ci right 3.270718e-02	k: 93605	n:2880000
KS ci ratio: 6.962925e-02	ci left: 1.061022e-03	ci right 1.137903e-03	k: 3165	n:2880000
CRTC1   2880000 perm   3500 sec   (823 perm/sec)   p_kst 1.098958e-03   p_cons 3.250174e-02   p_joint 3.822917e-04

Joint ci ratio: 1.181699e-01	ci left: 3.581275e-04	ci right 4.034370e-04	k: 1099	n:2890000
Cons ci ratio: 1.257888e-02	ci left: 3.230689e-02	ci right 3.271619e-02	k: 93957	n:2890000
KS ci ratio: 6.955245e-02	ci left: 1.059731e-03	ci right 1.136430e-03	k: 3172	n:2890000
CRTC1   2890000 perm   3522 sec   (821 perm/sec)   p_kst 1.097578e-03   p_cons 3.251107e-02   p_joint 3.802768e-04

Joint ci ratio: 1.179557e-01	ci left: 3.582312e-04	ci right 4.034659e-04	k: 1103	n:2900000
Cons ci ratio: 1.255608e-02	ci left: 3.231271e-02	ci right 3.272133e-02	k: 94298	n:2900000
KS ci ratio: 6.942129e-02	ci left: 1.060142e-03	ci right 1.136721e-03	k: 3184	n:2900000
CRTC1   2900000 perm   3545 sec   (818 perm/sec)   p_kst 1.097931e-03   p_cons 3.251655e-02   p_joint 3.803448e-04

Joint ci ratio: 1.177425e-01	ci left: 3.583342e-04	ci right 4.034945e-04	k: 1107	n:2910000
Cons ci ratio: 1.253368e-02	ci left: 3.231711e-02	ci right 3.272505e-02	k: 94635	n:2910000
KS ci ratio: 6.928002e-02	ci left: 1.060889e-03	ci right 1.137360e-03	k: 3197	n:2910000
CRTC1   2910000 perm   3567 sec   (816 perm/sec)   p_kst 1.098625e-03   p_cons 3.252062e-02   p_joint 3.804124e-04

Joint ci ratio: 1.173197e-01	ci left: 3.597662e-04	ci right 4.049329e-04	k: 1115	n:2920000
Cons ci ratio: 1.251140e-02	ci left: 3.232149e-02	ci right 3.272875e-02	k: 94972	n:2920000
KS ci ratio: 6.913961e-02	ci left: 1.061631e-03	ci right 1.137994e-03	k: 3210	n:2920000
CRTC1   2920000 perm   3590 sec   (813 perm/sec)   p_kst 1.099315e-03   p_cons 3.252466e-02   p_joint 3.818493e-04

Joint ci ratio: 1.170577e-01	ci left: 3.601948e-04	ci right 4.053073e-04	k: 1120	n:2930000
Cons ci ratio: 1.249032e-02	ci left: 3.232039e-02	ci right 3.272695e-02	k: 95293	n:2930000
KS ci ratio: 6.898934e-02	ci left: 1.062703e-03	ci right 1.138971e-03	k: 3224	n:2930000
CRTC1   2930000 perm   3612 sec   (811 perm/sec)   p_kst 1.100341e-03   p_cons 3.252321e-02   p_joint 3.822526e-04

Joint ci ratio: 1.167457e-01	ci left: 3.609508e-04	ci right 4.060292e-04	k: 1126	n:2940000
Cons ci ratio: 1.246617e-02	ci left: 3.233524e-02	ci right 3.274119e-02	k: 95661	n:2940000
KS ci ratio: 6.893599e-02	ci left: 1.060760e-03	ci right 1.136827e-03	k: 3229	n:2940000
CRTC1   2940000 perm   3635 sec   (809 perm/sec)   p_kst 1.098299e-03   p_cons 3.253776e-02   p_joint 3.829932e-04

Joint ci ratio: 1.166423e-01	ci left: 3.603854e-04	ci right 4.053506e-04	k: 1128	n:2950000
Cons ci ratio: 1.244566e-02	ci left: 3.233241e-02	ci right 3.273766e-02	k: 95977	n:2950000
KS ci ratio: 6.882954e-02	ci left: 1.060496e-03	ci right 1.136421e-03	k: 3239	n:2950000
CRTC1   2950000 perm   3658 sec   (806 perm/sec)   p_kst 1.097966e-03   p_cons 3.253458e-02   p_joint 3.823729e-04

Joint ci ratio: 1.165907e-01	ci left: 3.594959e-04	ci right 4.043288e-04	k: 1129	n:2960000
Cons ci ratio: 1.242524e-02	ci left: 3.232960e-02	ci right 3.273415e-02	k: 96293	n:2960000
KS ci ratio: 6.871300e-02	ci left: 1.060565e-03	ci right 1.136362e-03	k: 3250	n:2960000
CRTC1   2960000 perm   3681 sec   (804 perm/sec)   p_kst 1.097973e-03   p_cons 3.253142e-02   p_joint 3.814189e-04

Joint ci ratio: 1.164362e-01	ci left: 3.592661e-04	ci right 4.040070e-04	k: 1132	n:2970000
Cons ci ratio: 1.240512e-02	ci left: 3.232581e-02	ci right 3.272965e-02	k: 96606	n:2970000
KS ci ratio: 6.862864e-02	ci left: 1.059642e-03	ci right 1.135276e-03	k: 3258	n:2970000
CRTC1   2970000 perm   3705 sec   (802 perm/sec)   p_kst 1.096970e-03   p_cons 3.252727e-02   p_joint 3.811448e-04

Joint ci ratio: 1.163336e-01	ci left: 3.587121e-04	ci right 4.033419e-04	k: 1134	n:2980000
Cons ci ratio: 1.238319e-02	ci left: 3.233174e-02	ci right 3.273494e-02	k: 96948	n:2980000
KS ci ratio: 6.852360e-02	ci left: 1.059384e-03	ci right 1.134879e-03	k: 3268	n:2980000
CRTC1   2980000 perm   3728 sec   (799 perm/sec)   p_kst 1.096644e-03   p_cons 3.253289e-02   p_joint 3.805369e-04

Joint ci ratio: 1.162313e-01	ci left: 3.581618e-04	ci right 4.026813e-04	k: 1136	n:2990000
Cons ci ratio: 1.236156e-02	ci left: 3.233664e-02	ci right 3.273918e-02	k: 97287	n:2990000
KS ci ratio: 6.840860e-02	ci left: 1.059457e-03	ci right 1.134826e-03	k: 3279	n:2990000
CRTC1   2990000 perm   3751 sec   (797 perm/sec)   p_kst 1.096656e-03   p_cons 3.253746e-02   p_joint 3.799331e-04

Joint ci ratio: 9.402868e-02	ci left: 5.517702e-04	ci right 6.065346e-04	k: 1736	n:3000000
Cons ci ratio: 1.320250e-02	ci left: 2.835851e-02	ci right 2.873573e-02	k: 85640	n:3000000
KS ci ratio: 6.830457e-02	ci left: 1.059202e-03	ci right 1.134433e-03	k: 3289	n:3000000
CRTC1   3000000 perm   3775 sec   (795 perm/sec)   p_kst 1.096333e-03   p_cons 2.854667e-02   p_joint 5.786667e-04

Outputting figure to mutsig2_images.part000000000043/CRTC1.6_2013_3000000_0.0010963_0.028547_0.00057867.png
                gene_name: CRTC1
               theta_stop: 0.094 
                    nperm: 3000000 
                     p_ks: 0.0011 
        ci_ks_bounds_left: 0.0011 
       ci_ks_bounds_right: 0.0011 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.00058 
     ci_joint_bounds_left: 0.00055 
    ci_joint_bounds_right: 0.00061 

Current progress: 27 percent done.
CRHR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.800553e-02	ci left: 8.182217e-01	ci right 8.331881e-01	k: 8258	n:10000
Cons ci ratio: 3.450369e-02	ci left: 5.536120e-01	ci right 5.731511e-01	k: 5634	n:10000
KS ci ratio: 2.972988e-02	ci left: 6.252749e-01	ci right 6.442466e-01	k: 6348	n:10000
CRHR2   10000 perm   1 sec   (6926 perm/sec)   p_kst 6.348000e-01   p_cons 5.634000e-01   p_joint 8.258000e-01

Outputting figure to mutsig2_images.part000000000043/CRHR2.5_1284_10000_0.6348_0.5634_0.8258.png
                gene_name: CRHR2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 29 percent done.
CRTAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
Cons ci ratio: 2.515839e-01	ci left: 2.071417e-02	ci right 2.676765e-02	k: 236	n:10000
KS ci ratio: 1.600840e-02	ci left: 8.500867e-01	ci right 8.639046e-01	k: 8571	n:10000
CRTAC1   10000 perm   2 sec   (6177 perm/sec)   p_kst 8.571000e-01   p_cons 2.360000e-02   p_joint 1.789000e-01

Joint ci ratio: 7.579852e-02	ci left: 1.134614e-01	ci right 1.224500e-01	k: 2358	n:20000
Cons ci ratio: 1.845928e-01	ci left: 2.001183e-02	ci right 2.412875e-02	k: 440	n:20000
KS ci ratio: 1.031421e-02	ci left: 8.737905e-01	ci right 8.828992e-01	k: 17568	n:20000
CRTAC1   20000 perm   4 sec   (5579 perm/sec)   p_kst 8.784000e-01   p_cons 2.200000e-02   p_joint 1.179000e-01

Joint ci ratio: 7.237779e-02	ci left: 8.583391e-02	ci right 9.231260e-02	k: 2671	n:30000
Cons ci ratio: 1.497398e-01	ci left: 2.065885e-02	ci right 2.403454e-02	k: 669	n:30000
KS ci ratio: 8.369917e-03	ci left: 8.759653e-01	ci right 8.833610e-01	k: 26391	n:30000
CRTAC1   30000 perm   6 sec   (5338 perm/sec)   p_kst 8.797000e-01   p_cons 2.230000e-02   p_joint 8.903333e-02

Joint ci ratio: 6.580894e-02	ci left: 7.878746e-02	ci right 8.417349e-02	k: 3258	n:40000
Cons ci ratio: 1.300767e-01	ci left: 2.075422e-02	ci right 2.366572e-02	k: 887	n:40000
KS ci ratio: 7.288610e-03	ci left: 8.752836e-01	ci right 8.817113e-01	k: 35141	n:40000
CRTAC1   40000 perm   8 sec   (5041 perm/sec)   p_kst 8.785250e-01   p_cons 2.217500e-02   p_joint 8.145000e-02

Joint ci ratio: 6.246139e-02	ci left: 7.073468e-02	ci right 7.531504e-02	k: 3650	n:50000
Cons ci ratio: 1.161306e-01	ci left: 2.098468e-02	ci right 2.359120e-02	k: 1113	n:50000
KS ci ratio: 6.536916e-03	ci left: 8.750387e-01	ci right 8.807973e-01	k: 43897	n:50000
CRTAC1   50000 perm   10 sec   (4952 perm/sec)   p_kst 8.779400e-01   p_cons 2.226000e-02   p_joint 7.300000e-02

Joint ci ratio: 4.049433e-02	ci left: 1.323412e-01	ci right 1.378275e-01	k: 8104	n:60000
Cons ci ratio: 1.025651e-01	ci left: 2.254636e-02	ci right 2.500000e-02	k: 1425	n:60000
KS ci ratio: 5.979100e-03	ci left: 8.748668e-01	ci right 8.801299e-01	k: 52651	n:60000
CRTAC1   60000 perm   13 sec   (4712 perm/sec)   p_kst 8.775167e-01   p_cons 2.375000e-02   p_joint 1.350667e-01

Joint ci ratio: 3.944490e-02	ci left: 1.211987e-01	ci right 1.260897e-01	k: 8654	n:70000
Cons ci ratio: 9.474328e-02	ci left: 2.273928e-02	ci right 2.501470e-02	k: 1670	n:70000
KS ci ratio: 5.638486e-03	ci left: 8.710149e-01	ci right 8.759541e-01	k: 61145	n:70000
CRTAC1   70000 perm   15 sec   (4662 perm/sec)   p_kst 8.735000e-01   p_cons 2.385714e-02   p_joint 1.236286e-01

Outputting figure to mutsig2_images.part000000000043/CRTAC1.5_2046_70000_0.8735_0.023857_0.12363.png
                gene_name: CRTAC1
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 31 percent done.
CRTAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.005892e-02	ci left: 7.844174e-01	ci right 8.004119e-01	k: 7925	n:10000
Cons ci ratio: 1.465614e-02	ci left: 8.708117e-01	ci right 8.837677e-01	k: 8774	n:10000
KS ci ratio: 2.528895e-02	ci left: 6.970623e-01	ci right 7.150175e-01	k: 7061	n:10000
CRTAM   10000 perm   2 sec   (6140 perm/sec)   p_kst 7.061000e-01   p_cons 8.774000e-01   p_joint 7.925000e-01

Outputting figure to mutsig2_images.part000000000043/CRTAM.5_1222_10000_0.7061_0.8774_0.7925.png
                gene_name: CRTAM
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 33 percent done.
CRY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.981570e-02	ci left: 1.527663e-01	ci right 1.672324e-01	k: 1599	n:10000
Cons ci ratio: 1.407264e-01	ci left: 6.691220e-02	ci right 7.713880e-02	k: 719	n:10000
KS ci ratio: 4.860600e-02	ci left: 3.844050e-01	ci right 4.036568e-01	k: 3940	n:10000
CRY1   10000 perm   2 sec   (6438 perm/sec)   p_kst 3.940000e-01   p_cons 7.190000e-02   p_joint 1.599000e-01

Joint ci ratio: 6.427714e-02	ci left: 1.517365e-01	ci right 1.618635e-01	k: 3135	n:20000
Cons ci ratio: 9.848272e-02	ci left: 6.977402e-02	ci right 7.705059e-02	k: 1467	n:20000
KS ci ratio: 3.412593e-02	ci left: 3.906581e-01	ci right 4.042717e-01	k: 7949	n:20000
CRY1   20000 perm   4 sec   (5692 perm/sec)   p_kst 3.974500e-01   p_cons 7.335000e-02   p_joint 1.567500e-01

Outputting figure to mutsig2_images.part000000000043/CRY1.5_1809_20000_0.39745_0.07335_0.15675.png
                gene_name: CRY1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 35 percent done.
CRYBA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.317481e-02	ci left: 7.322943e-01	ci right 7.495652e-01	k: 7410	n:10000
Cons ci ratio: 4.475820e-02	ci left: 4.242563e-01	ci right 4.437821e-01	k: 4340	n:10000
KS ci ratio: 3.265380e-02	ci left: 5.805862e-01	ci right 5.999612e-01	k: 5903	n:10000
CRYBA4   10000 perm   1 sec   (6976 perm/sec)   p_kst 5.903000e-01   p_cons 4.340000e-01   p_joint 7.410000e-01

Outputting figure to mutsig2_images.part000000000043/CRYBA4.5_611_10000_0.5903_0.434_0.741.png
                gene_name: CRYBA4
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 37 percent done.
CRYL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.423380e-02	ci left: 4.300402e-01	ci right 4.495949e-01	k: 4398	n:10000
Cons ci ratio: 3.902208e-02	ci left: 4.923508e-01	ci right 5.120479e-01	k: 5022	n:10000
KS ci ratio: 1.141388e-01	ci left: 9.944712e-02	ci right 1.115838e-01	k: 1054	n:10000
CRYL1   10000 perm   1 sec   (7135 perm/sec)   p_kst 1.054000e-01   p_cons 5.022000e-01   p_joint 4.398000e-01

Joint ci ratio: 6.289135e-02	ci left: 1.575103e-01	ci right 1.677880e-01	k: 3252	n:20000
Cons ci ratio: 2.741606e-02	ci left: 4.984955e-01	ci right 5.124029e-01	k: 10109	n:20000
KS ci ratio: 7.896375e-02	ci left: 1.053517e-01	ci right 1.140622e-01	k: 2193	n:20000
CRYL1   20000 perm   3 sec   (6324 perm/sec)   p_kst 1.096500e-01   p_cons 5.054500e-01   p_joint 1.626000e-01

Outputting figure to mutsig2_images.part000000000043/CRYL1.5_992_20000_0.10965_0.50545_0.1626.png
                gene_name: CRYL1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 39 percent done.
CPVL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.483445e-02	ci left: 5.489020e-01	ci right 5.684638e-01	k: 5587	n:10000
Cons ci ratio: 1.268989e-02	ci left: 8.992899e-01	ci right 9.108729e-01	k: 9052	n:10000
KS ci ratio: 4.405475e-02	ci left: 4.320349e-01	ci right 4.515990e-01	k: 4418	n:10000
CPVL   10000 perm   2 sec   (6136 perm/sec)   p_kst 4.418000e-01   p_cons 9.052000e-01   p_joint 5.587000e-01

Outputting figure to mutsig2_images.part000000000043/CPVL.4_1479_10000_0.4418_0.9052_0.5587.png
                gene_name: CPVL
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 41 percent done.
CREB3L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.204869e-02	ci left: 4.550858e-01	ci right 4.747347e-01	k: 4649	n:10000
Cons ci ratio: 7.568707e-02	ci left: 2.034324e-01	ci right 2.195360e-01	k: 2114	n:10000
KS ci ratio: 5.809187e-03	ci left: 9.755703e-01	ci right 9.813463e-01	k: 9786	n:10000
CREB3L2   10000 perm   2 sec   (6653 perm/sec)   p_kst 9.786000e-01   p_cons 2.114000e-01   p_joint 4.649000e-01

Outputting figure to mutsig2_images.part000000000043/CREB3L2.4_1611_10000_0.9786_0.2114_0.4649.png
                gene_name: CREB3L2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 43 percent done.
CREB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.143206e-01	ci left: 9.915477e-02	ci right 1.112763e-01	k: 1051	n:10000
Cons ci ratio: 4.910833e-02	ci left: 3.795277e-01	ci right 3.987369e-01	k: 3891	n:10000
KS ci ratio: 1.576830e-01	ci left: 5.359424e-02	ci right 6.286520e-02	k: 581	n:10000
CREB5   10000 perm   1 sec   (6757 perm/sec)   p_kst 5.810000e-02   p_cons 3.891000e-01   p_joint 1.051000e-01

Joint ci ratio: 1.083252e-01	ci left: 5.811191e-02	ci right 6.481629e-02	k: 1228	n:20000
Cons ci ratio: 3.501851e-02	ci left: 3.783979e-01	ci right 3.919355e-01	k: 7703	n:20000
KS ci ratio: 1.095169e-01	ci left: 5.689394e-02	ci right 6.353464e-02	k: 1203	n:20000
CREB5   20000 perm   3 sec   (6039 perm/sec)   p_kst 6.015000e-02   p_cons 3.851500e-01   p_joint 6.140000e-02

Joint ci ratio: 6.485092e-02	ci left: 1.050349e-01	ci right 1.121078e-01	k: 3256	n:30000
Cons ci ratio: 2.869330e-02	ci left: 3.779926e-01	ci right 3.890299e-01	k: 11505	n:30000
KS ci ratio: 8.843500e-02	ci left: 5.874203e-02	ci right 6.420994e-02	k: 1843	n:30000
CREB5   30000 perm   5 sec   (5761 perm/sec)   p_kst 6.143333e-02   p_cons 3.835000e-01   p_joint 1.085333e-01

Outputting figure to mutsig2_images.part000000000043/CREB5.4_1622_30000_0.061433_0.3835_0.10853.png
                gene_name: CREB5
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 45 percent done.
CREM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.075209e-02	ci left: 7.728643e-01	ci right 7.891717e-01	k: 7811	n:10000
KS ci ratio: 8.625171e-03	ci left: 9.496057e-01	ci right 9.579274e-01	k: 9539	n:10000
CREM   10000 perm   1 sec   (6979 perm/sec)   p_kst 9.539000e-01   p_cons 7.811000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CREM.4_1332_10000_0.9539_0.7811_1.png
                gene_name: CREM
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
CRHBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.740328e-02	ci left: 6.623971e-01	ci right 6.809028e-01	k: 6717	n:10000
Cons ci ratio: 4.604759e-02	ci left: 4.104006e-01	ci right 4.298460e-01	k: 4201	n:10000
KS ci ratio: 3.369038e-02	ci left: 5.653406e-01	ci right 5.848156e-01	k: 5751	n:10000
CRHBP   10000 perm   1 sec   (7183 perm/sec)   p_kst 5.751000e-01   p_cons 4.201000e-01   p_joint 6.717000e-01

Outputting figure to mutsig2_images.part000000000043/CRHBP.4_997_10000_0.5751_0.4201_0.6717.png
                gene_name: CRHBP
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 49 percent done.
CRISP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.931866e-02	ci left: 2.338293e-01	ci right 2.507211e-01	k: 2422	n:10000
Cons ci ratio: 2.366999e-02	ci left: 7.240102e-01	ci right 7.414540e-01	k: 7328	n:10000
KS ci ratio: 1.329282e-01	ci left: 7.465870e-02	ci right 8.538747e-02	k: 799	n:10000
CRISP1   10000 perm   1 sec   (7323 perm/sec)   p_kst 7.990000e-02   p_cons 7.328000e-01   p_joint 2.422000e-01

Joint ci ratio: 8.179755e-02	ci left: 9.877126e-02	ci right 1.072446e-01	k: 2059	n:20000
Cons ci ratio: 1.687212e-02	ci left: 7.234366e-01	ci right 7.357966e-01	k: 14593	n:20000
KS ci ratio: 9.837429e-02	ci left: 6.992060e-02	ci right 7.720396e-02	k: 1470	n:20000
CRISP1   20000 perm   3 sec   (6496 perm/sec)   p_kst 7.350000e-02   p_cons 7.296500e-01   p_joint 1.029500e-01

Outputting figure to mutsig2_images.part000000000043/CRISP1.4_778_20000_0.0735_0.72965_0.10295.png
                gene_name: CRISP1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.11 

Current progress: 51 percent done.
CRISPLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.009714e-03	ci left: 9.454415e-01	ci right 9.540941e-01	k: 9499	n:10000
Cons ci ratio: 4.366397e-02	ci left: 4.364239e-01	ci right 4.560074e-01	k: 4462	n:10000
KS ci ratio: 3.014148e-02	ci left: 6.188425e-01	ci right 6.378826e-01	k: 6284	n:10000
CRISPLD1   10000 perm   1 sec   (6899 perm/sec)   p_kst 6.284000e-01   p_cons 4.462000e-01   p_joint 9.499000e-01

Outputting figure to mutsig2_images.part000000000043/CRISPLD1.4_1559_10000_0.6284_0.4462_0.9499.png
                gene_name: CRISPLD1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 53 percent done.
CRISPLD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.884244e-02	ci left: 1.291424e-01	ci right 1.426705e-01	k: 1358	n:10000
Cons ci ratio: 2.939738e-02	ci left: 6.305025e-01	ci right 6.494159e-01	k: 6400	n:10000
KS ci ratio: 1.490358e-01	ci left: 5.985938e-02	ci right 6.959607e-02	k: 646	n:10000
CRISPLD2   10000 perm   2 sec   (6257 perm/sec)   p_kst 6.460000e-02   p_cons 6.400000e-01   p_joint 1.358000e-01

Joint ci ratio: 7.115585e-02	ci left: 1.270421e-01	ci right 1.364652e-01	k: 2634	n:20000
Cons ci ratio: 1.980540e-02	ci left: 6.553961e-01	ci right 6.685568e-01	k: 13240	n:20000
KS ci ratio: 1.061783e-01	ci left: 6.040274e-02	ci right 6.722475e-02	k: 1275	n:20000
CRISPLD2   20000 perm   4 sec   (5518 perm/sec)   p_kst 6.375000e-02   p_cons 6.620000e-01   p_joint 1.317000e-01

Joint ci ratio: 5.731227e-02	ci left: 1.310202e-01	ci right 1.387840e-01	k: 4046	n:30000
Cons ci ratio: 1.612791e-02	ci left: 6.578197e-01	ci right 6.685487e-01	k: 19896	n:30000
KS ci ratio: 8.659821e-02	ci left: 6.115809e-02	ci right 6.672672e-02	k: 1917	n:30000
CRISPLD2   30000 perm   6 sec   (5299 perm/sec)   p_kst 6.390000e-02   p_cons 6.632000e-01   p_joint 1.348667e-01

Outputting figure to mutsig2_images.part000000000043/CRISPLD2.4_1550_30000_0.0639_0.6632_0.13487.png
                gene_name: CRISPLD2
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 55 percent done.
CRNN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.761308e-02	ci left: 3.942620e-01	ci right 4.135940e-01	k: 4039	n:10000
Cons ci ratio: 4.329487e-02	ci left: 4.406142e-01	ci right 4.602147e-01	k: 4504	n:10000
KS ci ratio: 6.977475e-02	ci left: 2.314584e-01	ci right 2.482934e-01	k: 2398	n:10000
CRNN   10000 perm   1 sec   (6794 perm/sec)   p_kst 2.398000e-01   p_cons 4.504000e-01   p_joint 4.039000e-01

Outputting figure to mutsig2_images.part000000000043/CRNN.4_1496_10000_0.2398_0.4504_0.4039.png
                gene_name: CRNN
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 57 percent done.
CRTC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.045236e-01	ci left: 1.168187e-01	ci right 1.298017e-01	k: 1232	n:10000
Cons ci ratio: 5.792695e-02	ci left: 3.049087e-01	ci right 3.231997e-01	k: 3140	n:10000
KS ci ratio: 1.335644e-01	ci left: 7.398022e-02	ci right 8.466637e-02	k: 792	n:10000
CRTC2   10000 perm   2 sec   (6614 perm/sec)   p_kst 7.920000e-02   p_cons 3.140000e-01   p_joint 1.232000e-01

Joint ci ratio: 8.457082e-02	ci left: 9.288305e-02	ci right 1.011345e-01	k: 1939	n:20000
Cons ci ratio: 4.042495e-02	ci left: 3.132880e-01	ci right 3.262644e-01	k: 6395	n:20000
KS ci ratio: 9.627114e-02	ci left: 7.285307e-02	ci right 8.027059e-02	k: 1530	n:20000
CRTC2   20000 perm   3 sec   (5896 perm/sec)   p_kst 7.650000e-02   p_cons 3.197500e-01   p_joint 9.695000e-02

Outputting figure to mutsig2_images.part000000000043/CRTC2.4_2138_20000_0.0765_0.31975_0.09695.png
                gene_name: CRTC2
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.10 

Current progress: 59 percent done.
CR1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.001671e-02	ci left: 1.521774e-01	ci right 1.666216e-01	k: 1593	n:10000
Cons ci ratio: 8.266728e-03	ci left: 9.533608e-01	ci right 9.613700e-01	k: 9575	n:10000
KS ci ratio: 1.326580e-01	ci left: 7.494951e-02	ci right 8.569647e-02	k: 802	n:10000
CR1L   10000 perm   2 sec   (6566 perm/sec)   p_kst 8.020000e-02   p_cons 9.575000e-01   p_joint 1.593000e-01

Joint ci ratio: 6.699699e-02	ci left: 1.412316e-01	ci right 1.510715e-01	k: 2922	n:20000
Cons ci ratio: 6.116977e-03	ci left: 9.505931e-01	ci right 9.564741e-01	k: 19072	n:20000
KS ci ratio: 9.153144e-02	ci left: 8.014239e-02	ci right 8.787906e-02	k: 1679	n:20000
CR1L   20000 perm   3 sec   (6028 perm/sec)   p_kst 8.395000e-02   p_cons 9.536000e-01   p_joint 1.461000e-01

Outputting figure to mutsig2_images.part000000000043/CR1L.3_1758_20000_0.08395_0.9536_0.1461.png
                gene_name: CR1L
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 61 percent done.
CRAMP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.941688e-02	ci left: 7.950668e-01	ci right 8.107563e-01	k: 8030	n:10000
Cons ci ratio: 4.328612e-02	ci left: 4.407139e-01	ci right 4.603149e-01	k: 4505	n:10000
KS ci ratio: 1.682287e-02	ci left: 8.372473e-01	ci right 8.515515e-01	k: 8445	n:10000
CRAMP1L   10000 perm   2 sec   (5830 perm/sec)   p_kst 8.445000e-01   p_cons 4.505000e-01   p_joint 8.030000e-01

Outputting figure to mutsig2_images.part000000000043/CRAMP1L.3_3890_10000_0.8445_0.4505_0.803.png
                gene_name: CRAMP1L
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 63 percent done.
CRAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.233755e-02	ci left: 5.853022e-01	ci right 6.046425e-01	k: 5950	n:10000
Cons ci ratio: 5.350308e-02	ci left: 3.398515e-01	ci right 3.586364e-01	k: 3492	n:10000
KS ci ratio: 2.624268e-02	ci left: 6.813348e-01	ci right 6.995541e-01	k: 6905	n:10000
CRAT   10000 perm   2 sec   (5955 perm/sec)   p_kst 6.905000e-01   p_cons 3.492000e-01   p_joint 5.950000e-01

Outputting figure to mutsig2_images.part000000000043/CRAT.3_1937_10000_0.6905_0.3492_0.595.png
                gene_name: CRAT
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 65 percent done.
CRBN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.342318e-02	ci left: 8.889287e-01	ci right 9.010401e-01	k: 8951	n:10000
Cons ci ratio: 3.178368e-02	ci left: 5.936327e-01	ci right 6.129071e-01	k: 6033	n:10000
KS ci ratio: 1.549534e-02	ci left: 8.580439e-01	ci right 8.715428e-01	k: 8649	n:10000
CRBN   10000 perm   1 sec   (6845 perm/sec)   p_kst 8.649000e-01   p_cons 6.033000e-01   p_joint 8.951000e-01

Outputting figure to mutsig2_images.part000000000043/CRBN.3_1373_10000_0.8649_0.6033_0.8951.png
                gene_name: CRBN
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 67 percent done.
CREB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.090626e-01	ci left: 1.081269e-01	ci right 1.206987e-01	k: 1143	n:10000
Cons ci ratio: 1.038047e-01	ci left: 1.182847e-01	ci right 1.313348e-01	k: 1247	n:10000
KS ci ratio: 1.093325e-01	ci left: 1.076389e-01	ci right 1.201870e-01	k: 1138	n:10000
CREB3   10000 perm   2 sec   (6627 perm/sec)   p_kst 1.138000e-01   p_cons 1.247000e-01   p_joint 1.143000e-01

Joint ci ratio: 8.385469e-02	ci left: 9.435467e-02	ci right 1.026625e-01	k: 1969	n:20000
Cons ci ratio: 7.282011e-02	ci left: 1.219226e-01	ci right 1.311863e-01	k: 2530	n:20000
KS ci ratio: 7.719653e-02	ci left: 1.097742e-01	ci right 1.186383e-01	k: 2283	n:20000
CREB3   20000 perm   3 sec   (5802 perm/sec)   p_kst 1.141500e-01   p_cons 1.265000e-01   p_joint 9.845000e-02

Outputting figure to mutsig2_images.part000000000043/CREB3.3_1152_20000_0.11415_0.1265_0.09845.png
                gene_name: CREB3
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.10 

Current progress: 69 percent done.
CREB3L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.482583e-02	ci left: 8.682565e-01	ci right 8.813243e-01	k: 8749	n:10000
KS ci ratio: 1.873938e-02	ci left: 8.062326e-01	ci right 8.215841e-01	k: 8140	n:10000
CREB3L1   10000 perm   2 sec   (6652 perm/sec)   p_kst 8.140000e-01   p_cons 8.749000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CREB3L1.3_1608_10000_0.814_0.8749_1.png
                gene_name: CREB3L1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
CREB3L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.412697e-02	ci left: 8.786872e-01	ci right 8.912875e-01	k: 8851	n:10000
KS ci ratio: 1.996744e-02	ci left: 7.859382e-01	ci right 8.018902e-01	k: 7940	n:10000
CREB3L3   10000 perm   1 sec   (7146 perm/sec)   p_kst 7.940000e-01   p_cons 8.851000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CREB3L3.3_1426_10000_0.794_0.8851_1.png
                gene_name: CREB3L3
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
CROT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.496645e-02	ci left: 7.024085e-01	ci right 7.202682e-01	k: 7114	n:10000
Cons ci ratio: 2.774561e-02	ci left: 6.568600e-01	ci right 6.754431e-01	k: 6662	n:10000
KS ci ratio: 3.381460e-02	ci left: 5.635359e-01	ci right 5.830214e-01	k: 5733	n:10000
CROT   10000 perm   2 sec   (6367 perm/sec)   p_kst 5.733000e-01   p_cons 6.662000e-01   p_joint 7.114000e-01

Outputting figure to mutsig2_images.part000000000043/CROT.3_1991_10000_0.5733_0.6662_0.7114.png
                gene_name: CROT
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 75 percent done.
CRX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.595726e-02	ci left: 5.331752e-01	ci right 5.527998e-01	k: 5430	n:10000
Cons ci ratio: 2.550231e-02	ci left: 6.935327e-01	ci right 7.115492e-01	k: 7026	n:10000
KS ci ratio: 5.586816e-02	ci left: 3.205861e-01	ci right 3.391131e-01	k: 3298	n:10000
CRX   10000 perm   1 sec   (7384 perm/sec)   p_kst 3.298000e-01   p_cons 7.026000e-01   p_joint 5.430000e-01

Outputting figure to mutsig2_images.part000000000043/CRX.3_912_10000_0.3298_0.7026_0.543.png
                gene_name: CRX
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 76 percent done.
CRYGB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.156431e-02	ci left: 9.145095e-01	ci right 9.252444e-01	k: 9200	n:10000
KS ci ratio: 1.301240e-02	ci left: 8.947738e-01	ci right 9.065916e-01	k: 9008	n:10000
CRYGB   10000 perm   1 sec   (6983 perm/sec)   p_kst 9.008000e-01   p_cons 9.200000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CRYGB.3_540_10000_0.9008_0.92_1.png
                gene_name: CRYGB
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
CRADD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.097309e-02	ci left: 6.059831e-01	ci right 6.251495e-01	k: 6156	n:10000
Cons ci ratio: 7.679345e-02	ci left: 1.987011e-01	ci right 2.146701e-01	k: 2066	n:10000
KS ci ratio: 2.642083e-02	ci left: 6.784124e-01	ci right 6.966782e-01	k: 6876	n:10000
CRADD   10000 perm   1 sec   (7804 perm/sec)   p_kst 6.876000e-01   p_cons 2.066000e-01   p_joint 6.156000e-01

Outputting figure to mutsig2_images.part000000000043/CRADD.2_608_10000_0.6876_0.2066_0.6156.png
                gene_name: CRADD
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 80 percent done.
CREG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.521293e-01	ci left: 2.062036e-02	ci right 2.666153e-02	k: 235	n:10000
Cons ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
KS ci ratio: 3.717692e-02	ci left: 5.165574e-01	ci right 5.362273e-01	k: 5264	n:10000
CREG2   10000 perm   1 sec   (7231 perm/sec)   p_kst 5.264000e-01   p_cons 3.600000e-02   p_joint 2.350000e-02

Joint ci ratio: 1.187710e-01	ci left: 4.857450e-02	ci right 5.475667e-02	k: 1032	n:20000
Cons ci ratio: 1.272464e-01	ci left: 4.241066e-02	ci right 4.822246e-02	k: 905	n:20000
KS ci ratio: 2.627934e-02	ci left: 5.196518e-01	ci right 5.335404e-01	k: 10532	n:20000
CREG2   20000 perm   3 sec   (6528 perm/sec)   p_kst 5.266000e-01   p_cons 4.525000e-02   p_joint 5.160000e-02

Joint ci ratio: 8.698645e-02	ci left: 6.063560e-02	ci right 6.618266e-02	k: 1901	n:30000
Cons ci ratio: 1.027927e-01	ci left: 4.385197e-02	ci right 4.863640e-02	k: 1386	n:30000
KS ci ratio: 2.162592e-02	ci left: 5.170293e-01	ci right 5.283663e-01	k: 15681	n:30000
CREG2   30000 perm   5 sec   (6231 perm/sec)   p_kst 5.227000e-01   p_cons 4.620000e-02   p_joint 6.336667e-02

Joint ci ratio: 7.973899e-02	ci left: 5.469865e-02	ci right 5.926593e-02	k: 2278	n:40000
Cons ci ratio: 8.900463e-02	ci left: 4.418782e-02	ci right 4.832838e-02	k: 1849	n:40000
KS ci ratio: 1.868850e-02	ci left: 5.188666e-01	ci right 5.286800e-01	k: 20951	n:40000
CREG2   40000 perm   7 sec   (5936 perm/sec)   p_kst 5.237750e-01   p_cons 4.622500e-02   p_joint 5.695000e-02

Outputting figure to mutsig2_images.part000000000043/CREG2.2_889_40000_0.52377_0.046225_0.05695.png
                gene_name: CREG2
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.059 

Current progress: 82 percent done.
CRELD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.102425e-02	ci left: 2.831000e-01	ci right 3.010213e-01	k: 2920	n:10000
Cons ci ratio: 6.440827e-03	ci left: 9.704780e-01	ci right 9.768420e-01	k: 9738	n:10000
KS ci ratio: 2.824171e-01	ci left: 1.622887e-02	ci right 2.165650e-02	k: 188	n:10000
CRELD1   10000 perm   1 sec   (7358 perm/sec)   p_kst 1.880000e-02   p_cons 9.738000e-01   p_joint 2.920000e-01

Joint ci ratio: 4.383038e-03	ci left: 9.734184e-01	ci right 9.777418e-01	k: 19513	n:20000
Cons ci ratio: 4.664911e-03	ci left: 9.701387e-01	ci right 9.747225e-01	k: 19450	n:20000
KS ci ratio: 1.918348e-01	ci left: 1.848579e-02	ci right 2.245535e-02	k: 408	n:20000
CRELD1   20000 perm   3 sec   (6508 perm/sec)   p_kst 2.040000e-02   p_cons 9.725000e-01   p_joint 9.756500e-01

Joint ci ratio: 2.832861e-02	ci left: 3.840427e-01	ci right 3.951120e-01	k: 11687	n:30000
Cons ci ratio: 3.826779e-03	ci left: 9.703111e-01	ci right 9.740634e-01	k: 29167	n:30000
KS ci ratio: 1.530433e-01	ci left: 1.976016e-02	ci right 2.306676e-02	k: 641	n:30000
CRELD1   30000 perm   5 sec   (6175 perm/sec)   p_kst 2.136667e-02   p_cons 9.722333e-01   p_joint 3.895667e-01

Joint ci ratio: 2.465881e-02	ci left: 3.823724e-01	ci right 3.919440e-01	k: 15486	n:40000
Cons ci ratio: 3.370447e-03	ci left: 9.696167e-01	ci right 9.729144e-01	k: 38852	n:40000
KS ci ratio: 1.333379e-01	ci left: 1.973812e-02	ci right 2.258199e-02	k: 845	n:40000
CRELD1   40000 perm   7 sec   (5918 perm/sec)   p_kst 2.112500e-02   p_cons 9.713000e-01   p_joint 3.871500e-01

Joint ci ratio: 2.211020e-02	ci left: 3.817096e-01	ci right 3.902637e-01	k: 19299	n:50000
Cons ci ratio: 3.017628e-03	ci left: 9.697374e-01	ci right 9.726875e-01	k: 48562	n:50000
KS ci ratio: 1.190030e-01	ci left: 1.997464e-02	ci right 2.252137e-02	k: 1061	n:50000
CRELD1   50000 perm   9 sec   (5734 perm/sec)   p_kst 2.122000e-02   p_cons 9.712400e-01   p_joint 3.859800e-01

Joint ci ratio: 2.019014e-02	ci left: 3.819355e-01	ci right 3.897422e-01	k: 23150	n:60000
Cons ci ratio: 2.770457e-03	ci left: 9.695408e-01	ci right 9.722468e-01	k: 58255	n:60000
KS ci ratio: 1.093112e-01	ci left: 1.983515e-02	ci right 2.214484e-02	k: 1258	n:60000
CRELD1   60000 perm   11 sec   (5597 perm/sec)   p_kst 2.096667e-02   p_cons 9.709167e-01   p_joint 3.858333e-01

Joint ci ratio: 1.865895e-02	ci left: 3.830757e-01	ci right 3.903051e-01	k: 27068	n:70000
Cons ci ratio: 2.587568e-03	ci left: 9.691323e-01	ci right 9.716571e-01	k: 67929	n:70000
KS ci ratio: 1.012320e-01	ci left: 1.990877e-02	ci right 2.204548e-02	k: 1467	n:70000
CRELD1   70000 perm   13 sec   (5462 perm/sec)   p_kst 2.095714e-02   p_cons 9.704143e-01   p_joint 3.866857e-01

Joint ci ratio: 1.745109e-02	ci left: 3.833857e-01	ci right 3.901475e-01	k: 30941	n:80000
Cons ci ratio: 2.411491e-03	ci left: 9.694315e-01	ci right 9.717842e-01	k: 77650	n:80000
KS ci ratio: 9.419945e-02	ci left: 2.018852e-02	ci right 2.219642e-02	k: 1694	n:80000
CRELD1   80000 perm   15 sec   (5344 perm/sec)   p_kst 2.117500e-02   p_cons 9.706250e-01   p_joint 3.867625e-01

Outputting figure to mutsig2_images.part000000000043/CRELD1.2_1501_80000_0.021175_0.97062_0.38676.png
                gene_name: CRELD1
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 84 percent done.
CRHR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.304874e-02	ci left: 8.942609e-01	ci right 9.061049e-01	k: 9003	n:10000
Cons ci ratio: 6.971741e-02	ci left: 2.317548e-01	ci right 2.485968e-01	k: 2401	n:10000
KS ci ratio: 7.136961e-03	ci left: 9.643613e-01	ci right 9.713627e-01	k: 9680	n:10000
CRHR1   10000 perm   1 sec   (7342 perm/sec)   p_kst 9.680000e-01   p_cons 2.401000e-01   p_joint 9.003000e-01

Outputting figure to mutsig2_images.part000000000043/CRHR1.2_1391_10000_0.968_0.2401_0.9003.png
                gene_name: CRHR1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 86 percent done.
CRKL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.280774e-02	ci left: 8.976473e-01	ci right 9.093165e-01	k: 9036	n:10000
Cons ci ratio: 3.921764e-02	ci left: 4.898515e-01	ci right 5.095487e-01	k: 4997	n:10000
KS ci ratio: 2.906652e-02	ci left: 6.357313e-01	ci right 6.545841e-01	k: 6452	n:10000
CRKL   10000 perm   1 sec   (6894 perm/sec)   p_kst 6.452000e-01   p_cons 4.997000e-01   p_joint 9.036000e-01

Outputting figure to mutsig2_images.part000000000043/CRKL.2_924_10000_0.6452_0.4997_0.9036.png
                gene_name: CRKL
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 88 percent done.
CRLF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.948217e-02	ci left: 3.759451e-01	ci right 3.951216e-01	k: 3855	n:10000
KS ci ratio: 3.272810e-02	ci left: 5.794826e-01	ci right 5.988655e-01	k: 5892	n:10000
CRLF3   10000 perm   1 sec   (7357 perm/sec)   p_kst 5.892000e-01   p_cons 3.855000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CRLF3.2_1361_10000_0.5892_0.3855_1.png
                gene_name: CRLF3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
CRTC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.883601e-03	ci left: 9.354766e-01	ci right 9.448650e-01	k: 9403	n:10000
Cons ci ratio: 3.150556e-02	ci left: 5.978492e-01	ci right 6.170882e-01	k: 6075	n:10000
KS ci ratio: 6.560300e-02	ci left: 2.543910e-01	ci right 2.717472e-01	k: 2630	n:10000
CRTC3   10000 perm   1 sec   (7085 perm/sec)   p_kst 2.630000e-01   p_cons 6.075000e-01   p_joint 9.403000e-01

Outputting figure to mutsig2_images.part000000000043/CRTC3.2_1920_10000_0.263_0.6075_0.9403.png
                gene_name: CRTC3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.94 

Current progress: 92 percent done.
CRYBB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.354051e-02	ci left: 4.378206e-01	ci right 4.574099e-01	k: 4476	n:10000
Cons ci ratio: 2.934000e-02	ci left: 6.314074e-01	ci right 6.503105e-01	k: 6409	n:10000
KS ci ratio: 6.028013e-02	ci left: 2.881535e-01	ci right 3.061648e-01	k: 2971	n:10000
CRYBB3   10000 perm   1 sec   (7651 perm/sec)   p_kst 2.971000e-01   p_cons 6.409000e-01   p_joint 4.476000e-01

Outputting figure to mutsig2_images.part000000000043/CRYBB3.2_656_10000_0.2971_0.6409_0.4476.png
                gene_name: CRYBB3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 94 percent done.
CRYGC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.349556e-01	ci left: 7.252675e-02	ci right 8.312075e-02	k: 777	n:10000
Cons ci ratio: 4.625609e-02	ci left: 4.082083e-01	ci right 4.276396e-01	k: 4179	n:10000
KS ci ratio: 2.228902e-01	ci left: 2.664945e-02	ci right 3.342800e-02	k: 299	n:10000
CRYGC   10000 perm   1 sec   (7468 perm/sec)   p_kst 2.990000e-02   p_cons 4.179000e-01   p_joint 7.770000e-02

Joint ci ratio: 1.020536e-01	ci left: 6.518352e-02	ci right 7.224249e-02	k: 1373	n:20000
Cons ci ratio: 3.302221e-02	ci left: 4.064635e-01	ci right 4.201617e-01	k: 8266	n:20000
KS ci ratio: 1.572061e-01	ci left: 2.777552e-02	ci right 3.256237e-02	k: 602	n:20000
CRYGC   20000 perm   3 sec   (6468 perm/sec)   p_kst 3.010000e-02   p_cons 4.133000e-01   p_joint 6.865000e-02

Joint ci ratio: 6.153039e-02	ci left: 1.154880e-01	ci right 1.228526e-01	k: 3574	n:30000
Cons ci ratio: 2.692078e-02	ci left: 4.084848e-01	ci right 4.196652e-01	k: 12422	n:30000
KS ci ratio: 1.277417e-01	ci left: 2.848615e-02	ci right 3.240548e-02	k: 912	n:30000
CRYGC   30000 perm   5 sec   (5953 perm/sec)   p_kst 3.040000e-02   p_cons 4.140667e-01   p_joint 1.191333e-01

Joint ci ratio: 6.740944e-02	ci left: 7.531633e-02	ci right 8.059513e-02	k: 3117	n:40000
Cons ci ratio: 2.324451e-02	ci left: 4.106893e-01	ci right 4.203730e-01	k: 16621	n:40000
KS ci ratio: 1.114969e-01	ci left: 2.830132e-02	ci right 3.166737e-02	k: 1198	n:40000
CRYGC   40000 perm   7 sec   (5791 perm/sec)   p_kst 2.995000e-02   p_cons 4.155250e-01   p_joint 7.792500e-02

Joint ci ratio: 6.760780e-02	ci left: 6.086611e-02	ci right 6.514480e-02	k: 3149	n:50000
Cons ci ratio: 2.079264e-02	ci left: 4.111555e-01	ci right 4.198143e-01	k: 20774	n:50000
KS ci ratio: 9.937633e-02	ci left: 2.867823e-02	ci right 3.169664e-02	k: 1508	n:50000
CRYGC   50000 perm   9 sec   (5636 perm/sec)   p_kst 3.016000e-02   p_cons 4.154800e-01   p_joint 6.298000e-02

Outputting figure to mutsig2_images.part000000000043/CRYGC.2_537_50000_0.03016_0.41548_0.06298.png
                gene_name: CRYGC
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.065 

Current progress: 96 percent done.
CRYGS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.786866e-03	ci left: 9.828525e-01	ci right 9.876587e-01	k: 9854	n:10000
KS ci ratio: 2.889536e-02	ci left: 6.384467e-01	ci right 6.572671e-01	k: 6479	n:10000
CRYGS   10000 perm   1 sec   (7482 perm/sec)   p_kst 6.479000e-01   p_cons 9.854000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000043/CRYGS.2_549_10000_0.6479_0.9854_1.png
                gene_name: CRYGS
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
CSAD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.261114e-01	ci left: 8.251809e-02	ci right 9.372320e-02	k: 880	n:10000
Cons ci ratio: 1.150142e-02	ci left: 9.153336e-01	ci right 9.260198e-01	k: 9208	n:10000
KS ci ratio: 1.435388e-01	ci left: 6.439839e-02	ci right 7.445420e-02	k: 693	n:10000
CSAD   10000 perm   1 sec   (6811 perm/sec)   p_kst 6.930000e-02   p_cons 9.208000e-01   p_joint 8.800000e-02

Joint ci ratio: 3.729342e-02	ci left: 3.491613e-01	ci right 3.624807e-01	k: 7116	n:20000
Cons ci ratio: 8.277740e-03	ci left: 9.142646e-01	ci right 9.219133e-01	k: 18363	n:20000
KS ci ratio: 1.016964e-01	ci left: 6.562284e-02	ci right 7.270304e-02	k: 1382	n:20000
CSAD   20000 perm   3 sec   (5870 perm/sec)   p_kst 6.910000e-02   p_cons 9.181500e-01   p_joint 3.558000e-01

Joint ci ratio: 3.042669e-02	ci left: 3.507454e-01	ci right 3.616158e-01	k: 10685	n:30000
Cons ci ratio: 6.782980e-03	ci left: 9.144312e-01	ci right 9.206877e-01	k: 27528	n:30000
KS ci ratio: 8.232350e-02	ci left: 6.736673e-02	ci right 7.318349e-02	k: 2107	n:30000
CSAD   30000 perm   5 sec   (5653 perm/sec)   p_kst 7.023333e-02   p_cons 9.176000e-01   p_joint 3.561667e-01

Outputting figure to mutsig2_images.part000000000043/CSAD.2_1627_30000_0.070233_0.9176_0.35617.png
                gene_name: CSAD
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000043
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 43 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1648>
Subject: Job 9893899: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1648>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000044> was used as the working directory.
Started at Sat Oct  6 00:04:36 2012
Results reported at Sat Oct  6 00:15:05 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000044.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000044.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 44  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000044.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    636.82 sec.
    Max Memory :      3536 MB
    Max Swap   :      5882 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
44
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 44
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 44: processing genes 3877 - 3967
Calculating significance of each gene.
Using projection method.
3877	CSAG1	1
3878	CSDA	4.181612e-01
3879	CSDC2	1
3880	CSDE1	1.269497e-02
3881	CSE1L	4.793424e-01
3882	CSF1	4.268574e-01
3883	CSF1R	9.155302e-01
3884	CSF2	1
3885	CSF2RB	4.210412e-01
3886	CSF3	1
3887	CSF3R	8.950616e-02
3888	CSGALNACT1	1
3889	CSGALNACT2	3.412367e-01
3890	CSH1	3.711329e-01
3891	CSH2	1
3892	CSHL1	1
3893	CSK	4.228114e-01
3894	CSMD1	1.813230e-04
3895	CSMD2	5.233308e-02
3896	CSMD3	3.125093e-05
3897	CSN1S1	1
3898	CSN2	5.951685e-01
3899	CSN3	4.666215e-01
3900	CSNK1A1	4.849560e-01
3901	CSNK1A1L	2.311120e-02
3902	CSNK1D	1.446212e-01
3903	CSNK1E	1
3904	CSNK1G1	8.163333e-01
3905	CSNK1G2	1
3906	CSNK1G3	4.785492e-01
3907	CSNK2A1	2.230206e-01
3908	CSNK2A2	2.588532e-01
3909	CSNK2B	1.233208e-01
3910	CSPG4	9.990029e-01
3911	CSPG5	6.450566e-01
3912	CSPP1	3.938200e-01
3913	CSRNP1	5.253378e-01
3914	CSRNP2	6.306328e-01
3915	CSRNP3	1.891119e-01
3916	CSRP1	2.702752e-01
3917	CSRP2	4.470582e-02
3918	CSRP2BP	3.096913e-01
3919	CSRP3	1
3920	CST1	4.635539e-01
3921	CST11	1
3922	CST2	1
3923	CST3	1
3924	CST4	3.879211e-01
3925	CST5	2.764484e-01
3926	CST6	2.605968e-01
3927	CST7	4.553301e-01
3928	CST8	4.005915e-01
3929	CST9	6.704749e-03
3930	CST9L	5.352973e-01
3931	CSTA	2.507715e-01
3932	CSTB	1
3933	CSTF1	3.578987e-01
3934	CSTF2	1
3935	CSTF2T	6.569681e-02
3936	CSTF3	4.229844e-01
3937	CSTL1	9.124228e-02
3938	CT45A5	7.105119e-02
3939	CT62	3.437427e-01
3940	CTAG2	1
3941	CTAGE1	5.884891e-01
3942	CTAGE5	6.189042e-01
3943	CTAGE6P	3.255825e-01
3944	CTBP1	8.868585e-01
3945	CTBP2	9.458806e-01
3946	CTBS	8.977639e-02
3947	CTCF	5.359943e-03
3948	CTCFL	6.990601e-02
3949	CTDP1	9.844362e-01
3950	CTDSP1	3.099359e-01
3951	CTDSP2	1
3952	CTDSPL	1.043150e-01
3953	CTDSPL2	3.089437e-01
3954	CTGF	1
3955	CTH	5.626451e-01
3956	CTHRC1	4.864356e-02
3957	CTLA4	2.661874e-01
3958	CTNNA1	6.300432e-03
3959	CTNNA2	1.043750e-02
3960	CTNNA3	2.220526e-02
3961	CTNNAL1	4.253683e-01
3962	CTNNB1	1.791789e-06
3963	CTNNBIP1	1.525670e-01
3964	CTNNBL1	1.179477e-01
3965	CTNND1	8.005491e-01
3966	CTNND2	4.175135e-02
3967	CTNS	5.253963e-01
Done

Running MutSig 2:
Scatter job 44: processing genes 3877 - 3967
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CSMD1
Processing conservation and coverage...
91% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.008422e-02	ci left: 9.330945e-01	ci right 9.426485e-01	k: 9380	n:10000
Cons ci ratio: 3.618968e-02	ci left: 5.299709e-01	ci right 5.496059e-01	k: 5398	n:10000
KS ci ratio: 2.093398e-02	ci left: 7.698255e-01	ci right 7.862122e-01	k: 7781	n:10000
CSMD1   10000 perm   4 sec   (2611 perm/sec)   p_kst 7.781000e-01   p_cons 5.398000e-01   p_joint 9.380000e-01

Outputting figure to mutsig2_images.part000000000044/CSMD1.45_10976_10000_0.7781_0.5398_0.938.png
                gene_name: CSMD1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 2 percent done.
CSMD3
Processing conservation and coverage...
87% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.347270e-02	ci left: 2.672549e-01	ci right 2.848757e-01	k: 2760	n:10000
Cons ci ratio: 3.453877e-02	ci left: 5.531109e-01	ci right 5.726525e-01	k: 5629	n:10000
KS ci ratio: 8.558480e-02	ci left: 1.659274e-01	ci right 1.808634e-01	k: 1733	n:10000
CSMD3   10000 perm   4 sec   (2628 perm/sec)   p_kst 1.733000e-01   p_cons 5.629000e-01   p_joint 2.760000e-01

Outputting figure to mutsig2_images.part000000000044/CSMD3.40_11470_10000_0.1733_0.5629_0.276.png
                gene_name: CSMD3
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 3 percent done.
CSMD2
Processing conservation and coverage...
93% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.091696e-02	ci left: 4.686667e-01	ci right 4.883458e-01	k: 4785	n:10000
Cons ci ratio: 5.280433e-02	ci left: 3.458134e-01	ci right 3.646710e-01	k: 3552	n:10000
KS ci ratio: 5.172698e-02	ci left: 3.552563e-01	ci right 3.742225e-01	k: 3647	n:10000
CSMD2   10000 perm   3 sec   (2980 perm/sec)   p_kst 3.647000e-01   p_cons 3.552000e-01   p_joint 4.785000e-01

Outputting figure to mutsig2_images.part000000000044/CSMD2.29_10740_10000_0.3647_0.3552_0.4785.png
                gene_name: CSMD2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 5 percent done.
CTNND2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.987856e-02	ci left: 2.909285e-01	ci right 3.089882e-01	k: 2999	n:10000
Cons ci ratio: 2.659312e-02	ci left: 6.755913e-01	ci right 6.939010e-01	k: 6848	n:10000
KS ci ratio: 7.969522e-02	ci left: 1.869789e-01	ci right 2.025993e-01	k: 1947	n:10000
CTNND2   10000 perm   2 sec   (4490 perm/sec)   p_kst 1.947000e-01   p_cons 6.848000e-01   p_joint 2.999000e-01

Outputting figure to mutsig2_images.part000000000044/CTNND2.13_3766_10000_0.1947_0.6848_0.2999.png
                gene_name: CTNND2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 7 percent done.
CTNNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.597726e-02	ci left: 2.522150e-01	ci right 2.695245e-01	k: 2608	n:10000
Cons ci ratio: 1.025412e-01	ci left: 1.209243e-01	ci right 1.340936e-01	k: 1274	n:10000
KS ci ratio: 3.378007e-02	ci left: 5.640372e-01	ci right 5.835198e-01	k: 5738	n:10000
CTNNA1   10000 perm   2 sec   (4531 perm/sec)   p_kst 5.738000e-01   p_cons 1.274000e-01   p_joint 2.608000e-01

Joint ci ratio: 4.263486e-02	ci left: 2.907219e-01	ci right 3.034372e-01	k: 5941	n:20000
Cons ci ratio: 7.239501e-02	ci left: 1.232023e-01	ci right 1.325062e-01	k: 2556	n:20000
KS ci ratio: 2.379732e-02	ci left: 5.687647e-01	ci right 5.825133e-01	k: 11513	n:20000
CTNNA1   20000 perm   5 sec   (4149 perm/sec)   p_kst 5.756500e-01   p_cons 1.278000e-01   p_joint 2.970500e-01

Outputting figure to mutsig2_images.part000000000044/CTNNA1.12_2789_20000_0.57565_0.1278_0.29705.png
                gene_name: CTNNA1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 9 percent done.
CTNNA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.340871e-02	ci left: 4.393171e-01	ci right 4.589126e-01	k: 4491	n:10000
Cons ci ratio: 2.678422e-02	ci left: 6.724682e-01	ci right 6.908258e-01	k: 6817	n:10000
KS ci ratio: 5.465244e-02	ci left: 3.303159e-01	ci right 3.489775e-01	k: 3396	n:10000
CTNNA2   10000 perm   2 sec   (4876 perm/sec)   p_kst 3.396000e-01   p_cons 6.817000e-01   p_joint 4.491000e-01

Outputting figure to mutsig2_images.part000000000044/CTNNA2.12_2789_10000_0.3396_0.6817_0.4491.png
                gene_name: CTNNA2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 10 percent done.
CTNNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.836263e-02	ci left: 3.867942e-01	ci right 4.060662e-01	k: 3964	n:10000
Cons ci ratio: 8.447514e-03	ci left: 9.514824e-01	ci right 9.596496e-01	k: 9557	n:10000
KS ci ratio: 7.066629e-02	ci left: 2.269154e-01	ci right 2.436391e-01	k: 2352	n:10000
CTNNB1   10000 perm   2 sec   (4717 perm/sec)   p_kst 2.352000e-01   p_cons 9.557000e-01   p_joint 3.964000e-01

Outputting figure to mutsig2_images.part000000000044/CTNNB1.12_2402_10000_0.2352_0.9557_0.3964.png
                gene_name: CTNNB1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 12 percent done.
CSDE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.952695e-02	ci left: 2.327426e-01	ci right 2.496084e-01	k: 2411	n:10000
Cons ci ratio: 4.899491e-02	ci left: 3.806225e-01	ci right 3.998415e-01	k: 3902	n:10000
KS ci ratio: 1.131226e-01	ci left: 1.011041e-01	ci right 1.133258e-01	k: 1071	n:10000
CSDE1   10000 perm   2 sec   (4645 perm/sec)   p_kst 1.071000e-01   p_cons 3.902000e-01   p_joint 2.411000e-01

Joint ci ratio: 7.554461e-02	ci left: 1.141498e-01	ci right 1.231614e-01	k: 2372	n:20000
Cons ci ratio: 3.409034e-02	ci left: 3.911566e-01	ci right 4.047731e-01	k: 7959	n:20000
KS ci ratio: 8.222091e-02	ci left: 9.783865e-02	ci right 1.062774e-01	k: 2040	n:20000
CSDE1   20000 perm   5 sec   (4244 perm/sec)   p_kst 1.020000e-01   p_cons 3.979500e-01   p_joint 1.186000e-01

Outputting figure to mutsig2_images.part000000000044/CSDE1.11_2611_20000_0.102_0.39795_0.1186.png
                gene_name: CSDE1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 14 percent done.
CSF3R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.091111e-02	ci left: 3.626146e-01	ci right 3.816599e-01	k: 3721	n:10000
Cons ci ratio: 8.031013e-02	ci left: 1.846161e-01	ci right 2.001635e-01	k: 1923	n:10000
KS ci ratio: 3.637213e-02	ci left: 5.274678e-01	ci right 5.471105e-01	k: 5373	n:10000
CSF3R   10000 perm   2 sec   (4916 perm/sec)   p_kst 5.373000e-01   p_cons 1.923000e-01   p_joint 3.721000e-01

Outputting figure to mutsig2_images.part000000000044/CSF3R.10_2761_10000_0.5373_0.1923_0.3721.png
                gene_name: CSF3R
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 16 percent done.
CSPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.995533e-02	ci left: 3.714676e-01	ci right 3.906018e-01	k: 3810	n:10000
Cons ci ratio: 9.909574e-02	ci left: 1.285551e-01	ci right 1.420581e-01	k: 1352	n:10000
KS ci ratio: 2.963379e-02	ci left: 6.267827e-01	ci right 6.457378e-01	k: 6363	n:10000
CSPP1   10000 perm   2 sec   (4255 perm/sec)   p_kst 6.363000e-01   p_cons 1.352000e-01   p_joint 3.810000e-01

Outputting figure to mutsig2_images.part000000000044/CSPP1.10_3895_10000_0.6363_0.1352_0.381.png
                gene_name: CSPP1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 17 percent done.
CTCF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.594231e-02	ci left: 6.862735e-01	ci right 7.044125e-01	k: 6954	n:10000
Cons ci ratio: 2.661160e-02	ci left: 6.752890e-01	ci right 6.936034e-01	k: 6845	n:10000
KS ci ratio: 3.674677e-02	ci left: 5.223623e-01	ci right 5.420189e-01	k: 5322	n:10000
CTCF   10000 perm   2 sec   (5047 perm/sec)   p_kst 5.322000e-01   p_cons 6.845000e-01   p_joint 6.954000e-01

Outputting figure to mutsig2_images.part000000000044/CTCF.9_2224_10000_0.5322_0.6845_0.6954.png
                gene_name: CTCF
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 19 percent done.
CTNNA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
Cons ci ratio: 1.186529e-01	ci left: 9.253239e-02	ci right 1.043027e-01	k: 983	n:10000
KS ci ratio: 4.788103e-02	ci left: 3.915733e-01	ci right 4.108842e-01	k: 4012	n:10000
CTNNA3   10000 perm   2 sec   (4835 perm/sec)   p_kst 4.012000e-01   p_cons 9.830000e-02   p_joint 1.890000e-01

Joint ci ratio: 4.900279e-02	ci left: 2.364241e-01	ci right 2.483509e-01	k: 4847	n:20000
Cons ci ratio: 8.406786e-02	ci left: 9.391315e-02	ci right 1.022041e-01	k: 1960	n:20000
KS ci ratio: 3.423661e-02	ci left: 3.891129e-01	ci right 4.027174e-01	k: 7918	n:20000
CTNNA3   20000 perm   5 sec   (4393 perm/sec)   p_kst 3.959000e-01   p_cons 9.800000e-02   p_joint 2.423500e-01

Outputting figure to mutsig2_images.part000000000044/CTNNA3.9_2756_20000_0.3959_0.098_0.24235.png
                gene_name: CTNNA3
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 21 percent done.
CTCFL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.521756e-02	ci left: 3.257483e-01	ci right 3.443479e-01	k: 3350	n:10000
Cons ci ratio: 3.985010e-02	ci left: 4.818551e-01	ci right 5.015497e-01	k: 4917	n:10000
KS ci ratio: 6.383989e-02	ci left: 2.649783e-01	ci right 2.825537e-01	k: 2737	n:10000
CTCFL   10000 perm   2 sec   (5147 perm/sec)   p_kst 2.737000e-01   p_cons 4.917000e-01   p_joint 3.350000e-01

Outputting figure to mutsig2_images.part000000000044/CTCFL.8_2032_10000_0.2737_0.4917_0.335.png
                gene_name: CTCFL
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 22 percent done.
CSF2RB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.553281e-02	ci left: 6.930285e-01	ci right 7.110537e-01	k: 7021	n:10000
Cons ci ratio: 2.914909e-02	ci left: 6.344240e-01	ci right 6.532922e-01	k: 6439	n:10000
KS ci ratio: 3.482738e-02	ci left: 5.490022e-01	ci right 5.685635e-01	k: 5588	n:10000
CSF2RB   10000 perm   2 sec   (4870 perm/sec)   p_kst 5.588000e-01   p_cons 6.439000e-01   p_joint 7.021000e-01

Outputting figure to mutsig2_images.part000000000044/CSF2RB.7_2746_10000_0.5588_0.6439_0.7021.png
                gene_name: CSF2RB
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 24 percent done.
CSTF2T
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.205655e-02	ci left: 5.895172e-01	ci right 6.088250e-01	k: 5992	n:10000
Cons ci ratio: 2.729774e-02	ci left: 6.641089e-01	ci right 6.825900e-01	k: 6734	n:10000
KS ci ratio: 5.823758e-02	ci left: 3.026276e-01	ci right 3.208822e-01	k: 3117	n:10000
CSTF2T   10000 perm   2 sec   (5228 perm/sec)   p_kst 3.117000e-01   p_cons 6.734000e-01   p_joint 5.992000e-01

Outputting figure to mutsig2_images.part000000000044/CSTF2T.7_1855_10000_0.3117_0.6734_0.5992.png
                gene_name: CSTF2T
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 26 percent done.
CTNNAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.073706e-02	ci left: 4.708643e-01	ci right 4.905469e-01	k: 4807	n:10000
Cons ci ratio: 8.912044e-02	ci left: 1.548277e-01	ci right 1.693697e-01	k: 1620	n:10000
KS ci ratio: 1.007556e-02	ci left: 9.331980e-01	ci right 9.427449e-01	k: 9381	n:10000
CTNNAL1   10000 perm   2 sec   (5288 perm/sec)   p_kst 9.381000e-01   p_cons 1.620000e-01   p_joint 4.807000e-01

Outputting figure to mutsig2_images.part000000000044/CTNNAL1.7_2281_10000_0.9381_0.162_0.4807.png
                gene_name: CTNNAL1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 28 percent done.
CSRP2BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.209097e-02	ci left: 4.545866e-01	ci right 4.742341e-01	k: 4644	n:10000
Cons ci ratio: 4.465815e-02	ci left: 4.253532e-01	ci right 4.448846e-01	k: 4351	n:10000
KS ci ratio: 5.897850e-02	ci left: 2.972729e-01	ci right 3.154400e-01	k: 3063	n:10000
CSRP2BP   10000 perm   2 sec   (5344 perm/sec)   p_kst 3.063000e-01   p_cons 4.351000e-01   p_joint 4.644000e-01

Outputting figure to mutsig2_images.part000000000044/CSRP2BP.6_2389_10000_0.3063_0.4351_0.4644.png
                gene_name: CSRP2BP
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 29 percent done.
CTNND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.315017e-02	ci left: 8.928248e-01	ci right 9.047417e-01	k: 8989	n:10000
Cons ci ratio: 1.459481e-02	ci left: 8.717317e-01	ci right 8.846470e-01	k: 8783	n:10000
KS ci ratio: 1.867750e-02	ci left: 8.072482e-01	ci right 8.225679e-01	k: 8150	n:10000
CTNND1   10000 perm   2 sec   (4802 perm/sec)   p_kst 8.150000e-01   p_cons 8.783000e-01   p_joint 8.989000e-01

Outputting figure to mutsig2_images.part000000000044/CTNND1.6_2983_10000_0.815_0.8783_0.8989.png
                gene_name: CTNND1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 31 percent done.
CSNK1A1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.103201e-02	ci left: 6.050792e-01	ci right 6.242539e-01	k: 6147	n:10000
Cons ci ratio: 1.522255e-02	ci left: 8.622295e-01	ci right 8.755548e-01	k: 8690	n:10000
KS ci ratio: 5.011454e-02	ci left: 3.699753e-01	ci right 3.890950e-01	k: 3795	n:10000
CSNK1A1L   10000 perm   2 sec   (5773 perm/sec)   p_kst 3.795000e-01   p_cons 8.690000e-01   p_joint 6.147000e-01

Outputting figure to mutsig2_images.part000000000044/CSNK1A1L.5_1018_10000_0.3795_0.869_0.6147.png
                gene_name: CSNK1A1L
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.62 

Current progress: 33 percent done.
CSRNP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.023915e-02	ci left: 9.312316e-01	ci right 9.409125e-01	k: 9362	n:10000
KS ci ratio: 7.724826e-03	ci left: 9.587987e-01	ci right 9.663288e-01	k: 9627	n:10000
CSRNP3   10000 perm   2 sec   (5643 perm/sec)   p_kst 9.627000e-01   p_cons 9.362000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSRNP3.5_1774_10000_0.9627_0.9362_1.png
                gene_name: CSRNP3
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
CTHRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.031466e-02	ci left: 2.286929e-01	ci right 2.454605e-01	k: 2370	n:10000
Cons ci ratio: 5.783299e-02	ci left: 3.056030e-01	ci right 3.239050e-01	k: 3147	n:10000
KS ci ratio: 7.204855e-02	ci left: 2.201034e-01	ci right 2.366552e-01	k: 2283	n:10000
CTHRC1   10000 perm   2 sec   (6016 perm/sec)   p_kst 2.283000e-01   p_cons 3.147000e-01   p_joint 2.370000e-01

Outputting figure to mutsig2_images.part000000000044/CTHRC1.5_748_10000_0.2283_0.3147_0.237.png
                gene_name: CTHRC1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 36 percent done.
CTNNBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.423184e-01	ci left: 2.240510e-02	ci right 2.867545e-02	k: 254	n:10000
Cons ci ratio: 4.898462e-02	ci left: 3.807221e-01	ci right 3.999419e-01	k: 3903	n:10000
KS ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
CTNNBL1   10000 perm   2 sec   (5572 perm/sec)   p_kst 1.160000e-02   p_cons 3.903000e-01   p_joint 2.540000e-02

Joint ci ratio: 1.636116e-01	ci left: 2.561344e-02	ci right 3.022518e-02	k: 557	n:20000
Cons ci ratio: 3.383911e-02	ci left: 3.946960e-01	ci right 4.083326e-01	k: 8030	n:20000
KS ci ratio: 2.401172e-01	ci left: 1.157027e-02	ci right 1.477358e-02	k: 262	n:20000
CTNNBL1   20000 perm   4 sec   (5004 perm/sec)   p_kst 1.310000e-02   p_cons 4.015000e-01   p_joint 2.785000e-02

Joint ci ratio: 1.629124e-01	ci left: 1.738915e-02	ci right 2.050500e-02	k: 567	n:30000
Cons ci ratio: 2.753481e-02	ci left: 3.976088e-01	ci right 4.087433e-01	k: 12095	n:30000
KS ci ratio: 1.961824e-01	ci left: 1.184400e-02	ci right 1.445155e-02	k: 393	n:30000
CTNNBL1   30000 perm   6 sec   (4804 perm/sec)   p_kst 1.310000e-02   p_cons 4.031667e-01   p_joint 1.890000e-02

Joint ci ratio: 1.395299e-01	ci left: 1.799839e-02	ci right 2.072202e-02	k: 773	n:40000
Cons ci ratio: 2.384705e-02	ci left: 3.983376e-01	ci right 4.079765e-01	k: 16126	n:40000
KS ci ratio: 1.643358e-01	ci left: 1.287150e-02	ci right 1.519984e-02	k: 560	n:40000
CTNNBL1   40000 perm   9 sec   (4672 perm/sec)   p_kst 1.400000e-02   p_cons 4.031500e-01   p_joint 1.932500e-02

Joint ci ratio: 1.150784e-01	ci left: 2.137335e-02	ci right 2.400247e-02	k: 1133	n:50000
Cons ci ratio: 2.134606e-02	ci left: 3.984768e-01	ci right 4.070945e-01	k: 20139	n:50000
KS ci ratio: 1.495210e-01	ci left: 1.254531e-02	ci right 1.459174e-02	k: 677	n:50000
CTNNBL1   50000 perm   11 sec   (4549 perm/sec)   p_kst 1.354000e-02   p_cons 4.027800e-01   p_joint 2.266000e-02

Joint ci ratio: 1.094000e-01	ci left: 1.980271e-02	ci right 2.211062e-02	k: 1256	n:60000
Cons ci ratio: 1.951998e-02	ci left: 3.980234e-01	ci right 4.058861e-01	k: 24117	n:60000
KS ci ratio: 1.368008e-01	ci left: 1.257576e-02	ci right 1.443841e-02	k: 809	n:60000
CTNNBL1   60000 perm   13 sec   (4446 perm/sec)   p_kst 1.348333e-02   p_cons 4.019500e-01   p_joint 2.093333e-02

Joint ci ratio: 1.076640e-01	ci left: 1.758416e-02	ci right 1.959888e-02	k: 1300	n:70000
Cons ci ratio: 1.804391e-02	ci left: 3.990638e-01	ci right 4.063443e-01	k: 28189	n:70000
KS ci ratio: 1.257789e-01	ci left: 1.282426e-02	ci right 1.455926e-02	k: 957	n:70000
CTNNBL1   70000 perm   16 sec   (4357 perm/sec)   p_kst 1.367143e-02   p_cons 4.027000e-01   p_joint 1.857143e-02

Joint ci ratio: 9.846874e-02	ci left: 1.846764e-02	ci right 2.039243e-02	k: 1553	n:80000
Cons ci ratio: 1.686106e-02	ci left: 3.997981e-01	ci right 4.066089e-01	k: 32256	n:80000
KS ci ratio: 1.173763e-01	ci left: 1.294233e-02	ci right 1.456821e-02	k: 1099	n:80000
CTNNBL1   80000 perm   19 sec   (4276 perm/sec)   p_kst 1.373750e-02   p_cons 4.032000e-01   p_joint 1.941250e-02

Joint ci ratio: 9.238694e-02	ci left: 1.870431e-02	ci right 2.052684e-02	k: 1764	n:90000
Cons ci ratio: 1.588580e-02	ci left: 4.003257e-01	ci right 4.067472e-01	k: 36318	n:90000
KS ci ratio: 1.098785e-01	ci left: 1.317769e-02	ci right 1.472054e-02	k: 1254	n:90000
CTNNBL1   90000 perm   21 sec   (4200 perm/sec)   p_kst 1.393333e-02   p_cons 4.035333e-01   p_joint 1.960000e-02

Joint ci ratio: 9.237285e-02	ci left: 1.687221e-02	ci right 1.851593e-02	k: 1768	n:100000
Cons ci ratio: 1.506009e-02	ci left: 4.008267e-01	ci right 4.069189e-01	k: 40387	n:100000
KS ci ratio: 1.039171e-01	ci left: 1.330041e-02	ci right 1.476798e-02	k: 1402	n:100000
CTNNBL1   100000 perm   24 sec   (4129 perm/sec)   p_kst 1.402000e-02   p_cons 4.038700e-01   p_joint 1.768000e-02

Joint ci ratio: 8.663264e-02	ci left: 1.748051e-02	ci right 1.907231e-02	k: 2009	n:110000
Cons ci ratio: 1.435945e-02	ci left: 4.009620e-01	ci right 4.067703e-01	k: 44425	n:110000
KS ci ratio: 9.867015e-02	ci left: 1.344701e-02	ci right 1.485150e-02	k: 1555	n:110000
CTNNBL1   110000 perm   27 sec   (4061 perm/sec)   p_kst 1.413636e-02   p_cons 4.038636e-01   p_joint 1.826364e-02

Outputting figure to mutsig2_images.part000000000044/CTNNBL1.5_1756_110000_0.014136_0.40386_0.018264.png
                gene_name: CTNNBL1
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 38 percent done.
CSE1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.297202e-02	ci left: 5.758711e-01	ci right 5.952790e-01	k: 5856	n:10000
KS ci ratio: 2.511240e-02	ci left: 6.999874e-01	ci right 7.178907e-01	k: 7090	n:10000
CSE1L   10000 perm   2 sec   (5500 perm/sec)   p_kst 7.090000e-01   p_cons 5.856000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSE1L.4_3012_10000_0.709_0.5856_1.png
                gene_name: CSE1L
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
CSNK1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.665240e-01	ci left: 4.811345e-02	ci right 5.694952e-02	k: 524	n:10000
Cons ci ratio: 1.085277e-01	ci left: 1.091029e-01	ci right 1.217221e-01	k: 1153	n:10000
KS ci ratio: 1.146865e-01	ci left: 9.857012e-02	ci right 1.106613e-01	k: 1045	n:10000
CSNK1D   10000 perm   2 sec   (5553 perm/sec)   p_kst 1.045000e-01   p_cons 1.153000e-01   p_joint 5.240000e-02

Joint ci ratio: 8.999049e-02	ci left: 8.273747e-02	ci right 9.058319e-02	k: 1732	n:20000
Cons ci ratio: 7.744556e-02	ci left: 1.091353e-01	ci right 1.179774e-01	k: 2270	n:20000
KS ci ratio: 8.124902e-02	ci left: 9.999854e-02	ci right 1.085169e-01	k: 2084	n:20000
CSNK1D   20000 perm   4 sec   (5012 perm/sec)   p_kst 1.042000e-01   p_cons 1.135000e-01   p_joint 8.660000e-02

Outputting figure to mutsig2_images.part000000000044/CSNK1D.4_1321_20000_0.1042_0.1135_0.0866.png
                gene_name: CSNK1D
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.091 

Current progress: 41 percent done.
CSNK2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.721990e-02	ci left: 3.982459e-01	ci right 4.176078e-01	k: 4079	n:10000
Cons ci ratio: 6.139518e-02	ci left: 2.806233e-01	ci right 2.984994e-01	k: 2895	n:10000
KS ci ratio: 5.191724e-02	ci left: 3.535663e-01	ci right 3.725136e-01	k: 3630	n:10000
CSNK2A1   10000 perm   2 sec   (5788 perm/sec)   p_kst 3.630000e-01   p_cons 2.895000e-01   p_joint 4.079000e-01

Outputting figure to mutsig2_images.part000000000044/CSNK2A1.4_1224_10000_0.363_0.2895_0.4079.png
                gene_name: CSNK2A1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 43 percent done.
CSRNP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.081881e-02	ci left: 7.717500e-01	ci right 7.880866e-01	k: 7800	n:10000
Cons ci ratio: 3.095449e-03	ci left: 9.921711e-01	ci right 9.953309e-01	k: 9939	n:10000
KS ci ratio: 3.276867e-02	ci left: 5.788806e-01	ci right 5.982678e-01	k: 5886	n:10000
CSRNP1   10000 perm   2 sec   (6019 perm/sec)   p_kst 5.886000e-01   p_cons 9.939000e-01   p_joint 7.800000e-01

Outputting figure to mutsig2_images.part000000000044/CSRNP1.4_1786_10000_0.5886_0.9939_0.78.png
                gene_name: CSRNP1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 45 percent done.
CSRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.130334e-02	ci left: 9.179100e-01	ci right 9.284419e-01	k: 9233	n:10000
KS ci ratio: 4.853484e-02	ci left: 3.851018e-01	ci right 4.043596e-01	k: 3947	n:10000
CSRP2   10000 perm   2 sec   (6459 perm/sec)   p_kst 3.947000e-01   p_cons 9.233000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSRP2.4_602_10000_0.3947_0.9233_1.png
                gene_name: CSRP2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
CSTF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.182775e-03	ci left: 9.639407e-01	ci right 9.709836e-01	k: 9676	n:10000
KS ci ratio: 1.464252e-02	ci left: 8.710161e-01	ci right 8.839631e-01	k: 8776	n:10000
CSTF3   10000 perm   2 sec   (5343 perm/sec)   p_kst 8.776000e-01   p_cons 9.676000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSTF3.4_2331_10000_0.8776_0.9676_1.png
                gene_name: CSTF3
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
CTAGE6P
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
Cons ci ratio: 2.575415e-03	ci left: 9.943270e-01	ci right 9.969714e-01	k: 9958	n:10000
KS ci ratio: 4.962703e-01	ci left: 4.669135e-03	ci right 7.828899e-03	k: 61	n:10000
CTAGE6P   10000 perm   2 sec   (5701 perm/sec)   p_kst 6.100000e-03   p_cons 9.958000e-01   p_joint 4.270000e-02

Joint ci ratio: 1.573407e-01	ci left: 2.772743e-02	ci right 3.251047e-02	k: 601	n:20000
Cons ci ratio: 1.894328e-03	ci left: 9.943614e-01	ci right 9.962902e-01	k: 19908	n:20000
KS ci ratio: 3.509248e-01	ci left: 5.113783e-03	ci right 7.333458e-03	k: 123	n:20000
CTAGE6P   20000 perm   4 sec   (5111 perm/sec)   p_kst 6.150000e-03   p_cons 9.954000e-01   p_joint 3.005000e-02

Joint ci ratio: 1.268135e-01	ci left: 2.890608e-02	ci right 3.285213e-02	k: 925	n:30000
Cons ci ratio: 1.527160e-03	ci left: 9.946759e-01	ci right 9.962257e-01	k: 29865	n:30000
KS ci ratio: 2.912969e-01	ci left: 5.126645e-03	ci right 6.904401e-03	k: 179	n:30000
CTAGE6P   30000 perm   6 sec   (4875 perm/sec)   p_kst 5.966667e-03   p_cons 9.955000e-01   p_joint 3.083333e-02

Joint ci ratio: 1.220256e-01	ci left: 2.361333e-02	ci right 2.670613e-02	k: 1005	n:40000
Cons ci ratio: 1.353972e-03	ci left: 9.945532e-01	ci right 9.959234e-01	k: 39811	n:40000
KS ci ratio: 2.594370e-01	ci left: 4.939039e-03	ci right 6.434098e-03	k: 226	n:40000
CTAGE6P   40000 perm   8 sec   (4725 perm/sec)   p_kst 5.650000e-03   p_cons 9.952750e-01   p_joint 2.512500e-02

Joint ci ratio: 1.025001e-01	ci left: 2.696141e-02	ci right 2.989368e-02	k: 1420	n:50000
Cons ci ratio: 1.088380e-03	ci left: 9.955994e-01	ci right 9.967017e-01	k: 49809	n:50000
KS ci ratio: 2.336056e-01	ci left: 4.945911e-03	ci right 6.272480e-03	k: 279	n:50000
CTAGE6P   50000 perm   11 sec   (4608 perm/sec)   p_kst 5.580000e-03   p_cons 9.961800e-01   p_joint 2.840000e-02

Joint ci ratio: 9.081620e-02	ci left: 2.874727e-02	ci right 3.149843e-02	k: 1806	n:60000
Cons ci ratio: 9.861721e-04	ci left: 9.957100e-01	ci right 9.967077e-01	k: 59774	n:60000
KS ci ratio: 2.161832e-01	ci left: 4.860829e-03	ci right 6.054440e-03	k: 326	n:60000
CTAGE6P   60000 perm   13 sec   (4510 perm/sec)   p_kst 5.433333e-03   p_cons 9.962333e-01   p_joint 3.010000e-02

Joint ci ratio: 9.146009e-02	ci left: 2.440065e-02	ci right 2.675319e-02	k: 1789	n:70000
Cons ci ratio: 9.063666e-04	ci left: 9.958067e-01	ci right 9.967228e-01	k: 69740	n:70000
KS ci ratio: 1.979418e-01	ci left: 5.019877e-03	ci right 6.135994e-03	k: 389	n:70000
CTAGE6P   70000 perm   16 sec   (4422 perm/sec)   p_kst 5.557143e-03   p_cons 9.962857e-01   p_joint 2.555714e-02

Joint ci ratio: 8.272688e-02	ci left: 2.616946e-02	ci right 2.843999e-02	k: 2183	n:80000
Cons ci ratio: 8.416967e-04	ci left: 9.958941e-01	ci right 9.967443e-01	k: 79707	n:80000
KS ci ratio: 1.850981e-01	ci left: 5.058868e-03	ci right 6.102480e-03	k: 445	n:80000
CTAGE6P   80000 perm   18 sec   (4340 perm/sec)   p_kst 5.562500e-03   p_cons 9.963375e-01   p_joint 2.728750e-02

Joint ci ratio: 8.031058e-02	ci left: 2.475220e-02	ci right 2.683407e-02	k: 2320	n:90000
Cons ci ratio: 8.795819e-04	ci left: 9.950408e-01	ci right 9.959268e-01	k: 89595	n:90000
KS ci ratio: 1.744686e-01	ci left: 5.091018e-03	ci right 6.074595e-03	k: 501	n:90000
CTAGE6P   90000 perm   21 sec   (4260 perm/sec)   p_kst 5.566667e-03   p_cons 9.955000e-01   p_joint 2.577778e-02

Joint ci ratio: 7.908403e-02	ci left: 2.303081e-02	ci right 2.493693e-02	k: 2397	n:100000
Cons ci ratio: 8.371267e-04	ci left: 9.950341e-01	ci right 9.958768e-01	k: 99547	n:100000
KS ci ratio: 1.659315e-01	ci left: 5.089348e-03	ci right 6.019684e-03	k: 554	n:100000
CTAGE6P   100000 perm   24 sec   (4185 perm/sec)   p_kst 5.540000e-03   p_cons 9.954700e-01   p_joint 2.397000e-02

Joint ci ratio: 7.508062e-02	ci left: 2.327313e-02	ci right 2.509753e-02	k: 2659	n:110000
Cons ci ratio: 7.946309e-04	ci left: 9.950961e-01	ci right 9.958957e-01	k: 109506	n:110000
KS ci ratio: 1.578848e-01	ci left: 5.132607e-03	ci right 6.021040e-03	k: 612	n:110000
CTAGE6P   110000 perm   27 sec   (4111 perm/sec)   p_kst 5.563636e-03   p_cons 9.955091e-01   p_joint 2.417273e-02

Joint ci ratio: 7.086258e-02	ci left: 2.398476e-02	ci right 2.575497e-02	k: 2983	n:120000
Cons ci ratio: 7.572564e-04	ci left: 9.951570e-01	ci right 9.959187e-01	k: 119466	n:120000
KS ci ratio: 1.517034e-01	ci left: 5.113427e-03	ci right 5.960738e-03	k: 663	n:120000
CTAGE6P   120000 perm   30 sec   (4044 perm/sec)   p_kst 5.525000e-03   p_cons 9.955500e-01   p_joint 2.485833e-02

Joint ci ratio: 6.794977e-02	ci left: 2.411268e-02	ci right 2.581629e-02	k: 3244	n:130000
Cons ci ratio: 7.309567e-04	ci left: 9.951290e-01	ci right 9.958640e-01	k: 129416	n:130000
KS ci ratio: 1.459903e-01	ci left: 5.112597e-03	ci right 5.925083e-03	k: 716	n:130000
CTAGE6P   130000 perm   33 sec   (3982 perm/sec)   p_kst 5.507692e-03   p_cons 9.955077e-01   p_joint 2.495385e-02

Joint ci ratio: 6.251058e-02	ci left: 2.646670e-02	ci right 2.818153e-02	k: 3824	n:140000
Cons ci ratio: 7.043685e-04	ci left: 9.951428e-01	ci right 9.958507e-01	k: 139371	n:140000
KS ci ratio: 1.396966e-01	ci left: 5.202014e-03	ci right 5.990104e-03	k: 782	n:140000
CTAGE6P   140000 perm   36 sec   (3919 perm/sec)   p_kst 5.585714e-03   p_cons 9.955071e-01   p_joint 2.731429e-02

Joint ci ratio: 6.029435e-02	ci left: 2.657969e-02	ci right 2.823865e-02	k: 4110	n:150000
Cons ci ratio: 6.825078e-04	ci left: 9.951274e-01	ci right 9.958132e-01	k: 149322	n:150000
KS ci ratio: 1.346316e-01	ci left: 5.241496e-03	ci right 6.004471e-03	k: 842	n:150000
CTAGE6P   150000 perm   39 sec   (3859 perm/sec)   p_kst 5.613333e-03   p_cons 9.954800e-01   p_joint 2.740000e-02

Joint ci ratio: 5.838707e-02	ci left: 2.659940e-02	ci right 2.820529e-02	k: 4383	n:160000
Cons ci ratio: 6.625448e-04	ci left: 9.951144e-01	ci right 9.957799e-01	k: 159273	n:160000
KS ci ratio: 1.308108e-01	ci left: 5.216022e-03	ci right 5.952067e-03	k: 892	n:160000
CTAGE6P   160000 perm   42 sec   (3802 perm/sec)   p_kst 5.575000e-03   p_cons 9.954563e-01   p_joint 2.739375e-02

Joint ci ratio: 5.682592e-02	ci left: 2.645508e-02	ci right 2.800815e-02	k: 4628	n:170000
Cons ci ratio: 6.454709e-04	ci left: 9.950851e-01	ci right 9.957332e-01	k: 169221	n:170000
KS ci ratio: 1.272979e-01	ci left: 5.193816e-03	ci right 5.905558e-03	k: 942	n:170000
CTAGE6P   170000 perm   45 sec   (3749 perm/sec)   p_kst 5.541176e-03   p_cons 9.954176e-01   p_joint 2.722353e-02

Joint ci ratio: 5.593452e-02	ci left: 2.581766e-02	ci right 2.730876e-02	k: 4780	n:180000
Cons ci ratio: 6.265669e-04	ci left: 9.951052e-01	ci right 9.957342e-01	k: 179177	n:180000
KS ci ratio: 1.244321e-01	ci left: 5.142010e-03	ci right 5.829620e-03	k: 986	n:180000
CTAGE6P   180000 perm   49 sec   (3697 perm/sec)   p_kst 5.477778e-03   p_cons 9.954278e-01   p_joint 2.655556e-02

Joint ci ratio: 5.397538e-02	ci left: 2.628098e-02	ci right 2.774402e-02	k: 5131	n:190000
Cons ci ratio: 6.092295e-04	ci left: 9.951235e-01	ci right 9.957349e-01	k: 189133	n:190000
KS ci ratio: 1.206966e-01	ci left: 5.187698e-03	ci right 5.859104e-03	k: 1048	n:190000
CTAGE6P   190000 perm   52 sec   (3647 perm/sec)   p_kst 5.515789e-03   p_cons 9.954368e-01   p_joint 2.700526e-02

Joint ci ratio: 5.257923e-02	ci left: 2.632857e-02	ci right 2.775519e-02	k: 5407	n:200000
Cons ci ratio: 5.952110e-04	ci left: 9.951091e-01	ci right 9.957064e-01	k: 199083	n:200000
KS ci ratio: 1.172254e-01	ci left: 5.233947e-03	ci right 5.890508e-03	k: 1111	n:200000
CTAGE6P   200000 perm   56 sec   (3598 perm/sec)   p_kst 5.555000e-03   p_cons 9.954150e-01   p_joint 2.703500e-02

Joint ci ratio: 5.139773e-02	ci left: 2.625920e-02	ci right 2.764914e-02	k: 5659	n:210000
Cons ci ratio: 5.839163e-04	ci left: 9.950669e-01	ci right 9.956526e-01	k: 209027	n:210000
KS ci ratio: 1.149761e-01	ci left: 5.188144e-03	ci right 5.825623e-03	k: 1155	n:210000
CTAGE6P   210000 perm   59 sec   (3550 perm/sec)   p_kst 5.500000e-03   p_cons 9.953667e-01   p_joint 2.694762e-02

Joint ci ratio: 5.020090e-02	ci left: 2.629075e-02	ci right 2.764902e-02	k: 5932	n:220000
Cons ci ratio: 5.220199e-04	ci left: 9.958494e-01	ci right 9.963737e-01	k: 219146	n:220000
KS ci ratio: 1.125218e-01	ci left: 5.177540e-03	ci right 5.799235e-03	k: 1206	n:220000
CTAGE6P   220000 perm   63 sec   (3503 perm/sec)   p_kst 5.481818e-03   p_cons 9.961182e-01   p_joint 2.696364e-02

Joint ci ratio: 4.946204e-02	ci left: 2.592471e-02	ci right 2.724378e-02	k: 6113	n:230000
Cons ci ratio: 5.102981e-04	ci left: 9.958592e-01	ci right 9.963717e-01	k: 229108	n:230000
KS ci ratio: 1.097805e-01	ci left: 5.210278e-03	ci right 5.819676e-03	k: 1267	n:230000
CTAGE6P   230000 perm   67 sec   (3457 perm/sec)   p_kst 5.508696e-03   p_cons 9.961217e-01   p_joint 2.657826e-02

Joint ci ratio: 4.880240e-02	ci left: 2.553990e-02	ci right 2.682158e-02	k: 6282	n:240000
Cons ci ratio: 4.955486e-04	ci left: 9.959285e-01	ci right 9.964261e-01	k: 239084	n:240000
KS ci ratio: 1.068267e-01	ci left: 5.281014e-03	ci right 5.881022e-03	k: 1338	n:240000
CTAGE6P   240000 perm   70 sec   (3412 perm/sec)   p_kst 5.575000e-03   p_cons 9.961833e-01   p_joint 2.617500e-02

Joint ci ratio: 4.748511e-02	ci left: 2.590552e-02	ci right 2.716949e-02	k: 6633	n:250000
Cons ci ratio: 5.334219e-04	ci left: 9.951228e-01	ci right 9.956576e-01	k: 248849	n:250000
KS ci ratio: 1.048118e-01	ci left: 5.272267e-03	ci right 5.859285e-03	k: 1390	n:250000
CTAGE6P   250000 perm   74 sec   (3365 perm/sec)   p_kst 5.560000e-03   p_cons 9.953960e-01   p_joint 2.653200e-02

Joint ci ratio: 4.622125e-02	ci left: 2.629667e-02	ci right 2.754467e-02	k: 6998	n:260000
Cons ci ratio: 5.254529e-04	ci left: 9.950849e-01	ci right 9.956116e-01	k: 258792	n:260000
KS ci ratio: 1.030504e-01	ci left: 5.249300e-03	ci right 5.823345e-03	k: 1438	n:260000
CTAGE6P   260000 perm   78 sec   (3323 perm/sec)   p_kst 5.530769e-03   p_cons 9.953538e-01   p_joint 2.691538e-02

Joint ci ratio: 4.640514e-02	ci left: 2.515032e-02	ci right 2.634878e-02	k: 6951	n:270000
Cons ci ratio: 5.147014e-04	ci left: 9.951071e-01	ci right 9.956229e-01	k: 268750	n:270000
KS ci ratio: 1.011358e-01	ci left: 5.253385e-03	ci right 5.816568e-03	k: 1493	n:270000
CTAGE6P   270000 perm   82 sec   (3280 perm/sec)   p_kst 5.529630e-03   p_cons 9.953704e-01   p_joint 2.574444e-02

Joint ci ratio: 4.523668e-02	ci left: 2.552672e-02	ci right 2.671169e-02	k: 7312	n:280000
Cons ci ratio: 5.049701e-04	ci left: 9.951204e-01	ci right 9.956264e-01	k: 278706	n:280000
KS ci ratio: 9.945338e-02	ci left: 5.243336e-03	ci right 5.795546e-03	k: 1544	n:280000
CTAGE6P   280000 perm   86 sec   (3240 perm/sec)   p_kst 5.514286e-03   p_cons 9.953786e-01   p_joint 2.611429e-02

Outputting figure to mutsig2_images.part000000000044/CTAGE6P.4_2338_280000_0.0055143_0.99538_0.026114.png
                gene_name: CTAGE6P
               theta_stop: 0.099 
                    nperm: 280000 
                     p_ks: 0.0055 
        ci_ks_bounds_left: 0.0052 
       ci_ks_bounds_right: 0.0058 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.027 

Current progress: 50 percent done.
CTBS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.287309e-02	ci left: 7.373475e-01	ci right 7.545091e-01	k: 7460	n:10000
Cons ci ratio: 5.396524e-02	ci left: 3.359772e-01	ci right 3.547130e-01	k: 3453	n:10000
KS ci ratio: 2.292739e-02	ci left: 7.364378e-01	ci right 7.536193e-01	k: 7451	n:10000
CTBS   10000 perm   2 sec   (5835 perm/sec)   p_kst 7.451000e-01   p_cons 3.453000e-01   p_joint 7.460000e-01

Outputting figure to mutsig2_images.part000000000044/CTBS.4_1186_10000_0.7451_0.3453_0.746.png
                gene_name: CTBS
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 52 percent done.
CSF1R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.715309e-02	ci left: 1.331568e-01	ci right 1.468536e-01	k: 1399	n:10000
Cons ci ratio: 1.174650e-01	ci left: 9.428457e-02	ci right 1.061495e-01	k: 1001	n:10000
KS ci ratio: 4.970216e-02	ci left: 3.738555e-01	ci right 3.930125e-01	k: 3834	n:10000
CSF1R   10000 perm   2 sec   (5367 perm/sec)   p_kst 3.834000e-01   p_cons 1.001000e-01   p_joint 1.399000e-01

Joint ci ratio: 5.831331e-02	ci left: 1.788982e-01	ci right 1.896937e-01	k: 3685	n:20000
Cons ci ratio: 8.505721e-02	ci left: 9.190214e-02	ci right 1.001157e-01	k: 1919	n:20000
KS ci ratio: 3.491155e-02	ci left: 3.798429e-01	ci right 3.933900e-01	k: 7732	n:20000
CSF1R   20000 perm   4 sec   (4879 perm/sec)   p_kst 3.866000e-01   p_cons 9.595000e-02   p_joint 1.842500e-01

Outputting figure to mutsig2_images.part000000000044/CSF1R.3_3003_20000_0.3866_0.09595_0.18425.png
                gene_name: CSF1R
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 53 percent done.
CSGALNACT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.513917e-02	ci left: 5.445937e-01	ci right 5.641746e-01	k: 5544	n:10000
KS ci ratio: 2.623040e-02	ci left: 6.815364e-01	ci right 6.997525e-01	k: 6907	n:10000
CSGALNACT2   10000 perm   2 sec   (6018 perm/sec)   p_kst 6.907000e-01   p_cons 5.544000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSGALNACT2.3_1657_10000_0.6907_0.5544_1.png
                gene_name: CSGALNACT2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
CSK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.817119e-02	ci left: 3.886858e-01	ci right 4.079734e-01	k: 3983	n:10000
Cons ci ratio: 8.595771e-03	ci left: 9.499184e-01	ci right 9.582145e-01	k: 9542	n:10000
KS ci ratio: 5.853744e-02	ci left: 3.004459e-01	ci right 3.186652e-01	k: 3095	n:10000
CSK   10000 perm   2 sec   (6126 perm/sec)   p_kst 3.095000e-01   p_cons 9.542000e-01   p_joint 3.983000e-01

Outputting figure to mutsig2_images.part000000000044/CSK.3_1401_10000_0.3095_0.9542_0.3983.png
                gene_name: CSK
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 57 percent done.
CSNK1G3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.655961e-02	ci left: 8.414233e-01	ci right 8.555730e-01	k: 8486	n:10000
Cons ci ratio: 2.474777e-02	ci left: 7.060407e-01	ci right 7.238339e-01	k: 7150	n:10000
KS ci ratio: 2.909192e-02	ci left: 6.353290e-01	ci right 6.541866e-01	k: 6448	n:10000
CSNK1G3   10000 perm   2 sec   (6098 perm/sec)   p_kst 6.448000e-01   p_cons 7.150000e-01   p_joint 8.486000e-01

Outputting figure to mutsig2_images.part000000000044/CSNK1G3.3_1420_10000_0.6448_0.715_0.8486.png
                gene_name: CSNK1G3
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 59 percent done.
CST9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.569037e-02	ci left: 4.141877e-01	ci right 4.336567e-01	k: 4239	n:10000
Cons ci ratio: 5.074812e-02	ci left: 3.641064e-01	ci right 3.831672e-01	k: 3736	n:10000
KS ci ratio: 7.172305e-02	ci left: 2.216827e-01	ci right 2.382749e-01	k: 2299	n:10000
CST9   10000 perm   2 sec   (6634 perm/sec)   p_kst 2.299000e-01   p_cons 3.736000e-01   p_joint 4.239000e-01

Outputting figure to mutsig2_images.part000000000044/CST9.3_488_10000_0.2299_0.3736_0.4239.png
                gene_name: CST9
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 60 percent done.
CTAGE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.288625e-02	ci left: 4.453040e-01	ci right 4.649221e-01	k: 4551	n:10000
Cons ci ratio: 8.558480e-02	ci left: 1.659274e-01	ci right 1.808634e-01	k: 1733	n:10000
KS ci ratio: 1.726883e-02	ci left: 8.301215e-01	ci right 8.446814e-01	k: 8375	n:10000
CTAGE1   10000 perm   2 sec   (5734 perm/sec)   p_kst 8.375000e-01   p_cons 1.733000e-01   p_joint 4.551000e-01

Outputting figure to mutsig2_images.part000000000044/CTAGE1.3_2242_10000_0.8375_0.1733_0.4551.png
                gene_name: CTAGE1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 62 percent done.
CTAGE5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.258492e-02	ci left: 4.487971e-01	ci right 4.684270e-01	k: 4586	n:10000
Cons ci ratio: 3.718438e-02	ci left: 5.164573e-01	ci right 5.361274e-01	k: 5263	n:10000
KS ci ratio: 8.689119e-02	ci left: 1.617022e-01	ci right 1.764911e-01	k: 1690	n:10000
CTAGE5   10000 perm   2 sec   (5476 perm/sec)   p_kst 1.690000e-01   p_cons 5.263000e-01   p_joint 4.586000e-01

Outputting figure to mutsig2_images.part000000000044/CTAGE5.3_2542_10000_0.169_0.5263_0.4586.png
                gene_name: CTAGE5
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 64 percent done.
CTDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.941142e-02	ci left: 2.941996e-01	ci right 3.123152e-01	k: 3032	n:10000
Cons ci ratio: 1.175301e-01	ci left: 9.418721e-02	ci right 1.060469e-01	k: 1000	n:10000
KS ci ratio: 4.736681e-02	ci left: 3.967519e-01	ci right 4.161027e-01	k: 4064	n:10000
CTDP1   10000 perm   2 sec   (5544 perm/sec)   p_kst 4.064000e-01   p_cons 1.000000e-01   p_joint 3.032000e-01

Joint ci ratio: 6.620319e-02	ci left: 1.441899e-01	ci right 1.541124e-01	k: 2982	n:20000
Cons ci ratio: 8.633138e-02	ci left: 8.940144e-02	ci right 9.751720e-02	k: 1868	n:20000
KS ci ratio: 3.392021e-02	ci left: 3.935494e-01	ci right 4.071796e-01	k: 8007	n:20000
CTDP1   20000 perm   4 sec   (4963 perm/sec)   p_kst 4.003500e-01   p_cons 9.340000e-02   p_joint 1.491000e-01

Outputting figure to mutsig2_images.part000000000044/CTDP1.3_2938_20000_0.40035_0.0934_0.1491.png
                gene_name: CTDP1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 66 percent done.
CTDSPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.956342e-02	ci left: 6.278885e-01	ci right 6.468314e-01	k: 6374	n:10000
KS ci ratio: 2.378481e-02	ci left: 7.220913e-01	ci right 7.395740e-01	k: 7309	n:10000
CTDSPL   10000 perm   2 sec   (6128 perm/sec)   p_kst 7.309000e-01   p_cons 6.374000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CTDSPL.3_863_10000_0.7309_0.6374_1.png
                gene_name: CTDSPL
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
CTDSPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.753382e-02	ci left: 6.602828e-01	ci right 6.788183e-01	k: 6696	n:10000
KS ci ratio: 2.531331e-02	ci left: 6.966589e-01	ci right 7.146211e-01	k: 7057	n:10000
CTDSPL2   10000 perm   2 sec   (5853 perm/sec)   p_kst 7.057000e-01   p_cons 6.696000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CTDSPL2.3_1449_10000_0.7057_0.6696_1.png
                gene_name: CTDSPL2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
CSDA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.930639e-02	ci left: 7.968933e-01	ci right 8.125288e-01	k: 8048	n:10000
Cons ci ratio: 4.226904e-02	ci left: 4.524903e-01	ci right 4.721317e-01	k: 4623	n:10000
KS ci ratio: 3.080322e-02	ci left: 6.085946e-01	ci right 6.277365e-01	k: 6182	n:10000
CSDA   10000 perm   2 sec   (6378 perm/sec)   p_kst 6.182000e-01   p_cons 4.623000e-01   p_joint 8.048000e-01

Outputting figure to mutsig2_images.part000000000044/CSDA.2_1155_10000_0.6182_0.4623_0.8048.png
                gene_name: CSDA
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 71 percent done.
CSF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.981480e-02	ci left: 7.884733e-01	ci right 8.043536e-01	k: 7965	n:10000
Cons ci ratio: 2.443843e-02	ci left: 7.111875e-01	ci right 7.288841e-01	k: 7201	n:10000
KS ci ratio: 4.402797e-02	ci left: 4.323342e-01	ci right 4.518996e-01	k: 4421	n:10000
CSF1   10000 perm   2 sec   (6207 perm/sec)   p_kst 4.421000e-01   p_cons 7.201000e-01   p_joint 7.965000e-01

Outputting figure to mutsig2_images.part000000000044/CSF1.2_1697_10000_0.4421_0.7201_0.7965.png
                gene_name: CSF1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 72 percent done.
CSH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.792921e-02	ci left: 5.065519e-01	ci right 5.262386e-01	k: 5164	n:10000
Cons ci ratio: 1.126523e-01	ci left: 1.018840e-01	ci right 1.141454e-01	k: 1079	n:10000
KS ci ratio: 4.983906e-02	ci left: 3.725620e-01	ci right 3.917067e-01	k: 3821	n:10000
CSH1   10000 perm   2 sec   (6610 perm/sec)   p_kst 3.821000e-01   p_cons 1.079000e-01   p_joint 5.164000e-01

Joint ci ratio: 6.348666e-02	ci left: 1.549932e-01	ci right 1.652058e-01	k: 3201	n:20000
Cons ci ratio: 7.404775e-02	ci left: 1.183306e-01	ci right 1.274793e-01	k: 2457	n:20000
KS ci ratio: 3.525626e-02	ci left: 3.752090e-01	ci right 3.887254e-01	k: 7639	n:20000
CSH1   20000 perm   3 sec   (5832 perm/sec)   p_kst 3.819500e-01   p_cons 1.228500e-01   p_joint 1.600500e-01

Outputting figure to mutsig2_images.part000000000044/CSH1.2_923_20000_0.38195_0.12285_0.16005.png
                gene_name: CSH1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 74 percent done.
CSNK1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.820218e-02	ci left: 6.495130e-01	ci right 6.681944e-01	k: 6589	n:10000
Cons ci ratio: 1.558433e-01	ci left: 5.484605e-02	ci right 6.421259e-02	k: 594	n:10000
KS ci ratio: 7.245979e-02	ci left: 2.181294e-01	ci right 2.346303e-01	k: 2263	n:10000
CSNK1A1   10000 perm   1 sec   (6699 perm/sec)   p_kst 2.263000e-01   p_cons 5.940000e-02   p_joint 6.589000e-01

Joint ci ratio: 1.970371e-02	ci left: 6.577068e-01	ci right 6.708454e-01	k: 13286	n:20000
Cons ci ratio: 1.098571e-01	ci left: 5.655298e-02	ci right 6.317570e-02	k: 1196	n:20000
KS ci ratio: 5.060922e-02	ci left: 2.248759e-01	ci right 2.366025e-01	k: 4614	n:20000
CSNK1A1   20000 perm   3 sec   (5914 perm/sec)   p_kst 2.307000e-01   p_cons 5.980000e-02   p_joint 6.643000e-01

Joint ci ratio: 1.596934e-02	ci left: 6.622367e-01	ci right 6.729308e-01	k: 20028	n:30000
Cons ci ratio: 8.833296e-02	ci left: 5.887260e-02	ci right 6.434601e-02	k: 1847	n:30000
KS ci ratio: 4.113510e-02	ci left: 2.275638e-01	ci right 2.371547e-01	k: 6970	n:30000
CSNK1A1   30000 perm   5 sec   (5603 perm/sec)   p_kst 2.323333e-01   p_cons 6.156667e-02   p_joint 6.676000e-01

Outputting figure to mutsig2_images.part000000000044/CSNK1A1.2_1142_30000_0.23233_0.061567_0.6676.png
                gene_name: CSNK1A1
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 76 percent done.
CSNK2A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.072191e-01	ci left: 1.115436e-01	ci right 1.242799e-01	k: 1178	n:10000
Cons ci ratio: 1.889386e-02	ci left: 8.036941e-01	ci right 8.191241e-01	k: 8115	n:10000
KS ci ratio: 1.085809e-01	ci left: 1.090053e-01	ci right 1.216198e-01	k: 1152	n:10000
CSNK2A2   10000 perm   1 sec   (6729 perm/sec)   p_kst 1.152000e-01   p_cons 8.115000e-01   p_joint 1.178000e-01

Joint ci ratio: 5.450130e-02	ci left: 1.998687e-01	ci right 2.111171e-01	k: 4109	n:20000
Cons ci ratio: 1.317156e-02	ci left: 8.103568e-01	ci right 8.211512e-01	k: 16316	n:20000
KS ci ratio: 7.674209e-02	ci left: 1.109540e-01	ci right 1.198582e-01	k: 2307	n:20000
CSNK2A2   20000 perm   3 sec   (5938 perm/sec)   p_kst 1.153500e-01   p_cons 8.158000e-01   p_joint 2.054500e-01

Outputting figure to mutsig2_images.part000000000044/CSNK2A2.2_1097_20000_0.11535_0.8158_0.20545.png
                gene_name: CSNK2A2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 78 percent done.
CSNK2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.655754e-02	ci left: 3.152266e-01	ci right 3.336757e-01	k: 3244	n:10000
Cons ci ratio: 1.118333e-02	ci left: 9.194566e-01	ci right 9.298944e-01	k: 9248	n:10000
KS ci ratio: 7.306490e-02	ci left: 2.152677e-01	ci right 2.316936e-01	k: 2234	n:10000
CSNK2B   10000 perm   2 sec   (6661 perm/sec)   p_kst 2.234000e-01   p_cons 9.248000e-01   p_joint 3.244000e-01

Outputting figure to mutsig2_images.part000000000044/CSNK2B.2_672_10000_0.2234_0.9248_0.3244.png
                gene_name: CSNK2B
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 79 percent done.
CSPG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.439016e-02	ci left: 2.616134e-01	ci right 2.791206e-01	k: 2703	n:10000
Cons ci ratio: 3.917845e-02	ci left: 4.903513e-01	ci right 5.100486e-01	k: 5002	n:10000
KS ci ratio: 1.495306e-01	ci left: 5.947341e-02	ci right 6.918228e-02	k: 642	n:10000
CSPG4   10000 perm   2 sec   (4472 perm/sec)   p_kst 6.420000e-02   p_cons 5.002000e-01   p_joint 2.703000e-01

Joint ci ratio: 3.293725e-02	ci left: 4.077103e-01	ci right 4.214146e-01	k: 8291	n:20000
Cons ci ratio: 2.757277e-02	ci left: 4.956456e-01	ci right 5.095536e-01	k: 10052	n:20000
KS ci ratio: 1.087026e-01	ci left: 5.772211e-02	ci right 6.440620e-02	k: 1220	n:20000
CSPG4   20000 perm   5 sec   (4085 perm/sec)   p_kst 6.100000e-02   p_cons 5.026000e-01   p_joint 4.145500e-01

Joint ci ratio: 4.845827e-02	ci left: 1.747096e-01	ci right 1.834193e-01	k: 5371	n:30000
Cons ci ratio: 2.241778e-02	ci left: 4.990588e-01	ci right 5.104070e-01	k: 15142	n:30000
KS ci ratio: 8.913233e-02	ci left: 5.786080e-02	ci right 6.329135e-02	k: 1816	n:30000
CSPG4   30000 perm   8 sec   (3952 perm/sec)   p_kst 6.053333e-02   p_cons 5.047333e-01   p_joint 1.790333e-01

Outputting figure to mutsig2_images.part000000000044/CSPG4.2_7009_30000_0.060533_0.50473_0.17903.png
                gene_name: CSPG4
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 81 percent done.
CSPG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
Cons ci ratio: 1.426573e-01	ci left: 6.517166e-02	ci right 7.528044e-02	k: 701	n:10000
KS ci ratio: 7.805671e-02	ci left: 1.934789e-01	ci right 2.092954e-01	k: 2013	n:10000
CSPG5   10000 perm   2 sec   (6186 perm/sec)   p_kst 2.013000e-01   p_cons 7.010000e-02   p_joint 1.131000e-01

Joint ci ratio: 9.120586e-02	ci left: 8.068090e-02	ci right 8.844038e-02	k: 1690	n:20000
Cons ci ratio: 1.004917e-01	ci left: 6.713637e-02	ci right 7.428904e-02	k: 1413	n:20000
KS ci ratio: 5.589096e-02	ci left: 1.918534e-01	ci right 2.029347e-01	k: 3947	n:20000
CSPG5   20000 perm   4 sec   (5466 perm/sec)   p_kst 1.973500e-01   p_cons 7.065000e-02   p_joint 8.450000e-02

Joint ci ratio: 7.278219e-02	ci left: 8.494874e-02	ci right 9.139794e-02	k: 2644	n:30000
Cons ci ratio: 8.203089e-02	ci left: 6.782449e-02	ci right 7.365897e-02	k: 2121	n:30000
KS ci ratio: 4.569266e-02	ci left: 1.924791e-01	ci right 2.015130e-01	k: 5909	n:30000
CSPG5   30000 perm   6 sec   (5199 perm/sec)   p_kst 1.969667e-01   p_cons 7.070000e-02   p_joint 8.813333e-02

Outputting figure to mutsig2_images.part000000000044/CSPG5.2_1640_30000_0.19697_0.0707_0.088133.png
                gene_name: CSPG5
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.091 

Current progress: 83 percent done.
CSRNP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.055178e-02	ci left: 7.762076e-01	ci right 7.924264e-01	k: 7844	n:10000
KS ci ratio: 8.205735e-03	ci left: 9.539874e-01	ci right 9.619430e-01	k: 9581	n:10000
CSRNP2   10000 perm   2 sec   (6374 perm/sec)   p_kst 9.581000e-01   p_cons 7.844000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSRNP2.2_1648_10000_0.9581_0.7844_1.png
                gene_name: CSRNP2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
CSRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
Cons ci ratio: 3.527114e-01	ci left: 1.005013e-02	ci right 1.444087e-02	k: 121	n:10000
KS ci ratio: 4.871812e-02	ci left: 3.833100e-01	ci right 4.025524e-01	k: 3929	n:10000
CSRP1   10000 perm   1 sec   (6902 perm/sec)   p_kst 3.929000e-01   p_cons 1.210000e-02   p_joint 2.450000e-02

Joint ci ratio: 2.378366e-01	ci left: 1.180547e-02	ci right 1.503828e-02	k: 267	n:20000
Cons ci ratio: 2.558573e-01	ci left: 1.011552e-02	ci right 1.312898e-02	k: 231	n:20000
KS ci ratio: 3.442701e-02	ci left: 3.864712e-01	ci right 4.000599e-01	k: 7865	n:20000
CSRP1   20000 perm   3 sec   (6047 perm/sec)   p_kst 3.932500e-01   p_cons 1.155000e-02   p_joint 1.335000e-02

Joint ci ratio: 1.969436e-01	ci left: 1.174887e-02	ci right 1.434670e-02	k: 390	n:30000
Cons ci ratio: 2.123298e-01	ci left: 1.004002e-02	ci right 1.245603e-02	k: 336	n:30000
KS ci ratio: 2.816648e-02	ci left: 3.867689e-01	ci right 3.978520e-01	k: 11769	n:30000
CSRP1   30000 perm   5 sec   (5727 perm/sec)   p_kst 3.923000e-01   p_cons 1.120000e-02   p_joint 1.300000e-02

Joint ci ratio: 1.699543e-01	ci left: 1.200868e-02	ci right 1.426282e-02	k: 524	n:40000
Cons ci ratio: 1.847870e-01	ci left: 1.009638e-02	ci right 1.217550e-02	k: 444	n:40000
KS ci ratio: 2.442785e-02	ci left: 3.868371e-01	ci right 3.964287e-01	k: 15665	n:40000
CSRP1   40000 perm   7 sec   (5530 perm/sec)   p_kst 3.916250e-01   p_cons 1.110000e-02   p_joint 1.310000e-02

Joint ci ratio: 1.129562e-01	ci left: 2.218992e-02	ci right 2.486580e-02	k: 1175	n:50000
Cons ci ratio: 1.644217e-01	ci left: 1.031523e-02	ci right 1.218216e-02	k: 561	n:50000
KS ci ratio: 2.179537e-02	ci left: 3.885156e-01	ci right 3.970968e-01	k: 19640	n:50000
CSRP1   50000 perm   9 sec   (5371 perm/sec)   p_kst 3.928000e-01   p_cons 1.122000e-02   p_joint 2.350000e-02

Joint ci ratio: 1.027498e-01	ci left: 2.246512e-02	ci right 2.491459e-02	k: 1420	n:60000
Cons ci ratio: 1.482614e-01	ci left: 1.066224e-02	ci right 1.238550e-02	k: 690	n:60000
KS ci ratio: 1.989024e-02	ci left: 3.890389e-01	ci right 3.968714e-01	k: 23577	n:60000
CSRP1   60000 perm   11 sec   (5228 perm/sec)   p_kst 3.929500e-01   p_cons 1.150000e-02   p_joint 2.366667e-02

Joint ci ratio: 9.544784e-02	ci left: 2.240440e-02	ci right 2.466391e-02	k: 1646	n:70000
Cons ci ratio: 1.371059e-01	ci left: 1.075092e-02	ci right 1.234710e-02	k: 807	n:70000
KS ci ratio: 1.844772e-02	ci left: 3.884807e-01	ci right 3.957283e-01	k: 27447	n:70000
CSRP1   70000 perm   14 sec   (5103 perm/sec)   p_kst 3.921000e-01   p_cons 1.152857e-02   p_joint 2.351429e-02

Joint ci ratio: 8.909655e-02	ci left: 2.257138e-02	ci right 2.468836e-02	k: 1889	n:80000
Cons ci ratio: 1.273079e-01	ci left: 1.096635e-02	ci right 1.246937e-02	k: 936	n:80000
KS ci ratio: 1.728440e-02	ci left: 3.879408e-01	ci right 3.947171e-01	k: 31306	n:80000
CSRP1   80000 perm   16 sec   (4990 perm/sec)   p_kst 3.913250e-01   p_cons 1.170000e-02   p_joint 2.361250e-02

Joint ci ratio: 8.453709e-02	ci left: 2.234603e-02	ci right 2.432930e-02	k: 2099	n:90000
Cons ci ratio: 1.209079e-01	ci left: 1.084599e-02	ci right 1.225242e-02	k: 1038	n:90000
KS ci ratio: 1.630478e-02	ci left: 3.878765e-01	ci right 3.942638e-01	k: 35196	n:90000
CSRP1   90000 perm   19 sec   (4771 perm/sec)   p_kst 3.910667e-01   p_cons 1.153333e-02   p_joint 2.332222e-02

Joint ci ratio: 8.036369e-02	ci left: 2.230523e-02	ci right 2.418256e-02	k: 2323	n:100000
Cons ci ratio: 1.153850e-01	ci left: 1.075122e-02	ci right 1.207734e-02	k: 1140	n:100000
KS ci ratio: 1.546345e-02	ci left: 3.881835e-01	ci right 3.942429e-01	k: 39121	n:100000
CSRP1   100000 perm   21 sec   (4678 perm/sec)   p_kst 3.912100e-01   p_cons 1.140000e-02   p_joint 2.323000e-02

Joint ci ratio: 7.672219e-02	ci left: 2.229167e-02	ci right 2.407904e-02	k: 2549	n:110000
Cons ci ratio: 1.099312e-01	ci left: 1.079869e-02	ci right 1.206363e-02	k: 1256	n:110000
KS ci ratio: 1.474078e-02	ci left: 3.884233e-01	ci right 3.942006e-01	k: 43044	n:110000
CSRP1   110000 perm   24 sec   (4597 perm/sec)   p_kst 3.913091e-01   p_cons 1.141818e-02   p_joint 2.317273e-02

Joint ci ratio: 7.319798e-02	ci left: 2.248658e-02	ci right 2.420323e-02	k: 2800	n:120000
Cons ci ratio: 1.047987e-01	ci left: 1.092065e-02	ci right 1.213646e-02	k: 1382	n:120000
KS ci ratio: 1.410339e-02	ci left: 3.888784e-01	ci right 3.944102e-01	k: 46997	n:120000
CSRP1   120000 perm   27 sec   (4419 perm/sec)   p_kst 3.916417e-01   p_cons 1.151667e-02   p_joint 2.333333e-02

Joint ci ratio: 7.026021e-02	ci left: 2.256236e-02	ci right 2.421284e-02	k: 3039	n:130000
Cons ci ratio: 1.008322e-01	ci left: 1.091249e-02	ci right 1.207869e-02	k: 1493	n:130000
KS ci ratio: 1.353775e-02	ci left: 3.894216e-01	ci right 3.947371e-01	k: 50970	n:130000
CSRP1   130000 perm   30 sec   (4350 perm/sec)   p_kst 3.920769e-01   p_cons 1.148462e-02   p_joint 2.337692e-02

Joint ci ratio: 6.773461e-02	ci left: 2.257230e-02	ci right 2.416181e-02	k: 3270	n:140000
Cons ci ratio: 9.746887e-02	ci left: 1.086441e-02	ci right 1.198453e-02	k: 1598	n:140000
KS ci ratio: 1.303941e-02	ci left: 3.897339e-01	ci right 3.948563e-01	k: 54921	n:140000
CSRP1   140000 perm   33 sec   (4284 perm/sec)   p_kst 3.922929e-01   p_cons 1.141429e-02   p_joint 2.335714e-02

Outputting figure to mutsig2_images.part000000000044/CSRP1.2_618_140000_0.39229_0.011414_0.023357.png
                gene_name: CSRP1
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.024 

Current progress: 86 percent done.
CSTF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.999184e-02	ci left: 7.855326e-01	ci right 8.014960e-01	k: 7936	n:10000
KS ci ratio: 2.193174e-02	ci left: 7.531230e-01	ci right 7.699244e-01	k: 7616	n:10000
CSTF1   10000 perm   2 sec   (6304 perm/sec)   p_kst 7.616000e-01   p_cons 7.936000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CSTF1.2_1316_10000_0.7616_0.7936_1.png
                gene_name: CSTF1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
CSTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.104908e-02	ci left: 7.679013e-01	ci right 7.843376e-01	k: 7762	n:10000
Cons ci ratio: 1.969865e-02	ci left: 7.904003e-01	ci right 8.062255e-01	k: 7984	n:10000
KS ci ratio: 1.807872e-01	ci left: 4.082863e-02	ci right 4.903911e-02	k: 448	n:10000
CSTL1   10000 perm   1 sec   (7033 perm/sec)   p_kst 4.480000e-02   p_cons 7.984000e-01   p_joint 7.762000e-01

Joint ci ratio: 5.568329e-03	ci left: 9.584823e-01	ci right 9.638825e-01	k: 19225	n:20000
Cons ci ratio: 1.399798e-02	ci left: 7.911554e-01	ci right 8.023582e-01	k: 15936	n:20000
KS ci ratio: 1.273938e-01	ci left: 4.231371e-02	ci right 4.811944e-02	k: 903	n:20000
CSTL1   20000 perm   3 sec   (6161 perm/sec)   p_kst 4.515000e-02   p_cons 7.968000e-01   p_joint 9.612500e-01

Joint ci ratio: 4.540615e-03	ci left: 9.590898e-01	ci right 9.634869e-01	k: 28840	n:30000
Cons ci ratio: 1.147745e-02	ci left: 7.908235e-01	ci right 7.999859e-01	k: 23863	n:30000
KS ci ratio: 1.025604e-01	ci left: 4.404707e-02	ci right 4.884126e-02	k: 1392	n:30000
CSTL1   30000 perm   5 sec   (5846 perm/sec)   p_kst 4.640000e-02   p_cons 7.954333e-01   p_joint 9.613333e-01

Joint ci ratio: 3.915163e-03	ci left: 9.597217e-01	ci right 9.635109e-01	k: 38466	n:40000
Cons ci ratio: 9.898751e-03	ci left: 7.927976e-01	ci right 8.007093e-01	k: 31871	n:40000
KS ci ratio: 8.833088e-02	ci left: 4.484853e-02	ci right 4.901756e-02	k: 1876	n:40000
CSTL1   40000 perm   7 sec   (5645 perm/sec)   p_kst 4.690000e-02   p_cons 7.967750e-01   p_joint 9.616500e-01

Outputting figure to mutsig2_images.part000000000044/CSTL1.2_450_40000_0.0469_0.79678_0.96165.png
                gene_name: CSTL1
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 90 percent done.
CT45A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.947173e-02	ci left: 3.760446e-01	ci right 3.952221e-01	k: 3856	n:10000
Cons ci ratio: 2.874356e-02	ci left: 6.408607e-01	ci right 6.596517e-01	k: 6503	n:10000
KS ci ratio: 8.704611e-02	ci left: 1.612110e-01	ci right 1.759826e-01	k: 1685	n:10000
CT45A5   10000 perm   1 sec   (6891 perm/sec)   p_kst 1.685000e-01   p_cons 6.503000e-01   p_joint 3.856000e-01

Outputting figure to mutsig2_images.part000000000044/CT45A5.2_586_10000_0.1685_0.6503_0.3856.png
                gene_name: CT45A5
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 91 percent done.
CTBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.844577e-03	ci left: 9.669936e-01	ci right 9.737287e-01	k: 9705	n:10000
Cons ci ratio: 8.286976e-03	ci left: 9.531520e-01	ci right 9.611789e-01	k: 9573	n:10000
KS ci ratio: 2.222147e-02	ci left: 7.482674e-01	ci right 7.651828e-01	k: 7568	n:10000
CTBP2   10000 perm   2 sec   (5603 perm/sec)   p_kst 7.568000e-01   p_cons 9.573000e-01   p_joint 9.705000e-01

Outputting figure to mutsig2_images.part000000000044/CTBP2.2_3056_10000_0.7568_0.9573_0.9705.png
                gene_name: CTBP2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 93 percent done.
CTDSP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.970690e-02	ci left: 4.836541e-01	ci right 5.033497e-01	k: 4935	n:10000
Cons ci ratio: 6.210389e-02	ci left: 2.759680e-01	ci right 2.937575e-01	k: 2848	n:10000
KS ci ratio: 1.334449e-02	ci left: 8.900563e-01	ci right 9.021119e-01	k: 8962	n:10000
CTDSP1   10000 perm   2 sec   (6184 perm/sec)   p_kst 8.962000e-01   p_cons 2.848000e-01   p_joint 4.935000e-01

Outputting figure to mutsig2_images.part000000000044/CTDSP1.2_814_10000_0.8962_0.2848_0.4935.png
                gene_name: CTDSP1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 95 percent done.
CTH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.256428e-01	ci left: 8.310086e-02	ci right 9.434008e-02	k: 886	n:10000
KS ci ratio: 3.235097e-02	ci left: 5.851015e-01	ci right 6.044433e-01	k: 5948	n:10000
CTH   10000 perm   1 sec   (6745 perm/sec)   p_kst 5.948000e-01   p_cons 8.860000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.789646e-02	ci left: 8.646061e-02	ci right 9.445892e-02	k: 1808	n:20000
KS ci ratio: 2.300282e-02	ci left: 5.853012e-01	ci right 5.989720e-01	k: 11843	n:20000
CTH   20000 perm   3 sec   (5952 perm/sec)   p_kst 5.921500e-01   p_cons 9.040000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000044/CTH.2_1266_20000_0.59215_0.0904_1.png
                gene_name: CTH
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
CTLA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.033410e-02	ci left: 2.285942e-01	ci right 2.453593e-01	k: 2369	n:10000
Cons ci ratio: 1.003866e-01	ci left: 1.256193e-01	ci right 1.389957e-01	k: 1322	n:10000
KS ci ratio: 1.878267e-02	ci left: 8.055218e-01	ci right 8.208953e-01	k: 8133	n:10000
CTLA4   10000 perm   1 sec   (6983 perm/sec)   p_kst 8.133000e-01   p_cons 1.322000e-01   p_joint 2.369000e-01

Joint ci ratio: 1.858950e-02	ci left: 6.832866e-01	ci right 6.961582e-01	k: 13795	n:20000
Cons ci ratio: 7.080039e-02	ci left: 1.281747e-01	ci right 1.376323e-01	k: 2657	n:20000
KS ci ratio: 1.348391e-02	ci left: 8.031286e-01	ci right 8.140815e-01	k: 16173	n:20000
CTLA4   20000 perm   3 sec   (6125 perm/sec)   p_kst 8.086500e-01   p_cons 1.328500e-01   p_joint 6.897500e-01

Outputting figure to mutsig2_images.part000000000044/CTLA4.2_688_20000_0.80865_0.13285_0.68975.png
                gene_name: CTLA4
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 98 percent done.
CTNS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.416871e-02	ci left: 3.342886e-01	ci right 3.530026e-01	k: 3436	n:10000
Cons ci ratio: 2.629793e-02	ci left: 6.804278e-01	ci right 6.986616e-01	k: 6896	n:10000
KS ci ratio: 1.073223e-01	ci left: 1.113483e-01	ci right 1.240753e-01	k: 1176	n:10000
CTNS   10000 perm   2 sec   (6412 perm/sec)   p_kst 1.176000e-01   p_cons 6.896000e-01   p_joint 3.436000e-01

Joint ci ratio: 2.889134e-03	ci left: 9.877757e-01	ci right 9.906794e-01	k: 19786	n:20000
Cons ci ratio: 1.800529e-02	ci left: 6.968646e-01	ci right 7.095762e-01	k: 14065	n:20000
KS ci ratio: 7.693061e-02	ci left: 1.104624e-01	ci right 1.193499e-01	k: 2297	n:20000
CTNS   20000 perm   4 sec   (5642 perm/sec)   p_kst 1.148500e-01   p_cons 7.032500e-01   p_joint 9.893000e-01

Outputting figure to mutsig2_images.part000000000044/CTNS.2_1266_20000_0.11485_0.70325_0.9893.png
                gene_name: CTNS
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000044
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 44 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9893900: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000045> was used as the working directory.
Started at Sat Oct  6 00:04:36 2012
Results reported at Sat Oct  6 00:12:29 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000045.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000045.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 45  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000045.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    445.27 sec.
    Max Memory :      3609 MB
    Max Swap   :      5938 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
45
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 45
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 45: processing genes 3968 - 4057
Calculating significance of each gene.
Using projection method.
3968	CTPS	6.227179e-01
3969	CTPS2	4.517327e-01
3970	CTR9	6.947967e-01
3971	CTRB1	1
3972	CTRB2	1
3973	CTRC	5.722536e-01
3974	CTRL	2.059769e-01
3975	CTSA	2.960547e-01
3976	CTSB	8.010484e-02
3977	CTSC	4.812744e-02
3978	CTSD	2.520854e-01
3979	CTSE	8.521419e-01
3980	CTSF	7.417319e-02
3981	CTSG	1.369493e-01
3982	CTSH	3.917057e-01
3983	CTSK	1
3984	CTSL1	1.502716e-01
3985	CTSL2	1.965012e-01
3986	CTSO	2.381608e-04
3987	CTSS	3.432174e-01
3988	CTSW	7.554747e-01
3989	CTSZ	6.971929e-01
3990	CTTN	9.795354e-01
3991	CTTNBP2	8.655157e-01
3992	CTTNBP2NL	6.913254e-01
3993	CTU2	1
3994	CTXN1	1
3995	CTXN3	6.961417e-02
3996	CUBN	6.099391e-03
3997	CUEDC1	1
3998	CUEDC2	6.195668e-01
3999	CUL1	2.913401e-02
4000/18030 4000	CUL2	2.853130e-01
4001	CUL3	8.839686e-01
4002	CUL4A	8.632291e-01
4003	CUL4B	2.595184e-01
4004	CUL5	1.810987e-01
4005	CUL7	7.143426e-01
4006	CUL9	8.491973e-01
4007	CUTA	1
4008	CUTC	6.410645e-01
4009	CUX1	8.723692e-01
4010	CUX2	8.783939e-01
In gene CUZD1 the following bins exceed PROBCAP:
    READ-AG-3727	categ 6	N = 1860    n = 1	mu =   2.96e-07
4011	CUZD1	2.157944e-01
4012	CWC15	4.393305e-01
4013	CWC22	6.223359e-01
4014	CWC25	1
4015	CWC27	1.809513e-02
4016	CWF19L1	7.014445e-01
4017	CWF19L2	2.133288e-02
4018	CWH43	6.455167e-01
4019	CX3CL1	9.388117e-01
4020	CX3CR1	6.585588e-01
4021	CXADR	1.624301e-01
4022	CXCL1	1
4023	CXCL10	3.497310e-01
4024	CXCL11	1.058673e-02
4025	CXCL12	4.199676e-01
4026	CXCL13	1
4027	CXCL14	1.287898e-01
4028	CXCL16	8.460956e-01
4029	CXCL17	4.594254e-02
4030	CXCL2	1
4031	CXCL3	1
4032	CXCL5	1.022204e-01
4033	CXCL6	5.029930e-01
4034	CXCL9	2.977293e-02
4035	CXCR1	7.000384e-01
4036	CXCR2	4.719046e-01
4037	CXCR3	1
4038	CXCR4	2.056527e-02
4039	CXCR5	3.098320e-01
4040	CXCR6	1
4041	CXCR7	5.047298e-03
4042	CXXC1	8.767059e-01
4043	CXXC4	3.912161e-01
4044	CXXC5	6.162218e-01
4045	CXorf1	7.973482e-02
4046	CXorf21	2.285927e-01
4047	CXorf22	1.820988e-02
4048	CXorf23	7.955292e-01
4049	CXorf26	1
4050	CXorf27	1
4051	CXorf36	3.683355e-01
4052	CXorf38	1
4053	CXorf40A	1
4054	CXorf40B	1
4055	CXorf41	1
4056	CXorf48	1
4057	CXorf56	1
Done

Running MutSig 2:
Scatter job 45: processing genes 3968 - 4057
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CUBN
Processing conservation and coverage...
89% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.380079e-02	ci left: 5.637364e-01	ci right 5.832208e-01	k: 5735	n:10000
Cons ci ratio: 1.518969e-03	ci left: 9.976522e-01	ci right 9.992344e-01	k: 9986	n:10000
KS ci ratio: 5.098745e-02	ci left: 3.619185e-01	ci right 3.809565e-01	k: 3714	n:10000
CUBN   10000 perm   3 sec   (3395 perm/sec)   p_kst 3.714000e-01   p_cons 9.986000e-01   p_joint 5.735000e-01

Outputting figure to mutsig2_images.part000000000045/CUBN.28_11140_10000_0.3714_0.9986_0.5735.png
                gene_name: CUBN
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 2 percent done.
CWF19L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.046152e-01	ci left: 3.176903e-02	ci right 3.910482e-02	k: 353	n:10000
Cons ci ratio: 3.264030e-02	ci left: 5.807868e-01	ci right 6.001604e-01	k: 5905	n:10000
KS ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
CWF19L2   10000 perm   2 sec   (5335 perm/sec)   p_kst 1.190000e-02   p_cons 5.905000e-01   p_joint 3.530000e-02

Joint ci ratio: 1.710052e-01	ci left: 2.340739e-02	ci right 2.783199e-02	k: 511	n:20000
Cons ci ratio: 2.411047e-02	ci left: 5.623526e-01	ci right 5.761273e-01	k: 11385	n:20000
KS ci ratio: 2.604388e-01	ci left: 9.741161e-03	ci right 1.270351e-02	k: 223	n:20000
CWF19L2   20000 perm   4 sec   (4639 perm/sec)   p_kst 1.115000e-02   p_cons 5.692500e-01   p_joint 2.555000e-02

Joint ci ratio: 1.286897e-01	ci left: 2.806632e-02	ci right 3.195873e-02	k: 899	n:30000
Cons ci ratio: 1.899605e-02	ci left: 5.810695e-01	ci right 5.922470e-01	k: 17600	n:30000
KS ci ratio: 2.120119e-01	ci left: 1.007160e-02	ci right 1.249111e-02	k: 337	n:30000
CWF19L2   30000 perm   7 sec   (4524 perm/sec)   p_kst 1.123333e-02   p_cons 5.866667e-01   p_joint 2.996667e-02

Joint ci ratio: 1.031064e-01	ci left: 3.307405e-02	ci right 3.669388e-02	k: 1394	n:40000
Cons ci ratio: 1.642890e-02	ci left: 5.824817e-01	ci right 5.921556e-01	k: 23493	n:40000
KS ci ratio: 1.869226e-01	ci left: 9.857902e-03	ci right 1.191403e-02	k: 434	n:40000
CWF19L2   40000 perm   9 sec   (4419 perm/sec)   p_kst 1.085000e-02   p_cons 5.873250e-01   p_joint 3.485000e-02

Joint ci ratio: 1.370438e-01	ci left: 1.499564e-02	ci right 1.722105e-02	k: 804	n:50000
Cons ci ratio: 1.469772e-02	ci left: 5.828896e-01	ci right 5.915403e-01	k: 29361	n:50000
KS ci ratio: 1.660733e-01	ci left: 1.010424e-02	ci right 1.195319e-02	k: 550	n:50000
CWF19L2   50000 perm   11 sec   (4373 perm/sec)   p_kst 1.100000e-02   p_cons 5.872200e-01   p_joint 1.608000e-02

Joint ci ratio: 1.098471e-01	ci left: 1.964052e-02	ci right 2.193949e-02	k: 1246	n:60000
Cons ci ratio: 1.340804e-02	ci left: 5.835986e-01	ci right 5.914930e-01	k: 35253	n:60000
KS ci ratio: 1.544881e-01	ci left: 9.795976e-03	ci right 1.145187e-02	k: 636	n:60000
CWF19L2   60000 perm   14 sec   (4296 perm/sec)   p_kst 1.060000e-02   p_cons 5.875500e-01   p_joint 2.076667e-02

Joint ci ratio: 1.068716e-01	ci left: 1.784844e-02	ci right 1.987744e-02	k: 1319	n:70000
Cons ci ratio: 1.239537e-02	ci left: 5.846006e-01	ci right 5.919064e-01	k: 41178	n:70000
KS ci ratio: 1.432396e-01	ci left: 9.826995e-03	ci right 1.135684e-02	k: 740	n:70000
CWF19L2   70000 perm   17 sec   (4227 perm/sec)   p_kst 1.057143e-02   p_cons 5.882571e-01   p_joint 1.884286e-02

Joint ci ratio: 9.346966e-02	ci left: 2.050605e-02	ci right 2.252886e-02	k: 1720	n:80000
Cons ci ratio: 1.160398e-02	ci left: 5.844548e-01	ci right 5.912888e-01	k: 47030	n:80000
KS ci ratio: 1.338972e-01	ci left: 9.889809e-03	ci right 1.132101e-02	k: 847	n:80000
CWF19L2   80000 perm   19 sec   (4163 perm/sec)   p_kst 1.058750e-02   p_cons 5.878750e-01   p_joint 2.150000e-02

Joint ci ratio: 9.361155e-02	ci left: 1.821573e-02	ci right 2.001546e-02	k: 1719	n:90000
Cons ci ratio: 1.095083e-02	ci left: 5.841865e-01	ci right 5.906301e-01	k: 52867	n:90000
KS ci ratio: 1.275983e-01	ci left: 9.715195e-03	ci right 1.104998e-02	k: 933	n:90000
CWF19L2   90000 perm   22 sec   (4100 perm/sec)   p_kst 1.036667e-02   p_cons 5.874111e-01   p_joint 1.910000e-02

Joint ci ratio: 7.899968e-02	ci left: 2.307985e-02	ci right 2.498790e-02	k: 2402	n:100000
Cons ci ratio: 1.039448e-02	ci left: 5.840910e-01	ci right 5.902040e-01	k: 58715	n:100000
KS ci ratio: 1.206854e-01	ci left: 9.809560e-03	ci right 1.107908e-02	k: 1043	n:100000
CWF19L2   100000 perm   25 sec   (4037 perm/sec)   p_kst 1.043000e-02   p_cons 5.871500e-01   p_joint 2.402000e-02

Joint ci ratio: 9.499082e-02	ci left: 1.452075e-02	ci right 1.597770e-02	k: 1676	n:110000
Cons ci ratio: 9.902675e-03	ci left: 5.846295e-01	ci right 5.904568e-01	k: 64630	n:110000
KS ci ratio: 1.160119e-01	ci left: 9.676420e-03	ci right 1.087688e-02	k: 1129	n:110000
CWF19L2   110000 perm   28 sec   (3980 perm/sec)   p_kst 1.026364e-02   p_cons 5.875455e-01   p_joint 1.523636e-02

Joint ci ratio: 8.650308e-02	ci left: 1.609667e-02	ci right 1.756014e-02	k: 2018	n:120000
Cons ci ratio: 9.488836e-03	ci left: 5.843581e-01	ci right 5.899377e-01	k: 70458	n:120000
KS ci ratio: 1.113805e-01	ci left: 9.647296e-03	ci right 1.079323e-02	k: 1225	n:120000
CWF19L2   120000 perm   31 sec   (3899 perm/sec)   p_kst 1.020833e-02   p_cons 5.871500e-01   p_joint 1.681667e-02

Joint ci ratio: 8.433855e-02	ci left: 1.565628e-02	ci right 1.704233e-02	k: 2124	n:130000
Cons ci ratio: 9.116224e-03	ci left: 5.844871e-01	ci right 5.898475e-01	k: 76332	n:130000
KS ci ratio: 1.066935e-01	ci left: 9.728300e-03	ci right 1.083217e-02	k: 1335	n:130000
CWF19L2   130000 perm   34 sec   (3851 perm/sec)   p_kst 1.026923e-02   p_cons 5.871692e-01   p_joint 1.633846e-02

Joint ci ratio: 8.314582e-02	ci left: 1.497833e-02	ci right 1.628470e-02	k: 2187	n:140000
Cons ci ratio: 8.786520e-03	ci left: 5.844798e-01	ci right 5.896451e-01	k: 82189	n:140000
KS ci ratio: 1.028403e-01	ci left: 9.742908e-03	ci right 1.080609e-02	k: 1437	n:140000
CWF19L2   140000 perm   37 sec   (3804 perm/sec)   p_kst 1.026429e-02   p_cons 5.870643e-01   p_joint 1.562143e-02

Joint ci ratio: 8.107252e-02	ci left: 1.472409e-02	ci right 1.597474e-02	k: 2301	n:150000
Cons ci ratio: 8.494151e-03	ci left: 5.842497e-01	ci right 5.892402e-01	k: 88012	n:150000
KS ci ratio: 9.963824e-02	ci left: 9.704171e-03	ci right 1.072823e-02	k: 1531	n:150000
CWF19L2   150000 perm   40 sec   (3756 perm/sec)   p_kst 1.020667e-02   p_cons 5.867467e-01   p_joint 1.534000e-02

Outputting figure to mutsig2_images.part000000000045/CWF19L2.13_2757_150000_0.010207_0.58675_0.01534.png
                gene_name: CWF19L2
               theta_stop: 0.100 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0097 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 4 percent done.
CUL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.490358e-01	ci left: 5.985938e-02	ci right 6.959607e-02	k: 646	n:10000
Cons ci ratio: 9.399846e-03	ci left: 9.410771e-01	ci right 9.500611e-01	k: 9457	n:10000
KS ci ratio: 2.348632e-01	ci left: 2.391158e-02	ci right 3.036784e-02	k: 270	n:10000
CUL9   10000 perm   2 sec   (4006 perm/sec)   p_kst 2.700000e-02   p_cons 9.457000e-01   p_joint 6.460000e-02

Joint ci ratio: 1.123232e-01	ci left: 5.416716e-02	ci right 6.066226e-02	k: 1147	n:20000
Cons ci ratio: 6.870783e-03	ci left: 9.388247e-01	ci right 9.453461e-01	k: 18843	n:20000
KS ci ratio: 1.646773e-01	ci left: 2.527745e-02	ci right 2.986128e-02	k: 550	n:20000
CUL9   20000 perm   5 sec   (3678 perm/sec)   p_kst 2.750000e-02   p_cons 9.421500e-01   p_joint 5.735000e-02

Joint ci ratio: 8.219775e-02	ci left: 6.756291e-02	ci right 7.338727e-02	k: 2113	n:30000
Cons ci ratio: 5.575846e-03	ci left: 9.401123e-01	ci right 9.454015e-01	k: 28284	n:30000
KS ci ratio: 1.357744e-01	ci left: 2.519514e-02	ci right 2.889722e-02	k: 810	n:30000
CUL9   30000 perm   8 sec   (3567 perm/sec)   p_kst 2.700000e-02   p_cons 9.428000e-01   p_joint 7.043333e-02

Joint ci ratio: 7.024720e-02	ci left: 6.968224e-02	ci right 7.478007e-02	k: 2888	n:40000
Cons ci ratio: 4.844197e-03	ci left: 9.401229e-01	ci right 9.447126e-01	k: 37698	n:40000
KS ci ratio: 1.162291e-01	ci left: 2.604071e-02	ci right 2.927835e-02	k: 1105	n:40000
CUL9   40000 perm   11 sec   (3495 perm/sec)   p_kst 2.762500e-02   p_cons 9.424500e-01   p_joint 7.220000e-02

Joint ci ratio: 6.442443e-02	ci left: 6.671468e-02	ci right 7.117552e-02	k: 3446	n:50000
Cons ci ratio: 4.329043e-03	ci left: 9.404643e-01	ci right 9.445641e-01	k: 47127	n:50000
KS ci ratio: 1.035549e-01	ci left: 2.641546e-02	ci right 2.931970e-02	k: 1392	n:50000
CUL9   50000 perm   15 sec   (3433 perm/sec)   p_kst 2.784000e-02   p_cons 9.425400e-01   p_joint 6.892000e-02

Joint ci ratio: 6.128584e-02	ci left: 6.187368e-02	ci right 6.580197e-02	k: 3829	n:60000
Cons ci ratio: 3.955659e-03	ci left: 9.405398e-01	ci right 9.442840e-01	k: 56546	n:60000
KS ci ratio: 9.408756e-02	ci left: 2.679221e-02	ci right 2.945370e-02	k: 1686	n:60000
CUL9   60000 perm   18 sec   (3378 perm/sec)   p_kst 2.810000e-02   p_cons 9.424333e-01   p_joint 6.381667e-02

Outputting figure to mutsig2_images.part000000000045/CUL9.12_7714_60000_0.0281_0.94243_0.063817.png
                gene_name: CUL9
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.066 

Current progress: 6 percent done.
CXorf22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.673316e-02	ci left: 8.386731e-01	ci right 8.529249e-01	k: 8459	n:10000
Cons ci ratio: 1.985145e-02	ci left: 7.878649e-01	ci right 8.037624e-01	k: 7959	n:10000
KS ci ratio: 4.285168e-02	ci left: 4.457032e-01	ci right 4.653227e-01	k: 4555	n:10000
CXorf22   10000 perm   2 sec   (5549 perm/sec)   p_kst 4.555000e-01   p_cons 7.959000e-01   p_joint 8.459000e-01

Outputting figure to mutsig2_images.part000000000045/CXorf22.11_2995_10000_0.4555_0.7959_0.8459.png
                gene_name: CXorf22
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 8 percent done.
CTTNBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.600744e-02	ci left: 3.194942e-01	ci right 3.380056e-01	k: 3287	n:10000
Cons ci ratio: 1.133002e-01	ci left: 1.008116e-01	ci right 1.130184e-01	k: 1068	n:10000
KS ci ratio: 2.726052e-02	ci left: 6.647131e-01	ci right 6.831855e-01	k: 6740	n:10000
CTTNBP2   10000 perm   2 sec   (4961 perm/sec)   p_kst 6.740000e-01   p_cons 1.068000e-01   p_joint 3.287000e-01

Joint ci ratio: 3.916768e-02	ci left: 3.271148e-01	ci right 3.402336e-01	k: 6673	n:20000
Cons ci ratio: 8.007495e-02	ci left: 1.026992e-01	ci right 1.113154e-01	k: 2139	n:20000
KS ci ratio: 2.012493e-02	ci left: 6.481638e-01	ci right 6.613912e-01	k: 13096	n:20000
CTTNBP2   20000 perm   4 sec   (4548 perm/sec)   p_kst 6.548000e-01   p_cons 1.069500e-01   p_joint 3.336500e-01

Outputting figure to mutsig2_images.part000000000045/CTTNBP2.10_5084_20000_0.6548_0.10695_0.33365.png
                gene_name: CTTNBP2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 10 percent done.
CXCR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.072499e-02	ci left: 6.098000e-01	ci right 6.289304e-01	k: 6194	n:10000
Cons ci ratio: 1.652095e-02	ci left: 8.420346e-01	ci right 8.561614e-01	k: 8492	n:10000
KS ci ratio: 4.489509e-02	ci left: 4.227607e-01	ci right 4.422786e-01	k: 4325	n:10000
CXCR7   10000 perm   2 sec   (6597 perm/sec)   p_kst 4.325000e-01   p_cons 8.492000e-01   p_joint 6.194000e-01

Outputting figure to mutsig2_images.part000000000045/CXCR7.9_1093_10000_0.4325_0.8492_0.6194.png
                gene_name: CXCR7
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 12 percent done.
CUL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.073996e-02	ci left: 7.730669e-01	ci right 7.893690e-01	k: 7813	n:10000
Cons ci ratio: 4.108949e-02	ci left: 4.665692e-01	ci right 4.862446e-01	k: 4764	n:10000
KS ci ratio: 3.982620e-02	ci left: 4.821550e-01	ci right 5.018497e-01	k: 4920	n:10000
CUL1   10000 perm   2 sec   (5131 perm/sec)   p_kst 4.920000e-01   p_cons 4.764000e-01   p_joint 7.813000e-01

Outputting figure to mutsig2_images.part000000000045/CUL1.8_2415_10000_0.492_0.4764_0.7813.png
                gene_name: CUL1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 14 percent done.
CTSO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.453122e-02	ci left: 4.267492e-01	ci right 4.462878e-01	k: 4365	n:10000
Cons ci ratio: 7.027581e-02	ci left: 2.288905e-01	ci right 2.456629e-01	k: 2372	n:10000
KS ci ratio: 4.723945e-02	ci left: 3.980467e-01	ci right 4.174071e-01	k: 4077	n:10000
CTSO   10000 perm   2 sec   (6069 perm/sec)   p_kst 4.077000e-01   p_cons 2.372000e-01   p_joint 4.365000e-01

Outputting figure to mutsig2_images.part000000000045/CTSO.7_998_10000_0.4077_0.2372_0.4365.png
                gene_name: CTSO
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 16 percent done.
CUX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.645628e-02	ci left: 4.061158e-01	ci right 4.255332e-01	k: 4158	n:10000
Cons ci ratio: 7.776672e-02	ci left: 1.946611e-01	ci right 2.105125e-01	k: 2025	n:10000
KS ci ratio: 3.389067e-02	ci left: 5.624330e-01	ci right 5.819249e-01	k: 5722	n:10000
CUX2   10000 perm   2 sec   (4484 perm/sec)   p_kst 5.722000e-01   p_cons 2.025000e-01   p_joint 4.158000e-01

Outputting figure to mutsig2_images.part000000000045/CUX2.7_4549_10000_0.5722_0.2025_0.4158.png
                gene_name: CUX2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 18 percent done.
CTR9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.981480e-02	ci left: 7.884733e-01	ci right 8.043536e-01	k: 7965	n:10000
Cons ci ratio: 4.039597e-02	ci left: 4.750602e-01	ci right 4.947485e-01	k: 4849	n:10000
KS ci ratio: 3.012213e-02	ci left: 6.191440e-01	ci right 6.381810e-01	k: 6287	n:10000
CTR9   10000 perm   2 sec   (5781 perm/sec)   p_kst 6.287000e-01   p_cons 4.849000e-01   p_joint 7.965000e-01

Outputting figure to mutsig2_images.part000000000045/CTR9.6_3622_10000_0.6287_0.4849_0.7965.png
                gene_name: CTR9
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 20 percent done.
CTSC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.302283e-02	ci left: 2.154651e-01	ci right 2.318962e-01	k: 2236	n:10000
Cons ci ratio: 2.401460e-02	ci left: 7.182540e-01	ci right 7.358135e-01	k: 7271	n:10000
KS ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
CTSC   10000 perm   2 sec   (5584 perm/sec)   p_kst 5.140000e-02   p_cons 7.271000e-01   p_joint 2.236000e-01

Joint ci ratio: 7.017748e-02	ci left: 1.301938e-01	ci right 1.397126e-01	k: 2698	n:20000
Cons ci ratio: 1.661784e-02	ci left: 7.294290e-01	ci right 7.417024e-01	k: 14712	n:20000
KS ci ratio: 1.182888e-01	ci left: 4.896323e-02	ci right 5.516782e-02	k: 1040	n:20000
CTSC   20000 perm   4 sec   (5099 perm/sec)   p_kst 5.200000e-02   p_cons 7.356000e-01   p_joint 1.349000e-01

Joint ci ratio: 4.866253e-02	ci left: 1.734881e-01	ci right 1.821744e-01	k: 5334	n:30000
Cons ci ratio: 1.332908e-02	ci left: 7.374785e-01	ci right 7.474078e-01	k: 22274	n:30000
KS ci ratio: 9.776107e-02	ci left: 4.837465e-02	ci right 5.337945e-02	k: 1525	n:30000
CTSC   30000 perm   6 sec   (4904 perm/sec)   p_kst 5.083333e-02   p_cons 7.424667e-01   p_joint 1.778000e-01

Outputting figure to mutsig2_images.part000000000045/CTSC.6_1551_30000_0.050833_0.74247_0.1778.png
                gene_name: CTSC
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 22 percent done.
CUL4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.320754e-02	ci left: 4.416119e-01	ci right 4.612164e-01	k: 4514	n:10000
Cons ci ratio: 4.804081e-02	ci left: 3.899802e-01	ci right 4.092783e-01	k: 3996	n:10000
KS ci ratio: 4.293816e-02	ci left: 4.447053e-01	ci right 4.643212e-01	k: 4545	n:10000
CUL4B   10000 perm   3 sec   (3531 perm/sec)   p_kst 4.545000e-01   p_cons 3.996000e-01   p_joint 4.514000e-01

Outputting figure to mutsig2_images.part000000000045/CUL4B.6_2839_10000_0.4545_0.3996_0.4514.png
                gene_name: CUL4B
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 24 percent done.
CUL7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.208622e-01	ci left: 6.794980e-03	ci right 1.049980e-02	k: 85	n:10000
Cons ci ratio: 8.321448e-02	ci left: 1.739892e-01	ci right 1.891967e-01	k: 1815	n:10000
KS ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
CUL7   10000 perm   2 sec   (4969 perm/sec)   p_kst 9.900000e-03   p_cons 1.815000e-01   p_joint 8.500000e-03

Joint ci ratio: 1.796557e-01	ci left: 2.115822e-02	ci right 2.538195e-02	k: 464	n:20000
Cons ci ratio: 5.938241e-02	ci left: 1.735608e-01	ci right 1.842327e-01	k: 3577	n:20000
KS ci ratio: 2.908546e-01	ci left: 7.691529e-03	ci right 1.035416e-02	k: 179	n:20000
CUL7   20000 perm   4 sec   (4536 perm/sec)   p_kst 8.950000e-03   p_cons 1.788500e-01   p_joint 2.320000e-02

Joint ci ratio: 1.371714e-01	ci left: 2.467957e-02	ci right 2.834624e-02	k: 794	n:30000
Cons ci ratio: 4.931591e-02	ci left: 1.696591e-01	ci right 1.782708e-01	k: 5218	n:30000
KS ci ratio: 2.327460e-01	ci left: 8.276287e-03	ci right 1.048696e-02	k: 280	n:30000
CUL7   30000 perm   7 sec   (4348 perm/sec)   p_kst 9.333333e-03   p_cons 1.739333e-01   p_joint 2.646667e-02

Joint ci ratio: 1.411185e-01	ci left: 1.758805e-02	ci right 2.028243e-02	k: 756	n:40000
Cons ci ratio: 4.278214e-02	ci left: 1.697507e-01	ci right 1.771967e-01	k: 6938	n:40000
KS ci ratio: 2.033995e-01	ci left: 8.263895e-03	ci right 1.015838e-02	k: 367	n:40000
CUL7   40000 perm   9 sec   (4237 perm/sec)   p_kst 9.175000e-03   p_cons 1.734500e-01   p_joint 1.890000e-02

Joint ci ratio: 1.195794e-01	ci left: 1.978049e-02	ci right 2.231555e-02	k: 1051	n:50000
Cons ci ratio: 3.839618e-02	ci left: 1.691776e-01	ci right 1.758205e-01	k: 8624	n:50000
KS ci ratio: 1.831358e-01	ci left: 8.248079e-03	ci right 9.929659e-03	k: 453	n:50000
CUL7   50000 perm   12 sec   (4134 perm/sec)   p_kst 9.060000e-03   p_cons 1.724800e-01   p_joint 2.102000e-02

Joint ci ratio: 1.123573e-01	ci left: 1.876505e-02	ci right 2.101506e-02	k: 1192	n:60000
Cons ci ratio: 3.367124e-02	ci left: 1.811549e-01	ci right 1.873757e-01	k: 11055	n:60000
KS ci ratio: 1.680849e-01	ci left: 8.227880e-03	ci right 9.753516e-03	k: 538	n:60000
CUL7   60000 perm   15 sec   (4059 perm/sec)   p_kst 8.966667e-03   p_cons 1.842500e-01   p_joint 1.986667e-02

Joint ci ratio: 1.264498e-01	ci left: 1.268585e-02	ci right 1.441197e-02	k: 947	n:70000
Cons ci ratio: 3.118341e-02	ci left: 1.812917e-01	ci right 1.870488e-01	k: 12891	n:70000
KS ci ratio: 1.563499e-01	ci left: 8.203793e-03	ci right 9.608798e-03	k: 622	n:70000
CUL7   70000 perm   18 sec   (3999 perm/sec)   p_kst 8.885714e-03   p_cons 1.841571e-01   p_joint 1.352857e-02

Joint ci ratio: 1.105897e-01	ci left: 1.460671e-02	ci right 1.632869e-02	k: 1236	n:80000
Cons ci ratio: 3.054770e-02	ci left: 1.680861e-01	ci right 1.733128e-01	k: 13655	n:80000
KS ci ratio: 1.481534e-01	ci left: 8.031969e-03	ci right 9.329039e-03	k: 693	n:80000
CUL7   80000 perm   20 sec   (3938 perm/sec)   p_kst 8.662500e-03   p_cons 1.706875e-01   p_joint 1.545000e-02

Joint ci ratio: 1.240247e-01	ci left: 1.029650e-02	ci right 1.166863e-02	k: 987	n:90000
Cons ci ratio: 2.817368e-02	ci left: 1.745224e-01	ci right 1.795206e-01	k: 15931	n:90000
KS ci ratio: 1.387646e-01	ci left: 8.178693e-03	ci right 9.408837e-03	k: 790	n:90000
CUL7   90000 perm   23 sec   (3878 perm/sec)   p_kst 8.777778e-03   p_cons 1.770111e-01   p_joint 1.096667e-02

Joint ci ratio: 1.188581e-01	ci left: 1.012007e-02	ci right 1.140855e-02	k: 1075	n:100000
Cons ci ratio: 2.669422e-02	ci left: 1.750168e-01	ci right 1.797619e-01	k: 17738	n:100000
KS ci ratio: 1.321673e-01	ci left: 8.143371e-03	ci right 9.305393e-03	k: 871	n:100000
CUL7   100000 perm   27 sec   (3737 perm/sec)   p_kst 8.710000e-03   p_cons 1.773800e-01   p_joint 1.075000e-02

Joint ci ratio: 1.153944e-01	ci left: 9.782384e-03	ci right 1.098909e-02	k: 1141	n:110000
Cons ci ratio: 2.546615e-02	ci left: 1.749656e-01	ci right 1.794878e-01	k: 19494	n:110000
KS ci ratio: 1.260298e-01	ci left: 8.168445e-03	ci right 9.275873e-03	k: 958	n:110000
CUL7   110000 perm   30 sec   (3690 perm/sec)   p_kst 8.709091e-03   p_cons 1.772182e-01   p_joint 1.037273e-02

Joint ci ratio: 1.065667e-01	ci left: 1.055546e-02	ci right 1.175168e-02	k: 1337	n:120000
Cons ci ratio: 2.438287e-02	ci left: 1.750515e-01	ci right 1.793807e-01	k: 21265	n:120000
KS ci ratio: 1.203274e-01	ci left: 8.238886e-03	ci right 9.301725e-03	k: 1051	n:120000
CUL7   120000 perm   33 sec   (3647 perm/sec)   p_kst 8.758333e-03   p_cons 1.772083e-01   p_joint 1.114167e-02

Joint ci ratio: 1.051150e-01	ci left: 1.002792e-02	ci right 1.114792e-02	k: 1375	n:130000
Cons ci ratio: 2.344435e-02	ci left: 1.749133e-01	ci right 1.790703e-01	k: 23008	n:130000
KS ci ratio: 1.161565e-01	ci left: 8.179902e-03	ci right 9.196042e-03	k: 1128	n:130000
CUL7   130000 perm   36 sec   (3606 perm/sec)   p_kst 8.676923e-03   p_cons 1.769846e-01   p_joint 1.057692e-02

Joint ci ratio: 1.021605e-01	ci left: 9.875176e-03	ci right 1.094525e-02	k: 1456	n:140000
Cons ci ratio: 2.257435e-02	ci left: 1.752101e-01	ci right 1.792176e-01	k: 24809	n:140000
KS ci ratio: 1.119705e-01	ci left: 8.192388e-03	ci right 9.170982e-03	k: 1214	n:140000
CUL7   140000 perm   39 sec   (3565 perm/sec)   p_kst 8.671429e-03   p_cons 1.772071e-01   p_joint 1.040000e-02

Joint ci ratio: 9.340071e-02	ci left: 1.106425e-02	ci right 1.215475e-02	k: 1740	n:150000
Cons ci ratio: 2.177462e-02	ci left: 1.757353e-01	ci right 1.796105e-01	k: 26650	n:150000
KS ci ratio: 1.083328e-01	ci left: 8.184316e-03	ci right 9.128157e-03	k: 1297	n:150000
CUL7   150000 perm   43 sec   (3526 perm/sec)   p_kst 8.646667e-03   p_cons 1.776667e-01   p_joint 1.160000e-02

Joint ci ratio: 9.083324e-02	ci left: 1.098331e-02	ci right 1.203450e-02	k: 1840	n:160000
Cons ci ratio: 2.107721e-02	ci left: 1.758795e-01	ci right 1.796322e-01	k: 28440	n:160000
KS ci ratio: 1.047226e-01	ci left: 8.226403e-03	ci right 9.141534e-03	k: 1388	n:160000
CUL7   160000 perm   46 sec   (3488 perm/sec)   p_kst 8.675000e-03   p_cons 1.777500e-01   p_joint 1.150000e-02

Joint ci ratio: 8.272766e-02	ci left: 1.249573e-02	ci right 1.357980e-02	k: 2215	n:170000
Cons ci ratio: 2.042840e-02	ci left: 1.762135e-01	ci right 1.798563e-01	k: 30265	n:170000
KS ci ratio: 1.011410e-01	ci left: 8.315610e-03	ci right 9.207147e-03	k: 1488	n:170000
CUL7   170000 perm   49 sec   (3447 perm/sec)   p_kst 8.752941e-03   p_cons 1.780294e-01   p_joint 1.302941e-02

Joint ci ratio: 7.753952e-02	ci left: 1.345684e-02	ci right 1.454778e-02	k: 2519	n:180000
Cons ci ratio: 1.986466e-02	ci left: 1.760915e-01	ci right 1.796300e-01	k: 32014	n:180000
KS ci ratio: 9.805911e-02	ci left: 8.368274e-03	ci right 9.236546e-03	k: 1583	n:180000
CUL7   180000 perm   53 sec   (3411 perm/sec)   p_kst 8.794444e-03   p_cons 1.778556e-01   p_joint 1.399444e-02

Outputting figure to mutsig2_images.part000000000045/CUL7.6_5453_180000_0.0087944_0.17786_0.013994.png
                gene_name: CUL7
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.0088 
        ci_ks_bounds_left: 0.0084 
       ci_ks_bounds_right: 0.0092 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.015 

Current progress: 27 percent done.
CUX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.050099e-01	ci left: 1.158415e-01	ci right 1.287794e-01	k: 1222	n:10000
Cons ci ratio: 8.869635e-02	ci left: 1.561040e-01	ci right 1.706926e-01	k: 1633	n:10000
KS ci ratio: 9.138447e-02	ci left: 1.482523e-01	ci right 1.625490e-01	k: 1553	n:10000
CUX1   10000 perm   2 sec   (4778 perm/sec)   p_kst 1.553000e-01   p_cons 1.633000e-01   p_joint 1.222000e-01

Joint ci ratio: 6.884178e-02	ci left: 1.346767e-01	ci right 1.443284e-01	k: 2789	n:20000
Cons ci ratio: 6.110552e-02	ci left: 1.654100e-01	ci right 1.758860e-01	k: 3412	n:20000
KS ci ratio: 6.426499e-02	ci left: 1.517858e-01	ci right 1.619141e-01	k: 3136	n:20000
CUX1   20000 perm   5 sec   (4378 perm/sec)   p_kst 1.568000e-01   p_cons 1.706000e-01   p_joint 1.394500e-01

Outputting figure to mutsig2_images.part000000000045/CUX1.6_5499_20000_0.1568_0.1706_0.13945.png
                gene_name: CUX1
               theta_stop: 0.069 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 29 percent done.
CWC27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.020807e-02	ci left: 2.886490e-01	ci right 3.066690e-01	k: 2976	n:10000
Cons ci ratio: 4.731777e-02	ci left: 3.972498e-01	ci right 4.166044e-01	k: 4069	n:10000
KS ci ratio: 8.096203e-02	ci left: 1.821553e-01	ci right 1.976258e-01	k: 1898	n:10000
CWC27   10000 perm   2 sec   (6097 perm/sec)   p_kst 1.898000e-01   p_cons 4.069000e-01   p_joint 2.976000e-01

Outputting figure to mutsig2_images.part000000000045/CWC27.6_1475_10000_0.1898_0.4069_0.2976.png
                gene_name: CWC27
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 31 percent done.
CTSB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.972347e-02	ci left: 6.253754e-01	ci right 6.443460e-01	k: 6349	n:10000
Cons ci ratio: 5.426490e-02	ci left: 3.334940e-01	ci right 3.521976e-01	k: 3428	n:10000
KS ci ratio: 3.687980e-02	ci left: 5.205606e-01	ci right 5.402216e-01	k: 5304	n:10000
CTSB   10000 perm   2 sec   (5969 perm/sec)   p_kst 5.304000e-01   p_cons 3.428000e-01   p_joint 6.349000e-01

Outputting figure to mutsig2_images.part000000000045/CTSB.5_1056_10000_0.5304_0.3428_0.6349.png
                gene_name: CTSB
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 33 percent done.
CTSF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.321103e-02	ci left: 7.316880e-01	ci right 7.489718e-01	k: 7404	n:10000
Cons ci ratio: 4.937791e-02	ci left: 3.769402e-01	ci right 3.961259e-01	k: 3865	n:10000
KS ci ratio: 2.916180e-02	ci left: 6.342228e-01	ci right 6.530934e-01	k: 6437	n:10000
CTSF   10000 perm   2 sec   (5161 perm/sec)   p_kst 6.437000e-01   p_cons 3.865000e-01   p_joint 7.404000e-01

Outputting figure to mutsig2_images.part000000000045/CTSF.5_1507_10000_0.6437_0.3865_0.7404.png
                gene_name: CTSF
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 35 percent done.
CUL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.121080e-02	ci left: 1.487429e-01	ci right 1.630582e-01	k: 1558	n:10000
Cons ci ratio: 3.344976e-02	ci left: 5.688503e-01	ci right 5.883039e-01	k: 5786	n:10000
KS ci ratio: 1.379586e-01	ci left: 6.952474e-02	ci right 7.992463e-02	k: 746	n:10000
CUL2   10000 perm   2 sec   (5571 perm/sec)   p_kst 7.460000e-02   p_cons 5.786000e-01   p_joint 1.558000e-01

Joint ci ratio: 7.037352e-02	ci left: 1.295536e-01	ci right 1.390530e-01	k: 2685	n:20000
Cons ci ratio: 2.330887e-02	ci left: 5.788861e-01	ci right 5.925890e-01	k: 11715	n:20000
KS ci ratio: 9.805090e-02	ci left: 7.036036e-02	ci right 7.766407e-02	k: 1479	n:20000
CUL2   20000 perm   4 sec   (5079 perm/sec)   p_kst 7.395000e-02   p_cons 5.857500e-01   p_joint 1.342500e-01

Outputting figure to mutsig2_images.part000000000045/CUL2.5_2318_20000_0.07395_0.58575_0.13425.png
                gene_name: CUL2
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 37 percent done.
CUL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
Cons ci ratio: 2.631913e-01	ci left: 1.884073e-02	ci right 2.464254e-02	k: 216	n:10000
KS ci ratio: 1.456935e-01	ci left: 6.256264e-02	ci right 7.249110e-02	k: 674	n:10000
CUL5   10000 perm   2 sec   (5723 perm/sec)   p_kst 6.740000e-02   p_cons 2.160000e-02   p_joint 1.130000e-02

Joint ci ratio: 1.788696e-01	ci left: 2.134943e-02	ci right 2.559067e-02	k: 468	n:20000
Cons ci ratio: 1.816657e-01	ci left: 2.068037e-02	ci right 2.485997e-02	k: 454	n:20000
KS ci ratio: 1.068507e-01	ci left: 5.967148e-02	ci right 6.645624e-02	k: 1260	n:20000
CUL5   20000 perm   4 sec   (5179 perm/sec)   p_kst 6.300000e-02   p_cons 2.270000e-02   p_joint 2.340000e-02

Joint ci ratio: 1.676370e-01	ci left: 1.639785e-02	ci right 1.942987e-02	k: 536	n:30000
Cons ci ratio: 1.517203e-01	ci left: 2.011312e-02	ci right 2.344705e-02	k: 652	n:30000
KS ci ratio: 8.600098e-02	ci left: 6.197460e-02	ci right 6.757672e-02	k: 1942	n:30000
CUL5   30000 perm   6 sec   (4996 perm/sec)   p_kst 6.473333e-02   p_cons 2.173333e-02   p_joint 1.786667e-02

Joint ci ratio: 1.449724e-01	ci left: 1.664736e-02	ci right 1.927329e-02	k: 717	n:40000
Cons ci ratio: 1.309847e-01	ci left: 2.046382e-02	ci right 2.335617e-02	k: 875	n:40000
KS ci ratio: 7.386636e-02	ci left: 6.334026e-02	ci right 6.822301e-02	k: 2630	n:40000
CUL5   40000 perm   8 sec   (4850 perm/sec)   p_kst 6.575000e-02   p_cons 2.187500e-02   p_joint 1.792500e-02

Joint ci ratio: 1.162908e-01	ci left: 2.092638e-02	ci right 2.352950e-02	k: 1110	n:50000
Cons ci ratio: 1.153388e-01	ci left: 2.127617e-02	ci right 2.389966e-02	k: 1128	n:50000
KS ci ratio: 6.595827e-02	ci left: 6.379961e-02	ci right 6.817095e-02	k: 3298	n:50000
CUL5   50000 perm   11 sec   (4755 perm/sec)   p_kst 6.596000e-02   p_cons 2.256000e-02   p_joint 2.220000e-02

Joint ci ratio: 1.112212e-01	ci left: 1.915408e-02	ci right 2.142599e-02	k: 1216	n:60000
Cons ci ratio: 1.053613e-01	ci left: 2.136063e-02	ci right 2.375253e-02	k: 1352	n:60000
KS ci ratio: 6.049665e-02	ci left: 6.341807e-02	ci right 6.739076e-02	k: 3923	n:60000
CUL5   60000 perm   13 sec   (4664 perm/sec)   p_kst 6.538333e-02   p_cons 2.253333e-02   p_joint 2.026667e-02

Joint ci ratio: 1.056544e-01	ci left: 1.826582e-02	ci right 2.031716e-02	k: 1349	n:70000
Cons ci ratio: 9.797518e-02	ci left: 2.126068e-02	ci right 2.346487e-02	k: 1564	n:70000
KS ci ratio: 5.603527e-02	ci left: 6.350893e-02	ci right 6.718434e-02	k: 4573	n:70000
CUL5   70000 perm   15 sec   (4565 perm/sec)   p_kst 6.532857e-02   p_cons 2.234286e-02   p_joint 1.927143e-02

Joint ci ratio: 8.883215e-02	ci left: 2.270589e-02	ci right 2.482884e-02	k: 1900	n:80000
Cons ci ratio: 9.195217e-02	ci left: 2.119015e-02	ci right 2.324470e-02	k: 1776	n:80000
KS ci ratio: 5.227423e-02	ci left: 6.395564e-02	ci right 6.740094e-02	k: 5253	n:80000
CUL5   80000 perm   18 sec   (4494 perm/sec)   p_kst 6.566250e-02   p_cons 2.220000e-02   p_joint 2.375000e-02

Outputting figure to mutsig2_images.part000000000045/CUL5.5_2419_80000_0.065662_0.0222_0.02375.png
                gene_name: CUL5
               theta_stop: 0.092 
                    nperm: 80000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 39 percent done.
CUZD1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.228605e-02	ci left: 4.522906e-01	ci right 4.719315e-01	k: 4621	n:10000
Cons ci ratio: 8.802117e-02	ci left: 1.581661e-01	ci right 1.728293e-01	k: 1654	n:10000
KS ci ratio: 4.099902e-02	ci left: 4.676679e-01	ci right 4.873452e-01	k: 4775	n:10000
CUZD1   10000 perm   2 sec   (5896 perm/sec)   p_kst 4.775000e-01   p_cons 1.654000e-01   p_joint 4.621000e-01

Outputting figure to mutsig2_images.part000000000045/CUZD1.4_1860_10000_0.4775_0.1654_0.4621.png
                gene_name: CUZD1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 41 percent done.
CTPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.117623e-02	ci left: 7.657748e-01	ci right 7.822653e-01	k: 7741	n:10000
Cons ci ratio: 9.224974e-03	ci left: 9.430505e-01	ci right 9.518865e-01	k: 9476	n:10000
KS ci ratio: 3.245171e-02	ci left: 5.835963e-01	ci right 6.029494e-01	k: 5933	n:10000
CTPS   10000 perm   2 sec   (6567 perm/sec)   p_kst 5.933000e-01   p_cons 9.476000e-01   p_joint 7.741000e-01

Outputting figure to mutsig2_images.part000000000045/CTPS.4_1844_10000_0.5933_0.9476_0.7741.png
                gene_name: CTPS
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 43 percent done.
CTPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.715849e-01	ci left: 4.533038e-02	ci right 5.393440e-02	k: 495	n:10000
Cons ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
KS ci ratio: 1.634004e-02	ci left: 8.448877e-01	ci right 8.589066e-01	k: 8520	n:10000
CTPS2   10000 perm   2 sec   (6201 perm/sec)   p_kst 8.520000e-01   p_cons 1.410000e-02   p_joint 4.950000e-02

Joint ci ratio: 1.213315e-01	ci left: 4.658307e-02	ci right 5.264873e-02	k: 991	n:20000
Cons ci ratio: 2.356187e-01	ci left: 1.204081e-02	ci right 1.530284e-02	k: 272	n:20000
KS ci ratio: 1.130498e-02	ci left: 8.524770e-01	ci right 8.622188e-01	k: 17148	n:20000
CTPS2   20000 perm   4 sec   (5506 perm/sec)   p_kst 8.574000e-01   p_cons 1.360000e-02   p_joint 4.955000e-02

Joint ci ratio: 8.490812e-02	ci left: 6.350998e-02	ci right 6.917435e-02	k: 1989	n:30000
Cons ci ratio: 1.791977e-01	ci left: 1.429182e-02	ci right 1.713642e-02	k: 470	n:30000
KS ci ratio: 9.295579e-03	ci left: 8.516389e-01	ci right 8.596255e-01	k: 25670	n:30000
CTPS2   30000 perm   6 sec   (5230 perm/sec)   p_kst 8.556667e-01   p_cons 1.566667e-02   p_joint 6.630000e-02

Joint ci ratio: 7.442812e-02	ci left: 6.243127e-02	ci right 6.728213e-02	k: 2593	n:40000
Cons ci ratio: 1.538273e-01	ci left: 1.474499e-02	ci right 1.722599e-02	k: 638	n:40000
KS ci ratio: 8.026203e-03	ci left: 8.529250e-01	ci right 8.598232e-01	k: 34256	n:40000
CTPS2   40000 perm   8 sec   (5063 perm/sec)   p_kst 8.564000e-01   p_cons 1.595000e-02   p_joint 6.482500e-02

Joint ci ratio: 5.686180e-02	ci left: 8.432652e-02	ci right 8.928158e-02	k: 4339	n:50000
Cons ci ratio: 1.380053e-01	ci left: 1.478310e-02	ci right 1.699362e-02	k: 793	n:50000
KS ci ratio: 7.176469e-03	ci left: 8.533762e-01	ci right 8.595424e-01	k: 42824	n:50000
CTPS2   50000 perm   10 sec   (4936 perm/sec)   p_kst 8.564800e-01   p_cons 1.586000e-02   p_joint 8.678000e-02

Joint ci ratio: 4.980492e-02	ci left: 9.124779e-02	ci right 9.592494e-02	k: 5614	n:60000
Cons ci ratio: 1.246453e-01	ci left: 1.520497e-02	ci right 1.724221e-02	k: 972	n:60000
KS ci ratio: 6.563944e-03	ci left: 8.531652e-01	ci right 8.588003e-01	k: 51360	n:60000
CTPS2   60000 perm   12 sec   (4815 perm/sec)   p_kst 8.560000e-01   p_cons 1.620000e-02   p_joint 9.356667e-02

Joint ci ratio: 5.169265e-02	ci left: 7.394855e-02	ci right 7.788669e-02	k: 5313	n:70000
Cons ci ratio: 1.156151e-01	ci left: 1.522222e-02	ci right 1.710391e-02	k: 1130	n:70000
KS ci ratio: 6.090385e-03	ci left: 8.528303e-01	ci right 8.580544e-01	k: 59882	n:70000
CTPS2   70000 perm   15 sec   (4713 perm/sec)   p_kst 8.554571e-01   p_cons 1.614286e-02   p_joint 7.590000e-02

Joint ci ratio: 4.623749e-02	ci left: 8.052822e-02	ci right 8.435212e-02	k: 6594	n:80000
Cons ci ratio: 1.080874e-01	ci left: 1.530001e-02	ci right 1.706032e-02	k: 1293	n:80000
KS ci ratio: 5.715312e-03	ci left: 8.522011e-01	ci right 8.570981e-01	k: 68373	n:80000
CTPS2   80000 perm   17 sec   (4625 perm/sec)   p_kst 8.546625e-01   p_cons 1.616250e-02   p_joint 8.242500e-02

Joint ci ratio: 4.810096e-02	ci left: 6.706682e-02	ci right 7.038327e-02	k: 6184	n:90000
Cons ci ratio: 1.016842e-01	ci left: 1.541778e-02	ci right 1.708027e-02	k: 1461	n:90000
KS ci ratio: 4.970147e-03	ci left: 8.714226e-01	ci right 8.757755e-01	k: 78625	n:90000
CTPS2   90000 perm   20 sec   (4463 perm/sec)   p_kst 8.736111e-01   p_cons 1.623333e-02   p_joint 6.871111e-02

Joint ci ratio: 4.216042e-02	ci left: 7.788998e-02	ci right 8.125445e-02	k: 7956	n:100000
Cons ci ratio: 9.663093e-02	ci left: 1.540708e-02	ci right 1.698117e-02	k: 1618	n:100000
KS ci ratio: 4.713402e-03	ci left: 8.716152e-01	ci right 8.757431e-01	k: 87369	n:100000
CTPS2   100000 perm   23 sec   (4386 perm/sec)   p_kst 8.736900e-01   p_cons 1.618000e-02   p_joint 7.956000e-02

Outputting figure to mutsig2_images.part000000000045/CTPS2.4_1829_100000_0.87369_0.01618_0.07956.png
                gene_name: CTPS2
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.081 

Current progress: 45 percent done.
CTSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.058215e-02	ci left: 7.757010e-01	ci right 7.919333e-01	k: 7839	n:10000
KS ci ratio: 5.641285e-03	ci left: 9.768488e-01	ci right 9.824669e-01	k: 9798	n:10000
CTSL1   10000 perm   2 sec   (6511 perm/sec)   p_kst 9.798000e-01   p_cons 7.839000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CTSL1.4_1030_10000_0.9798_0.7839_1.png
                gene_name: CTSL1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
CTSL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.348406e-02	ci left: 5.683489e-01	ci right 5.878056e-01	k: 5781	n:10000
KS ci ratio: 1.163479e-02	ci left: 9.135826e-01	ci right 9.243718e-01	k: 9191	n:10000
CTSL2   10000 perm   2 sec   (6434 perm/sec)   p_kst 9.191000e-01   p_cons 5.781000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CTSL2.4_1033_10000_0.9191_0.5781_1.png
                gene_name: CTSL2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
CWC22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.251794e-02	ci left: 2.732942e-01	ci right 2.910328e-01	k: 2821	n:10000
Cons ci ratio: 4.686016e-02	ci left: 4.019315e-01	ci right 4.213200e-01	k: 4116	n:10000
KS ci ratio: 7.832462e-02	ci left: 1.923954e-01	ci right 2.081796e-01	k: 2002	n:10000
CWC22   10000 perm   2 sec   (5996 perm/sec)   p_kst 2.002000e-01   p_cons 4.116000e-01   p_joint 2.821000e-01

Outputting figure to mutsig2_images.part000000000045/CWC22.4_2803_10000_0.2002_0.4116_0.2821.png
                gene_name: CWC22
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 51 percent done.
CXADR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.755268e-02	ci left: 3.076861e-01	ci right 3.260207e-01	k: 3168	n:10000
Cons ci ratio: 3.953258e-02	ci left: 4.858530e-01	ci right 5.055495e-01	k: 4957	n:10000
KS ci ratio: 6.652915e-02	ci left: 2.490504e-01	ci right 2.662910e-01	k: 2576	n:10000
CXADR   10000 perm   2 sec   (6385 perm/sec)   p_kst 2.576000e-01   p_cons 4.957000e-01   p_joint 3.168000e-01

Outputting figure to mutsig2_images.part000000000045/CXADR.4_1126_10000_0.2576_0.4957_0.3168.png
                gene_name: CXADR
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 53 percent done.
CXCR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.436366e-02	ci left: 5.556165e-01	ci right 5.751454e-01	k: 5654	n:10000
Cons ci ratio: 2.184721e-02	ci left: 7.545395e-01	ci right 7.713071e-01	k: 7630	n:10000
KS ci ratio: 4.589673e-02	ci left: 4.119951e-01	ci right 4.314506e-01	k: 4217	n:10000
CXCR4   10000 perm   2 sec   (6306 perm/sec)   p_kst 4.217000e-01   p_cons 7.630000e-01   p_joint 5.654000e-01

Outputting figure to mutsig2_images.part000000000045/CXCR4.4_1094_10000_0.4217_0.763_0.5654.png
                gene_name: CXCR4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 55 percent done.
CTSA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.389693e-02	ci left: 8.820651e-01	ci right 8.945077e-01	k: 8884	n:10000
KS ci ratio: 2.852276e-02	ci left: 6.443816e-01	ci right 6.631288e-01	k: 6538	n:10000
CTSA   10000 perm   2 sec   (6225 perm/sec)   p_kst 6.538000e-01   p_cons 8.884000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CTSA.3_1557_10000_0.6538_0.8884_1.png
                gene_name: CTSA
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
CTSD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.594406e-02	ci left: 3.199905e-01	ci right 3.385090e-01	k: 3292	n:10000
Cons ci ratio: 3.920196e-02	ci left: 4.900514e-01	ci right 5.097486e-01	k: 4999	n:10000
KS ci ratio: 6.881274e-02	ci left: 2.364969e-01	ci right 2.534520e-01	k: 2449	n:10000
CTSD   10000 perm   2 sec   (5814 perm/sec)   p_kst 2.449000e-01   p_cons 4.999000e-01   p_joint 3.292000e-01

Outputting figure to mutsig2_images.part000000000045/CTSD.3_1275_10000_0.2449_0.4999_0.3292.png
                gene_name: CTSD
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 59 percent done.
CTSG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.327139e-02	ci left: 7.306776e-01	ci right 7.479828e-01	k: 7394	n:10000
KS ci ratio: 1.412003e-02	ci left: 8.787895e-01	ci right 8.913852e-01	k: 8852	n:10000
CTSG   10000 perm   1 sec   (7461 perm/sec)   p_kst 8.852000e-01   p_cons 7.394000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CTSG.3_788_10000_0.8852_0.7394_1.png
                gene_name: CTSG
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
CWF19L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.361463e-02	ci left: 5.664436e-01	ci right 5.859120e-01	k: 5762	n:10000
Cons ci ratio: 7.027581e-02	ci left: 2.288905e-01	ci right 2.456629e-01	k: 2372	n:10000
KS ci ratio: 2.161163e-02	ci left: 7.584861e-01	ci right 7.751582e-01	k: 7669	n:10000
CWF19L1   10000 perm   2 sec   (6591 perm/sec)   p_kst 7.669000e-01   p_cons 2.372000e-01   p_joint 5.762000e-01

Outputting figure to mutsig2_images.part000000000045/CWF19L1.3_1673_10000_0.7669_0.2372_0.5762.png
                gene_name: CWF19L1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 63 percent done.
CWH43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.264030e-02	ci left: 5.807868e-01	ci right 6.001604e-01	k: 5905	n:10000
KS ci ratio: 1.226434e-02	ci left: 9.051459e-01	ci right 9.164135e-01	k: 9109	n:10000
CWH43   10000 perm   2 sec   (6134 perm/sec)   p_kst 9.109000e-01   p_cons 5.905000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CWH43.3_2164_10000_0.9109_0.5905_1.png
                gene_name: CWH43
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
CXCL11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.098851e-02	ci left: 7.689140e-01	ci right 7.853243e-01	k: 7772	n:10000
KS ci ratio: 3.301279e-02	ci left: 5.752692e-01	ci right 5.946812e-01	k: 5850	n:10000
CXCL11   10000 perm   1 sec   (7830 perm/sec)   p_kst 5.850000e-01   p_cons 7.772000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CXCL11.3_301_10000_0.585_0.7772_1.png
                gene_name: CXCL11
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
CXCL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.201483e-01	ci left: 9.039166e-02	ci right 1.020448e-01	k: 961	n:10000
Cons ci ratio: 3.853352e-02	ci left: 4.986503e-01	ci right 5.183447e-01	k: 5085	n:10000
KS ci ratio: 1.381586e-01	ci left: 6.933115e-02	ci right 7.971834e-02	k: 744	n:10000
CXCL9   10000 perm   1 sec   (6857 perm/sec)   p_kst 7.440000e-02   p_cons 5.085000e-01   p_joint 9.610000e-02

Joint ci ratio: 9.352068e-02	ci left: 7.696131e-02	ci right 8.456110e-02	k: 1614	n:20000
Cons ci ratio: 2.708626e-02	ci left: 5.045461e-01	ci right 5.184506e-01	k: 10230	n:20000
KS ci ratio: 9.954792e-02	ci left: 6.835732e-02	ci right 7.556772e-02	k: 1438	n:20000
CXCL9   20000 perm   3 sec   (6111 perm/sec)   p_kst 7.190000e-02   p_cons 5.115000e-01   p_joint 8.070000e-02

Outputting figure to mutsig2_images.part000000000045/CXCL9.3_394_20000_0.0719_0.5115_0.0807.png
                gene_name: CXCL9
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.085 

Current progress: 69 percent done.
CXCR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.983924e-02	ci left: 7.880677e-01	ci right 8.039595e-01	k: 7961	n:10000
Cons ci ratio: 4.800080e-02	ci left: 3.903785e-01	ci right 4.096798e-01	k: 4000	n:10000
KS ci ratio: 9.344901e-03	ci left: 9.417001e-01	ci right 9.506377e-01	k: 9463	n:10000
CXCR5   10000 perm   1 sec   (6845 perm/sec)   p_kst 9.463000e-01   p_cons 4.000000e-01   p_joint 7.961000e-01

Outputting figure to mutsig2_images.part000000000045/CXCR5.3_1127_10000_0.9463_0.4_0.7961.png
                gene_name: CXCR5
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 71 percent done.
CXorf36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.404356e-02	ci left: 8.799154e-01	ci right 8.924587e-01	k: 8863	n:10000
KS ci ratio: 9.953727e-03	ci left: 9.346478e-01	ci right 9.440942e-01	k: 9395	n:10000
CXorf36   10000 perm   2 sec   (6210 perm/sec)   p_kst 9.395000e-01   p_cons 8.863000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CXorf36.3_1377_10000_0.9395_0.8863_1.png
                gene_name: CXorf36
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
CTRL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.897433e-02	ci left: 3.808216e-01	ci right 4.000423e-01	k: 3904	n:10000
KS ci ratio: 2.507590e-02	ci left: 7.005927e-01	ci right 7.184851e-01	k: 7096	n:10000
CTRL   10000 perm   1 sec   (7004 perm/sec)   p_kst 7.096000e-01   p_cons 3.904000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CTRL.2_823_10000_0.7096_0.3904_1.png
                gene_name: CTRL
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
CTSH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.609972e-02	ci left: 8.486593e-01	ci right 8.625329e-01	k: 8557	n:10000
Cons ci ratio: 4.032327e-02	ci left: 4.759595e-01	ci right 4.956488e-01	k: 4858	n:10000
KS ci ratio: 5.084582e-02	ci left: 3.632113e-01	ci right 3.822629e-01	k: 3727	n:10000
CTSH   10000 perm   1 sec   (6985 perm/sec)   p_kst 3.727000e-01   p_cons 4.858000e-01   p_joint 8.557000e-01

Outputting figure to mutsig2_images.part000000000045/CTSH.2_1056_10000_0.3727_0.4858_0.8557.png
                gene_name: CTSH
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 78 percent done.
CTSS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.804254e-03	ci left: 9.364092e-01	ci right 9.457318e-01	k: 9412	n:10000
Cons ci ratio: 2.525240e-02	ci left: 6.976675e-01	ci right 7.156120e-01	k: 7067	n:10000
KS ci ratio: 2.478420e-02	ci left: 7.054353e-01	ci right 7.232397e-01	k: 7144	n:10000
CTSS   10000 perm   1 sec   (7085 perm/sec)   p_kst 7.144000e-01   p_cons 7.067000e-01   p_joint 9.412000e-01

Outputting figure to mutsig2_images.part000000000045/CTSS.2_1024_10000_0.7144_0.7067_0.9412.png
                gene_name: CTSS
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 80 percent done.
CTTNBP2NL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.549534e-02	ci left: 8.580439e-01	ci right 8.715428e-01	k: 8649	n:10000
Cons ci ratio: 3.333331e-02	ci left: 5.705552e-01	ci right 5.899980e-01	k: 5803	n:10000
KS ci ratio: 3.253919e-02	ci left: 5.822919e-01	ci right 6.016545e-01	k: 5920	n:10000
CTTNBP2NL   10000 perm   2 sec   (6030 perm/sec)   p_kst 5.920000e-01   p_cons 5.803000e-01   p_joint 8.649000e-01

Outputting figure to mutsig2_images.part000000000045/CTTNBP2NL.2_1936_10000_0.592_0.5803_0.8649.png
                gene_name: CTTNBP2NL
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 82 percent done.
CTXN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.677805e-02	ci left: 6.725690e-01	ci right 6.909251e-01	k: 6818	n:10000
KS ci ratio: 2.133959e-02	ci left: 7.630411e-01	ci right 7.796005e-01	k: 7714	n:10000
CTXN3   10000 perm   1 sec   (7439 perm/sec)   p_kst 7.714000e-01   p_cons 6.818000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CTXN3.2_250_10000_0.7714_0.6818_1.png
                gene_name: CTXN3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
CUL4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.530301e-02	ci left: 5.422895e-01	ci right 5.618801e-01	k: 5521	n:10000
Cons ci ratio: 4.042832e-02	ci left: 4.746606e-01	ci right 4.943484e-01	k: 4845	n:10000
KS ci ratio: 6.250251e-02	ci left: 2.733932e-01	ci right 2.911338e-01	k: 2822	n:10000
CUL4A   10000 perm   2 sec   (5439 perm/sec)   p_kst 2.822000e-01   p_cons 4.845000e-01   p_joint 5.521000e-01

Outputting figure to mutsig2_images.part000000000045/CUL4A.2_2360_10000_0.2822_0.4845_0.5521.png
                gene_name: CUL4A
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 86 percent done.
CX3CR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.317481e-02	ci left: 7.322943e-01	ci right 7.495652e-01	k: 7410	n:10000
Cons ci ratio: 1.363646e-02	ci left: 8.858546e-01	ci right 8.981160e-01	k: 8921	n:10000
KS ci ratio: 4.473999e-02	ci left: 4.244558e-01	ci right 4.439826e-01	k: 4342	n:10000
CX3CR1   10000 perm   2 sec   (6236 perm/sec)   p_kst 4.342000e-01   p_cons 8.921000e-01   p_joint 7.410000e-01

Outputting figure to mutsig2_images.part000000000045/CX3CR1.2_1172_10000_0.4342_0.8921_0.741.png
                gene_name: CX3CR1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 88 percent done.
CXCL14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.356197e-02	ci left: 3.393548e-01	ci right 3.581334e-01	k: 3487	n:10000
Cons ci ratio: 6.379177e-02	ci left: 2.652752e-01	ci right 2.828566e-01	k: 2740	n:10000
KS ci ratio: 5.979314e-02	ci left: 2.915232e-01	ci right 3.095931e-01	k: 3005	n:10000
CXCL14   10000 perm   1 sec   (7319 perm/sec)   p_kst 3.005000e-01   p_cons 2.740000e-01   p_joint 3.487000e-01

Outputting figure to mutsig2_images.part000000000045/CXCL14.2_352_10000_0.3005_0.274_0.3487.png
                gene_name: CXCL14
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 90 percent done.
CXCL17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.878641e-03	ci left: 9.882892e-01	ci right 9.922172e-01	k: 9904	n:10000
Cons ci ratio: 2.912367e-02	ci left: 6.348262e-01	ci right 6.536897e-01	k: 6443	n:10000
KS ci ratio: 4.430567e-02	ci left: 4.292423e-01	ci right 4.487932e-01	k: 4390	n:10000
CXCL17   10000 perm   1 sec   (7652 perm/sec)   p_kst 4.390000e-01   p_cons 6.443000e-01   p_joint 9.904000e-01

Outputting figure to mutsig2_images.part000000000045/CXCL17.2_376_10000_0.439_0.6443_0.9904.png
                gene_name: CXCL17
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 92 percent done.
CXCL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.824610e-02	ci left: 6.488086e-01	ci right 6.674992e-01	k: 6582	n:10000
KS ci ratio: 8.067374e-02	ci left: 1.832380e-01	ci right 1.987424e-01	k: 1909	n:10000
CXCL5   10000 perm   1 sec   (7652 perm/sec)   p_kst 1.909000e-01   p_cons 6.582000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CXCL5.2_361_10000_0.1909_0.6582_1.png
                gene_name: CXCL5
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
CXCR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.693080e-03	ci left: 9.938690e-01	ci right 9.966303e-01	k: 9954	n:10000
Cons ci ratio: 9.187825e-03	ci left: 9.434661e-01	ci right 9.522706e-01	k: 9480	n:10000
KS ci ratio: 4.264082e-03	ci left: 9.861030e-01	ci right 9.904055e-01	k: 9884	n:10000
CXCR2   10000 perm   1 sec   (6691 perm/sec)   p_kst 9.884000e-01   p_cons 9.480000e-01   p_joint 9.954000e-01

Outputting figure to mutsig2_images.part000000000045/CXCR2.2_1087_10000_0.9884_0.948_0.9954.png
                gene_name: CXCR2
               theta_stop: 0.0092 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1.00 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 96 percent done.
CXXC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.964445e-02	ci left: 1.871758e-01	ci right 2.028023e-01	k: 1949	n:10000
Cons ci ratio: 6.548479e-02	ci left: 2.550834e-01	ci right 2.724544e-01	k: 2637	n:10000
KS ci ratio: 4.872833e-02	ci left: 3.832104e-01	ci right 4.024520e-01	k: 3928	n:10000
CXXC1   10000 perm   1 sec   (6669 perm/sec)   p_kst 3.928000e-01   p_cons 2.637000e-01   p_joint 1.949000e-01

Outputting figure to mutsig2_images.part000000000045/CXXC1.2_2043_10000_0.3928_0.2637_0.1949.png
                gene_name: CXXC1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 98 percent done.
CXorf21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.443180e-02	ci left: 4.278462e-01	ci right 4.473902e-01	k: 4376	n:10000
KS ci ratio: 1.202125e-02	ci left: 9.084365e-01	ci right 9.195210e-01	k: 9141	n:10000
CXorf21   10000 perm   1 sec   (6852 perm/sec)   p_kst 9.141000e-01   p_cons 4.376000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000045/CXorf21.2_910_10000_0.9141_0.4376_1.png
                gene_name: CXorf21
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000045
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 45 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1703>
Subject: Job 9893901: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1703>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000046> was used as the working directory.
Started at Sat Oct  6 00:04:38 2012
Results reported at Sat Oct  6 01:37:56 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000046.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000046.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 46  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000046.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   5667.16 sec.
    Max Memory :      3553 MB
    Max Swap   :      5926 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
46
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 46
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 46: processing genes 4058 - 4147
Calculating significance of each gene.
Using projection method.
4058	CXorf57	7.431215e-01
4059	CXorf58	3.072999e-02
4060	CXorf59	2.451301e-03
4061	CXorf61	2.805953e-01
4062	CXorf65	8.556490e-02
4063	CXorf66	1.446731e-02
4064	CYB561	1
4065	CYB561D1	5.864110e-01
4066	CYB561D2	1
4067	CYB5A	5.406495e-01
4068	CYB5B	1
4069	CYB5D1	1.725189e-01
4070	CYB5D2	1
4071	CYB5R1	1.702685e-01
4072	CYB5R2	3.831788e-01
4073	CYB5R3	6.143941e-01
4074	CYB5R4	4.484158e-02
4075	CYB5RL	7.788830e-01
4076	CYBA	1
4077	CYBASC3	3.485567e-01
4078	CYBB	5.312072e-01
4079	CYBRD1	2.207949e-01
4080	CYC1	5.948206e-01
4081	CYCS	1
4082	CYFIP1	8.101390e-01
4083	CYFIP2	6.974077e-01
4084	CYGB	4.842293e-01
4085	CYHR1	1
4086	CYLC1	7.575934e-03
4087	CYLC2	5.610605e-03
4088	CYLD	5.408794e-01
4089	CYP11A1	1.395587e-01
4090	CYP11B1	9.297663e-04
4091	CYP11B2	2.417002e-01
4092	CYP17A1	7.874646e-01
4093	CYP19A1	1.514800e-03
4094	CYP1A1	8.833842e-03
4095	CYP1A2	3.973903e-01
4096	CYP1B1	5.566563e-01
4097	CYP20A1	3.748331e-01
4098	CYP21A2	7.120936e-01
4099	CYP24A1	6.111594e-01
4100	CYP26A1	8.380418e-01
4101	CYP26B1	9.252046e-01
4102	CYP26C1	1
4103	CYP27A1	5.929102e-01
4104	CYP27B1	4.843728e-01
4105	CYP27C1	2.389970e-01
4106	CYP2A13	7.183533e-02
4107	CYP2A6	2.093162e-01
4108	CYP2A7	2.085775e-01
4109	CYP2B6	1
4110	CYP2C18	6.910853e-01
4111	CYP2C19	1.099179e-01
4112	CYP2C8	2.728037e-01
4113	CYP2C9	6.917955e-02
4114	CYP2D6	1
4115	CYP2E1	5.707953e-02
4116	CYP2F1	4.176745e-01
4117	CYP2J2	1.661183e-01
4118	CYP2R1	3.069768e-01
4119	CYP2S1	4.104553e-01
4120	CYP2U1	8.743524e-01
4121	CYP2W1	7.506550e-01
4122	CYP39A1	3.586120e-01
4123	CYP3A4	8.600320e-01
4124	CYP3A43	9.101117e-01
4125	CYP3A5	3.744901e-01
4126	CYP3A7	9.975059e-03
4127	CYP46A1	3.553500e-01
4128	CYP4A11	6.301316e-01
4129	CYP4A22	4.940698e-01
4130	CYP4B1	1.000728e-02
4131	CYP4F11	6.977217e-01
4132	CYP4F12	7.710705e-02
4133	CYP4F2	3.484151e-02
4134	CYP4F22	9.766466e-02
4135	CYP4F3	6.350731e-01
4136	CYP4F8	5.055250e-01
4137	CYP4V2	6.521778e-01
4138	CYP4X1	1
4139	CYP4Z1	4.124154e-01
4140	CYP51A1	5.978779e-01
4141	CYP7A1	1.904682e-01
4142	CYP7B1	1.089221e-03
4143	CYP8B1	2.192144e-01
4144	CYR61	5.861644e-01
4145	CYS1	1
4146	CYSLTR1	1.727576e-01
4147	CYSLTR2	2.882141e-02
Done

Running MutSig 2:
Scatter job 46: processing genes 4058 - 4147
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
CYP11B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.423853e-02	ci left: 7.145185e-01	ci right 7.321512e-01	k: 7234	n:10000
Cons ci ratio: 2.832774e-02	ci left: 6.475005e-01	ci right 6.662080e-01	k: 6569	n:10000
KS ci ratio: 3.571888e-02	ci left: 5.364800e-01	ci right 5.560930e-01	k: 5463	n:10000
CYP11B1   10000 perm   2 sec   (4841 perm/sec)   p_kst 5.463000e-01   p_cons 6.569000e-01   p_joint 7.234000e-01

Outputting figure to mutsig2_images.part000000000046/CYP11B1.9_1548_10000_0.5463_0.6569_0.7234.png
                gene_name: CYP11B1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 2 percent done.
CYP4B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.594231e-02	ci left: 6.862735e-01	ci right 7.044125e-01	k: 6954	n:10000
Cons ci ratio: 3.311486e-02	ci left: 5.737646e-01	ci right 5.931867e-01	k: 5835	n:10000
KS ci ratio: 3.265380e-02	ci left: 5.805862e-01	ci right 5.999612e-01	k: 5903	n:10000
CYP4B1   10000 perm   2 sec   (4636 perm/sec)   p_kst 5.903000e-01   p_cons 5.835000e-01   p_joint 6.954000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4B1.9_1587_10000_0.5903_0.5835_0.6954.png
                gene_name: CYP4B1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 3 percent done.
CYLC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.686016e-02	ci left: 4.019315e-01	ci right 4.213200e-01	k: 4116	n:10000
Cons ci ratio: 1.146253e-01	ci left: 9.866755e-02	ci right 1.107638e-01	k: 1046	n:10000
KS ci ratio: 6.377672e-03	ci left: 9.710070e-01	ci right 9.773127e-01	k: 9743	n:10000
CYLC1   10000 perm   2 sec   (5810 perm/sec)   p_kst 9.743000e-01   p_cons 1.046000e-01   p_joint 4.116000e-01

Joint ci ratio: 3.927804e-02	ci left: 3.258711e-01	ci right 3.389776e-01	k: 6648	n:20000
Cons ci ratio: 8.457082e-02	ci left: 9.288305e-02	ci right 1.011345e-01	k: 1939	n:20000
KS ci ratio: 4.865679e-03	ci left: 9.676971e-01	ci right 9.724649e-01	k: 19403	n:20000
CYLC1   20000 perm   4 sec   (5034 perm/sec)   p_kst 9.701500e-01   p_cons 9.695000e-02   p_joint 3.324000e-01

Outputting figure to mutsig2_images.part000000000046/CYLC1.8_1976_20000_0.97015_0.09695_0.3324.png
                gene_name: CYLC1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 5 percent done.
CYLC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.531331e-02	ci left: 6.966589e-01	ci right 7.146211e-01	k: 7057	n:10000
Cons ci ratio: 4.983906e-02	ci left: 3.725620e-01	ci right 3.917067e-01	k: 3821	n:10000
KS ci ratio: 1.333732e-02	ci left: 8.901588e-01	ci right 9.022093e-01	k: 8963	n:10000
CYLC2   10000 perm   2 sec   (5238 perm/sec)   p_kst 8.963000e-01   p_cons 3.821000e-01   p_joint 7.057000e-01

Outputting figure to mutsig2_images.part000000000046/CYLC2.8_1067_10000_0.8963_0.3821_0.7057.png
                gene_name: CYLC2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 6 percent done.
CYP19A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.041202e-02	ci left: 7.785383e-01	ci right 7.946944e-01	k: 7867	n:10000
Cons ci ratio: 4.721990e-02	ci left: 3.982459e-01	ci right 4.176078e-01	k: 4079	n:10000
KS ci ratio: 2.631022e-02	ci left: 6.802263e-01	ci right 6.984633e-01	k: 6894	n:10000
CYP19A1   10000 perm   3 sec   (3803 perm/sec)   p_kst 6.894000e-01   p_cons 4.079000e-01   p_joint 7.867000e-01

Outputting figure to mutsig2_images.part000000000046/CYP19A1.8_1548_10000_0.6894_0.4079_0.7867.png
                gene_name: CYP19A1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 8 percent done.
CYP4F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.534259e-02	ci left: 8.603917e-01	ci right 8.737937e-01	k: 8672	n:10000
Cons ci ratio: 1.577910e-02	ci left: 8.536564e-01	ci right 8.673329e-01	k: 8606	n:10000
KS ci ratio: 1.931253e-02	ci left: 7.967918e-01	ci right 8.124303e-01	k: 8047	n:10000
CYP4F2   10000 perm   2 sec   (5565 perm/sec)   p_kst 8.047000e-01   p_cons 8.606000e-01   p_joint 8.672000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4F2.8_1611_10000_0.8047_0.8606_0.8672.png
                gene_name: CYP4F2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 9 percent done.
CYP7B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.265846e-01	ci left: 8.193541e-02	ci right 9.310624e-02	k: 874	n:10000
Cons ci ratio: 1.546220e-02	ci left: 8.585543e-01	ci right 8.720322e-01	k: 8654	n:10000
KS ci ratio: 2.736895e-01	ci left: 1.734654e-02	ci right 2.293792e-02	k: 200	n:10000
CYP7B1   10000 perm   2 sec   (5616 perm/sec)   p_kst 2.000000e-02   p_cons 8.654000e-01   p_joint 8.740000e-02

Joint ci ratio: 1.189533e-01	ci left: 4.842873e-02	ci right 5.460248e-02	k: 1029	n:20000
Cons ci ratio: 1.075358e-02	ci left: 8.644483e-01	ci right 8.738441e-01	k: 17384	n:20000
KS ci ratio: 1.960353e-01	ci left: 1.767633e-02	ci right 2.156510e-02	k: 391	n:20000
CYP7B1   20000 perm   4 sec   (5060 perm/sec)   p_kst 1.955000e-02   p_cons 8.692000e-01   p_joint 5.145000e-02

Joint ci ratio: 1.137159e-01	ci left: 3.592946e-02	ci right 4.029391e-02	k: 1142	n:30000
Cons ci ratio: 8.645679e-03	ci left: 8.688418e-01	ci right 8.764192e-01	k: 26180	n:30000
KS ci ratio: 1.613273e-01	ci left: 1.774120e-02	ci right 2.088620e-02	k: 578	n:30000
CYP7B1   30000 perm   6 sec   (4739 perm/sec)   p_kst 1.926667e-02   p_cons 8.726667e-01   p_joint 3.806667e-02

Joint ci ratio: 9.745538e-02	ci left: 3.697735e-02	ci right 4.078997e-02	k: 1554	n:40000
Cons ci ratio: 7.469287e-03	ci left: 8.698995e-01	ci right 8.764462e-01	k: 34928	n:40000
KS ci ratio: 1.415959e-01	ci left: 1.746740e-02	ci right 2.015311e-02	k: 751	n:40000
CYP7B1   40000 perm   9 sec   (4586 perm/sec)   p_kst 1.877500e-02   p_cons 8.732000e-01   p_joint 3.885000e-02

Joint ci ratio: 8.818080e-02	ci left: 3.634099e-02	ci right 3.971292e-02	k: 1900	n:50000
Cons ci ratio: 6.672826e-03	ci left: 8.705142e-01	ci right 8.763623e-01	k: 43673	n:50000
KS ci ratio: 1.266475e-01	ci left: 1.760814e-02	ci right 2.000818e-02	k: 939	n:50000
CYP7B1   50000 perm   11 sec   (4394 perm/sec)   p_kst 1.878000e-02   p_cons 8.734600e-01   p_joint 3.800000e-02

Joint ci ratio: 7.907102e-02	ci left: 3.779193e-02	ci right 4.091950e-02	k: 2360	n:60000
Cons ci ratio: 6.087992e-03	ci left: 8.708979e-01	ci right 8.762326e-01	k: 52415	n:60000
KS ci ratio: 1.154567e-01	ci left: 1.776062e-02	ci right 1.995293e-02	k: 1130	n:60000
CYP7B1   60000 perm   14 sec   (4330 perm/sec)   p_kst 1.883333e-02   p_cons 8.735833e-01   p_joint 3.933333e-02

Joint ci ratio: 7.558689e-02	ci left: 3.559971e-02	ci right 3.841027e-02	k: 2589	n:70000
Cons ci ratio: 5.629736e-03	ci left: 8.713606e-01	ci right 8.762941e-01	k: 61169	n:70000
KS ci ratio: 1.077484e-01	ci left: 1.755635e-02	ci right 1.956956e-02	k: 1298	n:70000
CYP7B1   70000 perm   16 sec   (4258 perm/sec)   p_kst 1.854286e-02   p_cons 8.738429e-01   p_joint 3.698571e-02

Joint ci ratio: 7.405673e-02	ci left: 3.258297e-02	ci right 3.510098e-02	k: 2706	n:80000
Cons ci ratio: 5.552713e-03	ci left: 8.592759e-01	ci right 8.640729e-01	k: 68935	n:80000
KS ci ratio: 1.007402e-01	ci left: 1.763844e-02	ci right 1.952171e-02	k: 1485	n:80000
CYP7B1   80000 perm   19 sec   (4180 perm/sec)   p_kst 1.856250e-02   p_cons 8.616875e-01   p_joint 3.382500e-02

Joint ci ratio: 7.287889e-02	ci left: 3.000823e-02	ci right 3.228878e-02	k: 2802	n:90000
Cons ci ratio: 4.969647e-03	ci left: 8.714450e-01	ci right 8.757976e-01	k: 78627	n:90000
KS ci ratio: 9.425606e-02	ci left: 1.796607e-02	ci right 1.975403e-02	k: 1696	n:90000
CYP7B1   90000 perm   22 sec   (4110 perm/sec)   p_kst 1.884444e-02   p_cons 8.736333e-01   p_joint 3.113333e-02

Outputting figure to mutsig2_images.part000000000046/CYP7B1.8_1545_90000_0.018844_0.87363_0.031133.png
                gene_name: CYP7B1
               theta_stop: 0.094 
                    nperm: 90000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 11 percent done.
CYP1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.927474e-03	ci left: 9.349586e-01	ci right 9.443833e-01	k: 9398	n:10000
KS ci ratio: 1.076832e-02	ci left: 9.247196e-01	ci right 9.348283e-01	k: 9299	n:10000
CYP1A1   10000 perm   2 sec   (5549 perm/sec)   p_kst 9.299000e-01   p_cons 9.398000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYP1A1.7_1563_10000_0.9299_0.9398_1.png
                gene_name: CYP1A1
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
CYP2A13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.381504e-02	ci left: 7.215864e-01	ci right 7.390793e-01	k: 7304	n:10000
Cons ci ratio: 2.613224e-02	ci left: 6.831489e-01	ci right 7.013390e-01	k: 6923	n:10000
KS ci ratio: 4.606649e-02	ci left: 4.102013e-01	ci right 4.296454e-01	k: 4199	n:10000
CYP2A13   10000 perm   2 sec   (5303 perm/sec)   p_kst 4.199000e-01   p_cons 6.923000e-01   p_joint 7.304000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2A13.7_1521_10000_0.4199_0.6923_0.7304.png
                gene_name: CYP2A13
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 14 percent done.
CYP2C9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.488745e-02	ci left: 7.037201e-01	ci right 7.215559e-01	k: 7127	n:10000
KS ci ratio: 1.256392e-02	ci left: 9.010357e-01	ci right 9.125260e-01	k: 9069	n:10000
CYP2C9   10000 perm   2 sec   (5094 perm/sec)   p_kst 9.069000e-01   p_cons 7.127000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYP2C9.7_1509_10000_0.9069_0.7127_1.png
                gene_name: CYP2C9
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
CYP4F22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.889743e-02	ci left: 4.939506e-01	ci right 5.136472e-01	k: 5038	n:10000
Cons ci ratio: 5.290849e-03	ci left: 9.794135e-01	ci right 9.847004e-01	k: 9822	n:10000
KS ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
CYP4F22   10000 perm   2 sec   (5206 perm/sec)   p_kst 3.199000e-01   p_cons 9.822000e-01   p_joint 5.038000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4F22.7_1644_10000_0.3199_0.9822_0.5038.png
                gene_name: CYP4F22
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 17 percent done.
CXorf59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.125490e-02	ci left: 7.644585e-01	ci right 7.809823e-01	k: 7728	n:10000
Cons ci ratio: 4.144526e-02	ci left: 4.622748e-01	ci right 4.819415e-01	k: 4721	n:10000
KS ci ratio: 2.653156e-02	ci left: 6.765988e-01	ci right 6.948929e-01	k: 6858	n:10000
CXorf59   10000 perm   2 sec   (5732 perm/sec)   p_kst 6.858000e-01   p_cons 4.721000e-01   p_joint 7.728000e-01

Outputting figure to mutsig2_images.part000000000046/CXorf59.6_1549_10000_0.6858_0.4721_0.7728.png
                gene_name: CXorf59
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 18 percent done.
CYB5R4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.272134e-02	ci left: 5.795829e-01	ci right 5.989651e-01	k: 5893	n:10000
Cons ci ratio: 1.212799e-02	ci left: 9.069966e-01	ci right 9.181617e-01	k: 9127	n:10000
KS ci ratio: 4.497748e-02	ci left: 4.218634e-01	ci right 4.413764e-01	k: 4316	n:10000
CYB5R4   10000 perm   2 sec   (4628 perm/sec)   p_kst 4.316000e-01   p_cons 9.127000e-01   p_joint 5.893000e-01

Outputting figure to mutsig2_images.part000000000046/CYB5R4.6_1630_10000_0.4316_0.9127_0.5893.png
                gene_name: CYB5R4
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 20 percent done.
CYFIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.374855e-02	ci left: 7.226973e-01	ci right 7.401677e-01	k: 7315	n:10000
Cons ci ratio: 5.383424e-02	ci left: 3.370699e-01	ci right 3.558196e-01	k: 3464	n:10000
KS ci ratio: 4.190533e-02	ci left: 4.567830e-01	ci right 4.764365e-01	k: 4666	n:10000
CYFIP1   10000 perm   2 sec   (4579 perm/sec)   p_kst 4.666000e-01   p_cons 3.464000e-01   p_joint 7.315000e-01

Outputting figure to mutsig2_images.part000000000046/CYFIP1.6_4263_10000_0.4666_0.3464_0.7315.png
                gene_name: CYFIP1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 21 percent done.
CYP2A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.195533e-03	ci left: 9.540918e-01	ci right 9.620385e-01	k: 9582	n:10000
KS ci ratio: 7.540566e-03	ci left: 9.605805e-01	ci right 9.679458e-01	k: 9644	n:10000
CYP2A6   10000 perm   2 sec   (5709 perm/sec)   p_kst 9.644000e-01   p_cons 9.582000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYP2A6.6_1521_10000_0.9644_0.9582_1.png
                gene_name: CYP2A6
               theta_stop: 0.0082 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
CYP2E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.512887e-02	ci left: 8.636592e-01	ci right 8.769242e-01	k: 8704	n:10000
Cons ci ratio: 3.407791e-02	ci left: 5.597262e-01	ci right 5.792333e-01	k: 5695	n:10000
KS ci ratio: 2.828377e-02	ci left: 6.482049e-01	ci right 6.669033e-01	k: 6576	n:10000
CYP2E1   10000 perm   2 sec   (5340 perm/sec)   p_kst 6.576000e-01   p_cons 5.695000e-01   p_joint 8.704000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2E1.6_1518_10000_0.6576_0.5695_0.8704.png
                gene_name: CYP2E1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 24 percent done.
CYP3A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.382589e-01	ci left: 6.923436e-02	ci right 7.961519e-02	k: 743	n:10000
Cons ci ratio: 1.930388e-01	ci left: 3.576701e-02	ci right 4.350411e-02	k: 395	n:10000
KS ci ratio: 7.651358e-02	ci left: 1.998838e-01	ci right 2.158868e-01	k: 2078	n:10000
CYP3A7   10000 perm   2 sec   (5125 perm/sec)   p_kst 2.078000e-01   p_cons 3.950000e-02   p_joint 7.430000e-02

Joint ci ratio: 7.374025e-02	ci left: 1.192162e-01	ci right 1.283935e-01	k: 2475	n:20000
Cons ci ratio: 1.366820e-01	ci left: 3.679429e-02	ci right 4.224062e-02	k: 789	n:20000
KS ci ratio: 5.429354e-02	ci left: 2.011059e-01	ci right 2.123795e-01	k: 4134	n:20000
CYP3A7   20000 perm   4 sec   (4539 perm/sec)   p_kst 2.067000e-01   p_cons 3.945000e-02   p_joint 1.237500e-01

Joint ci ratio: 6.390833e-02	ci left: 1.078608e-01	ci right 1.150146e-01	k: 3342	n:30000
Cons ci ratio: 1.132021e-01	ci left: 3.625368e-02	ci right 4.063629e-02	k: 1152	n:30000
KS ci ratio: 4.426994e-02	ci left: 2.025925e-01	ci right 2.117976e-01	k: 6215	n:30000
CYP3A7   30000 perm   7 sec   (4436 perm/sec)   p_kst 2.071667e-01   p_cons 3.840000e-02   p_joint 1.114000e-01

Joint ci ratio: 6.080418e-02	ci left: 9.125580e-02	ci right 9.700327e-02	k: 3764	n:40000
Cons ci ratio: 9.858217e-02	ci left: 3.614741e-02	ci right 3.992003e-02	k: 1520	n:40000
KS ci ratio: 3.840327e-02	ci left: 2.026661e-01	ci right 2.106265e-01	k: 8265	n:40000
CYP3A7   40000 perm   9 sec   (4287 perm/sec)   p_kst 2.066250e-01   p_cons 3.800000e-02   p_joint 9.410000e-02

Outputting figure to mutsig2_images.part000000000046/CYP3A7.6_1564_40000_0.20663_0.038_0.0941.png
                gene_name: CYP3A7
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.097 

Current progress: 26 percent done.
CYP4F12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.645157e-02	ci left: 6.779086e-01	ci right 6.961823e-01	k: 6871	n:10000
Cons ci ratio: 2.355520e-02	ci left: 7.259294e-01	ci right 7.433338e-01	k: 7347	n:10000
KS ci ratio: 3.397380e-02	ci left: 5.612300e-01	ci right 5.807287e-01	k: 5710	n:10000
CYP4F12   10000 perm   2 sec   (5226 perm/sec)   p_kst 5.710000e-01   p_cons 7.347000e-01   p_joint 6.871000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4F12.6_1623_10000_0.571_0.7347_0.6871.png
                gene_name: CYP4F12
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 27 percent done.
CXorf58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.536657e-02	ci left: 3.245569e-01	ci right 3.431400e-01	k: 3338	n:10000
Cons ci ratio: 4.404582e-02	ci left: 4.321347e-01	ci right 4.516992e-01	k: 4419	n:10000
KS ci ratio: 7.951784e-02	ci left: 1.876681e-01	ci right 2.033097e-01	k: 1954	n:10000
CXorf58   10000 perm   2 sec   (4433 perm/sec)   p_kst 1.954000e-01   p_cons 4.419000e-01   p_joint 3.338000e-01

Outputting figure to mutsig2_images.part000000000046/CXorf58.5_1031_10000_0.1954_0.4419_0.3338.png
                gene_name: CXorf58
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 29 percent done.
CXorf66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.105166e-02	ci left: 6.047779e-01	ci right 6.239554e-01	k: 6144	n:10000
Cons ci ratio: 4.000184e-02	ci left: 4.799564e-01	ci right 4.996496e-01	k: 4898	n:10000
KS ci ratio: 4.149518e-02	ci left: 4.616756e-01	ci right 4.813410e-01	k: 4715	n:10000
CXorf66   10000 perm   2 sec   (4979 perm/sec)   p_kst 4.715000e-01   p_cons 4.898000e-01   p_joint 6.144000e-01

Outputting figure to mutsig2_images.part000000000046/CXorf66.5_1098_10000_0.4715_0.4898_0.6144.png
                gene_name: CXorf66
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 30 percent done.
CYFIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.392025e-02	ci left: 2.644834e-01	ci right 2.820489e-01	k: 2732	n:10000
KS ci ratio: 1.652095e-02	ci left: 8.420346e-01	ci right 8.561614e-01	k: 8492	n:10000
CYFIP2   10000 perm   2 sec   (4119 perm/sec)   p_kst 8.492000e-01   p_cons 2.732000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYFIP2.5_3882_10000_0.8492_0.2732_1.png
                gene_name: CYFIP2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
CYLD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.479894e-02	ci left: 3.291243e-01	ci right 3.477699e-01	k: 3384	n:10000
Cons ci ratio: 1.014946e-01	ci left: 1.231736e-01	ci right 1.364429e-01	k: 1297	n:10000
KS ci ratio: 2.542302e-02	ci left: 6.948436e-01	ci right 7.128375e-01	k: 7039	n:10000
CYLD   10000 perm   2 sec   (5152 perm/sec)   p_kst 7.039000e-01   p_cons 1.297000e-01   p_joint 3.384000e-01

Joint ci ratio: 2.970251e-02	ci left: 4.585175e-01	ci right 4.723926e-01	k: 9309	n:20000
Cons ci ratio: 7.197603e-02	ci left: 1.244821e-01	ci right 1.338260e-01	k: 2582	n:20000
KS ci ratio: 1.808080e-02	ci left: 6.951041e-01	ci right 7.078372e-01	k: 14030	n:20000
CYLD   20000 perm   5 sec   (4296 perm/sec)   p_kst 7.015000e-01   p_cons 1.291000e-01   p_joint 4.654500e-01

Outputting figure to mutsig2_images.part000000000046/CYLD.5_2939_20000_0.7015_0.1291_0.46545.png
                gene_name: CYLD
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 33 percent done.
CYP11B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.615064e-02	ci left: 6.828465e-01	ci right 7.010415e-01	k: 6920	n:10000
KS ci ratio: 1.395289e-02	ci left: 8.812461e-01	ci right 8.937272e-01	k: 8876	n:10000
CYP11B2   10000 perm   2 sec   (5134 perm/sec)   p_kst 8.876000e-01   p_cons 6.920000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYP11B2.5_1548_10000_0.8876_0.692_1.png
                gene_name: CYP11B2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
CYP2A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.539235e-02	ci left: 4.173773e-01	ci right 4.368652e-01	k: 4271	n:10000
Cons ci ratio: 3.078365e-02	ci left: 6.088960e-01	ci right 6.280350e-01	k: 6185	n:10000
KS ci ratio: 7.507969e-02	ci left: 2.060944e-01	ci right 2.222724e-01	k: 2141	n:10000
CYP2A7   10000 perm   2 sec   (4900 perm/sec)   p_kst 2.141000e-01   p_cons 6.185000e-01   p_joint 4.271000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2A7.5_1531_10000_0.2141_0.6185_0.4271.png
                gene_name: CYP2A7
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 36 percent done.
CXorf57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.182909e-02	ci left: 7.548431e-01	ci right 7.716033e-01	k: 7633	n:10000
Cons ci ratio: 3.581985e-02	ci left: 5.350779e-01	ci right 5.546960e-01	k: 5449	n:10000
KS ci ratio: 3.111722e-02	ci left: 6.037736e-01	ci right 6.229603e-01	k: 6134	n:10000
CXorf57   10000 perm   2 sec   (5120 perm/sec)   p_kst 6.134000e-01   p_cons 5.449000e-01   p_joint 7.633000e-01

Outputting figure to mutsig2_images.part000000000046/CXorf57.4_2624_10000_0.6134_0.5449_0.7633.png
                gene_name: CXorf57
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 38 percent done.
CYP11A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.040660e-02	ci left: 6.147227e-01	ci right 6.338048e-01	k: 6243	n:10000
Cons ci ratio: 2.080668e-02	ci left: 7.719526e-01	ci right 7.882839e-01	k: 7802	n:10000
KS ci ratio: 3.892855e-02	ci left: 4.935506e-01	ci right 5.132474e-01	k: 5034	n:10000
CYP11A1   10000 perm   2 sec   (4446 perm/sec)   p_kst 5.034000e-01   p_cons 7.802000e-01   p_joint 6.243000e-01

Outputting figure to mutsig2_images.part000000000046/CYP11A1.4_1602_10000_0.5034_0.7802_0.6243.png
                gene_name: CYP11A1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 39 percent done.
CYP27C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.508193e-02	ci left: 8.643742e-01	ci right 8.776089e-01	k: 8711	n:10000
Cons ci ratio: 3.355961e-02	ci left: 5.672458e-01	ci right 5.867093e-01	k: 5770	n:10000
KS ci ratio: 7.363547e-03	ci left: 9.622595e-01	ci right 9.694658e-01	k: 9660	n:10000
CYP27C1   10000 perm   3 sec   (3846 perm/sec)   p_kst 9.660000e-01   p_cons 5.770000e-01   p_joint 8.711000e-01

Outputting figure to mutsig2_images.part000000000046/CYP27C1.4_1147_10000_0.966_0.577_0.8711.png
                gene_name: CYP27C1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 41 percent done.
CYP2C19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.626226e-02	ci left: 8.461108e-01	ci right 8.600828e-01	k: 8532	n:10000
KS ci ratio: 2.313860e-02	ci left: 7.329006e-01	ci right 7.501585e-01	k: 7416	n:10000
CYP2C19   10000 perm   2 sec   (5255 perm/sec)   p_kst 7.416000e-01   p_cons 8.532000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYP2C19.4_1509_10000_0.7416_0.8532_1.png
                gene_name: CYP2C19
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
CYP2C8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.960300e-02	ci left: 2.323474e-01	ci right 2.492038e-01	k: 2407	n:10000
Cons ci ratio: 1.589924e-01	ci left: 5.272798e-02	ci right 6.193202e-02	k: 572	n:10000
KS ci ratio: 1.023059e-02	ci left: 9.313350e-01	ci right 9.410090e-01	k: 9363	n:10000
CYP2C8   10000 perm   2 sec   (6065 perm/sec)   p_kst 9.363000e-01   p_cons 5.720000e-02   p_joint 2.407000e-01

Joint ci ratio: 4.210498e-02	ci left: 2.959393e-01	ci right 3.087182e-01	k: 6046	n:20000
Cons ci ratio: 1.120129e-01	ci left: 5.445922e-02	ci right 6.097011e-02	k: 1153	n:20000
KS ci ratio: 7.219894e-03	ci left: 9.330314e-01	ci right 9.398410e-01	k: 18730	n:20000
CYP2C8   20000 perm   4 sec   (5205 perm/sec)   p_kst 9.365000e-01   p_cons 5.765000e-02   p_joint 3.023000e-01

Joint ci ratio: 4.142547e-02	ci left: 2.250821e-01	ci right 2.346369e-01	k: 6895	n:30000
Cons ci ratio: 9.016690e-02	ci left: 5.658822e-02	ci right 6.196420e-02	k: 1777	n:30000
KS ci ratio: 5.935618e-03	ci left: 9.328313e-01	ci right 9.384173e-01	k: 28070	n:30000
CYP2C8   30000 perm   6 sec   (4956 perm/sec)   p_kst 9.356667e-01   p_cons 5.923333e-02   p_joint 2.298333e-01

Outputting figure to mutsig2_images.part000000000046/CYP2C8.4_1509_30000_0.93567_0.059233_0.22983.png
                gene_name: CYP2C8
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.23 

Current progress: 44 percent done.
CYP2F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.313059e-02	ci left: 1.742843e-01	ci right 1.895015e-01	k: 1818	n:10000
Cons ci ratio: 2.443237e-02	ci left: 7.112884e-01	ci right 7.289832e-01	k: 7202	n:10000
KS ci ratio: 1.117840e-01	ci left: 1.033465e-01	ci right 1.156820e-01	k: 1094	n:10000
CYP2F1   10000 perm   2 sec   (5547 perm/sec)   p_kst 1.094000e-01   p_cons 7.202000e-01   p_joint 1.818000e-01

Joint ci ratio: 5.364009e-02	ci left: 2.050656e-01	ci right 2.164187e-01	k: 4214	n:20000
Cons ci ratio: 1.680372e-02	ci left: 7.250478e-01	ci right 7.373849e-01	k: 14625	n:20000
KS ci ratio: 7.928886e-02	ci left: 1.045657e-01	ci right 1.132484e-01	k: 2177	n:20000
CYP2F1   20000 perm   4 sec   (4960 perm/sec)   p_kst 1.088500e-01   p_cons 7.312500e-01   p_joint 2.107000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2F1.4_1512_20000_0.10885_0.73125_0.2107.png
                gene_name: CYP2F1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 45 percent done.
CYP2R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.440648e-02	ci left: 2.615144e-01	ci right 2.790196e-01	k: 2702	n:10000
Cons ci ratio: 8.481661e-02	ci left: 1.684829e-01	ci right 1.835063e-01	k: 1759	n:10000
KS ci ratio: 7.314920e-02	ci left: 2.148731e-01	ci right 2.312886e-01	k: 2230	n:10000
CYP2R1   10000 perm   2 sec   (5097 perm/sec)   p_kst 2.230000e-01   p_cons 1.759000e-01   p_joint 2.702000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2R1.4_1526_10000_0.223_0.1759_0.2702.png
                gene_name: CYP2R1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 47 percent done.
CYP4F8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.332111e-02	ci left: 4.403148e-01	ci right 4.599142e-01	k: 4501	n:10000
Cons ci ratio: 4.489509e-02	ci left: 4.227607e-01	ci right 4.422786e-01	k: 4325	n:10000
KS ci ratio: 6.078901e-02	ci left: 2.846853e-01	ci right 3.026351e-01	k: 2936	n:10000
CYP4F8   10000 perm   2 sec   (5508 perm/sec)   p_kst 2.936000e-01   p_cons 4.325000e-01   p_joint 4.501000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4F8.4_1610_10000_0.2936_0.4325_0.4501.png
                gene_name: CYP4F8
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 48 percent done.
CYP7A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.092922e-03	ci left: 9.551367e-01	ci right 9.629931e-01	k: 9592	n:10000
Cons ci ratio: 7.827576e-02	ci left: 1.925924e-01	ci right 2.083825e-01	k: 2004	n:10000
KS ci ratio: 2.547181e-02	ci left: 6.940369e-01	ci right 7.120447e-01	k: 7031	n:10000
CYP7A1   10000 perm   2 sec   (5781 perm/sec)   p_kst 7.031000e-01   p_cons 2.004000e-01   p_joint 9.592000e-01

Outputting figure to mutsig2_images.part000000000046/CYP7A1.4_1539_10000_0.7031_0.2004_0.9592.png
                gene_name: CYP7A1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 50 percent done.
CYSLTR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.002574e-01	ci left: 3.319542e-02	ci right 4.067746e-02	k: 368	n:10000
Cons ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
KS ci ratio: 5.633897e-02	ci left: 3.169137e-01	ci right 3.353876e-01	k: 3261	n:10000
CYSLTR2   10000 perm   2 sec   (6258 perm/sec)   p_kst 3.261000e-01   p_cons 7.700000e-03   p_joint 3.680000e-02

Joint ci ratio: 1.500435e-01	ci left: 3.051917e-02	ci right 3.551780e-02	k: 659	n:20000
Cons ci ratio: 3.277811e-01	ci left: 5.937561e-03	ci right 8.309133e-03	k: 141	n:20000
KS ci ratio: 4.011115e-02	ci left: 3.166695e-01	ci right 3.296819e-01	k: 6463	n:20000
CYSLTR2   20000 perm   4 sec   (5524 perm/sec)   p_kst 3.231500e-01   p_cons 7.050000e-03   p_joint 3.295000e-02

Joint ci ratio: 1.501990e-01	ci left: 2.053041e-02	ci right 2.389633e-02	k: 665	n:30000
Cons ci ratio: 2.865312e-01	ci left: 5.312224e-03	ci right 7.118745e-03	k: 185	n:30000
KS ci ratio: 3.265852e-02	ci left: 3.191030e-01	ci right 3.297310e-01	k: 9732	n:30000
CYSLTR2   30000 perm   6 sec   (5268 perm/sec)   p_kst 3.244000e-01   p_cons 6.166667e-03   p_joint 2.216667e-02

Joint ci ratio: 1.186221e-01	ci left: 2.499648e-02	ci right 2.817275e-02	k: 1062	n:40000
Cons ci ratio: 2.486493e-01	ci left: 5.407373e-03	ci right 6.965625e-03	k: 246	n:40000
KS ci ratio: 2.824820e-02	ci left: 3.203605e-01	ci right 3.295649e-01	k: 12998	n:40000
CYSLTR2   40000 perm   8 sec   (5050 perm/sec)   p_kst 3.249500e-01   p_cons 6.150000e-03   p_joint 2.655000e-02

Joint ci ratio: 9.954651e-02	ci left: 2.858065e-02	ci right 3.159424e-02	k: 1503	n:50000
Cons ci ratio: 2.194679e-01	ci left: 5.644169e-03	ci right 7.054066e-03	k: 316	n:50000
KS ci ratio: 2.525992e-02	ci left: 3.209546e-01	ci right 3.291857e-01	k: 16253	n:50000
CYSLTR2   50000 perm   10 sec   (4920 perm/sec)   p_kst 3.250600e-01   p_cons 6.320000e-03   p_joint 3.006000e-02

Joint ci ratio: 1.076632e-01	ci left: 2.045164e-02	ci right 2.279495e-02	k: 1296	n:60000
Cons ci ratio: 1.996607e-01	ci left: 5.745887e-03	ci right 7.035891e-03	k: 382	n:60000
KS ci ratio: 2.301515e-02	ci left: 3.221498e-01	ci right 3.296671e-01	k: 19554	n:60000
CYSLTR2   60000 perm   13 sec   (4770 perm/sec)   p_kst 3.259000e-01   p_cons 6.366667e-03   p_joint 2.160000e-02

Joint ci ratio: 9.908171e-02	ci left: 2.078668e-02	ci right 2.296749e-02	k: 1530	n:70000
Cons ci ratio: 1.858645e-01	ci left: 5.727263e-03	ci right 6.914219e-03	k: 441	n:70000
KS ci ratio: 2.129416e-02	ci left: 3.227129e-01	ci right 3.296730e-01	k: 22833	n:70000
CYSLTR2   70000 perm   15 sec   (4636 perm/sec)   p_kst 3.261857e-01   p_cons 6.300000e-03   p_joint 2.185714e-02

Joint ci ratio: 9.437023e-02	ci left: 2.011525e-02	ci right 2.211969e-02	k: 1688	n:80000
Cons ci ratio: 1.731962e-01	ci left: 5.811277e-03	ci right 6.924976e-03	k: 508	n:80000
KS ci ratio: 1.995176e-02	ci left: 3.222158e-01	ci right 3.287218e-01	k: 26037	n:80000
CYSLTR2   80000 perm   18 sec   (4535 perm/sec)   p_kst 3.254625e-01   p_cons 6.350000e-03   p_joint 2.110000e-02

Joint ci ratio: 9.024593e-02	ci left: 1.960588e-02	ci right 2.146965e-02	k: 1847	n:90000
Cons ci ratio: 1.632373e-01	ci left: 5.846780e-03	ci right 6.896529e-03	k: 572	n:90000
KS ci ratio: 1.887024e-02	ci left: 3.210202e-01	ci right 3.271467e-01	k: 29167	n:90000
CYSLTR2   90000 perm   20 sec   (4457 perm/sec)   p_kst 3.240778e-01   p_cons 6.355556e-03   p_joint 2.052222e-02

Joint ci ratio: 8.350774e-02	ci left: 2.065890e-02	ci right 2.246900e-02	k: 2155	n:100000
Cons ci ratio: 1.534916e-01	ci left: 5.982433e-03	ci right 6.986515e-03	k: 647	n:100000
KS ci ratio: 1.789898e-02	ci left: 3.212491e-01	ci right 3.270611e-01	k: 32415	n:100000
CYSLTR2   100000 perm   23 sec   (4382 perm/sec)   p_kst 3.241500e-01   p_cons 6.470000e-03   p_joint 2.155000e-02

Joint ci ratio: 7.721965e-02	ci left: 2.200624e-02	ci right 2.378268e-02	k: 2517	n:110000
Cons ci ratio: 1.467428e-01	ci left: 5.972295e-03	ci right 6.926735e-03	k: 708	n:110000
KS ci ratio: 1.655911e-02	ci left: 3.347054e-01	ci right 3.403032e-01	k: 37125	n:110000
CYSLTR2   110000 perm   26 sec   (4312 perm/sec)   p_kst 3.375000e-01   p_cons 6.436364e-03   p_joint 2.288182e-02

Joint ci ratio: 7.761044e-02	ci left: 2.000814e-02	ci right 2.163180e-02	k: 2497	n:120000
Cons ci ratio: 1.414611e-01	ci left: 5.908367e-03	ci right 6.815737e-03	k: 762	n:120000
KS ci ratio: 1.584649e-02	ci left: 3.350406e-01	ci right 3.404005e-01	k: 40526	n:120000
CYSLTR2   120000 perm   29 sec   (4210 perm/sec)   p_kst 3.377167e-01   p_cons 6.350000e-03   p_joint 2.080833e-02

Joint ci ratio: 6.733513e-02	ci left: 2.455148e-02	ci right 2.626978e-02	k: 3302	n:130000
Cons ci ratio: 1.361257e-01	ci left: 5.906817e-03	ci right 6.776962e-03	k: 823	n:130000
KS ci ratio: 1.520291e-02	ci left: 3.357893e-01	ci right 3.409410e-01	k: 43987	n:130000
CYSLTR2   130000 perm   32 sec   (4124 perm/sec)   p_kst 3.383615e-01   p_cons 6.330769e-03   p_joint 2.540000e-02

Joint ci ratio: 6.507445e-02	ci left: 2.444151e-02	ci right 2.609252e-02	k: 3536	n:140000
Cons ci ratio: 1.321810e-01	ci left: 5.830043e-03	ci right 6.662035e-03	k: 873	n:140000
KS ci ratio: 1.463885e-02	ci left: 3.362207e-01	ci right 3.411860e-01	k: 47418	n:140000
CYSLTR2   140000 perm   35 sec   (4044 perm/sec)   p_kst 3.387000e-01   p_cons 6.235714e-03   p_joint 2.525714e-02

Joint ci ratio: 6.709980e-02	ci left: 2.149966e-02	ci right 2.299889e-02	k: 3336	n:150000
Cons ci ratio: 1.280731e-01	ci left: 5.809000e-03	ci right 6.610267e-03	k: 930	n:150000
KS ci ratio: 1.413743e-02	ci left: 3.364645e-01	ci right 3.412617e-01	k: 50829	n:150000
CYSLTR2   150000 perm   38 sec   (3989 perm/sec)   p_kst 3.388600e-01   p_cons 6.200000e-03   p_joint 2.224000e-02

Joint ci ratio: 6.055944e-02	ci left: 2.474539e-02	ci right 2.629687e-02	k: 4082	n:160000
Cons ci ratio: 1.233250e-01	ci left: 5.887859e-03	ci right 6.667695e-03	k: 1003	n:160000
KS ci ratio: 1.369972e-02	ci left: 3.361749e-01	ci right 3.408184e-01	k: 54159	n:160000
CYSLTR2   160000 perm   41 sec   (3925 perm/sec)   p_kst 3.384937e-01   p_cons 6.268750e-03   p_joint 2.551250e-02

Joint ci ratio: 5.764399e-02	ci left: 2.571843e-02	ci right 2.725071e-02	k: 4501	n:170000
Cons ci ratio: 1.192357e-01	ci left: 5.940798e-03	ci right 6.699715e-03	k: 1073	n:170000
KS ci ratio: 1.329941e-02	ci left: 3.359509e-01	ci right 3.404546e-01	k: 57494	n:170000
CYSLTR2   170000 perm   44 sec   (3864 perm/sec)   p_kst 3.382000e-01   p_cons 6.311765e-03   p_joint 2.647647e-02

Joint ci ratio: 5.899771e-02	ci left: 2.323215e-02	ci right 2.464990e-02	k: 4308	n:180000
Cons ci ratio: 1.159367e-01	ci left: 5.945068e-03	ci right 6.682079e-03	k: 1135	n:180000
KS ci ratio: 1.294045e-02	ci left: 3.354707e-01	ci right 3.398456e-01	k: 60778	n:180000
CYSLTR2   180000 perm   47 sec   (3805 perm/sec)   p_kst 3.376556e-01   p_cons 6.305556e-03   p_joint 2.393333e-02

Joint ci ratio: 5.970555e-02	ci left: 2.152144e-02	ci right 2.285109e-02	k: 4214	n:190000
Cons ci ratio: 1.126137e-01	ci left: 5.979841e-03	ci right 6.698504e-03	k: 1203	n:190000
KS ci ratio: 1.258948e-02	ci left: 3.357363e-01	ci right 3.399950e-01	k: 64194	n:190000
CYSLTR2   190000 perm   51 sec   (3752 perm/sec)   p_kst 3.378632e-01   p_cons 6.331579e-03   p_joint 2.217895e-02

Joint ci ratio: 5.499404e-02	ci left: 2.409323e-02	ci right 2.546059e-02	k: 4954	n:200000
Cons ci ratio: 1.100848e-01	ci left: 5.953046e-03	ci right 6.651379e-03	k: 1259	n:200000
KS ci ratio: 1.227573e-02	ci left: 3.356072e-01	ci right 3.397575e-01	k: 67536	n:200000
CYSLTR2   200000 perm   54 sec   (3679 perm/sec)   p_kst 3.376800e-01   p_cons 6.295000e-03   p_joint 2.477000e-02

Joint ci ratio: 5.317170e-02	ci left: 2.455734e-02	ci right 2.590343e-02	k: 5297	n:210000
Cons ci ratio: 1.076367e-01	ci left: 5.938236e-03	ci right 6.618358e-03	k: 1317	n:210000
KS ci ratio: 1.197566e-02	ci left: 3.358151e-01	ci right 3.398656e-01	k: 70946	n:210000
CYSLTR2   210000 perm   59 sec   (3571 perm/sec)   p_kst 3.378381e-01   p_cons 6.271429e-03   p_joint 2.522381e-02

Joint ci ratio: 4.729029e-02	ci left: 2.956968e-02	ci right 3.100637e-02	k: 6662	n:220000
Cons ci ratio: 1.048097e-01	ci left: 5.986902e-03	ci right 6.653479e-03	k: 1389	n:220000
KS ci ratio: 1.169467e-02	ci left: 3.360777e-01	ci right 3.400356e-01	k: 74372	n:220000
CYSLTR2   220000 perm   62 sec   (3526 perm/sec)   p_kst 3.380545e-01   p_cons 6.313636e-03   p_joint 3.028182e-02

Joint ci ratio: 4.614458e-02	ci left: 2.971930e-02	ci right 3.112735e-02	k: 6996	n:230000
Cons ci ratio: 1.025123e-01	ci left: 5.993414e-03	ci right 6.645208e-03	k: 1452	n:230000
KS ci ratio: 1.143479e-02	ci left: 3.362317e-01	ci right 3.401028e-01	k: 77778	n:230000
CYSLTR2   230000 perm   66 sec   (3488 perm/sec)   p_kst 3.381652e-01   p_cons 6.313043e-03   p_joint 3.041739e-02

Joint ci ratio: 4.445046e-02	ci left: 3.068938e-02	ci right 3.208864e-02	k: 7532	n:240000
Cons ci ratio: 9.989660e-02	ci left: 6.056411e-03	ci right 6.697264e-03	k: 1529	n:240000
KS ci ratio: 1.119036e-02	ci left: 3.364195e-01	ci right 3.402094e-01	k: 81195	n:240000
CYSLTR2   240000 perm   71 sec   (3404 perm/sec)   p_kst 3.383125e-01   p_cons 6.370833e-03   p_joint 3.138333e-02

Outputting figure to mutsig2_images.part000000000046/CYSLTR2.4_1045_240000_0.33831_0.0063708_0.031383.png
                gene_name: CYSLTR2
               theta_stop: 0.100 
                    nperm: 240000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.0064 
      ci_cons_bounds_left: 0.0061 
     ci_cons_bounds_right: 0.0067 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.032 

Current progress: 52 percent done.
CYB5R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
Cons ci ratio: 5.882622e-02	ci left: 2.983636e-01	ci right 3.165487e-01	k: 3074	n:10000
KS ci ratio: 2.994177e-02	ci left: 6.219580e-01	ci right 6.409654e-01	k: 6315	n:10000
CYB5R1   10000 perm   2 sec   (6228 perm/sec)   p_kst 6.315000e-01   p_cons 3.074000e-01   p_joint 5.464000e-01

Outputting figure to mutsig2_images.part000000000046/CYB5R1.3_954_10000_0.6315_0.3074_0.5464.png
                gene_name: CYB5R1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 53 percent done.
CYBRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.329855e-02	ci left: 1.736942e-01	ci right 1.888919e-01	k: 1812	n:10000
Cons ci ratio: 8.984913e-02	ci left: 1.526681e-01	ci right 1.671306e-01	k: 1598	n:10000
KS ci ratio: 6.437385e-02	ci left: 2.617124e-01	ci right 2.792215e-01	k: 2704	n:10000
CYBRD1   10000 perm   2 sec   (4707 perm/sec)   p_kst 2.704000e-01   p_cons 1.598000e-01   p_joint 1.812000e-01

Outputting figure to mutsig2_images.part000000000046/CYBRD1.3_877_10000_0.2704_0.1598_0.1812.png
                gene_name: CYBRD1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 55 percent done.
CYP1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.710561e-02	ci left: 6.672307e-01	ci right 6.856665e-01	k: 6765	n:10000
KS ci ratio: 1.428612e-02	ci left: 8.763339e-01	ci right 8.890423e-01	k: 8828	n:10000
CYP1A2   10000 perm   2 sec   (6123 perm/sec)   p_kst 8.828000e-01   p_cons 6.765000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYP1A2.3_1575_10000_0.8828_0.6765_1.png
                gene_name: CYP1A2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
CYP1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.312042e-02	ci left: 4.426097e-01	ci right 4.622180e-01	k: 4524	n:10000
Cons ci ratio: 4.550381e-02	ci left: 4.161812e-01	ci right 4.356620e-01	k: 4259	n:10000
KS ci ratio: 5.314023e-02	ci left: 3.429316e-01	ci right 3.617544e-01	k: 3523	n:10000
CYP1B1   10000 perm   2 sec   (6167 perm/sec)   p_kst 3.523000e-01   p_cons 4.259000e-01   p_joint 4.524000e-01

Outputting figure to mutsig2_images.part000000000046/CYP1B1.3_1640_10000_0.3523_0.4259_0.4524.png
                gene_name: CYP1B1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 58 percent done.
CYP24A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.795959e-02	ci left: 5.061517e-01	ci right 5.258389e-01	k: 5160	n:10000
Cons ci ratio: 3.669516e-02	ci left: 5.230630e-01	ci right 5.427178e-01	k: 5329	n:10000
KS ci ratio: 6.292156e-02	ci left: 2.707198e-01	ci right 2.884088e-01	k: 2795	n:10000
CYP24A1   10000 perm   2 sec   (6234 perm/sec)   p_kst 2.795000e-01   p_cons 5.329000e-01   p_joint 5.160000e-01

Outputting figure to mutsig2_images.part000000000046/CYP24A1.3_1589_10000_0.2795_0.5329_0.516.png
                gene_name: CYP24A1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 59 percent done.
CYP26A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.876542e-02	ci left: 4.956504e-01	ci right 5.153464e-01	k: 5055	n:10000
Cons ci ratio: 3.499009e-02	ci left: 5.466977e-01	ci right 5.662694e-01	k: 5565	n:10000
KS ci ratio: 4.412626e-02	ci left: 4.312370e-01	ci right 4.507974e-01	k: 4410	n:10000
CYP26A1   10000 perm   2 sec   (6563 perm/sec)   p_kst 4.410000e-01   p_cons 5.565000e-01   p_joint 5.055000e-01

Outputting figure to mutsig2_images.part000000000046/CYP26A1.3_1522_10000_0.441_0.5565_0.5055.png
                gene_name: CYP26A1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 61 percent done.
CYP27A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.348876e-02	ci left: 7.270405e-01	ci right 7.444219e-01	k: 7358	n:10000
KS ci ratio: 2.191967e-02	ci left: 7.533254e-01	ci right 7.701219e-01	k: 7618	n:10000
CYP27A1   10000 perm   2 sec   (5681 perm/sec)   p_kst 7.618000e-01   p_cons 7.358000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYP27A1.3_1632_10000_0.7618_0.7358_1.png
                gene_name: CYP27A1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
CYP27B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
KS ci ratio: 5.092200e-02	ci left: 3.625152e-01	ci right 3.815594e-01	k: 3720	n:10000
CYP27B1   10000 perm   2 sec   (5229 perm/sec)   p_kst 3.720000e-01   p_cons 5.000000e-04   p_joint 0

Joint ci ratio: 4.780895e-01	ci left: 2.553111e-03	ci right 4.196522e-03	k: 66	n:20000
Cons ci ratio: 1.385617e+00	ci left: 1.407294e-04	ci right 7.210000e-04	k: 7	n:20000
KS ci ratio: 3.620054e-02	ci left: 3.628548e-01	ci right 3.762831e-01	k: 7391	n:20000
CYP27B1   20000 perm   5 sec   (4339 perm/sec)   p_kst 3.695500e-01   p_cons 3.500000e-04   p_joint 3.300000e-03

Joint ci ratio: 4.520690e-01	ci left: 1.937345e-03	ci right 3.095698e-03	k: 74	n:30000
Cons ci ratio: 1.181688e+00	ci left: 1.598575e-04	ci right 6.129261e-04	k: 10	n:30000
KS ci ratio: 2.943323e-02	ci left: 3.660613e-01	ci right 3.770302e-01	k: 11146	n:30000
CYP27B1   30000 perm   7 sec   (4391 perm/sec)   p_kst 3.715333e-01   p_cons 3.333333e-04   p_joint 2.466667e-03

Joint ci ratio: 5.776328e-01	ci left: 8.206974e-04	ci right 1.505052e-03	k: 45	n:40000
Cons ci ratio: 1.131423e+00	ci left: 1.372867e-04	ci right 4.919976e-04	k: 11	n:40000
KS ci ratio: 2.541050e-02	ci left: 3.682576e-01	ci right 3.777608e-01	k: 14920	n:40000
CYP27B1   40000 perm   9 sec   (4278 perm/sec)   p_kst 3.730000e-01   p_cons 2.750000e-04   p_joint 1.125000e-03

Joint ci ratio: 4.821953e-01	ci left: 1.003451e-03	ci right 1.656661e-03	k: 65	n:50000
Cons ci ratio: 1.047507e+00	ci left: 1.384461e-04	ci right 4.445669e-04	k: 13	n:50000
KS ci ratio: 2.288142e-02	ci left: 3.656261e-01	ci right 3.741090e-01	k: 18493	n:50000
CYP27B1   50000 perm   12 sec   (4233 perm/sec)   p_kst 3.698600e-01   p_cons 2.600000e-04   p_joint 1.300000e-03

Joint ci ratio: 4.435603e-01	ci left: 1.012915e-03	ci right 1.603689e-03	k: 77	n:60000
Cons ci ratio: 8.552573e-01	ci left: 2.036202e-04	ci right 5.147596e-04	k: 20	n:60000
KS ci ratio: 2.086226e-02	ci left: 3.665672e-01	ci right 3.743120e-01	k: 22226	n:60000
CYP27B1   60000 perm   14 sec   (4230 perm/sec)   p_kst 3.704333e-01   p_cons 3.333333e-04   p_joint 1.283333e-03

Joint ci ratio: 4.554466e-01	ci left: 8.175199e-04	ci right 1.311060e-03	k: 73	n:70000
Cons ci ratio: 7.542535e-01	ci left: 2.426434e-04	ci right 5.441819e-04	k: 26	n:70000
KS ci ratio: 1.930908e-02	ci left: 3.669920e-01	ci right 3.741616e-01	k: 25940	n:70000
CYP27B1   70000 perm   17 sec   (4158 perm/sec)   p_kst 3.705714e-01   p_cons 3.714286e-04   p_joint 1.042857e-03

Joint ci ratio: 4.860156e-01	ci left: 6.161503e-04	ci right 1.021469e-03	k: 64	n:80000
Cons ci ratio: 7.039120e-01	ci left: 2.530248e-04	ci right 5.352929e-04	k: 30	n:80000
KS ci ratio: 1.803823e-02	ci left: 3.678382e-01	ci right 3.745462e-01	k: 29695	n:80000
CYP27B1   80000 perm   19 sec   (4121 perm/sec)   p_kst 3.711875e-01   p_cons 3.750000e-04   p_joint 8.000000e-04

Joint ci ratio: 4.787233e-01	ci left: 5.672039e-04	ci right 9.328867e-04	k: 66	n:90000
Cons ci ratio: 6.443080e-01	ci left: 2.801703e-04	ci right 5.537260e-04	k: 36	n:90000
KS ci ratio: 1.698396e-02	ci left: 3.686523e-01	ci right 3.749782e-01	k: 33463	n:90000
CYP27B1   90000 perm   22 sec   (4023 perm/sec)   p_kst 3.718111e-01   p_cons 4.000000e-04   p_joint 7.333333e-04

Joint ci ratio: 3.449124e-01	ci left: 1.067981e-03	ci right 1.521740e-03	k: 128	n:100000
Cons ci ratio: 6.196794e-01	ci left: 2.773424e-04	ci right 5.331047e-04	k: 39	n:100000
KS ci ratio: 1.613733e-02	ci left: 3.680946e-01	ci right 3.740929e-01	k: 37109	n:100000
CYP27B1   100000 perm   25 sec   (3990 perm/sec)   p_kst 3.710900e-01   p_cons 3.900000e-04   p_joint 1.280000e-03

Joint ci ratio: 3.264513e-01	ci left: 1.095773e-03	ci right 1.531204e-03	k: 143	n:110000
Cons ci ratio: 5.908413e-01	ci left: 2.829168e-04	ci right 5.265163e-04	k: 43	n:110000
KS ci ratio: 1.538275e-02	ci left: 3.683438e-01	ci right 3.740629e-01	k: 40832	n:110000
CYP27B1   110000 perm   28 sec   (3943 perm/sec)   p_kst 3.712000e-01   p_cons 3.909091e-04   p_joint 1.300000e-03

Joint ci ratio: 3.146573e-01	ci left: 1.088752e-03	ci right 1.502621e-03	k: 154	n:120000
Cons ci ratio: 5.598833e-01	ci left: 2.949427e-04	ci right 5.303074e-04	k: 48	n:120000
KS ci ratio: 1.471947e-02	ci left: 3.687317e-01	ci right 3.742078e-01	k: 44576	n:120000
CYP27B1   120000 perm   31 sec   (3906 perm/sec)   p_kst 3.714667e-01   p_cons 4.000000e-04   p_joint 1.283333e-03

Joint ci ratio: 3.022379e-01	ci left: 1.097266e-03	ci right 1.494747e-03	k: 167	n:130000
Cons ci ratio: 5.333316e-01	ci left: 3.054040e-04	ci right 5.332381e-04	k: 53	n:130000
KS ci ratio: 1.413869e-02	ci left: 3.689492e-01	ci right 3.742104e-01	k: 48305	n:130000
CYP27B1   130000 perm   34 sec   (3854 perm/sec)   p_kst 3.715769e-01   p_cons 4.076923e-04   p_joint 1.284615e-03

Joint ci ratio: 2.517684e-01	ci left: 1.511090e-03	ci right 1.952815e-03	k: 241	n:140000
Cons ci ratio: 5.102312e-01	ci left: 3.145991e-04	ci right 5.355279e-04	k: 58	n:140000
KS ci ratio: 1.361456e-02	ci left: 3.693817e-01	ci right 3.744522e-01	k: 52068	n:140000
CYP27B1   140000 perm   37 sec   (3812 perm/sec)   p_kst 3.719143e-01   p_cons 4.142857e-04   p_joint 1.721429e-03

Joint ci ratio: 2.560576e-01	ci left: 1.360397e-03	ci right 1.765927e-03	k: 233	n:150000
Cons ci ratio: 4.977359e-01	ci left: 3.110816e-04	ci right 5.223501e-04	k: 61	n:150000
KS ci ratio: 1.315164e-02	ci left: 3.695132e-01	ci right 3.744117e-01	k: 55794	n:150000
CYP27B1   150000 perm   40 sec   (3731 perm/sec)   p_kst 3.719600e-01   p_cons 4.066667e-04   p_joint 1.553333e-03

Joint ci ratio: 2.487265e-01	ci left: 1.357338e-03	ci right 1.748580e-03	k: 247	n:160000
Cons ci ratio: 4.937748e-01	ci left: 2.971065e-04	ci right 4.967304e-04	k: 62	n:160000
KS ci ratio: 1.273363e-02	ci left: 3.696059e-01	ci right 3.743487e-01	k: 59516	n:160000
CYP27B1   160000 perm   44 sec   (3653 perm/sec)   p_kst 3.719750e-01   p_cons 3.875000e-04   p_joint 1.543750e-03

Joint ci ratio: 2.467530e-01	ci left: 1.299559e-03	ci right 1.670717e-03	k: 251	n:170000
Cons ci ratio: 4.718154e-01	ci left: 3.106286e-04	ci right 5.070682e-04	k: 68	n:170000
KS ci ratio: 1.235947e-02	ci left: 3.694490e-01	ci right 3.740495e-01	k: 63197	n:170000
CYP27B1   170000 perm   47 sec   (3609 perm/sec)   p_kst 3.717471e-01   p_cons 4.000000e-04   p_joint 1.476471e-03

Joint ci ratio: 2.544630e-01	ci left: 1.149248e-03	ci right 1.489361e-03	k: 236	n:180000
Cons ci ratio: 4.587070e-01	ci left: 3.129881e-04	ci right 5.037077e-04	k: 72	n:180000
KS ci ratio: 1.203307e-02	ci left: 3.686678e-01	ci right 3.731364e-01	k: 66762	n:180000
CYP27B1   180000 perm   50 sec   (3569 perm/sec)   p_kst 3.709000e-01   p_cons 4.000000e-04   p_joint 1.311111e-03

Joint ci ratio: 2.448342e-01	ci left: 1.182510e-03	ci right 1.517212e-03	k: 255	n:190000
Cons ci ratio: 4.354616e-01	ci left: 3.338822e-04	ci right 5.240095e-04	k: 80	n:190000
KS ci ratio: 1.171293e-02	ci left: 3.686958e-01	ci right 3.730450e-01	k: 70465	n:190000
CYP27B1   190000 perm   54 sec   (3522 perm/sec)   p_kst 3.708684e-01   p_cons 4.210526e-04   p_joint 1.342105e-03

Joint ci ratio: 2.379611e-01	ci left: 1.193850e-03	ci right 1.520878e-03	k: 270	n:200000
Cons ci ratio: 4.276162e-01	ci left: 3.305583e-04	ci right 5.144294e-04	k: 83	n:200000
KS ci ratio: 1.141045e-02	ci left: 3.689921e-01	ci right 3.732316e-01	k: 74222	n:200000
CYP27B1   200000 perm   58 sec   (3471 perm/sec)   p_kst 3.711100e-01   p_cons 4.150000e-04   p_joint 1.350000e-03

Joint ci ratio: 1.761612e-01	ci left: 2.145148e-03	ci right 2.564016e-03	k: 493	n:210000
Cons ci ratio: 4.177848e-01	ci left: 3.318388e-04	ci right 5.109952e-04	k: 87	n:210000
KS ci ratio: 1.116473e-02	ci left: 3.678203e-01	ci right 3.719547e-01	k: 77676	n:210000
CYP27B1   210000 perm   61 sec   (3420 perm/sec)   p_kst 3.698857e-01   p_cons 4.142857e-04   p_joint 2.347619e-03

Joint ci ratio: 1.745838e-01	ci left: 2.086749e-03	ci right 2.490180e-03	k: 502	n:220000
Cons ci ratio: 4.042298e-01	ci left: 3.412086e-04	ci right 5.178448e-04	k: 93	n:220000
KS ci ratio: 1.092293e-02	ci left: 3.672328e-01	ci right 3.712706e-01	k: 81235	n:220000
CYP27B1   220000 perm   65 sec   (3377 perm/sec)   p_kst 3.692500e-01   p_cons 4.227273e-04   p_joint 2.281818e-03

Joint ci ratio: 1.812113e-01	ci left: 1.846445e-03	ci right 2.218457e-03	k: 466	n:230000
Cons ci ratio: 3.979309e-01	ci left: 3.381010e-04	ci right 5.096827e-04	k: 96	n:230000
KS ci ratio: 1.068498e-02	ci left: 3.671838e-01	ci right 3.711325e-01	k: 84906	n:230000
CYP27B1   230000 perm   69 sec   (3337 perm/sec)   p_kst 3.691565e-01   p_cons 4.173913e-04   p_joint 2.026087e-03

Joint ci ratio: 1.294858e-01	ci left: 3.557771e-03	ci right 4.054331e-03	k: 912	n:240000
Cons ci ratio: 3.843035e-01	ci left: 3.503128e-04	ci right 5.204656e-04	k: 103	n:240000
KS ci ratio: 1.046072e-02	ci left: 3.671939e-01	ci right 3.710593e-01	k: 88590	n:240000
CYP27B1   240000 perm   73 sec   (3299 perm/sec)   p_kst 3.691250e-01   p_cons 4.291667e-04   p_joint 3.800000e-03

Joint ci ratio: 1.286499e-01	ci left: 3.461899e-03	ci right 3.941720e-03	k: 924	n:250000
Cons ci ratio: 3.771199e-01	ci left: 3.507692e-04	ci right 5.171711e-04	k: 107	n:250000
KS ci ratio: 1.024368e-02	ci left: 3.674916e-01	ci right 3.712794e-01	k: 92346	n:250000
CYP27B1   250000 perm   77 sec   (3253 perm/sec)   p_kst 3.693840e-01   p_cons 4.280000e-04   p_joint 3.696000e-03

Joint ci ratio: 1.329847e-01	ci left: 3.109213e-03	ci right 3.555818e-03	k: 865	n:260000
Cons ci ratio: 3.638810e-01	ci left: 3.651837e-04	ci right 5.308999e-04	k: 115	n:260000
KS ci ratio: 1.003728e-02	ci left: 3.678748e-01	ci right 3.715897e-01	k: 96130	n:260000
CYP27B1   260000 perm   81 sec   (3216 perm/sec)   p_kst 3.697308e-01   p_cons 4.423077e-04   p_joint 3.326923e-03

Joint ci ratio: 1.378696e-01	ci left: 2.779328e-03	ci right 3.194417e-03	k: 805	n:270000
Cons ci ratio: 3.607857e-01	ci left: 3.583912e-04	ci right 5.193163e-04	k: 117	n:270000
KS ci ratio: 9.852265e-03	ci left: 3.677862e-01	ci right 3.714314e-01	k: 99794	n:270000
CYP27B1   270000 perm   85 sec   (3184 perm/sec)   p_kst 3.696074e-01   p_cons 4.333333e-04   p_joint 2.981481e-03

Joint ci ratio: 1.362754e-01	ci left: 2.745593e-03	ci right 3.150518e-03	k: 824	n:280000
Cons ci ratio: 3.548222e-01	ci left: 3.585932e-04	ci right 5.163338e-04	k: 121	n:280000
KS ci ratio: 9.673332e-03	ci left: 3.678866e-01	ci right 3.714661e-01	k: 103509	n:280000
CYP27B1   280000 perm   89 sec   (3132 perm/sec)   p_kst 3.696750e-01   p_cons 4.321429e-04   p_joint 2.942857e-03

Joint ci ratio: 1.368659e-01	ci left: 2.627593e-03	ci right 3.016931e-03	k: 817	n:290000
Cons ci ratio: 3.464053e-01	ci left: 3.650960e-04	ci right 5.210332e-04	k: 127	n:290000
KS ci ratio: 9.514081e-03	ci left: 3.674776e-01	ci right 3.709940e-01	k: 107078	n:290000
CYP27B1   290000 perm   94 sec   (3077 perm/sec)   p_kst 3.692345e-01   p_cons 4.379310e-04   p_joint 2.817241e-03

Joint ci ratio: 1.345820e-01	ci left: 2.630171e-03	ci right 3.012867e-03	k: 845	n:300000
Cons ci ratio: 3.385602e-01	ci left: 3.712065e-04	ci right 5.253786e-04	k: 133	n:300000
KS ci ratio: 9.353859e-03	ci left: 3.675227e-01	ci right 3.709799e-01	k: 110775	n:300000
CYP27B1   300000 perm   99 sec   (3043 perm/sec)   p_kst 3.692500e-01   p_cons 4.433333e-04   p_joint 2.816667e-03

Joint ci ratio: 1.363778e-01	ci left: 2.476751e-03	ci right 2.842322e-03	k: 823	n:310000
Cons ci ratio: 3.348337e-01	ci left: 3.680913e-04	ci right 5.189236e-04	k: 136	n:310000
KS ci ratio: 9.200641e-03	ci left: 3.676072e-01	ci right 3.710082e-01	k: 114485	n:310000
CYP27B1   310000 perm   103 sec   (3013 perm/sec)   p_kst 3.693065e-01   p_cons 4.387097e-04   p_joint 2.654839e-03

Joint ci ratio: 1.258679e-01	ci left: 2.831623e-03	ci right 3.214965e-03	k: 966	n:320000
Cons ci ratio: 3.300503e-01	ci left: 3.680452e-04	ci right 5.162468e-04	k: 140	n:320000
KS ci ratio: 9.055806e-03	ci left: 3.676306e-01	ci right 3.709780e-01	k: 118177	n:320000
CYP27B1   320000 perm   109 sec   (2944 perm/sec)   p_kst 3.693031e-01   p_cons 4.375000e-04   p_joint 3.018750e-03

Joint ci ratio: 1.239598e-01	ci left: 2.833885e-03	ci right 3.211290e-03	k: 996	n:330000
Cons ci ratio: 3.265949e-01	ci left: 3.652339e-04	ci right 5.104407e-04	k: 143	n:330000
KS ci ratio: 8.916501e-03	ci left: 3.677105e-01	ci right 3.710069e-01	k: 121888	n:330000
CYP27B1   330000 perm   113 sec   (2917 perm/sec)   p_kst 3.693576e-01   p_cons 4.333333e-04   p_joint 3.018182e-03

Joint ci ratio: 1.258139e-01	ci left: 2.667891e-03	ci right 3.028900e-03	k: 967	n:340000
Cons ci ratio: 3.199956e-01	ci left: 3.707071e-04	ci right 5.145017e-04	k: 149	n:340000
KS ci ratio: 8.784376e-03	ci left: 3.677362e-01	ci right 3.709837e-01	k: 125582	n:340000
CYP27B1   340000 perm   118 sec   (2884 perm/sec)   p_kst 3.693588e-01   p_cons 4.382353e-04   p_joint 2.844118e-03

Joint ci ratio: 1.237839e-01	ci left: 2.680241e-03	ci right 3.036640e-03	k: 999	n:350000
Cons ci ratio: 3.158126e-01	ci left: 3.706323e-04	ci right 5.121390e-04	k: 153	n:350000
KS ci ratio: 8.659176e-03	ci left: 3.676951e-01	ci right 3.708957e-01	k: 129253	n:350000
CYP27B1   350000 perm   122 sec   (2859 perm/sec)   p_kst 3.692943e-01   p_cons 4.371429e-04   p_joint 2.854286e-03

Joint ci ratio: 1.130190e-01	ci left: 3.142270e-03	ci right 3.521350e-03	k: 1198	n:360000
Cons ci ratio: 3.098339e-01	ci left: 3.756956e-04	ci right 5.158835e-04	k: 159	n:360000
KS ci ratio: 8.531497e-03	ci left: 3.680756e-01	ci right 3.712320e-01	k: 133075	n:360000
CYP27B1   360000 perm   127 sec   (2833 perm/sec)   p_kst 3.696528e-01   p_cons 4.416667e-04   p_joint 3.327778e-03

Joint ci ratio: 1.112688e-01	ci left: 3.157167e-03	ci right 3.531759e-03	k: 1236	n:370000
Cons ci ratio: 3.051031e-01	ci left: 3.780128e-04	ci right 5.164934e-04	k: 164	n:370000
KS ci ratio: 8.414517e-03	ci left: 3.681470e-01	ci right 3.712605e-01	k: 136790	n:370000
CYP27B1   370000 perm   132 sec   (2801 perm/sec)   p_kst 3.697027e-01   p_cons 4.432432e-04   p_joint 3.340541e-03

Joint ci ratio: 1.098571e-01	ci left: 3.155965e-03	ci right 3.525357e-03	k: 1268	n:380000
Cons ci ratio: 3.005826e-01	ci left: 3.802234e-04	ci right 5.170560e-04	k: 169	n:380000
KS ci ratio: 8.300205e-03	ci left: 3.683279e-01	ci right 3.714004e-01	k: 140548	n:380000
CYP27B1   380000 perm   137 sec   (2773 perm/sec)   p_kst 3.698632e-01   p_cons 4.447368e-04   p_joint 3.336842e-03

Joint ci ratio: 1.089610e-01	ci left: 3.127413e-03	ci right 3.490285e-03	k: 1289	n:390000
Cons ci ratio: 2.988309e-01	ci left: 3.752166e-04	ci right 5.093110e-04	k: 171	n:390000
KS ci ratio: 8.191959e-03	ci left: 3.684127e-01	ci right 3.714456e-01	k: 144272	n:390000
CYP27B1   390000 perm   143 sec   (2737 perm/sec)   p_kst 3.699282e-01   p_cons 4.384615e-04   p_joint 3.305128e-03

Joint ci ratio: 1.124282e-01	ci left: 2.859603e-03	ci right 3.202659e-03	k: 1211	n:400000
Cons ci ratio: 2.971094e-01	ci left: 3.704623e-04	ci right 5.019512e-04	k: 173	n:400000
KS ci ratio: 8.089142e-03	ci left: 3.684186e-01	ci right 3.714133e-01	k: 147966	n:400000
CYP27B1   400000 perm   149 sec   (2687 perm/sec)   p_kst 3.699150e-01   p_cons 4.325000e-04   p_joint 3.027500e-03

Joint ci ratio: 1.168154e-01	ci left: 2.578983e-03	ci right 2.901279e-03	k: 1122	n:410000
Cons ci ratio: 2.962605e-01	ci left: 3.636840e-04	ci right 4.923288e-04	k: 174	n:410000
KS ci ratio: 7.990895e-03	ci left: 3.683781e-01	ci right 3.713360e-01	k: 151641	n:410000
CYP27B1   410000 perm   154 sec   (2664 perm/sec)   p_kst 3.698561e-01   p_cons 4.243902e-04   p_joint 2.736585e-03

Joint ci ratio: 1.163012e-01	ci left: 2.540691e-03	ci right 2.856708e-03	k: 1132	n:420000
Cons ci ratio: 2.954188e-01	ci left: 3.572289e-04	ci right 4.831641e-04	k: 175	n:420000
KS ci ratio: 7.897475e-03	ci left: 3.682612e-01	ci right 3.711834e-01	k: 155283	n:420000
CYP27B1   420000 perm   159 sec   (2640 perm/sec)   p_kst 3.697214e-01   p_cons 4.166667e-04   p_joint 2.695238e-03

Joint ci ratio: 1.155405e-01	ci left: 2.515475e-03	ci right 2.826170e-03	k: 1147	n:430000
Cons ci ratio: 2.913096e-01	ci left: 3.596937e-04	ci right 4.844088e-04	k: 180	n:430000
KS ci ratio: 7.806359e-03	ci left: 3.682035e-01	ci right 3.710913e-01	k: 158948	n:430000
CYP27B1   430000 perm   164 sec   (2618 perm/sec)   p_kst 3.696465e-01   p_cons 4.186047e-04   p_joint 2.667442e-03

Joint ci ratio: 1.139624e-01	ci left: 2.528946e-03	ci right 2.836752e-03	k: 1179	n:440000
Cons ci ratio: 2.889255e-01	ci left: 3.578408e-04	ci right 4.807125e-04	k: 183	n:440000
KS ci ratio: 7.717611e-03	ci left: 3.681916e-01	ci right 3.710464e-01	k: 162632	n:440000
CYP27B1   440000 perm   170 sec   (2594 perm/sec)   p_kst 3.696182e-01   p_cons 4.159091e-04   p_joint 2.679545e-03

Joint ci ratio: 1.146497e-01	ci left: 2.442520e-03	ci right 2.741720e-03	k: 1165	n:450000
Cons ci ratio: 2.828410e-01	ci left: 3.663924e-04	ci right 4.890785e-04	k: 191	n:450000
KS ci ratio: 7.628766e-03	ci left: 3.683671e-01	ci right 3.711902e-01	k: 166400	n:450000
CYP27B1   450000 perm   175 sec   (2568 perm/sec)   p_kst 3.697778e-01   p_cons 4.244444e-04   p_joint 2.588889e-03

Joint ci ratio: 1.129657e-01	ci left: 2.463344e-03	ci right 2.760368e-03	k: 1200	n:460000
Cons ci ratio: 2.778210e-01	ci left: 3.725753e-04	ci right 4.947305e-04	k: 198	n:460000
KS ci ratio: 7.545698e-03	ci left: 3.683634e-01	ci right 3.711556e-01	k: 170089	n:460000
CYP27B1   460000 perm   181 sec   (2543 perm/sec)   p_kst 3.697587e-01   p_cons 4.304348e-04   p_joint 2.608696e-03

Joint ci ratio: 1.115348e-01	ci left: 2.475039e-03	ci right 2.769444e-03	k: 1231	n:470000
Cons ci ratio: 2.757507e-01	ci left: 3.705882e-04	ci right 4.910292e-04	k: 201	n:470000
KS ci ratio: 7.464094e-03	ci left: 3.684345e-01	ci right 3.711969e-01	k: 173813	n:470000
CYP27B1   470000 perm   186 sec   (2522 perm/sec)   p_kst 3.698149e-01   p_cons 4.276596e-04   p_joint 2.619149e-03

Joint ci ratio: 1.179494e-01	ci left: 2.160388e-03	ci right 2.433175e-03	k: 1101	n:480000
Cons ci ratio: 2.730604e-01	ci left: 3.706276e-04	ci right 4.897047e-04	k: 205	n:480000
KS ci ratio: 7.386798e-03	ci left: 3.683945e-01	ci right 3.711279e-01	k: 177485	n:480000
CYP27B1   480000 perm   192 sec   (2499 perm/sec)   p_kst 3.697604e-01   p_cons 4.270833e-04   p_joint 2.293750e-03

Joint ci ratio: 1.173137e-01	ci left: 2.140066e-03	ci right 2.408730e-03	k: 1113	n:490000
Cons ci ratio: 2.717451e-01	ci left: 3.668665e-04	ci right 4.840706e-04	k: 207	n:490000
KS ci ratio: 7.309773e-03	ci left: 3.684889e-01	ci right 3.711943e-01	k: 181222	n:490000
CYP27B1   490000 perm   198 sec   (2471 perm/sec)   p_kst 3.698408e-01   p_cons 4.224490e-04   p_joint 2.271429e-03

Joint ci ratio: 9.657946e-02	ci left: 3.125352e-03	ci right 3.444447e-03	k: 1641	n:500000
Cons ci ratio: 2.685365e-01	ci left: 3.688521e-04	ci right 4.850648e-04	k: 212	n:500000
KS ci ratio: 7.234085e-03	ci left: 3.686455e-01	ci right 3.713240e-01	k: 184992	n:500000
CYP27B1   500000 perm   205 sec   (2444 perm/sec)   p_kst 3.699840e-01   p_cons 4.240000e-04   p_joint 3.282000e-03

Joint ci ratio: 9.948098e-02	ci left: 2.884256e-03	ci right 3.188099e-03	k: 1547	n:510000
Cons ci ratio: 2.636303e-01	ci left: 3.762599e-04	ci right 4.922835e-04	k: 220	n:510000
KS ci ratio: 7.161753e-03	ci left: 3.687276e-01	ci right 3.713798e-01	k: 188727	n:510000
CYP27B1   510000 perm   211 sec   (2416 perm/sec)   p_kst 3.700529e-01   p_cons 4.313725e-04   p_joint 3.033333e-03

Joint ci ratio: 9.846827e-02	ci left: 2.888805e-03	ci right 3.189851e-03	k: 1579	n:520000
Cons ci ratio: 2.612765e-01	ci left: 3.762104e-04	ci right 4.910138e-04	k: 224	n:520000
KS ci ratio: 7.092454e-03	ci left: 3.687471e-01	ci right 3.713736e-01	k: 192431	n:520000
CYP27B1   520000 perm   218 sec   (2386 perm/sec)   p_kst 3.700596e-01   p_cons 4.307692e-04   p_joint 3.036538e-03

Joint ci ratio: 9.828411e-02	ci left: 2.845339e-03	ci right 3.141268e-03	k: 1585	n:530000
Cons ci ratio: 2.601236e-01	ci left: 3.726390e-04	ci right 4.857691e-04	k: 226	n:530000
KS ci ratio: 7.023623e-03	ci left: 3.688659e-01	ci right 3.714676e-01	k: 196188	n:530000
CYP27B1   530000 perm   224 sec   (2362 perm/sec)   p_kst 3.701660e-01   p_cons 4.264151e-04   p_joint 2.990566e-03

Joint ci ratio: 9.785462e-02	ci left: 2.817935e-03	ci right 3.109660e-03	k: 1599	n:540000
Cons ci ratio: 2.578617e-01	ci left: 3.726649e-04	ci right 4.846606e-04	k: 230	n:540000
KS ci ratio: 6.956702e-03	ci left: 3.689841e-01	ci right 3.715618e-01	k: 199947	n:540000
CYP27B1   540000 perm   230 sec   (2343 perm/sec)   p_kst 3.702722e-01   p_cons 4.259259e-04   p_joint 2.961111e-03

Joint ci ratio: 1.004068e-01	ci left: 2.624838e-03	ci right 2.904077e-03	k: 1519	n:550000
Cons ci ratio: 2.567531e-01	ci left: 3.692909e-04	ci right 4.797191e-04	k: 232	n:550000
KS ci ratio: 6.893592e-03	ci left: 3.689673e-01	ci right 3.715214e-01	k: 203634	n:550000
CYP27B1   550000 perm   237 sec   (2322 perm/sec)   p_kst 3.702436e-01   p_cons 4.218182e-04   p_joint 2.761818e-03

Joint ci ratio: 1.088891e-01	ci left: 2.183173e-03	ci right 2.436305e-03	k: 1292	n:560000
Cons ci ratio: 2.529805e-01	ci left: 3.743982e-04	ci right 4.844493e-04	k: 239	n:560000
KS ci ratio: 6.833190e-03	ci left: 3.688816e-01	ci right 3.714126e-01	k: 207282	n:560000
CYP27B1   560000 perm   245 sec   (2286 perm/sec)   p_kst 3.701464e-01   p_cons 4.267857e-04   p_joint 2.307143e-03

Joint ci ratio: 1.125257e-01	ci left: 2.004984e-03	ci right 2.245735e-03	k: 1210	n:570000
Cons ci ratio: 2.514143e-01	ci left: 3.727603e-04	ci right 4.815453e-04	k: 242	n:570000
KS ci ratio: 6.771442e-03	ci left: 3.689989e-01	ci right 3.715077e-01	k: 211044	n:570000
CYP27B1   570000 perm   252 sec   (2264 perm/sec)   p_kst 3.702526e-01   p_cons 4.245614e-04   p_joint 2.122807e-03

Joint ci ratio: 1.115626e-01	ci left: 2.005608e-03	ci right 2.244237e-03	k: 1231	n:580000
Cons ci ratio: 2.478689e-01	ci left: 3.776475e-04	ci right 4.860651e-04	k: 249	n:580000
KS ci ratio: 6.714764e-03	ci left: 3.688744e-01	ci right 3.713614e-01	k: 214668	n:580000
CYP27B1   580000 perm   259 sec   (2243 perm/sec)   p_kst 3.701172e-01   p_cons 4.293103e-04   p_joint 2.122414e-03

Joint ci ratio: 1.178142e-01	ci left: 1.762517e-03	ci right 1.984792e-03	k: 1104	n:590000
Cons ci ratio: 2.463952e-01	ci left: 3.760165e-04	ci right 4.832258e-04	k: 252	n:590000
KS ci ratio: 6.656241e-03	ci left: 3.689813e-01	ci right 3.714471e-01	k: 218426	n:590000
CYP27B1   590000 perm   265 sec   (2224 perm/sec)   p_kst 3.702136e-01   p_cons 4.271186e-04   p_joint 1.871186e-03

Joint ci ratio: 1.165030e-01	ci left: 1.773588e-03	ci right 1.994599e-03	k: 1129	n:600000
Cons ci ratio: 2.430552e-01	ci left: 3.807009e-04	ci right 4.875525e-04	k: 259	n:600000
KS ci ratio: 6.600873e-03	ci left: 3.689680e-01	ci right 3.714132e-01	k: 222114	n:600000
CYP27B1   600000 perm   272 sec   (2207 perm/sec)   p_kst 3.701900e-01   p_cons 4.316667e-04   p_joint 1.881667e-03

Joint ci ratio: 1.204109e-01	ci left: 1.629969e-03	ci right 1.840382e-03	k: 1057	n:610000
Cons ci ratio: 2.402980e-01	ci left: 3.837005e-04	ci right 4.899903e-04	k: 265	n:610000
KS ci ratio: 6.548292e-03	ci left: 3.688537e-01	ci right 3.712786e-01	k: 225740	n:610000
CYP27B1   610000 perm   279 sec   (2188 perm/sec)   p_kst 3.700656e-01   p_cons 4.344262e-04   p_joint 1.732787e-03

Joint ci ratio: 1.196783e-01	ci left: 1.624017e-03	ci right 1.832296e-03	k: 1070	n:620000
Cons ci ratio: 2.394002e-01	ci left: 3.805436e-04	ci right 4.855067e-04	k: 267	n:620000
KS ci ratio: 6.497126e-03	ci left: 3.687303e-01	ci right 3.711354e-01	k: 229358	n:620000
CYP27B1   620000 perm   285 sec   (2172 perm/sec)   p_kst 3.699323e-01   p_cons 4.306452e-04   p_joint 1.725806e-03

Joint ci ratio: 1.199045e-01	ci left: 1.592079e-03	ci right 1.796674e-03	k: 1066	n:630000
Cons ci ratio: 2.363331e-01	ci left: 3.849523e-04	ci right 4.895721e-04	k: 274	n:630000
KS ci ratio: 6.445495e-03	ci left: 3.687299e-01	ci right 3.711158e-01	k: 233051	n:630000
CYP27B1   630000 perm   292 sec   (2155 perm/sec)   p_kst 3.699222e-01   p_cons 4.349206e-04   p_joint 1.692063e-03

Joint ci ratio: 1.196816e-01	ci left: 1.573264e-03	ci right 1.775039e-03	k: 1070	n:640000
Cons ci ratio: 2.329681e-01	ci left: 3.907028e-04	ci right 4.951559e-04	k: 282	n:640000
KS ci ratio: 6.394689e-03	ci left: 3.687576e-01	ci right 3.711248e-01	k: 236762	n:640000
CYP27B1   640000 perm   299 sec   (2139 perm/sec)   p_kst 3.699406e-01   p_cons 4.406250e-04   p_joint 1.671875e-03

Joint ci ratio: 1.186337e-01	ci left: 1.577420e-03	ci right 1.777832e-03	k: 1089	n:650000
Cons ci ratio: 2.301388e-01	ci left: 3.948367e-04	ci right 4.989308e-04	k: 289	n:650000
KS ci ratio: 6.345987e-03	ci left: 3.687169e-01	ci right 3.710658e-01	k: 240429	n:650000
CYP27B1   650000 perm   306 sec   (2122 perm/sec)   p_kst 3.698908e-01   p_cons 4.446154e-04   p_joint 1.675385e-03

Joint ci ratio: 1.180401e-01	ci left: 1.569693e-03	ci right 1.768056e-03	k: 1100	n:660000
Cons ci ratio: 2.277941e-01	ci left: 3.974239e-04	ci right 5.009826e-04	k: 295	n:660000
KS ci ratio: 6.298648e-03	ci left: 3.686579e-01	ci right 3.709887e-01	k: 244083	n:660000
CYP27B1   660000 perm   313 sec   (2106 perm/sec)   p_kst 3.698227e-01   p_cons 4.469697e-04   p_joint 1.666667e-03

Joint ci ratio: 1.183651e-01	ci left: 1.537572e-03	ci right 1.732449e-03	k: 1094	n:670000
Cons ci ratio: 2.247762e-01	ci left: 4.027558e-04	ci right 5.061210e-04	k: 303	n:670000
KS ci ratio: 6.250250e-03	ci left: 3.687572e-01	ci right 3.710707e-01	k: 247842	n:670000
CYP27B1   670000 perm   321 sec   (2089 perm/sec)   p_kst 3.699134e-01   p_cons 4.522388e-04   p_joint 1.632836e-03

Joint ci ratio: 1.246843e-01	ci left: 1.360954e-03	ci right 1.543335e-03	k: 986	n:680000
Cons ci ratio: 2.240409e-01	ci left: 3.996087e-04	ci right 5.017844e-04	k: 305	n:680000
KS ci ratio: 6.204419e-03	ci left: 3.687435e-01	ci right 3.710399e-01	k: 251526	n:680000
CYP27B1   680000 perm   330 sec   (2061 perm/sec)   p_kst 3.698912e-01   p_cons 4.485294e-04   p_joint 1.450000e-03

Joint ci ratio: 1.087865e-01	ci left: 1.776060e-03	ci right 1.981781e-03	k: 1295	n:690000
Cons ci ratio: 2.215211e-01	ci left: 4.033962e-04	ci right 5.052221e-04	k: 312	n:690000
KS ci ratio: 6.160749e-03	ci left: 3.686419e-01	ci right 3.709215e-01	k: 255149	n:690000
CYP27B1   690000 perm   338 sec   (2043 perm/sec)   p_kst 3.697812e-01   p_cons 4.521739e-04   p_joint 1.876812e-03

Joint ci ratio: 1.079977e-01	ci left: 1.777095e-03	ci right 1.981349e-03	k: 1314	n:700000
Cons ci ratio: 2.204673e-01	ci left: 4.016819e-04	ci right 5.025273e-04	k: 315	n:700000
KS ci ratio: 6.116995e-03	ci left: 3.686190e-01	ci right 3.708821e-01	k: 258825	n:700000
CYP27B1   700000 perm   346 sec   (2022 perm/sec)   p_kst 3.697500e-01   p_cons 4.500000e-04   p_joint 1.877143e-03

Joint ci ratio: 1.080403e-01	ci left: 1.750693e-03	ci right 1.951997e-03	k: 1313	n:710000
Cons ci ratio: 2.184034e-01	ci left: 4.040107e-04	ci right 5.043638e-04	k: 321	n:710000
KS ci ratio: 6.074123e-03	ci left: 3.685995e-01	ci right 3.708466e-01	k: 262503	n:710000
CYP27B1   710000 perm   354 sec   (2008 perm/sec)   p_kst 3.697225e-01   p_cons 4.521127e-04   p_joint 1.849296e-03

Joint ci ratio: 1.076322e-01	ci left: 1.739892e-03	ci right 1.939150e-03	k: 1323	n:720000
Cons ci ratio: 2.173932e-01	ci left: 4.023387e-04	ci right 5.017525e-04	k: 324	n:720000
KS ci ratio: 6.031349e-03	ci left: 3.686417e-01	ci right 3.708732e-01	k: 266225	n:720000
CYP27B1   720000 perm   362 sec   (1992 perm/sec)   p_kst 3.697569e-01   p_cons 4.500000e-04   p_joint 1.837500e-03

Joint ci ratio: 1.069079e-01	ci left: 1.740054e-03	ci right 1.937905e-03	k: 1341	n:730000
Cons ci ratio: 2.154137e-01	ci left: 4.046010e-04	ci right 5.035431e-04	k: 330	n:730000
KS ci ratio: 5.990188e-03	ci left: 3.686267e-01	ci right 3.708428e-01	k: 269906	n:730000
CYP27B1   730000 perm   369 sec   (1978 perm/sec)   p_kst 3.697342e-01   p_cons 4.520548e-04   p_joint 1.836986e-03

Joint ci ratio: 1.060810e-01	ci left: 1.744162e-03	ci right 1.940851e-03	k: 1362	n:740000
Cons ci ratio: 2.138048e-01	ci left: 4.055270e-04	ci right 5.038578e-04	k: 335	n:740000
KS ci ratio: 5.948909e-03	ci left: 3.686864e-01	ci right 3.708876e-01	k: 273642	n:740000
CYP27B1   740000 perm   377 sec   (1965 perm/sec)   p_kst 3.697865e-01   p_cons 4.527027e-04   p_joint 1.840541e-03

Joint ci ratio: 1.056175e-01	ci left: 1.736483e-03	ci right 1.931397e-03	k: 1374	n:750000
Cons ci ratio: 2.125435e-01	ci left: 4.051686e-04	ci right 5.027573e-04	k: 339	n:750000
KS ci ratio: 5.908658e-03	ci left: 3.687299e-01	ci right 3.709164e-01	k: 277367	n:750000
CYP27B1   750000 perm   384 sec   (1952 perm/sec)   p_kst 3.698227e-01   p_cons 4.520000e-04   p_joint 1.832000e-03

Joint ci ratio: 1.067526e-01	ci left: 1.676487e-03	ci right 1.866816e-03	k: 1345	n:760000
Cons ci ratio: 2.119215e-01	ci left: 4.023291e-04	ci right 4.989135e-04	k: 341	n:760000
KS ci ratio: 5.870009e-03	ci left: 3.687092e-01	ci right 3.708812e-01	k: 281044	n:760000
CYP27B1   760000 perm   392 sec   (1939 perm/sec)   p_kst 3.697947e-01   p_cons 4.486842e-04   p_joint 1.769737e-03

Joint ci ratio: 1.070330e-01	ci left: 1.645865e-03	ci right 1.833240e-03	k: 1338	n:770000
Cons ci ratio: 2.103891e-01	ci left: 4.032542e-04	ci right 4.992704e-04	k: 346	n:770000
KS ci ratio: 5.832790e-03	ci left: 3.686346e-01	ci right 3.707923e-01	k: 284679	n:770000
CYP27B1   770000 perm   400 sec   (1927 perm/sec)   p_kst 3.697130e-01   p_cons 4.493506e-04   p_joint 1.737662e-03

Joint ci ratio: 1.065174e-01	ci left: 1.640986e-03	ci right 1.826848e-03	k: 1351	n:780000
Cons ci ratio: 2.094857e-01	ci left: 4.017282e-04	ci right 4.969176e-04	k: 349	n:780000
KS ci ratio: 5.795298e-03	ci left: 3.686401e-01	ci right 3.707839e-01	k: 288375	n:780000
CYP27B1   780000 perm   408 sec   (1914 perm/sec)   p_kst 3.697115e-01   p_cons 4.474359e-04   p_joint 1.732051e-03

Joint ci ratio: 1.057767e-01	ci left: 1.643626e-03	ci right 1.828413e-03	k: 1370	n:790000
Cons ci ratio: 2.082988e-01	ci left: 4.014414e-04	ci right 4.959553e-04	k: 353	n:790000
KS ci ratio: 5.757410e-03	ci left: 3.687353e-01	ci right 3.708656e-01	k: 292142	n:790000
CYP27B1   790000 perm   416 sec   (1901 perm/sec)   p_kst 3.698000e-01   p_cons 4.468354e-04   p_joint 1.734177e-03

Joint ci ratio: 1.049755e-01	ci left: 1.648639e-03	ci right 1.832499e-03	k: 1391	n:800000
Cons ci ratio: 2.071319e-01	ci left: 4.011633e-04	ci right 4.950156e-04	k: 357	n:800000
KS ci ratio: 5.721789e-03	ci left: 3.687033e-01	ci right 3.708202e-01	k: 295809	n:800000
CYP27B1   800000 perm   424 sec   (1889 perm/sec)   p_kst 3.697612e-01   p_cons 4.462500e-04   p_joint 1.738750e-03

Joint ci ratio: 1.069976e-01	ci left: 1.565786e-03	ci right 1.743981e-03	k: 1339	n:810000
Cons ci ratio: 2.057004e-01	ci left: 4.020645e-04	ci right 4.953957e-04	k: 362	n:810000
KS ci ratio: 5.686369e-03	ci left: 3.687091e-01	ci right 3.708129e-01	k: 299506	n:810000
CYP27B1   810000 perm   432 sec   (1877 perm/sec)   p_kst 3.697605e-01   p_cons 4.469136e-04   p_joint 1.653086e-03

Joint ci ratio: 1.070787e-01	ci left: 1.544317e-03	ci right 1.720210e-03	k: 1337	n:820000
Cons ci ratio: 2.037450e-01	ci left: 4.052603e-04	ci right 4.983278e-04	k: 369	n:820000
KS ci ratio: 5.652072e-03	ci left: 3.686758e-01	ci right 3.707666e-01	k: 303171	n:820000
CYP27B1   820000 perm   441 sec   (1860 perm/sec)   p_kst 3.697207e-01   p_cons 4.500000e-04   p_joint 1.630488e-03

Joint ci ratio: 1.064048e-01	ci left: 1.545645e-03	ci right 1.720513e-03	k: 1354	n:830000
Cons ci ratio: 2.029242e-01	ci left: 4.038081e-04	ci right 4.961222e-04	k: 372	n:830000
KS ci ratio: 5.616892e-03	ci left: 3.687673e-01	ci right 3.708456e-01	k: 306939	n:830000
CYP27B1   830000 perm   450 sec   (1846 perm/sec)   p_kst 3.698060e-01   p_cons 4.481928e-04   p_joint 1.631325e-03

Joint ci ratio: 1.101756e-01	ci left: 1.421840e-03	ci right 1.588771e-03	k: 1263	n:840000
Cons ci ratio: 2.013113e-01	ci left: 4.057823e-04	ci right 4.977198e-04	k: 378	n:840000
KS ci ratio: 5.583259e-03	ci left: 3.687818e-01	ci right 3.708477e-01	k: 310644	n:840000
CYP27B1   840000 perm   458 sec   (1832 perm/sec)   p_kst 3.698143e-01   p_cons 4.500000e-04   p_joint 1.503571e-03

Joint ci ratio: 1.129864e-01	ci left: 1.334203e-03	ci right 1.495108e-03	k: 1201	n:850000
Cons ci ratio: 2.005195e-01	ci left: 4.043602e-04	ci right 4.955710e-04	k: 381	n:850000
KS ci ratio: 5.549103e-03	ci left: 3.688900e-01	ci right 3.709438e-01	k: 314429	n:850000
CYP27B1   850000 perm   467 sec   (1821 perm/sec)   p_kst 3.699165e-01   p_cons 4.482353e-04   p_joint 1.412941e-03

Joint ci ratio: 1.062509e-01	ci left: 1.496253e-03	ci right 1.665272e-03	k: 1358	n:860000
Cons ci ratio: 1.989628e-01	ci left: 4.062862e-04	ci right 4.971337e-04	k: 387	n:860000
KS ci ratio: 5.517616e-03	ci left: 3.688226e-01	ci right 3.708644e-01	k: 318065	n:860000
CYP27B1   860000 perm   475 sec   (1809 perm/sec)   p_kst 3.698430e-01   p_cons 4.500000e-04   p_joint 1.579070e-03

Joint ci ratio: 1.104852e-01	ci left: 1.364985e-03	ci right 1.525720e-03	k: 1256	n:870000
Cons ci ratio: 1.981983e-01	ci left: 4.048930e-04	ci right 4.950391e-04	k: 390	n:870000
KS ci ratio: 5.485455e-03	ci left: 3.688590e-01	ci right 3.708890e-01	k: 321790	n:870000
CYP27B1   870000 perm   484 sec   (1797 perm/sec)   p_kst 3.698736e-01   p_cons 4.482759e-04   p_joint 1.443678e-03

Joint ci ratio: 1.099184e-01	ci left: 1.363839e-03	ci right 1.523562e-03	k: 1269	n:880000
Cons ci ratio: 1.974424e-01	ci left: 4.035322e-04	ci right 4.929914e-04	k: 393	n:880000
KS ci ratio: 5.453503e-03	ci left: 3.689241e-01	ci right 3.709426e-01	k: 325541	n:880000
CYP27B1   880000 perm   493 sec   (1785 perm/sec)   p_kst 3.699330e-01   p_cons 4.465909e-04   p_joint 1.442045e-03

Joint ci ratio: 1.094885e-01	ci left: 1.359443e-03	ci right 1.517988e-03	k: 1279	n:890000
Cons ci ratio: 1.959558e-01	ci left: 4.054077e-04	ci right 4.945253e-04	k: 399	n:890000
KS ci ratio: 5.422849e-03	ci left: 3.689238e-01	ci right 3.709310e-01	k: 329235	n:890000
CYP27B1   890000 perm   503 sec   (1771 perm/sec)   p_kst 3.699270e-01   p_cons 4.483146e-04   p_joint 1.437079e-03

Joint ci ratio: 1.088525e-01	ci left: 1.360549e-03	ci right 1.518243e-03	k: 1294	n:900000
Cons ci ratio: 1.949834e-01	ci left: 4.051301e-04	ci right 4.936922e-04	k: 403	n:900000
KS ci ratio: 5.392115e-03	ci left: 3.689746e-01	ci right 3.709706e-01	k: 332975	n:900000
CYP27B1   900000 perm   512 sec   (1757 perm/sec)   p_kst 3.699722e-01   p_cons 4.477778e-04   p_joint 1.437778e-03

Joint ci ratio: 1.084765e-01	ci left: 1.355219e-03	ci right 1.511718e-03	k: 1303	n:910000
Cons ci ratio: 1.942636e-01	ci left: 4.038142e-04	ci right 4.917242e-04	k: 406	n:910000
KS ci ratio: 5.362503e-03	ci left: 3.689717e-01	ci right 3.709566e-01	k: 336667	n:910000
CYP27B1   910000 perm   521 sec   (1746 perm/sec)   p_kst 3.699637e-01   p_cons 4.461538e-04   p_joint 1.431868e-03

Joint ci ratio: 1.091076e-01	ci left: 1.324627e-03	ci right 1.478540e-03	k: 1288	n:920000
Cons ci ratio: 1.926140e-01	ci left: 4.066652e-04	ci right 4.943561e-04	k: 413	n:920000
KS ci ratio: 5.333524e-03	ci left: 3.689557e-01	ci right 3.709299e-01	k: 340347	n:920000
CYP27B1   920000 perm   530 sec   (1735 perm/sec)   p_kst 3.699424e-01   p_cons 4.489130e-04   p_joint 1.400000e-03

Joint ci ratio: 9.456991e-02	ci left: 1.756857e-03	ci right 1.932290e-03	k: 1714	n:930000
Cons ci ratio: 1.916903e-01	ci left: 4.063866e-04	ci right 4.935481e-04	k: 417	n:930000
KS ci ratio: 5.304814e-03	ci left: 3.689574e-01	ci right 3.709209e-01	k: 344043	n:930000
CYP27B1   930000 perm   539 sec   (1724 perm/sec)   p_kst 3.699387e-01   p_cons 4.483871e-04   p_joint 1.843011e-03

Joint ci ratio: 9.872328e-02	ci left: 1.591785e-03	ci right 1.758119e-03	k: 1573	n:940000
Cons ci ratio: 1.901048e-01	ci left: 4.091543e-04	ci right 4.960998e-04	k: 424	n:940000
KS ci ratio: 5.275575e-03	ci left: 3.690462e-01	ci right 3.709993e-01	k: 347821	n:940000
CYP27B1   940000 perm   549 sec   (1711 perm/sec)   p_kst 3.700223e-01   p_cons 4.510638e-04   p_joint 1.673404e-03

Joint ci ratio: 9.810181e-02	ci left: 1.595564e-03	ci right 1.761183e-03	k: 1593	n:950000
Cons ci ratio: 1.887768e-01	ci left: 4.108637e-04	ci right 4.974927e-04	k: 430	n:950000
KS ci ratio: 5.247691e-03	ci left: 3.690553e-01	ci right 3.709981e-01	k: 351525	n:950000
CYP27B1   950000 perm   559 sec   (1700 perm/sec)   p_kst 3.700263e-01   p_cons 4.526316e-04   p_joint 1.676842e-03

Joint ci ratio: 1.030088e-01	ci left: 1.428645e-03	ci right 1.584804e-03	k: 1445	n:960000
Cons ci ratio: 1.881234e-01	ci left: 4.095615e-04	ci right 4.955827e-04	k: 433	n:960000
KS ci ratio: 5.220605e-03	ci left: 3.690320e-01	ci right 3.709646e-01	k: 355198	n:960000
CYP27B1   960000 perm   568 sec   (1690 perm/sec)   p_kst 3.699979e-01   p_cons 4.510417e-04   p_joint 1.505208e-03

Joint ci ratio: 1.052950e-01	ci left: 1.351661e-03	ci right 1.502888e-03	k: 1383	n:970000
Cons ci ratio: 1.876917e-01	ci left: 4.073040e-04	ci right 4.926324e-04	k: 435	n:970000
KS ci ratio: 5.194808e-03	ci left: 3.689309e-01	ci right 3.708534e-01	k: 358795	n:970000
CYP27B1   970000 perm   577 sec   (1680 perm/sec)   p_kst 3.698918e-01   p_cons 4.484536e-04   p_joint 1.425773e-03

Joint ci ratio: 1.048792e-01	ci left: 1.348798e-03	ci right 1.499072e-03	k: 1394	n:980000
Cons ci ratio: 1.864132e-01	ci left: 4.089836e-04	ci right 4.940143e-04	k: 441	n:980000
KS ci ratio: 5.168145e-03	ci left: 3.689440e-01	ci right 3.708567e-01	k: 362502	n:980000
CYP27B1   980000 perm   587 sec   (1670 perm/sec)   p_kst 3.699000e-01   p_cons 4.500000e-04   p_joint 1.422449e-03

Joint ci ratio: 1.048048e-01	ci left: 1.337140e-03	ci right 1.486003e-03	k: 1396	n:990000
Cons ci ratio: 1.857840e-01	ci left: 4.077416e-04	ci right 4.921956e-04	k: 444	n:990000
KS ci ratio: 5.142178e-03	ci left: 3.689307e-01	ci right 3.708337e-01	k: 366183	n:990000
CYP27B1   990000 perm   596 sec   (1660 perm/sec)   p_kst 3.698818e-01   p_cons 4.484848e-04   p_joint 1.410101e-03

Joint ci ratio: 1.041727e-01	ci left: 1.340325e-03	ci right 1.488587e-03	k: 1413	n:1000000
Cons ci ratio: 1.853681e-01	ci left: 4.055712e-04	ci right 4.893665e-04	k: 446	n:1000000
KS ci ratio: 5.115808e-03	ci left: 3.689896e-01	ci right 3.708831e-01	k: 369936	n:1000000
CYP27B1   1000000 perm   607 sec   (1648 perm/sec)   p_kst 3.699360e-01   p_cons 4.460000e-04   p_joint 1.413000e-03

Joint ci ratio: 1.035519e-01	ci left: 1.343449e-03	ci right 1.491117e-03	k: 1430	n:1010000
Cons ci ratio: 1.847493e-01	ci left: 4.043883e-04	ci right 4.876291e-04	k: 449	n:1010000
KS ci ratio: 5.090228e-03	ci left: 3.690118e-01	ci right 3.708959e-01	k: 373653	n:1010000
CYP27B1   1010000 perm   616 sec   (1639 perm/sec)   p_kst 3.699535e-01   p_cons 4.445545e-04   p_joint 1.415842e-03

Joint ci ratio: 1.045450e-01	ci left: 1.304495e-03	ci right 1.449341e-03	k: 1403	n:1020000
Cons ci ratio: 1.837314e-01	ci left: 4.050996e-04	ci right 4.879762e-04	k: 454	n:1020000
KS ci ratio: 5.065348e-03	ci left: 3.690041e-01	ci right 3.708790e-01	k: 377340	n:1020000
CYP27B1   1020000 perm   626 sec   (1630 perm/sec)   p_kst 3.699412e-01   p_cons 4.450980e-04   p_joint 1.375490e-03

Joint ci ratio: 1.039176e-01	ci left: 1.307904e-03	ci right 1.452204e-03	k: 1420	n:1030000
Cons ci ratio: 1.827300e-01	ci left: 4.057984e-04	ci right 4.883153e-04	k: 459	n:1030000
KS ci ratio: 5.040389e-03	ci left: 3.690374e-01	ci right 3.709031e-01	k: 381069	n:1030000
CYP27B1   1030000 perm   636 sec   (1620 perm/sec)   p_kst 3.699699e-01   p_cons 4.456311e-04   p_joint 1.378641e-03

Joint ci ratio: 9.952599e-02	ci left: 1.415279e-03	ci right 1.564442e-03	k: 1548	n:1040000
Cons ci ratio: 1.819407e-01	ci left: 4.055671e-04	ci right 4.876415e-04	k: 463	n:1040000
KS ci ratio: 5.015784e-03	ci left: 3.690710e-01	ci right 3.709278e-01	k: 384799	n:1040000
CYP27B1   1040000 perm   646 sec   (1609 perm/sec)   p_kst 3.699990e-01   p_cons 4.451923e-04   p_joint 1.488462e-03

Joint ci ratio: 9.888938e-02	ci left: 1.420376e-03	ci right 1.569063e-03	k: 1568	n:1050000
Cons ci ratio: 1.807756e-01	ci left: 4.071594e-04	ci right 4.889707e-04	k: 469	n:1050000
KS ci ratio: 4.991526e-03	ci left: 3.691050e-01	ci right 3.709529e-01	k: 388530	n:1050000
CYP27B1   1050000 perm   657 sec   (1599 perm/sec)   p_kst 3.700286e-01   p_cons 4.466667e-04   p_joint 1.493333e-03

Joint ci ratio: 9.299195e-02	ci left: 1.595743e-03	ci right 1.752283e-03	k: 1773	n:1060000
Cons ci ratio: 1.802015e-01	ci left: 4.060206e-04	ci right 4.873157e-04	k: 472	n:1060000
KS ci ratio: 4.978864e-03	ci left: 3.680851e-01	ci right 3.699232e-01	k: 391144	n:1060000
CYP27B1   1060000 perm   667 sec   (1589 perm/sec)   p_kst 3.690038e-01   p_cons 4.452830e-04   p_joint 1.672642e-03

Joint ci ratio: 9.260135e-02	ci left: 1.594523e-03	ci right 1.750251e-03	k: 1788	n:1070000
Cons ci ratio: 1.798219e-01	ci left: 4.040109e-04	ci right 4.847147e-04	k: 474	n:1070000
KS ci ratio: 4.956320e-03	ci left: 3.680165e-01	ci right 3.698459e-01	k: 394756	n:1070000
CYP27B1   1070000 perm   678 sec   (1579 perm/sec)   p_kst 3.689308e-01   p_cons 4.429907e-04   p_joint 1.671028e-03

Joint ci ratio: 9.265396e-02	ci left: 1.577949e-03	ci right 1.732151e-03	k: 1786	n:1080000
Cons ci ratio: 1.786967e-01	ci left: 4.055764e-04	ci right 4.860311e-04	k: 480	n:1080000
KS ci ratio: 4.933952e-03	ci left: 3.679612e-01	ci right 3.697821e-01	k: 398381	n:1080000
CYP27B1   1080000 perm   688 sec   (1571 perm/sec)   p_kst 3.688713e-01   p_cons 4.444444e-04   p_joint 1.653704e-03

Joint ci ratio: 9.657728e-02	ci left: 1.436273e-03	ci right 1.582910e-03	k: 1644	n:1090000
Cons ci ratio: 1.783266e-01	ci left: 4.036084e-04	ci right 4.834889e-04	k: 482	n:1090000
KS ci ratio: 4.911429e-03	ci left: 3.679501e-01	ci right 3.697626e-01	k: 402053	n:1090000
CYP27B1   1090000 perm   698 sec   (1562 perm/sec)   p_kst 3.688560e-01   p_cons 4.422018e-04   p_joint 1.508257e-03

Joint ci ratio: 9.953004e-02	ci left: 1.338080e-03	ci right 1.479112e-03	k: 1548	n:1100000
Cons ci ratio: 1.779587e-01	ci left: 4.016763e-04	ci right 4.809928e-04	k: 484	n:1100000
KS ci ratio: 4.888619e-03	ci left: 3.679955e-01	ci right 3.697998e-01	k: 405787	n:1100000
CYP27B1   1100000 perm   709 sec   (1552 perm/sec)   p_kst 3.688973e-01   p_cons 4.400000e-04   p_joint 1.407273e-03

Joint ci ratio: 9.927428e-02	ci left: 1.333053e-03	ci right 1.473173e-03	k: 1556	n:1110000
Cons ci ratio: 1.768679e-01	ci left: 4.032230e-04	ci right 4.823047e-04	k: 490	n:1110000
KS ci ratio: 4.866407e-03	ci left: 3.680131e-01	ci right 3.698092e-01	k: 409491	n:1110000
CYP27B1   1110000 perm   719 sec   (1544 perm/sec)   p_kst 3.689108e-01   p_cons 4.414414e-04   p_joint 1.401802e-03

Joint ci ratio: 9.898882e-02	ci left: 1.328987e-03	ci right 1.468255e-03	k: 1565	n:1120000
Cons ci ratio: 1.757969e-01	ci left: 4.047435e-04	ci right 4.835917e-04	k: 496	n:1120000
KS ci ratio: 4.844839e-03	ci left: 3.679974e-01	ci right 3.697855e-01	k: 413158	n:1120000
CYP27B1   1120000 perm   730 sec   (1535 perm/sec)   p_kst 3.688911e-01   p_cons 4.428571e-04   p_joint 1.397321e-03

Joint ci ratio: 9.823846e-02	ci left: 1.337941e-03	ci right 1.477024e-03	k: 1589	n:1130000
Cons ci ratio: 1.750938e-01	ci left: 4.045461e-04	ci right 4.830073e-04	k: 500	n:1130000
KS ci ratio: 4.823252e-03	ci left: 3.680111e-01	ci right 3.697913e-01	k: 416858	n:1130000
CYP27B1   1130000 perm   741 sec   (1526 perm/sec)   p_kst 3.689009e-01   p_cons 4.424779e-04   p_joint 1.406195e-03

Joint ci ratio: 9.854990e-02	ci left: 1.317648e-03	ci right 1.455080e-03	k: 1579	n:1140000
Cons ci ratio: 1.743990e-01	ci left: 4.043527e-04	ci right 4.824324e-04	k: 504	n:1140000
KS ci ratio: 4.801735e-03	ci left: 3.680457e-01	ci right 3.698181e-01	k: 420582	n:1140000
CYP27B1   1140000 perm   752 sec   (1517 perm/sec)   p_kst 3.689316e-01   p_cons 4.421053e-04   p_joint 1.385088e-03

Joint ci ratio: 9.830160e-02	ci left: 1.312976e-03	ci right 1.449555e-03	k: 1587	n:1150000
Cons ci ratio: 1.733720e-01	ci left: 4.058270e-04	ci right 4.836816e-04	k: 510	n:1150000
KS ci ratio: 4.780306e-03	ci left: 3.680989e-01	ci right 3.698635e-01	k: 424328	n:1150000
CYP27B1   1150000 perm   763 sec   (1508 perm/sec)   p_kst 3.689809e-01   p_cons 4.434783e-04   p_joint 1.380000e-03

Joint ci ratio: 9.787111e-02	ci left: 1.313430e-03	ci right 1.449424e-03	k: 1601	n:1160000
Cons ci ratio: 1.720303e-01	ci left: 4.089270e-04	ci right 4.867062e-04	k: 518	n:1160000
KS ci ratio: 4.759673e-03	ci left: 3.681011e-01	ci right 3.698582e-01	k: 428016	n:1160000
CYP27B1   1160000 perm   773 sec   (1500 perm/sec)   p_kst 3.689793e-01   p_cons 4.465517e-04   p_joint 1.380172e-03

Joint ci ratio: 9.729563e-02	ci left: 1.318047e-03	ci right 1.453671e-03	k: 1620	n:1170000
Cons ci ratio: 1.715354e-01	ci left: 4.078857e-04	ci right 4.852206e-04	k: 521	n:1170000
KS ci ratio: 4.738548e-03	ci left: 3.681777e-01	ci right 3.699273e-01	k: 431791	n:1170000
CYP27B1   1170000 perm   785 sec   (1491 perm/sec)   p_kst 3.690521e-01   p_cons 4.452991e-04   p_joint 1.384615e-03

Joint ci ratio: 9.684851e-02	ci left: 1.319280e-03	ci right 1.454372e-03	k: 1635	n:1180000
Cons ci ratio: 1.708820e-01	ci left: 4.076736e-04	ci right 4.846435e-04	k: 525	n:1180000
KS ci ratio: 4.717675e-03	ci left: 3.682555e-01	ci right 3.699977e-01	k: 435569	n:1180000
CYP27B1   1180000 perm   795 sec   (1484 perm/sec)   p_kst 3.691263e-01   p_cons 4.449153e-04   p_joint 1.385593e-03

Joint ci ratio: 9.631992e-02	ci left: 1.322955e-03	ci right 1.457642e-03	k: 1653	n:1190000
Cons ci ratio: 1.699155e-01	ci left: 4.090748e-04	ci right 4.858277e-04	k: 531	n:1190000
KS ci ratio: 4.697381e-03	ci left: 3.683018e-01	ci right 3.700367e-01	k: 439311	n:1190000
CYP27B1   1190000 perm   807 sec   (1476 perm/sec)   p_kst 3.691689e-01   p_cons 4.462185e-04   p_joint 1.389076e-03

Joint ci ratio: 9.594365e-02	ci left: 1.322503e-03	ci right 1.456589e-03	k: 1666	n:1200000
Cons ci ratio: 1.691226e-01	ci left: 4.096557e-04	ci right 4.861224e-04	k: 536	n:1200000
KS ci ratio: 4.677489e-03	ci left: 3.683331e-01	ci right 3.700608e-01	k: 443036	n:1200000
CYP27B1   1200000 perm   817 sec   (1468 perm/sec)   p_kst 3.691967e-01   p_cons 4.466667e-04   p_joint 1.388333e-03

Joint ci ratio: 9.560025e-02	ci left: 1.321253e-03	ci right 1.454706e-03	k: 1678	n:1210000
Cons ci ratio: 1.677226e-01	ci left: 4.133947e-04	ci right 4.898560e-04	k: 545	n:1210000
KS ci ratio: 4.658583e-03	ci left: 3.682905e-01	ci right 3.700110e-01	k: 446672	n:1210000
CYP27B1   1210000 perm   828 sec   (1461 perm/sec)   p_kst 3.691504e-01   p_cons 4.504132e-04   p_joint 1.386777e-03

Joint ci ratio: 9.682109e-02	ci left: 1.276824e-03	ci right 1.407529e-03	k: 1636	n:1220000
Cons ci ratio: 1.674164e-01	ci left: 4.115768e-04	ci right 4.875489e-04	k: 547	n:1220000
KS ci ratio: 4.639684e-03	ci left: 3.682706e-01	ci right 3.699841e-01	k: 450335	n:1220000
CYP27B1   1220000 perm   839 sec   (1454 perm/sec)   p_kst 3.691270e-01   p_cons 4.483607e-04   p_joint 1.340984e-03

Joint ci ratio: 9.688090e-02	ci left: 1.264856e-03	ci right 1.394421e-03	k: 1634	n:1230000
Cons ci ratio: 1.666578e-01	ci left: 4.121258e-04	ci right 4.878199e-04	k: 552	n:1230000
KS ci ratio: 4.621102e-03	ci left: 3.682422e-01	ci right 3.699486e-01	k: 453987	n:1230000
CYP27B1   1230000 perm   850 sec   (1446 perm/sec)   p_kst 3.690951e-01   p_cons 4.487805e-04   p_joint 1.328455e-03

Joint ci ratio: 9.790608e-02	ci left: 1.227903e-03	ci right 1.355090e-03	k: 1600	n:1240000
Cons ci ratio: 1.663574e-01	ci left: 4.103478e-04	ci right 4.855659e-04	k: 554	n:1240000
KS ci ratio: 4.601984e-03	ci left: 3.682909e-01	ci right 3.699904e-01	k: 457734	n:1240000
CYP27B1   1240000 perm   862 sec   (1439 perm/sec)   p_kst 3.691403e-01   p_cons 4.467742e-04   p_joint 1.290323e-03

Joint ci ratio: 9.864973e-02	ci left: 1.199351e-03	ci right 1.324578e-03	k: 1576	n:1250000
Cons ci ratio: 1.660587e-01	ci left: 4.085985e-04	ci right 4.833479e-04	k: 556	n:1250000
KS ci ratio: 4.584393e-03	ci left: 3.682076e-01	ci right 3.699002e-01	k: 461317	n:1250000
CYP27B1   1250000 perm   874 sec   (1430 perm/sec)   p_kst 3.690536e-01   p_cons 4.448000e-04   p_joint 1.260800e-03

Joint ci ratio: 9.824561e-02	ci left: 1.199896e-03	ci right 1.324637e-03	k: 1589	n:1260000
Cons ci ratio: 1.656134e-01	ci left: 4.076378e-04	ci right 4.819915e-04	k: 559	n:1260000
KS ci ratio: 4.565897e-03	ci left: 3.682383e-01	ci right 3.699242e-01	k: 465042	n:1260000
CYP27B1   1260000 perm   886 sec   (1422 perm/sec)   p_kst 3.690810e-01   p_cons 4.436508e-04   p_joint 1.261111e-03

Joint ci ratio: 9.048580e-02	ci left: 1.408808e-03	ci right 1.543089e-03	k: 1873	n:1270000
Cons ci ratio: 1.642981e-01	ci left: 4.112221e-04	ci right 4.855751e-04	k: 568	n:1270000
KS ci ratio: 4.548445e-03	ci left: 3.681843e-01	ci right 3.698635e-01	k: 468660	n:1270000
CYP27B1   1270000 perm   899 sec   (1413 perm/sec)   p_kst 3.690236e-01   p_cons 4.472441e-04   p_joint 1.474803e-03

Joint ci ratio: 9.070471e-02	ci left: 1.390929e-03	ci right 1.523843e-03	k: 1864	n:1280000
Cons ci ratio: 1.637236e-01	ci left: 4.110062e-04	ci right 4.850348e-04	k: 572	n:1280000
KS ci ratio: 4.530348e-03	ci left: 3.682179e-01	ci right 3.698905e-01	k: 472389	n:1280000
CYP27B1   1280000 perm   910 sec   (1406 perm/sec)   p_kst 3.690539e-01   p_cons 4.468750e-04   p_joint 1.456250e-03

Joint ci ratio: 9.036619e-02	ci left: 1.390753e-03	ci right 1.523129e-03	k: 1878	n:1290000
Cons ci ratio: 1.630139e-01	ci left: 4.115376e-04	ci right 4.853091e-04	k: 577	n:1290000
KS ci ratio: 4.512781e-03	ci left: 3.682184e-01	ci right 3.698846e-01	k: 476076	n:1290000
CYP27B1   1290000 perm   923 sec   (1398 perm/sec)   p_kst 3.690512e-01   p_cons 4.472868e-04   p_joint 1.455814e-03

Joint ci ratio: 8.993632e-02	ci left: 1.393589e-03	ci right 1.525571e-03	k: 1896	n:1300000
Cons ci ratio: 1.624528e-01	ci left: 4.113236e-04	ci right 4.847781e-04	k: 581	n:1300000
KS ci ratio: 4.495774e-03	ci left: 3.681820e-01	ci right 3.698417e-01	k: 479715	n:1300000
CYP27B1   1300000 perm   935 sec   (1391 perm/sec)   p_kst 3.690115e-01   p_cons 4.469231e-04   p_joint 1.458462e-03

Joint ci ratio: 8.972393e-02	ci left: 1.389667e-03	ci right 1.520950e-03	k: 1905	n:1310000
Cons ci ratio: 1.620358e-01	ci left: 4.103808e-04	ci right 4.834605e-04	k: 584	n:1310000
KS ci ratio: 4.478531e-03	ci left: 3.681904e-01	ci right 3.698438e-01	k: 483412	n:1310000
CYP27B1   1310000 perm   947 sec   (1384 perm/sec)   p_kst 3.690168e-01   p_cons 4.458015e-04   p_joint 1.454198e-03

Joint ci ratio: 9.109889e-02	ci left: 1.336932e-03	ci right 1.465271e-03	k: 1848	n:1320000
Cons ci ratio: 1.613477e-01	ci left: 4.109064e-04	ci right 4.837389e-04	k: 589	n:1320000
KS ci ratio: 4.461616e-03	ci left: 3.681851e-01	ci right 3.698322e-01	k: 487091	n:1320000
CYP27B1   1320000 perm   958 sec   (1377 perm/sec)   p_kst 3.690083e-01   p_cons 4.462121e-04   p_joint 1.400000e-03

Joint ci ratio: 9.073157e-02	ci left: 1.337902e-03	ci right 1.465789e-03	k: 1863	n:1330000
Cons ci ratio: 1.610751e-01	ci left: 4.092600e-04	ci right 4.816662e-04	k: 591	n:1330000
KS ci ratio: 4.444632e-03	ci left: 3.682069e-01	ci right 3.698478e-01	k: 490806	n:1330000
CYP27B1   1330000 perm   971 sec   (1370 perm/sec)   p_kst 3.690271e-01   p_cons 4.443609e-04   p_joint 1.400752e-03

Joint ci ratio: 9.177328e-02	ci left: 1.297288e-03	ci right 1.422793e-03	k: 1821	n:1340000
Cons ci ratio: 1.606686e-01	ci left: 4.083545e-04	ci right 4.804005e-04	k: 594	n:1340000
KS ci ratio: 4.428125e-03	ci left: 3.681986e-01	ci right 3.698333e-01	k: 494481	n:1340000
CYP27B1   1340000 perm   983 sec   (1363 perm/sec)   p_kst 3.690157e-01   p_cons 4.432836e-04   p_joint 1.358955e-03

Joint ci ratio: 9.152259e-02	ci left: 1.294916e-03	ci right 1.419831e-03	k: 1831	n:1350000
Cons ci ratio: 1.601313e-01	ci left: 4.081736e-04	ci right 4.799238e-04	k: 598	n:1350000
KS ci ratio: 4.411955e-03	ci left: 3.681741e-01	ci right 3.698028e-01	k: 498134	n:1350000
CYP27B1   1350000 perm   995 sec   (1357 perm/sec)   p_kst 3.689881e-01   p_cons 4.429630e-04   p_joint 1.356296e-03

Joint ci ratio: 9.122436e-02	ci left: 1.294017e-03	ci right 1.418417e-03	k: 1843	n:1360000
Cons ci ratio: 1.590723e-01	ci left: 4.108198e-04	ci right 4.825120e-04	k: 606	n:1360000
KS ci ratio: 4.395412e-03	ci left: 3.682080e-01	ci right 3.698307e-01	k: 501866	n:1360000
CYP27B1   1360000 perm   1007 sec   (1350 perm/sec)   p_kst 3.690191e-01   p_cons 4.455882e-04   p_joint 1.355147e-03

Joint ci ratio: 9.105192e-02	ci left: 1.289564e-03	ci right 1.413289e-03	k: 1850	n:1370000
Cons ci ratio: 1.584212e-01	ci left: 4.113258e-04	ci right 4.827845e-04	k: 611	n:1370000
KS ci ratio: 4.379755e-03	ci left: 3.681671e-01	ci right 3.697838e-01	k: 505496	n:1370000
CYP27B1   1370000 perm   1020 sec   (1344 perm/sec)   p_kst 3.689752e-01   p_cons 4.459854e-04   p_joint 1.350365e-03

Joint ci ratio: 9.632915e-02	ci left: 1.140804e-03	ci right 1.256958e-03	k: 1653	n:1380000
Cons ci ratio: 1.581631e-01	ci left: 4.097370e-04	ci right 4.807927e-04	k: 613	n:1380000
KS ci ratio: 4.363984e-03	ci left: 3.681564e-01	ci right 3.697673e-01	k: 509167	n:1380000
CYP27B1   1380000 perm   1032 sec   (1337 perm/sec)   p_kst 3.689616e-01   p_cons 4.442029e-04   p_joint 1.197826e-03

Joint ci ratio: 9.601046e-02	ci left: 1.140320e-03	ci right 1.256019e-03	k: 1664	n:1390000
Cons ci ratio: 1.575230e-01	ci left: 4.102443e-04	ci right 4.810729e-04	k: 618	n:1390000
KS ci ratio: 4.348168e-03	ci left: 3.681690e-01	ci right 3.697740e-01	k: 512870	n:1390000
CYP27B1   1390000 perm   1047 sec   (1328 perm/sec)   p_kst 3.689712e-01   p_cons 4.446043e-04   p_joint 1.197122e-03

Joint ci ratio: 9.583813e-02	ci left: 1.136358e-03	ci right 1.251436e-03	k: 1670	n:1400000
Cons ci ratio: 1.568906e-01	ci left: 4.107450e-04	ci right 4.813484e-04	k: 623	n:1400000
KS ci ratio: 4.332610e-03	ci left: 3.681721e-01	ci right 3.697713e-01	k: 516560	n:1400000
CYP27B1   1400000 perm   1061 sec   (1320 perm/sec)   p_kst 3.689714e-01   p_cons 4.450000e-04   p_joint 1.192857e-03

Joint ci ratio: 9.560967e-02	ci left: 1.133836e-03	ci right 1.248370e-03	k: 1678	n:1410000
Cons ci ratio: 1.565149e-01	ci left: 4.098761e-04	ci right 4.801456e-04	k: 626	n:1410000
KS ci ratio: 4.317611e-03	ci left: 3.681326e-01	ci right 3.697261e-01	k: 520190	n:1410000
CYP27B1   1410000 perm   1073 sec   (1314 perm/sec)   p_kst 3.689291e-01   p_cons 4.439716e-04   p_joint 1.190071e-03

Joint ci ratio: 9.555311e-02	ci left: 1.127226e-03	ci right 1.241021e-03	k: 1680	n:1420000
Cons ci ratio: 1.557712e-01	ci left: 4.110499e-04	ci right 4.811546e-04	k: 632	n:1420000
KS ci ratio: 4.302754e-03	ci left: 3.680950e-01	ci right 3.696830e-01	k: 523822	n:1420000
CYP27B1   1420000 perm   1086 sec   (1308 perm/sec)   p_kst 3.688887e-01   p_cons 4.450704e-04   p_joint 1.183099e-03

Joint ci ratio: 9.724786e-02	ci left: 1.079760e-03	ci right 1.190807e-03	k: 1622	n:1430000
Cons ci ratio: 1.552814e-01	ci left: 4.108638e-04	ci right 4.806959e-04	k: 636	n:1430000
KS ci ratio: 4.287850e-03	ci left: 3.680797e-01	ci right 3.696621e-01	k: 527485	n:1430000
CYP27B1   1430000 perm   1098 sec   (1302 perm/sec)   p_kst 3.688706e-01   p_cons 4.447552e-04   p_joint 1.134266e-03

Joint ci ratio: 9.887789e-02	ci left: 1.036358e-03	ci right 1.144831e-03	k: 1569	n:1440000
Cons ci ratio: 1.550383e-01	ci left: 4.093455e-04	ci right 4.788005e-04	k: 638	n:1440000
KS ci ratio: 4.273182e-03	ci left: 3.680556e-01	ci right 3.696324e-01	k: 531135	n:1440000
CYP27B1   1440000 perm   1111 sec   (1296 perm/sec)   p_kst 3.688438e-01   p_cons 4.430556e-04   p_joint 1.089583e-03

Joint ci ratio: 9.847098e-02	ci left: 1.037955e-03	ci right 1.146123e-03	k: 1582	n:1450000
Cons ci ratio: 1.546758e-01	ci left: 4.085112e-04	ci right 4.776476e-04	k: 641	n:1450000
KS ci ratio: 4.258690e-03	ci left: 3.680291e-01	ci right 3.696004e-01	k: 534781	n:1450000
CYP27B1   1450000 perm   1124 sec   (1290 perm/sec)   p_kst 3.688145e-01   p_cons 4.420690e-04   p_joint 1.091034e-03

Joint ci ratio: 9.957953e-02	ci left: 1.007466e-03	ci right 1.113707e-03	k: 1547	n:1460000
Cons ci ratio: 1.541962e-01	ci left: 4.083470e-04	ci right 4.772215e-04	k: 645	n:1460000
KS ci ratio: 4.243862e-03	ci left: 3.680556e-01	ci right 3.696216e-01	k: 538504	n:1460000
CYP27B1   1460000 perm   1137 sec   (1284 perm/sec)   p_kst 3.688384e-01   p_cons 4.417808e-04   p_joint 1.059589e-03

Joint ci ratio: 9.929137e-02	ci left: 1.006583e-03	ci right 1.112406e-03	k: 1556	n:1470000
Cons ci ratio: 1.538394e-01	ci left: 4.075313e-04	ci right 4.760945e-04	k: 648	n:1470000
KS ci ratio: 4.229442e-03	ci left: 3.680540e-01	ci right 3.696146e-01	k: 542186	n:1470000
CYP27B1   1470000 perm   1150 sec   (1278 perm/sec)   p_kst 3.688340e-01   p_cons 4.408163e-04   p_joint 1.058503e-03

Joint ci ratio: 9.954806e-02	ci left: 9.945100e-04	ci right 1.099350e-03	k: 1548	n:1480000
Cons ci ratio: 1.533676e-01	ci left: 4.073765e-04	ci right 4.756842e-04	k: 652	n:1480000
KS ci ratio: 4.215119e-03	ci left: 3.680577e-01	ci right 3.696131e-01	k: 545876	n:1480000
CYP27B1   1480000 perm   1163 sec   (1272 perm/sec)   p_kst 3.688351e-01   p_cons 4.405405e-04   p_joint 1.045946e-03

Joint ci ratio: 9.929207e-02	ci left: 9.930710e-04	ci right 1.097475e-03	k: 1556	n:1490000
Cons ci ratio: 1.525519e-01	ci left: 4.091607e-04	ci right 4.773693e-04	k: 659	n:1490000
KS ci ratio: 4.200989e-03	ci left: 3.680561e-01	ci right 3.696062e-01	k: 549558	n:1490000
CYP27B1   1490000 perm   1177 sec   (1266 perm/sec)   p_kst 3.688309e-01   p_cons 4.422819e-04   p_joint 1.044295e-03

Joint ci ratio: 9.881707e-02	ci left: 9.962029e-04	ci right 1.100406e-03	k: 1571	n:1500000
Cons ci ratio: 1.522065e-01	ci left: 4.083567e-04	ci right 4.762631e-04	k: 662	n:1500000
KS ci ratio: 4.187084e-03	ci left: 3.680451e-01	ci right 3.695900e-01	k: 553226	n:1500000
CYP27B1   1500000 perm   1190 sec   (1260 perm/sec)   p_kst 3.688173e-01   p_cons 4.413333e-04   p_joint 1.047333e-03

Joint ci ratio: 9.816323e-02	ci left: 1.003170e-03	ci right 1.107368e-03	k: 1592	n:1510000
Cons ci ratio: 1.509590e-01	ci left: 4.126609e-04	ci right 4.806698e-04	k: 673	n:1510000
KS ci ratio: 4.173020e-03	ci left: 3.680674e-01	ci right 3.696072e-01	k: 556944	n:1510000
CYP27B1   1510000 perm   1204 sec   (1254 perm/sec)   p_kst 3.688371e-01   p_cons 4.456954e-04   p_joint 1.054305e-03

Joint ci ratio: 9.782604e-02	ci left: 1.003630e-03	ci right 1.107497e-03	k: 1603	n:1520000
Cons ci ratio: 1.505131e-01	ci left: 4.124783e-04	ci right 4.802382e-04	k: 677	n:1520000
KS ci ratio: 4.159020e-03	ci left: 3.680980e-01	ci right 3.696328e-01	k: 560675	n:1520000
CYP27B1   1520000 perm   1217 sec   (1249 perm/sec)   p_kst 3.688651e-01   p_cons 4.453947e-04   p_joint 1.054605e-03

Joint ci ratio: 9.510515e-02	ci left: 1.056390e-03	ci right 1.162506e-03	k: 1696	n:1530000
Cons ci ratio: 1.497419e-01	ci left: 4.141857e-04	ci right 4.818463e-04	k: 684	n:1530000
KS ci ratio: 4.145666e-03	ci left: 3.680713e-01	ci right 3.696010e-01	k: 564319	n:1530000
CYP27B1   1530000 perm   1231 sec   (1243 perm/sec)   p_kst 3.688359e-01   p_cons 4.470588e-04   p_joint 1.108497e-03

Joint ci ratio: 9.671640e-02	ci left: 1.014038e-03	ci right 1.117723e-03	k: 1640	n:1540000
Cons ci ratio: 1.494152e-01	ci left: 4.133713e-04	ci right 4.807383e-04	k: 687	n:1540000
KS ci ratio: 4.132618e-03	ci left: 3.680249e-01	ci right 3.695496e-01	k: 567932	n:1540000
CYP27B1   1540000 perm   1245 sec   (1237 perm/sec)   p_kst 3.687870e-01   p_cons 4.461039e-04   p_joint 1.064935e-03

Joint ci ratio: 9.636466e-02	ci left: 1.015051e-03	ci right 1.118441e-03	k: 1652	n:1550000
Cons ci ratio: 1.486607e-01	ci left: 4.150522e-04	ci right 4.823212e-04	k: 694	n:1550000
KS ci ratio: 4.119710e-03	ci left: 3.679772e-01	ci right 3.694969e-01	k: 571542	n:1550000
CYP27B1   1550000 perm   1258 sec   (1232 perm/sec)   p_kst 3.687368e-01   p_cons 4.477419e-04   p_joint 1.065806e-03

Joint ci ratio: 9.604561e-02	ci left: 1.015426e-03	ci right 1.118492e-03	k: 1663	n:1560000
Cons ci ratio: 1.483409e-01	ci left: 4.142432e-04	ci right 4.812239e-04	k: 697	n:1560000
KS ci ratio: 4.107081e-03	ci left: 3.679121e-01	ci right 3.694269e-01	k: 575124	n:1560000
CYP27B1   1560000 perm   1272 sec   (1226 perm/sec)   p_kst 3.686692e-01   p_cons 4.467949e-04   p_joint 1.066026e-03

Joint ci ratio: 9.555853e-02	ci left: 1.019527e-03	ci right 1.122456e-03	k: 1680	n:1570000
Cons ci ratio: 1.478124e-01	ci left: 4.146714e-04	ci right 4.814614e-04	k: 702	n:1570000
KS ci ratio: 4.094247e-03	ci left: 3.678841e-01	ci right 3.693941e-01	k: 578763	n:1570000
CYP27B1   1570000 perm   1286 sec   (1221 perm/sec)   p_kst 3.686389e-01   p_cons 4.471338e-04   p_joint 1.070064e-03

Joint ci ratio: 9.524739e-02	ci left: 1.019870e-03	ci right 1.122479e-03	k: 1691	n:1580000
Cons ci ratio: 1.477076e-01	ci left: 4.126564e-04	ci right 4.790705e-04	k: 703	n:1580000
KS ci ratio: 4.081228e-03	ci left: 3.678913e-01	ci right 3.693965e-01	k: 582457	n:1580000
CYP27B1   1580000 perm   1300 sec   (1216 perm/sec)   p_kst 3.686437e-01   p_cons 4.449367e-04   p_joint 1.070253e-03

Joint ci ratio: 9.491138e-02	ci left: 1.020823e-03	ci right 1.123146e-03	k: 1703	n:1590000
Cons ci ratio: 1.471858e-01	ci left: 4.130897e-04	ci right 4.793180e-04	k: 708	n:1590000
KS ci ratio: 4.068293e-03	ci left: 3.679029e-01	ci right 3.694033e-01	k: 586158	n:1590000
CYP27B1   1590000 perm   1314 sec   (1210 perm/sec)   p_kst 3.686528e-01   p_cons 4.452830e-04   p_joint 1.071069e-03

Joint ci ratio: 9.463413e-02	ci left: 1.020545e-03	ci right 1.122525e-03	k: 1713	n:1600000
Cons ci ratio: 1.468755e-01	ci left: 4.123139e-04	ci right 4.782663e-04	k: 711	n:1600000
KS ci ratio: 4.055160e-03	ci left: 3.679511e-01	ci right 3.694469e-01	k: 589918	n:1600000
CYP27B1   1600000 perm   1328 sec   (1205 perm/sec)   p_kst 3.686988e-01   p_cons 4.443750e-04   p_joint 1.070625e-03

Joint ci ratio: 9.411369e-02	ci left: 1.025729e-03	ci right 1.127632e-03	k: 1732	n:1610000
Cons ci ratio: 1.460571e-01	ci left: 4.145398e-04	ci right 4.804465e-04	k: 719	n:1610000
KS ci ratio: 4.042876e-03	ci left: 3.679156e-01	ci right 3.694066e-01	k: 593544	n:1610000
CYP27B1   1610000 perm   1343 sec   (1199 perm/sec)   p_kst 3.686609e-01   p_cons 4.465839e-04   p_joint 1.075776e-03

Joint ci ratio: 8.287904e-02	ci left: 1.321848e-03	ci right 1.436737e-03	k: 2233	n:1620000
Cons ci ratio: 1.452522e-01	ci left: 4.167393e-04	ci right 4.825989e-04	k: 727	n:1620000
KS ci ratio: 4.030099e-03	ci left: 3.679502e-01	ci right 3.694367e-01	k: 597283	n:1620000
CYP27B1   1620000 perm   1357 sec   (1194 perm/sec)   p_kst 3.686932e-01   p_cons 4.487654e-04   p_joint 1.378395e-03

Joint ci ratio: 8.262055e-02	ci left: 1.322149e-03	ci right 1.436689e-03	k: 2247	n:1630000
Cons ci ratio: 1.450532e-01	ci left: 4.153650e-04	ci right 4.809097e-04	k: 729	n:1630000
KS ci ratio: 4.017685e-03	ci left: 3.679562e-01	ci right 3.694381e-01	k: 600976	n:1630000
CYP27B1   1630000 perm   1371 sec   (1189 perm/sec)   p_kst 3.686969e-01   p_cons 4.472393e-04   p_joint 1.378528e-03

Joint ci ratio: 8.234625e-02	ci left: 1.323045e-03	ci right 1.437264e-03	k: 2262	n:1640000
Cons ci ratio: 1.444606e-01	ci left: 4.163584e-04	ci right 4.817683e-04	k: 735	n:1640000
KS ci ratio: 4.005386e-03	ci left: 3.679622e-01	ci right 3.694395e-01	k: 604669	n:1640000
CYP27B1   1640000 perm   1386 sec   (1184 perm/sec)   p_kst 3.687006e-01   p_cons 4.481707e-04   p_joint 1.379268e-03

Joint ci ratio: 8.221935e-02	ci left: 1.319182e-03	ci right 1.432883e-03	k: 2269	n:1650000
Cons ci ratio: 1.437784e-01	ci left: 4.179244e-04	ci right 4.832437e-04	k: 742	n:1650000
KS ci ratio: 3.993511e-03	ci left: 3.679317e-01	ci right 3.694045e-01	k: 608302	n:1650000
CYP27B1   1650000 perm   1400 sec   (1179 perm/sec)   p_kst 3.686679e-01   p_cons 4.496970e-04   p_joint 1.375152e-03

Joint ci ratio: 8.193106e-02	ci left: 1.320676e-03	ci right 1.434087e-03	k: 2285	n:1660000
Cons ci ratio: 1.429153e-01	ci left: 4.206341e-04	ci right 4.859486e-04	k: 751	n:1660000
KS ci ratio: 3.981416e-03	ci left: 3.679395e-01	ci right 3.694079e-01	k: 611998	n:1660000
CYP27B1   1660000 perm   1414 sec   (1174 perm/sec)   p_kst 3.686735e-01   p_cons 4.524096e-04   p_joint 1.376506e-03

Joint ci ratio: 8.159256e-02	ci left: 1.323912e-03	ci right 1.437110e-03	k: 2304	n:1670000
Cons ci ratio: 1.428205e-01	ci left: 4.186927e-04	ci right 4.836589e-04	k: 752	n:1670000
KS ci ratio: 3.969716e-03	ci left: 3.679137e-01	ci right 3.693777e-01	k: 615638	n:1670000
CYP27B1   1670000 perm   1429 sec   (1169 perm/sec)   p_kst 3.686455e-01   p_cons 4.502994e-04   p_joint 1.379641e-03

Joint ci ratio: 8.117082e-02	ci left: 1.330027e-03	ci right 1.443132e-03	k: 2328	n:1680000
Cons ci ratio: 1.419744e-01	ci left: 4.213668e-04	ci right 4.863278e-04	k: 761	n:1680000
KS ci ratio: 3.957132e-03	ci left: 3.680043e-01	ci right 3.694640e-01	k: 619473	n:1680000
CYP27B1   1680000 perm   1444 sec   (1164 perm/sec)   p_kst 3.687339e-01   p_cons 4.529762e-04   p_joint 1.385714e-03

Joint ci ratio: 8.124105e-02	ci left: 1.319838e-03	ci right 1.432178e-03	k: 2324	n:1690000
Cons ci ratio: 1.413266e-01	ci left: 4.228688e-04	ci right 4.877388e-04	k: 768	n:1690000
KS ci ratio: 3.945123e-03	ci left: 3.680400e-01	ci right 3.694954e-01	k: 623217	n:1690000
CYP27B1   1690000 perm   1458 sec   (1159 perm/sec)   p_kst 3.687675e-01   p_cons 4.544379e-04   p_joint 1.375148e-03

Joint ci ratio: 8.101489e-02	ci left: 1.319566e-03	ci right 1.431555e-03	k: 2337	n:1700000
Cons ci ratio: 1.408694e-01	ci left: 4.232187e-04	ci right 4.879147e-04	k: 773	n:1700000
KS ci ratio: 3.934008e-03	ci left: 3.679823e-01	ci right 3.694334e-01	k: 626803	n:1700000
CYP27B1   1700000 perm   1473 sec   (1154 perm/sec)   p_kst 3.687076e-01   p_cons 4.547059e-04   p_joint 1.374706e-03

Joint ci ratio: 7.909070e-02	ci left: 1.377756e-03	ci right 1.491779e-03	k: 2452	n:1710000
Cons ci ratio: 1.404165e-01	ci left: 4.235648e-04	ci right 4.880882e-04	k: 778	n:1710000
KS ci ratio: 3.922819e-03	ci left: 3.679453e-01	ci right 3.693920e-01	k: 630423	n:1710000
CYP27B1   1710000 perm   1488 sec   (1149 perm/sec)   p_kst 3.686684e-01   p_cons 4.549708e-04   p_joint 1.433918e-03

Joint ci ratio: 7.893008e-02	ci left: 1.375445e-03	ci right 1.489035e-03	k: 2462	n:1720000
Cons ci ratio: 1.398788e-01	ci left: 4.244683e-04	ci right 4.888611e-04	k: 784	n:1720000
KS ci ratio: 3.911852e-03	ci left: 3.678935e-01	ci right 3.693360e-01	k: 634017	n:1720000
CYP27B1   1720000 perm   1503 sec   (1144 perm/sec)   p_kst 3.686145e-01   p_cons 4.558140e-04   p_joint 1.431395e-03

Joint ci ratio: 7.870672e-02	ci left: 1.375428e-03	ci right 1.488680e-03	k: 2476	n:1730000
Cons ci ratio: 1.393472e-01	ci left: 4.253618e-04	ci right 4.896245e-04	k: 790	n:1730000
KS ci ratio: 3.900661e-03	ci left: 3.678799e-01	ci right 3.693182e-01	k: 637676	n:1730000
CYP27B1   1730000 perm   1518 sec   (1140 perm/sec)   p_kst 3.685988e-01   p_cons 4.566474e-04   p_joint 1.431214e-03

Joint ci ratio: 7.843795e-02	ci left: 1.377101e-03	ci right 1.490086e-03	k: 2493	n:1740000
Cons ci ratio: 1.389963e-01	ci left: 4.251360e-04	ci right 4.891894e-04	k: 794	n:1740000
KS ci ratio: 3.889479e-03	ci left: 3.678768e-01	ci right 3.693110e-01	k: 641353	n:1740000
CYP27B1   1740000 perm   1533 sec   (1135 perm/sec)   p_kst 3.685937e-01   p_cons 4.563218e-04   p_joint 1.432759e-03

Joint ci ratio: 7.818751e-02	ci left: 1.378196e-03	ci right 1.490893e-03	k: 2509	n:1750000
Cons ci ratio: 1.384746e-01	ci left: 4.260162e-04	ci right 4.899416e-04	k: 800	n:1750000
KS ci ratio: 3.878450e-03	ci left: 3.678669e-01	ci right 3.692970e-01	k: 645018	n:1750000
CYP27B1   1750000 perm   1548 sec   (1130 perm/sec)   p_kst 3.685817e-01   p_cons 4.571429e-04   p_joint 1.433714e-03

Joint ci ratio: 7.723833e-02	ci left: 1.404908e-03	ci right 1.518333e-03	k: 2571	n:1760000
Cons ci ratio: 1.380445e-01	ci left: 4.263383e-04	ci right 4.900969e-04	k: 805	n:1760000
KS ci ratio: 3.867184e-03	ci left: 3.678969e-01	ci right 3.693229e-01	k: 648753	n:1760000
CYP27B1   1760000 perm   1563 sec   (1126 perm/sec)   p_kst 3.686097e-01   p_cons 4.573864e-04   p_joint 1.460795e-03

Joint ci ratio: 7.699918e-02	ci left: 1.405836e-03	ci right 1.518969e-03	k: 2587	n:1770000
Cons ci ratio: 1.375334e-01	ci left: 4.272026e-04	ci right 4.908346e-04	k: 811	n:1770000
KS ci ratio: 3.855926e-03	ci left: 3.679372e-01	ci right 3.693592e-01	k: 652507	n:1770000
CYP27B1   1770000 perm   1578 sec   (1121 perm/sec)   p_kst 3.686480e-01   p_cons 4.581921e-04   p_joint 1.461582e-03

Joint ci ratio: 7.689542e-02	ci left: 1.401795e-03	ci right 1.514444e-03	k: 2594	n:1780000
Cons ci ratio: 1.371119e-01	ci left: 4.275151e-04	ci right 4.909825e-04	k: 816	n:1780000
KS ci ratio: 3.844669e-03	ci left: 3.679889e-01	ci right 3.694070e-01	k: 656282	n:1780000
CYP27B1   1780000 perm   1594 sec   (1117 perm/sec)   p_kst 3.686978e-01   p_cons 4.584270e-04   p_joint 1.457303e-03

Joint ci ratio: 7.674778e-02	ci left: 1.399443e-03	ci right 1.511677e-03	k: 2604	n:1790000
Cons ci ratio: 1.368609e-01	ci left: 4.267453e-04	ci right 4.899730e-04	k: 819	n:1790000
KS ci ratio: 3.834057e-03	ci left: 3.679736e-01	ci right 3.693877e-01	k: 659938	n:1790000
CYP27B1   1790000 perm   1609 sec   (1113 perm/sec)   p_kst 3.686804e-01   p_cons 4.575419e-04   p_joint 1.454749e-03

Joint ci ratio: 7.652776e-02	ci left: 1.399842e-03	ci right 1.511772e-03	k: 2619	n:1800000
Cons ci ratio: 1.365284e-01	ci left: 4.265207e-04	ci right 4.895491e-04	k: 823	n:1800000
KS ci ratio: 3.823396e-03	ci left: 3.679751e-01	ci right 3.693853e-01	k: 663624	n:1800000
CYP27B1   1800000 perm   1624 sec   (1108 perm/sec)   p_kst 3.686800e-01   p_cons 4.572222e-04   p_joint 1.455000e-03

Joint ci ratio: 7.517528e-02	ci left: 1.443600e-03	ci right 1.556899e-03	k: 2714	n:1810000
Cons ci ratio: 1.361160e-01	ci left: 4.268324e-04	ci right 4.897010e-04	k: 828	n:1810000
KS ci ratio: 3.813022e-03	ci left: 3.679523e-01	ci right 3.693586e-01	k: 667266	n:1810000
CYP27B1   1810000 perm   1640 sec   (1104 perm/sec)   p_kst 3.686552e-01   p_cons 4.574586e-04   p_joint 1.499448e-03

Joint ci ratio: 7.496847e-02	ci left: 1.443755e-03	ci right 1.556741e-03	k: 2729	n:1820000
Cons ci ratio: 1.357074e-01	ci left: 4.271411e-04	ci right 4.898509e-04	k: 833	n:1820000
KS ci ratio: 3.802773e-03	ci left: 3.679249e-01	ci right 3.693272e-01	k: 670899	n:1820000
CYP27B1   1820000 perm   1656 sec   (1099 perm/sec)   p_kst 3.686258e-01   p_cons 4.576923e-04   p_joint 1.499451e-03

Joint ci ratio: 7.291134e-02	ci left: 1.519538e-03	ci right 1.635054e-03	k: 2885	n:1830000
Cons ci ratio: 1.353831e-01	ci left: 4.269186e-04	ci right 4.894340e-04	k: 837	n:1830000
KS ci ratio: 3.792272e-03	ci left: 3.679387e-01	ci right 3.693372e-01	k: 674607	n:1830000
CYP27B1   1830000 perm   1671 sec   (1095 perm/sec)   p_kst 3.686377e-01   p_cons 4.573770e-04   p_joint 1.576503e-03

Joint ci ratio: 7.277288e-02	ci left: 1.517149e-03	ci right 1.632255e-03	k: 2896	n:1840000
Cons ci ratio: 1.352219e-01	ci left: 4.256486e-04	ci right 4.878978e-04	k: 839	n:1840000
KS ci ratio: 3.782321e-03	ci left: 3.678953e-01	ci right 3.692899e-01	k: 678210	n:1840000
CYP27B1   1840000 perm   1688 sec   (1090 perm/sec)   p_kst 3.685924e-01   p_cons 4.559783e-04   p_joint 1.573913e-03

Joint ci ratio: 7.253534e-02	ci left: 1.519032e-03	ci right 1.633889e-03	k: 2915	n:1850000
Cons ci ratio: 1.346619e-01	ci left: 4.270038e-04	ci right 4.891719e-04	k: 846	n:1850000
KS ci ratio: 3.771528e-03	ci left: 3.679658e-01	ci right 3.693568e-01	k: 682023	n:1850000
CYP27B1   1850000 perm   1704 sec   (1086 perm/sec)   p_kst 3.686611e-01   p_cons 4.572973e-04   p_joint 1.575676e-03

Joint ci ratio: 7.233715e-02	ci left: 1.519312e-03	ci right 1.633862e-03	k: 2931	n:1860000
Cons ci ratio: 1.342662e-01	ci left: 4.273059e-04	ci right 4.893205e-04	k: 851	n:1860000
KS ci ratio: 3.761405e-03	ci left: 3.679641e-01	ci right 3.693513e-01	k: 685703	n:1860000
CYP27B1   1860000 perm   1721 sec   (1081 perm/sec)   p_kst 3.686575e-01   p_cons 4.575269e-04   p_joint 1.575806e-03

Joint ci ratio: 7.300129e-02	ci left: 1.483359e-03	ci right 1.596269e-03	k: 2878	n:1870000
Cons ci ratio: 1.340305e-01	ci left: 4.265712e-04	ci right 4.883619e-04	k: 854	n:1870000
KS ci ratio: 3.751345e-03	ci left: 3.679646e-01	ci right 3.693481e-01	k: 689387	n:1870000
CYP27B1   1870000 perm   1737 sec   (1077 perm/sec)   p_kst 3.686561e-01   p_cons 4.566845e-04   p_joint 1.539037e-03

Joint ci ratio: 7.281187e-02	ci left: 1.483302e-03	ci right 1.595902e-03	k: 2893	n:1880000
Cons ci ratio: 1.337181e-01	ci left: 4.263586e-04	ci right 4.879631e-04	k: 858	n:1880000
KS ci ratio: 3.741379e-03	ci left: 3.679635e-01	ci right 3.693433e-01	k: 693068	n:1880000
CYP27B1   1880000 perm   1753 sec   (1072 perm/sec)   p_kst 3.686532e-01   p_cons 4.563830e-04   p_joint 1.538830e-03

Joint ci ratio: 7.343747e-02	ci left: 1.450001e-03	ci right 1.561059e-03	k: 2844	n:1890000
Cons ci ratio: 1.335628e-01	ci left: 4.251256e-04	ci right 4.864749e-04	k: 860	n:1890000
KS ci ratio: 3.731546e-03	ci left: 3.679555e-01	ci right 3.693316e-01	k: 696736	n:1890000
CYP27B1   1890000 perm   1770 sec   (1068 perm/sec)   p_kst 3.686434e-01   p_cons 4.550265e-04   p_joint 1.504762e-03

Joint ci ratio: 7.319339e-02	ci left: 1.452186e-03	ci right 1.563027e-03	k: 2863	n:1900000
Cons ci ratio: 1.333307e-01	ci left: 4.244143e-04	ci right 4.855462e-04	k: 863	n:1900000
KS ci ratio: 3.721501e-03	ci left: 3.679839e-01	ci right 3.693565e-01	k: 700473	n:1900000
CYP27B1   1900000 perm   1786 sec   (1064 perm/sec)   p_kst 3.686700e-01   p_cons 4.542105e-04   p_joint 1.506842e-03

Joint ci ratio: 7.351573e-02	ci left: 1.431733e-03	ci right 1.541515e-03	k: 2838	n:1910000
Cons ci ratio: 1.329466e-01	ci left: 4.247228e-04	ci right 4.857090e-04	k: 868	n:1910000
KS ci ratio: 3.711669e-03	ci left: 3.679953e-01	ci right 3.693642e-01	k: 704178	n:1910000
CYP27B1   1910000 perm   1803 sec   (1060 perm/sec)   p_kst 3.686796e-01   p_cons 4.544503e-04   p_joint 1.485864e-03

Joint ci ratio: 7.325804e-02	ci left: 1.434502e-03	ci right 1.544094e-03	k: 2858	n:1920000
Cons ci ratio: 1.323387e-01	ci left: 4.265392e-04	ci right 4.874841e-04	k: 876	n:1920000
KS ci ratio: 3.702313e-03	ci left: 3.679566e-01	ci right 3.693219e-01	k: 707787	n:1920000
CYP27B1   1920000 perm   1819 sec   (1056 perm/sec)   p_kst 3.686391e-01   p_cons 4.562500e-04   p_joint 1.488542e-03

Joint ci ratio: 7.302845e-02	ci left: 1.436225e-03	ci right 1.545590e-03	k: 2876	n:1930000
Cons ci ratio: 1.318136e-01	ci left: 4.278362e-04	ci right 4.887049e-04	k: 883	n:1930000
KS ci ratio: 3.692929e-03	ci left: 3.679307e-01	ci right 3.692925e-01	k: 711420	n:1930000
CYP27B1   1930000 perm   1835 sec   (1052 perm/sec)   p_kst 3.686114e-01   p_cons 4.575130e-04   p_joint 1.490155e-03

Joint ci ratio: 7.288931e-02	ci left: 1.434389e-03	ci right 1.543397e-03	k: 2887	n:1940000
Cons ci ratio: 1.315906e-01	ci left: 4.271263e-04	ci right 4.877831e-04	k: 886	n:1940000
KS ci ratio: 3.683411e-03	ci left: 3.679309e-01	ci right 3.692891e-01	k: 715103	n:1940000
CYP27B1   1940000 perm   1852 sec   (1048 perm/sec)   p_kst 3.686098e-01   p_cons 4.567010e-04   p_joint 1.488144e-03

Joint ci ratio: 7.277611e-02	ci left: 1.431564e-03	ci right 1.540181e-03	k: 2896	n:1950000
Cons ci ratio: 1.314426e-01	ci left: 4.259278e-04	ci right 4.863411e-04	k: 888	n:1950000
KS ci ratio: 3.673902e-03	ci left: 3.679392e-01	ci right 3.692940e-01	k: 718802	n:1950000
CYP27B1   1950000 perm   1868 sec   (1044 perm/sec)   p_kst 3.686164e-01   p_cons 4.553846e-04   p_joint 1.485128e-03

Joint ci ratio: 7.265092e-02	ci left: 1.429269e-03	ci right 1.537518e-03	k: 2906	n:1960000
Cons ci ratio: 1.311479e-01	ci left: 4.257285e-04	ci right 4.859676e-04	k: 892	n:1960000
KS ci ratio: 3.664535e-03	ci left: 3.679388e-01	ci right 3.692901e-01	k: 722484	n:1960000
CYP27B1   1960000 perm   1885 sec   (1040 perm/sec)   p_kst 3.686143e-01   p_cons 4.551020e-04   p_joint 1.482653e-03

Joint ci ratio: 7.241458e-02	ci left: 1.431484e-03	ci right 1.539533e-03	k: 2925	n:1970000
Cons ci ratio: 1.307095e-01	ci left: 4.265134e-04	ci right 4.866461e-04	k: 898	n:1970000
KS ci ratio: 3.655669e-03	ci left: 3.678836e-01	ci right 3.692315e-01	k: 726058	n:1970000
CYP27B1   1970000 perm   1901 sec   (1036 perm/sec)   p_kst 3.685574e-01   p_cons 4.558376e-04   p_joint 1.484772e-03

Joint ci ratio: 7.222968e-02	ci left: 1.431693e-03	ci right 1.539470e-03	k: 2940	n:1980000
Cons ci ratio: 1.304920e-01	ci left: 4.258249e-04	ci right 4.857529e-04	k: 901	n:1980000
KS ci ratio: 3.646460e-03	ci left: 3.678810e-01	ci right 3.692254e-01	k: 729735	n:1980000
CYP27B1   1980000 perm   1918 sec   (1032 perm/sec)   p_kst 3.685530e-01   p_cons 4.550505e-04   p_joint 1.484848e-03

Joint ci ratio: 7.204618e-02	ci left: 1.431900e-03	ci right 1.539408e-03	k: 2955	n:1990000
Cons ci ratio: 1.302036e-01	ci left: 4.256296e-04	ci right 4.853875e-04	k: 905	n:1990000
KS ci ratio: 3.637426e-03	ci left: 3.678649e-01	ci right 3.692059e-01	k: 733385	n:1990000
CYP27B1   1990000 perm   1935 sec   (1028 perm/sec)   p_kst 3.685352e-01   p_cons 4.547739e-04   p_joint 1.484925e-03

Joint ci ratio: 7.190044e-02	ci left: 1.430633e-03	ci right 1.537819e-03	k: 2967	n:2000000
Cons ci ratio: 1.300602e-01	ci left: 4.244689e-04	ci right 4.839931e-04	k: 907	n:2000000
KS ci ratio: 3.628132e-03	ci left: 3.678909e-01	ci right 3.692285e-01	k: 737119	n:2000000
CYP27B1   2000000 perm   1952 sec   (1025 perm/sec)   p_kst 3.685595e-01   p_cons 4.535000e-04   p_joint 1.483500e-03

Joint ci ratio: 7.163530e-02	ci left: 1.434264e-03	ci right 1.541310e-03	k: 2989	n:2010000
Cons ci ratio: 1.294202e-01	ci left: 4.266894e-04	ci right 4.862080e-04	k: 916	n:2010000
KS ci ratio: 3.618854e-03	ci left: 3.679236e-01	ci right 3.692579e-01	k: 740867	n:2010000
CYP27B1   2010000 perm   1969 sec   (1021 perm/sec)   p_kst 3.685905e-01   p_cons 4.557214e-04   p_joint 1.487065e-03

Joint ci ratio: 7.294207e-02	ci left: 1.375636e-03	ci right 1.480258e-03	k: 2883	n:2020000
Cons ci ratio: 1.291389e-01	ci left: 4.264932e-04	ci right 4.858453e-04	k: 920	n:2020000
KS ci ratio: 3.609877e-03	ci left: 3.679263e-01	ci right 3.692573e-01	k: 744555	n:2020000
CYP27B1   2020000 perm   1986 sec   (1017 perm/sec)   p_kst 3.685916e-01   p_cons 4.554455e-04   p_joint 1.427228e-03

Joint ci ratio: 7.406966e-02	ci left: 1.326788e-03	ci right 1.429322e-03	k: 2796	n:2030000
Cons ci ratio: 1.287203e-01	ci left: 4.272526e-04	ci right 4.865029e-04	k: 926	n:2030000
KS ci ratio: 3.600860e-03	ci left: 3.679427e-01	ci right 3.692705e-01	k: 748271	n:2030000
CYP27B1   2030000 perm   2004 sec   (1013 perm/sec)   p_kst 3.686064e-01   p_cons 4.561576e-04   p_joint 1.377340e-03

Joint ci ratio: 7.494706e-02	ci left: 1.289014e-03	ci right 1.389861e-03	k: 2731	n:2040000
Cons ci ratio: 1.285125e-01	ci left: 4.265815e-04	ci right 4.856359e-04	k: 929	n:2040000
KS ci ratio: 3.591763e-03	ci left: 3.679781e-01	ci right 3.693026e-01	k: 752026	n:2040000
CYP27B1   2040000 perm   2021 sec   (1009 perm/sec)   p_kst 3.686402e-01   p_cons 4.553922e-04   p_joint 1.338725e-03

Joint ci ratio: 7.472851e-02	ci left: 1.290385e-03	ci right 1.391032e-03	k: 2747	n:2050000
Cons ci ratio: 1.280999e-01	ci left: 4.273335e-04	ci right 4.862877e-04	k: 935	n:2050000
KS ci ratio: 3.583042e-03	ci left: 3.679732e-01	ci right 3.692945e-01	k: 755699	n:2050000
CYP27B1   2050000 perm   2039 sec   (1006 perm/sec)   p_kst 3.686337e-01   p_cons 4.560976e-04   p_joint 1.340000e-03

Joint ci ratio: 7.457943e-02	ci left: 1.289362e-03	ci right 1.389719e-03	k: 2758	n:2060000
Cons ci ratio: 1.275559e-01	ci left: 4.290184e-04	ci right 4.879347e-04	k: 943	n:2060000
KS ci ratio: 3.574448e-03	ci left: 3.679601e-01	ci right 3.692782e-01	k: 759355	n:2060000
CYP27B1   2060000 perm   2056 sec   (1002 perm/sec)   p_kst 3.686189e-01   p_cons 4.577670e-04   p_joint 1.338835e-03

Joint ci ratio: 7.439092e-02	ci left: 1.289770e-03	ci right 1.389894e-03	k: 2772	n:2070000
Cons ci ratio: 1.272865e-01	ci left: 4.288167e-04	ci right 4.875714e-04	k: 947	n:2070000
KS ci ratio: 3.565675e-03	ci left: 3.679785e-01	ci right 3.692934e-01	k: 763076	n:2070000
CYP27B1   2070000 perm   2074 sec   (998 perm/sec)   p_kst 3.686357e-01   p_cons 4.574879e-04   p_joint 1.339130e-03

Joint ci ratio: 7.431070e-02	ci left: 1.286400e-03	ci right 1.386150e-03	k: 2778	n:2080000
Cons ci ratio: 1.270188e-01	ci left: 4.286170e-04	ci right 4.872115e-04	k: 951	n:2080000
KS ci ratio: 3.556496e-03	ci left: 3.680582e-01	ci right 3.693700e-01	k: 766925	n:2080000
CYP27B1   2080000 perm   2092 sec   (994 perm/sec)   p_kst 3.687139e-01   p_cons 4.572115e-04   p_joint 1.335577e-03

Joint ci ratio: 7.415081e-02	ci left: 1.285880e-03	ci right 1.385366e-03	k: 2790	n:2090000
Cons ci ratio: 1.265543e-01	ci left: 4.298092e-04	ci right 4.883358e-04	k: 958	n:2090000
KS ci ratio: 3.547985e-03	ci left: 3.680588e-01	ci right 3.693674e-01	k: 770610	n:2090000
CYP27B1   2090000 perm   2110 sec   (991 perm/sec)   p_kst 3.687129e-01   p_cons 4.583732e-04   p_joint 1.334928e-03

Joint ci ratio: 7.396552e-02	ci left: 1.286300e-03	ci right 1.385559e-03	k: 2804	n:2100000
Cons ci ratio: 1.263569e-01	ci left: 4.291459e-04	ci right 4.874842e-04	k: 961	n:2100000
KS ci ratio: 3.539662e-03	ci left: 3.680427e-01	ci right 3.693482e-01	k: 774260	n:2100000
CYP27B1   2100000 perm   2128 sec   (987 perm/sec)   p_kst 3.686952e-01   p_cons 4.576190e-04   p_joint 1.335238e-03

Joint ci ratio: 7.378161e-02	ci left: 1.286716e-03	ci right 1.385750e-03	k: 2818	n:2110000
Cons ci ratio: 1.257698e-01	ci left: 4.312429e-04	ci right 4.895736e-04	k: 970	n:2110000
KS ci ratio: 3.531278e-03	ci left: 3.680423e-01	ci right 3.693447e-01	k: 777943	n:2110000
CYP27B1   2110000 perm   2146 sec   (983 perm/sec)   p_kst 3.686934e-01   p_cons 4.597156e-04   p_joint 1.335545e-03

Joint ci ratio: 7.358606e-02	ci left: 1.287592e-03	ci right 1.386420e-03	k: 2833	n:2120000
Cons ci ratio: 1.255760e-01	ci left: 4.305794e-04	ci right 4.887239e-04	k: 973	n:2120000
KS ci ratio: 3.522861e-03	ci left: 3.680543e-01	ci right 3.693536e-01	k: 781652	n:2120000
CYP27B1   2120000 perm   2163 sec   (980 perm/sec)   p_kst 3.687038e-01   p_cons 4.589623e-04   p_joint 1.336321e-03

Joint ci ratio: 7.346957e-02	ci left: 1.285695e-03	ci right 1.384214e-03	k: 2842	n:2130000
Cons ci ratio: 1.252549e-01	ci left: 4.308317e-04	ci right 4.888504e-04	k: 978	n:2130000
KS ci ratio: 3.514741e-03	ci left: 3.680347e-01	ci right 3.693309e-01	k: 785294	n:2130000
CYP27B1   2130000 perm   2182 sec   (976 perm/sec)   p_kst 3.686826e-01   p_cons 4.591549e-04   p_joint 1.334272e-03

Joint ci ratio: 7.328933e-02	ci left: 1.286109e-03	ci right 1.384407e-03	k: 2856	n:2140000
Cons ci ratio: 1.248728e-01	ci left: 4.315345e-04	ci right 4.894575e-04	k: 984	n:2140000
KS ci ratio: 3.506477e-03	ci left: 3.680419e-01	ci right 3.693351e-01	k: 788993	n:2140000
CYP27B1   2140000 perm   2199 sec   (973 perm/sec)   p_kst 3.686883e-01   p_cons 4.598131e-04   p_joint 1.334579e-03

Joint ci ratio: 7.314869e-02	ci left: 1.285150e-03	ci right 1.383178e-03	k: 2867	n:2150000
Cons ci ratio: 1.248096e-01	ci left: 4.299779e-04	ci right 4.876606e-04	k: 985	n:2150000
KS ci ratio: 3.498215e-03	ci left: 3.680565e-01	ci right 3.693467e-01	k: 792708	n:2150000
CYP27B1   2150000 perm   2219 sec   (969 perm/sec)   p_kst 3.687014e-01   p_cons 4.581395e-04   p_joint 1.333488e-03

Joint ci ratio: 7.295812e-02	ci left: 1.286017e-03	ci right 1.383846e-03	k: 2882	n:2160000
Cons ci ratio: 1.246202e-01	ci left: 4.293328e-04	ci right 4.868351e-04	k: 988	n:2160000
KS ci ratio: 3.490052e-03	ci left: 3.680653e-01	ci right 3.693526e-01	k: 796411	n:2160000
CYP27B1   2160000 perm   2237 sec   (965 perm/sec)   p_kst 3.687088e-01   p_cons 4.574074e-04   p_joint 1.334259e-03

Joint ci ratio: 7.275646e-02	ci left: 1.287330e-03	ci right 1.384976e-03	k: 2898	n:2170000
Cons ci ratio: 1.245573e-01	ci left: 4.278008e-04	ci right 4.850668e-04	k: 989	n:2170000
KS ci ratio: 3.481974e-03	ci left: 3.680705e-01	ci right 3.693548e-01	k: 800106	n:2170000
CYP27B1   2170000 perm   2256 sec   (962 perm/sec)   p_kst 3.687124e-01   p_cons 4.557604e-04   p_joint 1.335484e-03

Joint ci ratio: 7.261886e-02	ci left: 1.286379e-03	ci right 1.383761e-03	k: 2909	n:2180000
Cons ci ratio: 1.244318e-01	ci left: 4.267272e-04	ci right 4.837878e-04	k: 991	n:2180000
KS ci ratio: 3.473979e-03	ci left: 3.680719e-01	ci right 3.693532e-01	k: 803793	n:2180000
CYP27B1   2180000 perm   2274 sec   (958 perm/sec)   p_kst 3.687124e-01   p_cons 4.545872e-04   p_joint 1.334404e-03

Joint ci ratio: 7.250689e-02	ci left: 1.284540e-03	ci right 1.381626e-03	k: 2918	n:2190000
Cons ci ratio: 1.241194e-01	ci left: 4.269908e-04	ci right 4.839327e-04	k: 996	n:2190000
KS ci ratio: 3.466069e-03	ci left: 3.680692e-01	ci right 3.693476e-01	k: 807471	n:2190000
CYP27B1   2190000 perm   2293 sec   (955 perm/sec)   p_kst 3.687082e-01   p_cons 4.547945e-04   p_joint 1.332420e-03

Joint ci ratio: 7.234598e-02	ci left: 1.284503e-03	ci right 1.381362e-03	k: 2931	n:2200000
Cons ci ratio: 1.238711e-01	ci left: 4.268117e-04	ci right 4.836076e-04	k: 1000	n:2200000
KS ci ratio: 3.458308e-03	ci left: 3.680538e-01	ci right 3.693293e-01	k: 811121	n:2200000
CYP27B1   2200000 perm   2312 sec   (952 perm/sec)   p_kst 3.686914e-01   p_cons 4.545455e-04   p_joint 1.332273e-03

Joint ci ratio: 7.217386e-02	ci left: 1.284911e-03	ci right 1.381561e-03	k: 2945	n:2210000
Cons ci ratio: 1.234402e-01	ci left: 4.279499e-04	ci right 4.846846e-04	k: 1007	n:2210000
KS ci ratio: 3.450653e-03	ci left: 3.680313e-01	ci right 3.693039e-01	k: 814755	n:2210000
CYP27B1   2210000 perm   2330 sec   (948 perm/sec)   p_kst 3.686674e-01   p_cons 4.556561e-04   p_joint 1.332579e-03

Joint ci ratio: 7.227240e-02	ci left: 1.275585e-03	ci right 1.371670e-03	k: 2937	n:2220000
Cons ci ratio: 1.231960e-01	ci left: 4.277684e-04	ci right 4.843587e-04	k: 1011	n:2220000
KS ci ratio: 3.442721e-03	ci left: 3.680532e-01	ci right 3.693229e-01	k: 818487	n:2220000
CYP27B1   2220000 perm   2349 sec   (945 perm/sec)   p_kst 3.686878e-01   p_cons 4.554054e-04   p_joint 1.322973e-03

Joint ci ratio: 7.185748e-02	ci left: 1.284837e-03	ci right 1.381040e-03	k: 2971	n:2230000
Cons ci ratio: 1.228324e-01	ci left: 4.284580e-04	ci right 4.849600e-04	k: 1017	n:2230000
KS ci ratio: 3.435066e-03	ci left: 3.680448e-01	ci right 3.693116e-01	k: 822152	n:2230000
CYP27B1   2230000 perm   2368 sec   (942 perm/sec)   p_kst 3.686780e-01   p_cons 4.560538e-04   p_joint 1.332287e-03

Joint ci ratio: 7.170084e-02	ci left: 1.284800e-03	ci right 1.380782e-03	k: 2984	n:2240000
Cons ci ratio: 1.225918e-01	ci left: 4.282761e-04	ci right 4.846355e-04	k: 1021	n:2240000
KS ci ratio: 3.427471e-03	ci left: 3.680351e-01	ci right 3.692991e-01	k: 825814	n:2240000
CYP27B1   2240000 perm   2387 sec   (939 perm/sec)   p_kst 3.686670e-01   p_cons 4.558036e-04   p_joint 1.332143e-03

Joint ci ratio: 7.155717e-02	ci left: 1.284328e-03	ci right 1.380074e-03	k: 2996	n:2250000
Cons ci ratio: 1.222930e-01	ci left: 4.285269e-04	ci right 4.847719e-04	k: 1026	n:2250000
KS ci ratio: 3.419894e-03	ci left: 3.680300e-01	ci right 3.692912e-01	k: 829486	n:2250000
CYP27B1   2250000 perm   2405 sec   (935 perm/sec)   p_kst 3.686604e-01   p_cons 4.560000e-04   p_joint 1.331556e-03

Joint ci ratio: 7.135502e-02	ci left: 1.286033e-03	ci right 1.381624e-03	k: 3013	n:2260000
Cons ci ratio: 1.218783e-01	ci left: 4.296335e-04	ci right 4.858187e-04	k: 1033	n:2260000
KS ci ratio: 3.412211e-03	ci left: 3.680462e-01	ci right 3.693046e-01	k: 833206	n:2260000
CYP27B1   2260000 perm   2425 sec   (932 perm/sec)   p_kst 3.686752e-01   p_cons 4.570796e-04   p_joint 1.333186e-03

Joint ci ratio: 7.123700e-02	ci left: 1.284694e-03	ci right 1.380021e-03	k: 3023	n:2270000
Cons ci ratio: 1.214678e-01	ci left: 4.307307e-04	ci right 4.868560e-04	k: 1040	n:2270000
KS ci ratio: 3.404744e-03	ci left: 3.680398e-01	ci right 3.692954e-01	k: 836875	n:2270000
CYP27B1   2270000 perm   2444 sec   (929 perm/sec)   p_kst 3.686674e-01   p_cons 4.581498e-04   p_joint 1.331718e-03

Joint ci ratio: 7.116655e-02	ci left: 1.281644e-03	ci right 1.376647e-03	k: 3029	n:2280000
Cons ci ratio: 1.211771e-01	ci left: 4.309680e-04	ci right 4.869802e-04	k: 1045	n:2280000
KS ci ratio: 3.397412e-03	ci left: 3.680215e-01	ci right 3.692744e-01	k: 840517	n:2280000
CYP27B1   2280000 perm   2463 sec   (926 perm/sec)   p_kst 3.686478e-01   p_cons 4.583333e-04   p_joint 1.328509e-03

Joint ci ratio: 7.102606e-02	ci left: 1.281195e-03	ci right 1.375969e-03	k: 3041	n:2290000
Cons ci ratio: 1.209461e-01	ci left: 4.307798e-04	ci right 4.866533e-04	k: 1049	n:2290000
KS ci ratio: 3.390160e-03	ci left: 3.679991e-01	ci right 3.692492e-01	k: 844149	n:2290000
CYP27B1   2290000 perm   2482 sec   (922 perm/sec)   p_kst 3.686240e-01   p_cons 4.580786e-04   p_joint 1.327948e-03

Joint ci ratio: 7.083996e-02	ci left: 1.282457e-03	ci right 1.377066e-03	k: 3057	n:2300000
Cons ci ratio: 1.205449e-01	ci left: 4.318584e-04	ci right 4.876727e-04	k: 1056	n:2300000
KS ci ratio: 3.382868e-03	ci left: 3.679887e-01	ci right 3.692360e-01	k: 847808	n:2300000
CYP27B1   2300000 perm   2501 sec   (919 perm/sec)   p_kst 3.686122e-01   p_cons 4.591304e-04   p_joint 1.329130e-03

Joint ci ratio: 7.059785e-02	ci left: 1.285836e-03	ci right 1.380357e-03	k: 3078	n:2310000
Cons ci ratio: 1.202041e-01	ci left: 4.325081e-04	ci right 4.882371e-04	k: 1062	n:2310000
KS ci ratio: 3.375441e-03	ci left: 3.680034e-01	ci right 3.692480e-01	k: 851525	n:2310000
CYP27B1   2310000 perm   2521 sec   (916 perm/sec)   p_kst 3.686255e-01   p_cons 4.597403e-04   p_joint 1.332468e-03

Joint ci ratio: 7.047212e-02	ci left: 1.284951e-03	ci right 1.379232e-03	k: 3089	n:2320000
Cons ci ratio: 1.198663e-01	ci left: 4.331524e-04	ci right 4.887965e-04	k: 1068	n:2320000
KS ci ratio: 3.368271e-03	ci left: 3.679891e-01	ci right 3.692311e-01	k: 855175	n:2320000
CYP27B1   2320000 perm   2541 sec   (913 perm/sec)   p_kst 3.686099e-01   p_cons 4.603448e-04   p_joint 1.331466e-03

Joint ci ratio: 7.026768e-02	ci left: 1.287026e-03	ci right 1.381173e-03	k: 3107	n:2330000
Cons ci ratio: 1.196985e-01	ci left: 4.325424e-04	ci right 4.880248e-04	k: 1071	n:2330000
KS ci ratio: 3.361144e-03	ci left: 3.679754e-01	ci right 3.692147e-01	k: 858826	n:2330000
CYP27B1   2330000 perm   2560 sec   (910 perm/sec)   p_kst 3.685948e-01   p_cons 4.596567e-04   p_joint 1.333476e-03

Joint ci ratio: 6.775984e-02	ci left: 1.379803e-03	ci right 1.476993e-03	k: 3341	n:2340000
Cons ci ratio: 1.194758e-01	ci left: 4.323522e-04	ci right 4.876997e-04	k: 1075	n:2340000
KS ci ratio: 3.354028e-03	ci left: 3.679665e-01	ci right 3.692031e-01	k: 862488	n:2340000
CYP27B1   2340000 perm   2580 sec   (907 perm/sec)   p_kst 3.685846e-01   p_cons 4.594017e-04   p_joint 1.427778e-03

Joint ci ratio: 6.766887e-02	ci left: 1.377696e-03	ci right 1.474603e-03	k: 3350	n:2350000
Cons ci ratio: 1.193096e-01	ci left: 4.317508e-04	ci right 4.869391e-04	k: 1078	n:2350000
KS ci ratio: 3.346918e-03	ci left: 3.679632e-01	ci right 3.691972e-01	k: 866163	n:2350000
CYP27B1   2350000 perm   2600 sec   (904 perm/sec)   p_kst 3.685800e-01   p_cons 4.587234e-04   p_joint 1.425532e-03

Joint ci ratio: 6.750787e-02	ci left: 1.378523e-03	ci right 1.475249e-03	k: 3366	n:2360000
Cons ci ratio: 1.190891e-01	ci left: 4.315658e-04	ci right 4.866212e-04	k: 1082	n:2360000
KS ci ratio: 3.339612e-03	ci left: 3.679934e-01	ci right 3.692248e-01	k: 869917	n:2360000
CYP27B1   2360000 perm   2620 sec   (901 perm/sec)   p_kst 3.686089e-01   p_cons 4.584746e-04   p_joint 1.426271e-03

Joint ci ratio: 6.733805e-02	ci left: 1.379759e-03	ci right 1.476318e-03	k: 3383	n:2370000
Cons ci ratio: 1.188151e-01	ci left: 4.317917e-04	ci right 4.867404e-04	k: 1087	n:2370000
KS ci ratio: 3.332650e-03	ci left: 3.679820e-01	ci right 3.692108e-01	k: 873573	n:2370000
CYP27B1   2370000 perm   2640 sec   (898 perm/sec)   p_kst 3.685962e-01   p_cons 4.586498e-04   p_joint 1.427426e-03

Joint ci ratio: 6.720909e-02	ci left: 1.379332e-03	ci right 1.475669e-03	k: 3396	n:2380000
Cons ci ratio: 1.185974e-01	ci left: 4.316083e-04	ci right 4.864258e-04	k: 1091	n:2380000
KS ci ratio: 3.325584e-03	ci left: 3.679913e-01	ci right 3.692175e-01	k: 877278	n:2380000
CYP27B1   2380000 perm   2660 sec   (895 perm/sec)   p_kst 3.686042e-01   p_cons 4.584034e-04   p_joint 1.426891e-03

Joint ci ratio: 6.782185e-02	ci left: 1.348468e-03	ci right 1.443542e-03	k: 3335	n:2390000
Cons ci ratio: 1.182190e-01	ci left: 4.326445e-04	ci right 4.874061e-04	k: 1098	n:2390000
KS ci ratio: 3.318658e-03	ci left: 3.679871e-01	ci right 3.692107e-01	k: 880951	n:2390000
CYP27B1   2390000 perm   2680 sec   (892 perm/sec)   p_kst 3.685987e-01   p_cons 4.594142e-04   p_joint 1.395397e-03

Joint ci ratio: 6.766987e-02	ci left: 1.348993e-03	ci right 1.443883e-03	k: 3350	n:2400000
Cons ci ratio: 1.181653e-01	ci left: 4.312462e-04	ci right 4.858043e-04	k: 1099	n:2400000
KS ci ratio: 3.311805e-03	ci left: 3.679788e-01	ci right 3.691999e-01	k: 884614	n:2400000
CYP27B1   2400000 perm   2699 sec   (889 perm/sec)   p_kst 3.685892e-01   p_cons 4.579167e-04   p_joint 1.395833e-03

Joint ci ratio: 6.792427e-02	ci left: 1.333198e-03	ci right 1.427343e-03	k: 3325	n:2410000
Cons ci ratio: 1.179511e-01	ci left: 4.310675e-04	ci right 4.854972e-04	k: 1103	n:2410000
KS ci ratio: 3.305239e-03	ci left: 3.679361e-01	ci right 3.691546e-01	k: 888194	n:2410000
CYP27B1   2410000 perm   2719 sec   (886 perm/sec)   p_kst 3.685452e-01   p_cons 4.576763e-04   p_joint 1.379668e-03

Joint ci ratio: 6.891716e-02	ci left: 1.289103e-03	ci right 1.381518e-03	k: 3230	n:2420000
Cons ci ratio: 1.177912e-01	ci left: 4.304893e-04	ci right 4.847673e-04	k: 1106	n:2420000
KS ci ratio: 3.298112e-03	ci left: 3.679785e-01	ci right 3.691945e-01	k: 891979	n:2420000
CYP27B1   2420000 perm   2740 sec   (883 perm/sec)   p_kst 3.685864e-01   p_cons 4.570248e-04   p_joint 1.334711e-03

Joint ci ratio: 6.873652e-02	ci left: 1.290674e-03	ci right 1.382949e-03	k: 3247	n:2430000
Cons ci ratio: 1.176319e-01	ci left: 4.299160e-04	ci right 4.840433e-04	k: 1109	n:2430000
KS ci ratio: 3.291280e-03	ci left: 3.679852e-01	ci right 3.691987e-01	k: 895678	n:2430000
CYP27B1   2430000 perm   2761 sec   (880 perm/sec)   p_kst 3.685918e-01   p_cons 4.563786e-04   p_joint 1.336214e-03

Joint ci ratio: 6.860991e-02	ci left: 1.290218e-03	ci right 1.382284e-03	k: 3259	n:2440000
Cons ci ratio: 1.175262e-01	ci left: 4.289496e-04	ci right 4.829033e-04	k: 1111	n:2440000
KS ci ratio: 3.284529e-03	ci left: 3.679864e-01	ci right 3.691975e-01	k: 899364	n:2440000
CYP27B1   2440000 perm   2782 sec   (877 perm/sec)   p_kst 3.685918e-01   p_cons 4.553279e-04   p_joint 1.335656e-03

Joint ci ratio: 6.519468e-02	ci left: 1.425424e-03	ci right 1.521883e-03	k: 3609	n:2450000
Cons ci ratio: 1.172628e-01	ci left: 4.291797e-04	ci right 4.830329e-04	k: 1116	n:2450000
KS ci ratio: 3.277956e-03	ci left: 3.679681e-01	ci right 3.691767e-01	k: 903002	n:2450000
CYP27B1   2450000 perm   2802 sec   (874 perm/sec)   p_kst 3.685722e-01   p_cons 4.555102e-04   p_joint 1.473061e-03

Joint ci ratio: 6.601490e-02	ci left: 1.384043e-03	ci right 1.478926e-03	k: 3520	n:2460000
Cons ci ratio: 1.171057e-01	ci left: 4.286188e-04	ci right 4.823246e-04	k: 1119	n:2460000
KS ci ratio: 3.271421e-03	ci left: 3.679504e-01	ci right 3.691564e-01	k: 906641	n:2460000
CYP27B1   2460000 perm   2823 sec   (871 perm/sec)   p_kst 3.685533e-01   p_cons 4.548780e-04   p_joint 1.430894e-03

Joint ci ratio: 6.457991e-02	ci left: 1.441364e-03	ci right 1.537948e-03	k: 3678	n:2470000
Cons ci ratio: 1.168452e-01	ci left: 4.288486e-04	ci right 4.824554e-04	k: 1124	n:2470000
KS ci ratio: 3.264969e-03	ci left: 3.679263e-01	ci right 3.691299e-01	k: 910264	n:2470000
CYP27B1   2470000 perm   2844 sec   (869 perm/sec)   p_kst 3.685279e-01   p_cons 4.550607e-04   p_joint 1.489069e-03

Joint ci ratio: 6.537688e-02	ci left: 1.400247e-03	ci right 1.495278e-03	k: 3589	n:2480000
Cons ci ratio: 1.165864e-01	ci left: 4.290766e-04	ci right 4.825850e-04	k: 1129	n:2480000
KS ci ratio: 3.258234e-03	ci left: 3.679483e-01	ci right 3.691495e-01	k: 914001	n:2480000
CYP27B1   2480000 perm   2865 sec   (866 perm/sec)   p_kst 3.685488e-01   p_cons 4.552419e-04   p_joint 1.447177e-03

Joint ci ratio: 6.524072e-02	ci left: 1.400549e-03	ci right 1.495395e-03	k: 3604	n:2490000
Cons ci ratio: 1.164320e-01	ci left: 4.285231e-04	ci right 4.818868e-04	k: 1132	n:2490000
KS ci ratio: 3.251568e-03	ci left: 3.679662e-01	ci right 3.691650e-01	k: 917728	n:2490000
CYP27B1   2490000 perm   2885 sec   (863 perm/sec)   p_kst 3.685655e-01   p_cons 4.546185e-04   p_joint 1.447390e-03

Joint ci ratio: 6.508740e-02	ci left: 1.401636e-03	ci right 1.496324e-03	k: 3621	n:2500000
Cons ci ratio: 1.160230e-01	ci left: 4.299160e-04	ci right 4.832522e-04	k: 1140	n:2500000
KS ci ratio: 3.245072e-03	ci left: 3.679656e-01	ci right 3.691619e-01	k: 921409	n:2500000
CYP27B1   2500000 perm   2907 sec   (860 perm/sec)   p_kst 3.685636e-01   p_cons 4.560000e-04   p_joint 1.448400e-03

Joint ci ratio: 6.494410e-02	ci left: 1.402323e-03	ci right 1.496841e-03	k: 3637	n:2510000
Cons ci ratio: 1.158202e-01	ci left: 4.297506e-04	ci right 4.829667e-04	k: 1144	n:2510000
KS ci ratio: 3.238364e-03	ci left: 3.680007e-01	ci right 3.691948e-01	k: 925180	n:2510000
CYP27B1   2510000 perm   2928 sec   (857 perm/sec)   p_kst 3.685976e-01   p_cons 4.557769e-04   p_joint 1.449004e-03

Joint ci ratio: 6.478398e-02	ci left: 1.403785e-03	ci right 1.498160e-03	k: 3655	n:2520000
Cons ci ratio: 1.156184e-01	ci left: 4.295866e-04	ci right 4.826834e-04	k: 1148	n:2520000
KS ci ratio: 3.232084e-03	ci left: 3.679801e-01	ci right 3.691718e-01	k: 928811	n:2520000
CYP27B1   2520000 perm   2949 sec   (855 perm/sec)   p_kst 3.685758e-01   p_cons 4.555556e-04   p_joint 1.450397e-03

Joint ci ratio: 6.554257e-02	ci left: 1.365575e-03	ci right 1.458497e-03	k: 3571	n:2530000
Cons ci ratio: 1.154678e-01	ci left: 4.290401e-04	ci right 4.819956e-04	k: 1151	n:2530000
KS ci ratio: 3.225964e-03	ci left: 3.679419e-01	ci right 3.691311e-01	k: 932397	n:2530000
CYP27B1   2530000 perm   2970 sec   (852 perm/sec)   p_kst 3.685364e-01   p_cons 4.549407e-04   p_joint 1.411462e-03

Joint ci ratio: 6.547853e-02	ci left: 1.362910e-03	ci right 1.455556e-03	k: 3578	n:2540000
Cons ci ratio: 1.151682e-01	ci left: 4.296451e-04	ci right 4.825283e-04	k: 1157	n:2540000
KS ci ratio: 3.219733e-03	ci left: 3.679248e-01	ci right 3.691117e-01	k: 936036	n:2540000
CYP27B1   2540000 perm   2992 sec   (849 perm/sec)   p_kst 3.685181e-01   p_cons 4.555118e-04   p_joint 1.408661e-03

Joint ci ratio: 6.569968e-02	ci left: 1.348307e-03	ci right 1.440282e-03	k: 3554	n:2550000
Cons ci ratio: 1.149204e-01	ci left: 4.298645e-04	ci right 4.826532e-04	k: 1162	n:2550000
KS ci ratio: 3.213306e-03	ci left: 3.679416e-01	ci right 3.691262e-01	k: 939761	n:2550000
CYP27B1   2550000 perm   3012 sec   (846 perm/sec)   p_kst 3.685337e-01   p_cons 4.556863e-04   p_joint 1.393725e-03

Joint ci ratio: 6.553393e-02	ci left: 1.349956e-03	ci right 1.441802e-03	k: 3572	n:2560000
Cons ci ratio: 1.146741e-01	ci left: 4.300824e-04	ci right 4.827770e-04	k: 1167	n:2560000
KS ci ratio: 3.207057e-03	ci left: 3.679379e-01	ci right 3.691202e-01	k: 943434	n:2560000
CYP27B1   2560000 perm   3034 sec   (844 perm/sec)   p_kst 3.685289e-01   p_cons 4.558594e-04   p_joint 1.395313e-03

Joint ci ratio: 6.544246e-02	ci left: 1.348531e-03	ci right 1.440147e-03	k: 3582	n:2570000
Cons ci ratio: 1.143807e-01	ci left: 4.306767e-04	ci right 4.833000e-04	k: 1173	n:2570000
KS ci ratio: 3.200981e-03	ci left: 3.679145e-01	ci right 3.690944e-01	k: 947056	n:2570000
CYP27B1   2570000 perm   3056 sec   (841 perm/sec)   p_kst 3.685043e-01   p_cons 4.564202e-04   p_joint 1.393774e-03

Joint ci ratio: 6.537872e-02	ci left: 1.345973e-03	ci right 1.437323e-03	k: 3589	n:2580000
Cons ci ratio: 1.142349e-01	ci left: 4.301370e-04	ci right 4.826228e-04	k: 1176	n:2580000
KS ci ratio: 3.194681e-03	ci left: 3.679288e-01	ci right 3.691064e-01	k: 950775	n:2580000
CYP27B1   2580000 perm   3078 sec   (838 perm/sec)   p_kst 3.685174e-01   p_cons 4.558140e-04   p_joint 1.391085e-03

Joint ci ratio: 6.586758e-02	ci left: 1.320648e-03	ci right 1.410975e-03	k: 3536	n:2590000
Cons ci ratio: 1.139448e-01	ci left: 4.307267e-04	ci right 4.831420e-04	k: 1182	n:2590000
KS ci ratio: 3.188471e-03	ci left: 3.679352e-01	ci right 3.691106e-01	k: 954474	n:2590000
CYP27B1   2590000 perm   3100 sec   (836 perm/sec)   p_kst 3.685228e-01   p_cons 4.563707e-04   p_joint 1.365251e-03

Joint ci ratio: 6.573760e-02	ci left: 1.320864e-03	ci right 1.411021e-03	k: 3550	n:2600000
Cons ci ratio: 1.137047e-01	ci left: 4.309384e-04	ci right 4.832616e-04	k: 1187	n:2600000
KS ci ratio: 3.182366e-03	ci left: 3.679317e-01	ci right 3.691048e-01	k: 958147	n:2600000
CYP27B1   2600000 perm   3121 sec   (833 perm/sec)   p_kst 3.685181e-01   p_cons 4.565385e-04   p_joint 1.365385e-03

Joint ci ratio: 6.565451e-02	ci left: 1.319195e-03	ci right 1.409120e-03	k: 3559	n:2610000
Cons ci ratio: 1.135615e-01	ci left: 4.304040e-04	ci right 4.825921e-04	k: 1190	n:2610000
KS ci ratio: 3.176465e-03	ci left: 3.679032e-01	ci right 3.690741e-01	k: 961755	n:2610000
CYP27B1   2610000 perm   3143 sec   (830 perm/sec)   p_kst 3.684885e-01   p_cons 4.559387e-04   p_joint 1.363602e-03

Joint ci ratio: 6.557174e-02	ci left: 1.317539e-03	ci right 1.407233e-03	k: 3568	n:2620000
Cons ci ratio: 1.135139e-01	ci left: 4.291321e-04	ci right 4.811427e-04	k: 1191	n:2620000
KS ci ratio: 3.170629e-03	ci left: 3.678704e-01	ci right 3.690390e-01	k: 965351	n:2620000
CYP27B1   2620000 perm   3165 sec   (828 perm/sec)   p_kst 3.684546e-01   p_cons 4.545802e-04   p_joint 1.361832e-03

Joint ci ratio: 6.582170e-02	ci left: 1.302431e-03	ci right 1.391448e-03	k: 3541	n:2630000
Cons ci ratio: 1.131348e-01	ci left: 4.304560e-04	ci right 4.824412e-04	k: 1199	n:2630000
KS ci ratio: 3.164739e-03	ci left: 3.678504e-01	ci right 3.690168e-01	k: 968980	n:2630000
CYP27B1   2630000 perm   3186 sec   (825 perm/sec)   p_kst 3.684335e-01   p_cons 4.558935e-04   p_joint 1.346388e-03

Joint ci ratio: 6.458301e-02	ci left: 1.348547e-03	ci right 1.438916e-03	k: 3678	n:2640000
Cons ci ratio: 1.127595e-01	ci left: 4.317702e-04	ci right 4.837297e-04	k: 1207	n:2640000
KS ci ratio: 3.158781e-03	ci left: 3.678453e-01	ci right 3.690095e-01	k: 972648	n:2640000
CYP27B1   2640000 perm   3208 sec   (823 perm/sec)   p_kst 3.684273e-01   p_cons 4.571970e-04   p_joint 1.393182e-03

Joint ci ratio: 6.445174e-02	ci left: 1.349027e-03	ci right 1.439238e-03	k: 3693	n:2650000
Cons ci ratio: 1.124805e-01	ci left: 4.323413e-04	ci right 4.842322e-04	k: 1213	n:2650000
KS ci ratio: 3.152648e-03	ci left: 3.678712e-01	ci right 3.690332e-01	k: 976398	n:2650000
CYP27B1   2650000 perm   3230 sec   (820 perm/sec)   p_kst 3.684521e-01   p_cons 4.577358e-04   p_joint 1.393585e-03

Joint ci ratio: 6.436472e-02	ci left: 1.347654e-03	ci right 1.437647e-03	k: 3703	n:2660000
Cons ci ratio: 1.124343e-01	ci left: 4.310813e-04	ci right 4.827983e-04	k: 1214	n:2660000
KS ci ratio: 3.146684e-03	ci left: 3.678770e-01	ci right 3.690368e-01	k: 980095	n:2660000
CYP27B1   2660000 perm   3252 sec   (818 perm/sec)   p_kst 3.684568e-01   p_cons 4.563910e-04   p_joint 1.392105e-03

Joint ci ratio: 6.424343e-02	ci left: 1.347766e-03	ci right 1.437590e-03	k: 3717	n:2670000
Cons ci ratio: 1.122957e-01	ci left: 4.305588e-04	ci right 4.821452e-04	k: 1217	n:2670000
KS ci ratio: 3.140674e-03	ci left: 3.678947e-01	ci right 3.690524e-01	k: 983824	n:2670000
CYP27B1   2670000 perm   3273 sec   (816 perm/sec)   p_kst 3.684734e-01   p_cons 4.558052e-04   p_joint 1.392135e-03

Joint ci ratio: 6.018171e-02	ci left: 1.533022e-03	ci right 1.628508e-03	k: 4235	n:2680000
Cons ci ratio: 1.118830e-01	ci left: 4.322163e-04	ci right 4.837984e-04	k: 1226	n:2680000
KS ci ratio: 3.134889e-03	ci left: 3.678840e-01	ci right 3.690394e-01	k: 987477	n:2680000
CYP27B1   2680000 perm   3295 sec   (813 perm/sec)   p_kst 3.684616e-01   p_cons 4.574627e-04   p_joint 1.580224e-03

Joint ci ratio: 6.007545e-02	ci left: 1.532815e-03	ci right 1.628114e-03	k: 4250	n:2690000
Cons ci ratio: 1.116558e-01	ci left: 4.324163e-04	ci right 4.839106e-04	k: 1231	n:2690000
KS ci ratio: 3.128993e-03	ci left: 3.678945e-01	ci right 3.690478e-01	k: 991187	n:2690000
CYP27B1   2690000 perm   3317 sec   (811 perm/sec)   p_kst 3.684710e-01   p_cons 4.576208e-04   p_joint 1.579926e-03

Joint ci ratio: 6.141410e-02	ci left: 1.460388e-03	ci right 1.553279e-03	k: 4067	n:2700000
Cons ci ratio: 1.114750e-01	ci left: 4.322549e-04	ci right 4.836412e-04	k: 1235	n:2700000
KS ci ratio: 3.123222e-03	ci left: 3.678912e-01	ci right 3.690424e-01	k: 994860	n:2700000
CYP27B1   2700000 perm   3340 sec   (808 perm/sec)   p_kst 3.684667e-01   p_cons 4.574074e-04   p_joint 1.506296e-03

Joint ci ratio: 6.151279e-02	ci left: 1.450275e-03	ci right 1.542677e-03	k: 4054	n:2710000
Cons ci ratio: 1.111159e-01	ci left: 4.335298e-04	ci right 4.848907e-04	k: 1243	n:2710000
KS ci ratio: 3.117666e-03	ci left: 3.678607e-01	ci right 3.690097e-01	k: 998459	n:2710000
CYP27B1   2710000 perm   3362 sec   (806 perm/sec)   p_kst 3.684351e-01   p_cons 4.586716e-04   p_joint 1.495941e-03

Joint ci ratio: 6.136913e-02	ci left: 1.451821e-03	ci right 1.544098e-03	k: 4073	n:2720000
Cons ci ratio: 1.109377e-01	ci left: 4.333656e-04	ci right 4.846194e-04	k: 1247	n:2720000
KS ci ratio: 3.112157e-03	ci left: 3.678278e-01	ci right 3.689747e-01	k: 1002051	n:2720000
CYP27B1   2720000 perm   3384 sec   (804 perm/sec)   p_kst 3.684011e-01   p_cons 4.584559e-04   p_joint 1.497426e-03

Joint ci ratio: 6.128650e-02	ci left: 1.450471e-03	ci right 1.542533e-03	k: 4084	n:2730000
Cons ci ratio: 1.107161e-01	ci left: 4.335590e-04	ci right 4.847265e-04	k: 1252	n:2730000
KS ci ratio: 3.106410e-03	ci left: 3.678351e-01	ci right 3.689799e-01	k: 1005752	n:2730000
CYP27B1   2730000 perm   3407 sec   (801 perm/sec)   p_kst 3.684073e-01   p_cons 4.586081e-04   p_joint 1.495971e-03

Joint ci ratio: 6.116681e-02	ci left: 1.450927e-03	ci right 1.542832e-03	k: 4100	n:2740000
Cons ci ratio: 1.105838e-01	ci left: 4.330412e-04	ci right 4.840826e-04	k: 1255	n:2740000
KS ci ratio: 3.100708e-03	ci left: 3.678405e-01	ci right 3.689832e-01	k: 1009448	n:2740000
CYP27B1   2740000 perm   3429 sec   (799 perm/sec)   p_kst 3.684117e-01   p_cons 4.580292e-04   p_joint 1.496350e-03

Joint ci ratio: 6.106268e-02	ci left: 1.450664e-03	ci right 1.542391e-03	k: 4114	n:2750000
Cons ci ratio: 1.103206e-01	ci left: 4.335881e-04	ci right 4.845643e-04	k: 1261	n:2750000
KS ci ratio: 3.095067e-03	ci left: 3.678411e-01	ci right 3.689817e-01	k: 1013131	n:2750000
CYP27B1   2750000 perm   3452 sec   (797 perm/sec)   p_kst 3.684113e-01   p_cons 4.585455e-04   p_joint 1.496000e-03

Joint ci ratio: 6.091478e-02	ci left: 1.452544e-03	ci right 1.544159e-03	k: 4134	n:2760000
Cons ci ratio: 1.100593e-01	ci left: 4.341311e-04	ci right 4.850425e-04	k: 1267	n:2760000
KS ci ratio: 3.089468e-03	ci left: 3.678403e-01	ci right 3.689788e-01	k: 1016810	n:2760000
CYP27B1   2760000 perm   3474 sec   (794 perm/sec)   p_kst 3.684094e-01   p_cons 4.590580e-04   p_joint 1.497826e-03

Joint ci ratio: 6.084866e-02	ci left: 1.450500e-03	ci right 1.541883e-03	k: 4143	n:2770000
Cons ci ratio: 1.099293e-01	ci left: 4.336171e-04	ci right 4.844042e-04	k: 1270	n:2770000
KS ci ratio: 3.083846e-03	ci left: 3.678474e-01	ci right 3.689839e-01	k: 1020511	n:2770000
CYP27B1   2770000 perm   3497 sec   (792 perm/sec)   p_kst 3.684155e-01   p_cons 4.584838e-04   p_joint 1.495668e-03

Joint ci ratio: 6.069500e-02	ci left: 1.452721e-03	ci right 1.544005e-03	k: 4164	n:2780000
Cons ci ratio: 1.096278e-01	ci left: 4.345062e-04	ci right 4.852489e-04	k: 1277	n:2780000
KS ci ratio: 3.078216e-03	ci left: 3.678603e-01	ci right 3.689947e-01	k: 1024228	n:2780000
CYP27B1   2780000 perm   3520 sec   (790 perm/sec)   p_kst 3.684273e-01   p_cons 4.593525e-04   p_joint 1.497842e-03

Joint ci ratio: 6.213093e-02	ci left: 1.380458e-03	ci right 1.469327e-03	k: 3974	n:2790000
Cons ci ratio: 1.094567e-01	ci left: 4.343432e-04	ci right 4.849826e-04	k: 1281	n:2790000
KS ci ratio: 3.072868e-03	ci left: 3.678350e-01	ci right 3.689674e-01	k: 1027839	n:2790000
CYP27B1   2790000 perm   3543 sec   (788 perm/sec)   p_kst 3.684011e-01   p_cons 4.591398e-04   p_joint 1.424373e-03

Joint ci ratio: 6.199069e-02	ci left: 1.381857e-03	ci right 1.470608e-03	k: 3992	n:2800000
Cons ci ratio: 1.091590e-01	ci left: 4.352236e-04	ci right 4.858188e-04	k: 1288	n:2800000
KS ci ratio: 3.067322e-03	ci left: 3.678442e-01	ci right 3.689746e-01	k: 1031546	n:2800000
CYP27B1   2800000 perm   3566 sec   (785 perm/sec)   p_kst 3.684093e-01   p_cons 4.600000e-04   p_joint 1.425714e-03

Joint ci ratio: 6.185139e-02	ci left: 1.383246e-03	ci right 1.471879e-03	k: 4010	n:2810000
Cons ci ratio: 1.089479e-01	ci left: 4.354056e-04	ci right 4.859178e-04	k: 1293	n:2810000
KS ci ratio: 3.061976e-03	ci left: 3.678274e-01	ci right 3.689558e-01	k: 1035180	n:2810000
CYP27B1   2810000 perm   3590 sec   (783 perm/sec)   p_kst 3.683915e-01   p_cons 4.601423e-04   p_joint 1.427046e-03

Joint ci ratio: 6.177448e-02	ci left: 1.381832e-03	ci right 1.470261e-03	k: 4020	n:2820000
Cons ci ratio: 1.086962e-01	ci left: 4.359314e-04	ci right 4.863802e-04	k: 1299	n:2820000
KS ci ratio: 3.056589e-03	ci left: 3.678214e-01	ci right 3.689477e-01	k: 1038844	n:2820000
CYP27B1   2820000 perm   3613 sec   (781 perm/sec)   p_kst 3.683844e-01   p_cons 4.606383e-04   p_joint 1.425532e-03

Joint ci ratio: 6.187488e-02	ci left: 1.372426e-03	ci right 1.460401e-03	k: 4007	n:2830000
Cons ci ratio: 1.085710e-01	ci left: 4.354223e-04	ci right 4.857504e-04	k: 1302	n:2830000
KS ci ratio: 3.051188e-03	ci left: 3.678217e-01	ci right 3.689461e-01	k: 1042526	n:2830000
CYP27B1   2830000 perm   3636 sec   (778 perm/sec)   p_kst 3.683837e-01   p_cons 4.600707e-04   p_joint 1.415901e-03

Joint ci ratio: 6.252675e-02	ci left: 1.338822e-03	ci right 1.425580e-03	k: 3924	n:2840000
Cons ci ratio: 1.084047e-01	ci left: 4.352593e-04	ci right 4.854867e-04	k: 1306	n:2840000
KS ci ratio: 3.045680e-03	ci left: 3.678428e-01	ci right 3.689652e-01	k: 1046267	n:2840000
CYP27B1   2840000 perm   3659 sec   (776 perm/sec)   p_kst 3.684039e-01   p_cons 4.598592e-04   p_joint 1.381690e-03

Joint ci ratio: 6.245524e-02	ci left: 1.337233e-03	ci right 1.423785e-03	k: 3933	n:2850000
Cons ci ratio: 1.081980e-01	ci left: 4.354390e-04	ci right 4.855851e-04	k: 1311	n:2850000
KS ci ratio: 3.040359e-03	ci left: 3.678396e-01	ci right 3.689600e-01	k: 1049939	n:2850000
CYP27B1   2850000 perm   3683 sec   (774 perm/sec)   p_kst 3.683996e-01   p_cons 4.600000e-04   p_joint 1.380000e-03

Joint ci ratio: 6.236022e-02	ci left: 1.336688e-03	ci right 1.423068e-03	k: 3945	n:2860000
Cons ci ratio: 1.080334e-01	ci left: 4.352772e-04	ci right 4.853237e-04	k: 1315	n:2860000
KS ci ratio: 3.034916e-03	ci left: 3.678594e-01	ci right 3.689779e-01	k: 1053677	n:2860000
CYP27B1   2860000 perm   3706 sec   (772 perm/sec)   p_kst 3.684185e-01   p_cons 4.597902e-04   p_joint 1.379371e-03

Joint ci ratio: 6.222629e-02	ci left: 1.337861e-03	ci right 1.424125e-03	k: 3962	n:2870000
Cons ci ratio: 1.079925e-01	ci left: 4.340996e-04	ci right 4.839905e-04	k: 1316	n:2870000
KS ci ratio: 3.029450e-03	ci left: 3.678872e-01	ci right 3.690037e-01	k: 1057438	n:2870000
CYP27B1   2870000 perm   3730 sec   (770 perm/sec)   p_kst 3.684453e-01   p_cons 4.585366e-04   p_joint 1.380488e-03

Joint ci ratio: 6.210885e-02	ci left: 1.338343e-03	ci right 1.424470e-03	k: 3977	n:2880000
Cons ci ratio: 1.078288e-01	ci left: 4.339437e-04	ci right 4.837363e-04	k: 1320	n:2880000
KS ci ratio: 3.024072e-03	ci left: 3.679057e-01	ci right 3.690203e-01	k: 1061173	n:2880000
CYP27B1   2880000 perm   3753 sec   (767 perm/sec)   p_kst 3.684628e-01   p_cons 4.583333e-04   p_joint 1.380903e-03

Joint ci ratio: 6.200762e-02	ci left: 1.338141e-03	ci right 1.424109e-03	k: 3990	n:2890000
Cons ci ratio: 1.076253e-01	ci left: 4.341256e-04	ci right 4.838392e-04	k: 1325	n:2890000
KS ci ratio: 3.018810e-03	ci left: 3.679106e-01	ci right 3.690232e-01	k: 1064869	n:2890000
CYP27B1   2890000 perm   3777 sec   (765 perm/sec)   p_kst 3.684668e-01   p_cons 4.584775e-04   p_joint 1.380623e-03

Joint ci ratio: 6.186821e-02	ci left: 1.339638e-03	ci right 1.425501e-03	k: 4008	n:2900000
Cons ci ratio: 1.073423e-01	ci left: 4.349776e-04	ci right 4.846494e-04	k: 1332	n:2900000
KS ci ratio: 3.013593e-03	ci left: 3.679127e-01	ci right 3.690234e-01	k: 1068557	n:2900000
CYP27B1   2900000 perm   3801 sec   (763 perm/sec)   p_kst 3.684679e-01   p_cons 4.593103e-04   p_joint 1.382069e-03

Joint ci ratio: 6.172207e-02	ci left: 1.341462e-03	ci right 1.427232e-03	k: 4027	n:2910000
Cons ci ratio: 1.073022e-01	ci left: 4.338172e-04	ci right 4.833369e-04	k: 1333	n:2910000
KS ci ratio: 3.008697e-03	ci left: 3.678694e-01	ci right 3.689782e-01	k: 1072113	n:2910000
CYP27B1   2910000 perm   3825 sec   (761 perm/sec)   p_kst 3.684237e-01   p_cons 4.580756e-04   p_joint 1.383849e-03

Joint ci ratio: 6.163799e-02	ci left: 1.340577e-03	ci right 1.426170e-03	k: 4038	n:2920000
Cons ci ratio: 1.072620e-01	ci left: 4.326648e-04	ci right 4.820333e-04	k: 1334	n:2920000
KS ci ratio: 3.003534e-03	ci left: 3.678713e-01	ci right 3.689782e-01	k: 1075800	n:2920000
CYP27B1   2920000 perm   3850 sec   (758 perm/sec)   p_kst 3.684247e-01   p_cons 4.568493e-04   p_joint 1.382877e-03

Joint ci ratio: 6.150865e-02	ci left: 1.341715e-03	ci right 1.427194e-03	k: 4055	n:2930000
Cons ci ratio: 1.071818e-01	ci left: 4.318524e-04	ci right 4.810890e-04	k: 1336	n:2930000
KS ci ratio: 2.998262e-03	ci left: 3.678944e-01	ci right 3.689994e-01	k: 1079549	n:2930000
CYP27B1   2930000 perm   3874 sec   (756 perm/sec)   p_kst 3.684468e-01   p_cons 4.559727e-04   p_joint 1.383959e-03

Joint ci ratio: 6.143301e-02	ci left: 1.340500e-03	ci right 1.425793e-03	k: 4065	n:2940000
Cons ci ratio: 1.070219e-01	ci left: 4.317076e-04	ci right 4.808496e-04	k: 1340	n:2940000
KS ci ratio: 2.993135e-03	ci left: 3.678989e-01	ci right 3.690020e-01	k: 1083244	n:2940000
CYP27B1   2940000 perm   3898 sec   (754 perm/sec)   p_kst 3.684503e-01   p_cons 4.557823e-04   p_joint 1.382653e-03

Joint ci ratio: 6.136518e-02	ci left: 1.338960e-03	ci right 1.424058e-03	k: 4074	n:2950000
Cons ci ratio: 1.069024e-01	ci left: 4.312339e-04	ci right 4.802638e-04	k: 1343	n:2950000
KS ci ratio: 2.988259e-03	ci left: 3.678685e-01	ci right 3.689697e-01	k: 1086836	n:2950000
CYP27B1   2950000 perm   3922 sec   (752 perm/sec)   p_kst 3.684190e-01   p_cons 4.552542e-04   p_joint 1.381017e-03

Joint ci ratio: 6.121508e-02	ci left: 1.341090e-03	ci right 1.426107e-03	k: 4094	n:2960000
Cons ci ratio: 1.067041e-01	ci left: 4.314211e-04	ci right 4.803756e-04	k: 1348	n:2960000
KS ci ratio: 2.983009e-03	ci left: 3.679004e-01	ci right 3.689998e-01	k: 1090612	n:2960000
CYP27B1   2960000 perm   3947 sec   (750 perm/sec)   p_kst 3.684500e-01   p_cons 4.554054e-04   p_joint 1.383108e-03

Joint ci ratio: 6.110326e-02	ci left: 1.341548e-03	ci right 1.426433e-03	k: 4109	n:2970000
Cons ci ratio: 1.065462e-01	ci left: 4.312794e-04	ci right 4.801408e-04	k: 1352	n:2970000
KS ci ratio: 2.978027e-03	ci left: 3.678945e-01	ci right 3.689920e-01	k: 1094276	n:2970000
CYP27B1   2970000 perm   3971 sec   (748 perm/sec)   p_kst 3.684431e-01   p_cons 4.552189e-04   p_joint 1.383502e-03

Joint ci ratio: 6.101427e-02	ci left: 1.341011e-03	ci right 1.425734e-03	k: 4121	n:2980000
Cons ci ratio: 1.063499e-01	ci left: 4.314654e-04	ci right 4.802521e-04	k: 1357	n:2980000
KS ci ratio: 2.972941e-03	ci left: 3.679086e-01	ci right 3.690044e-01	k: 1098000	n:2980000
CYP27B1   2980000 perm   3996 sec   (746 perm/sec)   p_kst 3.684564e-01   p_cons 4.553691e-04   p_joint 1.382886e-03

Joint ci ratio: 6.085201e-02	ci left: 1.343772e-03	ci right 1.428436e-03	k: 4143	n:2990000
Cons ci ratio: 1.059992e-01	ci left: 4.329525e-04	ci right 4.817359e-04	k: 1366	n:2990000
KS ci ratio: 2.967830e-03	ci left: 3.679308e-01	ci right 3.690247e-01	k: 1101748	n:2990000
CYP27B1   2990000 perm   4020 sec   (744 perm/sec)   p_kst 3.684776e-01   p_cons 4.568562e-04   p_joint 1.385619e-03

Joint ci ratio: 6.075680e-02	ci left: 1.343560e-03	ci right 1.428074e-03	k: 4156	n:3000000
Cons ci ratio: 1.057673e-01	ci left: 4.334563e-04	ci right 4.821830e-04	k: 1372	n:3000000
KS ci ratio: 2.962885e-03	ci left: 3.679308e-01	ci right 3.690228e-01	k: 1105430	n:3000000
CYP27B1   3000000 perm   4045 sec   (742 perm/sec)   p_kst 3.684767e-01   p_cons 4.573333e-04   p_joint 1.385333e-03

Joint ci ratio: 6.153258e-02	ci left: 1.305072e-03	ci right 1.388250e-03	k: 4052	n:3010000
Cons ci ratio: 1.055752e-01	ci left: 4.336335e-04	ci right 4.822861e-04	k: 1377	n:3010000
KS ci ratio: 2.958105e-03	ci left: 3.679088e-01	ci right 3.689991e-01	k: 1109046	n:3010000
CYP27B1   3010000 perm   4069 sec   (740 perm/sec)   p_kst 3.684538e-01   p_cons 4.574751e-04   p_joint 1.346179e-03

Joint ci ratio: 6.141145e-02	ci left: 1.305968e-03	ci right 1.389033e-03	k: 4068	n:3020000
Cons ci ratio: 1.054223e-01	ci left: 4.334872e-04	ci right 4.820485e-04	k: 1381	n:3020000
KS ci ratio: 2.953314e-03	ci left: 3.678923e-01	ci right 3.689808e-01	k: 1112678	n:3020000
CYP27B1   3020000 perm   4094 sec   (738 perm/sec)   p_kst 3.684364e-01   p_cons 4.572848e-04   p_joint 1.347020e-03

Joint ci ratio: 6.132864e-02	ci left: 1.305232e-03	ci right 1.388135e-03	k: 4079	n:3030000
Cons ci ratio: 1.053081e-01	ci left: 4.330205e-04	ci right 4.814738e-04	k: 1384	n:3030000
KS ci ratio: 2.948458e-03	ci left: 3.678898e-01	ci right 3.689764e-01	k: 1116352	n:3030000
CYP27B1   3030000 perm   4118 sec   (736 perm/sec)   p_kst 3.684330e-01   p_cons 4.567657e-04   p_joint 1.346205e-03

Joint ci ratio: 6.120123e-02	ci left: 1.306445e-03	ci right 1.389246e-03	k: 4096	n:3040000
Cons ci ratio: 1.050430e-01	ci left: 4.338382e-04	ci right 4.822532e-04	k: 1391	n:3040000
KS ci ratio: 2.943597e-03	ci left: 3.678919e-01	ci right 3.689768e-01	k: 1120040	n:3040000
CYP27B1   3040000 perm   4144 sec   (734 perm/sec)   p_kst 3.684342e-01   p_cons 4.575658e-04   p_joint 1.347368e-03

Joint ci ratio: 6.113417e-02	ci left: 1.305067e-03	ci right 1.387687e-03	k: 4105	n:3050000
Cons ci ratio: 1.048548e-01	ci left: 4.340121e-04	ci right 4.823544e-04	k: 1396	n:3050000
KS ci ratio: 2.938577e-03	ci left: 3.679229e-01	ci right 3.690059e-01	k: 1123816	n:3050000
CYP27B1   3050000 perm   4169 sec   (732 perm/sec)   p_kst 3.684643e-01   p_cons 4.577049e-04   p_joint 1.345902e-03

Joint ci ratio: 6.101538e-02	ci left: 1.305951e-03	ci right 1.388461e-03	k: 4121	n:3060000
Cons ci ratio: 1.046303e-01	ci left: 4.345032e-04	ci right 4.827902e-04	k: 1402	n:3060000
KS ci ratio: 2.933802e-03	ci left: 3.679190e-01	ci right 3.690002e-01	k: 1127486	n:3060000
CYP27B1   3060000 perm   4194 sec   (730 perm/sec)   p_kst 3.684595e-01   p_cons 4.581699e-04   p_joint 1.346732e-03

Joint ci ratio: 6.090465e-02	ci left: 1.306509e-03	ci right 1.388899e-03	k: 4136	n:3070000
Cons ci ratio: 1.045187e-01	ci left: 4.340395e-04	ci right 4.822203e-04	k: 1405	n:3070000
KS ci ratio: 2.928949e-03	ci left: 3.679310e-01	ci right 3.690106e-01	k: 1131205	n:3070000
CYP27B1   3070000 perm   4219 sec   (728 perm/sec)   p_kst 3.684707e-01   p_cons 4.576547e-04   p_joint 1.347231e-03

Joint ci ratio: 6.080185e-02	ci left: 1.306743e-03	ci right 1.389004e-03	k: 4150	n:3080000
Cons ci ratio: 1.044445e-01	ci left: 4.332626e-04	ci right 4.813210e-04	k: 1407	n:3080000
KS ci ratio: 2.924266e-03	ci left: 3.679200e-01	ci right 3.689978e-01	k: 1134853	n:3080000
CYP27B1   3080000 perm   4244 sec   (726 perm/sec)   p_kst 3.684588e-01   p_cons 4.568182e-04   p_joint 1.347403e-03

Joint ci ratio: 6.064856e-02	ci left: 1.309207e-03	ci right 1.391408e-03	k: 4171	n:3090000
Cons ci ratio: 1.042964e-01	ci left: 4.331212e-04	ci right 4.810916e-04	k: 1411	n:3090000
KS ci ratio: 2.919627e-03	ci left: 3.679055e-01	ci right 3.689815e-01	k: 1138490	n:3090000
CYP27B1   3090000 perm   4269 sec   (724 perm/sec)   p_kst 3.684434e-01   p_cons 4.566343e-04   p_joint 1.349838e-03

Joint ci ratio: 6.058329e-02	ci left: 1.307843e-03	ci right 1.389867e-03	k: 4180	n:3100000
Cons ci ratio: 1.041490e-01	ci left: 4.329807e-04	ci right 4.808637e-04	k: 1415	n:3100000
KS ci ratio: 2.914900e-03	ci left: 3.679085e-01	ci right 3.689827e-01	k: 1142181	n:3100000
CYP27B1   3100000 perm   4295 sec   (722 perm/sec)   p_kst 3.684455e-01   p_cons 4.564516e-04   p_joint 1.348387e-03

Joint ci ratio: 6.054718e-02	ci left: 1.305221e-03	ci right 1.387030e-03	k: 4185	n:3110000
Cons ci ratio: 1.040022e-01	ci left: 4.328412e-04	ci right 4.806371e-04	k: 1419	n:3110000
KS ci ratio: 2.910330e-03	ci left: 3.678902e-01	ci right 3.689628e-01	k: 1145806	n:3110000
CYP27B1   3110000 perm   4320 sec   (720 perm/sec)   p_kst 3.684264e-01   p_cons 4.562701e-04   p_joint 1.345659e-03

Joint ci ratio: 6.041018e-02	ci left: 1.307036e-03	ci right 1.388766e-03	k: 4204	n:3120000
Cons ci ratio: 1.039291e-01	ci left: 4.320782e-04	ci right 4.797543e-04	k: 1421	n:3120000
KS ci ratio: 2.905707e-03	ci left: 3.678839e-01	ci right 3.689548e-01	k: 1149468	n:3120000
CYP27B1   3120000 perm   4346 sec   (718 perm/sec)   p_kst 3.684192e-01   p_cons 4.554487e-04   p_joint 1.347436e-03

Joint ci ratio: 6.035285e-02	ci left: 1.305377e-03	ci right 1.386924e-03	k: 4212	n:3130000
Cons ci ratio: 1.038197e-01	ci left: 4.316314e-04	ci right 4.792049e-04	k: 1424	n:3130000
KS ci ratio: 2.901008e-03	ci left: 3.678934e-01	ci right 3.689625e-01	k: 1153179	n:3130000
CYP27B1   3130000 perm   4371 sec   (716 perm/sec)   p_kst 3.684278e-01   p_cons 4.549521e-04   p_joint 1.345687e-03

Joint ci ratio: 6.025996e-02	ci left: 1.305297e-03	ci right 1.386709e-03	k: 4225	n:3140000
Cons ci ratio: 1.037106e-01	ci left: 4.311874e-04	ci right 4.786590e-04	k: 1427	n:3140000
KS ci ratio: 2.896516e-03	ci left: 3.678731e-01	ci right 3.689405e-01	k: 1156797	n:3140000
CYP27B1   3140000 perm   4397 sec   (714 perm/sec)   p_kst 3.684067e-01   p_cons 4.544586e-04   p_joint 1.345541e-03

Joint ci ratio: 6.016749e-02	ci left: 1.305219e-03	ci right 1.386496e-03	k: 4238	n:3150000
Cons ci ratio: 1.035295e-01	ci left: 4.313647e-04	ci right 4.787679e-04	k: 1432	n:3150000
KS ci ratio: 2.891994e-03	ci left: 3.678612e-01	ci right 3.689269e-01	k: 1160441	n:3150000
CYP27B1   3150000 perm   4422 sec   (712 perm/sec)   p_kst 3.683940e-01   p_cons 4.546032e-04   p_joint 1.345397e-03

Joint ci ratio: 6.005423e-02	ci left: 1.306075e-03	ci right 1.387248e-03	k: 4254	n:3160000
Cons ci ratio: 1.033493e-01	ci left: 4.315409e-04	ci right 4.788760e-04	k: 1437	n:3160000
KS ci ratio: 2.887473e-03	ci left: 3.678526e-01	ci right 3.689166e-01	k: 1164095	n:3160000
CYP27B1   3160000 perm   4448 sec   (710 perm/sec)   p_kst 3.683845e-01   p_cons 4.547468e-04   p_joint 1.346203e-03

Joint ci ratio: 5.994864e-02	ci left: 1.306616e-03	ci right 1.387675e-03	k: 4269	n:3170000
Cons ci ratio: 1.029562e-01	ci left: 4.335601e-04	ci right 4.809248e-04	k: 1448	n:3170000
KS ci ratio: 2.882911e-03	ci left: 3.678541e-01	ci right 3.689165e-01	k: 1167781	n:3170000
CYP27B1   3170000 perm   4474 sec   (709 perm/sec)   p_kst 3.683852e-01   p_cons 4.567823e-04   p_joint 1.346688e-03

Joint ci ratio: 5.733259e-02	ci left: 1.425833e-03	ci right 1.510299e-03	k: 4667	n:3180000
Cons ci ratio: 1.028853e-01	ci left: 4.328095e-04	ci right 4.800576e-04	k: 1450	n:3180000
KS ci ratio: 2.878275e-03	ci left: 3.678710e-01	ci right 3.689317e-01	k: 1171516	n:3180000
CYP27B1   3180000 perm   4499 sec   (707 perm/sec)   p_kst 3.684013e-01   p_cons 4.559748e-04   p_joint 1.467610e-03

Joint ci ratio: 5.754298e-02	ci left: 1.410857e-03	ci right 1.494754e-03	k: 4633	n:3190000
Cons ci ratio: 1.027438e-01	ci left: 4.326744e-04	ci right 4.798389e-04	k: 1454	n:3190000
KS ci ratio: 2.873836e-03	ci left: 3.678597e-01	ci right 3.689186e-01	k: 1175161	n:3190000
CYP27B1   3190000 perm   4525 sec   (705 perm/sec)   p_kst 3.683890e-01   p_cons 4.557994e-04   p_joint 1.452351e-03

Joint ci ratio: 5.805344e-02	ci left: 1.381501e-03	ci right 1.464405e-03	k: 4552	n:3200000
Cons ci ratio: 1.026380e-01	ci left: 4.322357e-04	ci right 4.793009e-04	k: 1457	n:3200000
KS ci ratio: 2.869428e-03	ci left: 3.678465e-01	ci right 3.689038e-01	k: 1178800	n:3200000
CYP27B1   3200000 perm   4551 sec   (703 perm/sec)   p_kst 3.683750e-01   p_cons 4.553125e-04   p_joint 1.422500e-03

Joint ci ratio: 5.798347e-02	ci left: 1.380575e-03	ci right 1.463320e-03	k: 4563	n:3210000
Cons ci ratio: 1.024275e-01	ci left: 4.327104e-04	ci right 4.797249e-04	k: 1463	n:3210000
KS ci ratio: 2.865043e-03	ci left: 3.678330e-01	ci right 3.688887e-01	k: 1182438	n:3210000
CYP27B1   3210000 perm   4577 sec   (701 perm/sec)   p_kst 3.683607e-01   p_cons 4.557632e-04   p_joint 1.421495e-03

Joint ci ratio: 5.788209e-02	ci left: 1.381184e-03	ci right 1.463816e-03	k: 4579	n:3220000
Cons ci ratio: 1.021834e-01	ci left: 4.334849e-04	ci right 4.804645e-04	k: 1470	n:3220000
KS ci ratio: 2.860433e-03	ci left: 3.678594e-01	ci right 3.689135e-01	k: 1186204	n:3220000
CYP27B1   3220000 perm   4603 sec   (700 perm/sec)   p_kst 3.683863e-01   p_cons 4.565217e-04   p_joint 1.422050e-03

Joint ci ratio: 5.856485e-02	ci left: 1.344568e-03	ci right 1.425990e-03	k: 4473	n:3230000
Cons ci ratio: 1.020102e-01	ci left: 4.336513e-04	ci right 4.805645e-04	k: 1475	n:3230000
KS ci ratio: 2.855954e-03	ci left: 3.678680e-01	ci right 3.689204e-01	k: 1189913	n:3230000
CYP27B1   3230000 perm   4630 sec   (698 perm/sec)   p_kst 3.683941e-01   p_cons 4.566563e-04   p_joint 1.384830e-03

Joint ci ratio: 5.659155e-02	ci left: 1.436851e-03	ci right 1.520834e-03	k: 4790	n:3240000
Cons ci ratio: 1.018378e-01	ci left: 4.338167e-04	ci right 4.806638e-04	k: 1480	n:3240000
KS ci ratio: 2.851661e-03	ci left: 3.678497e-01	ci right 3.689005e-01	k: 1193535	n:3240000
CYP27B1   3240000 perm   4656 sec   (696 perm/sec)   p_kst 3.683750e-01   p_cons 4.567901e-04   p_joint 1.478395e-03

Joint ci ratio: 5.649728e-02	ci left: 1.437283e-03	ci right 1.521147e-03	k: 4806	n:3250000
Cons ci ratio: 1.017349e-01	ci left: 4.333815e-04	ci right 4.801314e-04	k: 1483	n:3250000
KS ci ratio: 2.847319e-03	ci left: 3.678426e-01	ci right 3.688918e-01	k: 1197193	n:3250000
CYP27B1   3250000 perm   4682 sec   (694 perm/sec)   p_kst 3.683671e-01   p_cons 4.563077e-04   p_joint 1.478769e-03

Joint ci ratio: 5.642105e-02	ci left: 1.436806e-03	ci right 1.520525e-03	k: 4819	n:3260000
Cons ci ratio: 1.015981e-01	ci left: 4.332479e-04	ci right 4.799168e-04	k: 1487	n:3260000
KS ci ratio: 2.842987e-03	ci left: 3.678371e-01	ci right 3.688846e-01	k: 1200856	n:3260000
CYP27B1   3260000 perm   4709 sec   (692 perm/sec)   p_kst 3.683607e-01   p_cons 4.561350e-04   p_joint 1.478221e-03

Joint ci ratio: 5.634514e-02	ci left: 1.436331e-03	ci right 1.519907e-03	k: 4832	n:3270000
Cons ci ratio: 1.014618e-01	ci left: 4.331151e-04	ci right 4.797035e-04	k: 1491	n:3270000
KS ci ratio: 2.838509e-03	ci left: 3.678588e-01	ci right 3.689047e-01	k: 1204608	n:3270000
CYP27B1   3270000 perm   4735 sec   (691 perm/sec)   p_kst 3.683817e-01   p_cons 4.559633e-04   p_joint 1.477676e-03

Joint ci ratio: 5.622887e-02	ci left: 1.437964e-03	ci right 1.521456e-03	k: 4852	n:3280000
Cons ci ratio: 1.013600e-01	ci left: 4.326861e-04	ci right 4.791788e-04	k: 1494	n:3280000
KS ci ratio: 2.834145e-03	ci left: 3.678651e-01	ci right 3.689095e-01	k: 1208310	n:3280000
CYP27B1   3280000 perm   4762 sec   (689 perm/sec)   p_kst 3.683872e-01   p_cons 4.554878e-04   p_joint 1.479268e-03

Joint ci ratio: 5.614217e-02	ci left: 1.438089e-03	ci right 1.521455e-03	k: 4867	n:3290000
Cons ci ratio: 1.012923e-01	ci left: 4.319634e-04	ci right 4.783457e-04	k: 1496	n:3290000
KS ci ratio: 2.829905e-03	ci left: 3.678544e-01	ci right 3.688972e-01	k: 1211956	n:3290000
CYP27B1   3290000 perm   4789 sec   (687 perm/sec)   p_kst 3.683757e-01   p_cons 4.547112e-04   p_joint 1.479331e-03

Joint ci ratio: 5.610768e-02	ci left: 1.435523e-03	ci right 1.518689e-03	k: 4873	n:3300000
Cons ci ratio: 1.011572e-01	ci left: 4.318359e-04	ci right 4.781389e-04	k: 1500	n:3300000
KS ci ratio: 2.825626e-03	ci left: 3.678532e-01	ci right 3.688943e-01	k: 1215633	n:3300000
CYP27B1   3300000 perm   4816 sec   (685 perm/sec)   p_kst 3.683736e-01   p_cons 4.545455e-04   p_joint 1.476667e-03

Joint ci ratio: 5.598714e-02	ci left: 1.437442e-03	ci right 1.520534e-03	k: 4894	n:3310000
Cons ci ratio: 1.008887e-01	ci left: 4.328871e-04	ci right 4.791723e-04	k: 1508	n:3310000
KS ci ratio: 2.821255e-03	ci left: 3.678703e-01	ci right 3.689099e-01	k: 1219371	n:3310000
CYP27B1   3310000 perm   4843 sec   (684 perm/sec)   p_kst 3.683900e-01   p_cons 4.555891e-04   p_joint 1.478550e-03

Joint ci ratio: 5.587876e-02	ci left: 1.438755e-03	ci right 1.521757e-03	k: 4913	n:3320000
Cons ci ratio: 1.007552e-01	ci left: 4.327577e-04	ci right 4.789642e-04	k: 1512	n:3320000
KS ci ratio: 2.817058e-03	ci left: 3.678621e-01	ci right 3.689002e-01	k: 1223025	n:3320000
CYP27B1   3320000 perm   4869 sec   (682 perm/sec)   p_kst 3.683810e-01   p_cons 4.554217e-04   p_joint 1.479819e-03

Joint ci ratio: 5.578234e-02	ci left: 1.439469e-03	ci right 1.522363e-03	k: 4930	n:3330000
Cons ci ratio: 1.005891e-01	ci left: 4.329218e-04	ci right 4.790652e-04	k: 1517	n:3330000
KS ci ratio: 2.812991e-03	ci left: 3.678353e-01	ci right 3.688718e-01	k: 1226617	n:3330000
CYP27B1   3330000 perm   4896 sec   (680 perm/sec)   p_kst 3.683535e-01   p_cons 4.555556e-04   p_joint 1.480480e-03

Joint ci ratio: 5.573720e-02	ci left: 1.437521e-03	ci right 1.520234e-03	k: 4938	n:3340000
Cons ci ratio: 1.003909e-01	ci left: 4.333769e-04	ci right 4.794724e-04	k: 1523	n:3340000
KS ci ratio: 2.808713e-03	ci left: 3.678467e-01	ci right 3.688816e-01	k: 1230336	n:3340000
CYP27B1   3340000 perm   4923 sec   (678 perm/sec)   p_kst 3.683641e-01   p_cons 4.559880e-04   p_joint 1.478443e-03

Joint ci ratio: 5.566401e-02	ci left: 1.437056e-03	ci right 1.519630e-03	k: 4951	n:3350000
Cons ci ratio: 1.002594e-01	ci left: 4.332473e-04	ci right 4.792651e-04	k: 1527	n:3350000
KS ci ratio: 2.804375e-03	ci left: 3.678712e-01	ci right 3.689046e-01	k: 1234099	n:3350000
CYP27B1   3350000 perm   4950 sec   (677 perm/sec)   p_kst 3.683878e-01   p_cons 4.558209e-04   p_joint 1.477910e-03

Joint ci ratio: 5.559110e-02	ci left: 1.436594e-03	ci right 1.519031e-03	k: 4964	n:3360000
Cons ci ratio: 1.000631e-01	ci left: 4.336989e-04	ci right 4.796692e-04	k: 1533	n:3360000
KS ci ratio: 2.800256e-03	ci left: 3.678625e-01	ci right 3.688943e-01	k: 1237751	n:3360000
CYP27B1   3360000 perm   4977 sec   (675 perm/sec)   p_kst 3.683783e-01   p_cons 4.562500e-04   p_joint 1.477381e-03

Joint ci ratio: 5.547943e-02	ci left: 1.438184e-03	ci right 1.520540e-03	k: 4984	n:3370000
Cons ci ratio: 9.999802e-02	ci left: 4.329905e-04	ci right 4.788541e-04	k: 1535	n:3370000
KS ci ratio: 2.796137e-03	ci left: 3.678568e-01	ci right 3.688871e-01	k: 1241413	n:3370000
CYP27B1   3370000 perm   5004 sec   (673 perm/sec)   p_kst 3.683718e-01   p_cons 4.554896e-04   p_joint 1.478932e-03

Outputting figure to mutsig2_images.part000000000046/CYP27B1.3_1563_3370000_0.36837_0.00045549_0.0014789.png
                gene_name: CYP27B1
               theta_stop: 0.100 
                    nperm: 3370000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.00046 
      ci_cons_bounds_left: 0.00043 
     ci_cons_bounds_right: 0.00048 
                  p_joint: 0.0015 
     ci_joint_bounds_left: 0.0014 
    ci_joint_bounds_right: 0.0015 

Current progress: 64 percent done.
CYP2J2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.198465e-02	ci left: 3.529698e-01	ci right 3.719104e-01	k: 3624	n:10000
Cons ci ratio: 1.777991e-02	ci left: 8.218818e-01	ci right 8.367259e-01	k: 8294	n:10000
KS ci ratio: 6.871987e-02	ci left: 2.369909e-01	ci right 2.539576e-01	k: 2454	n:10000
CYP2J2   10000 perm   2 sec   (6085 perm/sec)   p_kst 2.454000e-01   p_cons 8.294000e-01   p_joint 3.624000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2J2.3_1545_10000_0.2454_0.8294_0.3624.png
                gene_name: CYP2J2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 65 percent done.
CYP2S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.739085e-02	ci left: 6.625985e-01	ci right 6.811013e-01	k: 6719	n:10000
Cons ci ratio: 3.775496e-02	ci left: 5.088528e-01	ci right 5.285363e-01	k: 5187	n:10000
KS ci ratio: 2.982611e-02	ci left: 6.237671e-01	ci right 6.427552e-01	k: 6333	n:10000
CYP2S1   10000 perm   2 sec   (6182 perm/sec)   p_kst 6.333000e-01   p_cons 5.187000e-01   p_joint 6.719000e-01

Outputting figure to mutsig2_images.part000000000046/CYP2S1.3_1551_10000_0.6333_0.5187_0.6719.png
                gene_name: CYP2S1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 67 percent done.
CYP39A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.792043e-02	ci left: 6.540417e-01	ci right 6.726631e-01	k: 6634	n:10000
Cons ci ratio: 2.610159e-02	ci left: 6.836528e-01	ci right 7.018348e-01	k: 6928	n:10000
KS ci ratio: 4.612326e-02	ci left: 4.096033e-01	ci right 4.290437e-01	k: 4193	n:10000
CYP39A1   10000 perm   2 sec   (5960 perm/sec)   p_kst 4.193000e-01   p_cons 6.928000e-01   p_joint 6.634000e-01

Outputting figure to mutsig2_images.part000000000046/CYP39A1.3_1458_10000_0.4193_0.6928_0.6634.png
                gene_name: CYP39A1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 68 percent done.
CYP3A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.723386e-02	ci left: 1.329609e-01	ci right 1.466496e-01	k: 1397	n:10000
Cons ci ratio: 1.461584e-01	ci left: 6.217631e-02	ci right 7.207768e-02	k: 670	n:10000
KS ci ratio: 5.524235e-02	ci left: 3.255497e-01	ci right 3.441466e-01	k: 3348	n:10000
CYP3A5   10000 perm   2 sec   (6166 perm/sec)   p_kst 3.348000e-01   p_cons 6.700000e-02   p_joint 1.397000e-01

Joint ci ratio: 7.729207e-02	ci left: 1.095285e-01	ci right 1.183841e-01	k: 2278	n:20000
Cons ci ratio: 1.073971e-01	ci left: 5.908656e-02	ci right 6.584133e-02	k: 1248	n:20000
KS ci ratio: 3.976983e-02	ci left: 3.203995e-01	ci right 3.334508e-01	k: 6538	n:20000
CYP3A5   20000 perm   4 sec   (5457 perm/sec)   p_kst 3.269000e-01   p_cons 6.240000e-02   p_joint 1.139000e-01

Joint ci ratio: 8.585932e-02	ci left: 6.217058e-02	ci right 6.778070e-02	k: 1948	n:30000
Cons ci ratio: 8.762768e-02	ci left: 5.978667e-02	ci right 6.529843e-02	k: 1875	n:30000
KS ci ratio: 3.239953e-02	ci left: 3.225880e-01	ci right 3.332453e-01	k: 9837	n:30000
CYP3A5   30000 perm   6 sec   (5180 perm/sec)   p_kst 3.279000e-01   p_cons 6.250000e-02   p_joint 6.493333e-02

Outputting figure to mutsig2_images.part000000000046/CYP3A5.3_1561_30000_0.3279_0.0625_0.064933.png
                gene_name: CYP3A5
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.068 

Current progress: 70 percent done.
CYP4A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.473772e-02	ci left: 8.695851e-01	ci right 8.825950e-01	k: 8762	n:10000
KS ci ratio: 1.011016e-02	ci left: 9.327839e-01	ci right 9.423592e-01	k: 9377	n:10000
CYP4A11   10000 perm   2 sec   (6197 perm/sec)   p_kst 9.377000e-01   p_cons 8.762000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYP4A11.3_1608_10000_0.9377_0.8762_1.png
                gene_name: CYP4A11
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
CYP4F3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.260762e-02	ci left: 7.417955e-01	ci right 7.588585e-01	k: 7504	n:10000
Cons ci ratio: 4.926359e-02	ci left: 3.780349e-01	ci right 3.972306e-01	k: 3876	n:10000
KS ci ratio: 5.483237e-03	ci left: 9.780229e-01	ci right 9.834920e-01	k: 9809	n:10000
CYP4F3   10000 perm   1 sec   (6745 perm/sec)   p_kst 9.809000e-01   p_cons 3.876000e-01   p_joint 7.504000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4F3.3_1611_10000_0.9809_0.3876_0.7504.png
                gene_name: CYP4F3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 73 percent done.
CYP4V2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.752422e-02	ci left: 3.951583e-01	ci right 4.144971e-01	k: 4048	n:10000
Cons ci ratio: 6.005007e-02	ci left: 2.897392e-01	ci right 3.077782e-01	k: 2987	n:10000
KS ci ratio: 5.017843e-02	ci left: 3.693784e-01	ci right 3.884922e-01	k: 3789	n:10000
CYP4V2   10000 perm   2 sec   (6301 perm/sec)   p_kst 3.789000e-01   p_cons 2.987000e-01   p_joint 4.048000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4V2.3_1622_10000_0.3789_0.2987_0.4048.png
                gene_name: CYP4V2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 74 percent done.
CYP4Z1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.386771e-02	ci left: 4.341296e-01	ci right 4.537031e-01	k: 4439	n:10000
KS ci ratio: 2.726672e-02	ci left: 6.646124e-01	ci right 6.830863e-01	k: 6739	n:10000
CYP4Z1   10000 perm   2 sec   (6234 perm/sec)   p_kst 6.739000e-01   p_cons 4.439000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYP4Z1.3_1566_10000_0.6739_0.4439_1.png
                gene_name: CYP4Z1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
CYP51A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.403001e-03	ci left: 9.707953e-01	ci right 9.771245e-01	k: 9741	n:10000
Cons ci ratio: 2.106120e-02	ci left: 7.676987e-01	ci right 7.841402e-01	k: 7760	n:10000
KS ci ratio: 8.886211e-03	ci left: 9.467940e-01	ci right 9.553408e-01	k: 9512	n:10000
CYP51A1   10000 perm   2 sec   (6020 perm/sec)   p_kst 9.512000e-01   p_cons 7.760000e-01   p_joint 9.741000e-01

Outputting figure to mutsig2_images.part000000000046/CYP51A1.3_1570_10000_0.9512_0.776_0.9741.png
                gene_name: CYP51A1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 77 percent done.
CYP8B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.534834e-02	ci left: 2.049112e-01	ci right 2.210563e-01	k: 2129	n:10000
Cons ci ratio: 1.236641e-01	ci left: 8.562704e-02	ci right 9.701233e-02	k: 912	n:10000
KS ci ratio: 4.720036e-02	ci left: 3.984451e-01	ci right 4.178085e-01	k: 4081	n:10000
CYP8B1   10000 perm   2 sec   (6538 perm/sec)   p_kst 4.081000e-01   p_cons 9.120000e-02   p_joint 2.129000e-01

Joint ci ratio: 4.946752e-02	ci left: 2.330036e-01	ci right 2.448724e-01	k: 4778	n:20000
Cons ci ratio: 8.912054e-02	ci left: 8.425585e-02	ci right 9.216434e-02	k: 1763	n:20000
KS ci ratio: 3.333741e-02	ci left: 4.018757e-01	ci right 4.155509e-01	k: 8174	n:20000
CYP8B1   20000 perm   3 sec   (5798 perm/sec)   p_kst 4.087000e-01   p_cons 8.815000e-02   p_joint 2.389000e-01

Outputting figure to mutsig2_images.part000000000046/CYP8B1.3_1510_20000_0.4087_0.08815_0.2389.png
                gene_name: CYP8B1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 79 percent done.
CYSLTR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.269208e-02	ci left: 7.403801e-01	ci right 7.574747e-01	k: 7490	n:10000
Cons ci ratio: 5.073728e-02	ci left: 3.642059e-01	ci right 3.832677e-01	k: 3737	n:10000
KS ci ratio: 1.510206e-02	ci left: 8.640678e-01	ci right 8.773155e-01	k: 8708	n:10000
CYSLTR1   10000 perm   2 sec   (6475 perm/sec)   p_kst 8.708000e-01   p_cons 3.737000e-01   p_joint 7.490000e-01

Outputting figure to mutsig2_images.part000000000046/CYSLTR1.3_1018_10000_0.8708_0.3737_0.749.png
                gene_name: CYSLTR1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 80 percent done.
CXorf65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.600319e-01	ci left: 5.205444e-02	ci right 6.120599e-02	k: 565	n:10000
Cons ci ratio: 1.879096e-01	ci left: 3.777051e-02	ci right 4.569926e-02	k: 416	n:10000
KS ci ratio: 4.293816e-02	ci left: 4.447053e-01	ci right 4.643212e-01	k: 4545	n:10000
CXorf65   10000 perm   1 sec   (6966 perm/sec)   p_kst 4.545000e-01   p_cons 4.160000e-02   p_joint 5.650000e-02

Joint ci ratio: 4.532994e-02	ci left: 2.659406e-01	ci right 2.783257e-01	k: 5442	n:20000
Cons ci ratio: 1.317256e-01	ci left: 3.960069e-02	ci right 4.523332e-02	k: 847	n:20000
KS ci ratio: 3.051795e-02	ci left: 4.450849e-01	ci right 4.589291e-01	k: 9040	n:20000
CXorf65   20000 perm   3 sec   (6114 perm/sec)   p_kst 4.520000e-01   p_cons 4.235000e-02   p_joint 2.721000e-01

Joint ci ratio: 2.655793e-02	ci left: 4.150717e-01	ci right 4.262770e-01	k: 12620	n:30000
Cons ci ratio: 1.062099e-01	ci left: 4.112198e-02	ci right 4.576696e-02	k: 1302	n:30000
KS ci ratio: 2.490677e-02	ci left: 4.465895e-01	ci right 4.578864e-01	k: 13567	n:30000
CXorf65   30000 perm   5 sec   (5814 perm/sec)   p_kst 4.522333e-01   p_cons 4.340000e-02   p_joint 4.206667e-01

Joint ci ratio: 6.611563e-03	ci left: 8.948407e-01	ci right 9.008014e-01	k: 35914	n:40000
Cons ci ratio: 9.212873e-02	ci left: 4.130170e-02	ci right 4.531495e-02	k: 1731	n:40000
KS ci ratio: 2.157274e-02	ci left: 4.472887e-01	ci right 4.570683e-01	k: 18087	n:40000
CXorf65   40000 perm   7 sec   (5610 perm/sec)   p_kst 4.521750e-01   p_cons 4.327500e-02   p_joint 8.978500e-01

Outputting figure to mutsig2_images.part000000000046/CXorf65.2_576_40000_0.45217_0.043275_0.89785.png
                gene_name: CXorf65
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 82 percent done.
CYB5D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.897407e-02	ci left: 8.023742e-01	ci right 8.178447e-01	k: 8102	n:10000
Cons ci ratio: 3.717692e-02	ci left: 5.165574e-01	ci right 5.362273e-01	k: 5264	n:10000
KS ci ratio: 3.964342e-02	ci left: 4.844537e-01	ci right 5.041496e-01	k: 4943	n:10000
CYB5D1   10000 perm   1 sec   (6915 perm/sec)   p_kst 4.943000e-01   p_cons 5.264000e-01   p_joint 8.102000e-01

Outputting figure to mutsig2_images.part000000000046/CYB5D1.2_703_10000_0.4943_0.5264_0.8102.png
                gene_name: CYB5D1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 83 percent done.
CYB5R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.854123e-02	ci left: 4.985503e-01	ci right 5.182448e-01	k: 5084	n:10000
KS ci ratio: 3.389067e-02	ci left: 5.624330e-01	ci right 5.819249e-01	k: 5722	n:10000
CYB5R2   10000 perm   1 sec   (6727 perm/sec)   p_kst 5.722000e-01   p_cons 5.084000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYB5R2.2_863_10000_0.5722_0.5084_1.png
                gene_name: CYB5R2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
CYBASC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.557831e-02	ci left: 4.153838e-01	ci right 4.348599e-01	k: 4251	n:10000
Cons ci ratio: 4.885111e-02	ci left: 3.820160e-01	ci right 4.012472e-01	k: 3916	n:10000
KS ci ratio: 4.698613e-02	ci left: 4.006365e-01	ci right 4.200158e-01	k: 4103	n:10000
CYBASC3   10000 perm   1 sec   (6775 perm/sec)   p_kst 4.103000e-01   p_cons 3.916000e-01   p_joint 4.251000e-01

Outputting figure to mutsig2_images.part000000000046/CYBASC3.2_804_10000_0.4103_0.3916_0.4251.png
                gene_name: CYBASC3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 86 percent done.
CYBB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.408115e-02	ci left: 7.171434e-01	ci right 7.347248e-01	k: 7260	n:10000
Cons ci ratio: 2.488138e-02	ci left: 7.038210e-01	ci right 7.216550e-01	k: 7128	n:10000
KS ci ratio: 6.816792e-02	ci left: 2.399555e-01	ci right 2.569912e-01	k: 2484	n:10000
CYBB   10000 perm   2 sec   (6273 perm/sec)   p_kst 2.484000e-01   p_cons 7.128000e-01   p_joint 7.260000e-01

Outputting figure to mutsig2_images.part000000000046/CYBB.2_1765_10000_0.2484_0.7128_0.726.png
                gene_name: CYBB
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 88 percent done.
CYP17A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.885856e-02	ci left: 4.944505e-01	ci right 5.141470e-01	k: 5043	n:10000
KS ci ratio: 5.432516e-02	ci left: 3.329974e-01	ci right 3.516945e-01	k: 3423	n:10000
CYP17A1   10000 perm   2 sec   (6387 perm/sec)   p_kst 3.423000e-01   p_cons 5.043000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000046/CYP17A1.2_1559_10000_0.3423_0.5043_1.png
                gene_name: CYP17A1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
CYP20A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.286896e-02	ci left: 4.455036e-01	ci right 4.651224e-01	k: 4553	n:10000
Cons ci ratio: 2.064893e-02	ci left: 7.745865e-01	ci right 7.908485e-01	k: 7828	n:10000
KS ci ratio: 1.105409e-01	ci left: 1.054923e-01	ci right 1.179349e-01	k: 1116	n:10000
CYP20A1   10000 perm   2 sec   (6638 perm/sec)   p_kst 1.116000e-01   p_cons 7.828000e-01   p_joint 4.553000e-01

Joint ci ratio: 4.391970e-02	ci left: 2.785518e-01	ci right 2.911108e-01	k: 5696	n:20000
Cons ci ratio: 1.519625e-02	ci left: 7.629941e-01	ci right 7.747277e-01	k: 15378	n:20000
KS ci ratio: 7.880247e-02	ci left: 1.057447e-01	ci right 1.144690e-01	k: 2201	n:20000
CYP20A1   20000 perm   3 sec   (5849 perm/sec)   p_kst 1.100500e-01   p_cons 7.689000e-01   p_joint 2.848000e-01

Outputting figure to mutsig2_images.part000000000046/CYP20A1.2_1441_20000_0.11005_0.7689_0.2848.png
                gene_name: CYP20A1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 91 percent done.
CYP2C18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.961964e-02	ci left: 4.847535e-01	ci right 5.044496e-01	k: 4946	n:10000
KS ci ratio: 1.642256e-01	ci left: 4.945836e-02	ci right 5.840374e-02	k: 538	n:10000
CYP2C18   10000 perm   2 sec   (6608 perm/sec)   p_kst 5.380000e-02   p_cons 4.946000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 2.707271e-02	ci left: 5.047961e-01	ci right 5.187005e-01	k: 10235	n:20000
KS ci ratio: 1.162988e-01	ci left: 5.061589e-02	ci right 5.691464e-02	k: 1074	n:20000
CYP2C18   20000 perm   3 sec   (5813 perm/sec)   p_kst 5.370000e-02   p_cons 5.117500e-01   p_joint 1

Joint ci ratio: 1.147745e-02	ci left: 7.908235e-01	ci right 7.999859e-01	k: 23863	n:30000
Cons ci ratio: 2.217693e-02	ci left: 5.044591e-01	ci right 5.158056e-01	k: 15304	n:30000
KS ci ratio: 9.528656e-02	ci left: 5.084996e-02	ci right 5.597030e-02	k: 1601	n:30000
CYP2C18   30000 perm   5 sec   (5515 perm/sec)   p_kst 5.336667e-02   p_cons 5.101333e-01   p_joint 7.954333e-01

Outputting figure to mutsig2_images.part000000000046/CYP2C18.2_1509_30000_0.053367_0.51013_0.79543.png
                gene_name: CYP2C18
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 92 percent done.
CYP3A43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.732284e-03	ci left: 9.484598e-01	ci right 9.568740e-01	k: 9528	n:10000
Cons ci ratio: 2.380295e-02	ci left: 7.217883e-01	ci right 7.392772e-01	k: 7306	n:10000
KS ci ratio: 3.050389e-02	ci left: 6.132157e-01	ci right 6.323128e-01	k: 6228	n:10000
CYP3A43   10000 perm   2 sec   (6613 perm/sec)   p_kst 6.228000e-01   p_cons 7.306000e-01   p_joint 9.528000e-01

Outputting figure to mutsig2_images.part000000000046/CYP3A43.2_1567_10000_0.6228_0.7306_0.9528.png
                gene_name: CYP3A43
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 94 percent done.
CYP46A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.380712e-02	ci left: 1.719241e-01	ci right 1.870631e-01	k: 1794	n:10000
Cons ci ratio: 8.885890e-02	ci left: 1.556131e-01	ci right 1.701838e-01	k: 1628	n:10000
KS ci ratio: 3.455982e-02	ci left: 5.528102e-01	ci right 5.723533e-01	k: 5626	n:10000
CYP46A1   10000 perm   2 sec   (6496 perm/sec)   p_kst 5.626000e-01   p_cons 1.628000e-01   p_joint 1.794000e-01

Outputting figure to mutsig2_images.part000000000046/CYP46A1.2_1563_10000_0.5626_0.1628_0.1794.png
                gene_name: CYP46A1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 95 percent done.
CYP4A22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.396856e-02	ci left: 2.641865e-01	ci right 2.817460e-01	k: 2729	n:10000
Cons ci ratio: 5.339733e-02	ci left: 3.407457e-01	ci right 3.595416e-01	k: 3501	n:10000
KS ci ratio: 1.061502e-01	ci left: 1.135945e-01	ci right 1.264278e-01	k: 1199	n:10000
CYP4A22   10000 perm   2 sec   (6329 perm/sec)   p_kst 1.199000e-01   p_cons 3.501000e-01   p_joint 2.729000e-01

Joint ci ratio: 2.125497e-02	ci left: 6.229642e-01	ci right 6.363981e-01	k: 12594	n:20000
Cons ci ratio: 3.757162e-02	ci left: 3.457761e-01	ci right 3.590668e-01	k: 7048	n:20000
KS ci ratio: 7.476036e-02	ci left: 1.163138e-01	ci right 1.253968e-01	k: 2416	n:20000
CYP4A22   20000 perm   4 sec   (5613 perm/sec)   p_kst 1.208000e-01   p_cons 3.524000e-01   p_joint 6.297000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4A22.2_1608_20000_0.1208_0.3524_0.6297.png
                gene_name: CYP4A22
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 97 percent done.
CYP4F11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.462512e-03	ci left: 9.849077e-01	ci right 9.894019e-01	k: 9873	n:10000
Cons ci ratio: 3.625527e-02	ci left: 5.290697e-01	ci right 5.487076e-01	k: 5389	n:10000
KS ci ratio: 3.329228e-02	ci left: 5.711569e-01	ci right 5.905960e-01	k: 5809	n:10000
CYP4F11   10000 perm   2 sec   (6310 perm/sec)   p_kst 5.809000e-01   p_cons 5.389000e-01   p_joint 9.873000e-01

Outputting figure to mutsig2_images.part000000000046/CYP4F11.2_1623_10000_0.5809_0.5389_0.9873.png
                gene_name: CYP4F11
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 98 percent done.
CYR61
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.946939e-02	ci left: 4.866526e-01	ci right 5.063494e-01	k: 4965	n:10000
Cons ci ratio: 1.145032e-01	ci left: 9.886244e-02	ci right 1.109688e-01	k: 1048	n:10000
KS ci ratio: 2.637780e-02	ci left: 6.791178e-01	ci right 6.973724e-01	k: 6883	n:10000
CYR61   10000 perm   2 sec   (6538 perm/sec)   p_kst 6.883000e-01   p_cons 1.048000e-01   p_joint 4.965000e-01

Joint ci ratio: 2.305763e-02	ci left: 5.841484e-01	ci right 5.978251e-01	k: 11820	n:20000
Cons ci ratio: 8.011688e-02	ci left: 1.026010e-01	ci right 1.112137e-01	k: 2137	n:20000
KS ci ratio: 1.862643e-02	ci left: 6.824319e-01	ci right 6.953131e-01	k: 13778	n:20000
CYR61   20000 perm   4 sec   (5484 perm/sec)   p_kst 6.889000e-01   p_cons 1.068500e-01   p_joint 5.910000e-01

Outputting figure to mutsig2_images.part000000000046/CYR61.2_1166_20000_0.6889_0.10685_0.591.png
                gene_name: CYR61
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000046
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 46 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1711>
Subject: Job 9893903: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1711>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000047> was used as the working directory.
Started at Sat Oct  6 00:04:46 2012
Results reported at Sat Oct  6 00:18:00 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000047.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000047.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 47  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000047.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    802.97 sec.
    Max Memory :      3456 MB
    Max Swap   :      5886 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
47
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 47
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 47: processing genes 4148 - 4237
Calculating significance of each gene.
Using projection method.
4148	CYTH1	7.183225e-01
4149	CYTH2	8.369468e-01
4150	CYTH3	5.933248e-01
4151	CYTH4	1
4152	CYTIP	5.038631e-01
4153	CYTL1	9.132747e-04
4154	CYTSA	9.281861e-01
4155	CYTSB	9.818998e-01
4156	CYYR1	1
4157	CYorf15A	1
4158	CYorf15B	1
4159	D2HGDH	1
4160	D4S234E	4.069344e-01
4161	DAAM1	9.585638e-01
4162	DAAM2	1.531769e-01
4163	DAB1	5.875928e-03
4164	DAB2	1.147441e-01
4165	DAB2IP	5.937764e-01
4166	DACH1	9.018554e-01
4167	DACH2	5.195377e-05
4168	DACT1	5.931734e-01
4169	DAD1	5.449752e-02
4170	DAG1	6.980921e-01
4171	DAGLA	9.759990e-01
4172	DAGLB	6.767622e-01
4173	DAK	4.752526e-01
4174	DALRD3	6.749052e-01
4175	DAND5	1
4176	DAO	3.074415e-02
4177	DAOA	4.667073e-01
4178	DAP	4.263268e-01
4179	DAP3	1
4180	DAPK1	1.319231e-02
4181	DAPK2	1
4182	DAPK3	9.611062e-01
4183	DAPL1	1
4184	DAPP1	5.254481e-01
4185	DARC	3.544504e-01
4186	DARS	9.104877e-02
4187	DARS2	4.008557e-01
4188	DAXX	8.909186e-01
4189	DAZAP1	8.701149e-01
4190	DAZAP2	1
4191	DAZL	1.717760e-01
4192	DBC1	3.278813e-02
4193	DBF4	4.959346e-01
4194	DBF4B	6.902714e-01
4195	DBH	2.766124e-01
4196	DBI	1
4197	DBN1	9.903619e-01
4198	DBNDD1	5.163990e-01
4199	DBNDD2	1
4200	DBNL	7.372127e-01
4201	DBP	5.992094e-01
4202	DBR1	4.085273e-01
4203	DBT	1
4204	DBX1	8.654031e-01
4205	DBX2	7.719518e-02
4206	DCAF10	8.687050e-01
4207	DCAF11	7.881188e-01
4208	DCAF12	7.918817e-01
4209	DCAF12L1	4.759329e-01
4210	DCAF12L2	2.471077e-01
4211	DCAF13	4.168041e-01
4212	DCAF15	9.340050e-01
4213	DCAF16	1
4214	DCAF17	5.021612e-01
4215	DCAF4	4.188114e-01
4216	DCAF4L1	4.247115e-01
In gene DCAF4L2 the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 1192    n = 1	mu =   2.96e-07
4217	DCAF4L2	9.442589e-05
4218	DCAF5	9.474203e-01
4219	DCAF6	6.191634e-01
4220	DCAF7	2.736697e-01
4221	DCAF8	6.401284e-01
4222	DCAF8L1	3.932671e-01
4223	DCAKD	7.287308e-01
4224	DCBLD1	8.618542e-01
4225	DCBLD2	8.303128e-01
4226	DCC	1.192708e-02
4227	DCD	3.043558e-01
4228	DCDC1	1.101518e-02
4229	DCDC2	2.282444e-01
4230	DCDC2B	5.466808e-01
4231	DCHS1	6.101578e-01
4232	DCHS2	5.924441e-04
4233	DCI	1
4234	DCK	3.616085e-01
4235	DCLK1	3.442738e-03
4236	DCLK2	4.148295e-01
4237	DCLK3	3.609319e-01
Done

Running MutSig 2:
Scatter job 47: processing genes 4148 - 4237
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DCHS2
Processing conservation and coverage...
90% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.118569e-01	ci left: 2.958536e-02	ci right 3.669001e-02	k: 330	n:10000
Cons ci ratio: 2.162371e-02	ci left: 7.582837e-01	ci right 7.749607e-01	k: 7667	n:10000
KS ci ratio: 5.223374e-01	ci left: 4.145961e-03	ci right 7.153063e-03	k: 55	n:10000
DCHS2   10000 perm   4 sec   (2427 perm/sec)   p_kst 5.500000e-03   p_cons 7.667000e-01   p_joint 3.300000e-02

Joint ci ratio: 1.930428e-01	ci left: 1.824762e-02	ci right 2.219360e-02	k: 403	n:20000
Cons ci ratio: 1.493527e-02	ci left: 7.691480e-01	ci right 7.807720e-01	k: 15500	n:20000
KS ci ratio: 3.710268e-01	ci left: 4.522436e-03	ci right 6.625242e-03	k: 110	n:20000
DCHS2   20000 perm   12 sec   (1718 perm/sec)   p_kst 5.500000e-03   p_cons 7.750000e-01   p_joint 2.015000e-02

Joint ci ratio: 1.881208e-01	ci left: 1.292349e-02	ci right 1.563844e-02	k: 427	n:30000
Cons ci ratio: 1.219225e-02	ci left: 7.702987e-01	ci right 7.797813e-01	k: 23252	n:30000
KS ci ratio: 3.110310e-01	ci left: 4.448416e-03	ci right 6.116268e-03	k: 157	n:30000
DCHS2   30000 perm   16 sec   (1875 perm/sec)   p_kst 5.233333e-03   p_cons 7.750667e-01   p_joint 1.423333e-02

Joint ci ratio: 1.083685e-01	ci left: 2.995595e-02	ci right 3.341248e-02	k: 1266	n:40000
Cons ci ratio: 1.059260e-02	ci left: 7.698187e-01	ci right 7.780415e-01	k: 30958	n:40000
KS ci ratio: 2.588642e-01	ci left: 4.962423e-03	ci right 6.460707e-03	k: 227	n:40000
DCHS2   40000 perm   21 sec   (1942 perm/sec)   p_kst 5.675000e-03   p_cons 7.739500e-01   p_joint 3.165000e-02

Joint ci ratio: 1.210570e-01	ci left: 1.929524e-02	ci right 2.180086e-02	k: 1026	n:50000
Cons ci ratio: 9.437749e-03	ci left: 7.716156e-01	ci right 7.789524e-01	k: 38765	n:50000
KS ci ratio: 2.424728e-01	ci left: 4.569652e-03	ci right 5.848830e-03	k: 259	n:50000
DCHS2   50000 perm   25 sec   (1984 perm/sec)   p_kst 5.180000e-03   p_cons 7.753000e-01   p_joint 2.052000e-02

Joint ci ratio: 1.130359e-01	ci left: 1.853818e-02	ci right 2.077529e-02	k: 1178	n:60000
Cons ci ratio: 8.596898e-03	ci left: 7.726926e-01	ci right 7.793807e-01	k: 46563	n:60000
KS ci ratio: 2.209910e-01	ci left: 4.640211e-03	ci right 5.808434e-03	k: 312	n:60000
DCHS2   60000 perm   30 sec   (2022 perm/sec)   p_kst 5.200000e-03   p_cons 7.760500e-01   p_joint 1.963333e-02

Joint ci ratio: 1.094343e-01	ci left: 1.701408e-02	ci right 1.899759e-02	k: 1259	n:70000
Cons ci ratio: 7.937097e-03	ci left: 7.739121e-01	ci right 7.800935e-01	k: 54391	n:70000
KS ci ratio: 1.954378e-01	ci left: 5.155734e-03	ci right 6.285831e-03	k: 399	n:70000
DCHS2   70000 perm   34 sec   (2037 perm/sec)   p_kst 5.700000e-03   p_cons 7.770143e-01   p_joint 1.798571e-02

Joint ci ratio: 1.068765e-01	ci left: 1.565292e-02	ci right 1.743239e-02	k: 1322	n:80000
Cons ci ratio: 7.423440e-03	ci left: 7.741620e-01	ci right 7.799428e-01	k: 62165	n:80000
KS ci ratio: 1.818464e-01	ci left: 5.249728e-03	ci right 6.311595e-03	k: 461	n:80000
DCHS2   80000 perm   39 sec   (2033 perm/sec)   p_kst 5.762500e-03   p_cons 7.770625e-01   p_joint 1.652500e-02

Joint ci ratio: 1.058851e-01	ci left: 1.420516e-02	ci right 1.580410e-02	k: 1349	n:90000
Cons ci ratio: 6.994537e-03	ci left: 7.745450e-01	ci right 7.799927e-01	k: 69955	n:90000
KS ci ratio: 1.714051e-01	ci left: 5.282405e-03	ci right 6.283187e-03	k: 519	n:90000
DCHS2   90000 perm   44 sec   (2039 perm/sec)   p_kst 5.766667e-03   p_cons 7.772778e-01   p_joint 1.498889e-02

Joint ci ratio: 1.053739e-01	ci left: 1.293023e-02	ci right 1.437819e-02	k: 1364	n:100000
Cons ci ratio: 6.537927e-03	ci left: 7.797993e-01	ci right 7.849243e-01	k: 78237	n:100000
KS ci ratio: 1.606326e-01	ci left: 5.444310e-03	ci right 6.404688e-03	k: 591	n:100000
DCHS2   100000 perm   49 sec   (2041 perm/sec)   p_kst 5.910000e-03   p_cons 7.823700e-01   p_joint 1.364000e-02

Joint ci ratio: 9.691609e-02	ci left: 1.394382e-02	ci right 1.537284e-02	k: 1611	n:110000
Cons ci ratio: 6.244267e-03	ci left: 7.793381e-01	ci right 7.842288e-01	k: 85997	n:110000
KS ci ratio: 1.534182e-01	ci left: 5.447200e-03	ci right 6.360964e-03	k: 648	n:110000
DCHS2   110000 perm   54 sec   (2043 perm/sec)   p_kst 5.890909e-03   p_cons 7.817909e-01   p_joint 1.464545e-02

Joint ci ratio: 8.991560e-02	ci left: 1.489012e-02	ci right 1.630010e-02	k: 1870	n:120000
Cons ci ratio: 5.967172e-03	ci left: 7.800879e-01	ci right 7.847651e-01	k: 93892	n:120000
KS ci ratio: 1.470959e-01	ci left: 5.450413e-03	ci right 6.323726e-03	k: 705	n:120000
DCHS2   120000 perm   59 sec   (2043 perm/sec)   p_kst 5.875000e-03   p_cons 7.824333e-01   p_joint 1.558333e-02

Joint ci ratio: 7.424646e-02	ci left: 2.021232e-02	ci right 2.177838e-02	k: 2728	n:130000
Cons ci ratio: 5.732209e-03	ci left: 7.802318e-01	ci right 7.847248e-01	k: 101723	n:130000
KS ci ratio: 1.404809e-01	ci left: 5.535433e-03	ci right 6.379141e-03	k: 773	n:130000
DCHS2   130000 perm   64 sec   (2035 perm/sec)   p_kst 5.946154e-03   p_cons 7.824846e-01   p_joint 2.098462e-02

Joint ci ratio: 7.352402e-02	ci left: 1.916782e-02	ci right 2.063788e-02	k: 2785	n:140000
Cons ci ratio: 5.529123e-03	ci left: 7.799783e-01	ci right 7.843100e-01	k: 109501	n:140000
KS ci ratio: 1.359908e-01	ci left: 5.498621e-03	ci right 6.307763e-03	k: 825	n:140000
DCHS2   140000 perm   69 sec   (2021 perm/sec)   p_kst 5.892857e-03   p_cons 7.821500e-01   p_joint 1.989286e-02

Joint ci ratio: 7.713408e-02	ci left: 1.627334e-02	ci right 1.758543e-02	k: 2538	n:150000
Cons ci ratio: 5.515879e-03	ci left: 7.688784e-01	ci right 7.731378e-01	k: 115652	n:150000
KS ci ratio: 1.317545e-01	ci left: 5.479987e-03	ci right 6.259299e-03	k: 879	n:150000
DCHS2   150000 perm   75 sec   (2011 perm/sec)   p_kst 5.860000e-03   p_cons 7.710133e-01   p_joint 1.692000e-02

Joint ci ratio: 7.571898e-02	ci left: 1.585079e-02	ci right 1.710432e-02	k: 2635	n:160000
Cons ci ratio: 5.349908e-03	ci left: 7.683375e-01	ci right 7.724652e-01	k: 123265	n:160000
KS ci ratio: 1.273436e-01	ci left: 5.512437e-03	ci right 6.268136e-03	k: 941	n:160000
DCHS2   160000 perm   80 sec   (2001 perm/sec)   p_kst 5.881250e-03   p_cons 7.704062e-01   p_joint 1.646875e-02

Joint ci ratio: 7.271924e-02	ci left: 1.619437e-02	ci right 1.742219e-02	k: 2856	n:170000
Cons ci ratio: 5.188193e-03	ci left: 7.685348e-01	ci right 7.725383e-01	k: 130992	n:170000
KS ci ratio: 1.229788e-01	ci left: 5.575665e-03	ci right 6.311925e-03	k: 1009	n:170000
DCHS2   170000 perm   86 sec   (1987 perm/sec)   p_kst 5.935294e-03   p_cons 7.705412e-01   p_joint 1.680000e-02

Joint ci ratio: 7.018887e-02	ci left: 1.643512e-02	ci right 1.763607e-02	k: 3065	n:180000
Cons ci ratio: 5.046565e-03	ci left: 7.682716e-01	ci right 7.721641e-01	k: 138640	n:180000
KS ci ratio: 1.265109e-01	ci left: 4.969785e-03	ci right 5.646298e-03	k: 954	n:180000
DCHS2   180000 perm   91 sec   (1980 perm/sec)   p_kst 5.300000e-03   p_cons 7.702222e-01   p_joint 1.702778e-02

Joint ci ratio: 6.944225e-02	ci left: 1.592161e-02	ci right 1.707216e-02	k: 3133	n:190000
Cons ci ratio: 4.912858e-03	ci left: 7.682593e-01	ci right 7.720482e-01	k: 146330	n:190000
KS ci ratio: 1.235102e-01	ci left: 4.947846e-03	ci right 5.604229e-03	k: 1001	n:190000
DCHS2   190000 perm   96 sec   (1973 perm/sec)   p_kst 5.268421e-03   p_cons 7.701579e-01   p_joint 1.648947e-02

Joint ci ratio: 6.641534e-02	ci left: 1.655108e-02	ci right 1.769298e-02	k: 3423	n:200000
Cons ci ratio: 4.788704e-03	ci left: 7.682896e-01	ci right 7.719825e-01	k: 154028	n:200000
KS ci ratio: 1.199116e-01	ci left: 4.996176e-03	ci right 5.638290e-03	k: 1062	n:200000
DCHS2   200000 perm   102 sec   (1961 perm/sec)   p_kst 5.310000e-03   p_cons 7.701400e-01   p_joint 1.711500e-02

Joint ci ratio: 6.454312e-02	ci left: 1.670445e-02	ci right 1.782322e-02	k: 3624	n:210000
Cons ci ratio: 4.676716e-03	ci left: 7.680746e-01	ci right 7.716798e-01	k: 161675	n:210000
KS ci ratio: 1.168718e-01	ci left: 5.017036e-03	ci right 5.644356e-03	k: 1118	n:210000
DCHS2   210000 perm   108 sec   (1953 perm/sec)   p_kst 5.323810e-03   p_cons 7.698810e-01   p_joint 1.725714e-02

Joint ci ratio: 6.240701e-02	ci left: 1.706806e-02	ci right 1.817198e-02	k: 3875	n:220000
Cons ci ratio: 4.568886e-03	ci left: 7.681400e-01	ci right 7.716620e-01	k: 169379	n:220000
KS ci ratio: 1.138574e-01	ci left: 5.053852e-03	ci right 5.668382e-03	k: 1178	n:220000
DCHS2   220000 perm   113 sec   (1943 perm/sec)   p_kst 5.354545e-03   p_cons 7.699045e-01   p_joint 1.761364e-02

Joint ci ratio: 6.153319e-02	ci left: 1.680531e-02	ci right 1.787647e-02	k: 3987	n:230000
Cons ci ratio: 4.468132e-03	ci left: 7.682048e-01	ci right 7.716492e-01	k: 177084	n:230000
KS ci ratio: 1.111551e-01	ci left: 5.079201e-03	ci right 5.681194e-03	k: 1236	n:230000
DCHS2   230000 perm   119 sec   (1930 perm/sec)   p_kst 5.373913e-03   p_cons 7.699304e-01   p_joint 1.733478e-02

Joint ci ratio: 5.698846e-02	ci left: 1.878207e-02	ci right 1.988791e-02	k: 4639	n:240000
Cons ci ratio: 4.375358e-03	ci left: 7.681356e-01	ci right 7.715079e-01	k: 184758	n:240000
KS ci ratio: 1.084681e-01	ci left: 5.118811e-03	ci right 5.709896e-03	k: 1298	n:240000
DCHS2   240000 perm   125 sec   (1918 perm/sec)   p_kst 5.408333e-03   p_cons 7.698250e-01   p_joint 1.932917e-02

Joint ci ratio: 5.685506e-02	ci left: 1.812919e-02	ci right 1.919401e-02	k: 4664	n:250000
Cons ci ratio: 4.287405e-03	ci left: 7.681327e-01	ci right 7.714370e-01	k: 192447	n:250000
KS ci ratio: 1.063606e-01	ci left: 5.116470e-03	ci right 5.695087e-03	k: 1350	n:250000
DCHS2   250000 perm   131 sec   (1902 perm/sec)   p_kst 5.400000e-03   p_cons 7.697880e-01   p_joint 1.865600e-02

Joint ci ratio: 5.639158e-02	ci left: 1.773136e-02	ci right 1.876404e-02	k: 4743	n:260000
Cons ci ratio: 4.205099e-03	ci left: 7.680844e-01	ci right 7.713249e-01	k: 200124	n:260000
KS ci ratio: 1.039255e-01	ci left: 5.159370e-03	ci right 5.728663e-03	k: 1414	n:260000
DCHS2   260000 perm   138 sec   (1887 perm/sec)   p_kst 5.438462e-03   p_cons 7.697077e-01   p_joint 1.824231e-02

Joint ci ratio: 5.577998e-02	ci left: 1.746166e-02	ci right 1.846725e-02	k: 4849	n:270000
Cons ci ratio: 4.128004e-03	ci left: 7.679847e-01	ci right 7.711651e-01	k: 207786	n:270000
KS ci ratio: 1.022428e-01	ci left: 5.137865e-03	ci right 5.695055e-03	k: 1461	n:270000
DCHS2   270000 perm   144 sec   (1876 perm/sec)   p_kst 5.411111e-03   p_cons 7.695778e-01   p_joint 1.795926e-02

Joint ci ratio: 5.411910e-02	ci left: 1.789484e-02	ci right 1.889373e-02	k: 5149	n:280000
Cons ci ratio: 4.055733e-03	ci left: 7.678281e-01	ci right 7.709520e-01	k: 215430	n:280000
KS ci ratio: 1.002062e-01	ci left: 5.163234e-03	ci right 5.711365e-03	k: 1521	n:280000
DCHS2   280000 perm   150 sec   (1866 perm/sec)   p_kst 5.432143e-03   p_cons 7.693929e-01   p_joint 1.838929e-02

Joint ci ratio: 5.469058e-02	ci left: 1.693061e-02	ci right 1.788597e-02	k: 5047	n:290000
Cons ci ratio: 3.987746e-03	ci left: 7.676275e-01	ci right 7.706981e-01	k: 223058	n:290000
KS ci ratio: 9.863197e-02	ci left: 5.149954e-03	ci right 5.687589e-03	k: 1570	n:290000
DCHS2   290000 perm   157 sec   (1852 perm/sec)   p_kst 5.413793e-03   p_cons 7.691655e-01   p_joint 1.740345e-02

Outputting figure to mutsig2_images.part000000000047/DCHS2.39_11085_290000_0.0054138_0.76917_0.017403.png
                gene_name: DCHS2
               theta_stop: 0.099 
                    nperm: 290000 
                     p_ks: 0.0054 
        ci_ks_bounds_left: 0.0051 
       ci_ks_bounds_right: 0.0057 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.018 

Current progress: 2 percent done.
DAPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.619358e-02	ci left: 6.821411e-01	ci right 7.003474e-01	k: 6913	n:10000
Cons ci ratio: 6.205820e-02	ci left: 2.762651e-01	ci right 2.940602e-01	k: 2851	n:10000
KS ci ratio: 9.028594e-03	ci left: 9.452335e-01	ci right 9.539023e-01	k: 9497	n:10000
DAPK1   10000 perm   3 sec   (3925 perm/sec)   p_kst 9.497000e-01   p_cons 2.851000e-01   p_joint 6.913000e-01

Outputting figure to mutsig2_images.part000000000047/DAPK1.17_4393_10000_0.9497_0.2851_0.6913.png
                gene_name: DAPK1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 4 percent done.
DCC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.694391e-01	ci left: 4.648153e-02	ci right 5.518251e-02	k: 507	n:10000
Cons ci ratio: 4.349652e-02	ci left: 4.383194e-01	ci right 4.579108e-01	k: 4481	n:10000
KS ci ratio: 2.824171e-01	ci left: 1.622887e-02	ci right 2.165650e-02	k: 188	n:10000
DCC   10000 perm   2 sec   (4068 perm/sec)   p_kst 1.880000e-02   p_cons 4.481000e-01   p_joint 5.070000e-02

Joint ci ratio: 1.378673e-01	ci left: 3.616580e-02	ci right 4.156932e-02	k: 776	n:20000
Cons ci ratio: 3.092776e-02	ci left: 4.384953e-01	ci right 4.523206e-01	k: 8908	n:20000
KS ci ratio: 1.978447e-01	ci left: 1.734330e-02	ci right 2.119826e-02	k: 384	n:20000
DCC   20000 perm   5 sec   (3773 perm/sec)   p_kst 1.920000e-02   p_cons 4.454000e-01   p_joint 3.880000e-02

Joint ci ratio: 1.073782e-01	ci left: 4.024502e-02	ci right 4.484410e-02	k: 1275	n:30000
Cons ci ratio: 2.517322e-02	ci left: 4.413294e-01	ci right 4.526143e-01	k: 13409	n:30000
KS ci ratio: 1.639452e-01	ci left: 1.716520e-02	ci right 2.026233e-02	k: 560	n:30000
DCC   30000 perm   8 sec   (3657 perm/sec)   p_kst 1.866667e-02   p_cons 4.469667e-01   p_joint 4.250000e-02

Joint ci ratio: 8.714396e-02	ci left: 4.604791e-02	ci right 5.026800e-02	k: 1925	n:40000
Cons ci ratio: 2.173017e-02	ci left: 4.436925e-01	ci right 4.534650e-01	k: 17943	n:40000
KS ci ratio: 1.414044e-01	ci left: 1.751566e-02	ci right 2.020484e-02	k: 753	n:40000
DCC   40000 perm   11 sec   (3541 perm/sec)   p_kst 1.882500e-02   p_cons 4.485750e-01   p_joint 4.812500e-02

Joint ci ratio: 8.941029e-02	ci left: 3.536239e-02	ci right 3.869164e-02	k: 1850	n:50000
Cons ci ratio: 1.943446e-02	ci left: 4.442537e-01	ci right 4.529923e-01	k: 22431	n:50000
KS ci ratio: 1.269230e-01	ci left: 1.753064e-02	ci right 1.992570e-02	k: 935	n:50000
DCC   50000 perm   15 sec   (3426 perm/sec)   p_kst 1.870000e-02   p_cons 4.486200e-01   p_joint 3.700000e-02

Joint ci ratio: 8.482903e-02	ci left: 3.290694e-02	ci right 3.583833e-02	k: 2061	n:60000
Cons ci ratio: 1.773599e-02	ci left: 4.447812e-01	ci right 4.527571e-01	k: 26926	n:60000
KS ci ratio: 1.162448e-01	ci left: 1.751774e-02	ci right 1.969584e-02	k: 1115	n:60000
DCC   60000 perm   18 sec   (3347 perm/sec)   p_kst 1.858333e-02   p_cons 4.487667e-01   p_joint 3.435000e-02

Joint ci ratio: 7.842966e-02	ci left: 3.310410e-02	ci right 3.582039e-02	k: 2411	n:70000
Cons ci ratio: 1.709338e-02	ci left: 4.253151e-01	ci right 4.326622e-01	k: 30029	n:70000
KS ci ratio: 1.070370e-01	ci left: 1.779279e-02	ci right 1.981880e-02	k: 1315	n:70000
DCC   70000 perm   21 sec   (3312 perm/sec)   p_kst 1.878571e-02   p_cons 4.289857e-01   p_joint 3.444286e-02

Joint ci ratio: 7.611822e-02	ci left: 3.086477e-02	ci right 3.331932e-02	k: 2566	n:80000
Cons ci ratio: 1.596901e-02	ci left: 4.261786e-01	ci right 4.330515e-01	k: 34369	n:80000
KS ci ratio: 1.007402e-01	ci left: 1.763844e-02	ci right 1.952171e-02	k: 1485	n:80000
DCC   80000 perm   25 sec   (3255 perm/sec)   p_kst 1.856250e-02   p_cons 4.296125e-01   p_joint 3.207500e-02

Joint ci ratio: 6.713392e-02	ci left: 3.527329e-02	ci right 3.773448e-02	k: 3284	n:90000
Cons ci ratio: 1.509649e-02	ci left: 4.250529e-01	ci right 4.315295e-01	k: 38546	n:90000
KS ci ratio: 9.500051e-02	ci left: 1.768389e-02	ci right 1.945844e-02	k: 1670	n:90000
DCC   90000 perm   28 sec   (3190 perm/sec)   p_kst 1.855556e-02   p_cons 4.282889e-01   p_joint 3.648889e-02

Outputting figure to mutsig2_images.part000000000047/DCC.16_4460_90000_0.018556_0.42829_0.036489.png
                gene_name: DCC
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 5 percent done.
DACH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.408155e-02	ci left: 4.317357e-01	ci right 4.512984e-01	k: 4415	n:10000
Cons ci ratio: 3.301959e-02	ci left: 5.751689e-01	ci right 5.945816e-01	k: 5849	n:10000
KS ci ratio: 5.616004e-02	ci left: 3.183032e-01	ci right 3.367974e-01	k: 3275	n:10000
DACH2   10000 perm   2 sec   (5282 perm/sec)   p_kst 3.275000e-01   p_cons 5.849000e-01   p_joint 4.415000e-01

Outputting figure to mutsig2_images.part000000000047/DACH2.13_1857_10000_0.3275_0.5849_0.4415.png
                gene_name: DACH2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 7 percent done.
DCHS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.972311e-02	ci left: 7.899946e-01	ci right 8.058315e-01	k: 7980	n:10000
Cons ci ratio: 3.516762e-02	ci left: 5.441930e-01	ci right 5.637756e-01	k: 5540	n:10000
KS ci ratio: 2.840946e-02	ci left: 6.461925e-01	ci right 6.649168e-01	k: 6556	n:10000
DCHS1   10000 perm   3 sec   (3251 perm/sec)   p_kst 6.556000e-01   p_cons 5.540000e-01   p_joint 7.980000e-01

Outputting figure to mutsig2_images.part000000000047/DCHS1.13_9977_10000_0.6556_0.554_0.798.png
                gene_name: DCHS1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 9 percent done.
DCLK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.366395e-02	ci left: 7.241112e-01	ci right 7.415529e-01	k: 7329	n:10000
Cons ci ratio: 4.956580e-02	ci left: 3.751490e-01	ci right 3.943182e-01	k: 3847	n:10000
KS ci ratio: 1.823030e-02	ci left: 8.145627e-01	ci right 8.296492e-01	k: 8222	n:10000
DCLK1   10000 perm   2 sec   (5194 perm/sec)   p_kst 8.222000e-01   p_cons 3.847000e-01   p_joint 7.329000e-01

Outputting figure to mutsig2_images.part000000000047/DCLK1.13_2258_10000_0.8222_0.3847_0.7329.png
                gene_name: DCLK1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 11 percent done.
DCAF4L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.312521e-02	ci left: 2.694328e-01	ci right 2.870966e-01	k: 2782	n:10000
Cons ci ratio: 5.071561e-02	ci left: 3.644048e-01	ci right 3.834687e-01	k: 3739	n:10000
KS ci ratio: 8.143879e-02	ci left: 1.803839e-01	ci right 1.957983e-01	k: 1880	n:10000
DCAF4L2   10000 perm   2 sec   (4936 perm/sec)   p_kst 1.880000e-01   p_cons 3.739000e-01   p_joint 2.782000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF4L2.12_1192_10000_0.188_0.3739_0.2782.png
                gene_name: DCAF4L2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 12 percent done.
DBC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.094610e-02	ci left: 7.696229e-01	ci right 7.860149e-01	k: 7779	n:10000
Cons ci ratio: 3.219686e-02	ci left: 5.874096e-01	ci right 6.067338e-01	k: 5971	n:10000
KS ci ratio: 2.765834e-02	ci left: 6.582693e-01	ci right 6.768330e-01	k: 6676	n:10000
DBC1   10000 perm   2 sec   (4782 perm/sec)   p_kst 6.676000e-01   p_cons 5.971000e-01   p_joint 7.779000e-01

Outputting figure to mutsig2_images.part000000000047/DBC1.10_2314_10000_0.6676_0.5971_0.7779.png
                gene_name: DBC1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 14 percent done.
DAAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.001686e-01	ci left: 1.261085e-01	ci right 1.395062e-01	k: 1327	n:10000
Cons ci ratio: 1.239222e-02	ci left: 9.033987e-01	ci right 9.147617e-01	k: 9092	n:10000
KS ci ratio: 1.631092e-01	ci left: 5.013112e-02	ci right 5.913054e-02	k: 545	n:10000
DAAM2   10000 perm   2 sec   (4870 perm/sec)   p_kst 5.450000e-02   p_cons 9.092000e-01   p_joint 1.327000e-01

Joint ci ratio: 7.089269e-02	ci left: 1.278792e-01	ci right 1.373279e-01	k: 2651	n:20000
Cons ci ratio: 8.263972e-03	ci left: 9.145199e-01	ci right 9.221580e-01	k: 18368	n:20000
KS ci ratio: 1.160139e-01	ci left: 5.085900e-02	ci right 5.717145e-02	k: 1079	n:20000
DAAM2   20000 perm   5 sec   (4275 perm/sec)   p_kst 5.395000e-02   p_cons 9.184000e-01   p_joint 1.325500e-01

Joint ci ratio: 5.966933e-02	ci left: 1.220013e-01	ci right 1.295380e-01	k: 3772	n:30000
Cons ci ratio: 6.864854e-03	ci left: 9.125667e-01	ci right 9.188858e-01	k: 27473	n:30000
KS ci ratio: 9.528656e-02	ci left: 5.084996e-02	ci right 5.597030e-02	k: 1601	n:30000
DAAM2   30000 perm   7 sec   (4082 perm/sec)   p_kst 5.336667e-02   p_cons 9.157667e-01   p_joint 1.257333e-01

Outputting figure to mutsig2_images.part000000000047/DAAM2.9_3300_30000_0.053367_0.91577_0.12573.png
                gene_name: DAAM2
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 16 percent done.
DAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.292136e-02	ci left: 7.365388e-01	ci right 7.537181e-01	k: 7452	n:10000
Cons ci ratio: 4.554104e-02	ci left: 4.157825e-01	ci right 4.352610e-01	k: 4255	n:10000
KS ci ratio: 6.352252e-03	ci left: 9.712187e-01	ci right 9.775008e-01	k: 9745	n:10000
DAB1   10000 perm   2 sec   (5299 perm/sec)   p_kst 9.745000e-01   p_cons 4.255000e-01   p_joint 7.452000e-01

Outputting figure to mutsig2_images.part000000000047/DAB1.7_1720_10000_0.9745_0.4255_0.7452.png
                gene_name: DAB1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 18 percent done.
DCAF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.442515e-02	ci left: 1.400152e-01	ci right 1.539911e-01	k: 1469	n:10000
Cons ci ratio: 3.026288e-01	ci left: 1.400230e-02	ci right 1.908497e-02	k: 164	n:10000
KS ci ratio: 2.316274e-02	ci left: 7.324964e-01	ci right 7.497629e-01	k: 7412	n:10000
DCAF6   10000 perm   2 sec   (4669 perm/sec)   p_kst 7.412000e-01   p_cons 1.640000e-02   p_joint 1.469000e-01

Joint ci ratio: 7.763852e-02	ci left: 1.086438e-01	ci right 1.174690e-01	k: 2260	n:20000
Cons ci ratio: 2.227351e-01	ci left: 1.355014e-02	ci right 1.699289e-02	k: 304	n:20000
KS ci ratio: 1.621868e-02	ci left: 7.388487e-01	ci right 7.509801e-01	k: 14899	n:20000
DCAF6   20000 perm   5 sec   (4343 perm/sec)   p_kst 7.449500e-01   p_cons 1.520000e-02   p_joint 1.130000e-01

Joint ci ratio: 6.960991e-02	ci left: 9.226246e-02	ci right 9.894943e-02	k: 2867	n:30000
Cons ci ratio: 1.819649e-01	ci left: 1.384596e-02	ci right 1.664906e-02	k: 456	n:30000
KS ci ratio: 1.324661e-02	ci left: 7.398599e-01	ci right 7.497593e-01	k: 22345	n:30000
DCAF6   30000 perm   7 sec   (4203 perm/sec)   p_kst 7.448333e-01   p_cons 1.520000e-02   p_joint 9.556667e-02

Joint ci ratio: 6.310669e-02	ci left: 8.519195e-02	ci right 9.076803e-02	k: 3518	n:40000
Cons ci ratio: 1.427612e-01	ci left: 1.717789e-02	ci right 1.984267e-02	k: 739	n:40000
KS ci ratio: 1.147368e-02	ci left: 7.404722e-01	ci right 7.490422e-01	k: 29791	n:40000
DCAF6   40000 perm   10 sec   (3983 perm/sec)   p_kst 7.447750e-01   p_cons 1.847500e-02   p_joint 8.795000e-02

Joint ci ratio: 5.450816e-02	ci left: 9.117911e-02	ci right 9.630817e-02	k: 4686	n:50000
Cons ci ratio: 1.278307e-01	ci left: 1.727878e-02	ci right 1.965759e-02	k: 922	n:50000
KS ci ratio: 1.025469e-02	ci left: 7.412157e-01	ci right 7.488758e-01	k: 37253	n:50000
DCAF6   50000 perm   13 sec   (3889 perm/sec)   p_kst 7.450600e-01   p_cons 1.844000e-02   p_joint 9.372000e-02

Joint ci ratio: 5.409825e-02	ci left: 7.828567e-02	ci right 8.265501e-02	k: 4827	n:60000
Cons ci ratio: 1.166180e-01	ci left: 1.740441e-02	ci right 1.957585e-02	k: 1108	n:60000
KS ci ratio: 9.344626e-03	ci left: 7.422289e-01	ci right 7.492140e-01	k: 44744	n:60000
DCAF6   60000 perm   16 sec   (3806 perm/sec)   p_kst 7.457333e-01   p_cons 1.846667e-02   p_joint 8.045000e-02

Joint ci ratio: 4.868717e-02	ci left: 8.268985e-02	ci right 8.683036e-02	k: 5932	n:70000
Cons ci ratio: 1.078331e-01	ci left: 1.752853e-02	ci right 1.954023e-02	k: 1296	n:70000
KS ci ratio: 8.653510e-03	ci left: 7.423994e-01	ci right 7.488659e-01	k: 52195	n:70000
DCAF6   70000 perm   19 sec   (3712 perm/sec)   p_kst 7.456429e-01   p_cons 1.851429e-02   p_joint 8.474286e-02

Joint ci ratio: 4.279790e-02	ci left: 9.287758e-02	ci right 9.695185e-02	k: 7592	n:80000
Cons ci ratio: 1.009828e-01	ci left: 1.755310e-02	ci right 1.943205e-02	k: 1478	n:80000
KS ci ratio: 8.085399e-03	ci left: 7.430438e-01	ci right 7.490884e-01	k: 59686	n:80000
DCAF6   80000 perm   22 sec   (3633 perm/sec)   p_kst 7.460750e-01   p_cons 1.847500e-02   p_joint 9.490000e-02

Joint ci ratio: 4.059787e-02	ci left: 9.195784e-02	ci right 9.577949e-02	k: 8447	n:90000
Cons ci ratio: 9.491373e-02	ci left: 1.771645e-02	ci right 1.949255e-02	k: 1673	n:90000
KS ci ratio: 7.631205e-03	ci left: 7.428081e-01	ci right 7.485094e-01	k: 67110	n:90000
DCAF6   90000 perm   26 sec   (3469 perm/sec)   p_kst 7.456667e-01   p_cons 1.858889e-02   p_joint 9.385556e-02

Outputting figure to mutsig2_images.part000000000047/DCAF6.7_2723_90000_0.74567_0.018589_0.093856.png
                gene_name: DCAF6
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.096 

Current progress: 19 percent done.
DCLK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.617518e-02	ci left: 6.824434e-01	ci right 7.006449e-01	k: 6916	n:10000
Cons ci ratio: 3.581263e-02	ci left: 5.351780e-01	ci right 5.547957e-01	k: 5450	n:10000
KS ci ratio: 2.329554e-02	ci left: 7.302734e-01	ci right 7.475872e-01	k: 7390	n:10000
DCLK2   10000 perm   2 sec   (4899 perm/sec)   p_kst 7.390000e-01   p_cons 5.450000e-01   p_joint 6.916000e-01

Outputting figure to mutsig2_images.part000000000047/DCLK2.7_2365_10000_0.739_0.545_0.6916.png
                gene_name: DCLK2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 21 percent done.
DAB2IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.162196e-02	ci left: 2.221762e-01	ci right 2.387810e-01	k: 2304	n:10000
Cons ci ratio: 1.156144e-01	ci left: 9.710875e-02	ci right 1.091236e-01	k: 1030	n:10000
KS ci ratio: 4.531823e-02	ci left: 4.181748e-01	ci right 4.376672e-01	k: 4279	n:10000
DAB2IP   10000 perm   2 sec   (5096 perm/sec)   p_kst 4.279000e-01   p_cons 1.030000e-01   p_joint 2.304000e-01

Joint ci ratio: 4.301041e-02	ci left: 2.870951e-01	ci right 2.997650e-01	k: 5868	n:20000
Cons ci ratio: 8.140165e-02	ci left: 9.965488e-02	ci right 1.081607e-01	k: 2077	n:20000
KS ci ratio: 3.243689e-02	ci left: 4.151421e-01	ci right 4.288806e-01	k: 8440	n:20000
DAB2IP   20000 perm   4 sec   (4567 perm/sec)   p_kst 4.220000e-01   p_cons 1.038500e-01   p_joint 2.934000e-01

Outputting figure to mutsig2_images.part000000000047/DAB2IP.6_3564_20000_0.422_0.10385_0.2934.png
                gene_name: DAB2IP
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 23 percent done.
DACT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
Cons ci ratio: 1.585526e-01	ci left: 5.301669e-02	ci right 6.224312e-02	k: 575	n:10000
KS ci ratio: 9.747717e-02	ci left: 1.323733e-01	ci right 1.460376e-01	k: 1391	n:10000
DACT1   10000 perm   2 sec   (4582 perm/sec)   p_kst 1.391000e-01   p_cons 5.750000e-02   p_joint 4.450000e-02

Joint ci ratio: 1.222419e-01	ci left: 4.590339e-02	ci right 5.192862e-02	k: 977	n:20000
Cons ci ratio: 1.168744e-01	ci left: 5.012972e-02	ci right 5.640096e-02	k: 1064	n:20000
KS ci ratio: 6.914447e-02	ci left: 1.336420e-01	ci right 1.432634e-01	k: 2768	n:20000
DACT1   20000 perm   5 sec   (4092 perm/sec)   p_kst 1.384000e-01   p_cons 5.320000e-02   p_joint 4.885000e-02

Joint ci ratio: 8.800357e-02	ci left: 5.929696e-02	ci right 6.478823e-02	k: 1860	n:30000
Cons ci ratio: 9.438741e-02	ci left: 5.179491e-02	ci right 5.695849e-02	k: 1630	n:30000
KS ci ratio: 5.656328e-02	ci left: 1.340827e-01	ci right 1.419208e-01	k: 4139	n:30000
DACT1   30000 perm   7 sec   (4056 perm/sec)   p_kst 1.379667e-01   p_cons 5.433333e-02   p_joint 6.200000e-02

Outputting figure to mutsig2_images.part000000000047/DACT1.6_2527_30000_0.13797_0.054333_0.062.png
                gene_name: DACT1
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.065 

Current progress: 25 percent done.
DAO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.578324e-02	ci left: 6.888946e-01	ci right 7.069900e-01	k: 6980	n:10000
Cons ci ratio: 8.343912e-02	ci left: 1.732025e-01	ci right 1.883840e-01	k: 1807	n:10000
KS ci ratio: 1.362230e-02	ci left: 8.860594e-01	ci right 8.983110e-01	k: 8923	n:10000
DAO   10000 perm   2 sec   (4933 perm/sec)   p_kst 8.923000e-01   p_cons 1.807000e-01   p_joint 6.980000e-01

Outputting figure to mutsig2_images.part000000000047/DAO.6_1084_10000_0.8923_0.1807_0.698.png
                gene_name: DAO
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 26 percent done.
DCAF13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.943212e-02	ci left: 2.332365e-01	ci right 2.501142e-01	k: 2416	n:10000
Cons ci ratio: 1.271427e-01	ci left: 8.125571e-02	ci right 9.238637e-02	k: 867	n:10000
KS ci ratio: 5.449446e-02	ci left: 3.316070e-01	ci right 3.502858e-01	k: 3409	n:10000
DCAF13   10000 perm   2 sec   (5249 perm/sec)   p_kst 3.409000e-01   p_cons 8.670000e-02   p_joint 2.416000e-01

Joint ci ratio: 5.847869e-02	ci left: 1.780579e-01	ci right 1.888343e-01	k: 3668	n:20000
Cons ci ratio: 8.870753e-02	ci left: 8.499069e-02	ci right 9.292928e-02	k: 1778	n:20000
KS ci ratio: 3.882668e-02	ci left: 3.309954e-01	ci right 3.441518e-01	k: 6751	n:20000
DCAF13   20000 perm   4 sec   (4632 perm/sec)   p_kst 3.375500e-01   p_cons 8.890000e-02   p_joint 1.834000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF13.6_1838_20000_0.33755_0.0889_0.1834.png
                gene_name: DCAF13
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 28 percent done.
DCDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.318984e-02	ci left: 5.726613e-01	ci right 5.920907e-01	k: 5824	n:10000
Cons ci ratio: 5.914541e-02	ci left: 2.960832e-01	ci right 3.142305e-01	k: 3051	n:10000
KS ci ratio: 2.446268e-02	ci left: 7.107838e-01	ci right 7.284881e-01	k: 7197	n:10000
DCDC2   10000 perm   2 sec   (5030 perm/sec)   p_kst 7.197000e-01   p_cons 3.051000e-01   p_joint 5.824000e-01

Outputting figure to mutsig2_images.part000000000047/DCDC2.6_1471_10000_0.7197_0.3051_0.5824.png
                gene_name: DCDC2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 30 percent done.
DAB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.427985e-02	ci left: 5.568193e-01	ci right 5.763419e-01	k: 5666	n:10000
Cons ci ratio: 6.068661e-02	ci left: 2.853789e-01	ci right 3.033411e-01	k: 2943	n:10000
KS ci ratio: 1.409225e-02	ci left: 8.791989e-01	ci right 8.917756e-01	k: 8856	n:10000
DAB2   10000 perm   2 sec   (5382 perm/sec)   p_kst 8.856000e-01   p_cons 2.943000e-01   p_joint 5.666000e-01

Outputting figure to mutsig2_images.part000000000047/DAB2.5_2365_10000_0.8856_0.2943_0.5666.png
                gene_name: DAB2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 32 percent done.
DAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.192992e-02	ci left: 5.914243e-01	ci right 6.107168e-01	k: 6011	n:10000
Cons ci ratio: 3.802803e-02	ci left: 5.052515e-01	ci right 5.249398e-01	k: 5151	n:10000
KS ci ratio: 5.172698e-02	ci left: 3.552563e-01	ci right 3.742225e-01	k: 3647	n:10000
DAG1   10000 perm   2 sec   (4982 perm/sec)   p_kst 3.647000e-01   p_cons 5.151000e-01   p_joint 6.011000e-01

Outputting figure to mutsig2_images.part000000000047/DAG1.5_2696_10000_0.3647_0.5151_0.6011.png
                gene_name: DAG1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 33 percent done.
DBF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.395411e-02	ci left: 7.192638e-01	ci right 7.368032e-01	k: 7281	n:10000
Cons ci ratio: 5.812920e-02	ci left: 3.034210e-01	ci right 3.216883e-01	k: 3125	n:10000
KS ci ratio: 4.528124e-02	ci left: 4.185735e-01	ci right 4.380683e-01	k: 4283	n:10000
DBF4   10000 perm   2 sec   (4945 perm/sec)   p_kst 4.283000e-01   p_cons 3.125000e-01   p_joint 7.281000e-01

Outputting figure to mutsig2_images.part000000000047/DBF4.5_2073_10000_0.4283_0.3125_0.7281.png
                gene_name: DBF4
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 35 percent done.
DBH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
Cons ci ratio: 1.277074e-01	ci left: 8.057611e-02	ci right 9.166638e-02	k: 860	n:10000
KS ci ratio: 5.003467e-01	ci left: 4.581663e-03	ci right 7.716529e-03	k: 60	n:10000
DBH   10000 perm   2 sec   (5304 perm/sec)   p_kst 6.000000e-03   p_cons 8.600000e-02   p_joint 9.400000e-03

Joint ci ratio: 3.628969e-01	ci left: 4.749480e-03	ci right 6.898025e-03	k: 115	n:20000
Cons ci ratio: 8.923154e-02	ci left: 8.405991e-02	ci right 9.196034e-02	k: 1759	n:20000
KS ci ratio: 3.413601e-01	ci left: 5.433506e-03	ci right 7.713515e-03	k: 130	n:20000
DBH   20000 perm   4 sec   (4593 perm/sec)   p_kst 6.500000e-03   p_cons 8.795000e-02   p_joint 5.750000e-03

Joint ci ratio: 2.074060e-01	ci left: 1.054560e-02	ci right 1.301697e-02	k: 352	n:30000
Cons ci ratio: 6.909169e-02	ci left: 9.354219e-02	ci right 1.002694e-01	k: 2906	n:30000
KS ci ratio: 2.755631e-01	ci left: 5.777180e-03	ci right 7.653601e-03	k: 200	n:30000
DBH   30000 perm   7 sec   (4479 perm/sec)   p_kst 6.666667e-03   p_cons 9.686667e-02   p_joint 1.173333e-02

Joint ci ratio: 1.610203e-01	ci left: 1.342339e-02	ci right 1.579784e-02	k: 583	n:40000
Cons ci ratio: 5.957192e-02	ci left: 9.475779e-02	ci right 1.006008e-01	k: 3906	n:40000
KS ci ratio: 2.192923e-01	ci left: 7.055794e-03	ci right 8.816768e-03	k: 316	n:40000
DBH   40000 perm   9 sec   (4385 perm/sec)   p_kst 7.900000e-03   p_cons 9.765000e-02   p_joint 1.457500e-02

Joint ci ratio: 1.585347e-01	ci left: 1.112165e-02	ci right 1.305562e-02	k: 603	n:50000
Cons ci ratio: 5.332370e-02	ci left: 9.493309e-02	ci right 1.001537e-01	k: 4876	n:50000
KS ci ratio: 1.939940e-01	ci left: 7.313959e-03	ci right 8.903947e-03	k: 404	n:50000
DBH   50000 perm   12 sec   (4238 perm/sec)   p_kst 8.080000e-03   p_cons 9.752000e-02   p_joint 1.206000e-02

Joint ci ratio: 1.582997e-01	ci left: 9.315360e-03	ci right 1.093255e-02	k: 606	n:60000
Cons ci ratio: 4.859679e-02	ci left: 9.545084e-02	ci right 1.002215e-01	k: 5869	n:60000
KS ci ratio: 1.776453e-01	ci left: 7.334596e-03	ci right 8.780263e-03	k: 482	n:60000
DBH   60000 perm   14 sec   (4183 perm/sec)   p_kst 8.033333e-03   p_cons 9.781667e-02   p_joint 1.010000e-02

Joint ci ratio: 1.600188e-01	ci left: 7.819502e-03	ci right 9.193135e-03	k: 594	n:70000
Cons ci ratio: 4.534258e-02	ci left: 9.427980e-02	ci right 9.866800e-02	k: 6752	n:70000
KS ci ratio: 1.623748e-01	ci left: 7.586368e-03	ci right 8.940583e-03	k: 577	n:70000
DBH   70000 perm   17 sec   (4127 perm/sec)   p_kst 8.242857e-03   p_cons 9.645714e-02   p_joint 8.485714e-03

Joint ci ratio: 1.565645e-01	ci left: 7.166003e-03	ci right 8.395097e-03	k: 621	n:80000
Cons ci ratio: 4.241326e-02	ci left: 9.442514e-02	ci right 9.852917e-02	k: 7717	n:80000
KS ci ratio: 1.516071e-01	ci left: 7.658889e-03	ci right 8.927158e-03	k: 662	n:80000
DBH   80000 perm   20 sec   (4067 perm/sec)   p_kst 8.275000e-03   p_cons 9.646250e-02   p_joint 7.762500e-03

Joint ci ratio: 1.253790e-01	ci left: 1.007037e-02	ci right 1.142811e-02	k: 966	n:90000
Cons ci ratio: 3.992341e-02	ci left: 9.482063e-02	ci right 9.869430e-02	k: 8707	n:90000
KS ci ratio: 1.422531e-01	ci left: 7.771196e-03	ci right 8.971926e-03	k: 752	n:90000
DBH   90000 perm   22 sec   (4015 perm/sec)   p_kst 8.355556e-03   p_cons 9.674444e-02   p_joint 1.073333e-02

Joint ci ratio: 1.191945e-01	ci left: 1.006184e-02	ci right 1.134678e-02	k: 1069	n:100000
Cons ci ratio: 3.808763e-02	ci left: 9.395284e-02	ci right 9.761065e-02	k: 9577	n:100000
KS ci ratio: 1.346829e-01	ci left: 7.833968e-03	ci right 8.974821e-03	k: 839	n:100000
DBH   100000 perm   25 sec   (3961 perm/sec)   p_kst 8.390000e-03   p_cons 9.577000e-02   p_joint 1.069000e-02

Joint ci ratio: 1.215094e-01	ci left: 8.802900e-03	ci right 9.950464e-03	k: 1030	n:110000
Cons ci ratio: 3.636441e-02	ci left: 9.380537e-02	ci right 9.728872e-02	k: 10509	n:110000
KS ci ratio: 1.305700e-01	ci left: 7.596350e-03	ci right 8.666191e-03	k: 893	n:110000
DBH   110000 perm   28 sec   (3910 perm/sec)   p_kst 8.118182e-03   p_cons 9.553636e-02   p_joint 9.363636e-03

Joint ci ratio: 9.434146e-02	ci left: 1.351376e-02	ci right 1.485987e-02	k: 1701	n:120000
Cons ci ratio: 3.476176e-02	ci left: 9.414866e-02	ci right 9.748757e-02	k: 11497	n:120000
KS ci ratio: 1.255492e-01	ci left: 7.552158e-03	ci right 8.571831e-03	k: 966	n:120000
DBH   120000 perm   31 sec   (3858 perm/sec)   p_kst 8.050000e-03   p_cons 9.580833e-02   p_joint 1.417500e-02

Joint ci ratio: 9.091167e-02	ci left: 1.345857e-02	ci right 1.474785e-02	k: 1832	n:130000
Cons ci ratio: 3.339976e-02	ci left: 9.420529e-02	ci right 9.741277e-02	k: 12454	n:130000
KS ci ratio: 1.195123e-01	ci left: 7.716924e-03	ci right 8.705202e-03	k: 1066	n:130000
DBH   130000 perm   34 sec   (3771 perm/sec)   p_kst 8.200000e-03   p_cons 9.580000e-02   p_joint 1.409231e-02

Joint ci ratio: 9.080764e-02	ci left: 1.253886e-02	ci right 1.373858e-02	k: 1838	n:140000
Cons ci ratio: 3.219687e-02	ci left: 9.419929e-02	ci right 9.728890e-02	k: 13403	n:140000
KS ci ratio: 1.150679e-01	ci left: 7.748121e-03	ci right 8.700987e-03	k: 1150	n:140000
DBH   140000 perm   38 sec   (3717 perm/sec)   p_kst 8.214286e-03   p_cons 9.573571e-02   p_joint 1.312857e-02

Joint ci ratio: 8.328645e-02	ci left: 1.394683e-02	ci right 1.516538e-02	k: 2182	n:150000
Cons ci ratio: 3.112722e-02	ci left: 9.412970e-02	ci right 9.711262e-02	k: 14342	n:150000
KS ci ratio: 1.108591e-01	ci left: 7.808164e-03	ci right 8.730995e-03	k: 1239	n:150000
DBH   150000 perm   41 sec   (3664 perm/sec)   p_kst 8.260000e-03   p_cons 9.561333e-02   p_joint 1.454667e-02

Joint ci ratio: 7.800704e-02	ci left: 1.493103e-02	ci right 1.614912e-02	k: 2485	n:160000
Cons ci ratio: 3.018705e-02	ci left: 9.390271e-02	ci right 9.678697e-02	k: 15254	n:160000
KS ci ratio: 1.070807e-01	ci left: 7.861256e-03	ci right 8.756698e-03	k: 1328	n:160000
DBH   160000 perm   44 sec   (3613 perm/sec)   p_kst 8.300000e-03   p_cons 9.533750e-02   p_joint 1.553125e-02

Joint ci ratio: 7.414418e-02	ci left: 1.557633e-02	ci right 1.678143e-02	k: 2749	n:170000
Cons ci ratio: 2.927820e-02	ci left: 9.398998e-02	ci right 9.678854e-02	k: 16215	n:170000
KS ci ratio: 1.037747e-01	ci left: 7.891379e-03	ci right 8.760808e-03	k: 1414	n:170000
DBH   170000 perm   48 sec   (3567 perm/sec)   p_kst 8.317647e-03   p_cons 9.538235e-02   p_joint 1.617059e-02

Joint ci ratio: 8.124933e-02	ci left: 1.224767e-02	ci right 1.329033e-02	k: 2297	n:180000
Cons ci ratio: 2.915975e-02	ci left: 8.990695e-02	ci right 9.257290e-02	k: 16422	n:180000
KS ci ratio: 1.008250e-01	ci left: 7.907699e-03	ci right 8.752695e-03	k: 1498	n:180000
DBH   180000 perm   51 sec   (3522 perm/sec)   p_kst 8.322222e-03   p_cons 9.123333e-02   p_joint 1.276111e-02

Joint ci ratio: 8.003463e-02	ci left: 1.196913e-02	ci right 1.297214e-02	k: 2368	n:190000
Cons ci ratio: 2.841033e-02	ci left: 8.977837e-02	ci right 9.237096e-02	k: 17303	n:190000
KS ci ratio: 9.871240e-02	ci left: 7.825057e-03	ci right 8.642685e-03	k: 1563	n:190000
DBH   190000 perm   55 sec   (3477 perm/sec)   p_kst 8.226316e-03   p_cons 9.106842e-02   p_joint 1.246316e-02

Outputting figure to mutsig2_images.part000000000047/DBH.5_1902_190000_0.0082263_0.091068_0.012463.png
                gene_name: DBH
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.0082 
        ci_ks_bounds_left: 0.0078 
       ci_ks_bounds_right: 0.0086 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 37 percent done.
DCAF12L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.080366e-02	ci left: 2.845862e-01	ci right 3.025342e-01	k: 2935	n:10000
Cons ci ratio: 9.607845e-02	ci left: 1.358015e-01	ci right 1.496073e-01	k: 1426	n:10000
KS ci ratio: 3.958796e-02	ci left: 4.851533e-01	ci right 5.048496e-01	k: 4950	n:10000
DCAF12L2   10000 perm   2 sec   (5770 perm/sec)   p_kst 4.950000e-01   p_cons 1.426000e-01   p_joint 2.935000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF12L2.5_1396_10000_0.495_0.1426_0.2935.png
                gene_name: DCAF12L2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 39 percent done.
DCDC1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.215005e-02	ci left: 5.881121e-01	ci right 6.074309e-01	k: 5978	n:10000
KS ci ratio: 2.058822e-02	ci left: 7.755997e-01	ci right 7.918347e-01	k: 7838	n:10000
DCDC1   10000 perm   2 sec   (5663 perm/sec)   p_kst 7.838000e-01   p_cons 5.978000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000047/DCDC1.4_1093_10000_0.7838_0.5978_1.png
                gene_name: DCDC1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
CYTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.332662e-02	ci left: 1.735958e-01	ci right 1.887903e-01	k: 1811	n:10000
Cons ci ratio: 6.509927e-02	ci left: 2.573588e-01	ci right 2.747777e-01	k: 2660	n:10000
KS ci ratio: 9.386443e-02	ci left: 1.414855e-01	ci right 1.555199e-01	k: 1484	n:10000
CYTL1   10000 perm   2 sec   (5490 perm/sec)   p_kst 1.484000e-01   p_cons 2.660000e-01   p_joint 1.811000e-01

Outputting figure to mutsig2_images.part000000000047/CYTL1.4_427_10000_0.1484_0.266_0.1811.png
                gene_name: CYTL1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 42 percent done.
DAK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.463999e-02	ci left: 4.255526e-01	ci right 4.450851e-01	k: 4353	n:10000
KS ci ratio: 1.185996e-02	ci left: 9.105972e-01	ci right 9.215590e-01	k: 9162	n:10000
DAK   10000 perm   2 sec   (5429 perm/sec)   p_kst 9.162000e-01   p_cons 4.353000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000047/DAK.4_1796_10000_0.9162_0.4353_1.png
                gene_name: DAK
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
DARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.798921e-02	ci left: 6.529346e-01	ci right 6.715708e-01	k: 6623	n:10000
Cons ci ratio: 3.047144e-02	ci left: 6.137180e-01	ci right 6.328101e-01	k: 6233	n:10000
KS ci ratio: 4.637988e-02	ci left: 4.069129e-01	ci right 4.263357e-01	k: 4166	n:10000
DARS   10000 perm   2 sec   (5802 perm/sec)   p_kst 4.166000e-01   p_cons 6.233000e-01   p_joint 6.623000e-01

Outputting figure to mutsig2_images.part000000000047/DARS.4_1570_10000_0.4166_0.6233_0.6623.png
                gene_name: DARS
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 46 percent done.
DBF4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.079994e-01	ci left: 1.100791e-01	ci right 1.227454e-01	k: 1163	n:10000
Cons ci ratio: 1.586988e-01	ci left: 5.292045e-02	ci right 6.213942e-02	k: 574	n:10000
KS ci ratio: 7.304386e-02	ci left: 2.153664e-01	ci right 2.317949e-01	k: 2235	n:10000
DBF4B   10000 perm   2 sec   (5901 perm/sec)   p_kst 2.235000e-01   p_cons 5.740000e-02   p_joint 1.163000e-01

Joint ci ratio: 7.520342e-02	ci left: 1.150842e-01	ci right 1.241267e-01	k: 2391	n:20000
Cons ci ratio: 1.131622e-01	ci left: 5.338848e-02	ci right 5.984119e-02	k: 1131	n:20000
KS ci ratio: 5.147988e-02	ci left: 2.189308e-01	ci right 2.305493e-01	k: 4494	n:20000
DBF4B   20000 perm   4 sec   (5231 perm/sec)   p_kst 2.247000e-01   p_cons 5.655000e-02   p_joint 1.195500e-01

Joint ci ratio: 5.471408e-02	ci left: 1.420880e-01	ci right 1.501140e-01	k: 4382	n:30000
Cons ci ratio: 9.225331e-02	ci left: 5.414196e-02	ci right 5.941095e-02	k: 1702	n:30000
KS ci ratio: 4.185517e-02	ci left: 2.214758e-01	ci right 2.309773e-01	k: 6786	n:30000
DBF4B   30000 perm   6 sec   (4968 perm/sec)   p_kst 2.262000e-01   p_cons 5.673333e-02   p_joint 1.460667e-01

Outputting figure to mutsig2_images.part000000000047/DBF4B.4_1949_30000_0.2262_0.056733_0.14607.png
                gene_name: DBF4B
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 47 percent done.
DCAF4L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.572663e-02	ci left: 1.366833e-01	ci right 1.505251e-01	k: 1435	n:10000
Cons ci ratio: 2.209987e-01	ci left: 2.712237e-02	ci right 3.395474e-02	k: 304	n:10000
KS ci ratio: 2.514891e-02	ci left: 6.993822e-01	ci right 7.172963e-01	k: 7084	n:10000
DCAF4L1   10000 perm   2 sec   (5816 perm/sec)   p_kst 7.084000e-01   p_cons 3.040000e-02   p_joint 1.435000e-01

Joint ci ratio: 8.228827e-02	ci left: 9.769141e-02	ci right 1.061247e-01	k: 2037	n:20000
Cons ci ratio: 1.552265e-01	ci left: 2.849702e-02	ci right 3.334063e-02	k: 617	n:20000
KS ci ratio: 1.787813e-02	ci left: 6.998325e-01	ci right 7.125075e-01	k: 14124	n:20000
DCAF4L1   20000 perm   4 sec   (4998 perm/sec)   p_kst 7.062000e-01   p_cons 3.085000e-02   p_joint 1.018500e-01

Joint ci ratio: 6.993391e-02	ci left: 9.147502e-02	ci right 9.813702e-02	k: 2843	n:30000
Cons ci ratio: 1.258353e-01	ci left: 2.935843e-02	ci right 3.333302e-02	k: 939	n:30000
KS ci ratio: 1.459404e-02	ci left: 7.011097e-01	ci right 7.114504e-01	k: 21189	n:30000
DCAF4L1   30000 perm   6 sec   (4807 perm/sec)   p_kst 7.063000e-01   p_cons 3.130000e-02   p_joint 9.476667e-02

Joint ci ratio: 5.844293e-02	ci left: 9.813759e-02	ci right 1.040705e-01	k: 4043	n:40000
Cons ci ratio: 1.077118e-01	ci left: 3.032112e-02	ci right 3.379725e-02	k: 1281	n:40000
KS ci ratio: 1.256655e-02	ci left: 7.041947e-01	ci right 7.131250e-01	k: 28347	n:40000
DCAF4L1   40000 perm   8 sec   (4752 perm/sec)   p_kst 7.086750e-01   p_cons 3.202500e-02   p_joint 1.010750e-01

Joint ci ratio: 4.502897e-02	ci left: 1.286483e-01	ci right 1.345945e-01	k: 6580	n:50000
Cons ci ratio: 9.623211e-02	ci left: 3.057220e-02	ci right 3.368243e-02	k: 1605	n:50000
KS ci ratio: 1.124901e-02	ci left: 7.043340e-01	ci right 7.123218e-01	k: 35417	n:50000
DCAF4L1   50000 perm   11 sec   (4680 perm/sec)   p_kst 7.083400e-01   p_cons 3.210000e-02   p_joint 1.316000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF4L1.4_1195_50000_0.70834_0.0321_0.1316.png
                gene_name: DCAF4L1
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 49 percent done.
DCAF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.799894e-03	ci left: 9.477308e-01	ci right 9.562034e-01	k: 9521	n:10000
KS ci ratio: 1.827391e-02	ci left: 8.138514e-01	ci right 8.289609e-01	k: 8215	n:10000
DCAF8   10000 perm   2 sec   (5888 perm/sec)   p_kst 8.215000e-01   p_cons 9.521000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000047/DCAF8.4_1842_10000_0.8215_0.9521_1.png
                gene_name: DCAF8
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
DCAF8L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.895237e-02	ci left: 6.375415e-01	ci right 6.563728e-01	k: 6470	n:10000
Cons ci ratio: 4.867731e-02	ci left: 3.837082e-01	ci right 4.029540e-01	k: 3933	n:10000
KS ci ratio: 2.544131e-02	ci left: 6.945411e-01	ci right 7.125402e-01	k: 7036	n:10000
DCAF8L1   10000 perm   2 sec   (5897 perm/sec)   p_kst 7.036000e-01   p_cons 3.933000e-01   p_joint 6.470000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF8L1.4_1807_10000_0.7036_0.3933_0.647.png
                gene_name: DCAF8L1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 53 percent done.
DCLK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.819582e-02	ci left: 5.030509e-01	ci right 5.227416e-01	k: 5129	n:10000
Cons ci ratio: 1.142247e-02	ci left: 9.163640e-01	ci right 9.269888e-01	k: 9218	n:10000
KS ci ratio: 6.931866e-02	ci left: 2.338293e-01	ci right 2.507211e-01	k: 2422	n:10000
DCLK3   10000 perm   2 sec   (5097 perm/sec)   p_kst 2.422000e-01   p_cons 9.218000e-01   p_joint 5.129000e-01

Outputting figure to mutsig2_images.part000000000047/DCLK3.4_1963_10000_0.2422_0.9218_0.5129.png
                gene_name: DCLK3
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 54 percent done.
DAGLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.012213e-02	ci left: 6.191440e-01	ci right 6.381810e-01	k: 6287	n:10000
Cons ci ratio: 5.019975e-02	ci left: 3.691794e-01	ci right 3.882913e-01	k: 3787	n:10000
KS ci ratio: 4.053366e-02	ci left: 4.733618e-01	ci right 4.930480e-01	k: 4832	n:10000
DAGLB   10000 perm   2 sec   (5437 perm/sec)   p_kst 4.832000e-01   p_cons 3.787000e-01   p_joint 6.287000e-01

Outputting figure to mutsig2_images.part000000000047/DAGLB.3_2079_10000_0.4832_0.3787_0.6287.png
                gene_name: DAGLB
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 56 percent done.
DAOA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.025127e-02	ci left: 6.171342e-01	ci right 6.361919e-01	k: 6267	n:10000
KS ci ratio: 1.928182e-02	ci left: 7.972992e-01	ci right 8.129226e-01	k: 8052	n:10000
DAOA   10000 perm   2 sec   (6278 perm/sec)   p_kst 8.052000e-01   p_cons 6.267000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000047/DAOA.3_587_10000_0.8052_0.6267_1.png
                gene_name: DAOA
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
DARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.404356e-02	ci left: 8.799154e-01	ci right 8.924587e-01	k: 8863	n:10000
Cons ci ratio: 3.902208e-02	ci left: 4.923508e-01	ci right 5.120479e-01	k: 5022	n:10000
KS ci ratio: 4.052554e-02	ci left: 4.734617e-01	ci right 4.931480e-01	k: 4833	n:10000
DARS2   10000 perm   2 sec   (5488 perm/sec)   p_kst 4.833000e-01   p_cons 5.022000e-01   p_joint 8.863000e-01

Outputting figure to mutsig2_images.part000000000047/DARS2.3_2006_10000_0.4833_0.5022_0.8863.png
                gene_name: DARS2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 60 percent done.
DBR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.676153e-02	ci left: 5.221621e-01	ci right 5.418192e-01	k: 5320	n:10000
Cons ci ratio: 1.254161e-02	ci left: 9.013439e-01	ci right 9.128177e-01	k: 9072	n:10000
KS ci ratio: 5.693376e-02	ci left: 3.123490e-01	ci right 3.307550e-01	k: 3215	n:10000
DBR1   10000 perm   2 sec   (6111 perm/sec)   p_kst 3.215000e-01   p_cons 9.072000e-01   p_joint 5.320000e-01

Outputting figure to mutsig2_images.part000000000047/DBR1.3_1667_10000_0.3215_0.9072_0.532.png
                gene_name: DBR1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 61 percent done.
DCAF12L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.686127e-02	ci left: 8.366363e-01	ci right 8.509628e-01	k: 8439	n:10000
Cons ci ratio: 3.827998e-02	ci left: 5.019507e-01	ci right 5.216425e-01	k: 5118	n:10000
KS ci ratio: 1.042617e-02	ci left: 9.289561e-01	ci right 9.387893e-01	k: 9340	n:10000
DCAF12L1   10000 perm   2 sec   (5922 perm/sec)   p_kst 9.340000e-01   p_cons 5.118000e-01   p_joint 8.439000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF12L1.3_1396_10000_0.934_0.5118_0.8439.png
                gene_name: DCAF12L1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 63 percent done.
DCAF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.303600e-02	ci left: 7.346186e-01	ci right 7.518395e-01	k: 7433	n:10000
KS ci ratio: 2.747163e-02	ci left: 6.612896e-01	ci right 6.798110e-01	k: 6706	n:10000
DCAF17   10000 perm   2 sec   (6032 perm/sec)   p_kst 6.706000e-01   p_cons 7.433000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000047/DCAF17.3_1619_10000_0.6706_0.7433_1.png
                gene_name: DCAF17
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
DCAF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.491369e-02	ci left: 8.669281e-01	ci right 8.800535e-01	k: 8736	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
DCAF4   10000 perm   2 sec   (5846 perm/sec)   p_kst 1   p_cons 8.736000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000047/DCAF4.3_1543_10000_1_0.8736_1.png
                gene_name: DCAF4
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
DCAF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.527199e-02	ci left: 4.186732e-01	ci right 4.381685e-01	k: 4284	n:10000
Cons ci ratio: 1.054524e-01	ci left: 1.149621e-01	ci right 1.278593e-01	k: 1213	n:10000
KS ci ratio: 1.094056e-02	ci left: 9.225516e-01	ci right 9.327976e-01	k: 9278	n:10000
DCAF7   10000 perm   2 sec   (6295 perm/sec)   p_kst 9.278000e-01   p_cons 1.213000e-01   p_joint 4.284000e-01

Joint ci ratio: 3.250347e-02	ci left: 4.141444e-01	ci right 4.278786e-01	k: 8420	n:20000
Cons ci ratio: 7.547245e-02	ci left: 1.143465e-01	ci right 1.233646e-01	k: 2376	n:20000
KS ci ratio: 7.765941e-03	ci left: 9.235630e-01	ci right 9.308123e-01	k: 18545	n:20000
DCAF7   20000 perm   4 sec   (5402 perm/sec)   p_kst 9.272500e-01   p_cons 1.188000e-01   p_joint 4.210000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF7.3_1058_20000_0.92725_0.1188_0.421.png
                gene_name: DCAF7
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 68 percent done.
CYTH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.244911e-01	ci left: 8.455810e-02	ci right 9.588194e-02	k: 901	n:10000
KS ci ratio: 2.998681e-02	ci left: 6.212544e-01	ci right 6.402693e-01	k: 6308	n:10000
CYTH1   10000 perm   2 sec   (6551 perm/sec)   p_kst 6.308000e-01   p_cons 9.010000e-02   p_joint 1

Joint ci ratio: 8.329303e-02	ci left: 9.553217e-02	ci right 1.038846e-01	k: 1993	n:20000
Cons ci ratio: 9.004739e-02	ci left: 8.263952e-02	ci right 9.048117e-02	k: 1730	n:20000
KS ci ratio: 2.120032e-02	ci left: 6.241685e-01	ci right 6.375934e-01	k: 12618	n:20000
CYTH1   20000 perm   3 sec   (5805 perm/sec)   p_kst 6.309000e-01   p_cons 8.650000e-02   p_joint 9.965000e-02

Outputting figure to mutsig2_images.part000000000047/CYTH1.2_1249_20000_0.6309_0.0865_0.09965.png
                gene_name: CYTH1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.100 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 70 percent done.
CYTH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.771079e-02	ci left: 8.230004e-01	ci right 8.378066e-01	k: 8305	n:10000
Cons ci ratio: 3.834897e-02	ci left: 5.010505e-01	ci right 5.207431e-01	k: 5109	n:10000
KS ci ratio: 2.331969e-02	ci left: 7.298693e-01	ci right 7.471916e-01	k: 7386	n:10000
CYTH3   10000 perm   2 sec   (6608 perm/sec)   p_kst 7.386000e-01   p_cons 5.109000e-01   p_joint 8.305000e-01

Outputting figure to mutsig2_images.part000000000047/CYTH3.2_1252_10000_0.7386_0.5109_0.8305.png
                gene_name: CYTH3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 72 percent done.
CYTIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.226371e-02	ci left: 7.475594e-01	ci right 7.644912e-01	k: 7561	n:10000
KS ci ratio: 2.745299e-02	ci left: 6.615916e-01	ci right 6.801087e-01	k: 6709	n:10000
CYTIP   10000 perm   2 sec   (6040 perm/sec)   p_kst 6.709000e-01   p_cons 7.561000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000047/CYTIP.2_1112_10000_0.6709_0.7561_1.png
                gene_name: CYTIP
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
CYTSA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.858578e-02	ci left: 6.433756e-01	ci right 6.621354e-01	k: 6528	n:10000
KS ci ratio: 2.759606e-02	ci left: 6.592760e-01	ci right 6.778257e-01	k: 6686	n:10000
CYTSA   10000 perm   2 sec   (4877 perm/sec)   p_kst 6.686000e-01   p_cons 6.528000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000047/CYTSA.2_3414_10000_0.6686_0.6528_1.png
                gene_name: CYTSA
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
D4S234E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.640474e-02	ci left: 8.438687e-01	ci right 8.579262e-01	k: 8510	n:10000
Cons ci ratio: 4.281715e-02	ci left: 4.461024e-01	ci right 4.657233e-01	k: 4559	n:10000
KS ci ratio: 2.177474e-02	ci left: 7.557537e-01	ci right 7.724921e-01	k: 7642	n:10000
D4S234E   10000 perm   1 sec   (6910 perm/sec)   p_kst 7.642000e-01   p_cons 4.559000e-01   p_joint 8.510000e-01

Outputting figure to mutsig2_images.part000000000047/D4S234E.2_574_10000_0.7642_0.4559_0.851.png
                gene_name: D4S234E
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 77 percent done.
DAAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.953441e-02	ci left: 3.754476e-01	ci right 3.946195e-01	k: 3850	n:10000
Cons ci ratio: 1.276264e-01	ci left: 8.067319e-02	ci right 9.176924e-02	k: 861	n:10000
KS ci ratio: 9.205164e-02	ci left: 1.463885e-01	ci right 1.606140e-01	k: 1534	n:10000
DAAM1   10000 perm   2 sec   (5215 perm/sec)   p_kst 1.534000e-01   p_cons 8.610000e-02   p_joint 3.850000e-01

Joint ci ratio: 8.034850e-02	ci left: 1.020608e-01	ci right 1.106540e-01	k: 2126	n:20000
Cons ci ratio: 9.097100e-02	ci left: 8.107257e-02	ci right 8.884859e-02	k: 1698	n:20000
KS ci ratio: 6.540627e-02	ci left: 1.472474e-01	ci right 1.572539e-01	k: 3044	n:20000
DAAM1   20000 perm   4 sec   (4753 perm/sec)   p_kst 1.522000e-01   p_cons 8.490000e-02   p_joint 1.063000e-01

Outputting figure to mutsig2_images.part000000000047/DAAM1.2_3337_20000_0.1522_0.0849_0.1063.png
                gene_name: DAAM1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 79 percent done.
DAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.169081e-02	ci left: 5.950381e-01	ci right 6.143009e-01	k: 6047	n:10000
KS ci ratio: 2.698805e-02	ci left: 6.691442e-01	ci right 6.875518e-01	k: 6784	n:10000
DAD1   10000 perm   2 sec   (5113 perm/sec)   p_kst 6.784000e-01   p_cons 6.047000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000047/DAD1.2_350_10000_0.6784_0.6047_1.png
                gene_name: DAD1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
DAGLA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.659627e-02	ci left: 3.149289e-01	ci right 3.333736e-01	k: 3241	n:10000
Cons ci ratio: 1.227782e-01	ci left: 8.679344e-02	ci right 9.824521e-02	k: 924	n:10000
KS ci ratio: 3.892077e-02	ci left: 4.936506e-01	ci right 5.133474e-01	k: 5035	n:10000
DAGLA   10000 perm   2 sec   (5721 perm/sec)   p_kst 5.035000e-01   p_cons 9.240000e-02   p_joint 3.241000e-01

Joint ci ratio: 6.868451e-02	ci left: 1.352187e-01	ci right 1.448862e-01	k: 2800	n:20000
Cons ci ratio: 8.173122e-02	ci left: 9.891852e-02	ci right 1.073972e-01	k: 2062	n:20000
KS ci ratio: 2.762520e-02	ci left: 4.946957e-01	ci right 5.086038e-01	k: 10033	n:20000
DAGLA   20000 perm   4 sec   (5079 perm/sec)   p_kst 5.016500e-01   p_cons 1.031000e-01   p_joint 1.400000e-01

Outputting figure to mutsig2_images.part000000000047/DAGLA.2_3205_20000_0.50165_0.1031_0.14.png
                gene_name: DAGLA
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 82 percent done.
DALRD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.669586e-03	ci left: 9.766355e-01	ci right 9.822803e-01	k: 9796	n:10000
KS ci ratio: 2.090974e-02	ci left: 7.702306e-01	ci right 7.866069e-01	k: 7785	n:10000
DALRD3   10000 perm   2 sec   (6126 perm/sec)   p_kst 7.785000e-01   p_cons 9.796000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000047/DALRD3.2_1680_10000_0.7785_0.9796_1.png
                gene_name: DALRD3
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
DAPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.631913e-01	ci left: 1.884073e-02	ci right 2.464254e-02	k: 216	n:10000
Cons ci ratio: 6.489987e-02	ci left: 2.585460e-01	ci right 2.759898e-01	k: 2672	n:10000
KS ci ratio: 3.442409e-01	ci left: 1.059811e-02	ci right 1.509234e-02	k: 127	n:10000
DAPP1   10000 perm   1 sec   (6949 perm/sec)   p_kst 1.270000e-02   p_cons 2.672000e-01   p_joint 2.160000e-02

Joint ci ratio: 1.911204e-01	ci left: 1.862872e-02	ci right 2.261236e-02	k: 411	n:20000
Cons ci ratio: 4.741532e-02	ci left: 2.486231e-01	ci right 2.607483e-01	k: 5093	n:20000
KS ci ratio: 2.494107e-01	ci left: 1.067791e-02	ci right 1.376634e-02	k: 243	n:20000
DAPP1   20000 perm   3 sec   (5996 perm/sec)   p_kst 1.215000e-02   p_cons 2.546500e-01   p_joint 2.055000e-02

Joint ci ratio: 8.438700e-02	ci left: 6.426150e-02	ci right 6.995601e-02	k: 2012	n:30000
Cons ci ratio: 3.691707e-02	ci left: 2.680968e-01	ci right 2.782138e-01	k: 8194	n:30000
KS ci ratio: 2.022506e-01	ci left: 1.111515e-02	ci right 1.364726e-02	k: 370	n:30000
DAPP1   30000 perm   5 sec   (5665 perm/sec)   p_kst 1.233333e-02   p_cons 2.731333e-01   p_joint 6.706667e-02

Joint ci ratio: 7.403216e-02	ci left: 6.307000e-02	ci right 6.794331e-02	k: 2619	n:40000
Cons ci ratio: 3.209371e-02	ci left: 2.672703e-01	ci right 2.760129e-01	k: 10865	n:40000
KS ci ratio: 1.770984e-01	ci left: 1.102769e-02	ci right 1.319401e-02	k: 483	n:40000
DAPP1   40000 perm   7 sec   (5455 perm/sec)   p_kst 1.207500e-02   p_cons 2.716250e-01   p_joint 6.547500e-02

Joint ci ratio: 7.527991e-02	ci left: 4.950026e-02	ci right 5.339202e-02	k: 2571	n:50000
Cons ci ratio: 2.870768e-02	ci left: 2.677047e-01	ci right 2.755218e-01	k: 13580	n:50000
KS ci ratio: 1.597437e-01	ci left: 1.094874e-02	ci right 1.286855e-02	k: 594	n:50000
DAPP1   50000 perm   9 sec   (5290 perm/sec)   p_kst 1.188000e-02   p_cons 2.716000e-01   p_joint 5.142000e-02

Joint ci ratio: 6.870218e-02	ci left: 4.969575e-02	ci right 5.324779e-02	k: 3087	n:60000
Cons ci ratio: 2.621879e-02	ci left: 2.678613e-01	ci right 2.749942e-01	k: 16285	n:60000
KS ci ratio: 1.480448e-01	ci left: 1.069435e-02	ci right 1.242005e-02	k: 692	n:60000
DAPP1   60000 perm   12 sec   (5149 perm/sec)   p_kst 1.153333e-02   p_cons 2.714167e-01   p_joint 5.145000e-02

Joint ci ratio: 6.155816e-02	ci left: 5.306905e-02	ci right 5.645369e-02	k: 3832	n:70000
Cons ci ratio: 2.428295e-02	ci left: 2.679801e-01	ci right 2.745817e-01	k: 18989	n:70000
KS ci ratio: 1.377107e-01	ci left: 1.065432e-02	ci right 1.224370e-02	k: 800	n:70000
DAPP1   70000 perm   14 sec   (5008 perm/sec)   p_kst 1.142857e-02   p_cons 2.712714e-01   p_joint 5.474286e-02

Joint ci ratio: 5.842367e-02	ci left: 5.171640e-02	ci right 5.484109e-02	k: 4261	n:80000
Cons ci ratio: 2.270591e-02	ci left: 2.683456e-01	ci right 2.745210e-01	k: 21714	n:80000
KS ci ratio: 1.294929e-01	ci left: 1.059117e-02	ci right 1.206959e-02	k: 905	n:80000
DAPP1   80000 perm   16 sec   (4922 perm/sec)   p_kst 1.131250e-02   p_cons 2.714250e-01   p_joint 5.326250e-02

Joint ci ratio: 5.512340e-02	ci left: 5.173163e-02	ci right 5.467503e-02	k: 4787	n:90000
Cons ci ratio: 2.141599e-02	ci left: 2.683638e-01	ci right 2.741843e-01	k: 24414	n:90000
KS ci ratio: 1.210258e-01	ci left: 1.082443e-02	ci right 1.222954e-02	k: 1036	n:90000
DAPP1   90000 perm   19 sec   (4834 perm/sec)   p_kst 1.151111e-02   p_cons 2.712667e-01   p_joint 5.318889e-02

Joint ci ratio: 5.251397e-02	ci left: 5.139229e-02	ci right 5.417373e-02	k: 5277	n:100000
Cons ci ratio: 2.031225e-02	ci left: 2.686057e-01	ci right 2.741276e-01	k: 27136	n:100000
KS ci ratio: 1.151809e-01	ci left: 1.079008e-02	ci right 1.211848e-02	k: 1144	n:100000
DAPP1   100000 perm   21 sec   (4740 perm/sec)   p_kst 1.144000e-02   p_cons 2.713600e-01   p_joint 5.277000e-02

Joint ci ratio: 5.631421e-02	ci left: 4.100152e-02	ci right 4.338633e-02	k: 4640	n:110000
Cons ci ratio: 1.937130e-02	ci left: 2.686468e-01	ci right 2.739107e-01	k: 29840	n:110000
KS ci ratio: 1.099312e-01	ci left: 1.079869e-02	ci right 1.206363e-02	k: 1256	n:110000
DAPP1   110000 perm   24 sec   (4646 perm/sec)   p_kst 1.141818e-02   p_cons 2.712727e-01   p_joint 4.218182e-02

Joint ci ratio: 5.418498e-02	ci left: 4.065814e-02	ci right 4.293074e-02	k: 5014	n:120000
Cons ci ratio: 1.858727e-02	ci left: 2.678967e-01	ci right 2.729311e-01	k: 32449	n:120000
KS ci ratio: 1.053395e-01	ci left: 1.080702e-02	ci right 1.201677e-02	k: 1368	n:120000
DAPP1   120000 perm   26 sec   (4555 perm/sec)   p_kst 1.140000e-02   p_cons 2.704083e-01   p_joint 4.178333e-02

Joint ci ratio: 5.913878e-02	ci left: 3.172464e-02	ci right 3.366551e-02	k: 4249	n:130000
Cons ci ratio: 1.785779e-02	ci left: 2.680022e-01	ci right 2.728388e-01	k: 35154	n:130000
KS ci ratio: 1.001897e-01	ci left: 1.105501e-02	ci right 1.222847e-02	k: 1512	n:130000
DAPP1   130000 perm   29 sec   (4474 perm/sec)   p_kst 1.163077e-02   p_cons 2.704154e-01   p_joint 3.268462e-02

Joint ci ratio: 5.015141e-02	ci left: 4.076465e-02	ci right 4.286867e-02	k: 5853	n:140000
Cons ci ratio: 1.720391e-02	ci left: 2.681885e-01	ci right 2.728495e-01	k: 37872	n:140000
KS ci ratio: 9.661675e-02	ci left: 1.105961e-02	ci right 1.218932e-02	k: 1626	n:140000
DAPP1   140000 perm   32 sec   (4376 perm/sec)   p_kst 1.161429e-02   p_cons 2.705143e-01   p_joint 4.180714e-02

Outputting figure to mutsig2_images.part000000000047/DAPP1.2_879_140000_0.011614_0.27051_0.041807.png
                gene_name: DAPP1
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.043 

Current progress: 86 percent done.
DARC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.221246e-01	ci left: 8.766844e-02	ci right 9.916968e-02	k: 933	n:10000
Cons ci ratio: 8.537640e-02	ci left: 1.666153e-01	ci right 1.815750e-01	k: 1740	n:10000
KS ci ratio: 1.775008e-01	ci left: 4.235985e-02	ci right 5.070688e-02	k: 464	n:10000
DARC   10000 perm   1 sec   (6798 perm/sec)   p_kst 4.640000e-02   p_cons 1.740000e-01   p_joint 9.330000e-02

Joint ci ratio: 9.425271e-02	ci left: 7.583612e-02	ci right 8.338663e-02	k: 1591	n:20000
Cons ci ratio: 6.050791e-02	ci left: 1.681758e-01	ci right 1.787193e-01	k: 3468	n:20000
KS ci ratio: 1.279880e-01	ci left: 4.192594e-02	ci right 4.770733e-02	k: 895	n:20000
DARC   20000 perm   3 sec   (5781 perm/sec)   p_kst 4.475000e-02   p_cons 1.734000e-01   p_joint 7.955000e-02

Joint ci ratio: 7.342332e-02	ci left: 8.357201e-02	ci right 8.997494e-02	k: 2602	n:30000
Cons ci ratio: 4.931591e-02	ci left: 1.696591e-01	ci right 1.782708e-01	k: 5218	n:30000
KS ci ratio: 1.057862e-01	ci left: 4.144684e-02	ci right 4.610870e-02	k: 1312	n:30000
DARC   30000 perm   5 sec   (5548 perm/sec)   p_kst 4.373333e-02   p_cons 1.739333e-01   p_joint 8.673333e-02

Joint ci ratio: 6.388612e-02	ci left: 8.327011e-02	ci right 8.879017e-02	k: 3440	n:40000
Cons ci ratio: 4.280826e-02	ci left: 1.695772e-01	ci right 1.770203e-01	k: 6931	n:40000
KS ci ratio: 9.182436e-02	ci left: 4.157064e-02	ci right 4.559596e-02	k: 1742	n:40000
DARC   40000 perm   7 sec   (5386 perm/sec)   p_kst 4.355000e-02   p_cons 1.732750e-01   p_joint 8.600000e-02

Outputting figure to mutsig2_images.part000000000047/DARC.2_1046_40000_0.04355_0.17328_0.086.png
                gene_name: DARC
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.089 

Current progress: 88 percent done.
DAZL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.687682e-02	ci left: 6.709573e-01	ci right 6.893377e-01	k: 6802	n:10000
Cons ci ratio: 3.215005e-02	ci left: 5.881121e-01	ci right 6.074309e-01	k: 5978	n:10000
KS ci ratio: 3.886633e-02	ci left: 4.943505e-01	ci right 5.140471e-01	k: 5042	n:10000
DAZL   10000 perm   2 sec   (6515 perm/sec)   p_kst 5.042000e-01   p_cons 5.978000e-01   p_joint 6.802000e-01

Outputting figure to mutsig2_images.part000000000047/DAZL.2_932_10000_0.5042_0.5978_0.6802.png
                gene_name: DAZL
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 89 percent done.
DBX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.631022e-02	ci left: 6.802263e-01	ci right 6.984633e-01	k: 6894	n:10000
KS ci ratio: 1.771708e-02	ci left: 8.228987e-01	ci right 8.377084e-01	k: 8304	n:10000
DBX2   10000 perm   2 sec   (6447 perm/sec)   p_kst 8.304000e-01   p_cons 6.894000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000047/DBX2.2_1036_10000_0.8304_0.6894_1.png
                gene_name: DBX2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
DCAF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.276662e-02	ci left: 1.444270e-01	ci right 1.585767e-01	k: 1514	n:10000
Cons ci ratio: 2.571973e-01	ci left: 1.977670e-02	ci right 2.570584e-02	k: 226	n:10000
KS ci ratio: 9.131878e-03	ci left: 9.440897e-01	ci right 9.528467e-01	k: 9486	n:10000
DCAF11   10000 perm   2 sec   (6286 perm/sec)   p_kst 9.486000e-01   p_cons 2.260000e-02   p_joint 1.514000e-01

Joint ci ratio: 5.445128e-02	ci left: 2.001656e-01	ci right 2.114201e-01	k: 4115	n:20000
Cons ci ratio: 1.796557e-01	ci left: 2.115822e-02	ci right 2.538195e-02	k: 464	n:20000
KS ci ratio: 6.464645e-03	ci left: 9.452947e-01	ci right 9.514741e-01	k: 18969	n:20000
DCAF11   20000 perm   4 sec   (5462 perm/sec)   p_kst 9.484500e-01   p_cons 2.320000e-02   p_joint 2.057500e-01

Joint ci ratio: 4.994269e-02	ci left: 1.660948e-01	ci right 1.746358e-01	k: 5110	n:30000
Cons ci ratio: 1.450478e-01	ci left: 2.204044e-02	ci right 2.551929e-02	k: 712	n:30000
KS ci ratio: 5.309077e-03	ci left: 9.452908e-01	ci right 9.503553e-01	k: 28436	n:30000
DCAF11   30000 perm   6 sec   (5171 perm/sec)   p_kst 9.478667e-01   p_cons 2.373333e-02   p_joint 1.703333e-01

Joint ci ratio: 4.308673e-02	ci left: 1.677431e-01	ci right 1.751547e-01	k: 6857	n:40000
Cons ci ratio: 1.253233e-01	ci left: 2.237687e-02	ci right 2.539280e-02	k: 954	n:40000
KS ci ratio: 4.577322e-03	ci left: 9.460849e-01	ci right 9.504498e-01	k: 37932	n:40000
DCAF11   40000 perm   8 sec   (4993 perm/sec)   p_kst 9.483000e-01   p_cons 2.385000e-02   p_joint 1.714250e-01

Joint ci ratio: 3.858554e-02	ci left: 1.677884e-01	ci right 1.744099e-01	k: 8554	n:50000
Cons ci ratio: 1.117457e-01	ci left: 2.267618e-02	ci right 2.537947e-02	k: 1200	n:50000
KS ci ratio: 4.078040e-03	ci left: 9.467098e-01	ci right 9.505980e-01	k: 47434	n:50000
DCAF11   50000 perm   10 sec   (4862 perm/sec)   p_kst 9.486800e-01   p_cons 2.400000e-02   p_joint 1.710800e-01

Joint ci ratio: 3.519884e-02	ci left: 1.682763e-01	ci right 1.743222e-01	k: 10277	n:60000
Cons ci ratio: 1.012279e-01	ci left: 2.314767e-02	ci right 2.563196e-02	k: 1462	n:60000
KS ci ratio: 3.726322e-03	ci left: 9.467861e-01	ci right 9.503370e-01	k: 56915	n:60000
DCAF11   60000 perm   13 sec   (4725 perm/sec)   p_kst 9.485833e-01   p_cons 2.436667e-02   p_joint 1.712833e-01

Joint ci ratio: 3.262887e-02	ci left: 1.681464e-01	ci right 1.737380e-01	k: 11965	n:70000
Cons ci ratio: 9.488881e-02	ci left: 2.266951e-02	ci right 2.494163e-02	k: 1665	n:70000
KS ci ratio: 3.458839e-03	ci left: 9.466629e-01	ci right 9.499570e-01	k: 66383	n:70000
DCAF11   70000 perm   15 sec   (4561 perm/sec)   p_kst 9.483286e-01   p_cons 2.378571e-02   p_joint 1.709286e-01

Outputting figure to mutsig2_images.part000000000047/DCAF11.2_1697_70000_0.94833_0.023786_0.17093.png
                gene_name: DCAF11
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 93 percent done.
DCAF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.655961e-02	ci left: 8.414233e-01	ci right 8.555730e-01	k: 8486	n:10000
Cons ci ratio: 3.889743e-02	ci left: 4.939506e-01	ci right 5.136472e-01	k: 5038	n:10000
KS ci ratio: 2.341629e-02	ci left: 7.282528e-01	ci right 7.456090e-01	k: 7370	n:10000
DCAF12   10000 perm   2 sec   (6608 perm/sec)   p_kst 7.370000e-01   p_cons 5.038000e-01   p_joint 8.486000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF12.2_1398_10000_0.737_0.5038_0.8486.png
                gene_name: DCAF12
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 95 percent done.
DCAF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.219262e-02	ci left: 4.533887e-01	ci right 4.730328e-01	k: 4632	n:10000
Cons ci ratio: 5.739775e-03	ci left: 9.761027e-01	ci right 9.818135e-01	k: 9791	n:10000
KS ci ratio: 9.643344e-02	ci left: 1.349198e-01	ci right 1.486895e-01	k: 1417	n:10000
DCAF5   10000 perm   2 sec   (5176 perm/sec)   p_kst 1.417000e-01   p_cons 9.791000e-01   p_joint 4.632000e-01

Outputting figure to mutsig2_images.part000000000047/DCAF5.2_2865_10000_0.1417_0.9791_0.4632.png
                gene_name: DCAF5
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 96 percent done.
DCBLD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.091734e-03	ci left: 9.808076e-01	ci right 9.859052e-01	k: 9835	n:10000
Cons ci ratio: 2.778304e-02	ci left: 6.562561e-01	ci right 6.748474e-01	k: 6656	n:10000
KS ci ratio: 4.266216e-02	ci left: 4.478988e-01	ci right 4.675258e-01	k: 4577	n:10000
DCBLD2   10000 perm   2 sec   (6093 perm/sec)   p_kst 4.577000e-01   p_cons 6.656000e-01   p_joint 9.835000e-01

Outputting figure to mutsig2_images.part000000000047/DCBLD2.2_2392_10000_0.4577_0.6656_0.9835.png
                gene_name: DCBLD2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 98 percent done.
DCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.426074e-02	ci left: 4.297410e-01	ci right 4.492943e-01	k: 4395	n:10000
KS ci ratio: 6.948898e-02	ci left: 2.329402e-01	ci right 2.498108e-01	k: 2413	n:10000
DCK   10000 perm   2 sec   (5233 perm/sec)   p_kst 2.413000e-01   p_cons 4.395000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000047/DCK.2_811_10000_0.2413_0.4395_1.png
                gene_name: DCK
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000047
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 47 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1707>
Subject: Job 9893906: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1707>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000048> was used as the working directory.
Started at Sat Oct  6 00:04:56 2012
Results reported at Sat Oct  6 00:14:39 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000048.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000048.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 48  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000048.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    605.11 sec.
    Max Memory :      3550 MB
    Max Swap   :      5972 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
48
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 48
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 48: processing genes 4238 - 4327
Calculating significance of each gene.
Using projection method.
4238	DCLRE1A	1.239308e-01
4239	DCLRE1B	7.454001e-01
4240	DCLRE1C	3.727043e-01
4241	DCN	6.413268e-02
4242	DCP1A	9.287632e-01
4243	DCP1B	5.425994e-01
4244	DCP2	5.184267e-02
4245	DCPS	3.660046e-01
4246	DCST1	9.117159e-01
4247	DCST2	5.896236e-02
4248	DCT	2.457294e-02
4249	DCTD	3.645639e-02
4250	DCTN1	9.725512e-01
4251	DCTN2	7.331433e-02
4252	DCTN3	5.230462e-01
4253	DCTN4	8.558807e-01
4254	DCTN5	1
4255	DCTN6	1
4256	DCTPP1	5.813564e-02
4257	DCUN1D1	1.869599e-01
4258	DCUN1D2	6.505770e-01
4259	DCUN1D3	3.308271e-01
4260	DCUN1D4	4.843192e-01
4261	DCUN1D5	1
4262	DCX	4.590285e-02
4263	DCXR	1
4264	DDA1	2.680794e-01
4265	DDAH1	1
4266	DDAH2	1
4267	DDB1	7.728981e-01
4268	DDB2	8.497918e-01
4269	DDC	7.772707e-01
4270	DDHD1	9.742010e-01
4271	DDHD2	5.948377e-01
4272	DDI1	7.654344e-03
4273	DDI2	4.680311e-01
4274	DDIT3	1
4275	DDIT4	1
4276	DDIT4L	5.749076e-01
4277	DDN	1
4278	DDO	4.875295e-01
4279	DDOST	6.184386e-01
4280	DDR1	9.171479e-01
4281	DDR2	5.430955e-01
4282	DDRGK1	7.120516e-01
4283	DDTL	1
4284	DDX1	3.144472e-01
4285	DDX10	9.790610e-01
4286	DDX11	6.926441e-01
In gene DDX17 the following bins exceed PROBCAP:
    COAD-AA-3852	categ 6	N = 2140    n = 1	mu =   3.62e-07
4287	DDX17	1.276048e-01
4288	DDX18	7.185294e-01
4289	DDX19A	4.965362e-01
4290	DDX19B	3.594168e-01
4291	DDX20	7.042210e-01
4292	DDX21	5.788776e-01
4293	DDX23	6.113096e-01
In gene DDX24 the following bins exceed PROBCAP:
    COAD-AA-A01I	categ 6	N = 2612    n = 1	mu =   3.29e-07
4294	DDX24	5.194708e-01
4295	DDX25	8.756726e-01
4296	DDX26B	9.059645e-01
4297	DDX27	1.450465e-01
4298	DDX28	8.158046e-01
4299	DDX31	8.474229e-01
4300	DDX39	1
4301	DDX3X	8.778594e-01
4302	DDX3Y	1
4303	DDX4	7.785776e-01
4304	DDX41	7.991180e-01
4305	DDX42	6.764099e-01
4306	DDX43	8.504299e-01
4307	DDX46	7.296651e-01
4308	DDX47	4.566838e-01
4309	DDX49	5.483503e-01
4310	DDX5	7.457506e-01
4311	DDX50	5.953614e-01
4312	DDX51	1
4313	DDX52	7.820273e-01
4314	DDX53	8.177804e-01
4315	DDX54	8.124542e-01
4316	DDX55	3.851549e-01
4317	DDX56	1.520435e-01
4318	DDX58	1.385655e-02
4319	DDX59	5.972550e-01
4320	DDX6	2.153132e-01
4321	DDX60	4.377658e-01
4322	DDX60L	9.775219e-01
4323	DEAF1	9.494176e-01
4324	DEC1	1.097415e-01
4325	DECR1	1.213765e-01
4326	DECR2	6.889668e-01
4327	DEDD	8.871069e-01
Done

Running MutSig 2:
Scatter job 48: processing genes 4238 - 4327
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DCT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.133354e-02	ci left: 7.631424e-01	ci right 7.796992e-01	k: 7715	n:10000
Cons ci ratio: 4.769225e-02	ci left: 3.934654e-01	ci right 4.127911e-01	k: 4031	n:10000
KS ci ratio: 1.218871e-02	ci left: 9.061740e-01	ci right 9.173848e-01	k: 9119	n:10000
DCT   10000 perm   2 sec   (4847 perm/sec)   p_kst 9.119000e-01   p_cons 4.031000e-01   p_joint 7.715000e-01

Outputting figure to mutsig2_images.part000000000048/DCT.13_1699_10000_0.9119_0.4031_0.7715.png
                gene_name: DCT
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 2 percent done.
DDX60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.379086e-02	ci left: 7.219903e-01	ci right 7.394751e-01	k: 7308	n:10000
Cons ci ratio: 1.678445e-02	ci left: 8.378583e-01	ci right 8.521401e-01	k: 8451	n:10000
KS ci ratio: 2.991605e-02	ci left: 6.223600e-01	ci right 6.413631e-01	k: 6319	n:10000
DDX60   10000 perm   3 sec   (3992 perm/sec)   p_kst 6.319000e-01   p_cons 8.451000e-01   p_joint 7.308000e-01

Outputting figure to mutsig2_images.part000000000048/DDX60.12_5287_10000_0.6319_0.8451_0.7308.png
                gene_name: DDX60
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 3 percent done.
DCST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.690767e-02	ci left: 3.125475e-01	ci right 3.309565e-01	k: 3217	n:10000
Cons ci ratio: 6.102425e-02	ci left: 2.831000e-01	ci right 3.010213e-01	k: 2920	n:10000
KS ci ratio: 7.439508e-02	ci left: 2.091515e-01	ci right 2.254135e-01	k: 2172	n:10000
DCST2   10000 perm   2 sec   (5336 perm/sec)   p_kst 2.172000e-01   p_cons 2.920000e-01   p_joint 3.217000e-01

Outputting figure to mutsig2_images.part000000000048/DCST2.10_2382_10000_0.2172_0.292_0.3217.png
                gene_name: DCST2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 5 percent done.
DCLRE1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.335816e-03	ci left: 9.790923e-01	ci right 9.844218e-01	k: 9819	n:10000
Cons ci ratio: 3.159149e-02	ci left: 5.965440e-01	ci right 6.157941e-01	k: 6062	n:10000
KS ci ratio: 9.317333e-03	ci left: 9.420117e-01	ci right 9.509260e-01	k: 9466	n:10000
DCLRE1A   10000 perm   2 sec   (4963 perm/sec)   p_kst 9.466000e-01   p_cons 6.062000e-01   p_joint 9.819000e-01

Outputting figure to mutsig2_images.part000000000048/DCLRE1A.9_3159_10000_0.9466_0.6062_0.9819.png
                gene_name: DCLRE1A
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 7 percent done.
DDI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.729419e-02	ci left: 8.297144e-01	ci right 8.442887e-01	k: 8371	n:10000
Cons ci ratio: 1.445118e-02	ci left: 8.738790e-01	ci right 8.866985e-01	k: 8804	n:10000
KS ci ratio: 2.327139e-02	ci left: 7.306776e-01	ci right 7.479828e-01	k: 7394	n:10000
DDI1   10000 perm   2 sec   (5766 perm/sec)   p_kst 7.394000e-01   p_cons 8.804000e-01   p_joint 8.371000e-01

Outputting figure to mutsig2_images.part000000000048/DDI1.9_1195_10000_0.7394_0.8804_0.8371.png
                gene_name: DDI1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 8 percent done.
DDX58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.281275e-02	ci left: 7.383583e-01	ci right 7.554977e-01	k: 7470	n:10000
KS ci ratio: 1.421704e-02	ci left: 8.773570e-01	ci right 8.900186e-01	k: 8838	n:10000
DDX58   10000 perm   2 sec   (4746 perm/sec)   p_kst 8.838000e-01   p_cons 7.470000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDX58.9_2850_10000_0.8838_0.747_1.png
                gene_name: DDX58
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
DCX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.049311e-02	ci left: 4.738613e-01	ci right 4.935482e-01	k: 4837	n:10000
Cons ci ratio: 7.757470e-02	ci left: 1.954493e-01	ci right 2.113238e-01	k: 2033	n:10000
KS ci ratio: 1.196764e-02	ci left: 9.091566e-01	ci right 9.202004e-01	k: 9148	n:10000
DCX   10000 perm   2 sec   (5299 perm/sec)   p_kst 9.148000e-01   p_cons 2.033000e-01   p_joint 4.837000e-01

Outputting figure to mutsig2_images.part000000000048/DCX.8_1369_10000_0.9148_0.2033_0.4837.png
                gene_name: DCX
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 12 percent done.
DDX46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.095686e-02	ci left: 9.223452e-01	ci right 9.326041e-01	k: 9276	n:10000
KS ci ratio: 1.659824e-02	ci left: 8.408121e-01	ci right 8.549846e-01	k: 8480	n:10000
DDX46   10000 perm   2 sec   (4973 perm/sec)   p_kst 8.480000e-01   p_cons 9.276000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDX46.7_3188_10000_0.848_0.9276_1.png
                gene_name: DDX46
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
DDR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.213733e-01	ci left: 2.702777e-02	ci right 3.384941e-02	k: 303	n:10000
Cons ci ratio: 1.109326e-01	ci left: 1.048095e-01	ci right 1.172181e-01	k: 1109	n:10000
KS ci ratio: 1.637446e-01	ci left: 4.974666e-02	ci right 5.871525e-02	k: 541	n:10000
DDR2   10000 perm   2 sec   (5699 perm/sec)   p_kst 5.410000e-02   p_cons 1.109000e-01   p_joint 3.030000e-02

Joint ci ratio: 1.322148e-01	ci left: 3.931020e-02	ci right 4.492391e-02	k: 841	n:20000
Cons ci ratio: 7.771605e-02	ci left: 1.084472e-01	ci right 1.172657e-01	k: 2256	n:20000
KS ci ratio: 1.168744e-01	ci left: 5.012972e-02	ci right 5.640096e-02	k: 1064	n:20000
DDR2   20000 perm   4 sec   (5101 perm/sec)   p_kst 5.320000e-02   p_cons 1.128000e-01   p_joint 4.205000e-02

Joint ci ratio: 1.202071e-01	ci left: 3.217197e-02	ci right 3.631887e-02	k: 1026	n:30000
Cons ci ratio: 6.373680e-02	ci left: 1.083867e-01	ci right 1.155554e-01	k: 3358	n:30000
KS ci ratio: 9.516112e-02	ci left: 5.098028e-02	ci right 5.610662e-02	k: 1605	n:30000
DDR2   30000 perm   6 sec   (4893 perm/sec)   p_kst 5.350000e-02   p_cons 1.119333e-01   p_joint 3.420000e-02

Joint ci ratio: 9.187949e-02	ci left: 4.152174e-02	ci right 4.554487e-02	k: 1740	n:40000
Cons ci ratio: 5.523027e-02	ci left: 1.087523e-01	ci right 1.149541e-01	k: 4473	n:40000
KS ci ratio: 8.362259e-02	ci left: 4.989327e-02	ci right 5.427205e-02	k: 2082	n:40000
DDR2   40000 perm   8 sec   (4739 perm/sec)   p_kst 5.205000e-02   p_cons 1.118250e-01   p_joint 4.350000e-02

Outputting figure to mutsig2_images.part000000000048/DDR2.6_2632_40000_0.05205_0.11182_0.0435.png
                gene_name: DDR2
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 15 percent done.
DDX17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.674599e-02	ci left: 8.384694e-01	ci right 8.527287e-01	k: 8457	n:10000
KS ci ratio: 1.971700e-02	ci left: 7.900960e-01	ci right 8.059300e-01	k: 7981	n:10000
DDX17   10000 perm   2 sec   (5037 perm/sec)   p_kst 7.981000e-01   p_cons 8.457000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDX17.6_2248_10000_0.7981_0.8457_1.png
                gene_name: DDX17
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
DDX27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.218371e-01	ci left: 8.805737e-02	ci right 9.958050e-02	k: 937	n:10000
Cons ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
KS ci ratio: 1.186529e-01	ci left: 9.253239e-02	ci right 1.043027e-01	k: 983	n:10000
DDX27   10000 perm   2 sec   (5346 perm/sec)   p_kst 9.830000e-02   p_cons 6.310000e-02   p_joint 9.370000e-02

Joint ci ratio: 1.090359e-01	ci left: 5.738108e-02	ci right 6.404735e-02	k: 1213	n:20000
Cons ci ratio: 9.928795e-02	ci left: 6.869925e-02	ci right 7.592569e-02	k: 1445	n:20000
KS ci ratio: 8.464332e-02	ci left: 9.273591e-02	ci right 1.009817e-01	k: 1936	n:20000
DDX27   20000 perm   4 sec   (4874 perm/sec)   p_kst 9.680000e-02   p_cons 7.225000e-02   p_joint 6.065000e-02

Joint ci ratio: 8.973847e-02	ci left: 5.711026e-02	ci right 6.250871e-02	k: 1793	n:30000
Cons ci ratio: 8.123043e-02	ci left: 6.909987e-02	ci right 7.498333e-02	k: 2160	n:30000
KS ci ratio: 7.111404e-02	ci left: 8.868678e-02	ci right 9.525915e-02	k: 2758	n:30000
DDX27   30000 perm   6 sec   (4669 perm/sec)   p_kst 9.193333e-02   p_cons 7.200000e-02   p_joint 5.976667e-02

Outputting figure to mutsig2_images.part000000000048/DDX27.6_2475_30000_0.091933_0.072_0.059767.png
                gene_name: DDX27
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.063 

Current progress: 19 percent done.
DCP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.474909e-02	ci left: 4.243561e-01	ci right 4.438824e-01	k: 4341	n:10000
Cons ci ratio: 2.053964e-02	ci left: 7.764103e-01	ci right 7.926236e-01	k: 7846	n:10000
KS ci ratio: 6.886859e-02	ci left: 2.362004e-01	ci right 2.531486e-01	k: 2446	n:10000
DCP2   10000 perm   2 sec   (5748 perm/sec)   p_kst 2.446000e-01   p_cons 7.846000e-01   p_joint 4.341000e-01

Outputting figure to mutsig2_images.part000000000048/DCP2.5_1307_10000_0.2446_0.7846_0.4341.png
                gene_name: DCP2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 20 percent done.
DDB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.189121e-02	ci left: 2.773546e-01	ci right 2.951701e-01	k: 2862	n:10000
Cons ci ratio: 2.192571e-02	ci left: 7.532242e-01	ci right 7.700231e-01	k: 7617	n:10000
KS ci ratio: 7.076461e-02	ci left: 2.264216e-01	ci right 2.431331e-01	k: 2347	n:10000
DDB1   10000 perm   2 sec   (5351 perm/sec)   p_kst 2.347000e-01   p_cons 7.617000e-01   p_joint 2.862000e-01

Outputting figure to mutsig2_images.part000000000048/DDB1.5_3531_10000_0.2347_0.7617_0.2862.png
                gene_name: DDB1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 22 percent done.
DDX24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.646732e-02	ci left: 5.261663e-01	ci right 5.458127e-01	k: 5360	n:10000
Cons ci ratio: 2.194986e-02	ci left: 7.528195e-01	ci right 7.696281e-01	k: 7613	n:10000
KS ci ratio: 6.413009e-02	ci left: 2.631968e-01	ci right 2.807362e-01	k: 2719	n:10000
DDX24   10000 perm   2 sec   (5321 perm/sec)   p_kst 2.719000e-01   p_cons 7.613000e-01   p_joint 5.360000e-01

Outputting figure to mutsig2_images.part000000000048/DDX24.5_2612_10000_0.2719_0.7613_0.536.png
                gene_name: DDX24
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 24 percent done.
DDX42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.092251e-02	ci left: 2.256317e-01	ci right 2.423235e-01	k: 2339	n:10000
Cons ci ratio: 3.909237e-02	ci left: 4.914510e-01	ci right 5.111482e-01	k: 5013	n:10000
KS ci ratio: 8.440949e-02	ci left: 1.698592e-01	ci right 1.849292e-01	k: 1773	n:10000
DDX42   10000 perm   2 sec   (5370 perm/sec)   p_kst 1.773000e-01   p_cons 5.013000e-01   p_joint 2.339000e-01

Outputting figure to mutsig2_images.part000000000048/DDX42.5_2885_10000_0.1773_0.5013_0.2339.png
                gene_name: DDX42
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 25 percent done.
DDX54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.608005e-02	ci left: 2.516216e-01	ci right 2.689183e-01	k: 2602	n:10000
Cons ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
KS ci ratio: 3.602251e-02	ci left: 5.322739e-01	ci right 5.519016e-01	k: 5421	n:10000
DDX54   10000 perm   2 sec   (5368 perm/sec)   p_kst 5.421000e-01   p_cons 1.072000e-01   p_joint 2.602000e-01

Joint ci ratio: 3.213622e-02	ci left: 4.196818e-01	ci right 4.334396e-01	k: 8531	n:20000
Cons ci ratio: 7.578032e-02	ci left: 1.135105e-01	ci right 1.225008e-01	k: 2359	n:20000
KS ci ratio: 2.580618e-02	ci left: 5.287084e-01	ci right 5.425813e-01	k: 10713	n:20000
DDX54   20000 perm   4 sec   (4867 perm/sec)   p_kst 5.356500e-01   p_cons 1.179500e-01   p_joint 4.265500e-01

Outputting figure to mutsig2_images.part000000000048/DDX54.5_2729_20000_0.53565_0.11795_0.42655.png
                gene_name: DDX54
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 27 percent done.
DDX56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.088419e-02	ci left: 4.690663e-01	ci right 4.887460e-01	k: 4789	n:10000
Cons ci ratio: 1.084238e-02	ci left: 9.237903e-01	ci right 9.339582e-01	k: 9290	n:10000
KS ci ratio: 5.059670e-02	ci left: 3.654989e-01	ci right 3.845739e-01	k: 3750	n:10000
DDX56   10000 perm   2 sec   (6059 perm/sec)   p_kst 3.750000e-01   p_cons 9.290000e-01   p_joint 4.789000e-01

Outputting figure to mutsig2_images.part000000000048/DDX56.5_1700_10000_0.375_0.929_0.4789.png
                gene_name: DDX56
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 29 percent done.
DDX60L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.670253e-02	ci left: 5.229629e-01	ci right 5.426180e-01	k: 5328	n:10000
Cons ci ratio: 5.487243e-02	ci left: 3.285285e-01	ci right 3.471661e-01	k: 3378	n:10000
KS ci ratio: 5.680355e-02	ci left: 3.133413e-01	ci right 3.317622e-01	k: 3225	n:10000
DDX60L   10000 perm   2 sec   (4576 perm/sec)   p_kst 3.225000e-01   p_cons 3.378000e-01   p_joint 5.328000e-01

Outputting figure to mutsig2_images.part000000000048/DDX60L.5_5269_10000_0.3225_0.3378_0.5328.png
                gene_name: DDX60L
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 31 percent done.
DCLRE1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.993788e-02	ci left: 4.807559e-01	ci right 5.004496e-01	k: 4906	n:10000
KS ci ratio: 2.354916e-02	ci left: 7.260304e-01	ci right 7.434327e-01	k: 7348	n:10000
DCLRE1C   10000 perm   2 sec   (5544 perm/sec)   p_kst 7.348000e-01   p_cons 4.906000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DCLRE1C.4_2135_10000_0.7348_0.4906_1.png
                gene_name: DCLRE1C
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
DCN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.441419e-02	ci left: 7.115912e-01	ci right 7.292802e-01	k: 7205	n:10000
Cons ci ratio: 5.462809e-02	ci left: 3.305146e-01	ci right 3.491788e-01	k: 3398	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
DCN   10000 perm   2 sec   (5914 perm/sec)   p_kst 1   p_cons 3.398000e-01   p_joint 7.205000e-01

Outputting figure to mutsig2_images.part000000000048/DCN.4_1108_10000_1_0.3398_0.7205.png
                gene_name: DCN
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 34 percent done.
DCTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.915544e-02	ci left: 6.343234e-01	ci right 6.531928e-01	k: 6438	n:10000
Cons ci ratio: 1.899873e-02	ci left: 8.019682e-01	ci right 8.174510e-01	k: 8098	n:10000
KS ci ratio: 5.907576e-02	ci left: 2.965789e-01	ci right 3.147345e-01	k: 3056	n:10000
DCTN1   10000 perm   2 sec   (4976 perm/sec)   p_kst 3.056000e-01   p_cons 8.098000e-01   p_joint 6.438000e-01

Outputting figure to mutsig2_images.part000000000048/DCTN1.4_3977_10000_0.3056_0.8098_0.6438.png
                gene_name: DCTN1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 36 percent done.
DCTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.154516e-02	ci left: 4.610765e-01	ci right 4.807405e-01	k: 4709	n:10000
Cons ci ratio: 1.811177e-02	ci left: 8.164937e-01	ci right 8.315171e-01	k: 8241	n:10000
KS ci ratio: 4.575590e-02	ci left: 4.134900e-01	ci right 4.329547e-01	k: 4232	n:10000
DCTN2   10000 perm   2 sec   (5791 perm/sec)   p_kst 4.232000e-01   p_cons 8.241000e-01   p_joint 4.709000e-01

Outputting figure to mutsig2_images.part000000000048/DCTN2.4_1263_10000_0.4232_0.8241_0.4709.png
                gene_name: DCTN2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 37 percent done.
DDR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.468708e-02	ci left: 7.070498e-01	ci right 7.248243e-01	k: 7160	n:10000
KS ci ratio: 1.185996e-02	ci left: 9.105972e-01	ci right 9.215590e-01	k: 9162	n:10000
DDR1   10000 perm   2 sec   (5567 perm/sec)   p_kst 9.162000e-01   p_cons 7.160000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDR1.4_2828_10000_0.9162_0.716_1.png
                gene_name: DDR1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
DDX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.730395e-02	ci left: 6.640082e-01	ci right 6.824908e-01	k: 6733	n:10000
Cons ci ratio: 1.429301e-02	ci left: 8.762316e-01	ci right 8.889446e-01	k: 8827	n:10000
KS ci ratio: 4.674428e-02	ci left: 4.031269e-01	ci right 4.225239e-01	k: 4128	n:10000
DDX1   10000 perm   2 sec   (5086 perm/sec)   p_kst 4.128000e-01   p_cons 8.827000e-01   p_joint 6.733000e-01

Outputting figure to mutsig2_images.part000000000048/DDX1.4_2327_10000_0.4128_0.8827_0.6733.png
                gene_name: DDX1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 41 percent done.
DDX11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.281323e-02	ci left: 2.164518e-01	ci right 2.329089e-01	k: 2246	n:10000
Cons ci ratio: 1.629514e-01	ci left: 5.022725e-02	ci right 5.923435e-02	k: 546	n:10000
KS ci ratio: 6.488330e-02	ci left: 2.586449e-01	ci right 2.760908e-01	k: 2673	n:10000
DDX11   10000 perm   2 sec   (4851 perm/sec)   p_kst 2.673000e-01   p_cons 5.460000e-02   p_joint 2.246000e-01

Joint ci ratio: 7.044928e-02	ci left: 1.293073e-01	ci right 1.387993e-01	k: 2680	n:20000
Cons ci ratio: 1.156747e-01	ci left: 5.115076e-02	ci right 5.747960e-02	k: 1085	n:20000
KS ci ratio: 4.581542e-02	ci left: 2.617714e-01	ci right 2.740961e-01	k: 5358	n:20000
DDX11   20000 perm   5 sec   (4372 perm/sec)   p_kst 2.679000e-01   p_cons 5.425000e-02   p_joint 1.340000e-01

Joint ci ratio: 5.779189e-02	ci left: 1.291106e-01	ci right 1.368273e-01	k: 3988	n:30000
Cons ci ratio: 9.896261e-02	ci left: 4.723528e-02	ci right 5.218573e-02	k: 1490	n:30000
KS ci ratio: 3.724521e-02	ci left: 2.646175e-01	ci right 2.746938e-01	k: 8089	n:30000
DDX11   30000 perm   7 sec   (4264 perm/sec)   p_kst 2.696333e-01   p_cons 4.966667e-02   p_joint 1.329333e-01

Outputting figure to mutsig2_images.part000000000048/DDX11.4_3022_30000_0.26963_0.049667_0.13293.png
                gene_name: DDX11
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 42 percent done.
DDX20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.002953e-02	ci left: 3.707712e-01	ci right 3.898986e-01	k: 3803	n:10000
Cons ci ratio: 3.668042e-02	ci left: 5.232632e-01	ci right 5.429175e-01	k: 5331	n:10000
KS ci ratio: 6.875699e-02	ci left: 2.367933e-01	ci right 2.537553e-01	k: 2452	n:10000
DDX20   10000 perm   2 sec   (5072 perm/sec)   p_kst 2.452000e-01   p_cons 5.331000e-01   p_joint 3.803000e-01

Outputting figure to mutsig2_images.part000000000048/DDX20.4_2519_10000_0.2452_0.5331_0.3803.png
                gene_name: DDX20
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 44 percent done.
DDX21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.799927e-02	ci left: 8.183233e-01	ci right 8.332864e-01	k: 8259	n:10000
KS ci ratio: 1.155646e-02	ci left: 9.146125e-01	ci right 9.253413e-01	k: 9201	n:10000
DDX21   10000 perm   2 sec   (5555 perm/sec)   p_kst 9.201000e-01   p_cons 8.259000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDX21.4_2412_10000_0.9201_0.8259_1.png
                gene_name: DDX21
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
DDX23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.601716e-03	ci left: 9.840410e-01	ci right 9.886693e-01	k: 9865	n:10000
KS ci ratio: 1.248945e-02	ci left: 9.020630e-01	ci right 9.134982e-01	k: 9079	n:10000
DDX23   10000 perm   2 sec   (5321 perm/sec)   p_kst 9.079000e-01   p_cons 9.865000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDX23.4_2527_10000_0.9079_0.9865_1.png
                gene_name: DDX23
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
DDX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.012743e-02	ci left: 9.325769e-01	ci right 9.421664e-01	k: 9375	n:10000
KS ci ratio: 1.298328e-02	ci left: 8.951842e-01	ci right 9.069810e-01	k: 9012	n:10000
DDX6   10000 perm   2 sec   (5925 perm/sec)   p_kst 9.012000e-01   p_cons 9.375000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDX6.4_1500_10000_0.9012_0.9375_1.png
                gene_name: DDX6
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
DCPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.126047e-02	ci left: 2.239532e-01	ci right 2.406030e-01	k: 2322	n:10000
Cons ci ratio: 3.672464e-02	ci left: 5.226626e-01	ci right 5.423184e-01	k: 5325	n:10000
KS ci ratio: 9.349504e-02	ci left: 1.424659e-01	ci right 1.565389e-01	k: 1494	n:10000
DCPS   10000 perm   1 sec   (7016 perm/sec)   p_kst 1.494000e-01   p_cons 5.325000e-01   p_joint 2.322000e-01

Outputting figure to mutsig2_images.part000000000048/DCPS.3_1038_10000_0.1494_0.5325_0.2322.png
                gene_name: DCPS
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 51 percent done.
DCTD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.589536e-01	ci left: 1.949575e-02	ci right 2.538701e-02	k: 223	n:10000
Cons ci ratio: 7.136050e-02	ci left: 2.234596e-01	ci right 2.400969e-01	k: 2317	n:10000
KS ci ratio: 3.209154e-01	ci left: 1.234131e-02	ci right 1.714746e-02	k: 146	n:10000
DCTD   10000 perm   1 sec   (6788 perm/sec)   p_kst 1.460000e-02   p_cons 2.317000e-01   p_joint 2.230000e-02

Joint ci ratio: 1.761951e-01	ci left: 2.201898e-02	ci right 2.632088e-02	k: 482	n:20000
Cons ci ratio: 4.948793e-02	ci left: 2.328549e-01	ci right 2.447211e-01	k: 4775	n:20000
KS ci ratio: 2.238557e-01	ci left: 1.340842e-02	ci right 1.683467e-02	k: 301	n:20000
DCTD   20000 perm   3 sec   (6016 perm/sec)   p_kst 1.505000e-02   p_cons 2.387500e-01   p_joint 2.410000e-02

Joint ci ratio: 1.782389e-01	ci left: 1.445114e-02	ci right 1.731040e-02	k: 475	n:30000
Cons ci ratio: 4.031813e-02	ci left: 2.347456e-01	ci right 2.444382e-01	k: 7187	n:30000
KS ci ratio: 1.857145e-01	ci left: 1.327321e-02	ci right 1.602196e-02	k: 438	n:30000
DCTD   30000 perm   5 sec   (5675 perm/sec)   p_kst 1.460000e-02   p_cons 2.395667e-01   p_joint 1.583333e-02

Joint ci ratio: 1.422723e-01	ci left: 1.729850e-02	ci right 1.997203e-02	k: 744	n:40000
Cons ci ratio: 3.488308e-02	ci left: 2.357466e-01	ci right 2.441412e-01	k: 9597	n:40000
KS ci ratio: 1.624375e-01	ci left: 1.318338e-02	ci right 1.553790e-02	k: 573	n:40000
DCTD   40000 perm   7 sec   (5456 perm/sec)   p_kst 1.432500e-02   p_cons 2.399250e-01   p_joint 1.860000e-02

Joint ci ratio: 1.437219e-01	ci left: 1.360549e-02	ci right 1.573141e-02	k: 732	n:50000
Cons ci ratio: 3.106330e-02	ci left: 2.377934e-01	ci right 2.453166e-01	k: 12077	n:50000
KS ci ratio: 1.460653e-01	ci left: 1.316194e-02	ci right 1.525502e-02	k: 709	n:50000
DCTD   50000 perm   9 sec   (5280 perm/sec)   p_kst 1.418000e-02   p_cons 2.415400e-01   p_joint 1.464000e-02

Joint ci ratio: 1.356176e-01	ci left: 1.280124e-02	ci right 1.467957e-02	k: 823	n:60000
Cons ci ratio: 2.919066e-02	ci left: 2.277152e-01	ci right 2.344775e-01	k: 13865	n:60000
KS ci ratio: 1.353680e-01	ci left: 1.284956e-02	ci right 1.473123e-02	k: 826	n:60000
DCTD   60000 perm   12 sec   (5150 perm/sec)   p_kst 1.376667e-02   p_cons 2.310833e-01   p_joint 1.371667e-02

Joint ci ratio: 1.180247e-01	ci left: 1.459787e-02	ci right 1.644261e-02	k: 1085	n:70000
Cons ci ratio: 2.706448e-02	ci left: 2.274553e-01	ci right 2.337099e-01	k: 16140	n:70000
KS ci ratio: 1.257789e-01	ci left: 1.282426e-02	ci right 1.455926e-02	k: 957	n:70000
DCTD   70000 perm   14 sec   (5048 perm/sec)   p_kst 1.367143e-02   p_cons 2.305714e-01   p_joint 1.550000e-02

Joint ci ratio: 1.186962e-01	ci left: 1.265108e-02	ci right 1.425949e-02	k: 1075	n:80000
Cons ci ratio: 2.536554e-02	ci left: 2.269754e-01	ci right 2.328192e-01	k: 18391	n:80000
KS ci ratio: 1.178662e-01	ci left: 1.283310e-02	ci right 1.445246e-02	k: 1090	n:80000
DCTD   80000 perm   16 sec   (4946 perm/sec)   p_kst 1.362500e-02   p_cons 2.298875e-01   p_joint 1.343750e-02

Joint ci ratio: 1.123557e-01	ci left: 1.259415e-02	ci right 1.410412e-02	k: 1200	n:90000
Cons ci ratio: 2.388189e-02	ci left: 2.276300e-01	ci right 2.331430e-01	k: 20734	n:90000
KS ci ratio: 1.116511e-01	ci left: 1.275621e-02	ci right 1.427539e-02	k: 1215	n:90000
DCTD   90000 perm   19 sec   (4846 perm/sec)   p_kst 1.350000e-02   p_cons 2.303778e-01   p_joint 1.333333e-02

Joint ci ratio: 9.660061e-02	ci left: 1.541684e-02	ci right 1.699140e-02	k: 1619	n:100000
Cons ci ratio: 2.265501e-02	ci left: 2.277930e-01	ci right 2.330227e-01	k: 23040	n:100000
KS ci ratio: 1.061652e-01	ci left: 1.273545e-02	ci right 1.417298e-02	k: 1344	n:100000
DCTD   100000 perm   21 sec   (4755 perm/sec)   p_kst 1.344000e-02   p_cons 2.304000e-01   p_joint 1.619000e-02

Joint ci ratio: 8.775100e-02	ci left: 1.703570e-02	ci right 1.860805e-02	k: 1959	n:110000
Cons ci ratio: 2.155711e-02	ci left: 2.286296e-01	ci right 2.336209e-01	k: 25423	n:110000
KS ci ratio: 1.006572e-01	ci left: 1.291498e-02	ci right 1.429266e-02	k: 1495	n:110000
DCTD   110000 perm   24 sec   (4664 perm/sec)   p_kst 1.359091e-02   p_cons 2.311182e-01   p_joint 1.780909e-02

Joint ci ratio: 8.315190e-02	ci left: 1.742669e-02	ci right 1.894673e-02	k: 2181	n:120000
Cons ci ratio: 2.062934e-02	ci left: 2.289083e-01	ci right 2.336880e-01	k: 27755	n:120000
KS ci ratio: 9.534081e-02	ci left: 1.322892e-02	ci right 1.456139e-02	k: 1666	n:120000
DCTD   120000 perm   26 sec   (4579 perm/sec)   p_kst 1.388333e-02   p_cons 2.312917e-01   p_joint 1.817500e-02

Outputting figure to mutsig2_images.part000000000048/DCTD.3_594_120000_0.013883_0.23129_0.018175.png
                gene_name: DCTD
               theta_stop: 0.095 
                    nperm: 120000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 53 percent done.
DCTPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.223301e-02	ci left: 2.192151e-01	ci right 2.357440e-01	k: 2274	n:10000
Cons ci ratio: 7.957877e-03	ci left: 9.564959e-01	ci right 9.642330e-01	k: 9605	n:10000
KS ci ratio: 9.711277e-02	ci left: 1.332547e-01	ci right 1.469557e-01	k: 1400	n:10000
DCTPP1   10000 perm   2 sec   (6633 perm/sec)   p_kst 1.400000e-01   p_cons 9.605000e-01   p_joint 2.274000e-01

Outputting figure to mutsig2_images.part000000000048/DCTPP1.3_525_10000_0.14_0.9605_0.2274.png
                gene_name: DCTPP1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 54 percent done.
DDHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.774740e-02	ci left: 5.089528e-01	ci right 5.286362e-01	k: 5188	n:10000
Cons ci ratio: 1.852876e-02	ci left: 8.096859e-01	ci right 8.249288e-01	k: 8174	n:10000
KS ci ratio: 6.514930e-02	ci left: 2.570620e-01	ci right 2.744747e-01	k: 2657	n:10000
DDHD1   10000 perm   2 sec   (4317 perm/sec)   p_kst 2.657000e-01   p_cons 8.174000e-01   p_joint 5.188000e-01

Outputting figure to mutsig2_images.part000000000048/DDHD1.3_2780_10000_0.2657_0.8174_0.5188.png
                gene_name: DDHD1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 56 percent done.
DDHD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.760851e-02	ci left: 6.590747e-01	ci right 6.776271e-01	k: 6684	n:10000
KS ci ratio: 1.399478e-02	ci left: 8.806319e-01	ci right 8.931418e-01	k: 8870	n:10000
DDHD2   10000 perm   2 sec   (5937 perm/sec)   p_kst 8.870000e-01   p_cons 6.684000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDHD2.3_2262_10000_0.887_0.6684_1.png
                gene_name: DDHD2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
DDX10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.909731e-02	ci left: 8.003440e-01	ci right 8.158761e-01	k: 8082	n:10000
KS ci ratio: 2.996751e-02	ci left: 6.215560e-01	ci right 6.405676e-01	k: 6311	n:10000
DDX10   10000 perm   2 sec   (5385 perm/sec)   p_kst 6.311000e-01   p_cons 8.082000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDX10.3_2700_10000_0.6311_0.8082_1.png
                gene_name: DDX10
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
DDX18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.849617e-02	ci left: 1.917059e-01	ci right 2.074695e-01	k: 1995	n:10000
Cons ci ratio: 1.374621e-01	ci left: 7.000876e-02	ci right 8.044030e-02	k: 751	n:10000
KS ci ratio: 6.570466e-02	ci left: 2.537975e-01	ci right 2.711410e-01	k: 2624	n:10000
DDX18   10000 perm   2 sec   (5786 perm/sec)   p_kst 2.624000e-01   p_cons 7.510000e-02   p_joint 1.995000e-01

Joint ci ratio: 5.543648e-02	ci left: 1.944258e-01	ci right 2.055615e-01	k: 3999	n:20000
Cons ci ratio: 9.219200e-02	ci left: 7.906552e-02	ci right 8.675625e-02	k: 1657	n:20000
KS ci ratio: 4.647255e-02	ci left: 2.562631e-01	ci right 2.685060e-01	k: 5247	n:20000
DDX18   20000 perm   4 sec   (5152 perm/sec)   p_kst 2.623500e-01   p_cons 8.285000e-02   p_joint 1.999500e-01

Outputting figure to mutsig2_images.part000000000048/DDX18.3_2069_20000_0.26235_0.08285_0.19995.png
                gene_name: DDX18
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 61 percent done.
DDX19A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.792162e-02	ci left: 5.066519e-01	ci right 5.263385e-01	k: 5165	n:10000
Cons ci ratio: 3.179695e-02	ci left: 5.934319e-01	ci right 6.127080e-01	k: 6031	n:10000
KS ci ratio: 6.098002e-02	ci left: 2.833972e-01	ci right 3.013239e-01	k: 2923	n:10000
DDX19A   10000 perm   2 sec   (6032 perm/sec)   p_kst 2.923000e-01   p_cons 6.031000e-01   p_joint 5.165000e-01

Outputting figure to mutsig2_images.part000000000048/DDX19A.3_1485_10000_0.2923_0.6031_0.5165.png
                gene_name: DDX19A
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 63 percent done.
DDX19B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.155130e-01	ci left: 1.280183e-02	ci right 1.768651e-02	k: 151	n:10000
Cons ci ratio: 1.976591e-02	ci left: 7.892847e-01	ci right 8.051418e-01	k: 7973	n:10000
KS ci ratio: 4.884054e-01	ci left: 4.844389e-03	ci right 8.053335e-03	k: 63	n:10000
DDX19B   10000 perm   2 sec   (6044 perm/sec)   p_kst 6.300000e-03   p_cons 7.973000e-01   p_joint 1.510000e-02

Joint ci ratio: 1.494591e-01	ci left: 3.076009e-02	ci right 3.577680e-02	k: 664	n:20000
Cons ci ratio: 1.451714e-02	ci left: 7.789878e-01	ci right 7.904293e-01	k: 15695	n:20000
KS ci ratio: 3.660847e-01	ci left: 4.658600e-03	ci right 6.788973e-03	k: 113	n:20000
DDX19B   20000 perm   4 sec   (5407 perm/sec)   p_kst 5.650000e-03   p_cons 7.847500e-01   p_joint 3.320000e-02

Joint ci ratio: 2.319143e-01	ci left: 8.339104e-03	ci right 1.055746e-02	k: 282	n:30000
Cons ci ratio: 1.183035e-02	ci left: 7.807101e-01	ci right 7.900345e-01	k: 23562	n:30000
KS ci ratio: 3.100462e-01	ci left: 4.479162e-03	ci right 6.152174e-03	k: 158	n:30000
DDX19B   30000 perm   6 sec   (5183 perm/sec)   p_kst 5.266667e-03   p_cons 7.854000e-01   p_joint 9.400000e-03

Joint ci ratio: 1.650836e-01	ci left: 1.275159e-02	ci right 1.506977e-02	k: 555	n:40000
Cons ci ratio: 9.793967e-03	ci left: 7.962473e-01	ci right 8.041091e-01	k: 32008	n:40000
KS ci ratio: 2.560555e-01	ci left: 5.079395e-03	ci right 6.593699e-03	k: 232	n:40000
DDX19B   40000 perm   8 sec   (4879 perm/sec)   p_kst 5.800000e-03   p_cons 8.002000e-01   p_joint 1.387500e-02

Joint ci ratio: 1.506513e-01	ci left: 1.235273e-02	ci right 1.438435e-02	k: 667	n:50000
Cons ci ratio: 8.774764e-03	ci left: 7.961243e-01	ci right 8.031609e-01	k: 39983	n:50000
KS ci ratio: 2.263996e-01	ci left: 5.285274e-03	ci right 6.653040e-03	k: 297	n:50000
DDX19B   50000 perm   11 sec   (4753 perm/sec)   p_kst 5.940000e-03   p_cons 7.996600e-01   p_joint 1.334000e-02

Joint ci ratio: 1.470816e-01	ci left: 1.083887e-02	ci right 1.257551e-02	k: 701	n:60000
Cons ci ratio: 8.023380e-03	ci left: 7.959048e-01	ci right 8.023329e-01	k: 47948	n:60000
KS ci ratio: 2.026098e-01	ci left: 5.571736e-03	ci right 6.843405e-03	k: 371	n:60000
DDX19B   60000 perm   13 sec   (4658 perm/sec)   p_kst 6.183333e-03   p_cons 7.991333e-01   p_joint 1.168333e-02

Joint ci ratio: 1.122810e-01	ci left: 1.615251e-02	ci right 1.808781e-02	k: 1197	n:70000
Cons ci ratio: 7.448798e-03	ci left: 7.952505e-01	ci right 8.012105e-01	k: 55877	n:70000
KS ci ratio: 1.884563e-01	ci left: 5.563822e-03	ci right 6.734825e-03	k: 429	n:70000
DDX19B   70000 perm   15 sec   (4572 perm/sec)   p_kst 6.128571e-03   p_cons 7.982429e-01   p_joint 1.710000e-02

Joint ci ratio: 1.045696e-01	ci left: 1.635905e-02	ci right 1.817620e-02	k: 1380	n:80000
Cons ci ratio: 6.951597e-03	ci left: 7.961934e-01	ci right 8.017599e-01	k: 63919	n:80000
KS ci ratio: 1.745824e-01	ci left: 5.715605e-03	ci right 6.820660e-03	k: 500	n:80000
DDX19B   80000 perm   18 sec   (4496 perm/sec)   p_kst 6.250000e-03   p_cons 7.989875e-01   p_joint 1.725000e-02

Joint ci ratio: 1.166117e-01	ci left: 1.167642e-02	ci right 1.313304e-02	k: 1115	n:90000
Cons ci ratio: 6.554223e-03	ci left: 7.963443e-01	ci right 8.015919e-01	k: 71908	n:90000
KS ci ratio: 1.648372e-01	ci left: 5.729547e-03	ci right 6.769329e-03	k: 561	n:90000
DDX19B   90000 perm   20 sec   (4421 perm/sec)   p_kst 6.233333e-03   p_cons 7.989778e-01   p_joint 1.238889e-02

Joint ci ratio: 1.212737e-01	ci left: 9.712558e-03	ci right 1.097609e-02	k: 1033	n:100000
Cons ci ratio: 6.225965e-03	ci left: 7.960605e-01	ci right 8.010422e-01	k: 79856	n:100000
KS ci ratio: 1.555588e-01	ci left: 5.818968e-03	ci right 6.809994e-03	k: 630	n:100000
DDX19B   100000 perm   23 sec   (4348 perm/sec)   p_kst 6.300000e-03   p_cons 7.985600e-01   p_joint 1.033000e-02

Joint ci ratio: 9.716106e-02	ci left: 1.387284e-02	ci right 1.529838e-02	k: 1603	n:110000
Cons ci ratio: 6.259071e-03	ci left: 7.785258e-01	ci right 7.834230e-01	k: 85908	n:110000
KS ci ratio: 1.484380e-01	ci left: 5.832181e-03	ci right 6.775952e-03	k: 692	n:110000
DDX19B   110000 perm   26 sec   (4268 perm/sec)   p_kst 6.290909e-03   p_cons 7.809818e-01   p_joint 1.457273e-02

Joint ci ratio: 8.261364e-02	ci left: 1.765527e-02	ci right 1.918480e-02	k: 2209	n:120000
Cons ci ratio: 5.983672e-03	ci left: 7.791427e-01	ci right 7.838271e-01	k: 93779	n:120000
KS ci ratio: 1.412748e-01	ci left: 5.924448e-03	ci right 6.832988e-03	k: 764	n:120000
DDX19B   120000 perm   29 sec   (4197 perm/sec)   p_kst 6.366667e-03   p_cons 7.814917e-01   p_joint 1.840833e-02

Joint ci ratio: 7.934170e-02	ci left: 1.769898e-02	ci right 1.916876e-02	k: 2395	n:130000
Cons ci ratio: 5.748656e-03	ci left: 7.792513e-01	ci right 7.837515e-01	k: 101596	n:130000
KS ci ratio: 1.348147e-01	ci left: 6.025747e-03	ci right 6.904178e-03	k: 839	n:130000
DDX19B   130000 perm   31 sec   (4131 perm/sec)   p_kst 6.453846e-03   p_cons 7.815077e-01   p_joint 1.842308e-02

Joint ci ratio: 7.809510e-02	ci left: 1.698770e-02	ci right 1.837523e-02	k: 2474	n:140000
Cons ci ratio: 5.539205e-03	ci left: 7.793547e-01	ci right 7.836908e-01	k: 109414	n:140000
KS ci ratio: 1.293089e-01	ci left: 6.099557e-03	ci right 6.949647e-03	k: 912	n:140000
DDX19B   140000 perm   34 sec   (4065 perm/sec)   p_kst 6.514286e-03   p_cons 7.815286e-01   p_joint 1.767143e-02

Joint ci ratio: 7.385791e-02	ci left: 1.775206e-02	ci right 1.911998e-02	k: 2764	n:150000
Cons ci ratio: 5.354335e-03	ci left: 7.792395e-01	ci right 7.834296e-01	k: 117201	n:150000
KS ci ratio: 1.254556e-01	ci left: 6.060804e-03	ci right 6.878449e-03	k: 969	n:150000
DDX19B   150000 perm   38 sec   (3998 perm/sec)   p_kst 6.460000e-03   p_cons 7.813400e-01   p_joint 1.842667e-02

Joint ci ratio: 7.127092e-02	ci left: 1.789447e-02	ci right 1.922306e-02	k: 2968	n:160000
Cons ci ratio: 5.179988e-03	ci left: 7.795924e-01	ci right 7.836474e-01	k: 125060	n:160000
KS ci ratio: 1.210409e-01	ci left: 6.118143e-03	ci right 6.912398e-03	k: 1041	n:160000
DDX19B   160000 perm   41 sec   (3937 perm/sec)   p_kst 6.506250e-03   p_cons 7.816250e-01   p_joint 1.855000e-02

Joint ci ratio: 7.068316e-02	ci left: 1.714207e-02	ci right 1.840386e-02	k: 3020	n:170000
Cons ci ratio: 5.026387e-03	ci left: 7.795811e-01	ci right 7.835152e-01	k: 132864	n:170000
KS ci ratio: 1.164841e-01	ci left: 6.232007e-03	ci right 7.008492e-03	k: 1124	n:170000
DDX19B   170000 perm   44 sec   (3879 perm/sec)   p_kst 6.611765e-03   p_cons 7.815529e-01   p_joint 1.776471e-02

Joint ci ratio: 6.700225e-02	ci left: 1.803547e-02	ci right 1.929121e-02	k: 3358	n:180000
Cons ci ratio: 4.885050e-03	ci left: 7.796172e-01	ci right 7.834404e-01	k: 140676	n:180000
KS ci ratio: 1.130198e-01	ci left: 6.263518e-03	ci right 7.019170e-03	k: 1194	n:180000
DDX19B   180000 perm   47 sec   (3822 perm/sec)   p_kst 6.633333e-03   p_cons 7.815333e-01   p_joint 1.865556e-02

Joint ci ratio: 6.643429e-02	ci left: 1.739657e-02	ci right 1.859715e-02	k: 3418	n:190000
Cons ci ratio: 4.753244e-03	ci left: 7.797776e-01	ci right 7.834981e-01	k: 148512	n:190000
KS ci ratio: 1.097599e-01	ci left: 6.302256e-03	ci right 7.039233e-03	k: 1266	n:190000
DDX19B   190000 perm   50 sec   (3768 perm/sec)   p_kst 6.663158e-03   p_cons 7.816421e-01   p_joint 1.798947e-02

Joint ci ratio: 6.449665e-02	ci left: 1.754976e-02	ci right 1.872427e-02	k: 3626	n:200000
Cons ci ratio: 4.632985e-03	ci left: 7.798178e-01	ci right 7.834440e-01	k: 156327	n:200000
KS ci ratio: 1.068069e-01	ci left: 6.332534e-03	ci right 7.051876e-03	k: 1337	n:200000
DDX19B   200000 perm   54 sec   (3713 perm/sec)   p_kst 6.685000e-03   p_cons 7.816350e-01   p_joint 1.813000e-02

Joint ci ratio: 5.609750e-02	ci left: 2.208596e-02	ci right 2.336535e-02	k: 4771	n:210000
Cons ci ratio: 4.518262e-03	ci left: 7.800941e-01	ci right 7.836315e-01	k: 164192	n:210000
KS ci ratio: 1.041173e-01	ci left: 6.355530e-03	ci right 7.058191e-03	k: 1407	n:210000
DDX19B   210000 perm   57 sec   (3661 perm/sec)   p_kst 6.700000e-03   p_cons 7.818667e-01   p_joint 2.271905e-02

Joint ci ratio: 6.153994e-02	ci left: 1.755149e-02	ci right 1.867035e-02	k: 3983	n:220000
Cons ci ratio: 4.415301e-03	ci left: 7.800636e-01	ci right 7.835199e-01	k: 171995	n:220000
KS ci ratio: 1.019690e-01	ci left: 6.332337e-03	ci right 7.017122e-03	k: 1467	n:220000
DDX19B   220000 perm   61 sec   (3612 perm/sec)   p_kst 6.668182e-03   p_cons 7.817955e-01   p_joint 1.810455e-02

Joint ci ratio: 5.899457e-02	ci left: 1.827883e-02	ci right 1.939421e-02	k: 4331	n:230000
Cons ci ratio: 4.318082e-03	ci left: 7.801151e-01	ci right 7.834952e-01	k: 179816	n:230000
KS ci ratio: 9.994844e-02	ci left: 6.311297e-03	ci right 6.979489e-03	k: 1527	n:230000
DDX19B   230000 perm   65 sec   (3565 perm/sec)   p_kst 6.639130e-03   p_cons 7.818087e-01   p_joint 1.883043e-02

Outputting figure to mutsig2_images.part000000000048/DDX19B.3_1488_230000_0.0066391_0.78181_0.01883.png
                gene_name: DDX19B
               theta_stop: 0.100 
                    nperm: 230000 
                     p_ks: 0.0066 
        ci_ks_bounds_left: 0.0063 
       ci_ks_bounds_right: 0.0070 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 64 percent done.
DDX31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.870133e-02	ci left: 2.370897e-01	ci right 2.540587e-01	k: 2455	n:10000
Cons ci ratio: 2.914273e-02	ci left: 6.345245e-01	ci right 6.533915e-01	k: 6440	n:10000
KS ci ratio: 1.448894e-01	ci left: 6.323884e-02	ci right 7.321448e-02	k: 681	n:10000
DDX31   10000 perm   2 sec   (5555 perm/sec)   p_kst 6.810000e-02   p_cons 6.440000e-01   p_joint 2.455000e-01

Joint ci ratio: 4.602656e-02	ci left: 2.599848e-01	ci right 2.722833e-01	k: 5322	n:20000
Cons ci ratio: 2.054729e-02	ci left: 6.386740e-01	ci right 6.519837e-01	k: 12907	n:20000
KS ci ratio: 1.019739e-01	ci left: 6.528115e-02	ci right 7.234484e-02	k: 1375	n:20000
DDX31   20000 perm   4 sec   (4982 perm/sec)   p_kst 6.875000e-02   p_cons 6.453500e-01   p_joint 2.661000e-01

Joint ci ratio: 4.416243e-02	ci left: 2.033859e-01	ci right 2.126041e-01	k: 6239	n:30000
Cons ci ratio: 1.672393e-02	ci left: 6.413607e-01	ci right 6.522108e-01	k: 19404	n:30000
KS ci ratio: 8.321865e-02	ci left: 6.599368e-02	ci right 7.175682e-02	k: 2065	n:30000
DDX31   30000 perm   6 sec   (4743 perm/sec)   p_kst 6.883333e-02   p_cons 6.468000e-01   p_joint 2.079667e-01

Outputting figure to mutsig2_images.part000000000048/DDX31.3_2643_30000_0.068833_0.6468_0.20797.png
                gene_name: DDX31
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 66 percent done.
DDX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.683977e-02	ci left: 6.715616e-01	ci right 6.899330e-01	k: 6808	n:10000
KS ci ratio: 5.641285e-03	ci left: 9.768488e-01	ci right 9.824669e-01	k: 9798	n:10000
DDX4   10000 perm   2 sec   (5644 perm/sec)   p_kst 9.798000e-01   p_cons 6.808000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDX4.3_2300_10000_0.9798_0.6808_1.png
                gene_name: DDX4
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
DDX47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.793680e-02	ci left: 5.064518e-01	ci right 5.261387e-01	k: 5163	n:10000
Cons ci ratio: 9.169206e-03	ci left: 9.436740e-01	ci right 9.524627e-01	k: 9482	n:10000
KS ci ratio: 4.751436e-02	ci left: 3.952579e-01	ci right 4.145975e-01	k: 4049	n:10000
DDX47   10000 perm   2 sec   (6093 perm/sec)   p_kst 4.049000e-01   p_cons 9.482000e-01   p_joint 5.163000e-01

Outputting figure to mutsig2_images.part000000000048/DDX47.3_1416_10000_0.4049_0.9482_0.5163.png
                gene_name: DDX47
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 69 percent done.
DDX49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.415671e-02	ci left: 3.343879e-01	ci right 3.531032e-01	k: 3437	n:10000
Cons ci ratio: 5.982159e-02	ci left: 2.913250e-01	ci right 3.093915e-01	k: 3003	n:10000
KS ci ratio: 8.093572e-02	ci left: 1.822537e-01	ci right 1.977273e-01	k: 1899	n:10000
DDX49   10000 perm   2 sec   (6169 perm/sec)   p_kst 1.899000e-01   p_cons 3.003000e-01   p_joint 3.437000e-01

Outputting figure to mutsig2_images.part000000000048/DDX49.3_1504_10000_0.1899_0.3003_0.3437.png
                gene_name: DDX49
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 71 percent done.
DDX50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.312167e-02	ci left: 5.736643e-01	ci right 5.930871e-01	k: 5834	n:10000
Cons ci ratio: 4.106480e-02	ci left: 4.668688e-01	ci right 4.865448e-01	k: 4767	n:10000
KS ci ratio: 4.684082e-02	ci left: 4.021307e-01	ci right 4.215207e-01	k: 4118	n:10000
DDX50   10000 perm   2 sec   (5673 perm/sec)   p_kst 4.118000e-01   p_cons 4.767000e-01   p_joint 5.834000e-01

Outputting figure to mutsig2_images.part000000000048/DDX50.3_2274_10000_0.4118_0.4767_0.5834.png
                gene_name: DDX50
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 73 percent done.
DDX55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.979688e-02	ci left: 3.729600e-01	ci right 3.921085e-01	k: 3825	n:10000
Cons ci ratio: 1.693796e-02	ci left: 8.354145e-01	ci right 8.497853e-01	k: 8427	n:10000
KS ci ratio: 7.926594e-02	ci left: 1.886528e-01	ci right 2.043244e-01	k: 1964	n:10000
DDX55   10000 perm   2 sec   (6013 perm/sec)   p_kst 1.964000e-01   p_cons 8.427000e-01   p_joint 3.825000e-01

Outputting figure to mutsig2_images.part000000000048/DDX55.3_1859_10000_0.1964_0.8427_0.3825.png
                gene_name: DDX55
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 75 percent done.
DECR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.441687e-02	ci left: 8.743904e-01	ci right 8.871869e-01	k: 8809	n:10000
Cons ci ratio: 4.668649e-02	ci left: 4.037247e-01	ci right 4.231258e-01	k: 4134	n:10000
KS ci ratio: 3.882749e-02	ci left: 4.948504e-01	ci right 5.145468e-01	k: 5047	n:10000
DECR1   10000 perm   2 sec   (6372 perm/sec)   p_kst 5.047000e-01   p_cons 4.134000e-01   p_joint 8.809000e-01

Outputting figure to mutsig2_images.part000000000048/DECR1.3_1048_10000_0.5047_0.4134_0.8809.png
                gene_name: DECR1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 76 percent done.
DCLRE1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.969557e-01	ci left: 3.433772e-02	ci right 4.193438e-02	k: 380	n:10000
Cons ci ratio: 8.200305e-02	ci left: 1.783175e-01	ci right 1.936658e-01	k: 1859	n:10000
KS ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
DCLRE1B   10000 perm   2 sec   (6330 perm/sec)   p_kst 1.050000e-02   p_cons 1.859000e-01   p_joint 3.800000e-02

Joint ci ratio: 1.389877e-01	ci left: 3.558584e-02	ci right 4.094947e-02	k: 764	n:20000
Cons ci ratio: 5.770006e-02	ci left: 1.820619e-01	ci right 1.929291e-01	k: 3749	n:20000
KS ci ratio: 2.671533e-01	ci left: 9.227203e-03	ci right 1.211771e-02	k: 212	n:20000
DCLRE1B   20000 perm   3 sec   (5718 perm/sec)   p_kst 1.060000e-02   p_cons 1.874500e-01   p_joint 3.820000e-02

Joint ci ratio: 1.099689e-01	ci left: 3.839460e-02	ci right 4.289491e-02	k: 1218	n:30000
Cons ci ratio: 4.697341e-02	ci left: 1.839558e-01	ci right 1.928380e-01	k: 5651	n:30000
KS ci ratio: 2.120119e-01	ci left: 1.007160e-02	ci right 1.249111e-02	k: 337	n:30000
DCLRE1B   30000 perm   5 sec   (5475 perm/sec)   p_kst 1.123333e-02   p_cons 1.883667e-01   p_joint 4.060000e-02

Joint ci ratio: 6.412086e-02	ci left: 8.270349e-02	ci right 8.820687e-02	k: 3417	n:40000
Cons ci ratio: 4.059069e-02	ci left: 1.852231e-01	ci right 1.929221e-01	k: 7562	n:40000
KS ci ratio: 1.827220e-01	ci left: 1.033500e-02	ci right 1.243684e-02	k: 454	n:40000
DCLRE1B   40000 perm   8 sec   (5307 perm/sec)   p_kst 1.135000e-02   p_cons 1.890500e-01   p_joint 8.542500e-02

Joint ci ratio: 6.639023e-02	ci left: 6.301196e-02	ci right 6.735869e-02	k: 3258	n:50000
Cons ci ratio: 3.643324e-02	ci left: 1.845636e-01	ci right 1.914326e-01	k: 9399	n:50000
KS ci ratio: 1.647184e-01	ci left: 1.027686e-02	ci right 1.214054e-02	k: 559	n:50000
DCLRE1B   50000 perm   10 sec   (5174 perm/sec)   p_kst 1.118000e-02   p_cons 1.879800e-01   p_joint 6.516000e-02

Joint ci ratio: 6.126022e-02	ci left: 6.192297e-02	ci right 6.585268e-02	k: 3832	n:60000
Cons ci ratio: 3.329341e-02	ci left: 1.845493e-01	ci right 1.908142e-01	k: 11260	n:60000
KS ci ratio: 1.488070e-01	ci left: 1.058197e-02	ci right 1.229911e-02	k: 685	n:60000
DCLRE1B   60000 perm   12 sec   (4910 perm/sec)   p_kst 1.141667e-02   p_cons 1.876667e-01   p_joint 6.386667e-02

Joint ci ratio: 5.904876e-02	ci left: 5.747697e-02	ci right 6.098825e-02	k: 4145	n:70000
Cons ci ratio: 3.076153e-02	ci left: 1.853955e-01	ci right 1.912018e-01	k: 13180	n:70000
KS ci ratio: 1.380598e-01	ci left: 1.059913e-02	ci right 1.218462e-02	k: 796	n:70000
DCLRE1B   70000 perm   15 sec   (4818 perm/sec)   p_kst 1.137143e-02   p_cons 1.882857e-01   p_joint 5.921429e-02

Joint ci ratio: 6.201897e-02	ci left: 4.608549e-02	ci right 4.904743e-02	k: 3804	n:80000
Cons ci ratio: 2.878892e-02	ci left: 1.854344e-01	ci right 1.908632e-01	k: 15051	n:80000
KS ci ratio: 1.293486e-01	ci left: 1.061537e-02	ci right 1.209539e-02	k: 907	n:80000
DCLRE1B   80000 perm   17 sec   (4695 perm/sec)   p_kst 1.133750e-02   p_cons 1.881375e-01   p_joint 4.755000e-02

Joint ci ratio: 5.171911e-02	ci left: 5.844612e-02	ci right 6.156010e-02	k: 5399	n:90000
Cons ci ratio: 2.711732e-02	ci left: 1.858719e-01	ci right 1.909926e-01	k: 16958	n:90000
KS ci ratio: 1.218607e-01	ci left: 1.067355e-02	ci right 1.206932e-02	k: 1022	n:90000
DCLRE1B   90000 perm   20 sec   (4612 perm/sec)   p_kst 1.135556e-02   p_cons 1.884222e-01   p_joint 5.998889e-02

Joint ci ratio: 3.858641e-02	ci left: 9.174204e-02	ci right 9.536157e-02	k: 9354	n:100000
Cons ci ratio: 2.568322e-02	ci left: 1.865078e-01	ci right 1.913702e-01	k: 18893	n:100000
KS ci ratio: 1.163166e-01	ci left: 1.057639e-02	ci right 1.189219e-02	k: 1122	n:100000
DCLRE1B   100000 perm   22 sec   (4532 perm/sec)   p_kst 1.122000e-02   p_cons 1.889300e-01   p_joint 9.354000e-02

Joint ci ratio: 4.081382e-02	ci left: 7.579142e-02	ci right 7.895818e-02	k: 8510	n:110000
Cons ci ratio: 2.450428e-02	ci left: 1.864186e-01	ci right 1.910524e-01	k: 20760	n:110000
KS ci ratio: 1.114662e-01	ci left: 1.049807e-02	ci right 1.174609e-02	k: 1222	n:110000
DCLRE1B   110000 perm   25 sec   (4454 perm/sec)   p_kst 1.110909e-02   p_cons 1.887273e-01   p_joint 7.736364e-02

Joint ci ratio: 4.498652e-02	ci left: 5.816806e-02	ci right 6.085328e-02	k: 7140	n:120000
Cons ci ratio: 2.345172e-02	ci left: 1.866389e-01	ci right 1.910761e-01	k: 22662	n:120000
KS ci ratio: 1.068903e-01	ci left: 1.049055e-02	ci right 1.168325e-02	k: 1329	n:120000
DCLRE1B   120000 perm   27 sec   (4382 perm/sec)   p_kst 1.107500e-02   p_cons 1.888500e-01   p_joint 5.950000e-02

Joint ci ratio: 3.750783e-02	ci left: 7.605210e-02	ci right 7.896677e-02	k: 10075	n:130000
Cons ci ratio: 2.253938e-02	ci left: 1.866221e-01	ci right 1.908841e-01	k: 24537	n:130000
KS ci ratio: 1.027270e-01	ci left: 1.050757e-02	ci right 1.165286e-02	k: 1439	n:130000
DCLRE1B   130000 perm   30 sec   (4312 perm/sec)   p_kst 1.106923e-02   p_cons 1.887462e-01   p_joint 7.750000e-02

Joint ci ratio: 3.272326e-02	ci left: 9.144807e-02	ci right 9.449739e-02	k: 13015	n:140000
Cons ci ratio: 2.172838e-02	ci left: 1.865751e-01	ci right 1.906807e-01	k: 26407	n:140000
KS ci ratio: 9.888610e-02	ci left: 1.055079e-02	ci right 1.165531e-02	k: 1553	n:140000
DCLRE1B   140000 perm   33 sec   (4246 perm/sec)   p_kst 1.109286e-02   p_cons 1.886214e-01   p_joint 9.296429e-02

Outputting figure to mutsig2_images.part000000000048/DCLRE1B.2_1615_140000_0.011093_0.18862_0.092964.png
                gene_name: DCLRE1B
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.094 

Current progress: 78 percent done.
DCP1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.026603e-02	ci left: 7.809707e-01	ci right 7.970605e-01	k: 7891	n:10000
Cons ci ratio: 2.388268e-03	ci left: 9.950195e-01	ci right 9.974774e-01	k: 9964	n:10000
KS ci ratio: 3.767188e-02	ci left: 5.099533e-01	ci right 5.296352e-01	k: 5198	n:10000
DCP1B   10000 perm   2 sec   (6164 perm/sec)   p_kst 5.198000e-01   p_cons 9.964000e-01   p_joint 7.891000e-01

Outputting figure to mutsig2_images.part000000000048/DCP1B.2_1890_10000_0.5198_0.9964_0.7891.png
                gene_name: DCP1B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 80 percent done.
DCST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.729973e-01	ci left: 1.743979e-02	ci right 2.304459e-02	k: 201	n:10000
Cons ci ratio: 2.510420e-01	ci left: 2.080800e-02	ci right 2.687375e-02	k: 237	n:10000
KS ci ratio: 5.623661e-02	ci left: 3.177077e-01	ci right 3.361932e-01	k: 3269	n:10000
DCST1   10000 perm   2 sec   (6021 perm/sec)   p_kst 3.269000e-01   p_cons 2.370000e-02   p_joint 2.010000e-02

Joint ci ratio: 1.960353e-01	ci left: 1.767633e-02	ci right 2.156510e-02	k: 391	n:20000
Cons ci ratio: 1.720426e-01	ci left: 2.311997e-02	ci right 2.751951e-02	k: 505	n:20000
KS ci ratio: 4.029985e-02	ci left: 3.146306e-01	ci right 3.276214e-01	k: 6422	n:20000
DCST1   20000 perm   4 sec   (5365 perm/sec)   p_kst 3.211000e-01   p_cons 2.525000e-02   p_joint 1.955000e-02

Joint ci ratio: 1.692487e-01	ci left: 1.607835e-02	ci right 1.908278e-02	k: 526	n:30000
Cons ci ratio: 1.380660e-01	ci left: 2.435743e-02	ci right 2.800178e-02	k: 784	n:30000
KS ci ratio: 3.291854e-02	ci left: 3.156516e-01	ci right 3.262498e-01	k: 9628	n:30000
DCST1   30000 perm   6 sec   (5120 perm/sec)   p_kst 3.209333e-01   p_cons 2.613333e-02   p_joint 1.753333e-02

Joint ci ratio: 1.663011e-01	ci left: 1.255978e-02	ci right 1.486162e-02	k: 547	n:40000
Cons ci ratio: 1.272475e-01	ci left: 2.169850e-02	ci right 2.467128e-02	k: 926	n:40000
KS ci ratio: 2.843597e-02	ci left: 3.174715e-01	ci right 3.266544e-01	k: 12882	n:40000
DCST1   40000 perm   8 sec   (4945 perm/sec)   p_kst 3.220500e-01   p_cons 2.315000e-02   p_joint 1.367500e-02

Joint ci ratio: 1.520415e-01	ci left: 1.212171e-02	ci right 1.413540e-02	k: 655	n:50000
Cons ci ratio: 1.132524e-01	ci left: 2.207324e-02	ci right 2.474249e-02	k: 1169	n:50000
KS ci ratio: 2.545927e-02	ci left: 3.175262e-01	ci right 3.257345e-01	k: 16081	n:50000
DCST1   50000 perm   10 sec   (4816 perm/sec)   p_kst 3.216200e-01   p_cons 2.338000e-02   p_joint 1.310000e-02

Joint ci ratio: 1.418570e-01	ci left: 1.167456e-02	ci right 1.347305e-02	k: 753	n:60000
Cons ci ratio: 1.034605e-01	ci left: 2.215643e-02	ci right 2.458997e-02	k: 1401	n:60000
KS ci ratio: 2.313704e-02	ci left: 3.198401e-01	ci right 3.273436e-01	k: 19415	n:60000
DCST1   60000 perm   13 sec   (4715 perm/sec)   p_kst 3.235833e-01   p_cons 2.335000e-02   p_joint 1.255000e-02

Joint ci ratio: 1.501506e-01	ci left: 8.918411e-03	ci right 1.037981e-02	k: 674	n:70000
Cons ci ratio: 9.550724e-02	ci left: 2.237649e-02	ci right 2.463467e-02	k: 1644	n:70000
KS ci ratio: 2.135868e-02	ci left: 3.213880e-01	ci right 3.283408e-01	k: 22740	n:70000
DCST1   70000 perm   15 sec   (4617 perm/sec)   p_kst 3.248571e-01   p_cons 2.348571e-02   p_joint 9.628571e-03

Joint ci ratio: 1.348650e-01	ci left: 9.744804e-03	ci right 1.116603e-02	k: 835	n:80000
Cons ci ratio: 8.919327e-02	ci left: 2.252247e-02	ci right 2.463727e-02	k: 1885	n:80000
KS ci ratio: 1.995176e-02	ci left: 3.222158e-01	ci right 3.287218e-01	k: 26037	n:80000
DCST1   80000 perm   18 sec   (4529 perm/sec)   p_kst 3.254625e-01   p_cons 2.356250e-02   p_joint 1.043750e-02

Joint ci ratio: 1.278753e-01	ci left: 9.672157e-03	ci right 1.100413e-02	k: 929	n:90000
Cons ci ratio: 8.441370e-02	ci left: 2.241132e-02	ci right 2.439734e-02	k: 2105	n:90000
KS ci ratio: 1.884491e-02	ci left: 3.216076e-01	ci right 3.277370e-01	k: 29220	n:90000
DCST1   90000 perm   20 sec   (4448 perm/sec)   p_kst 3.246667e-01   p_cons 2.338889e-02   p_joint 1.032222e-02

Joint ci ratio: 1.207439e-01	ci left: 9.799859e-03	ci right 1.106878e-02	k: 1042	n:100000
Cons ci ratio: 8.027532e-02	ci left: 2.235425e-02	ci right 2.423354e-02	k: 2328	n:100000
KS ci ratio: 1.788061e-02	ci left: 3.216981e-01	ci right 3.275121e-01	k: 32460	n:100000
DCST1   100000 perm   23 sec   (4368 perm/sec)   p_kst 3.246000e-01   p_cons 2.328000e-02   p_joint 1.042000e-02

Joint ci ratio: 1.050513e-01	ci left: 1.184292e-02	ci right 1.316479e-02	k: 1374	n:110000
Cons ci ratio: 7.624904e-02	ci left: 2.256822e-02	ci right 2.436611e-02	k: 2580	n:110000
KS ci ratio: 1.706516e-02	ci left: 3.214068e-01	ci right 3.269479e-01	k: 35659	n:110000
DCST1   110000 perm   26 sec   (4293 perm/sec)   p_kst 3.241727e-01   p_cons 2.345455e-02   p_joint 1.249091e-02

Joint ci ratio: 1.134556e-01	ci left: 9.290843e-03	ci right 1.041637e-02	k: 1181	n:120000
Cons ci ratio: 7.307786e-02	ci left: 2.256024e-02	ci right 2.427957e-02	k: 2809	n:120000
KS ci ratio: 1.634138e-02	ci left: 3.214520e-01	ci right 3.267565e-01	k: 38892	n:120000
DCST1   120000 perm   28 sec   (4221 perm/sec)   p_kst 3.241000e-01   p_cons 2.340833e-02   p_joint 9.841667e-03

Joint ci ratio: 1.087690e-01	ci left: 9.353950e-03	ci right 1.043731e-02	k: 1285	n:130000
Cons ci ratio: 7.023656e-02	ci left: 2.257748e-02	ci right 2.422849e-02	k: 3041	n:130000
KS ci ratio: 1.569178e-02	ci left: 3.217938e-01	ci right 3.268909e-01	k: 42164	n:130000
DCST1   130000 perm   31 sec   (4149 perm/sec)   p_kst 3.243385e-01   p_cons 2.339231e-02   p_joint 9.884615e-03

Joint ci ratio: 1.046570e-01	ci left: 9.401903e-03	ci right 1.044712e-02	k: 1388	n:140000
Cons ci ratio: 6.773461e-02	ci left: 2.257230e-02	ci right 2.416181e-02	k: 3270	n:140000
KS ci ratio: 1.511493e-02	ci left: 3.220619e-01	ci right 3.269740e-01	k: 45432	n:140000
DCST1   140000 perm   34 sec   (4081 perm/sec)   p_kst 3.245143e-01   p_cons 2.335714e-02   p_joint 9.914286e-03

Joint ci ratio: 1.074183e-01	ci left: 8.327058e-03	ci right 9.278742e-03	k: 1319	n:150000
Cons ci ratio: 6.556866e-02	ci left: 2.250968e-02	ci right 2.404216e-02	k: 3490	n:150000
KS ci ratio: 1.459269e-02	ci left: 3.224368e-01	ci right 3.271833e-01	k: 48721	n:150000
DCST1   150000 perm   37 sec   (4019 perm/sec)   p_kst 3.248067e-01   p_cons 2.326667e-02   p_joint 8.793333e-03

Joint ci ratio: 9.683821e-02	ci left: 9.646326e-03	ci right 1.063405e-02	k: 1621	n:160000
Cons ci ratio: 6.371235e-02	ci left: 2.237561e-02	ci right 2.385424e-02	k: 3697	n:160000
KS ci ratio: 1.414365e-02	ci left: 3.220687e-01	ci right 3.266626e-01	k: 51898	n:160000
DCST1   160000 perm   40 sec   (3959 perm/sec)   p_kst 3.243625e-01   p_cons 2.310625e-02   p_joint 1.013125e-02

Outputting figure to mutsig2_images.part000000000048/DCST1.2_2185_160000_0.32436_0.023106_0.010131.png
                gene_name: DCST1
               theta_stop: 0.097 
                    nperm: 160000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.010 
     ci_joint_bounds_left: 0.0096 
    ci_joint_bounds_right: 0.011 

Current progress: 81 percent done.
DCUN1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.997954e-03	ci left: 9.656240e-01	ci right 9.724991e-01	k: 9692	n:10000
Cons ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
KS ci ratio: 1.569355e-02	ci left: 8.549826e-01	ci right 8.686059e-01	k: 8619	n:10000
DCUN1D1   10000 perm   1 sec   (6798 perm/sec)   p_kst 8.619000e-01   p_cons 2.275000e-01   p_joint 9.692000e-01

Outputting figure to mutsig2_images.part000000000048/DCUN1D1.2_808_10000_0.8619_0.2275_0.9692.png
                gene_name: DCUN1D1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 83 percent done.
DCUN1D3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.076007e-02	ci left: 9.248228e-01	ci right 9.349250e-01	k: 9300	n:10000
Cons ci ratio: 5.041374e-02	ci left: 3.671899e-01	ci right 3.862820e-01	k: 3767	n:10000
KS ci ratio: 2.923175e-02	ci left: 6.331167e-01	ci right 6.520002e-01	k: 6426	n:10000
DCUN1D3   10000 perm   1 sec   (6685 perm/sec)   p_kst 6.426000e-01   p_cons 3.767000e-01   p_joint 9.300000e-01

Outputting figure to mutsig2_images.part000000000048/DCUN1D3.2_923_10000_0.6426_0.3767_0.93.png
                gene_name: DCUN1D3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 85 percent done.
DDAH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.382332e-02	ci left: 4.346283e-01	ci right 4.542041e-01	k: 4444	n:10000
KS ci ratio: 4.068814e-02	ci left: 4.714637e-01	ci right 4.911472e-01	k: 4813	n:10000
DDAH2   10000 perm   1 sec   (6819 perm/sec)   p_kst 4.813000e-01   p_cons 4.444000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDAH2.2_882_10000_0.4813_0.4444_1.png
                gene_name: DDAH2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
DDI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.608017e-02	ci left: 8.489651e-01	ci right 8.628268e-01	k: 8560	n:10000
Cons ci ratio: 7.213041e-02	ci left: 2.197085e-01	ci right 2.362502e-01	k: 2279	n:10000
KS ci ratio: 3.837967e-02	ci left: 5.006505e-01	ci right 5.203434e-01	k: 5105	n:10000
DDI2   10000 perm   2 sec   (6599 perm/sec)   p_kst 5.105000e-01   p_cons 2.279000e-01   p_joint 8.560000e-01

Outputting figure to mutsig2_images.part000000000048/DDI2.2_1236_10000_0.5105_0.2279_0.856.png
                gene_name: DDI2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 88 percent done.
DDO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.228968e-02	ci left: 3.502859e-01	ci right 3.691959e-01	k: 3597	n:10000
Cons ci ratio: 3.749872e-02	ci left: 5.122545e-01	ci right 5.319326e-01	k: 5221	n:10000
KS ci ratio: 7.291787e-02	ci left: 2.159584e-01	ci right 2.324025e-01	k: 2241	n:10000
DDO   10000 perm   2 sec   (6629 perm/sec)   p_kst 2.241000e-01   p_cons 5.221000e-01   p_joint 3.597000e-01

Outputting figure to mutsig2_images.part000000000048/DDO.2_1130_10000_0.2241_0.5221_0.3597.png
                gene_name: DDO
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 90 percent done.
DDOST
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.746352e-02	ci left: 2.438103e-01	ci right 2.609341e-01	k: 2523	n:10000
Cons ci ratio: 5.941142e-02	ci left: 2.941996e-01	ci right 3.123152e-01	k: 3032	n:10000
KS ci ratio: 1.061000e-01	ci left: 1.136922e-01	ci right 1.265300e-01	k: 1200	n:10000
DDOST   10000 perm   1 sec   (6669 perm/sec)   p_kst 1.200000e-01   p_cons 3.032000e-01   p_joint 2.523000e-01

Joint ci ratio: 4.879688e-02	ci left: 2.379610e-01	ci right 2.499135e-01	k: 4878	n:20000
Cons ci ratio: 4.243665e-02	ci left: 2.926596e-01	ci right 3.053988e-01	k: 5980	n:20000
KS ci ratio: 7.585322e-02	ci left: 1.133139e-01	ci right 1.222976e-01	k: 2355	n:20000
DDOST   20000 perm   3 sec   (5909 perm/sec)   p_kst 1.177500e-01   p_cons 2.990000e-01   p_joint 2.439000e-01

Outputting figure to mutsig2_images.part000000000048/DDOST.2_1415_20000_0.11775_0.299_0.2439.png
                gene_name: DDOST
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 92 percent done.
DDX28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.287501e-02	ci left: 1.441328e-01	ci right 1.582710e-01	k: 1511	n:10000
Cons ci ratio: 7.215091e-02	ci left: 2.196098e-01	ci right 2.361490e-01	k: 2278	n:10000
KS ci ratio: 7.644396e-02	ci left: 2.001794e-01	ci right 2.161909e-01	k: 2081	n:10000
DDX28   10000 perm   2 sec   (6392 perm/sec)   p_kst 2.081000e-01   p_cons 2.278000e-01   p_joint 1.511000e-01

Outputting figure to mutsig2_images.part000000000048/DDX28.2_1627_10000_0.2081_0.2278_0.1511.png
                gene_name: DDX28
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 93 percent done.
DDX3X
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.272828e-02	ci left: 7.397735e-01	ci right 7.568816e-01	k: 7484	n:10000
KS ci ratio: 5.247176e-02	ci left: 3.486956e-01	ci right 3.675871e-01	k: 3581	n:10000
DDX3X   10000 perm   2 sec   (6068 perm/sec)   p_kst 3.581000e-01   p_cons 7.484000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000048/DDX3X.2_2057_10000_0.3581_0.7484_1.png
                gene_name: DDX3X
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
DDX41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.600075e-02	ci left: 5.325743e-01	ci right 5.522010e-01	k: 5424	n:10000
Cons ci ratio: 1.323674e-02	ci left: 8.915942e-01	ci right 9.035731e-01	k: 8977	n:10000
KS ci ratio: 9.416248e-02	ci left: 1.407013e-01	ci right 1.547046e-01	k: 1476	n:10000
DDX41   10000 perm   2 sec   (6186 perm/sec)   p_kst 1.476000e-01   p_cons 8.977000e-01   p_joint 5.424000e-01

Outputting figure to mutsig2_images.part000000000048/DDX41.2_1937_10000_0.1476_0.8977_0.5424.png
                gene_name: DDX41
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 97 percent done.
DDX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.869771e-02	ci left: 3.835091e-01	ci right 4.027532e-01	k: 3931	n:10000
Cons ci ratio: 2.283688e-02	ci left: 7.379539e-01	ci right 7.551022e-01	k: 7466	n:10000
KS ci ratio: 5.443389e-02	ci left: 3.321036e-01	ci right 3.507889e-01	k: 3414	n:10000
DDX5   10000 perm   2 sec   (5860 perm/sec)   p_kst 3.414000e-01   p_cons 7.466000e-01   p_joint 3.931000e-01

Outputting figure to mutsig2_images.part000000000048/DDX5.2_1897_10000_0.3414_0.7466_0.3931.png
                gene_name: DDX5
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 98 percent done.
DDX52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.456684e-02	ci left: 5.527100e-01	ci right 5.722536e-01	k: 5625	n:10000
Cons ci ratio: 3.806611e-02	ci left: 5.047513e-01	ci right 5.244402e-01	k: 5146	n:10000
KS ci ratio: 4.462184e-02	ci left: 4.257520e-01	ci right 4.452856e-01	k: 4355	n:10000
DDX52   10000 perm   2 sec   (6166 perm/sec)   p_kst 4.355000e-01   p_cons 5.146000e-01   p_joint 5.625000e-01

Outputting figure to mutsig2_images.part000000000048/DDX52.2_1860_10000_0.4355_0.5146_0.5625.png
                gene_name: DDX52
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000048
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 48 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1417>
Subject: Job 9893909: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1417>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000049> was used as the working directory.
Started at Sat Oct  6 00:04:56 2012
Results reported at Sat Oct  6 00:15:21 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000049.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000049.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 49  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000049.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    671.88 sec.
    Max Memory :      3635 MB
    Max Swap   :      6013 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
49
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 49
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 49: processing genes 4328 - 4417
Calculating significance of each gene.
Using projection method.
4328	DEDD2	1
4329	DEF6	4.256451e-01
4330	DEF8	9.170642e-01
4331	DEFA1	1
4332	DEFA1B	1
4333	DEFA3	1
4334	DEFA4	1
4335	DEFA5	1
4336	DEFA6	1
4337	DEFB1	1
4338	DEFB104A	1
4339	DEFB104B	1
4340	DEFB106A	1
4341	DEFB106B	1
4342	DEFB108B	1
4343	DEFB110	1
4344	DEFB112	1.499175e-02
4345	DEFB113	2.277641e-01
4346	DEFB114	2.725002e-01
4347	DEFB115	1
4348	DEFB116	3.950008e-02
4349	DEFB118	1
4350	DEFB119	1.046220e-02
4351	DEFB121	1
4352	DEFB123	1
4353	DEFB124	1
4354	DEFB125	4.506421e-01
4355	DEFB126	1.775041e-01
4356	DEFB127	3.460673e-01
4357	DEFB128	1.491702e-01
4358	DEFB129	1.152170e-01
4359	DEFB131	1
4360	DEFB132	1
4361	DEFB134	2.489378e-01
4362	DEFB135	7.086417e-02
4363	DEFB136	2.673804e-01
4364	DEFB4A	1
4365	DEGS1	2.350157e-01
4366	DEGS2	1
4367	DEK	7.727142e-01
In gene DEM1 the following bins exceed PROBCAP:
    READ-AG-3580	categ 6	N = 1095    n = 1	mu =   1.72e-07
4368	DEM1	1.699860e-01
In gene DENND1A the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 2957    n = 1	mu =   7.59e-07
4369	DENND1A	2.328094e-01
4370	DENND1B	6.937938e-01
4371	DENND1C	9.875187e-01
4372	DENND2A	9.923206e-01
4373	DENND2C	1.880927e-02
4374	DENND2D	2.082934e-01
4375	DENND3	1.995804e-01
4376	DENND4A	1.439355e-01
4377	DENND4B	9.561047e-01
4378	DENND4C	6.889733e-01
4379	DENND5A	4.569010e-01
4380	DENND5B	2.915192e-01
4381	DENR	4.722444e-01
4382	DEPDC1	8.930954e-01
4383	DEPDC1B	7.767553e-01
4384	DEPDC4	5.012620e-01
4385	DEPDC5	8.634887e-01
4386	DEPDC6	3.900016e-01
4387	DEPDC7	3.615791e-01
4388	DERA	4.308563e-01
4389	DERL1	1
4390	DERL2	2.953276e-01
4391	DERL3	1
4392	DES	9.062042e-01
4393	DET1	8.485752e-01
4394	DEXI	1
4395	DFFA	2.284976e-01
4396	DFFB	5.627009e-01
4397	DFNA5	4.295551e-01
4398	DFNB31	3.995761e-01
4399	DFNB59	7.161725e-01
4400	DGAT2	2.234674e-01
4401	DGAT2L6	5.934073e-01
4402	DGCR14	9.427932e-01
4403	DGCR2	9.010911e-01
4404	DGCR6	1
4405	DGCR6L	1
4406	DGCR8	8.404983e-01
4407	DGKA	9.357102e-01
4408	DGKB	1.725984e-01
4409	DGKD	1.018422e-01
4410	DGKE	8.450850e-01
4411	DGKG	7.849026e-01
4412	DGKH	1.064791e-01
4413	DGKI	6.546463e-03
4414	DGKK	9.440717e-01
4415	DGKQ	1
4416	DGKZ	8.726200e-01
4417	DGUOK	1
Done

Running MutSig 2:
Scatter job 49: processing genes 4328 - 4417
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DENND4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.244324e-02	ci left: 1.453096e-01	ci right 1.594935e-01	k: 1523	n:10000
Cons ci ratio: 1.208445e-01	ci left: 8.941891e-02	ci right 1.010181e-01	k: 951	n:10000
KS ci ratio: 4.993416e-02	ci left: 3.716666e-01	ci right 3.908027e-01	k: 3812	n:10000
DENND4A   10000 perm   3 sec   (3090 perm/sec)   p_kst 3.812000e-01   p_cons 9.510000e-02   p_joint 1.523000e-01

Joint ci ratio: 6.496643e-02	ci left: 1.489738e-01	ci right 1.590270e-01	k: 3079	n:20000
Cons ci ratio: 8.520455e-02	ci left: 9.160790e-02	ci right 9.981008e-02	k: 1913	n:20000
KS ci ratio: 3.479773e-02	ci left: 3.813878e-01	ci right 3.949448e-01	k: 7763	n:20000
DENND4A   20000 perm   11 sec   (1780 perm/sec)   p_kst 3.881500e-01   p_cons 9.565000e-02   p_joint 1.539500e-01

Outputting figure to mutsig2_images.part000000000049/DENND4A.15_5845_20000_0.38815_0.09565_0.15395.png
                gene_name: DENND4A
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.100 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 2 percent done.
DGKD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.590614e-02	ci left: 4.118954e-01	ci right 4.313503e-01	k: 4216	n:10000
Cons ci ratio: 4.954487e-02	ci left: 3.753480e-01	ci right 3.945190e-01	k: 3849	n:10000
KS ci ratio: 6.259518e-02	ci left: 2.727991e-01	ci right 2.905282e-01	k: 2816	n:10000
DGKD   10000 perm   3 sec   (3726 perm/sec)   p_kst 2.816000e-01   p_cons 3.849000e-01   p_joint 4.216000e-01

Outputting figure to mutsig2_images.part000000000049/DGKD.12_3789_10000_0.2816_0.3849_0.4216.png
                gene_name: DGKD
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 5 percent done.
DENND3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.233511e-02	ci left: 3.498883e-01	ci right 3.687937e-01	k: 3593	n:10000
Cons ci ratio: 8.271402e-02	ci left: 1.757597e-01	ci right 1.910252e-01	k: 1833	n:10000
KS ci ratio: 4.890240e-02	ci left: 3.815183e-01	ci right 4.007452e-01	k: 3911	n:10000
DENND3   10000 perm   2 sec   (4026 perm/sec)   p_kst 3.911000e-01   p_cons 1.833000e-01   p_joint 3.593000e-01

Outputting figure to mutsig2_images.part000000000049/DENND3.10_3685_10000_0.3911_0.1833_0.3593.png
                gene_name: DENND3
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 7 percent done.
DGKH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.927397e-02	ci left: 3.779354e-01	ci right 3.971302e-01	k: 3875	n:10000
Cons ci ratio: 1.216226e-01	ci left: 8.834910e-02	ci right 9.988860e-02	k: 940	n:10000
KS ci ratio: 3.081627e-02	ci left: 6.083937e-01	ci right 6.275375e-01	k: 6180	n:10000
DGKH   10000 perm   2 sec   (4634 perm/sec)   p_kst 6.180000e-01   p_cons 9.400000e-02   p_joint 3.875000e-01

Joint ci ratio: 4.491595e-02	ci left: 2.695645e-01	ci right 2.820008e-01	k: 5515	n:20000
Cons ci ratio: 8.572558e-02	ci left: 9.057813e-02	ci right 9.874015e-02	k: 1892	n:20000
KS ci ratio: 2.192553e-02	ci left: 6.083152e-01	ci right 6.218513e-01	k: 12302	n:20000
DGKH   20000 perm   5 sec   (4155 perm/sec)   p_kst 6.151000e-01   p_cons 9.460000e-02   p_joint 2.757500e-01

Outputting figure to mutsig2_images.part000000000049/DGKH.10_3783_20000_0.6151_0.0946_0.27575.png
                gene_name: DGKH
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 10 percent done.
DGKI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.497592e-02	ci left: 5.468981e-01	ci right 5.664689e-01	k: 5567	n:10000
Cons ci ratio: 3.898308e-02	ci left: 4.928507e-01	ci right 5.125477e-01	k: 5027	n:10000
KS ci ratio: 4.364630e-02	ci left: 4.366235e-01	ci right 4.562078e-01	k: 4464	n:10000
DGKI   10000 perm   2 sec   (4712 perm/sec)   p_kst 4.464000e-01   p_cons 5.027000e-01   p_joint 5.567000e-01

Outputting figure to mutsig2_images.part000000000049/DGKI.10_3334_10000_0.4464_0.5027_0.5567.png
                gene_name: DGKI
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 12 percent done.
DENND2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.342837e-02	ci left: 7.280508e-01	ci right 7.454111e-01	k: 7368	n:10000
Cons ci ratio: 3.965135e-02	ci left: 4.843537e-01	ci right 5.040497e-01	k: 4942	n:10000
KS ci ratio: 4.054989e-02	ci left: 4.731620e-01	ci right 4.928479e-01	k: 4830	n:10000
DENND2C   10000 perm   2 sec   (4526 perm/sec)   p_kst 4.830000e-01   p_cons 4.942000e-01   p_joint 7.368000e-01

Outputting figure to mutsig2_images.part000000000049/DENND2C.9_2684_10000_0.483_0.4942_0.7368.png
                gene_name: DENND2C
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 14 percent done.
DGKB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.428899e-02	ci left: 3.332954e-01	ci right 3.519964e-01	k: 3426	n:10000
Cons ci ratio: 1.096042e-01	ci left: 1.071510e-01	ci right 1.196752e-01	k: 1133	n:10000
KS ci ratio: 2.724812e-02	ci left: 6.649144e-01	ci right 6.833840e-01	k: 6742	n:10000
DGKB   10000 perm   2 sec   (4426 perm/sec)   p_kst 6.742000e-01   p_cons 1.133000e-01   p_joint 3.426000e-01

Joint ci ratio: 3.826909e-02	ci left: 3.374642e-01	ci right 3.506811e-01	k: 6881	n:20000
Cons ci ratio: 7.025272e-02	ci left: 1.299476e-01	ci right 1.394589e-01	k: 2693	n:20000
KS ci ratio: 1.919569e-02	ci left: 6.693130e-01	ci right 6.823359e-01	k: 13517	n:20000
DGKB   20000 perm   5 sec   (4006 perm/sec)   p_kst 6.758500e-01   p_cons 1.346500e-01   p_joint 3.440500e-01

Outputting figure to mutsig2_images.part000000000049/DGKB.9_2530_20000_0.67585_0.13465_0.34405.png
                gene_name: DGKB
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 17 percent done.
DFNB31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.121293e-01	ci left: 1.027615e-01	ci right 1.150674e-01	k: 1088	n:10000
Cons ci ratio: 1.331998e-01	ci left: 7.436791e-02	ci right 8.507844e-02	k: 796	n:10000
KS ci ratio: 1.072191e-01	ci left: 1.115436e-01	ci right 1.242799e-01	k: 1178	n:10000
DFNB31   10000 perm   2 sec   (4739 perm/sec)   p_kst 1.178000e-01   p_cons 7.960000e-02   p_joint 1.088000e-01

Joint ci ratio: 9.198045e-02	ci left: 7.940814e-02	ci right 8.711353e-02	k: 1664	n:20000
Cons ci ratio: 9.741266e-02	ci left: 7.124000e-02	ci right 7.858416e-02	k: 1497	n:20000
KS ci ratio: 7.662953e-02	ci left: 1.112489e-01	ci right 1.201632e-01	k: 2313	n:20000
DFNB31   20000 perm   5 sec   (4246 perm/sec)   p_kst 1.156500e-01   p_cons 7.485000e-02   p_joint 8.320000e-02

Outputting figure to mutsig2_images.part000000000049/DFNB31.8_2772_20000_0.11565_0.07485_0.0832.png
                gene_name: DFNB31
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.087 

Current progress: 19 percent done.
DENND1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.088478e-01	ci left: 1.085172e-01	ci right 1.211081e-01	k: 1147	n:10000
Cons ci ratio: 9.863257e-02	ci left: 1.296319e-01	ci right 1.431807e-01	k: 1363	n:10000
KS ci ratio: 1.400983e-01	ci left: 6.749259e-02	ci right 7.775805e-02	k: 725	n:10000
DENND1A   10000 perm   2 sec   (4294 perm/sec)   p_kst 7.250000e-02   p_cons 1.363000e-01   p_joint 1.147000e-01

Joint ci ratio: 1.033106e-01	ci left: 6.367065e-02	ci right 7.065583e-02	k: 1342	n:20000
Cons ci ratio: 6.898551e-02	ci left: 1.341840e-01	ci right 1.438212e-01	k: 2779	n:20000
KS ci ratio: 1.029821e-01	ci left: 6.406102e-02	ci right 7.106534e-02	k: 1350	n:20000
DENND1A   20000 perm   5 sec   (3928 perm/sec)   p_kst 6.750000e-02   p_cons 1.389500e-01   p_joint 6.710000e-02

Joint ci ratio: 8.802879e-02	ci left: 5.926432e-02	ci right 6.475421e-02	k: 1859	n:30000
Cons ci ratio: 5.621720e-02	ci left: 1.355319e-01	ci right 1.434047e-01	k: 4183	n:30000
KS ci ratio: 8.345751e-02	ci left: 6.563413e-02	ci right 7.138311e-02	k: 2054	n:30000
DENND1A   30000 perm   8 sec   (3775 perm/sec)   p_kst 6.846667e-02   p_cons 1.394333e-01   p_joint 6.196667e-02

Outputting figure to mutsig2_images.part000000000049/DENND1A.7_3225_30000_0.068467_0.13943_0.061967.png
                gene_name: DENND1A
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.065 

Current progress: 21 percent done.
DENND5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.621682e-02	ci left: 8.468243e-01	ci right 8.607689e-01	k: 8539	n:10000
Cons ci ratio: 4.797082e-02	ci left: 3.906772e-01	ci right 4.099809e-01	k: 4003	n:10000
KS ci ratio: 2.552061e-02	ci left: 6.932301e-01	ci right 7.112519e-01	k: 7023	n:10000
DENND5A   10000 perm   2 sec   (4338 perm/sec)   p_kst 7.023000e-01   p_cons 4.003000e-01   p_joint 8.539000e-01

Outputting figure to mutsig2_images.part000000000049/DENND5A.7_3956_10000_0.7023_0.4003_0.8539.png
                gene_name: DENND5A
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 24 percent done.
DEPDC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.379388e-02	ci left: 5.638367e-01	ci right 5.833204e-01	k: 5736	n:10000
Cons ci ratio: 8.786218e-02	ci left: 1.586572e-01	ci right 1.733379e-01	k: 1659	n:10000
KS ci ratio: 8.595771e-03	ci left: 9.499184e-01	ci right 9.582145e-01	k: 9542	n:10000
DEPDC5   10000 perm   2 sec   (4005 perm/sec)   p_kst 9.542000e-01   p_cons 1.659000e-01   p_joint 5.736000e-01

Outputting figure to mutsig2_images.part000000000049/DEPDC5.7_4971_10000_0.9542_0.1659_0.5736.png
                gene_name: DEPDC5
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 26 percent done.
DENND4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.362151e-02	ci left: 5.663433e-01	ci right 5.858123e-01	k: 5761	n:10000
Cons ci ratio: 3.279574e-02	ci left: 5.784793e-01	ci right 5.978693e-01	k: 5882	n:10000
KS ci ratio: 4.392105e-02	ci left: 4.335311e-01	ci right 4.531019e-01	k: 4433	n:10000
DENND4B   10000 perm   2 sec   (4227 perm/sec)   p_kst 4.433000e-01   p_cons 5.882000e-01   p_joint 5.761000e-01

Outputting figure to mutsig2_images.part000000000049/DENND4B.6_4599_10000_0.4433_0.5882_0.5761.png
                gene_name: DENND4B
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 29 percent done.
DENND5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.077377e-01	ci left: 1.105672e-01	ci right 1.232569e-01	k: 1168	n:10000
Cons ci ratio: 1.381586e-01	ci left: 6.933115e-02	ci right 7.971834e-02	k: 744	n:10000
KS ci ratio: 5.213117e-02	ci left: 3.516775e-01	ci right 3.706035e-01	k: 3611	n:10000
DENND5B   10000 perm   2 sec   (4223 perm/sec)   p_kst 3.611000e-01   p_cons 7.440000e-02   p_joint 1.168000e-01

Joint ci ratio: 5.008043e-02	ci left: 2.285925e-01	ci right 2.403848e-01	k: 4689	n:20000
Cons ci ratio: 9.906657e-02	ci left: 6.899234e-02	ci right 7.623250e-02	k: 1451	n:20000
KS ci ratio: 3.677448e-02	ci left: 3.555841e-01	ci right 3.689560e-01	k: 7245	n:20000
DENND5B   20000 perm   5 sec   (3754 perm/sec)   p_kst 3.622500e-01   p_cons 7.255000e-02   p_joint 2.344500e-01

Outputting figure to mutsig2_images.part000000000049/DENND5B.6_3909_20000_0.36225_0.07255_0.23445.png
                gene_name: DENND5B
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 31 percent done.
DENND4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.911583e-02	ci left: 4.911511e-01	ci right 5.108483e-01	k: 5010	n:10000
Cons ci ratio: 3.816527e-02	ci left: 5.034510e-01	ci right 5.231413e-01	k: 5133	n:10000
KS ci ratio: 6.025129e-02	ci left: 2.883517e-01	ci right 3.063665e-01	k: 2973	n:10000
DENND4C   10000 perm   3 sec   (3814 perm/sec)   p_kst 2.973000e-01   p_cons 5.133000e-01   p_joint 5.010000e-01

Outputting figure to mutsig2_images.part000000000049/DENND4C.5_5134_10000_0.2973_0.5133_0.501.png
                gene_name: DENND4C
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 33 percent done.
DGKK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.842359e-01	ci left: 8.324320e-03	ci right 1.236857e-02	k: 102	n:10000
Cons ci ratio: 5.830139e-01	ci left: 3.198812e-03	ci right 5.902342e-03	k: 44	n:10000
KS ci ratio: 6.345683e-02	ci left: 2.673539e-01	ci right 2.849767e-01	k: 2761	n:10000
DGKK   10000 perm   2 sec   (4362 perm/sec)   p_kst 2.761000e-01   p_cons 4.400000e-03   p_joint 1.020000e-02

Joint ci ratio: 1.320512e-01	ci left: 3.940703e-02	ci right 4.502705e-02	k: 843	n:20000
Cons ci ratio: 4.242687e-01	ci left: 3.351426e-03	ci right 5.197284e-03	k: 84	n:20000
KS ci ratio: 4.414716e-02	ci left: 2.764661e-01	ci right 2.889972e-01	k: 5654	n:20000
DGKK   20000 perm   5 sec   (3850 perm/sec)   p_kst 2.827000e-01   p_cons 4.200000e-03   p_joint 4.215000e-02

Joint ci ratio: 1.349218e-01	ci left: 2.551747e-02	ci right 2.924148e-02	k: 820	n:30000
Cons ci ratio: 3.457367e-01	ci left: 3.530325e-03	ci right 5.034838e-03	k: 127	n:30000
KS ci ratio: 3.615747e-02	ci left: 2.763824e-01	ci right 2.865932e-01	k: 8444	n:30000
DGKK   30000 perm   8 sec   (3565 perm/sec)   p_kst 2.814667e-01   p_cons 4.233333e-03   p_joint 2.733333e-02

Joint ci ratio: 1.101776e-01	ci left: 2.898247e-02	ci right 3.238611e-02	k: 1226	n:40000
Cons ci ratio: 3.064081e-01	ci left: 3.451342e-03	ci right 4.722318e-03	k: 162	n:40000
KS ci ratio: 3.134819e-02	ci left: 2.766235e-01	ci right 2.854583e-01	k: 11241	n:40000
DGKK   40000 perm   11 sec   (3490 perm/sec)   p_kst 2.810250e-01   p_cons 4.050000e-03   p_joint 3.065000e-02

Joint ci ratio: 1.087667e-01	ci left: 2.394117e-02	ci right 2.671432e-02	k: 1265	n:50000
Cons ci ratio: 2.725534e-01	ci left: 3.558858e-03	ci right 4.699898e-03	k: 205	n:50000
KS ci ratio: 2.810056e-02	ci left: 2.762067e-01	ci right 2.840989e-01	k: 14007	n:50000
DGKK   50000 perm   14 sec   (3453 perm/sec)   p_kst 2.801400e-01   p_cons 4.100000e-03   p_joint 2.530000e-02

Joint ci ratio: 8.370059e-02	ci left: 3.378861e-02	ci right 3.675656e-02	k: 2115	n:60000
Cons ci ratio: 2.354110e-01	ci left: 4.058617e-03	ci right 5.156815e-03	k: 275	n:60000
KS ci ratio: 2.559782e-02	ci left: 2.774057e-01	ci right 2.846154e-01	k: 16860	n:60000
DGKK   60000 perm   18 sec   (3413 perm/sec)   p_kst 2.810000e-01   p_cons 4.583333e-03   p_joint 3.525000e-02

Joint ci ratio: 8.246342e-02	ci left: 2.998038e-02	ci right 3.257295e-02	k: 2188	n:70000
Cons ci ratio: 2.156066e-01	ci left: 4.193291e-03	ci right 5.219858e-03	k: 328	n:70000
KS ci ratio: 2.365146e-02	ci left: 2.784835e-01	ci right 2.851631e-01	k: 19727	n:70000
DGKK   70000 perm   21 sec   (3370 perm/sec)   p_kst 2.818143e-01   p_cons 4.685714e-03   p_joint 3.125714e-02

Joint ci ratio: 1.115089e-01	ci left: 1.436355e-02	ci right 1.607187e-02	k: 1216	n:80000
Cons ci ratio: 2.030426e-01	ci left: 4.166622e-03	ci right 5.119849e-03	k: 370	n:80000
KS ci ratio: 2.214463e-02	ci left: 2.783230e-01	ci right 2.845678e-01	k: 22515	n:80000
DGKK   80000 perm   24 sec   (3323 perm/sec)   p_kst 2.814375e-01   p_cons 4.625000e-03   p_joint 1.520000e-02

Joint ci ratio: 1.058851e-01	ci left: 1.420516e-02	ci right 1.580410e-02	k: 1349	n:90000
Cons ci ratio: 1.890282e-01	ci left: 4.305975e-03	ci right 5.215287e-03	k: 427	n:90000
KS ci ratio: 2.084180e-02	ci left: 2.792057e-01	ci right 2.850972e-01	k: 25393	n:90000
DGKK   90000 perm   27 sec   (3277 perm/sec)   p_kst 2.821444e-01   p_cons 4.744444e-03   p_joint 1.498889e-02

Joint ci ratio: 8.841032e-02	ci left: 1.842692e-02	ci right 2.014113e-02	k: 1927	n:100000
Cons ci ratio: 1.784919e-01	ci left: 4.371485e-03	ci right 5.237621e-03	k: 479	n:100000
KS ci ratio: 1.981852e-02	ci left: 2.784149e-01	ci right 2.839978e-01	k: 28120	n:100000
DGKK   100000 perm   31 sec   (3225 perm/sec)   p_kst 2.812000e-01   p_cons 4.790000e-03   p_joint 1.927000e-02

Joint ci ratio: 9.168760e-02	ci left: 1.559547e-02	ci right 1.710292e-02	k: 1797	n:110000
Cons ci ratio: 1.706733e-01	ci left: 4.365297e-03	ci right 5.188420e-03	k: 524	n:110000
KS ci ratio: 1.891753e-02	ci left: 2.780912e-01	ci right 2.834113e-01	k: 30882	n:110000
DGKK   110000 perm   35 sec   (3186 perm/sec)   p_kst 2.807455e-01   p_cons 4.763636e-03   p_joint 1.633636e-02

Joint ci ratio: 9.383938e-02	ci left: 1.366028e-02	ci right 1.501334e-02	k: 1719	n:120000
Cons ci ratio: 1.633682e-01	ci left: 4.384811e-03	ci right 5.172748e-03	k: 572	n:120000
KS ci ratio: 1.811124e-02	ci left: 2.782253e-01	ci right 2.833186e-01	k: 33692	n:120000
DGKK   120000 perm   38 sec   (3145 perm/sec)   p_kst 2.807667e-01   p_cons 4.766667e-03   p_joint 1.432500e-02

Joint ci ratio: 7.973247e-02	ci left: 1.752552e-02	ci right 1.898839e-02	k: 2372	n:130000
Cons ci ratio: 1.561711e-01	ci left: 4.446311e-03	ci right 5.206805e-03	k: 626	n:130000
KS ci ratio: 1.739699e-02	ci left: 2.784119e-01	ci right 2.833056e-01	k: 36511	n:130000
DGKK   130000 perm   42 sec   (3108 perm/sec)   p_kst 2.808538e-01   p_cons 4.815385e-03   p_joint 1.824615e-02

Joint ci ratio: 7.529419e-02	ci left: 1.827723e-02	ci right 1.971421e-02	k: 2658	n:140000
Cons ci ratio: 1.489716e-01	ci left: 4.554693e-03	ci right 5.294612e-03	k: 688	n:140000
KS ci ratio: 1.676138e-02	ci left: 2.785681e-01	ci right 2.832838e-01	k: 39329	n:140000
DGKK   140000 perm   46 sec   (3070 perm/sec)   p_kst 2.809214e-01   p_cons 4.914286e-03   p_joint 1.898571e-02

Joint ci ratio: 6.681367e-02	ci left: 2.168327e-02	ci right 2.318860e-02	k: 3364	n:150000
Cons ci ratio: 1.436482e-01	ci left: 4.585030e-03	ci right 5.300979e-03	k: 740	n:150000
KS ci ratio: 1.629119e-02	ci left: 2.762192e-01	ci right 2.807627e-01	k: 41773	n:150000
DGKK   150000 perm   49 sec   (3032 perm/sec)   p_kst 2.784867e-01   p_cons 4.933333e-03   p_joint 2.242667e-02

Joint ci ratio: 6.600509e-02	ci left: 2.085634e-02	ci right 2.228607e-02	k: 3450	n:160000
Cons ci ratio: 1.392995e-01	ci left: 4.581818e-03	ci right 5.273809e-03	k: 787	n:160000
KS ci ratio: 1.576234e-02	ci left: 2.765850e-01	ci right 2.809855e-01	k: 44605	n:160000
DGKK   160000 perm   53 sec   (2996 perm/sec)   p_kst 2.787812e-01   p_cons 4.918750e-03   p_joint 2.156250e-02

Joint ci ratio: 6.963446e-02	ci left: 1.766236e-02	ci right 1.894238e-02	k: 3110	n:170000
Cons ci ratio: 1.349179e-01	ci left: 4.607695e-03	ci right 5.279947e-03	k: 839	n:170000
KS ci ratio: 1.530400e-02	ci left: 2.763289e-01	ci right 2.805963e-01	k: 47338	n:170000
DGKK   170000 perm   57 sec   (2961 perm/sec)   p_kst 2.784588e-01   p_cons 4.935294e-03   p_joint 1.829412e-02

Joint ci ratio: 6.944372e-02	ci left: 1.679003e-02	ci right 1.800336e-02	k: 3130	n:180000
Cons ci ratio: 1.315194e-01	ci left: 4.588007e-03	ci right 5.239207e-03	k: 883	n:180000
KS ci ratio: 1.486268e-02	ci left: 2.766628e-01	ci right 2.808110e-01	k: 50172	n:180000
DGKK   180000 perm   62 sec   (2925 perm/sec)   p_kst 2.787333e-01   p_cons 4.905556e-03   p_joint 1.738889e-02

Joint ci ratio: 6.806409e-02	ci left: 1.657355e-02	ci right 1.774651e-02	k: 3259	n:190000
Cons ci ratio: 1.278129e-01	ci left: 4.611343e-03	ci right 5.246012e-03	k: 935	n:190000
KS ci ratio: 1.447070e-02	ci left: 2.765954e-01	ci right 2.806324e-01	k: 52936	n:190000
DGKK   190000 perm   66 sec   (2890 perm/sec)   p_kst 2.786105e-01   p_cons 4.921053e-03   p_joint 1.715263e-02

Joint ci ratio: 6.666338e-02	ci left: 1.642813e-02	ci right 1.756593e-02	k: 3398	n:200000
Cons ci ratio: 1.242137e-01	ci left: 4.647113e-03	ci right 5.267369e-03	k: 990	n:200000
KS ci ratio: 1.411204e-02	ci left: 2.764264e-01	ci right 2.803600e-01	k: 55678	n:200000
DGKK   200000 perm   70 sec   (2854 perm/sec)   p_kst 2.783900e-01   p_cons 4.950000e-03   p_joint 1.699000e-02

Joint ci ratio: 6.493613e-02	ci left: 1.650295e-02	ci right 1.761520e-02	k: 3581	n:210000
Cons ci ratio: 1.214874e-01	ci left: 4.633521e-03	ci right 5.237412e-03	k: 1035	n:210000
KS ci ratio: 1.377536e-02	ci left: 2.763744e-01	ci right 2.802127e-01	k: 58441	n:210000
DGKK   210000 perm   74 sec   (2820 perm/sec)   p_kst 2.782905e-01   p_cons 4.928571e-03   p_joint 1.705238e-02

Joint ci ratio: 4.995054e-02	ci left: 2.655118e-02	ci right 2.791586e-02	k: 5990	n:220000
Cons ci ratio: 1.126157e-01	ci left: 5.168704e-03	ci right 5.789890e-03	k: 1204	n:220000
KS ci ratio: 1.345742e-02	ci left: 2.764552e-01	ci right 2.802052e-01	k: 61232	n:220000
DGKK   220000 perm   79 sec   (2784 perm/sec)   p_kst 2.783273e-01   p_cons 5.472727e-03   p_joint 2.722727e-02

Joint ci ratio: 4.808967e-02	ci left: 2.740262e-02	ci right 2.875714e-02	k: 6457	n:230000
Cons ci ratio: 1.096068e-01	ci left: 5.227195e-03	ci right 5.837542e-03	k: 1271	n:230000
KS ci ratio: 1.315995e-02	ci left: 2.765472e-01	ci right 2.802149e-01	k: 64027	n:230000
DGKK   230000 perm   84 sec   (2750 perm/sec)   p_kst 2.783783e-01   p_cons 5.526087e-03   p_joint 2.807391e-02

Joint ci ratio: 4.473016e-02	ci left: 3.031430e-02	ci right 3.170539e-02	k: 7441	n:240000
Cons ci ratio: 1.069071e-01	ci left: 5.272902e-03	ci right 5.872467e-03	k: 1336	n:240000
KS ci ratio: 1.311231e-02	ci left: 2.695634e-01	ci right 2.731254e-01	k: 65122	n:240000
DGKK   240000 perm   88 sec   (2718 perm/sec)   p_kst 2.713417e-01   p_cons 5.566667e-03   p_joint 3.100417e-02

Joint ci ratio: 4.444278e-02	ci left: 2.950886e-02	ci right 3.085406e-02	k: 7544	n:250000
Cons ci ratio: 1.046229e-01	ci left: 5.291746e-03	ci right 5.879806e-03	k: 1395	n:250000
KS ci ratio: 1.284797e-02	ci left: 2.695817e-01	ci right 2.730716e-01	k: 67831	n:250000
DGKK   250000 perm   93 sec   (2688 perm/sec)   p_kst 2.713240e-01   p_cons 5.580000e-03   p_joint 3.017600e-02

Joint ci ratio: 4.321146e-02	ci left: 3.001741e-02	ci right 3.134693e-02	k: 7976	n:260000
Cons ci ratio: 1.025855e-01	ci left: 5.298021e-03	ci right 5.874623e-03	k: 1451	n:260000
KS ci ratio: 1.260268e-02	ci left: 2.694841e-01	ci right 2.729056e-01	k: 70510	n:260000
DGKK   260000 perm   98 sec   (2648 perm/sec)   p_kst 2.711923e-01   p_cons 5.580769e-03   p_joint 3.067692e-02

Joint ci ratio: 4.203039e-02	ci left: 3.055473e-02	ci right 3.187017e-02	k: 8426	n:270000
Cons ci ratio: 1.012381e-01	ci left: 5.242553e-03	ci right 5.805178e-03	k: 1490	n:270000
KS ci ratio: 1.236431e-02	ci left: 2.696050e-01	ci right 2.729629e-01	k: 73246	n:270000
DGKK   270000 perm   103 sec   (2613 perm/sec)   p_kst 2.712815e-01   p_cons 5.518519e-03   p_joint 3.120741e-02

Joint ci ratio: 4.154147e-02	ci left: 3.018079e-02	ci right 3.146466e-02	k: 8629	n:280000
Cons ci ratio: 9.951817e-02	ci left: 5.236370e-03	ci right 5.788226e-03	k: 1542	n:280000
KS ci ratio: 1.214599e-02	ci left: 2.694897e-01	ci right 2.727865e-01	k: 75918	n:280000
DGKK   280000 perm   109 sec   (2580 perm/sec)   p_kst 2.711357e-01   p_cons 5.507143e-03   p_joint 3.081786e-02

Outputting figure to mutsig2_images.part000000000049/DGKK.5_3927_280000_0.27114_0.0055071_0.030818.png
                gene_name: DGKK
               theta_stop: 0.100 
                    nperm: 280000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.0055 
      ci_cons_bounds_left: 0.0052 
     ci_cons_bounds_right: 0.0058 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.031 

Current progress: 36 percent done.
DEFB119
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.350084e-02	ci left: 7.268385e-01	ci right 7.442241e-01	k: 7356	n:10000
Cons ci ratio: 1.037541e-02	ci left: 9.295765e-01	ci right 9.393685e-01	k: 9346	n:10000
KS ci ratio: 4.539235e-02	ci left: 4.173773e-01	ci right 4.368652e-01	k: 4271	n:10000
DEFB119   10000 perm   2 sec   (6606 perm/sec)   p_kst 4.271000e-01   p_cons 9.346000e-01   p_joint 7.356000e-01

Outputting figure to mutsig2_images.part000000000049/DEFB119.4_517_10000_0.4271_0.9346_0.7356.png
                gene_name: DEFB119
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 38 percent done.
DENND1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.705039e-02	ci left: 5.182587e-01	ci right 5.379249e-01	k: 5281	n:10000
Cons ci ratio: 5.605823e-02	ci left: 3.190972e-01	ci right 3.376029e-01	k: 3283	n:10000
KS ci ratio: 5.506921e-02	ci left: 3.269398e-01	ci right 3.455557e-01	k: 3362	n:10000
DENND1C   10000 perm   2 sec   (5027 perm/sec)   p_kst 3.362000e-01   p_cons 3.283000e-01   p_joint 5.281000e-01

Outputting figure to mutsig2_images.part000000000049/DENND1C.4_2498_10000_0.3362_0.3283_0.5281.png
                gene_name: DENND1C
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 40 percent done.
DEPDC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.849424e-02	ci left: 3.855000e-01	ci right 4.047611e-01	k: 3951	n:10000
Cons ci ratio: 3.139339e-02	ci left: 5.995561e-01	ci right 6.187803e-01	k: 6092	n:10000
KS ci ratio: 8.138550e-02	ci left: 1.805807e-01	ci right 1.960013e-01	k: 1882	n:10000
DEPDC7   10000 perm   2 sec   (5805 perm/sec)   p_kst 1.882000e-01   p_cons 6.092000e-01   p_joint 3.951000e-01

Outputting figure to mutsig2_images.part000000000049/DEPDC7.4_1622_10000_0.1882_0.6092_0.3951.png
                gene_name: DEPDC7
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 43 percent done.
DGAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.271458e-02	ci left: 5.796832e-01	ci right 5.990647e-01	k: 5894	n:10000
Cons ci ratio: 4.911865e-02	ci left: 3.794282e-01	ci right 3.986365e-01	k: 3890	n:10000
KS ci ratio: 3.881972e-02	ci left: 4.949504e-01	ci right 5.146468e-01	k: 5048	n:10000
DGAT2   10000 perm   2 sec   (5509 perm/sec)   p_kst 5.048000e-01   p_cons 3.890000e-01   p_joint 5.894000e-01

Outputting figure to mutsig2_images.part000000000049/DGAT2.4_1199_10000_0.5048_0.389_0.5894.png
                gene_name: DGAT2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 45 percent done.
DEF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.075105e-02	ci left: 6.093982e-01	ci right 6.285324e-01	k: 6190	n:10000
KS ci ratio: 1.974146e-02	ci left: 7.896903e-01	ci right 8.055359e-01	k: 7977	n:10000
DEF6   10000 perm   2 sec   (5485 perm/sec)   p_kst 7.977000e-01   p_cons 6.190000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000049/DEF6.3_1940_10000_0.7977_0.619_1.png
                gene_name: DEF6
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
DENND1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.476599e-02	ci left: 7.057380e-01	ci right 7.235368e-01	k: 7147	n:10000
Cons ci ratio: 3.318302e-02	ci left: 5.727616e-01	ci right 5.921903e-01	k: 5825	n:10000
KS ci ratio: 3.716947e-02	ci left: 5.166574e-01	ci right 5.363271e-01	k: 5265	n:10000
DENND1B   10000 perm   2 sec   (4076 perm/sec)   p_kst 5.265000e-01   p_cons 5.825000e-01   p_joint 7.147000e-01

Outputting figure to mutsig2_images.part000000000049/DENND1B.3_2461_10000_0.5265_0.5825_0.7147.png
                gene_name: DENND1B
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 50 percent done.
DENND2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.602876e-01	ci left: 5.549202e-03	ci right 8.947365e-03	k: 71	n:10000
Cons ci ratio: 3.442409e-01	ci left: 1.059811e-02	ci right 1.509234e-02	k: 127	n:10000
KS ci ratio: 1.827128e-01	ci left: 3.996794e-02	ci right 4.810038e-02	k: 439	n:10000
DENND2D   10000 perm   2 sec   (5986 perm/sec)   p_kst 4.390000e-02   p_cons 1.270000e-02   p_joint 7.100000e-03

Joint ci ratio: 5.011261e-01	ci left: 2.290073e-03	ci right 3.859930e-03	k: 60	n:20000
Cons ci ratio: 2.463622e-01	ci left: 1.095946e-02	ci right 1.408466e-02	k: 249	n:20000
KS ci ratio: 1.277643e-01	ci left: 4.207135e-02	ci right 4.786188e-02	k: 898	n:20000
DENND2D   20000 perm   4 sec   (5081 perm/sec)   p_kst 4.490000e-02   p_cons 1.245000e-02   p_joint 3.000000e-03

Joint ci ratio: 5.013857e-01	ci left: 1.526547e-03	ci right 2.573657e-03	k: 60	n:30000
Cons ci ratio: 1.959307e-01	ci left: 1.187572e-02	ci right 1.448649e-02	k: 394	n:30000
KS ci ratio: 1.047066e-01	ci left: 4.229167e-02	ci right 4.699703e-02	k: 1338	n:30000
DENND2D   30000 perm   6 sec   (4798 perm/sec)   p_kst 4.460000e-02   p_cons 1.313333e-02   p_joint 2.000000e-03

Joint ci ratio: 3.173454e-01	ci left: 3.197791e-03	ci right 4.425976e-03	k: 151	n:40000
Cons ci ratio: 1.681779e-01	ci left: 1.227219e-02	ci right 1.454927e-02	k: 535	n:40000
KS ci ratio: 9.058164e-02	ci left: 4.269554e-02	ci right 4.677089e-02	k: 1788	n:40000
DENND2D   40000 perm   9 sec   (4611 perm/sec)   p_kst 4.470000e-02   p_cons 1.337500e-02   p_joint 3.775000e-03

Joint ci ratio: 1.426395e-01	ci left: 1.381771e-02	ci right 1.595915e-02	k: 743	n:50000
Cons ci ratio: 1.501962e-01	ci left: 1.242976e-02	ci right 1.446731e-02	k: 671	n:50000
KS ci ratio: 8.100465e-02	ci left: 4.292481e-02	ci right 4.656829e-02	k: 2236	n:50000
DENND2D   50000 perm   11 sec   (4509 perm/sec)   p_kst 4.472000e-02   p_cons 1.342000e-02   p_joint 1.486000e-02

Joint ci ratio: 1.439002e-01	ci left: 1.133693e-02	ci right 1.311072e-02	k: 732	n:60000
Cons ci ratio: 1.374907e-01	ci left: 1.244694e-02	ci right 1.430057e-02	k: 801	n:60000
KS ci ratio: 7.474320e-02	ci left: 4.219263e-02	ci right 4.548501e-02	k: 2629	n:60000
DENND2D   60000 perm   14 sec   (4234 perm/sec)   p_kst 4.381667e-02   p_cons 1.335000e-02   p_joint 1.220000e-02

Joint ci ratio: 1.544843e-01	ci left: 8.409812e-03	ci right 9.831326e-03	k: 637	n:70000
Cons ci ratio: 1.283856e-01	ci left: 1.229844e-02	ci right 1.399941e-02	k: 919	n:70000
KS ci ratio: 6.939222e-02	ci left: 4.208502e-02	ci right 4.512439e-02	k: 3051	n:70000
DENND2D   70000 perm   18 sec   (3981 perm/sec)   p_kst 4.358571e-02   p_cons 1.312857e-02   p_joint 9.100000e-03

Joint ci ratio: 1.217127e-01	ci left: 1.202038e-02	ci right 1.359025e-02	k: 1023	n:80000
Cons ci ratio: 1.184732e-01	ci left: 1.269961e-02	ci right 1.431095e-02	k: 1079	n:80000
KS ci ratio: 6.287380e-02	ci left: 4.487872e-02	ci right 4.780429e-02	k: 3706	n:80000
DENND2D   80000 perm   20 sec   (3949 perm/sec)   p_kst 4.632500e-02   p_cons 1.348750e-02   p_joint 1.278750e-02

Joint ci ratio: 9.606026e-02	ci left: 1.729328e-02	ci right 1.904908e-02	k: 1634	n:90000
Cons ci ratio: 1.128327e-01	ci left: 1.248613e-02	ci right 1.398993e-02	k: 1190	n:90000
KS ci ratio: 5.947550e-02	ci left: 4.467334e-02	ci right 4.742268e-02	k: 4143	n:90000
DENND2D   90000 perm   23 sec   (3904 perm/sec)   p_kst 4.603333e-02   p_cons 1.322222e-02   p_joint 1.815556e-02

Joint ci ratio: 1.287834e-01	ci left: 8.588481e-03	ci right 9.780248e-03	k: 917	n:100000
Cons ci ratio: 9.834280e-02	ci left: 1.487028e-02	ci right 1.641799e-02	k: 1563	n:100000
KS ci ratio: 5.646487e-02	ci left: 4.468021e-02	ci right 4.728621e-02	k: 4597	n:100000
DENND2D   100000 perm   26 sec   (3860 perm/sec)   p_kst 4.597000e-02   p_cons 1.563000e-02   p_joint 9.170000e-03

Joint ci ratio: 1.373115e-01	ci left: 6.849317e-03	ci right 7.867825e-03	k: 808	n:110000
Cons ci ratio: 9.427971e-02	ci left: 1.474273e-02	ci right 1.621026e-02	k: 1701	n:110000
KS ci ratio: 5.374145e-02	ci left: 4.489512e-02	ci right 4.738342e-02	k: 5074	n:110000
DENND2D   110000 perm   29 sec   (3817 perm/sec)   p_kst 4.612727e-02   p_cons 1.546364e-02   p_joint 7.345455e-03

Joint ci ratio: 1.344561e-01	ci left: 6.560225e-03	ci right 7.513832e-03	k: 843	n:120000
Cons ci ratio: 9.043253e-02	ci left: 1.471901e-02	ci right 1.612122e-02	k: 1849	n:120000
KS ci ratio: 5.131940e-02	ci left: 4.517551e-02	ci right 4.756315e-02	k: 5563	n:120000
DENND2D   120000 perm   32 sec   (3769 perm/sec)   p_kst 4.635833e-02   p_cons 1.540833e-02   p_joint 7.025000e-03

Joint ci ratio: 1.191749e-01	ci left: 7.761710e-03	ci right 8.752720e-03	k: 1072	n:130000
Cons ci ratio: 8.742167e-02	ci left: 1.456449e-02	ci right 1.590342e-02	k: 1979	n:130000
KS ci ratio: 4.924473e-02	ci left: 4.533125e-02	ci right 4.762750e-02	k: 6041	n:130000
DENND2D   130000 perm   35 sec   (3709 perm/sec)   p_kst 4.646923e-02   p_cons 1.522308e-02   p_joint 8.246154e-03

Joint ci ratio: 1.149672e-01	ci left: 7.761999e-03	ci right 8.715680e-03	k: 1152	n:140000
Cons ci ratio: 8.438861e-02	ci left: 1.453762e-02	ci right 1.582543e-02	k: 2124	n:140000
KS ci ratio: 4.739909e-02	ci left: 4.547346e-02	ci right 4.768822e-02	k: 6520	n:140000
DENND2D   140000 perm   38 sec   (3656 perm/sec)   p_kst 4.657143e-02   p_cons 1.517143e-02   p_joint 8.228571e-03

Joint ci ratio: 1.207812e-01	ci left: 6.551968e-03	ci right 7.400591e-03	k: 1045	n:150000
Cons ci ratio: 8.137823e-02	ci left: 1.461303e-02	ci right 1.585915e-02	k: 2284	n:150000
KS ci ratio: 4.570545e-02	ci left: 4.567724e-02	ci right 4.782033e-02	k: 7011	n:150000
DENND2D   150000 perm   42 sec   (3607 perm/sec)   p_kst 4.674000e-02   p_cons 1.522667e-02   p_joint 6.966667e-03

Joint ci ratio: 1.243891e-01	ci left: 5.784882e-03	ci right 6.558177e-03	k: 986	n:160000
Cons ci ratio: 7.863595e-02	ci left: 1.469198e-02	ci right 1.590068e-02	k: 2446	n:160000
KS ci ratio: 4.422456e-02	ci left: 4.577018e-02	ci right 4.784628e-02	k: 7488	n:160000
DENND2D   160000 perm   45 sec   (3560 perm/sec)   p_kst 4.680000e-02   p_cons 1.528750e-02   p_joint 6.162500e-03

Joint ci ratio: 1.013472e-01	ci left: 8.281202e-03	ci right 9.170968e-03	k: 1482	n:170000
Cons ci ratio: 7.615341e-02	ci left: 1.476227e-02	ci right 1.593670e-02	k: 2608	n:170000
KS ci ratio: 4.293262e-02	ci left: 4.574256e-02	ci right 4.775529e-02	k: 7946	n:170000
DENND2D   170000 perm   48 sec   (3513 perm/sec)   p_kst 4.674118e-02   p_cons 1.534118e-02   p_joint 8.717647e-03

Joint ci ratio: 1.164536e-01	ci left: 5.891118e-03	ci right 6.624921e-03	k: 1125	n:180000
Cons ci ratio: 7.416436e-02	ci left: 1.471619e-02	ci right 1.585506e-02	k: 2750	n:180000
KS ci ratio: 4.179202e-02	ci left: 4.562529e-02	ci right 4.757823e-02	k: 8387	n:180000
DENND2D   180000 perm   52 sec   (3465 perm/sec)   p_kst 4.659444e-02   p_cons 1.527778e-02   p_joint 6.250000e-03

Joint ci ratio: 9.530009e-02	ci left: 8.405485e-03	ci right 9.251709e-03	k: 1676	n:190000
Cons ci ratio: 7.218419e-02	ci left: 1.473218e-02	ci right 1.584057e-02	k: 2903	n:190000
KS ci ratio: 4.113756e-02	ci left: 4.467148e-02	ci right 4.655294e-02	k: 8665	n:190000
DENND2D   190000 perm   56 sec   (3411 perm/sec)   p_kst 4.560526e-02   p_cons 1.527895e-02   p_joint 8.821053e-03

Outputting figure to mutsig2_images.part000000000049/DENND2D.3_1464_190000_0.045605_0.015279_0.0088211.png
                gene_name: DENND2D
               theta_stop: 0.095 
                    nperm: 190000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.0088 
     ci_joint_bounds_left: 0.0084 
    ci_joint_bounds_right: 0.0093 

Current progress: 52 percent done.
DEPDC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.185224e-02	ci left: 9.107001e-01	ci right 9.216561e-01	k: 9163	n:10000
KS ci ratio: 2.745299e-02	ci left: 6.615916e-01	ci right 6.801087e-01	k: 6709	n:10000
DEPDC6   10000 perm   2 sec   (5559 perm/sec)   p_kst 6.709000e-01   p_cons 9.163000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000049/DEPDC6.3_1266_10000_0.6709_0.9163_1.png
                gene_name: DEPDC6
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
DFFA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.096562e-02	ci left: 3.621174e-01	ci right 3.811575e-01	k: 3716	n:10000
Cons ci ratio: 3.478503e-02	ci left: 5.496035e-01	ci right 5.691619e-01	k: 5594	n:10000
KS ci ratio: 7.834908e-02	ci left: 1.922969e-01	ci right 2.080782e-01	k: 2001	n:10000
DFFA   10000 perm   2 sec   (6079 perm/sec)   p_kst 2.001000e-01   p_cons 5.594000e-01   p_joint 3.716000e-01

Outputting figure to mutsig2_images.part000000000049/DFFA.3_1044_10000_0.2001_0.5594_0.3716.png
                gene_name: DFFA
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 57 percent done.
DGCR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.095056e-02	ci left: 2.835954e-01	ci right 3.015256e-01	k: 2925	n:10000
Cons ci ratio: 7.810527e-02	ci left: 1.932819e-01	ci right 2.090925e-01	k: 2011	n:10000
KS ci ratio: 7.208946e-02	ci left: 2.199059e-01	ci right 2.364527e-01	k: 2281	n:10000
DGCR8   10000 perm   2 sec   (5339 perm/sec)   p_kst 2.281000e-01   p_cons 2.011000e-01   p_joint 2.925000e-01

Outputting figure to mutsig2_images.part000000000049/DGCR8.3_2374_10000_0.2281_0.2011_0.2925.png
                gene_name: DGCR8
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 60 percent done.
DGKE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.190996e-02	ci left: 5.917254e-01	ci right 6.110155e-01	k: 6014	n:10000
Cons ci ratio: 7.844707e-02	ci left: 1.919029e-01	ci right 2.076724e-01	k: 1997	n:10000
KS ci ratio: 1.475807e-02	ci left: 8.692784e-01	ci right 8.823018e-01	k: 8759	n:10000
DGKE   10000 perm   2 sec   (5630 perm/sec)   p_kst 8.759000e-01   p_cons 1.997000e-01   p_joint 6.014000e-01

Outputting figure to mutsig2_images.part000000000049/DGKE.3_1748_10000_0.8759_0.1997_0.6014.png
                gene_name: DGKE
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 62 percent done.
DGKG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.937534e-02	ci left: 2.335329e-01	ci right 2.504177e-01	k: 2419	n:10000
Cons ci ratio: 4.094976e-02	ci left: 4.682672e-01	ci right 4.879456e-01	k: 4781	n:10000
KS ci ratio: 8.869635e-02	ci left: 1.561040e-01	ci right 1.706926e-01	k: 1633	n:10000
DGKG   10000 perm   2 sec   (5130 perm/sec)   p_kst 1.633000e-01   p_cons 4.781000e-01   p_joint 2.419000e-01

Outputting figure to mutsig2_images.part000000000049/DGKG.3_2472_10000_0.1633_0.4781_0.2419.png
                gene_name: DGKG
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 64 percent done.
DGKZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.455362e-02	ci left: 7.092699e-01	ci right 7.270028e-01	k: 7182	n:10000
KS ci ratio: 1.035845e-02	ci left: 9.297834e-01	ci right 9.395616e-01	k: 9348	n:10000
DGKZ   10000 perm   2 sec   (4779 perm/sec)   p_kst 9.348000e-01   p_cons 7.182000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000049/DGKZ.3_3925_10000_0.9348_0.7182_1.png
                gene_name: DGKZ
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
DEFB112
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.159900e-03	ci left: 9.641510e-01	ci right 9.711731e-01	k: 9678	n:10000
Cons ci ratio: 2.079455e-02	ci left: 7.721552e-01	ci right 7.884812e-01	k: 7804	n:10000
KS ci ratio: 2.329554e-02	ci left: 7.302734e-01	ci right 7.475872e-01	k: 7390	n:10000
DEFB112   10000 perm   1 sec   (6936 perm/sec)   p_kst 7.390000e-01   p_cons 7.804000e-01   p_joint 9.678000e-01

Outputting figure to mutsig2_images.part000000000049/DEFB112.2_350_10000_0.739_0.7804_0.9678.png
                gene_name: DEFB112
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 69 percent done.
DEFB113
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.519441e-01	ci left: 5.764078e-02	ci right 6.721608e-02	k: 623	n:10000
Cons ci ratio: 1.519441e-01	ci left: 5.764078e-02	ci right 6.721608e-02	k: 623	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
DEFB113   10000 perm   1 sec   (7059 perm/sec)   p_kst 1   p_cons 6.230000e-02   p_joint 6.230000e-02

Joint ci ratio: 5.747382e-02	ci left: 1.832485e-01	ci right 1.941422e-01	k: 3773	n:20000
Cons ci ratio: 1.068959e-01	ci left: 5.962273e-02	ci right 6.640500e-02	k: 1259	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
DEFB113   20000 perm   3 sec   (6083 perm/sec)   p_kst 1   p_cons 6.295000e-02   p_joint 1.886500e-01

Joint ci ratio: 4.688146e-02	ci left: 1.845503e-01	ci right 1.934433e-01	k: 5669	n:30000
Cons ci ratio: 8.728080e-02	ci left: 6.024376e-02	ci right 6.577457e-02	k: 1889	n:30000
KS ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
DEFB113   30000 perm   5 sec   (5773 perm/sec)   p_kst 1   p_cons 6.296667e-02   p_joint 1.889667e-01

Outputting figure to mutsig2_images.part000000000049/DEFB113.2_257_30000_1_0.062967_0.18897.png
                gene_name: DEFB113
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 71 percent done.
DEFB116
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.428697e-02	ci left: 7.137110e-01	ci right 7.313592e-01	k: 7226	n:10000
KS ci ratio: 1.707822e-02	ci left: 8.331748e-01	ci right 8.476263e-01	k: 8405	n:10000
DEFB116   10000 perm   1 sec   (6836 perm/sec)   p_kst 8.405000e-01   p_cons 7.226000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000049/DEFB116.2_317_10000_0.8405_0.7226_1.png
                gene_name: DEFB116
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
DEFB129
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.754621e-02	ci left: 1.596393e-01	ci right 1.743552e-01	k: 1669	n:10000
Cons ci ratio: 1.165621e-01	ci left: 9.564778e-02	ci right 1.075854e-01	k: 1015	n:10000
KS ci ratio: 6.639033e-02	ci left: 2.498415e-01	ci right 2.670994e-01	k: 2584	n:10000
DEFB129   10000 perm   1 sec   (7083 perm/sec)   p_kst 2.584000e-01   p_cons 1.015000e-01   p_joint 1.669000e-01

Joint ci ratio: 9.406027e-02	ci left: 7.612963e-02	ci right 8.369304e-02	k: 1597	n:20000
Cons ci ratio: 8.237831e-02	ci left: 9.749509e-02	ci right 1.059211e-01	k: 2033	n:20000
KS ci ratio: 4.686594e-02	ci left: 2.530382e-01	ci right 2.652319e-01	k: 5182	n:20000
DEFB129   20000 perm   3 sec   (6135 perm/sec)   p_kst 2.591000e-01   p_cons 1.016500e-01   p_joint 7.985000e-02

Outputting figure to mutsig2_images.part000000000049/DEFB129.2_560_20000_0.2591_0.10165_0.07985.png
                gene_name: DEFB129
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.084 

Current progress: 76 percent done.
DEFB135
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.320499e-02	ci left: 7.317890e-01	ci right 7.490707e-01	k: 7405	n:10000
KS ci ratio: 2.585051e-02	ci left: 6.877856e-01	ci right 7.058996e-01	k: 6969	n:10000
DEFB135   10000 perm   1 sec   (6983 perm/sec)   p_kst 6.969000e-01   p_cons 7.405000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000049/DEFB135.2_242_10000_0.6969_0.7405_1.png
                gene_name: DEFB135
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
DEGS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.481229e-02	ci left: 8.684609e-01	ci right 8.815198e-01	k: 8751	n:10000
Cons ci ratio: 3.496175e-02	ci left: 5.470984e-01	ci right 5.666684e-01	k: 5569	n:10000
KS ci ratio: 1.057999e-01	ci left: 1.142783e-01	ci right 1.271436e-01	k: 1206	n:10000
DEGS1   10000 perm   2 sec   (6475 perm/sec)   p_kst 1.206000e-01   p_cons 5.569000e-01   p_joint 8.751000e-01

Joint ci ratio: 5.803362e-02	ci left: 1.803317e-01	ci right 1.911598e-01	k: 3714	n:20000
Cons ci ratio: 2.460826e-02	ci left: 5.522860e-01	ci right 5.660968e-01	k: 11184	n:20000
KS ci ratio: 7.481318e-02	ci left: 1.161662e-01	ci right 1.252444e-01	k: 2413	n:20000
DEGS1   20000 perm   4 sec   (5645 perm/sec)   p_kst 1.206500e-01   p_cons 5.592000e-01   p_joint 1.857000e-01

Outputting figure to mutsig2_images.part000000000049/DEGS1.2_984_20000_0.12065_0.5592_0.1857.png
                gene_name: DEGS1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 81 percent done.
DEM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.561827e-02	ci left: 6.916168e-01	ci right 7.096662e-01	k: 7007	n:10000
Cons ci ratio: 3.958005e-02	ci left: 4.852533e-01	ci right 5.049496e-01	k: 4951	n:10000
KS ci ratio: 8.567447e-02	ci left: 1.656325e-01	ci right 1.805584e-01	k: 1730	n:10000
DEM1   10000 perm   2 sec   (6409 perm/sec)   p_kst 1.730000e-01   p_cons 4.951000e-01   p_joint 7.007000e-01

Outputting figure to mutsig2_images.part000000000049/DEM1.2_1126_10000_0.173_0.4951_0.7007.png
                gene_name: DEM1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 83 percent done.
DEPDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.965125e-02	ci left: 2.925144e-01	ci right 3.106013e-01	k: 3015	n:10000
Cons ci ratio: 6.276574e-02	ci left: 2.717099e-01	ci right 2.894181e-01	k: 2805	n:10000
KS ci ratio: 1.578567e-02	ci left: 8.535544e-01	ci right 8.672349e-01	k: 8605	n:10000
DEPDC1   10000 perm   2 sec   (5591 perm/sec)   p_kst 8.605000e-01   p_cons 2.805000e-01   p_joint 3.015000e-01

Outputting figure to mutsig2_images.part000000000049/DEPDC1.2_2484_10000_0.8605_0.2805_0.3015.png
                gene_name: DEPDC1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 86 percent done.
DEPDC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.391837e-02	ci left: 5.620320e-01	ci right 5.815262e-01	k: 5718	n:10000
Cons ci ratio: 5.141594e-02	ci left: 3.580403e-01	ci right 3.770370e-01	k: 3675	n:10000
KS ci ratio: 1.012259e-01	ci left: 1.237605e-01	ci right 1.370557e-01	k: 1303	n:10000
DEPDC4   10000 perm   2 sec   (6514 perm/sec)   p_kst 1.303000e-01   p_cons 3.675000e-01   p_joint 5.718000e-01

Joint ci ratio: 3.319301e-02	ci left: 4.039700e-01	ci right 4.176559e-01	k: 8216	n:20000
Cons ci ratio: 3.499264e-02	ci left: 3.787467e-01	ci right 3.922866e-01	k: 7710	n:20000
KS ci ratio: 7.192808e-02	ci left: 1.246298e-01	ci right 1.339783e-01	k: 2585	n:20000
DEPDC4   20000 perm   4 sec   (5653 perm/sec)   p_kst 1.292500e-01   p_cons 3.855000e-01   p_joint 4.108000e-01

Outputting figure to mutsig2_images.part000000000049/DEPDC4.2_905_20000_0.12925_0.3855_0.4108.png
                gene_name: DEPDC4
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 88 percent done.
DERA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.635134e-02	ci left: 2.005737e-01	ci right 2.165964e-01	k: 2085	n:10000
Cons ci ratio: 3.113034e-02	ci left: 6.035728e-01	ci right 6.227612e-01	k: 6132	n:10000
KS ci ratio: 6.540060e-02	ci left: 2.555781e-01	ci right 2.729595e-01	k: 2642	n:10000
DERA   10000 perm   2 sec   (6458 perm/sec)   p_kst 2.642000e-01   p_cons 6.132000e-01   p_joint 2.085000e-01

Outputting figure to mutsig2_images.part000000000049/DERA.2_993_10000_0.2642_0.6132_0.2085.png
                gene_name: DERA
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 90 percent done.
DERL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.961459e-02	ci left: 6.270843e-01	ci right 6.460361e-01	k: 6366	n:10000
Cons ci ratio: 2.819591e-02	ci left: 6.496136e-01	ci right 6.682937e-01	k: 6590	n:10000
KS ci ratio: 6.480061e-02	ci left: 2.591396e-01	ci right 2.765958e-01	k: 2678	n:10000
DERL2   10000 perm   1 sec   (6717 perm/sec)   p_kst 2.678000e-01   p_cons 6.590000e-01   p_joint 6.366000e-01

Outputting figure to mutsig2_images.part000000000049/DERL2.2_748_10000_0.2678_0.659_0.6366.png
                gene_name: DERL2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 93 percent done.
DFFB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.120469e-03	ci left: 9.920588e-01	ci right 9.952433e-01	k: 9938	n:10000
Cons ci ratio: 1.716091e-02	ci left: 8.318516e-01	ci right 8.463503e-01	k: 8392	n:10000
KS ci ratio: 1.576595e-02	ci left: 8.538604e-01	ci right 8.675287e-01	k: 8608	n:10000
DFFB   10000 perm   2 sec   (6458 perm/sec)   p_kst 8.608000e-01   p_cons 8.392000e-01   p_joint 9.938000e-01

Outputting figure to mutsig2_images.part000000000049/DFFB.2_1045_10000_0.8608_0.8392_0.9938.png
                gene_name: DFFB
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 95 percent done.
DFNA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.652740e-02	ci left: 8.419327e-01	ci right 8.560633e-01	k: 8491	n:10000
KS ci ratio: 4.981450e-03	ci left: 9.815599e-01	ci right 9.865523e-01	k: 9842	n:10000
DFNA5   10000 perm   2 sec   (5720 perm/sec)   p_kst 9.842000e-01   p_cons 8.491000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000049/DFNA5.2_1527_10000_0.9842_0.8491_1.png
                gene_name: DFNA5
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
DGCR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.022950e-02	ci left: 7.815789e-01	ci right 7.976520e-01	k: 7897	n:10000
Cons ci ratio: 4.056613e-02	ci left: 4.729622e-01	ci right 4.926478e-01	k: 4828	n:10000
KS ci ratio: 6.585772e-02	ci left: 2.529073e-01	ci right 2.702318e-01	k: 2615	n:10000
DGCR2   10000 perm   2 sec   (5799 perm/sec)   p_kst 2.615000e-01   p_cons 4.828000e-01   p_joint 7.897000e-01

Outputting figure to mutsig2_images.part000000000049/DGCR2.2_1693_10000_0.2615_0.4828_0.7897.png
                gene_name: DGCR2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000049
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 49 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1645>
Subject: Job 9893911: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1645>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000050> was used as the working directory.
Started at Sat Oct  6 00:05:04 2012
Results reported at Sat Oct  6 01:55:04 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000050.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000050.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 50  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000050.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   6661.81 sec.
    Max Memory :      3577 MB
    Max Swap   :      6032 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
50
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 50
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 50: processing genes 4418 - 4508
Calculating significance of each gene.
Using projection method.
4418	DHCR24	7.566268e-01
4419	DHCR7	6.949133e-01
4420	DHDDS	7.761365e-01
4421	DHDH	8.319861e-01
4422	DHDPSL	1
4423	DHFR	4.623379e-01
4424	DHFRL1	3.257317e-01
4425	DHH	8.083825e-01
4426	DHODH	1.257521e-01
4427	DHPS	7.477042e-01
4428	DHRS1	6.385283e-01
4429	DHRS11	1
4430	DHRS12	7.905132e-01
4431	DHRS13	1
4432	DHRS2	2.648188e-01
4433	DHRS3	6.084096e-01
4434	DHRS4	1
4435	DHRS4L1	5.580922e-01
4436	DHRS4L2	1
4437	DHRS7	1
4438	DHRS7B	1
4439	DHRS7C	5.573185e-01
4440	DHRS9	6.302789e-01
4441	DHTKD1	1.325961e-01
4442	DHX15	9.272518e-01
4443	DHX16	2.630626e-01
4444	DHX29	4.455537e-01
4445	DHX30	5.043048e-01
4446	DHX32	6.775702e-01
4447	DHX33	9.911377e-01
4448	DHX34	1
4449	DHX35	4.541654e-01
4450	DHX36	8.277573e-01
4451	DHX37	6.285850e-01
4452	DHX38	2.527532e-01
4453	DHX40	6.306779e-01
In gene DHX57 the following bins exceed PROBCAP:
    COAD-AA-A00W	categ 6	N = 4253    n = 1	mu =   1.38e-07
4454	DHX57	4.558959e-02
4455	DHX58	6.542761e-01
4456	DHX8	7.631997e-01
4457	DHX9	8.952158e-01
4458	DIABLO	5.568847e-01
4459	DIAPH1	9.918311e-01
4460	DIAPH2	2.228275e-02
4461	DIAPH3	6.126122e-01
4462	DICER1	4.967897e-01
4463	DIDO1	8.766237e-01
4464	DIMT1L	1
4465	DIO1	7.550979e-01
4466	DIO2	5.336132e-01
4467	DIO3	6.972109e-01
4468	DIP2A	7.563678e-01
4469	DIP2B	1.367674e-01
4470	DIP2C	6.481971e-01
4471	DIRAS1	1
4472	DIRAS2	4.886176e-03
4473	DIRAS3	5.420895e-01
4474	DIRC1	8.507282e-02
4475	DIRC2	8.646533e-01
4476	DIS3	6.716175e-02
4477	DIS3L	1.484286e-01
4478	DIS3L2	8.888024e-01
4479	DISC1	2.975079e-01
4480	DISP1	8.275150e-02
4481	DISP2	5.129779e-01
4482	DIXDC1	8.687826e-01
4483	DKC1	7.405184e-01
4484	DKFZp761E198	1
4485	DKK1	1.103176e-02
4486	DKK2	2.330312e-03
4487	DKK3	3.987664e-01
4488	DKK4	1.045821e-04
4489	DKKL1	1
4490	DLAT	5.881100e-01
4491	DLC1	1.437237e-04
4492	DLD	7.851867e-01
4493	DLEC1	9.856747e-01
4494	DLEU7	1
4495	DLG1	6.792144e-01
4496	DLG2	3.561354e-02
4497	DLG3	2.643786e-01
4498	DLG4	9.819421e-01
4499	DLG5	9.634923e-01
4500	DLGAP1	9.346022e-01
4501	DLGAP2	6.238401e-01
4502	DLGAP3	9.207716e-01
4503	DLGAP4	9.862166e-01
4504	DLGAP5	7.008528e-01
4505	DLK1	4.490317e-01
4506	DLK2	5.187654e-01
4507	DLL1	6.960298e-01
4508	DLL3	6.529700e-01
Done

Running MutSig 2:
Scatter job 50: processing genes 4418 - 4508
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DLC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.302394e-02	ci left: 7.348207e-01	ci right 7.520373e-01	k: 7435	n:10000
KS ci ratio: 3.365594e-02	ci left: 5.658420e-01	ci right 5.853140e-01	k: 5756	n:10000
DLC1   10000 perm   3 sec   (3684 perm/sec)   p_kst 5.756000e-01   p_cons 7.435000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DLC1.29_4740_10000_0.5756_0.7435_1.png
                gene_name: DLC1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
DISP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.949312e-02	ci left: 6.289944e-01	ci right 6.479249e-01	k: 6385	n:10000
Cons ci ratio: 3.638676e-02	ci left: 5.272676e-01	ci right 5.469108e-01	k: 5371	n:10000
KS ci ratio: 4.413521e-02	ci left: 4.311373e-01	ci right 4.506972e-01	k: 4409	n:10000
DISP1   10000 perm   2 sec   (4013 perm/sec)   p_kst 4.409000e-01   p_cons 5.371000e-01   p_joint 6.385000e-01

Outputting figure to mutsig2_images.part000000000050/DISP1.15_4603_10000_0.4409_0.5371_0.6385.png
                gene_name: DISP1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 3 percent done.
DHX57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.174386e-02	ci left: 5.942350e-01	ci right 6.135045e-01	k: 6039	n:10000
Cons ci ratio: 6.161973e-02	ci left: 2.791374e-01	ci right 2.969862e-01	k: 2880	n:10000
KS ci ratio: 2.942289e-02	ci left: 6.301003e-01	ci right 6.490183e-01	k: 6396	n:10000
DHX57   10000 perm   2 sec   (4236 perm/sec)   p_kst 6.396000e-01   p_cons 2.880000e-01   p_joint 6.039000e-01

Outputting figure to mutsig2_images.part000000000050/DHX57.14_4253_10000_0.6396_0.288_0.6039.png
                gene_name: DHX57
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 5 percent done.
DIAPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.016804e-01	ci left: 3.271977e-02	ci right 4.015343e-02	k: 363	n:10000
Cons ci ratio: 4.962703e-01	ci left: 4.669135e-03	ci right 7.828899e-03	k: 61	n:10000
KS ci ratio: 1.311400e-02	ci left: 8.933376e-01	ci right 9.052286e-01	k: 8994	n:10000
DIAPH2   10000 perm   2 sec   (4862 perm/sec)   p_kst 8.994000e-01   p_cons 6.100000e-03   p_joint 3.630000e-02

Joint ci ratio: 1.136954e-01	ci left: 5.290189e-02	ci right 5.932793e-02	k: 1121	n:20000
Cons ci ratio: 3.567614e-01	ci left: 4.931479e-03	ci right 7.115892e-03	k: 119	n:20000
KS ci ratio: 9.233189e-03	ci left: 8.959117e-01	ci right 9.042716e-01	k: 18003	n:20000
DIAPH2   20000 perm   5 sec   (4432 perm/sec)   p_kst 9.001500e-01   p_cons 5.950000e-03   p_joint 5.605000e-02

Joint ci ratio: 9.162750e-02	ci left: 5.485939e-02	ci right 6.016004e-02	k: 1724	n:30000
Cons ci ratio: 2.865312e-01	ci left: 5.312224e-03	ci right 7.118745e-03	k: 185	n:30000
KS ci ratio: 7.958599e-03	ci left: 8.863711e-01	ci right 8.934865e-01	k: 26699	n:30000
DIAPH2   30000 perm   7 sec   (4241 perm/sec)   p_kst 8.899667e-01   p_cons 6.166667e-03   p_joint 5.746667e-02

Joint ci ratio: 8.545595e-02	ci left: 4.783542e-02	ci right 5.213021e-02	k: 1998	n:40000
Cons ci ratio: 2.451775e-01	ci left: 5.571602e-03	ci right 7.151349e-03	k: 253	n:40000
KS ci ratio: 6.895431e-03	ci left: 8.867664e-01	ci right 8.929269e-01	k: 35595	n:40000
DIAPH2   40000 perm   10 sec   (4132 perm/sec)   p_kst 8.898750e-01   p_cons 6.325000e-03   p_joint 4.995000e-02

Joint ci ratio: 8.441977e-02	ci left: 3.959214e-02	ci right 4.310137e-02	k: 2066	n:50000
Cons ci ratio: 2.241407e-01	ci left: 5.398537e-03	ci right 6.779752e-03	k: 303	n:50000
KS ci ratio: 6.189857e-03	ci left: 8.863757e-01	ci right 8.918991e-01	k: 44458	n:50000
DIAPH2   50000 perm   13 sec   (3997 perm/sec)   p_kst 8.891600e-01   p_cons 6.060000e-03   p_joint 4.132000e-02

Joint ci ratio: 8.105720e-02	ci left: 3.599391e-02	ci right 3.905103e-02	k: 2250	n:60000
Cons ci ratio: 2.045554e-01	ci left: 5.460986e-03	ci right 6.720841e-03	k: 364	n:60000
KS ci ratio: 5.656035e-03	ci left: 8.864256e-01	ci right 8.914700e-01	k: 53338	n:60000
DIAPH2   60000 perm   15 sec   (3931 perm/sec)   p_kst 8.889667e-01   p_cons 6.066667e-03   p_joint 3.750000e-02

Joint ci ratio: 7.066044e-02	ci left: 4.062422e-02	ci right 4.361389e-02	k: 2947	n:70000
Cons ci ratio: 1.904724e-01	ci left: 5.441317e-03	ci right 6.600205e-03	k: 420	n:70000
KS ci ratio: 5.234040e-03	ci left: 8.867073e-01	ci right 8.913747e-01	k: 62234	n:70000
DIAPH2   70000 perm   18 sec   (3866 perm/sec)   p_kst 8.890571e-01   p_cons 6.000000e-03   p_joint 4.210000e-02

Joint ci ratio: 6.802898e-02	ci left: 3.849270e-02	ci right 4.121580e-02	k: 3187	n:80000
Cons ci ratio: 1.791365e-01	ci left: 5.416863e-03	ci right 6.494439e-03	k: 475	n:80000
KS ci ratio: 4.899254e-03	ci left: 8.867272e-01	ci right 8.910945e-01	k: 71114	n:80000
DIAPH2   80000 perm   21 sec   (3805 perm/sec)   p_kst 8.889250e-01   p_cons 5.937500e-03   p_joint 3.983750e-02

Joint ci ratio: 7.259867e-02	ci left: 3.023745e-02	ci right 3.252622e-02	k: 2823	n:90000
Cons ci ratio: 1.746436e-01	ci left: 5.080390e-03	ci right 6.063002e-03	k: 500	n:90000
KS ci ratio: 4.617031e-03	ci left: 8.869408e-01	ci right 8.910563e-01	k: 80011	n:90000
DIAPH2   90000 perm   24 sec   (3728 perm/sec)   p_kst 8.890111e-01   p_cons 5.555556e-03   p_joint 3.136667e-02

Joint ci ratio: 6.404483e-02	ci left: 3.495231e-02	ci right 3.727469e-02	k: 3610	n:100000
Cons ci ratio: 1.641563e-01	ci left: 5.204416e-03	ci right 6.144604e-03	k: 566	n:100000
KS ci ratio: 4.381222e-03	ci left: 8.869964e-01	ci right 8.909010e-01	k: 88896	n:100000
DIAPH2   100000 perm   27 sec   (3677 perm/sec)   p_kst 8.889600e-01   p_cons 5.660000e-03   p_joint 3.610000e-02

Joint ci ratio: 5.830344e-02	ci left: 3.832069e-02	ci right 4.063094e-02	k: 4341	n:110000
Cons ci ratio: 1.571135e-01	ci left: 5.185013e-03	ci right 6.077720e-03	k: 618	n:110000
KS ci ratio: 4.200292e-03	ci left: 8.859934e-01	ci right 8.897316e-01	k: 97666	n:110000
DIAPH2   110000 perm   31 sec   (3600 perm/sec)   p_kst 8.878727e-01   p_cons 5.618182e-03   p_joint 3.946364e-02

Joint ci ratio: 5.710578e-02	ci left: 3.670332e-02	ci right 3.886909e-02	k: 4533	n:120000
Cons ci ratio: 1.523973e-01	ci left: 5.065320e-03	ci right 5.908849e-03	k: 657	n:120000
KS ci ratio: 4.018895e-03	ci left: 8.862021e-01	ci right 8.897791e-01	k: 106560	n:120000
DIAPH2   120000 perm   34 sec   (3557 perm/sec)   p_kst 8.880000e-01   p_cons 5.475000e-03   p_joint 3.777500e-02

Joint ci ratio: 5.356327e-02	ci left: 3.850836e-02	ci right 4.063532e-02	k: 5143	n:130000
Cons ci ratio: 1.469203e-01	ci left: 5.045891e-03	ci right 5.853333e-03	k: 707	n:130000
KS ci ratio: 3.864508e-03	ci left: 8.861028e-01	ci right 8.895414e-01	k: 115418	n:130000
DIAPH2   130000 perm   37 sec   (3491 perm/sec)   p_kst 8.878308e-01   p_cons 5.438462e-03   p_joint 3.956154e-02

Joint ci ratio: 5.180353e-02	ci left: 3.827404e-02	ci right 4.031652e-02	k: 5500	n:140000
Cons ci ratio: 1.409696e-01	ci left: 5.105507e-03	ci right 5.886617e-03	k: 768	n:140000
KS ci ratio: 3.723835e-03	ci left: 8.861711e-01	ci right 8.894843e-01	k: 124297	n:140000
DIAPH2   140000 perm   41 sec   (3435 perm/sec)   p_kst 8.878357e-01   p_cons 5.485714e-03   p_joint 3.928571e-02

Joint ci ratio: 4.862567e-02	ci left: 4.051600e-02	ci right 4.254177e-02	k: 6228	n:150000
Cons ci ratio: 1.363501e-01	ci left: 5.106217e-03	ci right 5.859758e-03	k: 821	n:150000
KS ci ratio: 3.597726e-03	ci left: 8.862188e-01	ci right 8.894195e-01	k: 133174	n:150000
DIAPH2   150000 perm   44 sec   (3391 perm/sec)   p_kst 8.878267e-01   p_cons 5.473333e-03   p_joint 4.152000e-02

Joint ci ratio: 4.140690e-02	ci left: 5.194437e-02	ci right 5.414686e-02	k: 8486	n:160000
Cons ci ratio: 1.311064e-01	ci left: 5.191837e-03	ci right 5.926254e-03	k: 888	n:160000
KS ci ratio: 3.561188e-03	ci left: 8.817733e-01	ci right 8.849253e-01	k: 141337	n:160000
DIAPH2   160000 perm   48 sec   (3331 perm/sec)   p_kst 8.833562e-01   p_cons 5.550000e-03   p_joint 5.303750e-02

Joint ci ratio: 3.983223e-02	ci left: 5.282538e-02	ci right 5.497810e-02	k: 9162	n:170000
Cons ci ratio: 1.268925e-01	ci left: 5.227994e-03	ci right 5.941967e-03	k: 948	n:170000
KS ci ratio: 3.458067e-03	ci left: 8.816283e-01	ci right 8.846881e-01	k: 150138	n:170000
DIAPH2   170000 perm   52 sec   (3295 perm/sec)   p_kst 8.831647e-01   p_cons 5.576471e-03   p_joint 5.389412e-02

Joint ci ratio: 4.065108e-02	ci left: 4.812279e-02	ci right 5.012510e-02	k: 8841	n:180000
Cons ci ratio: 1.229380e-01	ci left: 5.271239e-03	ci right 5.967051e-03	k: 1010	n:180000
KS ci ratio: 3.358522e-03	ci left: 8.818023e-01	ci right 8.847743e-01	k: 158993	n:180000
DIAPH2   180000 perm   55 sec   (3256 perm/sec)   p_kst 8.832944e-01   p_cons 5.611111e-03   p_joint 4.911667e-02

Joint ci ratio: 3.938353e-02	ci left: 4.858106e-02	ci right 5.053798e-02	k: 9415	n:190000
Cons ci ratio: 1.200083e-01	ci left: 5.248964e-03	ci right 5.924150e-03	k: 1060	n:190000
KS ci ratio: 3.269272e-03	ci left: 8.818214e-01	ci right 8.847142e-01	k: 167822	n:190000
DIAPH2   190000 perm   59 sec   (3215 perm/sec)   p_kst 8.832737e-01   p_cons 5.578947e-03   p_joint 4.955263e-02

Joint ci ratio: 3.848566e-02	ci left: 4.836514e-02	ci right 5.026795e-02	k: 9862	n:200000
Cons ci ratio: 1.166989e-01	ci left: 5.282492e-03	ci right 5.941962e-03	k: 1121	n:200000
KS ci ratio: 3.186161e-03	ci left: 8.818798e-01	ci right 8.846991e-01	k: 176659	n:200000
DIAPH2   200000 perm   63 sec   (3174 perm/sec)   p_kst 8.832950e-01   p_cons 5.605000e-03   p_joint 4.931000e-02

Joint ci ratio: 3.805979e-02	ci left: 4.716981e-02	ci right 4.900460e-02	k: 10097	n:210000
Cons ci ratio: 1.132168e-01	ci left: 5.354705e-03	ci right 6.001911e-03	k: 1191	n:210000
KS ci ratio: 3.111452e-03	ci left: 8.817756e-01	ci right 8.845281e-01	k: 185463	n:210000
DIAPH2   210000 perm   67 sec   (3139 perm/sec)   p_kst 8.831571e-01   p_cons 5.671429e-03   p_joint 4.808095e-02

Joint ci ratio: 3.829665e-02	ci left: 4.458786e-02	ci right 4.633324e-02	k: 10000	n:220000
Cons ci ratio: 1.108713e-01	ci left: 5.336628e-03	ci right 5.967413e-03	k: 1242	n:220000
KS ci ratio: 3.040554e-03	ci left: 8.817638e-01	ci right 8.844534e-01	k: 194285	n:220000
DIAPH2   220000 perm   71 sec   (3108 perm/sec)   p_kst 8.831136e-01   p_cons 5.645455e-03   p_joint 4.545455e-02

Joint ci ratio: 3.844491e-02	ci left: 4.241579e-02	ci right 4.408270e-02	k: 9946	n:230000
Cons ci ratio: 1.082460e-01	ci left: 5.362555e-03	ci right 5.980438e-03	k: 1303	n:230000
KS ci ratio: 2.976483e-03	ci left: 8.816008e-01	ci right 8.842330e-01	k: 203072	n:230000
DIAPH2   230000 perm   75 sec   (3075 perm/sec)   p_kst 8.829217e-01   p_cons 5.665217e-03   p_joint 4.324348e-02

Joint ci ratio: 3.923613e-02	ci left: 3.914520e-02	ci right 4.071594e-02	k: 9582	n:240000
Cons ci ratio: 1.063882e-01	ci left: 5.325631e-03	ci right 5.928069e-03	k: 1349	n:240000
KS ci ratio: 2.916231e-03	ci left: 8.814562e-01	ci right 8.840346e-01	k: 211860	n:240000
DIAPH2   240000 perm   79 sec   (3039 perm/sec)   p_kst 8.827500e-01   p_cons 5.620833e-03   p_joint 3.992500e-02

Joint ci ratio: 3.863995e-02	ci left: 3.877548e-02	ci right 4.030722e-02	k: 9884	n:250000
Cons ci ratio: 1.047739e-01	ci left: 5.276162e-03	ci right 5.863390e-03	k: 1391	n:250000
KS ci ratio: 2.859270e-03	ci left: 8.813398e-01	ci right 8.838673e-01	k: 220652	n:250000
DIAPH2   250000 perm   83 sec   (3010 perm/sec)   p_kst 8.826080e-01   p_cons 5.564000e-03   p_joint 3.953600e-02

Joint ci ratio: 3.785013e-02	ci left: 3.886885e-02	ci right 4.037221e-02	k: 10300	n:260000
Cons ci ratio: 1.028350e-01	ci left: 5.271786e-03	ci right 5.847012e-03	k: 1444	n:260000
KS ci ratio: 2.803592e-03	ci left: 8.813758e-01	ci right 8.838541e-01	k: 229481	n:260000
DIAPH2   260000 perm   87 sec   (2979 perm/sec)   p_kst 8.826192e-01   p_cons 5.553846e-03   p_joint 3.961538e-02

Joint ci ratio: 3.711044e-02	ci left: 3.894825e-02	ci right 4.042461e-02	k: 10714	n:270000
Cons ci ratio: 1.010678e-01	ci left: 5.260606e-03	ci right 5.824162e-03	k: 1495	n:270000
KS ci ratio: 2.751635e-03	ci left: 8.813650e-01	ci right 8.837972e-01	k: 238298	n:270000
DIAPH2   270000 perm   92 sec   (2938 perm/sec)   p_kst 8.825852e-01   p_cons 5.537037e-03   p_joint 3.968148e-02

Joint ci ratio: 3.522760e-02	ci left: 4.160348e-02	ci right 4.309887e-02	k: 11857	n:280000
Cons ci ratio: 9.919547e-02	ci left: 5.271202e-03	ci right 5.824823e-03	k: 1552	n:280000
KS ci ratio: 2.703301e-03	ci left: 8.812908e-01	ci right 8.836799e-01	k: 247097	n:280000
DIAPH2   280000 perm   96 sec   (2904 perm/sec)   p_kst 8.824893e-01   p_cons 5.542857e-03   p_joint 4.234643e-02

Outputting figure to mutsig2_images.part000000000050/DIAPH2.12_3468_280000_0.88249_0.0055429_0.042346.png
                gene_name: DIAPH2
               theta_stop: 0.099 
                    nperm: 280000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.0055 
      ci_cons_bounds_left: 0.0053 
     ci_cons_bounds_right: 0.0058 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.043 

Current progress: 7 percent done.
DIDO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.338274e-01	ci left: 1.133070e-02	ci right 1.595903e-02	k: 135	n:10000
Cons ci ratio: 2.102203e-01	ci left: 3.005970e-02	ci right 3.721534e-02	k: 335	n:10000
KS ci ratio: 1.932931e-01	ci left: 3.567168e-02	ci right 4.339951e-02	k: 394	n:10000
DIDO1   10000 perm   3 sec   (3917 perm/sec)   p_kst 3.940000e-02   p_cons 3.350000e-02   p_joint 1.350000e-02

Joint ci ratio: 1.784803e-01	ci left: 2.144505e-02	ci right 2.569502e-02	k: 470	n:20000
Cons ci ratio: 1.460843e-01	ci left: 3.220637e-02	ci right 3.733005e-02	k: 694	n:20000
KS ci ratio: 1.370436e-01	ci left: 3.660089e-02	ci right 4.203409e-02	k: 785	n:20000
DIDO1   20000 perm   6 sec   (3510 perm/sec)   p_kst 3.925000e-02   p_cons 3.470000e-02   p_joint 2.350000e-02

Joint ci ratio: 1.469593e-01	ci left: 2.146189e-02	ci right 2.489798e-02	k: 694	n:30000
Cons ci ratio: 1.188948e-01	ci left: 3.288409e-02	ci right 3.707326e-02	k: 1048	n:30000
KS ci ratio: 1.132021e-01	ci left: 3.625368e-02	ci right 4.063629e-02	k: 1152	n:30000
DIDO1   30000 perm   9 sec   (3414 perm/sec)   p_kst 3.840000e-02   p_cons 3.493333e-02   p_joint 2.313333e-02

Joint ci ratio: 1.483756e-01	ci left: 1.587624e-02	ci right 1.844454e-02	k: 685	n:40000
Cons ci ratio: 1.030299e-01	ci left: 3.312280e-02	ci right 3.674512e-02	k: 1396	n:40000
KS ci ratio: 9.696979e-02	ci left: 3.734358e-02	ci right 4.117368e-02	k: 1569	n:40000
DIDO1   40000 perm   12 sec   (3344 perm/sec)   p_kst 3.922500e-02   p_cons 3.490000e-02   p_joint 1.712500e-02

Joint ci ratio: 9.913947e-02	ci left: 2.881486e-02	ci right 3.184000e-02	k: 1515	n:50000
Cons ci ratio: 9.262808e-02	ci left: 3.297599e-02	ci right 3.619834e-02	k: 1728	n:50000
KS ci ratio: 8.672112e-02	ci left: 3.755489e-02	ci right 4.097886e-02	k: 1962	n:50000
DIDO1   50000 perm   15 sec   (3290 perm/sec)   p_kst 3.924000e-02   p_cons 3.456000e-02   p_joint 3.030000e-02

Outputting figure to mutsig2_images.part000000000050/DIDO1.12_6909_50000_0.03924_0.03456_0.0303.png
                gene_name: DIDO1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 8 percent done.
DHX38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.362898e-01	ci left: 7.117069e-02	ci right 8.167765e-02	k: 763	n:10000
Cons ci ratio: 1.874410e-01	ci left: 3.796147e-02	ci right 4.590818e-02	k: 418	n:10000
KS ci ratio: 5.061829e-02	ci left: 3.653000e-01	ci right 3.843730e-01	k: 3748	n:10000
DHX38   10000 perm   2 sec   (4635 perm/sec)   p_kst 3.748000e-01   p_cons 4.180000e-02   p_joint 7.630000e-02

Joint ci ratio: 7.363845e-02	ci left: 1.195114e-01	ci right 1.286982e-01	k: 2481	n:20000
Cons ci ratio: 1.340536e-01	ci left: 3.824541e-02	ci right 4.378904e-02	k: 819	n:20000
KS ci ratio: 3.604954e-02	ci left: 3.647973e-01	ci right 3.782401e-01	k: 7430	n:20000
DHX38   20000 perm   5 sec   (4203 perm/sec)   p_kst 3.715000e-01   p_cons 4.095000e-02   p_joint 1.240500e-01

Joint ci ratio: 5.869462e-02	ci left: 1.256213e-01	ci right 1.332507e-01	k: 3882	n:30000
Cons ci ratio: 1.095016e-01	ci left: 3.871914e-02	ci right 4.323697e-02	k: 1228	n:30000
KS ci ratio: 2.938288e-02	ci left: 3.668589e-01	ci right 3.778325e-01	k: 11170	n:30000
DHX38   30000 perm   7 sec   (4028 perm/sec)   p_kst 3.723333e-01   p_cons 4.093333e-02   p_joint 1.294000e-01

Joint ci ratio: 4.836707e-02	ci left: 1.376278e-01	ci right 1.444744e-01	k: 5641	n:40000
Cons ci ratio: 9.410529e-02	ci left: 3.961521e-02	ci right 4.355170e-02	k: 1662	n:40000
KS ci ratio: 2.545674e-02	ci left: 3.674099e-01	ci right 3.769087e-01	k: 14886	n:40000
DHX38   40000 perm   10 sec   (3926 perm/sec)   p_kst 3.721500e-01   p_cons 4.155000e-02   p_joint 1.410250e-01

Outputting figure to mutsig2_images.part000000000050/DHX38.11_3788_40000_0.37215_0.04155_0.14103.png
                gene_name: DHX38
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 10 percent done.
DIP2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.470260e-02	ci left: 2.077708e-01	ci right 2.239950e-01	k: 2158	n:10000
Cons ci ratio: 3.949308e-02	ci left: 4.863528e-01	ci right 5.060494e-01	k: 4962	n:10000
KS ci ratio: 9.522390e-02	ci left: 1.379571e-01	ci right 1.518505e-01	k: 1448	n:10000
DIP2B   10000 perm   2 sec   (4258 perm/sec)   p_kst 1.448000e-01   p_cons 4.962000e-01   p_joint 2.158000e-01

Outputting figure to mutsig2_images.part000000000050/DIP2B.11_4883_10000_0.1448_0.4962_0.2158.png
                gene_name: DIP2B
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 12 percent done.
DLG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.543456e-01	ci left: 2.024526e-02	ci right 2.623692e-02	k: 231	n:10000
Cons ci ratio: 1.548769e-01	ci left: 5.552036e-02	ci right 6.493785e-02	k: 601	n:10000
KS ci ratio: 1.726867e-01	ci left: 4.475507e-02	ci right 5.331009e-02	k: 489	n:10000
DLG2   10000 perm   2 sec   (4729 perm/sec)   p_kst 4.890000e-02   p_cons 6.010000e-02   p_joint 2.310000e-02

Joint ci ratio: 1.453278e-01	ci left: 3.254402e-02	ci right 3.769229e-02	k: 701	n:20000
Cons ci ratio: 1.110461e-01	ci left: 5.538421e-02	ci right 6.194483e-02	k: 1172	n:20000
KS ci ratio: 1.225055e-01	ci left: 4.570923e-02	ci right 5.172285e-02	k: 973	n:20000
DLG2   20000 perm   5 sec   (4129 perm/sec)   p_kst 4.865000e-02   p_cons 5.860000e-02   p_joint 3.505000e-02

Joint ci ratio: 1.546509e-01	ci left: 1.934319e-02	ci right 2.261716e-02	k: 628	n:30000
Cons ci ratio: 9.087531e-02	ci left: 5.574003e-02	ci right 6.107923e-02	k: 1751	n:30000
KS ci ratio: 9.844263e-02	ci left: 4.772353e-02	ci right 5.269737e-02	k: 1505	n:30000
DLG2   30000 perm   7 sec   (4040 perm/sec)   p_kst 5.016667e-02   p_cons 5.836667e-02   p_joint 2.093333e-02

Joint ci ratio: 1.232885e-01	ci left: 2.312831e-02	ci right 2.619122e-02	k: 985	n:40000
Cons ci ratio: 7.836272e-02	ci left: 5.656326e-02	ci right 6.120104e-02	k: 2354	n:40000
KS ci ratio: 8.561386e-02	ci left: 4.766398e-02	ci right 5.195167e-02	k: 1991	n:40000
DLG2   40000 perm   10 sec   (3907 perm/sec)   p_kst 4.977500e-02   p_cons 5.885000e-02   p_joint 2.462500e-02

Joint ci ratio: 1.005855e-01	ci left: 2.799524e-02	ci right 3.097972e-02	k: 1473	n:50000
Cons ci ratio: 6.964789e-02	ci left: 5.750115e-02	ci right 6.167016e-02	k: 2978	n:50000
KS ci ratio: 7.691749e-02	ci left: 4.747750e-02	ci right 5.129504e-02	k: 2468	n:50000
DLG2   50000 perm   13 sec   (3845 perm/sec)   p_kst 4.936000e-02   p_cons 5.956000e-02   p_joint 2.946000e-02

Joint ci ratio: 8.214389e-02	ci left: 3.506260e-02	ci right 3.808244e-02	k: 2193	n:60000
Cons ci ratio: 6.513211e-02	ci left: 5.507598e-02	ci right 5.880035e-02	k: 3415	n:60000
KS ci ratio: 6.877264e-02	ci left: 4.959738e-02	ci right 5.314617e-02	k: 3081	n:60000
DLG2   60000 perm   16 sec   (3796 perm/sec)   p_kst 5.135000e-02   p_cons 5.691667e-02   p_joint 3.655000e-02

Outputting figure to mutsig2_images.part000000000050/DLG2.11_3237_60000_0.05135_0.056917_0.03655.png
                gene_name: DLG2
               theta_stop: 0.082 
                    nperm: 60000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 13 percent done.
DHTKD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.341629e-02	ci left: 7.282528e-01	ci right 7.456090e-01	k: 7370	n:10000
KS ci ratio: 3.737869e-02	ci left: 5.138555e-01	ci right 5.335307e-01	k: 5237	n:10000
DHTKD1   10000 perm   2 sec   (5497 perm/sec)   p_kst 5.237000e-01   p_cons 7.370000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DHTKD1.9_2828_10000_0.5237_0.737_1.png
                gene_name: DHTKD1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
DIP2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.635179e-02	ci left: 3.168145e-01	ci right 3.352869e-01	k: 3260	n:10000
Cons ci ratio: 5.074812e-02	ci left: 3.641064e-01	ci right 3.831672e-01	k: 3736	n:10000
KS ci ratio: 6.355219e-02	ci left: 2.667599e-01	ci right 2.843710e-01	k: 2755	n:10000
DIP2C   10000 perm   2 sec   (4187 perm/sec)   p_kst 2.755000e-01   p_cons 3.736000e-01   p_joint 3.260000e-01

Outputting figure to mutsig2_images.part000000000050/DIP2C.9_4819_10000_0.2755_0.3736_0.326.png
                gene_name: DIP2C
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 17 percent done.
DIS3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.090790e-02	ci left: 9.229644e-01	ci right 9.331845e-01	k: 9282	n:10000
KS ci ratio: 9.308130e-03	ci left: 9.421155e-01	ci right 9.510221e-01	k: 9467	n:10000
DIS3L   10000 perm   2 sec   (5022 perm/sec)   p_kst 9.467000e-01   p_cons 9.282000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DIS3L.9_3233_10000_0.9467_0.9282_1.png
                gene_name: DIS3L
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
DHX29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.592497e-02	ci left: 4.116961e-01	ci right 4.311497e-01	k: 4214	n:10000
Cons ci ratio: 3.508942e-02	ci left: 5.452950e-01	ci right 5.648729e-01	k: 5551	n:10000
KS ci ratio: 6.555229e-02	ci left: 2.546878e-01	ci right 2.720503e-01	k: 2633	n:10000
DHX29   10000 perm   2 sec   (4740 perm/sec)   p_kst 2.633000e-01   p_cons 5.551000e-01   p_joint 4.214000e-01

Outputting figure to mutsig2_images.part000000000050/DHX29.8_4218_10000_0.2633_0.5551_0.4214.png
                gene_name: DHX29
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 20 percent done.
DICER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.075105e-02	ci left: 6.093982e-01	ci right 6.285324e-01	k: 6190	n:10000
KS ci ratio: 1.635946e-02	ci left: 8.445820e-01	ci right 8.586125e-01	k: 8517	n:10000
DICER1   10000 perm   2 sec   (4095 perm/sec)   p_kst 8.517000e-01   p_cons 6.190000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DICER1.8_5873_10000_0.8517_0.619_1.png
                gene_name: DICER1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
DIP2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.946119e-02	ci left: 6.294971e-01	ci right 6.484219e-01	k: 6390	n:10000
Cons ci ratio: 6.289034e-02	ci left: 2.709178e-01	ci right 2.886106e-01	k: 2797	n:10000
KS ci ratio: 2.812068e-02	ci left: 6.508212e-01	ci right 6.694854e-01	k: 6602	n:10000
DIP2A   10000 perm   2 sec   (4452 perm/sec)   p_kst 6.602000e-01   p_cons 2.797000e-01   p_joint 6.390000e-01

Outputting figure to mutsig2_images.part000000000050/DIP2A.8_4981_10000_0.6602_0.2797_0.639.png
                gene_name: DIP2A
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 23 percent done.
DLG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.741616e-02	ci left: 5.133552e-01	ci right 5.330313e-01	k: 5232	n:10000
Cons ci ratio: 4.545732e-02	ci left: 4.166796e-01	ci right 4.361633e-01	k: 4264	n:10000
KS ci ratio: 3.914713e-02	ci left: 4.907512e-01	ci right 5.104484e-01	k: 5006	n:10000
DLG3   10000 perm   2 sec   (4949 perm/sec)   p_kst 5.006000e-01   p_cons 4.264000e-01   p_joint 5.232000e-01

Outputting figure to mutsig2_images.part000000000050/DLG3.8_2818_10000_0.5006_0.4264_0.5232.png
                gene_name: DLG3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 25 percent done.
DHX30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.751375e-02	ci left: 5.120544e-01	ci right 5.317328e-01	k: 5219	n:10000
Cons ci ratio: 8.567447e-02	ci left: 1.656325e-01	ci right 1.805584e-01	k: 1730	n:10000
KS ci ratio: 1.324394e-02	ci left: 8.914916e-01	ci right 9.034757e-01	k: 8976	n:10000
DHX30   10000 perm   2 sec   (4723 perm/sec)   p_kst 8.976000e-01   p_cons 1.730000e-01   p_joint 5.219000e-01

Outputting figure to mutsig2_images.part000000000050/DHX30.7_3676_10000_0.8976_0.173_0.5219.png
                gene_name: DHX30
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 27 percent done.
DIS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.163709e-01	ci left: 9.593994e-02	ci right 1.078931e-01	k: 1018	n:10000
Cons ci ratio: 1.290236e-01	ci left: 7.902317e-02	ci right 9.002028e-02	k: 844	n:10000
KS ci ratio: 6.931866e-02	ci left: 2.338293e-01	ci right 2.507211e-01	k: 2422	n:10000
DIS3   10000 perm   2 sec   (5056 perm/sec)   p_kst 2.422000e-01   p_cons 8.440000e-02   p_joint 1.018000e-01

Joint ci ratio: 7.134306e-02	ci left: 1.264513e-01	ci right 1.358562e-01	k: 2622	n:20000
Cons ci ratio: 9.589858e-02	ci left: 7.339088e-02	ci right 8.083263e-02	k: 1541	n:20000
KS ci ratio: 4.913658e-02	ci left: 2.354326e-01	ci right 2.473427e-01	k: 4827	n:20000
DIS3   20000 perm   4 sec   (4644 perm/sec)   p_kst 2.413500e-01   p_cons 7.705000e-02   p_joint 1.311000e-01

Outputting figure to mutsig2_images.part000000000050/DIS3.7_3033_20000_0.24135_0.07705_0.1311.png
                gene_name: DIS3
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 28 percent done.
DISC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.112145e-01	ci left: 1.043218e-01	ci right 1.167061e-01	k: 1104	n:10000
Cons ci ratio: 1.738085e-01	ci left: 4.417993e-02	ci right 5.268561e-02	k: 483	n:10000
KS ci ratio: 3.827232e-02	ci left: 5.020507e-01	ci right 5.217424e-01	k: 5119	n:10000
DISC1   10000 perm   2 sec   (5117 perm/sec)   p_kst 5.119000e-01   p_cons 4.830000e-02   p_joint 1.104000e-01

Joint ci ratio: 7.922764e-02	ci left: 1.047130e-01	ci right 1.134010e-01	k: 2180	n:20000
Cons ci ratio: 1.211389e-01	ci left: 4.672873e-02	ci right 5.280302e-02	k: 994	n:20000
KS ci ratio: 2.676560e-02	ci left: 5.104976e-01	ci right 5.243973e-01	k: 10349	n:20000
DISC1   20000 perm   4 sec   (4607 perm/sec)   p_kst 5.174500e-01   p_cons 4.970000e-02   p_joint 1.090000e-01

Joint ci ratio: 5.078943e-02	ci left: 1.614425e-01	ci right 1.698890e-01	k: 4969	n:30000
Cons ci ratio: 1.008266e-01	ci left: 4.554319e-02	ci right 5.041150e-02	k: 1438	n:30000
KS ci ratio: 2.198399e-02	ci left: 5.088266e-01	ci right 5.201706e-01	k: 15435	n:30000
DISC1   30000 perm   7 sec   (4416 perm/sec)   p_kst 5.145000e-01   p_cons 4.793333e-02   p_joint 1.656333e-01

Joint ci ratio: 6.139093e-02	ci left: 8.965319e-02	ci right 9.535612e-02	k: 3699	n:40000
Cons ci ratio: 9.500292e-02	ci left: 3.888223e-02	ci right 4.278478e-02	k: 1632	n:40000
KS ci ratio: 1.907420e-02	ci left: 5.086636e-01	ci right 5.184845e-01	k: 20543	n:40000
DISC1   40000 perm   9 sec   (4282 perm/sec)   p_kst 5.135750e-01   p_cons 4.080000e-02   p_joint 9.247500e-02

Outputting figure to mutsig2_images.part000000000050/DISC1.7_3458_40000_0.51358_0.0408_0.092475.png
                gene_name: DISC1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.095 

Current progress: 30 percent done.
DISP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.121749e-02	ci left: 3.598301e-01	ci right 3.788461e-01	k: 3693	n:10000
Cons ci ratio: 1.033792e-01	ci left: 1.191644e-01	ci right 1.322545e-01	k: 1256	n:10000
KS ci ratio: 1.834860e-02	ci left: 8.126320e-01	ci right 8.277809e-01	k: 8203	n:10000
DISP2   10000 perm   2 sec   (4783 perm/sec)   p_kst 8.203000e-01   p_cons 1.256000e-01   p_joint 3.693000e-01

Joint ci ratio: 4.181732e-02	ci left: 2.988217e-01	ci right 3.116350e-01	k: 6104	n:20000
Cons ci ratio: 7.323477e-02	ci left: 1.206923e-01	ci right 1.299169e-01	k: 2505	n:20000
KS ci ratio: 1.293217e-02	ci left: 8.158684e-01	ci right 8.265380e-01	k: 16425	n:20000
DISP2   20000 perm   5 sec   (4239 perm/sec)   p_kst 8.212500e-01   p_cons 1.252500e-01   p_joint 3.052000e-01

Outputting figure to mutsig2_images.part000000000050/DISP2.7_4238_20000_0.82125_0.12525_0.3052.png
                gene_name: DISP2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 32 percent done.
DKK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.661901e-01	ci left: 4.830553e-02	ci right 5.715732e-02	k: 526	n:10000
Cons ci ratio: 8.720168e-02	ci left: 1.607198e-01	ci right 1.754741e-01	k: 1680	n:10000
KS ci ratio: 1.607861e-01	ci left: 5.157346e-02	ci right 6.068728e-02	k: 560	n:10000
DKK4   10000 perm   2 sec   (5926 perm/sec)   p_kst 5.600000e-02   p_cons 1.680000e-01   p_joint 5.260000e-02

Joint ci ratio: 1.374995e-01	ci left: 3.635916e-02	ci right 4.177590e-02	k: 780	n:20000
Cons ci ratio: 6.353391e-02	ci left: 1.547958e-01	ci right 1.650033e-01	k: 3197	n:20000
KS ci ratio: 1.172820e-01	ci left: 4.978945e-02	ci right 5.604134e-02	k: 1057	n:20000
DKK4   20000 perm   4 sec   (5356 perm/sec)   p_kst 5.285000e-02   p_cons 1.598500e-01   p_joint 3.900000e-02

Joint ci ratio: 1.126445e-01	ci left: 3.661037e-02	ci right 4.101285e-02	k: 1163	n:30000
Cons ci ratio: 5.195932e-02	ci left: 1.553073e-01	ci right 1.636254e-01	k: 4783	n:30000
KS ci ratio: 9.572925e-02	ci left: 5.039385e-02	ci right 5.549316e-02	k: 1587	n:30000
DKK4   30000 perm   6 sec   (5116 perm/sec)   p_kst 5.290000e-02   p_cons 1.594333e-01   p_joint 3.876667e-02

Joint ci ratio: 8.740651e-02	ci left: 4.577863e-02	ci right 4.998732e-02	k: 1914	n:40000
Cons ci ratio: 4.505564e-02	ci left: 1.555279e-01	ci right 1.627217e-01	k: 6364	n:40000
KS ci ratio: 8.320205e-02	ci left: 5.038338e-02	ci right 5.478186e-02	k: 2102	n:40000
DKK4   40000 perm   8 sec   (4957 perm/sec)   p_kst 5.255000e-02   p_cons 1.591000e-01   p_joint 4.785000e-02

Outputting figure to mutsig2_images.part000000000050/DKK4.7_691_40000_0.05255_0.1591_0.04785.png
                gene_name: DKK4
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.050 

Current progress: 33 percent done.
DHX16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.727913e-02	ci left: 6.644110e-01	ci right 6.828878e-01	k: 6737	n:10000
Cons ci ratio: 1.325833e-02	ci left: 8.912866e-01	ci right 9.032809e-01	k: 8974	n:10000
KS ci ratio: 3.500427e-02	ci left: 5.464973e-01	ci right 5.660699e-01	k: 5563	n:10000
DHX16   10000 perm   2 sec   (5122 perm/sec)   p_kst 5.563000e-01   p_cons 8.974000e-01   p_joint 6.737000e-01

Outputting figure to mutsig2_images.part000000000050/DHX16.6_3237_10000_0.5563_0.8974_0.6737.png
                gene_name: DHX16
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 35 percent done.
DHX8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.098776e-01	ci left: 1.066631e-01	ci right 1.191634e-01	k: 1128	n:10000
Cons ci ratio: 4.897433e-02	ci left: 3.808216e-01	ci right 4.000423e-01	k: 3904	n:10000
KS ci ratio: 1.336559e-01	ci left: 7.388330e-02	ci right 8.456334e-02	k: 791	n:10000
DHX8   10000 perm   2 sec   (4254 perm/sec)   p_kst 7.910000e-02   p_cons 3.904000e-01   p_joint 1.128000e-01

Joint ci ratio: 6.717203e-02	ci left: 1.405907e-01	ci right 1.504126e-01	k: 2909	n:20000
Cons ci ratio: 3.379690e-02	ci left: 3.952943e-01	ci right 4.089342e-01	k: 8042	n:20000
KS ci ratio: 9.406027e-02	ci left: 7.612963e-02	ci right 8.369304e-02	k: 1597	n:20000
DHX8   20000 perm   5 sec   (3959 perm/sec)   p_kst 7.985000e-02   p_cons 4.021000e-01   p_joint 1.454500e-01

Outputting figure to mutsig2_images.part000000000050/DHX8.6_3755_20000_0.07985_0.4021_0.14545.png
                gene_name: DHX8
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 37 percent done.
DKK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.119563e-01	ci left: 1.030540e-01	ci right 1.153747e-01	k: 1091	n:10000
KS ci ratio: 1.481028e+00	ci left: 2.202202e-04	ci right 1.305486e-03	k: 6	n:10000
DKK2   10000 perm   2 sec   (6584 perm/sec)   p_kst 6.000000e-04   p_cons 1.091000e-01   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 7.928886e-02	ci left: 1.045657e-01	ci right 1.132484e-01	k: 2177	n:20000
KS ci ratio: 9.503118e-01	ci left: 4.573361e-04	ci right 1.298826e-03	k: 16	n:20000
DKK2   20000 perm   4 sec   (5332 perm/sec)   p_kst 8.000000e-04   p_cons 1.088500e-01   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 6.330258e-02	ci left: 1.097342e-01	ci right 1.169408e-01	k: 3399	n:30000
KS ci ratio: 7.036772e-01	ci left: 6.747943e-04	ci right 1.427257e-03	k: 30	n:30000
DKK2   30000 perm   6 sec   (5259 perm/sec)   p_kst 1.000000e-03   p_cons 1.133000e-01   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 5.516089e-02	ci left: 1.089993e-01	ci right 1.152071e-01	k: 4483	n:40000
KS ci ratio: 6.194887e-01	ci left: 6.934093e-04	ci right 1.332619e-03	k: 39	n:40000
DKK2   40000 perm   8 sec   (5111 perm/sec)   p_kst 9.750000e-04   p_cons 1.120750e-01   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 5.157774e-02	ci left: 1.008826e-01	ci right 1.062435e-01	k: 5177	n:50000
KS ci ratio: 5.381626e-01	ci left: 7.768163e-04	ci right 1.363601e-03	k: 52	n:50000
DKK2   50000 perm   10 sec   (4892 perm/sec)   p_kst 1.040000e-03   p_cons 1.035400e-01   p_joint 0

Joint ci ratio: 3.897229e-01	ci left: 1.356266e-03	ci right 2.026748e-03	k: 100	n:60000
Cons ci ratio: 4.701470e-02	ci left: 1.013869e-01	ci right 1.062848e-01	k: 6229	n:60000
KS ci ratio: 4.936101e-01	ci left: 7.923397e-04	ci right 1.324494e-03	k: 62	n:60000
DKK2   60000 perm   12 sec   (4849 perm/sec)   p_kst 1.033333e-03   p_cons 1.038167e-01   p_joint 1.666667e-03

Joint ci ratio: 3.822631e-01	ci left: 1.214093e-03	ci right 1.799908e-03	k: 104	n:70000
Cons ci ratio: 4.172183e-02	ci left: 1.096444e-01	ci right 1.143306e-01	k: 7838	n:70000
KS ci ratio: 4.751355e-01	ci left: 7.418472e-04	ci right 1.215381e-03	k: 67	n:70000
DKK2   70000 perm   15 sec   (4705 perm/sec)   p_kst 9.571429e-04   p_cons 1.119714e-01   p_joint 1.485714e-03

Joint ci ratio: 3.804894e-01	ci left: 1.073617e-03	ci right 1.588642e-03	k: 105	n:80000
Cons ci ratio: 3.905634e-02	ci left: 1.096490e-01	ci right 1.140292e-01	k: 8946	n:80000
KS ci ratio: 4.326670e-01	ci left: 8.041499e-04	ci right 1.258290e-03	k: 81	n:80000
DKK2   80000 perm   17 sec   (4659 perm/sec)   p_kst 1.012500e-03   p_cons 1.118250e-01   p_joint 1.312500e-03

Joint ci ratio: 3.977989e-01	ci left: 8.640862e-04	ci right 1.302429e-03	k: 96	n:90000
Cons ci ratio: 3.686471e-02	ci left: 1.095498e-01	ci right 1.136752e-01	k: 10044	n:90000
KS ci ratio: 4.107176e-01	ci left: 8.041924e-04	ci right 1.229029e-03	k: 90	n:90000
DKK2   90000 perm   20 sec   (4600 perm/sec)   p_kst 1.000000e-03   p_cons 1.116000e-01   p_joint 1.066667e-03

Joint ci ratio: 4.084982e-01	ci left: 7.327366e-04	ci right 1.117163e-03	k: 91	n:100000
Cons ci ratio: 3.497315e-02	ci left: 1.096547e-01	ci right 1.135678e-01	k: 11160	n:100000
KS ci ratio: 3.998892e-01	ci left: 7.686726e-04	ci right 1.161203e-03	k: 95	n:100000
DKK2   100000 perm   22 sec   (4543 perm/sec)   p_kst 9.500000e-04   p_cons 1.116000e-01   p_joint 9.100000e-04

Joint ci ratio: 4.041425e-01	ci left: 6.824435e-04	ci right 1.035640e-03	k: 93	n:110000
Cons ci ratio: 3.552943e-02	ci left: 9.786339e-02	ci right 1.014123e-01	k: 10959	n:110000
KS ci ratio: 3.770152e-01	ci left: 7.972398e-04	ci right 1.175322e-03	k: 107	n:110000
DKK2   110000 perm   25 sec   (4455 perm/sec)   p_kst 9.727273e-04   p_cons 9.962727e-02   p_joint 8.454545e-04

Joint ci ratio: 4.177184e-01	ci left: 5.807348e-04	ci right 8.942091e-04	k: 87	n:120000
Cons ci ratio: 3.400005e-02	ci left: 9.802695e-02	ci right 1.014258e-01	k: 11966	n:120000
KS ci ratio: 3.637854e-01	ci left: 7.912653e-04	ci right 1.150224e-03	k: 115	n:120000
DKK2   120000 perm   27 sec   (4398 perm/sec)   p_kst 9.583333e-04   p_cons 9.971667e-02   p_joint 7.250000e-04

Joint ci ratio: 4.041694e-01	ci left: 5.774453e-04	ci right 8.763239e-04	k: 93	n:130000
Cons ci ratio: 3.266655e-02	ci left: 9.809176e-02	ci right 1.013569e-01	k: 12963	n:130000
KS ci ratio: 3.449641e-01	ci left: 8.215049e-04	ci right 1.170602e-03	k: 128	n:130000
DKK2   130000 perm   30 sec   (4340 perm/sec)   p_kst 9.846154e-04   p_cons 9.971538e-02   p_joint 7.153846e-04

Joint ci ratio: 3.958398e-01	ci left: 5.618953e-04	ci right 8.451626e-04	k: 97	n:140000
Cons ci ratio: 3.148358e-02	ci left: 9.812117e-02	ci right 1.012669e-01	k: 13956	n:140000
KS ci ratio: 3.335269e-01	ci left: 8.216368e-04	ci right 1.156728e-03	k: 137	n:140000
DKK2   140000 perm   33 sec   (4273 perm/sec)   p_kst 9.785714e-04   p_cons 9.968571e-02   p_joint 6.928571e-04

Joint ci ratio: 3.842531e-01	ci left: 5.605131e-04	ci right 8.327222e-04	k: 103	n:150000
Cons ci ratio: 3.038324e-02	ci left: 9.836704e-02	ci right 1.014084e-01	k: 14982	n:150000
KS ci ratio: 3.209783e-01	ci left: 8.341730e-04	ci right 1.158947e-03	k: 148	n:150000
DKK2   150000 perm   36 sec   (4206 perm/sec)   p_kst 9.866667e-04   p_cons 9.988000e-02   p_joint 6.866667e-04

Joint ci ratio: 3.806167e-01	ci left: 5.367779e-04	ci right 7.943757e-04	k: 105	n:160000
Cons ci ratio: 2.876004e-02	ci left: 1.025332e-01	ci right 1.055312e-01	k: 16644	n:160000
KS ci ratio: 3.136972e-01	ci left: 8.223024e-04	ci right 1.133737e-03	k: 155	n:160000
DKK2   160000 perm   39 sec   (4152 perm/sec)   p_kst 9.687500e-04   p_cons 1.040250e-01   p_joint 6.562500e-04

Joint ci ratio: 3.842689e-01	ci left: 4.945669e-04	ci right 7.347612e-04	k: 103	n:170000
Cons ci ratio: 2.793866e-02	ci left: 1.023306e-01	ci right 1.052359e-01	k: 17642	n:170000
KS ci ratio: 3.013877e-01	ci left: 8.445051e-04	ci right 1.149396e-03	k: 168	n:170000
DKK2   170000 perm   42 sec   (4096 perm/sec)   p_kst 9.882353e-04   p_cons 1.037765e-01   p_joint 6.058824e-04

Joint ci ratio: 3.861375e-01	ci left: 4.620718e-04	ci right 6.878530e-04	k: 102	n:180000
Cons ci ratio: 2.716840e-02	ci left: 1.022566e-01	ci right 1.050785e-01	k: 18659	n:180000
KS ci ratio: 2.944995e-01	ci left: 8.387108e-04	ci right 1.133298e-03	k: 176	n:180000
DKK2   180000 perm   45 sec   (4032 perm/sec)   p_kst 9.777778e-04   p_cons 1.036611e-01   p_joint 5.666667e-04

Joint ci ratio: 3.880326e-01	ci left: 4.330000e-04	ci right 6.458797e-04	k: 101	n:190000
Cons ci ratio: 2.642034e-02	ci left: 1.024582e-01	ci right 1.052066e-01	k: 19727	n:190000
KS ci ratio: 2.872869e-01	ci left: 8.384809e-04	ci right 1.124465e-03	k: 185	n:190000
DKK2   190000 perm   48 sec   (3939 perm/sec)   p_kst 9.736842e-04   p_cons 1.038263e-01   p_joint 5.315789e-04

Joint ci ratio: 3.736536e-01	ci left: 4.475224e-04	ci right 6.573952e-04	k: 109	n:200000
Cons ci ratio: 2.575989e-02	ci left: 1.024317e-01	ci right 1.051097e-01	k: 20753	n:200000
KS ci ratio: 2.756702e-01	ci left: 8.709145e-04	ci right 1.153869e-03	k: 201	n:200000
DKK2   200000 perm   52 sec   (3878 perm/sec)   p_kst 1.005000e-03   p_cons 1.037650e-01   p_joint 5.450000e-04

Joint ci ratio: 3.958864e-01	ci left: 3.745891e-04	ci right 5.634560e-04	k: 97	n:210000
Cons ci ratio: 2.514404e-02	ci left: 1.024276e-01	ci right 1.050405e-01	k: 21783	n:210000
KS ci ratio: 2.710165e-01	ci left: 8.604907e-04	ci right 1.134536e-03	k: 208	n:210000
DKK2   210000 perm   55 sec   (3814 perm/sec)   p_kst 9.904762e-04   p_cons 1.037286e-01   p_joint 4.619048e-04

Joint ci ratio: 3.806515e-01	ci left: 3.903779e-04	ci right 5.777387e-04	k: 105	n:220000
Cons ci ratio: 2.457876e-02	ci left: 1.023612e-01	ci right 1.049129e-01	k: 22799	n:220000
KS ci ratio: 2.659751e-01	ci left: 8.552934e-04	ci right 1.121773e-03	k: 216	n:220000
DKK2   220000 perm   59 sec   (3760 perm/sec)   p_kst 9.818182e-04   p_cons 1.036318e-01   p_joint 4.772727e-04

Joint ci ratio: 3.753781e-01	ci left: 3.852089e-04	ci right 5.668972e-04	k: 108	n:230000
Cons ci ratio: 2.401623e-02	ci left: 1.025607e-01	ci right 1.050580e-01	k: 23875	n:230000
KS ci ratio: 2.617879e-01	ci left: 8.465279e-04	ci right 1.105444e-03	k: 223	n:230000
DKK2   230000 perm   62 sec   (3705 perm/sec)   p_kst 9.695652e-04   p_cons 1.038043e-01   p_joint 4.695652e-04

Joint ci ratio: 3.824683e-01	ci left: 3.540780e-04	ci right 5.250318e-04	k: 104	n:240000
Cons ci ratio: 2.348276e-02	ci left: 1.028063e-01	ci right 1.052533e-01	k: 24966	n:240000
KS ci ratio: 2.561329e-01	ci left: 8.502186e-04	ci right 1.103749e-03	k: 233	n:240000
DKK2   240000 perm   66 sec   (3653 perm/sec)   p_kst 9.708333e-04   p_cons 1.040250e-01   p_joint 4.333333e-04

Joint ci ratio: 4.086122e-01	ci left: 2.930799e-04	ci right 4.468928e-04	k: 91	n:250000
Cons ci ratio: 2.250000e-02	ci left: 1.070486e-01	ci right 1.094885e-01	k: 27066	n:250000
KS ci ratio: 2.429811e-01	ci left: 9.137138e-04	ci right 1.170080e-03	k: 259	n:250000
DKK2   250000 perm   69 sec   (3603 perm/sec)   p_kst 1.036000e-03   p_cons 1.082640e-01   p_joint 3.640000e-04

Joint ci ratio: 4.086152e-01	ci left: 2.818072e-04	ci right 4.297053e-04	k: 91	n:260000
Cons ci ratio: 2.206776e-02	ci left: 1.070314e-01	ci right 1.094235e-01	k: 28138	n:260000
KS ci ratio: 2.379985e-01	ci left: 9.183298e-04	ci right 1.169929e-03	k: 270	n:260000
DKK2   260000 perm   73 sec   (3555 perm/sec)   p_kst 1.038462e-03   p_cons 1.082231e-01   p_joint 3.500000e-04

Joint ci ratio: 3.979435e-01	ci left: 2.880103e-04	ci right 4.341771e-04	k: 96	n:270000
Cons ci ratio: 2.168533e-02	ci left: 1.067874e-01	ci right 1.091321e-01	k: 29148	n:270000
KS ci ratio: 2.333102e-01	ci left: 9.226535e-04	ci right 1.169740e-03	k: 281	n:270000
DKK2   270000 perm   77 sec   (3508 perm/sec)   p_kst 1.040741e-03   p_cons 1.079556e-01   p_joint 3.555556e-04

Joint ci ratio: 2.750298e-01	ci left: 6.253953e-04	ci right 8.280271e-04	k: 202	n:280000
Cons ci ratio: 2.129994e-02	ci left: 1.067602e-01	ci right 1.090622e-01	k: 30214	n:280000
KS ci ratio: 2.300707e-01	ci left: 9.166143e-04	ci right 1.158191e-03	k: 289	n:280000
DKK2   280000 perm   81 sec   (3462 perm/sec)   p_kst 1.032143e-03   p_cons 1.079071e-01   p_joint 7.214286e-04

Joint ci ratio: 2.672422e-01	ci left: 6.423978e-04	ci right 8.436582e-04	k: 214	n:290000
Cons ci ratio: 2.091716e-02	ci left: 1.068931e-01	ci right 1.091561e-01	k: 31326	n:290000
KS ci ratio: 2.254528e-01	ci left: 9.240260e-04	ci right 1.161988e-03	k: 301	n:290000
DKK2   290000 perm   85 sec   (3421 perm/sec)   p_kst 1.037931e-03   p_cons 1.080207e-01   p_joint 7.379310e-04

Joint ci ratio: 2.595092e-01	ci left: 6.614585e-04	ci right 8.617223e-04	k: 227	n:300000
Cons ci ratio: 2.058348e-02	ci left: 1.067455e-01	ci right 1.089688e-01	k: 32356	n:300000
KS ci ratio: 2.200524e-01	ci left: 9.404366e-04	ci right 1.176039e-03	k: 316	n:300000
DKK2   300000 perm   89 sec   (3379 perm/sec)   p_kst 1.053333e-03   p_cons 1.078533e-01   p_joint 7.566667e-04

Joint ci ratio: 2.654021e-01	ci left: 6.099827e-04	ci right 7.995528e-04	k: 217	n:310000
Cons ci ratio: 2.024183e-02	ci left: 1.068292e-01	ci right 1.090169e-01	k: 33455	n:310000
KS ci ratio: 2.160015e-01	ci left: 9.466963e-04	ci right 1.178922e-03	k: 328	n:310000
DKK2   310000 perm   93 sec   (3334 perm/sec)   p_kst 1.058065e-03   p_cons 1.079194e-01   p_joint 7.000000e-04

Joint ci ratio: 2.717143e-01	ci left: 5.617724e-04	ci right 7.412210e-04	k: 207	n:320000
Cons ci ratio: 1.991827e-02	ci left: 1.068924e-01	ci right 1.090460e-01	k: 34549	n:320000
KS ci ratio: 2.112383e-01	ci left: 9.614803e-04	ci right 1.191459e-03	k: 343	n:320000
DKK2   320000 perm   97 sec   (3291 perm/sec)   p_kst 1.071875e-03   p_cons 1.079656e-01   p_joint 6.468750e-04

Joint ci ratio: 2.654078e-01	ci left: 5.730125e-04	ci right 7.510974e-04	k: 217	n:330000
Cons ci ratio: 1.959618e-02	ci left: 1.070848e-01	ci right 1.092070e-01	k: 35687	n:330000
KS ci ratio: 2.073558e-01	ci left: 9.696743e-04	ci right 1.196809e-03	k: 356	n:330000
DKK2   330000 perm   102 sec   (3250 perm/sec)   p_kst 1.078788e-03   p_cons 1.081424e-01   p_joint 6.575758e-04

Joint ci ratio: 2.624161e-01	ci left: 5.698922e-04	ci right 7.446830e-04	k: 222	n:340000
Cons ci ratio: 1.930923e-02	ci left: 1.070669e-01	ci right 1.091574e-01	k: 36757	n:340000
KS ci ratio: 2.036799e-01	ci left: 9.774226e-04	ci right 1.201808e-03	k: 369	n:340000
DKK2   340000 perm   106 sec   (3210 perm/sec)   p_kst 1.085294e-03   p_cons 1.081088e-01   p_joint 6.529412e-04

Joint ci ratio: 2.600948e-01	ci left: 5.642895e-04	ci right 7.355820e-04	k: 226	n:350000
Cons ci ratio: 1.902352e-02	ci left: 1.071613e-01	ci right 1.092223e-01	k: 37866	n:350000
KS ci ratio: 2.009823e-01	ci left: 9.766202e-04	ci right 1.197488e-03	k: 379	n:350000
DKK2   350000 perm   110 sec   (3169 perm/sec)   p_kst 1.082857e-03   p_cons 1.081886e-01   p_joint 6.457143e-04

Joint ci ratio: 2.799234e-01	ci left: 4.683212e-04	ci right 6.232358e-04	k: 195	n:360000
Cons ci ratio: 1.875986e-02	ci left: 1.071511e-01	ci right 1.091830e-01	k: 38939	n:360000
KS ci ratio: 1.983891e-01	ci left: 9.758808e-04	ci right 1.193389e-03	k: 389	n:360000
DKK2   360000 perm   115 sec   (3128 perm/sec)   p_kst 1.080556e-03   p_cons 1.081639e-01   p_joint 5.416667e-04

Joint ci ratio: 2.778063e-01	ci left: 4.632049e-04	ci right 6.150655e-04	k: 198	n:370000
Cons ci ratio: 1.850323e-02	ci left: 1.071793e-01	ci right 1.091836e-01	k: 40026	n:370000
KS ci ratio: 1.944393e-01	ci left: 9.906232e-04	ci right 1.206502e-03	k: 405	n:370000
DKK2   370000 perm   120 sec   (3093 perm/sec)   p_kst 1.094595e-03   p_cons 1.081784e-01   p_joint 5.351351e-04

Joint ci ratio: 2.743809e-01	ci left: 4.632624e-04	ci right 6.129461e-04	k: 203	n:380000
Cons ci ratio: 1.826108e-02	ci left: 1.071616e-01	ci right 1.091391e-01	k: 41096	n:380000
KS ci ratio: 1.918576e-01	ci left: 9.921018e-04	ci right 1.205097e-03	k: 416	n:380000
DKK2   380000 perm   124 sec   (3060 perm/sec)   p_kst 1.094737e-03   p_cons 1.081474e-01   p_joint 5.342105e-04

Joint ci ratio: 2.697906e-01	ci left: 4.681085e-04	ci right 6.163994e-04	k: 210	n:390000
Cons ci ratio: 1.803180e-02	ci left: 1.071067e-01	ci right 1.090581e-01	k: 42151	n:390000
KS ci ratio: 1.893761e-01	ci left: 9.935226e-04	ci right 1.203747e-03	k: 427	n:390000
DKK2   390000 perm   129 sec   (3028 perm/sec)   p_kst 1.094872e-03   p_cons 1.080795e-01   p_joint 5.384615e-04

Joint ci ratio: 2.691550e-01	ci left: 4.587365e-04	ci right 6.036583e-04	k: 211	n:400000
Cons ci ratio: 1.780562e-02	ci left: 1.071119e-01	ci right 1.090387e-01	k: 43229	n:400000
KS ci ratio: 1.874163e-01	ci left: 9.901232e-04	ci right 1.197213e-03	k: 436	n:400000
DKK2   400000 perm   133 sec   (2997 perm/sec)   p_kst 1.090000e-03   p_cons 1.080725e-01   p_joint 5.275000e-04

Joint ci ratio: 2.685239e-01	ci left: 4.498222e-04	ci right 5.915384e-04	k: 212	n:410000
Cons ci ratio: 1.759599e-02	ci left: 1.070272e-01	ci right 1.089296e-01	k: 44270	n:410000
KS ci ratio: 1.851012e-01	ci left: 9.915522e-04	ci right 1.196092e-03	k: 447	n:410000
DKK2   410000 perm   138 sec   (2966 perm/sec)   p_kst 1.090244e-03   p_cons 1.079756e-01   p_joint 5.170732e-04

Joint ci ratio: 2.660379e-01	ci left: 4.479978e-04	ci right 5.876148e-04	k: 216	n:420000
Cons ci ratio: 1.737941e-02	ci left: 1.071032e-01	ci right 1.089832e-01	k: 45377	n:420000
KS ci ratio: 1.836726e-01	ci left: 9.838409e-04	ci right 1.185049e-03	k: 454	n:420000
DKK2   420000 perm   143 sec   (2935 perm/sec)   p_kst 1.080952e-03   p_cons 1.080405e-01   p_joint 5.142857e-04

Joint ci ratio: 2.672746e-01	ci left: 4.332385e-04	ci right 5.689886e-04	k: 214	n:430000
Cons ci ratio: 1.716566e-02	ci left: 1.072313e-01	ci right 1.090902e-01	k: 46508	n:430000
KS ci ratio: 1.809098e-01	ci left: 9.920338e-04	ci right 1.191531e-03	k: 468	n:430000
DKK2   430000 perm   148 sec   (2904 perm/sec)   p_kst 1.088372e-03   p_cons 1.081581e-01   p_joint 4.976744e-04

Joint ci ratio: 5.334111e-01	ci left: 9.022998e-05	ci right 1.575546e-04	k: 53	n:440000
Cons ci ratio: 1.697360e-02	ci left: 1.071953e-01	ci right 1.090326e-01	k: 47569	n:440000
KS ci ratio: 1.846958e-01	ci left: 9.282786e-04	ci right 1.119299e-03	k: 449	n:440000
DKK2   440000 perm   153 sec   (2874 perm/sec)   p_kst 1.020455e-03   p_cons 1.081114e-01   p_joint 1.204545e-04

Joint ci ratio: 5.285398e-01	ci left: 9.014894e-05	ci right 1.565711e-04	k: 54	n:450000
Cons ci ratio: 1.679752e-02	ci left: 1.070503e-01	ci right 1.088659e-01	k: 48580	n:450000
KS ci ratio: 1.834776e-01	ci left: 9.203688e-04	ci right 1.108373e-03	k: 455	n:450000
DKK2   450000 perm   158 sec   (2845 perm/sec)   p_kst 1.011111e-03   p_cons 1.079556e-01   p_joint 1.200000e-04

Joint ci ratio: 5.285405e-01	ci left: 8.818915e-05	ci right 1.531674e-04	k: 54	n:460000
Cons ci ratio: 1.661873e-02	ci left: 1.070048e-01	ci right 1.088001e-01	k: 49634	n:460000
KS ci ratio: 1.822831e-01	ci left: 9.128068e-04	ci right 1.097919e-03	k: 461	n:460000
DKK2   460000 perm   163 sec   (2816 perm/sec)   p_kst 1.002174e-03   p_cons 1.079000e-01   p_joint 1.173913e-04

Joint ci ratio: 5.191846e-01	ci left: 9.000504e-05	ci right 1.547221e-04	k: 56	n:470000
Cons ci ratio: 1.645063e-02	ci left: 1.069020e-01	ci right 1.086773e-01	k: 50660	n:470000
KS ci ratio: 1.803418e-01	ci left: 9.136964e-04	ci right 1.096800e-03	k: 471	n:470000
DKK2   470000 perm   169 sec   (2788 perm/sec)   p_kst 1.002128e-03   p_cons 1.077872e-01   p_joint 1.191489e-04

Joint ci ratio: 5.191853e-01	ci left: 8.812991e-05	ci right 1.514987e-04	k: 56	n:480000
Cons ci ratio: 1.628241e-02	ci left: 1.068638e-01	ci right 1.086201e-01	k: 51715	n:480000
KS ci ratio: 1.782762e-01	ci left: 9.165493e-04	ci right 1.097894e-03	k: 482	n:480000
DKK2   480000 perm   174 sec   (2761 perm/sec)   p_kst 1.004167e-03   p_cons 1.077396e-01   p_joint 1.166667e-04

Joint ci ratio: 5.285425e-01	ci left: 8.278975e-05	ci right 1.437900e-04	k: 54	n:490000
Cons ci ratio: 1.610863e-02	ci left: 1.069533e-01	ci right 1.086922e-01	k: 52832	n:490000
KS ci ratio: 1.762800e-01	ci left: 9.192971e-04	ci right 1.098932e-03	k: 493	n:490000
DKK2   490000 perm   179 sec   (2734 perm/sec)   p_kst 1.006122e-03   p_cons 1.078204e-01   p_joint 1.102041e-04

Joint ci ratio: 5.285431e-01	ci left: 8.113393e-05	ci right 1.409143e-04	k: 54	n:500000
Cons ci ratio: 1.594578e-02	ci left: 1.069735e-01	ci right 1.086950e-01	k: 53916	n:500000
KS ci ratio: 1.748701e-01	ci left: 9.162079e-04	ci right 1.093656e-03	k: 501	n:500000
DKK2   500000 perm   185 sec   (2708 perm/sec)   p_kst 1.002000e-03   p_cons 1.078320e-01   p_joint 1.080000e-04

Joint ci ratio: 2.929428e-01	ci left: 2.996355e-04	ci right 4.042172e-04	k: 178	n:510000
Cons ci ratio: 1.579307e-02	ci left: 1.069286e-01	ci right 1.086327e-01	k: 54967	n:510000
KS ci ratio: 1.731540e-01	ci left: 9.169970e-04	ci right 1.092673e-03	k: 511	n:510000
DKK2   510000 perm   190 sec   (2683 perm/sec)   p_kst 1.001961e-03   p_cons 1.077784e-01   p_joint 3.490196e-04

Joint ci ratio: 2.897235e-01	ci left: 3.010035e-04	ci right 4.046966e-04	k: 182	n:520000
Cons ci ratio: 1.564577e-02	ci left: 1.068721e-01	ci right 1.085592e-01	k: 56011	n:520000
KS ci ratio: 1.718172e-01	ci left: 9.140827e-04	ci right 1.087708e-03	k: 519	n:520000
DKK2   520000 perm   196 sec   (2657 perm/sec)   p_kst 9.980769e-04   p_cons 1.077135e-01   p_joint 3.500000e-04

Joint ci ratio: 2.913213e-01	ci left: 2.918254e-04	ci right 3.930133e-04	k: 180	n:530000
Cons ci ratio: 1.549840e-02	ci left: 1.068685e-01	ci right 1.085396e-01	k: 57082	n:530000
KS ci ratio: 1.705109e-01	ci left: 9.112835e-04	ci right 1.082926e-03	k: 527	n:530000
DKK2   530000 perm   201 sec   (2632 perm/sec)   p_kst 9.943396e-04   p_cons 1.077019e-01   p_joint 3.396226e-04

Joint ci ratio: 2.889367e-01	ci left: 2.915725e-04	ci right 3.916940e-04	k: 183	n:540000
Cons ci ratio: 1.535453e-02	ci left: 1.068725e-01	ci right 1.085280e-01	k: 58157	n:540000
KS ci ratio: 1.678294e-01	ci left: 9.245571e-04	ci right 1.095684e-03	k: 544	n:540000
DKK2   540000 perm   207 sec   (2608 perm/sec)   p_kst 1.007407e-03   p_cons 1.076981e-01   p_joint 3.388889e-04

Joint ci ratio: 2.866098e-01	ci left: 2.913321e-04	ci right 3.904195e-04	k: 186	n:550000
Cons ci ratio: 1.521186e-02	ci left: 1.069109e-01	ci right 1.085514e-01	k: 59251	n:550000
KS ci ratio: 1.655657e-01	ci left: 9.338823e-04	ci right 1.104171e-03	k: 559	n:550000
DKK2   550000 perm   213 sec   (2583 perm/sec)   p_kst 1.016364e-03   p_cons 1.077291e-01   p_joint 3.381818e-04

Joint ci ratio: 2.850897e-01	ci left: 2.894451e-04	ci right 3.872746e-04	k: 188	n:560000
Cons ci ratio: 1.507211e-02	ci left: 1.069604e-01	ci right 1.085865e-01	k: 60352	n:560000
KS ci ratio: 1.643960e-01	ci left: 9.309016e-04	ci right 1.099329e-03	k: 567	n:560000
DKK2   560000 perm   219 sec   (2558 perm/sec)   p_kst 1.012500e-03   p_cons 1.077714e-01   p_joint 3.357143e-04

Joint ci ratio: 2.913248e-01	ci left: 2.713460e-04	ci right 3.654341e-04	k: 180	n:570000
Cons ci ratio: 1.494159e-02	ci left: 1.069383e-01	ci right 1.085499e-01	k: 61413	n:570000
KS ci ratio: 1.628267e-01	ci left: 9.330781e-04	ci right 1.100130e-03	k: 578	n:570000
DKK2   570000 perm   225 sec   (2534 perm/sec)   p_kst 1.014035e-03   p_cons 1.077421e-01   p_joint 3.157895e-04

Joint ci ratio: 2.889401e-01	ci left: 2.714636e-04	ci right 3.646813e-04	k: 183	n:580000
Cons ci ratio: 1.481016e-02	ci left: 1.069720e-01	ci right 1.085698e-01	k: 62506	n:580000
KS ci ratio: 1.621289e-01	ci left: 9.252604e-04	ci right 1.090134e-03	k: 583	n:580000
DKK2   580000 perm   231 sec   (2511 perm/sec)   p_kst 1.005172e-03   p_cons 1.077690e-01   p_joint 3.155172e-04

Joint ci ratio: 2.835951e-01	ci left: 2.778754e-04	ci right 3.712139e-04	k: 190	n:590000
Cons ci ratio: 1.468265e-02	ci left: 1.069979e-01	ci right 1.085822e-01	k: 63595	n:590000
KS ci ratio: 1.607584e-01	ci left: 9.258425e-04	ci right 1.089290e-03	k: 593	n:590000
DKK2   590000 perm   237 sec   (2488 perm/sec)   p_kst 1.005085e-03   p_cons 1.077881e-01   p_joint 3.220339e-04

Joint ci ratio: 2.813939e-01	ci left: 2.778900e-04	ci right 3.703803e-04	k: 193	n:600000
Cons ci ratio: 1.456305e-02	ci left: 1.069615e-01	ci right 1.085323e-01	k: 64647	n:600000
KS ci ratio: 1.596870e-01	ci left: 9.232104e-04	ci right 1.085003e-03	k: 601	n:600000
DKK2   600000 perm   243 sec   (2466 perm/sec)   p_kst 1.001667e-03   p_cons 1.077450e-01   p_joint 3.216667e-04

Joint ci ratio: 2.799548e-01	ci left: 2.763823e-04	ci right 3.678174e-04	k: 195	n:610000
Cons ci ratio: 1.444509e-02	ci left: 1.069427e-01	ci right 1.085004e-01	k: 65709	n:610000
KS ci ratio: 1.586367e-01	ci left: 9.206681e-04	ci right 1.080853e-03	k: 609	n:610000
DKK2   610000 perm   250 sec   (2444 perm/sec)   p_kst 9.983607e-04   p_cons 1.077197e-01   p_joint 3.196721e-04

Joint ci ratio: 2.764504e-01	ci left: 2.794266e-04	ci right 3.705104e-04	k: 200	n:620000
Cons ci ratio: 1.432887e-02	ci left: 1.069390e-01	ci right 1.084840e-01	k: 66780	n:620000
KS ci ratio: 1.567208e-01	ci left: 9.290579e-04	ci right 1.088567e-03	k: 624	n:620000
DKK2   620000 perm   256 sec   (2423 perm/sec)   p_kst 1.006452e-03   p_cons 1.077097e-01   p_joint 3.225806e-04

Joint ci ratio: 2.737399e-01	ci left: 2.809026e-04	ci right 3.714153e-04	k: 204	n:630000
Cons ci ratio: 1.421788e-02	ci left: 1.069023e-01	ci right 1.084347e-01	k: 67830	n:630000
KS ci ratio: 1.558509e-01	ci left: 9.249873e-04	ci right 1.082834e-03	k: 631	n:630000
DKK2   630000 perm   262 sec   (2401 perm/sec)   p_kst 1.001587e-03   p_cons 1.076667e-01   p_joint 3.238095e-04

Joint ci ratio: 2.724146e-01	ci left: 2.794245e-04	ci right 3.689505e-04	k: 206	n:640000
Cons ci ratio: 1.410736e-02	ci left: 1.068948e-01	ci right 1.084150e-01	k: 68898	n:640000
KS ci ratio: 1.547530e-01	ci left: 9.240504e-04	ci right 1.080523e-03	k: 640	n:640000
DKK2   640000 perm   269 sec   (2380 perm/sec)   p_kst 1.000000e-03   p_cons 1.076531e-01   p_joint 3.218750e-04

Joint ci ratio: 2.691826e-01	ci left: 2.822958e-04	ci right 3.714875e-04	k: 211	n:650000
Cons ci ratio: 1.399748e-02	ci left: 1.069136e-01	ci right 1.084222e-01	k: 69983	n:650000
KS ci ratio: 1.537965e-01	ci left: 9.216667e-04	ci right 1.076682e-03	k: 648	n:650000
DKK2   650000 perm   276 sec   (2359 perm/sec)   p_kst 9.969231e-04   p_cons 1.076662e-01   p_joint 3.246154e-04

Joint ci ratio: 2.672980e-01	ci left: 2.822584e-04	ci right 3.707093e-04	k: 214	n:660000
Cons ci ratio: 1.388946e-02	ci left: 1.069410e-01	ci right 1.084382e-01	k: 71074	n:660000
KS ci ratio: 1.529741e-01	ci left: 9.179009e-04	ci right 1.071382e-03	k: 655	n:660000
DKK2   660000 perm   282 sec   (2339 perm/sec)   p_kst 9.924242e-04   p_cons 1.076879e-01   p_joint 3.242424e-04

Joint ci ratio: 2.666790e-01	ci left: 2.794382e-04	ci right 3.667686e-04	k: 215	n:670000
Cons ci ratio: 1.378691e-02	ci left: 1.069259e-01	ci right 1.084118e-01	k: 72137	n:670000
KS ci ratio: 1.513670e-01	ci left: 9.243010e-04	ci right 1.077081e-03	k: 669	n:670000
DKK2   670000 perm   289 sec   (2317 perm/sec)   p_kst 9.985075e-04   p_cons 1.076672e-01   p_joint 3.208955e-04

Joint ci ratio: 2.660643e-01	ci left: 2.767011e-04	ci right 3.629436e-04	k: 216	n:680000
Cons ci ratio: 1.368711e-02	ci left: 1.069040e-01	ci right 1.083787e-01	k: 73195	n:680000
KS ci ratio: 1.502498e-01	ci left: 9.248593e-04	ci right 1.076502e-03	k: 679	n:680000
DKK2   680000 perm   296 sec   (2296 perm/sec)   p_kst 9.985294e-04   p_cons 1.076397e-01   p_joint 3.176471e-04

Joint ci ratio: 2.724178e-01	ci left: 2.591760e-04	ci right 3.422155e-04	k: 206	n:690000
Cons ci ratio: 1.358679e-02	ci left: 1.069203e-01	ci right 1.083844e-01	k: 74279	n:690000
KS ci ratio: 1.487262e-01	ci left: 9.309867e-04	ci right 1.081949e-03	k: 693	n:690000
DKK2   690000 perm   303 sec   (2276 perm/sec)   p_kst 1.004348e-03   p_cons 1.076507e-01   p_joint 2.985507e-04

Joint ci ratio: 2.724184e-01	ci left: 2.554734e-04	ci right 3.373268e-04	k: 206	n:700000
Cons ci ratio: 1.349065e-02	ci left: 1.069078e-01	ci right 1.083612e-01	k: 75343	n:700000
KS ci ratio: 1.473522e-01	ci left: 9.355706e-04	ci right 1.085751e-03	k: 706	n:700000
DKK2   700000 perm   310 sec   (2256 perm/sec)   p_kst 1.008571e-03   p_cons 1.076329e-01   p_joint 2.942857e-04

Joint ci ratio: 2.704655e-01	ci left: 2.558130e-04	ci right 3.370879e-04	k: 209	n:710000
Cons ci ratio: 1.339652e-02	ci left: 1.068956e-01	ci right 1.083386e-01	k: 76407	n:710000
KS ci ratio: 1.459142e-01	ci left: 9.413887e-04	ci right 1.090900e-03	k: 720	n:710000
DKK2   710000 perm   317 sec   (2237 perm/sec)   p_kst 1.014085e-03   p_cons 1.076155e-01   p_joint 2.943662e-04

Joint ci ratio: 2.691869e-01	ci left: 2.548499e-04	ci right 3.353714e-04	k: 211	n:720000
Cons ci ratio: 1.330386e-02	ci left: 1.068907e-01	ci right 1.083236e-01	k: 77476	n:720000
KS ci ratio: 1.447147e-01	ci left: 9.443746e-04	ci right 1.093020e-03	k: 732	n:720000
DKK2   720000 perm   325 sec   (2217 perm/sec)   p_kst 1.016667e-03   p_cons 1.076056e-01   p_joint 2.930556e-04

Joint ci ratio: 2.648491e-01	ci left: 2.603061e-04	ci right 3.410065e-04	k: 218	n:730000
Cons ci ratio: 1.320866e-02	ci left: 1.069501e-01	ci right 1.083735e-01	k: 78592	n:730000
KS ci ratio: 1.437375e-01	ci left: 9.446423e-04	ci right 1.092240e-03	k: 742	n:730000
DKK2   730000 perm   332 sec   (2198 perm/sec)   p_kst 1.016438e-03   p_cons 1.076603e-01   p_joint 2.986301e-04

Joint ci ratio: 2.897387e-01	ci left: 2.115145e-04	ci right 2.843837e-04	k: 182	n:740000
Cons ci ratio: 1.311299e-02	ci left: 1.070444e-01	ci right 1.084587e-01	k: 79735	n:740000
KS ci ratio: 1.432568e-01	ci left: 9.383908e-04	ci right 1.084480e-03	k: 747	n:740000
DKK2   740000 perm   339 sec   (2181 perm/sec)   p_kst 1.009459e-03   p_cons 1.077500e-01   p_joint 2.459459e-04

Joint ci ratio: 2.873925e-01	ci left: 2.124049e-04	ci right 2.848806e-04	k: 185	n:750000
Cons ci ratio: 1.303174e-02	ci left: 1.069541e-01	ci right 1.083583e-01	k: 80741	n:750000
KS ci ratio: 1.424028e-01	ci left: 9.374501e-04	ci right 1.082448e-03	k: 756	n:750000
DKK2   750000 perm   347 sec   (2164 perm/sec)   p_kst 1.008000e-03   p_cons 1.076547e-01   p_joint 2.466667e-04

Joint ci ratio: 2.851024e-01	ci left: 2.132741e-04	ci right 2.853621e-04	k: 188	n:760000
Cons ci ratio: 1.294745e-02	ci left: 1.069330e-01	ci right 1.083279e-01	k: 81798	n:760000
KS ci ratio: 1.411036e-01	ci left: 9.428831e-04	ci right 1.087279e-03	k: 770	n:760000
DKK2   760000 perm   354 sec   (2147 perm/sec)   p_kst 1.013158e-03   p_cons 1.076289e-01   p_joint 2.473684e-04

Joint ci ratio: 2.828662e-01	ci left: 2.141230e-04	ci right 2.858290e-04	k: 191	n:770000
Cons ci ratio: 1.286417e-02	ci left: 1.069216e-01	ci right 1.083073e-01	k: 82862	n:770000
KS ci ratio: 1.399286e-01	ci left: 9.469276e-04	ci right 1.090635e-03	k: 783	n:770000
DKK2   770000 perm   361 sec   (2131 perm/sec)   p_kst 1.016883e-03   p_cons 1.076130e-01   p_joint 2.480519e-04

Joint ci ratio: 2.821327e-01	ci left: 2.125690e-04	ci right 2.835372e-04	k: 192	n:780000
Cons ci ratio: 1.278291e-02	ci left: 1.069042e-01	ci right 1.082808e-01	k: 83921	n:780000
KS ci ratio: 1.393966e-01	ci left: 9.422109e-04	ci right 1.084614e-03	k: 789	n:780000
DKK2   780000 perm   369 sec   (2114 perm/sec)   p_kst 1.011538e-03   p_cons 1.075910e-01   p_joint 2.461538e-04

Joint ci ratio: 2.799651e-01	ci left: 2.134081e-04	ci right 2.840125e-04	k: 195	n:790000
Cons ci ratio: 1.270015e-02	ci left: 1.069326e-01	ci right 1.083006e-01	k: 85016	n:790000
KS ci ratio: 1.388706e-01	ci left: 9.376146e-04	ci right 1.078744e-03	k: 795	n:790000
DKK2   790000 perm   377 sec   (2098 perm/sec)   p_kst 1.006329e-03   p_cons 1.076152e-01   p_joint 2.468354e-04

Joint ci ratio: 2.785476e-01	ci left: 2.130655e-04	ci right 2.831369e-04	k: 197	n:800000
Cons ci ratio: 1.261930e-02	ci left: 1.069554e-01	ci right 1.083149e-01	k: 86107	n:800000
KS ci ratio: 1.382643e-01	ci left: 9.343409e-04	ci right 1.074313e-03	k: 802	n:800000
DKK2   800000 perm   384 sec   (2082 perm/sec)   p_kst 1.002500e-03   p_cons 1.076338e-01   p_joint 2.462500e-04

Joint ci ratio: 2.785480e-01	ci left: 2.104350e-04	ci right 2.796415e-04	k: 197	n:810000
Cons ci ratio: 1.254087e-02	ci left: 1.069641e-01	ci right 1.083152e-01	k: 87187	n:810000
KS ci ratio: 1.377509e-01	ci left: 9.299574e-04	ci right 1.068713e-03	k: 808	n:810000
DKK2   810000 perm   392 sec   (2066 perm/sec)   p_kst 9.975309e-04   p_cons 1.076383e-01   p_joint 2.432099e-04

Joint ci ratio: 2.757761e-01	ci left: 2.124078e-04	ci right 2.814474e-04	k: 201	n:820000
Cons ci ratio: 1.246539e-02	ci left: 1.069495e-01	ci right 1.082923e-01	k: 88248	n:820000
KS ci ratio: 1.366571e-01	ci left: 9.339260e-04	ci right 1.072077e-03	k: 821	n:820000
DKK2   820000 perm   400 sec   (2050 perm/sec)   p_kst 1.001220e-03   p_cons 1.076195e-01   p_joint 2.451220e-04

Joint ci ratio: 2.799668e-01	ci left: 2.031232e-04	ci right 2.703254e-04	k: 195	n:830000
Cons ci ratio: 1.239187e-02	ci left: 1.069257e-01	ci right 1.082602e-01	k: 89301	n:830000
KS ci ratio: 1.357517e-01	ci left: 9.354754e-04	ci right 1.072865e-03	k: 832	n:830000
DKK2   830000 perm   408 sec   (2035 perm/sec)   p_kst 1.002410e-03   p_cons 1.075916e-01   p_joint 2.349398e-04

Joint ci ratio: 2.778483e-01	ci left: 2.040268e-04	ci right 2.709278e-04	k: 198	n:840000
Cons ci ratio: 1.231185e-02	ci left: 1.070236e-01	ci right 1.083506e-01	k: 90456	n:840000
KS ci ratio: 1.350243e-01	ci left: 9.346901e-04	ci right 1.071169e-03	k: 841	n:840000
DKK2   840000 perm   416 sec   (2020 perm/sec)   p_kst 1.001190e-03   p_cons 1.076857e-01   p_joint 2.357143e-04

Joint ci ratio: 2.737515e-01	ci left: 2.081973e-04	ci right 2.752860e-04	k: 204	n:850000
Cons ci ratio: 1.223786e-02	ci left: 1.070488e-01	ci right 1.083680e-01	k: 91551	n:850000
KS ci ratio: 1.339937e-01	ci left: 9.384734e-04	ci right 1.074376e-03	k: 854	n:850000
DKK2   850000 perm   424 sec   (2004 perm/sec)   p_kst 1.004706e-03   p_cons 1.077071e-01   p_joint 2.400000e-04

Joint ci ratio: 2.764630e-01	ci left: 2.014459e-04	ci right 2.671140e-04	k: 200	n:860000
Cons ci ratio: 1.216386e-02	ci left: 1.070943e-01	ci right 1.084061e-01	k: 92664	n:860000
KS ci ratio: 1.334487e-01	ci left: 9.354280e-04	ci right 1.070295e-03	k: 861	n:860000
DKK2   860000 perm   433 sec   (1987 perm/sec)   p_kst 1.001163e-03   p_cons 1.077488e-01   p_joint 2.325581e-04

Joint ci ratio: 2.757781e-01	ci left: 2.002003e-04	ci right 2.652725e-04	k: 201	n:870000
Cons ci ratio: 1.209277e-02	ci left: 1.071135e-01	ci right 1.084178e-01	k: 93755	n:870000
KS ci ratio: 1.325293e-01	ci left: 9.380103e-04	ci right 1.072244e-03	k: 873	n:870000
DKK2   870000 perm   441 sec   (1972 perm/sec)   p_kst 1.003448e-03   p_cons 1.077644e-01   p_joint 2.310345e-04

Joint ci ratio: 2.971449e-01	ci left: 1.683892e-04	ci right 2.281639e-04	k: 173	n:880000
Cons ci ratio: 1.202384e-02	ci left: 1.071176e-01	ci right 1.084145e-01	k: 94833	n:880000
KS ci ratio: 1.314801e-01	ci left: 9.427349e-04	ci right 1.076494e-03	k: 887	n:880000
DKK2   880000 perm   449 sec   (1958 perm/sec)   p_kst 1.007955e-03   p_cons 1.077648e-01   p_joint 1.965909e-04

Joint ci ratio: 2.980029e-01	ci left: 1.654575e-04	ci right 2.243931e-04	k: 172	n:890000
Cons ci ratio: 1.195496e-02	ci left: 1.071396e-01	ci right 1.084292e-01	k: 95927	n:890000
KS ci ratio: 1.303110e-01	ci left: 9.495315e-04	ci right 1.082964e-03	k: 903	n:890000
DKK2   890000 perm   458 sec   (1944 perm/sec)   p_kst 1.014607e-03   p_cons 1.077831e-01   p_joint 1.932584e-04

Joint ci ratio: 3.015100e-01	ci left: 1.595087e-04	ci right 2.171223e-04	k: 168	n:900000
Cons ci ratio: 1.188642e-02	ci left: 1.071744e-01	ci right 1.084570e-01	k: 97033	n:900000
KS ci ratio: 1.293838e-01	ci left: 9.529565e-04	ci right 1.085844e-03	k: 916	n:900000
DKK2   900000 perm   466 sec   (1929 perm/sec)   p_kst 1.017778e-03   p_cons 1.078144e-01   p_joint 1.866667e-04

Joint ci ratio: 2.980036e-01	ci left: 1.618210e-04	ci right 2.194615e-04	k: 172	n:910000
Cons ci ratio: 1.182567e-02	ci left: 1.071010e-01	ci right 1.083762e-01	k: 98041	n:910000
KS ci ratio: 1.286146e-01	ci left: 9.541823e-04	ci right 1.086390e-03	k: 927	n:910000
DKK2   910000 perm   475 sec   (1915 perm/sec)   p_kst 1.018681e-03   p_cons 1.077374e-01   p_joint 1.890110e-04

Joint ci ratio: 2.962958e-01	ci left: 1.620739e-04	ci right 2.194115e-04	k: 174	n:920000
Cons ci ratio: 1.176019e-02	ci left: 1.071214e-01	ci right 1.083897e-01	k: 99134	n:920000
KS ci ratio: 1.278590e-01	ci left: 9.553837e-04	ci right 1.086921e-03	k: 938	n:920000
DKK2   920000 perm   484 sec   (1901 perm/sec)   p_kst 1.019565e-03   p_cons 1.077543e-01   p_joint 1.891304e-04

Joint ci ratio: 2.929662e-01	ci left: 1.643145e-04	ci right 2.216703e-04	k: 178	n:930000
Cons ci ratio: 1.169421e-02	ci left: 1.071672e-01	ci right 1.084288e-01	k: 100251	n:930000
KS ci ratio: 1.267166e-01	ci left: 9.628086e-04	ci right 1.094095e-03	k: 955	n:930000
DKK2   930000 perm   493 sec   (1887 perm/sec)   p_kst 1.026882e-03   p_cons 1.077968e-01   p_joint 1.913978e-04

Joint ci ratio: 2.929665e-01	ci left: 1.625664e-04	ci right 2.193121e-04	k: 178	n:940000
Cons ci ratio: 1.163448e-02	ci left: 1.071271e-01	ci right 1.083818e-01	k: 101288	n:940000
KS ci ratio: 1.262554e-01	ci left: 9.597770e-04	ci right 1.090138e-03	k: 962	n:940000
DKK2   940000 perm   502 sec   (1873 perm/sec)   p_kst 1.023404e-03   p_cons 1.077532e-01   p_joint 1.893617e-04

Joint ci ratio: 2.897467e-01	ci left: 1.647581e-04	ci right 2.215209e-04	k: 182	n:950000
Cons ci ratio: 1.157166e-02	ci left: 1.071539e-01	ci right 1.084021e-01	k: 102388	n:950000
KS ci ratio: 1.255404e-01	ci left: 9.608884e-04	ci right 1.090606e-03	k: 973	n:950000
DKK2   950000 perm   511 sec   (1861 perm/sec)   p_kst 1.024211e-03   p_cons 1.077768e-01   p_joint 1.915789e-04

Joint ci ratio: 2.874003e-01	ci left: 1.659407e-04	ci right 2.225639e-04	k: 185	n:960000
Cons ci ratio: 1.150923e-02	ci left: 1.071907e-01	ci right 1.084325e-01	k: 103498	n:960000
KS ci ratio: 1.248374e-01	ci left: 9.619787e-04	ci right 1.091062e-03	k: 984	n:960000
DKK2   960000 perm   520 sec   (1847 perm/sec)   p_kst 1.025000e-03   p_cons 1.078104e-01   p_joint 1.927083e-04

Joint ci ratio: 2.851101e-01	ci left: 1.671008e-04	ci right 2.235836e-04	k: 188	n:970000
Cons ci ratio: 1.144742e-02	ci left: 1.072328e-01	ci right 1.084685e-01	k: 104614	n:970000
KS ci ratio: 1.241461e-01	ci left: 9.630485e-04	ci right 1.091507e-03	k: 995	n:970000
DKK2   970000 perm   529 sec   (1832 perm/sec)   p_kst 1.025773e-03   p_cons 1.078495e-01   p_joint 1.938144e-04

Joint ci ratio: 2.851104e-01	ci left: 1.653956e-04	ci right 2.213022e-04	k: 188	n:980000
Cons ci ratio: 1.138799e-02	ci left: 1.072508e-01	ci right 1.084801e-01	k: 105707	n:980000
KS ci ratio: 1.237123e-01	ci left: 9.601428e-04	ci right 1.087734e-03	k: 1002	n:980000
DKK2   980000 perm   539 sec   (1819 perm/sec)   p_kst 1.022449e-03   p_cons 1.078643e-01   p_joint 1.918367e-04

Joint ci ratio: 2.836137e-01	ci left: 1.656011e-04	ci right 2.212307e-04	k: 190	n:990000
Cons ci ratio: 1.132948e-02	ci left: 1.072683e-01	ci right 1.084915e-01	k: 106800	n:990000
KS ci ratio: 1.231611e-01	ci left: 9.592545e-04	ci right 1.086118e-03	k: 1011	n:990000
DKK2   990000 perm   548 sec   (1806 perm/sec)   p_kst 1.021212e-03   p_cons 1.078788e-01   p_joint 1.919192e-04

Joint ci ratio: 2.821404e-01	ci left: 1.658032e-04	ci right 2.211599e-04	k: 192	n:1000000
Cons ci ratio: 1.127268e-02	ci left: 1.072716e-01	ci right 1.084887e-01	k: 107879	n:1000000
KS ci ratio: 1.227979e-01	ci left: 9.554773e-04	ci right 1.081442e-03	k: 1017	n:1000000
DKK2   1000000 perm   557 sec   (1794 perm/sec)   p_kst 1.017000e-03   p_cons 1.078790e-01   p_joint 1.920000e-04

Joint ci ratio: 2.806898e-01	ci left: 1.660021e-04	ci right 2.210898e-04	k: 194	n:1010000
Cons ci ratio: 1.121961e-02	ci left: 1.072254e-01	ci right 1.084362e-01	k: 108908	n:1010000
KS ci ratio: 1.223780e-01	ci left: 9.527352e-04	ci right 1.077878e-03	k: 1024	n:1010000
DKK2   1010000 perm   567 sec   (1782 perm/sec)   p_kst 1.013861e-03   p_cons 1.078297e-01   p_joint 1.920792e-04

Joint ci ratio: 2.792613e-01	ci left: 1.661977e-04	ci right 2.210203e-04	k: 196	n:1020000
Cons ci ratio: 1.116540e-02	ci left: 1.072125e-01	ci right 1.084172e-01	k: 109970	n:1020000
KS ci ratio: 1.217265e-01	ci left: 9.538498e-04	ci right 1.078423e-03	k: 1035	n:1020000
DKK2   1020000 perm   576 sec   (1771 perm/sec)   p_kst 1.014706e-03   p_cons 1.078137e-01   p_joint 1.921569e-04

Joint ci ratio: 2.806903e-01	ci left: 1.627787e-04	ci right 2.167968e-04	k: 194	n:1030000
Cons ci ratio: 1.111186e-02	ci left: 1.072017e-01	ci right 1.084005e-01	k: 111034	n:1030000
KS ci ratio: 1.210854e-01	ci left: 9.549444e-04	ci right 1.078957e-03	k: 1046	n:1030000
DKK2   1030000 perm   586 sec   (1759 perm/sec)   p_kst 1.015534e-03   p_cons 1.078000e-01   p_joint 1.883495e-04

Joint ci ratio: 3.070139e-01	ci left: 1.327072e-04	ci right 1.816865e-04	k: 162	n:1040000
Cons ci ratio: 1.106163e-02	ci left: 1.071470e-01	ci right 1.083398e-01	k: 112052	n:1040000
KS ci ratio: 1.203404e-01	ci left: 9.578849e-04	ci right 1.081460e-03	k: 1059	n:1040000
DKK2   1040000 perm   595 sec   (1748 perm/sec)   p_kst 1.018269e-03   p_cons 1.077423e-01   p_joint 1.557692e-04

Joint ci ratio: 3.051475e-01	ci left: 1.332018e-04	ci right 1.820068e-04	k: 164	n:1050000
Cons ci ratio: 1.101234e-02	ci left: 1.070887e-01	ci right 1.082754e-01	k: 113065	n:1050000
KS ci ratio: 1.197208e-01	ci left: 9.589239e-04	ci right 1.081951e-03	k: 1070	n:1050000
DKK2   1050000 perm   605 sec   (1737 perm/sec)   p_kst 1.019048e-03   p_cons 1.076810e-01   p_joint 1.561905e-04

Joint ci ratio: 3.118351e-01	ci left: 1.258524e-04	ci right 1.731765e-04	k: 157	n:1060000
Cons ci ratio: 1.095828e-02	ci left: 1.071265e-01	ci right 1.083078e-01	k: 114179	n:1060000
KS ci ratio: 1.190556e-01	ci left: 9.608601e-04	ci right 1.083402e-03	k: 1082	n:1060000
DKK2   1060000 perm   614 sec   (1725 perm/sec)   p_kst 1.020755e-03   p_cons 1.077160e-01   p_joint 1.481132e-04

Joint ci ratio: 3.128270e-01	ci left: 1.238149e-04	ci right 1.705505e-04	k: 156	n:1070000
Cons ci ratio: 1.090706e-02	ci left: 1.071272e-01	ci right 1.083030e-01	k: 115254	n:1070000
KS ci ratio: 1.182393e-01	ci left: 9.654829e-04	ci right 1.087711e-03	k: 1097	n:1070000
DKK2   1070000 perm   625 sec   (1713 perm/sec)   p_kst 1.025234e-03   p_cons 1.077140e-01   p_joint 1.457944e-04

Joint ci ratio: 3.108532e-01	ci left: 1.243754e-04	ci right 1.709676e-04	k: 158	n:1080000
Cons ci ratio: 1.085478e-02	ci left: 1.071593e-01	ci right 1.083298e-01	k: 116363	n:1080000
KS ci ratio: 1.178643e-01	ci left: 9.628333e-04	ci right 1.084313e-03	k: 1104	n:1080000
DKK2   1080000 perm   635 sec   (1701 perm/sec)   p_kst 1.022222e-03   p_cons 1.077435e-01   p_joint 1.462963e-04

Joint ci ratio: 3.108534e-01	ci left: 1.232343e-04	ci right 1.693991e-04	k: 158	n:1090000
Cons ci ratio: 1.080614e-02	ci left: 1.071397e-01	ci right 1.083046e-01	k: 117416	n:1090000
KS ci ratio: 1.174930e-01	ci left: 9.602329e-04	ci right 1.080976e-03	k: 1111	n:1090000
DKK2   1090000 perm   645 sec   (1689 perm/sec)   p_kst 1.019266e-03   p_cons 1.077211e-01   p_joint 1.449541e-04

Joint ci ratio: 3.108536e-01	ci left: 1.221140e-04	ci right 1.678592e-04	k: 158	n:1100000
Cons ci ratio: 1.075890e-02	ci left: 1.071068e-01	ci right 1.082662e-01	k: 118454	n:1100000
KS ci ratio: 1.171251e-01	ci left: 9.576803e-04	ci right 1.077699e-03	k: 1118	n:1100000
DKK2   1100000 perm   655 sec   (1679 perm/sec)   p_kst 1.016364e-03   p_cons 1.076855e-01   p_joint 1.436364e-04

Joint ci ratio: 3.098807e-01	ci left: 1.218446e-04	ci right 1.673178e-04	k: 159	n:1110000
Cons ci ratio: 1.070892e-02	ci left: 1.071347e-01	ci right 1.082890e-01	k: 119559	n:1110000
KS ci ratio: 1.163476e-01	ci left: 9.621716e-04	ci right 1.081898e-03	k: 1133	n:1110000
DKK2   1110000 perm   665 sec   (1668 perm/sec)   p_kst 1.020721e-03   p_cons 1.077108e-01   p_joint 1.432432e-04

Joint ci ratio: 2.921559e-01	ci left: 1.372667e-04	ci right 1.850241e-04	k: 179	n:1120000
Cons ci ratio: 1.044609e-02	ci left: 1.111056e-01	ci right 1.122732e-01	k: 125091	n:1120000
KS ci ratio: 1.158380e-01	ci left: 9.622501e-04	ci right 1.081426e-03	k: 1143	n:1120000
DKK2   1120000 perm   675 sec   (1658 perm/sec)   p_kst 1.020536e-03   p_cons 1.116884e-01   p_joint 1.598214e-04

Joint ci ratio: 2.913478e-01	ci left: 1.368722e-04	ci right 1.843363e-04	k: 180	n:1130000
Cons ci ratio: 1.040059e-02	ci left: 1.110924e-01	ci right 1.122547e-01	k: 126190	n:1130000
KS ci ratio: 1.154854e-01	ci left: 9.597500e-04	ci right 1.078230e-03	k: 1150	n:1130000
DKK2   1130000 perm   686 sec   (1648 perm/sec)   p_kst 1.017699e-03   p_cons 1.116726e-01   p_joint 1.592920e-04

Joint ci ratio: 2.905464e-01	ci left: 1.364847e-04	ci right 1.836604e-04	k: 181	n:1140000
Cons ci ratio: 1.035651e-02	ci left: 1.110637e-01	ci right 1.122208e-01	k: 127271	n:1140000
KS ci ratio: 1.151359e-01	ci left: 9.572943e-04	ci right 1.075089e-03	k: 1157	n:1140000
DKK2   1140000 perm   696 sec   (1638 perm/sec)   p_kst 1.014912e-03   p_cons 1.116412e-01   p_joint 1.587719e-04

Joint ci ratio: 2.866354e-01	ci left: 1.393311e-04	ci right 1.867249e-04	k: 186	n:1150000
Cons ci ratio: 1.031217e-02	ci left: 1.110511e-01	ci right 1.122030e-01	k: 128370	n:1150000
KS ci ratio: 1.142510e-01	ci left: 9.641734e-04	ci right 1.081841e-03	k: 1175	n:1150000
DKK2   1150000 perm   706 sec   (1629 perm/sec)   p_kst 1.021739e-03   p_cons 1.116261e-01   p_joint 1.617391e-04

Joint ci ratio: 2.836178e-01	ci left: 1.413317e-04	ci right 1.888094e-04	k: 190	n:1160000
Cons ci ratio: 1.026639e-02	ci left: 1.110774e-01	ci right 1.122245e-01	k: 129514	n:1160000
KS ci ratio: 1.137683e-01	ci left: 9.642364e-04	ci right 1.081381e-03	k: 1185	n:1160000
DKK2   1160000 perm   717 sec   (1619 perm/sec)   p_kst 1.021552e-03   p_cons 1.116500e-01   p_joint 1.637931e-04

Joint ci ratio: 2.828783e-01	ci left: 1.409177e-04	ci right 1.881109e-04	k: 191	n:1170000
Cons ci ratio: 1.022170e-02	ci left: 1.110939e-01	ci right 1.122362e-01	k: 130647	n:1170000
KS ci ratio: 1.133392e-01	ci left: 9.634689e-04	ci right 1.080050e-03	k: 1194	n:1170000
DKK2   1170000 perm   727 sec   (1608 perm/sec)   p_kst 1.020513e-03   p_cons 1.116641e-01   p_joint 1.632479e-04

Joint ci ratio: 2.814163e-01	ci left: 1.412985e-04	ci right 1.883312e-04	k: 193	n:1180000
Cons ci ratio: 1.018015e-02	ci left: 1.110603e-01	ci right 1.121975e-01	k: 131721	n:1180000
KS ci ratio: 1.127743e-01	ci left: 9.651858e-04	ci right 1.081354e-03	k: 1206	n:1180000
DKK2   1180000 perm   738 sec   (1598 perm/sec)   p_kst 1.022034e-03   p_cons 1.116280e-01   p_joint 1.635593e-04

Joint ci ratio: 2.305601e-01	ci left: 2.148729e-04	ci right 2.716398e-04	k: 288	n:1190000
Cons ci ratio: 1.013523e-02	ci left: 1.111027e-01	ci right 1.122353e-01	k: 132885	n:1190000
KS ci ratio: 1.121717e-01	ci left: 9.676922e-04	ci right 1.083498e-03	k: 1219	n:1190000
DKK2   1190000 perm   749 sec   (1588 perm/sec)   p_kst 1.024370e-03   p_cons 1.116681e-01   p_joint 2.420168e-04

Joint ci ratio: 2.293726e-01	ci left: 2.154383e-04	ci right 2.720199e-04	k: 291	n:1200000
Cons ci ratio: 1.009515e-02	ci left: 1.110613e-01	ci right 1.121889e-01	k: 133949	n:1200000
KS ci ratio: 1.117148e-01	ci left: 9.677281e-04	ci right 1.083035e-03	k: 1229	n:1200000
DKK2   1200000 perm   761 sec   (1577 perm/sec)   p_kst 1.024167e-03   p_cons 1.116242e-01   p_joint 2.425000e-04

Joint ci ratio: 2.278174e-01	ci left: 2.167743e-04	ci right 2.732666e-04	k: 295	n:1210000
Cons ci ratio: 1.005239e-02	ci left: 1.110824e-01	ci right 1.122054e-01	k: 135088	n:1210000
KS ci ratio: 1.113533e-01	ci left: 9.661574e-04	ci right 1.080881e-03	k: 1237	n:1210000
DKK2   1210000 perm   772 sec   (1568 perm/sec)   p_kst 1.022314e-03   p_cons 1.116430e-01   p_joint 2.438017e-04

Joint ci ratio: 2.274337e-01	ci left: 2.157704e-04	ci right 2.718930e-04	k: 296	n:1220000
Cons ci ratio: 1.001274e-02	ci left: 1.110524e-01	ci right 1.121707e-01	k: 136165	n:1220000
KS ci ratio: 1.109508e-01	ci left: 9.654100e-04	ci right 1.079603e-03	k: 1246	n:1220000
DKK2   1220000 perm   783 sec   (1559 perm/sec)   p_kst 1.021311e-03   p_cons 1.116107e-01   p_joint 2.426230e-04

Joint ci ratio: 2.255429e-01	ci left: 2.178506e-04	ci right 2.739778e-04	k: 301	n:1230000
Cons ci ratio: 9.971022e-03	ci left: 1.110733e-01	ci right 1.121871e-01	k: 137304	n:1230000
KS ci ratio: 1.103769e-01	ci left: 9.678378e-04	ci right 1.081687e-03	k: 1259	n:1230000
DKK2   1230000 perm   794 sec   (1550 perm/sec)   p_kst 1.023577e-03   p_cons 1.116293e-01   p_joint 2.447154e-04

Joint ci ratio: 2.262938e-01	ci left: 2.145721e-04	ci right 2.700643e-04	k: 299	n:1240000
Cons ci ratio: 9.929657e-03	ci left: 1.110970e-01	ci right 1.122064e-01	k: 138447	n:1240000
KS ci ratio: 1.097255e-01	ci left: 9.717965e-04	ci right 1.085394e-03	k: 1274	n:1240000
DKK2   1240000 perm   805 sec   (1540 perm/sec)   p_kst 1.027419e-03   p_cons 1.116508e-01   p_joint 2.411290e-04

Joint ci ratio: 2.262941e-01	ci left: 2.128555e-04	ci right 2.679038e-04	k: 299	n:1250000
Cons ci ratio: 9.890398e-03	ci left: 1.110884e-01	ci right 1.121934e-01	k: 139550	n:1250000
KS ci ratio: 1.090854e-01	ci left: 9.756939e-04	ci right 1.089038e-03	k: 1289	n:1250000
DKK2   1250000 perm   817 sec   (1529 perm/sec)   p_kst 1.031200e-03   p_cons 1.116400e-01   p_joint 2.392000e-04

Joint ci ratio: 2.259180e-01	ci left: 2.119148e-04	ci right 2.666161e-04	k: 300	n:1260000
Cons ci ratio: 9.852429e-03	ci left: 1.110634e-01	ci right 1.121638e-01	k: 140632	n:1260000
KS ci ratio: 1.088749e-01	ci left: 9.718103e-04	ci right 1.084472e-03	k: 1294	n:1260000
DKK2   1260000 perm   829 sec   (1521 perm/sec)   p_kst 1.026984e-03   p_cons 1.116127e-01   p_joint 2.380952e-04

Joint ci ratio: 2.240644e-01	ci left: 2.139614e-04	ci right 2.686753e-04	k: 305	n:1270000
Cons ci ratio: 9.813724e-03	ci left: 1.110623e-01	ci right 1.121584e-01	k: 141744	n:1270000
KS ci ratio: 1.083739e-01	ci left: 9.733504e-04	ci right 1.085638e-03	k: 1306	n:1270000
DKK2   1270000 perm   840 sec   (1513 perm/sec)   p_kst 1.028346e-03   p_cons 1.116094e-01   p_joint 2.401575e-04

Joint ci ratio: 2.233358e-01	ci left: 2.137647e-04	ci right 2.682262e-04	k: 307	n:1280000
Cons ci ratio: 9.776358e-03	ci left: 1.110433e-01	ci right 1.121350e-01	k: 142833	n:1280000
KS ci ratio: 1.082087e-01	ci left: 9.687863e-04	ci right 1.080366e-03	k: 1310	n:1280000
DKK2   1280000 perm   851 sec   (1504 perm/sec)   p_kst 1.023438e-03   p_cons 1.115883e-01   p_joint 2.398438e-04

Joint ci ratio: 2.244319e-01	ci left: 2.099124e-04	ci right 2.636912e-04	k: 304	n:1290000
Cons ci ratio: 9.737245e-03	ci left: 1.110687e-01	ci right 1.121563e-01	k: 143979	n:1290000
KS ci ratio: 1.077575e-01	ci left: 9.695732e-04	ci right 1.080749e-03	k: 1321	n:1290000
DKK2   1290000 perm   862 sec   (1496 perm/sec)   p_kst 1.024031e-03   p_cons 1.116116e-01   p_joint 2.356589e-04

Joint ci ratio: 2.236997e-01	ci left: 2.097498e-04	ci right 2.632875e-04	k: 306	n:1300000
Cons ci ratio: 9.699576e-03	ci left: 1.110738e-01	ci right 1.121572e-01	k: 145099	n:1300000
KS ci ratio: 1.073523e-01	ci left: 9.696003e-04	ci right 1.080334e-03	k: 1331	n:1300000
DKK2   1300000 perm   874 sec   (1488 perm/sec)   p_kst 1.023846e-03   p_cons 1.116146e-01   p_joint 2.353846e-04

Joint ci ratio: 2.236999e-01	ci left: 2.081487e-04	ci right 2.612777e-04	k: 306	n:1310000
Cons ci ratio: 9.662304e-03	ci left: 1.110796e-01	ci right 1.121588e-01	k: 146220	n:1310000
KS ci ratio: 1.068719e-01	ci left: 9.711137e-04	ci right 1.081493e-03	k: 1343	n:1310000
DKK2   1310000 perm   886 sec   (1479 perm/sec)   p_kst 1.025191e-03   p_cons 1.116183e-01   p_joint 2.335878e-04

Joint ci ratio: 2.233366e-01	ci left: 2.072869e-04	ci right 2.600982e-04	k: 307	n:1320000
Cons ci ratio: 9.626009e-03	ci left: 1.110739e-01	ci right 1.121490e-01	k: 147326	n:1320000
KS ci ratio: 1.067134e-01	ci left: 9.667061e-04	ci right 1.076411e-03	k: 1347	n:1320000
DKK2   1320000 perm   897 sec   (1471 perm/sec)   p_kst 1.020455e-03   p_cons 1.116106e-01   p_joint 2.325758e-04

Joint ci ratio: 2.226150e-01	ci left: 2.071482e-04	ci right 2.597302e-04	k: 309	n:1330000
Cons ci ratio: 9.589175e-03	ci left: 1.110879e-01	ci right 1.121590e-01	k: 148458	n:1330000
KS ci ratio: 1.062806e-01	ci left: 9.674880e-04	ci right 1.076809e-03	k: 1358	n:1330000
DKK2   1330000 perm   909 sec   (1463 perm/sec)   p_kst 1.021053e-03   p_cons 1.116226e-01   p_joint 2.323308e-04

Joint ci ratio: 2.211924e-01	ci left: 2.084215e-04	ci right 2.609426e-04	k: 313	n:1340000
Cons ci ratio: 9.553839e-03	ci left: 1.110793e-01	ci right 1.121463e-01	k: 149560	n:1340000
KS ci ratio: 1.058918e-01	ci left: 9.675326e-04	ci right 1.076434e-03	k: 1368	n:1340000
DKK2   1340000 perm   922 sec   (1453 perm/sec)   p_kst 1.020896e-03   p_cons 1.116119e-01   p_joint 2.335821e-04

Joint ci ratio: 2.244331e-01	ci left: 2.005829e-04	ci right 2.519717e-04	k: 304	n:1350000
Cons ci ratio: 9.517007e-03	ci left: 1.111100e-01	ci right 1.121732e-01	k: 150715	n:1350000
KS ci ratio: 1.055838e-01	ci left: 9.661349e-04	ci right 1.074543e-03	k: 1376	n:1350000
DKK2   1350000 perm   934 sec   (1446 perm/sec)   p_kst 1.019259e-03   p_cons 1.116407e-01   p_joint 2.251852e-04

Joint ci ratio: 2.233374e-01	ci left: 2.011902e-04	ci right 2.524484e-04	k: 307	n:1360000
Cons ci ratio: 9.482601e-03	ci left: 1.110984e-01	ci right 1.121577e-01	k: 151813	n:1360000
KS ci ratio: 1.051646e-01	ci left: 9.669060e-04	ci right 1.074943e-03	k: 1387	n:1360000
DKK2   1360000 perm   946 sec   (1438 perm/sec)   p_kst 1.019853e-03   p_cons 1.116272e-01   p_joint 2.257353e-04

Joint ci ratio: 2.226158e-01	ci left: 2.011000e-04	ci right 2.521469e-04	k: 309	n:1370000
Cons ci ratio: 9.446931e-03	ci left: 1.111213e-01	ci right 1.121767e-01	k: 152958	n:1370000
KS ci ratio: 1.047878e-01	ci left: 9.669560e-04	ci right 1.074587e-03	k: 1397	n:1370000
DKK2   1370000 perm   958 sec   (1430 perm/sec)   p_kst 1.019708e-03   p_cons 1.116482e-01   p_joint 2.255474e-04

Joint ci ratio: 2.363613e-01	ci left: 1.757368e-04	ci right 2.235036e-04	k: 274	n:1380000
Cons ci ratio: 9.411214e-03	ci left: 1.111532e-01	ci right 1.122049e-01	k: 154116	n:1380000
KS ci ratio: 1.044521e-01	ci left: 9.663001e-04	ci right 1.073493e-03	k: 1406	n:1380000
DKK2   1380000 perm   971 sec   (1421 perm/sec)   p_kst 1.018841e-03   p_cons 1.116783e-01   p_joint 1.985507e-04

Joint ci ratio: 2.350824e-01	ci left: 1.765033e-04	ci right 2.241812e-04	k: 277	n:1390000
Cons ci ratio: 9.377530e-03	ci left: 1.111502e-01	ci right 1.121982e-01	k: 155226	n:1390000
KS ci ratio: 1.040462e-01	ci left: 9.670557e-04	ci right 1.073890e-03	k: 1417	n:1390000
DKK2   1390000 perm   983 sec   (1414 perm/sec)   p_kst 1.019424e-03   p_cons 1.116734e-01   p_joint 1.992806e-04

Joint ci ratio: 2.346608e-01	ci left: 1.759148e-04	ci right 2.233361e-04	k: 278	n:1400000
Cons ci ratio: 9.343130e-03	ci left: 1.111701e-01	ci right 1.122144e-01	k: 156368	n:1400000
KS ci ratio: 1.036449e-01	ci left: 9.678012e-04	ci right 1.074280e-03	k: 1428	n:1400000
DKK2   1400000 perm   996 sec   (1406 perm/sec)   p_kst 1.020000e-03   p_cons 1.116914e-01   p_joint 1.985714e-04

Joint ci ratio: 2.334092e-01	ci left: 1.766701e-04	ci right 2.240044e-04	k: 281	n:1410000
Cons ci ratio: 9.311301e-03	ci left: 1.111430e-01	ci right 1.121834e-01	k: 157444	n:1410000
KS ci ratio: 1.029980e-01	ci left: 9.733736e-04	ci right 1.079757e-03	k: 1446	n:1410000
DKK2   1410000 perm   1008 sec   (1399 perm/sec)   p_kst 1.025532e-03   p_cons 1.116624e-01   p_joint 1.992908e-04

Joint ci ratio: 2.329965e-01	ci left: 1.760891e-04	ci right 2.231722e-04	k: 282	n:1420000
Cons ci ratio: 9.278576e-03	ci left: 1.111423e-01	ci right 1.121790e-01	k: 158557	n:1420000
KS ci ratio: 1.025032e-01	ci left: 9.761247e-04	ci right 1.082265e-03	k: 1460	n:1420000
DKK2   1420000 perm   1020 sec   (1392 perm/sec)   p_kst 1.028169e-03   p_cons 1.116599e-01   p_joint 1.985915e-04

Joint ci ratio: 2.325860e-01	ci left: 1.755162e-04	ci right 2.223516e-04	k: 283	n:1430000
Cons ci ratio: 9.246781e-03	ci left: 1.111290e-01	ci right 1.121621e-01	k: 159652	n:1430000
KS ci ratio: 1.021542e-01	ci left: 9.761127e-04	ci right 1.081869e-03	k: 1470	n:1430000
DKK2   1430000 perm   1033 sec   (1385 perm/sec)   p_kst 1.027972e-03   p_cons 1.116448e-01   p_joint 1.979021e-04

Joint ci ratio: 2.309650e-01	ci left: 1.769138e-04	ci right 2.237462e-04	k: 287	n:1440000
Cons ci ratio: 9.213794e-03	ci left: 1.111485e-01	ci right 1.121780e-01	k: 160794	n:1440000
KS ci ratio: 1.016371e-01	ci left: 9.794854e-04	ci right 1.085038e-03	k: 1485	n:1440000
DKK2   1440000 perm   1045 sec   (1377 perm/sec)   p_kst 1.031250e-03   p_cons 1.116625e-01   p_joint 1.993056e-04

Joint ci ratio: 2.293775e-01	ci left: 1.782933e-04	ci right 2.251205e-04	k: 291	n:1450000
Cons ci ratio: 9.181828e-03	ci left: 1.111533e-01	ci right 1.121793e-01	k: 161915	n:1450000
KS ci ratio: 1.012969e-01	ci left: 9.794519e-04	ci right 1.084626e-03	k: 1495	n:1450000
DKK2   1450000 perm   1059 sec   (1369 perm/sec)   p_kst 1.031034e-03   p_cons 1.116655e-01   p_joint 2.006897e-04

Joint ci ratio: 2.282081e-01	ci left: 1.790092e-04	ci right 2.257509e-04	k: 294	n:1460000
Cons ci ratio: 9.152310e-03	ci left: 1.111122e-01	ci right 1.121345e-01	k: 162969	n:1460000
KS ci ratio: 1.008930e-01	ci left: 9.807547e-04	ci right 1.085624e-03	k: 1507	n:1460000
DKK2   1460000 perm   1072 sec   (1362 perm/sec)   p_kst 1.032192e-03   p_cons 1.116226e-01   p_joint 2.013699e-04

Joint ci ratio: 2.270564e-01	ci left: 1.797159e-04	ci right 2.263722e-04	k: 297	n:1470000
Cons ci ratio: 9.120696e-03	ci left: 1.111233e-01	ci right 1.121422e-01	k: 164099	n:1470000
KS ci ratio: 1.006265e-01	ci left: 9.793879e-04	ci right 1.083818e-03	k: 1515	n:1470000
DKK2   1470000 perm   1085 sec   (1355 perm/sec)   p_kst 1.030612e-03   p_cons 1.116320e-01   p_joint 2.020408e-04

Joint ci ratio: 2.259220e-01	ci left: 1.804136e-04	ci right 2.269845e-04	k: 300	n:1480000
Cons ci ratio: 9.089593e-03	ci left: 1.111302e-01	ci right 1.121456e-01	k: 165223	n:1480000
KS ci ratio: 1.000994e-01	ci left: 9.833100e-04	ci right 1.087577e-03	k: 1531	n:1480000
DKK2   1480000 perm   1098 sec   (1347 perm/sec)   p_kst 1.034459e-03   p_cons 1.116372e-01   p_joint 2.027027e-04

Joint ci ratio: 2.255477e-01	ci left: 1.798360e-04	ci right 2.261701e-04	k: 301	n:1490000
Cons ci ratio: 9.059082e-03	ci left: 1.111310e-01	ci right 1.121430e-01	k: 166338	n:1490000
KS ci ratio: 9.987165e-02	ci left: 9.812911e-04	ci right 1.085094e-03	k: 1538	n:1490000
DKK2   1490000 perm   1111 sec   (1341 perm/sec)   p_kst 1.032215e-03   p_cons 1.116362e-01   p_joint 2.020134e-04

Joint ci ratio: 2.285966e-01	ci left: 1.736070e-04	ci right 2.190263e-04	k: 293	n:1500000
Cons ci ratio: 9.029027e-03	ci left: 1.111285e-01	ci right 1.121370e-01	k: 167448	n:1500000
KS ci ratio: 9.951661e-02	ci left: 9.818996e-04	ci right 1.085376e-03	k: 1549	n:1500000
DKK2   1500000 perm   1124 sec   (1334 perm/sec)   p_kst 1.032667e-03   p_cons 1.116320e-01   p_joint 1.953333e-04

Joint ci ratio: 2.251754e-01	ci left: 1.780789e-04	ci right 2.238741e-04	k: 302	n:1510000
Cons ci ratio: 8.997708e-03	ci left: 1.111603e-01	ci right 1.121657e-01	k: 168610	n:1510000
KS ci ratio: 9.900673e-02	ci left: 9.857301e-04	ci right 1.089047e-03	k: 1565	n:1510000
DKK2   1510000 perm   1137 sec   (1328 perm/sec)   p_kst 1.036424e-03   p_cons 1.116623e-01   p_joint 2.000000e-04

Joint ci ratio: 2.240689e-01	ci left: 1.787700e-04	ci right 2.244858e-04	k: 305	n:1520000
Cons ci ratio: 8.969538e-03	ci left: 1.111294e-01	ci right 1.121313e-01	k: 169677	n:1520000
KS ci ratio: 9.872350e-02	ci left: 9.850196e-04	ci right 1.087949e-03	k: 1574	n:1520000
DKK2   1520000 perm   1150 sec   (1321 perm/sec)   p_kst 1.035526e-03   p_cons 1.116296e-01   p_joint 2.006579e-04

Joint ci ratio: 1.952433e-01	ci left: 2.376881e-04	ci right 2.897245e-04	k: 402	n:1530000
Cons ci ratio: 8.940334e-03	ci left: 1.111276e-01	ci right 1.121262e-01	k: 170788	n:1530000
KS ci ratio: 9.841158e-02	ci left: 9.849564e-04	ci right 1.087536e-03	k: 1584	n:1530000
DKK2   1530000 perm   1163 sec   (1315 perm/sec)   p_kst 1.035294e-03   p_cons 1.116261e-01   p_joint 2.627451e-04

Joint ci ratio: 1.945206e-01	ci left: 2.379977e-04	ci right 2.898861e-04	k: 405	n:1540000
Cons ci ratio: 8.911267e-03	ci left: 1.111290e-01	ci right 1.121244e-01	k: 171904	n:1540000
KS ci ratio: 9.813341e-02	ci left: 9.842611e-04	ci right 1.086461e-03	k: 1593	n:1540000
DKK2   1540000 perm   1177 sec   (1308 perm/sec)   p_kst 1.034416e-03   p_cons 1.116260e-01   p_joint 2.629870e-04

Joint ci ratio: 1.940433e-01	ci left: 2.376898e-04	ci right 2.893689e-04	k: 407	n:1550000
Cons ci ratio: 8.881211e-03	ci left: 1.111588e-01	ci right 1.121510e-01	k: 173064	n:1550000
KS ci ratio: 9.773559e-02	ci left: 9.860927e-04	ci right 1.088044e-03	k: 1606	n:1550000
DKK2   1550000 perm   1190 sec   (1302 perm/sec)   p_kst 1.036129e-03   p_cons 1.116542e-01   p_joint 2.625806e-04

Joint ci ratio: 1.967141e-01	ci left: 2.294597e-04	ci right 2.801183e-04	k: 396	n:1560000
Cons ci ratio: 8.852516e-03	ci left: 1.111645e-01	ci right 1.121536e-01	k: 174187	n:1560000
KS ci ratio: 9.737266e-02	ci left: 9.872763e-04	ci right 1.088950e-03	k: 1618	n:1560000
DKK2   1560000 perm   1204 sec   (1296 perm/sec)   p_kst 1.037179e-03   p_cons 1.116583e-01   p_joint 2.538462e-04

Joint ci ratio: 1.967142e-01	ci left: 2.279981e-04	ci right 2.783342e-04	k: 396	n:1570000
Cons ci ratio: 8.825343e-03	ci left: 1.111422e-01	ci right 1.121280e-01	k: 175266	n:1570000
KS ci ratio: 9.719286e-02	ci left: 9.847165e-04	ci right 1.085928e-03	k: 1624	n:1570000
DKK2   1570000 perm   1217 sec   (1290 perm/sec)   p_kst 1.034395e-03   p_cons 1.116344e-01   p_joint 2.522293e-04

Joint ci ratio: 1.957306e-01	ci left: 2.289624e-04	ci right 2.792284e-04	k: 400	n:1580000
Cons ci ratio: 8.797521e-03	ci left: 1.111404e-01	ci right 1.121231e-01	k: 176377	n:1580000
KS ci ratio: 9.689519e-02	ci left: 9.846597e-04	ci right 1.085538e-03	k: 1634	n:1580000
DKK2   1580000 perm   1230 sec   (1284 perm/sec)   p_kst 1.034177e-03   p_cons 1.116310e-01   p_joint 2.531646e-04

Joint ci ratio: 1.945214e-01	ci left: 2.305134e-04	ci right 2.807703e-04	k: 405	n:1590000
Cons ci ratio: 8.768931e-03	ci left: 1.111618e-01	ci right 1.121415e-01	k: 177525	n:1590000
KS ci ratio: 9.642437e-02	ci left: 9.882866e-04	ci right 1.089017e-03	k: 1650	n:1590000
DKK2   1590000 perm   1244 sec   (1278 perm/sec)   p_kst 1.037736e-03   p_cons 1.116509e-01   p_joint 2.547170e-04

Joint ci ratio: 1.938067e-01	ci left: 2.308566e-04	ci right 2.809815e-04	k: 408	n:1600000
Cons ci ratio: 8.741141e-03	ci left: 1.111711e-01	ci right 1.121478e-01	k: 178654	n:1600000
KS ci ratio: 9.633710e-02	ci left: 9.839395e-04	ci right 1.084131e-03	k: 1653	n:1600000
DKK2   1600000 perm   1258 sec   (1272 perm/sec)   p_kst 1.033125e-03   p_cons 1.116588e-01   p_joint 2.550000e-04

Joint ci ratio: 1.260861e-01	ci left: 5.621640e-04	ci right 6.384088e-04	k: 965	n:1610000
Cons ci ratio: 8.712850e-03	ci left: 1.111977e-01	ci right 1.121714e-01	k: 179811	n:1610000
KS ci ratio: 9.278326e-02	ci left: 1.056060e-03	ci right 1.159413e-03	k: 1782	n:1610000
DKK2   1610000 perm   1272 sec   (1266 perm/sec)   p_kst 1.106832e-03   p_cons 1.116839e-01   p_joint 5.993789e-04

Joint ci ratio: 1.258259e-01	ci left: 5.610851e-04	ci right 6.370150e-04	k: 969	n:1620000
Cons ci ratio: 8.686345e-03	ci left: 1.111894e-01	ci right 1.121601e-01	k: 180912	n:1620000
KS ci ratio: 9.247258e-02	ci left: 1.056777e-03	ci right 1.159835e-03	k: 1794	n:1620000
DKK2   1620000 perm   1285 sec   (1260 perm/sec)   p_kst 1.107407e-03   p_cons 1.116741e-01   p_joint 5.981481e-04

Joint ci ratio: 1.256965e-01	ci left: 5.588312e-04	ci right 6.343725e-04	k: 971	n:1630000
Cons ci ratio: 8.659171e-03	ci left: 1.112021e-01	ci right 1.121698e-01	k: 182047	n:1630000
KS ci ratio: 9.224168e-02	ci left: 1.055687e-03	ci right 1.158368e-03	k: 1803	n:1630000
DKK2   1630000 perm   1299 sec   (1254 perm/sec)   p_kst 1.106135e-03   p_cons 1.116853e-01   p_joint 5.957055e-04

Joint ci ratio: 1.252463e-01	ci left: 5.595581e-04	ci right 6.349066e-04	k: 978	n:1640000
Cons ci ratio: 8.632435e-03	ci left: 1.112104e-01	ci right 1.121751e-01	k: 183175	n:1640000
KS ci ratio: 9.206335e-02	ci left: 1.053420e-03	ci right 1.155672e-03	k: 1810	n:1640000
DKK2   1640000 perm   1314 sec   (1248 perm/sec)   p_kst 1.103659e-03   p_cons 1.116921e-01   p_joint 5.963415e-04

Joint ci ratio: 1.248009e-01	ci left: 5.602766e-04	ci right 6.354337e-04	k: 985	n:1650000
Cons ci ratio: 8.606734e-03	ci left: 1.112004e-01	ci right 1.121622e-01	k: 184273	n:1650000
KS ci ratio: 9.175982e-02	ci left: 1.054141e-03	ci right 1.156108e-03	k: 1822	n:1650000
DKK2   1650000 perm   1328 sec   (1242 perm/sec)   p_kst 1.104242e-03   p_cons 1.116806e-01   p_joint 5.969697e-04

Joint ci ratio: 1.244229e-01	ci left: 5.604032e-04	ci right 6.353328e-04	k: 991	n:1660000
Cons ci ratio: 8.582459e-03	ci left: 1.111629e-01	ci right 1.121216e-01	k: 185325	n:1660000
KS ci ratio: 9.148423e-02	ci left: 1.054266e-03	ci right 1.155921e-03	k: 1833	n:1660000
DKK2   1660000 perm   1342 sec   (1237 perm/sec)   p_kst 1.104217e-03   p_cons 1.116416e-01   p_joint 5.969880e-04

Joint ci ratio: 1.240483e-01	ci left: 5.605287e-04	ci right 6.352328e-04	k: 997	n:1670000
Cons ci ratio: 8.557537e-03	ci left: 1.111455e-01	ci right 1.121013e-01	k: 186410	n:1670000
KS ci ratio: 9.118637e-02	ci left: 1.054974e-03	ci right 1.156349e-03	k: 1845	n:1670000
DKK2   1670000 perm   1356 sec   (1231 perm/sec)   p_kst 1.104790e-03   p_cons 1.116228e-01   p_joint 5.970060e-04

Joint ci ratio: 1.237388e-01	ci left: 5.600761e-04	ci right 6.345201e-04	k: 1002	n:1680000
Cons ci ratio: 8.531703e-03	ci left: 1.111545e-01	ci right 1.121075e-01	k: 187539	n:1680000
KS ci ratio: 9.096495e-02	ci left: 1.053930e-03	ci right 1.154945e-03	k: 1854	n:1680000
DKK2   1680000 perm   1371 sec   (1226 perm/sec)   p_kst 1.103571e-03   p_cons 1.116304e-01   p_joint 5.964286e-04

Joint ci ratio: 1.235542e-01	ci left: 5.584823e-04	ci right 6.325956e-04	k: 1005	n:1690000
Cons ci ratio: 8.505949e-03	ci left: 1.111670e-01	ci right 1.121172e-01	k: 188674	n:1690000
KS ci ratio: 9.076951e-02	ci left: 1.052320e-03	ci right 1.152953e-03	k: 1862	n:1690000
DKK2   1690000 perm   1385 sec   (1220 perm/sec)   p_kst 1.101775e-03   p_cons 1.116414e-01   p_joint 5.946746e-04

Joint ci ratio: 1.231266e-01	ci left: 5.591877e-04	ci right 6.331191e-04	k: 1012	n:1700000
Cons ci ratio: 8.480579e-03	ci left: 1.111758e-01	ci right 1.121232e-01	k: 189803	n:1700000
KS ci ratio: 9.050272e-02	ci left: 1.052454e-03	ci right 1.152788e-03	k: 1873	n:1700000
DKK2   1700000 perm   1400 sec   (1215 perm/sec)   p_kst 1.101765e-03   p_cons 1.116488e-01   p_joint 5.952941e-04

Joint ci ratio: 1.227635e-01	ci left: 5.593185e-04	ci right 6.330332e-04	k: 1018	n:1710000
Cons ci ratio: 8.455459e-03	ci left: 1.111839e-01	ci right 1.121285e-01	k: 190931	n:1710000
KS ci ratio: 9.023827e-02	ci left: 1.052586e-03	ci right 1.152625e-03	k: 1884	n:1710000
DKK2   1710000 perm   1414 sec   (1209 perm/sec)   p_kst 1.101754e-03   p_cons 1.116556e-01   p_joint 5.953216e-04

Joint ci ratio: 1.224037e-01	ci left: 5.594480e-04	ci right 6.329481e-04	k: 1024	n:1720000
Cons ci ratio: 8.431178e-03	ci left: 1.111774e-01	ci right 1.121193e-01	k: 192034	n:1720000
KS ci ratio: 8.990495e-02	ci left: 1.054423e-03	ci right 1.154246e-03	k: 1898	n:1720000
DKK2   1720000 perm   1429 sec   (1204 perm/sec)   p_kst 1.103488e-03   p_cons 1.116477e-01   p_joint 5.953488e-04

Joint ci ratio: 1.219287e-01	ci left: 5.606972e-04	ci right 6.340549e-04	k: 1032	n:1730000
Cons ci ratio: 8.407571e-03	ci left: 1.111600e-01	ci right 1.120991e-01	k: 193118	n:1730000
KS ci ratio: 8.955186e-02	ci left: 1.056804e-03	ci right 1.156439e-03	k: 1913	n:1730000
DKK2   1730000 perm   1443 sec   (1199 perm/sec)   p_kst 1.105780e-03   p_cons 1.116289e-01   p_joint 5.965318e-04

Joint ci ratio: 1.219880e-01	ci left: 5.569176e-04	ci right 6.298188e-04	k: 1031	n:1740000
Cons ci ratio: 8.383068e-03	ci left: 1.111686e-01	ci right 1.121051e-01	k: 194247	n:1740000
KS ci ratio: 8.934211e-02	ci left: 1.055787e-03	ci right 1.155081e-03	k: 1922	n:1740000
DKK2   1740000 perm   1458 sec   (1193 perm/sec)   p_kst 1.104598e-03   p_cons 1.116362e-01   p_joint 5.925287e-04

Joint ci ratio: 1.218112e-01	ci left: 5.553972e-04	ci right 6.279864e-04	k: 1034	n:1750000
Cons ci ratio: 8.360343e-03	ci left: 1.111401e-01	ci right 1.120737e-01	k: 195311	n:1750000
KS ci ratio: 8.915692e-02	ci left: 1.054223e-03	ci right 1.153154e-03	k: 1930	n:1750000
DKK2   1750000 perm   1473 sec   (1188 perm/sec)   p_kst 1.102857e-03   p_cons 1.116063e-01   p_joint 5.908571e-04

Joint ci ratio: 1.215181e-01	ci left: 5.549959e-04	ci right 6.273456e-04	k: 1039	n:1760000
Cons ci ratio: 8.336465e-03	ci left: 1.111437e-01	ci right 1.120746e-01	k: 196431	n:1760000
KS ci ratio: 8.894993e-02	ci left: 1.053233e-03	ci right 1.151829e-03	k: 1939	n:1760000
DKK2   1760000 perm   1488 sec   (1183 perm/sec)   p_kst 1.101705e-03   p_cons 1.116085e-01   p_joint 5.903409e-04

Joint ci ratio: 1.211111e-01	ci left: 5.556952e-04	ci right 6.278760e-04	k: 1046	n:1770000
Cons ci ratio: 8.312671e-03	ci left: 1.111500e-01	ci right 1.120784e-01	k: 197556	n:1770000
KS ci ratio: 8.865334e-02	ci left: 1.054464e-03	ci right 1.152830e-03	k: 1952	n:1770000
DKK2   1770000 perm   1503 sec   (1178 perm/sec)   p_kst 1.102825e-03   p_cons 1.116136e-01   p_joint 5.909605e-04

Joint ci ratio: 1.226446e-01	ci left: 5.384116e-04	ci right 6.092972e-04	k: 1020	n:1780000
Cons ci ratio: 8.288446e-03	ci left: 1.111714e-01	ci right 1.120972e-01	k: 198708	n:1780000
KS ci ratio: 8.849499e-02	ci left: 1.052386e-03	ci right 1.150373e-03	k: 1959	n:1780000
DKK2   1780000 perm   1517 sec   (1173 perm/sec)   p_kst 1.100562e-03   p_cons 1.116337e-01   p_joint 5.730337e-04

Joint ci ratio: 1.221669e-01	ci left: 5.397361e-04	ci right 6.104993e-04	k: 1028	n:1790000
Cons ci ratio: 8.265945e-03	ci left: 1.111564e-01	ci right 1.120795e-01	k: 199795	n:1790000
KS ci ratio: 8.822530e-02	ci left: 1.053062e-03	ci right 1.150798e-03	k: 1971	n:1790000
DKK2   1790000 perm   1533 sec   (1168 perm/sec)   p_kst 1.101117e-03   p_cons 1.116173e-01   p_joint 5.743017e-04

Joint ci ratio: 1.217534e-01	ci left: 5.405079e-04	ci right 6.111151e-04	k: 1035	n:1800000
Cons ci ratio: 8.242494e-03	ci left: 1.111686e-01	ci right 1.120893e-01	k: 200931	n:1800000
KS ci ratio: 8.786943e-02	ci left: 1.055905e-03	ci right 1.153489e-03	k: 1987	n:1800000
DKK2   1800000 perm   1548 sec   (1163 perm/sec)   p_kst 1.103889e-03   p_cons 1.116283e-01   p_joint 5.750000e-04

Joint ci ratio: 1.214023e-01	ci left: 5.407357e-04	ci right 6.111544e-04	k: 1041	n:1810000
Cons ci ratio: 8.219562e-03	ci left: 1.111731e-01	ci right 1.120912e-01	k: 202053	n:1810000
KS ci ratio: 8.749598e-02	ci left: 1.059258e-03	ci right 1.156714e-03	k: 2004	n:1810000
DKK2   1810000 perm   1563 sec   (1158 perm/sec)   p_kst 1.107182e-03   p_cons 1.116315e-01   p_joint 5.751381e-04

Joint ci ratio: 1.221081e-01	ci left: 5.313719e-04	ci right 6.010025e-04	k: 1029	n:1820000
Cons ci ratio: 8.195096e-03	ci left: 1.112191e-01	ci right 1.121349e-01	k: 203251	n:1820000
KS ci ratio: 8.714882e-02	ci left: 1.062037e-03	ci right 1.159342e-03	k: 2020	n:1820000
DKK2   1820000 perm   1579 sec   (1153 perm/sec)   p_kst 1.109890e-03   p_cons 1.116764e-01   p_joint 5.653846e-04

Joint ci ratio: 1.228263e-01	ci left: 5.221116e-04	ci right 5.909604e-04	k: 1017	n:1830000
Cons ci ratio: 8.172692e-03	ci left: 1.112200e-01	ci right 1.121332e-01	k: 204367	n:1830000
KS ci ratio: 8.689122e-02	ci left: 1.062648e-03	ci right 1.159707e-03	k: 2032	n:1830000
DKK2   1830000 perm   1595 sec   (1148 perm/sec)   p_kst 1.110383e-03   p_cons 1.116760e-01   p_joint 5.557377e-04

Joint ci ratio: 1.241140e-01	ci left: 5.082132e-04	ci right 5.759835e-04	k: 996	n:1840000
Cons ci ratio: 8.150202e-03	ci left: 1.112273e-01	ci right 1.121381e-01	k: 205495	n:1840000
KS ci ratio: 8.674211e-02	ci left: 1.060595e-03	ci right 1.157291e-03	k: 2039	n:1840000
DKK2   1840000 perm   1611 sec   (1142 perm/sec)   p_kst 1.108152e-03   p_cons 1.116821e-01   p_joint 5.413043e-04

Joint ci ratio: 1.239277e-01	ci left: 5.070374e-04	ci right 5.745420e-04	k: 999	n:1850000
Cons ci ratio: 8.127189e-03	ci left: 1.112518e-01	ci right 1.121602e-01	k: 206655	n:1850000
KS ci ratio: 8.653031e-02	ci left: 1.060150e-03	ci right 1.156558e-03	k: 2049	n:1850000
DKK2   1850000 perm   1626 sec   (1138 perm/sec)   p_kst 1.107568e-03   p_cons 1.117054e-01   p_joint 5.400000e-04

Joint ci ratio: 1.236191e-01	ci left: 5.069164e-04	ci right 5.742245e-04	k: 1004	n:1860000
Cons ci ratio: 8.105884e-03	ci left: 1.112391e-01	ci right 1.121449e-01	k: 207746	n:1860000
KS ci ratio: 8.636204e-02	ci left: 1.058658e-03	ci right 1.154734e-03	k: 2057	n:1860000
DKK2   1860000 perm   1642 sec   (1133 perm/sec)   p_kst 1.105914e-03   p_cons 1.116914e-01   p_joint 5.397849e-04

Joint ci ratio: 1.234351e-01	ci left: 5.057603e-04	ci right 5.728076e-04	k: 1007	n:1870000
Cons ci ratio: 8.084245e-03	ci left: 1.112387e-01	ci right 1.121422e-01	k: 208860	n:1870000
KS ci ratio: 8.617386e-02	ci left: 1.057706e-03	ci right 1.153475e-03	k: 2066	n:1870000
DKK2   1870000 perm   1658 sec   (1128 perm/sec)   p_kst 1.104813e-03   p_cons 1.116898e-01   p_joint 5.385027e-04

Joint ci ratio: 1.230693e-01	ci left: 5.061631e-04	ci right 5.730506e-04	k: 1013	n:1880000
Cons ci ratio: 8.062779e-03	ci left: 1.112384e-01	ci right 1.121394e-01	k: 209974	n:1880000
KS ci ratio: 8.602841e-02	ci left: 1.055723e-03	ci right 1.151144e-03	k: 2073	n:1880000
DKK2   1880000 perm   1674 sec   (1123 perm/sec)   p_kst 1.102660e-03   p_cons 1.116883e-01   p_joint 5.388298e-04

Joint ci ratio: 1.225267e-01	ci left: 5.081007e-04	ci right 5.749266e-04	k: 1022	n:1890000
Cons ci ratio: 8.042469e-03	ci left: 1.112138e-01	ci right 1.121123e-01	k: 211042	n:1890000
KS ci ratio: 8.569837e-02	ci left: 1.058421e-03	ci right 1.153700e-03	k: 2089	n:1890000
DKK2   1890000 perm   1690 sec   (1119 perm/sec)   p_kst 1.105291e-03   p_cons 1.116624e-01   p_joint 5.407407e-04

Joint ci ratio: 1.224072e-01	ci left: 5.064468e-04	ci right 5.729856e-04	k: 1024	n:1900000
Cons ci ratio: 8.021630e-03	ci left: 1.112062e-01	ci right 1.121024e-01	k: 212142	n:1900000
KS ci ratio: 8.553489e-02	ci left: 1.056971e-03	ci right 1.151929e-03	k: 2097	n:1900000
DKK2   1900000 perm   1706 sec   (1114 perm/sec)   p_kst 1.103684e-03   p_cons 1.116537e-01   p_joint 5.389474e-04

Joint ci ratio: 1.223476e-01	ci left: 5.043028e-04	ci right 5.705253e-04	k: 1025	n:1910000
Cons ci ratio: 8.000425e-03	ci left: 1.112118e-01	ci right 1.121056e-01	k: 213267	n:1910000
KS ci ratio: 8.535206e-02	ci left: 1.056048e-03	ci right 1.150710e-03	k: 2106	n:1910000
DKK2   1910000 perm   1721 sec   (1110 perm/sec)   p_kst 1.102618e-03   p_cons 1.116581e-01   p_joint 5.366492e-04

Joint ci ratio: 2.222647e-01	ci left: 1.439845e-04	ci right 1.804678e-04	k: 310	n:1920000
Cons ci ratio: 7.979995e-03	ci left: 1.112023e-01	ci right 1.120937e-01	k: 214363	n:1920000
KS ci ratio: 9.029168e-02	ci left: 9.364389e-04	ci right 1.025494e-03	k: 1882	n:1920000
DKK2   1920000 perm   1738 sec   (1105 perm/sec)   p_kst 9.802083e-04   p_cons 1.116474e-01   p_joint 1.614583e-04

Joint ci ratio: 2.208489e-01	ci left: 1.451960e-04	ci right 1.817201e-04	k: 314	n:1930000
Cons ci ratio: 7.960344e-03	ci left: 1.111773e-01	ci right 1.120664e-01	k: 215429	n:1930000
KS ci ratio: 9.007669e-02	ci left: 9.361450e-04	ci right 1.024949e-03	k: 1891	n:1930000
DKK2   1930000 perm   1754 sec   (1100 perm/sec)   p_kst 9.797927e-04   p_cons 1.116212e-01   p_joint 1.626943e-04

Joint ci ratio: 2.201511e-01	ci left: 1.454216e-04	ci right 1.818712e-04	k: 316	n:1940000
Cons ci ratio: 7.939311e-03	ci left: 1.111907e-01	ci right 1.120775e-01	k: 216569	n:1940000
KS ci ratio: 8.986323e-02	ci left: 9.358543e-04	ci right 1.024409e-03	k: 1900	n:1940000
DKK2   1940000 perm   1770 sec   (1096 perm/sec)   p_kst 9.793814e-04   p_cons 1.116335e-01   p_joint 1.628866e-04

Joint ci ratio: 2.198047e-01	ci left: 1.451604e-04	ci right 1.814795e-04	k: 317	n:1950000
Cons ci ratio: 7.919221e-03	ci left: 1.111845e-01	ci right 1.120690e-01	k: 217671	n:1950000
KS ci ratio: 8.955746e-02	ci left: 9.375722e-04	ci right 1.025972e-03	k: 1913	n:1950000
DKK2   1950000 perm   1787 sec   (1091 perm/sec)   p_kst 9.810256e-04   p_cons 1.116262e-01   p_joint 1.625641e-04

Joint ci ratio: 2.198048e-01	ci left: 1.444198e-04	ci right 1.805536e-04	k: 317	n:1960000
Cons ci ratio: 7.899120e-03	ci left: 1.111824e-01	ci right 1.120646e-01	k: 218781	n:1960000
KS ci ratio: 8.948751e-02	ci left: 9.342849e-04	ci right 1.022302e-03	k: 1916	n:1960000
DKK2   1960000 perm   1803 sec   (1087 perm/sec)   p_kst 9.775510e-04   p_cons 1.116230e-01   p_joint 1.617347e-04

Joint ci ratio: 2.191168e-01	ci left: 1.446461e-04	ci right 1.807081e-04	k: 319	n:1970000
Cons ci ratio: 7.879152e-03	ci left: 1.111809e-01	ci right 1.120609e-01	k: 219892	n:1970000
KS ci ratio: 8.932463e-02	ci left: 9.330162e-04	ci right 1.020746e-03	k: 1923	n:1970000
DKK2   1970000 perm   1820 sec   (1082 perm/sec)   p_kst 9.761421e-04   p_cons 1.116203e-01   p_joint 1.619289e-04

Joint ci ratio: 1.899041e-01	ci left: 1.947239e-04	ci right 2.360540e-04	k: 425	n:1980000
Cons ci ratio: 7.859134e-03	ci left: 1.111844e-01	ci right 1.120622e-01	k: 221013	n:1980000
KS ci ratio: 8.907035e-02	ci left: 9.337356e-04	ci right 1.021270e-03	k: 1934	n:1980000
DKK2   1980000 perm   1837 sec   (1078 perm/sec)   p_kst 9.767677e-04   p_cons 1.116227e-01   p_joint 2.146465e-04

Joint ci ratio: 1.894599e-01	ci left: 1.947027e-04	ci right 2.359205e-04	k: 427	n:1990000
Cons ci ratio: 7.838851e-03	ci left: 1.111985e-01	ci right 1.120740e-01	k: 222155	n:1990000
KS ci ratio: 8.874978e-02	ci left: 9.359223e-04	ci right 1.023329e-03	k: 1948	n:1990000
DKK2   1990000 perm   1853 sec   (1074 perm/sec)   p_kst 9.788945e-04   p_cons 1.116357e-01   p_joint 2.145729e-04

Joint ci ratio: 1.892390e-01	ci left: 1.942055e-04	ci right 2.352645e-04	k: 428	n:2000000
Cons ci ratio: 7.819926e-03	ci left: 1.111819e-01	ci right 1.120552e-01	k: 223236	n:2000000
KS ci ratio: 8.843264e-02	ci left: 9.380876e-04	ci right 1.025368e-03	k: 1962	n:2000000
DKK2   2000000 perm   1870 sec   (1070 perm/sec)   p_kst 9.810000e-04   p_cons 1.116180e-01   p_joint 2.140000e-04

Joint ci ratio: 1.887995e-01	ci left: 1.941872e-04	ci right 2.351361e-04	k: 430	n:2010000
Cons ci ratio: 7.800825e-03	ci left: 1.111735e-01	ci right 1.120446e-01	k: 224333	n:2010000
KS ci ratio: 8.832033e-02	ci left: 9.358531e-04	ci right 1.022809e-03	k: 1967	n:2010000
DKK2   2010000 perm   1887 sec   (1065 perm/sec)   p_kst 9.786070e-04   p_cons 1.116085e-01   p_joint 2.139303e-04

Joint ci ratio: 1.885809e-01	ci left: 1.936976e-04	ci right 2.344905e-04	k: 431	n:2020000
Cons ci ratio: 7.782426e-03	ci left: 1.111508e-01	ci right 1.120197e-01	k: 225401	n:2020000
KS ci ratio: 8.818609e-02	ci left: 9.341248e-04	ci right 1.020781e-03	k: 1973	n:2020000
DKK2   2020000 perm   1904 sec   (1061 perm/sec)   p_kst 9.767327e-04   p_cons 1.115847e-01   p_joint 2.133663e-04

Joint ci ratio: 1.879294e-01	ci left: 1.941516e-04	ci right 2.348828e-04	k: 434	n:2030000
Cons ci ratio: 7.762672e-03	ci left: 1.111662e-01	ci right 1.120330e-01	k: 226546	n:2030000
KS ci ratio: 8.791921e-02	ci left: 9.353044e-04	ci right 1.021794e-03	k: 1985	n:2030000
DKK2   2030000 perm   1920 sec   (1057 perm/sec)   p_kst 9.778325e-04   p_cons 1.115990e-01   p_joint 2.137931e-04

Joint ci ratio: 1.921742e-01	ci left: 1.843291e-04	ci right 2.239752e-04	k: 415	n:2040000
Cons ci ratio: 7.743584e-03	ci left: 1.111682e-01	ci right 1.120329e-01	k: 227664	n:2040000
KS ci ratio: 8.763280e-02	ci left: 9.369523e-04	ci right 1.023298e-03	k: 1998	n:2040000
DKK2   2040000 perm   1938 sec   (1053 perm/sec)   p_kst 9.794118e-04   p_cons 1.116000e-01   p_joint 2.034314e-04

Joint ci ratio: 1.919437e-01	ci left: 1.838943e-04	ci right 2.233939e-04	k: 416	n:2050000
Cons ci ratio: 7.724028e-03	ci left: 1.111858e-01	ci right 1.120484e-01	k: 228814	n:2050000
KS ci ratio: 8.739265e-02	ci left: 9.376302e-04	ci right 1.023789e-03	k: 2009	n:2050000
DKK2   2050000 perm   1955 sec   (1049 perm/sec)   p_kst 9.800000e-04   p_cons 1.116166e-01   p_joint 2.029268e-04

Joint ci ratio: 1.912569e-01	ci left: 1.843881e-04	ci right 2.238355e-04	k: 419	n:2060000
Cons ci ratio: 7.705827e-03	ci left: 1.111723e-01	ci right 1.120327e-01	k: 229900	n:2060000
KS ci ratio: 8.728426e-02	ci left: 9.354528e-04	ci right 1.021300e-03	k: 2014	n:2060000
DKK2   2060000 perm   1972 sec   (1045 perm/sec)   p_kst 9.776699e-04   p_cons 1.116019e-01   p_joint 2.033981e-04

Joint ci ratio: 1.908031e-01	ci left: 1.844173e-04	ci right 2.237665e-04	k: 421	n:2070000
Cons ci ratio: 7.685900e-03	ci left: 1.112066e-01	ci right 1.120651e-01	k: 231085	n:2070000
KS ci ratio: 8.706847e-02	ci left: 9.356593e-04	ci right 1.021302e-03	k: 2024	n:2070000
DKK2   2070000 perm   1989 sec   (1041 perm/sec)   p_kst 9.777778e-04   p_cons 1.116353e-01   p_joint 2.033816e-04

Joint ci ratio: 1.903526e-01	ci left: 1.844463e-04	ci right 2.236981e-04	k: 423	n:2080000
Cons ci ratio: 7.666925e-03	ci left: 1.112199e-01	ci right 1.120764e-01	k: 232227	n:2080000
KS ci ratio: 8.698273e-02	ci left: 9.330421e-04	ci right 1.018357e-03	k: 2028	n:2080000
DKK2   2080000 perm   2006 sec   (1037 perm/sec)   p_kst 9.750000e-04   p_cons 1.116476e-01   p_joint 2.033654e-04

Joint ci ratio: 1.901286e-01	ci left: 1.840195e-04	ci right 2.231290e-04	k: 424	n:2090000
Cons ci ratio: 7.647703e-03	ci left: 1.112432e-01	ci right 1.120976e-01	k: 233390	n:2090000
KS ci ratio: 8.687585e-02	ci left: 9.309181e-04	ci right 1.015929e-03	k: 2033	n:2090000
DKK2   2090000 perm   2023 sec   (1033 perm/sec)   p_kst 9.727273e-04   p_cons 1.116699e-01   p_joint 2.028708e-04

Joint ci ratio: 1.947675e-01	ci left: 1.740781e-04	ci right 2.120846e-04	k: 404	n:2100000
Cons ci ratio: 7.628954e-03	ci left: 1.112576e-01	ci right 1.121101e-01	k: 234535	n:2100000
KS ci ratio: 8.672680e-02	ci left: 9.297461e-04	ci right 1.014497e-03	k: 2040	n:2100000
DKK2   2100000 perm   2041 sec   (1029 perm/sec)   p_kst 9.714286e-04   p_cons 1.116833e-01   p_joint 1.923810e-04

Joint ci ratio: 1.945276e-01	ci left: 1.737039e-04	ci right 2.115764e-04	k: 405	n:2110000
Cons ci ratio: 7.610652e-03	ci left: 1.112639e-01	ci right 1.121144e-01	k: 235663	n:2110000
KS ci ratio: 8.662086e-02	ci left: 9.276580e-04	ci right 1.012110e-03	k: 2045	n:2110000
DKK2   2110000 perm   2059 sec   (1025 perm/sec)   p_kst 9.691943e-04   p_cons 1.116886e-01   p_joint 1.919431e-04

Joint ci ratio: 1.740725e-01	ci left: 2.183354e-04	ci right 2.604081e-04	k: 506	n:2120000
Cons ci ratio: 7.592156e-03	ci left: 1.112786e-01	ci right 1.121271e-01	k: 236809	n:2120000
KS ci ratio: 8.645204e-02	ci left: 9.269741e-04	ci right 1.011191e-03	k: 2053	n:2120000
DKK2   2120000 perm   2077 sec   (1021 perm/sec)   p_kst 9.683962e-04   p_cons 1.117024e-01   p_joint 2.386792e-04

Joint ci ratio: 1.733897e-01	ci left: 2.191066e-04	ci right 2.611451e-04	k: 510	n:2130000
Cons ci ratio: 7.574331e-03	ci left: 1.112791e-01	ci right 1.121257e-01	k: 237925	n:2130000
KS ci ratio: 8.622145e-02	ci left: 9.276750e-04	ci right 1.011719e-03	k: 2064	n:2130000
DKK2   2130000 perm   2095 sec   (1017 perm/sec)   p_kst 9.690141e-04   p_cons 1.117019e-01   p_joint 2.394366e-04

Joint ci ratio: 1.732204e-01	ci left: 2.185297e-04	ci right 2.604123e-04	k: 511	n:2140000
Cons ci ratio: 7.556650e-03	ci left: 1.112792e-01	ci right 1.121237e-01	k: 239040	n:2140000
KS ci ratio: 8.595126e-02	ci left: 9.292841e-04	ci right 1.013197e-03	k: 2077	n:2140000
DKK2   2140000 perm   2113 sec   (1013 perm/sec)   p_kst 9.705607e-04   p_cons 1.117009e-01   p_joint 2.387850e-04

Joint ci ratio: 1.730515e-01	ci left: 2.179583e-04	ci right 2.596863e-04	k: 512	n:2150000
Cons ci ratio: 7.538243e-03	ci left: 1.113015e-01	ci right 1.121442e-01	k: 240203	n:2150000
KS ci ratio: 8.578632e-02	ci left: 9.286028e-04	ci right 1.012286e-03	k: 2085	n:2150000
DKK2   2150000 perm   2131 sec   (1009 perm/sec)   p_kst 9.697674e-04   p_cons 1.117223e-01   p_joint 2.381395e-04

Joint ci ratio: 1.756391e-01	ci left: 2.103077e-04	ci right 2.512370e-04	k: 497	n:2160000
Cons ci ratio: 7.520076e-03	ci left: 1.113209e-01	ci right 1.121616e-01	k: 241360	n:2160000
KS ci ratio: 8.545908e-02	ci left: 9.315526e-04	ci right 1.015165e-03	k: 2101	n:2160000
DKK2   2160000 perm   2149 sec   (1005 perm/sec)   p_kst 9.726852e-04   p_cons 1.117407e-01   p_joint 2.300926e-04

Joint ci ratio: 1.754631e-01	ci left: 2.097791e-04	ci right 2.505603e-04	k: 498	n:2170000
Cons ci ratio: 7.502248e-03	ci left: 1.113345e-01	ci right 1.121734e-01	k: 242505	n:2170000
KS ci ratio: 8.521613e-02	ci left: 9.326717e-04	ci right 1.016135e-03	k: 2113	n:2170000
DKK2   2170000 perm   2167 sec   (1002 perm/sec)   p_kst 9.737327e-04   p_cons 1.117535e-01   p_joint 2.294931e-04

Joint ci ratio: 1.744175e-01	ci left: 2.114486e-04	ci right 2.522836e-04	k: 504	n:2180000
Cons ci ratio: 7.485463e-03	ci left: 1.113238e-01	ci right 1.121607e-01	k: 243597	n:2180000
KS ci ratio: 8.501529e-02	ci left: 9.328829e-04	ci right 1.016158e-03	k: 2123	n:2180000
DKK2   2180000 perm   2185 sec   (998 perm/sec)   p_kst 9.738532e-04   p_cons 1.117417e-01   p_joint 2.311927e-04

Joint ci ratio: 1.740731e-01	ci left: 2.113565e-04	ci right 2.520847e-04	k: 506	n:2190000
Cons ci ratio: 7.469013e-03	ci left: 1.113073e-01	ci right 1.121422e-01	k: 244676	n:2190000
KS ci ratio: 8.489554e-02	ci left: 9.313047e-04	ci right 1.014316e-03	k: 2129	n:2190000
DKK2   2190000 perm   2203 sec   (994 perm/sec)   p_kst 9.721461e-04   p_cons 1.117242e-01   p_joint 2.310502e-04

Joint ci ratio: 1.732210e-01	ci left: 2.125698e-04	ci right 2.533102e-04	k: 511	n:2200000
Cons ci ratio: 7.451443e-03	ci left: 1.113235e-01	ci right 1.121566e-01	k: 245827	n:2200000
KS ci ratio: 8.471676e-02	ci left: 9.310756e-04	ci right 1.013883e-03	k: 2138	n:2200000
DKK2   2200000 perm   2221 sec   (991 perm/sec)   p_kst 9.718182e-04   p_cons 1.117395e-01   p_joint 2.322727e-04

Joint ci ratio: 1.728836e-01	ci left: 2.124737e-04	ci right 2.531082e-04	k: 513	n:2210000
Cons ci ratio: 7.433166e-03	ci left: 1.113618e-01	ci right 1.121931e-01	k: 247027	n:2210000
KS ci ratio: 8.442117e-02	ci left: 9.335064e-04	ci right 1.016226e-03	k: 2153	n:2210000
DKK2   2210000 perm   2239 sec   (987 perm/sec)   p_kst 9.742081e-04   p_cons 1.117769e-01   p_joint 2.321267e-04

Joint ci ratio: 1.728837e-01	ci left: 2.115166e-04	ci right 2.519680e-04	k: 513	n:2220000
Cons ci ratio: 7.415880e-03	ci left: 1.113768e-01	ci right 1.122062e-01	k: 248176	n:2220000
KS ci ratio: 8.420641e-02	ci left: 9.341519e-04	ci right 1.016708e-03	k: 2164	n:2220000
DKK2   2220000 perm   2257 sec   (984 perm/sec)   p_kst 9.747748e-04   p_cons 1.117910e-01   p_joint 2.310811e-04

Joint ci ratio: 1.770681e-01	ci left: 2.002769e-04	ci right 2.396051e-04	k: 489	n:2230000
Cons ci ratio: 7.399049e-03	ci left: 1.113827e-01	ci right 1.122103e-01	k: 249305	n:2230000
KS ci ratio: 8.397397e-02	ci left: 9.352309e-04	ci right 1.017643e-03	k: 2176	n:2230000
DKK2   2230000 perm   2275 sec   (980 perm/sec)   p_kst 9.757848e-04   p_cons 1.117960e-01   p_joint 2.192825e-04

Joint ci ratio: 1.768877e-01	ci left: 1.998095e-04	ci right 2.390017e-04	k: 490	n:2240000
Cons ci ratio: 7.382165e-03	ci left: 1.113930e-01	ci right 1.122188e-01	k: 250444	n:2240000
KS ci ratio: 8.387779e-02	ci left: 9.332411e-04	ci right 1.015379e-03	k: 2181	n:2240000
DKK2   2240000 perm   2294 sec   (976 perm/sec)   p_kst 9.736607e-04   p_cons 1.118054e-01   p_joint 2.187500e-04

Joint ci ratio: 1.765285e-01	ci left: 1.997710e-04	ci right 2.388676e-04	k: 492	n:2250000
Cons ci ratio: 7.365661e-03	ci left: 1.113961e-01	ci right 1.122200e-01	k: 251567	n:2250000
KS ci ratio: 8.366714e-02	ci left: 9.338798e-04	ci right 1.015858e-03	k: 2192	n:2250000
DKK2   2250000 perm   2313 sec   (973 perm/sec)   p_kst 9.742222e-04   p_cons 1.118076e-01   p_joint 2.186667e-04

Joint ci ratio: 1.763498e-01	ci left: 1.993100e-04	ci right 2.382727e-04	k: 493	n:2260000
Cons ci ratio: 7.349922e-03	ci left: 1.113815e-01	ci right 1.122036e-01	k: 252650	n:2260000
KS ci ratio: 8.357201e-02	ci left: 9.319137e-04	ci right 1.013621e-03	k: 2197	n:2260000
DKK2   2260000 perm   2331 sec   (969 perm/sec)   p_kst 9.721239e-04   p_cons 1.117920e-01   p_joint 2.181416e-04

Joint ci ratio: 1.772494e-01	ci left: 1.963268e-04	ci right 2.349230e-04	k: 488	n:2270000
Cons ci ratio: 7.333420e-03	ci left: 1.113903e-01	ci right 1.122106e-01	k: 253786	n:2270000
KS ci ratio: 8.342037e-02	ci left: 9.312590e-04	ci right 1.012754e-03	k: 2205	n:2270000
DKK2   2270000 perm   2350 sec   (966 perm/sec)   p_kst 9.713656e-04   p_cons 1.118000e-01   p_joint 2.149780e-04

Joint ci ratio: 1.768880e-01	ci left: 1.963040e-04	ci right 2.348087e-04	k: 490	n:2280000
Cons ci ratio: 7.317143e-03	ci left: 1.113961e-01	ci right 1.122146e-01	k: 254915	n:2280000
KS ci ratio: 8.317559e-02	ci left: 9.327575e-04	ci right 1.014133e-03	k: 2218	n:2280000
DKK2   2280000 perm   2369 sec   (963 perm/sec)   p_kst 9.728070e-04   p_cons 1.118048e-01   p_joint 2.149123e-04

Joint ci ratio: 1.767082e-01	ci left: 1.958642e-04	ci right 2.342393e-04	k: 491	n:2290000
Cons ci ratio: 7.301744e-03	ci left: 1.113808e-01	ci right 1.121975e-01	k: 255996	n:2290000
KS ci ratio: 8.304476e-02	ci left: 9.316776e-04	ci right 1.012824e-03	k: 2225	n:2290000
DKK2   2290000 perm   2388 sec   (959 perm/sec)   p_kst 9.716157e-04   p_cons 1.117886e-01   p_joint 2.144105e-04

Joint ci ratio: 1.758170e-01	ci left: 1.970906e-04	ci right 2.354906e-04	k: 496	n:2300000
Cons ci ratio: 7.285613e-03	ci left: 1.113882e-01	ci right 1.122032e-01	k: 257129	n:2300000
KS ci ratio: 8.291454e-02	ci left: 9.306071e-04	ci right 1.011527e-03	k: 2232	n:2300000
DKK2   2300000 perm   2407 sec   (955 perm/sec)   p_kst 9.704348e-04   p_cons 1.117952e-01   p_joint 2.156522e-04

Joint ci ratio: 1.752887e-01	ci left: 1.974790e-04	ci right 2.358269e-04	k: 499	n:2310000
Cons ci ratio: 7.269603e-03	ci left: 1.113952e-01	ci right 1.122084e-01	k: 258261	n:2310000
KS ci ratio: 8.260058e-02	ci left: 9.337856e-04	ci right 1.014660e-03	k: 2249	n:2310000
DKK2   2310000 perm   2426 sec   (952 perm/sec)   p_kst 9.735931e-04   p_cons 1.118013e-01   p_joint 2.160173e-04

Joint ci ratio: 1.747652e-01	ci left: 1.978643e-04	ci right 2.361601e-04	k: 502	n:2320000
Cons ci ratio: 7.253809e-03	ci left: 1.113991e-01	ci right 1.122105e-01	k: 259386	n:2320000
KS ci ratio: 8.241763e-02	ci left: 9.339820e-04	ci right 1.014686e-03	k: 2259	n:2320000
DKK2   2320000 perm   2446 sec   (948 perm/sec)   p_kst 9.737069e-04   p_cons 1.118043e-01   p_joint 2.163793e-04

Joint ci ratio: 1.740743e-01	ci left: 1.986569e-04	ci right 2.369381e-04	k: 506	n:2330000
Cons ci ratio: 7.238728e-03	ci left: 1.113862e-01	ci right 1.121959e-01	k: 260472	n:2330000
KS ci ratio: 8.216346e-02	ci left: 9.358585e-04	ci right 1.016463e-03	k: 2273	n:2330000
DKK2   2330000 perm   2465 sec   (945 perm/sec)   p_kst 9.755365e-04   p_cons 1.117906e-01   p_joint 2.171674e-04

Joint ci ratio: 1.735616e-01	ci left: 1.990342e-04	ci right 2.372633e-04	k: 509	n:2340000
Cons ci ratio: 7.223320e-03	ci left: 1.113850e-01	ci right 1.121929e-01	k: 261585	n:2340000
KS ci ratio: 8.205534e-02	ci left: 9.343705e-04	ci right 1.014736e-03	k: 2279	n:2340000
DKK2   2340000 perm   2483 sec   (942 perm/sec)   p_kst 9.739316e-04   p_cons 1.117885e-01   p_joint 2.175214e-04

Joint ci ratio: 1.728848e-01	ci left: 1.998156e-04	ci right 2.380295e-04	k: 513	n:2350000
Cons ci ratio: 7.207532e-03	ci left: 1.113969e-01	ci right 1.122032e-01	k: 262729	n:2350000
KS ci ratio: 8.189388e-02	ci left: 9.341458e-04	ci right 1.014326e-03	k: 2288	n:2350000
DKK2   2350000 perm   2502 sec   (939 perm/sec)   p_kst 9.736170e-04   p_cons 1.117996e-01   p_joint 2.182979e-04

Joint ci ratio: 1.725495e-01	ci left: 1.997797e-04	ci right 2.379050e-04	k: 515	n:2360000
Cons ci ratio: 7.192368e-03	ci left: 1.113944e-01	ci right 1.121989e-01	k: 263839	n:2360000
KS ci ratio: 8.171558e-02	ci left: 9.343381e-04	ci right 1.014352e-03	k: 2298	n:2360000
DKK2   2360000 perm   2521 sec   (936 perm/sec)   p_kst 9.737288e-04   p_cons 1.117962e-01   p_joint 2.182203e-04

Joint ci ratio: 1.725496e-01	ci left: 1.989368e-04	ci right 2.369012e-04	k: 515	n:2370000
Cons ci ratio: 7.176934e-03	ci left: 1.114020e-01	ci right 1.122048e-01	k: 264973	n:2370000
KS ci ratio: 8.160922e-02	ci left: 9.328757e-04	ci right 1.012656e-03	k: 2304	n:2370000
DKK2   2370000 perm   2540 sec   (933 perm/sec)   p_kst 9.721519e-04   p_cons 1.118030e-01   p_joint 2.172996e-04

Joint ci ratio: 1.723826e-01	ci left: 1.985029e-04	ci right 2.363441e-04	k: 516	n:2380000
Cons ci ratio: 7.161719e-03	ci left: 1.114062e-01	ci right 1.122073e-01	k: 266099	n:2380000
KS ci ratio: 8.145037e-02	ci left: 9.326605e-04	ci right 1.012259e-03	k: 2313	n:2380000
DKK2   2380000 perm   2561 sec   (929 perm/sec)   p_kst 9.718487e-04   p_cons 1.118063e-01   p_joint 2.168067e-04

Joint ci ratio: 1.723827e-01	ci left: 1.976724e-04	ci right 2.353552e-04	k: 516	n:2390000
Cons ci ratio: 7.146090e-03	ci left: 1.114246e-01	ci right 1.122241e-01	k: 267259	n:2390000
KS ci ratio: 8.130997e-02	ci left: 9.320373e-04	ci right 1.011439e-03	k: 2321	n:2390000
DKK2   2390000 perm   2580 sec   (926 perm/sec)   p_kst 9.711297e-04   p_cons 1.118238e-01   p_joint 2.158996e-04

Joint ci ratio: 1.722163e-01	ci left: 1.972474e-04	ci right 2.348092e-04	k: 517	n:2400000
Cons ci ratio: 7.131085e-03	ci left: 1.114282e-01	ci right 1.122261e-01	k: 268384	n:2400000
KS ci ratio: 8.117029e-02	ci left: 9.314194e-04	ci right 1.010626e-03	k: 2329	n:2400000
DKK2   2400000 perm   2599 sec   (924 perm/sec)   p_kst 9.704167e-04   p_cons 1.118267e-01   p_joint 2.154167e-04

Joint ci ratio: 1.717197e-01	ci left: 1.976202e-04	ci right 2.351332e-04	k: 520	n:2410000
Cons ci ratio: 7.117023e-03	ci left: 1.114082e-01	ci right 1.122043e-01	k: 269452	n:2410000
KS ci ratio: 8.101399e-02	ci left: 9.312133e-04	ci right 1.010243e-03	k: 2338	n:2410000
DKK2   2410000 perm   2619 sec   (920 perm/sec)   p_kst 9.701245e-04   p_cons 1.118058e-01   p_joint 2.157676e-04

Joint ci ratio: 1.713911e-01	ci left: 1.975946e-04	ci right 2.350235e-04	k: 522	n:2420000
Cons ci ratio: 7.102289e-03	ci left: 1.114094e-01	ci right 1.122039e-01	k: 270571	n:2420000
KS ci ratio: 8.084136e-02	ci left: 9.314139e-04	ci right 1.010284e-03	k: 2348	n:2420000
DKK2   2420000 perm   2638 sec   (917 perm/sec)   p_kst 9.702479e-04   p_cons 1.118062e-01   p_joint 2.157025e-04

Joint ci ratio: 1.713911e-01	ci left: 1.967814e-04	ci right 2.340563e-04	k: 522	n:2430000
Cons ci ratio: 7.088131e-03	ci left: 1.113971e-01	ci right 1.121899e-01	k: 271657	n:2430000
KS ci ratio: 8.063561e-02	ci left: 9.324195e-04	ci right 1.011164e-03	k: 2360	n:2430000
DKK2   2430000 perm   2659 sec   (914 perm/sec)   p_kst 9.711934e-04   p_cons 1.117930e-01   p_joint 2.148148e-04

Joint ci ratio: 1.754653e-01	ci left: 1.865657e-04	ci right 2.228346e-04	k: 498	n:2440000
Cons ci ratio: 7.073620e-03	ci left: 1.113971e-01	ci right 1.121883e-01	k: 272773	n:2440000
KS ci ratio: 8.036367e-02	ci left: 9.350236e-04	ci right 1.013710e-03	k: 2376	n:2440000
DKK2   2440000 perm   2679 sec   (911 perm/sec)   p_kst 9.737705e-04   p_cons 1.117922e-01   p_joint 2.040984e-04

Joint ci ratio: 1.752898e-01	ci left: 1.861944e-04	ci right 2.223512e-04	k: 499	n:2450000
Cons ci ratio: 7.059313e-03	ci left: 1.113939e-01	ci right 1.121834e-01	k: 273881	n:2450000
KS ci ratio: 8.021197e-02	ci left: 9.348068e-04	ci right 1.013319e-03	k: 2385	n:2450000
DKK2   2450000 perm   2699 sec   (908 perm/sec)   p_kst 9.734694e-04   p_cons 1.117882e-01   p_joint 2.036735e-04

Joint ci ratio: 1.752899e-01	ci left: 1.854375e-04	ci right 2.214473e-04	k: 499	n:2460000
Cons ci ratio: 7.045222e-03	ci left: 1.113870e-01	ci right 1.121749e-01	k: 274980	n:2460000
KS ci ratio: 8.009461e-02	ci left: 9.337953e-04	ci right 1.012103e-03	k: 2392	n:2460000
DKK2   2460000 perm   2719 sec   (905 perm/sec)   p_kst 9.723577e-04   p_cons 1.117805e-01   p_joint 2.028455e-04

Joint ci ratio: 1.742474e-01	ci left: 1.870097e-04	ci right 2.230860e-04	k: 505	n:2470000
Cons ci ratio: 7.031044e-03	ci left: 1.113850e-01	ci right 1.121713e-01	k: 276091	n:2470000
KS ci ratio: 7.987788e-02	ci left: 9.351727e-04	ci right 1.013373e-03	k: 2405	n:2470000
DKK2   2470000 perm   2740 sec   (901 perm/sec)   p_kst 9.736842e-04   p_cons 1.117777e-01   p_joint 2.044534e-04

Joint ci ratio: 1.737331e-01	ci left: 1.874126e-04	ci right 2.234488e-04	k: 508	n:2480000
Cons ci ratio: 7.017193e-03	ci left: 1.113763e-01	ci right 1.121609e-01	k: 277185	n:2480000
KS ci ratio: 7.961350e-02	ci left: 9.377248e-04	ci right 1.015867e-03	k: 2421	n:2480000
DKK2   2480000 perm   2761 sec   (898 perm/sec)   p_kst 9.762097e-04   p_cons 1.117681e-01   p_joint 2.048387e-04

Joint ci ratio: 1.737332e-01	ci left: 1.866599e-04	ci right 2.225514e-04	k: 508	n:2490000
Cons ci ratio: 7.003197e-03	ci left: 1.113740e-01	ci right 1.121571e-01	k: 278295	n:2490000
KS ci ratio: 7.954794e-02	ci left: 9.355333e-04	ci right 1.013426e-03	k: 2425	n:2490000
DKK2   2490000 perm   2781 sec   (895 perm/sec)   p_kst 9.738956e-04   p_cons 1.117651e-01   p_joint 2.040161e-04

Joint ci ratio: 1.732234e-01	ci left: 1.870612e-04	ci right 2.229133e-04	k: 511	n:2500000
Cons ci ratio: 6.989158e-03	ci left: 1.113753e-01	ci right 1.121568e-01	k: 279414	n:2500000
KS ci ratio: 7.938449e-02	ci left: 9.357116e-04	ci right 1.013452e-03	k: 2435	n:2500000
DKK2   2500000 perm   2802 sec   (892 perm/sec)   p_kst 9.740000e-04   p_cons 1.117656e-01   p_joint 2.044000e-04

Joint ci ratio: 1.720511e-01	ci left: 1.889843e-04	ci right 2.249344e-04	k: 518	n:2510000
Cons ci ratio: 6.975860e-03	ci left: 1.113579e-01	ci right 1.121378e-01	k: 280486	n:2510000
KS ci ratio: 7.907655e-02	ci left: 9.394035e-04	ci right 1.017134e-03	k: 2454	n:2510000
DKK2   2510000 perm   2822 sec   (889 perm/sec)   p_kst 9.776892e-04   p_cons 1.117474e-01   p_joint 2.063745e-04

Joint ci ratio: 1.715559e-01	ci left: 1.893736e-04	ci right 2.252834e-04	k: 521	n:2520000
Cons ci ratio: 6.962458e-03	ci left: 1.113458e-01	ci right 1.121241e-01	k: 281571	n:2520000
KS ci ratio: 7.891599e-02	ci left: 9.395656e-04	ci right 1.017144e-03	k: 2464	n:2520000
DKK2   2520000 perm   2843 sec   (886 perm/sec)   p_kst 9.777778e-04   p_cons 1.117345e-01   p_joint 2.067460e-04

Joint ci ratio: 1.715560e-01	ci left: 1.886251e-04	ci right 2.243930e-04	k: 521	n:2530000
Cons ci ratio: 6.949492e-03	ci left: 1.113235e-01	ci right 1.121003e-01	k: 282630	n:2530000
KS ci ratio: 7.875640e-02	ci left: 9.397266e-04	ci right 1.017154e-03	k: 2474	n:2530000
DKK2   2530000 perm   2864 sec   (883 perm/sec)   p_kst 9.778656e-04   p_cons 1.117115e-01   p_joint 2.059289e-04

Joint ci ratio: 1.710651e-01	ci left: 1.890130e-04	ci right 2.247412e-04	k: 524	n:2540000
Cons ci ratio: 6.935690e-03	ci left: 1.113274e-01	ci right 1.121026e-01	k: 283755	n:2540000
KS ci ratio: 7.853453e-02	ci left: 9.414303e-04	ci right 1.018770e-03	k: 2488	n:2540000
DKK2   2540000 perm   2885 sec   (880 perm/sec)   p_kst 9.795276e-04   p_cons 1.117146e-01   p_joint 2.062992e-04

Joint ci ratio: 1.705784e-01	ci left: 1.893979e-04	ci right 2.250866e-04	k: 527	n:2550000
Cons ci ratio: 6.922229e-03	ci left: 1.113238e-01	ci right 1.120975e-01	k: 284861	n:2550000
KS ci ratio: 7.829887e-02	ci left: 9.435055e-04	ci right 1.020772e-03	k: 2503	n:2550000
DKK2   2550000 perm   2906 sec   (877 perm/sec)   p_kst 9.815686e-04   p_cons 1.117102e-01   p_joint 2.066667e-04

Joint ci ratio: 1.696173e-01	ci left: 1.909021e-04	ci right 2.266508e-04	k: 533	n:2560000
Cons ci ratio: 6.908290e-03	ci left: 1.113362e-01	ci right 1.121084e-01	k: 286008	n:2560000
KS ci ratio: 7.814298e-02	ci left: 9.436497e-04	ci right 1.020767e-03	k: 2513	n:2560000
DKK2   2560000 perm   2927 sec   (875 perm/sec)   p_kst 9.816406e-04   p_cons 1.117219e-01   p_joint 2.082031e-04

Joint ci ratio: 1.691428e-01	ci left: 1.912771e-04	ci right 2.269856e-04	k: 536	n:2570000
Cons ci ratio: 6.894948e-03	ci left: 1.113338e-01	ci right 1.121045e-01	k: 287117	n:2570000
KS ci ratio: 7.797257e-02	ci left: 9.441746e-04	ci right 1.021159e-03	k: 2524	n:2570000
DKK2   2570000 perm   2948 sec   (872 perm/sec)   p_kst 9.821012e-04   p_cons 1.117187e-01   p_joint 2.085603e-04

Joint ci ratio: 1.685163e-01	ci left: 1.920206e-04	ci right 2.277216e-04	k: 540	n:2580000
Cons ci ratio: 6.881844e-03	ci left: 1.113267e-01	ci right 1.120959e-01	k: 288214	n:2580000
KS ci ratio: 7.769600e-02	ci left: 9.473560e-04	ci right 1.024314e-03	k: 2542	n:2580000
DKK2   2580000 perm   2970 sec   (869 perm/sec)   p_kst 9.852713e-04   p_cons 1.117109e-01   p_joint 2.093023e-04

Joint ci ratio: 1.682056e-01	ci left: 1.920189e-04	ci right 2.276471e-04	k: 542	n:2590000
Cons ci ratio: 6.869015e-03	ci left: 1.113139e-01	ci right 1.120815e-01	k: 289296	n:2590000
KS ci ratio: 7.757410e-02	ci left: 9.467271e-04	ci right 1.023508e-03	k: 2550	n:2590000
DKK2   2590000 perm   2991 sec   (866 perm/sec)   p_kst 9.845560e-04   p_cons 1.116973e-01   p_joint 2.092664e-04

Joint ci ratio: 1.678967e-01	ci left: 1.920172e-04	ci right 2.275731e-04	k: 544	n:2600000
Cons ci ratio: 6.855287e-03	ci left: 1.113293e-01	ci right 1.120955e-01	k: 290451	n:2600000
KS ci ratio: 7.736205e-02	ci left: 9.483662e-04	ci right 1.025060e-03	k: 2564	n:2600000
DKK2   2600000 perm   3012 sec   (863 perm/sec)   p_kst 9.861538e-04   p_cons 1.117119e-01   p_joint 2.092308e-04

Joint ci ratio: 1.674365e-01	ci left: 1.923827e-04	ci right 2.278988e-04	k: 547	n:2610000
Cons ci ratio: 6.841892e-03	ci left: 1.113372e-01	ci right 1.121020e-01	k: 291587	n:2610000
KS ci ratio: 7.719668e-02	ci left: 9.488657e-04	ci right 1.025428e-03	k: 2575	n:2610000
DKK2   2610000 perm   3034 sec   (860 perm/sec)   p_kst 9.865900e-04   p_cons 1.117192e-01   p_joint 2.095785e-04

Joint ci ratio: 1.672840e-01	ci left: 1.920141e-04	ci right 2.274266e-04	k: 548	n:2620000
Cons ci ratio: 6.828681e-03	ci left: 1.113421e-01	ci right 1.121054e-01	k: 292715	n:2620000
KS ci ratio: 7.703237e-02	ci left: 9.493616e-04	ci right 1.025794e-03	k: 2586	n:2620000
DKK2   2620000 perm   3055 sec   (858 perm/sec)   p_kst 9.870229e-04   p_cons 1.117233e-01   p_joint 2.091603e-04

Joint ci ratio: 1.669801e-01	ci left: 1.920127e-04	ci right 2.273541e-04	k: 550	n:2630000
Cons ci ratio: 6.815611e-03	ci left: 1.113450e-01	ci right 1.121068e-01	k: 293838	n:2630000
KS ci ratio: 7.683950e-02	ci left: 9.505998e-04	ci right 1.026932e-03	k: 2599	n:2630000
DKK2   2630000 perm   3077 sec   (855 perm/sec)   p_kst 9.882129e-04   p_cons 1.117255e-01   p_joint 2.091255e-04

Joint ci ratio: 1.663772e-01	ci left: 1.927373e-04	ci right 2.280712e-04	k: 554	n:2640000
Cons ci ratio: 6.802798e-03	ci left: 1.113426e-01	ci right 1.121030e-01	k: 294947	n:2640000
KS ci ratio: 7.667745e-02	ci left: 9.510857e-04	ci right 1.027288e-03	k: 2610	n:2640000
DKK2   2640000 perm   3098 sec   (852 perm/sec)   p_kst 9.886364e-04   p_cons 1.117223e-01   p_joint 2.098485e-04

Joint ci ratio: 1.659293e-01	ci left: 1.930950e-04	ci right 2.283896e-04	k: 557	n:2650000
Cons ci ratio: 6.790108e-03	ci left: 1.113387e-01	ci right 1.120976e-01	k: 296052	n:2650000
KS ci ratio: 7.656028e-02	ci left: 9.504577e-04	ci right 1.026489e-03	k: 2618	n:2650000
DKK2   2650000 perm   3120 sec   (849 perm/sec)   p_kst 9.879245e-04   p_cons 1.117177e-01   p_joint 2.101887e-04

Joint ci ratio: 1.657809e-01	ci left: 1.927294e-04	ci right 2.279226e-04	k: 558	n:2660000
Cons ci ratio: 6.777181e-03	ci left: 1.113438e-01	ci right 1.121014e-01	k: 297181	n:2660000
KS ci ratio: 7.638546e-02	ci left: 9.513096e-04	ci right 1.027227e-03	k: 2630	n:2660000
DKK2   2660000 perm   3141 sec   (847 perm/sec)   p_kst 9.887218e-04   p_cons 1.117222e-01   p_joint 2.097744e-04

Joint ci ratio: 1.653378e-01	ci left: 1.930846e-04	ci right 2.282390e-04	k: 561	n:2670000
Cons ci ratio: 6.764085e-03	ci left: 1.113561e-01	ci right 1.121122e-01	k: 298329	n:2670000
KS ci ratio: 7.625516e-02	ci left: 9.510531e-04	ci right 1.026815e-03	k: 2639	n:2670000
DKK2   2670000 perm   3163 sec   (844 perm/sec)   p_kst 9.883895e-04   p_cons 1.117337e-01   p_joint 2.101124e-04

Joint ci ratio: 1.653379e-01	ci left: 1.923642e-04	ci right 2.273874e-04	k: 561	n:2680000
Cons ci ratio: 6.751610e-03	ci left: 1.113522e-01	ci right 1.121069e-01	k: 299434	n:2680000
KS ci ratio: 7.603937e-02	ci left: 9.529949e-04	ci right 1.028687e-03	k: 2654	n:2680000
DKK2   2680000 perm   3185 sec   (841 perm/sec)   p_kst 9.902985e-04   p_cons 1.117291e-01   p_joint 2.093284e-04

Joint ci ratio: 1.650444e-01	ci left: 1.923618e-04	ci right 2.273163e-04	k: 563	n:2690000
Cons ci ratio: 6.738964e-03	ci left: 1.113554e-01	ci right 1.121087e-01	k: 300558	n:2690000
KS ci ratio: 7.588232e-02	ci left: 9.534637e-04	ci right 1.029030e-03	k: 2665	n:2690000
DKK2   2690000 perm   3208 sec   (838 perm/sec)   p_kst 9.907063e-04   p_cons 1.117316e-01   p_joint 2.092937e-04

Joint ci ratio: 1.647526e-01	ci left: 1.923595e-04	ci right 2.272457e-04	k: 565	n:2700000
Cons ci ratio: 6.726289e-03	ci left: 1.113615e-01	ci right 1.121134e-01	k: 301690	n:2700000
KS ci ratio: 7.572624e-02	ci left: 9.539292e-04	ci right 1.029370e-03	k: 2676	n:2700000
DKK2   2700000 perm   3230 sec   (836 perm/sec)   p_kst 9.911111e-04   p_cons 1.117370e-01   p_joint 2.092593e-04

Joint ci ratio: 1.643177e-01	ci left: 1.927112e-04	ci right 2.275597e-04	k: 568	n:2710000
Cons ci ratio: 6.713597e-03	ci left: 1.113701e-01	ci right 1.121207e-01	k: 302829	n:2710000
KS ci ratio: 7.555705e-02	ci left: 9.547535e-04	ci right 1.030083e-03	k: 2688	n:2710000
DKK2   2710000 perm   3253 sec   (833 perm/sec)   p_kst 9.918819e-04   p_cons 1.117450e-01   p_joint 2.095941e-04

Joint ci ratio: 1.662280e-01	ci left: 1.874209e-04	ci right 2.217462e-04	k: 555	n:2720000
Cons ci ratio: 6.700965e-03	ci left: 1.113791e-01	ci right 1.121283e-01	k: 303969	n:2720000
KS ci ratio: 7.536107e-02	ci left: 9.562933e-04	ci right 1.031540e-03	k: 2702	n:2720000
DKK2   2720000 perm   3275 sec   (830 perm/sec)   p_kst 9.933824e-04   p_cons 1.117533e-01   p_joint 2.040441e-04

Joint ci ratio: 1.662281e-01	ci left: 1.867343e-04	ci right 2.209340e-04	k: 555	n:2730000
Cons ci ratio: 6.688811e-03	ci left: 1.113759e-01	ci right 1.121238e-01	k: 305076	n:2730000
KS ci ratio: 7.523593e-02	ci left: 9.560250e-04	ci right 1.031121e-03	k: 2711	n:2730000
DKK2   2730000 perm   3298 sec   (828 perm/sec)   p_kst 9.930403e-04   p_cons 1.117495e-01   p_joint 2.032967e-04

Joint ci ratio: 1.659299e-01	ci left: 1.867524e-04	ci right 2.208879e-04	k: 557	n:2740000
Cons ci ratio: 6.676760e-03	ci left: 1.113717e-01	ci right 1.121182e-01	k: 306180	n:2740000
KS ci ratio: 7.508380e-02	ci left: 9.564750e-04	ci right 1.031447e-03	k: 2722	n:2740000
DKK2   2740000 perm   3321 sec   (825 perm/sec)   p_kst 9.934307e-04   p_cons 1.117445e-01   p_joint 2.032847e-04

Joint ci ratio: 1.656333e-01	ci left: 1.867704e-04	ci right 2.208421e-04	k: 559	n:2750000
Cons ci ratio: 6.664932e-03	ci left: 1.113628e-01	ci right 1.121078e-01	k: 307271	n:2750000
KS ci ratio: 7.497378e-02	ci left: 9.558515e-04	ci right 1.030660e-03	k: 2730	n:2750000
DKK2   2750000 perm   3344 sec   (822 perm/sec)   p_kst 9.927273e-04   p_cons 1.117349e-01   p_joint 2.032727e-04

Joint ci ratio: 1.650449e-01	ci left: 1.874830e-04	ci right 2.215511e-04	k: 563	n:2760000
Cons ci ratio: 6.653058e-03	ci left: 1.113572e-01	ci right 1.121009e-01	k: 308371	n:2760000
KS ci ratio: 7.483689e-02	ci left: 9.559435e-04	ci right 1.030617e-03	k: 2740	n:2760000
DKK2   2760000 perm   3367 sec   (820 perm/sec)   p_kst 9.927536e-04   p_cons 1.117286e-01   p_joint 2.039855e-04

Joint ci ratio: 1.656335e-01	ci left: 1.854219e-04	ci right 2.192475e-04	k: 559	n:2770000
Cons ci ratio: 6.640558e-03	ci left: 1.113722e-01	ci right 1.121146e-01	k: 309528	n:2770000
KS ci ratio: 7.466001e-02	ci left: 9.570979e-04	ci right 1.031677e-03	k: 2753	n:2770000
DKK2   2770000 perm   3390 sec   (817 perm/sec)   p_kst 9.938628e-04   p_cons 1.117430e-01   p_joint 2.018051e-04

Joint ci ratio: 1.650450e-01	ci left: 1.861342e-04	ci right 2.199572e-04	k: 563	n:2780000
Cons ci ratio: 6.628753e-03	ci left: 1.113684e-01	ci right 1.121094e-01	k: 310633	n:2780000
KS ci ratio: 7.449785e-02	ci left: 9.578912e-04	ci right 1.032363e-03	k: 2765	n:2780000
DKK2   2780000 perm   3413 sec   (815 perm/sec)   p_kst 9.946043e-04   p_cons 1.117385e-01   p_joint 2.025180e-04

Joint ci ratio: 1.709040e-01	ci left: 1.724193e-04	ci right 2.049770e-04	k: 525	n:2790000
Cons ci ratio: 6.616963e-03	ci left: 1.113660e-01	ci right 1.121057e-01	k: 311742	n:2790000
KS ci ratio: 7.440380e-02	ci left: 9.569201e-04	ci right 1.031219e-03	k: 2772	n:2790000
DKK2   2790000 perm   3436 sec   (812 perm/sec)   p_kst 9.935484e-04   p_cons 1.117355e-01   p_joint 1.881720e-04

Joint ci ratio: 1.709040e-01	ci left: 1.718035e-04	ci right 2.042450e-04	k: 525	n:2800000
Cons ci ratio: 6.605462e-03	ci left: 1.113569e-01	ci right 1.120953e-01	k: 312832	n:2800000
KS ci ratio: 7.435028e-02	ci left: 9.549045e-04	ci right 1.028991e-03	k: 2776	n:2800000
DKK2   2800000 perm   3459 sec   (810 perm/sec)   p_kst 9.914286e-04   p_cons 1.117257e-01   p_joint 1.875000e-04

Joint ci ratio: 1.717224e-01	ci left: 1.694890e-04	ci right 2.016626e-04	k: 520	n:2810000
Cons ci ratio: 6.593796e-03	ci left: 1.113547e-01	ci right 1.120917e-01	k: 313941	n:2810000
KS ci ratio: 7.415022e-02	ci left: 9.567453e-04	ci right 1.030766e-03	k: 2791	n:2810000
DKK2   2810000 perm   3481 sec   (807 perm/sec)   p_kst 9.932384e-04   p_cons 1.117228e-01   p_joint 1.850534e-04

Joint ci ratio: 1.713937e-01	ci left: 1.695668e-04	ci right 2.016871e-04	k: 522	n:2820000
Cons ci ratio: 6.582203e-03	ci left: 1.113521e-01	ci right 1.120878e-01	k: 315049	n:2820000
KS ci ratio: 7.396495e-02	ci left: 9.582252e-04	ci right 1.032167e-03	k: 2805	n:2820000
DKK2   2820000 perm   3504 sec   (805 perm/sec)   p_kst 9.946809e-04   p_cons 1.117195e-01   p_joint 1.851064e-04

Joint ci ratio: 1.707420e-01	ci left: 1.703205e-04	ci right 2.024483e-04	k: 526	n:2830000
Cons ci ratio: 6.570448e-03	ci left: 1.113562e-01	ci right 1.120906e-01	k: 316176	n:2830000
KS ci ratio: 7.375489e-02	ci left: 9.603886e-04	ci right 1.034278e-03	k: 2821	n:2830000
DKK2   2830000 perm   3527 sec   (802 perm/sec)   p_kst 9.968198e-04   p_cons 1.117230e-01   p_joint 1.858657e-04

Joint ci ratio: 1.704189e-01	ci left: 1.703949e-04	ci right 2.024697e-04	k: 528	n:2840000
Cons ci ratio: 6.557873e-03	ci left: 1.113870e-01	ci right 1.121202e-01	k: 317379	n:2840000
KS ci ratio: 7.363758e-02	ci left: 9.601175e-04	ci right 1.033864e-03	k: 2830	n:2840000
DKK2   2840000 perm   3551 sec   (800 perm/sec)   p_kst 9.964789e-04   p_cons 1.117532e-01   p_joint 1.859155e-04

Joint ci ratio: 1.735650e-01	ci left: 1.634173e-04	ci right 1.948060e-04	k: 509	n:2850000
Cons ci ratio: 6.546618e-03	ci left: 1.113797e-01	ci right 1.121116e-01	k: 318474	n:2850000
KS ci ratio: 7.355972e-02	ci left: 9.588152e-04	ci right 1.032380e-03	k: 2836	n:2850000
DKK2   2850000 perm   3573 sec   (798 perm/sec)   p_kst 9.950877e-04   p_cons 1.117453e-01   p_joint 1.785965e-04

Joint ci ratio: 1.728882e-01	ci left: 1.641839e-04	ci right 1.955840e-04	k: 513	n:2860000
Cons ci ratio: 6.535663e-03	ci left: 1.113652e-01	ci right 1.120957e-01	k: 319548	n:2860000
KS ci ratio: 7.335308e-02	ci left: 9.609544e-04	ci right 1.034468e-03	k: 2852	n:2860000
DKK2   2860000 perm   3596 sec   (795 perm/sec)   p_kst 9.972028e-04   p_cons 1.117301e-01   p_joint 1.793706e-04

Joint ci ratio: 1.720533e-01	ci left: 1.652788e-04	ci right 1.967198e-04	k: 518	n:2870000
Cons ci ratio: 6.524374e-03	ci left: 1.113626e-01	ci right 1.120919e-01	k: 320656	n:2870000
KS ci ratio: 7.319928e-02	ci left: 9.617107e-04	ci right 1.035121e-03	k: 2864	n:2870000
DKK2   2870000 perm   3620 sec   (793 perm/sec)   p_kst 9.979094e-04   p_cons 1.117268e-01   p_joint 1.804878e-04

Joint ci ratio: 1.720534e-01	ci left: 1.647049e-04	ci right 1.960368e-04	k: 518	n:2880000
Cons ci ratio: 6.513256e-03	ci left: 1.113565e-01	ci right 1.120845e-01	k: 321754	n:2880000
KS ci ratio: 7.308459e-02	ci left: 9.614393e-04	ci right 1.034709e-03	k: 2873	n:2880000
DKK2   2880000 perm   3643 sec   (790 perm/sec)   p_kst 9.975694e-04   p_cons 1.117201e-01   p_joint 1.798611e-04

Joint ci ratio: 1.717228e-01	ci left: 1.647972e-04	ci right 1.960803e-04	k: 520	n:2890000
Cons ci ratio: 6.501708e-03	ci left: 1.113654e-01	ci right 1.120921e-01	k: 322895	n:2890000
KS ci ratio: 7.291982e-02	ci left: 9.625287e-04	ci right 1.035709e-03	k: 2886	n:2890000
DKK2   2890000 perm   3667 sec   (788 perm/sec)   p_kst 9.986159e-04   p_cons 1.117284e-01   p_joint 1.799308e-04

Joint ci ratio: 1.713941e-01	ci left: 1.648890e-04	ci right 1.961234e-04	k: 522	n:2900000
Cons ci ratio: 6.491079e-03	ci left: 1.113480e-01	ci right 1.120735e-01	k: 323960	n:2900000
KS ci ratio: 7.284421e-02	ci left: 9.612408e-04	ci right 1.034244e-03	k: 2892	n:2900000
DKK2   2900000 perm   3690 sec   (786 perm/sec)   p_kst 9.972414e-04   p_cons 1.117103e-01   p_joint 1.800000e-04

Joint ci ratio: 1.712305e-01	ci left: 1.646513e-04	ci right 1.958078e-04	k: 523	n:2910000
Cons ci ratio: 6.480130e-03	ci left: 1.113421e-01	ci right 1.120663e-01	k: 325058	n:2910000
KS ci ratio: 7.269358e-02	ci left: 9.619863e-04	ci right 1.034889e-03	k: 2904	n:2910000
DKK2   2910000 perm   3714 sec   (784 perm/sec)   p_kst 9.979381e-04   p_cons 1.117038e-01   p_joint 1.797251e-04

Joint ci ratio: 1.710674e-01	ci left: 1.644152e-04	ci right 1.954943e-04	k: 524	n:2920000
Cons ci ratio: 6.468980e-03	ci left: 1.113440e-01	ci right 1.120670e-01	k: 326179	n:2920000
KS ci ratio: 7.254387e-02	ci left: 9.627268e-04	ci right 1.035529e-03	k: 2916	n:2920000
DKK2   2920000 perm   3738 sec   (781 perm/sec)   p_kst 9.986301e-04   p_cons 1.117051e-01   p_joint 1.794521e-04

Joint ci ratio: 1.702585e-01	ci left: 1.654877e-04	ci right 1.966064e-04	k: 529	n:2930000
Cons ci ratio: 6.457988e-03	ci left: 1.113429e-01	ci right 1.120647e-01	k: 327291	n:2930000
KS ci ratio: 7.234566e-02	ci left: 9.648029e-04	ci right 1.037554e-03	k: 2932	n:2930000
DKK2   2930000 perm   3762 sec   (779 perm/sec)   p_kst 1.000683e-03   p_cons 1.117034e-01   p_joint 1.805461e-04

Joint ci ratio: 1.700981e-01	ci left: 1.652504e-04	ci right 1.962923e-04	k: 530	n:2940000
Cons ci ratio: 6.447029e-03	ci left: 1.113425e-01	ci right 1.120630e-01	k: 328405	n:2940000
KS ci ratio: 7.225952e-02	ci left: 9.638592e-04	ci right 1.036449e-03	k: 2939	n:2940000
DKK2   2940000 perm   3786 sec   (777 perm/sec)   p_kst 9.996599e-04   p_cons 1.117024e-01   p_joint 1.802721e-04

Joint ci ratio: 1.707426e-01	ci left: 1.633922e-04	ci right 1.942132e-04	k: 526	n:2950000
Cons ci ratio: 6.436874e-03	ci left: 1.113191e-01	ci right 1.120383e-01	k: 329451	n:2950000
KS ci ratio: 7.216143e-02	ci left: 9.632547e-04	ci right 1.035697e-03	k: 2947	n:2950000
DKK2   2950000 perm   3810 sec   (774 perm/sec)   p_kst 9.989831e-04   p_cons 1.116783e-01   p_joint 1.783051e-04

Joint ci ratio: 1.700982e-01	ci left: 1.641339e-04	ci right 1.949660e-04	k: 530	n:2960000
Cons ci ratio: 6.426066e-03	ci left: 1.113174e-01	ci right 1.120354e-01	k: 330561	n:2960000
KS ci ratio: 7.199064e-02	ci left: 9.646450e-04	ci right 1.037013e-03	k: 2961	n:2960000
DKK2   2960000 perm   3834 sec   (772 perm/sec)   p_kst 1.000338e-03   p_cons 1.116760e-01   p_joint 1.790541e-04

Joint ci ratio: 1.696197e-01	ci left: 1.645484e-04	ci right 1.953625e-04	k: 533	n:2970000
Cons ci ratio: 6.415323e-03	ci left: 1.113154e-01	ci right 1.120322e-01	k: 331670	n:2970000
KS ci ratio: 7.182106e-02	ci left: 9.660261e-04	ci right 1.038319e-03	k: 2975	n:2970000
DKK2   2970000 perm   3859 sec   (770 perm/sec)   p_kst 1.001684e-03   p_cons 1.116734e-01   p_joint 1.794613e-04

Joint ci ratio: 1.691452e-01	ci left: 1.649603e-04	ci right 1.957563e-04	k: 536	n:2980000
Cons ci ratio: 6.404688e-03	ci left: 1.113117e-01	ci right 1.120273e-01	k: 332774	n:2980000
KS ci ratio: 7.170070e-02	ci left: 9.660799e-04	ci right 1.038251e-03	k: 2985	n:2980000
DKK2   2980000 perm   3883 sec   (767 perm/sec)   p_kst 1.001678e-03   p_cons 1.116691e-01   p_joint 1.798658e-04

Joint ci ratio: 1.688311e-01	ci left: 1.650492e-04	ci right 1.957987e-04	k: 538	n:2990000
Cons ci ratio: 6.394601e-03	ci left: 1.112927e-01	ci right 1.120070e-01	k: 333832	n:2990000
KS ci ratio: 7.159290e-02	ci left: 9.658050e-04	ci right 1.037843e-03	k: 2994	n:2990000
DKK2   2990000 perm   3907 sec   (765 perm/sec)   p_kst 1.001338e-03   p_cons 1.116495e-01   p_joint 1.799331e-04

Joint ci ratio: 1.539755e-01	ci left: 1.993682e-04	ci right 2.329423e-04	k: 647	n:3000000
Cons ci ratio: 6.383382e-03	ci left: 1.113105e-01	ci right 1.120236e-01	k: 335000	n:3000000
KS ci ratio: 7.144988e-02	ci left: 9.665141e-04	ci right 1.038455e-03	k: 3006	n:3000000
DKK2   3000000 perm   3932 sec   (763 perm/sec)   p_kst 1.002000e-03   p_cons 1.116667e-01   p_joint 2.156667e-04

Joint ci ratio: 1.539755e-01	ci left: 1.987058e-04	ci right 2.321684e-04	k: 647	n:3010000
Cons ci ratio: 6.372980e-03	ci left: 1.113045e-01	ci right 1.120165e-01	k: 336097	n:3010000
KS ci ratio: 7.131954e-02	ci left: 9.668924e-04	ci right 1.038724e-03	k: 3017	n:3010000
DKK2   3010000 perm   3957 sec   (761 perm/sec)   p_kst 1.002326e-03   p_cons 1.116601e-01   p_joint 2.149502e-04

Joint ci ratio: 1.537385e-01	ci left: 1.986846e-04	ci right 2.320873e-04	k: 649	n:3020000
Cons ci ratio: 6.362702e-03	ci left: 1.112963e-01	ci right 1.120071e-01	k: 337187	n:3020000
KS ci ratio: 7.124880e-02	ci left: 9.656420e-04	ci right 1.037307e-03	k: 3023	n:3020000
DKK2   3020000 perm   3981 sec   (759 perm/sec)   p_kst 1.000993e-03   p_cons 1.116513e-01   p_joint 2.149007e-04

Joint ci ratio: 1.537385e-01	ci left: 1.980289e-04	ci right 2.313214e-04	k: 649	n:3030000
Cons ci ratio: 6.351988e-03	ci left: 1.113033e-01	ci right 1.120129e-01	k: 338323	n:3030000
KS ci ratio: 7.109611e-02	ci left: 9.666692e-04	ci right 1.038250e-03	k: 3036	n:3030000
DKK2   3030000 perm   4006 sec   (756 perm/sec)   p_kst 1.001980e-03   p_cons 1.116578e-01   p_joint 2.141914e-04

Joint ci ratio: 1.533850e-01	ci left: 1.983264e-04	ci right 2.315852e-04	k: 652	n:3040000
Cons ci ratio: 6.341654e-03	ci left: 1.113001e-01	ci right 1.120085e-01	k: 339428	n:3040000
KS ci ratio: 7.101435e-02	ci left: 9.657511e-04	ci right 1.037179e-03	k: 3043	n:3040000
DKK2   3040000 perm   4031 sec   (754 perm/sec)   p_kst 1.000987e-03   p_cons 1.116539e-01   p_joint 2.144737e-04

Joint ci ratio: 1.532677e-01	ci left: 1.979914e-04	ci right 2.311663e-04	k: 653	n:3050000
Cons ci ratio: 6.331140e-03	ci left: 1.113041e-01	ci right 1.120114e-01	k: 340555	n:3050000
KS ci ratio: 7.090961e-02	ci left: 9.654831e-04	ci right 1.036781e-03	k: 3052	n:3050000
DKK2   3050000 perm   4055 sec   (752 perm/sec)   p_kst 1.000656e-03   p_cons 1.116574e-01   p_joint 2.140984e-04

Joint ci ratio: 1.530339e-01	ci left: 1.979730e-04	ci right 2.310895e-04	k: 655	n:3060000
Cons ci ratio: 6.321240e-03	ci left: 1.112905e-01	ci right 1.119965e-01	k: 341628	n:3060000
KS ci ratio: 7.079377e-02	ci left: 9.655380e-04	ci right 1.036719e-03	k: 3062	n:3060000
DKK2   3060000 perm   4081 sec   (750 perm/sec)   p_kst 1.000654e-03   p_cons 1.116431e-01   p_joint 2.140523e-04

Joint ci ratio: 1.530339e-01	ci left: 1.973281e-04	ci right 2.303368e-04	k: 655	n:3070000
Cons ci ratio: 6.311273e-03	ci left: 1.112805e-01	ci right 1.119854e-01	k: 342712	n:3070000
KS ci ratio: 7.060952e-02	ci left: 9.675126e-04	ci right 1.038646e-03	k: 3078	n:3070000
DKK2   3070000 perm   4105 sec   (748 perm/sec)   p_kst 1.002606e-03   p_cons 1.116326e-01   p_joint 2.133550e-04

Joint ci ratio: 1.548146e-01	ci left: 1.920048e-04	ci right 2.245314e-04	k: 640	n:3080000
Cons ci ratio: 6.300868e-03	ci left: 1.112858e-01	ci right 1.119896e-01	k: 343843	n:3080000
KS ci ratio: 7.051799e-02	ci left: 9.669229e-04	ci right 1.037917e-03	k: 3086	n:3080000
DKK2   3080000 perm   4133 sec   (745 perm/sec)   p_kst 1.001948e-03   p_cons 1.116373e-01   p_joint 2.077922e-04

Joint ci ratio: 1.544535e-01	ci left: 1.923167e-04	ci right 2.248132e-04	k: 643	n:3090000
Cons ci ratio: 6.290627e-03	ci left: 1.112876e-01	ci right 1.119902e-01	k: 344963	n:3090000
KS ci ratio: 7.035858e-02	ci left: 9.682446e-04	ci right 1.039168e-03	k: 3100	n:3090000
DKK2   3090000 perm   4159 sec   (743 perm/sec)   p_kst 1.003236e-03   p_cons 1.116385e-01   p_joint 2.080906e-04

Joint ci ratio: 1.539760e-01	ci left: 1.929369e-04	ci right 2.254281e-04	k: 647	n:3100000
Cons ci ratio: 6.280170e-03	ci left: 1.112977e-01	ci right 1.119992e-01	k: 346109	n:3100000
KS ci ratio: 7.026803e-02	ci left: 9.676565e-04	ci right 1.038442e-03	k: 3108	n:3100000
DKK2   3100000 perm   4184 sec   (741 perm/sec)   p_kst 1.002581e-03   p_cons 1.116481e-01   p_joint 2.087097e-04

Joint ci ratio: 1.538574e-01	ci left: 1.926257e-04	ci right 2.250371e-04	k: 648	n:3110000
Cons ci ratio: 6.270121e-03	ci left: 1.112965e-01	ci right 1.119968e-01	k: 347220	n:3110000
KS ci ratio: 7.017782e-02	ci left: 9.670723e-04	ci right 1.037721e-03	k: 3116	n:3110000
DKK2   3110000 perm   4210 sec   (739 perm/sec)   p_kst 1.001929e-03   p_cons 1.116463e-01   p_joint 2.083601e-04

Joint ci ratio: 1.538574e-01	ci left: 1.920083e-04	ci right 2.243159e-04	k: 648	n:3120000
Cons ci ratio: 6.259250e-03	ci left: 1.113228e-01	ci right 1.120221e-01	k: 348417	n:3120000
KS ci ratio: 7.009918e-02	ci left: 9.661769e-04	ci right 1.036678e-03	k: 3123	n:3120000
DKK2   3120000 perm   4235 sec   (737 perm/sec)   p_kst 1.000962e-03   p_cons 1.116721e-01   p_joint 2.076923e-04

Joint ci ratio: 1.536209e-01	ci left: 1.920092e-04	ci right 2.242627e-04	k: 650	n:3130000
Cons ci ratio: 6.249693e-03	ci left: 1.113091e-01	ci right 1.120073e-01	k: 349489	n:3130000
KS ci ratio: 6.998726e-02	ci left: 9.662290e-04	ci right 1.036616e-03	k: 3133	n:3130000
DKK2   3130000 perm   4260 sec   (735 perm/sec)   p_kst 1.000958e-03   p_cons 1.116578e-01   p_joint 2.076677e-04

Joint ci ratio: 1.543340e-01	ci left: 1.895605e-04	ci right 2.215642e-04	k: 644	n:3140000
Cons ci ratio: 6.240000e-03	ci left: 1.113012e-01	ci right 1.119982e-01	k: 350579	n:3140000
KS ci ratio: 6.984252e-02	ci left: 9.672196e-04	ci right 1.037527e-03	k: 3146	n:3140000
DKK2   3140000 perm   4286 sec   (733 perm/sec)   p_kst 1.001911e-03   p_cons 1.116494e-01   p_joint 2.050955e-04

Joint ci ratio: 1.540953e-01	ci left: 1.895692e-04	ci right 2.215202e-04	k: 646	n:3150000
Cons ci ratio: 6.230212e-03	ci left: 1.112978e-01	ci right 1.119937e-01	k: 351683	n:3150000
KS ci ratio: 6.975394e-02	ci left: 9.666444e-04	ci right 1.036818e-03	k: 3154	n:3150000
DKK2   3150000 perm   4311 sec   (731 perm/sec)   p_kst 1.001270e-03   p_cons 1.116454e-01   p_joint 2.050794e-04

Joint ci ratio: 1.600181e-01	ci left: 1.746801e-04	ci right 2.053620e-04	k: 599	n:3160000
Cons ci ratio: 6.219983e-03	ci left: 1.113099e-01	ci right 1.120047e-01	k: 352836	n:3160000
KS ci ratio: 6.964365e-02	ci left: 9.666948e-04	ci right 1.036756e-03	k: 3164	n:3160000
DKK2   3160000 perm   4337 sec   (729 perm/sec)   p_kst 1.001266e-03   p_cons 1.116570e-01   p_joint 1.895570e-04

Joint ci ratio: 1.600182e-01	ci left: 1.741290e-04	ci right 2.047142e-04	k: 599	n:3170000
Cons ci ratio: 6.209588e-03	ci left: 1.113289e-01	ci right 1.120226e-01	k: 354011	n:3170000
KS ci ratio: 6.954486e-02	ci left: 9.664350e-04	ci right 1.036374e-03	k: 3173	n:3170000
DKK2   3170000 perm   4362 sec   (727 perm/sec)   p_kst 1.000946e-03   p_cons 1.116754e-01   p_joint 1.889590e-04

Joint ci ratio: 1.597521e-01	ci left: 1.741852e-04	ci right 2.047245e-04	k: 601	n:3180000
Cons ci ratio: 6.199844e-03	ci left: 1.113285e-01	ci right 1.120212e-01	k: 355125	n:3180000
KS ci ratio: 6.949020e-02	ci left: 9.649409e-04	ci right 1.034715e-03	k: 3178	n:3180000
DKK2   3180000 perm   4388 sec   (725 perm/sec)   p_kst 9.993711e-04   p_cons 1.116745e-01   p_joint 1.889937e-04

Joint ci ratio: 1.593555e-01	ci left: 1.745421e-04	ci right 2.050607e-04	k: 604	n:3190000
Cons ci ratio: 6.189979e-03	ci left: 1.113336e-01	ci right 1.120251e-01	k: 356256	n:3190000
KS ci ratio: 6.934851e-02	ci left: 9.659205e-04	ci right 1.035617e-03	k: 3191	n:3190000
DKK2   3190000 perm   4414 sec   (723 perm/sec)   p_kst 1.000313e-03   p_cons 1.116790e-01   p_joint 1.893417e-04

Joint ci ratio: 1.592240e-01	ci left: 1.742967e-04	ci right 2.047448e-04	k: 605	n:3200000
Cons ci ratio: 6.180687e-03	ci left: 1.113217e-01	ci right 1.120122e-01	k: 357333	n:3200000
KS ci ratio: 6.919689e-02	ci left: 9.672013e-04	ci right 1.036832e-03	k: 3205	n:3200000
DKK2   3200000 perm   4440 sec   (721 perm/sec)   p_kst 1.001563e-03   p_cons 1.116666e-01   p_joint 1.890625e-04

Joint ci ratio: 1.590928e-01	ci left: 1.740528e-04	ci right 2.044309e-04	k: 606	n:3210000
Cons ci ratio: 6.170865e-03	ci left: 1.113282e-01	ci right 1.120176e-01	k: 358469	n:3210000
KS ci ratio: 6.907847e-02	ci left: 9.675557e-04	ci right 1.037088e-03	k: 3216	n:3210000
DKK2   3210000 perm   4466 sec   (719 perm/sec)   p_kst 1.001869e-03   p_cons 1.116726e-01   p_joint 1.887850e-04

Joint ci ratio: 1.590929e-01	ci left: 1.735123e-04	ci right 2.037961e-04	k: 606	n:3220000
Cons ci ratio: 6.161611e-03	ci left: 1.113180e-01	ci right 1.120063e-01	k: 359551	n:3220000
KS ci ratio: 6.903563e-02	ci left: 9.657716e-04	ci right 1.035131e-03	k: 3220	n:3220000
DKK2   3220000 perm   4492 sec   (717 perm/sec)   p_kst 1.000000e-03   p_cons 1.116618e-01   p_joint 1.881988e-04

Joint ci ratio: 1.589620e-01	ci left: 1.732723e-04	ci right 2.034870e-04	k: 607	n:3230000
Cons ci ratio: 6.151678e-03	ci left: 1.113310e-01	ci right 1.120183e-01	k: 360708	n:3230000
KS ci ratio: 6.892872e-02	ci left: 9.658242e-04	ci right 1.035075e-03	k: 3230	n:3230000
DKK2   3230000 perm   4519 sec   (715 perm/sec)   p_kst 1.000000e-03   p_cons 1.116743e-01   p_joint 1.879257e-04

Joint ci ratio: 1.584416e-01	ci left: 1.739231e-04	ci right 2.041425e-04	k: 611	n:3240000
Cons ci ratio: 6.142652e-03	ci left: 1.113162e-01	ci right 1.120024e-01	k: 361775	n:3240000
KS ci ratio: 6.877982e-02	ci left: 9.670899e-04	ci right 1.036276e-03	k: 3244	n:3240000
DKK2   3240000 perm   4545 sec   (713 perm/sec)   p_kst 1.001235e-03   p_cons 1.116590e-01   p_joint 1.885802e-04

Joint ci ratio: 1.581834e-01	ci left: 1.739790e-04	ci right 2.041541e-04	k: 613	n:3250000
Cons ci ratio: 6.134019e-03	ci left: 1.112901e-01	ci right 1.119752e-01	k: 362805	n:3250000
KS ci ratio: 6.870579e-02	ci left: 9.662310e-04	ci right 1.035278e-03	k: 3251	n:3250000
DKK2   3250000 perm   4572 sec   (711 perm/sec)   p_kst 1.000308e-03   p_cons 1.116323e-01   p_joint 1.886154e-04

Joint ci ratio: 1.577983e-01	ci left: 1.743291e-04	ci right 2.044845e-04	k: 616	n:3260000
Cons ci ratio: 6.124389e-03	ci left: 1.112976e-01	ci right 1.119816e-01	k: 363944	n:3260000
KS ci ratio: 6.854783e-02	ci left: 9.677894e-04	ci right 1.036783e-03	k: 3266	n:3260000
DKK2   3260000 perm   4598 sec   (709 perm/sec)   p_kst 1.001840e-03   p_cons 1.116393e-01   p_joint 1.889571e-04

Joint ci ratio: 1.576706e-01	ci left: 1.740898e-04	ci right 2.041770e-04	k: 617	n:3270000
Cons ci ratio: 6.114908e-03	ci left: 1.113017e-01	ci right 1.119846e-01	k: 365072	n:3270000
KS ci ratio: 6.845362e-02	ci left: 9.675350e-04	ci right 1.036412e-03	k: 3275	n:3270000
DKK2   3270000 perm   4624 sec   (707 perm/sec)   p_kst 1.001529e-03   p_cons 1.116428e-01   p_joint 1.886850e-04

Joint ci ratio: 1.576706e-01	ci left: 1.735590e-04	ci right 2.035545e-04	k: 617	n:3280000
Cons ci ratio: 6.105301e-03	ci left: 1.113112e-01	ci right 1.119932e-01	k: 366218	n:3280000
KS ci ratio: 6.838063e-02	ci left: 9.666828e-04	ci right 1.035423e-03	k: 3282	n:3280000
DKK2   3280000 perm   4651 sec   (705 perm/sec)   p_kst 1.000610e-03   p_cons 1.116518e-01   p_joint 1.881098e-04

Joint ci ratio: 1.574161e-01	ci left: 1.736154e-04	ci right 2.035677e-04	k: 619	n:3290000
Cons ci ratio: 6.096039e-03	ci left: 1.113109e-01	ci right 1.119919e-01	k: 367332	n:3290000
KS ci ratio: 6.829749e-02	ci left: 9.661346e-04	ci right 1.034749e-03	k: 3290	n:3290000
DKK2   3290000 perm   4677 sec   (703 perm/sec)   p_kst 1.000000e-03   p_cons 1.116511e-01   p_joint 1.881459e-04

Joint ci ratio: 1.574162e-01	ci left: 1.730893e-04	ci right 2.029508e-04	k: 619	n:3300000
Cons ci ratio: 6.086717e-03	ci left: 1.113140e-01	ci right 1.119939e-01	k: 368457	n:3300000
KS ci ratio: 6.815264e-02	ci left: 9.673770e-04	ci right 1.035928e-03	k: 3304	n:3300000
DKK2   3300000 perm   4704 sec   (702 perm/sec)   p_kst 1.001212e-03   p_cons 1.116536e-01   p_joint 1.875758e-04

Joint ci ratio: 1.572894e-01	ci left: 1.728566e-04	ci right 2.026517e-04	k: 620	n:3310000
Cons ci ratio: 6.077354e-03	ci left: 1.113198e-01	ci right 1.119987e-01	k: 369591	n:3310000
KS ci ratio: 6.804977e-02	ci left: 9.674241e-04	ci right 1.035871e-03	k: 3314	n:3310000
DKK2   3310000 perm   4731 sec   (700 perm/sec)   p_kst 1.001208e-03   p_cons 1.116589e-01   p_joint 1.873112e-04

Joint ci ratio: 1.569108e-01	ci left: 1.732040e-04	ci right 2.029804e-04	k: 623	n:3320000
Cons ci ratio: 6.068274e-03	ci left: 1.113177e-01	ci right 1.119956e-01	k: 370699	n:3320000
KS ci ratio: 6.793714e-02	ci left: 9.677671e-04	ci right 1.036120e-03	k: 3325	n:3320000
DKK2   3320000 perm   4758 sec   (698 perm/sec)   p_kst 1.001506e-03   p_cons 1.116563e-01   p_joint 1.876506e-04

Joint ci ratio: 1.569109e-01	ci left: 1.726839e-04	ci right 2.023708e-04	k: 623	n:3330000
Cons ci ratio: 6.059133e-03	ci left: 1.113190e-01	ci right 1.119958e-01	k: 371818	n:3330000
KS ci ratio: 6.775396e-02	ci left: 9.701747e-04	ci right 1.038506e-03	k: 3343	n:3330000
DKK2   3330000 perm   4784 sec   (696 perm/sec)   p_kst 1.003904e-03   p_cons 1.116571e-01   p_joint 1.870871e-04

Joint ci ratio: 1.566600e-01	ci left: 1.727422e-04	ci right 2.023872e-04	k: 625	n:3340000
Cons ci ratio: 6.050079e-03	ci left: 1.113187e-01	ci right 1.119945e-01	k: 372932	n:3340000
KS ci ratio: 6.759239e-02	ci left: 9.719793e-04	ci right 1.040268e-03	k: 3359	n:3340000
DKK2   3340000 perm   4812 sec   (694 perm/sec)   p_kst 1.005689e-03   p_cons 1.116563e-01   p_joint 1.871257e-04

Joint ci ratio: 1.564103e-01	ci left: 1.728002e-04	ci right 2.024035e-04	k: 627	n:3350000
Cons ci ratio: 6.041320e-03	ci left: 1.113101e-01	ci right 1.119849e-01	k: 374018	n:3350000
KS ci ratio: 6.746198e-02	ci left: 9.728930e-04	ci right 1.041109e-03	k: 3372	n:3350000
DKK2   3350000 perm   4840 sec   (692 perm/sec)   p_kst 1.006567e-03   p_cons 1.116472e-01   p_joint 1.871642e-04

Joint ci ratio: 1.564104e-01	ci left: 1.722859e-04	ci right 2.018011e-04	k: 627	n:3360000
Cons ci ratio: 6.032563e-03	ci left: 1.113027e-01	ci right 1.119765e-01	k: 375108	n:3360000
KS ci ratio: 6.734228e-02	ci left: 9.735087e-04	ci right 1.041642e-03	k: 3384	n:3360000
DKK2   3360000 perm   4867 sec   (690 perm/sec)   p_kst 1.007143e-03   p_cons 1.116393e-01   p_joint 1.866071e-04

Joint ci ratio: 1.564104e-01	ci left: 1.717746e-04	ci right 2.012023e-04	k: 627	n:3370000
Cons ci ratio: 6.023538e-03	ci left: 1.113055e-01	ci right 1.119783e-01	k: 376232	n:3370000
KS ci ratio: 6.729265e-02	ci left: 9.720787e-04	ci right 1.040059e-03	k: 3389	n:3370000
DKK2   3370000 perm   4894 sec   (689 perm/sec)   p_kst 1.005638e-03   p_cons 1.116415e-01   p_joint 1.860534e-04

Joint ci ratio: 1.562861e-01	ci left: 1.715507e-04	ci right 2.009144e-04	k: 628	n:3380000
Cons ci ratio: 6.014391e-03	ci left: 1.113136e-01	ci right 1.119853e-01	k: 377374	n:3380000
KS ci ratio: 6.722331e-02	ci left: 9.712388e-04	ci right 1.039088e-03	k: 3396	n:3380000
DKK2   3380000 perm   4921 sec   (687 perm/sec)   p_kst 1.004734e-03   p_cons 1.116491e-01   p_joint 1.857988e-04

Joint ci ratio: 1.562861e-01	ci left: 1.710447e-04	ci right 2.003217e-04	k: 628	n:3390000
Cons ci ratio: 6.005723e-03	ci left: 1.113071e-01	ci right 1.119779e-01	k: 378467	n:3390000
KS ci ratio: 6.711472e-02	ci left: 9.715642e-04	ci right 1.039322e-03	k: 3407	n:3390000
DKK2   3390000 perm   4949 sec   (685 perm/sec)   p_kst 1.005015e-03   p_cons 1.116422e-01   p_joint 1.852507e-04

Joint ci ratio: 1.560382e-01	ci left: 1.711068e-04	ci right 2.003438e-04	k: 630	n:3400000
Cons ci ratio: 5.996889e-03	ci left: 1.113075e-01	ci right 1.119773e-01	k: 379583	n:3400000
KS ci ratio: 6.695767e-02	ci left: 9.733337e-04	ci right 1.041050e-03	k: 3423	n:3400000
DKK2   3400000 perm   4976 sec   (683 perm/sec)   p_kst 1.006765e-03   p_cons 1.116421e-01   p_joint 1.852941e-04

Joint ci ratio: 1.559148e-01	ci left: 1.708869e-04	ci right 2.000609e-04	k: 631	n:3410000
Cons ci ratio: 5.988137e-03	ci left: 1.113064e-01	ci right 1.119752e-01	k: 380694	n:3410000
KS ci ratio: 6.691865e-02	ci left: 9.716327e-04	ci right 1.039190e-03	k: 3427	n:3410000
DKK2   3410000 perm   5004 sec   (682 perm/sec)   p_kst 1.004985e-03   p_cons 1.116405e-01   p_joint 1.850440e-04

Joint ci ratio: 1.556686e-01	ci left: 1.709492e-04	ci right 2.000835e-04	k: 633	n:3420000
Cons ci ratio: 5.979662e-03	ci left: 1.112974e-01	ci right 1.119652e-01	k: 381778	n:3420000
KS ci ratio: 6.677267e-02	ci left: 9.731043e-04	ci right 1.040611e-03	k: 3442	n:3420000
DKK2   3420000 perm   5032 sec   (680 perm/sec)   p_kst 1.006433e-03   p_cons 1.116310e-01   p_joint 1.850877e-04

Joint ci ratio: 1.555460e-01	ci left: 1.707310e-04	ci right 1.998031e-04	k: 634	n:3430000
Cons ci ratio: 5.971187e-03	ci left: 1.112897e-01	ci right 1.119565e-01	k: 382866	n:3430000
KS ci ratio: 6.665660e-02	ci left: 9.737075e-04	ci right 1.041134e-03	k: 3454	n:3430000
DKK2   3430000 perm   5059 sec   (678 perm/sec)   p_kst 1.006997e-03   p_cons 1.116227e-01   p_joint 1.848397e-04

Joint ci ratio: 1.549372e-01	ci left: 1.716317e-04	ci right 2.007322e-04	k: 639	n:3440000
Cons ci ratio: 5.962880e-03	ci left: 1.112776e-01	ci right 1.119434e-01	k: 383939	n:3440000
KS ci ratio: 6.646441e-02	ci left: 9.765942e-04	ci right 1.044018e-03	k: 3474	n:3440000
DKK2   3440000 perm   5086 sec   (676 perm/sec)   p_kst 1.009884e-03   p_cons 1.116102e-01   p_joint 1.857558e-04

Joint ci ratio: 1.546956e-01	ci left: 1.716915e-04	ci right 2.007525e-04	k: 641	n:3450000
Cons ci ratio: 5.953972e-03	ci left: 1.112867e-01	ci right 1.119516e-01	k: 385085	n:3450000
KS ci ratio: 6.634040e-02	ci left: 9.774690e-04	ci right 1.044822e-03	k: 3487	n:3450000
DKK2   3450000 perm   5114 sec   (675 perm/sec)   p_kst 1.010725e-03   p_cons 1.116188e-01   p_joint 1.857971e-04

Joint ci ratio: 1.545753e-01	ci left: 1.714731e-04	ci right 2.004725e-04	k: 642	n:3460000
Cons ci ratio: 5.945424e-03	ci left: 1.112851e-01	ci right 1.119490e-01	k: 386194	n:3460000
KS ci ratio: 6.626448e-02	ci left: 9.769178e-04	ci right 1.044153e-03	k: 3495	n:3460000
DKK2   3460000 perm   5142 sec   (673 perm/sec)   p_kst 1.010116e-03   p_cons 1.116168e-01   p_joint 1.855491e-04

Joint ci ratio: 1.544553e-01	ci left: 1.712560e-04	ci right 2.001941e-04	k: 643	n:3470000
Cons ci ratio: 5.936679e-03	ci left: 1.112913e-01	ci right 1.119543e-01	k: 387330	n:3470000
KS ci ratio: 6.616991e-02	ci left: 9.769366e-04	ci right 1.044073e-03	k: 3505	n:3470000
DKK2   3470000 perm   5170 sec   (671 perm/sec)   p_kst 1.010086e-03   p_cons 1.116225e-01   p_joint 1.853026e-04

Joint ci ratio: 1.538591e-01	ci left: 1.721452e-04	ci right 2.011109e-04	k: 648	n:3480000
Cons ci ratio: 5.927871e-03	ci left: 1.113009e-01	ci right 1.119629e-01	k: 388478	n:3480000
KS ci ratio: 6.603815e-02	ci left: 9.780858e-04	ci right 1.045163e-03	k: 3519	n:3480000
DKK2   3480000 perm   5198 sec   (669 perm/sec)   p_kst 1.011207e-03   p_cons 1.116316e-01   p_joint 1.862069e-04

Joint ci ratio: 1.537407e-01	ci left: 1.719275e-04	ci right 2.008323e-04	k: 649	n:3490000
Cons ci ratio: 5.919982e-03	ci left: 1.112810e-01	ci right 1.119420e-01	k: 389523	n:3490000
KS ci ratio: 6.596326e-02	ci left: 9.775377e-04	ci right 1.044498e-03	k: 3527	n:3490000
DKK2   3490000 perm   5226 sec   (668 perm/sec)   p_kst 1.010602e-03   p_cons 1.116112e-01   p_joint 1.859599e-04

Joint ci ratio: 1.535047e-01	ci left: 1.719857e-04	ci right 2.008518e-04	k: 651	n:3500000
Cons ci ratio: 5.911980e-03	ci left: 1.112660e-01	ci right 1.119260e-01	k: 390585	n:3500000
KS ci ratio: 6.587929e-02	ci left: 9.772738e-04	ci right 1.044128e-03	k: 3536	n:3500000
DKK2   3500000 perm   5255 sec   (666 perm/sec)   p_kst 1.010286e-03   p_cons 1.115957e-01   p_joint 1.860000e-04

Joint ci ratio: 1.533872e-01	ci left: 1.717697e-04	ci right 2.005754e-04	k: 652	n:3510000
Cons ci ratio: 5.903374e-03	ci left: 1.112725e-01	ci right 1.119316e-01	k: 391722	n:3510000
KS ci ratio: 6.585144e-02	ci left: 9.753301e-04	ci right 1.042022e-03	k: 3539	n:3510000
DKK2   3510000 perm   5283 sec   (664 perm/sec)   p_kst 1.008262e-03   p_cons 1.116017e-01   p_joint 1.857550e-04

Joint ci ratio: 1.532699e-01	ci left: 1.715549e-04	ci right 2.003006e-04	k: 653	n:3520000
Cons ci ratio: 5.895253e-03	ci left: 1.112639e-01	ci right 1.119220e-01	k: 392806	n:3520000
KS ci ratio: 6.580503e-02	ci left: 9.739563e-04	ci right 1.040505e-03	k: 3544	n:3520000
DKK2   3520000 perm   5312 sec   (663 perm/sec)   p_kst 1.006818e-03   p_cons 1.115926e-01   p_joint 1.855114e-04

Joint ci ratio: 1.300014e-01	ci left: 2.407649e-04	ci right 2.745114e-04	k: 908	n:3530000
Cons ci ratio: 6.270106e-03	ci left: 9.937492e-02	ci right 1.000002e-01	k: 351896	n:3530000
KS ci ratio: 6.568467e-02	ci left: 9.748194e-04	ci right 1.041301e-03	k: 3557	n:3530000
DKK2   3530000 perm   5340 sec   (661 perm/sec)   p_kst 1.007649e-03   p_cons 9.968725e-02   p_joint 2.572238e-04

Joint ci ratio: 1.296453e-01	ci left: 2.414513e-04	ci right 2.751942e-04	k: 913	n:3540000
Cons ci ratio: 6.261213e-03	ci left: 9.937624e-02	ci right 1.000007e-01	k: 352896	n:3540000
KS ci ratio: 6.559256e-02	ci left: 9.748442e-04	ci right 1.041231e-03	k: 3567	n:3540000
DKK2   3540000 perm   5368 sec   (659 perm/sec)   p_kst 1.007627e-03   p_cons 9.968814e-02   p_joint 2.579096e-04

Joint ci ratio: 1.295745e-01	ci left: 2.410437e-04	ci right 2.747098e-04	k: 914	n:3550000
Cons ci ratio: 6.252534e-03	ci left: 9.937250e-02	ci right 9.999604e-02	k: 353878	n:3550000
KS ci ratio: 6.549168e-02	ci left: 9.751460e-04	ci right 1.041447e-03	k: 3578	n:3550000
DKK2   3550000 perm   5397 sec   (658 perm/sec)   p_kst 1.007887e-03   p_cons 9.968394e-02   p_joint 2.574648e-04

Joint ci ratio: 1.294331e-01	ci left: 2.409102e-04	ci right 2.745182e-04	k: 916	n:3560000
Cons ci ratio: 6.243911e-03	ci left: 9.936821e-02	ci right 9.999087e-02	k: 354858	n:3560000
KS ci ratio: 6.538214e-02	ci left: 9.757225e-04	ci right 1.041947e-03	k: 3590	n:3560000
DKK2   3560000 perm   5426 sec   (656 perm/sec)   p_kst 1.008427e-03   p_cons 9.967921e-02   p_joint 2.573034e-04

Joint ci ratio: 1.292922e-01	ci left: 2.407775e-04	ci right 2.743275e-04	k: 918	n:3570000
Cons ci ratio: 6.235372e-03	ci left: 9.936255e-02	ci right 9.998432e-02	k: 355833	n:3570000
KS ci ratio: 6.531854e-02	ci left: 9.749181e-04	ci right 1.041022e-03	k: 3597	n:3570000
DKK2   3570000 perm   5455 sec   (654 perm/sec)   p_kst 1.007563e-03   p_cons 9.967311e-02   p_joint 2.571429e-04

Joint ci ratio: 1.290817e-01	ci left: 2.409158e-04	ci right 2.744263e-04	k: 921	n:3580000
Cons ci ratio: 6.226344e-03	ci left: 9.937198e-02	ci right 9.999291e-02	k: 356862	n:3580000
KS ci ratio: 6.520987e-02	ci left: 9.754921e-04	ci right 1.041520e-03	k: 3609	n:3580000
DKK2   3580000 perm   5484 sec   (653 perm/sec)   p_kst 1.008101e-03   p_cons 9.968212e-02   p_joint 2.572626e-04

Joint ci ratio: 1.326557e-01	ci left: 2.270424e-04	ci right 2.595665e-04	k: 872	n:3590000
Cons ci ratio: 6.217423e-03	ci left: 9.937942e-02	ci right 9.999950e-02	k: 357884	n:3590000
KS ci ratio: 6.511074e-02	ci left: 9.757890e-04	ci right 1.041733e-03	k: 3620	n:3590000
DKK2   3590000 perm   5513 sec   (651 perm/sec)   p_kst 1.008357e-03   p_cons 9.968914e-02   p_joint 2.428969e-04

Joint ci ratio: 1.378896e-01	ci left: 2.089668e-04	ci right 2.401797e-04	k: 807	n:3600000
Cons ci ratio: 6.208301e-03	ci left: 9.939375e-02	ci right 1.000130e-01	k: 358931	n:3600000
KS ci ratio: 6.500310e-02	ci left: 9.763576e-04	ci right 1.042227e-03	k: 3632	n:3600000
DKK2   3600000 perm   5542 sec   (650 perm/sec)   p_kst 1.008889e-03   p_cons 9.970306e-02   p_joint 2.241667e-04

Joint ci ratio: 1.376343e-01	ci left: 2.091904e-04	ci right 2.403740e-04	k: 810	n:3610000
Cons ci ratio: 6.199524e-03	ci left: 9.939915e-02	ci right 1.000176e-01	k: 359946	n:3610000
KS ci ratio: 6.490491e-02	ci left: 9.766506e-04	ci right 1.042437e-03	k: 3643	n:3610000
DKK2   3610000 perm   5570 sec   (648 perm/sec)   p_kst 1.009141e-03   p_cons 9.970803e-02   p_joint 2.243767e-04

Joint ci ratio: 1.371279e-01	ci left: 2.102130e-04	ci right 2.414243e-04	k: 816	n:3620000
Cons ci ratio: 6.191080e-03	ci left: 9.939597e-02	ci right 1.000135e-01	k: 360930	n:3620000
KS ci ratio: 6.475397e-02	ci left: 9.785727e-04	ci right 1.044329e-03	k: 3660	n:3620000
DKK2   3620000 perm   5599 sec   (647 perm/sec)   p_kst 1.011050e-03   p_cons 9.970442e-02   p_joint 2.254144e-04

Joint ci ratio: 1.370441e-01	ci left: 2.098999e-04	ci right 2.410442e-04	k: 817	n:3630000
Cons ci ratio: 6.182082e-03	ci left: 9.940986e-02	ci right 1.000266e-01	k: 361976	n:3630000
KS ci ratio: 6.467454e-02	ci left: 9.783162e-04	ci right 1.043972e-03	k: 3669	n:3630000
DKK2   3630000 perm   5628 sec   (645 perm/sec)   p_kst 1.010744e-03   p_cons 9.971791e-02   p_joint 2.250689e-04

Joint ci ratio: 1.368769e-01	ci left: 2.098539e-04	ci right 2.409502e-04	k: 819	n:3640000
Cons ci ratio: 6.173482e-03	ci left: 9.941325e-02	ci right 1.000291e-01	k: 362984	n:3640000
KS ci ratio: 6.459539e-02	ci left: 9.780610e-04	ci right 1.043616e-03	k: 3678	n:3640000
DKK2   3640000 perm   5657 sec   (643 perm/sec)   p_kst 1.010440e-03   p_cons 9.972088e-02   p_joint 2.250000e-04

Joint ci ratio: 1.091649e-01	ci left: 3.338692e-04	ci right 3.726840e-04	k: 1288	n:3650000
Cons ci ratio: 6.164881e-03	ci left: 9.941772e-02	ci right 1.000328e-01	k: 363996	n:3650000
KS ci ratio: 6.446406e-02	ci left: 9.794247e-04	ci right 1.044933e-03	k: 3693	n:3650000
DKK2   3650000 perm   5686 sec   (642 perm/sec)   p_kst 1.011781e-03   p_cons 9.972493e-02   p_joint 3.528767e-04

Joint ci ratio: 1.101524e-01	ci left: 3.268452e-04	ci right 3.652094e-04	k: 1265	n:3660000
Cons ci ratio: 6.156483e-03	ci left: 9.941725e-02	ci right 1.000315e-01	k: 364990	n:3660000
KS ci ratio: 6.438569e-02	ci left: 9.791681e-04	ci right 1.044576e-03	k: 3702	n:3660000
DKK2   3660000 perm   5716 sec   (640 perm/sec)   p_kst 1.011475e-03   p_cons 9.972404e-02   p_joint 3.456284e-04

Joint ci ratio: 1.119356e-01	ci left: 3.153580e-04	ci right 3.530127e-04	k: 1225	n:3670000
Cons ci ratio: 6.148400e-03	ci left: 9.940863e-02	ci right 1.000220e-01	k: 365954	n:3670000
KS ci ratio: 6.436838e-02	ci left: 9.770362e-04	ci right 1.042284e-03	k: 3704	n:3670000
DKK2   3670000 perm   5745 sec   (639 perm/sec)   p_kst 1.009264e-03   p_cons 9.971499e-02   p_joint 3.337875e-04

Joint ci ratio: 1.117989e-01	ci left: 3.152934e-04	ci right 3.528914e-04	k: 1228	n:3680000
Cons ci ratio: 6.139958e-03	ci left: 9.941145e-02	ci right 1.000240e-01	k: 366960	n:3680000
KS ci ratio: 6.422115e-02	ci left: 9.789266e-04	ci right 1.044145e-03	k: 3721	n:3680000
DKK2   3680000 perm   5774 sec   (637 perm/sec)   p_kst 1.011141e-03   p_cons 9.971739e-02   p_joint 3.336957e-04

Joint ci ratio: 1.116627e-01	ci left: 3.152293e-04	ci right 3.527708e-04	k: 1231	n:3690000
Cons ci ratio: 6.131746e-03	ci left: 9.940857e-02	ci right 1.000202e-01	k: 367945	n:3690000
KS ci ratio: 6.416949e-02	ci left: 9.778735e-04	ci right 1.042968e-03	k: 3727	n:3690000
DKK2   3690000 perm   5804 sec   (636 perm/sec)   p_kst 1.010027e-03   p_cons 9.971409e-02   p_joint 3.336043e-04

Joint ci ratio: 1.140974e-01	ci left: 3.007199e-04	ci right 3.373669e-04	k: 1179	n:3700000
Cons ci ratio: 6.123640e-03	ci left: 9.940354e-02	ci right 1.000144e-01	k: 368922	n:3700000
KS ci ratio: 6.403217e-02	ci left: 9.794857e-04	ci right 1.044543e-03	k: 3743	n:3700000
DKK2   3700000 perm   5834 sec   (634 perm/sec)   p_kst 1.011622e-03   p_cons 9.970865e-02   p_joint 3.186486e-04

Joint ci ratio: 1.140008e-01	ci left: 3.004330e-04	ci right 3.370120e-04	k: 1181	n:3710000
Cons ci ratio: 6.115290e-03	ci left: 9.940662e-02	ci right 1.000166e-01	k: 369929	n:3710000
KS ci ratio: 6.394683e-02	ci left: 9.794978e-04	ci right 1.044466e-03	k: 3753	n:3710000
DKK2   3710000 perm   5863 sec   (633 perm/sec)   p_kst 1.011590e-03   p_cons 9.971132e-02   p_joint 3.183288e-04

Joint ci ratio: 9.916406e-02	ci left: 3.990670e-04	ci right 4.409643e-04	k: 1561	n:3720000
Cons ci ratio: 6.107057e-03	ci left: 9.940727e-02	ci right 1.000165e-01	k: 370927	n:3720000
KS ci ratio: 6.381942e-02	ci left: 9.808327e-04	ci right 1.045755e-03	k: 3768	n:3720000
DKK2   3720000 perm   5893 sec   (631 perm/sec)   p_kst 1.012903e-03   p_cons 9.971156e-02   p_joint 4.196237e-04

Outputting figure to mutsig2_images.part000000000050/DKK2.6_796_3720000_0.0010129_0.099712_0.00041962.png
                gene_name: DKK2
               theta_stop: 0.099 
                    nperm: 3720000 
                     p_ks: 0.0010 
        ci_ks_bounds_left: 0.00098 
       ci_ks_bounds_right: 0.0010 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.00042 
     ci_joint_bounds_left: 0.00040 
    ci_joint_bounds_right: 0.00044 

Current progress: 38 percent done.
DHX35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.115161e-02	ci left: 3.604268e-01	ci right 3.794491e-01	k: 3699	n:10000
Cons ci ratio: 7.691072e-02	ci left: 1.982083e-01	ci right 2.141632e-01	k: 2061	n:10000
KS ci ratio: 4.792091e-02	ci left: 3.911750e-01	ci right 4.104828e-01	k: 4008	n:10000
DHX35   10000 perm   2 sec   (5490 perm/sec)   p_kst 4.008000e-01   p_cons 2.061000e-01   p_joint 3.699000e-01

Outputting figure to mutsig2_images.part000000000050/DHX35.5_2200_10000_0.4008_0.2061_0.3699.png
                gene_name: DHX35
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 40 percent done.
DHX36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.795547e-02	ci left: 8.190349e-01	ci right 8.339744e-01	k: 8266	n:10000
Cons ci ratio: 5.781514e-03	ci left: 9.757832e-01	ci right 9.815332e-01	k: 9788	n:10000
KS ci ratio: 2.911732e-02	ci left: 6.349268e-01	ci right 6.537891e-01	k: 6444	n:10000
DHX36   10000 perm   2 sec   (5001 perm/sec)   p_kst 6.444000e-01   p_cons 9.788000e-01   p_joint 8.266000e-01

Outputting figure to mutsig2_images.part000000000050/DHX36.5_3127_10000_0.6444_0.9788_0.8266.png
                gene_name: DHX36
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 42 percent done.
DHX37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.619733e-02	ci left: 8.471301e-01	ci right 8.610629e-01	k: 8542	n:10000
Cons ci ratio: 4.743559e-02	ci left: 3.960547e-01	ci right 4.154003e-01	k: 4057	n:10000
KS ci ratio: 3.871893e-02	ci left: 4.962503e-01	ci right 5.159461e-01	k: 5061	n:10000
DHX37   10000 perm   2 sec   (5061 perm/sec)   p_kst 5.061000e-01   p_cons 4.057000e-01   p_joint 8.542000e-01

Outputting figure to mutsig2_images.part000000000050/DHX37.5_3582_10000_0.5061_0.4057_0.8542.png
                gene_name: DHX37
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 43 percent done.
DHX9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.152016e-02	ci left: 4.613760e-01	ci right 4.810407e-01	k: 4712	n:10000
Cons ci ratio: 3.237781e-02	ci left: 5.847001e-01	ci right 6.040449e-01	k: 5944	n:10000
KS ci ratio: 7.138054e-02	ci left: 2.233609e-01	ci right 2.399957e-01	k: 2316	n:10000
DHX9   10000 perm   2 sec   (4857 perm/sec)   p_kst 2.316000e-01   p_cons 5.944000e-01   p_joint 4.712000e-01

Outputting figure to mutsig2_images.part000000000050/DHX9.5_3921_10000_0.2316_0.5944_0.4712.png
                gene_name: DHX9
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 45 percent done.
DIAPH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.420320e-02	ci left: 8.775616e-01	ci right 8.902138e-01	k: 8840	n:10000
Cons ci ratio: 3.177040e-02	ci left: 5.938334e-01	ci right 6.131063e-01	k: 6035	n:10000
KS ci ratio: 1.643706e-02	ci left: 8.433592e-01	ci right 8.574360e-01	k: 8505	n:10000
DIAPH3   10000 perm   2 sec   (4977 perm/sec)   p_kst 8.505000e-01   p_cons 6.035000e-01   p_joint 8.840000e-01

Outputting figure to mutsig2_images.part000000000050/DIAPH3.5_3714_10000_0.8505_0.6035_0.884.png
                gene_name: DIAPH3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 47 percent done.
DIRAS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.826768e-02	ci left: 8.139530e-01	ci right 8.290592e-01	k: 8216	n:10000
KS ci ratio: 2.121859e-02	ci left: 7.650660e-01	ci right 7.815745e-01	k: 7734	n:10000
DIRAS2   10000 perm   2 sec   (6321 perm/sec)   p_kst 7.734000e-01   p_cons 8.216000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DIRAS2.5_604_10000_0.7734_0.8216_1.png
                gene_name: DIRAS2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
DIS3L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.583828e-02	ci left: 6.879873e-01	ci right 7.060978e-01	k: 6971	n:10000
Cons ci ratio: 5.055356e-02	ci left: 3.658968e-01	ci right 3.849758e-01	k: 3754	n:10000
KS ci ratio: 3.622611e-02	ci left: 5.294702e-01	ci right 5.491069e-01	k: 5393	n:10000
DIS3L2   10000 perm   2 sec   (5755 perm/sec)   p_kst 5.393000e-01   p_cons 3.754000e-01   p_joint 6.971000e-01

Outputting figure to mutsig2_images.part000000000050/DIS3L2.5_2738_10000_0.5393_0.3754_0.6971.png
                gene_name: DIS3L2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 50 percent done.
DKK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.773191e-02	ci left: 3.930670e-01	ci right 4.123897e-01	k: 4027	n:10000
Cons ci ratio: 8.222034e-02	ci left: 1.775304e-01	ci right 1.928534e-01	k: 1851	n:10000
KS ci ratio: 3.371796e-02	ci left: 5.649396e-01	ci right 5.844169e-01	k: 5747	n:10000
DKK1   10000 perm   2 sec   (6165 perm/sec)   p_kst 5.747000e-01   p_cons 1.851000e-01   p_joint 4.027000e-01

Outputting figure to mutsig2_images.part000000000050/DKK1.5_817_10000_0.5747_0.1851_0.4027.png
                gene_name: DKK1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 52 percent done.
DLG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.097438e-02	ci left: 4.679675e-01	ci right 4.876454e-01	k: 4778	n:10000
Cons ci ratio: 4.699584e-02	ci left: 4.005369e-01	ci right 4.199155e-01	k: 4102	n:10000
KS ci ratio: 6.679098e-02	ci left: 2.475672e-01	ci right 2.647751e-01	k: 2561	n:10000
DLG5   10000 perm   2 sec   (4489 perm/sec)   p_kst 2.561000e-01   p_cons 4.102000e-01   p_joint 4.778000e-01

Outputting figure to mutsig2_images.part000000000050/DLG5.5_5888_10000_0.2561_0.4102_0.4778.png
                gene_name: DLG5
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 53 percent done.
DLGAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.370219e-02	ci left: 2.123080e-01	ci right 2.286552e-01	k: 2204	n:10000
Cons ci ratio: 7.992458e-02	ci left: 1.860928e-01	ci right 2.016859e-01	k: 1938	n:10000
KS ci ratio: 8.304689e-02	ci left: 1.745794e-01	ci right 1.898062e-01	k: 1821	n:10000
DLGAP2   10000 perm   2 sec   (5870 perm/sec)   p_kst 1.821000e-01   p_cons 1.938000e-01   p_joint 2.204000e-01

Outputting figure to mutsig2_images.part000000000050/DLGAP2.5_2972_10000_0.1821_0.1938_0.2204.png
                gene_name: DLGAP2
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 55 percent done.
DHODH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.082280e-02	ci left: 6.082933e-01	ci right 6.274380e-01	k: 6179	n:10000
Cons ci ratio: 3.156504e-02	ci left: 5.969456e-01	ci right 6.161923e-01	k: 6066	n:10000
KS ci ratio: 5.131657e-02	ci left: 3.589352e-01	ci right 3.779415e-01	k: 3684	n:10000
DHODH   10000 perm   2 sec   (5974 perm/sec)   p_kst 3.684000e-01   p_cons 6.066000e-01   p_joint 6.179000e-01

Outputting figure to mutsig2_images.part000000000050/DHODH.4_1224_10000_0.3684_0.6066_0.6179.png
                gene_name: DHODH
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 57 percent done.
DHX32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.416833e-02	ci left: 5.584231e-01	ci right 5.779372e-01	k: 5682	n:10000
Cons ci ratio: 1.455385e-02	ci left: 8.723452e-01	ci right 8.852332e-01	k: 8789	n:10000
KS ci ratio: 6.881274e-02	ci left: 2.364969e-01	ci right 2.534520e-01	k: 2449	n:10000
DHX32   10000 perm   2 sec   (5479 perm/sec)   p_kst 2.449000e-01   p_cons 8.789000e-01   p_joint 5.682000e-01

Outputting figure to mutsig2_images.part000000000050/DHX32.4_2276_10000_0.2449_0.8789_0.5682.png
                gene_name: DHX32
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 58 percent done.
DHX40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.207044e-01	ci left: 8.961344e-02	ci right 1.012235e-01	k: 953	n:10000
Cons ci ratio: 8.948304e-02	ci left: 1.537479e-01	ci right 1.682502e-01	k: 1609	n:10000
KS ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
DHX40   10000 perm   2 sec   (5749 perm/sec)   p_kst 4.060000e-02   p_cons 1.609000e-01   p_joint 9.530000e-02

Joint ci ratio: 1.199386e-01	ci left: 4.765147e-02	ci right 5.377999e-02	k: 1013	n:20000
Cons ci ratio: 6.281066e-02	ci left: 1.578558e-01	ci right 1.681423e-01	k: 3259	n:20000
KS ci ratio: 1.393670e-01	ci left: 3.539255e-02	ci right 4.074282e-02	k: 760	n:20000
DHX40   20000 perm   4 sec   (5137 perm/sec)   p_kst 3.800000e-02   p_cons 1.629500e-01   p_joint 5.065000e-02

Joint ci ratio: 8.137254e-02	ci left: 6.887093e-02	ci right 7.474565e-02	k: 2153	n:30000
Cons ci ratio: 5.137284e-02	ci left: 1.583416e-01	ci right 1.667238e-01	k: 4875	n:30000
KS ci ratio: 1.136642e-01	ci left: 3.596188e-02	ci right 4.032815e-02	k: 1143	n:30000
DHX40   30000 perm   6 sec   (4901 perm/sec)   p_kst 3.810000e-02   p_cons 1.625000e-01   p_joint 7.176667e-02

Joint ci ratio: 7.918778e-02	ci left: 5.543460e-02	ci right 6.002987e-02	k: 2308	n:40000
Cons ci ratio: 4.453666e-02	ci left: 1.586243e-01	ci right 1.658748e-01	k: 6489	n:40000
KS ci ratio: 9.838063e-02	ci left: 3.629386e-02	ci right 4.007357e-02	k: 1526	n:40000
DHX40   40000 perm   8 sec   (4750 perm/sec)   p_kst 3.815000e-02   p_cons 1.622250e-01   p_joint 5.770000e-02

Outputting figure to mutsig2_images.part000000000050/DHX40.4_2412_40000_0.03815_0.16223_0.0577.png
                gene_name: DHX40
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.060 

Current progress: 60 percent done.
DLEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.764588e-02	ci left: 6.584707e-01	ci right 6.770315e-01	k: 6678	n:10000
Cons ci ratio: 3.976252e-02	ci left: 4.829545e-01	ci right 5.026497e-01	k: 4928	n:10000
KS ci ratio: 3.725154e-02	ci left: 5.155566e-01	ci right 5.352286e-01	k: 5254	n:10000
DLEC1   10000 perm   2 sec   (4547 perm/sec)   p_kst 5.254000e-01   p_cons 4.928000e-01   p_joint 6.678000e-01

Outputting figure to mutsig2_images.part000000000050/DLEC1.4_5609_10000_0.5254_0.4928_0.6678.png
                gene_name: DLEC1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 62 percent done.
DLGAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.808135e-02	ci left: 5.045512e-01	ci right 5.242404e-01	k: 5144	n:10000
Cons ci ratio: 2.581381e-02	ci left: 6.883905e-01	ci right 7.064943e-01	k: 6975	n:10000
KS ci ratio: 7.225356e-02	ci left: 2.191164e-01	ci right 2.356427e-01	k: 2273	n:10000
DLGAP3   10000 perm   2 sec   (5508 perm/sec)   p_kst 2.273000e-01   p_cons 6.975000e-01   p_joint 5.144000e-01

Outputting figure to mutsig2_images.part000000000050/DLGAP3.4_2980_10000_0.2273_0.6975_0.5144.png
                gene_name: DLGAP3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 63 percent done.
DLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.709916e-02	ci left: 1.974200e-01	ci right 2.133520e-01	k: 2053	n:10000
Cons ci ratio: 1.031447e-01	ci left: 1.196532e-01	ci right 1.327654e-01	k: 1261	n:10000
KS ci ratio: 7.859457e-02	ci left: 1.913119e-01	ci right 2.070637e-01	k: 1991	n:10000
DLL1   10000 perm   2 sec   (5845 perm/sec)   p_kst 1.991000e-01   p_cons 1.261000e-01   p_joint 2.053000e-01

Joint ci ratio: 4.531850e-02	ci left: 2.660399e-01	ci right 2.784264e-01	k: 5444	n:20000
Cons ci ratio: 7.257410e-02	ci left: 1.226609e-01	ci right 1.319478e-01	k: 2545	n:20000
KS ci ratio: 5.532413e-02	ci left: 1.950690e-01	ci right 2.062182e-01	k: 4012	n:20000
DLL1   20000 perm   4 sec   (5146 perm/sec)   p_kst 2.006000e-01   p_cons 1.272500e-01   p_joint 2.722000e-01

Outputting figure to mutsig2_images.part000000000050/DLL1.4_2216_20000_0.2006_0.12725_0.2722.png
                gene_name: DLL1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 65 percent done.
DHRS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.221075e-02	ci left: 2.752748e-01	ci right 2.930511e-01	k: 2841	n:10000
Cons ci ratio: 1.573964e-02	ci left: 8.542685e-01	ci right 8.679204e-01	k: 8612	n:10000
KS ci ratio: 1.210554e-01	ci left: 8.912712e-02	ci right 1.007101e-01	k: 948	n:10000
DHRS2   10000 perm   2 sec   (6549 perm/sec)   p_kst 9.480000e-02   p_cons 8.612000e-01   p_joint 2.841000e-01

Joint ci ratio: 4.927785e-02	ci left: 2.343916e-01	ci right 2.462840e-01	k: 4806	n:20000
Cons ci ratio: 1.078429e-02	ci left: 8.637885e-01	ci right 8.732040e-01	k: 17371	n:20000
KS ci ratio: 8.457082e-02	ci left: 9.288305e-02	ci right 1.011345e-01	k: 1939	n:20000
DHRS2   20000 perm   3 sec   (5780 perm/sec)   p_kst 9.695000e-02   p_cons 8.685500e-01   p_joint 2.403000e-01

Outputting figure to mutsig2_images.part000000000050/DHRS2.3_935_20000_0.09695_0.86855_0.2403.png
                gene_name: DHRS2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 67 percent done.
DHX15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.210859e-02	ci left: 3.518763e-01	ci right 3.708045e-01	k: 3613	n:10000
Cons ci ratio: 2.090974e-02	ci left: 7.702306e-01	ci right 7.866069e-01	k: 7785	n:10000
KS ci ratio: 6.494961e-02	ci left: 2.582492e-01	ci right 2.756868e-01	k: 2669	n:10000
DHX15   10000 perm   2 sec   (5087 perm/sec)   p_kst 2.669000e-01   p_cons 7.785000e-01   p_joint 3.613000e-01

Outputting figure to mutsig2_images.part000000000050/DHX15.3_2444_10000_0.2669_0.7785_0.3613.png
                gene_name: DHX15
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 68 percent done.
DHX58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.226322e-01	ci left: 8.698787e-02	ci right 9.845066e-02	k: 926	n:10000
Cons ci ratio: 1.262686e-01	ci left: 8.232386e-02	ci right 9.351756e-02	k: 878	n:10000
KS ci ratio: 1.321220e-01	ci left: 7.553121e-02	ci right 8.631442e-02	k: 808	n:10000
DHX58   10000 perm   2 sec   (5805 perm/sec)   p_kst 8.080000e-02   p_cons 8.780000e-02   p_joint 9.260000e-02

Joint ci ratio: 1.169324e-01	ci left: 5.008111e-02	ci right 5.634959e-02	k: 1063	n:20000
Cons ci ratio: 9.168046e-02	ci left: 7.989763e-02	ci right 8.762389e-02	k: 1674	n:20000
KS ci ratio: 9.219200e-02	ci left: 7.906552e-02	ci right 8.675625e-02	k: 1657	n:20000
DHX58   20000 perm   4 sec   (5186 perm/sec)   p_kst 8.285000e-02   p_cons 8.370000e-02   p_joint 5.315000e-02

Joint ci ratio: 9.024786e-02	ci left: 5.649034e-02	ci right 6.186209e-02	k: 1774	n:30000
Cons ci ratio: 7.497950e-02	ci left: 8.036063e-02	ci right 8.665364e-02	k: 2504	n:30000
KS ci ratio: 7.514327e-02	ci left: 8.003302e-02	ci right 8.631465e-02	k: 2494	n:30000
DHX58   30000 perm   6 sec   (4942 perm/sec)   p_kst 8.313333e-02   p_cons 8.346667e-02   p_joint 5.913333e-02

Outputting figure to mutsig2_images.part000000000050/DHX58.3_2085_30000_0.083133_0.083467_0.059133.png
                gene_name: DHX58
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.062 

Current progress: 70 percent done.
DIO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.750894e-02	ci left: 6.606855e-01	ci right 6.792154e-01	k: 6700	n:10000
Cons ci ratio: 4.393885e-02	ci left: 4.333316e-01	ci right 4.529016e-01	k: 4431	n:10000
KS ci ratio: 1.264552e-02	ci left: 8.999060e-01	ci right 9.114564e-01	k: 9058	n:10000
DIO3   10000 perm   2 sec   (6423 perm/sec)   p_kst 9.058000e-01   p_cons 4.431000e-01   p_joint 6.700000e-01

Outputting figure to mutsig2_images.part000000000050/DIO3.3_919_10000_0.9058_0.4431_0.67.png
                gene_name: DIO3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 72 percent done.
DLAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.391724e-02	ci left: 2.113215e-01	ci right 2.276422e-01	k: 2194	n:10000
Cons ci ratio: 1.168182e-01	ci left: 9.525826e-02	ci right 1.071752e-01	k: 1011	n:10000
KS ci ratio: 4.753408e-02	ci left: 3.950588e-01	ci right 4.143968e-01	k: 4047	n:10000
DLAT   10000 perm   2 sec   (6035 perm/sec)   p_kst 4.047000e-01   p_cons 1.011000e-01   p_joint 2.194000e-01

Joint ci ratio: 5.390757e-02	ci left: 2.034321e-01	ci right 2.147526e-01	k: 4181	n:20000
Cons ci ratio: 8.173122e-02	ci left: 9.891852e-02	ci right 1.073972e-01	k: 2062	n:20000
KS ci ratio: 3.377232e-02	ci left: 3.956432e-01	ci right 4.092851e-01	k: 8049	n:20000
DLAT   20000 perm   4 sec   (5347 perm/sec)   p_kst 4.024500e-01   p_cons 1.031000e-01   p_joint 2.090500e-01

Outputting figure to mutsig2_images.part000000000050/DLAT.3_2000_20000_0.40245_0.1031_0.20905.png
                gene_name: DLAT
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 73 percent done.
DLG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.276858e-03	ci left: 9.532564e-01	ci right 9.612745e-01	k: 9574	n:10000
Cons ci ratio: 3.885079e-02	ci left: 4.945505e-01	ci right 5.142470e-01	k: 5044	n:10000
KS ci ratio: 3.038716e-02	ci left: 6.150242e-01	ci right 6.341032e-01	k: 6246	n:10000
DLG1   10000 perm   2 sec   (5543 perm/sec)   p_kst 6.246000e-01   p_cons 5.044000e-01   p_joint 9.574000e-01

Outputting figure to mutsig2_images.part000000000050/DLG1.3_2919_10000_0.6246_0.5044_0.9574.png
                gene_name: DLG1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 75 percent done.
DLG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.642336e-02	ci left: 5.267670e-01	ci right 5.464117e-01	k: 5366	n:10000
KS ci ratio: 2.112175e-02	ci left: 7.666861e-01	ci right 7.831535e-01	k: 7750	n:10000
DLG4   10000 perm   2 sec   (6162 perm/sec)   p_kst 7.750000e-01   p_cons 5.366000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DLG4.3_2426_10000_0.775_0.5366_1.png
                gene_name: DLG4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
DLGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.872701e-02	ci left: 8.064357e-01	ci right 8.217809e-01	k: 8142	n:10000
Cons ci ratio: 5.163782e-02	ci left: 3.560517e-01	ci right 3.750267e-01	k: 3655	n:10000
KS ci ratio: 3.366282e-02	ci left: 5.657417e-01	ci right 5.852143e-01	k: 5755	n:10000
DLGAP1   10000 perm   2 sec   (5587 perm/sec)   p_kst 5.755000e-01   p_cons 3.655000e-01   p_joint 8.142000e-01

Outputting figure to mutsig2_images.part000000000050/DLGAP1.3_3029_10000_0.5755_0.3655_0.8142.png
                gene_name: DLGAP1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 78 percent done.
DLGAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.715849e-01	ci left: 4.533038e-02	ci right 5.393440e-02	k: 495	n:10000
Cons ci ratio: 2.228902e-01	ci left: 2.664945e-02	ci right 3.342800e-02	k: 299	n:10000
KS ci ratio: 6.424362e-02	ci left: 2.625040e-01	ci right 2.800294e-01	k: 2712	n:10000
DLGAP5   10000 perm   2 sec   (5542 perm/sec)   p_kst 2.712000e-01   p_cons 2.990000e-02   p_joint 4.950000e-02

Joint ci ratio: 1.297411e-01	ci left: 4.081147e-02	ci right 4.652216e-02	k: 872	n:20000
Cons ci ratio: 1.568044e-01	ci left: 2.791979e-02	ci right 3.271805e-02	k: 605	n:20000
KS ci ratio: 4.545613e-02	ci left: 2.648486e-01	ci right 2.772180e-01	k: 5420	n:20000
DLGAP5   20000 perm   4 sec   (4966 perm/sec)   p_kst 2.710000e-01   p_cons 3.025000e-02   p_joint 4.360000e-02

Joint ci ratio: 1.028705e-01	ci left: 4.378695e-02	ci right 4.856811e-02	k: 1384	n:30000
Cons ci ratio: 1.268135e-01	ci left: 2.890608e-02	ci right 3.285213e-02	k: 925	n:30000
KS ci ratio: 3.703207e-02	ci left: 2.668707e-01	ci right 2.769735e-01	k: 8157	n:30000
DLGAP5   30000 perm   6 sec   (4705 perm/sec)   p_kst 2.719000e-01   p_cons 3.083333e-02   p_joint 4.613333e-02

Joint ci ratio: 8.157704e-02	ci left: 5.234436e-02	ci right 5.682058e-02	k: 2182	n:40000
Cons ci ratio: 1.103168e-01	ci left: 2.890948e-02	ci right 3.230912e-02	k: 1223	n:40000
KS ci ratio: 3.211806e-02	ci left: 2.669718e-01	ci right 2.757114e-01	k: 10853	n:40000
DLGAP5   40000 perm   9 sec   (4599 perm/sec)   p_kst 2.713250e-01   p_cons 3.057500e-02   p_joint 5.455000e-02

Joint ci ratio: 8.083457e-02	ci left: 4.310132e-02	ci right 4.675175e-02	k: 2245	n:50000
Cons ci ratio: 9.982055e-02	ci left: 2.842452e-02	ci right 3.143038e-02	k: 1495	n:50000
KS ci ratio: 2.874254e-02	ci left: 2.672269e-01	ci right 2.750397e-01	k: 13556	n:50000
DLGAP5   50000 perm   11 sec   (4515 perm/sec)   p_kst 2.711200e-01   p_cons 2.990000e-02   p_joint 4.490000e-02

Outputting figure to mutsig2_images.part000000000050/DLGAP5.3_2708_50000_0.27112_0.0299_0.0449.png
                gene_name: DLGAP5
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 80 percent done.
DLK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.767252e-02	ci left: 3.067933e-01	ci right 3.251140e-01	k: 3159	n:10000
Cons ci ratio: 6.929979e-02	ci left: 2.339280e-01	ci right 2.508223e-01	k: 2423	n:10000
KS ci ratio: 6.230261e-02	ci left: 2.746806e-01	ci right 2.924457e-01	k: 2835	n:10000
DLK1   10000 perm   2 sec   (6322 perm/sec)   p_kst 2.835000e-01   p_cons 2.423000e-01   p_joint 3.159000e-01

Outputting figure to mutsig2_images.part000000000050/DLK1.3_1172_10000_0.2835_0.2423_0.3159.png
                gene_name: DLK1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 82 percent done.
DLL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.734323e-01	ci left: 4.437162e-02	ci right 5.289379e-02	k: 485	n:10000
Cons ci ratio: 2.228902e-01	ci left: 2.664945e-02	ci right 3.342800e-02	k: 299	n:10000
KS ci ratio: 5.609637e-02	ci left: 3.187994e-01	ci right 3.373008e-01	k: 3280	n:10000
DLL3   10000 perm   2 sec   (5969 perm/sec)   p_kst 3.280000e-01   p_cons 2.990000e-02   p_joint 4.850000e-02

Joint ci ratio: 1.064011e-01	ci left: 6.015897e-02	ci right 6.696859e-02	k: 1270	n:20000
Cons ci ratio: 1.640659e-01	ci left: 2.546943e-02	ci right 3.006924e-02	k: 554	n:20000
KS ci ratio: 3.843498e-02	ci left: 3.355234e-01	ci right 3.487225e-01	k: 6842	n:20000
DLL3   20000 perm   4 sec   (5237 perm/sec)   p_kst 3.421000e-01   p_cons 2.770000e-02   p_joint 6.350000e-02

Joint ci ratio: 5.525404e-02	ci left: 1.396826e-01	ci right 1.476532e-01	k: 4309	n:30000
Cons ci ratio: 1.326951e-01	ci left: 2.638812e-02	ci right 3.017064e-02	k: 847	n:30000
KS ci ratio: 3.197788e-02	ci left: 3.283638e-01	ci right 3.390684e-01	k: 10011	n:30000
DLL3   30000 perm   6 sec   (4972 perm/sec)   p_kst 3.337000e-01   p_cons 2.823333e-02   p_joint 1.436333e-01

Joint ci ratio: 4.952269e-02	ci left: 1.320610e-01	ci right 1.387920e-01	k: 5416	n:40000
Cons ci ratio: 1.131118e-01	ci left: 2.749885e-02	ci right 3.081998e-02	k: 1165	n:40000
KS ci ratio: 2.760103e-02	ci left: 3.305735e-01	ci right 3.398504e-01	k: 13408	n:40000
DLL3   40000 perm   8 sec   (4806 perm/sec)   p_kst 3.352000e-01   p_cons 2.912500e-02   p_joint 1.354000e-01

Joint ci ratio: 4.095995e-02	ci left: 1.516396e-01	ci right 1.580005e-01	k: 7740	n:50000
Cons ci ratio: 1.016927e-01	ci left: 2.739048e-02	ci right 3.034455e-02	k: 1442	n:50000
KS ci ratio: 2.480639e-02	ci left: 3.289287e-01	ci right 3.372107e-01	k: 16653	n:50000
DLL3   50000 perm   11 sec   (4630 perm/sec)   p_kst 3.330600e-01   p_cons 2.884000e-02   p_joint 1.548000e-01

Joint ci ratio: 3.886300e-02	ci left: 1.421585e-01	ci right 1.478092e-01	k: 8698	n:60000
Cons ci ratio: 8.997261e-02	ci left: 2.928520e-02	ci right 3.206044e-02	k: 1839	n:60000
KS ci ratio: 2.258638e-02	ci left: 3.304420e-01	ci right 3.380074e-01	k: 20053	n:60000
DLL3   60000 perm   13 sec   (4537 perm/sec)   p_kst 3.342167e-01   p_cons 3.065000e-02   p_joint 1.449667e-01

Outputting figure to mutsig2_images.part000000000050/DLL3.3_1899_60000_0.33422_0.03065_0.14497.png
                gene_name: DLL3
               theta_stop: 0.090 
                    nperm: 60000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 83 percent done.
DHCR24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.924285e-02	ci left: 3.782339e-01	ci right 3.974315e-01	k: 3878	n:10000
Cons ci ratio: 1.396686e-02	ci left: 8.810413e-01	ci right 8.935320e-01	k: 8874	n:10000
KS ci ratio: 8.679855e-02	ci left: 1.619969e-01	ci right 1.767962e-01	k: 1693	n:10000
DHCR24   10000 perm   2 sec   (6617 perm/sec)   p_kst 1.693000e-01   p_cons 8.874000e-01   p_joint 3.878000e-01

Outputting figure to mutsig2_images.part000000000050/DHCR24.2_1587_10000_0.1693_0.8874_0.3878.png
                gene_name: DHCR24
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 85 percent done.
DHCR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.921521e-02	ci left: 2.955875e-01	ci right 3.137265e-01	k: 3046	n:10000
Cons ci ratio: 9.854893e-02	ci left: 1.298276e-01	ci right 1.433848e-01	k: 1365	n:10000
KS ci ratio: 3.987402e-02	ci left: 4.815553e-01	ci right 5.012497e-01	k: 4914	n:10000
DHCR7   10000 perm   2 sec   (6567 perm/sec)   p_kst 4.914000e-01   p_cons 1.365000e-01   p_joint 3.046000e-01

Outputting figure to mutsig2_images.part000000000050/DHCR7.2_1456_10000_0.4914_0.1365_0.3046.png
                gene_name: DHCR7
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 87 percent done.
DHFRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.073389e-02	ci left: 7.731682e-01	ci right 7.894676e-01	k: 7814	n:10000
Cons ci ratio: 5.641595e-02	ci left: 3.163183e-01	ci right 3.347835e-01	k: 3255	n:10000
KS ci ratio: 1.146199e-02	ci left: 9.158488e-01	ci right 9.265043e-01	k: 9213	n:10000
DHFRL1   10000 perm   1 sec   (6727 perm/sec)   p_kst 9.213000e-01   p_cons 3.255000e-01   p_joint 7.814000e-01

Outputting figure to mutsig2_images.part000000000050/DHFRL1.2_568_10000_0.9213_0.3255_0.7814.png
                gene_name: DHFRL1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 88 percent done.
DHRS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.409237e-03	ci left: 9.852332e-01	ci right 9.896760e-01	k: 9876	n:10000
KS ci ratio: 2.024777e-02	ci left: 7.812748e-01	ci right 7.973563e-01	k: 7894	n:10000
DHRS3   10000 perm   1 sec   (7165 perm/sec)   p_kst 7.894000e-01   p_cons 9.876000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DHRS3.2_933_10000_0.7894_0.9876_1.png
                gene_name: DHRS3
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
DHRS7C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.670904e-03	ci left: 9.379643e-01	ci right 9.471758e-01	k: 9427	n:10000
KS ci ratio: 3.729637e-02	ci left: 5.149562e-01	ci right 5.346293e-01	k: 5248	n:10000
DHRS7C   10000 perm   2 sec   (6378 perm/sec)   p_kst 5.248000e-01   p_cons 9.427000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DHRS7C.2_960_10000_0.5248_0.9427_1.png
                gene_name: DHRS7C
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
DIXDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.859028e-02	ci left: 2.376826e-01	ci right 2.546655e-01	k: 2461	n:10000
Cons ci ratio: 1.730584e-01	ci left: 4.456333e-02	ci right 5.310195e-02	k: 487	n:10000
KS ci ratio: 3.173059e-02	ci left: 5.944357e-01	ci right 6.137036e-01	k: 6041	n:10000
DIXDC1   10000 perm   2 sec   (5409 perm/sec)   p_kst 6.041000e-01   p_cons 4.870000e-02   p_joint 2.461000e-01

Joint ci ratio: 9.258836e-02	ci left: 7.842928e-02	ci right 8.609269e-02	k: 1644	n:20000
Cons ci ratio: 1.344817e-01	ci left: 3.800349e-02	ci right 4.353104e-02	k: 814	n:20000
KS ci ratio: 2.244515e-02	ci left: 5.971322e-01	ci right 6.107376e-01	k: 12079	n:20000
DIXDC1   20000 perm   4 sec   (5127 perm/sec)   p_kst 6.039500e-01   p_cons 4.070000e-02   p_joint 8.220000e-02

Joint ci ratio: 6.774507e-02	ci left: 9.698853e-02	ci right 1.038224e-01	k: 3011	n:30000
Cons ci ratio: 1.085382e-01	ci left: 3.940081e-02	ci right 4.395516e-02	k: 1249	n:30000
KS ci ratio: 1.835801e-02	ci left: 5.975706e-01	ci right 6.086761e-01	k: 18094	n:30000
DIXDC1   30000 perm   6 sec   (4978 perm/sec)   p_kst 6.031333e-01   p_cons 4.163333e-02   p_joint 1.003667e-01

Joint ci ratio: 5.398152e-02	ci left: 1.133220e-01	ci right 1.196338e-01	k: 4658	n:40000
Cons ci ratio: 9.360719e-02	ci left: 4.003064e-02	ci right 4.398620e-02	k: 1679	n:40000
KS ci ratio: 1.580610e-02	ci left: 6.011163e-01	ci right 6.107184e-01	k: 24237	n:40000
DIXDC1   40000 perm   8 sec   (4855 perm/sec)   p_kst 6.059250e-01   p_cons 4.197500e-02   p_joint 1.164500e-01

Outputting figure to mutsig2_images.part000000000050/DIXDC1.2_2158_40000_0.60593_0.041975_0.11645.png
                gene_name: DIXDC1
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 93 percent done.
DKC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.804305e-02	ci left: 8.176118e-01	ci right 8.325984e-01	k: 8252	n:10000
KS ci ratio: 3.191661e-02	ci left: 5.916250e-01	ci right 6.109159e-01	k: 6013	n:10000
DKC1   10000 perm   2 sec   (6310 perm/sec)   p_kst 6.013000e-01   p_cons 8.252000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000050/DKC1.2_1605_10000_0.6013_0.8252_1.png
                gene_name: DKC1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
DKK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.723386e-02	ci left: 1.329609e-01	ci right 1.466496e-01	k: 1397	n:10000
Cons ci ratio: 2.919359e-02	ci left: 6.337201e-01	ci right 6.525965e-01	k: 6432	n:10000
KS ci ratio: 2.589536e-01	ci left: 1.949575e-02	ci right 2.538701e-02	k: 223	n:10000
DKK3   10000 perm   1 sec   (6931 perm/sec)   p_kst 2.230000e-02   p_cons 6.432000e-01   p_joint 1.397000e-01

Joint ci ratio: 6.381919e-02	ci left: 1.536115e-01	ci right 1.637879e-01	k: 3173	n:20000
Cons ci ratio: 2.044417e-02	ci left: 6.409834e-01	ci right 6.542736e-01	k: 12953	n:20000
KS ci ratio: 1.869915e-01	ci left: 1.948692e-02	ci right 2.355385e-02	k: 429	n:20000
DKK3   20000 perm   3 sec   (5725 perm/sec)   p_kst 2.145000e-02   p_cons 6.476500e-01   p_joint 1.586500e-01

Joint ci ratio: 5.411539e-02	ci left: 1.448232e-01	ci right 1.529116e-01	k: 4465	n:30000
Cons ci ratio: 1.679231e-02	ci left: 6.394878e-01	ci right 6.503508e-01	k: 19348	n:30000
KS ci ratio: 1.570918e-01	ci left: 1.873410e-02	ci right 2.195973e-02	k: 609	n:30000
DKK3   30000 perm   5 sec   (5548 perm/sec)   p_kst 2.030000e-02   p_cons 6.449333e-01   p_joint 1.488333e-01

Joint ci ratio: 4.676245e-02	ci left: 1.459196e-01	ci right 1.529314e-01	k: 5976	n:40000
Cons ci ratio: 1.454929e-02	ci left: 6.400120e-01	ci right 6.494170e-01	k: 25789	n:40000
KS ci ratio: 1.359891e-01	ci left: 1.896456e-02	ci right 2.175569e-02	k: 813	n:40000
DKK3   40000 perm   7 sec   (5416 perm/sec)   p_kst 2.032500e-02   p_cons 6.447250e-01   p_joint 1.494000e-01

Joint ci ratio: 4.700262e-02	ci left: 1.192423e-01	ci right 1.250017e-01	k: 6105	n:50000
Cons ci ratio: 1.302143e-02	ci left: 6.402259e-01	ci right 6.486373e-01	k: 32222	n:50000
KS ci ratio: 1.212379e-01	ci left: 1.923703e-02	ci right 2.173908e-02	k: 1023	n:50000
DKK3   50000 perm   9 sec   (5296 perm/sec)   p_kst 2.046000e-02   p_cons 6.444400e-01   p_joint 1.221000e-01

Joint ci ratio: 3.718349e-02	ci left: 1.533696e-01	ci right 1.591970e-01	k: 9376	n:60000
Cons ci ratio: 1.187370e-02	ci left: 6.411058e-01	ci right 6.487802e-01	k: 38697	n:60000
KS ci ratio: 1.111280e-01	ci left: 1.918650e-02	ci right 2.146023e-02	k: 1218	n:60000
DKK3   60000 perm   12 sec   (5188 perm/sec)   p_kst 2.030000e-02   p_cons 6.449500e-01   p_joint 1.562667e-01

Joint ci ratio: 3.441189e-02	ci left: 1.536879e-01	ci right 1.590834e-01	k: 10946	n:70000
Cons ci ratio: 1.098830e-02	ci left: 6.415853e-01	ci right 6.486884e-01	k: 45160	n:70000
KS ci ratio: 1.024505e-01	ci left: 1.943518e-02	ci right 2.154768e-02	k: 1433	n:70000
DKK3   70000 perm   14 sec   (5083 perm/sec)   p_kst 2.047143e-02   p_cons 6.451429e-01   p_joint 1.563714e-01

Joint ci ratio: 3.213135e-02	ci left: 1.543362e-01	ci right 1.593887e-01	k: 12548	n:80000
Cons ci ratio: 1.029110e-02	ci left: 6.412593e-01	ci right 6.479052e-01	k: 51567	n:80000
KS ci ratio: 9.526723e-02	ci left: 1.973676e-02	ci right 2.172321e-02	k: 1657	n:80000
DKK3   80000 perm   16 sec   (4984 perm/sec)   p_kst 2.071250e-02   p_cons 6.445875e-01   p_joint 1.568500e-01

Outputting figure to mutsig2_images.part000000000050/DKK3.2_1081_80000_0.020712_0.64459_0.15685.png
                gene_name: DKK3
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 97 percent done.
DLGAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.232741e-01	ci left: 2.655489e-02	ci right 3.332262e-02	k: 298	n:10000
Cons ci ratio: 2.998689e-01	ci left: 1.427992e-02	ci right 1.940710e-02	k: 167	n:10000
KS ci ratio: 1.171404e-01	ci left: 9.477139e-02	ci right 1.066624e-01	k: 1006	n:10000
DLGAP4   10000 perm   2 sec   (5679 perm/sec)   p_kst 1.006000e-01   p_cons 1.670000e-02   p_joint 2.980000e-02

Joint ci ratio: 1.403283e-01	ci left: 3.490943e-02	ci right 4.022610e-02	k: 750	n:20000
Cons ci ratio: 2.146584e-01	ci left: 1.463801e-02	ci right 1.820458e-02	k: 327	n:20000
KS ci ratio: 8.376039e-02	ci left: 9.455091e-02	ci right 1.028662e-01	k: 1973	n:20000
DLGAP4   20000 perm   4 sec   (5095 perm/sec)   p_kst 9.865000e-02   p_cons 1.635000e-02   p_joint 3.750000e-02

Joint ci ratio: 6.947606e-02	ci left: 9.259058e-02	ci right 9.928791e-02	k: 2877	n:30000
Cons ci ratio: 1.769217e-01	ci left: 1.467425e-02	ci right 1.755390e-02	k: 482	n:30000
KS ci ratio: 6.857052e-02	ci left: 9.485493e-02	ci right 1.016231e-01	k: 2946	n:30000
DLGAP4   30000 perm   6 sec   (4865 perm/sec)   p_kst 9.820000e-02   p_cons 1.606667e-02   p_joint 9.590000e-02

Joint ci ratio: 5.564423e-02	ci left: 1.072953e-01	ci right 1.134614e-01	k: 4414	n:40000
Cons ci ratio: 1.572378e-01	ci left: 1.409589e-02	ci right 1.652521e-02	k: 611	n:40000
KS ci ratio: 5.902925e-02	ci left: 9.636121e-02	ci right 1.022471e-01	k: 3971	n:40000
DLGAP4   40000 perm   8 sec   (4730 perm/sec)   p_kst 9.927500e-02   p_cons 1.527500e-02   p_joint 1.103500e-01

Joint ci ratio: 1.016564e-01	ci left: 2.740999e-02	ci right 3.036504e-02	k: 1443	n:50000
Cons ci ratio: 1.436225e-01	ci left: 1.362478e-02	ci right 1.575211e-02	k: 733	n:50000
KS ci ratio: 5.263286e-02	ci left: 9.722559e-02	ci right 1.025010e-01	k: 4992	n:50000
DLGAP4   50000 perm   11 sec   (4631 perm/sec)   p_kst 9.984000e-02   p_cons 1.466000e-02   p_joint 2.886000e-02

Joint ci ratio: 1.011924e-01	ci left: 2.316392e-02	ci right 2.564904e-02	k: 1463	n:60000
Cons ci ratio: 1.307929e-01	ci left: 1.378448e-02	ci right 1.572954e-02	k: 884	n:60000
KS ci ratio: 4.798304e-02	ci left: 9.769304e-02	ci right 1.025124e-01	k: 6005	n:60000
DLGAP4   60000 perm   13 sec   (4548 perm/sec)   p_kst 1.000833e-01   p_cons 1.473333e-02   p_joint 2.438333e-02

Joint ci ratio: 1.131977e-01	ci left: 1.588862e-02	ci right 1.780888e-02	k: 1178	n:70000
Cons ci ratio: 1.192008e-01	ci left: 1.430665e-02	ci right 1.613386e-02	k: 1064	n:70000
KS ci ratio: 4.449783e-02	ci left: 9.757492e-02	ci right 1.020297e-01	k: 6985	n:70000
DLGAP4   70000 perm   16 sec   (4470 perm/sec)   p_kst 9.978571e-02   p_cons 1.520000e-02   p_joint 1.682857e-02

Joint ci ratio: 8.259091e-02	ci left: 2.625520e-02	ci right 2.852925e-02	k: 2190	n:80000
Cons ci ratio: 1.128824e-01	ci left: 1.401108e-02	ci right 1.569937e-02	k: 1187	n:80000
KS ci ratio: 4.153443e-02	ci left: 9.810280e-02	ci right 1.022762e-01	k: 8014	n:80000
DLGAP4   80000 perm   18 sec   (4393 perm/sec)   p_kst 1.001750e-01   p_cons 1.483750e-02   p_joint 2.737500e-02

Joint ci ratio: 7.767131e-02	ci left: 2.645219e-02	ci right 2.860064e-02	k: 2476	n:90000
Cons ci ratio: 1.059648e-01	ci left: 1.418351e-02	ci right 1.578130e-02	k: 1347	n:90000
KS ci ratio: 3.932374e-02	ci left: 9.747468e-02	ci right 1.013956e-01	k: 8948	n:90000
DLGAP4   90000 perm   21 sec   (4319 perm/sec)   p_kst 9.942222e-02   p_cons 1.496667e-02   p_joint 2.751111e-02

Joint ci ratio: 7.199789e-02	ci left: 2.775246e-02	ci right 2.983499e-02	k: 2878	n:100000
Cons ci ratio: 1.002481e-01	ci left: 1.430448e-02	ci right 1.582384e-02	k: 1505	n:100000
KS ci ratio: 3.722134e-02	ci left: 9.797865e-02	ci right 1.017046e-01	k: 9983	n:100000
DLGAP4   100000 perm   24 sec   (4238 perm/sec)   p_kst 9.983000e-02   p_cons 1.505000e-02   p_joint 2.878000e-02

Joint ci ratio: 7.005967e-02	ci left: 2.670236e-02	ci right 2.864993e-02	k: 3043	n:110000
Cons ci ratio: 9.513494e-02	ci left: 1.447636e-02	ci right 1.593118e-02	k: 1671	n:110000
KS ci ratio: 3.552583e-02	ci left: 9.788142e-02	ci right 1.014306e-01	k: 10961	n:110000
DLGAP4   110000 perm   26 sec   (4158 perm/sec)   p_kst 9.964545e-02   p_cons 1.519091e-02   p_joint 2.766364e-02

Outputting figure to mutsig2_images.part000000000050/DLGAP4.2_3142_110000_0.099645_0.015191_0.027664.png
                gene_name: DLGAP4
               theta_stop: 0.095 
                    nperm: 110000 
                     p_ks: 0.100 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 98 percent done.
DLK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.660682e-02	ci left: 5.242643e-01	ci right 5.439159e-01	k: 5341	n:10000
Cons ci ratio: 4.588733e-02	ci left: 4.120947e-01	ci right 4.315508e-01	k: 4218	n:10000
KS ci ratio: 5.713003e-02	ci left: 3.108607e-01	ci right 3.292442e-01	k: 3200	n:10000
DLK2   10000 perm   2 sec   (6639 perm/sec)   p_kst 3.200000e-01   p_cons 4.218000e-01   p_joint 5.341000e-01

Outputting figure to mutsig2_images.part000000000050/DLK2.2_1172_10000_0.32_0.4218_0.5341.png
                gene_name: DLK2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000050
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 50 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1702>
Subject: Job 9893915: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1702>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000051> was used as the working directory.
Started at Sat Oct  6 00:05:13 2012
Results reported at Sat Oct  6 00:16:45 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000051.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000051.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 51  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000051.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    695.03 sec.
    Max Memory :      3542 MB
    Max Swap   :      6016 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
51
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 51
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 51: processing genes 4509 - 4598
Calculating significance of each gene.
Using projection method.
4509	DLL4	8.247403e-01
4510	DLST	9.274105e-01
4511	DLX1	1
4512	DLX2	5.477615e-01
4513	DLX3	6.476885e-01
4514	DLX4	3.992748e-01
4515	DLX5	5.128553e-01
4516	DLX6	1
4517	DMAP1	1
4518	DMBT1	9.859491e-01
4519	DMBX1	8.770283e-01
4520	DMC1	2.215472e-01
In gene DMD the following bins exceed PROBCAP:
    COAD-AA-3560	categ 6	N = 11651   n = 1	mu =   2.76e-07
4521	DMD	2.446209e-07
4522	DMGDH	3.808437e-01
4523	DMKN	1.173929e-01
4524	DMP1	5.406082e-01
4525	DMPK	1
4526	DMRT1	1
4527	DMRT2	1.096393e-01
4528	DMRT3	6.290056e-01
4529	DMRTA1	2.905658e-01
4530	DMRTB1	5.897715e-01
4531	DMRTC2	2.950539e-01
4532	DMTF1	8.764572e-01
4533	DMWD	5.946554e-01
4534	DMXL1	2.154976e-01
4535	DMXL2	1.353425e-01
4536	DNA2	8.380868e-01
4537	DNAH1	9.898989e-01
4538	DNAH10	4.303305e-01
In gene DNAH11 the following bins exceed PROBCAP:
    COAD-AA-3854	categ 6	N = 13637   n = 1	mu =   2.96e-07
4539	DNAH11	9.389484e-02
4540	DNAH17	1
4541	DNAH2	9.767893e-02
4542	DNAH3	2.216173e-01
4543	DNAH5	8.547443e-07
4544	DNAH7	8.265586e-01
4545	DNAH8	2.101517e-01
4546	DNAH9	5.066319e-01
4547	DNAI1	3.046770e-01
4548	DNAI2	3.546568e-01
4549	DNAJA1	6.552115e-01
4550	DNAJA2	9.106232e-01
4551	DNAJA3	1.266784e-01
4552	DNAJA4	5.712109e-01
4553	DNAJB1	1
4554	DNAJB11	3.900544e-01
4555	DNAJB12	7.780209e-01
4556	DNAJB13	1.567820e-01
4557	DNAJB14	6.704598e-01
4558	DNAJB2	1
4559	DNAJB3	2.555190e-01
4560	DNAJB4	3.777656e-01
4561	DNAJB5	1.764841e-01
4562	DNAJB6	1
4563	DNAJB7	7.383652e-01
4564	DNAJB8	2.668937e-01
4565	DNAJB9	3.358036e-01
4566	DNAJC1	7.397418e-01
4567	DNAJC10	8.378706e-01
4568	DNAJC11	7.872852e-02
4569	DNAJC12	1
4570	DNAJC13	4.099924e-01
4571	DNAJC14	2.220683e-01
4572	DNAJC15	1
In gene DNAJC16 the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 2380    n = 1	mu =   1.72e-07
4573	DNAJC16	6.836258e-01
4574	DNAJC17	4.966265e-01
4575	DNAJC18	5.142827e-01
4576	DNAJC19	9.555147e-02
4577	DNAJC2	5.267940e-01
4578	DNAJC21	5.081435e-01
4579	DNAJC22	4.059608e-01
4580	DNAJC24	4.388166e-03
4581	DNAJC25	3.573252e-01
4582	DNAJC25-GNG10	1
4583	DNAJC27	2.871257e-01
4584	DNAJC28	1.518476e-01
4585	DNAJC3	8.861691e-01
4586	DNAJC30	4.270448e-01
4587	DNAJC4	1
4588	DNAJC5	1
4589	DNAJC5B	1.823083e-02
4590	DNAJC5G	2.633295e-01
4591	DNAJC6	8.472670e-01
4592	DNAJC7	7.881916e-01
4593	DNAJC8	3.620290e-01
4594	DNAJC9	7.476999e-01
4595	DNAL1	1
4596	DNAL4	1
4597	DNALI1	6.917620e-01
4598	DNASE1	1
Done

Running MutSig 2:
Scatter job 51: processing genes 4509 - 4598
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DNAH5
Processing conservation and coverage...
70% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.907287e-02	ci left: 6.356307e-01	ci right 6.544847e-01	k: 6451	n:10000
Cons ci ratio: 4.218414e-02	ci left: 4.534885e-01	ci right 4.731329e-01	k: 4633	n:10000
KS ci ratio: 3.453877e-02	ci left: 5.531109e-01	ci right 5.726525e-01	k: 5629	n:10000
DNAH5   10000 perm   5 sec   (2177 perm/sec)   p_kst 5.629000e-01   p_cons 4.633000e-01   p_joint 6.451000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH5.68_14191_10000_0.5629_0.4633_0.6451.png
                gene_name: DNAH5
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 2 percent done.
DMD
Processing conservation and coverage...
85% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.279515e-01	ci left: 8.028489e-02	ci right 9.135778e-02	k: 857	n:10000
Cons ci ratio: 2.143635e-02	ci left: 7.614214e-01	ci right 7.780212e-01	k: 7698	n:10000
KS ci ratio: 1.915330e-01	ci left: 3.633915e-02	ci right 4.413159e-02	k: 401	n:10000
DMD   10000 perm   4 sec   (2391 perm/sec)   p_kst 4.010000e-02   p_cons 7.698000e-01   p_joint 8.570000e-02

Joint ci ratio: 8.705255e-02	ci left: 8.802889e-02	ci right 9.609016e-02	k: 1840	n:20000
Cons ci ratio: 1.512783e-02	ci left: 7.646080e-01	ci right 7.763132e-01	k: 15410	n:20000
KS ci ratio: 1.345678e-01	ci left: 3.795510e-02	ci right 4.347944e-02	k: 813	n:20000
DMD   20000 perm   9 sec   (2147 perm/sec)   p_kst 4.065000e-02   p_cons 7.705000e-01   p_joint 9.200000e-02

Joint ci ratio: 7.053832e-02	ci left: 9.003158e-02	ci right 9.664741e-02	k: 2799	n:30000
Cons ci ratio: 1.227381e-02	ci left: 7.679483e-01	ci right 7.774655e-01	k: 23182	n:30000
KS ci ratio: 1.085836e-01	ci left: 3.936835e-02	ci right 4.392096e-02	k: 1248	n:30000
DMD   30000 perm   14 sec   (2155 perm/sec)   p_kst 4.160000e-02   p_cons 7.727333e-01   p_joint 9.330000e-02

Joint ci ratio: 6.201158e-02	ci left: 8.800155e-02	ci right 9.365802e-02	k: 3632	n:40000
Cons ci ratio: 1.049266e-02	ci left: 7.731398e-01	ci right 7.813199e-01	k: 31090	n:40000
KS ci ratio: 9.404630e-02	ci left: 3.966408e-02	ci right 4.360282e-02	k: 1664	n:40000
DMD   40000 perm   18 sec   (2169 perm/sec)   p_kst 4.160000e-02   p_cons 7.772500e-01   p_joint 9.080000e-02

Outputting figure to mutsig2_images.part000000000051/DMD.47_11651_40000_0.0416_0.77725_0.0908.png
                gene_name: DMD
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.094 

Current progress: 3 percent done.
DNAH10
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.576934e-02	ci left: 5.357789e-01	ci right 5.553945e-01	k: 5456	n:10000
Cons ci ratio: 5.884004e-02	ci left: 2.982644e-01	ci right 3.164479e-01	k: 3073	n:10000
KS ci ratio: 4.561562e-02	ci left: 4.149851e-01	ci right 4.344588e-01	k: 4247	n:10000
DNAH10   10000 perm   4 sec   (2485 perm/sec)   p_kst 4.247000e-01   p_cons 3.073000e-01   p_joint 5.456000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH10.43_13728_10000_0.4247_0.3073_0.5456.png
                gene_name: DNAH10
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 5 percent done.
DNAH2
Processing conservation and coverage...
73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.696151e-01	ci left: 4.638557e-02	ci right 5.507852e-02	k: 506	n:10000
Cons ci ratio: 8.036185e-02	ci left: 1.844192e-01	ci right 1.999605e-01	k: 1921	n:10000
KS ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
DNAH2   10000 perm   4 sec   (2548 perm/sec)   p_kst 4.450000e-02   p_cons 1.921000e-01   p_joint 5.060000e-02

Joint ci ratio: 1.079979e-01	ci left: 5.845301e-02	ci right 6.517508e-02	k: 1235	n:20000
Cons ci ratio: 5.639871e-02	ci left: 1.890341e-01	ci right 2.000549e-01	k: 3890	n:20000
KS ci ratio: 1.255149e-01	ci left: 4.357437e-02	ci right 4.945837e-02	k: 929	n:20000
DNAH2   20000 perm   9 sec   (2351 perm/sec)   p_kst 4.645000e-02   p_cons 1.945000e-01   p_joint 6.175000e-02

Joint ci ratio: 8.693766e-02	ci left: 6.070091e-02	ci right 6.625067e-02	k: 1903	n:30000
Cons ci ratio: 4.593964e-02	ci left: 1.907940e-01	ci right 1.997984e-01	k: 5858	n:30000
KS ci ratio: 1.037771e-01	ci left: 4.303921e-02	ci right 4.778266e-02	k: 1361	n:30000
DNAH2   30000 perm   13 sec   (2311 perm/sec)   p_kst 4.536667e-02   p_cons 1.952667e-01   p_joint 6.343333e-02

Joint ci ratio: 7.001240e-02	ci left: 7.012494e-02	ci right 7.523731e-02	k: 2906	n:40000
Cons ci ratio: 3.966199e-02	ci left: 1.923676e-01	ci right 2.001766e-01	k: 7850	n:40000
KS ci ratio: 9.002989e-02	ci left: 4.320920e-02	ci right 4.730714e-02	k: 1809	n:40000
DNAH2   40000 perm   18 sec   (2285 perm/sec)   p_kst 4.522500e-02   p_cons 1.962500e-01   p_joint 7.265000e-02

Outputting figure to mutsig2_images.part000000000051/DNAH2.42_13624_40000_0.045225_0.19625_0.07265.png
                gene_name: DNAH2
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.075 

Current progress: 6 percent done.
DNAH11
Processing conservation and coverage...
71% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.170467e-02	ci left: 3.554552e-01	ci right 3.744236e-01	k: 3649	n:10000
Cons ci ratio: 1.400872e-02	ci left: 8.804271e-01	ci right 8.929466e-01	k: 8868	n:10000
KS ci ratio: 7.031466e-02	ci left: 2.286929e-01	ci right 2.454605e-01	k: 2370	n:10000
DNAH11   10000 perm   4 sec   (2474 perm/sec)   p_kst 2.370000e-01   p_cons 8.868000e-01   p_joint 3.649000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH11.33_13901_10000_0.237_0.8868_0.3649.png
                gene_name: DNAH11
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 8 percent done.
DNAH8
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.265884e-02	ci left: 1.759564e-01	ci right 1.912283e-01	k: 1835	n:10000
Cons ci ratio: 1.037572e-01	ci left: 1.183824e-01	ci right 1.314370e-01	k: 1248	n:10000
KS ci ratio: 7.262567e-02	ci left: 2.173399e-01	ci right 2.338202e-01	k: 2255	n:10000
DNAH8   10000 perm   4 sec   (2398 perm/sec)   p_kst 2.255000e-01   p_cons 1.248000e-01   p_joint 1.835000e-01

Joint ci ratio: 5.927148e-02	ci left: 1.741044e-01	ci right 1.847890e-01	k: 3588	n:20000
Cons ci ratio: 7.377426e-02	ci left: 1.191178e-01	ci right 1.282919e-01	k: 2473	n:20000
KS ci ratio: 5.109878e-02	ci left: 2.215068e-01	ci right 2.331726e-01	k: 4546	n:20000
DNAH8   20000 perm   9 sec   (2176 perm/sec)   p_kst 2.273000e-01   p_cons 1.236500e-01   p_joint 1.794000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH8.33_13829_20000_0.2273_0.12365_0.1794.png
                gene_name: DNAH8
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 10 percent done.
DNAH9
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.983219e-02	ci left: 2.311621e-01	ci right 2.479899e-01	k: 2395	n:10000
Cons ci ratio: 6.468518e-02	ci left: 2.598323e-01	ci right 2.773027e-01	k: 2685	n:10000
KS ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
DNAH9   10000 perm   4 sec   (2599 perm/sec)   p_kst 1.086000e-01   p_cons 2.685000e-01   p_joint 2.395000e-01

Joint ci ratio: 5.504969e-02	ci left: 1.966522e-01	ci right 2.078345e-01	k: 4044	n:20000
Cons ci ratio: 4.518166e-02	ci left: 2.672313e-01	ci right 2.796347e-01	k: 5468	n:20000
KS ci ratio: 7.729207e-02	ci left: 1.095285e-01	ci right 1.183841e-01	k: 2278	n:20000
DNAH9   20000 perm   8 sec   (2480 perm/sec)   p_kst 1.139000e-01   p_cons 2.734000e-01   p_joint 2.022000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH9.32_13737_20000_0.1139_0.2734_0.2022.png
                gene_name: DNAH9
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 11 percent done.
DNAH3
Processing conservation and coverage...
79% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.281508e-02	ci left: 8.975446e-01	ci right 9.092192e-01	k: 9035	n:10000
Cons ci ratio: 2.710561e-02	ci left: 6.672307e-01	ci right 6.856665e-01	k: 6765	n:10000
KS ci ratio: 2.225164e-02	ci left: 7.477617e-01	ci right 7.646888e-01	k: 7563	n:10000
DNAH3   10000 perm   4 sec   (2822 perm/sec)   p_kst 7.563000e-01   p_cons 6.765000e-01   p_joint 9.035000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH3.26_12599_10000_0.7563_0.6765_0.9035.png
                gene_name: DNAH3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 13 percent done.
DMXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.905673e-02	ci left: 3.800254e-01	ci right 3.992390e-01	k: 3896	n:10000
Cons ci ratio: 7.374510e-02	ci left: 2.121107e-01	ci right 2.284526e-01	k: 2202	n:10000
KS ci ratio: 3.740117e-02	ci left: 5.135553e-01	ci right 5.332311e-01	k: 5234	n:10000
DMXL2   10000 perm   3 sec   (3188 perm/sec)   p_kst 5.234000e-01   p_cons 2.202000e-01   p_joint 3.896000e-01

Outputting figure to mutsig2_images.part000000000051/DMXL2.21_9286_10000_0.5234_0.2202_0.3896.png
                gene_name: DMXL2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 14 percent done.
DNAH1
Processing conservation and coverage...
76% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.268173e-01	ci left: 2.570435e-02	ci right 3.237377e-02	k: 289	n:10000
Cons ci ratio: 8.173326e-02	ci left: 1.793015e-01	ci right 1.946813e-01	k: 1869	n:10000
KS ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
DNAH1   10000 perm   4 sec   (2522 perm/sec)   p_kst 1.240000e-02   p_cons 1.869000e-01   p_joint 2.890000e-02

Joint ci ratio: 1.437437e-01	ci left: 3.326778e-02	ci right 3.846828e-02	k: 716	n:20000
Cons ci ratio: 5.763387e-02	ci left: 1.824080e-01	ci right 1.932829e-01	k: 3756	n:20000
KS ci ratio: 2.453702e-01	ci left: 1.105337e-02	ci right 1.419071e-02	k: 251	n:20000
DNAH1   20000 perm   8 sec   (2501 perm/sec)   p_kst 1.255000e-02   p_cons 1.878000e-01   p_joint 3.580000e-02

Joint ci ratio: 1.465282e-01	ci left: 2.159043e-02	ci right 2.503607e-02	k: 698	n:30000
Cons ci ratio: 4.706064e-02	ci left: 1.833943e-01	ci right 1.922663e-01	k: 5634	n:30000
KS ci ratio: 1.939500e-01	ci left: 1.212952e-02	ci right 1.476595e-02	k: 402	n:30000
DNAH1   30000 perm   13 sec   (2366 perm/sec)   p_kst 1.340000e-02   p_cons 1.878000e-01   p_joint 2.326667e-02

Joint ci ratio: 1.158525e-01	ci left: 2.621077e-02	ci right 2.945827e-02	k: 1112	n:40000
Cons ci ratio: 4.096516e-02	ci left: 1.824452e-01	ci right 1.901004e-01	k: 7450	n:40000
KS ci ratio: 1.684968e-01	ci left: 1.222427e-02	ci right 1.449719e-02	k: 533	n:40000
DNAH1   40000 perm   17 sec   (2405 perm/sec)   p_kst 1.332500e-02   p_cons 1.862500e-01   p_joint 2.780000e-02

Joint ci ratio: 1.229654e-01	ci left: 1.869381e-02	ci right 2.116237e-02	k: 995	n:50000
Cons ci ratio: 3.662047e-02	ci left: 1.830147e-01	ci right 1.898617e-01	k: 9321	n:50000
KS ci ratio: 1.495210e-01	ci left: 1.254531e-02	ci right 1.459174e-02	k: 677	n:50000
DNAH1   50000 perm   21 sec   (2398 perm/sec)   p_kst 1.354000e-02   p_cons 1.864200e-01   p_joint 1.990000e-02

Joint ci ratio: 1.160859e-01	ci left: 1.756631e-02	ci right 1.974726e-02	k: 1118	n:60000
Cons ci ratio: 3.325525e-02	ci left: 1.848971e-01	ci right 1.911665e-01	k: 11281	n:60000
KS ci ratio: 1.372308e-01	ci left: 1.249524e-02	ci right 1.435226e-02	k: 804	n:60000
DNAH1   60000 perm   25 sec   (2355 perm/sec)   p_kst 1.340000e-02   p_cons 1.880167e-01   p_joint 1.863333e-02

Joint ci ratio: 1.033368e-01	ci left: 1.910098e-02	ci right 2.119621e-02	k: 1409	n:70000
Cons ci ratio: 3.076441e-02	ci left: 1.853671e-01	ci right 1.911731e-01	k: 13178	n:70000
KS ci ratio: 1.265852e-01	ci left: 1.265817e-02	ci right 1.438250e-02	k: 945	n:70000
DNAH1   70000 perm   30 sec   (2357 perm/sec)   p_kst 1.350000e-02   p_cons 1.882571e-01   p_joint 2.012857e-02

Joint ci ratio: 9.267479e-02	ci left: 2.086028e-02	ci right 2.289960e-02	k: 1749	n:80000
Cons ci ratio: 2.883494e-02	ci left: 1.849496e-01	ci right 1.903731e-01	k: 15012	n:80000
KS ci ratio: 1.183621e-01	ci left: 1.272388e-02	ci right 1.433668e-02	k: 1081	n:80000
DNAH1   80000 perm   34 sec   (2358 perm/sec)   p_kst 1.351250e-02   p_cons 1.876500e-01   p_joint 2.186250e-02

Joint ci ratio: 8.716557e-02	ci left: 2.101894e-02	ci right 2.294538e-02	k: 1977	n:90000
Cons ci ratio: 2.719242e-02	ci left: 1.850319e-01	ci right 1.901438e-01	k: 16882	n:90000
KS ci ratio: 1.106409e-01	ci left: 1.299394e-02	ci right 1.452652e-02	k: 1237	n:90000
DNAH1   90000 perm   38 sec   (2351 perm/sec)   p_kst 1.374444e-02   p_cons 1.875778e-01   p_joint 2.196667e-02

Joint ci ratio: 8.052346e-02	ci left: 2.221700e-02	ci right 2.409080e-02	k: 2314	n:100000
Cons ci ratio: 2.579099e-02	ci left: 1.852342e-01	ci right 1.900839e-01	k: 18765	n:100000
KS ci ratio: 1.050622e-01	ci left: 1.300815e-02	ci right 1.446026e-02	k: 1372	n:100000
DNAH1   100000 perm   43 sec   (2347 perm/sec)   p_kst 1.372000e-02   p_cons 1.876500e-01   p_joint 2.314000e-02

Joint ci ratio: 7.683021e-02	ci left: 2.222923e-02	ci right 2.401422e-02	k: 2542	n:110000
Cons ci ratio: 2.457653e-02	ci left: 1.855229e-01	ci right 1.901481e-01	k: 20661	n:110000
KS ci ratio: 1.002841e-01	ci left: 1.301250e-02	ci right 1.439514e-02	k: 1506	n:110000
DNAH1   110000 perm   47 sec   (2336 perm/sec)   p_kst 1.369091e-02   p_cons 1.878273e-01   p_joint 2.310909e-02

Joint ci ratio: 7.185656e-02	ci left: 2.332971e-02	ci right 2.507672e-02	k: 2903	n:120000
Cons ci ratio: 2.358654e-02	ci left: 1.848969e-01	ci right 1.893183e-01	k: 22452	n:120000
KS ci ratio: 9.577874e-02	ci left: 1.310687e-02	ci right 1.443345e-02	k: 1651	n:120000
DNAH1   120000 perm   52 sec   (2319 perm/sec)   p_kst 1.375833e-02   p_cons 1.871000e-01   p_joint 2.419167e-02

Outputting figure to mutsig2_images.part000000000051/DNAH1.19_13106_120000_0.013758_0.1871_0.024192.png
                gene_name: DNAH1
               theta_stop: 0.096 
                    nperm: 120000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 16 percent done.
DNAH7
Processing conservation and coverage...
81% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.429381e-02	ci left: 5.566188e-01	ci right 5.761425e-01	k: 5664	n:10000
Cons ci ratio: 9.180449e-02	ci left: 1.470751e-01	ci right 1.613269e-01	k: 1541	n:10000
KS ci ratio: 1.553508e-02	ci left: 8.574316e-01	ci right 8.709555e-01	k: 8643	n:10000
DNAH7   10000 perm   3 sec   (2967 perm/sec)   p_kst 8.643000e-01   p_cons 1.541000e-01   p_joint 5.664000e-01

Outputting figure to mutsig2_images.part000000000051/DNAH7.19_12335_10000_0.8643_0.1541_0.5664.png
                gene_name: DNAH7
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 17 percent done.
DMXL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.129090e-02	ci left: 2.813167e-01	ci right 2.992056e-01	k: 2902	n:10000
Cons ci ratio: 2.751516e-02	ci left: 6.605848e-01	ci right 6.791161e-01	k: 6699	n:10000
KS ci ratio: 1.062509e-01	ci left: 1.133992e-01	ci right 1.262232e-01	k: 1197	n:10000
DMXL1   10000 perm   3 sec   (3322 perm/sec)   p_kst 1.197000e-01   p_cons 6.699000e-01   p_joint 2.902000e-01

Joint ci ratio: 4.594423e-02	ci left: 2.606796e-01	ci right 2.729883e-01	k: 5336	n:20000
Cons ci ratio: 1.969488e-02	ci left: 6.579077e-01	ci right 6.710445e-01	k: 13290	n:20000
KS ci ratio: 7.472519e-02	ci left: 1.164121e-01	ci right 1.254984e-01	k: 2418	n:20000
DMXL1   20000 perm   7 sec   (3009 perm/sec)   p_kst 1.209000e-01   p_cons 6.645000e-01   p_joint 2.668000e-01

Outputting figure to mutsig2_images.part000000000051/DMXL1.18_9256_20000_0.1209_0.6645_0.2668.png
                gene_name: DMXL1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 19 percent done.
DNAJC13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.318302e-02	ci left: 5.727616e-01	ci right 5.921903e-01	k: 5825	n:10000
KS ci ratio: 6.453391e-03	ci left: 9.703722e-01	ci right 9.767479e-01	k: 9737	n:10000
DNAJC13   10000 perm   3 sec   (3910 perm/sec)   p_kst 9.737000e-01   p_cons 5.825000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNAJC13.10_6952_10000_0.9737_0.5825_1.png
                gene_name: DNAJC13
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
DMGDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.249646e-03	ci left: 9.720660e-01	ci right 9.782530e-01	k: 9753	n:10000
Cons ci ratio: 1.068561e-02	ci left: 9.257524e-01	ci right 9.357949e-01	k: 9309	n:10000
KS ci ratio: 1.076007e-02	ci left: 9.248228e-01	ci right 9.349250e-01	k: 9300	n:10000
DMGDH   10000 perm   2 sec   (5224 perm/sec)   p_kst 9.300000e-01   p_cons 9.309000e-01   p_joint 9.753000e-01

Outputting figure to mutsig2_images.part000000000051/DMGDH.7_2665_10000_0.93_0.9309_0.9753.png
                gene_name: DMGDH
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 22 percent done.
DNAJC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.028398e-01	ci left: 3.233938e-02	ci right 3.973408e-02	k: 359	n:10000
Cons ci ratio: 2.322340e-01	ci left: 2.447729e-02	ci right 3.100172e-02	k: 276	n:10000
KS ci ratio: 1.148705e-01	ci left: 9.827781e-02	ci right 1.103538e-01	k: 1042	n:10000
DNAJC11   10000 perm   2 sec   (5234 perm/sec)   p_kst 1.042000e-01   p_cons 2.760000e-02   p_joint 3.590000e-02

Joint ci ratio: 1.606734e-01	ci left: 2.657390e-02	ci right 3.126439e-02	k: 577	n:20000
Cons ci ratio: 1.718684e-01	ci left: 2.316787e-02	ci right 2.757159e-02	k: 506	n:20000
KS ci ratio: 7.949380e-02	ci left: 1.040745e-01	ci right 1.127398e-01	k: 2167	n:20000
DNAJC11   20000 perm   4 sec   (4774 perm/sec)   p_kst 1.083500e-01   p_cons 2.530000e-02   p_joint 2.885000e-02

Joint ci ratio: 1.313464e-01	ci left: 2.693656e-02	ci right 3.075541e-02	k: 864	n:30000
Cons ci ratio: 1.392546e-01	ci left: 2.393877e-02	ci right 2.755387e-02	k: 771	n:30000
KS ci ratio: 6.518820e-02	ci left: 1.040492e-01	ci right 1.110936e-01	k: 3226	n:30000
DNAJC11   30000 perm   7 sec   (4581 perm/sec)   p_kst 1.075333e-01   p_cons 2.570000e-02   p_joint 2.880000e-02

Joint ci ratio: 1.372859e-01	ci left: 1.860214e-02	ci right 2.136817e-02	k: 798	n:40000
Cons ci ratio: 1.196082e-01	ci left: 2.458383e-02	ci right 2.773547e-02	k: 1045	n:40000
KS ci ratio: 5.749077e-02	ci left: 1.011235e-01	ci right 1.071341e-01	k: 4164	n:40000
DNAJC11   40000 perm   9 sec   (4447 perm/sec)   p_kst 1.041000e-01   p_cons 2.612500e-02   p_joint 1.995000e-02

Joint ci ratio: 9.510600e-02	ci left: 3.129505e-02	ci right 3.443949e-02	k: 1642	n:50000
Cons ci ratio: 1.067926e-01	ci left: 2.483697e-02	ci right 2.765839e-02	k: 1311	n:50000
KS ci ratio: 5.114904e-02	ci left: 1.024248e-01	ci right 1.078211e-01	k: 5255	n:50000
DNAJC11   50000 perm   12 sec   (4342 perm/sec)   p_kst 1.051000e-01   p_cons 2.622000e-02   p_joint 3.284000e-02

Joint ci ratio: 8.897970e-02	ci left: 2.993740e-02	ci right 3.274151e-02	k: 1879	n:60000
Cons ci ratio: 9.558459e-02	ci left: 2.596184e-02	ci right 2.858416e-02	k: 1635	n:60000
KS ci ratio: 4.660258e-02	ci left: 1.030198e-01	ci right 1.079518e-01	k: 6328	n:60000
DNAJC11   60000 perm   14 sec   (4249 perm/sec)   p_kst 1.054667e-01   p_cons 2.725000e-02   p_joint 3.131667e-02

Outputting figure to mutsig2_images.part000000000051/DNAJC11.7_1744_60000_0.10547_0.02725_0.031317.png
                gene_name: DNAJC11
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 24 percent done.
DMBT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.259546e-01	ci left: 8.271234e-02	ci right 9.392883e-02	k: 882	n:10000
Cons ci ratio: 5.675160e-02	ci left: 3.137382e-01	ci right 3.321651e-01	k: 3229	n:10000
KS ci ratio: 1.531252e-01	ci left: 5.677313e-02	ci right 6.628428e-02	k: 614	n:10000
DMBT1   10000 perm   3 sec   (3901 perm/sec)   p_kst 6.140000e-02   p_cons 3.229000e-01   p_joint 8.820000e-02

Joint ci ratio: 9.100027e-02	ci left: 8.102361e-02	ci right 8.879757e-02	k: 1697	n:20000
Cons ci ratio: 4.029061e-02	ci left: 3.147301e-01	ci right 3.277219e-01	k: 6424	n:20000
KS ci ratio: 1.080911e-01	ci left: 5.835555e-02	ci right 6.507257e-02	k: 1233	n:20000
DMBT1   20000 perm   6 sec   (3570 perm/sec)   p_kst 6.165000e-02   p_cons 3.212000e-01   p_joint 8.485000e-02

Joint ci ratio: 6.014435e-02	ci left: 1.202904e-01	ci right 1.277826e-01	k: 3720	n:30000
Cons ci ratio: 3.281561e-02	ci left: 3.170122e-01	ci right 3.276222e-01	k: 9669	n:30000
KS ci ratio: 8.812986e-02	ci left: 5.913374e-02	ci right 6.461815e-02	k: 1855	n:30000
DMBT1   30000 perm   9 sec   (3446 perm/sec)   p_kst 6.183333e-02   p_cons 3.223000e-01   p_joint 1.240000e-01

Outputting figure to mutsig2_images.part000000000051/DMBT1.6_7454_30000_0.061833_0.3223_0.124.png
                gene_name: DMBT1
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 25 percent done.
DMKN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.135773e-02	ci left: 7.627374e-01	ci right 7.793044e-01	k: 7711	n:10000
Cons ci ratio: 4.798081e-02	ci left: 3.905776e-01	ci right 4.098806e-01	k: 4002	n:10000
KS ci ratio: 3.213000e-02	ci left: 5.884132e-01	ci right 6.077296e-01	k: 5981	n:10000
DMKN   10000 perm   2 sec   (5259 perm/sec)   p_kst 5.981000e-01   p_cons 4.002000e-01   p_joint 7.711000e-01

Outputting figure to mutsig2_images.part000000000051/DMKN.6_1812_10000_0.5981_0.4002_0.7711.png
                gene_name: DMKN
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 27 percent done.
DNA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.891436e-02	ci left: 6.381450e-01	ci right 6.569690e-01	k: 6476	n:10000
KS ci ratio: 6.590188e-03	ci left: 9.692095e-01	ci right 9.757113e-01	k: 9726	n:10000
DNA2   10000 perm   2 sec   (4781 perm/sec)   p_kst 9.726000e-01   p_cons 6.476000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNA2.6_3525_10000_0.9726_0.6476_1.png
                gene_name: DNA2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
DNAI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.807086e-02	ci left: 3.896815e-01	ci right 4.089772e-01	k: 3993	n:10000
Cons ci ratio: 1.953949e-02	ci left: 7.930377e-01	ci right 8.087866e-01	k: 8010	n:10000
KS ci ratio: 6.822271e-02	ci left: 2.396590e-01	ci right 2.566879e-01	k: 2481	n:10000
DNAI1   10000 perm   2 sec   (4863 perm/sec)   p_kst 2.481000e-01   p_cons 8.010000e-01   p_joint 3.993000e-01

Outputting figure to mutsig2_images.part000000000051/DNAI1.6_2180_10000_0.2481_0.801_0.3993.png
                gene_name: DNAI1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 30 percent done.
DNAI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.199832e-03	ci left: 9.800565e-01	ci right 9.852569e-01	k: 9828	n:10000
KS ci ratio: 1.126343e-02	ci left: 9.184254e-01	ci right 9.289262e-01	k: 9238	n:10000
DNAI2   10000 perm   2 sec   (5336 perm/sec)   p_kst 9.238000e-01   p_cons 9.828000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNAI2.5_1866_10000_0.9238_0.9828_1.png
                gene_name: DNAI2
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
DNAJC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.217680e-02	ci left: 5.877107e-01	ci right 6.070326e-01	k: 5974	n:10000
Cons ci ratio: 5.680355e-02	ci left: 3.133413e-01	ci right 3.317622e-01	k: 3225	n:10000
KS ci ratio: 4.418895e-02	ci left: 4.305389e-01	ci right 4.500959e-01	k: 4403	n:10000
DNAJC14   10000 perm   2 sec   (4972 perm/sec)   p_kst 4.403000e-01   p_cons 3.225000e-01   p_joint 5.974000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC14.5_2133_10000_0.4403_0.3225_0.5974.png
                gene_name: DNAJC14
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 33 percent done.
DNAJC5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.834659e-02	ci left: 6.471987e-01	ci right 6.659100e-01	k: 6566	n:10000
Cons ci ratio: 3.902208e-02	ci left: 4.923508e-01	ci right 5.120479e-01	k: 5022	n:10000
KS ci ratio: 4.654243e-02	ci left: 4.052191e-01	ci right 4.246305e-01	k: 4149	n:10000
DNAJC5B   10000 perm   2 sec   (6102 perm/sec)   p_kst 4.149000e-01   p_cons 5.022000e-01   p_joint 6.566000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC5B.5_616_10000_0.4149_0.5022_0.6566.png
                gene_name: DNAJC5B
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 35 percent done.
DMC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.217922e-02	ci left: 7.489754e-01	ci right 7.658744e-01	k: 7575	n:10000
Cons ci ratio: 1.026480e-02	ci left: 9.309212e-01	ci right 9.406231e-01	k: 9359	n:10000
KS ci ratio: 4.611379e-02	ci left: 4.097030e-01	ci right 4.291440e-01	k: 4194	n:10000
DMC1   10000 perm   2 sec   (5991 perm/sec)   p_kst 4.194000e-01   p_cons 9.359000e-01   p_joint 7.575000e-01

Outputting figure to mutsig2_images.part000000000051/DMC1.4_1075_10000_0.4194_0.9359_0.7575.png
                gene_name: DMC1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 37 percent done.
DMRT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.027723e-01	ci left: 1.204354e-01	ci right 1.335827e-01	k: 1269	n:10000
Cons ci ratio: 7.306490e-02	ci left: 2.152677e-01	ci right 2.316936e-01	k: 2234	n:10000
KS ci ratio: 1.266640e-01	ci left: 8.183830e-02	ci right 9.300341e-02	k: 873	n:10000
DMRT2   10000 perm   2 sec   (5657 perm/sec)   p_kst 8.730000e-02   p_cons 2.234000e-01   p_joint 1.269000e-01

Joint ci ratio: 7.649875e-02	ci left: 1.115930e-01	ci right 1.205189e-01	k: 2320	n:20000
Cons ci ratio: 5.130325e-02	ci left: 2.201197e-01	ci right 2.317601e-01	k: 4518	n:20000
KS ci ratio: 8.663852e-02	ci left: 8.881317e-02	ci right 9.690565e-02	k: 1856	n:20000
DMRT2   20000 perm   4 sec   (5033 perm/sec)   p_kst 9.280000e-02   p_cons 2.259000e-01   p_joint 1.160000e-01

Outputting figure to mutsig2_images.part000000000051/DMRT2.4_1755_20000_0.0928_0.2259_0.116.png
                gene_name: DMRT2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 38 percent done.
DNAJA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.881241e-02	ci left: 2.984627e-01	ci right 3.166495e-01	k: 3075	n:10000
Cons ci ratio: 6.798590e-02	ci left: 2.409439e-01	ci right 2.580023e-01	k: 2494	n:10000
KS ci ratio: 7.114081e-02	ci left: 2.245456e-01	ci right 2.412103e-01	k: 2328	n:10000
DNAJA3   10000 perm   2 sec   (5789 perm/sec)   p_kst 2.328000e-01   p_cons 2.494000e-01   p_joint 3.075000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJA3.4_1514_10000_0.2328_0.2494_0.3075.png
                gene_name: DNAJA3
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 40 percent done.
DNAJC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.396686e-02	ci left: 8.810413e-01	ci right 8.935320e-01	k: 8874	n:10000
KS ci ratio: 1.862795e-02	ci left: 8.080607e-01	ci right 8.233550e-01	k: 8158	n:10000
DNAJC10   10000 perm   2 sec   (5297 perm/sec)   p_kst 8.158000e-01   p_cons 8.874000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNAJC10.4_2470_10000_0.8158_0.8874_1.png
                gene_name: DNAJC10
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
DNAJC28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.920140e-02	ci left: 3.786320e-01	ci right 3.978331e-01	k: 3882	n:10000
Cons ci ratio: 6.337758e-02	ci left: 2.678488e-01	ci right 2.854815e-01	k: 2766	n:10000
KS ci ratio: 6.947002e-02	ci left: 2.330389e-01	ci right 2.499119e-01	k: 2414	n:10000
DNAJC28   10000 perm   2 sec   (5434 perm/sec)   p_kst 2.414000e-01   p_cons 2.766000e-01   p_joint 3.882000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC28.4_1171_10000_0.2414_0.2766_0.3882.png
                gene_name: DNAJC28
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 43 percent done.
DLX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.004477e-02	ci left: 6.203499e-01	ci right 6.393743e-01	k: 6299	n:10000
KS ci ratio: 2.913638e-02	ci left: 6.346251e-01	ci right 6.534909e-01	k: 6441	n:10000
DLX4   10000 perm   2 sec   (6343 perm/sec)   p_kst 6.441000e-01   p_cons 6.299000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DLX4.3_802_10000_0.6441_0.6299_1.png
                gene_name: DLX4
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
DLX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.103901e-02	ci left: 2.830009e-01	ci right 3.009204e-01	k: 2919	n:10000
Cons ci ratio: 2.777056e-02	ci left: 6.564574e-01	ci right 6.750460e-01	k: 6658	n:10000
KS ci ratio: 8.112025e-02	ci left: 1.815648e-01	ci right 1.970166e-01	k: 1892	n:10000
DLX5   10000 perm   2 sec   (5756 perm/sec)   p_kst 1.892000e-01   p_cons 6.658000e-01   p_joint 2.919000e-01

Outputting figure to mutsig2_images.part000000000051/DLX5.3_882_10000_0.1892_0.6658_0.2919.png
                gene_name: DLX5
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 46 percent done.
DMWD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.844739e-01	ci left: 3.920326e-02	ci right 4.726556e-02	k: 431	n:10000
Cons ci ratio: 3.922548e-02	ci left: 4.897515e-01	ci right 5.094487e-01	k: 4996	n:10000
KS ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
DMWD   10000 perm   2 sec   (5765 perm/sec)   p_kst 1.200000e-02   p_cons 4.996000e-01   p_joint 4.310000e-02

Joint ci ratio: 1.375911e-01	ci left: 3.631082e-02	ci right 4.172425e-02	k: 779	n:20000
Cons ci ratio: 2.867535e-02	ci left: 4.760524e-01	ci right 4.899526e-01	k: 9660	n:20000
KS ci ratio: 2.536541e-01	ci left: 1.030287e-02	ci right 1.334154e-02	k: 235	n:20000
DMWD   20000 perm   4 sec   (5117 perm/sec)   p_kst 1.175000e-02   p_cons 4.830000e-01   p_joint 3.895000e-02

Joint ci ratio: 1.118471e-01	ci left: 3.712929e-02	ci right 4.156049e-02	k: 1179	n:30000
Cons ci ratio: 2.332972e-02	ci left: 4.791297e-01	ci right 4.904732e-01	k: 14544	n:30000
KS ci ratio: 2.086053e-01	ci left: 1.041914e-02	ci right 1.287680e-02	k: 348	n:30000
DMWD   30000 perm   6 sec   (4626 perm/sec)   p_kst 1.160000e-02   p_cons 4.848000e-01   p_joint 3.930000e-02

Joint ci ratio: 9.605017e-02	ci left: 3.805175e-02	ci right 4.191540e-02	k: 1598	n:40000
Cons ci ratio: 2.034240e-02	ci left: 4.764925e-01	ci right 4.863102e-01	k: 19256	n:40000
KS ci ratio: 1.797485e-01	ci left: 1.069316e-02	ci right 1.282861e-02	k: 469	n:40000
DMWD   40000 perm   9 sec   (4343 perm/sec)   p_kst 1.172500e-02   p_cons 4.814000e-01   p_joint 3.995000e-02

Joint ci ratio: 9.237933e-02	ci left: 3.315197e-02	ci right 3.638234e-02	k: 1737	n:50000
Cons ci ratio: 1.821171e-02	ci left: 4.765518e-01	ci right 4.853304e-01	k: 24047	n:50000
KS ci ratio: 1.611196e-01	ci left: 1.075669e-02	ci right 1.266064e-02	k: 584	n:50000
DMWD   50000 perm   12 sec   (4227 perm/sec)   p_kst 1.168000e-02   p_cons 4.809400e-01   p_joint 3.474000e-02

Joint ci ratio: 6.981766e-02	ci left: 4.817123e-02	ci right 5.167247e-02	k: 2994	n:60000
Cons ci ratio: 1.612824e-02	ci left: 4.920913e-01	ci right 5.001091e-01	k: 29766	n:60000
KS ci ratio: 1.397145e-01	ci left: 1.204455e-02	ci right 1.386968e-02	k: 776	n:60000
DMWD   60000 perm   14 sec   (4195 perm/sec)   p_kst 1.293333e-02   p_cons 4.961000e-01   p_joint 4.990000e-02

Joint ci ratio: 5.787806e-02	ci left: 5.971724e-02	ci right 6.329064e-02	k: 4304	n:70000
Cons ci ratio: 1.494257e-02	ci left: 4.920321e-01	ci right 4.994540e-01	k: 34702	n:70000
KS ci ratio: 1.286693e-01	ci left: 1.224311e-02	ci right 1.394046e-02	k: 915	n:70000
DMWD   70000 perm   17 sec   (4121 perm/sec)   p_kst 1.307143e-02   p_cons 4.957429e-01   p_joint 6.148571e-02

Joint ci ratio: 7.233210e-02	ci left: 3.413012e-02	ci right 3.670371e-02	k: 2832	n:80000
Cons ci ratio: 1.441879e-02	ci left: 4.767450e-01	ci right 4.836815e-01	k: 38417	n:80000
KS ci ratio: 1.192592e-01	ci left: 1.252975e-02	ci right 1.413083e-02	k: 1065	n:80000
DMWD   80000 perm   20 sec   (4075 perm/sec)   p_kst 1.331250e-02   p_cons 4.802125e-01   p_joint 3.540000e-02

Joint ci ratio: 6.447142e-02	ci left: 3.818206e-02	ci right 4.073662e-02	k: 3550	n:90000
Cons ci ratio: 1.361694e-02	ci left: 4.761091e-01	ci right 4.826478e-01	k: 43144	n:90000
KS ci ratio: 1.118377e-01	ci left: 1.271299e-02	ci right 1.422972e-02	k: 1211	n:90000
DMWD   90000 perm   22 sec   (4033 perm/sec)   p_kst 1.345556e-02   p_cons 4.793778e-01   p_joint 3.944444e-02

Joint ci ratio: 5.495934e-02	ci left: 4.707797e-02	ci right 4.974830e-02	k: 4840	n:100000
Cons ci ratio: 1.290933e-02	ci left: 4.766192e-01	ci right 4.828220e-01	k: 47972	n:100000
KS ci ratio: 1.065271e-01	ci left: 1.264781e-02	ci right 1.408062e-02	k: 1335	n:100000
DMWD   100000 perm   25 sec   (3963 perm/sec)   p_kst 1.335000e-02   p_cons 4.797200e-01   p_joint 4.840000e-02

Joint ci ratio: 5.615019e-02	ci left: 4.123470e-02	ci right 4.362586e-02	k: 4666	n:110000
Cons ci ratio: 1.232388e-02	ci left: 4.761439e-01	ci right 4.820572e-01	k: 52701	n:110000
KS ci ratio: 1.015556e-01	ci left: 1.268451e-02	ci right 1.405041e-02	k: 1469	n:110000
DMWD   110000 perm   28 sec   (3889 perm/sec)   p_kst 1.335455e-02   p_cons 4.791000e-01   p_joint 4.241818e-02

Joint ci ratio: 6.247380e-02	ci left: 3.077334e-02	ci right 3.276604e-02	k: 3811	n:120000
Cons ci ratio: 1.178683e-02	ci left: 4.767947e-01	ci right 4.824562e-01	k: 57555	n:120000
KS ci ratio: 9.712896e-02	ci left: 1.274080e-02	ci right 1.404954e-02	k: 1606	n:120000
DMWD   120000 perm   31 sec   (3812 perm/sec)   p_kst 1.338333e-02   p_cons 4.796250e-01   p_joint 3.175833e-02

Outputting figure to mutsig2_images.part000000000051/DMWD.3_2045_120000_0.013383_0.47963_0.031758.png
                gene_name: DMWD
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 48 percent done.
DNAJB13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.422483e-02	ci left: 4.301399e-01	ci right 4.496951e-01	k: 4399	n:10000
Cons ci ratio: 5.036011e-02	ci left: 3.676872e-01	ci right 3.867843e-01	k: 3772	n:10000
KS ci ratio: 5.439761e-02	ci left: 3.324015e-01	ci right 3.510908e-01	k: 3417	n:10000
DNAJB13   10000 perm   2 sec   (5686 perm/sec)   p_kst 3.417000e-01   p_cons 3.772000e-01   p_joint 4.399000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJB13.3_983_10000_0.3417_0.3772_0.4399.png
                gene_name: DNAJB13
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 49 percent done.
DNAJB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.801281e-02	ci left: 5.054515e-01	ci right 5.251396e-01	k: 5153	n:10000
Cons ci ratio: 2.913003e-02	ci left: 6.347256e-01	ci right 6.535903e-01	k: 6442	n:10000
KS ci ratio: 6.898055e-02	ci left: 2.356076e-01	ci right 2.525417e-01	k: 2440	n:10000
DNAJB5   10000 perm   2 sec   (6248 perm/sec)   p_kst 2.440000e-01   p_cons 6.442000e-01   p_joint 5.153000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJB5.3_1279_10000_0.244_0.6442_0.5153.png
                gene_name: DNAJB5
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 51 percent done.
DNAJB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.859226e-02	ci left: 3.000492e-01	ci right 3.182621e-01	k: 3091	n:10000
Cons ci ratio: 9.468960e-02	ci left: 1.393291e-01	ci right 1.532776e-01	k: 1462	n:10000
KS ci ratio: 4.185486e-02	ci left: 4.573820e-01	ci right 4.770371e-01	k: 4672	n:10000
DNAJB8   10000 perm   2 sec   (6597 perm/sec)   p_kst 4.672000e-01   p_cons 1.462000e-01   p_joint 3.091000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJB8.3_703_10000_0.4672_0.1462_0.3091.png
                gene_name: DNAJB8
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 52 percent done.
DNAJB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.564270e-02	ci left: 6.912135e-01	ci right 7.092697e-01	k: 7003	n:10000
Cons ci ratio: 2.249299e-02	ci left: 7.437166e-01	ci right 7.607363e-01	k: 7523	n:10000
KS ci ratio: 4.755381e-02	ci left: 3.948596e-01	ci right 4.141961e-01	k: 4045	n:10000
DNAJB9   10000 perm   2 sec   (6400 perm/sec)   p_kst 4.045000e-01   p_cons 7.523000e-01   p_joint 7.003000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJB9.3_680_10000_0.4045_0.7523_0.7003.png
                gene_name: DNAJB9
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 54 percent done.
DNAJC16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.214301e-02	ci left: 7.495823e-01	ci right 7.664671e-01	k: 7581	n:10000
KS ci ratio: 3.073150e-02	ci left: 6.096996e-01	ci right 6.288309e-01	k: 6193	n:10000
DNAJC16   10000 perm   2 sec   (5563 perm/sec)   p_kst 6.193000e-01   p_cons 7.581000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNAJC16.3_2405_10000_0.6193_0.7581_1.png
                gene_name: DNAJC16
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
DNAJC18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.829530e-02	ci left: 5.017506e-01	ci right 5.214426e-01	k: 5116	n:10000
Cons ci ratio: 4.413521e-02	ci left: 4.311373e-01	ci right 4.506972e-01	k: 4409	n:10000
KS ci ratio: 5.571689e-02	ci left: 3.217772e-01	ci right 3.403213e-01	k: 3310	n:10000
DNAJC18   10000 perm   2 sec   (5976 perm/sec)   p_kst 3.310000e-01   p_cons 4.409000e-01   p_joint 5.116000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC18.3_1109_10000_0.331_0.4409_0.5116.png
                gene_name: DNAJC18
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 57 percent done.
DNAJC21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.609546e-02	ci left: 6.837536e-01	ci right 7.019339e-01	k: 6929	n:10000
Cons ci ratio: 3.023834e-02	ci left: 6.173352e-01	ci right 6.363908e-01	k: 6269	n:10000
KS ci ratio: 3.685020e-02	ci left: 5.209610e-01	ci right 5.406210e-01	k: 5308	n:10000
DNAJC21   10000 perm   2 sec   (6053 perm/sec)   p_kst 5.308000e-01   p_cons 6.269000e-01   p_joint 6.929000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC21.3_1783_10000_0.5308_0.6269_0.6929.png
                gene_name: DNAJC21
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 59 percent done.
DNAJC24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.986532e-02	ci left: 1.267935e-01	ci right 1.402208e-01	k: 1334	n:10000
Cons ci ratio: 1.655280e-01	ci left: 4.868974e-02	ci right 5.757286e-02	k: 530	n:10000
KS ci ratio: 3.193658e-02	ci left: 5.913239e-01	ci right 6.106172e-01	k: 6010	n:10000
DNAJC24   10000 perm   2 sec   (6270 perm/sec)   p_kst 6.010000e-01   p_cons 5.300000e-02   p_joint 1.334000e-01

Joint ci ratio: 6.945044e-02	ci left: 1.326075e-01	ci right 1.421982e-01	k: 2747	n:20000
Cons ci ratio: 1.150598e-01	ci left: 5.168573e-02	ci right 5.804447e-02	k: 1096	n:20000
KS ci ratio: 2.268752e-02	ci left: 5.919682e-01	ci right 6.056031e-01	k: 11976	n:20000
DNAJC24   20000 perm   4 sec   (5566 perm/sec)   p_kst 5.988000e-01   p_cons 5.480000e-02   p_joint 1.373500e-01

Joint ci ratio: 5.653161e-02	ci left: 1.342145e-01	ci right 1.420557e-01	k: 4143	n:30000
Cons ci ratio: 9.402220e-02	ci left: 5.218599e-02	ci right 5.736733e-02	k: 1642	n:30000
KS ci ratio: 1.849122e-02	ci left: 5.940962e-01	ci right 6.052178e-01	k: 17990	n:30000
DNAJC24   30000 perm   6 sec   (5364 perm/sec)   p_kst 5.996667e-01   p_cons 5.473333e-02   p_joint 1.381000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC24.3_466_30000_0.59967_0.054733_0.1381.png
                gene_name: DNAJC24
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 60 percent done.
DNAJC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.249378e-02	ci left: 1.765467e-01	ci right 1.918378e-01	k: 1841	n:10000
Cons ci ratio: 1.192588e-01	ci left: 9.165653e-02	ci right 1.033791e-01	k: 974	n:10000
KS ci ratio: 5.498298e-02	ci left: 3.276348e-01	ci right 3.462602e-01	k: 3369	n:10000
DNAJC7   10000 perm   2 sec   (5190 perm/sec)   p_kst 3.369000e-01   p_cons 9.740000e-02   p_joint 1.841000e-01

Joint ci ratio: 7.260678e-02	ci left: 1.225624e-01	ci right 1.318463e-01	k: 2543	n:20000
Cons ci ratio: 8.461913e-02	ci left: 9.278496e-02	ci right 1.010327e-01	k: 1937	n:20000
KS ci ratio: 3.946014e-02	ci left: 3.238316e-01	ci right 3.369178e-01	k: 6607	n:20000
DNAJC7   20000 perm   4 sec   (4613 perm/sec)   p_kst 3.303500e-01   p_cons 9.685000e-02   p_joint 1.271500e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC7.3_1541_20000_0.33035_0.09685_0.12715.png
                gene_name: DNAJC7
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 62 percent done.
DLL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.540566e-03	ci left: 9.605805e-01	ci right 9.679458e-01	k: 9644	n:10000
Cons ci ratio: 1.153289e-02	ci left: 9.149216e-01	ci right 9.256321e-01	k: 9204	n:10000
KS ci ratio: 3.600800e-02	ci left: 5.324742e-01	ci right 5.521012e-01	k: 5423	n:10000
DLL4   10000 perm   2 sec   (6001 perm/sec)   p_kst 5.423000e-01   p_cons 9.204000e-01   p_joint 9.644000e-01

Outputting figure to mutsig2_images.part000000000051/DLL4.2_2102_10000_0.5423_0.9204_0.9644.png
                gene_name: DLL4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 63 percent done.
DLX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.083093e-02	ci left: 7.715474e-01	ci right 7.878893e-01	k: 7798	n:10000
KS ci ratio: 4.767244e-02	ci left: 3.936645e-01	ci right 4.129918e-01	k: 4033	n:10000
DLX3   10000 perm   2 sec   (6521 perm/sec)   p_kst 4.033000e-01   p_cons 7.798000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DLX3.2_876_10000_0.4033_0.7798_1.png
                gene_name: DLX3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
DMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.848730e-02	ci left: 4.992504e-01	ci right 5.189443e-01	k: 5091	n:10000
Cons ci ratio: 6.494961e-02	ci left: 2.582492e-01	ci right 2.756868e-01	k: 2669	n:10000
KS ci ratio: 2.322310e-02	ci left: 7.314859e-01	ci right 7.487740e-01	k: 7402	n:10000
DMP1   10000 perm   2 sec   (6225 perm/sec)   p_kst 7.402000e-01   p_cons 2.669000e-01   p_joint 5.091000e-01

Outputting figure to mutsig2_images.part000000000051/DMP1.2_1562_10000_0.7402_0.2669_0.5091.png
                gene_name: DMP1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 67 percent done.
DMRT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.989420e-02	ci left: 7.871550e-01	ci right 8.030727e-01	k: 7952	n:10000
Cons ci ratio: 3.076409e-02	ci left: 6.091973e-01	ci right 6.283334e-01	k: 6188	n:10000
KS ci ratio: 1.511704e-01	ci left: 5.821938e-02	ci right 6.783712e-02	k: 629	n:10000
DMRT3   10000 perm   2 sec   (6600 perm/sec)   p_kst 6.290000e-02   p_cons 6.188000e-01   p_joint 7.952000e-01

Joint ci ratio: 9.919287e-03	ci left: 8.820226e-01	ci right 8.908647e-01	k: 17730	n:20000
Cons ci ratio: 2.169008e-02	ci left: 6.134316e-01	ci right 6.269334e-01	k: 12404	n:20000
KS ci ratio: 1.071685e-01	ci left: 5.933027e-02	ci right 6.609755e-02	k: 1253	n:20000
DMRT3   20000 perm   3 sec   (5732 perm/sec)   p_kst 6.265000e-02   p_cons 6.202000e-01   p_joint 8.865000e-01

Joint ci ratio: 5.696296e-02	ci left: 1.324361e-01	ci right 1.402344e-01	k: 4089	n:30000
Cons ci ratio: 1.774653e-02	ci left: 6.137106e-01	ci right 6.247329e-01	k: 18577	n:30000
KS ci ratio: 8.772748e-02	ci left: 5.965607e-02	ci right 6.516238e-02	k: 1871	n:30000
DMRT3   30000 perm   6 sec   (5345 perm/sec)   p_kst 6.236667e-02   p_cons 6.192333e-01   p_joint 1.363000e-01

Outputting figure to mutsig2_images.part000000000051/DMRT3.2_1427_30000_0.062367_0.61923_0.1363.png
                gene_name: DMRT3
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 68 percent done.
DMRTA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.284443e-02	ci left: 8.971340e-01	ci right 9.088300e-01	k: 9031	n:10000
Cons ci ratio: 5.079150e-02	ci left: 3.637086e-01	ci right 3.827653e-01	k: 3732	n:10000
KS ci ratio: 2.772066e-02	ci left: 6.572627e-01	ci right 6.758402e-01	k: 6666	n:10000
DMRTA1   10000 perm   2 sec   (6204 perm/sec)   p_kst 6.666000e-01   p_cons 3.732000e-01   p_joint 9.031000e-01

Outputting figure to mutsig2_images.part000000000051/DMRTA1.2_1523_10000_0.6666_0.3732_0.9031.png
                gene_name: DMRTA1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 70 percent done.
DMRTC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.246886e-02	ci left: 7.441210e-01	ci right 7.611316e-01	k: 7527	n:10000
Cons ci ratio: 3.648931e-02	ci left: 5.258660e-01	ci right 5.455132e-01	k: 5357	n:10000
KS ci ratio: 4.072075e-02	ci left: 4.710641e-01	ci right 4.907470e-01	k: 4809	n:10000
DMRTC2   10000 perm   1 sec   (6689 perm/sec)   p_kst 4.809000e-01   p_cons 5.357000e-01   p_joint 7.527000e-01

Outputting figure to mutsig2_images.part000000000051/DMRTC2.2_1136_10000_0.4809_0.5357_0.7527.png
                gene_name: DMRTC2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 71 percent done.
DMTF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.064282e-02	ci left: 2.856761e-01	ci right 3.036436e-01	k: 2946	n:10000
KS ci ratio: 4.310302e-02	ci left: 4.428093e-01	ci right 4.624183e-01	k: 4526	n:10000
DMTF1   10000 perm   2 sec   (6066 perm/sec)   p_kst 4.526000e-01   p_cons 2.946000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DMTF1.2_2347_10000_0.4526_0.2946_1.png
                gene_name: DMTF1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
DNAJA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.317481e-02	ci left: 7.322943e-01	ci right 7.495652e-01	k: 7410	n:10000
KS ci ratio: 3.637213e-02	ci left: 5.274678e-01	ci right 5.471105e-01	k: 5373	n:10000
DNAJA1   10000 perm   1 sec   (6738 perm/sec)   p_kst 5.373000e-01   p_cons 7.410000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNAJA1.2_1226_10000_0.5373_0.741_1.png
                gene_name: DNAJA1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
DNAJA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.911732e-02	ci left: 6.349268e-01	ci right 6.537891e-01	k: 6444	n:10000
Cons ci ratio: 2.650079e-02	ci left: 6.771026e-01	ci right 6.953888e-01	k: 6863	n:10000
KS ci ratio: 5.372743e-02	ci left: 3.379640e-01	ci right 3.567250e-01	k: 3473	n:10000
DNAJA4   10000 perm   1 sec   (6668 perm/sec)   p_kst 3.473000e-01   p_cons 6.863000e-01   p_joint 6.444000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJA4.2_1368_10000_0.3473_0.6863_0.6444.png
                gene_name: DNAJA4
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 76 percent done.
DNAJB11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.750921e-02	ci left: 8.262552e-01	ci right 8.409500e-01	k: 8337	n:10000
KS ci ratio: 2.699424e-02	ci left: 6.690435e-01	ci right 6.874525e-01	k: 6783	n:10000
DNAJB11   10000 perm   2 sec   (5733 perm/sec)   p_kst 6.783000e-01   p_cons 8.337000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNAJB11.2_1117_10000_0.6783_0.8337_1.png
                gene_name: DNAJB11
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
DNAJB12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.304874e-02	ci left: 8.942609e-01	ci right 9.061049e-01	k: 9003	n:10000
Cons ci ratio: 2.299376e-02	ci left: 7.353260e-01	ci right 7.525317e-01	k: 7440	n:10000
KS ci ratio: 4.149518e-02	ci left: 4.616756e-01	ci right 4.813410e-01	k: 4715	n:10000
DNAJB12   10000 perm   2 sec   (5936 perm/sec)   p_kst 4.715000e-01   p_cons 7.440000e-01   p_joint 9.003000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJB12.2_1262_10000_0.4715_0.744_0.9003.png
                gene_name: DNAJB12
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 79 percent done.
DNAJB14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.044451e-02	ci left: 4.744608e-01	ci right 4.941484e-01	k: 4843	n:10000
Cons ci ratio: 4.159520e-02	ci left: 4.604773e-01	ci right 4.801400e-01	k: 4703	n:10000
KS ci ratio: 3.400154e-02	ci left: 5.608290e-01	ci right 5.803299e-01	k: 5706	n:10000
DNAJB14   10000 perm   2 sec   (6551 perm/sec)   p_kst 5.706000e-01   p_cons 4.703000e-01   p_joint 4.843000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJB14.2_1172_10000_0.5706_0.4703_0.4843.png
                gene_name: DNAJB14
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 81 percent done.
DNAJB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.981327e-02	ci left: 6.239682e-01	ci right 6.429540e-01	k: 6335	n:10000
Cons ci ratio: 5.122849e-02	ci left: 3.597307e-01	ci right 3.787456e-01	k: 3692	n:10000
KS ci ratio: 4.923248e-02	ci left: 3.783335e-01	ci right 3.975319e-01	k: 3879	n:10000
DNAJB3   10000 perm   2 sec   (5952 perm/sec)   p_kst 3.879000e-01   p_cons 3.692000e-01   p_joint 6.335000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJB3.2_442_10000_0.3879_0.3692_0.6335.png
                gene_name: DNAJB3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 83 percent done.
DNAJB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.336085e-02	ci left: 2.138864e-01	ci right 2.302758e-01	k: 2220	n:10000
Cons ci ratio: 1.158652e-01	ci left: 9.671912e-02	ci right 1.087134e-01	k: 1026	n:10000
KS ci ratio: 1.082627e-01	ci left: 1.095910e-01	ci right 1.222338e-01	k: 1158	n:10000
DNAJB4   10000 perm   2 sec   (6013 perm/sec)   p_kst 1.158000e-01   p_cons 1.026000e-01   p_joint 2.220000e-01

Joint ci ratio: 6.945044e-02	ci left: 1.326075e-01	ci right 1.421982e-01	k: 2747	n:20000
Cons ci ratio: 8.111878e-02	ci left: 1.002931e-01	ci right 1.088222e-01	k: 2090	n:20000
KS ci ratio: 7.677970e-02	ci left: 1.108556e-01	ci right 1.197565e-01	k: 2305	n:20000
DNAJB4   20000 perm   4 sec   (5620 perm/sec)   p_kst 1.152500e-01   p_cons 1.045000e-01   p_joint 1.373500e-01

Outputting figure to mutsig2_images.part000000000051/DNAJB4.2_1026_20000_0.11525_0.1045_0.13735.png
                gene_name: DNAJB4
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 84 percent done.
DNAJC17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.864576e-02	ci left: 2.373862e-01	ci right 2.543621e-01	k: 2458	n:10000
KS ci ratio: 1.514227e-02	ci left: 8.634550e-01	ci right 8.767286e-01	k: 8702	n:10000
DNAJC17   10000 perm   2 sec   (6545 perm/sec)   p_kst 8.702000e-01   p_cons 2.458000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNAJC17.2_959_10000_0.8702_0.2458_1.png
                gene_name: DNAJC17
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
DNAJC19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.931779e-02	ci left: 1.542387e-01	ci right 1.687591e-01	k: 1614	n:10000
Cons ci ratio: 9.251487e-02	ci left: 1.451135e-01	ci right 1.592898e-01	k: 1521	n:10000
KS ci ratio: 2.106120e-02	ci left: 7.676987e-01	ci right 7.841402e-01	k: 7760	n:10000
DNAJC19   10000 perm   1 sec   (6996 perm/sec)   p_kst 7.760000e-01   p_cons 1.521000e-01   p_joint 1.614000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC19.2_375_10000_0.776_0.1521_0.1614.png
                gene_name: DNAJC19
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 87 percent done.
DNAJC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.895760e-03	ci left: 9.466899e-01	ci right 9.552449e-01	k: 9511	n:10000
Cons ci ratio: 1.242219e-02	ci left: 9.029877e-01	ci right 9.143730e-01	k: 9088	n:10000
KS ci ratio: 5.166009e-02	ci left: 3.558529e-01	ci right 3.748256e-01	k: 3653	n:10000
DNAJC2   10000 perm   2 sec   (6043 perm/sec)   p_kst 3.653000e-01   p_cons 9.088000e-01   p_joint 9.511000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC2.2_1934_10000_0.3653_0.9088_0.9511.png
                gene_name: DNAJC2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 89 percent done.
DNAJC22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.624806e-01	ci left: 5.051566e-02	ci right 5.954576e-02	k: 549	n:10000
Cons ci ratio: 2.357589e-01	ci left: 2.372311e-02	ci right 3.015646e-02	k: 268	n:10000
KS ci ratio: 1.929411e-02	ci left: 7.970962e-01	ci right 8.127257e-01	k: 8050	n:10000
DNAJC22   10000 perm   2 sec   (6291 perm/sec)   p_kst 8.050000e-01   p_cons 2.680000e-02   p_joint 5.490000e-02

Joint ci ratio: 1.293542e-01	ci left: 4.105370e-02	ci right 4.677985e-02	k: 877	n:20000
Cons ci ratio: 1.628626e-01	ci left: 2.585348e-02	ci right 3.048506e-02	k: 562	n:20000
KS ci ratio: 1.381190e-02	ci left: 7.954993e-01	ci right 8.066131e-01	k: 16022	n:20000
DNAJC22   20000 perm   3 sec   (5720 perm/sec)   p_kst 8.011000e-01   p_cons 2.810000e-02   p_joint 4.385000e-02

Joint ci ratio: 7.231838e-02	ci left: 8.596505e-02	ci right 9.244809e-02	k: 2675	n:30000
Cons ci ratio: 1.331807e-01	ci left: 2.619459e-02	ci right 2.996421e-02	k: 841	n:30000
KS ci ratio: 1.118286e-02	ci left: 7.992266e-01	ci right 8.082478e-01	k: 24113	n:30000
DNAJC22   30000 perm   6 sec   (5440 perm/sec)   p_kst 8.037667e-01   p_cons 2.803333e-02   p_joint 8.916667e-02

Joint ci ratio: 9.055515e-02	ci left: 4.272000e-02	ci right 4.679643e-02	k: 1789	n:40000
Cons ci ratio: 1.143810e-01	ci left: 2.689114e-02	ci right 3.017778e-02	k: 1140	n:40000
KS ci ratio: 9.667466e-03	ci left: 8.004027e-01	ci right 8.082031e-01	k: 32173	n:40000
DNAJC22   40000 perm   8 sec   (5290 perm/sec)   p_kst 8.043250e-01   p_cons 2.850000e-02   p_joint 4.472500e-02

Joint ci ratio: 8.744229e-02	ci left: 3.694788e-02	ci right 4.034595e-02	k: 1931	n:50000
Cons ci ratio: 1.020208e-01	ci left: 2.721494e-02	ci right 3.016011e-02	k: 1433	n:50000
KS ci ratio: 8.636524e-03	ci left: 8.011975e-01	ci right 8.081670e-01	k: 40235	n:50000
DNAJC22   50000 perm   10 sec   (5163 perm/sec)   p_kst 8.047000e-01   p_cons 2.866000e-02   p_joint 3.862000e-02

Joint ci ratio: 7.997447e-02	ci left: 3.695819e-02	ci right 4.005333e-02	k: 2309	n:60000
Cons ci ratio: 9.307070e-02	ci left: 2.737855e-02	ci right 3.006729e-02	k: 1722	n:60000
KS ci ratio: 7.886946e-03	ci left: 8.013875e-01	ci right 8.077497e-01	k: 48275	n:60000
DNAJC22   60000 perm   12 sec   (5037 perm/sec)   p_kst 8.045833e-01   p_cons 2.870000e-02   p_joint 3.848333e-02

Outputting figure to mutsig2_images.part000000000051/DNAJC22.2_1034_60000_0.80458_0.0287_0.038483.png
                gene_name: DNAJC22
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.040 

Current progress: 90 percent done.
DNAJC25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.072191e-01	ci left: 1.115436e-01	ci right 1.242799e-01	k: 1178	n:10000
Cons ci ratio: 6.259518e-02	ci left: 2.727991e-01	ci right 2.905282e-01	k: 2816	n:10000
KS ci ratio: 1.024491e-01	ci left: 1.211198e-01	ci right 1.342979e-01	k: 1276	n:10000
DNAJC25   10000 perm   2 sec   (6482 perm/sec)   p_kst 1.276000e-01   p_cons 2.816000e-01   p_joint 1.178000e-01

Joint ci ratio: 4.710513e-02	ci left: 2.511034e-01	ci right 2.632673e-01	k: 5143	n:20000
Cons ci ratio: 4.413084e-02	ci left: 2.766150e-01	ci right 2.891481e-01	k: 5657	n:20000
KS ci ratio: 7.135872e-02	ci left: 1.264021e-01	ci right 1.358055e-01	k: 2621	n:20000
DNAJC25   20000 perm   3 sec   (5823 perm/sec)   p_kst 1.310500e-01   p_cons 2.828500e-01   p_joint 2.571500e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC25.2_1099_20000_0.13105_0.28285_0.25715.png
                gene_name: DNAJC25
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 92 percent done.
DNAJC27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.859697e-02	ci left: 8.085685e-01	ci right 8.238468e-01	k: 8163	n:10000
KS ci ratio: 2.136983e-02	ci left: 7.625349e-01	ci right 7.791070e-01	k: 7709	n:10000
DNAJC27   10000 perm   2 sec   (6563 perm/sec)   p_kst 7.709000e-01   p_cons 8.163000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNAJC27.2_850_10000_0.7709_0.8163_1.png
                gene_name: DNAJC27
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
DNAJC30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.603533e-02	ci left: 1.644533e-01	ci right 1.793384e-01	k: 1718	n:10000
Cons ci ratio: 5.378673e-02	ci left: 3.374673e-01	ci right 3.562220e-01	k: 3468	n:10000
KS ci ratio: 8.446737e-02	ci left: 1.696626e-01	ci right 1.847259e-01	k: 1771	n:10000
DNAJC30   10000 perm   1 sec   (6961 perm/sec)   p_kst 1.771000e-01   p_cons 3.468000e-01   p_joint 1.718000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC30.2_685_10000_0.1771_0.3468_0.1718.png
                gene_name: DNAJC30
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 95 percent done.
DNAJC5G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.401013e-02	ci left: 4.325336e-01	ci right 4.521000e-01	k: 4423	n:10000
Cons ci ratio: 7.168258e-02	ci left: 2.218801e-01	ci right 2.384774e-01	k: 2301	n:10000
KS ci ratio: 6.553133e-03	ci left: 9.695265e-01	ci right 9.759942e-01	k: 9729	n:10000
DNAJC5G   10000 perm   1 sec   (7199 perm/sec)   p_kst 9.729000e-01   p_cons 2.301000e-01   p_joint 4.423000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC5G.2_586_10000_0.9729_0.2301_0.4423.png
                gene_name: DNAJC5G
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 97 percent done.
DNAJC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.445442e-03	ci left: 9.405580e-01	ci right 9.495805e-01	k: 9452	n:10000
KS ci ratio: 8.931779e-02	ci left: 1.542387e-01	ci right 1.687591e-01	k: 1614	n:10000
DNAJC6   10000 perm   2 sec   (5249 perm/sec)   p_kst 1.614000e-01   p_cons 9.452000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000051/DNAJC6.2_2818_10000_0.1614_0.9452_1.png
                gene_name: DNAJC6
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
DNAJC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.222750e-02	ci left: 7.481663e-01	ci right 7.650840e-01	k: 7567	n:10000
Cons ci ratio: 1.188309e-02	ci left: 9.102884e-01	ci right 9.212679e-01	k: 9159	n:10000
KS ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
DNAJC8   10000 perm   2 sec   (5806 perm/sec)   p_kst 5.242000e-01   p_cons 9.159000e-01   p_joint 7.567000e-01

Outputting figure to mutsig2_images.part000000000051/DNAJC8.2_798_10000_0.5242_0.9159_0.7567.png
                gene_name: DNAJC8
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000051
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 51 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1712>
Subject: Job 9893917: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1712>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000052> was used as the working directory.
Started at Sat Oct  6 00:05:26 2012
Results reported at Sat Oct  6 02:33:21 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000052.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000052.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 52  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000052.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   8969.84 sec.
    Max Memory :      3580 MB
    Max Swap   :      5996 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
52
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 52
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 52: processing genes 4599 - 4688
Calculating significance of each gene.
Using projection method.
4599	DNASE1L1	1
4600	DNASE1L2	1
4601	DNASE1L3	2.655931e-01
4602	DNASE2	1
4603	DNASE2B	1
4604	DND1	1
4605	DNER	1.928136e-02
4606	DNHD1	5.159006e-01
4607	DNLZ	1
4608	DNM1	9.888668e-02
4609	DNM1L	1.766132e-02
4610	DNM2	8.204658e-01
4611	DNM3	5.122394e-01
4612	DNMBP	6.890714e-01
4613	DNMT1	2.383496e-03
4614	DNMT3A	9.711469e-02
In gene DNMT3B the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 2690    n = 1	mu =   2.96e-07
4615	DNMT3B	1.880436e-01
4616	DNMT3L	9.299595e-01
4617	DNPEP	8.184004e-01
4618	DNTT	1.370390e-01
4619	DNTTIP1	8.465126e-01
4620	DNTTIP2	1.061845e-01
4621	DOC2A	7.830251e-01
4622	DOCK1	8.489307e-01
4623	DOCK10	5.008163e-01
4624	DOCK11	5.656111e-01
4625	DOCK2	6.371762e-05
4626	DOCK3	5.063781e-01
4627	DOCK4	5.869339e-01
4628	DOCK5	6.317281e-01
4629	DOCK6	9.987175e-01
4630	DOCK7	7.771575e-01
4631	DOCK8	8.039200e-01
4632	DOCK9	3.746536e-01
4633	DOHH	6.810735e-01
4634	DOK1	7.575189e-01
4635	DOK2	8.266785e-01
4636	DOK3	1
4637	DOK4	7.865569e-01
4638	DOK5	2.168177e-03
4639	DOK6	2.834937e-01
4640	DOK7	8.147523e-01
4641	DOLK	3.229714e-01
4642	DOLPP1	1
4643	DOM3Z	1
4644	DONSON	8.348018e-01
4645	DOPEY1	4.942212e-01
4646	DOPEY2	9.919135e-01
4647	DOT1L	9.988896e-01
4648	DPAGT1	3.933331e-01
4649	DPCD	5.273732e-01
4650	DPEP1	7.833962e-01
4651	DPEP2	7.755894e-01
4652	DPEP3	9.405113e-01
4653	DPF1	1
4654	DPF2	2.428147e-02
4655	DPF3	4.683238e-01
4656	DPH1	6.028357e-01
4657	DPH2	8.616095e-01
4658	DPH3	3.701272e-01
4659	DPH5	6.714221e-01
4660	DPM1	6.929081e-01
4661	DPM2	1
4662	DPM3	1
4663	DPP10	4.202678e-05
4664	DPP3	6.608062e-01
4665	DPP4	3.093615e-01
4666	DPP6	7.329586e-01
4667	DPP7	5.429532e-01
4668	DPP8	1.902123e-02
4669	DPP9	9.966913e-01
4670	DPPA2	6.827718e-01
4671	DPPA3	3.729292e-01
4672	DPPA4	5.170374e-01
4673	DPPA5	1
4674	DPRX	1
4675	DPT	5.224543e-01
4676	DPY19L1	2.150519e-01
4677	DPY19L2	4.412895e-01
4678	DPY19L3	7.047068e-01
4679	DPY19L4	9.671767e-01
4680	DPY30	8.541094e-02
4681	DPYD	7.161038e-04
4682	DPYS	3.987584e-02
4683	DPYSL2	2.232651e-01
4684	DPYSL3	6.804390e-01
4685	DPYSL4	5.657095e-01
4686	DPYSL5	9.372639e-01
4687	DQX1	8.948633e-01
4688	DR1	1
Done

Running MutSig 2:
Scatter job 52: processing genes 4599 - 4688
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DOCK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.377594e-01	ci left: 6.971834e-02	ci right 8.013090e-02	k: 748	n:10000
Cons ci ratio: 1.302908e-01	ci left: 7.756782e-02	ci right 8.847654e-02	k: 829	n:10000
KS ci ratio: 1.119563e-01	ci left: 1.030540e-01	ci right 1.153747e-01	k: 1091	n:10000
DOCK2   10000 perm   3 sec   (3499 perm/sec)   p_kst 1.091000e-01   p_cons 8.290000e-02   p_joint 7.480000e-02

Joint ci ratio: 1.017359e-01	ci left: 6.557403e-02	ci right 7.265187e-02	k: 1381	n:20000
Cons ci ratio: 9.794374e-02	ci left: 7.050696e-02	ci right 7.781743e-02	k: 1482	n:20000
KS ci ratio: 7.943217e-02	ci left: 1.042218e-01	ci right 1.128924e-01	k: 2170	n:20000
DOCK2   20000 perm   9 sec   (2312 perm/sec)   p_kst 1.085000e-01   p_cons 7.410000e-02   p_joint 6.905000e-02

Joint ci ratio: 6.551855e-02	ci left: 1.030966e-01	ci right 1.101131e-01	k: 3197	n:30000
Cons ci ratio: 7.895049e-02	ci left: 7.292764e-02	ci right 7.895479e-02	k: 2277	n:30000
KS ci ratio: 6.473949e-02	ci left: 1.053634e-01	ci right 1.124459e-01	k: 3266	n:30000
DOCK2   30000 perm   12 sec   (2513 perm/sec)   p_kst 1.088667e-01   p_cons 7.590000e-02   p_joint 1.065667e-01

Outputting figure to mutsig2_images.part000000000052/DOCK2.30_5701_30000_0.10887_0.0759_0.10657.png
                gene_name: DOCK2
               theta_stop: 0.079 
                    nperm: 30000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 2 percent done.
DNMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.342460e-02	ci left: 2.135905e-01	ci right 2.299719e-01	k: 2217	n:10000
Cons ci ratio: 1.429861e-01	ci left: 6.488166e-02	ci right 7.497062e-02	k: 698	n:10000
KS ci ratio: 5.493380e-02	ci left: 3.280320e-01	ci right 3.466628e-01	k: 3373	n:10000
DNMT1   10000 perm   2 sec   (4042 perm/sec)   p_kst 3.373000e-01   p_cons 6.980000e-02   p_joint 2.217000e-01

Joint ci ratio: 6.962678e-02	ci left: 1.320163e-01	ci right 1.415895e-01	k: 2735	n:20000
Cons ci ratio: 1.019739e-01	ci left: 6.528115e-02	ci right 7.234484e-02	k: 1375	n:20000
KS ci ratio: 3.856769e-02	ci left: 3.339808e-01	ci right 3.471655e-01	k: 6811	n:20000
DNMT1   20000 perm   5 sec   (3694 perm/sec)   p_kst 3.405500e-01   p_cons 6.875000e-02   p_joint 1.367500e-01

Joint ci ratio: 5.263502e-02	ci left: 1.519108e-01	ci right 1.601560e-01	k: 4680	n:30000
Cons ci ratio: 8.281044e-02	ci left: 6.661478e-02	ci right 7.240226e-02	k: 2084	n:30000
KS ci ratio: 3.158642e-02	ci left: 3.338418e-01	ci right 3.445894e-01	k: 10176	n:30000
DNMT1   30000 perm   9 sec   (3528 perm/sec)   p_kst 3.392000e-01   p_cons 6.946667e-02   p_joint 1.560000e-01

Outputting figure to mutsig2_images.part000000000052/DNMT1.19_5063_30000_0.3392_0.069467_0.156.png
                gene_name: DNMT1
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 4 percent done.
DOCK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.489697e-02	ci left: 3.283299e-01	ci right 3.469648e-01	k: 3376	n:10000
Cons ci ratio: 1.441687e-02	ci left: 8.743904e-01	ci right 8.871869e-01	k: 8809	n:10000
KS ci ratio: 1.009147e-01	ci left: 1.244452e-01	ci right 1.377705e-01	k: 1310	n:10000
DOCK3   10000 perm   3 sec   (3999 perm/sec)   p_kst 1.310000e-01   p_cons 8.809000e-01   p_joint 3.376000e-01

Joint ci ratio: 4.859271e-02	ci left: 2.394980e-01	ci right 2.514760e-01	k: 4909	n:20000
Cons ci ratio: 1.026347e-02	ci left: 8.748572e-01	ci right 8.839322e-01	k: 17589	n:20000
KS ci ratio: 7.246001e-02	ci left: 1.230054e-01	ci right 1.323032e-01	k: 2552	n:20000
DOCK3   20000 perm   5 sec   (3671 perm/sec)   p_kst 1.276000e-01   p_cons 8.794500e-01   p_joint 2.454500e-01

Outputting figure to mutsig2_images.part000000000052/DOCK3.17_6264_20000_0.1276_0.87945_0.24545.png
                gene_name: DOCK3
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 6 percent done.
DPP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.497592e-02	ci left: 5.468981e-01	ci right 5.664689e-01	k: 5567	n:10000
Cons ci ratio: 2.745299e-02	ci left: 6.615916e-01	ci right 6.801087e-01	k: 6709	n:10000
KS ci ratio: 5.196217e-02	ci left: 3.531686e-01	ci right 3.721115e-01	k: 3626	n:10000
DPP10   10000 perm   2 sec   (4398 perm/sec)   p_kst 3.626000e-01   p_cons 6.709000e-01   p_joint 5.567000e-01

Outputting figure to mutsig2_images.part000000000052/DPP10.16_2666_10000_0.3626_0.6709_0.5567.png
                gene_name: DPP10
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 8 percent done.
DOCK10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.315017e-02	ci left: 8.928248e-01	ci right 9.047417e-01	k: 8989	n:10000
Cons ci ratio: 8.236279e-03	ci left: 9.536741e-01	ci right 9.616565e-01	k: 9578	n:10000
KS ci ratio: 1.528263e-02	ci left: 8.613106e-01	ci right 8.746743e-01	k: 8681	n:10000
DOCK10   10000 perm   3 sec   (3653 perm/sec)   p_kst 8.681000e-01   p_cons 9.578000e-01   p_joint 8.989000e-01

Outputting figure to mutsig2_images.part000000000052/DOCK10.14_6785_10000_0.8681_0.9578_0.8989.png
                gene_name: DOCK10
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 10 percent done.
DOCK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.567934e-02	ci left: 6.906085e-01	ci right 7.086750e-01	k: 6997	n:10000
KS ci ratio: 7.616898e-03	ci left: 9.598466e-01	ci right 9.672802e-01	k: 9637	n:10000
DOCK7   10000 perm   3 sec   (3944 perm/sec)   p_kst 9.637000e-01   p_cons 6.997000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DOCK7.14_6526_10000_0.9637_0.6997_1.png
                gene_name: DOCK7
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
DPYD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.938332e-02	ci left: 2.943978e-01	ci right 3.125168e-01	k: 3034	n:10000
Cons ci ratio: 1.003866e-01	ci left: 1.256193e-01	ci right 1.389957e-01	k: 1322	n:10000
KS ci ratio: 3.602976e-02	ci left: 5.321738e-01	ci right 5.518018e-01	k: 5420	n:10000
DPYD   10000 perm   2 sec   (4409 perm/sec)   p_kst 5.420000e-01   p_cons 1.322000e-01   p_joint 3.034000e-01

Joint ci ratio: 4.821531e-02	ci left: 2.423740e-01	ci right 2.543992e-01	k: 4967	n:20000
Cons ci ratio: 7.129614e-02	ci left: 1.265990e-01	ci right 1.360085e-01	k: 2625	n:20000
KS ci ratio: 2.511132e-02	ci left: 5.422724e-01	ci right 5.561133e-01	k: 10984	n:20000
DPYD   20000 perm   5 sec   (4097 perm/sec)   p_kst 5.492000e-01   p_cons 1.312500e-01   p_joint 2.483500e-01

Outputting figure to mutsig2_images.part000000000052/DPYD.14_3213_20000_0.5492_0.13125_0.24835.png
                gene_name: DPYD
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 13 percent done.
DOCK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.298371e-02	ci left: 1.438386e-01	ci right 1.579654e-01	k: 1508	n:10000
Cons ci ratio: 1.060498e-01	ci left: 1.137899e-01	ci right 1.266323e-01	k: 1201	n:10000
KS ci ratio: 5.831909e-02	ci left: 3.020326e-01	ci right 3.202776e-01	k: 3111	n:10000
DOCK4   10000 perm   3 sec   (3837 perm/sec)   p_kst 3.111000e-01   p_cons 1.201000e-01   p_joint 1.508000e-01

Joint ci ratio: 5.101167e-02	ci left: 2.221013e-01	ci right 2.337779e-01	k: 4558	n:20000
Cons ci ratio: 7.403058e-02	ci left: 1.183798e-01	ci right 1.275301e-01	k: 2458	n:20000
KS ci ratio: 4.171894e-02	ci left: 2.998157e-01	ci right 3.126407e-01	k: 6124	n:20000
DOCK4   20000 perm   6 sec   (3624 perm/sec)   p_kst 3.062000e-01   p_cons 1.229000e-01   p_joint 2.279000e-01

Outputting figure to mutsig2_images.part000000000052/DOCK4.12_6109_20000_0.3062_0.1229_0.2279.png
                gene_name: DOCK4
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 15 percent done.
DNM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.944208e-02	ci left: 1.879635e-01	ci right 2.036141e-01	k: 1957	n:10000
Cons ci ratio: 5.575464e-02	ci left: 3.214794e-01	ci right 3.400192e-01	k: 3307	n:10000
KS ci ratio: 1.045236e-01	ci left: 1.168187e-01	ci right 1.298017e-01	k: 1232	n:10000
DNM1   10000 perm   2 sec   (4936 perm/sec)   p_kst 1.232000e-01   p_cons 3.307000e-01   p_joint 1.957000e-01

Joint ci ratio: 6.604713e-02	ci left: 1.447816e-01	ci right 1.547205e-01	k: 2994	n:20000
Cons ci ratio: 3.949584e-02	ci left: 3.234337e-01	ci right 3.365158e-01	k: 6599	n:20000
KS ci ratio: 7.481318e-02	ci left: 1.161662e-01	ci right 1.252444e-01	k: 2413	n:20000
DNM1   20000 perm   4 sec   (4497 perm/sec)   p_kst 1.206500e-01   p_cons 3.299500e-01   p_joint 1.497000e-01

Outputting figure to mutsig2_images.part000000000052/DNM1.11_2704_20000_0.12065_0.32995_0.1497.png
                gene_name: DNM1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 17 percent done.
DOCK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.262554e-03	ci left: 9.719600e-01	ci right 9.781590e-01	k: 9752	n:10000
KS ci ratio: 1.438252e-02	ci left: 8.749018e-01	ci right 8.876752e-01	k: 8814	n:10000
DOCK5   10000 perm   2 sec   (4177 perm/sec)   p_kst 8.814000e-01   p_cons 9.752000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DOCK5.11_5821_10000_0.8814_0.9752_1.png
                gene_name: DOCK5
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
DNHD1
Processing conservation and coverage...
69% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.596015e-02	ci left: 2.523139e-01	ci right 2.696255e-01	k: 2609	n:10000
Cons ci ratio: 4.310302e-02	ci left: 4.428093e-01	ci right 4.624183e-01	k: 4526	n:10000
KS ci ratio: 9.191022e-02	ci left: 1.467809e-01	ci right 1.610214e-01	k: 1538	n:10000
DNHD1   10000 perm   4 sec   (2702 perm/sec)   p_kst 1.538000e-01   p_cons 4.526000e-01   p_joint 2.609000e-01

Outputting figure to mutsig2_images.part000000000052/DNHD1.10_14435_10000_0.1538_0.4526_0.2609.png
                gene_name: DNHD1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 21 percent done.
DOCK11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.422220e-01	ci left: 6.555836e-02	ci right 7.569349e-02	k: 705	n:10000
Cons ci ratio: 2.945635e-01	ci left: 1.483579e-02	ci right 2.005075e-02	k: 173	n:10000
KS ci ratio: 5.115161e-02	ci left: 3.604268e-01	ci right 3.794491e-01	k: 3699	n:10000
DOCK11   10000 perm   2 sec   (4075 perm/sec)   p_kst 3.699000e-01   p_cons 1.730000e-02   p_joint 7.050000e-02

Joint ci ratio: 1.236440e-01	ci left: 4.488419e-02	ci right 5.084814e-02	k: 956	n:20000
Cons ci ratio: 2.133397e-01	ci left: 1.482744e-02	ci right 1.841508e-02	k: 331	n:20000
KS ci ratio: 3.629784e-02	ci left: 3.616097e-01	ci right 3.750286e-01	k: 7366	n:20000
DOCK11   20000 perm   5 sec   (3739 perm/sec)   p_kst 3.683000e-01   p_cons 1.655000e-02   p_joint 4.780000e-02

Joint ci ratio: 7.614633e-02	ci left: 7.806765e-02	ci right 8.428041e-02	k: 2434	n:30000
Cons ci ratio: 1.769217e-01	ci left: 1.467425e-02	ci right 1.755390e-02	k: 482	n:30000
KS ci ratio: 2.961474e-02	ci left: 3.632037e-01	ci right 3.741551e-01	k: 11060	n:30000
DOCK11   30000 perm   8 sec   (3603 perm/sec)   p_kst 3.686667e-01   p_cons 1.606667e-02   p_joint 8.113333e-02

Joint ci ratio: 6.737430e-02	ci left: 7.539017e-02	ci right 8.067128e-02	k: 3120	n:40000
Cons ci ratio: 1.604635e-01	ci left: 1.351942e-02	ci right 1.590179e-02	k: 587	n:40000
KS ci ratio: 2.575488e-02	ci left: 3.619997e-01	ci right 3.714697e-01	k: 14669	n:40000
DOCK11   40000 perm   11 sec   (3493 perm/sec)   p_kst 3.667250e-01   p_cons 1.467500e-02   p_joint 7.800000e-02

Joint ci ratio: 6.043181e-02	ci left: 7.526951e-02	ci right 7.997967e-02	k: 3880	n:50000
Cons ci ratio: 1.429324e-01	ci left: 1.375982e-02	ci right 1.589705e-02	k: 740	n:50000
KS ci ratio: 2.291484e-02	ci left: 3.649477e-01	ci right 3.734274e-01	k: 18459	n:50000
DOCK11   50000 perm   15 sec   (3353 perm/sec)   p_kst 3.691800e-01   p_cons 1.480000e-02   p_joint 7.760000e-02

Joint ci ratio: 5.427571e-02	ci left: 7.780834e-02	ci right 8.216572e-02	k: 4798	n:60000
Cons ci ratio: 1.297551e-01	ci left: 1.401031e-02	ci right 1.597035e-02	k: 898	n:60000
KS ci ratio: 2.091454e-02	ci left: 3.654031e-01	ci right 3.731428e-01	k: 22156	n:60000
DOCK11   60000 perm   18 sec   (3313 perm/sec)   p_kst 3.692667e-01   p_cons 1.496667e-02   p_joint 7.996667e-02

Joint ci ratio: 5.249881e-02	ci left: 7.183144e-02	ci right 7.571827e-02	k: 5163	n:70000
Cons ci ratio: 1.193716e-01	ci left: 1.426505e-02	ci right 1.608975e-02	k: 1061	n:70000
KS ci ratio: 1.941119e-02	ci left: 3.645399e-01	ci right 3.716996e-01	k: 25768	n:70000
DOCK11   70000 perm   21 sec   (3271 perm/sec)   p_kst 3.681143e-01   p_cons 1.515714e-02   p_joint 7.375714e-02

Joint ci ratio: 4.995265e-02	ci left: 6.968680e-02	ci right 7.326935e-02	k: 5717	n:80000
Cons ci ratio: 1.116020e-01	ci left: 1.433924e-02	ci right 1.604618e-02	k: 1214	n:80000
KS ci ratio: 1.814496e-02	ci left: 3.650934e-01	ci right 3.717911e-01	k: 29475	n:80000
DOCK11   80000 perm   25 sec   (3223 perm/sec)   p_kst 3.684375e-01   p_cons 1.517500e-02   p_joint 7.146250e-02

Joint ci ratio: 4.690665e-02	ci left: 7.031950e-02	ci right 7.370815e-02	k: 6480	n:90000
Cons ci ratio: 1.057262e-01	ci left: 1.424844e-02	ci right 1.584971e-02	k: 1353	n:90000
KS ci ratio: 1.710744e-02	ci left: 3.652806e-01	ci right 3.715946e-01	k: 33159	n:90000
DOCK11   90000 perm   28 sec   (3179 perm/sec)   p_kst 3.684333e-01   p_cons 1.503333e-02   p_joint 7.200000e-02

Joint ci ratio: 4.628400e-02	ci left: 6.537881e-02	ci right 6.848636e-02	k: 6692	n:100000
Cons ci ratio: 1.007931e-01	ci left: 1.414844e-02	ci right 1.565988e-02	k: 1489	n:100000
KS ci ratio: 1.620740e-02	ci left: 3.660780e-01	ci right 3.720696e-01	k: 36907	n:100000
DOCK11   100000 perm   32 sec   (3134 perm/sec)   p_kst 3.690700e-01   p_cons 1.489000e-02   p_joint 6.692000e-02

Joint ci ratio: 4.580399e-02	ci left: 6.099560e-02	ci right 6.386389e-02	k: 6866	n:110000
Cons ci ratio: 9.667293e-02	ci left: 1.401481e-02	ci right 1.544730e-02	k: 1619	n:110000
KS ci ratio: 1.545490e-02	ci left: 3.661656e-01	ci right 3.718777e-01	k: 40592	n:110000
DOCK11   110000 perm   36 sec   (3095 perm/sec)   p_kst 3.690182e-01   p_cons 1.471818e-02   p_joint 6.241818e-02

Outputting figure to mutsig2_images.part000000000052/DOCK11.10_6434_110000_0.36902_0.014718_0.062418.png
                gene_name: DOCK11
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.064 

Current progress: 23 percent done.
DOCK9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.439863e-02	ci left: 5.551154e-01	ci right 5.746468e-01	k: 5649	n:10000
Cons ci ratio: 1.215078e-02	ci left: 9.066881e-01	ci right 9.178704e-01	k: 9124	n:10000
KS ci ratio: 5.932719e-02	ci left: 2.947944e-01	ci right 3.129200e-01	k: 3038	n:10000
DOCK9   10000 perm   2 sec   (4173 perm/sec)   p_kst 3.038000e-01   p_cons 9.124000e-01   p_joint 5.649000e-01

Outputting figure to mutsig2_images.part000000000052/DOCK9.10_6625_10000_0.3038_0.9124_0.5649.png
                gene_name: DOCK9
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 25 percent done.
DOPEY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.206900e-02	ci left: 2.200047e-01	ci right 2.365539e-01	k: 2282	n:10000
Cons ci ratio: 1.912852e-01	ci left: 3.643453e-02	ci right 4.423614e-02	k: 402	n:10000
KS ci ratio: 1.473093e-02	ci left: 8.696873e-01	ci right 8.826927e-01	k: 8763	n:10000
DOPEY1   10000 perm   3 sec   (3994 perm/sec)   p_kst 8.763000e-01   p_cons 4.020000e-02   p_joint 2.282000e-01

Joint ci ratio: 4.370508e-02	ci left: 2.805384e-01	ci right 2.931237e-01	k: 5736	n:20000
Cons ci ratio: 1.291237e-01	ci left: 4.119905e-02	ci right 4.693445e-02	k: 880	n:20000
KS ci ratio: 1.042251e-02	ci left: 8.715050e-01	ci right 8.806854e-01	k: 17523	n:20000
DOPEY1   20000 perm   5 sec   (3656 perm/sec)   p_kst 8.761500e-01   p_cons 4.400000e-02   p_joint 2.868000e-01

Joint ci ratio: 4.081863e-02	ci left: 2.303105e-01	ci right 2.399408e-01	k: 7053	n:30000
Cons ci ratio: 1.093162e-01	ci left: 3.884897e-02	ci right 4.337378e-02	k: 1232	n:30000
KS ci ratio: 8.803153e-03	ci left: 8.647247e-01	ci right 8.724038e-01	k: 26058	n:30000
DOPEY1   30000 perm   8 sec   (3537 perm/sec)   p_kst 8.686000e-01   p_cons 4.106667e-02   p_joint 2.351000e-01

Joint ci ratio: 3.466452e-02	ci left: 2.380328e-01	ci right 2.464547e-01	k: 9689	n:40000
Cons ci ratio: 9.509402e-02	ci left: 3.880895e-02	ci right 4.270808e-02	k: 1629	n:40000
KS ci ratio: 7.596908e-03	ci left: 8.660585e-01	ci right 8.726878e-01	k: 34776	n:40000
DOPEY1   40000 perm   12 sec   (3449 perm/sec)   p_kst 8.694000e-01   p_cons 4.072500e-02   p_joint 2.422250e-01

Outputting figure to mutsig2_images.part000000000052/DOPEY1.10_7546_40000_0.8694_0.040725_0.24222.png
                gene_name: DOPEY1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 27 percent done.
DPP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.194744e-02	ci left: 4.562838e-01	ci right 4.759360e-01	k: 4661	n:10000
Cons ci ratio: 5.732748e-02	ci left: 3.093726e-01	ci right 3.277332e-01	k: 3185	n:10000
KS ci ratio: 5.969375e-02	ci left: 2.922170e-01	ci right 3.102989e-01	k: 3012	n:10000
DPP8   10000 perm   2 sec   (4755 perm/sec)   p_kst 3.012000e-01   p_cons 3.185000e-01   p_joint 4.661000e-01

Outputting figure to mutsig2_images.part000000000052/DPP8.10_2777_10000_0.3012_0.3185_0.4661.png
                gene_name: DPP8
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 29 percent done.
DNER
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.118285e-02	ci left: 6.027694e-01	ci right 6.219651e-01	k: 6124	n:10000
Cons ci ratio: 6.804040e-02	ci left: 2.406473e-01	ci right 2.576990e-01	k: 2491	n:10000
KS ci ratio: 2.553891e-02	ci left: 6.929276e-01	ci right 7.109546e-01	k: 7020	n:10000
DNER   10000 perm   2 sec   (4884 perm/sec)   p_kst 7.020000e-01   p_cons 2.491000e-01   p_joint 6.124000e-01

Outputting figure to mutsig2_images.part000000000052/DNER.9_2266_10000_0.702_0.2491_0.6124.png
                gene_name: DNER
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 31 percent done.
DNMT3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.169905e-02	ci left: 1.473694e-01	ci right 1.616325e-01	k: 1544	n:10000
Cons ci ratio: 7.148439e-03	ci left: 9.642561e-01	ci right 9.712679e-01	k: 9679	n:10000
KS ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
DNMT3A   10000 perm   2 sec   (4905 perm/sec)   p_kst 7.940000e-02   p_cons 9.679000e-01   p_joint 1.544000e-01

Joint ci ratio: 6.078369e-02	ci left: 1.668916e-01	ci right 1.774039e-01	k: 3442	n:20000
Cons ci ratio: 4.869871e-03	ci left: 9.676452e-01	ci right 9.724168e-01	k: 19402	n:20000
KS ci ratio: 9.526410e-02	ci left: 7.431994e-02	ci right 8.180328e-02	k: 1560	n:20000
DNMT3A   20000 perm   4 sec   (4470 perm/sec)   p_kst 7.800000e-02   p_cons 9.701000e-01   p_joint 1.721000e-01

Outputting figure to mutsig2_images.part000000000052/DNMT3A.9_2960_20000_0.078_0.9701_0.1721.png
                gene_name: DNMT3A
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 33 percent done.
DOCK8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.723172e-01	ci left: 4.494682e-02	ci right 5.351821e-02	k: 491	n:10000
Cons ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
KS ci ratio: 2.618745e-02	ci left: 6.822418e-01	ci right 7.004466e-01	k: 6914	n:10000
DOCK8   10000 perm   2 sec   (4048 perm/sec)   p_kst 6.914000e-01   p_cons 1.170000e-02   p_joint 4.910000e-02

Joint ci ratio: 1.250222e-01	ci left: 4.391389e-02	ci right 4.981875e-02	k: 936	n:20000
Cons ci ratio: 2.598528e-01	ci left: 9.787930e-03	ci right 1.275672e-02	k: 224	n:20000
KS ci ratio: 1.870250e-02	ci left: 6.806723e-01	ci right 6.935732e-01	k: 13743	n:20000
DOCK8   20000 perm   5 sec   (3692 perm/sec)   p_kst 6.871500e-01   p_cons 1.120000e-02   p_joint 4.680000e-02

Joint ci ratio: 8.926314e-02	ci left: 5.769763e-02	ci right 6.312122e-02	k: 1811	n:30000
Cons ci ratio: 2.132920e-01	ci left: 9.945298e-03	ci right 1.235078e-02	k: 333	n:30000
KS ci ratio: 1.524169e-02	ci left: 6.826891e-01	ci right 6.932078e-01	k: 20639	n:30000
DOCK8   30000 perm   8 sec   (3544 perm/sec)   p_kst 6.879667e-01   p_cons 1.110000e-02   p_joint 6.036667e-02

Joint ci ratio: 7.576429e-02	ci left: 6.034361e-02	ci right 6.512011e-02	k: 2508	n:40000
Cons ci ratio: 1.843685e-01	ci left: 1.014409e-02	ci right 1.222778e-02	k: 446	n:40000
KS ci ratio: 1.318490e-02	ci left: 6.838854e-01	ci right 6.929872e-01	k: 27538	n:40000
DOCK8   40000 perm   12 sec   (3453 perm/sec)   p_kst 6.884500e-01   p_cons 1.115000e-02   p_joint 6.270000e-02

Joint ci ratio: 8.047880e-02	ci left: 4.347400e-02	ci right 4.713903e-02	k: 2264	n:50000
Cons ci ratio: 1.501962e-01	ci left: 1.242976e-02	ci right 1.446731e-02	k: 671	n:50000
KS ci ratio: 1.181965e-02	ci left: 6.833963e-01	ci right 6.915419e-01	k: 34374	n:50000
DOCK8   50000 perm   15 sec   (3387 perm/sec)   p_kst 6.874800e-01   p_cons 1.342000e-02   p_joint 4.528000e-02

Joint ci ratio: 6.600741e-02	ci left: 5.368122e-02	ci right 5.736192e-02	k: 3330	n:60000
Cons ci ratio: 1.377520e-01	ci left: 1.239864e-02	ci right 1.424888e-02	k: 798	n:60000
KS ci ratio: 1.078808e-02	ci left: 6.838240e-01	ci right 6.912578e-01	k: 41253	n:60000
DOCK8   60000 perm   18 sec   (3333 perm/sec)   p_kst 6.875500e-01   p_cons 1.330000e-02   p_joint 5.550000e-02

Joint ci ratio: 5.859936e-02	ci left: 5.832227e-02	ci right 6.185716e-02	k: 4205	n:70000
Cons ci ratio: 1.280335e-01	ci left: 1.236761e-02	ci right 1.407310e-02	k: 924	n:70000
KS ci ratio: 9.977374e-03	ci left: 6.845529e-01	ci right 6.914315e-01	k: 48160	n:70000
DOCK8   70000 perm   21 sec   (3285 perm/sec)   p_kst 6.880000e-01   p_cons 1.320000e-02   p_joint 6.007143e-02

Joint ci ratio: 5.580879e-02	ci left: 5.646409e-02	ci right 5.971805e-02	k: 4646	n:80000
Cons ci ratio: 1.204676e-01	ci left: 1.227502e-02	ci right 1.386058e-02	k: 1044	n:80000
KS ci ratio: 9.332446e-03	ci left: 6.848015e-01	ci right 6.912348e-01	k: 55042	n:80000
DOCK8   80000 perm   25 sec   (3241 perm/sec)   p_kst 6.880250e-01   p_cons 1.305000e-02   p_joint 5.807500e-02

Joint ci ratio: 5.551638e-02	ci left: 5.102983e-02	ci right 5.395465e-02	k: 4723	n:90000
Cons ci ratio: 1.228360e-01	ci left: 1.050116e-02	ci right 1.188617e-02	k: 1006	n:90000
KS ci ratio: 8.808345e-03	ci left: 6.845159e-01	ci right 6.905831e-01	k: 61880	n:90000
DOCK8   90000 perm   28 sec   (3201 perm/sec)   p_kst 6.875556e-01   p_cons 1.117778e-02   p_joint 5.247778e-02

Joint ci ratio: 5.262459e-02	ci left: 5.118490e-02	ci right 5.396113e-02	k: 5256	n:100000
Cons ci ratio: 1.173783e-01	ci left: 1.038217e-02	ci right 1.168642e-02	k: 1102	n:100000
KS ci ratio: 8.356249e-03	ci left: 6.846769e-01	ci right 6.904322e-01	k: 68756	n:100000
DOCK8   100000 perm   32 sec   (3162 perm/sec)   p_kst 6.875600e-01   p_cons 1.102000e-02   p_joint 5.256000e-02

Joint ci ratio: 4.535481e-02	ci left: 6.214683e-02	ci right 6.503987e-02	k: 6994	n:110000
Cons ci ratio: 1.119765e-01	ci left: 1.040084e-02	ci right 1.164333e-02	k: 1211	n:110000
KS ci ratio: 7.960565e-03	ci left: 6.851797e-01	ci right 6.906649e-01	k: 75672	n:110000
DOCK8   110000 perm   35 sec   (3121 perm/sec)   p_kst 6.879273e-01   p_cons 1.100909e-02   p_joint 6.358182e-02

Joint ci ratio: 4.168566e-02	ci left: 6.720086e-02	ci right 7.007003e-02	k: 8235	n:120000
Cons ci ratio: 1.072990e-01	ci left: 1.040943e-02	ci right 1.159772e-02	k: 1319	n:120000
KS ci ratio: 7.621261e-03	ci left: 6.853198e-01	ci right 6.905711e-01	k: 82554	n:120000
DOCK8   120000 perm   39 sec   (3081 perm/sec)   p_kst 6.879500e-01   p_cons 1.099167e-02   p_joint 6.862500e-02

Joint ci ratio: 4.074936e-02	ci left: 6.509811e-02	ci right 6.781358e-02	k: 8638	n:130000
Cons ci ratio: 1.029804e-01	ci left: 1.045509e-02	ci right 1.159765e-02	k: 1432	n:130000
KS ci ratio: 7.325619e-03	ci left: 6.852268e-01	ci right 6.902726e-01	k: 89408	n:130000
DOCK8   130000 perm   43 sec   (3046 perm/sec)   p_kst 6.877538e-01   p_cons 1.101538e-02   p_joint 6.644615e-02

Joint ci ratio: 3.547629e-02	ci left: 7.878950e-02	ci right 8.164220e-02	k: 11229	n:140000
Cons ci ratio: 9.853405e-02	ci left: 1.062745e-02	ci right 1.173580e-02	k: 1564	n:140000
KS ci ratio: 7.056978e-03	ci left: 6.854511e-01	ci right 6.903125e-01	k: 96304	n:140000
DOCK8   140000 perm   47 sec   (3008 perm/sec)   p_kst 6.878857e-01   p_cons 1.117143e-02   p_joint 8.020714e-02

Outputting figure to mutsig2_images.part000000000052/DOCK8.9_6492_140000_0.68789_0.011171_0.080207.png
                gene_name: DOCK8
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.082 

Current progress: 35 percent done.
DNM1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.454932e-02	ci left: 4.265498e-01	ci right 4.460873e-01	k: 4363	n:10000
Cons ci ratio: 6.367975e-02	ci left: 2.659681e-01	ci right 2.835633e-01	k: 2747	n:10000
KS ci ratio: 4.339117e-02	ci left: 4.395167e-01	ci right 4.591129e-01	k: 4493	n:10000
DNM1L   10000 perm   2 sec   (5040 perm/sec)   p_kst 4.493000e-01   p_cons 2.747000e-01   p_joint 4.363000e-01

Outputting figure to mutsig2_images.part000000000052/DNM1L.8_2291_10000_0.4493_0.2747_0.4363.png
                gene_name: DNM1L
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 37 percent done.
DNMBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.703135e-02	ci left: 6.684392e-01	ci right 6.868572e-01	k: 6777	n:10000
Cons ci ratio: 7.054868e-02	ci left: 2.275079e-01	ci right 2.442463e-01	k: 2358	n:10000
KS ci ratio: 9.197123e-03	ci left: 9.433622e-01	ci right 9.521746e-01	k: 9479	n:10000
DNMBP   10000 perm   2 sec   (4503 perm/sec)   p_kst 9.479000e-01   p_cons 2.358000e-01   p_joint 6.777000e-01

Outputting figure to mutsig2_images.part000000000052/DNMBP.8_4798_10000_0.9479_0.2358_0.6777.png
                gene_name: DNMBP
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 38 percent done.
DNMT3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.406407e-02	ci left: 1.710391e-01	ci right 1.861486e-01	k: 1785	n:10000
Cons ci ratio: 4.799080e-02	ci left: 3.904780e-01	ci right 4.097802e-01	k: 4001	n:10000
KS ci ratio: 1.302908e-01	ci left: 7.756782e-02	ci right 8.847654e-02	k: 829	n:10000
DNMT3B   10000 perm   2 sec   (5283 perm/sec)   p_kst 8.290000e-02   p_cons 4.001000e-01   p_joint 1.785000e-01

Joint ci ratio: 7.394489e-02	ci left: 1.186258e-01	ci right 1.277841e-01	k: 2463	n:20000
Cons ci ratio: 3.394494e-02	ci left: 3.932004e-01	ci right 4.068287e-01	k: 8000	n:20000
KS ci ratio: 9.412430e-02	ci left: 7.603179e-02	ci right 8.359090e-02	k: 1595	n:20000
DNMT3B   20000 perm   4 sec   (4761 perm/sec)   p_kst 7.975000e-02   p_cons 4.000000e-01   p_joint 1.231500e-01

Outputting figure to mutsig2_images.part000000000052/DNMT3B.8_2690_20000_0.07975_0.4_0.12315.png
                gene_name: DNMT3B
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 40 percent done.
DNM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.266795e-02	ci left: 7.407845e-01	ci right 7.578701e-01	k: 7494	n:10000
Cons ci ratio: 2.140611e-02	ci left: 7.619276e-01	ci right 7.785147e-01	k: 7703	n:10000
KS ci ratio: 3.149235e-02	ci left: 5.980500e-01	ci right 6.172873e-01	k: 6077	n:10000
DNM3   10000 perm   2 sec   (5301 perm/sec)   p_kst 6.077000e-01   p_cons 7.703000e-01   p_joint 7.494000e-01

Outputting figure to mutsig2_images.part000000000052/DNM3.7_2676_10000_0.6077_0.7703_0.7494.png
                gene_name: DNM3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 42 percent done.
DNTT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.309032e-02	ci left: 7.337090e-01	ci right 7.509496e-01	k: 7424	n:10000
KS ci ratio: 9.009714e-03	ci left: 9.454415e-01	ci right 9.540941e-01	k: 9499	n:10000
DNTT   10000 perm   2 sec   (5821 perm/sec)   p_kst 9.499000e-01   p_cons 7.424000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DNTT.7_1574_10000_0.9499_0.7424_1.png
                gene_name: DNTT
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
DNTTIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.465067e-02	ci left: 7.076552e-01	ci right 7.254185e-01	k: 7166	n:10000
Cons ci ratio: 2.030862e-02	ci left: 7.802612e-01	ci right 7.963705e-01	k: 7884	n:10000
KS ci ratio: 4.683115e-02	ci left: 4.022303e-01	ci right 4.216210e-01	k: 4119	n:10000
DNTTIP2   10000 perm   2 sec   (4902 perm/sec)   p_kst 4.119000e-01   p_cons 7.884000e-01   p_joint 7.166000e-01

Outputting figure to mutsig2_images.part000000000052/DNTTIP2.7_2299_10000_0.4119_0.7884_0.7166.png
                gene_name: DNTTIP2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 46 percent done.
DOCK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.042826e-01	ci left: 1.173073e-01	ci right 1.303127e-01	k: 1237	n:10000
Cons ci ratio: 1.190559e-01	ci left: 9.194847e-02	ci right 1.036870e-01	k: 977	n:10000
KS ci ratio: 9.208707e-02	ci left: 1.462904e-01	ci right 1.605121e-01	k: 1533	n:10000
DOCK1   10000 perm   2 sec   (4356 perm/sec)   p_kst 1.533000e-01   p_cons 9.770000e-02   p_joint 1.237000e-01

Joint ci ratio: 7.748406e-02	ci left: 1.090370e-01	ci right 1.178757e-01	k: 2268	n:20000
Cons ci ratio: 7.967941e-02	ci left: 1.036324e-01	ci right 1.122820e-01	k: 2158	n:20000
KS ci ratio: 6.582755e-02	ci left: 1.456199e-01	ci right 1.555819e-01	k: 3011	n:20000
DOCK1   20000 perm   5 sec   (3969 perm/sec)   p_kst 1.505500e-01   p_cons 1.079000e-01   p_joint 1.134000e-01

Outputting figure to mutsig2_images.part000000000052/DOCK1.7_5806_20000_0.15055_0.1079_0.1134.png
                gene_name: DOCK1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 48 percent done.
DPY19L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.254388e-01	ci left: 1.197339e-02	ci right 1.671572e-02	k: 142	n:10000
Cons ci ratio: 5.153763e-03	ci left: 9.803783e-01	ci right 9.855349e-01	k: 9831	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
DPY19L1   10000 perm   2 sec   (5671 perm/sec)   p_kst 3.000000e-04   p_cons 9.831000e-01   p_joint 1.420000e-02

Joint ci ratio: 3.761731e-01	ci left: 4.386465e-03	ci right 6.461320e-03	k: 107	n:20000
Cons ci ratio: 3.611866e-03	ci left: 9.814797e-01	ci right 9.850778e-01	k: 19667	n:20000
KS ci ratio: 1.385617e+00	ci left: 1.407294e-04	ci right 7.210000e-04	k: 7	n:20000
DPY19L1   20000 perm   4 sec   (5066 perm/sec)   p_kst 3.500000e-04   p_cons 9.833500e-01   p_joint 5.350000e-03

Joint ci ratio: 4.646599e-01	ci left: 1.819386e-03	ci right 2.947120e-03	k: 70	n:30000
Cons ci ratio: 2.903977e-03	ci left: 9.823418e-01	ci right 9.852301e-01	k: 29515	n:30000
KS ci ratio: 1.181688e+00	ci left: 1.598575e-04	ci right 6.129261e-04	k: 10	n:30000
DPY19L1   30000 perm   6 sec   (4886 perm/sec)   p_kst 3.333333e-04   p_cons 9.838333e-01   p_joint 2.333333e-03

Joint ci ratio: 4.298239e-01	ci left: 1.630748e-03	ci right 2.543961e-03	k: 82	n:40000
Cons ci ratio: 2.617562e-03	ci left: 9.811669e-01	ci right 9.837624e-01	k: 39300	n:40000
KS ci ratio: 1.047468e+00	ci left: 1.730598e-04	ci right 5.556958e-04	k: 13	n:40000
DPY19L1   40000 perm   9 sec   (4681 perm/sec)   p_kst 3.250000e-04   p_cons 9.825000e-01   p_joint 2.050000e-03

Joint ci ratio: 4.061028e-01	ci left: 1.483550e-03	ci right 2.256126e-03	k: 92	n:50000
Cons ci ratio: 2.335462e-03	ci left: 9.813948e-01	ci right 9.837087e-01	k: 49129	n:50000
KS ci ratio: 9.798334e-01	ci left: 1.679171e-04	ci right 4.947562e-04	k: 15	n:50000
DPY19L1   50000 perm   11 sec   (4592 perm/sec)   p_kst 3.000000e-04   p_cons 9.825800e-01   p_joint 1.840000e-03

Joint ci ratio: 2.504394e-01	ci left: 3.557600e-03	ci right 4.591278e-03	k: 243	n:60000
Cons ci ratio: 2.190957e-03	ci left: 9.805099e-01	ci right 9.826765e-01	k: 58897	n:60000
KS ci ratio: 8.763852e-01	ci left: 1.906644e-04	ci right 4.944703e-04	k: 19	n:60000
DPY19L1   60000 perm   13 sec   (4491 perm/sec)   p_kst 3.166667e-04   p_cons 9.816167e-01   p_joint 4.050000e-03

Joint ci ratio: 2.499992e-01	ci left: 3.062660e-03	ci right 3.950710e-03	k: 244	n:70000
Cons ci ratio: 2.050792e-03	ci left: 9.801812e-01	ci right 9.822072e-01	k: 68685	n:70000
KS ci ratio: 8.356095e-01	ci left: 1.857140e-04	ci right 4.585455e-04	k: 21	n:70000
DPY19L1   70000 perm   16 sec   (4407 perm/sec)   p_kst 3.000000e-04   p_cons 9.812143e-01   p_joint 3.485714e-03

Joint ci ratio: 2.490367e-01	ci left: 2.703199e-03	ci right 3.483527e-03	k: 246	n:80000
Cons ci ratio: 1.923542e-03	ci left: 9.801453e-01	ci right 9.820446e-01	k: 78489	n:80000
KS ci ratio: 8.000416e-01	ci left: 1.822588e-04	ci right 4.313601e-04	k: 23	n:80000
DPY19L1   80000 perm   19 sec   (4319 perm/sec)   p_kst 2.875000e-04   p_cons 9.811125e-01   p_joint 3.075000e-03

Joint ci ratio: 2.343189e-01	ci left: 2.736891e-03	ci right 3.473491e-03	k: 278	n:90000
Cons ci ratio: 1.812452e-03	ci left: 9.802232e-01	ci right 9.820122e-01	k: 88302	n:90000
KS ci ratio: 7.278044e-01	ci left: 2.067407e-04	ci right 4.496110e-04	k: 28	n:90000
DPY19L1   90000 perm   21 sec   (4244 perm/sec)   p_kst 3.111111e-04   p_cons 9.811333e-01   p_joint 3.088889e-03

Joint ci ratio: 3.532353e-01	ci left: 1.013236e-03	ci right 1.456509e-03	k: 122	n:100000
Cons ci ratio: 1.719551e-03	ci left: 9.802676e-01	ci right 9.819644e-01	k: 98113	n:100000
KS ci ratio: 6.532125e-01	ci left: 2.437996e-04	ci right 4.867320e-04	k: 35	n:100000
DPY19L1   100000 perm   24 sec   (4177 perm/sec)   p_kst 3.500000e-04   p_cons 9.811300e-01   p_joint 1.220000e-03

Joint ci ratio: 2.343854e-01	ci left: 2.239205e-03	ci right 2.842047e-03	k: 278	n:110000
Cons ci ratio: 1.637599e-03	ci left: 9.803522e-01	ci right 9.819678e-01	k: 107929	n:110000
KS ci ratio: 6.275882e-01	ci left: 2.444754e-04	ci right 4.741328e-04	k: 38	n:110000
DPY19L1   110000 perm   27 sec   (4108 perm/sec)   p_kst 3.454545e-04   p_cons 9.811727e-01   p_joint 2.527273e-03

Joint ci ratio: 2.227128e-01	ci left: 2.288305e-03	ci right 2.869483e-03	k: 308	n:120000
Cons ci ratio: 1.559961e-03	ci left: 9.805772e-01	ci right 9.821161e-01	k: 117763	n:120000
KS ci ratio: 6.120940e-01	ci left: 2.381486e-04	ci right 4.538780e-04	k: 40	n:120000
DPY19L1   120000 perm   30 sec   (4047 perm/sec)   p_kst 3.333333e-04   p_cons 9.813583e-01   p_joint 2.566667e-03

Joint ci ratio: 2.202482e-01	ci left: 2.163125e-03	ci right 2.705604e-03	k: 315	n:130000
Cons ci ratio: 1.493243e-03	ci left: 9.807450e-01	ci right 9.822180e-01	k: 127594	n:130000
KS ci ratio: 5.842557e-01	ci left: 2.459371e-04	ci right 4.543425e-04	k: 44	n:130000
DPY19L1   130000 perm   33 sec   (3987 perm/sec)   p_kst 3.384615e-04   p_cons 9.814923e-01   p_joint 2.423077e-03

Joint ci ratio: 2.178621e-01	ci left: 2.055860e-03	ci right 2.565104e-03	k: 322	n:140000
Cons ci ratio: 1.434920e-03	ci left: 9.808751e-01	ci right 9.822906e-01	k: 137423	n:140000
KS ci ratio: 5.599000e-01	ci left: 2.528063e-04	ci right 4.545534e-04	k: 48	n:140000
DPY19L1   140000 perm   36 sec   (3927 perm/sec)   p_kst 3.428571e-04   p_cons 9.815929e-01   p_joint 2.300000e-03

Joint ci ratio: 2.142532e-01	ci left: 1.988160e-03	ci right 2.471403e-03	k: 333	n:150000
Cons ci ratio: 1.380851e-03	ci left: 9.810429e-01	ci right 9.824050e-01	k: 147260	n:150000
KS ci ratio: 5.383565e-01	ci left: 2.589177e-04	ci right 4.545827e-04	k: 52	n:150000
DPY19L1   150000 perm   39 sec   (3870 perm/sec)   p_kst 3.466667e-04   p_cons 9.817333e-01   p_joint 2.220000e-03

Joint ci ratio: 2.114325e-01	ci left: 1.917144e-03	ci right 2.376195e-03	k: 342	n:160000
Cons ci ratio: 1.340091e-03	ci left: 9.809804e-01	ci right 9.823020e-01	k: 157064	n:160000
KS ci ratio: 5.191226e-01	ci left: 2.643967e-04	ci right 4.544804e-04	k: 56	n:160000
DPY19L1   160000 perm   42 sec   (3817 perm/sec)   p_kst 3.500000e-04   p_cons 9.816500e-01   p_joint 2.137500e-03

Joint ci ratio: 2.142814e-01	ci left: 1.754236e-03	ci right 2.180682e-03	k: 333	n:170000
Cons ci ratio: 1.298899e-03	ci left: 9.810337e-01	ci right 9.823145e-01	k: 166886	n:170000
KS ci ratio: 4.977482e-01	ci left: 2.744823e-04	ci right 4.609003e-04	k: 61	n:170000
DPY19L1   170000 perm   45 sec   (3763 perm/sec)   p_kst 3.588235e-04   p_cons 9.816824e-01   p_joint 1.958824e-03

Joint ci ratio: 2.130190e-01	ci left: 1.677804e-03	ci right 2.082953e-03	k: 337	n:180000
Cons ci ratio: 1.257572e-03	ci left: 9.811888e-01	ci right 9.824289e-01	k: 176727	n:180000
KS ci ratio: 4.977534e-01	ci left: 2.592328e-04	ci right 4.352960e-04	k: 61	n:180000
DPY19L1   180000 perm   49 sec   (3710 perm/sec)   p_kst 3.388889e-04   p_cons 9.818167e-01   p_joint 1.872222e-03

Joint ci ratio: 2.169218e-01	ci left: 1.529728e-03	ci right 1.906789e-03	k: 325	n:190000
Cons ci ratio: 1.224773e-03	ci left: 9.811836e-01	ci right 9.823912e-01	k: 186541	n:190000
KS ci ratio: 4.684421e-01	ci left: 2.825692e-04	ci right 4.595774e-04	k: 69	n:190000
DPY19L1   190000 perm   52 sec   (3660 perm/sec)   p_kst 3.631579e-04   p_cons 9.817947e-01   p_joint 1.710526e-03

Joint ci ratio: 2.111699e-01	ci left: 1.538418e-03	ci right 1.906265e-03	k: 343	n:200000
Cons ci ratio: 1.193076e-03	ci left: 9.812199e-01	ci right 9.823961e-01	k: 196363	n:200000
KS ci ratio: 4.587164e-01	ci left: 2.816882e-04	ci right 4.533393e-04	k: 72	n:200000
DPY19L1   200000 perm   55 sec   (3614 perm/sec)   p_kst 3.600000e-04   p_cons 9.818150e-01   p_joint 1.715000e-03

Joint ci ratio: 2.058525e-01	ci left: 1.546400e-03	ci right 1.905673e-03	k: 361	n:210000
Cons ci ratio: 1.162942e-03	ci left: 9.812772e-01	ci right 9.824237e-01	k: 206190	n:210000
KS ci ratio: 4.466425e-01	ci left: 2.851501e-04	ci right 4.529571e-04	k: 76	n:210000
DPY19L1   210000 perm   59 sec   (3570 perm/sec)   p_kst 3.619048e-04   p_cons 9.818571e-01   p_joint 1.719048e-03

Joint ci ratio: 2.019853e-01	ci left: 1.536495e-03	ci right 1.885934e-03	k: 375	n:220000
Cons ci ratio: 1.138163e-03	ci left: 9.812281e-01	ci right 9.823500e-01	k: 215995	n:220000
KS ci ratio: 4.381886e-01	ci left: 2.843056e-04	ci right 4.475146e-04	k: 79	n:220000
DPY19L1   220000 perm   62 sec   (3525 perm/sec)   p_kst 3.590909e-04   p_cons 9.817955e-01   p_joint 1.704545e-03

Joint ci ratio: 1.664945e-01	ci left: 2.204149e-03	ci right 2.608554e-03	k: 552	n:230000
Cons ci ratio: 1.111372e-03	ci left: 9.812984e-01	ci right 9.823938e-01	k: 225826	n:230000
KS ci ratio: 4.301973e-01	ci left: 2.835620e-04	ci right 4.425184e-04	k: 82	n:230000
DPY19L1   230000 perm   66 sec   (3476 perm/sec)   p_kst 3.565217e-04   p_cons 9.818522e-01   p_joint 2.400000e-03

Joint ci ratio: 1.659025e-01	ci left: 2.128276e-03	ci right 2.517233e-03	k: 556	n:240000
Cons ci ratio: 1.088288e-03	ci left: 9.812995e-01	ci right 9.823721e-01	k: 235642	n:240000
KS ci ratio: 4.226278e-01	ci left: 2.829052e-04	ci right 4.379142e-04	k: 85	n:240000
DPY19L1   240000 perm   70 sec   (3434 perm/sec)   p_kst 3.541667e-04   p_cons 9.818417e-01   p_joint 2.316667e-03

Joint ci ratio: 1.637155e-01	ci left: 2.100667e-03	ci right 2.479019e-03	k: 571	n:250000
Cons ci ratio: 1.065149e-03	ci left: 9.813495e-01	ci right 9.823993e-01	k: 245470	n:250000
KS ci ratio: 4.131291e-01	ci left: 2.859067e-04	ci right 4.380707e-04	k: 89	n:250000
DPY19L1   250000 perm   74 sec   (3392 perm/sec)   p_kst 3.560000e-04   p_cons 9.818800e-01   p_joint 2.284000e-03

Joint ci ratio: 1.605200e-01	ci left: 2.104746e-03	ci right 2.475719e-03	k: 594	n:260000
Cons ci ratio: 1.045904e-03	ci left: 9.813101e-01	ci right 9.823407e-01	k: 255276	n:260000
KS ci ratio: 4.042433e-01	ci left: 2.887133e-04	ci right 4.381796e-04	k: 93	n:260000
DPY19L1   260000 perm   78 sec   (3348 perm/sec)   p_kst 3.576923e-04   p_cons 9.818308e-01   p_joint 2.284615e-03

Joint ci ratio: 1.584064e-01	ci left: 2.083685e-03	ci right 2.445651e-03	k: 610	n:270000
Cons ci ratio: 1.026702e-03	ci left: 9.813075e-01	ci right 9.823192e-01	k: 265091	n:270000
KS ci ratio: 4.000115e-01	ci left: 2.846782e-04	ci right 4.301038e-04	k: 95	n:270000
DPY19L1   270000 perm   82 sec   (3307 perm/sec)   p_kst 3.518519e-04   p_cons 9.818185e-01   p_joint 2.259259e-03

Joint ci ratio: 1.567504e-01	ci left: 2.053863e-03	ci right 2.406567e-03	k: 623	n:280000
Cons ci ratio: 1.007005e-03	ci left: 9.813596e-01	ci right 9.823518e-01	k: 274921	n:280000
KS ci ratio: 3.899835e-01	ci left: 2.905948e-04	ci right 4.343646e-04	k: 100	n:280000
DPY19L1   280000 perm   86 sec   (3266 perm/sec)   p_kst 3.571429e-04   p_cons 9.818607e-01   p_joint 2.225000e-03

Joint ci ratio: 1.580305e-01	ci left: 1.949907e-03	ci right 2.287753e-03	k: 613	n:290000
Cons ci ratio: 9.898333e-04	ci left: 9.813558e-01	ci right 9.823311e-01	k: 284736	n:290000
KS ci ratio: 3.824829e-01	ci left: 2.930282e-04	ci right 4.345125e-04	k: 104	n:290000
DPY19L1   290000 perm   90 sec   (3226 perm/sec)   p_kst 3.586207e-04   p_cons 9.818483e-01   p_joint 2.113793e-03

Joint ci ratio: 1.567620e-01	ci left: 1.916928e-03	ci right 2.246143e-03	k: 623	n:300000
Cons ci ratio: 9.709601e-04	ci left: 9.814470e-01	ci right 9.824037e-01	k: 294579	n:300000
KS ci ratio: 3.736882e-01	ci left: 2.983437e-04	ci right 4.382717e-04	k: 109	n:300000
DPY19L1   300000 perm   94 sec   (3185 perm/sec)   p_kst 3.633333e-04   p_cons 9.819300e-01   p_joint 2.076667e-03

Joint ci ratio: 1.533573e-01	ci left: 1.941912e-03	ci right 2.267508e-03	k: 651	n:310000
Cons ci ratio: 9.558020e-04	ci left: 9.814311e-01	ci right 9.823728e-01	k: 304391	n:310000
KS ci ratio: 3.623351e-01	ci left: 3.092129e-04	ci right 4.487928e-04	k: 116	n:310000
DPY19L1   310000 perm   99 sec   (3146 perm/sec)   p_kst 3.741935e-04   p_cons 9.819065e-01   p_joint 2.100000e-03

Joint ci ratio: 1.475777e-01	ci left: 2.037618e-03	ci right 2.365251e-03	k: 703	n:320000
Cons ci ratio: 9.381014e-04	ci left: 9.815397e-01	ci right 9.824640e-01	k: 314242	n:320000
KS ci ratio: 3.562957e-01	ci left: 3.109217e-04	ci right 4.483916e-04	k: 120	n:320000
DPY19L1   320000 perm   103 sec   (3110 perm/sec)   p_kst 3.750000e-04   p_cons 9.820062e-01   p_joint 2.196875e-03

Joint ci ratio: 1.478988e-01	ci left: 1.967112e-03	ci right 2.284157e-03	k: 700	n:330000
Cons ci ratio: 9.237811e-04	ci left: 9.815468e-01	ci right 9.824569e-01	k: 324062	n:330000
KS ci ratio: 3.505485e-01	ci left: 3.125451e-04	ci right 4.479969e-04	k: 124	n:330000
DPY19L1   330000 perm   107 sec   (3074 perm/sec)   p_kst 3.757576e-04   p_cons 9.820061e-01   p_joint 2.121212e-03

Joint ci ratio: 1.460365e-01	ci left: 1.960249e-03	ci right 2.271863e-03	k: 718	n:340000
Cons ci ratio: 9.093396e-04	ci left: 9.815832e-01	ci right 9.824791e-01	k: 333892	n:340000
KS ci ratio: 3.450708e-01	ci left: 3.140897e-04	ci right 4.476088e-04	k: 128	n:340000
DPY19L1   340000 perm   112 sec   (3039 perm/sec)   p_kst 3.764706e-04   p_cons 9.820353e-01   p_joint 2.111765e-03

Joint ci ratio: 1.441448e-01	ci left: 1.956557e-03	ci right 2.263208e-03	k: 737	n:350000
Cons ci ratio: 8.941720e-04	ci left: 9.816727e-01	ci right 9.825536e-01	k: 343741	n:350000
KS ci ratio: 3.424274e-01	ci left: 3.103366e-04	ci right 4.410259e-04	k: 130	n:350000
DPY19L1   350000 perm   117 sec   (3003 perm/sec)   p_kst 3.714286e-04   p_cons 9.821171e-01   p_joint 2.105714e-03

Joint ci ratio: 1.522148e-01	ci left: 1.698901e-03	ci right 1.981436e-03	k: 661	n:360000
Cons ci ratio: 8.815362e-04	ci left: 9.816841e-01	ci right 9.825526e-01	k: 353564	n:360000
KS ci ratio: 3.398438e-01	ci left: 3.067957e-04	ci right 4.348051e-04	k: 132	n:360000
DPY19L1   360000 perm   121 sec   (2969 perm/sec)   p_kst 3.666667e-04   p_cons 9.821222e-01   p_joint 1.836111e-03

Joint ci ratio: 1.518742e-01	ci left: 1.660782e-03	ci right 1.936304e-03	k: 664	n:370000
Cons ci ratio: 8.684169e-04	ci left: 9.817360e-01	ci right 9.825916e-01	k: 363402	n:370000
KS ci ratio: 3.360750e-01	ci left: 3.059240e-04	ci right 4.318473e-04	k: 135	n:370000
DPY19L1   370000 perm   126 sec   (2936 perm/sec)   p_kst 3.648649e-04   p_cons 9.821676e-01   p_joint 1.794595e-03

Joint ci ratio: 1.503011e-01	ci left: 1.652526e-03	ci right 1.923583e-03	k: 678	n:380000
Cons ci ratio: 8.572778e-04	ci left: 9.817267e-01	ci right 9.825712e-01	k: 373218	n:380000
KS ci ratio: 3.348474e-01	ci left: 3.002832e-04	ci right 4.233356e-04	k: 136	n:380000
DPY19L1   380000 perm   131 sec   (2903 perm/sec)   p_kst 3.578947e-04   p_cons 9.821526e-01   p_joint 1.784211e-03

Joint ci ratio: 1.496437e-01	ci left: 1.624959e-03	ci right 1.890224e-03	k: 684	n:390000
Cons ci ratio: 8.471127e-04	ci left: 9.816946e-01	ci right 9.825290e-01	k: 383025	n:390000
KS ci ratio: 3.277463e-01	ci left: 3.066890e-04	ci right 4.291401e-04	k: 142	n:390000
DPY19L1   390000 perm   136 sec   (2871 perm/sec)   p_kst 3.641026e-04   p_cons 9.821154e-01   p_joint 1.753846e-03

Joint ci ratio: 1.491029e-01	ci left: 1.596366e-03	ci right 1.855937e-03	k: 689	n:400000
Cons ci ratio: 8.350946e-04	ci left: 9.817577e-01	ci right 9.825803e-01	k: 392869	n:400000
KS ci ratio: 3.243619e-01	ci left: 3.059079e-04	ci right 4.265234e-04	k: 145	n:400000
DPY19L1   400000 perm   141 sec   (2841 perm/sec)   p_kst 3.625000e-04   p_cons 9.821725e-01   p_joint 1.722500e-03

Joint ci ratio: 1.533967e-01	ci left: 1.468247e-03	ci right 1.714493e-03	k: 651	n:410000
Cons ci ratio: 8.247731e-04	ci left: 9.817660e-01	ci right 9.825784e-01	k: 402692	n:410000
KS ci ratio: 3.210802e-01	ci left: 3.051711e-04	ci right 4.240282e-04	k: 148	n:410000
DPY19L1   410000 perm   146 sec   (2810 perm/sec)   p_kst 3.609756e-04   p_cons 9.821756e-01   p_joint 1.587805e-03

Joint ci ratio: 1.492174e-01	ci left: 1.518052e-03	ci right 1.765095e-03	k: 688	n:420000
Cons ci ratio: 8.143817e-04	ci left: 9.817932e-01	ci right 9.825954e-01	k: 412523	n:420000
KS ci ratio: 3.178961e-01	ci left: 3.044752e-04	ci right 4.216460e-04	k: 151	n:420000
DPY19L1   420000 perm   151 sec   (2780 perm/sec)   p_kst 3.595238e-04   p_cons 9.821976e-01   p_joint 1.638095e-03

Joint ci ratio: 1.482535e-01	ci left: 1.502899e-03	ci right 1.745756e-03	k: 697	n:430000
Cons ci ratio: 8.057098e-04	ci left: 9.817604e-01	ci right 9.825540e-01	k: 422329	n:430000
KS ci ratio: 3.148049e-01	ci left: 3.038173e-04	ci right 4.193692e-04	k: 154	n:430000
DPY19L1   430000 perm   157 sec   (2747 perm/sec)   p_kst 3.581395e-04   p_cons 9.821605e-01   p_joint 1.620930e-03

Joint ci ratio: 1.473081e-01	ci left: 1.488439e-03	ci right 1.727292e-03	k: 706	n:440000
Cons ci ratio: 7.967897e-04	ci left: 9.817521e-01	ci right 9.825369e-01	k: 432145	n:440000
KS ci ratio: 3.189500e-01	ci left: 2.885440e-04	ci right 4.000272e-04	k: 150	n:440000
DPY19L1   440000 perm   162 sec   (2713 perm/sec)   p_kst 3.409091e-04   p_cons 9.821477e-01   p_joint 1.604545e-03

Joint ci ratio: 1.472065e-01	ci left: 1.457502e-03	ci right 1.691214e-03	k: 707	n:450000
Cons ci ratio: 7.879595e-04	ci left: 9.817533e-01	ci right 9.825294e-01	k: 441965	n:450000
KS ci ratio: 3.168590e-01	ci left: 2.862217e-04	ci right 3.959357e-04	k: 152	n:450000
DPY19L1   450000 perm   168 sec   (2686 perm/sec)   p_kst 3.377778e-04   p_cons 9.821444e-01   p_joint 1.571111e-03

Joint ci ratio: 1.451697e-01	ci left: 1.467705e-03	ci right 1.699515e-03	k: 727	n:460000
Cons ci ratio: 7.809123e-04	ci left: 9.816863e-01	ci right 9.824554e-01	k: 451754	n:460000
KS ci ratio: 3.148086e-01	ci left: 2.840026e-04	ci right 3.920198e-04	k: 154	n:460000
DPY19L1   460000 perm   173 sec   (2658 perm/sec)   p_kst 3.347826e-04   p_cons 9.820739e-01   p_joint 1.580435e-03

Joint ci ratio: 1.435037e-01	ci left: 1.471342e-03	ci right 1.700830e-03	k: 744	n:470000
Cons ci ratio: 7.728270e-04	ci left: 9.816782e-01	ci right 9.824392e-01	k: 461569	n:470000
KS ci ratio: 3.079309e-01	ci left: 2.916903e-04	ci right 3.997322e-04	k: 161	n:470000
DPY19L1   470000 perm   179 sec   (2630 perm/sec)   p_kst 3.425532e-04   p_cons 9.820617e-01   p_joint 1.582979e-03

Joint ci ratio: 1.508866e-01	ci left: 1.298207e-03	ci right 1.512050e-03	k: 673	n:480000
Cons ci ratio: 7.651681e-04	ci left: 9.816620e-01	ci right 9.824155e-01	k: 471380	n:480000
KS ci ratio: 3.023813e-01	ci left: 2.971566e-04	ci right 4.048583e-04	k: 167	n:480000
DPY19L1   480000 perm   184 sec   (2604 perm/sec)   p_kst 3.479167e-04   p_cons 9.820417e-01   p_joint 1.402083e-03

Joint ci ratio: 1.506650e-01	ci left: 1.275640e-03	ci right 1.485429e-03	k: 675	n:490000
Cons ci ratio: 7.577317e-04	ci left: 9.816465e-01	ci right 9.823926e-01	k: 481191	n:490000
KS ci ratio: 3.005978e-01	ci left: 2.948651e-04	ci right 4.009854e-04	k: 169	n:490000
DPY19L1   490000 perm   190 sec   (2577 perm/sec)   p_kst 3.448980e-04   p_cons 9.820224e-01   p_joint 1.377551e-03

Joint ci ratio: 1.519098e-01	ci left: 1.228958e-03	ci right 1.432891e-03	k: 664	n:500000
Cons ci ratio: 7.507619e-04	ci left: 9.816196e-01	ci right 9.823588e-01	k: 490996	n:500000
KS ci ratio: 2.962720e-01	ci left: 2.982193e-04	ci right 4.037121e-04	k: 174	n:500000
DPY19L1   500000 perm   196 sec   (2551 perm/sec)   p_kst 3.480000e-04   p_cons 9.819920e-01   p_joint 1.328000e-03

Joint ci ratio: 1.505577e-01	ci left: 1.227499e-03	ci right 1.429214e-03	k: 676	n:510000
Cons ci ratio: 7.430725e-04	ci left: 9.816373e-01	ci right 9.823689e-01	k: 500823	n:510000
KS ci ratio: 2.913193e-01	ci left: 3.032698e-04	ci right 4.084252e-04	k: 180	n:510000
DPY19L1   510000 perm   202 sec   (2526 perm/sec)   p_kst 3.529412e-04   p_cons 9.820059e-01   p_joint 1.325490e-03

Joint ci ratio: 1.232873e-01	ci left: 1.820732e-03	ci right 2.061795e-03	k: 1008	n:520000
Cons ci ratio: 7.358945e-04	ci left: 9.816408e-01	ci right 9.823653e-01	k: 510643	n:520000
KS ci ratio: 2.881526e-01	ci left: 3.045711e-04	ci right 4.088206e-04	k: 184	n:520000
DPY19L1   520000 perm   208 sec   (2502 perm/sec)   p_kst 3.538462e-04   p_cons 9.820058e-01   p_joint 1.938462e-03

Joint ci ratio: 1.218462e-01	ci left: 1.830273e-03	ci right 2.069563e-03	k: 1032	n:530000
Cons ci ratio: 7.286482e-04	ci left: 9.816575e-01	ci right 9.823749e-01	k: 520470	n:530000
KS ci ratio: 2.850869e-01	ci left: 3.058292e-04	ci right 4.091952e-04	k: 188	n:530000
DPY19L1   530000 perm   214 sec   (2479 perm/sec)   p_kst 3.547170e-04   p_cons 9.820189e-01   p_joint 1.947170e-03

Joint ci ratio: 1.214368e-01	ci left: 1.808947e-03	ci right 2.044596e-03	k: 1039	n:540000
Cons ci ratio: 7.204747e-04	ci left: 9.817298e-01	ci right 9.824391e-01	k: 530327	n:540000
KS ci ratio: 2.850879e-01	ci left: 3.001655e-04	ci right 4.016177e-04	k: 188	n:540000
DPY19L1   540000 perm   220 sec   (2456 perm/sec)   p_kst 3.481481e-04   p_cons 9.820870e-01   p_joint 1.924074e-03

Joint ci ratio: 1.240973e-01	ci left: 1.698507e-03	ci right 1.924974e-03	k: 995	n:550000
Cons ci ratio: 7.137788e-04	ci left: 9.817388e-01	ci right 9.824416e-01	k: 540151	n:550000
KS ci ratio: 2.828520e-01	ci left: 2.997741e-04	ci right 4.001575e-04	k: 191	n:550000
DPY19L1   550000 perm   226 sec   (2433 perm/sec)   p_kst 3.472727e-04   p_cons 9.820927e-01   p_joint 1.809091e-03

Joint ci ratio: 1.253666e-01	ci left: 1.633573e-03	ci right 1.853775e-03	k: 975	n:560000
Cons ci ratio: 7.081994e-04	ci left: 9.817007e-01	ci right 9.823979e-01	k: 549949	n:560000
KS ci ratio: 2.792391e-01	ci left: 3.027204e-04	ci right 4.025679e-04	k: 196	n:560000
DPY19L1   560000 perm   232 sec   (2410 perm/sec)   p_kst 3.500000e-04   p_cons 9.820518e-01   p_joint 1.741071e-03

Joint ci ratio: 1.238524e-01	ci left: 1.645708e-03	ci right 1.864669e-03	k: 999	n:570000
Cons ci ratio: 7.014879e-04	ci left: 9.817277e-01	ci right 9.824183e-01	k: 559783	n:570000
KS ci ratio: 2.764465e-01	ci left: 3.039382e-04	ci right 4.030105e-04	k: 200	n:570000
DPY19L1   570000 perm   239 sec   (2388 perm/sec)   p_kst 3.508772e-04   p_cons 9.820754e-01   p_joint 1.752632e-03

Joint ci ratio: 1.231775e-01	ci left: 1.635712e-03	ci right 1.852072e-03	k: 1010	n:580000
Cons ci ratio: 6.958139e-04	ci left: 9.817103e-01	ci right 9.823953e-01	k: 569592	n:580000
KS ci ratio: 2.730706e-01	ci left: 3.067248e-04	ci right 4.052751e-04	k: 205	n:580000
DPY19L1   580000 perm   245 sec   (2366 perm/sec)   p_kst 3.534483e-04   p_cons 9.820552e-01   p_joint 1.741379e-03

Joint ci ratio: 1.219766e-01	ci left: 1.640848e-03	ci right 1.855618e-03	k: 1030	n:590000
Cons ci ratio: 6.901088e-04	ci left: 9.817020e-01	ci right 9.823814e-01	k: 579406	n:590000
KS ci ratio: 2.704573e-01	ci left: 3.078439e-04	ci right 4.056464e-04	k: 209	n:590000
DPY19L1   590000 perm   252 sec   (2346 perm/sec)   p_kst 3.542373e-04   p_cons 9.820441e-01   p_joint 1.745763e-03

Joint ci ratio: 1.219784e-01	ci left: 1.613499e-03	ci right 1.824692e-03	k: 1030	n:600000
Cons ci ratio: 6.843475e-04	ci left: 9.817042e-01	ci right 9.823778e-01	k: 589226	n:600000
KS ci ratio: 2.672937e-01	ci left: 3.104849e-04	ci right 4.077793e-04	k: 214	n:600000
DPY19L1   600000 perm   258 sec   (2325 perm/sec)   p_kst 3.566667e-04   p_cons 9.820433e-01   p_joint 1.716667e-03

Joint ci ratio: 1.211589e-01	ci left: 1.609301e-03	ci right 1.818428e-03	k: 1044	n:610000
Cons ci ratio: 6.784757e-04	ci left: 9.817195e-01	ci right 9.823874e-01	k: 599054	n:610000
KS ci ratio: 2.648413e-01	ci left: 3.115150e-04	ci right 4.080881e-04	k: 218	n:610000
DPY19L1   610000 perm   265 sec   (2305 perm/sec)   p_kst 3.573770e-04   p_cons 9.820557e-01   p_joint 1.711475e-03

Joint ci ratio: 1.063753e-01	ci left: 2.069200e-03	ci right 2.303232e-03	k: 1354	n:620000
Cons ci ratio: 6.728446e-04	ci left: 9.817295e-01	ci right 9.823918e-01	k: 608879	n:620000
KS ci ratio: 2.612857e-01	ci left: 3.155300e-04	ci right 4.118200e-04	k: 224	n:620000
DPY19L1   620000 perm   271 sec   (2284 perm/sec)   p_kst 3.612903e-04   p_cons 9.820629e-01   p_joint 2.183871e-03

Joint ci ratio: 1.056375e-01	ci left: 2.065715e-03	ci right 2.297631e-03	k: 1373	n:630000
Cons ci ratio: 6.679826e-04	ci left: 9.817055e-01	ci right 9.823631e-01	k: 618683	n:630000
KS ci ratio: 2.607075e-01	ci left: 3.120050e-04	ci right 4.069742e-04	k: 225	n:630000
DPY19L1   630000 perm   278 sec   (2265 perm/sec)   p_kst 3.571429e-04   p_cons 9.820365e-01   p_joint 2.179365e-03

Joint ci ratio: 1.068542e-01	ci left: 1.986283e-03	ci right 2.212012e-03	k: 1342	n:640000
Cons ci ratio: 6.630472e-04	ci left: 9.816918e-01	ci right 9.823445e-01	k: 628493	n:640000
KS ci ratio: 2.578703e-01	ci left: 3.144347e-04	ci right 4.089343e-04	k: 230	n:640000
DPY19L1   640000 perm   285 sec   (2245 perm/sec)   p_kst 3.593750e-04   p_cons 9.820203e-01   p_joint 2.096875e-03

Joint ci ratio: 1.101513e-01	ci left: 1.837476e-03	ci right 2.053155e-03	k: 1263	n:650000
Cons ci ratio: 6.569286e-04	ci left: 9.817484e-01	ci right 9.823950e-01	k: 638348	n:650000
KS ci ratio: 2.556662e-01	ci left: 3.153551e-04	ci right 4.091920e-04	k: 234	n:650000
DPY19L1   650000 perm   292 sec   (2225 perm/sec)   p_kst 3.600000e-04   p_cons 9.820738e-01   p_joint 1.943077e-03

Joint ci ratio: 1.095897e-01	ci left: 1.828791e-03	ci right 2.042285e-03	k: 1276	n:660000
Cons ci ratio: 6.523178e-04	ci left: 9.817299e-01	ci right 9.823720e-01	k: 648155	n:660000
KS ci ratio: 2.540498e-01	ci left: 3.148321e-04	ci right 4.078273e-04	k: 237	n:660000
DPY19L1   660000 perm   299 sec   (2206 perm/sec)   p_kst 3.590909e-04   p_cons 9.820530e-01   p_joint 1.933333e-03

Joint ci ratio: 1.086156e-01	ci left: 1.834887e-03	ci right 2.047068e-03	k: 1299	n:670000
Cons ci ratio: 6.477744e-04	ci left: 9.817134e-01	ci right 9.823510e-01	k: 657963	n:670000
KS ci ratio: 2.514223e-01	ci left: 3.171232e-04	ci right 4.096746e-04	k: 242	n:670000
DPY19L1   670000 perm   306 sec   (2188 perm/sec)   p_kst 3.611940e-04   p_cons 9.820343e-01   p_joint 1.938806e-03

Joint ci ratio: 1.078715e-01	ci left: 1.833658e-03	ci right 2.044151e-03	k: 1317	n:680000
Cons ci ratio: 6.434312e-04	ci left: 9.816916e-01	ci right 9.823249e-01	k: 667767	n:680000
KS ci ratio: 2.498847e-01	ci left: 3.165943e-04	ci right 4.083384e-04	k: 245	n:680000
DPY19L1   680000 perm   313 sec   (2170 perm/sec)   p_kst 3.602941e-04   p_cons 9.820103e-01   p_joint 1.936765e-03

Joint ci ratio: 1.074248e-01	ci left: 1.822595e-03	ci right 2.030897e-03	k: 1328	n:690000
Cons ci ratio: 6.386229e-04	ci left: 9.817011e-01	ci right 9.823296e-01	k: 677592	n:690000
KS ci ratio: 2.493788e-01	ci left: 3.133645e-04	ci right 4.039603e-04	k: 246	n:690000
DPY19L1   690000 perm   321 sec   (2152 perm/sec)   p_kst 3.565217e-04   p_cons 9.820174e-01   p_joint 1.924638e-03

Joint ci ratio: 1.073454e-01	ci left: 1.799337e-03	ci right 2.004820e-03	k: 1330	n:700000
Cons ci ratio: 6.336386e-04	ci left: 9.817262e-01	ci right 9.823498e-01	k: 687428	n:700000
KS ci ratio: 2.478781e-01	ci left: 3.129066e-04	ci right 4.027416e-04	k: 249	n:700000
DPY19L1   700000 perm   328 sec   (2135 perm/sec)   p_kst 3.557143e-04   p_cons 9.820400e-01   p_joint 1.900000e-03

Joint ci ratio: 1.066269e-01	ci left: 1.798668e-03	ci right 2.002613e-03	k: 1348	n:710000
Cons ci ratio: 6.293461e-04	ci left: 9.817179e-01	ci right 9.823373e-01	k: 697241	n:710000
KS ci ratio: 2.464042e-01	ci left: 3.124631e-04	ci right 4.015557e-04	k: 252	n:710000
DPY19L1   710000 perm   335 sec   (2117 perm/sec)   p_kst 3.549296e-04   p_cons 9.820296e-01   p_joint 1.898592e-03

Joint ci ratio: 1.077545e-01	ci left: 1.735837e-03	ci right 1.934872e-03	k: 1320	n:720000
Cons ci ratio: 6.254589e-04	ci left: 9.816917e-01	ci right 9.823072e-01	k: 707041	n:720000
KS ci ratio: 2.459191e-01	ci left: 3.094265e-04	ci right 3.974530e-04	k: 253	n:720000
DPY19L1   720000 perm   343 sec   (2101 perm/sec)   p_kst 3.513889e-04   p_cons 9.820014e-01   p_joint 1.833333e-03

Joint ci ratio: 1.074305e-01	ci left: 1.722722e-03	ci right 1.919621e-03	k: 1328	n:730000
Cons ci ratio: 6.210399e-04	ci left: 9.817007e-01	ci right 9.823119e-01	k: 716866	n:730000
KS ci ratio: 2.305424e-01	ci left: 3.502751e-04	ci right 4.428060e-04	k: 288	n:730000
DPY19L1   730000 perm   350 sec   (2084 perm/sec)   p_kst 3.945205e-04   p_cons 9.820082e-01   p_joint 1.819178e-03

Joint ci ratio: 1.066706e-01	ci left: 1.724430e-03	ci right 1.920043e-03	k: 1347	n:740000
Cons ci ratio: 6.171140e-04	ci left: 9.816863e-01	ci right 9.822937e-01	k: 726674	n:740000
KS ci ratio: 2.293552e-01	ci left: 3.493622e-04	ci right 4.411094e-04	k: 291	n:740000
DPY19L1   740000 perm   358 sec   (2068 perm/sec)   p_kst 3.932432e-04   p_cons 9.819919e-01   p_joint 1.820270e-03

Joint ci ratio: 1.064349e-01	ci left: 1.709224e-03	ci right 1.902656e-03	k: 1353	n:750000
Cons ci ratio: 6.131919e-04	ci left: 9.816764e-01	ci right 9.822799e-01	k: 736485	n:750000
KS ci ratio: 2.289640e-01	ci left: 3.459607e-04	ci right 4.366377e-04	k: 292	n:750000
DPY19L1   750000 perm   366 sec   (2051 perm/sec)   p_kst 3.893333e-04   p_cons 9.819800e-01   p_joint 1.804000e-03

Joint ci ratio: 1.058892e-01	ci left: 1.704666e-03	ci right 1.896532e-03	k: 1367	n:760000
Cons ci ratio: 6.090490e-04	ci left: 9.816840e-01	ci right 9.822834e-01	k: 746309	n:760000
KS ci ratio: 2.266547e-01	ci left: 3.488529e-04	ci right 4.392369e-04	k: 298	n:760000
DPY19L1   760000 perm   374 sec   (2035 perm/sec)   p_kst 3.921053e-04   p_cons 9.819855e-01   p_joint 1.798684e-03

Joint ci ratio: 1.056585e-01	ci left: 1.690113e-03	ci right 1.879900e-03	k: 1373	n:770000
Cons ci ratio: 6.048778e-04	ci left: 9.816980e-01	ci right 9.822932e-01	k: 756138	n:770000
KS ci ratio: 2.255263e-01	ci left: 3.479978e-04	ci right 4.376490e-04	k: 301	n:770000
DPY19L1   770000 perm   381 sec   (2019 perm/sec)   p_kst 3.909091e-04   p_cons 9.819974e-01   p_joint 1.783117e-03

Joint ci ratio: 1.064386e-01	ci left: 1.643482e-03	ci right 1.829481e-03	k: 1353	n:780000
Cons ci ratio: 6.005729e-04	ci left: 9.817245e-01	ci right 9.823155e-01	k: 765977	n:780000
KS ci ratio: 2.236820e-01	ci left: 3.495859e-04	ci right 4.388083e-04	k: 306	n:780000
DPY19L1   780000 perm   389 sec   (2003 perm/sec)   p_kst 3.923077e-04   p_cons 9.820218e-01   p_joint 1.734615e-03

Joint ci ratio: 1.057767e-01	ci left: 1.643626e-03	ci right 1.828413e-03	k: 1370	n:790000
Cons ci ratio: 5.963575e-04	ci left: 9.817504e-01	ci right 9.823372e-01	k: 775816	n:790000
KS ci ratio: 2.215275e-01	ci left: 3.523323e-04	ci right 4.412714e-04	k: 312	n:790000
DPY19L1   790000 perm   397 sec   (1988 perm/sec)   p_kst 3.949367e-04   p_cons 9.820456e-01   p_joint 1.734177e-03

Joint ci ratio: 1.052409e-01	ci left: 1.640119e-03	ci right 1.823519e-03	k: 1384	n:800000
Cons ci ratio: 5.923968e-04	ci left: 9.817655e-01	ci right 9.823485e-01	k: 785647	n:800000
KS ci ratio: 2.204735e-01	ci left: 3.514706e-04	ci right 4.397128e-04	k: 315	n:800000
DPY19L1   800000 perm   406 sec   (1972 perm/sec)   p_kst 3.937500e-04   p_cons 9.820587e-01   p_joint 1.730000e-03

Joint ci ratio: 1.046758e-01	ci left: 1.637903e-03	ci right 1.820011e-03	k: 1399	n:810000
Cons ci ratio: 5.888849e-04	ci left: 9.817579e-01	ci right 9.823374e-01	k: 795460	n:810000
KS ci ratio: 2.197794e-01	ci left: 3.494644e-04	ci right 4.368894e-04	k: 317	n:810000
DPY19L1   810000 perm   414 sec   (1957 perm/sec)   p_kst 3.913580e-04   p_cons 9.820494e-01   p_joint 1.727160e-03

Joint ci ratio: 1.038626e-01	ci left: 1.644058e-03	ci right 1.825344e-03	k: 1421	n:820000
Cons ci ratio: 5.855763e-04	ci left: 9.817419e-01	ci right 9.823181e-01	k: 805266	n:820000
KS ci ratio: 2.167331e-01	ci left: 3.555785e-04	ci right 4.431359e-04	k: 326	n:820000
DPY19L1   820000 perm   422 sec   (1943 perm/sec)   p_kst 3.975610e-04   p_cons 9.820317e-01   p_joint 1.732927e-03

Joint ci ratio: 1.034998e-01	ci left: 1.635986e-03	ci right 1.815713e-03	k: 1431	n:830000
Cons ci ratio: 5.821633e-04	ci left: 9.817360e-01	ci right 9.823089e-01	k: 815080	n:830000
KS ci ratio: 2.157459e-01	ci left: 3.547131e-04	ci right 4.416069e-04	k: 329	n:830000
DPY19L1   830000 perm   430 sec   (1929 perm/sec)   p_kst 3.963855e-04   p_cons 9.820241e-01   p_joint 1.724096e-03

Joint ci ratio: 1.055127e-01	ci left: 1.553901e-03	ci right 1.728136e-03	k: 1377	n:840000
Cons ci ratio: 5.787117e-04	ci left: 9.817362e-01	ci right 9.823057e-01	k: 824899	n:840000
KS ci ratio: 2.154201e-01	ci left: 3.516164e-04	ci right 4.376044e-04	k: 330	n:840000
DPY19L1   840000 perm   439 sec   (1914 perm/sec)   p_kst 3.928571e-04   p_cons 9.820226e-01   p_joint 1.639286e-03

Joint ci ratio: 1.047550e-01	ci left: 1.558530e-03	ci right 1.731953e-03	k: 1397	n:850000
Cons ci ratio: 5.750715e-04	ci left: 9.817519e-01	ci right 9.823178e-01	k: 834731	n:850000
KS ci ratio: 2.128626e-01	ci left: 3.563869e-04	ci right 4.423717e-04	k: 338	n:850000
DPY19L1   850000 perm   447 sec   (1901 perm/sec)   p_kst 3.976471e-04   p_cons 9.820365e-01   p_joint 1.643529e-03

Joint ci ratio: 1.040870e-01	ci left: 1.560792e-03	ci right 1.733291e-03	k: 1415	n:860000
Cons ci ratio: 5.720075e-04	ci left: 9.817355e-01	ci right 9.822984e-01	k: 844536	n:860000
KS ci ratio: 2.122377e-01	ci left: 3.544446e-04	ci right 4.396771e-04	k: 340	n:860000
DPY19L1   860000 perm   456 sec   (1887 perm/sec)   p_kst 3.953488e-04   p_cons 9.820186e-01   p_joint 1.645349e-03

Joint ci ratio: 1.049829e-01	ci left: 1.515985e-03	ci right 1.685063e-03	k: 1391	n:870000
Cons ci ratio: 5.690654e-04	ci left: 9.817150e-01	ci right 9.822749e-01	k: 854337	n:870000
KS ci ratio: 2.106985e-01	ci left: 3.558134e-04	ci right 4.406744e-04	k: 345	n:870000
DPY19L1   870000 perm   464 sec   (1874 perm/sec)   p_kst 3.965517e-04   p_cons 9.819966e-01   p_joint 1.598851e-03

Joint ci ratio: 1.048707e-01	ci left: 1.502077e-03	ci right 1.669413e-03	k: 1394	n:880000
Cons ci ratio: 5.653490e-04	ci left: 9.817464e-01	ci right 9.823027e-01	k: 864183	n:880000
KS ci ratio: 2.091923e-01	ci left: 3.571532e-04	ci right 4.416468e-04	k: 350	n:880000
DPY19L1   880000 perm   473 sec   (1860 perm/sec)   p_kst 3.977273e-04   p_cons 9.820261e-01   p_joint 1.584091e-03

Joint ci ratio: 1.055943e-01	ci left: 1.464411e-03	ci right 1.628748e-03	k: 1375	n:890000
Cons ci ratio: 5.624904e-04	ci left: 9.817273e-01	ci right 9.822808e-01	k: 873985	n:890000
KS ci ratio: 2.077179e-01	ci left: 3.584649e-04	ci right 4.425952e-04	k: 355	n:890000
DPY19L1   890000 perm   482 sec   (1847 perm/sec)   p_kst 3.988764e-04   p_cons 9.820056e-01   p_joint 1.544944e-03

Joint ci ratio: 1.050613e-01	ci left: 1.463286e-03	ci right 1.626616e-03	k: 1389	n:900000
Cons ci ratio: 5.592872e-04	ci left: 9.817333e-01	ci right 9.822836e-01	k: 883809	n:900000
KS ci ratio: 2.062743e-01	ci left: 3.597496e-04	ci right 4.435206e-04	k: 360	n:900000
DPY19L1   900000 perm   491 sec   (1834 perm/sec)   p_kst 4.000000e-04   p_cons 9.820100e-01   p_joint 1.543333e-03

Joint ci ratio: 1.041654e-01	ci left: 1.472890e-03	ci right 1.635804e-03	k: 1413	n:910000
Cons ci ratio: 5.562592e-04	ci left: 9.817314e-01	ci right 9.822787e-01	k: 893626	n:910000
KS ci ratio: 2.043027e-01	ci left: 3.630933e-04	ci right 4.467339e-04	k: 367	n:910000
DPY19L1   910000 perm   500 sec   (1821 perm/sec)   p_kst 4.032967e-04   p_cons 9.820066e-01   p_joint 1.552747e-03

Joint ci ratio: 1.036536e-01	ci left: 1.471702e-03	ci right 1.633636e-03	k: 1427	n:920000
Cons ci ratio: 5.528202e-04	ci left: 9.817591e-01	ci right 9.823031e-01	k: 903470	n:920000
KS ci ratio: 2.032013e-01	ci left: 3.632726e-04	ci right 4.464474e-04	k: 371	n:920000
DPY19L1   920000 perm   509 sec   (1808 perm/sec)   p_kst 4.032609e-04   p_cons 9.820326e-01   p_joint 1.551087e-03

Joint ci ratio: 1.038733e-01	ci left: 1.449592e-03	ci right 1.609452e-03	k: 1421	n:930000
Cons ci ratio: 5.498788e-04	ci left: 9.817581e-01	ci right 9.822991e-01	k: 913288	n:930000
KS ci ratio: 2.023870e-01	ci left: 3.624285e-04	ci right 4.450363e-04	k: 374	n:930000
DPY19L1   930000 perm   518 sec   (1795 perm/sec)   p_kst 4.021505e-04   p_cons 9.820301e-01   p_joint 1.527957e-03

Joint ci ratio: 1.035102e-01	ci left: 1.444533e-03	ci right 1.603245e-03	k: 1431	n:940000
Cons ci ratio: 5.471157e-04	ci left: 9.817485e-01	ci right 9.822868e-01	k: 923098	n:940000
KS ci ratio: 2.018497e-01	ci left: 3.605928e-04	ci right 4.425371e-04	k: 376	n:940000
DPY19L1   940000 perm   527 sec   (1783 perm/sec)   p_kst 4.000000e-04   p_cons 9.820191e-01   p_joint 1.522340e-03

Joint ci ratio: 1.030080e-01	ci left: 1.443684e-03	ci right 1.601486e-03	k: 1445	n:950000
Cons ci ratio: 5.447828e-04	ci left: 9.817137e-01	ci right 9.822497e-01	k: 932884	n:950000
KS ci ratio: 2.002622e-01	ci left: 3.627950e-04	ci right 4.445121e-04	k: 382	n:950000
DPY19L1   950000 perm   536 sec   (1771 perm/sec)   p_kst 4.021053e-04   p_cons 9.819832e-01   p_joint 1.521053e-03

Joint ci ratio: 1.040591e-01	ci left: 1.399218e-03	ci right 1.553815e-03	k: 1416	n:960000
Cons ci ratio: 5.419670e-04	ci left: 9.817132e-01	ci right 9.822464e-01	k: 942702	n:960000
KS ci ratio: 1.997415e-01	ci left: 3.609948e-04	ci right 4.420693e-04	k: 384	n:960000
DPY19L1   960000 perm   546 sec   (1759 perm/sec)   p_kst 4.000000e-04   p_cons 9.819813e-01   p_joint 1.475000e-03

Joint ci ratio: 1.040967e-01	ci left: 1.383788e-03	ci right 1.536740e-03	k: 1415	n:970000
Cons ci ratio: 5.394770e-04	ci left: 9.816940e-01	ci right 9.822248e-01	k: 952502	n:970000
KS ci ratio: 1.987119e-01	ci left: 3.611912e-04	ci right 4.418411e-04	k: 388	n:970000
DPY19L1   970000 perm   555 sec   (1748 perm/sec)   p_kst 4.000000e-04   p_cons 9.819608e-01   p_joint 1.458763e-03

Joint ci ratio: 1.097105e-01	ci left: 1.229629e-03	ci right 1.373344e-03	k: 1274	n:980000
Cons ci ratio: 5.368659e-04	ci left: 9.816855e-01	ci right 9.822137e-01	k: 962312	n:980000
KS ci ratio: 1.971968e-01	ci left: 3.633247e-04	ci right 4.437579e-04	k: 394	n:980000
DPY19L1   980000 perm   564 sec   (1736 perm/sec)   p_kst 4.020408e-04   p_cons 9.819510e-01   p_joint 1.300000e-03

Joint ci ratio: 9.651115e-02	ci left: 1.583329e-03	ci right 1.744862e-03	k: 1646	n:990000
Cons ci ratio: 5.341856e-04	ci left: 9.816843e-01	ci right 9.822098e-01	k: 972129	n:990000
KS ci ratio: 1.954720e-01	ci left: 3.663779e-04	ci right 4.466933e-04	k: 401	n:990000
DPY19L1   990000 perm   574 sec   (1725 perm/sec)   p_kst 4.050505e-04   p_cons 9.819485e-01   p_joint 1.662626e-03

Joint ci ratio: 9.613268e-02	ci left: 1.580182e-03	ci right 1.740727e-03	k: 1659	n:1000000
Cons ci ratio: 5.312752e-04	ci left: 9.817013e-01	ci right 9.822239e-01	k: 981964	n:1000000
KS ci ratio: 1.947468e-01	ci left: 3.655676e-04	ci right 4.453727e-04	k: 404	n:1000000
DPY19L1   1000000 perm   584 sec   (1713 perm/sec)   p_kst 4.040000e-04   p_cons 9.819640e-01   p_joint 1.659000e-03

Joint ci ratio: 9.564416e-02	ci left: 1.580965e-03	ci right 1.740727e-03	k: 1676	n:1010000
Cons ci ratio: 5.287661e-04	ci left: 9.816940e-01	ci right 9.822142e-01	k: 991775	n:1010000
KS ci ratio: 1.928511e-01	ci left: 3.694847e-04	ci right 4.492676e-04	k: 412	n:1010000
DPY19L1   1010000 perm   593 sec   (1702 perm/sec)   p_kst 4.079208e-04   p_cons 9.819554e-01   p_joint 1.659406e-03

Joint ci ratio: 9.521934e-02	ci left: 1.579820e-03	ci right 1.738718e-03	k: 1691	n:1020000
Cons ci ratio: 5.262921e-04	ci left: 9.816868e-01	ci right 9.822046e-01	k: 1001586	n:1020000
KS ci ratio: 1.914651e-01	ci left: 3.714617e-04	ci right 4.510280e-04	k: 418	n:1020000
DPY19L1   1020000 perm   603 sec   (1691 perm/sec)   p_kst 4.098039e-04   p_cons 9.819471e-01   p_joint 1.657843e-03

Joint ci ratio: 9.477233e-02	ci left: 1.579647e-03	ci right 1.737740e-03	k: 1707	n:1030000
Cons ci ratio: 5.236660e-04	ci left: 9.816925e-01	ci right 9.822077e-01	k: 1011410	n:1030000
KS ci ratio: 1.910100e-01	ci left: 3.697040e-04	ci right 4.486837e-04	k: 420	n:1030000
DPY19L1   1030000 perm   613 sec   (1680 perm/sec)   p_kst 4.077670e-04   p_cons 9.819515e-01   p_joint 1.657282e-03

Joint ci ratio: 9.513642e-02	ci left: 1.552254e-03	ci right 1.708235e-03	k: 1694	n:1040000
Cons ci ratio: 5.213049e-04	ci left: 9.816826e-01	ci right 9.821955e-01	k: 1021218	n:1040000
KS ci ratio: 1.910103e-01	ci left: 3.661491e-04	ci right 4.443696e-04	k: 420	n:1040000
DPY19L1   1040000 perm   623 sec   (1669 perm/sec)   p_kst 4.038462e-04   p_cons 9.819404e-01   p_joint 1.628846e-03

Joint ci ratio: 9.488518e-02	ci left: 1.545838e-03	ci right 1.700742e-03	k: 1703	n:1050000
Cons ci ratio: 5.188221e-04	ci left: 9.816835e-01	ci right 9.821939e-01	k: 1031037	n:1050000
KS ci ratio: 1.898860e-01	ci left: 3.671969e-04	ci right 4.451261e-04	k: 425	n:1050000
DPY19L1   1050000 perm   633 sec   (1659 perm/sec)   p_kst 4.047619e-04   p_cons 9.819400e-01   p_joint 1.621905e-03

Joint ci ratio: 9.455302e-02	ci left: 1.542307e-03	ci right 1.696286e-03	k: 1715	n:1060000
Cons ci ratio: 5.165803e-04	ci left: 9.816701e-01	ci right 9.821782e-01	k: 1040841	n:1060000
KS ci ratio: 1.896638e-01	ci left: 3.646313e-04	ci right 4.419150e-04	k: 426	n:1060000
DPY19L1   1060000 perm   643 sec   (1648 perm/sec)   p_kst 4.018868e-04   p_cons 9.819255e-01   p_joint 1.617925e-03

Joint ci ratio: 9.416975e-02	ci left: 1.540668e-03	ci right 1.693826e-03	k: 1729	n:1070000
Cons ci ratio: 5.142724e-04	ci left: 9.816635e-01	ci right 9.821694e-01	k: 1050652	n:1070000
KS ci ratio: 1.883450e-01	ci left: 3.665657e-04	ci right 4.436574e-04	k: 432	n:1070000
DPY19L1   1070000 perm   653 sec   (1638 perm/sec)   p_kst 4.037383e-04   p_cons 9.819178e-01   p_joint 1.615888e-03

Joint ci ratio: 9.373729e-02	ci left: 1.540869e-03	ci right 1.693305e-03	k: 1745	n:1080000
Cons ci ratio: 5.120216e-04	ci left: 9.816552e-01	ci right 9.821589e-01	k: 1060461	n:1080000
KS ci ratio: 1.876960e-01	ci left: 3.658186e-04	ci right 4.424579e-04	k: 435	n:1080000
DPY19L1   1080000 perm   664 sec   (1627 perm/sec)   p_kst 4.027778e-04   p_cons 9.819083e-01   p_joint 1.615741e-03

Joint ci ratio: 9.339040e-02	ci left: 1.538380e-03	ci right 1.689976e-03	k: 1758	n:1090000
Cons ci ratio: 5.092340e-04	ci left: 9.816868e-01	ci right 9.821877e-01	k: 1070313	n:1090000
KS ci ratio: 1.870536e-01	ci left: 3.650856e-04	ci right 4.412799e-04	k: 438	n:1090000
DPY19L1   1090000 perm   674 sec   (1617 perm/sec)   p_kst 4.018349e-04   p_cons 9.819385e-01   p_joint 1.612844e-03

Joint ci ratio: 9.296854e-02	ci left: 1.538602e-03	ci right 1.689497e-03	k: 1774	n:1100000
Cons ci ratio: 5.071527e-04	ci left: 9.816711e-01	ci right 9.821700e-01	k: 1080114	n:1100000
KS ci ratio: 1.862072e-01	ci left: 3.652331e-04	ci right 4.410743e-04	k: 442	n:1100000
DPY19L1   1100000 perm   684 sec   (1607 perm/sec)   p_kst 4.018182e-04   p_cons 9.819218e-01   p_joint 1.612727e-03

Joint ci ratio: 9.263008e-02	ci left: 1.536180e-03	ci right 1.686260e-03	k: 1787	n:1110000
Cons ci ratio: 5.048914e-04	ci left: 9.816702e-01	ci right 9.821669e-01	k: 1089931	n:1110000
KS ci ratio: 1.851651e-01	ci left: 3.662379e-04	ci right 4.418143e-04	k: 447	n:1110000
DPY19L1   1110000 perm   695 sec   (1598 perm/sec)   p_kst 4.027027e-04   p_cons 9.819198e-01   p_joint 1.609910e-03

Joint ci ratio: 9.224401e-02	ci left: 1.535547e-03	ci right 1.684906e-03	k: 1802	n:1120000
Cons ci ratio: 5.026221e-04	ci left: 9.816721e-01	ci right 9.821665e-01	k: 1099751	n:1120000
KS ci ratio: 1.843440e-01	ci left: 3.663742e-04	ci right 4.416060e-04	k: 451	n:1120000
DPY19L1   1120000 perm   705 sec   (1588 perm/sec)   p_kst 4.026786e-04   p_cons 9.819205e-01   p_joint 1.608929e-03

Joint ci ratio: 1.036686e-01	ci left: 1.198191e-03	ci right 1.330050e-03	k: 1427	n:1130000
Cons ci ratio: 5.000214e-04	ci left: 9.816997e-01	ci right 9.821916e-01	k: 1109600	n:1130000
KS ci ratio: 1.835337e-01	ci left: 3.665088e-04	ci right 4.414006e-04	k: 455	n:1130000
DPY19L1   1130000 perm   716 sec   (1578 perm/sec)   p_kst 4.026549e-04   p_cons 9.819469e-01   p_joint 1.262832e-03

Joint ci ratio: 1.033076e-01	ci left: 1.196225e-03	ci right 1.327382e-03	k: 1437	n:1140000
Cons ci ratio: 4.978292e-04	ci left: 9.817004e-01	ci right 9.821901e-01	k: 1119419	n:1140000
KS ci ratio: 1.831327e-01	ci left: 3.649676e-04	ci right 4.393635e-04	k: 457	n:1140000
DPY19L1   1140000 perm   727 sec   (1569 perm/sec)   p_kst 4.008772e-04   p_cons 9.819465e-01   p_joint 1.260526e-03

Joint ci ratio: 1.034163e-01	ci left: 1.183282e-03	ci right 1.313164e-03	k: 1434	n:1150000
Cons ci ratio: 4.954953e-04	ci left: 9.817133e-01	ci right 9.822007e-01	k: 1129252	n:1150000
KS ci ratio: 1.823382e-01	ci left: 3.651132e-04	ci right 4.391801e-04	k: 461	n:1150000
DPY19L1   1150000 perm   737 sec   (1559 perm/sec)   p_kst 4.008696e-04   p_cons 9.819583e-01   p_joint 1.246957e-03

Joint ci ratio: 1.028798e-01	ci left: 1.185679e-03	ci right 1.315108e-03	k: 1449	n:1160000
Cons ci ratio: 4.933258e-04	ci left: 9.817165e-01	ci right 9.822018e-01	k: 1139074	n:1160000
KS ci ratio: 1.809721e-01	ci left: 3.677258e-04	ci right 4.417026e-04	k: 468	n:1160000
DPY19L1   1160000 perm   748 sec   (1550 perm/sec)   p_kst 4.034483e-04   p_cons 9.819603e-01   p_joint 1.249138e-03

Joint ci ratio: 1.023517e-01	ci left: 1.188036e-03	ci right 1.317017e-03	k: 1464	n:1170000
Cons ci ratio: 4.911490e-04	ci left: 9.817222e-01	ci right 9.822053e-01	k: 1148899	n:1170000
KS ci ratio: 1.803961e-01	ci left: 3.670309e-04	ci right 4.406074e-04	k: 471	n:1170000
DPY19L1   1170000 perm   759 sec   (1541 perm/sec)   p_kst 4.025641e-04   p_cons 9.819650e-01   p_joint 1.251282e-03

Joint ci ratio: 1.019351e-01	ci left: 1.187878e-03	ci right 1.316285e-03	k: 1476	n:1180000
Cons ci ratio: 4.892932e-04	ci left: 9.817065e-01	ci right 9.821878e-01	k: 1158699	n:1180000
KS ci ratio: 1.800153e-01	ci left: 3.655389e-04	ci right 4.386447e-04	k: 473	n:1180000
DPY19L1   1180000 perm   770 sec   (1532 perm/sec)   p_kst 4.008475e-04   p_cons 9.819483e-01   p_joint 1.250847e-03

Joint ci ratio: 1.015235e-01	ci left: 1.187723e-03	ci right 1.315565e-03	k: 1488	n:1190000
Cons ci ratio: 4.870190e-04	ci left: 9.817232e-01	ci right 9.822022e-01	k: 1168537	n:1190000
KS ci ratio: 1.796369e-01	ci left: 3.640722e-04	ci right 4.367149e-04	k: 475	n:1190000
DPY19L1   1190000 perm   781 sec   (1523 perm/sec)   p_kst 3.991597e-04   p_cons 9.819639e-01   p_joint 1.250420e-03

Joint ci ratio: 1.019016e-01	ci left: 1.168891e-03	ci right 1.295202e-03	k: 1477	n:1200000
Cons ci ratio: 4.849928e-04	ci left: 9.817236e-01	ci right 9.822007e-01	k: 1178356	n:1200000
KS ci ratio: 1.792608e-01	ci left: 3.626300e-04	ci right 4.348171e-04	k: 477	n:1200000
DPY19L1   1200000 perm   793 sec   (1512 perm/sec)   p_kst 3.975000e-04   p_cons 9.819633e-01   p_joint 1.230833e-03

Joint ci ratio: 9.472852e-02	ci left: 1.346264e-03	ci right 1.480934e-03	k: 1709	n:1210000
Cons ci ratio: 4.829915e-04	ci left: 9.817241e-01	ci right 9.821992e-01	k: 1188175	n:1210000
KS ci ratio: 1.788871e-01	ci left: 3.612119e-04	ci right 4.329505e-04	k: 479	n:1210000
DPY19L1   1210000 perm   805 sec   (1503 perm/sec)   p_kst 3.958678e-04   p_cons 9.819628e-01   p_joint 1.412397e-03

Joint ci ratio: 9.417914e-02	ci left: 1.351235e-03	ci right 1.485576e-03	k: 1729	n:1220000
Cons ci ratio: 4.810928e-04	ci left: 9.817188e-01	ci right 9.821920e-01	k: 1197987	n:1220000
KS ci ratio: 1.781464e-01	ci left: 3.613833e-04	ci right 4.328268e-04	k: 483	n:1220000
DPY19L1   1220000 perm   816 sec   (1494 perm/sec)   p_kst 3.959016e-04   p_cons 9.819566e-01   p_joint 1.417213e-03

Joint ci ratio: 9.380037e-02	ci left: 1.351364e-03	ci right 1.485147e-03	k: 1743	n:1230000
Cons ci ratio: 4.789964e-04	ci left: 9.817300e-01	ci right 9.822011e-01	k: 1207819	n:1230000
KS ci ratio: 1.772332e-01	ci left: 3.623295e-04	ci right 4.335535e-04	k: 488	n:1230000
DPY19L1   1230000 perm   828 sec   (1485 perm/sec)   p_kst 3.967480e-04   p_cons 9.819667e-01   p_joint 1.417073e-03

Joint ci ratio: 9.334641e-02	ci left: 1.353855e-03	ci right 1.487201e-03	k: 1760	n:1240000
Cons ci ratio: 4.768400e-04	ci left: 9.817474e-01	ci right 9.822165e-01	k: 1217659	n:1240000
KS ci ratio: 1.763339e-01	ci left: 3.632613e-04	ci right 4.342676e-04	k: 493	n:1240000
DPY19L1   1240000 perm   840 sec   (1477 perm/sec)   p_kst 3.975806e-04   p_cons 9.819831e-01   p_joint 1.419355e-03

Joint ci ratio: 9.305634e-02	ci left: 1.351619e-03	ci right 1.484308e-03	k: 1771	n:1250000
Cons ci ratio: 4.748840e-04	ci left: 9.817517e-01	ci right 9.822188e-01	k: 1227483	n:1250000
KS ci ratio: 1.754482e-01	ci left: 3.641792e-04	ci right 4.349693e-04	k: 498	n:1250000
DPY19L1   1250000 perm   851 sec   (1469 perm/sec)   p_kst 3.984000e-04   p_cons 9.819864e-01   p_joint 1.416800e-03

Joint ci ratio: 9.316223e-02	ci left: 1.337791e-03	ci right 1.469280e-03	k: 1767	n:1260000
Cons ci ratio: 4.728351e-04	ci left: 9.817648e-01	ci right 9.822299e-01	k: 1237318	n:1260000
KS ci ratio: 1.749232e-01	ci left: 3.635654e-04	ci right 4.340024e-04	k: 501	n:1260000
DPY19L1   1260000 perm   863 sec   (1460 perm/sec)   p_kst 3.976190e-04   p_cons 9.819984e-01   p_joint 1.402381e-03

Joint ci ratio: 9.295239e-02	ci left: 1.333410e-03	ci right 1.464157e-03	k: 1775	n:1270000
Cons ci ratio: 4.710115e-04	ci left: 9.817625e-01	ci right 9.822258e-01	k: 1247134	n:1270000
KS ci ratio: 1.740585e-01	ci left: 3.644677e-04	ci right 4.346939e-04	k: 506	n:1270000
DPY19L1   1270000 perm   875 sec   (1452 perm/sec)   p_kst 3.984252e-04   p_cons 9.819953e-01   p_joint 1.397638e-03

Joint ci ratio: 9.269194e-02	ci left: 1.330623e-03	ci right 1.460712e-03	k: 1785	n:1280000
Cons ci ratio: 4.691986e-04	ci left: 9.817611e-01	ci right 9.822226e-01	k: 1256951	n:1280000
KS ci ratio: 1.733759e-01	ci left: 3.646095e-04	ci right 4.345586e-04	k: 510	n:1280000
DPY19L1   1280000 perm   887 sec   (1444 perm/sec)   p_kst 3.984375e-04   p_cons 9.819930e-01   p_joint 1.394531e-03

Joint ci ratio: 9.220262e-02	ci left: 1.334697e-03	ci right 1.464458e-03	k: 1804	n:1290000
Cons ci ratio: 4.672425e-04	ci left: 9.817722e-01	ci right 9.822318e-01	k: 1266784	n:1290000
KS ci ratio: 1.725338e-01	ci left: 3.654912e-04	ci right 4.352335e-04	k: 515	n:1290000
DPY19L1   1290000 perm   898 sec   (1436 perm/sec)   p_kst 3.992248e-04   p_cons 9.820031e-01   p_joint 1.398450e-03

Joint ci ratio: 9.184711e-02	ci left: 1.334951e-03	ci right 1.464210e-03	k: 1818	n:1300000
Cons ci ratio: 4.654219e-04	ci left: 9.817746e-01	ci right 9.822324e-01	k: 1276606	n:1300000
KS ci ratio: 1.717038e-01	ci left: 3.663603e-04	ci right 4.358972e-04	k: 520	n:1300000
DPY19L1   1300000 perm   910 sec   (1428 perm/sec)   p_kst 4.000000e-04   p_cons 9.820046e-01   p_joint 1.398462e-03

Joint ci ratio: 9.142080e-02	ci left: 1.337441e-03	ci right 1.466307e-03	k: 1835	n:1310000
Cons ci ratio: 4.635323e-04	ci left: 9.817839e-01	ci right 9.822399e-01	k: 1286437	n:1310000
KS ci ratio: 1.710485e-01	ci left: 3.664861e-04	ci right 4.357540e-04	k: 524	n:1310000
DPY19L1   1310000 perm   922 sec   (1420 perm/sec)   p_kst 4.000000e-04   p_cons 9.820130e-01   p_joint 1.400763e-03

Joint ci ratio: 9.109889e-02	ci left: 1.336932e-03	ci right 1.465271e-03	k: 1848	n:1320000
Cons ci ratio: 4.617051e-04	ci left: 9.817900e-01	ci right 9.822442e-01	k: 1296264	n:1320000
KS ci ratio: 1.708860e-01	ci left: 3.644348e-04	ci right 4.332428e-04	k: 525	n:1320000
DPY19L1   1320000 perm   935 sec   (1412 perm/sec)   p_kst 3.977273e-04   p_cons 9.820182e-01   p_joint 1.400000e-03

Joint ci ratio: 9.095171e-02	ci left: 1.331288e-03	ci right 1.458869e-03	k: 1854	n:1330000
Cons ci ratio: 4.601244e-04	ci left: 9.817787e-01	ci right 9.822313e-01	k: 1306068	n:1330000
KS ci ratio: 1.699195e-01	ci left: 3.660136e-04	ci right 4.346888e-04	k: 531	n:1330000
DPY19L1   1330000 perm   948 sec   (1404 perm/sec)   p_kst 3.992481e-04   p_cons 9.820060e-01   p_joint 1.393985e-03

Joint ci ratio: 9.097674e-02	ci left: 1.320624e-03	ci right 1.447219e-03	k: 1853	n:1340000
Cons ci ratio: 4.583177e-04	ci left: 9.817862e-01	ci right 9.822370e-01	k: 1315897	n:1340000
KS ci ratio: 1.689692e-01	ci left: 3.675699e-04	ci right 4.361122e-04	k: 537	n:1340000
DPY19L1   1340000 perm   959 sec   (1397 perm/sec)   p_kst 4.007463e-04   p_cons 9.820127e-01   p_joint 1.382836e-03

Joint ci ratio: 9.090359e-02	ci left: 1.313013e-03	ci right 1.438771e-03	k: 1856	n:1350000
Cons ci ratio: 4.566948e-04	ci left: 9.817810e-01	ci right 9.822302e-01	k: 1325709	n:1350000
KS ci ratio: 1.685001e-01	ci left: 3.669755e-04	ci right 4.351977e-04	k: 540	n:1350000
DPY19L1   1350000 perm   971 sec   (1390 perm/sec)   p_kst 4.000000e-04   p_cons 9.820067e-01   p_joint 1.374815e-03

Joint ci ratio: 9.147306e-02	ci left: 1.286832e-03	ci right 1.410896e-03	k: 1833	n:1360000
Cons ci ratio: 4.550038e-04	ci left: 9.817826e-01	ci right 9.822301e-01	k: 1335530	n:1360000
KS ci ratio: 1.675733e-01	ci left: 3.685034e-04	ci right 4.365948e-04	k: 546	n:1360000
DPY19L1   1360000 perm   983 sec   (1383 perm/sec)   p_kst 4.014706e-04   p_cons 9.820074e-01   p_joint 1.347794e-03

Joint ci ratio: 9.092903e-02	ci left: 1.293131e-03	ci right 1.417022e-03	k: 1855	n:1370000
Cons ci ratio: 4.533501e-04	ci left: 9.817826e-01	ci right 9.822285e-01	k: 1345349	n:1370000
KS ci ratio: 1.668126e-01	ci left: 3.693106e-04	ci right 4.372102e-04	k: 551	n:1370000
DPY19L1   1370000 perm   996 sec   (1376 perm/sec)   p_kst 4.021898e-04   p_cons 9.820066e-01   p_joint 1.354015e-03

Joint ci ratio: 9.078266e-02	ci left: 1.288009e-03	ci right 1.411200e-03	k: 1861	n:1380000
Cons ci ratio: 4.517514e-04	ci left: 9.817797e-01	ci right 9.822241e-01	k: 1355164	n:1380000
KS ci ratio: 1.666619e-01	ci left: 3.673288e-04	ci right 4.347969e-04	k: 552	n:1380000
DPY19L1   1380000 perm   1008 sec   (1369 perm/sec)   p_kst 4.000000e-04   p_cons 9.820029e-01   p_joint 1.348551e-03

Joint ci ratio: 9.037094e-02	ci left: 1.290696e-03	ci right 1.413555e-03	k: 1878	n:1390000
Cons ci ratio: 4.500687e-04	ci left: 9.817849e-01	ci right 9.822275e-01	k: 1364990	n:1390000
KS ci ratio: 1.659135e-01	ci left: 3.681336e-04	ci right 4.354155e-04	k: 557	n:1390000
DPY19L1   1390000 perm   1021 sec   (1362 perm/sec)   p_kst 4.007194e-04   p_cons 9.820072e-01   p_joint 1.351079e-03

Joint ci ratio: 9.054041e-02	ci left: 1.276590e-03	ci right 1.398345e-03	k: 1871	n:1400000
Cons ci ratio: 4.483775e-04	ci left: 9.817921e-01	ci right 9.822331e-01	k: 1374819	n:1400000
KS ci ratio: 1.654693e-01	ci left: 3.675580e-04	ci right 4.345371e-04	k: 560	n:1400000
DPY19L1   1400000 perm   1033 sec   (1355 perm/sec)   p_kst 4.000000e-04   p_cons 9.820136e-01   p_joint 1.336429e-03

Joint ci ratio: 8.790027e-02	ci left: 1.346585e-03	ci right 1.471080e-03	k: 1985	n:1410000
Cons ci ratio: 4.468665e-04	ci left: 9.817863e-01	ci right 9.822259e-01	k: 1384630	n:1410000
KS ci ratio: 1.644464e-01	ci left: 3.697109e-04	ci right 4.366245e-04	k: 567	n:1410000
DPY19L1   1410000 perm   1046 sec   (1348 perm/sec)   p_kst 4.021277e-04   p_cons 9.820071e-01   p_joint 1.407801e-03

Joint ci ratio: 8.752637e-02	ci left: 1.348812e-03	ci right 1.472954e-03	k: 2002	n:1420000
Cons ci ratio: 4.453618e-04	ci left: 9.817814e-01	ci right 9.822194e-01	k: 1394442	n:1420000
KS ci ratio: 1.640139e-01	ci left: 3.691331e-04	ci right 4.357491e-04	k: 570	n:1420000
DPY19L1   1420000 perm   1059 sec   (1341 perm/sec)   p_kst 4.014085e-04   p_cons 9.820014e-01   p_joint 1.409859e-03

Joint ci ratio: 8.724375e-02	ci left: 1.348272e-03	ci right 1.471944e-03	k: 2015	n:1430000
Cons ci ratio: 4.438458e-04	ci left: 9.817787e-01	ci right 9.822152e-01	k: 1404257	n:1430000
KS ci ratio: 1.637275e-01	ci left: 3.678930e-04	ci right 4.341578e-04	k: 572	n:1430000
DPY19L1   1430000 perm   1072 sec   (1334 perm/sec)   p_kst 4.000000e-04   p_cons 9.819979e-01   p_joint 1.409091e-03

Joint ci ratio: 8.741804e-02	ci left: 1.333474e-03	ci right 1.456045e-03	k: 2007	n:1440000
Cons ci ratio: 4.423452e-04	ci left: 9.817759e-01	ci right 9.822110e-01	k: 1414072	n:1440000
KS ci ratio: 1.634426e-01	ci left: 3.666702e-04	ci right 4.325886e-04	k: 574	n:1440000
DPY19L1   1440000 perm   1085 sec   (1327 perm/sec)   p_kst 3.986111e-04   p_cons 9.819944e-01   p_joint 1.393750e-03

Joint ci ratio: 8.709331e-02	ci left: 1.334397e-03	ci right 1.456574e-03	k: 2022	n:1450000
Cons ci ratio: 4.407995e-04	ci left: 9.817781e-01	ci right 9.822117e-01	k: 1423894	n:1450000
KS ci ratio: 1.628771e-01	ci left: 3.667874e-04	ci right 4.324764e-04	k: 578	n:1450000
DPY19L1   1450000 perm   1098 sec   (1320 perm/sec)   p_kst 3.986207e-04   p_cons 9.819959e-01   p_joint 1.394483e-03

Joint ci ratio: 8.679351e-02	ci left: 1.334638e-03	ci right 1.456395e-03	k: 2036	n:1460000
Cons ci ratio: 4.392529e-04	ci left: 9.817817e-01	ci right 9.822137e-01	k: 1433718	n:1460000
KS ci ratio: 1.623173e-01	ci left: 3.669034e-04	ci right 4.323653e-04	k: 582	n:1460000
DPY19L1   1460000 perm   1111 sec   (1314 perm/sec)   p_kst 3.986301e-04   p_cons 9.819986e-01   p_joint 1.394521e-03

Joint ci ratio: 8.639139e-02	ci left: 1.338204e-03	ci right 1.459692e-03	k: 2055	n:1470000
Cons ci ratio: 4.378067e-04	ci left: 9.817783e-01	ci right 9.822089e-01	k: 1443532	n:1470000
KS ci ratio: 1.614884e-01	ci left: 3.683238e-04	ci right 4.336709e-04	k: 588	n:1470000
DPY19L1   1470000 perm   1124 sec   (1308 perm/sec)   p_kst 4.000000e-04   p_cons 9.819946e-01   p_joint 1.397959e-03

Joint ci ratio: 8.702995e-02	ci left: 1.309330e-03	ci right 1.429121e-03	k: 2025	n:1480000
Cons ci ratio: 4.364996e-04	ci left: 9.817648e-01	ci right 9.821941e-01	k: 1453331	n:1480000
KS ci ratio: 1.610787e-01	ci left: 3.677803e-04	ci right 4.328495e-04	k: 591	n:1480000
DPY19L1   1480000 perm   1137 sec   (1301 perm/sec)   p_kst 3.993243e-04   p_cons 9.819804e-01   p_joint 1.368243e-03

Joint ci ratio: 8.675209e-02	ci left: 1.309078e-03	ci right 1.428444e-03	k: 2038	n:1490000
Cons ci ratio: 4.352204e-04	ci left: 9.817501e-01	ci right 9.821782e-01	k: 1463128	n:1490000
KS ci ratio: 1.606722e-01	ci left: 3.672443e-04	ci right 4.320389e-04	k: 594	n:1490000
DPY19L1   1490000 perm   1150 sec   (1295 perm/sec)   p_kst 3.986577e-04   p_cons 9.819651e-01   p_joint 1.367785e-03

Joint ci ratio: 8.641364e-02	ci left: 1.310787e-03	ci right 1.429818e-03	k: 2054	n:1500000
Cons ci ratio: 4.337889e-04	ci left: 9.817491e-01	ci right 9.821757e-01	k: 1472945	n:1500000
KS ci ratio: 1.600013e-01	ci left: 3.679956e-04	ci right 4.326256e-04	k: 599	n:1500000
DPY19L1   1500000 perm   1164 sec   (1289 perm/sec)   p_kst 3.993333e-04   p_cons 9.819633e-01   p_joint 1.369333e-03

Joint ci ratio: 8.616249e-02	ci left: 1.309882e-03	ci right 1.428468e-03	k: 2066	n:1510000
Cons ci ratio: 4.322339e-04	ci left: 9.817594e-01	ci right 9.821845e-01	k: 1482779	n:1510000
KS ci ratio: 1.594706e-01	ci left: 3.681017e-04	ci right 4.325153e-04	k: 603	n:1510000
DPY19L1   1510000 perm   1177 sec   (1283 perm/sec)   p_kst 3.993377e-04   p_cons 9.819728e-01   p_joint 1.368212e-03

Joint ci ratio: 8.630935e-02	ci left: 1.296758e-03	ci right 1.414366e-03	k: 2059	n:1520000
Cons ci ratio: 4.306714e-04	ci left: 9.817715e-01	ci right 9.821951e-01	k: 1492616	n:1520000
KS ci ratio: 1.593389e-01	ci left: 3.663116e-04	ci right 4.303539e-04	k: 604	n:1520000
DPY19L1   1520000 perm   1191 sec   (1277 perm/sec)   p_kst 3.973684e-04   p_cons 9.819842e-01   p_joint 1.354605e-03

Joint ci ratio: 8.614240e-02	ci left: 1.293398e-03	ci right 1.410463e-03	k: 2067	n:1530000
Cons ci ratio: 4.291097e-04	ci left: 9.817848e-01	ci right 9.822068e-01	k: 1502455	n:1530000
KS ci ratio: 1.590763e-01	ci left: 3.651725e-04	ci right 4.289004e-04	k: 606	n:1530000
DPY19L1   1530000 perm   1204 sec   (1271 perm/sec)   p_kst 3.960784e-04   p_cons 9.819967e-01   p_joint 1.350980e-03

Joint ci ratio: 8.581101e-02	ci left: 1.295166e-03	ci right 1.411917e-03	k: 2083	n:1540000
Cons ci ratio: 4.277767e-04	ci left: 9.817803e-01	ci right 9.822010e-01	k: 1512267	n:1540000
KS ci ratio: 1.580380e-01	ci left: 3.677900e-04	ci right 4.315161e-04	k: 614	n:1540000
DPY19L1   1540000 perm   1218 sec   (1265 perm/sec)   p_kst 3.987013e-04   p_cons 9.819916e-01   p_joint 1.352597e-03

Joint ci ratio: 8.564693e-02	ci left: 1.291860e-03	ci right 1.408080e-03	k: 2091	n:1550000
Cons ci ratio: 4.264950e-04	ci left: 9.817726e-01	ci right 9.821920e-01	k: 1522074	n:1550000
KS ci ratio: 1.579099e-01	ci left: 3.660368e-04	ci right 4.294028e-04	k: 615	n:1550000
DPY19L1   1550000 perm   1231 sec   (1259 perm/sec)   p_kst 3.967742e-04   p_cons 9.819832e-01   p_joint 1.349032e-03

Joint ci ratio: 8.538207e-02	ci left: 1.291734e-03	ci right 1.407566e-03	k: 2104	n:1560000
Cons ci ratio: 4.251014e-04	ci left: 9.817753e-01	ci right 9.821934e-01	k: 1531897	n:1560000
KS ci ratio: 1.568942e-01	ci left: 3.686166e-04	ci right 4.319802e-04	k: 623	n:1560000
DPY19L1   1560000 perm   1245 sec   (1253 perm/sec)   p_kst 3.993590e-04   p_cons 9.819853e-01   p_joint 1.348718e-03

Joint ci ratio: 8.503927e-02	ci left: 1.294104e-03	ci right 1.409659e-03	k: 2121	n:1570000
Cons ci ratio: 4.237595e-04	ci left: 9.817748e-01	ci right 9.821916e-01	k: 1541715	n:1570000
KS ci ratio: 1.560213e-01	ci left: 3.705528e-04	ci right 4.338617e-04	k: 630	n:1570000
DPY19L1   1570000 perm   1259 sec   (1247 perm/sec)   p_kst 4.012739e-04   p_cons 9.819841e-01   p_joint 1.350955e-03

Joint ci ratio: 8.462138e-02	ci left: 1.298923e-03	ci right 1.414310e-03	k: 2142	n:1580000
Cons ci ratio: 4.224528e-04	ci left: 9.817724e-01	ci right 9.821879e-01	k: 1551530	n:1580000
KS ci ratio: 1.551629e-01	ci left: 3.724655e-04	ci right 4.357184e-04	k: 637	n:1580000
DPY19L1   1580000 perm   1273 sec   (1241 perm/sec)   p_kst 4.031646e-04   p_cons 9.819810e-01   p_joint 1.355696e-03

Joint ci ratio: 8.434631e-02	ci left: 1.299372e-03	ci right 1.414406e-03	k: 2156	n:1590000
Cons ci ratio: 4.213602e-04	ci left: 9.817529e-01	ci right 9.821673e-01	k: 1561318	n:1590000
KS ci ratio: 1.549204e-01	ci left: 3.713320e-04	ci right 4.342847e-04	k: 639	n:1590000
DPY19L1   1590000 perm   1287 sec   (1235 perm/sec)   p_kst 4.018868e-04   p_cons 9.819610e-01   p_joint 1.355975e-03

Joint ci ratio: 8.409329e-02	ci left: 1.299205e-03	ci right 1.413862e-03	k: 2169	n:1600000
Cons ci ratio: 4.201052e-04	ci left: 9.817482e-01	ci right 9.821613e-01	k: 1571129	n:1600000
KS ci ratio: 1.544385e-01	ci left: 3.714144e-04	ci right 4.341671e-04	k: 643	n:1600000
DPY19L1   1600000 perm   1301 sec   (1229 perm/sec)   p_kst 4.018750e-04   p_cons 9.819556e-01   p_joint 1.355625e-03

Joint ci ratio: 8.391957e-02	ci left: 1.296608e-03	ci right 1.410788e-03	k: 2178	n:1610000
Cons ci ratio: 4.187805e-04	ci left: 9.817504e-01	ci right 9.821622e-01	k: 1580951	n:1610000
KS ci ratio: 1.538424e-01	ci left: 3.720933e-04	ci right 4.346957e-04	k: 648	n:1610000
DPY19L1   1610000 perm   1316 sec   (1224 perm/sec)   p_kst 4.024845e-04   p_cons 9.819571e-01   p_joint 1.352795e-03

Joint ci ratio: 8.468218e-02	ci left: 1.265037e-03	ci right 1.377499e-03	k: 2139	n:1620000
Cons ci ratio: 4.175264e-04	ci left: 9.817475e-01	ci right 9.821581e-01	k: 1590765	n:1620000
KS ci ratio: 1.533705e-01	ci left: 3.721706e-04	ci right 4.345763e-04	k: 652	n:1620000
DPY19L1   1620000 perm   1330 sec   (1218 perm/sec)   p_kst 4.024691e-04   p_cons 9.819537e-01   p_joint 1.320370e-03

Joint ci ratio: 8.544553e-02	ci left: 1.234458e-03	ci right 1.345240e-03	k: 2101	n:1630000
Cons ci ratio: 4.161899e-04	ci left: 9.817528e-01	ci right 9.821621e-01	k: 1600592	n:1630000
KS ci ratio: 1.527866e-01	ci left: 3.728374e-04	ci right 4.350951e-04	k: 657	n:1630000
DPY19L1   1630000 perm   1345 sec   (1212 perm/sec)   p_kst 4.030675e-04   p_cons 9.819583e-01   p_joint 1.288957e-03

Joint ci ratio: 8.522288e-02	ci left: 1.233495e-03	ci right 1.343888e-03	k: 2112	n:1640000
Cons ci ratio: 4.148804e-04	ci left: 9.817567e-01	ci right 9.821647e-01	k: 1610417	n:1640000
KS ci ratio: 1.522094e-01	ci left: 3.734964e-04	ci right 4.356071e-04	k: 662	n:1640000
DPY19L1   1640000 perm   1359 sec   (1207 perm/sec)   p_kst 4.036585e-04   p_cons 9.819616e-01   p_joint 1.287805e-03

Joint ci ratio: 8.492194e-02	ci left: 1.234917e-03	ci right 1.345027e-03	k: 2127	n:1650000
Cons ci ratio: 4.137671e-04	ci left: 9.817448e-01	ci right 9.821517e-01	k: 1620216	n:1650000
KS ci ratio: 1.517523e-01	ci left: 3.735649e-04	ci right 4.354834e-04	k: 666	n:1650000
DPY19L1   1650000 perm   1373 sec   (1202 perm/sec)   p_kst 4.036364e-04   p_cons 9.819491e-01   p_joint 1.289091e-03

Joint ci ratio: 8.462415e-02	ci left: 1.236322e-03	ci right 1.346152e-03	k: 2142	n:1660000
Cons ci ratio: 4.126555e-04	ci left: 9.817336e-01	ci right 9.821394e-01	k: 1630016	n:1660000
KS ci ratio: 1.511866e-01	ci left: 3.742124e-04	ci right 4.359861e-04	k: 671	n:1660000
DPY19L1   1660000 perm   1387 sec   (1197 perm/sec)   p_kst 4.042169e-04   p_cons 9.819373e-01   p_joint 1.290361e-03

Joint ci ratio: 8.434905e-02	ci left: 1.237125e-03	ci right 1.346652e-03	k: 2156	n:1670000
Cons ci ratio: 4.114554e-04	ci left: 9.817310e-01	ci right 9.821356e-01	k: 1639830	n:1670000
KS ci ratio: 1.507387e-01	ci left: 3.742763e-04	ci right 4.358611e-04	k: 675	n:1670000
DPY19L1   1670000 perm   1402 sec   (1191 perm/sec)   p_kst 4.041916e-04   p_cons 9.819341e-01   p_joint 1.291018e-03

Joint ci ratio: 8.415428e-02	ci left: 1.235588e-03	ci right 1.344714e-03	k: 2166	n:1680000
Cons ci ratio: 4.100936e-04	ci left: 9.817434e-01	ci right 9.821466e-01	k: 1649669	n:1680000
KS ci ratio: 1.502947e-01	ci left: 3.743398e-04	ci right 4.357372e-04	k: 679	n:1680000
DPY19L1   1680000 perm   1417 sec   (1186 perm/sec)   p_kst 4.041667e-04   p_cons 9.819458e-01   p_joint 1.289286e-03

Joint ci ratio: 8.401883e-02	ci left: 1.232332e-03	ci right 1.340986e-03	k: 2173	n:1690000
Cons ci ratio: 4.089021e-04	ci left: 9.817419e-01	ci right 9.821440e-01	k: 1659485	n:1690000
KS ci ratio: 1.498546e-01	ci left: 3.744027e-04	ci right 4.356146e-04	k: 683	n:1690000
DPY19L1   1690000 perm   1431 sec   (1181 perm/sec)   p_kst 4.041420e-04   p_cons 9.819438e-01   p_joint 1.285799e-03

Joint ci ratio: 8.470463e-02	ci left: 1.204929e-03	ci right 1.312076e-03	k: 2138	n:1700000
Cons ci ratio: 4.076938e-04	ci left: 9.817428e-01	ci right 9.821438e-01	k: 1669305	n:1700000
KS ci ratio: 1.493098e-01	ci left: 3.750315e-04	ci right 4.361033e-04	k: 688	n:1700000
DPY19L1   1700000 perm   1446 sec   (1175 perm/sec)   p_kst 4.047059e-04   p_cons 9.819441e-01   p_joint 1.257647e-03

Joint ci ratio: 8.444839e-02	ci left: 1.205324e-03	ci right 1.312166e-03	k: 2151	n:1710000
Cons ci ratio: 4.064091e-04	ci left: 9.817514e-01	ci right 9.821511e-01	k: 1679138	n:1710000
KS ci ratio: 1.487709e-01	ci left: 3.756533e-04	ci right 4.365859e-04	k: 693	n:1710000
DPY19L1   1710000 perm   1461 sec   (1170 perm/sec)   p_kst 4.052632e-04   p_cons 9.819520e-01   p_joint 1.257895e-03

Joint ci ratio: 7.943226e-02	ci left: 1.357778e-03	ci right 1.470655e-03	k: 2431	n:1720000
Cons ci ratio: 4.052160e-04	ci left: 9.817529e-01	ci right 9.821513e-01	k: 1688959	n:1720000
KS ci ratio: 1.482378e-01	ci left: 3.762682e-04	ci right 4.370625e-04	k: 698	n:1720000
DPY19L1   1720000 perm   1476 sec   (1165 perm/sec)   p_kst 4.058140e-04   p_cons 9.819529e-01   p_joint 1.413372e-03

Joint ci ratio: 7.930207e-02	ci left: 1.354462e-03	ci right 1.466871e-03	k: 2439	n:1730000
Cons ci ratio: 4.039873e-04	ci left: 9.817584e-01	ci right 9.821556e-01	k: 1698787	n:1730000
KS ci ratio: 1.477105e-01	ci left: 3.768764e-04	ci right 4.375332e-04	k: 703	n:1730000
DPY19L1   1730000 perm   1492 sec   (1160 perm/sec)   p_kst 4.063584e-04   p_cons 9.819578e-01   p_joint 1.409827e-03

Joint ci ratio: 7.904330e-02	ci left: 1.355691e-03	ci right 1.467818e-03	k: 2455	n:1740000
Cons ci ratio: 4.027305e-04	ci left: 9.817673e-01	ci right 9.821633e-01	k: 1708621	n:1740000
KS ci ratio: 1.473968e-01	ci left: 3.763709e-04	ci right 4.368064e-04	k: 706	n:1740000
DPY19L1   1740000 perm   1507 sec   (1155 perm/sec)   p_kst 4.057471e-04   p_cons 9.819661e-01   p_joint 1.410920e-03

Joint ci ratio: 8.033129e-02	ci left: 1.304260e-03	ci right 1.413972e-03	k: 2377	n:1750000
Cons ci ratio: 4.017120e-04	ci left: 9.817560e-01	ci right 9.821510e-01	k: 1718420	n:1750000
KS ci ratio: 1.470851e-01	ci left: 3.758714e-04	ci right 4.360878e-04	k: 709	n:1750000
DPY19L1   1750000 perm   1522 sec   (1149 perm/sec)   p_kst 4.051429e-04   p_cons 9.819543e-01   p_joint 1.358286e-03

Joint ci ratio: 8.021347e-02	ci left: 1.300747e-03	ci right 1.409996e-03	k: 2384	n:1760000
Cons ci ratio: 4.005341e-04	ci left: 9.817597e-01	ci right 9.821535e-01	k: 1728245	n:1760000
KS ci ratio: 1.468785e-01	ci left: 3.748303e-04	ci right 4.347882e-04	k: 711	n:1760000
DPY19L1   1760000 perm   1538 sec   (1144 perm/sec)   p_kst 4.039773e-04   p_cons 9.819574e-01   p_joint 1.354545e-03

Joint ci ratio: 8.001247e-02	ci left: 1.300042e-03	ci right 1.408945e-03	k: 2396	n:1770000
Cons ci ratio: 3.993601e-04	ci left: 9.817639e-01	ci right 9.821566e-01	k: 1738071	n:1770000
KS ci ratio: 1.464676e-01	ci left: 3.748896e-04	ci right 4.346745e-04	k: 715	n:1770000
DPY19L1   1770000 perm   1553 sec   (1139 perm/sec)   p_kst 4.039548e-04   p_cons 9.819610e-01   p_joint 1.353672e-03

Joint ci ratio: 8.822502e-02	ci left: 1.058978e-03	ci right 1.157263e-03	k: 1971	n:1780000
Cons ci ratio: 3.981016e-04	ci left: 9.817765e-01	ci right 9.821680e-01	k: 1747912	n:1780000
KS ci ratio: 1.505180e-01	ci left: 3.522278e-04	ci right 4.100921e-04	k: 677	n:1780000
DPY19L1   1780000 perm   1569 sec   (1135 perm/sec)   p_kst 3.803371e-04   p_cons 9.819730e-01   p_joint 1.107303e-03

Joint ci ratio: 8.802444e-02	ci left: 1.057979e-03	ci right 1.155937e-03	k: 1980	n:1790000
Cons ci ratio: 3.969487e-04	ci left: 9.817806e-01	ci right 9.821709e-01	k: 1757738	n:1790000
KS ci ratio: 1.501861e-01	ci left: 3.518730e-04	ci right 4.095401e-04	k: 680	n:1790000
DPY19L1   1790000 perm   1585 sec   (1130 perm/sec)   p_kst 3.798883e-04   p_cons 9.819765e-01   p_joint 1.106145e-03

Joint ci ratio: 8.775901e-02	ci left: 1.058622e-03	ci right 1.156328e-03	k: 1992	n:1800000
Cons ci ratio: 3.959176e-04	ci left: 9.817746e-01	ci right 9.821639e-01	k: 1767546	n:1800000
KS ci ratio: 1.490952e-01	ci left: 3.552658e-04	ci right 4.130282e-04	k: 690	n:1800000
DPY19L1   1800000 perm   1600 sec   (1125 perm/sec)   p_kst 3.833333e-04   p_cons 9.819700e-01   p_joint 1.106667e-03

Joint ci ratio: 8.773725e-02	ci left: 1.053313e-03	ci right 1.150504e-03	k: 1993	n:1810000
Cons ci ratio: 3.947712e-04	ci left: 9.817797e-01	ci right 9.821679e-01	k: 1777374	n:1810000
KS ci ratio: 1.485586e-01	ci left: 3.559625e-04	ci right 4.136115e-04	k: 695	n:1810000
DPY19L1   1810000 perm   1616 sec   (1120 perm/sec)   p_kst 3.839779e-04   p_cons 9.819746e-01   p_joint 1.101105e-03

Joint ci ratio: 8.753996e-02	ci left: 1.052363e-03	ci right 1.149236e-03	k: 2002	n:1820000
Cons ci ratio: 3.936530e-04	ci left: 9.817832e-01	ci right 9.821703e-01	k: 1787199	n:1820000
KS ci ratio: 1.483457e-01	ci left: 3.550648e-04	ci right 4.124786e-04	k: 697	n:1820000
DPY19L1   1820000 perm   1632 sec   (1115 perm/sec)   p_kst 3.829670e-04   p_cons 9.819775e-01   p_joint 1.100000e-03

Joint ci ratio: 8.736574e-02	ci left: 1.050888e-03	ci right 1.147423e-03	k: 2010	n:1830000
Cons ci ratio: 3.926837e-04	ci left: 9.817739e-01	ci right 9.821601e-01	k: 1797001	n:1830000
KS ci ratio: 1.481337e-01	ci left: 3.541769e-04	ci right 4.113581e-04	k: 699	n:1830000
DPY19L1   1830000 perm   1648 sec   (1110 perm/sec)   p_kst 3.819672e-04   p_cons 9.819678e-01   p_joint 1.098361e-03

Joint ci ratio: 8.712777e-02	ci left: 1.051024e-03	ci right 1.147296e-03	k: 2021	n:1840000
Cons ci ratio: 3.915471e-04	ci left: 9.817806e-01	ci right 9.821657e-01	k: 1806832	n:1840000
KS ci ratio: 1.479226e-01	ci left: 3.532987e-04	ci right 4.102496e-04	k: 701	n:1840000
DPY19L1   1840000 perm   1664 sec   (1106 perm/sec)   p_kst 3.809783e-04   p_cons 9.819739e-01   p_joint 1.098370e-03

Joint ci ratio: 8.684899e-02	ci left: 1.052217e-03	ci right 1.148274e-03	k: 2034	n:1850000
Cons ci ratio: 3.904262e-04	ci left: 9.817867e-01	ci right 9.821707e-01	k: 1816662	n:1850000
KS ci ratio: 1.472944e-01	ci left: 3.545124e-04	ci right 4.113950e-04	k: 707	n:1850000
DPY19L1   1850000 perm   1680 sec   (1101 perm/sec)   p_kst 3.821622e-04   p_cons 9.819795e-01   p_joint 1.099459e-03

Joint ci ratio: 8.667885e-02	ci left: 1.050768e-03	ci right 1.146495e-03	k: 2042	n:1860000
Cons ci ratio: 3.893917e-04	ci left: 9.817858e-01	ci right 9.821687e-01	k: 1826479	n:1860000
KS ci ratio: 1.468801e-01	ci left: 3.546779e-04	ci right 4.114128e-04	k: 711	n:1860000
DPY19L1   1860000 perm   1697 sec   (1096 perm/sec)   p_kst 3.822581e-04   p_cons 9.819780e-01   p_joint 1.097849e-03

Joint ci ratio: 8.640433e-02	ci left: 1.051950e-03	ci right 1.147466e-03	k: 2055	n:1870000
Cons ci ratio: 3.881660e-04	ci left: 9.818031e-01	ci right 9.821848e-01	k: 1836330	n:1870000
KS ci ratio: 1.465716e-01	ci left: 3.543266e-04	ci right 4.108759e-04	k: 714	n:1870000
DPY19L1   1870000 perm   1713 sec   (1092 perm/sec)   p_kst 3.818182e-04   p_cons 9.819947e-01   p_joint 1.098930e-03

Joint ci ratio: 8.606996e-02	ci left: 1.054682e-03	ci right 1.150057e-03	k: 2071	n:1880000
Cons ci ratio: 3.870154e-04	ci left: 9.818143e-01	ci right 9.821949e-01	k: 1846170	n:1880000
KS ci ratio: 1.461633e-01	ci left: 3.544916e-04	ci right 4.108959e-04	k: 718	n:1880000
DPY19L1   1880000 perm   1729 sec   (1087 perm/sec)   p_kst 3.819149e-04   p_cons 9.820053e-01   p_joint 1.101596e-03

Joint ci ratio: 8.580118e-02	ci left: 1.055832e-03	ci right 1.150998e-03	k: 2084	n:1890000
Cons ci ratio: 3.858518e-04	ci left: 9.818275e-01	ci right 9.822070e-01	k: 1856014	n:1890000
KS ci ratio: 1.459605e-01	ci left: 3.536355e-04	ci right 4.098187e-04	k: 720	n:1890000
DPY19L1   1890000 perm   1745 sec   (1083 perm/sec)   p_kst 3.809524e-04   p_cons 9.820180e-01   p_joint 1.102646e-03

Joint ci ratio: 8.555530e-02	ci left: 1.056456e-03	ci right 1.151391e-03	k: 2096	n:1900000
Cons ci ratio: 3.848934e-04	ci left: 9.818227e-01	ci right 9.822011e-01	k: 1865824	n:1900000
KS ci ratio: 1.454570e-01	ci left: 3.543099e-04	ci right 4.103892e-04	k: 725	n:1900000
DPY19L1   1900000 perm   1762 sec   (1078 perm/sec)   p_kst 3.815789e-04   p_cons 9.820126e-01   p_joint 1.103158e-03

Joint ci ratio: 8.600840e-02	ci left: 1.039653e-03	ci right 1.133598e-03	k: 2074	n:1910000
Cons ci ratio: 3.837884e-04	ci left: 9.818320e-01	ci right 9.822094e-01	k: 1875661	n:1910000
KS ci ratio: 1.451574e-01	ci left: 3.539684e-04	ci right 4.098683e-04	k: 728	n:1910000
DPY19L1   1910000 perm   1778 sec   (1074 perm/sec)   p_kst 3.811518e-04   p_cons 9.820215e-01   p_joint 1.085864e-03

Joint ci ratio: 8.578133e-02	ci left: 1.039844e-03	ci right 1.133546e-03	k: 2085	n:1920000
Cons ci ratio: 3.827268e-04	ci left: 9.818382e-01	ci right 9.822145e-01	k: 1885492	n:1920000
KS ci ratio: 1.447608e-01	ci left: 3.541326e-04	ci right 4.098924e-04	k: 732	n:1920000
DPY19L1   1920000 perm   1795 sec   (1070 perm/sec)   p_kst 3.812500e-04   p_cons 9.820271e-01   p_joint 1.085938e-03

Joint ci ratio: 8.565833e-02	ci left: 1.037499e-03	ci right 1.130848e-03	k: 2091	n:1930000
Cons ci ratio: 3.817130e-04	ci left: 9.818406e-01	ci right 9.822160e-01	k: 1895316	n:1930000
KS ci ratio: 1.443674e-01	ci left: 3.542953e-04	ci right 4.099161e-04	k: 736	n:1930000
DPY19L1   1930000 perm   1812 sec   (1065 perm/sec)   p_kst 3.813472e-04   p_cons 9.820290e-01   p_joint 1.083420e-03

Joint ci ratio: 8.555628e-02	ci left: 1.034673e-03	ci right 1.127652e-03	k: 2096	n:1940000
Cons ci ratio: 3.809130e-04	ci left: 9.818239e-01	ci right 9.821984e-01	k: 1905103	n:1940000
KS ci ratio: 1.438802e-01	ci left: 3.549535e-04	ci right 4.104733e-04	k: 741	n:1940000
DPY19L1   1940000 perm   1829 sec   (1061 perm/sec)   p_kst 3.819588e-04   p_cons 9.820119e-01   p_joint 1.080412e-03

Joint ci ratio: 8.539361e-02	ci left: 1.033382e-03	ci right 1.126059e-03	k: 2104	n:1950000
Cons ci ratio: 3.800349e-04	ci left: 9.818150e-01	ci right 9.821887e-01	k: 1914905	n:1950000
KS ci ratio: 1.434939e-01	ci left: 3.551107e-04	ci right 4.104933e-04	k: 745	n:1950000
DPY19L1   1950000 perm   1846 sec   (1057 perm/sec)   p_kst 3.820513e-04   p_cons 9.820026e-01   p_joint 1.078974e-03

Joint ci ratio: 8.511098e-02	ci left: 1.035100e-03	ci right 1.127609e-03	k: 2118	n:1960000
Cons ci ratio: 3.791901e-04	ci left: 9.818037e-01	ci right 9.821765e-01	k: 1924702	n:1960000
KS ci ratio: 1.431107e-01	ci left: 3.552666e-04	ci right 4.105129e-04	k: 749	n:1960000
DPY19L1   1960000 perm   1863 sec   (1052 perm/sec)   p_kst 3.821429e-04   p_cons 9.819908e-01   p_joint 1.080612e-03

Joint ci ratio: 8.487098e-02	ci left: 1.035807e-03	ci right 1.128106e-03	k: 2130	n:1970000
Cons ci ratio: 3.781826e-04	ci left: 9.818083e-01	ci right 9.821801e-01	k: 1934530	n:1970000
KS ci ratio: 1.428254e-01	ci left: 3.549316e-04	ci right 4.100063e-04	k: 752	n:1970000
DPY19L1   1970000 perm   1880 sec   (1048 perm/sec)   p_kst 3.817259e-04   p_cons 9.819949e-01   p_joint 1.081218e-03

Joint ci ratio: 8.453433e-02	ci left: 1.038980e-03	ci right 1.131176e-03	k: 2147	n:1980000
Cons ci ratio: 3.771075e-04	ci left: 9.818199e-01	ci right 9.821908e-01	k: 1944372	n:1980000
KS ci ratio: 1.421660e-01	ci left: 3.565483e-04	ci right 4.115969e-04	k: 759	n:1980000
DPY19L1   1980000 perm   1897 sec   (1044 perm/sec)   p_kst 3.833333e-04   p_cons 9.820061e-01   p_joint 1.084343e-03

Joint ci ratio: 8.429916e-02	ci left: 1.039662e-03	ci right 1.131649e-03	k: 2159	n:1990000
Cons ci ratio: 3.761377e-04	ci left: 9.818224e-01	ci right 9.821923e-01	k: 1954196	n:1990000
KS ci ratio: 1.418863e-01	ci left: 3.562106e-04	ci right 4.110896e-04	k: 762	n:1990000
DPY19L1   1990000 perm   1914 sec   (1040 perm/sec)   p_kst 3.829146e-04   p_cons 9.820080e-01   p_joint 1.084925e-03

Joint ci ratio: 8.410472e-02	ci left: 1.039358e-03	ci right 1.131096e-03	k: 2169	n:2000000
Cons ci ratio: 3.751382e-04	ci left: 9.818284e-01	ci right 9.821972e-01	k: 1964027	n:2000000
KS ci ratio: 1.417008e-01	ci left: 3.553940e-04	ci right 4.100696e-04	k: 764	n:2000000
DPY19L1   2000000 perm   1930 sec   (1036 perm/sec)   p_kst 3.820000e-04   p_cons 9.820135e-01   p_joint 1.084500e-03

Joint ci ratio: 8.402745e-02	ci left: 1.036136e-03	ci right 1.127501e-03	k: 2173	n:2010000
Cons ci ratio: 3.742045e-04	ci left: 9.818288e-01	ci right 9.821967e-01	k: 1973847	n:2010000
KS ci ratio: 1.415160e-01	ci left: 3.545857e-04	ci right 4.090598e-04	k: 766	n:2010000
DPY19L1   2010000 perm   1947 sec   (1032 perm/sec)   p_kst 3.810945e-04   p_cons 9.820134e-01   p_joint 1.081095e-03

Joint ci ratio: 8.375813e-02	ci left: 1.037792e-03	ci right 1.128995e-03	k: 2187	n:2020000
Cons ci ratio: 3.733563e-04	ci left: 9.818217e-01	ci right 9.821888e-01	k: 1983652	n:2020000
KS ci ratio: 1.412400e-01	ci left: 3.542629e-04	ci right 4.085724e-04	k: 769	n:2020000
DPY19L1   2020000 perm   1965 sec   (1028 perm/sec)   p_kst 3.806931e-04   p_cons 9.820059e-01   p_joint 1.082673e-03

Joint ci ratio: 8.178035e-02	ci left: 1.084299e-03	ci right 1.177232e-03	k: 2294	n:2030000
Cons ci ratio: 3.724462e-04	ci left: 9.818211e-01	ci right 9.821874e-01	k: 1993470	n:2030000
KS ci ratio: 1.408746e-01	ci left: 3.544187e-04	ci right 4.085996e-04	k: 773	n:2030000
DPY19L1   2030000 perm   1982 sec   (1024 perm/sec)   p_kst 3.807882e-04   p_cons 9.820049e-01   p_joint 1.130049e-03

Joint ci ratio: 8.151433e-02	ci left: 1.086187e-03	ci right 1.178964e-03	k: 2309	n:2040000
Cons ci ratio: 3.715067e-04	ci left: 9.818240e-01	ci right 9.821893e-01	k: 2003295	n:2040000
KS ci ratio: 1.402417e-01	ci left: 3.559921e-04	ci right 4.101486e-04	k: 780	n:2040000
DPY19L1   2040000 perm   2000 sec   (1020 perm/sec)   p_kst 3.823529e-04   p_cons 9.820074e-01   p_joint 1.131863e-03

Joint ci ratio: 8.125088e-02	ci left: 1.088056e-03	ci right 1.180679e-03	k: 2324	n:2050000
Cons ci ratio: 3.705487e-04	ci left: 9.818293e-01	ci right 9.821937e-01	k: 2013125	n:2050000
KS ci ratio: 1.398840e-01	ci left: 3.561384e-04	ci right 4.101674e-04	k: 784	n:2050000
DPY19L1   2050000 perm   2017 sec   (1016 perm/sec)   p_kst 3.824390e-04   p_cons 9.820122e-01   p_joint 1.133659e-03

Joint ci ratio: 8.109412e-02	ci left: 1.087055e-03	ci right 1.179406e-03	k: 2333	n:2060000
Cons ci ratio: 3.696386e-04	ci left: 9.818307e-01	ci right 9.821942e-01	k: 2022947	n:2060000
KS ci ratio: 1.396175e-01	ci left: 3.558149e-04	ci right 4.096835e-04	k: 787	n:2060000
DPY19L1   2060000 perm   2034 sec   (1013 perm/sec)   p_kst 3.820388e-04   p_cons 9.820131e-01   p_joint 1.132524e-03

Joint ci ratio: 8.112915e-02	ci left: 1.080856e-03	ci right 1.172722e-03	k: 2331	n:2070000
Cons ci ratio: 3.685335e-04	ci left: 9.818515e-01	ci right 9.822139e-01	k: 2032809	n:2070000
KS ci ratio: 1.390889e-01	ci left: 3.568935e-04	ci right 4.107039e-04	k: 793	n:2070000
DPY19L1   2070000 perm   2052 sec   (1009 perm/sec)   p_kst 3.830918e-04   p_cons 9.820333e-01   p_joint 1.126087e-03

Joint ci ratio: 8.097309e-02	ci left: 1.079899e-03	ci right 1.171499e-03	k: 2340	n:2080000
Cons ci ratio: 3.677283e-04	ci left: 9.818440e-01	ci right 9.822056e-01	k: 2042613	n:2080000
KS ci ratio: 1.389141e-01	ci left: 3.561058e-04	ci right 4.097243e-04	k: 795	n:2080000
DPY19L1   2080000 perm   2070 sec   (1005 perm/sec)   p_kst 3.822115e-04   p_cons 9.820255e-01   p_joint 1.125000e-03

Joint ci ratio: 8.081793e-02	ci left: 1.078951e-03	ci right 1.170287e-03	k: 2349	n:2090000
Cons ci ratio: 3.668686e-04	ci left: 9.818424e-01	ci right 9.822031e-01	k: 2052429	n:2090000
KS ci ratio: 1.387400e-01	ci left: 3.553256e-04	ci right 4.087541e-04	k: 797	n:2090000
DPY19L1   2090000 perm   2088 sec   (1001 perm/sec)   p_kst 3.813397e-04   p_cons 9.820234e-01   p_joint 1.123923e-03

Joint ci ratio: 8.062945e-02	ci left: 1.078946e-03	ci right 1.170058e-03	k: 2360	n:2100000
Cons ci ratio: 3.658669e-04	ci left: 9.818552e-01	ci right 9.822149e-01	k: 2062275	n:2100000
KS ci ratio: 1.382212e-01	ci left: 3.563918e-04	ci right 4.097637e-04	k: 803	n:2100000
DPY19L1   2100000 perm   2106 sec   (997 perm/sec)   p_kst 3.823810e-04   p_cons 9.820357e-01   p_joint 1.123810e-03

Joint ci ratio: 8.039140e-02	ci left: 1.080334e-03	ci right 1.171281e-03	k: 2374	n:2110000
Cons ci ratio: 3.650692e-04	ci left: 9.818488e-01	ci right 9.822077e-01	k: 2072081	n:2110000
KS ci ratio: 1.376233e-01	ci left: 3.579058e-04	ci right 4.112536e-04	k: 810	n:2110000
DPY19L1   2110000 perm   2124 sec   (993 perm/sec)   p_kst 3.838863e-04   p_cons 9.820289e-01   p_joint 1.125118e-03

Joint ci ratio: 8.018906e-02	ci left: 1.080785e-03	ci right 1.171530e-03	k: 2386	n:2120000
Cons ci ratio: 3.641599e-04	ci left: 9.818538e-01	ci right 9.822119e-01	k: 2081911	n:2120000
KS ci ratio: 1.372852e-01	ci left: 3.580395e-04	ci right 4.112654e-04	k: 814	n:2120000
DPY19L1   2120000 perm   2142 sec   (990 perm/sec)   p_kst 3.839623e-04   p_cons 9.820335e-01   p_joint 1.125472e-03

Joint ci ratio: 8.005508e-02	ci left: 1.079391e-03	ci right 1.169861e-03	k: 2394	n:2130000
Cons ci ratio: 3.632525e-04	ci left: 9.818592e-01	ci right 9.822164e-01	k: 2091742	n:2130000
KS ci ratio: 1.371171e-01	ci left: 3.572652e-04	ci right 4.103057e-04	k: 816	n:2130000
DPY19L1   2130000 perm   2161 sec   (986 perm/sec)   p_kst 3.830986e-04   p_cons 9.820385e-01   p_joint 1.123944e-03

Joint ci ratio: 7.987187e-02	ci left: 1.079385e-03	ci right 1.169638e-03	k: 2405	n:2140000
Cons ci ratio: 3.625054e-04	ci left: 9.818496e-01	ci right 9.822061e-01	k: 2101541	n:2140000
KS ci ratio: 1.368661e-01	ci left: 3.569496e-04	ci right 4.098383e-04	k: 819	n:2140000
DPY19L1   2140000 perm   2179 sec   (982 perm/sec)   p_kst 3.827103e-04   p_cons 9.820285e-01   p_joint 1.123832e-03

Joint ci ratio: 7.970643e-02	ci left: 1.078923e-03	ci right 1.168941e-03	k: 2415	n:2150000
Cons ci ratio: 3.617294e-04	ci left: 9.818434e-01	ci right 9.821991e-01	k: 2111347	n:2150000
KS ci ratio: 1.365335e-01	ci left: 3.570862e-04	ci right 4.098561e-04	k: 823	n:2150000
DPY19L1   2150000 perm   2197 sec   (978 perm/sec)   p_kst 3.827907e-04   p_cons 9.820219e-01   p_joint 1.123256e-03

Joint ci ratio: 7.949282e-02	ci left: 1.079826e-03	ci right 1.169668e-03	k: 2428	n:2160000
Cons ci ratio: 3.608969e-04	ci left: 9.818432e-01	ci right 9.821981e-01	k: 2121166	n:2160000
KS ci ratio: 1.361211e-01	ci left: 3.576689e-04	ci right 4.103524e-04	k: 828	n:2160000
DPY19L1   2160000 perm   2216 sec   (975 perm/sec)   p_kst 3.833333e-04   p_cons 9.820213e-01   p_joint 1.124074e-03

Joint ci ratio: 7.918358e-02	ci left: 1.083432e-03	ci right 1.173207e-03	k: 2447	n:2170000
Cons ci ratio: 3.600371e-04	ci left: 9.818463e-01	ci right 9.822003e-01	k: 2130992	n:2170000
KS ci ratio: 1.358755e-01	ci left: 3.573561e-04	ci right 4.098908e-04	k: 831	n:2170000
DPY19L1   2170000 perm   2235 sec   (971 perm/sec)   p_kst 3.829493e-04   p_cons 9.820240e-01   p_joint 1.127650e-03

Joint ci ratio: 7.892599e-02	ci left: 1.085657e-03	ci right 1.175310e-03	k: 2463	n:2180000
Cons ci ratio: 3.592022e-04	ci left: 9.818475e-01	ci right 9.822007e-01	k: 2140814	n:2180000
KS ci ratio: 1.353074e-01	ci left: 3.588190e-04	ci right 4.113305e-04	k: 838	n:2180000
DPY19L1   2180000 perm   2254 sec   (967 perm/sec)   p_kst 3.844037e-04   p_cons 9.820248e-01   p_joint 1.129817e-03

Joint ci ratio: 7.892619e-02	ci left: 1.080699e-03	ci right 1.169943e-03	k: 2463	n:2190000
Cons ci ratio: 3.583081e-04	ci left: 9.818552e-01	ci right 9.822075e-01	k: 2150650	n:2190000
KS ci ratio: 1.351464e-01	ci left: 3.580629e-04	ci right 4.103964e-04	k: 840	n:2190000
DPY19L1   2190000 perm   2273 sec   (964 perm/sec)   p_kst 3.835616e-04   p_cons 9.820320e-01   p_joint 1.124658e-03

Joint ci ratio: 7.974050e-02	ci left: 1.053510e-03	ci right 1.141448e-03	k: 2413	n:2200000
Cons ci ratio: 3.574943e-04	ci left: 9.818554e-01	ci right 9.822069e-01	k: 2160470	n:2200000
KS ci ratio: 1.349060e-01	ci left: 3.577529e-04	ci right 4.099406e-04	k: 843	n:2200000
DPY19L1   2200000 perm   2291 sec   (960 perm/sec)   p_kst 3.831818e-04   p_cons 9.820318e-01   p_joint 1.096818e-03

Joint ci ratio: 7.964167e-02	ci left: 1.051404e-03	ci right 1.139052e-03	k: 2419	n:2210000
Cons ci ratio: 3.566631e-04	ci left: 9.818580e-01	ci right 9.822087e-01	k: 2170295	n:2210000
KS ci ratio: 1.347465e-01	ci left: 3.570085e-04	ci right 4.090212e-04	k: 845	n:2210000
DPY19L1   2210000 perm   2310 sec   (957 perm/sec)   p_kst 3.823529e-04   p_cons 9.820339e-01   p_joint 1.094570e-03

Joint ci ratio: 7.944493e-02	ci left: 1.051966e-03	ci right 1.139434e-03	k: 2431	n:2220000
Cons ci ratio: 3.558150e-04	ci left: 9.818627e-01	ci right 9.822126e-01	k: 2180125	n:2220000
KS ci ratio: 1.345083e-01	ci left: 3.567062e-04	ci right 4.085756e-04	k: 848	n:2220000
DPY19L1   2220000 perm   2329 sec   (953 perm/sec)   p_kst 3.819820e-04   p_cons 9.820383e-01   p_joint 1.095045e-03

Joint ci ratio: 7.928211e-02	ci left: 1.051644e-03	ci right 1.138898e-03	k: 2441	n:2230000
Cons ci ratio: 3.548194e-04	ci left: 9.818828e-01	ci right 9.822317e-01	k: 2189989	n:2230000
KS ci ratio: 1.342713e-01	ci left: 3.564067e-04	ci right 4.081339e-04	k: 851	n:2230000
DPY19L1   2230000 perm   2347 sec   (950 perm/sec)   p_kst 3.816143e-04   p_cons 9.820578e-01   p_joint 1.094619e-03

Joint ci ratio: 7.929856e-02	ci left: 1.046511e-03	ci right 1.133358e-03	k: 2440	n:2240000
Cons ci ratio: 3.540471e-04	ci left: 9.818811e-01	ci right 9.822292e-01	k: 2199805	n:2240000
KS ci ratio: 1.340356e-01	ci left: 3.561099e-04	ci right 4.076961e-04	k: 854	n:2240000
DPY19L1   2240000 perm   2366 sec   (947 perm/sec)   p_kst 3.812500e-04   p_cons 9.820558e-01   p_joint 1.089286e-03

Joint ci ratio: 7.913665e-02	ci left: 1.046216e-03	ci right 1.132854e-03	k: 2450	n:2250000
Cons ci ratio: 3.532842e-04	ci left: 9.818790e-01	ci right 9.822264e-01	k: 2209620	n:2250000
KS ci ratio: 1.337231e-01	ci left: 3.562455e-04	ci right 4.077214e-04	k: 858	n:2250000
DPY19L1   2250000 perm   2385 sec   (943 perm/sec)   p_kst 3.813333e-04   p_cons 9.820533e-01   p_joint 1.088889e-03

Joint ci ratio: 9.350933e-02	ci left: 7.406516e-04	ci right 8.137347e-04	k: 1755	n:2260000
Cons ci ratio: 3.306371e-04	ci left: 9.840130e-01	ci right 9.843388e-01	k: 2224239	n:2260000
KS ci ratio: 1.335678e-01	ci left: 3.555245e-04	ci right 4.068318e-04	k: 860	n:2260000
DPY19L1   2260000 perm   2405 sec   (940 perm/sec)   p_kst 3.805310e-04   p_cons 9.841765e-01   p_joint 7.765487e-04

Joint ci ratio: 9.332352e-02	ci left: 7.404005e-04	ci right 8.133057e-04	k: 1762	n:2270000
Cons ci ratio: 3.298929e-04	ci left: 9.840148e-01	ci right 9.843399e-01	k: 2234084	n:2270000
KS ci ratio: 1.332586e-01	ci left: 3.556616e-04	ci right 4.068605e-04	k: 864	n:2270000
DPY19L1   2270000 perm   2424 sec   (937 perm/sec)   p_kst 3.806167e-04   p_cons 9.841780e-01   p_joint 7.762115e-04

Joint ci ratio: 9.308620e-02	ci left: 7.410085e-04	ci right 8.137779e-04	k: 1771	n:2280000
Cons ci ratio: 3.291398e-04	ci left: 9.840179e-01	ci right 9.843423e-01	k: 2243932	n:2280000
KS ci ratio: 1.331048e-01	ci left: 3.549497e-04	ci right 4.059825e-04	k: 866	n:2280000
DPY19L1   2280000 perm   2443 sec   (933 perm/sec)   p_kst 3.798246e-04   p_cons 9.841807e-01   p_joint 7.767544e-04

Joint ci ratio: 9.295520e-02	ci left: 7.399053e-04	ci right 8.124585e-04	k: 1776	n:2290000
Cons ci ratio: 3.283043e-04	ci left: 9.840293e-01	ci right 9.843529e-01	k: 2253799	n:2290000
KS ci ratio: 1.327988e-01	ci left: 3.550883e-04	ci right 4.060144e-04	k: 870	n:2290000
DPY19L1   2290000 perm   2462 sec   (930 perm/sec)   p_kst 3.799127e-04   p_cons 9.841917e-01   p_joint 7.755459e-04

Joint ci ratio: 9.277267e-02	ci left: 7.396611e-04	ci right 8.120402e-04	k: 1783	n:2300000
Cons ci ratio: 3.276352e-04	ci left: 9.840253e-01	ci right 9.843482e-01	k: 2263631	n:2300000
KS ci ratio: 1.325708e-01	ci left: 3.548055e-04	ci right 4.055967e-04	k: 873	n:2300000
DPY19L1   2300000 perm   2482 sec   (927 perm/sec)   p_kst 3.795652e-04   p_cons 9.841874e-01   p_joint 7.752174e-04

Joint ci ratio: 9.256535e-02	ci left: 7.398420e-04	ci right 8.120683e-04	k: 1791	n:2310000
Cons ci ratio: 3.269156e-04	ci left: 9.840266e-01	ci right 9.843488e-01	k: 2273475	n:2310000
KS ci ratio: 1.323438e-01	ci left: 3.545252e-04	ci right 4.051826e-04	k: 876	n:2310000
DPY19L1   2310000 perm   2502 sec   (923 perm/sec)   p_kst 3.792208e-04   p_cons 9.841883e-01   p_joint 7.753247e-04

Joint ci ratio: 9.233375e-02	ci left: 7.404427e-04	ci right 8.125370e-04	k: 1800	n:2320000
Cons ci ratio: 3.262369e-04	ci left: 9.840244e-01	ci right 9.843459e-01	k: 2283311	n:2320000
KS ci ratio: 1.319681e-01	ci left: 3.550810e-04	ci right 4.056625e-04	k: 881	n:2320000
DPY19L1   2320000 perm   2521 sec   (920 perm/sec)   p_kst 3.797414e-04   p_cons 9.841858e-01   p_joint 7.758621e-04

Joint ci ratio: 9.215485e-02	ci left: 7.401998e-04	ci right 8.121233e-04	k: 1807	n:2330000
Cons ci ratio: 3.256251e-04	ci left: 9.840162e-01	ci right 9.843371e-01	k: 2293133	n:2330000
KS ci ratio: 1.316699e-01	ci left: 3.552172e-04	ci right 4.056948e-04	k: 885	n:2330000
DPY19L1   2330000 perm   2541 sec   (917 perm/sec)   p_kst 3.798283e-04   p_cons 9.841773e-01   p_joint 7.755365e-04

Joint ci ratio: 9.202774e-02	ci left: 7.391241e-04	ci right 8.108386e-04	k: 1812	n:2340000
Cons ci ratio: 3.249142e-04	ci left: 9.840179e-01	ci right 9.843381e-01	k: 2302978	n:2340000
KS ci ratio: 1.314476e-01	ci left: 3.549390e-04	ci right 4.052853e-04	k: 888	n:2340000
DPY19L1   2340000 perm   2561 sec   (914 perm/sec)   p_kst 3.794872e-04   p_cons 9.841786e-01   p_joint 7.743590e-04

Joint ci ratio: 9.187587e-02	ci left: 7.384733e-04	ci right 8.100002e-04	k: 1818	n:2350000
Cons ci ratio: 3.241769e-04	ci left: 9.840226e-01	ci right 9.843421e-01	k: 2312830	n:2350000
KS ci ratio: 1.311528e-01	ci left: 3.550748e-04	ci right 4.053187e-04	k: 892	n:2350000
DPY19L1   2350000 perm   2581 sec   (910 perm/sec)   p_kst 3.795745e-04   p_cons 9.841830e-01   p_joint 7.736170e-04

Joint ci ratio: 8.256471e-02	ci left: 9.148316e-04	ci right 9.940283e-04	k: 2251	n:2360000
Cons ci ratio: 3.234754e-04	ci left: 9.840243e-01	ci right 9.843431e-01	k: 2322675	n:2360000
KS ci ratio: 1.306417e-01	ci left: 3.564393e-04	ci right 4.066644e-04	k: 899	n:2360000
DPY19L1   2360000 perm   2602 sec   (907 perm/sec)   p_kst 3.809322e-04   p_cons 9.841843e-01   p_joint 9.538136e-04

Joint ci ratio: 8.295292e-02	ci left: 9.022939e-04	ci right 9.807903e-04	k: 2230	n:2370000
Cons ci ratio: 3.227740e-04	ci left: 9.840264e-01	ci right 9.843445e-01	k: 2332521	n:2370000
KS ci ratio: 1.305693e-01	ci left: 3.553435e-04	ci right 4.053842e-04	k: 900	n:2370000
DPY19L1   2370000 perm   2622 sec   (904 perm/sec)   p_kst 3.797468e-04   p_cons 9.841861e-01   p_joint 9.409283e-04

Joint ci ratio: 8.286020e-02	ci left: 9.005600e-04	ci right 9.788138e-04	k: 2235	n:2380000
Cons ci ratio: 3.220685e-04	ci left: 9.840294e-01	ci right 9.843468e-01	k: 2342369	n:2380000
KS ci ratio: 1.303525e-01	ci left: 3.550698e-04	ci right 4.049826e-04	k: 903	n:2380000
DPY19L1   2380000 perm   2642 sec   (901 perm/sec)   p_kst 3.794118e-04   p_cons 9.841887e-01   p_joint 9.390756e-04

Joint ci ratio: 8.271239e-02	ci left: 9.000699e-04	ci right 9.781349e-04	k: 2243	n:2390000
Cons ci ratio: 3.213848e-04	ci left: 9.840306e-01	ci right 9.843473e-01	k: 2352213	n:2390000
KS ci ratio: 1.302086e-01	ci left: 3.543937e-04	ci right 4.041522e-04	k: 905	n:2390000
DPY19L1   2390000 perm   2662 sec   (898 perm/sec)   p_kst 3.786611e-04   p_cons 9.841895e-01   p_joint 9.384937e-04

Joint ci ratio: 8.247378e-02	ci left: 9.016245e-04	ci right 9.795878e-04	k: 2256	n:2400000
Cons ci ratio: 3.206669e-04	ci left: 9.840356e-01	ci right 9.843516e-01	k: 2362066	n:2400000
KS ci ratio: 1.298507e-01	ci left: 3.549326e-04	ci right 4.046192e-04	k: 910	n:2400000
DPY19L1   2400000 perm   2682 sec   (895 perm/sec)   p_kst 3.791667e-04   p_cons 9.841942e-01   p_joint 9.400000e-04

Joint ci ratio: 8.230984e-02	ci left: 9.015408e-04	ci right 9.793345e-04	k: 2265	n:2410000
Cons ci ratio: 3.199195e-04	ci left: 9.840439e-01	ci right 9.843591e-01	k: 2371927	n:2410000
KS ci ratio: 1.296375e-01	ci left: 3.546643e-04	ci right 4.042255e-04	k: 913	n:2410000
DPY19L1   2410000 perm   2703 sec   (892 perm/sec)   p_kst 3.788382e-04   p_cons 9.842021e-01   p_joint 9.398340e-04

Joint ci ratio: 8.223738e-02	ci left: 8.994342e-04	ci right 9.769746e-04	k: 2269	n:2420000
Cons ci ratio: 3.191773e-04	ci left: 9.840521e-01	ci right 9.843666e-01	k: 2381788	n:2420000
KS ci ratio: 1.294959e-01	ci left: 3.539984e-04	ci right 4.034084e-04	k: 915	n:2420000
DPY19L1   2420000 perm   2723 sec   (889 perm/sec)   p_kst 3.780992e-04   p_cons 9.842099e-01   p_joint 9.376033e-04

Joint ci ratio: 8.207484e-02	ci left: 8.993605e-04	ci right 9.767339e-04	k: 2278	n:2430000
Cons ci ratio: 3.185077e-04	ci left: 9.840536e-01	ci right 9.843675e-01	k: 2391633	n:2430000
KS ci ratio: 1.294254e-01	ci left: 3.529398e-04	ci right 4.021731e-04	k: 916	n:2430000
DPY19L1   2430000 perm   2744 sec   (886 perm/sec)   p_kst 3.769547e-04   p_cons 9.842111e-01   p_joint 9.374486e-04

Joint ci ratio: 8.187746e-02	ci left: 9.000904e-04	ci right 9.773315e-04	k: 2289	n:2440000
Cons ci ratio: 3.178548e-04	ci left: 9.840539e-01	ci right 9.843671e-01	k: 2401475	n:2440000
KS ci ratio: 1.289341e-01	ci left: 3.542694e-04	ci right 4.034864e-04	k: 923	n:2440000
DPY19L1   2440000 perm   2765 sec   (883 perm/sec)   p_kst 3.782787e-04   p_cons 9.842111e-01   p_joint 9.381148e-04

Joint ci ratio: 8.177046e-02	ci left: 8.988154e-04	ci right 9.758414e-04	k: 2295	n:2450000
Cons ci ratio: 3.171892e-04	ci left: 9.840558e-01	ci right 9.843684e-01	k: 2411321	n:2450000
KS ci ratio: 1.288644e-01	ci left: 3.532184e-04	ci right 4.022608e-04	k: 924	n:2450000
DPY19L1   2450000 perm   2786 sec   (880 perm/sec)   p_kst 3.771429e-04   p_cons 9.842127e-01   p_joint 9.367347e-04

Joint ci ratio: 8.161067e-02	ci left: 8.987455e-04	ci right 9.756079e-04	k: 2304	n:2460000
Cons ci ratio: 3.164657e-04	ci left: 9.840638e-01	ci right 9.843757e-01	k: 2421182	n:2460000
KS ci ratio: 1.287949e-01	ci left: 3.521760e-04	ci right 4.010452e-04	k: 925	n:2460000
DPY19L1   2460000 perm   2807 sec   (877 perm/sec)   p_kst 3.760163e-04   p_cons 9.842203e-01   p_joint 9.365854e-04

Joint ci ratio: 8.187792e-02	ci left: 8.891579e-04	ci right 9.654613e-04	k: 2289	n:2470000
Cons ci ratio: 3.158376e-04	ci left: 9.840628e-01	ci right 9.843741e-01	k: 2431021	n:2470000
KS ci ratio: 1.285868e-01	ci left: 3.519256e-04	ci right 4.006752e-04	k: 928	n:2470000
DPY19L1   2470000 perm   2827 sec   (874 perm/sec)   p_kst 3.757085e-04   p_cons 9.842190e-01   p_joint 9.267206e-04

Joint ci ratio: 8.173530e-02	ci left: 8.887324e-04	ci right 9.648601e-04	k: 2297	n:2480000
Cons ci ratio: 3.151559e-04	ci left: 9.840675e-01	ci right 9.843781e-01	k: 2440874	n:2480000
KS ci ratio: 1.283109e-01	ci left: 3.520677e-04	ci right 4.007243e-04	k: 932	n:2480000
DPY19L1   2480000 perm   2849 sec   (871 perm/sec)   p_kst 3.758065e-04   p_cons 9.842234e-01   p_joint 9.262097e-04

Joint ci ratio: 8.159342e-02	ci left: 8.883104e-04	ci right 9.642636e-04	k: 2305	n:2490000
Cons ci ratio: 3.144664e-04	ci left: 9.840734e-01	ci right 9.843833e-01	k: 2450730	n:2490000
KS ci ratio: 1.280367e-01	ci left: 3.522087e-04	ci right 4.007729e-04	k: 936	n:2490000
DPY19L1   2490000 perm   2870 sec   (868 perm/sec)   p_kst 3.759036e-04   p_cons 9.842289e-01   p_joint 9.257028e-04

Joint ci ratio: 8.138190e-02	ci left: 8.894594e-04	ci right 9.653043e-04	k: 2317	n:2500000
Cons ci ratio: 3.138623e-04	ci left: 9.840712e-01	ci right 9.843805e-01	k: 2460566	n:2500000
KS ci ratio: 1.276964e-01	ci left: 3.527359e-04	ci right 4.012337e-04	k: 941	n:2500000
DPY19L1   2500000 perm   2891 sec   (865 perm/sec)   p_kst 3.764000e-04   p_cons 9.842264e-01   p_joint 9.268000e-04

Joint ci ratio: 8.166464e-02	ci left: 8.796710e-04	ci right 9.549542e-04	k: 2301	n:2510000
Cons ci ratio: 3.132294e-04	ci left: 9.840722e-01	ci right 9.843809e-01	k: 2470410	n:2510000
KS ci ratio: 1.274936e-01	ci left: 3.524876e-04	ci right 4.008685e-04	k: 944	n:2510000
DPY19L1   2510000 perm   2912 sec   (862 perm/sec)   p_kst 3.760956e-04   p_cons 9.842271e-01   p_joint 9.167331e-04

Joint ci ratio: 8.159387e-02	ci left: 8.777351e-04	ci right 9.527845e-04	k: 2305	n:2520000
Cons ci ratio: 3.125844e-04	ci left: 9.840748e-01	ci right 9.843828e-01	k: 2480258	n:2520000
KS ci ratio: 1.273589e-01	ci left: 3.518572e-04	ci right 4.000967e-04	k: 946	n:2520000
DPY19L1   2520000 perm   2933 sec   (859 perm/sec)   p_kst 3.753968e-04   p_cons 9.842294e-01   p_joint 9.146825e-04

Joint ci ratio: 8.134723e-02	ci left: 8.796867e-04	ci right 9.546648e-04	k: 2319	n:2530000
Cons ci ratio: 3.120308e-04	ci left: 9.840686e-01	ci right 9.843761e-01	k: 2490084	n:2530000
KS ci ratio: 1.268907e-01	ci left: 3.531453e-04	ci right 4.013700e-04	k: 953	n:2530000
DPY19L1   2530000 perm   2955 sec   (856 perm/sec)   p_kst 3.766798e-04   p_cons 9.842229e-01   p_joint 9.166008e-04

Joint ci ratio: 7.945042e-02	ci left: 9.194322e-04	ci right 9.958861e-04	k: 2431	n:2540000
Cons ci ratio: 3.113971e-04	ci left: 9.840708e-01	ci right 9.843777e-01	k: 2499931	n:2540000
KS ci ratio: 1.264935e-01	ci left: 3.540423e-04	ci right 4.022268e-04	k: 959	n:2540000
DPY19L1   2540000 perm   2977 sec   (853 perm/sec)   p_kst 3.775591e-04   p_cons 9.842248e-01   p_joint 9.570866e-04

Joint ci ratio: 7.938525e-02	ci left: 9.173640e-04	ci right 9.935805e-04	k: 2435	n:2550000
Cons ci ratio: 3.107162e-04	ci left: 9.840781e-01	ci right 9.843843e-01	k: 2509791	n:2550000
KS ci ratio: 1.263620e-01	ci left: 3.534134e-04	ci right 4.014586e-04	k: 961	n:2550000
DPY19L1   2550000 perm   2999 sec   (850 perm/sec)   p_kst 3.768627e-04   p_cons 9.842318e-01   p_joint 9.549020e-04

Joint ci ratio: 7.971361e-02	ci left: 9.061233e-04	ci right 9.817317e-04	k: 2415	n:2560000
Cons ci ratio: 3.101022e-04	ci left: 9.840791e-01	ci right 9.843847e-01	k: 2519635	n:2560000
KS ci ratio: 1.260349e-01	ci left: 3.539243e-04	ci right 4.019051e-04	k: 966	n:2560000
DPY19L1   2560000 perm   3020 sec   (848 perm/sec)   p_kst 3.773438e-04   p_cons 9.842324e-01   p_joint 9.433594e-04

Joint ci ratio: 7.949996e-02	ci left: 9.075552e-04	ci right 9.830707e-04	k: 2428	n:2570000
Cons ci ratio: 3.094568e-04	ci left: 9.840835e-01	ci right 9.843885e-01	k: 2529488	n:2570000
KS ci ratio: 1.257750e-01	ci left: 3.540546e-04	ci right 4.019467e-04	k: 970	n:2570000
DPY19L1   2570000 perm   3042 sec   (845 perm/sec)   p_kst 3.774319e-04   p_cons 9.842366e-01   p_joint 9.447471e-04

Joint ci ratio: 7.938569e-02	ci left: 9.066968e-04	ci right 9.820275e-04	k: 2435	n:2580000
Cons ci ratio: 3.088502e-04	ci left: 9.840845e-01	ci right 9.843888e-01	k: 2539332	n:2580000
KS ci ratio: 1.257103e-01	ci left: 3.530577e-04	ci right 4.007886e-04	k: 971	n:2580000
DPY19L1   2580000 perm   3064 sec   (842 perm/sec)   p_kst 3.763566e-04   p_cons 9.842372e-01   p_joint 9.437984e-04

Joint ci ratio: 7.927191e-02	ci left: 9.058451e-04	ci right 9.809922e-04	k: 2442	n:2590000
Cons ci ratio: 3.083047e-04	ci left: 9.840796e-01	ci right 9.843834e-01	k: 2549161	n:2590000
KS ci ratio: 1.253241e-01	ci left: 3.539384e-04	ci right 4.016304e-04	k: 977	n:2590000
DPY19L1   2590000 perm   3086 sec   (839 perm/sec)   p_kst 3.772201e-04   p_cons 9.842320e-01   p_joint 9.428571e-04

Joint ci ratio: 7.917480e-02	ci left: 9.046230e-04	ci right 9.795726e-04	k: 2448	n:2600000
Cons ci ratio: 3.077467e-04	ci left: 9.840763e-01	ci right 9.843796e-01	k: 2558994	n:2600000
KS ci ratio: 1.251962e-01	ci left: 3.533222e-04	ci right 4.008790e-04	k: 979	n:2600000
DPY19L1   2600000 perm   3107 sec   (837 perm/sec)   p_kst 3.765385e-04   p_cons 9.842285e-01   p_joint 9.415385e-04

Joint ci ratio: 7.898149e-02	ci left: 9.056639e-04	ci right 9.805080e-04	k: 2460	n:2610000
Cons ci ratio: 3.071652e-04	ci left: 9.840757e-01	ci right 9.843784e-01	k: 2568834	n:2610000
KS ci ratio: 1.248780e-01	ci left: 3.538243e-04	ci right 4.013187e-04	k: 984	n:2610000
DPY19L1   2610000 perm   3129 sec   (834 perm/sec)   p_kst 3.770115e-04   p_cons 9.842276e-01   p_joint 9.425287e-04

Joint ci ratio: 7.878959e-02	ci left: 9.066970e-04	ci right 9.814360e-04	k: 2472	n:2620000
Cons ci ratio: 3.065456e-04	ci left: 9.840793e-01	ci right 9.843814e-01	k: 2578685	n:2620000
KS ci ratio: 1.246883e-01	ci left: 3.535831e-04	ci right 4.009677e-04	k: 987	n:2620000
DPY19L1   2620000 perm   3152 sec   (831 perm/sec)   p_kst 3.767176e-04   p_cons 9.842309e-01   p_joint 9.435115e-04

Joint ci ratio: 7.871013e-02	ci left: 9.051131e-04	ci right 9.796430e-04	k: 2477	n:2630000
Cons ci ratio: 3.059896e-04	ci left: 9.840768e-01	ci right 9.843784e-01	k: 2588520	n:2630000
KS ci ratio: 1.246253e-01	ci left: 3.526071e-04	ci right 3.998352e-04	k: 988	n:2630000
DPY19L1   2630000 perm   3174 sec   (829 perm/sec)   p_kst 3.756654e-04   p_cons 9.842281e-01   p_joint 9.418251e-04

Joint ci ratio: 7.856759e-02	ci left: 9.050267e-04	ci right 9.794083e-04	k: 2486	n:2640000
Cons ci ratio: 3.054367e-04	ci left: 9.840744e-01	ci right 9.843753e-01	k: 2598355	n:2640000
KS ci ratio: 1.243740e-01	ci left: 3.527394e-04	ci right 3.998830e-04	k: 992	n:2640000
DPY19L1   2640000 perm   3196 sec   (826 perm/sec)   p_kst 3.757576e-04   p_cons 9.842254e-01   p_joint 9.416667e-04

Joint ci ratio: 7.842582e-02	ci left: 9.049411e-04	ci right 9.791753e-04	k: 2495	n:2650000
Cons ci ratio: 3.048496e-04	ci left: 9.840757e-01	ci right 9.843761e-01	k: 2608200	n:2650000
KS ci ratio: 1.241243e-01	ci left: 3.528708e-04	ci right 3.999303e-04	k: 996	n:2650000
DPY19L1   2650000 perm   3218 sec   (824 perm/sec)   p_kst 3.758491e-04   p_cons 9.842264e-01   p_joint 9.415094e-04

Joint ci ratio: 7.825355e-02	ci left: 9.055934e-04	ci right 9.797105e-04	k: 2506	n:2660000
Cons ci ratio: 3.042807e-04	ci left: 9.840755e-01	ci right 9.843753e-01	k: 2618041	n:2660000
KS ci ratio: 1.239380e-01	ci left: 3.526371e-04	ci right 3.995896e-04	k: 999	n:2660000
DPY19L1   2660000 perm   3240 sec   (821 perm/sec)   p_kst 3.755639e-04   p_cons 9.842259e-01   p_joint 9.421053e-04

Joint ci ratio: 7.817570e-02	ci left: 9.040376e-04	ci right 9.779505e-04	k: 2511	n:2670000
Cons ci ratio: 3.037443e-04	ci left: 9.840723e-01	ci right 9.843716e-01	k: 2627874	n:2670000
KS ci ratio: 1.238142e-01	ci left: 3.520422e-04	ci right 3.988653e-04	k: 1001	n:2670000
DPY19L1   2670000 perm   3263 sec   (818 perm/sec)   p_kst 3.749064e-04   p_cons 9.842225e-01   p_joint 9.404494e-04

Joint ci ratio: 7.792782e-02	ci left: 9.065180e-04	ci right 9.803880e-04	k: 2527	n:2680000
Cons ci ratio: 3.031888e-04	ci left: 9.840714e-01	ci right 9.843701e-01	k: 2637713	n:2680000
KS ci ratio: 1.235678e-01	ci left: 3.521749e-04	ci right 3.989157e-04	k: 1005	n:2680000
DPY19L1   2680000 perm   3285 sec   (816 perm/sec)   p_kst 3.750000e-04   p_cons 9.842213e-01   p_joint 9.429104e-04

Joint ci ratio: 7.769757e-02	ci left: 9.086158e-04	ci right 9.824281e-04	k: 2542	n:2690000
Cons ci ratio: 3.025711e-04	ci left: 9.840772e-01	ci right 9.843753e-01	k: 2647570	n:2690000
KS ci ratio: 1.232619e-01	ci left: 3.526671e-04	ci right 3.993488e-04	k: 1010	n:2690000
DPY19L1   2690000 perm   3308 sec   (813 perm/sec)   p_kst 3.754647e-04   p_cons 9.842268e-01   p_joint 9.449814e-04

Joint ci ratio: 7.748451e-02	ci left: 9.103352e-04	ci right 9.840752e-04	k: 2556	n:2700000
Cons ci ratio: 3.019320e-04	ci left: 9.840855e-01	ci right 9.843831e-01	k: 2657434	n:2700000
KS ci ratio: 1.229582e-01	ci left: 3.531558e-04	ci right 3.997786e-04	k: 1015	n:2700000
DPY19L1   2700000 perm   3330 sec   (811 perm/sec)   p_kst 3.759259e-04   p_cons 9.842348e-01   p_joint 9.466667e-04

Joint ci ratio: 7.740893e-02	ci left: 9.087853e-04	ci right 9.823247e-04	k: 2561	n:2710000
Cons ci ratio: 3.013147e-04	ci left: 9.840920e-01	ci right 9.843889e-01	k: 2667293	n:2710000
KS ci ratio: 1.227168e-01	ci left: 3.532833e-04	ci right 3.998247e-04	k: 1019	n:2710000
DPY19L1   2710000 perm   3353 sec   (808 perm/sec)   p_kst 3.760148e-04   p_cons 9.842410e-01   p_joint 9.450185e-04

Joint ci ratio: 7.768269e-02	ci left: 8.989547e-04	ci right 9.719675e-04	k: 2543	n:2720000
Cons ci ratio: 3.006940e-04	ci left: 9.840991e-01	ci right 9.843954e-01	k: 2677154	n:2720000
KS ci ratio: 1.224171e-01	ci left: 3.537663e-04	ci right 4.002494e-04	k: 1024	n:2720000
DPY19L1   2720000 perm   3376 sec   (806 perm/sec)   p_kst 3.764706e-04   p_cons 9.842478e-01   p_joint 9.349265e-04

Joint ci ratio: 7.937145e-02	ci left: 8.572365e-04	ci right 9.284445e-04	k: 2436	n:2730000
Cons ci ratio: 3.001445e-04	ci left: 9.840992e-01	ci right 9.843950e-01	k: 2686996	n:2730000
KS ci ratio: 1.222384e-01	ci left: 3.535357e-04	ci right 3.999157e-04	k: 1027	n:2730000
DPY19L1   2730000 perm   3399 sec   (803 perm/sec)   p_kst 3.761905e-04   p_cons 9.842476e-01   p_joint 8.923077e-04

Joint ci ratio: 7.925773e-02	ci left: 8.566119e-04	ci right 9.276614e-04	k: 2443	n:2740000
Cons ci ratio: 2.996297e-04	ci left: 9.840960e-01	ci right 9.843913e-01	k: 2696829	n:2740000
KS ci ratio: 1.219422e-01	ci left: 3.540146e-04	ci right 4.003367e-04	k: 1032	n:2740000
DPY19L1   2740000 perm   3422 sec   (801 perm/sec)   p_kst 3.766423e-04   p_cons 9.842442e-01   p_joint 8.916058e-04

Joint ci ratio: 7.909606e-02	ci left: 8.570614e-04	ci right 9.279964e-04	k: 2453	n:2750000
Cons ci ratio: 2.990228e-04	ci left: 9.841027e-01	ci right 9.843974e-01	k: 2706689	n:2750000
KS ci ratio: 1.215310e-01	ci left: 3.551952e-04	ci right 4.015039e-04	k: 1039	n:2750000
DPY19L1   2750000 perm   3446 sec   (798 perm/sec)   p_kst 3.778182e-04   p_cons 9.842505e-01   p_joint 8.920000e-04

Joint ci ratio: 7.885534e-02	ci left: 8.592836e-04	ci right 9.301761e-04	k: 2468	n:2760000
Cons ci ratio: 2.984231e-04	ci left: 9.841090e-01	ci right 9.844031e-01	k: 2716548	n:2760000
KS ci ratio: 1.212399e-01	ci left: 3.556648e-04	ci right 4.019157e-04	k: 1044	n:2760000
DPY19L1   2760000 perm   3469 sec   (796 perm/sec)   p_kst 3.782609e-04   p_cons 9.842565e-01   p_joint 8.942029e-04

Joint ci ratio: 7.877567e-02	ci left: 8.579509e-04	ci right 9.286588e-04	k: 2473	n:2770000
Cons ci ratio: 2.979310e-04	ci left: 9.841043e-01	ci right 9.843979e-01	k: 2726377	n:2770000
KS ci ratio: 1.208933e-01	ci left: 3.564813e-04	ci right 4.026964e-04	k: 1050	n:2770000
DPY19L1   2770000 perm   3492 sec   (793 perm/sec)   p_kst 3.790614e-04   p_cons 9.842516e-01   p_joint 8.927798e-04

Joint ci ratio: 7.866449e-02	ci left: 8.573332e-04	ci right 9.278858e-04	k: 2480	n:2780000
Cons ci ratio: 2.972860e-04	ci left: 9.841160e-01	ci right 9.844089e-01	k: 2736251	n:2780000
KS ci ratio: 1.207211e-01	ci left: 3.562455e-04	ci right 4.023595e-04	k: 1053	n:2780000
DPY19L1   2780000 perm   3516 sec   (791 perm/sec)   p_kst 3.787770e-04   p_cons 9.842629e-01   p_joint 8.920863e-04

Joint ci ratio: 7.860122e-02	ci left: 8.556657e-04	ci right 9.260220e-04	k: 2484	n:2790000
Cons ci ratio: 2.967137e-04	ci left: 9.841203e-01	ci right 9.844127e-01	k: 2746105	n:2790000
KS ci ratio: 1.206640e-01	ci left: 3.553163e-04	ci right 4.012867e-04	k: 1054	n:2790000
DPY19L1   2790000 perm   3540 sec   (788 perm/sec)   p_kst 3.777778e-04   p_cons 9.842670e-01   p_joint 8.903226e-04

Joint ci ratio: 7.877605e-02	ci left: 8.487584e-04	ci right 9.187090e-04	k: 2473	n:2800000
Cons ci ratio: 2.961481e-04	ci left: 9.841243e-01	ci right 9.844161e-01	k: 2755958	n:2800000
KS ci ratio: 1.205498e-01	ci left: 3.547400e-04	ci right 4.005893e-04	k: 1056	n:2800000
DPY19L1   2800000 perm   3563 sec   (786 perm/sec)   p_kst 3.771429e-04   p_cons 9.842707e-01   p_joint 8.832143e-04

Joint ci ratio: 7.906457e-02	ci left: 8.394585e-04	ci right 9.089077e-04	k: 2455	n:2810000
Cons ci ratio: 2.955789e-04	ci left: 9.841289e-01	ci right 9.844202e-01	k: 2765813	n:2810000
KS ci ratio: 1.203223e-01	ci left: 3.548582e-04	ci right 4.006301e-04	k: 1060	n:2810000
DPY19L1   2810000 perm   3587 sec   (783 perm/sec)   p_kst 3.772242e-04   p_cons 9.842751e-01   p_joint 8.736655e-04

Joint ci ratio: 7.885609e-02	ci left: 8.410006e-04	ci right 9.103855e-04	k: 2468	n:2820000
Cons ci ratio: 2.950163e-04	ci left: 9.841332e-01	ci right 9.844239e-01	k: 2775667	n:2820000
KS ci ratio: 1.200962e-01	ci left: 3.549756e-04	ci right 4.006705e-04	k: 1064	n:2820000
DPY19L1   2820000 perm   3611 sec   (781 perm/sec)   p_kst 3.773050e-04   p_cons 9.842791e-01   p_joint 8.751773e-04

Joint ci ratio: 7.896833e-02	ci left: 8.356041e-04	ci right 9.046464e-04	k: 2461	n:2830000
Cons ci ratio: 2.945712e-04	ci left: 9.841254e-01	ci right 9.844157e-01	k: 2785487	n:2830000
KS ci ratio: 1.198152e-01	ci left: 3.554351e-04	ci right 4.010744e-04	k: 1069	n:2830000
DPY19L1   2830000 perm   3634 sec   (779 perm/sec)   p_kst 3.777385e-04   p_cons 9.842710e-01   p_joint 8.696113e-04

Joint ci ratio: 7.885633e-02	ci left: 8.350780e-04	ci right 9.039745e-04	k: 2468	n:2840000
Cons ci ratio: 2.940311e-04	ci left: 9.841279e-01	ci right 9.844176e-01	k: 2795336	n:2840000
KS ci ratio: 1.195919e-01	ci left: 3.555498e-04	ci right 4.011128e-04	k: 1073	n:2840000
DPY19L1   2840000 perm   3657 sec   (776 perm/sec)   p_kst 3.778169e-04   p_cons 9.842732e-01   p_joint 8.690141e-04

Joint ci ratio: 7.879260e-02	ci left: 8.335237e-04	ci right 9.022338e-04	k: 2472	n:2850000
Cons ci ratio: 2.935438e-04	ci left: 9.841250e-01	ci right 9.844143e-01	k: 2805170	n:2850000
KS ci ratio: 1.194807e-01	ci left: 3.549830e-04	ci right 4.004281e-04	k: 1075	n:2850000
DPY19L1   2850000 perm   3680 sec   (774 perm/sec)   p_kst 3.771930e-04   p_cons 9.842702e-01   p_joint 8.673684e-04

Joint ci ratio: 7.876085e-02	ci left: 8.312948e-04	ci right 8.997923e-04	k: 2474	n:2860000
Cons ci ratio: 2.930954e-04	ci left: 9.841184e-01	ci right 9.844072e-01	k: 2814993	n:2860000
KS ci ratio: 1.194808e-01	ci left: 3.537418e-04	ci right 3.990281e-04	k: 1075	n:2860000
DPY19L1   2860000 perm   3703 sec   (772 perm/sec)   p_kst 3.758741e-04   p_cons 9.842633e-01   p_joint 8.650350e-04

Joint ci ratio: 7.861803e-02	ci left: 8.314725e-04	ci right 8.998547e-04	k: 2483	n:2870000
Cons ci ratio: 2.925337e-04	ci left: 9.841240e-01	ci right 9.844123e-01	k: 2824851	n:2870000
KS ci ratio: 1.193146e-01	ci left: 3.535234e-04	ci right 3.987142e-04	k: 1078	n:2870000
DPY19L1   2870000 perm   3727 sec   (770 perm/sec)   p_kst 3.756098e-04   p_cons 9.842686e-01   p_joint 8.651568e-04

Joint ci ratio: 8.010030e-02	ci left: 7.976146e-04	ci right 8.645067e-04	k: 2392	n:2880000
Cons ci ratio: 2.919818e-04	ci left: 9.841289e-01	ci right 9.844166e-01	k: 2834707	n:2880000
KS ci ratio: 1.190941e-01	ci left: 3.536433e-04	ci right 3.987601e-04	k: 1082	n:2880000
DPY19L1   2880000 perm   3751 sec   (768 perm/sec)   p_kst 3.756944e-04   p_cons 9.842733e-01   p_joint 8.305556e-04

Joint ci ratio: 7.990016e-02	ci left: 7.989239e-04	ci right 8.657506e-04	k: 2404	n:2890000
Cons ci ratio: 2.914818e-04	ci left: 9.841286e-01	ci right 9.844158e-01	k: 2844548	n:2890000
KS ci ratio: 1.186565e-01	ci left: 3.551055e-04	ci right 4.002307e-04	k: 1090	n:2890000
DPY19L1   2890000 perm   3775 sec   (766 perm/sec)   p_kst 3.771626e-04   p_cons 9.842727e-01   p_joint 8.318339e-04

Joint ci ratio: 7.981728e-02	ci left: 7.978587e-04	ci right 8.645239e-04	k: 2409	n:2900000
Cons ci ratio: 2.910525e-04	ci left: 9.841209e-01	ci right 9.844077e-01	k: 2854368	n:2900000
KS ci ratio: 1.184937e-01	ci left: 3.548848e-04	ci right 3.999157e-04	k: 1093	n:2900000
DPY19L1   2900000 perm   3799 sec   (763 perm/sec)   p_kst 3.768966e-04   p_cons 9.842648e-01   p_joint 8.306897e-04

Joint ci ratio: 7.966865e-02	ci left: 7.981480e-04	ci right 8.647074e-04	k: 2418	n:2910000
Cons ci ratio: 2.906024e-04	ci left: 9.841158e-01	ci right 9.844021e-01	k: 2864195	n:2910000
KS ci ratio: 1.180628e-01	ci left: 3.563331e-04	ci right 4.013719e-04	k: 1101	n:2910000
DPY19L1   2910000 perm   3824 sec   (761 perm/sec)   p_kst 3.783505e-04   p_cons 9.842595e-01   p_joint 8.309278e-04

Joint ci ratio: 7.957006e-02	ci left: 7.974285e-04	ci right 8.638418e-04	k: 2424	n:2920000
Cons ci ratio: 2.900774e-04	ci left: 9.841189e-01	ci right 9.844048e-01	k: 2874046	n:2920000
KS ci ratio: 1.180093e-01	ci left: 3.554451e-04	ci right 4.003499e-04	k: 1102	n:2920000
DPY19L1   2920000 perm   3848 sec   (759 perm/sec)   p_kst 3.773973e-04   p_cons 9.842623e-01   p_joint 8.301370e-04

Joint ci ratio: 7.289504e-02	ci left: 9.500583e-04	ci right 1.022265e-03	k: 2888	n:2930000
Cons ci ratio: 2.895903e-04	ci left: 9.841183e-01	ci right 9.844036e-01	k: 2883886	n:2930000
KS ci ratio: 1.177427e-01	ci left: 3.558882e-04	ci right 4.007403e-04	k: 1107	n:2930000
DPY19L1   2930000 perm   3872 sec   (757 perm/sec)   p_kst 3.778157e-04   p_cons 9.842614e-01   p_joint 9.856655e-04

Joint ci ratio: 7.278178e-02	ci left: 9.498323e-04	ci right 1.021905e-03	k: 2897	n:2940000
Cons ci ratio: 2.891184e-04	ci left: 9.841163e-01	ci right 9.844012e-01	k: 2893722	n:2940000
KS ci ratio: 1.176366e-01	ci left: 3.553379e-04	ci right 4.000775e-04	k: 1109	n:2940000
DPY19L1   2940000 perm   3896 sec   (755 perm/sec)   p_kst 3.772109e-04   p_cons 9.842592e-01   p_joint 9.853741e-04

Joint ci ratio: 7.265653e-02	ci left: 9.499407e-04	ci right 1.021892e-03	k: 2907	n:2950000
Cons ci ratio: 2.885919e-04	ci left: 9.841204e-01	ci right 9.844048e-01	k: 2903576	n:2950000
KS ci ratio: 1.174252e-01	ci left: 3.554495e-04	ci right 4.001171e-04	k: 1113	n:2950000
DPY19L1   2950000 perm   3921 sec   (752 perm/sec)   p_kst 3.772881e-04   p_cons 9.842631e-01   p_joint 9.854237e-04

Joint ci ratio: 7.455408e-02	ci left: 8.983139e-04	ci right 9.682089e-04	k: 2761	n:2960000
Cons ci ratio: 2.881437e-04	ci left: 9.841163e-01	ci right 9.844003e-01	k: 2913406	n:2960000
KS ci ratio: 1.172150e-01	ci left: 3.555603e-04	ci right 4.001564e-04	k: 1117	n:2960000
DPY19L1   2960000 perm   3946 sec   (750 perm/sec)   p_kst 3.773649e-04   p_cons 9.842588e-01   p_joint 9.327703e-04

Joint ci ratio: 7.441948e-02	ci left: 8.985935e-04	ci right 9.683787e-04	k: 2771	n:2970000
Cons ci ratio: 2.876068e-04	ci left: 9.841221e-01	ci right 9.844055e-01	k: 2923265	n:2970000
KS ci ratio: 1.168497e-01	ci left: 3.566511e-04	ci right 4.012349e-04	k: 1124	n:2970000
DPY19L1   2970000 perm   3971 sec   (748 perm/sec)   p_kst 3.784512e-04   p_cons 9.842643e-01   p_joint 9.329966e-04

Joint ci ratio: 7.428560e-02	ci left: 8.988714e-04	ci right 9.685471e-04	k: 2781	n:2980000
Cons ci ratio: 2.871725e-04	ci left: 9.841171e-01	ci right 9.844001e-01	k: 2933092	n:2980000
KS ci ratio: 1.165908e-01	ci left: 3.570831e-04	ci right 4.016153e-04	k: 1129	n:2980000
DPY19L1   2980000 perm   3996 sec   (746 perm/sec)   p_kst 3.788591e-04   p_cons 9.842591e-01   p_joint 9.332215e-04

Joint ci ratio: 7.415244e-02	ci left: 8.991476e-04	ci right 9.687144e-04	k: 2791	n:2990000
Cons ci ratio: 2.866999e-04	ci left: 9.841165e-01	ci right 9.843990e-01	k: 2942932	n:2990000
KS ci ratio: 1.163337e-01	ci left: 3.575124e-04	ci right 4.019930e-04	k: 1134	n:2990000
DPY19L1   2990000 perm   4021 sec   (744 perm/sec)   p_kst 3.792642e-04   p_cons 9.842582e-01   p_joint 9.334448e-04

Joint ci ratio: 7.398036e-02	ci left: 9.004035e-04	ci right 9.698989e-04	k: 2804	n:3000000
Cons ci ratio: 2.861896e-04	ci left: 9.841202e-01	ci right 9.844022e-01	k: 2952785	n:3000000
KS ci ratio: 1.159766e-01	ci left: 3.585862e-04	ci right 4.030541e-04	k: 1141	n:3000000
DPY19L1   3000000 perm   4046 sec   (742 perm/sec)   p_kst 3.803333e-04   p_cons 9.842617e-01   p_joint 9.346667e-04

Joint ci ratio: 7.404656e-02	ci left: 8.957817e-04	ci right 9.649849e-04	k: 2799	n:3010000
Cons ci ratio: 2.857371e-04	ci left: 9.841179e-01	ci right 9.843995e-01	k: 2962620	n:3010000
KS ci ratio: 1.157740e-01	ci left: 3.586853e-04	ci right 4.030824e-04	k: 1145	n:3010000
DPY19L1   3010000 perm   4073 sec   (739 perm/sec)   p_kst 3.803987e-04   p_cons 9.842591e-01   p_joint 9.299003e-04

Joint ci ratio: 7.392785e-02	ci left: 8.957405e-04	ci right 9.648248e-04	k: 2808	n:3020000
Cons ci ratio: 2.852746e-04	ci left: 9.841169e-01	ci right 9.843980e-01	k: 2972459	n:3020000
KS ci ratio: 1.156228e-01	ci left: 3.584622e-04	ci right 4.027699e-04	k: 1148	n:3020000
DPY19L1   3020000 perm   4098 sec   (737 perm/sec)   p_kst 3.801325e-04   p_cons 9.842579e-01   p_joint 9.298013e-04

Joint ci ratio: 7.403356e-02	ci left: 8.901928e-04	ci right 9.589516e-04	k: 2800	n:3030000
Cons ci ratio: 2.847809e-04	ci left: 9.841196e-01	ci right 9.844002e-01	k: 2982309	n:3030000
KS ci ratio: 1.154220e-01	ci left: 3.585612e-04	ci right 4.027988e-04	k: 1152	n:3030000
DPY19L1   3030000 perm   4123 sec   (735 perm/sec)   p_kst 3.801980e-04   p_cons 9.842604e-01   p_joint 9.240924e-04

Joint ci ratio: 7.392807e-02	ci left: 8.898474e-04	ci right 9.584774e-04	k: 2808	n:3040000
Cons ci ratio: 2.843200e-04	ci left: 9.841190e-01	ci right 9.843992e-01	k: 2992149	n:3040000
KS ci ratio: 1.153221e-01	ci left: 3.580206e-04	ci right 4.021507e-04	k: 1154	n:3040000
DPY19L1   3040000 perm   4149 sec   (733 perm/sec)   p_kst 3.796053e-04   p_cons 9.842595e-01   p_joint 9.236842e-04

Joint ci ratio: 7.383616e-02	ci left: 8.891825e-04	ci right 9.576723e-04	k: 2815	n:3050000
Cons ci ratio: 2.839184e-04	ci left: 9.841121e-01	ci right 9.843919e-01	k: 3001970	n:3050000
KS ci ratio: 1.150733e-01	ci left: 3.584389e-04	ci right 4.025187e-04	k: 1159	n:3050000
DPY19L1   3050000 perm   4174 sec   (731 perm/sec)   p_kst 3.800000e-04   p_cons 9.842525e-01   p_joint 9.229508e-04

Joint ci ratio: 7.371845e-02	ci left: 8.891636e-04	ci right 9.575381e-04	k: 2824	n:3060000
Cons ci ratio: 2.834228e-04	ci left: 9.841158e-01	ci right 9.843951e-01	k: 3011823	n:3060000
KS ci ratio: 1.148260e-01	ci left: 3.588545e-04	ci right 4.028843e-04	k: 1164	n:3060000
DPY19L1   3060000 perm   4200 sec   (729 perm/sec)   p_kst 3.803922e-04   p_cons 9.842559e-01   p_joint 9.228758e-04

Joint ci ratio: 7.218736e-02	ci left: 9.249627e-04	ci right 9.945509e-04	k: 2945	n:3070000
Cons ci ratio: 2.829595e-04	ci left: 9.841162e-01	ci right 9.843950e-01	k: 3021666	n:3070000
KS ci ratio: 1.146294e-01	ci left: 3.589512e-04	ci right 4.029122e-04	k: 1168	n:3070000
DPY19L1   3070000 perm   4225 sec   (727 perm/sec)   p_kst 3.804560e-04   p_cons 9.842560e-01   p_joint 9.592834e-04

Joint ci ratio: 7.212623e-02	ci left: 9.235537e-04	ci right 9.929745e-04	k: 2950	n:3080000
Cons ci ratio: 2.824807e-04	ci left: 9.841185e-01	ci right 9.843968e-01	k: 3031515	n:3080000
KS ci ratio: 1.145315e-01	ci left: 3.584165e-04	ci right 4.022721e-04	k: 1170	n:3080000
DPY19L1   3080000 perm   4251 sec   (725 perm/sec)   p_kst 3.798701e-04   p_cons 9.842581e-01   p_joint 9.577922e-04

Joint ci ratio: 7.194355e-02	ci left: 9.253318e-04	ci right 9.947027e-04	k: 2965	n:3090000
Cons ci ratio: 2.820131e-04	ci left: 9.841198e-01	ci right 9.843977e-01	k: 3041361	n:3090000
KS ci ratio: 1.142392e-01	ci left: 3.591427e-04	ci right 4.029675e-04	k: 1176	n:3090000
DPY19L1   3090000 perm   4277 sec   (722 perm/sec)   p_kst 3.805825e-04   p_cons 9.842592e-01   p_joint 9.595469e-04

Joint ci ratio: 7.187094e-02	ci left: 9.242475e-04	ci right 9.934643e-04	k: 2971	n:3100000
Cons ci ratio: 2.815596e-04	ci left: 9.841199e-01	ci right 9.843973e-01	k: 3051203	n:3100000
KS ci ratio: 1.141423e-01	ci left: 3.586109e-04	ci right 4.023312e-04	k: 1178	n:3100000
DPY19L1   3100000 perm   4303 sec   (720 perm/sec)   p_kst 3.800000e-04   p_cons 9.842590e-01   p_joint 9.583871e-04

Joint ci ratio: 7.173829e-02	ci left: 9.247491e-04	ci right 9.938704e-04	k: 2982	n:3110000
Cons ci ratio: 2.811200e-04	ci left: 9.841186e-01	ci right 9.843956e-01	k: 3061041	n:3110000
KS ci ratio: 1.138529e-01	ci left: 3.593321e-04	ci right 4.030217e-04	k: 1184	n:3110000
DPY19L1   3110000 perm   4328 sec   (719 perm/sec)   p_kst 3.807074e-04   p_cons 9.842576e-01   p_joint 9.588424e-04

Joint ci ratio: 7.163032e-02	ci left: 9.246181e-04	ci right 9.936212e-04	k: 2991	n:3120000
Cons ci ratio: 2.806243e-04	ci left: 9.841238e-01	ci right 9.844003e-01	k: 3070899	n:3120000
KS ci ratio: 1.138049e-01	ci left: 3.584918e-04	ci right 4.020596e-04	k: 1185	n:3120000
DPY19L1   3120000 perm   4354 sec   (717 perm/sec)   p_kst 3.798077e-04   p_cons 9.842625e-01   p_joint 9.586538e-04

Joint ci ratio: 7.157059e-02	ci left: 9.232329e-04	ci right 9.920728e-04	k: 2996	n:3130000
Cons ci ratio: 2.801688e-04	ci left: 9.841248e-01	ci right 9.844008e-01	k: 3080744	n:3130000
KS ci ratio: 1.136613e-01	ci left: 3.582776e-04	ci right 4.017608e-04	k: 1188	n:3130000
DPY19L1   3130000 perm   4380 sec   (715 perm/sec)   p_kst 3.795527e-04   p_cons 9.842633e-01   p_joint 9.571885e-04

Joint ci ratio: 7.145148e-02	ci left: 9.234204e-04	ci right 9.921549e-04	k: 3006	n:3140000
Cons ci ratio: 2.797241e-04	ci left: 9.841248e-01	ci right 9.844004e-01	k: 3090586	n:3140000
KS ci ratio: 1.134706e-01	ci left: 3.583743e-04	ci right 4.017914e-04	k: 1192	n:3140000
DPY19L1   3140000 perm   4406 sec   (713 perm/sec)   p_kst 3.796178e-04   p_cons 9.842631e-01   p_joint 9.573248e-04

Joint ci ratio: 7.133296e-02	ci left: 9.236068e-04	ci right 9.922365e-04	k: 3016	n:3150000
Cons ci ratio: 2.792759e-04	ci left: 9.841255e-01	ci right 9.844006e-01	k: 3100430	n:3150000
KS ci ratio: 1.132808e-01	ci left: 3.584705e-04	ci right 4.018217e-04	k: 1196	n:3150000
DPY19L1   3150000 perm   4432 sec   (711 perm/sec)   p_kst 3.796825e-04   p_cons 9.842635e-01   p_joint 9.574603e-04

Joint ci ratio: 7.123859e-02	ci left: 9.231705e-04	ci right 9.916733e-04	k: 3024	n:3160000
Cons ci ratio: 2.787927e-04	ci left: 9.841302e-01	ci right 9.844050e-01	k: 3110287	n:3160000
KS ci ratio: 1.130920e-01	ci left: 3.585661e-04	ci right 4.018517e-04	k: 1200	n:3160000
DPY19L1   3160000 perm   4459 sec   (709 perm/sec)   p_kst 3.797468e-04   p_cons 9.842680e-01   p_joint 9.569620e-04

Joint ci ratio: 7.108597e-02	ci left: 9.242863e-04	ci right 9.927189e-04	k: 3037	n:3170000
Cons ci ratio: 2.783545e-04	ci left: 9.841302e-01	ci right 9.844045e-01	k: 3120129	n:3170000
KS ci ratio: 1.127172e-01	ci left: 3.598873e-04	ci right 4.031790e-04	k: 1208	n:3170000
DPY19L1   3170000 perm   4485 sec   (707 perm/sec)   p_kst 3.810726e-04   p_cons 9.842678e-01   p_joint 9.580442e-04

Joint ci ratio: 7.099258e-02	ci left: 9.238508e-04	ci right 9.921575e-04	k: 3045	n:3180000
Cons ci ratio: 2.779128e-04	ci left: 9.841309e-01	ci right 9.844047e-01	k: 3129973	n:3180000
KS ci ratio: 1.125776e-01	ci left: 3.596724e-04	ci right 4.028811e-04	k: 1211	n:3180000
DPY19L1   3180000 perm   4511 sec   (705 perm/sec)   p_kst 3.808176e-04   p_cons 9.842682e-01   p_joint 9.575472e-04

Joint ci ratio: 7.089955e-02	ci left: 9.234181e-04	ci right 9.915996e-04	k: 3053	n:3190000
Cons ci ratio: 2.775181e-04	ci left: 9.841265e-01	ci right 9.843999e-01	k: 3139801	n:3190000
KS ci ratio: 1.123923e-01	ci left: 3.597636e-04	ci right 4.029073e-04	k: 1215	n:3190000
DPY19L1   3190000 perm   4537 sec   (703 perm/sec)   p_kst 3.808777e-04   p_cons 9.842636e-01   p_joint 9.570533e-04

Joint ci ratio: 7.106288e-02	ci left: 9.162349e-04	ci right 9.840484e-04	k: 3039	n:3200000
Cons ci ratio: 2.771250e-04	ci left: 9.841221e-01	ci right 9.843952e-01	k: 3149629	n:3200000
KS ci ratio: 1.123000e-01	ci left: 3.592467e-04	ci right 4.022908e-04	k: 1217	n:3200000
DPY19L1   3200000 perm   4564 sec   (701 perm/sec)   p_kst 3.803125e-04   p_cons 9.842591e-01   p_joint 9.496875e-04

Joint ci ratio: 7.107469e-02	ci left: 9.130745e-04	ci right 9.806658e-04	k: 3038	n:3210000
Cons ci ratio: 2.766390e-04	ci left: 9.841284e-01	ci right 9.844010e-01	k: 3159491	n:3210000
KS ci ratio: 1.120244e-01	ci left: 3.599443e-04	ci right 4.029591e-04	k: 1223	n:3210000
DPY19L1   3210000 perm   4591 sec   (699 perm/sec)   p_kst 3.809969e-04   p_cons 9.842651e-01   p_joint 9.464174e-04

Joint ci ratio: 7.099300e-02	ci left: 9.123742e-04	ci right 9.798328e-04	k: 3045	n:3220000
Cons ci ratio: 2.762054e-04	ci left: 9.841290e-01	ci right 9.844012e-01	k: 3169335	n:3220000
KS ci ratio: 1.119787e-01	ci left: 3.591283e-04	ci right 4.020269e-04	k: 1224	n:3220000
DPY19L1   3220000 perm   4618 sec   (697 perm/sec)   p_kst 3.801242e-04   p_cons 9.842655e-01   p_joint 9.456522e-04

Joint ci ratio: 7.086514e-02	ci left: 9.128947e-04	ci right 9.802652e-04	k: 3056	n:3230000
Cons ci ratio: 2.757489e-04	ci left: 9.841324e-01	ci right 9.844042e-01	k: 3179188	n:3230000
KS ci ratio: 1.117508e-01	ci left: 3.595212e-04	ci right 4.023736e-04	k: 1229	n:3230000
DPY19L1   3230000 perm   4645 sec   (695 perm/sec)   p_kst 3.804954e-04   p_cons 9.842687e-01   p_joint 9.461300e-04

Joint ci ratio: 7.071490e-02	ci left: 9.140185e-04	ci right 9.813230e-04	k: 3069	n:3240000
Cons ci ratio: 2.752948e-04	ci left: 9.841358e-01	ci right 9.844071e-01	k: 3189041	n:3240000
KS ci ratio: 1.115696e-01	ci left: 3.596116e-04	ci right 4.024007e-04	k: 1233	n:3240000
DPY19L1   3240000 perm   4671 sec   (694 perm/sec)   p_kst 3.805556e-04   p_cons 9.842719e-01   p_joint 9.472222e-04

Joint ci ratio: 7.061148e-02	ci left: 9.139264e-04	ci right 9.811217e-04	k: 3078	n:3250000
Cons ci ratio: 2.748537e-04	ci left: 9.841380e-01	ci right 9.844088e-01	k: 3198890	n:3250000
KS ci ratio: 1.114342e-01	ci left: 3.594025e-04	ci right 4.021113e-04	k: 1236	n:3250000
DPY19L1   3250000 perm   4698 sec   (692 perm/sec)   p_kst 3.803077e-04   p_cons 9.842738e-01   p_joint 9.470769e-04

Joint ci ratio: 7.050851e-02	ci left: 9.138350e-04	ci right 9.809216e-04	k: 3087	n:3260000
Cons ci ratio: 2.744447e-04	ci left: 9.841367e-01	ci right 9.844072e-01	k: 3208728	n:3260000
KS ci ratio: 1.114343e-01	ci left: 3.583000e-04	ci right 4.008779e-04	k: 1236	n:3260000
DPY19L1   3260000 perm   4725 sec   (690 perm/sec)   p_kst 3.791411e-04   p_cons 9.842724e-01   p_joint 9.469325e-04

Joint ci ratio: 7.037189e-02	ci left: 9.146455e-04	ci right 9.816562e-04	k: 3099	n:3270000
Cons ci ratio: 2.740538e-04	ci left: 9.841337e-01	ci right 9.844037e-01	k: 3218560	n:3270000
KS ci ratio: 1.112994e-01	ci left: 3.580961e-04	ci right 4.005949e-04	k: 1239	n:3270000
DPY19L1   3270000 perm   4753 sec   (688 perm/sec)   p_kst 3.788991e-04   p_cons 9.842691e-01   p_joint 9.477064e-04

Joint ci ratio: 7.023605e-02	ci left: 9.154511e-04	ci right 9.823861e-04	k: 3111	n:3280000
Cons ci ratio: 2.735918e-04	ci left: 9.841389e-01	ci right 9.844085e-01	k: 3228419	n:3280000
KS ci ratio: 1.111650e-01	ci left: 3.578936e-04	ci right 4.003137e-04	k: 1242	n:3280000
DPY19L1   3280000 perm   4780 sec   (686 perm/sec)   p_kst 3.786585e-04   p_cons 9.842741e-01   p_joint 9.484756e-04

Joint ci ratio: 7.053169e-02	ci left: 9.049048e-04	ci right 9.713586e-04	k: 3085	n:3290000
Cons ci ratio: 2.732393e-04	ci left: 9.841318e-01	ci right 9.844011e-01	k: 3238238	n:3290000
KS ci ratio: 1.110757e-01	ci left: 3.573967e-04	ci right 3.997217e-04	k: 1244	n:3290000
DPY19L1   3290000 perm   4807 sec   (684 perm/sec)   p_kst 3.781155e-04   p_cons 9.842669e-01   p_joint 9.376900e-04

Joint ci ratio: 7.061199e-02	ci left: 9.000788e-04	ci right 9.662565e-04	k: 3078	n:3300000
Cons ci ratio: 2.728455e-04	ci left: 9.841297e-01	ci right 9.843985e-01	k: 3248073	n:3300000
KS ci ratio: 1.108533e-01	ci left: 3.577868e-04	ci right 4.000676e-04	k: 1249	n:3300000
DPY19L1   3300000 perm   4835 sec   (682 perm/sec)   p_kst 3.784848e-04   p_cons 9.842645e-01   p_joint 9.327273e-04

Joint ci ratio: 7.052045e-02	ci left: 8.997338e-04	ci right 9.657969e-04	k: 3086	n:3310000
Cons ci ratio: 2.724321e-04	ci left: 9.841300e-01	ci right 9.843984e-01	k: 3257916	n:3310000
KS ci ratio: 1.107206e-01	ci left: 3.575871e-04	ci right 3.997904e-04	k: 1252	n:3310000
DPY19L1   3310000 perm   4863 sec   (681 perm/sec)   p_kst 3.782477e-04   p_cons 9.842647e-01   p_joint 9.323263e-04

Joint ci ratio: 7.039512e-02	ci left: 9.002786e-04	ci right 9.662594e-04	k: 3097	n:3320000
Cons ci ratio: 2.720046e-04	ci left: 9.841321e-01	ci right 9.844002e-01	k: 3267765	n:3320000
KS ci ratio: 1.105003e-01	ci left: 3.579744e-04	ci right 4.001339e-04	k: 1257	n:3320000
DPY19L1   3320000 perm   4891 sec   (679 perm/sec)   p_kst 3.786145e-04   p_cons 9.842666e-01   p_joint 9.328313e-04

Joint ci ratio: 7.031575e-02	ci left: 8.996402e-04	ci right 9.654969e-04	k: 3104	n:3330000
Cons ci ratio: 2.715924e-04	ci left: 9.841327e-01	ci right 9.844004e-01	k: 3277609	n:3330000
KS ci ratio: 1.102813e-01	ci left: 3.583595e-04	ci right 4.004752e-04	k: 1262	n:3330000
DPY19L1   3330000 perm   4918 sec   (677 perm/sec)   p_kst 3.789790e-04   p_cons 9.842670e-01   p_joint 9.321321e-04

Joint ci ratio: 7.019151e-02	ci left: 9.001822e-04	ci right 9.659574e-04	k: 3115	n:3340000
Cons ci ratio: 2.711846e-04	ci left: 9.841330e-01	ci right 9.844003e-01	k: 3287452	n:3340000
KS ci ratio: 1.100203e-01	ci left: 3.590335e-04	ci right 4.011221e-04	k: 1268	n:3340000
DPY19L1   3340000 perm   4946 sec   (675 perm/sec)   p_kst 3.796407e-04   p_cons 9.842671e-01   p_joint 9.326347e-04

Joint ci ratio: 7.007914e-02	ci left: 9.004279e-04	ci right 9.661113e-04	k: 3125	n:3350000
Cons ci ratio: 2.707631e-04	ci left: 9.841351e-01	ci right 9.844019e-01	k: 3297301	n:3350000
KS ci ratio: 1.098041e-01	ci left: 3.594132e-04	ci right 4.014582e-04	k: 1273	n:3350000
DPY19L1   3350000 perm   4974 sec   (673 perm/sec)   p_kst 3.800000e-04   p_cons 9.842690e-01   p_joint 9.328358e-04

Joint ci ratio: 6.997848e-02	ci left: 9.003797e-04	ci right 9.659615e-04	k: 3134	n:3360000
Cons ci ratio: 2.703720e-04	ci left: 9.841339e-01	ci right 9.844003e-01	k: 3307139	n:3360000
KS ci ratio: 1.096751e-01	ci left: 3.592119e-04	ci right 4.011808e-04	k: 1276	n:3360000
DPY19L1   3360000 perm   5002 sec   (672 perm/sec)   p_kst 3.797619e-04   p_cons 9.842676e-01   p_joint 9.327381e-04

Joint ci ratio: 6.986713e-02	ci left: 9.006234e-04	ci right 9.661144e-04	k: 3144	n:3370000
Cons ci ratio: 2.699309e-04	ci left: 9.841387e-01	ci right 9.844047e-01	k: 3316997	n:3370000
KS ci ratio: 1.094610e-01	ci left: 3.595890e-04	ci right 4.015147e-04	k: 1281	n:3370000
DPY19L1   3370000 perm   5030 sec   (670 perm/sec)   p_kst 3.801187e-04   p_cons 9.842721e-01   p_joint 9.329377e-04

Joint ci ratio: 6.980062e-02	ci left: 8.997030e-04	ci right 9.650622e-04	k: 3150	n:3380000
Cons ci ratio: 2.695280e-04	ci left: 9.841393e-01	ci right 9.844049e-01	k: 3326841	n:3380000
KS ci ratio: 1.093757e-01	ci left: 3.591007e-04	ci right 4.009346e-04	k: 1283	n:3380000
DPY19L1   3380000 perm   5058 sec   (668 perm/sec)   p_kst 3.795858e-04   p_cons 9.842725e-01   p_joint 9.319527e-04

Joint ci ratio: 6.973429e-02	ci left: 8.987880e-04	ci right 9.640162e-04	k: 3156	n:3390000
Cons ci ratio: 2.691090e-04	ci left: 9.841419e-01	ci right 9.844071e-01	k: 3336692	n:3390000
KS ci ratio: 1.092907e-01	ci left: 3.586152e-04	ci right 4.003581e-04	k: 1285	n:3390000
DPY19L1   3390000 perm   5085 sec   (667 perm/sec)   p_kst 3.790560e-04   p_cons 9.842749e-01   p_joint 9.309735e-04

Joint ci ratio: 6.966815e-02	ci left: 8.978785e-04	ci right 9.629763e-04	k: 3162	n:3400000
Cons ci ratio: 2.686893e-04	ci left: 9.841449e-01	ci right 9.844096e-01	k: 3346544	n:3400000
KS ci ratio: 1.091211e-01	ci left: 3.587048e-04	ci right 4.003891e-04	k: 1289	n:3400000
DPY19L1   3400000 perm   5114 sec   (665 perm/sec)   p_kst 3.791176e-04   p_cons 9.842776e-01   p_joint 9.300000e-04

Joint ci ratio: 6.953635e-02	ci left: 8.987032e-04	ci right 9.637326e-04	k: 3174	n:3410000
Cons ci ratio: 2.682716e-04	ci left: 9.841478e-01	ci right 9.844121e-01	k: 3356396	n:3410000
KS ci ratio: 1.089523e-01	ci left: 3.587939e-04	ci right 4.004200e-04	k: 1293	n:3410000
DPY19L1   3410000 perm   5142 sec   (663 perm/sec)   p_kst 3.791789e-04   p_cons 9.842804e-01   p_joint 9.307918e-04

Joint ci ratio: 6.943800e-02	ci left: 8.986613e-04	ci right 9.635920e-04	k: 3183	n:3420000
Cons ci ratio: 2.678735e-04	ci left: 9.841486e-01	ci right 9.844126e-01	k: 3366241	n:3420000
KS ci ratio: 1.087424e-01	ci left: 3.591670e-04	ci right 4.007509e-04	k: 1298	n:3420000
DPY19L1   3420000 perm   5170 sec   (661 perm/sec)   p_kst 3.795322e-04   p_cons 9.842810e-01   p_joint 9.307018e-04

Joint ci ratio: 6.823665e-02	ci left: 9.284193e-04	ci right 9.942937e-04	k: 3296	n:3430000
Cons ci ratio: 2.675125e-04	ci left: 9.841453e-01	ci right 9.844089e-01	k: 3376072	n:3430000
KS ci ratio: 1.086588e-01	ci left: 3.586871e-04	ci right 4.001815e-04	k: 1300	n:3430000
DPY19L1   3430000 perm   5199 sec   (660 perm/sec)   p_kst 3.790087e-04   p_cons 9.842776e-01   p_joint 9.609329e-04

Joint ci ratio: 6.820569e-02	ci left: 9.265776e-04	ci right 9.922903e-04	k: 3299	n:3440000
Cons ci ratio: 2.671053e-04	ci left: 9.841476e-01	ci right 9.844108e-01	k: 3385922	n:3440000
KS ci ratio: 1.085754e-01	ci left: 3.582100e-04	ci right 3.996154e-04	k: 1302	n:3440000
DPY19L1   3440000 perm   5229 sec   (658 perm/sec)   p_kst 3.784884e-04   p_cons 9.842797e-01   p_joint 9.590116e-04

Joint ci ratio: 6.815413e-02	ci left: 9.253165e-04	ci right 9.908881e-04	k: 3304	n:3450000
Cons ci ratio: 2.667224e-04	ci left: 9.841473e-01	ci right 9.844101e-01	k: 3395763	n:3450000
KS ci ratio: 1.084507e-01	ci left: 3.580177e-04	ci right 3.993502e-04	k: 1305	n:3450000
DPY19L1   3450000 perm   5258 sec   (656 perm/sec)   p_kst 3.782609e-04   p_cons 9.842791e-01   p_joint 9.576812e-04

Joint ci ratio: 6.806152e-02	ci left: 9.251990e-04	ci right 9.906697e-04	k: 3313	n:3460000
Cons ci ratio: 2.663461e-04	ci left: 9.841464e-01	ci right 9.844088e-01	k: 3405602	n:3460000
KS ci ratio: 1.081611e-01	ci left: 3.589513e-04	ci right 4.002739e-04	k: 1312	n:3460000
DPY19L1   3460000 perm   5287 sec   (654 perm/sec)   p_kst 3.791908e-04   p_cons 9.842780e-01   p_joint 9.575145e-04

Joint ci ratio: 6.796930e-02	ci left: 9.250823e-04	ci right 9.904525e-04	k: 3322	n:3470000
Cons ci ratio: 2.659367e-04	ci left: 9.841496e-01	ci right 9.844116e-01	k: 3415455	n:3470000
KS ci ratio: 1.080378e-01	ci left: 3.587580e-04	ci right 4.000083e-04	k: 1315	n:3470000
DPY19L1   3470000 perm   5316 sec   (653 perm/sec)   p_kst 3.789625e-04   p_cons 9.842810e-01   p_joint 9.573487e-04

Joint ci ratio: 6.789785e-02	ci left: 9.244013e-04	ci right 9.896521e-04	k: 3329	n:3480000
Cons ci ratio: 2.655612e-04	ci left: 9.841489e-01	ci right 9.844106e-01	k: 3425295	n:3480000
KS ci ratio: 1.078331e-01	ci left: 3.591251e-04	ci right 4.003344e-04	k: 1320	n:3480000
DPY19L1   3480000 perm   5344 sec   (651 perm/sec)   p_kst 3.793103e-04   p_cons 9.842802e-01   p_joint 9.566092e-04

Joint ci ratio: 6.573980e-02	ci left: 9.843014e-04	ci right 1.051488e-03	k: 3551	n:3490000
Cons ci ratio: 2.652267e-04	ci left: 9.841437e-01	ci right 9.844051e-01	k: 3435119	n:3490000
KS ci ratio: 1.104135e-01	ci left: 3.410943e-04	ci right 3.812322e-04	k: 1259	n:3490000
DPY19L1   3490000 perm   5374 sec   (649 perm/sec)   p_kst 3.607450e-04   p_cons 9.842748e-01   p_joint 1.017479e-03

Joint ci ratio: 6.561060e-02	ci left: 9.854234e-04	ci right 1.052549e-03	k: 3565	n:3500000
Cons ci ratio: 2.649006e-04	ci left: 9.841377e-01	ci right 9.843987e-01	k: 3444940	n:3500000
KS ci ratio: 1.102387e-01	ci left: 3.412311e-04	ci right 3.813174e-04	k: 1263	n:3500000
DPY19L1   3500000 perm   5403 sec   (648 perm/sec)   p_kst 3.608571e-04   p_cons 9.842686e-01   p_joint 1.018571e-03

Joint ci ratio: 6.565678e-02	ci left: 9.812147e-04	ci right 1.048103e-03	k: 3560	n:3510000
Cons ci ratio: 2.645174e-04	ci left: 9.841385e-01	ci right 9.843991e-01	k: 3454785	n:3510000
KS ci ratio: 1.101516e-01	ci left: 3.408130e-04	ci right 3.808165e-04	k: 1265	n:3510000
DPY19L1   3510000 perm   5433 sec   (646 perm/sec)   p_kst 3.603989e-04   p_cons 9.842692e-01   p_joint 1.014245e-03

Joint ci ratio: 6.687091e-02	ci left: 9.426654e-04	ci right 1.008160e-03	k: 3432	n:3520000
Cons ci ratio: 2.641164e-04	ci left: 9.841416e-01	ci right 9.844019e-01	k: 3464638	n:3520000
KS ci ratio: 1.100213e-01	ci left: 3.406736e-04	ci right 3.806104e-04	k: 1268	n:3520000
DPY19L1   3520000 perm   5463 sec   (644 perm/sec)   p_kst 3.602273e-04   p_cons 9.842722e-01   p_joint 9.750000e-04

Joint ci ratio: 6.677372e-02	ci left: 9.427805e-04	ci right 1.008184e-03	k: 3442	n:3530000
Cons ci ratio: 2.637534e-04	ci left: 9.841405e-01	ci right 9.844004e-01	k: 3474476	n:3530000
KS ci ratio: 1.098915e-01	ci left: 3.405350e-04	ci right 3.804054e-04	k: 1271	n:3530000
DPY19L1   3530000 perm   5493 sec   (643 perm/sec)   p_kst 3.600567e-04   p_cons 9.842708e-01   p_joint 9.750708e-04

Joint ci ratio: 6.677382e-02	ci left: 9.401172e-04	ci right 1.005336e-03	k: 3442	n:3540000
Cons ci ratio: 2.634063e-04	ci left: 9.841376e-01	ci right 9.843972e-01	k: 3484308	n:3540000
KS ci ratio: 1.097191e-01	ci left: 3.406720e-04	ci right 3.804917e-04	k: 1275	n:3540000
DPY19L1   3540000 perm   5523 sec   (641 perm/sec)   p_kst 3.601695e-04   p_cons 9.842678e-01   p_joint 9.723164e-04

Joint ci ratio: 6.670607e-02	ci left: 9.394079e-04	ci right 1.004509e-03	k: 3449	n:3550000
Cons ci ratio: 2.630319e-04	ci left: 9.841382e-01	ci right 9.843974e-01	k: 3494152	n:3550000
KS ci ratio: 1.096762e-01	ci left: 3.399863e-04	ci right 3.797094e-04	k: 1276	n:3550000
DPY19L1   3550000 perm   5553 sec   (639 perm/sec)   p_kst 3.594366e-04   p_cons 9.842682e-01   p_joint 9.715493e-04

Joint ci ratio: 6.690054e-02	ci left: 9.312449e-04	ci right 9.959758e-04	k: 3429	n:3560000
Cons ci ratio: 2.626877e-04	ci left: 9.841354e-01	ci right 9.843942e-01	k: 3503984	n:3560000
KS ci ratio: 1.095476e-01	ci left: 3.398509e-04	ci right 3.795085e-04	k: 1279	n:3560000
DPY19L1   3560000 perm   5583 sec   (638 perm/sec)   p_kst 3.592697e-04   p_cons 9.842652e-01   p_joint 9.632022e-04

Joint ci ratio: 6.678380e-02	ci left: 9.319415e-04	ci right 9.966034e-04	k: 3441	n:3570000
Cons ci ratio: 2.622926e-04	ci left: 9.841387e-01	ci right 9.843972e-01	k: 3513838	n:3570000
KS ci ratio: 1.095049e-01	ci left: 3.391713e-04	ci right 3.787333e-04	k: 1280	n:3570000
DPY19L1   3570000 perm   5612 sec   (636 perm/sec)   p_kst 3.585434e-04   p_cons 9.842683e-01   p_joint 9.638655e-04

Joint ci ratio: 6.669666e-02	ci left: 9.318103e-04	ci right 9.963755e-04	k: 3450	n:3580000
Cons ci ratio: 2.619701e-04	ci left: 9.841337e-01	ci right 9.843918e-01	k: 3523662	n:3580000
KS ci ratio: 1.093343e-01	ci left: 3.393107e-04	ci right 3.788233e-04	k: 1284	n:3580000
DPY19L1   3580000 perm   5641 sec   (635 perm/sec)   p_kst 3.586592e-04   p_cons 9.842631e-01   p_joint 9.636872e-04

Joint ci ratio: 6.652332e-02	ci left: 9.341452e-04	ci right 9.986975e-04	k: 3468	n:3590000
Cons ci ratio: 2.616112e-04	ci left: 9.841331e-01	ci right 9.843909e-01	k: 3533502	n:3590000
KS ci ratio: 1.089533e-01	ci left: 3.408041e-04	ci right 3.803434e-04	k: 1293	n:3590000
DPY19L1   3590000 perm   5672 sec   (633 perm/sec)   p_kst 3.601671e-04   p_cons 9.842624e-01   p_joint 9.660167e-04

Joint ci ratio: 6.644676e-02	ci left: 9.337356e-04	ci right 9.981825e-04	k: 3476	n:3600000
Cons ci ratio: 2.612959e-04	ci left: 9.841275e-01	ci right 9.843850e-01	k: 3543324	n:3600000
KS ci ratio: 1.087853e-01	ci left: 3.409382e-04	ci right 3.804282e-04	k: 1297	n:3600000
DPY19L1   3600000 perm   5702 sec   (631 perm/sec)   p_kst 3.602778e-04   p_cons 9.842567e-01   p_joint 9.655556e-04

Joint ci ratio: 6.442879e-02	ci left: 9.913674e-04	ci right 1.057637e-03	k: 3697	n:3610000
Cons ci ratio: 2.609630e-04	ci left: 9.841242e-01	ci right 9.843814e-01	k: 3553154	n:3610000
KS ci ratio: 1.085347e-01	ci left: 3.416107e-04	ci right 3.810816e-04	k: 1303	n:3610000
DPY19L1   3610000 perm   5731 sec   (630 perm/sec)   p_kst 3.609418e-04   p_cons 9.842532e-01   p_joint 1.024100e-03

Joint ci ratio: 6.432450e-02	ci left: 9.918904e-04	ci right 1.058083e-03	k: 3709	n:3620000
Cons ci ratio: 2.605594e-04	ci left: 9.841295e-01	ci right 9.843863e-01	k: 3563015	n:3620000
KS ci ratio: 1.084101e-01	ci left: 3.414733e-04	ci right 3.808801e-04	k: 1306	n:3620000
DPY19L1   3620000 perm   5761 sec   (628 perm/sec)   p_kst 3.607735e-04   p_cons 9.842583e-01   p_joint 1.024586e-03

Joint ci ratio: 6.425528e-02	ci left: 9.913264e-04	ci right 1.057408e-03	k: 3717	n:3630000
Cons ci ratio: 2.601947e-04	ci left: 9.841304e-01	ci right 9.843868e-01	k: 3572860	n:3630000
KS ci ratio: 1.082446e-01	ci left: 3.416046e-04	ci right 3.809626e-04	k: 1310	n:3630000
DPY19L1   3630000 perm   5791 sec   (627 perm/sec)   p_kst 3.608815e-04   p_cons 9.842590e-01   p_joint 1.023967e-03

Joint ci ratio: 6.417766e-02	ci left: 9.910358e-04	ci right 1.057015e-03	k: 3726	n:3640000
Cons ci ratio: 2.598568e-04	ci left: 9.841282e-01	ci right 9.843842e-01	k: 3582694	n:3640000
KS ci ratio: 1.079567e-01	ci left: 3.425373e-04	ci right 3.818911e-04	k: 1317	n:3640000
DPY19L1   3640000 perm   5821 sec   (625 perm/sec)   p_kst 3.618132e-04   p_cons 9.842566e-01   p_joint 1.023626e-03

Joint ci ratio: 6.410032e-02	ci left: 9.907468e-04	ci right 1.056624e-03	k: 3735	n:3650000
Cons ci ratio: 2.594904e-04	ci left: 9.841296e-01	ci right 9.843853e-01	k: 3592541	n:3650000
KS ci ratio: 1.078341e-01	ci left: 3.423985e-04	ci right 3.816889e-04	k: 1320	n:3650000
DPY19L1   3650000 perm   5851 sec   (624 perm/sec)   p_kst 3.616438e-04   p_cons 9.842578e-01   p_joint 1.023288e-03

Joint ci ratio: 6.401471e-02	ci left: 9.907283e-04	ci right 1.056513e-03	k: 3745	n:3660000
Cons ci ratio: 2.591461e-04	ci left: 9.841285e-01	ci right 9.843838e-01	k: 3602379	n:3660000
KS ci ratio: 1.076712e-01	ci left: 3.425265e-04	ci right 3.817683e-04	k: 1324	n:3660000
DPY19L1   3660000 perm   5881 sec   (622 perm/sec)   p_kst 3.617486e-04   p_cons 9.842566e-01   p_joint 1.023224e-03

Joint ci ratio: 6.395501e-02	ci left: 9.899056e-04	ci right 1.055572e-03	k: 3752	n:3670000
Cons ci ratio: 2.588737e-04	ci left: 9.841190e-01	ci right 9.843740e-01	k: 3612186	n:3670000
KS ci ratio: 1.075495e-01	ci left: 3.423886e-04	ci right 3.815675e-04	k: 1327	n:3670000
DPY19L1   3670000 perm   5911 sec   (621 perm/sec)   p_kst 3.615804e-04   p_cons 9.842469e-01   p_joint 1.022343e-03

Joint ci ratio: 6.384450e-02	ci left: 9.906918e-04	ci right 1.056293e-03	k: 3765	n:3680000
Cons ci ratio: 2.584956e-04	ci left: 9.841223e-01	ci right 9.843770e-01	k: 3622040	n:3680000
KS ci ratio: 1.074282e-01	ci left: 3.422515e-04	ci right 3.813678e-04	k: 1330	n:3680000
DPY19L1   3680000 perm   5942 sec   (619 perm/sec)   p_kst 3.614130e-04   p_cons 9.842500e-01   p_joint 1.023098e-03

Joint ci ratio: 6.384459e-02	ci left: 9.880070e-04	ci right 1.053430e-03	k: 3765	n:3690000
Cons ci ratio: 2.581621e-04	ci left: 9.841204e-01	ci right 9.843748e-01	k: 3631875	n:3690000
KS ci ratio: 1.072270e-01	ci left: 3.426426e-04	ci right 3.817257e-04	k: 1335	n:3690000
DPY19L1   3690000 perm   5972 sec   (618 perm/sec)   p_kst 3.617886e-04   p_cons 9.842480e-01   p_joint 1.020325e-03

Joint ci ratio: 6.377691e-02	ci left: 9.874644e-04	ci right 1.052780e-03	k: 3773	n:3700000
Cons ci ratio: 2.578253e-04	ci left: 9.841191e-01	ci right 9.843731e-01	k: 3641712	n:3700000
KS ci ratio: 1.071068e-01	ci left: 3.425056e-04	ci right 3.815265e-04	k: 1338	n:3700000
DPY19L1   3700000 perm   6003 sec   (616 perm/sec)   p_kst 3.616216e-04   p_cons 9.842465e-01   p_joint 1.019730e-03

Joint ci ratio: 6.392979e-02	ci left: 9.800283e-04	ci right 1.045013e-03	k: 3755	n:3710000
Cons ci ratio: 2.574808e-04	ci left: 9.841189e-01	ci right 9.843726e-01	k: 3651553	n:3710000
KS ci ratio: 1.068279e-01	ci left: 3.434188e-04	ci right 3.824354e-04	k: 1345	n:3710000
DPY19L1   3710000 perm   6033 sec   (615 perm/sec)   p_kst 3.625337e-04   p_cons 9.842461e-01   p_joint 1.012129e-03

Joint ci ratio: 6.408377e-02	ci left: 9.726324e-04	ci right 1.037288e-03	k: 3737	n:3720000
Cons ci ratio: 2.571578e-04	ci left: 9.841162e-01	ci right 9.843696e-01	k: 3661385	n:3720000
KS ci ratio: 1.067883e-01	ci left: 3.427572e-04	ci right 3.816833e-04	k: 1346	n:3720000
DPY19L1   3720000 perm   6063 sec   (614 perm/sec)   p_kst 3.618280e-04   p_cons 9.842433e-01   p_joint 1.004570e-03

Joint ci ratio: 6.427347e-02	ci left: 9.642212e-04	ci right 1.028515e-03	k: 3715	n:3730000
Cons ci ratio: 2.567783e-04	ci left: 9.841206e-01	ci right 9.843736e-01	k: 3671243	n:3730000
KS ci ratio: 1.066301e-01	ci left: 3.428821e-04	ci right 3.817610e-04	k: 1350	n:3730000
DPY19L1   3730000 perm   6094 sec   (612 perm/sec)   p_kst 3.619303e-04   p_cons 9.842475e-01   p_joint 9.959786e-04

Joint ci ratio: 6.434292e-02	ci left: 9.595384e-04	ci right 1.023591e-03	k: 3707	n:3740000
Cons ci ratio: 2.564734e-04	ci left: 9.841161e-01	ci right 9.843688e-01	k: 3681068	n:3740000
KS ci ratio: 1.065907e-01	ci left: 3.422255e-04	ci right 3.810148e-04	k: 1351	n:3740000
DPY19L1   3740000 perm   6126 sec   (611 perm/sec)   p_kst 3.612299e-04   p_cons 9.842428e-01   p_joint 9.911765e-04

Joint ci ratio: 6.423040e-02	ci left: 9.603906e-04	ci right 1.024384e-03	k: 3720	n:3750000
Cons ci ratio: 2.561454e-04	ci left: 9.841145e-01	ci right 9.843669e-01	k: 3690904	n:3750000
KS ci ratio: 1.064726e-01	ci left: 3.420916e-04	ci right 3.808201e-04	k: 1354	n:3750000
DPY19L1   3750000 perm   6157 sec   (609 perm/sec)   p_kst 3.610667e-04   p_cons 9.842411e-01   p_joint 9.920000e-04

Joint ci ratio: 6.412706e-02	ci left: 9.609766e-04	ci right 1.024902e-03	k: 3732	n:3760000
Cons ci ratio: 2.557923e-04	ci left: 9.841162e-01	ci right 9.843682e-01	k: 3700752	n:3760000
KS ci ratio: 1.062376e-01	ci left: 3.427351e-04	ci right 3.814454e-04	k: 1360	n:3760000
DPY19L1   3760000 perm   6188 sec   (608 perm/sec)   p_kst 3.617021e-04   p_cons 9.842426e-01   p_joint 9.925532e-04

Joint ci ratio: 6.404990e-02	ci left: 9.607766e-04	ci right 1.024609e-03	k: 3741	n:3770000
Cons ci ratio: 2.554494e-04	ci left: 9.841168e-01	ci right 9.843684e-01	k: 3710596	n:3770000
KS ci ratio: 1.060430e-01	ci left: 3.431170e-04	ci right 3.817951e-04	k: 1365	n:3770000
DPY19L1   3770000 perm   6219 sec   (606 perm/sec)   p_kst 3.620690e-04   p_cons 9.842430e-01   p_joint 9.923077e-04

Joint ci ratio: 6.393039e-02	ci left: 9.618794e-04	ci right 1.025662e-03	k: 3755	n:3780000
Cons ci ratio: 2.550687e-04	ci left: 9.841221e-01	ci right 9.843734e-01	k: 3720458	n:3780000
KS ci ratio: 1.058108e-01	ci left: 3.437546e-04	ci right 3.824144e-04	k: 1371	n:3780000
DPY19L1   3780000 perm   6251 sec   (605 perm/sec)   p_kst 3.626984e-04   p_cons 9.842481e-01   p_joint 9.933862e-04

Joint ci ratio: 6.382001e-02	ci left: 9.627167e-04	ci right 1.026440e-03	k: 3768	n:3790000
Cons ci ratio: 2.547481e-04	ci left: 9.841203e-01	ci right 9.843713e-01	k: 3730293	n:3790000
KS ci ratio: 1.056185e-01	ci left: 3.441319e-04	ci right 3.827595e-04	k: 1376	n:3790000
DPY19L1   3790000 perm   6282 sec   (603 perm/sec)   p_kst 3.630607e-04   p_cons 9.842462e-01   p_joint 9.941953e-04

Joint ci ratio: 6.371864e-02	ci left: 9.632908e-04	ci right 1.026947e-03	k: 3780	n:3800000
Cons ci ratio: 2.544180e-04	ci left: 9.841198e-01	ci right 9.843705e-01	k: 3740133	n:3800000
KS ci ratio: 1.055419e-01	ci left: 3.437388e-04	ci right 3.822924e-04	k: 1378	n:3800000
DPY19L1   3800000 perm   6314 sec   (602 perm/sec)   p_kst 3.626316e-04   p_cons 9.842455e-01   p_joint 9.947368e-04

Joint ci ratio: 6.365135e-02	ci left: 9.628288e-04	ci right 1.026385e-03	k: 3788	n:3810000
Cons ci ratio: 2.540720e-04	ci left: 9.841215e-01	ci right 9.843718e-01	k: 3749981	n:3810000
KS ci ratio: 1.055037e-01	ci left: 3.430921e-04	ci right 3.815584e-04	k: 1379	n:3810000
DPY19L1   3810000 perm   6346 sec   (600 perm/sec)   p_kst 3.619423e-04   p_cons 9.842470e-01   p_joint 9.942257e-04

Joint ci ratio: 6.358428e-02	ci left: 9.623692e-04	ci right 1.025826e-03	k: 3796	n:3820000
Cons ci ratio: 2.537702e-04	ci left: 9.841178e-01	ci right 9.843678e-01	k: 3759809	n:3820000
KS ci ratio: 1.053892e-01	ci left: 3.429586e-04	ci right 3.813656e-04	k: 1382	n:3820000
DPY19L1   3820000 perm   6377 sec   (599 perm/sec)   p_kst 3.617801e-04   p_cons 9.842432e-01   p_joint 9.937173e-04

Joint ci ratio: 6.351742e-02	ci left: 9.619121e-04	ci right 1.025269e-03	k: 3804	n:3830000
Cons ci ratio: 2.533628e-04	ci left: 9.841273e-01	ci right 9.843769e-01	k: 3769687	n:3830000
KS ci ratio: 1.052751e-01	ci left: 3.428258e-04	ci right 3.811738e-04	k: 1385	n:3830000
DPY19L1   3830000 perm   6409 sec   (598 perm/sec)   p_kst 3.616188e-04   p_cons 9.842525e-01   p_joint 9.932115e-04

Joint ci ratio: 6.340085e-02	ci left: 9.629951e-04	ci right 1.026303e-03	k: 3818	n:3840000
Cons ci ratio: 2.530040e-04	ci left: 9.841310e-01	ci right 9.843803e-01	k: 3779543	n:3840000
KS ci ratio: 1.051614e-01	ci left: 3.426937e-04	ci right 3.809830e-04	k: 1388	n:3840000
DPY19L1   3840000 perm   6440 sec   (596 perm/sec)   p_kst 3.614583e-04   p_cons 9.842560e-01   p_joint 9.942708e-04

Joint ci ratio: 6.334285e-02	ci left: 9.622832e-04	ci right 1.025484e-03	k: 3825	n:3850000
Cons ci ratio: 2.526214e-04	ci left: 9.841378e-01	ci right 9.843867e-01	k: 3789411	n:3850000
KS ci ratio: 1.051236e-01	ci left: 3.420565e-04	ci right 3.802600e-04	k: 1389	n:3850000
DPY19L1   3850000 perm   6471 sec   (595 perm/sec)   p_kst 3.607792e-04   p_cons 9.842626e-01   p_joint 9.935065e-04

Joint ci ratio: 6.366017e-02	ci left: 9.501018e-04	ci right 1.012827e-03	k: 3787	n:3860000
Cons ci ratio: 2.522784e-04	ci left: 9.841399e-01	ci right 9.843884e-01	k: 3799261	n:3860000
KS ci ratio: 1.050858e-01	ci left: 3.414226e-04	ci right 3.795407e-04	k: 1390	n:3860000
DPY19L1   3860000 perm   6504 sec   (593 perm/sec)   p_kst 3.601036e-04   p_cons 9.842645e-01   p_joint 9.810881e-04

Joint ci ratio: 6.358469e-02	ci left: 9.499353e-04	ci right 1.012572e-03	k: 3796	n:3870000
Cons ci ratio: 2.519136e-04	ci left: 9.841448e-01	ci right 9.843930e-01	k: 3809122	n:3870000
KS ci ratio: 1.050104e-01	ci left: 3.410436e-04	ci right 3.790904e-04	k: 1392	n:3870000
DPY19L1   3870000 perm   6536 sec   (592 perm/sec)   p_kst 3.596899e-04   p_cons 9.842693e-01   p_joint 9.808786e-04

Joint ci ratio: 6.355127e-02	ci left: 9.485016e-04	ci right 1.011010e-03	k: 3800	n:3880000
Cons ci ratio: 2.515965e-04	ci left: 9.841440e-01	ci right 9.843919e-01	k: 3818961	n:3880000
KS ci ratio: 1.048975e-01	ci left: 3.409175e-04	ci right 3.789068e-04	k: 1395	n:3880000
DPY19L1   3880000 perm   6568 sec   (591 perm/sec)   p_kst 3.595361e-04   p_cons 9.842683e-01   p_joint 9.793814e-04

Joint ci ratio: 6.495188e-02	ci left: 9.050863e-04	ci right 9.660975e-04	k: 3638	n:3890000
Cons ci ratio: 2.513056e-04	ci left: 9.841401e-01	ci right 9.843877e-01	k: 3828788	n:3890000
KS ci ratio: 1.047475e-01	ci left: 3.410424e-04	ci right 3.789880e-04	k: 1399	n:3890000
DPY19L1   3890000 perm   6600 sec   (589 perm/sec)   p_kst 3.596401e-04   p_cons 9.842643e-01   p_joint 9.352185e-04

Joint ci ratio: 6.487172e-02	ci left: 9.050358e-04	ci right 9.659655e-04	k: 3647	n:3900000
Cons ci ratio: 2.509783e-04	ci left: 9.841409e-01	ci right 9.843882e-01	k: 3838633	n:3900000
KS ci ratio: 1.046728e-01	ci left: 3.406673e-04	ci right 3.785425e-04	k: 1401	n:3900000
DPY19L1   3900000 perm   6633 sec   (588 perm/sec)   p_kst 3.592308e-04   p_cons 9.842649e-01   p_joint 9.351282e-04

Joint ci ratio: 6.212798e-02	ci left: 9.855302e-04	ci right 1.048972e-03	k: 3976	n:3910000
Cons ci ratio: 2.506440e-04	ci left: 9.841427e-01	ci right 9.843896e-01	k: 3848482	n:3910000
KS ci ratio: 1.044867e-01	ci left: 3.410414e-04	ci right 3.788866e-04	k: 1406	n:3910000
DPY19L1   3910000 perm   6665 sec   (587 perm/sec)   p_kst 3.595908e-04   p_cons 9.842665e-01   p_joint 1.016880e-03

Joint ci ratio: 6.203445e-02	ci left: 9.860298e-04	ci right 1.049405e-03	k: 3988	n:3920000
Cons ci ratio: 2.503049e-04	ci left: 9.841452e-01	ci right 9.843918e-01	k: 3858334	n:3920000
KS ci ratio: 1.043754e-01	ci left: 3.409167e-04	ci right 3.787053e-04	k: 1409	n:3920000
DPY19L1   3920000 perm   6697 sec   (585 perm/sec)   p_kst 3.594388e-04   p_cons 9.842689e-01   p_joint 1.017347e-03

Joint ci ratio: 6.220648e-02	ci left: 9.780097e-04	ci right 1.041050e-03	k: 3966	n:3930000
Cons ci ratio: 2.499609e-04	ci left: 9.841485e-01	ci right 9.843948e-01	k: 3868189	n:3930000
KS ci ratio: 1.042277e-01	ci left: 3.410405e-04	ci right 3.787860e-04	k: 1413	n:3930000
DPY19L1   3930000 perm   6728 sec   (584 perm/sec)   p_kst 3.595420e-04   p_cons 9.842720e-01   p_joint 1.009160e-03

Joint ci ratio: 6.211259e-02	ci left: 9.785258e-04	ci right 1.041501e-03	k: 3978	n:3940000
Cons ci ratio: 2.496470e-04	ci left: 9.841482e-01	ci right 9.843942e-01	k: 3878030	n:3940000
KS ci ratio: 1.040806e-01	ci left: 3.411637e-04	ci right 3.788663e-04	k: 1417	n:3940000
DPY19L1   3940000 perm   6762 sec   (583 perm/sec)   p_kst 3.596447e-04   p_cons 9.842716e-01   p_joint 1.009645e-03

Joint ci ratio: 6.201913e-02	ci left: 9.790394e-04	ci right 1.041949e-03	k: 3990	n:3950000
Cons ci ratio: 2.493567e-04	ci left: 9.841452e-01	ci right 9.843908e-01	k: 3887860	n:3950000
KS ci ratio: 1.039341e-01	ci left: 3.412863e-04	ci right 3.789461e-04	k: 1421	n:3950000
DPY19L1   3950000 perm   6795 sec   (581 perm/sec)   p_kst 3.597468e-04   p_cons 9.842684e-01   p_joint 1.010127e-03

Joint ci ratio: 6.196483e-02	ci left: 9.783073e-04	ci right 1.041113e-03	k: 3997	n:3960000
Cons ci ratio: 2.490228e-04	ci left: 9.841477e-01	ci right 9.843930e-01	k: 3897712	n:3960000
KS ci ratio: 1.037882e-01	ci left: 3.414083e-04	ci right 3.790255e-04	k: 1425	n:3960000
DPY19L1   3960000 perm   6827 sec   (580 perm/sec)   p_kst 3.598485e-04   p_cons 9.842707e-01   p_joint 1.009343e-03

Joint ci ratio: 6.189521e-02	ci left: 9.780750e-04	ci right 1.040793e-03	k: 4006	n:3970000
Cons ci ratio: 2.486375e-04	ci left: 9.841568e-01	ci right 9.844017e-01	k: 3907590	n:3970000
KS ci ratio: 1.036792e-01	ci left: 3.412844e-04	ci right 3.788461e-04	k: 1428	n:3970000
DPY19L1   3970000 perm   6860 sec   (579 perm/sec)   p_kst 3.596977e-04   p_cons 9.842796e-01   p_joint 1.009068e-03

Joint ci ratio: 6.181812e-02	ci left: 9.780912e-04	ci right 1.040729e-03	k: 4016	n:3980000
Cons ci ratio: 2.482701e-04	ci left: 9.841638e-01	ci right 9.844084e-01	k: 3917460	n:3980000
KS ci ratio: 1.035344e-01	ci left: 3.414059e-04	ci right 3.789253e-04	k: 1432	n:3980000
DPY19L1   3980000 perm   6893 sec   (577 perm/sec)   p_kst 3.597990e-04   p_cons 9.842864e-01   p_joint 1.009045e-03

Joint ci ratio: 6.180280e-02	ci left: 9.761333e-04	ci right 1.038630e-03	k: 4018	n:3990000
Cons ci ratio: 2.479866e-04	ci left: 9.841604e-01	ci right 9.844048e-01	k: 3927289	n:3990000
KS ci ratio: 1.034983e-01	ci left: 3.407944e-04	ci right 3.782327e-04	k: 1433	n:3990000
DPY19L1   3990000 perm   6925 sec   (576 perm/sec)   p_kst 3.591479e-04   p_cons 9.842830e-01   p_joint 1.007018e-03

Joint ci ratio: 6.242795e-02	ci left: 9.540033e-04	ci right 1.015723e-03	k: 3938	n:4000000
Cons ci ratio: 2.476461e-04	ci left: 9.841644e-01	ci right 9.844084e-01	k: 3937147	n:4000000
KS ci ratio: 1.034263e-01	ci left: 3.404294e-04	ci right 3.778001e-04	k: 1435	n:4000000
DPY19L1   4000000 perm   6957 sec   (575 perm/sec)   p_kst 3.587500e-04   p_cons 9.842867e-01   p_joint 9.845000e-04

Joint ci ratio: 6.231727e-02	ci left: 9.550610e-04	ci right 1.016735e-03	k: 3952	n:4010000
Cons ci ratio: 2.473309e-04	ci left: 9.841653e-01	ci right 9.844090e-01	k: 3946993	n:4010000
KS ci ratio: 1.032467e-01	ci left: 3.407952e-04	ci right 3.781370e-04	k: 1440	n:4010000
DPY19L1   4010000 perm   6990 sec   (574 perm/sec)   p_kst 3.591022e-04   p_cons 9.842875e-01   p_joint 9.855362e-04

Joint ci ratio: 6.223074e-02	ci left: 9.553790e-04	ci right 1.016985e-03	k: 3963	n:4020000
Cons ci ratio: 2.470228e-04	ci left: 9.841655e-01	ci right 9.844089e-01	k: 3956836	n:4020000
KS ci ratio: 1.031751e-01	ci left: 3.404321e-04	ci right 3.777067e-04	k: 1442	n:4020000
DPY19L1   4020000 perm   7023 sec   (572 perm/sec)   p_kst 3.587065e-04   p_cons 9.842876e-01   p_joint 9.858209e-04

Joint ci ratio: 6.219157e-02	ci left: 9.542297e-04	ci right 1.015722e-03	k: 3968	n:4030000
Cons ci ratio: 2.467080e-04	ci left: 9.841667e-01	ci right 9.844098e-01	k: 3966683	n:4030000
KS ci ratio: 1.030324e-01	ci left: 3.405543e-04	ci right 3.777876e-04	k: 1446	n:4030000
DPY19L1   4030000 perm   7056 sec   (571 perm/sec)   p_kst 3.588089e-04   p_cons 9.842886e-01   p_joint 9.846154e-04

Joint ci ratio: 6.222304e-02	ci left: 9.508930e-04	ci right 1.012202e-03	k: 3964	n:4040000
Cons ci ratio: 2.464318e-04	ci left: 9.841632e-01	ci right 9.844060e-01	k: 3976511	n:4040000
KS ci ratio: 1.028548e-01	ci left: 3.409171e-04	ci right 3.781220e-04	k: 1451	n:4040000
DPY19L1   4040000 perm   7089 sec   (570 perm/sec)   p_kst 3.591584e-04   p_cons 9.842849e-01   p_joint 9.811881e-04

Joint ci ratio: 6.214472e-02	ci left: 9.509759e-04	ci right 1.012210e-03	k: 3974	n:4050000
Cons ci ratio: 2.461389e-04	ci left: 9.841619e-01	ci right 9.844044e-01	k: 3986348	n:4050000
KS ci ratio: 1.028195e-01	ci left: 3.403159e-04	ci right 3.774416e-04	k: 1452	n:4050000
DPY19L1   4050000 perm   7122 sec   (569 perm/sec)   p_kst 3.585185e-04   p_cons 9.842835e-01   p_joint 9.812346e-04

Joint ci ratio: 6.208229e-02	ci left: 9.505734e-04	ci right 1.011718e-03	k: 3982	n:4060000
Cons ci ratio: 2.458411e-04	ci left: 9.841613e-01	ci right 9.844035e-01	k: 3996188	n:4060000
KS ci ratio: 1.027135e-01	ci left: 3.401976e-04	ci right 3.772698e-04	k: 1455	n:4060000
DPY19L1   4060000 perm   7154 sec   (567 perm/sec)   p_kst 3.583744e-04   p_cons 9.842828e-01   p_joint 9.807882e-04

Joint ci ratio: 6.199673e-02	ci left: 9.508986e-04	ci right 1.011977e-03	k: 3993	n:4070000
Cons ci ratio: 2.455210e-04	ci left: 9.841637e-01	ci right 9.844056e-01	k: 4006040	n:4070000
KS ci ratio: 1.025025e-01	ci left: 3.407981e-04	ci right 3.778549e-04	k: 1461	n:4070000
DPY19L1   4070000 perm   7187 sec   (566 perm/sec)   p_kst 3.589681e-04   p_cons 9.842850e-01   p_joint 9.810811e-04

Joint ci ratio: 6.194249e-02	ci left: 9.502571e-04	ci right 1.011239e-03	k: 4000	n:4080000
Cons ci ratio: 2.451983e-04	ci left: 9.841666e-01	ci right 9.844082e-01	k: 4015894	n:4080000
KS ci ratio: 1.025025e-01	ci left: 3.399628e-04	ci right 3.769288e-04	k: 1461	n:4080000
DPY19L1   4080000 perm   7220 sec   (565 perm/sec)   p_kst 3.580882e-04   p_cons 9.842877e-01   p_joint 9.803922e-04

Joint ci ratio: 6.190386e-02	ci left: 9.491372e-04	ci right 1.010008e-03	k: 4005	n:4090000
Cons ci ratio: 2.449058e-04	ci left: 9.841658e-01	ci right 9.844071e-01	k: 4025733	n:4090000
KS ci ratio: 1.024325e-01	ci left: 3.396081e-04	ci right 3.765087e-04	k: 1463	n:4090000
DPY19L1   4090000 perm   7252 sec   (564 perm/sec)   p_kst 3.577017e-04   p_cons 9.842868e-01   p_joint 9.792176e-04

Joint ci ratio: 6.178825e-02	ci left: 9.504243e-04	ci right 1.011260e-03	k: 4020	n:4100000
Cons ci ratio: 2.446106e-04	ci left: 9.841655e-01	ci right 9.844065e-01	k: 4035574	n:4100000
KS ci ratio: 1.023277e-01	ci left: 3.394927e-04	ci right 3.763409e-04	k: 1466	n:4100000
DPY19L1   4100000 perm   7285 sec   (563 perm/sec)   p_kst 3.575610e-04   p_cons 9.842863e-01   p_joint 9.804878e-04

Joint ci ratio: 6.173456e-02	ci left: 9.497886e-04	ci right 1.010529e-03	k: 4027	n:4110000
Cons ci ratio: 2.443068e-04	ci left: 9.841664e-01	ci right 9.844071e-01	k: 4045420	n:4110000
KS ci ratio: 1.022232e-01	ci left: 3.393780e-04	ci right 3.761738e-04	k: 1469	n:4110000
DPY19L1   4110000 perm   7319 sec   (562 perm/sec)   p_kst 3.574209e-04   p_cons 9.842871e-01   p_joint 9.798054e-04

Joint ci ratio: 6.167336e-02	ci left: 9.493951e-04	ci right 1.010048e-03	k: 4035	n:4120000
Cons ci ratio: 2.440118e-04	ci left: 9.841663e-01	ci right 9.844068e-01	k: 4055262	n:4120000
KS ci ratio: 1.022233e-01	ci left: 3.385542e-04	ci right 3.752608e-04	k: 1469	n:4120000
DPY19L1   4120000 perm   7352 sec   (560 perm/sec)   p_kst 3.565534e-04   p_cons 9.842869e-01   p_joint 9.793689e-04

Joint ci ratio: 6.179616e-02	ci left: 9.432820e-04	ci right 1.003668e-03	k: 4019	n:4130000
Cons ci ratio: 2.436854e-04	ci left: 9.841704e-01	ci right 9.844105e-01	k: 4065121	n:4130000
KS ci ratio: 1.021191e-01	ci left: 3.384423e-04	ci right 3.750971e-04	k: 1472	n:4130000
DPY19L1   4130000 perm   7386 sec   (559 perm/sec)   p_kst 3.564165e-04   p_cons 9.842908e-01   p_joint 9.731235e-04

Joint ci ratio: 6.175781e-02	ci left: 9.421926e-04	ci right 1.002470e-03	k: 4024	n:4140000
Cons ci ratio: 2.434040e-04	ci left: 9.841689e-01	ci right 9.844087e-01	k: 4074957	n:4140000
KS ci ratio: 1.020153e-01	ci left: 3.383310e-04	ci right 3.749342e-04	k: 1475	n:4140000
DPY19L1   4140000 perm   7419 sec   (558 perm/sec)   p_kst 3.562802e-04   p_cons 9.842891e-01   p_joint 9.719807e-04

Joint ci ratio: 6.178862e-02	ci left: 9.389732e-04	ci right 9.990760e-04	k: 4020	n:4150000
Cons ci ratio: 2.431540e-04	ci left: 9.841635e-01	ci right 9.844031e-01	k: 4084777	n:4150000
KS ci ratio: 1.019463e-01	ci left: 3.379853e-04	ci right 3.745249e-04	k: 1477	n:4150000
DPY19L1   4150000 perm   7453 sec   (557 perm/sec)   p_kst 3.559036e-04   p_cons 9.842836e-01   p_joint 9.686747e-04

Joint ci ratio: 6.175027e-02	ci left: 9.378994e-04	ci right 9.978949e-04	k: 4025	n:4160000
Cons ci ratio: 2.428348e-04	ci left: 9.841671e-01	ci right 9.844063e-01	k: 4094634	n:4160000
KS ci ratio: 1.018774e-01	ci left: 3.376414e-04	ci right 3.741177e-04	k: 1479	n:4160000
DPY19L1   4160000 perm   7488 sec   (556 perm/sec)   p_kst 3.555288e-04   p_cons 9.842870e-01   p_joint 9.675481e-04

Joint ci ratio: 6.165079e-02	ci left: 9.387197e-04	ci right 9.986674e-04	k: 4038	n:4170000
Cons ci ratio: 2.425075e-04	ci left: 9.841718e-01	ci right 9.844107e-01	k: 4104496	n:4170000
KS ci ratio: 1.015690e-01	ci left: 3.389351e-04	ci right 3.754337e-04	k: 1488	n:4170000
DPY19L1   4170000 perm   7522 sec   (554 perm/sec)   p_kst 3.568345e-04   p_cons 9.842916e-01   p_joint 9.683453e-04

Joint ci ratio: 6.155179e-02	ci left: 9.395361e-04	ci right 9.994362e-04	k: 4051	n:4180000
Cons ci ratio: 2.422021e-04	ci left: 9.841739e-01	ci right 9.844125e-01	k: 4114347	n:4180000
KS ci ratio: 1.014328e-01	ci left: 3.390569e-04	ci right 3.755167e-04	k: 1492	n:4180000
DPY19L1   4180000 perm   7556 sec   (553 perm/sec)   p_kst 3.569378e-04   p_cons 9.842935e-01   p_joint 9.691388e-04

Joint ci ratio: 6.147598e-02	ci left: 9.396437e-04	ci right 9.994742e-04	k: 4061	n:4190000
Cons ci ratio: 2.418978e-04	ci left: 9.841760e-01	ci right 9.844143e-01	k: 4124198	n:4190000
KS ci ratio: 1.013650e-01	ci left: 3.387129e-04	ci right 3.751099e-04	k: 1494	n:4190000
DPY19L1   4190000 perm   7590 sec   (552 perm/sec)   p_kst 3.565632e-04   p_cons 9.842955e-01   p_joint 9.692124e-04

Joint ci ratio: 6.138535e-02	ci left: 9.402197e-04	ci right 9.999955e-04	k: 4073	n:4200000
Cons ci ratio: 2.415835e-04	ci left: 9.841795e-01	ci right 9.844175e-01	k: 4134055	n:4200000
KS ci ratio: 1.012973e-01	ci left: 3.383705e-04	ci right 3.747051e-04	k: 1496	n:4200000
DPY19L1   4200000 perm   7625 sec   (551 perm/sec)   p_kst 3.561905e-04   p_cons 9.842988e-01   p_joint 9.697619e-04

Joint ci ratio: 6.131767e-02	ci left: 9.400914e-04	ci right 9.997908e-04	k: 4082	n:4210000
Cons ci ratio: 2.413075e-04	ci left: 9.841782e-01	ci right 9.844159e-01	k: 4143892	n:4210000
KS ci ratio: 1.011622e-01	ci left: 3.384929e-04	ci right 3.747892e-04	k: 1500	n:4210000
DPY19L1   4210000 perm   7661 sec   (550 perm/sec)   p_kst 3.562945e-04   p_cons 9.842974e-01   p_joint 9.695962e-04

Joint ci ratio: 6.122026e-02	ci left: 9.408970e-04	ci right 1.000549e-03	k: 4095	n:4220000
Cons ci ratio: 2.410306e-04	ci left: 9.841771e-01	ci right 9.844146e-01	k: 4153730	n:4220000
KS ci ratio: 1.011622e-01	ci left: 3.376907e-04	ci right 3.739011e-04	k: 1500	n:4220000
DPY19L1   4220000 perm   7696 sec   (548 perm/sec)   p_kst 3.554502e-04   p_cons 9.842962e-01   p_joint 9.703791e-04

Joint ci ratio: 6.119043e-02	ci left: 9.396038e-04	ci right 9.991441e-04	k: 4099	n:4230000
Cons ci ratio: 2.407565e-04	ci left: 9.841759e-01	ci right 9.844131e-01	k: 4163567	n:4230000
KS ci ratio: 1.011286e-01	ci left: 3.371228e-04	ci right 3.732595e-04	k: 1501	n:4230000
DPY19L1   4230000 perm   7730 sec   (547 perm/sec)   p_kst 3.548463e-04   p_cons 9.842948e-01   p_joint 9.690307e-04

Joint ci ratio: 6.114573e-02	ci left: 9.387812e-04	ci right 9.982244e-04	k: 4105	n:4240000
Cons ci ratio: 2.404870e-04	ci left: 9.841741e-01	ci right 9.844111e-01	k: 4173402	n:4240000
KS ci ratio: 1.010277e-01	ci left: 3.370174e-04	ci right 3.731046e-04	k: 1504	n:4240000
DPY19L1   4240000 perm   7775 sec   (545 perm/sec)   p_kst 3.547170e-04   p_cons 9.842929e-01   p_joint 9.681604e-04

Joint ci ratio: 6.105656e-02	ci left: 9.393527e-04	ci right 9.987423e-04	k: 4117	n:4250000
Cons ci ratio: 2.402111e-04	ci left: 9.841733e-01	ci right 9.844100e-01	k: 4183241	n:4250000
KS ci ratio: 1.008269e-01	ci left: 3.376006e-04	ci right 3.736741e-04	k: 1510	n:4250000
DPY19L1   4250000 perm   7815 sec   (544 perm/sec)   p_kst 3.552941e-04   p_cons 9.842920e-01   p_joint 9.687059e-04

Joint ci ratio: 6.096778e-02	ci left: 9.399216e-04	ci right 9.992577e-04	k: 4129	n:4260000
Cons ci ratio: 2.399489e-04	ci left: 9.841709e-01	ci right 9.844073e-01	k: 4193073	n:4260000
KS ci ratio: 1.006937e-01	ci left: 3.377234e-04	ci right 3.737596e-04	k: 1514	n:4260000
DPY19L1   4260000 perm   7859 sec   (542 perm/sec)   p_kst 3.553991e-04   p_cons 9.842894e-01   p_joint 9.692488e-04

Joint ci ratio: 6.088674e-02	ci left: 9.402573e-04	ci right 9.995329e-04	k: 4140	n:4270000
Cons ci ratio: 2.396621e-04	ci left: 9.841718e-01	ci right 9.844079e-01	k: 4202919	n:4270000
KS ci ratio: 1.004949e-01	ci left: 3.383023e-04	ci right 3.743247e-04	k: 1520	n:4270000
DPY19L1   4270000 perm   7903 sec   (540 perm/sec)   p_kst 3.559719e-04   p_cons 9.842902e-01   p_joint 9.695550e-04

Joint ci ratio: 6.085739e-02	ci left: 9.389807e-04	ci right 9.981463e-04	k: 4144	n:4280000
Cons ci ratio: 2.393945e-04	ci left: 9.841703e-01	ci right 9.844062e-01	k: 4212755	n:4280000
KS ci ratio: 1.004619e-01	ci left: 3.377396e-04	ci right 3.736897e-04	k: 1521	n:4280000
DPY19L1   4280000 perm   7943 sec   (539 perm/sec)   p_kst 3.553738e-04   p_cons 9.842886e-01   p_joint 9.682243e-04

Joint ci ratio: 6.217775e-02	ci left: 8.968557e-04	ci right 9.546371e-04	k: 3970	n:4290000
Cons ci ratio: 2.391115e-04	ci left: 9.841709e-01	ci right 9.844065e-01	k: 4222600	n:4290000
KS ci ratio: 1.002973e-01	ci left: 3.380886e-04	ci right 3.740133e-04	k: 1526	n:4290000
DPY19L1   4290000 perm   7990 sec   (537 perm/sec)   p_kst 3.557110e-04   p_cons 9.842890e-01   p_joint 9.254079e-04

Joint ci ratio: 6.212303e-02	ci left: 8.963726e-04	ci right 9.540703e-04	k: 3977	n:4300000
Cons ci ratio: 2.388115e-04	ci left: 9.841739e-01	ci right 9.844092e-01	k: 4232455	n:4300000
KS ci ratio: 1.001662e-01	ci left: 3.382092e-04	ci right 3.740971e-04	k: 1530	n:4300000
DPY19L1   4300000 perm   8029 sec   (536 perm/sec)   p_kst 3.558140e-04   p_cons 9.842919e-01   p_joint 9.248837e-04

Joint ci ratio: 6.203731e-02	ci left: 8.968055e-04	ci right 9.544485e-04	k: 3988	n:4310000
Cons ci ratio: 2.385199e-04	ci left: 9.841759e-01	ci right 9.844109e-01	k: 4242306	n:4310000
KS ci ratio: 1.001335e-01	ci left: 3.376507e-04	ci right 3.734669e-04	k: 1531	n:4310000
DPY19L1   4310000 perm   8065 sec   (534 perm/sec)   p_kst 3.552204e-04   p_cons 9.842937e-01   p_joint 9.252900e-04

Joint ci ratio: 6.195193e-02	ci left: 8.972364e-04	ci right 9.548248e-04	k: 3999	n:4320000
Cons ci ratio: 2.382203e-04	ci left: 9.841791e-01	ci right 9.844138e-01	k: 4252162	n:4320000
KS ci ratio: 9.997049e-02	ci left: 3.379976e-04	ci right 3.737888e-04	k: 1536	n:4320000
DPY19L1   4320000 perm   8103 sec   (533 perm/sec)   p_kst 3.555556e-04   p_cons 9.842968e-01   p_joint 9.256944e-04

Outputting figure to mutsig2_images.part000000000052/DPY19L1.7_2116_4320000_0.00035556_0.9843_0.00092569.png
                gene_name: DPY19L1
               theta_stop: 0.100 
                    nperm: 4320000 
                     p_ks: 0.00036 
        ci_ks_bounds_left: 0.00034 
       ci_ks_bounds_right: 0.00037 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.00093 
     ci_joint_bounds_left: 0.00090 
    ci_joint_bounds_right: 0.00095 

Current progress: 50 percent done.
DPYS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.816980e-02	ci left: 3.031235e-01	ci right 3.213860e-01	k: 3122	n:10000
Cons ci ratio: 1.076856e-01	ci left: 1.106648e-01	ci right 1.233592e-01	k: 1169	n:10000
KS ci ratio: 4.127109e-02	ci left: 4.643719e-01	ci right 4.840431e-01	k: 4742	n:10000
DPYS   10000 perm   2 sec   (5676 perm/sec)   p_kst 4.742000e-01   p_cons 1.169000e-01   p_joint 3.122000e-01

Joint ci ratio: 4.953562e-02	ci left: 2.325080e-01	ci right 2.443682e-01	k: 4768	n:20000
Cons ci ratio: 7.559884e-02	ci left: 1.140023e-01	ci right 1.230090e-01	k: 2369	n:20000
KS ci ratio: 2.927334e-02	ci left: 4.657602e-01	ci right 4.796477e-01	k: 9454	n:20000
DPYS   20000 perm   4 sec   (5244 perm/sec)   p_kst 4.727000e-01   p_cons 1.184500e-01   p_joint 2.384000e-01

Outputting figure to mutsig2_images.part000000000052/DPYS.7_1596_20000_0.4727_0.11845_0.2384.png
                gene_name: DPYS
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 52 percent done.
DNM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.502554e-02	ci left: 5.461967e-01	ci right 5.657707e-01	k: 5560	n:10000
Cons ci ratio: 2.454149e-02	ci left: 7.094718e-01	ci right 7.272009e-01	k: 7184	n:10000
KS ci ratio: 5.054278e-02	ci left: 3.659962e-01	ci right 3.850763e-01	k: 3755	n:10000
DNM2   10000 perm   2 sec   (5581 perm/sec)   p_kst 3.755000e-01   p_cons 7.184000e-01   p_joint 5.560000e-01

Outputting figure to mutsig2_images.part000000000052/DNM2.6_2840_10000_0.3755_0.7184_0.556.png
                gene_name: DNM2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 54 percent done.
DOCK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.301242e-02	ci left: 3.440247e-01	ci right 3.628608e-01	k: 3534	n:10000
Cons ci ratio: 2.885738e-02	ci left: 6.390502e-01	ci right 6.578633e-01	k: 6485	n:10000
KS ci ratio: 9.541650e-02	ci left: 1.374671e-01	ci right 1.513407e-01	k: 1443	n:10000
DOCK6   10000 perm   2 sec   (4445 perm/sec)   p_kst 1.443000e-01   p_cons 6.485000e-01   p_joint 3.534000e-01

Outputting figure to mutsig2_images.part000000000052/DOCK6.6_6336_10000_0.1443_0.6485_0.3534.png
                gene_name: DOCK6
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 56 percent done.
DOK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.055019e-01	ci left: 1.148645e-01	ci right 1.277571e-01	k: 1212	n:10000
Cons ci ratio: 1.494741e-02	ci left: 8.664173e-01	ci right 8.795646e-01	k: 8731	n:10000
KS ci ratio: 1.890957e-01	ci left: 3.729324e-02	ci right 4.517686e-02	k: 411	n:10000
DOK5   10000 perm   2 sec   (6429 perm/sec)   p_kst 4.110000e-02   p_cons 8.731000e-01   p_joint 1.212000e-01

Joint ci ratio: 8.118383e-02	ci left: 1.001458e-01	ci right 1.086696e-01	k: 2087	n:20000
Cons ci ratio: 1.085735e-02	ci left: 8.622155e-01	ci right 8.716776e-01	k: 17340	n:20000
KS ci ratio: 1.342244e-01	ci left: 3.814864e-02	ci right 4.368584e-02	k: 817	n:20000
DOK5   20000 perm   4 sec   (5500 perm/sec)   p_kst 4.085000e-02   p_cons 8.670000e-01   p_joint 1.043500e-01

Joint ci ratio: 7.655769e-02	ci left: 7.728166e-02	ci right 8.346656e-02	k: 2410	n:30000
Cons ci ratio: 8.880107e-03	ci left: 8.627004e-01	ci right 8.704285e-01	k: 25998	n:30000
KS ci ratio: 1.090858e-01	ci left: 3.901127e-02	ci right 4.354478e-02	k: 1237	n:30000
DOK5   30000 perm   6 sec   (5276 perm/sec)   p_kst 4.123333e-02   p_cons 8.666000e-01   p_joint 8.033333e-02

Joint ci ratio: 5.527897e-02	ci left: 1.085795e-01	ci right 1.147770e-01	k: 4466	n:40000
Cons ci ratio: 7.681975e-03	ci left: 8.634815e-01	ci right 8.701651e-01	k: 34674	n:40000
KS ci ratio: 9.561499e-02	ci left: 3.839368e-02	ci right 4.227341e-02	k: 1612	n:40000
DOK5   40000 perm   8 sec   (5127 perm/sec)   p_kst 4.030000e-02   p_cons 8.668500e-01   p_joint 1.116500e-01

Outputting figure to mutsig2_images.part000000000052/DOK5.6_953_40000_0.0403_0.86685_0.11165.png
                gene_name: DOK5
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 58 percent done.
DPY19L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.526458e-02	ci left: 6.974658e-01	ci right 7.154138e-01	k: 7065	n:10000
Cons ci ratio: 4.375241e-02	ci left: 4.354264e-01	ci right 4.550056e-01	k: 4452	n:10000
KS ci ratio: 3.047144e-02	ci left: 6.137180e-01	ci right 6.328101e-01	k: 6233	n:10000
DPY19L2   10000 perm   2 sec   (5142 perm/sec)   p_kst 6.233000e-01   p_cons 4.452000e-01   p_joint 7.065000e-01

Outputting figure to mutsig2_images.part000000000052/DPY19L2.6_2365_10000_0.6233_0.4452_0.7065.png
                gene_name: DPY19L2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 60 percent done.
DOPEY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.039597e-02	ci left: 4.750602e-01	ci right 4.947485e-01	k: 4849	n:10000
Cons ci ratio: 7.999633e-03	ci left: 9.560775e-01	ci right 9.638516e-01	k: 9601	n:10000
KS ci ratio: 6.304674e-02	ci left: 2.699278e-01	ci right 2.876013e-01	k: 2787	n:10000
DOPEY2   10000 perm   3 sec   (3905 perm/sec)   p_kst 2.787000e-01   p_cons 9.601000e-01   p_joint 4.849000e-01

Outputting figure to mutsig2_images.part000000000052/DOPEY2.5_7041_10000_0.2787_0.9601_0.4849.png
                gene_name: DOPEY2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 62 percent done.
DPF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.319759e-01	ci left: 3.972510e-03	ci right 6.926868e-03	k: 53	n:10000
Cons ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
KS ci ratio: 6.918207e-01	ci left: 2.107242e-03	ci right 4.397341e-03	k: 31	n:10000
DPF2   10000 perm   2 sec   (5903 perm/sec)   p_kst 3.100000e-03   p_cons 4.130000e-02   p_joint 5.300000e-03

Joint ci ratio: 4.267974e-01	ci left: 3.306767e-03	ci right 5.141989e-03	k: 83	n:20000
Cons ci ratio: 1.359668e-01	ci left: 3.718116e-02	ci right 4.265364e-02	k: 797	n:20000
KS ci ratio: 4.487885e-01	ci left: 2.950721e-03	ci right 4.698422e-03	k: 75	n:20000
DPF2   20000 perm   4 sec   (5026 perm/sec)   p_kst 3.750000e-03   p_cons 3.985000e-02   p_joint 4.150000e-03

Joint ci ratio: 4.748229e-01	ci left: 1.731209e-03	ci right 2.835399e-03	k: 67	n:30000
Cons ci ratio: 1.118471e-01	ci left: 3.712929e-02	ci right 4.156049e-02	k: 1179	n:30000
KS ci ratio: 3.571231e-01	ci left: 3.287119e-03	ci right 4.744855e-03	k: 119	n:30000
DPF2   30000 perm   6 sec   (4872 perm/sec)   p_kst 3.966667e-03   p_cons 3.930000e-02   p_joint 2.233333e-03

Joint ci ratio: 2.883172e-01	ci left: 3.937349e-03	ci right 5.286122e-03	k: 183	n:40000
Cons ci ratio: 9.636447e-02	ci left: 3.780753e-02	ci right 4.165966e-02	k: 1588	n:40000
KS ci ratio: 3.163026e-01	ci left: 3.220809e-03	ci right 4.452947e-03	k: 152	n:40000
DPF2   40000 perm   8 sec   (4768 perm/sec)   p_kst 3.800000e-03   p_cons 3.970000e-02   p_joint 4.575000e-03

Joint ci ratio: 2.147462e-01	ci left: 5.909029e-03	ci right 7.349151e-03	k: 330	n:50000
Cons ci ratio: 8.606156e-02	ci left: 3.812284e-02	ci right 4.157084e-02	k: 1991	n:50000
KS ci ratio: 2.941203e-01	ci left: 3.019884e-03	ci right 4.079046e-03	k: 176	n:50000
DPF2   50000 perm   11 sec   (4614 perm/sec)   p_kst 3.520000e-03   p_cons 3.982000e-02   p_joint 6.600000e-03

Joint ci ratio: 1.883590e-01	ci left: 6.491426e-03	ci right 7.856896e-03	k: 429	n:60000
Cons ci ratio: 6.872564e-02	ci left: 4.966296e-02	ci right 5.321392e-02	k: 3085	n:60000
KS ci ratio: 2.650110e-01	ci left: 3.152148e-03	ci right 4.130165e-03	k: 217	n:60000
DPF2   60000 perm   13 sec   (4529 perm/sec)   p_kst 3.616667e-03   p_cons 5.141667e-02   p_joint 7.150000e-03

Joint ci ratio: 1.909292e-01	ci left: 5.414102e-03	ci right 6.570281e-03	k: 418	n:70000
Cons ci ratio: 6.384605e-02	ci left: 4.946617e-02	ci right 5.274259e-02	k: 3576	n:70000
KS ci ratio: 2.460008e-01	ci left: 3.169864e-03	ci right 4.072053e-03	k: 252	n:70000
DPF2   70000 perm   16 sec   (4420 perm/sec)   p_kst 3.600000e-03   p_cons 5.108571e-02   p_joint 5.971429e-03

Joint ci ratio: 1.853071e-01	ci left: 5.046945e-03	ci right 6.089404e-03	k: 444	n:80000
Cons ci ratio: 5.972256e-02	ci left: 4.957184e-02	ci right 5.263582e-02	k: 4087	n:80000
KS ci ratio: 2.266548e-01	ci left: 3.302901e-03	ci right 4.158709e-03	k: 297	n:80000
DPF2   80000 perm   18 sec   (4352 perm/sec)   p_kst 3.712500e-03   p_cons 5.108750e-02   p_joint 5.550000e-03

Joint ci ratio: 2.695459e-01	ci left: 2.028699e-03	ci right 2.670717e-03	k: 210	n:90000
Cons ci ratio: 5.626833e-02	ci left: 4.972512e-02	ci right 5.261501e-02	k: 4604	n:90000
KS ci ratio: 2.197798e-01	ci left: 3.135190e-03	ci right 3.919569e-03	k: 316	n:90000
DPF2   90000 perm   21 sec   (4219 perm/sec)   p_kst 3.511111e-03   p_cons 5.115556e-02   p_joint 2.333333e-03

Joint ci ratio: 2.610379e-01	ci left: 1.956511e-03	ci right 2.552948e-03	k: 224	n:100000
Cons ci ratio: 5.334058e-02	ci left: 4.987159e-02	ci right 5.261451e-02	k: 5123	n:100000
KS ci ratio: 2.103746e-01	ci left: 3.096049e-03	ci right 3.833215e-03	k: 345	n:100000
DPF2   100000 perm   24 sec   (4165 perm/sec)   p_kst 3.450000e-03   p_cons 5.123000e-02   p_joint 2.240000e-03

Joint ci ratio: 2.622352e-01	ci left: 1.761633e-03	ci right 2.301527e-03	k: 222	n:110000
Cons ci ratio: 5.090302e-02	ci left: 4.985092e-02	ci right 5.246371e-02	k: 5626	n:110000
KS ci ratio: 1.981438e-01	ci left: 3.194162e-03	ci right 3.905137e-03	k: 389	n:110000
DPF2   110000 perm   27 sec   (4083 perm/sec)   p_kst 3.536364e-03   p_cons 5.114545e-02   p_joint 2.018182e-03

Joint ci ratio: 2.104356e-01	ci left: 2.579966e-03	ci right 3.194448e-03	k: 345	n:120000
Cons ci ratio: 4.874242e-02	ci left: 4.989376e-02	ci right 5.239466e-02	k: 6136	n:120000
KS ci ratio: 1.900346e-01	ci left: 3.197552e-03	ci right 3.876789e-03	k: 423	n:120000
DPF2   120000 perm   30 sec   (4032 perm/sec)   p_kst 3.525000e-03   p_cons 5.113333e-02   p_joint 2.875000e-03

Joint ci ratio: 2.029508e-01	ci left: 2.571157e-03	ci right 3.159059e-03	k: 371	n:130000
Cons ci ratio: 4.677617e-02	ci left: 5.005370e-02	ci right 5.245867e-02	k: 6662	n:130000
KS ci ratio: 1.801041e-01	ci left: 3.303737e-03	ci right 3.964862e-03	k: 471	n:130000
DPF2   130000 perm   33 sec   (3970 perm/sec)   p_kst 3.623077e-03   p_cons 5.124615e-02   p_joint 2.853846e-03

Joint ci ratio: 2.000278e-01	ci left: 2.462096e-03	ci right 3.015962e-03	k: 382	n:140000
Cons ci ratio: 4.510958e-02	ci left: 5.002293e-02	ci right 5.233856e-02	k: 7164	n:140000
KS ci ratio: 1.732635e-01	ci left: 3.327187e-03	ci right 3.965071e-03	k: 509	n:140000
DPF2   140000 perm   36 sec   (3914 perm/sec)   p_kst 3.635714e-03   p_cons 5.117143e-02   p_joint 2.728571e-03

Joint ci ratio: 1.952490e-01	ci left: 2.418350e-03	ci right 2.947832e-03	k: 401	n:150000
Cons ci ratio: 4.367840e-02	ci left: 4.984585e-02	ci right 5.207822e-02	k: 7643	n:150000
KS ci ratio: 1.665384e-01	ci left: 3.373478e-03	ci right 3.992617e-03	k: 551	n:150000
DPF2   150000 perm   39 sec   (3824 perm/sec)   p_kst 3.673333e-03   p_cons 5.095333e-02   p_joint 2.673333e-03

Joint ci ratio: 1.887844e-01	ci left: 2.433793e-03	ci right 2.946991e-03	k: 429	n:160000
Cons ci ratio: 4.227942e-02	ci left: 4.990849e-02	ci right 5.207032e-02	k: 8157	n:160000
KS ci ratio: 1.616364e-01	ci left: 3.366409e-03	ci right 3.964298e-03	k: 585	n:160000
DPF2   160000 perm   42 sec   (3774 perm/sec)   p_kst 3.656250e-03   p_cons 5.098125e-02   p_joint 2.681250e-03

Joint ci ratio: 1.933608e-01	ci left: 2.178581e-03	ci right 2.650409e-03	k: 409	n:170000
Cons ci ratio: 4.096698e-02	ci left: 5.005797e-02	ci right 5.215737e-02	k: 8687	n:170000
KS ci ratio: 1.562603e-01	ci left: 3.399975e-03	ci right 3.981858e-03	k: 626	n:170000
DPF2   170000 perm   46 sec   (3720 perm/sec)   p_kst 3.682353e-03   p_cons 5.110000e-02   p_joint 2.405882e-03

Joint ci ratio: 1.881559e-01	ci left: 2.179225e-03	ci right 2.637037e-03	k: 432	n:180000
Cons ci ratio: 3.964963e-02	ci left: 5.048343e-02	ci right 5.253104e-02	k: 9270	n:180000
KS ci ratio: 1.526540e-01	ci left: 3.371309e-03	ci right 3.933752e-03	k: 656	n:180000
DPF2   180000 perm   49 sec   (3663 perm/sec)   p_kst 3.644444e-03   p_cons 5.150000e-02   p_joint 2.400000e-03

Joint ci ratio: 1.827483e-01	ci left: 2.195020e-03	ci right 2.641430e-03	k: 458	n:190000
Cons ci ratio: 3.853622e-02	ci left: 5.065124e-02	ci right 5.264668e-02	k: 9812	n:190000
KS ci ratio: 1.487440e-01	ci left: 3.371136e-03	ci right 3.917864e-03	k: 691	n:190000
DPF2   190000 perm   53 sec   (3616 perm/sec)   p_kst 3.636842e-03   p_cons 5.164211e-02   p_joint 2.410526e-03

Joint ci ratio: 1.781502e-01	ci left: 2.199850e-03	ci right 2.634772e-03	k: 482	n:200000
Cons ci ratio: 3.751161e-02	ci left: 5.080298e-02	ci right 5.275004e-02	k: 10354	n:200000
KS ci ratio: 1.448203e-01	ci left: 3.385604e-03	ci right 3.918942e-03	k: 729	n:200000
DPF2   200000 perm   56 sec   (3575 perm/sec)   p_kst 3.645000e-03   p_cons 5.177000e-02   p_joint 2.410000e-03

Joint ci ratio: 1.738826e-01	ci left: 2.204347e-03	ci right 2.628622e-03	k: 506	n:210000
Cons ci ratio: 3.663380e-02	ci left: 5.075680e-02	ci right 5.265560e-02	k: 10857	n:210000
KS ci ratio: 1.402779e-01	ci left: 3.444812e-03	ci right 3.969034e-03	k: 777	n:210000
DPF2   210000 perm   60 sec   (3523 perm/sec)   p_kst 3.700000e-03   p_cons 5.170000e-02   p_joint 2.409524e-03

Joint ci ratio: 1.747580e-01	ci left: 2.082402e-03	ci right 2.485436e-03	k: 501	n:220000
Cons ci ratio: 3.577835e-02	ci left: 5.081445e-02	ci right 5.267011e-02	k: 11382	n:220000
KS ci ratio: 1.370567e-01	ci left: 3.450578e-03	ci right 3.962635e-03	k: 814	n:220000
DPF2   220000 perm   63 sec   (3479 perm/sec)   p_kst 3.700000e-03   p_cons 5.173636e-02   p_joint 2.277273e-03

Joint ci ratio: 1.713786e-01	ci left: 2.075052e-03	ci right 2.468094e-03	k: 521	n:230000
Cons ci ratio: 3.498790e-02	ci left: 5.084601e-02	ci right 5.266096e-02	k: 11902	n:230000
KS ci ratio: 1.352480e-01	ci left: 3.392940e-03	ci right 3.889263e-03	k: 836	n:230000
DPF2   230000 perm   67 sec   (3440 perm/sec)   p_kst 3.634783e-03   p_cons 5.174783e-02   p_joint 2.265217e-03

Joint ci ratio: 1.704080e-01	ci left: 2.012517e-03	ci right 2.391333e-03	k: 527	n:240000
Cons ci ratio: 3.420265e-02	ci left: 5.100346e-02	ci right 5.278238e-02	k: 12453	n:240000
KS ci ratio: 1.322781e-01	ci left: 3.404604e-03	ci right 3.890838e-03	k: 874	n:240000
DPF2   240000 perm   71 sec   (3381 perm/sec)   p_kst 3.641667e-03   p_cons 5.188750e-02   p_joint 2.195833e-03

Joint ci ratio: 1.663599e-01	ci left: 2.031635e-03	ci right 2.404056e-03	k: 553	n:250000
Cons ci ratio: 3.353469e-02	ci left: 5.095429e-02	ci right 5.269611e-02	k: 12955	n:250000
KS ci ratio: 1.290707e-01	ci left: 3.438670e-03	ci right 3.916950e-03	k: 918	n:250000
DPF2   250000 perm   75 sec   (3341 perm/sec)   p_kst 3.672000e-03   p_cons 5.182000e-02   p_joint 2.212000e-03

Joint ci ratio: 1.800774e-01	ci left: 1.655412e-03	ci right 1.986620e-03	k: 472	n:260000
Cons ci ratio: 3.286192e-02	ci left: 5.103516e-02	ci right 5.274408e-02	k: 13490	n:260000
KS ci ratio: 1.263495e-01	ci left: 3.455347e-03	ci right 3.925054e-03	k: 958	n:260000
DPF2   260000 perm   79 sec   (3289 perm/sec)   p_kst 3.684615e-03   p_cons 5.188462e-02   p_joint 1.815385e-03

Joint ci ratio: 1.915846e-01	ci left: 1.399846e-03	ci right 1.699905e-03	k: 417	n:270000
Cons ci ratio: 3.224992e-02	ci left: 5.104419e-02	ci right 5.272100e-02	k: 14007	n:270000
KS ci ratio: 1.231149e-01	ci left: 3.510373e-03	ci right 3.974454e-03	k: 1009	n:270000
DPF2   270000 perm   83 sec   (3244 perm/sec)   p_kst 3.737037e-03   p_cons 5.187778e-02   p_joint 1.544444e-03

Joint ci ratio: 1.501422e-01	ci left: 2.246203e-03	ci right 2.614217e-03	k: 679	n:280000
Cons ci ratio: 3.162841e-02	ci left: 5.118401e-02	ci right 5.283242e-02	k: 14561	n:280000
KS ci ratio: 1.207466e-01	ci left: 3.523504e-03	ci right 3.979720e-03	k: 1049	n:280000
DPF2   280000 perm   88 sec   (3199 perm/sec)   p_kst 3.746429e-03   p_cons 5.200357e-02   p_joint 2.425000e-03

Joint ci ratio: 1.475609e-01	ci left: 2.248424e-03	ci right 2.609910e-03	k: 703	n:290000
Cons ci ratio: 3.108600e-02	ci left: 5.117414e-02	ci right 5.279345e-02	k: 15074	n:290000
KS ci ratio: 1.190593e-01	ci left: 3.502347e-03	ci right 3.949040e-03	k: 1079	n:290000
DPF2   290000 perm   92 sec   (3160 perm/sec)   p_kst 3.720690e-03   p_cons 5.197931e-02   p_joint 2.424138e-03

Joint ci ratio: 1.334789e-01	ci left: 2.675277e-03	ci right 3.061092e-03	k: 859	n:300000
Cons ci ratio: 3.057471e-02	ci left: 5.115191e-02	ci right 5.274343e-02	k: 15583	n:300000
KS ci ratio: 1.168087e-01	ci left: 3.521474e-03	ci right 3.961531e-03	k: 1121	n:300000
DPF2   300000 perm   96 sec   (3124 perm/sec)   p_kst 3.736667e-03   p_cons 5.194333e-02   p_joint 2.863333e-03

Joint ci ratio: 1.317303e-01	ci left: 2.660709e-03	ci right 3.039002e-03	k: 882	n:310000
Cons ci ratio: 3.007602e-02	ci left: 5.116975e-02	ci right 5.273541e-02	k: 16104	n:310000
KS ci ratio: 1.151288e-01	ci left: 3.511241e-03	ci right 3.943280e-03	k: 1154	n:310000
DPF2   310000 perm   100 sec   (3090 perm/sec)   p_kst 3.722581e-03   p_cons 5.194839e-02   p_joint 2.845161e-03

Joint ci ratio: 1.331035e-01	ci left: 2.523163e-03	ci right 2.885936e-03	k: 864	n:320000
Cons ci ratio: 2.961035e-02	ci left: 5.115565e-02	ci right 5.269623e-02	k: 16615	n:320000
KS ci ratio: 1.132802e-01	ci left: 3.516873e-03	ci right 3.942192e-03	k: 1192	n:320000
DPF2   320000 perm   105 sec   (3051 perm/sec)   p_kst 3.725000e-03   p_cons 5.192187e-02   p_joint 2.700000e-03

Joint ci ratio: 1.315924e-01	ci left: 2.505302e-03	ci right 2.861097e-03	k: 884	n:330000
Cons ci ratio: 2.914234e-02	ci left: 5.122082e-02	ci right 5.273857e-02	k: 17152	n:330000
KS ci ratio: 1.117003e-01	ci left: 3.510432e-03	ci right 3.928661e-03	k: 1226	n:330000
DPF2   330000 perm   109 sec   (3014 perm/sec)   p_kst 3.715152e-03   p_cons 5.197576e-02   p_joint 2.678788e-03

Joint ci ratio: 1.297011e-01	ci left: 2.505588e-03	ci right 2.855915e-03	k: 910	n:340000
Cons ci ratio: 2.872154e-02	ci left: 5.119470e-02	ci right 5.268942e-02	k: 17659	n:340000
KS ci ratio: 1.100970e-01	ci left: 3.510129e-03	ci right 3.921930e-03	k: 1262	n:340000
DPF2   340000 perm   114 sec   (2983 perm/sec)   p_kst 3.711765e-03   p_cons 5.193824e-02   p_joint 2.676471e-03

Joint ci ratio: 1.310838e-01	ci left: 2.381474e-03	ci right 2.718275e-03	k: 891	n:350000
Cons ci ratio: 2.830286e-02	ci left: 5.122415e-02	ci right 5.269757e-02	k: 18185	n:350000
KS ci ratio: 1.086029e-01	ci left: 3.507104e-03	ci right 3.912610e-03	k: 1297	n:350000
DPF2   350000 perm   119 sec   (2949 perm/sec)   p_kst 3.705714e-03   p_cons 5.195714e-02   p_joint 2.545714e-03

Joint ci ratio: 1.290029e-01	ci left: 2.393258e-03	ci right 2.725941e-03	k: 920	n:360000
Cons ci ratio: 2.789803e-02	ci left: 5.126591e-02	ci right 5.271909e-02	k: 18716	n:360000
KS ci ratio: 1.070471e-01	ci left: 3.512394e-03	ci right 3.912327e-03	k: 1335	n:360000
DPF2   360000 perm   123 sec   (2915 perm/sec)   p_kst 3.708333e-03   p_cons 5.198889e-02   p_joint 2.555556e-03

Joint ci ratio: 1.358303e-01	ci left: 2.093362e-03	ci right 2.401003e-03	k: 830	n:370000
Cons ci ratio: 2.752744e-02	ci left: 5.124379e-02	ci right 5.267675e-02	k: 19224	n:370000
KS ci ratio: 1.052875e-01	ci left: 3.535859e-03	ci right 3.931436e-03	k: 1380	n:370000
DPF2   370000 perm   129 sec   (2876 perm/sec)   p_kst 3.729730e-03   p_cons 5.195676e-02   p_joint 2.243243e-03

Joint ci ratio: 1.137931e-01	ci left: 2.935958e-03	ci right 3.292738e-03	k: 1182	n:380000
Cons ci ratio: 2.714948e-02	ci left: 5.130140e-02	ci right 5.271597e-02	k: 19762	n:380000
KS ci ratio: 1.043117e-01	ci left: 3.509435e-03	ci right 3.898194e-03	k: 1406	n:380000
DPF2   380000 perm   134 sec   (2844 perm/sec)   p_kst 3.700000e-03   p_cons 5.200526e-02   p_joint 3.110526e-03

Joint ci ratio: 1.127040e-01	ci left: 2.917980e-03	ci right 3.268955e-03	k: 1205	n:390000
Cons ci ratio: 2.681036e-02	ci left: 5.126956e-02	ci right 5.266531e-02	k: 20266	n:390000
KS ci ratio: 1.024692e-01	ci left: 3.546841e-03	ci right 3.932385e-03	k: 1457	n:390000
DPF2   390000 perm   139 sec   (2814 perm/sec)   p_kst 3.735897e-03   p_cons 5.196410e-02   p_joint 3.089744e-03

Joint ci ratio: 1.116911e-01	ci left: 2.898485e-03	ci right 3.243776e-03	k: 1227	n:400000
Cons ci ratio: 2.648095e-02	ci left: 5.124935e-02	ci right 5.262715e-02	k: 20774	n:400000
KS ci ratio: 1.013295e-01	ci left: 3.538566e-03	ci right 3.918679e-03	k: 1490	n:400000
DPF2   400000 perm   144 sec   (2785 perm/sec)   p_kst 3.725000e-03   p_cons 5.193500e-02   p_joint 3.067500e-03

Joint ci ratio: 1.100884e-01	ci left: 2.913161e-03	ci right 3.254897e-03	k: 1263	n:410000
Cons ci ratio: 2.615820e-02	ci left: 5.124962e-02	ci right 5.261038e-02	k: 21290	n:410000
KS ci ratio: 9.996391e-02	ci left: 3.549743e-03	ci right 3.925616e-03	k: 1531	n:410000
DPF2   410000 perm   149 sec   (2752 perm/sec)   p_kst 3.734146e-03   p_cons 5.192683e-02   p_joint 3.080488e-03

Joint ci ratio: 1.102676e-01	ci left: 2.834532e-03	ci right 3.167621e-03	k: 1259	n:420000
Cons ci ratio: 2.584136e-02	ci left: 5.127127e-02	ci right 5.261587e-02	k: 21815	n:420000
KS ci ratio: 9.903200e-02	ci left: 3.532554e-03	ci right 3.902916e-03	k: 1560	n:420000
DPF2   420000 perm   154 sec   (2719 perm/sec)   p_kst 3.714286e-03   p_cons 5.194048e-02   p_joint 2.997619e-03

Joint ci ratio: 1.136694e-01	ci left: 2.601321e-03	ci right 2.917067e-03	k: 1185	n:430000
Cons ci ratio: 2.552852e-02	ci left: 5.131974e-02	ci right 5.264909e-02	k: 22352	n:430000
KS ci ratio: 9.778672e-02	ci left: 3.541136e-03	ci right 3.907462e-03	k: 1600	n:430000
DPF2   430000 perm   160 sec   (2688 perm/sec)   p_kst 3.720930e-03   p_cons 5.198140e-02   p_joint 2.755814e-03

Joint ci ratio: 1.167222e-01	ci left: 2.407543e-03	ci right 2.708158e-03	k: 1124	n:440000
Cons ci ratio: 2.522270e-02	ci left: 5.138193e-02	ci right 5.269671e-02	k: 22896	n:440000
KS ci ratio: 9.685423e-02	ci left: 3.529394e-03	ci right 3.890826e-03	k: 1631	n:440000
DPF2   440000 perm   165 sec   (2659 perm/sec)   p_kst 3.706818e-03   p_cons 5.203636e-02   p_joint 2.554545e-03

Joint ci ratio: 1.150959e-01	ci left: 2.423093e-03	ci right 2.721147e-03	k: 1156	n:450000
Cons ci ratio: 2.493716e-02	ci left: 5.140388e-02	ci right 5.270412e-02	k: 23423	n:450000
KS ci ratio: 9.571710e-02	ci left: 3.535543e-03	ci right 3.893116e-03	k: 1670	n:450000
DPF2   450000 perm   171 sec   (2632 perm/sec)   p_kst 3.711111e-03   p_cons 5.205111e-02   p_joint 2.568889e-03

Joint ci ratio: 1.245777e-01	ci left: 2.013994e-03	ci right 2.283642e-03	k: 987	n:460000
Cons ci ratio: 2.462912e-02	ci left: 5.155247e-02	ci right 5.284013e-02	k: 24009	n:460000
KS ci ratio: 9.467469e-02	ci left: 3.537203e-03	ci right 3.890832e-03	k: 1707	n:460000
DPF2   460000 perm   177 sec   (2604 perm/sec)   p_kst 3.710870e-03   p_cons 5.219348e-02   p_joint 2.145652e-03

Joint ci ratio: 9.558129e-02	ci left: 3.395467e-03	ci right 3.738358e-03	k: 1675	n:470000
Cons ci ratio: 2.437040e-02	ci left: 5.154041e-02	ci right 5.281406e-02	k: 24522	n:470000
KS ci ratio: 9.369256e-02	ci left: 3.536735e-03	ci right 3.886448e-03	k: 1743	n:470000
DPF2   470000 perm   182 sec   (2578 perm/sec)   p_kst 3.708511e-03   p_cons 5.217447e-02   p_joint 3.563830e-03

Outputting figure to mutsig2_images.part000000000052/DPF2.5_1220_470000_0.0037085_0.052174_0.0035638.png
                gene_name: DPF2
               theta_stop: 0.096 
                    nperm: 470000 
                     p_ks: 0.0037 
        ci_ks_bounds_left: 0.0035 
       ci_ks_bounds_right: 0.0039 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.0036 
     ci_joint_bounds_left: 0.0034 
    ci_joint_bounds_right: 0.0037 

Current progress: 63 percent done.
DPYSL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.738921e-02	ci left: 1.601305e-01	ci right 1.748638e-01	k: 1674	n:10000
Cons ci ratio: 1.953336e-02	ci left: 7.931392e-01	ci right 8.088851e-01	k: 8011	n:10000
KS ci ratio: 1.019010e-01	ci left: 1.222933e-01	ci right 1.355237e-01	k: 1288	n:10000
DPYSL2   10000 perm   2 sec   (6053 perm/sec)   p_kst 1.288000e-01   p_cons 8.011000e-01   p_joint 1.674000e-01

Joint ci ratio: 5.278434e-02	ci left: 2.104124e-01	ci right 2.218702e-01	k: 4322	n:20000
Cons ci ratio: 1.377940e-02	ci left: 7.962570e-01	ci right 8.073551e-01	k: 16037	n:20000
KS ci ratio: 6.785568e-02	ci left: 1.381262e-01	ci right 1.478779e-01	k: 2859	n:20000
DPYSL2   20000 perm   4 sec   (5162 perm/sec)   p_kst 1.429500e-01   p_cons 8.018500e-01   p_joint 2.161000e-01

Outputting figure to mutsig2_images.part000000000052/DPYSL2.5_1775_20000_0.14295_0.80185_0.2161.png
                gene_name: DPYSL2
               theta_stop: 0.068 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 65 percent done.
DOLK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.484151e-02	ci left: 5.488018e-01	ci right 5.683640e-01	k: 5586	n:10000
KS ci ratio: 2.286705e-02	ci left: 7.374485e-01	ci right 7.546079e-01	k: 7461	n:10000
DOLK   10000 perm   2 sec   (5795 perm/sec)   p_kst 7.461000e-01   p_cons 5.586000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DOLK.4_1621_10000_0.7461_0.5586_1.png
                gene_name: DOLK
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
DPP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.259752e-02	ci left: 3.476023e-01	ci right 3.664811e-01	k: 3570	n:10000
Cons ci ratio: 3.454578e-02	ci left: 5.530107e-01	ci right 5.725527e-01	k: 5628	n:10000
KS ci ratio: 7.879218e-02	ci left: 1.905240e-01	ci right 2.062521e-01	k: 1983	n:10000
DPP3   10000 perm   2 sec   (5754 perm/sec)   p_kst 1.983000e-01   p_cons 5.628000e-01   p_joint 3.570000e-01

Outputting figure to mutsig2_images.part000000000052/DPP3.4_2282_10000_0.1983_0.5628_0.357.png
                gene_name: DPP3
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 69 percent done.
DPP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.381047e-02	ci left: 3.372686e-01	ci right 3.560208e-01	k: 3466	n:10000
Cons ci ratio: 5.192847e-02	ci left: 3.534668e-01	ci right 3.724131e-01	k: 3629	n:10000
KS ci ratio: 8.241153e-02	ci left: 1.768418e-01	ci right 1.921425e-01	k: 1844	n:10000
DPP4   10000 perm   2 sec   (5700 perm/sec)   p_kst 1.844000e-01   p_cons 3.629000e-01   p_joint 3.466000e-01

Outputting figure to mutsig2_images.part000000000052/DPP4.4_2405_10000_0.1844_0.3629_0.3466.png
                gene_name: DPP4
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 71 percent done.
DOK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.536721e-03	ci left: 9.505438e-01	ci right 9.587887e-01	k: 9548	n:10000
Cons ci ratio: 1.818042e-02	ci left: 8.153757e-01	ci right 8.304357e-01	k: 8230	n:10000
KS ci ratio: 1.653384e-02	ci left: 8.418309e-01	ci right 8.559652e-01	k: 8490	n:10000
DOK6   10000 perm   2 sec   (6534 perm/sec)   p_kst 8.490000e-01   p_cons 8.230000e-01   p_joint 9.548000e-01

Outputting figure to mutsig2_images.part000000000052/DOK6.3_1028_10000_0.849_0.823_0.9548.png
                gene_name: DOK6
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 73 percent done.
DOT1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.750894e-01	ci left: 1.716007e-02	ci right 2.272454e-02	k: 198	n:10000
Cons ci ratio: 1.663568e-01	ci left: 4.820949e-02	ci right 5.705342e-02	k: 525	n:10000
KS ci ratio: 2.198857e-01	ci left: 2.740624e-02	ci right 3.427066e-02	k: 307	n:10000
DOT1L   10000 perm   2 sec   (4399 perm/sec)   p_kst 3.070000e-02   p_cons 5.250000e-02   p_joint 1.980000e-02

Joint ci ratio: 1.020935e-01	ci left: 6.513471e-02	ci right 7.219132e-02	k: 1372	n:20000
Cons ci ratio: 1.168165e-01	ci left: 5.017833e-02	ci right 5.645233e-02	k: 1065	n:20000
KS ci ratio: 1.539460e-01	ci left: 2.897822e-02	ci right 3.385926e-02	k: 627	n:20000
DOT1L   20000 perm   5 sec   (4345 perm/sec)   p_kst 3.135000e-02   p_cons 5.325000e-02   p_joint 6.860000e-02

Joint ci ratio: 8.647785e-02	ci left: 6.132138e-02	ci right 6.689673e-02	k: 1922	n:30000
Cons ci ratio: 9.522378e-02	ci left: 5.091512e-02	ci right 5.603846e-02	k: 1603	n:30000
KS ci ratio: 1.262519e-01	ci left: 2.916455e-02	ci right 3.312694e-02	k: 933	n:30000
DOT1L   30000 perm   7 sec   (4194 perm/sec)   p_kst 3.110000e-02   p_cons 5.343333e-02   p_joint 6.406667e-02

Joint ci ratio: 1.178274e-01	ci left: 2.533639e-02	ci right 2.853278e-02	k: 1076	n:40000
Cons ci ratio: 8.250049e-02	ci left: 5.121669e-02	ci right 5.564842e-02	k: 2136	n:40000
KS ci ratio: 1.083244e-01	ci left: 2.998029e-02	ci right 3.343813e-02	k: 1267	n:40000
DOT1L   40000 perm   10 sec   (4054 perm/sec)   p_kst 3.167500e-02   p_cons 5.340000e-02   p_joint 2.690000e-02

Joint ci ratio: 1.185476e-01	ci left: 2.012998e-02	ci right 2.268601e-02	k: 1069	n:50000
Cons ci ratio: 7.372162e-02	ci left: 5.154354e-02	ci right 5.550850e-02	k: 2675	n:50000
KS ci ratio: 9.685697e-02	ci left: 3.018157e-02	ci right 3.327311e-02	k: 1585	n:50000
DOT1L   50000 perm   12 sec   (4011 perm/sec)   p_kst 3.170000e-02   p_cons 5.350000e-02   p_joint 2.138000e-02

Joint ci ratio: 1.087829e-01	ci left: 2.002980e-02	ci right 2.235017e-02	k: 1270	n:60000
Cons ci ratio: 6.735606e-02	ci left: 5.163072e-02	ci right 5.524596e-02	k: 3205	n:60000
KS ci ratio: 8.954675e-02	ci left: 2.956236e-02	ci right 3.234991e-02	k: 1856	n:60000
DOT1L   60000 perm   15 sec   (3965 perm/sec)   p_kst 3.093333e-02   p_cons 5.341667e-02   p_joint 2.116667e-02

Joint ci ratio: 8.711204e-02	ci left: 2.688822e-02	ci right 2.935111e-02	k: 1967	n:70000
Cons ci ratio: 6.242434e-02	ci left: 5.166141e-02	ci right 5.500430e-02	k: 3732	n:70000
KS ci ratio: 8.325188e-02	ci left: 2.942044e-02	ci right 3.199008e-02	k: 2148	n:70000
DOT1L   70000 perm   18 sec   (3823 perm/sec)   p_kst 3.068571e-02   p_cons 5.331429e-02   p_joint 2.810000e-02

Outputting figure to mutsig2_images.part000000000052/DOT1L.3_4726_70000_0.030686_0.053314_0.0281.png
                gene_name: DOT1L
               theta_stop: 0.087 
                    nperm: 70000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 75 percent done.
DPF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.263779e-02	ci left: 7.412900e-01	ci right 7.583643e-01	k: 7499	n:10000
Cons ci ratio: 1.372124e-02	ci left: 8.846253e-01	ci right 8.969460e-01	k: 8909	n:10000
KS ci ratio: 4.404582e-02	ci left: 4.321347e-01	ci right 4.516992e-01	k: 4419	n:10000
DPF3   10000 perm   2 sec   (6174 perm/sec)   p_kst 4.419000e-01   p_cons 8.909000e-01   p_joint 7.499000e-01

Outputting figure to mutsig2_images.part000000000052/DPF3.3_1110_10000_0.4419_0.8909_0.7499.png
                gene_name: DPF3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 77 percent done.
DPP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.041956e-02	ci left: 6.145218e-01	ci right 6.336059e-01	k: 6241	n:10000
Cons ci ratio: 7.050957e-02	ci left: 2.277054e-01	ci right 2.444486e-01	k: 2360	n:10000
KS ci ratio: 3.434269e-02	ci left: 5.559172e-01	ci right 5.754445e-01	k: 5657	n:10000
DPP6   10000 perm   2 sec   (5627 perm/sec)   p_kst 5.657000e-01   p_cons 2.360000e-01   p_joint 6.241000e-01

Outputting figure to mutsig2_images.part000000000052/DPP6.3_2818_10000_0.5657_0.236_0.6241.png
                gene_name: DPP6
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 79 percent done.
DPY19L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.801804e-02	ci left: 8.180184e-01	ci right 8.329915e-01	k: 8256	n:10000
KS ci ratio: 3.049091e-02	ci left: 6.134166e-01	ci right 6.325117e-01	k: 6230	n:10000
DPY19L3   10000 perm   2 sec   (5772 perm/sec)   p_kst 6.230000e-01   p_cons 8.256000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DPY19L3.3_2223_10000_0.623_0.8256_1.png
                gene_name: DPY19L3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
DPYSL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.487959e-02	ci left: 1.388391e-01	ci right 1.527680e-01	k: 1457	n:10000
KS ci ratio: 1.552846e-02	ci left: 8.575336e-01	ci right 8.710534e-01	k: 8644	n:10000
DPYSL3   10000 perm   2 sec   (5733 perm/sec)   p_kst 8.644000e-01   p_cons 1.457000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DPYSL3.3_1769_10000_0.8644_0.1457_1.png
                gene_name: DPYSL3
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
DPYSL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.396839e-01	ci left: 6.787957e-02	ci right 7.817082e-02	k: 729	n:10000
Cons ci ratio: 1.112712e-01	ci left: 1.042243e-01	ci right 1.166037e-01	k: 1103	n:10000
KS ci ratio: 9.015130e-02	ci left: 1.517848e-01	ci right 1.662144e-01	k: 1589	n:10000
DPYSL4   10000 perm   2 sec   (5364 perm/sec)   p_kst 1.589000e-01   p_cons 1.103000e-01   p_joint 7.290000e-02

Joint ci ratio: 7.357079e-02	ci left: 1.197082e-01	ci right 1.289013e-01	k: 2485	n:20000
Cons ci ratio: 7.818539e-02	ci left: 1.072678e-01	ci right 1.160454e-01	k: 2232	n:20000
KS ci ratio: 6.307669e-02	ci left: 1.567206e-01	ci right 1.669779e-01	k: 3236	n:20000
DPYSL4   20000 perm   4 sec   (4907 perm/sec)   p_kst 1.618000e-01   p_cons 1.116000e-01   p_joint 1.242500e-01

Outputting figure to mutsig2_images.part000000000052/DPYSL4.3_1775_20000_0.1618_0.1116_0.12425.png
                gene_name: DPYSL4
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 85 percent done.
DNASE1L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.189710e-03	ci left: 9.865389e-01	ci right 9.907693e-01	k: 9888	n:10000
Cons ci ratio: 4.295548e-02	ci left: 4.445057e-01	ci right 4.641209e-01	k: 4543	n:10000
KS ci ratio: 3.131434e-02	ci left: 6.007610e-01	ci right 6.199746e-01	k: 6104	n:10000
DNASE1L3   10000 perm   1 sec   (7134 perm/sec)   p_kst 6.104000e-01   p_cons 4.543000e-01   p_joint 9.888000e-01

Outputting figure to mutsig2_images.part000000000052/DNASE1L3.2_950_10000_0.6104_0.4543_0.9888.png
                gene_name: DNASE1L3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 87 percent done.
DOC2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.689963e-02	ci left: 8.360254e-01	ci right 8.503741e-01	k: 8433	n:10000
Cons ci ratio: 3.067289e-02	ci left: 6.106037e-01	ci right 6.297263e-01	k: 6202	n:10000
KS ci ratio: 1.054524e-01	ci left: 1.149621e-01	ci right 1.278593e-01	k: 1213	n:10000
DOC2A   10000 perm   1 sec   (6844 perm/sec)   p_kst 1.213000e-01   p_cons 6.202000e-01   p_joint 8.433000e-01

Joint ci ratio: 5.157609e-02	ci left: 2.182868e-01	ci right 2.298935e-01	k: 4481	n:20000
Cons ci ratio: 2.188851e-02	ci left: 6.091178e-01	ci right 6.226485e-01	k: 12318	n:20000
KS ci ratio: 7.568944e-02	ci left: 1.137564e-01	ci right 1.227549e-01	k: 2364	n:20000
DOC2A   20000 perm   3 sec   (6031 perm/sec)   p_kst 1.182000e-01   p_cons 6.159000e-01   p_joint 2.240500e-01

Outputting figure to mutsig2_images.part000000000052/DOC2A.2_1243_20000_0.1182_0.6159_0.22405.png
                gene_name: DOC2A
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 88 percent done.
DOK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.440474e-02	ci left: 4.281453e-01	ci right 4.476909e-01	k: 4379	n:10000
Cons ci ratio: 5.815626e-02	ci left: 3.032226e-01	ci right 3.214868e-01	k: 3123	n:10000
KS ci ratio: 6.956496e-02	ci left: 2.325450e-01	ci right 2.494061e-01	k: 2409	n:10000
DOK1   10000 perm   2 sec   (6235 perm/sec)   p_kst 2.409000e-01   p_cons 3.123000e-01   p_joint 4.379000e-01

Outputting figure to mutsig2_images.part000000000052/DOK1.2_1466_10000_0.2409_0.3123_0.4379.png
                gene_name: DOK1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 90 percent done.
DONSON
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.625609e-02	ci left: 4.082083e-01	ci right 4.276396e-01	k: 4179	n:10000
Cons ci ratio: 3.325128e-02	ci left: 5.717587e-01	ci right 5.911938e-01	k: 5815	n:10000
KS ci ratio: 7.258412e-02	ci left: 2.175373e-01	ci right 2.340227e-01	k: 2257	n:10000
DONSON   10000 perm   2 sec   (6303 perm/sec)   p_kst 2.257000e-01   p_cons 5.815000e-01   p_joint 4.179000e-01

Outputting figure to mutsig2_images.part000000000052/DONSON.2_1741_10000_0.2257_0.5815_0.4179.png
                gene_name: DONSON
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 92 percent done.
DPAGT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.096898e-02	ci left: 1.494297e-01	ci right 1.637710e-01	k: 1565	n:10000
KS ci ratio: 4.105657e-02	ci left: 4.669687e-01	ci right 4.866448e-01	k: 4768	n:10000
DPAGT1   10000 perm   2 sec   (6553 perm/sec)   p_kst 4.768000e-01   p_cons 1.565000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000052/DPAGT1.2_1263_10000_0.4768_0.1565_1.png
                gene_name: DPAGT1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
DPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.954049e-02	ci left: 4.857530e-01	ci right 5.054495e-01	k: 4956	n:10000
Cons ci ratio: 4.084326e-02	ci left: 4.695657e-01	ci right 4.892463e-01	k: 4794	n:10000
KS ci ratio: 3.028360e-02	ci left: 6.166318e-01	ci right 6.356946e-01	k: 6262	n:10000
DPH1   10000 perm   2 sec   (6500 perm/sec)   p_kst 6.262000e-01   p_cons 4.794000e-01   p_joint 4.956000e-01

Outputting figure to mutsig2_images.part000000000052/DPH1.2_1380_10000_0.6262_0.4794_0.4956.png
                gene_name: DPH1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 96 percent done.
DPP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.947729e-02	ci left: 4.865527e-01	ci right 5.062494e-01	k: 4964	n:10000
Cons ci ratio: 2.039137e-03	ci left: 9.961927e-01	ci right 9.983009e-01	k: 9974	n:10000
KS ci ratio: 1.154273e-01	ci left: 9.740099e-02	ci right 1.094311e-01	k: 1033	n:10000
DPP7   10000 perm   2 sec   (5828 perm/sec)   p_kst 1.033000e-01   p_cons 9.974000e-01   p_joint 4.964000e-01

Joint ci ratio: 3.294743e-02	ci left: 4.075606e-01	ci right 4.212643e-01	k: 8288	n:20000
Cons ci ratio: 1.256144e-03	ci left: 9.972776e-01	ci right 9.985708e-01	k: 19960	n:20000
KS ci ratio: 8.159898e-02	ci left: 9.921306e-02	ci right 1.077026e-01	k: 2068	n:20000
DPP7   20000 perm   4 sec   (5474 perm/sec)   p_kst 1.034000e-01   p_cons 9.980000e-01   p_joint 4.144000e-01

Outputting figure to mutsig2_images.part000000000052/DPP7.2_1531_20000_0.1034_0.998_0.4144.png
                gene_name: DPP7
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 98 percent done.
DPY30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.249378e-02	ci left: 1.765467e-01	ci right 1.918378e-01	k: 1841	n:10000
Cons ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
KS ci ratio: 1.794921e-02	ci left: 8.191366e-01	ci right 8.340726e-01	k: 8267	n:10000
DPY30   10000 perm   1 sec   (7443 perm/sec)   p_kst 8.267000e-01   p_cons 1.072000e-01   p_joint 1.841000e-01

Joint ci ratio: 1.717596e-02	ci left: 7.162877e-01	ci right 7.287475e-01	k: 14451	n:20000
Cons ci ratio: 8.034850e-02	ci left: 1.020608e-01	ci right 1.106540e-01	k: 2126	n:20000
KS ci ratio: 1.271365e-02	ci left: 8.208760e-01	ci right 8.314290e-01	k: 16524	n:20000
DPY30   20000 perm   3 sec   (6374 perm/sec)   p_kst 8.262000e-01   p_cons 1.063000e-01   p_joint 7.225500e-01

Outputting figure to mutsig2_images.part000000000052/DPY30.2_316_20000_0.8262_0.1063_0.72255.png
                gene_name: DPY30
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000052
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 52 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1704>
Subject: Job 9893919: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1704>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000053> was used as the working directory.
Started at Sat Oct  6 00:05:46 2012
Results reported at Sat Oct  6 00:16:57 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000053.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000053.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 53  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000053.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    689.44 sec.
    Max Memory :      3497 MB
    Max Swap   :      5897 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
53
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 53
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 53: processing genes 4689 - 4778
Calculating significance of each gene.
Using projection method.
4689	DRAM1	1
4690	DRAM2	6.636647e-03
4691	DRAP1	1
4692	DRD1	8.838619e-01
4693	DRD2	3.541229e-01
4694	DRD3	3.464902e-01
4695	DRD4	1
4696	DRD5	2.100352e-01
4697	DRG1	3.245690e-01
In gene DRG2 the following bins exceed PROBCAP:
    COAD-AA-3561	categ 6	N = 1147    n = 1	mu =   1.72e-07
4698	DRG2	6.027373e-01
4699	DRGX	3.265514e-01
4700	DRP2	1.444986e-01
4701	DSC1	2.494167e-01
4702	DSC2	8.580997e-01
4703	DSC3	5.406214e-01
4704	DSCAM	7.150340e-01
4705	DSCAML1	4.585273e-01
4706	DSCC1	6.363527e-01
4707	DSCR3	5.804802e-01
4708	DSCR4	4.153963e-01
4709	DSCR6	1
4710	DSE	9.260054e-01
4711	DSEL	3.156397e-04
4712	DSG1	3.068536e-01
4713	DSG2	5.878863e-01
4714	DSG3	3.159259e-01
4715	DSG4	5.239104e-01
4716	DSN1	7.787315e-01
4717	DSP	7.580073e-01
4718	DSPP	5.182908e-02
4719	DST	6.885406e-01
4720	DSTN	3.478906e-02
4721	DSTYK	9.662591e-01
4722	DTD1	7.635872e-02
4723	DTL	3.989659e-01
4724	DTNA	4.239579e-01
4725	DTNB	9.724031e-01
4726	DTNBP1	7.202823e-01
4727	DTWD1	3.700789e-02
4728	DTWD2	2.017060e-01
4729	DTX1	3.920725e-01
4730	DTX2	4.008699e-01
4731	DTX3	8.919584e-01
4732	DTX3L	7.871387e-01
4733	DTX4	4.775103e-01
4734	DTYMK	1.008713e-01
4735	DULLARD	1
4736	DUOX1	8.468068e-01
4737	DUOX2	2.513362e-01
4738	DUOXA1	7.909213e-01
4739	DUOXA2	6.915909e-01
4740	DUPD1	1
4741	DUS1L	1
4742	DUS2L	1
4743	DUS3L	9.851244e-01
4744	DUS4L	2.538789e-01
4745	DUSP1	1.756762e-01
4746	DUSP10	5.612194e-02
4747	DUSP11	5.173350e-01
4748	DUSP12	1
4749	DUSP13	6.085521e-01
4750	DUSP14	1
4751	DUSP15	3.696947e-01
In gene DUSP16 the following bins exceed PROBCAP:
    READ-AG-3584	categ 6	N = 2022    n = 1	mu =   1.72e-07
4752	DUSP16	1.893495e-01
4753	DUSP18	5.982825e-01
4754	DUSP19	2.899283e-01
4755	DUSP2	1
4756	DUSP21	1
4757	DUSP22	4.845089e-02
4758	DUSP23	1
4759	DUSP26	6.192555e-01
4760	DUSP27	1.342478e-01
4761	DUSP28	1
4762	DUSP3	4.315822e-01
4763	DUSP4	9.551497e-01
4764	DUSP5	5.040804e-01
4765	DUSP6	2.881274e-02
4766	DUSP7	3.044597e-01
4767	DUSP8	1
4768	DUSP9	6.635867e-01
4769	DUT	1
4770	DUXA	3.006866e-01
4771	DVL1	1
4772	DVL2	1.359653e-01
4773	DVL3	7.224769e-01
4774	DYDC1	3.016688e-02
4775	DYDC2	4.794666e-02
4776	DYM	4.767866e-01
4777	DYNC1H1	9.516984e-01
4778	DYNC1I1	1.241349e-01
Done

Running MutSig 2:
Scatter job 53: processing genes 4689 - 4778
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DST
Processing conservation and coverage...
48% 97% 
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.717051e-02	ci left: 1.608181e-01	ci right 1.755758e-01	k: 1681	n:10000
Cons ci ratio: 7.681687e-02	ci left: 1.986025e-01	ci right 2.145687e-01	k: 2065	n:10000
KS ci ratio: 6.568770e-02	ci left: 2.538964e-01	ci right 2.712421e-01	k: 2625	n:10000
DST   10000 perm   5 sec   (2054 perm/sec)   p_kst 2.625000e-01   p_cons 2.065000e-01   p_joint 1.681000e-01

Outputting figure to mutsig2_images.part000000000053/DST.38_20492_10000_0.2625_0.2065_0.1681.png
                gene_name: DST
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 2 percent done.
DSEL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.189000e-02	ci left: 5.920266e-01	ci right 6.113142e-01	k: 6017	n:10000
Cons ci ratio: 6.677346e-02	ci left: 2.476661e-01	ci right 2.648761e-01	k: 2562	n:10000
KS ci ratio: 2.089762e-02	ci left: 7.704332e-01	ci right 7.868042e-01	k: 7787	n:10000
DSEL   10000 perm   2 sec   (4111 perm/sec)   p_kst 7.787000e-01   p_cons 2.562000e-01   p_joint 6.017000e-01

Outputting figure to mutsig2_images.part000000000053/DSEL.20_3673_10000_0.7787_0.2562_0.6017.png
                gene_name: DSEL
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 4 percent done.
DYNC1H1
Processing conservation and coverage...
70% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.605153e-02	ci left: 5.318734e-01	ci right 5.515023e-01	k: 5417	n:10000
Cons ci ratio: 6.836926e-02	ci left: 2.388684e-01	ci right 2.558790e-01	k: 2473	n:10000
KS ci ratio: 1.643706e-02	ci left: 8.433592e-01	ci right 8.574360e-01	k: 8505	n:10000
DYNC1H1   10000 perm   3 sec   (2887 perm/sec)   p_kst 8.505000e-01   p_cons 2.473000e-01   p_joint 5.417000e-01

Outputting figure to mutsig2_images.part000000000053/DYNC1H1.17_14253_10000_0.8505_0.2473_0.5417.png
                gene_name: DYNC1H1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 5 percent done.
DSCAML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.098228e-01	ci left: 1.067607e-01	ci right 1.192658e-01	k: 1129	n:10000
Cons ci ratio: 4.643716e-02	ci left: 4.063151e-01	ci right 4.257338e-01	k: 4160	n:10000
KS ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
DSCAML1   10000 perm   2 sec   (4213 perm/sec)   p_kst 6.170000e-02   p_cons 4.160000e-01   p_joint 1.129000e-01

Joint ci ratio: 7.814601e-02	ci left: 1.073661e-01	ci right 1.161471e-01	k: 2234	n:20000
Cons ci ratio: 3.079665e-02	ci left: 4.405918e-01	ci right 4.544234e-01	k: 8950	n:20000
KS ci ratio: 1.078584e-01	ci left: 5.859920e-02	ci right 6.532884e-02	k: 1238	n:20000
DSCAML1   20000 perm   5 sec   (3833 perm/sec)   p_kst 6.190000e-02   p_cons 4.475000e-01   p_joint 1.117000e-01

Joint ci ratio: 5.511226e-02	ci left: 1.403086e-01	ci right 1.482937e-01	k: 4328	n:30000
Cons ci ratio: 2.501092e-02	ci left: 4.445253e-01	ci right 4.558177e-01	k: 13505	n:30000
KS ci ratio: 8.652594e-02	ci left: 6.125606e-02	ci right 6.682873e-02	k: 1920	n:30000
DSCAML1   30000 perm   8 sec   (3698 perm/sec)   p_kst 6.400000e-02   p_cons 4.501667e-01   p_joint 1.442667e-01

Outputting figure to mutsig2_images.part000000000053/DSCAML1.14_6474_30000_0.064_0.45017_0.14427.png
                gene_name: DSCAML1
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 7 percent done.
DSCAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.191022e-02	ci left: 1.467809e-01	ci right 1.610214e-01	k: 1538	n:10000
Cons ci ratio: 1.472195e-01	ci left: 6.130724e-02	ci right 7.114729e-02	k: 661	n:10000
KS ci ratio: 7.295982e-02	ci left: 2.157611e-01	ci right 2.322000e-01	k: 2239	n:10000
DSCAM   10000 perm   3 sec   (3862 perm/sec)   p_kst 2.239000e-01   p_cons 6.610000e-02   p_joint 1.538000e-01

Joint ci ratio: 9.958521e-02	ci left: 6.830848e-02	ci right 7.551658e-02	k: 1437	n:20000
Cons ci ratio: 1.007603e-01	ci left: 6.679456e-02	ci right 7.393096e-02	k: 1406	n:20000
KS ci ratio: 5.120811e-02	ci left: 2.207637e-01	ci right 2.324159e-01	k: 4531	n:20000
DSCAM   20000 perm   6 sec   (3595 perm/sec)   p_kst 2.265500e-01   p_cons 7.030000e-02   p_joint 7.185000e-02

Joint ci ratio: 7.128489e-02	ci left: 8.829322e-02	ci right 9.485279e-02	k: 2746	n:30000
Cons ci ratio: 8.387451e-02	ci left: 6.501313e-02	ci right 7.073756e-02	k: 2035	n:30000
KS ci ratio: 4.146451e-02	ci left: 2.247513e-01	ci right 2.343012e-01	k: 6885	n:30000
DSCAM   30000 perm   9 sec   (3487 perm/sec)   p_kst 2.295000e-01   p_cons 6.783333e-02   p_joint 9.153333e-02

Outputting figure to mutsig2_images.part000000000053/DSCAM.12_6171_30000_0.2295_0.067833_0.091533.png
                gene_name: DSCAM
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.095 

Current progress: 9 percent done.
DSP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.831215e-02	ci left: 3.872920e-01	ci right 4.065681e-01	k: 3969	n:10000
Cons ci ratio: 6.647702e-02	ci left: 2.493471e-01	ci right 2.665941e-01	k: 2579	n:10000
KS ci ratio: 4.543874e-02	ci left: 4.168789e-01	ci right 4.363639e-01	k: 4266	n:10000
DSP   10000 perm   3 sec   (3721 perm/sec)   p_kst 4.266000e-01   p_cons 2.579000e-01   p_joint 3.969000e-01

Outputting figure to mutsig2_images.part000000000053/DSP.12_8712_10000_0.4266_0.2579_0.3969.png
                gene_name: DSP
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 11 percent done.
DSG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.946770e-02	ci left: 2.938030e-01	ci right 3.119119e-01	k: 3028	n:10000
Cons ci ratio: 5.540393e-02	ci left: 3.242591e-01	ci right 3.428380e-01	k: 3335	n:10000
KS ci ratio: 5.489697e-02	ci left: 3.283299e-01	ci right 3.469648e-01	k: 3376	n:10000
DSG4   10000 perm   2 sec   (4164 perm/sec)   p_kst 3.376000e-01   p_cons 3.335000e-01   p_joint 3.028000e-01

Outputting figure to mutsig2_images.part000000000053/DSG4.9_3308_10000_0.3376_0.3335_0.3028.png
                gene_name: DSG4
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 12 percent done.
DUOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.562625e-01	ci left: 5.455711e-02	ci right 6.390171e-02	k: 591	n:10000
Cons ci ratio: 3.446164e-02	ci left: 5.542133e-01	ci right 5.737494e-01	k: 5640	n:10000
KS ci ratio: 2.305278e-01	ci left: 2.485465e-02	ci right 3.142409e-02	k: 280	n:10000
DUOX2   10000 perm   2 sec   (4583 perm/sec)   p_kst 2.800000e-02   p_cons 5.640000e-01   p_joint 5.910000e-02

Joint ci ratio: 1.471848e-01	ci left: 3.172413e-02	ci right 3.681244e-02	k: 684	n:20000
Cons ci ratio: 2.582953e-02	ci left: 5.282580e-01	ci right 5.421318e-01	k: 10704	n:20000
KS ci ratio: 1.603879e-01	ci left: 2.666999e-02	ci right 3.136827e-02	k: 579	n:20000
DUOX2   20000 perm   5 sec   (4150 perm/sec)   p_kst 2.895000e-02   p_cons 5.352000e-01   p_joint 3.420000e-02

Joint ci ratio: 9.719201e-02	ci left: 4.892819e-02	ci right 5.395913e-02	k: 1542	n:30000
Cons ci ratio: 2.060193e-02	ci left: 5.411793e-01	ci right 5.524783e-01	k: 16405	n:30000
KS ci ratio: 1.330994e-01	ci left: 2.622685e-02	ci right 2.999862e-02	k: 842	n:30000
DUOX2   30000 perm   8 sec   (3983 perm/sec)   p_kst 2.806667e-02   p_cons 5.468333e-01   p_joint 5.140000e-02

Joint ci ratio: 8.538853e-02	ci left: 4.790890e-02	ci right 5.220672e-02	k: 2001	n:40000
Cons ci ratio: 1.782790e-02	ci left: 5.423312e-01	ci right 5.521119e-01	k: 21889	n:40000
KS ci ratio: 1.153207e-01	ci left: 2.645373e-02	ci right 2.971527e-02	k: 1122	n:40000
DUOX2   40000 perm   10 sec   (3863 perm/sec)   p_kst 2.805000e-02   p_cons 5.472250e-01   p_joint 5.002500e-02

Joint ci ratio: 7.052046e-02	ci left: 5.614390e-02	ci right 6.026758e-02	k: 2909	n:50000
Cons ci ratio: 1.595696e-02	ci left: 5.425041e-01	ci right 5.512505e-01	k: 27344	n:50000
KS ci ratio: 1.023519e-01	ci left: 2.703942e-02	ci right 2.997566e-02	k: 1424	n:50000
DUOX2   50000 perm   13 sec   (3779 perm/sec)   p_kst 2.848000e-02   p_cons 5.468800e-01   p_joint 5.818000e-02

Joint ci ratio: 5.926963e-02	ci left: 6.593250e-02	ci right 6.997608e-02	k: 4076	n:60000
Cons ci ratio: 1.497392e-02	ci left: 5.291815e-01	ci right 5.371819e-01	k: 31991	n:60000
KS ci ratio: 9.290429e-02	ci left: 2.747629e-02	ci right 3.016954e-02	k: 1728	n:60000
DUOX2   60000 perm   16 sec   (3703 perm/sec)   p_kst 2.880000e-02   p_cons 5.331833e-01   p_joint 6.793333e-02

Outputting figure to mutsig2_images.part000000000053/DUOX2.9_4779_60000_0.0288_0.53318_0.067933.png
                gene_name: DUOX2
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.070 

Current progress: 14 percent done.
DUSP27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.994177e-02	ci left: 6.219580e-01	ci right 6.409654e-01	k: 6315	n:10000
Cons ci ratio: 2.998038e-02	ci left: 6.213549e-01	ci right 6.403688e-01	k: 6309	n:10000
KS ci ratio: 5.211988e-02	ci left: 3.517769e-01	ci right 3.707040e-01	k: 3612	n:10000
DUSP27   10000 perm   2 sec   (4378 perm/sec)   p_kst 3.612000e-01   p_cons 6.309000e-01   p_joint 6.315000e-01

Outputting figure to mutsig2_images.part000000000053/DUSP27.9_3497_10000_0.3612_0.6309_0.6315.png
                gene_name: DUSP27
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 16 percent done.
DVL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.624806e-01	ci left: 5.051566e-02	ci right 5.954576e-02	k: 549	n:10000
Cons ci ratio: 3.383534e-02	ci left: 5.632351e-01	ci right 5.827224e-01	k: 5730	n:10000
KS ci ratio: 2.689486e-01	ci left: 1.799971e-02	ci right 2.368423e-02	k: 207	n:10000
DVL2   10000 perm   2 sec   (4297 perm/sec)   p_kst 2.070000e-02   p_cons 5.730000e-01   p_joint 5.490000e-02

Joint ci ratio: 1.277643e-01	ci left: 4.207135e-02	ci right 4.786188e-02	k: 898	n:20000
Cons ci ratio: 2.379976e-02	ci left: 5.687146e-01	ci right 5.824634e-01	k: 11512	n:20000
KS ci ratio: 1.872141e-01	ci left: 1.943921e-02	ci right 2.350157e-02	k: 428	n:20000
DVL2   20000 perm   5 sec   (4229 perm/sec)   p_kst 2.140000e-02   p_cons 5.756000e-01   p_joint 4.490000e-02

Joint ci ratio: 1.196653e-01	ci left: 3.246326e-02	ci right 3.662751e-02	k: 1035	n:30000
Cons ci ratio: 1.937057e-02	ci left: 5.715526e-01	ci right 5.827658e-01	k: 17315	n:30000
KS ci ratio: 1.592367e-01	ci left: 1.822150e-02	ci right 2.140579e-02	k: 593	n:30000
DVL2   30000 perm   7 sec   (4171 perm/sec)   p_kst 1.976667e-02   p_cons 5.771667e-01   p_joint 3.450000e-02

Joint ci ratio: 1.059322e-01	ci left: 3.134394e-02	ci right 3.487427e-02	k: 1323	n:40000
Cons ci ratio: 1.671693e-02	ci left: 5.740184e-01	ci right 5.837202e-01	k: 23155	n:40000
KS ci ratio: 1.404580e-01	ci left: 1.775699e-02	ci right 2.046346e-02	k: 763	n:40000
DVL2   40000 perm   10 sec   (4112 perm/sec)   p_kst 1.907500e-02   p_cons 5.788750e-01   p_joint 3.307500e-02

Joint ci ratio: 9.601613e-02	ci left: 3.070894e-02	ci right 3.382567e-02	k: 1612	n:50000
Cons ci ratio: 1.490912e-02	ci left: 5.759397e-01	ci right 5.846110e-01	k: 29014	n:50000
KS ci ratio: 1.271308e-01	ci left: 1.747251e-02	ci right 1.986384e-02	k: 932	n:50000
DVL2   50000 perm   12 sec   (4053 perm/sec)   p_kst 1.864000e-02   p_cons 5.802800e-01   p_joint 3.224000e-02

Joint ci ratio: 8.523655e-02	ci left: 3.259678e-02	ci right 3.551518e-02	k: 2042	n:60000
Cons ci ratio: 1.383343e-02	ci left: 5.683629e-01	ci right 5.762968e-01	k: 34340	n:60000
KS ci ratio: 1.138762e-01	ci left: 1.826274e-02	ci right 2.048410e-02	k: 1161	n:60000
DVL2   60000 perm   15 sec   (3975 perm/sec)   p_kst 1.935000e-02   p_cons 5.723333e-01   p_joint 3.403333e-02

Joint ci ratio: 8.179085e-02	ci left: 3.047043e-02	ci right 3.308286e-02	k: 2223	n:70000
Cons ci ratio: 1.280631e-02	ci left: 5.686964e-01	ci right 5.760405e-01	k: 40066	n:70000
KS ci ratio: 1.054554e-01	ci left: 1.833540e-02	ci right 2.039043e-02	k: 1354	n:70000
DVL2   70000 perm   18 sec   (3911 perm/sec)   p_kst 1.934286e-02   p_cons 5.723714e-01   p_joint 3.175714e-02

Joint ci ratio: 7.798981e-02	ci left: 2.941732e-02	ci right 3.181688e-02	k: 2448	n:80000
Cons ci ratio: 1.197517e-02	ci left: 5.691006e-01	ci right 5.759692e-01	k: 45803	n:80000
KS ci ratio: 9.931941e-02	ci left: 1.815054e-02	ci right 2.005956e-02	k: 1527	n:80000
DVL2   80000 perm   21 sec   (3827 perm/sec)   p_kst 1.908750e-02   p_cons 5.725375e-01   p_joint 3.060000e-02

Outputting figure to mutsig2_images.part000000000053/DVL2.9_2271_80000_0.019088_0.57254_0.0306.png
                gene_name: DVL2
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 18 percent done.
DSC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.501845e-02	ci left: 5.462969e-01	ci right 5.658704e-01	k: 5561	n:10000
Cons ci ratio: 2.260762e-02	ci left: 7.417955e-01	ci right 7.588585e-01	k: 7504	n:10000
KS ci ratio: 6.264161e-02	ci left: 2.725021e-01	ci right 2.902255e-01	k: 2813	n:10000
DSC1   10000 perm   2 sec   (4903 perm/sec)   p_kst 2.813000e-01   p_cons 7.504000e-01   p_joint 5.561000e-01

Outputting figure to mutsig2_images.part000000000053/DSC1.8_2789_10000_0.2813_0.7504_0.5561.png
                gene_name: DSC1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 19 percent done.
DSG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
Cons ci ratio: 1.833676e-01	ci left: 3.968114e-02	ci right 4.778736e-02	k: 436	n:10000
KS ci ratio: 5.870215e-02	ci left: 2.992559e-01	ci right 3.174558e-01	k: 3083	n:10000
DSG1   10000 perm   2 sec   (5091 perm/sec)   p_kst 3.083000e-01   p_cons 4.360000e-02   p_joint 8.370000e-02

Joint ci ratio: 8.073127e-02	ci left: 1.011769e-01	ci right 1.097382e-01	k: 2108	n:20000
Cons ci ratio: 1.338834e-01	ci left: 3.834219e-02	ci right 4.389223e-02	k: 821	n:20000
KS ci ratio: 4.222504e-02	ci left: 2.947466e-01	ci right 3.075112e-01	k: 6022	n:20000
DSG1   20000 perm   4 sec   (4585 perm/sec)   p_kst 3.011000e-01   p_cons 4.105000e-02   p_joint 1.054000e-01

Joint ci ratio: 7.364037e-02	ci left: 8.311316e-02	ci right 8.950055e-02	k: 2588	n:30000
Cons ci ratio: 1.105372e-01	ci left: 3.800521e-02	ci right 4.248439e-02	k: 1206	n:30000
KS ci ratio: 3.459578e-02	ci left: 2.944857e-01	ci right 3.048865e-01	k: 8990	n:30000
DSG1   30000 perm   7 sec   (4391 perm/sec)   p_kst 2.996667e-01   p_cons 4.020000e-02   p_joint 8.626667e-02

Joint ci ratio: 6.400831e-02	ci left: 8.297447e-02	ci right 8.848584e-02	k: 3428	n:40000
Cons ci ratio: 9.791489e-02	ci left: 3.663558e-02	ci right 4.043179e-02	k: 1540	n:40000
KS ci ratio: 2.985767e-02	ci left: 2.966314e-01	ci right 3.056475e-01	k: 12045	n:40000
DSG1   40000 perm   9 sec   (4242 perm/sec)   p_kst 3.011250e-01   p_cons 3.850000e-02   p_joint 8.570000e-02

Outputting figure to mutsig2_images.part000000000053/DSG1.8_3210_40000_0.30112_0.0385_0.0857.png
                gene_name: DSG1
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.088 

Current progress: 21 percent done.
DSG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.663624e-02	ci left: 6.748860e-01	ci right 6.932067e-01	k: 6841	n:10000
Cons ci ratio: 5.556630e-02	ci left: 3.229685e-01	ci right 3.415293e-01	k: 3322	n:10000
KS ci ratio: 3.775496e-02	ci left: 5.088528e-01	ci right 5.285363e-01	k: 5187	n:10000
DSG3   10000 perm   2 sec   (4554 perm/sec)   p_kst 5.187000e-01   p_cons 3.322000e-01   p_joint 6.841000e-01

Outputting figure to mutsig2_images.part000000000053/DSG3.8_3064_10000_0.5187_0.3322_0.6841.png
                gene_name: DSG3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 23 percent done.
DRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.795385e-02	ci left: 3.047104e-01	ci right 3.229982e-01	k: 3138	n:10000
Cons ci ratio: 8.948304e-02	ci left: 1.537479e-01	ci right 1.682502e-01	k: 1609	n:10000
KS ci ratio: 4.111420e-02	ci left: 4.662695e-01	ci right 4.859444e-01	k: 4761	n:10000
DRP2   10000 perm   2 sec   (4793 perm/sec)   p_kst 4.761000e-01   p_cons 1.609000e-01   p_joint 3.138000e-01

Outputting figure to mutsig2_images.part000000000053/DRP2.7_2962_10000_0.4761_0.1609_0.3138.png
                gene_name: DRP2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 25 percent done.
DSPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.137174e-02	ci left: 3.584380e-01	ci right 3.774390e-01	k: 3679	n:10000
Cons ci ratio: 5.635179e-02	ci left: 3.168145e-01	ci right 3.352869e-01	k: 3260	n:10000
KS ci ratio: 4.790096e-02	ci left: 3.913742e-01	ci right 4.106835e-01	k: 4010	n:10000
DSPP   10000 perm   2 sec   (4666 perm/sec)   p_kst 4.010000e-01   p_cons 3.260000e-01   p_joint 3.679000e-01

Outputting figure to mutsig2_images.part000000000053/DSPP.7_3922_10000_0.401_0.326_0.3679.png
                gene_name: DSPP
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 26 percent done.
DUOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.267076e-02	ci left: 4.477990e-01	ci right 4.674257e-01	k: 4576	n:10000
Cons ci ratio: 3.881972e-02	ci left: 4.949504e-01	ci right 5.146468e-01	k: 5048	n:10000
KS ci ratio: 5.879861e-02	ci left: 2.985619e-01	ci right 3.167503e-01	k: 3076	n:10000
DUOX1   10000 perm   2 sec   (4589 perm/sec)   p_kst 3.076000e-01   p_cons 5.048000e-01   p_joint 4.576000e-01

Outputting figure to mutsig2_images.part000000000053/DUOX1.7_4788_10000_0.3076_0.5048_0.4576.png
                gene_name: DUOX1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 28 percent done.
DYNC1I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.557882e-02	ci left: 3.228692e-01	ci right 3.414287e-01	k: 3321	n:10000
Cons ci ratio: 8.783046e-02	ci left: 1.587554e-01	ci right 1.734397e-01	k: 1660	n:10000
KS ci ratio: 4.550381e-02	ci left: 4.161812e-01	ci right 4.356620e-01	k: 4259	n:10000
DYNC1I1   10000 perm   2 sec   (5430 perm/sec)   p_kst 4.259000e-01   p_cons 1.660000e-01   p_joint 3.321000e-01

Outputting figure to mutsig2_images.part000000000053/DYNC1I1.7_2002_10000_0.4259_0.166_0.3321.png
                gene_name: DYNC1I1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 30 percent done.
DRD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.536699e-02	ci left: 2.557759e-01	ci right 2.731615e-01	k: 2644	n:10000
Cons ci ratio: 8.853449e-02	ci left: 1.565950e-01	ci right 1.712014e-01	k: 1638	n:10000
KS ci ratio: 4.185486e-02	ci left: 4.573820e-01	ci right 4.770371e-01	k: 4672	n:10000
DRD5   10000 perm   2 sec   (5587 perm/sec)   p_kst 4.672000e-01   p_cons 1.638000e-01   p_joint 2.644000e-01

Outputting figure to mutsig2_images.part000000000053/DRD5.6_1438_10000_0.4672_0.1638_0.2644.png
                gene_name: DRD5
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 32 percent done.
DRD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.027820e-02	ci left: 7.807680e-01	ci right 7.968634e-01	k: 7889	n:10000
Cons ci ratio: 5.225565e-02	ci left: 3.505841e-01	ci right 3.694975e-01	k: 3600	n:10000
KS ci ratio: 1.084238e-02	ci left: 9.237903e-01	ci right 9.339582e-01	k: 9290	n:10000
DRD2   10000 perm   2 sec   (6015 perm/sec)   p_kst 9.290000e-01   p_cons 3.600000e-01   p_joint 7.889000e-01

Outputting figure to mutsig2_images.part000000000053/DRD2.5_1360_10000_0.929_0.36_0.7889.png
                gene_name: DRD2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 33 percent done.
DSG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.353182e-02	ci left: 1.423679e-01	ci right 1.564370e-01	k: 1493	n:10000
Cons ci ratio: 6.358403e-02	ci left: 2.665620e-01	ci right 2.841691e-01	k: 2753	n:10000
KS ci ratio: 1.497797e-01	ci left: 5.928045e-02	ci right 6.897537e-02	k: 640	n:10000
DSG2   10000 perm   2 sec   (5011 perm/sec)   p_kst 6.400000e-02   p_cons 2.753000e-01   p_joint 1.493000e-01

Joint ci ratio: 8.140165e-02	ci left: 9.965488e-02	ci right 1.081607e-01	k: 2077	n:20000
Cons ci ratio: 4.591489e-02	ci left: 2.609277e-01	ci right 2.732401e-01	k: 5341	n:20000
KS ci ratio: 1.039761e-01	ci left: 6.289002e-02	ci right 6.983670e-02	k: 1326	n:20000
DSG2   20000 perm   4 sec   (4499 perm/sec)   p_kst 6.630000e-02   p_cons 2.670500e-01   p_joint 1.038500e-01

Joint ci ratio: 6.631039e-02	ci left: 1.008631e-01	ci right 1.078138e-01	k: 3129	n:30000
Cons ci ratio: 3.779180e-02	ci left: 2.589521e-01	ci right 2.689603e-01	k: 7918	n:30000
KS ci ratio: 8.511445e-02	ci left: 6.321594e-02	ci right 6.886846e-02	k: 1980	n:30000
DSG2   30000 perm   7 sec   (4339 perm/sec)   p_kst 6.600000e-02   p_cons 2.639333e-01   p_joint 1.043000e-01

Outputting figure to mutsig2_images.part000000000053/DSG2.5_3417_30000_0.066_0.26393_0.1043.png
                gene_name: DSG2
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 35 percent done.
DUSP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.557379e-02	ci left: 2.039253e-01	ci right 2.200428e-01	k: 2119	n:10000
Cons ci ratio: 1.824960e-01	ci left: 4.006355e-02	ci right 4.820470e-02	k: 440	n:10000
KS ci ratio: 1.606713e-02	ci left: 8.491691e-01	ci right 8.630228e-01	k: 8562	n:10000
DUSP10   10000 perm   2 sec   (5660 perm/sec)   p_kst 8.562000e-01   p_cons 4.400000e-02   p_joint 2.119000e-01

Joint ci ratio: 4.303636e-02	ci left: 2.868467e-01	ci right 2.995135e-01	k: 5863	n:20000
Cons ci ratio: 1.215897e-01	ci left: 4.638886e-02	ci right 5.244300e-02	k: 987	n:20000
KS ci ratio: 1.120311e-02	ci left: 8.547081e-01	ci right 8.643871e-01	k: 17192	n:20000
DUSP10   20000 perm   4 sec   (5032 perm/sec)   p_kst 8.596000e-01   p_cons 4.935000e-02   p_joint 2.931500e-01

Joint ci ratio: 4.120055e-02	ci left: 2.270013e-01	ci right 2.365840e-01	k: 6953	n:30000
Cons ci ratio: 9.984660e-02	ci left: 4.642167e-02	ci right 5.133284e-02	k: 1465	n:30000
KS ci ratio: 9.115477e-03	ci left: 8.564604e-01	ci right 8.643363e-01	k: 25813	n:30000
DUSP10   30000 perm   6 sec   (4801 perm/sec)   p_kst 8.604333e-01   p_cons 4.883333e-02   p_joint 2.317667e-01

Outputting figure to mutsig2_images.part000000000053/DUSP10.5_1461_30000_0.86043_0.048833_0.23177.png
                gene_name: DUSP10
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 37 percent done.
DUSP16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.383424e-02	ci left: 3.370699e-01	ci right 3.558196e-01	k: 3464	n:10000
Cons ci ratio: 4.779148e-02	ci left: 3.924695e-01	ci right 4.117875e-01	k: 4021	n:10000
KS ci ratio: 6.838763e-02	ci left: 2.387696e-01	ci right 2.557779e-01	k: 2472	n:10000
DUSP16   10000 perm   2 sec   (5491 perm/sec)   p_kst 2.472000e-01   p_cons 4.021000e-01   p_joint 3.464000e-01

Outputting figure to mutsig2_images.part000000000053/DUSP16.5_2022_10000_0.2472_0.4021_0.3464.png
                gene_name: DUSP16
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 39 percent done.
DUSP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.044270e-01	ci left: 1.170141e-01	ci right 1.300061e-01	k: 1234	n:10000
Cons ci ratio: 8.467069e-02	ci left: 1.689744e-01	ci right 1.840145e-01	k: 1764	n:10000
KS ci ratio: 8.713937e-02	ci left: 1.609163e-01	ci right 1.756775e-01	k: 1682	n:10000
DUSP6   10000 perm   2 sec   (5448 perm/sec)   p_kst 1.682000e-01   p_cons 1.764000e-01   p_joint 1.234000e-01

Joint ci ratio: 7.418545e-02	ci left: 1.179371e-01	ci right 1.270730e-01	k: 2449	n:20000
Cons ci ratio: 6.030820e-02	ci left: 1.691144e-01	ci right 1.796805e-01	k: 3487	n:20000
KS ci ratio: 6.225257e-02	ci left: 1.602747e-01	ci right 1.706228e-01	k: 3308	n:20000
DUSP6   20000 perm   4 sec   (4962 perm/sec)   p_kst 1.654000e-01   p_cons 1.743500e-01   p_joint 1.224500e-01

Outputting figure to mutsig2_images.part000000000053/DUSP6.5_1158_20000_0.1654_0.17435_0.12245.png
                gene_name: DUSP6
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 40 percent done.
DRAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.850473e-03	ci left: 9.752511e-01	ci right 9.810657e-01	k: 9783	n:10000
KS ci ratio: 3.465822e-02	ci left: 5.514072e-01	ci right 5.709571e-01	k: 5612	n:10000
DRAM2   10000 perm   2 sec   (5599 perm/sec)   p_kst 5.612000e-01   p_cons 9.783000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DRAM2.4_829_10000_0.5612_0.9783_1.png
                gene_name: DRAM2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
DSC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.420315e-02	ci left: 5.579219e-01	ci right 5.774387e-01	k: 5677	n:10000
Cons ci ratio: 9.600000e-02	ci left: 1.359974e-01	ci right 1.498113e-01	k: 1428	n:10000
KS ci ratio: 3.245844e-02	ci left: 5.834959e-01	ci right 6.028498e-01	k: 5932	n:10000
DSC3   10000 perm   2 sec   (5436 perm/sec)   p_kst 5.932000e-01   p_cons 1.428000e-01   p_joint 5.677000e-01

Outputting figure to mutsig2_images.part000000000053/DSC3.4_2786_10000_0.5932_0.1428_0.5677.png
                gene_name: DSC3
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 44 percent done.
DSTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.573248e-02	ci left: 2.032352e-01	ci right 2.193333e-01	k: 2112	n:10000
Cons ci ratio: 3.217680e-02	ci left: 5.877107e-01	ci right 6.070326e-01	k: 5974	n:10000
KS ci ratio: 8.636922e-02	ci left: 1.633724e-01	ci right 1.782199e-01	k: 1707	n:10000
DSTN   10000 perm   2 sec   (6141 perm/sec)   p_kst 1.707000e-01   p_cons 5.974000e-01   p_joint 2.112000e-01

Outputting figure to mutsig2_images.part000000000053/DSTN.4_514_10000_0.1707_0.5974_0.2112.png
                gene_name: DSTN
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 46 percent done.
DTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.592497e-02	ci left: 4.116961e-01	ci right 4.311497e-01	k: 4214	n:10000
Cons ci ratio: 6.304674e-02	ci left: 2.699278e-01	ci right 2.876013e-01	k: 2787	n:10000
KS ci ratio: 3.383534e-02	ci left: 5.632351e-01	ci right 5.827224e-01	k: 5730	n:10000
DTL   10000 perm   2 sec   (5378 perm/sec)   p_kst 5.730000e-01   p_cons 2.787000e-01   p_joint 4.214000e-01

Outputting figure to mutsig2_images.part000000000053/DTL.4_2253_10000_0.573_0.2787_0.4214.png
                gene_name: DTL
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 47 percent done.
DTNA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.986605e-02	ci left: 4.816553e-01	ci right 5.013497e-01	k: 4915	n:10000
KS ci ratio: 2.872461e-02	ci left: 6.411625e-01	ci right 6.599498e-01	k: 6506	n:10000
DTNA   10000 perm   2 sec   (5579 perm/sec)   p_kst 6.506000e-01   p_cons 4.915000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DTNA.4_2406_10000_0.6506_0.4915_1.png
                gene_name: DTNA
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
DTWD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.056164e-03	ci left: 9.650977e-01	ci right 9.720258e-01	k: 9687	n:10000
KS ci ratio: 2.998038e-02	ci left: 6.213549e-01	ci right 6.403688e-01	k: 6309	n:10000
DTWD1   10000 perm   2 sec   (6418 perm/sec)   p_kst 6.309000e-01   p_cons 9.687000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DTWD1.4_931_10000_0.6309_0.9687_1.png
                gene_name: DTWD1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
DTX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
Cons ci ratio: 2.288572e-01	ci left: 2.523219e-02	ci right 3.184628e-02	k: 284	n:10000
KS ci ratio: 2.280349e-01	ci left: 2.542102e-02	ci right 3.205731e-02	k: 286	n:10000
DTX1   10000 perm   2 sec   (5577 perm/sec)   p_kst 2.860000e-02   p_cons 2.840000e-02   p_joint 8.800000e-03

Joint ci ratio: 3.413601e-01	ci left: 5.433506e-03	ci right 7.713515e-03	k: 130	n:20000
Cons ci ratio: 1.631610e-01	ci left: 2.575746e-02	ci right 3.038111e-02	k: 560	n:20000
KS ci ratio: 1.601038e-01	ci left: 2.676609e-02	ci right 3.147214e-02	k: 581	n:20000
DTX1   20000 perm   4 sec   (5022 perm/sec)   p_kst 2.905000e-02   p_cons 2.800000e-02   p_joint 6.500000e-03

Joint ci ratio: 1.954299e-01	ci left: 1.193916e-02	ci right 1.455637e-02	k: 396	n:30000
Cons ci ratio: 1.317389e-01	ci left: 2.677524e-02	ci right 3.058344e-02	k: 859	n:30000
KS ci ratio: 1.299606e-01	ci left: 2.751748e-02	ci right 3.137436e-02	k: 882	n:30000
DTX1   30000 perm   6 sec   (4803 perm/sec)   p_kst 2.940000e-02   p_cons 2.863333e-02   p_joint 1.320000e-02

Joint ci ratio: 2.135928e-01	ci left: 7.457918e-03	ci right 9.264548e-03	k: 333	n:40000
Cons ci ratio: 1.133121e-01	ci left: 2.740160e-02	ci right 3.071724e-02	k: 1161	n:40000
KS ci ratio: 1.123694e-01	ci left: 2.786356e-02	ci right 3.120520e-02	k: 1180	n:40000
DTX1   40000 perm   9 sec   (4659 perm/sec)   p_kst 2.950000e-02   p_cons 2.902500e-02   p_joint 8.325000e-03

Joint ci ratio: 2.115527e-01	ci left: 6.098414e-03	ci right 7.559726e-03	k: 340	n:50000
Cons ci ratio: 1.014757e-01	ci left: 2.750752e-02	ci right 3.046750e-02	k: 1448	n:50000
KS ci ratio: 1.014757e-01	ci left: 2.750752e-02	ci right 3.046750e-02	k: 1448	n:50000
DTX1   50000 perm   11 sec   (4553 perm/sec)   p_kst 2.896000e-02   p_cons 2.896000e-02   p_joint 6.800000e-03

Joint ci ratio: 1.368865e-01	ci left: 1.255965e-02	ci right 1.442118e-02	k: 808	n:60000
Cons ci ratio: 8.726916e-02	ci left: 3.111177e-02	ci right 3.396701e-02	k: 1951	n:60000
KS ci ratio: 9.243742e-02	ci left: 2.775324e-02	ci right 3.045923e-02	k: 1745	n:60000
DTX1   60000 perm   13 sec   (4455 perm/sec)   p_kst 2.908333e-02   p_cons 3.251667e-02   p_joint 1.346667e-02

Joint ci ratio: 1.430446e-01	ci left: 9.854552e-03	ci right 1.138642e-02	k: 742	n:70000
Cons ci ratio: 8.087520e-02	ci left: 3.115664e-02	ci right 3.379659e-02	k: 2272	n:70000
KS ci ratio: 8.521496e-02	ci left: 2.809105e-02	ci right 3.060531e-02	k: 2053	n:70000
DTX1   70000 perm   16 sec   (4368 perm/sec)   p_kst 2.932857e-02   p_cons 3.245714e-02   p_joint 1.060000e-02

Joint ci ratio: 1.372919e-01	ci left: 9.394529e-03	ci right 1.079134e-02	k: 806	n:80000
Cons ci ratio: 7.573802e-02	ci left: 3.117152e-02	ci right 3.363754e-02	k: 2591	n:80000
KS ci ratio: 8.021315e-02	ci left: 2.782352e-02	ci right 3.016080e-02	k: 2318	n:80000
DTX1   80000 perm   19 sec   (4287 perm/sec)   p_kst 2.897500e-02   p_cons 3.238750e-02   p_joint 1.007500e-02

Joint ci ratio: 1.589655e-01	ci left: 6.177421e-03	ci right 7.254743e-03	k: 603	n:90000
Cons ci ratio: 7.138124e-02	ci left: 3.126368e-02	ci right 3.358880e-02	k: 2917	n:90000
KS ci ratio: 7.551959e-02	ci left: 2.796787e-02	ci right 3.017374e-02	k: 2615	n:90000
DTX1   90000 perm   21 sec   (4212 perm/sec)   p_kst 2.905556e-02   p_cons 3.241111e-02   p_joint 6.700000e-03

Joint ci ratio: 1.550650e-01	ci left: 5.857423e-03	ci right 6.851536e-03	k: 634	n:100000
Cons ci ratio: 6.783966e-02	ci left: 3.121281e-02	ci right 3.341443e-02	k: 3230	n:100000
KS ci ratio: 7.123716e-02	ci left: 2.834202e-02	ci right 3.044539e-02	k: 2938	n:100000
DTX1   100000 perm   24 sec   (4115 perm/sec)   p_kst 2.938000e-02   p_cons 3.230000e-02   p_joint 6.340000e-03

Joint ci ratio: 1.008625e-01	ci left: 1.286179e-02	ci right 1.423676e-02	k: 1489	n:110000
Cons ci ratio: 6.460844e-02	ci left: 3.133461e-02	ci right 3.343559e-02	k: 3561	n:110000
KS ci ratio: 6.782372e-02	ci left: 2.847220e-02	ci right 3.047998e-02	k: 3241	n:110000
DTX1   110000 perm   27 sec   (4050 perm/sec)   p_kst 2.946364e-02   p_cons 3.237273e-02   p_joint 1.353636e-02

Joint ci ratio: 1.049139e-01	ci left: 1.089630e-02	ci right 1.211082e-02	k: 1379	n:120000
Cons ci ratio: 6.194707e-02	ci left: 3.129043e-02	ci right 3.329892e-02	k: 3874	n:120000
KS ci ratio: 6.498105e-02	ci left: 2.847606e-02	ci right 3.039677e-02	k: 3531	n:120000
DTX1   120000 perm   30 sec   (3942 perm/sec)   p_kst 2.942500e-02   p_cons 3.228333e-02   p_joint 1.149167e-02

Joint ci ratio: 1.070177e-01	ci left: 9.668391e-03	ci right 1.076901e-02	k: 1327	n:130000
Cons ci ratio: 5.956022e-02	ci left: 3.128489e-02	ci right 3.321297e-02	k: 4191	n:130000
KS ci ratio: 6.262881e-02	ci left: 2.833688e-02	ci right 3.017650e-02	k: 3802	n:130000
DTX1   130000 perm   33 sec   (3884 perm/sec)   p_kst 2.924615e-02   p_cons 3.223846e-02   p_joint 1.020769e-02

Joint ci ratio: 1.411542e-01	ci left: 5.091723e-03	ci right 5.871831e-03	k: 766	n:140000
Cons ci ratio: 5.736389e-02	ci left: 3.135185e-02	ci right 3.321044e-02	k: 4518	n:140000
KS ci ratio: 6.127015e-02	ci left: 2.753607e-02	ci right 2.928353e-02	k: 3976	n:140000
DTX1   140000 perm   37 sec   (3829 perm/sec)   p_kst 2.840000e-02   p_cons 3.227143e-02   p_joint 5.471429e-03

Joint ci ratio: 1.520181e-01	ci left: 4.077747e-03	ci right 4.754962e-03	k: 661	n:150000
Cons ci ratio: 5.549456e-02	ci left: 3.129921e-02	ci right 3.309227e-02	k: 4828	n:150000
KS ci ratio: 5.899392e-02	ci left: 2.774915e-02	ci right 2.944247e-02	k: 4288	n:150000
DTX1   150000 perm   40 sec   (3775 perm/sec)   p_kst 2.858667e-02   p_cons 3.218667e-02   p_joint 4.406667e-03

Joint ci ratio: 1.636097e-01	ci left: 3.282459e-03	ci right 3.873255e-03	k: 571	n:160000
Cons ci ratio: 5.371048e-02	ci left: 3.135271e-02	ci right 3.308929e-02	k: 5154	n:160000
KS ci ratio: 5.700486e-02	ci left: 2.788732e-02	ci right 2.952981e-02	k: 4592	n:160000
DTX1   160000 perm   43 sec   (3723 perm/sec)   p_kst 2.870000e-02   p_cons 3.221250e-02   p_joint 3.568750e-03

Joint ci ratio: 1.611031e-01	ci left: 3.190941e-03	ci right 3.755613e-03	k: 589	n:170000
Cons ci ratio: 5.215205e-02	ci left: 3.132523e-02	ci right 3.300842e-02	k: 5467	n:170000
KS ci ratio: 5.531488e-02	ci left: 2.789982e-02	ci right 2.949277e-02	k: 4877	n:170000
DTX1   170000 perm   46 sec   (3672 perm/sec)   p_kst 2.868824e-02   p_cons 3.215882e-02   p_joint 3.464706e-03

Joint ci ratio: 1.129722e-01	ci left: 6.268917e-03	ci right 7.024882e-03	k: 1195	n:180000
Cons ci ratio: 5.064044e-02	ci left: 3.140022e-02	ci right 3.303711e-02	k: 5798	n:180000
KS ci ratio: 5.384740e-02	ci left: 2.782933e-02	ci right 2.937479e-02	k: 5147	n:180000
DTX1   180000 perm   50 sec   (3623 perm/sec)   p_kst 2.859444e-02   p_cons 3.221111e-02   p_joint 6.638889e-03

Joint ci ratio: 1.156492e-01	ci left: 5.662786e-03	ci right 6.362941e-03	k: 1141	n:190000
Cons ci ratio: 4.928216e-02	ci left: 3.143155e-02	ci right 3.302487e-02	k: 6122	n:190000
KS ci ratio: 5.245595e-02	ci left: 2.780314e-02	ci right 2.930603e-02	k: 5424	n:190000
DTX1   190000 perm   53 sec   (3577 perm/sec)   p_kst 2.854737e-02   p_cons 3.222105e-02   p_joint 6.005263e-03

Joint ci ratio: 1.135847e-01	ci left: 5.583613e-03	ci right 6.260828e-03	k: 1183	n:200000
Cons ci ratio: 4.805074e-02	ci left: 3.143062e-02	ci right 3.298298e-02	k: 6440	n:200000
KS ci ratio: 5.111635e-02	ci left: 2.783434e-02	ci right 2.929936e-02	k: 5712	n:200000
DTX1   200000 perm   57 sec   (3530 perm/sec)   p_kst 2.856000e-02   p_cons 3.220000e-02   p_joint 5.915000e-03

Joint ci ratio: 1.162985e-01	ci left: 5.067897e-03	ci right 5.698255e-03	k: 1129	n:210000
Cons ci ratio: 4.692518e-02	ci left: 3.140669e-02	ci right 3.292055e-02	k: 6753	n:210000
KS ci ratio: 4.986157e-02	ci left: 2.787713e-02	ci right 2.930735e-02	k: 6003	n:210000
DTX1   210000 perm   60 sec   (3485 perm/sec)   p_kst 2.858571e-02   p_cons 3.215714e-02   p_joint 5.376190e-03

Joint ci ratio: 1.210325e-01	ci left: 4.458142e-03	ci right 5.036843e-03	k: 1043	n:220000
Cons ci ratio: 4.578822e-02	ci left: 3.150219e-02	ci right 3.298289e-02	k: 7092	n:220000
KS ci ratio: 4.872277e-02	ci left: 2.788499e-02	ci right 2.928201e-02	k: 6287	n:220000
DTX1   220000 perm   64 sec   (3440 perm/sec)   p_kst 2.857727e-02   p_cons 3.223636e-02   p_joint 4.740909e-03

Joint ci ratio: 1.222267e-01	ci left: 4.179962e-03	ci right 4.728294e-03	k: 1023	n:230000
Cons ci ratio: 4.477993e-02	ci left: 3.152098e-02	ci right 3.296910e-02	k: 7415	n:230000
KS ci ratio: 4.765487e-02	ci left: 2.789680e-02	ci right 2.926294e-02	k: 6572	n:230000
DTX1   230000 perm   68 sec   (3396 perm/sec)   p_kst 2.857391e-02   p_cons 3.223913e-02   p_joint 4.447826e-03

Joint ci ratio: 1.225994e-01	ci left: 3.981538e-03	ci right 4.505546e-03	k: 1017	n:240000
Cons ci ratio: 4.390289e-02	ci left: 3.144372e-02	ci right 3.285927e-02	k: 7715	n:240000
KS ci ratio: 4.667176e-02	ci left: 2.788734e-02	ci right 2.922408e-02	k: 6852	n:240000
DTX1   240000 perm   72 sec   (3352 perm/sec)   p_kst 2.855000e-02   p_cons 3.214583e-02   p_joint 4.237500e-03

Joint ci ratio: 9.990943e-02	ci left: 5.814118e-03	ci right 6.429416e-03	k: 1529	n:250000
Cons ci ratio: 4.301173e-02	ci left: 3.146394e-02	ci right 3.285094e-02	k: 8038	n:250000
KS ci ratio: 4.578674e-02	ci left: 2.783143e-02	ci right 2.913953e-02	k: 7120	n:250000
DTX1   250000 perm   75 sec   (3311 perm/sec)   p_kst 2.848000e-02   p_cons 3.215200e-02   p_joint 6.116000e-03

Outputting figure to mutsig2_images.part000000000053/DTX1.4_1899_250000_0.02848_0.032152_0.006116.png
                gene_name: DTX1
               theta_stop: 0.100 
                    nperm: 250000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.0061 
     ci_joint_bounds_left: 0.0058 
    ci_joint_bounds_right: 0.0064 

Current progress: 53 percent done.
DTX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.536729e-02	ci left: 5.413880e-01	ci right 5.609822e-01	k: 5512	n:10000
Cons ci ratio: 1.172054e-02	ci left: 9.124500e-01	ci right 9.233051e-01	k: 9180	n:10000
KS ci ratio: 5.008264e-02	ci left: 3.702737e-01	ci right 3.893963e-01	k: 3798	n:10000
DTX2   10000 perm   2 sec   (5805 perm/sec)   p_kst 3.798000e-01   p_cons 9.180000e-01   p_joint 5.512000e-01

Outputting figure to mutsig2_images.part000000000053/DTX2.4_1905_10000_0.3798_0.918_0.5512.png
                gene_name: DTX2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 54 percent done.
DUSP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.372648e-01	ci left: 7.020239e-02	ci right 8.064655e-02	k: 753	n:10000
Cons ci ratio: 1.187869e-01	ci left: 9.233774e-02	ci right 1.040975e-01	k: 981	n:10000
KS ci ratio: 1.685670e-01	ci left: 4.696137e-02	ci right 5.570235e-02	k: 512	n:10000
DUSP11   10000 perm   2 sec   (6307 perm/sec)   p_kst 5.120000e-02   p_cons 9.810000e-02   p_joint 7.530000e-02

Joint ci ratio: 9.302034e-02	ci left: 7.774418e-02	ci right 8.537799e-02	k: 1630	n:20000
Cons ci ratio: 8.630591e-02	ci left: 8.945046e-02	ci right 9.756816e-02	k: 1869	n:20000
KS ci ratio: 1.178121e-01	ci left: 4.935201e-02	ci right 5.557892e-02	k: 1048	n:20000
DUSP11   20000 perm   4 sec   (5129 perm/sec)   p_kst 5.240000e-02   p_cons 9.345000e-02   p_joint 8.150000e-02

Joint ci ratio: 8.276778e-02	ci left: 6.668016e-02	ci right 7.247020e-02	k: 2086	n:30000
Cons ci ratio: 6.758306e-02	ci left: 9.741531e-02	ci right 1.042622e-01	k: 3024	n:30000
KS ci ratio: 9.633932e-02	ci left: 4.977495e-02	ci right 5.484553e-02	k: 1568	n:30000
DUSP11   30000 perm   6 sec   (4970 perm/sec)   p_kst 5.226667e-02   p_cons 1.008000e-01   p_joint 6.953333e-02

Outputting figure to mutsig2_images.part000000000053/DUSP11.4_1170_30000_0.052267_0.1008_0.069533.png
                gene_name: DUSP11
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.072 

Current progress: 56 percent done.
DVL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.336175e-02	ci left: 2.679478e-01	ci right 2.855824e-01	k: 2767	n:10000
Cons ci ratio: 6.070122e-02	ci left: 2.852798e-01	ci right 3.032402e-01	k: 2942	n:10000
KS ci ratio: 7.906570e-02	ci left: 1.894406e-01	ci right 2.051361e-01	k: 1972	n:10000
DVL3   10000 perm   2 sec   (5804 perm/sec)   p_kst 1.972000e-01   p_cons 2.942000e-01   p_joint 2.767000e-01

Outputting figure to mutsig2_images.part000000000053/DVL3.4_2211_10000_0.1972_0.2942_0.2767.png
                gene_name: DVL3
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 58 percent done.
DRD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.920559e-02	ci left: 2.344220e-01	ci right 2.513280e-01	k: 2428	n:10000
Cons ci ratio: 1.999762e-01	ci left: 3.329057e-02	ci right 4.078224e-02	k: 369	n:10000
KS ci ratio: 3.651866e-02	ci left: 5.254655e-01	ci right 5.451139e-01	k: 5353	n:10000
DRD3   10000 perm   2 sec   (6284 perm/sec)   p_kst 5.353000e-01   p_cons 3.690000e-02   p_joint 2.428000e-01

Joint ci ratio: 3.936225e-02	ci left: 3.249260e-01	ci right 3.380231e-01	k: 6629	n:20000
Cons ci ratio: 1.392719e-01	ci left: 3.544087e-02	ci right 4.079449e-02	k: 761	n:20000
KS ci ratio: 2.505053e-02	ci left: 5.434739e-01	ci right 5.573115e-01	k: 11008	n:20000
DRD3   20000 perm   4 sec   (5592 perm/sec)   p_kst 5.504000e-01   p_cons 3.805000e-02   p_joint 3.314500e-01

Joint ci ratio: 3.217059e-02	ci left: 3.257082e-01	ci right 3.363912e-01	k: 9931	n:30000
Cons ci ratio: 1.122936e-01	ci left: 3.683738e-02	ci right 4.125246e-02	k: 1170	n:30000
KS ci ratio: 2.059224e-02	ci left: 5.414129e-01	ci right 5.527114e-01	k: 16412	n:30000
DRD3   30000 perm   6 sec   (5330 perm/sec)   p_kst 5.470667e-01   p_cons 3.900000e-02   p_joint 3.310333e-01

Joint ci ratio: 4.589015e-02	ci left: 1.507231e-01	ci right 1.578272e-01	k: 6170	n:40000
Cons ci ratio: 1.031831e-01	ci left: 3.302530e-02	ci right 3.664264e-02	k: 1392	n:40000
KS ci ratio: 1.772740e-02	ci left: 5.451337e-01	ci right 5.549090e-01	k: 22001	n:40000
DRD3   40000 perm   8 sec   (5158 perm/sec)   p_kst 5.500250e-01   p_cons 3.480000e-02   p_joint 1.542500e-01

Joint ci ratio: 3.738664e-02	ci left: 1.768595e-01	ci right 1.836176e-01	k: 9011	n:50000
Cons ci ratio: 9.221455e-02	ci left: 3.326929e-02	ci right 3.650500e-02	k: 1743	n:50000
KS ci ratio: 1.583500e-02	ci left: 5.463071e-01	ci right 5.550470e-01	k: 27534	n:50000
DRD3   50000 perm   10 sec   (5011 perm/sec)   p_kst 5.506800e-01   p_cons 3.486000e-02   p_joint 1.802200e-01

Outputting figure to mutsig2_images.part000000000053/DRD3.3_1227_50000_0.55068_0.03486_0.18022.png
                gene_name: DRD3
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.18 

Current progress: 60 percent done.
DSE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.202778e-02	ci left: 2.764632e-01	ci right 2.942620e-01	k: 2853	n:10000
Cons ci ratio: 2.371229e-02	ci left: 7.233032e-01	ci right 7.407614e-01	k: 7321	n:10000
KS ci ratio: 1.075815e-01	ci left: 1.108601e-01	ci right 1.235638e-01	k: 1171	n:10000
DSE   10000 perm   2 sec   (6050 perm/sec)   p_kst 1.171000e-01   p_cons 7.321000e-01   p_joint 2.853000e-01

Joint ci ratio: 5.048835e-02	ci left: 2.257183e-01	ci right 2.374598e-01	k: 4631	n:20000
Cons ci ratio: 1.680372e-02	ci left: 7.250478e-01	ci right 7.373849e-01	k: 14625	n:20000
KS ci ratio: 7.725382e-02	ci left: 1.096268e-01	ci right 1.184858e-01	k: 2280	n:20000
DSE   20000 perm   4 sec   (5351 perm/sec)   p_kst 1.140000e-01   p_cons 7.312500e-01   p_joint 2.315500e-01

Outputting figure to mutsig2_images.part000000000053/DSE.3_2897_20000_0.114_0.73125_0.23155.png
                gene_name: DSE
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 61 percent done.
DTWD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.408318e-01	ci left: 6.681548e-02	ci right 7.703558e-02	k: 718	n:10000
Cons ci ratio: 6.536699e-02	ci left: 2.557759e-01	ci right 2.731615e-01	k: 2644	n:10000
KS ci ratio: 2.619600e-01	ci left: 1.902780e-02	ci right 2.485533e-02	k: 218	n:10000
DTWD2   10000 perm   2 sec   (6493 perm/sec)   p_kst 2.180000e-02   p_cons 2.644000e-01   p_joint 7.180000e-02

Joint ci ratio: 8.278669e-02	ci left: 9.661171e-02	ci right 1.050047e-01	k: 2015	n:20000
Cons ci ratio: 4.623959e-02	ci left: 2.581983e-01	ci right 2.704703e-01	k: 5286	n:20000
KS ci ratio: 1.767584e-01	ci left: 2.187547e-02	ci right 2.616445e-02	k: 479	n:20000
DTWD2   20000 perm   3 sec   (5774 perm/sec)   p_kst 2.395000e-02   p_cons 2.643000e-01   p_joint 1.007500e-01

Joint ci ratio: 8.041137e-02	ci left: 7.044095e-02	ci right 7.637532e-02	k: 2201	n:30000
Cons ci ratio: 3.794803e-02	ci left: 2.573620e-01	ci right 2.673507e-01	k: 7870	n:30000
KS ci ratio: 1.451521e-01	ci left: 2.200829e-02	ci right 2.548478e-02	k: 711	n:30000
DTWD2   30000 perm   5 sec   (5494 perm/sec)   p_kst 2.370000e-02   p_cons 2.623333e-01   p_joint 7.336667e-02

Joint ci ratio: 9.232391e-02	ci left: 4.113056e-02	ci right 4.513611e-02	k: 1724	n:40000
Cons ci ratio: 3.424024e-02	ci left: 2.425560e-01	ci right 2.510308e-01	k: 9871	n:40000
KS ci ratio: 1.270373e-01	ci left: 2.177117e-02	ci right 2.474860e-02	k: 929	n:40000
DTWD2   40000 perm   8 sec   (5323 perm/sec)   p_kst 2.322500e-02   p_cons 2.467750e-01   p_joint 4.310000e-02

Joint ci ratio: 7.673784e-02	ci left: 4.769348e-02	ci right 5.151903e-02	k: 2479	n:50000
Cons ci ratio: 3.062213e-02	ci left: 2.430456e-01	ci right 2.506239e-01	k: 12341	n:50000
KS ci ratio: 1.145114e-01	ci left: 2.158717e-02	ci right 2.422862e-02	k: 1144	n:50000
DTWD2   50000 perm   10 sec   (5183 perm/sec)   p_kst 2.288000e-02   p_cons 2.468200e-01   p_joint 4.958000e-02

Joint ci ratio: 8.917576e-02	ci left: 2.980695e-02	ci right 3.260531e-02	k: 1871	n:60000
Cons ci ratio: 2.804509e-02	ci left: 2.421764e-01	ci right 2.490815e-01	k: 14737	n:60000
KS ci ratio: 1.059638e-01	ci left: 2.111710e-02	ci right 2.349609e-02	k: 1337	n:60000
DTWD2   60000 perm   12 sec   (5065 perm/sec)   p_kst 2.228333e-02   p_cons 2.456167e-01   p_joint 3.118333e-02

Joint ci ratio: 6.045633e-02	ci left: 5.494170e-02	ci right 5.838088e-02	k: 3965	n:70000
Cons ci ratio: 2.596905e-02	ci left: 2.423721e-01	ci right 2.487633e-01	k: 17189	n:70000
KS ci ratio: 9.862169e-02	ci left: 2.098184e-02	ci right 2.317231e-02	k: 1544	n:70000
DTWD2   70000 perm   14 sec   (4953 perm/sec)   p_kst 2.205714e-02   p_cons 2.455571e-01   p_joint 5.664286e-02

Outputting figure to mutsig2_images.part000000000053/DTWD2.3_921_70000_0.022057_0.24556_0.056643.png
                gene_name: DTWD2
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.058 

Current progress: 63 percent done.
DTX3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.698263e-02	ci left: 8.347018e-01	ci right 8.490984e-01	k: 8420	n:10000
Cons ci ratio: 2.530722e-02	ci left: 6.967598e-01	ci right 7.147202e-01	k: 7058	n:10000
KS ci ratio: 3.148575e-02	ci left: 5.981504e-01	ci right 6.173868e-01	k: 6078	n:10000
DTX3L   10000 perm   2 sec   (5895 perm/sec)   p_kst 6.078000e-01   p_cons 7.058000e-01   p_joint 8.420000e-01

Outputting figure to mutsig2_images.part000000000053/DTX3L.3_2243_10000_0.6078_0.7058_0.842.png
                gene_name: DTX3L
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 65 percent done.
DTX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.090017e-02	ci left: 1.496259e-01	ci right 1.639746e-01	k: 1567	n:10000
Cons ci ratio: 8.098835e-02	ci left: 1.820569e-01	ci right 1.975242e-01	k: 1897	n:10000
KS ci ratio: 8.197598e-02	ci left: 1.784159e-01	ci right 1.937674e-01	k: 1860	n:10000
DTX4   10000 perm   2 sec   (5761 perm/sec)   p_kst 1.860000e-01   p_cons 1.897000e-01   p_joint 1.567000e-01

Outputting figure to mutsig2_images.part000000000053/DTX4.3_1896_10000_0.186_0.1897_0.1567.png
                gene_name: DTX4
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 67 percent done.
DUSP19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.998711e-02	ci left: 3.711691e-01	ci right 3.903004e-01	k: 3807	n:10000
Cons ci ratio: 2.121254e-02	ci left: 7.651672e-01	ci right 7.816732e-01	k: 7735	n:10000
KS ci ratio: 6.356810e-02	ci left: 2.666610e-01	ci right 2.842700e-01	k: 2754	n:10000
DUSP19   10000 perm   2 sec   (6416 perm/sec)   p_kst 2.754000e-01   p_cons 7.735000e-01   p_joint 3.807000e-01

Outputting figure to mutsig2_images.part000000000053/DUSP19.3_670_10000_0.2754_0.7735_0.3807.png
                gene_name: DUSP19
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 68 percent done.
DUSP22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.583028e-02	ci left: 3.208839e-01	ci right 3.394152e-01	k: 3301	n:10000
Cons ci ratio: 1.023572e-01	ci left: 1.213154e-01	ci right 1.345022e-01	k: 1278	n:10000
KS ci ratio: 5.201841e-02	ci left: 3.526716e-01	ci right 3.716088e-01	k: 3621	n:10000
DUSP22   10000 perm   2 sec   (6398 perm/sec)   p_kst 3.621000e-01   p_cons 1.278000e-01   p_joint 3.301000e-01

Joint ci ratio: 4.140201e-02	ci left: 3.030465e-01	ci right 3.159089e-01	k: 6189	n:20000
Cons ci ratio: 7.301841e-02	ci left: 1.213321e-01	ci right 1.305770e-01	k: 2518	n:20000
KS ci ratio: 3.670694e-02	ci left: 3.564306e-01	ci right 3.698092e-01	k: 7262	n:20000
DUSP22   20000 perm   3 sec   (5798 perm/sec)   p_kst 3.631000e-01   p_cons 1.259000e-01   p_joint 3.094500e-01

Outputting figure to mutsig2_images.part000000000053/DUSP22.3_587_20000_0.3631_0.1259_0.30945.png
                gene_name: DUSP22
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 70 percent done.
DYDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.202967e-02	ci left: 3.525721e-01	ci right 3.715083e-01	k: 3620	n:10000
Cons ci ratio: 4.132077e-02	ci left: 4.637727e-01	ci right 4.834426e-01	k: 4736	n:10000
KS ci ratio: 4.918069e-02	ci left: 3.788311e-01	ci right 3.980340e-01	k: 3884	n:10000
DYDC1   10000 perm   1 sec   (6722 perm/sec)   p_kst 3.884000e-01   p_cons 4.736000e-01   p_joint 3.620000e-01

Outputting figure to mutsig2_images.part000000000053/DYDC1.3_558_10000_0.3884_0.4736_0.362.png
                gene_name: DYDC1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 72 percent done.
DYM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.438996e-02	ci left: 7.119950e-01	ci right 7.296762e-01	k: 7209	n:10000
Cons ci ratio: 6.219546e-02	ci left: 2.753738e-01	ci right 2.931520e-01	k: 2842	n:10000
KS ci ratio: 5.320867e-03	ci left: 9.791993e-01	ci right 9.845147e-01	k: 9820	n:10000
DYM   10000 perm   2 sec   (5770 perm/sec)   p_kst 9.820000e-01   p_cons 2.842000e-01   p_joint 7.209000e-01

Outputting figure to mutsig2_images.part000000000053/DYM.3_2074_10000_0.982_0.2842_0.7209.png
                gene_name: DYM
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 74 percent done.
DRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.731880e-02	ci left: 5.146560e-01	ci right 5.343297e-01	k: 5245	n:10000
Cons ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
KS ci ratio: 4.299881e-02	ci left: 4.440068e-01	ci right 4.636202e-01	k: 4538	n:10000
DRG1   10000 perm   1 sec   (6706 perm/sec)   p_kst 4.538000e-01   p_cons 7.820000e-02   p_joint 5.245000e-01

Joint ci ratio: 2.872707e-02	ci left: 4.751529e-01	ci right 4.890523e-01	k: 9642	n:20000
Cons ci ratio: 9.460828e-02	ci left: 7.529807e-02	ci right 8.282484e-02	k: 1580	n:20000
KS ci ratio: 3.022397e-02	ci left: 4.498781e-01	ci right 4.637345e-01	k: 9136	n:20000
DRG1   20000 perm   3 sec   (5870 perm/sec)   p_kst 4.568000e-01   p_cons 7.900000e-02   p_joint 4.821000e-01

Outputting figure to mutsig2_images.part000000000053/DRG1.2_1140_20000_0.4568_0.079_0.4821.png
                gene_name: DRG1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 75 percent done.
DRGX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.574622e-02	ci left: 8.541665e-01	ci right 8.678225e-01	k: 8611	n:10000
Cons ci ratio: 4.992358e-02	ci left: 3.717661e-01	ci right 3.909031e-01	k: 3813	n:10000
KS ci ratio: 2.353708e-02	ci left: 7.262324e-01	ci right 7.436305e-01	k: 7350	n:10000
DRGX   10000 perm   1 sec   (6935 perm/sec)   p_kst 7.350000e-01   p_cons 3.813000e-01   p_joint 8.611000e-01

Outputting figure to mutsig2_images.part000000000053/DRGX.2_831_10000_0.735_0.3813_0.8611.png
                gene_name: DRGX
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 77 percent done.
DSC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.980258e-02	ci left: 7.886762e-01	ci right 8.045507e-01	k: 7967	n:10000
KS ci ratio: 5.420475e-02	ci left: 3.339906e-01	ci right 3.527007e-01	k: 3433	n:10000
DSC2   10000 perm   2 sec   (5259 perm/sec)   p_kst 3.433000e-01   p_cons 7.967000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DSC2.2_2810_10000_0.3433_0.7967_1.png
                gene_name: DSC2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
DSCR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.504455e-02	ci left: 3.271384e-01	ci right 3.457570e-01	k: 3364	n:10000
Cons ci ratio: 8.429399e-02	ci left: 1.702525e-01	ci right 1.853357e-01	k: 1777	n:10000
KS ci ratio: 5.095471e-02	ci left: 3.622168e-01	ci right 3.812580e-01	k: 3717	n:10000
DSCR3   10000 perm   2 sec   (6212 perm/sec)   p_kst 3.717000e-01   p_cons 1.777000e-01   p_joint 3.364000e-01

Outputting figure to mutsig2_images.part000000000053/DSCR3.2_926_10000_0.3717_0.1777_0.3364.png
                gene_name: DSCR3
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 81 percent done.
DSTYK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.939167e-02	ci left: 1.881605e-01	ci right 2.038170e-01	k: 1959	n:10000
Cons ci ratio: 2.702786e-01	ci left: 1.781300e-02	ci right 2.347108e-02	k: 205	n:10000
KS ci ratio: 1.558138e-02	ci left: 8.567172e-01	ci right 8.702703e-01	k: 8636	n:10000
DSTYK   10000 perm   2 sec   (5519 perm/sec)   p_kst 8.636000e-01   p_cons 2.050000e-02   p_joint 1.959000e-01

Joint ci ratio: 5.664281e-02	ci left: 1.876988e-01	ci right 1.986906e-01	k: 3863	n:20000
Cons ci ratio: 1.861088e-01	ci left: 1.967775e-02	ci right 2.376295e-02	k: 433	n:20000
KS ci ratio: 1.108218e-02	ci left: 8.573453e-01	ci right 8.669492e-01	k: 17244	n:20000
DSTYK   20000 perm   4 sec   (5004 perm/sec)   p_kst 8.622000e-01   p_cons 2.165000e-02   p_joint 1.931500e-01

Joint ci ratio: 1.284692e-01	ci left: 2.816320e-02	ci right 3.206184e-02	k: 902	n:30000
Cons ci ratio: 1.493980e-01	ci left: 2.075518e-02	ci right 2.413818e-02	k: 672	n:30000
KS ci ratio: 9.066089e-03	ci left: 8.577756e-01	ci right 8.656208e-01	k: 25852	n:30000
DSTYK   30000 perm   6 sec   (4854 perm/sec)   p_kst 8.617333e-01   p_cons 2.240000e-02   p_joint 3.006667e-02

Joint ci ratio: 1.114012e-01	ci left: 2.834996e-02	ci right 3.171872e-02	k: 1200	n:40000
Cons ci ratio: 1.291868e-01	ci left: 2.104469e-02	ci right 2.397520e-02	k: 899	n:40000
KS ci ratio: 7.863986e-03	ci left: 8.579246e-01	ci right 8.647228e-01	k: 34454	n:40000
DSTYK   40000 perm   8 sec   (4740 perm/sec)   p_kst 8.613500e-01   p_cons 2.247500e-02   p_joint 3.000000e-02

Joint ci ratio: 9.920698e-02	ci left: 2.877582e-02	ci right 3.179904e-02	k: 1513	n:50000
Cons ci ratio: 1.147681e-01	ci left: 2.148998e-02	ci right 2.412583e-02	k: 1139	n:50000
KS ci ratio: 7.025168e-03	ci left: 8.585826e-01	ci right 8.646554e-01	k: 43082	n:50000
DSTYK   50000 perm   11 sec   (4643 perm/sec)   p_kst 8.616400e-01   p_cons 2.278000e-02   p_joint 3.026000e-02

Joint ci ratio: 9.086807e-02	ci left: 2.871467e-02	ci right 3.146436e-02	k: 1804	n:60000
Cons ci ratio: 1.051230e-01	ci left: 2.145805e-02	ci right 2.385509e-02	k: 1358	n:60000
KS ci ratio: 6.389443e-03	ci left: 8.597354e-01	ci right 8.652628e-01	k: 51751	n:60000
DSTYK   60000 perm   13 sec   (4556 perm/sec)   p_kst 8.625167e-01   p_cons 2.263333e-02   p_joint 3.006667e-02

Joint ci ratio: 8.301307e-02	ci left: 2.958841e-02	ci right 3.216496e-02	k: 2160	n:70000
Cons ci ratio: 9.641137e-02	ci left: 2.195798e-02	ci right 2.419608e-02	k: 1614	n:70000
KS ci ratio: 5.907671e-03	ci left: 8.602578e-01	ci right 8.653692e-01	k: 60398	n:70000
DSTYK   70000 perm   16 sec   (4471 perm/sec)   p_kst 8.628286e-01   p_cons 2.305714e-02   p_joint 3.085714e-02

Outputting figure to mutsig2_images.part000000000053/DSTYK.2_2842_70000_0.86283_0.023057_0.030857.png
                gene_name: DSTYK
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 82 percent done.
DTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.818335e-02	ci left: 3.030243e-01	ci right 3.212853e-01	k: 3121	n:10000
KS ci ratio: 4.304220e-02	ci left: 4.435078e-01	ci right 4.631194e-01	k: 4533	n:10000
DTD1   10000 perm   1 sec   (6803 perm/sec)   p_kst 4.533000e-01   p_cons 3.121000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DTD1.2_650_10000_0.4533_0.3121_1.png
                gene_name: DTD1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
DUOXA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.236629e-02	ci left: 7.458401e-01	ci right 7.628115e-01	k: 7544	n:10000
Cons ci ratio: 3.516050e-02	ci left: 5.442931e-01	ci right 5.638753e-01	k: 5541	n:10000
KS ci ratio: 5.815626e-02	ci left: 3.032226e-01	ci right 3.214868e-01	k: 3123	n:10000
DUOXA1   10000 perm   2 sec   (5957 perm/sec)   p_kst 3.123000e-01   p_cons 5.541000e-01   p_joint 7.544000e-01

Outputting figure to mutsig2_images.part000000000053/DUOXA1.2_1484_10000_0.3123_0.5541_0.7544.png
                gene_name: DUOXA1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 86 percent done.
DUOXA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.422738e-02	ci left: 2.626030e-01	ci right 2.801304e-01	k: 2713	n:10000
Cons ci ratio: 7.078431e-02	ci left: 2.263229e-01	ci right 2.430319e-01	k: 2346	n:10000
KS ci ratio: 4.308563e-02	ci left: 4.430089e-01	ci right 4.626186e-01	k: 4528	n:10000
DUOXA2   10000 perm   1 sec   (6756 perm/sec)   p_kst 4.528000e-01   p_cons 2.346000e-01   p_joint 2.713000e-01

Outputting figure to mutsig2_images.part000000000053/DUOXA2.2_987_10000_0.4528_0.2346_0.2713.png
                gene_name: DUOXA2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 88 percent done.
DUS4L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.372829e-02	ci left: 8.845229e-01	ci right 8.968485e-01	k: 8908	n:10000
KS ci ratio: 9.615707e-02	ci left: 1.356056e-01	ci right 1.494034e-01	k: 1424	n:10000
DUS4L   10000 perm   1 sec   (6862 perm/sec)   p_kst 1.424000e-01   p_cons 8.908000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DUS4L.2_978_10000_0.1424_0.8908_1.png
                gene_name: DUS4L
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
DUSP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.352500e-02	ci left: 7.264344e-01	ci right 7.438284e-01	k: 7352	n:10000
Cons ci ratio: 1.372124e-02	ci left: 8.846253e-01	ci right 8.969460e-01	k: 8909	n:10000
KS ci ratio: 5.607094e-02	ci left: 3.189980e-01	ci right 3.375022e-01	k: 3282	n:10000
DUSP1   10000 perm   1 sec   (6669 perm/sec)   p_kst 3.282000e-01   p_cons 8.909000e-01   p_joint 7.352000e-01

Outputting figure to mutsig2_images.part000000000053/DUSP1.2_1120_10000_0.3282_0.8909_0.7352.png
                gene_name: DUSP1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 91 percent done.
DUSP13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.081627e-02	ci left: 6.083937e-01	ci right 6.275375e-01	k: 6180	n:10000
KS ci ratio: 5.465244e-02	ci left: 3.303159e-01	ci right 3.489775e-01	k: 3396	n:10000
DUSP13   10000 perm   2 sec   (6563 perm/sec)   p_kst 3.396000e-01   p_cons 6.180000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DUSP13.2_1475_10000_0.3396_0.618_1.png
                gene_name: DUSP13
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
DUSP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.831816e-01	ci left: 1.613586e-02	ci right 2.154960e-02	k: 187	n:10000
Cons ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
KS ci ratio: 6.509927e-02	ci left: 2.573588e-01	ci right 2.747777e-01	k: 2660	n:10000
DUSP5   10000 perm   2 sec   (6522 perm/sec)   p_kst 2.660000e-01   p_cons 7.700000e-03   p_joint 1.870000e-02

Joint ci ratio: 2.569803e-01	ci left: 1.002189e-02	ci right 1.302265e-02	k: 229	n:20000
Cons ci ratio: 3.413601e-01	ci left: 5.433506e-03	ci right 7.713515e-03	k: 130	n:20000
KS ci ratio: 4.599124e-02	ci left: 2.602826e-01	ci right 2.725854e-01	k: 5328	n:20000
DUSP5   20000 perm   3 sec   (5762 perm/sec)   p_kst 2.664000e-01   p_cons 6.500000e-03   p_joint 1.145000e-02

Joint ci ratio: 1.892454e-01	ci left: 1.276459e-02	ci right 1.546404e-02	k: 422	n:30000
Cons ci ratio: 2.755631e-01	ci left: 5.777180e-03	ci right 7.653601e-03	k: 200	n:30000
KS ci ratio: 3.748305e-02	ci left: 2.621326e-01	ci right 2.721792e-01	k: 8014	n:30000
DUSP5   30000 perm   5 sec   (5485 perm/sec)   p_kst 2.671333e-01   p_cons 6.666667e-03   p_joint 1.406667e-02

Joint ci ratio: 1.785985e-01	ci left: 1.083650e-02	ci right 1.298523e-02	k: 475	n:40000
Cons ci ratio: 2.386457e-01	ci left: 5.900505e-03	ci right 7.522355e-03	k: 267	n:40000
KS ci ratio: 3.257708e-02	ci left: 2.614257e-01	ci right 2.701083e-01	k: 10630	n:40000
DUSP5   40000 perm   8 sec   (5269 perm/sec)   p_kst 2.657500e-01   p_cons 6.675000e-03   p_joint 1.187500e-02

Joint ci ratio: 1.623882e-01	ci left: 1.058390e-02	ci right 1.247345e-02	k: 575	n:50000
Cons ci ratio: 2.147462e-01	ci left: 5.909029e-03	ci right 7.349151e-03	k: 330	n:50000
KS ci ratio: 2.903331e-02	ci left: 2.632852e-01	ci right 2.710619e-01	k: 13358	n:50000
DUSP5   50000 perm   10 sec   (5117 perm/sec)   p_kst 2.671600e-01   p_cons 6.600000e-03   p_joint 1.150000e-02

Joint ci ratio: 1.604498e-01	ci left: 9.059234e-03	ci right 1.065538e-02	k: 590	n:60000
Cons ci ratio: 1.975943e-01	ci left: 5.872626e-03	ci right 7.175797e-03	k: 390	n:60000
KS ci ratio: 2.656677e-02	ci left: 2.626998e-01	ci right 2.697895e-01	k: 15974	n:60000
DUSP5   60000 perm   12 sec   (4978 perm/sec)   p_kst 2.662333e-01   p_cons 6.500000e-03   p_joint 9.833333e-03

Joint ci ratio: 1.450305e-01	ci left: 9.579037e-03	ci right 1.109054e-02	k: 722	n:70000
Cons ci ratio: 1.781202e-01	ci left: 6.259181e-03	ci right 7.496512e-03	k: 480	n:70000
KS ci ratio: 2.458662e-02	ci left: 2.631135e-01	ci right 2.696773e-01	k: 18647	n:70000
DUSP5   70000 perm   15 sec   (4813 perm/sec)   p_kst 2.663857e-01   p_cons 6.857143e-03   p_joint 1.031429e-02

Joint ci ratio: 1.386875e-01	ci left: 9.201371e-03	ci right 1.058452e-02	k: 790	n:80000
Cons ci ratio: 1.662686e-01	ci left: 6.326087e-03	ci right 7.485106e-03	k: 551	n:80000
KS ci ratio: 2.295390e-02	ci left: 2.640861e-01	ci right 2.702308e-01	k: 21372	n:80000
DUSP5   80000 perm   18 sec   (4492 perm/sec)   p_kst 2.671500e-01   p_cons 6.887500e-03   p_joint 9.875000e-03

Joint ci ratio: 1.299381e-01	ci left: 9.360229e-03	ci right 1.067164e-02	k: 900	n:90000
Cons ci ratio: 1.542775e-01	ci left: 6.572523e-03	ci right 7.681824e-03	k: 640	n:90000
KS ci ratio: 2.161638e-02	ci left: 2.647097e-01	ci right 2.705053e-01	k: 24084	n:90000
DUSP5   90000 perm   21 sec   (4225 perm/sec)   p_kst 2.676000e-01   p_cons 7.111111e-03   p_joint 1.000000e-02

Joint ci ratio: 1.230290e-01	ci left: 9.431335e-03	ci right 1.067733e-02	k: 1004	n:100000
Cons ci ratio: 1.458686e-01	ci left: 6.646765e-03	ci right 7.702123e-03	k: 716	n:100000
KS ci ratio: 2.051187e-02	ci left: 2.647682e-01	ci right 2.702653e-01	k: 26751	n:100000
DUSP5   100000 perm   24 sec   (4112 perm/sec)   p_kst 2.675100e-01   p_cons 7.160000e-03   p_joint 1.004000e-02

Joint ci ratio: 1.159601e-01	ci left: 9.685250e-03	ci right 1.088624e-02	k: 1130	n:110000
Cons ci ratio: 1.390537e-01	ci left: 6.673743e-03	ci right 7.679776e-03	k: 788	n:110000
KS ci ratio: 1.956284e-02	ci left: 2.647860e-01	ci right 2.700262e-01	k: 29414	n:110000
DUSP5   110000 perm   27 sec   (4041 perm/sec)   p_kst 2.674000e-01   p_cons 7.163636e-03   p_joint 1.027273e-02

Joint ci ratio: 1.077955e-01	ci left: 1.031209e-02	ci right 1.149506e-02	k: 1307	n:120000
Cons ci ratio: 1.342160e-01	ci left: 6.584391e-03	ci right 7.539665e-03	k: 846	n:120000
KS ci ratio: 1.871689e-02	ci left: 2.651714e-01	ci right 2.701898e-01	k: 32121	n:120000
DUSP5   120000 perm   30 sec   (4014 perm/sec)   p_kst 2.676750e-01   p_cons 7.050000e-03   p_joint 1.089167e-02

Joint ci ratio: 1.024754e-01	ci left: 1.056004e-02	ci right 1.170807e-02	k: 1446	n:130000
Cons ci ratio: 1.285690e-01	ci left: 6.643316e-03	ci right 7.563492e-03	k: 922	n:130000
KS ci ratio: 1.798679e-02	ci left: 2.651795e-01	ci right 2.700001e-01	k: 34786	n:130000
DUSP5   130000 perm   33 sec   (3959 perm/sec)   p_kst 2.675846e-01   p_cons 7.092308e-03   p_joint 1.112308e-02

Joint ci ratio: 9.793459e-02	ci left: 1.075986e-02	ci right 1.187480e-02	k: 1583	n:140000
Cons ci ratio: 1.232693e-01	ci left: 6.729162e-03	ci right 7.620004e-03	k: 1003	n:140000
KS ci ratio: 1.732743e-02	ci left: 2.653820e-01	ci right 2.700276e-01	k: 37478	n:140000
DUSP5   140000 perm   36 sec   (3858 perm/sec)   p_kst 2.677000e-01   p_cons 7.164286e-03   p_joint 1.130714e-02

Joint ci ratio: 9.077302e-02	ci left: 1.172225e-02	ci right 1.284338e-02	k: 1841	n:150000
Cons ci ratio: 1.191851e-01	ci left: 6.733069e-03	ci right 7.592813e-03	k: 1073	n:150000
KS ci ratio: 1.675272e-02	ci left: 2.651613e-01	ci right 2.696477e-01	k: 40110	n:150000
DUSP5   150000 perm   40 sec   (3771 perm/sec)   p_kst 2.674000e-01   p_cons 7.153333e-03   p_joint 1.227333e-02

Joint ci ratio: 9.226340e-02	ci left: 1.064124e-02	ci right 1.167659e-02	k: 1784	n:160000
Cons ci ratio: 1.157368e-01	ci left: 6.706561e-03	ci right 7.536450e-03	k: 1138	n:160000
KS ci ratio: 1.622854e-02	ci left: 2.650454e-01	ci right 2.693881e-01	k: 42754	n:160000
DUSP5   160000 perm   43 sec   (3733 perm/sec)   p_kst 2.672125e-01   p_cons 7.112500e-03   p_joint 1.115000e-02

Joint ci ratio: 8.168814e-02	ci left: 1.281845e-02	ci right 1.391588e-02	k: 2271	n:170000
Cons ci ratio: 1.122900e-01	ci left: 6.717797e-03	ci right 7.522679e-03	k: 1209	n:170000
KS ci ratio: 1.575090e-02	ci left: 2.649392e-01	ci right 2.691511e-01	k: 45397	n:170000
DUSP5   170000 perm   46 sec   (3703 perm/sec)   p_kst 2.670412e-01   p_cons 7.111765e-03   p_joint 1.335882e-02

Joint ci ratio: 7.885093e-02	ci left: 1.301008e-02	ci right 1.408345e-02	k: 2437	n:180000
Cons ci ratio: 1.083276e-01	ci left: 6.830814e-03	ci right 7.618515e-03	k: 1299	n:180000
KS ci ratio: 1.530897e-02	ci left: 2.649517e-01	ci right 2.690447e-01	k: 48059	n:180000
DUSP5   180000 perm   49 sec   (3674 perm/sec)   p_kst 2.669944e-01   p_cons 7.216667e-03   p_joint 1.353889e-02

Joint ci ratio: 7.664896e-02	ci left: 1.305819e-02	ci right 1.410410e-02	k: 2579	n:190000
Cons ci ratio: 1.051771e-01	ci left: 6.875994e-03	ci right 7.644418e-03	k: 1378	n:190000
KS ci ratio: 1.490025e-02	ci left: 2.650170e-01	ci right 2.690007e-01	k: 50731	n:190000
DUSP5   190000 perm   52 sec   (3642 perm/sec)   p_kst 2.670053e-01   p_cons 7.252632e-03   p_joint 1.357368e-02

Joint ci ratio: 7.483103e-02	ci left: 1.302824e-02	ci right 1.404593e-02	k: 2706	n:200000
Cons ci ratio: 1.021804e-01	ci left: 6.931574e-03	ci right 7.682813e-03	k: 1460	n:200000
KS ci ratio: 1.453079e-02	ci left: 2.648575e-01	ci right 2.687392e-01	k: 53359	n:200000
DUSP5   200000 perm   55 sec   (3610 perm/sec)   p_kst 2.667950e-01   p_cons 7.300000e-03   p_joint 1.353000e-02

Joint ci ratio: 7.267014e-02	ci left: 1.316976e-02	ci right 1.416754e-02	k: 2869	n:210000
Cons ci ratio: 9.923199e-02	ci left: 7.010006e-03	ci right 7.746547e-03	k: 1548	n:210000
KS ci ratio: 1.418060e-02	ci left: 2.649044e-01	ci right 2.686925e-01	k: 56027	n:210000
DUSP5   210000 perm   59 sec   (3578 perm/sec)   p_kst 2.667952e-01   p_cons 7.371429e-03   p_joint 1.366190e-02

Outputting figure to mutsig2_images.part000000000053/DUSP5.2_1171_210000_0.2668_0.0073714_0.013662.png
                gene_name: DUSP5
               theta_stop: 0.099 
                    nperm: 210000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.0074 
      ci_cons_bounds_left: 0.0070 
     ci_cons_bounds_right: 0.0077 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 95 percent done.
DUSP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.201623e-02	ci left: 1.464866e-01	ci right 1.607158e-01	k: 1535	n:10000
Cons ci ratio: 3.303999e-02	ci left: 5.748680e-01	ci right 5.942827e-01	k: 5846	n:10000
KS ci ratio: 1.801579e-01	ci left: 4.111563e-02	ci right 4.935192e-02	k: 451	n:10000
DUSP7   10000 perm   2 sec   (6419 perm/sec)   p_kst 4.510000e-02   p_cons 5.846000e-01   p_joint 1.535000e-01

Joint ci ratio: 3.839659e-02	ci left: 3.359713e-01	ci right 3.491745e-01	k: 6851	n:20000
Cons ci ratio: 2.351116e-02	ci left: 5.746768e-01	ci right 5.883995e-01	k: 11631	n:20000
KS ci ratio: 1.288943e-01	ci left: 4.134441e-02	ci right 4.708905e-02	k: 883	n:20000
DUSP7   20000 perm   4 sec   (5662 perm/sec)   p_kst 4.415000e-02   p_cons 5.815500e-01   p_joint 3.425500e-01

Joint ci ratio: 5.123489e-02	ci left: 1.590673e-01	ci right 1.674647e-01	k: 4897	n:30000
Cons ci ratio: 1.922412e-02	ci left: 5.752590e-01	ci right 5.864587e-01	k: 17426	n:30000
KS ci ratio: 1.041381e-01	ci left: 4.274667e-02	ci right 4.747526e-02	k: 1352	n:30000
DUSP7   30000 perm   6 sec   (5368 perm/sec)   p_kst 4.506667e-02   p_cons 5.808667e-01   p_joint 1.632333e-01

Joint ci ratio: 3.295054e-02	ci left: 2.570243e-01	ci right 2.656603e-01	k: 10453	n:40000
Cons ci ratio: 1.666641e-02	ci left: 5.754956e-01	ci right 5.851927e-01	k: 23214	n:40000
KS ci ratio: 8.995183e-02	ci left: 4.328259e-02	ci right 4.738375e-02	k: 1812	n:40000
DUSP7   40000 perm   8 sec   (5199 perm/sec)   p_kst 4.530000e-02   p_cons 5.803500e-01   p_joint 2.613250e-01

Outputting figure to mutsig2_images.part000000000053/DUSP7.2_1272_40000_0.0453_0.58035_0.26132.png
                gene_name: DUSP7
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 96 percent done.
DUXA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.789526e-02	ci left: 2.414380e-01	ci right 2.585078e-01	k: 2499	n:10000
Cons ci ratio: 5.742002e-02	ci left: 3.086781e-01	ci right 3.270281e-01	k: 3178	n:10000
KS ci ratio: 2.617518e-02	ci left: 6.824434e-01	ci right 7.006449e-01	k: 6916	n:10000
DUXA   10000 perm   1 sec   (6809 perm/sec)   p_kst 6.916000e-01   p_cons 3.178000e-01   p_joint 2.499000e-01

Outputting figure to mutsig2_images.part000000000053/DUXA.2_639_10000_0.6916_0.3178_0.2499.png
                gene_name: DUXA
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 98 percent done.
DYDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.483278e-02	ci left: 7.046281e-01	ci right 7.224473e-01	k: 7136	n:10000
KS ci ratio: 4.943000e-02	ci left: 3.764427e-01	ci right 3.956238e-01	k: 3860	n:10000
DYDC2   10000 perm   1 sec   (6943 perm/sec)   p_kst 3.860000e-01   p_cons 7.136000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000053/DYDC2.2_546_10000_0.386_0.7136_1.png
                gene_name: DYDC2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000053
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 53 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1551>
Subject: Job 9893920: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1551>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000054> was used as the working directory.
Started at Sat Oct  6 00:05:51 2012
Results reported at Sat Oct  6 00:18:57 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000054.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000054.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 54  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000054.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    874.33 sec.
    Max Memory :      3574 MB
    Max Swap   :      5944 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
54
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 54
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 54: processing genes 4779 - 4868
Calculating significance of each gene.
Using projection method.
4779	DYNC1I2	1.103365e-01
4780	DYNC1LI1	8.935078e-01
4781	DYNC1LI2	5.989559e-01
4782	DYNC2H1	2.802008e-01
4783	DYNC2LI1	4.715354e-02
4784	DYNLL1	1
4785	DYNLL2	1
4786	DYNLRB1	4.302326e-01
4787	DYNLRB2	3.466142e-01
4788	DYNLT1	1
4789	DYNLT3	1
4790	DYRK1A	6.224491e-01
4791	DYRK1B	3.480102e-01
4792	DYRK2	8.957508e-01
4793	DYRK3	9.770443e-03
4794	DYRK4	1.606544e-01
4795	DYSF	6.241980e-02
4796	DYSFIP1	3.368340e-01
4797	DYTN	7.865157e-02
4798	DYX1C1	6.674509e-01
4799	DZIP1	1.730526e-01
4800	DZIP1L	6.167858e-01
4801	DZIP3	5.500813e-01
4802	E2F1	1
4803	E2F2	9.249713e-01
4804	E2F3	4.618538e-01
4805	E2F4	7.116742e-01
4806	E2F5	1.661394e-01
4807	E2F6	1
4808	E2F7	7.366181e-03
4809	E2F8	4.126157e-01
4810	E4F1	1
4811	EAF1	6.081070e-01
4812	EAF2	1
4813	EAPP	9.488834e-02
4814	EARS2	1
4815	EBAG9	1.788913e-01
4816	EBF1	1.227246e-01
4817	EBF2	2.972619e-01
4818	EBF3	3.474617e-02
4819	EBI3	8.078495e-01
4820	EBLN2	2.736873e-01
4821	EBNA1BP2	4.445425e-01
4822	EBP	2.501334e-01
4823	EBPL	1
4824	ECD	6.016466e-01
4825	ECE1	4.835536e-01
4826	ECE2	3.317835e-01
4827	ECEL1	1
4828	ECH1	8.270181e-01
4829	ECHDC1	8.558840e-02
4830	ECHDC2	2.275846e-01
4831	ECHDC3	1
4832	ECHS1	1.976930e-01
4833	ECM1	7.942753e-01
4834	ECM2	1.924758e-01
4835	ECSCR	1
4836	ECSIT	3.969708e-01
4837	ECT2	2.089985e-01
4838	ECT2L	5.992615e-01
4839	EDA	7.644461e-01
4840	EDA2R	2.245299e-01
4841	EDAR	3.210694e-01
4842	EDARADD	6.008003e-01
4843	EDC3	1
4844	EDC4	9.299385e-01
4845	EDDM3A	3.517266e-01
4846	EDDM3B	1
4847	EDEM1	5.834465e-01
4848	EDEM2	2.385301e-01
4849	EDEM3	5.375005e-01
4850	EDF1	1
4851	EDIL3	1.483610e-01
4852	EDN1	6.017992e-01
4853	EDN2	1
4854	EDN3	6.228686e-01
4855	EDNRA	9.814615e-02
4856	EDNRB	4.392565e-05
4857	EEA1	2.667208e-01
4858	EED	6.237499e-01
4859	EEF1A1	4.638934e-01
4860	EEF1A2	8.990176e-01
4861	EEF1B2	6.458762e-01
4862	EEF1D	1
4863	EEF1E1	1
4864	EEF1G	8.262519e-01
4865	EEF2	9.377537e-01
4866	EEF2K	9.961668e-01
4867	EEFSEC	6.568671e-01
4868	EEPD1	6.288325e-01
Done

Running MutSig 2:
Scatter job 54: processing genes 4779 - 4868
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
DYNC2H1
Processing conservation and coverage...
75% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.458556e-02	ci left: 4.261509e-01	ci right 4.456865e-01	k: 4359	n:10000
Cons ci ratio: 6.626932e-02	ci left: 2.505337e-01	ci right 2.678068e-01	k: 2591	n:10000
KS ci ratio: 4.535527e-02	ci left: 4.177760e-01	ci right 4.372662e-01	k: 4275	n:10000
DYNC2H1   10000 perm   5 sec   (1917 perm/sec)   p_kst 4.275000e-01   p_cons 2.591000e-01   p_joint 4.359000e-01

Outputting figure to mutsig2_images.part000000000054/DYNC2H1.29_13305_10000_0.4275_0.2591_0.4359.png
                gene_name: DYNC2H1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 2 percent done.
DYSF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.265054e-01	ci left: 8.203252e-02	ci right 9.320908e-02	k: 875	n:10000
Cons ci ratio: 1.061502e-01	ci left: 1.135945e-01	ci right 1.264278e-01	k: 1199	n:10000
KS ci ratio: 1.013601e-01	ci left: 1.234670e-01	ci right 1.367493e-01	k: 1300	n:10000
DYSF   10000 perm   3 sec   (3236 perm/sec)   p_kst 1.300000e-01   p_cons 1.199000e-01   p_joint 8.750000e-02

Joint ci ratio: 9.490190e-02	ci left: 7.485789e-02	ci right 8.236516e-02	k: 1571	n:20000
Cons ci ratio: 7.331842e-02	ci left: 1.204463e-01	ci right 1.296630e-01	k: 2500	n:20000
KS ci ratio: 6.930433e-02	ci left: 1.331001e-01	ci right 1.427054e-01	k: 2757	n:20000
DYSF   20000 perm   7 sec   (2943 perm/sec)   p_kst 1.378500e-01   p_cons 1.250000e-01   p_joint 7.855000e-02

Outputting figure to mutsig2_images.part000000000054/DYSF.20_6722_20000_0.13785_0.125_0.07855.png
                gene_name: DYSF
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.082 

Current progress: 4 percent done.
DZIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.554271e-01	ci left: 5.513502e-02	ci right 6.452344e-02	k: 597	n:10000
Cons ci ratio: 4.970216e-02	ci left: 3.738555e-01	ci right 3.930125e-01	k: 3834	n:10000
KS ci ratio: 1.915330e-01	ci left: 3.633915e-02	ci right 4.413159e-02	k: 401	n:10000
DZIP1   10000 perm   2 sec   (4236 perm/sec)   p_kst 4.010000e-02   p_cons 3.834000e-01   p_joint 5.970000e-02

Joint ci ratio: 9.936204e-02	ci left: 6.860155e-02	ci right 7.582341e-02	k: 1443	n:20000
Cons ci ratio: 3.375126e-02	ci left: 3.959424e-01	ci right 4.095859e-01	k: 8055	n:20000
KS ci ratio: 1.341389e-01	ci left: 3.819702e-02	ci right 4.373744e-02	k: 818	n:20000
DZIP1   20000 perm   5 sec   (3808 perm/sec)   p_kst 4.090000e-02   p_cons 4.027500e-01   p_joint 7.215000e-02

Joint ci ratio: 8.108899e-02	ci left: 6.932881e-02	ci right 7.522101e-02	k: 2167	n:30000
Cons ci ratio: 2.751004e-02	ci left: 3.980411e-01	ci right 4.091776e-01	k: 12108	n:30000
KS ci ratio: 1.105372e-01	ci left: 3.800521e-02	ci right 4.248439e-02	k: 1206	n:30000
DZIP1   30000 perm   8 sec   (3669 perm/sec)   p_kst 4.020000e-02   p_cons 4.036000e-01   p_joint 7.223333e-02

Joint ci ratio: 7.334552e-02	ci left: 6.420023e-02	ci right 6.911291e-02	k: 2665	n:40000
Cons ci ratio: 2.378276e-02	ci left: 3.996350e-01	ci right 4.092789e-01	k: 16178	n:40000
KS ci ratio: 9.512444e-02	ci left: 3.878452e-02	ci right 4.268252e-02	k: 1628	n:40000
DZIP1   40000 perm   11 sec   (3580 perm/sec)   p_kst 4.070000e-02   p_cons 4.044500e-01   p_joint 6.662500e-02

Outputting figure to mutsig2_images.part000000000054/DZIP1.15_2684_40000_0.0407_0.40445_0.066625.png
                gene_name: DZIP1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.069 

Current progress: 6 percent done.
EDNRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.131657e-02	ci left: 3.589352e-01	ci right 3.779415e-01	k: 3684	n:10000
Cons ci ratio: 2.724812e-02	ci left: 6.649144e-01	ci right 6.833840e-01	k: 6742	n:10000
KS ci ratio: 6.757094e-02	ci left: 2.432172e-01	ci right 2.603276e-01	k: 2517	n:10000
EDNRB   10000 perm   2 sec   (5133 perm/sec)   p_kst 2.517000e-01   p_cons 6.742000e-01   p_joint 3.684000e-01

Outputting figure to mutsig2_images.part000000000054/EDNRB.12_1478_10000_0.2517_0.6742_0.3684.png
                gene_name: EDNRB
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 8 percent done.
E2F7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.029115e-01	ci left: 1.201421e-01	ci right 1.332762e-01	k: 1266	n:10000
Cons ci ratio: 4.865692e-02	ci left: 3.839072e-01	ci right 4.031548e-01	k: 3935	n:10000
KS ci ratio: 1.557042e-01	ci left: 5.494237e-02	ci right 6.431621e-02	k: 595	n:10000
E2F7   10000 perm   3 sec   (3890 perm/sec)   p_kst 5.950000e-02   p_cons 3.935000e-01   p_joint 1.266000e-01

Joint ci ratio: 7.759983e-02	ci left: 1.087421e-01	ci right 1.175707e-01	k: 2262	n:20000
Cons ci ratio: 3.544365e-02	ci left: 3.727178e-01	ci right 3.862172e-01	k: 7589	n:20000
KS ci ratio: 1.044404e-01	ci left: 6.235342e-02	ci right 6.927346e-02	k: 1315	n:20000
E2F7   20000 perm   5 sec   (3658 perm/sec)   p_kst 6.575000e-02   p_cons 3.794500e-01   p_joint 1.131000e-01

Joint ci ratio: 7.319263e-02	ci left: 8.406367e-02	ci right 9.048318e-02	k: 2617	n:30000
Cons ci ratio: 2.755007e-02	ci left: 3.973427e-01	ci right 4.084761e-01	k: 12087	n:30000
KS ci ratio: 8.427486e-02	ci left: 6.442489e-02	ci right 7.012592e-02	k: 2017	n:30000
E2F7   30000 perm   8 sec   (3560 perm/sec)   p_kst 6.723333e-02   p_cons 4.029000e-01   p_joint 8.723333e-02

Outputting figure to mutsig2_images.part000000000054/E2F7.11_2784_30000_0.067233_0.4029_0.087233.png
                gene_name: E2F7
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.090 

Current progress: 10 percent done.
DYTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.769452e-02	ci left: 5.096532e-01	ci right 5.293355e-01	k: 5195	n:10000
KS ci ratio: 1.001478e-02	ci left: 9.339228e-01	ci right 9.434196e-01	k: 9388	n:10000
DYTN   10000 perm   2 sec   (5588 perm/sec)   p_kst 9.388000e-01   p_cons 5.195000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/DYTN.9_1785_10000_0.9388_0.5195_1.png
                gene_name: DYTN
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
ECE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.372486e-02	ci left: 5.648393e-01	ci right 5.843172e-01	k: 5746	n:10000
Cons ci ratio: 3.293807e-02	ci left: 5.763726e-01	ci right 5.957772e-01	k: 5861	n:10000
KS ci ratio: 4.090877e-02	ci left: 4.687666e-01	ci right 4.884459e-01	k: 4786	n:10000
ECE2   10000 perm   2 sec   (4250 perm/sec)   p_kst 4.786000e-01   p_cons 5.861000e-01   p_joint 5.746000e-01

Outputting figure to mutsig2_images.part000000000054/ECE2.9_3292_10000_0.4786_0.5861_0.5746.png
                gene_name: ECE2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 14 percent done.
EEA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.984534e-02	ci left: 7.879663e-01	ci right 8.038610e-01	k: 7960	n:10000
Cons ci ratio: 3.838059e-03	ci left: 9.885089e-01	ci right 9.923974e-01	k: 9906	n:10000
KS ci ratio: 2.806431e-02	ci left: 6.517269e-01	ci right 6.703792e-01	k: 6611	n:10000
EEA1   10000 perm   2 sec   (4005 perm/sec)   p_kst 6.611000e-01   p_cons 9.906000e-01   p_joint 7.960000e-01

Outputting figure to mutsig2_images.part000000000054/EEA1.9_4352_10000_0.6611_0.9906_0.796.png
                gene_name: EEA1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 16 percent done.
DYRK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.474812e-01	ci left: 3.713306e-03	ci right 6.586626e-03	k: 50	n:10000
Cons ci ratio: 6.346671e-01	ci left: 2.606439e-03	ci right 5.096391e-03	k: 37	n:10000
KS ci ratio: 1.264263e-01	ci left: 8.212963e-02	ci right 9.331191e-02	k: 876	n:10000
DYRK3   10000 perm   2 sec   (5574 perm/sec)   p_kst 8.760000e-02   p_cons 3.700000e-03   p_joint 5.000000e-03

Joint ci ratio: 2.146584e-01	ci left: 1.463801e-02	ci right 1.820458e-02	k: 327	n:20000
Cons ci ratio: 4.780895e-01	ci left: 2.553111e-03	ci right 4.196522e-03	k: 66	n:20000
KS ci ratio: 9.073774e-02	ci left: 8.146427e-02	ci right 8.925677e-02	k: 1706	n:20000
DYRK3   20000 perm   4 sec   (4901 perm/sec)   p_kst 8.530000e-02   p_cons 3.300000e-03   p_joint 1.635000e-02

Joint ci ratio: 2.344363e-01	ci left: 8.150696e-03	ci right 1.034592e-02	k: 276	n:30000
Cons ci ratio: 4.196513e-01	ci left: 2.293583e-03	ci right 3.539117e-03	k: 86	n:30000
KS ci ratio: 7.496317e-02	ci left: 8.039339e-02	ci right 8.668754e-02	k: 2505	n:30000
DYRK3   30000 perm   6 sec   (4672 perm/sec)   p_kst 8.350000e-02   p_cons 2.866667e-03   p_joint 9.200000e-03

Joint ci ratio: 1.601873e-01	ci left: 1.356744e-02	ci right 1.595376e-02	k: 589	n:40000
Cons ci ratio: 3.634302e-01	ci left: 2.374173e-03	ci right 3.450008e-03	k: 115	n:40000
KS ci ratio: 6.439938e-02	ci left: 8.203837e-02	ci right 8.752208e-02	k: 3390	n:40000
DYRK3   40000 perm   9 sec   (4514 perm/sec)   p_kst 8.475000e-02   p_cons 2.875000e-03   p_joint 1.472500e-02

Joint ci ratio: 1.382709e-01	ci left: 1.472515e-02	ci right 1.693159e-02	k: 790	n:50000
Cons ci ratio: 3.420396e-01	ci left: 2.172736e-03	ci right 3.086536e-03	k: 130	n:50000
KS ci ratio: 5.739196e-02	ci left: 8.288549e-02	ci right 8.780277e-02	k: 4266	n:50000
DYRK3   50000 perm   11 sec   (4394 perm/sec)   p_kst 8.532000e-02   p_cons 2.600000e-03   p_joint 1.580000e-02

Joint ci ratio: 1.389914e-01	ci left: 1.217329e-02	ci right 1.400759e-02	k: 784	n:60000
Cons ci ratio: 3.154743e-01	ci left: 2.162355e-03	ci right 2.986936e-03	k: 153	n:60000
KS ci ratio: 5.239376e-02	ci left: 8.309318e-02	ci right 8.758035e-02	k: 5119	n:60000
DYRK3   60000 perm   14 sec   (4282 perm/sec)   p_kst 8.531667e-02   p_cons 2.550000e-03   p_joint 1.306667e-02

Joint ci ratio: 1.306342e-01	ci left: 1.186976e-02	ci right 1.354242e-02	k: 888	n:70000
Cons ci ratio: 2.942704e-01	ci left: 2.156911e-03	ci right 2.913838e-03	k: 176	n:70000
KS ci ratio: 4.859327e-02	ci left: 8.298652e-02	ci right 8.713366e-02	k: 5953	n:70000
DYRK3   70000 perm   17 sec   (4204 perm/sec)   p_kst 8.504286e-02   p_cons 2.514286e-03   p_joint 1.268571e-02

Joint ci ratio: 1.291330e-01	ci left: 1.065167e-02	ci right 1.213408e-02	k: 910	n:80000
Cons ci ratio: 2.768374e-01	ci left: 2.154225e-03	ci right 2.857629e-03	k: 199	n:80000
KS ci ratio: 4.543507e-02	ci left: 8.318764e-02	ci right 8.706750e-02	k: 6809	n:80000
DYRK3   80000 perm   19 sec   (4128 perm/sec)   p_kst 8.511250e-02   p_cons 2.487500e-03   p_joint 1.137500e-02

Joint ci ratio: 1.361828e-01	ci left: 8.500656e-03	ci right 9.753512e-03	k: 820	n:90000
Cons ci ratio: 2.621758e-01	ci left: 2.153166e-03	ci right 2.812888e-03	k: 222	n:90000
KS ci ratio: 4.289862e-02	ci left: 8.307582e-02	ci right 8.672877e-02	k: 7640	n:90000
DYRK3   90000 perm   22 sec   (4056 perm/sec)   p_kst 8.488889e-02   p_cons 2.466667e-03   p_joint 9.111111e-03

Joint ci ratio: 1.218706e-01	ci left: 9.615570e-03	ci right 1.087308e-02	k: 1023	n:100000
Cons ci ratio: 2.461351e-01	ci left: 2.218766e-03	ci right 2.850640e-03	k: 252	n:100000
KS ci ratio: 4.040666e-02	ci left: 8.427925e-02	ci right 8.776481e-02	k: 8601	n:100000
DYRK3   100000 perm   25 sec   (3974 perm/sec)   p_kst 8.601000e-02   p_cons 2.520000e-03   p_joint 1.023000e-02

Joint ci ratio: 1.030948e-01	ci left: 1.230349e-02	ci right 1.364965e-02	k: 1426	n:110000
Cons ci ratio: 2.230488e-01	ci left: 2.487779e-03	ci right 3.120706e-03	k: 307	n:110000
KS ci ratio: 3.914320e-02	ci left: 8.191671e-02	ci right 8.519619e-02	k: 9190	n:110000
DYRK3   110000 perm   28 sec   (3902 perm/sec)   p_kst 8.354545e-02   p_cons 2.790909e-03   p_joint 1.296364e-02

Joint ci ratio: 9.133938e-02	ci left: 1.442573e-02	ci right 1.581452e-02	k: 1813	n:120000
Cons ci ratio: 2.135530e-01	ci left: 2.501046e-03	ci right 3.106712e-03	k: 335	n:120000
KS ci ratio: 3.754535e-02	ci left: 8.170938e-02	ci right 8.484412e-02	k: 9992	n:120000
DYRK3   120000 perm   31 sec   (3833 perm/sec)   p_kst 8.326667e-02   p_cons 2.791667e-03   p_joint 1.510833e-02

Joint ci ratio: 9.103769e-02	ci left: 1.342097e-02	ci right 1.470853e-02	k: 1827	n:130000
Cons ci ratio: 2.029508e-01	ci left: 2.571157e-03	ci right 3.159059e-03	k: 371	n:130000
KS ci ratio: 3.607015e-02	ci left: 8.178043e-02	ci right 8.479204e-02	k: 10826	n:130000
DYRK3   130000 perm   35 sec   (3765 perm/sec)   p_kst 8.327692e-02   p_cons 2.853846e-03   p_joint 1.405385e-02

Joint ci ratio: 9.226755e-02	ci left: 1.214092e-02	ci right 1.332225e-02	k: 1781	n:140000
Cons ci ratio: 1.952302e-01	ci left: 2.591112e-03	ci right 3.158360e-03	k: 401	n:140000
KS ci ratio: 3.479364e-02	ci left: 8.168041e-02	ci right 8.457974e-02	k: 11637	n:140000
DYRK3   140000 perm   38 sec   (3706 perm/sec)   p_kst 8.312143e-02   p_cons 2.864286e-03   p_joint 1.272143e-02

Joint ci ratio: 8.209256e-02	ci left: 1.435827e-02	ci right 1.559392e-02	k: 2245	n:150000
Cons ci ratio: 1.894313e-01	ci left: 2.577012e-03	ci right 3.122487e-03	k: 426	n:150000
KS ci ratio: 3.365108e-02	ci left: 8.156230e-02	ci right 8.436052e-02	k: 12443	n:150000
DYRK3   150000 perm   41 sec   (3639 perm/sec)   p_kst 8.295333e-02   p_cons 2.840000e-03   p_joint 1.496667e-02

Joint ci ratio: 8.606416e-02	ci left: 1.224880e-02	ci right 1.335646e-02	k: 2047	n:160000
Cons ci ratio: 1.853579e-01	ci left: 2.529122e-03	ci right 3.051654e-03	k: 445	n:160000
KS ci ratio: 3.258333e-02	ci left: 8.160301e-02	ci right 8.431212e-02	k: 13272	n:160000
DYRK3   160000 perm   45 sec   (3577 perm/sec)   p_kst 8.295000e-02   p_cons 2.781250e-03   p_joint 1.279375e-02

Joint ci ratio: 8.440285e-02	ci left: 1.200029e-02	ci right 1.306349e-02	k: 2129	n:170000
Cons ci ratio: 1.792320e-01	ci left: 2.554386e-03	ci right 3.062805e-03	k: 476	n:170000
KS ci ratio: 3.160261e-02	ci left: 8.168106e-02	ci right 8.430965e-02	k: 14108	n:170000
DYRK3   170000 perm   48 sec   (3523 perm/sec)   p_kst 8.298824e-02   p_cons 2.800000e-03   p_joint 1.252353e-02

Joint ci ratio: 8.203026e-02	ci left: 1.201360e-02	ci right 1.304663e-02	k: 2254	n:180000
Cons ci ratio: 1.735046e-01	ci left: 2.582410e-03	ci right 3.078262e-03	k: 508	n:180000
KS ci ratio: 3.071216e-02	ci left: 8.171842e-02	ci right 8.427280e-02	k: 14938	n:180000
DYRK3   180000 perm   52 sec   (3471 perm/sec)   p_kst 8.298889e-02   p_cons 2.822222e-03   p_joint 1.252222e-02

Joint ci ratio: 8.143857e-02	ci left: 1.155648e-02	ci right 1.254270e-02	k: 2288	n:190000
Cons ci ratio: 1.698752e-01	ci left: 2.557305e-03	ci right 3.037012e-03	k: 530	n:190000
KS ci ratio: 2.988986e-02	ci left: 8.176847e-02	ci right 8.425480e-02	k: 15771	n:190000
DYRK3   190000 perm   56 sec   (3405 perm/sec)   p_kst 8.300526e-02   p_cons 2.789474e-03   p_joint 1.204211e-02

Joint ci ratio: 7.901998e-02	ci left: 1.167444e-02	ci right 1.263978e-02	k: 2430	n:200000
Cons ci ratio: 1.657148e-01	ci left: 2.558771e-03	ci right 3.025825e-03	k: 557	n:200000
KS ci ratio: 2.915517e-02	ci left: 8.168520e-02	ci right 8.410691e-02	k: 16578	n:200000
DYRK3   200000 perm   60 sec   (3351 perm/sec)   p_kst 8.289000e-02   p_cons 2.785000e-03   p_joint 1.215000e-02

Joint ci ratio: 7.962508e-02	ci left: 1.095499e-02	ci right 1.186809e-02	k: 2395	n:210000
Cons ci ratio: 1.622635e-01	ci left: 2.546519e-03	ci right 3.000712e-03	k: 581	n:210000
KS ci ratio: 2.845071e-02	ci left: 8.172408e-02	ci right 8.408745e-02	k: 17409	n:210000
DYRK3   210000 perm   64 sec   (3305 perm/sec)   p_kst 8.290000e-02   p_cons 2.766667e-03   p_joint 1.140476e-02

Joint ci ratio: 8.383177e-02	ci left: 9.428169e-03	ci right 1.025755e-02	k: 2164	n:220000
Cons ci ratio: 1.578482e-01	ci left: 2.574764e-03	ci right 3.020315e-03	k: 614	n:220000
KS ci ratio: 2.780577e-02	ci left: 8.170136e-02	ci right 8.400965e-02	k: 18227	n:220000
DYRK3   220000 perm   68 sec   (3258 perm/sec)   p_kst 8.285000e-02   p_cons 2.790909e-03   p_joint 9.836364e-03

Joint ci ratio: 8.251368e-02	ci left: 9.316244e-03	ci right 1.012227e-02	k: 2234	n:230000
Cons ci ratio: 1.540133e-01	ci left: 2.592343e-03	ci right 3.029032e-03	k: 645	n:230000
KS ci ratio: 2.720045e-02	ci left: 8.169413e-02	ci right 8.395118e-02	k: 19048	n:230000
DYRK3   230000 perm   72 sec   (3210 perm/sec)   p_kst 8.281739e-02   p_cons 2.804348e-03   p_joint 9.713043e-03

Joint ci ratio: 8.219710e-02	ci left: 9.001462e-03	ci right 9.777122e-03	k: 2252	n:240000
Cons ci ratio: 1.503336e-01	ci left: 2.612588e-03	ci right 3.041226e-03	k: 677	n:240000
KS ci ratio: 2.659728e-02	ci left: 8.189094e-02	ci right 8.410248e-02	k: 19918	n:240000
DYRK3   240000 perm   76 sec   (3161 perm/sec)   p_kst 8.299167e-02   p_cons 2.820833e-03   p_joint 9.383333e-03

Joint ci ratio: 7.877432e-02	ci left: 9.421466e-03	ci right 1.019796e-02	k: 2451	n:250000
Cons ci ratio: 1.470095e-01	ci left: 2.627473e-03	ci right 3.048184e-03	k: 708	n:250000
KS ci ratio: 2.607153e-02	ci left: 8.184585e-02	ci right 8.401183e-02	k: 20731	n:250000
DYRK3   250000 perm   80 sec   (3116 perm/sec)   p_kst 8.292400e-02   p_cons 2.832000e-03   p_joint 9.804000e-03

Joint ci ratio: 6.318335e-02	ci left: 1.412730e-02	ci right 1.505280e-02	k: 3792	n:260000
Cons ci ratio: 1.258892e-01	ci left: 3.481423e-03	ci right 3.952823e-03	k: 965	n:260000
KS ci ratio: 2.558483e-02	ci left: 8.175110e-02	ci right 8.387359e-02	k: 21530	n:260000
DYRK3   260000 perm   85 sec   (3077 perm/sec)   p_kst 8.280769e-02   p_cons 3.711538e-03   p_joint 1.458462e-02

Joint ci ratio: 6.427475e-02	ci left: 1.315191e-02	ci right 1.402894e-02	k: 3668	n:270000
Cons ci ratio: 1.229318e-01	ci left: 3.521143e-03	ci right 3.985905e-03	k: 1012	n:270000
KS ci ratio: 2.508952e-02	ci left: 8.187363e-02	ci right 8.395755e-02	k: 22386	n:270000
DYRK3   270000 perm   89 sec   (3039 perm/sec)   p_kst 8.291111e-02   p_cons 3.748148e-03   p_joint 1.358519e-02

Joint ci ratio: 6.185864e-02	ci left: 1.370171e-02	ci right 1.457982e-02	k: 3958	n:280000
Cons ci ratio: 1.206889e-01	ci left: 3.526968e-03	ci right 3.983398e-03	k: 1050	n:280000
KS ci ratio: 2.465546e-02	ci left: 8.178179e-02	ci right 8.382685e-02	k: 23184	n:280000
DYRK3   280000 perm   93 sec   (3002 perm/sec)   p_kst 8.280000e-02   p_cons 3.750000e-03   p_joint 1.413571e-02

Joint ci ratio: 6.038362e-02	ci left: 1.389141e-02	ci right 1.475971e-02	k: 4153	n:290000
Cons ci ratio: 1.193369e-01	ci left: 3.485618e-03	ci right 3.931287e-03	k: 1074	n:290000
KS ci ratio: 2.422281e-02	ci left: 8.182346e-02	ci right 8.383316e-02	k: 24019	n:290000
DYRK3   290000 perm   98 sec   (2966 perm/sec)   p_kst 8.282414e-02   p_cons 3.703448e-03   p_joint 1.432069e-02

Joint ci ratio: 5.016230e-02	ci left: 1.944932e-02	ci right 2.045332e-02	k: 5984	n:300000
Cons ci ratio: 1.178142e-01	ci left: 3.459993e-03	ci right 3.896348e-03	k: 1102	n:300000
KS ci ratio: 2.388295e-02	ci left: 8.141509e-02	ci right 8.338631e-02	k: 24719	n:300000
DYRK3   300000 perm   102 sec   (2929 perm/sec)   p_kst 8.239667e-02   p_cons 3.673333e-03   p_joint 1.994667e-02

Joint ci ratio: 4.973988e-02	ci left: 1.915314e-02	ci right 2.013328e-02	k: 6088	n:310000
Cons ci ratio: 1.153797e-01	ci left: 3.495575e-03	ci right 3.926688e-03	k: 1149	n:310000
KS ci ratio: 2.351264e-02	ci left: 8.131562e-02	ci right 8.325349e-02	k: 25507	n:310000
DYRK3   310000 perm   107 sec   (2892 perm/sec)   p_kst 8.228065e-02   p_cons 3.706452e-03   p_joint 1.963871e-02

Joint ci ratio: 4.899001e-02	ci left: 1.913485e-02	ci right 2.009888e-02	k: 6276	n:320000
Cons ci ratio: 1.133757e-01	ci left: 3.510799e-03	ci right 3.935766e-03	k: 1190	n:320000
KS ci ratio: 2.314227e-02	ci left: 8.133138e-02	ci right 8.323869e-02	k: 26330	n:320000
DYRK3   320000 perm   112 sec   (2855 perm/sec)   p_kst 8.228125e-02   p_cons 3.718750e-03   p_joint 1.961250e-02

Joint ci ratio: 4.832646e-02	ci left: 1.907585e-02	ci right 2.002352e-02	k: 6450	n:330000
Cons ci ratio: 1.115635e-01	ci left: 3.519269e-03	ci right 3.938005e-03	k: 1229	n:330000
KS ci ratio: 2.277652e-02	ci left: 8.142781e-02	ci right 8.330680e-02	k: 27180	n:330000
DYRK3   330000 perm   117 sec   (2820 perm/sec)   p_kst 8.236364e-02   p_cons 3.724242e-03   p_joint 1.954545e-02

Joint ci ratio: 5.267181e-02	ci left: 1.560702e-02	ci right 1.645419e-02	k: 5449	n:340000
Cons ci ratio: 1.096189e-01	ci left: 3.541596e-03	ci right 3.955168e-03	k: 1273	n:340000
KS ci ratio: 2.244242e-02	ci left: 8.141930e-02	ci right 8.327018e-02	k: 27996	n:340000
DYRK3   340000 perm   122 sec   (2787 perm/sec)   p_kst 8.234118e-02   p_cons 3.744118e-03   p_joint 1.602647e-02

Joint ci ratio: 5.185895e-02	ci left: 1.564612e-02	ci right 1.648192e-02	k: 5621	n:350000
Cons ci ratio: 1.079784e-01	ci left: 3.548804e-03	ci right 3.956622e-03	k: 1312	n:350000
KS ci ratio: 2.210505e-02	ci left: 8.153086e-02	ci right 8.335606e-02	k: 28854	n:350000
DYRK3   350000 perm   127 sec   (2754 perm/sec)   p_kst 8.244000e-02   p_cons 3.748571e-03   p_joint 1.606000e-02

Joint ci ratio: 5.112746e-02	ci left: 1.565572e-02	ci right 1.647988e-02	k: 5783	n:360000
Cons ci ratio: 1.062125e-01	ci left: 3.569177e-03	ci right 3.972209e-03	k: 1356	n:360000
KS ci ratio: 2.179165e-02	ci left: 8.157284e-02	ci right 8.337277e-02	k: 29689	n:360000
DYRK3   360000 perm   132 sec   (2722 perm/sec)   p_kst 8.246944e-02   p_cons 3.766667e-03   p_joint 1.606389e-02

Joint ci ratio: 5.215093e-02	ci left: 1.464814e-02	ci right 1.543516e-02	k: 5564	n:370000
Cons ci ratio: 1.047181e-01	ci left: 3.575338e-03	ci right 3.973036e-03	k: 1395	n:370000
KS ci ratio: 2.149466e-02	ci left: 8.158853e-02	ci right 8.336396e-02	k: 30515	n:370000
DYRK3   370000 perm   138 sec   (2690 perm/sec)   p_kst 8.247297e-02   p_cons 3.770270e-03   p_joint 1.503784e-02

Joint ci ratio: 5.544316e-02	ci left: 1.262408e-02	ci right 1.334653e-02	k: 4933	n:380000
Cons ci ratio: 1.031770e-01	ci left: 3.588904e-03	ci right 3.981880e-03	k: 1437	n:380000
KS ci ratio: 2.122278e-02	ci left: 8.150927e-02	ci right 8.326027e-02	k: 31305	n:380000
DYRK3   380000 perm   143 sec   (2659 perm/sec)   p_kst 8.238158e-02   p_cons 3.781579e-03   p_joint 1.298158e-02

Joint ci ratio: 5.473235e-02	ci left: 1.262660e-02	ci right 1.333964e-02	k: 5062	n:390000
Cons ci ratio: 1.021183e-01	ci left: 3.571828e-03	ci right 3.958679e-03	k: 1467	n:390000
KS ci ratio: 2.094354e-02	ci left: 8.155925e-02	ci right 8.328799e-02	k: 32144	n:390000
DYRK3   390000 perm   148 sec   (2630 perm/sec)   p_kst 8.242051e-02   p_cons 3.761538e-03   p_joint 1.297949e-02

Joint ci ratio: 5.507838e-02	ci left: 1.216045e-02	ci right 1.285164e-02	k: 5001	n:400000
Cons ci ratio: 1.014662e-01	ci left: 3.528819e-03	ci right 3.908426e-03	k: 1486	n:400000
KS ci ratio: 2.069385e-02	ci left: 8.147002e-02	ci right 8.317604e-02	k: 32928	n:400000
DYRK3   400000 perm   154 sec   (2600 perm/sec)   p_kst 8.232000e-02   p_cons 3.715000e-03   p_joint 1.250250e-02

Joint ci ratio: 5.479924e-02	ci left: 1.198891e-02	ci right 1.266679e-02	k: 5053	n:410000
Cons ci ratio: 1.002599e-01	ci left: 3.528340e-03	ci right 3.903118e-03	k: 1522	n:410000
KS ci ratio: 2.045024e-02	ci left: 8.140468e-02	ci right 8.308903e-02	k: 33720	n:410000
DYRK3   410000 perm   160 sec   (2570 perm/sec)   p_kst 8.224390e-02   p_cons 3.712195e-03   p_joint 1.232439e-02

Joint ci ratio: 5.412320e-02	ci left: 1.200172e-02	ci right 1.267170e-02	k: 5180	n:420000
Cons ci ratio: 9.909574e-02	ci left: 3.527909e-03	ci right 3.898037e-03	k: 1558	n:420000
KS ci ratio: 2.019782e-02	ci left: 8.147055e-02	ci right 8.313521e-02	k: 34566	n:420000
DYRK3   420000 perm   165 sec   (2543 perm/sec)   p_kst 8.230000e-02   p_cons 3.709524e-03   p_joint 1.233333e-02

Outputting figure to mutsig2_images.part000000000054/DYRK3.8_1800_420000_0.0823_0.0037095_0.012333.png
                gene_name: DYRK3
               theta_stop: 0.099 
                    nperm: 420000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.0037 
      ci_cons_bounds_left: 0.0035 
     ci_cons_bounds_right: 0.0039 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 18 percent done.
DYNC2LI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.752686e-02	ci left: 1.956464e-01	ci right 2.115267e-01	k: 2035	n:10000
Cons ci ratio: 3.143295e-02	ci left: 5.989536e-01	ci right 6.181831e-01	k: 6086	n:10000
KS ci ratio: 1.200793e-01	ci left: 9.048895e-02	ci right 1.021474e-01	k: 962	n:10000
DYNC2LI1   10000 perm   2 sec   (5772 perm/sec)   p_kst 9.620000e-02   p_cons 6.086000e-01   p_joint 2.035000e-01

Joint ci ratio: 6.149698e-02	ci left: 1.636322e-01	ci right 1.740643e-01	k: 3376	n:20000
Cons ci ratio: 2.255555e-02	ci left: 5.947757e-01	ci right 6.083948e-01	k: 12032	n:20000
KS ci ratio: 8.392559e-02	ci left: 9.420749e-02	ci right 1.025097e-01	k: 1966	n:20000
DYNC2LI1   20000 perm   4 sec   (4984 perm/sec)   p_kst 9.830000e-02   p_cons 6.016000e-01   p_joint 1.688000e-01

Outputting figure to mutsig2_images.part000000000054/DYNC2LI1.7_1219_20000_0.0983_0.6016_0.1688.png
                gene_name: DYNC2LI1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 20 percent done.
EBF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.072868e-02	ci left: 1.501165e-01	ci right 1.644837e-01	k: 1572	n:10000
Cons ci ratio: 4.473999e-02	ci left: 4.244558e-01	ci right 4.439826e-01	k: 4342	n:10000
KS ci ratio: 1.177263e-01	ci left: 9.389515e-02	ci right 1.057391e-01	k: 997	n:10000
EBF3   10000 perm   2 sec   (5037 perm/sec)   p_kst 9.970000e-02   p_cons 4.342000e-01   p_joint 1.572000e-01

Joint ci ratio: 7.270505e-02	ci left: 1.222671e-01	ci right 1.315416e-01	k: 2537	n:20000
Cons ci ratio: 3.118888e-02	ci left: 4.343524e-01	ci right 4.481646e-01	k: 8825	n:20000
KS ci ratio: 8.285527e-02	ci left: 9.646450e-02	ci right 1.048520e-01	k: 2012	n:20000
EBF3   20000 perm   4 sec   (4515 perm/sec)   p_kst 1.006000e-01   p_cons 4.412500e-01   p_joint 1.268500e-01

Outputting figure to mutsig2_images.part000000000054/EBF3.7_1720_20000_0.1006_0.44125_0.12685.png
                gene_name: EBF3
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 22 percent done.
DYNC1I2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.362230e-02	ci left: 8.860594e-01	ci right 8.983110e-01	k: 8923	n:10000
Cons ci ratio: 1.180587e-02	ci left: 9.113176e-01	ci right 9.222382e-01	k: 9169	n:10000
KS ci ratio: 2.558774e-02	ci left: 6.921210e-01	ci right 7.101617e-01	k: 7012	n:10000
DYNC1I2   10000 perm   2 sec   (4581 perm/sec)   p_kst 7.012000e-01   p_cons 9.169000e-01   p_joint 8.923000e-01

Outputting figure to mutsig2_images.part000000000054/DYNC1I2.6_1985_10000_0.7012_0.9169_0.8923.png
                gene_name: DYNC1I2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 24 percent done.
DZIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.372743e-02	ci left: 3.379640e-01	ci right 3.567250e-01	k: 3473	n:10000
Cons ci ratio: 4.556899e-02	ci left: 4.154834e-01	ci right 4.349602e-01	k: 4252	n:10000
KS ci ratio: 6.728524e-02	ci left: 2.447989e-01	ci right 2.619450e-01	k: 2533	n:10000
DZIP3   10000 perm   2 sec   (4482 perm/sec)   p_kst 2.533000e-01   p_cons 4.252000e-01   p_joint 3.473000e-01

Outputting figure to mutsig2_images.part000000000054/DZIP3.6_3751_10000_0.2533_0.4252_0.3473.png
                gene_name: DZIP3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 25 percent done.
EBF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.353171e-02	ci left: 4.379204e-01	ci right 4.575101e-01	k: 4477	n:10000
Cons ci ratio: 1.393752e-01	ci left: 6.816984e-02	ci right 7.848038e-02	k: 732	n:10000
KS ci ratio: 2.589334e-02	ci left: 6.870800e-01	ci right 7.052056e-01	k: 6962	n:10000
EBF1   10000 perm   2 sec   (5448 perm/sec)   p_kst 6.962000e-01   p_cons 7.320000e-02   p_joint 4.477000e-01

Joint ci ratio: 3.534602e-02	ci left: 3.740132e-01	ci right 3.875215e-01	k: 7615	n:20000
Cons ci ratio: 9.769493e-02	ci left: 7.084903e-02	ci right 7.817525e-02	k: 1489	n:20000
KS ci ratio: 1.859168e-02	ci left: 6.832363e-01	ci right 6.961085e-01	k: 13794	n:20000
EBF1   20000 perm   4 sec   (4660 perm/sec)   p_kst 6.897000e-01   p_cons 7.445000e-02   p_joint 3.807500e-01

Outputting figure to mutsig2_images.part000000000054/EBF1.6_1840_20000_0.6897_0.07445_0.38075.png
                gene_name: EBF1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 27 percent done.
DYRK1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.971065e-02	ci left: 6.255764e-01	ci right 6.445448e-01	k: 6351	n:10000
Cons ci ratio: 5.802118e-02	ci left: 3.042144e-01	ci right 3.224944e-01	k: 3133	n:10000
KS ci ratio: 1.968030e-02	ci left: 7.907046e-01	ci right 8.065211e-01	k: 7987	n:10000
DYRK1A   10000 perm   2 sec   (4979 perm/sec)   p_kst 7.987000e-01   p_cons 3.133000e-01   p_joint 6.351000e-01

Outputting figure to mutsig2_images.part000000000054/DYRK1A.5_2420_10000_0.7987_0.3133_0.6351.png
                gene_name: DYRK1A
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 29 percent done.
E2F8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.668181e-02	ci left: 8.394879e-01	ci right 8.537096e-01	k: 8467	n:10000
Cons ci ratio: 2.351896e-02	ci left: 7.265354e-01	ci right 7.439273e-01	k: 7353	n:10000
KS ci ratio: 3.530301e-02	ci left: 5.422895e-01	ci right 5.618801e-01	k: 5521	n:10000
E2F8   10000 perm   2 sec   (4885 perm/sec)   p_kst 5.521000e-01   p_cons 7.353000e-01   p_joint 8.467000e-01

Outputting figure to mutsig2_images.part000000000054/E2F8.5_2652_10000_0.5521_0.7353_0.8467.png
                gene_name: E2F8
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 31 percent done.
ECE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.145642e-01	ci left: 9.876499e-02	ci right 1.108663e-01	k: 1047	n:10000
Cons ci ratio: 4.462184e-02	ci left: 4.257520e-01	ci right 4.452856e-01	k: 4355	n:10000
KS ci ratio: 1.730584e-01	ci left: 4.456333e-02	ci right 5.310195e-02	k: 487	n:10000
ECE1   10000 perm   2 sec   (5348 perm/sec)   p_kst 4.870000e-02   p_cons 4.355000e-01   p_joint 1.047000e-01

Joint ci ratio: 6.550780e-02	ci left: 1.468529e-01	ci right 1.568486e-01	k: 3036	n:20000
Cons ci ratio: 3.188462e-02	ci left: 4.235235e-01	ci right 4.372968e-01	k: 8608	n:20000
KS ci ratio: 1.235762e-01	ci left: 4.493272e-02	ci right 5.089960e-02	k: 957	n:20000
ECE1   20000 perm   5 sec   (4441 perm/sec)   p_kst 4.785000e-02   p_cons 4.304000e-01   p_joint 1.518000e-01

Joint ci ratio: 5.597645e-02	ci left: 1.365530e-01	ci right 1.444501e-01	k: 4214	n:30000
Cons ci ratio: 2.715889e-02	ci left: 4.042272e-01	ci right 4.153903e-01	k: 12294	n:30000
KS ci ratio: 1.001703e-01	ci left: 4.612881e-02	ci right 5.102575e-02	k: 1456	n:30000
ECE1   30000 perm   7 sec   (4307 perm/sec)   p_kst 4.853333e-02   p_cons 4.098000e-01   p_joint 1.404667e-01

Joint ci ratio: 4.620932e-02	ci left: 1.489402e-01	ci right 1.560103e-01	k: 6098	n:40000
Cons ci ratio: 2.350121e-02	ci left: 4.053739e-01	ci right 4.150391e-01	k: 16408	n:40000
KS ci ratio: 8.700168e-02	ci left: 4.619480e-02	ci right 5.042109e-02	k: 1931	n:40000
ECE1   40000 perm   10 sec   (4167 perm/sec)   p_kst 4.827500e-02   p_cons 4.102000e-01   p_joint 1.524500e-01

Outputting figure to mutsig2_images.part000000000054/ECE1.5_2540_40000_0.048275_0.4102_0.15245.png
                gene_name: ECE1
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 33 percent done.
ECT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.925084e-02	ci left: 6.328151e-01	ci right 6.517020e-01	k: 6423	n:10000
Cons ci ratio: 7.769459e-02	ci left: 1.949567e-01	ci right 2.108168e-01	k: 2028	n:10000
KS ci ratio: 1.674599e-02	ci left: 8.384694e-01	ci right 8.527287e-01	k: 8457	n:10000
ECT2   10000 perm   2 sec   (5005 perm/sec)   p_kst 8.457000e-01   p_cons 2.028000e-01   p_joint 6.423000e-01

Outputting figure to mutsig2_images.part000000000054/ECT2.5_2744_10000_0.8457_0.2028_0.6423.png
                gene_name: ECT2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 35 percent done.
ECT2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.683359e-02	ci left: 6.716624e-01	ci right 6.900322e-01	k: 6809	n:10000
KS ci ratio: 1.086698e-02	ci left: 9.234805e-01	ci right 9.336681e-01	k: 9287	n:10000
ECT2L   10000 perm   2 sec   (4241 perm/sec)   p_kst 9.287000e-01   p_cons 6.809000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/ECT2L.5_2795_10000_0.9287_0.6809_1.png
                gene_name: ECT2L
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
DYRK1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.438733e-01	ci left: 6.410846e-02	ci right 7.414431e-02	k: 690	n:10000
Cons ci ratio: 4.602876e-01	ci left: 5.549202e-03	ci right 8.947365e-03	k: 71	n:10000
KS ci ratio: 1.799496e-01	ci left: 4.121131e-02	ci right 4.945618e-02	k: 452	n:10000
DYRK1B   10000 perm   2 sec   (5381 perm/sec)   p_kst 4.520000e-02   p_cons 7.100000e-03   p_joint 6.900000e-02

Joint ci ratio: 1.585670e-01	ci left: 2.729474e-02	ci right 3.204331e-02	k: 592	n:20000
Cons ci ratio: 3.644804e-01	ci left: 4.704030e-03	ci right 6.843509e-03	k: 114	n:20000
KS ci ratio: 1.260130e-01	ci left: 4.323490e-02	ci right 4.909795e-02	k: 922	n:20000
DYRK1B   20000 perm   4 sec   (4740 perm/sec)   p_kst 4.610000e-02   p_cons 5.700000e-03   p_joint 2.960000e-02

Joint ci ratio: 1.649973e-01	ci left: 1.694132e-02	ci right 2.001961e-02	k: 553	n:30000
Cons ci ratio: 2.954537e-01	ci left: 4.972185e-03	ci right 6.725594e-03	k: 174	n:30000
KS ci ratio: 1.037771e-01	ci left: 4.303921e-02	ci right 4.778266e-02	k: 1361	n:30000
DYRK1B   30000 perm   7 sec   (4542 perm/sec)   p_kst 4.536667e-02   p_cons 5.800000e-03   p_joint 1.843333e-02

Joint ci ratio: 1.217156e-01	ci left: 2.373461e-02	ci right 2.683483e-02	k: 1010	n:40000
Cons ci ratio: 2.611784e-01	ci left: 4.868911e-03	ci right 6.354248e-03	k: 223	n:40000
KS ci ratio: 9.084775e-02	ci left: 4.245096e-02	ci right 4.651550e-02	k: 1778	n:40000
DYRK1B   40000 perm   9 sec   (4404 perm/sec)   p_kst 4.445000e-02   p_cons 5.575000e-03   p_joint 2.525000e-02

Joint ci ratio: 1.280428e-01	ci left: 1.722067e-02	ci right 1.959571e-02	k: 919	n:50000
Cons ci ratio: 2.340263e-01	ci left: 4.927077e-03	ci right 6.251319e-03	k: 278	n:50000
KS ci ratio: 7.918738e-02	ci left: 4.486694e-02	ci right 4.858592e-02	k: 2335	n:50000
DYRK1B   50000 perm   12 sec   (4290 perm/sec)   p_kst 4.670000e-02   p_cons 5.560000e-03   p_joint 1.838000e-02

Joint ci ratio: 1.098471e-01	ci left: 1.964052e-02	ci right 2.193949e-02	k: 1246	n:60000
Cons ci ratio: 2.185477e-01	ci left: 4.750485e-03	ci right 5.931473e-03	k: 319	n:60000
KS ci ratio: 7.254898e-02	ci left: 4.471414e-02	ci right 4.809657e-02	k: 2783	n:60000
DYRK1B   60000 perm   14 sec   (4196 perm/sec)   p_kst 4.638333e-02   p_cons 5.316667e-03   p_joint 2.076667e-02

Joint ci ratio: 1.082162e-01	ci left: 1.740337e-02	ci right 1.940826e-02	k: 1287	n:70000
Cons ci ratio: 2.035270e-01	ci left: 4.734883e-03	ci right 5.821033e-03	k: 368	n:70000
KS ci ratio: 6.737428e-02	ci left: 4.457229e-02	ci right 4.769404e-02	k: 3228	n:70000
DYRK1B   70000 perm   17 sec   (4089 perm/sec)   p_kst 4.611429e-02   p_cons 5.257143e-03   p_joint 1.838571e-02

Joint ci ratio: 1.057046e-01	ci left: 1.600593e-02	ci right 1.780435e-02	k: 1351	n:80000
Cons ci ratio: 1.945330e-01	ci left: 4.558686e-03	ci right 5.552729e-03	k: 403	n:80000
KS ci ratio: 6.288269e-02	ci left: 4.486641e-02	ci right 4.779160e-02	k: 3705	n:80000
DYRK1B   80000 perm   20 sec   (4008 perm/sec)   p_kst 4.631250e-02   p_cons 5.037500e-03   p_joint 1.688750e-02

Joint ci ratio: 9.537924e-02	ci left: 1.754283e-02	ci right 1.931063e-02	k: 1657	n:90000
Cons ci ratio: 1.833063e-01	ci left: 4.592056e-03	ci right 5.529170e-03	k: 454	n:90000
KS ci ratio: 5.928827e-02	ci left: 4.494719e-02	ci right 4.770437e-02	k: 4168	n:90000
DYRK1B   90000 perm   23 sec   (3931 perm/sec)   p_kst 4.631111e-02   p_cons 5.044444e-03   p_joint 1.841111e-02

Joint ci ratio: 7.001921e-02	ci left: 2.932488e-02	ci right 3.146247e-02	k: 3038	n:100000
Cons ci ratio: 1.904186e-01	ci left: 3.818134e-03	ci right 4.631036e-03	k: 421	n:100000
KS ci ratio: 5.612031e-02	ci left: 4.521296e-02	ci right 4.783342e-02	k: 4651	n:100000
DYRK1B   100000 perm   26 sec   (3863 perm/sec)   p_kst 4.651000e-02   p_cons 4.210000e-03   p_joint 3.038000e-02

Joint ci ratio: 7.414334e-02	ci left: 2.386220e-02	ci right 2.570843e-02	k: 2725	n:110000
Cons ci ratio: 1.819907e-01	ci left: 3.817722e-03	ci right 4.590596e-03	k: 461	n:110000
KS ci ratio: 5.334593e-02	ci left: 4.554132e-02	ci right 4.804629e-02	k: 5146	n:110000
DYRK1B   110000 perm   29 sec   (3796 perm/sec)   p_kst 4.678182e-02   p_cons 4.190909e-03   p_joint 2.477273e-02

Joint ci ratio: 7.560993e-02	ci left: 2.107932e-02	ci right 2.274389e-02	k: 2628	n:120000
Cons ci ratio: 1.730403e-01	ci left: 3.889790e-03	ci right 4.634481e-03	k: 510	n:120000
KS ci ratio: 5.091292e-02	ci left: 4.587521e-02	ci right 4.828007e-02	k: 5648	n:120000
DYRK1B   120000 perm   32 sec   (3732 perm/sec)   p_kst 4.706667e-02   p_cons 4.250000e-03   p_joint 2.190000e-02

Joint ci ratio: 7.290694e-02	ci left: 2.096013e-02	ci right 2.255361e-02	k: 2827	n:130000
Cons ci ratio: 1.660385e-01	ci left: 3.914683e-03	ci right 4.630784e-03	k: 554	n:130000
KS ci ratio: 4.899438e-02	ci left: 4.577978e-02	ci right 4.808664e-02	k: 6100	n:130000
DYRK1B   130000 perm   35 sec   (3672 perm/sec)   p_kst 4.692308e-02   p_cons 4.261538e-03   p_joint 2.174615e-02

Joint ci ratio: 7.048637e-02	ci left: 2.085187e-02	ci right 2.238232e-02	k: 3025	n:140000
Cons ci ratio: 1.602267e-01	ci left: 3.915966e-03	ci right 4.604815e-03	k: 595	n:140000
KS ci ratio: 4.735341e-02	ci left: 4.555821e-02	ci right 4.777490e-02	k: 6532	n:140000
DYRK1B   140000 perm   39 sec   (3613 perm/sec)   p_kst 4.665714e-02   p_cons 4.250000e-03   p_joint 2.160714e-02

Joint ci ratio: 6.872887e-02	ci left: 2.049661e-02	ci right 2.196198e-02	k: 3183	n:150000
Cons ci ratio: 1.538974e-01	ci left: 3.975147e-03	ci right 4.644236e-03	k: 645	n:150000
KS ci ratio: 4.581522e-02	ci left: 4.546623e-02	ci right 4.760468e-02	k: 6979	n:150000
DYRK1B   150000 perm   42 sec   (3555 perm/sec)   p_kst 4.652667e-02   p_cons 4.300000e-03   p_joint 2.122000e-02

Joint ci ratio: 8.913438e-02	ci left: 1.141108e-02	ci right 1.248172e-02	k: 1910	n:160000
Cons ci ratio: 1.334669e-01	ci left: 5.004467e-03	ci right 5.726135e-03	k: 857	n:160000
KS ci ratio: 4.444604e-02	ci left: 4.533112e-02	ci right 4.739786e-02	k: 7417	n:160000
DYRK1B   160000 perm   46 sec   (3501 perm/sec)   p_kst 4.635625e-02   p_cons 5.356250e-03   p_joint 1.193750e-02

Joint ci ratio: 7.995803e-02	ci left: 1.338342e-02	ci right 1.450383e-02	k: 2369	n:170000
Cons ci ratio: 1.294551e-01	ci left: 5.017290e-03	ci right 5.717388e-03	k: 911	n:170000
KS ci ratio: 4.325622e-02	ci left: 4.508468e-02	ci right 4.708378e-02	k: 7833	n:170000
DYRK1B   170000 perm   49 sec   (3448 perm/sec)   p_kst 4.607647e-02   p_cons 5.358824e-03   p_joint 1.393529e-02

Joint ci ratio: 8.068220e-02	ci left: 1.242189e-02	ci right 1.347166e-02	k: 2329	n:180000
Cons ci ratio: 1.259815e-01	ci left: 5.012832e-03	ci right 5.692137e-03	k: 962	n:180000
KS ci ratio: 4.198664e-02	ci left: 4.521828e-02	ci right 4.716303e-02	k: 8313	n:180000
DYRK1B   180000 perm   53 sec   (3393 perm/sec)   p_kst 4.618333e-02   p_cons 5.344444e-03   p_joint 1.293889e-02

Joint ci ratio: 7.228537e-02	ci left: 1.469083e-02	ci right 1.579772e-02	k: 2895	n:190000
Cons ci ratio: 1.221691e-01	ci left: 5.060095e-03	ci right 5.723554e-03	k: 1023	n:190000
KS ci ratio: 4.108543e-02	ci left: 4.478093e-02	ci right 4.666454e-02	k: 8686	n:190000
DYRK1B   190000 perm   57 sec   (3344 perm/sec)   p_kst 4.571579e-02   p_cons 5.384211e-03   p_joint 1.523684e-02

Joint ci ratio: 7.575843e-02	ci left: 1.270928e-02	ci right 1.371490e-02	k: 2641	n:200000
Cons ci ratio: 1.188484e-01	ci left: 5.088354e-03	ci right 5.736109e-03	k: 1081	n:200000
KS ci ratio: 4.002268e-02	ci left: 4.485323e-02	ci right 4.668996e-02	k: 9153	n:200000
DYRK1B   200000 perm   61 sec   (3296 perm/sec)   p_kst 4.576500e-02   p_cons 5.405000e-03   p_joint 1.320500e-02

Joint ci ratio: 7.214942e-02	ci left: 1.336151e-02	ci right 1.436626e-02	k: 2910	n:210000
Cons ci ratio: 1.159380e-01	ci left: 5.100267e-03	ci right 5.732550e-03	k: 1136	n:210000
KS ci ratio: 3.902560e-02	ci left: 4.494752e-02	ci right 4.674123e-02	k: 9626	n:210000
DYRK1B   210000 perm   65 sec   (3249 perm/sec)   p_kst 4.583810e-02   p_cons 5.409524e-03   p_joint 1.385714e-02

Joint ci ratio: 6.421854e-02	ci left: 1.611942e-02	ci right 1.719337e-02	k: 3663	n:220000
Cons ci ratio: 1.132315e-01	ci left: 5.111273e-03	ci right 5.729140e-03	k: 1191	n:220000
KS ci ratio: 3.815696e-02	ci left: 4.490314e-02	ci right 4.665431e-02	k: 10070	n:220000
DYRK1B   220000 perm   69 sec   (3203 perm/sec)   p_kst 4.577273e-02   p_cons 5.413636e-03   p_joint 1.665000e-02

Joint ci ratio: 6.519807e-02	ci left: 1.496915e-02	ci right 1.598225e-02	k: 3558	n:230000
Cons ci ratio: 1.102624e-01	ci left: 5.163762e-03	ci right 5.770543e-03	k: 1256	n:230000
KS ci ratio: 3.729556e-02	ci left: 4.497506e-02	ci right 4.668859e-02	k: 10540	n:230000
DYRK1B   230000 perm   73 sec   (3160 perm/sec)   p_kst 4.582609e-02   p_cons 5.460870e-03   p_joint 1.546957e-02

Joint ci ratio: 5.944582e-02	ci left: 1.726654e-02	ci right 1.832849e-02	k: 4270	n:240000
Cons ci ratio: 1.083843e-01	ci left: 5.126920e-03	ci right 5.718454e-03	k: 1300	n:240000
KS ci ratio: 3.663317e-02	ci left: 4.470270e-02	ci right 4.637496e-02	k: 10928	n:240000
DYRK1B   240000 perm   77 sec   (3107 perm/sec)   p_kst 4.553333e-02   p_cons 5.416667e-03   p_joint 1.779167e-02

Joint ci ratio: 5.749255e-02	ci left: 1.773086e-02	ci right 1.878435e-02	k: 4563	n:250000
Cons ci ratio: 1.055777e-01	ci left: 5.194361e-03	ci right 5.777194e-03	k: 1370	n:250000
KS ci ratio: 3.587220e-02	ci left: 4.476965e-02	ci right 4.640891e-02	k: 11396	n:250000
DYRK1B   250000 perm   82 sec   (3060 perm/sec)   p_kst 4.558400e-02   p_cons 5.480000e-03   p_joint 1.825200e-02

Joint ci ratio: 5.628893e-02	ci left: 1.779584e-02	ci right 1.883033e-02	k: 4760	n:260000
Cons ci ratio: 1.034123e-01	ci left: 5.211827e-03	ci right 5.783897e-03	k: 1428	n:260000
KS ci ratio: 3.514900e-02	ci left: 4.485085e-02	ci right 4.645930e-02	k: 11869	n:260000
DYRK1B   260000 perm   86 sec   (3017 perm/sec)   p_kst 4.565000e-02   p_cons 5.492308e-03   p_joint 1.830769e-02

Joint ci ratio: 5.536298e-02	ci left: 1.772469e-02	ci right 1.873755e-02	k: 4921	n:270000
Cons ci ratio: 1.012381e-01	ci left: 5.242553e-03	ci right 5.805178e-03	k: 1490	n:270000
KS ci ratio: 3.452210e-02	ci left: 4.479043e-02	ci right 4.636749e-02	k: 12305	n:270000
DYRK1B   270000 perm   91 sec   (2976 perm/sec)   p_kst 4.557407e-02   p_cons 5.518519e-03   p_joint 1.822593e-02

Joint ci ratio: 5.220010e-02	ci left: 1.922724e-02	ci right 2.026131e-02	k: 5527	n:280000
Cons ci ratio: 9.919547e-02	ci left: 5.271202e-03	ci right 5.824823e-03	k: 1552	n:280000
KS ci ratio: 3.385666e-02	ci left: 4.491523e-02	ci right 4.646562e-02	k: 12792	n:280000
DYRK1B   280000 perm   95 sec   (2936 perm/sec)   p_kst 4.568571e-02   p_cons 5.542857e-03   p_joint 1.973929e-02

Outputting figure to mutsig2_images.part000000000054/DYRK1B.4_1930_280000_0.045686_0.0055429_0.019739.png
                gene_name: DYRK1B
               theta_stop: 0.099 
                    nperm: 280000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.0055 
      ci_cons_bounds_left: 0.0053 
     ci_cons_bounds_right: 0.0058 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 39 percent done.
DYRK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.467656e-02	ci left: 8.705050e-01	ci right 8.834745e-01	k: 8771	n:10000
KS ci ratio: 2.758983e-02	ci left: 6.593767e-01	ci right 6.779249e-01	k: 6687	n:10000
DYRK4   10000 perm   2 sec   (5648 perm/sec)   p_kst 6.687000e-01   p_cons 8.771000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/DYRK4.4_1607_10000_0.6687_0.8771_1.png
                gene_name: DYRK4
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
DZIP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.996751e-02	ci left: 6.215560e-01	ci right 6.405676e-01	k: 6311	n:10000
KS ci ratio: 1.833616e-02	ci left: 8.128353e-01	ci right 8.279776e-01	k: 8205	n:10000
DZIP1L   10000 perm   2 sec   (4953 perm/sec)   p_kst 8.205000e-01   p_cons 6.311000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/DZIP1L.4_2373_10000_0.8205_0.6311_1.png
                gene_name: DZIP1L
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
EBAG9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.005180e-01	ci left: 1.253257e-01	ci right 1.386894e-01	k: 1319	n:10000
Cons ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
KS ci ratio: 4.077787e-02	ci left: 4.703648e-01	ci right 4.900467e-01	k: 4802	n:10000
EBAG9   10000 perm   2 sec   (6299 perm/sec)   p_kst 4.802000e-01   p_cons 4.130000e-02   p_joint 1.319000e-01

Joint ci ratio: 7.408212e-02	ci left: 1.182322e-01	ci right 1.273777e-01	k: 2455	n:20000
Cons ci ratio: 1.357013e-01	ci left: 3.732625e-02	ci right 4.280850e-02	k: 800	n:20000
KS ci ratio: 2.905989e-02	ci left: 4.694071e-01	ci right 4.832998e-01	k: 9527	n:20000
EBAG9   20000 perm   4 sec   (5352 perm/sec)   p_kst 4.763500e-01   p_cons 4.000000e-02   p_joint 1.227500e-01

Joint ci ratio: 6.057253e-02	ci left: 1.187771e-01	ci right 1.262295e-01	k: 3674	n:30000
Cons ci ratio: 1.079984e-01	ci left: 3.979041e-02	ci right 4.436547e-02	k: 1261	n:30000
KS ci ratio: 2.365276e-02	ci left: 4.722666e-01	ci right 4.836043e-01	k: 14338	n:30000
EBAG9   30000 perm   6 sec   (5151 perm/sec)   p_kst 4.779333e-01   p_cons 4.203333e-02   p_joint 1.224667e-01

Joint ci ratio: 4.861816e-02	ci left: 1.363906e-01	ci right 1.432118e-01	k: 5591	n:40000
Cons ci ratio: 9.297355e-02	ci left: 4.056833e-02	ci right 4.454842e-02	k: 1701	n:40000
KS ci ratio: 2.038829e-02	ci left: 4.753680e-01	ci right 4.851849e-01	k: 19211	n:40000
EBAG9   40000 perm   8 sec   (4991 perm/sec)   p_kst 4.802750e-01   p_cons 4.252500e-02   p_joint 1.397750e-01

Outputting figure to mutsig2_images.part000000000054/EBAG9.4_666_40000_0.48028_0.042525_0.13978.png
                gene_name: EBAG9
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 45 percent done.
EBF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.331236e-02	ci left: 4.404146e-01	ci right 4.600144e-01	k: 4502	n:10000
Cons ci ratio: 4.768235e-02	ci left: 3.935649e-01	ci right 4.128915e-01	k: 4032	n:10000
KS ci ratio: 5.454299e-02	ci left: 3.312097e-01	ci right 3.498832e-01	k: 3405	n:10000
EBF2   10000 perm   2 sec   (5465 perm/sec)   p_kst 3.405000e-01   p_cons 4.032000e-01   p_joint 4.502000e-01

Outputting figure to mutsig2_images.part000000000054/EBF2.4_1792_10000_0.3405_0.4032_0.4502.png
                gene_name: EBF2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 47 percent done.
ECM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.735752e-02	ci left: 8.286969e-01	ci right 8.433068e-01	k: 8361	n:10000
KS ci ratio: 1.343746e-02	ci left: 8.887237e-01	ci right 9.008452e-01	k: 8949	n:10000
ECM2   10000 perm   2 sec   (4920 perm/sec)   p_kst 8.949000e-01   p_cons 8.361000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/ECM2.4_2136_10000_0.8949_0.8361_1.png
                gene_name: ECM2
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
EDEM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.390156e-02	ci left: 1.413875e-01	ci right 1.554180e-01	k: 1483	n:10000
Cons ci ratio: 1.661901e-01	ci left: 4.830553e-02	ci right 5.715732e-02	k: 526	n:10000
KS ci ratio: 5.787322e-02	ci left: 3.053055e-01	ci right 3.236027e-01	k: 3144	n:10000
EDEM1   10000 perm   2 sec   (6006 perm/sec)   p_kst 3.144000e-01   p_cons 5.260000e-02   p_joint 1.483000e-01

Joint ci ratio: 5.715669e-02	ci left: 1.849296e-01	ci right 1.958606e-01	k: 3807	n:20000
Cons ci ratio: 1.225717e-01	ci left: 4.566069e-02	ci right 5.167140e-02	k: 972	n:20000
KS ci ratio: 4.099392e-02	ci left: 3.072719e-01	ci right 3.201823e-01	k: 6274	n:20000
EDEM1   20000 perm   4 sec   (5242 perm/sec)   p_kst 3.137000e-01   p_cons 4.860000e-02   p_joint 1.903500e-01

Joint ci ratio: 4.292742e-02	ci left: 2.128095e-01	ci right 2.221786e-01	k: 6524	n:30000
Cons ci ratio: 1.002789e-01	ci left: 4.603120e-02	ci right 5.092338e-02	k: 1453	n:30000
KS ci ratio: 3.391833e-02	ci left: 3.028111e-01	ci right 3.132927e-01	k: 9241	n:30000
EDEM1   30000 perm   6 sec   (5001 perm/sec)   p_kst 3.080333e-01   p_cons 4.843333e-02   p_joint 2.174667e-01

Joint ci ratio: 4.774809e-02	ci left: 1.407461e-01	ci right 1.476557e-01	k: 5767	n:40000
Cons ci ratio: 8.606954e-02	ci left: 4.717419e-02	ci right 5.144154e-02	k: 1971	n:40000
KS ci ratio: 2.928939e-02	ci left: 3.047471e-01	ci right 3.138307e-01	k: 12371	n:40000
EDEM1   40000 perm   8 sec   (4832 perm/sec)   p_kst 3.092750e-01   p_cons 4.927500e-02   p_joint 1.441750e-01

Outputting figure to mutsig2_images.part000000000054/EDEM1.4_2022_40000_0.30928_0.049275_0.14417.png
                gene_name: EDEM1
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 51 percent done.
EDEM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.023687e-02	ci left: 2.884508e-01	ci right 3.064673e-01	k: 2974	n:10000
KS ci ratio: 2.043026e-02	ci left: 7.782343e-01	ci right 7.943986e-01	k: 7864	n:10000
EDEM2   10000 perm   2 sec   (5406 perm/sec)   p_kst 7.864000e-01   p_cons 2.974000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/EDEM2.4_1781_10000_0.7864_0.2974_1.png
                gene_name: EDEM2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
EDNRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.855114e-02	ci left: 3.003467e-01	ci right 3.185644e-01	k: 3094	n:10000
Cons ci ratio: 1.266772e-02	ci left: 8.995979e-01	ci right 9.111647e-01	k: 9055	n:10000
KS ci ratio: 7.166236e-02	ci left: 2.219788e-01	ci right 2.385786e-01	k: 2302	n:10000
EDNRA   10000 perm   2 sec   (5248 perm/sec)   p_kst 2.302000e-01   p_cons 9.055000e-01   p_joint 3.094000e-01

Outputting figure to mutsig2_images.part000000000054/EDNRA.4_1312_10000_0.2302_0.9055_0.3094.png
                gene_name: EDNRA
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 55 percent done.
EAPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.110358e-02	ci left: 7.669899e-01	ci right 7.834495e-01	k: 7753	n:10000
Cons ci ratio: 4.029101e-02	ci left: 4.763591e-01	ci right 4.960489e-01	k: 4862	n:10000
KS ci ratio: 4.035556e-02	ci left: 4.755598e-01	ci right 4.952487e-01	k: 4854	n:10000
EAPP   10000 perm   2 sec   (6518 perm/sec)   p_kst 4.854000e-01   p_cons 4.862000e-01   p_joint 7.753000e-01

Outputting figure to mutsig2_images.part000000000054/EAPP.3_882_10000_0.4854_0.4862_0.7753.png
                gene_name: EAPP
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 57 percent done.
EBLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
Cons ci ratio: 1.264263e-01	ci left: 8.212963e-02	ci right 9.331191e-02	k: 876	n:10000
KS ci ratio: 1.726883e-02	ci left: 8.301215e-01	ci right 8.446814e-01	k: 8375	n:10000
EBLN2   10000 perm   2 sec   (6200 perm/sec)   p_kst 8.375000e-01   p_cons 8.760000e-02   p_joint 5.464000e-01

Joint ci ratio: 5.170248e-02	ci left: 2.174448e-01	ci right 2.290358e-01	k: 4464	n:20000
Cons ci ratio: 1.042709e-01	ci left: 6.254854e-02	ci right 6.947828e-02	k: 1319	n:20000
KS ci ratio: 1.212274e-02	ci left: 8.342879e-01	ci right 8.445133e-01	k: 16789	n:20000
EBLN2   20000 perm   4 sec   (5412 perm/sec)   p_kst 8.394500e-01   p_cons 6.595000e-02   p_joint 2.232000e-01

Joint ci ratio: 2.081481e-02	ci left: 5.360747e-01	ci right 5.473839e-01	k: 16252	n:30000
Cons ci ratio: 7.288801e-02	ci left: 8.471927e-02	ci right 9.116079e-02	k: 2637	n:30000
KS ci ratio: 9.924310e-03	ci left: 8.345222e-01	ci right 8.428788e-01	k: 25162	n:30000
EBLN2   30000 perm   6 sec   (5133 perm/sec)   p_kst 8.387333e-01   p_cons 8.790000e-02   p_joint 5.417333e-01

Outputting figure to mutsig2_images.part000000000054/EBLN2.3_823_30000_0.83873_0.0879_0.54173.png
                gene_name: EBLN2
               theta_stop: 0.073 
                    nperm: 30000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 59 percent done.
EBNA1BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.962867e-02	ci left: 3.745520e-01	ci right 3.937155e-01	k: 3841	n:10000
Cons ci ratio: 2.137588e-02	ci left: 7.624337e-01	ci right 7.790083e-01	k: 7708	n:10000
KS ci ratio: 7.550600e-02	ci left: 2.042211e-01	ci right 2.203469e-01	k: 2122	n:10000
EBNA1BP2   10000 perm   2 sec   (5838 perm/sec)   p_kst 2.122000e-01   p_cons 7.708000e-01   p_joint 3.841000e-01

Outputting figure to mutsig2_images.part000000000054/EBNA1BP2.3_1126_10000_0.2122_0.7708_0.3841.png
                gene_name: EBNA1BP2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 61 percent done.
ECD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.896750e-02	ci left: 4.930507e-01	ci right 5.127476e-01	k: 5029	n:10000
Cons ci ratio: 1.407835e-02	ci left: 8.794036e-01	ci right 8.919707e-01	k: 8858	n:10000
KS ci ratio: 5.885386e-02	ci left: 2.981652e-01	ci right 3.163472e-01	k: 3072	n:10000
ECD   10000 perm   2 sec   (5258 perm/sec)   p_kst 3.072000e-01   p_cons 8.858000e-01   p_joint 5.029000e-01

Outputting figure to mutsig2_images.part000000000054/ECD.3_2090_10000_0.3072_0.8858_0.5029.png
                gene_name: ECD
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 63 percent done.
ECHDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.714643e-02	ci left: 1.972229e-01	ci right 2.131492e-01	k: 2051	n:10000
Cons ci ratio: 1.302908e-01	ci left: 7.756782e-02	ci right 8.847654e-02	k: 829	n:10000
KS ci ratio: 1.143038e-02	ci left: 9.162609e-01	ci right 9.268919e-01	k: 9217	n:10000
ECHDC1   10000 perm   2 sec   (6299 perm/sec)   p_kst 9.217000e-01   p_cons 8.290000e-02   p_joint 2.051000e-01

Joint ci ratio: 2.887705e-02	ci left: 4.725547e-01	ci right 4.864513e-01	k: 9590	n:20000
Cons ci ratio: 8.760394e-02	ci left: 8.699967e-02	ci right 9.501970e-02	k: 1819	n:20000
KS ci ratio: 8.211510e-03	ci left: 9.154900e-01	ci right 9.230876e-01	k: 18387	n:20000
ECHDC1   20000 perm   4 sec   (5458 perm/sec)   p_kst 9.193500e-01   p_cons 9.095000e-02   p_joint 4.795000e-01

Outputting figure to mutsig2_images.part000000000054/ECHDC1.3_948_20000_0.91935_0.09095_0.4795.png
                gene_name: ECHDC1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 65 percent done.
ECHDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.972766e-03	ci left: 9.742942e-01	ci right 9.802233e-01	k: 9774	n:10000
Cons ci ratio: 1.515566e-02	ci left: 8.632507e-01	ci right 8.765330e-01	k: 8700	n:10000
KS ci ratio: 1.506850e-02	ci left: 8.645785e-01	ci right 8.778045e-01	k: 8713	n:10000
ECHDC2   10000 perm   2 sec   (6326 perm/sec)   p_kst 8.713000e-01   p_cons 8.700000e-01   p_joint 9.774000e-01

Outputting figure to mutsig2_images.part000000000054/ECHDC2.3_822_10000_0.8713_0.87_0.9774.png
                gene_name: ECHDC2
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 67 percent done.
ECSIT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.073150e-02	ci left: 6.096996e-01	ci right 6.288309e-01	k: 6193	n:10000
Cons ci ratio: 2.047888e-02	ci left: 7.774236e-01	ci right 7.936097e-01	k: 7856	n:10000
KS ci ratio: 6.929979e-02	ci left: 2.339280e-01	ci right 2.508223e-01	k: 2423	n:10000
ECSIT   10000 perm   2 sec   (6103 perm/sec)   p_kst 2.423000e-01   p_cons 7.856000e-01   p_joint 6.193000e-01

Outputting figure to mutsig2_images.part000000000054/ECSIT.3_1324_10000_0.2423_0.7856_0.6193.png
                gene_name: ECSIT
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 69 percent done.
EDAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.803927e-02	ci left: 6.521295e-01	ci right 6.707764e-01	k: 6615	n:10000
Cons ci ratio: 2.510024e-02	ci left: 7.001892e-01	ci right 7.180889e-01	k: 7092	n:10000
KS ci ratio: 3.841808e-02	ci left: 5.001504e-01	ci right 5.198437e-01	k: 5100	n:10000
EDAR   10000 perm   2 sec   (5745 perm/sec)   p_kst 5.100000e-01   p_cons 7.092000e-01   p_joint 6.615000e-01

Outputting figure to mutsig2_images.part000000000054/EDAR.3_1391_10000_0.51_0.7092_0.6615.png
                gene_name: EDAR
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 71 percent done.
EDC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.138976e-01	ci left: 9.983694e-02	ci right 1.119937e-01	k: 1058	n:10000
Cons ci ratio: 1.237387e-01	ci left: 8.552985e-02	ci right 9.690958e-02	k: 911	n:10000
KS ci ratio: 6.914919e-02	ci left: 2.347184e-01	ci right 2.516315e-01	k: 2431	n:10000
EDC4   10000 perm   2 sec   (4321 perm/sec)   p_kst 2.431000e-01   p_cons 9.110000e-02   p_joint 1.058000e-01

Joint ci ratio: 9.114699e-02	ci left: 8.077881e-02	ci right 8.854244e-02	k: 1692	n:20000
Cons ci ratio: 8.786976e-02	ci left: 8.650961e-02	ci right 9.450990e-02	k: 1809	n:20000
KS ci ratio: 4.956291e-02	ci left: 2.323097e-01	ci right 2.441665e-01	k: 4764	n:20000
EDC4   20000 perm   5 sec   (3901 perm/sec)   p_kst 2.382000e-01   p_cons 9.045000e-02   p_joint 8.460000e-02

Outputting figure to mutsig2_images.part000000000054/EDC4.3_4322_20000_0.2382_0.09045_0.0846.png
                gene_name: EDC4
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.089 

Current progress: 73 percent done.
EDEM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.138797e-02	ci left: 7.622312e-01	ci right 7.788109e-01	k: 7706	n:10000
Cons ci ratio: 4.460369e-02	ci left: 4.259515e-01	ci right 4.454860e-01	k: 4357	n:10000
KS ci ratio: 1.759750e-02	ci left: 8.248311e-01	ci right 8.395749e-01	k: 8323	n:10000
EDEM3   10000 perm   2 sec   (4983 perm/sec)   p_kst 8.323000e-01   p_cons 4.357000e-01   p_joint 7.706000e-01

Outputting figure to mutsig2_images.part000000000054/EDEM3.3_2879_10000_0.8323_0.4357_0.7706.png
                gene_name: EDEM3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 75 percent done.
EDIL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.097034e-02	ci left: 7.692178e-01	ci right 7.856203e-01	k: 7775	n:10000
Cons ci ratio: 4.656160e-02	ci left: 4.050199e-01	ci right 4.244298e-01	k: 4147	n:10000
KS ci ratio: 3.669516e-02	ci left: 5.230630e-01	ci right 5.427178e-01	k: 5329	n:10000
EDIL3   10000 perm   2 sec   (5983 perm/sec)   p_kst 5.329000e-01   p_cons 4.147000e-01   p_joint 7.775000e-01

Outputting figure to mutsig2_images.part000000000054/EDIL3.3_1487_10000_0.5329_0.4147_0.7775.png
                gene_name: EDIL3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 76 percent done.
EEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.561562e-02	ci left: 4.149851e-01	ci right 4.344588e-01	k: 4247	n:10000
KS ci ratio: 2.544131e-02	ci left: 6.945411e-01	ci right 7.125402e-01	k: 7036	n:10000
EEF2   10000 perm   2 sec   (5444 perm/sec)   p_kst 7.036000e-01   p_cons 4.247000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/EEF2.3_2637_10000_0.7036_0.4247_1.png
                gene_name: EEF2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
EEFSEC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.444600e-02	ci left: 3.320042e-01	ci right 3.506883e-01	k: 3413	n:10000
Cons ci ratio: 2.513066e-02	ci left: 6.996848e-01	ci right 7.175935e-01	k: 7087	n:10000
KS ci ratio: 7.728861e-02	ci left: 1.966317e-01	ci right 2.125408e-01	k: 2045	n:10000
EEFSEC   10000 perm   2 sec   (5397 perm/sec)   p_kst 2.045000e-01   p_cons 7.087000e-01   p_joint 3.413000e-01

Outputting figure to mutsig2_images.part000000000054/EEFSEC.3_1819_10000_0.2045_0.7087_0.3413.png
                gene_name: EEFSEC
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 80 percent done.
EEPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.782673e-02	ci left: 6.555515e-01	ci right 6.741524e-01	k: 6649	n:10000
Cons ci ratio: 7.831486e-03	ci left: 9.577516e-01	ci right 9.653765e-01	k: 9617	n:10000
KS ci ratio: 4.560629e-02	ci left: 4.150847e-01	ci right 4.345591e-01	k: 4248	n:10000
EEPD1   10000 perm   2 sec   (5901 perm/sec)   p_kst 4.248000e-01   p_cons 9.617000e-01   p_joint 6.649000e-01

Outputting figure to mutsig2_images.part000000000054/EEPD1.3_1738_10000_0.4248_0.9617_0.6649.png
                gene_name: EEPD1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 82 percent done.
DYNC1LI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.498109e-02	ci left: 8.659064e-01	ci right 8.790757e-01	k: 8726	n:10000
Cons ci ratio: 5.731428e-02	ci left: 3.094718e-01	ci right 3.278340e-01	k: 3186	n:10000
KS ci ratio: 3.728889e-02	ci left: 5.150563e-01	ci right 5.347292e-01	k: 5249	n:10000
DYNC1LI2   10000 perm   2 sec   (6463 perm/sec)   p_kst 5.249000e-01   p_cons 3.186000e-01   p_joint 8.726000e-01

Outputting figure to mutsig2_images.part000000000054/DYNC1LI2.2_1531_10000_0.5249_0.3186_0.8726.png
                gene_name: DYNC1LI2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 84 percent done.
E2F3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.122148e-02	ci left: 4.649712e-01	ci right 4.846435e-01	k: 4748	n:10000
Cons ci ratio: 6.996660e-02	ci left: 2.304707e-01	ci right 2.472817e-01	k: 2388	n:10000
KS ci ratio: 2.453543e-02	ci left: 7.095727e-01	ci right 7.272999e-01	k: 7185	n:10000
E2F3   10000 perm   2 sec   (6316 perm/sec)   p_kst 7.185000e-01   p_cons 2.388000e-01   p_joint 4.748000e-01

Outputting figure to mutsig2_images.part000000000054/E2F3.2_1426_10000_0.7185_0.2388_0.4748.png
                gene_name: E2F3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 86 percent done.
E2F5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.615064e-02	ci left: 6.828465e-01	ci right 7.010415e-01	k: 6920	n:10000
Cons ci ratio: 5.792695e-02	ci left: 3.049087e-01	ci right 3.231997e-01	k: 3140	n:10000
KS ci ratio: 4.725902e-02	ci left: 3.978474e-01	ci right 4.172065e-01	k: 4075	n:10000
E2F5   10000 perm   2 sec   (6414 perm/sec)   p_kst 4.075000e-01   p_cons 3.140000e-01   p_joint 6.920000e-01

Outputting figure to mutsig2_images.part000000000054/E2F5.2_1073_10000_0.4075_0.314_0.692.png
                gene_name: E2F5
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 88 percent done.
EBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.709323e-02	ci left: 6.674321e-01	ci right 6.858649e-01	k: 6767	n:10000
KS ci ratio: 2.708085e-02	ci left: 6.676335e-01	ci right 6.860634e-01	k: 6769	n:10000
EBP   10000 perm   2 sec   (6379 perm/sec)   p_kst 6.769000e-01   p_cons 6.767000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/EBP.2_709_10000_0.6769_0.6767_1.png
                gene_name: EBP
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
ECHS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.981570e-02	ci left: 1.527663e-01	ci right 1.672324e-01	k: 1599	n:10000
Cons ci ratio: 5.574205e-02	ci left: 3.215787e-01	ci right 3.401199e-01	k: 3308	n:10000
KS ci ratio: 9.412510e-02	ci left: 1.407993e-01	ci right 1.548065e-01	k: 1477	n:10000
ECHS1   10000 perm   1 sec   (6876 perm/sec)   p_kst 1.477000e-01   p_cons 3.308000e-01   p_joint 1.599000e-01

Outputting figure to mutsig2_images.part000000000054/ECHS1.2_905_10000_0.1477_0.3308_0.1599.png
                gene_name: ECHS1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 92 percent done.
EDA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.120649e-02	ci left: 7.652685e-01	ci right 7.817719e-01	k: 7736	n:10000
Cons ci ratio: 4.380558e-02	ci left: 4.348278e-01	ci right 4.544044e-01	k: 4446	n:10000
KS ci ratio: 2.378481e-02	ci left: 7.220913e-01	ci right 7.395740e-01	k: 7309	n:10000
EDA   10000 perm   2 sec   (6147 perm/sec)   p_kst 7.309000e-01   p_cons 4.446000e-01   p_joint 7.736000e-01

Outputting figure to mutsig2_images.part000000000054/EDA.2_1344_10000_0.7309_0.4446_0.7736.png
                gene_name: EDA
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 94 percent done.
EDA2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.277146e-02	ci left: 2.166492e-01	ci right 2.331114e-01	k: 2248	n:10000
Cons ci ratio: 3.166431e-02	ci left: 5.954396e-01	ci right 6.146991e-01	k: 6051	n:10000
KS ci ratio: 1.170113e-01	ci left: 9.496613e-02	ci right 1.068675e-01	k: 1008	n:10000
EDA2R   10000 perm   2 sec   (6644 perm/sec)   p_kst 1.008000e-01   p_cons 6.051000e-01   p_joint 2.248000e-01

Joint ci ratio: 3.290673e-02	ci left: 4.081591e-01	ci right 4.218656e-01	k: 8300	n:20000
Cons ci ratio: 2.239123e-02	ci left: 5.982854e-01	ci right 6.118840e-01	k: 12102	n:20000
KS ci ratio: 8.352586e-02	ci left: 9.504152e-02	ci right 1.033754e-01	k: 1983	n:20000
EDA2R   20000 perm   3 sec   (5737 perm/sec)   p_kst 9.915000e-02   p_cons 6.051000e-01   p_joint 4.150000e-01

Outputting figure to mutsig2_images.part000000000054/EDA2R.2_914_20000_0.09915_0.6051_0.415.png
                gene_name: EDA2R
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 96 percent done.
EED
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.092731e-02	ci left: 6.066862e-01	ci right 6.258460e-01	k: 6163	n:10000
KS ci ratio: 1.252558e-01	ci left: 8.358655e-02	ci right 9.485408e-02	k: 891	n:10000
EED   10000 perm   2 sec   (5954 perm/sec)   p_kst 8.910000e-02   p_cons 6.163000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 2.320577e-02	ci left: 5.810410e-01	ci right 5.947334e-01	k: 11758	n:20000
KS ci ratio: 9.073774e-02	ci left: 8.146427e-02	ci right 8.925677e-02	k: 1706	n:20000
EED   20000 perm   4 sec   (5326 perm/sec)   p_kst 8.530000e-02   p_cons 5.879000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000054/EED.2_1378_20000_0.0853_0.5879_1.png
                gene_name: EED
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
EEF1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.613456e-02	ci left: 3.185017e-01	ci right 3.369988e-01	k: 3277	n:10000
Cons ci ratio: 5.878481e-02	ci left: 2.986610e-01	ci right 3.168511e-01	k: 3077	n:10000
KS ci ratio: 1.449914e-02	ci left: 8.731632e-01	ci right 8.860148e-01	k: 8797	n:10000
EEF1A1   10000 perm   2 sec   (6573 perm/sec)   p_kst 8.797000e-01   p_cons 3.077000e-01   p_joint 3.277000e-01

Outputting figure to mutsig2_images.part000000000054/EEF1A1.2_1417_10000_0.8797_0.3077_0.3277.png
                gene_name: EEF1A1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000054
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 54 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 9893922: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000055> was used as the working directory.
Started at Sat Oct  6 00:06:05 2012
Results reported at Sat Oct  6 00:32:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000055.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000055.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 55  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000055.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1621.07 sec.
    Max Memory :      3567 MB
    Max Swap   :      5948 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
55
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 55
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 55: processing genes 4869 - 4958
Calculating significance of each gene.
Using projection method.
4869	EFCAB1	8.213076e-02
4870	EFCAB2	6.223973e-02
4871	EFCAB3	3.833763e-01
4872	EFCAB4A	5.868849e-01
4873	EFCAB4B	3.455071e-01
4874	EFCAB5	5.461770e-01
4875	EFCAB6	8.115882e-01
4876	EFCAB7	1.761491e-01
4877	EFEMP1	5.084992e-01
4878	EFEMP2	8.449493e-01
4879	EFHA1	3.279715e-01
4880	EFHA2	2.058700e-01
4881	EFHB	2.918591e-01
4882	EFHC1	1.785167e-01
4883	EFHC2	2.607970e-01
4884	EFHD1	2.250793e-01
4885	EFHD2	5.078115e-01
4886	EFNA1	1
4887	EFNA2	1
4888	EFNA3	6.339850e-01
4889	EFNA4	6.677521e-01
4890	EFNA5	8.631356e-02
4891	EFNB1	4.511704e-01
4892	EFNB2	8.379252e-01
In gene EFNB3 the following bins exceed PROBCAP:
    COAD-AA-3851	categ 6	N = 1019    n = 1	mu =   3.95e-07
4893	EFNB3	9.136250e-02
4894	EFR3A	7.288295e-01
4895	EFS	1
4896	EFTUD1	1
4897	EFTUD2	1.806865e-01
4898	EGF	8.780262e-01
4899	EGFL6	2.073665e-01
4900	EGFL7	1
4901	EGFL8	7.234416e-01
4902	EGFLAM	5.435153e-01
4903	EGFR	2.306405e-01
4904	EGLN1	9.173955e-01
4905	EGLN2	6.312306e-01
4906	EGLN3	3.427271e-01
4907	EGR1	4.732564e-01
4908	EGR2	2.700471e-02
4909	EGR3	6.715746e-01
4910	EGR4	1
4911	EHBP1	3.010736e-01
4912	EHBP1L1	8.830111e-01
4913	EHD1	9.378987e-01
4914	EHD2	7.379296e-01
4915	EHD3	1.345388e-02
4916	EHD4	7.695029e-01
4917	EHF	1
4918	EHHADH	8.897388e-01
4919	EHMT1	9.972789e-01
4920	EHMT2	8.190616e-01
4921	EI24	8.418815e-01
4922	EID1	1
4923	EID2	7.002728e-01
4924	EID2B	1
4925	EID3	9.484596e-02
4926	EIF1	1
4927	EIF1AD	1
4928	EIF1AX	1
4929	EIF1AY	1
4930	EIF1B	1
4931	EIF2A	7.906100e-01
4932	EIF2AK1	4.449028e-02
4933	EIF2AK2	6.966108e-01
4934	EIF2AK3	9.601698e-01
4935	EIF2AK4	8.330045e-01
4936	EIF2B1	2.457164e-01
4937	EIF2B2	6.647097e-01
4938	EIF2B3	3.835644e-01
4939	EIF2B4	1
4940	EIF2B5	2.577592e-01
4941	EIF2C1	7.519233e-02
4942	EIF2C2	9.152014e-01
4943	EIF2C3	2.415989e-01
4944	EIF2C4	1.472239e-01
4945	EIF2S1	1
4946	EIF2S2	7.043303e-01
4947	EIF2S3	7.840585e-01
In gene EIF3A the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 4237    n = 1	mu =   7.59e-07
4948	EIF3A	1.951896e-01
4949	EIF3B	7.665368e-01
4950	EIF3D	3.266868e-01
4951	EIF3E	3.753402e-01
4952	EIF3F	3.338860e-01
4953	EIF3G	1
4954	EIF3H	6.999919e-01
4955	EIF3I	3.924343e-01
4956	EIF3J	2.136136e-02
4957	EIF3K	1
4958	EIF3L	7.987845e-01
Done

Running MutSig 2:
Scatter job 55: processing genes 4869 - 4958
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
EIF3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.019918e-01	ci left: 1.220977e-01	ci right 1.353194e-01	k: 1286	n:10000
Cons ci ratio: 1.879096e-01	ci left: 3.777051e-02	ci right 4.569926e-02	k: 416	n:10000
KS ci ratio: 3.913147e-02	ci left: 4.909512e-01	ci right 5.106484e-01	k: 5008	n:10000
EIF3A   10000 perm   3 sec   (3769 perm/sec)   p_kst 5.008000e-01   p_cons 4.160000e-02   p_joint 1.286000e-01

Joint ci ratio: 7.212038e-02	ci left: 1.240390e-01	ci right 1.333692e-01	k: 2573	n:20000
Cons ci ratio: 1.310813e-01	ci left: 3.998807e-02	ci right 4.564582e-02	k: 855	n:20000
KS ci ratio: 2.754797e-02	ci left: 4.960956e-01	ci right 5.100035e-01	k: 10061	n:20000
EIF3A   20000 perm   12 sec   (1612 perm/sec)   p_kst 5.030500e-01   p_cons 4.275000e-02   p_joint 1.286500e-01

Joint ci ratio: 5.709232e-02	ci left: 1.319093e-01	ci right 1.396947e-01	k: 4073	n:30000
Cons ci ratio: 1.084930e-01	ci left: 3.943328e-02	ci right 4.398935e-02	k: 1250	n:30000
KS ci ratio: 2.253916e-02	ci left: 4.963588e-01	ci right 5.077075e-01	k: 15061	n:30000
EIF3A   30000 perm   15 sec   (1936 perm/sec)   p_kst 5.020333e-01   p_cons 4.166667e-02   p_joint 1.357667e-01

Joint ci ratio: 4.281200e-02	ci left: 1.695524e-01	ci right 1.769951e-01	k: 6930	n:40000
Cons ci ratio: 8.595498e-02	ci left: 4.729664e-02	ci right 5.156908e-02	k: 1976	n:40000
KS ci ratio: 1.950834e-02	ci left: 4.974126e-01	ci right 5.072370e-01	k: 20093	n:40000
EIF3A   40000 perm   19 sec   (2153 perm/sec)   p_kst 5.023250e-01   p_cons 4.940000e-02   p_joint 1.732500e-01

Outputting figure to mutsig2_images.part000000000055/EIF3A.12_4237_40000_0.50233_0.0494_0.17325.png
                gene_name: EIF3A
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 2 percent done.
EGFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.498200e-01	ci left: 1.023265e-02	ci right 1.465817e-02	k: 123	n:10000
Cons ci ratio: 8.756181e-01	ci left: 1.144300e-03	ci right 2.965502e-03	k: 19	n:10000
KS ci ratio: 9.834058e-02	ci left: 1.303171e-01	ci right 1.438950e-01	k: 1370	n:10000
EGFR   10000 perm   2 sec   (4692 perm/sec)   p_kst 1.370000e-01   p_cons 1.900000e-03   p_joint 1.230000e-02

Joint ci ratio: 2.360574e-01	ci left: 1.199373e-02	ci right 1.524994e-02	k: 271	n:20000
Cons ci ratio: 6.115581e-01	ci left: 1.429202e-03	ci right 2.722447e-03	k: 40	n:20000
KS ci ratio: 6.987848e-02	ci left: 1.311789e-01	ci right 1.407272e-01	k: 2718	n:20000
EGFR   20000 perm   5 sec   (4099 perm/sec)   p_kst 1.359000e-01   p_cons 2.000000e-03   p_joint 1.355000e-02

Joint ci ratio: 2.145953e-01	ci left: 9.819042e-03	ci right 1.221040e-02	k: 329	n:30000
Cons ci ratio: 5.329553e-01	ci left: 1.323626e-03	ci right 2.310215e-03	k: 53	n:30000
KS ci ratio: 5.692268e-02	ci left: 1.326008e-01	ci right 1.404031e-01	k: 4094	n:30000
EGFR   30000 perm   8 sec   (3956 perm/sec)   p_kst 1.364667e-01   p_cons 1.766667e-03   p_joint 1.096667e-02

Joint ci ratio: 2.351379e-01	ci left: 6.088702e-03	ci right 7.734107e-03	k: 275	n:40000
Cons ci ratio: 4.462897e-01	ci left: 1.497267e-03	ci right 2.377565e-03	k: 76	n:40000
KS ci ratio: 4.952798e-02	ci left: 1.320363e-01	ci right 1.387667e-01	k: 5415	n:40000
EGFR   40000 perm   11 sec   (3717 perm/sec)   p_kst 1.353750e-01   p_cons 1.900000e-03   p_joint 6.875000e-03

Joint ci ratio: 2.147462e-01	ci left: 5.909029e-03	ci right 7.349151e-03	k: 330	n:50000
Cons ci ratio: 4.105495e-01	ci left: 1.447653e-03	ci right 2.212049e-03	k: 90	n:50000
KS ci ratio: 4.419737e-02	ci left: 1.329273e-01	ci right 1.389550e-01	k: 6796	n:50000
EGFR   50000 perm   14 sec   (3590 perm/sec)   p_kst 1.359200e-01   p_cons 1.800000e-03   p_joint 6.600000e-03

Joint ci ratio: 2.238855e-01	ci left: 4.514274e-03	ci right 5.667729e-03	k: 304	n:60000
Cons ci ratio: 3.859142e-01	ci left: 1.386353e-03	ci right 2.063309e-03	k: 102	n:60000
KS ci ratio: 4.048567e-02	ci left: 1.323907e-01	ci right 1.378780e-01	k: 8107	n:60000
EGFR   60000 perm   17 sec   (3476 perm/sec)   p_kst 1.351167e-01   p_cons 1.700000e-03   p_joint 5.066667e-03

Joint ci ratio: 2.221459e-01	ci left: 3.936682e-03	ci right 4.933656e-03	k: 309	n:70000
Cons ci ratio: 3.560530e-01	ci left: 1.421511e-03	ci right 2.049521e-03	k: 120	n:70000
KS ci ratio: 3.740782e-02	ci left: 1.330576e-01	ci right 1.381441e-01	k: 9491	n:70000
EGFR   70000 perm   20 sec   (3455 perm/sec)   p_kst 1.355857e-01   p_cons 1.714286e-03   p_joint 4.414286e-03

Joint ci ratio: 2.251431e-01	ci left: 3.350081e-03	ci right 4.211521e-03	k: 301	n:80000
Cons ci ratio: 3.334025e-01	ci left: 1.437945e-03	ci right 2.024139e-03	k: 137	n:80000
KS ci ratio: 3.490627e-02	ci left: 1.337929e-01	ci right 1.385585e-01	k: 10893	n:80000
EGFR   80000 perm   24 sec   (3400 perm/sec)   p_kst 1.361625e-01   p_cons 1.712500e-03   p_joint 3.762500e-03

Joint ci ratio: 1.645429e-01	ci left: 5.750859e-03	ci right 6.792460e-03	k: 563	n:90000
Cons ci ratio: 3.125753e-01	ci left: 1.472190e-03	ci right 2.027382e-03	k: 156	n:90000
KS ci ratio: 3.296408e-02	ci left: 1.335460e-01	ci right 1.380330e-01	k: 12220	n:90000
EGFR   90000 perm   27 sec   (3379 perm/sec)   p_kst 1.357778e-01   p_cons 1.733333e-03   p_joint 6.255556e-03

Joint ci ratio: 1.706323e-01	ci left: 4.801921e-03	ci right 5.707141e-03	k: 524	n:100000
Cons ci ratio: 3.003931e-01	ci left: 1.444974e-03	ci right 1.964614e-03	k: 169	n:100000
KS ci ratio: 3.100861e-02	ci left: 1.356493e-01	ci right 1.399317e-01	k: 13778	n:100000
EGFR   100000 perm   30 sec   (3302 perm/sec)   p_kst 1.377800e-01   p_cons 1.690000e-03   p_joint 5.240000e-03

Joint ci ratio: 1.676518e-01	ci left: 4.530743e-03	ci right 5.368413e-03	k: 543	n:110000
Cons ci ratio: 2.841397e-01	ci left: 1.482116e-03	ci right 1.981108e-03	k: 189	n:110000
KS ci ratio: 2.952366e-02	ci left: 1.360843e-01	ci right 1.401712e-01	k: 15193	n:110000
EGFR   110000 perm   34 sec   (3282 perm/sec)   p_kst 1.381182e-01   p_cons 1.718182e-03   p_joint 4.936364e-03

Joint ci ratio: 1.646727e-01	ci left: 4.312876e-03	ci right 5.094689e-03	k: 563	n:120000
Cons ci ratio: 2.671011e-01	ci left: 1.552563e-03	ci right 2.038688e-03	k: 214	n:120000
KS ci ratio: 2.832754e-02	ci left: 1.356638e-01	ci right 1.395703e-01	k: 16513	n:120000
EGFR   120000 perm   37 sec   (3242 perm/sec)   p_kst 1.376083e-01   p_cons 1.783333e-03   p_joint 4.691667e-03

Joint ci ratio: 1.760330e-01	ci left: 3.465451e-03	ci right 4.141595e-03	k: 493	n:130000
Cons ci ratio: 2.512320e-01	ci left: 1.634549e-03	ci right 2.111187e-03	k: 242	n:130000
KS ci ratio: 2.711016e-02	ci left: 1.366648e-01	ci right 1.404283e-01	k: 18010	n:130000
EGFR   130000 perm   40 sec   (3211 perm/sec)   p_kst 1.385385e-01   p_cons 1.861538e-03   p_joint 3.792308e-03

Joint ci ratio: 1.760571e-01	ci left: 3.217882e-03	ci right 3.845815e-03	k: 493	n:140000
Cons ci ratio: 2.428814e-01	ci left: 1.631708e-03	ci right 2.089319e-03	k: 259	n:140000
KS ci ratio: 2.613453e-02	ci left: 1.366377e-01	ci right 1.402630e-01	k: 19382	n:140000
EGFR   140000 perm   44 sec   (3180 perm/sec)   p_kst 1.384429e-01   p_cons 1.850000e-03   p_joint 3.521429e-03

Joint ci ratio: 1.748394e-01	ci left: 3.047950e-03	ci right 3.638172e-03	k: 500	n:150000
Cons ci ratio: 2.365987e-01	ci left: 1.610653e-03	ci right 2.048963e-03	k: 273	n:150000
KS ci ratio: 2.524096e-02	ci left: 1.367689e-01	ci right 1.402718e-01	k: 20777	n:150000
EGFR   150000 perm   48 sec   (3147 perm/sec)   p_kst 1.385133e-01   p_cons 1.820000e-03   p_joint 3.333333e-03

Joint ci ratio: 1.691923e-01	ci left: 3.060807e-03	ci right 3.632423e-03	k: 534	n:160000
Cons ci ratio: 2.280200e-01	ci left: 1.633603e-03	ci right 2.059773e-03	k: 294	n:160000
KS ci ratio: 2.443638e-02	ci left: 1.368544e-01	ci right 1.402462e-01	k: 22167	n:160000
EGFR   160000 perm   52 sec   (3100 perm/sec)   p_kst 1.385437e-01   p_cons 1.837500e-03   p_joint 3.337500e-03

Joint ci ratio: 1.296697e-01	ci left: 5.000212e-03	ci right 5.699173e-03	k: 908	n:170000
Cons ci ratio: 2.220787e-01	ci left: 1.626320e-03	ci right 2.038025e-03	k: 310	n:170000
KS ci ratio: 2.369598e-02	ci left: 1.370134e-01	ci right 1.403048e-01	k: 23571	n:170000
EGFR   170000 perm   55 sec   (3070 perm/sec)   p_kst 1.386529e-01   p_cons 1.823529e-03   p_joint 5.341176e-03

Joint ci ratio: 1.082019e-01	ci left: 6.847033e-03	ci right 7.635629e-03	k: 1302	n:180000
Cons ci ratio: 2.133354e-01	ci left: 1.672545e-03	ci right 2.077102e-03	k: 336	n:180000
KS ci ratio: 2.299658e-02	ci left: 1.373883e-01	ci right 1.405900e-01	k: 25017	n:180000
EGFR   180000 perm   59 sec   (3039 perm/sec)   p_kst 1.389833e-01   p_cons 1.866667e-03   p_joint 7.233333e-03

Joint ci ratio: 1.097163e-01	ci left: 6.307375e-03	ci right 7.044639e-03	k: 1267	n:190000
Cons ci ratio: 2.069826e-01	ci left: 1.689228e-03	ci right 2.084113e-03	k: 357	n:190000
KS ci ratio: 2.241078e-02	ci left: 1.371383e-01	ci right 1.402517e-01	k: 26351	n:190000
EGFR   190000 perm   63 sec   (3007 perm/sec)   p_kst 1.386895e-01   p_cons 1.878947e-03   p_joint 6.668421e-03

Joint ci ratio: 1.119786e-01	ci left: 5.748844e-03	ci right 6.435590e-03	k: 1217	n:200000
Cons ci ratio: 2.011655e-01	ci left: 1.704403e-03	ci right 2.090263e-03	k: 378	n:200000
KS ci ratio: 2.184742e-02	ci left: 1.371332e-01	ci right 1.401673e-01	k: 27729	n:200000
EGFR   200000 perm   67 sec   (2968 perm/sec)   p_kst 1.386450e-01   p_cons 1.890000e-03   p_joint 6.085000e-03

Joint ci ratio: 1.092326e-01	ci left: 5.762162e-03	ci right 6.432533e-03	k: 1279	n:210000
Cons ci ratio: 1.943577e-01	ci left: 1.745451e-03	ci right 2.125650e-03	k: 405	n:210000
KS ci ratio: 2.132579e-02	ci left: 1.371153e-01	ci right 1.400756e-01	k: 29104	n:210000
EGFR   210000 perm   72 sec   (2932 perm/sec)   p_kst 1.385905e-01   p_cons 1.928571e-03   p_joint 6.090476e-03

Joint ci ratio: 1.060844e-01	ci left: 5.840835e-03	ci right 6.499551e-03	k: 1356	n:220000
Cons ci ratio: 1.895175e-01	ci left: 1.756982e-03	ci right 2.129064e-03	k: 426	n:220000
KS ci ratio: 2.082159e-02	ci left: 1.373080e-01	ci right 1.402015e-01	k: 30525	n:220000
EGFR   220000 perm   76 sec   (2893 perm/sec)   p_kst 1.387500e-01   p_cons 1.936364e-03   p_joint 6.163636e-03

Joint ci ratio: 1.036307e-01	ci left: 5.862086e-03	ci right 6.506976e-03	k: 1421	n:230000
Cons ci ratio: 1.854369e-01	ci left: 1.759323e-03	ci right 2.122977e-03	k: 445	n:230000
KS ci ratio: 2.036412e-02	ci left: 1.373375e-01	ci right 1.401673e-01	k: 31912	n:230000
EGFR   230000 perm   80 sec   (2859 perm/sec)   p_kst 1.387478e-01   p_cons 1.934783e-03   p_joint 6.178261e-03

Joint ci ratio: 1.018580e-01	ci left: 5.820805e-03	ci right 6.449545e-03	k: 1471	n:240000
Cons ci ratio: 1.833960e-01	ci left: 1.725758e-03	ci right 2.078112e-03	k: 455	n:240000
KS ci ratio: 1.994180e-02	ci left: 1.372904e-01	ci right 1.400600e-01	k: 33281	n:240000
EGFR   240000 perm   85 sec   (2828 perm/sec)   p_kst 1.386708e-01   p_cons 1.895833e-03   p_joint 6.129167e-03

Joint ci ratio: 1.008083e-01	ci left: 5.708814e-03	ci right 6.318724e-03	k: 1502	n:250000
Cons ci ratio: 1.787505e-01	ci left: 1.748379e-03	ci right 2.095331e-03	k: 479	n:250000
KS ci ratio: 1.953685e-02	ci left: 1.373434e-01	ci right 1.400570e-01	k: 34674	n:250000
EGFR   250000 perm   89 sec   (2793 perm/sec)   p_kst 1.386960e-01   p_cons 1.916000e-03   p_joint 6.008000e-03

Joint ci ratio: 1.003510e-01	ci left: 5.541712e-03	ci right 6.130925e-03	k: 1516	n:260000
Cons ci ratio: 1.744410e-01	ci left: 1.769363e-03	ci right 2.111123e-03	k: 503	n:260000
KS ci ratio: 1.915037e-02	ci left: 1.374578e-01	ci right 1.401195e-01	k: 36084	n:260000
EGFR   260000 perm   94 sec   (2767 perm/sec)   p_kst 1.387846e-01   p_cons 1.934615e-03   p_joint 5.830769e-03

Joint ci ratio: 1.100438e-01	ci left: 4.420277e-03	ci right 4.938592e-03	k: 1262	n:270000
Cons ci ratio: 1.925094e-01	ci left: 1.385743e-03	ci right 1.684380e-03	k: 413	n:270000
KS ci ratio: 1.879555e-02	ci left: 1.374426e-01	ci right 1.400541e-01	k: 37461	n:270000
EGFR   270000 perm   99 sec   (2739 perm/sec)   p_kst 1.387444e-01   p_cons 1.529630e-03   p_joint 4.674074e-03

Joint ci ratio: 1.146085e-01	ci left: 3.922181e-03	ci right 4.402457e-03	k: 1164	n:280000
Cons ci ratio: 1.897797e-01	ci left: 1.377058e-03	ci right 1.669130e-03	k: 425	n:280000
KS ci ratio: 1.844240e-02	ci left: 1.376530e-01	ci right 1.402188e-01	k: 38901	n:280000
EGFR   280000 perm   103 sec   (2713 perm/sec)   p_kst 1.389321e-01   p_cons 1.517857e-03   p_joint 4.157143e-03

Joint ci ratio: 8.239335e-02	ci left: 7.425597e-03	ci right 8.067058e-03	k: 2245	n:290000
Cons ci ratio: 1.597341e-01	ci left: 1.906858e-03	ci right 2.241149e-03	k: 600	n:290000
KS ci ratio: 1.814030e-02	ci left: 1.374302e-01	ci right 1.399494e-01	k: 40219	n:290000
EGFR   290000 perm   108 sec   (2687 perm/sec)   p_kst 1.386862e-01   p_cons 2.068966e-03   p_joint 7.741379e-03

Joint ci ratio: 8.011754e-02	ci left: 7.599367e-03	ci right 8.236861e-03	k: 2374	n:300000
Cons ci ratio: 1.568881e-01	ci left: 1.913725e-03	ci right 2.242679e-03	k: 622	n:300000
KS ci ratio: 1.731593e-02	ci left: 1.446386e-01	ci right 1.471683e-01	k: 43770	n:300000
EGFR   300000 perm   113 sec   (2663 perm/sec)   p_kst 1.459000e-01   p_cons 2.073333e-03   p_joint 7.913333e-03

Joint ci ratio: 7.899609e-02	ci left: 7.569212e-03	ci right 8.194879e-03	k: 2442	n:310000
Cons ci ratio: 1.551561e-01	ci left: 1.895389e-03	ci right 2.217260e-03	k: 636	n:310000
KS ci ratio: 1.703172e-02	ci left: 1.446976e-01	ci right 1.471864e-01	k: 45241	n:310000
EGFR   310000 perm   117 sec   (2640 perm/sec)   p_kst 1.459387e-01   p_cons 2.051613e-03   p_joint 7.877419e-03

Joint ci ratio: 7.242408e-02	ci left: 8.743190e-03	ci right 9.403247e-03	k: 2902	n:320000
Cons ci ratio: 1.528931e-01	ci left: 1.893244e-03	ci right 2.209632e-03	k: 655	n:320000
KS ci ratio: 1.675475e-02	ci left: 1.448467e-01	ci right 1.472972e-01	k: 46742	n:320000
EGFR   320000 perm   123 sec   (2609 perm/sec)   p_kst 1.460687e-01   p_cons 2.046875e-03   p_joint 9.068750e-03

Joint ci ratio: 7.449389e-02	ci left: 8.011112e-03	ci right 8.633932e-03	k: 2745	n:330000
Cons ci ratio: 1.511758e-01	ci left: 1.879597e-03	ci right 2.189857e-03	k: 670	n:330000
KS ci ratio: 1.649928e-02	ci left: 1.448603e-01	ci right 1.472732e-01	k: 48201	n:330000
EGFR   330000 perm   128 sec   (2576 perm/sec)   p_kst 1.460636e-01   p_cons 2.030303e-03   p_joint 8.318182e-03

Joint ci ratio: 7.357680e-02	ci left: 7.974669e-03	ci right 8.586697e-03	k: 2814	n:340000
Cons ci ratio: 1.489720e-01	ci left: 1.880930e-03	ci right 2.186481e-03	k: 690	n:340000
KS ci ratio: 1.625018e-02	ci left: 1.449495e-01	ci right 1.473271e-01	k: 49686	n:340000
EGFR   340000 perm   133 sec   (2549 perm/sec)   p_kst 1.461353e-01   p_cons 2.029412e-03   p_joint 8.276471e-03

Joint ci ratio: 7.261663e-02	ci left: 7.957187e-03	ci right 8.559568e-03	k: 2889	n:350000
Cons ci ratio: 1.476968e-01	ci left: 1.860201e-03	ci right 2.159569e-03	k: 702	n:350000
KS ci ratio: 1.600890e-02	ci left: 1.450823e-01	ci right 1.474264e-01	k: 51188	n:350000
EGFR   350000 perm   139 sec   (2514 perm/sec)   p_kst 1.462514e-01   p_cons 2.005714e-03   p_joint 8.254286e-03

Joint ci ratio: 7.143844e-02	ci left: 7.998024e-03	ci right 8.593265e-03	k: 2985	n:360000
Cons ci ratio: 1.454383e-01	ci left: 1.867399e-03	ci right 2.162931e-03	k: 724	n:360000
KS ci ratio: 1.577369e-02	ci left: 1.452771e-01	ci right 1.475897e-01	k: 52715	n:360000
EGFR   360000 perm   145 sec   (2488 perm/sec)   p_kst 1.464306e-01   p_cons 2.011111e-03   p_joint 8.291667e-03

Joint ci ratio: 7.393325e-02	ci left: 7.261655e-03	ci right 7.821775e-03	k: 2789	n:370000
Cons ci ratio: 1.432803e-01	ci left: 1.874241e-03	ci right 2.166078e-03	k: 746	n:370000
KS ci ratio: 1.631799e-02	ci left: 1.338223e-01	ci right 1.360267e-01	k: 49921	n:370000
EGFR   370000 perm   150 sec   (2461 perm/sec)   p_kst 1.349216e-01   p_cons 2.016216e-03   p_joint 7.537838e-03

Joint ci ratio: 6.838175e-02	ci left: 8.280397e-03	ci right 8.869239e-03	k: 3257	n:380000
Cons ci ratio: 1.413999e-01	ci left: 1.875676e-03	ci right 2.163581e-03	k: 766	n:380000
KS ci ratio: 1.609700e-02	ci left: 1.339071e-01	ci right 1.360827e-01	k: 51297	n:380000
EGFR   380000 perm   156 sec   (2440 perm/sec)   p_kst 1.349921e-01   p_cons 2.015789e-03   p_joint 8.571053e-03

Joint ci ratio: 6.822060e-02	ci left: 8.108379e-03	ci right 8.683576e-03	k: 3273	n:390000
Cons ci ratio: 1.400381e-01	ci left: 1.864689e-03	ci right 2.147920e-03	k: 781	n:390000
KS ci ratio: 1.589783e-02	ci left: 1.337961e-01	ci right 1.359427e-01	k: 52598	n:390000
EGFR   390000 perm   161 sec   (2415 perm/sec)   p_kst 1.348667e-01   p_cons 2.002564e-03   p_joint 8.392308e-03

Joint ci ratio: 6.736193e-02	ci left: 8.112110e-03	ci right 8.680046e-03	k: 3357	n:400000
Cons ci ratio: 1.384541e-01	ci left: 1.861504e-03	ci right 2.140789e-03	k: 799	n:400000
KS ci ratio: 1.569847e-02	ci left: 1.338004e-01	ci right 1.359199e-01	k: 53943	n:400000
EGFR   400000 perm   167 sec   (2391 perm/sec)   p_kst 1.348575e-01   p_cons 1.997500e-03   p_joint 8.392500e-03

Joint ci ratio: 6.673068e-02	ci left: 8.067728e-03	ci right 8.627058e-03	k: 3421	n:410000
Cons ci ratio: 1.365052e-01	ci left: 1.870270e-03	ci right 2.146600e-03	k: 822	n:410000
KS ci ratio: 1.549493e-02	ci left: 1.339772e-01	ci right 1.360718e-01	k: 55359	n:410000
EGFR   410000 perm   174 sec   (2362 perm/sec)   p_kst 1.350220e-01   p_cons 2.004878e-03   p_joint 8.343902e-03

Joint ci ratio: 6.647348e-02	ci left: 7.938837e-03	ci right 8.487028e-03	k: 3448	n:420000
Cons ci ratio: 1.351174e-01	ci left: 1.864840e-03	ci right 2.137342e-03	k: 839	n:420000
KS ci ratio: 1.530830e-02	ci left: 1.340058e-01	ci right 1.360754e-01	k: 56716	n:420000
EGFR   420000 perm   180 sec   (2340 perm/sec)   p_kst 1.350381e-01   p_cons 1.997619e-03   p_joint 8.209524e-03

Joint ci ratio: 6.565025e-02	ci left: 7.953198e-03	ci right 8.495320e-03	k: 3535	n:430000
Cons ci ratio: 1.333042e-01	ci left: 1.873165e-03	ci right 2.142919e-03	k: 862	n:430000
KS ci ratio: 1.512389e-02	ci left: 1.341005e-01	ci right 1.361463e-01	k: 58102	n:430000
EGFR   430000 perm   185 sec   (2318 perm/sec)   p_kst 1.351209e-01   p_cons 2.004651e-03   p_joint 8.220930e-03

Joint ci ratio: 6.507455e-02	ci left: 7.913280e-03	ci right 8.447772e-03	k: 3598	n:440000
Cons ci ratio: 1.317112e-01	ci left: 1.876738e-03	ci right 2.143524e-03	k: 883	n:440000
KS ci ratio: 1.495704e-02	ci left: 1.340187e-01	ci right 1.360406e-01	k: 59412	n:440000
EGFR   440000 perm   192 sec   (2294 perm/sec)   p_kst 1.350273e-01   p_cons 2.006818e-03   p_joint 8.177273e-03

Joint ci ratio: 6.399598e-02	ci left: 8.004177e-03	ci right 8.535517e-03	k: 3720	n:450000
Cons ci ratio: 1.301020e-01	ci left: 1.882321e-03	ci right 2.146379e-03	k: 905	n:450000
KS ci ratio: 1.478138e-02	ci left: 1.341645e-01	ci right 1.361646e-01	k: 60823	n:450000
EGFR   450000 perm   198 sec   (2268 perm/sec)   p_kst 1.351622e-01   p_cons 2.011111e-03   p_joint 8.266667e-03

Joint ci ratio: 6.218270e-02	ci left: 8.298789e-03	ci right 8.833515e-03	k: 3939	n:460000
Cons ci ratio: 1.288288e-01	ci left: 1.879264e-03	ci right 2.140116e-03	k: 923	n:460000
KS ci ratio: 1.462087e-02	ci left: 1.341589e-01	ci right 1.361370e-01	k: 62167	n:460000
EGFR   460000 perm   205 sec   (2246 perm/sec)   p_kst 1.351457e-01   p_cons 2.006522e-03   p_joint 8.563043e-03

Joint ci ratio: 6.167740e-02	ci left: 8.258370e-03	ci right 8.786013e-03	k: 4004	n:470000
Cons ci ratio: 1.273217e-01	ci left: 1.884589e-03	ci right 2.142889e-03	k: 945	n:470000
KS ci ratio: 1.446179e-02	ci left: 1.342130e-01	ci right 1.361702e-01	k: 63539	n:470000
EGFR   470000 perm   211 sec   (2226 perm/sec)   p_kst 1.351894e-01   p_cons 2.010638e-03   p_joint 8.519149e-03

Joint ci ratio: 6.190150e-02	ci left: 8.028860e-03	ci right 8.543769e-03	k: 3976	n:480000
Cons ci ratio: 1.261933e-01	ci left: 1.879620e-03	ci right 2.134785e-03	k: 962	n:480000
KS ci ratio: 1.430996e-02	ci left: 1.342297e-01	ci right 1.361664e-01	k: 64894	n:480000
EGFR   480000 perm   217 sec   (2211 perm/sec)   p_kst 1.351958e-01   p_cons 2.004167e-03   p_joint 8.283333e-03

Joint ci ratio: 6.163394e-02	ci left: 7.935319e-03	ci right 8.441951e-03	k: 4011	n:490000
Cons ci ratio: 1.252225e-01	ci left: 1.870909e-03	ci right 2.122793e-03	k: 977	n:490000
KS ci ratio: 1.416183e-02	ci left: 1.342620e-01	ci right 1.361790e-01	k: 66257	n:490000
EGFR   490000 perm   223 sec   (2195 perm/sec)   p_kst 1.352184e-01   p_cons 1.993878e-03   p_joint 8.185714e-03

Joint ci ratio: 6.093109e-02	ci left: 7.959765e-03	ci right 8.461958e-03	k: 4104	n:500000
Cons ci ratio: 1.238992e-01	ci left: 1.874183e-03	ci right 2.123645e-03	k: 998	n:500000
KS ci ratio: 1.401676e-02	ci left: 1.343171e-01	ci right 1.362151e-01	k: 67632	n:500000
EGFR   500000 perm   229 sec   (2179 perm/sec)   p_kst 1.352640e-01   p_cons 1.996000e-03   p_joint 8.208000e-03

Joint ci ratio: 6.116931e-02	ci left: 7.743809e-03	ci right 8.234354e-03	k: 4073	n:510000
Cons ci ratio: 1.227377e-01	ci left: 1.873539e-03	ci right 2.120408e-03	k: 1017	n:510000
KS ci ratio: 1.387641e-02	ci left: 1.343643e-01	ci right 1.362438e-01	k: 69004	n:510000
EGFR   510000 perm   237 sec   (2156 perm/sec)   p_kst 1.353020e-01   p_cons 1.994118e-03   p_joint 7.986275e-03

Joint ci ratio: 6.063631e-02	ci left: 7.731241e-03	ci right 8.216573e-03	k: 4145	n:520000
Cons ci ratio: 1.216082e-01	ci left: 1.872932e-03	ci right 2.117286e-03	k: 1036	n:520000
KS ci ratio: 1.374280e-02	ci left: 1.343657e-01	ci right 1.362269e-01	k: 70353	n:520000
EGFR   520000 perm   243 sec   (2139 perm/sec)   p_kst 1.352942e-01   p_cons 1.992308e-03   p_joint 7.971154e-03

Joint ci ratio: 5.980337e-02	ci left: 7.800949e-03	ci right 8.283697e-03	k: 4261	n:530000
Cons ci ratio: 1.203951e-01	ci left: 1.876017e-03	ci right 2.118158e-03	k: 1057	n:530000
KS ci ratio: 1.361165e-02	ci left: 1.343896e-01	ci right 1.362333e-01	k: 71714	n:530000
EGFR   530000 perm   250 sec   (2123 perm/sec)   p_kst 1.353094e-01   p_cons 1.994340e-03   p_joint 8.039623e-03

Joint ci ratio: 5.965287e-02	ci left: 7.696607e-03	ci right 8.171658e-03	k: 4283	n:540000
Cons ci ratio: 1.191624e-01	ci left: 1.880796e-03	ci right 2.120893e-03	k: 1079	n:540000
KS ci ratio: 1.348984e-02	ci left: 1.343149e-01	ci right 1.361409e-01	k: 73022	n:540000
EGFR   540000 perm   256 sec   (2109 perm/sec)   p_kst 1.352259e-01   p_cons 1.998148e-03   p_joint 7.931481e-03

Joint ci ratio: 5.904220e-02	ci left: 7.716088e-03	ci right 8.187299e-03	k: 4372	n:550000
Cons ci ratio: 1.180741e-01	ci left: 1.881885e-03	ci right 2.119774e-03	k: 1099	n:550000
KS ci ratio: 1.336511e-02	ci left: 1.343499e-01	ci right 1.361594e-01	k: 74389	n:550000
EGFR   550000 perm   263 sec   (2093 perm/sec)   p_kst 1.352527e-01   p_cons 1.998182e-03   p_joint 7.949091e-03

Joint ci ratio: 5.873586e-02	ci left: 7.659227e-03	ci right 8.124457e-03	k: 4418	n:560000
Cons ci ratio: 1.168063e-01	ci left: 1.889878e-03	ci right 2.126036e-03	k: 1123	n:560000
KS ci ratio: 1.324550e-02	ci left: 1.343535e-01	ci right 1.361467e-01	k: 75739	n:560000
EGFR   560000 perm   270 sec   (2077 perm/sec)   p_kst 1.352482e-01   p_cons 2.005357e-03   p_joint 7.889286e-03

Joint ci ratio: 6.798878e-02	ci left: 5.601054e-03	ci right 5.996976e-03	k: 3304	n:570000
Cons ci ratio: 1.393705e-01	ci left: 1.289357e-03	ci right 1.484188e-03	k: 789	n:570000
KS ci ratio: 1.312875e-02	ci left: 1.343623e-01	ci right 1.361397e-01	k: 77092	n:570000
EGFR   570000 perm   277 sec   (2061 perm/sec)   p_kst 1.352491e-01   p_cons 1.384211e-03   p_joint 5.796491e-03

Joint ci ratio: 6.744029e-02	ci left: 5.596011e-03	ci right 5.988261e-03	k: 3358	n:580000
Cons ci ratio: 1.386709e-01	ci left: 1.280440e-03	ci right 1.472872e-03	k: 797	n:580000
KS ci ratio: 1.301935e-02	ci left: 1.342935e-01	ci right 1.360550e-01	k: 78400	n:580000
EGFR   580000 perm   283 sec   (2046 perm/sec)   p_kst 1.351724e-01   p_cons 1.374138e-03   p_joint 5.789655e-03

Joint ci ratio: 6.840254e-02	ci left: 5.346190e-03	ci right 5.726487e-03	k: 3265	n:590000
Cons ci ratio: 1.376401e-01	ci left: 1.278374e-03	ci right 1.468949e-03	k: 809	n:590000
KS ci ratio: 1.290497e-02	ci left: 1.343656e-01	ci right 1.361125e-01	k: 79790	n:590000
EGFR   590000 perm   290 sec   (2033 perm/sec)   p_kst 1.352373e-01   p_cons 1.371186e-03   p_joint 5.533898e-03

Joint ci ratio: 6.785433e-02	ci left: 5.343915e-03	ci right 5.720884e-03	k: 3318	n:600000
Cons ci ratio: 1.367152e-01	ci left: 1.274771e-03	ci right 1.463429e-03	k: 820	n:600000
KS ci ratio: 1.280285e-02	ci left: 1.342659e-01	ci right 1.359976e-01	k: 81078	n:600000
EGFR   600000 perm   297 sec   (2017 perm/sec)   p_kst 1.351300e-01   p_cons 1.366667e-03   p_joint 5.530000e-03

Joint ci ratio: 6.741969e-02	ci left: 5.325608e-03	ci right 5.698784e-03	k: 3361	n:610000
Cons ci ratio: 1.356456e-01	ci left: 1.274459e-03	ci right 1.461476e-03	k: 833	n:610000
KS ci ratio: 1.269724e-02	ci left: 1.342774e-01	ci right 1.359949e-01	k: 82432	n:610000
EGFR   610000 perm   305 sec   (2001 perm/sec)   p_kst 1.351344e-01   p_cons 1.365574e-03   p_joint 5.509836e-03

Joint ci ratio: 6.779883e-02	ci left: 5.181029e-03	ci right 5.546197e-03	k: 3324	n:620000
Cons ci ratio: 1.346803e-01	ci left: 1.272603e-03	ci right 1.457913e-03	k: 845	n:620000
KS ci ratio: 1.259072e-02	ci left: 1.343530e-01	ci right 1.360569e-01	k: 83826	n:620000
EGFR   620000 perm   312 sec   (1985 perm/sec)   p_kst 1.352032e-01   p_cons 1.362903e-03   p_joint 5.361290e-03

Joint ci ratio: 7.008426e-02	ci left: 4.768047e-03	ci right 5.115895e-03	k: 3112	n:630000
Cons ci ratio: 1.339701e-01	ci left: 1.266209e-03	ci right 1.449537e-03	k: 854	n:630000
KS ci ratio: 1.249116e-02	ci left: 1.343455e-01	ci right 1.360357e-01	k: 85169	n:630000
EGFR   630000 perm   320 sec   (1970 perm/sec)   p_kst 1.351889e-01   p_cons 1.355556e-03   p_joint 4.939683e-03

Joint ci ratio: 6.957231e-02	ci left: 4.764166e-03	ci right 5.109089e-03	k: 3158	n:640000
Cons ci ratio: 1.329631e-01	ci left: 1.266058e-03	ci right 1.447878e-03	k: 867	n:640000
KS ci ratio: 1.239426e-02	ci left: 1.343320e-01	ci right 1.360088e-01	k: 86508	n:640000
EGFR   640000 perm   328 sec   (1951 perm/sec)   p_kst 1.351688e-01   p_cons 1.354687e-03   p_joint 4.934375e-03

Joint ci ratio: 6.890955e-02	ci left: 4.783094e-03	ci right 5.125957e-03	k: 3219	n:650000
Cons ci ratio: 1.317541e-01	ci left: 1.270381e-03	ci right 1.451033e-03	k: 883	n:650000
KS ci ratio: 1.229747e-02	ci left: 1.343589e-01	ci right 1.360229e-01	k: 87873	n:650000
EGFR   650000 perm   336 sec   (1934 perm/sec)   p_kst 1.351892e-01   p_cons 1.358462e-03   p_joint 4.952308e-03

Joint ci ratio: 6.306613e-02	ci left: 5.636110e-03	ci right 6.004612e-03	k: 3840	n:660000
Cons ci ratio: 1.307230e-01	ci left: 1.271649e-03	ci right 1.450956e-03	k: 897	n:660000
KS ci ratio: 1.220118e-02	ci left: 1.344182e-01	ci right 1.360698e-01	k: 89260	n:660000
EGFR   660000 perm   344 sec   (1920 perm/sec)   p_kst 1.352424e-01   p_cons 1.359091e-03   p_joint 5.818182e-03

Joint ci ratio: 6.255497e-02	ci left: 5.644543e-03	ci right 6.010496e-03	k: 3903	n:670000
Cons ci ratio: 1.297157e-01	ci left: 1.272884e-03	ci right 1.450876e-03	k: 911	n:670000
KS ci ratio: 1.210866e-02	ci left: 1.344461e-01	ci right 1.360854e-01	k: 90627	n:670000
EGFR   670000 perm   351 sec   (1908 perm/sec)   p_kst 1.352642e-01   p_cons 1.359701e-03   p_joint 5.825373e-03

Joint ci ratio: 6.576897e-02	ci left: 5.026088e-03	ci right 5.369325e-03	k: 3533	n:680000
Cons ci ratio: 1.288010e-01	ci left: 1.272664e-03	ci right 1.449275e-03	k: 924	n:680000
KS ci ratio: 1.201700e-02	ci left: 1.344966e-01	ci right 1.361241e-01	k: 92010	n:680000
EGFR   680000 perm   359 sec   (1895 perm/sec)   p_kst 1.353088e-01   p_cons 1.358824e-03   p_joint 5.195588e-03

Joint ci ratio: 6.520817e-02	ci left: 5.040205e-03	ci right 5.381360e-03	k: 3594	n:690000
Cons ci ratio: 1.272953e-01	ci left: 1.285083e-03	ci right 1.461175e-03	k: 946	n:690000
KS ci ratio: 1.193020e-02	ci left: 1.344909e-01	ci right 1.361064e-01	k: 93355	n:690000
EGFR   690000 perm   366 sec   (1883 perm/sec)   p_kst 1.352971e-01   p_cons 1.371014e-03   p_joint 5.208696e-03

Joint ci ratio: 6.486690e-02	ci left: 5.021604e-03	ci right 5.359654e-03	k: 3632	n:700000
Cons ci ratio: 1.263647e-01	ci left: 1.286090e-03	ci right 1.460935e-03	k: 960	n:700000
KS ci ratio: 1.184453e-02	ci left: 1.344995e-01	ci right 1.361035e-01	k: 94710	n:700000
EGFR   700000 perm   374 sec   (1871 perm/sec)   p_kst 1.353000e-01   p_cons 1.371429e-03   p_joint 5.188571e-03

Joint ci ratio: 6.486031e-02	ci left: 4.952257e-03	ci right 5.285603e-03	k: 3633	n:710000
Cons ci ratio: 1.255186e-01	ci left: 1.285709e-03	ci right 1.459245e-03	k: 973	n:710000
KS ci ratio: 1.175998e-02	ci left: 1.345220e-01	ci right 1.361147e-01	k: 96075	n:710000
EGFR   710000 perm   382 sec   (1860 perm/sec)   p_kst 1.353169e-01   p_cons 1.370423e-03   p_joint 5.116901e-03

Joint ci ratio: 6.304852e-02	ci left: 5.171864e-03	ci right 5.509913e-03	k: 3844	n:720000
Cons ci ratio: 1.246261e-01	ci left: 1.286688e-03	ci right 1.459030e-03	k: 987	n:720000
KS ci ratio: 1.168067e-02	ci left: 1.344747e-01	ci right 1.360560e-01	k: 97390	n:720000
EGFR   720000 perm   390 sec   (1847 perm/sec)   p_kst 1.352639e-01   p_cons 1.370833e-03   p_joint 5.338889e-03

Joint ci ratio: 6.345021e-02	ci left: 5.036291e-03	ci right 5.367654e-03	k: 3796	n:730000
Cons ci ratio: 1.240005e-01	ci left: 1.282335e-03	ci right 1.453168e-03	k: 997	n:730000
KS ci ratio: 1.160254e-02	ci left: 1.344369e-01	ci right 1.360071e-01	k: 98711	n:730000
EGFR   730000 perm   398 sec   (1833 perm/sec)   p_kst 1.352205e-01   p_cons 1.365753e-03   p_joint 5.200000e-03

Joint ci ratio: 6.304485e-02	ci left: 5.033402e-03	ci right 5.362381e-03	k: 3845	n:740000
Cons ci ratio: 1.233842e-01	ci left: 1.278101e-03	ci right 1.447462e-03	k: 1007	n:740000
KS ci ratio: 1.152836e-02	ci left: 1.343516e-01	ci right 1.359107e-01	k: 99996	n:740000
EGFR   740000 perm   407 sec   (1818 perm/sec)   p_kst 1.351297e-01   p_cons 1.360811e-03   p_joint 5.195946e-03

Joint ci ratio: 6.258259e-02	ci left: 5.041097e-03	ci right 5.368076e-03	k: 3902	n:750000
Cons ci ratio: 1.222967e-01	ci left: 1.284323e-03	ci right 1.452900e-03	k: 1025	n:750000
KS ci ratio: 1.145362e-02	ci left: 1.343085e-01	ci right 1.358570e-01	k: 101311	n:750000
EGFR   750000 perm   415 sec   (1808 perm/sec)   p_kst 1.350813e-01   p_cons 1.366667e-03   p_joint 5.202667e-03

Joint ci ratio: 6.218562e-02	ci left: 5.039530e-03	ci right 5.364259e-03	k: 3952	n:760000
Cons ci ratio: 1.215879e-01	ci left: 1.282732e-03	ci right 1.450054e-03	k: 1037	n:760000
KS ci ratio: 1.137698e-02	ci left: 1.343348e-01	ci right 1.358732e-01	k: 102678	n:760000
EGFR   760000 perm   423 sec   (1797 perm/sec)   p_kst 1.351026e-01   p_cons 1.364474e-03   p_joint 5.200000e-03

Joint ci ratio: 6.354297e-02	ci left: 4.761864e-03	ci right 5.075645e-03	k: 3786	n:770000
Cons ci ratio: 1.206613e-01	ci left: 1.286222e-03	ci right 1.452630e-03	k: 1053	n:770000
KS ci ratio: 1.130123e-02	ci left: 1.343735e-01	ci right 1.359020e-01	k: 104055	n:770000
EGFR   770000 perm   431 sec   (1785 perm/sec)   p_kst 1.351364e-01   p_cons 1.367532e-03   p_joint 4.916883e-03

Joint ci ratio: 6.331856e-02	ci left: 4.734879e-03	ci right 5.045739e-03	k: 3813	n:780000
Cons ci ratio: 1.199804e-01	ci left: 1.284654e-03	ci right 1.449854e-03	k: 1065	n:780000
KS ci ratio: 1.122661e-02	ci left: 1.344189e-01	ci right 1.359377e-01	k: 105438	n:780000
EGFR   780000 perm   440 sec   (1773 perm/sec)   p_kst 1.351769e-01   p_cons 1.365385e-03   p_joint 4.888462e-03

Joint ci ratio: 6.308000e-02	ci left: 4.711070e-03	ci right 5.019160e-03	k: 3842	n:790000
Cons ci ratio: 1.190898e-01	ci left: 1.288040e-03	ci right 1.452360e-03	k: 1081	n:790000
KS ci ratio: 1.115809e-02	ci left: 1.343659e-01	ci right 1.358748e-01	k: 106744	n:790000
EGFR   790000 perm   449 sec   (1760 perm/sec)   p_kst 1.351190e-01   p_cons 1.368354e-03   p_joint 4.863291e-03

Joint ci ratio: 6.286043e-02	ci left: 4.685399e-03	ci right 4.990704e-03	k: 3869	n:800000
Cons ci ratio: 1.187069e-01	ci left: 1.280429e-03	ci right 1.443216e-03	k: 1088	n:800000
KS ci ratio: 1.108566e-02	ci left: 1.344227e-01	ci right 1.359224e-01	k: 108137	n:800000
EGFR   800000 perm   458 sec   (1747 perm/sec)   p_kst 1.351712e-01   p_cons 1.360000e-03   p_joint 4.836250e-03

Joint ci ratio: 6.278899e-02	ci left: 4.638487e-03	ci right 4.940379e-03	k: 3878	n:810000
Cons ci ratio: 1.184360e-01	ci left: 1.270611e-03	ci right 1.431755e-03	k: 1093	n:810000
KS ci ratio: 1.101450e-02	ci left: 1.344807e-01	ci right 1.359713e-01	k: 109532	n:810000
EGFR   810000 perm   466 sec   (1737 perm/sec)   p_kst 1.352247e-01   p_cons 1.349383e-03   p_joint 4.787654e-03

Joint ci ratio: 6.242804e-02	ci left: 4.635939e-03	ci right 4.935868e-03	k: 3923	n:820000
Cons ci ratio: 1.180057e-01	ci left: 1.264583e-03	ci right 1.424339e-03	k: 1101	n:820000
KS ci ratio: 1.094555e-02	ci left: 1.345190e-01	ci right 1.360007e-01	k: 110912	n:820000
EGFR   820000 perm   475 sec   (1727 perm/sec)   p_kst 1.352585e-01   p_cons 1.342683e-03   p_joint 4.784146e-03

Joint ci ratio: 6.196352e-02	ci left: 4.650064e-03	ci right 4.948589e-03	k: 3982	n:830000
Cons ci ratio: 1.170010e-01	ci left: 1.271566e-03	ci right 1.430742e-03	k: 1120	n:830000
KS ci ratio: 1.088242e-02	ci left: 1.344590e-01	ci right 1.359315e-01	k: 112211	n:830000
EGFR   830000 perm   484 sec   (1716 perm/sec)   p_kst 1.351940e-01   p_cons 1.349398e-03   p_joint 4.797590e-03

Joint ci ratio: 6.216951e-02	ci left: 4.564228e-03	ci right 4.858251e-03	k: 3956	n:840000
Cons ci ratio: 1.162259e-01	ci left: 1.273765e-03	ci right 1.432087e-03	k: 1135	n:840000
KS ci ratio: 1.081739e-02	ci left: 1.344647e-01	ci right 1.359283e-01	k: 113564	n:840000
EGFR   840000 perm   493 sec   (1705 perm/sec)   p_kst 1.351952e-01   p_cons 1.351190e-03   p_joint 4.709524e-03

Joint ci ratio: 6.170300e-02	ci left: 4.580028e-03	ci right 4.872775e-03	k: 4016	n:850000
Cons ci ratio: 1.153156e-01	ci left: 1.279343e-03	ci right 1.437028e-03	k: 1153	n:850000
KS ci ratio: 1.075167e-02	ci left: 1.345101e-01	ci right 1.359653e-01	k: 114951	n:850000
EGFR   850000 perm   502 sec   (1694 perm/sec)   p_kst 1.352365e-01   p_cons 1.356471e-03   p_joint 4.724706e-03

Joint ci ratio: 6.139072e-02	ci left: 4.573712e-03	ci right 4.864523e-03	k: 4057	n:860000
Cons ci ratio: 1.145242e-01	ci left: 1.282537e-03	ci right 1.439458e-03	k: 1169	n:860000
KS ci ratio: 1.069028e-02	ci left: 1.344861e-01	ci right 1.359326e-01	k: 116279	n:860000
EGFR   860000 perm   511 sec   (1682 perm/sec)   p_kst 1.352081e-01   p_cons 1.359302e-03   p_joint 4.717442e-03

Joint ci ratio: 5.956887e-02	ci left: 4.805301e-03	ci right 5.101458e-03	k: 4308	n:870000
Cons ci ratio: 1.138932e-01	ci left: 1.282310e-03	ci right 1.438281e-03	k: 1182	n:870000
KS ci ratio: 1.062678e-02	ci left: 1.345314e-01	ci right 1.359698e-01	k: 117667	n:870000
EGFR   870000 perm   520 sec   (1672 perm/sec)   p_kst 1.352494e-01   p_cons 1.358621e-03   p_joint 4.951724e-03

Joint ci ratio: 5.913767e-02	ci left: 4.821225e-03	ci right 5.116139e-03	k: 4371	n:880000
Cons ci ratio: 1.132726e-01	ci left: 1.282092e-03	ci right 1.437129e-03	k: 1195	n:880000
KS ci ratio: 1.056821e-02	ci left: 1.344919e-01	ci right 1.359219e-01	k: 118981	n:880000
EGFR   880000 perm   530 sec   (1662 perm/sec)   p_kst 1.352057e-01   p_cons 1.357955e-03   p_joint 4.967045e-03

Joint ci ratio: 5.926889e-02	ci left: 4.746016e-03	ci right 5.036996e-03	k: 4352	n:890000
Cons ci ratio: 1.127554e-01	ci left: 1.279696e-03	ci right 1.433691e-03	k: 1206	n:890000
KS ci ratio: 1.051029e-02	ci left: 1.344600e-01	ci right 1.358817e-01	k: 120301	n:890000
EGFR   890000 perm   539 sec   (1652 perm/sec)   p_kst 1.351697e-01   p_cons 1.355056e-03   p_joint 4.889888e-03

Joint ci ratio: 5.897850e-02	ci left: 4.740353e-03	ci right 5.029514e-03	k: 4395	n:900000
Cons ci ratio: 1.121992e-01	ci left: 1.278436e-03	ci right 1.431469e-03	k: 1218	n:900000
KS ci ratio: 1.045152e-02	ci left: 1.344687e-01	ci right 1.358826e-01	k: 121657	n:900000
EGFR   900000 perm   548 sec   (1643 perm/sec)   p_kst 1.351744e-01   p_cons 1.353333e-03   p_joint 4.883333e-03

Joint ci ratio: 5.860616e-02	ci left: 4.748896e-03	ci right 5.036687e-03	k: 4451	n:910000
Cons ci ratio: 1.117420e-01	ci left: 1.275068e-03	ci right 1.427036e-03	k: 1228	n:910000
KS ci ratio: 1.039598e-02	ci left: 1.344268e-01	ci right 1.358327e-01	k: 122967	n:910000
EGFR   910000 perm   557 sec   (1634 perm/sec)   p_kst 1.351286e-01   p_cons 1.349451e-03   p_joint 4.891209e-03

Joint ci ratio: 5.833840e-02	ci left: 4.741191e-03	ci right 5.027158e-03	k: 4492	n:920000
Cons ci ratio: 1.109769e-01	ci left: 1.279172e-03	ci right 1.430517e-03	k: 1245	n:920000
KS ci ratio: 1.034246e-02	ci left: 1.343598e-01	ci right 1.357577e-01	k: 124253	n:920000
EGFR   920000 perm   567 sec   (1623 perm/sec)   p_kst 1.350576e-01   p_cons 1.353261e-03   p_joint 4.882609e-03

Joint ci ratio: 5.802928e-02	ci left: 4.741072e-03	ci right 5.025466e-03	k: 4540	n:930000
Cons ci ratio: 1.099660e-01	ci left: 1.289466e-03	ci right 1.440549e-03	k: 1268	n:930000
KS ci ratio: 1.028622e-02	ci left: 1.343748e-01	ci right 1.357652e-01	k: 125614	n:930000
EGFR   930000 perm   576 sec   (1613 perm/sec)   p_kst 1.350688e-01   p_cons 1.363441e-03   p_joint 4.881720e-03

Joint ci ratio: 5.769976e-02	ci left: 4.745154e-03	ci right 5.028123e-03	k: 4592	n:940000
Cons ci ratio: 1.091941e-01	ci left: 1.294373e-03	ci right 1.444897e-03	k: 1286	n:940000
KS ci ratio: 1.023232e-02	ci left: 1.343565e-01	ci right 1.357394e-01	k: 126944	n:940000
EGFR   940000 perm   587 sec   (1603 perm/sec)   p_kst 1.350468e-01   p_cons 1.368085e-03   p_joint 4.885106e-03

Joint ci ratio: 5.740063e-02	ci left: 4.745004e-03	ci right 5.026448e-03	k: 4640	n:950000
Cons ci ratio: 1.085632e-01	ci left: 1.296107e-03	ci right 1.445907e-03	k: 1301	n:950000
KS ci ratio: 1.017711e-02	ci left: 1.343880e-01	ci right 1.357637e-01	k: 128321	n:950000
EGFR   950000 perm   597 sec   (1592 perm/sec)   p_kst 1.350747e-01   p_cons 1.369474e-03   p_joint 4.884211e-03

Joint ci ratio: 5.727204e-02	ci left: 4.717137e-03	ci right 4.996280e-03	k: 4661	n:960000
Cons ci ratio: 1.080253e-01	ci left: 1.295781e-03	ci right 1.444754e-03	k: 1314	n:960000
KS ci ratio: 1.012549e-02	ci left: 1.343565e-01	ci right 1.357249e-01	k: 129638	n:960000
EGFR   960000 perm   607 sec   (1583 perm/sec)   p_kst 1.350396e-01   p_cons 1.368750e-03   p_joint 4.855208e-03

Joint ci ratio: 5.643422e-02	ci left: 4.809775e-03	ci right 5.090101e-03	k: 4800	n:970000
Cons ci ratio: 1.072932e-01	ci left: 1.300479e-03	ci right 1.448915e-03	k: 1332	n:970000
KS ci ratio: 1.007309e-02	ci left: 1.343617e-01	ci right 1.357230e-01	k: 130990	n:970000
EGFR   970000 perm   617 sec   (1573 perm/sec)   p_kst 1.350412e-01   p_cons 1.373196e-03   p_joint 4.948454e-03

Joint ci ratio: 5.614843e-02	ci left: 4.809992e-03	ci right 5.088865e-03	k: 4849	n:980000
Cons ci ratio: 1.065363e-01	ci left: 1.306079e-03	ci right 1.454036e-03	k: 1351	n:980000
KS ci ratio: 1.002171e-02	ci left: 1.343617e-01	ci right 1.357160e-01	k: 132337	n:980000
EGFR   980000 perm   627 sec   (1563 perm/sec)   p_kst 1.350378e-01   p_cons 1.378571e-03   p_joint 4.947959e-03

Joint ci ratio: 5.590136e-02	ci left: 4.804231e-03	ci right 5.081505e-03	k: 4892	n:990000
Cons ci ratio: 1.058339e-01	ci left: 1.310585e-03	ci right 1.458013e-03	k: 1369	n:990000
KS ci ratio: 9.971116e-03	ci left: 1.343617e-01	ci right 1.357091e-01	k: 133684	n:990000
EGFR   990000 perm   637 sec   (1555 perm/sec)   p_kst 1.350343e-01   p_cons 1.382828e-03   p_joint 4.941414e-03

Joint ci ratio: 5.560094e-02	ci left: 4.808451e-03	ci right 5.084429e-03	k: 4945	n:1000000
Cons ci ratio: 1.049561e-01	ci left: 1.319873e-03	ci right 1.467039e-03	k: 1392	n:1000000
KS ci ratio: 9.919494e-03	ci left: 1.344036e-01	ci right 1.357445e-01	k: 135073	n:1000000
EGFR   1000000 perm   647 sec   (1544 perm/sec)   p_kst 1.350730e-01   p_cons 1.392000e-03   p_joint 4.945000e-03

Joint ci ratio: 5.385730e-02	ci left: 5.077264e-03	ci right 5.359248e-03	k: 5269	n:1010000
Cons ci ratio: 9.432922e-02	ci left: 1.626396e-03	ci right 1.788365e-03	k: 1723	n:1010000
KS ci ratio: 9.871719e-03	ci left: 1.343726e-01	ci right 1.357067e-01	k: 136389	n:1010000
EGFR   1010000 perm   660 sec   (1531 perm/sec)   p_kst 1.350386e-01   p_cons 1.705941e-03   p_joint 5.216832e-03

Outputting figure to mutsig2_images.part000000000055/EGFR.11_4009_1010000_0.13504_0.0017059_0.0052168.png
                gene_name: EGFR
               theta_stop: 0.094 
                    nperm: 1010000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.0017 
      ci_cons_bounds_left: 0.0016 
     ci_cons_bounds_right: 0.0018 
                  p_joint: 0.0052 
     ci_joint_bounds_left: 0.0051 
    ci_joint_bounds_right: 0.0054 

Current progress: 4 percent done.
EFCAB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.758361e-02	ci left: 6.594774e-01	ci right 6.780242e-01	k: 6688	n:10000
Cons ci ratio: 5.082408e-02	ci left: 3.634102e-01	ci right 3.824638e-01	k: 3729	n:10000
KS ci ratio: 3.604427e-02	ci left: 5.319735e-01	ci right 5.516021e-01	k: 5418	n:10000
EFCAB6   10000 perm   3 sec   (3888 perm/sec)   p_kst 5.418000e-01   p_cons 3.729000e-01   p_joint 6.688000e-01

Outputting figure to mutsig2_images.part000000000055/EFCAB6.9_4626_10000_0.5418_0.3729_0.6688.png
                gene_name: EFCAB6
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 5 percent done.
EHD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.650411e-02	ci left: 4.056177e-01	ci right 4.250317e-01	k: 4153	n:10000
Cons ci ratio: 7.869324e-02	ci left: 1.909179e-01	ci right 2.066579e-01	k: 1987	n:10000
KS ci ratio: 3.668042e-02	ci left: 5.232632e-01	ci right 5.429175e-01	k: 5331	n:10000
EHD3   10000 perm   2 sec   (5255 perm/sec)   p_kst 5.331000e-01   p_cons 1.987000e-01   p_joint 4.153000e-01

Outputting figure to mutsig2_images.part000000000055/EHD3.9_1632_10000_0.5331_0.1987_0.4153.png
                gene_name: EHD3
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 7 percent done.
EIF2C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.994587e-02	ci left: 4.806559e-01	ci right 5.003496e-01	k: 4905	n:10000
Cons ci ratio: 2.248696e-02	ci left: 7.438177e-01	ci right 7.608351e-01	k: 7524	n:10000
KS ci ratio: 5.155999e-02	ci left: 3.567477e-01	ci right 3.757303e-01	k: 3662	n:10000
EIF2C1   10000 perm   2 sec   (4161 perm/sec)   p_kst 3.662000e-01   p_cons 7.524000e-01   p_joint 4.905000e-01

Outputting figure to mutsig2_images.part000000000055/EIF2C1.9_2650_10000_0.3662_0.7524_0.4905.png
                gene_name: EIF2C1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 9 percent done.
EFCAB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.454625e-01	ci left: 6.275582e-02	ci right 7.269780e-02	k: 676	n:10000
Cons ci ratio: 1.880121e-02	ci left: 8.052171e-01	ci right 8.206001e-01	k: 8130	n:10000
KS ci ratio: 3.376227e-01	ci left: 1.105573e-02	ci right 1.563427e-02	k: 132	n:10000
EFCAB5   10000 perm   2 sec   (4370 perm/sec)   p_kst 1.320000e-02   p_cons 8.130000e-01   p_joint 6.760000e-02

Joint ci ratio: 1.157874e-01	ci left: 5.105351e-02	ci right 5.737688e-02	k: 1083	n:20000
Cons ci ratio: 1.320660e-02	ci left: 8.095479e-01	ci right 8.203604e-01	k: 16300	n:20000
KS ci ratio: 2.378366e-01	ci left: 1.180547e-02	ci right 1.503828e-02	k: 267	n:20000
EFCAB5   20000 perm   5 sec   (4005 perm/sec)   p_kst 1.335000e-02   p_cons 8.150000e-01   p_joint 5.415000e-02

Joint ci ratio: 1.252860e-01	ci left: 2.961697e-02	ci right 3.360776e-02	k: 947	n:30000
Cons ci ratio: 1.025258e-02	ci left: 8.254315e-01	ci right 8.339712e-01	k: 24892	n:30000
KS ci ratio: 1.954299e-01	ci left: 1.193916e-02	ci right 1.455637e-02	k: 396	n:30000
EFCAB5   30000 perm   8 sec   (3862 perm/sec)   p_kst 1.320000e-02   p_cons 8.297333e-01   p_joint 3.156667e-02

Joint ci ratio: 1.125168e-01	ci left: 2.779061e-02	ci right 3.112816e-02	k: 1177	n:40000
Cons ci ratio: 8.946664e-03	ci left: 8.238369e-01	ci right 8.312655e-01	k: 33103	n:40000
KS ci ratio: 1.689786e-01	ci left: 1.215240e-02	ci right 1.441908e-02	k: 530	n:40000
EFCAB5   40000 perm   11 sec   (3763 perm/sec)   p_kst 1.325000e-02   p_cons 8.275750e-01   p_joint 2.942500e-02

Joint ci ratio: 9.626308e-02	ci left: 3.055267e-02	ci right 3.366196e-02	k: 1604	n:50000
Cons ci ratio: 8.005332e-03	ci left: 8.241191e-01	ci right 8.307629e-01	k: 41373	n:50000
KS ci ratio: 1.507657e-01	ci left: 1.233348e-02	ci right 1.436361e-02	k: 666	n:50000
EFCAB5   50000 perm   14 sec   (3687 perm/sec)   p_kst 1.332000e-02   p_cons 8.274600e-01   p_joint 3.208000e-02

Joint ci ratio: 8.491436e-02	ci left: 3.284164e-02	ci right 3.577030e-02	k: 2057	n:60000
Cons ci ratio: 7.302953e-03	ci left: 8.246038e-01	ci right 8.306645e-01	k: 49659	n:60000
KS ci ratio: 1.374907e-01	ci left: 1.244694e-02	ci right 1.430057e-02	k: 801	n:60000
EFCAB5   60000 perm   17 sec   (3621 perm/sec)   p_kst 1.335000e-02   p_cons 8.276500e-01   p_joint 3.428333e-02

Joint ci ratio: 8.404189e-02	ci left: 2.887461e-02	ci right 3.142168e-02	k: 2109	n:70000
Cons ci ratio: 6.758668e-03	ci left: 8.249392e-01	ci right 8.305478e-01	k: 57943	n:70000
KS ci ratio: 1.282444e-01	ci left: 1.232611e-02	ci right 1.402889e-02	k: 921	n:70000
EFCAB5   70000 perm   20 sec   (3538 perm/sec)   p_kst 1.315714e-02   p_cons 8.277571e-01   p_joint 3.012857e-02

Joint ci ratio: 7.381716e-02	ci left: 3.279167e-02	ci right 3.531727e-02	k: 2723	n:80000
Cons ci ratio: 6.329786e-03	ci left: 8.247758e-01	ci right 8.300254e-01	k: 66193	n:80000
KS ci ratio: 1.200030e-01	ci left: 1.237205e-02	ci right 1.396354e-02	k: 1052	n:80000
EFCAB5   80000 perm   23 sec   (3482 perm/sec)   p_kst 1.315000e-02   p_cons 8.274125e-01   p_joint 3.403750e-02

Joint ci ratio: 7.219061e-02	ci left: 3.057585e-02	ci right 3.287668e-02	k: 2854	n:90000
Cons ci ratio: 5.968266e-03	ci left: 8.249038e-01	ci right 8.298528e-01	k: 74465	n:90000
KS ci ratio: 1.131702e-01	ci left: 1.241052e-02	ci right 1.390999e-02	k: 1183	n:90000
EFCAB5   90000 perm   26 sec   (3434 perm/sec)   p_kst 1.314444e-02   p_cons 8.273889e-01   p_joint 3.171111e-02

Joint ci ratio: 7.234794e-02	ci left: 2.748720e-02	ci right 2.956027e-02	k: 2851	n:100000
Cons ci ratio: 5.658597e-03	ci left: 8.252042e-01	ci right 8.298968e-01	k: 82756	n:100000
KS ci ratio: 1.075101e-01	ci left: 1.241416e-02	ci right 1.383429e-02	k: 1311	n:100000
EFCAB5   100000 perm   30 sec   (3369 perm/sec)   p_kst 1.311000e-02   p_cons 8.275600e-01   p_joint 2.851000e-02

Joint ci ratio: 7.260141e-02	ci left: 2.488002e-02	ci right 2.676328e-02	k: 2839	n:110000
Cons ci ratio: 5.401373e-03	ci left: 8.249892e-01	ci right 8.294663e-01	k: 90996	n:110000
KS ci ratio: 1.027670e-01	ci left: 1.238322e-02	ci right 1.373354e-02	k: 1435	n:110000
EFCAB5   110000 perm   33 sec   (3332 perm/sec)   p_kst 1.304545e-02   p_cons 8.272364e-01   p_joint 2.580909e-02

Joint ci ratio: 6.153799e-02	ci left: 3.170087e-02	ci right 3.372179e-02	k: 3924	n:120000
Cons ci ratio: 5.163330e-03	ci left: 8.255345e-01	ci right 8.298163e-01	k: 99322	n:120000
KS ci ratio: 9.809242e-02	ci left: 1.248869e-02	ci right 1.378500e-02	k: 1575	n:120000
EFCAB5   120000 perm   37 sec   (3287 perm/sec)   p_kst 1.312500e-02   p_cons 8.276833e-01   p_joint 3.270000e-02

Outputting figure to mutsig2_images.part000000000055/EFCAB5.8_4771_120000_0.013125_0.82768_0.0327.png
                gene_name: EFCAB5
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 11 percent done.
EFHB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.643801e-02	ci left: 5.265668e-01	ci right 5.462120e-01	k: 5364	n:10000
Cons ci ratio: 2.535597e-02	ci left: 6.959529e-01	ci right 7.139275e-01	k: 7050	n:10000
KS ci ratio: 6.148482e-02	ci left: 2.800289e-01	ci right 2.978941e-01	k: 2889	n:10000
EFHB   10000 perm   3 sec   (3828 perm/sec)   p_kst 2.889000e-01   p_cons 7.050000e-01   p_joint 5.364000e-01

Outputting figure to mutsig2_images.part000000000055/EFHB.8_2554_10000_0.2889_0.705_0.5364.png
                gene_name: EFHB
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 12 percent done.
EGR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
Cons ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
KS ci ratio: 8.072598e-02	ci left: 1.830411e-01	ci right 1.985394e-01	k: 1907	n:10000
EGR2   10000 perm   2 sec   (5465 perm/sec)   p_kst 1.907000e-01   p_cons 4.670000e-02   p_joint 1.072000e-01

Joint ci ratio: 1.096623e-01	ci left: 5.674781e-02	ci right 6.338081e-02	k: 1200	n:20000
Cons ci ratio: 1.250222e-01	ci left: 4.391389e-02	ci right 4.981875e-02	k: 936	n:20000
KS ci ratio: 5.753019e-02	ci left: 1.829518e-01	ci right 1.938389e-01	k: 3767	n:20000
EGR2   20000 perm   4 sec   (4626 perm/sec)   p_kst 1.883500e-01   p_cons 4.680000e-02   p_joint 6.000000e-02

Joint ci ratio: 7.117087e-02	ci left: 8.855559e-02	ci right 9.512370e-02	k: 2754	n:30000
Cons ci ratio: 1.009003e-01	ci left: 4.547813e-02	ci right 5.034324e-02	k: 1436	n:30000
KS ci ratio: 4.676454e-02	ci left: 1.853100e-01	ci right 1.942168e-01	k: 5692	n:30000
EGR2   30000 perm   7 sec   (4493 perm/sec)   p_kst 1.897333e-01   p_cons 4.786667e-02   p_joint 9.180000e-02

Joint ci ratio: 5.529988e-02	ci left: 1.085054e-01	ci right 1.147011e-01	k: 4463	n:40000
Cons ci ratio: 8.518715e-02	ci left: 4.812934e-02	ci right 5.243625e-02	k: 2010	n:40000
KS ci ratio: 4.039323e-02	ci left: 1.867113e-01	ci right 1.944336e-01	k: 7622	n:40000
EGR2   40000 perm   9 sec   (4438 perm/sec)   p_kst 1.905500e-01   p_cons 5.025000e-02   p_joint 1.115750e-01

Outputting figure to mutsig2_images.part000000000055/EGR2.8_1439_40000_0.19055_0.05025_0.11157.png
                gene_name: EGR2
               theta_stop: 0.085 
                    nperm: 40000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 14 percent done.
EGFLAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.793918e-02	ci left: 6.537398e-01	ci right 6.723652e-01	k: 6631	n:10000
Cons ci ratio: 3.355961e-02	ci left: 5.672458e-01	ci right 5.867093e-01	k: 5770	n:10000
KS ci ratio: 4.445889e-02	ci left: 4.275470e-01	ci right 4.470895e-01	k: 4373	n:10000
EGFLAM   10000 perm   2 sec   (4521 perm/sec)   p_kst 4.373000e-01   p_cons 5.770000e-01   p_joint 6.631000e-01

Outputting figure to mutsig2_images.part000000000055/EGFLAM.7_3132_10000_0.4373_0.577_0.6631.png
                gene_name: EGFLAM
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 16 percent done.
EHBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.523350e-01	ci left: 5.735153e-02	ci right 6.690551e-02	k: 620	n:10000
Cons ci ratio: 4.962703e-01	ci left: 4.669135e-03	ci right 7.828899e-03	k: 61	n:10000
KS ci ratio: 4.646584e-02	ci left: 4.060162e-01	ci right 4.254329e-01	k: 4157	n:10000
EHBP1   10000 perm   2 sec   (4437 perm/sec)   p_kst 4.157000e-01   p_cons 6.100000e-03   p_joint 6.200000e-02

Joint ci ratio: 1.193201e-01	ci left: 4.813723e-02	ci right 5.429407e-02	k: 1023	n:20000
Cons ci ratio: 3.400560e-01	ci left: 5.479249e-03	ci right 7.767742e-03	k: 131	n:20000
KS ci ratio: 3.332707e-02	ci left: 4.020253e-01	ci right 4.157012e-01	k: 8177	n:20000
EHBP1   20000 perm   5 sec   (4156 perm/sec)   p_kst 4.088500e-01   p_cons 6.550000e-03   p_joint 5.115000e-02

Joint ci ratio: 9.366089e-02	ci left: 5.257711e-02	ci right 5.777613e-02	k: 1654	n:30000
Cons ci ratio: 2.783654e-01	ci left: 5.653057e-03	ci right 7.511107e-03	k: 196	n:30000
KS ci ratio: 2.718885e-02	ci left: 4.036950e-01	ci right 4.148559e-01	k: 12278	n:30000
EHBP1   30000 perm   8 sec   (3957 perm/sec)   p_kst 4.092667e-01   p_cons 6.533333e-03   p_joint 5.513333e-02

Joint ci ratio: 9.300209e-02	ci left: 4.054389e-02	ci right 4.452287e-02	k: 1700	n:40000
Cons ci ratio: 2.461547e-01	ci left: 5.524664e-03	ci right 7.098301e-03	k: 251	n:40000
KS ci ratio: 2.353038e-02	ci left: 4.047750e-01	ci right 4.144381e-01	k: 16384	n:40000
EHBP1   40000 perm   11 sec   (3754 perm/sec)   p_kst 4.096000e-01   p_cons 6.275000e-03   p_joint 4.250000e-02

Joint ci ratio: 8.165639e-02	ci left: 4.225803e-02	ci right 4.587514e-02	k: 2202	n:50000
Cons ci ratio: 2.219476e-01	ci left: 5.511867e-03	ci right 6.906397e-03	k: 309	n:50000
KS ci ratio: 2.106382e-02	ci left: 4.048856e-01	ci right 4.135249e-01	k: 20460	n:50000
EHBP1   50000 perm   13 sec   (3722 perm/sec)   p_kst 4.092000e-01   p_cons 6.180000e-03   p_joint 4.404000e-02

Joint ci ratio: 8.703898e-02	ci left: 3.127492e-02	ci right 3.413718e-02	k: 1961	n:60000
Cons ci ratio: 2.009853e-01	ci left: 5.666711e-03	ci right 6.948414e-03	k: 377	n:60000
KS ci ratio: 1.918962e-02	ci left: 4.062437e-01	ci right 4.141316e-01	k: 24611	n:60000
EHBP1   60000 perm   16 sec   (3684 perm/sec)   p_kst 4.101833e-01   p_cons 6.283333e-03   p_joint 3.268333e-02

Joint ci ratio: 8.794316e-02	ci left: 2.638489e-02	ci right 2.882591e-02	k: 1931	n:70000
Cons ci ratio: 1.877983e-01	ci left: 5.604672e-03	ci right 6.779684e-03	k: 432	n:70000
KS ci ratio: 1.777715e-02	ci left: 4.062390e-01	ci right 4.135399e-01	k: 28692	n:70000
EHBP1   70000 perm   19 sec   (3610 perm/sec)   p_kst 4.098857e-01   p_cons 6.171429e-03   p_joint 2.758571e-02

Joint ci ratio: 9.111662e-02	ci left: 2.158119e-02	ci right 2.365363e-02	k: 1808	n:80000
Cons ci ratio: 1.969986e-01	ci left: 4.439786e-03	ci right 5.421645e-03	k: 393	n:80000
KS ci ratio: 1.666255e-02	ci left: 4.055028e-01	ci right 4.123288e-01	k: 32713	n:80000
EHBP1   80000 perm   23 sec   (3516 perm/sec)   p_kst 4.089125e-01   p_cons 4.912500e-03   p_joint 2.260000e-02

Joint ci ratio: 8.801093e-02	ci left: 2.061664e-02	ci right 2.252548e-02	k: 1940	n:90000
Cons ci ratio: 1.833063e-01	ci left: 4.592056e-03	ci right 5.529170e-03	k: 454	n:90000
KS ci ratio: 1.571619e-02	ci left: 4.054968e-01	ci right 4.119313e-01	k: 36784	n:90000
EHBP1   90000 perm   26 sec   (3483 perm/sec)   p_kst 4.087111e-01   p_cons 5.044444e-03   p_joint 2.155556e-02

Joint ci ratio: 8.703931e-02	ci left: 1.901400e-02	ci right 2.075400e-02	k: 1987	n:100000
Cons ci ratio: 1.734787e-01	ci left: 4.639208e-03	ci right 5.529871e-03	k: 507	n:100000
KS ci ratio: 1.519921e-02	ci left: 3.964123e-01	ci right 4.024935e-01	k: 39945	n:100000
EHBP1   100000 perm   29 sec   (3449 perm/sec)   p_kst 3.994500e-01   p_cons 5.070000e-03   p_joint 1.987000e-02

Joint ci ratio: 8.205193e-02	ci left: 1.949255e-02	ci right 2.116924e-02	k: 2235	n:110000
Cons ci ratio: 1.636198e-01	ci left: 4.766070e-03	ci right 5.623973e-03	k: 570	n:110000
KS ci ratio: 1.448930e-02	ci left: 3.966400e-01	ci right 4.024380e-01	k: 43949	n:110000
EHBP1   110000 perm   32 sec   (3416 perm/sec)   p_kst 3.995364e-01   p_cons 5.181818e-03   p_joint 2.031818e-02

Joint ci ratio: 7.921214e-02	ci left: 1.920717e-02	ci right 2.079948e-02	k: 2399	n:120000
Cons ci ratio: 1.561396e-01	ci left: 4.816910e-03	ci right 5.640613e-03	k: 626	n:120000
KS ci ratio: 1.386220e-02	ci left: 3.971183e-01	ci right 4.026699e-01	k: 47987	n:120000
EHBP1   120000 perm   36 sec   (3311 perm/sec)   p_kst 3.998917e-01   p_cons 5.216667e-03   p_joint 1.999167e-02

Joint ci ratio: 7.638989e-02	ci left: 1.909487e-02	ci right 2.061896e-02	k: 2580	n:130000
Cons ci ratio: 1.498202e-01	ci left: 4.845871e-03	ci right 5.637983e-03	k: 680	n:130000
KS ci ratio: 1.334659e-02	ci left: 3.962135e-01	ci right 4.015448e-01	k: 51854	n:130000
EHBP1   130000 perm   40 sec   (3278 perm/sec)   p_kst 3.988769e-01   p_cons 5.230769e-03   p_joint 1.984615e-02

Joint ci ratio: 7.401341e-02	ci left: 1.891533e-02	ci right 2.037609e-02	k: 2749	n:140000
Cons ci ratio: 1.451066e-01	ci left: 4.809301e-03	ci right 5.568558e-03	k: 725	n:140000
KS ci ratio: 1.285761e-02	ci left: 3.964406e-01	ci right 4.015779e-01	k: 55861	n:140000
EHBP1   140000 perm   44 sec   (3182 perm/sec)   p_kst 3.990071e-01   p_cons 5.178571e-03   p_joint 1.963571e-02

Joint ci ratio: 7.086160e-02	ci left: 1.928437e-02	ci right 2.070760e-02	k: 2998	n:150000
Cons ci ratio: 1.399926e-01	ci left: 4.835848e-03	ci right 5.570144e-03	k: 779	n:150000
KS ci ratio: 1.242131e-02	ci left: 3.965405e-01	ci right 4.015034e-01	k: 59853	n:150000
EHBP1   150000 perm   48 sec   (3151 perm/sec)   p_kst 3.990200e-01   p_cons 5.193333e-03   p_joint 1.998667e-02

Joint ci ratio: 6.959387e-02	ci left: 1.876663e-02	ci right 2.012587e-02	k: 3110	n:160000
Cons ci ratio: 1.347358e-01	ci left: 4.907806e-03	ci right 5.622802e-03	k: 841	n:160000
KS ci ratio: 1.201988e-02	ci left: 3.968990e-01	ci right 4.017047e-01	k: 63888	n:160000
EHBP1   160000 perm   51 sec   (3120 perm/sec)   p_kst 3.993000e-01   p_cons 5.256250e-03   p_joint 1.943750e-02

Joint ci ratio: 6.840172e-02	ci left: 1.830423e-02	ci right 1.960636e-02	k: 3221	n:170000
Cons ci ratio: 1.300298e-01	ci left: 4.971751e-03	ci right 5.668812e-03	k: 903	n:170000
KS ci ratio: 1.166114e-02	ci left: 3.969648e-01	ci right 4.016269e-01	k: 67880	n:170000
EHBP1   170000 perm   55 sec   (3074 perm/sec)   p_kst 3.992941e-01   p_cons 5.311765e-03   p_joint 1.894706e-02

Joint ci ratio: 6.186779e-02	ci left: 2.114126e-02	ci right 2.249642e-02	k: 3926	n:180000
Cons ci ratio: 1.257847e-01	ci left: 5.028977e-03	ci right 5.709326e-03	k: 965	n:180000
KS ci ratio: 1.133115e-02	ci left: 3.970919e-01	ci right 4.016225e-01	k: 71884	n:180000
EHBP1   180000 perm   59 sec   (3049 perm/sec)   p_kst 3.993556e-01   p_cons 5.361111e-03   p_joint 2.181111e-02

Joint ci ratio: 6.085995e-02	ci left: 2.071768e-02	ci right 2.202329e-02	k: 4059	n:190000
Cons ci ratio: 1.226518e-01	ci left: 5.019273e-03	ci right 5.680168e-03	k: 1015	n:190000
KS ci ratio: 1.101776e-02	ci left: 3.976384e-01	ci right 4.020489e-01	k: 75970	n:190000
EHBP1   190000 perm   63 sec   (3016 perm/sec)   p_kst 3.998421e-01   p_cons 5.342105e-03   p_joint 2.136316e-02

Joint ci ratio: 5.830031e-02	ci left: 2.146015e-02	ci right 2.275375e-02	k: 4420	n:200000
Cons ci ratio: 1.192368e-01	ci left: 5.054391e-03	ci right 5.700073e-03	k: 1074	n:200000
KS ci ratio: 1.074757e-02	ci left: 3.973024e-01	ci right 4.016005e-01	k: 79890	n:200000
EHBP1   200000 perm   67 sec   (2984 perm/sec)   p_kst 3.994500e-01   p_cons 5.370000e-03   p_joint 2.210000e-02

Joint ci ratio: 5.450569e-02	ci left: 2.338250e-02	ci right 2.469735e-02	k: 5047	n:210000
Cons ci ratio: 1.167146e-01	ci left: 5.030907e-03	ci right 5.659057e-03	k: 1121	n:210000
KS ci ratio: 1.049611e-02	ci left: 3.970093e-01	ci right 4.012030e-01	k: 83812	n:210000
EHBP1   210000 perm   71 sec   (2957 perm/sec)   p_kst 3.991048e-01   p_cons 5.338095e-03   p_joint 2.403333e-02

Joint ci ratio: 5.454726e-02	ci left: 2.231035e-02	ci right 2.356590e-02	k: 5045	n:220000
Cons ci ratio: 1.146421e-01	ci left: 4.983193e-03	ci right 5.593589e-03	k: 1162	n:220000
KS ci ratio: 1.026180e-02	ci left: 3.967303e-01	ci right 4.008269e-01	k: 87731	n:220000
EHBP1   220000 perm   75 sec   (2930 perm/sec)   p_kst 3.987773e-01   p_cons 5.281818e-03   p_joint 2.293182e-02

Joint ci ratio: 6.065682e-02	ci left: 1.729352e-02	ci right 1.837955e-02	k: 4101	n:230000
Cons ci ratio: 1.122087e-01	ci left: 4.981980e-03	ci right 5.578418e-03	k: 1213	n:230000
KS ci ratio: 1.003959e-02	ci left: 3.966155e-01	ci right 4.006218e-01	k: 91682	n:230000
EHBP1   230000 perm   79 sec   (2903 perm/sec)   p_kst 3.986174e-01   p_cons 5.273913e-03   p_joint 1.783043e-02

Joint ci ratio: 5.400238e-02	ci left: 2.090286e-02	ci right 2.206707e-02	k: 5155	n:240000
Cons ci ratio: 1.097497e-01	ci left: 4.997205e-03	ci right 5.581507e-03	k: 1268	n:240000
KS ci ratio: 9.830613e-03	ci left: 3.965404e-01	ci right 4.004620e-01	k: 95640	n:240000
EHBP1   240000 perm   84 sec   (2873 perm/sec)   p_kst 3.985000e-01   p_cons 5.283333e-03   p_joint 2.147917e-02

Joint ci ratio: 5.299119e-02	ci left: 2.085208e-02	ci right 2.199105e-02	k: 5354	n:250000
Cons ci ratio: 1.079797e-01	ci left: 4.960738e-03	ci right 5.530825e-03	k: 1310	n:250000
KS ci ratio: 9.629507e-03	ci left: 3.967039e-01	ci right 4.005464e-01	k: 99656	n:250000
EHBP1   250000 perm   88 sec   (2843 perm/sec)   p_kst 3.986240e-01   p_cons 5.240000e-03   p_joint 2.141600e-02

Joint ci ratio: 5.584842e-02	ci left: 1.807653e-02	ci right 1.911885e-02	k: 4834	n:260000
Cons ci ratio: 1.058220e-01	ci left: 4.972081e-03	ci right 5.531343e-03	k: 1364	n:260000
KS ci ratio: 9.443060e-03	ci left: 3.967134e-01	ci right 4.004812e-01	k: 103635	n:260000
EHBP1   260000 perm   92 sec   (2819 perm/sec)   p_kst 3.985962e-01   p_cons 5.246154e-03   p_joint 1.859231e-02

Joint ci ratio: 5.606314e-02	ci left: 1.728632e-02	ci right 1.828703e-02	k: 4801	n:270000
Cons ci ratio: 1.040469e-01	ci left: 4.957433e-03	ci right 5.505122e-03	k: 1411	n:270000
KS ci ratio: 9.267111e-03	ci left: 3.967192e-01	ci right 4.004164e-01	k: 107613	n:270000
EHBP1   270000 perm   97 sec   (2782 perm/sec)   p_kst 3.985667e-01   p_cons 5.225926e-03   p_joint 1.778148e-02

Joint ci ratio: 5.548470e-02	ci left: 1.702810e-02	ci right 1.800336e-02	k: 4903	n:280000
Cons ci ratio: 1.026416e-01	ci left: 4.916062e-03	ci right 5.451402e-03	k: 1450	n:280000
KS ci ratio: 9.093936e-03	ci left: 3.970784e-01	ci right 4.007094e-01	k: 111690	n:280000
EHBP1   280000 perm   102 sec   (2756 perm/sec)   p_kst 3.988929e-01   p_cons 5.178571e-03   p_joint 1.751071e-02

Joint ci ratio: 5.274592e-02	ci left: 1.819645e-02	ci right 1.918562e-02	k: 5419	n:290000
Cons ci ratio: 1.012234e-01	ci left: 4.884313e-03	ci right 5.408410e-03	k: 1491	n:290000
KS ci ratio: 8.938915e-03	ci left: 3.969414e-01	ci right 4.005089e-01	k: 115630	n:290000
EHBP1   290000 perm   106 sec   (2733 perm/sec)   p_kst 3.987241e-01   p_cons 5.141379e-03   p_joint 1.868621e-02

Joint ci ratio: 5.267859e-02	ci left: 1.764569e-02	ci right 1.860365e-02	k: 5436	n:300000
Cons ci ratio: 9.943944e-02	ci left: 4.896988e-03	ci right 5.412643e-03	k: 1545	n:300000
KS ci ratio: 8.783557e-03	ci left: 3.972503e-01	ci right 4.007583e-01	k: 119701	n:300000
EHBP1   300000 perm   111 sec   (2697 perm/sec)   p_kst 3.990033e-01   p_cons 5.150000e-03   p_joint 1.812000e-02

Outputting figure to mutsig2_images.part000000000055/EHBP1.7_3792_300000_0.399_0.00515_0.01812.png
                gene_name: EHBP1
               theta_stop: 0.099 
                    nperm: 300000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.0052 
      ci_cons_bounds_left: 0.0049 
     ci_cons_bounds_right: 0.0054 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 18 percent done.
EIF2C4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.132906e-02	ci left: 4.636729e-01	ci right 4.833426e-01	k: 4735	n:10000
Cons ci ratio: 5.005077e-02	ci left: 3.705722e-01	ci right 3.896977e-01	k: 3801	n:10000
KS ci ratio: 4.852468e-02	ci left: 3.852013e-01	ci right 4.044600e-01	k: 3948	n:10000
EIF2C4   10000 perm   2 sec   (5122 perm/sec)   p_kst 3.948000e-01   p_cons 3.801000e-01   p_joint 4.735000e-01

Outputting figure to mutsig2_images.part000000000055/EIF2C4.7_2658_10000_0.3948_0.3801_0.4735.png
                gene_name: EIF2C4
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 19 percent done.
EFHC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
Cons ci ratio: 1.309804e-01	ci left: 7.679184e-02	ci right 8.765300e-02	k: 821	n:10000
KS ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
EFHC1   10000 perm   2 sec   (4908 perm/sec)   p_kst 3.900000e-03   p_cons 8.210000e-02   p_joint 1.200000e-02

Joint ci ratio: 3.970395e-01	ci left: 3.889694e-03	ci right 5.858508e-03	k: 96	n:20000
Cons ci ratio: 8.827251e-02	ci left: 8.577461e-02	ci right 9.374513e-02	k: 1794	n:20000
KS ci ratio: 4.548356e-01	ci left: 2.862076e-03	ci right 4.587170e-03	k: 73	n:20000
EFHC1   20000 perm   5 sec   (4372 perm/sec)   p_kst 3.650000e-03   p_cons 8.970000e-02   p_joint 4.800000e-03

Joint ci ratio: 3.293414e-01	ci left: 3.927077e-03	ci right 5.504534e-03	k: 140	n:30000
Cons ci ratio: 7.212620e-02	ci left: 8.639129e-02	ci right 9.288844e-02	k: 2688	n:30000
KS ci ratio: 3.632525e-01	ci left: 3.165816e-03	ci right 4.599568e-03	k: 115	n:30000
EFHC1   30000 perm   7 sec   (4160 perm/sec)   p_kst 3.833333e-03   p_cons 8.960000e-02   p_joint 4.666667e-03

Joint ci ratio: 2.126320e-01	ci left: 7.528943e-03	ci right 9.343505e-03	k: 336	n:40000
Cons ci ratio: 6.308704e-02	ci left: 8.524124e-02	ci right 9.081874e-02	k: 3520	n:40000
KS ci ratio: 3.083131e-01	ci left: 3.405185e-03	ci right 4.668493e-03	k: 160	n:40000
EFHC1   40000 perm   10 sec   (4051 perm/sec)   p_kst 4.000000e-03   p_cons 8.800000e-02   p_joint 8.400000e-03

Joint ci ratio: 3.589144e-01	ci left: 1.953812e-03	ci right 2.825571e-03	k: 118	n:50000
Cons ci ratio: 5.656262e-02	ci left: 8.515570e-02	ci right 9.013230e-02	k: 4381	n:50000
KS ci ratio: 2.908406e-01	ci left: 3.094032e-03	ci right 4.164873e-03	k: 180	n:50000
EFHC1   50000 perm   13 sec   (3959 perm/sec)   p_kst 3.600000e-03   p_cons 8.762000e-02   p_joint 2.360000e-03

Joint ci ratio: 3.786195e-01	ci left: 1.446622e-03	ci right 2.136337e-03	k: 106	n:60000
Cons ci ratio: 5.158821e-02	ci left: 8.551424e-02	ci right 9.005906e-02	k: 5266	n:60000
KS ci ratio: 2.637992e-01	ci left: 3.183279e-03	ci right 4.165693e-03	k: 219	n:60000
EFHC1   60000 perm   15 sec   (3885 perm/sec)   p_kst 3.650000e-03   p_cons 8.776667e-02   p_joint 1.766667e-03

Joint ci ratio: 2.243371e-01	ci left: 3.855743e-03	ci right 4.843181e-03	k: 303	n:70000
Cons ci ratio: 4.787613e-02	ci left: 8.530370e-02	ci right 8.950201e-02	k: 6117	n:70000
KS ci ratio: 2.464902e-01	ci left: 3.156457e-03	ci right 4.056892e-03	k: 251	n:70000
EFHC1   70000 perm   18 sec   (3828 perm/sec)   p_kst 3.585714e-03   p_cons 8.738571e-02   p_joint 4.328571e-03

Joint ci ratio: 2.278086e-01	ci left: 3.267529e-03	ci right 4.119088e-03	k: 294	n:80000
Cons ci ratio: 4.481567e-02	ci left: 8.532797e-02	ci right 8.925202e-02	k: 6982	n:80000
KS ci ratio: 2.313783e-01	ci left: 3.161479e-03	ci right 4.000156e-03	k: 285	n:80000
EFHC1   80000 perm   21 sec   (3768 perm/sec)   p_kst 3.562500e-03   p_cons 8.727500e-02   p_joint 3.675000e-03

Joint ci ratio: 1.005370e-01	ci left: 1.577532e-02	ci right 1.745604e-02	k: 1494	n:90000
Cons ci ratio: 4.234980e-02	ci left: 8.507845e-02	ci right 8.877044e-02	k: 7822	n:90000
KS ci ratio: 2.163811e-01	ci left: 3.240251e-03	ci right 4.036714e-03	k: 326	n:90000
EFHC1   90000 perm   24 sec   (3701 perm/sec)   p_kst 3.622222e-03   p_cons 8.691111e-02   p_joint 1.660000e-02

Joint ci ratio: 9.789862e-02	ci left: 1.500690e-02	ci right 1.656137e-02	k: 1577	n:100000
Cons ci ratio: 4.019739e-02	ci left: 8.509175e-02	ci right 8.859226e-02	k: 8683	n:100000
KS ci ratio: 2.056564e-01	ci left: 3.247740e-03	ci right 4.001502e-03	k: 361	n:100000
EFHC1   100000 perm   27 sec   (3638 perm/sec)   p_kst 3.610000e-03   p_cons 8.683000e-02   p_joint 1.577000e-02

Joint ci ratio: 1.036853e-01	ci left: 1.216175e-02	ci right 1.350049e-02	k: 1410	n:110000
Cons ci ratio: 3.830126e-02	ci left: 8.527777e-02	ci right 8.861678e-02	k: 9563	n:110000
KS ci ratio: 1.978894e-01	ci left: 3.202804e-03	ci right 3.914676e-03	k: 390	n:110000
EFHC1   110000 perm   30 sec   (3622 perm/sec)   p_kst 3.545455e-03   p_cons 8.693636e-02   p_joint 1.281818e-02

Joint ci ratio: 1.026069e-01	ci left: 1.139970e-02	ci right 1.264071e-02	k: 1441	n:120000
Cons ci ratio: 3.665808e-02	ci left: 8.540296e-02	ci right 8.860037e-02	k: 10439	n:120000
KS ci ratio: 1.907129e-01	ci left: 3.173740e-03	ci right 3.850604e-03	k: 420	n:120000
EFHC1   120000 perm   33 sec   (3587 perm/sec)   p_kst 3.500000e-03   p_cons 8.699167e-02   p_joint 1.200833e-02

Joint ci ratio: 1.050378e-01	ci left: 1.004291e-02	ci right 1.116370e-02	k: 1377	n:130000
Cons ci ratio: 3.517059e-02	ci left: 8.568700e-02	ci right 8.876221e-02	k: 11338	n:130000
KS ci ratio: 1.844698e-01	ci left: 3.142203e-03	ci right 3.787950e-03	k: 449	n:130000
EFHC1   130000 perm   37 sec   (3547 perm/sec)   p_kst 3.453846e-03   p_cons 8.721538e-02   p_joint 1.059231e-02

Joint ci ratio: 1.028403e-01	ci left: 9.742908e-03	ci right 1.080609e-02	k: 1437	n:140000
Cons ci ratio: 3.394949e-02	ci left: 8.547197e-02	ci right 8.843087e-02	k: 12172	n:140000
KS ci ratio: 1.775053e-01	ci left: 3.163259e-03	ci right 3.786156e-03	k: 485	n:140000
EFHC1   140000 perm   40 sec   (3484 perm/sec)   p_kst 3.464286e-03   p_cons 8.694286e-02   p_joint 1.026429e-02

Joint ci ratio: 1.229297e-01	ci left: 6.319237e-03	ci right 7.153334e-03	k: 1009	n:150000
Cons ci ratio: 3.285700e-02	ci left: 8.524093e-02	ci right 8.809507e-02	k: 12999	n:150000
KS ci ratio: 1.637338e-01	ci left: 3.494928e-03	ci right 4.124491e-03	k: 570	n:150000
EFHC1   150000 perm   44 sec   (3427 perm/sec)   p_kst 3.800000e-03   p_cons 8.666000e-02   p_joint 6.726667e-03

Joint ci ratio: 1.264687e-01	ci left: 5.591122e-03	ci right 6.351947e-03	k: 954	n:160000
Cons ci ratio: 3.183335e-02	ci left: 8.518905e-02	ci right 8.795095e-02	k: 13850	n:160000
KS ci ratio: 1.589368e-01	ci left: 3.486412e-03	ci right 4.094286e-03	k: 605	n:160000
EFHC1   160000 perm   47 sec   (3388 perm/sec)   p_kst 3.781250e-03   p_cons 8.656250e-02   p_joint 5.962500e-03

Joint ci ratio: 1.262917e-01	ci left: 5.279267e-03	ci right 5.996574e-03	k: 957	n:170000
Cons ci ratio: 3.084240e-02	ci left: 8.543657e-02	ci right 8.811872e-02	k: 14751	n:170000
KS ci ratio: 1.540563e-01	ci left: 3.501760e-03	ci right 4.091831e-03	k: 644	n:170000
EFHC1   170000 perm   51 sec   (3359 perm/sec)   p_kst 3.788235e-03   p_cons 8.677059e-02   p_joint 5.629412e-03

Joint ci ratio: 1.253938e-01	ci left: 5.061268e-03	ci right 5.743699e-03	k: 971	n:180000
Cons ci ratio: 3.005754e-02	ci left: 8.503424e-02	ci right 8.763465e-02	k: 15539	n:180000
KS ci ratio: 1.504854e-01	ci left: 3.472875e-03	ci right 4.043291e-03	k: 675	n:180000
EFHC1   180000 perm   54 sec   (3320 perm/sec)   p_kst 3.750000e-03   p_cons 8.632778e-02   p_joint 5.394444e-03

Joint ci ratio: 2.022275e-01	ci left: 1.774126e-03	ci right 2.178154e-03	k: 374	n:190000
Cons ci ratio: 2.925326e-02	ci left: 8.508288e-02	ci right 8.761397e-02	k: 16405	n:190000
KS ci ratio: 1.455083e-01	ci left: 3.528309e-03	ci right 4.086998e-03	k: 722	n:190000
EFHC1   190000 perm   58 sec   (3289 perm/sec)   p_kst 3.800000e-03   p_cons 8.634211e-02   p_joint 1.968421e-03

Joint ci ratio: 2.075741e-01	ci left: 1.595277e-03	ci right 1.969400e-03	k: 355	n:200000
Cons ci ratio: 2.850666e-02	ci left: 8.514735e-02	ci right 8.761465e-02	k: 17275	n:200000
KS ci ratio: 1.413635e-01	ci left: 3.559182e-03	ci right 4.105354e-03	k: 765	n:200000
EFHC1   200000 perm   61 sec   (3258 perm/sec)   p_kst 3.825000e-03   p_cons 8.637500e-02   p_joint 1.775000e-03

Joint ci ratio: 1.538732e-01	ci left: 2.843840e-03	ci right 3.322420e-03	k: 646	n:210000
Cons ci ratio: 2.780607e-02	ci left: 8.525375e-02	ci right 8.766244e-02	k: 18155	n:210000
KS ci ratio: 1.381551e-01	ci left: 3.555131e-03	ci right 4.087280e-03	k: 801	n:210000
EFHC1   210000 perm   65 sec   (3211 perm/sec)   p_kst 3.814286e-03   p_cons 8.645238e-02   p_joint 3.076190e-03

Joint ci ratio: 1.514386e-01	ci left: 2.806379e-03	ci right 3.270504e-03	k: 667	n:220000
Cons ci ratio: 2.717582e-02	ci left: 8.522917e-02	ci right 8.758174e-02	k: 19008	n:220000
KS ci ratio: 1.354807e-01	ci left: 3.534008e-03	ci right 4.051929e-03	k: 833	n:220000
EFHC1   220000 perm   69 sec   (3171 perm/sec)   p_kst 3.786364e-03   p_cons 8.640000e-02   p_joint 3.031818e-03

Joint ci ratio: 1.522507e-01	ci left: 2.655068e-03	ci right 3.096738e-03	k: 660	n:230000
Cons ci ratio: 2.654854e-02	ci left: 8.543203e-02	ci right 8.773493e-02	k: 19913	n:230000
KS ci ratio: 1.328019e-01	ci left: 3.523219e-03	ci right 4.028544e-03	k: 867	n:230000
EFHC1   230000 perm   73 sec   (3135 perm/sec)   p_kst 3.769565e-03   p_cons 8.657826e-02   p_joint 2.869565e-03

Joint ci ratio: 1.585140e-01	ci left: 2.340169e-03	ci right 2.746993e-03	k: 609	n:240000
Cons ci ratio: 2.599629e-02	ci left: 8.541558e-02	ci right 8.766942e-02	k: 20769	n:240000
KS ci ratio: 1.307863e-01	ci left: 3.485204e-03	ci right 3.976901e-03	k: 894	n:240000
EFHC1   240000 perm   78 sec   (3095 perm/sec)   p_kst 3.725000e-03   p_cons 8.653750e-02   p_joint 2.537500e-03

Joint ci ratio: 1.634294e-01	ci left: 2.108341e-03	ci right 2.487346e-03	k: 573	n:250000
Cons ci ratio: 2.545781e-02	ci left: 8.552021e-02	ci right 8.772939e-02	k: 21655	n:250000
KS ci ratio: 1.280951e-01	ci left: 3.492875e-03	ci right 3.974743e-03	k: 932	n:250000
EFHC1   250000 perm   81 sec   (3069 perm/sec)   p_kst 3.728000e-03   p_cons 8.662000e-02   p_joint 2.292000e-03

Joint ci ratio: 1.255634e-01	ci left: 3.500051e-03	ci right 3.972656e-03	k: 970	n:260000
Cons ci ratio: 2.494964e-02	ci left: 8.562871e-02	ci right 8.779590e-02	k: 22544	n:260000
KS ci ratio: 1.258238e-01	ci left: 3.485149e-03	ci right 3.956790e-03	k: 966	n:260000
EFHC1   260000 perm   86 sec   (3040 perm/sec)   p_kst 3.715385e-03   p_cons 8.670769e-02   p_joint 3.730769e-03

Joint ci ratio: 1.244200e-01	ci left: 3.434995e-03	ci right 3.894279e-03	k: 988	n:270000
Cons ci ratio: 2.447244e-02	ci left: 8.571853e-02	ci right 8.784591e-02	k: 23430	n:270000
KS ci ratio: 1.239180e-01	ci left: 3.463707e-03	ci right 3.924825e-03	k: 996	n:270000
EFHC1   270000 perm   90 sec   (3012 perm/sec)   p_kst 3.688889e-03   p_cons 8.677778e-02   p_joint 3.659259e-03

Joint ci ratio: 1.225160e-01	ci left: 3.419610e-03	ci right 3.869332e-03	k: 1019	n:280000
Cons ci ratio: 2.402433e-02	ci left: 8.578453e-02	ci right 8.787403e-02	k: 24311	n:280000
KS ci ratio: 1.223956e-01	ci left: 3.426534e-03	ci right 3.876693e-03	k: 1021	n:280000
EFHC1   280000 perm   94 sec   (2983 perm/sec)   p_kst 3.646429e-03   p_cons 8.682500e-02   p_joint 3.639286e-03

Joint ci ratio: 1.207544e-01	ci left: 3.401991e-03	ci right 3.842503e-03	k: 1049	n:290000
Cons ci ratio: 2.362256e-02	ci left: 8.569540e-02	ci right 8.774735e-02	k: 25148	n:290000
KS ci ratio: 1.206392e-01	ci left: 3.408680e-03	ci right 3.849607e-03	k: 1051	n:290000
EFHC1   290000 perm   98 sec   (2955 perm/sec)   p_kst 3.624138e-03   p_cons 8.671724e-02   p_joint 3.617241e-03

Joint ci ratio: 1.065674e-01	ci left: 4.250646e-03	ci right 4.732337e-03	k: 1346	n:300000
Cons ci ratio: 2.322904e-02	ci left: 8.568876e-02	ci right 8.770590e-02	k: 26008	n:300000
KS ci ratio: 1.188460e-01	ci left: 3.398528e-03	ci right 3.831149e-03	k: 1083	n:300000
EFHC1   300000 perm   102 sec   (2927 perm/sec)   p_kst 3.610000e-03   p_cons 8.669333e-02   p_joint 4.486667e-03

Joint ci ratio: 9.411940e-02	ci left: 5.302524e-03	ci right 5.829365e-03	k: 1724	n:310000
Cons ci ratio: 2.285501e-02	ci left: 8.567960e-02	ci right 8.766362e-02	k: 26867	n:310000
KS ci ratio: 1.170253e-01	ci left: 3.395339e-03	ci right 3.820475e-03	k: 1117	n:310000
EFHC1   310000 perm   107 sec   (2898 perm/sec)   p_kst 3.603226e-03   p_cons 8.666774e-02   p_joint 5.561290e-03

Joint ci ratio: 9.265399e-02	ci left: 5.304681e-03	ci right 5.823085e-03	k: 1779	n:320000
Cons ci ratio: 2.248119e-02	ci left: 8.579251e-02	ci right 8.774623e-02	k: 27765	n:320000
KS ci ratio: 1.154368e-01	ci left: 3.383292e-03	ci right 3.800777e-03	k: 1148	n:320000
EFHC1   320000 perm   111 sec   (2872 perm/sec)   p_kst 3.587500e-03   p_cons 8.676562e-02   p_joint 5.559375e-03

Joint ci ratio: 8.522784e-02	ci left: 6.098124e-03	ci right 6.643932e-03	k: 2101	n:330000
Cons ci ratio: 2.213189e-02	ci left: 8.585058e-02	ci right 8.777486e-02	k: 28647	n:330000
KS ci ratio: 1.138145e-01	ci left: 3.377900e-03	ci right 3.788469e-03	k: 1181	n:330000
EFHC1   330000 perm   116 sec   (2846 perm/sec)   p_kst 3.578788e-03   p_cons 8.680909e-02   p_joint 6.366667e-03

Joint ci ratio: 8.783843e-02	ci left: 5.567640e-03	ci right 6.082014e-03	k: 1979	n:340000
Cons ci ratio: 2.177658e-02	ci left: 8.606350e-02	ci right 8.796120e-02	k: 29583	n:340000
KS ci ratio: 1.121198e-01	ci left: 3.381441e-03	ci right 3.785916e-03	k: 1217	n:340000
EFHC1   340000 perm   121 sec   (2820 perm/sec)   p_kst 3.579412e-03   p_cons 8.700882e-02   p_joint 5.820588e-03

Joint ci ratio: 8.784579e-02	ci left: 5.408546e-03	ci right 5.908264e-03	k: 1979	n:350000
Cons ci ratio: 2.146482e-02	ci left: 8.606545e-02	ci right 8.793568e-02	k: 30449	n:350000
KS ci ratio: 1.102783e-01	ci left: 3.398715e-03	ci right 3.798145e-03	k: 1258	n:350000
EFHC1   350000 perm   125 sec   (2794 perm/sec)   p_kst 3.594286e-03   p_cons 8.699714e-02   p_joint 5.654286e-03

Joint ci ratio: 8.652256e-02	ci left: 5.424060e-03	ci right 5.917281e-03	k: 2040	n:360000
Cons ci ratio: 2.116312e-02	ci left: 8.608959e-02	ci right 8.793373e-02	k: 31323	n:360000
KS ci ratio: 1.084827e-01	ci left: 3.417783e-03	ci right 3.812496e-03	k: 1300	n:360000
EFHC1   360000 perm   131 sec   (2757 perm/sec)   p_kst 3.611111e-03   p_cons 8.700833e-02   p_joint 5.666667e-03

Joint ci ratio: 7.864292e-02	ci left: 6.407858e-03	ci right 6.935048e-03	k: 2467	n:370000
Cons ci ratio: 2.087131e-02	ci left: 8.613143e-02	ci right 8.795072e-02	k: 32204	n:370000
KS ci ratio: 1.069321e-01	ci left: 3.425347e-03	ci right 3.814923e-03	k: 1338	n:370000
EFHC1   370000 perm   136 sec   (2729 perm/sec)   p_kst 3.616216e-03   p_cons 8.703784e-02   p_joint 6.667568e-03

Joint ci ratio: 7.931572e-02	ci left: 6.133432e-03	ci right 6.642560e-03	k: 2426	n:380000
Cons ci ratio: 2.059363e-02	ci left: 8.615289e-02	ci right 8.794815e-02	k: 33078	n:380000
KS ci ratio: 1.057161e-01	ci left: 3.414615e-03	ci right 3.798279e-03	k: 1369	n:380000
EFHC1   380000 perm   140 sec   (2705 perm/sec)   p_kst 3.602632e-03   p_cons 8.704737e-02   p_joint 6.384211e-03

Joint ci ratio: 7.870462e-02	ci left: 6.071668e-03	ci right 6.571607e-03	k: 2464	n:390000
Cons ci ratio: 2.033101e-02	ci left: 8.614023e-02	ci right 8.791206e-02	k: 33939	n:390000
KS ci ratio: 1.044658e-01	ci left: 3.409451e-03	ci right 3.787727e-03	k: 1402	n:390000
EFHC1   390000 perm   145 sec   (2681 perm/sec)   p_kst 3.594872e-03   p_cons 8.702308e-02   p_joint 6.317949e-03

Joint ci ratio: 7.785735e-02	ci left: 6.052231e-03	ci right 6.544962e-03	k: 2518	n:400000
Cons ci ratio: 2.007882e-02	ci left: 8.612337e-02	ci right 8.787262e-02	k: 34798	n:400000
KS ci ratio: 1.032228e-01	ci left: 3.407007e-03	ci right 3.780241e-03	k: 1436	n:400000
EFHC1   400000 perm   151 sec   (2651 perm/sec)   p_kst 3.590000e-03   p_cons 8.699500e-02   p_joint 6.295000e-03

Joint ci ratio: 7.712742e-02	ci left: 6.019416e-03	ci right 6.504675e-03	k: 2566	n:410000
Cons ci ratio: 1.983274e-02	ci left: 8.613173e-02	ci right 8.785947e-02	k: 35667	n:410000
KS ci ratio: 1.020580e-01	ci left: 3.402331e-03	ci right 3.770593e-03	k: 1469	n:410000
EFHC1   410000 perm   156 sec   (2627 perm/sec)   p_kst 3.582927e-03   p_cons 8.699268e-02   p_joint 6.258537e-03

Joint ci ratio: 7.668364e-02	ci left: 5.946143e-03	ci right 6.422613e-03	k: 2596	n:420000
Cons ci ratio: 1.959961e-02	ci left: 8.610664e-02	ci right 8.781335e-02	k: 36522	n:420000
KS ci ratio: 1.003968e-01	ci left: 3.435039e-03	ci right 3.800433e-03	k: 1518	n:420000
EFHC1   420000 perm   161 sec   (2602 perm/sec)   p_kst 3.614286e-03   p_cons 8.695714e-02   p_joint 6.180952e-03

Joint ci ratio: 7.230851e-02	ci left: 6.542829e-03	ci right 7.035945e-03	k: 2918	n:430000
Cons ci ratio: 1.936855e-02	ci left: 8.613146e-02	ci right 8.781830e-02	k: 37398	n:430000
KS ci ratio: 9.916389e-02	ci left: 3.441321e-03	ci right 3.802627e-03	k: 1556	n:430000
EFHC1   430000 perm   167 sec   (2580 perm/sec)   p_kst 3.618605e-03   p_cons 8.697209e-02   p_joint 6.786047e-03

Outputting figure to mutsig2_images.part000000000055/EFHC1.6_1977_430000_0.0036186_0.086972_0.006786.png
                gene_name: EFHC1
               theta_stop: 0.099 
                    nperm: 430000 
                     p_ks: 0.0036 
        ci_ks_bounds_left: 0.0034 
       ci_ks_bounds_right: 0.0038 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.0068 
     ci_joint_bounds_left: 0.0065 
    ci_joint_bounds_right: 0.0070 

Current progress: 21 percent done.
EFTUD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.336195e-02	ci left: 7.291621e-01	ci right 7.464992e-01	k: 7379	n:10000
KS ci ratio: 2.226974e-02	ci left: 7.474583e-01	ci right 7.643924e-01	k: 7560	n:10000
EFTUD2   10000 perm   2 sec   (5112 perm/sec)   p_kst 7.560000e-01   p_cons 7.379000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EFTUD2.6_3027_10000_0.756_0.7379_1.png
                gene_name: EFTUD2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
EGFL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.604833e-01	ci left: 5.176584e-02	ci right 6.089478e-02	k: 562	n:10000
Cons ci ratio: 4.889213e-02	ci left: 3.816178e-01	ci right 4.008456e-01	k: 3912	n:10000
KS ci ratio: 2.326663e-01	ci left: 2.438298e-02	ci right 3.089610e-02	k: 275	n:10000
EGFL6   10000 perm   2 sec   (5166 perm/sec)   p_kst 2.750000e-02   p_cons 3.912000e-01   p_joint 5.620000e-02

Joint ci ratio: 7.744556e-02	ci left: 1.091353e-01	ci right 1.179774e-01	k: 2270	n:20000
Cons ci ratio: 3.351739e-02	ci left: 3.992828e-01	ci right 4.129445e-01	k: 8122	n:20000
KS ci ratio: 1.569380e-01	ci left: 2.787170e-02	ci right 3.266616e-02	k: 604	n:20000
EGFL6   20000 perm   4 sec   (4680 perm/sec)   p_kst 3.020000e-02   p_cons 4.061000e-01   p_joint 1.135000e-01

Joint ci ratio: 9.168391e-02	ci left: 5.479416e-02	ci right 6.009195e-02	k: 1722	n:30000
Cons ci ratio: 2.729597e-02	ci left: 4.017992e-01	ci right 4.129521e-01	k: 12221	n:30000
KS ci ratio: 1.325343e-01	ci left: 2.645263e-02	ci right 3.023945e-02	k: 849	n:30000
EGFL6   30000 perm   7 sec   (4511 perm/sec)   p_kst 2.830000e-02   p_cons 4.073667e-01   p_joint 5.740000e-02

Joint ci ratio: 8.368618e-02	ci left: 4.981976e-02	ci right 5.419557e-02	k: 2079	n:40000
Cons ci ratio: 2.382848e-02	ci left: 3.987118e-01	ci right 4.083522e-01	k: 16141	n:40000
KS ci ratio: 1.123204e-01	ci left: 2.788788e-02	ci right 3.123088e-02	k: 1181	n:40000
EGFL6   40000 perm   9 sec   (4404 perm/sec)   p_kst 2.952500e-02   p_cons 4.035250e-01   p_joint 5.197500e-02

Joint ci ratio: 8.104258e-02	ci left: 4.288558e-02	ci right 4.652752e-02	k: 2234	n:50000
Cons ci ratio: 2.173700e-02	ci left: 3.897931e-01	ci right 3.983792e-01	k: 19704	n:50000
KS ci ratio: 9.951241e-02	ci left: 2.860017e-02	ci right 3.161472e-02	k: 1504	n:50000
EGFL6   50000 perm   12 sec   (4318 perm/sec)   p_kst 3.008000e-02   p_cons 3.940800e-01   p_joint 4.468000e-02

Outputting figure to mutsig2_images.part000000000055/EGFL6.6_1713_50000_0.03008_0.39408_0.04468.png
                gene_name: EGFL6
               theta_stop: 0.100 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 25 percent done.
EIF2AK1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.503264e-02	ci left: 5.460965e-01	ci right 5.656709e-01	k: 5559	n:10000
Cons ci ratio: 5.379860e-02	ci left: 3.373679e-01	ci right 3.561214e-01	k: 3467	n:10000
KS ci ratio: 4.640851e-02	ci left: 4.066140e-01	ci right 4.260348e-01	k: 4163	n:10000
EIF2AK1   10000 perm   2 sec   (4980 perm/sec)   p_kst 4.163000e-01   p_cons 3.467000e-01   p_joint 5.559000e-01

Outputting figure to mutsig2_images.part000000000055/EIF2AK1.5_1953_10000_0.4163_0.3467_0.5559.png
                gene_name: EIF2AK1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 26 percent done.
EIF2AK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.195184e-02	ci left: 2.769584e-01	ci right 2.947665e-01	k: 2858	n:10000
Cons ci ratio: 1.020829e-01	ci left: 1.219021e-01	ci right 1.351151e-01	k: 1284	n:10000
KS ci ratio: 3.702810e-02	ci left: 5.185589e-01	ci right 5.382245e-01	k: 5284	n:10000
EIF2AK4   10000 perm   3 sec   (3988 perm/sec)   p_kst 5.284000e-01   p_cons 1.284000e-01   p_joint 2.858000e-01

Joint ci ratio: 4.479819e-02	ci left: 2.706070e-01	ci right 2.830579e-01	k: 5536	n:20000
Cons ci ratio: 7.167364e-02	ci left: 1.254174e-01	ci right 1.347904e-01	k: 2601	n:20000
KS ci ratio: 2.613477e-02	ci left: 5.224036e-01	ci right 5.362879e-01	k: 10587	n:20000
EIF2AK4   20000 perm   6 sec   (3581 perm/sec)   p_kst 5.293500e-01   p_cons 1.300500e-01   p_joint 2.768000e-01

Outputting figure to mutsig2_images.part000000000055/EIF2AK4.6_5106_20000_0.52935_0.13005_0.2768.png
                gene_name: EIF2AK4
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 28 percent done.
EIF2C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.738033e-02	ci left: 3.089757e-01	ci right 3.273303e-01	k: 3181	n:10000
KS ci ratio: 2.094610e-02	ci left: 7.696229e-01	ci right 7.860149e-01	k: 7779	n:10000
EIF2C3   10000 perm   2 sec   (5165 perm/sec)   p_kst 7.779000e-01   p_cons 3.181000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EIF2C3.6_2659_10000_0.7779_0.3181_1.png
                gene_name: EIF2C3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
EFHC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.925109e-02	ci left: 7.978066e-01	ci right 8.134149e-01	k: 8057	n:10000
Cons ci ratio: 2.514891e-02	ci left: 6.993822e-01	ci right 7.172963e-01	k: 7084	n:10000
KS ci ratio: 3.787610e-02	ci left: 5.072521e-01	ci right 5.269379e-01	k: 5171	n:10000
EFHC2   10000 perm   2 sec   (5318 perm/sec)   p_kst 5.171000e-01   p_cons 7.084000e-01   p_joint 8.057000e-01

Outputting figure to mutsig2_images.part000000000055/EFHC2.5_2310_10000_0.5171_0.7084_0.8057.png
                gene_name: EFHC2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 32 percent done.
EFNA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.328022e-02	ci left: 3.417393e-01	ci right 3.605475e-01	k: 3511	n:10000
Cons ci ratio: 8.576435e-02	ci left: 1.653377e-01	ci right 1.802534e-01	k: 1727	n:10000
KS ci ratio: 4.327738e-02	ci left: 4.408137e-01	ci right 4.604151e-01	k: 4506	n:10000
EFNA5   10000 perm   2 sec   (5548 perm/sec)   p_kst 4.506000e-01   p_cons 1.727000e-01   p_joint 3.511000e-01

Outputting figure to mutsig2_images.part000000000055/EFNA5.5_707_10000_0.4506_0.1727_0.3511.png
                gene_name: EFNA5
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 33 percent done.
EHD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.404691e-02	ci left: 2.107297e-01	ci right 2.270344e-01	k: 2188	n:10000
Cons ci ratio: 2.123674e-02	ci left: 7.647622e-01	ci right 7.812784e-01	k: 7731	n:10000
KS ci ratio: 9.237174e-02	ci left: 1.455058e-01	ci right 1.596972e-01	k: 1525	n:10000
EHD2   10000 perm   2 sec   (6011 perm/sec)   p_kst 1.525000e-01   p_cons 7.731000e-01   p_joint 2.188000e-01

Outputting figure to mutsig2_images.part000000000055/EHD2.5_1652_10000_0.1525_0.7731_0.2188.png
                gene_name: EHD2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 35 percent done.
EID3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.331531e-02	ci left: 3.414412e-01	ci right 3.602457e-01	k: 3508	n:10000
Cons ci ratio: 1.217655e-01	ci left: 8.815461e-02	ci right 9.968320e-02	k: 938	n:10000
KS ci ratio: 7.724826e-03	ci left: 9.587987e-01	ci right 9.663288e-01	k: 9627	n:10000
EID3   10000 perm   2 sec   (5969 perm/sec)   p_kst 9.627000e-01   p_cons 9.380000e-02   p_joint 3.508000e-01

Joint ci ratio: 3.645828e-02	ci left: 3.595678e-01	ci right 3.729711e-01	k: 7325	n:20000
Cons ci ratio: 8.137980e-02	ci left: 9.970398e-02	ci right 1.082116e-01	k: 2078	n:20000
KS ci ratio: 5.459175e-03	ci left: 9.599806e-01	ci right 9.652838e-01	k: 19254	n:20000
EID3   20000 perm   4 sec   (5363 perm/sec)   p_kst 9.627000e-01   p_cons 1.039000e-01   p_joint 3.662500e-01

Outputting figure to mutsig2_images.part000000000055/EID3.5_1006_20000_0.9627_0.1039_0.36625.png
                gene_name: EID3
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 37 percent done.
EIF2B5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.994303e-02	ci left: 7.863438e-01	ci right 8.022844e-01	k: 7944	n:10000
Cons ci ratio: 4.058238e-02	ci left: 4.727624e-01	ci right 4.924478e-01	k: 4826	n:10000
KS ci ratio: 2.373042e-02	ci left: 7.230002e-01	ci right 7.404646e-01	k: 7318	n:10000
EIF2B5   10000 perm   2 sec   (5431 perm/sec)   p_kst 7.318000e-01   p_cons 4.826000e-01   p_joint 7.944000e-01

Outputting figure to mutsig2_images.part000000000055/EIF2B5.5_2230_10000_0.7318_0.4826_0.7944.png
                gene_name: EIF2B5
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 39 percent done.
EFCAB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.607365e-02	ci left: 8.490671e-01	ci right 8.629248e-01	k: 8561	n:10000
Cons ci ratio: 1.189849e-02	ci left: 9.100826e-01	ci right 9.210739e-01	k: 9157	n:10000
KS ci ratio: 2.553281e-02	ci left: 6.930285e-01	ci right 7.110537e-01	k: 7021	n:10000
EFCAB7   10000 perm   2 sec   (5266 perm/sec)   p_kst 7.021000e-01   p_cons 9.157000e-01   p_joint 8.561000e-01

Outputting figure to mutsig2_images.part000000000055/EFCAB7.4_1942_10000_0.7021_0.9157_0.8561.png
                gene_name: EFCAB7
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 40 percent done.
EIF2C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.358092e-01	ci left: 7.165494e-02	ci right 8.219310e-02	k: 768	n:10000
Cons ci ratio: 3.313660e-01	ci left: 1.151417e-02	ci right 1.617538e-02	k: 137	n:10000
KS ci ratio: 5.174931e-02	ci left: 3.550575e-01	ci right 3.740215e-01	k: 3645	n:10000
EIF2C2   10000 perm   2 sec   (5255 perm/sec)   p_kst 3.645000e-01   p_cons 1.370000e-02   p_joint 7.680000e-02

Joint ci ratio: 1.435362e-01	ci left: 3.336431e-02	ci right 3.857172e-02	k: 718	n:20000
Cons ci ratio: 2.293135e-01	ci left: 1.274765e-02	ci right 1.609571e-02	k: 287	n:20000
KS ci ratio: 3.655664e-02	ci left: 3.583229e-01	ci right 3.717164e-01	k: 7300	n:20000
EIF2C2   20000 perm   5 sec   (4437 perm/sec)   p_kst 3.650000e-01   p_cons 1.435000e-02   p_joint 3.590000e-02

Joint ci ratio: 9.745865e-02	ci left: 4.866769e-02	ci right 5.368635e-02	k: 1534	n:30000
Cons ci ratio: 2.183043e-01	ci left: 9.472069e-03	ci right 1.182415e-02	k: 318	n:30000
KS ci ratio: 2.891501e-02	ci left: 3.743697e-01	ci right 3.853869e-01	k: 11396	n:30000
EIF2C2   30000 perm   7 sec   (4382 perm/sec)   p_kst 3.798667e-01   p_cons 1.060000e-02   p_joint 5.113333e-02

Joint ci ratio: 9.042302e-02	ci left: 4.284229e-02	ci right 4.692411e-02	k: 1794	n:40000
Cons ci ratio: 1.884616e-01	ci left: 9.691048e-03	ci right 1.173092e-02	k: 427	n:40000
KS ci ratio: 2.505839e-02	ci left: 3.747908e-01	ci right 3.843267e-01	k: 15182	n:40000
EIF2C2   40000 perm   9 sec   (4324 perm/sec)   p_kst 3.795500e-01   p_cons 1.067500e-02   p_joint 4.485000e-02

Joint ci ratio: 8.175349e-02	ci left: 4.215999e-02	ci right 4.577320e-02	k: 2197	n:50000
Cons ci ratio: 1.706741e-01	ci left: 9.548446e-03	ci right 1.134907e-02	k: 521	n:50000
KS ci ratio: 2.252250e-02	ci left: 3.730087e-01	ci right 3.815255e-01	k: 18863	n:50000
EIF2C2   50000 perm   12 sec   (4266 perm/sec)   p_kst 3.772600e-01   p_cons 1.042000e-02   p_joint 4.394000e-02

Joint ci ratio: 6.963431e-02	ci left: 4.841709e-02	ci right 5.192658e-02	k: 3009	n:60000
Cons ci ratio: 1.566142e-01	ci left: 9.523568e-03	ci right 1.115765e-02	k: 619	n:60000
KS ci ratio: 2.059868e-02	ci left: 3.725045e-01	ci right 3.802741e-01	k: 22583	n:60000
EIF2C2   60000 perm   14 sec   (4202 perm/sec)   p_kst 3.763833e-01   p_cons 1.031667e-02   p_joint 5.015000e-02

Joint ci ratio: 6.643074e-02	ci left: 4.580938e-02	ci right 4.897113e-02	k: 3316	n:70000
Cons ci ratio: 1.444262e-01	ci left: 9.661677e-03	ci right 1.117932e-02	k: 728	n:70000
KS ci ratio: 1.908693e-02	ci left: 3.723955e-01	ci right 3.795862e-01	k: 26319	n:70000
EIF2C2   70000 perm   17 sec   (4139 perm/sec)   p_kst 3.759857e-01   p_cons 1.040000e-02   p_joint 4.737143e-02

Joint ci ratio: 6.006398e-02	ci left: 4.902965e-02	ci right 5.207805e-02	k: 4043	n:80000
Cons ci ratio: 1.345401e-01	ci left: 9.793135e-03	ci right 1.121770e-02	k: 839	n:80000
KS ci ratio: 1.784040e-02	ci left: 3.729911e-01	ci right 3.797178e-01	k: 30108	n:80000
EIF2C2   80000 perm   20 sec   (4075 perm/sec)   p_kst 3.763500e-01   p_cons 1.048750e-02   p_joint 5.053750e-02

Joint ci ratio: 5.575972e-02	ci left: 5.060221e-02	ci right 5.351564e-02	k: 4684	n:90000
Cons ci ratio: 1.272546e-01	ci left: 9.768996e-03	ci right 1.110728e-02	k: 938	n:90000
KS ci ratio: 1.682312e-02	ci left: 3.731001e-01	ci right 3.794412e-01	k: 33864	n:90000
EIF2C2   90000 perm   22 sec   (4018 perm/sec)   p_kst 3.762667e-01   p_cons 1.042222e-02   p_joint 5.204444e-02

Joint ci ratio: 5.491763e-02	ci left: 4.714706e-02	ci right 4.981921e-02	k: 4847	n:100000
Cons ci ratio: 1.212737e-01	ci left: 9.712558e-03	ci right 1.097609e-02	k: 1033	n:100000
KS ci ratio: 1.597675e-02	ci left: 3.727668e-01	ci right 3.787804e-01	k: 37577	n:100000
EIF2C2   100000 perm   25 sec   (3964 perm/sec)   p_kst 3.757700e-01   p_cons 1.033000e-02   p_joint 4.847000e-02

Joint ci ratio: 5.053963e-02	ci left: 5.054251e-02	ci right 5.317209e-02	k: 5703	n:110000
Cons ci ratio: 1.153434e-01	ci left: 9.791215e-03	ci right 1.099844e-02	k: 1142	n:110000
KS ci ratio: 1.523790e-02	ci left: 3.727642e-01	ci right 3.784970e-01	k: 41319	n:110000
EIF2C2   110000 perm   28 sec   (3906 perm/sec)   p_kst 3.756273e-01   p_cons 1.038182e-02   p_joint 5.184545e-02

Joint ci ratio: 4.954308e-02	ci left: 4.835359e-02	ci right 5.081824e-02	k: 5949	n:120000
Cons ci ratio: 1.104289e-01	ci left: 9.817488e-03	ci right 1.097302e-02	k: 1246	n:120000
KS ci ratio: 1.458124e-02	ci left: 3.731418e-01	ci right 3.786309e-01	k: 45106	n:120000
EIF2C2   120000 perm   31 sec   (3845 perm/sec)   p_kst 3.758833e-01   p_cons 1.038333e-02   p_joint 4.957500e-02

Joint ci ratio: 4.779417e-02	ci left: 4.802290e-02	ci right 5.038188e-02	k: 6395	n:130000
Cons ci ratio: 1.062126e-01	ci left: 9.818174e-03	ci right 1.092691e-02	k: 1347	n:130000
KS ci ratio: 1.400620e-02	ci left: 3.733505e-01	ci right 3.786243e-01	k: 48878	n:130000
EIF2C2   130000 perm   34 sec   (3771 perm/sec)   p_kst 3.759846e-01   p_cons 1.036154e-02   p_joint 4.919231e-02

Joint ci ratio: 4.372478e-02	ci left: 5.310450e-02	ci right 5.548543e-02	k: 7600	n:140000
Cons ci ratio: 1.020544e-01	ci left: 9.896063e-03	ci right 1.096722e-02	k: 1459	n:140000
KS ci ratio: 1.349834e-02	ci left: 3.733904e-01	ci right 3.784719e-01	k: 52630	n:140000
EIF2C2   140000 perm   38 sec   (3718 perm/sec)   p_kst 3.759286e-01   p_cons 1.042143e-02   p_joint 5.428571e-02

Joint ci ratio: 4.226392e-02	ci left: 5.309251e-02	ci right 5.539142e-02	k: 8135	n:150000
Cons ci ratio: 9.822295e-02	ci left: 9.990317e-03	ci right 1.102873e-02	k: 1575	n:150000
KS ci ratio: 1.302237e-02	ci left: 3.741337e-01	ci right 3.790444e-01	k: 56488	n:150000
EIF2C2   150000 perm   41 sec   (3665 perm/sec)   p_kst 3.765867e-01   p_cons 1.050000e-02   p_joint 5.423333e-02

Outputting figure to mutsig2_images.part000000000055/EIF2C2.4_2656_150000_0.37659_0.0105_0.054233.png
                gene_name: EIF2C2
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.0100 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.055 

Current progress: 42 percent done.
EIF3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.536699e-02	ci left: 2.557759e-01	ci right 2.731615e-01	k: 2644	n:10000
Cons ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
KS ci ratio: 5.785981e-02	ci left: 3.054047e-01	ci right 3.237035e-01	k: 3145	n:10000
EIF3D   10000 perm   2 sec   (5478 perm/sec)   p_kst 3.145000e-01   p_cons 1.086000e-01   p_joint 2.644000e-01

Joint ci ratio: 5.722166e-02	ci left: 1.845834e-01	ci right 1.955068e-01	k: 3800	n:20000
Cons ci ratio: 7.842279e-02	ci left: 1.066782e-01	ci right 1.154352e-01	k: 2220	n:20000
KS ci ratio: 4.059280e-02	ci left: 3.114980e-01	ci right 3.244550e-01	k: 6359	n:20000
EIF3D   20000 perm   4 sec   (5001 perm/sec)   p_kst 3.179500e-01   p_cons 1.110000e-01   p_joint 1.900000e-01

Outputting figure to mutsig2_images.part000000000055/EIF3D.4_1703_20000_0.31795_0.111_0.19.png
                gene_name: EIF3D
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 44 percent done.
EIF3F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.342837e-02	ci left: 7.280508e-01	ci right 7.454111e-01	k: 7368	n:10000
KS ci ratio: 3.823406e-02	ci left: 5.025508e-01	ci right 5.222420e-01	k: 5124	n:10000
EIF3F   10000 perm   2 sec   (5588 perm/sec)   p_kst 5.124000e-01   p_cons 7.368000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EIF3F.4_1106_10000_0.5124_0.7368_1.png
                gene_name: EIF3F
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
EIF3J
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
Cons ci ratio: 9.564886e-02	ci left: 1.368792e-01	ci right 1.507290e-01	k: 1437	n:10000
KS ci ratio: 4.100724e-02	ci left: 4.675680e-01	ci right 4.872452e-01	k: 4774	n:10000
EIF3J   10000 perm   2 sec   (5694 perm/sec)   p_kst 4.774000e-01   p_cons 1.437000e-01   p_joint 3.267000e-01

Outputting figure to mutsig2_images.part000000000055/EIF3J.4_809_10000_0.4774_0.1437_0.3267.png
                gene_name: EIF3J
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 47 percent done.
EFCAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.159387e-01	ci left: 2.844783e-02	ci right 3.542834e-02	k: 318	n:10000
Cons ci ratio: 2.583643e-01	ci left: 1.958938e-02	ci right 2.549330e-02	k: 224	n:10000
KS ci ratio: 2.152427e-01	ci left: 2.863733e-02	ci right 3.563870e-02	k: 320	n:10000
EFCAB1   10000 perm   1 sec   (7058 perm/sec)   p_kst 3.200000e-02   p_cons 2.240000e-02   p_joint 3.180000e-02

Joint ci ratio: 1.790652e-01	ci left: 2.130163e-02	ci right 2.553849e-02	k: 467	n:20000
Cons ci ratio: 1.802519e-01	ci left: 2.101484e-02	ci right 2.522538e-02	k: 461	n:20000
KS ci ratio: 1.435362e-01	ci left: 3.336431e-02	ci right 3.857172e-02	k: 718	n:20000
EFCAB1   20000 perm   3 sec   (6212 perm/sec)   p_kst 3.590000e-02   p_cons 2.305000e-02   p_joint 2.335000e-02

Joint ci ratio: 1.747285e-01	ci left: 1.505690e-02	ci right 1.797116e-02	k: 494	n:30000
Cons ci ratio: 1.556651e-01	ci left: 1.908669e-02	ci right 2.234040e-02	k: 620	n:30000
KS ci ratio: 1.185439e-01	ci left: 3.307835e-02	ci right 3.727896e-02	k: 1054	n:30000
EFCAB1   30000 perm   5 sec   (5839 perm/sec)   p_kst 3.513333e-02   p_cons 2.066667e-02   p_joint 1.646667e-02

Joint ci ratio: 1.028774e-01	ci left: 3.322031e-02	ci right 3.684759e-02	k: 1400	n:40000
Cons ci ratio: 1.347274e-01	ci left: 1.932710e-02	ci right 2.214308e-02	k: 828	n:40000
KS ci ratio: 1.046314e-01	ci left: 3.212354e-02	ci right 3.569454e-02	k: 1355	n:40000
EFCAB1   40000 perm   7 sec   (5592 perm/sec)   p_kst 3.387500e-02   p_cons 2.070000e-02   p_joint 3.500000e-02

Joint ci ratio: 9.663695e-02	ci left: 3.031828e-02	ci right 3.341638e-02	k: 1592	n:50000
Cons ci ratio: 1.194635e-01	ci left: 1.981931e-02	ci right 2.235671e-02	k: 1053	n:50000
KS ci ratio: 9.327260e-02	ci left: 3.252633e-02	ci right 3.572806e-02	k: 1705	n:50000
EFCAB1   50000 perm   9 sec   (5434 perm/sec)   p_kst 3.410000e-02   p_cons 2.106000e-02   p_joint 3.184000e-02

Joint ci ratio: 1.209097e-01	ci left: 1.617474e-02	ci right 1.827233e-02	k: 1032	n:60000
Cons ci ratio: 1.087392e-01	ci left: 2.004602e-02	ci right 2.236728e-02	k: 1271	n:60000
KS ci ratio: 8.478646e-02	ci left: 3.293959e-02	ci right 3.587234e-02	k: 2063	n:60000
EFCAB1   60000 perm   11 sec   (5298 perm/sec)   p_kst 3.438333e-02   p_cons 2.118333e-02   p_joint 1.720000e-02

Joint ci ratio: 1.154079e-01	ci left: 1.527774e-02	ci right 1.716267e-02	k: 1134	n:70000
Cons ci ratio: 1.005347e-01	ci left: 2.018742e-02	ci right 2.233824e-02	k: 1487	n:70000
KS ci ratio: 8.040114e-02	ci left: 3.152081e-02	ci right 3.417524e-02	k: 2298	n:70000
EFCAB1   70000 perm   14 sec   (5098 perm/sec)   p_kst 3.282857e-02   p_cons 2.124286e-02   p_joint 1.620000e-02

Joint ci ratio: 1.179210e-01	ci left: 1.282096e-02	ci right 1.443959e-02	k: 1089	n:80000
Cons ci ratio: 8.912070e-02	ci left: 2.255916e-02	ci right 2.467559e-02	k: 1888	n:80000
KS ci ratio: 7.487654e-02	ci left: 3.188330e-02	ci right 3.437570e-02	k: 2649	n:80000
EFCAB1   80000 perm   16 sec   (4964 perm/sec)   p_kst 3.311250e-02   p_cons 2.360000e-02   p_joint 1.361250e-02

Joint ci ratio: 1.257079e-01	ci left: 1.001654e-02	ci right 1.137083e-02	k: 961	n:90000
Cons ci ratio: 8.332624e-02	ci left: 2.299902e-02	ci right 2.500960e-02	k: 2159	n:90000
KS ci ratio: 7.059739e-02	ci left: 3.195166e-02	ci right 3.430078e-02	k: 2980	n:90000
EFCAB1   90000 perm   19 sec   (4834 perm/sec)   p_kst 3.311111e-02   p_cons 2.398889e-02   p_joint 1.067778e-02

Joint ci ratio: 9.699696e-02	ci left: 1.528994e-02	ci right 1.685831e-02	k: 1606	n:100000
Cons ci ratio: 7.916863e-02	ci left: 2.298178e-02	ci right 2.488597e-02	k: 2392	n:100000
KS ci ratio: 6.721869e-02	ci left: 3.178333e-02	ci right 3.400387e-02	k: 3288	n:100000
EFCAB1   100000 perm   21 sec   (4709 perm/sec)   p_kst 3.288000e-02   p_cons 2.392000e-02   p_joint 1.606000e-02

Outputting figure to mutsig2_images.part000000000055/EFCAB1.3_660_100000_0.03288_0.02392_0.01606.png
                gene_name: EFCAB1
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.017 

Current progress: 49 percent done.
EFCAB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.313289e-01	ci left: 7.640391e-02	ci right 8.724117e-02	k: 817	n:10000
Cons ci ratio: 2.166412e-01	ci left: 2.825837e-02	ci right 3.521793e-02	k: 316	n:10000
KS ci ratio: 4.883062e-02	ci left: 3.822151e-01	ci right 4.014480e-01	k: 3918	n:10000
EFCAB3   10000 perm   2 sec   (5538 perm/sec)   p_kst 3.918000e-01   p_cons 3.160000e-02   p_joint 8.170000e-02

Joint ci ratio: 8.800347e-02	ci left: 8.626460e-02	ci right 9.425499e-02	k: 1804	n:20000
Cons ci ratio: 1.422079e-01	ci left: 3.399185e-02	ci right 3.924397e-02	k: 731	n:20000
KS ci ratio: 3.441980e-02	ci left: 3.865709e-01	ci right 4.001602e-01	k: 7867	n:20000
EFCAB3   20000 perm   4 sec   (5012 perm/sec)   p_kst 3.933500e-01   p_cons 3.655000e-02   p_joint 9.020000e-02

Joint ci ratio: 7.069158e-02	ci left: 8.967076e-02	ci right 9.627497e-02	k: 2788	n:30000
Cons ci ratio: 1.240085e-01	ci left: 3.023114e-02	ci right 3.426011e-02	k: 966	n:30000
KS ci ratio: 2.802523e-02	ci left: 3.891627e-01	ci right 4.002577e-01	k: 11841	n:30000
EFCAB3   30000 perm   6 sec   (4809 perm/sec)   p_kst 3.947000e-01   p_cons 3.220000e-02   p_joint 9.293333e-02

Joint ci ratio: 6.016245e-02	ci left: 9.305597e-02	ci right 9.885284e-02	k: 3837	n:40000
Cons ci ratio: 1.074523e-01	ci left: 3.046721e-02	ci right 3.395114e-02	k: 1287	n:40000
KS ci ratio: 2.431672e-02	ci left: 3.890072e-01	ci right 3.986082e-01	k: 15752	n:40000
EFCAB3   40000 perm   9 sec   (4673 perm/sec)   p_kst 3.938000e-01   p_cons 3.217500e-02   p_joint 9.592500e-02

Joint ci ratio: 5.720164e-02	ci left: 8.339871e-02	ci right 8.832949e-02	k: 4292	n:50000
Cons ci ratio: 9.574047e-02	ci left: 3.088476e-02	ci right 3.400983e-02	k: 1621	n:50000
KS ci ratio: 2.167160e-02	ci left: 3.912303e-01	ci right 3.998218e-01	k: 19776	n:50000
EFCAB3   50000 perm   11 sec   (4610 perm/sec)   p_kst 3.955200e-01   p_cons 3.242000e-02   p_joint 8.584000e-02

Outputting figure to mutsig2_images.part000000000055/EFCAB3.3_1521_50000_0.39552_0.03242_0.08584.png
                gene_name: EFCAB3
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.088 

Current progress: 51 percent done.
EFHA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.050197e-02	ci left: 9.280257e-01	ci right 9.379203e-01	k: 9331	n:10000
KS ci ratio: 2.574656e-02	ci left: 6.894995e-01	ci right 7.075847e-01	k: 6986	n:10000
EFHA1   10000 perm   2 sec   (6264 perm/sec)   p_kst 6.986000e-01   p_cons 9.331000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EFHA1.3_1353_10000_0.6986_0.9331_1.png
                gene_name: EFHA1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
EFHA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.737018e-02	ci left: 8.284934e-01	ci right 8.431104e-01	k: 8359	n:10000
Cons ci ratio: 1.978425e-02	ci left: 7.889804e-01	ci right 8.048463e-01	k: 7970	n:10000
KS ci ratio: 3.558940e-02	ci left: 5.382828e-01	ci right 5.578892e-01	k: 5481	n:10000
EFHA2   10000 perm   2 sec   (5773 perm/sec)   p_kst 5.481000e-01   p_cons 7.970000e-01   p_joint 8.359000e-01

Outputting figure to mutsig2_images.part000000000055/EFHA2.3_1649_10000_0.5481_0.797_0.8359.png
                gene_name: EFHA2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 54 percent done.
EFNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.988129e-02	ci left: 3.721640e-01	ci right 3.913049e-01	k: 3817	n:10000
Cons ci ratio: 9.697687e-03	ci left: 9.376532e-01	ci right 9.468871e-01	k: 9424	n:10000
KS ci ratio: 7.027581e-02	ci left: 2.288905e-01	ci right 2.456629e-01	k: 2372	n:10000
EFNB1   10000 perm   2 sec   (6135 perm/sec)   p_kst 2.372000e-01   p_cons 9.424000e-01   p_joint 3.817000e-01

Outputting figure to mutsig2_images.part000000000055/EFNB1.3_1061_10000_0.2372_0.9424_0.3817.png
                gene_name: EFNB1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 56 percent done.
EFNB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.616004e-02	ci left: 3.183032e-01	ci right 3.367974e-01	k: 3275	n:10000
Cons ci ratio: 2.642698e-02	ci left: 6.783117e-01	ci right 6.965790e-01	k: 6875	n:10000
KS ci ratio: 7.025640e-02	ci left: 2.289892e-01	ci right 2.457640e-01	k: 2373	n:10000
EFNB3   10000 perm   2 sec   (6193 perm/sec)   p_kst 2.373000e-01   p_cons 6.875000e-01   p_joint 3.275000e-01

Outputting figure to mutsig2_images.part000000000055/EFNB3.3_1043_10000_0.2373_0.6875_0.3275.png
                gene_name: EFNB3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 58 percent done.
EFR3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.315017e-02	ci left: 8.928248e-01	ci right 9.047417e-01	k: 8989	n:10000
Cons ci ratio: 5.583028e-02	ci left: 3.208839e-01	ci right 3.394152e-01	k: 3301	n:10000
KS ci ratio: 1.172054e-02	ci left: 9.124500e-01	ci right 9.233051e-01	k: 9180	n:10000
EFR3A   10000 perm   2 sec   (5386 perm/sec)   p_kst 9.180000e-01   p_cons 3.301000e-01   p_joint 8.989000e-01

Outputting figure to mutsig2_images.part000000000055/EFR3A.3_2558_10000_0.918_0.3301_0.8989.png
                gene_name: EFR3A
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 60 percent done.
EGF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.289665e-02	ci left: 3.450184e-01	ci right 3.638665e-01	k: 3544	n:10000
Cons ci ratio: 1.858457e-02	ci left: 8.087717e-01	ci right 8.240436e-01	k: 8165	n:10000
KS ci ratio: 6.625207e-02	ci left: 2.506326e-01	ci right 2.679078e-01	k: 2592	n:10000
EGF   10000 perm   2 sec   (5224 perm/sec)   p_kst 2.592000e-01   p_cons 8.165000e-01   p_joint 3.544000e-01

Outputting figure to mutsig2_images.part000000000055/EGF.3_3720_10000_0.2592_0.8165_0.3544.png
                gene_name: EGF
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 61 percent done.
EGR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.612419e-02	ci left: 5.308720e-01	ci right 5.505042e-01	k: 5407	n:10000
Cons ci ratio: 8.135889e-02	ci left: 1.806791e-01	ci right 1.961029e-01	k: 1883	n:10000
KS ci ratio: 3.476387e-02	ci left: 5.499041e-01	ci right 5.694611e-01	k: 5597	n:10000
EGR1   10000 perm   2 sec   (5992 perm/sec)   p_kst 5.597000e-01   p_cons 1.883000e-01   p_joint 5.407000e-01

Outputting figure to mutsig2_images.part000000000055/EGR1.3_1640_10000_0.5597_0.1883_0.5407.png
                gene_name: EGR1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 63 percent done.
EHD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.421012e-02	ci left: 5.578216e-01	ci right 5.773390e-01	k: 5676	n:10000
KS ci ratio: 4.048500e-02	ci left: 4.739612e-01	ci right 4.936482e-01	k: 4838	n:10000
EHD4   10000 perm   2 sec   (6063 perm/sec)   p_kst 4.838000e-01   p_cons 5.676000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EHD4.3_1650_10000_0.4838_0.5676_1.png
                gene_name: EHD4
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
EHMT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.901255e-03	ci left: 9.820981e-01	ci right 9.870138e-01	k: 9847	n:10000
Cons ci ratio: 2.205248e-02	ci left: 7.510997e-01	ci right 7.679489e-01	k: 7596	n:10000
KS ci ratio: 2.750894e-02	ci left: 6.606855e-01	ci right 6.792154e-01	k: 6700	n:10000
EHMT2   10000 perm   2 sec   (5530 perm/sec)   p_kst 6.700000e-01   p_cons 7.596000e-01   p_joint 9.847000e-01

Outputting figure to mutsig2_images.part000000000055/EHMT2.3_3745_10000_0.67_0.7596_0.9847.png
                gene_name: EHMT2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 67 percent done.
EIF3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.352371e-02	ci left: 1.729074e-01	ci right 1.880792e-01	k: 1804	n:10000
Cons ci ratio: 6.023687e-02	ci left: 2.884508e-01	ci right 3.064673e-01	k: 2974	n:10000
KS ci ratio: 1.922817e-01	ci left: 3.605305e-02	ci right 4.381788e-02	k: 398	n:10000
EIF3B   10000 perm   2 sec   (5610 perm/sec)   p_kst 3.980000e-02   p_cons 2.974000e-01   p_joint 1.804000e-01

Joint ci ratio: 1.107455e-01	ci left: 5.567637e-02	ci right 6.225258e-02	k: 1178	n:20000
Cons ci ratio: 4.089418e-02	ci left: 3.083159e-01	ci right 3.212379e-01	k: 6295	n:20000
KS ci ratio: 1.384243e-01	ci left: 3.587580e-02	ci right 4.125942e-02	k: 770	n:20000
EIF3B   20000 perm   4 sec   (5060 perm/sec)   p_kst 3.850000e-02   p_cons 3.147500e-01   p_joint 5.890000e-02

Joint ci ratio: 8.640586e-02	ci left: 6.141936e-02	ci right 6.699874e-02	k: 1925	n:30000
Cons ci ratio: 3.343130e-02	ci left: 3.089819e-01	ci right 3.195207e-01	k: 9427	n:30000
KS ci ratio: 1.109690e-01	ci left: 3.771320e-02	ci right 4.217646e-02	k: 1197	n:30000
EIF3B   30000 perm   6 sec   (4835 perm/sec)   p_kst 3.990000e-02   p_cons 3.142333e-01   p_joint 6.416667e-02

Joint ci ratio: 7.282014e-02	ci left: 6.508490e-02	ci right 7.002810e-02	k: 2701	n:40000
Cons ci ratio: 2.906808e-02	ci left: 3.079838e-01	ci right 3.170934e-01	k: 12501	n:40000
KS ci ratio: 9.331766e-02	ci left: 4.027503e-02	ci right 4.424177e-02	k: 1689	n:40000
EIF3B   40000 perm   9 sec   (4688 perm/sec)   p_kst 4.222500e-02   p_cons 3.125250e-01   p_joint 6.752500e-02

Outputting figure to mutsig2_images.part000000000055/EIF3B.3_2517_40000_0.042225_0.31252_0.067525.png
                gene_name: EIF3B
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.070 

Current progress: 68 percent done.
EFCAB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.830297e-02	ci left: 5.016506e-01	ci right 5.213427e-01	k: 5115	n:10000
Cons ci ratio: 4.582155e-02	ci left: 4.127924e-01	ci right 4.322528e-01	k: 4225	n:10000
KS ci ratio: 2.881942e-02	ci left: 6.396537e-01	ci right 6.584594e-01	k: 6491	n:10000
EFCAB2   10000 perm   1 sec   (6729 perm/sec)   p_kst 6.491000e-01   p_cons 4.225000e-01   p_joint 5.115000e-01

Outputting figure to mutsig2_images.part000000000055/EFCAB2.2_550_10000_0.6491_0.4225_0.5115.png
                gene_name: EFCAB2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 70 percent done.
EFCAB4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.693458e-03	ci left: 9.488764e-01	ci right 9.572571e-01	k: 9532	n:10000
Cons ci ratio: 5.318683e-02	ci left: 3.425342e-01	ci right 3.613521e-01	k: 3519	n:10000
KS ci ratio: 6.114250e-02	ci left: 2.823074e-01	ci right 3.002143e-01	k: 2912	n:10000
EFCAB4B   10000 perm   2 sec   (5074 perm/sec)   p_kst 2.912000e-01   p_cons 3.519000e-01   p_joint 9.532000e-01

Outputting figure to mutsig2_images.part000000000055/EFCAB4B.2_2456_10000_0.2912_0.3519_0.9532.png
                gene_name: EFCAB4B
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 72 percent done.
EFEMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.260489e-02	ci left: 2.174386e-01	ci right 2.339215e-01	k: 2256	n:10000
Cons ci ratio: 9.719346e-02	ci left: 1.330589e-01	ci right 1.467516e-01	k: 1398	n:10000
KS ci ratio: 1.936779e-02	ci left: 7.958786e-01	ci right 8.115441e-01	k: 8038	n:10000
EFEMP1   10000 perm   2 sec   (5718 perm/sec)   p_kst 8.038000e-01   p_cons 1.398000e-01   p_joint 2.256000e-01

Outputting figure to mutsig2_images.part000000000055/EFEMP1.2_1522_10000_0.8038_0.1398_0.2256.png
                gene_name: EFEMP1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 74 percent done.
EFHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.010034e-01	ci left: 1.242496e-01	ci right 1.375662e-01	k: 1308	n:10000
Cons ci ratio: 7.492393e-02	ci left: 2.067847e-01	ci right 2.229817e-01	k: 2148	n:10000
KS ci ratio: 4.201491e-02	ci left: 4.554851e-01	ci right 4.751351e-01	k: 4653	n:10000
EFHD1   10000 perm   1 sec   (6911 perm/sec)   p_kst 4.653000e-01   p_cons 2.148000e-01   p_joint 1.308000e-01

Joint ci ratio: 7.078503e-02	ci left: 1.282239e-01	ci right 1.376831e-01	k: 2658	n:20000
Cons ci ratio: 5.305844e-02	ci left: 2.086795e-01	ci right 2.201037e-01	k: 4287	n:20000
KS ci ratio: 2.982215e-02	ci left: 4.565198e-01	ci right 4.703909e-01	k: 9269	n:20000
EFHD1   20000 perm   3 sec   (6122 perm/sec)   p_kst 4.634500e-01   p_cons 2.143500e-01   p_joint 1.329000e-01

Outputting figure to mutsig2_images.part000000000055/EFHD1.2_736_20000_0.46345_0.21435_0.1329.png
                gene_name: EFHD1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 75 percent done.
EGLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.259518e-02	ci left: 2.727991e-01	ci right 2.905282e-01	k: 2816	n:10000
Cons ci ratio: 1.490358e-01	ci left: 5.985938e-02	ci right 6.959607e-02	k: 646	n:10000
KS ci ratio: 4.773191e-02	ci left: 3.930670e-01	ci right 4.123897e-01	k: 4027	n:10000
EGLN2   10000 perm   2 sec   (5371 perm/sec)   p_kst 4.027000e-01   p_cons 6.460000e-02   p_joint 2.816000e-01

Joint ci ratio: 4.456995e-02	ci left: 2.726426e-01	ci right 2.851217e-01	k: 5577	n:20000
Cons ci ratio: 1.055174e-01	ci left: 6.113414e-02	ci right 6.799312e-02	k: 1290	n:20000
KS ci ratio: 3.316560e-02	ci left: 4.043690e-01	ci right 4.180569e-01	k: 8224	n:20000
EGLN2   20000 perm   5 sec   (3946 perm/sec)   p_kst 4.112000e-01   p_cons 6.450000e-02   p_joint 2.788500e-01

Joint ci ratio: 4.443228e-02	ci left: 2.014024e-01	ci right 2.105879e-01	k: 6179	n:30000
Cons ci ratio: 8.645384e-02	ci left: 6.135404e-02	ci right 6.693073e-02	k: 1923	n:30000
KS ci ratio: 2.708604e-02	ci left: 4.055244e-01	ci right 4.166928e-01	k: 12333	n:30000
EGLN2   30000 perm   8 sec   (3927 perm/sec)   p_kst 4.111000e-01   p_cons 6.410000e-02   p_joint 2.059667e-01

Outputting figure to mutsig2_images.part000000000055/EGLN2.2_1244_30000_0.4111_0.0641_0.20597.png
                gene_name: EGLN2
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 77 percent done.
EGLN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.508261e-02	ci left: 2.574577e-01	ci right 2.748787e-01	k: 2661	n:10000
Cons ci ratio: 7.136050e-02	ci left: 2.234596e-01	ci right 2.400969e-01	k: 2317	n:10000
KS ci ratio: 5.705138e-02	ci left: 3.114560e-01	ci right 3.298486e-01	k: 3206	n:10000
EGLN3   10000 perm   2 sec   (4893 perm/sec)   p_kst 3.206000e-01   p_cons 2.317000e-01   p_joint 2.661000e-01

Outputting figure to mutsig2_images.part000000000055/EGLN3.2_740_10000_0.3206_0.2317_0.2661.png
                gene_name: EGLN3
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 79 percent done.
EGR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.302694e-02	ci left: 8.945686e-01	ci right 9.063969e-01	k: 9006	n:10000
KS ci ratio: 2.118228e-02	ci left: 7.656735e-01	ci right 7.821666e-01	k: 7740	n:10000
EGR3   10000 perm   2 sec   (6464 perm/sec)   p_kst 7.740000e-01   p_cons 9.006000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EGR3.2_1172_10000_0.774_0.9006_1.png
                gene_name: EGR3
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
EHBP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.442409e-01	ci left: 1.059811e-02	ci right 1.509234e-02	k: 127	n:10000
Cons ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
KS ci ratio: 6.364781e-02	ci left: 2.661660e-01	ci right 2.837652e-01	k: 2749	n:10000
EHBP1L1   10000 perm   4 sec   (2843 perm/sec)   p_kst 2.749000e-01   p_cons 1.390000e-02   p_joint 1.270000e-02

Joint ci ratio: 2.347484e-01	ci left: 1.213498e-02	ci right 1.540863e-02	k: 274	n:20000
Cons ci ratio: 2.317754e-01	ci left: 1.246477e-02	ci right 1.577870e-02	k: 281	n:20000
KS ci ratio: 4.474232e-02	ci left: 2.711035e-01	ci right 2.835613e-01	k: 5546	n:20000
EHBP1L1   20000 perm   8 sec   (2606 perm/sec)   p_kst 2.773000e-01   p_cons 1.405000e-02   p_joint 1.370000e-02

Joint ci ratio: 1.892454e-01	ci left: 1.276459e-02	ci right 1.546404e-02	k: 422	n:30000
Cons ci ratio: 1.897008e-01	ci left: 1.270105e-02	ci right 1.539427e-02	k: 420	n:30000
KS ci ratio: 3.651228e-02	ci left: 2.724714e-01	ci right 2.826384e-01	k: 8326	n:30000
EHBP1L1   30000 perm   11 sec   (2748 perm/sec)   p_kst 2.775333e-01   p_cons 1.400000e-02   p_joint 1.406667e-02

Joint ci ratio: 1.635980e-01	ci left: 1.299143e-02	ci right 1.532988e-02	k: 565	n:40000
Cons ci ratio: 1.644846e-01	ci left: 1.284752e-02	ci right 1.517383e-02	k: 559	n:40000
KS ci ratio: 3.137730e-02	ci left: 2.762503e-01	ci right 2.850815e-01	k: 11226	n:40000
EHBP1L1   40000 perm   13 sec   (2973 perm/sec)   p_kst 2.806500e-01   p_cons 1.397500e-02   p_joint 1.412500e-02

Joint ci ratio: 1.458571e-01	ci left: 1.320050e-02	ci right 1.529645e-02	k: 711	n:50000
Cons ci ratio: 1.469072e-01	ci left: 1.300773e-02	ci right 1.508925e-02	k: 701	n:50000
KS ci ratio: 2.808246e-02	ci left: 2.764655e-01	ci right 2.843600e-01	k: 14020	n:50000
EHBP1L1   50000 perm   16 sec   (3113 perm/sec)   p_kst 2.804000e-01   p_cons 1.402000e-02   p_joint 1.422000e-02

Joint ci ratio: 1.342207e-01	ci left: 1.307513e-02	ci right 1.497231e-02	k: 840	n:60000
Cons ci ratio: 1.357011e-01	ci left: 1.278513e-02	ci right 1.466234e-02	k: 822	n:60000
KS ci ratio: 2.559043e-02	ci left: 2.775220e-01	ci right 2.847326e-01	k: 16867	n:60000
EHBP1L1   60000 perm   19 sec   (3200 perm/sec)   p_kst 2.811167e-01   p_cons 1.370000e-02   p_joint 1.400000e-02

Joint ci ratio: 1.247921e-01	ci left: 1.303191e-02	ci right 1.478015e-02	k: 972	n:70000
Cons ci ratio: 1.262474e-01	ci left: 1.272737e-02	ci right 1.445616e-02	k: 950	n:70000
KS ci ratio: 2.369159e-02	ci left: 2.778003e-01	ci right 2.844750e-01	k: 19679	n:70000
EHBP1L1   70000 perm   21 sec   (3256 perm/sec)   p_kst 2.811286e-01   p_cons 1.357143e-02   p_joint 1.388571e-02

Joint ci ratio: 1.169459e-01	ci left: 1.303944e-02	ci right 1.467110e-02	k: 1107	n:80000
Cons ci ratio: 1.183067e-01	ci left: 1.273601e-02	ci right 1.434955e-02	k: 1082	n:80000
KS ci ratio: 2.218027e-02	ci left: 2.776752e-01	ci right 2.839157e-01	k: 22463	n:80000
EHBP1L1   80000 perm   24 sec   (3287 perm/sec)   p_kst 2.807875e-01   p_cons 1.352500e-02   p_joint 1.383750e-02

Joint ci ratio: 1.099229e-01	ci left: 1.316688e-02	ci right 1.470913e-02	k: 1253	n:90000
Cons ci ratio: 1.115581e-01	ci left: 1.277782e-02	ci right 1.429822e-02	k: 1217	n:90000
KS ci ratio: 2.092154e-02	ci left: 2.776662e-01	ci right 2.835479e-01	k: 25254	n:90000
EHBP1L1   90000 perm   27 sec   (3284 perm/sec)   p_kst 2.806000e-01   p_cons 1.352222e-02   p_joint 1.392222e-02

Joint ci ratio: 1.037298e-01	ci left: 1.334913e-02	ci right 1.481926e-02	k: 1407	n:100000
Cons ci ratio: 1.052567e-01	ci left: 1.295945e-02	ci right 1.440896e-02	k: 1367	n:100000
KS ci ratio: 1.982588e-02	ci left: 2.782653e-01	ci right 2.838474e-01	k: 28105	n:100000
EHBP1L1   100000 perm   31 sec   (3251 perm/sec)   p_kst 2.810500e-01   p_cons 1.367000e-02   p_joint 1.407000e-02

Joint ci ratio: 9.879904e-02	ci left: 1.341154e-02	ci right 1.481425e-02	k: 1551	n:110000
Cons ci ratio: 1.005211e-01	ci left: 1.295044e-02	ci right 1.432993e-02	k: 1499	n:110000
KS ci ratio: 1.888607e-02	ci left: 2.787620e-01	ci right 2.840859e-01	k: 30956	n:110000
EHBP1L1   110000 perm   34 sec   (3254 perm/sec)   p_kst 2.814182e-01   p_cons 1.362727e-02   p_joint 1.410000e-02

Joint ci ratio: 9.436959e-02	ci left: 1.350562e-02	ci right 1.485134e-02	k: 1700	n:120000
Cons ci ratio: 9.604436e-02	ci left: 1.303364e-02	ci right 1.435668e-02	k: 1642	n:120000
KS ci ratio: 1.809146e-02	ci left: 2.786657e-01	ci right 2.837615e-01	k: 33745	n:120000
EHBP1L1   120000 perm   37 sec   (3231 perm/sec)   p_kst 2.812083e-01   p_cons 1.368333e-02   p_joint 1.416667e-02

Outputting figure to mutsig2_images.part000000000055/EHBP1L1.2_4648_120000_0.28121_0.013683_0.014167.png
                gene_name: EHBP1L1
               theta_stop: 0.096 
                    nperm: 120000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 82 percent done.
EHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.097963e-02	ci left: 6.058827e-01	ci right 6.250500e-01	k: 6155	n:10000
Cons ci ratio: 3.181688e-02	ci left: 5.931307e-01	ci right 6.124094e-01	k: 6028	n:10000
KS ci ratio: 4.286032e-02	ci left: 4.456034e-01	ci right 4.652226e-01	k: 4554	n:10000
EHD1   10000 perm   2 sec   (6188 perm/sec)   p_kst 4.554000e-01   p_cons 6.028000e-01   p_joint 6.155000e-01

Outputting figure to mutsig2_images.part000000000055/EHD1.2_1625_10000_0.4554_0.6028_0.6155.png
                gene_name: EHD1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 84 percent done.
EHHADH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.225593e-01	ci left: 8.708509e-02	ci right 9.855338e-02	k: 927	n:10000
Cons ci ratio: 1.551513e-01	ci left: 5.532768e-02	ci right 6.473065e-02	k: 599	n:10000
KS ci ratio: 2.350688e-02	ci left: 7.267375e-01	ci right 7.441252e-01	k: 7355	n:10000
EHHADH   10000 perm   2 sec   (6003 perm/sec)   p_kst 7.355000e-01   p_cons 5.990000e-02   p_joint 9.270000e-02

Joint ci ratio: 7.341911e-02	ci left: 1.201511e-01	ci right 1.293583e-01	k: 2494	n:20000
Cons ci ratio: 1.091316e-01	ci left: 5.728364e-02	ci right 6.394481e-02	k: 1211	n:20000
KS ci ratio: 1.655805e-02	ci left: 7.308392e-01	ci right 7.430918e-01	k: 14740	n:20000
EHHADH   20000 perm   4 sec   (5358 perm/sec)   p_kst 7.370000e-01   p_cons 6.055000e-02   p_joint 1.247000e-01

Joint ci ratio: 6.202383e-02	ci left: 1.138437e-01	ci right 1.211639e-01	k: 3524	n:30000
Cons ci ratio: 8.828207e-02	ci left: 5.893788e-02	ci right 6.441405e-02	k: 1849	n:30000
KS ci ratio: 1.355801e-02	ci left: 7.308720e-01	ci right 7.408823e-01	k: 22077	n:30000
EHHADH   30000 perm   6 sec   (5106 perm/sec)   p_kst 7.359000e-01   p_cons 6.163333e-02   p_joint 1.174667e-01

Outputting figure to mutsig2_images.part000000000055/EHHADH.2_2200_30000_0.7359_0.061633_0.11747.png
                gene_name: EHHADH
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 86 percent done.
EHMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.717692e-02	ci left: 5.165574e-01	ci right 5.362273e-01	k: 5264	n:10000
Cons ci ratio: 4.704442e-02	ci left: 4.000388e-01	ci right 4.194138e-01	k: 4097	n:10000
KS ci ratio: 8.853449e-02	ci left: 1.565950e-01	ci right 1.712014e-01	k: 1638	n:10000
EHMT1   10000 perm   2 sec   (5171 perm/sec)   p_kst 1.638000e-01   p_cons 4.097000e-01   p_joint 5.264000e-01

Outputting figure to mutsig2_images.part000000000055/EHMT1.2_4054_10000_0.1638_0.4097_0.5264.png
                gene_name: EHMT1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 88 percent done.
EIF2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.559385e-02	ci left: 6.920201e-01	ci right 7.100626e-01	k: 7011	n:10000
KS ci ratio: 5.642880e-02	ci left: 3.162190e-01	ci right 3.346828e-01	k: 3254	n:10000
EIF2A   10000 perm   2 sec   (6164 perm/sec)   p_kst 3.254000e-01   p_cons 7.011000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EIF2A.2_1814_10000_0.3254_0.7011_1.png
                gene_name: EIF2A
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
EIF2AK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.079888e-01	ci left: 3.072413e-02	ci right 3.795045e-02	k: 342	n:10000
Cons ci ratio: 2.499682e-01	ci left: 2.099569e-02	ci right 2.708592e-02	k: 239	n:10000
KS ci ratio: 2.463247e-02	ci left: 7.079580e-01	ci right 7.257155e-01	k: 7169	n:10000
EIF2AK3   10000 perm   2 sec   (5494 perm/sec)   p_kst 7.169000e-01   p_cons 2.390000e-02   p_joint 3.420000e-02

Joint ci ratio: 1.369529e-01	ci left: 3.664924e-02	ci right 4.208573e-02	k: 786	n:20000
Cons ci ratio: 1.741732e-01	ci left: 2.254539e-02	ci right 2.689429e-02	k: 493	n:20000
KS ci ratio: 1.742674e-02	ci left: 7.103989e-01	ci right 7.229380e-01	k: 14334	n:20000
EIF2AK3   20000 perm   4 sec   (4966 perm/sec)   p_kst 7.167000e-01   p_cons 2.465000e-02   p_joint 3.930000e-02

Joint ci ratio: 1.225110e-01	ci left: 3.097489e-02	ci right 3.504953e-02	k: 989	n:30000
Cons ci ratio: 1.419187e-01	ci left: 2.303750e-02	ci right 2.658867e-02	k: 743	n:30000
KS ci ratio: 1.421263e-02	ci left: 7.120327e-01	ci right 7.222585e-01	k: 21515	n:30000
EIF2AK3   30000 perm   6 sec   (4739 perm/sec)   p_kst 7.171667e-01   p_cons 2.476667e-02   p_joint 3.296667e-02

Joint ci ratio: 1.207994e-01	ci left: 2.409850e-02	ci right 2.722087e-02	k: 1025	n:40000
Cons ci ratio: 1.220256e-01	ci left: 2.361333e-02	ci right 2.670613e-02	k: 1005	n:40000
KS ci ratio: 1.226658e-02	ci left: 7.141147e-01	ci right 7.229536e-01	k: 28742	n:40000
EIF2AK3   40000 perm   9 sec   (4587 perm/sec)   p_kst 7.185500e-01   p_cons 2.512500e-02   p_joint 2.562500e-02

Joint ci ratio: 1.087667e-01	ci left: 2.394117e-02	ci right 2.671432e-02	k: 1265	n:50000
Cons ci ratio: 1.098850e-01	ci left: 2.345452e-02	ci right 2.620103e-02	k: 1240	n:50000
KS ci ratio: 1.095288e-02	ci left: 7.152785e-01	ci right 7.231760e-01	k: 35962	n:50000
EIF2AK3   50000 perm   11 sec   (4461 perm/sec)   p_kst 7.192400e-01   p_cons 2.480000e-02   p_joint 2.530000e-02

Joint ci ratio: 9.899638e-02	ci left: 2.420452e-02	ci right 2.674166e-02	k: 1527	n:60000
Cons ci ratio: 1.001800e-01	ci left: 2.363537e-02	ci right 2.614421e-02	k: 1492	n:60000
KS ci ratio: 9.994202e-03	ci left: 7.158028e-01	ci right 7.230093e-01	k: 43165	n:60000
EIF2AK3   60000 perm   14 sec   (4353 perm/sec)   p_kst 7.194167e-01   p_cons 2.486667e-02   p_joint 2.545000e-02

Joint ci ratio: 9.209566e-02	ci left: 2.406547e-02	ci right 2.640268e-02	k: 1765	n:70000
Cons ci ratio: 9.323941e-02	ci left: 2.347904e-02	ci right 2.578916e-02	k: 1723	n:70000
KS ci ratio: 9.240784e-03	ci left: 7.166003e-01	ci right 7.232672e-01	k: 50396	n:70000
EIF2AK3   70000 perm   16 sec   (4279 perm/sec)   p_kst 7.199429e-01   p_cons 2.461429e-02   p_joint 2.521429e-02

Outputting figure to mutsig2_images.part000000000055/EIF2AK3.2_3419_70000_0.71994_0.024614_0.025214.png
                gene_name: EIF2AK3
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 91 percent done.
EIF2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.251226e-02	ci left: 5.826932e-01	ci right 6.020529e-01	k: 5924	n:10000
Cons ci ratio: 3.122884e-02	ci left: 6.020664e-01	ci right 6.212685e-01	k: 6117	n:10000
KS ci ratio: 4.742576e-02	ci left: 3.961543e-01	ci right 4.155006e-01	k: 4058	n:10000
EIF2B1   10000 perm   2 sec   (6627 perm/sec)   p_kst 4.058000e-01   p_cons 6.117000e-01   p_joint 5.924000e-01

Outputting figure to mutsig2_images.part000000000055/EIF2B1.2_954_10000_0.4058_0.6117_0.5924.png
                gene_name: EIF2B1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 93 percent done.
EIF2B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.772199e-02	ci left: 3.931666e-01	ci right 4.124900e-01	k: 4028	n:10000
Cons ci ratio: 8.732659e-02	ci left: 1.603269e-01	ci right 1.750672e-01	k: 1676	n:10000
KS ci ratio: 1.377056e-02	ci left: 8.839084e-01	ci right 8.962634e-01	k: 8902	n:10000
EIF2B3   10000 perm   2 sec   (6212 perm/sec)   p_kst 8.902000e-01   p_cons 1.676000e-01   p_joint 4.028000e-01

Outputting figure to mutsig2_images.part000000000055/EIF2B3.2_1440_10000_0.8902_0.1676_0.4028.png
                gene_name: EIF2B3
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 95 percent done.
EIF3E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.871893e-02	ci left: 4.962503e-01	ci right 5.159461e-01	k: 5061	n:10000
Cons ci ratio: 3.261332e-02	ci left: 5.811882e-01	ci right 6.005589e-01	k: 5909	n:10000
KS ci ratio: 4.786111e-02	ci left: 3.917725e-01	ci right 4.110850e-01	k: 4014	n:10000
EIF3E   10000 perm   2 sec   (6060 perm/sec)   p_kst 4.014000e-01   p_cons 5.909000e-01   p_joint 5.061000e-01

Outputting figure to mutsig2_images.part000000000055/EIF3E.2_1390_10000_0.4014_0.5909_0.5061.png
                gene_name: EIF3E
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 96 percent done.
EIF3I
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.255936e-02	ci left: 7.426043e-01	ci right 7.596492e-01	k: 7512	n:10000
KS ci ratio: 4.377898e-02	ci left: 4.351271e-01	ci right 4.547050e-01	k: 4449	n:10000
EIF3I   10000 perm   2 sec   (6334 perm/sec)   p_kst 4.449000e-01   p_cons 7.512000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EIF3I.2_1022_10000_0.4449_0.7512_1.png
                gene_name: EIF3I
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
EIF3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.222363e-02	ci left: 5.870082e-01	ci right 6.063355e-01	k: 5967	n:10000
KS ci ratio: 3.115659e-02	ci left: 6.031711e-01	ci right 6.223632e-01	k: 6128	n:10000
EIF3L   10000 perm   2 sec   (6099 perm/sec)   p_kst 6.128000e-01   p_cons 5.967000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000055/EIF3L.2_1747_10000_0.6128_0.5967_1.png
                gene_name: EIF3L
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000055
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 55 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1419>
Subject: Job 9893924: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1419>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000056> was used as the working directory.
Started at Sat Oct  6 00:06:30 2012
Results reported at Sat Oct  6 00:17:38 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000056.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000056.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 56  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000056.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    752.38 sec.
    Max Memory :      3635 MB
    Max Swap   :      5944 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
56
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 56
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 56: processing genes 4959 - 5048
Calculating significance of each gene.
Using projection method.
4959	EIF3M	7.844899e-01
4960	EIF4A1	1
In gene EIF4A2 the following bins exceed PROBCAP:
    COAD-AA-A017	categ 6	N = 1268    n = 1	mu =   2.63e-07
4961	EIF4A2	2.916235e-04
4962	EIF4A3	1
4963	EIF4B	9.046189e-01
4964	EIF4E	1
4965	EIF4E1B	4.781873e-01
4966	EIF4E2	3.380312e-01
4967	EIF4E3	1
4968	EIF4EBP1	1
4969	EIF4EBP2	4.496689e-01
4970	EIF4EBP3	1
4971	EIF4ENIF1	3.283186e-01
4972	EIF4G1	8.956706e-01
4973	EIF4G2	3.395570e-01
4974	EIF4G3	3.171799e-01
4975	EIF4H	1
4976	EIF5	5.612153e-01
4977	EIF5A	8.899102e-02
4978	EIF5A2	3.997953e-01
4979	EIF5AL1	1
4980	EIF5B	8.360155e-01
4981	EIF6	6.938945e-01
4982	ELAC1	3.341646e-01
4983	ELAC2	9.530596e-01
4984	ELANE	8.181616e-01
4985	ELAVL1	2.441388e-01
4986	ELAVL2	3.065199e-03
4987	ELAVL3	7.207505e-01
4988	ELAVL4	6.513528e-01
4989	ELF1	3.973740e-02
4990	ELF2	7.388992e-01
4991	ELF3	5.827240e-04
4992	ELF4	4.077969e-01
4993	ELF5	7.648573e-02
4994	ELFN2	9.771080e-01
4995	ELK1	1
4996	ELK3	7.583748e-02
4997	ELK4	6.788306e-01
4998	ELL	6.207189e-01
4999	ELL2	7.280008e-01
5000/18030 5000	ELL3	3.021492e-01
5001	ELMO1	9.850654e-02
5002	ELMO2	7.848497e-01
5003	ELMO3	9.005311e-01
5004	ELMOD1	2.933633e-01
5005	ELMOD2	1.111907e-01
5006	ELMOD3	2.918384e-01
5007	ELN	9.782925e-01
5008	ELOF1	1
5009	ELOVL1	6.465994e-01
5010	ELOVL2	1.153385e-01
5011	ELOVL3	1
5012	ELOVL4	5.221178e-02
5013	ELOVL5	6.205264e-01
5014	ELOVL6	5.964730e-01
5015	ELOVL7	5.359321e-01
5016	ELP2	5.291837e-01
5017	ELP3	6.490866e-01
5018	ELP4	4.677549e-01
5019	ELSPBP1	4.668255e-01
5020	ELTD1	1.003675e-01
5021	EMB	5.382580e-02
5022	EMCN	3.742984e-01
5023	EMD	1
5024	EME1	2.409286e-01
5025	EME2	1
5026	EMG1	5.771452e-01
5027	EMID1	4.693619e-01
5028	EMID2	1
5029	EMILIN1	9.764681e-01
5030	EMILIN2	6.864535e-01
5031	EMILIN3	8.948538e-01
5032	EML1	9.082308e-02
5033	EML2	4.587195e-01
5034	EML3	9.888422e-01
5035	EML4	9.400198e-01
5036	EML5	5.856968e-01
5037	EMP1	1
5038	EMP2	1
5039	EMP3	1
5040	EMR1	3.100171e-01
5041	EMR2	6.948063e-01
5042	EMR3	1.046522e-01
5043	EMX1	1.414064e-01
5044	EMX2	3.609724e-01
5045	EN1	8.850813e-01
5046	EN2	4.290255e-01
5047	ENAH	7.267416e-01
5048	ENAM	2.029922e-02
Done

Running MutSig 2:
Scatter job 56: processing genes 4959 - 5048
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
EML5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.257634e-02	ci left: 4.488969e-01	ci right 4.685272e-01	k: 4587	n:10000
Cons ci ratio: 5.426490e-02	ci left: 3.334940e-01	ci right 3.521976e-01	k: 3428	n:10000
KS ci ratio: 5.840080e-02	ci left: 3.014375e-01	ci right 3.196729e-01	k: 3105	n:10000
EML5   10000 perm   4 sec   (2578 perm/sec)   p_kst 3.105000e-01   p_cons 3.428000e-01   p_joint 4.587000e-01

Outputting figure to mutsig2_images.part000000000056/EML5.12_6106_10000_0.3105_0.3428_0.4587.png
                gene_name: EML5
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 2 percent done.
EIF4G3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.569156e-02	ci left: 6.904069e-01	ci right 7.084768e-01	k: 6995	n:10000
Cons ci ratio: 3.687240e-02	ci left: 5.206607e-01	ci right 5.403215e-01	k: 5305	n:10000
KS ci ratio: 3.530301e-02	ci left: 5.422895e-01	ci right 5.618801e-01	k: 5521	n:10000
EIF4G3   10000 perm   3 sec   (3760 perm/sec)   p_kst 5.521000e-01   p_cons 5.305000e-01   p_joint 6.995000e-01

Outputting figure to mutsig2_images.part000000000056/EIF4G3.11_4878_10000_0.5521_0.5305_0.6995.png
                gene_name: EIF4G3
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 4 percent done.
EML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.674103e-02	ci left: 6.731734e-01	ci right 6.915203e-01	k: 6824	n:10000
Cons ci ratio: 7.510200e-02	ci left: 2.059958e-01	ci right 2.221711e-01	k: 2140	n:10000
KS ci ratio: 7.408143e-03	ci left: 9.618396e-01	ci right 9.690860e-01	k: 9656	n:10000
EML1   10000 perm   2 sec   (4641 perm/sec)   p_kst 9.656000e-01   p_cons 2.140000e-01   p_joint 6.824000e-01

Outputting figure to mutsig2_images.part000000000056/EML1.11_2597_10000_0.9656_0.214_0.6824.png
                gene_name: EML1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 6 percent done.
EIF4G1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.195589e-02	ci left: 7.527183e-01	ci right 7.695293e-01	k: 7612	n:10000
Cons ci ratio: 1.519581e-02	ci left: 8.626380e-01	ci right 8.759461e-01	k: 8694	n:10000
KS ci ratio: 3.410571e-02	ci left: 5.593253e-01	ci right 5.788345e-01	k: 5691	n:10000
EIF4G1   10000 perm   3 sec   (3556 perm/sec)   p_kst 5.691000e-01   p_cons 8.694000e-01   p_joint 7.612000e-01

Outputting figure to mutsig2_images.part000000000056/EIF4G1.9_4924_10000_0.5691_0.8694_0.7612.png
                gene_name: EIF4G1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 8 percent done.
ENAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.375026e-02	ci left: 1.721207e-01	ci right 1.872663e-01	k: 1796	n:10000
Cons ci ratio: 1.263811e-02	ci left: 9.000087e-01	ci right 9.115537e-01	k: 9059	n:10000
KS ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
ENAM   10000 perm   2 sec   (4523 perm/sec)   p_kst 9.500000e-02   p_cons 9.059000e-01   p_joint 1.796000e-01

Joint ci ratio: 5.981036e-02	ci left: 1.714856e-01	ci right 1.821085e-01	k: 3535	n:20000
Cons ci ratio: 8.576897e-03	ci left: 9.086517e-01	ci right 9.165279e-01	k: 18253	n:20000
KS ci ratio: 8.535257e-02	ci left: 9.131366e-02	ci right 9.950440e-02	k: 1907	n:20000
ENAM   20000 perm   5 sec   (4057 perm/sec)   p_kst 9.535000e-02   p_cons 9.126500e-01   p_joint 1.767500e-01

Outputting figure to mutsig2_images.part000000000056/ENAM.9_3461_20000_0.09535_0.91265_0.17675.png
                gene_name: ENAM
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.100 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 10 percent done.
ELF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.093398e-02	ci left: 7.698255e-01	ci right 7.862122e-01	k: 7781	n:10000
Cons ci ratio: 2.228785e-02	ci left: 7.471549e-01	ci right 7.640960e-01	k: 7557	n:10000
KS ci ratio: 3.533157e-02	ci left: 5.418888e-01	ci right 5.614810e-01	k: 5517	n:10000
ELF1   10000 perm   2 sec   (4461 perm/sec)   p_kst 5.517000e-01   p_cons 7.557000e-01   p_joint 7.781000e-01

Outputting figure to mutsig2_images.part000000000056/ELF1.8_1892_10000_0.5517_0.7557_0.7781.png
                gene_name: ELF1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 12 percent done.
ELMO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.627086e-03	ci left: 9.769554e-01	ci right 9.825602e-01	k: 9799	n:10000
KS ci ratio: 1.425851e-02	ci left: 8.767431e-01	ci right 8.894328e-01	k: 8832	n:10000
ELMO1   10000 perm   2 sec   (5066 perm/sec)   p_kst 8.832000e-01   p_cons 9.799000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/ELMO1.8_2268_10000_0.8832_0.9799_1.png
                gene_name: ELMO1
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
EMR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.590558e-02	ci left: 6.868784e-01	ci right 7.050074e-01	k: 6960	n:10000
Cons ci ratio: 1.122343e-02	ci left: 9.189410e-01	ci right 9.294103e-01	k: 9243	n:10000
KS ci ratio: 3.946939e-02	ci left: 4.866526e-01	ci right 5.063494e-01	k: 4965	n:10000
EMR1   10000 perm   2 sec   (4608 perm/sec)   p_kst 4.965000e-01   p_cons 9.243000e-01   p_joint 6.960000e-01

Outputting figure to mutsig2_images.part000000000056/EMR1.8_2745_10000_0.4965_0.9243_0.696.png
                gene_name: EMR1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 15 percent done.
EMR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.310533e-02	ci left: 3.432297e-01	ci right 3.620562e-01	k: 3526	n:10000
Cons ci ratio: 3.770962e-02	ci left: 5.094531e-01	ci right 5.291357e-01	k: 5193	n:10000
KS ci ratio: 8.821285e-02	ci left: 1.575769e-01	ci right 1.722188e-01	k: 1648	n:10000
EMR3   10000 perm   2 sec   (4305 perm/sec)   p_kst 1.648000e-01   p_cons 5.193000e-01   p_joint 3.526000e-01

Outputting figure to mutsig2_images.part000000000056/EMR3.8_2023_10000_0.1648_0.5193_0.3526.png
                gene_name: EMR3
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 17 percent done.
EIF4ENIF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.785907e-02	ci left: 2.416357e-01	ci right 2.587100e-01	k: 2501	n:10000
Cons ci ratio: 1.003429e-01	ci left: 1.257171e-01	ci right 1.390978e-01	k: 1323	n:10000
KS ci ratio: 3.897529e-02	ci left: 4.929507e-01	ci right 5.126477e-01	k: 5028	n:10000
EIF4ENIF1   10000 perm   2 sec   (4829 perm/sec)   p_kst 5.028000e-01   p_cons 1.323000e-01   p_joint 2.501000e-01

Joint ci ratio: 3.843071e-02	ci left: 3.355732e-01	ci right 3.487727e-01	k: 6843	n:20000
Cons ci ratio: 7.090811e-02	ci left: 1.278300e-01	ci right 1.372771e-01	k: 2650	n:20000
KS ci ratio: 2.657331e-02	ci left: 5.140990e-01	ci right 5.279949e-01	k: 10421	n:20000
EIF4ENIF1   20000 perm   5 sec   (4311 perm/sec)   p_kst 5.210500e-01   p_cons 1.325000e-01   p_joint 3.421500e-01

Outputting figure to mutsig2_images.part000000000056/EIF4ENIF1.7_3033_20000_0.52105_0.1325_0.34215.png
                gene_name: EIF4ENIF1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 19 percent done.
EIF4G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.819289e-02	ci left: 8.151724e-01	ci right 8.302391e-01	k: 8228	n:10000
Cons ci ratio: 3.180359e-02	ci left: 5.933315e-01	ci right 6.126085e-01	k: 6030	n:10000
KS ci ratio: 2.905383e-02	ci left: 6.359324e-01	ci right 6.547828e-01	k: 6454	n:10000
EIF4G2   10000 perm   2 sec   (4714 perm/sec)   p_kst 6.454000e-01   p_cons 6.030000e-01   p_joint 8.228000e-01

Outputting figure to mutsig2_images.part000000000056/EIF4G2.7_2808_10000_0.6454_0.603_0.8228.png
                gene_name: EIF4G2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 21 percent done.
ELAVL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.570908e-02	ci left: 4.139884e-01	ci right 4.334561e-01	k: 4237	n:10000
Cons ci ratio: 2.076422e-02	ci left: 7.726617e-01	ci right 7.889744e-01	k: 7809	n:10000
KS ci ratio: 6.987054e-02	ci left: 2.309646e-01	ci right 2.477875e-01	k: 2393	n:10000
ELAVL2   10000 perm   2 sec   (5779 perm/sec)   p_kst 2.393000e-01   p_cons 7.809000e-01   p_joint 4.237000e-01

Outputting figure to mutsig2_images.part000000000056/ELAVL2.7_1104_10000_0.2393_0.7809_0.4237.png
                gene_name: ELAVL2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 23 percent done.
ELTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.538916e-02	ci left: 8.596771e-01	ci right 8.731087e-01	k: 8665	n:10000
Cons ci ratio: 2.742191e-02	ci left: 6.620951e-01	ci right 6.806050e-01	k: 6714	n:10000
KS ci ratio: 5.094380e-02	ci left: 3.623163e-01	ci right 3.813585e-01	k: 3718	n:10000
ELTD1   10000 perm   2 sec   (5180 perm/sec)   p_kst 3.718000e-01   p_cons 6.714000e-01   p_joint 8.665000e-01

Outputting figure to mutsig2_images.part000000000056/ELTD1.7_2133_10000_0.3718_0.6714_0.8665.png
                gene_name: ELTD1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 25 percent done.
ELF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.940154e-01	ci left: 7.872887e-03	ci right 1.182054e-02	k: 97	n:10000
Cons ci ratio: 6.413009e-02	ci left: 2.631968e-01	ci right 2.807362e-01	k: 2719	n:10000
KS ci ratio: 4.737275e-01	ci left: 5.196070e-03	ci right 8.501060e-03	k: 67	n:10000
ELF3   10000 perm   2 sec   (5666 perm/sec)   p_kst 6.700000e-03   p_cons 2.719000e-01   p_joint 9.700000e-03

Joint ci ratio: 1.720426e-01	ci left: 2.311997e-02	ci right 2.751951e-02	k: 505	n:20000
Cons ci ratio: 4.437134e-02	ci left: 2.744301e-01	ci right 2.869337e-01	k: 5613	n:20000
KS ci ratio: 3.523572e-01	ci left: 5.068179e-03	ci right 7.279094e-03	k: 122	n:20000
ELF3   20000 perm   4 sec   (4951 perm/sec)   p_kst 6.100000e-03   p_cons 2.806500e-01   p_joint 2.525000e-02

Joint ci ratio: 1.335894e-01	ci left: 2.603335e-02	ci right 2.979216e-02	k: 836	n:30000
Cons ci ratio: 3.486133e-02	ci left: 2.913020e-01	ci right 3.016708e-01	k: 8894	n:30000
KS ci ratio: 2.896822e-01	ci left: 5.188478e-03	ci right 6.975876e-03	k: 181	n:30000
ELF3   30000 perm   6 sec   (4744 perm/sec)   p_kst 6.033333e-03   p_cons 2.964667e-01   p_joint 2.786667e-02

Joint ci ratio: 1.351442e-01	ci left: 1.920624e-02	ci right 2.201396e-02	k: 823	n:40000
Cons ci ratio: 3.147472e-02	ci left: 2.750064e-01	ci right 2.838256e-01	k: 11176	n:40000
KS ci ratio: 2.533357e-01	ci left: 5.196454e-03	ci right 6.726605e-03	k: 237	n:40000
ELF3   40000 perm   9 sec   (4613 perm/sec)   p_kst 5.925000e-03   p_cons 2.794000e-01   p_joint 2.057500e-02

Joint ci ratio: 1.247668e-01	ci left: 1.815085e-02	ci right 2.058541e-02	k: 967	n:50000
Cons ci ratio: 2.763823e-02	ci left: 2.829179e-01	ci right 2.908668e-01	k: 14344	n:50000
KS ci ratio: 2.295195e-01	ci left: 5.134365e-03	ci right 6.483983e-03	k: 289	n:50000
ELF3   50000 perm   11 sec   (4453 perm/sec)   p_kst 5.780000e-03   p_cons 2.868800e-01   p_joint 1.934000e-02

Joint ci ratio: 1.158750e-01	ci left: 1.763108e-02	ci right 1.981582e-02	k: 1122	n:60000
Cons ci ratio: 2.520140e-02	ci left: 2.837311e-01	ci right 2.909895e-01	k: 17241	n:60000
KS ci ratio: 2.113626e-01	ci left: 5.097510e-03	ci right 6.317716e-03	k: 341	n:60000
ELF3   60000 perm   14 sec   (4322 perm/sec)   p_kst 5.683333e-03   p_cons 2.873500e-01   p_joint 1.870000e-02

Joint ci ratio: 9.638083e-02	ci left: 2.197193e-02	ci right 2.421070e-02	k: 1615	n:70000
Cons ci ratio: 2.330406e-02	ci left: 2.844905e-01	ci right 2.912128e-01	k: 20149	n:70000
KS ci ratio: 1.966779e-01	ci left: 5.087794e-03	ci right 6.210924e-03	k: 394	n:70000
ELF3   70000 perm   17 sec   (4223 perm/sec)   p_kst 5.628571e-03   p_cons 2.878429e-01   p_joint 2.307143e-02

Joint ci ratio: 9.372041e-02	ci left: 2.039613e-02	ci right 2.241379e-02	k: 1711	n:80000
Cons ci ratio: 2.180266e-02	ci left: 2.846393e-01	ci right 2.909261e-01	k: 23022	n:80000
KS ci ratio: 1.855169e-01	ci left: 5.035022e-03	ci right 6.076329e-03	k: 443	n:80000
ELF3   80000 perm   19 sec   (4143 perm/sec)   p_kst 5.537500e-03   p_cons 2.877750e-01   p_joint 2.138750e-02

Joint ci ratio: 1.011232e-01	ci left: 1.559112e-02	ci right 1.726248e-02	k: 1477	n:90000
Cons ci ratio: 2.057854e-02	ci left: 2.843672e-01	ci right 2.902910e-01	k: 25859	n:90000
KS ci ratio: 1.755265e-01	ci left: 5.027257e-03	ci right 6.005030e-03	k: 495	n:90000
ELF3   90000 perm   22 sec   (4073 perm/sec)   p_kst 5.500000e-03   p_cons 2.873222e-01   p_joint 1.641111e-02

Joint ci ratio: 7.687892e-02	ci left: 2.436493e-02	ci right 2.632273e-02	k: 2533	n:100000
Cons ci ratio: 1.955275e-02	ci left: 2.838884e-01	ci right 2.895040e-01	k: 28669	n:100000
KS ci ratio: 1.668408e-01	ci left: 5.031835e-03	ci right 5.957203e-03	k: 548	n:100000
ELF3   100000 perm   25 sec   (4004 perm/sec)   p_kst 5.480000e-03   p_cons 2.866900e-01   p_joint 2.533000e-02

Joint ci ratio: 7.217213e-02	ci left: 2.517473e-02	ci right 2.706855e-02	k: 2872	n:110000
Cons ci ratio: 1.866190e-02	ci left: 2.836026e-01	ci right 2.889541e-01	k: 31490	n:110000
KS ci ratio: 1.598637e-01	ci left: 5.001638e-03	ci right 5.879293e-03	k: 597	n:110000
ELF3   110000 perm   28 sec   (3938 perm/sec)   p_kst 5.427273e-03   p_cons 2.862727e-01   p_joint 2.610909e-02

Joint ci ratio: 7.337251e-02	ci left: 2.238019e-02	ci right 2.409296e-02	k: 2787	n:120000
Cons ci ratio: 1.786552e-02	ci left: 2.837601e-01	ci right 2.888836e-01	k: 34358	n:120000
KS ci ratio: 1.517034e-01	ci left: 5.113427e-03	ci right 5.960738e-03	k: 663	n:120000
ELF3   120000 perm   31 sec   (3873 perm/sec)   p_kst 5.525000e-03   p_cons 2.863167e-01   p_joint 2.322500e-02

Joint ci ratio: 7.390144e-02	ci left: 2.040113e-02	ci right 2.197417e-02	k: 2753	n:130000
Cons ci ratio: 1.681289e-02	ci left: 2.923759e-01	ci right 2.973409e-01	k: 38331	n:130000
KS ci ratio: 1.466084e-01	ci left: 5.068125e-03	ci right 5.877252e-03	k: 710	n:130000
ELF3   130000 perm   34 sec   (3810 perm/sec)   p_kst 5.461538e-03   p_cons 2.948538e-01   p_joint 2.117692e-02

Joint ci ratio: 6.725198e-02	ci left: 2.289545e-02	ci right 2.449579e-02	k: 3316	n:140000
Cons ci ratio: 1.619063e-02	ci left: 2.927401e-01	ci right 2.975255e-01	k: 41318	n:140000
KS ci ratio: 1.407856e-01	ci left: 5.119292e-03	ci right 5.901403e-03	k: 770	n:140000
ELF3   140000 perm   37 sec   (3751 perm/sec)   p_kst 5.500000e-03   p_cons 2.951286e-01   p_joint 2.368571e-02

Joint ci ratio: 6.850936e-02	ci left: 2.062771e-02	ci right 2.209754e-02	k: 3203	n:150000
Cons ci ratio: 1.565000e-02	ci left: 2.925997e-01	ci right 2.972216e-01	k: 44236	n:150000
KS ci ratio: 1.361836e-01	ci left: 5.119098e-03	ci right 5.873543e-03	k: 823	n:150000
ELF3   150000 perm   41 sec   (3690 perm/sec)   p_kst 5.486667e-03   p_cons 2.949067e-01   p_joint 2.135333e-02

Joint ci ratio: 6.906371e-02	ci left: 1.905538e-02	ci right 2.042460e-02	k: 3157	n:160000
Cons ci ratio: 1.514647e-02	ci left: 2.928533e-01	ci right 2.973291e-01	k: 47214	n:160000
KS ci ratio: 1.326149e-01	ci left: 5.070940e-03	ci right 5.797158e-03	k: 868	n:160000
ELF3   160000 perm   44 sec   (3631 perm/sec)   p_kst 5.425000e-03   p_cons 2.950875e-01   p_joint 1.973125e-02

Joint ci ratio: 6.930613e-02	ci left: 1.783003e-02	ci right 1.911587e-02	k: 3139	n:170000
Cons ci ratio: 1.469755e-02	ci left: 2.928268e-01	ci right 2.971684e-01	k: 50149	n:170000
KS ci ratio: 1.283282e-01	ci left: 5.108388e-03	ci right 5.814521e-03	k: 927	n:170000
ELF3   170000 perm   48 sec   (3576 perm/sec)   p_kst 5.452941e-03   p_cons 2.949941e-01   p_joint 1.846471e-02

Joint ci ratio: 6.779845e-02	ci left: 1.761477e-02	ci right 1.885637e-02	k: 3281	n:180000
Cons ci ratio: 1.429605e-02	ci left: 2.925223e-01	ci right 2.967398e-01	k: 53033	n:180000
KS ci ratio: 1.249422e-01	ci left: 5.098945e-03	ci right 5.783798e-03	k: 978	n:180000
ELF3   180000 perm   51 sec   (3518 perm/sec)   p_kst 5.433333e-03   p_cons 2.946278e-01   p_joint 1.822778e-02

Joint ci ratio: 8.533464e-02	ci left: 1.051524e-02	ci right 1.145766e-02	k: 2086	n:190000
Cons ci ratio: 1.446899e-02	ci left: 2.766427e-01	ci right 2.806798e-01	k: 52945	n:190000
KS ci ratio: 1.220494e-01	ci left: 5.070302e-03	ci right 5.734400e-03	k: 1025	n:190000
ELF3   190000 perm   55 sec   (3464 perm/sec)   p_kst 5.394737e-03   p_cons 2.786579e-01   p_joint 1.097895e-02

Joint ci ratio: 8.315177e-02	ci left: 1.053279e-02	ci right 1.145147e-02	k: 2197	n:200000
Cons ci ratio: 1.411784e-02	ci left: 2.762618e-01	ci right 2.801947e-01	k: 55645	n:200000
KS ci ratio: 1.194605e-01	ci left: 5.034985e-03	ci right 5.679480e-03	k: 1070	n:200000
ELF3   200000 perm   59 sec   (3414 perm/sec)   p_kst 5.350000e-03   p_cons 2.782250e-01   p_joint 1.098500e-02

Joint ci ratio: 7.793176e-02	ci left: 1.144059e-02	ci right 1.237296e-02	k: 2499	n:210000
Cons ci ratio: 1.378174e-02	ci left: 2.761891e-01	ci right 2.800266e-01	k: 58402	n:210000
KS ci ratio: 1.160921e-01	ci left: 5.086394e-03	ci right 5.717853e-03	k: 1133	n:210000
ELF3   210000 perm   62 sec   (3363 perm/sec)   p_kst 5.395238e-03   p_cons 2.781048e-01   p_joint 1.190000e-02

Joint ci ratio: 6.848707e-02	ci left: 1.416995e-02	ci right 1.517926e-02	k: 3227	n:220000
Cons ci ratio: 1.346504e-02	ci left: 2.762284e-01	ci right 2.799775e-01	k: 61182	n:220000
KS ci ratio: 1.137605e-01	ci left: 5.062686e-03	ci right 5.677730e-03	k: 1180	n:220000
ELF3   220000 perm   66 sec   (3314 perm/sec)   p_kst 5.363636e-03   p_cons 2.781000e-01   p_joint 1.466818e-02

Joint ci ratio: 6.722192e-02	ci left: 1.407955e-02	ci right 1.506317e-02	k: 3350	n:230000
Cons ci ratio: 1.316480e-02	ci left: 2.763997e-01	ci right 2.800668e-01	k: 63993	n:230000
KS ci ratio: 1.110198e-01	ci left: 5.091884e-03	ci right 5.694597e-03	k: 1239	n:230000
ELF3   230000 perm   70 sec   (3268 perm/sec)   p_kst 5.386957e-03   p_cons 2.782304e-01   p_joint 1.456522e-02

Joint ci ratio: 6.756026e-02	ci left: 1.336575e-02	ci right 1.430438e-02	k: 3319	n:240000
Cons ci ratio: 1.287991e-02	ci left: 2.766781e-01	ci right 2.802689e-01	k: 66833	n:240000
KS ci ratio: 1.091033e-01	ci left: 5.058003e-03	ci right 5.645707e-03	k: 1283	n:240000
ELF3   240000 perm   75 sec   (3220 perm/sec)   p_kst 5.345833e-03   p_cons 2.784708e-01   p_joint 1.382917e-02

Joint ci ratio: 7.183212e-02	ci left: 1.134894e-02	ci right 1.219843e-02	k: 2942	n:250000
Cons ci ratio: 1.260284e-02	ci left: 2.772504e-01	ci right 2.807707e-01	k: 69752	n:250000
KS ci ratio: 1.071206e-01	ci left: 5.042489e-03	ci right 5.617071e-03	k: 1331	n:250000
ELF3   250000 perm   79 sec   (3172 perm/sec)   p_kst 5.324000e-03   p_cons 2.790080e-01   p_joint 1.176800e-02

Joint ci ratio: 7.125102e-02	ci left: 1.109748e-02	ci right 1.192115e-02	k: 2991	n:260000
Cons ci ratio: 1.235505e-02	ci left: 2.773841e-01	ci right 2.808363e-01	k: 72568	n:260000
KS ci ratio: 1.044838e-01	ci left: 5.103173e-03	ci right 5.669477e-03	k: 1399	n:260000
ELF3   260000 perm   83 sec   (3130 perm/sec)   p_kst 5.380769e-03   p_cons 2.791077e-01   p_joint 1.150385e-02

Joint ci ratio: 7.138712e-02	ci left: 1.065000e-02	ci right 1.144203e-02	k: 2981	n:270000
Cons ci ratio: 1.212890e-02	ci left: 2.772570e-01	ci right 2.806440e-01	k: 75316	n:270000
KS ci ratio: 1.024897e-01	ci left: 5.112599e-03	ci right 5.668469e-03	k: 1454	n:270000
ELF3   270000 perm   87 sec   (3088 perm/sec)   p_kst 5.385185e-03   p_cons 2.789481e-01   p_joint 1.104074e-02

Joint ci ratio: 7.058056e-02	ci left: 1.051167e-02	ci right 1.128422e-02	k: 3050	n:280000
Cons ci ratio: 1.190892e-02	ci left: 2.773357e-01	ci right 2.806618e-01	k: 78119	n:280000
KS ci ratio: 1.005054e-01	ci left: 5.131894e-03	ci right 5.678420e-03	k: 1512	n:280000
ELF3   280000 perm   92 sec   (3050 perm/sec)   p_kst 5.400000e-03   p_cons 2.789964e-01   p_joint 1.089286e-02

Joint ci ratio: 6.257471e-02	ci left: 1.293374e-02	ci right 1.377258e-02	k: 3871	n:290000
Cons ci ratio: 1.170240e-02	ci left: 2.773440e-01	ci right 2.806121e-01	k: 80903	n:290000
KS ci ratio: 9.853742e-02	ci left: 5.160045e-03	ci right 5.698187e-03	k: 1573	n:290000
ELF3   290000 perm   96 sec   (3012 perm/sec)   p_kst 5.424138e-03   p_cons 2.789759e-01   p_joint 1.334828e-02

Outputting figure to mutsig2_images.part000000000056/ELF3.6_1148_290000_0.0054241_0.27898_0.013348.png
                gene_name: ELF3
               theta_stop: 0.099 
                    nperm: 290000 
                     p_ks: 0.0054 
        ci_ks_bounds_left: 0.0052 
       ci_ks_bounds_right: 0.0057 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 27 percent done.
EMILIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.729533e-02	ci left: 1.604251e-01	ci right 1.751689e-01	k: 1677	n:10000
Cons ci ratio: 4.208251e-02	ci left: 4.546864e-01	ci right 4.743342e-01	k: 4645	n:10000
KS ci ratio: 1.049610e-01	ci left: 1.159392e-01	ci right 1.288817e-01	k: 1223	n:10000
EMILIN2   10000 perm   2 sec   (4551 perm/sec)   p_kst 1.223000e-01   p_cons 4.645000e-01   p_joint 1.677000e-01

Joint ci ratio: 6.545699e-02	ci left: 1.470502e-01	ci right 1.570512e-01	k: 3040	n:20000
Cons ci ratio: 2.982515e-02	ci left: 4.564698e-01	ci right 4.703408e-01	k: 9268	n:20000
KS ci ratio: 7.254146e-02	ci left: 1.227593e-01	ci right 1.320493e-01	k: 2547	n:20000
EMILIN2   20000 perm   5 sec   (4044 perm/sec)   p_kst 1.273500e-01   p_cons 4.634000e-01   p_joint 1.520000e-01

Outputting figure to mutsig2_images.part000000000056/EMILIN2.6_3194_20000_0.12735_0.4634_0.152.png
                gene_name: EMILIN2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 29 percent done.
EMR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.049311e-02	ci left: 4.738613e-01	ci right 4.935482e-01	k: 4837	n:10000
Cons ci ratio: 1.153289e-02	ci left: 9.149216e-01	ci right 9.256321e-01	k: 9204	n:10000
KS ci ratio: 5.614730e-02	ci left: 3.184024e-01	ci right 3.368981e-01	k: 3276	n:10000
EMR2   10000 perm   2 sec   (4926 perm/sec)   p_kst 3.276000e-01   p_cons 9.204000e-01   p_joint 4.837000e-01

Outputting figure to mutsig2_images.part000000000056/EMR2.6_2552_10000_0.3276_0.9204_0.4837.png
                gene_name: EMR2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 31 percent done.
EIF4A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.307207e-01	ci left: 7.708281e-02	ci right 8.796184e-02	k: 824	n:10000
Cons ci ratio: 1.612577e-02	ci left: 8.482515e-01	ci right 8.621409e-01	k: 8553	n:10000
KS ci ratio: 1.745679e-01	ci left: 4.379660e-02	ci right 5.226918e-02	k: 479	n:10000
EIF4A2   10000 perm   2 sec   (5740 perm/sec)   p_kst 4.790000e-02   p_cons 8.553000e-01   p_joint 8.240000e-02

Joint ci ratio: 8.824551e-02	ci left: 8.582360e-02	ci right 9.379612e-02	k: 1795	n:20000
Cons ci ratio: 1.135577e-02	ci left: 8.513617e-01	ci right 8.611345e-01	k: 17126	n:20000
KS ci ratio: 1.248127e-01	ci left: 4.405941e-02	ci right 4.997318e-02	k: 939	n:20000
EIF4A2   20000 perm   4 sec   (5040 perm/sec)   p_kst 4.695000e-02   p_cons 8.563000e-01   p_joint 8.975000e-02

Joint ci ratio: 8.931561e-02	ci left: 5.763236e-02	ci right 6.305317e-02	k: 1809	n:30000
Cons ci ratio: 9.574798e-03	ci left: 8.440892e-01	ci right 8.522432e-01	k: 25446	n:30000
KS ci ratio: 1.032226e-01	ci left: 4.349433e-02	ci right 4.826078e-02	k: 1375	n:30000
EIF4A2   30000 perm   6 sec   (4795 perm/sec)   p_kst 4.583333e-02   p_cons 8.482000e-01   p_joint 6.030000e-02

Joint ci ratio: 7.649887e-02	ci left: 5.923869e-02	ci right 6.397520e-02	k: 2463	n:40000
Cons ci ratio: 8.325713e-03	ci left: 8.435859e-01	ci right 8.506636e-01	k: 33886	n:40000
KS ci ratio: 9.090124e-02	ci left: 4.240205e-02	ci right 4.646442e-02	k: 1776	n:40000
EIF4A2   40000 perm   9 sec   (4625 perm/sec)   p_kst 4.440000e-02   p_cons 8.471500e-01   p_joint 6.157500e-02

Outputting figure to mutsig2_images.part000000000056/EIF4A2.5_1268_40000_0.0444_0.84715_0.061575.png
                gene_name: EIF4A2
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.064 

Current progress: 33 percent done.
EIF5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.460821e-02	ci left: 7.083616e-01	ci right 7.261116e-01	k: 7173	n:10000
Cons ci ratio: 7.417707e-02	ci left: 2.101378e-01	ci right 2.264266e-01	k: 2182	n:10000
KS ci ratio: 1.347312e-02	ci left: 8.882113e-01	ci right 9.003580e-01	k: 8944	n:10000
EIF5B   10000 perm   2 sec   (4473 perm/sec)   p_kst 8.944000e-01   p_cons 2.182000e-01   p_joint 7.173000e-01

Outputting figure to mutsig2_images.part000000000056/EIF5B.4_3759_10000_0.8944_0.2182_0.7173.png
                gene_name: EIF5B
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 35 percent done.
ELAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.057999e-01	ci left: 1.142783e-01	ci right 1.271436e-01	k: 1206	n:10000
Cons ci ratio: 3.252572e-02	ci left: 5.824925e-01	ci right 6.018537e-01	k: 5922	n:10000
KS ci ratio: 2.331010e-01	ci left: 2.428868e-02	ci right 3.079048e-02	k: 274	n:10000
ELAC1   10000 perm   2 sec   (6106 perm/sec)   p_kst 2.740000e-02   p_cons 5.922000e-01   p_joint 1.206000e-01

Joint ci ratio: 1.025352e-01	ci left: 6.459783e-02	ci right 7.162836e-02	k: 1361	n:20000
Cons ci ratio: 2.338580e-02	ci left: 5.772825e-01	ci right 5.909930e-01	k: 11683	n:20000
KS ci ratio: 1.646773e-01	ci left: 2.527745e-02	ci right 2.986128e-02	k: 550	n:20000
ELAC1   20000 perm   4 sec   (5364 perm/sec)   p_kst 2.750000e-02   p_cons 5.841500e-01   p_joint 6.805000e-02

Joint ci ratio: 8.805403e-02	ci left: 5.923168e-02	ci right 6.472020e-02	k: 1858	n:30000
Cons ci ratio: 1.900911e-02	ci left: 5.807356e-01	ci right 5.919144e-01	k: 17590	n:30000
KS ci ratio: 1.298848e-01	ci left: 2.754976e-02	ci right 3.140874e-02	k: 883	n:30000
ELAC1   30000 perm   6 sec   (5109 perm/sec)   p_kst 2.943333e-02   p_cons 5.863333e-01   p_joint 6.193333e-02

Joint ci ratio: 7.227658e-02	ci left: 6.601886e-02	ci right 7.099401e-02	k: 2739	n:40000
Cons ci ratio: 1.686653e-02	ci left: 5.696621e-01	ci right 5.793771e-01	k: 22981	n:40000
KS ci ratio: 1.109732e-01	ci left: 2.856889e-02	ci right 3.194977e-02	k: 1209	n:40000
ELAC1   40000 perm   8 sec   (4941 perm/sec)   p_kst 3.022500e-02   p_cons 5.745250e-01   p_joint 6.847500e-02

Joint ci ratio: 6.873249e-02	ci left: 5.897678e-02	ci right 6.319436e-02	k: 3053	n:50000
Cons ci ratio: 1.508242e-02	ci left: 5.702923e-01	ci right 5.789791e-01	k: 28732	n:50000
KS ci ratio: 9.870388e-02	ci left: 2.906861e-02	ci right 3.210621e-02	k: 1528	n:50000
ELAC1   50000 perm   10 sec   (4811 perm/sec)   p_kst 3.056000e-02   p_cons 5.746400e-01   p_joint 6.106000e-02

Outputting figure to mutsig2_images.part000000000056/ELAC1.4_1104_50000_0.03056_0.57464_0.06106.png
                gene_name: ELAC1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.063 

Current progress: 37 percent done.
ELF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.235153e-01	ci left: 8.582142e-02	ci right 9.721783e-02	k: 914	n:10000
Cons ci ratio: 1.617042e-01	ci left: 5.099641e-02	ci right 6.006470e-02	k: 554	n:10000
KS ci ratio: 8.682941e-02	ci left: 1.618987e-01	ci right 1.766945e-01	k: 1692	n:10000
ELF4   10000 perm   2 sec   (5676 perm/sec)   p_kst 1.692000e-01   p_cons 5.540000e-02   p_joint 9.140000e-02

Joint ci ratio: 9.016148e-02	ci left: 8.244363e-02	ci right 9.027712e-02	k: 1726	n:20000
Cons ci ratio: 1.122713e-01	ci left: 5.421584e-02	ci right 6.071357e-02	k: 1148	n:20000
KS ci ratio: 6.081569e-02	ci left: 1.667434e-01	ci right 1.772521e-01	k: 3439	n:20000
ELF4   20000 perm   4 sec   (5016 perm/sec)   p_kst 1.719500e-01   p_cons 5.740000e-02   p_joint 8.630000e-02

Joint ci ratio: 6.336565e-02	ci left: 1.095370e-01	ci right 1.167381e-01	k: 3393	n:30000
Cons ci ratio: 9.292039e-02	ci left: 5.339206e-02	ci right 5.862767e-02	k: 1679	n:30000
KS ci ratio: 4.971424e-02	ci left: 1.673818e-01	ci right 1.759485e-01	k: 5149	n:30000
ELF4   30000 perm   6 sec   (4767 perm/sec)   p_kst 1.716333e-01   p_cons 5.596667e-02   p_joint 1.131000e-01

Outputting figure to mutsig2_images.part000000000056/ELF4.4_2024_30000_0.17163_0.055967_0.1131.png
                gene_name: ELF4
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 38 percent done.
ELF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.777680e-02	ci left: 6.563567e-01	ci right 6.749467e-01	k: 6657	n:10000
Cons ci ratio: 5.214247e-02	ci left: 3.515781e-01	ci right 3.705029e-01	k: 3610	n:10000
KS ci ratio: 4.537380e-02	ci left: 4.175767e-01	ci right 4.370657e-01	k: 4273	n:10000
ELF5   10000 perm   2 sec   (5867 perm/sec)   p_kst 4.273000e-01   p_cons 3.610000e-01   p_joint 6.657000e-01

Outputting figure to mutsig2_images.part000000000056/ELF5.4_826_10000_0.4273_0.361_0.6657.png
                gene_name: ELF5
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 40 percent done.
ELK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.330361e-02	ci left: 4.405144e-01	ci right 4.601146e-01	k: 4503	n:10000
Cons ci ratio: 6.290595e-02	ci left: 2.708188e-01	ci right 2.885097e-01	k: 2796	n:10000
KS ci ratio: 6.901795e-02	ci left: 2.354100e-01	ci right 2.523395e-01	k: 2438	n:10000
ELK3   10000 perm   2 sec   (6007 perm/sec)   p_kst 2.438000e-01   p_cons 2.796000e-01   p_joint 4.503000e-01

Outputting figure to mutsig2_images.part000000000056/ELK3.4_1240_10000_0.2438_0.2796_0.4503.png
                gene_name: ELK3
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 42 percent done.
ELL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.340863e-02	ci left: 5.694520e-01	ci right 5.889019e-01	k: 5792	n:10000
Cons ci ratio: 2.768949e-02	ci left: 6.577660e-01	ci right 6.763366e-01	k: 6671	n:10000
KS ci ratio: 4.298147e-02	ci left: 4.442063e-01	ci right 4.638205e-01	k: 4540	n:10000
ELL3   10000 perm   2 sec   (5082 perm/sec)   p_kst 4.540000e-01   p_cons 6.671000e-01   p_joint 5.792000e-01

Outputting figure to mutsig2_images.part000000000056/ELL3.4_1238_10000_0.454_0.6671_0.5792.png
                gene_name: ELL3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 44 percent done.
ELMOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.680497e-01	ci left: 4.724933e-02	ci right 5.601420e-02	k: 515	n:10000
Cons ci ratio: 2.322914e-02	ci left: 7.313849e-01	ci right 7.486751e-01	k: 7401	n:10000
KS ci ratio: 3.176417e-01	ci left: 1.261754e-02	ci right 1.747097e-02	k: 149	n:10000
ELMOD1   10000 perm   2 sec   (6491 perm/sec)   p_kst 1.490000e-02   p_cons 7.401000e-01   p_joint 5.150000e-02

Joint ci ratio: 1.554863e-01	ci left: 2.840079e-02	ci right 3.323688e-02	k: 615	n:20000
Cons ci ratio: 1.636592e-02	ci left: 7.353725e-01	ci right 7.475572e-01	k: 14830	n:20000
KS ci ratio: 2.317754e-01	ci left: 1.246477e-02	ci right 1.577870e-02	k: 281	n:20000
ELMOD1   20000 perm   4 sec   (5417 perm/sec)   p_kst 1.405000e-02   p_cons 7.415000e-01   p_joint 3.075000e-02

Joint ci ratio: 1.668478e-01	ci left: 1.655765e-02	ci right 1.960336e-02	k: 541	n:30000
Cons ci ratio: 1.337556e-02	ci left: 7.361370e-01	ci right 7.460829e-01	k: 22234	n:30000
KS ci ratio: 1.951809e-01	ci left: 1.197088e-02	ci right 1.459130e-02	k: 397	n:30000
ELMOD1   30000 perm   6 sec   (5116 perm/sec)   p_kst 1.323333e-02   p_cons 7.411333e-01   p_joint 1.803333e-02

Joint ci ratio: 1.253906e-01	ci left: 2.235264e-02	ci right 2.536703e-02	k: 953	n:40000
Cons ci ratio: 1.157781e-02	ci left: 7.370037e-01	ci right 7.456113e-01	k: 29653	n:40000
KS ci ratio: 1.655371e-01	ci left: 1.267965e-02	ci right 1.499172e-02	k: 552	n:40000
ELMOD1   40000 perm   8 sec   (4908 perm/sec)   p_kst 1.380000e-02   p_cons 7.413250e-01   p_joint 2.382500e-02

Joint ci ratio: 9.451282e-02	ci left: 3.168587e-02	ci right 3.484862e-02	k: 1662	n:50000
Cons ci ratio: 1.034053e-02	ci left: 7.380204e-01	ci right 7.457115e-01	k: 37094	n:50000
KS ci ratio: 1.439213e-01	ci left: 1.356691e-02	ci right 1.568999e-02	k: 730	n:50000
ELMOD1   50000 perm   11 sec   (4760 perm/sec)   p_kst 1.460000e-02   p_cons 7.418800e-01   p_joint 3.324000e-02

Joint ci ratio: 9.519647e-02	ci left: 2.617347e-02	ci right 2.880584e-02	k: 1648	n:60000
Cons ci ratio: 9.480579e-03	ci left: 7.366880e-01	ci right 7.437221e-01	k: 44413	n:60000
KS ci ratio: 1.312452e-01	ci left: 1.368771e-02	ci right 1.562632e-02	k: 878	n:60000
ELMOD1   60000 perm   13 sec   (4639 perm/sec)   p_kst 1.463333e-02   p_cons 7.402167e-01   p_joint 2.746667e-02

Joint ci ratio: 9.058107e-02	ci left: 2.487558e-02	ci right 2.724964e-02	k: 1823	n:70000
Cons ci ratio: 8.744444e-03	ci left: 7.383974e-01	ci right 7.448969e-01	k: 51916	n:70000
KS ci ratio: 1.210611e-01	ci left: 1.386305e-02	ci right 1.566322e-02	k: 1032	n:70000
ELMOD1   70000 perm   15 sec   (4533 perm/sec)   p_kst 1.474286e-02   p_cons 7.416571e-01   p_joint 2.604286e-02

Joint ci ratio: 7.439876e-02	ci left: 3.228836e-02	ci right 3.479562e-02	k: 2682	n:80000
Cons ci ratio: 8.167028e-03	ci left: 7.392041e-01	ci right 7.452784e-01	k: 59380	n:80000
KS ci ratio: 1.127380e-01	ci left: 1.404754e-02	ci right 1.573791e-02	k: 1190	n:80000
ELMOD1   80000 perm   18 sec   (4440 perm/sec)   p_kst 1.487500e-02   p_cons 7.422500e-01   p_joint 3.352500e-02

Joint ci ratio: 7.959189e-02	ci left: 2.519888e-02	ci right 2.729848e-02	k: 2361	n:90000
Cons ci ratio: 7.707664e-03	ci left: 7.389944e-01	ci right 7.447234e-01	k: 66768	n:90000
KS ci ratio: 1.078905e-01	ci left: 1.367507e-02	ci right 1.524535e-02	k: 1300	n:90000
ELMOD1   90000 perm   21 sec   (4344 perm/sec)   p_kst 1.444444e-02   p_cons 7.418667e-01   p_joint 2.623333e-02

Joint ci ratio: 7.423121e-02	ci left: 2.612198e-02	ci right 2.814557e-02	k: 2712	n:100000
Cons ci ratio: 7.316652e-03	ci left: 7.389049e-01	ci right 7.443410e-01	k: 74163	n:100000
KS ci ratio: 1.009308e-01	ci left: 1.410944e-02	ci right 1.561889e-02	k: 1485	n:100000
ELMOD1   100000 perm   23 sec   (4262 perm/sec)   p_kst 1.485000e-02   p_cons 7.416300e-01   p_joint 2.712000e-02

Joint ci ratio: 7.608318e-02	ci left: 2.266636e-02	ci right 2.446797e-02	k: 2591	n:110000
Cons ci ratio: 6.991927e-03	ci left: 7.381631e-01	ci right 7.433514e-01	k: 81484	n:110000
KS ci ratio: 9.619194e-02	ci left: 1.415681e-02	ci right 1.559621e-02	k: 1635	n:110000
ELMOD1   110000 perm   26 sec   (4177 perm/sec)   p_kst 1.486364e-02   p_cons 7.407636e-01   p_joint 2.355455e-02

Outputting figure to mutsig2_images.part000000000056/ELMOD1.4_1049_110000_0.014864_0.74076_0.023555.png
                gene_name: ELMOD1
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.024 

Current progress: 46 percent done.
ELOVL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.344096e-02	ci left: 2.674529e-01	ci right 2.850777e-01	k: 2762	n:10000
Cons ci ratio: 5.921521e-02	ci left: 2.955875e-01	ci right 3.137265e-01	k: 3046	n:10000
KS ci ratio: 6.214964e-02	ci left: 2.756709e-01	ci right 2.934548e-01	k: 2845	n:10000
ELOVL4   10000 perm   2 sec   (6306 perm/sec)   p_kst 2.845000e-01   p_cons 3.046000e-01   p_joint 2.762000e-01

Outputting figure to mutsig2_images.part000000000056/ELOVL4.4_969_10000_0.2845_0.3046_0.2762.png
                gene_name: ELOVL4
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 48 percent done.
ELP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.662992e-02	ci left: 1.993910e-01	ci right 2.153799e-01	k: 2073	n:10000
Cons ci ratio: 1.052060e-01	ci left: 1.154507e-01	ci right 1.283705e-01	k: 1218	n:10000
KS ci ratio: 7.116072e-02	ci left: 2.244469e-01	ci right 2.411090e-01	k: 2327	n:10000
ELP2   10000 perm   2 sec   (5242 perm/sec)   p_kst 2.327000e-01   p_cons 1.218000e-01   p_joint 2.073000e-01

Joint ci ratio: 5.756784e-02	ci left: 1.827541e-01	ci right 1.936367e-01	k: 3763	n:20000
Cons ci ratio: 7.483080e-02	ci left: 1.161170e-01	ci right 1.251936e-01	k: 2412	n:20000
KS ci ratio: 5.071637e-02	ci left: 2.241327e-01	ci right 2.358459e-01	k: 4599	n:20000
ELP2   20000 perm   4 sec   (4681 perm/sec)   p_kst 2.299500e-01   p_cons 1.206000e-01   p_joint 1.881500e-01

Outputting figure to mutsig2_images.part000000000056/ELP2.4_2569_20000_0.22995_0.1206_0.18815.png
                gene_name: ELP2
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 50 percent done.
EME1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.984913e-02	ci left: 1.526681e-01	ci right 1.671306e-01	k: 1598	n:10000
Cons ci ratio: 2.847290e-01	ci left: 1.594989e-02	ci right 2.133572e-02	k: 185	n:10000
KS ci ratio: 1.124744e-02	ci left: 9.186317e-01	ci right 9.291198e-01	k: 9240	n:10000
EME1   10000 perm   2 sec   (5405 perm/sec)   p_kst 9.240000e-01   p_cons 1.850000e-02   p_joint 1.598000e-01

Joint ci ratio: 1.017755e-01	ci left: 6.552521e-02	ci right 7.260070e-02	k: 1380	n:20000
Cons ci ratio: 2.095217e-01	ci left: 1.539613e-02	ci right 1.904617e-02	k: 343	n:20000
KS ci ratio: 8.089135e-03	ci left: 9.177370e-01	ci right 9.252399e-01	k: 18431	n:20000
EME1   20000 perm   4 sec   (4709 perm/sec)   p_kst 9.215500e-01   p_cons 1.715000e-02   p_joint 6.900000e-02

Joint ci ratio: 5.549484e-02	ci left: 1.386284e-01	ci right 1.465743e-01	k: 4277	n:30000
Cons ci ratio: 1.681158e-01	ci left: 1.630199e-02	ci right 1.932576e-02	k: 533	n:30000
KS ci ratio: 6.736541e-03	ci left: 9.154822e-01	ci right 9.217031e-01	k: 27559	n:30000
EME1   30000 perm   7 sec   (4454 perm/sec)   p_kst 9.186333e-01   p_cons 1.776667e-02   p_joint 1.425667e-01

Joint ci ratio: 5.794212e-02	ci left: 9.969216e-02	ci right 1.056657e-01	k: 4106	n:40000
Cons ci ratio: 1.444611e-01	ci left: 1.676790e-02	ci right 1.940272e-02	k: 722	n:40000
KS ci ratio: 5.875978e-03	ci left: 9.148117e-01	ci right 9.202276e-01	k: 36702	n:40000
EME1   40000 perm   9 sec   (4351 perm/sec)   p_kst 9.175500e-01   p_cons 1.805000e-02   p_joint 1.026500e-01

Joint ci ratio: 5.000308e-02	ci left: 1.067163e-01	ci right 1.122091e-01	k: 5472	n:50000
Cons ci ratio: 1.267851e-01	ci left: 1.756939e-02	ci right 1.996694e-02	k: 937	n:50000
KS ci ratio: 5.250318e-03	ci left: 9.152568e-01	ci right 9.200946e-01	k: 45885	n:50000
EME1   50000 perm   12 sec   (4248 perm/sec)   p_kst 9.177000e-01   p_cons 1.874000e-02   p_joint 1.094400e-01

Joint ci ratio: 5.142782e-02	ci left: 8.600840e-02	ci right 9.056485e-02	k: 5296	n:60000
Cons ci ratio: 1.154567e-01	ci left: 1.776062e-02	ci right 1.995293e-02	k: 1130	n:60000
KS ci ratio: 4.774799e-03	ci left: 9.160460e-01	ci right 9.204468e-01	k: 55096	n:60000
EME1   60000 perm   14 sec   (4145 perm/sec)   p_kst 9.182667e-01   p_cons 1.883333e-02   p_joint 8.826667e-02

Joint ci ratio: 3.973620e-02	ci left: 1.196265e-01	ci right 1.244906e-01	k: 8543	n:70000
Cons ci ratio: 1.060153e-01	ci left: 1.814059e-02	ci right 2.018526e-02	k: 1340	n:70000
KS ci ratio: 4.428830e-03	ci left: 9.159286e-01	ci right 9.200081e-01	k: 64259	n:70000
EME1   70000 perm   17 sec   (4017 perm/sec)   p_kst 9.179857e-01   p_cons 1.914286e-02   p_joint 1.220429e-01

Joint ci ratio: 3.852980e-02	ci left: 1.123509e-01	ci right 1.167771e-01	k: 9164	n:80000
Cons ci ratio: 1.053485e-01	ci left: 1.611551e-02	ci right 1.791976e-02	k: 1360	n:80000
KS ci ratio: 4.136863e-03	ci left: 9.162794e-01	ci right 9.200902e-01	k: 73456	n:80000
EME1   80000 perm   21 sec   (3868 perm/sec)   p_kst 9.182000e-01   p_cons 1.700000e-02   p_joint 1.145500e-01

Joint ci ratio: 3.869541e-02	ci left: 1.003715e-01	ci right 1.043431e-01	k: 9211	n:90000
Cons ci ratio: 9.877131e-02	ci left: 1.634977e-02	ci right 1.805933e-02	k: 1547	n:90000
KS ci ratio: 3.880023e-03	ci left: 9.171760e-01	ci right 9.207525e-01	k: 82708	n:90000
EME1   90000 perm   24 sec   (3812 perm/sec)   p_kst 9.189778e-01   p_cons 1.718889e-02   p_joint 1.023444e-01

Outputting figure to mutsig2_images.part000000000056/EME1.4_1784_90000_0.91898_0.017189_0.10234.png
                gene_name: EME1
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.10 

Current progress: 52 percent done.
EML2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.891855e-02	ci left: 8.032880e-01	ci right 8.187304e-01	k: 8111	n:10000
Cons ci ratio: 7.982246e-02	ci left: 1.864866e-01	ci right 2.020919e-01	k: 1942	n:10000
KS ci ratio: 2.087337e-02	ci left: 7.708384e-01	ci right 7.871988e-01	k: 7791	n:10000
EML2   10000 perm   2 sec   (5629 perm/sec)   p_kst 7.791000e-01   p_cons 1.942000e-01   p_joint 8.111000e-01

Outputting figure to mutsig2_images.part000000000056/EML2.4_2026_10000_0.7791_0.1942_0.8111.png
                gene_name: EML2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 54 percent done.
EMX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.850220e-02	ci left: 1.566932e-01	ci right 1.713031e-01	k: 1639	n:10000
Cons ci ratio: 7.284938e-03	ci left: 9.629948e-01	ci right 9.701301e-01	k: 9667	n:10000
KS ci ratio: 1.035678e-01	ci left: 1.187734e-01	ci right 1.318457e-01	k: 1252	n:10000
EMX2   10000 perm   2 sec   (6430 perm/sec)   p_kst 1.252000e-01   p_cons 9.667000e-01   p_joint 1.639000e-01

Joint ci ratio: 6.306507e-02	ci left: 1.567700e-01	ci right 1.670285e-01	k: 3237	n:20000
Cons ci ratio: 5.258641e-03	ci left: 9.626700e-01	ci right 9.677936e-01	k: 19306	n:20000
KS ci ratio: 7.458496e-02	ci left: 1.168056e-01	ci right 1.259048e-01	k: 2426	n:20000
EMX2   20000 perm   4 sec   (5620 perm/sec)   p_kst 1.213000e-01   p_cons 9.653000e-01   p_joint 1.618500e-01

Outputting figure to mutsig2_images.part000000000056/EMX2.4_771_20000_0.1213_0.9653_0.16185.png
                gene_name: EMX2
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 56 percent done.
EIF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.158783e-02	ci left: 9.142005e-01	ci right 9.249535e-01	k: 9197	n:10000
KS ci ratio: 2.442025e-02	ci left: 7.114903e-01	ci right 7.291812e-01	k: 7204	n:10000
EIF5   10000 perm   2 sec   (5976 perm/sec)   p_kst 7.204000e-01   p_cons 9.197000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/EIF5.3_1336_10000_0.7204_0.9197_1.png
                gene_name: EIF5
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
ELAVL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.384225e-02	ci left: 5.631348e-01	ci right 5.826227e-01	k: 5729	n:10000
Cons ci ratio: 8.290783e-02	ci left: 1.750712e-01	ci right 1.903141e-01	k: 1826	n:10000
KS ci ratio: 2.182305e-02	ci left: 7.549442e-01	ci right 7.717021e-01	k: 7634	n:10000
ELAVL1   10000 perm   2 sec   (5796 perm/sec)   p_kst 7.634000e-01   p_cons 1.826000e-01   p_joint 5.729000e-01

Outputting figure to mutsig2_images.part000000000056/ELAVL1.3_1001_10000_0.7634_0.1826_0.5729.png
                gene_name: ELAVL1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 60 percent done.
ELL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.450408e-02	ci left: 4.270484e-01	ci right 4.465885e-01	k: 4368	n:10000
Cons ci ratio: 8.555495e-02	ci left: 1.660256e-01	ci right 1.809651e-01	k: 1734	n:10000
KS ci ratio: 2.555112e-02	ci left: 6.927260e-01	ci right 7.107564e-01	k: 7018	n:10000
ELL   10000 perm   2 sec   (5435 perm/sec)   p_kst 7.018000e-01   p_cons 1.734000e-01   p_joint 4.368000e-01

Outputting figure to mutsig2_images.part000000000056/ELL.3_1914_10000_0.7018_0.1734_0.4368.png
                gene_name: ELL
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 62 percent done.
ELL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.361522e-02	ci left: 8.861619e-01	ci right 8.984085e-01	k: 8924	n:10000
KS ci ratio: 4.216718e-02	ci left: 4.536882e-01	ci right 4.733331e-01	k: 4635	n:10000
ELL2   10000 perm   2 sec   (6110 perm/sec)   p_kst 4.635000e-01   p_cons 8.924000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/ELL2.3_1971_10000_0.4635_0.8924_1.png
                gene_name: ELL2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
ELMO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.325116e-02	ci left: 2.686408e-01	ci right 2.862890e-01	k: 2774	n:10000
Cons ci ratio: 9.338490e-02	ci left: 1.427601e-01	ci right 1.568446e-01	k: 1497	n:10000
KS ci ratio: 6.127603e-02	ci left: 2.814158e-01	ci right 2.993065e-01	k: 2903	n:10000
ELMO2   10000 perm   2 sec   (5656 perm/sec)   p_kst 2.903000e-01   p_cons 1.497000e-01   p_joint 2.774000e-01

Outputting figure to mutsig2_images.part000000000056/ELMO2.3_2243_10000_0.2903_0.1497_0.2774.png
                gene_name: ELMO2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 65 percent done.
ELMOD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.309272e-02	ci left: 1.435445e-01	ci right 1.576597e-01	k: 1505	n:10000
Cons ci ratio: 3.559658e-02	ci left: 5.381826e-01	ci right 5.577894e-01	k: 5480	n:10000
KS ci ratio: 1.655280e-01	ci left: 4.868974e-02	ci right 5.757286e-02	k: 530	n:10000
ELMOD3   10000 perm   2 sec   (5821 perm/sec)   p_kst 5.300000e-02   p_cons 5.480000e-01   p_joint 1.505000e-01

Joint ci ratio: 6.586617e-02	ci left: 1.454720e-01	ci right 1.554299e-01	k: 3008	n:20000
Cons ci ratio: 2.601700e-02	ci left: 5.246552e-01	ci right 5.385357e-01	k: 10632	n:20000
KS ci ratio: 1.196283e-01	ci left: 4.789434e-02	ci right 5.403704e-02	k: 1018	n:20000
ELMOD3   20000 perm   4 sec   (5089 perm/sec)   p_kst 5.090000e-02   p_cons 5.316000e-01   p_joint 1.504000e-01

Joint ci ratio: 4.764453e-02	ci left: 1.796954e-01	ci right 1.884992e-01	k: 5522	n:30000
Cons ci ratio: 2.121344e-02	ci left: 5.266343e-01	ci right 5.379594e-01	k: 15969	n:30000
KS ci ratio: 9.749212e-02	ci left: 4.863513e-02	ci right 5.365225e-02	k: 1533	n:30000
ELMOD3   30000 perm   6 sec   (4819 perm/sec)   p_kst 5.110000e-02   p_cons 5.323000e-01   p_joint 1.840667e-01

Outputting figure to mutsig2_images.part000000000056/ELMOD3.3_1423_30000_0.0511_0.5323_0.18407.png
                gene_name: ELMOD3
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 67 percent done.
ELOVL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.542238e-02	ci left: 8.591667e-01	ci right 8.726194e-01	k: 8660	n:10000
Cons ci ratio: 5.895076e-02	ci left: 2.974712e-01	ci right 3.156416e-01	k: 3065	n:10000
KS ci ratio: 2.179286e-02	ci left: 7.554502e-01	ci right 7.721959e-01	k: 7639	n:10000
ELOVL2   10000 perm   2 sec   (5978 perm/sec)   p_kst 7.639000e-01   p_cons 3.065000e-01   p_joint 8.660000e-01

Outputting figure to mutsig2_images.part000000000056/ELOVL2.3_923_10000_0.7639_0.3065_0.866.png
                gene_name: ELOVL2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 69 percent done.
EMB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.457650e-02	ci left: 4.262506e-01	ci right 4.457867e-01	k: 4360	n:10000
Cons ci ratio: 1.162697e-02	ci left: 9.136856e-01	ci right 9.244688e-01	k: 9192	n:10000
KS ci ratio: 7.291787e-02	ci left: 2.159584e-01	ci right 2.324025e-01	k: 2241	n:10000
EMB   10000 perm   2 sec   (6369 perm/sec)   p_kst 2.241000e-01   p_cons 9.192000e-01   p_joint 4.360000e-01

Outputting figure to mutsig2_images.part000000000056/EMB.3_1020_10000_0.2241_0.9192_0.436.png
                gene_name: EMB
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 71 percent done.
EIF4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.384084e-02	ci left: 8.828843e-01	ci right 8.952880e-01	k: 8892	n:10000
Cons ci ratio: 2.955702e-02	ci left: 6.279891e-01	ci right 6.469308e-01	k: 6375	n:10000
KS ci ratio: 4.949261e-02	ci left: 3.758456e-01	ci right 3.950212e-01	k: 3854	n:10000
EIF4B   10000 perm   2 sec   (5602 perm/sec)   p_kst 3.854000e-01   p_cons 6.375000e-01   p_joint 8.892000e-01

Outputting figure to mutsig2_images.part000000000056/EIF4B.2_1896_10000_0.3854_0.6375_0.8892.png
                gene_name: EIF4B
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 73 percent done.
EIF4E2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.628610e-03	ci left: 9.896106e-01	ci right 9.932945e-01	k: 9916	n:10000
Cons ci ratio: 1.377760e-02	ci left: 8.838059e-01	ci right 8.961658e-01	k: 8901	n:10000
KS ci ratio: 3.659946e-02	ci left: 5.243644e-01	ci right 5.440157e-01	k: 5342	n:10000
EIF4E2   10000 perm   2 sec   (6418 perm/sec)   p_kst 5.342000e-01   p_cons 8.901000e-01   p_joint 9.916000e-01

Outputting figure to mutsig2_images.part000000000056/EIF4E2.2_766_10000_0.5342_0.8901_0.9916.png
                gene_name: EIF4E2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 75 percent done.
EIF5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.219310e-02	ci left: 1.776288e-01	ci right 1.929550e-01	k: 1852	n:10000
KS ci ratio: 3.848730e-02	ci left: 4.992504e-01	ci right 5.189443e-01	k: 5091	n:10000
EIF5A   10000 perm   2 sec   (6542 perm/sec)   p_kst 5.091000e-01   p_cons 1.852000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/EIF5A.2_575_10000_0.5091_0.1852_1.png
                gene_name: EIF5A
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
ELAVL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.522805e-02	ci left: 6.980709e-01	ci right 7.160083e-01	k: 7071	n:10000
Cons ci ratio: 7.881696e-02	ci left: 1.904255e-01	ci right 2.061507e-01	k: 1982	n:10000
KS ci ratio: 7.202812e-02	ci left: 2.202021e-01	ci right 2.367564e-01	k: 2284	n:10000
ELAVL3   10000 perm   2 sec   (6531 perm/sec)   p_kst 2.284000e-01   p_cons 1.982000e-01   p_joint 7.071000e-01

Outputting figure to mutsig2_images.part000000000056/ELAVL3.2_1132_10000_0.2284_0.1982_0.7071.png
                gene_name: ELAVL3
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 79 percent done.
ELAVL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.924902e-02	ci left: 4.894516e-01	ci right 5.091488e-01	k: 4993	n:10000
KS ci ratio: 9.863257e-02	ci left: 1.296319e-01	ci right 1.431807e-01	k: 1363	n:10000
ELAVL4   10000 perm   2 sec   (6253 perm/sec)   p_kst 1.363000e-01   p_cons 4.993000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/ELAVL4.2_1270_10000_0.1363_0.4993_1.png
                gene_name: ELAVL4
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
ELF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.927257e-02	ci left: 4.891517e-01	ci right 5.088489e-01	k: 4990	n:10000
Cons ci ratio: 3.740117e-02	ci left: 5.135553e-01	ci right 5.332311e-01	k: 5234	n:10000
KS ci ratio: 4.747495e-02	ci left: 3.956563e-01	ci right 4.149989e-01	k: 4053	n:10000
ELF2   10000 perm   2 sec   (5944 perm/sec)   p_kst 4.053000e-01   p_cons 5.234000e-01   p_joint 4.990000e-01

Outputting figure to mutsig2_images.part000000000056/ELF2.2_1876_10000_0.4053_0.5234_0.499.png
                gene_name: ELF2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 83 percent done.
ELK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.942206e-02	ci left: 4.872524e-01	ci right 5.069493e-01	k: 4971	n:10000
Cons ci ratio: 2.306014e-02	ci left: 7.342143e-01	ci right 7.514440e-01	k: 7429	n:10000
KS ci ratio: 1.134786e-01	ci left: 1.005192e-01	ci right 1.127110e-01	k: 1065	n:10000
ELK4   10000 perm   2 sec   (6225 perm/sec)   p_kst 1.065000e-01   p_cons 7.429000e-01   p_joint 4.971000e-01

Joint ci ratio: 6.855024e-03	ci left: 9.390812e-01	ci right 9.455895e-01	k: 18848	n:20000
Cons ci ratio: 1.627203e-02	ci left: 7.375891e-01	ci right 7.497399e-01	k: 14874	n:20000
KS ci ratio: 8.190841e-02	ci left: 9.852583e-02	ci right 1.069901e-01	k: 2054	n:20000
ELK4   20000 perm   4 sec   (5414 perm/sec)   p_kst 1.027000e-01   p_cons 7.437000e-01   p_joint 9.424000e-01

Outputting figure to mutsig2_images.part000000000056/ELK4.2_1450_20000_0.1027_0.7437_0.9424.png
                gene_name: ELK4
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 85 percent done.
ELMO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.317267e-02	ci left: 4.420111e-01	ci right 4.616170e-01	k: 4518	n:10000
Cons ci ratio: 3.444763e-02	ci left: 5.544138e-01	ci right 5.739488e-01	k: 5642	n:10000
KS ci ratio: 6.470164e-02	ci left: 2.597333e-01	ci right 2.772017e-01	k: 2684	n:10000
ELMO3   10000 perm   2 sec   (5622 perm/sec)   p_kst 2.684000e-01   p_cons 5.642000e-01   p_joint 4.518000e-01

Outputting figure to mutsig2_images.part000000000056/ELMO3.2_2402_10000_0.2684_0.5642_0.4518.png
                gene_name: ELMO3
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 87 percent done.
ELMOD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.107243e-02	ci left: 1.491353e-01	ci right 1.634655e-01	k: 1562	n:10000
Cons ci ratio: 8.703178e-03	ci left: 9.487722e-01	ci right 9.571614e-01	k: 9531	n:10000
KS ci ratio: 1.034263e-01	ci left: 1.190667e-01	ci right 1.321523e-01	k: 1255	n:10000
ELMOD2   10000 perm   1 sec   (6877 perm/sec)   p_kst 1.255000e-01   p_cons 9.531000e-01   p_joint 1.562000e-01

Joint ci ratio: 3.414375e-02	ci left: 3.904089e-01	ci right 4.040210e-01	k: 7944	n:20000
Cons ci ratio: 6.089305e-03	ci left: 9.510050e-01	ci right 9.568621e-01	k: 19080	n:20000
KS ci ratio: 7.318470e-02	ci left: 1.208400e-01	ci right 1.300692e-01	k: 2508	n:20000
ELMOD2   20000 perm   3 sec   (5924 perm/sec)   p_kst 1.254000e-01   p_cons 9.540000e-01   p_joint 3.972000e-01

Outputting figure to mutsig2_images.part000000000056/ELMOD2.2_914_20000_0.1254_0.954_0.3972.png
                gene_name: ELMOD2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 88 percent done.
ELP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.364781e-02	ci left: 2.661660e-01	ci right 2.837652e-01	k: 2749	n:10000
KS ci ratio: 2.321103e-02	ci left: 7.316880e-01	ci right 7.489718e-01	k: 7404	n:10000
ELP3   10000 perm   2 sec   (6347 perm/sec)   p_kst 7.404000e-01   p_cons 2.749000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/ELP3.2_1704_10000_0.7404_0.2749_1.png
                gene_name: ELP3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
ELP4
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 92 percent done.
EMID1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.733862e-02	ci left: 2.445023e-01	ci right 2.616417e-01	k: 2530	n:10000
Cons ci ratio: 9.735533e-02	ci left: 1.326671e-01	ci right 1.463436e-01	k: 1394	n:10000
KS ci ratio: 6.979389e-02	ci left: 2.313597e-01	ci right 2.481922e-01	k: 2397	n:10000
EMID1   10000 perm   2 sec   (6089 perm/sec)   p_kst 2.397000e-01   p_cons 1.394000e-01   p_joint 2.530000e-01

Outputting figure to mutsig2_images.part000000000056/EMID1.2_1392_10000_0.2397_0.1394_0.253.png
                gene_name: EMID1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 94 percent done.
EML4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.051534e-02	ci left: 7.768156e-01	ci right 7.930181e-01	k: 7850	n:10000
KS ci ratio: 6.958397e-02	ci left: 2.324462e-01	ci right 2.493050e-01	k: 2408	n:10000
EML4   10000 perm   2 sec   (5204 perm/sec)   p_kst 2.408000e-01   p_cons 7.850000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000056/EML4.2_3038_10000_0.2408_0.785_1.png
                gene_name: EML4
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
EMX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.966875e-01	ci left: 3.443296e-02	ci right 4.203907e-02	k: 381	n:10000
Cons ci ratio: 2.971815e-01	ci left: 1.455775e-02	ci right 1.972903e-02	k: 170	n:10000
KS ci ratio: 9.205164e-02	ci left: 1.463885e-01	ci right 1.606140e-01	k: 1534	n:10000
EMX1   10000 perm   2 sec   (6454 perm/sec)   p_kst 1.534000e-01   p_cons 1.700000e-02   p_joint 3.810000e-02

Joint ci ratio: 5.103342e-02	ci left: 2.219527e-01	ci right 2.336266e-01	k: 4555	n:20000
Cons ci ratio: 1.752676e-01	ci left: 2.225822e-02	ci right 2.658156e-02	k: 487	n:20000
KS ci ratio: 6.555871e-02	ci left: 1.466556e-01	ci right 1.566459e-01	k: 3032	n:20000
EMX1   20000 perm   4 sec   (5631 perm/sec)   p_kst 1.516000e-01   p_cons 2.435000e-02   p_joint 2.277500e-01

Joint ci ratio: 3.956199e-02	ci left: 2.416643e-01	ci right 2.514515e-01	k: 7396	n:30000
Cons ci ratio: 1.454663e-01	ci left: 2.191185e-02	ci right 2.538125e-02	k: 708	n:30000
KS ci ratio: 5.343533e-02	ci left: 1.480205e-01	ci right 1.561804e-01	k: 4562	n:30000
EMX1   30000 perm   6 sec   (5308 perm/sec)   p_kst 1.520667e-01   p_cons 2.360000e-02   p_joint 2.465333e-01

Joint ci ratio: 3.753770e-02	ci left: 2.101878e-01	ci right 2.182537e-01	k: 8568	n:40000
Cons ci ratio: 1.268976e-01	ci left: 2.181961e-02	ci right 2.480015e-02	k: 931	n:40000
KS ci ratio: 4.652930e-02	ci left: 1.471822e-01	ci right 1.542185e-01	k: 6027	n:40000
EMX1   40000 perm   8 sec   (5117 perm/sec)   p_kst 1.506750e-01   p_cons 2.327500e-02   p_joint 2.142000e-01

Joint ci ratio: 6.703055e-02	ci left: 6.187004e-02	ci right 6.618074e-02	k: 3200	n:50000
Cons ci ratio: 1.133020e-01	ci left: 2.205379e-02	ci right 2.472194e-02	k: 1168	n:50000
KS ci ratio: 4.162689e-02	ci left: 1.474952e-01	ci right 1.537854e-01	k: 7531	n:50000
EMX1   50000 perm   10 sec   (4957 perm/sec)   p_kst 1.506200e-01   p_cons 2.336000e-02   p_joint 6.400000e-02

Joint ci ratio: 6.329581e-02	ci left: 5.817840e-02	ci right 6.199762e-02	k: 3604	n:60000
Cons ci ratio: 1.035361e-01	ci left: 2.212394e-02	ci right 2.455580e-02	k: 1399	n:60000
KS ci ratio: 3.807295e-02	ci left: 1.472838e-01	ci right 1.530167e-01	k: 9008	n:60000
EMX1   60000 perm   12 sec   (4824 perm/sec)   p_kst 1.501333e-01   p_cons 2.331667e-02   p_joint 6.006667e-02

Joint ci ratio: 6.551330e-02	ci left: 4.706085e-02	ci right 5.026241e-02	k: 3405	n:70000
Cons ci ratio: 9.589599e-02	ci left: 2.219512e-02	ci right 2.444463e-02	k: 1631	n:70000
KS ci ratio: 3.524577e-02	ci left: 1.475182e-01	ci right 1.528251e-01	k: 10511	n:70000
EMX1   70000 perm   15 sec   (4717 perm/sec)   p_kst 1.501571e-01   p_cons 2.330000e-02   p_joint 4.864286e-02

Outputting figure to mutsig2_images.part000000000056/EMX1.2_885_70000_0.15016_0.0233_0.048643.png
                gene_name: EMX1
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 98 percent done.
ENAH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.451312e-02	ci left: 4.269487e-01	ci right 4.464882e-01	k: 4367	n:10000
Cons ci ratio: 1.155520e-01	ci left: 9.720616e-02	ci right 1.092261e-01	k: 1031	n:10000
KS ci ratio: 7.548344e-02	ci left: 2.043197e-01	ci right 2.204482e-01	k: 2123	n:10000
ENAH   10000 perm   2 sec   (5917 perm/sec)   p_kst 2.123000e-01   p_cons 1.031000e-01   p_joint 4.367000e-01

Joint ci ratio: 7.509648e-02	ci left: 1.153793e-01	ci right 1.244316e-01	k: 2397	n:20000
Cons ci ratio: 8.096751e-02	ci left: 1.006368e-01	ci right 1.091784e-01	k: 2097	n:20000
KS ci ratio: 5.376942e-02	ci left: 2.042736e-01	ci right 2.156109e-01	k: 4198	n:20000
ENAH   20000 perm   4 sec   (5157 perm/sec)   p_kst 2.099000e-01   p_cons 1.048500e-01   p_joint 1.198500e-01

Outputting figure to mutsig2_images.part000000000056/ENAH.2_1836_20000_0.2099_0.10485_0.11985.png
                gene_name: ENAH
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000056
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 56 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1648>
Subject: Job 9893926: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1648>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000057> was used as the working directory.
Started at Sat Oct  6 00:06:37 2012
Results reported at Sat Oct  6 01:35:08 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000057.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000057.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 57  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000057.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   5392.59 sec.
    Max Memory :      3549 MB
    Max Swap   :      5921 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
57
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 57
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 57: processing genes 5049 - 5139
Calculating significance of each gene.
Using projection method.
5049	ENC1	4.603854e-01
5050	ENDOD1	5.497278e-01
5051	ENDOG	1
5052	ENDOU	4.196517e-01
5053	ENG	8.809196e-01
5054	ENGASE	1
5055	ENHO	1
5056	ENKUR	6.743033e-02
5057	ENO1	1
5058	ENO2	3.580004e-01
5059	ENO3	2.660450e-01
5060	ENOPH1	5.137866e-01
5061	ENOSF1	5.742788e-01
5062	ENOX1	4.938181e-01
5063	ENOX2	6.475168e-01
5064	ENPEP	5.847270e-02
5065	ENPP1	6.388073e-01
5066	ENPP2	5.239211e-03
5067	ENPP3	7.791324e-01
5068	ENPP4	7.986017e-01
5069	ENPP5	4.876191e-01
5070	ENPP6	7.801166e-01
5071	ENPP7	7.981243e-01
5072	ENSA	6.738072e-01
5073	ENTHD1	7.695536e-01
5074	ENTPD1	6.141551e-01
5075	ENTPD2	1
5076	ENTPD3	2.379559e-01
5077	ENTPD4	2.859234e-01
In gene ENTPD5 the following bins exceed PROBCAP:
    READ-AG-3608	categ 6	N = 1339    n = 1	mu =   1.38e-07
5078	ENTPD5	2.494180e-01
5079	ENTPD6	4.600468e-01
5080	ENTPD7	7.100417e-01
5081	ENTPD8	1
5082	ENY2	8.801240e-02
5083	EOMES	5.024426e-01
5084	EP300	2.611760e-01
5085	EP400	6.938746e-01
5086	EPAS1	3.634806e-01
5087	EPB41	9.035901e-01
5088	EPB41L1	2.131563e-01
5089	EPB41L2	4.254370e-01
5090	EPB41L3	3.388480e-02
5091	EPB41L4A	1.678890e-01
5092	EPB41L4B	4.651679e-01
5093	EPB41L5	2.201371e-01
5094	EPB42	4.079749e-01
5095	EPB49	1
5096	EPC1	9.193361e-01
5097	EPC2	9.531840e-01
5098	EPCAM	5.034132e-01
5099	EPDR1	5.795344e-01
5100	EPGN	1
5101	EPHA1	1.726927e-01
5102	EPHA10	9.052376e-01
5103	EPHA2	6.521053e-01
5104	EPHA3	1.203676e-06
5105	EPHA4	3.050277e-01
5106	EPHA5	9.470423e-05
5107	EPHA6	7.499509e-01
5108	EPHA7	3.318542e-02
5109	EPHA8	5.655009e-01
5110	EPHB1	1.515010e-01
5111	EPHB2	3.837435e-01
5112	EPHB3	9.807616e-01
5113	EPHB4	8.716397e-01
5114	EPHB6	8.438750e-01
5115	EPHX1	7.941571e-02
5116	EPHX2	8.993553e-01
5117	EPHX3	7.108440e-01
5118	EPHX4	3.818066e-01
5119	EPM2A	1
5120	EPM2AIP1	6.218737e-01
5121	EPN1	7.424406e-01
5122	EPN2	2.319705e-01
5123	EPN3	8.903846e-01
5124	EPO	1
5125	EPOR	1
5126	EPPK1	1
5127	EPRS	1.228274e-01
5128	EPS15	3.219109e-01
5129	EPS15L1	9.737789e-01
5130	EPS8	5.501551e-01
5131	EPS8L1	8.793192e-01
5132	EPS8L2	5.500454e-01
5133	EPS8L3	3.811967e-01
5134	EPSTI1	8.432339e-01
5135	EPT1	2.608862e-01
5136	EPX	1.800563e-01
5137	EPYC	1.404569e-02
5138	ERAL1	8.453252e-01
5139	ERAP1	7.938686e-01
Done

Running MutSig 2:
Scatter job 57: processing genes 5049 - 5139
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
EP400
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.237935e-02	ci left: 2.741854e-01	ci right 2.919411e-01	k: 2830	n:10000
Cons ci ratio: 7.609790e-02	ci left: 2.016579e-01	ci right 2.177115e-01	k: 2096	n:10000
KS ci ratio: 4.199803e-02	ci left: 4.556848e-01	ci right 4.753353e-01	k: 4655	n:10000
EP400   10000 perm   3 sec   (3330 perm/sec)   p_kst 4.655000e-01   p_cons 2.096000e-01   p_joint 2.830000e-01

Outputting figure to mutsig2_images.part000000000057/EP400.20_9577_10000_0.4655_0.2096_0.283.png
                gene_name: EP400
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 1 percent done.
EPB41L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.868023e-02	ci left: 4.967503e-01	ci right 5.164458e-01	k: 5066	n:10000
Cons ci ratio: 4.221808e-02	ci left: 4.530892e-01	ci right 4.727324e-01	k: 4629	n:10000
KS ci ratio: 4.114718e-02	ci left: 4.658700e-01	ci right 4.855441e-01	k: 4757	n:10000
EPB41L3   10000 perm   2 sec   (4232 perm/sec)   p_kst 4.757000e-01   p_cons 4.629000e-01   p_joint 5.066000e-01

Outputting figure to mutsig2_images.part000000000057/EPB41L3.18_3348_10000_0.4757_0.4629_0.5066.png
                gene_name: EPB41L3
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 3 percent done.
EPHA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.141976e-02	ci left: 5.991544e-01	ci right 6.183822e-01	k: 6088	n:10000
Cons ci ratio: 7.215091e-02	ci left: 2.196098e-01	ci right 2.361490e-01	k: 2278	n:10000
KS ci ratio: 1.505507e-02	ci left: 8.647828e-01	ci right 8.780001e-01	k: 8715	n:10000
EPHA3   10000 perm   2 sec   (4634 perm/sec)   p_kst 8.715000e-01   p_cons 2.278000e-01   p_joint 6.088000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA3.17_3046_10000_0.8715_0.2278_0.6088.png
                gene_name: EPHA3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 4 percent done.
EPHA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.103741e-01	ci left: 1.057850e-01	ci right 1.182420e-01	k: 1119	n:10000
Cons ci ratio: 1.224866e-01	ci left: 8.718231e-02	ci right 9.865611e-02	k: 928	n:10000
KS ci ratio: 8.469983e-02	ci left: 1.688761e-01	ci right 1.839129e-01	k: 1763	n:10000
EPHA5   10000 perm   2 sec   (4648 perm/sec)   p_kst 1.763000e-01   p_cons 9.280000e-02   p_joint 1.119000e-01

Joint ci ratio: 8.199738e-02	ci left: 9.832948e-02	ci right 1.067865e-01	k: 2050	n:20000
Cons ci ratio: 8.049680e-02	ci left: 1.017171e-01	ci right 1.102979e-01	k: 2119	n:20000
KS ci ratio: 6.015161e-02	ci left: 1.698553e-01	ci right 1.804393e-01	k: 3502	n:20000
EPHA5   20000 perm   5 sec   (4263 perm/sec)   p_kst 1.751000e-01   p_cons 1.059500e-01   p_joint 1.025000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA5.17_3186_20000_0.1751_0.10595_0.1025.png
                gene_name: EPHA5
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.11 

Current progress: 6 percent done.
EP300
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.437385e-02	ci left: 2.617124e-01	ci right 2.792215e-01	k: 2704	n:10000
Cons ci ratio: 1.281149e-01	ci left: 8.009076e-02	ci right 9.115204e-02	k: 855	n:10000
KS ci ratio: 4.392995e-02	ci left: 4.334314e-01	ci right 4.530017e-01	k: 4432	n:10000
EP300   10000 perm   3 sec   (3787 perm/sec)   p_kst 4.432000e-01   p_cons 8.550000e-02   p_joint 2.704000e-01

Joint ci ratio: 5.589978e-02	ci left: 1.918039e-01	ci right 2.028842e-01	k: 3946	n:20000
Cons ci ratio: 9.210118e-02	ci left: 7.921235e-02	ci right 8.690937e-02	k: 1660	n:20000
KS ci ratio: 3.109419e-02	ci left: 4.358498e-01	ci right 4.496669e-01	k: 8855	n:20000
EP300   20000 perm   6 sec   (3506 perm/sec)   p_kst 4.427500e-01   p_cons 8.300000e-02   p_joint 1.973000e-01

Outputting figure to mutsig2_images.part000000000057/EP300.15_7369_20000_0.44275_0.083_0.1973.png
                gene_name: EP300
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 7 percent done.
ENPP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.266726e-02	ci left: 2.171426e-01	ci right 2.336177e-01	k: 2253	n:10000
Cons ci ratio: 4.251639e-02	ci left: 4.495956e-01	ci right 4.692281e-01	k: 4594	n:10000
KS ci ratio: 9.166397e-02	ci left: 1.474675e-01	ci right 1.617343e-01	k: 1545	n:10000
ENPP2   10000 perm   2 sec   (5063 perm/sec)   p_kst 1.545000e-01   p_cons 4.594000e-01   p_joint 2.253000e-01

Outputting figure to mutsig2_images.part000000000057/ENPP2.14_2931_10000_0.1545_0.4594_0.2253.png
                gene_name: ENPP2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 9 percent done.
EPRS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.268605e-02	ci left: 7.404812e-01	ci right 7.575735e-01	k: 7491	n:10000
Cons ci ratio: 4.043641e-02	ci left: 4.745607e-01	ci right 4.942484e-01	k: 4844	n:10000
KS ci ratio: 2.281878e-02	ci left: 7.382572e-01	ci right 7.553988e-01	k: 7469	n:10000
EPRS   10000 perm   2 sec   (4571 perm/sec)   p_kst 7.469000e-01   p_cons 4.844000e-01   p_joint 7.491000e-01

Outputting figure to mutsig2_images.part000000000057/EPRS.12_4667_10000_0.7469_0.4844_0.7491.png
                gene_name: EPRS
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 10 percent done.
EPHA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.490019e-02	ci left: 8.671325e-01	ci right 8.802490e-01	k: 8738	n:10000
KS ci ratio: 1.184452e-02	ci left: 9.108030e-01	ci right 9.217531e-01	k: 9164	n:10000
EPHA7   10000 perm   2 sec   (4544 perm/sec)   p_kst 9.164000e-01   p_cons 8.738000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPHA7.10_3065_10000_0.9164_0.8738_1.png
                gene_name: EPHA7
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
ENPEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.181702e-02	ci left: 7.550454e-01	ci right 7.718009e-01	k: 7635	n:10000
Cons ci ratio: 1.570673e-02	ci left: 8.547786e-01	ci right 8.684100e-01	k: 8617	n:10000
KS ci ratio: 3.334015e-02	ci left: 5.704549e-01	ci right 5.898984e-01	k: 5802	n:10000
ENPEP   10000 perm   2 sec   (4687 perm/sec)   p_kst 5.802000e-01   p_cons 8.617000e-01   p_joint 7.635000e-01

Outputting figure to mutsig2_images.part000000000057/ENPEP.9_2954_10000_0.5802_0.8617_0.7635.png
                gene_name: ENPEP
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 13 percent done.
EPB41L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.792570e-02	ci left: 1.584608e-01	ci right 1.731345e-01	k: 1657	n:10000
Cons ci ratio: 1.313289e-01	ci left: 7.640391e-02	ci right 8.724117e-02	k: 817	n:10000
KS ci ratio: 4.367280e-02	ci left: 4.363242e-01	ci right 4.559072e-01	k: 4461	n:10000
EPB41L1   10000 perm   2 sec   (4900 perm/sec)   p_kst 4.461000e-01   p_cons 8.170000e-02   p_joint 1.657000e-01

Joint ci ratio: 5.480354e-02	ci left: 1.980872e-01	ci right 2.092991e-01	k: 4073	n:20000
Cons ci ratio: 9.186014e-02	ci left: 7.960393e-02	ci right 8.731768e-02	k: 1668	n:20000
KS ci ratio: 3.158086e-02	ci left: 4.282140e-01	ci right 4.420049e-01	k: 8702	n:20000
EPB41L1   20000 perm   5 sec   (4443 perm/sec)   p_kst 4.351000e-01   p_cons 8.340000e-02   p_joint 2.036500e-01

Outputting figure to mutsig2_images.part000000000057/EPB41L1.9_2730_20000_0.4351_0.0834_0.20365.png
                gene_name: EPB41L1
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 15 percent done.
EPB41L4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.904749e-02	ci left: 6.360330e-01	ci right 6.548822e-01	k: 6455	n:10000
Cons ci ratio: 7.564171e-02	ci left: 2.036295e-01	ci right 2.197388e-01	k: 2116	n:10000
KS ci ratio: 1.557477e-02	ci left: 8.568193e-01	ci right 8.703681e-01	k: 8637	n:10000
EPB41L4A   10000 perm   2 sec   (5047 perm/sec)   p_kst 8.637000e-01   p_cons 2.116000e-01   p_joint 6.455000e-01

Outputting figure to mutsig2_images.part000000000057/EPB41L4A.9_2153_10000_0.8637_0.2116_0.6455.png
                gene_name: EPB41L4A
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 16 percent done.
EPHB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.161133e-02	ci left: 9.138916e-01	ci right 9.246627e-01	k: 9194	n:10000
Cons ci ratio: 3.183017e-02	ci left: 5.929300e-01	ci right 6.122102e-01	k: 6026	n:10000
KS ci ratio: 1.964970e-02	ci left: 7.912118e-01	ci right 8.070136e-01	k: 7992	n:10000
EPHB1   10000 perm   2 sec   (5116 perm/sec)   p_kst 7.992000e-01   p_cons 6.026000e-01   p_joint 9.194000e-01

Outputting figure to mutsig2_images.part000000000057/EPHB1.9_3019_10000_0.7992_0.6026_0.9194.png
                gene_name: EPHB1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 18 percent done.
EPHB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.080128e-02	ci left: 9.243065e-01	ci right 9.344416e-01	k: 9295	n:10000
Cons ci ratio: 3.164444e-02	ci left: 5.957408e-01	ci right 6.149978e-01	k: 6054	n:10000
KS ci ratio: 2.458394e-02	ci left: 7.087653e-01	ci right 7.265077e-01	k: 7177	n:10000
EPHB2   10000 perm   2 sec   (4572 perm/sec)   p_kst 7.177000e-01   p_cons 6.054000e-01   p_joint 9.295000e-01

Outputting figure to mutsig2_images.part000000000057/EPHB2.8_3028_10000_0.7177_0.6054_0.9295.png
                gene_name: EPHB2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 19 percent done.
EPHA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.896504e-02	ci left: 6.373404e-01	ci right 6.561741e-01	k: 6468	n:10000
Cons ci ratio: 5.675160e-02	ci left: 3.137382e-01	ci right 3.321651e-01	k: 3229	n:10000
KS ci ratio: 3.215674e-02	ci left: 5.880118e-01	ci right 6.073313e-01	k: 5977	n:10000
EPHA8   10000 perm   2 sec   (4868 perm/sec)   p_kst 5.977000e-01   p_cons 3.229000e-01   p_joint 6.468000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA8.7_3259_10000_0.5977_0.3229_0.6468.png
                gene_name: EPHA8
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 21 percent done.
EPS15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.702516e-02	ci left: 6.685399e-01	ci right 6.869564e-01	k: 6778	n:10000
Cons ci ratio: 3.679107e-02	ci left: 5.217618e-01	ci right 5.414198e-01	k: 5316	n:10000
KS ci ratio: 4.481289e-02	ci left: 4.236581e-01	ci right 4.431807e-01	k: 4334	n:10000
EPS15   10000 perm   2 sec   (4478 perm/sec)   p_kst 4.334000e-01   p_cons 5.316000e-01   p_joint 6.778000e-01

Outputting figure to mutsig2_images.part000000000057/EPS15.7_2889_10000_0.4334_0.5316_0.6778.png
                gene_name: EPS15
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 22 percent done.
EPX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.962374e-03	ci left: 9.459616e-01	ci right 9.545737e-01	k: 9504	n:10000
KS ci ratio: 2.871198e-02	ci left: 6.413636e-01	ci right 6.601485e-01	k: 6508	n:10000
EPX   10000 perm   2 sec   (5544 perm/sec)   p_kst 6.508000e-01   p_cons 9.504000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPX.7_2196_10000_0.6508_0.9504_1.png
                gene_name: EPX
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
EPAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.562896e-02	ci left: 3.224721e-01	ci right 3.410260e-01	k: 3317	n:10000
Cons ci ratio: 3.543166e-02	ci left: 5.404864e-01	ci right 5.600843e-01	k: 5503	n:10000
KS ci ratio: 7.355244e-02	ci left: 2.129985e-01	ci right 2.293642e-01	k: 2211	n:10000
EPAS1   10000 perm   2 sec   (5323 perm/sec)   p_kst 2.211000e-01   p_cons 5.503000e-01   p_joint 3.317000e-01

Outputting figure to mutsig2_images.part000000000057/EPAS1.6_2677_10000_0.2211_0.5503_0.3317.png
                gene_name: EPAS1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 25 percent done.
EPB41L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.470045e-02	ci left: 5.508059e-01	ci right 5.703587e-01	k: 5606	n:10000
Cons ci ratio: 2.618131e-02	ci left: 6.823426e-01	ci right 7.005457e-01	k: 6915	n:10000
KS ci ratio: 5.167123e-02	ci left: 3.557534e-01	ci right 3.747251e-01	k: 3652	n:10000
EPB41L2   10000 perm   2 sec   (5118 perm/sec)   p_kst 3.652000e-01   p_cons 6.915000e-01   p_joint 5.606000e-01

Outputting figure to mutsig2_images.part000000000057/EPB41L2.6_3090_10000_0.3652_0.6915_0.5606.png
                gene_name: EPB41L2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 27 percent done.
EPHA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.566719e-02	ci left: 8.553907e-01	ci right 8.689975e-01	k: 8623	n:10000
Cons ci ratio: 3.437765e-02	ci left: 5.554160e-01	ci right 5.749460e-01	k: 5652	n:10000
KS ci ratio: 3.278220e-02	ci left: 5.786800e-01	ci right 5.980685e-01	k: 5884	n:10000
EPHA1   10000 perm   2 sec   (4977 perm/sec)   p_kst 5.884000e-01   p_cons 5.652000e-01   p_joint 8.623000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA1.6_3003_10000_0.5884_0.5652_0.8623.png
                gene_name: EPHA1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 28 percent done.
EPHA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.564690e-02	ci left: 5.374815e-01	ci right 5.570909e-01	k: 5473	n:10000
Cons ci ratio: 1.316462e-02	ci left: 8.926197e-01	ci right 9.045470e-01	k: 8987	n:10000
KS ci ratio: 5.343254e-02	ci left: 3.404477e-01	ci right 3.592399e-01	k: 3498	n:10000
EPHA4   10000 perm   2 sec   (5344 perm/sec)   p_kst 3.498000e-01   p_cons 8.987000e-01   p_joint 5.473000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA4.6_3029_10000_0.3498_0.8987_0.5473.png
                gene_name: EPHA4
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 30 percent done.
ENTPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.450458e-02	ci left: 2.609207e-01	ci right 2.784136e-01	k: 2696	n:10000
Cons ci ratio: 2.886371e-02	ci left: 6.389496e-01	ci right 6.577639e-01	k: 6484	n:10000
KS ci ratio: 8.265884e-02	ci left: 1.759564e-01	ci right 1.912283e-01	k: 1835	n:10000
ENTPD3   10000 perm   2 sec   (6000 perm/sec)   p_kst 1.835000e-01   p_cons 6.484000e-01   p_joint 2.696000e-01

Outputting figure to mutsig2_images.part000000000057/ENTPD3.5_1630_10000_0.1835_0.6484_0.2696.png
                gene_name: ENTPD3
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 31 percent done.
ENTPD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.460297e-02	ci left: 2.603270e-01	ci right 2.778077e-01	k: 2690	n:10000
Cons ci ratio: 1.568863e-03	ci left: 9.975272e-01	ci right 9.991602e-01	k: 9985	n:10000
KS ci ratio: 1.020373e-01	ci left: 1.219999e-01	ci right 1.352172e-01	k: 1285	n:10000
ENTPD4   10000 perm   2 sec   (5518 perm/sec)   p_kst 1.285000e-01   p_cons 9.985000e-01   p_joint 2.690000e-01

Joint ci ratio: 4.374250e-02	ci left: 2.801907e-01	ci right 2.927714e-01	k: 5729	n:20000
Cons ci ratio: 1.019007e-03	ci left: 9.980958e-01	ci right 9.991506e-01	k: 19974	n:20000
KS ci ratio: 7.093896e-02	ci left: 1.277315e-01	ci right 1.371756e-01	k: 2648	n:20000
ENTPD4   20000 perm   4 sec   (4960 perm/sec)   p_kst 1.324000e-01   p_cons 9.987000e-01   p_joint 2.864500e-01

Outputting figure to mutsig2_images.part000000000057/ENTPD4.5_1899_20000_0.1324_0.9987_0.28645.png
                gene_name: ENTPD4
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 33 percent done.
EPB41L4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.697642e-02	ci left: 4.007361e-01	ci right 4.201161e-01	k: 4104	n:10000
Cons ci ratio: 7.548344e-02	ci left: 2.043197e-01	ci right 2.204482e-01	k: 2123	n:10000
KS ci ratio: 6.372771e-02	ci left: 2.656711e-01	ci right 2.832604e-01	k: 2744	n:10000
EPB41L4B   10000 perm   2 sec   (5538 perm/sec)   p_kst 2.744000e-01   p_cons 2.123000e-01   p_joint 4.104000e-01

Outputting figure to mutsig2_images.part000000000057/EPB41L4B.5_2959_10000_0.2744_0.2123_0.4104.png
                gene_name: EPB41L4B
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 34 percent done.
EPB41L5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.836263e-02	ci left: 3.867942e-01	ci right 4.060662e-01	k: 3964	n:10000
Cons ci ratio: 3.920980e-02	ci left: 4.899514e-01	ci right 5.096487e-01	k: 4998	n:10000
KS ci ratio: 5.814273e-02	ci left: 3.033218e-01	ci right 3.215876e-01	k: 3124	n:10000
EPB41L5   10000 perm   2 sec   (5398 perm/sec)   p_kst 3.124000e-01   p_cons 4.998000e-01   p_joint 3.964000e-01

Outputting figure to mutsig2_images.part000000000057/EPB41L5.5_2483_10000_0.3124_0.4998_0.3964.png
                gene_name: EPB41L5
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 36 percent done.
EPB42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.370816e-02	ci left: 4.359251e-01	ci right 4.555065e-01	k: 4457	n:10000
Cons ci ratio: 4.476731e-02	ci left: 4.241566e-01	ci right 4.436819e-01	k: 4339	n:10000
KS ci ratio: 5.524235e-02	ci left: 3.255497e-01	ci right 3.441466e-01	k: 3348	n:10000
EPB42   10000 perm   2 sec   (5449 perm/sec)   p_kst 3.348000e-01   p_cons 4.339000e-01   p_joint 4.457000e-01

Outputting figure to mutsig2_images.part000000000057/EPB42.5_2218_10000_0.3348_0.4339_0.4457.png
                gene_name: EPB42
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 37 percent done.
EPHA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.748370e-02	ci left: 5.124546e-01	ci right 5.321324e-01	k: 5223	n:10000
Cons ci ratio: 2.835287e-02	ci left: 6.470981e-01	ci right 6.658107e-01	k: 6565	n:10000
KS ci ratio: 6.290595e-02	ci left: 2.708188e-01	ci right 2.885097e-01	k: 2796	n:10000
EPHA2   10000 perm   2 sec   (5161 perm/sec)   p_kst 2.796000e-01   p_cons 6.565000e-01   p_joint 5.223000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA2.5_2999_10000_0.2796_0.6565_0.5223.png
                gene_name: EPHA2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 39 percent done.
EPHA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.787322e-02	ci left: 3.053055e-01	ci right 3.236027e-01	k: 3144	n:10000
Cons ci ratio: 4.273097e-02	ci left: 4.471004e-01	ci right 4.667247e-01	k: 4569	n:10000
KS ci ratio: 6.862726e-02	ci left: 2.374850e-01	ci right 2.544633e-01	k: 2459	n:10000
EPHA6   10000 perm   2 sec   (4765 perm/sec)   p_kst 2.459000e-01   p_cons 4.569000e-01   p_joint 3.144000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA6.5_3582_10000_0.2459_0.4569_0.3144.png
                gene_name: EPHA6
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 40 percent done.
EPHB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.642880e-02	ci left: 3.162190e-01	ci right 3.346828e-01	k: 3254	n:10000
Cons ci ratio: 2.330158e-02	ci left: 7.301724e-01	ci right 7.474883e-01	k: 7389	n:10000
KS ci ratio: 6.939426e-02	ci left: 2.334341e-01	ci right 2.503165e-01	k: 2418	n:10000
EPHB4   10000 perm   2 sec   (5178 perm/sec)   p_kst 2.418000e-01   p_cons 7.389000e-01   p_joint 3.254000e-01

Outputting figure to mutsig2_images.part000000000057/EPHB4.5_3032_10000_0.2418_0.7389_0.3254.png
                gene_name: EPHB4
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 42 percent done.
EPHX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.086321e-02	ci left: 2.259279e-01	ci right 2.426271e-01	k: 2342	n:10000
Cons ci ratio: 3.864157e-02	ci left: 4.972503e-01	ci right 5.169456e-01	k: 5071	n:10000
KS ci ratio: 8.742056e-02	ci left: 1.600322e-01	ci right 1.747621e-01	k: 1673	n:10000
EPHX1   10000 perm   2 sec   (5699 perm/sec)   p_kst 1.673000e-01   p_cons 5.071000e-01   p_joint 2.342000e-01

Outputting figure to mutsig2_images.part000000000057/EPHX1.5_1400_10000_0.1673_0.5071_0.2342.png
                gene_name: EPHX1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 43 percent done.
EPS8
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.444763e-02	ci left: 5.544138e-01	ci right 5.739488e-01	k: 5642	n:10000
Cons ci ratio: 7.080402e-02	ci left: 2.262242e-01	ci right 2.429307e-01	k: 2345	n:10000
KS ci ratio: 1.163479e-02	ci left: 9.135826e-01	ci right 9.243718e-01	k: 9191	n:10000
EPS8   10000 perm   2 sec   (5576 perm/sec)   p_kst 9.191000e-01   p_cons 2.345000e-01   p_joint 5.642000e-01

Outputting figure to mutsig2_images.part000000000057/EPS8.4_2549_10000_0.9191_0.2345_0.5642.png
                gene_name: EPS8
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 45 percent done.
EPYC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.497797e-01	ci left: 5.928045e-02	ci right 6.897537e-02	k: 640	n:10000
Cons ci ratio: 2.211284e-02	ci left: 7.500881e-01	ci right 7.669611e-01	k: 7586	n:10000
KS ci ratio: 2.202549e-01	ci left: 2.731161e-02	ci right 3.416536e-02	k: 306	n:10000
EPYC   10000 perm   2 sec   (5666 perm/sec)   p_kst 3.060000e-02   p_cons 7.586000e-01   p_joint 6.400000e-02

Joint ci ratio: 9.921401e-02	ci left: 6.879694e-02	ci right 7.602796e-02	k: 1447	n:20000
Cons ci ratio: 1.581332e-02	ci left: 7.484232e-01	ci right 7.604028e-01	k: 15089	n:20000
KS ci ratio: 1.578823e-01	ci left: 2.753511e-02	ci right 3.230286e-02	k: 597	n:20000
EPYC   20000 perm   4 sec   (5099 perm/sec)   p_kst 2.985000e-02   p_cons 7.544500e-01   p_joint 7.235000e-02

Joint ci ratio: 9.666480e-02	ci left: 4.944925e-02	ci right 5.450463e-02	k: 1558	n:30000
Cons ci ratio: 1.288890e-02	ci left: 7.501926e-01	ci right 7.599579e-01	k: 22653	n:30000
KS ci ratio: 1.277417e-01	ci left: 2.848615e-02	ci right 3.240548e-02	k: 912	n:30000
EPYC   30000 perm   6 sec   (4894 perm/sec)   p_kst 3.040000e-02   p_cons 7.551000e-01   p_joint 5.193333e-02

Joint ci ratio: 7.490790e-02	ci left: 6.166980e-02	ci right 6.649372e-02	k: 2562	n:40000
Cons ci ratio: 1.114100e-02	ci left: 7.515589e-01	ci right 7.600039e-01	k: 30232	n:40000
KS ci ratio: 1.103633e-01	ci left: 2.888515e-02	ci right 3.228345e-02	k: 1222	n:40000
EPYC   40000 perm   8 sec   (4738 perm/sec)   p_kst 3.055000e-02   p_cons 7.558000e-01   p_joint 6.405000e-02

Joint ci ratio: 6.982252e-02	ci left: 5.722574e-02	ci right 6.138561e-02	k: 2964	n:50000
Cons ci ratio: 9.952403e-03	ci left: 7.524719e-01	ci right 7.600183e-01	k: 37813	n:50000
KS ci ratio: 9.781652e-02	ci left: 2.959573e-02	ci right 3.265902e-02	k: 1555	n:50000
EPYC   50000 perm   11 sec   (4625 perm/sec)   p_kst 3.110000e-02   p_cons 7.562600e-01   p_joint 5.928000e-02

Outputting figure to mutsig2_images.part000000000057/EPYC.5_993_50000_0.0311_0.75626_0.05928.png
                gene_name: EPYC
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.061 

Current progress: 46 percent done.
ENO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.421708e-02	ci left: 5.577214e-01	ci right 5.772393e-01	k: 5675	n:10000
KS ci ratio: 8.761311e-03	ci left: 9.481473e-01	ci right 9.565866e-01	k: 9525	n:10000
ENO3   10000 perm   2 sec   (5676 perm/sec)   p_kst 9.525000e-01   p_cons 5.675000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/ENO3.4_1349_10000_0.9525_0.5675_1.png
                gene_name: ENO3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
ENPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.106854e-02	ci left: 2.828028e-01	ci right 3.007187e-01	k: 2917	n:10000
Cons ci ratio: 1.067577e-01	ci left: 1.124225e-01	ci right 1.252005e-01	k: 1187	n:10000
KS ci ratio: 3.895970e-02	ci left: 4.931507e-01	ci right 5.128476e-01	k: 5030	n:10000
ENPP1   10000 perm   2 sec   (5412 perm/sec)   p_kst 5.030000e-01   p_cons 1.187000e-01   p_joint 2.917000e-01

Joint ci ratio: 4.869129e-02	ci left: 2.387543e-01	ci right 2.507200e-01	k: 4894	n:20000
Cons ci ratio: 7.689281e-02	ci left: 1.105607e-01	ci right 1.194516e-01	k: 2299	n:20000
KS ci ratio: 2.761416e-02	ci left: 4.948957e-01	ci right 5.088038e-01	k: 10037	n:20000
ENPP1   20000 perm   4 sec   (4785 perm/sec)   p_kst 5.018500e-01   p_cons 1.149500e-01   p_joint 2.447000e-01

Outputting figure to mutsig2_images.part000000000057/ENPP1.4_2878_20000_0.50185_0.11495_0.2447.png
                gene_name: ENPP1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 49 percent done.
ENPP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.333011e-02	ci left: 2.681458e-01	ci right 2.857843e-01	k: 2769	n:10000
Cons ci ratio: 7.094230e-02	ci left: 2.255330e-01	ci right 2.422223e-01	k: 2338	n:10000
KS ci ratio: 7.293884e-02	ci left: 2.158598e-01	ci right 2.323013e-01	k: 2240	n:10000
ENPP3   10000 perm   2 sec   (5237 perm/sec)   p_kst 2.240000e-01   p_cons 2.338000e-01   p_joint 2.769000e-01

Outputting figure to mutsig2_images.part000000000057/ENPP3.4_2728_10000_0.224_0.2338_0.2769.png
                gene_name: ENPP3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 51 percent done.
ENTPD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.365594e-02	ci left: 5.658420e-01	ci right 5.853140e-01	k: 5756	n:10000
Cons ci ratio: 3.665096e-02	ci left: 5.236636e-01	ci right 5.433168e-01	k: 5335	n:10000
KS ci ratio: 4.041214e-02	ci left: 4.748604e-01	ci right 4.945485e-01	k: 4847	n:10000
ENTPD7   10000 perm   2 sec   (5630 perm/sec)   p_kst 4.847000e-01   p_cons 5.335000e-01   p_joint 5.756000e-01

Outputting figure to mutsig2_images.part000000000057/ENTPD7.4_1863_10000_0.4847_0.5335_0.5756.png
                gene_name: ENTPD7
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 52 percent done.
EOMES
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.208946e-02	ci left: 2.199059e-01	ci right 2.364527e-01	k: 2281	n:10000
Cons ci ratio: 7.357380e-02	ci left: 2.128999e-01	ci right 2.292629e-01	k: 2210	n:10000
KS ci ratio: 6.665108e-02	ci left: 2.483582e-01	ci right 2.655836e-01	k: 2569	n:10000
EOMES   10000 perm   2 sec   (5357 perm/sec)   p_kst 2.569000e-01   p_cons 2.210000e-01   p_joint 2.281000e-01

Outputting figure to mutsig2_images.part000000000057/EOMES.4_2085_10000_0.2569_0.221_0.2281.png
                gene_name: EOMES
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 54 percent done.
EPHB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.822696e-02	ci left: 1.927894e-01	ci right 2.085854e-01	k: 2006	n:10000
Cons ci ratio: 5.167123e-02	ci left: 3.557534e-01	ci right 3.747251e-01	k: 3652	n:10000
KS ci ratio: 1.061502e-01	ci left: 1.135945e-01	ci right 1.264278e-01	k: 1199	n:10000
EPHB6   10000 perm   2 sec   (5132 perm/sec)   p_kst 1.199000e-01   p_cons 3.652000e-01   p_joint 2.006000e-01

Joint ci ratio: 5.084557e-02	ci left: 2.232408e-01	ci right 2.349380e-01	k: 4581	n:20000
Cons ci ratio: 3.708287e-02	ci left: 3.517501e-01	ci right 3.650910e-01	k: 7168	n:20000
KS ci ratio: 7.704429e-02	ci left: 1.101675e-01	ci right 1.190449e-01	k: 2291	n:20000
EPHB6   20000 perm   4 sec   (4670 perm/sec)   p_kst 1.145500e-01   p_cons 3.584000e-01   p_joint 2.290500e-01

Outputting figure to mutsig2_images.part000000000057/EPHB6.4_3130_20000_0.11455_0.3584_0.22905.png
                gene_name: EPHB6
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 55 percent done.
EPM2AIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.812426e-02	ci left: 8.162904e-01	ci right 8.313205e-01	k: 8239	n:10000
Cons ci ratio: 3.355274e-02	ci left: 5.673461e-01	ci right 5.868090e-01	k: 5771	n:10000
KS ci ratio: 1.522255e-02	ci left: 8.622295e-01	ci right 8.755548e-01	k: 8690	n:10000
EPM2AIP1   10000 perm   2 sec   (5452 perm/sec)   p_kst 8.690000e-01   p_cons 5.771000e-01   p_joint 8.239000e-01

Outputting figure to mutsig2_images.part000000000057/EPM2AIP1.4_1828_10000_0.869_0.5771_0.8239.png
                gene_name: EPM2AIP1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 57 percent done.
EPN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.892472e-02	ci left: 8.031864e-01	ci right 8.186320e-01	k: 8110	n:10000
KS ci ratio: 1.456751e-02	ci left: 8.721407e-01	ci right 8.850379e-01	k: 8787	n:10000
EPN2   10000 perm   2 sec   (5377 perm/sec)   p_kst 8.787000e-01   p_cons 8.110000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPN2.4_1962_10000_0.8787_0.811_1.png
                gene_name: EPN2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
EPS8L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.019906e-02	ci left: 7.820857e-01	ci right 7.981449e-01	k: 7902	n:10000
Cons ci ratio: 6.054087e-02	ci left: 2.863697e-01	ci right 3.043496e-01	k: 2953	n:10000
KS ci ratio: 2.585051e-02	ci left: 6.877856e-01	ci right 7.058996e-01	k: 6969	n:10000
EPS8L3   10000 perm   2 sec   (5637 perm/sec)   p_kst 6.969000e-01   p_cons 2.953000e-01   p_joint 7.902000e-01

Outputting figure to mutsig2_images.part000000000057/EPS8L3.4_1857_10000_0.6969_0.2953_0.7902.png
                gene_name: EPS8L3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 60 percent done.
ERAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.731132e-02	ci left: 5.147561e-01	ci right 5.344296e-01	k: 5246	n:10000
Cons ci ratio: 2.763965e-02	ci left: 6.585713e-01	ci right 6.771308e-01	k: 6679	n:10000
KS ci ratio: 5.389372e-02	ci left: 3.365732e-01	ci right 3.553166e-01	k: 3459	n:10000
ERAP1   10000 perm   2 sec   (5286 perm/sec)   p_kst 3.459000e-01   p_cons 6.679000e-01   p_joint 5.246000e-01

Outputting figure to mutsig2_images.part000000000057/ERAP1.4_2931_10000_0.3459_0.6679_0.5246.png
                gene_name: ERAP1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 61 percent done.
ENC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.439852e-01	ci left: 6.401182e-02	ci right 7.404101e-02	k: 689	n:10000
Cons ci ratio: 3.312167e-02	ci left: 5.736643e-01	ci right 5.930871e-01	k: 5834	n:10000
KS ci ratio: 1.581162e-01	ci left: 5.330545e-02	ci right 6.255418e-02	k: 578	n:10000
ENC1   10000 perm   2 sec   (6418 perm/sec)   p_kst 5.780000e-02   p_cons 5.834000e-01   p_joint 6.890000e-02

Joint ci ratio: 8.965107e-02	ci left: 8.332519e-02	ci right 9.119529e-02	k: 1744	n:20000
Cons ci ratio: 2.338820e-02	ci left: 5.772324e-01	ci right 5.909432e-01	k: 11682	n:20000
KS ci ratio: 1.144539e-01	ci left: 5.222078e-02	ci right 5.860924e-02	k: 1107	n:20000
ENC1   20000 perm   3 sec   (5739 perm/sec)   p_kst 5.535000e-02   p_cons 5.841000e-01   p_joint 8.720000e-02

Joint ci ratio: 8.541492e-02	ci left: 6.279123e-02	ci right 6.842658e-02	k: 1967	n:30000
Cons ci ratio: 1.909807e-02	ci left: 5.784647e-01	ci right 5.896524e-01	k: 17522	n:30000
KS ci ratio: 9.351148e-02	ci left: 5.274009e-02	ci right 5.794645e-02	k: 1659	n:30000
ENC1   30000 perm   6 sec   (5445 perm/sec)   p_kst 5.530000e-02   p_cons 5.840667e-01   p_joint 6.556667e-02

Outputting figure to mutsig2_images.part000000000057/ENC1.3_1774_30000_0.0553_0.58407_0.065567.png
                gene_name: ENC1
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.068 

Current progress: 63 percent done.
ENKUR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.235415e-02	ci left: 4.514920e-01	ci right 4.711305e-01	k: 4613	n:10000
Cons ci ratio: 4.444083e-02	ci left: 4.277464e-01	ci right 4.472900e-01	k: 4375	n:10000
KS ci ratio: 3.854123e-02	ci left: 4.985503e-01	ci right 5.182448e-01	k: 5084	n:10000
ENKUR   10000 perm   2 sec   (6431 perm/sec)   p_kst 5.084000e-01   p_cons 4.375000e-01   p_joint 4.613000e-01

Outputting figure to mutsig2_images.part000000000057/ENKUR.3_795_10000_0.5084_0.4375_0.4613.png
                gene_name: ENKUR
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 64 percent done.
ENO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.306720e-02	ci left: 5.744668e-01	ci right 5.938842e-01	k: 5842	n:10000
Cons ci ratio: 1.022656e-01	ci left: 1.215110e-01	ci right 1.347065e-01	k: 1280	n:10000
KS ci ratio: 3.653334e-02	ci left: 5.252653e-01	ci right 5.449142e-01	k: 5351	n:10000
ENO2   10000 perm   2 sec   (6317 perm/sec)   p_kst 5.351000e-01   p_cons 1.280000e-01   p_joint 5.842000e-01

Joint ci ratio: 2.751768e-02	ci left: 4.966456e-01	ci right 5.105534e-01	k: 10072	n:20000
Cons ci ratio: 7.157880e-02	ci left: 1.257128e-01	ci right 1.350949e-01	k: 2607	n:20000
KS ci ratio: 2.587109e-02	ci left: 5.274573e-01	ci right 5.413327e-01	k: 10688	n:20000
ENO2   20000 perm   4 sec   (5608 perm/sec)   p_kst 5.344000e-01   p_cons 1.303500e-01   p_joint 5.036000e-01

Outputting figure to mutsig2_images.part000000000057/ENO2.3_1349_20000_0.5344_0.13035_0.5036.png
                gene_name: ENO2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 66 percent done.
ENOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.503264e-02	ci left: 5.460965e-01	ci right 5.656709e-01	k: 5559	n:10000
KS ci ratio: 3.251226e-02	ci left: 5.826932e-01	ci right 6.020529e-01	k: 5924	n:10000
ENOX1   10000 perm   2 sec   (5824 perm/sec)   p_kst 5.924000e-01   p_cons 5.559000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/ENOX1.3_1988_10000_0.5924_0.5559_1.png
                gene_name: ENOX1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
ENPP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.820135e-02	ci left: 3.883871e-01	ci right 4.076723e-01	k: 3980	n:10000
Cons ci ratio: 1.561441e-02	ci left: 8.562070e-01	ci right 8.697808e-01	k: 8631	n:10000
KS ci ratio: 7.260489e-02	ci left: 2.174386e-01	ci right 2.339215e-01	k: 2256	n:10000
ENPP5   10000 perm   2 sec   (5978 perm/sec)   p_kst 2.256000e-01   p_cons 8.631000e-01   p_joint 3.980000e-01

Outputting figure to mutsig2_images.part000000000057/ENPP5.3_1446_10000_0.2256_0.8631_0.398.png
                gene_name: ENPP5
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 69 percent done.
ENTHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.032345e-02	ci left: 2.878562e-01	ci right 3.058623e-01	k: 2968	n:10000
Cons ci ratio: 2.124885e-02	ci left: 7.645598e-01	ci right 7.810810e-01	k: 7729	n:10000
KS ci ratio: 1.087408e-01	ci left: 1.087125e-01	ci right 1.213128e-01	k: 1149	n:10000
ENTHD1   10000 perm   2 sec   (6161 perm/sec)   p_kst 1.149000e-01   p_cons 7.729000e-01   p_joint 2.968000e-01

Joint ci ratio: 5.291709e-02	ci left: 2.095707e-01	ci right 2.210122e-01	k: 4305	n:20000
Cons ci ratio: 1.496310e-02	ci left: 7.684921e-01	ci right 7.801280e-01	k: 15487	n:20000
KS ci ratio: 7.736872e-02	ci left: 1.093319e-01	ci right 1.181808e-01	k: 2274	n:20000
ENTHD1   20000 perm   4 sec   (5483 perm/sec)   p_kst 1.137000e-01   p_cons 7.743500e-01   p_joint 2.152500e-01

Outputting figure to mutsig2_images.part000000000057/ENTHD1.3_1848_20000_0.1137_0.77435_0.21525.png
                gene_name: ENTHD1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 70 percent done.
EPB41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.445662e-02	ci left: 7.108847e-01	ci right 7.285871e-01	k: 7198	n:10000
KS ci ratio: 9.795407e-03	ci left: 9.365128e-01	ci right 9.458281e-01	k: 9413	n:10000
EPB41   10000 perm   2 sec   (5710 perm/sec)   p_kst 9.413000e-01   p_cons 7.198000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPB41.3_2692_10000_0.9413_0.7198_1.png
                gene_name: EPB41
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
EPHA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.963379e-02	ci left: 6.267827e-01	ci right 6.457378e-01	k: 6363	n:10000
Cons ci ratio: 3.082280e-02	ci left: 6.082933e-01	ci right 6.274380e-01	k: 6179	n:10000
KS ci ratio: 6.328272e-02	ci left: 2.684428e-01	ci right 2.860871e-01	k: 2772	n:10000
EPHA10   10000 perm   2 sec   (5708 perm/sec)   p_kst 2.772000e-01   p_cons 6.179000e-01   p_joint 6.363000e-01

Outputting figure to mutsig2_images.part000000000057/EPHA10.3_3133_10000_0.2772_0.6179_0.6363.png
                gene_name: EPHA10
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 73 percent done.
EPHX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.860597e-02	ci left: 2.999501e-01	ci right 3.181613e-01	k: 3090	n:10000
Cons ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
KS ci ratio: 3.290415e-02	ci left: 5.768742e-01	ci right 5.962753e-01	k: 5866	n:10000
EPHX4   10000 perm   2 sec   (6258 perm/sec)   p_kst 5.866000e-01   p_cons 4.100000e-02   p_joint 3.090000e-01

Joint ci ratio: 5.536728e-02	ci left: 1.948216e-01	ci right 2.059656e-01	k: 4007	n:20000
Cons ci ratio: 1.357013e-01	ci left: 3.732625e-02	ci right 4.280850e-02	k: 800	n:20000
KS ci ratio: 2.336896e-02	ci left: 5.776333e-01	ci right 5.913421e-01	k: 11690	n:20000
EPHX4   20000 perm   4 sec   (5555 perm/sec)   p_kst 5.845000e-01   p_cons 4.000000e-02   p_joint 2.003500e-01

Joint ci ratio: 3.135068e-02	ci left: 3.371953e-01	ci right 3.479685e-01	k: 10277	n:30000
Cons ci ratio: 1.103944e-01	ci left: 3.810255e-02	ci right 4.258702e-02	k: 1209	n:30000
KS ci ratio: 1.903394e-02	ci left: 5.801011e-01	ci right 5.912823e-01	k: 17571	n:30000
EPHX4   30000 perm   6 sec   (5348 perm/sec)   p_kst 5.857000e-01   p_cons 4.030000e-02   p_joint 3.425667e-01

Joint ci ratio: 3.445805e-02	ci left: 2.402197e-01	ci right 2.486674e-01	k: 9777	n:40000
Cons ci ratio: 9.706636e-02	ci left: 3.727033e-02	ci right 4.109694e-02	k: 1566	n:40000
KS ci ratio: 1.652312e-02	ci left: 5.797022e-01	ci right 5.893856e-01	k: 23382	n:40000
EPHX4   40000 perm   8 sec   (5195 perm/sec)   p_kst 5.845500e-01   p_cons 3.915000e-02   p_joint 2.444250e-01

Outputting figure to mutsig2_images.part000000000057/EPHX4.3_1117_40000_0.58455_0.03915_0.24443.png
                gene_name: EPHX4
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 75 percent done.
EPS15L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.047793e-02	ci left: 6.136175e-01	ci right 6.327106e-01	k: 6232	n:10000
Cons ci ratio: 3.236439e-02	ci left: 5.849008e-01	ci right 6.042441e-01	k: 5946	n:10000
KS ci ratio: 5.645451e-02	ci left: 3.160206e-01	ci right 3.344813e-01	k: 3252	n:10000
EPS15L1   10000 perm   2 sec   (5567 perm/sec)   p_kst 3.252000e-01   p_cons 5.946000e-01   p_joint 6.232000e-01

Outputting figure to mutsig2_images.part000000000057/EPS15L1.3_2687_10000_0.3252_0.5946_0.6232.png
                gene_name: EPS15L1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 76 percent done.
EPT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.836201e-03	ci left: 9.825290e-01	ci right 9.873825e-01	k: 9851	n:10000
Cons ci ratio: 5.169162e-03	ci left: 9.802710e-01	ci right 9.854422e-01	k: 9830	n:10000
KS ci ratio: 1.863415e-02	ci left: 8.079591e-01	ci right 8.232566e-01	k: 8157	n:10000
EPT1   10000 perm   2 sec   (6195 perm/sec)   p_kst 8.157000e-01   p_cons 9.830000e-01   p_joint 9.851000e-01

Outputting figure to mutsig2_images.part000000000057/EPT1.3_1234_10000_0.8157_0.983_0.9851.png
                gene_name: EPT1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 78 percent done.
ENDOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.925716e-02	ci left: 2.952901e-01	ci right 3.134240e-01	k: 3043	n:10000
Cons ci ratio: 4.515205e-02	ci left: 4.199692e-01	ci right 4.394718e-01	k: 4297	n:10000
KS ci ratio: 1.907924e-01	ci left: 3.662531e-02	ci right 4.444524e-02	k: 404	n:10000
ENDOD1   10000 perm   2 sec   (5694 perm/sec)   p_kst 4.040000e-02   p_cons 4.297000e-01   p_joint 3.043000e-01

Joint ci ratio: 3.224154e-02	ci left: 4.180853e-01	ci right 4.318365e-01	k: 8499	n:20000
Cons ci ratio: 3.228445e-02	ci left: 4.174368e-01	ci right 4.311852e-01	k: 8486	n:20000
KS ci ratio: 1.357897e-01	ci left: 3.727788e-02	ci right 4.275688e-02	k: 799	n:20000
ENDOD1   20000 perm   4 sec   (5394 perm/sec)   p_kst 3.995000e-02   p_cons 4.243000e-01   p_joint 4.249500e-01

Joint ci ratio: 8.089357e-03	ci left: 8.830930e-01	ci right 8.902986e-01	k: 26602	n:30000
Cons ci ratio: 2.639334e-02	ci left: 4.180993e-01	ci right 4.293155e-01	k: 12711	n:30000
KS ci ratio: 1.116012e-01	ci left: 3.729147e-02	ci right 4.173161e-02	k: 1184	n:30000
ENDOD1   30000 perm   6 sec   (5221 perm/sec)   p_kst 3.946667e-02   p_cons 4.237000e-01   p_joint 8.867333e-01

Joint ci ratio: 9.600623e-03	ci left: 8.025940e-01	ci right 8.103615e-01	k: 32260	n:40000
Cons ci ratio: 2.280507e-02	ci left: 4.199739e-01	ci right 4.296870e-01	k: 16993	n:40000
KS ci ratio: 9.592526e-02	ci left: 3.814944e-02	ci right 4.201769e-02	k: 1602	n:40000
ENDOD1   40000 perm   8 sec   (5093 perm/sec)   p_kst 4.005000e-02   p_cons 4.248250e-01   p_joint 8.065000e-01

Outputting figure to mutsig2_images.part000000000057/ENDOD1.2_1511_40000_0.04005_0.42483_0.8065.png
                gene_name: ENDOD1
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 79 percent done.
ENDOU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.827749e-02	ci left: 6.483055e-01	ci right 6.670026e-01	k: 6577	n:10000
Cons ci ratio: 8.981570e-02	ci left: 1.527663e-01	ci right 1.672324e-01	k: 1599	n:10000
KS ci ratio: 2.887686e-03	ci left: 9.930731e-01	ci right 9.960275e-01	k: 9947	n:10000
ENDOU   10000 perm   1 sec   (6747 perm/sec)   p_kst 9.947000e-01   p_cons 1.599000e-01   p_joint 6.577000e-01

Outputting figure to mutsig2_images.part000000000057/ENDOU.2_1273_10000_0.9947_0.1599_0.6577.png
                gene_name: ENDOU
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 1.00 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 81 percent done.
ENG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
Cons ci ratio: 1.165822e-02	ci left: 9.132737e-01	ci right 9.240809e-01	k: 9188	n:10000
KS ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
ENG   10000 perm   2 sec   (6138 perm/sec)   p_kst 4.000000e-04   p_cons 9.188000e-01   p_joint 1.600000e-03

Joint ci ratio: 7.402732e-01	ci left: 8.898411e-04	ci right 1.963576e-03	k: 27	n:20000
Cons ci ratio: 8.373694e-03	ci left: 9.124782e-01	ci right 9.202003e-01	k: 18328	n:20000
KS ci ratio: 1.181570e+00	ci left: 2.397946e-04	ci right 9.193249e-04	k: 10	n:20000
ENG   20000 perm   4 sec   (5456 perm/sec)   p_kst 5.000000e-04   p_cons 9.164000e-01   p_joint 1.350000e-03

Joint ci ratio: 5.973559e-01	ci left: 1.009177e-03	ci right 1.891927e-03	k: 42	n:30000
Cons ci ratio: 6.876709e-03	ci left: 9.122956e-01	ci right 9.186237e-01	k: 27465	n:30000
KS ci ratio: 1.011870e+00	ci left: 2.551537e-04	ci right 7.828635e-04	k: 14	n:30000
ENG   30000 perm   6 sec   (5188 perm/sec)   p_kst 4.666667e-04   p_cons 9.155000e-01   p_joint 1.400000e-03

Joint ci ratio: 6.623027e-01	ci left: 5.887193e-04	ci right 1.187589e-03	k: 34	n:40000
Cons ci ratio: 5.994569e-03	ci left: 9.116917e-01	ci right 9.171980e-01	k: 36579	n:40000
KS ci ratio: 9.237334e-01	ci left: 2.475970e-04	ci right 6.803793e-04	k: 17	n:40000
ENG   40000 perm   8 sec   (5018 perm/sec)   p_kst 4.250000e-04   p_cons 9.144750e-01   p_joint 8.500000e-04

Joint ci ratio: 6.119440e-01	ci left: 5.715913e-04	ci right 1.089215e-03	k: 40	n:50000
Cons ci ratio: 5.337407e-03	ci left: 9.127037e-01	ci right 9.176080e-01	k: 45759	n:50000
KS ci ratio: 8.355546e-01	ci left: 2.600048e-04	ci right 6.419433e-04	k: 21	n:50000
ENG   50000 perm   11 sec   (4695 perm/sec)   p_kst 4.200000e-04   p_cons 9.151800e-01   p_joint 8.000000e-04

Joint ci ratio: 5.331999e-01	ci left: 6.617451e-04	ci right 1.155265e-03	k: 53	n:60000
Cons ci ratio: 4.858063e-03	ci left: 9.133809e-01	ci right 9.178454e-01	k: 54938	n:60000
KS ci ratio: 7.277437e-01	ci left: 3.101183e-04	ci right 6.743932e-04	k: 28	n:60000
ENG   60000 perm   13 sec   (4476 perm/sec)   p_kst 4.666667e-04   p_cons 9.156333e-01   p_joint 8.833333e-04

Joint ci ratio: 4.976164e-01	ci left: 6.666373e-04	ci right 1.119248e-03	k: 61	n:70000
Cons ci ratio: 4.502778e-03	ci left: 9.133718e-01	ci right 9.175079e-01	k: 64082	n:70000
KS ci ratio: 6.822187e-01	ci left: 3.127057e-04	ci right 6.452886e-04	k: 32	n:70000
ENG   70000 perm   16 sec   (4446 perm/sec)   p_kst 4.571429e-04   p_cons 9.154571e-01   p_joint 8.714286e-04

Joint ci ratio: 4.650090e-01	ci left: 6.821670e-04	ci right 1.105382e-03	k: 70	n:80000
Cons ci ratio: 4.210087e-03	ci left: 9.135766e-01	ci right 9.174432e-01	k: 73242	n:80000
KS ci ratio: 6.275454e-01	ci left: 3.361595e-04	ci right 6.519169e-04	k: 38	n:80000
ENG   80000 perm   18 sec   (4406 perm/sec)   p_kst 4.750000e-04   p_cons 9.155250e-01   p_joint 8.750000e-04

Joint ci ratio: 4.408384e-01	ci left: 6.851225e-04	ci right 1.081523e-03	k: 78	n:90000
Cons ci ratio: 3.965366e-03	ci left: 9.138434e-01	ci right 9.174853e-01	k: 82411	n:90000
KS ci ratio: 5.976483e-01	ci left: 3.363523e-04	ci right 6.307460e-04	k: 42	n:90000
ENG   90000 perm   21 sec   (4282 perm/sec)   p_kst 4.666667e-04   p_cons 9.156778e-01   p_joint 8.666667e-04

Joint ci ratio: 3.264298e-01	ci left: 1.205362e-03	ci right 1.684305e-03	k: 143	n:100000
Cons ci ratio: 3.765702e-03	ci left: 9.137792e-01	ci right 9.172366e-01	k: 91552	n:100000
KS ci ratio: 5.656646e-01	ci left: 3.453581e-04	ci right 6.249519e-04	k: 47	n:100000
ENG   100000 perm   24 sec   (4195 perm/sec)   p_kst 4.700000e-04   p_cons 9.155200e-01   p_joint 1.430000e-03

Joint ci ratio: 4.063114e-01	ci left: 6.742787e-04	ci right 1.025629e-03	k: 92	n:110000
Cons ci ratio: 3.598076e-03	ci left: 9.135290e-01	ci right 9.168309e-01	k: 100671	n:110000
KS ci ratio: 5.434752e-01	ci left: 3.452266e-04	ci right 6.095517e-04	k: 51	n:110000
ENG   110000 perm   27 sec   (4133 perm/sec)   p_kst 4.636364e-04   p_cons 9.151909e-01   p_joint 8.363636e-04

Joint ci ratio: 3.918350e-01	ci left: 6.705683e-04	ci right 1.004318e-03	k: 99	n:120000
Cons ci ratio: 3.459272e-03	ci left: 9.129457e-01	ci right 9.161175e-01	k: 109745	n:120000
KS ci ratio: 5.333222e-01	ci left: 3.308556e-04	ci right 5.776716e-04	k: 53	n:120000
ENG   120000 perm   30 sec   (4042 perm/sec)   p_kst 4.416667e-04   p_cons 9.145417e-01   p_joint 8.250000e-04

Joint ci ratio: 3.788033e-01	ci left: 6.676169e-04	ci right 9.861000e-04	k: 106	n:130000
Cons ci ratio: 3.327054e-03	ci left: 9.128428e-01	ci right 9.158925e-01	k: 118869	n:130000
KS ci ratio: 5.191008e-01	ci left: 3.254143e-04	ci right 5.593537e-04	k: 56	n:130000
ENG   130000 perm   33 sec   (3995 perm/sec)   p_kst 4.307692e-04   p_cons 9.143769e-01   p_joint 8.153846e-04

Joint ci ratio: 3.719211e-01	ci left: 6.458045e-04	ci right 9.469218e-04	k: 110	n:140000
Cons ci ratio: 3.205258e-03	ci left: 9.129367e-01	ci right 9.158747e-01	k: 128018	n:140000
KS ci ratio: 5.102312e-01	ci left: 3.145991e-04	ci right 5.355279e-04	k: 58	n:140000
ENG   140000 perm   35 sec   (3948 perm/sec)   p_kst 4.142857e-04   p_cons 9.144143e-01   p_joint 7.857143e-04

Joint ci ratio: 3.013675e-01	ci left: 9.571146e-04	ci right 1.302635e-03	k: 168	n:150000
Cons ci ratio: 3.100278e-03	ci left: 9.127982e-01	ci right 9.156391e-01	k: 137134	n:150000
KS ci ratio: 4.824109e-01	ci left: 3.344529e-04	ci right 5.522860e-04	k: 65	n:150000
ENG   150000 perm   38 sec   (3900 perm/sec)   p_kst 4.333333e-04   p_cons 9.142267e-01   p_joint 1.120000e-03

Joint ci ratio: 3.397647e-01	ci left: 6.903150e-04	ci right 9.782697e-04	k: 132	n:160000
Cons ci ratio: 3.002217e-03	ci left: 9.128233e-01	ci right 9.155741e-01	k: 146273	n:160000
KS ci ratio: 4.651137e-01	ci left: 3.410681e-04	ci right 5.527231e-04	k: 70	n:160000
ENG   160000 perm   42 sec   (3849 perm/sec)   p_kst 4.375000e-04   p_cons 9.142062e-01   p_joint 8.250000e-04

Joint ci ratio: 2.533847e-01	ci left: 1.227874e-03	ci right 1.589473e-03	k: 238	n:170000
Cons ci ratio: 2.913564e-03	ci left: 9.128113e-01	ci right 9.154805e-01	k: 155406	n:170000
KS ci ratio: 4.466230e-01	ci left: 3.522472e-04	ci right 5.595293e-04	k: 76	n:170000
ENG   170000 perm   45 sec   (3798 perm/sec)   p_kst 4.470588e-04   p_cons 9.141529e-01   p_joint 1.400000e-03

Joint ci ratio: 3.372524e-01	ci left: 6.237762e-04	ci right 8.816317e-04	k: 134	n:180000
Cons ci ratio: 2.673736e-03	ci left: 9.214902e-01	ci right 9.239628e-01	k: 166092	n:180000
KS ci ratio: 4.381707e-01	ci left: 3.474874e-04	ci right 5.469569e-04	k: 79	n:180000
ENG   180000 perm   48 sec   (3739 perm/sec)   p_kst 4.388889e-04   p_cons 9.227333e-01   p_joint 7.444444e-04

Joint ci ratio: 3.300002e-01	ci left: 6.198797e-04	ci right 8.694449e-04	k: 140	n:190000
Cons ci ratio: 2.600915e-03	ci left: 9.216067e-01	ci right 9.240120e-01	k: 175335	n:190000
KS ci ratio: 4.250875e-01	ci left: 3.526553e-04	ci right 5.473276e-04	k: 84	n:190000
ENG   190000 perm   52 sec   (3685 perm/sec)   p_kst 4.421053e-04   p_cons 9.228158e-01   p_joint 7.368421e-04

Joint ci ratio: 3.188838e-01	ci left: 6.348158e-04	ci right 8.800286e-04	k: 150	n:200000
Cons ci ratio: 2.536582e-03	ci left: 9.215511e-01	ci right 9.238966e-01	k: 184546	n:200000
KS ci ratio: 4.085932e-01	ci left: 3.663529e-04	ci right 5.586102e-04	k: 91	n:200000
ENG   200000 perm   55 sec   (3633 perm/sec)   p_kst 4.550000e-04   p_cons 9.227300e-01   p_joint 7.500000e-04

Joint ci ratio: 3.117404e-01	ci left: 6.352825e-04	ci right 8.740848e-04	k: 157	n:210000
Cons ci ratio: 2.477456e-03	ci left: 9.214632e-01	ci right 9.237537e-01	k: 193749	n:210000
KS ci ratio: 4.020916e-01	ci left: 3.617364e-04	ci right 5.477449e-04	k: 94	n:210000
ENG   210000 perm   59 sec   (3583 perm/sec)   p_kst 4.476190e-04   p_cons 9.226143e-01   p_joint 7.476190e-04

Joint ci ratio: 3.088255e-01	ci left: 6.189799e-04	ci right 8.490499e-04	k: 160	n:220000
Cons ci ratio: 2.560162e-03	ci left: 9.130357e-01	ci right 9.153807e-01	k: 201127	n:220000
KS ci ratio: 3.979270e-01	ci left: 3.534698e-04	ci right 5.328490e-04	k: 96	n:220000
ENG   220000 perm   62 sec   (3533 perm/sec)   p_kst 4.363636e-04   p_cons 9.142136e-01   p_joint 7.272727e-04

Joint ci ratio: 2.987848e-01	ci left: 6.362503e-04	ci right 8.635931e-04	k: 171	n:230000
Cons ci ratio: 2.500007e-03	ci left: 9.133061e-01	ci right 9.155965e-01	k: 210325	n:230000
KS ci ratio: 3.880509e-01	ci left: 3.576927e-04	ci right 5.335581e-04	k: 101	n:230000
ENG   230000 perm   66 sec   (3485 perm/sec)   p_kst 4.391304e-04   p_cons 9.144565e-01   p_joint 7.434783e-04

Joint ci ratio: 2.513403e-01	ci left: 8.853361e-04	ci right 1.143625e-03	k: 242	n:240000
Cons ci ratio: 2.445579e-03	ci left: 9.134454e-01	ci right 9.156862e-01	k: 219497	n:240000
KS ci ratio: 3.771165e-01	ci left: 3.653851e-04	ci right 5.387189e-04	k: 107	n:240000
ENG   240000 perm   70 sec   (3439 perm/sec)   p_kst 4.458333e-04   p_cons 9.145708e-01   p_joint 1.008333e-03

Joint ci ratio: 2.169667e-01	ci left: 1.162569e-03	ci right 1.449194e-03	k: 325	n:250000
Cons ci ratio: 2.392529e-03	ci left: 9.137069e-01	ci right 9.158995e-01	k: 228702	n:250000
KS ci ratio: 3.654571e-01	ci left: 3.761580e-04	ci right 5.477701e-04	k: 114	n:250000
ENG   250000 perm   74 sec   (3398 perm/sec)   p_kst 4.560000e-04   p_cons 9.148080e-01   p_joint 1.300000e-03

Joint ci ratio: 2.105998e-01	ci left: 1.190662e-03	ci right 1.474488e-03	k: 345	n:260000
Cons ci ratio: 2.344160e-03	ci left: 9.138557e-01	ci right 9.160043e-01	k: 237883	n:260000
KS ci ratio: 3.562800e-01	ci left: 3.826756e-04	ci right 5.518619e-04	k: 120	n:260000
ENG   260000 perm   77 sec   (3356 perm/sec)   p_kst 4.615385e-04   p_cons 9.149346e-01   p_joint 1.326923e-03

Joint ci ratio: 2.250713e-01	ci left: 9.959714e-04	ci right 1.251968e-03	k: 302	n:270000
Cons ci ratio: 2.298989e-03	ci left: 9.139678e-01	ci right 9.160751e-01	k: 247057	n:270000
KS ci ratio: 3.519449e-01	ci left: 3.786251e-04	ci right 5.435184e-04	k: 123	n:270000
ENG   270000 perm   81 sec   (3316 perm/sec)   p_kst 4.555556e-04   p_cons 9.150259e-01   p_joint 1.118519e-03

Joint ci ratio: 2.225174e-01	ci left: 9.839989e-04	ci right 1.233655e-03	k: 309	n:280000
Cons ci ratio: 2.259130e-03	ci left: 9.138783e-01	ci right 9.159488e-01	k: 256177	n:280000
KS ci ratio: 3.477642e-01	ci left: 3.748754e-04	ci right 5.357593e-04	k: 126	n:280000
ENG   280000 perm   85 sec   (3277 perm/sec)   p_kst 4.500000e-04   p_cons 9.149179e-01   p_joint 1.103571e-03

Joint ci ratio: 2.193567e-01	ci left: 9.793847e-04	ci right 1.223865e-03	k: 318	n:290000
Cons ci ratio: 2.219009e-03	ci left: 9.139548e-01	ci right 9.159886e-01	k: 265343	n:290000
KS ci ratio: 3.437291e-01	ci left: 3.713952e-04	ci right 5.285248e-04	k: 129	n:290000
ENG   290000 perm   90 sec   (3238 perm/sec)   p_kst 4.448276e-04   p_cons 9.149759e-01   p_joint 1.096552e-03

Joint ci ratio: 2.176598e-01	ci left: 9.624922e-04	ci right 1.200648e-03	k: 323	n:300000
Cons ci ratio: 2.182962e-03	ci left: 9.138824e-01	ci right 9.158829e-01	k: 274466	n:300000
KS ci ratio: 3.411166e-01	ci left: 3.651085e-04	ci right 5.181454e-04	k: 131	n:300000
ENG   300000 perm   94 sec   (3192 perm/sec)   p_kst 4.366667e-04   p_cons 9.148867e-01   p_joint 1.076667e-03

Joint ci ratio: 2.140564e-01	ci left: 9.650098e-04	ci right 1.199316e-03	k: 334	n:310000
Cons ci ratio: 2.145856e-03	ci left: 9.140160e-01	ci right 9.159827e-01	k: 283651	n:310000
KS ci ratio: 3.373059e-01	ci left: 3.621839e-04	ci right 5.119299e-04	k: 134	n:310000
ENG   310000 perm   98 sec   (3156 perm/sec)   p_kst 4.322581e-04   p_cons 9.150032e-01   p_joint 1.077419e-03

Joint ci ratio: 2.121664e-01	ci left: 9.526019e-04	ci right 1.181588e-03	k: 340	n:320000
Cons ci ratio: 2.110576e-03	ci left: 9.141415e-01	ci right 9.160760e-01	k: 292836	n:320000
KS ci ratio: 3.360653e-01	ci left: 3.537262e-04	ci right 4.993208e-04	k: 135	n:320000
ENG   320000 perm   103 sec   (3119 perm/sec)   p_kst 4.218750e-04   p_cons 9.151125e-01   p_joint 1.062500e-03

Joint ci ratio: 1.916117e-01	ci left: 1.145314e-03	ci right 1.390851e-03	k: 417	n:330000
Cons ci ratio: 2.080301e-03	ci left: 9.140098e-01	ci right 9.159162e-01	k: 301939	n:330000
KS ci ratio: 3.288878e-01	ci left: 3.596718e-04	ci right 5.038835e-04	k: 141	n:330000
ENG   330000 perm   107 sec   (3084 perm/sec)   p_kst 4.272727e-04   p_cons 9.149667e-01   p_joint 1.263636e-03

Joint ci ratio: 2.064924e-01	ci left: 9.495198e-04	ci right 1.170890e-03	k: 359	n:340000
Cons ci ratio: 2.049892e-03	ci left: 9.139926e-01	ci right 9.158710e-01	k: 311078	n:340000
KS ci ratio: 3.254684e-01	ci left: 3.571920e-04	ci right 4.986093e-04	k: 144	n:340000
ENG   340000 perm   112 sec   (3049 perm/sec)   p_kst 4.235294e-04   p_cons 9.149353e-01   p_joint 1.055882e-03

Joint ci ratio: 1.852909e-01	ci left: 1.158817e-03	ci right 1.398134e-03	k: 446	n:350000
Cons ci ratio: 2.021150e-03	ci left: 9.139478e-01	ci right 9.157997e-01	k: 320207	n:350000
KS ci ratio: 3.168435e-01	ci left: 3.680019e-04	ci right 5.090559e-04	k: 152	n:350000
ENG   350000 perm   116 sec   (3016 perm/sec)   p_kst 4.342857e-04   p_cons 9.148771e-01   p_joint 1.274286e-03

Joint ci ratio: 1.830528e-01	ci left: 1.155775e-03	ci right 1.391260e-03	k: 457	n:360000
Cons ci ratio: 1.993405e-03	ci left: 9.139196e-01	ci right 9.157460e-01	k: 329341	n:360000
KS ci ratio: 3.127814e-01	ci left: 3.680130e-04	ci right 5.069016e-04	k: 156	n:360000
ENG   360000 perm   121 sec   (2977 perm/sec)   p_kst 4.333333e-04   p_cons 9.148361e-01   p_joint 1.269444e-03

Joint ci ratio: 1.822608e-01	ci left: 1.134853e-03	ci right 1.364964e-03	k: 461	n:370000
Cons ci ratio: 1.964350e-03	ci left: 9.140859e-01	ci right 9.158859e-01	k: 338546	n:370000
KS ci ratio: 3.060323e-01	ci left: 3.755172e-04	ci right 5.135842e-04	k: 163	n:370000
ENG   370000 perm   126 sec   (2940 perm/sec)   p_kst 4.405405e-04   p_cons 9.149892e-01   p_joint 1.245946e-03

Joint ci ratio: 1.920883e-01	ci left: 9.895966e-04	ci right 1.202339e-03	k: 415	n:380000
Cons ci ratio: 1.937769e-03	ci left: 9.141432e-01	ci right 9.159189e-01	k: 347713	n:380000
KS ci ratio: 2.971060e-01	ci left: 3.899609e-04	ci right 5.283687e-04	k: 173	n:380000
ENG   380000 perm   131 sec   (2908 perm/sec)   p_kst 4.552632e-04   p_cons 9.150342e-01   p_joint 1.092105e-03

Joint ci ratio: 1.900441e-01	ci left: 9.861953e-04	ci right 1.195690e-03	k: 424	n:390000
Cons ci ratio: 1.912428e-03	ci left: 9.141822e-01	ci right 9.159347e-01	k: 356874	n:390000
KS ci ratio: 2.954141e-01	ci left: 3.847089e-04	ci right 5.203293e-04	k: 175	n:390000
ENG   390000 perm   137 sec   (2855 perm/sec)   p_kst 4.487179e-04   p_cons 9.150615e-01   p_joint 1.087179e-03

Joint ci ratio: 2.236401e-01	ci left: 6.817060e-04	ci right 8.556574e-04	k: 306	n:400000
Cons ci ratio: 1.889331e-03	ci left: 9.141139e-01	ci right 9.158451e-01	k: 365993	n:400000
KS ci ratio: 2.897081e-01	ci left: 3.913074e-04	ci right 5.261012e-04	k: 182	n:400000
ENG   400000 perm   142 sec   (2813 perm/sec)   p_kst 4.550000e-04   p_cons 9.149825e-01   p_joint 7.650000e-04

Joint ci ratio: 2.221982e-01	ci left: 6.742901e-04	ci right 8.450881e-04	k: 310	n:410000
Cons ci ratio: 1.864943e-03	ci left: 9.142255e-01	ci right 9.159345e-01	k: 375184	n:410000
KS ci ratio: 2.873628e-01	ci left: 3.885508e-04	ci right 5.211148e-04	k: 185	n:410000
ENG   410000 perm   148 sec   (2779 perm/sec)   p_kst 4.512195e-04   p_cons 9.150829e-01   p_joint 7.560976e-04

Joint ci ratio: 2.170242e-01	ci left: 6.919864e-04	ci right 8.626414e-04	k: 325	n:420000
Cons ci ratio: 1.842207e-03	ci left: 9.142697e-01	ci right 9.159579e-01	k: 384349	n:420000
KS ci ratio: 2.828366e-01	ci left: 3.925641e-04	ci right 5.240115e-04	k: 191	n:420000
ENG   420000 perm   153 sec   (2749 perm/sec)   p_kst 4.547619e-04   p_cons 9.151167e-01   p_joint 7.738095e-04

Joint ci ratio: 2.125075e-01	ci left: 7.067014e-04	ci right 8.768858e-04	k: 339	n:430000
Cons ci ratio: 1.820827e-03	ci left: 9.142653e-01	ci right 9.159338e-01	k: 393494	n:430000
KS ci ratio: 2.778168e-01	ci left: 3.985697e-04	ci right 5.292453e-04	k: 198	n:430000
ENG   430000 perm   158 sec   (2718 perm/sec)   p_kst 4.604651e-04   p_cons 9.151023e-01   p_joint 7.883721e-04

Joint ci ratio: 2.106574e-01	ci left: 7.035537e-04	ci right 8.713146e-04	k: 345	n:440000
Cons ci ratio: 1.798859e-03	ci left: 9.143753e-01	ci right 9.160238e-01	k: 402689	n:440000
KS ci ratio: 2.757466e-01	ci left: 3.958563e-04	ci right 5.245074e-04	k: 201	n:440000
ENG   440000 perm   164 sec   (2688 perm/sec)   p_kst 4.568182e-04   p_cons 9.152023e-01   p_joint 7.840909e-04

Joint ci ratio: 2.082635e-01	ci left: 7.047645e-04	ci right 8.706610e-04	k: 353	n:450000
Cons ci ratio: 1.779396e-03	ci left: 9.143287e-01	ci right 9.159593e-01	k: 411816	n:450000
KS ci ratio: 2.723959e-01	ci left: 3.974071e-04	ci right 5.247243e-04	k: 206	n:450000
ENG   450000 perm   169 sec   (2660 perm/sec)   p_kst 4.577778e-04   p_cons 9.151467e-01   p_joint 7.844444e-04

Joint ci ratio: 2.068087e-01	ci left: 6.997480e-04	ci right 8.631675e-04	k: 358	n:460000
Cons ci ratio: 1.759221e-03	ci left: 9.144022e-01	ci right 9.160143e-01	k: 420997	n:460000
KS ci ratio: 2.704437e-01	ci left: 3.948458e-04	ci right 5.202819e-04	k: 209	n:460000
ENG   460000 perm   175 sec   (2631 perm/sec)   p_kst 4.543478e-04   p_cons 9.152109e-01   p_joint 7.782609e-04

Joint ci ratio: 2.045422e-01	ci left: 7.010044e-04	ci right 8.626989e-04	k: 366	n:470000
Cons ci ratio: 1.740670e-03	ci left: 9.143871e-01	ci right 9.159822e-01	k: 430138	n:470000
KS ci ratio: 2.685328e-01	ci left: 3.923965e-04	ci right 5.160253e-04	k: 212	n:470000
ENG   470000 perm   181 sec   (2603 perm/sec)   p_kst 4.510638e-04   p_cons 9.151872e-01   p_joint 7.787234e-04

Joint ci ratio: 2.028908e-01	ci left: 6.982625e-04	ci right 8.578629e-04	k: 372	n:480000
Cons ci ratio: 1.721768e-03	ci left: 9.144565e-01	ci right 9.160344e-01	k: 439319	n:480000
KS ci ratio: 2.672816e-01	ci left: 3.881083e-04	ci right 5.097209e-04	k: 214	n:480000
ENG   480000 perm   186 sec   (2577 perm/sec)   p_kst 4.458333e-04   p_cons 9.152479e-01   p_joint 7.750000e-04

Joint ci ratio: 1.994439e-01	ci left: 7.092070e-04	ci right 8.682201e-04	k: 385	n:490000
Cons ci ratio: 1.703805e-03	ci left: 9.144923e-01	ci right 9.160538e-01	k: 448485	n:490000
KS ci ratio: 2.630333e-01	ci left: 3.935241e-04	ci right 5.145512e-04	k: 221	n:490000
ENG   490000 perm   192 sec   (2551 perm/sec)   p_kst 4.510204e-04   p_cons 9.152755e-01   p_joint 7.857143e-04

Joint ci ratio: 1.986744e-01	ci left: 7.007235e-04	ci right 8.571548e-04	k: 388	n:500000
Cons ci ratio: 1.685566e-03	ci left: 9.146031e-01	ci right 9.161480e-01	k: 457689	n:500000
KS ci ratio: 2.630345e-01	ci left: 3.856534e-04	ci right 5.042605e-04	k: 221	n:500000
ENG   500000 perm   198 sec   (2525 perm/sec)   p_kst 4.420000e-04   p_cons 9.153780e-01   p_joint 7.760000e-04

Joint ci ratio: 1.964150e-01	ci left: 7.037582e-04	ci right 8.588665e-04	k: 397	n:510000
Cons ci ratio: 1.668976e-03	ci left: 9.146093e-01	ci right 9.161389e-01	k: 466842	n:510000
KS ci ratio: 2.584186e-01	ci left: 3.927530e-04	ci right 5.110819e-04	k: 229	n:510000
ENG   510000 perm   204 sec   (2500 perm/sec)   p_kst 4.490196e-04   p_cons 9.153765e-01   p_joint 7.784314e-04

Joint ci ratio: 1.935185e-01	ci left: 7.121752e-04	ci right 8.665514e-04	k: 409	n:520000
Cons ci ratio: 1.653891e-03	ci left: 9.145187e-01	ci right 9.160344e-01	k: 475945	n:520000
KS ci ratio: 2.556546e-01	ci left: 3.941960e-04	ci right 5.114868e-04	k: 234	n:520000
ENG   520000 perm   210 sec   (2475 perm/sec)   p_kst 4.500000e-04   p_cons 9.152788e-01   p_joint 7.865385e-04

Joint ci ratio: 1.921182e-01	ci left: 7.095121e-04	ci right 8.620681e-04	k: 415	n:530000
Cons ci ratio: 1.638010e-03	ci left: 9.145453e-01	ci right 9.160464e-01	k: 485108	n:530000
KS ci ratio: 2.545742e-01	ci left: 3.902906e-04	ci right 5.058506e-04	k: 236	n:530000
ENG   530000 perm   216 sec   (2451 perm/sec)   p_kst 4.452830e-04   p_cons 9.152981e-01   p_joint 7.830189e-04

Joint ci ratio: 1.900729e-01	ci left: 7.122424e-04	ci right 8.635668e-04	k: 424	n:540000
Cons ci ratio: 1.623140e-03	ci left: 9.145170e-01	ci right 9.160044e-01	k: 494242	n:540000
KS ci ratio: 2.524528e-01	ci left: 3.899998e-04	ci right 5.043601e-04	k: 240	n:540000
ENG   540000 perm   223 sec   (2427 perm/sec)   p_kst 4.444444e-04   p_cons 9.152630e-01   p_joint 7.851852e-04

Joint ci ratio: 1.887456e-01	ci left: 7.096842e-04	ci right 8.592915e-04	k: 430	n:550000
Cons ci ratio: 1.607442e-03	ci left: 9.146085e-01	ci right 9.160817e-01	k: 503441	n:550000
KS ci ratio: 2.503836e-01	ci left: 3.897233e-04	ci right 5.029200e-04	k: 244	n:550000
ENG   550000 perm   229 sec   (2403 perm/sec)   p_kst 4.436364e-04   p_cons 9.153473e-01   p_joint 7.818182e-04

Joint ci ratio: 1.861710e-01	ci left: 7.174346e-04	ci right 8.663796e-04	k: 442	n:560000
Cons ci ratio: 1.592575e-03	ci left: 9.146591e-01	ci right 9.161187e-01	k: 512619	n:560000
KS ci ratio: 2.459067e-01	ci left: 3.978364e-04	ci right 5.110077e-04	k: 253	n:560000
ENG   560000 perm   235 sec   (2380 perm/sec)   p_kst 4.517857e-04   p_cons 9.153911e-01   p_joint 7.892857e-04

Joint ci ratio: 1.830958e-01	ci left: 7.299480e-04	ci right 8.787101e-04	k: 457	n:570000
Cons ci ratio: 1.578738e-03	ci left: 9.146464e-01	ci right 9.160932e-01	k: 521762	n:570000
KS ci ratio: 2.425861e-01	ci left: 4.023860e-04	ci right 5.150733e-04	k: 260	n:570000
ENG   570000 perm   242 sec   (2357 perm/sec)   p_kst 4.561404e-04   p_cons 9.153719e-01   p_joint 8.017544e-04

Joint ci ratio: 1.813228e-01	ci left: 7.321723e-04	ci right 8.797840e-04	k: 466	n:580000
Cons ci ratio: 1.564158e-03	ci left: 9.147432e-01	ci right 9.161768e-01	k: 530968	n:580000
KS ci ratio: 2.393966e-01	ci left: 4.067887e-04	ci right 5.189889e-04	k: 267	n:580000
ENG   580000 perm   249 sec   (2334 perm/sec)   p_kst 4.603448e-04   p_cons 9.154621e-01   p_joint 8.034483e-04

Joint ci ratio: 1.799791e-01	ci left: 7.310905e-04	ci right 8.772728e-04	k: 473	n:590000
Cons ci ratio: 1.550856e-03	ci left: 9.147483e-01	ci right 9.161697e-01	k: 540122	n:590000
KS ci ratio: 2.371941e-01	ci left: 4.078626e-04	ci right 5.191721e-04	k: 272	n:590000
ENG   590000 perm   255 sec   (2314 perm/sec)   p_kst 4.610169e-04   p_cons 9.154610e-01   p_joint 8.016949e-04

Joint ci ratio: 1.930581e-01	ci left: 6.203876e-04	ci right 7.545095e-04	k: 411	n:600000
Cons ci ratio: 1.537938e-03	ci left: 9.147482e-01	ci right 9.161578e-01	k: 549273	n:600000
KS ci ratio: 2.350513e-01	ci left: 4.089053e-04	ci right 5.193446e-04	k: 277	n:600000
ENG   600000 perm   262 sec   (2292 perm/sec)   p_kst 4.616667e-04   p_cons 9.154550e-01   p_joint 6.850000e-04

Joint ci ratio: 1.923596e-01	ci left: 6.148979e-04	ci right 7.472957e-04	k: 414	n:610000
Cons ci ratio: 1.525369e-03	ci left: 9.147449e-01	ci right 9.161429e-01	k: 558422	n:610000
KS ci ratio: 2.337935e-01	ci left: 4.068311e-04	ci right 5.160372e-04	k: 280	n:610000
ENG   610000 perm   268 sec   (2273 perm/sec)   p_kst 4.590164e-04   p_cons 9.154459e-01   p_joint 6.786885e-04

Joint ci ratio: 1.914397e-01	ci left: 6.111218e-04	ci right 7.420040e-04	k: 418	n:620000
Cons ci ratio: 1.512867e-03	ci left: 9.147661e-01	ci right 9.161526e-01	k: 567586	n:620000
KS ci ratio: 2.325557e-01	ci left: 4.048253e-04	ci right 5.128349e-04	k: 283	n:620000
ENG   620000 perm   275 sec   (2254 perm/sec)   p_kst 4.564516e-04   p_cons 9.154613e-01   p_joint 6.741935e-04

Joint ci ratio: 1.891948e-01	ci left: 6.165383e-04	ci right 7.468543e-04	k: 428	n:630000
Cons ci ratio: 1.500467e-03	ci left: 9.148073e-01	ci right 9.161825e-01	k: 576763	n:630000
KS ci ratio: 2.289554e-01	ci left: 4.118597e-04	ci right 5.198045e-04	k: 292	n:630000
ENG   630000 perm   282 sec   (2232 perm/sec)   p_kst 4.634921e-04   p_cons 9.154968e-01   p_joint 6.793651e-04

Joint ci ratio: 1.883193e-01	ci left: 6.128595e-04	ci right 7.417298e-04	k: 432	n:640000
Cons ci ratio: 1.489435e-03	ci left: 9.147359e-01	ci right 9.161009e-01	k: 585869	n:640000
KS ci ratio: 2.274085e-01	ci left: 4.113171e-04	ci right 5.182892e-04	k: 296	n:640000
ENG   640000 perm   289 sec   (2213 perm/sec)   p_kst 4.625000e-04   p_cons 9.154203e-01   p_joint 6.750000e-04

Joint ci ratio: 1.870281e-01	ci left: 6.122279e-04	ci right 7.399826e-04	k: 438	n:650000
Cons ci ratio: 1.478200e-03	ci left: 9.147131e-01	ci right 9.160678e-01	k: 595005	n:650000
KS ci ratio: 2.258925e-01	ci left: 4.107936e-04	ci right 5.168182e-04	k: 300	n:650000
ENG   650000 perm   296 sec   (2195 perm/sec)   p_kst 4.615385e-04   p_cons 9.153923e-01   p_joint 6.738462e-04

Joint ci ratio: 1.853467e-01	ci left: 6.145081e-04	ci right 7.414562e-04	k: 446	n:660000
Cons ci ratio: 1.467646e-03	ci left: 9.146454e-01	ci right 9.159903e-01	k: 604111	n:660000
KS ci ratio: 2.236740e-01	ci left: 4.131486e-04	ci right 5.185895e-04	k: 306	n:660000
ENG   660000 perm   303 sec   (2178 perm/sec)   p_kst 4.636364e-04   p_cons 9.153197e-01   p_joint 6.757576e-04

Joint ci ratio: 1.845233e-01	ci left: 6.110300e-04	ci right 7.366360e-04	k: 450	n:670000
Cons ci ratio: 1.457216e-03	ci left: 9.145903e-01	ci right 9.159255e-01	k: 613224	n:670000
KS ci ratio: 2.229494e-01	ci left: 4.098002e-04	ci right 5.140012e-04	k: 308	n:670000
ENG   670000 perm   310 sec   (2160 perm/sec)   p_kst 4.597015e-04   p_cons 9.152597e-01   p_joint 6.716418e-04

Joint ci ratio: 1.841162e-01	ci left: 6.048495e-04	ci right 7.288801e-04	k: 452	n:680000
Cons ci ratio: 1.446758e-03	ci left: 9.145634e-01	ci right 9.158889e-01	k: 622355	n:680000
KS ci ratio: 2.222318e-01	ci left: 4.065509e-04	ci right 5.095474e-04	k: 310	n:680000
ENG   680000 perm   317 sec   (2143 perm/sec)   p_kst 4.558824e-04   p_cons 9.152279e-01   p_joint 6.647059e-04

Joint ci ratio: 1.831086e-01	ci left: 6.029969e-04	ci right 7.258958e-04	k: 457	n:690000
Cons ci ratio: 1.435595e-03	ci left: 9.146376e-01	ci right 9.159531e-01	k: 631555	n:690000
KS ci ratio: 2.211679e-01	ci left: 4.047652e-04	ci right 5.067516e-04	k: 313	n:690000
ENG   690000 perm   325 sec   (2123 perm/sec)   p_kst 4.536232e-04   p_cons 9.152971e-01   p_joint 6.623188e-04

Joint ci ratio: 1.819210e-01	ci left: 6.025625e-04	ci right 7.244885e-04	k: 463	n:700000
Cons ci ratio: 1.425934e-03	ci left: 9.145736e-01	ci right 9.158801e-01	k: 640660	n:700000
KS ci ratio: 2.197726e-01	ci left: 4.043815e-04	ci right 5.055416e-04	k: 317	n:700000
ENG   700000 perm   332 sec   (2107 perm/sec)   p_kst 4.528571e-04   p_cons 9.152286e-01   p_joint 6.614286e-04

Joint ci ratio: 1.807561e-01	ci left: 6.021428e-04	ci right 7.231183e-04	k: 469	n:710000
Cons ci ratio: 1.415924e-03	ci left: 9.145708e-01	ci right 9.158681e-01	k: 649807	n:710000
KS ci ratio: 2.187434e-01	ci left: 4.026793e-04	ci right 5.028784e-04	k: 320	n:710000
ENG   710000 perm   340 sec   (2090 perm/sec)   p_kst 4.507042e-04   p_cons 9.152211e-01   p_joint 6.605634e-04

Joint ci ratio: 1.796134e-01	ci left: 6.017371e-04	ci right 7.217838e-04	k: 475	n:720000
Cons ci ratio: 1.406399e-03	ci left: 9.145374e-01	ci right 9.158259e-01	k: 658932	n:720000
KS ci ratio: 2.170594e-01	ci left: 4.036520e-04	ci right 5.032168e-04	k: 325	n:720000
ENG   720000 perm   348 sec   (2072 perm/sec)   p_kst 4.513889e-04   p_cons 9.151833e-01   p_joint 6.597222e-04

Joint ci ratio: 1.413763e-01	ci left: 9.776687e-04	ci right 1.127706e-03	k: 767	n:730000
Cons ci ratio: 1.396768e-03	ci left: 9.145380e-01	ci right 9.158176e-01	k: 668081	n:730000
KS ci ratio: 2.144436e-01	ci left: 4.084894e-04	ci right 5.078734e-04	k: 333	n:730000
ENG   730000 perm   355 sec   (2055 perm/sec)   p_kst 4.561644e-04   p_cons 9.151795e-01   p_joint 1.050685e-03

Joint ci ratio: 1.403745e-01	ci left: 9.787979e-04	ci right 1.127855e-03	k: 778	n:740000
Cons ci ratio: 1.387151e-03	ci left: 9.145589e-01	ci right 9.158297e-01	k: 677245	n:740000
KS ci ratio: 2.134872e-01	ci left: 4.068061e-04	ci right 5.052813e-04	k: 336	n:740000
ENG   740000 perm   363 sec   (2040 perm/sec)   p_kst 4.540541e-04   p_cons 9.151959e-01   p_joint 1.051351e-03

Joint ci ratio: 1.396595e-01	ci left: 9.760402e-04	ci right 1.123857e-03	k: 786	n:750000
Cons ci ratio: 1.377801e-03	ci left: 9.145713e-01	ci right 9.158335e-01	k: 686403	n:750000
KS ci ratio: 2.122315e-01	ci left: 4.064310e-04	ci right 5.041615e-04	k: 340	n:750000
ENG   750000 perm   370 sec   (2025 perm/sec)   p_kst 4.533333e-04   p_cons 9.152040e-01   p_joint 1.048000e-03

Joint ci ratio: 1.756017e-01	ci left: 5.977273e-04	ci right 7.140281e-04	k: 497	n:760000
Cons ci ratio: 1.368788e-03	ci left: 9.145662e-01	ci right 9.158202e-01	k: 695548	n:760000
KS ci ratio: 2.116122e-01	ci left: 4.035751e-04	ci right 5.002989e-04	k: 342	n:760000
ENG   760000 perm   378 sec   (2010 perm/sec)   p_kst 4.500000e-04   p_cons 9.151947e-01   p_joint 6.539474e-04

Joint ci ratio: 1.236333e-01	ci left: 1.223269e-03	ci right 1.385715e-03	k: 1003	n:770000
Cons ci ratio: 1.360052e-03	ci left: 9.145495e-01	ci right 9.157954e-01	k: 704684	n:770000
KS ci ratio: 2.100864e-01	ci left: 4.044845e-04	ci right 5.006374e-04	k: 347	n:770000
ENG   770000 perm   386 sec   (1994 perm/sec)   p_kst 4.506494e-04   p_cons 9.151740e-01   p_joint 1.302597e-03

Joint ci ratio: 1.227199e-01	ci left: 1.226224e-03	ci right 1.387772e-03	k: 1018	n:780000
Cons ci ratio: 1.350890e-03	ci left: 9.146014e-01	ci right 9.158391e-01	k: 713873	n:780000
KS ci ratio: 2.077120e-01	ci left: 4.090188e-04	ci right 5.050110e-04	k: 355	n:780000
ENG   780000 perm   394 sec   (1979 perm/sec)   p_kst 4.551282e-04   p_cons 9.152218e-01   p_joint 1.305128e-03

Joint ci ratio: 1.219445e-01	ci left: 1.226654e-03	ci right 1.387165e-03	k: 1031	n:790000
Cons ci ratio: 1.342468e-03	ci left: 9.145873e-01	ci right 9.158172e-01	k: 723011	n:790000
KS ci ratio: 2.062685e-01	ci left: 4.098425e-04	ci right 5.052751e-04	k: 360	n:790000
ENG   790000 perm   402 sec   (1966 perm/sec)   p_kst 4.556962e-04   p_cons 9.152038e-01   p_joint 1.305063e-03

Joint ci ratio: 1.184892e-01	ci left: 1.285281e-03	ci right 1.448364e-03	k: 1092	n:800000
Cons ci ratio: 1.334653e-03	ci left: 9.145209e-01	ci right 9.157436e-01	k: 732107	n:800000
KS ci ratio: 2.037438e-01	ci left: 4.153921e-04	ci right 5.107857e-04	k: 369	n:800000
ENG   800000 perm   410 sec   (1952 perm/sec)   p_kst 4.612500e-04   p_cons 9.151337e-01   p_joint 1.365000e-03

Joint ci ratio: 1.202662e-01	ci left: 1.231085e-03	ci right 1.389800e-03	k: 1060	n:810000
Cons ci ratio: 1.326181e-03	ci left: 9.145491e-01	ci right 9.157640e-01	k: 741278	n:810000
KS ci ratio: 2.029230e-01	ci left: 4.137789e-04	ci right 5.083718e-04	k: 372	n:810000
ENG   810000 perm   418 sec   (1938 perm/sec)   p_kst 4.592593e-04   p_cons 9.151580e-01   p_joint 1.308642e-03

Joint ci ratio: 1.197036e-01	ci left: 1.227901e-03	ci right 1.385412e-03	k: 1070	n:820000
Cons ci ratio: 1.317900e-03	ci left: 9.145729e-01	ci right 9.157802e-01	k: 750446	n:820000
KS ci ratio: 2.021121e-01	ci left: 4.122058e-04	ci right 5.060160e-04	k: 375	n:820000
ENG   820000 perm   426 sec   (1924 perm/sec)   p_kst 4.573171e-04   p_cons 9.151780e-01   p_joint 1.304878e-03

Joint ci ratio: 1.191489e-01	ci left: 1.224795e-03	ci right 1.381129e-03	k: 1080	n:830000
Cons ci ratio: 1.309935e-03	ci left: 9.145769e-01	ci right 9.157769e-01	k: 759598	n:830000
KS ci ratio: 2.007815e-01	ci left: 4.129597e-04	ci right 5.062469e-04	k: 380	n:830000
ENG   830000 perm   434 sec   (1910 perm/sec)   p_kst 4.578313e-04   p_cons 9.151783e-01   p_joint 1.301205e-03

Joint ci ratio: 1.160215e-01	ci left: 1.278388e-03	ci right 1.436987e-03	k: 1139	n:840000
Cons ci ratio: 1.302282e-03	ci left: 9.145604e-01	ci right 9.157534e-01	k: 768733	n:840000
KS ci ratio: 1.997358e-01	ci left: 4.125666e-04	ci right 5.052206e-04	k: 384	n:840000
ENG   840000 perm   443 sec   (1897 perm/sec)   p_kst 4.571429e-04   p_cons 9.151583e-01   p_joint 1.355952e-03

Joint ci ratio: 1.153656e-01	ci left: 1.278200e-03	ci right 1.435818e-03	k: 1152	n:850000
Cons ci ratio: 1.294271e-03	ci left: 9.146034e-01	ci right 9.157891e-01	k: 777918	n:850000
KS ci ratio: 1.992193e-01	ci left: 4.099483e-04	ci right 5.017472e-04	k: 386	n:850000
ENG   850000 perm   451 sec   (1884 perm/sec)   p_kst 4.541176e-04   p_cons 9.151976e-01   p_joint 1.355294e-03

Joint ci ratio: 1.148194e-01	ci left: 1.275760e-03	ci right 1.432281e-03	k: 1163	n:860000
Cons ci ratio: 1.286887e-03	ci left: 9.145871e-01	ci right 9.157659e-01	k: 787053	n:860000
KS ci ratio: 1.979447e-01	ci left: 4.107063e-04	ci right 5.020156e-04	k: 391	n:860000
ENG   860000 perm   460 sec   (1871 perm/sec)   p_kst 4.546512e-04   p_cons 9.151779e-01   p_joint 1.352326e-03

Joint ci ratio: 1.137970e-01	ci left: 1.284544e-03	ci right 1.440645e-03	k: 1184	n:870000
Cons ci ratio: 1.279648e-03	ci left: 9.145688e-01	ci right 9.157410e-01	k: 796186	n:870000
KS ci ratio: 1.959548e-01	ci left: 4.147276e-04	ci right 5.058934e-04	k: 399	n:870000
ENG   870000 perm   469 sec   (1856 perm/sec)   p_kst 4.586207e-04   p_cons 9.151563e-01   p_joint 1.360920e-03

Joint ci ratio: 1.132252e-01	ci left: 1.283196e-03	ci right 1.438298e-03	k: 1196	n:880000
Cons ci ratio: 1.271840e-03	ci left: 9.146354e-01	ci right 9.158005e-01	k: 805393	n:880000
KS ci ratio: 1.952243e-01	ci left: 4.132570e-04	ci right 5.037205e-04	k: 402	n:880000
ENG   880000 perm   477 sec   (1844 perm/sec)   p_kst 4.568182e-04   p_cons 9.152193e-01   p_joint 1.359091e-03

Joint ci ratio: 1.126620e-01	ci left: 1.281880e-03	ci right 1.436001e-03	k: 1208	n:890000
Cons ci ratio: 1.264200e-03	ci left: 9.146971e-01	ci right 9.158553e-01	k: 814597	n:890000
KS ci ratio: 1.952248e-01	ci left: 4.086135e-04	ci right 4.980608e-04	k: 402	n:890000
ENG   890000 perm   486 sec   (1830 perm/sec)   p_kst 4.516854e-04   p_cons 9.152775e-01   p_joint 1.357303e-03

Joint ci ratio: 1.118780e-01	ci left: 1.285996e-03	ci right 1.439465e-03	k: 1225	n:900000
Cons ci ratio: 1.257047e-03	ci left: 9.147139e-01	ci right 9.158656e-01	k: 823762	n:900000
KS ci ratio: 1.937874e-01	ci left: 4.104154e-04	ci right 4.995177e-04	k: 408	n:900000
ENG   900000 perm   495 sec   (1817 perm/sec)   p_kst 4.533333e-04   p_cons 9.152911e-01   p_joint 1.361111e-03

Joint ci ratio: 1.113796e-01	ci left: 1.283614e-03	ci right 1.436072e-03	k: 1236	n:910000
Cons ci ratio: 1.250138e-03	ci left: 9.147150e-01	ci right 9.158603e-01	k: 832913	n:910000
KS ci ratio: 1.930807e-01	ci left: 4.090424e-04	ci right 4.974847e-04	k: 411	n:910000
ENG   910000 perm   504 sec   (1805 perm/sec)   p_kst 4.516484e-04   p_cons 9.152890e-01   p_joint 1.358242e-03

Joint ci ratio: 1.107989e-01	ci left: 1.283400e-03	ci right 1.434985e-03	k: 1249	n:920000
Cons ci ratio: 1.243377e-03	ci left: 9.147117e-01	ci right 9.158509e-01	k: 842060	n:920000
KS ci ratio: 1.923817e-01	ci left: 4.076998e-04	ci right 4.954953e-04	k: 414	n:920000
ENG   920000 perm   513 sec   (1793 perm/sec)   p_kst 4.500000e-04   p_cons 9.152826e-01   p_joint 1.357609e-03

Joint ci ratio: 1.111117e-01	ci left: 1.262281e-03	ci right 1.411820e-03	k: 1242	n:930000
Cons ci ratio: 1.236621e-03	ci left: 9.147215e-01	ci right 9.158544e-01	k: 851219	n:930000
KS ci ratio: 1.905535e-01	ci left: 4.115058e-04	ci right 4.991813e-04	k: 422	n:930000
ENG   930000 perm   522 sec   (1782 perm/sec)   p_kst 4.537634e-04   p_cons 9.152892e-01   p_joint 1.335484e-03

Joint ci ratio: 1.105352e-01	ci left: 1.262299e-03	ci right 1.411014e-03	k: 1255	n:940000
Cons ci ratio: 1.229906e-03	ci left: 9.147396e-01	ci right 9.158664e-01	k: 860386	n:940000
KS ci ratio: 1.898815e-01	ci left: 4.101676e-04	ci right 4.972142e-04	k: 425	n:940000
ENG   940000 perm   531 sec   (1771 perm/sec)   p_kst 4.521277e-04   p_cons 9.153043e-01   p_joint 1.335106e-03

Joint ci ratio: 1.100545e-01	ci left: 1.260271e-03	ci right 1.408060e-03	k: 1266	n:950000
Cons ci ratio: 1.223267e-03	ci left: 9.147615e-01	ci right 9.158822e-01	k: 869557	n:950000
KS ci ratio: 1.889963e-01	ci left: 4.098609e-04	ci right 4.963903e-04	k: 429	n:950000
ENG   950000 perm   540 sec   (1760 perm/sec)   p_kst 4.515789e-04   p_cons 9.153232e-01   p_joint 1.332632e-03

Joint ci ratio: 1.092807e-01	ci left: 1.265379e-03	ci right 1.412656e-03	k: 1284	n:960000
Cons ci ratio: 1.216733e-03	ci left: 9.147830e-01	ci right 9.158978e-01	k: 878728	n:960000
KS ci ratio: 1.879069e-01	ci left: 4.105541e-04	ci right 4.966733e-04	k: 434	n:960000
ENG   960000 perm   549 sec   (1747 perm/sec)   p_kst 4.520833e-04   p_cons 9.153417e-01   p_joint 1.337500e-03

Joint ci ratio: 1.088161e-01	ci left: 1.263365e-03	ci right 1.409742e-03	k: 1295	n:970000
Cons ci ratio: 1.210416e-03	ci left: 9.147896e-01	ci right 9.158986e-01	k: 887885	n:970000
KS ci ratio: 1.870490e-01	ci left: 4.102518e-04	ci right 4.958700e-04	k: 438	n:970000
ENG   970000 perm   559 sec   (1736 perm/sec)   p_kst 4.515464e-04   p_cons 9.153454e-01   p_joint 1.335052e-03

Joint ci ratio: 1.082744e-01	ci left: 1.263378e-03	ci right 1.408982e-03	k: 1308	n:980000
Cons ci ratio: 1.204490e-03	ci left: 9.147583e-01	ci right 9.158617e-01	k: 897005	n:980000
KS ci ratio: 1.859927e-01	ci left: 4.109294e-04	ci right 4.961501e-04	k: 443	n:980000
ENG   980000 perm   568 sec   (1724 perm/sec)   p_kst 4.520408e-04   p_cons 9.153112e-01   p_joint 1.334694e-03

Joint ci ratio: 1.199415e-01	ci left: 1.013123e-03	ci right 1.143360e-03	k: 1066	n:990000
Cons ci ratio: 1.198353e-03	ci left: 9.147660e-01	ci right 9.158639e-01	k: 906163	n:990000
KS ci ratio: 1.841354e-01	ci left: 4.154484e-04	ci right 5.006500e-04	k: 452	n:990000
ENG   990000 perm   579 sec   (1711 perm/sec)   p_kst 4.565657e-04   p_cons 9.153162e-01   p_joint 1.076768e-03

Joint ci ratio: 1.193280e-01	ci left: 1.013662e-03	ci right 1.143255e-03	k: 1077	n:1000000
Cons ci ratio: 1.192217e-03	ci left: 9.147857e-01	ci right 9.158779e-01	k: 915333	n:1000000
KS ci ratio: 1.833279e-01	ci left: 4.151100e-04	ci right 4.998273e-04	k: 456	n:1000000
ENG   1000000 perm   588 sec   (1700 perm/sec)   p_kst 4.560000e-04   p_cons 9.153330e-01   p_joint 1.077000e-03

Joint ci ratio: 1.186692e-01	ci left: 1.015154e-03	ci right 1.144171e-03	k: 1089	n:1010000
Cons ci ratio: 1.186166e-03	ci left: 9.148059e-01	ci right 9.158927e-01	k: 924504	n:1010000
KS ci ratio: 1.825308e-01	ci left: 4.147790e-04	ci right 4.990200e-04	k: 460	n:1010000
ENG   1010000 perm   598 sec   (1690 perm/sec)   p_kst 4.554455e-04   p_cons 9.153505e-01   p_joint 1.078218e-03

Joint ci ratio: 1.180749e-01	ci left: 1.015666e-03	ci right 1.144057e-03	k: 1100	n:1020000
Cons ci ratio: 1.180475e-03	ci left: 9.147904e-01	ci right 9.158719e-01	k: 933639	n:1020000
KS ci ratio: 1.817441e-01	ci left: 4.144553e-04	ci right 4.982279e-04	k: 464	n:1020000
ENG   1020000 perm   607 sec   (1679 perm/sec)   p_kst 4.549020e-04   p_cons 9.153324e-01   p_joint 1.078431e-03

Joint ci ratio: 1.172259e-01	ci left: 1.020882e-03	ci right 1.148940e-03	k: 1116	n:1030000
Cons ci ratio: 1.174741e-03	ci left: 9.147918e-01	ci right 9.158680e-01	k: 942791	n:1030000
KS ci ratio: 1.800100e-01	ci left: 4.187738e-04	ci right 5.025236e-04	k: 473	n:1030000
ENG   1030000 perm   617 sec   (1668 perm/sec)   p_kst 4.592233e-04   p_cons 9.153311e-01   p_joint 1.083495e-03

Joint ci ratio: 1.168605e-01	ci left: 1.017600e-03	ci right 1.144820e-03	k: 1123	n:1040000
Cons ci ratio: 1.169306e-03	ci left: 9.147642e-01	ci right 9.158354e-01	k: 951913	n:1040000
KS ci ratio: 1.790680e-01	ci left: 4.193388e-04	ci right 5.027152e-04	k: 478	n:1040000
ENG   1040000 perm   627 sec   (1658 perm/sec)   p_kst 4.596154e-04   p_cons 9.153010e-01   p_joint 1.079808e-03

Joint ci ratio: 1.163442e-01	ci left: 1.017155e-03	ci right 1.143719e-03	k: 1133	n:1050000
Cons ci ratio: 1.163939e-03	ci left: 9.147381e-01	ci right 9.158044e-01	k: 961036	n:1050000
KS ci ratio: 1.783251e-01	ci left: 4.189842e-04	ci right 5.019072e-04	k: 482	n:1050000
ENG   1050000 perm   638 sec   (1647 perm/sec)   p_kst 4.590476e-04   p_cons 9.152724e-01   p_joint 1.079048e-03

Joint ci ratio: 1.156324e-01	ci left: 1.020383e-03	ci right 1.146519e-03	k: 1147	n:1060000
Cons ci ratio: 1.158300e-03	ci left: 9.147589e-01	ci right 9.158200e-01	k: 970208	n:1060000
KS ci ratio: 1.766861e-01	ci left: 4.231449e-04	ci right 5.060395e-04	k: 491	n:1060000
ENG   1060000 perm   648 sec   (1635 perm/sec)   p_kst 4.632075e-04   p_cons 9.152906e-01   p_joint 1.082075e-03

Joint ci ratio: 1.150327e-01	ci left: 1.021738e-03	ci right 1.147343e-03	k: 1159	n:1070000
Cons ci ratio: 1.153034e-03	ci left: 9.147399e-01	ci right 9.157962e-01	k: 979338	n:1070000
KS ci ratio: 1.757951e-01	ci left: 4.236571e-04	ci right 5.061890e-04	k: 496	n:1070000
ENG   1070000 perm   658 sec   (1625 perm/sec)   p_kst 4.635514e-04   p_cons 9.152692e-01   p_joint 1.083178e-03

Joint ci ratio: 1.428029e-01	ci left: 6.474285e-04	ci right 7.478732e-04	k: 752	n:1080000
Cons ci ratio: 1.084465e-03	ci left: 9.231513e-01	ci right 9.241539e-01	k: 997546	n:1080000
KS ci ratio: 1.747434e-01	ci left: 4.250462e-04	ci right 5.073010e-04	k: 502	n:1080000
ENG   1080000 perm   669 sec   (1615 perm/sec)   p_kst 4.648148e-04   p_cons 9.236537e-01   p_joint 6.962963e-04

Joint ci ratio: 1.422374e-01	ci left: 6.467971e-04	ci right 7.467127e-04	k: 758	n:1090000
Cons ci ratio: 1.079370e-03	ci left: 9.231678e-01	ci right 9.241657e-01	k: 1006798	n:1090000
KS ci ratio: 1.740527e-01	ci left: 4.246562e-04	ci right 5.064767e-04	k: 506	n:1090000
ENG   1090000 perm   679 sec   (1604 perm/sec)   p_kst 4.642202e-04   p_cons 9.236679e-01   p_joint 6.954128e-04

Joint ci ratio: 1.414936e-01	ci left: 6.479317e-04	ci right 7.474551e-04	k: 766	n:1100000
Cons ci ratio: 1.074187e-03	ci left: 9.232051e-01	ci right 9.241982e-01	k: 1016073	n:1100000
KS ci ratio: 1.730318e-01	ci left: 4.260134e-04	ci right 5.075635e-04	k: 512	n:1100000
ENG   1100000 perm   690 sec   (1593 perm/sec)   p_kst 4.654545e-04   p_cons 9.237027e-01   p_joint 6.963636e-04

Joint ci ratio: 1.407613e-01	ci left: 6.490472e-04	ci right 7.481827e-04	k: 774	n:1110000
Cons ci ratio: 1.069153e-03	ci left: 9.232317e-01	ci right 9.242202e-01	k: 1025337	n:1110000
KS ci ratio: 1.721946e-01	ci left: 4.264853e-04	ci right 5.076898e-04	k: 517	n:1110000
ENG   1110000 perm   701 sec   (1584 perm/sec)   p_kst 4.657658e-04   p_cons 9.237270e-01   p_joint 6.972973e-04

Joint ci ratio: 1.399509e-01	ci left: 6.510058e-04	ci right 7.498202e-04	k: 783	n:1120000
Cons ci ratio: 1.064014e-03	ci left: 9.232811e-01	ci right 9.242649e-01	k: 1034627	n:1120000
KS ci ratio: 1.712059e-01	ci left: 4.278044e-04	ci right 5.087440e-04	k: 523	n:1120000
ENG   1120000 perm   712 sec   (1574 perm/sec)   p_kst 4.669643e-04   p_cons 9.237741e-01   p_joint 6.991071e-04

Joint ci ratio: 1.393303e-01	ci left: 6.512229e-04	ci right 7.495956e-04	k: 790	n:1130000
Cons ci ratio: 1.059506e-03	ci left: 9.232551e-01	ci right 9.242347e-01	k: 1043833	n:1130000
KS ci ratio: 1.703948e-01	ci left: 4.282541e-04	ci right 5.088555e-04	k: 528	n:1130000
ENG   1130000 perm   722 sec   (1565 perm/sec)   p_kst 4.672566e-04   p_cons 9.237460e-01   p_joint 6.991150e-04

Joint ci ratio: 1.382850e-01	ci left: 6.556713e-04	ci right 7.539117e-04	k: 802	n:1140000
Cons ci ratio: 1.054786e-03	ci left: 9.232657e-01	ci right 9.242409e-01	k: 1053080	n:1140000
KS ci ratio: 1.692783e-01	ci left: 4.303769e-04	ci right 5.107929e-04	k: 535	n:1140000
ENG   1140000 perm   732 sec   (1556 perm/sec)   p_kst 4.692982e-04   p_cons 9.237544e-01   p_joint 7.035088e-04

Joint ci ratio: 1.372629e-01	ci left: 6.600450e-04	ci right 7.581500e-04	k: 814	n:1150000
Cons ci ratio: 1.049792e-03	ci left: 9.233214e-01	ci right 9.242921e-01	k: 1062379	n:1150000
KS ci ratio: 1.678745e-01	ci left: 4.341305e-04	ci right 5.145071e-04	k: 544	n:1150000
ENG   1150000 perm   743 sec   (1547 perm/sec)   p_kst 4.730435e-04   p_cons 9.238078e-01   p_joint 7.078261e-04

Joint ci ratio: 1.367605e-01	ci left: 6.593501e-04	ci right 7.569639e-04	k: 820	n:1160000
Cons ci ratio: 1.045277e-03	ci left: 9.233209e-01	ci right 9.242874e-01	k: 1071614	n:1160000
KS ci ratio: 1.674145e-01	ci left: 4.328657e-04	ci right 5.127664e-04	k: 547	n:1160000
ENG   1160000 perm   754 sec   (1538 perm/sec)   p_kst 4.715517e-04   p_cons 9.238052e-01   p_joint 7.068966e-04

Joint ci ratio: 1.360169e-01	ci left: 6.611445e-04	ci right 7.584487e-04	k: 829	n:1170000
Cons ci ratio: 1.041034e-03	ci left: 9.232912e-01	ci right 9.242537e-01	k: 1080815	n:1170000
KS ci ratio: 1.663552e-01	ci left: 4.348990e-04	ci right 5.146163e-04	k: 554	n:1170000
ENG   1170000 perm   765 sec   (1529 perm/sec)   p_kst 4.735043e-04   p_cons 9.237735e-01   p_joint 7.085470e-04

Joint ci ratio: 1.358536e-01	ci left: 6.571788e-04	ci right 7.537738e-04	k: 831	n:1180000
Cons ci ratio: 1.036724e-03	ci left: 9.232782e-01	ci right 9.242367e-01	k: 1090035	n:1180000
KS ci ratio: 1.662058e-01	ci left: 4.320256e-04	ci right 5.111379e-04	k: 555	n:1180000
ENG   1180000 perm   776 sec   (1520 perm/sec)   p_kst 4.703390e-04   p_cons 9.237585e-01   p_joint 7.042373e-04

Joint ci ratio: 1.352857e-01	ci left: 6.573391e-04	ci right 7.535213e-04	k: 838	n:1190000
Cons ci ratio: 1.032529e-03	ci left: 9.232570e-01	ci right 9.242116e-01	k: 1099245	n:1190000
KS ci ratio: 1.654634e-01	ci left: 4.324224e-04	ci right 5.112185e-04	k: 560	n:1190000
ENG   1190000 perm   788 sec   (1510 perm/sec)   p_kst 4.705882e-04   p_cons 9.237353e-01   p_joint 7.042017e-04

Joint ci ratio: 1.346452e-01	ci left: 6.583029e-04	ci right 7.541336e-04	k: 846	n:1200000
Cons ci ratio: 1.028165e-03	ci left: 9.232662e-01	ci right 9.242168e-01	k: 1108491	n:1200000
KS ci ratio: 1.647310e-01	ci left: 4.328134e-04	ci right 5.112970e-04	k: 565	n:1200000
ENG   1200000 perm   800 sec   (1501 perm/sec)   p_kst 4.708333e-04   p_cons 9.237425e-01   p_joint 7.050000e-04

Joint ci ratio: 1.342496e-01	ci left: 6.568556e-04	ci right 7.521722e-04	k: 851	n:1210000
Cons ci ratio: 1.024096e-03	ci left: 9.232421e-01	ci right 9.241889e-01	k: 1117697	n:1210000
KS ci ratio: 1.642962e-01	ci left: 4.316137e-04	ci right 5.096528e-04	k: 568	n:1210000
ENG   1210000 perm   811 sec   (1492 perm/sec)   p_kst 4.694215e-04   p_cons 9.237165e-01   p_joint 7.033058e-04

Joint ci ratio: 1.338576e-01	ci left: 6.554324e-04	ci right 7.502426e-04	k: 856	n:1220000
Cons ci ratio: 1.019981e-03	ci left: 9.232316e-01	ci right 9.241746e-01	k: 1126919	n:1220000
KS ci ratio: 1.637218e-01	ci left: 4.312200e-04	ci right 5.088884e-04	k: 572	n:1220000
ENG   1220000 perm   822 sec   (1484 perm/sec)   p_kst 4.688525e-04   p_cons 9.237041e-01   p_joint 7.016393e-04

Joint ci ratio: 1.334689e-01	ci left: 6.540327e-04	ci right 7.483440e-04	k: 861	n:1230000
Cons ci ratio: 1.015990e-03	ci left: 9.232107e-01	ci right 9.241499e-01	k: 1136128	n:1230000
KS ci ratio: 1.632950e-01	ci left: 4.300533e-04	ci right 5.072899e-04	k: 575	n:1230000
ENG   1230000 perm   834 sec   (1476 perm/sec)   p_kst 4.674797e-04   p_cons 9.236813e-01   p_joint 7.000000e-04

Joint ci ratio: 1.327774e-01	ci left: 6.557747e-04	ci right 7.498086e-04	k: 870	n:1240000
Cons ci ratio: 1.012098e-03	ci left: 9.231828e-01	ci right 9.241184e-01	k: 1145328	n:1240000
KS ci ratio: 1.623116e-01	ci left: 4.320004e-04	ci right 5.090738e-04	k: 582	n:1240000
ENG   1240000 perm   845 sec   (1468 perm/sec)   p_kst 4.693548e-04   p_cons 9.236516e-01   p_joint 7.016129e-04

Joint ci ratio: 1.323225e-01	ci left: 6.551693e-04	ci right 7.487692e-04	k: 876	n:1250000
Cons ci ratio: 1.008016e-03	ci left: 9.231883e-01	ci right 9.241201e-01	k: 1154569	n:1250000
KS ci ratio: 1.620341e-01	ci left: 4.300794e-04	ci right 5.066661e-04	k: 584	n:1250000
ENG   1250000 perm   856 sec   (1460 perm/sec)   p_kst 4.672000e-04   p_cons 9.236552e-01   p_joint 7.008000e-04

Joint ci ratio: 1.320970e-01	ci left: 6.522717e-04	ci right 7.452864e-04	k: 879	n:1260000
Cons ci ratio: 1.003723e-03	ci left: 9.232303e-01	ci right 9.241582e-01	k: 1163856	n:1260000
KS ci ratio: 1.617580e-01	ci left: 4.281890e-04	ci right 5.042965e-04	k: 586	n:1260000
ENG   1260000 perm   868 sec   (1452 perm/sec)   p_kst 4.650794e-04   p_cons 9.236952e-01   p_joint 6.976190e-04

Joint ci ratio: 1.317234e-01	ci left: 6.509427e-04	ci right 7.434849e-04	k: 884	n:1270000
Cons ci ratio: 9.999027e-04	ci left: 9.232124e-01	ci right 9.241368e-01	k: 1173068	n:1270000
KS ci ratio: 1.613463e-01	ci left: 4.270841e-04	ci right 5.027834e-04	k: 589	n:1270000
ENG   1270000 perm   879 sec   (1444 perm/sec)   p_kst 4.637795e-04   p_cons 9.236756e-01   p_joint 6.960630e-04

Joint ci ratio: 1.309853e-01	ci left: 6.534131e-04	ci right 7.457454e-04	k: 894	n:1280000
Cons ci ratio: 9.959933e-04	ci left: 9.232137e-01	ci right 9.241344e-01	k: 1182304	n:1280000
KS ci ratio: 1.608022e-01	ci left: 4.267466e-04	ci right 5.021062e-04	k: 593	n:1280000
ENG   1280000 perm   891 sec   (1436 perm/sec)   p_kst 4.632812e-04   p_cons 9.236750e-01   p_joint 6.984375e-04

Joint ci ratio: 1.303315e-01	ci left: 6.550966e-04	ci right 7.471690e-04	k: 903	n:1290000
Cons ci ratio: 9.924403e-04	ci left: 9.231706e-01	ci right 9.240880e-01	k: 1191483	n:1290000
KS ci ratio: 1.599960e-01	ci left: 4.279030e-04	ci right 5.030516e-04	k: 599	n:1290000
ENG   1290000 perm   904 sec   (1428 perm/sec)   p_kst 4.643411e-04   p_cons 9.236302e-01   p_joint 7.000000e-04

Joint ci ratio: 1.296164e-01	ci left: 6.574996e-04	ci right 7.493638e-04	k: 913	n:1300000
Cons ci ratio: 9.885366e-04	ci left: 9.231837e-01	ci right 9.240975e-01	k: 1200734	n:1300000
KS ci ratio: 1.589398e-01	ci left: 4.305197e-04	ci right 5.055811e-04	k: 607	n:1300000
ENG   1300000 perm   916 sec   (1420 perm/sec)   p_kst 4.669231e-04   p_cons 9.236415e-01   p_joint 7.023077e-04

Joint ci ratio: 1.291229e-01	ci left: 6.576511e-04	ci right 7.491598e-04	k: 920	n:1310000
Cons ci ratio: 9.846732e-04	ci left: 9.231974e-01	ci right 9.241076e-01	k: 1209986	n:1310000
KS ci ratio: 1.581612e-01	ci left: 4.316318e-04	ci right 5.064834e-04	k: 613	n:1310000
ENG   1310000 perm   928 sec   (1411 perm/sec)   p_kst 4.679389e-04   p_cons 9.236534e-01   p_joint 7.022901e-04

Joint ci ratio: 1.287740e-01	ci left: 6.563346e-04	ci right 7.473944e-04	k: 925	n:1320000
Cons ci ratio: 9.811446e-04	ci left: 9.231691e-01	ci right 9.240760e-01	k: 1219183	n:1320000
KS ci ratio: 1.580328e-01	ci left: 4.290894e-04	ci right 5.034340e-04	k: 614	n:1320000
ENG   1320000 perm   941 sec   (1403 perm/sec)   p_kst 4.651515e-04   p_cons 9.236235e-01   p_joint 7.007576e-04

Joint ci ratio: 1.283588e-01	ci left: 6.557659e-04	ci right 7.464312e-04	k: 931	n:1330000
Cons ci ratio: 9.773930e-04	ci left: 9.231789e-01	ci right 9.240824e-01	k: 1228430	n:1330000
KS ci ratio: 1.577766e-01	ci left: 4.273075e-04	ci right 5.012120e-04	k: 616	n:1330000
ENG   1330000 perm   953 sec   (1396 perm/sec)   p_kst 4.631579e-04   p_cons 9.236316e-01   p_joint 7.000000e-04

Joint ci ratio: 1.278114e-01	ci left: 6.566510e-04	ci right 7.470221e-04	k: 939	n:1340000
Cons ci ratio: 9.736172e-04	ci left: 9.231983e-01	ci right 9.240983e-01	k: 1237690	n:1340000
KS ci ratio: 1.570149e-01	ci left: 4.284199e-04	ci right 5.021254e-04	k: 622	n:1340000
ENG   1340000 perm   965 sec   (1389 perm/sec)   p_kst 4.641791e-04   p_cons 9.236493e-01   p_joint 7.007463e-04

Joint ci ratio: 1.271368e-01	ci left: 6.589582e-04	ci right 7.491321e-04	k: 949	n:1350000
Cons ci ratio: 9.697268e-04	ci left: 9.232405e-01	ci right 9.241369e-01	k: 1246981	n:1350000
KS ci ratio: 1.562642e-01	ci left: 4.295166e-04	ci right 5.030244e-04	k: 628	n:1350000
ENG   1350000 perm   977 sec   (1382 perm/sec)   p_kst 4.651852e-04   p_cons 9.236896e-01   p_joint 7.029630e-04

Joint ci ratio: 1.268036e-01	ci left: 6.576726e-04	ci right 7.474170e-04	k: 954	n:1360000
Cons ci ratio: 9.662502e-04	ci left: 9.232282e-01	ci right 9.241214e-01	k: 1256199	n:1360000
KS ci ratio: 1.558929e-01	ci left: 4.284782e-04	ci right 5.016177e-04	k: 631	n:1360000
ENG   1360000 perm   990 sec   (1374 perm/sec)   p_kst 4.639706e-04   p_cons 9.236757e-01   p_joint 7.014706e-04

Joint ci ratio: 1.260794e-01	ci left: 6.606474e-04	ci right 7.502443e-04	k: 965	n:1370000
Cons ci ratio: 9.626164e-04	ci left: 9.232447e-01	ci right 9.241346e-01	k: 1265456	n:1370000
KS ci ratio: 1.547944e-01	ci left: 4.316646e-04	ci right 5.047807e-04	k: 640	n:1370000
ENG   1370000 perm   1002 sec   (1367 perm/sec)   p_kst 4.671533e-04   p_cons 9.236905e-01   p_joint 7.043796e-04

Joint ci ratio: 1.256251e-01	ci left: 6.607728e-04	ci right 7.500398e-04	k: 972	n:1380000
Cons ci ratio: 9.590922e-04	ci left: 9.232507e-01	ci right 9.241373e-01	k: 1274699	n:1380000
KS ci ratio: 1.541942e-01	ci left: 4.320197e-04	ci right 5.048860e-04	k: 645	n:1380000
ENG   1380000 perm   1015 sec   (1360 perm/sec)   p_kst 4.673913e-04   p_cons 9.236949e-01   p_joint 7.043478e-04

Joint ci ratio: 9.056419e-02	ci left: 1.285071e-03	ci right 1.407669e-03	k: 1870	n:1390000
Cons ci ratio: 9.555577e-04	ci left: 9.232639e-01	ci right 9.241473e-01	k: 1283952	n:1390000
KS ci ratio: 1.533654e-01	ci left: 4.337539e-04	ci right 5.064833e-04	k: 652	n:1390000
ENG   1390000 perm   1027 sec   (1353 perm/sec)   p_kst 4.690647e-04   p_cons 9.237065e-01   p_joint 1.345324e-03

Joint ci ratio: 9.015543e-02	ci left: 1.287760e-03	ci right 1.410032e-03	k: 1887	n:1400000
Cons ci ratio: 9.520282e-04	ci left: 9.232819e-01	ci right 9.241620e-01	k: 1293212	n:1400000
KS ci ratio: 1.525498e-01	ci left: 4.354643e-04	ci right 5.080568e-04	k: 659	n:1400000
ENG   1400000 perm   1040 sec   (1346 perm/sec)   p_kst 4.707143e-04   p_cons 9.237229e-01   p_joint 1.347857e-03

Joint ci ratio: 8.989402e-02	ci left: 1.286253e-03	ci right 1.408009e-03	k: 1898	n:1410000
Cons ci ratio: 9.487380e-04	ci left: 9.232698e-01	ci right 9.241469e-01	k: 1302430	n:1410000
KS ci ratio: 1.519752e-01	ci left: 4.357869e-04	ci right 5.081346e-04	k: 664	n:1410000
ENG   1410000 perm   1053 sec   (1339 perm/sec)   p_kst 4.709220e-04   p_cons 9.237092e-01   p_joint 1.346099e-03

Joint ci ratio: 1.233633e-01	ci left: 6.667223e-04	ci right 7.550530e-04	k: 1008	n:1420000
Cons ci ratio: 9.453588e-04	ci left: 9.232763e-01	ci right 9.241502e-01	k: 1311674	n:1420000
KS ci ratio: 1.514070e-01	ci left: 4.361055e-04	ci right 5.082109e-04	k: 669	n:1420000
ENG   1420000 perm   1066 sec   (1332 perm/sec)   p_kst 4.711268e-04   p_cons 9.237141e-01   p_joint 7.098592e-04

Joint ci ratio: 1.228771e-01	ci left: 6.674820e-04	ci right 7.555395e-04	k: 1016	n:1430000
Cons ci ratio: 9.422071e-04	ci left: 9.232539e-01	ci right 9.241248e-01	k: 1320877	n:1430000
KS ci ratio: 1.506221e-01	ci left: 4.377660e-04	ci right 5.097368e-04	k: 676	n:1430000
ENG   1430000 perm   1079 sec   (1326 perm/sec)   p_kst 4.727273e-04   p_cons 9.236902e-01   p_joint 7.104895e-04

Joint ci ratio: 8.884734e-02	ci left: 1.290008e-03	ci right 1.410623e-03	k: 1943	n:1440000
Cons ci ratio: 9.389386e-04	ci left: 9.232541e-01	ci right 9.241220e-01	k: 1330112	n:1440000
KS ci ratio: 1.500690e-01	ci left: 4.380675e-04	ci right 5.097998e-04	k: 681	n:1440000
ENG   1440000 perm   1092 sec   (1319 perm/sec)   p_kst 4.729167e-04   p_cons 9.236889e-01   p_joint 1.349306e-03

Joint ci ratio: 8.837108e-02	ci left: 1.295273e-03	ci right 1.415698e-03	k: 1964	n:1450000
Cons ci ratio: 9.356673e-04	ci left: 9.232598e-01	ci right 9.241247e-01	k: 1339355	n:1450000
KS ci ratio: 1.491963e-01	ci left: 4.403571e-04	ci right 5.120075e-04	k: 689	n:1450000
ENG   1450000 perm   1105 sec   (1312 perm/sec)   p_kst 4.751724e-04   p_cons 9.236931e-01   p_joint 1.354483e-03

Joint ci ratio: 8.819191e-02	ci left: 1.291760e-03	ci right 1.411602e-03	k: 1972	n:1460000
Cons ci ratio: 9.324345e-04	ci left: 9.232648e-01	ci right 9.241267e-01	k: 1348597	n:1460000
KS ci ratio: 1.486586e-01	ci left: 4.406380e-04	ci right 5.120528e-04	k: 694	n:1460000
ENG   1460000 perm   1120 sec   (1304 perm/sec)   p_kst 4.753425e-04   p_cons 9.236966e-01   p_joint 1.350685e-03

Joint ci ratio: 8.792497e-02	ci left: 1.290956e-03	ci right 1.410342e-03	k: 1984	n:1470000
Cons ci ratio: 9.293426e-04	ci left: 9.232533e-01	ci right 9.241124e-01	k: 1357815	n:1470000
KS ci ratio: 1.483389e-01	ci left: 4.396054e-04	ci right 5.106860e-04	k: 697	n:1470000
ENG   1470000 perm   1133 sec   (1297 perm/sec)   p_kst 4.741497e-04   p_cons 9.236837e-01   p_joint 1.349660e-03

Joint ci ratio: 8.741969e-02	ci left: 1.297433e-03	ci right 1.416694e-03	k: 2007	n:1480000
Cons ci ratio: 9.260681e-04	ci left: 9.232745e-01	ci right 9.241306e-01	k: 1367081	n:1480000
KS ci ratio: 1.474959e-01	ci left: 4.418405e-04	ci right 5.128407e-04	k: 705	n:1480000
ENG   1480000 perm   1147 sec   (1290 perm/sec)   p_kst 4.763514e-04   p_cons 9.237034e-01   p_joint 1.356081e-03

Joint ci ratio: 1.203022e-01	ci left: 6.692358e-04	ci right 7.555429e-04	k: 1060	n:1490000
Cons ci ratio: 9.229158e-04	ci left: 9.232820e-01	ci right 9.241352e-01	k: 1376327	n:1490000
KS ci ratio: 1.473917e-01	ci left: 4.395215e-04	ci right 5.100948e-04	k: 706	n:1490000
ENG   1490000 perm   1160 sec   (1284 perm/sec)   p_kst 4.738255e-04   p_cons 9.237094e-01   p_joint 7.114094e-04

Joint ci ratio: 1.197391e-01	ci left: 6.712407e-04	ci right 7.573726e-04	k: 1070	n:1500000
Cons ci ratio: 9.197999e-04	ci left: 9.232887e-01	ci right 9.241390e-01	k: 1385572	n:1500000
KS ci ratio: 1.467702e-01	ci left: 4.404442e-04	ci right 5.108412e-04	k: 712	n:1500000
ENG   1500000 perm   1173 sec   (1278 perm/sec)   p_kst 4.746667e-04   p_cons 9.237147e-01   p_joint 7.133333e-04

Joint ci ratio: 1.195163e-01	ci left: 6.693651e-04	ci right 7.550851e-04	k: 1074	n:1510000
Cons ci ratio: 9.165990e-04	ci left: 9.233133e-01	ci right 9.241606e-01	k: 1394844	n:1510000
KS ci ratio: 1.463603e-01	ci left: 4.400792e-04	ci right 5.102043e-04	k: 716	n:1510000
ENG   1510000 perm   1187 sec   (1272 perm/sec)   p_kst 4.741722e-04   p_cons 9.237377e-01   p_joint 7.112583e-04

Joint ci ratio: 8.633033e-02	ci left: 1.296114e-03	ci right 1.413694e-03	k: 2058	n:1520000
Cons ci ratio: 9.133031e-04	ci left: 9.233573e-01	ci right 9.242016e-01	k: 1404146	n:1520000
KS ci ratio: 1.459538e-01	ci left: 4.397192e-04	ci right 5.095754e-04	k: 720	n:1520000
ENG   1520000 perm   1201 sec   (1266 perm/sec)   p_kst 4.736842e-04   p_cons 9.237803e-01   p_joint 1.353947e-03

Joint ci ratio: 8.605910e-02	ci left: 1.295956e-03	ci right 1.413134e-03	k: 2071	n:1530000
Cons ci ratio: 9.102029e-04	ci left: 9.233758e-01	ci right 9.242173e-01	k: 1413410	n:1530000
KS ci ratio: 1.453502e-01	ci left: 4.406239e-04	ci right 5.103092e-04	k: 726	n:1530000
ENG   1530000 perm   1215 sec   (1259 perm/sec)   p_kst 4.745098e-04   p_cons 9.237974e-01   p_joint 1.353595e-03

Joint ci ratio: 8.581101e-02	ci left: 1.295166e-03	ci right 1.411917e-03	k: 2083	n:1540000
Cons ci ratio: 9.074059e-04	ci left: 9.233518e-01	ci right 9.241907e-01	k: 1422609	n:1540000
KS ci ratio: 1.449520e-01	ci left: 4.402658e-04	ci right 5.096872e-04	k: 730	n:1540000
ENG   1540000 perm   1230 sec   (1252 perm/sec)   p_kst 4.740260e-04   p_cons 9.237721e-01   p_joint 1.352597e-03

Joint ci ratio: 8.556506e-02	ci left: 1.294386e-03	ci right 1.410716e-03	k: 2095	n:1550000
Cons ci ratio: 9.044232e-04	ci left: 9.233612e-01	ci right 9.241973e-01	k: 1431859	n:1550000
KS ci ratio: 1.444588e-01	ci left: 4.405344e-04	ci right 5.097414e-04	k: 735	n:1550000
ENG   1550000 perm   1244 sec   (1246 perm/sec)   p_kst 4.741935e-04   p_cons 9.237800e-01   p_joint 1.351613e-03

Joint ci ratio: 8.532121e-02	ci left: 1.293616e-03	ci right 1.409530e-03	k: 2107	n:1560000
Cons ci ratio: 9.014163e-04	ci left: 9.233787e-01	ci right 9.242120e-01	k: 1441122	n:1560000
KS ci ratio: 1.439705e-01	ci left: 4.407999e-04	ci right 5.097945e-04	k: 740	n:1560000
ENG   1560000 perm   1258 sec   (1240 perm/sec)   p_kst 4.743590e-04   p_cons 9.237962e-01   p_joint 1.350641e-03

Joint ci ratio: 8.507943e-02	ci left: 1.292857e-03	ci right 1.408358e-03	k: 2119	n:1570000
Cons ci ratio: 8.984757e-04	ci left: 9.233903e-01	ci right 9.242209e-01	k: 1450376	n:1570000
KS ci ratio: 1.435836e-01	ci left: 4.404484e-04	ci right 5.091868e-04	k: 744	n:1570000
ENG   1570000 perm   1272 sec   (1235 perm/sec)   p_kst 4.738854e-04   p_cons 9.238064e-01   p_joint 1.349682e-03

Joint ci ratio: 8.485963e-02	ci left: 1.291489e-03	ci right 1.406554e-03	k: 2130	n:1580000
Cons ci ratio: 8.956684e-04	ci left: 9.233852e-01	ci right 9.242132e-01	k: 1459604	n:1580000
KS ci ratio: 1.435838e-01	ci left: 4.376607e-04	ci right 5.059641e-04	k: 744	n:1580000
ENG   1580000 perm   1286 sec   (1229 perm/sec)   p_kst 4.708861e-04   p_cons 9.238000e-01   p_joint 1.348101e-03

Joint ci ratio: 8.468112e-02	ci left: 1.288906e-03	ci right 1.403488e-03	k: 2139	n:1590000
Cons ci ratio: 8.928953e-04	ci left: 9.233789e-01	ci right 9.242044e-01	k: 1468830	n:1590000
KS ci ratio: 1.431999e-01	ci left: 4.373336e-04	ci right 5.053879e-04	k: 748	n:1590000
ENG   1590000 perm   1300 sec   (1223 perm/sec)   p_kst 4.704403e-04   p_cons 9.237925e-01   p_joint 1.345283e-03

Joint ci ratio: 8.444473e-02	ci left: 1.288192e-03	ci right 1.402375e-03	k: 2151	n:1600000
Cons ci ratio: 8.901951e-04	ci left: 9.233653e-01	ci right 9.241882e-01	k: 1478044	n:1600000
KS ci ratio: 1.427243e-01	ci left: 4.376135e-04	ci right 5.054659e-04	k: 753	n:1600000
ENG   1600000 perm   1315 sec   (1217 perm/sec)   p_kst 4.706250e-04   p_cons 9.237775e-01   p_joint 1.344375e-03

Joint ci ratio: 8.415192e-02	ci left: 1.289311e-03	ci right 1.403178e-03	k: 2166	n:1610000
Cons ci ratio: 8.873862e-04	ci left: 9.233729e-01	ci right 9.241933e-01	k: 1487292	n:1610000
KS ci ratio: 1.422534e-01	ci left: 4.378903e-04	ci right 5.055426e-04	k: 758	n:1610000
ENG   1610000 perm   1329 sec   (1211 perm/sec)   p_kst 4.708075e-04   p_cons 9.237839e-01   p_joint 1.345342e-03

Joint ci ratio: 8.388138e-02	ci left: 1.289813e-03	ci right 1.403340e-03	k: 2180	n:1620000
Cons ci ratio: 8.846231e-04	ci left: 9.233774e-01	ci right 9.241952e-01	k: 1496535	n:1620000
KS ci ratio: 1.415094e-01	ci left: 4.399503e-04	ci right 5.075354e-04	k: 766	n:1620000
ENG   1620000 perm   1345 sec   (1205 perm/sec)   p_kst 4.728395e-04   p_cons 9.237870e-01   p_joint 1.345679e-03

Joint ci ratio: 8.365160e-02	ci left: 1.289108e-03	ci right 1.402247e-03	k: 2192	n:1630000
Cons ci ratio: 8.820931e-04	ci left: 9.233486e-01	ci right 9.241640e-01	k: 1505724	n:1630000
KS ci ratio: 1.411419e-01	ci left: 4.396184e-04	ci right 5.069624e-04	k: 770	n:1630000
ENG   1630000 perm   1359 sec   (1199 perm/sec)   p_kst 4.723926e-04   p_cons 9.237571e-01   p_joint 1.344785e-03

Joint ci ratio: 8.340477e-02	ci left: 1.289009e-03	ci right 1.401789e-03	k: 2205	n:1640000
Cons ci ratio: 8.794247e-04	ci left: 9.233458e-01	ci right 9.241588e-01	k: 1514955	n:1640000
KS ci ratio: 1.408682e-01	ci left: 4.387025e-04	ci right 5.057649e-04	k: 773	n:1640000
ENG   1640000 perm   1374 sec   (1194 perm/sec)   p_kst 4.713415e-04   p_cons 9.237530e-01   p_joint 1.344512e-03

Joint ci ratio: 8.329177e-02	ci left: 1.284757e-03	ci right 1.397005e-03	k: 2211	n:1650000
Cons ci ratio: 8.767577e-04	ci left: 9.233467e-01	ci right 9.241572e-01	k: 1524192	n:1650000
KS ci ratio: 1.406867e-01	ci left: 4.372131e-04	ci right 5.039545e-04	k: 775	n:1650000
ENG   1650000 perm   1388 sec   (1189 perm/sec)   p_kst 4.696970e-04   p_cons 9.237527e-01   p_joint 1.340000e-03

Joint ci ratio: 8.297345e-02	ci left: 1.287045e-03	ci right 1.399043e-03	k: 2228	n:1660000
Cons ci ratio: 8.741185e-04	ci left: 9.233470e-01	ci right 9.241551e-01	k: 1533428	n:1660000
KS ci ratio: 1.403255e-01	ci left: 4.369042e-04	ci right 5.034129e-04	k: 779	n:1660000
ENG   1660000 perm   1403 sec   (1183 perm/sec)   p_kst 4.692771e-04   p_cons 9.237518e-01   p_joint 1.342169e-03

Joint ci ratio: 8.265875e-02	ci left: 1.289307e-03	ci right 1.401056e-03	k: 2245	n:1670000
Cons ci ratio: 8.714179e-04	ci left: 9.233612e-01	ci right 9.241667e-01	k: 1542687	n:1670000
KS ci ratio: 1.395227e-01	ci left: 4.394886e-04	ci right 5.059762e-04	k: 788	n:1670000
ENG   1670000 perm   1417 sec   (1178 perm/sec)   p_kst 4.718563e-04   p_cons 9.237647e-01   p_joint 1.344311e-03

Joint ci ratio: 1.136426e-01	ci left: 6.675114e-04	ci right 7.485115e-04	k: 1188	n:1680000
Cons ci ratio: 8.688192e-04	ci left: 9.233626e-01	ci right 9.241657e-01	k: 1551925	n:1680000
KS ci ratio: 1.390827e-01	ci left: 4.397451e-04	ci right 5.060443e-04	k: 793	n:1680000
ENG   1680000 perm   1432 sec   (1173 perm/sec)   p_kst 4.720238e-04   p_cons 9.237649e-01   p_joint 7.071429e-04

Joint ci ratio: 1.134521e-01	ci left: 6.658612e-04	ci right 7.465165e-04	k: 1192	n:1690000
Cons ci ratio: 8.662363e-04	ci left: 9.233652e-01	ci right 9.241659e-01	k: 1561165	n:1690000
KS ci ratio: 1.387337e-01	ci left: 4.394277e-04	ci right 5.054990e-04	k: 797	n:1690000
ENG   1690000 perm   1447 sec   (1168 perm/sec)   p_kst 4.715976e-04   p_cons 9.237663e-01   p_joint 7.053254e-04

Joint ci ratio: 1.131679e-01	ci left: 6.653738e-04	ci right 7.457547e-04	k: 1198	n:1700000
Cons ci ratio: 8.635465e-04	ci left: 9.233889e-01	ci right 9.241873e-01	k: 1570441	n:1700000
KS ci ratio: 1.385603e-01	ci left: 4.379784e-04	ci right 5.037428e-04	k: 799	n:1700000
ENG   1700000 perm   1462 sec   (1163 perm/sec)   p_kst 4.700000e-04   p_cons 9.237888e-01   p_joint 7.047059e-04

Joint ci ratio: 1.130267e-01	ci left: 6.631874e-04	ci right 7.431976e-04	k: 1201	n:1710000
Cons ci ratio: 8.609209e-04	ci left: 9.234060e-01	ci right 9.242019e-01	k: 1579706	n:1710000
KS ci ratio: 1.383875e-01	ci left: 4.365462e-04	ci right 5.020070e-04	k: 801	n:1710000
ENG   1710000 perm   1477 sec   (1158 perm/sec)   p_kst 4.684211e-04   p_cons 9.238047e-01   p_joint 7.023392e-04

Joint ci ratio: 1.126524e-01	ci left: 6.638516e-04	ci right 7.436590e-04	k: 1209	n:1720000
Cons ci ratio: 8.583615e-04	ci left: 9.234159e-01	ci right 9.242094e-01	k: 1588959	n:1720000
KS ci ratio: 1.378727e-01	ci left: 4.373760e-04	ci right 5.026972e-04	k: 807	n:1720000
ENG   1720000 perm   1492 sec   (1153 perm/sec)   p_kst 4.691860e-04   p_cons 9.238134e-01   p_joint 7.029070e-04

Joint ci ratio: 1.124204e-01	ci left: 6.628231e-04	ci right 7.423319e-04	k: 1214	n:1730000
Cons ci ratio: 8.558354e-04	ci left: 9.234239e-01	ci right 9.242151e-01	k: 1598209	n:1730000
KS ci ratio: 1.374481e-01	ci left: 4.376385e-04	ci right 5.027811e-04	k: 812	n:1730000
ENG   1730000 perm   1507 sec   (1148 perm/sec)   p_kst 4.693642e-04   p_cons 9.238202e-01   p_joint 7.017341e-04

Joint ci ratio: 1.121439e-01	ci left: 6.623652e-04	ci right 7.416108e-04	k: 1220	n:1740000
Cons ci ratio: 8.533802e-04	ci left: 9.234238e-01	ci right 9.242127e-01	k: 1607445	n:1740000
KS ci ratio: 1.370273e-01	ci left: 4.378982e-04	ci right 5.028637e-04	k: 817	n:1740000
ENG   1740000 perm   1523 sec   (1143 perm/sec)   p_kst 4.695402e-04   p_cons 9.238190e-01   p_joint 7.011494e-04

Joint ci ratio: 1.118694e-01	ci left: 6.619128e-04	ci right 7.408976e-04	k: 1226	n:1750000
Cons ci ratio: 8.510013e-04	ci left: 9.234145e-01	ci right 9.242012e-01	k: 1616665	n:1750000
KS ci ratio: 1.368602e-01	ci left: 4.364996e-04	ci right 5.011722e-04	k: 819	n:1750000
ENG   1750000 perm   1538 sec   (1138 perm/sec)   p_kst 4.680000e-04   p_cons 9.238086e-01   p_joint 7.005714e-04

Joint ci ratio: 1.117330e-01	ci left: 6.598087e-04	ci right 7.384402e-04	k: 1229	n:1760000
Cons ci ratio: 8.486251e-04	ci left: 9.234082e-01	ci right 9.241927e-01	k: 1625890	n:1760000
KS ci ratio: 1.367770e-01	ci left: 4.345682e-04	ci right 4.989123e-04	k: 820	n:1760000
ENG   1760000 perm   1554 sec   (1132 perm/sec)   p_kst 4.659091e-04   p_cons 9.238011e-01   p_joint 6.982955e-04

Joint ci ratio: 1.114615e-01	ci left: 6.593762e-04	ci right 7.377526e-04	k: 1235	n:1770000
Cons ci ratio: 8.463195e-04	ci left: 9.233934e-01	ci right 9.241758e-01	k: 1635100	n:1770000
KS ci ratio: 1.365278e-01	ci left: 4.337500e-04	ci right 4.978464e-04	k: 823	n:1770000
ENG   1770000 perm   1570 sec   (1128 perm/sec)   p_kst 4.649718e-04   p_cons 9.237853e-01   p_joint 6.977401e-04

Joint ci ratio: 1.133590e-01	ci left: 6.332852e-04	ci right 7.099275e-04	k: 1194	n:1780000
Cons ci ratio: 8.438576e-04	ci left: 9.234081e-01	ci right 9.241882e-01	k: 1644362	n:1780000
KS ci ratio: 1.361155e-01	ci left: 4.340264e-04	ci right 4.979542e-04	k: 828	n:1780000
ENG   1780000 perm   1586 sec   (1122 perm/sec)   p_kst 4.651685e-04   p_cons 9.237989e-01   p_joint 6.707865e-04

Joint ci ratio: 1.131699e-01	ci left: 6.319186e-04	ci right 7.082594e-04	k: 1198	n:1790000
Cons ci ratio: 8.416173e-04	ci left: 9.233891e-01	ci right 9.241671e-01	k: 1653564	n:1790000
KS ci ratio: 1.359517e-01	ci left: 4.326809e-04	ci right 4.963277e-04	k: 830	n:1790000
ENG   1790000 perm   1602 sec   (1117 perm/sec)   p_kst 4.636872e-04   p_cons 9.237788e-01   p_joint 6.692737e-04

Joint ci ratio: 1.130287e-01	ci left: 6.300275e-04	ci right 7.060384e-04	k: 1201	n:1800000
Cons ci ratio: 8.391198e-04	ci left: 9.234165e-01	ci right 9.241922e-01	k: 1662849	n:1800000
KS ci ratio: 1.357070e-01	ci left: 4.318871e-04	ci right 4.952936e-04	k: 833	n:1800000
ENG   1800000 perm   1618 sec   (1112 perm/sec)   p_kst 4.627778e-04   p_cons 9.238050e-01   p_joint 6.672222e-04

Joint ci ratio: 1.128880e-01	ci left: 6.281572e-04	ci right 7.038420e-04	k: 1204	n:1810000
Cons ci ratio: 8.366970e-04	ci left: 9.234347e-01	ci right 9.242082e-01	k: 1672118	n:1810000
KS ci ratio: 1.356259e-01	ci left: 4.300347e-04	ci right 4.931285e-04	k: 834	n:1810000
ENG   1810000 perm   1634 sec   (1108 perm/sec)   p_kst 4.607735e-04   p_cons 9.238221e-01   p_joint 6.651934e-04

Joint ci ratio: 1.128414e-01	ci left: 6.252397e-04	ci right 7.005397e-04	k: 1205	n:1820000
Cons ci ratio: 8.343307e-04	ci left: 9.234466e-01	ci right 9.242180e-01	k: 1681376	n:1820000
KS ci ratio: 1.355449e-01	ci left: 4.282027e-04	ci right 4.909871e-04	k: 835	n:1820000
ENG   1820000 perm   1650 sec   (1103 perm/sec)   p_kst 4.587912e-04   p_cons 9.238330e-01   p_joint 6.620879e-04

Joint ci ratio: 1.124226e-01	ci left: 6.266026e-04	ci right 7.017681e-04	k: 1214	n:1830000
Cons ci ratio: 8.320394e-04	ci left: 9.234492e-01	ci right 9.242184e-01	k: 1690617	n:1830000
KS ci ratio: 1.349808e-01	ci left: 4.295585e-04	ci right 4.922586e-04	k: 842	n:1830000
ENG   1830000 perm   1666 sec   (1098 perm/sec)   p_kst 4.601093e-04   p_cons 9.238344e-01   p_joint 6.633880e-04

Joint ci ratio: 1.120084e-01	ci left: 6.279512e-04	ci right 7.029827e-04	k: 1223	n:1840000
Cons ci ratio: 8.296835e-04	ci left: 9.234658e-01	ci right 9.242328e-01	k: 1699884	n:1840000
KS ci ratio: 1.344238e-01	ci left: 4.309001e-04	ci right 4.935157e-04	k: 849	n:1840000
ENG   1840000 perm   1683 sec   (1093 perm/sec)   p_kst 4.614130e-04   p_cons 9.238500e-01   p_joint 6.646739e-04

Joint ci ratio: 1.118259e-01	ci left: 6.266585e-04	ci right 7.014055e-04	k: 1227	n:1850000
Cons ci ratio: 8.272616e-04	ci left: 9.234969e-01	ci right 9.242617e-01	k: 1709178	n:1850000
KS ci ratio: 1.341086e-01	ci left: 4.306605e-04	ci right 4.930828e-04	k: 853	n:1850000
ENG   1850000 perm   1699 sec   (1089 perm/sec)   p_kst 4.610811e-04   p_cons 9.238800e-01   p_joint 6.632432e-04

Joint ci ratio: 1.114634e-01	ci left: 6.274703e-04	ci right 7.020556e-04	k: 1235	n:1860000
Cons ci ratio: 8.248355e-04	ci left: 9.235320e-01	ci right 9.242946e-01	k: 1718480	n:1860000
KS ci ratio: 1.336399e-01	ci left: 4.314629e-04	ci right 4.937656e-04	k: 859	n:1860000
ENG   1860000 perm   1716 sec   (1084 perm/sec)   p_kst 4.618280e-04   p_cons 9.239140e-01   p_joint 6.639785e-04

Joint ci ratio: 1.113285e-01	ci left: 6.256744e-04	ci right 6.999503e-04	k: 1238	n:1870000
Cons ci ratio: 8.225023e-04	ci left: 9.235544e-01	ci right 9.243149e-01	k: 1727759	n:1870000
KS ci ratio: 1.334075e-01	ci left: 4.307062e-04	ci right 4.927830e-04	k: 862	n:1870000
ENG   1870000 perm   1732 sec   (1080 perm/sec)   p_kst 4.609626e-04   p_cons 9.239353e-01   p_joint 6.620321e-04

Joint ci ratio: 1.111046e-01	ci left: 6.249320e-04	ci right 6.989607e-04	k: 1243	n:1880000
Cons ci ratio: 8.204154e-04	ci left: 9.235376e-01	ci right 9.242962e-01	k: 1736965	n:1880000
KS ci ratio: 1.332533e-01	ci left: 4.294436e-04	ci right 4.912611e-04	k: 864	n:1880000
ENG   1880000 perm   1748 sec   (1075 perm/sec)   p_kst 4.595745e-04   p_cons 9.239176e-01   p_joint 6.611702e-04

Joint ci ratio: 1.108376e-01	ci left: 6.247119e-04	ci right 6.985252e-04	k: 1249	n:1890000
Cons ci ratio: 8.181842e-04	ci left: 9.235486e-01	ci right 9.243051e-01	k: 1746223	n:1890000
KS ci ratio: 1.328698e-01	ci left: 4.297288e-04	ci right 4.913953e-04	k: 869	n:1890000
ENG   1890000 perm   1765 sec   (1071 perm/sec)   p_kst 4.597884e-04   p_cons 9.239275e-01   p_joint 6.608466e-04

Joint ci ratio: 1.105286e-01	ci left: 6.250062e-04	ci right 6.986349e-04	k: 1256	n:1900000
Cons ci ratio: 8.160015e-04	ci left: 9.235542e-01	ci right 9.243087e-01	k: 1755471	n:1900000
KS ci ratio: 1.324896e-01	ci left: 4.300113e-04	ci right 4.915279e-04	k: 874	n:1900000
ENG   1900000 perm   1782 sec   (1066 perm/sec)   p_kst 4.600000e-04   p_cons 9.239321e-01   p_joint 6.610526e-04

Joint ci ratio: 1.102658e-01	ci left: 6.247885e-04	ci right 6.982052e-04	k: 1262	n:1910000
Cons ci ratio: 8.138727e-04	ci left: 9.235535e-01	ci right 9.243060e-01	k: 1764707	n:1910000
KS ci ratio: 1.321127e-01	ci left: 4.302911e-04	ci right 4.916589e-04	k: 879	n:1910000
ENG   1910000 perm   1799 sec   (1062 perm/sec)   p_kst 4.602094e-04   p_cons 9.239304e-01   p_joint 6.607330e-04

Joint ci ratio: 1.099614e-01	ci left: 6.250798e-04	ci right 6.983149e-04	k: 1269	n:1920000
Cons ci ratio: 8.118085e-04	ci left: 9.235444e-01	ci right 9.242949e-01	k: 1773927	n:1920000
KS ci ratio: 1.318135e-01	ci left: 4.300646e-04	ci right 4.912502e-04	k: 883	n:1920000
ENG   1920000 perm   1816 sec   (1057 perm/sec)   p_kst 4.598958e-04   p_cons 9.239203e-01   p_joint 6.609375e-04

Joint ci ratio: 1.094882e-01	ci left: 6.273842e-04	ci right 7.005525e-04	k: 1280	n:1930000
Cons ci ratio: 8.097151e-04	ci left: 9.235432e-01	ci right 9.242918e-01	k: 1783162	n:1930000
KS ci ratio: 1.313684e-01	ci left: 4.308428e-04	ci right 4.919160e-04	k: 889	n:1930000
ENG   1930000 perm   1833 sec   (1053 perm/sec)   p_kst 4.606218e-04   p_cons 9.239181e-01   p_joint 6.632124e-04

Joint ci ratio: 1.093603e-01	ci left: 6.256543e-04	ci right 6.985301e-04	k: 1283	n:1940000
Cons ci ratio: 8.076172e-04	ci left: 9.235456e-01	ci right 9.242923e-01	k: 1792404	n:1940000
KS ci ratio: 1.311476e-01	ci left: 4.301175e-04	ci right 4.909775e-04	k: 892	n:1940000
ENG   1940000 perm   1850 sec   (1049 perm/sec)   p_kst 4.597938e-04   p_cons 9.239196e-01   p_joint 6.613402e-04

Joint ci ratio: 1.091480e-01	ci left: 6.249398e-04	ci right 6.975820e-04	k: 1288	n:1950000
Cons ci ratio: 8.054297e-04	ci left: 9.235665e-01	ci right 9.243112e-01	k: 1801682	n:1950000
KS ci ratio: 1.309279e-01	ci left: 4.293998e-04	ci right 4.900485e-04	k: 895	n:1950000
ENG   1950000 perm   1867 sec   (1045 perm/sec)   p_kst 4.589744e-04   p_cons 9.239395e-01   p_joint 6.605128e-04

Joint ci ratio: 1.090213e-01	ci left: 6.232402e-04	ci right 6.955953e-04	k: 1291	n:1960000
Cons ci ratio: 8.033852e-04	ci left: 9.235652e-01	ci right 9.243080e-01	k: 1810917	n:1960000
KS ci ratio: 1.307821e-01	ci left: 4.281960e-04	ci right 4.886021e-04	k: 897	n:1960000
ENG   1960000 perm   1885 sec   (1040 perm/sec)   p_kst 4.576531e-04   p_cons 9.239372e-01   p_joint 6.586735e-04

Joint ci ratio: 1.086853e-01	ci left: 6.240269e-04	ci right 6.962358e-04	k: 1299	n:1970000
Cons ci ratio: 8.013157e-04	ci left: 9.235711e-01	ci right 9.243119e-01	k: 1820166	n:1970000
KS ci ratio: 1.302033e-01	ci left: 4.299508e-04	ci right 4.903152e-04	k: 905	n:1970000
ENG   1970000 perm   1902 sec   (1036 perm/sec)   p_kst 4.593909e-04   p_cons 9.239421e-01   p_joint 6.593909e-04

Joint ci ratio: 1.083939e-01	ci left: 6.243146e-04	ci right 6.963508e-04	k: 1306	n:1980000
Cons ci ratio: 7.991903e-04	ci left: 9.235895e-01	ci right 9.243284e-01	k: 1829440	n:1980000
KS ci ratio: 1.299168e-01	ci left: 4.297338e-04	ci right 4.899248e-04	k: 909	n:1980000
ENG   1980000 perm   1919 sec   (1032 perm/sec)   p_kst 4.590909e-04   p_cons 9.239596e-01   p_joint 6.595960e-04

Joint ci ratio: 1.080225e-01	ci left: 6.255776e-04	ci right 6.974965e-04	k: 1315	n:1990000
Cons ci ratio: 7.971415e-04	ci left: 9.235972e-01	ci right 9.243342e-01	k: 1838693	n:1990000
KS ci ratio: 1.294199e-01	ci left: 4.309778e-04	ci right 4.910945e-04	k: 916	n:1990000
ENG   1990000 perm   1936 sec   (1028 perm/sec)   p_kst 4.603015e-04   p_cons 9.239663e-01   p_joint 6.608040e-04

Joint ci ratio: 1.078180e-01	ci left: 6.248822e-04	ci right 6.965764e-04	k: 1320	n:2000000
Cons ci ratio: 7.951084e-04	ci left: 9.236048e-01	ci right 9.243400e-01	k: 1847946	n:2000000
KS ci ratio: 1.291386e-01	ci left: 4.307582e-04	ci right 4.907036e-04	k: 920	n:2000000
ENG   2000000 perm   1953 sec   (1024 perm/sec)   p_kst 4.600000e-04   p_cons 9.239730e-01   p_joint 6.600000e-04

Joint ci ratio: 1.074121e-01	ci left: 6.266146e-04	ci right 6.982198e-04	k: 1330	n:2010000
Cons ci ratio: 7.930964e-04	ci left: 9.236114e-01	ci right 9.243446e-01	k: 1857197	n:2010000
KS ci ratio: 1.285813e-01	ci left: 4.324670e-04	ci right 4.923706e-04	k: 928	n:2010000
ENG   2010000 perm   1970 sec   (1020 perm/sec)   p_kst 4.616915e-04   p_cons 9.239786e-01   p_joint 6.616915e-04

Joint ci ratio: 1.072109e-01	ci left: 6.259214e-04	ci right 6.973050e-04	k: 1335	n:2020000
Cons ci ratio: 7.910187e-04	ci left: 9.236322e-01	ci right 9.243636e-01	k: 1866477	n:2020000
KS ci ratio: 1.283742e-01	ci left: 4.317635e-04	ci right 4.914660e-04	k: 931	n:2020000
ENG   2020000 perm   1988 sec   (1016 perm/sec)   p_kst 4.608911e-04   p_cons 9.239985e-01   p_joint 6.608911e-04

Joint ci ratio: 1.070509e-01	ci left: 6.247556e-04	ci right 6.958932e-04	k: 1339	n:2030000
Cons ci ratio: 7.892395e-04	ci left: 9.236025e-01	ci right 9.243322e-01	k: 1875655	n:2030000
KS ci ratio: 1.281681e-01	ci left: 4.310670e-04	ci right 4.905702e-04	k: 934	n:2030000
ENG   2030000 perm   2006 sec   (1012 perm/sec)   p_kst 4.600985e-04   p_cons 9.239680e-01   p_joint 6.596059e-04

Joint ci ratio: 1.067723e-01	ci left: 6.250327e-04	ci right 6.960051e-04	k: 1346	n:2040000
Cons ci ratio: 7.872744e-04	ci left: 9.236085e-01	ci right 9.243364e-01	k: 1884905	n:2040000
KS ci ratio: 1.277588e-01	ci left: 4.318009e-04	ci right 4.912008e-04	k: 940	n:2040000
ENG   2040000 perm   2024 sec   (1008 perm/sec)   p_kst 4.607843e-04   p_cons 9.239730e-01   p_joint 6.598039e-04

Joint ci ratio: 1.066537e-01	ci left: 6.234081e-04	ci right 6.941124e-04	k: 1349	n:2050000
Cons ci ratio: 7.854602e-04	ci left: 9.235900e-01	ci right 9.243162e-01	k: 1894105	n:2050000
KS ci ratio: 1.275557e-01	ci left: 4.311112e-04	ci right 4.903148e-04	k: 943	n:2050000
ENG   2050000 perm   2041 sec   (1004 perm/sec)   p_kst 4.600000e-04   p_cons 9.239537e-01   p_joint 6.580488e-04

Joint ci ratio: 1.063391e-01	ci left: 6.241619e-04	ci right 6.947298e-04	k: 1357	n:2060000
Cons ci ratio: 7.834825e-04	ci left: 9.236032e-01	ci right 9.243276e-01	k: 1903370	n:2060000
KS ci ratio: 1.271522e-01	ci left: 4.318383e-04	ci right 4.909400e-04	k: 949	n:2060000
ENG   2060000 perm   2059 sec   (1001 perm/sec)   p_kst 4.606796e-04   p_cons 9.239660e-01   p_joint 6.587379e-04

Joint ci ratio: 1.060272e-01	ci left: 6.249088e-04	ci right 6.953409e-04	k: 1365	n:2070000
Cons ci ratio: 7.815707e-04	ci left: 9.236072e-01	ci right 9.243298e-01	k: 1912616	n:2070000
KS ci ratio: 1.268189e-01	ci left: 4.320909e-04	ci right 4.910604e-04	k: 954	n:2070000
ENG   2070000 perm   2077 sec   (997 perm/sec)   p_kst 4.608696e-04   p_cons 9.239691e-01   p_joint 6.594203e-04

Joint ci ratio: 1.035174e-01	ci left: 6.532725e-04	ci right 7.250526e-04	k: 1432	n:2080000
Cons ci ratio: 7.796247e-04	ci left: 9.236198e-01	ci right 9.243406e-01	k: 1921880	n:2080000
KS ci ratio: 1.262910e-01	ci left: 4.337379e-04	ci right 4.926674e-04	k: 962	n:2080000
ENG   2080000 perm   2095 sec   (993 perm/sec)   p_kst 4.625000e-04   p_cons 9.239808e-01   p_joint 6.884615e-04

Joint ci ratio: 1.033014e-01	ci left: 6.529433e-04	ci right 7.245285e-04	k: 1438	n:2090000
Cons ci ratio: 7.777728e-04	ci left: 9.236178e-01	ci right 9.243370e-01	k: 1931114	n:2090000
KS ci ratio: 1.260295e-01	ci left: 4.335161e-04	ci right 4.922844e-04	k: 966	n:2090000
ENG   2090000 perm   2113 sec   (989 perm/sec)   p_kst 4.622010e-04   p_cons 9.239780e-01   p_joint 6.880383e-04

Joint ci ratio: 1.032298e-01	ci left: 6.507618e-04	ci right 7.220553e-04	k: 1440	n:2100000
Cons ci ratio: 7.758997e-04	ci left: 9.236222e-01	ci right 9.243395e-01	k: 1940361	n:2100000
KS ci ratio: 1.259645e-01	ci left: 4.319129e-04	ci right 4.904314e-04	k: 967	n:2100000
ENG   2100000 perm   2132 sec   (985 perm/sec)   p_kst 4.604762e-04   p_cons 9.239814e-01   p_joint 6.857143e-04

Joint ci ratio: 1.028733e-01	ci left: 6.522948e-04	ci right 7.234947e-04	k: 1450	n:2110000
Cons ci ratio: 7.741028e-04	ci left: 9.236150e-01	ci right 9.243307e-01	k: 1949584	n:2110000
KS ci ratio: 1.256404e-01	ci left: 4.321610e-04	ci right 4.905513e-04	k: 972	n:2110000
ENG   2110000 perm   2150 sec   (981 perm/sec)   p_kst 4.606635e-04   p_cons 9.239735e-01   p_joint 6.872038e-04

Joint ci ratio: 1.025206e-01	ci left: 6.538138e-04	ci right 7.249201e-04	k: 1460	n:2120000
Cons ci ratio: 7.723728e-04	ci left: 9.235980e-01	ci right 9.243121e-01	k: 1958786	n:2120000
KS ci ratio: 1.251270e-01	ci left: 4.337778e-04	ci right 4.921292e-04	k: 980	n:2120000
ENG   2120000 perm   2169 sec   (977 perm/sec)   p_kst 4.622642e-04   p_cons 9.239557e-01   p_joint 6.886792e-04

Joint ci ratio: 1.022759e-01	ci left: 6.539465e-04	ci right 7.248872e-04	k: 1467	n:2130000
Cons ci ratio: 7.705693e-04	ci left: 9.235967e-01	ci right 9.243092e-01	k: 1968021	n:2130000
KS ci ratio: 1.247460e-01	ci left: 4.344701e-04	ci right 4.927236e-04	k: 986	n:2130000
ENG   2130000 perm   2187 sec   (974 perm/sec)   p_kst 4.629108e-04   p_cons 9.239535e-01   p_joint 6.887324e-04

Joint ci ratio: 1.018259e-01	ci left: 6.568105e-04	ci right 7.277296e-04	k: 1480	n:2140000
Cons ci ratio: 7.687093e-04	ci left: 9.236081e-01	ci right 9.243188e-01	k: 1977283	n:2140000
KS ci ratio: 1.241810e-01	ci left: 4.365146e-04	ci right 4.947576e-04	k: 995	n:2140000
ENG   2140000 perm   2206 sec   (970 perm/sec)   p_kst 4.649533e-04   p_cons 9.239640e-01   p_joint 6.915888e-04

Joint ci ratio: 1.014837e-01	ci left: 6.582885e-04	ci right 7.291141e-04	k: 1490	n:2150000
Cons ci ratio: 7.670024e-04	ci left: 9.235937e-01	ci right 9.243028e-01	k: 1986490	n:2150000
KS ci ratio: 1.235621e-01	ci left: 4.389914e-04	ci right 4.972516e-04	k: 1005	n:2150000
ENG   2150000 perm   2224 sec   (967 perm/sec)   p_kst 4.674419e-04   p_cons 9.239488e-01   p_joint 6.930233e-04

Joint ci ratio: 1.013480e-01	ci left: 6.570457e-04	ci right 7.276374e-04	k: 1494	n:2160000
Cons ci ratio: 7.652815e-04	ci left: 9.235841e-01	ci right 9.242916e-01	k: 1995707	n:2160000
KS ci ratio: 1.234396e-01	ci left: 4.378563e-04	ci right 4.959040e-04	k: 1007	n:2160000
ENG   2160000 perm   2242 sec   (963 perm/sec)   p_kst 4.662037e-04   p_cons 9.239384e-01   p_joint 6.916667e-04

Joint ci ratio: 1.009771e-01	ci left: 6.589587e-04	ci right 7.294816e-04	k: 1505	n:2170000
Cons ci ratio: 7.634696e-04	ci left: 9.235935e-01	ci right 9.242994e-01	k: 2004965	n:2170000
KS ci ratio: 1.230131e-01	ci left: 4.389649e-04	ci right 4.969439e-04	k: 1014	n:2170000
ENG   2170000 perm   2261 sec   (960 perm/sec)   p_kst 4.672811e-04   p_cons 9.239470e-01   p_joint 6.935484e-04

Joint ci ratio: 1.007432e-01	ci left: 6.590660e-04	ci right 7.294273e-04	k: 1512	n:2180000
Cons ci ratio: 7.616605e-04	ci left: 9.236047e-01	ci right 9.243089e-01	k: 2014227	n:2180000
KS ci ratio: 1.226511e-01	ci left: 4.396191e-04	ci right 4.975012e-04	k: 1020	n:2180000
ENG   2180000 perm   2279 sec   (956 perm/sec)   p_kst 4.678899e-04   p_cons 9.239573e-01   p_joint 6.935780e-04

Joint ci ratio: 1.025569e-01	ci left: 6.324704e-04	ci right 7.012812e-04	k: 1459	n:2190000
Cons ci ratio: 7.598913e-04	ci left: 9.236107e-01	ci right 9.243133e-01	k: 2023478	n:2190000
KS ci ratio: 1.223518e-01	ci left: 4.398248e-04	ci right 4.975825e-04	k: 1025	n:2190000
ENG   2190000 perm   2298 sec   (953 perm/sec)   p_kst 4.680365e-04   p_cons 9.239626e-01   p_joint 6.662100e-04

Joint ci ratio: 1.022074e-01	ci left: 6.340246e-04	ci right 7.027553e-04	k: 1469	n:2200000
Cons ci ratio: 7.581933e-04	ci left: 9.236058e-01	ci right 9.243067e-01	k: 2032705	n:2200000
KS ci ratio: 1.219365e-01	ci left: 4.409102e-04	ci right 4.985997e-04	k: 1032	n:2200000
ENG   2200000 perm   2317 sec   (950 perm/sec)   p_kst 4.690909e-04   p_cons 9.239568e-01   p_joint 6.677273e-04

Joint ci ratio: 9.992097e-02	ci left: 6.611478e-04	ci right 7.311215e-04	k: 1537	n:2210000
Cons ci ratio: 7.564384e-04	ci left: 9.236136e-01	ci right 9.243129e-01	k: 2041960	n:2210000
KS ci ratio: 1.215254e-01	ci left: 4.419862e-04	ci right 4.996074e-04	k: 1039	n:2210000
ENG   2210000 perm   2336 sec   (946 perm/sec)   p_kst 4.701357e-04   p_cons 9.239638e-01   p_joint 6.954751e-04

Joint ci ratio: 9.985617e-02	ci left: 6.590480e-04	ci right 7.287516e-04	k: 1539	n:2220000
Cons ci ratio: 7.547899e-04	ci left: 9.236037e-01	ci right 9.243015e-01	k: 2051176	n:2220000
KS ci ratio: 1.214671e-01	ci left: 4.404320e-04	ci right 4.978211e-04	k: 1040	n:2220000
ENG   2220000 perm   2355 sec   (943 perm/sec)   p_kst 4.684685e-04   p_cons 9.239532e-01   p_joint 6.932432e-04

Joint ci ratio: 9.956561e-02	ci left: 6.600279e-04	ci right 7.296201e-04	k: 1548	n:2230000
Cons ci ratio: 7.531474e-04	ci left: 9.235948e-01	ci right 9.242911e-01	k: 2060394	n:2230000
KS ci ratio: 1.210607e-01	ci left: 4.415008e-04	ci right 4.988229e-04	k: 1047	n:2230000
ENG   2230000 perm   2374 sec   (939 perm/sec)   p_kst 4.695067e-04   p_cons 9.239435e-01   p_joint 6.941704e-04

Joint ci ratio: 9.930947e-02	ci left: 6.605640e-04	ci right 7.300231e-04	k: 1556	n:2240000
Cons ci ratio: 7.515156e-04	ci left: 9.235860e-01	ci right 9.242808e-01	k: 2069612	n:2240000
KS ci ratio: 1.207156e-01	ci left: 4.421273e-04	ci right 4.993555e-04	k: 1053	n:2240000
ENG   2240000 perm   2393 sec   (936 perm/sec)   p_kst 4.700893e-04   p_cons 9.239339e-01   p_joint 6.946429e-04

Joint ci ratio: 9.915044e-02	ci left: 6.597952e-04	ci right 7.290559e-04	k: 1561	n:2250000
Cons ci ratio: 7.498516e-04	ci left: 9.235853e-01	ci right 9.242785e-01	k: 2078848	n:2250000
KS ci ratio: 1.204872e-01	ci left: 4.418865e-04	ci right 4.989675e-04	k: 1057	n:2250000
ENG   2250000 perm   2413 sec   (933 perm/sec)   p_kst 4.697778e-04   p_cons 9.239324e-01   p_joint 6.937778e-04

Joint ci ratio: 9.892902e-02	ci left: 6.598964e-04	ci right 7.290040e-04	k: 1568	n:2260000
Cons ci ratio: 7.922873e-04	ci left: 9.151184e-01	ci right 9.158442e-01	k: 2068989	n:2260000
KS ci ratio: 1.203168e-01	ci left: 4.412187e-04	ci right 4.981271e-04	k: 1060	n:2260000
ENG   2260000 perm   2433 sec   (929 perm/sec)   p_kst 4.690265e-04   p_cons 9.154819e-01   p_joint 6.938053e-04

Joint ci ratio: 9.877180e-02	ci left: 6.591375e-04	ci right 7.280497e-04	k: 1573	n:2270000
Cons ci ratio: 7.904836e-04	ci left: 9.151304e-01	ci right 9.158545e-01	k: 2078169	n:2270000
KS ci ratio: 1.201471e-01	ci left: 4.405568e-04	ci right 4.972941e-04	k: 1063	n:2270000
ENG   2270000 perm   2452 sec   (926 perm/sec)   p_kst 4.682819e-04   p_cons 9.154930e-01   p_joint 6.929515e-04

Joint ci ratio: 9.870922e-02	ci left: 6.571021e-04	ci right 7.257553e-04	k: 1575	n:2280000
Cons ci ratio: 7.887055e-04	ci left: 9.151395e-01	ci right 9.158620e-01	k: 2087343	n:2280000
KS ci ratio: 1.201472e-01	ci left: 4.386245e-04	ci right 4.951130e-04	k: 1063	n:2280000
ENG   2280000 perm   2472 sec   (922 perm/sec)   p_kst 4.662281e-04   p_cons 9.155013e-01   p_joint 6.907895e-04

Joint ci ratio: 9.842853e-02	ci left: 6.580659e-04	ci right 7.266131e-04	k: 1584	n:2290000
Cons ci ratio: 7.870238e-04	ci left: 9.151320e-01	ci right 9.158530e-01	k: 2096479	n:2290000
KS ci ratio: 1.198659e-01	ci left: 4.388270e-04	ci right 4.951998e-04	k: 1068	n:2290000
ENG   2290000 perm   2491 sec   (919 perm/sec)   p_kst 4.663755e-04   p_cons 9.154930e-01   p_joint 6.917031e-04

Joint ci ratio: 9.821189e-02	ci left: 6.581734e-04	ci right 7.265722e-04	k: 1591	n:2300000
Cons ci ratio: 7.853152e-04	ci left: 9.151320e-01	ci right 9.158513e-01	k: 2105632	n:2300000
KS ci ratio: 1.195309e-01	ci left: 4.394497e-04	ci right 4.957335e-04	k: 1074	n:2300000
ENG   2300000 perm   2511 sec   (916 perm/sec)   p_kst 4.669565e-04   p_cons 9.154922e-01   p_joint 6.917391e-04

Joint ci ratio: 9.793541e-02	ci left: 6.591247e-04	ci right 7.274185e-04	k: 1600	n:2310000
Cons ci ratio: 7.836923e-04	ci left: 9.151172e-01	ci right 9.158350e-01	k: 2114751	n:2310000
KS ci ratio: 1.192539e-01	ci left: 4.396471e-04	ci right 4.958166e-04	k: 1079	n:2310000
ENG   2310000 perm   2531 sec   (913 perm/sec)   p_kst 4.670996e-04   p_cons 9.154766e-01   p_joint 6.926407e-04

Joint ci ratio: 9.766125e-02	ci left: 6.600681e-04	ci right 7.282572e-04	k: 1609	n:2320000
Cons ci ratio: 7.819966e-04	ci left: 9.151189e-01	ci right 9.158352e-01	k: 2123908	n:2320000
KS ci ratio: 1.189240e-01	ci left: 4.402613e-04	ci right 4.963427e-04	k: 1085	n:2320000
ENG   2320000 perm   2551 sec   (909 perm/sec)   p_kst 4.676724e-04   p_cons 9.154776e-01   p_joint 6.935345e-04

Joint ci ratio: 9.927891e-02	ci left: 6.354667e-04	ci right 7.022651e-04	k: 1557	n:2330000
Cons ci ratio: 7.803638e-04	ci left: 9.151103e-01	ci right 9.158251e-01	k: 2133041	n:2330000
KS ci ratio: 1.186511e-01	ci left: 4.404539e-04	ci right 4.964221e-04	k: 1090	n:2330000
ENG   2330000 perm   2572 sec   (906 perm/sec)   p_kst 4.678112e-04   p_cons 9.154682e-01   p_joint 6.682403e-04

Joint ci ratio: 9.717952e-02	ci left: 6.610975e-04	ci right 7.290369e-04	k: 1625	n:2340000
Cons ci ratio: 7.787068e-04	ci left: 9.151087e-01	ci right 9.158219e-01	k: 2142190	n:2340000
KS ci ratio: 1.185426e-01	ci left: 4.394010e-04	ci right 4.951807e-04	k: 1092	n:2340000
ENG   2340000 perm   2592 sec   (903 perm/sec)   p_kst 4.666667e-04   p_cons 9.154658e-01   p_joint 6.944444e-04

Joint ci ratio: 9.694132e-02	ci left: 6.616060e-04	ci right 7.294215e-04	k: 1633	n:2350000
Cons ci ratio: 7.769407e-04	ci left: 9.151309e-01	ci right 9.158426e-01	k: 2151395	n:2350000
KS ci ratio: 1.181648e-01	ci left: 4.404217e-04	ci right 4.961404e-04	k: 1099	n:2350000
ENG   2350000 perm   2612 sec   (900 perm/sec)   p_kst 4.676596e-04   p_cons 9.154872e-01   p_joint 6.948936e-04

Joint ci ratio: 9.667540e-02	ci left: 6.625238e-04	ci right 7.302365e-04	k: 1642	n:2360000
Cons ci ratio: 7.753244e-04	ci left: 9.151253e-01	ci right 9.158355e-01	k: 2160535	n:2360000
KS ci ratio: 1.177905e-01	ci left: 4.414341e-04	ci right 4.970917e-04	k: 1106	n:2360000
ENG   2360000 perm   2633 sec   (896 perm/sec)   p_kst 4.686441e-04   p_cons 9.154809e-01   p_joint 6.957627e-04

Joint ci ratio: 9.644087e-02	ci left: 6.630224e-04	ci right 7.306124e-04	k: 1650	n:2370000
Cons ci ratio: 7.737815e-04	ci left: 9.151071e-01	ci right 9.158159e-01	k: 2169645	n:2370000
KS ci ratio: 1.173671e-01	ci left: 4.428478e-04	ci right 4.984690e-04	k: 1114	n:2370000
ENG   2370000 perm   2654 sec   (893 perm/sec)   p_kst 4.700422e-04   p_cons 9.154620e-01   p_joint 6.962025e-04

Joint ci ratio: 9.629521e-02	ci left: 6.622867e-04	ci right 7.296940e-04	k: 1655	n:2380000
Cons ci ratio: 7.721157e-04	ci left: 9.151156e-01	ci right 9.158229e-01	k: 2178818	n:2380000
KS ci ratio: 1.172096e-01	ci left: 4.422106e-04	ci right 4.976721e-04	k: 1117	n:2380000
ENG   2380000 perm   2675 sec   (890 perm/sec)   p_kst 4.693277e-04   p_cons 9.154697e-01   p_joint 6.953782e-04

Joint ci ratio: 9.603456e-02	ci left: 6.631908e-04	ci right 7.304971e-04	k: 1664	n:2390000
Cons ci ratio: 7.704397e-04	ci left: 9.151282e-01	ci right 9.158340e-01	k: 2188001	n:2390000
KS ci ratio: 1.168963e-01	ci left: 4.427973e-04	ci right 4.981737e-04	k: 1123	n:2390000
ENG   2390000 perm   2696 sec   (887 perm/sec)   p_kst 4.698745e-04   p_cons 9.154816e-01   p_joint 6.962343e-04

Joint ci ratio: 9.571881e-02	ci left: 6.649010e-04	ci right 7.321466e-04	k: 1675	n:2400000
Cons ci ratio: 7.688988e-04	ci left: 9.151157e-01	ci right 9.158200e-01	k: 2197124	n:2400000
KS ci ratio: 1.163283e-01	ci left: 4.454020e-04	ci right 5.008149e-04	k: 1134	n:2400000
ENG   2400000 perm   2717 sec   (883 perm/sec)   p_kst 4.725000e-04   p_cons 9.154683e-01   p_joint 6.979167e-04

Joint ci ratio: 9.546280e-02	ci left: 6.657872e-04	ci right 7.329323e-04	k: 1684	n:2410000
Cons ci ratio: 7.672951e-04	ci left: 9.151178e-01	ci right 9.158206e-01	k: 2206282	n:2410000
KS ci ratio: 1.159712e-01	ci left: 4.463741e-04	ci right 5.017257e-04	k: 1141	n:2410000
ENG   2410000 perm   2737 sec   (880 perm/sec)   p_kst 4.734440e-04   p_cons 9.154697e-01   p_joint 6.987552e-04

Joint ci ratio: 9.529330e-02	ci left: 6.654562e-04	ci right 7.324421e-04	k: 1690	n:2420000
Cons ci ratio: 7.657198e-04	ci left: 9.151162e-01	ci right 9.158176e-01	k: 2215431	n:2420000
KS ci ratio: 1.157686e-01	ci left: 4.461345e-04	ci right 5.013532e-04	k: 1145	n:2420000
ENG   2420000 perm   2758 sec   (877 perm/sec)   p_kst 4.731405e-04   p_cons 9.154674e-01   p_joint 6.983471e-04

Joint ci ratio: 9.512471e-02	ci left: 6.651281e-04	ci right 7.319559e-04	k: 1696	n:2430000
Cons ci ratio: 7.641359e-04	ci left: 9.151183e-01	ci right 9.158182e-01	k: 2224589	n:2430000
KS ci ratio: 1.155671e-01	ci left: 4.458971e-04	ci right 5.009837e-04	k: 1149	n:2430000
ENG   2430000 perm   2780 sec   (874 perm/sec)   p_kst 4.728395e-04   p_cons 9.154687e-01   p_joint 6.979424e-04

Joint ci ratio: 9.484561e-02	ci left: 6.664032e-04	ci right 7.331517e-04	k: 1706	n:2440000
Cons ci ratio: 7.624930e-04	ci left: 9.151343e-01	ci right 9.158327e-01	k: 2233781	n:2440000
KS ci ratio: 1.151174e-01	ci left: 4.476517e-04	ci right 5.027254e-04	k: 1158	n:2440000
ENG   2440000 perm   2801 sec   (871 perm/sec)   p_kst 4.745902e-04   p_cons 9.154840e-01   p_joint 6.991803e-04

Joint ci ratio: 9.470705e-02	ci left: 6.656756e-04	ci right 7.322484e-04	k: 1711	n:2450000
Cons ci ratio: 7.609390e-04	ci left: 9.151343e-01	ci right 9.158313e-01	k: 2242934	n:2450000
KS ci ratio: 1.149193e-01	ci left: 4.474103e-04	ci right 5.023531e-04	k: 1162	n:2450000
ENG   2450000 perm   2822 sec   (868 perm/sec)   p_kst 4.742857e-04   p_cons 9.154833e-01   p_joint 6.983673e-04

Joint ci ratio: 9.454155e-02	ci left: 6.653509e-04	ci right 7.317685e-04	k: 1717	n:2460000
Cons ci ratio: 7.594503e-04	ci left: 9.151228e-01	ci right 9.158185e-01	k: 2252059	n:2460000
KS ci ratio: 1.147222e-01	ci left: 4.471708e-04	ci right 5.019837e-04	k: 1166	n:2460000
ENG   2460000 perm   2844 sec   (865 perm/sec)   p_kst 4.739837e-04   p_cons 9.154711e-01   p_joint 6.979675e-04

Joint ci ratio: 9.440431e-02	ci left: 6.646336e-04	ci right 7.308780e-04	k: 1722	n:2470000
Cons ci ratio: 7.579386e-04	ci left: 9.151180e-01	ci right 9.158122e-01	k: 2261200	n:2470000
KS ci ratio: 1.144772e-01	ci left: 4.473267e-04	ci right 5.020336e-04	k: 1171	n:2470000
ENG   2470000 perm   2865 sec   (862 perm/sec)   p_kst 4.740891e-04   p_cons 9.154656e-01   p_joint 6.971660e-04

Joint ci ratio: 9.424038e-02	ci left: 6.643159e-04	ci right 7.304074e-04	k: 1728	n:2480000
Cons ci ratio: 7.563925e-04	ci left: 9.151220e-01	ci right 9.158149e-01	k: 2270363	n:2480000
KS ci ratio: 1.143310e-01	ci left: 4.466980e-04	ci right 5.012536e-04	k: 1174	n:2480000
ENG   2480000 perm   2887 sec   (859 perm/sec)   p_kst 4.733871e-04   p_cons 9.154690e-01   p_joint 6.967742e-04

Joint ci ratio: 9.413162e-02	ci left: 6.632166e-04	ci right 7.291183e-04	k: 1732	n:2490000
Cons ci ratio: 7.548500e-04	ci left: 9.151273e-01	ci right 9.158187e-01	k: 2279529	n:2490000
KS ci ratio: 1.142339e-01	ci left: 4.456843e-04	ci right 5.000667e-04	k: 1176	n:2490000
ENG   2490000 perm   2909 sec   (856 perm/sec)   p_kst 4.722892e-04   p_cons 9.154735e-01   p_joint 6.955823e-04

Joint ci ratio: 9.396910e-02	ci left: 6.629072e-04	ci right 7.286582e-04	k: 1738	n:2500000
Cons ci ratio: 7.532370e-04	ci left: 9.151489e-01	ci right 9.158389e-01	k: 2288736	n:2500000
KS ci ratio: 1.140887e-01	ci left: 4.450673e-04	ci right 4.993007e-04	k: 1179	n:2500000
ENG   2500000 perm   2931 sec   (853 perm/sec)   p_kst 4.716000e-04   p_cons 9.154944e-01   p_joint 6.952000e-04

Joint ci ratio: 9.380743e-02	ci left: 6.626005e-04	ci right 7.282018e-04	k: 1744	n:2510000
Cons ci ratio: 7.517465e-04	ci left: 9.151473e-01	ci right 9.158359e-01	k: 2297885	n:2510000
KS ci ratio: 1.138958e-01	ci left: 4.448423e-04	ci right 4.989505e-04	k: 1183	n:2510000
ENG   2510000 perm   2952 sec   (850 perm/sec)   p_kst 4.713147e-04   p_cons 9.154920e-01   p_joint 6.948207e-04

Joint ci ratio: 9.364659e-02	ci left: 6.622963e-04	ci right 7.277488e-04	k: 1750	n:2520000
Cons ci ratio: 7.502014e-04	ci left: 9.151587e-01	ci right 9.158459e-01	k: 2307067	n:2520000
KS ci ratio: 1.136561e-01	ci left: 4.450047e-04	ci right 4.990111e-04	k: 1188	n:2520000
ENG   2520000 perm   2974 sec   (847 perm/sec)   p_kst 4.714286e-04   p_cons 9.155028e-01   p_joint 6.944444e-04

Joint ci ratio: 9.351321e-02	ci left: 6.616085e-04	ci right 7.268949e-04	k: 1755	n:2530000
Cons ci ratio: 7.486657e-04	ci left: 9.151701e-01	ci right 9.158559e-01	k: 2316249	n:2530000
KS ci ratio: 1.134654e-01	ci left: 4.447819e-04	ci right 4.986647e-04	k: 1192	n:2530000
ENG   2530000 perm   2996 sec   (844 perm/sec)   p_kst 4.711462e-04   p_cons 9.155134e-01   p_joint 6.936759e-04

Joint ci ratio: 9.332738e-02	ci left: 6.616953e-04	ci right 7.268534e-04	k: 1762	n:2540000
Cons ci ratio: 7.472116e-04	ci left: 9.151664e-01	ci right 9.158508e-01	k: 2325393	n:2540000
KS ci ratio: 1.132756e-01	ci left: 4.445609e-04	ci right 4.983209e-04	k: 1196	n:2540000
ENG   2540000 perm   3018 sec   (842 perm/sec)   p_kst 4.708661e-04   p_cons 9.155091e-01   p_joint 6.937008e-04

Joint ci ratio: 9.309003e-02	ci left: 6.625475e-04	ci right 7.276146e-04	k: 1771	n:2550000
Cons ci ratio: 7.457887e-04	ci left: 9.151580e-01	ci right 9.158411e-01	k: 2334525	n:2550000
KS ci ratio: 1.128989e-01	ci left: 4.458661e-04	ci right 4.995926e-04	k: 1204	n:2550000
ENG   2550000 perm   3040 sec   (839 perm/sec)   p_kst 4.721569e-04   p_cons 9.155000e-01   p_joint 6.945098e-04

Joint ci ratio: 9.290670e-02	ci left: 6.626302e-04	ci right 7.275703e-04	k: 1778	n:2560000
Cons ci ratio: 7.442649e-04	ci left: 9.151723e-01	ci right 9.158541e-01	k: 2343715	n:2560000
KS ci ratio: 1.127120e-01	ci left: 4.456429e-04	ci right 4.992476e-04	k: 1208	n:2560000
ENG   2560000 perm   3062 sec   (836 perm/sec)   p_kst 4.718750e-04   p_cons 9.155137e-01   p_joint 6.945313e-04

Joint ci ratio: 9.259485e-02	ci left: 6.646129e-04	ci right 7.295168e-04	k: 1790	n:2570000
Cons ci ratio: 7.428886e-04	ci left: 9.151577e-01	ci right 9.158382e-01	k: 2352831	n:2570000
KS ci ratio: 1.123409e-01	ci left: 4.469341e-04	ci right 5.005054e-04	k: 1216	n:2570000
ENG   2570000 perm   3084 sec   (833 perm/sec)   p_kst 4.731518e-04   p_cons 9.154984e-01   p_joint 6.964981e-04

Joint ci ratio: 9.246590e-02	ci left: 6.639300e-04	ci right 7.286720e-04	k: 1795	n:2580000
Cons ci ratio: 7.413880e-04	ci left: 9.151708e-01	ci right 9.158499e-01	k: 2362018	n:2580000
KS ci ratio: 1.121567e-01	ci left: 4.467086e-04	ci right 5.001594e-04	k: 1220	n:2580000
ENG   2580000 perm   3108 sec   (830 perm/sec)   p_kst 4.728682e-04   p_cons 9.155109e-01   p_joint 6.957364e-04

Joint ci ratio: 9.226063e-02	ci left: 6.643840e-04	ci right 7.290188e-04	k: 1803	n:2590000
Cons ci ratio: 7.400055e-04	ci left: 9.151610e-01	ci right 9.158388e-01	k: 2371146	n:2590000
KS ci ratio: 1.121109e-01	ci left: 4.453591e-04	ci right 4.986252e-04	k: 1221	n:2590000
ENG   2590000 perm   3130 sec   (827 perm/sec)   p_kst 4.714286e-04   p_cons 9.155004e-01   p_joint 6.961390e-04

Joint ci ratio: 9.200592e-02	ci left: 6.655863e-04	ci right 7.301496e-04	k: 1813	n:2600000
Cons ci ratio: 7.385682e-04	ci left: 9.151643e-01	ci right 9.158409e-01	k: 2380308	n:2600000
KS ci ratio: 1.116549e-01	ci left: 4.473848e-04	ci right 5.006611e-04	k: 1231	n:2600000
ENG   2600000 perm   3152 sec   (825 perm/sec)   p_kst 4.734615e-04   p_cons 9.155031e-01   p_joint 6.973077e-04

Joint ci ratio: 9.180369e-02	ci left: 6.660308e-04	ci right 7.304876e-04	k: 1821	n:2610000
Cons ci ratio: 7.370826e-04	ci left: 9.151796e-01	ci right 9.158548e-01	k: 2389501	n:2610000
KS ci ratio: 1.114741e-01	ci left: 4.471605e-04	ci right 5.003182e-04	k: 1235	n:2610000
ENG   2610000 perm   3174 sec   (822 perm/sec)   p_kst 4.731801e-04   p_cons 9.155176e-01   p_joint 6.977011e-04

Joint ci ratio: 9.167802e-02	ci left: 6.653533e-04	ci right 7.296517e-04	k: 1826	n:2620000
Cons ci ratio: 7.355824e-04	ci left: 9.151997e-01	ci right 9.158735e-01	k: 2398707	n:2620000
KS ci ratio: 1.112493e-01	ci left: 4.473090e-04	ci right 5.003701e-04	k: 1240	n:2620000
ENG   2620000 perm   3196 sec   (820 perm/sec)   p_kst 4.732824e-04   p_cons 9.155370e-01   p_joint 6.969466e-04

Joint ci ratio: 9.142810e-02	ci left: 6.665387e-04	ci right 7.307666e-04	k: 1836	n:2630000
Cons ci ratio: 7.341345e-04	ci left: 9.152104e-01	ci right 9.158829e-01	k: 2407889	n:2630000
KS ci ratio: 1.109368e-01	ci left: 4.481958e-04	ci right 5.012031e-04	k: 1247	n:2630000
ENG   2630000 perm   3219 sec   (817 perm/sec)   p_kst 4.741445e-04   p_cons 9.155471e-01   p_joint 6.980989e-04

Joint ci ratio: 9.127917e-02	ci left: 6.662347e-04	ci right 7.303232e-04	k: 1842	n:2640000
Cons ci ratio: 7.327634e-04	ci left: 9.152067e-01	ci right 9.158780e-01	k: 2417033	n:2640000
KS ci ratio: 1.108481e-01	ci left: 4.472347e-04	ci right 5.000832e-04	k: 1249	n:2640000
ENG   2640000 perm   3241 sec   (814 perm/sec)   p_kst 4.731061e-04   p_cons 9.155428e-01   p_joint 6.977273e-04

Joint ci ratio: 9.088535e-02	ci left: 6.696209e-04	ci right 7.337424e-04	k: 1858	n:2650000
Cons ci ratio: 7.314017e-04	ci left: 9.152027e-01	ci right 9.158727e-01	k: 2426176	n:2650000
KS ci ratio: 1.103634e-01	ci left: 4.495831e-04	ci right 5.024618e-04	k: 1260	n:2650000
ENG   2650000 perm   3264 sec   (812 perm/sec)   p_kst 4.754717e-04   p_cons 9.155381e-01   p_joint 7.011321e-04

Joint ci ratio: 9.071472e-02	ci left: 6.696754e-04	ci right 7.336753e-04	k: 1865	n:2660000
Cons ci ratio: 7.301256e-04	ci left: 9.151821e-01	ci right 9.158509e-01	k: 2435275	n:2660000
KS ci ratio: 1.101018e-01	ci left: 4.500864e-04	ci right 5.028906e-04	k: 1266	n:2660000
ENG   2660000 perm   3286 sec   (809 perm/sec)   p_kst 4.759398e-04   p_cons 9.155169e-01   p_joint 7.011278e-04

Joint ci ratio: 9.059347e-02	ci left: 6.689974e-04	ci right 7.328426e-04	k: 1870	n:2670000
Cons ci ratio: 7.287326e-04	ci left: 9.151879e-01	ci right 9.158554e-01	k: 2444444	n:2670000
KS ci ratio: 1.098851e-01	ci left: 4.502219e-04	ci right 5.029313e-04	k: 1271	n:2670000
ENG   2670000 perm   3310 sec   (807 perm/sec)   p_kst 4.760300e-04   p_cons 9.155221e-01   p_joint 7.003745e-04

Joint ci ratio: 9.035228e-02	ci left: 6.701481e-04	ci right 7.339238e-04	k: 1880	n:2680000
Cons ci ratio: 7.273125e-04	ci left: 9.152011e-01	ci right 9.158674e-01	k: 2453633	n:2680000
KS ci ratio: 1.094984e-01	ci left: 4.518080e-04	ci right 5.045050e-04	k: 1280	n:2680000
ENG   2680000 perm   3333 sec   (804 perm/sec)   p_kst 4.776119e-04   p_cons 9.155347e-01   p_joint 7.014925e-04

Joint ci ratio: 9.028038e-02	ci left: 6.687469e-04	ci right 7.323359e-04	k: 1883	n:2690000
Cons ci ratio: 7.259617e-04	ci left: 9.152013e-01	ci right 9.158663e-01	k: 2462787	n:2690000
KS ci ratio: 1.094130e-01	ci left: 4.508516e-04	ci right 5.033933e-04	k: 1282	n:2690000
ENG   2690000 perm   3356 sec   (802 perm/sec)   p_kst 4.765799e-04   p_cons 9.155342e-01   p_joint 7.000000e-04

Joint ci ratio: 9.006548e-02	ci left: 6.695282e-04	ci right 7.330320e-04	k: 1892	n:2700000
Cons ci ratio: 7.245681e-04	ci left: 9.152121e-01	ci right 9.158759e-01	k: 2471970	n:2700000
KS ci ratio: 1.092429e-01	ci left: 4.506227e-04	ci right 5.030509e-04	k: 1286	n:2700000
ENG   2700000 perm   3379 sec   (799 perm/sec)   p_kst 4.762963e-04   p_cons 9.155444e-01   p_joint 7.007407e-04

Joint ci ratio: 8.992310e-02	ci left: 6.692218e-04	ci right 7.325910e-04	k: 1898	n:2710000
Cons ci ratio: 7.232083e-04	ci left: 9.152174e-01	ci right 9.158799e-01	k: 2481138	n:2710000
KS ci ratio: 1.090735e-01	ci left: 4.503956e-04	ci right 5.027109e-04	k: 1290	n:2710000
ENG   2710000 perm   3402 sec   (796 perm/sec)   p_kst 4.760148e-04   p_cons 9.155491e-01   p_joint 7.003690e-04

Joint ci ratio: 8.980499e-02	ci left: 6.685584e-04	ci right 7.317772e-04	k: 1903	n:2720000
Cons ci ratio: 7.219077e-04	ci left: 9.152116e-01	ci right 9.158729e-01	k: 2490276	n:2720000
KS ci ratio: 1.089471e-01	ci left: 4.498126e-04	ci right 5.019957e-04	k: 1293	n:2720000
ENG   2720000 perm   3426 sec   (794 perm/sec)   p_kst 4.753676e-04   p_cons 9.155426e-01   p_joint 6.996324e-04

Joint ci ratio: 8.959346e-02	ci left: 6.693322e-04	ci right 7.324673e-04	k: 1912	n:2730000
Cons ci ratio: 7.205919e-04	ci left: 9.152105e-01	ci right 9.158706e-01	k: 2499427	n:2730000
KS ci ratio: 1.087372e-01	ci left: 4.499466e-04	ci right 5.020383e-04	k: 1298	n:2730000
ENG   2730000 perm   3450 sec   (791 perm/sec)   p_kst 4.754579e-04   p_cons 9.155410e-01   p_joint 7.003663e-04

Joint ci ratio: 8.949998e-02	ci left: 6.683165e-04	ci right 7.312866e-04	k: 1916	n:2740000
Cons ci ratio: 7.192662e-04	ci left: 9.152132e-01	ci right 9.158721e-01	k: 2508588	n:2740000
KS ci ratio: 1.086536e-01	ci left: 4.490145e-04	ci right 5.009558e-04	k: 1300	n:2740000
ENG   2740000 perm   3473 sec   (789 perm/sec)   p_kst 4.744526e-04   p_cons 9.155431e-01   p_joint 6.992701e-04

Joint ci ratio: 8.943010e-02	ci left: 6.669528e-04	ci right 7.297427e-04	k: 1919	n:2750000
Cons ci ratio: 7.179664e-04	ci left: 9.152118e-01	ci right 9.158695e-01	k: 2517738	n:2750000
KS ci ratio: 1.086120e-01	ci left: 4.477355e-04	ci right 4.995076e-04	k: 1301	n:2750000
ENG   2750000 perm   3497 sec   (786 perm/sec)   p_kst 4.730909e-04   p_cons 9.155411e-01   p_joint 6.978182e-04

Joint ci ratio: 8.926752e-02	ci left: 6.670158e-04	ci right 7.296916e-04	k: 1926	n:2760000
Cons ci ratio: 7.166401e-04	ci left: 9.152177e-01	ci right 9.158742e-01	k: 2526908	n:2760000
KS ci ratio: 1.083211e-01	ci left: 4.485807e-04	ci right 5.003028e-04	k: 1308	n:2760000
ENG   2760000 perm   3520 sec   (784 perm/sec)   p_kst 4.739130e-04   p_cons 9.155464e-01   p_joint 6.978261e-04

Joint ci ratio: 8.905975e-02	ci left: 6.677845e-04	ci right 7.303789e-04	k: 1935	n:2770000
Cons ci ratio: 7.153278e-04	ci left: 9.152221e-01	ci right 9.158774e-01	k: 2536074	n:2770000
KS ci ratio: 1.081148e-01	ci left: 4.487175e-04	ci right 5.003506e-04	k: 1313	n:2770000
ENG   2770000 perm   3544 sec   (782 perm/sec)   p_kst 4.740072e-04   p_cons 9.155502e-01   p_joint 6.985560e-04

Joint ci ratio: 8.889918e-02	ci left: 6.678443e-04	ci right 7.303256e-04	k: 1942	n:2780000
Cons ci ratio: 7.140458e-04	ci left: 9.152214e-01	ci right 9.158755e-01	k: 2545226	n:2780000
KS ci ratio: 1.078688e-01	ci left: 4.492034e-04	ci right 5.007673e-04	k: 1319	n:2780000
ENG   2780000 perm   3568 sec   (779 perm/sec)   p_kst 4.744604e-04   p_cons 9.155489e-01   p_joint 6.985612e-04

Joint ci ratio: 8.880786e-02	ci left: 6.668525e-04	ci right 7.291735e-04	k: 1946	n:2790000
Cons ci ratio: 7.128336e-04	ci left: 9.152071e-01	ci right 9.158601e-01	k: 2554340	n:2790000
KS ci ratio: 1.077465e-01	ci left: 4.486396e-04	ci right 5.000767e-04	k: 1322	n:2790000
ENG   2790000 perm   3593 sec   (777 perm/sec)   p_kst 4.738351e-04   p_cons 9.155341e-01   p_joint 6.974910e-04

Joint ci ratio: 8.864865e-02	ci left: 6.669154e-04	ci right 7.291248e-04	k: 1953	n:2800000
Cons ci ratio: 7.115535e-04	ci left: 9.152090e-01	ci right 9.158608e-01	k: 2563499	n:2800000
KS ci ratio: 1.075030e-01	ci left: 4.491225e-04	ci right 5.004912e-04	k: 1328	n:2800000
ENG   2800000 perm   3617 sec   (774 perm/sec)   p_kst 4.742857e-04   p_cons 9.155354e-01   p_joint 6.975000e-04

Joint ci ratio: 8.849029e-02	ci left: 6.669779e-04	ci right 7.290763e-04	k: 1960	n:2810000
Cons ci ratio: 7.102313e-04	ci left: 9.152216e-01	ci right 9.158722e-01	k: 2572688	n:2810000
KS ci ratio: 1.072611e-01	ci left: 4.496021e-04	ci right 5.009027e-04	k: 1334	n:2810000
ENG   2810000 perm   3640 sec   (772 perm/sec)   p_kst 4.747331e-04   p_cons 9.155473e-01   p_joint 6.975089e-04

Joint ci ratio: 8.842274e-02	ci left: 6.656530e-04	ci right 7.275783e-04	k: 1963	n:2820000
Cons ci ratio: 7.089586e-04	ci left: 9.152249e-01	ci right 9.158743e-01	k: 2581851	n:2820000
KS ci ratio: 1.071408e-01	ci left: 4.490430e-04	ci right 5.002188e-04	k: 1337	n:2820000
ENG   2820000 perm   3665 sec   (770 perm/sec)   p_kst 4.741135e-04   p_cons 9.155500e-01   p_joint 6.960993e-04

Joint ci ratio: 8.833288e-02	ci left: 6.646831e-04	ci right 7.264520e-04	k: 1967	n:2830000
Cons ci ratio: 7.077365e-04	ci left: 9.152185e-01	ci right 9.158668e-01	k: 2590987	n:2830000
KS ci ratio: 1.071009e-01	ci left: 4.478002e-04	ci right 4.988140e-04	k: 1338	n:2830000
ENG   2830000 perm   3689 sec   (767 perm/sec)   p_kst 4.727915e-04   p_cons 9.155431e-01   p_joint 6.950530e-04

Joint ci ratio: 8.822091e-02	ci left: 6.640643e-04	ci right 7.256935e-04	k: 1972	n:2840000
Cons ci ratio: 7.064225e-04	ci left: 9.152338e-01	ci right 9.158809e-01	k: 2600184	n:2840000
KS ci ratio: 1.069014e-01	ci left: 4.479369e-04	ci right 4.988653e-04	k: 1343	n:2840000
ENG   2840000 perm   3713 sec   (765 perm/sec)   p_kst 4.728873e-04   p_cons 9.155577e-01   p_joint 6.943662e-04

Joint ci ratio: 8.810937e-02	ci left: 6.634500e-04	ci right 7.249403e-04	k: 1977	n:2850000
Cons ci ratio: 7.052150e-04	ci left: 9.152271e-01	ci right 9.158731e-01	k: 2609319	n:2850000
KS ci ratio: 1.067824e-01	ci left: 4.473897e-04	ci right 4.981957e-04	k: 1346	n:2850000
ENG   2850000 perm   3738 sec   (762 perm/sec)   p_kst 4.722807e-04   p_cons 9.155505e-01   p_joint 6.936842e-04

Joint ci ratio: 8.795387e-02	ci left: 6.635239e-04	ci right 7.249069e-04	k: 1984	n:2860000
Cons ci ratio: 7.040009e-04	ci left: 9.152233e-01	ci right 9.158682e-01	k: 2618462	n:2860000
KS ci ratio: 1.065847e-01	ci left: 4.475270e-04	ci right 4.982486e-04	k: 1351	n:2860000
ENG   2860000 perm   3763 sec   (760 perm/sec)   p_kst 4.723776e-04   p_cons 9.155462e-01   p_joint 6.937063e-04

Joint ci ratio: 8.773311e-02	ci left: 6.646198e-04	ci right 7.259420e-04	k: 1994	n:2870000
Cons ci ratio: 7.026870e-04	ci left: 9.152429e-01	ci right 9.158866e-01	k: 2627672	n:2870000
KS ci ratio: 1.063490e-01	ci left: 4.480026e-04	ci right 4.986588e-04	k: 1357	n:2870000
ENG   2870000 perm   3788 sec   (758 perm/sec)   p_kst 4.728223e-04   p_cons 9.155652e-01   p_joint 6.947735e-04

Joint ci ratio: 8.751401e-02	ci left: 6.657082e-04	ci right 7.269696e-04	k: 2004	n:2880000
Cons ci ratio: 7.015080e-04	ci left: 9.152342e-01	ci right 9.158768e-01	k: 2636801	n:2880000
KS ci ratio: 1.060370e-01	ci left: 4.491510e-04	ci right 4.997788e-04	k: 1365	n:2880000
ENG   2880000 perm   3813 sec   (755 perm/sec)   p_kst 4.739583e-04   p_cons 9.155559e-01   p_joint 6.958333e-04

Joint ci ratio: 8.736164e-02	ci left: 6.657739e-04	ci right 7.269292e-04	k: 2011	n:2890000
Cons ci ratio: 7.003082e-04	ci left: 9.152314e-01	ci right 9.158729e-01	k: 2645947	n:2890000
KS ci ratio: 1.058435e-01	ci left: 4.492811e-04	ci right 4.998254e-04	k: 1370	n:2890000
ENG   2890000 perm   3837 sec   (753 perm/sec)   p_kst 4.740484e-04   p_cons 9.155526e-01   p_joint 6.958478e-04

Joint ci ratio: 8.710220e-02	ci left: 6.675258e-04	ci right 7.286507e-04	k: 2023	n:2900000
Cons ci ratio: 6.991598e-04	ci left: 9.152187e-01	ci right 9.158591e-01	k: 2655064	n:2900000
KS ci ratio: 1.054595e-01	ci left: 4.510891e-04	ci right 5.016412e-04	k: 1380	n:2900000
ENG   2900000 perm   3862 sec   (751 perm/sec)   p_kst 4.758621e-04   p_cons 9.155393e-01   p_joint 6.975862e-04

Joint ci ratio: 8.690916e-02	ci left: 6.682574e-04	ci right 7.293068e-04	k: 2032	n:2910000
Cons ci ratio: 6.979488e-04	ci left: 9.152212e-01	ci right 9.158605e-01	k: 2664225	n:2910000
KS ci ratio: 1.051553e-01	ci left: 4.522157e-04	ci right 5.027389e-04	k: 1388	n:2910000
ENG   2910000 perm   3887 sec   (749 perm/sec)   p_kst 4.769759e-04   p_cons 9.155412e-01   p_joint 6.982818e-04

Joint ci ratio: 8.678121e-02	ci left: 6.679790e-04	ci right 7.289086e-04	k: 2038	n:2920000
Cons ci ratio: 6.967826e-04	ci left: 9.152150e-01	ci right 9.158533e-01	k: 2673361	n:2920000
KS ci ratio: 1.050042e-01	ci left: 4.520009e-04	ci right 5.024230e-04	k: 1392	n:2920000
ENG   2920000 perm   3912 sec   (746 perm/sec)   p_kst 4.767123e-04   p_cons 9.155346e-01   p_joint 6.979452e-04

Joint ci ratio: 8.667503e-02	ci left: 6.673687e-04	ci right 7.281643e-04	k: 2043	n:2930000
Cons ci ratio: 6.955393e-04	ci left: 9.152274e-01	ci right 9.158646e-01	k: 2682551	n:2930000
KS ci ratio: 1.048163e-01	ci left: 4.521199e-04	ci right 5.024595e-04	k: 1397	n:2930000
ENG   2930000 perm   3938 sec   (744 perm/sec)   p_kst 4.767918e-04   p_cons 9.155464e-01   p_joint 6.972696e-04

Joint ci ratio: 8.654811e-02	ci left: 6.670954e-04	ci right 7.277726e-04	k: 2049	n:2940000
Cons ci ratio: 6.944019e-04	ci left: 9.152176e-01	ci right 9.158537e-01	k: 2691676	n:2940000
KS ci ratio: 1.046667e-01	ci left: 4.519070e-04	ci right 5.021466e-04	k: 1401	n:2940000
ENG   2940000 perm   3963 sec   (742 perm/sec)   p_kst 4.765306e-04   p_cons 9.155361e-01   p_joint 6.969388e-04

Joint ci ratio: 8.642175e-02	ci left: 6.668239e-04	ci right 7.273835e-04	k: 2055	n:2950000
Cons ci ratio: 6.932337e-04	ci left: 9.152160e-01	ci right 9.158510e-01	k: 2700825	n:2950000
KS ci ratio: 1.045177e-01	ci left: 4.516955e-04	ci right 5.018358e-04	k: 1405	n:2950000
ENG   2950000 perm   3988 sec   (740 perm/sec)   p_kst 4.762712e-04   p_cons 9.155339e-01   p_joint 6.966102e-04

Joint ci ratio: 8.621230e-02	ci left: 6.678766e-04	ci right 7.283774e-04	k: 2065	n:2960000
Cons ci ratio: 6.920848e-04	ci left: 9.152113e-01	ci right 9.158453e-01	k: 2709965	n:2960000
KS ci ratio: 1.042954e-01	ci left: 4.521437e-04	ci right 5.022204e-04	k: 1411	n:2960000
ENG   2960000 perm   4013 sec   (738 perm/sec)   p_kst 4.766892e-04   p_cons 9.155287e-01   p_joint 6.976351e-04

Joint ci ratio: 8.612900e-02	ci left: 6.669456e-04	ci right 7.273007e-04	k: 2069	n:2970000
Cons ci ratio: 6.909252e-04	ci left: 9.152104e-01	ci right 9.158433e-01	k: 2719116	n:2970000
KS ci ratio: 1.041848e-01	ci left: 4.516050e-04	ci right 5.015658e-04	k: 1414	n:2970000
ENG   2970000 perm   4039 sec   (735 perm/sec)   p_kst 4.760943e-04   p_cons 9.155273e-01   p_joint 6.966330e-04

Joint ci ratio: 8.606672e-02	ci left: 6.656926e-04	ci right 7.258885e-04	k: 2072	n:2980000
Cons ci ratio: 6.897130e-04	ci left: 9.152226e-01	ci right 9.158544e-01	k: 2728306	n:2980000
KS ci ratio: 1.040745e-01	ci left: 4.510701e-04	ci right 5.009156e-04	k: 1417	n:2980000
ENG   2980000 perm   4064 sec   (733 perm/sec)   p_kst 4.755034e-04   p_cons 9.155389e-01   p_joint 6.953020e-04

Joint ci ratio: 8.598384e-02	ci left: 6.647752e-04	ci right 7.248274e-04	k: 2076	n:2990000
Cons ci ratio: 6.885875e-04	ci left: 9.152167e-01	ci right 9.158474e-01	k: 2737442	n:2990000
KS ci ratio: 1.040013e-01	ci left: 4.502130e-04	ci right 4.999267e-04	k: 1419	n:2990000
ENG   2990000 perm   4089 sec   (731 perm/sec)   p_kst 4.745819e-04   p_cons 9.155324e-01   p_joint 6.943144e-04

Joint ci ratio: 8.581871e-02	ci left: 6.651687e-04	ci right 7.251352e-04	k: 2084	n:3000000
Cons ci ratio: 6.874423e-04	ci left: 9.152164e-01	ci right 9.158461e-01	k: 2746595	n:3000000
KS ci ratio: 1.038187e-01	ci left: 4.503356e-04	ci right 4.999702e-04	k: 1424	n:3000000
ENG   3000000 perm   4114 sec   (729 perm/sec)   p_kst 4.746667e-04   p_cons 9.155317e-01   p_joint 6.946667e-04

Joint ci ratio: 8.573655e-02	ci left: 6.642592e-04	ci right 7.240836e-04	k: 2088	n:3010000
Cons ci ratio: 6.863043e-04	ci left: 9.152158e-01	ci right 9.158445e-01	k: 2755747	n:3010000
KS ci ratio: 1.037096e-01	ci left: 4.498103e-04	ci right 4.993317e-04	k: 1427	n:3010000
ENG   3010000 perm   4139 sec   (727 perm/sec)   p_kst 4.740864e-04   p_cons 9.155306e-01   p_joint 6.936877e-04

Joint ci ratio: 8.565463e-02	ci left: 6.633558e-04	ci right 7.230388e-04	k: 2092	n:3020000
Cons ci ratio: 6.851691e-04	ci left: 9.152159e-01	ci right 9.158435e-01	k: 2764901	n:3020000
KS ci ratio: 1.036008e-01	ci left: 4.492885e-04	ci right 4.986974e-04	k: 1430	n:3020000
ENG   3020000 perm   4165 sec   (725 perm/sec)   p_kst 4.735099e-04   p_cons 9.155301e-01   p_joint 6.927152e-04

Joint ci ratio: 8.538977e-02	ci left: 6.653652e-04	ci right 7.250347e-04	k: 2105	n:3030000
Cons ci ratio: 6.840394e-04	ci left: 9.152160e-01	ci right 9.158426e-01	k: 2774055	n:3030000
KS ci ratio: 1.032406e-01	ci left: 4.510206e-04	ci right 5.004372e-04	k: 1440	n:3030000
ENG   3030000 perm   4190 sec   (723 perm/sec)   p_kst 4.752475e-04   p_cons 9.155297e-01   p_joint 6.947195e-04

Joint ci ratio: 8.534932e-02	ci left: 6.638203e-04	ci right 7.233217e-04	k: 2107	n:3040000
Cons ci ratio: 6.828964e-04	ci left: 9.152204e-01	ci right 9.158459e-01	k: 2783222	n:3040000
KS ci ratio: 1.031691e-01	ci left: 4.501779e-04	ci right 4.994659e-04	k: 1442	n:3040000
ENG   3040000 perm   4215 sec   (721 perm/sec)   p_kst 4.743421e-04   p_cons 9.155336e-01   p_joint 6.930921e-04

Joint ci ratio: 8.518781e-02	ci left: 6.642109e-04	ci right 7.236290e-04	k: 2115	n:3050000
Cons ci ratio: 6.817735e-04	ci left: 9.152215e-01	ci right 9.158460e-01	k: 2792379	n:3050000
KS ci ratio: 1.028843e-01	ci left: 4.512573e-04	ci right 5.005188e-04	k: 1450	n:3050000
ENG   3050000 perm   4241 sec   (719 perm/sec)   p_kst 4.754098e-04   p_cons 9.155341e-01   p_joint 6.934426e-04

Joint ci ratio: 8.506730e-02	ci left: 6.639593e-04	ci right 7.232667e-04	k: 2121	n:3060000
Cons ci ratio: 6.805930e-04	ci left: 9.152369e-01	ci right 9.158603e-01	k: 2801580	n:3060000
KS ci ratio: 1.027075e-01	ci left: 4.513746e-04	ci right 5.005591e-04	k: 1455	n:3060000
ENG   3060000 perm   4267 sec   (717 perm/sec)   p_kst 4.754902e-04   p_cons 9.155490e-01   p_joint 6.931373e-04

Joint ci ratio: 8.494731e-02	ci left: 6.637094e-04	ci right 7.229067e-04	k: 2127	n:3070000
Cons ci ratio: 6.794757e-04	ci left: 9.152392e-01	ci right 9.158616e-01	k: 2810741	n:3070000
KS ci ratio: 1.026018e-01	ci left: 4.508564e-04	ci right 4.999309e-04	k: 1458	n:3070000
ENG   3070000 perm   4293 sec   (715 perm/sec)   p_kst 4.749186e-04   p_cons 9.155508e-01   p_joint 6.928339e-04

Joint ci ratio: 8.482782e-02	ci left: 6.634612e-04	ci right 7.225490e-04	k: 2133	n:3080000
Cons ci ratio: 6.783796e-04	ci left: 9.152379e-01	ci right 9.158593e-01	k: 2819891	n:3080000
KS ci ratio: 1.024965e-01	ci left: 4.503416e-04	ci right 4.993068e-04	k: 1461	n:3080000
ENG   3080000 perm   4319 sec   (713 perm/sec)   p_kst 4.743506e-04   p_cons 9.155490e-01   p_joint 6.925325e-04

Joint ci ratio: 8.478816e-02	ci left: 6.619476e-04	ci right 7.208717e-04	k: 2135	n:3090000
Cons ci ratio: 6.773667e-04	ci left: 9.152188e-01	ci right 9.158393e-01	k: 2828986	n:3090000
KS ci ratio: 1.024266e-01	ci left: 4.495149e-04	ci right 4.983547e-04	k: 1463	n:3090000
ENG   3090000 perm   4345 sec   (711 perm/sec)   p_kst 4.734628e-04   p_cons 9.155294e-01   p_joint 6.909385e-04

Joint ci ratio: 8.466934e-02	ci left: 6.617067e-04	ci right 7.205228e-04	k: 2141	n:3100000
Cons ci ratio: 6.763020e-04	ci left: 9.152128e-01	ci right 9.158323e-01	k: 2838121	n:3100000
KS ci ratio: 1.022521e-01	ci left: 4.496365e-04	ci right 4.984013e-04	k: 1468	n:3100000
ENG   3100000 perm   4371 sec   (709 perm/sec)   p_kst 4.735484e-04   p_cons 9.155229e-01   p_joint 6.906452e-04

Joint ci ratio: 8.457072e-02	ci left: 6.611527e-04	ci right 7.198477e-04	k: 2146	n:3110000
Cons ci ratio: 6.752253e-04	ci left: 9.152106e-01	ci right 9.158291e-01	k: 2847268	n:3110000
KS ci ratio: 1.021479e-01	ci left: 4.491307e-04	ci right 4.977880e-04	k: 1471	n:3110000
ENG   3110000 perm   4398 sec   (707 perm/sec)   p_kst 4.729904e-04   p_cons 9.155203e-01   p_joint 6.900322e-04

Joint ci ratio: 8.447244e-02	ci left: 6.606023e-04	ci right 7.191769e-04	k: 2151	n:3120000
Cons ci ratio: 6.741077e-04	ci left: 9.152191e-01	ci right 9.158366e-01	k: 2856448	n:3120000
KS ci ratio: 1.020786e-01	ci left: 4.483158e-04	ci right 4.968499e-04	k: 1473	n:3120000
ENG   3120000 perm   4425 sec   (705 perm/sec)   p_kst 4.721154e-04   p_cons 9.155282e-01   p_joint 6.894231e-04

Joint ci ratio: 8.421836e-02	ci left: 6.625576e-04	ci right 7.211202e-04	k: 2164	n:3130000
Cons ci ratio: 6.730137e-04	ci left: 9.152233e-01	ci right 9.158398e-01	k: 2865615	n:3130000
KS ci ratio: 1.016655e-01	ci left: 4.506197e-04	ci right 4.991940e-04	k: 1485	n:3130000
ENG   3130000 perm   4451 sec   (703 perm/sec)   p_kst 4.744409e-04   p_cons 9.155319e-01   p_joint 6.913738e-04

Joint ci ratio: 8.416013e-02	ci left: 6.613828e-04	ci right 7.197991e-04	k: 2167	n:3140000
Cons ci ratio: 6.718932e-04	ci left: 9.152349e-01	ci right 9.158503e-01	k: 2874805	n:3140000
KS ci ratio: 1.016313e-01	ci left: 4.494949e-04	ci right 4.979308e-04	k: 1486	n:3140000
ENG   3140000 perm   4478 sec   (701 perm/sec)   p_kst 4.732484e-04   p_cons 9.155430e-01   p_joint 6.901274e-04

Joint ci ratio: 8.400526e-02	ci left: 6.617695e-04	ci right 7.201071e-04	k: 2175	n:3150000
Cons ci ratio: 6.708402e-04	ci left: 9.152321e-01	ci right 9.158465e-01	k: 2883950	n:3150000
KS ci ratio: 1.014269e-01	ci left: 4.499244e-04	ci right 4.983032e-04	k: 1492	n:3150000
ENG   3150000 perm   4505 sec   (699 perm/sec)   p_kst 4.736508e-04   p_cons 9.155397e-01   p_joint 6.904762e-04

Joint ci ratio: 8.390894e-02	ci left: 6.612243e-04	ci right 7.194438e-04	k: 2180	n:3160000
Cons ci ratio: 6.697538e-04	ci left: 9.152381e-01	ci right 9.158516e-01	k: 2893123	n:3160000
KS ci ratio: 1.013591e-01	ci left: 4.491174e-04	ci right 4.973752e-04	k: 1494	n:3160000
ENG   3160000 perm   4531 sec   (697 perm/sec)   p_kst 4.727848e-04   p_cons 9.155453e-01   p_joint 6.898734e-04

Joint ci ratio: 8.369808e-02	ci left: 6.625357e-04	ci right 7.207170e-04	k: 2191	n:3170000
Cons ci ratio: 6.686822e-04	ci left: 9.152419e-01	ci right 9.158545e-01	k: 2902289	n:3170000
KS ci ratio: 1.011900e-01	ci left: 4.492380e-04	ci right 4.974235e-04	k: 1499	n:3170000
ENG   3170000 perm   4557 sec   (696 perm/sec)   p_kst 4.728707e-04   p_cons 9.155486e-01   p_joint 6.911672e-04

Joint ci ratio: 8.358378e-02	ci left: 6.622996e-04	ci right 7.203768e-04	k: 2197	n:3180000
Cons ci ratio: 6.676075e-04	ci left: 9.152476e-01	ci right 9.158592e-01	k: 2911461	n:3180000
KS ci ratio: 1.010218e-01	ci left: 4.493578e-04	ci right 4.974713e-04	k: 1504	n:3180000
ENG   3180000 perm   4584 sec   (694 perm/sec)   p_kst 4.729560e-04   p_cons 9.155538e-01   p_joint 6.908805e-04

Joint ci ratio: 8.345100e-02	ci left: 6.623720e-04	ci right 7.203588e-04	k: 2204	n:3190000
Cons ci ratio: 6.665489e-04	ci left: 9.152508e-01	ci right 9.158613e-01	k: 2920625	n:3190000
KS ci ratio: 1.008544e-01	ci left: 4.494770e-04	ci right 4.975188e-04	k: 1509	n:3190000
ENG   3190000 perm   4611 sec   (692 perm/sec)   p_kst 4.730408e-04   p_cons 9.155564e-01   p_joint 6.909091e-04

Joint ci ratio: 8.330001e-02	ci left: 6.627500e-04	ci right 7.206598e-04	k: 2212	n:3200000
Cons ci ratio: 6.655208e-04	ci left: 9.152479e-01	ci right 9.158576e-01	k: 2929770	n:3200000
KS ci ratio: 1.006878e-01	ci left: 4.495955e-04	ci right 4.975659e-04	k: 1514	n:3200000
ENG   3200000 perm   4638 sec   (690 perm/sec)   p_kst 4.731250e-04   p_cons 9.155531e-01   p_joint 6.912500e-04

Joint ci ratio: 8.320609e-02	ci left: 6.622105e-04	ci right 7.200048e-04	k: 2217	n:3210000
Cons ci ratio: 6.644988e-04	ci left: 9.152448e-01	ci right 9.158535e-01	k: 2938914	n:3210000
KS ci ratio: 1.006879e-01	ci left: 4.481949e-04	ci right 4.960159e-04	k: 1514	n:3210000
ENG   3210000 perm   4666 sec   (688 perm/sec)   p_kst 4.716511e-04   p_cons 9.155495e-01   p_joint 6.906542e-04

Joint ci ratio: 8.305643e-02	ci left: 6.625868e-04	ci right 7.203048e-04	k: 2225	n:3220000
Cons ci ratio: 6.634348e-04	ci left: 9.152526e-01	ci right 9.158603e-01	k: 2948093	n:3220000
KS ci ratio: 1.005884e-01	ci left: 4.477112e-04	ci right 4.954306e-04	k: 1517	n:3220000
ENG   3220000 perm   4693 sec   (686 perm/sec)   p_kst 4.711180e-04   p_cons 9.155568e-01   p_joint 6.909938e-04

Joint ci ratio: 8.292614e-02	ci left: 6.626576e-04	ci right 7.202869e-04	k: 2232	n:3230000
Cons ci ratio: 6.623746e-04	ci left: 9.152607e-01	ci right 9.158674e-01	k: 2957273	n:3230000
KS ci ratio: 1.004231e-01	ci left: 4.478342e-04	ci right 4.954836e-04	k: 1522	n:3230000
ENG   3230000 perm   4720 sec   (684 perm/sec)   p_kst 4.712074e-04   p_cons 9.155644e-01   p_joint 6.910217e-04

Joint ci ratio: 8.283348e-02	ci left: 6.621236e-04	ci right 7.196390e-04	k: 2237	n:3240000
Cons ci ratio: 6.613881e-04	ci left: 9.152526e-01	ci right 9.158584e-01	k: 2966401	n:3240000
KS ci ratio: 1.002915e-01	ci left: 4.476556e-04	ci right 4.952199e-04	k: 1526	n:3240000
ENG   3240000 perm   4747 sec   (683 perm/sec)   p_kst 4.709877e-04   p_cons 9.155559e-01   p_joint 6.904321e-04

Joint ci ratio: 8.263061e-02	ci left: 6.634009e-04	ci right 7.208793e-04	k: 2248	n:3250000
Cons ci ratio: 6.604507e-04	ci left: 9.152341e-01	ci right 9.158390e-01	k: 2975495	n:3250000
KS ci ratio: 1.000624e-01	ci left: 4.483781e-04	ci right 4.959039e-04	k: 1533	n:3250000
ENG   3250000 perm   4774 sec   (681 perm/sec)   p_kst 4.716923e-04   p_cons 9.155369e-01   p_joint 6.916923e-04

Joint ci ratio: 8.244748e-02	ci left: 6.643701e-04	ci right 7.217988e-04	k: 2258	n:3260000
Cons ci ratio: 6.594636e-04	ci left: 9.152283e-01	ci right 9.158323e-01	k: 2984630	n:3260000
KS ci ratio: 9.983481e-02	ci left: 4.490963e-04	ci right 4.965836e-04	k: 1540	n:3260000
ENG   3260000 perm   4802 sec   (679 perm/sec)   p_kst 4.723926e-04   p_cons 9.155307e-01   p_joint 6.926380e-04

Outputting figure to mutsig2_images.part000000000057/ENG.2_2063_3260000_0.00047239_0.91553_0.00069264.png
                gene_name: ENG
               theta_stop: 0.100 
                    nperm: 3260000 
                     p_ks: 0.00047 
        ci_ks_bounds_left: 0.00045 
       ci_ks_bounds_right: 0.00050 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.00069 
     ci_joint_bounds_left: 0.00066 
    ci_joint_bounds_right: 0.00072 

Current progress: 82 percent done.
ENOPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.257634e-02	ci left: 4.488969e-01	ci right 4.685272e-01	k: 4587	n:10000
Cons ci ratio: 2.719233e-02	ci left: 6.658208e-01	ci right 6.842772e-01	k: 6751	n:10000
KS ci ratio: 8.522827e-02	ci left: 1.671068e-01	ci right 1.820833e-01	k: 1745	n:10000
ENOPH1   10000 perm   1 sec   (6888 perm/sec)   p_kst 1.745000e-01   p_cons 6.751000e-01   p_joint 4.587000e-01

Outputting figure to mutsig2_images.part000000000057/ENOPH1.2_810_10000_0.1745_0.6751_0.4587.png
                gene_name: ENOPH1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 84 percent done.
ENOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131226e-01	ci left: 1.011041e-01	ci right 1.133258e-01	k: 1071	n:10000
Cons ci ratio: 2.574656e-02	ci left: 6.894995e-01	ci right 7.075847e-01	k: 6986	n:10000
KS ci ratio: 2.980694e-01	ci left: 1.446512e-02	ci right 1.962175e-02	k: 169	n:10000
ENOX2   10000 perm   2 sec   (6485 perm/sec)   p_kst 1.690000e-02   p_cons 6.986000e-01   p_joint 1.071000e-01

Joint ci ratio: 8.153307e-02	ci left: 9.936033e-02	ci right 1.078553e-01	k: 2071	n:20000
Cons ci ratio: 1.816286e-02	ci left: 6.931929e-01	ci right 7.059490e-01	k: 13992	n:20000
KS ci ratio: 2.133397e-01	ci left: 1.482744e-02	ci right 1.841508e-02	k: 331	n:20000
ENOX2   20000 perm   4 sec   (5708 perm/sec)   p_kst 1.655000e-02   p_cons 6.996000e-01   p_joint 1.035500e-01

Joint ci ratio: 6.740971e-02	ci left: 9.787494e-02	ci right 1.047358e-01	k: 3038	n:30000
Cons ci ratio: 1.496188e-02	ci left: 6.906255e-01	ci right 7.010699e-01	k: 20876	n:30000
KS ci ratio: 1.740149e-01	ci left: 1.518449e-02	ci right 1.811019e-02	k: 498	n:30000
ENOX2   30000 perm   6 sec   (5419 perm/sec)   p_kst 1.660000e-02   p_cons 6.958667e-01   p_joint 1.012667e-01

Joint ci ratio: 5.883212e-02	ci left: 9.695331e-02	ci right 1.028549e-01	k: 3995	n:40000
Cons ci ratio: 1.294264e-02	ci left: 6.918171e-01	ci right 7.008544e-01	k: 27854	n:40000
KS ci ratio: 1.514366e-01	ci left: 1.522618e-02	ci right 1.774472e-02	k: 658	n:40000
ENOX2   40000 perm   8 sec   (5233 perm/sec)   p_kst 1.645000e-02   p_cons 6.963500e-01   p_joint 9.987500e-02

Joint ci ratio: 5.249863e-02	ci left: 9.768019e-02	ci right 1.029663e-01	k: 5015	n:50000
Cons ci ratio: 1.160393e-02	ci left: 6.912844e-01	ci right 6.993729e-01	k: 34767	n:50000
KS ci ratio: 1.348472e-01	ci left: 1.549822e-02	ci right 1.775840e-02	k: 830	n:50000
ENOX2   50000 perm   10 sec   (5099 perm/sec)   p_kst 1.660000e-02   p_cons 6.953400e-01   p_joint 1.003000e-01

Joint ci ratio: 4.791657e-02	ci left: 9.794036e-02	ci right 1.027650e-01	k: 6020	n:60000
Cons ci ratio: 1.062100e-02	ci left: 6.905124e-01	ci right 6.979021e-01	k: 41653	n:60000
KS ci ratio: 1.245802e-01	ci left: 1.522113e-02	ci right 1.725939e-02	k: 973	n:60000
ENOX2   60000 perm   12 sec   (4975 perm/sec)   p_kst 1.621667e-02   p_cons 6.942167e-01   p_joint 1.003333e-01

Joint ci ratio: 4.445190e-02	ci left: 9.775879e-02	ci right 1.022173e-01	k: 6998	n:70000
Cons ci ratio: 9.828907e-03	ci left: 6.909723e-01	ci right 6.978116e-01	k: 48608	n:70000
KS ci ratio: 1.148944e-01	ci left: 1.541654e-02	ci right 1.730957e-02	k: 1144	n:70000
ENOX2   70000 perm   14 sec   (4867 perm/sec)   p_kst 1.634286e-02   p_cons 6.944000e-01   p_joint 9.997143e-02

Joint ci ratio: 4.171105e-02	ci left: 9.734739e-02	ci right 1.015067e-01	k: 7953	n:80000
Cons ci ratio: 9.224991e-03	ci left: 6.897655e-01	ci right 6.961705e-01	k: 55438	n:80000
KS ci ratio: 1.072066e-01	ci left: 1.555556e-02	ci right 1.732976e-02	k: 1314	n:80000
ENOX2   80000 perm   17 sec   (4756 perm/sec)   p_kst 1.642500e-02   p_cons 6.929750e-01   p_joint 9.941250e-02

Joint ci ratio: 3.942165e-02	ci left: 9.703414e-02	ci right 1.009473e-01	k: 8908	n:90000
Cons ci ratio: 8.701670e-03	ci left: 6.897409e-01	ci right 6.957800e-01	k: 62349	n:90000
KS ci ratio: 1.011580e-01	ci left: 1.558029e-02	ci right 1.725109e-02	k: 1476	n:90000
ENOX2   90000 perm   19 sec   (4627 perm/sec)   p_kst 1.640000e-02   p_cons 6.927667e-01   p_joint 9.897778e-02

Joint ci ratio: 3.739006e-02	ci left: 9.717539e-02	ci right 1.008879e-01	k: 9902	n:100000
Cons ci ratio: 8.240335e-03	ci left: 6.906620e-01	ci right 6.963868e-01	k: 69353	n:100000
KS ci ratio: 9.600002e-02	ci left: 1.561210e-02	ci right 1.719613e-02	k: 1639	n:100000
ENOX2   100000 perm   22 sec   (4536 perm/sec)   p_kst 1.639000e-02   p_cons 6.935300e-01   p_joint 9.902000e-02

Outputting figure to mutsig2_images.part000000000057/ENOX2.2_1885_100000_0.01639_0.69353_0.09902.png
                gene_name: ENOX2
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 85 percent done.
ENPP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.254207e-02	ci left: 4.492961e-01	ci right 4.689277e-01	k: 4591	n:10000
KS ci ratio: 1.683568e-02	ci left: 8.370436e-01	ci right 8.513552e-01	k: 8443	n:10000
ENPP6   10000 perm   2 sec   (6529 perm/sec)   p_kst 8.443000e-01   p_cons 4.591000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/ENPP6.2_1355_10000_0.8443_0.4591_1.png
                gene_name: ENPP6
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
ENPP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.319896e-02	ci left: 7.318901e-01	ci right 7.491696e-01	k: 7406	n:10000
Cons ci ratio: 2.175058e-02	ci left: 7.561585e-01	ci right 7.728871e-01	k: 7646	n:10000
KS ci ratio: 2.556943e-02	ci left: 6.924235e-01	ci right 7.104591e-01	k: 7015	n:10000
ENPP7   10000 perm   2 sec   (6475 perm/sec)   p_kst 7.015000e-01   p_cons 7.646000e-01   p_joint 7.406000e-01

Outputting figure to mutsig2_images.part000000000057/ENPP7.2_1397_10000_0.7015_0.7646_0.7406.png
                gene_name: ENPP7
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 88 percent done.
ENTPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.276542e-02	ci left: 4.467012e-01	ci right 4.663241e-01	k: 4565	n:10000
Cons ci ratio: 1.177489e-02	ci left: 9.117293e-01	ci right 9.226262e-01	k: 9173	n:10000
KS ci ratio: 7.409025e-02	ci left: 2.105324e-01	ci right 2.268318e-01	k: 2186	n:10000
ENTPD1   10000 perm   2 sec   (6444 perm/sec)   p_kst 2.186000e-01   p_cons 9.173000e-01   p_joint 4.565000e-01

Outputting figure to mutsig2_images.part000000000057/ENTPD1.2_1670_10000_0.2186_0.9173_0.4565.png
                gene_name: ENTPD1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 90 percent done.
ENTPD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.487681e-02	ci left: 4.229601e-01	ci right 4.424791e-01	k: 4327	n:10000
Cons ci ratio: 7.798399e-02	ci left: 1.937745e-01	ci right 2.095997e-01	k: 2016	n:10000
KS ci ratio: 2.737222e-02	ci left: 6.629006e-01	ci right 6.813991e-01	k: 6722	n:10000
ENTPD5   10000 perm   2 sec   (6588 perm/sec)   p_kst 6.722000e-01   p_cons 2.016000e-01   p_joint 4.327000e-01

Outputting figure to mutsig2_images.part000000000057/ENTPD5.2_1339_10000_0.6722_0.2016_0.4327.png
                gene_name: ENTPD5
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 91 percent done.
ENTPD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.120740e-02	ci left: 9.191472e-01	ci right 9.296040e-01	k: 9245	n:10000
Cons ci ratio: 2.241456e-02	ci left: 7.450311e-01	ci right 7.620210e-01	k: 7536	n:10000
KS ci ratio: 2.938462e-02	ci left: 6.307036e-01	ci right 6.496147e-01	k: 6402	n:10000
ENTPD6   10000 perm   2 sec   (6434 perm/sec)   p_kst 6.402000e-01   p_cons 7.536000e-01   p_joint 9.245000e-01

Outputting figure to mutsig2_images.part000000000057/ENTPD6.2_1518_10000_0.6402_0.7536_0.9245.png
                gene_name: ENTPD6
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 93 percent done.
EPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.875899e-02	ci left: 3.829118e-01	ci right 4.021508e-01	k: 3925	n:10000
Cons ci ratio: 6.422738e-02	ci left: 2.626030e-01	ci right 2.801304e-01	k: 2713	n:10000
KS ci ratio: 5.109680e-02	ci left: 3.609240e-01	ci right 3.799515e-01	k: 3704	n:10000
EPC1   10000 perm   2 sec   (5952 perm/sec)   p_kst 3.704000e-01   p_cons 2.713000e-01   p_joint 3.925000e-01

Outputting figure to mutsig2_images.part000000000057/EPC1.2_2571_10000_0.3704_0.2713_0.3925.png
                gene_name: EPC1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 94 percent done.
EPHB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.834659e-02	ci left: 6.471987e-01	ci right 6.659100e-01	k: 6566	n:10000
KS ci ratio: 4.767244e-02	ci left: 3.936645e-01	ci right 4.129918e-01	k: 4033	n:10000
EPHB3   10000 perm   2 sec   (5826 perm/sec)   p_kst 4.033000e-01   p_cons 6.566000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPHB3.2_3061_10000_0.4033_0.6566_1.png
                gene_name: EPHB3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
EPN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.059483e-02	ci left: 6.118092e-01	ci right 6.309201e-01	k: 6214	n:10000
Cons ci ratio: 3.948518e-02	ci left: 4.864527e-01	ci right 5.061494e-01	k: 4963	n:10000
KS ci ratio: 6.404922e-02	ci left: 2.636916e-01	ci right 2.812411e-01	k: 2724	n:10000
EPN1   10000 perm   2 sec   (6234 perm/sec)   p_kst 2.724000e-01   p_cons 4.963000e-01   p_joint 6.214000e-01

Outputting figure to mutsig2_images.part000000000057/EPN1.2_2112_10000_0.2724_0.4963_0.6214.png
                gene_name: EPN1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 97 percent done.
EPN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.695096e-02	ci left: 6.697486e-01	ci right 6.881471e-01	k: 6790	n:10000
Cons ci ratio: 5.493380e-02	ci left: 3.280320e-01	ci right 3.466628e-01	k: 3373	n:10000
KS ci ratio: 2.538035e-02	ci left: 6.955495e-01	ci right 7.135312e-01	k: 7046	n:10000
EPN3   10000 perm   2 sec   (6303 perm/sec)   p_kst 7.046000e-01   p_cons 3.373000e-01   p_joint 6.790000e-01

Outputting figure to mutsig2_images.part000000000057/EPN3.2_1935_10000_0.7046_0.3373_0.679.png
                gene_name: EPN3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 99 percent done.
EPS8L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.441687e-02	ci left: 8.743904e-01	ci right 8.871869e-01	k: 8809	n:10000
KS ci ratio: 4.416207e-02	ci left: 4.308381e-01	ci right 4.503965e-01	k: 4406	n:10000
EPS8L2   10000 perm   2 sec   (6212 perm/sec)   p_kst 4.406000e-01   p_cons 8.809000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000057/EPS8L2.2_2228_10000_0.4406_0.8809_1.png
                gene_name: EPS8L2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000057
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 57 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1654>
Subject: Job 9893928: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1654>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000058> was used as the working directory.
Started at Sat Oct  6 00:06:53 2012
Results reported at Sat Oct  6 00:27:11 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000058.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000058.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 58  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000058.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1244.40 sec.
    Max Memory :      3542 MB
    Max Swap   :      5901 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
58
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 58
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 58: processing genes 5140 - 5229
Calculating significance of each gene.
Using projection method.
5140	ERAP2	7.500984e-01
5141	ERAS	4.983144e-01
5142	ERBB2	1.003038e-01
5143	ERBB2IP	7.446325e-01
5144	ERBB3	1.709926e-03
5145	ERBB4	3.294274e-06
5146	ERC1	7.885209e-01
5147	ERC2	1.221299e-01
5148	ERCC1	5.669282e-01
5149	ERCC2	4.267147e-01
5150	ERCC3	2.290748e-01
5151	ERCC4	6.014715e-01
5152	ERCC5	1.938540e-01
5153	ERCC6	2.016614e-01
5154	ERCC6L	2.110865e-01
5155	ERCC8	1
5156	EREG	3.256482e-01
5157	ERF	4.246186e-01
5158	ERG	4.370400e-01
5159	ERGIC1	1
5160	ERGIC2	1
5161	ERGIC3	6.703994e-01
5162	ERH	1
5163	ERI1	7.690907e-01
5164	ERI2	1.411229e-01
5165	ERI3	8.699549e-01
5166	ERICH1	6.735439e-01
5167	ERLEC1	3.565613e-01
5168	ERLIN1	1
5169	ERLIN2	8.575748e-01
5170	ERMAP	4.586090e-01
5171	ERMN	1.360389e-01
5172	ERMP1	1.819747e-01
5173	ERN1	1
5174	ERN2	1.348294e-01
5175	ERO1L	6.812873e-01
5176	ERO1LB	1.727366e-01
5177	ERP27	5.507519e-02
5178	ERP29	1
5179	ERP44	4.818381e-01
5180	ERRFI1	3.652999e-01
5181	ERV3	1
5182	ERVFRDE1	3.216906e-01
5183	ESAM	5.204955e-01
5184	ESCO1	7.617963e-02
5185	ESCO2	2.187881e-01
5186	ESD	3.800692e-01
5187	ESF1	1.148826e-01
5188	ESM1	2.702405e-02
5189	ESPL1	6.743515e-01
5190	ESPN	1
5191	ESPNL	1
5192	ESR1	2.505228e-04
5193	ESR2	7.176087e-01
5194	ESRP1	7.729132e-01
5195	ESRP2	7.911569e-01
5196	ESRRA	1.884203e-01
5197	ESRRB	1.968758e-01
5198	ESRRG	5.394462e-02
5199	ESX1	8.220155e-03
5200	ESYT1	9.965553e-01
5201	ESYT2	6.317258e-01
5202	ESYT3	2.002455e-01
5203	ETAA1	1.763510e-01
5204	ETF1	2.590784e-01
5205	ETFA	1.898665e-01
5206	ETFB	8.940146e-01
5207	ETFDH	2.468199e-01
5208	ETHE1	1
5209	ETNK1	6.384930e-01
5210	ETNK2	2.449653e-01
5211	ETS1	7.384440e-01
5212	ETS2	2.815630e-01
5213	ETV1	2.589374e-01
5214	ETV2	1
5215	ETV3	5.707882e-01
5216	ETV3L	3.461066e-01
5217	ETV4	5.892272e-01
5218	ETV5	6.820140e-02
5219	ETV6	1.542634e-01
5220	ETV7	1
5221	EVC	2.466496e-01
5222	EVC2	1.639780e-05
5223	EVI2A	1.633683e-01
5224	EVI2B	6.987098e-01
5225	EVI5	3.417278e-01
5226	EVI5L	1
5227	EVL	1.988581e-01
5228	EVPL	9.802231e-01
5229	EVX1	1
Done

Running MutSig 2:
Scatter job 58: processing genes 5140 - 5229
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ERBB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.415012e-02	ci left: 1.707441e-01	ci right 1.858438e-01	k: 1782	n:10000
Cons ci ratio: 8.143879e-02	ci left: 1.803839e-01	ci right 1.957983e-01	k: 1880	n:10000
KS ci ratio: 9.028637e-02	ci left: 1.513922e-01	ci right 1.658072e-01	k: 1585	n:10000
ERBB4   10000 perm   3 sec   (3625 perm/sec)   p_kst 1.585000e-01   p_cons 1.880000e-01   p_joint 1.782000e-01

Outputting figure to mutsig2_images.part000000000058/ERBB4.21_4039_10000_0.1585_0.188_0.1782.png
                gene_name: ERBB4
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 2 percent done.
EVC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.799423e-02	ci left: 3.044128e-01	ci right 3.226959e-01	k: 3135	n:10000
Cons ci ratio: 4.231157e-02	ci left: 4.519911e-01	ci right 4.716311e-01	k: 4618	n:10000
KS ci ratio: 7.534834e-02	ci left: 2.049112e-01	ci right 2.210563e-01	k: 2129	n:10000
EVC2   10000 perm   2 sec   (4458 perm/sec)   p_kst 2.129000e-01   p_cons 4.618000e-01   p_joint 3.135000e-01

Outputting figure to mutsig2_images.part000000000058/EVC2.19_4015_10000_0.2129_0.4618_0.3135.png
                gene_name: EVC2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 3 percent done.
ERBB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.907924e-01	ci left: 3.662531e-02	ci right 4.444524e-02	k: 404	n:10000
Cons ci ratio: 5.907576e-02	ci left: 2.965789e-01	ci right 3.147345e-01	k: 3056	n:10000
KS ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
ERBB3   10000 perm   2 sec   (4504 perm/sec)   p_kst 2.450000e-02   p_cons 3.056000e-01   p_joint 4.040000e-02

Joint ci ratio: 1.534422e-01	ci left: 2.917075e-02	ci right 3.406667e-02	k: 631	n:20000
Cons ci ratio: 4.166011e-02	ci left: 3.004121e-01	ci right 3.132441e-01	k: 6136	n:20000
KS ci ratio: 1.747179e-01	ci left: 2.240180e-02	ci right 2.673793e-02	k: 490	n:20000
ERBB3   20000 perm   5 sec   (4081 perm/sec)   p_kst 2.450000e-02   p_cons 3.068000e-01   p_joint 3.155000e-02

Joint ci ratio: 8.742900e-02	ci left: 6.004786e-02	ci right 6.557051e-02	k: 1883	n:30000
Cons ci ratio: 3.468389e-02	ci left: 2.934244e-01	ci right 3.038146e-01	k: 8958	n:30000
KS ci ratio: 1.447362e-01	ci left: 2.213689e-02	ci right 2.562282e-02	k: 715	n:30000
ERBB3   30000 perm   8 sec   (3950 perm/sec)   p_kst 2.383333e-02   p_cons 2.986000e-01   p_joint 6.276667e-02

Joint ci ratio: 8.155728e-02	ci left: 5.236888e-02	ci right 5.684606e-02	k: 2183	n:40000
Cons ci ratio: 3.016009e-02	ci left: 2.924249e-01	ci right 3.014046e-01	k: 11876	n:40000
KS ci ratio: 1.252562e-01	ci left: 2.240110e-02	ci right 2.541856e-02	k: 955	n:40000
ERBB3   40000 perm   10 sec   (3845 perm/sec)   p_kst 2.387500e-02   p_cons 2.969000e-01   p_joint 5.457500e-02

Joint ci ratio: 7.678672e-02	ci left: 4.763457e-02	ci right 5.145794e-02	k: 2476	n:50000
Cons ci ratio: 2.705408e-02	ci left: 2.917019e-01	ci right 2.997218e-01	k: 14785	n:50000
KS ci ratio: 1.116030e-01	ci left: 2.273454e-02	ci right 2.544110e-02	k: 1203	n:50000
ERBB3   50000 perm   13 sec   (3755 perm/sec)   p_kst 2.406000e-02   p_cons 2.957000e-01   p_joint 4.952000e-02

Joint ci ratio: 7.229067e-02	ci left: 4.502534e-02	ci right 4.841868e-02	k: 2802	n:60000
Cons ci ratio: 2.466648e-02	ci left: 2.925649e-01	ci right 2.998882e-01	k: 17773	n:60000
KS ci ratio: 1.017999e-01	ci left: 2.288762e-02	ci right 2.535871e-02	k: 1446	n:60000
ERBB3   60000 perm   17 sec   (3620 perm/sec)   p_kst 2.410000e-02   p_cons 2.962167e-01   p_joint 4.670000e-02

Joint ci ratio: 6.764929e-02	ci left: 4.422090e-02	ci right 4.733118e-02	k: 3203	n:70000
Cons ci ratio: 2.284873e-02	ci left: 2.926197e-01	ci right 2.993972e-01	k: 20720	n:70000
KS ci ratio: 9.448294e-02	ci left: 2.286488e-02	ci right 2.514624e-02	k: 1679	n:70000
ERBB3   70000 perm   20 sec   (3566 perm/sec)   p_kst 2.398571e-02   p_cons 2.960000e-01   p_joint 4.575714e-02

Outputting figure to mutsig2_images.part000000000058/ERBB3.14_4272_70000_0.023986_0.296_0.045757.png
                gene_name: ERBB3
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 5 percent done.
ERCC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.254263e-02	ci left: 2.177347e-01	ci right 2.342252e-01	k: 2259	n:10000
Cons ci ratio: 3.373865e-02	ci left: 5.646388e-01	ci right 5.841179e-01	k: 5744	n:10000
KS ci ratio: 1.061000e-01	ci left: 1.136922e-01	ci right 1.265300e-01	k: 1200	n:10000
ERCC6   10000 perm   2 sec   (4621 perm/sec)   p_kst 1.200000e-01   p_cons 5.744000e-01   p_joint 2.259000e-01

Joint ci ratio: 5.215381e-02	ci left: 2.144731e-01	ci right 2.260084e-01	k: 4404	n:20000
Cons ci ratio: 2.345807e-02	ci left: 5.757792e-01	ci right 5.894968e-01	k: 11653	n:20000
KS ci ratio: 7.446280e-02	ci left: 1.171500e-01	ci right 1.262603e-01	k: 2433	n:20000
ERCC6   20000 perm   5 sec   (4054 perm/sec)   p_kst 1.216500e-01   p_cons 5.826500e-01   p_joint 2.202000e-01

Outputting figure to mutsig2_images.part000000000058/ERCC6.12_4562_20000_0.12165_0.58265_0.2202.png
                gene_name: ERCC6
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 6 percent done.
ESR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.115807e-02	ci left: 7.660785e-01	ci right 7.825614e-01	k: 7744	n:10000
Cons ci ratio: 4.613273e-02	ci left: 4.095037e-01	ci right 4.289434e-01	k: 4192	n:10000
KS ci ratio: 1.454018e-02	ci left: 8.725497e-01	ci right 8.854286e-01	k: 8791	n:10000
ESR1   10000 perm   2 sec   (4632 perm/sec)   p_kst 8.791000e-01   p_cons 4.192000e-01   p_joint 7.744000e-01

Outputting figure to mutsig2_images.part000000000058/ESR1.12_1820_10000_0.8791_0.4192_0.7744.png
                gene_name: ESR1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 8 percent done.
ERCC5
Processing conservation and coverage...
Processing mutations... 
Skipping 6 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.530440e-02	ci left: 3.250533e-01	ci right 3.436433e-01	k: 3343	n:10000
Cons ci ratio: 9.588261e-02	ci left: 1.362914e-01	ci right 1.501172e-01	k: 1431	n:10000
KS ci ratio: 4.498665e-02	ci left: 4.217637e-01	ci right 4.412762e-01	k: 4315	n:10000
ERCC5   10000 perm   2 sec   (4884 perm/sec)   p_kst 4.315000e-01   p_cons 1.431000e-01   p_joint 3.343000e-01

Outputting figure to mutsig2_images.part000000000058/ERCC5.5_3621_10000_0.4315_0.1431_0.3343.png
                gene_name: ERCC5
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 9 percent done.
ESCO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.557042e-01	ci left: 5.494237e-02	ci right 6.431621e-02	k: 595	n:10000
Cons ci ratio: 4.901255e-03	ci left: 9.820981e-01	ci right 9.870138e-01	k: 9847	n:10000
KS ci ratio: 2.566195e-01	ci left: 1.987038e-02	ci right 2.581208e-02	k: 227	n:10000
ESCO1   10000 perm   2 sec   (4932 perm/sec)   p_kst 2.270000e-02   p_cons 9.847000e-01   p_joint 5.950000e-02

Joint ci ratio: 7.828409e-02	ci left: 1.070221e-01	ci right 1.157912e-01	k: 2227	n:20000
Cons ci ratio: 3.704245e-03	ci left: 9.805860e-01	ci right 9.842719e-01	k: 19650	n:20000
KS ci ratio: 1.761951e-01	ci left: 2.201898e-02	ci right 2.632088e-02	k: 482	n:20000
ESCO1   20000 perm   4 sec   (4522 perm/sec)   p_kst 2.410000e-02   p_cons 9.825000e-01   p_joint 1.113500e-01

Joint ci ratio: 8.025415e-02	ci left: 7.070266e-02	ci right 7.664689e-02	k: 2209	n:30000
Cons ci ratio: 3.043579e-03	ci left: 9.807089e-01	ci right 9.837300e-01	k: 29468	n:30000
KS ci ratio: 1.383377e-01	ci left: 2.426080e-02	ci right 2.789843e-02	k: 781	n:30000
ESCO1   30000 perm   7 sec   (4365 perm/sec)   p_kst 2.603333e-02   p_cons 9.822667e-01   p_joint 7.363333e-02

Joint ci ratio: 7.053711e-02	ci left: 6.914121e-02	ci right 7.422118e-02	k: 2866	n:40000
Cons ci ratio: 2.956513e-03	ci left: 9.762827e-01	ci right 9.791974e-01	k: 39111	n:40000
KS ci ratio: 1.199620e-01	ci left: 2.443822e-02	ci right 2.758110e-02	k: 1039	n:40000
ESCO1   40000 perm   9 sec   (4247 perm/sec)   p_kst 2.597500e-02   p_cons 9.777750e-01   p_joint 7.165000e-02

Joint ci ratio: 6.652133e-02	ci left: 6.277569e-02	ci right 6.711499e-02	k: 3246	n:50000
Cons ci ratio: 2.571167e-03	ci left: 9.776639e-01	ci right 9.802001e-01	k: 48948	n:50000
KS ci ratio: 1.072129e-01	ci left: 2.464219e-02	ci right 2.745320e-02	k: 1301	n:50000
ESCO1   50000 perm   12 sec   (4143 perm/sec)   p_kst 2.602000e-02   p_cons 9.789600e-01   p_joint 6.492000e-02

Joint ci ratio: 6.180458e-02	ci left: 6.088808e-02	ci right 6.478767e-02	k: 3769	n:60000
Cons ci ratio: 2.347543e-03	ci left: 9.777696e-01	ci right 9.800837e-01	k: 58737	n:60000
KS ci ratio: 9.762817e-02	ci left: 2.488773e-02	ci right 2.745838e-02	k: 1569	n:60000
ESCO1   60000 perm   15 sec   (4062 perm/sec)   p_kst 2.615000e-02   p_cons 9.789500e-01   p_joint 6.281667e-02

Outputting figure to mutsig2_images.part000000000058/ESCO1.11_2559_60000_0.02615_0.97895_0.062817.png
                gene_name: ESCO1
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.065 

Current progress: 11 percent done.
ERBB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.402247e-01	ci left: 1.087258e-02	ci right 1.541759e-02	k: 130	n:10000
Cons ci ratio: 6.812237e-01	ci left: 2.189796e-03	ci right 4.514469e-03	k: 32	n:10000
KS ci ratio: 2.663449e-01	ci left: 1.837333e-02	ci right 2.411031e-02	k: 211	n:10000
ERBB2   10000 perm   2 sec   (4982 perm/sec)   p_kst 2.110000e-02   p_cons 3.200000e-03   p_joint 1.300000e-02

Joint ci ratio: 2.338876e-01	ci left: 1.222918e-02	ci right 1.551439e-02	k: 276	n:20000
Cons ci ratio: 4.892032e-01	ci left: 2.421370e-03	ci right 4.028444e-03	k: 63	n:20000
KS ci ratio: 1.991674e-01	ci left: 1.710552e-02	ci right 2.093613e-02	k: 379	n:20000
ERBB2   20000 perm   4 sec   (4485 perm/sec)   p_kst 1.895000e-02   p_cons 3.150000e-03   p_joint 1.380000e-02

Joint ci ratio: 2.298730e-01	ci left: 8.496207e-03	ci right 1.073364e-02	k: 287	n:30000
Cons ci ratio: 4.058478e-01	ci left: 2.472860e-03	ci right 3.759688e-03	k: 92	n:30000
KS ci ratio: 1.643936e-01	ci left: 1.706924e-02	ci right 2.015832e-02	k: 557	n:30000
ERBB2   30000 perm   7 sec   (4281 perm/sec)   p_kst 1.856667e-02   p_cons 3.066667e-03   p_joint 9.566667e-03

Joint ci ratio: 2.210564e-01	ci left: 6.937641e-03	ci right 8.684950e-03	k: 311	n:40000
Cons ci ratio: 3.529063e-01	ci left: 2.533465e-03	ci right 3.640626e-03	k: 122	n:40000
KS ci ratio: 1.415959e-01	ci left: 1.746740e-02	ci right 2.015311e-02	k: 751	n:40000
ERBB2   40000 perm   10 sec   (4150 perm/sec)   p_kst 1.877500e-02   p_cons 3.050000e-03   p_joint 7.775000e-03

Joint ci ratio: 2.477981e-01	ci left: 4.363108e-03	ci right 5.615426e-03	k: 248	n:50000
Cons ci ratio: 3.153926e-01	ci left: 2.594922e-03	ci right 3.584166e-03	k: 153	n:50000
KS ci ratio: 1.263056e-01	ci left: 1.770504e-02	ci right 2.011128e-02	k: 944	n:50000
ERBB2   50000 perm   12 sec   (4049 perm/sec)   p_kst 1.888000e-02   p_cons 3.060000e-03   p_joint 4.960000e-03

Joint ci ratio: 2.362726e-01	ci left: 4.027245e-03	ci right 5.121526e-03	k: 273	n:60000
Cons ci ratio: 2.901263e-01	ci left: 2.593710e-03	ci right 3.488764e-03	k: 181	n:60000
KS ci ratio: 1.153009e-01	ci left: 1.780921e-02	ci right 2.000434e-02	k: 1133	n:60000
ERBB2   60000 perm   15 sec   (3964 perm/sec)   p_kst 1.888333e-02   p_cons 3.016667e-03   p_joint 4.550000e-03

Joint ci ratio: 2.262132e-01	ci left: 3.788330e-03	ci right 4.767749e-03	k: 298	n:70000
Cons ci ratio: 2.694550e-01	ci left: 2.608437e-03	ci right 3.433613e-03	k: 210	n:70000
KS ci ratio: 1.076219e-01	ci left: 1.759807e-02	ci right 1.961354e-02	k: 1301	n:70000
ERBB2   70000 perm   18 sec   (3893 perm/sec)   p_kst 1.858571e-02   p_cons 3.000000e-03   p_joint 4.257143e-03

Joint ci ratio: 2.214917e-01	ci left: 3.468112e-03	ci right 4.343470e-03	k: 311	n:80000
Cons ci ratio: 2.500543e-01	ci left: 2.679759e-03	ci right 3.456972e-03	k: 244	n:80000
KS ci ratio: 9.985371e-02	ci left: 1.795543e-02	ci right 1.985469e-02	k: 1511	n:80000
ERBB2   80000 perm   21 sec   (3828 perm/sec)   p_kst 1.888750e-02   p_cons 3.050000e-03   p_joint 3.887500e-03

Joint ci ratio: 2.184013e-01	ci left: 3.177203e-03	ci right 3.966438e-03	k: 320	n:90000
Cons ci ratio: 2.373242e-01	ci left: 2.663696e-03	ci right 3.391143e-03	k: 271	n:90000
KS ci ratio: 9.344552e-02	ci left: 1.828086e-02	ci right 2.008365e-02	k: 1725	n:90000
ERBB2   90000 perm   24 sec   (3763 perm/sec)   p_kst 1.916667e-02   p_cons 3.011111e-03   p_joint 3.555556e-03

Joint ci ratio: 2.863892e-01	ci left: 1.602489e-03	ci right 2.147055e-03	k: 186	n:100000
Cons ci ratio: 2.244843e-01	ci left: 2.698833e-03	ci right 3.390489e-03	k: 303	n:100000
KS ci ratio: 8.607247e-02	ci left: 1.944466e-02	ci right 2.120332e-02	k: 2031	n:100000
ERBB2   100000 perm   27 sec   (3686 perm/sec)   p_kst 2.031000e-02   p_cons 3.030000e-03   p_joint 1.860000e-03

Joint ci ratio: 2.952433e-01	ci left: 1.364075e-03	ci right 1.844635e-03	k: 175	n:110000
Cons ci ratio: 2.086012e-01	ci left: 2.866237e-03	ci right 3.542194e-03	k: 351	n:110000
KS ci ratio: 8.180950e-02	ci left: 1.960836e-02	ci right 2.128979e-02	k: 2248	n:110000
ERBB2   110000 perm   30 sec   (3619 perm/sec)   p_kst 2.043636e-02   p_cons 3.190909e-03   p_joint 1.590909e-03

Joint ci ratio: 2.986817e-01	ci left: 1.219537e-03	ci right 1.655129e-03	k: 171	n:120000
Cons ci ratio: 2.007723e-01	ci left: 2.848758e-03	ci right 3.492289e-03	k: 379	n:120000
KS ci ratio: 7.828522e-02	ci left: 1.966482e-02	ci right 2.127513e-02	k: 2455	n:120000
ERBB2   120000 perm   34 sec   (3567 perm/sec)   p_kst 2.045833e-02   p_cons 3.158333e-03   p_joint 1.425000e-03

Joint ci ratio: 3.359601e-01	ci left: 8.707520e-04	ci right 1.229028e-03	k: 135	n:130000
Cons ci ratio: 1.942416e-01	ci left: 2.819730e-03	ci right 3.433534e-03	k: 405	n:130000
KS ci ratio: 7.554319e-02	ci left: 1.952516e-02	ci right 2.106557e-02	k: 2637	n:130000
ERBB2   130000 perm   37 sec   (3515 perm/sec)   p_kst 2.028462e-02   p_cons 3.115385e-03   p_joint 1.038462e-03

Joint ci ratio: 3.253685e-01	ci left: 8.675055e-04	ci right 1.210843e-03	k: 144	n:140000
Cons ci ratio: 1.883092e-01	ci left: 2.795140e-03	ci right 3.382883e-03	k: 431	n:140000
KS ci ratio: 7.328284e-02	ci left: 1.929407e-02	ci right 2.076876e-02	k: 2803	n:140000
ERBB2   140000 perm   40 sec   (3466 perm/sec)   p_kst 2.002143e-02   p_cons 3.078571e-03   p_joint 1.028571e-03

Joint ci ratio: 2.182177e-01	ci left: 1.912484e-03	ci right 2.387089e-03	k: 321	n:150000
Cons ci ratio: 1.830897e-01	ci left: 2.767713e-03	ci right 3.331767e-03	k: 456	n:150000
KS ci ratio: 6.902849e-02	ci left: 2.031965e-02	ci right 2.177895e-02	k: 3156	n:150000
ERBB2   150000 perm   44 sec   (3422 perm/sec)   p_kst 2.104000e-02   p_cons 3.040000e-03   p_joint 2.140000e-03

Joint ci ratio: 2.291905e-01	ci left: 1.615925e-03	ci right 2.039954e-03	k: 291	n:160000
Cons ci ratio: 1.788405e-01	ci left: 2.725997e-03	ci right 3.267261e-03	k: 478	n:160000
KS ci ratio: 6.680077e-02	ci left: 2.036447e-02	ci right 2.177796e-02	k: 3370	n:160000
ERBB2   160000 perm   47 sec   (3374 perm/sec)   p_kst 2.106250e-02   p_cons 2.987500e-03   p_joint 1.818750e-03

Joint ci ratio: 2.227976e-01	ci left: 1.615210e-03	ci right 2.025608e-03	k: 308	n:170000
Cons ci ratio: 1.733194e-01	ci left: 2.739963e-03	ci right 3.265448e-03	k: 509	n:170000
KS ci ratio: 6.456443e-02	ci left: 2.053784e-02	ci right 2.191385e-02	k: 3607	n:170000
ERBB2   170000 perm   51 sec   (3328 perm/sec)   p_kst 2.121765e-02   p_cons 2.994118e-03   p_joint 1.811765e-03

Joint ci ratio: 2.242677e-01	ci left: 1.504488e-03	ci right 1.889623e-03	k: 304	n:180000
Cons ci ratio: 1.682800e-01	ci left: 2.752606e-03	ci right 3.263609e-03	k: 540	n:180000
KS ci ratio: 6.280615e-02	ci left: 2.051759e-02	ci right 2.185345e-02	k: 3812	n:180000
ERBB2   180000 perm   55 sec   (3286 perm/sec)   p_kst 2.117778e-02   p_cons 3.000000e-03   p_joint 1.688889e-03

Joint ci ratio: 2.179286e-01	ci left: 1.514797e-03	ci right 1.890143e-03	k: 322	n:190000
Cons ci ratio: 1.643783e-01	ci left: 2.738876e-03	ci right 3.234375e-03	k: 566	n:190000
KS ci ratio: 6.114526e-02	ci left: 2.052586e-02	ci right 2.182565e-02	k: 4022	n:190000
ERBB2   190000 perm   59 sec   (3239 perm/sec)   p_kst 2.116842e-02   p_cons 2.978947e-03   p_joint 1.694737e-03

Joint ci ratio: 2.124105e-01	ci left: 1.519477e-03	ci right 1.885208e-03	k: 339	n:200000
Cons ci ratio: 1.603296e-01	ci left: 2.741042e-03	ci right 3.223543e-03	k: 595	n:200000
KS ci ratio: 5.946616e-02	ci left: 2.063225e-02	ci right 2.190167e-02	k: 4252	n:200000
ERBB2   200000 perm   63 sec   (3192 perm/sec)   p_kst 2.126000e-02   p_cons 2.975000e-03   p_joint 1.695000e-03

Joint ci ratio: 2.084646e-01	ci left: 1.505763e-03	ci right 1.860601e-03	k: 352	n:210000
Cons ci ratio: 1.559417e-01	ci left: 2.766017e-03	ci right 3.238343e-03	k: 629	n:210000
KS ci ratio: 5.799092e-02	ci left: 2.067732e-02	ci right 2.191689e-02	k: 4471	n:210000
ERBB2   210000 perm   67 sec   (3154 perm/sec)   p_kst 2.129048e-02   p_cons 2.995238e-03   p_joint 1.676190e-03

Joint ci ratio: 2.140089e-01	ci left: 1.359817e-03	ci right 1.689904e-03	k: 334	n:220000
Cons ci ratio: 1.531733e-01	ci left: 2.740788e-03	ci right 3.199735e-03	k: 652	n:220000
KS ci ratio: 5.672541e-02	ci left: 2.064244e-02	ci right 2.185203e-02	k: 4673	n:220000
ERBB2   220000 perm   71 sec   (3117 perm/sec)   p_kst 2.124091e-02   p_cons 2.963636e-03   p_joint 1.518182e-03

Joint ci ratio: 2.121220e-01	ci left: 1.325387e-03	ci right 1.643910e-03	k: 340	n:230000
Cons ci ratio: 1.498815e-01	ci left: 2.742930e-03	ci right 3.191480e-03	k: 681	n:230000
KS ci ratio: 5.543484e-02	ci left: 2.068807e-02	ci right 2.187187e-02	k: 4893	n:230000
ERBB2   230000 perm   75 sec   (3082 perm/sec)   p_kst 2.127391e-02   p_cons 2.960870e-03   p_joint 1.478261e-03

Joint ci ratio: 2.179674e-01	ci left: 1.199192e-03	ci right 1.496393e-03	k: 322	n:240000
Cons ci ratio: 1.467933e-01	ci left: 2.744990e-03	ci right 3.183816e-03	k: 710	n:240000
KS ci ratio: 5.429908e-02	ci left: 2.067673e-02	ci right 2.183487e-02	k: 5100	n:240000
ERBB2   240000 perm   79 sec   (3046 perm/sec)   p_kst 2.125000e-02   p_cons 2.958333e-03   p_joint 1.341667e-03

Joint ci ratio: 1.685073e-01	ci left: 1.977977e-03	ci right 2.345717e-03	k: 539	n:250000
Cons ci ratio: 1.444770e-01	ci left: 2.723836e-03	ci right 3.151816e-03	k: 733	n:250000
KS ci ratio: 5.311803e-02	ci left: 2.075338e-02	ci right 2.188976e-02	k: 5329	n:250000
ERBB2   250000 perm   83 sec   (3012 perm/sec)   p_kst 2.131600e-02   p_cons 2.932000e-03   p_joint 2.156000e-03

Joint ci ratio: 1.656197e-01	ci left: 1.971922e-03	ci right 2.331628e-03	k: 558	n:260000
Cons ci ratio: 1.413338e-01	ci left: 2.741460e-03	ci right 3.162049e-03	k: 766	n:260000
KS ci ratio: 5.210669e-02	ci left: 2.074844e-02	ci right 2.186227e-02	k: 5538	n:260000
ERBB2   260000 perm   87 sec   (2978 perm/sec)   p_kst 2.130000e-02   p_cons 2.946154e-03   p_joint 2.146154e-03

Joint ci ratio: 1.293712e-01	ci left: 3.169590e-03	ci right 3.611547e-03	k: 914	n:270000
Cons ci ratio: 1.257673e-01	ci left: 3.359643e-03	ci right 3.814079e-03	k: 967	n:270000
KS ci ratio: 5.123303e-02	ci left: 2.067823e-02	ci right 2.176912e-02	k: 5729	n:270000
ERBB2   270000 perm   92 sec   (2945 perm/sec)   p_kst 2.121852e-02   p_cons 3.581481e-03   p_joint 3.385185e-03

Joint ci ratio: 1.285362e-01	ci left: 3.097857e-03	ci right 3.526811e-03	k: 926	n:280000
Cons ci ratio: 1.230010e-01	ci left: 3.391913e-03	ci right 3.839887e-03	k: 1011	n:280000
KS ci ratio: 5.025035e-02	ci left: 2.073663e-02	ci right 2.180902e-02	k: 5955	n:280000
ERBB2   280000 perm   96 sec   (2912 perm/sec)   p_kst 2.126786e-02   p_cons 3.610714e-03   p_joint 3.307143e-03

Joint ci ratio: 1.296710e-01	ci left: 2.937628e-03	ci right 3.348263e-03	k: 910	n:290000
Cons ci ratio: 1.204096e-01	ci left: 3.422058e-03	ci right 3.863814e-03	k: 1055	n:290000
KS ci ratio: 4.939566e-02	ci left: 2.072988e-02	ci right 2.178316e-02	k: 6163	n:290000
ERBB2   290000 perm   101 sec   (2876 perm/sec)   p_kst 2.125172e-02   p_cons 3.637931e-03   p_joint 3.137931e-03

Joint ci ratio: 1.297493e-01	ci left: 2.836472e-03	ci right 3.233224e-03	k: 909	n:300000
Cons ci ratio: 1.186266e-01	ci left: 3.411466e-03	ci right 3.844876e-03	k: 1087	n:300000
KS ci ratio: 4.859873e-02	ci left: 2.071055e-02	ci right 2.174540e-02	k: 6367	n:300000
ERBB2   300000 perm   105 sec   (2845 perm/sec)   p_kst 2.122333e-02   p_cons 3.623333e-03   p_joint 3.030000e-03

Joint ci ratio: 1.286962e-01	ci left: 2.791792e-03	ci right 3.178882e-03	k: 924	n:310000
Cons ci ratio: 1.173948e-01	ci left: 3.373418e-03	ci right 3.797235e-03	k: 1110	n:310000
KS ci ratio: 4.780202e-02	ci left: 2.072447e-02	ci right 2.174257e-02	k: 6581	n:310000
ERBB2   310000 perm   110 sec   (2815 perm/sec)   p_kst 2.122903e-02   p_cons 3.580645e-03   p_joint 2.980645e-03

Joint ci ratio: 1.281476e-01	ci left: 2.728739e-03	ci right 3.105352e-03	k: 932	n:320000
Cons ci ratio: 1.153864e-01	ci left: 3.386327e-03	ci right 3.803992e-03	k: 1149	n:320000
KS ci ratio: 4.714258e-02	ci left: 2.065116e-02	ci right 2.165128e-02	k: 6767	n:320000
ERBB2   320000 perm   115 sec   (2786 perm/sec)   p_kst 2.114687e-02   p_cons 3.590625e-03   p_joint 2.912500e-03

Joint ci ratio: 1.297672e-01	ci left: 2.578589e-03	ci right 2.939322e-03	k: 909	n:330000
Cons ci ratio: 1.137662e-01	ci left: 3.380845e-03	ci right 3.791585e-03	k: 1182	n:330000
KS ci ratio: 4.634316e-02	ci left: 2.072919e-02	ci right 2.171561e-02	k: 7002	n:330000
ERBB2   330000 perm   120 sec   (2757 perm/sec)   p_kst 2.121818e-02   p_cons 3.581818e-03   p_joint 2.754545e-03

Joint ci ratio: 1.309317e-01	ci left: 2.457214e-03	ci right 2.804291e-03	k: 893	n:340000
Cons ci ratio: 1.123980e-01	ci left: 3.364288e-03	ci right 3.767775e-03	k: 1211	n:340000
KS ci ratio: 4.562818e-02	ci left: 2.076204e-02	ci right 2.173438e-02	k: 7223	n:340000
ERBB2   340000 perm   125 sec   (2728 perm/sec)   p_kst 2.124412e-02   p_cons 3.561765e-03   p_joint 2.626471e-03

Joint ci ratio: 1.310838e-01	ci left: 2.381474e-03	ci right 2.718275e-03	k: 891	n:350000
Cons ci ratio: 1.109436e-01	ci left: 3.357040e-03	ci right 3.754107e-03	k: 1243	n:350000
KS ci ratio: 4.496381e-02	ci left: 2.077617e-02	ci right 2.173464e-02	k: 7438	n:350000
ERBB2   350000 perm   130 sec   (2699 perm/sec)   p_kst 2.125143e-02   p_cons 3.551429e-03   p_joint 2.545714e-03

Joint ci ratio: 1.346137e-01	ci left: 2.191776e-03	ci right 2.510763e-03	k: 845	n:360000
Cons ci ratio: 1.095872e-01	ci left: 3.347524e-03	ci right 3.738312e-03	k: 1274	n:360000
KS ci ratio: 4.433653e-02	ci left: 2.078137e-02	ci right 2.172636e-02	k: 7650	n:360000
ERBB2   360000 perm   135 sec   (2671 perm/sec)   p_kst 2.125000e-02   p_cons 3.538889e-03   p_joint 2.347222e-03

Joint ci ratio: 1.372445e-01	ci left: 2.048983e-03	ci right 2.353492e-03	k: 813	n:370000
Cons ci ratio: 1.081963e-01	ci left: 3.343810e-03	ci right 3.728895e-03	k: 1307	n:370000
KS ci ratio: 4.364413e-02	ci left: 2.087194e-02	ci right 2.180585e-02	k: 7894	n:370000
ERBB2   370000 perm   140 sec   (2644 perm/sec)   p_kst 2.133514e-02   p_cons 3.532432e-03   p_joint 2.197297e-03

Joint ci ratio: 1.567965e-01	ci left: 1.513339e-03	ci right 1.773302e-03	k: 623	n:380000
Cons ci ratio: 1.068971e-01	ci left: 3.337760e-03	ci right 3.717242e-03	k: 1339	n:380000
KS ci ratio: 4.378995e-02	ci left: 2.020019e-02	ci right 2.110714e-02	k: 7847	n:380000
ERBB2   380000 perm   145 sec   (2617 perm/sec)   p_kst 2.065000e-02   p_cons 3.523684e-03   p_joint 1.639474e-03

Joint ci ratio: 1.561743e-01	ci left: 1.486852e-03	ci right 1.741157e-03	k: 628	n:390000
Cons ci ratio: 1.056823e-01	ci left: 3.329549e-03	ci right 3.703528e-03	k: 1370	n:390000
KS ci ratio: 4.319622e-02	ci left: 2.023260e-02	ci right 2.112839e-02	k: 8064	n:390000
ERBB2   390000 perm   150 sec   (2592 perm/sec)   p_kst 2.067692e-02   p_cons 3.512821e-03   p_joint 1.610256e-03

Joint ci ratio: 1.547064e-01	ci left: 1.478514e-03	ci right 1.728795e-03	k: 640	n:400000
Cons ci ratio: 1.043214e-01	ci left: 3.333947e-03	ci right 3.703302e-03	k: 1406	n:400000
KS ci ratio: 4.263390e-02	ci left: 2.025605e-02	ci right 2.114091e-02	k: 8278	n:400000
ERBB2   400000 perm   156 sec   (2567 perm/sec)   p_kst 2.069500e-02   p_cons 3.515000e-03   p_joint 1.600000e-03

Joint ci ratio: 1.532791e-01	ci left: 1.470592e-03	ci right 1.717025e-03	k: 652	n:410000
Cons ci ratio: 1.032273e-01	ci left: 3.323902e-03	ci right 3.688048e-03	k: 1436	n:410000
KS ci ratio: 4.215892e-02	ci left: 2.021567e-02	ci right 2.108869e-02	k: 8466	n:410000
ERBB2   410000 perm   161 sec   (2544 perm/sec)   p_kst 2.064878e-02   p_cons 3.502439e-03   p_joint 1.590244e-03

Joint ci ratio: 1.512088e-01	ci left: 1.476803e-03	ci right 1.720632e-03	k: 670	n:420000
Cons ci ratio: 1.016468e-01	ci left: 3.349162e-03	ci right 3.710122e-03	k: 1481	n:420000
KS ci ratio: 4.165526e-02	ci left: 2.021968e-02	ci right 2.108219e-02	k: 8672	n:420000
ERBB2   420000 perm   167 sec   (2512 perm/sec)   p_kst 2.064762e-02   p_cons 3.526190e-03   p_joint 1.595238e-03

Joint ci ratio: 1.374349e-01	ci left: 1.758569e-03	ci right 2.020309e-03	k: 811	n:430000
Cons ci ratio: 1.006674e-01	ci left: 3.337009e-03	ci right 3.692989e-03	k: 1510	n:430000
KS ci ratio: 4.115740e-02	ci left: 2.023507e-02	ci right 2.108768e-02	k: 8883	n:430000
ERBB2   430000 perm   173 sec   (2489 perm/sec)   p_kst 2.065814e-02   p_cons 3.511628e-03   p_joint 1.886047e-03

Joint ci ratio: 1.356912e-01	ci left: 1.764698e-03	ci right 2.023750e-03	k: 832	n:440000
Cons ci ratio: 9.945687e-02	ci left: 3.343155e-03	ci right 3.695251e-03	k: 1547	n:440000
KS ci ratio: 4.070441e-02	ci left: 2.022283e-02	ci right 2.106532e-02	k: 9082	n:440000
ERBB2   440000 perm   179 sec   (2461 perm/sec)   p_kst 2.064091e-02   p_cons 3.515909e-03   p_joint 1.890909e-03

Joint ci ratio: 1.352071e-01	ci left: 1.738363e-03	ci right 1.992564e-03	k: 838	n:450000
Cons ci ratio: 9.850750e-02	ci left: 3.333878e-03	ci right 3.681452e-03	k: 1577	n:450000
KS ci ratio: 4.026161e-02	ci left: 2.021557e-02	ci right 2.104839e-02	k: 9283	n:450000
ERBB2   450000 perm   185 sec   (2439 perm/sec)   p_kst 2.062889e-02   p_cons 3.504444e-03   p_joint 1.862222e-03

Joint ci ratio: 1.334680e-01	ci left: 1.746791e-03	ci right 1.998680e-03	k: 860	n:460000
Cons ci ratio: 9.740261e-02	ci left: 3.337746e-03	ci right 3.681598e-03	k: 1613	n:460000
KS ci ratio: 3.978588e-02	ci left: 2.025604e-02	ci right 2.108044e-02	k: 9506	n:460000
ERBB2   460000 perm   190 sec   (2416 perm/sec)   p_kst 2.066522e-02   p_cons 3.506522e-03   p_joint 1.869565e-03

Joint ci ratio: 1.320945e-01	ci left: 1.746651e-03	ci right 1.995724e-03	k: 878	n:470000
Cons ci ratio: 9.662837e-02	ci left: 3.320706e-03	ci right 3.659929e-03	k: 1639	n:470000
KS ci ratio: 3.936382e-02	ci left: 2.025692e-02	ci right 2.107241e-02	k: 9711	n:470000
ERBB2   470000 perm   196 sec   (2394 perm/sec)   p_kst 2.066170e-02   p_cons 3.487234e-03   p_joint 1.868085e-03

Joint ci ratio: 1.309821e-01	ci left: 1.740484e-03	ci right 1.986425e-03	k: 893	n:480000
Cons ci ratio: 9.538517e-02	ci left: 3.338958e-03	ci right 3.675412e-03	k: 1682	n:480000
KS ci ratio: 3.894087e-02	ci left: 2.027225e-02	ci right 2.107939e-02	k: 9923	n:480000
ERBB2   480000 perm   202 sec   (2372 perm/sec)   p_kst 2.067292e-02   p_cons 3.504167e-03   p_joint 1.860417e-03

Joint ci ratio: 1.327823e-01	ci left: 1.657596e-03	ci right 1.895296e-03	k: 869	n:490000
Cons ci ratio: 9.446375e-02	ci left: 3.336564e-03	ci right 3.669349e-03	k: 1715	n:490000
KS ci ratio: 3.781555e-02	ci left: 2.105323e-02	ci right 2.186672e-02	k: 10514	n:490000
ERBB2   490000 perm   208 sec   (2351 perm/sec)   p_kst 2.145714e-02   p_cons 3.500000e-03   p_joint 1.773469e-03

Joint ci ratio: 1.314296e-01	ci left: 1.659254e-03	ci right 1.894579e-03	k: 887	n:500000
Cons ci ratio: 9.348811e-02	ci left: 3.340141e-03	ci right 3.669654e-03	k: 1751	n:500000
KS ci ratio: 3.744368e-02	ci left: 2.104822e-02	ci right 2.185334e-02	k: 10724	n:500000
ERBB2   500000 perm   215 sec   (2330 perm/sec)   p_kst 2.144800e-02   p_cons 3.502000e-03   p_joint 1.774000e-03

Joint ci ratio: 1.298306e-01	ci left: 1.668448e-03	ci right 1.901976e-03	k: 909	n:510000
Cons ci ratio: 9.233502e-02	ci left: 3.358919e-03	ci right 3.685977e-03	k: 1795	n:510000
KS ci ratio: 3.706525e-02	ci left: 2.106286e-02	ci right 2.186023e-02	k: 10944	n:510000
ERBB2   510000 perm   221 sec   (2310 perm/sec)   p_kst 2.145882e-02   p_cons 3.519608e-03   p_joint 1.782353e-03

Joint ci ratio: 1.153158e-01	ci left: 2.089416e-03	ci right 2.346950e-03	k: 1152	n:520000
Cons ci ratio: 9.139820e-02	ci left: 3.363844e-03	ci right 3.687880e-03	k: 1832	n:520000
KS ci ratio: 3.670814e-02	ci left: 2.106555e-02	ci right 2.185518e-02	k: 11158	n:520000
ERBB2   520000 perm   227 sec   (2290 perm/sec)   p_kst 2.145769e-02   p_cons 3.523077e-03   p_joint 2.215385e-03

Joint ci ratio: 1.152682e-01	ci left: 2.051823e-03	ci right 2.304612e-03	k: 1153	n:530000
Cons ci ratio: 9.061097e-02	ci left: 3.359378e-03	ci right 3.680049e-03	k: 1864	n:530000
KS ci ratio: 3.638406e-02	ci left: 2.104199e-02	ci right 2.182363e-02	k: 11358	n:530000
ERBB2   530000 perm   233 sec   (2270 perm/sec)   p_kst 2.143019e-02   p_cons 3.516981e-03   p_joint 2.175472e-03

Joint ci ratio: 1.142823e-01	ci left: 2.049800e-03	ci right 2.300034e-03	k: 1173	n:540000
Cons ci ratio: 8.958347e-02	ci left: 3.375004e-03	ci right 3.693322e-03	k: 1907	n:540000
KS ci ratio: 3.606203e-02	ci left: 2.102668e-02	ci right 2.180069e-02	k: 11562	n:540000
ERBB2   540000 perm   240 sec   (2251 perm/sec)   p_kst 2.141111e-02   p_cons 3.531481e-03   p_joint 2.172222e-03

Joint ci ratio: 1.140900e-01	ci left: 2.019594e-03	ci right 2.265697e-03	k: 1177	n:550000
Cons ci ratio: 9.512348e-02	ci left: 2.931719e-03	ci right 3.226281e-03	k: 1692	n:550000
KS ci ratio: 3.573754e-02	ci left: 2.102457e-02	ci right 2.179139e-02	k: 11773	n:550000
ERBB2   550000 perm   246 sec   (2232 perm/sec)   p_kst 2.140545e-02   p_cons 3.076364e-03   p_joint 2.140000e-03

Joint ci ratio: 1.152749e-01	ci left: 1.941898e-03	ci right 2.181158e-03	k: 1153	n:560000
Cons ci ratio: 9.440177e-02	ci left: 2.924695e-03	ci right 3.216198e-03	k: 1718	n:560000
KS ci ratio: 3.547159e-02	ci left: 2.096415e-02	ci right 2.172296e-02	k: 11951	n:560000
ERBB2   560000 perm   253 sec   (2214 perm/sec)   p_kst 2.134107e-02   p_cons 3.067857e-03   p_joint 2.058929e-03

Joint ci ratio: 1.139973e-01	ci left: 1.952136e-03	ci right 2.189813e-03	k: 1179	n:570000
Cons ci ratio: 9.324176e-02	ci left: 2.947055e-03	ci right 3.236980e-03	k: 1761	n:570000
KS ci ratio: 3.513462e-02	ci left: 2.099631e-02	ci right 2.174892e-02	k: 12181	n:570000
ERBB2   570000 perm   260 sec   (2193 perm/sec)   p_kst 2.137018e-02   p_cons 3.089474e-03   p_joint 2.068421e-03

Joint ci ratio: 1.129021e-01	ci left: 1.957009e-03	ci right 2.192837e-03	k: 1202	n:580000
Cons ci ratio: 9.245805e-02	ci left: 2.946766e-03	ci right 3.234095e-03	k: 1791	n:580000
KS ci ratio: 3.482571e-02	ci left: 2.100517e-02	ci right 2.175135e-02	k: 12398	n:580000
ERBB2   580000 perm   267 sec   (2170 perm/sec)   p_kst 2.137586e-02   p_cons 3.087931e-03   p_joint 2.072414e-03

Joint ci ratio: 1.126230e-01	ci left: 1.933720e-03	ci right 2.166128e-03	k: 1208	n:590000
Cons ci ratio: 9.171904e-02	ci left: 2.944842e-03	ci right 3.229564e-03	k: 1820	n:590000
KS ci ratio: 3.452061e-02	ci left: 2.101880e-02	ci right 2.175879e-02	k: 12618	n:590000
ERBB2   590000 perm   274 sec   (2152 perm/sec)   p_kst 2.138644e-02   p_cons 3.084746e-03   p_joint 2.047458e-03

Joint ci ratio: 1.117029e-01	ci left: 1.933890e-03	ci right 2.164294e-03	k: 1228	n:600000
Cons ci ratio: 9.080074e-02	ci left: 2.956021e-03	ci right 3.238811e-03	k: 1857	n:600000
KS ci ratio: 3.424248e-02	ci left: 2.100887e-02	ci right 2.174243e-02	k: 12824	n:600000
ERBB2   600000 perm   281 sec   (2134 perm/sec)   p_kst 2.137333e-02   p_cons 3.095000e-03   p_joint 2.046667e-03

Joint ci ratio: 1.108940e-01	ci left: 1.930873e-03	ci right 2.159143e-03	k: 1246	n:610000
Cons ci ratio: 8.986192e-02	ci left: 2.970053e-03	ci right 3.251093e-03	k: 1896	n:610000
KS ci ratio: 3.396430e-02	ci left: 2.100741e-02	ci right 2.173485e-02	k: 13035	n:610000
ERBB2   610000 perm   288 sec   (2117 perm/sec)   p_kst 2.136885e-02   p_cons 3.108197e-03   p_joint 2.042623e-03

Joint ci ratio: 1.100589e-01	ci left: 1.929528e-03	ci right 2.155810e-03	k: 1265	n:620000
Cons ci ratio: 8.929933e-02	ci left: 2.959990e-03	ci right 3.238233e-03	k: 1920	n:620000
KS ci ratio: 3.368890e-02	ci left: 2.101082e-02	ci right 2.173237e-02	k: 13249	n:620000
ERBB2   620000 perm   295 sec   (2100 perm/sec)   p_kst 2.136935e-02   p_cons 3.096774e-03   p_joint 2.040323e-03

Joint ci ratio: 1.090299e-01	ci left: 1.935953e-03	ci right 2.160729e-03	k: 1289	n:630000
Cons ci ratio: 8.865577e-02	ci left: 2.956462e-03	ci right 3.232266e-03	k: 1948	n:630000
KS ci ratio: 3.339096e-02	ci left: 2.105036e-02	ci right 2.176675e-02	k: 13486	n:630000
ERBB2   630000 perm   302 sec   (2083 perm/sec)   p_kst 2.140635e-02   p_cons 3.092063e-03   p_joint 2.046032e-03

Joint ci ratio: 1.133387e-01	ci left: 1.759864e-03	ci right 1.972810e-03	k: 1193	n:640000
Cons ci ratio: 8.800360e-02	ci left: 2.954578e-03	ci right 3.228075e-03	k: 1977	n:640000
KS ci ratio: 3.311682e-02	ci left: 2.106854e-02	ci right 2.177955e-02	k: 13710	n:640000
ERBB2   640000 perm   310 sec   (2066 perm/sec)   p_kst 2.142187e-02   p_cons 3.089062e-03   p_joint 1.864063e-03

Joint ci ratio: 1.129618e-01	ci left: 1.744748e-03	ci right 1.955116e-03	k: 1201	n:650000
Cons ci ratio: 8.727841e-02	ci left: 2.958780e-03	ci right 3.230294e-03	k: 2010	n:650000
KS ci ratio: 3.286619e-02	ci left: 2.106482e-02	ci right 2.177022e-02	k: 13920	n:650000
ERBB2   650000 perm   317 sec   (2050 perm/sec)   p_kst 2.141538e-02   p_cons 3.092308e-03   p_joint 1.847692e-03

Joint ci ratio: 1.124955e-01	ci left: 1.733036e-03	ci right 1.941072e-03	k: 1211	n:660000
Cons ci ratio: 8.659211e-02	ci left: 2.961381e-03	ci right 3.230889e-03	k: 2042	n:660000
KS ci ratio: 3.259878e-02	ci left: 2.108979e-02	ci right 2.179017e-02	k: 14149	n:660000
ERBB2   660000 perm   324 sec   (2034 perm/sec)   p_kst 2.143788e-02   p_cons 3.093939e-03   p_joint 1.834848e-03

Joint ci ratio: 1.122653e-01	ci left: 1.714422e-03	ci right 1.919775e-03	k: 1216	n:670000
Cons ci ratio: 8.610928e-02	ci left: 2.950768e-03	ci right 3.217737e-03	k: 2065	n:670000
KS ci ratio: 3.235390e-02	ci left: 2.109331e-02	ci right 2.178845e-02	k: 14364	n:670000
ERBB2   670000 perm   332 sec   (2018 perm/sec)   p_kst 2.143881e-02   p_cons 3.082090e-03   p_joint 1.814925e-03

Joint ci ratio: 1.112638e-01	ci left: 1.720659e-03	ci right 1.924799e-03	k: 1238	n:680000
Cons ci ratio: 8.524644e-02	ci left: 2.967816e-03	ci right 3.233503e-03	k: 2107	n:680000
KS ci ratio: 3.210995e-02	ci left: 2.110258e-02	ci right 2.179268e-02	k: 14583	n:680000
ERBB2   680000 perm   339 sec   (2004 perm/sec)   p_kst 2.144559e-02   p_cons 3.098529e-03   p_joint 1.820588e-03

Joint ci ratio: 1.023070e-01	ci left: 2.014540e-03	ci right 2.233152e-03	k: 1464	n:690000
Cons ci ratio: 8.466617e-02	ci left: 2.965941e-03	ci right 3.229563e-03	k: 2136	n:690000
KS ci ratio: 3.187253e-02	ci left: 2.111016e-02	ci right 2.179532e-02	k: 14801	n:690000
ERBB2   690000 perm   347 sec   (1988 perm/sec)   p_kst 2.145072e-02   p_cons 3.095652e-03   p_joint 2.121739e-03

Joint ci ratio: 1.034831e-01	ci left: 1.939827e-03	ci right 2.152899e-03	k: 1431	n:700000
Cons ci ratio: 8.419513e-02	ci left: 2.957131e-03	ci right 3.218436e-03	k: 2160	n:700000
KS ci ratio: 3.163601e-02	ci left: 2.112321e-02	ci right 2.180361e-02	k: 15023	n:700000
ERBB2   700000 perm   355 sec   (1973 perm/sec)   p_kst 2.146143e-02   p_cons 3.085714e-03   p_joint 2.044286e-03

Joint ci ratio: 1.031962e-01	ci left: 1.923481e-03	ci right 2.134136e-03	k: 1439	n:710000
Cons ci ratio: 8.357852e-02	ci left: 2.959607e-03	ci right 3.219122e-03	k: 2192	n:710000
KS ci ratio: 3.139625e-02	ci left: 2.114710e-02	ci right 2.182301e-02	k: 15253	n:710000
ERBB2   710000 perm   362 sec   (1959 perm/sec)   p_kst 2.148310e-02   p_cons 3.087324e-03   p_joint 2.026761e-03

Joint ci ratio: 1.025574e-01	ci left: 1.921123e-03	ci right 2.130138e-03	k: 1457	n:720000
Cons ci ratio: 8.291922e-02	ci left: 2.966100e-03	ci right 3.224034e-03	k: 2227	n:720000
KS ci ratio: 3.117833e-02	ci left: 2.114829e-02	ci right 2.181946e-02	k: 15467	n:720000
ERBB2   720000 perm   371 sec   (1943 perm/sec)   p_kst 2.148194e-02   p_cons 3.093056e-03   p_joint 2.023611e-03

Joint ci ratio: 1.035237e-01	ci left: 1.858770e-03	ci right 2.063023e-03	k: 1430	n:730000
Cons ci ratio: 8.231176e-02	ci left: 2.969741e-03	ci right 3.226008e-03	k: 2260	n:730000
KS ci ratio: 3.096085e-02	ci left: 2.115489e-02	ci right 2.182151e-02	k: 15685	n:730000
ERBB2   730000 perm   379 sec   (1929 perm/sec)   p_kst 2.148630e-02   p_cons 3.095890e-03   p_joint 1.958904e-03

Joint ci ratio: 1.067898e-01	ci left: 1.720484e-03	ci right 1.915881e-03	k: 1344	n:740000
Cons ci ratio: 8.187873e-02	ci left: 2.961375e-03	ci right 3.215512e-03	k: 2284	n:740000
KS ci ratio: 3.073009e-02	ci left: 2.118548e-02	ci right 2.184800e-02	k: 15921	n:740000
ERBB2   740000 perm   387 sec   (1915 perm/sec)   p_kst 2.151486e-02   p_cons 3.086486e-03   p_joint 1.816216e-03

Joint ci ratio: 1.063562e-01	ci left: 1.711820e-03	ci right 1.905394e-03	k: 1355	n:750000
Cons ci ratio: 8.131130e-02	ci left: 2.963686e-03	ci right 3.216176e-03	k: 2316	n:750000
KS ci ratio: 3.054017e-02	ci left: 2.116631e-02	ci right 2.182406e-02	k: 16120	n:750000
ERBB2   750000 perm   395 sec   (1900 perm/sec)   p_kst 2.149333e-02   p_cons 3.088000e-03   p_joint 1.806667e-03

Joint ci ratio: 1.066732e-01	ci left: 1.679049e-03	ci right 1.869518e-03	k: 1347	n:760000
Cons ci ratio: 8.080727e-02	ci left: 2.962075e-03	ci right 3.212789e-03	k: 2345	n:760000
KS ci ratio: 3.031957e-02	ci left: 2.119466e-02	ci right 2.184846e-02	k: 16355	n:760000
ERBB2   760000 perm   403 sec   (1887 perm/sec)   p_kst 2.151974e-02   p_cons 3.085526e-03   p_joint 1.772368e-03

Joint ci ratio: 1.085875e-01	ci left: 1.597843e-03	ci right 1.782561e-03	k: 1300	n:770000
Cons ci ratio: 8.029555e-02	ci left: 2.961782e-03	ci right 3.210810e-03	k: 2375	n:770000
KS ci ratio: 3.011203e-02	ci left: 2.121070e-02	ci right 2.186044e-02	k: 16581	n:770000
ERBB2   770000 perm   411 sec   (1873 perm/sec)   p_kst 2.153377e-02   p_cons 3.084416e-03   p_joint 1.688312e-03

Joint ci ratio: 1.077622e-01	ci left: 1.602306e-03	ci right 1.786042e-03	k: 1320	n:780000
Cons ci ratio: 7.986005e-02	ci left: 2.956476e-03	ci right 3.203647e-03	k: 2401	n:780000
KS ci ratio: 2.991415e-02	ci left: 2.121870e-02	ci right 2.186434e-02	k: 16801	n:780000
ERBB2   780000 perm   419 sec   (1860 perm/sec)   p_kst 2.153974e-02   p_cons 3.078205e-03   p_joint 1.692308e-03

Joint ci ratio: 1.098228e-01	ci left: 1.521682e-03	ci right 1.699726e-03	k: 1271	n:790000
Cons ci ratio: 7.944796e-02	ci left: 2.950067e-03	ci right 3.195371e-03	k: 2426	n:790000
KS ci ratio: 2.974960e-02	ci left: 2.118505e-02	ci right 2.182606e-02	k: 16988	n:790000
ERBB2   790000 perm   428 sec   (1847 perm/sec)   p_kst 2.150380e-02   p_cons 3.070886e-03   p_joint 1.608861e-03

Joint ci ratio: 1.097375e-01	ci left: 1.505092e-03	ci right 1.681049e-03	k: 1273	n:800000
Cons ci ratio: 7.889709e-02	ci left: 2.954850e-03	ci right 3.198770e-03	k: 2460	n:800000
KS ci ratio: 2.957103e-02	ci left: 2.117583e-02	ci right 2.181264e-02	k: 17194	n:800000
ERBB2   800000 perm   436 sec   (1834 perm/sec)   p_kst 2.149250e-02   p_cons 3.075000e-03   p_joint 1.591250e-03

Joint ci ratio: 1.116417e-01	ci left: 1.434891e-03	ci right 1.605743e-03	k: 1230	n:810000
Cons ci ratio: 7.832603e-02	ci left: 2.961942e-03	ci right 3.204596e-03	k: 2496	n:810000
KS ci ratio: 2.938960e-02	ci left: 2.117542e-02	ci right 2.180825e-02	k: 17407	n:810000
ERBB2   810000 perm   445 sec   (1821 perm/sec)   p_kst 2.149012e-02   p_cons 3.081481e-03   p_joint 1.518519e-03

Joint ci ratio: 1.110123e-01	ci left: 1.433990e-03	ci right 1.603709e-03	k: 1244	n:820000
Cons ci ratio: 7.769031e-02	ci left: 2.974846e-03	ci right 3.216490e-03	k: 2537	n:820000
KS ci ratio: 2.921147e-02	ci left: 2.117504e-02	ci right 2.180396e-02	k: 17620	n:820000
ERBB2   820000 perm   453 sec   (1809 perm/sec)   p_kst 2.148780e-02   p_cons 3.093902e-03   p_joint 1.517073e-03

Joint ci ratio: 1.102182e-01	ci left: 1.437800e-03	ci right 1.606674e-03	k: 1262	n:830000
Cons ci ratio: 7.714487e-02	ci left: 2.981539e-03	ci right 3.221950e-03	k: 2573	n:830000
KS ci ratio: 2.905152e-02	ci left: 2.115314e-02	ci right 2.177792e-02	k: 17815	n:830000
ERBB2   830000 perm   462 sec   (1797 perm/sec)   p_kst 2.146386e-02   p_cons 3.100000e-03   p_joint 1.520482e-03

Joint ci ratio: 1.095266e-01	ci left: 1.439207e-03	ci right 1.607118e-03	k: 1278	n:840000
Cons ci ratio: 7.656664e-02	ci left: 2.991581e-03	ci right 3.230913e-03	k: 2612	n:840000
KS ci ratio: 2.888680e-02	ci left: 2.114241e-02	ci right 2.176327e-02	k: 18019	n:840000
ERBB2   840000 perm   471 sec   (1784 perm/sec)   p_kst 2.145119e-02   p_cons 3.109524e-03   p_joint 1.521429e-03

Joint ci ratio: 1.086799e-01	ci left: 1.445163e-03	ci right 1.612381e-03	k: 1298	n:850000
Cons ci ratio: 7.607318e-02	ci left: 2.995623e-03	ci right 3.233665e-03	k: 2646	n:850000
KS ci ratio: 2.871036e-02	ci left: 2.115298e-02	ci right 2.177029e-02	k: 18241	n:850000
ERBB2   850000 perm   480 sec   (1772 perm/sec)   p_kst 2.146000e-02   p_cons 3.112941e-03   p_joint 1.527059e-03

Joint ci ratio: 1.079345e-01	ci left: 1.448722e-03	ci right 1.615130e-03	k: 1316	n:860000
Cons ci ratio: 7.561744e-02	ci left: 2.997294e-03	ci right 3.233980e-03	k: 2678	n:860000
KS ci ratio: 2.854501e-02	ci left: 2.115176e-02	ci right 2.176542e-02	k: 18453	n:860000
ERBB2   860000 perm   488 sec   (1761 perm/sec)   p_kst 2.145698e-02   p_cons 3.113953e-03   p_joint 1.530233e-03

Joint ci ratio: 1.072847e-01	ci left: 1.449966e-03	ci right 1.615450e-03	k: 1332	n:870000
Cons ci ratio: 7.526733e-02	ci left: 2.991035e-03	ci right 3.226085e-03	k: 2703	n:870000
KS ci ratio: 2.838793e-02	ci left: 2.114259e-02	ci right 2.175256e-02	k: 18658	n:870000
ERBB2   870000 perm   497 sec   (1749 perm/sec)   p_kst 2.144598e-02   p_cons 3.106897e-03   p_joint 1.531034e-03

Joint ci ratio: 1.067655e-01	ci left: 1.447866e-03	ci right 1.612261e-03	k: 1345	n:880000
Cons ci ratio: 7.485329e-02	ci left: 2.990497e-03	ci right 3.224156e-03	k: 2733	n:880000
KS ci ratio: 2.822807e-02	ci left: 2.114154e-02	ci right 2.174798e-02	k: 18870	n:880000
ERBB2   880000 perm   506 sec   (1738 perm/sec)   p_kst 2.144318e-02   p_cons 3.105682e-03   p_joint 1.528409e-03

Joint ci ratio: 1.063321e-01	ci left: 1.443628e-03	ci right 1.606835e-03	k: 1356	n:890000
Cons ci ratio: 7.456788e-02	ci left: 2.980050e-03	ci right 3.211966e-03	k: 2754	n:890000
KS ci ratio: 2.808366e-02	ci left: 2.112155e-02	ci right 2.172427e-02	k: 19065	n:890000
ERBB2   890000 perm   515 sec   (1727 perm/sec)   p_kst 2.142135e-02   p_cons 3.094382e-03   p_joint 1.523596e-03

Joint ci ratio: 1.058266e-01	ci left: 1.441649e-03	ci right 1.603809e-03	k: 1369	n:900000
Cons ci ratio: 7.417857e-02	ci left: 2.978562e-03	ci right 3.209099e-03	k: 2783	n:900000
KS ci ratio: 2.792811e-02	ci left: 2.112187e-02	ci right 2.172121e-02	k: 19278	n:900000
ERBB2   900000 perm   525 sec   (1716 perm/sec)   p_kst 2.142000e-02   p_cons 3.092222e-03   p_joint 1.521111e-03

Joint ci ratio: 1.052520e-01	ci left: 1.441855e-03	ci right 1.603103e-03	k: 1384	n:910000
Cons ci ratio: 7.380846e-02	ci left: 2.976030e-03	ci right 3.205173e-03	k: 2811	n:910000
KS ci ratio: 2.777075e-02	ci left: 2.112875e-02	ci right 2.172485e-02	k: 19497	n:910000
ERBB2   910000 perm   534 sec   (1705 perm/sec)   p_kst 2.142527e-02   p_cons 3.089011e-03   p_joint 1.520879e-03

Joint ci ratio: 1.047241e-01	ci left: 1.441000e-03	ci right 1.601295e-03	k: 1398	n:920000
Cons ci ratio: 7.328867e-02	ci left: 2.986361e-03	ci right 3.214611e-03	k: 2851	n:920000
KS ci ratio: 2.762031e-02	ci left: 2.112901e-02	ci right 2.172184e-02	k: 19710	n:920000
ERBB2   920000 perm   543 sec   (1694 perm/sec)   p_kst 2.142391e-02   p_cons 3.098913e-03   p_joint 1.519565e-03

Joint ci ratio: 1.043521e-01	ci left: 1.435977e-03	ci right 1.595110e-03	k: 1408	n:930000
Cons ci ratio: 7.291896e-02	ci left: 2.984862e-03	ci right 3.211799e-03	k: 2880	n:930000
KS ci ratio: 2.743994e-02	ci left: 2.117840e-02	ci right 2.176867e-02	k: 19969	n:930000
ERBB2   930000 perm   552 sec   (1684 perm/sec)   p_kst 2.147204e-02   p_cons 3.096774e-03   p_joint 1.513978e-03

Joint ci ratio: 1.036917e-01	ci left: 1.439352e-03	ci right 1.597788e-03	k: 1426	n:940000
Cons ci ratio: 7.259233e-02	ci left: 2.980264e-03	ci right 3.205794e-03	k: 2906	n:940000
KS ci ratio: 2.730655e-02	ci left: 2.116018e-02	ci right 2.174703e-02	k: 20165	n:940000
ERBB2   940000 perm   562 sec   (1673 perm/sec)   p_kst 2.145213e-02   p_cons 3.091489e-03   p_joint 1.517021e-03

Joint ci ratio: 1.029367e-01	ci left: 1.445735e-03	ci right 1.603645e-03	k: 1447	n:950000
Cons ci ratio: 7.213449e-02	ci left: 2.987136e-03	ci right 3.211700e-03	k: 2943	n:950000
KS ci ratio: 2.717099e-02	ci left: 2.114862e-02	ci right 2.173220e-02	k: 20367	n:950000
ERBB2   950000 perm   571 sec   (1662 perm/sec)   p_kst 2.143895e-02   p_cons 3.097895e-03   p_joint 1.523158e-03

Joint ci ratio: 1.024427e-01	ci left: 1.444884e-03	ci right 1.601898e-03	k: 1461	n:960000
Cons ci ratio: 7.170934e-02	ci left: 2.991823e-03	ci right 3.215358e-03	k: 2978	n:960000
KS ci ratio: 2.703809e-02	ci left: 2.113628e-02	ci right 2.171662e-02	k: 20568	n:960000
ERBB2   960000 perm   581 sec   (1652 perm/sec)   p_kst 2.142500e-02   p_cons 3.102083e-03   p_joint 1.521875e-03

Joint ci ratio: 1.018177e-01	ci left: 1.448071e-03	ci right 1.604414e-03	k: 1479	n:970000
Cons ci ratio: 7.133912e-02	ci left: 2.992367e-03	ci right 3.214741e-03	k: 3009	n:970000
KS ci ratio: 2.690184e-02	ci left: 2.113239e-02	ci right 2.170965e-02	k: 20777	n:970000
ERBB2   970000 perm   591 sec   (1642 perm/sec)   p_kst 2.141959e-02   p_cons 3.102062e-03   p_joint 1.524742e-03

Joint ci ratio: 1.013736e-01	ci left: 1.446223e-03	ci right 1.601645e-03	k: 1492	n:980000
Cons ci ratio: 7.086945e-02	ci left: 3.001924e-03	ci right 3.223478e-03	k: 3049	n:980000
KS ci ratio: 2.676763e-02	ci left: 2.112858e-02	ci right 2.170282e-02	k: 20986	n:980000
ERBB2   980000 perm   601 sec   (1632 perm/sec)   p_kst 2.141429e-02   p_cons 3.111224e-03   p_joint 1.522449e-03

Joint ci ratio: 1.007011e-01	ci left: 1.451306e-03	ci right 1.606179e-03	k: 1512	n:990000
Cons ci ratio: 7.063863e-02	ci left: 2.991445e-03	ci right 3.211478e-03	k: 3069	n:990000
KS ci ratio: 2.662578e-02	ci left: 2.113992e-02	ci right 2.171137e-02	k: 21210	n:990000
ERBB2   990000 perm   611 sec   (1622 perm/sec)   p_kst 2.142424e-02   p_cons 3.100000e-03   p_joint 1.527273e-03

Joint ci ratio: 1.001073e-01	ci left: 1.454341e-03	ci right 1.608569e-03	k: 1530	n:1000000
Cons ci ratio: 7.013734e-02	ci left: 3.004757e-03	ci right 3.224137e-03	k: 3113	n:1000000
KS ci ratio: 2.649437e-02	ci left: 2.113812e-02	ci right 2.170666e-02	k: 21421	n:1000000
ERBB2   1000000 perm   620 sec   (1612 perm/sec)   p_kst 2.142100e-02   p_cons 3.113000e-03   p_joint 1.530000e-03

Joint ci ratio: 9.945949e-02	ci left: 1.459250e-03	ci right 1.612938e-03	k: 1550	n:1010000
Cons ci ratio: 6.979082e-02	ci left: 3.005163e-03	ci right 3.223445e-03	k: 3144	n:1010000
KS ci ratio: 2.634436e-02	ci left: 2.116882e-02	ci right 2.173492e-02	k: 21665	n:1010000
ERBB2   1010000 perm   630 sec   (1602 perm/sec)   p_kst 2.145050e-02   p_cons 3.112871e-03   p_joint 1.534653e-03

Outputting figure to mutsig2_images.part000000000058/ERBB2.10_3876_1010000_0.02145_0.0031129_0.0015347.png
                gene_name: ERBB2
               theta_stop: 0.099 
                    nperm: 1010000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.0031 
      ci_cons_bounds_left: 0.0030 
     ci_cons_bounds_right: 0.0032 
                  p_joint: 0.0015 
     ci_joint_bounds_left: 0.0015 
    ci_joint_bounds_right: 0.0016 

Current progress: 12 percent done.
ERC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.019906e-02	ci left: 7.820857e-01	ci right 7.981449e-01	k: 7902	n:10000
Cons ci ratio: 9.131878e-03	ci left: 9.440897e-01	ci right 9.528467e-01	k: 9486	n:10000
KS ci ratio: 3.054934e-02	ci left: 6.125124e-01	ci right 6.316164e-01	k: 6221	n:10000
ERC2   10000 perm   2 sec   (4977 perm/sec)   p_kst 6.221000e-01   p_cons 9.486000e-01   p_joint 7.902000e-01

Outputting figure to mutsig2_images.part000000000058/ERC2.10_2928_10000_0.6221_0.9486_0.7902.png
                gene_name: ERC2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 14 percent done.
ERN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.655002e-02	ci left: 6.762965e-01	ci right 6.945953e-01	k: 6855	n:10000
Cons ci ratio: 4.517969e-02	ci left: 4.196701e-01	ci right 4.391710e-01	k: 4294	n:10000
KS ci ratio: 2.387550e-02	ci left: 7.205765e-01	ci right 7.380897e-01	k: 7294	n:10000
ERN2   10000 perm   2 sec   (5142 perm/sec)   p_kst 7.294000e-01   p_cons 4.294000e-01   p_joint 6.855000e-01

Outputting figure to mutsig2_images.part000000000058/ERN2.10_3013_10000_0.7294_0.4294_0.6855.png
                gene_name: ERN2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 15 percent done.
ESPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.863415e-02	ci left: 8.079591e-01	ci right 8.232566e-01	k: 8157	n:10000
Cons ci ratio: 1.754707e-02	ci left: 8.256448e-01	ci right 8.403607e-01	k: 8331	n:10000
KS ci ratio: 4.279990e-02	ci left: 4.463020e-01	ci right 4.659236e-01	k: 4561	n:10000
ESPL1   10000 perm   3 sec   (3911 perm/sec)   p_kst 4.561000e-01   p_cons 8.331000e-01   p_joint 8.157000e-01

Outputting figure to mutsig2_images.part000000000058/ESPL1.8_6483_10000_0.4561_0.8331_0.8157.png
                gene_name: ESPL1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 17 percent done.
ETAA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.550376e-02	ci left: 3.234649e-01	ci right 3.420327e-01	k: 3327	n:10000
Cons ci ratio: 7.936649e-02	ci left: 1.882589e-01	ci right 2.039185e-01	k: 1960	n:10000
KS ci ratio: 4.220959e-02	ci left: 4.531890e-01	ci right 4.728325e-01	k: 4630	n:10000
ETAA1   10000 perm   2 sec   (5226 perm/sec)   p_kst 4.630000e-01   p_cons 1.960000e-01   p_joint 3.327000e-01

Outputting figure to mutsig2_images.part000000000058/ETAA1.8_2805_10000_0.463_0.196_0.3327.png
                gene_name: ETAA1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 18 percent done.
EVC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.937825e-02	ci left: 6.308041e-01	ci right 6.497141e-01	k: 6403	n:10000
Cons ci ratio: 1.255649e-02	ci left: 9.011385e-01	ci right 9.126232e-01	k: 9070	n:10000
KS ci ratio: 4.604759e-02	ci left: 4.104006e-01	ci right 4.298460e-01	k: 4201	n:10000
EVC   10000 perm   2 sec   (5092 perm/sec)   p_kst 4.201000e-01   p_cons 9.070000e-01   p_joint 6.403000e-01

Outputting figure to mutsig2_images.part000000000058/EVC.8_3063_10000_0.4201_0.907_0.6403.png
                gene_name: EVC
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 20 percent done.
ERBB2IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.376300e-02	ci left: 3.376659e-01	ci right 3.564232e-01	k: 3470	n:10000
Cons ci ratio: 7.361654e-02	ci left: 2.127026e-01	ci right 2.290604e-01	k: 2208	n:10000
KS ci ratio: 4.533675e-02	ci left: 4.179754e-01	ci right 4.374667e-01	k: 4277	n:10000
ERBB2IP   10000 perm   2 sec   (4823 perm/sec)   p_kst 4.277000e-01   p_cons 2.208000e-01   p_joint 3.470000e-01

Outputting figure to mutsig2_images.part000000000058/ERBB2IP.7_4208_10000_0.4277_0.2208_0.347.png
                gene_name: ERBB2IP
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 22 percent done.
ERCC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.878267e-02	ci left: 8.055218e-01	ci right 8.208953e-01	k: 8133	n:10000
Cons ci ratio: 1.646289e-02	ci left: 8.429516e-01	ci right 8.570439e-01	k: 8501	n:10000
KS ci ratio: 3.289058e-02	ci left: 5.770748e-01	ci right 5.964746e-01	k: 5868	n:10000
ERCC3   10000 perm   2 sec   (5534 perm/sec)   p_kst 5.868000e-01   p_cons 8.501000e-01   p_joint 8.133000e-01

Outputting figure to mutsig2_images.part000000000058/ERCC3.7_2409_10000_0.5868_0.8501_0.8133.png
                gene_name: ERCC3
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 23 percent done.
ERO1LB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.480849e-02	ci left: 7.050317e-01	ci right 7.228435e-01	k: 7140	n:10000
Cons ci ratio: 4.369047e-02	ci left: 4.361247e-01	ci right 4.557069e-01	k: 4459	n:10000
KS ci ratio: 1.749659e-02	ci left: 8.264586e-01	ci right 8.411464e-01	k: 8339	n:10000
ERO1LB   10000 perm   2 sec   (5449 perm/sec)   p_kst 8.339000e-01   p_cons 4.459000e-01   p_joint 7.140000e-01

Outputting figure to mutsig2_images.part000000000058/ERO1LB.7_1468_10000_0.8339_0.4459_0.714.png
                gene_name: ERO1LB
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 25 percent done.
ESF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.980043e-02	ci left: 6.241692e-01	ci right 6.431529e-01	k: 6337	n:10000
Cons ci ratio: 1.979647e-02	ci left: 7.887776e-01	ci right 8.046492e-01	k: 7968	n:10000
KS ci ratio: 4.825167e-02	ci left: 3.878893e-01	ci right 4.071704e-01	k: 3975	n:10000
ESF1   10000 perm   2 sec   (4645 perm/sec)   p_kst 3.975000e-01   p_cons 7.968000e-01   p_joint 6.337000e-01

Outputting figure to mutsig2_images.part000000000058/ESF1.7_2608_10000_0.3975_0.7968_0.6337.png
                gene_name: ESF1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 26 percent done.
ERC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.062157e-02	ci left: 1.834349e-01	ci right 1.989455e-01	k: 1911	n:10000
Cons ci ratio: 1.757859e-02	ci left: 8.251362e-01	ci right 8.398695e-01	k: 8326	n:10000
KS ci ratio: 1.159911e-01	ci left: 9.652432e-02	ci right 1.085084e-01	k: 1024	n:10000
ERC1   10000 perm   2 sec   (4547 perm/sec)   p_kst 1.024000e-01   p_cons 8.326000e-01   p_joint 1.911000e-01

Joint ci ratio: 5.060209e-02	ci left: 2.249255e-01	ci right 2.366529e-01	k: 4615	n:20000
Cons ci ratio: 1.234460e-02	ci left: 8.292760e-01	ci right 8.396266e-01	k: 16690	n:20000
KS ci ratio: 7.874221e-02	ci left: 1.058921e-01	ci right 1.146216e-01	k: 2204	n:20000
ERC1   20000 perm   5 sec   (4116 perm/sec)   p_kst 1.102000e-01   p_cons 8.345000e-01   p_joint 2.307500e-01

Outputting figure to mutsig2_images.part000000000058/ERC1.6_3423_20000_0.1102_0.8345_0.23075.png
                gene_name: ERC1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 28 percent done.
ERCC6L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.362898e-01	ci left: 7.117069e-02	ci right 8.167765e-02	k: 763	n:10000
Cons ci ratio: 3.788368e-02	ci left: 5.071521e-01	ci right 5.268380e-01	k: 5170	n:10000
KS ci ratio: 2.963012e-01	ci left: 1.465041e-02	ci right 1.983629e-02	k: 171	n:10000
ERCC6L   10000 perm   2 sec   (4793 perm/sec)   p_kst 1.710000e-02   p_cons 5.170000e-01   p_joint 7.630000e-02

Joint ci ratio: 1.086552e-01	ci left: 5.777083e-02	ci right 6.445747e-02	k: 1221	n:20000
Cons ci ratio: 2.665862e-02	ci left: 5.124983e-01	ci right 5.263960e-01	k: 10389	n:20000
KS ci ratio: 2.104574e-01	ci left: 1.525391e-02	ci right 1.888845e-02	k: 340	n:20000
ERCC6L   20000 perm   5 sec   (4272 perm/sec)   p_kst 1.700000e-02   p_cons 5.194500e-01   p_joint 6.105000e-02

Joint ci ratio: 9.522378e-02	ci left: 5.091512e-02	ci right 5.603846e-02	k: 1603	n:30000
Cons ci ratio: 2.173741e-02	ci left: 5.144616e-01	ci right 5.258012e-01	k: 15604	n:30000
KS ci ratio: 1.731349e-01	ci left: 1.534403e-02	ci right 1.828395e-02	k: 503	n:30000
ERCC6L   30000 perm   7 sec   (4077 perm/sec)   p_kst 1.676667e-02   p_cons 5.201333e-01   p_joint 5.343333e-02

Joint ci ratio: 9.851486e-02	ci left: 3.619623e-02	ci right 3.997121e-02	k: 1522	n:40000
Cons ci ratio: 1.873820e-02	ci left: 5.175411e-01	ci right 5.273557e-01	k: 20898	n:40000
KS ci ratio: 1.508558e-01	ci left: 1.534652e-02	ci right 1.787436e-02	k: 663	n:40000
ERCC6L   40000 perm   10 sec   (3966 perm/sec)   p_kst 1.657500e-02   p_cons 5.224500e-01   p_joint 3.805000e-02

Joint ci ratio: 1.090321e-01	ci left: 2.382436e-02	ci right 2.659114e-02	k: 1259	n:50000
Cons ci ratio: 1.672685e-02	ci left: 5.190510e-01	ci right 5.278263e-01	k: 26172	n:50000
KS ci ratio: 1.330672e-01	ci left: 1.592371e-02	ci right 1.821286e-02	k: 852	n:50000
ERCC6L   50000 perm   13 sec   (3890 perm/sec)   p_kst 1.704000e-02   p_cons 5.234400e-01   p_joint 2.518000e-02

Joint ci ratio: 6.716814e-02	ci left: 5.190955e-02	ci right 5.553377e-02	k: 3222	n:60000
Cons ci ratio: 1.522592e-02	ci left: 5.208614e-01	ci right 5.288695e-01	k: 31492	n:60000
KS ci ratio: 1.159803e-01	ci left: 1.759870e-02	ci right 1.978154e-02	k: 1120	n:60000
ERCC6L   60000 perm   16 sec   (3808 perm/sec)   p_kst 1.866667e-02   p_cons 5.248667e-01   p_joint 5.370000e-02

Joint ci ratio: 6.249511e-02	ci left: 5.154882e-02	ci right 5.488834e-02	k: 3724	n:70000
Cons ci ratio: 1.411092e-02	ci left: 5.206495e-01	ci right 5.280628e-01	k: 36705	n:70000
KS ci ratio: 1.075798e-01	ci left: 1.761198e-02	ci right 1.962821e-02	k: 1302	n:70000
ERCC6L   70000 perm   19 sec   (3760 perm/sec)   p_kst 1.860000e-02   p_cons 5.243571e-01   p_joint 5.320000e-02

Joint ci ratio: 6.266139e-02	ci left: 4.517423e-02	ci right 4.810876e-02	k: 3730	n:80000
Cons ci ratio: 1.345000e-02	ci left: 5.115051e-01	ci right 5.184439e-01	k: 41198	n:80000
KS ci ratio: 1.006367e-01	ci left: 1.767501e-02	ci right 1.956013e-02	k: 1488	n:80000
ERCC6L   80000 perm   22 sec   (3714 perm/sec)   p_kst 1.860000e-02   p_cons 5.149750e-01   p_joint 4.662500e-02

Joint ci ratio: 5.943041e-02	ci left: 4.473907e-02	ci right 4.749028e-02	k: 4149	n:90000
Cons ci ratio: 1.268610e-02	ci left: 5.114955e-01	ci right 5.180369e-01	k: 46329	n:90000
KS ci ratio: 9.403042e-02	ci left: 1.805290e-02	ci right 1.984496e-02	k: 1704	n:90000
ERCC6L   90000 perm   25 sec   (3671 perm/sec)   p_kst 1.893333e-02   p_cons 5.147667e-01   p_joint 4.610000e-02

Outputting figure to mutsig2_images.part000000000058/ERCC6L.6_3761_90000_0.018933_0.51477_0.0461.png
                gene_name: ERCC6L
               theta_stop: 0.094 
                    nperm: 90000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.047 

Current progress: 29 percent done.
ERMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.768235e-02	ci left: 3.935649e-01	ci right 4.128915e-01	k: 4032	n:10000
Cons ci ratio: 7.465850e-02	ci left: 2.079681e-01	ci right 2.241977e-01	k: 2160	n:10000
KS ci ratio: 2.472956e-02	ci left: 7.063434e-01	ci right 7.241310e-01	k: 7153	n:10000
ERMP1   10000 perm   2 sec   (5699 perm/sec)   p_kst 7.153000e-01   p_cons 2.160000e-01   p_joint 4.032000e-01

Outputting figure to mutsig2_images.part000000000058/ERMP1.6_2775_10000_0.7153_0.216_0.4032.png
                gene_name: ERMP1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 31 percent done.
ESRRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.893690e-02	ci left: 2.975703e-01	ci right 3.157424e-01	k: 3066	n:10000
Cons ci ratio: 1.082627e-01	ci left: 1.095910e-01	ci right 1.222338e-01	k: 1158	n:10000
KS ci ratio: 3.673940e-02	ci left: 5.224624e-01	ci right 5.421187e-01	k: 5323	n:10000
ESRRG   10000 perm   2 sec   (5932 perm/sec)   p_kst 5.323000e-01   p_cons 1.158000e-01   p_joint 3.066000e-01

Joint ci ratio: 3.934006e-02	ci left: 3.251747e-01	ci right 3.382743e-01	k: 6634	n:20000
Cons ci ratio: 7.769665e-02	ci left: 1.084964e-01	ci right 1.173165e-01	k: 2257	n:20000
KS ci ratio: 2.642728e-02	ci left: 5.168503e-01	ci right 5.307428e-01	k: 10476	n:20000
ESRRG   20000 perm   4 sec   (5284 perm/sec)   p_kst 5.238000e-01   p_cons 1.128500e-01   p_joint 3.317000e-01

Outputting figure to mutsig2_images.part000000000058/ESRRG.6_1405_20000_0.5238_0.11285_0.3317.png
                gene_name: ESRRG
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 32 percent done.
ESX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.429577e-03	ci left: 9.906076e-01	ci right 9.940963e-01	k: 9925	n:10000
KS ci ratio: 2.239646e-02	ci left: 7.453345e-01	ci right 7.623174e-01	k: 7539	n:10000
ESX1   10000 perm   2 sec   (5887 perm/sec)   p_kst 7.539000e-01   p_cons 9.925000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ESX1.6_1237_10000_0.7539_0.9925_1.png
                gene_name: ESX1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
ESYT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.800946e-02	ci left: 1.311004e-01	ci right 1.447113e-01	k: 1378	n:10000
Cons ci ratio: 1.799927e-02	ci left: 8.183233e-01	ci right 8.332864e-01	k: 8259	n:10000
KS ci ratio: 1.651998e-01	ci left: 4.888186e-02	ci right 5.778061e-02	k: 532	n:10000
ESYT3   10000 perm   2 sec   (5593 perm/sec)   p_kst 5.320000e-02   p_cons 8.259000e-01   p_joint 1.378000e-01

Joint ci ratio: 7.384239e-02	ci left: 1.189210e-01	ci right 1.280888e-01	k: 2469	n:20000
Cons ci ratio: 1.263169e-02	ci left: 8.227479e-01	ci right 8.332566e-01	k: 16561	n:20000
KS ci ratio: 1.159005e-01	ci left: 5.095625e-02	ci right 5.727417e-02	k: 1081	n:20000
ESYT3   20000 perm   4 sec   (4981 perm/sec)   p_kst 5.405000e-02   p_cons 8.280500e-01   p_joint 1.234500e-01

Joint ci ratio: 6.850609e-02	ci left: 9.501903e-02	ci right 1.017923e-01	k: 2951	n:30000
Cons ci ratio: 1.060627e-02	ci left: 8.155377e-01	ci right 8.242669e-01	k: 24598	n:30000
KS ci ratio: 9.534945e-02	ci left: 5.078479e-02	ci right 5.590214e-02	k: 1599	n:30000
ESYT3   30000 perm   6 sec   (4740 perm/sec)   p_kst 5.330000e-02   p_cons 8.199333e-01   p_joint 9.836667e-02

Outputting figure to mutsig2_images.part000000000058/ESYT3.6_2753_30000_0.0533_0.81993_0.098367.png
                gene_name: ESYT3
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 35 percent done.
ETV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.293718e-02	ci left: 2.706208e-01	ci right 2.883078e-01	k: 2794	n:10000
Cons ci ratio: 8.355196e-02	ci left: 1.728091e-01	ci right 1.879776e-01	k: 1803	n:10000
KS ci ratio: 6.321963e-02	ci left: 2.688388e-01	ci right 2.864909e-01	k: 2776	n:10000
ETV1   10000 perm   2 sec   (5779 perm/sec)   p_kst 2.776000e-01   p_cons 1.803000e-01   p_joint 2.794000e-01

Outputting figure to mutsig2_images.part000000000058/ETV1.6_1547_10000_0.2776_0.1803_0.2794.png
                gene_name: ETV1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 37 percent done.
ETV5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.814236e-02	ci left: 5.037510e-01	ci right 5.234410e-01	k: 5136	n:10000
Cons ci ratio: 8.315853e-02	ci left: 1.741859e-01	ci right 1.893999e-01	k: 1817	n:10000
KS ci ratio: 2.544741e-02	ci left: 6.944402e-01	ci right 7.124411e-01	k: 7035	n:10000
ETV5   10000 perm   2 sec   (5406 perm/sec)   p_kst 7.035000e-01   p_cons 1.817000e-01   p_joint 5.136000e-01

Outputting figure to mutsig2_images.part000000000058/ETV5.6_1581_10000_0.7035_0.1817_0.5136.png
                gene_name: ETV5
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 38 percent done.
EVI5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.671020e-02	ci left: 6.736771e-01	ci right 6.920163e-01	k: 6829	n:10000
Cons ci ratio: 7.134047e-02	ci left: 2.235583e-01	ci right 2.401981e-01	k: 2318	n:10000
KS ci ratio: 8.061926e-03	ci left: 9.554502e-01	ci right 9.632793e-01	k: 9595	n:10000
EVI5   10000 perm   2 sec   (5502 perm/sec)   p_kst 9.595000e-01   p_cons 2.318000e-01   p_joint 6.829000e-01

Outputting figure to mutsig2_images.part000000000058/EVI5.6_2505_10000_0.9595_0.2318_0.6829.png
                gene_name: EVI5
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 40 percent done.
ERAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.649454e-02	ci left: 4.057173e-01	ci right 4.251320e-01	k: 4154	n:10000
Cons ci ratio: 6.599437e-02	ci left: 2.521161e-01	ci right 2.694235e-01	k: 2607	n:10000
KS ci ratio: 5.226699e-02	ci left: 3.504847e-01	ci right 3.693970e-01	k: 3599	n:10000
ERAP2   10000 perm   2 sec   (5388 perm/sec)   p_kst 3.599000e-01   p_cons 2.607000e-01   p_joint 4.154000e-01

Outputting figure to mutsig2_images.part000000000058/ERAP2.5_2955_10000_0.3599_0.2607_0.4154.png
                gene_name: ERAP2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 42 percent done.
ETF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.340926e-02	ci left: 2.676508e-01	ci right 2.852796e-01	k: 2764	n:10000
Cons ci ratio: 2.548400e-02	ci left: 6.938352e-01	ci right 7.118465e-01	k: 7029	n:10000
KS ci ratio: 7.752686e-02	ci left: 1.956464e-01	ci right 2.115267e-01	k: 2035	n:10000
ETF1   10000 perm   2 sec   (6267 perm/sec)   p_kst 2.035000e-01   p_cons 7.029000e-01   p_joint 2.764000e-01

Outputting figure to mutsig2_images.part000000000058/ETF1.5_1354_10000_0.2035_0.7029_0.2764.png
                gene_name: ETF1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 43 percent done.
ETV6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.335644e-01	ci left: 7.398022e-02	ci right 8.466637e-02	k: 792	n:10000
Cons ci ratio: 3.973073e-02	ci left: 4.833543e-01	ci right 5.030497e-01	k: 4932	n:10000
KS ci ratio: 1.932931e-01	ci left: 3.567168e-02	ci right 4.339951e-02	k: 394	n:10000
ETV6   10000 perm   2 sec   (5939 perm/sec)   p_kst 3.940000e-02   p_cons 4.932000e-01   p_joint 7.920000e-02

Joint ci ratio: 1.032693e-01	ci left: 6.371945e-02	ci right 7.070702e-02	k: 1343	n:20000
Cons ci ratio: 2.825947e-02	ci left: 4.833486e-01	ci right 4.972542e-01	k: 9806	n:20000
KS ci ratio: 1.328752e-01	ci left: 3.892294e-02	ci right 4.451129e-02	k: 833	n:20000
ETV6   20000 perm   4 sec   (5266 perm/sec)   p_kst 4.165000e-02   p_cons 4.903000e-01   p_joint 6.715000e-02

Joint ci ratio: 8.383035e-02	ci left: 6.507850e-02	ci right 7.080552e-02	k: 2037	n:30000
Cons ci ratio: 2.331260e-02	ci left: 4.794962e-01	ci right 4.908400e-01	k: 14555	n:30000
KS ci ratio: 1.084026e-01	ci left: 3.949821e-02	ci right 4.405774e-02	k: 1252	n:30000
ETV6   30000 perm   6 sec   (5017 perm/sec)   p_kst 4.173333e-02   p_cons 4.851667e-01   p_joint 6.790000e-02

Joint ci ratio: 7.358237e-02	ci left: 6.380708e-02	ci right 6.870611e-02	k: 2649	n:40000
Cons ci ratio: 2.008646e-02	ci left: 4.828151e-01	ci right 4.926367e-01	k: 19509	n:40000
KS ci ratio: 9.407579e-02	ci left: 3.963964e-02	ci right 4.357726e-02	k: 1663	n:40000
ETV6   40000 perm   8 sec   (4849 perm/sec)   p_kst 4.157500e-02   p_cons 4.877250e-01   p_joint 6.622500e-02

Outputting figure to mutsig2_images.part000000000058/ETV6.5_1391_40000_0.041575_0.48773_0.066225.png
                gene_name: ETV6
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.069 

Current progress: 45 percent done.
EVPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
Cons ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
KS ci ratio: 7.096209e-02	ci left: 2.254342e-01	ci right 2.421211e-01	k: 2337	n:10000
EVPL   10000 perm   2 sec   (4378 perm/sec)   p_kst 2.337000e-01   p_cons 4.100000e-02   p_joint 7.340000e-02

Joint ci ratio: 8.590112e-02	ci left: 9.023491e-02	ci right 9.838348e-02	k: 1885	n:20000
Cons ci ratio: 1.229040e-01	ci left: 4.541801e-02	ci right 5.141416e-02	k: 967	n:20000
KS ci ratio: 5.070205e-02	ci left: 2.242318e-01	ci right 2.359468e-01	k: 4601	n:20000
EVPL   20000 perm   5 sec   (3965 perm/sec)   p_kst 2.300500e-01   p_cons 4.835000e-02   p_joint 9.425000e-02

Joint ci ratio: 8.068853e-02	ci left: 6.998298e-02	ci right 7.590004e-02	k: 2187	n:30000
Cons ci ratio: 1.045841e-01	ci left: 4.238916e-02	ci right 4.709951e-02	k: 1341	n:30000
KS ci ratio: 4.124301e-02	ci left: 2.266373e-01	ci right 2.362148e-01	k: 6942	n:30000
EVPL   30000 perm   8 sec   (3795 perm/sec)   p_kst 2.314000e-01   p_cons 4.470000e-02   p_joint 7.290000e-02

Joint ci ratio: 6.213392e-02	ci left: 8.768111e-02	ci right 9.332850e-02	k: 3619	n:40000
Cons ci ratio: 9.133237e-02	ci left: 4.201077e-02	ci right 4.605576e-02	k: 1760	n:40000
KS ci ratio: 3.593309e-02	ci left: 2.251627e-01	ci right 2.334266e-01	k: 9171	n:40000
EVPL   40000 perm   11 sec   (3596 perm/sec)   p_kst 2.292750e-01   p_cons 4.400000e-02   p_joint 9.047500e-02

Outputting figure to mutsig2_images.part000000000058/EVPL.5_6190_40000_0.22928_0.044_0.090475.png
                gene_name: EVPL
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.093 

Current progress: 46 percent done.
ERCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.214301e-02	ci left: 7.495823e-01	ci right 7.664671e-01	k: 7581	n:10000
Cons ci ratio: 4.695702e-02	ci left: 4.009353e-01	ci right 4.203168e-01	k: 4106	n:10000
KS ci ratio: 1.603451e-02	ci left: 8.496789e-01	ci right 8.635127e-01	k: 8567	n:10000
ERCC2   10000 perm   2 sec   (5346 perm/sec)   p_kst 8.567000e-01   p_cons 4.106000e-01   p_joint 7.581000e-01

Outputting figure to mutsig2_images.part000000000058/ERCC2.4_2432_10000_0.8567_0.4106_0.7581.png
                gene_name: ERCC2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 48 percent done.
ERCC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.410571e-02	ci left: 5.593253e-01	ci right 5.788345e-01	k: 5691	n:10000
Cons ci ratio: 3.121569e-02	ci left: 6.022673e-01	ci right 6.214675e-01	k: 6119	n:10000
KS ci ratio: 6.468518e-02	ci left: 2.598323e-01	ci right 2.773027e-01	k: 2685	n:10000
ERCC4   10000 perm   2 sec   (5408 perm/sec)   p_kst 2.685000e-01   p_cons 6.119000e-01   p_joint 5.691000e-01

Outputting figure to mutsig2_images.part000000000058/ERCC4.4_2795_10000_0.2685_0.6119_0.5691.png
                gene_name: ERCC4
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 49 percent done.
ERI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.408155e-02	ci left: 4.317357e-01	ci right 4.512984e-01	k: 4415	n:10000
Cons ci ratio: 7.660662e-02	ci left: 1.994895e-01	ci right 2.154812e-01	k: 2074	n:10000
KS ci ratio: 2.585051e-02	ci left: 6.877856e-01	ci right 7.058996e-01	k: 6969	n:10000
ERI2   10000 perm   2 sec   (5590 perm/sec)   p_kst 6.969000e-01   p_cons 2.074000e-01   p_joint 4.415000e-01

Outputting figure to mutsig2_images.part000000000058/ERI2.4_2379_10000_0.6969_0.2074_0.4415.png
                gene_name: ERI2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 51 percent done.
ESCO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.637447e-02	ci left: 2.004751e-01	ci right 2.164950e-01	k: 2084	n:10000
Cons ci ratio: 5.574205e-02	ci left: 3.215787e-01	ci right 3.401199e-01	k: 3308	n:10000
KS ci ratio: 1.210554e-01	ci left: 8.912712e-02	ci right 1.007101e-01	k: 948	n:10000
ESCO2   10000 perm   2 sec   (5780 perm/sec)   p_kst 9.480000e-02   p_cons 3.308000e-01   p_joint 2.084000e-01

Joint ci ratio: 7.293562e-02	ci left: 1.215781e-01	ci right 1.308308e-01	k: 2523	n:20000
Cons ci ratio: 3.938002e-02	ci left: 3.247270e-01	ci right 3.378221e-01	k: 6625	n:20000
KS ci ratio: 8.702652e-02	ci left: 8.807791e-02	ci right 9.614113e-02	k: 1841	n:20000
ESCO2   20000 perm   4 sec   (5137 perm/sec)   p_kst 9.205000e-02   p_cons 3.312500e-01   p_joint 1.261500e-01

Outputting figure to mutsig2_images.part000000000058/ESCO2.4_1846_20000_0.09205_0.33125_0.12615.png
                gene_name: ESCO2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 52 percent done.
ERF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
Cons ci ratio: 2.293342e-02	ci left: 7.363367e-01	ci right 7.535204e-01	k: 7450	n:10000
KS ci ratio: 2.723101e-01	ci left: 1.753307e-02	ci right 2.315124e-02	k: 202	n:10000
ERF   10000 perm   2 sec   (6251 perm/sec)   p_kst 2.020000e-02   p_cons 7.450000e-01   p_joint 7.400000e-02

Joint ci ratio: 9.947345e-02	ci left: 6.845501e-02	ci right 7.567000e-02	k: 1440	n:20000
Cons ci ratio: 1.605227e-02	ci left: 7.427788e-01	ci right 7.548488e-01	k: 14977	n:20000
KS ci ratio: 1.940254e-01	ci left: 1.805714e-02	ci right 2.198415e-02	k: 399	n:20000
ERF   20000 perm   4 sec   (5478 perm/sec)   p_kst 1.995000e-02   p_cons 7.488500e-01   p_joint 7.200000e-02

Joint ci ratio: 6.687233e-02	ci left: 9.931964e-02	ci right 1.062242e-01	k: 3082	n:30000
Cons ci ratio: 1.294697e-02	ci left: 7.485150e-01	ci right 7.583026e-01	k: 22603	n:30000
KS ci ratio: 1.633527e-01	ci left: 1.729317e-02	ci right 2.040101e-02	k: 564	n:30000
ERF   30000 perm   6 sec   (5194 perm/sec)   p_kst 1.880000e-02   p_cons 7.534333e-01   p_joint 1.027333e-01

Joint ci ratio: 7.587728e-02	ci left: 6.017172e-02	ci right 6.494203e-02	k: 2501	n:40000
Cons ci ratio: 1.125793e-02	ci left: 7.476618e-01	ci right 7.561516e-01	k: 30077	n:40000
KS ci ratio: 1.434540e-01	ci left: 1.700905e-02	ci right 1.966153e-02	k: 732	n:40000
ERF   40000 perm   8 sec   (5016 perm/sec)   p_kst 1.830000e-02   p_cons 7.519250e-01   p_joint 6.252500e-02

Joint ci ratio: 7.079208e-02	ci left: 5.573089e-02	ci right 5.984064e-02	k: 2888	n:50000
Cons ci ratio: 1.004525e-02	ci left: 7.490143e-01	ci right 7.565963e-01	k: 37641	n:50000
KS ci ratio: 1.286856e-01	ci left: 1.704635e-02	ci right 1.941006e-02	k: 910	n:50000
ERF   50000 perm   10 sec   (4871 perm/sec)   p_kst 1.820000e-02   p_cons 7.528200e-01   p_joint 5.776000e-02

Joint ci ratio: 5.554366e-02	ci left: 7.451704e-02	ci right 7.879068e-02	k: 4598	n:60000
Cons ci ratio: 9.215276e-03	ci left: 7.475027e-01	ci right 7.544397e-01	k: 45059	n:60000
KS ci ratio: 1.178142e-01	ci left: 1.704832e-02	ci right 1.919866e-02	k: 1086	n:60000
ERF   60000 perm   13 sec   (4753 perm/sec)   p_kst 1.810000e-02   p_cons 7.509833e-01   p_joint 7.663333e-02

Joint ci ratio: 4.712460e-02	ci left: 8.783332e-02	ci right 9.208645e-02	k: 6296	n:70000
Cons ci ratio: 8.219989e-03	ci left: 7.614822e-01	ci right 7.677816e-01	k: 53525	n:70000
KS ci ratio: 1.086900e-01	ci left: 1.725042e-02	ci right 1.924694e-02	k: 1276	n:70000
ERF   70000 perm   15 sec   (4647 perm/sec)   p_kst 1.822857e-02   p_cons 7.646429e-01   p_joint 8.994286e-02

Joint ci ratio: 4.597211e-02	ci left: 8.139401e-02	ci right 8.523627e-02	k: 6664	n:80000
Cons ci ratio: 7.982980e-03	ci left: 7.478626e-01	ci right 7.538692e-01	k: 60070	n:80000
KS ci ratio: 1.017210e-01	ci left: 1.729714e-02	ci right 1.916303e-02	k: 1457	n:80000
ERF   80000 perm   18 sec   (4548 perm/sec)   p_kst 1.821250e-02   p_cons 7.508750e-01   p_joint 8.330000e-02

Joint ci ratio: 4.937748e-02	ci left: 6.382621e-02	ci right 6.706853e-02	k: 5889	n:90000
Cons ci ratio: 7.525254e-03	ci left: 7.480943e-01	ci right 7.537562e-01	k: 67584	n:90000
KS ci ratio: 9.558501e-02	ci left: 1.746687e-02	ci right 1.923103e-02	k: 1650	n:90000
ERF   90000 perm   20 sec   (4462 perm/sec)   p_kst 1.833333e-02   p_cons 7.509333e-01   p_joint 6.543333e-02

Outputting figure to mutsig2_images.part000000000058/ERF.3_1663_90000_0.018333_0.75093_0.065433.png
                gene_name: ERF
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.067 

Current progress: 54 percent done.
ERG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.637988e-02	ci left: 4.069129e-01	ci right 4.263357e-01	k: 4166	n:10000
Cons ci ratio: 1.452325e-01	ci left: 6.294902e-02	ci right 7.290448e-02	k: 678	n:10000
KS ci ratio: 4.167040e-02	ci left: 4.595787e-01	ci right 4.792392e-01	k: 4694	n:10000
ERG   10000 perm   2 sec   (6356 perm/sec)   p_kst 4.694000e-01   p_cons 6.780000e-02   p_joint 4.166000e-01

Joint ci ratio: 3.299499e-02	ci left: 4.068624e-01	ci right 4.205627e-01	k: 8274	n:20000
Cons ci ratio: 1.012254e-01	ci left: 6.620866e-02	ci right 7.331704e-02	k: 1394	n:20000
KS ci ratio: 2.952703e-02	ci left: 4.614643e-01	ci right 4.753448e-01	k: 9368	n:20000
ERG   20000 perm   4 sec   (5538 perm/sec)   p_kst 4.684000e-01   p_cons 6.970000e-02   p_joint 4.137000e-01

Joint ci ratio: 2.495542e-02	ci left: 4.456240e-01	ci right 4.569188e-01	k: 13538	n:30000
Cons ci ratio: 8.192707e-02	ci left: 6.798799e-02	ci right 7.382878e-02	k: 2126	n:30000
KS ci ratio: 2.390222e-02	ci left: 4.670367e-01	ci right 4.783686e-01	k: 14181	n:30000
ERG   30000 perm   6 sec   (5239 perm/sec)   p_kst 4.727000e-01   p_cons 7.086667e-02   p_joint 4.512667e-01

Outputting figure to mutsig2_images.part000000000058/ERG.3_1523_30000_0.4727_0.070867_0.45127.png
                gene_name: ERG
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 55 percent done.
ERLEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.008330e-02	ci left: 7.840118e-01	ci right 8.000177e-01	k: 7921	n:10000
Cons ci ratio: 4.851453e-02	ci left: 3.853009e-01	ci right 4.045604e-01	k: 3949	n:10000
KS ci ratio: 2.259555e-02	ci left: 7.419977e-01	ci right 7.590561e-01	k: 7506	n:10000
ERLEC1   10000 perm   2 sec   (6035 perm/sec)   p_kst 7.506000e-01   p_cons 3.949000e-01   p_joint 7.921000e-01

Outputting figure to mutsig2_images.part000000000058/ERLEC1.3_1508_10000_0.7506_0.3949_0.7921.png
                gene_name: ERLEC1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 57 percent done.
ERMAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.882633e-02	ci left: 1.557113e-01	ci right 1.702856e-01	k: 1629	n:10000
Cons ci ratio: 1.221246e-01	ci left: 8.766844e-02	ci right 9.916968e-02	k: 933	n:10000
KS ci ratio: 7.275060e-02	ci left: 2.167479e-01	ci right 2.332127e-01	k: 2249	n:10000
ERMAP   10000 perm   1 sec   (6758 perm/sec)   p_kst 2.249000e-01   p_cons 9.330000e-02   p_joint 1.629000e-01

Joint ci ratio: 7.355390e-02	ci left: 1.197574e-01	ci right 1.289521e-01	k: 2486	n:20000
Cons ci ratio: 8.808395e-02	ci left: 8.611760e-02	ci right 9.410203e-02	k: 1801	n:20000
KS ci ratio: 5.098994e-02	ci left: 2.222499e-01	ci right 2.339292e-01	k: 4561	n:20000
ERMAP   20000 perm   3 sec   (5869 perm/sec)   p_kst 2.280500e-01   p_cons 9.005000e-02   p_joint 1.243000e-01

Outputting figure to mutsig2_images.part000000000058/ERMAP.3_1468_20000_0.22805_0.09005_0.1243.png
                gene_name: ERMAP
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 58 percent done.
ERMN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.154515e-02	ci left: 7.595994e-01	ci right 7.762442e-01	k: 7680	n:10000
Cons ci ratio: 3.253245e-02	ci left: 5.823922e-01	ci right 6.017541e-01	k: 5921	n:10000
KS ci ratio: 2.616291e-02	ci left: 6.826450e-01	ci right 7.008432e-01	k: 6918	n:10000
ERMN   10000 perm   2 sec   (6478 perm/sec)   p_kst 6.918000e-01   p_cons 5.921000e-01   p_joint 7.680000e-01

Outputting figure to mutsig2_images.part000000000058/ERMN.3_910_10000_0.6918_0.5921_0.768.png
                gene_name: ERMN
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 60 percent done.
ERP27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.214337e-02	ci left: 5.882125e-01	ci right 6.075305e-01	k: 5979	n:10000
Cons ci ratio: 3.516762e-02	ci left: 5.441930e-01	ci right 5.637756e-01	k: 5540	n:10000
KS ci ratio: 4.696672e-02	ci left: 4.008357e-01	ci right 4.202165e-01	k: 4105	n:10000
ERP27   10000 perm   1 sec   (6707 perm/sec)   p_kst 4.105000e-01   p_cons 5.540000e-01   p_joint 5.979000e-01

Outputting figure to mutsig2_images.part000000000058/ERP27.3_850_10000_0.4105_0.554_0.5979.png
                gene_name: ERP27
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 62 percent done.
ERRFI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.262781e-02	ci left: 4.482980e-01	ci right 4.679264e-01	k: 4581	n:10000
Cons ci ratio: 5.305878e-03	ci left: 9.793064e-01	ci right 9.846075e-01	k: 9821	n:10000
KS ci ratio: 5.730108e-02	ci left: 3.095710e-01	ci right 3.279347e-01	k: 3187	n:10000
ERRFI1   10000 perm   1 sec   (6836 perm/sec)   p_kst 3.187000e-01   p_cons 9.821000e-01   p_joint 4.581000e-01

Outputting figure to mutsig2_images.part000000000058/ERRFI1.3_1401_10000_0.3187_0.9821_0.4581.png
                gene_name: ERRFI1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 63 percent done.
ERVFRDE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.003467e-01	ci left: 4.581663e-03	ci right 7.716529e-03	k: 60	n:10000
Cons ci ratio: 1.430962e-01	ci left: 6.478500e-02	ci right 7.486734e-02	k: 697	n:10000
KS ci ratio: 7.154130e-02	ci left: 2.225711e-01	ci right 2.391859e-01	k: 2308	n:10000
ERVFRDE1   10000 perm   2 sec   (6089 perm/sec)   p_kst 2.308000e-01   p_cons 6.970000e-02   p_joint 6.000000e-03

Joint ci ratio: 4.287081e-02	ci left: 2.884364e-01	ci right 3.011233e-01	k: 5895	n:20000
Cons ci ratio: 2.110030e-02	ci left: 6.263765e-01	ci right 6.397847e-01	k: 12662	n:20000
KS ci ratio: 5.081680e-02	ci left: 2.234390e-01	ci right 2.351398e-01	k: 4585	n:20000
ERVFRDE1   20000 perm   4 sec   (5394 perm/sec)   p_kst 2.292500e-01   p_cons 6.331000e-01   p_joint 2.947500e-01

Outputting figure to mutsig2_images.part000000000058/ERVFRDE1.3_1621_20000_0.22925_0.6331_0.29475.png
                gene_name: ERVFRDE1
               theta_stop: 0.051 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 65 percent done.
ESAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.152702e-02	ci left: 7.599031e-01	ci right 7.765404e-01	k: 7683	n:10000
Cons ci ratio: 4.574653e-02	ci left: 4.135897e-01	ci right 4.330550e-01	k: 4233	n:10000
KS ci ratio: 2.498469e-02	ci left: 7.021059e-01	ci right 7.199711e-01	k: 7111	n:10000
ESAM   10000 perm   2 sec   (6457 perm/sec)   p_kst 7.111000e-01   p_cons 4.233000e-01   p_joint 7.683000e-01

Outputting figure to mutsig2_images.part000000000058/ESAM.3_1201_10000_0.7111_0.4233_0.7683.png
                gene_name: ESAM
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 66 percent done.
ESM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.181024e-02	ci left: 5.932311e-01	ci right 6.125089e-01	k: 6029	n:10000
Cons ci ratio: 2.696332e-02	ci left: 6.695471e-01	ci right 6.879487e-01	k: 6788	n:10000
KS ci ratio: 3.888965e-02	ci left: 4.940505e-01	ci right 5.137472e-01	k: 5039	n:10000
ESM1   10000 perm   1 sec   (6858 perm/sec)   p_kst 5.039000e-01   p_cons 6.788000e-01   p_joint 6.029000e-01

Outputting figure to mutsig2_images.part000000000058/ESM1.3_567_10000_0.5039_0.6788_0.6029.png
                gene_name: ESM1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 68 percent done.
ESRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.162861e-02	ci left: 4.600779e-01	ci right 4.797396e-01	k: 4699	n:10000
Cons ci ratio: 4.404582e-02	ci left: 4.321347e-01	ci right 4.516992e-01	k: 4419	n:10000
KS ci ratio: 5.844174e-02	ci left: 3.011400e-01	ci right 3.193706e-01	k: 3102	n:10000
ESRP2   10000 perm   2 sec   (5863 perm/sec)   p_kst 3.102000e-01   p_cons 4.419000e-01   p_joint 4.699000e-01

Outputting figure to mutsig2_images.part000000000058/ESRP2.3_2214_10000_0.3102_0.4419_0.4699.png
                gene_name: ESRP2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 69 percent done.
ESRRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.609381e-01	ci left: 5.147727e-02	ci right 6.058353e-02	k: 559	n:10000
Cons ci ratio: 2.173503e-01	ci left: 2.806894e-02	ci right 3.500749e-02	k: 314	n:10000
KS ci ratio: 7.830018e-02	ci left: 1.924939e-01	ci right 2.082810e-01	k: 2003	n:10000
ESRRA   10000 perm   2 sec   (6123 perm/sec)   p_kst 2.003000e-01   p_cons 3.140000e-02   p_joint 5.590000e-02

Joint ci ratio: 1.861088e-01	ci left: 1.967775e-02	ci right 2.376295e-02	k: 433	n:20000
Cons ci ratio: 1.529431e-01	ci left: 2.936331e-02	ci right 3.427405e-02	k: 635	n:20000
KS ci ratio: 5.516082e-02	ci left: 1.960090e-01	ci right 2.071779e-01	k: 4031	n:20000
ESRRA   20000 perm   4 sec   (5473 perm/sec)   p_kst 2.015500e-01   p_cons 3.175000e-02   p_joint 2.165000e-02

Joint ci ratio: 1.293580e-01	ci left: 2.777574e-02	ci right 3.164938e-02	k: 890	n:30000
Cons ci ratio: 1.270970e-01	ci left: 2.877686e-02	ci right 3.271471e-02	k: 921	n:30000
KS ci ratio: 4.493646e-02	ci left: 1.977666e-01	ci right 2.068911e-01	k: 6069	n:30000
ESRRA   30000 perm   6 sec   (5236 perm/sec)   p_kst 2.023000e-01   p_cons 3.070000e-02   p_joint 2.966667e-02

Joint ci ratio: 1.190253e-01	ci left: 2.482656e-02	ci right 2.799270e-02	k: 1055	n:40000
Cons ci ratio: 1.088128e-01	ci left: 2.971253e-02	ci right 3.315593e-02	k: 1256	n:40000
KS ci ratio: 3.895341e-02	ci left: 1.980747e-01	ci right 2.059686e-01	k: 8080	n:40000
ESRRA   40000 perm   8 sec   (5068 perm/sec)   p_kst 2.020000e-01   p_cons 3.140000e-02   p_joint 2.637500e-02

Joint ci ratio: 8.746584e-02	ci left: 3.692830e-02	ci right 4.032553e-02	k: 1930	n:50000
Cons ci ratio: 9.648066e-02	ci left: 3.041594e-02	ci right 3.351871e-02	k: 1597	n:50000
KS ci ratio: 3.502416e-02	ci left: 1.968193e-01	ci right 2.038555e-01	k: 10016	n:50000
ESRRA   50000 perm   10 sec   (4932 perm/sec)   p_kst 2.003200e-01   p_cons 3.194000e-02   p_joint 3.860000e-02

Outputting figure to mutsig2_images.part000000000058/ESRRA.3_1296_50000_0.20032_0.03194_0.0386.png
                gene_name: ESRRA
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.040 

Current progress: 71 percent done.
ESRRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.613873e-02	ci left: 5.306718e-01	ci right 5.503046e-01	k: 5405	n:10000
Cons ci ratio: 9.379027e-02	ci left: 1.416816e-01	ci right 1.557237e-01	k: 1486	n:10000
KS ci ratio: 5.903404e-02	ci left: 2.968763e-01	ci right 3.150368e-01	k: 3059	n:10000
ESRRB   10000 perm   1 sec   (6729 perm/sec)   p_kst 3.059000e-01   p_cons 1.486000e-01   p_joint 5.405000e-01

Outputting figure to mutsig2_images.part000000000058/ESRRB.3_1559_10000_0.3059_0.1486_0.5405.png
                gene_name: ESRRB
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 72 percent done.
ESYT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.505158e-02	ci left: 7.009962e-01	ci right 7.188814e-01	k: 7100	n:10000
Cons ci ratio: 4.573716e-02	ci left: 4.136894e-01	ci right 4.331553e-01	k: 4234	n:10000
KS ci ratio: 2.044849e-02	ci left: 7.779303e-01	ci right 7.941028e-01	k: 7861	n:10000
ESYT2   10000 perm   2 sec   (5557 perm/sec)   p_kst 7.861000e-01   p_cons 4.234000e-01   p_joint 7.100000e-01

Outputting figure to mutsig2_images.part000000000058/ESYT2.3_2770_10000_0.7861_0.4234_0.71.png
                gene_name: ESYT2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 74 percent done.
ETFA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.705782e-02	ci left: 5.181586e-01	ci right 5.378251e-01	k: 5280	n:10000
Cons ci ratio: 5.788665e-02	ci left: 3.052063e-01	ci right 3.235020e-01	k: 3143	n:10000
KS ci ratio: 1.896790e-02	ci left: 8.024758e-01	ci right 8.179431e-01	k: 8103	n:10000
ETFA   10000 perm   2 sec   (6528 perm/sec)   p_kst 8.103000e-01   p_cons 3.143000e-01   p_joint 5.280000e-01

Outputting figure to mutsig2_images.part000000000058/ETFA.3_1050_10000_0.8103_0.3143_0.528.png
                gene_name: ETFA
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 75 percent done.
ETFDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.194552e-02	ci left: 1.466828e-01	ci right 1.609195e-01	k: 1537	n:10000
Cons ci ratio: 1.865273e-02	ci left: 8.076544e-01	ci right 8.229615e-01	k: 8154	n:10000
KS ci ratio: 1.114414e-01	ci left: 1.039317e-01	ci right 1.162965e-01	k: 1100	n:10000
ETFDH   10000 perm   2 sec   (5990 perm/sec)   p_kst 1.100000e-01   p_cons 8.154000e-01   p_joint 1.537000e-01

Joint ci ratio: 6.824597e-02	ci left: 1.367463e-01	ci right 1.464582e-01	k: 2831	n:20000
Cons ci ratio: 1.287929e-02	ci left: 8.170822e-01	ci right 8.277238e-01	k: 16449	n:20000
KS ci ratio: 7.892335e-02	ci left: 1.054499e-01	ci right 1.141639e-01	k: 2195	n:20000
ETFDH   20000 perm   4 sec   (5306 perm/sec)   p_kst 1.097500e-01   p_cons 8.224500e-01   p_joint 1.415500e-01

Outputting figure to mutsig2_images.part000000000058/ETFDH.3_1906_20000_0.10975_0.82245_0.14155.png
                gene_name: ETFDH
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 77 percent done.
ETS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.349480e-02	ci left: 7.269395e-01	ci right 7.443230e-01	k: 7357	n:10000
KS ci ratio: 2.345856e-02	ci left: 7.275456e-01	ci right 7.449166e-01	k: 7363	n:10000
ETS2   10000 perm   2 sec   (6004 perm/sec)   p_kst 7.363000e-01   p_cons 7.357000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ETS2.3_1446_10000_0.7363_0.7357_1.png
                gene_name: ETS2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
ETV4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.728790e-02	ci left: 3.096702e-01	ci right 3.280354e-01	k: 3188	n:10000
Cons ci ratio: 1.821160e-02	ci left: 8.148676e-01	ci right 8.299441e-01	k: 8225	n:10000
KS ci ratio: 9.518550e-02	ci left: 1.380551e-01	ci right 1.519524e-01	k: 1449	n:10000
ETV4   10000 perm   2 sec   (6236 perm/sec)   p_kst 1.449000e-01   p_cons 8.225000e-01   p_joint 3.188000e-01

Outputting figure to mutsig2_images.part000000000058/ETV4.3_1503_10000_0.1449_0.8225_0.3188.png
                gene_name: ETV4
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 80 percent done.
EVL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.613146e-02	ci left: 5.307719e-01	ci right 5.504044e-01	k: 5406	n:10000
Cons ci ratio: 6.709020e-02	ci left: 2.458864e-01	ci right 2.630569e-01	k: 2544	n:10000
KS ci ratio: 2.461427e-02	ci left: 7.082607e-01	ci right 7.260126e-01	k: 7172	n:10000
EVL   10000 perm   2 sec   (6099 perm/sec)   p_kst 7.172000e-01   p_cons 2.544000e-01   p_joint 5.406000e-01

Outputting figure to mutsig2_images.part000000000058/EVL.3_1313_10000_0.7172_0.2544_0.5406.png
                gene_name: EVL
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 82 percent done.
ERCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.880045e-02	ci left: 6.399554e-01	ci right 6.587575e-01	k: 6494	n:10000
Cons ci ratio: 1.893089e-02	ci left: 8.030849e-01	ci right 8.185336e-01	k: 8109	n:10000
KS ci ratio: 5.345604e-02	ci left: 3.402490e-01	ci right 3.590387e-01	k: 3496	n:10000
ERCC1   10000 perm   1 sec   (6888 perm/sec)   p_kst 3.496000e-01   p_cons 8.109000e-01   p_joint 6.494000e-01

Outputting figure to mutsig2_images.part000000000058/ERCC1.2_1059_10000_0.3496_0.8109_0.6494.png
                gene_name: ERCC1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 83 percent done.
ERGIC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.572947e-02	ci left: 3.216780e-01	ci right 3.402206e-01	k: 3309	n:10000
Cons ci ratio: 6.020807e-02	ci left: 2.886490e-01	ci right 3.066690e-01	k: 2976	n:10000
KS ci ratio: 1.109326e-01	ci left: 1.048095e-01	ci right 1.172181e-01	k: 1109	n:10000
ERGIC3   10000 perm   2 sec   (6652 perm/sec)   p_kst 1.109000e-01   p_cons 2.976000e-01   p_joint 3.309000e-01

Joint ci ratio: 2.518239e-02	ci left: 5.408707e-01	ci right 5.547154e-01	k: 10956	n:20000
Cons ci ratio: 4.250253e-02	ci left: 2.920137e-01	ci right 3.047450e-01	k: 5967	n:20000
KS ci ratio: 7.850234e-02	ci left: 1.064817e-01	ci right 1.152318e-01	k: 2216	n:20000
ERGIC3   20000 perm   3 sec   (5847 perm/sec)   p_kst 1.108000e-01   p_cons 2.983500e-01   p_joint 5.478000e-01

Outputting figure to mutsig2_images.part000000000058/ERGIC3.2_1223_20000_0.1108_0.29835_0.5478.png
                gene_name: ERGIC3
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 85 percent done.
ERICH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.778304e-02	ci left: 6.562561e-01	ci right 6.748474e-01	k: 6656	n:10000
Cons ci ratio: 4.584033e-02	ci left: 4.125930e-01	ci right 4.320522e-01	k: 4223	n:10000
KS ci ratio: 4.288625e-02	ci left: 4.453040e-01	ci right 4.649221e-01	k: 4551	n:10000
ERICH1   10000 perm   1 sec   (6918 perm/sec)   p_kst 4.551000e-01   p_cons 4.223000e-01   p_joint 6.656000e-01

Outputting figure to mutsig2_images.part000000000058/ERICH1.2_1356_10000_0.4551_0.4223_0.6656.png
                gene_name: ERICH1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 86 percent done.
ERO1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.526781e-01	ci left: 2.052656e-02	ci right 2.655540e-02	k: 234	n:10000
Cons ci ratio: 6.244088e-02	ci left: 2.737893e-01	ci right 2.915374e-01	k: 2826	n:10000
KS ci ratio: 2.709509e-01	ci left: 1.771967e-02	ci right 2.336449e-02	k: 204	n:10000
ERO1L   10000 perm   1 sec   (6786 perm/sec)   p_kst 2.040000e-02   p_cons 2.826000e-01   p_joint 2.340000e-02

Joint ci ratio: 1.090837e-01	ci left: 5.733236e-02	ci right 6.399608e-02	k: 1212	n:20000
Cons ci ratio: 4.656276e-02	ci left: 2.555189e-01	ci right 2.677505e-01	k: 5232	n:20000
KS ci ratio: 1.906485e-01	ci left: 1.872403e-02	ci right 2.271702e-02	k: 413	n:20000
ERO1L   20000 perm   3 sec   (5923 perm/sec)   p_kst 2.065000e-02   p_cons 2.616000e-01   p_joint 6.060000e-02

Joint ci ratio: 8.137254e-02	ci left: 6.887093e-02	ci right 7.474565e-02	k: 2153	n:30000
Cons ci ratio: 3.793497e-02	ci left: 2.574945e-01	ci right 2.674849e-01	k: 7874	n:30000
KS ci ratio: 1.555373e-01	ci left: 1.911875e-02	ci right 2.237499e-02	k: 621	n:30000
ERO1L   30000 perm   5 sec   (5576 perm/sec)   p_kst 2.070000e-02   p_cons 2.624667e-01   p_joint 7.176667e-02

Joint ci ratio: 9.210094e-02	ci left: 4.132614e-02	ci right 4.534049e-02	k: 1732	n:40000
Cons ci ratio: 3.264398e-02	ci left: 2.606300e-01	ci right 2.693042e-01	k: 10598	n:40000
KS ci ratio: 1.326191e-01	ci left: 1.995578e-02	ci right 2.281429e-02	k: 854	n:40000
ERO1L   40000 perm   7 sec   (5387 perm/sec)   p_kst 2.135000e-02   p_cons 2.649500e-01   p_joint 4.330000e-02

Joint ci ratio: 6.253533e-02	ci left: 7.057699e-02	ci right 7.515275e-02	k: 3642	n:50000
Cons ci ratio: 2.931923e-02	ci left: 2.594832e-01	ci right 2.672243e-01	k: 13167	n:50000
KS ci ratio: 1.190030e-01	ci left: 1.997464e-02	ci right 2.252137e-02	k: 1061	n:50000
ERO1L   50000 perm   10 sec   (5222 perm/sec)   p_kst 2.122000e-02   p_cons 2.633400e-01   p_joint 7.284000e-02

Joint ci ratio: 5.726783e-02	ci left: 7.035524e-02	ci right 7.451956e-02	k: 4345	n:60000
Cons ci ratio: 2.673552e-02	ci left: 2.602438e-01	ci right 2.673124e-01	k: 15826	n:60000
KS ci ratio: 1.095782e-01	ci left: 1.973783e-02	ci right 2.204217e-02	k: 1252	n:60000
ERO1L   60000 perm   12 sec   (5092 perm/sec)   p_kst 2.086667e-02   p_cons 2.637667e-01   p_joint 7.241667e-02

Joint ci ratio: 6.011960e-02	ci left: 5.553318e-02	ci right 5.898935e-02	k: 4007	n:70000
Cons ci ratio: 2.471214e-02	ci left: 2.611357e-01	ci right 2.676839e-01	k: 18508	n:70000
KS ci ratio: 1.012320e-01	ci left: 1.990877e-02	ci right 2.204548e-02	k: 1467	n:70000
ERO1L   70000 perm   14 sec   (4991 perm/sec)   p_kst 2.095714e-02   p_cons 2.644000e-01   p_joint 5.724286e-02

Joint ci ratio: 5.574514e-02	ci left: 5.658745e-02	ci right 5.984468e-02	k: 4656	n:80000
Cons ci ratio: 2.318100e-02	ci left: 2.602629e-01	ci right 2.663793e-01	k: 21065	n:80000
KS ci ratio: 9.494610e-02	ci left: 1.987105e-02	ci right 2.186391e-02	k: 1668	n:80000
ERO1L   80000 perm   16 sec   (4902 perm/sec)   p_kst 2.085000e-02   p_cons 2.633125e-01   p_joint 5.820000e-02

Outputting figure to mutsig2_images.part000000000058/ERO1L.2_1471_80000_0.02085_0.26331_0.0582.png
                gene_name: ERO1L
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.060 

Current progress: 88 percent done.
ERP44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.414085e-02	ci left: 8.784825e-01	ci right 8.910923e-01	k: 8849	n:10000
KS ci ratio: 4.340871e-02	ci left: 4.393171e-01	ci right 4.589126e-01	k: 4491	n:10000
ERP44   10000 perm   2 sec   (6647 perm/sec)   p_kst 4.491000e-01   p_cons 8.849000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000058/ERP44.2_1269_10000_0.4491_0.8849_1.png
                gene_name: ERP44
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
ESR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.020373e-01	ci left: 1.219999e-01	ci right 1.352172e-01	k: 1285	n:10000
Cons ci ratio: 3.381460e-02	ci left: 5.635359e-01	ci right 5.830214e-01	k: 5733	n:10000
KS ci ratio: 1.058997e-01	ci left: 1.140829e-01	ci right 1.269391e-01	k: 1204	n:10000
ESR2   10000 perm   2 sec   (6305 perm/sec)   p_kst 1.204000e-01   p_cons 5.733000e-01   p_joint 1.285000e-01

Joint ci ratio: 6.927520e-02	ci left: 1.331986e-01	ci right 1.428069e-01	k: 2759	n:20000
Cons ci ratio: 2.415475e-02	ci left: 5.614510e-01	ci right 5.752291e-01	k: 11367	n:20000
KS ci ratio: 7.363845e-02	ci left: 1.195114e-01	ci right 1.286982e-01	k: 2481	n:20000
ESR2   20000 perm   4 sec   (5541 perm/sec)   p_kst 1.240500e-01   p_cons 5.683500e-01   p_joint 1.379500e-01

Outputting figure to mutsig2_images.part000000000058/ESR2.2_1711_20000_0.12405_0.56835_0.13795.png
                gene_name: ESR2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 91 percent done.
ESRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.487514e-02	ci left: 1.682863e-01	ci right 1.833030e-01	k: 1757	n:10000
Cons ci ratio: 7.501285e-02	ci left: 2.063903e-01	ci right 2.225764e-01	k: 2144	n:10000
KS ci ratio: 8.652199e-02	ci left: 1.628811e-01	ci right 1.777115e-01	k: 1702	n:10000
ESRP1   10000 perm   2 sec   (5905 perm/sec)   p_kst 1.702000e-01   p_cons 2.144000e-01   p_joint 1.757000e-01

Outputting figure to mutsig2_images.part000000000058/ESRP1.2_2131_10000_0.1702_0.2144_0.1757.png
                gene_name: ESRP1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 92 percent done.
ETNK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.101274e-02	ci left: 7.685089e-01	ci right 7.849296e-01	k: 7768	n:10000
Cons ci ratio: 4.623708e-02	ci left: 4.084076e-01	ci right 4.278402e-01	k: 4181	n:10000
KS ci ratio: 4.014615e-02	ci left: 4.781577e-01	ci right 4.978493e-01	k: 4880	n:10000
ETNK1   10000 perm   2 sec   (6063 perm/sec)   p_kst 4.880000e-01   p_cons 4.181000e-01   p_joint 7.768000e-01

Outputting figure to mutsig2_images.part000000000058/ETNK1.2_1489_10000_0.488_0.4181_0.7768.png
                gene_name: ETNK1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 94 percent done.
ETNK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.791418e-02	ci left: 6.541423e-01	ci right 6.727624e-01	k: 6635	n:10000
Cons ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
KS ci ratio: 4.346137e-02	ci left: 4.387185e-01	ci right 4.583115e-01	k: 4485	n:10000
ETNK2   10000 perm   2 sec   (6347 perm/sec)   p_kst 4.485000e-01   p_cons 5.242000e-01   p_joint 6.635000e-01

Outputting figure to mutsig2_images.part000000000058/ETNK2.2_1193_10000_0.4485_0.5242_0.6635.png
                gene_name: ETNK2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 95 percent done.
ETV3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.395232e-03	ci left: 9.786643e-01	ci right 9.840501e-01	k: 9815	n:10000
Cons ci ratio: 2.219733e-02	ci left: 7.486720e-01	ci right 7.655780e-01	k: 7572	n:10000
KS ci ratio: 1.948433e-02	ci left: 7.939508e-01	ci right 8.096730e-01	k: 8019	n:10000
ETV3L   10000 perm   2 sec   (6421 perm/sec)   p_kst 8.019000e-01   p_cons 7.572000e-01   p_joint 9.815000e-01

Outputting figure to mutsig2_images.part000000000058/ETV3L.2_1106_10000_0.8019_0.7572_0.9815.png
                gene_name: ETV3L
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 97 percent done.
EVI2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.890521e-02	ci left: 4.938506e-01	ci right 5.135473e-01	k: 5037	n:10000
Cons ci ratio: 2.972347e-02	ci left: 6.253754e-01	ci right 6.443460e-01	k: 6349	n:10000
KS ci ratio: 5.945362e-02	ci left: 2.939022e-01	ci right 3.120127e-01	k: 3029	n:10000
EVI2A   10000 perm   1 sec   (6750 perm/sec)   p_kst 3.029000e-01   p_cons 6.349000e-01   p_joint 5.037000e-01

Outputting figure to mutsig2_images.part000000000058/EVI2A.2_788_10000_0.3029_0.6349_0.5037.png
                gene_name: EVI2A
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 98 percent done.
EVI2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.497695e-03	ci left: 9.846908e-01	ci right 9.892189e-01	k: 9871	n:10000
Cons ci ratio: 1.349449e-02	ci left: 8.879038e-01	ci right 9.000656e-01	k: 8941	n:10000
KS ci ratio: 2.388759e-02	ci left: 7.203745e-01	ci right 7.378918e-01	k: 7292	n:10000
EVI2B   10000 perm   2 sec   (6185 perm/sec)   p_kst 7.292000e-01   p_cons 8.941000e-01   p_joint 9.871000e-01

Outputting figure to mutsig2_images.part000000000058/EVI2B.2_1351_10000_0.7292_0.8941_0.9871.png
                gene_name: EVI2B
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000058
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 58 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1532>
Subject: Job 9893931: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1532>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000059> was used as the working directory.
Started at Sat Oct  6 00:07:00 2012
Results reported at Sat Oct  6 00:16:52 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000059.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000059.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 59  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000059.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    611.69 sec.
    Max Memory :      3533 MB
    Max Swap   :      5932 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
59
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 59
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 59: processing genes 5230 - 5319
Calculating significance of each gene.
Using projection method.
5230	EVX2	8.422400e-01
5231	EWSR1	1
5232	EXD1	8.038545e-02
5233	EXD2	8.816135e-01
5234	EXD3	8.788981e-01
5235	EXO1	8.531350e-01
5236	EXOC1	8.937197e-01
5237	EXOC2	3.859030e-01
5238	EXOC3	1
5239	EXOC3L	4.117950e-01
5240	EXOC3L2	1.847554e-01
5241	EXOC4	2.210284e-01
5242	EXOC5	7.546199e-01
5243	EXOC6	4.688581e-02
5244	EXOC6B	5.578000e-01
5245	EXOC7	8.205914e-01
5246	EXOC8	8.584871e-01
5247	EXOG	3.687965e-01
5248	EXOSC1	1
5249	EXOSC10	3.309118e-01
5250	EXOSC2	3.268417e-01
5251	EXOSC3	1
5252	EXOSC4	1
5253	EXOSC5	2.818967e-01
5254	EXOSC7	1
5255	EXOSC8	1
5256	EXOSC9	2.969641e-02
5257	EXPH5	5.025497e-01
5258	EXT1	6.045749e-03
5259	EXT2	1
5260	EXTL1	7.585866e-01
5261	EXTL2	1.251899e-02
5262	EXTL3	2.629002e-01
5263	EYA1	6.854349e-02
5264	EYA2	4.384965e-01
5265	EYA3	1
5266	EYA4	6.882721e-02
5267	EZH1	2.357428e-01
5268	EZH2	5.996419e-01
5269	EZR	8.596983e-01
5270	F10	9.554011e-01
5271	F11	2.254993e-01
5272	F11R	6.324515e-01
5273	F12	8.567564e-01
5274	F13A1	9.464141e-04
5275	F13B	2.148874e-01
5276	F2	6.701727e-01
5277	F2R	1
5278	F2RL1	7.796388e-01
5279	F2RL2	2.210971e-01
5280	F2RL3	1
5281	F3	2.473714e-01
5282	F5	1.291618e-01
5283	F7	3.939582e-01
5284	F8	6.372312e-01
5285	F9	2.441685e-02
5286	FA2H	1.097524e-01
5287	FAAH	7.015394e-01
In gene FAAH2 the following bins exceed PROBCAP:
    COAD-AA-A017	categ 6	N = 1643    n = 1	mu =   2.63e-07
5288	FAAH2	4.866932e-02
5289	FABP1	3.509098e-01
5290	FABP12	1
5291	FABP2	1.374206e-01
5292	FABP3	3.098480e-01
5293	FABP4	2.882120e-01
5294	FABP5	2.249281e-01
5295	FABP6	5.281014e-01
5296	FABP7	2.550686e-01
5297	FABP9	1
5298	FADD	1
5299	FADS1	1
5300	FADS2	6.344417e-02
5301	FADS3	5.128223e-01
5302	FADS6	7.799701e-01
5303	FAF1	2.483494e-01
5304	FAF2	3.697791e-01
5305	FAH	5.550483e-01
5306	FAHD1	1
5307	FAHD2A	1
5308	FAHD2B	1
5309	FAIM	5.028736e-01
5310	FAIM2	2.120891e-01
5311	FAIM3	6.876494e-01
5312	FAM100A	1
5313	FAM100B	1
5314	FAM101A	1
5315	FAM101B	4.073613e-01
5316	FAM102A	2.566215e-01
5317	FAM102B	1
5318	FAM103A1	1
5319	FAM104A	3.887634e-01
Done

Running MutSig 2:
Scatter job 59: processing genes 5230 - 5319
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
F5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.249928e-02	ci left: 4.497952e-01	ci right 4.694284e-01	k: 4596	n:10000
Cons ci ratio: 1.038047e-01	ci left: 1.182847e-01	ci right 1.313348e-01	k: 1247	n:10000
KS ci ratio: 3.142636e-02	ci left: 5.990540e-01	ci right 6.182826e-01	k: 6087	n:10000
F5   10000 perm   4 sec   (2564 perm/sec)   p_kst 6.087000e-01   p_cons 1.247000e-01   p_joint 4.596000e-01

Joint ci ratio: 4.054605e-02	ci left: 3.119952e-01	ci right 3.249576e-01	k: 6369	n:20000
Cons ci ratio: 7.325148e-02	ci left: 1.206431e-01	ci right 1.298661e-01	k: 2504	n:20000
KS ci ratio: 2.301949e-02	ci left: 5.849503e-01	ci right 5.986230e-01	k: 11836	n:20000
F5   20000 perm   14 sec   (1479 perm/sec)   p_kst 5.918000e-01   p_cons 1.252000e-01   p_joint 3.184500e-01

Outputting figure to mutsig2_images.part000000000059/F5.21_6775_20000_0.5918_0.1252_0.31845.png
                gene_name: F5
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 2 percent done.
F8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.926357e-02	ci left: 6.326140e-01	ci right 6.515032e-01	k: 6421	n:10000
Cons ci ratio: 7.799618e-03	ci left: 9.580656e-01	ci right 9.656623e-01	k: 9620	n:10000
KS ci ratio: 4.311172e-02	ci left: 4.427095e-01	ci right 4.623181e-01	k: 4525	n:10000
F8   10000 perm   3 sec   (3199 perm/sec)   p_kst 4.525000e-01   p_cons 9.620000e-01   p_joint 6.421000e-01

Outputting figure to mutsig2_images.part000000000059/F8.18_7188_10000_0.4525_0.962_0.6421.png
                gene_name: F8
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 4 percent done.
EXPH5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.312859e-02	ci left: 3.430310e-01	ci right 3.618550e-01	k: 3524	n:10000
Cons ci ratio: 8.151886e-02	ci left: 1.800887e-01	ci right 1.954937e-01	k: 1877	n:10000
KS ci ratio: 3.448967e-02	ci left: 5.538124e-01	ci right 5.733505e-01	k: 5636	n:10000
EXPH5   10000 perm   3 sec   (2964 perm/sec)   p_kst 5.636000e-01   p_cons 1.877000e-01   p_joint 3.524000e-01

Outputting figure to mutsig2_images.part000000000059/EXPH5.11_5994_10000_0.5636_0.1877_0.3524.png
                gene_name: EXPH5
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 6 percent done.
EXT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.072868e-02	ci left: 1.501165e-01	ci right 1.644837e-01	k: 1572	n:10000
Cons ci ratio: 2.052170e-01	ci left: 3.157898e-02	ci right 3.889501e-02	k: 351	n:10000
KS ci ratio: 1.803680e-02	ci left: 8.177134e-01	ci right 8.326966e-01	k: 8253	n:10000
EXT1   10000 perm   2 sec   (4186 perm/sec)   p_kst 8.253000e-01   p_cons 3.510000e-02   p_joint 1.572000e-01

Joint ci ratio: 5.881266e-02	ci left: 1.763775e-01	ci right 1.871151e-01	k: 3634	n:20000
Cons ci ratio: 1.388934e-01	ci left: 3.563416e-02	ci right 4.100114e-02	k: 765	n:20000
KS ci ratio: 1.309043e-02	ci left: 8.122275e-01	ci right 8.229800e-01	k: 16353	n:20000
EXT1   20000 perm   6 sec   (3519 perm/sec)   p_kst 8.176500e-01   p_cons 3.825000e-02   p_joint 1.817000e-01

Joint ci ratio: 4.671391e-02	ci left: 1.856404e-01	ci right 1.945531e-01	k: 5702	n:30000
Cons ci ratio: 1.124436e-01	ci left: 3.674009e-02	ci right 4.114977e-02	k: 1167	n:30000
KS ci ratio: 1.063977e-02	ci left: 8.145957e-01	ci right 8.233424e-01	k: 24570	n:30000
EXT1   30000 perm   9 sec   (3458 perm/sec)   p_kst 8.190000e-01   p_cons 3.890000e-02   p_joint 1.900667e-01

Joint ci ratio: 4.188667e-02	ci left: 1.758492e-01	ci right 1.833974e-01	k: 7184	n:40000
Cons ci ratio: 9.936577e-02	ci left: 3.558613e-02	ci right 3.933140e-02	k: 1497	n:40000
KS ci ratio: 9.380114e-03	ci left: 8.097988e-01	ci right 8.174556e-01	k: 32546	n:40000
EXT1   40000 perm   12 sec   (3367 perm/sec)   p_kst 8.136500e-01   p_cons 3.742500e-02   p_joint 1.796000e-01

Outputting figure to mutsig2_images.part000000000059/EXT1.11_2285_40000_0.81365_0.037425_0.1796.png
                gene_name: EXT1
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.18 

Current progress: 8 percent done.
F13A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.072191e-01	ci left: 1.115436e-01	ci right 1.242799e-01	k: 1178	n:10000
Cons ci ratio: 6.723193e-02	ci left: 2.450955e-01	ci right 2.622482e-01	k: 2536	n:10000
KS ci ratio: 1.579714e-01	ci left: 5.340171e-02	ci right 6.265786e-02	k: 579	n:10000
F13A1   10000 perm   2 sec   (4242 perm/sec)   p_kst 5.790000e-02   p_cons 2.536000e-01   p_joint 1.178000e-01

Joint ci ratio: 8.741912e-02	ci left: 8.734272e-02	ci right 9.537654e-02	k: 1826	n:20000
Cons ci ratio: 4.800960e-02	ci left: 2.439609e-01	ci right 2.560118e-01	k: 4999	n:20000
KS ci ratio: 1.157874e-01	ci left: 5.105351e-02	ci right 5.737688e-02	k: 1083	n:20000
F13A1   20000 perm   5 sec   (3790 perm/sec)   p_kst 5.415000e-02   p_cons 2.499500e-01   p_joint 9.130000e-02

Joint ci ratio: 7.811858e-02	ci left: 7.440048e-02	ci right 8.048165e-02	k: 2322	n:30000
Cons ci ratio: 3.845121e-02	ci left: 2.523272e-01	ci right 2.622532e-01	k: 7718	n:30000
KS ci ratio: 9.472568e-02	ci left: 5.143645e-02	ci right 5.658368e-02	k: 1619	n:30000
F13A1   30000 perm   8 sec   (3728 perm/sec)   p_kst 5.396667e-02   p_cons 2.572667e-01   p_joint 7.740000e-02

Outputting figure to mutsig2_images.part000000000059/F13A1.10_2255_30000_0.053967_0.25727_0.0774.png
                gene_name: F13A1
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.080 

Current progress: 10 percent done.
EXTL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.699424e-02	ci left: 6.690435e-01	ci right 6.874525e-01	k: 6783	n:10000
Cons ci ratio: 5.407281e-02	ci left: 3.350832e-01	ci right 3.538075e-01	k: 3444	n:10000
KS ci ratio: 1.356558e-02	ci left: 8.868791e-01	ci right 8.990909e-01	k: 8931	n:10000
EXTL3   10000 perm   2 sec   (5057 perm/sec)   p_kst 8.931000e-01   p_cons 3.444000e-01   p_joint 6.783000e-01

Outputting figure to mutsig2_images.part000000000059/EXTL3.9_2780_10000_0.8931_0.3444_0.6783.png
                gene_name: EXTL3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 12 percent done.
EYA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.865703e-02	ci left: 4.970503e-01	ci right 5.167457e-01	k: 5069	n:10000
Cons ci ratio: 1.401569e-02	ci left: 8.803248e-01	ci right 8.928490e-01	k: 8867	n:10000
KS ci ratio: 5.444600e-02	ci left: 3.320042e-01	ci right 3.506883e-01	k: 3413	n:10000
EYA4   10000 perm   2 sec   (4431 perm/sec)   p_kst 3.413000e-01   p_cons 8.867000e-01   p_joint 5.069000e-01

Outputting figure to mutsig2_images.part000000000059/EYA4.9_2101_10000_0.3413_0.8867_0.5069.png
                gene_name: EYA4
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 14 percent done.
EXOC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.371229e-02	ci left: 7.233032e-01	ci right 7.407614e-01	k: 7321	n:10000
Cons ci ratio: 6.933755e-02	ci left: 2.337305e-01	ci right 2.506200e-01	k: 2421	n:10000
KS ci ratio: 1.208232e-02	ci left: 9.076136e-01	ci right 9.187443e-01	k: 9133	n:10000
EXOC2   10000 perm   2 sec   (4851 perm/sec)   p_kst 9.133000e-01   p_cons 2.421000e-01   p_joint 7.321000e-01

Outputting figure to mutsig2_images.part000000000059/EXOC2.7_2883_10000_0.9133_0.2421_0.7321.png
                gene_name: EXOC2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 16 percent done.
EXOC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.863342e-02	ci left: 2.997517e-01	ci right 3.179597e-01	k: 3088	n:10000
Cons ci ratio: 8.522827e-02	ci left: 1.671068e-01	ci right 1.820833e-01	k: 1745	n:10000
KS ci ratio: 5.131657e-02	ci left: 3.589352e-01	ci right 3.779415e-01	k: 3684	n:10000
EXOC4   10000 perm   3 sec   (3879 perm/sec)   p_kst 3.684000e-01   p_cons 1.745000e-01   p_joint 3.088000e-01

Outputting figure to mutsig2_images.part000000000059/EXOC4.7_3006_10000_0.3684_0.1745_0.3088.png
                gene_name: EXOC4
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 18 percent done.
EXOC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.553915e-02	ci left: 5.389839e-01	ci right 5.585876e-01	k: 5488	n:10000
Cons ci ratio: 4.369932e-02	ci left: 4.360249e-01	ci right 4.556067e-01	k: 4458	n:10000
KS ci ratio: 5.005077e-02	ci left: 3.705722e-01	ci right 3.896977e-01	k: 3801	n:10000
EXOC6   10000 perm   2 sec   (4316 perm/sec)   p_kst 3.801000e-01   p_cons 4.458000e-01   p_joint 5.488000e-01

Outputting figure to mutsig2_images.part000000000059/EXOC6.7_2593_10000_0.3801_0.4458_0.5488.png
                gene_name: EXOC6
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 20 percent done.
EXTL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.219901e-02	ci left: 3.510811e-01	ci right 3.700002e-01	k: 3605	n:10000
Cons ci ratio: 3.636482e-02	ci left: 5.275679e-01	ci right 5.472103e-01	k: 5374	n:10000
KS ci ratio: 7.188542e-02	ci left: 2.208930e-01	ci right 2.374651e-01	k: 2291	n:10000
EXTL2   10000 perm   2 sec   (6249 perm/sec)   p_kst 2.291000e-01   p_cons 5.374000e-01   p_joint 3.605000e-01

Outputting figure to mutsig2_images.part000000000059/EXTL2.6_1009_10000_0.2291_0.5374_0.3605.png
                gene_name: EXTL2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 22 percent done.
F9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.570440e-02	ci left: 1.655342e-01	ci right 1.804568e-01	k: 1729	n:10000
Cons ci ratio: 1.013153e-01	ci left: 1.235648e-01	ci right 1.368514e-01	k: 1301	n:10000
KS ci ratio: 7.961909e-02	ci left: 1.872743e-01	ci right 2.029038e-01	k: 1950	n:10000
F9   10000 perm   2 sec   (4474 perm/sec)   p_kst 1.950000e-01   p_cons 1.301000e-01   p_joint 1.729000e-01

Joint ci ratio: 6.226385e-02	ci left: 1.602253e-01	ci right 1.705721e-01	k: 3307	n:20000
Cons ci ratio: 6.993803e-02	ci left: 1.309819e-01	ci right 1.405243e-01	k: 2714	n:20000
KS ci ratio: 5.599701e-02	ci left: 1.912598e-01	ci right 2.023285e-01	k: 3935	n:20000
F9   20000 perm   5 sec   (3710 perm/sec)   p_kst 1.967500e-01   p_cons 1.357000e-01   p_joint 1.653500e-01

Outputting figure to mutsig2_images.part000000000059/F9.6_1418_20000_0.19675_0.1357_0.16535.png
                gene_name: F9
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 24 percent done.
EXD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.231157e-02	ci left: 4.519911e-01	ci right 4.716311e-01	k: 4618	n:10000
Cons ci ratio: 1.225679e-02	ci left: 9.052487e-01	ci right 9.165106e-01	k: 9110	n:10000
KS ci ratio: 5.751282e-02	ci left: 3.079837e-01	ci right 3.263229e-01	k: 3171	n:10000
EXD1   10000 perm   2 sec   (5102 perm/sec)   p_kst 3.171000e-01   p_cons 9.110000e-01   p_joint 4.618000e-01

Outputting figure to mutsig2_images.part000000000059/EXD1.5_1585_10000_0.3171_0.911_0.4618.png
                gene_name: EXD1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 25 percent done.
EXOSC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.923248e-02	ci left: 3.783335e-01	ci right 3.975319e-01	k: 3879	n:10000
Cons ci ratio: 8.194893e-02	ci left: 1.785143e-01	ci right 1.938689e-01	k: 1861	n:10000
KS ci ratio: 2.884472e-02	ci left: 6.392513e-01	ci right 6.580620e-01	k: 6487	n:10000
EXOSC9   10000 perm   2 sec   (5441 perm/sec)   p_kst 6.487000e-01   p_cons 1.861000e-01   p_joint 3.879000e-01

Outputting figure to mutsig2_images.part000000000059/EXOSC9.5_1423_10000_0.6487_0.1861_0.3879.png
                gene_name: EXOSC9
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 27 percent done.
EYA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.612434e-01	ci left: 5.128492e-02	ci right 6.037601e-02	k: 557	n:10000
Cons ci ratio: 1.637241e-02	ci left: 8.443782e-01	ci right 8.584164e-01	k: 8515	n:10000
KS ci ratio: 2.483822e-01	ci left: 2.127733e-02	ci right 2.740406e-02	k: 242	n:10000
EYA1   10000 perm   2 sec   (4390 perm/sec)   p_kst 2.420000e-02   p_cons 8.515000e-01   p_joint 5.570000e-02

Joint ci ratio: 8.498378e-02	ci left: 9.204927e-02	ci right 1.002686e-01	k: 1922	n:20000
Cons ci ratio: 1.166083e-02	ci left: 8.446208e-01	ci right 8.545773e-01	k: 16993	n:20000
KS ci ratio: 1.708341e-01	ci left: 2.345530e-02	ci right 2.788407e-02	k: 512	n:20000
EYA1   20000 perm   5 sec   (3875 perm/sec)   p_kst 2.560000e-02   p_cons 8.496500e-01   p_joint 9.610000e-02

Joint ci ratio: 9.525516e-02	ci left: 5.088254e-02	ci right 5.600438e-02	k: 1602	n:30000
Cons ci ratio: 9.507791e-03	ci left: 8.459089e-01	ci right 8.540232e-01	k: 25500	n:30000
KS ci ratio: 1.385197e-01	ci left: 2.419639e-02	ci right 2.782952e-02	k: 779	n:30000
EYA1   30000 perm   8 sec   (3801 perm/sec)   p_kst 2.596667e-02   p_cons 8.500000e-01   p_joint 5.340000e-02

Joint ci ratio: 6.974113e-02	ci left: 7.064145e-02	ci right 7.577072e-02	k: 2927	n:40000
Cons ci ratio: 8.254071e-03	ci left: 8.458319e-01	ci right 8.528673e-01	k: 33975	n:40000
KS ci ratio: 1.191993e-01	ci left: 2.475374e-02	ci right 2.791554e-02	k: 1052	n:40000
EYA1   40000 perm   11 sec   (3511 perm/sec)   p_kst 2.630000e-02   p_cons 8.493750e-01   p_joint 7.317500e-02

Joint ci ratio: 6.858908e-02	ci left: 5.921291e-02	ci right 6.343819e-02	k: 3065	n:50000
Cons ci ratio: 7.382476e-03	ci left: 8.462146e-01	ci right 8.525048e-01	k: 42469	n:50000
KS ci ratio: 1.069182e-01	ci left: 2.477854e-02	ci right 2.759684e-02	k: 1308	n:50000
EYA1   50000 perm   15 sec   (3429 perm/sec)   p_kst 2.616000e-02   p_cons 8.493800e-01   p_joint 6.130000e-02

Joint ci ratio: 6.453329e-02	ci left: 5.606071e-02	ci right 5.981553e-02	k: 3475	n:60000
Cons ci ratio: 6.754488e-03	ci left: 8.459083e-01	ci right 8.516579e-01	k: 50928	n:60000
KS ci ratio: 9.794896e-02	ci left: 2.472504e-02	ci right 2.728775e-02	k: 1559	n:60000
EYA1   60000 perm   18 sec   (3398 perm/sec)   p_kst 2.598333e-02   p_cons 8.488000e-01   p_joint 5.791667e-02

Outputting figure to mutsig2_images.part000000000059/EYA1.5_1872_60000_0.025983_0.8488_0.057917.png
                gene_name: EYA1
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.060 

Current progress: 29 percent done.
EZH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.270076e-02	ci left: 3.467078e-01	ci right 3.655760e-01	k: 3561	n:10000
Cons ci ratio: 3.857208e-02	ci left: 4.981503e-01	ci right 5.178450e-01	k: 5080	n:10000
KS ci ratio: 7.432953e-02	ci left: 2.094474e-01	ci right 2.257174e-01	k: 2175	n:10000
EZH1   10000 perm   2 sec   (4441 perm/sec)   p_kst 2.175000e-01   p_cons 5.080000e-01   p_joint 3.561000e-01

Outputting figure to mutsig2_images.part000000000059/EZH1.5_2320_10000_0.2175_0.508_0.3561.png
                gene_name: EZH1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 31 percent done.
F13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.047793e-02	ci left: 6.136175e-01	ci right 6.327106e-01	k: 6232	n:10000
Cons ci ratio: 1.358404e-03	ci left: 9.980327e-01	ci right 9.994508e-01	k: 9989	n:10000
KS ci ratio: 4.575590e-02	ci left: 4.134900e-01	ci right 4.329547e-01	k: 4232	n:10000
F13B   10000 perm   2 sec   (4637 perm/sec)   p_kst 4.232000e-01   p_cons 9.989000e-01   p_joint 6.232000e-01

Outputting figure to mutsig2_images.part000000000059/F13B.5_2034_10000_0.4232_0.9989_0.6232.png
                gene_name: F13B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 33 percent done.
EXOC3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.504683e-02	ci left: 5.458961e-01	ci right 5.654714e-01	k: 5557	n:10000
Cons ci ratio: 1.262330e-02	ci left: 9.002141e-01	ci right 9.117481e-01	k: 9061	n:10000
KS ci ratio: 4.883062e-02	ci left: 3.822151e-01	ci right 4.014480e-01	k: 3918	n:10000
EXOC3L   10000 perm   2 sec   (4835 perm/sec)   p_kst 3.918000e-01   p_cons 9.061000e-01   p_joint 5.557000e-01

Outputting figure to mutsig2_images.part000000000059/EXOC3L.4_2293_10000_0.3918_0.9061_0.5557.png
                gene_name: EXOC3L
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 35 percent done.
EXOC3L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.239631e-01	ci left: 8.523830e-02	ci right 9.660131e-02	k: 908	n:10000
Cons ci ratio: 1.566850e-01	ci left: 5.426821e-02	ci right 6.359080e-02	k: 588	n:10000
KS ci ratio: 4.400121e-02	ci left: 4.326334e-01	ci right 4.522002e-01	k: 4424	n:10000
EXOC3L2   10000 perm   2 sec   (5174 perm/sec)   p_kst 4.424000e-01   p_cons 5.880000e-02   p_joint 9.080000e-02

Joint ci ratio: 7.352014e-02	ci left: 1.198558e-01	ci right 1.290537e-01	k: 2488	n:20000
Cons ci ratio: 1.106956e-01	ci left: 5.572506e-02	ci right 6.230387e-02	k: 1179	n:20000
KS ci ratio: 3.104698e-02	ci left: 4.365985e-01	ci right 4.504179e-01	k: 8870	n:20000
EXOC3L2   20000 perm   4 sec   (4927 perm/sec)   p_kst 4.435000e-01   p_cons 5.895000e-02   p_joint 1.244000e-01

Joint ci ratio: 5.708422e-02	ci left: 1.319422e-01	ci right 1.397285e-01	k: 4074	n:30000
Cons ci ratio: 9.073788e-02	ci left: 5.590313e-02	ci right 6.124943e-02	k: 1756	n:30000
KS ci ratio: 2.560539e-02	ci left: 4.329411e-01	ci right 4.442041e-01	k: 13157	n:30000
EXOC3L2   30000 perm   6 sec   (4817 perm/sec)   p_kst 4.385667e-01   p_cons 5.853333e-02   p_joint 1.358000e-01

Outputting figure to mutsig2_images.part000000000059/EXOC3L2.4_1266_30000_0.43857_0.058533_0.1358.png
                gene_name: EXOC3L2
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 37 percent done.
EXOC6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.793088e-02	ci left: 3.910755e-01	ci right 4.103824e-01	k: 4007	n:10000
Cons ci ratio: 1.202174e-01	ci left: 9.029438e-02	ci right 1.019421e-01	k: 960	n:10000
KS ci ratio: 2.095822e-02	ci left: 7.694204e-01	ci right 7.858176e-01	k: 7777	n:10000
EXOC6B   10000 perm   2 sec   (4460 perm/sec)   p_kst 7.777000e-01   p_cons 9.600000e-02   p_joint 4.007000e-01

Joint ci ratio: 3.369871e-02	ci left: 3.966902e-01	ci right 4.103379e-01	k: 8070	n:20000
Cons ci ratio: 8.763043e-02	ci left: 8.695066e-02	ci right 9.496872e-02	k: 1818	n:20000
KS ci ratio: 1.391366e-02	ci left: 7.931252e-01	ci right 8.042878e-01	k: 15975	n:20000
EXOC6B   20000 perm   5 sec   (4226 perm/sec)   p_kst 7.987500e-01   p_cons 9.090000e-02   p_joint 4.035000e-01

Outputting figure to mutsig2_images.part000000000059/EXOC6B.4_2524_20000_0.79875_0.0909_0.4035.png
                gene_name: EXOC6B
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 39 percent done.
EXOSC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.967515e-02	ci left: 4.840539e-01	ci right 5.037497e-01	k: 4939	n:10000
Cons ci ratio: 5.218770e-02	ci left: 3.511805e-01	ci right 3.701008e-01	k: 3606	n:10000
KS ci ratio: 3.650398e-02	ci left: 5.256658e-01	ci right 5.453136e-01	k: 5355	n:10000
EXOSC10   10000 perm   2 sec   (4014 perm/sec)   p_kst 5.355000e-01   p_cons 3.606000e-01   p_joint 4.939000e-01

Outputting figure to mutsig2_images.part000000000059/EXOSC10.4_2758_10000_0.5355_0.3606_0.4939.png
                gene_name: EXOSC10
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 41 percent done.
EYA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.829198e-02	ci left: 3.874911e-01	ci right 4.067689e-01	k: 3971	n:10000
Cons ci ratio: 4.149518e-02	ci left: 4.616756e-01	ci right 4.813410e-01	k: 4715	n:10000
KS ci ratio: 6.425987e-02	ci left: 2.624051e-01	ci right 2.799284e-01	k: 2711	n:10000
EYA2   10000 perm   2 sec   (5211 perm/sec)   p_kst 2.711000e-01   p_cons 4.715000e-01   p_joint 3.971000e-01

Outputting figure to mutsig2_images.part000000000059/EYA2.4_1677_10000_0.2711_0.4715_0.3971.png
                gene_name: EYA2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 43 percent done.
EZH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.714277e-02	ci left: 6.666264e-01	ci right 6.850711e-01	k: 6759	n:10000
Cons ci ratio: 1.855357e-02	ci left: 8.092795e-01	ci right 8.245354e-01	k: 8170	n:10000
KS ci ratio: 3.920980e-02	ci left: 4.899514e-01	ci right 5.096487e-01	k: 4998	n:10000
EZH2   10000 perm   2 sec   (4514 perm/sec)   p_kst 4.998000e-01   p_cons 8.170000e-01   p_joint 6.759000e-01

Outputting figure to mutsig2_images.part000000000059/EZH2.4_2332_10000_0.4998_0.817_0.6759.png
                gene_name: EZH2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 45 percent done.
F11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.191911e-01	ci left: 9.175384e-02	ci right 1.034818e-01	k: 975	n:10000
Cons ci ratio: 2.231802e-02	ci left: 7.466492e-01	ci right 7.636020e-01	k: 7552	n:10000
KS ci ratio: 1.907924e-01	ci left: 3.662531e-02	ci right 4.444524e-02	k: 404	n:10000
F11   10000 perm   2 sec   (4696 perm/sec)   p_kst 4.040000e-02   p_cons 7.552000e-01   p_joint 9.750000e-02

Joint ci ratio: 1.012254e-01	ci left: 6.620866e-02	ci right 7.331704e-02	k: 1394	n:20000
Cons ci ratio: 1.554229e-02	ci left: 7.548251e-01	ci right 7.666990e-01	k: 15216	n:20000
KS ci ratio: 1.334607e-01	ci left: 3.858415e-02	ci right 4.415019e-02	k: 826	n:20000
F11   20000 perm   5 sec   (4349 perm/sec)   p_kst 4.130000e-02   p_cons 7.608000e-01   p_joint 6.970000e-02

Joint ci ratio: 7.713315e-02	ci left: 7.620107e-02	ci right 8.234736e-02	k: 2377	n:30000
Cons ci ratio: 1.300156e-02	ci left: 7.469381e-01	ci right 7.567464e-01	k: 22556	n:30000
KS ci ratio: 1.096412e-01	ci left: 3.862178e-02	ci right 4.313435e-02	k: 1225	n:30000
F11   30000 perm   8 sec   (3909 perm/sec)   p_kst 4.083333e-02   p_cons 7.518667e-01   p_joint 7.923333e-02

Joint ci ratio: 5.910362e-02	ci left: 9.613919e-02	ci right 1.020192e-01	k: 3962	n:40000
Cons ci ratio: 1.127302e-02	ci left: 7.471590e-01	ci right 7.556545e-01	k: 30057	n:40000
KS ci ratio: 9.518537e-02	ci left: 3.873566e-02	ci right 4.263138e-02	k: 1626	n:40000
F11   40000 perm   11 sec   (3733 perm/sec)   p_kst 4.065000e-02   p_cons 7.514250e-01   p_joint 9.905000e-02

Outputting figure to mutsig2_images.part000000000059/F11.4_1934_40000_0.04065_0.75143_0.09905.png
                gene_name: F11
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 47 percent done.
FAAH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.612854e-03	ci left: 9.770621e-01	ci right 9.826535e-01	k: 9800	n:10000
Cons ci ratio: 2.586275e-02	ci left: 6.875840e-01	ci right 7.057013e-01	k: 6967	n:10000
KS ci ratio: 7.296213e-03	ci left: 9.628897e-01	ci right 9.700352e-01	k: 9666	n:10000
FAAH2   10000 perm   2 sec   (5117 perm/sec)   p_kst 9.666000e-01   p_cons 6.967000e-01   p_joint 9.800000e-01

Outputting figure to mutsig2_images.part000000000059/FAAH2.4_1643_10000_0.9666_0.6967_0.98.png
                gene_name: FAAH2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 49 percent done.
FADS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.806165e-02	ci left: 3.039169e-01	ci right 3.221921e-01	k: 3130	n:10000
Cons ci ratio: 1.322110e-01	ci left: 7.543425e-02	ci right 8.621143e-02	k: 807	n:10000
KS ci ratio: 2.817710e-02	ci left: 6.499155e-01	ci right 6.685916e-01	k: 6593	n:10000
FADS2   10000 perm   2 sec   (5999 perm/sec)   p_kst 6.593000e-01   p_cons 8.070000e-02   p_joint 3.130000e-01

Joint ci ratio: 4.867154e-02	ci left: 2.389031e-01	ci right 2.508712e-01	k: 4897	n:20000
Cons ci ratio: 9.406027e-02	ci left: 7.612963e-02	ci right 8.369304e-02	k: 1597	n:20000
KS ci ratio: 2.007599e-02	ci left: 6.492686e-01	ci right 6.624860e-01	k: 13118	n:20000
FADS2   20000 perm   4 sec   (4645 perm/sec)   p_kst 6.559000e-01   p_cons 7.985000e-02   p_joint 2.448500e-01

Outputting figure to mutsig2_images.part000000000059/FADS2.4_1383_20000_0.6559_0.07985_0.24485.png
                gene_name: FADS2
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 51 percent done.
FAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.743651e-02	ci left: 1.324713e-01	ci right 1.461396e-01	k: 1392	n:10000
Cons ci ratio: 1.014946e-01	ci left: 1.231736e-01	ci right 1.364429e-01	k: 1297	n:10000
KS ci ratio: 1.095497e-01	ci left: 1.072486e-01	ci right 1.197776e-01	k: 1134	n:10000
FAF1   10000 perm   2 sec   (5647 perm/sec)   p_kst 1.134000e-01   p_cons 1.297000e-01   p_joint 1.392000e-01

Joint ci ratio: 6.823194e-02	ci left: 1.367955e-01	ci right 1.465089e-01	k: 2832	n:20000
Cons ci ratio: 7.120254e-02	ci left: 1.268944e-01	ci right 1.363130e-01	k: 2631	n:20000
KS ci ratio: 7.734954e-02	ci left: 1.093810e-01	ci right 1.182316e-01	k: 2275	n:20000
FAF1   20000 perm   4 sec   (5035 perm/sec)   p_kst 1.137500e-01   p_cons 1.315500e-01   p_joint 1.416000e-01

Outputting figure to mutsig2_images.part000000000059/FAF1.4_2029_20000_0.11375_0.13155_0.1416.png
                gene_name: FAF1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 53 percent done.
EXOC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.660225e-03	ci left: 9.594273e-01	ci right 9.668997e-01	k: 9633	n:10000
KS ci ratio: 1.659824e-02	ci left: 8.408121e-01	ci right 8.549846e-01	k: 8480	n:10000
EXOC1   10000 perm   2 sec   (5386 perm/sec)   p_kst 8.480000e-01   p_cons 9.633000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/EXOC1.3_2757_10000_0.848_0.9633_1.png
                gene_name: EXOC1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
EXOG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.820846e-02	ci left: 6.494124e-01	ci right 6.680951e-01	k: 6588	n:10000
Cons ci ratio: 5.049971e-02	ci left: 3.663941e-01	ci right 3.854782e-01	k: 3759	n:10000
KS ci ratio: 2.462034e-02	ci left: 7.081598e-01	ci right 7.259136e-01	k: 7171	n:10000
EXOG   10000 perm   2 sec   (5328 perm/sec)   p_kst 7.171000e-01   p_cons 3.759000e-01   p_joint 6.588000e-01

Outputting figure to mutsig2_images.part000000000059/EXOG.3_1131_10000_0.7171_0.3759_0.6588.png
                gene_name: EXOG
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 57 percent done.
EXTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.906893e-02	ci left: 4.917510e-01	ci right 5.114481e-01	k: 5016	n:10000
Cons ci ratio: 5.692071e-02	ci left: 3.124482e-01	ci right 3.308558e-01	k: 3216	n:10000
KS ci ratio: 4.264498e-02	ci left: 4.480984e-01	ci right 4.677261e-01	k: 4579	n:10000
EXTL1   10000 perm   2 sec   (4810 perm/sec)   p_kst 4.579000e-01   p_cons 3.216000e-01   p_joint 5.016000e-01

Outputting figure to mutsig2_images.part000000000059/EXTL1.3_2075_10000_0.4579_0.3216_0.5016.png
                gene_name: EXTL1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 59 percent done.
F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.945480e-02	ci left: 6.295976e-01	ci right 6.485213e-01	k: 6391	n:10000
KS ci ratio: 1.317906e-02	ci left: 8.924146e-01	ci right 9.043522e-01	k: 8985	n:10000
F2   10000 perm   2 sec   (5056 perm/sec)   p_kst 8.985000e-01   p_cons 6.391000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/F2.3_1925_10000_0.8985_0.6391_1.png
                gene_name: F2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
F2RL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.197123e-03	ci left: 9.433622e-01	ci right 9.521746e-01	k: 9479	n:10000
Cons ci ratio: 2.633479e-02	ci left: 6.798232e-01	ci right 6.980666e-01	k: 6890	n:10000
KS ci ratio: 1.374239e-02	ci left: 8.843180e-01	ci right 8.966535e-01	k: 8906	n:10000
F2RL2   10000 perm   2 sec   (5533 perm/sec)   p_kst 8.906000e-01   p_cons 6.890000e-01   p_joint 9.479000e-01

Outputting figure to mutsig2_images.part000000000059/F2RL2.3_1133_10000_0.8906_0.689_0.9479.png
                gene_name: F2RL2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 63 percent done.
F7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.616784e-02	ci left: 5.302713e-01	ci right 5.499054e-01	k: 5401	n:10000
Cons ci ratio: 5.855114e-02	ci left: 3.003467e-01	ci right 3.185644e-01	k: 3094	n:10000
KS ci ratio: 4.375241e-02	ci left: 4.354264e-01	ci right 4.550056e-01	k: 4452	n:10000
F7   10000 perm   2 sec   (4847 perm/sec)   p_kst 4.452000e-01   p_cons 3.094000e-01   p_joint 5.401000e-01

Outputting figure to mutsig2_images.part000000000059/F7.3_1437_10000_0.4452_0.3094_0.5401.png
                gene_name: F7
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 65 percent done.
FA2H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.215508e-02	ci left: 7.493800e-01	ci right 7.662695e-01	k: 7579	n:10000
KS ci ratio: 2.889536e-02	ci left: 6.384467e-01	ci right 6.572671e-01	k: 6479	n:10000
FA2H   10000 perm   2 sec   (6205 perm/sec)   p_kst 6.479000e-01   p_cons 7.579000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/FA2H.3_1147_10000_0.6479_0.7579_1.png
                gene_name: FA2H
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
FAF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.467681e-02	ci left: 3.301173e-01	ci right 3.487763e-01	k: 3394	n:10000
Cons ci ratio: 5.409676e-02	ci left: 3.348846e-01	ci right 3.536063e-01	k: 3442	n:10000
KS ci ratio: 4.919105e-02	ci left: 3.787315e-01	ci right 3.979336e-01	k: 3883	n:10000
FAF2   10000 perm   2 sec   (5353 perm/sec)   p_kst 3.883000e-01   p_cons 3.442000e-01   p_joint 3.394000e-01

Outputting figure to mutsig2_images.part000000000059/FAF2.3_1382_10000_0.3883_0.3442_0.3394.png
                gene_name: FAF2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 69 percent done.
FAIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.558798e-02	ci left: 8.566152e-01	ci right 8.701724e-01	k: 8635	n:10000
KS ci ratio: 1.592340e-02	ci left: 8.514124e-01	ci right 8.651781e-01	k: 8584	n:10000
FAIM2   10000 perm   2 sec   (5578 perm/sec)   p_kst 8.584000e-01   p_cons 8.635000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/FAIM2.3_999_10000_0.8584_0.8635_1.png
                gene_name: FAIM2
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
FAM102A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.441376e-02	ci left: 4.280456e-01	ci right 4.475906e-01	k: 4378	n:10000
Cons ci ratio: 1.510206e-02	ci left: 8.640678e-01	ci right 8.773155e-01	k: 8708	n:10000
KS ci ratio: 7.974606e-02	ci left: 1.867820e-01	ci right 2.023963e-01	k: 1945	n:10000
FAM102A   10000 perm   2 sec   (5253 perm/sec)   p_kst 1.945000e-01   p_cons 8.708000e-01   p_joint 4.378000e-01

Outputting figure to mutsig2_images.part000000000059/FAM102A.3_1199_10000_0.1945_0.8708_0.4378.png
                gene_name: FAM102A
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 73 percent done.
EXO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.687240e-02	ci left: 5.206607e-01	ci right 5.403215e-01	k: 5305	n:10000
Cons ci ratio: 2.381504e-02	ci left: 7.215864e-01	ci right 7.390793e-01	k: 7304	n:10000
KS ci ratio: 3.969896e-02	ci left: 4.837540e-01	ci right 5.034497e-01	k: 4936	n:10000
EXO1   10000 perm   2 sec   (4196 perm/sec)   p_kst 4.936000e-01   p_cons 7.304000e-01   p_joint 5.305000e-01

Outputting figure to mutsig2_images.part000000000059/EXO1.2_2593_10000_0.4936_0.7304_0.5305.png
                gene_name: EXO1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 75 percent done.
EXOC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.228697e-02	ci left: 9.048375e-01	ci right 9.161220e-01	k: 9106	n:10000
Cons ci ratio: 3.153199e-02	ci left: 5.974476e-01	ci right 6.166900e-01	k: 6071	n:10000
KS ci ratio: 3.246516e-02	ci left: 5.833956e-01	ci right 6.027502e-01	k: 5931	n:10000
EXOC5   10000 perm   2 sec   (5133 perm/sec)   p_kst 5.931000e-01   p_cons 6.071000e-01   p_joint 9.106000e-01

Outputting figure to mutsig2_images.part000000000059/EXOC5.2_2199_10000_0.5931_0.6071_0.9106.png
                gene_name: EXOC5
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 76 percent done.
EXOC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.079719e-02	ci left: 1.499203e-01	ci right 1.642801e-01	k: 1570	n:10000
Cons ci ratio: 2.604030e-02	ci left: 6.846608e-01	ci right 7.028262e-01	k: 6938	n:10000
KS ci ratio: 1.213381e-01	ci left: 8.873809e-02	ci right 1.002994e-01	k: 944	n:10000
EXOC7   10000 perm   2 sec   (6071 perm/sec)   p_kst 9.440000e-02   p_cons 6.938000e-01   p_joint 1.570000e-01

Joint ci ratio: 6.163978e-02	ci left: 1.629902e-01	ci right 1.734064e-01	k: 3363	n:20000
Cons ci ratio: 1.816286e-02	ci left: 6.931929e-01	ci right 7.059490e-01	k: 13992	n:20000
KS ci ratio: 8.713076e-02	ci left: 8.788185e-02	ci right 9.593725e-02	k: 1837	n:20000
EXOC7   20000 perm   4 sec   (5267 perm/sec)   p_kst 9.185000e-02   p_cons 6.996000e-01   p_joint 1.681500e-01

Outputting figure to mutsig2_images.part000000000059/EXOC7.2_2288_20000_0.09185_0.6996_0.16815.png
                gene_name: EXOC7
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 78 percent done.
EXOC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.733853e-02	ci left: 8.290021e-01	ci right 8.436014e-01	k: 8364	n:10000
Cons ci ratio: 2.611998e-02	ci left: 6.833505e-01	ci right 7.015373e-01	k: 6925	n:10000
KS ci ratio: 3.130776e-02	ci left: 6.008614e-01	ci right 6.200742e-01	k: 6105	n:10000
EXOC8   10000 perm   2 sec   (4727 perm/sec)   p_kst 6.105000e-01   p_cons 6.925000e-01   p_joint 8.364000e-01

Outputting figure to mutsig2_images.part000000000059/EXOC8.2_2182_10000_0.6105_0.6925_0.8364.png
                gene_name: EXOC8
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 80 percent done.
EXOSC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.711004e-02	ci left: 8.326658e-01	ci right 8.471356e-01	k: 8400	n:10000
KS ci ratio: 1.502819e-02	ci left: 8.651913e-01	ci right 8.783912e-01	k: 8719	n:10000
EXOSC2   10000 perm   2 sec   (5889 perm/sec)   p_kst 8.719000e-01   p_cons 8.400000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/EXOSC2.2_918_10000_0.8719_0.84_1.png
                gene_name: EXOSC2
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
EXOSC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.647618e-02	ci left: 6.775056e-01	ci right 6.957856e-01	k: 6867	n:10000
Cons ci ratio: 4.991301e-02	ci left: 3.718655e-01	ci right 3.910036e-01	k: 3814	n:10000
KS ci ratio: 7.019825e-02	ci left: 2.292855e-01	ci right 2.460676e-01	k: 2376	n:10000
EXOSC5   10000 perm   1 sec   (6987 perm/sec)   p_kst 2.376000e-01   p_cons 3.814000e-01   p_joint 6.867000e-01

Outputting figure to mutsig2_images.part000000000059/EXOSC5.2_732_10000_0.2376_0.3814_0.6867.png
                gene_name: EXOSC5
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 84 percent done.
EZR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.264082e-03	ci left: 9.861030e-01	ci right 9.904055e-01	k: 9884	n:10000
Cons ci ratio: 2.193174e-02	ci left: 7.531230e-01	ci right 7.699244e-01	k: 7616	n:10000
KS ci ratio: 1.886917e-02	ci left: 8.041002e-01	ci right 8.195177e-01	k: 8119	n:10000
EZR   10000 perm   2 sec   (5924 perm/sec)   p_kst 8.119000e-01   p_cons 7.616000e-01   p_joint 9.884000e-01

Outputting figure to mutsig2_images.part000000000059/EZR.2_1813_10000_0.8119_0.7616_0.9884.png
                gene_name: EZR
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 86 percent done.
F12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.446282e-02	ci left: 1.399172e-01	ci right 1.538892e-01	k: 1468	n:10000
Cons ci ratio: 5.992136e-02	ci left: 2.906312e-01	ci right 3.086857e-01	k: 2996	n:10000
KS ci ratio: 2.276270e-01	ci left: 2.551545e-02	ci right 3.216281e-02	k: 287	n:10000
F12   10000 perm   2 sec   (5949 perm/sec)   p_kst 2.870000e-02   p_cons 2.996000e-01   p_joint 1.468000e-01

Joint ci ratio: 8.873490e-02	ci left: 8.494170e-02	ci right 9.287829e-02	k: 1777	n:20000
Cons ci ratio: 4.409823e-02	ci left: 2.769130e-01	ci right 2.894501e-01	k: 5663	n:20000
KS ci ratio: 1.588432e-01	ci left: 2.719860e-02	ci right 3.193948e-02	k: 590	n:20000
F12   20000 perm   4 sec   (5210 perm/sec)   p_kst 2.950000e-02   p_cons 2.831500e-01   p_joint 8.885000e-02

Joint ci ratio: 5.079555e-02	ci left: 1.614095e-01	ci right 1.698553e-01	k: 4968	n:30000
Cons ci ratio: 3.592352e-02	ci left: 2.790012e-01	ci right 2.892407e-01	k: 8523	n:30000
KS ci ratio: 1.303413e-01	ci left: 2.735610e-02	ci right 3.120245e-02	k: 877	n:30000
F12   30000 perm   6 sec   (4935 perm/sec)   p_kst 2.923333e-02   p_cons 2.841000e-01   p_joint 1.656000e-01

Joint ci ratio: 5.119145e-02	ci left: 1.245675e-01	ci right 1.311366e-01	k: 5113	n:40000
Cons ci ratio: 3.114005e-02	ci left: 2.793105e-01	ci right 2.881709e-01	k: 11349	n:40000
KS ci ratio: 1.134630e-01	ci left: 2.732867e-02	ci right 3.064018e-02	k: 1158	n:40000
F12   40000 perm   8 sec   (4765 perm/sec)   p_kst 2.895000e-02   p_cons 2.837250e-01   p_joint 1.278250e-01

Joint ci ratio: 4.292314e-02	ci left: 1.398829e-01	ci right 1.460387e-01	k: 7147	n:50000
Cons ci ratio: 2.784636e-02	ci left: 2.798708e-01	ci right 2.877943e-01	k: 14191	n:50000
KS ci ratio: 1.010100e-01	ci left: 2.776112e-02	ci right 3.073387e-02	k: 1461	n:50000
F12   50000 perm   11 sec   (4514 perm/sec)   p_kst 2.922000e-02   p_cons 2.838200e-01   p_joint 1.429400e-01

Joint ci ratio: 4.286142e-02	ci left: 1.197214e-01	ci right 1.249818e-01	k: 7340	n:60000
Cons ci ratio: 2.545186e-02	ci left: 2.797133e-01	ci right 2.869410e-01	k: 16999	n:60000
KS ci ratio: 9.181640e-02	ci left: 2.812799e-02	ci right 3.085111e-02	k: 1768	n:60000
F12   60000 perm   14 sec   (4340 perm/sec)   p_kst 2.946667e-02   p_cons 2.833167e-01   p_joint 1.223333e-01

Outputting figure to mutsig2_images.part000000000059/F12.2_1904_60000_0.029467_0.28332_0.12233.png
                gene_name: F12
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 88 percent done.
F3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.528161e-02	ci left: 5.425901e-01	ci right 5.621794e-01	k: 5524	n:10000
KS ci ratio: 2.567934e-02	ci left: 6.906085e-01	ci right 7.086750e-01	k: 6997	n:10000
F3   10000 perm   2 sec   (6605 perm/sec)   p_kst 6.997000e-01   p_cons 5.524000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/F3.2_912_10000_0.6997_0.5524_1.png
                gene_name: F3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
FAAH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.599437e-02	ci left: 2.521161e-01	ci right 2.694235e-01	k: 2607	n:10000
Cons ci ratio: 9.707249e-02	ci left: 1.333527e-01	ci right 1.470577e-01	k: 1401	n:10000
KS ci ratio: 2.626723e-02	ci left: 6.809317e-01	ci right 6.991575e-01	k: 6901	n:10000
FAAH   10000 perm   2 sec   (5328 perm/sec)   p_kst 6.901000e-01   p_cons 1.401000e-01   p_joint 2.607000e-01

Outputting figure to mutsig2_images.part000000000059/FAAH.2_1800_10000_0.6901_0.1401_0.2607.png
                gene_name: FAAH
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 92 percent done.
FABP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.838341e-03	ci left: 9.473144e-01	ci right 9.558201e-01	k: 9517	n:10000
KS ci ratio: 2.909192e-02	ci left: 6.353290e-01	ci right 6.541866e-01	k: 6448	n:10000
FABP2   10000 perm   2 sec   (5522 perm/sec)   p_kst 6.448000e-01   p_cons 9.517000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/FABP2.2_415_10000_0.6448_0.9517_1.png
                gene_name: FABP2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
FADS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.950796e-02	ci left: 2.328414e-01	ci right 2.497096e-01	k: 2412	n:10000
Cons ci ratio: 6.275020e-02	ci left: 2.718089e-01	ci right 2.895190e-01	k: 2806	n:10000
KS ci ratio: 5.392946e-02	ci left: 3.362752e-01	ci right 3.550148e-01	k: 3456	n:10000
FADS3   10000 perm   2 sec   (6437 perm/sec)   p_kst 3.456000e-01   p_cons 2.806000e-01   p_joint 2.412000e-01

Outputting figure to mutsig2_images.part000000000059/FADS3.2_1386_10000_0.3456_0.2806_0.2412.png
                gene_name: FADS3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 96 percent done.
FAH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.915936e-03	ci left: 9.569143e-01	ci right 9.646143e-01	k: 9609	n:10000
KS ci ratio: 1.093240e-02	ci left: 9.226548e-01	ci right 9.328943e-01	k: 9279	n:10000
FAH   10000 perm   2 sec   (6447 perm/sec)   p_kst 9.279000e-01   p_cons 9.609000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/FAH.2_1316_10000_0.9279_0.9609_1.png
                gene_name: FAH
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
FAIM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.164788e-02	ci left: 7.578789e-01	ci right 7.745658e-01	k: 7663	n:10000
KS ci ratio: 9.230038e-02	ci left: 1.457019e-01	ci right 1.599010e-01	k: 1527	n:10000
FAIM3   10000 perm   1 sec   (6788 perm/sec)   p_kst 1.527000e-01   p_cons 7.663000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000059/FAIM3.2_1205_10000_0.1527_0.7663_1.png
                gene_name: FAIM3
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000059
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 59 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 9893932: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000060> was used as the working directory.
Started at Sat Oct  6 00:07:10 2012
Results reported at Sat Oct  6 01:18:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000060.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000060.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 60  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000060.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   4362.38 sec.
    Max Memory :      3621 MB
    Max Swap   :      5895 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
60
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 60
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 60: processing genes 5320 - 5409
Calculating significance of each gene.
Using projection method.
5320	FAM104B	2.518463e-02
5321	FAM105A	9.733588e-02
5322	FAM105B	2.973822e-01
5323	FAM107A	2.184651e-01
5324	FAM107B	1.147512e-01
5325	FAM108A1	1
5326	FAM108B1	1.347168e-01
5327	FAM108C1	4.291852e-01
5328	FAM109A	2.862485e-01
5329	FAM109B	4.608163e-01
5330	FAM110A	1
5331	FAM110B	1.494922e-01
5332	FAM110C	1
5333	FAM111A	5.568436e-01
In gene FAM111B the following bins exceed PROBCAP:
    COAD-AA-A00K	categ 6	N = 2213    n = 1	mu =   5.86e-07
5334	FAM111B	8.060789e-02
5335	FAM113A	1
5336	FAM113B	5.662727e-02
5337	FAM114A1	5.698484e-02
5338	FAM114A2	9.182906e-01
5339	FAM115A	1
5340	FAM115C	4.268152e-01
5341	FAM116A	9.188596e-02
5342	FAM116B	1
5343	FAM117A	6.930435e-01
5344	FAM117B	5.055762e-01
5345	FAM118A	7.914689e-01
5346	FAM118B	4.863612e-01
5347	FAM119A	2.521375e-01
5348	FAM119B	1
5349	FAM120A	8.689843e-01
5350	FAM120AOS	6.631621e-01
5351	FAM120B	1.537102e-01
5352	FAM120C	9.474603e-01
5353	FAM122A	1
5354	FAM122B	5.664491e-01
5355	FAM122C	1
5356	FAM123A	5.977439e-01
In gene FAM123B the following bins exceed PROBCAP:
    COAD-AA-3530	categ 6	N = 3299    n = 1	mu =   1.97e-07
    COAD-AA-3548	categ 6	N = 3353    n = 1	mu =   1.03e-07
    COAD-AA-3554	categ 6	N = 3353    n = 1	mu =   7.59e-07
    READ-AG-3584	categ 6	N = 3353    n = 1	mu =   1.72e-07
5357	FAM123B	2.775558e-15
5358	FAM123C	6.384200e-01
5359	FAM124A	5.467957e-01
5360	FAM124B	2.940824e-01
5361	FAM125A	1
5362	FAM125B	4.303583e-01
5363	FAM126A	1.534201e-02
5364	FAM126B	9.373585e-01
5365	FAM127A	5.488996e-01
5366	FAM127B	3.216699e-02
5367	FAM127C	4.075642e-01
5368	FAM128A	1
5369	FAM129A	8.734972e-01
5370	FAM129B	9.006108e-01
5371	FAM129C	2.897922e-01
5372	FAM131A	4.392697e-01
5373	FAM131B	8.161951e-01
5374	FAM131C	7.128730e-01
5375	FAM132A	1
5376	FAM133A	4.688934e-05
5377	FAM133B	1
5378	FAM134A	2.129390e-01
5379	FAM134B	2.047567e-01
5380	FAM134C	6.174701e-01
5381	FAM135A	3.542522e-01
5382	FAM135B	5.468709e-04
5383	FAM136A	1
5384	FAM13A	7.493758e-01
5385	FAM13B	4.351627e-01
5386	FAM13C	2.852190e-01
5387	FAM149A	2.113352e-01
5388	FAM150A	1
5389	FAM150B	1
5390	FAM151A	9.043448e-01
5391	FAM151B	3.235910e-01
5392	FAM153A	4.931741e-01
5393	FAM153B	8.013323e-01
5394	FAM153C	1
5395	FAM154A	2.046787e-01
5396	FAM154B	2.552883e-01
5397	FAM155A	4.206135e-01
5398	FAM155B	6.733527e-01
5399	FAM158A	1
5400	FAM159A	1
5401	FAM160A2	9.467234e-01
5402	FAM160B1	7.603266e-01
5403	FAM160B2	1
5404	FAM161A	7.619180e-01
5405	FAM161B	9.626522e-01
5406	FAM162A	2.934376e-01
5407	FAM162B	1.646735e-01
5408	FAM163A	1.429227e-02
5409	FAM163B	9.025335e-02
Done

Running MutSig 2:
Scatter job 60: processing genes 5320 - 5409
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FAM123B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.173503e-01	ci left: 2.806894e-02	ci right 3.500749e-02	k: 314	n:10000
Cons ci ratio: 2.337403e-02	ci left: 7.289600e-01	ci right 7.463014e-01	k: 7377	n:10000
KS ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
FAM123B   10000 perm   3 sec   (3543 perm/sec)   p_kst 1.400000e-03   p_cons 7.377000e-01   p_joint 3.140000e-02

Joint ci ratio: 2.234803e-01	ci left: 1.345565e-02	ci right 1.688741e-02	k: 302	n:20000
Cons ci ratio: 1.660717e-02	ci left: 7.296808e-01	ci right 7.419505e-01	k: 14717	n:20000
KS ci ratio: 8.168860e-01	ci left: 6.894885e-04	ci right 1.664942e-03	k: 22	n:20000
FAM123B   20000 perm   9 sec   (2246 perm/sec)   p_kst 1.100000e-03   p_cons 7.358500e-01   p_joint 1.510000e-02

Joint ci ratio: 2.478852e-01	ci left: 7.241974e-03	ci right 9.321610e-03	k: 247	n:30000
Cons ci ratio: 1.358359e-02	ci left: 7.301343e-01	ci right 7.401534e-01	k: 22055	n:30000
KS ci ratio: 6.819977e-01	ci left: 7.297101e-04	ci right 1.505484e-03	k: 32	n:30000
FAM123B   30000 perm   12 sec   (2476 perm/sec)   p_kst 1.066667e-03   p_cons 7.351667e-01   p_joint 8.233333e-03

Joint ci ratio: 2.685090e-01	ci left: 4.588736e-03	ci right 6.034512e-03	k: 211	n:40000
Cons ci ratio: 1.170990e-02	ci left: 7.326056e-01	ci right 7.412599e-01	k: 29478	n:40000
KS ci ratio: 5.654566e-01	ci left: 8.634696e-04	ci right 1.562198e-03	k: 47	n:40000
FAM123B   40000 perm   15 sec   (2619 perm/sec)   p_kst 1.175000e-03   p_cons 7.369500e-01   p_joint 5.275000e-03

Joint ci ratio: 3.446878e-01	ci left: 2.136179e-03	ci right 3.043112e-03	k: 128	n:50000
Cons ci ratio: 1.060851e-02	ci left: 7.280542e-01	ci right 7.358389e-01	k: 36598	n:50000
KS ci ratio: 5.015933e-01	ci left: 9.158475e-04	ci right 1.544372e-03	k: 60	n:50000
FAM123B   50000 perm   18 sec   (2706 perm/sec)   p_kst 1.200000e-03   p_cons 7.319600e-01   p_joint 2.560000e-03

Joint ci ratio: 2.037148e-01	ci left: 5.508443e-03	ci right 6.773375e-03	k: 367	n:60000
Cons ci ratio: 9.829328e-03	ci left: 7.224957e-01	ci right 7.296491e-01	k: 43565	n:60000
KS ci ratio: 4.523559e-01	ci left: 9.685522e-04	ci right 1.548093e-03	k: 74	n:60000
FAM123B   60000 perm   22 sec   (2737 perm/sec)   p_kst 1.233333e-03   p_cons 7.260833e-01   p_joint 6.116667e-03

Joint ci ratio: 2.172717e-01	ci left: 4.125719e-03	ci right 5.144584e-03	k: 323	n:70000
Cons ci ratio: 9.098508e-03	ci left: 7.228372e-01	ci right 7.294583e-01	k: 50831	n:70000
KS ci ratio: 4.200039e-01	ci left: 9.828124e-04	ci right 1.517057e-03	k: 86	n:70000
FAM123B   70000 perm   25 sec   (2757 perm/sec)   p_kst 1.228571e-03   p_cons 7.261571e-01   p_joint 4.614286e-03

Joint ci ratio: 1.543296e-01	ci left: 7.382313e-03	ci right 8.628764e-03	k: 639	n:80000
Cons ci ratio: 8.498462e-03	ci left: 7.236350e-01	ci right 7.298235e-01	k: 58139	n:80000
KS ci ratio: 3.878879e-01	ci left: 1.028441e-03	ci right 1.533844e-03	k: 101	n:80000
FAM123B   80000 perm   29 sec   (2720 perm/sec)   p_kst 1.262500e-03   p_cons 7.267375e-01   p_joint 7.987500e-03

Joint ci ratio: 1.628089e-01	ci left: 5.878761e-03	ci right 6.931211e-03	k: 575	n:90000
Cons ci ratio: 8.030224e-03	ci left: 7.229284e-01	ci right 7.287681e-01	k: 65327	n:90000
KS ci ratio: 3.653062e-01	ci left: 1.044954e-03	ci right 1.521460e-03	k: 114	n:90000
FAM123B   90000 perm   33 sec   (2689 perm/sec)   p_kst 1.266667e-03   p_cons 7.258556e-01   p_joint 6.388889e-03

Joint ci ratio: 1.714550e-01	ci left: 4.754051e-03	ci right 5.655015e-03	k: 519	n:100000
Cons ci ratio: 7.615186e-03	ci left: 7.232342e-01	ci right 7.287727e-01	k: 72601	n:100000
KS ci ratio: 3.546818e-01	ci left: 1.004124e-03	ci right 1.445625e-03	k: 121	n:100000
FAM123B   100000 perm   37 sec   (2687 perm/sec)   p_kst 1.210000e-03   p_cons 7.260100e-01   p_joint 5.190000e-03

Joint ci ratio: 1.706733e-01	ci left: 4.365297e-03	ci right 5.188420e-03	k: 524	n:110000
Cons ci ratio: 7.271599e-03	ci left: 7.227703e-01	ci right 7.280542e-01	k: 79796	n:110000
KS ci ratio: 3.476413e-01	ci left: 9.542812e-04	ci right 1.363661e-03	k: 126	n:110000
FAM123B   110000 perm   41 sec   (2677 perm/sec)   p_kst 1.145455e-03   p_cons 7.254182e-01   p_joint 4.763636e-03

Joint ci ratio: 1.707075e-01	ci left: 4.001457e-03	ci right 4.756137e-03	k: 524	n:120000
Cons ci ratio: 6.968026e-03	ci left: 7.225393e-01	ci right 7.275998e-01	k: 87009	n:120000
KS ci ratio: 3.287630e-01	ci left: 9.891533e-04	ci right 1.385587e-03	k: 141	n:120000
FAM123B   120000 perm   45 sec   (2671 perm/sec)   p_kst 1.175000e-03   p_cons 7.250750e-01   p_joint 4.366667e-03

Joint ci ratio: 1.678710e-01	ci left: 3.826218e-03	ci right 4.534641e-03	k: 542	n:130000
Cons ci ratio: 6.695019e-03	ci left: 7.226179e-01	ci right 7.274797e-01	k: 94257	n:130000
KS ci ratio: 3.198807e-01	ci left: 9.695923e-04	ci right 1.345537e-03	k: 149	n:130000
FAM123B   130000 perm   49 sec   (2652 perm/sec)   p_kst 1.146154e-03   p_cons 7.250538e-01   p_joint 4.169231e-03

Joint ci ratio: 1.791778e-01	ci left: 3.101835e-03	ci right 3.719015e-03	k: 476	n:140000
Cons ci ratio: 6.449812e-03	ci left: 7.228104e-01	ci right 7.274946e-01	k: 101522	n:140000
KS ci ratio: 3.022520e-01	ci left: 1.018883e-03	ci right 1.387990e-03	k: 167	n:140000
FAM123B   140000 perm   53 sec   (2626 perm/sec)   p_kst 1.192857e-03   p_cons 7.251571e-01   p_joint 3.400000e-03

Joint ci ratio: 1.702950e-01	ci left: 3.220200e-03	ci right 3.825908e-03	k: 527	n:150000
Cons ci ratio: 5.834027e-03	ci left: 7.484157e-01	ci right 7.528013e-01	k: 112592	n:150000
KS ci ratio: 2.944704e-01	ci left: 1.006466e-03	ci right 1.359936e-03	k: 176	n:150000
FAM123B   150000 perm   57 sec   (2611 perm/sec)   p_kst 1.173333e-03   p_cons 7.506133e-01   p_joint 3.513333e-03

Joint ci ratio: 1.670137e-01	ci left: 3.144637e-03	ci right 3.723587e-03	k: 548	n:160000
Cons ci ratio: 5.725358e-03	ci left: 7.433957e-01	ci right 7.476704e-01	k: 119286	n:160000
KS ci ratio: 2.872603e-01	ci left: 9.957083e-04	ci right 1.335284e-03	k: 185	n:160000
FAM123B   160000 perm   62 sec   (2594 perm/sec)   p_kst 1.156250e-03   p_cons 7.455375e-01   p_joint 3.425000e-03

Joint ci ratio: 1.752251e-01	ci left: 2.678072e-03	ci right 3.197932e-03	k: 498	n:170000
Cons ci ratio: 5.553327e-03	ci left: 7.435344e-01	ci right 7.476808e-01	k: 126754	n:170000
KS ci ratio: 2.736187e-01	ci left: 1.041050e-03	ci right 1.376333e-03	k: 204	n:170000
FAM123B   170000 perm   66 sec   (2577 perm/sec)   p_kst 1.200000e-03   p_cons 7.456118e-01   p_joint 2.929412e-03

Joint ci ratio: 1.241164e-01	ci left: 5.168929e-03	ci right 5.858255e-03	k: 991	n:180000
Cons ci ratio: 5.618501e-03	ci left: 7.279871e-01	ci right 7.320943e-01	k: 131408	n:180000
KS ci ratio: 2.635251e-01	ci left: 1.066122e-03	ci right 1.394725e-03	k: 220	n:180000
FAM123B   180000 perm   70 sec   (2559 perm/sec)   p_kst 1.222222e-03   p_cons 7.300444e-01   p_joint 5.505556e-03

Joint ci ratio: 1.211620e-01	ci left: 5.146860e-03	ci right 5.815733e-03	k: 1040	n:190000
Cons ci ratio: 5.471748e-03	ci left: 7.278183e-01	ci right 7.318168e-01	k: 138666	n:190000
KS ci ratio: 2.572028e-01	ci left: 1.064127e-03	ci right 1.382984e-03	k: 231	n:190000
FAM123B   190000 perm   75 sec   (2536 perm/sec)   p_kst 1.215789e-03   p_cons 7.298211e-01   p_joint 5.473684e-03

Joint ci ratio: 1.224866e-01	ci left: 4.782814e-03	ci right 5.411662e-03	k: 1018	n:200000
Cons ci ratio: 5.327535e-03	ci left: 7.282890e-01	ci right 7.321843e-01	k: 146048	n:200000
KS ci ratio: 2.523566e-01	ci left: 1.053046e-03	ci right 1.361703e-03	k: 240	n:200000
FAM123B   200000 perm   79 sec   (2517 perm/sec)   p_kst 1.200000e-03   p_cons 7.302400e-01   p_joint 5.090000e-03

Joint ci ratio: 1.197007e-01	ci left: 4.776707e-03	ci right 5.389457e-03	k: 1066	n:210000
Cons ci ratio: 5.196214e-03	ci left: 7.285586e-01	ci right 7.323589e-01	k: 153397	n:210000
KS ci ratio: 2.434261e-01	ci left: 1.083295e-03	ci right 1.387884e-03	k: 258	n:210000
FAM123B   210000 perm   85 sec   (2484 perm/sec)   p_kst 1.228571e-03   p_cons 7.304619e-01   p_joint 5.076190e-03

Joint ci ratio: 1.176280e-01	ci left: 4.727177e-03	ci right 5.322343e-03	k: 1104	n:220000
Cons ci ratio: 5.074144e-03	ci left: 7.288046e-01	ci right 7.325166e-01	k: 160746	n:220000
KS ci ratio: 2.384166e-01	ci left: 1.081036e-03	ci right 1.377811e-03	k: 269	n:220000
FAM123B   220000 perm   89 sec   (2466 perm/sec)   p_kst 1.222727e-03   p_cons 7.306636e-01   p_joint 5.018182e-03

Joint ci ratio: 1.115182e-01	ci left: 5.045382e-03	ci right 5.645448e-03	k: 1228	n:230000
Cons ci ratio: 4.964401e-03	ci left: 7.287034e-01	ci right 7.323343e-01	k: 168020	n:230000
KS ci ratio: 2.320563e-01	ci left: 1.095410e-03	ci right 1.386958e-03	k: 284	n:230000
FAM123B   230000 perm   94 sec   (2450 perm/sec)   p_kst 1.234783e-03   p_cons 7.305217e-01   p_joint 5.339130e-03

Joint ci ratio: 1.095329e-01	ci left: 5.017470e-03	ci right 5.602908e-03	k: 1273	n:240000
Cons ci ratio: 4.856852e-03	ci left: 7.289872e-01	ci right 7.325405e-01	k: 175384	n:240000
KS ci ratio: 2.273202e-01	ci left: 1.096891e-03	ci right 1.382040e-03	k: 296	n:240000
FAM123B   240000 perm   99 sec   (2413 perm/sec)   p_kst 1.233333e-03   p_cons 7.307667e-01   p_joint 5.304167e-03

Joint ci ratio: 1.073640e-01	ci left: 5.019130e-03	ci right 5.592431e-03	k: 1325	n:250000
Cons ci ratio: 4.758563e-03	ci left: 7.290366e-01	ci right 7.325180e-01	k: 182695	n:250000
KS ci ratio: 2.239539e-01	ci left: 1.086980e-03	ci right 1.364791e-03	k: 305	n:250000
FAM123B   250000 perm   105 sec   (2391 perm/sec)   p_kst 1.220000e-03   p_cons 7.307800e-01   p_joint 5.300000e-03

Joint ci ratio: 1.015015e-01	ci left: 5.414225e-03	ci right 5.996876e-03	k: 1482	n:260000
Cons ci ratio: 4.668837e-03	ci left: 7.288440e-01	ci right 7.322586e-01	k: 189944	n:260000
KS ci ratio: 2.193428e-01	ci left: 1.092398e-03	ci right 1.365070e-03	k: 318	n:260000
FAM123B   260000 perm   110 sec   (2369 perm/sec)   p_kst 1.223077e-03   p_cons 7.305538e-01   p_joint 5.700000e-03

Joint ci ratio: 9.094905e-02	ci left: 6.522427e-03	ci right 7.147489e-03	k: 1844	n:270000
Cons ci ratio: 4.583438e-03	ci left: 7.287144e-01	ci right 7.320658e-01	k: 197206	n:270000
KS ci ratio: 2.134023e-01	ci left: 1.114995e-03	ci right 1.384783e-03	k: 336	n:270000
FAM123B   270000 perm   115 sec   (2351 perm/sec)   p_kst 1.244444e-03   p_cons 7.303926e-01   p_joint 6.829630e-03

Joint ci ratio: 9.787335e-02	ci left: 5.417525e-03	ci right 5.978495e-03	k: 1594	n:280000
Cons ci ratio: 4.500722e-03	ci left: 7.287558e-01	ci right 7.320466e-01	k: 204513	n:280000
KS ci ratio: 2.103058e-01	ci left: 1.108992e-03	ci right 1.372934e-03	k: 346	n:280000
FAM123B   280000 perm   120 sec   (2334 perm/sec)   p_kst 1.235714e-03   p_cons 7.304036e-01   p_joint 5.692857e-03

Joint ci ratio: 9.625798e-02	ci left: 5.412399e-03	ci right 5.963067e-03	k: 1648	n:290000
Cons ci ratio: 4.421360e-03	ci left: 7.288811e-01	ci right 7.321143e-01	k: 211845	n:290000
KS ci ratio: 2.079243e-01	ci left: 1.096892e-03	ci right 1.354621e-03	k: 354	n:290000
FAM123B   290000 perm   126 sec   (2310 perm/sec)   p_kst 1.220690e-03   p_cons 7.305000e-01   p_joint 5.682759e-03

Joint ci ratio: 9.455266e-02	ci left: 5.427216e-03	ci right 5.969067e-03	k: 1708	n:300000
Cons ci ratio: 4.348187e-03	ci left: 7.288049e-01	ci right 7.319840e-01	k: 219119	n:300000
KS ci ratio: 2.036650e-01	ci left: 1.107753e-03	ci right 1.362039e-03	k: 369	n:300000
FAM123B   300000 perm   131 sec   (2293 perm/sec)   p_kst 1.230000e-03   p_cons 7.303967e-01   p_joint 5.693333e-03

Joint ci ratio: 8.333471e-02	ci left: 6.791644e-03	ci right 7.385368e-03	k: 2196	n:310000
Cons ci ratio: 4.387093e-03	ci left: 7.187324e-01	ci right 7.218957e-01	k: 223298	n:310000
KS ci ratio: 1.993982e-01	ci left: 1.121029e-03	ci right 1.372315e-03	k: 385	n:310000
FAM123B   310000 perm   136 sec   (2277 perm/sec)   p_kst 1.241935e-03   p_cons 7.203161e-01   p_joint 7.083871e-03

Joint ci ratio: 8.091342e-02	ci left: 6.986524e-03	ci right 7.578702e-03	k: 2329	n:320000
Cons ci ratio: 4.318977e-03	ci left: 7.186662e-01	ci right 7.217799e-01	k: 230472	n:320000
KS ci ratio: 1.958772e-01	ci left: 1.127582e-03	ci right 1.375342e-03	k: 399	n:320000
FAM123B   320000 perm   142 sec   (2260 perm/sec)   p_kst 1.246875e-03   p_cons 7.202250e-01   p_joint 7.278125e-03

Joint ci ratio: 7.959153e-02	ci left: 7.006434e-03	ci right 7.590148e-03	k: 2407	n:330000
Cons ci ratio: 4.250324e-03	ci left: 7.189473e-01	ci right 7.220125e-01	k: 237759	n:330000
KS ci ratio: 1.925363e-01	ci left: 1.133775e-03	ci right 1.378149e-03	k: 413	n:330000
FAM123B   330000 perm   148 sec   (2235 perm/sec)   p_kst 1.251515e-03   p_cons 7.204818e-01   p_joint 7.293939e-03

Joint ci ratio: 8.020619e-02	ci left: 6.696552e-03	ci right 7.258959e-03	k: 2371	n:340000
Cons ci ratio: 4.188877e-03	ci left: 7.188233e-01	ci right 7.218436e-01	k: 244914	n:340000
KS ci ratio: 1.900288e-01	ci left: 1.131232e-03	ci right 1.371516e-03	k: 424	n:340000
FAM123B   340000 perm   154 sec   (2215 perm/sec)   p_kst 1.247059e-03   p_cons 7.203353e-01   p_joint 6.973529e-03

Joint ci ratio: 7.940926e-02	ci left: 6.639620e-03	ci right 7.191448e-03	k: 2419	n:350000
Cons ci ratio: 4.126914e-03	ci left: 7.190101e-01	ci right 7.219863e-01	k: 252175	n:350000
KS ci ratio: 1.871873e-01	ci left: 1.134301e-03	ci right 1.371224e-03	k: 437	n:350000
FAM123B   350000 perm   159 sec   (2196 perm/sec)   p_kst 1.248571e-03   p_cons 7.205000e-01   p_joint 6.911429e-03

Joint ci ratio: 7.823757e-02	ci left: 6.653969e-03	ci right 7.198458e-03	k: 2492	n:360000
Cons ci ratio: 4.070680e-03	ci left: 7.188835e-01	ci right 7.218185e-01	k: 259327	n:360000
KS ci ratio: 1.836560e-01	ci left: 1.147823e-03	ci right 1.382545e-03	k: 454	n:360000
FAM123B   360000 perm   165 sec   (2182 perm/sec)   p_kst 1.261111e-03   p_cons 7.203528e-01   p_joint 6.922222e-03

Joint ci ratio: 7.783734e-02	ci left: 6.543016e-03	ci right 7.075562e-03	k: 2518	n:370000
Cons ci ratio: 4.015901e-03	ci left: 7.188425e-01	ci right 7.217378e-01	k: 266508	n:370000
KS ci ratio: 1.818670e-01	ci left: 1.140012e-03	ci right 1.370615e-03	k: 463	n:370000
FAM123B   370000 perm   171 sec   (2168 perm/sec)   p_kst 1.251351e-03   p_cons 7.202919e-01   p_joint 6.805405e-03

Joint ci ratio: 7.707800e-02	ci left: 6.499856e-03	ci right 7.023497e-03	k: 2568	n:380000
Cons ci ratio: 3.962680e-03	ci left: 7.188646e-01	ci right 7.217215e-01	k: 273712	n:380000
KS ci ratio: 1.788094e-01	ci left: 1.150217e-03	ci right 1.378550e-03	k: 479	n:380000
FAM123B   380000 perm   177 sec   (2152 perm/sec)   p_kst 1.260526e-03   p_cons 7.202947e-01   p_joint 6.757895e-03

Joint ci ratio: 7.625255e-02	ci left: 6.474027e-03	ci right 6.989753e-03	k: 2624	n:390000
Cons ci ratio: 3.914134e-03	ci left: 7.186162e-01	ci right 7.214370e-01	k: 280811	n:390000
KS ci ratio: 1.775210e-01	ci left: 1.137872e-03	ci right 1.361951e-03	k: 486	n:390000
FAM123B   390000 perm   183 sec   (2136 perm/sec)   p_kst 1.246154e-03   p_cons 7.200282e-01   p_joint 6.728205e-03

Joint ci ratio: 7.593934e-02	ci left: 6.366116e-03	ci right 6.871071e-03	k: 2646	n:400000
Cons ci ratio: 3.864737e-03	ci left: 7.186508e-01	ci right 7.214360e-01	k: 288018	n:400000
KS ci ratio: 1.746740e-01	ci left: 1.147663e-03	ci right 1.369663e-03	k: 502	n:400000
FAM123B   400000 perm   189 sec   (2120 perm/sec)   p_kst 1.255000e-03   p_cons 7.200450e-01   p_joint 6.615000e-03

Joint ci ratio: 7.547343e-02	ci left: 6.289800e-03	ci right 6.785505e-03	k: 2679	n:410000
Cons ci ratio: 3.817071e-03	ci left: 7.186937e-01	ci right 7.214446e-01	k: 295229	n:410000
KS ci ratio: 1.727952e-01	ci left: 1.145333e-03	ci right 1.364252e-03	k: 513	n:410000
FAM123B   410000 perm   195 sec   (2105 perm/sec)   p_kst 1.251220e-03   p_cons 7.200707e-01   p_joint 6.534146e-03

Joint ci ratio: 7.865833e-02	ci left: 5.647265e-03	ci right 6.111972e-03	k: 2468	n:420000
Cons ci ratio: 3.770570e-03	ci left: 7.187944e-01	ci right 7.215121e-01	k: 302465	n:420000
KS ci ratio: 1.711389e-01	ci left: 1.140848e-03	ci right 1.356603e-03	k: 523	n:420000
FAM123B   420000 perm   201 sec   (2090 perm/sec)   p_kst 1.245238e-03   p_cons 7.201548e-01   p_joint 5.876190e-03

Joint ci ratio: 7.871185e-02	ci left: 5.509079e-03	ci right 5.962737e-03	k: 2465	n:430000
Cons ci ratio: 3.726910e-03	ci left: 7.187625e-01	ci right 7.214485e-01	k: 309646	n:430000
KS ci ratio: 1.688972e-01	ci left: 1.145490e-03	ci right 1.358996e-03	k: 537	n:430000
FAM123B   430000 perm   207 sec   (2076 perm/sec)   p_kst 1.248837e-03   p_cons 7.201070e-01   p_joint 5.732558e-03

Joint ci ratio: 7.791090e-02	ci left: 5.497510e-03	ci right 5.945400e-03	k: 2516	n:440000
Cons ci ratio: 3.684421e-03	ci left: 7.187663e-01	ci right 7.214217e-01	k: 316842	n:440000
KS ci ratio: 1.662896e-01	ci left: 1.156472e-03	ci right 1.368365e-03	k: 554	n:440000
FAM123B   440000 perm   214 sec   (2052 perm/sec)   p_kst 1.259091e-03   p_cons 7.200955e-01   p_joint 5.718182e-03

Joint ci ratio: 8.065192e-02	ci left: 5.011537e-03	ci right 5.434872e-03	k: 2349	n:450000
Cons ci ratio: 3.458980e-03	ci left: 7.392500e-01	ci right 7.418136e-01	k: 333240	n:450000
KS ci ratio: 1.640865e-01	ci left: 1.162729e-03	ci right 1.372666e-03	k: 569	n:450000
FAM123B   450000 perm   221 sec   (2034 perm/sec)   p_kst 1.264444e-03   p_cons 7.405333e-01   p_joint 5.220000e-03

Joint ci ratio: 8.009322e-02	ci left: 4.972884e-03	ci right 5.389908e-03	k: 2382	n:460000
Cons ci ratio: 3.420950e-03	ci left: 7.392894e-01	ci right 7.418249e-01	k: 340657	n:460000
KS ci ratio: 1.626663e-01	ci left: 1.158302e-03	ci right 1.365453e-03	k: 579	n:460000
FAM123B   460000 perm   228 sec   (2016 perm/sec)   p_kst 1.258696e-03   p_cons 7.405587e-01   p_joint 5.178261e-03

Joint ci ratio: 7.982874e-02	ci left: 4.900432e-03	ci right 5.309961e-03	k: 2398	n:470000
Cons ci ratio: 3.384672e-03	ci left: 7.392677e-01	ci right 7.417762e-01	k: 348046	n:470000
KS ci ratio: 1.615568e-01	ci left: 1.149988e-03	ci right 1.354113e-03	k: 587	n:470000
FAM123B   470000 perm   235 sec   (2002 perm/sec)   p_kst 1.248936e-03   p_cons 7.405234e-01   p_joint 5.102128e-03

Joint ci ratio: 7.915604e-02	ci left: 4.882057e-03	ci right 5.286453e-03	k: 2439	n:480000
Cons ci ratio: 3.348925e-03	ci left: 7.393158e-01	ci right 7.417979e-01	k: 355468	n:480000
KS ci ratio: 1.607398e-01	ci left: 1.138025e-03	ci right 1.338907e-03	k: 593	n:480000
FAM123B   480000 perm   242 sec   (1987 perm/sec)   p_kst 1.235417e-03   p_cons 7.405583e-01   p_joint 5.081250e-03

Joint ci ratio: 7.927453e-02	ci left: 4.768409e-03	ci right 5.164010e-03	k: 2432	n:490000
Cons ci ratio: 3.314446e-03	ci left: 7.393438e-01	ci right 7.418003e-01	k: 362881	n:490000
KS ci ratio: 1.594040e-01	ci left: 1.134390e-03	ci right 1.332807e-03	k: 603	n:490000
FAM123B   490000 perm   248 sec   (1972 perm/sec)   p_kst 1.230612e-03   p_cons 7.405735e-01   p_joint 4.963265e-03

Joint ci ratio: 7.632400e-02	ci left: 5.047638e-03	ci right 5.450127e-03	k: 2623	n:500000
Cons ci ratio: 3.279661e-03	ci left: 7.395289e-01	ci right 7.419603e-01	k: 370373	n:500000
KS ci ratio: 1.578438e-01	ci left: 1.134750e-03	ci right 1.331103e-03	k: 615	n:500000
FAM123B   500000 perm   255 sec   (1961 perm/sec)   p_kst 1.230000e-03   p_cons 7.407460e-01   p_joint 5.246000e-03

Joint ci ratio: 7.603722e-02	ci left: 4.987128e-03	ci right 5.383231e-03	k: 2643	n:510000
Cons ci ratio: 3.247737e-03	ci left: 7.394949e-01	ci right 7.419024e-01	k: 377757	n:510000
KS ci ratio: 1.569554e-01	ci left: 1.125684e-03	ci right 1.319269e-03	k: 622	n:510000
FAM123B   510000 perm   262 sec   (1949 perm/sec)   p_kst 1.219608e-03   p_cons 7.407000e-01   p_joint 5.182353e-03

Joint ci ratio: 7.562529e-02	ci left: 4.945929e-03	ci right 5.336539e-03	k: 2672	n:520000
Cons ci ratio: 3.215729e-03	ci left: 7.395817e-01	ci right 7.419657e-01	k: 385203	n:520000
KS ci ratio: 1.557110e-01	ci left: 1.122515e-03	ci right 1.313881e-03	k: 632	n:520000
FAM123B   520000 perm   268 sec   (1938 perm/sec)   p_kst 1.215385e-03   p_cons 7.407750e-01   p_joint 5.138462e-03

Joint ci ratio: 7.105716e-02	ci left: 5.506498e-03	ci right 5.914028e-03	k: 3025	n:530000
Cons ci ratio: 3.184712e-03	ci left: 7.396577e-01	ci right 7.420189e-01	k: 392645	n:530000
KS ci ratio: 1.490264e-01	ci left: 1.206603e-03	ci right 1.402687e-03	k: 690	n:530000
FAM123B   530000 perm   275 sec   (1926 perm/sec)   p_kst 1.301887e-03   p_cons 7.408396e-01   p_joint 5.707547e-03

Joint ci ratio: 7.045472e-02	ci left: 5.499118e-03	ci right 5.902510e-03	k: 3077	n:540000
Cons ci ratio: 3.155168e-03	ci left: 7.396587e-01	ci right 7.419980e-01	k: 400048	n:540000
KS ci ratio: 1.475392e-01	ci left: 1.209222e-03	ci right 1.403599e-03	k: 704	n:540000
FAM123B   540000 perm   282 sec   (1913 perm/sec)   p_kst 1.303704e-03   p_cons 7.408296e-01   p_joint 5.698148e-03

Joint ci ratio: 7.156570e-02	ci left: 5.231234e-03	ci right 5.621277e-03	k: 2983	n:550000
Cons ci ratio: 3.125603e-03	ci left: 7.397617e-01	ci right 7.420793e-01	k: 407507	n:550000
KS ci ratio: 1.461974e-01	ci left: 1.210004e-03	ci right 1.402583e-03	k: 717	n:550000
FAM123B   550000 perm   289 sec   (1900 perm/sec)   p_kst 1.303636e-03   p_cons 7.409218e-01   p_joint 5.423636e-03

Joint ci ratio: 7.222919e-02	ci left: 5.043106e-03	ci right 5.422754e-03	k: 2929	n:560000
Cons ci ratio: 3.096780e-03	ci left: 7.398701e-01	ci right 7.421667e-01	k: 414971	n:560000
KS ci ratio: 1.452902e-01	ci left: 1.203882e-03	ci right 1.394194e-03	k: 726	n:560000
FAM123B   560000 perm   297 sec   (1887 perm/sec)   p_kst 1.296429e-03   p_cons 7.410196e-01   p_joint 5.230357e-03

Joint ci ratio: 7.210894e-02	ci left: 4.971851e-03	ci right 5.345486e-03	k: 2939	n:570000
Cons ci ratio: 3.069568e-03	ci left: 7.398712e-01	ci right 7.421474e-01	k: 422376	n:570000
KS ci ratio: 1.441059e-01	ci left: 1.203052e-03	ci right 1.391549e-03	k: 738	n:570000
FAM123B   570000 perm   307 sec   (1859 perm/sec)   p_kst 1.294737e-03   p_cons 7.410105e-01   p_joint 5.156140e-03

Joint ci ratio: 7.156375e-02	ci left: 4.962321e-03	ci right 5.332303e-03	k: 2984	n:580000
Cons ci ratio: 3.042911e-03	ci left: 7.398912e-01	ci right 7.421478e-01	k: 429792	n:580000
KS ci ratio: 1.427599e-01	ci left: 1.205581e-03	ci right 1.392560e-03	k: 752	n:580000
FAM123B   580000 perm   315 sec   (1840 perm/sec)   p_kst 1.296552e-03   p_cons 7.410207e-01   p_joint 5.144828e-03

Joint ci ratio: 7.108972e-02	ci left: 4.944800e-03	ci right 5.310933e-03	k: 3024	n:590000
Cons ci ratio: 3.016097e-03	ci left: 7.400176e-01	ci right 7.422546e-01	k: 437271	n:590000
KS ci ratio: 1.411747e-01	ci left: 1.212938e-03	ci right 1.398794e-03	k: 769	n:590000
FAM123B   590000 perm   323 sec   (1828 perm/sec)   p_kst 1.303390e-03   p_cons 7.411373e-01   p_joint 5.125424e-03

Joint ci ratio: 7.104558e-02	ci left: 4.868928e-03	ci right 5.229210e-03	k: 3028	n:600000
Cons ci ratio: 2.990433e-03	ci left: 7.400814e-01	ci right 7.422996e-01	k: 444715	n:600000
KS ci ratio: 1.397300e-01	ci left: 1.218452e-03	ci right 1.403083e-03	k: 785	n:600000
FAM123B   600000 perm   330 sec   (1817 perm/sec)   p_kst 1.308333e-03   p_cons 7.411917e-01   p_joint 5.046667e-03

Joint ci ratio: 7.087239e-02	ci left: 4.813259e-03	ci right 5.168517e-03	k: 3043	n:610000
Cons ci ratio: 2.966288e-03	ci left: 7.400300e-01	ci right 7.422300e-01	k: 452090	n:610000
KS ci ratio: 1.384153e-01	ci left: 1.222213e-03	ci right 1.405527e-03	k: 800	n:610000
FAM123B   610000 perm   338 sec   (1805 perm/sec)   p_kst 1.311475e-03   p_cons 7.411311e-01   p_joint 4.988525e-03

Joint ci ratio: 7.028598e-02	ci left: 4.816432e-03	ci right 5.168863e-03	k: 3094	n:620000
Cons ci ratio: 2.942248e-03	ci left: 7.400417e-01	ci right 7.422238e-01	k: 459503	n:620000
KS ci ratio: 1.373056e-01	ci left: 1.222744e-03	ci right 1.404548e-03	k: 813	n:620000
FAM123B   620000 perm   346 sec   (1791 perm/sec)   p_kst 1.311290e-03   p_cons 7.411339e-01   p_joint 4.990323e-03

Joint ci ratio: 6.998267e-02	ci left: 4.782083e-03	ci right 5.130429e-03	k: 3121	n:630000
Cons ci ratio: 2.918458e-03	ci left: 7.400959e-01	ci right 7.422606e-01	k: 466943	n:630000
KS ci ratio: 1.362222e-01	ci left: 1.223264e-03	ci right 1.403594e-03	k: 826	n:630000
FAM123B   630000 perm   354 sec   (1778 perm/sec)   p_kst 1.311111e-03   p_cons 7.411794e-01   p_joint 4.953968e-03

Joint ci ratio: 6.937396e-02	ci left: 4.791804e-03	ci right 5.137700e-03	k: 3176	n:640000
Cons ci ratio: 2.894233e-03	ci left: 7.402816e-01	ci right 7.424287e-01	k: 474468	n:640000
KS ci ratio: 1.353254e-01	ci left: 1.220754e-03	ci right 1.399434e-03	k: 837	n:640000
FAM123B   640000 perm   362 sec   (1767 perm/sec)   p_kst 1.307812e-03   p_cons 7.413563e-01   p_joint 4.962500e-03

Joint ci ratio: 6.931089e-02	ci left: 4.727149e-03	ci right 5.068055e-03	k: 3182	n:650000
Cons ci ratio: 2.872327e-03	ci left: 7.402305e-01	ci right 7.423612e-01	k: 481843	n:650000
KS ci ratio: 1.344461e-01	ci left: 1.218325e-03	ci right 1.395398e-03	k: 848	n:650000
FAM123B   650000 perm   370 sec   (1757 perm/sec)   p_kst 1.304615e-03   p_cons 7.412969e-01   p_joint 4.895385e-03

Joint ci ratio: 6.883700e-02	ci left: 4.721041e-03	ci right 5.059085e-03	k: 3226	n:660000
Cons ci ratio: 2.849707e-03	ci left: 7.403433e-01	ci right 7.424576e-01	k: 489325	n:660000
KS ci ratio: 1.334284e-01	ci left: 1.218903e-03	ci right 1.394612e-03	k: 861	n:660000
FAM123B   660000 perm   379 sec   (1741 perm/sec)   p_kst 1.304545e-03   p_cons 7.414015e-01   p_joint 4.887879e-03

Joint ci ratio: 6.792549e-02	ci left: 4.778213e-03	ci right 5.115642e-03	k: 3313	n:670000
Cons ci ratio: 2.828548e-03	ci left: 7.403258e-01	ci right 7.424243e-01	k: 496722	n:670000
KS ci ratio: 1.325094e-01	ci left: 1.218025e-03	ci right 1.392303e-03	k: 873	n:670000
FAM123B   670000 perm   388 sec   (1729 perm/sec)   p_kst 1.302985e-03   p_cons 7.413761e-01   p_joint 4.944776e-03

Joint ci ratio: 6.743892e-02	ci left: 4.777338e-03	ci right 5.112195e-03	k: 3361	n:680000
Cons ci ratio: 2.807928e-03	ci left: 7.402986e-01	ci right 7.423817e-01	k: 504112	n:680000
KS ci ratio: 1.314606e-01	ci left: 1.220021e-03	ci right 1.393095e-03	k: 887	n:680000
FAM123B   680000 perm   396 sec   (1716 perm/sec)   p_kst 1.304412e-03   p_cons 7.413412e-01   p_joint 4.942647e-03

Joint ci ratio: 6.695280e-02	ci left: 4.777923e-03	ci right 5.110313e-03	k: 3410	n:690000
Cons ci ratio: 2.787922e-03	ci left: 7.402490e-01	ci right 7.423171e-01	k: 511486	n:690000
KS ci ratio: 1.305087e-01	ci left: 1.220563e-03	ci right 1.392363e-03	k: 900	n:690000
FAM123B   690000 perm   406 sec   (1701 perm/sec)   p_kst 1.304348e-03   p_cons 7.412841e-01   p_joint 4.942029e-03

Joint ci ratio: 6.526537e-02	ci left: 4.959764e-03	ci right 5.295780e-03	k: 3588	n:700000
Cons ci ratio: 2.767492e-03	ci left: 7.403182e-01	ci right 7.423712e-01	k: 518942	n:700000
KS ci ratio: 1.295773e-01	ci left: 1.221094e-03	ci right 1.391648e-03	k: 913	n:700000
FAM123B   700000 perm   416 sec   (1684 perm/sec)   p_kst 1.304286e-03   p_cons 7.413457e-01   p_joint 5.125714e-03

Joint ci ratio: 6.479761e-02	ci left: 4.961957e-03	ci right 5.295621e-03	k: 3640	n:710000
Cons ci ratio: 2.747161e-03	ci left: 7.404334e-01	ci right 7.424717e-01	k: 526432	n:710000
KS ci ratio: 1.288047e-01	ci left: 1.218887e-03	ci right 1.388040e-03	k: 924	n:710000
FAM123B   710000 perm   424 sec   (1673 perm/sec)   p_kst 1.301408e-03   p_cons 7.414535e-01   p_joint 5.126761e-03

Joint ci ratio: 6.479993e-02	ci left: 4.893035e-03	ci right 5.222077e-03	k: 3640	n:720000
Cons ci ratio: 2.727745e-03	ci left: 7.404787e-01	ci right 7.425027e-01	k: 533874	n:720000
KS ci ratio: 1.281830e-01	ci left: 1.214056e-03	ci right 1.381664e-03	k: 933	n:720000
FAM123B   720000 perm   433 sec   (1661 perm/sec)   p_kst 1.295833e-03   p_cons 7.414917e-01   p_joint 5.055556e-03

Joint ci ratio: 6.447377e-02	ci left: 4.875872e-03	ci right 5.202047e-03	k: 3677	n:730000
Cons ci ratio: 2.708232e-03	ci left: 7.405942e-01	ci right 7.426039e-01	k: 541368	n:730000
KS ci ratio: 1.272329e-01	ci left: 1.215991e-03	ci right 1.382527e-03	k: 947	n:730000
FAM123B   730000 perm   443 sec   (1649 perm/sec)   p_kst 1.297260e-03   p_cons 7.416000e-01   p_joint 5.036986e-03

Joint ci ratio: 6.483123e-02	ci left: 4.756792e-03	ci right 5.076832e-03	k: 3637	n:740000
Cons ci ratio: 2.689776e-03	ci left: 7.406145e-01	ci right 7.426106e-01	k: 548794	n:740000
KS ci ratio: 1.266336e-01	ci left: 1.211335e-03	ci right 1.376393e-03	k: 956	n:740000
FAM123B   740000 perm   452 sec   (1638 perm/sec)   p_kst 1.291892e-03   p_cons 7.416135e-01   p_joint 4.914865e-03

Joint ci ratio: 6.432890e-02	ci left: 4.768142e-03	ci right 5.086367e-03	k: 3694	n:750000
Cons ci ratio: 2.671293e-03	ci left: 7.406918e-01	ci right 7.426743e-01	k: 556263	n:750000
KS ci ratio: 1.253944e-01	ci left: 1.219719e-03	ci right 1.384172e-03	k: 975	n:750000
FAM123B   750000 perm   461 sec   (1627 perm/sec)   p_kst 1.300000e-03   p_cons 7.416840e-01   p_joint 4.925333e-03

Joint ci ratio: 6.437478e-02	ci left: 4.698925e-03	ci right 5.012762e-03	k: 3689	n:760000
Cons ci ratio: 2.653258e-03	ci left: 7.407565e-01	ci right 7.427258e-01	k: 563724	n:760000
KS ci ratio: 1.245675e-01	ci left: 1.220240e-03	ci right 1.383599e-03	k: 988	n:760000
FAM123B   760000 perm   470 sec   (1617 perm/sec)   p_kst 1.300000e-03   p_cons 7.417421e-01   p_joint 4.853947e-03

Joint ci ratio: 6.445585e-02	ci left: 4.626394e-03	ci right 4.935791e-03	k: 3680	n:770000
Cons ci ratio: 2.636432e-03	ci left: 7.406961e-01	ci right 7.426527e-01	k: 571090	n:770000
KS ci ratio: 1.236333e-01	ci left: 1.223269e-03	ci right 1.385715e-03	k: 1003	n:770000
FAM123B   770000 perm   480 sec   (1605 perm/sec)   p_kst 1.302597e-03   p_cons 7.416753e-01   p_joint 4.779221e-03

Joint ci ratio: 6.397074e-02	ci left: 4.637724e-03	ci right 4.945458e-03	k: 3736	n:780000
Cons ci ratio: 2.620185e-03	ci left: 7.405987e-01	ci right 7.425430e-01	k: 578426	n:780000
KS ci ratio: 1.230224e-01	ci left: 1.220011e-03	ci right 1.381165e-03	k: 1013	n:780000
FAM123B   780000 perm   489 sec   (1597 perm/sec)   p_kst 1.298718e-03   p_cons 7.415718e-01   p_joint 4.789744e-03

Joint ci ratio: 6.348802e-02	ci left: 4.650022e-03	ci right 4.956158e-03	k: 3793	n:790000
Cons ci ratio: 2.603572e-03	ci left: 7.406015e-01	ci right 7.425334e-01	k: 585839	n:790000
KS ci ratio: 1.220630e-01	ci left: 1.224200e-03	ci right 1.384556e-03	k: 1029	n:790000
FAM123B   790000 perm   497 sec   (1588 perm/sec)   p_kst 1.302532e-03   p_cons 7.415684e-01   p_joint 4.801266e-03

Joint ci ratio: 6.425156e-02	ci left: 4.482411e-03	ci right 4.781193e-03	k: 3704	n:800000
Cons ci ratio: 2.587499e-03	ci left: 7.405704e-01	ci right 7.424903e-01	k: 593225	n:800000
KS ci ratio: 1.210676e-01	ci left: 1.229501e-03	ci right 1.389145e-03	k: 1046	n:800000
FAM123B   800000 perm   507 sec   (1579 perm/sec)   p_kst 1.307500e-03   p_cons 7.415312e-01   p_joint 4.630000e-03

Joint ci ratio: 6.424470e-02	ci left: 4.428283e-03	ci right 4.723425e-03	k: 3705	n:810000
Cons ci ratio: 2.572027e-03	ci left: 7.404944e-01	ci right 7.424026e-01	k: 600574	n:810000
KS ci ratio: 1.207802e-01	ci left: 1.220308e-03	ci right 1.378355e-03	k: 1051	n:810000
FAM123B   810000 perm   516 sec   (1570 perm/sec)   p_kst 1.297531e-03   p_cons 7.414494e-01   p_joint 4.574074e-03

Joint ci ratio: 6.389243e-02	ci left: 4.423479e-03	ci right 4.716623e-03	k: 3746	n:820000
Cons ci ratio: 2.556373e-03	ci left: 7.404887e-01	ci right 7.423852e-01	k: 607979	n:820000
KS ci ratio: 1.198157e-01	ci left: 1.225534e-03	ci right 1.382900e-03	k: 1068	n:820000
FAM123B   820000 perm   526 sec   (1559 perm/sec)   p_kst 1.302439e-03   p_cons 7.414378e-01   p_joint 4.568293e-03

Joint ci ratio: 6.410074e-02	ci left: 4.341725e-03	ci right 4.630425e-03	k: 3722	n:830000
Cons ci ratio: 2.540658e-03	ci left: 7.405350e-01	ci right 7.424200e-01	k: 615427	n:830000
KS ci ratio: 1.193148e-01	ci left: 1.221288e-03	ci right 1.377407e-03	k: 1077	n:830000
FAM123B   830000 perm   536 sec   (1550 perm/sec)   p_kst 1.297590e-03   p_cons 7.414783e-01   p_joint 4.484337e-03

Joint ci ratio: 6.377636e-02	ci left: 4.334552e-03	ci right 4.621262e-03	k: 3760	n:840000
Cons ci ratio: 2.525598e-03	ci left: 7.405242e-01	ci right 7.423980e-01	k: 622828	n:840000
KS ci ratio: 1.185474e-01	ci left: 1.222920e-03	ci right 1.378171e-03	k: 1091	n:840000
FAM123B   840000 perm   545 sec   (1540 perm/sec)   p_kst 1.298810e-03   p_cons 7.414619e-01   p_joint 4.476190e-03

Joint ci ratio: 6.334806e-02	ci left: 4.342604e-03	ci right 4.627848e-03	k: 3811	n:850000
Cons ci ratio: 2.510648e-03	ci left: 7.405372e-01	ci right 7.423999e-01	k: 630249	n:850000
KS ci ratio: 1.177414e-01	ci left: 1.225658e-03	ci right 1.380126e-03	k: 1106	n:850000
FAM123B   850000 perm   555 sec   (1532 perm/sec)   p_kst 1.301176e-03   p_cons 7.414694e-01   p_joint 4.483529e-03

Joint ci ratio: 6.582363e-02	ci left: 3.971758e-03	ci right 4.243226e-03	k: 3531	n:860000
Cons ci ratio: 2.495590e-03	ci left: 7.406071e-01	ci right 7.424588e-01	k: 637719	n:860000
KS ci ratio: 1.171608e-01	ci left: 1.223821e-03	ci right 1.377244e-03	k: 1117	n:860000
FAM123B   860000 perm   564 sec   (1524 perm/sec)   p_kst 1.298837e-03   p_cons 7.415337e-01   p_joint 4.105814e-03

Joint ci ratio: 6.572251e-02	ci left: 3.938540e-03	ci right 4.207308e-03	k: 3542	n:870000
Cons ci ratio: 2.480799e-03	ci left: 7.406753e-01	ci right 7.425162e-01	k: 645189	n:870000
KS ci ratio: 1.165371e-01	ci left: 1.223144e-03	ci right 1.375610e-03	k: 1129	n:870000
FAM123B   870000 perm   574 sec   (1515 perm/sec)   p_kst 1.297701e-03   p_cons 7.415966e-01   p_joint 4.071264e-03

Joint ci ratio: 6.639533e-02	ci left: 3.814426e-03	ci right 4.077492e-03	k: 3471	n:880000
Cons ci ratio: 2.466027e-03	ci left: 7.407796e-01	ci right 7.426097e-01	k: 652692	n:880000
KS ci ratio: 1.158725e-01	ci left: 1.223588e-03	ci right 1.375180e-03	k: 1142	n:880000
FAM123B   880000 perm   584 sec   (1507 perm/sec)   p_kst 1.297727e-03   p_cons 7.416955e-01   p_joint 3.944318e-03

Joint ci ratio: 6.588441e-02	ci left: 3.831239e-03	ci right 4.093354e-03	k: 3525	n:890000
Cons ci ratio: 2.451911e-03	ci left: 7.408197e-01	ci right 7.426394e-01	k: 660140	n:890000
KS ci ratio: 1.149705e-01	ci left: 1.229481e-03	ci right 1.380536e-03	k: 1160	n:890000
FAM123B   890000 perm   595 sec   (1497 perm/sec)   p_kst 1.303371e-03   p_cons 7.417303e-01   p_joint 3.960674e-03

Joint ci ratio: 6.558774e-02	ci left: 3.823641e-03	ci right 4.084012e-03	k: 3557	n:900000
Cons ci ratio: 2.438324e-03	ci left: 7.408133e-01	ci right 7.426229e-01	k: 667547	n:900000
KS ci ratio: 1.142834e-01	ci left: 1.230930e-03	ci right 1.381198e-03	k: 1174	n:900000
FAM123B   900000 perm   604 sec   (1489 perm/sec)   p_kst 1.304444e-03   p_cons 7.417189e-01   p_joint 3.952222e-03

Joint ci ratio: 6.523123e-02	ci left: 3.823779e-03	ci right 4.082691e-03	k: 3596	n:910000
Cons ci ratio: 2.425329e-03	ci left: 7.407488e-01	ci right 7.425486e-01	k: 674901	n:910000
KS ci ratio: 1.136085e-01	ci left: 1.232349e-03	ci right 1.381843e-03	k: 1188	n:910000
FAM123B   910000 perm   615 sec   (1481 perm/sec)   p_kst 1.305495e-03   p_cons 7.416495e-01   p_joint 3.951648e-03

Joint ci ratio: 6.486256e-02	ci left: 3.826056e-03	ci right 4.083604e-03	k: 3637	n:920000
Cons ci ratio: 2.411677e-03	ci left: 7.408228e-01	ci right 7.426126e-01	k: 682381	n:920000
KS ci ratio: 1.128985e-01	ci left: 1.234797e-03	ci right 1.383589e-03	k: 1203	n:920000
FAM123B   920000 perm   627 sec   (1467 perm/sec)   p_kst 1.307609e-03   p_cons 7.417185e-01   p_joint 3.953261e-03

Joint ci ratio: 6.449128e-02	ci left: 3.829347e-03	ci right 4.085585e-03	k: 3679	n:930000
Cons ci ratio: 2.398421e-03	ci left: 7.408683e-01	ci right 7.426484e-01	k: 689836	n:930000
KS ci ratio: 1.120178e-01	ci left: 1.241375e-03	ci right 1.389716e-03	k: 1222	n:930000
FAM123B   930000 perm   638 sec   (1458 perm/sec)   p_kst 1.313978e-03   p_cons 7.417591e-01   p_joint 3.955914e-03

Joint ci ratio: 6.432614e-02	ci left: 3.808495e-03	ci right 4.062662e-03	k: 3698	n:940000
Cons ci ratio: 2.385634e-03	ci left: 7.408725e-01	ci right 7.426431e-01	k: 697253	n:940000
KS ci ratio: 1.116081e-01	ci left: 1.237475e-03	ci right 1.384774e-03	k: 1231	n:940000
FAM123B   940000 perm   649 sec   (1448 perm/sec)   p_kst 1.309574e-03   p_cons 7.417585e-01   p_joint 3.934043e-03

Joint ci ratio: 6.483980e-02	ci left: 3.708333e-03	ci right 3.957865e-03	k: 3640	n:950000
Cons ci ratio: 2.373466e-03	ci left: 7.408091e-01	ci right 7.425705e-01	k: 704606	n:950000
KS ci ratio: 1.113828e-01	ci left: 1.229565e-03	ci right 1.375608e-03	k: 1236	n:950000
FAM123B   950000 perm   660 sec   (1438 perm/sec)   p_kst 1.301053e-03   p_cons 7.416905e-01   p_joint 3.831579e-03

Joint ci ratio: 6.462763e-02	ci left: 3.694299e-03	ci right 3.942043e-03	k: 3664	n:960000
Cons ci ratio: 2.361405e-03	ci left: 7.407596e-01	ci right 7.425119e-01	k: 711971	n:960000
KS ci ratio: 1.107577e-01	ci left: 1.230936e-03	ci right 1.376267e-03	k: 1250	n:960000
FAM123B   960000 perm   671 sec   (1431 perm/sec)   p_kst 1.302083e-03   p_cons 7.416365e-01   p_joint 3.816667e-03

Joint ci ratio: 6.431262e-02	ci left: 3.692729e-03	ci right 3.939115e-03	k: 3700	n:970000
Cons ci ratio: 2.348925e-03	ci left: 7.408091e-01	ci right 7.425523e-01	k: 719431	n:970000
KS ci ratio: 1.102741e-01	ci left: 1.229272e-03	ci right 1.373732e-03	k: 1261	n:970000
FAM123B   970000 perm   681 sec   (1424 perm/sec)   p_kst 1.300000e-03   p_cons 7.416814e-01   p_joint 3.814433e-03

Joint ci ratio: 6.522228e-02	ci left: 3.552643e-03	ci right 3.793162e-03	k: 3598	n:980000
Cons ci ratio: 2.336579e-03	ci left: 7.408679e-01	ci right 7.426021e-01	k: 726901	n:980000
KS ci ratio: 1.096244e-01	ci left: 1.231614e-03	ci right 1.375441e-03	k: 1276	n:980000
FAM123B   980000 perm   692 sec   (1417 perm/sec)   p_kst 1.302041e-03   p_cons 7.417357e-01   p_joint 3.671429e-03

Joint ci ratio: 6.496134e-02	ci left: 3.545574e-03	ci right 3.784617e-03	k: 3627	n:990000
Cons ci ratio: 2.324646e-03	ci left: 7.408892e-01	ci right 7.426145e-01	k: 734335	n:990000
KS ci ratio: 1.088596e-01	ci left: 1.236859e-03	ci right 1.380226e-03	k: 1294	n:990000
FAM123B   990000 perm   702 sec   (1409 perm/sec)   p_kst 1.307071e-03   p_cons 7.417525e-01   p_joint 3.663636e-03

Joint ci ratio: 6.457955e-02	ci left: 3.552422e-03	ci right 3.790467e-03	k: 3670	n:1000000
Cons ci ratio: 2.312991e-03	ci left: 7.408940e-01	ci right 7.426106e-01	k: 741753	n:1000000
KS ci ratio: 1.079461e-01	ci left: 1.245894e-03	ci right 1.389020e-03	k: 1316	n:1000000
FAM123B   1000000 perm   713 sec   (1402 perm/sec)   p_kst 1.316000e-03   p_cons 7.417530e-01   p_joint 3.670000e-03

Joint ci ratio: 6.424784e-02	ci left: 3.554267e-03	ci right 3.791167e-03	k: 3708	n:1010000
Cons ci ratio: 2.301700e-03	ci left: 7.408670e-01	ci right 7.425752e-01	k: 749139	n:1010000
KS ci ratio: 1.072558e-01	ci left: 1.249937e-03	ci right 1.392551e-03	k: 1333	n:1010000
FAM123B   1010000 perm   724 sec   (1394 perm/sec)   p_kst 1.319802e-03   p_cons 7.417218e-01   p_joint 3.671287e-03

Joint ci ratio: 6.398120e-02	ci left: 3.549326e-03	ci right 3.784879e-03	k: 3739	n:1020000
Cons ci ratio: 2.290677e-03	ci left: 7.408229e-01	ci right 7.425228e-01	k: 756507	n:1020000
KS ci ratio: 1.068961e-01	ci left: 1.246270e-03	ci right 1.387959e-03	k: 1342	n:1020000
FAM123B   1020000 perm   735 sec   (1387 perm/sec)   p_kst 1.315686e-03   p_cons 7.416735e-01   p_joint 3.665686e-03

Joint ci ratio: 6.365012e-02	ci left: 3.552127e-03	ci right 3.786600e-03	k: 3778	n:1030000
Cons ci ratio: 2.279390e-03	ci left: 7.408506e-01	ci right 7.425422e-01	k: 763948	n:1030000
KS ci ratio: 1.063432e-01	ci left: 1.247400e-03	ci right 1.388438e-03	k: 1356	n:1030000
FAM123B   1030000 perm   746 sec   (1380 perm/sec)   p_kst 1.316505e-03   p_cons 7.416971e-01   p_joint 3.667961e-03

Joint ci ratio: 6.376991e-02	ci left: 3.504722e-03	ci right 3.736518e-03	k: 3764	n:1040000
Cons ci ratio: 2.268223e-03	ci left: 7.408855e-01	ci right 7.425689e-01	k: 771397	n:1040000
KS ci ratio: 1.056831e-01	ci left: 1.251319e-03	ci right 1.391867e-03	k: 1373	n:1040000
FAM123B   1040000 perm   759 sec   (1371 perm/sec)   p_kst 1.320192e-03   p_cons 7.417279e-01   p_joint 3.619231e-03

Joint ci ratio: 6.340029e-02	ci left: 3.512583e-03	ci right 3.743502e-03	k: 3808	n:1050000
Cons ci ratio: 2.257510e-03	ci left: 7.408702e-01	ci right 7.425456e-01	k: 778794	n:1050000
KS ci ratio: 1.051108e-01	ci left: 1.253311e-03	ci right 1.393273e-03	k: 1388	n:1050000
FAM123B   1050000 perm   769 sec   (1365 perm/sec)   p_kst 1.321905e-03   p_cons 7.417086e-01   p_joint 3.626667e-03

Joint ci ratio: 6.297143e-02	ci left: 3.527727e-03	ci right 3.758017e-03	k: 3860	n:1060000
Cons ci ratio: 2.246593e-03	ci left: 7.409157e-01	ci right 7.425830e-01	k: 786255	n:1060000
KS ci ratio: 1.044732e-01	ci left: 1.257104e-03	ci right 1.396587e-03	k: 1405	n:1060000
FAM123B   1060000 perm   781 sec   (1358 perm/sec)   p_kst 1.325472e-03   p_cons 7.417500e-01   p_joint 3.641509e-03

Joint ci ratio: 6.255116e-02	ci left: 3.542594e-03	ci right 3.772255e-03	k: 3912	n:1070000
Cons ci ratio: 2.236106e-03	ci left: 7.409135e-01	ci right 7.425730e-01	k: 793666	n:1070000
KS ci ratio: 1.039203e-01	ci left: 1.259009e-03	ci right 1.397918e-03	k: 1420	n:1070000
FAM123B   1070000 perm   792 sec   (1350 perm/sec)   p_kst 1.327103e-03   p_cons 7.417439e-01   p_joint 3.656075e-03

Joint ci ratio: 6.220220e-02	ci left: 3.549898e-03	ci right 3.778702e-03	k: 3956	n:1080000
Cons ci ratio: 2.225985e-03	ci left: 7.408734e-01	ci right 7.425253e-01	k: 801036	n:1080000
KS ci ratio: 1.032321e-01	ci left: 1.264489e-03	ci right 1.403023e-03	k: 1439	n:1080000
FAM123B   1080000 perm   804 sec   (1344 perm/sec)   p_kst 1.332407e-03   p_cons 7.417000e-01   p_joint 3.662963e-03

Joint ci ratio: 6.191341e-02	ci left: 3.550749e-03	ci right 3.778507e-03	k: 3993	n:1090000
Cons ci ratio: 2.215782e-03	ci left: 7.408717e-01	ci right 7.425160e-01	k: 808447	n:1090000
KS ci ratio: 1.028402e-01	ci left: 1.262720e-03	ci right 1.400503e-03	k: 1450	n:1090000
FAM123B   1090000 perm   816 sec   (1336 perm/sec)   p_kst 1.330275e-03   p_cons 7.416945e-01   p_joint 3.663303e-03

Joint ci ratio: 6.162092e-02	ci left: 3.552481e-03	ci right 3.779236e-03	k: 4031	n:1100000
Cons ci ratio: 2.205676e-03	ci left: 7.408773e-01	ci right 7.425141e-01	k: 815866	n:1100000
KS ci ratio: 1.024176e-01	ci left: 1.261869e-03	ci right 1.398960e-03	k: 1462	n:1100000
FAM123B   1100000 perm   828 sec   (1328 perm/sec)   p_kst 1.329091e-03   p_cons 7.416964e-01   p_joint 3.664545e-03

Joint ci ratio: 6.140072e-02	ci left: 3.546201e-03	ci right 3.771717e-03	k: 4060	n:1110000
Cons ci ratio: 2.196100e-03	ci left: 7.408143e-01	ci right 7.424439e-01	k: 823209	n:1110000
KS ci ratio: 1.019310e-01	ci left: 1.262791e-03	ci right 1.399291e-03	k: 1476	n:1110000
FAM123B   1110000 perm   840 sec   (1322 perm/sec)   p_kst 1.329730e-03   p_cons 7.416297e-01   p_joint 3.657658e-03

Joint ci ratio: 6.111541e-02	ci left: 3.547947e-03	ci right 3.772489e-03	k: 4098	n:1120000
Cons ci ratio: 2.186031e-03	ci left: 7.408606e-01	ci right 7.424828e-01	k: 830673	n:1120000
KS ci ratio: 1.014173e-01	ci left: 1.264569e-03	ci right 1.400531e-03	k: 1491	n:1120000
FAM123B   1120000 perm   851 sec   (1316 perm/sec)   p_kst 1.331250e-03   p_cons 7.416723e-01   p_joint 3.658929e-03

Joint ci ratio: 6.082666e-02	ci left: 3.550537e-03	ci right 3.774143e-03	k: 4137	n:1130000
Cons ci ratio: 2.176235e-03	ci left: 7.408822e-01	ci right 7.424971e-01	k: 838110	n:1130000
KS ci ratio: 1.011467e-01	ci left: 1.260278e-03	ci right 1.395396e-03	k: 1499	n:1130000
FAM123B   1130000 perm   863 sec   (1309 perm/sec)   p_kst 1.326549e-03   p_cons 7.416903e-01   p_joint 3.661062e-03

Joint ci ratio: 6.054924e-02	ci left: 3.552219e-03	ci right 3.774876e-03	k: 4175	n:1140000
Cons ci ratio: 2.166818e-03	ci left: 7.408595e-01	ci right 7.424674e-01	k: 845497	n:1140000
KS ci ratio: 1.006447e-01	ci left: 1.262049e-03	ci right 1.396645e-03	k: 1514	n:1140000
FAM123B   1140000 perm   875 sec   (1303 perm/sec)   p_kst 1.328070e-03   p_cons 7.416640e-01   p_joint 3.662281e-03

Joint ci ratio: 6.033309e-02	ci left: 3.547023e-03	ci right 3.768532e-03	k: 4205	n:1150000
Cons ci ratio: 2.157482e-03	ci left: 7.408441e-01	ci right 7.424451e-01	k: 852892	n:1150000
KS ci ratio: 1.002485e-01	ci left: 1.261247e-03	ci right 1.395197e-03	k: 1526	n:1150000
FAM123B   1150000 perm   888 sec   (1296 perm/sec)   p_kst 1.326957e-03   p_cons 7.416452e-01   p_joint 3.656522e-03

Joint ci ratio: 6.008366e-02	ci left: 3.546163e-03	ci right 3.766671e-03	k: 4240	n:1160000
Cons ci ratio: 2.148218e-03	ci left: 7.408377e-01	ci right 7.424318e-01	k: 860297	n:1160000
KS ci ratio: 9.982448e-02	ci left: 1.261301e-03	ci right 1.394657e-03	k: 1539	n:1160000
FAM123B   1160000 perm   899 sec   (1290 perm/sec)   p_kst 1.326724e-03   p_cons 7.416353e-01   p_joint 3.655172e-03

Outputting figure to mutsig2_images.part000000000060/FAM123B.27_3412_1160000_0.0013267_0.74164_0.0036552.png
                gene_name: FAM123B
               theta_stop: 0.100 
                    nperm: 1160000 
                     p_ks: 0.0013 
        ci_ks_bounds_left: 0.0013 
       ci_ks_bounds_right: 0.0014 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.0037 
     ci_joint_bounds_left: 0.0035 
    ci_joint_bounds_right: 0.0038 

Current progress: 2 percent done.
FAM135B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.383382e-02	ci left: 8.829867e-01	ci right 8.953856e-01	k: 8893	n:10000
Cons ci ratio: 1.116726e-02	ci left: 9.196628e-01	ci right 9.300880e-01	k: 9250	n:10000
KS ci ratio: 2.284292e-02	ci left: 7.378529e-01	ci right 7.550034e-01	k: 7465	n:10000
FAM135B   10000 perm   2 sec   (4123 perm/sec)   p_kst 7.465000e-01   p_cons 9.250000e-01   p_joint 8.893000e-01

Outputting figure to mutsig2_images.part000000000060/FAM135B.21_4297_10000_0.7465_0.925_0.8893.png
                gene_name: FAM135B
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 4 percent done.
FAM111B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.495916e-02	ci left: 4.220628e-01	ci right 4.415769e-01	k: 4318	n:10000
KS ci ratio: 7.746257e-03	ci left: 9.585892e-01	ci right 9.661384e-01	k: 9625	n:10000
FAM111B   10000 perm   2 sec   (4228 perm/sec)   p_kst 9.625000e-01   p_cons 4.318000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM111B.10_2213_10000_0.9625_0.4318_1.png
                gene_name: FAM111B
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
FAM114A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.300083e-02	ci left: 3.441241e-01	ci right 3.629613e-01	k: 3535	n:10000
Cons ci ratio: 1.052060e-01	ci left: 1.154507e-01	ci right 1.283705e-01	k: 1218	n:10000
KS ci ratio: 3.272134e-02	ci left: 5.795829e-01	ci right 5.989651e-01	k: 5893	n:10000
FAM114A1   10000 perm   2 sec   (4916 perm/sec)   p_kst 5.893000e-01   p_cons 1.218000e-01   p_joint 3.535000e-01

Joint ci ratio: 4.439332e-02	ci left: 2.742315e-01	ci right 2.867324e-01	k: 5609	n:20000
Cons ci ratio: 7.013243e-02	ci left: 1.303416e-01	ci right 1.398648e-01	k: 2701	n:20000
KS ci ratio: 2.354499e-02	ci left: 5.739753e-01	ci right 5.877012e-01	k: 11617	n:20000
FAM114A1   20000 perm   5 sec   (4363 perm/sec)   p_kst 5.808500e-01   p_cons 1.350500e-01   p_joint 2.804500e-01

Outputting figure to mutsig2_images.part000000000060/FAM114A1.8_1744_20000_0.58085_0.13505_0.28045.png
                gene_name: FAM114A1
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 8 percent done.
FAM120B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.817710e-02	ci left: 6.499155e-01	ci right 6.685916e-01	k: 6593	n:10000
Cons ci ratio: 5.779280e-02	ci left: 3.059006e-01	ci right 3.242072e-01	k: 3150	n:10000
KS ci ratio: 1.932481e-02	ci left: 7.965889e-01	ci right 8.122334e-01	k: 8045	n:10000
FAM120B   10000 perm   2 sec   (4922 perm/sec)   p_kst 8.045000e-01   p_cons 3.150000e-01   p_joint 6.593000e-01

Outputting figure to mutsig2_images.part000000000060/FAM120B.8_2769_10000_0.8045_0.315_0.6593.png
                gene_name: FAM120B
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 10 percent done.
FAM13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.424362e-02	ci left: 2.625040e-01	ci right 2.800294e-01	k: 2712	n:10000
Cons ci ratio: 1.170498e-02	ci left: 9.126559e-01	ci right 9.234991e-01	k: 9182	n:10000
KS ci ratio: 9.302001e-02	ci left: 1.437406e-01	ci right 1.578635e-01	k: 1507	n:10000
FAM13A   10000 perm   2 sec   (4534 perm/sec)   p_kst 1.507000e-01   p_cons 9.182000e-01   p_joint 2.712000e-01

Outputting figure to mutsig2_images.part000000000060/FAM13A.8_3201_10000_0.1507_0.9182_0.2712.png
                gene_name: FAM13A
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 12 percent done.
FAM133A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.032345e-02	ci left: 2.878562e-01	ci right 3.058623e-01	k: 2968	n:10000
Cons ci ratio: 1.241887e-01	ci left: 8.494677e-02	ci right 9.629302e-02	k: 905	n:10000
KS ci ratio: 2.038162e-02	ci left: 7.790450e-01	ci right 7.951874e-01	k: 7872	n:10000
FAM133A   10000 perm   2 sec   (5231 perm/sec)   p_kst 7.872000e-01   p_cons 9.050000e-02   p_joint 2.968000e-01

Joint ci ratio: 4.912317e-02	ci left: 2.355318e-01	ci right 2.474435e-01	k: 4829	n:20000
Cons ci ratio: 9.339492e-02	ci left: 7.715702e-02	ci right 8.476534e-02	k: 1618	n:20000
KS ci ratio: 1.506795e-02	ci left: 7.660204e-01	ci right 7.777005e-01	k: 15438	n:20000
FAM133A   20000 perm   4 sec   (4571 perm/sec)   p_kst 7.719000e-01   p_cons 8.090000e-02   p_joint 2.414500e-01

Outputting figure to mutsig2_images.part000000000060/FAM133A.7_751_20000_0.7719_0.0809_0.24145.png
                gene_name: FAM133A
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 14 percent done.
FAM13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.259555e-02	ci left: 7.419977e-01	ci right 7.590561e-01	k: 7506	n:10000
Cons ci ratio: 5.086757e-02	ci left: 3.630124e-01	ci right 3.820619e-01	k: 3725	n:10000
KS ci ratio: 2.097034e-02	ci left: 7.692178e-01	ci right 7.856203e-01	k: 7775	n:10000
FAM13B   10000 perm   2 sec   (4872 perm/sec)   p_kst 7.775000e-01   p_cons 3.725000e-01   p_joint 7.506000e-01

Outputting figure to mutsig2_images.part000000000060/FAM13B.7_2902_10000_0.7775_0.3725_0.7506.png
                gene_name: FAM13B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 16 percent done.
FAM116A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.093700e-01	ci left: 1.335536e-02	ci right 1.833248e-02	k: 157	n:10000
Cons ci ratio: 2.272211e-01	ci left: 2.560990e-02	ci right 3.226830e-02	k: 288	n:10000
KS ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
FAM116A   10000 perm   2 sec   (5040 perm/sec)   p_kst 1.600000e-03   p_cons 2.880000e-02   p_joint 1.570000e-02

Joint ci ratio: 2.984783e-01	ci left: 7.274556e-03	ci right 9.871356e-03	k: 170	n:20000
Cons ci ratio: 1.703237e-01	ci left: 2.359904e-02	ci right 2.804027e-02	k: 515	n:20000
KS ci ratio: 6.270744e-01	ci left: 1.344893e-03	ci right 2.606975e-03	k: 38	n:20000
FAM116A   20000 perm   4 sec   (4527 perm/sec)   p_kst 1.900000e-03   p_cons 2.575000e-02   p_joint 8.500000e-03

Joint ci ratio: 3.893910e-01	ci left: 2.712931e-03	ci right 4.052764e-03	k: 100	n:30000
Cons ci ratio: 1.399070e-01	ci left: 2.371339e-02	ci right 2.731263e-02	k: 764	n:30000
KS ci ratio: 5.431258e-01	ci left: 1.266016e-03	ci right 2.234588e-03	k: 51	n:30000
FAM116A   30000 perm   7 sec   (4350 perm/sec)   p_kst 1.700000e-03   p_cons 2.546667e-02   p_joint 3.333333e-03

Joint ci ratio: 4.127340e-01	ci left: 1.787227e-03	ci right 2.737351e-03	k: 89	n:40000
Cons ci ratio: 1.213467e-01	ci left: 2.388016e-02	ci right 2.698926e-02	k: 1016	n:40000
KS ci ratio: 4.749597e-01	ci left: 1.298331e-03	ci right 2.126710e-03	k: 67	n:40000
FAM116A   40000 perm   9 sec   (4228 perm/sec)   p_kst 1.675000e-03   p_cons 2.540000e-02   p_joint 2.225000e-03

Joint ci ratio: 3.896565e-01	ci left: 1.627567e-03	ci right 2.432010e-03	k: 100	n:50000
Cons ci ratio: 1.080681e-01	ci left: 2.425270e-02	ci right 2.704274e-02	k: 1281	n:50000
KS ci ratio: 4.351983e-01	ci left: 1.268898e-03	ci right 1.990949e-03	k: 80	n:50000
FAM116A   50000 perm   12 sec   (4138 perm/sec)   p_kst 1.600000e-03   p_cons 2.562000e-02   p_joint 2.000000e-03

Joint ci ratio: 3.717225e-01	ci left: 1.507011e-03	ci right 2.209247e-03	k: 110	n:60000
Cons ci ratio: 9.863268e-02	ci left: 2.438343e-02	ci right 2.692940e-02	k: 1538	n:60000
KS ci ratio: 3.897229e-01	ci left: 1.356266e-03	ci right 2.026748e-03	k: 100	n:60000
FAM116A   60000 perm   15 sec   (4060 perm/sec)   p_kst 1.666667e-03   p_cons 2.563333e-02   p_joint 1.833333e-03

Joint ci ratio: 3.517120e-01	ci left: 1.460564e-03	ci right 2.096164e-03	k: 123	n:70000
Cons ci ratio: 8.743255e-02	ci left: 2.669247e-02	ci right 2.914688e-02	k: 1953	n:70000
KS ci ratio: 3.717722e-01	ci left: 1.291695e-03	ci right 1.893691e-03	k: 110	n:70000
FAM116A   70000 perm   18 sec   (3989 perm/sec)   p_kst 1.571429e-03   p_cons 2.790000e-02   p_joint 1.757143e-03

Joint ci ratio: 3.652768e-01	ci left: 1.175589e-03	ci right 1.711615e-03	k: 114	n:80000
Cons ci ratio: 8.137696e-02	ci left: 2.703924e-02	ci right 2.934515e-02	k: 2254	n:80000
KS ci ratio: 3.462029e-01	ci left: 1.323594e-03	ci right 1.888539e-03	k: 127	n:80000
FAM116A   80000 perm   20 sec   (3917 perm/sec)   p_kst 1.587500e-03   p_cons 2.817500e-02   p_joint 1.425000e-03

Joint ci ratio: 3.669070e-01	ci left: 1.034864e-03	ci right 1.509332e-03	k: 113	n:90000
Cons ci ratio: 7.672104e-02	ci left: 2.710633e-02	ci right 2.927978e-02	k: 2536	n:90000
KS ci ratio: 3.322314e-01	ci left: 1.288339e-03	ci right 1.811301e-03	k: 138	n:90000
FAM116A   90000 perm   23 sec   (3850 perm/sec)   p_kst 1.533333e-03   p_cons 2.817778e-02   p_joint 1.255556e-03

Joint ci ratio: 3.669305e-01	ci left: 9.313678e-04	ci right 1.358416e-03	k: 113	n:100000
Cons ci ratio: 7.304962e-02	ci left: 2.696657e-02	ci right 2.902093e-02	k: 2798	n:100000
KS ci ratio: 3.136047e-01	ci left: 1.315739e-03	ci right 1.813889e-03	k: 155	n:100000
FAM116A   100000 perm   26 sec   (3777 perm/sec)   p_kst 1.550000e-03   p_cons 2.798000e-02   p_joint 1.130000e-03

Joint ci ratio: 4.107558e-01	ci left: 6.579645e-04	ci right 1.005590e-03	k: 90	n:110000
Cons ci ratio: 6.957923e-02	ci left: 2.706875e-02	ci right 2.902896e-02	k: 3084	n:110000
KS ci ratio: 2.969380e-01	ci left: 1.347242e-03	ci right 1.825110e-03	k: 173	n:110000
FAM116A   110000 perm   30 sec   (3716 perm/sec)   p_kst 1.572727e-03   p_cons 2.803636e-02   p_joint 8.181818e-04

Joint ci ratio: 3.879712e-01	ci left: 6.856020e-04	ci right 1.022609e-03	k: 101	n:120000
Cons ci ratio: 6.688803e-02	ci left: 2.689349e-02	ci right 2.876275e-02	k: 3338	n:120000
KS ci ratio: 2.783512e-01	ci left: 1.420565e-03	ci right 1.887382e-03	k: 197	n:120000
FAM116A   120000 perm   33 sec   (3662 perm/sec)   p_kst 1.641667e-03   p_cons 2.781667e-02   p_joint 8.416667e-04

Joint ci ratio: 3.449641e-01	ci left: 8.215049e-04	ci right 1.170602e-03	k: 128	n:130000
Cons ci ratio: 6.420236e-02	ci left: 2.698118e-02	ci right 2.877843e-02	k: 3623	n:130000
KS ci ratio: 2.611061e-01	ci left: 1.504961e-03	ci right 1.963877e-03	k: 224	n:130000
FAM116A   130000 perm   36 sec   (3610 perm/sec)   p_kst 1.723077e-03   p_cons 2.786923e-02   p_joint 9.846154e-04

Joint ci ratio: 3.518692e-01	ci left: 7.302303e-04	ci right 1.048171e-03	k: 123	n:140000
Cons ci ratio: 6.159772e-02	ci left: 2.724759e-02	ci right 2.898632e-02	k: 3935	n:140000
KS ci ratio: 2.517684e-01	ci left: 1.511090e-03	ci right 1.952815e-03	k: 241	n:140000
FAM116A   140000 perm   39 sec   (3559 perm/sec)   p_kst 1.721429e-03   p_cons 2.810714e-02   p_joint 8.785714e-04

Joint ci ratio: 3.518797e-01	ci left: 6.815451e-04	ci right 9.782986e-04	k: 123	n:150000
Cons ci ratio: 5.957555e-02	ci left: 2.721693e-02	ci right 2.889471e-02	k: 4207	n:150000
KS ci ratio: 2.452704e-01	ci left: 1.491619e-03	ci right 1.914683e-03	k: 254	n:150000
FAM116A   150000 perm   43 sec   (3506 perm/sec)   p_kst 1.693333e-03   p_cons 2.804667e-02   p_joint 8.200000e-04

Joint ci ratio: 3.397647e-01	ci left: 6.903150e-04	ci right 9.782697e-04	k: 132	n:160000
Cons ci ratio: 5.776018e-02	ci left: 2.717244e-02	ci right 2.879473e-02	k: 4476	n:160000
KS ci ratio: 2.401500e-01	ci left: 1.462959e-03	ci right 1.867942e-03	k: 265	n:160000
FAM116A   160000 perm   46 sec   (3458 perm/sec)   p_kst 1.656250e-03   p_cons 2.797500e-02   p_joint 8.250000e-04

Joint ci ratio: 3.518969e-01	ci left: 6.013587e-04	ci right 8.632127e-04	k: 123	n:170000
Cons ci ratio: 5.601026e-02	ci left: 2.722090e-02	ci right 2.879525e-02	k: 4760	n:170000
KS ci ratio: 2.336536e-01	ci left: 1.459901e-03	ci right 1.851526e-03	k: 280	n:170000
FAM116A   170000 perm   50 sec   (3411 perm/sec)   p_kst 1.647059e-03   p_cons 2.800000e-02   p_joint 7.235294e-04

Joint ci ratio: 3.477201e-01	ci left: 5.831512e-04	ci right 8.333836e-04	k: 126	n:180000
Cons ci ratio: 5.430520e-02	ci left: 2.736880e-02	ci right 2.890200e-02	k: 5063	n:180000
KS ci ratio: 2.292139e-01	ci left: 1.436362e-03	ci right 1.813314e-03	k: 291	n:180000
FAM116A   180000 perm   54 sec   (3364 perm/sec)   p_kst 1.616667e-03   p_cons 2.812778e-02   p_joint 7.000000e-04

Joint ci ratio: 3.423730e-01	ci left: 5.716868e-04	ci right 8.123923e-04	k: 130	n:190000
Cons ci ratio: 5.296054e-02	ci left: 2.728356e-02	ci right 2.877299e-02	k: 5324	n:190000
KS ci ratio: 2.228190e-01	ci left: 1.445173e-03	ci right 1.812406e-03	k: 308	n:190000
FAM116A   190000 perm   57 sec   (3322 perm/sec)   p_kst 1.621053e-03   p_cons 2.802105e-02   p_joint 6.842105e-04

Joint ci ratio: 3.335766e-01	ci left: 5.751328e-04	ci right 8.097315e-04	k: 137	n:200000
Cons ci ratio: 5.152159e-02	ci left: 2.740477e-02	ci right 2.885895e-02	k: 5625	n:200000
KS ci ratio: 2.162677e-01	ci left: 1.462693e-03	ci right 1.821999e-03	k: 327	n:200000
FAM116A   200000 perm   61 sec   (3281 perm/sec)   p_kst 1.635000e-03   p_cons 2.812500e-02   p_joint 6.850000e-04

Joint ci ratio: 2.336905e-01	ci left: 1.181804e-03	ci right 1.498884e-03	k: 280	n:210000
Cons ci ratio: 5.021132e-02	ci left: 2.749611e-02	ci right 2.891696e-02	k: 5922	n:210000
KS ci ratio: 2.108718e-01	ci left: 1.469665e-03	ci right 1.820512e-03	k: 344	n:210000
FAM116A   210000 perm   65 sec   (3239 perm/sec)   p_kst 1.638095e-03   p_cons 2.820000e-02   p_joint 1.333333e-03

Joint ci ratio: 2.292478e-01	ci left: 1.175186e-03	ci right 1.483648e-03	k: 291	n:220000
Cons ci ratio: 4.892741e-02	ci left: 2.765592e-02	ci right 2.904745e-02	k: 6236	n:220000
KS ci ratio: 2.070093e-01	ci left: 1.458860e-03	ci right 1.799941e-03	k: 357	n:220000
FAM116A   220000 perm   69 sec   (3197 perm/sec)   p_kst 1.622727e-03   p_cons 2.834545e-02   p_joint 1.322727e-03

Joint ci ratio: 2.341217e-01	ci left: 1.074939e-03	ci right 1.363954e-03	k: 279	n:230000
Cons ci ratio: 4.788408e-02	ci left: 2.763466e-02	ci right 2.899465e-02	k: 6511	n:230000
KS ci ratio: 2.017243e-01	ci left: 1.473814e-03	ci right 1.808511e-03	k: 376	n:230000
FAM116A   230000 perm   73 sec   (3158 perm/sec)   p_kst 1.634783e-03   p_cons 2.830870e-02   p_joint 1.213043e-03

Joint ci ratio: 2.324711e-01	ci left: 1.045840e-03	ci right 1.324764e-03	k: 283	n:240000
Cons ci ratio: 4.696891e-02	ci left: 2.754132e-02	ci right 2.887011e-02	k: 6768	n:240000
KS ci ratio: 1.958362e-01	ci left: 1.503472e-03	ci right 1.833750e-03	k: 399	n:240000
FAM116A   240000 perm   77 sec   (3118 perm/sec)   p_kst 1.662500e-03   p_cons 2.820000e-02   p_joint 1.179167e-03

Joint ci ratio: 2.384343e-01	ci left: 9.513038e-04	ci right 1.212485e-03	k: 269	n:250000
Cons ci ratio: 4.597314e-02	ci left: 2.760993e-02	ci right 2.891304e-02	k: 7064	n:250000
KS ci ratio: 1.915727e-01	ci left: 1.511842e-03	ci right 1.835886e-03	k: 417	n:250000
FAM116A   250000 perm   81 sec   (3080 perm/sec)   p_kst 1.668000e-03   p_cons 2.825600e-02   p_joint 1.076000e-03

Joint ci ratio: 2.366906e-01	ci left: 9.291828e-04	ci right 1.182151e-03	k: 273	n:260000
Cons ci ratio: 4.514555e-02	ci left: 2.754420e-02	ci right 2.882019e-02	k: 7326	n:260000
KS ci ratio: 1.875761e-01	ci left: 1.519641e-03	ci right 1.837787e-03	k: 435	n:260000
FAM116A   260000 perm   86 sec   (3038 perm/sec)   p_kst 1.673077e-03   p_cons 2.817692e-02   p_joint 1.050000e-03

Joint ci ratio: 2.429906e-01	ci left: 8.460276e-04	ci right 1.083413e-03	k: 259	n:270000
Cons ci ratio: 4.432504e-02	ci left: 2.752750e-02	ci right 2.877895e-02	k: 7600	n:270000
KS ci ratio: 1.850485e-01	ci left: 1.505728e-03	ci right 1.816237e-03	k: 447	n:270000
FAM116A   270000 perm   90 sec   (3004 perm/sec)   p_kst 1.655556e-03   p_cons 2.814815e-02   p_joint 9.592593e-04

Joint ci ratio: 2.425284e-01	ci left: 8.191651e-04	ci right 1.048510e-03	k: 260	n:280000
Cons ci ratio: 4.347675e-02	ci left: 2.760053e-02	ci right 2.883069e-02	k: 7899	n:280000
KS ci ratio: 1.822241e-01	ci left: 1.499653e-03	ci right 1.803668e-03	k: 461	n:280000
FAM116A   280000 perm   94 sec   (2971 perm/sec)   p_kst 1.646429e-03   p_cons 2.821071e-02   p_joint 9.285714e-04

Joint ci ratio: 2.402400e-01	ci left: 8.071160e-04	ci right 1.030638e-03	k: 265	n:290000
Cons ci ratio: 4.275323e-02	ci left: 2.756977e-02	ci right 2.877761e-02	k: 8169	n:290000
KS ci ratio: 1.791485e-01	ci left: 1.500618e-03	ci right 1.799138e-03	k: 477	n:290000
FAM116A   290000 perm   99 sec   (2940 perm/sec)   p_kst 1.644828e-03   p_cons 2.816897e-02   p_joint 9.137931e-04

Joint ci ratio: 2.406969e-01	ci left: 7.770781e-04	ci right 9.927515e-04	k: 264	n:300000
Cons ci ratio: 4.204673e-02	ci left: 2.756432e-02	ci right 2.875148e-02	k: 8446	n:300000
KS ci ratio: 1.762236e-01	ci left: 1.501559e-03	ci right 1.794869e-03	k: 493	n:300000
FAM116A   300000 perm   103 sec   (2909 perm/sec)   p_kst 1.643333e-03   p_cons 2.815333e-02   p_joint 8.800000e-04

Joint ci ratio: 2.425394e-01	ci left: 7.398872e-04	ci right 9.470469e-04	k: 260	n:310000
Cons ci ratio: 4.131327e-02	ci left: 2.763921e-02	ci right 2.880834e-02	k: 8748	n:310000
KS ci ratio: 1.727601e-01	ci left: 1.514821e-03	ci right 1.804300e-03	k: 513	n:310000
FAM116A   310000 perm   108 sec   (2879 perm/sec)   p_kst 1.654839e-03   p_cons 2.821935e-02   p_joint 8.387097e-04

Joint ci ratio: 2.397996e-01	ci left: 7.343825e-04	ci right 9.373329e-04	k: 266	n:320000
Cons ci ratio: 4.067242e-02	ci left: 2.763533e-02	ci right 2.878573e-02	k: 9026	n:320000
KS ci ratio: 1.699720e-01	ci left: 1.518330e-03	ci right 1.803317e-03	k: 530	n:320000
FAM116A   320000 perm   112 sec   (2849 perm/sec)   p_kst 1.656250e-03   p_cons 2.820625e-02   p_joint 8.312500e-04

Joint ci ratio: 2.420819e-01	ci left: 6.978900e-04	ci right 8.928668e-04	k: 261	n:330000
Cons ci ratio: 4.006493e-02	ci left: 2.762582e-02	ci right 2.875825e-02	k: 9302	n:330000
KS ci ratio: 1.679298e-01	ci left: 1.510047e-03	ci right 1.789730e-03	k: 543	n:330000
FAM116A   330000 perm   117 sec   (2814 perm/sec)   p_kst 1.645455e-03   p_cons 2.818788e-02   p_joint 7.909091e-04

Joint ci ratio: 2.389117e-01	ci left: 6.967115e-04	ci right 8.884326e-04	k: 268	n:340000
Cons ci ratio: 3.949448e-02	ci left: 2.760241e-02	ci right 2.871741e-02	k: 9573	n:340000
KS ci ratio: 1.662586e-01	ci left: 1.496633e-03	ci right 1.770796e-03	k: 554	n:340000
FAM116A   340000 perm   122 sec   (2784 perm/sec)   p_kst 1.629412e-03   p_cons 2.815588e-02   p_joint 7.882353e-04

Joint ci ratio: 2.341707e-01	ci left: 7.063720e-04	ci right 8.963358e-04	k: 279	n:350000
Cons ci ratio: 3.897013e-02	ci left: 2.754933e-02	ci right 2.864707e-02	k: 9833	n:350000
KS ci ratio: 1.636260e-01	ci left: 1.503179e-03	ci right 1.773751e-03	k: 572	n:350000
FAM116A   350000 perm   127 sec   (2757 perm/sec)   p_kst 1.634286e-03   p_cons 2.809429e-02   p_joint 7.971429e-04

Joint ci ratio: 2.337560e-01	ci left: 6.893648e-04	ci right 8.743790e-04	k: 280	n:360000
Cons ci ratio: 3.842892e-02	ci left: 2.755157e-02	ci right 2.863382e-02	k: 10112	n:360000
KS ci ratio: 1.624975e-01	ci left: 1.482738e-03	ci right 1.747610e-03	k: 580	n:360000
FAM116A   360000 perm   132 sec   (2726 perm/sec)   p_kst 1.611111e-03   p_cons 2.808889e-02   p_joint 7.777778e-04

Joint ci ratio: 2.317045e-01	ci left: 6.834587e-04	ci right 8.650475e-04	k: 285	n:370000
Cons ci ratio: 3.785534e-02	ci left: 2.763145e-02	ci right 2.870028e-02	k: 10420	n:370000
KS ci ratio: 1.605748e-01	ci left: 1.478972e-03	ci right 1.739744e-03	k: 594	n:370000
FAM116A   370000 perm   137 sec   (2699 perm/sec)   p_kst 1.605405e-03   p_cons 2.816216e-02   p_joint 7.702703e-04

Joint ci ratio: 2.416336e-01	ci left: 6.085310e-04	ci right 7.781801e-04	k: 262	n:380000
Cons ci ratio: 3.738025e-02	ci left: 2.760032e-02	ci right 2.865426e-02	k: 10687	n:380000
KS ci ratio: 1.574295e-01	ci left: 1.500698e-03	ci right 1.759629e-03	k: 618	n:380000
FAM116A   380000 perm   142 sec   (2672 perm/sec)   p_kst 1.626316e-03   p_cons 2.812368e-02   p_joint 6.894737e-04

Joint ci ratio: 2.358725e-01	ci left: 6.242679e-04	ci right 7.935493e-04	k: 275	n:390000
Cons ci ratio: 3.694517e-02	ci left: 2.753783e-02	ci right 2.857689e-02	k: 10941	n:390000
KS ci ratio: 1.555563e-01	ci left: 1.499174e-03	ci right 1.754477e-03	k: 633	n:390000
FAM116A   390000 perm   147 sec   (2647 perm/sec)   p_kst 1.623077e-03   p_cons 2.805385e-02   p_joint 7.051282e-04

Joint ci ratio: 2.329371e-01	ci left: 6.251336e-04	ci right 7.922364e-04	k: 282	n:400000
Cons ci ratio: 3.650314e-02	ci left: 2.751075e-02	ci right 2.853611e-02	k: 11208	n:400000
KS ci ratio: 1.526916e-01	ci left: 1.519382e-03	ci right 1.772925e-03	k: 657	n:400000
FAM116A   400000 perm   153 sec   (2621 perm/sec)   p_kst 1.642500e-03   p_cons 2.802000e-02   p_joint 7.050000e-04

Joint ci ratio: 2.305067e-01	ci left: 6.236710e-04	ci right 7.883958e-04	k: 288	n:410000
Cons ci ratio: 3.607175e-02	ci left: 2.749231e-02	ci right 2.850462e-02	k: 11478	n:410000
KS ci ratio: 1.509806e-01	ci left: 1.517519e-03	ci right 1.767658e-03	k: 672	n:410000
FAM116A   410000 perm   158 sec   (2598 perm/sec)   p_kst 1.639024e-03   p_cons 2.799512e-02   p_joint 7.024390e-04

Joint ci ratio: 2.333539e-01	ci left: 5.931222e-04	ci right 7.519928e-04	k: 281	n:420000
Cons ci ratio: 3.564594e-02	ci left: 2.748898e-02	ci right 2.848897e-02	k: 11754	n:420000
KS ci ratio: 1.486780e-01	ci left: 1.529514e-03	ci right 1.777443e-03	k: 693	n:420000
FAM116A   420000 perm   163 sec   (2574 perm/sec)   p_kst 1.650000e-03   p_cons 2.798571e-02   p_joint 6.690476e-04

Joint ci ratio: 2.301124e-01	ci left: 5.968535e-04	ci right 7.541872e-04	k: 289	n:430000
Cons ci ratio: 3.523787e-02	ci left: 2.748126e-02	ci right 2.846930e-02	k: 12028	n:430000
KS ci ratio: 1.473054e-01	ci left: 1.523056e-03	ci right 1.767459e-03	k: 706	n:430000
FAM116A   430000 perm   169 sec   (2545 perm/sec)   p_kst 1.641860e-03   p_cons 2.797209e-02   p_joint 6.720930e-04

Joint ci ratio: 2.273844e-01	ci left: 5.982862e-04	ci right 7.538657e-04	k: 296	n:440000
Cons ci ratio: 3.483331e-02	ci left: 2.748973e-02	ci right 2.846650e-02	k: 12309	n:440000
KS ci ratio: 1.458686e-01	ci left: 1.519092e-03	ci right 1.760274e-03	k: 720	n:440000
FAM116A   440000 perm   175 sec   (2521 perm/sec)   p_kst 1.636364e-03   p_cons 2.797500e-02   p_joint 6.727273e-04

Joint ci ratio: 1.937432e-01	ci left: 8.208480e-04	ci right 9.990123e-04	k: 408	n:450000
Cons ci ratio: 3.442550e-02	ci left: 2.752433e-02	ci right 2.849065e-02	k: 12602	n:450000
KS ci ratio: 1.443747e-01	ci left: 1.517458e-03	ci right 1.755700e-03	k: 735	n:450000
FAM116A   450000 perm   180 sec   (2498 perm/sec)   p_kst 1.633333e-03   p_cons 2.800444e-02   p_joint 9.066667e-04

Joint ci ratio: 1.911889e-01	ci left: 8.257645e-04	ci right 1.002358e-03	k: 419	n:460000
Cons ci ratio: 3.405887e-02	ci left: 2.751437e-02	ci right 2.846985e-02	k: 12875	n:460000
KS ci ratio: 1.426408e-01	ci left: 1.522195e-03	ci right 1.758066e-03	k: 753	n:460000
FAM116A   460000 perm   186 sec   (2475 perm/sec)   p_kst 1.636957e-03   p_cons 2.798913e-02   p_joint 9.108696e-04

Joint ci ratio: 1.896157e-01	ci left: 8.223786e-04	ci right 9.966344e-04	k: 426	n:470000
Cons ci ratio: 3.370634e-02	ci left: 2.750066e-02	ci right 2.844559e-02	k: 13146	n:470000
KS ci ratio: 1.408765e-01	ci left: 1.528800e-03	ci right 1.762519e-03	k: 772	n:470000
FAM116A   470000 perm   192 sec   (2451 perm/sec)   p_kst 1.642553e-03   p_cons 2.797021e-02   p_joint 9.063830e-04

Joint ci ratio: 1.887348e-01	ci left: 8.131840e-04	ci right 9.845992e-04	k: 430	n:480000
Cons ci ratio: 3.334920e-02	ci left: 2.751238e-02	ci right 2.844750e-02	k: 13429	n:480000
KS ci ratio: 1.389127e-01	ci left: 1.541180e-03	ci right 1.773235e-03	k: 794	n:480000
FAM116A   480000 perm   198 sec   (2423 perm/sec)   p_kst 1.654167e-03   p_cons 2.797708e-02   p_joint 8.958333e-04

Joint ci ratio: 1.859505e-01	ci left: 8.218752e-04	ci right 9.922783e-04	k: 443	n:490000
Cons ci ratio: 3.298709e-02	ci left: 2.754998e-02	ci right 2.847602e-02	k: 13725	n:490000
KS ci ratio: 1.375357e-01	ci left: 1.541251e-03	ci right 1.770828e-03	k: 810	n:490000
FAM116A   490000 perm   204 sec   (2400 perm/sec)   p_kst 1.653061e-03   p_cons 2.801020e-02   p_joint 9.040816e-04

Joint ci ratio: 1.880842e-01	ci left: 7.863726e-04	ci right 9.514993e-04	k: 433	n:500000
Cons ci ratio: 3.266410e-02	ci left: 2.754050e-02	ci right 2.845698e-02	k: 13998	n:500000
KS ci ratio: 1.363641e-01	ci left: 1.537467e-03	ci right 1.764371e-03	k: 824	n:500000
FAM116A   500000 perm   210 sec   (2379 perm/sec)   p_kst 1.648000e-03   p_cons 2.799600e-02   p_joint 8.660000e-04

Joint ci ratio: 1.857446e-01	ci left: 7.915132e-04	ci right 9.554189e-04	k: 444	n:510000
Cons ci ratio: 3.233643e-02	ci left: 2.755477e-02	ci right 2.846237e-02	k: 14283	n:510000
KS ci ratio: 1.345808e-01	ci left: 1.548996e-03	ci right 1.774373e-03	k: 846	n:510000
FAM116A   510000 perm   216 sec   (2357 perm/sec)   p_kst 1.658824e-03   p_cons 2.800588e-02   p_joint 8.705882e-04

Joint ci ratio: 1.849162e-01	ci left: 7.836269e-04	ci right 9.450947e-04	k: 448	n:520000
Cons ci ratio: 3.205921e-02	ci left: 2.749985e-02	ci right 2.839773e-02	k: 14532	n:520000
KS ci ratio: 1.331730e-01	ci left: 1.552664e-03	ci right 1.776024e-03	k: 864	n:520000
FAM116A   520000 perm   223 sec   (2337 perm/sec)   p_kst 1.661538e-03   p_cons 2.794615e-02   p_joint 8.615385e-04

Joint ci ratio: 1.678278e-01	ci left: 9.420022e-04	ci right 1.116356e-03	k: 544	n:530000
Cons ci ratio: 3.175695e-02	ci left: 2.750133e-02	ci right 2.839063e-02	k: 14810	n:530000
KS ci ratio: 1.312882e-01	ci left: 1.568979e-03	ci right 1.791243e-03	k: 889	n:530000
FAM116A   530000 perm   229 sec   (2315 perm/sec)   p_kst 1.677358e-03   p_cons 2.794340e-02   p_joint 1.026415e-03

Joint ci ratio: 1.724857e-01	ci left: 8.731380e-04	ci right 1.039698e-03	k: 515	n:540000
Cons ci ratio: 3.147490e-02	ci left: 2.748258e-02	ci right 2.836324e-02	k: 15077	n:540000
KS ci ratio: 1.301959e-01	ci left: 1.566793e-03	ci right 1.786757e-03	k: 904	n:540000
FAM116A   540000 perm   235 sec   (2294 perm/sec)   p_kst 1.674074e-03   p_cons 2.792037e-02   p_joint 9.537037e-04

Joint ci ratio: 1.847148e-01	ci left: 7.426162e-04	ci right 8.954482e-04	k: 449	n:550000
Cons ci ratio: 3.120127e-02	ci left: 2.746273e-02	ci right 2.833498e-02	k: 15343	n:550000
KS ci ratio: 1.291303e-01	ci left: 1.564693e-03	ci right 1.782428e-03	k: 919	n:550000
FAM116A   550000 perm   242 sec   (2275 perm/sec)   p_kst 1.670909e-03   p_cons 2.789636e-02   p_joint 8.163636e-04

Joint ci ratio: 1.828948e-01	ci left: 7.446873e-04	ci right 8.962681e-04	k: 458	n:560000
Cons ci ratio: 3.089904e-02	ci left: 2.750566e-02	ci right 2.837066e-02	k: 15644	n:560000
KS ci ratio: 1.282280e-01	ci left: 1.559219e-03	ci right 1.774560e-03	k: 932	n:560000
FAM116A   560000 perm   248 sec   (2256 perm/sec)   p_kst 1.664286e-03   p_cons 2.793571e-02   p_joint 8.178571e-04

Joint ci ratio: 1.813215e-01	ci left: 7.450179e-04	ci right 8.952182e-04	k: 466	n:570000
Cons ci ratio: 3.064103e-02	ci left: 2.748444e-02	ci right 2.834142e-02	k: 15909	n:570000
KS ci ratio: 1.271425e-01	ci left: 1.559038e-03	ci right 1.772394e-03	k: 948	n:570000
FAM116A   570000 perm   255 sec   (2234 perm/sec)   p_kst 1.663158e-03   p_cons 2.791053e-02   p_joint 8.175439e-04

Joint ci ratio: 1.797881e-01	ci left: 7.453425e-04	ci right 8.941993e-04	k: 474	n:580000
Cons ci ratio: 3.037682e-02	ci left: 2.748622e-02	ci right 2.833574e-02	k: 16187	n:580000
KS ci ratio: 1.256933e-01	ci left: 1.568890e-03	ci right 1.780965e-03	k: 970	n:580000
FAM116A   580000 perm   262 sec   (2213 perm/sec)   p_kst 1.672414e-03   p_cons 2.790862e-02   p_joint 8.172414e-04

Joint ci ratio: 1.790365e-01	ci left: 7.391845e-04	ci right 8.861274e-04	k: 478	n:590000
Cons ci ratio: 3.010992e-02	ci left: 2.750480e-02	ci right 2.834730e-02	k: 16475	n:590000
KS ci ratio: 1.248607e-01	ci left: 1.563642e-03	ci right 1.773503e-03	k: 983	n:590000
FAM116A   590000 perm   269 sec   (2193 perm/sec)   p_kst 1.666102e-03   p_cons 2.792373e-02   p_joint 8.101695e-04

Joint ci ratio: 1.773777e-01	ci left: 7.411958e-04	ci right 8.870270e-04	k: 487	n:600000
Cons ci ratio: 2.986919e-02	ci left: 2.748805e-02	ci right 2.832318e-02	k: 16742	n:600000
KS ci ratio: 1.241692e-01	ci left: 1.555343e-03	ci right 1.762850e-03	k: 994	n:600000
FAM116A   600000 perm   276 sec   (2175 perm/sec)   p_kst 1.656667e-03   p_cons 2.790333e-02   p_joint 8.116667e-04

Joint ci ratio: 1.766558e-01	ci left: 7.353117e-04	ci right 8.793334e-04	k: 491	n:610000
Cons ci ratio: 2.963145e-02	ci left: 2.747675e-02	ci right 2.830479e-02	k: 17012	n:610000
KS ci ratio: 1.234890e-01	ci left: 1.547319e-03	ci right 1.752542e-03	k: 1005	n:610000
FAM116A   610000 perm   283 sec   (2158 perm/sec)   p_kst 1.647541e-03   p_cons 2.788852e-02   p_joint 8.049180e-04

Joint ci ratio: 1.755887e-01	ci left: 7.327025e-04	ci right 8.752544e-04	k: 497	n:620000
Cons ci ratio: 2.938182e-02	ci left: 2.749788e-02	ci right 2.831945e-02	k: 17302	n:620000
KS ci ratio: 1.226389e-01	ci left: 1.544248e-03	ci right 1.747551e-03	k: 1019	n:620000
FAM116A   620000 perm   290 sec   (2141 perm/sec)   p_kst 1.643548e-03   p_cons 2.790645e-02   p_joint 8.016129e-04

Joint ci ratio: 1.730016e-01	ci left: 7.438436e-04	ci right 8.862081e-04	k: 512	n:630000
Cons ci ratio: 2.913924e-02	ci left: 2.751678e-02	ci right 2.833201e-02	k: 17591	n:630000
KS ci ratio: 1.215707e-01	ci left: 1.547435e-03	ci right 1.749255e-03	k: 1037	n:630000
FAM116A   630000 perm   297 sec   (2123 perm/sec)   p_kst 1.646032e-03   p_cons 2.792222e-02   p_joint 8.126984e-04

Joint ci ratio: 1.730027e-01	ci left: 7.322207e-04	ci right 8.723616e-04	k: 512	n:640000
Cons ci ratio: 2.891672e-02	ci left: 2.750874e-02	ci right 2.831741e-02	k: 17863	n:640000
KS ci ratio: 1.207593e-01	ci left: 1.544468e-03	ci right 1.744461e-03	k: 1051	n:640000
FAM116A   640000 perm   304 sec   (2104 perm/sec)   p_kst 1.642187e-03   p_cons 2.791094e-02   p_joint 8.000000e-04

Joint ci ratio: 1.711768e-01	ci left: 7.371501e-04	ci right 8.765917e-04	k: 523	n:650000
Cons ci ratio: 2.870166e-02	ci left: 2.749639e-02	ci right 2.829859e-02	k: 18132	n:650000
KS ci ratio: 1.196831e-01	ci left: 1.549059e-03	ci right 1.747732e-03	k: 1070	n:650000
FAM116A   650000 perm   311 sec   (2088 perm/sec)   p_kst 1.646154e-03   p_cons 2.789538e-02   p_joint 8.046154e-04

Joint ci ratio: 1.698849e-01	ci left: 7.375850e-04	ci right 8.759481e-04	k: 531	n:660000
Cons ci ratio: 2.849133e-02	ci left: 2.748444e-02	ci right 2.828032e-02	k: 18401	n:660000
KS ci ratio: 1.186897e-01	ci left: 1.552048e-03	ci right 1.749337e-03	k: 1088	n:660000
FAM116A   660000 perm   319 sec   (2072 perm/sec)   p_kst 1.648485e-03   p_cons 2.788030e-02   p_joint 8.045455e-04

Joint ci ratio: 1.690926e-01	ci left: 7.337223e-04	ci right 8.706533e-04	k: 536	n:670000
Cons ci ratio: 2.826843e-02	ci left: 2.750548e-02	ci right 2.829563e-02	k: 18692	n:670000
KS ci ratio: 1.178808e-01	ci left: 1.550609e-03	ci right 1.746278e-03	k: 1103	n:670000
FAM116A   670000 perm   326 sec   (2055 perm/sec)   p_kst 1.646269e-03   p_cons 2.789851e-02   p_joint 8.000000e-04

Joint ci ratio: 1.670816e-01	ci left: 7.412459e-04	ci right 8.777704e-04	k: 549	n:680000
Cons ci ratio: 2.803549e-02	ci left: 2.755513e-02	ci right 2.834008e-02	k: 19003	n:680000
KS ci ratio: 1.168791e-01	ci left: 1.554927e-03	ci right 1.749358e-03	k: 1122	n:680000
FAM116A   680000 perm   334 sec   (2038 perm/sec)   p_kst 1.650000e-03   p_cons 2.794559e-02   p_joint 8.073529e-04

Joint ci ratio: 1.663277e-01	ci left: 7.374472e-04	ci right 8.725977e-04	k: 554	n:690000
Cons ci ratio: 2.784904e-02	ci left: 2.752419e-02	ci right 2.830297e-02	k: 19259	n:690000
KS ci ratio: 1.162600e-01	ci left: 1.549276e-03	ci right 1.741904e-03	k: 1134	n:690000
FAM116A   690000 perm   341 sec   (2021 perm/sec)   p_kst 1.643478e-03   p_cons 2.791159e-02   p_joint 8.028986e-04

Joint ci ratio: 1.655838e-01	ci left: 7.337583e-04	ci right 8.675715e-04	k: 559	n:700000
Cons ci ratio: 2.764950e-02	ci left: 2.752680e-02	ci right 2.829997e-02	k: 19538	n:700000
KS ci ratio: 1.154492e-01	ci left: 1.549338e-03	ci right 1.740538e-03	k: 1150	n:700000
FAM116A   700000 perm   349 sec   (2006 perm/sec)   p_kst 1.642857e-03   p_cons 2.791143e-02   p_joint 7.985714e-04

Joint ci ratio: 1.642690e-01	ci left: 7.355766e-04	ci right 8.685509e-04	k: 568	n:710000
Cons ci ratio: 2.744421e-02	ci left: 2.754893e-02	ci right 2.831690e-02	k: 19831	n:710000
KS ci ratio: 1.146059e-01	ci left: 1.550771e-03	ci right 1.740656e-03	k: 1167	n:710000
FAM116A   710000 perm   356 sec   (1992 perm/sec)   p_kst 1.643662e-03   p_cons 2.793099e-02   p_joint 8.000000e-04

Joint ci ratio: 1.635523e-01	ci left: 7.320197e-04	ci right 8.637169e-04	k: 573	n:720000
Cons ci ratio: 2.727482e-02	ci left: 2.750839e-02	ci right 2.827042e-02	k: 20079	n:720000
KS ci ratio: 1.137327e-01	ci left: 1.553519e-03	ci right 1.742194e-03	k: 1185	n:720000
FAM116A   720000 perm   364 sec   (1977 perm/sec)   p_kst 1.645833e-03   p_cons 2.788750e-02   p_joint 7.958333e-04

Joint ci ratio: 1.614555e-01	ci left: 7.417047e-04	ci right 8.732676e-04	k: 588	n:730000
Cons ci ratio: 2.708386e-02	ci left: 2.751796e-02	ci right 2.827483e-02	k: 20363	n:730000
KS ci ratio: 1.127386e-01	ci left: 1.560190e-03	ci right 1.747909e-03	k: 1206	n:730000
FAM116A   730000 perm   372 sec   (1963 perm/sec)   p_kst 1.652055e-03   p_cons 2.789452e-02   p_joint 8.054795e-04

Joint ci ratio: 1.603701e-01	ci left: 7.420572e-04	ci right 8.727124e-04	k: 596	n:740000
Cons ci ratio: 2.691027e-02	ci left: 2.750044e-02	ci right 2.825191e-02	k: 20627	n:740000
KS ci ratio: 1.119988e-01	ci left: 1.560121e-03	ci right 1.746518e-03	k: 1222	n:740000
FAM116A   740000 perm   380 sec   (1950 perm/sec)   p_kst 1.651351e-03   p_cons 2.787432e-02   p_joint 8.054054e-04

Joint ci ratio: 1.605055e-01	ci left: 7.308829e-04	ci right 8.596899e-04	k: 595	n:750000
Cons ci ratio: 2.673208e-02	ci left: 2.749930e-02	ci right 2.824568e-02	k: 20903	n:750000
KS ci ratio: 1.116349e-01	ci left: 1.549687e-03	ci right 1.734197e-03	k: 1230	n:750000
FAM116A   750000 perm   388 sec   (1934 perm/sec)   p_kst 1.640000e-03   p_cons 2.787067e-02   p_joint 7.933333e-04

Joint ci ratio: 1.594390e-01	ci left: 7.313710e-04	ci right 8.593255e-04	k: 603	n:760000
Cons ci ratio: 2.655352e-02	ci left: 2.750605e-02	ci right 2.824755e-02	k: 21185	n:760000
KS ci ratio: 1.110951e-01	ci left: 1.544646e-03	ci right 1.727608e-03	k: 1242	n:760000
FAM116A   760000 perm   396 sec   (1918 perm/sec)   p_kst 1.634211e-03   p_cons 2.787500e-02   p_joint 7.934211e-04

Joint ci ratio: 1.613219e-01	ci left: 7.044197e-04	ci right 8.292555e-04	k: 589	n:770000
Cons ci ratio: 2.637469e-02	ci left: 2.752038e-02	ci right 2.825720e-02	k: 21473	n:770000
KS ci ratio: 1.104308e-01	ci left: 1.543526e-03	ci right 1.725191e-03	k: 1257	n:770000
FAM116A   770000 perm   404 sec   (1905 perm/sec)   p_kst 1.632468e-03   p_cons 2.788701e-02   p_joint 7.649351e-04

Joint ci ratio: 1.855642e-01	ci left: 5.187434e-04	ci right 6.260477e-04	k: 445	n:780000
Cons ci ratio: 2.620687e-02	ci left: 2.751908e-02	ci right 2.825110e-02	k: 21749	n:780000
KS ci ratio: 1.095631e-01	ci left: 1.548673e-03	ci right 1.729419e-03	k: 1277	n:780000
FAM116A   780000 perm   413 sec   (1890 perm/sec)   p_kst 1.637179e-03   p_cons 2.788333e-02   p_joint 5.705128e-04

Joint ci ratio: 1.845328e-01	ci left: 5.182130e-04	ci right 6.247450e-04	k: 450	n:790000
Cons ci ratio: 2.603491e-02	ci left: 2.753291e-02	ci right 2.826043e-02	k: 22037	n:790000
KS ci ratio: 1.090526e-01	ci left: 1.543844e-03	ci right 1.723133e-03	k: 1289	n:790000
FAM116A   790000 perm   421 sec   (1877 perm/sec)   p_kst 1.631646e-03   p_cons 2.789494e-02   p_joint 5.696203e-04

Joint ci ratio: 1.839224e-01	ci left: 5.153123e-04	ci right 6.208586e-04	k: 453	n:800000
Cons ci ratio: 2.589614e-02	ci left: 2.748431e-02	ci right 2.820661e-02	k: 22275	n:800000
KS ci ratio: 1.085492e-01	ci left: 1.539138e-03	ci right 1.717002e-03	k: 1301	n:800000
FAM116A   800000 perm   429 sec   (1865 perm/sec)   p_kst 1.626250e-03   p_cons 2.784375e-02   p_joint 5.662500e-04

Joint ci ratio: 1.837207e-01	ci left: 5.101281e-04	ci right 6.144851e-04	k: 454	n:810000
Cons ci ratio: 2.572315e-02	ci left: 2.751298e-02	ci right 2.823114e-02	k: 22575	n:810000
KS ci ratio: 1.075212e-01	ci left: 1.550167e-03	ci right 1.727502e-03	k: 1326	n:810000
FAM116A   810000 perm   437 sec   (1852 perm/sec)   p_kst 1.637037e-03   p_cons 2.787037e-02   p_joint 5.604938e-04

Joint ci ratio: 1.829186e-01	ci left: 5.085612e-04	ci right 6.120931e-04	k: 458	n:820000
Cons ci ratio: 2.555703e-02	ci left: 2.753370e-02	ci right 2.824769e-02	k: 22869	n:820000
KS ci ratio: 1.069986e-01	ci left: 1.546690e-03	ci right 1.722714e-03	k: 1339	n:820000
FAM116A   820000 perm   446 sec   (1837 perm/sec)   p_kst 1.632927e-03   p_cons 2.788902e-02   p_joint 5.585366e-04

Joint ci ratio: 1.819304e-01	ci left: 5.081829e-04	ci right 6.110174e-04	k: 463	n:830000
Cons ci ratio: 2.540820e-02	ci left: 2.752400e-02	ci right 2.823352e-02	k: 23138	n:830000
KS ci ratio: 1.063263e-01	ci left: 1.547991e-03	ci right 1.722986e-03	k: 1356	n:830000
FAM116A   830000 perm   455 sec   (1824 perm/sec)   p_kst 1.633735e-03   p_cons 2.787711e-02   p_joint 5.578313e-04

Joint ci ratio: 1.811515e-01	ci left: 5.066786e-04	ci right 6.087215e-04	k: 467	n:840000
Cons ci ratio: 2.526027e-02	ci left: 2.751809e-02	ci right 2.822327e-02	k: 23410	n:840000
KS ci ratio: 1.058208e-01	ci left: 1.544628e-03	ci right 1.718361e-03	k: 1369	n:840000
FAM116A   840000 perm   463 sec   (1812 perm/sec)   p_kst 1.629762e-03   p_cons 2.786905e-02   p_joint 5.559524e-04

Joint ci ratio: 1.792461e-01	ci left: 5.119519e-04	ci right 6.138547e-04	k: 477	n:850000
Cons ci ratio: 2.510726e-02	ci left: 2.752870e-02	ci right 2.822982e-02	k: 23696	n:850000
KS ci ratio: 1.052463e-01	ci left: 1.543637e-03	ci right 1.716258e-03	k: 1384	n:850000
FAM116A   850000 perm   472 sec   (1801 perm/sec)   p_kst 1.628235e-03   p_cons 2.787765e-02   p_joint 5.611765e-04

Joint ci ratio: 1.785010e-01	ci left: 5.104418e-04	ci right 6.115761e-04	k: 481	n:860000
Cons ci ratio: 2.496128e-02	ci left: 2.752983e-02	ci right 2.822684e-02	k: 23974	n:860000
KS ci ratio: 1.046436e-01	ci left: 1.543804e-03	ci right 1.715394e-03	k: 1400	n:860000
FAM116A   860000 perm   481 sec   (1787 perm/sec)   p_kst 1.627907e-03   p_cons 2.787674e-02   p_joint 5.593023e-04

Joint ci ratio: 1.817370e-01	ci left: 4.859148e-04	ci right 5.841270e-04	k: 464	n:870000
Cons ci ratio: 2.481730e-02	ci left: 2.753209e-02	ci right 2.822508e-02	k: 24253	n:870000
KS ci ratio: 1.040512e-01	ci left: 1.543970e-03	ci right 1.714548e-03	k: 1416	n:870000
FAM116A   870000 perm   490 sec   (1775 perm/sec)   p_kst 1.627586e-03   p_cons 2.787701e-02   p_joint 5.333333e-04

Joint ci ratio: 1.803841e-01	ci left: 4.879871e-04	ci right 5.858038e-04	k: 471	n:880000
Cons ci ratio: 2.467733e-02	ci left: 2.753092e-02	ci right 2.821992e-02	k: 24529	n:880000
KS ci ratio: 1.033243e-01	ci left: 1.548563e-03	ci right 1.718381e-03	k: 1436	n:880000
FAM116A   880000 perm   499 sec   (1764 perm/sec)   p_kst 1.631818e-03   p_cons 2.787386e-02   p_joint 5.352273e-04

Joint ci ratio: 1.803847e-01	ci left: 4.825040e-04	ci right 5.792219e-04	k: 471	n:890000
Cons ci ratio: 2.453461e-02	ci left: 2.754096e-02	ci right 2.822616e-02	k: 24815	n:890000
KS ci ratio: 1.027185e-01	ci left: 1.549773e-03	ci right 1.718666e-03	k: 1453	n:890000
FAM116A   890000 perm   508 sec   (1752 perm/sec)   p_kst 1.632584e-03   p_cons 2.788202e-02   p_joint 5.292135e-04

Joint ci ratio: 1.796253e-01	ci left: 4.813870e-04	ci right 5.774307e-04	k: 475	n:900000
Cons ci ratio: 2.438785e-02	ci left: 2.756514e-02	ci right 2.824679e-02	k: 25114	n:900000
KS ci ratio: 1.021232e-01	ci left: 1.550958e-03	ci right 1.718942e-03	k: 1470	n:900000
FAM116A   900000 perm   517 sec   (1740 perm/sec)   p_kst 1.633333e-03   p_cons 2.790444e-02   p_joint 5.277778e-04

Joint ci ratio: 1.391425e-01	ci left: 8.107873e-04	ci right 9.330850e-04	k: 792	n:910000
Cons ci ratio: 2.424172e-02	ci left: 2.759318e-02	ci right 2.827137e-02	k: 25417	n:910000
KS ci ratio: 1.013337e-01	ci left: 1.558547e-03	ci right 1.725970e-03	k: 1493	n:910000
FAM116A   910000 perm   526 sec   (1729 perm/sec)   p_kst 1.640659e-03   p_cons 2.793077e-02   p_joint 8.703297e-04

Joint ci ratio: 1.419477e-01	ci left: 7.694623e-04	ci right 8.880646e-04	k: 761	n:920000
Cons ci ratio: 2.411315e-02	ci left: 2.758712e-02	ci right 2.826151e-02	k: 25689	n:920000
KS ci ratio: 1.008623e-01	ci left: 1.556438e-03	ci right 1.722812e-03	k: 1507	n:920000
FAM116A   920000 perm   536 sec   (1717 perm/sec)   p_kst 1.638043e-03   p_cons 2.792283e-02   p_joint 8.271739e-04

Joint ci ratio: 1.436566e-01	ci left: 7.425244e-04	ci right 8.584706e-04	k: 743	n:930000
Cons ci ratio: 2.397283e-02	ci left: 2.761219e-02	ci right 2.828322e-02	k: 25990	n:930000
KS ci ratio: 1.000360e-01	ci left: 1.565909e-03	ci right 1.731843e-03	k: 1532	n:930000
FAM116A   930000 perm   546 sec   (1702 perm/sec)   p_kst 1.647312e-03   p_cons 2.794624e-02   p_joint 7.989247e-04

Joint ci ratio: 1.330687e-01	ci left: 8.609567e-04	ci right 9.847050e-04	k: 866	n:940000
Cons ci ratio: 2.384192e-02	ci left: 2.762089e-02	ci right 2.828841e-02	k: 26276	n:940000
KS ci ratio: 9.977649e-02	ci left: 1.557548e-03	ci right 1.722143e-03	k: 1540	n:940000
FAM116A   940000 perm   556 sec   (1690 perm/sec)   p_kst 1.638298e-03   p_cons 2.795319e-02   p_joint 9.212766e-04

Joint ci ratio: 1.322324e-01	ci left: 8.630888e-04	ci right 9.863026e-04	k: 877	n:950000
Cons ci ratio: 2.371682e-02	ci left: 2.762103e-02	ci right 2.828501e-02	k: 26554	n:950000
KS ci ratio: 9.929448e-02	ci left: 1.556549e-03	ci right 1.720197e-03	k: 1555	n:950000
FAM116A   950000 perm   566 sec   (1679 perm/sec)   p_kst 1.636842e-03   p_cons 2.795158e-02   p_joint 9.231579e-04

Joint ci ratio: 1.350328e-01	ci left: 8.178505e-04	ci right 9.372774e-04	k: 841	n:960000
Cons ci ratio: 2.359683e-02	ci left: 2.761393e-02	ci right 2.827434e-02	k: 26825	n:960000
KS ci ratio: 9.881938e-02	ci left: 1.555573e-03	ci right 1.718291e-03	k: 1570	n:960000
FAM116A   960000 perm   575 sec   (1669 perm/sec)   p_kst 1.635417e-03   p_cons 2.794271e-02   p_joint 8.760417e-04

Joint ci ratio: 1.343959e-01	ci left: 8.173885e-04	ci right 9.361400e-04	k: 849	n:970000
Cons ci ratio: 2.348800e-02	ci left: 2.758546e-02	ci right 2.824210e-02	k: 27075	n:970000
KS ci ratio: 9.847549e-02	ci left: 1.550597e-03	ci right 1.712197e-03	k: 1581	n:970000
FAM116A   970000 perm   585 sec   (1659 perm/sec)   p_kst 1.629897e-03   p_cons 2.791237e-02   p_joint 8.752577e-04

Joint ci ratio: 1.339242e-01	ci left: 8.149647e-04	ci right 9.329154e-04	k: 855	n:980000
Cons ci ratio: 2.336309e-02	ci left: 2.759817e-02	ci right 2.825157e-02	k: 27365	n:980000
KS ci ratio: 9.801200e-02	ci left: 1.549704e-03	ci right 1.710407e-03	k: 1596	n:980000
FAM116A   980000 perm   595 sec   (1648 perm/sec)   p_kst 1.628571e-03   p_cons 2.792347e-02   p_joint 8.724490e-04

Joint ci ratio: 1.341603e-01	ci left: 8.038037e-04	ci right 9.203606e-04	k: 852	n:990000
Cons ci ratio: 2.324446e-02	ci left: 2.760058e-02	ci right 2.825067e-02	k: 27645	n:990000
KS ci ratio: 9.758531e-02	ci left: 1.547846e-03	ci right 1.707618e-03	k: 1610	n:990000
FAM116A   990000 perm   605 sec   (1637 perm/sec)   p_kst 1.626263e-03   p_cons 2.792424e-02   p_joint 8.606061e-04

Joint ci ratio: 1.418593e-01	ci left: 7.088683e-04	ci right 8.180569e-04	k: 762	n:1000000
Cons ci ratio: 2.312678e-02	ci left: 2.760494e-02	ci right 2.825180e-02	k: 27927	n:1000000
KS ci ratio: 9.695520e-02	ci left: 1.552857e-03	ci right 1.712052e-03	k: 1631	n:1000000
FAM116A   1000000 perm   615 sec   (1626 perm/sec)   p_kst 1.631000e-03   p_cons 2.792700e-02   p_joint 7.620000e-04

Joint ci ratio: 1.413970e-01	ci left: 7.066248e-04	ci right 8.150832e-04	k: 767	n:1010000
Cons ci ratio: 2.301632e-02	ci left: 2.759642e-02	ci right 2.823996e-02	k: 28196	n:1010000
KS ci ratio: 9.639557e-02	ci left: 1.555839e-03	ci right 1.714367e-03	k: 1650	n:1010000
FAM116A   1010000 perm   625 sec   (1617 perm/sec)   p_kst 1.633663e-03   p_cons 2.791683e-02   p_joint 7.594059e-04

Joint ci ratio: 1.403949e-01	ci left: 7.101013e-04	ci right 8.182563e-04	k: 778	n:1020000
Cons ci ratio: 2.290495e-02	ci left: 2.759393e-02	ci right 2.823425e-02	k: 28471	n:1020000
KS ci ratio: 9.584552e-02	ci left: 1.558766e-03	ci right 1.716635e-03	k: 1669	n:1020000
FAM116A   1020000 perm   635 sec   (1606 perm/sec)   p_kst 1.636275e-03   p_cons 2.791275e-02   p_joint 7.627451e-04

Joint ci ratio: 1.395022e-01	ci left: 7.125760e-04	ci right 8.203605e-04	k: 788	n:1030000
Cons ci ratio: 2.279477e-02	ci left: 2.759245e-02	ci right 2.822962e-02	k: 28747	n:1030000
KS ci ratio: 9.547479e-02	ci left: 1.555951e-03	ci right 1.712892e-03	k: 1682	n:1030000
FAM116A   1030000 perm   645 sec   (1596 perm/sec)   p_kst 1.633010e-03   p_cons 2.790971e-02   p_joint 7.650485e-04

Joint ci ratio: 1.393261e-01	ci left: 7.075802e-04	ci right 8.144626e-04	k: 790	n:1040000
Cons ci ratio: 2.267732e-02	ci left: 2.761205e-02	ci right 2.824635e-02	k: 29045	n:1040000
KS ci ratio: 9.496821e-02	ci left: 1.557886e-03	ci right 1.714141e-03	k: 1700	n:1040000
FAM116A   1040000 perm   656 sec   (1586 perm/sec)   p_kst 1.634615e-03   p_cons 2.792788e-02   p_joint 7.596154e-04

Joint ci ratio: 1.389754e-01	ci left: 7.045182e-04	ci right 8.106480e-04	k: 794	n:1050000
Cons ci ratio: 2.256840e-02	ci left: 2.761519e-02	ci right 2.824647e-02	k: 29326	n:1050000
KS ci ratio: 9.452471e-02	ci left: 1.557926e-03	ci right 1.713415e-03	k: 1716	n:1050000
FAM116A   1050000 perm   666 sec   (1577 perm/sec)   p_kst 1.634286e-03   p_cons 2.792952e-02   p_joint 7.561905e-04

Joint ci ratio: 1.375123e-01	ci left: 7.133550e-04	ci right 8.195922e-04	k: 811	n:1060000
Cons ci ratio: 2.245557e-02	ci left: 2.763141e-02	ci right 2.825986e-02	k: 29621	n:1060000
KS ci ratio: 9.389760e-02	ci left: 1.564416e-03	ci right 1.719460e-03	k: 1739	n:1060000
FAM116A   1060000 perm   676 sec   (1567 perm/sec)   p_kst 1.640566e-03   p_cons 2.794434e-02   p_joint 7.650943e-04

Joint ci ratio: 1.378530e-01	ci left: 7.030784e-04	ci right 8.080658e-04	k: 807	n:1070000
Cons ci ratio: 2.236057e-02	ci left: 2.760829e-02	ci right 2.823352e-02	k: 29874	n:1070000
KS ci ratio: 9.341559e-02	ci left: 1.566223e-03	ci right 1.720607e-03	k: 1757	n:1070000
FAM116A   1070000 perm   687 sec   (1558 perm/sec)   p_kst 1.642056e-03   p_cons 2.791963e-02   p_joint 7.542056e-04

Joint ci ratio: 1.370915e-01	ci left: 7.046151e-04	ci right 8.092034e-04	k: 816	n:1080000
Cons ci ratio: 2.225650e-02	ci left: 2.761047e-02	ci right 2.823281e-02	k: 30154	n:1080000
KS ci ratio: 9.286240e-02	ci left: 1.570713e-03	ci right 1.724572e-03	k: 1778	n:1080000
FAM116A   1080000 perm   699 sec   (1545 perm/sec)   p_kst 1.646296e-03   p_cons 2.792037e-02   p_joint 7.555556e-04

Joint ci ratio: 1.366741e-01	ci left: 7.025808e-04	ci right 8.065237e-04	k: 821	n:1090000
Cons ci ratio: 2.215163e-02	ci left: 2.761809e-02	ci right 2.823763e-02	k: 30440	n:1090000
KS ci ratio: 9.244762e-02	ci left: 1.570642e-03	ci right 1.723769e-03	k: 1794	n:1090000
FAM116A   1090000 perm   711 sec   (1534 perm/sec)   p_kst 1.645872e-03   p_cons 2.792661e-02   p_joint 7.532110e-04

Joint ci ratio: 1.360959e-01	ci left: 7.023402e-04	ci right 8.057723e-04	k: 828	n:1100000
Cons ci ratio: 2.205118e-02	ci left: 2.761835e-02	ci right 2.823505e-02	k: 30718	n:1100000
KS ci ratio: 9.203835e-02	ci left: 1.570573e-03	ci right 1.722979e-03	k: 1810	n:1100000
FAM116A   1100000 perm   723 sec   (1520 perm/sec)   p_kst 1.645455e-03   p_cons 2.792545e-02   p_joint 7.527273e-04

Joint ci ratio: 1.356874e-01	ci left: 7.003641e-04	ci right 8.031707e-04	k: 833	n:1110000
Cons ci ratio: 2.195573e-02	ci left: 2.760965e-02	ci right 2.822345e-02	k: 30986	n:1110000
KS ci ratio: 9.155921e-02	ci left: 1.573148e-03	ci right 1.724967e-03	k: 1829	n:1110000
FAM116A   1110000 perm   734 sec   (1512 perm/sec)   p_kst 1.647748e-03   p_cons 2.791532e-02   p_joint 7.504505e-04

Joint ci ratio: 1.398617e-01	ci left: 6.518674e-04	ci right 7.507443e-04	k: 784	n:1120000
Cons ci ratio: 2.185684e-02	ci left: 2.761265e-02	ci right 2.822372e-02	k: 31267	n:1120000
KS ci ratio: 9.108747e-02	ci left: 1.575679e-03	ci right 1.726917e-03	k: 1848	n:1120000
FAM116A   1120000 perm   745 sec   (1504 perm/sec)   p_kst 1.650000e-03   p_cons 2.791696e-02   p_joint 7.000000e-04

Joint ci ratio: 1.396842e-01	ci left: 6.478066e-04	ci right 7.459324e-04	k: 786	n:1130000
Cons ci ratio: 2.176281e-02	ci left: 2.760681e-02	ci right 2.821509e-02	k: 31538	n:1130000
KS ci ratio: 9.084241e-02	ci left: 1.570383e-03	ci right 1.720686e-03	k: 1858	n:1130000
FAM116A   1130000 perm   756 sec   (1495 perm/sec)   p_kst 1.644248e-03   p_cons 2.790973e-02   p_joint 6.955752e-04

Joint ci ratio: 1.391548e-01	ci left: 6.472036e-04	ci right 7.448358e-04	k: 792	n:1140000
Cons ci ratio: 2.166754e-02	ci left: 2.760718e-02	ci right 2.821277e-02	k: 31816	n:1140000
KS ci ratio: 9.042985e-02	ci left: 1.571182e-03	ci right 1.720842e-03	k: 1875	n:1140000
FAM116A   1140000 perm   767 sec   (1486 perm/sec)   p_kst 1.644737e-03   p_cons 2.790877e-02   p_joint 6.947368e-04

Joint ci ratio: 1.386314e-01	ci left: 6.466118e-04	ci right 7.437575e-04	k: 798	n:1150000
Cons ci ratio: 2.157662e-02	ci left: 2.759976e-02	ci right 2.820262e-02	k: 32085	n:1150000
KS ci ratio: 9.011829e-02	ci left: 1.568568e-03	ci right 1.717438e-03	k: 1888	n:1150000
FAM116A   1150000 perm   778 sec   (1477 perm/sec)   p_kst 1.641739e-03   p_cons 2.790000e-02   p_joint 6.939130e-04

Joint ci ratio: 1.381138e-01	ci left: 6.460309e-04	ci right 7.426972e-04	k: 804	n:1160000
Cons ci ratio: 2.148615e-02	ci left: 2.759419e-02	ci right 2.819437e-02	k: 32356	n:1160000
KS ci ratio: 8.976266e-02	ci left: 1.567686e-03	ci right 1.715854e-03	k: 1903	n:1160000
FAM116A   1160000 perm   789 sec   (1469 perm/sec)   p_kst 1.640517e-03   p_cons 2.789310e-02   p_joint 6.931034e-04

Joint ci ratio: 1.375172e-01	ci left: 6.462859e-04	ci right 7.425384e-04	k: 811	n:1170000
Cons ci ratio: 2.139007e-02	ci left: 2.760573e-02	ci right 2.820344e-02	k: 32647	n:1170000
KS ci ratio: 8.934128e-02	ci left: 1.569328e-03	ci right 1.716918e-03	k: 1921	n:1170000
FAM116A   1170000 perm   801 sec   (1461 perm/sec)   p_kst 1.641880e-03   p_cons 2.790342e-02   p_joint 6.931624e-04

Joint ci ratio: 1.380289e-01	ci left: 6.358992e-04	ci right 7.309861e-04	k: 805	n:1180000
Cons ci ratio: 2.130358e-02	ci left: 2.759601e-02	ci right 2.819106e-02	k: 32913	n:1180000
KS ci ratio: 8.892579e-02	ci left: 1.570942e-03	ci right 1.717962e-03	k: 1939	n:1180000
FAM116A   1180000 perm   812 sec   (1454 perm/sec)   p_kst 1.643220e-03   p_cons 2.789237e-02   p_joint 6.822034e-04

Joint ci ratio: 1.376028e-01	ci left: 6.346123e-04	ci right 7.291899e-04	k: 810	n:1190000
Cons ci ratio: 2.121156e-02	ci left: 2.760317e-02	ci right 2.819577e-02	k: 33199	n:1190000
KS ci ratio: 8.844819e-02	ci left: 1.574997e-03	ci right 1.721563e-03	k: 1960	n:1190000
FAM116A   1190000 perm   823 sec   (1446 perm/sec)   p_kst 1.647059e-03   p_cons 2.789832e-02   p_joint 6.806723e-04

Joint ci ratio: 1.164549e-01	ci left: 8.883886e-04	ci right 9.990429e-04	k: 1131	n:1200000
Cons ci ratio: 2.111423e-02	ci left: 2.762679e-02	ci right 2.821715e-02	k: 33505	n:1200000
KS ci ratio: 8.811190e-02	ci left: 1.574096e-03	ci right 1.719993e-03	k: 1975	n:1200000
FAM116A   1200000 perm   835 sec   (1438 perm/sec)   p_kst 1.645833e-03   p_cons 2.792083e-02   p_joint 9.425000e-04

Joint ci ratio: 1.200660e-01	ci left: 8.273107e-04	ci right 9.337795e-04	k: 1064	n:1210000
Cons ci ratio: 2.102975e-02	ci left: 2.762044e-02	ci right 2.820827e-02	k: 33775	n:1210000
KS ci ratio: 8.777941e-02	ci left: 1.573211e-03	ci right 1.718447e-03	k: 1990	n:1210000
FAM116A   1210000 perm   846 sec   (1431 perm/sec)   p_kst 1.644628e-03   p_cons 2.791322e-02   p_joint 8.793388e-04

Joint ci ratio: 1.196176e-01	ci left: 8.268902e-04	ci right 9.328794e-04	k: 1072	n:1220000
Cons ci ratio: 2.094628e-02	ci left: 2.761419e-02	ci right 2.819953e-02	k: 34045	n:1220000
KS ci ratio: 8.736346e-02	ci left: 1.575549e-03	ci right 1.720276e-03	k: 2009	n:1220000
FAM116A   1220000 perm   857 sec   (1423 perm/sec)   p_kst 1.646721e-03   p_cons 2.790574e-02   p_joint 8.786885e-04

Joint ci ratio: 1.222103e-01	ci left: 7.846875e-04	ci right 8.876050e-04	k: 1027	n:1230000
Cons ci ratio: 2.085816e-02	ci left: 2.762261e-02	ci right 2.820563e-02	k: 34333	n:1230000
KS ci ratio: 8.701782e-02	ci left: 1.575464e-03	ci right 1.719582e-03	k: 2025	n:1230000
FAM116A   1230000 perm   869 sec   (1415 perm/sec)   p_kst 1.646341e-03   p_cons 2.791301e-02   p_joint 8.349593e-04

Joint ci ratio: 1.217964e-01	ci left: 7.838323e-04	ci right 8.862643e-04	k: 1034	n:1240000
Cons ci ratio: 2.076807e-02	ci left: 2.763892e-02	ci right 2.821974e-02	k: 34631	n:1240000
KS ci ratio: 8.669752e-02	ci left: 1.574592e-03	ci right 1.718074e-03	k: 2040	n:1240000
FAM116A   1240000 perm   881 sec   (1408 perm/sec)   p_kst 1.645161e-03   p_cons 2.792823e-02   p_joint 8.338710e-04

Joint ci ratio: 1.213867e-01	ci left: 7.829913e-04	ci right 8.849445e-04	k: 1041	n:1250000
Cons ci ratio: 2.069254e-02	ci left: 2.761995e-02	ci right 2.819824e-02	k: 34885	n:1250000
KS ci ratio: 8.646502e-02	ci left: 1.570605e-03	ci right 1.713320e-03	k: 2051	n:1250000
FAM116A   1250000 perm   892 sec   (1401 perm/sec)   p_kst 1.640800e-03   p_cons 2.790800e-02   p_joint 8.328000e-04

Joint ci ratio: 1.209810e-01	ci left: 7.821642e-04	ci right 8.836450e-04	k: 1048	n:1260000
Cons ci ratio: 2.060667e-02	ci left: 2.763051e-02	ci right 2.820659e-02	k: 35176	n:1260000
KS ci ratio: 8.617165e-02	ci left: 1.569011e-03	ci right 1.711073e-03	k: 2065	n:1260000
FAM116A   1260000 perm   904 sec   (1394 perm/sec)   p_kst 1.638889e-03   p_cons 2.791746e-02   p_joint 8.317460e-04

Joint ci ratio: 1.204653e-01	ci left: 7.828780e-04	ci right 8.839877e-04	k: 1057	n:1270000
Cons ci ratio: 2.052633e-02	ci left: 2.762915e-02	ci right 2.820293e-02	k: 35452	n:1270000
KS ci ratio: 8.579864e-02	ci left: 1.570525e-03	ci right 1.712078e-03	k: 2083	n:1270000
FAM116A   1270000 perm   916 sec   (1387 perm/sec)   p_kst 1.640157e-03   p_cons 2.791496e-02   p_joint 8.322835e-04

Joint ci ratio: 1.199000e-01	ci left: 7.843395e-04	ci right 8.851287e-04	k: 1067	n:1280000
Cons ci ratio: 2.044016e-02	ci left: 2.764570e-02	ci right 2.821738e-02	k: 35751	n:1280000
KS ci ratio: 8.547118e-02	ci left: 1.570488e-03	ci right 1.711470e-03	k: 2099	n:1280000
FAM116A   1280000 perm   928 sec   (1379 perm/sec)   p_kst 1.639844e-03   p_cons 2.793047e-02   p_joint 8.335938e-04

Joint ci ratio: 1.194534e-01	ci left: 7.842752e-04	ci right 8.846544e-04	k: 1075	n:1290000
Cons ci ratio: 2.036756e-02	ci left: 2.762882e-02	ci right 2.819811e-02	k: 36007	n:1290000
KS ci ratio: 8.514744e-02	ci left: 1.570452e-03	ci right 1.710870e-03	k: 2115	n:1290000
FAM116A   1290000 perm   940 sec   (1372 perm/sec)   p_kst 1.639535e-03   p_cons 2.791240e-02   p_joint 8.333333e-04

Joint ci ratio: 1.191770e-01	ci left: 7.819737e-04	ci right 8.818103e-04	k: 1080	n:1300000
Cons ci ratio: 2.028939e-02	ci left: 2.762905e-02	ci right 2.819613e-02	k: 36285	n:1300000
KS ci ratio: 8.496718e-02	ci left: 1.565147e-03	ci right 1.704780e-03	k: 2124	n:1300000
FAM116A   1300000 perm   952 sec   (1365 perm/sec)   p_kst 1.633846e-03   p_cons 2.791154e-02   p_joint 8.307692e-04

Joint ci ratio: 1.188477e-01	ci left: 7.804482e-04	ci right 8.797954e-04	k: 1086	n:1310000
Cons ci ratio: 2.021668e-02	ci left: 2.761713e-02	ci right 2.818191e-02	k: 36547	n:1310000
KS ci ratio: 8.466892e-02	ci left: 1.564407e-03	ci right 1.703460e-03	k: 2139	n:1310000
FAM116A   1310000 perm   965 sec   (1358 perm/sec)   p_kst 1.632824e-03   p_cons 2.789847e-02   p_joint 8.290076e-04

Joint ci ratio: 1.190126e-01	ci left: 7.723304e-04	ci right 8.707902e-04	k: 1083	n:1320000
Cons ci ratio: 2.014473e-02	ci left: 2.760539e-02	ci right 2.816790e-02	k: 36809	n:1320000
KS ci ratio: 8.417837e-02	ci left: 1.571095e-03	ci right 1.709894e-03	k: 2164	n:1320000
FAM116A   1320000 perm   978 sec   (1350 perm/sec)   p_kst 1.639394e-03   p_cons 2.788561e-02   p_joint 8.204545e-04

Joint ci ratio: 1.187938e-01	ci left: 7.694414e-04	ci right 8.673399e-04	k: 1087	n:1330000
Cons ci ratio: 2.007049e-02	ci left: 2.760206e-02	ci right 2.816240e-02	k: 37082	n:1330000
KS ci ratio: 8.398484e-02	ci left: 1.566643e-03	ci right 1.704715e-03	k: 2174	n:1330000
FAM116A   1330000 perm   990 sec   (1344 perm/sec)   p_kst 1.634586e-03   p_cons 2.788120e-02   p_joint 8.172932e-04

Joint ci ratio: 1.184135e-01	ci left: 7.687682e-04	ci right 8.662460e-04	k: 1094	n:1340000
Cons ci ratio: 1.999816e-02	ci left: 2.759582e-02	ci right 2.815399e-02	k: 37351	n:1340000
KS ci ratio: 8.360123e-02	ci left: 1.569564e-03	ci right 1.707231e-03	k: 2194	n:1340000
FAM116A   1340000 perm   1002 sec   (1337 perm/sec)   p_kst 1.637313e-03   p_cons 2.787388e-02   p_joint 8.164179e-04

Joint ci ratio: 1.197344e-01	ci left: 7.458248e-04	ci right 8.415230e-04	k: 1070	n:1350000
Cons ci ratio: 1.992852e-02	ci left: 2.758451e-02	ci right 2.814048e-02	k: 37613	n:1350000
KS ci ratio: 8.331707e-02	ci left: 1.568817e-03	ci right 1.705928e-03	k: 2209	n:1350000
FAM116A   1350000 perm   1014 sec   (1331 perm/sec)   p_kst 1.636296e-03   p_cons 2.786148e-02   p_joint 7.925926e-04

Joint ci ratio: 1.194005e-01	ci left: 7.446205e-04	ci right 8.398790e-04	k: 1076	n:1360000
Cons ci ratio: 1.985340e-02	ci left: 2.759020e-02	ci right 2.814417e-02	k: 37898	n:1360000
KS ci ratio: 8.305449e-02	ci left: 1.567362e-03	ci right 1.703892e-03	k: 2223	n:1360000
FAM116A   1360000 perm   1027 sec   (1324 perm/sec)   p_kst 1.634559e-03   p_cons 2.786618e-02   p_joint 7.911765e-04

Joint ci ratio: 1.206976e-01	ci left: 7.229007e-04	ci right 8.164569e-04	k: 1053	n:1370000
Cons ci ratio: 1.977859e-02	ci left: 2.759726e-02	ci right 2.814926e-02	k: 38185	n:1370000
KS ci ratio: 8.273885e-02	ci left: 1.568073e-03	ci right 1.704121e-03	k: 2240	n:1370000
FAM116A   1370000 perm   1040 sec   (1318 perm/sec)   p_kst 1.635036e-03   p_cons 2.787226e-02   p_joint 7.686131e-04

Joint ci ratio: 1.198474e-01	ci left: 7.282049e-04	ci right 8.217368e-04	k: 1068	n:1380000
Cons ci ratio: 1.971042e-02	ci left: 2.758836e-02	ci right 2.813826e-02	k: 38450	n:1380000
KS ci ratio: 8.231731e-02	ci left: 1.573033e-03	ci right 1.708783e-03	k: 2263	n:1380000
FAM116A   1380000 perm   1052 sec   (1311 perm/sec)   p_kst 1.639855e-03   p_cons 2.786232e-02   p_joint 7.739130e-04

Joint ci ratio: 1.194570e-01	ci left: 7.278513e-04	ci right 8.210117e-04	k: 1075	n:1390000
Cons ci ratio: 1.963981e-02	ci left: 2.758818e-02	ci right 2.813609e-02	k: 38727	n:1390000
KS ci ratio: 8.210015e-02	ci left: 1.570171e-03	ci right 1.705300e-03	k: 2275	n:1390000
FAM116A   1390000 perm   1065 sec   (1305 perm/sec)   p_kst 1.636691e-03   p_cons 2.786115e-02   p_joint 7.733813e-04

Joint ci ratio: 1.191805e-01	ci left: 7.261172e-04	ci right 8.188253e-04	k: 1080	n:1400000
Cons ci ratio: 1.957487e-02	ci left: 2.757450e-02	ci right 2.812031e-02	k: 38985	n:1400000
KS ci ratio: 8.179522e-02	ci left: 1.570850e-03	ci right 1.705511e-03	k: 2292	n:1400000
FAM116A   1400000 perm   1078 sec   (1298 perm/sec)   p_kst 1.637143e-03   p_cons 2.784643e-02   p_joint 7.714286e-04

Joint ci ratio: 1.187420e-01	ci left: 7.264723e-04	ci right 8.188606e-04	k: 1088	n:1410000
Cons ci ratio: 1.950980e-02	ci left: 2.756314e-02	ci right 2.810689e-02	k: 39246	n:1410000
KS ci ratio: 8.145836e-02	ci left: 1.572909e-03	ci right 1.707165e-03	k: 2311	n:1410000
FAM116A   1410000 perm   1091 sec   (1292 perm/sec)   p_kst 1.639007e-03   p_cons 2.783404e-02   p_joint 7.716312e-04

Joint ci ratio: 1.190160e-01	ci left: 7.179397e-04	ci right 8.094684e-04	k: 1083	n:1420000
Cons ci ratio: 1.943677e-02	ci left: 2.757577e-02	ci right 2.811771e-02	k: 39541	n:1420000
KS ci ratio: 8.114306e-02	ci left: 1.574251e-03	ci right 1.708077e-03	k: 2329	n:1420000
FAM116A   1420000 perm   1105 sec   (1286 perm/sec)   p_kst 1.640141e-03   p_cons 2.784577e-02   p_joint 7.626761e-04

Joint ci ratio: 1.185793e-01	ci left: 7.183473e-04	ci right 8.095683e-04	k: 1091	n:1430000
Cons ci ratio: 1.937406e-02	ci left: 2.756178e-02	ci right 2.810167e-02	k: 39798	n:1430000
KS ci ratio: 8.074532e-02	ci left: 1.579001e-03	ci right 1.712541e-03	k: 2352	n:1430000
FAM116A   1430000 perm   1118 sec   (1279 perm/sec)   p_kst 1.644755e-03   p_cons 2.783077e-02   p_joint 7.629371e-04

Joint ci ratio: 1.181473e-01	ci left: 7.187499e-04	ci right 8.096663e-04	k: 1099	n:1440000
Cons ci ratio: 1.930526e-02	ci left: 2.756665e-02	ci right 2.810470e-02	k: 40082	n:1440000
KS ci ratio: 8.052328e-02	ci left: 1.576881e-03	ci right 1.709858e-03	k: 2365	n:1440000
FAM116A   1440000 perm   1131 sec   (1273 perm/sec)   p_kst 1.642361e-03   p_cons 2.783472e-02   p_joint 7.631944e-04

Joint ci ratio: 1.178798e-01	ci left: 7.171394e-04	ci right 8.076324e-04	k: 1104	n:1450000
Cons ci ratio: 1.923425e-02	ci left: 2.757969e-02	ci right 2.811599e-02	k: 40378	n:1450000
KS ci ratio: 8.026928e-02	ci left: 1.576143e-03	ci right 1.708619e-03	k: 2380	n:1450000
FAM116A   1450000 perm   1144 sec   (1267 perm/sec)   p_kst 1.641379e-03   p_cons 2.784690e-02   p_joint 7.613793e-04

Joint ci ratio: 1.174026e-01	ci left: 7.182105e-04	ci right 8.084464e-04	k: 1113	n:1460000
Cons ci ratio: 1.916838e-02	ci left: 2.758028e-02	ci right 2.811474e-02	k: 40656	n:1460000
KS ci ratio: 7.996753e-02	ci left: 1.577429e-03	ci right 1.709492e-03	k: 2398	n:1460000
FAM116A   1460000 perm   1158 sec   (1261 perm/sec)   p_kst 1.642466e-03   p_cons 2.784658e-02   p_joint 7.623288e-04

Joint ci ratio: 1.172450e-01	ci left: 7.153056e-04	ci right 8.050475e-04	k: 1116	n:1470000
Cons ci ratio: 1.909815e-02	ci left: 2.759509e-02	ci right 2.812786e-02	k: 40955	n:1470000
KS ci ratio: 7.980156e-02	ci left: 1.573365e-03	ci right 1.704801e-03	k: 2408	n:1470000
FAM116A   1470000 perm   1171 sec   (1255 perm/sec)   p_kst 1.638095e-03   p_cons 2.786054e-02   p_joint 7.591837e-04

Joint ci ratio: 1.168274e-01	ci left: 7.157196e-04	ci right 8.051716e-04	k: 1124	n:1480000
Cons ci ratio: 1.903248e-02	ci left: 2.759895e-02	ci right 2.812993e-02	k: 41238	n:1480000
KS ci ratio: 7.945586e-02	ci left: 1.576641e-03	ci right 1.707754e-03	k: 2429	n:1480000
FAM116A   1480000 perm   1185 sec   (1249 perm/sec)   p_kst 1.641216e-03   p_cons 2.786351e-02   p_joint 7.594595e-04

Joint ci ratio: 1.162090e-01	ci left: 7.187352e-04	ci right 8.080560e-04	k: 1136	n:1490000
Cons ci ratio: 1.897336e-02	ci left: 2.758605e-02	ci right 2.811512e-02	k: 41496	n:1490000
KS ci ratio: 7.908231e-02	ci left: 1.581190e-03	ci right 1.712035e-03	k: 2452	n:1490000
FAM116A   1490000 perm   1199 sec   (1243 perm/sec)   p_kst 1.645638e-03   p_cons 2.784966e-02   p_joint 7.624161e-04

Joint ci ratio: 1.167760e-01	ci left: 7.068237e-04	ci right 7.951223e-04	k: 1125	n:1500000
Cons ci ratio: 1.890756e-02	ci left: 2.759390e-02	ci right 2.812126e-02	k: 41785	n:1500000
KS ci ratio: 7.884166e-02	ci left: 1.580451e-03	ci right 1.710818e-03	k: 2467	n:1500000
FAM116A   1500000 perm   1212 sec   (1237 perm/sec)   p_kst 1.644667e-03   p_cons 2.785667e-02   p_joint 7.500000e-04

Joint ci ratio: 1.168802e-01	ci left: 7.008568e-04	ci right 7.884935e-04	k: 1123	n:1510000
Cons ci ratio: 1.884729e-02	ci left: 2.758780e-02	ci right 2.811335e-02	k: 42053	n:1510000
KS ci ratio: 7.861905e-02	ci left: 1.579074e-03	ci right 1.708943e-03	k: 2481	n:1510000
FAM116A   1510000 perm   1225 sec   (1232 perm/sec)   p_kst 1.643046e-03   p_cons 2.784967e-02   p_joint 7.437086e-04

Joint ci ratio: 1.175099e-01	ci left: 6.885824e-04	ci right 7.751803e-04	k: 1111	n:1520000
Cons ci ratio: 1.878439e-02	ci left: 2.759095e-02	ci right 2.811479e-02	k: 42335	n:1520000
KS ci ratio: 7.836688e-02	ci left: 1.579005e-03	ci right 1.708432e-03	k: 2497	n:1520000
FAM116A   1520000 perm   1239 sec   (1227 perm/sec)   p_kst 1.642763e-03   p_cons 2.785197e-02   p_joint 7.309211e-04

Joint ci ratio: 1.184195e-01	ci left: 6.732983e-04	ci right 7.586754e-04	k: 1094	n:1530000
Cons ci ratio: 1.872008e-02	ci left: 2.759993e-02	ci right 2.812212e-02	k: 42626	n:1530000
KS ci ratio: 7.813268e-02	ci left: 1.578296e-03	ci right 1.707262e-03	k: 2512	n:1530000
FAM116A   1530000 perm   1253 sec   (1221 perm/sec)   p_kst 1.641830e-03   p_cons 2.786013e-02   p_joint 7.150327e-04

Joint ci ratio: 1.182040e-01	ci left: 6.714467e-04	ci right 7.564232e-04	k: 1098	n:1540000
Cons ci ratio: 1.865666e-02	ci left: 2.760814e-02	ci right 2.812870e-02	k: 42916	n:1540000
KS ci ratio: 7.797785e-02	ci left: 1.574414e-03	ci right 1.702796e-03	k: 2522	n:1540000
FAM116A   1540000 perm   1267 sec   (1216 perm/sec)   p_kst 1.637662e-03   p_cons 2.786753e-02   p_joint 7.129870e-04

Joint ci ratio: 1.179361e-01	ci left: 6.702453e-04	ci right 7.548641e-04	k: 1103	n:1550000
Cons ci ratio: 1.859166e-02	ci left: 2.762267e-02	ci right 2.814167e-02	k: 43216	n:1550000
KS ci ratio: 7.774711e-02	ci left: 1.573746e-03	ci right 1.701676e-03	k: 2537	n:1550000
FAM116A   1550000 perm   1281 sec   (1210 perm/sec)   p_kst 1.636774e-03   p_cons 2.788129e-02   p_joint 7.116129e-04

Joint ci ratio: 1.174054e-01	ci left: 6.721705e-04	ci right 7.566240e-04	k: 1113	n:1560000
Cons ci ratio: 1.853303e-02	ci left: 2.762043e-02	ci right 2.813774e-02	k: 43490	n:1560000
KS ci ratio: 7.744249e-02	ci left: 1.576230e-03	ci right 1.703837e-03	k: 2557	n:1560000
FAM116A   1560000 perm   1295 sec   (1205 perm/sec)   p_kst 1.639103e-03   p_cons 2.787821e-02   p_joint 7.134615e-04

Joint ci ratio: 1.170906e-01	ci left: 6.715987e-04	ci right 7.557385e-04	k: 1119	n:1570000
Cons ci ratio: 1.847843e-02	ci left: 2.760807e-02	ci right 2.812361e-02	k: 43748	n:1570000
KS ci ratio: 7.715641e-02	ci left: 1.578058e-03	ci right 1.705320e-03	k: 2576	n:1570000
FAM116A   1570000 perm   1309 sec   (1200 perm/sec)   p_kst 1.640764e-03   p_cons 2.786497e-02   p_joint 7.127389e-04

Joint ci ratio: 1.166229e-01	ci left: 6.728778e-04	ci right 7.568179e-04	k: 1128	n:1580000
Cons ci ratio: 1.842775e-02	ci left: 2.758579e-02	ci right 2.809948e-02	k: 43990	n:1580000
KS ci ratio: 7.688831e-02	ci left: 1.579243e-03	ci right 1.706139e-03	k: 2594	n:1580000
FAM116A   1580000 perm   1323 sec   (1194 perm/sec)   p_kst 1.641772e-03   p_cons 2.784177e-02   p_joint 7.139241e-04

Joint ci ratio: 1.162630e-01	ci left: 6.729202e-04	ci right 7.565887e-04	k: 1135	n:1590000
Cons ci ratio: 1.837087e-02	ci left: 2.758320e-02	ci right 2.809525e-02	k: 44263	n:1590000
KS ci ratio: 7.669652e-02	ci left: 1.577330e-03	ci right 1.703742e-03	k: 2607	n:1590000
FAM116A   1590000 perm   1337 sec   (1189 perm/sec)   p_kst 1.639623e-03   p_cons 2.783836e-02   p_joint 7.138365e-04

Joint ci ratio: 1.164172e-01	ci left: 6.668938e-04	ci right 7.499306e-04	k: 1132	n:1600000
Cons ci ratio: 1.831070e-02	ci left: 2.759185e-02	ci right 2.810236e-02	k: 44554	n:1600000
KS ci ratio: 7.637493e-02	ci left: 1.580959e-03	ci right 1.707106e-03	k: 2629	n:1600000
FAM116A   1600000 perm   1351 sec   (1184 perm/sec)   p_kst 1.643125e-03   p_cons 2.784625e-02   p_joint 7.075000e-04

Joint ci ratio: 1.163148e-01	ci left: 6.639577e-04	ci right 7.465511e-04	k: 1134	n:1610000
Cons ci ratio: 1.824611e-02	ci left: 2.761523e-02	ci right 2.812435e-02	k: 44869	n:1610000
KS ci ratio: 7.617252e-02	ci left: 1.579669e-03	ci right 1.705365e-03	k: 2643	n:1610000
FAM116A   1610000 perm   1366 sec   (1179 perm/sec)   p_kst 1.641615e-03   p_cons 2.786894e-02   p_joint 7.043478e-04

Joint ci ratio: 1.164177e-01	ci left: 6.586604e-04	ci right 7.406724e-04	k: 1132	n:1620000
Cons ci ratio: 1.818633e-02	ci left: 2.762604e-02	ci right 2.813367e-02	k: 45164	n:1620000
KS ci ratio: 7.598602e-02	ci left: 1.577790e-03	ci right 1.703015e-03	k: 2656	n:1620000
FAM116A   1620000 perm   1380 sec   (1174 perm/sec)   p_kst 1.639506e-03   p_cons 2.787901e-02   p_joint 6.987654e-04

Joint ci ratio: 1.164180e-01	ci left: 6.546195e-04	ci right 7.361285e-04	k: 1132	n:1630000
Cons ci ratio: 1.813431e-02	ci left: 2.761534e-02	ci right 2.812131e-02	k: 45424	n:1630000
KS ci ratio: 7.577247e-02	ci left: 1.577138e-03	ci right 1.701944e-03	k: 2671	n:1630000
FAM116A   1630000 perm   1395 sec   (1168 perm/sec)   p_kst 1.638650e-03   p_cons 2.786748e-02   p_joint 6.944785e-04

Joint ci ratio: 1.161110e-01	ci left: 6.541800e-04	ci right 7.354048e-04	k: 1138	n:1640000
Cons ci ratio: 1.807847e-02	ci left: 2.761752e-02	ci right 2.812195e-02	k: 45705	n:1640000
KS ci ratio: 7.554663e-02	ci left: 1.577093e-03	ci right 1.701507e-03	k: 2687	n:1640000
FAM116A   1640000 perm   1410 sec   (1163 perm/sec)   p_kst 1.638415e-03   p_cons 2.786890e-02   p_joint 6.939024e-04

Joint ci ratio: 1.156549e-01	ci left: 6.555118e-04	ci right 7.365604e-04	k: 1147	n:1650000
Cons ci ratio: 1.802798e-02	ci left: 2.760519e-02	ci right 2.810798e-02	k: 45962	n:1650000
KS ci ratio: 7.535071e-02	ci left: 1.575859e-03	ci right 1.699840e-03	k: 2701	n:1650000
FAM116A   1650000 perm   1425 sec   (1158 perm/sec)   p_kst 1.636970e-03   p_cons 2.785576e-02   p_joint 6.951515e-04

Joint ci ratio: 1.154039e-01	ci left: 6.544879e-04	ci right 7.352223e-04	k: 1152	n:1660000
Cons ci ratio: 1.797151e-02	ci left: 2.761221e-02	ci right 2.811353e-02	k: 46251	n:1660000
KS ci ratio: 7.517018e-02	ci left: 1.574050e-03	ci right 1.697579e-03	k: 2714	n:1660000
FAM116A   1660000 perm   1440 sec   (1153 perm/sec)   p_kst 1.634940e-03   p_cons 2.786205e-02   p_joint 6.939759e-04

Joint ci ratio: 1.108772e-01	ci left: 7.064287e-04	ci right 7.899291e-04	k: 1248	n:1670000
Cons ci ratio: 1.864516e-02	ci left: 2.554517e-02	ci right 2.602653e-02	k: 43061	n:1670000
KS ci ratio: 7.492219e-02	ci left: 1.575201e-03	ci right 1.698394e-03	k: 2732	n:1670000
FAM116A   1670000 perm   1455 sec   (1148 perm/sec)   p_kst 1.635928e-03   p_cons 2.578503e-02   p_joint 7.473054e-04

Joint ci ratio: 1.110109e-01	ci left: 7.004875e-04	ci right 7.833920e-04	k: 1245	n:1680000
Cons ci ratio: 1.859528e-02	ci left: 2.553057e-02	ci right 2.601035e-02	k: 43293	n:1680000
KS ci ratio: 7.460876e-02	ci left: 1.579259e-03	ci right 1.702231e-03	k: 2755	n:1680000
FAM116A   1680000 perm   1469 sec   (1143 perm/sec)   p_kst 1.639881e-03   p_cons 2.576964e-02   p_joint 7.410714e-04

Joint ci ratio: 1.117314e-01	ci left: 6.871386e-04	ci right 7.690258e-04	k: 1229	n:1690000
Cons ci ratio: 1.854405e-02	ci left: 2.552085e-02	ci right 2.599912e-02	k: 43533	n:1690000
KS ci ratio: 7.433943e-02	ci left: 1.581528e-03	ci right 1.704213e-03	k: 2775	n:1690000
FAM116A   1690000 perm   1484 sec   (1139 perm/sec)   p_kst 1.642012e-03   p_cons 2.575917e-02   p_joint 7.272189e-04

Joint ci ratio: 1.122811e-01	ci left: 6.762354e-04	ci right 7.572459e-04	k: 1217	n:1700000
Cons ci ratio: 1.849368e-02	ci left: 2.551008e-02	ci right 2.598683e-02	k: 43771	n:1700000
KS ci ratio: 7.408627e-02	ci left: 1.583194e-03	ci right 1.705572e-03	k: 2794	n:1700000
FAM116A   1700000 perm   1500 sec   (1134 perm/sec)   p_kst 1.643529e-03   p_cons 2.574765e-02   p_joint 7.158824e-04

Joint ci ratio: 1.136912e-01	ci left: 6.552323e-04	ci right 7.347786e-04	k: 1187	n:1710000
Cons ci ratio: 1.843447e-02	ci left: 2.552447e-02	ci right 2.599995e-02	k: 44052	n:1710000
KS ci ratio: 7.388830e-02	ci left: 1.582546e-03	ci right 1.704532e-03	k: 2809	n:1710000
FAM116A   1710000 perm   1515 sec   (1129 perm/sec)   p_kst 1.642690e-03   p_cons 2.576140e-02   p_joint 6.941520e-04

Joint ci ratio: 1.132629e-01	ci left: 6.565069e-04	ci right 7.358876e-04	k: 1196	n:1720000
Cons ci ratio: 1.838158e-02	ci left: 2.552306e-02	ci right 2.599714e-02	k: 44306	n:1720000
KS ci ratio: 7.367884e-02	ci left: 1.582475e-03	ci right 1.704096e-03	k: 2825	n:1720000
FAM116A   1720000 perm   1530 sec   (1124 perm/sec)   p_kst 1.642442e-03   p_cons 2.575930e-02   p_joint 6.953488e-04

Joint ci ratio: 1.045001e-01	ci left: 7.702389e-04	ci right 8.557239e-04	k: 1405	n:1730000
Cons ci ratio: 1.833357e-02	ci left: 2.550959e-02	ci right 2.598217e-02	k: 44539	n:1730000
KS ci ratio: 7.344528e-02	ci left: 1.583541e-03	ci right 1.704842e-03	k: 2843	n:1730000
FAM116A   1730000 perm   1545 sec   (1120 perm/sec)   p_kst 1.643353e-03   p_cons 2.574509e-02   p_joint 8.121387e-04

Joint ci ratio: 1.045376e-01	ci left: 7.652524e-04	ci right 8.502163e-04	k: 1404	n:1740000
Cons ci ratio: 1.828112e-02	ci left: 2.550944e-02	ci right 2.598065e-02	k: 44795	n:1740000
KS ci ratio: 7.323956e-02	ci left: 1.583467e-03	ci right 1.704408e-03	k: 2859	n:1740000
FAM116A   1740000 perm   1560 sec   (1115 perm/sec)   p_kst 1.643103e-03   p_cons 2.574425e-02   p_joint 8.068966e-04

Joint ci ratio: 1.054812e-01	ci left: 7.469687e-04	ci right 8.306976e-04	k: 1379	n:1750000
Cons ci ratio: 1.823264e-02	ci left: 2.549962e-02	ci right 2.596938e-02	k: 45034	n:1750000
KS ci ratio: 7.304828e-02	ci left: 1.582834e-03	ci right 1.703397e-03	k: 2874	n:1750000
FAM116A   1750000 perm   1577 sec   (1109 perm/sec)   p_kst 1.642286e-03   p_cons 2.573371e-02   p_joint 7.880000e-04

Joint ci ratio: 1.052147e-01	ci left: 7.465970e-04	ci right 8.300598e-04	k: 1386	n:1760000
Cons ci ratio: 1.818146e-02	ci left: 2.549840e-02	ci right 2.596680e-02	k: 45288	n:1760000
KS ci ratio: 7.284587e-02	ci left: 1.582765e-03	ci right 1.702975e-03	k: 2890	n:1760000
FAM116A   1760000 perm   1593 sec   (1105 perm/sec)   p_kst 1.642045e-03   p_cons 2.573182e-02   p_joint 7.875000e-04

Joint ci ratio: 1.045755e-01	ci left: 7.517316e-04	ci right 8.352265e-04	k: 1403	n:1770000
Cons ci ratio: 1.813070e-02	ci left: 2.549719e-02	ci right 2.596425e-02	k: 45542	n:1770000
KS ci ratio: 7.257015e-02	ci left: 1.586027e-03	ci right 1.706009e-03	k: 2912	n:1770000
FAM116A   1770000 perm   1609 sec   (1100 perm/sec)   p_kst 1.645198e-03   p_cons 2.572994e-02   p_joint 7.926554e-04

Joint ci ratio: 1.042419e-01	ci left: 7.524325e-04	ci right 8.357223e-04	k: 1412	n:1780000
Cons ci ratio: 1.807248e-02	ci left: 2.551781e-02	ci right 2.598374e-02	k: 45835	n:1780000
KS ci ratio: 7.235931e-02	ci left: 1.586494e-03	ci right 1.706148e-03	k: 2929	n:1780000
FAM116A   1780000 perm   1624 sec   (1096 perm/sec)   p_kst 1.645506e-03   p_cons 2.575000e-02   p_joint 7.932584e-04

Joint ci ratio: 1.039115e-01	ci left: 7.531261e-04	ci right 8.362122e-04	k: 1421	n:1790000
Cons ci ratio: 1.801842e-02	ci left: 2.552819e-02	ci right 2.599290e-02	k: 46110	n:1790000
KS ci ratio: 7.211353e-02	ci left: 1.588602e-03	ci right 1.707991e-03	k: 2949	n:1790000
FAM116A   1790000 perm   1639 sec   (1092 perm/sec)   p_kst 1.647486e-03   p_cons 2.575978e-02   p_joint 7.938547e-04

Joint ci ratio: 1.038387e-01	ci left: 7.500242e-04	ci right 8.327067e-04	k: 1423	n:1800000
Cons ci ratio: 1.797319e-02	ci left: 2.551523e-02	ci right 2.597852e-02	k: 46343	n:1800000
KS ci ratio: 7.189450e-02	ci left: 1.589597e-03	ci right 1.708683e-03	k: 2967	n:1800000
FAM116A   1800000 perm   1655 sec   (1088 perm/sec)   p_kst 1.648333e-03   p_cons 2.574611e-02   p_joint 7.905556e-04

Joint ci ratio: 1.049135e-01	ci left: 7.302762e-04	ci right 8.116663e-04	k: 1394	n:1810000
Cons ci ratio: 1.792455e-02	ci left: 2.551286e-02	ci right 2.597485e-02	k: 46595	n:1810000
KS ci ratio: 7.168947e-02	ci left: 1.590038e-03	ci right 1.708803e-03	k: 2984	n:1810000
FAM116A   1810000 perm   1670 sec   (1084 perm/sec)   p_kst 1.648619e-03   p_cons 2.574309e-02   p_joint 7.701657e-04

Joint ci ratio: 1.046513e-01	ci left: 7.300090e-04	ci right 8.111535e-04	k: 1401	n:1820000
Cons ci ratio: 1.787278e-02	ci left: 2.552037e-02	ci right 2.598114e-02	k: 46865	n:1820000
KS ci ratio: 7.154589e-02	ci left: 1.587777e-03	ci right 1.706126e-03	k: 2996	n:1820000
FAM116A   1820000 perm   1686 sec   (1080 perm/sec)   p_kst 1.646154e-03   p_cons 2.575000e-02   p_joint 7.697802e-04

Joint ci ratio: 1.043910e-01	ci left: 7.297451e-04	ci right 8.106461e-04	k: 1408	n:1830000
Cons ci ratio: 1.781854e-02	ci left: 2.553596e-02	ci right 2.599560e-02	k: 47150	n:1830000
KS ci ratio: 7.136755e-02	ci left: 1.587151e-03	ci right 1.705146e-03	k: 3011	n:1830000
FAM116A   1830000 perm   1702 sec   (1075 perm/sec)   p_kst 1.645355e-03   p_cons 2.576503e-02   p_joint 7.693989e-04

Joint ci ratio: 1.040959e-01	ci left: 7.300135e-04	ci right 8.107016e-04	k: 1416	n:1840000
Cons ci ratio: 1.776788e-02	ci left: 2.554272e-02	ci right 2.600116e-02	k: 47419	n:1840000
KS ci ratio: 7.116698e-02	ci left: 1.587599e-03	ci right 1.705282e-03	k: 3028	n:1840000
FAM116A   1840000 perm   1718 sec   (1071 perm/sec)   p_kst 1.645652e-03   p_cons 2.577120e-02   p_joint 7.695652e-04

Joint ci ratio: 1.038398e-01	ci left: 7.297529e-04	ci right 8.102015e-04	k: 1423	n:1850000
Cons ci ratio: 1.771402e-02	ci left: 2.555964e-02	ci right 2.601698e-02	k: 47707	n:1850000
KS ci ratio: 7.096810e-02	ci left: 1.588044e-03	ci right 1.705417e-03	k: 3045	n:1850000
FAM116A   1850000 perm   1734 sec   (1067 perm/sec)   p_kst 1.645946e-03   p_cons 2.578757e-02   p_joint 7.691892e-04

Joint ci ratio: 1.035855e-01	ci left: 7.294953e-04	ci right 8.097066e-04	k: 1430	n:1860000
Cons ci ratio: 1.766556e-02	ci left: 2.556246e-02	ci right 2.601859e-02	k: 47969	n:1860000
KS ci ratio: 7.080562e-02	ci left: 1.586899e-03	ci right 1.703908e-03	k: 3059	n:1860000
FAM116A   1860000 perm   1750 sec   (1063 perm/sec)   p_kst 1.644624e-03   p_cons 2.578978e-02   p_joint 7.688172e-04

Joint ci ratio: 1.032254e-01	ci left: 7.308036e-04	ci right 8.108625e-04	k: 1440	n:1870000
Cons ci ratio: 1.761599e-02	ci left: 2.556951e-02	ci right 2.602447e-02	k: 48239	n:1870000
KS ci ratio: 7.058676e-02	ci left: 1.588394e-03	ci right 1.705137e-03	k: 3078	n:1870000
FAM116A   1870000 perm   1766 sec   (1059 perm/sec)   p_kst 1.645989e-03   p_cons 2.579626e-02   p_joint 7.700535e-04

Joint ci ratio: 1.027274e-01	ci left: 7.341714e-04	ci right 8.141878e-04	k: 1454	n:1880000
Cons ci ratio: 1.756833e-02	ci left: 2.557225e-02	ci right 2.602602e-02	k: 48501	n:1880000
KS ci ratio: 7.038131e-02	ci left: 1.589351e-03	ci right 1.705810e-03	k: 3096	n:1880000
FAM116A   1880000 perm   1782 sec   (1055 perm/sec)   p_kst 1.646809e-03   p_cons 2.579840e-02   p_joint 7.734043e-04

Joint ci ratio: 1.025514e-01	ci left: 7.328645e-04	ci right 8.125934e-04	k: 1459	n:1890000
Cons ci ratio: 1.752216e-02	ci left: 2.557181e-02	ci right 2.602436e-02	k: 48757	n:1890000
KS ci ratio: 7.026808e-02	ci left: 1.586139e-03	ci right 1.702169e-03	k: 3106	n:1890000
FAM116A   1890000 perm   1799 sec   (1051 perm/sec)   p_kst 1.643386e-03   p_cons 2.579735e-02   p_joint 7.719577e-04

Joint ci ratio: 1.033337e-01	ci left: 7.177262e-04	ci right 7.964400e-04	k: 1437	n:1900000
Cons ci ratio: 1.747561e-02	ci left: 2.557346e-02	ci right 2.602483e-02	k: 49017	n:1900000
KS ci ratio: 7.012159e-02	ci left: 1.584513e-03	ci right 1.700172e-03	k: 3119	n:1900000
FAM116A   1900000 perm   1816 sec   (1047 perm/sec)   p_kst 1.641579e-03   p_cons 2.579842e-02   p_joint 7.563158e-04

Joint ci ratio: 1.031189e-01	ci left: 7.170287e-04	ci right 7.954926e-04	k: 1443	n:1910000
Cons ci ratio: 1.742726e-02	ci left: 2.558136e-02	ci right 2.603160e-02	k: 49289	n:1910000
KS ci ratio: 6.993132e-02	ci left: 1.584962e-03	ci right 1.700327e-03	k: 3136	n:1910000
FAM116A   1910000 perm   1832 sec   (1043 perm/sec)   p_kst 1.641885e-03   p_cons 2.580576e-02   p_joint 7.554974e-04

Joint ci ratio: 1.029053e-01	ci left: 7.163386e-04	ci right 7.945549e-04	k: 1449	n:1920000
Cons ci ratio: 1.738489e-02	ci left: 2.557309e-02	ci right 2.602209e-02	k: 49530	n:1920000
KS ci ratio: 6.975367e-02	ci left: 1.584895e-03	ci right 1.699950e-03	k: 3152	n:1920000
FAM116A   1920000 perm   1849 sec   (1038 perm/sec)   p_kst 1.641667e-03   p_cons 2.579688e-02   p_joint 7.546875e-04

Joint ci ratio: 1.064544e-01	ci left: 6.646916e-04	ci right 7.399285e-04	k: 1354	n:1930000
Cons ci ratio: 1.734927e-02	ci left: 2.554634e-02	ci right 2.599394e-02	k: 49735	n:1930000
KS ci ratio: 6.955539e-02	ci left: 1.585847e-03	ci right 1.700631e-03	k: 3170	n:1930000
FAM116A   1930000 perm   1866 sec   (1035 perm/sec)   p_kst 1.642487e-03   p_cons 2.576943e-02   p_joint 7.015544e-04

Joint ci ratio: 1.063369e-01	ci left: 6.627706e-04	ci right 7.377020e-04	k: 1357	n:1940000
Cons ci ratio: 1.730480e-02	ci left: 2.554605e-02	ci right 2.599248e-02	k: 49991	n:1940000
KS ci ratio: 6.932613e-02	ci left: 1.588309e-03	ci right 1.702877e-03	k: 3191	n:1940000
FAM116A   1940000 perm   1882 sec   (1031 perm/sec)   p_kst 1.644845e-03   p_cons 2.576856e-02   p_joint 6.994845e-04

Joint ci ratio: 1.061807e-01	ci left: 6.613685e-04	ci right 7.360247e-04	k: 1361	n:1950000
Cons ci ratio: 1.726120e-02	ci left: 2.554423e-02	ci right 2.598949e-02	k: 50244	n:1950000
KS ci ratio: 6.919626e-02	ci left: 1.586211e-03	ci right 1.700405e-03	k: 3203	n:1950000
FAM116A   1950000 perm   1899 sec   (1027 perm/sec)   p_kst 1.642564e-03   p_cons 2.576615e-02   p_joint 6.979487e-04

Joint ci ratio: 1.057544e-01	ci left: 6.634577e-04	ci right 7.380303e-04	k: 1372	n:1960000
Cons ci ratio: 1.721775e-02	ci left: 2.554293e-02	ci right 2.598704e-02	k: 50498	n:1960000
KS ci ratio: 6.891703e-02	ci left: 1.591155e-03	ci right 1.705224e-03	k: 3229	n:1960000
FAM116A   1960000 perm   1916 sec   (1023 perm/sec)   p_kst 1.647449e-03   p_cons 2.576429e-02   p_joint 7.000000e-04

Joint ci ratio: 1.053713e-01	ci left: 6.650321e-04	ci right 7.394941e-04	k: 1382	n:1970000
Cons ci ratio: 1.717428e-02	ci left: 2.554266e-02	ci right 2.598564e-02	k: 50754	n:1970000
KS ci ratio: 6.868342e-02	ci left: 1.594053e-03	ci right 1.707927e-03	k: 3251	n:1970000
FAM116A   1970000 perm   1933 sec   (1019 perm/sec)   p_kst 1.650254e-03   p_cons 2.576345e-02   p_joint 7.015228e-04

Joint ci ratio: 1.052953e-01	ci left: 6.626568e-04	ci right 7.367960e-04	k: 1384	n:1980000
Cons ci ratio: 1.713166e-02	ci left: 2.554089e-02	ci right 2.598272e-02	k: 51007	n:1980000
KS ci ratio: 6.856765e-02	ci left: 1.591463e-03	ci right 1.704952e-03	k: 3262	n:1980000
FAM116A   1980000 perm   1950 sec   (1015 perm/sec)   p_kst 1.647475e-03   p_cons 2.576111e-02   p_joint 6.989899e-04

Joint ci ratio: 1.049548e-01	ci left: 6.637305e-04	ci right 7.377350e-04	k: 1393	n:1990000
Cons ci ratio: 1.708200e-02	ci left: 2.556065e-02	ci right 2.600153e-02	k: 51303	n:1990000
KS ci ratio: 6.845246e-02	ci left: 1.588898e-03	ci right 1.702007e-03	k: 3273	n:1990000
FAM116A   1990000 perm   1967 sec   (1011 perm/sec)   p_kst 1.644724e-03   p_cons 2.578040e-02   p_joint 7.000000e-04

Joint ci ratio: 1.062989e-01	ci left: 6.433738e-04	ci right 7.160846e-04	k: 1358	n:2000000
Cons ci ratio: 1.703870e-02	ci left: 2.556279e-02	ci right 2.600258e-02	k: 51564	n:2000000
KS ci ratio: 6.829621e-02	ci left: 1.588326e-03	ci right 1.701125e-03	k: 3288	n:2000000
FAM116A   2000000 perm   1985 sec   (1008 perm/sec)   p_kst 1.644000e-03   p_cons 2.578200e-02   p_joint 6.790000e-04

Joint ci ratio: 1.060650e-01	ci left: 6.430788e-04	ci right 7.155863e-04	k: 1364	n:2010000
Cons ci ratio: 1.700347e-02	ci left: 2.554212e-02	ci right 2.598064e-02	k: 51779	n:2010000
KS ci ratio: 6.811007e-02	ci left: 1.589226e-03	ci right 1.701770e-03	k: 3306	n:2010000
FAM116A   2010000 perm   2004 sec   (1003 perm/sec)   p_kst 1.644776e-03   p_cons 2.576070e-02   p_joint 6.786070e-04

Joint ci ratio: 1.059100e-01	ci left: 6.418229e-04	ci right 7.140765e-04	k: 1368	n:2020000
Cons ci ratio: 1.695960e-02	ci left: 2.554779e-02	ci right 2.598526e-02	k: 52047	n:2020000
KS ci ratio: 6.801770e-02	ci left: 1.585738e-03	ci right 1.697877e-03	k: 3315	n:2020000
FAM116A   2020000 perm   2022 sec   (999 perm/sec)   p_kst 1.641089e-03   p_cons 2.576584e-02   p_joint 6.772277e-04

Joint ci ratio: 1.056787e-01	ci left: 6.415386e-04	ci right 7.135927e-04	k: 1374	n:2030000
Cons ci ratio: 1.691987e-02	ci left: 2.554211e-02	ci right 2.597845e-02	k: 52292	n:2030000
KS ci ratio: 6.790525e-02	ci left: 1.583253e-03	ci right 1.695023e-03	k: 3326	n:2030000
FAM116A   2030000 perm   2039 sec   (995 perm/sec)   p_kst 1.638424e-03   p_cons 2.575961e-02   p_joint 6.768473e-04

Joint ci ratio: 1.054107e-01	ci left: 6.417346e-04	ci right 7.136166e-04	k: 1381	n:2040000
Cons ci ratio: 1.688093e-02	ci left: 2.553503e-02	ci right 2.597024e-02	k: 52534	n:2040000
KS ci ratio: 6.777303e-02	ci left: 1.581757e-03	ci right 1.693195e-03	k: 3339	n:2040000
FAM116A   2040000 perm   2057 sec   (992 perm/sec)   p_kst 1.636765e-03   p_cons 2.575196e-02   p_joint 6.769608e-04

Joint ci ratio: 1.051448e-01	ci left: 6.419290e-04	ci right 7.136401e-04	k: 1388	n:2050000
Cons ci ratio: 1.684077e-02	ci left: 2.553239e-02	ci right 2.596651e-02	k: 52785	n:2050000
KS ci ratio: 6.753071e-02	ci left: 1.585550e-03	ci right 1.696841e-03	k: 3363	n:2050000
FAM116A   2050000 perm   2075 sec   (988 perm/sec)   p_kst 1.640488e-03   p_cons 2.574878e-02   p_joint 6.770732e-04

Joint ci ratio: 1.071715e-01	ci left: 6.142398e-04	ci right 6.842637e-04	k: 1336	n:2060000
Cons ci ratio: 1.680350e-02	ci left: 2.552205e-02	ci right 2.595502e-02	k: 53020	n:2060000
KS ci ratio: 6.734077e-02	ci left: 1.586921e-03	ci right 1.697983e-03	k: 3382	n:2060000
FAM116A   2060000 perm   2094 sec   (984 perm/sec)   p_kst 1.641748e-03   p_cons 2.573786e-02   p_joint 6.485437e-04

Joint ci ratio: 1.068523e-01	ci left: 6.150337e-04	ci right 6.849262e-04	k: 1344	n:2070000
Cons ci ratio: 1.676535e-02	ci left: 2.551517e-02	ci right 2.594703e-02	k: 53262	n:2070000
KS ci ratio: 6.713265e-02	ci left: 1.589229e-03	ci right 1.700095e-03	k: 3403	n:2070000
FAM116A   2070000 perm   2111 sec   (980 perm/sec)   p_kst 1.643961e-03   p_cons 2.573043e-02   p_joint 6.492754e-04

Joint ci ratio: 1.064965e-01	ci left: 6.162883e-04	ci right 6.860756e-04	k: 1353	n:2080000
Cons ci ratio: 1.672377e-02	ci left: 2.551937e-02	ci right 2.595022e-02	k: 53527	n:2080000
KS ci ratio: 6.699506e-02	ci left: 1.588207e-03	ci right 1.698765e-03	k: 3417	n:2080000
FAM116A   2080000 perm   2129 sec   (977 perm/sec)   p_kst 1.642788e-03   p_cons 2.573413e-02   p_joint 6.504808e-04

Joint ci ratio: 1.061442e-01	ci left: 6.175313e-04	ci right 6.872136e-04	k: 1362	n:2090000
Cons ci ratio: 1.668552e-02	ci left: 2.551448e-02	ci right 2.594425e-02	k: 53773	n:2090000
KS ci ratio: 6.686808e-02	ci left: 1.586723e-03	ci right 1.696961e-03	k: 3430	n:2090000
FAM116A   2090000 perm   2148 sec   (973 perm/sec)   p_kst 1.641148e-03   p_cons 2.572871e-02   p_joint 6.516746e-04

Joint ci ratio: 1.058341e-01	ci left: 6.182993e-04	ci right 6.878516e-04	k: 1370	n:2100000
Cons ci ratio: 1.665085e-02	ci left: 2.549968e-02	ci right 2.592830e-02	k: 53998	n:2100000
KS ci ratio: 6.672241e-02	ci left: 1.586191e-03	ci right 1.696143e-03	k: 3445	n:2100000
FAM116A   2100000 perm   2166 sec   (970 perm/sec)   p_kst 1.640476e-03   p_cons 2.571333e-02   p_joint 6.523810e-04

Joint ci ratio: 1.056032e-01	ci left: 6.181373e-04	ci right 6.875104e-04	k: 1376	n:2110000
Cons ci ratio: 1.661215e-02	ci left: 2.549776e-02	ci right 2.592534e-02	k: 54250	n:2110000
KS ci ratio: 6.656805e-02	ci left: 1.586130e-03	ci right 1.695814e-03	k: 3461	n:2110000
FAM116A   2110000 perm   2184 sec   (966 perm/sec)   p_kst 1.640284e-03   p_cons 2.571090e-02   p_joint 6.521327e-04

Joint ci ratio: 1.059892e-01	ci left: 6.106293e-04	ci right 6.794259e-04	k: 1366	n:2120000
Cons ci ratio: 1.657529e-02	ci left: 2.549116e-02	ci right 2.591768e-02	k: 54492	n:2120000
KS ci ratio: 6.642433e-02	ci left: 1.585606e-03	ci right 1.695008e-03	k: 3476	n:2120000
FAM116A   2120000 perm   2202 sec   (963 perm/sec)   p_kst 1.639623e-03   p_cons 2.570377e-02   p_joint 6.443396e-04

Joint ci ratio: 1.056036e-01	ci left: 6.123331e-04	ci right 6.810551e-04	k: 1376	n:2130000
Cons ci ratio: 1.653448e-02	ci left: 2.549726e-02	ci right 2.592281e-02	k: 54761	n:2130000
KS ci ratio: 6.625303e-02	ci left: 1.586473e-03	ci right 1.695641e-03	k: 3494	n:2130000
FAM116A   2130000 perm   2220 sec   (959 perm/sec)   p_kst 1.640376e-03   p_cons 2.570939e-02   p_joint 6.460094e-04

Joint ci ratio: 1.056805e-01	ci left: 6.085618e-04	ci right 6.769134e-04	k: 1374	n:2140000
Cons ci ratio: 1.649597e-02	ci left: 2.549724e-02	ci right 2.592180e-02	k: 55017	n:2140000
KS ci ratio: 6.612077e-02	ci left: 1.585493e-03	ci right 1.694367e-03	k: 3508	n:2140000
FAM116A   2140000 perm   2239 sec   (956 perm/sec)   p_kst 1.639252e-03   p_cons 2.570888e-02   p_joint 6.420561e-04

Joint ci ratio: 1.061842e-01	ci left: 5.998448e-04	ci right 6.675585e-04	k: 1361	n:2150000
Cons ci ratio: 1.645269e-02	ci left: 2.551252e-02	ci right 2.593620e-02	k: 55306	n:2150000
KS ci ratio: 6.598930e-02	ci left: 1.584523e-03	ci right 1.693106e-03	k: 3522	n:2150000
FAM116A   2150000 perm   2258 sec   (952 perm/sec)   p_kst 1.638140e-03   p_cons 2.572372e-02   p_joint 6.330233e-04

Joint ci ratio: 1.059511e-01	ci left: 5.997719e-04	ci right 6.673193e-04	k: 1367	n:2160000
Cons ci ratio: 1.641414e-02	ci left: 2.551428e-02	ci right 2.593699e-02	k: 55566	n:2160000
KS ci ratio: 6.583065e-02	ci left: 1.584928e-03	ci right 1.693267e-03	k: 3539	n:2160000
FAM116A   2160000 perm   2277 sec   (949 perm/sec)   p_kst 1.638426e-03   p_cons 2.572500e-02   p_joint 6.328704e-04

Joint ci ratio: 1.097066e-01	ci left: 5.557540e-04	ci right 6.207060e-04	k: 1275	n:2170000
Cons ci ratio: 1.637978e-02	ci left: 2.550409e-02	ci right 2.592575e-02	k: 55800	n:2170000
KS ci ratio: 6.573797e-02	ci left: 1.582156e-03	ci right 1.690148e-03	k: 3549	n:2170000
FAM116A   2170000 perm   2295 sec   (945 perm/sec)   p_kst 1.635484e-03   p_cons 2.571429e-02   p_joint 5.875576e-04

Joint ci ratio: 1.093217e-01	ci left: 5.572200e-04	ci right 6.221002e-04	k: 1284	n:2180000
Cons ci ratio: 1.633965e-02	ci left: 2.551228e-02	ci right 2.593302e-02	k: 56074	n:2180000
KS ci ratio: 6.552594e-02	ci left: 1.585276e-03	ci right 1.693119e-03	k: 3572	n:2180000
FAM116A   2180000 perm   2314 sec   (942 perm/sec)   p_kst 1.638532e-03   p_cons 2.572202e-02   p_joint 5.889908e-04

Joint ci ratio: 1.091097e-01	ci left: 5.568964e-04	ci right 6.216050e-04	k: 1289	n:2190000
Cons ci ratio: 1.630070e-02	ci left: 2.551766e-02	ci right 2.593748e-02	k: 56342	n:2190000
KS ci ratio: 6.532505e-02	ci left: 1.587919e-03	ci right 1.695598e-03	k: 3594	n:2190000
FAM116A   2190000 perm   2334 sec   (938 perm/sec)   p_kst 1.641096e-03   p_cons 2.572694e-02   p_joint 5.885845e-04

Joint ci ratio: 1.089409e-01	ci left: 5.561336e-04	ci right 6.206473e-04	k: 1293	n:2200000
Cons ci ratio: 1.626424e-02	ci left: 2.551620e-02	ci right 2.593505e-02	k: 56595	n:2200000
KS ci ratio: 6.523448e-02	ci left: 1.585172e-03	ci right 1.692510e-03	k: 3604	n:2200000
FAM116A   2200000 perm   2353 sec   (935 perm/sec)   p_kst 1.638182e-03   p_cons 2.572500e-02   p_joint 5.877273e-04

Joint ci ratio: 1.100964e-01	ci left: 5.417344e-04	ci right 6.052875e-04	k: 1266	n:2210000
Cons ci ratio: 1.622759e-02	ci left: 2.551611e-02	ci right 2.593400e-02	k: 56851	n:2210000
KS ci ratio: 6.509921e-02	ci left: 1.584676e-03	ci right 1.691750e-03	k: 3619	n:2210000
FAM116A   2210000 perm   2371 sec   (932 perm/sec)   p_kst 1.637557e-03   p_cons 2.572443e-02   p_joint 5.728507e-04

Joint ci ratio: 1.098798e-01	ci left: 5.414844e-04	ci right 6.048752e-04	k: 1271	n:2220000
Cons ci ratio: 1.619161e-02	ci left: 2.551467e-02	ci right 2.593161e-02	k: 57104	n:2220000
KS ci ratio: 6.499164e-02	ci left: 1.582855e-03	ci right 1.689623e-03	k: 3631	n:2220000
FAM116A   2220000 perm   2391 sec   (929 perm/sec)   p_kst 1.635586e-03   p_cons 2.572252e-02   p_joint 5.725225e-04

Joint ci ratio: 1.097936e-01	ci left: 5.399285e-04	ci right 6.030842e-04	k: 1273	n:2230000
Cons ci ratio: 1.615790e-02	ci left: 2.550700e-02	ci right 2.592293e-02	k: 57343	n:2230000
KS ci ratio: 6.486678e-02	ci left: 1.581933e-03	ci right 1.688426e-03	k: 3645	n:2230000
FAM116A   2230000 perm   2410 sec   (925 perm/sec)   p_kst 1.634529e-03   p_cons 2.571435e-02   p_joint 5.708520e-04

Joint ci ratio: 1.092375e-01	ci left: 5.431627e-04	ci right 6.063543e-04	k: 1286	n:2240000
Cons ci ratio: 1.612728e-02	ci left: 2.549050e-02	ci right 2.590537e-02	k: 57562	n:2240000
KS ci ratio: 6.461015e-02	ci left: 1.587608e-03	ci right 1.694044e-03	k: 3674	n:2240000
FAM116A   2240000 perm   2429 sec   (922 perm/sec)   p_kst 1.640179e-03   p_cons 2.569732e-02   p_joint 5.741071e-04

Joint ci ratio: 1.090260e-01	ci left: 5.429102e-04	ci right 6.059423e-04	k: 1291	n:2250000
Cons ci ratio: 1.609054e-02	ci left: 2.549363e-02	ci right 2.590760e-02	k: 57825	n:2250000
KS ci ratio: 6.450498e-02	ci left: 1.585799e-03	ci right 1.691934e-03	k: 3686	n:2250000
FAM116A   2250000 perm   2448 sec   (919 perm/sec)   p_kst 1.638222e-03   p_cons 2.570000e-02   p_joint 5.737778e-04

Joint ci ratio: 1.089418e-01	ci left: 5.413688e-04	ci right 6.041702e-04	k: 1293	n:2260000
Cons ci ratio: 1.605377e-02	ci left: 2.549761e-02	ci right 2.591069e-02	k: 58090	n:2260000
KS ci ratio: 6.436548e-02	ci left: 1.585748e-03	ci right 1.691642e-03	k: 3702	n:2260000
FAM116A   2260000 perm   2467 sec   (916 perm/sec)   p_kst 1.638053e-03   p_cons 2.570354e-02   p_joint 5.721239e-04

Joint ci ratio: 1.085232e-01	ci left: 5.432694e-04	ci right 6.060337e-04	k: 1303	n:2270000
Cons ci ratio: 1.601809e-02	ci left: 2.549892e-02	ci right 2.591110e-02	k: 58349	n:2270000
KS ci ratio: 6.420095e-02	ci left: 1.586998e-03	ci right 1.692694e-03	k: 3721	n:2270000
FAM116A   2270000 perm   2487 sec   (913 perm/sec)   p_kst 1.639207e-03   p_cons 2.570441e-02   p_joint 5.740088e-04

Joint ci ratio: 1.082743e-01	ci left: 5.434469e-04	ci right 6.060785e-04	k: 1309	n:2280000
Cons ci ratio: 1.598405e-02	ci left: 2.549586e-02	ci right 2.590710e-02	k: 58598	n:2280000
KS ci ratio: 6.407199e-02	ci left: 1.586511e-03	ci right 1.691954e-03	k: 3736	n:2280000
FAM116A   2280000 perm   2506 sec   (910 perm/sec)   p_kst 1.638596e-03   p_cons 2.570088e-02   p_joint 5.741228e-04

Joint ci ratio: 1.083573e-01	ci left: 5.402240e-04	ci right 6.025349e-04	k: 1307	n:2290000
Cons ci ratio: 1.594773e-02	ci left: 2.550065e-02	ci right 2.591103e-02	k: 58865	n:2290000
KS ci ratio: 6.388414e-02	ci left: 1.589036e-03	ci right 1.694326e-03	k: 3758	n:2290000
FAM116A   2290000 perm   2526 sec   (907 perm/sec)   p_kst 1.641048e-03   p_cons 2.570524e-02   p_joint 5.707424e-04

Joint ci ratio: 1.081508e-01	ci left: 5.399903e-04	ci right 6.021480e-04	k: 1312	n:2300000
Cons ci ratio: 1.591082e-02	ci left: 2.550800e-02	ci right 2.591754e-02	k: 59138	n:2300000
KS ci ratio: 6.377401e-02	ci left: 1.587689e-03	ci right 1.692702e-03	k: 3771	n:2300000
FAM116A   2300000 perm   2546 sec   (903 perm/sec)   p_kst 1.639565e-03   p_cons 2.571217e-02   p_joint 5.704348e-04

Joint ci ratio: 1.077819e-01	ci left: 5.414435e-04	ci right 6.035425e-04	k: 1321	n:2310000
Cons ci ratio: 1.587759e-02	ci left: 2.550451e-02	ci right 2.591313e-02	k: 59386	n:2310000
KS ci ratio: 6.358037e-02	ci left: 1.590615e-03	ci right 1.695490e-03	k: 3794	n:2310000
FAM116A   2310000 perm   2566 sec   (900 perm/sec)   p_kst 1.642424e-03   p_cons 2.570823e-02   p_joint 5.718615e-04

Joint ci ratio: 1.075787e-01	ci left: 5.412069e-04	ci right 6.031542e-04	k: 1326	n:2320000
Cons ci ratio: 1.584212e-02	ci left: 2.550878e-02	ci right 2.591654e-02	k: 59652	n:2320000
KS ci ratio: 6.342177e-02	ci left: 1.591818e-03	ci right 1.696501e-03	k: 3813	n:2320000
FAM116A   2320000 perm   2585 sec   (897 perm/sec)   p_kst 1.643534e-03   p_cons 2.571207e-02   p_joint 5.715517e-04

Joint ci ratio: 1.073363e-01	ci left: 5.413900e-04	ci right 6.032099e-04	k: 1332	n:2330000
Cons ci ratio: 1.580960e-02	ci left: 2.550446e-02	ci right 2.591131e-02	k: 59898	n:2330000
KS ci ratio: 6.328916e-02	ci left: 1.591744e-03	ci right 1.696196e-03	k: 3829	n:2330000
FAM116A   2330000 perm   2605 sec   (894 perm/sec)   p_kst 1.643348e-03   p_cons 2.570730e-02   p_joint 5.716738e-04

Joint ci ratio: 1.070156e-01	ci left: 5.424035e-04	ci right 6.041425e-04	k: 1340	n:2340000
Cons ci ratio: 1.577525e-02	ci left: 2.550657e-02	ci right 2.591256e-02	k: 60159	n:2340000
KS ci ratio: 6.311630e-02	ci left: 1.593775e-03	ci right 1.698063e-03	k: 3850	n:2340000
FAM116A   2340000 perm   2625 sec   (892 perm/sec)   p_kst 1.645299e-03   p_cons 2.570897e-02   p_joint 5.726496e-04

Joint ci ratio: 1.065793e-01	ci left: 5.446513e-04	ci right 6.063774e-04	k: 1351	n:2350000
Cons ci ratio: 1.574340e-02	ci left: 2.550145e-02	ci right 2.590653e-02	k: 60403	n:2350000
KS ci ratio: 6.297744e-02	ci left: 1.594113e-03	ci right 1.698185e-03	k: 3867	n:2350000
FAM116A   2350000 perm   2644 sec   (889 perm/sec)   p_kst 1.645532e-03   p_cons 2.570340e-02   p_joint 5.748936e-04

Joint ci ratio: 1.063827e-01	ci left: 5.444057e-04	ci right 6.059831e-04	k: 1356	n:2360000
Cons ci ratio: 1.571055e-02	ci left: 2.550017e-02	ci right 2.590438e-02	k: 60656	n:2360000
KS ci ratio: 6.288004e-02	ci left: 1.592363e-03	ci right 1.696154e-03	k: 3879	n:2360000
FAM116A   2360000 perm   2665 sec   (886 perm/sec)   p_kst 1.643644e-03   p_cons 2.570169e-02   p_joint 5.745763e-04

Joint ci ratio: 1.063829e-01	ci left: 5.421086e-04	ci right 6.034262e-04	k: 1356	n:2370000
Cons ci ratio: 1.567632e-02	ci left: 2.550395e-02	ci right 2.590733e-02	k: 60921	n:2370000
KS ci ratio: 6.274273e-02	ci left: 1.592704e-03	ci right 1.696283e-03	k: 3896	n:2370000
FAM116A   2370000 perm   2685 sec   (883 perm/sec)   p_kst 1.643882e-03   p_cons 2.570506e-02   p_joint 5.721519e-04

Joint ci ratio: 1.061874e-01	ci left: 5.418758e-04	ci right 6.030475e-04	k: 1361	n:2380000
Cons ci ratio: 1.564414e-02	ci left: 2.550184e-02	ci right 2.590435e-02	k: 61172	n:2380000
KS ci ratio: 6.260632e-02	ci left: 1.593043e-03	ci right 1.696411e-03	k: 3913	n:2380000
FAM116A   2380000 perm   2705 sec   (880 perm/sec)   p_kst 1.644118e-03   p_cons 2.570252e-02   p_joint 5.718487e-04

Joint ci ratio: 1.058382e-01	ci left: 5.432744e-04	ci right 6.043898e-04	k: 1370	n:2390000
Cons ci ratio: 1.561243e-02	ci left: 2.549892e-02	ci right 2.590056e-02	k: 61421	n:2390000
KS ci ratio: 6.245488e-02	ci left: 1.594203e-03	ci right 1.697387e-03	k: 3932	n:2390000
FAM116A   2390000 perm   2725 sec   (877 perm/sec)   p_kst 1.645188e-03   p_cons 2.569916e-02   p_joint 5.732218e-04

Joint ci ratio: 1.069765e-01	ci left: 5.292488e-04	ci right 5.894669e-04	k: 1341	n:2400000
Cons ci ratio: 1.557948e-02	ci left: 2.550058e-02	ci right 2.590140e-02	k: 61681	n:2400000
KS ci ratio: 6.233614e-02	ci left: 1.593713e-03	ci right 1.696662e-03	k: 3947	n:2400000
FAM116A   2400000 perm   2745 sec   (874 perm/sec)   p_kst 1.644583e-03   p_cons 2.570042e-02   p_joint 5.587500e-04

Joint ci ratio: 1.068174e-01	ci left: 5.286681e-04	ci right 5.887251e-04	k: 1345	n:2410000
Cons ci ratio: 1.554931e-02	ci left: 2.549397e-02	ci right 2.589389e-02	k: 61921	n:2410000
KS ci ratio: 6.222594e-02	ci left: 1.592819e-03	ci right 1.695522e-03	k: 3961	n:2410000
FAM116A   2410000 perm   2766 sec   (871 perm/sec)   p_kst 1.643568e-03   p_cons 2.569336e-02   p_joint 5.580913e-04

Joint ci ratio: 1.067779e-01	ci left: 5.268857e-04	ci right 5.867167e-04	k: 1346	n:2420000
Cons ci ratio: 1.551984e-02	ci left: 2.548576e-02	ci right 2.588480e-02	k: 62157	n:2420000
KS ci ratio: 6.212415e-02	ci left: 1.591525e-03	ci right 1.693971e-03	k: 3974	n:2420000
FAM116A   2420000 perm   2787 sec   (868 perm/sec)   p_kst 1.642149e-03   p_cons 2.568471e-02   p_joint 5.561983e-04

Joint ci ratio: 1.068177e-01	ci left: 5.243168e-04	ci right 5.838797e-04	k: 1345	n:2430000
Cons ci ratio: 1.548709e-02	ci left: 2.548869e-02	ci right 2.588692e-02	k: 62420	n:2430000
KS ci ratio: 6.203064e-02	ci left: 1.589837e-03	ci right 1.692015e-03	k: 3986	n:2430000
FAM116A   2430000 perm   2807 sec   (866 perm/sec)   p_kst 1.640329e-03   p_cons 2.568724e-02   p_joint 5.534979e-04

Joint ci ratio: 1.065804e-01	ci left: 5.245614e-04	ci right 5.840114e-04	k: 1351	n:2440000
Cons ci ratio: 1.545467e-02	ci left: 2.549119e-02	ci right 2.588862e-02	k: 62682	n:2440000
KS ci ratio: 6.187560e-02	ci left: 1.591391e-03	ci right 1.693404e-03	k: 4006	n:2440000
FAM116A   2440000 perm   2828 sec   (863 perm/sec)   p_kst 1.641803e-03   p_cons 2.568934e-02   p_joint 5.536885e-04

Joint ci ratio: 1.063055e-01	ci left: 5.252014e-04	ci right 5.845608e-04	k: 1358	n:2450000
Cons ci ratio: 1.542560e-02	ci left: 2.548351e-02	ci right 2.588006e-02	k: 62919	n:2450000
KS ci ratio: 6.174475e-02	ci left: 1.591728e-03	ci right 1.693538e-03	k: 4023	n:2450000
FAM116A   2450000 perm   2849 sec   (860 perm/sec)   p_kst 1.642041e-03   p_cons 2.568122e-02   p_joint 5.542857e-04

Joint ci ratio: 1.062665e-01	ci left: 5.234621e-04	ci right 5.826019e-04	k: 1359	n:2460000
Cons ci ratio: 1.539344e-02	ci left: 2.548642e-02	ci right 2.588218e-02	k: 63182	n:2460000
KS ci ratio: 6.168357e-02	ci left: 1.588459e-03	ci right 1.689956e-03	k: 4031	n:2460000
FAM116A   2460000 perm   2870 sec   (857 perm/sec)   p_kst 1.638618e-03   p_cons 2.568374e-02   p_joint 5.524390e-04

Joint ci ratio: 1.058392e-01	ci left: 5.256782e-04	ci right 5.848147e-04	k: 1370	n:2470000
Cons ci ratio: 1.536298e-02	ci left: 2.548446e-02	ci right 2.587941e-02	k: 63433	n:2470000
KS ci ratio: 6.155394e-02	ci left: 1.588804e-03	ci right 1.690103e-03	k: 4048	n:2470000
FAM116A   2470000 perm   2891 sec   (854 perm/sec)   p_kst 1.638866e-03   p_cons 2.568138e-02   p_joint 5.546559e-04

Joint ci ratio: 9.597810e-02	ci left: 6.399101e-04	ci right 7.048134e-04	k: 1666	n:2480000
Cons ci ratio: 1.533318e-02	ci left: 2.548092e-02	ci right 2.587503e-02	k: 63680	n:2480000
KS ci ratio: 6.150091e-02	ci left: 1.585177e-03	ci right 1.686154e-03	k: 4055	n:2480000
FAM116A   2480000 perm   2912 sec   (852 perm/sec)   p_kst 1.635081e-03   p_cons 2.567742e-02   p_joint 6.717742e-04

Outputting figure to mutsig2_images.part000000000060/FAM116A.6_1907_2480000_0.0016351_0.025677_0.00067177.png
                gene_name: FAM116A
               theta_stop: 0.096 
                    nperm: 2480000 
                     p_ks: 0.0016 
        ci_ks_bounds_left: 0.0016 
       ci_ks_bounds_right: 0.0017 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.00067 
     ci_joint_bounds_left: 0.00064 
    ci_joint_bounds_right: 0.00070 

Current progress: 18 percent done.
FAM126A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.818042e-02	ci left: 8.153757e-01	ci right 8.304357e-01	k: 8230	n:10000
KS ci ratio: 1.069390e-02	ci left: 9.256491e-01	ci right 9.356983e-01	k: 9308	n:10000
FAM126A   10000 perm   2 sec   (5366 perm/sec)   p_kst 9.308000e-01   p_cons 8.230000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM126A.6_1606_10000_0.9308_0.823_1.png
                gene_name: FAM126A
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
FAM135A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.419792e-02	ci left: 4.304391e-01	ci right 4.499957e-01	k: 4402	n:10000
Cons ci ratio: 8.511018e-02	ci left: 1.674999e-01	ci right 1.824899e-01	k: 1749	n:10000
KS ci ratio: 4.216718e-02	ci left: 4.536882e-01	ci right 4.733331e-01	k: 4635	n:10000
FAM135A   10000 perm   2 sec   (4537 perm/sec)   p_kst 4.635000e-01   p_cons 1.749000e-01   p_joint 4.402000e-01

Outputting figure to mutsig2_images.part000000000060/FAM135A.6_4706_10000_0.4635_0.1749_0.4402.png
                gene_name: FAM135A
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 22 percent done.
FAM13C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.238453e-02	ci left: 5.845997e-01	ci right 6.039453e-01	k: 5943	n:10000
Cons ci ratio: 6.290595e-02	ci left: 2.708188e-01	ci right 2.885097e-01	k: 2796	n:10000
KS ci ratio: 2.585663e-02	ci left: 6.876848e-01	ci right 7.058004e-01	k: 6968	n:10000
FAM13C   10000 perm   2 sec   (5203 perm/sec)   p_kst 6.968000e-01   p_cons 2.796000e-01   p_joint 5.943000e-01

Outputting figure to mutsig2_images.part000000000060/FAM13C.6_1814_10000_0.6968_0.2796_0.5943.png
                gene_name: FAM13C
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 24 percent done.
FAM113B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.570673e-02	ci left: 8.547786e-01	ci right 8.684100e-01	k: 8617	n:10000
Cons ci ratio: 1.871463e-02	ci left: 8.066388e-01	ci right 8.219776e-01	k: 8144	n:10000
KS ci ratio: 2.506982e-02	ci left: 7.006935e-01	ci right 7.185842e-01	k: 7097	n:10000
FAM113B   10000 perm   2 sec   (5447 perm/sec)   p_kst 7.097000e-01   p_cons 8.144000e-01   p_joint 8.617000e-01

Outputting figure to mutsig2_images.part000000000060/FAM113B.5_1303_10000_0.7097_0.8144_0.8617.png
                gene_name: FAM113B
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 25 percent done.
FAM120A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.901550e-02	ci left: 3.804235e-01	ci right 3.996406e-01	k: 3900	n:10000
Cons ci ratio: 8.285235e-02	ci left: 1.752679e-01	ci right 1.905173e-01	k: 1828	n:10000
KS ci ratio: 3.627716e-02	ci left: 5.287694e-01	ci right 5.484081e-01	k: 5386	n:10000
FAM120A   10000 perm   2 sec   (4777 perm/sec)   p_kst 5.386000e-01   p_cons 1.828000e-01   p_joint 3.900000e-01

Outputting figure to mutsig2_images.part000000000060/FAM120A.5_3429_10000_0.5386_0.1828_0.39.png
                gene_name: FAM120A
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 27 percent done.
FAM129C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.859028e-02	ci left: 2.376826e-01	ci right 2.546655e-01	k: 2461	n:10000
Cons ci ratio: 9.576556e-02	ci left: 1.365853e-01	ci right 1.504231e-01	k: 1434	n:10000
KS ci ratio: 3.706525e-02	ci left: 5.180585e-01	ci right 5.377252e-01	k: 5279	n:10000
FAM129C   10000 perm   2 sec   (5643 perm/sec)   p_kst 5.279000e-01   p_cons 1.434000e-01   p_joint 2.461000e-01

Outputting figure to mutsig2_images.part000000000060/FAM129C.5_2275_10000_0.5279_0.1434_0.2461.png
                gene_name: FAM129C
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 29 percent done.
FAM149A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.626723e-02	ci left: 6.809317e-01	ci right 6.991575e-01	k: 6901	n:10000
KS ci ratio: 1.198297e-02	ci left: 9.089508e-01	ci right 9.200063e-01	k: 9146	n:10000
FAM149A   10000 perm   2 sec   (5393 perm/sec)   p_kst 9.146000e-01   p_cons 6.901000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM149A.5_1493_10000_0.9146_0.6901_1.png
                gene_name: FAM149A
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
FAM107B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.289665e-02	ci left: 3.450184e-01	ci right 3.638665e-01	k: 3544	n:10000
Cons ci ratio: 7.783900e-02	ci left: 1.943656e-01	ci right 2.102082e-01	k: 2022	n:10000
KS ci ratio: 3.306720e-02	ci left: 5.744668e-01	ci right 5.938842e-01	k: 5842	n:10000
FAM107B   10000 perm   2 sec   (6269 perm/sec)   p_kst 5.842000e-01   p_cons 2.022000e-01   p_joint 3.544000e-01

Outputting figure to mutsig2_images.part000000000060/FAM107B.4_941_10000_0.5842_0.2022_0.3544.png
                gene_name: FAM107B
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 33 percent done.
FAM110B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.036150e-01	ci left: 1.186757e-01	ci right 1.317435e-01	k: 1251	n:10000
Cons ci ratio: 2.268605e-02	ci left: 7.404812e-01	ci right 7.575735e-01	k: 7491	n:10000
KS ci ratio: 1.865137e-01	ci left: 3.834345e-02	ci right 4.632594e-02	k: 422	n:10000
FAM110B   10000 perm   2 sec   (6188 perm/sec)   p_kst 4.220000e-02   p_cons 7.491000e-01   p_joint 1.251000e-01

Joint ci ratio: 9.280368e-02	ci left: 7.808672e-02	ci right 8.573535e-02	k: 1637	n:20000
Cons ci ratio: 1.611414e-02	ci left: 7.413175e-01	ci right 7.534105e-01	k: 14948	n:20000
KS ci ratio: 1.327921e-01	ci left: 3.897135e-02	ci right 4.456287e-02	k: 834	n:20000
FAM110B   20000 perm   4 sec   (5274 perm/sec)   p_kst 4.170000e-02   p_cons 7.474000e-01   p_joint 8.185000e-02

Joint ci ratio: 5.603834e-02	ci left: 1.362895e-01	ci right 1.441803e-01	k: 4206	n:30000
Cons ci ratio: 1.317576e-02	ci left: 7.419060e-01	ci right 7.517795e-01	k: 22406	n:30000
KS ci ratio: 1.065953e-01	ci left: 4.082963e-02	ci right 4.545937e-02	k: 1293	n:30000
FAM110B   30000 perm   6 sec   (5102 perm/sec)   p_kst 4.310000e-02   p_cons 7.468667e-01   p_joint 1.402000e-01

Joint ci ratio: 5.209468e-02	ci left: 1.207603e-01	ci right 1.272444e-01	k: 4959	n:40000
Cons ci ratio: 1.138240e-02	ci left: 7.435138e-01	ci right 7.520502e-01	k: 29912	n:40000
KS ci ratio: 9.240792e-02	ci left: 4.105722e-02	ci right 4.505946e-02	k: 1721	n:40000
FAM110B   40000 perm   8 sec   (4972 perm/sec)   p_kst 4.302500e-02   p_cons 7.478000e-01   p_joint 1.239750e-01

Outputting figure to mutsig2_images.part000000000060/FAM110B.4_1117_40000_0.043025_0.7478_0.12398.png
                gene_name: FAM110B
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 35 percent done.
FAM115C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.108203e-01	ci left: 1.050046e-01	ci right 1.174229e-01	k: 1111	n:10000
Cons ci ratio: 7.781489e-02	ci left: 1.944641e-01	ci right 2.103097e-01	k: 2023	n:10000
KS ci ratio: 1.038998e-01	ci left: 1.180892e-01	ci right 1.311304e-01	k: 1245	n:10000
FAM115C   10000 perm   2 sec   (5399 perm/sec)   p_kst 1.245000e-01   p_cons 2.023000e-01   p_joint 1.111000e-01

Joint ci ratio: 7.522128e-02	ci left: 1.150350e-01	ci right 1.240759e-01	k: 2390	n:20000
Cons ci ratio: 5.561031e-02	ci left: 1.934364e-01	ci right 2.045513e-01	k: 3979	n:20000
KS ci ratio: 7.247628e-02	ci left: 1.229562e-01	ci right 1.322524e-01	k: 2551	n:20000
FAM115C   20000 perm   4 sec   (4708 perm/sec)   p_kst 1.275500e-01   p_cons 1.989500e-01   p_joint 1.195000e-01

Outputting figure to mutsig2_images.part000000000060/FAM115C.4_3140_20000_0.12755_0.19895_0.1195.png
                gene_name: FAM115C
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 37 percent done.
FAM123A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.355196e-02	ci left: 1.728091e-01	ci right 1.879776e-01	k: 1803	n:10000
Cons ci ratio: 8.773547e-02	ci left: 1.590500e-01	ci right 1.737448e-01	k: 1663	n:10000
KS ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
FAM123A   10000 perm   2 sec   (5221 perm/sec)   p_kst 2.275000e-01   p_cons 1.663000e-01   p_joint 1.803000e-01

Outputting figure to mutsig2_images.part000000000060/FAM123A.4_2020_10000_0.2275_0.1663_0.1803.png
                gene_name: FAM123A
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 39 percent done.
FAM124A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.751786e-02	ci left: 1.322754e-01	ci right 1.459356e-01	k: 1390	n:10000
Cons ci ratio: 1.789177e-01	ci left: 4.168977e-02	ci right 4.997740e-02	k: 457	n:10000
KS ci ratio: 3.733377e-02	ci left: 5.144559e-01	ci right 5.341300e-01	k: 5243	n:10000
FAM124A   10000 perm   2 sec   (5269 perm/sec)   p_kst 5.243000e-01   p_cons 4.570000e-02   p_joint 1.390000e-01

Joint ci ratio: 7.916654e-02	ci left: 1.048604e-01	ci right 1.135536e-01	k: 2183	n:20000
Cons ci ratio: 1.235762e-01	ci left: 4.493272e-02	ci right 5.089960e-02	k: 957	n:20000
KS ci ratio: 2.636908e-02	ci left: 5.179509e-01	ci right 5.318419e-01	k: 10498	n:20000
FAM124A   20000 perm   4 sec   (4889 perm/sec)   p_kst 5.249000e-01   p_cons 4.785000e-02   p_joint 1.091500e-01

Joint ci ratio: 6.875176e-02	ci left: 9.439545e-02	ci right 1.011493e-01	k: 2932	n:30000
Cons ci ratio: 1.029485e-01	ci left: 4.372192e-02	ci right 4.849981e-02	k: 1382	n:30000
KS ci ratio: 2.173596e-02	ci left: 5.144950e-01	ci right 5.258345e-01	k: 15605	n:30000
FAM124A   30000 perm   6 sec   (4712 perm/sec)   p_kst 5.201667e-01   p_cons 4.606667e-02   p_joint 9.773333e-02

Joint ci ratio: 5.570097e-02	ci left: 1.070978e-01	ci right 1.132589e-01	k: 4406	n:40000
Cons ci ratio: 8.830621e-02	ci left: 4.487300e-02	ci right 4.904308e-02	k: 1877	n:40000
KS ci ratio: 1.886154e-02	ci left: 5.142650e-01	ci right 5.240823e-01	k: 20767	n:40000
FAM124A   40000 perm   9 sec   (4598 perm/sec)   p_kst 5.191750e-01   p_cons 4.692500e-02   p_joint 1.101500e-01

Outputting figure to mutsig2_images.part000000000060/FAM124A.4_1769_40000_0.51918_0.046925_0.11015.png
                gene_name: FAM124A
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 41 percent done.
FAM129A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.522390e-02	ci left: 1.379571e-01	ci right 1.518505e-01	k: 1448	n:10000
Cons ci ratio: 2.663449e-01	ci left: 1.837333e-02	ci right 2.411031e-02	k: 211	n:10000
KS ci ratio: 6.254881e-02	ci left: 2.730962e-01	ci right 2.908310e-01	k: 2819	n:10000
FAM129A   10000 perm   2 sec   (5253 perm/sec)   p_kst 2.819000e-01   p_cons 2.110000e-02   p_joint 1.448000e-01

Joint ci ratio: 8.179755e-02	ci left: 9.877126e-02	ci right 1.072446e-01	k: 2059	n:20000
Cons ci ratio: 1.906485e-01	ci left: 1.872403e-02	ci right 2.271702e-02	k: 413	n:20000
KS ci ratio: 4.400609e-02	ci left: 2.777572e-01	ci right 2.903056e-01	k: 5680	n:20000
FAM129A   20000 perm   4 sec   (4701 perm/sec)   p_kst 2.840000e-01   p_cons 2.065000e-02   p_joint 1.029500e-01

Joint ci ratio: 8.757789e-02	ci left: 5.985196e-02	ci right 6.536645e-02	k: 1877	n:30000
Cons ci ratio: 1.564386e-01	ci left: 1.889435e-02	ci right 2.213278e-02	k: 614	n:30000
KS ci ratio: 3.571857e-02	ci left: 2.813217e-01	ci right 2.915863e-01	k: 8593	n:30000
FAM129A   30000 perm   7 sec   (4495 perm/sec)   p_kst 2.864333e-01   p_cons 2.046667e-02   p_joint 6.256667e-02

Joint ci ratio: 7.410786e-02	ci left: 6.294717e-02	ci right 6.781616e-02	k: 2614	n:40000
Cons ci ratio: 1.366763e-01	ci left: 1.877125e-02	ci right 2.154902e-02	k: 805	n:40000
KS ci ratio: 3.133462e-02	ci left: 2.767977e-01	ci right 2.856341e-01	k: 11248	n:40000
FAM129A   40000 perm   9 sec   (4359 perm/sec)   p_kst 2.812000e-01   p_cons 2.012500e-02   p_joint 6.535000e-02

Joint ci ratio: 6.161884e-02	ci left: 7.256803e-02	ci right 7.720148e-02	k: 3743	n:50000
Cons ci ratio: 1.199879e-01	ci left: 1.964460e-02	ci right 2.217145e-02	k: 1044	n:50000
KS ci ratio: 2.790400e-02	ci left: 2.790344e-01	ci right 2.869508e-01	k: 14149	n:50000
FAM129A   50000 perm   12 sec   (4258 perm/sec)   p_kst 2.829800e-01   p_cons 2.088000e-02   p_joint 7.486000e-02

Joint ci ratio: 5.424501e-02	ci left: 7.789064e-02	ci right 8.225008e-02	k: 4803	n:60000
Cons ci ratio: 1.043789e-01	ci left: 2.176660e-02	ci right 2.417984e-02	k: 1377	n:60000
KS ci ratio: 2.547067e-02	ci left: 2.794145e-01	ci right 2.866398e-01	k: 16981	n:60000
FAM129A   60000 perm   14 sec   (4168 perm/sec)   p_kst 2.830167e-01   p_cons 2.295000e-02   p_joint 8.005000e-02

Joint ci ratio: 4.829248e-02	ci left: 8.394725e-02	ci right 8.811571e-02	k: 6021	n:70000
Cons ci ratio: 9.653381e-02	ci left: 2.190218e-02	ci right 2.413760e-02	k: 1610	n:70000
KS ci ratio: 2.282604e-02	ci left: 2.930326e-01	ci right 2.998129e-01	k: 20749	n:70000
FAM129A   70000 perm   17 sec   (4089 perm/sec)   p_kst 2.964143e-01   p_cons 2.300000e-02   p_joint 8.601429e-02

Outputting figure to mutsig2_images.part000000000060/FAM129A.4_2843_70000_0.29641_0.023_0.086014.png
                gene_name: FAM129A
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.088 

Current progress: 43 percent done.
FAM134B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.029588e-02	ci left: 3.682841e-01	ci right 3.873871e-01	k: 3778	n:10000
Cons ci ratio: 7.494614e-02	ci left: 2.066861e-01	ci right 2.228804e-01	k: 2147	n:10000
KS ci ratio: 5.144913e-02	ci left: 3.577420e-01	ci right 3.767354e-01	k: 3672	n:10000
FAM134B   10000 perm   2 sec   (5972 perm/sec)   p_kst 3.672000e-01   p_cons 2.147000e-01   p_joint 3.778000e-01

Outputting figure to mutsig2_images.part000000000060/FAM134B.4_1569_10000_0.3672_0.2147_0.3778.png
                gene_name: FAM134B
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 45 percent done.
FAM154A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.313289e-01	ci left: 7.640391e-02	ci right 8.724117e-02	k: 817	n:10000
Cons ci ratio: 3.144643e-01	ci left: 1.289402e-02	ci right 1.779424e-02	k: 152	n:10000
KS ci ratio: 1.980869e-02	ci left: 7.885747e-01	ci right 8.044522e-01	k: 7966	n:10000
FAM154A   10000 perm   2 sec   (6077 perm/sec)   p_kst 7.966000e-01   p_cons 1.520000e-02   p_joint 8.170000e-02

Joint ci ratio: 1.025756e-01	ci left: 6.454903e-02	ci right 7.157718e-02	k: 1360	n:20000
Cons ci ratio: 2.209035e-01	ci left: 1.378643e-02	ci right 1.725651e-02	k: 309	n:20000
KS ci ratio: 1.419869e-02	ci left: 7.864592e-01	ci right 7.977558e-01	k: 15843	n:20000
FAM154A   20000 perm   4 sec   (5414 perm/sec)   p_kst 7.921500e-01   p_cons 1.545000e-02   p_joint 6.800000e-02

Joint ci ratio: 7.746978e-02	ci left: 7.557899e-02	ci right 8.170290e-02	k: 2358	n:30000
Cons ci ratio: 1.829841e-01	ci left: 1.368681e-02	ci right 1.647492e-02	k: 451	n:30000
KS ci ratio: 1.159137e-02	ci left: 7.875639e-01	ci right 7.967794e-01	k: 23766	n:30000
FAM154A   30000 perm   6 sec   (5134 perm/sec)   p_kst 7.922000e-01   p_cons 1.503333e-02   p_joint 7.860000e-02

Joint ci ratio: 7.584495e-02	ci left: 6.022083e-02	ci right 6.499291e-02	k: 2503	n:40000
Cons ci ratio: 1.584250e-01	ci left: 1.387966e-02	ci right 1.629149e-02	k: 602	n:40000
KS ci ratio: 1.001782e-02	ci left: 7.888700e-01	ci right 7.968375e-01	k: 31715	n:40000
FAM154A   40000 perm   8 sec   (4982 perm/sec)   p_kst 7.928750e-01   p_cons 1.505000e-02   p_joint 6.257500e-02

Joint ci ratio: 6.128331e-02	ci left: 7.331725e-02	ci right 7.797216e-02	k: 3781	n:50000
Cons ci ratio: 1.412961e-01	ci left: 1.408790e-02	ci right 1.624892e-02	k: 757	n:50000
KS ci ratio: 8.986238e-03	ci left: 7.883350e-01	ci right 7.954711e-01	k: 39596	n:50000
FAM154A   50000 perm   10 sec   (4856 perm/sec)   p_kst 7.919200e-01   p_cons 1.514000e-02   p_joint 7.562000e-02

Joint ci ratio: 4.898156e-02	ci left: 9.408263e-02	ci right 9.882315e-02	k: 5786	n:60000
Cons ci ratio: 1.290285e-01	ci left: 1.417165e-02	ci right 1.614232e-02	k: 908	n:60000
KS ci ratio: 8.220356e-03	ci left: 7.879589e-01	ci right 7.944796e-01	k: 47474	n:60000
FAM154A   60000 perm   13 sec   (4749 perm/sec)   p_kst 7.912333e-01   p_cons 1.513333e-02   p_joint 9.643333e-02

Joint ci ratio: 4.773094e-02	ci left: 8.578414e-02	ci right 8.999295e-02	k: 6151	n:70000
Cons ci ratio: 1.191440e-01	ci left: 1.432051e-02	ci right 1.614856e-02	k: 1065	n:70000
KS ci ratio: 7.602119e-03	ci left: 7.885719e-01	ci right 7.946039e-01	k: 55412	n:70000
FAM154A   70000 perm   15 sec   (4653 perm/sec)   p_kst 7.916000e-01   p_cons 1.521429e-02   p_joint 8.787143e-02

Joint ci ratio: 4.930560e-02	ci left: 7.141671e-02	ci right 7.503931e-02	k: 5857	n:80000
Cons ci ratio: 1.191460e-01	ci left: 1.255401e-02	ci right 1.415657e-02	k: 1067	n:80000
KS ci ratio: 7.107626e-03	ci left: 7.889320e-01	ci right 7.945718e-01	k: 63341	n:80000
FAM154A   80000 perm   18 sec   (4561 perm/sec)   p_kst 7.917625e-01   p_cons 1.333750e-02   p_joint 7.321250e-02

Joint ci ratio: 3.959203e-02	ci left: 9.627424e-02	ci right 1.001739e-01	k: 8839	n:90000
Cons ci ratio: 1.124982e-01	ci left: 1.256174e-02	ci right 1.406987e-02	k: 1197	n:90000
KS ci ratio: 6.690433e-03	ci left: 7.896236e-01	ci right 7.949353e-01	k: 71306	n:90000
FAM154A   90000 perm   20 sec   (4475 perm/sec)   p_kst 7.922889e-01   p_cons 1.330000e-02   p_joint 9.821111e-02

Joint ci ratio: 4.968918e-02	ci left: 5.713231e-02	ci right 6.005336e-02	k: 5858	n:100000
Cons ci ratio: 9.957894e-02	ci left: 1.449955e-02	ci right 1.602875e-02	k: 1525	n:100000
KS ci ratio: 6.405848e-03	ci left: 7.866988e-01	ci right 7.917644e-01	k: 78924	n:100000
FAM154A   100000 perm   23 sec   (4393 perm/sec)   p_kst 7.892400e-01   p_cons 1.525000e-02   p_joint 5.858000e-02

Outputting figure to mutsig2_images.part000000000060/FAM154A.4_1441_100000_0.78924_0.01525_0.05858.png
                gene_name: FAM154A
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.060 

Current progress: 47 percent done.
FAM154B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.388154e-02	ci left: 7.204755e-01	ci right 7.379908e-01	k: 7293	n:10000
Cons ci ratio: 5.471340e-02	ci left: 3.298194e-01	ci right 3.484744e-01	k: 3391	n:10000
KS ci ratio: 1.877649e-02	ci left: 8.056233e-01	ci right 8.209937e-01	k: 8134	n:10000
FAM154B   10000 perm   2 sec   (6061 perm/sec)   p_kst 8.134000e-01   p_cons 3.391000e-01   p_joint 7.293000e-01

Outputting figure to mutsig2_images.part000000000060/FAM154B.4_1209_10000_0.8134_0.3391_0.7293.png
                gene_name: FAM154B
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 49 percent done.
FAM161A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.196764e-02	ci left: 9.091566e-01	ci right 9.202004e-01	k: 9148	n:10000
KS ci ratio: 1.312124e-02	ci left: 8.932351e-01	ci right 9.051312e-01	k: 8993	n:10000
FAM161A   10000 perm   2 sec   (6131 perm/sec)   p_kst 8.993000e-01   p_cons 9.148000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM161A.4_2007_10000_0.8993_0.9148_1.png
                gene_name: FAM161A
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
FAM163A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.550231e-02	ci left: 6.935327e-01	ci right 7.115492e-01	k: 7026	n:10000
Cons ci ratio: 8.490444e-02	ci left: 1.681880e-01	ci right 1.832014e-01	k: 1756	n:10000
KS ci ratio: 1.458799e-02	ci left: 8.718340e-01	ci right 8.847448e-01	k: 8784	n:10000
FAM163A   10000 perm   2 sec   (5959 perm/sec)   p_kst 8.784000e-01   p_cons 1.756000e-01   p_joint 7.026000e-01

Outputting figure to mutsig2_images.part000000000060/FAM163A.4_512_10000_0.8784_0.1756_0.7026.png
                gene_name: FAM163A
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 53 percent done.
FAM105A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.558222e-02	ci left: 5.383830e-01	ci right 5.579889e-01	k: 5482	n:10000
Cons ci ratio: 3.807373e-02	ci left: 5.046513e-01	ci right 5.243403e-01	k: 5145	n:10000
KS ci ratio: 5.755268e-02	ci left: 3.076861e-01	ci right 3.260207e-01	k: 3168	n:10000
FAM105A   10000 perm   2 sec   (6207 perm/sec)   p_kst 3.168000e-01   p_cons 5.145000e-01   p_joint 5.482000e-01

Outputting figure to mutsig2_images.part000000000060/FAM105A.3_1103_10000_0.3168_0.5145_0.5482.png
                gene_name: FAM105A
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 55 percent done.
FAM118B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.019158e-03	ci left: 9.453375e-01	ci right 9.539982e-01	k: 9498	n:10000
Cons ci ratio: 1.068561e-02	ci left: 9.257524e-01	ci right 9.357949e-01	k: 9309	n:10000
KS ci ratio: 1.803680e-02	ci left: 8.177134e-01	ci right 8.326966e-01	k: 8253	n:10000
FAM118B   10000 perm   2 sec   (6236 perm/sec)   p_kst 8.253000e-01   p_cons 9.309000e-01   p_joint 9.498000e-01

Outputting figure to mutsig2_images.part000000000060/FAM118B.3_1084_10000_0.8253_0.9309_0.9498.png
                gene_name: FAM118B
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 57 percent done.
FAM119A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.649311e-02	ci left: 3.157228e-01	ci right 3.341792e-01	k: 3249	n:10000
Cons ci ratio: 1.889386e-02	ci left: 8.036941e-01	ci right 8.191241e-01	k: 8115	n:10000
KS ci ratio: 1.128281e-01	ci left: 1.015915e-01	ci right 1.138381e-01	k: 1076	n:10000
FAM119A   10000 perm   2 sec   (6453 perm/sec)   p_kst 1.076000e-01   p_cons 8.115000e-01   p_joint 3.249000e-01

Joint ci ratio: 4.690870e-02	ci left: 2.526909e-01	ci right 2.648793e-01	k: 5175	n:20000
Cons ci ratio: 1.327005e-02	ci left: 8.080819e-01	ci right 8.189268e-01	k: 16271	n:20000
KS ci ratio: 7.886285e-02	ci left: 1.055973e-01	ci right 1.143165e-01	k: 2198	n:20000
FAM119A   20000 perm   4 sec   (5688 perm/sec)   p_kst 1.099000e-01   p_cons 8.135500e-01   p_joint 2.587500e-01

Outputting figure to mutsig2_images.part000000000060/FAM119A.3_669_20000_0.1099_0.81355_0.25875.png
                gene_name: FAM119A
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 59 percent done.
FAM123C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.684207e-02	ci left: 8.369418e-01	ci right 8.512571e-01	k: 8442	n:10000
Cons ci ratio: 3.308081e-02	ci left: 5.742662e-01	ci right 5.936849e-01	k: 5840	n:10000
KS ci ratio: 6.313950e-03	ci left: 9.715363e-01	ci right 9.777830e-01	k: 9748	n:10000
FAM123C   10000 perm   2 sec   (5240 perm/sec)   p_kst 9.748000e-01   p_cons 5.840000e-01   p_joint 8.442000e-01

Outputting figure to mutsig2_images.part000000000060/FAM123C.3_2590_10000_0.9748_0.584_0.8442.png
                gene_name: FAM123C
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 61 percent done.
FAM127B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.128515e-02	ci left: 7.639523e-01	ci right 7.804888e-01	k: 7723	n:10000
KS ci ratio: 2.302394e-02	ci left: 7.348207e-01	ci right 7.520373e-01	k: 7435	n:10000
FAM127B   10000 perm   2 sec   (6560 perm/sec)   p_kst 7.435000e-01   p_cons 7.723000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM127B.3_410_10000_0.7435_0.7723_1.png
                gene_name: FAM127B
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
FAM129B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.263474e-01	ci left: 8.222674e-02	ci right 9.341473e-02	k: 877	n:10000
Cons ci ratio: 1.831486e-01	ci left: 3.977673e-02	ci right 4.789171e-02	k: 437	n:10000
KS ci ratio: 1.290236e-01	ci left: 7.902317e-02	ci right 9.002028e-02	k: 844	n:10000
FAM129B   10000 perm   2 sec   (6036 perm/sec)   p_kst 8.440000e-02   p_cons 4.370000e-02   p_joint 8.770000e-02

Joint ci ratio: 1.409142e-01	ci left: 3.461962e-02	ci right 3.991600e-02	k: 744	n:20000
Cons ci ratio: 1.282129e-01	ci left: 4.178055e-02	ci right 4.755277e-02	k: 892	n:20000
KS ci ratio: 9.082502e-02	ci left: 8.131738e-02	ci right 8.910371e-02	k: 1703	n:20000
FAM129B   20000 perm   4 sec   (5344 perm/sec)   p_kst 8.515000e-02   p_cons 4.460000e-02   p_joint 3.720000e-02

Joint ci ratio: 1.117978e-01	ci left: 3.716172e-02	ci right 4.159472e-02	k: 1180	n:30000
Cons ci ratio: 1.036576e-01	ci left: 4.313673e-02	ci right 4.788512e-02	k: 1364	n:30000
KS ci ratio: 7.359372e-02	ci left: 8.321148e-02	ci right 8.960221e-02	k: 2591	n:30000
FAM129B   30000 perm   6 sec   (5088 perm/sec)   p_kst 8.636667e-02   p_cons 4.546667e-02   p_joint 3.933333e-02

Joint ci ratio: 1.066845e-01	ci left: 3.090553e-02	ci right 3.441275e-02	k: 1305	n:40000
Cons ci ratio: 8.908038e-02	ci left: 4.411441e-02	ci right 4.825179e-02	k: 1846	n:40000
KS ci ratio: 6.452420e-02	ci left: 8.174278e-02	ci right 8.721772e-02	k: 3378	n:40000
FAM129B   40000 perm   8 sec   (4932 perm/sec)   p_kst 8.445000e-02   p_cons 4.615000e-02   p_joint 3.262500e-02

Joint ci ratio: 9.285082e-02	ci left: 3.281958e-02	ci right 3.603477e-02	k: 1720	n:50000
Cons ci ratio: 8.096677e-02	ci left: 4.296403e-02	ci right 4.660906e-02	k: 2238	n:50000
KS ci ratio: 5.798830e-02	ci left: 8.130653e-02	ci right 8.618192e-02	k: 4186	n:50000
FAM129B   50000 perm   11 sec   (4747 perm/sec)   p_kst 8.372000e-02   p_cons 4.476000e-02   p_joint 3.440000e-02

Outputting figure to mutsig2_images.part000000000060/FAM129B.3_2317_50000_0.08372_0.04476_0.0344.png
                gene_name: FAM129B
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 65 percent done.
FAM134A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.795407e-03	ci left: 9.365128e-01	ci right 9.458281e-01	k: 9413	n:10000
KS ci ratio: 3.133409e-02	ci left: 6.004598e-01	ci right 6.196761e-01	k: 6101	n:10000
FAM134A   10000 perm   2 sec   (5902 perm/sec)   p_kst 6.101000e-01   p_cons 9.413000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM134A.3_1668_10000_0.6101_0.9413_1.png
                gene_name: FAM134A
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
FAM155A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.229731e-02	ci left: 5.859043e-01	ci right 6.052400e-01	k: 5956	n:10000
Cons ci ratio: 4.808088e-02	ci left: 3.895819e-01	ci right 4.088768e-01	k: 3992	n:10000
KS ci ratio: 3.926472e-02	ci left: 4.892517e-01	ci right 5.089489e-01	k: 4991	n:10000
FAM155A   10000 perm   2 sec   (6489 perm/sec)   p_kst 4.991000e-01   p_cons 3.992000e-01   p_joint 5.956000e-01

Outputting figure to mutsig2_images.part000000000060/FAM155A.3_1389_10000_0.4991_0.3992_0.5956.png
                gene_name: FAM155A
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 69 percent done.
FAM160A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.144239e-02	ci left: 7.613202e-01	ci right 7.779225e-01	k: 7697	n:10000
KS ci ratio: 2.763342e-02	ci left: 6.586720e-01	ci right 6.772301e-01	k: 6680	n:10000
FAM160A2   10000 perm   2 sec   (5388 perm/sec)   p_kst 6.680000e-01   p_cons 7.697000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM160A2.3_3005_10000_0.668_0.7697_1.png
                gene_name: FAM160A2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
FAM160B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.153682e-02	ci left: 4.611763e-01	ci right 4.808406e-01	k: 4710	n:10000
Cons ci ratio: 4.796083e-02	ci left: 3.907768e-01	ci right 4.100813e-01	k: 4004	n:10000
KS ci ratio: 3.946939e-02	ci left: 4.866526e-01	ci right 5.063494e-01	k: 4965	n:10000
FAM160B1   10000 perm   2 sec   (5624 perm/sec)   p_kst 4.965000e-01   p_cons 4.004000e-01   p_joint 4.710000e-01

Outputting figure to mutsig2_images.part000000000060/FAM160B1.3_2395_10000_0.4965_0.4004_0.471.png
                gene_name: FAM160B1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 73 percent done.
FAM104B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.583216e-02	ci left: 6.880881e-01	ci right 7.061970e-01	k: 6972	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
FAM104B   10000 perm   1 sec   (7155 perm/sec)   p_kst 1   p_cons 6.972000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM104B.2_504_10000_1_0.6972_1.png
                gene_name: FAM104B
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
FAM105B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.331279e-02	ci left: 5.708560e-01	ci right 5.902970e-01	k: 5806	n:10000
KS ci ratio: 1.097315e-02	ci left: 9.221388e-01	ci right 9.324107e-01	k: 9274	n:10000
FAM105B   10000 perm   2 sec   (6366 perm/sec)   p_kst 9.274000e-01   p_cons 5.806000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM105B.2_1087_10000_0.9274_0.5806_1.png
                gene_name: FAM105B
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
FAM107A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.250437e-02	ci left: 9.018575e-01	ci right 9.133038e-01	k: 9077	n:10000
KS ci ratio: 4.669845e-03	ci left: 9.836084e-01	ci right 9.883022e-01	k: 9861	n:10000
FAM107A   10000 perm   1 sec   (6977 perm/sec)   p_kst 9.861000e-01   p_cons 9.077000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM107A.2_447_10000_0.9861_0.9077_1.png
                gene_name: FAM107A
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
FAM108B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.548520e-02	ci left: 4.163805e-01	ci right 4.358625e-01	k: 4261	n:10000
Cons ci ratio: 8.627786e-02	ci left: 1.636672e-01	ci right 1.785250e-01	k: 1710	n:10000
KS ci ratio: 5.384612e-02	ci left: 3.369706e-01	ci right 3.557190e-01	k: 3463	n:10000
FAM108B1   10000 perm   2 sec   (6590 perm/sec)   p_kst 3.463000e-01   p_cons 1.710000e-01   p_joint 4.261000e-01

Outputting figure to mutsig2_images.part000000000060/FAM108B1.2_910_10000_0.3463_0.171_0.4261.png
                gene_name: FAM108B1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 80 percent done.
FAM108C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.724812e-02	ci left: 6.649144e-01	ci right 6.833840e-01	k: 6742	n:10000
Cons ci ratio: 7.830018e-02	ci left: 1.924939e-01	ci right 2.082810e-01	k: 2003	n:10000
KS ci ratio: 3.284991e-02	ci left: 5.776768e-01	ci right 5.970723e-01	k: 5874	n:10000
FAM108C1   10000 perm   2 sec   (6598 perm/sec)   p_kst 5.874000e-01   p_cons 2.003000e-01   p_joint 6.742000e-01

Outputting figure to mutsig2_images.part000000000060/FAM108C1.2_1002_10000_0.5874_0.2003_0.6742.png
                gene_name: FAM108C1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 82 percent done.
FAM109B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.586320e-02	ci left: 5.344770e-01	ci right 5.540972e-01	k: 5443	n:10000
Cons ci ratio: 5.086757e-02	ci left: 3.630124e-01	ci right 3.820619e-01	k: 3725	n:10000
KS ci ratio: 8.397618e-03	ci left: 9.520040e-01	ci right 9.601277e-01	k: 9562	n:10000
FAM109B   10000 perm   2 sec   (6506 perm/sec)   p_kst 9.562000e-01   p_cons 3.725000e-01   p_joint 5.443000e-01

Outputting figure to mutsig2_images.part000000000060/FAM109B.2_784_10000_0.9562_0.3725_0.5443.png
                gene_name: FAM109B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 84 percent done.
FAM111A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.997964e-02	ci left: 7.857354e-01	ci right 8.016931e-01	k: 7938	n:10000
KS ci ratio: 3.831063e-02	ci left: 5.015506e-01	ci right 5.212428e-01	k: 5114	n:10000
FAM111A   10000 perm   2 sec   (5835 perm/sec)   p_kst 5.114000e-01   p_cons 7.938000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM111A.2_1844_10000_0.5114_0.7938_1.png
                gene_name: FAM111A
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
FAM117A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.533157e-02	ci left: 5.418888e-01	ci right 5.614810e-01	k: 5517	n:10000
Cons ci ratio: 5.107490e-02	ci left: 3.611229e-01	ci right 3.801525e-01	k: 3706	n:10000
KS ci ratio: 3.782306e-02	ci left: 5.079524e-01	ci right 5.276372e-01	k: 5178	n:10000
FAM117A   10000 perm   2 sec   (6391 perm/sec)   p_kst 5.178000e-01   p_cons 3.706000e-01   p_joint 5.517000e-01

Outputting figure to mutsig2_images.part000000000060/FAM117A.2_1394_10000_0.5178_0.3706_0.5517.png
                gene_name: FAM117A
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 88 percent done.
FAM117B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
Cons ci ratio: 1.378589e-01	ci left: 6.962154e-02	ci right 8.002777e-02	k: 747	n:10000
KS ci ratio: 7.795978e-02	ci left: 1.938730e-01	ci right 2.097011e-01	k: 2017	n:10000
FAM117B   10000 perm   2 sec   (6119 perm/sec)   p_kst 2.017000e-01   p_cons 7.470000e-02   p_joint 5.170000e-02

Joint ci ratio: 1.337986e-01	ci left: 3.839058e-02	ci right 4.394383e-02	k: 822	n:20000
Cons ci ratio: 9.198045e-02	ci left: 7.940814e-02	ci right 8.711353e-02	k: 1664	n:20000
KS ci ratio: 5.442631e-02	ci left: 2.003140e-01	ci right 2.115716e-01	k: 4118	n:20000
FAM117B   20000 perm   4 sec   (5492 perm/sec)   p_kst 2.059000e-01   p_cons 8.320000e-02   p_joint 4.110000e-02

Joint ci ratio: 1.339189e-01	ci left: 2.590436e-02	ci right 2.965451e-02	k: 832	n:30000
Cons ci ratio: 7.557357e-02	ci left: 7.918129e-02	ci right 8.543321e-02	k: 2468	n:30000
KS ci ratio: 4.461875e-02	ci left: 2.000472e-01	ci right 2.092101e-01	k: 6138	n:30000
FAM117B   30000 perm   6 sec   (5155 perm/sec)   p_kst 2.046000e-01   p_cons 8.226667e-02   p_joint 2.773333e-02

Joint ci ratio: 9.536882e-02	ci left: 3.858909e-02	ci right 4.247797e-02	k: 1620	n:40000
Cons ci ratio: 6.543803e-02	ci left: 7.962469e-02	ci right 8.503613e-02	k: 3292	n:40000
KS ci ratio: 3.869554e-02	ci left: 2.002090e-01	ci right 2.081340e-01	k: 8166	n:40000
FAM117B   40000 perm   8 sec   (4971 perm/sec)   p_kst 2.041500e-01   p_cons 8.230000e-02   p_joint 4.050000e-02

Outputting figure to mutsig2_images.part000000000060/FAM117B.2_1802_40000_0.20415_0.0823_0.0405.png
                gene_name: FAM117B
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 90 percent done.
FAM120C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.445463e-02	ci left: 5.543135e-01	ci right 5.738491e-01	k: 5641	n:10000
KS ci ratio: 3.092731e-02	ci left: 6.066862e-01	ci right 6.258460e-01	k: 6163	n:10000
FAM120C   10000 perm   2 sec   (5503 perm/sec)   p_kst 6.163000e-01   p_cons 5.641000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM120C.2_3377_10000_0.6163_0.5641_1.png
                gene_name: FAM120C
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
FAM124B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
Cons ci ratio: 1.114983e-01	ci left: 1.038342e-01	ci right 1.161941e-01	k: 1099	n:10000
KS ci ratio: 8.853449e-02	ci left: 1.565950e-01	ci right 1.712014e-01	k: 1638	n:10000
FAM124B   10000 perm   2 sec   (6435 perm/sec)   p_kst 1.638000e-01   p_cons 1.099000e-01   p_joint 1.651000e-01

Joint ci ratio: 4.749037e-02	ci left: 2.480279e-01	ci right 2.601437e-01	k: 5081	n:20000
Cons ci ratio: 7.802814e-02	ci left: 1.076609e-01	ci right 1.164522e-01	k: 2240	n:20000
KS ci ratio: 6.241084e-02	ci left: 1.595836e-01	ci right 1.699141e-01	k: 3294	n:20000
FAM124B   20000 perm   4 sec   (5709 perm/sec)   p_kst 1.647000e-01   p_cons 1.120000e-01   p_joint 2.540500e-01

Outputting figure to mutsig2_images.part000000000060/FAM124B.2_1467_20000_0.1647_0.112_0.25405.png
                gene_name: FAM124B
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 94 percent done.
FAM125B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.100668e-02	ci left: 7.686102e-01	ci right 7.850283e-01	k: 7769	n:10000
Cons ci ratio: 3.139339e-02	ci left: 5.995561e-01	ci right 6.187803e-01	k: 6092	n:10000
KS ci ratio: 7.333963e-02	ci left: 2.139851e-01	ci right 2.303771e-01	k: 2221	n:10000
FAM125B   10000 perm   2 sec   (6554 perm/sec)   p_kst 2.221000e-01   p_cons 6.092000e-01   p_joint 7.769000e-01

Outputting figure to mutsig2_images.part000000000060/FAM125B.2_1004_10000_0.2221_0.6092_0.7769.png
                gene_name: FAM125B
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 96 percent done.
FAM134C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.876884e-02	ci left: 6.404584e-01	ci right 6.592543e-01	k: 6499	n:10000
KS ci ratio: 1.416165e-02	ci left: 8.781755e-01	ci right 8.907995e-01	k: 8846	n:10000
FAM134C   10000 perm   2 sec   (6316 perm/sec)   p_kst 8.846000e-01   p_cons 6.499000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000060/FAM134C.2_1437_10000_0.8846_0.6499_1.png
                gene_name: FAM134C
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
FAM151B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.148972e-01	ci left: 2.873209e-02	ci right 3.574387e-02	k: 321	n:10000
Cons ci ratio: 4.705415e-02	ci left: 3.999392e-01	ci right 4.193135e-01	k: 4096	n:10000
KS ci ratio: 2.313764e-01	ci left: 2.466595e-02	ci right 3.121293e-02	k: 278	n:10000
FAM151B   10000 perm   2 sec   (6625 perm/sec)   p_kst 2.780000e-02   p_cons 4.096000e-01   p_joint 3.210000e-02

Joint ci ratio: 1.197522e-01	ci left: 4.779719e-02	ci right 5.393423e-02	k: 1016	n:20000
Cons ci ratio: 3.443062e-02	ci left: 3.864213e-01	ci right 4.000097e-01	k: 7864	n:20000
KS ci ratio: 1.643708e-01	ci left: 2.537344e-02	ci right 2.996526e-02	k: 552	n:20000
FAM151B   20000 perm   3 sec   (5821 perm/sec)   p_kst 2.760000e-02   p_cons 3.932000e-01   p_joint 5.080000e-02

Joint ci ratio: 9.617773e-02	ci left: 4.993781e-02	ci right 5.501597e-02	k: 1573	n:30000
Cons ci ratio: 2.790439e-02	ci left: 3.912242e-01	ci right 4.023291e-01	k: 11903	n:30000
KS ci ratio: 1.328564e-01	ci left: 2.632361e-02	ci right 3.010183e-02	k: 845	n:30000
FAM151B   30000 perm   5 sec   (5463 perm/sec)   p_kst 2.816667e-02   p_cons 3.967667e-01   p_joint 5.243333e-02

Joint ci ratio: 8.193495e-02	ci left: 5.190307e-02	ci right 5.636194e-02	k: 2164	n:40000
Cons ci ratio: 2.423417e-02	ci left: 3.906287e-01	ci right 4.002365e-01	k: 15817	n:40000
KS ci ratio: 1.162291e-01	ci left: 2.604071e-02	ci right 2.927835e-02	k: 1105	n:40000
FAM151B   40000 perm   8 sec   (5209 perm/sec)   p_kst 2.762500e-02   p_cons 3.954250e-01   p_joint 5.410000e-02

Joint ci ratio: 4.079484e-02	ci left: 1.526907e-01	ci right 1.590693e-01	k: 7793	n:50000
Cons ci ratio: 2.165439e-02	ci left: 3.916096e-01	ci right 4.002025e-01	k: 19795	n:50000
KS ci ratio: 1.037082e-01	ci left: 2.633748e-02	ci right 2.923770e-02	k: 1388	n:50000
FAM151B   50000 perm   10 sec   (5087 perm/sec)   p_kst 2.776000e-02   p_cons 3.959000e-01   p_joint 1.558600e-01

Joint ci ratio: 3.055042e-02	ci left: 2.120166e-01	ci right 2.186109e-01	k: 12918	n:60000
Cons ci ratio: 1.976710e-02	ci left: 3.920003e-01	ci right 3.998431e-01	k: 23755	n:60000
KS ci ratio: 9.423134e-02	ci left: 2.671079e-02	ci right 2.936846e-02	k: 1681	n:60000
FAM151B   60000 perm   12 sec   (4870 perm/sec)   p_kst 2.801667e-02   p_cons 3.959167e-01   p_joint 2.153000e-01

Outputting figure to mutsig2_images.part000000000060/FAM151B.2_855_60000_0.028017_0.39592_0.2153.png
                gene_name: FAM151B
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000060
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 60 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9893934: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000061> was used as the working directory.
Started at Sat Oct  6 00:07:17 2012
Results reported at Sat Oct  6 00:27:48 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000061.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000061.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 61  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000061.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1226.59 sec.
    Max Memory :      3649 MB
    Max Swap   :      5947 MB

    Max Processes  :         7
    Max Threads    :        72

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
61
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 61
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 61: processing genes 5410 - 5499
Calculating significance of each gene.
Using projection method.
5410	FAM164A	3.260957e-01
5411	FAM164C	1.895635e-01
5412	FAM165B	1
5413	FAM166A	1
In gene FAM166B the following bins exceed PROBCAP:
    READ-AG-3890	categ 6	N = 671     n = 1	mu =   1.64e-07
5414	FAM166B	2.627608e-01
5415	FAM167A	1.049039e-01
5416	FAM167B	3.714496e-01
5417	FAM168A	1
5418	FAM168B	1
5419	FAM169A	4.006831e-01
5420	FAM169B	2.135079e-01
5421	FAM170A	5.509253e-02
5422	FAM171A1	6.927949e-01
5423	FAM171B	1.967249e-01
5424	FAM172A	5.543769e-01
5425	FAM173A	1
5426	FAM173B	2.174473e-01
5427	FAM174A	7.159468e-01
5428	FAM174B	1
5429	FAM175A	2.785627e-01
5430	FAM175B	7.023691e-01
5431	FAM176A	4.353733e-02
5432	FAM176B	1
5433	FAM177A1	4.867100e-01
5434	FAM177B	1
5435	FAM178A	7.170440e-01
5436	FAM179A	9.038435e-01
5437	FAM179B	7.303618e-01
5438	FAM180A	6.252303e-02
5439	FAM181A	2.276264e-02
5440	FAM183A	1.724361e-01
5441	FAM184A	3.055503e-02
5442	FAM186B	5.848830e-01
5443	FAM187B	7.601258e-01
5444	FAM188A	3.433110e-01
5445	FAM188B	4.727232e-01
5446	FAM189A2	2.951958e-01
5447	FAM189B	7.908180e-01
5448	FAM18A	1
5449	FAM18B	1
5450	FAM18B2	1
5451	FAM190A	8.597145e-02
5452	FAM190B	2.698229e-02
5453	FAM192A	3.349812e-01
5454	FAM193A	9.965487e-01
5455	FAM193B	9.531550e-01
5456	FAM194A	3.547559e-01
5457	FAM195A	1
5458	FAM196A	5.628434e-01
5459	FAM198B	3.245751e-01
5460	FAM199X	3.263411e-01
5461	FAM19A1	2.595291e-01
5462	FAM19A2	1.581510e-01
5463	FAM19A3	1
5464	FAM19A4	1
5465	FAM19A5	1
5466	FAM200A	3.850919e-01
5467	FAM20A	3.239941e-01
5468	FAM20B	5.607278e-01
5469	FAM20C	1
5470	FAM21A	1
5471	FAM21B	7.398284e-01
5472	FAM21C	9.290043e-01
5473	FAM22D	1
5474	FAM22F	1.675731e-03
5475	FAM22G	8.896569e-01
5476	FAM24A	5.625340e-02
5477	FAM24B	1
5478	FAM26D	1
5479	FAM26E	6.628697e-01
5480	FAM26F	2.045207e-01
5481	FAM32A	1
5482	FAM35A	5.148796e-01
5483	FAM36A	1
5484	FAM3A	1
5485	FAM3B	1
5486	FAM3C	1
5487	FAM3D	1
5488	FAM40A	9.344636e-01
5489	FAM40B	3.536663e-01
5490	FAM43A	1
5491	FAM43B	1
5492	FAM45A	5.536989e-01
5493	FAM46A	7.863058e-01
5494	FAM46B	5.864943e-01
5495	FAM46C	8.056767e-01
5496	FAM46D	2.496602e-01
5497	FAM47A	1.096885e-02
5498	FAM47B	2.567933e-02
5499	FAM47C	2.543712e-03
Done

Running MutSig 2:
Scatter job 61: processing genes 5410 - 5499
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FAM184A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.352371e-02	ci left: 1.729074e-01	ci right 1.880792e-01	k: 1804	n:10000
Cons ci ratio: 1.708459e-02	ci left: 8.330730e-01	ci right 8.475282e-01	k: 8404	n:10000
KS ci ratio: 1.364833e-01	ci left: 7.097701e-02	ci right 8.147145e-02	k: 761	n:10000
FAM184A   10000 perm   2 sec   (5031 perm/sec)   p_kst 7.610000e-02   p_cons 8.404000e-01   p_joint 1.804000e-01

Joint ci ratio: 6.769007e-02	ci left: 1.387176e-01	ci right 1.484862e-01	k: 2871	n:20000
Cons ci ratio: 1.166540e-02	ci left: 8.445195e-01	ci right 8.544787e-01	k: 16991	n:20000
KS ci ratio: 9.812251e-02	ci left: 7.026263e-02	ci right 7.756183e-02	k: 1477	n:20000
FAM184A   20000 perm   6 sec   (3079 perm/sec)   p_kst 7.385000e-02   p_cons 8.495500e-01   p_joint 1.435500e-01

Outputting figure to mutsig2_images.part000000000061/FAM184A.16_3495_20000_0.07385_0.84955_0.14355.png
                gene_name: FAM184A
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 2 percent done.
FAM47C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.747163e-02	ci left: 6.612896e-01	ci right 6.798110e-01	k: 6706	n:10000
Cons ci ratio: 1.997354e-02	ci left: 7.858368e-01	ci right 8.017917e-01	k: 7939	n:10000
KS ci ratio: 4.500499e-02	ci left: 4.215643e-01	ci right 4.410757e-01	k: 4313	n:10000
FAM47C   10000 perm   2 sec   (5597 perm/sec)   p_kst 4.313000e-01   p_cons 7.939000e-01   p_joint 6.706000e-01

Outputting figure to mutsig2_images.part000000000061/FAM47C.12_3112_10000_0.4313_0.7939_0.6706.png
                gene_name: FAM47C
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 4 percent done.
FAM47A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.503333e-02	ci left: 7.012988e-01	ci right 7.191786e-01	k: 7103	n:10000
Cons ci ratio: 7.116072e-02	ci left: 2.244469e-01	ci right 2.411090e-01	k: 2327	n:10000
KS ci ratio: 1.211278e-02	ci left: 9.072023e-01	ci right 9.183559e-01	k: 9129	n:10000
FAM47A   10000 perm   2 sec   (6137 perm/sec)   p_kst 9.129000e-01   p_cons 2.327000e-01   p_joint 7.103000e-01

Outputting figure to mutsig2_images.part000000000061/FAM47A.11_2380_10000_0.9129_0.2327_0.7103.png
                gene_name: FAM47A
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 6 percent done.
FAM179B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.324445e-02	ci left: 5.718590e-01	ci right 5.912935e-01	k: 5816	n:10000
Cons ci ratio: 5.028518e-02	ci left: 3.683836e-01	ci right 3.874876e-01	k: 3779	n:10000
KS ci ratio: 4.169550e-02	ci left: 4.592791e-01	ci right 4.789389e-01	k: 4691	n:10000
FAM179B   10000 perm   2 sec   (4892 perm/sec)   p_kst 4.691000e-01   p_cons 3.779000e-01   p_joint 5.816000e-01

Outputting figure to mutsig2_images.part000000000061/FAM179B.10_5239_10000_0.4691_0.3779_0.5816.png
                gene_name: FAM179B
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 8 percent done.
FAM171B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.814999e-02	ci left: 5.036510e-01	ci right 5.233411e-01	k: 5135	n:10000
Cons ci ratio: 2.919994e-02	ci left: 6.336195e-01	ci right 6.524971e-01	k: 6431	n:10000
KS ci ratio: 4.697642e-02	ci left: 4.007361e-01	ci right 4.201161e-01	k: 4104	n:10000
FAM171B   10000 perm   2 sec   (5973 perm/sec)   p_kst 4.104000e-01   p_cons 6.431000e-01   p_joint 5.135000e-01

Outputting figure to mutsig2_images.part000000000061/FAM171B.9_2513_10000_0.4104_0.6431_0.5135.png
                gene_name: FAM171B
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 10 percent done.
FAM22F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.444354e-01	ci left: 6.362530e-02	ci right 7.362777e-02	k: 685	n:10000
Cons ci ratio: 3.616056e-02	ci left: 5.303714e-01	ci right 5.500052e-01	k: 5402	n:10000
KS ci ratio: 2.399155e-01	ci left: 2.287554e-02	ci right 2.920465e-02	k: 259	n:10000
FAM22F   10000 perm   2 sec   (6157 perm/sec)   p_kst 2.590000e-02   p_cons 5.402000e-01   p_joint 6.850000e-02

Joint ci ratio: 1.049536e-01	ci left: 6.176812e-02	ci right 6.865894e-02	k: 1303	n:20000
Cons ci ratio: 2.649888e-02	ci left: 5.154996e-01	ci right 5.293938e-01	k: 10449	n:20000
KS ci ratio: 1.671903e-01	ci left: 2.450986e-02	ci right 2.902913e-02	k: 534	n:20000
FAM22F   20000 perm   4 sec   (5531 perm/sec)   p_kst 2.670000e-02   p_cons 5.224500e-01   p_joint 6.515000e-02

Joint ci ratio: 1.019479e-01	ci left: 4.456738e-02	ci right 4.938751e-02	k: 1408	n:30000
Cons ci ratio: 2.160859e-02	ci left: 5.174294e-01	ci right 5.287661e-01	k: 15693	n:30000
KS ci ratio: 1.355170e-01	ci left: 2.529183e-02	ci right 2.900051e-02	k: 813	n:30000
FAM22F   30000 perm   6 sec   (5296 perm/sec)   p_kst 2.710000e-02   p_cons 5.231000e-01   p_joint 4.693333e-02

Joint ci ratio: 9.176932e-02	ci left: 4.161954e-02	ci right 4.564705e-02	k: 1744	n:40000
Cons ci ratio: 1.869319e-02	ci left: 5.187415e-01	ci right 5.285551e-01	k: 20946	n:40000
KS ci ratio: 1.174358e-01	ci left: 2.550637e-02	ci right 2.871277e-02	k: 1083	n:40000
FAM22F   40000 perm   8 sec   (5144 perm/sec)   p_kst 2.707500e-02   p_cons 5.236500e-01   p_joint 4.360000e-02

Joint ci ratio: 6.676354e-02	ci left: 6.234254e-02	ci right 6.666819e-02	k: 3224	n:50000
Cons ci ratio: 1.674564e-02	ci left: 5.184908e-01	ci right 5.272666e-01	k: 26144	n:50000
KS ci ratio: 1.050380e-01	ci left: 2.567477e-02	ci right 2.854049e-02	k: 1354	n:50000
FAM22F   50000 perm   10 sec   (5017 perm/sec)   p_kst 2.708000e-02   p_cons 5.228800e-01   p_joint 6.448000e-02

Joint ci ratio: 6.072881e-02	ci left: 6.295801e-02	ci right 6.691754e-02	k: 3895	n:60000
Cons ci ratio: 1.532082e-02	ci left: 5.177604e-01	ci right 5.257708e-01	k: 31306	n:60000
KS ci ratio: 9.576528e-02	ci left: 2.586417e-02	ci right 2.848184e-02	k: 1629	n:60000
FAM22F   60000 perm   12 sec   (4860 perm/sec)   p_kst 2.715000e-02   p_cons 5.217667e-01   p_joint 6.491667e-02

Outputting figure to mutsig2_images.part000000000061/FAM22F.9_2299_60000_0.02715_0.52177_0.064917.png
                gene_name: FAM22F
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.067 

Current progress: 12 percent done.
FAM190B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.362865e-02	ci left: 4.368230e-01	ci right 4.564081e-01	k: 4466	n:10000
Cons ci ratio: 5.094380e-02	ci left: 3.623163e-01	ci right 3.813585e-01	k: 3718	n:10000
KS ci ratio: 4.502334e-02	ci left: 4.213649e-01	ci right 4.408752e-01	k: 4311	n:10000
FAM190B   10000 perm   2 sec   (6021 perm/sec)   p_kst 4.311000e-01   p_cons 3.718000e-01   p_joint 4.466000e-01

Outputting figure to mutsig2_images.part000000000061/FAM190B.7_2545_10000_0.4311_0.3718_0.4466.png
                gene_name: FAM190B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 14 percent done.
FAM178A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.242968e-02	ci left: 9.028849e-01	ci right 9.142758e-01	k: 9087	n:10000
Cons ci ratio: 3.821111e-02	ci left: 5.028508e-01	ci right 5.225418e-01	k: 5127	n:10000
KS ci ratio: 3.076409e-02	ci left: 6.091973e-01	ci right 6.283334e-01	k: 6188	n:10000
FAM178A   10000 perm   2 sec   (5255 perm/sec)   p_kst 6.188000e-01   p_cons 5.127000e-01   p_joint 9.087000e-01

Outputting figure to mutsig2_images.part000000000061/FAM178A.6_3677_10000_0.6188_0.5127_0.9087.png
                gene_name: FAM178A
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 16 percent done.
FAM190A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.801579e-01	ci left: 4.111563e-02	ci right 4.935192e-02	k: 451	n:10000
Cons ci ratio: 1.591398e-01	ci left: 5.263174e-02	ci right 6.182831e-02	k: 571	n:10000
KS ci ratio: 2.043162e-01	ci left: 3.186407e-02	ci right 3.920972e-02	k: 354	n:10000
FAM190A   10000 perm   2 sec   (5913 perm/sec)   p_kst 3.540000e-02   p_cons 5.710000e-02   p_joint 4.510000e-02

Joint ci ratio: 3.797244e-01	ci left: 4.295928e-03	ci right 6.351929e-03	k: 105	n:20000
Cons ci ratio: 1.104967e-01	ci left: 5.591985e-02	ci right 6.250903e-02	k: 1183	n:20000
KS ci ratio: 1.387052e-01	ci left: 3.573081e-02	ci right 4.110445e-02	k: 767	n:20000
FAM190A   20000 perm   4 sec   (5319 perm/sec)   p_kst 3.835000e-02   p_cons 5.915000e-02   p_joint 5.250000e-03

Joint ci ratio: 3.697070e-01	ci left: 3.044727e-03	ci right 4.454070e-03	k: 111	n:30000
Cons ci ratio: 8.984505e-02	ci left: 5.697974e-02	ci right 6.237259e-02	k: 1789	n:30000
KS ci ratio: 1.142889e-01	ci left: 3.557287e-02	ci right 3.991724e-02	k: 1131	n:30000
FAM190A   30000 perm   6 sec   (5093 perm/sec)   p_kst 3.770000e-02   p_cons 5.963333e-02   p_joint 3.700000e-03

Joint ci ratio: 1.379036e-01	ci left: 1.843305e-02	ci right 2.118728e-02	k: 791	n:40000
Cons ci ratio: 7.544398e-02	ci left: 6.083476e-02	ci right 6.562889e-02	k: 2528	n:40000
KS ci ratio: 9.611280e-02	ci left: 3.800290e-02	ci right 4.186425e-02	k: 1596	n:40000
FAM190A   40000 perm   8 sec   (4951 perm/sec)   p_kst 3.990000e-02   p_cons 6.320000e-02   p_joint 1.977500e-02

Joint ci ratio: 1.471199e-01	ci left: 1.296919e-02	ci right 1.504780e-02	k: 699	n:50000
Cons ci ratio: 6.710898e-02	ci left: 6.173224e-02	ci right 6.603856e-02	k: 3193	n:50000
KS ci ratio: 8.921028e-02	ci left: 3.551894e-02	ci right 3.885507e-02	k: 1858	n:50000
FAM190A   50000 perm   10 sec   (4830 perm/sec)   p_kst 3.716000e-02   p_cons 6.386000e-02   p_joint 1.398000e-02

Joint ci ratio: 1.129870e-01	ci left: 1.855438e-02	ci right 2.079242e-02	k: 1179	n:60000
Cons ci ratio: 6.141440e-02	ci left: 6.162727e-02	ci right 6.554841e-02	k: 3814	n:60000
KS ci ratio: 8.185389e-02	ci left: 3.530766e-02	ci right 3.833736e-02	k: 2208	n:60000
FAM190A   60000 perm   13 sec   (4725 perm/sec)   p_kst 3.680000e-02   p_cons 6.356667e-02   p_joint 1.965000e-02

Joint ci ratio: 9.174981e-02	ci left: 2.424702e-02	ci right 2.659255e-02	k: 1778	n:70000
Cons ci ratio: 5.669456e-02	ci left: 6.211326e-02	ci right 6.575157e-02	k: 4474	n:70000
KS ci ratio: 7.566276e-02	ci left: 3.552958e-02	ci right 3.833754e-02	k: 2584	n:70000
FAM190A   70000 perm   15 sec   (4628 perm/sec)   p_kst 3.691429e-02   p_cons 6.391429e-02   p_joint 2.540000e-02

Outputting figure to mutsig2_images.part000000000061/FAM190A.6_2771_70000_0.036914_0.063914_0.0254.png
                gene_name: FAM190A
               theta_stop: 0.092 
                    nperm: 70000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.027 

Current progress: 18 percent done.
FAM47B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.102486e-02	ci left: 7.683064e-01	ci right 7.847323e-01	k: 7766	n:10000
Cons ci ratio: 4.997652e-02	ci left: 3.712686e-01	ci right 3.904009e-01	k: 3808	n:10000
KS ci ratio: 1.554170e-02	ci left: 8.573295e-01	ci right 8.708576e-01	k: 8642	n:10000
FAM47B   10000 perm   2 sec   (6635 perm/sec)   p_kst 8.642000e-01   p_cons 3.808000e-01   p_joint 7.766000e-01

Outputting figure to mutsig2_images.part000000000061/FAM47B.6_1942_10000_0.8642_0.3808_0.7766.png
                gene_name: FAM47B
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 20 percent done.
FAM170A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.559827e-01	ci left: 5.474973e-02	ci right 6.410897e-02	k: 593	n:10000
Cons ci ratio: 3.704295e-02	ci left: 5.183588e-01	ci right 5.380248e-01	k: 5282	n:10000
KS ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
FAM170A   10000 perm   2 sec   (6302 perm/sec)   p_kst 1.170000e-02   p_cons 5.282000e-01   p_joint 5.930000e-02

Joint ci ratio: 3.313245e-01	ci left: 5.799905e-03	ci right 8.146877e-03	k: 138	n:20000
Cons ci ratio: 2.624248e-02	ci left: 5.203523e-01	ci right 5.342398e-01	k: 10546	n:20000
KS ci ratio: 2.541997e-01	ci left: 1.025603e-02	ci right 1.328841e-02	k: 234	n:20000
FAM170A   20000 perm   3 sec   (5820 perm/sec)   p_kst 1.170000e-02   p_cons 5.273000e-01   p_joint 6.900000e-03

Joint ci ratio: 1.232207e-01	ci left: 3.061915e-02	ci right 3.467202e-02	k: 978	n:30000
Cons ci ratio: 2.130022e-02	ci left: 5.245997e-01	ci right 5.359277e-01	k: 15908	n:30000
KS ci ratio: 2.028049e-01	ci left: 1.105183e-02	ci right 1.357727e-02	k: 368	n:30000
FAM170A   30000 perm   5 sec   (5621 perm/sec)   p_kst 1.226667e-02   p_cons 5.302667e-01   p_joint 3.260000e-02

Joint ci ratio: 1.336611e-01	ci left: 1.964140e-02	ci right 2.247873e-02	k: 841	n:40000
Cons ci ratio: 1.849833e-02	ci left: 5.239688e-01	ci right 5.337770e-01	k: 21155	n:40000
KS ci ratio: 1.767291e-01	ci left: 1.107550e-02	ci right 1.324619e-02	k: 485	n:40000
FAM170A   40000 perm   7 sec   (5469 perm/sec)   p_kst 1.212500e-02   p_cons 5.288750e-01   p_joint 2.102500e-02

Joint ci ratio: 1.327508e-01	ci left: 1.600109e-02	ci right 1.829546e-02	k: 856	n:50000
Cons ci ratio: 1.652015e-02	ci left: 5.252535e-01	ci right 5.340231e-01	k: 26482	n:50000
KS ci ratio: 1.576127e-01	ci left: 1.125617e-02	ci right 1.320107e-02	k: 610	n:50000
FAM170A   50000 perm   9 sec   (5344 perm/sec)   p_kst 1.220000e-02   p_cons 5.296400e-01   p_joint 1.712000e-02

Joint ci ratio: 1.067415e-01	ci left: 2.080868e-02	ci right 2.317121e-02	k: 1318	n:60000
Cons ci ratio: 1.506893e-02	ci left: 5.260301e-01	ci right 5.340337e-01	k: 31802	n:60000
KS ci ratio: 1.437019e-01	ci left: 1.136908e-02	ci right 1.314523e-02	k: 734	n:60000
FAM170A   60000 perm   11 sec   (5233 perm/sec)   p_kst 1.223333e-02   p_cons 5.300333e-01   p_joint 2.196667e-02

Joint ci ratio: 1.041309e-01	ci left: 1.880862e-02	ci right 2.088860e-02	k: 1388	n:70000
Cons ci ratio: 1.399937e-02	ci left: 5.246080e-01	ci right 5.320182e-01	k: 36982	n:70000
KS ci ratio: 1.323796e-01	ci left: 1.155188e-02	ci right 1.320320e-02	k: 865	n:70000
FAM170A   70000 perm   14 sec   (5128 perm/sec)   p_kst 1.235714e-02   p_cons 5.283143e-01   p_joint 1.982857e-02

Joint ci ratio: 9.408609e-02	ci left: 2.023736e-02	ci right 2.224757e-02	k: 1698	n:80000
Cons ci ratio: 1.307036e-02	ci left: 5.257964e-01	ci right 5.327265e-01	k: 42341	n:80000
KS ci ratio: 1.231833e-01	ci left: 1.172946e-02	ci right 1.328119e-02	k: 999	n:80000
FAM170A   80000 perm   16 sec   (5026 perm/sec)   p_kst 1.248750e-02   p_cons 5.292625e-01   p_joint 2.122500e-02

Joint ci ratio: 8.916812e-02	ci left: 2.008402e-02	ci right 2.196925e-02	k: 1891	n:90000
Cons ci ratio: 1.230355e-02	ci left: 5.267773e-01	ci right 5.333097e-01	k: 47704	n:90000
KS ci ratio: 1.110051e-01	ci left: 1.290748e-02	ci right 1.443521e-02	k: 1229	n:90000
FAM170A   90000 perm   18 sec   (4934 perm/sec)   p_kst 1.365556e-02   p_cons 5.300444e-01   p_joint 2.101111e-02

Joint ci ratio: 6.397134e-02	ci left: 3.503108e-02	ci right 3.735592e-02	k: 3618	n:100000
Cons ci ratio: 1.165450e-02	ci left: 5.277011e-01	ci right 5.338972e-01	k: 53080	n:100000
KS ci ratio: 1.051399e-01	ci left: 1.298867e-02	ci right 1.443974e-02	k: 1370	n:100000
FAM170A   100000 perm   21 sec   (4844 perm/sec)   p_kst 1.370000e-02   p_cons 5.308000e-01   p_joint 3.618000e-02

Joint ci ratio: 6.682157e-02	ci left: 2.932172e-02	ci right 3.135768e-02	k: 3336	n:110000
Cons ci ratio: 1.112249e-02	ci left: 5.273817e-01	ci right 5.332894e-01	k: 58337	n:110000
KS ci ratio: 1.003178e-01	ci left: 1.300363e-02	ci right 1.438582e-02	k: 1505	n:110000
FAM170A   110000 perm   23 sec   (4758 perm/sec)   p_kst 1.368182e-02   p_cons 5.303364e-01   p_joint 3.032727e-02

Joint ci ratio: 6.831119e-02	ci left: 2.579520e-02	ci right 2.762777e-02	k: 3204	n:120000
Cons ci ratio: 1.065048e-02	ci left: 5.274380e-01	ci right 5.330938e-01	k: 63632	n:120000
KS ci ratio: 9.595558e-02	ci left: 1.305805e-02	ci right 1.438227e-02	k: 1645	n:120000
FAM170A   120000 perm   26 sec   (4673 perm/sec)   p_kst 1.370833e-02   p_cons 5.302667e-01   p_joint 2.670000e-02

Outputting figure to mutsig2_images.part000000000061/FAM170A.5_1006_120000_0.013708_0.53027_0.0267.png
                gene_name: FAM170A
               theta_stop: 0.096 
                    nperm: 120000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 22 percent done.
FAM171A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.246886e-02	ci left: 7.441210e-01	ci right 7.611316e-01	k: 7527	n:10000
KS ci ratio: 1.131927e-02	ci left: 9.177038e-01	ci right 9.282482e-01	k: 9231	n:10000
FAM171A1   10000 perm   2 sec   (5990 perm/sec)   p_kst 9.231000e-01   p_cons 7.527000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM171A1.5_2705_10000_0.9231_0.7527_1.png
                gene_name: FAM171A1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
FAM186B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.633357e-02	ci left: 8.449897e-01	ci right 8.590046e-01	k: 8521	n:10000
Cons ci ratio: 1.783012e-02	ci left: 8.210683e-01	ci right 8.359398e-01	k: 8286	n:10000
KS ci ratio: 2.954424e-02	ci left: 6.281901e-01	ci right 6.471296e-01	k: 6377	n:10000
FAM186B   10000 perm   2 sec   (5964 perm/sec)   p_kst 6.377000e-01   p_cons 8.286000e-01   p_joint 8.521000e-01

Outputting figure to mutsig2_images.part000000000061/FAM186B.5_2710_10000_0.6377_0.8286_0.8521.png
                gene_name: FAM186B
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 27 percent done.
FAM194A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.495584e-02	ci left: 1.386431e-01	ci right 1.525641e-01	k: 1455	n:10000
Cons ci ratio: 8.205735e-03	ci left: 9.539874e-01	ci right 9.619430e-01	k: 9581	n:10000
KS ci ratio: 1.383594e-01	ci left: 6.913757e-02	ci right 7.951204e-02	k: 742	n:10000
FAM194A   10000 perm   2 sec   (6355 perm/sec)   p_kst 7.420000e-02   p_cons 9.581000e-01   p_joint 1.455000e-01

Joint ci ratio: 5.919110e-02	ci left: 1.744997e-01	ci right 1.851936e-01	k: 3596	n:20000
Cons ci ratio: 5.885512e-03	ci left: 9.539933e-01	ci right 9.596729e-01	k: 19138	n:20000
KS ci ratio: 9.377357e-02	ci left: 7.656991e-02	ci right 8.415262e-02	k: 1606	n:20000
FAM194A   20000 perm   4 sec   (5689 perm/sec)   p_kst 8.030000e-02   p_cons 9.569000e-01   p_joint 1.798000e-01

Outputting figure to mutsig2_images.part000000000061/FAM194A.5_2048_20000_0.0803_0.9569_0.1798.png
                gene_name: FAM194A
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 29 percent done.
FAM198B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.763285e-02	ci left: 3.940629e-01	ci right 4.133932e-01	k: 4037	n:10000
Cons ci ratio: 1.220386e-02	ci left: 9.059684e-01	ci right 9.171905e-01	k: 9117	n:10000
KS ci ratio: 6.824099e-02	ci left: 2.395602e-01	ci right 2.565868e-01	k: 2480	n:10000
FAM198B   10000 perm   1 sec   (6811 perm/sec)   p_kst 2.480000e-01   p_cons 9.117000e-01   p_joint 4.037000e-01

Outputting figure to mutsig2_images.part000000000061/FAM198B.5_1681_10000_0.248_0.9117_0.4037.png
                gene_name: FAM198B
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 31 percent done.
FAM21C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.785097e-01	ci left: 4.188120e-02	ci right 5.018585e-02	k: 459	n:10000
Cons ci ratio: 4.835253e-02	ci left: 3.868937e-01	ci right 4.061666e-01	k: 3965	n:10000
KS ci ratio: 1.958891e-01	ci left: 3.471871e-02	ci right 4.235312e-02	k: 384	n:10000
FAM21C   10000 perm   2 sec   (5864 perm/sec)   p_kst 3.840000e-02   p_cons 3.965000e-01   p_joint 4.590000e-02

Joint ci ratio: 1.060895e-01	ci left: 6.050025e-02	ci right 6.732720e-02	k: 1277	n:20000
Cons ci ratio: 3.438737e-02	ci left: 3.870194e-01	ci right 4.006114e-01	k: 7876	n:20000
KS ci ratio: 1.417063e-01	ci left: 3.423328e-02	ci right 3.950247e-02	k: 736	n:20000
FAM21C   20000 perm   4 sec   (5299 perm/sec)   p_kst 3.680000e-02   p_cons 3.938000e-01   p_joint 6.385000e-02

Joint ci ratio: 7.986470e-02	ci left: 7.135698e-02	ci right 7.732577e-02	k: 2229	n:30000
Cons ci ratio: 2.825727e-02	ci left: 3.852395e-01	ci right 3.963150e-01	k: 11723	n:30000
KS ci ratio: 1.162782e-01	ci left: 3.437385e-02	ci right 3.864985e-02	k: 1094	n:30000
FAM21C   30000 perm   6 sec   (5071 perm/sec)   p_kst 3.646667e-02   p_cons 3.907667e-01   p_joint 7.430000e-02

Joint ci ratio: 7.806378e-02	ci left: 5.698044e-02	ci right 6.163379e-02	k: 2371	n:40000
Cons ci ratio: 2.436773e-02	ci left: 3.880095e-01	ci right 3.976061e-01	k: 15712	n:40000
KS ci ratio: 1.007002e-01	ci left: 3.465905e-02	ci right 3.835863e-02	k: 1459	n:40000
FAM21C   40000 perm   8 sec   (4932 perm/sec)   p_kst 3.647500e-02   p_cons 3.928000e-01   p_joint 5.927500e-02

Joint ci ratio: 6.937589e-02	ci left: 5.793396e-02	ci right 6.211730e-02	k: 3000	n:50000
Cons ci ratio: 2.176707e-02	ci left: 3.891344e-01	ci right 3.977180e-01	k: 19671	n:50000
KS ci ratio: 9.012050e-02	ci left: 3.481451e-02	ci right 3.811959e-02	k: 1822	n:50000
FAM21C   50000 perm   10 sec   (4819 perm/sec)   p_kst 3.644000e-02   p_cons 3.934200e-01   p_joint 6.000000e-02

Outputting figure to mutsig2_images.part000000000061/FAM21C.5_4083_50000_0.03644_0.39342_0.06.png
                gene_name: FAM21C
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 33 percent done.
FAM40B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.737275e-01	ci left: 5.196070e-03	ci right 8.501060e-03	k: 67	n:10000
Cons ci ratio: 6.749929e-02	ci left: 2.436126e-01	ci right 2.607320e-01	k: 2521	n:10000
KS ci ratio: 8.544729e-01	ci left: 1.222067e-03	ci right 3.087156e-03	k: 20	n:10000
FAM40B   10000 perm   1 sec   (6813 perm/sec)   p_kst 2.000000e-03   p_cons 2.521000e-01   p_joint 6.700000e-03

Joint ci ratio: 3.970395e-01	ci left: 3.889694e-03	ci right 5.858508e-03	k: 96	n:20000
Cons ci ratio: 4.745907e-02	ci left: 2.482759e-01	ci right 2.603956e-01	k: 5086	n:20000
KS ci ratio: 6.352878e-01	ci left: 1.302895e-03	ci right 2.549089e-03	k: 37	n:20000
FAM40B   20000 perm   3 sec   (6064 perm/sec)   p_kst 1.850000e-03   p_cons 2.543000e-01   p_joint 4.800000e-03

Joint ci ratio: 3.994361e-01	ci left: 2.562755e-03	ci right 3.869722e-03	k: 95	n:30000
Cons ci ratio: 3.853186e-02	ci left: 2.515323e-01	ci right 2.614482e-01	k: 7694	n:30000
KS ci ratio: 5.539003e-01	ci left: 1.208586e-03	ci right 2.158785e-03	k: 49	n:30000
FAM40B   30000 perm   5 sec   (5796 perm/sec)   p_kst 1.633333e-03   p_cons 2.564667e-01   p_joint 3.166667e-03

Joint ci ratio: 1.789794e-01	ci left: 1.078871e-02	ci right 1.293303e-02	k: 473	n:40000
Cons ci ratio: 3.343975e-02	ci left: 2.514053e-01	ci right 2.599802e-01	k: 10227	n:40000
KS ci ratio: 4.749597e-01	ci left: 1.298331e-03	ci right 2.126710e-03	k: 67	n:40000
FAM40B   40000 perm   7 sec   (5614 perm/sec)   p_kst 1.675000e-03   p_cons 2.556750e-01   p_joint 1.182500e-02

Joint ci ratio: 1.754940e-01	ci left: 9.012485e-03	ci right 1.076512e-02	k: 493	n:50000
Cons ci ratio: 2.983889e-02	ci left: 2.527560e-01	ci right 2.604322e-01	k: 12829	n:50000
KS ci ratio: 4.351983e-01	ci left: 1.268898e-03	ci right 1.990949e-03	k: 80	n:50000
FAM40B   50000 perm   9 sec   (5469 perm/sec)   p_kst 1.600000e-03   p_cons 2.565800e-01   p_joint 9.860000e-03

Joint ci ratio: 2.300303e-01	ci left: 4.262702e-03	ci right 5.386019e-03	k: 288	n:60000
Cons ci ratio: 2.727839e-02	ci left: 2.525447e-01	ci right 2.595456e-01	k: 15362	n:60000
KS ci ratio: 4.018617e-01	ci left: 1.266206e-03	ci right 1.916867e-03	k: 94	n:60000
FAM40B   60000 perm   11 sec   (5318 perm/sec)   p_kst 1.566667e-03   p_cons 2.560333e-01   p_joint 4.800000e-03

Joint ci ratio: 2.221459e-01	ci left: 3.936682e-03	ci right 4.933656e-03	k: 309	n:70000
Cons ci ratio: 2.523266e-02	ci left: 2.531399e-01	ci right 2.596232e-01	k: 17946	n:70000
KS ci ratio: 3.575360e-01	ci left: 1.408504e-03	ci right 2.033963e-03	k: 119	n:70000
FAM40B   70000 perm   13 sec   (5197 perm/sec)   p_kst 1.700000e-03   p_cons 2.563714e-01   p_joint 4.414286e-03

Joint ci ratio: 2.087733e-01	ci left: 3.929461e-03	ci right 4.857046e-03	k: 350	n:80000
Cons ci ratio: 2.365251e-02	ci left: 2.525551e-01	ci right 2.586126e-01	k: 20446	n:80000
KS ci ratio: 3.370930e-01	ci left: 1.403598e-03	ci right 1.983501e-03	k: 134	n:80000
FAM40B   80000 perm   16 sec   (5084 perm/sec)   p_kst 1.675000e-03   p_cons 2.555750e-01   p_joint 4.375000e-03

Joint ci ratio: 2.811346e-01	ci left: 1.852821e-03	ci right 2.468861e-03	k: 193	n:90000
Cons ci ratio: 2.234605e-02	ci left: 2.519445e-01	ci right 2.576491e-01	k: 22931	n:90000
KS ci ratio: 3.135773e-01	ci left: 1.461951e-03	ci right 2.015403e-03	k: 155	n:90000
FAM40B   90000 perm   18 sec   (4964 perm/sec)   p_kst 1.722222e-03   p_cons 2.547889e-01   p_joint 2.144444e-03

Joint ci ratio: 1.463836e-01	ci left: 6.598581e-03	ci right 7.650311e-03	k: 711	n:100000
Cons ci ratio: 2.119207e-02	ci left: 2.522210e-01	ci right 2.576333e-01	k: 25492	n:100000
KS ci ratio: 2.927308e-01	ci left: 1.528290e-03	ci right 2.061274e-03	k: 178	n:100000
FAM40B   100000 perm   21 sec   (4840 perm/sec)   p_kst 1.780000e-03   p_cons 2.549200e-01   p_joint 7.110000e-03

Joint ci ratio: 1.476892e-01	ci left: 5.893473e-03	ci right 6.841927e-03	k: 699	n:110000
Cons ci ratio: 2.020455e-02	ci left: 2.523718e-01	ci right 2.575320e-01	k: 28044	n:110000
KS ci ratio: 2.841397e-01	ci left: 1.482116e-03	ci right 1.981108e-03	k: 189	n:110000
FAM40B   110000 perm   23 sec   (4742 perm/sec)   p_kst 1.718182e-03   p_cons 2.549455e-01   p_joint 6.354545e-03

Joint ci ratio: 1.467825e-01	ci left: 5.474499e-03	ci right 6.349638e-03	k: 708	n:120000
Cons ci ratio: 1.934292e-02	ci left: 2.525108e-01	ci right 2.574511e-01	k: 30597	n:120000
KS ci ratio: 2.696254e-01	ci left: 1.521469e-03	ci right 2.003122e-03	k: 210	n:120000
FAM40B   120000 perm   26 sec   (4649 perm/sec)   p_kst 1.750000e-03   p_cons 2.549750e-01   p_joint 5.900000e-03

Joint ci ratio: 1.557971e-01	ci left: 4.468491e-03	ci right 5.230777e-03	k: 629	n:130000
Cons ci ratio: 1.855471e-02	ci left: 2.532075e-01	ci right 2.579573e-01	k: 33225	n:130000
KS ci ratio: 2.616893e-01	ci left: 1.497772e-03	ci right 1.955683e-03	k: 223	n:130000
FAM40B   130000 perm   28 sec   (4580 perm/sec)   p_kst 1.715385e-03   p_cons 2.555769e-01   p_joint 4.838462e-03

Joint ci ratio: 2.005535e-01	ci left: 2.448525e-03	ci right 3.000963e-03	k: 380	n:140000
Cons ci ratio: 1.790290e-02	ci left: 2.528038e-01	ci right 2.573777e-01	k: 35712	n:140000
KS ci ratio: 2.549542e-01	ci left: 1.470950e-03	ci right 1.907247e-03	k: 235	n:140000
FAM40B   140000 perm   31 sec   (4507 perm/sec)   p_kst 1.678571e-03   p_cons 2.550857e-01   p_joint 2.714286e-03

Joint ci ratio: 2.072207e-01	ci left: 2.133420e-03	ci right 2.632793e-03	k: 356	n:150000
Cons ci ratio: 1.731192e-02	ci left: 2.525298e-01	ci right 2.569464e-01	k: 38210	n:150000
KS ci ratio: 2.502342e-01	ci left: 1.429085e-03	ci right 1.843894e-03	k: 244	n:150000
FAM40B   150000 perm   34 sec   (4441 perm/sec)   p_kst 1.626667e-03   p_cons 2.547333e-01   p_joint 2.373333e-03

Joint ci ratio: 2.041084e-01	ci left: 2.065283e-03	ci right 2.540540e-03	k: 367	n:160000
Cons ci ratio: 1.676038e-02	ci left: 2.526413e-01	ci right 2.569176e-01	k: 40764	n:160000
KS ci ratio: 2.443257e-01	ci left: 1.410118e-03	ci right 1.808291e-03	k: 256	n:160000
FAM40B   160000 perm   37 sec   (4373 perm/sec)   p_kst 1.600000e-03   p_cons 2.547750e-01   p_joint 2.293750e-03

Joint ci ratio: 1.982685e-01	ci left: 2.066689e-03	ci right 2.527018e-03	k: 389	n:170000
Cons ci ratio: 1.626949e-02	ci left: 2.524835e-01	ci right 2.566308e-01	k: 43274	n:170000
KS ci ratio: 2.357640e-01	ci left: 1.432217e-03	ci right 1.820391e-03	k: 275	n:170000
FAM40B   170000 perm   39 sec   (4306 perm/sec)   p_kst 1.617647e-03   p_cons 2.545529e-01   p_joint 2.288235e-03

Joint ci ratio: 1.980269e-01	ci left: 1.957142e-03	ci right 2.392474e-03	k: 390	n:180000
Cons ci ratio: 1.581957e-02	ci left: 2.523393e-01	ci right 2.563686e-01	k: 45783	n:180000
KS ci ratio: 2.316096e-01	ci left: 1.404950e-03	ci right 1.778064e-03	k: 285	n:180000
FAM40B   180000 perm   42 sec   (4241 perm/sec)   p_kst 1.583333e-03   p_cons 2.543500e-01   p_joint 2.166667e-03

Joint ci ratio: 2.024982e-01	ci left: 1.769129e-03	ci right 2.172625e-03	k: 373	n:190000
Cons ci ratio: 1.540759e-02	ci left: 2.521488e-01	ci right 2.560692e-01	k: 48280	n:190000
KS ci ratio: 2.261420e-01	ci left: 1.400465e-03	ci right 1.762384e-03	k: 299	n:190000
FAM40B   190000 perm   46 sec   (4175 perm/sec)   p_kst 1.573684e-03   p_cons 2.541053e-01   p_joint 1.963158e-03

Joint ci ratio: 1.995888e-01	ci left: 1.732900e-03	ci right 2.121763e-03	k: 384	n:200000
Cons ci ratio: 1.500087e-02	ci left: 2.526170e-01	ci right 2.564401e-01	k: 50905	n:200000
KS ci ratio: 2.206924e-01	ci left: 1.401245e-03	ci right 1.753455e-03	k: 314	n:200000
FAM40B   200000 perm   49 sec   (4112 perm/sec)   p_kst 1.570000e-03   p_cons 2.545250e-01   p_joint 1.920000e-03

Joint ci ratio: 1.958128e-01	ci left: 1.718273e-03	ci right 2.095688e-03	k: 399	n:210000
Cons ci ratio: 1.462142e-02	ci left: 2.531273e-01	ci right 2.568604e-01	k: 53548	n:210000
KS ci ratio: 2.159467e-01	ci left: 1.397540e-03	ci right 1.740264e-03	k: 328	n:210000
FAM40B   210000 perm   52 sec   (4045 perm/sec)   p_kst 1.561905e-03   p_cons 2.549905e-01   p_joint 1.900000e-03

Joint ci ratio: 2.090667e-01	ci left: 1.428697e-03	ci right 1.766471e-03	k: 350	n:220000
Cons ci ratio: 1.426494e-02	ci left: 2.537102e-01	ci right 2.573599e-01	k: 56217	n:220000
KS ci ratio: 2.096658e-01	ci left: 1.420082e-03	ci right 1.756905e-03	k: 348	n:220000
FAM40B   220000 perm   55 sec   (3986 perm/sec)   p_kst 1.581818e-03   p_cons 2.555318e-01   p_joint 1.590909e-03

Joint ci ratio: 2.053007e-01	ci left: 1.420169e-03	ci right 1.749119e-03	k: 363	n:230000
Cons ci ratio: 1.395958e-02	ci left: 2.535276e-01	ci right 2.570959e-01	k: 58721	n:230000
KS ci ratio: 2.058680e-01	ci left: 1.411920e-03	ci right 1.739977e-03	k: 361	n:230000
FAM40B   230000 perm   59 sec   (3929 perm/sec)   p_kst 1.569565e-03   p_cons 2.553087e-01   p_joint 1.578261e-03

Joint ci ratio: 1.370780e-01	ci left: 3.162997e-03	ci right 3.632455e-03	k: 814	n:240000
Cons ci ratio: 1.366388e-02	ci left: 2.536146e-01	ci right 2.571079e-01	k: 61286	n:240000
KS ci ratio: 2.009321e-01	ci left: 1.424272e-03	ci right 1.746291e-03	k: 379	n:240000
FAM40B   240000 perm   62 sec   (3876 perm/sec)   p_kst 1.579167e-03   p_cons 2.553583e-01   p_joint 3.391667e-03

Joint ci ratio: 1.677309e-01	ci left: 1.997137e-03	ci right 2.366556e-03	k: 544	n:250000
Cons ci ratio: 1.337904e-02	ci left: 2.538990e-01	ci right 2.573227e-01	k: 63902	n:250000
KS ci ratio: 1.965825e-01	ci left: 1.431917e-03	ci right 1.747818e-03	k: 396	n:250000
FAM40B   250000 perm   65 sec   (3823 perm/sec)   p_kst 1.584000e-03   p_cons 2.556080e-01   p_joint 2.176000e-03

Joint ci ratio: 1.165145e-01	ci left: 4.081978e-03	ci right 4.590707e-03	k: 1126	n:260000
Cons ci ratio: 1.312070e-02	ci left: 2.538896e-01	ci right 2.572466e-01	k: 66447	n:260000
KS ci ratio: 1.920396e-01	ci left: 1.446367e-03	ci right 1.757220e-03	k: 415	n:260000
FAM40B   260000 perm   69 sec   (3771 perm/sec)   p_kst 1.596154e-03   p_cons 2.555654e-01   p_joint 4.330769e-03

Joint ci ratio: 1.138173e-01	ci left: 4.125037e-03	ci right 4.626434e-03	k: 1180	n:270000
Cons ci ratio: 1.287376e-02	ci left: 2.539702e-01	ci right 2.572646e-01	k: 69016	n:270000
KS ci ratio: 1.880144e-01	ci left: 1.456294e-03	ci right 1.761972e-03	k: 433	n:270000
FAM40B   270000 perm   73 sec   (3718 perm/sec)   p_kst 1.603704e-03   p_cons 2.556148e-01   p_joint 4.370370e-03

Joint ci ratio: 1.144115e-01	ci left: 3.936059e-03	ci right 4.417150e-03	k: 1168	n:280000
Cons ci ratio: 1.263837e-02	ci left: 2.541027e-01	ci right 2.573381e-01	k: 71601	n:280000
KS ci ratio: 1.834210e-01	ci left: 1.479204e-03	ci right 1.781262e-03	k: 455	n:280000
FAM40B   280000 perm   76 sec   (3670 perm/sec)   p_kst 1.625000e-03   p_cons 2.557179e-01   p_joint 4.171429e-03

Joint ci ratio: 1.160764e-01	ci left: 3.689792e-03	ci right 4.147795e-03	k: 1135	n:290000
Cons ci ratio: 1.242150e-02	ci left: 2.540407e-01	ci right 2.572194e-01	k: 74132	n:290000
KS ci ratio: 1.806692e-01	ci left: 1.474272e-03	ci right 1.770313e-03	k: 469	n:290000
FAM40B   290000 perm   80 sec   (3624 perm/sec)   p_kst 1.617241e-03   p_cons 2.556276e-01   p_joint 3.913793e-03

Joint ci ratio: 1.147730e-01	ci left: 3.650960e-03	ci right 4.098708e-03	k: 1161	n:300000
Cons ci ratio: 1.221137e-02	ci left: 2.541097e-01	ci right 2.572350e-01	k: 76701	n:300000
KS ci ratio: 1.784073e-01	ci left: 1.463332e-03	ci right 1.753099e-03	k: 481	n:300000
FAM40B   300000 perm   84 sec   (3577 perm/sec)   p_kst 1.603333e-03   p_cons 2.556700e-01   p_joint 3.870000e-03

Joint ci ratio: 9.586746e-02	ci left: 5.107250e-03	ci right 5.624643e-03	k: 1662	n:310000
Cons ci ratio: 1.201562e-02	ci left: 2.540459e-01	ci right 2.571200e-01	k: 79230	n:310000
KS ci ratio: 1.748162e-01	ci left: 1.477793e-03	ci right 1.763912e-03	k: 501	n:310000
FAM40B   310000 perm   88 sec   (3530 perm/sec)   p_kst 1.616129e-03   p_cons 2.555806e-01   p_joint 5.361290e-03

Joint ci ratio: 1.017286e-01	ci left: 4.383712e-03	ci right 4.856578e-03	k: 1477	n:320000
Cons ci ratio: 1.181812e-02	ci left: 2.543357e-01	ci right 2.573624e-01	k: 81871	n:320000
KS ci ratio: 1.727646e-01	ci left: 1.467480e-03	ci right 1.747920e-03	k: 513	n:320000
FAM40B   320000 perm   92 sec   (3489 perm/sec)   p_kst 1.603125e-03   p_cons 2.558469e-01   p_joint 4.615625e-03

Joint ci ratio: 1.005802e-01	ci left: 4.351292e-03	ci right 4.815050e-03	k: 1511	n:330000
Cons ci ratio: 1.164023e-02	ci left: 2.542757e-01	ci right 2.572559e-01	k: 84402	n:330000
KS ci ratio: 1.699763e-01	ci left: 1.472317e-03	ci right 1.748675e-03	k: 530	n:330000
FAM40B   330000 perm   96 sec   (3449 perm/sec)   p_kst 1.606061e-03   p_cons 2.557636e-01   p_joint 4.578788e-03

Joint ci ratio: 9.905226e-02	ci left: 4.358098e-03	ci right 4.815115e-03	k: 1558	n:340000
Cons ci ratio: 1.147315e-02	ci left: 2.541197e-01	ci right 2.570550e-01	k: 86899	n:340000
KS ci ratio: 1.676255e-01	ci left: 1.471267e-03	ci right 1.743223e-03	k: 545	n:340000
FAM40B   340000 perm   100 sec   (3408 perm/sec)   p_kst 1.602941e-03   p_cons 2.555853e-01   p_joint 4.582353e-03

Joint ci ratio: 9.740932e-02	ci left: 4.381292e-03	ci right 4.832685e-03	k: 1611	n:350000
Cons ci ratio: 1.130983e-02	ci left: 2.540814e-01	ci right 2.569741e-01	k: 89434	n:350000
KS ci ratio: 1.647822e-01	ci left: 1.481259e-03	ci right 1.749958e-03	k: 564	n:350000
FAM40B   350000 perm   104 sec   (3368 perm/sec)   p_kst 1.611429e-03   p_cons 2.555257e-01   p_joint 4.602857e-03

Joint ci ratio: 9.744595e-02	ci left: 4.256866e-03	ci right 4.695614e-03	k: 1610	n:360000
Cons ci ratio: 1.114857e-02	ci left: 2.542062e-01	ci right 2.570589e-01	k: 92027	n:360000
KS ci ratio: 1.626377e-01	ci left: 1.480073e-03	ci right 1.744720e-03	k: 579	n:360000
FAM40B   360000 perm   108 sec   (3328 perm/sec)   p_kst 1.608333e-03   p_cons 2.556306e-01   p_joint 4.472222e-03

Joint ci ratio: 1.063754e-01	ci left: 3.462179e-03	ci right 3.853766e-03	k: 1352	n:370000
Cons ci ratio: 1.099527e-02	ci left: 2.542814e-01	ci right 2.570954e-01	k: 94604	n:370000
KS ci ratio: 1.608458e-01	ci left: 1.473783e-03	ci right 1.734122e-03	k: 592	n:370000
FAM40B   370000 perm   112 sec   (3290 perm/sec)   p_kst 1.600000e-03   p_cons 2.556865e-01   p_joint 3.654054e-03

Joint ci ratio: 1.068571e-01	ci left: 3.340321e-03	ci right 3.719943e-03	k: 1340	n:380000
Cons ci ratio: 1.084783e-02	ci left: 2.543634e-01	ci right 2.571403e-01	k: 97185	n:380000
KS ci ratio: 1.591119e-01	ci left: 1.467840e-03	ci right 1.724067e-03	k: 605	n:380000
FAM40B   380000 perm   117 sec   (3253 perm/sec)   p_kst 1.592105e-03   p_cons 2.557500e-01   p_joint 3.526316e-03

Joint ci ratio: 1.054125e-01	ci left: 3.347026e-03	ci right 3.721949e-03	k: 1377	n:390000
Cons ci ratio: 1.071308e-02	ci left: 2.541957e-01	ci right 2.569361e-01	k: 99670	n:390000
KS ci ratio: 1.570521e-01	ci left: 1.469606e-03	ci right 1.722507e-03	k: 621	n:390000
FAM40B   390000 perm   121 sec   (3212 perm/sec)   p_kst 1.592308e-03   p_cons 2.555641e-01   p_joint 3.530769e-03

Joint ci ratio: 1.038778e-01	ci left: 3.363169e-03	ci right 3.734080e-03	k: 1418	n:400000
Cons ci ratio: 1.057969e-02	ci left: 2.541639e-01	ci right 2.568696e-01	k: 102206	n:400000
KS ci ratio: 1.551921e-01	ci left: 1.468901e-03	ci right 1.718408e-03	k: 636	n:400000
FAM40B   400000 perm   127 sec   (3159 perm/sec)   p_kst 1.590000e-03   p_cons 2.555150e-01   p_joint 3.545000e-03

Joint ci ratio: 1.064339e-01	ci left: 3.122002e-03	ci right 3.475319e-03	k: 1351	n:410000
Cons ci ratio: 1.045397e-02	ci left: 2.540316e-01	ci right 2.567036e-01	k: 104700	n:410000
KS ci ratio: 1.537514e-01	ci left: 1.461210e-03	ci right 1.706895e-03	k: 648	n:410000
FAM40B   410000 perm   131 sec   (3122 perm/sec)   p_kst 1.580488e-03   p_cons 2.553659e-01   p_joint 3.295122e-03

Joint ci ratio: 1.052727e-01	ci left: 3.117206e-03	ci right 3.465893e-03	k: 1381	n:420000
Cons ci ratio: 1.032842e-02	ci left: 2.540603e-01	ci right 2.567003e-01	k: 107259	n:420000
KS ci ratio: 1.514350e-01	ci left: 1.472221e-03	ci right 1.715690e-03	k: 668	n:420000
FAM40B   420000 perm   136 sec   (3087 perm/sec)   p_kst 1.590476e-03   p_cons 2.553786e-01   p_joint 3.288095e-03

Joint ci ratio: 1.039274e-01	ci left: 3.126244e-03	ci right 3.471200e-03	k: 1417	n:430000
Cons ci ratio: 1.020680e-02	ci left: 2.541064e-01	ci right 2.567156e-01	k: 109826	n:430000
KS ci ratio: 1.488959e-01	ci left: 1.489463e-03	ci right 1.731286e-03	k: 691	n:430000
FAM40B   430000 perm   141 sec   (3054 perm/sec)   p_kst 1.606977e-03   p_cons 2.554093e-01   p_joint 3.295349e-03

Joint ci ratio: 1.028099e-01	ci left: 3.123826e-03	ci right 3.464585e-03	k: 1448	n:440000
Cons ci ratio: 1.008913e-02	ci left: 2.541596e-01	ci right 2.567391e-01	k: 112397	n:440000
KS ci ratio: 1.472039e-01	ci left: 1.490628e-03	ci right 1.729648e-03	k: 707	n:440000
FAM40B   440000 perm   146 sec   (3018 perm/sec)   p_kst 1.606818e-03   p_cons 2.554477e-01   p_joint 3.290909e-03

Joint ci ratio: 1.021790e-01	ci left: 3.093380e-03	ci right 3.428622e-03	k: 1466	n:450000
Cons ci ratio: 9.976308e-03	ci left: 2.541774e-01	ci right 2.567280e-01	k: 114953	n:450000
KS ci ratio: 1.454677e-01	ci left: 1.493898e-03	ci right 1.730371e-03	k: 724	n:450000
FAM40B   450000 perm   151 sec   (2984 perm/sec)   p_kst 1.608889e-03   p_cons 2.554511e-01   p_joint 3.257778e-03

Joint ci ratio: 1.023577e-01	ci left: 3.015535e-03	ci right 3.342947e-03	k: 1461	n:460000
Cons ci ratio: 9.869052e-03	ci left: 2.541229e-01	ci right 2.566454e-01	k: 117476	n:460000
KS ci ratio: 1.446729e-01	ci left: 1.478181e-03	ci right 1.710778e-03	k: 732	n:460000
FAM40B   460000 perm   156 sec   (2952 perm/sec)   p_kst 1.591304e-03   p_cons 2.553826e-01   p_joint 3.176087e-03

Joint ci ratio: 9.937152e-02	ci left: 3.135969e-03	ci right 3.465945e-03	k: 1550	n:470000
Cons ci ratio: 9.765511e-03	ci left: 2.540581e-01	ci right 2.565534e-01	k: 119993	n:470000
KS ci ratio: 1.423599e-01	ci left: 1.495962e-03	ci right 1.727273e-03	k: 756	n:470000
FAM40B   470000 perm   161 sec   (2922 perm/sec)   p_kst 1.608511e-03   p_cons 2.553043e-01   p_joint 3.297872e-03

Joint ci ratio: 9.829983e-02	ci left: 3.139719e-03	ci right 3.466321e-03	k: 1584	n:480000
Cons ci ratio: 9.660291e-03	ci left: 2.541876e-01	ci right 2.566571e-01	k: 122602	n:480000
KS ci ratio: 1.410618e-01	ci left: 1.492928e-03	ci right 1.721488e-03	k: 770	n:480000
FAM40B   480000 perm   166 sec   (2890 perm/sec)   p_kst 1.604167e-03   p_cons 2.554208e-01   p_joint 3.300000e-03

Joint ci ratio: 9.729223e-02	ci left: 3.141343e-03	ci right 3.464574e-03	k: 1617	n:490000
Cons ci ratio: 9.560348e-03	ci left: 2.542344e-01	ci right 2.566787e-01	k: 125173	n:490000
KS ci ratio: 1.391784e-01	ci left: 1.503816e-03	ci right 1.730714e-03	k: 791	n:490000
FAM40B   490000 perm   171 sec   (2859 perm/sec)   p_kst 1.614286e-03   p_cons 2.554551e-01   p_joint 3.300000e-03

Joint ci ratio: 9.726530e-02	ci left: 3.080463e-03	ci right 3.397336e-03	k: 1618	n:500000
Cons ci ratio: 9.463942e-03	ci left: 2.542596e-01	ci right 2.566793e-01	k: 127734	n:500000
KS ci ratio: 1.375380e-01	ci left: 1.510424e-03	ci right 1.735414e-03	k: 810	n:500000
FAM40B   500000 perm   177 sec   (2830 perm/sec)   p_kst 1.620000e-03   p_cons 2.554680e-01   p_joint 3.236000e-03

Joint ci ratio: 9.977232e-02	ci left: 2.867048e-03	ci right 3.170014e-03	k: 1538	n:510000
Cons ci ratio: 9.373100e-03	ci left: 2.541742e-01	ci right 2.565697e-01	k: 130239	n:510000
KS ci ratio: 1.354647e-01	ci left: 1.528155e-03	ci right 1.752077e-03	k: 835	n:510000
FAM40B   510000 perm   182 sec   (2803 perm/sec)   p_kst 1.637255e-03   p_cons 2.553706e-01   p_joint 3.015686e-03

Joint ci ratio: 9.906754e-02	ci left: 2.853167e-03	ci right 3.152413e-03	k: 1560	n:520000
Cons ci ratio: 9.282383e-03	ci left: 2.541921e-01	ci right 2.565645e-01	k: 132796	n:520000
KS ci ratio: 1.345829e-01	ci left: 1.519206e-03	ci right 1.740252e-03	k: 846	n:520000
FAM40B   520000 perm   187 sec   (2776 perm/sec)   p_kst 1.626923e-03   p_cons 2.553769e-01   p_joint 3.000000e-03

Joint ci ratio: 9.825304e-02	ci left: 2.847179e-03	ci right 3.143201e-03	k: 1586	n:530000
Cons ci ratio: 9.193383e-03	ci left: 2.542452e-01	ci right 2.565952e-01	k: 135372	n:530000
KS ci ratio: 1.335623e-01	ci left: 1.514247e-03	ci right 1.732768e-03	k: 859	n:530000
FAM40B   530000 perm   193 sec   (2750 perm/sec)   p_kst 1.620755e-03   p_cons 2.554189e-01   p_joint 2.992453e-03

Joint ci ratio: 9.709672e-02	ci left: 2.863106e-03	ci right 3.157081e-03	k: 1624	n:540000
Cons ci ratio: 9.105654e-03	ci left: 2.543482e-01	ci right 2.566766e-01	k: 137976	n:540000
KS ci ratio: 1.315868e-01	ci left: 1.532758e-03	ci right 1.750423e-03	k: 885	n:540000
FAM40B   540000 perm   198 sec   (2725 perm/sec)   p_kst 1.638889e-03   p_cons 2.555111e-01   p_joint 3.007407e-03

Joint ci ratio: 9.618353e-02	ci left: 2.866051e-03	ci right 3.157405e-03	k: 1655	n:550000
Cons ci ratio: 9.019915e-03	ci left: 2.544676e-01	ci right 2.567750e-01	k: 140591	n:550000
KS ci ratio: 1.300540e-01	ci left: 1.541822e-03	ci right 1.758027e-03	k: 906	n:550000
FAM40B   550000 perm   204 sec   (2698 perm/sec)   p_kst 1.647273e-03   p_cons 2.556200e-01   p_joint 3.009091e-03

Joint ci ratio: 9.540915e-02	ci left: 2.861931e-03	ci right 3.150392e-03	k: 1682	n:560000
Cons ci ratio: 8.937685e-03	ci left: 2.545346e-01	ci right 2.568215e-01	k: 143179	n:560000
KS ci ratio: 1.290620e-01	ci left: 1.538479e-03	ci right 1.752444e-03	k: 920	n:560000
FAM40B   560000 perm   210 sec   (2672 perm/sec)   p_kst 1.642857e-03   p_cons 2.556768e-01   p_joint 3.003571e-03

Joint ci ratio: 9.544012e-02	ci left: 2.810005e-03	ci right 3.093330e-03	k: 1681	n:570000
Cons ci ratio: 8.857703e-03	ci left: 2.545976e-01	ci right 2.568645e-01	k: 145766	n:570000
KS ci ratio: 1.273443e-01	ci left: 1.553942e-03	ci right 1.766964e-03	k: 945	n:570000
FAM40B   570000 perm   215 sec   (2646 perm/sec)   p_kst 1.657895e-03   p_cons 2.557298e-01   p_joint 2.949123e-03

Joint ci ratio: 9.454480e-02	ci left: 2.815419e-03	ci right 3.096479e-03	k: 1713	n:580000
Cons ci ratio: 8.779513e-03	ci left: 2.546723e-01	ci right 2.569198e-01	k: 148361	n:580000
KS ci ratio: 1.266772e-01	ci left: 1.543843e-03	ci right 1.754288e-03	k: 955	n:580000
FAM40B   580000 perm   221 sec   (2621 perm/sec)   p_kst 1.646552e-03   p_cons 2.557948e-01   p_joint 2.953448e-03

Joint ci ratio: 9.440917e-02	ci left: 2.775972e-03	ci right 3.052674e-03	k: 1718	n:590000
Cons ci ratio: 8.705450e-03	ci left: 2.546532e-01	ci right 2.568814e-01	k: 150902	n:590000
KS ci ratio: 1.258250e-01	ci left: 1.539014e-03	ci right 1.747284e-03	k: 968	n:590000
FAM40B   590000 perm   228 sec   (2593 perm/sec)   p_kst 1.640678e-03   p_cons 2.557661e-01   p_joint 2.911864e-03

Joint ci ratio: 9.678346e-02	ci left: 2.594667e-03	ci right 2.860170e-03	k: 1635	n:600000
Cons ci ratio: 8.634478e-03	ci left: 2.545799e-01	ci right 2.567892e-01	k: 153410	n:600000
KS ci ratio: 1.247989e-01	ci left: 1.539195e-03	ci right 1.745665e-03	k: 984	n:600000
FAM40B   600000 perm   234 sec   (2568 perm/sec)   p_kst 1.640000e-03   p_cons 2.556833e-01   p_joint 2.725000e-03

Joint ci ratio: 9.590789e-02	ci left: 2.600127e-03	ci right 2.863647e-03	k: 1665	n:610000
Cons ci ratio: 8.563369e-03	ci left: 2.545908e-01	ci right 2.567820e-01	k: 155968	n:610000
KS ci ratio: 1.236739e-01	ci left: 1.542553e-03	ci right 1.747472e-03	k: 1002	n:610000
FAM40B   610000 perm   240 sec   (2544 perm/sec)   p_kst 1.642623e-03   p_cons 2.556852e-01   p_joint 2.729508e-03

Joint ci ratio: 8.869921e-02	ci left: 3.000995e-03	ci right 3.281099e-03	k: 1946	n:620000
Cons ci ratio: 8.494636e-03	ci left: 2.545726e-01	ci right 2.567459e-01	k: 158508	n:620000
KS ci ratio: 1.226991e-01	ci left: 1.542685e-03	ci right 1.745889e-03	k: 1018	n:620000
FAM40B   620000 perm   246 sec   (2521 perm/sec)   p_kst 1.641935e-03   p_cons 2.556581e-01   p_joint 3.138710e-03

Joint ci ratio: 8.800143e-02	ci left: 3.001480e-03	ci right 3.279311e-03	k: 1977	n:630000
Cons ci ratio: 8.426337e-03	ci left: 2.546088e-01	ci right 2.567649e-01	k: 161082	n:630000
KS ci ratio: 1.219834e-01	ci left: 1.536662e-03	ci right 1.737807e-03	k: 1030	n:630000
FAM40B   630000 perm   252 sec   (2498 perm/sec)   p_kst 1.634921e-03   p_cons 2.556857e-01   p_joint 3.138095e-03

Joint ci ratio: 9.098160e-02	ci left: 2.760568e-03	ci right 3.025213e-03	k: 1850	n:640000
Cons ci ratio: 8.362337e-03	ci left: 2.545223e-01	ci right 2.566612e-01	k: 163578	n:640000
KS ci ratio: 1.214551e-01	ci left: 1.526285e-03	ci right 1.725144e-03	k: 1039	n:640000
FAM40B   640000 perm   259 sec   (2476 perm/sec)   p_kst 1.623438e-03   p_cons 2.555906e-01   p_joint 2.890625e-03

Joint ci ratio: 9.008513e-02	ci left: 2.773733e-03	ci right 3.036882e-03	k: 1887	n:650000
Cons ci ratio: 8.300377e-03	ci left: 2.544109e-01	ci right 2.565329e-01	k: 166056	n:650000
KS ci ratio: 1.203604e-01	ci left: 1.531151e-03	ci right 1.728718e-03	k: 1058	n:650000
FAM40B   650000 perm   265 sec   (2452 perm/sec)   p_kst 1.627692e-03   p_cons 2.554708e-01   p_joint 2.903077e-03

Joint ci ratio: 8.961236e-02	ci left: 2.761328e-03	ci right 3.021854e-03	k: 1907	n:660000
Cons ci ratio: 8.236590e-03	ci left: 2.544496e-01	ci right 2.565556e-01	k: 168631	n:660000
KS ci ratio: 1.195728e-01	ci left: 1.528527e-03	ci right 1.724374e-03	k: 1072	n:660000
FAM40B   660000 perm   271 sec   (2432 perm/sec)   p_kst 1.624242e-03   p_cons 2.555015e-01   p_joint 2.889394e-03

Joint ci ratio: 1.043956e-01	ci left: 1.990344e-03	ci right 2.211011e-03	k: 1406	n:670000
Cons ci ratio: 8.174828e-03	ci left: 2.544605e-01	ci right 2.565506e-01	k: 171188	n:670000
KS ci ratio: 1.185278e-01	ci left: 1.533227e-03	ci right 1.727839e-03	k: 1091	n:670000
FAM40B   670000 perm   278 sec   (2411 perm/sec)   p_kst 1.628358e-03   p_cons 2.555045e-01   p_joint 2.098507e-03

Joint ci ratio: 8.115785e-02	ci left: 3.280319e-03	ci right 3.559232e-03	k: 2324	n:680000
Cons ci ratio: 8.113182e-03	ci left: 2.545298e-01	ci right 2.566047e-01	k: 173785	n:680000
KS ci ratio: 1.176689e-01	ci left: 1.533514e-03	ci right 1.726654e-03	k: 1107	n:680000
FAM40B   680000 perm   284 sec   (2390 perm/sec)   p_kst 1.627941e-03   p_cons 2.555662e-01   p_joint 3.417647e-03

Joint ci ratio: 7.257659e-02	ci left: 4.057305e-03	ci right 4.364271e-03	k: 2904	n:690000
Cons ci ratio: 8.052111e-03	ci left: 2.546348e-01	ci right 2.566948e-01	k: 176408	n:690000
KS ci ratio: 1.167245e-01	ci left: 1.536612e-03	ci right 1.728481e-03	k: 1125	n:690000
FAM40B   690000 perm   291 sec   (2371 perm/sec)   p_kst 1.630435e-03   p_cons 2.556638e-01   p_joint 4.208696e-03

Joint ci ratio: 7.214366e-02	ci left: 4.048439e-03	ci right 4.352830e-03	k: 2939	n:700000
Cons ci ratio: 7.993119e-03	ci left: 2.547026e-01	ci right 2.567480e-01	k: 179007	n:700000
KS ci ratio: 1.156506e-01	ci left: 1.543789e-03	ci right 1.734659e-03	k: 1146	n:700000
FAM40B   700000 perm   298 sec   (2352 perm/sec)   p_kst 1.637143e-03   p_cons 2.557243e-01   p_joint 4.198571e-03

Joint ci ratio: 6.759769e-02	ci left: 4.554691e-03	ci right 4.874723e-03	k: 3346	n:710000
Cons ci ratio: 7.938194e-03	ci left: 2.546349e-01	ci right 2.566657e-01	k: 181511	n:710000
KS ci ratio: 1.147536e-01	ci left: 1.546667e-03	ci right 1.736310e-03	k: 1164	n:710000
FAM40B   710000 perm   304 sec   (2333 perm/sec)   p_kst 1.639437e-03   p_cons 2.556493e-01   p_joint 4.712676e-03

Joint ci ratio: 6.698934e-02	ci left: 4.574730e-03	ci right 4.893164e-03	k: 3407	n:720000
Cons ci ratio: 7.881336e-03	ci left: 2.547162e-01	ci right 2.567330e-01	k: 184121	n:720000
KS ci ratio: 1.139736e-01	ci left: 1.546772e-03	ci right 1.735052e-03	k: 1180	n:720000
FAM40B   720000 perm   311 sec   (2313 perm/sec)   p_kst 1.638889e-03   p_cons 2.557236e-01   p_joint 4.731944e-03

Joint ci ratio: 6.654183e-02	ci left: 4.574024e-03	ci right 4.890200e-03	k: 3453	n:730000
Cons ci ratio: 7.826387e-03	ci left: 2.547611e-01	ci right 2.567641e-01	k: 186706	n:730000
KS ci ratio: 1.130204e-01	ci left: 1.552203e-03	ci right 1.739459e-03	k: 1200	n:730000
FAM40B   730000 perm   318 sec   (2293 perm/sec)   p_kst 1.643836e-03   p_cons 2.557616e-01   p_joint 4.730137e-03

Joint ci ratio: 6.610317e-02	ci left: 4.573344e-03	ci right 4.887309e-03	k: 3499	n:740000
Cons ci ratio: 7.771909e-03	ci left: 2.548372e-01	ci right 2.568268e-01	k: 189315	n:740000
KS ci ratio: 1.122750e-01	ci left: 1.552240e-03	ci right 1.738183e-03	k: 1216	n:740000
FAM40B   740000 perm   326 sec   (2273 perm/sec)   p_kst 1.643243e-03   p_cons 2.558311e-01   p_joint 4.728378e-03

Joint ci ratio: 6.816076e-02	ci left: 4.240973e-03	ci right 4.541541e-03	k: 3292	n:750000
Cons ci ratio: 7.720147e-03	ci left: 2.548328e-01	ci right 2.568091e-01	k: 191865	n:750000
KS ci ratio: 1.114085e-01	ci left: 1.556168e-03	ci right 1.741049e-03	k: 1235	n:750000
FAM40B   750000 perm   333 sec   (2254 perm/sec)   p_kst 1.646667e-03   p_cons 2.558200e-01   p_joint 4.389333e-03

Joint ci ratio: 6.792490e-02	ci left: 4.214917e-03	ci right 4.512564e-03	k: 3315	n:760000
Cons ci ratio: 7.669883e-03	ci left: 2.548049e-01	ci right 2.567680e-01	k: 194397	n:760000
KS ci ratio: 1.106501e-01	ci left: 1.557439e-03	ci right 1.741130e-03	k: 1252	n:760000
FAM40B   760000 perm   340 sec   (2234 perm/sec)   p_kst 1.647368e-03   p_cons 2.557855e-01   p_joint 4.361842e-03

Joint ci ratio: 7.004816e-02	ci left: 3.908725e-03	ci right 4.193728e-03	k: 3118	n:770000
Cons ci ratio: 7.620069e-03	ci left: 2.548037e-01	ci right 2.567540e-01	k: 196949	n:770000
KS ci ratio: 1.098637e-01	ci left: 1.559945e-03	ci right 1.742538e-03	k: 1270	n:770000
FAM40B   770000 perm   347 sec   (2216 perm/sec)   p_kst 1.649351e-03   p_cons 2.557779e-01   p_joint 4.049351e-03

Joint ci ratio: 6.962542e-02	ci left: 3.906480e-03	ci right 4.189531e-03	k: 3156	n:780000
Cons ci ratio: 7.571187e-03	ci left: 2.548038e-01	ci right 2.567416e-01	k: 199502	n:780000
KS ci ratio: 1.092638e-01	ci left: 1.557402e-03	ci right 1.738639e-03	k: 1284	n:780000
FAM40B   780000 perm   355 sec   (2198 perm/sec)   p_kst 1.646154e-03   p_cons 2.557718e-01   p_joint 4.046154e-03

Joint ci ratio: 6.156874e-02	ci left: 4.947847e-03	ci right 5.263393e-03	k: 4032	n:790000
Cons ci ratio: 7.522783e-03	ci left: 2.548268e-01	ci right 2.567522e-01	k: 202073	n:790000
KS ci ratio: 1.081329e-01	ci left: 1.570937e-03	ci right 1.751736e-03	k: 1311	n:790000
FAM40B   790000 perm   362 sec   (2181 perm/sec)   p_kst 1.659494e-03   p_cons 2.557886e-01   p_joint 5.103797e-03

Joint ci ratio: 6.114550e-02	ci left: 4.954926e-03	ci right 5.268674e-03	k: 4088	n:800000
Cons ci ratio: 7.476941e-03	ci left: 2.547655e-01	ci right 2.566788e-01	k: 204577	n:800000
KS ci ratio: 1.075201e-01	ci left: 1.569545e-03	ci right 1.749095e-03	k: 1326	n:800000
FAM40B   800000 perm   370 sec   (2164 perm/sec)   p_kst 1.657500e-03   p_cons 2.557213e-01   p_joint 5.110000e-03

Joint ci ratio: 6.092322e-02	ci left: 4.930224e-03	ci right 5.241233e-03	k: 4118	n:810000
Cons ci ratio: 7.432240e-03	ci left: 2.546898e-01	ci right 2.565910e-01	k: 207068	n:810000
KS ci ratio: 1.070776e-01	ci left: 1.563383e-03	ci right 1.741446e-03	k: 1337	n:810000
FAM40B   810000 perm   377 sec   (2148 perm/sec)   p_kst 1.650617e-03   p_cons 2.556395e-01   p_joint 5.083951e-03

Joint ci ratio: 6.054222e-02	ci left: 4.932551e-03	ci right 5.241693e-03	k: 4170	n:820000
Cons ci ratio: 7.386035e-03	ci left: 2.547341e-01	ci right 2.566237e-01	k: 209656	n:820000
KS ci ratio: 1.064431e-01	ci left: 1.563309e-03	ci right 1.740242e-03	k: 1353	n:820000
FAM40B   820000 perm   385 sec   (2132 perm/sec)   p_kst 1.650000e-03   p_cons 2.556780e-01   p_joint 5.085366e-03

Joint ci ratio: 6.553054e-02	ci left: 4.152064e-03	ci right 4.434545e-03	k: 3562	n:830000
Cons ci ratio: 7.342331e-03	ci left: 2.546919e-01	ci right 2.565700e-01	k: 212173	n:830000
KS ci ratio: 1.056269e-01	ci left: 1.569104e-03	ci right 1.745247e-03	k: 1374	n:830000
FAM40B   830000 perm   392 sec   (2117 perm/sec)   p_kst 1.655422e-03   p_cons 2.556301e-01   p_joint 4.291566e-03

Joint ci ratio: 6.505717e-02	ci left: 4.163530e-03	ci right 4.444667e-03	k: 3614	n:840000
Cons ci ratio: 7.298480e-03	ci left: 2.546984e-01	ci right 2.565652e-01	k: 214730	n:840000
KS ci ratio: 1.046790e-01	ci left: 1.579404e-03	ci right 1.755014e-03	k: 1399	n:840000
FAM40B   840000 perm   400 sec   (2102 perm/sec)   p_kst 1.665476e-03   p_cons 2.556310e-01   p_joint 4.302381e-03

Joint ci ratio: 6.470031e-02	ci left: 4.160842e-03	ci right 4.440199e-03	k: 3654	n:850000
Cons ci ratio: 7.253544e-03	ci left: 2.548022e-01	ci right 2.566583e-01	k: 217370	n:850000
KS ci ratio: 1.040492e-01	ci left: 1.580301e-03	ci right 1.754888e-03	k: 1416	n:850000
FAM40B   850000 perm   407 sec   (2086 perm/sec)   p_kst 1.665882e-03   p_cons 2.557294e-01   p_joint 4.298824e-03

Joint ci ratio: 6.429686e-02	ci left: 4.165087e-03	ci right 4.442920e-03	k: 3700	n:860000
Cons ci ratio: 7.212049e-03	ci left: 2.547655e-01	ci right 2.566106e-01	k: 219891	n:860000
KS ci ratio: 1.032864e-01	ci left: 1.585711e-03	ci right 1.759534e-03	k: 1437	n:860000
FAM40B   860000 perm   415 sec   (2071 perm/sec)   p_kst 1.670930e-03   p_cons 2.556872e-01   p_joint 4.302326e-03

Joint ci ratio: 6.405557e-02	ci left: 4.148878e-03	ci right 4.424553e-03	k: 3728	n:870000
Cons ci ratio: 7.171583e-03	ci left: 2.547124e-01	ci right 2.565467e-01	k: 222397	n:870000
KS ci ratio: 1.026459e-01	ci left: 1.587641e-03	ci right 1.760532e-03	k: 1455	n:870000
FAM40B   870000 perm   423 sec   (2055 perm/sec)   p_kst 1.672414e-03   p_cons 2.556287e-01   p_joint 4.285057e-03

Joint ci ratio: 6.366399e-02	ci left: 4.153170e-03	ci right 4.427381e-03	k: 3774	n:880000
Cons ci ratio: 7.129682e-03	ci left: 2.547729e-01	ci right 2.565969e-01	k: 225002	n:880000
KS ci ratio: 1.019825e-01	ci left: 1.590638e-03	ci right 1.762669e-03	k: 1474	n:880000
FAM40B   880000 perm   431 sec   (2040 perm/sec)   p_kst 1.675000e-03   p_cons 2.556841e-01   p_joint 4.288636e-03

Joint ci ratio: 1.415743e-01	ci left: 7.997351e-04	ci right 9.226520e-04	k: 765	n:890000
Cons ci ratio: 7.088737e-03	ci left: 2.548197e-01	ci right 2.566336e-01	k: 227596	n:890000
KS ci ratio: 1.046465e-01	ci left: 1.491764e-03	ci right 1.657575e-03	k: 1400	n:890000
FAM40B   890000 perm   440 sec   (2025 perm/sec)   p_kst 1.573034e-03   p_cons 2.557258e-01   p_joint 8.595506e-04

Joint ci ratio: 1.406590e-01	ci left: 8.015680e-04	ci right 9.239034e-04	k: 775	n:900000
Cons ci ratio: 7.049868e-03	ci left: 2.547912e-01	ci right 2.565948e-01	k: 230123	n:900000
KS ci ratio: 1.039805e-01	ci left: 1.494667e-03	ci right 1.659679e-03	k: 1418	n:900000
FAM40B   900000 perm   448 sec   (2009 perm/sec)   p_kst 1.575556e-03   p_cons 2.556922e-01   p_joint 8.611111e-04

Joint ci ratio: 1.361674e-01	ci left: 8.479255e-04	ci right 9.728689e-04	k: 827	n:910000
Cons ci ratio: 7.011247e-03	ci left: 2.547841e-01	ci right 2.565779e-01	k: 232669	n:910000
KS ci ratio: 1.033992e-01	ci left: 1.495369e-03	ci right 1.659479e-03	k: 1434	n:910000
FAM40B   910000 perm   456 sec   (1994 perm/sec)   p_kst 1.575824e-03   p_cons 2.556802e-01   p_joint 9.087912e-04

Joint ci ratio: 1.354333e-01	ci left: 8.481592e-04	ci right 9.724089e-04	k: 836	n:920000
Cons ci ratio: 6.972736e-03	ci left: 2.548055e-01	ci right 2.565895e-01	k: 235241	n:920000
KS ci ratio: 1.026152e-01	ci left: 1.502412e-03	ci right 1.665969e-03	k: 1456	n:920000
FAM40B   920000 perm   465 sec   (1981 perm/sec)   p_kst 1.582609e-03   p_cons 2.556967e-01   p_joint 9.086957e-04

Joint ci ratio: 1.351917e-01	ci left: 8.421557e-04	ci right 9.652881e-04	k: 839	n:930000
Cons ci ratio: 6.936106e-03	ci left: 2.547577e-01	ci right 2.565320e-01	k: 237749	n:930000
KS ci ratio: 1.020911e-01	ci left: 1.501973e-03	ci right 1.664597e-03	k: 1471	n:930000
FAM40B   930000 perm   473 sec   (1967 perm/sec)   p_kst 1.581720e-03   p_cons 2.556441e-01   p_joint 9.021505e-04

Joint ci ratio: 1.342360e-01	ci left: 8.455324e-04	ci right 9.682149e-04	k: 851	n:940000
Cons ci ratio: 6.899006e-03	ci left: 2.547684e-01	ci right 2.565331e-01	k: 240311	n:940000
KS ci ratio: 1.014043e-01	ci left: 1.506730e-03	ci right 1.668707e-03	k: 1491	n:940000
FAM40B   940000 perm   481 sec   (1953 perm/sec)   p_kst 1.586170e-03   p_cons 2.556500e-01   p_joint 9.053191e-04

Joint ci ratio: 1.336103e-01	ci left: 8.447709e-04	ci right 9.667262e-04	k: 859	n:950000
Cons ci ratio: 6.864318e-03	ci left: 2.546779e-01	ci right 2.564331e-01	k: 242777	n:950000
KS ci ratio: 1.007312e-01	ci left: 1.511390e-03	ci right 1.672726e-03	k: 1511	n:950000
FAM40B   950000 perm   490 sec   (1940 perm/sec)   p_kst 1.590526e-03   p_cons 2.555547e-01   p_joint 9.042105e-04

Joint ci ratio: 1.325355e-01	ci left: 8.500692e-04	ci right 9.717245e-04	k: 873	n:960000
Cons ci ratio: 6.828147e-03	ci left: 2.547006e-01	ci right 2.564467e-01	k: 245350	n:960000
KS ci ratio: 1.001696e-01	ci left: 1.512910e-03	ci right 1.673454e-03	k: 1528	n:960000
FAM40B   960000 perm   498 sec   (1927 perm/sec)   p_kst 1.591667e-03   p_cons 2.555729e-01   p_joint 9.093750e-04

Joint ci ratio: 1.316347e-01	ci left: 8.532681e-04	ci right 9.744863e-04	k: 885	n:970000
Cons ci ratio: 6.792652e-03	ci left: 2.547167e-01	ci right 2.564538e-01	k: 247917	n:970000
KS ci ratio: 9.971424e-02	ci left: 1.511385e-03	ci right 1.670996e-03	k: 1542	n:970000
FAM40B   970000 perm   507 sec   (1915 perm/sec)   p_kst 1.589691e-03   p_cons 2.555845e-01   p_joint 9.123711e-04

Joint ci ratio: 1.309712e-01	ci left: 8.534433e-04	ci right 9.740277e-04	k: 894	n:980000
Cons ci ratio: 6.756835e-03	ci left: 2.547814e-01	ci right 2.565098e-01	k: 250532	n:980000
KS ci ratio: 9.916938e-02	ci left: 1.512879e-03	ci right 1.671723e-03	k: 1559	n:980000
FAM40B   980000 perm   515 sec   (1902 perm/sec)   p_kst 1.590816e-03   p_cons 2.556449e-01   p_joint 9.122449e-04

Joint ci ratio: 1.301736e-01	ci left: 8.555709e-04	ci right 9.756629e-04	k: 905	n:990000
Cons ci ratio: 6.722114e-03	ci left: 2.548146e-01	ci right 2.565343e-01	k: 253117	n:990000
KS ci ratio: 9.860205e-02	ci left: 1.515329e-03	ci right 1.673468e-03	k: 1577	n:990000
FAM40B   990000 perm   524 sec   (1889 perm/sec)   p_kst 1.592929e-03   p_cons 2.556737e-01   p_joint 9.141414e-04

Joint ci ratio: 1.296738e-01	ci left: 8.537876e-04	ci right 9.731337e-04	k: 912	n:1000000
Cons ci ratio: 6.688414e-03	ci left: 2.548192e-01	ci right 2.565302e-01	k: 255674	n:1000000
KS ci ratio: 9.807513e-02	ci left: 1.516758e-03	ci right 1.674152e-03	k: 1594	n:1000000
FAM40B   1000000 perm   533 sec   (1875 perm/sec)   p_kst 1.594000e-03   p_cons 2.556740e-01   p_joint 9.120000e-04

Joint ci ratio: 1.288995e-01	ci left: 8.558732e-04	ci right 9.747418e-04	k: 923	n:1010000
Cons ci ratio: 6.655061e-03	ci left: 2.548326e-01	ci right 2.565351e-01	k: 258240	n:1010000
KS ci ratio: 9.761723e-02	ci left: 1.516229e-03	ci right 1.672791e-03	k: 1609	n:1010000
FAM40B   1010000 perm   542 sec   (1863 perm/sec)   p_kst 1.593069e-03   p_cons 2.556832e-01   p_joint 9.138614e-04

Joint ci ratio: 1.281389e-01	ci left: 8.579199e-04	ci right 9.763162e-04	k: 934	n:1020000
Cons ci ratio: 6.622014e-03	ci left: 2.548565e-01	ci right 2.565507e-01	k: 260817	n:1020000
KS ci ratio: 9.707598e-02	ci left: 1.518581e-03	ci right 1.674467e-03	k: 1627	n:1020000
FAM40B   1020000 perm   551 sec   (1850 perm/sec)   p_kst 1.595098e-03   p_cons 2.557029e-01   p_joint 9.156863e-04

Joint ci ratio: 1.275266e-01	ci left: 8.580490e-04	ci right 9.758546e-04	k: 943	n:1030000
Cons ci ratio: 6.588967e-03	ci left: 2.549081e-01	ci right 2.565942e-01	k: 263423	n:1030000
KS ci ratio: 9.657302e-02	ci left: 1.519943e-03	ci right 1.675115e-03	k: 1644	n:1030000
FAM40B   1030000 perm   560 sec   (1838 perm/sec)   p_kst 1.596117e-03   p_cons 2.557505e-01   p_joint 9.155340e-04

Joint ci ratio: 1.268564e-01	ci left: 8.591080e-04	ci right 9.763925e-04	k: 953	n:1040000
Cons ci ratio: 6.557552e-03	ci left: 2.548925e-01	ci right 2.565704e-01	k: 265960	n:1040000
KS ci ratio: 9.613575e-02	ci left: 1.519403e-03	ci right 1.673778e-03	k: 1659	n:1040000
FAM40B   1040000 perm   569 sec   (1827 perm/sec)   p_kst 1.595192e-03   p_cons 2.557308e-01   p_joint 9.163462e-04

Joint ci ratio: 1.263279e-01	ci left: 8.583038e-04	ci right 9.749538e-04	k: 961	n:1050000
Cons ci ratio: 6.525816e-03	ci left: 2.549219e-01	ci right 2.565918e-01	k: 268544	n:1050000
KS ci ratio: 9.564719e-02	ci left: 1.520735e-03	ci right 1.674416e-03	k: 1676	n:1050000
FAM40B   1050000 perm   579 sec   (1815 perm/sec)   p_kst 1.596190e-03   p_cons 2.557562e-01   p_joint 9.152381e-04

Joint ci ratio: 1.170705e-01	ci left: 9.947361e-04	ci right 1.119337e-03	k: 1119	n:1060000
Cons ci ratio: 6.494600e-03	ci left: 2.549470e-01	ci right 2.566091e-01	k: 271124	n:1060000
KS ci ratio: 9.522233e-02	ci left: 1.520202e-03	ci right 1.673108e-03	k: 1691	n:1060000
FAM40B   1060000 perm   588 sec   (1803 perm/sec)   p_kst 1.595283e-03   p_cons 2.557774e-01   p_joint 1.055660e-03

Joint ci ratio: 5.889398e-02	ci left: 4.001902e-03	ci right 4.245654e-03	k: 4411	n:1070000
Cons ci ratio: 6.465605e-03	ci left: 2.548671e-01	ci right 2.565212e-01	k: 273592	n:1070000
KS ci ratio: 9.158145e-02	ci left: 1.631046e-03	ci right 1.788493e-03	k: 1828	n:1070000
FAM40B   1070000 perm   598 sec   (1791 perm/sec)   p_kst 1.708411e-03   p_cons 2.556935e-01   p_joint 4.122430e-03

Outputting figure to mutsig2_images.part000000000061/FAM40B.5_2612_1070000_0.0017084_0.25569_0.0041224.png
                gene_name: FAM40B
               theta_stop: 0.092 
                    nperm: 1070000 
                     p_ks: 0.0017 
        ci_ks_bounds_left: 0.0016 
       ci_ks_bounds_right: 0.0018 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.0041 
     ci_joint_bounds_left: 0.0040 
    ci_joint_bounds_right: 0.0042 

Current progress: 35 percent done.
FAM164C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.738372e-02	ci left: 1.962376e-01	ci right 2.121351e-01	k: 2041	n:10000
Cons ci ratio: 1.779247e-02	ci left: 8.216784e-01	ci right 8.365294e-01	k: 8292	n:10000
KS ci ratio: 1.148705e-01	ci left: 9.827781e-02	ci right 1.103538e-01	k: 1042	n:10000
FAM164C   10000 perm   2 sec   (6664 perm/sec)   p_kst 1.042000e-01   p_cons 8.292000e-01   p_joint 2.041000e-01

Joint ci ratio: 4.819595e-02	ci left: 2.425228e-01	ci right 2.545504e-01	k: 4970	n:20000
Cons ci ratio: 1.265829e-02	ci left: 8.221408e-01	ci right 8.326639e-01	k: 16549	n:20000
KS ci ratio: 8.131434e-02	ci left: 9.985126e-02	ci right 1.083642e-01	k: 2081	n:20000
FAM164C   20000 perm   3 sec   (5982 perm/sec)   p_kst 1.040500e-01   p_cons 8.274500e-01   p_joint 2.485000e-01

Outputting figure to mutsig2_images.part000000000061/FAM164C.4_1379_20000_0.10405_0.82745_0.2485.png
                gene_name: FAM164C
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 37 percent done.
FAM169A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.278265e-02	ci left: 4.465016e-01	ci right 4.661239e-01	k: 4563	n:10000
Cons ci ratio: 6.264161e-02	ci left: 2.725021e-01	ci right 2.902255e-01	k: 2813	n:10000
KS ci ratio: 4.630365e-02	ci left: 4.077101e-01	ci right 4.271381e-01	k: 4174	n:10000
FAM169A   10000 perm   2 sec   (6172 perm/sec)   p_kst 4.174000e-01   p_cons 2.813000e-01   p_joint 4.563000e-01

Outputting figure to mutsig2_images.part000000000061/FAM169A.4_2061_10000_0.4174_0.2813_0.4563.png
                gene_name: FAM169A
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 39 percent done.
FAM173B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.627337e-02	ci left: 6.808309e-01	ci right 6.990583e-01	k: 6900	n:10000
Cons ci ratio: 4.845369e-02	ci left: 3.858982e-01	ci right 4.051627e-01	k: 3955	n:10000
KS ci ratio: 2.070962e-02	ci left: 7.735734e-01	ci right 7.898622e-01	k: 7818	n:10000
FAM173B   10000 perm   1 sec   (6878 perm/sec)   p_kst 7.818000e-01   p_cons 3.955000e-01   p_joint 6.900000e-01

Outputting figure to mutsig2_images.part000000000061/FAM173B.4_722_10000_0.7818_0.3955_0.69.png
                gene_name: FAM173B
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 41 percent done.
FAM179A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.042832e-02	ci left: 4.746606e-01	ci right 4.943484e-01	k: 4845	n:10000
Cons ci ratio: 4.593439e-02	ci left: 4.115964e-01	ci right 4.310494e-01	k: 4213	n:10000
KS ci ratio: 6.138026e-02	ci left: 2.807224e-01	ci right 2.986003e-01	k: 2896	n:10000
FAM179A   10000 perm   2 sec   (6117 perm/sec)   p_kst 2.896000e-01   p_cons 4.213000e-01   p_joint 4.845000e-01

Outputting figure to mutsig2_images.part000000000061/FAM179A.4_3136_10000_0.2896_0.4213_0.4845.png
                gene_name: FAM179A
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 43 percent done.
FAM181A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.264263e-01	ci left: 8.212963e-02	ci right 9.331191e-02	k: 876	n:10000
Cons ci ratio: 1.133596e-01	ci left: 1.007141e-01	ci right 1.129160e-01	k: 1067	n:10000
KS ci ratio: 1.156770e-01	ci left: 9.701134e-02	ci right 1.090210e-01	k: 1029	n:10000
FAM181A   10000 perm   1 sec   (7168 perm/sec)   p_kst 1.029000e-01   p_cons 1.067000e-01   p_joint 8.760000e-02

Joint ci ratio: 8.617888e-02	ci left: 8.969559e-02	ci right 9.782296e-02	k: 1874	n:20000
Cons ci ratio: 7.810667e-02	ci left: 1.074644e-01	ci right 1.162488e-01	k: 2236	n:20000
KS ci ratio: 8.213131e-02	ci left: 9.803498e-02	ci right 1.064811e-01	k: 2044	n:20000
FAM181A   20000 perm   3 sec   (6371 perm/sec)   p_kst 1.022000e-01   p_cons 1.118000e-01   p_joint 9.370000e-02

Outputting figure to mutsig2_images.part000000000061/FAM181A.4_1073_20000_0.1022_0.1118_0.0937.png
                gene_name: FAM181A
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.098 

Current progress: 45 percent done.
FAM188B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.803081e-02	ci left: 3.900798e-01	ci right 4.093787e-01	k: 3997	n:10000
Cons ci ratio: 3.610238e-02	ci left: 5.311724e-01	ci right 5.508037e-01	k: 5410	n:10000
KS ci ratio: 5.888151e-02	ci left: 2.979669e-01	ci right 3.161456e-01	k: 3070	n:10000
FAM188B   10000 perm   2 sec   (6216 perm/sec)   p_kst 3.070000e-01   p_cons 5.410000e-01   p_joint 3.997000e-01

Outputting figure to mutsig2_images.part000000000061/FAM188B.4_2346_10000_0.307_0.541_0.3997.png
                gene_name: FAM188B
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 47 percent done.
FAM35A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.446075e-02	ci left: 2.088557e-01	ci right 2.251095e-01	k: 2169	n:10000
Cons ci ratio: 5.642880e-02	ci left: 3.162190e-01	ci right 3.346828e-01	k: 3254	n:10000
KS ci ratio: 9.028637e-02	ci left: 1.513922e-01	ci right 1.658072e-01	k: 1585	n:10000
FAM35A   10000 perm   2 sec   (6018 perm/sec)   p_kst 1.585000e-01   p_cons 3.254000e-01   p_joint 2.169000e-01

Outputting figure to mutsig2_images.part000000000061/FAM35A.4_2536_10000_0.1585_0.3254_0.2169.png
                gene_name: FAM35A
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 49 percent done.
FAM46D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.308208e-02	ci left: 3.434285e-01	ci right 3.622573e-01	k: 3528	n:10000
Cons ci ratio: 2.311446e-02	ci left: 7.333048e-01	ci right 7.505541e-01	k: 7420	n:10000
KS ci ratio: 7.632823e-02	ci left: 2.006723e-01	ci right 2.166978e-01	k: 2086	n:10000
FAM46D   10000 perm   1 sec   (6692 perm/sec)   p_kst 2.086000e-01   p_cons 7.420000e-01   p_joint 3.528000e-01

Outputting figure to mutsig2_images.part000000000061/FAM46D.4_1174_10000_0.2086_0.742_0.3528.png
                gene_name: FAM46D
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 51 percent done.
FAM167A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.017888e-02	ci left: 2.293843e-01	ci right 2.461688e-01	k: 2377	n:10000
Cons ci ratio: 2.272211e-01	ci left: 2.560990e-02	ci right 3.226830e-02	k: 288	n:10000
KS ci ratio: 8.432283e-02	ci left: 1.701542e-01	ci right 1.852341e-01	k: 1776	n:10000
FAM167A   10000 perm   1 sec   (6908 perm/sec)   p_kst 1.776000e-01   p_cons 2.880000e-02   p_joint 2.377000e-01

Joint ci ratio: 1.196283e-01	ci left: 4.789434e-02	ci right 5.403704e-02	k: 1018	n:20000
Cons ci ratio: 1.544545e-01	ci left: 2.878572e-02	ci right 3.365183e-02	k: 623	n:20000
KS ci ratio: 5.897133e-02	ci left: 1.755868e-01	ci right 1.863061e-01	k: 3618	n:20000
FAM167A   20000 perm   3 sec   (6242 perm/sec)   p_kst 1.809000e-01   p_cons 3.115000e-02   p_joint 5.090000e-02

Joint ci ratio: 9.222460e-02	ci left: 5.417457e-02	ci right 5.944500e-02	k: 1703	n:30000
Cons ci ratio: 1.279587e-01	ci left: 2.838926e-02	ci right 3.230240e-02	k: 909	n:30000
KS ci ratio: 4.850227e-02	ci left: 1.744455e-01	ci right 1.831501e-01	k: 5363	n:30000
FAM167A   30000 perm   5 sec   (5844 perm/sec)   p_kst 1.787667e-01   p_cons 3.030000e-02   p_joint 5.676667e-02

Joint ci ratio: 7.497042e-02	ci left: 6.157156e-02	ci right 6.639198e-02	k: 2558	n:40000
Cons ci ratio: 1.201400e-01	ci left: 2.436542e-02	ci right 2.750392e-02	k: 1036	n:40000
KS ci ratio: 4.182637e-02	ci left: 1.762707e-01	ci right 1.838259e-01	k: 7201	n:40000
FAM167A   40000 perm   7 sec   (5682 perm/sec)   p_kst 1.800250e-01   p_cons 2.590000e-02   p_joint 6.395000e-02

Joint ci ratio: 6.578763e-02	ci left: 6.411469e-02	ci right 6.849582e-02	k: 3314	n:50000
Cons ci ratio: 9.947834e-02	ci left: 2.861968e-02	ci right 3.163520e-02	k: 1505	n:50000
KS ci ratio: 3.766993e-02	ci left: 1.746560e-01	ci right 1.813815e-01	k: 8900	n:50000
FAM167A   50000 perm   9 sec   (5539 perm/sec)   p_kst 1.780000e-01   p_cons 3.010000e-02   p_joint 6.628000e-02

Outputting figure to mutsig2_images.part000000000061/FAM167A.3_653_50000_0.178_0.0301_0.06628.png
                gene_name: FAM167A
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.068 

Current progress: 53 percent done.
FAM169B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.807086e-02	ci left: 3.896815e-01	ci right 4.089772e-01	k: 3993	n:10000
Cons ci ratio: 6.582365e-02	ci left: 2.531052e-01	ci right 2.704338e-01	k: 2617	n:10000
KS ci ratio: 4.565297e-02	ci left: 4.145864e-01	ci right 4.340577e-01	k: 4243	n:10000
FAM169B   10000 perm   1 sec   (8021 perm/sec)   p_kst 4.243000e-01   p_cons 2.617000e-01   p_joint 3.993000e-01

Outputting figure to mutsig2_images.part000000000061/FAM169B.3_599_10000_0.4243_0.2617_0.3993.png
                gene_name: FAM169B
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 55 percent done.
FAM175A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.722967e-02	ci left: 3.981463e-01	ci right 4.175075e-01	k: 4078	n:10000
Cons ci ratio: 2.058215e-02	ci left: 7.757010e-01	ci right 7.919333e-01	k: 7839	n:10000
KS ci ratio: 7.740754e-02	ci left: 1.961390e-01	ci right 2.120337e-01	k: 2040	n:10000
FAM175A   10000 perm   1 sec   (6927 perm/sec)   p_kst 2.040000e-01   p_cons 7.839000e-01   p_joint 4.078000e-01

Outputting figure to mutsig2_images.part000000000061/FAM175A.3_1266_10000_0.204_0.7839_0.4078.png
                gene_name: FAM175A
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 57 percent done.
FAM176A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.626932e-02	ci left: 2.505337e-01	ci right 2.678068e-01	k: 2591	n:10000
Cons ci ratio: 7.849617e-02	ci left: 1.917059e-01	ci right 2.074695e-01	k: 1995	n:10000
KS ci ratio: 5.755268e-02	ci left: 3.076861e-01	ci right 3.260207e-01	k: 3168	n:10000
FAM176A   10000 perm   1 sec   (8046 perm/sec)   p_kst 3.168000e-01   p_cons 1.995000e-01   p_joint 2.591000e-01

Outputting figure to mutsig2_images.part000000000061/FAM176A.3_467_10000_0.3168_0.1995_0.2591.png
                gene_name: FAM176A
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 59 percent done.
FAM188A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.859073e-02	ci left: 1.297297e-01	ci right 1.432828e-01	k: 1364	n:10000
Cons ci ratio: 1.655280e-01	ci left: 4.868974e-02	ci right 5.757286e-02	k: 530	n:10000
KS ci ratio: 8.386407e-02	ci left: 1.717274e-01	ci right 1.868599e-01	k: 1792	n:10000
FAM188A   10000 perm   1 sec   (7228 perm/sec)   p_kst 1.792000e-01   p_cons 5.300000e-02   p_joint 1.364000e-01

Joint ci ratio: 8.047557e-02	ci left: 1.017662e-01	ci right 1.103488e-01	k: 2120	n:20000
Cons ci ratio: 1.167009e-01	ci left: 5.027556e-02	ci right 5.655507e-02	k: 1067	n:20000
KS ci ratio: 5.941274e-02	ci left: 1.734126e-01	ci right 1.840810e-01	k: 3574	n:20000
FAM188A   20000 perm   3 sec   (6343 perm/sec)   p_kst 1.787000e-01   p_cons 5.335000e-02   p_joint 1.060000e-01

Joint ci ratio: 5.836701e-02	ci left: 1.268720e-01	ci right 1.345330e-01	k: 3920	n:30000
Cons ci ratio: 9.627460e-02	ci left: 4.984009e-02	ci right 5.491370e-02	k: 1570	n:30000
KS ci ratio: 4.809874e-02	ci left: 1.768887e-01	ci right 1.856398e-01	k: 5437	n:30000
FAM188A   30000 perm   5 sec   (6061 perm/sec)   p_kst 1.812333e-01   p_cons 5.233333e-02   p_joint 1.306667e-01

Outputting figure to mutsig2_images.part000000000061/FAM188A.3_1398_30000_0.18123_0.052333_0.13067.png
                gene_name: FAM188A
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 61 percent done.
FAM189A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.938045e-01	ci left: 3.548103e-02	ci right 4.319029e-02	k: 392	n:10000
Cons ci ratio: 7.268333e-01	ci left: 1.861361e-03	ci right 4.044256e-03	k: 28	n:10000
KS ci ratio: 3.209660e-02	ci left: 5.889150e-01	ci right 6.082275e-01	k: 5986	n:10000
FAM189A2   10000 perm   1 sec   (7031 perm/sec)   p_kst 5.986000e-01   p_cons 2.800000e-03   p_joint 3.920000e-02

Joint ci ratio: 1.588432e-01	ci left: 2.719860e-02	ci right 3.193948e-02	k: 590	n:20000
Cons ci ratio: 5.139616e-01	ci left: 2.159255e-03	ci right 3.690949e-03	k: 57	n:20000
KS ci ratio: 2.274895e-02	ci left: 5.906647e-01	ci right 6.043069e-01	k: 11950	n:20000
FAM189A2   20000 perm   3 sec   (6245 perm/sec)   p_kst 5.975000e-01   p_cons 2.850000e-03   p_joint 2.950000e-02

Joint ci ratio: 1.917907e-01	ci left: 1.241520e-02	ci right 1.508019e-02	k: 411	n:30000
Cons ci ratio: 4.322924e-01	ci left: 2.144750e-03	ci right 3.354753e-03	k: 81	n:30000
KS ci ratio: 1.869601e-02	ci left: 5.887848e-01	ci right 5.999302e-01	k: 17831	n:30000
FAM189A2   30000 perm   5 sec   (5945 perm/sec)   p_kst 5.943667e-01   p_cons 2.700000e-03   p_joint 1.370000e-02

Joint ci ratio: 1.249885e-01	ci left: 2.249804e-02	ci right 2.552160e-02	k: 959	n:40000
Cons ci ratio: 3.915048e-01	ci left: 2.011999e-03	ci right 3.012412e-03	k: 99	n:40000
KS ci ratio: 1.622553e-02	ci left: 5.885171e-01	ci right 5.981693e-01	k: 23734	n:40000
FAM189A2   40000 perm   7 sec   (5749 perm/sec)   p_kst 5.933500e-01   p_cons 2.475000e-03   p_joint 2.397500e-02

Joint ci ratio: 1.057623e-01	ci left: 2.532401e-02	ci right 2.817129e-02	k: 1336	n:50000
Cons ci ratio: 3.530160e-01	ci left: 2.026672e-03	ci right 2.912674e-03	k: 122	n:50000
KS ci ratio: 1.454845e-02	ci left: 5.878372e-01	ci right 5.964721e-01	k: 29608	n:50000
FAM189A2   50000 perm   9 sec   (5590 perm/sec)   p_kst 5.921600e-01   p_cons 2.440000e-03   p_joint 2.672000e-02

Joint ci ratio: 1.162979e-01	ci left: 1.750155e-02	ci right 1.967870e-02	k: 1114	n:60000
Cons ci ratio: 3.321019e-01	ci left: 1.932621e-03	ci right 2.716762e-03	k: 138	n:60000
KS ci ratio: 1.327293e-02	ci left: 5.885055e-01	ci right 5.963856e-01	k: 35547	n:60000
FAM189A2   60000 perm   11 sec   (5449 perm/sec)   p_kst 5.924500e-01   p_cons 2.300000e-03   p_joint 1.856667e-02

Joint ci ratio: 1.212997e-01	ci left: 1.380762e-02	ci right 1.560437e-02	k: 1028	n:70000
Cons ci ratio: 3.057396e-01	ci left: 1.985142e-03	ci right 2.714234e-03	k: 163	n:70000
KS ci ratio: 1.229620e-02	ci left: 5.884914e-01	ci right 5.957867e-01	k: 41450	n:70000
FAM189A2   70000 perm   13 sec   (5324 perm/sec)   p_kst 5.921429e-01   p_cons 2.328571e-03   p_joint 1.468571e-02

Joint ci ratio: 9.925321e-02	ci left: 1.817493e-02	ci right 2.008517e-02	k: 1529	n:80000
Cons ci ratio: 2.902372e-01	ci left: 1.945183e-03	ci right 2.616728e-03	k: 181	n:80000
KS ci ratio: 1.153079e-02	ci left: 5.875210e-01	ci right 5.943474e-01	k: 47275	n:80000
FAM189A2   80000 perm   15 sec   (5216 perm/sec)   p_kst 5.909375e-01   p_cons 2.262500e-03   p_joint 1.911250e-02

Joint ci ratio: 1.041748e-01	ci left: 1.468139e-02	ci right 1.630562e-02	k: 1393	n:90000
Cons ci ratio: 2.714873e-01	ci left: 1.997622e-03	ci right 2.635134e-03	k: 207	n:90000
KS ci ratio: 1.087194e-02	ci left: 5.876905e-01	ci right 5.941259e-01	k: 53182	n:90000
FAM189A2   90000 perm   18 sec   (5111 perm/sec)   p_kst 5.909111e-01   p_cons 2.300000e-03   p_joint 1.547778e-02

Joint ci ratio: 9.543948e-02	ci left: 1.579762e-02	ci right 1.739060e-02	k: 1658	n:100000
Cons ci ratio: 2.548677e-01	ci left: 2.059413e-03	ci right 2.670024e-03	k: 235	n:100000
KS ci ratio: 1.031961e-02	ci left: 5.875948e-01	ci right 5.937000e-01	k: 59065	n:100000
FAM189A2   100000 perm   20 sec   (5018 perm/sec)   p_kst 5.906500e-01   p_cons 2.350000e-03   p_joint 1.658000e-02

Joint ci ratio: 9.369432e-02	ci left: 1.492921e-02	ci right 1.640557e-02	k: 1722	n:110000
Cons ci ratio: 2.414273e-01	ci left: 2.102400e-03	ci right 2.687966e-03	k: 262	n:110000
KS ci ratio: 9.828929e-03	ci left: 5.882515e-01	ci right 5.940710e-01	k: 65028	n:110000
FAM189A2   110000 perm   22 sec   (4921 perm/sec)   p_kst 5.911636e-01   p_cons 2.381818e-03   p_joint 1.565455e-02

Joint ci ratio: 8.698637e-02	ci left: 1.591725e-02	ci right 1.737291e-02	k: 1996	n:120000
Cons ci ratio: 2.315171e-01	ci left: 2.107516e-03	ci right 2.666966e-03	k: 285	n:120000
KS ci ratio: 9.410919e-03	ci left: 5.883538e-01	ci right 5.939252e-01	k: 70937	n:120000
FAM189A2   120000 perm   25 sec   (4833 perm/sec)   p_kst 5.911417e-01   p_cons 2.375000e-03   p_joint 1.663333e-02

Joint ci ratio: 8.313366e-02	ci left: 1.611584e-02	ci right 1.752121e-02	k: 2185	n:130000
Cons ci ratio: 2.213038e-01	ci left: 2.141321e-03	ci right 2.681257e-03	k: 312	n:130000
KS ci ratio: 9.045238e-03	ci left: 5.882754e-01	ci right 5.936283e-01	k: 76824	n:130000
FAM189A2   130000 perm   27 sec   (4746 perm/sec)   p_kst 5.909538e-01   p_cons 2.400000e-03   p_joint 1.680769e-02

Joint ci ratio: 7.929396e-02	ci left: 1.647636e-02	ci right 1.784374e-02	k: 2401	n:140000
Cons ci ratio: 2.126465e-01	ci left: 2.163998e-03	ci right 2.685524e-03	k: 338	n:140000
KS ci ratio: 8.725688e-03	ci left: 5.878472e-01	ci right 5.930062e-01	k: 82660	n:140000
FAM189A2   140000 perm   30 sec   (4645 perm/sec)   p_kst 5.904286e-01   p_cons 2.414286e-03   p_joint 1.715000e-02

Joint ci ratio: 7.313367e-02	ci left: 1.810556e-02	ci right 1.948646e-02	k: 2818	n:150000
Cons ci ratio: 2.063534e-01	ci left: 2.152386e-03	ci right 2.653824e-03	k: 359	n:150000
KS ci ratio: 8.433456e-03	ci left: 5.877262e-01	ci right 5.927103e-01	k: 88533	n:150000
FAM189A2   150000 perm   33 sec   (4564 perm/sec)   p_kst 5.902200e-01   p_cons 2.393333e-03   p_joint 1.878667e-02

Joint ci ratio: 8.054589e-02	ci left: 1.399958e-02	ci right 1.518060e-02	k: 2333	n:160000
Cons ci ratio: 1.998008e-01	ci left: 2.160237e-03	ci right 2.645576e-03	k: 383	n:160000
KS ci ratio: 8.166211e-03	ci left: 5.877730e-01	ci right 5.925987e-01	k: 94430	n:160000
FAM189A2   160000 perm   36 sec   (4491 perm/sec)   p_kst 5.901875e-01   p_cons 2.393750e-03   p_joint 1.458125e-02

Joint ci ratio: 8.152463e-02	ci left: 1.287033e-02	ci right 1.396989e-02	k: 2280	n:170000
Cons ci ratio: 1.935977e-01	ci left: 2.172983e-03	ci right 2.644243e-03	k: 408	n:170000
KS ci ratio: 7.925945e-03	ci left: 5.876281e-01	ci right 5.923100e-01	k: 100295	n:170000
FAM189A2   170000 perm   39 sec   (4413 perm/sec)   p_kst 5.899706e-01   p_cons 2.400000e-03   p_joint 1.341176e-02

Joint ci ratio: 7.909796e-02	ci left: 1.292837e-02	ci right 1.399850e-02	k: 2422	n:180000
Cons ci ratio: 1.864373e-01	ci left: 2.221590e-03	ci right 2.683557e-03	k: 440	n:180000
KS ci ratio: 7.702965e-03	ci left: 5.876736e-01	ci right 5.922235e-01	k: 106191	n:180000
FAM189A2   180000 perm   42 sec   (4337 perm/sec)   p_kst 5.899500e-01   p_cons 2.444444e-03   p_joint 1.345556e-02

Joint ci ratio: 6.572336e-02	ci left: 1.777454e-02	ci right 1.898759e-02	k: 3491	n:190000
Cons ci ratio: 1.798264e-01	ci left: 2.270393e-03	ci right 2.723946e-03	k: 473	n:190000
KS ci ratio: 7.506778e-03	ci left: 5.871366e-01	ci right 5.915659e-01	k: 111977	n:190000
FAM189A2   190000 perm   45 sec   (4264 perm/sec)   p_kst 5.893526e-01   p_cons 2.489474e-03   p_joint 1.837368e-02

Joint ci ratio: 6.623842e-02	ci left: 1.663961e-02	ci right 1.778444e-02	k: 3441	n:200000
Cons ci ratio: 1.765093e-01	ci left: 2.242857e-03	ci right 2.681762e-03	k: 491	n:200000
KS ci ratio: 7.317198e-03	ci left: 5.871602e-01	ci right 5.914773e-01	k: 117864	n:200000
FAM189A2   200000 perm   48 sec   (4198 perm/sec)   p_kst 5.893200e-01   p_cons 2.455000e-03   p_joint 1.720500e-02

Joint ci ratio: 7.270867e-02	ci left: 1.315573e-02	ci right 1.415300e-02	k: 2866	n:210000
Cons ci ratio: 1.695780e-01	ci left: 2.322847e-03	ci right 2.757732e-03	k: 532	n:210000
KS ci ratio: 7.144383e-03	ci left: 5.869731e-01	ci right 5.911864e-01	k: 123707	n:210000
FAM189A2   210000 perm   51 sec   (4134 perm/sec)   p_kst 5.890810e-01   p_cons 2.533333e-03   p_joint 1.364762e-02

Joint ci ratio: 7.119968e-02	ci left: 1.310676e-02	ci right 1.407884e-02	k: 2989	n:220000
Cons ci ratio: 1.654389e-01	ci left: 2.334847e-03	ci right 2.760247e-03	k: 559	n:220000
KS ci ratio: 6.982602e-03	ci left: 5.868496e-01	ci right 5.909662e-01	k: 129560	n:220000
FAM189A2   220000 perm   54 sec   (4069 perm/sec)   p_kst 5.889091e-01   p_cons 2.540909e-03   p_joint 1.358636e-02

Joint ci ratio: 7.014728e-02	ci left: 1.292552e-02	ci right 1.386941e-02	k: 3080	n:230000
Cons ci ratio: 1.621436e-01	ci left: 2.329233e-03	ci right 2.744332e-03	k: 582	n:230000
KS ci ratio: 6.827716e-03	ci left: 5.869946e-01	ci right 5.910205e-01	k: 135472	n:230000
FAM189A2   230000 perm   57 sec   (4002 perm/sec)   p_kst 5.890087e-01   p_cons 2.530435e-03   p_joint 1.339130e-02

Joint ci ratio: 6.857264e-02	ci left: 1.297246e-02	ci right 1.389767e-02	k: 3223	n:240000
Cons ci ratio: 1.577382e-01	ci left: 2.364182e-03	ci right 2.772979e-03	k: 615	n:240000
KS ci ratio: 6.683448e-03	ci left: 5.870743e-01	ci right 5.910152e-01	k: 141371	n:240000
FAM189A2   240000 perm   61 sec   (3948 perm/sec)   p_kst 5.890458e-01   p_cons 2.562500e-03   p_joint 1.342917e-02

Joint ci ratio: 6.711970e-02	ci left: 1.300801e-02	ci right 1.391533e-02	k: 3364	n:250000
Cons ci ratio: 1.537921e-01	ci left: 2.392628e-03	ci right 2.795041e-03	k: 647	n:250000
KS ci ratio: 6.551958e-03	ci left: 5.868522e-01	ci right 5.907138e-01	k: 147196	n:250000
FAM189A2   250000 perm   65 sec   (3875 perm/sec)   p_kst 5.887840e-01   p_cons 2.588000e-03   p_joint 1.345600e-02

Joint ci ratio: 6.690605e-02	ci left: 1.259459e-02	ci right 1.347016e-02	k: 3387	n:260000
Cons ci ratio: 1.519308e-01	ci left: 2.359786e-03	ci right 2.751434e-03	k: 663	n:260000
KS ci ratio: 6.427421e-03	ci left: 5.866864e-01	ci right 5.904732e-01	k: 153031	n:260000
FAM189A2   260000 perm   68 sec   (3826 perm/sec)   p_kst 5.885808e-01   p_cons 2.550000e-03   p_joint 1.302692e-02

Joint ci ratio: 6.526467e-02	ci left: 1.275466e-02	ci right 1.361880e-02	k: 3559	n:270000
Cons ci ratio: 1.481820e-01	ci left: 2.393588e-03	ci right 2.780176e-03	k: 697	n:270000
KS ci ratio: 6.303647e-03	ci left: 5.870005e-01	ci right 5.907161e-01	k: 158992	n:270000
FAM189A2   270000 perm   71 sec   (3779 perm/sec)   p_kst 5.888593e-01   p_cons 2.581481e-03   p_joint 1.318148e-02

Joint ci ratio: 6.409613e-02	ci left: 1.275943e-02	ci right 1.360783e-02	k: 3690	n:280000
Cons ci ratio: 1.451956e-01	ci left: 2.407874e-03	ci right 2.788252e-03	k: 726	n:280000
KS ci ratio: 6.190041e-03	ci left: 5.870355e-01	ci right 5.906841e-01	k: 164881	n:280000
FAM189A2   280000 perm   75 sec   (3728 perm/sec)   p_kst 5.888607e-01   p_cons 2.592857e-03   p_joint 1.317857e-02

Joint ci ratio: 6.292149e-02	ci left: 1.279116e-02	ci right 1.362551e-02	k: 3829	n:290000
Cons ci ratio: 1.427620e-01	ci left: 2.407945e-03	ci right 2.781416e-03	k: 751	n:290000
KS ci ratio: 6.080847e-03	ci left: 5.871894e-01	ci right 5.907743e-01	k: 170805	n:290000
FAM189A2   290000 perm   79 sec   (3679 perm/sec)   p_kst 5.889828e-01   p_cons 2.589655e-03   p_joint 1.320345e-02

Joint ci ratio: 6.197552e-02	ci left: 1.275197e-02	ci right 1.357081e-02	k: 3947	n:300000
Cons ci ratio: 1.412694e-01	ci left: 2.379116e-03	ci right 2.743932e-03	k: 767	n:300000
KS ci ratio: 5.980611e-03	ci left: 5.870601e-01	ci right 5.905849e-01	k: 176647	n:300000
FAM189A2   300000 perm   83 sec   (3629 perm/sec)   p_kst 5.888233e-01   p_cons 2.556667e-03   p_joint 1.315667e-02

Joint ci ratio: 6.088912e-02	ci left: 1.279165e-02	ci right 1.359814e-02	k: 4089	n:310000
Cons ci ratio: 1.386747e-01	ci left: 2.392644e-03	ci right 2.752239e-03	k: 796	n:310000
KS ci ratio: 5.882114e-03	ci left: 5.871913e-01	ci right 5.906586e-01	k: 182567	n:310000
FAM189A2   310000 perm   86 sec   (3585 perm/sec)   p_kst 5.889258e-01   p_cons 2.567742e-03   p_joint 1.319032e-02

Joint ci ratio: 6.000899e-02	ci left: 1.276431e-02	ci right 1.355704e-02	k: 4210	n:320000
Cons ci ratio: 1.363006e-01	ci left: 2.402365e-03	ci right 2.756739e-03	k: 824	n:320000
KS ci ratio: 5.790384e-03	ci left: 5.871428e-01	ci right 5.905556e-01	k: 188432	n:320000
FAM189A2   320000 perm   90 sec   (3541 perm/sec)   p_kst 5.888500e-01   p_cons 2.575000e-03   p_joint 1.315625e-02

Joint ci ratio: 5.889787e-02	ci left: 1.285517e-02	ci right 1.363826e-02	k: 4370	n:330000
Cons ci ratio: 1.342023e-01	ci left: 2.405688e-03	ci right 2.754653e-03	k: 850	n:330000
KS ci ratio: 5.701887e-03	ci left: 5.871765e-01	ci right 5.905371e-01	k: 194323	n:330000
FAM189A2   330000 perm   94 sec   (3494 perm/sec)   p_kst 5.888576e-01   p_cons 2.575758e-03   p_joint 1.324242e-02

Joint ci ratio: 5.914295e-02	ci left: 1.237847e-02	ci right 1.313575e-02	k: 4336	n:340000
Cons ci ratio: 1.321980e-01	ci left: 2.408855e-03	ci right 2.752651e-03	k: 876	n:340000
KS ci ratio: 5.617976e-03	ci left: 5.871527e-01	ci right 5.904635e-01	k: 200195	n:340000
FAM189A2   340000 perm   99 sec   (3451 perm/sec)   p_kst 5.888088e-01   p_cons 2.576471e-03   p_joint 1.275294e-02

Joint ci ratio: 5.824939e-02	ci left: 1.240204e-02	ci right 1.314892e-02	k: 4470	n:350000
Cons ci ratio: 1.306440e-01	ci left: 2.398057e-03	ci right 2.735977e-03	k: 897	n:350000
KS ci ratio: 5.539755e-03	ci left: 5.869476e-01	ci right 5.902110e-01	k: 206003	n:350000
FAM189A2   350000 perm   103 sec   (3411 perm/sec)   p_kst 5.885800e-01   p_cons 2.562857e-03   p_joint 1.277143e-02

Joint ci ratio: 5.721918e-02	ci left: 1.250106e-02	ci right 1.324015e-02	k: 4632	n:360000
Cons ci ratio: 1.290029e-01	ci left: 2.393258e-03	ci right 2.725941e-03	k: 920	n:360000
KS ci ratio: 5.461327e-03	ci left: 5.870544e-01	ci right 5.902720e-01	k: 211919	n:360000
FAM189A2   360000 perm   107 sec   (3365 perm/sec)   p_kst 5.886639e-01   p_cons 2.555556e-03   p_joint 1.286667e-02

Joint ci ratio: 5.469099e-02	ci left: 1.331991e-02	ci right 1.407152e-02	k: 5066	n:370000
Cons ci ratio: 1.273545e-01	ci left: 2.391360e-03	ci right 2.719210e-03	k: 944	n:370000
KS ci ratio: 5.387881e-03	ci left: 5.869989e-01	ci right 5.901727e-01	k: 217777	n:370000
FAM189A2   370000 perm   111 sec   (3325 perm/sec)   p_kst 5.885865e-01   p_cons 2.551351e-03   p_joint 1.369189e-02

Joint ci ratio: 5.397680e-02	ci left: 1.331982e-02	ci right 1.406130e-02	k: 5201	n:380000
Cons ci ratio: 1.254437e-01	ci left: 2.402333e-03	ci right 2.726379e-03	k: 973	n:380000
KS ci ratio: 5.316339e-03	ci left: 5.870361e-01	ci right 5.901678e-01	k: 223669	n:380000
FAM189A2   380000 perm   116 sec   (3287 perm/sec)   p_kst 5.886026e-01   p_cons 2.560526e-03   p_joint 1.368684e-02

Joint ci ratio: 5.330508e-02	ci left: 1.331221e-02	ci right 1.404376e-02	k: 5333	n:390000
Cons ci ratio: 1.243016e-01	ci left: 2.385446e-03	ci right 2.704068e-03	k: 991	n:390000
KS ci ratio: 5.249100e-03	ci left: 5.869305e-01	ci right 5.900220e-01	k: 229506	n:390000
FAM189A2   390000 perm   120 sec   (3250 perm/sec)   p_kst 5.884769e-01   p_cons 2.541026e-03   p_joint 1.367436e-02

Joint ci ratio: 5.255557e-02	ci left: 1.335685e-02	ci right 1.408022e-02	k: 5486	n:400000
Cons ci ratio: 1.230071e-01	ci left: 2.376685e-03	ci right 2.690590e-03	k: 1012	n:400000
KS ci ratio: 5.184537e-03	ci left: 5.868130e-01	ci right 5.898657e-01	k: 235336	n:400000
FAM189A2   400000 perm   124 sec   (3213 perm/sec)   p_kst 5.883400e-01   p_cons 2.530000e-03   p_joint 1.371500e-02

Joint ci ratio: 5.185545e-02	ci left: 1.338975e-02	ci right 1.410495e-02	k: 5635	n:410000
Cons ci ratio: 1.215168e-01	ci left: 2.377828e-03	ci right 2.687806e-03	k: 1037	n:410000
KS ci ratio: 5.122685e-03	ci left: 5.866648e-01	ci right 5.896803e-01	k: 241151	n:410000
FAM189A2   410000 perm   129 sec   (3178 perm/sec)   p_kst 5.881732e-01   p_cons 2.529268e-03   p_joint 1.374390e-02

Joint ci ratio: 5.130411e-02	ci left: 1.335767e-02	ci right 1.406335e-02	k: 5757	n:420000
Cons ci ratio: 1.204778e-01	ci left: 2.362772e-03	ci right 2.667965e-03	k: 1055	n:420000
KS ci ratio: 5.064959e-03	ci left: 5.863358e-01	ci right 5.893154e-01	k: 246887	n:420000
FAM189A2   420000 perm   134 sec   (3144 perm/sec)   p_kst 5.878262e-01   p_cons 2.511905e-03   p_joint 1.370714e-02

Joint ci ratio: 5.065656e-02	ci left: 1.338683e-02	ci right 1.408486e-02	k: 5905	n:430000
Cons ci ratio: 1.187466e-01	ci left: 2.377761e-03	ci right 2.680167e-03	k: 1086	n:430000
KS ci ratio: 5.005821e-03	ci left: 5.863433e-01	ci right 5.892881e-01	k: 252761	n:430000
FAM189A2   430000 perm   138 sec   (3108 perm/sec)   p_kst 5.878163e-01   p_cons 2.525581e-03   p_joint 1.373256e-02

Joint ci ratio: 5.006648e-02	ci left: 1.339676e-02	ci right 1.408694e-02	k: 6045	n:440000
Cons ci ratio: 1.174572e-01	ci left: 2.376655e-03	ci right 2.675411e-03	k: 1110	n:440000
KS ci ratio: 4.949635e-03	ci left: 5.862597e-01	ci right 5.891709e-01	k: 258595	n:440000
FAM189A2   440000 perm   143 sec   (3075 perm/sec)   p_kst 5.877159e-01   p_cons 2.522727e-03   p_joint 1.373864e-02

Joint ci ratio: 4.943985e-02	ci left: 1.343702e-02	ci right 1.412037e-02	k: 6199	n:450000
Cons ci ratio: 1.158004e-01	ci left: 2.392878e-03	ci right 2.689141e-03	k: 1142	n:450000
KS ci ratio: 4.894917e-03	ci left: 5.862179e-01	ci right 5.890966e-01	k: 264446	n:450000
FAM189A2   450000 perm   148 sec   (3042 perm/sec)   p_kst 5.876578e-01   p_cons 2.537778e-03   p_joint 1.377556e-02

Joint ci ratio: 4.890646e-02	ci left: 1.343693e-02	ci right 1.411269e-02	k: 6335	n:460000
Cons ci ratio: 1.141632e-01	ci left: 2.410536e-03	ci right 2.704481e-03	k: 1175	n:460000
KS ci ratio: 4.840781e-03	ci left: 5.862976e-01	ci right 5.891448e-01	k: 270352	n:460000
FAM189A2   460000 perm   153 sec   (3010 perm/sec)   p_kst 5.877217e-01   p_cons 2.554348e-03   p_joint 1.377174e-02

Joint ci ratio: 4.838619e-02	ci left: 1.343898e-02	ci right 1.410746e-02	k: 6472	n:470000
Cons ci ratio: 1.129688e-01	ci left: 2.410929e-03	ci right 2.701641e-03	k: 1200	n:470000
KS ci ratio: 4.789831e-03	ci left: 5.862294e-01	ci right 5.890461e-01	k: 276190	n:470000
FAM189A2   470000 perm   158 sec   (2977 perm/sec)   p_kst 5.876383e-01   p_cons 2.553191e-03   p_joint 1.377021e-02

Joint ci ratio: 4.782351e-02	ci left: 1.347393e-02	ci right 1.413613e-02	k: 6625	n:480000
Cons ci ratio: 1.114019e-01	ci left: 2.429548e-03	ci right 2.718175e-03	k: 1234	n:480000
KS ci ratio: 4.740396e-03	ci left: 5.861704e-01	ci right 5.889577e-01	k: 282031	n:480000
FAM189A2   480000 perm   163 sec   (2946 perm/sec)   p_kst 5.875646e-01   p_cons 2.570833e-03   p_joint 1.380208e-02

Joint ci ratio: 4.733315e-02	ci left: 1.347723e-02	ci right 1.413262e-02	k: 6763	n:490000
Cons ci ratio: 1.101162e-01	ci left: 2.437510e-03	ci right 2.723524e-03	k: 1263	n:490000
KS ci ratio: 4.692321e-03	ci left: 5.861283e-01	ci right 5.888870e-01	k: 287879	n:490000
FAM189A2   490000 perm   168 sec   (2917 perm/sec)   p_kst 5.875082e-01   p_cons 2.577551e-03   p_joint 1.380204e-02

Joint ci ratio: 4.689548e-02	ci left: 1.345869e-02	ci right 1.410696e-02	k: 6890	n:500000
Cons ci ratio: 1.094698e-01	ci left: 2.417935e-03	ci right 2.699879e-03	k: 1278	n:500000
KS ci ratio: 4.645470e-03	ci left: 5.861100e-01	ci right 5.888410e-01	k: 293738	n:500000
FAM189A2   500000 perm   173 sec   (2887 perm/sec)   p_kst 5.874760e-01   p_cons 2.556000e-03   p_joint 1.378000e-02

Joint ci ratio: 4.646973e-02	ci left: 1.344091e-02	ci right 1.408228e-02	k: 7017	n:510000
Cons ci ratio: 1.082906e-01	ci left: 2.423931e-03	ci right 2.703336e-03	k: 1306	n:510000
KS ci ratio: 4.600161e-03	ci left: 5.860749e-01	ci right 5.887790e-01	k: 299588	n:510000
FAM189A2   510000 perm   178 sec   (2858 perm/sec)   p_kst 5.874275e-01   p_cons 2.560784e-03   p_joint 1.375882e-02

Joint ci ratio: 4.602598e-02	ci left: 1.344094e-02	ci right 1.407603e-02	k: 7153	n:520000
Cons ci ratio: 1.069481e-01	ci left: 2.439072e-03	ci right 2.716517e-03	k: 1339	n:520000
KS ci ratio: 4.557491e-03	ci left: 5.858989e-01	ci right 5.885771e-01	k: 305364	n:520000
FAM189A2   520000 perm   184 sec   (2830 perm/sec)   p_kst 5.872385e-01   p_cons 2.575000e-03   p_joint 1.375577e-02

Joint ci ratio: 4.553773e-02	ci left: 1.347458e-02	ci right 1.410433e-02	k: 7307	n:530000
Cons ci ratio: 1.054619e-01	ci left: 2.462847e-03	ci right 2.738862e-03	k: 1377	n:530000
KS ci ratio: 4.515089e-03	ci left: 5.858259e-01	ci right 5.884788e-01	k: 311191	n:530000
FAM189A2   530000 perm   189 sec   (2800 perm/sec)   p_kst 5.871528e-01   p_cons 2.598113e-03   p_joint 1.378679e-02

Joint ci ratio: 4.037873e-02	ci left: 1.680722e-02	ci right 1.750168e-02	k: 9262	n:540000
Cons ci ratio: 1.043691e-01	ci left: 2.469533e-03	ci right 2.743254e-03	k: 1406	n:540000
KS ci ratio: 4.472942e-03	ci left: 5.858540e-01	ci right 5.884821e-01	k: 317071	n:540000
FAM189A2   540000 perm   195 sec   (2770 perm/sec)   p_kst 5.871685e-01   p_cons 2.603704e-03   p_joint 1.715185e-02

Joint ci ratio: 4.468351e-02	ci left: 1.349154e-02	ci right 1.410996e-02	k: 7589	n:550000
Cons ci ratio: 1.031657e-01	ci left: 2.483076e-03	ci right 2.754932e-03	k: 1439	n:550000
KS ci ratio: 4.433384e-03	ci left: 5.857247e-01	ci right 5.883290e-01	k: 322865	n:550000
FAM189A2   550000 perm   201 sec   (2742 perm/sec)   p_kst 5.870273e-01   p_cons 2.616364e-03   p_joint 1.379818e-02

Joint ci ratio: 3.967861e-02	ci left: 1.679035e-02	ci right 1.747180e-02	k: 9592	n:560000
Cons ci ratio: 1.021769e-01	ci left: 2.487452e-03	ci right 2.757020e-03	k: 1467	n:560000
KS ci ratio: 4.393594e-03	ci left: 5.857395e-01	ci right 5.883204e-01	k: 328737	n:560000
FAM189A2   560000 perm   206 sec   (2714 perm/sec)   p_kst 5.870304e-01   p_cons 2.619643e-03   p_joint 1.712857e-02

Joint ci ratio: 3.935630e-02	ci left: 1.677023e-02	ci right 1.744522e-02	k: 9750	n:570000
Cons ci ratio: 1.014543e-01	ci left: 2.479716e-03	ci right 2.746432e-03	k: 1488	n:570000
KS ci ratio: 4.354715e-03	ci left: 5.857696e-01	ci right 5.883277e-01	k: 334618	n:570000
FAM189A2   570000 perm   212 sec   (2686 perm/sec)   p_kst 5.870491e-01   p_cons 2.610526e-03   p_joint 1.710526e-02

Joint ci ratio: 4.442178e-02	ci left: 1.295389e-02	ci right 1.354409e-02	k: 7683	n:580000
Cons ci ratio: 1.007133e-01	ci left: 2.473934e-03	ci right 2.737970e-03	k: 1510	n:580000
KS ci ratio: 4.316620e-03	ci left: 5.858247e-01	ci right 5.883606e-01	k: 340514	n:580000
FAM189A2   580000 perm   218 sec   (2660 perm/sec)   p_kst 5.870931e-01   p_cons 2.603448e-03   p_joint 1.324655e-02

Joint ci ratio: 4.399948e-02	ci left: 1.298241e-02	ci right 1.356814e-02	k: 7831	n:590000
Cons ci ratio: 9.969543e-02	ci left: 2.483229e-03	ci right 2.745422e-03	k: 1541	n:590000
KS ci ratio: 4.278998e-03	ci left: 5.859357e-01	ci right 5.884499e-01	k: 346444	n:590000
FAM189A2   590000 perm   224 sec   (2634 perm/sec)   p_kst 5.871932e-01   p_cons 2.611864e-03   p_joint 1.327288e-02

Outputting figure to mutsig2_images.part000000000061/FAM189A2.3_1393_590000_0.58719_0.0026119_0.013273.png
                gene_name: FAM189A2
               theta_stop: 0.100 
                    nperm: 590000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.0026 
      ci_cons_bounds_left: 0.0025 
     ci_cons_bounds_right: 0.0027 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 63 percent done.
FAM196A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.941013e-02	ci left: 6.303014e-01	ci right 6.492171e-01	k: 6398	n:10000
Cons ci ratio: 5.914541e-02	ci left: 2.960832e-01	ci right 3.142305e-01	k: 3051	n:10000
KS ci ratio: 1.891855e-02	ci left: 8.032880e-01	ci right 8.187304e-01	k: 8111	n:10000
FAM196A   10000 perm   1 sec   (6921 perm/sec)   p_kst 8.111000e-01   p_cons 3.051000e-01   p_joint 6.398000e-01

Outputting figure to mutsig2_images.part000000000061/FAM196A.3_1452_10000_0.8111_0.3051_0.6398.png
                gene_name: FAM196A
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 65 percent done.
FAM20A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.918611e-02	ci left: 1.546314e-01	ci right 1.691662e-01	k: 1618	n:10000
Cons ci ratio: 2.246886e-02	ci left: 7.441210e-01	ci right 7.611316e-01	k: 7527	n:10000
KS ci ratio: 1.453474e-01	ci left: 6.285242e-02	ci right 7.280114e-02	k: 677	n:10000
FAM20A   10000 perm   1 sec   (6689 perm/sec)   p_kst 6.770000e-02   p_cons 7.527000e-01   p_joint 1.618000e-01

Joint ci ratio: 8.041197e-02	ci left: 1.019135e-01	ci right 1.105014e-01	k: 2123	n:20000
Cons ci ratio: 1.587306e-02	ci left: 7.470119e-01	ci right 7.590144e-01	k: 15061	n:20000
KS ci ratio: 1.042287e-01	ci left: 6.259732e-02	ci right 6.952949e-02	k: 1320	n:20000
FAM20A   20000 perm   3 sec   (5963 perm/sec)   p_kst 6.600000e-02   p_cons 7.530500e-01   p_joint 1.061500e-01

Joint ci ratio: 5.944428e-02	ci left: 1.228239e-01	ci right 1.303819e-01	k: 3797	n:30000
Cons ci ratio: 1.297833e-02	ci left: 7.476091e-01	ci right 7.574086e-01	k: 22576	n:30000
KS ci ratio: 8.553125e-02	ci left: 6.262789e-02	ci right 6.825662e-02	k: 1962	n:30000
FAM20A   30000 perm   5 sec   (5696 perm/sec)   p_kst 6.540000e-02   p_cons 7.525333e-01   p_joint 1.265667e-01

Outputting figure to mutsig2_images.part000000000061/FAM20A.3_1670_30000_0.0654_0.75253_0.12657.png
                gene_name: FAM20A
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 67 percent done.
FAM46B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.073636e-01	ci left: 3.091404e-02	ci right 3.816041e-02	k: 344	n:10000
Cons ci ratio: 2.013935e-01	ci left: 3.281488e-02	ci right 4.025825e-02	k: 364	n:10000
KS ci ratio: 8.843771e-02	ci left: 1.568896e-01	ci right 1.715066e-01	k: 1641	n:10000
FAM46B   10000 perm   1 sec   (7152 perm/sec)   p_kst 1.641000e-01   p_cons 3.640000e-02   p_joint 3.440000e-02

Joint ci ratio: 1.049967e-01	ci left: 6.171935e-02	ci right 6.860773e-02	k: 1302	n:20000
Cons ci ratio: 1.394623e-01	ci left: 3.534423e-02	ci right 4.069115e-02	k: 759	n:20000
KS ci ratio: 6.311159e-02	ci left: 1.565725e-01	ci right 1.668260e-01	k: 3233	n:20000
FAM46B   20000 perm   3 sec   (6022 perm/sec)   p_kst 1.616500e-01   p_cons 3.795000e-02   p_joint 6.510000e-02

Joint ci ratio: 1.114056e-01	ci left: 3.742123e-02	ci right 4.186849e-02	k: 1188	n:30000
Cons ci ratio: 1.142364e-01	ci left: 3.560529e-02	ci right 3.995148e-02	k: 1132	n:30000
KS ci ratio: 5.152433e-02	ci left: 1.575500e-01	ci right 1.659156e-01	k: 4851	n:30000
FAM46B   30000 perm   5 sec   (5806 perm/sec)   p_kst 1.617000e-01   p_cons 3.773333e-02   p_joint 3.960000e-02

Joint ci ratio: 9.482145e-02	ci left: 3.902881e-02	ci right 4.293818e-02	k: 1638	n:40000
Cons ci ratio: 1.007360e-01	ci left: 3.463466e-02	ci right 3.833302e-02	k: 1458	n:40000
KS ci ratio: 4.453256e-02	ci left: 1.586491e-01	ci right 1.659000e-01	k: 6490	n:40000
FAM46B   40000 perm   7 sec   (5630 perm/sec)   p_kst 1.622500e-01   p_cons 3.645000e-02   p_joint 4.095000e-02

Joint ci ratio: 6.723274e-02	ci left: 6.151569e-02	ci right 6.581513e-02	k: 3182	n:50000
Cons ci ratio: 9.095222e-02	ci left: 3.418849e-02	ci right 3.746568e-02	k: 1790	n:50000
KS ci ratio: 3.980119e-02	ci left: 1.592364e-01	ci right 1.657228e-01	k: 8123	n:50000
FAM46B   50000 perm   9 sec   (5502 perm/sec)   p_kst 1.624600e-01   p_cons 3.580000e-02   p_joint 6.364000e-02

Outputting figure to mutsig2_images.part000000000061/FAM46B.3_1286_50000_0.16246_0.0358_0.06364.png
                gene_name: FAM46B
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.066 

Current progress: 69 percent done.
FAM164A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
Cons ci ratio: 3.040012e-02	ci left: 6.148232e-01	ci right 6.339043e-01	k: 6244	n:10000
KS ci ratio: 7.419881e-02	ci left: 2.100392e-01	ci right 2.263253e-01	k: 2181	n:10000
FAM164A   10000 perm   1 sec   (7338 perm/sec)   p_kst 2.181000e-01   p_cons 6.244000e-01   p_joint 5.242000e-01

Outputting figure to mutsig2_images.part000000000061/FAM164A.2_1014_10000_0.2181_0.6244_0.5242.png
                gene_name: FAM164A
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 71 percent done.
FAM172A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.284443e-02	ci left: 8.971340e-01	ci right 9.088300e-01	k: 9031	n:10000
KS ci ratio: 1.090088e-01	ci left: 1.082244e-01	ci right 1.208011e-01	k: 1144	n:10000
FAM172A   10000 perm   1 sec   (7227 perm/sec)   p_kst 1.144000e-01   p_cons 9.031000e-01   p_joint 1

Joint ci ratio: 1.559779e-02	ci left: 7.535144e-01	ci right 7.654101e-01	k: 15190	n:20000
Cons ci ratio: 9.575993e-03	ci left: 8.890407e-01	ci right 8.976446e-01	k: 17868	n:20000
KS ci ratio: 7.713935e-02	ci left: 1.099217e-01	ci right 1.187908e-01	k: 2286	n:20000
FAM172A   20000 perm   3 sec   (6416 perm/sec)   p_kst 1.143000e-01   p_cons 8.934000e-01   p_joint 7.595000e-01

Outputting figure to mutsig2_images.part000000000061/FAM172A.2_1291_20000_0.1143_0.8934_0.7595.png
                gene_name: FAM172A
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 73 percent done.
FAM175B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.060133e-02	ci left: 6.117087e-01	ci right 6.308206e-01	k: 6213	n:10000
KS ci ratio: 2.851646e-02	ci left: 6.444822e-01	ci right 6.632281e-01	k: 6539	n:10000
FAM175B   10000 perm   1 sec   (7315 perm/sec)   p_kst 6.539000e-01   p_cons 6.213000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM175B.2_1284_10000_0.6539_0.6213_1.png
                gene_name: FAM175B
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
FAM180A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.759258e-02	ci left: 3.073885e-01	ci right 3.257185e-01	k: 3165	n:10000
KS ci ratio: 9.635105e-03	ci left: 9.383791e-01	ci right 9.475607e-01	k: 9431	n:10000
FAM180A   10000 perm   1 sec   (7765 perm/sec)   p_kst 9.431000e-01   p_cons 3.165000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM180A.2_534_10000_0.9431_0.3165_1.png
                gene_name: FAM180A
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
FAM183A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.149354e-02	ci left: 9.154367e-01	ci right 9.261167e-01	k: 9209	n:10000
KS ci ratio: 5.026381e-02	ci left: 3.685825e-01	ci right 3.876885e-01	k: 3781	n:10000
FAM183A   10000 perm   1 sec   (8222 perm/sec)   p_kst 3.781000e-01   p_cons 9.209000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM183A.2_421_10000_0.3781_0.9209_1.png
                gene_name: FAM183A
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
FAM189B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.366775e-01	ci left: 7.078334e-02	ci right 8.126524e-02	k: 759	n:10000
Cons ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
KS ci ratio: 5.098745e-02	ci left: 3.619185e-01	ci right 3.809565e-01	k: 3714	n:10000
FAM189B   10000 perm   1 sec   (6804 perm/sec)   p_kst 3.714000e-01   p_cons 4.130000e-02   p_joint 7.590000e-02

Joint ci ratio: 1.038086e-01	ci left: 6.308517e-02	ci right 7.004149e-02	k: 1330	n:20000
Cons ci ratio: 1.333766e-01	ci left: 3.863255e-02	ci right 4.420178e-02	k: 827	n:20000
KS ci ratio: 3.548508e-02	ci left: 3.721698e-01	ci right 3.856654e-01	k: 7578	n:20000
FAM189B   20000 perm   3 sec   (6068 perm/sec)   p_kst 3.789000e-01   p_cons 4.135000e-02   p_joint 6.650000e-02

Joint ci ratio: 1.034592e-01	ci left: 4.329927e-02	ci right 4.805588e-02	k: 1369	n:30000
Cons ci ratio: 1.097345e-01	ci left: 3.855687e-02	ci right 4.306594e-02	k: 1223	n:30000
KS ci ratio: 2.882521e-02	ci left: 3.758321e-01	ci right 3.868575e-01	k: 11440	n:30000
FAM189B   30000 perm   5 sec   (5724 perm/sec)   p_kst 3.813333e-01   p_cons 4.076667e-02   p_joint 4.563333e-02

Joint ci ratio: 8.358026e-02	ci left: 4.994228e-02	ci right 5.432303e-02	k: 2084	n:40000
Cons ci ratio: 9.023896e-02	ci left: 4.301351e-02	ci right 4.710286e-02	k: 1801	n:40000
KS ci ratio: 2.482328e-02	ci left: 3.792298e-01	ci right 3.887870e-01	k: 15360	n:40000
FAM189B   40000 perm   7 sec   (5548 perm/sec)   p_kst 3.840000e-01   p_cons 4.502500e-02   p_joint 5.210000e-02

Outputting figure to mutsig2_images.part000000000061/FAM189B.2_2055_40000_0.384_0.045025_0.0521.png
                gene_name: FAM189B
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.054 

Current progress: 82 percent done.
FAM192A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.540060e-02	ci left: 2.555781e-01	ci right 2.729595e-01	k: 2642	n:10000
Cons ci ratio: 7.989902e-02	ci left: 1.861912e-01	ci right 2.017874e-01	k: 1939	n:10000
KS ci ratio: 3.219017e-02	ci left: 5.875100e-01	ci right 6.068334e-01	k: 5972	n:10000
FAM192A   10000 perm   1 sec   (7446 perm/sec)   p_kst 5.972000e-01   p_cons 1.939000e-01   p_joint 2.642000e-01

Outputting figure to mutsig2_images.part000000000061/FAM192A.2_789_10000_0.5972_0.1939_0.2642.png
                gene_name: FAM192A
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 84 percent done.
FAM199X
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.094038e-02	ci left: 6.064853e-01	ci right 6.256470e-01	k: 6161	n:10000
KS ci ratio: 1.670107e-02	ci left: 8.391823e-01	ci right 8.534153e-01	k: 8464	n:10000
FAM199X   10000 perm   1 sec   (7419 perm/sec)   p_kst 8.464000e-01   p_cons 6.161000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM199X.2_1191_10000_0.8464_0.6161_1.png
                gene_name: FAM199X
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
FAM19A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.239972e-02	ci left: 9.032959e-01	ci right 9.146645e-01	k: 9091	n:10000
KS ci ratio: 5.076116e-03	ci left: 9.809150e-01	ci right 9.859977e-01	k: 9836	n:10000
FAM19A2   10000 perm   1 sec   (7721 perm/sec)   p_kst 9.836000e-01   p_cons 9.091000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM19A2.2_412_10000_0.9836_0.9091_1.png
                gene_name: FAM19A2
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
FAM20B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.234243e-03	ci left: 9.429466e-01	ci right 9.517905e-01	k: 9475	n:10000
Cons ci ratio: 5.855114e-02	ci left: 3.003467e-01	ci right 3.185644e-01	k: 3094	n:10000
KS ci ratio: 1.639828e-02	ci left: 8.439706e-01	ci right 8.580243e-01	k: 8511	n:10000
FAM20B   10000 perm   1 sec   (7164 perm/sec)   p_kst 8.511000e-01   p_cons 3.094000e-01   p_joint 9.475000e-01

Outputting figure to mutsig2_images.part000000000061/FAM20B.2_1258_10000_0.8511_0.3094_0.9475.png
                gene_name: FAM20B
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 90 percent done.
FAM21B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.861839e-02	ci left: 4.975503e-01	ci right 5.172454e-01	k: 5074	n:10000
Cons ci ratio: 5.621107e-02	ci left: 3.179062e-01	ci right 3.363946e-01	k: 3271	n:10000
KS ci ratio: 6.849801e-02	ci left: 2.381767e-01	ci right 2.551711e-01	k: 2466	n:10000
FAM21B   10000 perm   2 sec   (4241 perm/sec)   p_kst 2.466000e-01   p_cons 3.271000e-01   p_joint 5.074000e-01

Outputting figure to mutsig2_images.part000000000061/FAM21B.2_7756_10000_0.2466_0.3271_0.5074.png
                gene_name: FAM21B
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 92 percent done.
FAM24A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.513363e-02	ci left: 4.201686e-01	ci right 4.396723e-01	k: 4299	n:10000
KS ci ratio: 1.443746e-02	ci left: 8.740836e-01	ci right 8.868938e-01	k: 8806	n:10000
FAM24A   10000 perm   1 sec   (8379 perm/sec)   p_kst 8.806000e-01   p_cons 4.299000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000061/FAM24A.2_326_10000_0.8806_0.4299_1.png
                gene_name: FAM24A
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
FAM26F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
Cons ci ratio: 1.442374e-02	ci left: 8.742881e-01	ci right 8.870892e-01	k: 8808	n:10000
KS ci ratio: 3.313660e-01	ci left: 1.151417e-02	ci right 1.617538e-02	k: 137	n:10000
FAM26F   10000 perm   1 sec   (7377 perm/sec)   p_kst 1.370000e-02   p_cons 8.808000e-01   p_joint 4.100000e-02

Joint ci ratio: 9.210118e-02	ci left: 7.921235e-02	ci right 8.690937e-02	k: 1660	n:20000
Cons ci ratio: 1.020775e-02	ci left: 8.760257e-01	ci right 8.850634e-01	k: 17612	n:20000
KS ci ratio: 2.448786e-01	ci left: 1.110033e-02	ci right 1.424373e-02	k: 252	n:20000
FAM26F   20000 perm   3 sec   (6485 perm/sec)   p_kst 1.260000e-02   p_cons 8.806000e-01   p_joint 8.300000e-02

Joint ci ratio: 7.963347e-02	ci left: 7.174961e-02	ci right 7.773306e-02	k: 2241	n:30000
Cons ci ratio: 8.274750e-03	ci left: 8.783970e-01	ci right 8.857288e-01	k: 26463	n:30000
KS ci ratio: 1.954299e-01	ci left: 1.193916e-02	ci right 1.455637e-02	k: 396	n:30000
FAM26F   30000 perm   5 sec   (6159 perm/sec)   p_kst 1.320000e-02   p_cons 8.821000e-01   p_joint 7.470000e-02

Joint ci ratio: 9.768437e-02	ci left: 3.680646e-02	ci right 4.061088e-02	k: 1547	n:40000
Cons ci ratio: 7.166014e-03	ci left: 8.788994e-01	ci right 8.852450e-01	k: 35284	n:40000
KS ci ratio: 1.696272e-01	ci left: 1.205658e-02	ci right 1.431491e-02	k: 526	n:40000
FAM26F   40000 perm   7 sec   (5920 perm/sec)   p_kst 1.315000e-02   p_cons 8.821000e-01   p_joint 3.867500e-02

Joint ci ratio: 7.565275e-02	ci left: 4.902886e-02	ci right 5.290349e-02	k: 2547	n:50000
Cons ci ratio: 6.445095e-03	ci left: 8.780692e-01	ci right 8.837665e-01	k: 44047	n:50000
KS ci ratio: 1.499702e-01	ci left: 1.246827e-02	ci right 1.450879e-02	k: 673	n:50000
FAM26F   50000 perm   9 sec   (5758 perm/sec)   p_kst 1.346000e-02   p_cons 8.809400e-01   p_joint 5.094000e-02

Joint ci ratio: 6.588186e-02	ci left: 5.387811e-02	ci right 5.756501e-02	k: 3342	n:60000
Cons ci ratio: 5.879946e-03	ci left: 8.784497e-01	ci right 8.836467e-01	k: 52864	n:60000
KS ci ratio: 1.364596e-01	ci left: 1.264017e-02	ci right 1.450732e-02	k: 813	n:60000
FAM26F   60000 perm   11 sec   (5625 perm/sec)   p_kst 1.355000e-02   p_cons 8.810667e-01   p_joint 5.570000e-02

Joint ci ratio: 6.749490e-02	ci left: 4.441768e-02	ci right 4.753438e-02	k: 3217	n:70000
Cons ci ratio: 5.420591e-03	ci left: 8.795439e-01	ci right 8.843387e-01	k: 61737	n:70000
KS ci ratio: 1.275453e-01	ci left: 1.246445e-02	ci right 1.417625e-02	k: 931	n:70000
FAM26F   70000 perm   13 sec   (5497 perm/sec)   p_kst 1.330000e-02   p_cons 8.819571e-01   p_joint 4.595714e-02

Joint ci ratio: 6.370720e-02	ci left: 4.374609e-02	ci right 4.663701e-02	k: 3614	n:80000
Cons ci ratio: 5.092846e-03	ci left: 8.787740e-01	ci right 8.832733e-01	k: 70483	n:80000
KS ci ratio: 1.200030e-01	ci left: 1.237205e-02	ci right 1.396354e-02	k: 1052	n:80000
FAM26F   80000 perm   15 sec   (5375 perm/sec)   p_kst 1.315000e-02   p_cons 8.810375e-01   p_joint 4.517500e-02

Joint ci ratio: 5.637810e-02	ci left: 4.953875e-02	ci right 5.242361e-02	k: 4587	n:90000
Cons ci ratio: 4.807768e-03	ci left: 8.786317e-01	ci right 8.828771e-01	k: 79269	n:90000
KS ci ratio: 1.136576e-01	ci left: 1.230253e-02	ci right 1.379577e-02	k: 1173	n:90000
FAM26F   90000 perm   17 sec   (5263 perm/sec)   p_kst 1.303333e-02   p_cons 8.807667e-01   p_joint 5.096667e-02

Joint ci ratio: 5.725910e-02	ci left: 4.348663e-02	ci right 4.605986e-02	k: 4476	n:100000
Cons ci ratio: 4.559663e-03	ci left: 8.788059e-01	ci right 8.828320e-01	k: 88083	n:100000
KS ci ratio: 1.073857e-01	ci left: 1.244336e-02	ci right 1.386508e-02	k: 1314	n:100000
FAM26F   100000 perm   19 sec   (5158 perm/sec)   p_kst 1.314000e-02   p_cons 8.808300e-01   p_joint 4.476000e-02

Joint ci ratio: 5.082691e-02	ci left: 4.999462e-02	ci right 5.261092e-02	k: 5642	n:110000
Cons ci ratio: 4.348269e-03	ci left: 8.788614e-01	ci right 8.827003e-01	k: 96887	n:110000
KS ci ratio: 1.018369e-01	ci left: 1.261361e-02	ci right 1.397586e-02	k: 1461	n:110000
FAM26F   110000 perm   22 sec   (5057 perm/sec)   p_kst 1.328182e-02   p_cons 8.807909e-01   p_joint 5.129091e-02

Joint ci ratio: 4.683096e-02	ci left: 5.387329e-02	ci right 5.646493e-02	k: 6619	n:120000
Cons ci ratio: 4.155691e-03	ci left: 8.793224e-01	ci right 8.829925e-01	k: 105740	n:120000
KS ci ratio: 9.847300e-02	ci left: 1.239112e-02	ci right 1.368257e-02	k: 1563	n:120000
FAM26F   120000 perm   24 sec   (4917 perm/sec)   p_kst 1.302500e-02   p_cons 8.811667e-01   p_joint 5.515833e-02

Outputting figure to mutsig2_images.part000000000061/FAM26F.2_956_120000_0.013025_0.88117_0.055158.png
                gene_name: FAM26F
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.056 

Current progress: 96 percent done.
FAM40A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.063575e-02	ci left: 9.263722e-01	ci right 9.363747e-01	k: 9315	n:10000
Cons ci ratio: 5.395232e-03	ci left: 9.786643e-01	ci right 9.840501e-01	k: 9815	n:10000
KS ci ratio: 4.633221e-02	ci left: 4.074111e-01	ci right 4.268372e-01	k: 4171	n:10000
FAM40A   10000 perm   2 sec   (6528 perm/sec)   p_kst 4.171000e-01   p_cons 9.815000e-01   p_joint 9.315000e-01

Outputting figure to mutsig2_images.part000000000061/FAM40A.2_2598_10000_0.4171_0.9815_0.9315.png
                gene_name: FAM40A
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 98 percent done.
FAM45A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.969303e-02	ci left: 1.271849e-01	ci right 1.406292e-01	k: 1338	n:10000
Cons ci ratio: 1.221246e-01	ci left: 8.766844e-02	ci right 9.916968e-02	k: 933	n:10000
KS ci ratio: 2.950589e-02	ci left: 6.287933e-01	ci right 6.477261e-01	k: 6383	n:10000
FAM45A   10000 perm   1 sec   (7406 perm/sec)   p_kst 6.383000e-01   p_cons 9.330000e-02   p_joint 1.338000e-01

Joint ci ratio: 2.689182e-02	ci left: 5.081469e-01	ci right 5.220487e-01	k: 10302	n:20000
Cons ci ratio: 8.605233e-02	ci left: 8.994073e-02	ci right 9.807774e-02	k: 1879	n:20000
KS ci ratio: 2.081960e-02	ci left: 6.326000e-01	ci right 6.459595e-01	k: 12786	n:20000
FAM45A   20000 perm   3 sec   (6544 perm/sec)   p_kst 6.393000e-01   p_cons 9.395000e-02   p_joint 5.151000e-01

Outputting figure to mutsig2_images.part000000000061/FAM45A.2_1110_20000_0.6393_0.09395_0.5151.png
                gene_name: FAM45A
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.52 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000061
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 61 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1705>
Subject: Job 9893935: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1705>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000062> was used as the working directory.
Started at Sat Oct  6 00:07:57 2012
Results reported at Sat Oct  6 00:23:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000062.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000062.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 62  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000062.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    970.61 sec.
    Max Memory :      3665 MB
    Max Swap   :      5951 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
62
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 62
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 62: processing genes 5500 - 5589
Calculating significance of each gene.
Using projection method.
5500	FAM48A	4.006434e-01
5501	FAM48B1	1
5502	FAM48B2	1
5503	FAM49A	8.817453e-02
5504	FAM49B	5.056070e-02
5505	FAM50A	1
5506	FAM50B	4.229056e-01
5507	FAM53A	7.803329e-01
5508	FAM53B	1
5509	FAM53C	9.304330e-01
5510	FAM54A	3.314495e-02
5511	FAM54B	2.931081e-01
5512	FAM55A	8.144028e-01
5513	FAM55C	5.717493e-01
5514	FAM55D	4.761760e-01
5515	FAM57A	4.395479e-01
5516	FAM57B	8.561250e-02
5517	FAM58A	6.455494e-01
5518	FAM58B	5.183541e-01
5519	FAM59A	6.943768e-01
5520	FAM5B	6.275189e-03
5521	FAM5C	2.990541e-05
5522	FAM60A	6.370643e-01
5523	FAM63A	5.381290e-01
5524	FAM63B	9.820344e-01
5525	FAM64A	8.803390e-02
5526	FAM65A	8.722800e-02
5527	FAM65B	4.301051e-01
5528	FAM65C	9.754318e-01
5529	FAM69A	4.807713e-01
In gene FAM69B the following bins exceed PROBCAP:
    COAD-AA-3678	categ 6	N = 1082    n = 1	mu =   2.96e-07
5530	FAM69B	5.244431e-01
5531	FAM69C	1.616095e-01
5532	FAM70A	5.149082e-01
5533	FAM70B	6.178165e-01
5534	FAM71A	1.643141e-01
5535	FAM71B	3.524122e-02
5536	FAM71C	9.927081e-02
5537	FAM71D	8.422994e-01
5538	FAM71E1	7.362475e-01
5539	FAM71F1	1.427663e-01
5540	FAM71F2	7.816679e-01
5541	FAM72A	1
5542	FAM72B	1
5543	FAM73A	3.884062e-01
5544	FAM73B	9.777963e-01
5545	FAM75A3	1
5546	FAM76A	4.972771e-01
5547	FAM76B	1
5548	FAM78A	8.944118e-01
5549	FAM78B	1
5550	FAM81A	8.601680e-01
5551	FAM81B	6.265965e-01
5552	FAM82A1	2.966136e-01
In gene FAM82A2 the following bins exceed PROBCAP:
    COAD-AA-3552	categ 6	N = 1461    n = 1	mu =   1.38e-07
5553	FAM82A2	3.315285e-01
5554	FAM82B	4.595650e-01
5555	FAM83A	4.120911e-01
5556	FAM83B	5.707122e-01
5557	FAM83C	1.928963e-01
5558	FAM83D	3.314035e-01
5559	FAM83E	8.904857e-01
5560	FAM83F	1
5561	FAM83G	8.570702e-01
5562	FAM83H	9.837885e-01
5563	FAM84A	4.060665e-01
5564	FAM84B	1
5565	FAM86A	4.116780e-01
5566	FAM86B1	1
5567	FAM86C	1
5568	FAM89A	1
5569	FAM89B	3.104837e-01
5570	FAM8A1	2.355503e-01
5571	FAM90A1	3.237258e-01
5572	FAM91A1	9.135213e-01
5573	FAM92A1	5.973824e-01
5574	FAM92B	2.332706e-01
5575	FAM96A	3.524685e-01
5576	FAM96B	1
5577	FAM98A	8.050961e-01
5578	FAM98B	5.695302e-01
5579	FAM98C	4.081587e-01
5580	FAM9A	7.428551e-01
5581	FAM9B	3.746260e-02
5582	FAM9C	4.657349e-01
5583	FANCA	3.464857e-01
5584	FANCB	4.389348e-01
5585	FANCC	4.711025e-01
5586	FANCD2	1.843227e-01
5587	FANCE	1
5588	FANCF	6.744952e-01
5589	FANCG	6.558359e-01
Done

Running MutSig 2:
Scatter job 62: processing genes 5500 - 5589
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FAM5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.381047e-02	ci left: 3.372686e-01	ci right 3.560208e-01	k: 3466	n:10000
Cons ci ratio: 6.700260e-03	ci left: 9.682593e-01	ci right 9.748622e-01	k: 9717	n:10000
KS ci ratio: 7.088296e-02	ci left: 2.258292e-01	ci right 2.425259e-01	k: 2341	n:10000
FAM5C   10000 perm   2 sec   (4240 perm/sec)   p_kst 2.341000e-01   p_cons 9.717000e-01   p_joint 3.466000e-01

Outputting figure to mutsig2_images.part000000000062/FAM5C.15_2329_10000_0.2341_0.9717_0.3466.png
                gene_name: FAM5C
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 2 percent done.
FAM5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.422056e-02	ci left: 2.099406e-01	ci right 2.262240e-01	k: 2180	n:10000
Cons ci ratio: 8.588454e-02	ci left: 1.649446e-01	ci right 1.798468e-01	k: 1723	n:10000
KS ci ratio: 1.063518e-01	ci left: 1.132038e-01	ci right 1.260187e-01	k: 1195	n:10000
FAM5B   10000 perm   2 sec   (4439 perm/sec)   p_kst 1.195000e-01   p_cons 1.723000e-01   p_joint 2.180000e-01

Joint ci ratio: 7.249256e-02	ci left: 1.229069e-01	ci right 1.322016e-01	k: 2550	n:20000
Cons ci ratio: 6.123536e-02	ci left: 1.648173e-01	ci right 1.752788e-01	k: 3400	n:20000
KS ci ratio: 7.736872e-02	ci left: 1.093319e-01	ci right 1.181808e-01	k: 2274	n:20000
FAM5B   20000 perm   5 sec   (4197 perm/sec)   p_kst 1.137000e-01   p_cons 1.700000e-01   p_joint 1.275000e-01

Outputting figure to mutsig2_images.part000000000062/FAM5B.14_2380_20000_0.1137_0.17_0.1275.png
                gene_name: FAM5B
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 4 percent done.
FAM65A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.898176e-01	ci left: 3.700694e-02	ci right 4.486335e-02	k: 408	n:10000
Cons ci ratio: 2.185407e-03	ci left: 9.957201e-01	ci right 9.979750e-01	k: 9970	n:10000
KS ci ratio: 2.716280e-01	ci left: 1.762636e-02	ci right 2.325787e-02	k: 203	n:10000
FAM65A   10000 perm   2 sec   (4304 perm/sec)   p_kst 2.030000e-02   p_cons 9.970000e-01   p_joint 4.080000e-02

Joint ci ratio: 1.140188e-01	ci left: 5.260997e-02	ci right 5.901994e-02	k: 1115	n:20000
Cons ci ratio: 1.582579e-03	ci left: 9.959155e-01	ci right 9.975348e-01	k: 19936	n:20000
KS ci ratio: 1.906485e-01	ci left: 1.872403e-02	ci right 2.271702e-02	k: 413	n:20000
FAM65A   20000 perm   5 sec   (3881 perm/sec)   p_kst 2.065000e-02   p_cons 9.968000e-01   p_joint 5.575000e-02

Joint ci ratio: 9.579296e-02	ci left: 5.032870e-02	ci right 5.542499e-02	k: 1585	n:30000
Cons ci ratio: 1.308741e-03	ci left: 9.959838e-01	ci right 9.973171e-01	k: 29901	n:30000
KS ci ratio: 1.582878e-01	ci left: 1.844573e-02	ci right 2.164817e-02	k: 600	n:30000
FAM65A   30000 perm   8 sec   (3806 perm/sec)   p_kst 2.000000e-02   p_cons 9.967000e-01   p_joint 5.283333e-02

Joint ci ratio: 9.042302e-02	ci left: 4.284229e-02	ci right 4.692411e-02	k: 1794	n:40000
Cons ci ratio: 1.084032e-03	ci left: 9.963866e-01	ci right 9.974893e-01	k: 39879	n:40000
KS ci ratio: 1.363314e-01	ci left: 1.886790e-02	ci right 2.165236e-02	k: 809	n:40000
FAM65A   40000 perm   11 sec   (3650 perm/sec)   p_kst 2.022500e-02   p_cons 9.969750e-01   p_joint 4.485000e-02

Joint ci ratio: 8.437720e-02	ci left: 3.963133e-02	ci right 4.314217e-02	k: 2068	n:50000
Cons ci ratio: 9.355265e-04	ci left: 9.966751e-01	ci right 9.976257e-01	k: 49859	n:50000
KS ci ratio: 1.226517e-01	ci left: 1.879080e-02	ci right 2.126537e-02	k: 1000	n:50000
FAM65A   50000 perm   14 sec   (3630 perm/sec)   p_kst 2.000000e-02   p_cons 9.971800e-01   p_joint 4.136000e-02

Joint ci ratio: 7.787696e-02	ci left: 3.893660e-02	ci right 4.210804e-02	k: 2430	n:60000
Cons ci ratio: 9.090651e-04	ci left: 9.963148e-01	ci right 9.972361e-01	k: 59808	n:60000
KS ci ratio: 1.121656e-01	ci left: 1.882988e-02	ci right 2.108355e-02	k: 1196	n:60000
FAM65A   60000 perm   17 sec   (3575 perm/sec)   p_kst 1.993333e-02   p_cons 9.968000e-01   p_joint 4.050000e-02

Joint ci ratio: 6.433081e-02	ci left: 4.874868e-02	ci right 5.200300e-02	k: 3525	n:70000
Cons ci ratio: 7.890784e-04	ci left: 9.967648e-01	ci right 9.975646e-01	k: 69803	n:70000
KS ci ratio: 1.034867e-01	ci left: 1.904529e-02	ci right 2.113762e-02	k: 1405	n:70000
FAM65A   70000 perm   20 sec   (3544 perm/sec)   p_kst 2.007143e-02   p_cons 9.971857e-01   p_joint 5.035714e-02

Joint ci ratio: 6.566205e-02	ci left: 4.124783e-02	ci right 4.406046e-02	k: 3411	n:80000
Cons ci ratio: 7.376511e-04	ci left: 9.967956e-01	ci right 9.975426e-01	k: 79775	n:80000
KS ci ratio: 9.692179e-02	ci left: 1.906546e-02	ci right 2.101957e-02	k: 1602	n:80000
FAM65A   80000 perm   23 sec   (3519 perm/sec)   p_kst 2.002500e-02   p_cons 9.971875e-01   p_joint 4.263750e-02

Outputting figure to mutsig2_images.part000000000062/FAM65A.11_3744_80000_0.020025_0.99719_0.042638.png
                gene_name: FAM65A
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.044 

Current progress: 6 percent done.
FANCD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.727395e-02	ci left: 5.152564e-01	ci right 5.349290e-01	k: 5251	n:10000
Cons ci ratio: 6.924324e-02	ci left: 2.342244e-01	ci right 2.511257e-01	k: 2426	n:10000
KS ci ratio: 2.554502e-02	ci left: 6.928268e-01	ci right 7.108555e-01	k: 7019	n:10000
FANCD2   10000 perm   2 sec   (4115 perm/sec)   p_kst 7.019000e-01   p_cons 2.426000e-01   p_joint 5.251000e-01

Outputting figure to mutsig2_images.part000000000062/FANCD2.11_4663_10000_0.7019_0.2426_0.5251.png
                gene_name: FANCD2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 8 percent done.
FAM71B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.707249e-02	ci left: 1.333527e-01	ci right 1.470577e-01	k: 1401	n:10000
Cons ci ratio: 3.478503e-02	ci left: 5.496035e-01	ci right 5.691619e-01	k: 5594	n:10000
KS ci ratio: 1.389664e-01	ci left: 6.855690e-02	ci right 7.889307e-02	k: 736	n:10000
FAM71B   10000 perm   2 sec   (5066 perm/sec)   p_kst 7.360000e-02   p_cons 5.594000e-01   p_joint 1.401000e-01

Joint ci ratio: 7.742634e-02	ci left: 1.091844e-01	ci right 1.180283e-01	k: 2271	n:20000
Cons ci ratio: 2.400740e-02	ci left: 5.644564e-01	ci right 5.782228e-01	k: 11427	n:20000
KS ci ratio: 1.009921e-01	ci left: 6.650160e-02	ci right 7.362401e-02	k: 1400	n:20000
FAM71B   20000 perm   5 sec   (4235 perm/sec)   p_kst 7.000000e-02   p_cons 5.713500e-01   p_joint 1.135500e-01

Joint ci ratio: 6.794585e-02	ci left: 9.646329e-02	ci right 1.032811e-01	k: 2995	n:30000
Cons ci ratio: 2.028386e-02	ci left: 5.488874e-01	ci right 5.601687e-01	k: 16636	n:30000
KS ci ratio: 8.281044e-02	ci left: 6.661478e-02	ci right 7.240226e-02	k: 2084	n:30000
FAM71B   30000 perm   7 sec   (4187 perm/sec)   p_kst 6.946667e-02   p_cons 5.545333e-01   p_joint 9.983333e-02

Outputting figure to mutsig2_images.part000000000062/FAM71B.10_1826_30000_0.069467_0.55453_0.099833.png
                gene_name: FAM71B
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.100 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 10 percent done.
FANCA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.504683e-02	ci left: 5.458961e-01	ci right 5.654714e-01	k: 5557	n:10000
Cons ci ratio: 6.981304e-02	ci left: 2.312609e-01	ci right 2.480910e-01	k: 2396	n:10000
KS ci ratio: 1.391093e-02	ci left: 8.818604e-01	ci right 8.943125e-01	k: 8882	n:10000
FANCA   10000 perm   2 sec   (4468 perm/sec)   p_kst 8.882000e-01   p_cons 2.396000e-01   p_joint 5.557000e-01

Outputting figure to mutsig2_images.part000000000062/FANCA.7_4545_10000_0.8882_0.2396_0.5557.png
                gene_name: FANCA
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 12 percent done.
FAM48A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.228514e-01	ci left: 8.669623e-02	ci right 9.814248e-02	k: 923	n:10000
Cons ci ratio: 1.783066e-01	ci left: 4.197692e-02	ci right 5.029006e-02	k: 460	n:10000
KS ci ratio: 6.195184e-02	ci left: 2.769584e-01	ci right 2.947665e-01	k: 2858	n:10000
FAM48A   10000 perm   2 sec   (4973 perm/sec)   p_kst 2.858000e-01   p_cons 4.600000e-02   p_joint 9.230000e-02

Joint ci ratio: 8.959483e-02	ci left: 8.342314e-02	ci right 9.129730e-02	k: 1746	n:20000
Cons ci ratio: 1.266618e-01	ci left: 4.279850e-02	ci right 4.863449e-02	k: 913	n:20000
KS ci ratio: 4.404941e-02	ci left: 2.773599e-01	ci right 2.899030e-01	k: 5672	n:20000
FAM48A   20000 perm   4 sec   (4635 perm/sec)   p_kst 2.836000e-01   p_cons 4.565000e-02   p_joint 8.730000e-02

Joint ci ratio: 7.704522e-02	ci left: 7.636479e-02	ci right 8.251695e-02	k: 2382	n:30000
Cons ci ratio: 1.035781e-01	ci left: 4.320175e-02	ci right 4.795342e-02	k: 1366	n:30000
KS ci ratio: 3.521270e-02	ci left: 2.871570e-01	ci right 2.974833e-01	k: 8769	n:30000
FAM48A   30000 perm   7 sec   (4465 perm/sec)   p_kst 2.923000e-01   p_cons 4.553333e-02   p_joint 7.940000e-02

Joint ci ratio: 6.477579e-02	ci left: 8.115163e-02	ci right 8.660896e-02	k: 3354	n:40000
Cons ci ratio: 9.305924e-02	ci left: 4.049500e-02	ci right 4.447176e-02	k: 1698	n:40000
KS ci ratio: 3.052524e-02	ci left: 2.874474e-01	ci right 2.963828e-01	k: 11676	n:40000
FAM48A   40000 perm   9 sec   (4303 perm/sec)   p_kst 2.919000e-01   p_cons 4.245000e-02   p_joint 8.385000e-02

Outputting figure to mutsig2_images.part000000000062/FAM48A.6_2443_40000_0.2919_0.04245_0.08385.png
                gene_name: FAM48A
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.087 

Current progress: 14 percent done.
FAM59A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
Cons ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
KS ci ratio: 8.606556e-02	ci left: 1.643550e-01	ci right 1.792367e-01	k: 1717	n:10000
FAM59A   10000 perm   2 sec   (4973 perm/sec)   p_kst 1.717000e-01   p_cons 1.700000e-03   p_joint 9.300000e-03

Joint ci ratio: 4.930829e-01	ci left: 2.377553e-03	ci right 3.972323e-03	k: 62	n:20000
Cons ci ratio: 5.377261e-01	ci left: 1.942395e-03	ci right 3.408173e-03	k: 52	n:20000
KS ci ratio: 6.087983e-02	ci left: 1.664471e-01	ci right 1.769485e-01	k: 3433	n:20000
FAM59A   20000 perm   5 sec   (4407 perm/sec)   p_kst 1.716500e-01   p_cons 2.600000e-03   p_joint 3.100000e-03

Joint ci ratio: 2.963065e-01	ci left: 4.941315e-03	ci right 6.689812e-03	k: 173	n:30000
Cons ci ratio: 4.376773e-01	ci left: 2.085372e-03	ci right 3.280854e-03	k: 79	n:30000
KS ci ratio: 4.972007e-02	ci left: 1.673488e-01	ci right 1.759149e-01	k: 5148	n:30000
FAM59A   30000 perm   7 sec   (4202 perm/sec)   p_kst 1.716000e-01   p_cons 2.633333e-03   p_joint 5.766667e-03

Joint ci ratio: 2.844601e-01	ci left: 4.053405e-03	ci right 5.420025e-03	k: 188	n:40000
Cons ci ratio: 3.838828e-01	ci left: 2.102270e-03	ci right 3.122080e-03	k: 103	n:40000
KS ci ratio: 4.303750e-02	ci left: 1.680653e-01	ci right 1.754824e-01	k: 6870	n:40000
FAM59A   40000 perm   10 sec   (4116 perm/sec)   p_kst 1.717500e-01   p_cons 2.575000e-03   p_joint 4.700000e-03

Joint ci ratio: 1.402662e-01	ci left: 1.430026e-02	ci right 1.647653e-02	k: 768	n:50000
Cons ci ratio: 3.407381e-01	ci left: 2.191025e-03	ci right 3.108239e-03	k: 131	n:50000
KS ci ratio: 3.858282e-02	ci left: 1.678082e-01	ci right 1.744300e-01	k: 8555	n:50000
FAM59A   50000 perm   12 sec   (4019 perm/sec)   p_kst 1.711000e-01   p_cons 2.620000e-03   p_joint 1.536000e-02

Joint ci ratio: 1.450057e-01	ci left: 1.116015e-02	ci right 1.292085e-02	k: 721	n:60000
Cons ci ratio: 3.104615e-01	ci left: 2.239157e-03	ci right 3.076771e-03	k: 158	n:60000
KS ci ratio: 3.513697e-02	ci left: 1.687728e-01	ci right 1.748256e-01	k: 10307	n:60000
FAM59A   60000 perm   15 sec   (3930 perm/sec)   p_kst 1.717833e-01   p_cons 2.633333e-03   p_joint 1.201667e-02

Joint ci ratio: 1.458480e-01	ci left: 9.468872e-03	ci right 1.097214e-02	k: 714	n:70000
Cons ci ratio: 2.839985e-01	ci left: 2.329191e-03	ci right 3.112935e-03	k: 189	n:70000
KS ci ratio: 3.261736e-02	ci left: 1.682458e-01	ci right 1.738387e-01	k: 11972	n:70000
FAM59A   70000 perm   18 sec   (3829 perm/sec)   p_kst 1.710286e-01   p_cons 2.700000e-03   p_joint 1.020000e-02

Joint ci ratio: 1.417983e-01	ci left: 8.791150e-03	ci right 1.014478e-02	k: 756	n:80000
Cons ci ratio: 2.714478e-01	ci left: 2.247366e-03	ci right 2.964464e-03	k: 207	n:80000
KS ci ratio: 3.064381e-02	ci left: 1.672040e-01	ci right 1.724199e-01	k: 13584	n:80000
FAM59A   80000 perm   21 sec   (3741 perm/sec)   p_kst 1.698000e-01   p_cons 2.587500e-03   p_joint 9.450000e-03

Joint ci ratio: 1.237716e-01	ci left: 1.033958e-02	ci right 1.171443e-02	k: 991	n:90000
Cons ci ratio: 2.570273e-01	ci left: 2.246673e-03	ci right 2.919360e-03	k: 231	n:90000
KS ci ratio: 2.892562e-02	ci left: 1.670208e-01	ci right 1.719339e-01	k: 15252	n:90000
FAM59A   90000 perm   24 sec   (3679 perm/sec)   p_kst 1.694667e-01   p_cons 2.566667e-03   p_joint 1.101111e-02

Joint ci ratio: 1.203944e-01	ci left: 9.858067e-03	ci right 1.113057e-02	k: 1048	n:100000
Cons ci ratio: 2.466242e-01	ci left: 2.209382e-03	ci right 2.840026e-03	k: 251	n:100000
KS ci ratio: 2.743617e-02	ci left: 1.671991e-01	ci right 1.718601e-01	k: 16952	n:100000
FAM59A   100000 perm   28 sec   (3588 perm/sec)   p_kst 1.695200e-01   p_cons 2.510000e-03   p_joint 1.048000e-02

Joint ci ratio: 1.183077e-01	ci left: 9.296859e-03	ci right 1.047465e-02	k: 1086	n:110000
Cons ci ratio: 2.365197e-01	ci left: 2.196426e-03	ci right 2.793924e-03	k: 273	n:110000
KS ci ratio: 2.614780e-02	ci left: 1.674317e-01	ci right 1.718767e-01	k: 18661	n:110000
FAM59A   110000 perm   31 sec   (3544 perm/sec)   p_kst 1.696455e-01   p_cons 2.481818e-03   p_joint 9.872727e-03

Joint ci ratio: 1.152921e-01	ci left: 8.991251e-03	ci right 1.009931e-02	k: 1144	n:120000
Cons ci ratio: 2.291204e-01	ci left: 2.154637e-03	ci right 2.719838e-03	k: 291	n:120000
KS ci ratio: 2.501209e-02	ci left: 1.677790e-01	ci right 1.720369e-01	k: 20388	n:120000
FAM59A   120000 perm   34 sec   (3499 perm/sec)   p_kst 1.699000e-01   p_cons 2.425000e-03   p_joint 9.533333e-03

Joint ci ratio: 1.255231e-01	ci left: 6.978543e-03	ci right 7.920551e-03	k: 967	n:130000
Cons ci ratio: 2.195528e-01	ci left: 2.177664e-03	ci right 2.721833e-03	k: 317	n:130000
KS ci ratio: 2.405124e-02	ci left: 1.676248e-01	ci right 1.717131e-01	k: 22056	n:130000
FAM59A   130000 perm   38 sec   (3450 perm/sec)   p_kst 1.696615e-01   p_cons 2.438462e-03   p_joint 7.438462e-03

Joint ci ratio: 1.238295e-01	ci left: 6.666851e-03	ci right 7.553748e-03	k: 994	n:140000
Cons ci ratio: 2.117095e-01	ci left: 2.184290e-03	ci right 2.708086e-03	k: 341	n:140000
KS ci ratio: 2.318205e-02	ci left: 1.676304e-01	ci right 1.715690e-01	k: 23743	n:140000
FAM59A   140000 perm   41 sec   (3413 perm/sec)   p_kst 1.695929e-01   p_cons 2.435714e-03   p_joint 7.100000e-03

Joint ci ratio: 1.234848e-01	ci left: 6.261075e-03	ci right 7.091500e-03	k: 1000	n:150000
Cons ci ratio: 2.054969e-01	ci left: 2.171357e-03	ci right 2.674851e-03	k: 362	n:150000
KS ci ratio: 2.239122e-02	ci left: 1.677570e-01	ci right 1.715624e-01	k: 25448	n:150000
FAM59A   150000 perm   44 sec   (3378 perm/sec)   p_kst 1.696533e-01   p_cons 2.413333e-03   p_joint 6.666667e-03

Joint ci ratio: 1.224686e-01	ci left: 5.972684e-03	ci right 6.757864e-03	k: 1017	n:160000
Cons ci ratio: 2.013841e-01	ci left: 2.124616e-03	ci right 2.606200e-03	k: 377	n:160000
KS ci ratio: 2.169109e-02	ci left: 1.676769e-01	ci right 1.713601e-01	k: 27122	n:160000
FAM59A   160000 perm   48 sec   (3334 perm/sec)   p_kst 1.695125e-01   p_cons 2.356250e-03   p_joint 6.356250e-03

Joint ci ratio: 9.157094e-02	ci left: 1.017609e-02	ci right 1.115835e-02	k: 1812	n:170000
Cons ci ratio: 1.975086e-01	ci left: 2.083463e-03	ci right 2.545536e-03	k: 392	n:170000
KS ci ratio: 2.103123e-02	ci left: 1.678949e-01	ci right 1.714693e-01	k: 28845	n:170000
FAM59A   170000 perm   52 sec   (3294 perm/sec)   p_kst 1.696765e-01   p_cons 2.305882e-03   p_joint 1.065882e-02

Joint ci ratio: 8.921784e-02	ci left: 1.013745e-02	ci right 1.108952e-02	k: 1909	n:180000
Cons ci ratio: 1.922027e-01	ci left: 2.083976e-03	ci right 2.532295e-03	k: 414	n:180000
KS ci ratio: 2.041728e-02	ci left: 1.682396e-01	ci right 1.717155e-01	k: 30595	n:180000
FAM59A   180000 perm   55 sec   (3259 perm/sec)   p_kst 1.699722e-01   p_cons 2.300000e-03   p_joint 1.060556e-02

Joint ci ratio: 8.736785e-02	ci left: 1.002593e-02	ci right 1.094700e-02	k: 1991	n:190000
Cons ci ratio: 1.858170e-01	ci left: 2.119707e-03	ci right 2.558855e-03	k: 443	n:190000
KS ci ratio: 1.985191e-02	ci left: 1.685807e-01	ci right 1.719662e-01	k: 32351	n:190000
FAM59A   190000 perm   59 sec   (3220 perm/sec)   p_kst 1.702684e-01   p_cons 2.331579e-03   p_joint 1.047895e-02

Joint ci ratio: 8.721428e-02	ci left: 9.563657e-03	ci right 1.044063e-02	k: 1999	n:200000
Cons ci ratio: 1.806031e-01	ci left: 2.137762e-03	ci right 2.566865e-03	k: 469	n:200000
KS ci ratio: 1.936561e-02	ci left: 1.683859e-01	ci right 1.716836e-01	k: 34006	n:200000
FAM59A   200000 perm   64 sec   (3134 perm/sec)   p_kst 1.700300e-01   p_cons 2.345000e-03   p_joint 9.995000e-03

Joint ci ratio: 8.863289e-02	ci left: 8.819347e-03	ci right 9.641904e-03	k: 1937	n:210000
Cons ci ratio: 1.763401e-01	ci left: 2.140596e-03	ci right 2.559044e-03	k: 492	n:210000
KS ci ratio: 1.891369e-02	ci left: 1.682058e-01	ci right 1.714223e-01	k: 35660	n:210000
FAM59A   210000 perm   68 sec   (3095 perm/sec)   p_kst 1.698095e-01   p_cons 2.342857e-03   p_joint 9.223810e-03

Joint ci ratio: 1.104255e-01	ci left: 5.380832e-03	ci right 6.014117e-03	k: 1252	n:220000
Cons ci ratio: 2.156265e-01	ci left: 1.338311e-03	ci right 1.665958e-03	k: 329	n:220000
KS ci ratio: 1.906173e-02	ci left: 1.596973e-01	ci right 1.627752e-01	k: 35471	n:220000
FAM59A   220000 perm   72 sec   (3040 perm/sec)   p_kst 1.612318e-01   p_cons 1.495455e-03   p_joint 5.690909e-03

Joint ci ratio: 1.114271e-01	ci left: 5.053836e-03	ci right 5.654385e-03	k: 1230	n:230000
Cons ci ratio: 2.090740e-01	ci left: 1.366575e-03	ci right 1.689674e-03	k: 350	n:230000
KS ci ratio: 1.862968e-02	ci left: 1.599202e-01	ci right 1.629318e-01	k: 37127	n:230000
FAM59A   230000 perm   77 sec   (2996 perm/sec)   p_kst 1.614217e-01   p_cons 1.521739e-03   p_joint 5.347826e-03

Joint ci ratio: 1.113487e-01	ci left: 4.851333e-03	ci right 5.427385e-03	k: 1232	n:240000
Cons ci ratio: 2.050257e-01	ci left: 1.364943e-03	ci right 1.680625e-03	k: 364	n:240000
KS ci ratio: 1.823723e-02	ci left: 1.599550e-01	ci right 1.629031e-01	k: 38742	n:240000
FAM59A   240000 perm   81 sec   (2971 perm/sec)   p_kst 1.614250e-01   p_cons 1.516667e-03   p_joint 5.133333e-03

Joint ci ratio: 1.139428e-01	ci left: 4.443424e-03	ci right 4.984157e-03	k: 1177	n:250000
Cons ci ratio: 2.009385e-01	ci left: 1.367297e-03	ci right 1.676445e-03	k: 379	n:250000
KS ci ratio: 1.788099e-02	ci left: 1.598004e-01	ci right 1.626875e-01	k: 40310	n:250000
FAM59A   250000 perm   85 sec   (2933 perm/sec)   p_kst 1.612400e-01   p_cons 1.516000e-03   p_joint 4.708000e-03

Joint ci ratio: 1.038517e-01	ci left: 5.166863e-03	ci right 5.736554e-03	k: 1416	n:260000
Cons ci ratio: 1.970863e-01	ci left: 1.369526e-03	ci right 1.672529e-03	k: 394	n:260000
KS ci ratio: 1.751544e-02	ci left: 1.601104e-01	ci right 1.629433e-01	k: 41996	n:260000
FAM59A   260000 perm   90 sec   (2903 perm/sec)   p_kst 1.615231e-01   p_cons 1.515385e-03   p_joint 5.446154e-03

Joint ci ratio: 1.034593e-01	ci left: 5.015162e-03	ci right 5.565910e-03	k: 1427	n:270000
Cons ci ratio: 1.838196e-01	ci left: 1.526926e-03	ci right 1.839482e-03	k: 453	n:270000
KS ci ratio: 1.718127e-02	ci left: 1.602429e-01	ci right 1.630236e-01	k: 43640	n:270000
FAM59A   270000 perm   94 sec   (2868 perm/sec)   p_kst 1.616296e-01   p_cons 1.677778e-03   p_joint 5.285185e-03

Joint ci ratio: 1.046920e-01	ci left: 4.721222e-03	ci right 5.246247e-03	k: 1394	n:280000
Cons ci ratio: 1.802802e-01	ci left: 1.533750e-03	ci right 1.840998e-03	k: 471	n:280000
KS ci ratio: 1.686797e-02	ci left: 1.603273e-01	ci right 1.630583e-01	k: 45273	n:280000
FAM59A   280000 perm   99 sec   (2838 perm/sec)   p_kst 1.616893e-01   p_cons 1.682143e-03   p_joint 4.978571e-03

Joint ci ratio: 1.026508e-01	ci left: 4.746521e-03	ci right 5.263447e-03	k: 1450	n:290000
Cons ci ratio: 1.776654e-01	ci left: 1.526974e-03	ci right 1.827952e-03	k: 485	n:290000
KS ci ratio: 1.658322e-02	ci left: 1.602104e-01	ci right 1.628929e-01	k: 46849	n:290000
FAM59A   290000 perm   103 sec   (2803 perm/sec)   p_kst 1.615483e-01   p_cons 1.672414e-03   p_joint 5.000000e-03

Joint ci ratio: 1.041484e-01	ci left: 4.455136e-03	ci right 4.947840e-03	k: 1409	n:300000
Cons ci ratio: 1.741179e-01	ci left: 1.539808e-03	ci right 1.836618e-03	k: 505	n:300000
KS ci ratio: 1.630761e-02	ci left: 1.601815e-01	ci right 1.628184e-01	k: 48449	n:300000
FAM59A   300000 perm   108 sec   (2778 perm/sec)   p_kst 1.614967e-01   p_cons 1.683333e-03   p_joint 4.696667e-03

Joint ci ratio: 1.022787e-01	ci left: 4.474836e-03	ci right 4.960300e-03	k: 1461	n:310000
Cons ci ratio: 1.715937e-01	ci left: 1.536430e-03	ci right 1.827851e-03	k: 520	n:310000
KS ci ratio: 1.603975e-02	ci left: 1.602480e-01	ci right 1.628423e-01	k: 50078	n:310000
FAM59A   310000 perm   113 sec   (2754 perm/sec)   p_kst 1.615419e-01   p_cons 1.677419e-03   p_joint 4.712903e-03

Joint ci ratio: 1.006398e-01	ci left: 4.481192e-03	ci right 4.959095e-03	k: 1509	n:320000
Cons ci ratio: 1.683912e-01	ci left: 1.548259e-03	ci right 1.835886e-03	k: 540	n:320000
KS ci ratio: 1.578795e-02	ci left: 1.602545e-01	ci right 1.628078e-01	k: 51689	n:320000
FAM59A   320000 perm   117 sec   (2731 perm/sec)   p_kst 1.615281e-01   p_cons 1.687500e-03   p_joint 4.715625e-03

Joint ci ratio: 9.985297e-02	ci left: 4.416295e-03	ci right 4.883378e-03	k: 1533	n:330000
Cons ci ratio: 1.647742e-01	ci left: 1.571039e-03	ci right 1.856008e-03	k: 564	n:330000
KS ci ratio: 1.555061e-02	ci left: 1.602097e-01	ci right 1.627235e-01	k: 53283	n:330000
FAM59A   330000 perm   123 sec   (2688 perm/sec)   p_kst 1.614636e-01   p_cons 1.709091e-03   p_joint 4.645455e-03

Joint ci ratio: 8.627446e-02	ci left: 5.774821e-03	ci right 6.298358e-03	k: 2051	n:340000
Cons ci ratio: 1.359809e-01	ci left: 2.272403e-03	ci right 2.606756e-03	k: 828	n:340000
KS ci ratio: 1.531650e-02	ci left: 1.602938e-01	ci right 1.627708e-01	k: 54920	n:340000
FAM59A   340000 perm   128 sec   (2656 perm/sec)   p_kst 1.615294e-01   p_cons 2.435294e-03   p_joint 6.032353e-03

Joint ci ratio: 7.523307e-02	ci left: 7.407457e-03	ci right 7.989310e-03	k: 2693	n:350000
Cons ci ratio: 1.340544e-01	ci left: 2.273732e-03	ci right 2.603163e-03	k: 852	n:350000
KS ci ratio: 1.508598e-02	ci left: 1.604930e-01	ci right 1.629354e-01	k: 56599	n:350000
FAM59A   350000 perm   133 sec   (2630 perm/sec)   p_kst 1.617114e-01   p_cons 2.434286e-03   p_joint 7.694286e-03

Joint ci ratio: 7.412653e-02	ci left: 7.422495e-03	ci right 7.996583e-03	k: 2774	n:360000
Cons ci ratio: 1.318313e-01	ci left: 2.288451e-03	ci right 2.614085e-03	k: 881	n:360000
KS ci ratio: 1.487104e-02	ci left: 1.605817e-01	ci right 1.629904e-01	k: 58242	n:360000
FAM59A   360000 perm   138 sec   (2602 perm/sec)   p_kst 1.617833e-01   p_cons 2.447222e-03   p_joint 7.705556e-03

Joint ci ratio: 7.337877e-02	ci left: 7.373093e-03	ci right 7.937362e-03	k: 2831	n:370000
Cons ci ratio: 1.300736e-01	ci left: 2.289341e-03	ci right 2.610423e-03	k: 905	n:370000
KS ci ratio: 1.466605e-02	ci left: 1.606470e-01	ci right 1.630231e-01	k: 59878	n:370000
FAM59A   370000 perm   143 sec   (2579 perm/sec)   p_kst 1.618324e-01   p_cons 2.445946e-03   p_joint 7.651351e-03

Joint ci ratio: 6.294649e-02	ci left: 9.784508e-03	ci right 1.042300e-02	k: 3838	n:380000
Cons ci ratio: 1.278343e-01	ci left: 2.310591e-03	ci right 2.628651e-03	k: 937	n:380000
KS ci ratio: 1.447605e-02	ci left: 1.605831e-01	ci right 1.629273e-01	k: 61466	n:380000
FAM59A   380000 perm   149 sec   (2556 perm/sec)   p_kst 1.617526e-01   p_cons 2.465789e-03   p_joint 1.010000e-02

Joint ci ratio: 6.910956e-02	ci left: 7.899184e-03	ci right 8.467134e-03	k: 3190	n:390000
Cons ci ratio: 1.260329e-01	ci left: 2.318378e-03	ci right 2.632677e-03	k: 964	n:390000
KS ci ratio: 1.428825e-02	ci left: 1.606173e-01	ci right 1.629313e-01	k: 63091	n:390000
FAM59A   390000 perm   154 sec   (2533 perm/sec)   p_kst 1.617718e-01   p_cons 2.471795e-03   p_joint 8.179487e-03

Joint ci ratio: 6.856648e-02	ci left: 7.826999e-03	ci right 8.385162e-03	k: 3241	n:400000
Cons ci ratio: 1.246841e-01	ci left: 2.311271e-03	ci right 2.621006e-03	k: 985	n:400000
KS ci ratio: 1.411083e-02	ci left: 1.605877e-01	ci right 1.628722e-01	k: 64691	n:400000
FAM59A   400000 perm   159 sec   (2512 perm/sec)   p_kst 1.617275e-01   p_cons 2.462500e-03   p_joint 8.102500e-03

Joint ci ratio: 6.760271e-02	ci left: 7.859069e-03	ci right 8.411331e-03	k: 3334	n:410000
Cons ci ratio: 1.227682e-01	ci left: 2.328170e-03	ci right 2.635026e-03	k: 1016	n:410000
KS ci ratio: 1.393296e-02	ci left: 1.606934e-01	ci right 1.629504e-01	k: 66346	n:410000
FAM59A   410000 perm   165 sec   (2491 perm/sec)   p_kst 1.618195e-01   p_cons 2.478049e-03   p_joint 8.131707e-03

Joint ci ratio: 6.686554e-02	ci left: 7.845174e-03	ci right 8.390216e-03	k: 3408	n:420000
Cons ci ratio: 1.214033e-01	ci left: 2.325826e-03	ci right 2.628721e-03	k: 1039	n:420000
KS ci ratio: 1.376805e-02	ci left: 1.606684e-01	ci right 1.628982e-01	k: 67948	n:420000
FAM59A   420000 perm   170 sec   (2471 perm/sec)   p_kst 1.617810e-01   p_cons 2.473810e-03   p_joint 8.114286e-03

Joint ci ratio: 6.684226e-02	ci left: 7.669565e-03	ci right 8.202213e-03	k: 3411	n:430000
Cons ci ratio: 1.199135e-01	ci left: 2.330378e-03	ci right 2.629877e-03	k: 1065	n:430000
KS ci ratio: 1.360186e-02	ci left: 1.607839e-01	ci right 1.629881e-01	k: 69610	n:430000
FAM59A   430000 perm   176 sec   (2441 perm/sec)   p_kst 1.618837e-01   p_cons 2.476744e-03   p_joint 7.932558e-03

Joint ci ratio: 6.599596e-02	ci left: 7.691938e-03	ci right 8.219118e-03	k: 3499	n:440000
Cons ci ratio: 1.188597e-01	ci left: 2.319306e-03	ci right 2.614579e-03	k: 1084	n:440000
KS ci ratio: 1.344853e-02	ci left: 1.607538e-01	ci right 1.629325e-01	k: 71210	n:440000
FAM59A   440000 perm   182 sec   (2412 perm/sec)   p_kst 1.618409e-01   p_cons 2.463636e-03   p_joint 7.952273e-03

Joint ci ratio: 6.737341e-02	ci left: 7.215023e-03	ci right 7.720239e-03	k: 3359	n:450000
Cons ci ratio: 1.170913e-01	ci left: 2.338937e-03	ci right 2.631972e-03	k: 1117	n:450000
KS ci ratio: 1.329777e-02	ci left: 1.607761e-01	ci right 1.629305e-01	k: 72833	n:450000
FAM59A   450000 perm   189 sec   (2385 perm/sec)   p_kst 1.618511e-01   p_cons 2.482222e-03   p_joint 7.464444e-03

Joint ci ratio: 6.743960e-02	ci left: 7.045330e-03	ci right 7.539167e-03	k: 3353	n:460000
Cons ci ratio: 1.161608e-01	ci left: 2.326078e-03	ci right 2.615028e-03	k: 1135	n:460000
KS ci ratio: 1.315628e-02	ci left: 1.607086e-01	ci right 1.628391e-01	k: 74415	n:460000
FAM59A   460000 perm   196 sec   (2351 perm/sec)   p_kst 1.617717e-01   p_cons 2.467391e-03   p_joint 7.289130e-03

Joint ci ratio: 6.297492e-02	ci left: 7.919017e-03	ci right 8.436010e-03	k: 3842	n:470000
Cons ci ratio: 1.148537e-01	ci left: 2.330308e-03	ci right 2.616305e-03	k: 1161	n:470000
KS ci ratio: 1.301034e-02	ci left: 1.608288e-01	ci right 1.629371e-01	k: 76084	n:470000
FAM59A   470000 perm   202 sec   (2331 perm/sec)   p_kst 1.618809e-01   p_cons 2.470213e-03   p_joint 8.174468e-03

Joint ci ratio: 5.878424e-02	ci left: 8.909247e-03	ci right 9.450869e-03	k: 4405	n:480000
Cons ci ratio: 1.475271e-01	ci left: 1.360383e-03	ci right 1.579039e-03	k: 704	n:480000
KS ci ratio: 1.287685e-02	ci left: 1.607820e-01	ci right 1.628679e-01	k: 77675	n:480000
FAM59A   480000 perm   208 sec   (2312 perm/sec)   p_kst 1.618229e-01   p_cons 1.466667e-03   p_joint 9.177083e-03

Joint ci ratio: 6.073970e-02	ci left: 8.172481e-03	ci right 8.686418e-03	k: 4129	n:490000
Cons ci ratio: 1.461857e-01	ci left: 1.358176e-03	ci right 1.574318e-03	k: 717	n:490000
KS ci ratio: 1.274547e-02	ci left: 1.607780e-01	ci right 1.628423e-01	k: 79286	n:490000
FAM59A   490000 perm   214 sec   (2287 perm/sec)   p_kst 1.618082e-01   p_cons 1.463265e-03   p_joint 8.426531e-03

Joint ci ratio: 6.022504e-02	ci left: 8.148881e-03	ci right 8.656841e-03	k: 4200	n:500000
Cons ci ratio: 1.447811e-01	ci left: 1.357993e-03	ci right 1.571851e-03	k: 731	n:500000
KS ci ratio: 1.261645e-02	ci left: 1.608081e-01	ci right 1.628518e-01	k: 80914	n:500000
FAM59A   500000 perm   221 sec   (2266 perm/sec)   p_kst 1.618280e-01   p_cons 1.462000e-03   p_joint 8.400000e-03

Joint ci ratio: 5.983635e-02	ci left: 8.095316e-03	ci right 8.596568e-03	k: 4255	n:510000
Cons ci ratio: 1.430327e-01	ci left: 1.365389e-03	ci right 1.577594e-03	k: 749	n:510000
KS ci ratio: 1.249606e-02	ci left: 1.607335e-01	ci right 1.627566e-01	k: 82489	n:510000
FAM59A   510000 perm   227 sec   (2247 perm/sec)   p_kst 1.617431e-01   p_cons 1.468627e-03   p_joint 8.343137e-03

Joint ci ratio: 5.934413e-02	ci left: 8.074138e-03	ci right 8.569825e-03	k: 4326	n:520000
Cons ci ratio: 1.413462e-01	ci left: 1.372516e-03	ci right 1.583101e-03	k: 767	n:520000
KS ci ratio: 1.237545e-02	ci left: 1.607405e-01	ci right 1.627440e-01	k: 84105	n:520000
FAM59A   520000 perm   233 sec   (2231 perm/sec)   p_kst 1.617404e-01   p_cons 1.475000e-03   p_joint 8.319231e-03

Joint ci ratio: 5.955035e-02	ci left: 7.867868e-03	ci right 8.352627e-03	k: 4297	n:530000
Cons ci ratio: 1.398070e-01	ci left: 1.377567e-03	ci right 1.586434e-03	k: 784	n:530000
KS ci ratio: 1.225162e-02	ci left: 1.608941e-01	ci right 1.628794e-01	k: 85799	n:530000
FAM59A   530000 perm   239 sec   (2215 perm/sec)   p_kst 1.618849e-01   p_cons 1.479245e-03   p_joint 8.107547e-03

Joint ci ratio: 5.925679e-02	ci left: 7.800605e-03	ci right 8.278770e-03	k: 4340	n:540000
Cons ci ratio: 1.387509e-01	ci left: 1.373504e-03	ci right 1.580052e-03	k: 796	n:540000
KS ci ratio: 1.213548e-02	ci left: 1.609517e-01	ci right 1.629186e-01	k: 87444	n:540000
FAM59A   540000 perm   246 sec   (2196 perm/sec)   p_kst 1.619333e-01   p_cons 1.474074e-03   p_joint 8.037037e-03

Joint ci ratio: 5.886605e-02	ci left: 7.762669e-03	ci right 8.235263e-03	k: 4398	n:550000
Cons ci ratio: 1.375482e-01	ci left: 1.373106e-03	ci right 1.577657e-03	k: 810	n:550000
KS ci ratio: 1.202098e-02	ci left: 1.610434e-01	ci right 1.629928e-01	k: 89109	n:550000
FAM59A   550000 perm   252 sec   (2181 perm/sec)   p_kst 1.620164e-01   p_cons 1.472727e-03   p_joint 7.996364e-03

Joint ci ratio: 5.863564e-02	ci left: 7.685623e-03	ci right 8.151633e-03	k: 4433	n:560000
Cons ci ratio: 1.364590e-01	ci left: 1.371005e-03	ci right 1.573494e-03	k: 823	n:560000
KS ci ratio: 1.191091e-02	ci left: 1.611035e-01	ci right 1.630357e-01	k: 90758	n:560000
FAM59A   560000 perm   259 sec   (2162 perm/sec)   p_kst 1.620679e-01   p_cons 1.469643e-03   p_joint 7.916071e-03

Joint ci ratio: 5.644838e-02	ci left: 8.152586e-03	ci right 8.627870e-03	k: 4781	n:570000
Cons ci ratio: 1.353145e-01	ci left: 1.370679e-03	ci right 1.571285e-03	k: 837	n:570000
KS ci ratio: 1.180724e-02	ci left: 1.610828e-01	ci right 1.629978e-01	k: 92362	n:570000
FAM59A   570000 perm   266 sec   (2145 perm/sec)   p_kst 1.620386e-01   p_cons 1.468421e-03   p_joint 8.387719e-03

Joint ci ratio: 5.602874e-02	ci left: 8.134414e-03	ci right 8.604999e-03	k: 4853	n:580000
Cons ci ratio: 1.345943e-01	ci left: 1.362039e-03	ci right 1.560235e-03	k: 846	n:580000
KS ci ratio: 1.170861e-02	ci left: 1.610079e-01	ci right 1.629058e-01	k: 93934	n:580000
FAM59A   580000 perm   272 sec   (2130 perm/sec)   p_kst 1.619552e-01   p_cons 1.458621e-03   p_joint 8.367241e-03

Joint ci ratio: 6.723258e-02	ci left: 5.536152e-03	ci right 5.922963e-03	k: 3379	n:590000
Cons ci ratio: 1.334956e-01	ci left: 1.361887e-03	ci right 1.558315e-03	k: 860	n:590000
KS ci ratio: 1.134368e-02	ci left: 1.673749e-01	ci right 1.692860e-01	k: 99314	n:590000
FAM59A   590000 perm   279 sec   (2113 perm/sec)   p_kst 1.683288e-01   p_cons 1.457627e-03   p_joint 5.727119e-03

Joint ci ratio: 6.340585e-02	ci left: 6.129237e-03	ci right 6.532219e-03	k: 3797	n:600000
Cons ci ratio: 1.324993e-01	ci left: 1.360135e-03	ci right 1.554730e-03	k: 873	n:600000
KS ci ratio: 1.124689e-02	ci left: 1.674289e-01	ci right 1.693243e-01	k: 101025	n:600000
FAM59A   600000 perm   286 sec   (2098 perm/sec)   p_kst 1.683750e-01   p_cons 1.455000e-03   p_joint 6.328333e-03

Joint ci ratio: 6.410929e-02	ci left: 5.896452e-03	ci right 6.288589e-03	k: 3715	n:610000
Cons ci ratio: 1.311552e-01	ci left: 1.366373e-03	ci right 1.559723e-03	k: 891	n:610000
KS ci ratio: 1.115686e-02	ci left: 1.673733e-01	ci right 1.692528e-01	k: 102670	n:610000
FAM59A   610000 perm   293 sec   (2084 perm/sec)   p_kst 1.683115e-01   p_cons 1.460656e-03   p_joint 6.090164e-03

Joint ci ratio: 6.393959e-02	ci left: 5.833083e-03	ci right 6.219941e-03	k: 3735	n:620000
Cons ci ratio: 1.305717e-01	ci left: 1.356815e-03	ci right 1.547892e-03	k: 899	n:620000
KS ci ratio: 1.106487e-02	ci left: 1.674226e-01	ci right 1.692870e-01	k: 104379	n:620000
FAM59A   620000 perm   300 sec   (2067 perm/sec)   p_kst 1.683532e-01   p_cons 1.450000e-03   p_joint 6.024194e-03

Joint ci ratio: 6.461594e-02	ci left: 5.620217e-03	ci right 5.997048e-03	k: 3658	n:630000
Cons ci ratio: 1.298527e-01	ci left: 1.350634e-03	ci right 1.539713e-03	k: 909	n:630000
KS ci ratio: 1.097524e-02	ci left: 1.674672e-01	ci right 1.693168e-01	k: 106086	n:630000
FAM59A   630000 perm   307 sec   (2052 perm/sec)   p_kst 1.683905e-01   p_cons 1.442857e-03   p_joint 5.806349e-03

Joint ci ratio: 5.783020e-02	ci left: 6.921930e-03	ci right 7.335675e-03	k: 4561	n:640000
Cons ci ratio: 1.285869e-01	ci left: 1.356746e-03	ci right 1.544688e-03	k: 927	n:640000
KS ci ratio: 1.088800e-02	ci left: 1.675042e-01	ci right 1.693395e-01	k: 107789	n:640000
FAM59A   640000 perm   314 sec   (2038 perm/sec)   p_kst 1.684203e-01   p_cons 1.448438e-03   p_joint 7.126563e-03

Joint ci ratio: 5.735422e-02	ci left: 6.930679e-03	ci right 7.341424e-03	k: 4637	n:650000
Cons ci ratio: 1.276278e-01	ci left: 1.356721e-03	ci right 1.543152e-03	k: 941	n:650000
KS ci ratio: 1.080453e-02	ci left: 1.674956e-01	ci right 1.693166e-01	k: 109463	n:650000
FAM59A   650000 perm   322 sec   (2021 perm/sec)   p_kst 1.684046e-01   p_cons 1.447692e-03   p_joint 7.133846e-03

Joint ci ratio: 5.761436e-02	ci left: 6.764424e-03	ci right 7.167195e-03	k: 4596	n:660000
Cons ci ratio: 1.268228e-01	ci left: 1.353768e-03	ci right 1.538531e-03	k: 953	n:660000
KS ci ratio: 1.071761e-02	ci left: 1.676264e-01	ci right 1.694341e-01	k: 111229	n:660000
FAM59A   660000 perm   329 sec   (2005 perm/sec)   p_kst 1.685288e-01   p_cons 1.443939e-03   p_joint 6.963636e-03

Joint ci ratio: 5.862748e-02	ci left: 6.433978e-03	ci right 6.824038e-03	k: 4440	n:670000
Cons ci ratio: 1.259024e-01	ci left: 1.353797e-03	ci right 1.537124e-03	k: 967	n:670000
KS ci ratio: 1.063956e-02	ci left: 1.675746e-01	ci right 1.693685e-01	k: 112875	n:670000
FAM59A   670000 perm   337 sec   (1988 perm/sec)   p_kst 1.684701e-01   p_cons 1.443284e-03   p_joint 6.626866e-03

Joint ci ratio: 6.053956e-02	ci left: 5.942376e-03	ci right 6.314792e-03	k: 4166	n:680000
Cons ci ratio: 1.248745e-01	ci left: 1.356680e-03	ci right 1.538786e-03	k: 983	n:680000
KS ci ratio: 1.056135e-02	ci left: 1.675729e-01	ci right 1.693535e-01	k: 114554	n:680000
FAM59A   680000 perm   345 sec   (1970 perm/sec)   p_kst 1.684618e-01   p_cons 1.445588e-03   p_joint 6.126471e-03

Joint ci ratio: 5.827108e-02	ci left: 6.326021e-03	ci right 6.707125e-03	k: 4495	n:690000
Cons ci ratio: 1.239334e-01	ci left: 1.358081e-03	ci right 1.538900e-03	k: 998	n:690000
KS ci ratio: 1.048561e-02	ci left: 1.675510e-01	ci right 1.693185e-01	k: 116219	n:690000
FAM59A   690000 perm   353 sec   (1954 perm/sec)   p_kst 1.684333e-01   p_cons 1.446377e-03   p_joint 6.514493e-03

Joint ci ratio: 5.715842e-02	ci left: 6.483464e-03	ci right 6.866350e-03	k: 4671	n:700000
Cons ci ratio: 1.231350e-01	ci left: 1.356677e-03	ci right 1.536061e-03	k: 1011	n:700000
KS ci ratio: 1.041131e-02	ci left: 1.675340e-01	ci right 1.692888e-01	k: 117887	n:700000
FAM59A   700000 perm   361 sec   (1940 perm/sec)   p_kst 1.684100e-01   p_cons 1.444286e-03   p_joint 6.672857e-03

Joint ci ratio: 5.717960e-02	ci left: 6.387974e-03	ci right 6.765364e-03	k: 4668	n:710000
Cons ci ratio: 1.225915e-01	ci left: 1.349855e-03	ci right 1.527492e-03	k: 1020	n:710000
KS ci ratio: 1.033976e-02	ci left: 1.674852e-01	ci right 1.692274e-01	k: 119532	n:710000
FAM59A   710000 perm   369 sec   (1926 perm/sec)   p_kst 1.683549e-01   p_cons 1.436620e-03   p_joint 6.574648e-03

Joint ci ratio: 5.501212e-02	ci left: 6.810084e-03	ci right 7.196677e-03	k: 5041	n:720000
Cons ci ratio: 1.216420e-01	ci left: 1.352651e-03	ci right 1.529177e-03	k: 1036	n:720000
KS ci ratio: 1.026626e-02	ci left: 1.675307e-01	ci right 1.692609e-01	k: 121244	n:720000
FAM59A   720000 perm   377 sec   (1910 perm/sec)   p_kst 1.683944e-01   p_cons 1.438889e-03   p_joint 7.001389e-03

Joint ci ratio: 5.497088e-02	ci left: 6.727595e-03	ci right 7.109210e-03	k: 5049	n:730000
Cons ci ratio: 1.210600e-01	ci left: 1.347404e-03	ci right 1.522344e-03	k: 1046	n:730000
KS ci ratio: 1.019645e-02	ci left: 1.675162e-01	ci right 1.692344e-01	k: 122913	n:730000
FAM59A   730000 perm   385 sec   (1895 perm/sec)   p_kst 1.683740e-01   p_cons 1.432877e-03   p_joint 6.916438e-03

Joint ci ratio: 5.520508e-02	ci left: 6.580693e-03	ci right 6.955616e-03	k: 5007	n:740000
Cons ci ratio: 1.201454e-01	ci left: 1.350165e-03	ci right 1.524045e-03	k: 1062	n:740000
KS ci ratio: 1.012618e-02	ci left: 1.675534e-01	ci right 1.692600e-01	k: 124620	n:740000
FAM59A   740000 perm   393 sec   (1882 perm/sec)   p_kst 1.684054e-01   p_cons 1.435135e-03   p_joint 6.766216e-03

Joint ci ratio: 5.105138e-02	ci left: 7.600823e-03	ci right 8.000326e-03	k: 5849	n:750000
Cons ci ratio: 1.194175e-01	ci left: 1.348977e-03	ci right 1.521577e-03	k: 1075	n:750000
KS ci ratio: 1.005883e-02	ci left: 1.675484e-01	ci right 1.692435e-01	k: 126296	n:750000
FAM59A   750000 perm   401 sec   (1868 perm/sec)   p_kst 1.683947e-01   p_cons 1.433333e-03   p_joint 7.798667e-03

Joint ci ratio: 5.046617e-02	ci left: 7.677496e-03	ci right 8.076269e-03	k: 5985	n:760000
Cons ci ratio: 1.186481e-01	ci left: 1.349100e-03	ci right 1.520526e-03	k: 1089	n:760000
KS ci ratio: 9.993282e-03	ci left: 1.675304e-01	ci right 1.692143e-01	k: 127962	n:760000
FAM59A   760000 perm   409 sec   (1857 perm/sec)   p_kst 1.683711e-01   p_cons 1.432895e-03   p_joint 7.875000e-03

Joint ci ratio: 5.040093e-02	ci left: 7.598297e-03	ci right 7.992432e-03	k: 6001	n:770000
Cons ci ratio: 1.180005e-01	ci left: 1.346702e-03	ci right 1.516824e-03	k: 1101	n:770000
KS ci ratio: 9.929639e-03	ci left: 1.674948e-01	ci right 1.691675e-01	k: 129614	n:770000
FAM59A   770000 perm   417 sec   (1844 perm/sec)   p_kst 1.683299e-01   p_cons 1.429870e-03   p_joint 7.793506e-03

Joint ci ratio: 5.019320e-02	ci left: 7.564177e-03	ci right 7.954877e-03	k: 6051	n:780000
Cons ci ratio: 1.175750e-01	ci left: 1.339391e-03	ci right 1.507937e-03	k: 1109	n:780000
KS ci ratio: 9.863493e-03	ci left: 1.675650e-01	ci right 1.692272e-01	k: 131348	n:780000
FAM59A   780000 perm   426 sec   (1833 perm/sec)   p_kst 1.683949e-01   p_cons 1.421795e-03   p_joint 7.757692e-03

Joint ci ratio: 5.022915e-02	ci left: 7.458418e-03	ci right 7.843940e-03	k: 6043	n:790000
Cons ci ratio: 1.169448e-01	ci left: 1.337180e-03	ci right 1.504484e-03	k: 1121	n:790000
KS ci ratio: 9.803524e-03	ci left: 1.674945e-01	ci right 1.691459e-01	k: 132972	n:790000
FAM59A   790000 perm   434 sec   (1820 perm/sec)   p_kst 1.683190e-01   p_cons 1.418987e-03   p_joint 7.649367e-03

Joint ci ratio: 4.919642e-02	ci left: 7.679997e-03	ci right 8.068579e-03	k: 6298	n:800000
Cons ci ratio: 1.161196e-01	ci left: 1.339883e-03	ci right 1.506261e-03	k: 1137	n:800000
KS ci ratio: 9.740981e-03	ci left: 1.675306e-01	ci right 1.691718e-01	k: 134680	n:800000
FAM59A   800000 perm   443 sec   (1805 perm/sec)   p_kst 1.683500e-01   p_cons 1.421250e-03   p_joint 7.872500e-03

Joint ci ratio: 5.448719e-02	ci left: 6.176338e-03	ci right 6.523503e-03	k: 5142	n:810000
Cons ci ratio: 9.591149e-02	ci left: 1.959295e-03	ci right 2.157874e-03	k: 1666	n:810000
KS ci ratio: 9.678980e-03	ci left: 1.675844e-01	ci right 1.692155e-01	k: 136403	n:810000
FAM59A   810000 perm   452 sec   (1792 perm/sec)   p_kst 1.683988e-01   p_cons 2.056790e-03   p_joint 6.348148e-03

Outputting figure to mutsig2_images.part000000000062/FAM59A.6_2652_810000_0.1684_0.0020568_0.0063481.png
                gene_name: FAM59A
               theta_stop: 0.096 
                    nperm: 810000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.0021 
      ci_cons_bounds_left: 0.0020 
     ci_cons_bounds_right: 0.0022 
                  p_joint: 0.0063 
     ci_joint_bounds_left: 0.0062 
    ci_joint_bounds_right: 0.0065 

Current progress: 16 percent done.
FAM71A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.379860e-02	ci left: 3.373679e-01	ci right 3.561214e-01	k: 3467	n:10000
Cons ci ratio: 3.519381e-03	ci left: 9.901638e-01	ci right 9.937407e-01	k: 9921	n:10000
KS ci ratio: 8.290783e-02	ci left: 1.750712e-01	ci right 1.903141e-01	k: 1826	n:10000
FAM71A   10000 perm   2 sec   (5021 perm/sec)   p_kst 1.826000e-01   p_cons 9.921000e-01   p_joint 3.467000e-01

Outputting figure to mutsig2_images.part000000000062/FAM71A.6_1789_10000_0.1826_0.9921_0.3467.png
                gene_name: FAM71A
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 18 percent done.
FAM83B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.813674e-02	ci left: 8.160871e-01	ci right 8.311239e-01	k: 8237	n:10000
Cons ci ratio: 2.923175e-02	ci left: 6.331167e-01	ci right 6.520002e-01	k: 6426	n:10000
KS ci ratio: 3.215005e-02	ci left: 5.881121e-01	ci right 6.074309e-01	k: 5978	n:10000
FAM83B   10000 perm   2 sec   (4789 perm/sec)   p_kst 5.978000e-01   p_cons 6.426000e-01   p_joint 8.237000e-01

Outputting figure to mutsig2_images.part000000000062/FAM83B.6_3052_10000_0.5978_0.6426_0.8237.png
                gene_name: FAM83B
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 20 percent done.
FAM83D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.537640e-02	ci left: 1.666153e-01	ci right 1.815750e-01	k: 1740	n:10000
Cons ci ratio: 4.650411e-02	ci left: 4.056177e-01	ci right 4.250317e-01	k: 4153	n:10000
KS ci ratio: 1.079994e-01	ci left: 1.100791e-01	ci right 1.227454e-01	k: 1163	n:10000
FAM83D   10000 perm   2 sec   (5883 perm/sec)   p_kst 1.163000e-01   p_cons 4.153000e-01   p_joint 1.740000e-01

Joint ci ratio: 5.435154e-02	ci left: 2.007595e-01	ci right 2.120260e-01	k: 4127	n:20000
Cons ci ratio: 3.305627e-02	ci left: 4.059648e-01	ci right 4.196606e-01	k: 8256	n:20000
KS ci ratio: 7.704429e-02	ci left: 1.101675e-01	ci right 1.190449e-01	k: 2291	n:20000
FAM83D   20000 perm   4 sec   (5257 perm/sec)   p_kst 1.145500e-01   p_cons 4.128000e-01   p_joint 2.063500e-01

Outputting figure to mutsig2_images.part000000000062/FAM83D.6_1864_20000_0.11455_0.4128_0.20635.png
                gene_name: FAM83D
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 22 percent done.
FAM54A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.039249e-02	ci left: 2.282979e-01	ci right 2.450558e-01	k: 2366	n:10000
Cons ci ratio: 1.261899e-01	ci left: 8.242097e-02	ci right 9.362038e-02	k: 879	n:10000
KS ci ratio: 2.532550e-02	ci left: 6.964572e-01	ci right 7.144230e-01	k: 7055	n:10000
FAM54A   10000 perm   2 sec   (6078 perm/sec)   p_kst 7.055000e-01   p_cons 8.790000e-02   p_joint 2.366000e-01

Joint ci ratio: 4.161119e-02	ci left: 3.009092e-01	ci right 3.137469e-01	k: 6146	n:20000
Cons ci ratio: 8.789646e-02	ci left: 8.646061e-02	ci right 9.445892e-02	k: 1808	n:20000
KS ci ratio: 1.812830e-02	ci left: 6.939976e-01	ci right 7.067441e-01	k: 14008	n:20000
FAM54A   20000 perm   4 sec   (5387 perm/sec)   p_kst 7.004000e-01   p_cons 9.040000e-02   p_joint 3.073000e-01

Outputting figure to mutsig2_images.part000000000062/FAM54A.5_1186_20000_0.7004_0.0904_0.3073.png
                gene_name: FAM54A
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 24 percent done.
FAM55D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.814575e-02	ci left: 6.504187e-01	ci right 6.690882e-01	k: 6598	n:10000
Cons ci ratio: 5.384612e-02	ci left: 3.369706e-01	ci right 3.557190e-01	k: 3463	n:10000
KS ci ratio: 3.288380e-02	ci left: 5.771752e-01	ci right 5.965742e-01	k: 5869	n:10000
FAM55D   10000 perm   2 sec   (5285 perm/sec)   p_kst 5.869000e-01   p_cons 3.463000e-01   p_joint 6.598000e-01

Outputting figure to mutsig2_images.part000000000062/FAM55D.5_1655_10000_0.5869_0.3463_0.6598.png
                gene_name: FAM55D
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 25 percent done.
FAM82A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.017888e-02	ci left: 2.293843e-01	ci right 2.461688e-01	k: 2377	n:10000
Cons ci ratio: 4.171224e-02	ci left: 4.590794e-01	ci right 4.787387e-01	k: 4689	n:10000
KS ci ratio: 7.956843e-02	ci left: 1.874712e-01	ci right 2.031067e-01	k: 1952	n:10000
FAM82A1   10000 perm   2 sec   (5103 perm/sec)   p_kst 1.952000e-01   p_cons 4.689000e-01   p_joint 2.377000e-01

Outputting figure to mutsig2_images.part000000000062/FAM82A1.5_2280_10000_0.1952_0.4689_0.2377.png
                gene_name: FAM82A1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 27 percent done.
FAM83C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.332572e-02	ci left: 7.297682e-01	ci right 7.470927e-01	k: 7385	n:10000
KS ci ratio: 3.968308e-02	ci left: 4.839539e-01	ci right 5.036497e-01	k: 4938	n:10000
FAM83C   10000 perm   2 sec   (4926 perm/sec)   p_kst 4.938000e-01   p_cons 7.385000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000062/FAM83C.5_2260_10000_0.4938_0.7385_1.png
                gene_name: FAM83C
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
FAM49B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.259309e-02	ci left: 5.814892e-01	ci right 6.008577e-01	k: 5912	n:10000
Cons ci ratio: 6.136535e-02	ci left: 2.808214e-01	ci right 2.987012e-01	k: 2897	n:10000
KS ci ratio: 4.577464e-02	ci left: 4.132907e-01	ci right 4.327542e-01	k: 4230	n:10000
FAM49B   10000 perm   2 sec   (5799 perm/sec)   p_kst 4.230000e-01   p_cons 2.897000e-01   p_joint 5.912000e-01

Outputting figure to mutsig2_images.part000000000062/FAM49B.4_1015_10000_0.423_0.2897_0.5912.png
                gene_name: FAM49B
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 31 percent done.
FAM57B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.492253e-02	ci left: 4.224616e-01	ci right 4.419779e-01	k: 4322	n:10000
Cons ci ratio: 1.024491e-01	ci left: 1.211198e-01	ci right 1.342979e-01	k: 1276	n:10000
KS ci ratio: 4.033941e-02	ci left: 4.757596e-01	ci right 4.954488e-01	k: 4856	n:10000
FAM57B   10000 perm   2 sec   (5908 perm/sec)   p_kst 4.856000e-01   p_cons 1.276000e-01   p_joint 4.322000e-01

Joint ci ratio: 4.613284e-02	ci left: 2.590915e-01	ci right 2.713768e-01	k: 5304	n:20000
Cons ci ratio: 7.618347e-02	ci left: 1.124288e-01	ci right 1.213829e-01	k: 2337	n:20000
KS ci ratio: 2.900171e-02	ci left: 4.704063e-01	ci right 4.843003e-01	k: 9547	n:20000
FAM57B   20000 perm   4 sec   (5358 perm/sec)   p_kst 4.773500e-01   p_cons 1.168500e-01   p_joint 2.652000e-01

Outputting figure to mutsig2_images.part000000000062/FAM57B.4_845_20000_0.47735_0.11685_0.2652.png
                gene_name: FAM57B
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 33 percent done.
FAM65B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.202335e-02	ci left: 4.553853e-01	ci right 4.750350e-01	k: 4652	n:10000
Cons ci ratio: 3.876542e-02	ci left: 4.956504e-01	ci right 5.153464e-01	k: 5055	n:10000
KS ci ratio: 6.427613e-02	ci left: 2.623061e-01	ci right 2.798274e-01	k: 2710	n:10000
FAM65B   10000 perm   2 sec   (5074 perm/sec)   p_kst 2.710000e-01   p_cons 5.055000e-01   p_joint 4.652000e-01

Outputting figure to mutsig2_images.part000000000062/FAM65B.4_3305_10000_0.271_0.5055_0.4652.png
                gene_name: FAM65B
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 35 percent done.
FAM92B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.634093e-02	ci left: 6.797224e-01	ci right 6.979674e-01	k: 6889	n:10000
KS ci ratio: 1.339460e-02	ci left: 8.893387e-01	ci right 9.014299e-01	k: 8955	n:10000
FAM92B   10000 perm   2 sec   (5254 perm/sec)   p_kst 8.955000e-01   p_cons 6.889000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000062/FAM92B.4_947_10000_0.8955_0.6889_1.png
                gene_name: FAM92B
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
FAM9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.080322e-02	ci left: 6.085946e-01	ci right 6.277365e-01	k: 6182	n:10000
Cons ci ratio: 4.858565e-02	ci left: 3.846041e-01	ci right 4.038576e-01	k: 3942	n:10000
KS ci ratio: 3.853352e-02	ci left: 4.986503e-01	ci right 5.183447e-01	k: 5085	n:10000
FAM9B   10000 perm   2 sec   (5810 perm/sec)   p_kst 5.085000e-01   p_cons 3.942000e-01   p_joint 6.182000e-01

Outputting figure to mutsig2_images.part000000000062/FAM9B.4_589_10000_0.5085_0.3942_0.6182.png
                gene_name: FAM9B
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 39 percent done.
FANCB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.967221e-02	ci left: 6.261796e-01	ci right 6.451413e-01	k: 6357	n:10000
KS ci ratio: 2.386340e-02	ci left: 7.207785e-01	ci right 7.382876e-01	k: 7296	n:10000
FANCB   10000 perm   2 sec   (5365 perm/sec)   p_kst 7.296000e-01   p_cons 6.357000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000062/FANCB.4_2612_10000_0.7296_0.6357_1.png
                gene_name: FANCB
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
FANCG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.160178e-02	ci left: 2.222750e-01	ci right 2.388823e-01	k: 2305	n:10000
Cons ci ratio: 2.376064e-02	ci left: 7.224953e-01	ci right 7.399698e-01	k: 7313	n:10000
KS ci ratio: 1.241134e-01	ci left: 8.504395e-02	ci right 9.639578e-02	k: 906	n:10000
FANCG   10000 perm   2 sec   (5296 perm/sec)   p_kst 9.060000e-02   p_cons 7.313000e-01   p_joint 2.305000e-01

Joint ci ratio: 5.912097e-02	ci left: 1.748456e-01	ci right 1.855476e-01	k: 3603	n:20000
Cons ci ratio: 1.728737e-02	ci left: 7.136703e-01	ci right 7.261657e-01	k: 14399	n:20000
KS ci ratio: 8.728774e-02	ci left: 8.758778e-02	ci right 9.563141e-02	k: 1831	n:20000
FANCG   20000 perm   4 sec   (4613 perm/sec)   p_kst 9.155000e-02   p_cons 7.199500e-01   p_joint 1.801500e-01

Outputting figure to mutsig2_images.part000000000062/FANCG.4_1925_20000_0.09155_0.71995_0.18015.png
                gene_name: FANCG
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 43 percent done.
FAM49A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.451772e-02	ci left: 5.534115e-01	ci right 5.729516e-01	k: 5632	n:10000
Cons ci ratio: 6.931866e-02	ci left: 2.338293e-01	ci right 2.507211e-01	k: 2422	n:10000
KS ci ratio: 1.796173e-02	ci left: 8.189333e-01	ci right 8.338761e-01	k: 8265	n:10000
FAM49A   10000 perm   2 sec   (6361 perm/sec)   p_kst 8.265000e-01   p_cons 2.422000e-01   p_joint 5.632000e-01

Outputting figure to mutsig2_images.part000000000062/FAM49A.3_1012_10000_0.8265_0.2422_0.5632.png
                gene_name: FAM49A
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 45 percent done.
FAM50B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.499942e-02	ci left: 2.579524e-01	ci right 2.753837e-01	k: 2666	n:10000
Cons ci ratio: 7.052912e-02	ci left: 2.276066e-01	ci right 2.443474e-01	k: 2359	n:10000
KS ci ratio: 9.393873e-02	ci left: 1.412895e-01	ci right 1.553161e-01	k: 1482	n:10000
FAM50B   10000 perm   2 sec   (6437 perm/sec)   p_kst 1.482000e-01   p_cons 2.359000e-01   p_joint 2.666000e-01

Outputting figure to mutsig2_images.part000000000062/FAM50B.3_982_10000_0.1482_0.2359_0.2666.png
                gene_name: FAM50B
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 47 percent done.
FAM55C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.268250e-02	ci left: 8.993926e-01	ci right 9.109701e-01	k: 9053	n:10000
Cons ci ratio: 2.344045e-02	ci left: 7.278487e-01	ci right 7.452133e-01	k: 7366	n:10000
KS ci ratio: 3.784578e-02	ci left: 5.076523e-01	ci right 5.273375e-01	k: 5175	n:10000
FAM55C   10000 perm   2 sec   (5540 perm/sec)   p_kst 5.175000e-01   p_cons 7.366000e-01   p_joint 9.053000e-01

Outputting figure to mutsig2_images.part000000000062/FAM55C.3_1700_10000_0.5175_0.7366_0.9053.png
                gene_name: FAM55C
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 49 percent done.
FAM63A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.478455e-03	ci left: 9.701607e-01	ci right 9.765595e-01	k: 9735	n:10000
Cons ci ratio: 2.506374e-02	ci left: 7.007944e-01	ci right 7.186833e-01	k: 7098	n:10000
KS ci ratio: 1.535590e-02	ci left: 8.601875e-01	ci right 8.735980e-01	k: 8670	n:10000
FAM63A   10000 perm   2 sec   (5326 perm/sec)   p_kst 8.670000e-01   p_cons 7.098000e-01   p_joint 9.735000e-01

Outputting figure to mutsig2_images.part000000000062/FAM63A.3_1594_10000_0.867_0.7098_0.9735.png
                gene_name: FAM63A
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 51 percent done.
FAM64A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.799302e-02	ci left: 8.184250e-01	ci right 8.333847e-01	k: 8260	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
FAM64A   10000 perm   2 sec   (4772 perm/sec)   p_kst 1   p_cons 8.260000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000062/FAM64A.3_733_10000_1_0.826_1.png
                gene_name: FAM64A
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
FAM70A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.416248e-02	ci left: 1.407013e-01	ci right 1.547046e-01	k: 1476	n:10000
Cons ci ratio: 2.309509e-01	ci left: 2.476030e-02	ci right 3.131851e-02	k: 279	n:10000
KS ci ratio: 8.605580e-03	ci left: 9.498142e-01	ci right 9.581188e-01	k: 9541	n:10000
FAM70A   10000 perm   2 sec   (5811 perm/sec)   p_kst 9.541000e-01   p_cons 2.790000e-02   p_joint 1.476000e-01

Joint ci ratio: 5.798570e-02	ci left: 1.805789e-01	ci right 1.914126e-01	k: 3719	n:20000
Cons ci ratio: 1.636116e-01	ci left: 2.561344e-02	ci right 3.022518e-02	k: 557	n:20000
KS ci ratio: 6.085839e-03	ci left: 9.510565e-01	ci right 9.569106e-01	k: 19081	n:20000
FAM70A   20000 perm   4 sec   (5359 perm/sec)   p_kst 9.540500e-01   p_cons 2.785000e-02   p_joint 1.859500e-01

Joint ci ratio: 5.730409e-02	ci left: 1.310531e-01	ci right 1.388177e-01	k: 4047	n:30000
Cons ci ratio: 1.367304e-01	ci left: 2.484066e-02	ci right 2.851844e-02	k: 799	n:30000
KS ci ratio: 4.973051e-03	ci left: 9.515343e-01	ci right 9.563106e-01	k: 28619	n:30000
FAM70A   30000 perm   6 sec   (5007 perm/sec)   p_kst 9.539667e-01   p_cons 2.663333e-02   p_joint 1.349000e-01

Joint ci ratio: 5.250637e-02	ci left: 1.190795e-01	ci right 1.255254e-01	k: 4891	n:40000
Cons ci ratio: 1.196082e-01	ci left: 2.458383e-02	ci right 2.773547e-02	k: 1045	n:40000
KS ci ratio: 4.334170e-03	ci left: 9.512887e-01	ci right 9.554451e-01	k: 38136	n:40000
FAM70A   40000 perm   8 sec   (4809 perm/sec)   p_kst 9.534000e-01   p_cons 2.612500e-02   p_joint 1.222750e-01

Joint ci ratio: 4.927316e-02	ci left: 1.095846e-01	ci right 1.151405e-01	k: 5617	n:50000
Cons ci ratio: 1.074249e-01	ci left: 2.454481e-02	ci right 2.735059e-02	k: 1296	n:50000
KS ci ratio: 3.903391e-03	ci left: 9.508844e-01	ci right 9.546229e-01	k: 47639	n:50000
FAM70A   50000 perm   11 sec   (4674 perm/sec)   p_kst 9.527800e-01   p_cons 2.592000e-02   p_joint 1.123400e-01

Joint ci ratio: 4.276523e-02	ci left: 1.202003e-01	ci right 1.254696e-01	k: 7369	n:60000
Cons ci ratio: 9.769208e-02	ci left: 2.485519e-02	ci right 2.742425e-02	k: 1567	n:60000
KS ci ratio: 3.535260e-03	ci left: 9.517678e-01	ci right 9.551548e-01	k: 57209	n:60000
FAM70A   60000 perm   13 sec   (4463 perm/sec)   p_kst 9.534833e-01   p_cons 2.611667e-02   p_joint 1.228167e-01

Outputting figure to mutsig2_images.part000000000062/FAM70A.3_1090_60000_0.95348_0.026117_0.12282.png
                gene_name: FAM70A
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 55 percent done.
FAM71C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.458655e-02	ci left: 2.604260e-01	ci right 2.779087e-01	k: 2691	n:10000
Cons ci ratio: 6.778681e-02	ci left: 2.420311e-01	ci right 2.591144e-01	k: 2505	n:10000
KS ci ratio: 4.619910e-02	ci left: 4.088062e-01	ci right 4.282413e-01	k: 4185	n:10000
FAM71C   10000 perm   2 sec   (5459 perm/sec)   p_kst 4.185000e-01   p_cons 2.505000e-01   p_joint 2.691000e-01

Outputting figure to mutsig2_images.part000000000062/FAM71C.3_734_10000_0.4185_0.2505_0.2691.png
                gene_name: FAM71C
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 57 percent done.
FAM71F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.969253e-02	ci left: 7.905018e-01	ci right 8.063240e-01	k: 7985	n:10000
KS ci ratio: 4.624658e-02	ci left: 4.083079e-01	ci right 4.277399e-01	k: 4180	n:10000
FAM71F1   10000 perm   2 sec   (5359 perm/sec)   p_kst 4.180000e-01   p_cons 7.985000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000062/FAM71F1.3_1063_10000_0.418_0.7985_1.png
                gene_name: FAM71F1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
FAM73A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.929916e-02	ci left: 2.949926e-01	ci right 3.131216e-01	k: 3040	n:10000
Cons ci ratio: 5.499528e-02	ci left: 3.275355e-01	ci right 3.461596e-01	k: 3368	n:10000
KS ci ratio: 6.614875e-02	ci left: 2.512260e-01	ci right 2.685141e-01	k: 2598	n:10000
FAM73A   10000 perm   2 sec   (5657 perm/sec)   p_kst 2.598000e-01   p_cons 3.368000e-01   p_joint 3.040000e-01

Outputting figure to mutsig2_images.part000000000062/FAM73A.3_1963_10000_0.2598_0.3368_0.304.png
                gene_name: FAM73A
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 61 percent done.
FAM81B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.374239e-02	ci left: 8.843180e-01	ci right 8.966535e-01	k: 8906	n:10000
Cons ci ratio: 2.273432e-02	ci left: 7.396724e-01	ci right 7.567828e-01	k: 7483	n:10000
KS ci ratio: 2.246886e-02	ci left: 7.441210e-01	ci right 7.611316e-01	k: 7527	n:10000
FAM81B   10000 perm   2 sec   (4064 perm/sec)   p_kst 7.527000e-01   p_cons 7.483000e-01   p_joint 8.906000e-01

Outputting figure to mutsig2_images.part000000000062/FAM81B.3_1399_10000_0.7527_0.7483_0.8906.png
                gene_name: FAM81B
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 63 percent done.
FAM83A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.332662e-02	ci left: 1.735958e-01	ci right 1.887903e-01	k: 1811	n:10000
Cons ci ratio: 1.039475e-01	ci left: 1.179914e-01	ci right 1.310282e-01	k: 1244	n:10000
KS ci ratio: 9.859073e-02	ci left: 1.297297e-01	ci right 1.432828e-01	k: 1364	n:10000
FAM83A   10000 perm   2 sec   (4895 perm/sec)   p_kst 1.364000e-01   p_cons 1.244000e-01   p_joint 1.811000e-01

Joint ci ratio: 6.309995e-02	ci left: 1.566219e-01	ci right 1.668767e-01	k: 3234	n:20000
Cons ci ratio: 7.374025e-02	ci left: 1.192162e-01	ci right 1.283935e-01	k: 2475	n:20000
KS ci ratio: 6.956788e-02	ci left: 1.322134e-01	ci right 1.417924e-01	k: 2739	n:20000
FAM83A   20000 perm   4 sec   (4648 perm/sec)   p_kst 1.369500e-01   p_cons 1.237500e-01   p_joint 1.617000e-01

Outputting figure to mutsig2_images.part000000000062/FAM83A.3_1396_20000_0.13695_0.12375_0.1617.png
                gene_name: FAM83A
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 65 percent done.
FAM8A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.253329e-01	ci left: 8.348941e-02	ci right 9.475129e-02	k: 890	n:10000
Cons ci ratio: 1.888568e-01	ci left: 3.738868e-02	ci right 4.528136e-02	k: 412	n:10000
KS ci ratio: 1.251787e-01	ci left: 8.368370e-02	ci right 9.495688e-02	k: 892	n:10000
FAM8A1   10000 perm   2 sec   (5699 perm/sec)   p_kst 8.920000e-02   p_cons 4.120000e-02   p_joint 8.900000e-02

Joint ci ratio: 9.633930e-02	ci left: 7.275530e-02	ci right 8.016840e-02	k: 1528	n:20000
Cons ci ratio: 1.294313e-01	ci left: 4.100525e-02	ci right 4.672831e-02	k: 876	n:20000
KS ci ratio: 8.582577e-02	ci left: 9.038200e-02	ci right 9.853634e-02	k: 1888	n:20000
FAM8A1   20000 perm   4 sec   (5158 perm/sec)   p_kst 9.440000e-02   p_cons 4.380000e-02   p_joint 7.640000e-02

Joint ci ratio: 6.693283e-02	ci left: 9.915546e-02	ci right 1.060550e-01	k: 3077	n:30000
Cons ci ratio: 1.058706e-01	ci left: 4.138187e-02	ci right 4.604035e-02	k: 1310	n:30000
KS ci ratio: 7.013843e-02	ci left: 9.098291e-02	ci right 9.762923e-02	k: 2828	n:30000
FAM8A1   30000 perm   6 sec   (4878 perm/sec)   p_kst 9.426667e-02   p_cons 4.366667e-02   p_joint 1.025667e-01

Joint ci ratio: 8.880349e-02	ci left: 4.438357e-02	ci right 4.853259e-02	k: 1857	n:40000
Cons ci ratio: 9.146829e-02	ci left: 4.188851e-02	ci right 4.592804e-02	k: 1755	n:40000
KS ci ratio: 6.010185e-02	ci left: 9.322861e-02	ci right 9.903018e-02	k: 3844	n:40000
FAM8A1   40000 perm   8 sec   (4735 perm/sec)   p_kst 9.610000e-02   p_cons 4.387500e-02   p_joint 4.642500e-02

Outputting figure to mutsig2_images.part000000000062/FAM8A1.3_1262_40000_0.0961_0.043875_0.046425.png
                gene_name: FAM8A1
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.049 

Current progress: 67 percent done.
FAM90A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.437784e-02	ci left: 7.121969e-01	ci right 7.298742e-01	k: 7211	n:10000
Cons ci ratio: 4.629413e-02	ci left: 4.078097e-01	ci right 4.272384e-01	k: 4175	n:10000
KS ci ratio: 2.246886e-02	ci left: 7.441210e-01	ci right 7.611316e-01	k: 7527	n:10000
FAM90A1   10000 perm   2 sec   (5898 perm/sec)   p_kst 7.527000e-01   p_cons 4.175000e-01   p_joint 7.211000e-01

Outputting figure to mutsig2_images.part000000000062/FAM90A1.3_1411_10000_0.7527_0.4175_0.7211.png
                gene_name: FAM90A1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 69 percent done.
FAM91A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.770315e-03	ci left: 9.829604e-01	ci right 9.877507e-01	k: 9855	n:10000
Cons ci ratio: 5.804816e-02	ci left: 3.040161e-01	ci right 3.222929e-01	k: 3131	n:10000
KS ci ratio: 1.073529e-02	ci left: 9.251327e-01	ci right 9.352150e-01	k: 9303	n:10000
FAM91A1   10000 perm   2 sec   (5364 perm/sec)   p_kst 9.303000e-01   p_cons 3.131000e-01   p_joint 9.855000e-01

Outputting figure to mutsig2_images.part000000000062/FAM91A1.3_2613_10000_0.9303_0.3131_0.9855.png
                gene_name: FAM91A1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 71 percent done.
FANCC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.896174e-02	ci left: 8.025773e-01	ci right 8.180415e-01	k: 8104	n:10000
KS ci ratio: 4.770315e-03	ci left: 9.829604e-01	ci right 9.877507e-01	k: 9855	n:10000
FANCC   10000 perm   2 sec   (6044 perm/sec)   p_kst 9.855000e-01   p_cons 8.104000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000062/FANCC.3_1733_10000_0.9855_0.8104_1.png
                gene_name: FANCC
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
FAM53C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.370417e-02	ci left: 5.651401e-01	ci right 5.846162e-01	k: 5749	n:10000
Cons ci ratio: 5.420475e-02	ci left: 3.339906e-01	ci right 3.527007e-01	k: 3433	n:10000
KS ci ratio: 1.332298e-02	ci left: 8.903638e-01	ci right 9.024042e-01	k: 8965	n:10000
FAM53C   10000 perm   2 sec   (5769 perm/sec)   p_kst 8.965000e-01   p_cons 3.433000e-01   p_joint 5.749000e-01

Outputting figure to mutsig2_images.part000000000062/FAM53C.2_1195_10000_0.8965_0.3433_0.5749.png
                gene_name: FAM53C
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 75 percent done.
FAM54B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.845427e-02	ci left: 8.109049e-01	ci right 8.261091e-01	k: 8186	n:10000
KS ci ratio: 5.106395e-02	ci left: 3.612223e-01	ci right 3.802530e-01	k: 3707	n:10000
FAM54B   10000 perm   1 sec   (6677 perm/sec)   p_kst 3.707000e-01   p_cons 8.186000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000062/FAM54B.2_903_10000_0.3707_0.8186_1.png
                gene_name: FAM54B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
FAM69B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.078481e-02	ci left: 9.245130e-01	ci right 9.346350e-01	k: 9297	n:10000
Cons ci ratio: 5.468901e-02	ci left: 3.300180e-01	ci right 3.486756e-01	k: 3393	n:10000
KS ci ratio: 3.810422e-02	ci left: 5.042512e-01	ci right 5.239406e-01	k: 5141	n:10000
FAM69B   10000 perm   2 sec   (5334 perm/sec)   p_kst 5.141000e-01   p_cons 3.393000e-01   p_joint 9.297000e-01

Outputting figure to mutsig2_images.part000000000062/FAM69B.2_1316_10000_0.5141_0.3393_0.9297.png
                gene_name: FAM69B
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 78 percent done.
FAM69C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.272974e-02	ci left: 2.168465e-01	ci right 2.333139e-01	k: 2250	n:10000
Cons ci ratio: 7.632823e-02	ci left: 2.006723e-01	ci right 2.166978e-01	k: 2086	n:10000
KS ci ratio: 5.688161e-02	ci left: 3.127459e-01	ci right 3.311579e-01	k: 3219	n:10000
FAM69C   10000 perm   2 sec   (6221 perm/sec)   p_kst 3.219000e-01   p_cons 2.086000e-01   p_joint 2.250000e-01

Outputting figure to mutsig2_images.part000000000062/FAM69C.2_1276_10000_0.3219_0.2086_0.225.png
                gene_name: FAM69C
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 80 percent done.
FAM70B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.597573e-02	ci left: 8.505966e-01	ci right 8.643944e-01	k: 8576	n:10000
Cons ci ratio: 3.814999e-02	ci left: 5.036510e-01	ci right 5.233411e-01	k: 5135	n:10000
KS ci ratio: 2.207059e-02	ci left: 7.507962e-01	ci right 7.676526e-01	k: 7593	n:10000
FAM70B   10000 perm   2 sec   (6507 perm/sec)   p_kst 7.593000e-01   p_cons 5.135000e-01   p_joint 8.576000e-01

Outputting figure to mutsig2_images.part000000000062/FAM70B.2_1017_10000_0.7593_0.5135_0.8576.png
                gene_name: FAM70B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 82 percent done.
FAM71F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.098259e-02	ci left: 4.678676e-01	ci right 4.875454e-01	k: 4777	n:10000
Cons ci ratio: 4.927397e-02	ci left: 3.779354e-01	ci right 3.971302e-01	k: 3875	n:10000
KS ci ratio: 3.648198e-02	ci left: 5.259661e-01	ci right 5.456130e-01	k: 5358	n:10000
FAM71F2   10000 perm   1 sec   (6680 perm/sec)   p_kst 5.358000e-01   p_cons 3.875000e-01   p_joint 4.777000e-01

Outputting figure to mutsig2_images.part000000000062/FAM71F2.2_950_10000_0.5358_0.3875_0.4777.png
                gene_name: FAM71F2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 84 percent done.
FAM82A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.194382e-02	ci left: 7.529207e-01	ci right 7.697268e-01	k: 7614	n:10000
Cons ci ratio: 7.357380e-02	ci left: 2.128999e-01	ci right 2.292629e-01	k: 2210	n:10000
KS ci ratio: 2.887637e-02	ci left: 6.387484e-01	ci right 6.575652e-01	k: 6482	n:10000
FAM82A2   10000 perm   2 sec   (5817 perm/sec)   p_kst 6.482000e-01   p_cons 2.210000e-01   p_joint 7.614000e-01

Outputting figure to mutsig2_images.part000000000062/FAM82A2.2_1461_10000_0.6482_0.221_0.7614.png
                gene_name: FAM82A2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 86 percent done.
FAM82B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.934000e-02	ci left: 6.314074e-01	ci right 6.503105e-01	k: 6409	n:10000
Cons ci ratio: 4.901550e-02	ci left: 3.804235e-01	ci right 3.996406e-01	k: 3900	n:10000
KS ci ratio: 1.763529e-02	ci left: 8.242208e-01	ci right 8.389855e-01	k: 8317	n:10000
FAM82B   10000 perm   2 sec   (5531 perm/sec)   p_kst 8.317000e-01   p_cons 3.900000e-01   p_joint 6.409000e-01

Outputting figure to mutsig2_images.part000000000062/FAM82B.2_985_10000_0.8317_0.39_0.6409.png
                gene_name: FAM82B
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 88 percent done.
FAM83G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.566102e-02	ci left: 6.909110e-01	ci right 7.089724e-01	k: 7000	n:10000
KS ci ratio: 1.460845e-02	ci left: 8.715273e-01	ci right 8.844516e-01	k: 8781	n:10000
FAM83G   10000 perm   2 sec   (5308 perm/sec)   p_kst 8.781000e-01   p_cons 7.000000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000062/FAM83G.2_2492_10000_0.8781_0.7_1.png
                gene_name: FAM83G
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
FAM84A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.176266e-02	ci left: 7.559561e-01	ci right 7.726896e-01	k: 7644	n:10000
Cons ci ratio: 2.750059e-03	ci left: 9.936409e-01	ci right 9.964588e-01	k: 9952	n:10000
KS ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
FAM84A   10000 perm   1 sec   (6746 perm/sec)   p_kst 5.170000e-02   p_cons 9.952000e-01   p_joint 7.644000e-01

Joint ci ratio: 6.908657e-02	ci left: 1.338391e-01	ci right 1.434662e-01	k: 2772	n:20000
Cons ci ratio: 1.924785e-03	ci left: 9.941964e-01	ci right 9.961553e-01	k: 19905	n:20000
KS ci ratio: 1.187105e-01	ci left: 4.862308e-02	ci right 5.480807e-02	k: 1033	n:20000
FAM84A   20000 perm   3 sec   (5910 perm/sec)   p_kst 5.165000e-02   p_cons 9.952500e-01   p_joint 1.386000e-01

Joint ci ratio: 3.265852e-02	ci left: 3.191030e-01	ci right 3.297310e-01	k: 9732	n:30000
Cons ci ratio: 1.641413e-03	ci left: 9.939196e-01	ci right 9.955823e-01	k: 29844	n:30000
KS ci ratio: 9.725848e-02	ci left: 4.886307e-02	ci right 5.389093e-02	k: 1540	n:30000
FAM84A   30000 perm   5 sec   (5610 perm/sec)   p_kst 5.133333e-02   p_cons 9.948000e-01   p_joint 3.244000e-01

Outputting figure to mutsig2_images.part000000000062/FAM84A.2_883_30000_0.051333_0.9948_0.3244.png
                gene_name: FAM84A
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 92 percent done.
FAM86A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.910833e-02	ci left: 3.795277e-01	ci right 3.987369e-01	k: 3891	n:10000
Cons ci ratio: 8.005264e-02	ci left: 1.856005e-01	ci right 2.011785e-01	k: 1933	n:10000
KS ci ratio: 3.222363e-02	ci left: 5.870082e-01	ci right 6.063355e-01	k: 5967	n:10000
FAM86A   10000 perm   2 sec   (6240 perm/sec)   p_kst 5.967000e-01   p_cons 1.933000e-01   p_joint 3.891000e-01

Outputting figure to mutsig2_images.part000000000062/FAM86A.2_1025_10000_0.5967_0.1933_0.3891.png
                gene_name: FAM86A
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 94 percent done.
FAM98B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.022950e-02	ci left: 7.815789e-01	ci right 7.976520e-01	k: 7897	n:10000
Cons ci ratio: 2.919994e-02	ci left: 6.336195e-01	ci right 6.524971e-01	k: 6431	n:10000
KS ci ratio: 3.586320e-02	ci left: 5.344770e-01	ci right 5.540972e-01	k: 5443	n:10000
FAM98B   10000 perm   2 sec   (6292 perm/sec)   p_kst 5.443000e-01   p_cons 6.431000e-01   p_joint 7.897000e-01

Outputting figure to mutsig2_images.part000000000062/FAM98B.2_1430_10000_0.5443_0.6431_0.7897.png
                gene_name: FAM98B
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 96 percent done.
FAM98C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.549380e-02	ci left: 1.372712e-01	ci right 1.511368e-01	k: 1441	n:10000
Cons ci ratio: 1.083685e-01	ci left: 1.093957e-01	ci right 1.220291e-01	k: 1156	n:10000
KS ci ratio: 6.236399e-02	ci left: 2.742845e-01	ci right 2.920420e-01	k: 2831	n:10000
FAM98C   10000 perm   2 sec   (6390 perm/sec)   p_kst 2.831000e-01   p_cons 1.156000e-01   p_joint 1.441000e-01

Joint ci ratio: 6.329847e-02	ci left: 1.557829e-01	ci right 1.660159e-01	k: 3217	n:20000
Cons ci ratio: 7.578032e-02	ci left: 1.135105e-01	ci right 1.225008e-01	k: 2359	n:20000
KS ci ratio: 4.464763e-02	ci left: 2.719475e-01	ci right 2.844170e-01	k: 5563	n:20000
FAM98C   20000 perm   4 sec   (5513 perm/sec)   p_kst 2.781500e-01   p_cons 1.179500e-01   p_joint 1.608500e-01

Outputting figure to mutsig2_images.part000000000062/FAM98C.2_1082_20000_0.27815_0.11795_0.16085.png
                gene_name: FAM98C
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 98 percent done.
FANCF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.232190e-01	ci left: 8.621021e-02	ci right 9.762881e-02	k: 918	n:10000
Cons ci ratio: 2.095758e-01	ci left: 3.024949e-02	ci right 3.742541e-02	k: 337	n:10000
KS ci ratio: 1.307777e-02	ci left: 8.938505e-01	ci right 9.057154e-01	k: 8999	n:10000
FANCF   10000 perm   1 sec   (6756 perm/sec)   p_kst 8.999000e-01   p_cons 3.370000e-02   p_joint 9.180000e-02

Joint ci ratio: 9.640759e-02	ci left: 7.265752e-02	ci right 8.006620e-02	k: 1526	n:20000
Cons ci ratio: 1.444767e-01	ci left: 3.292999e-02	ci right 3.810619e-02	k: 709	n:20000
KS ci ratio: 9.073194e-03	ci left: 8.990692e-01	ci right 9.073131e-01	k: 18065	n:20000
FANCF   20000 perm   3 sec   (5936 perm/sec)   p_kst 9.032500e-01   p_cons 3.545000e-02   p_joint 7.630000e-02

Joint ci ratio: 7.497950e-02	ci left: 8.036063e-02	ci right 8.665364e-02	k: 2504	n:30000
Cons ci ratio: 1.199654e-01	ci left: 3.230143e-02	ci right 3.645605e-02	k: 1030	n:30000
KS ci ratio: 7.330626e-03	ci left: 9.016937e-01	ci right 9.083609e-01	k: 27152	n:30000
FANCF   30000 perm   5 sec   (5624 perm/sec)   p_kst 9.050667e-01   p_cons 3.433333e-02   p_joint 8.346667e-02

Joint ci ratio: 5.156789e-02	ci left: 1.229604e-01	ci right 1.294939e-01	k: 5048	n:40000
Cons ci ratio: 1.030681e-01	ci left: 3.309843e-02	ci right 3.671950e-02	k: 1395	n:40000
KS ci ratio: 6.340641e-03	ci left: 9.023633e-01	ci right 9.081277e-01	k: 36211	n:40000
FANCF   40000 perm   8 sec   (5297 perm/sec)   p_kst 9.052750e-01   p_cons 3.487500e-02   p_joint 1.262000e-01

Joint ci ratio: 4.842272e-02	ci left: 1.130670e-01	ci right 1.186977e-01	k: 5793	n:50000
Cons ci ratio: 9.285082e-02	ci left: 3.281958e-02	ci right 3.603477e-02	k: 1720	n:50000
KS ci ratio: 5.675612e-03	ci left: 9.025380e-01	ci right 9.076948e-01	k: 45257	n:50000
FANCF   50000 perm   10 sec   (5073 perm/sec)   p_kst 9.051400e-01   p_cons 3.440000e-02   p_joint 1.158600e-01

Outputting figure to mutsig2_images.part000000000062/FANCF.2_1129_50000_0.90514_0.0344_0.11586.png
                gene_name: FANCF
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000062
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 62 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1650>
Subject: Job 9893937: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1650>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000063> was used as the working directory.
Started at Sat Oct  6 00:07:57 2012
Results reported at Sat Oct  6 03:45:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000063.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000063.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 63  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000063.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  13167.50 sec.
    Max Memory :      3457 MB
    Max Swap   :      5949 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
63
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 63
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 63: processing genes 5590 - 5679
Calculating significance of each gene.
Using projection method.
5590	FANCI	9.493242e-01
5591	FANCL	1
5592	FANCM	2.275722e-01
5593	FANK1	1.843504e-01
5594	FAP	6.389078e-01
5595	FAR1	7.996821e-01
5596	FAR2	1.600956e-01
5597	FARP1	3.404257e-01
5598	FARP2	7.097824e-01
5599	FARS2	4.370866e-02
5600	FARSA	9.538894e-01
5601	FARSB	1.645265e-01
5602	FAS	2.272694e-01
5603	FASLG	4.586715e-01
5604	FASN	9.999983e-01
5605	FASTK	1
5606	FASTKD1	4.684262e-01
5607	FASTKD2	8.118245e-01
5608	FASTKD3	4.521810e-02
5609	FASTKD5	8.555766e-01
In gene FAT1 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 13871   n = 1	mu =   8.55e-07
5610	FAT1	9.711569e-01
In gene FAT2 the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 13142   n = 1	mu =   7.59e-07
5611	FAT2	1.468510e-03
5612	FAT3	5.837360e-01
5613	FAT4	3.968401e-08
5614	FATE1	5.199740e-01
5615	FAU	4.293388e-01
5616	FBF1	9.858430e-01
5617	FBL	2.577943e-01
5618	FBLIM1	6.355709e-01
5619	FBLN1	3.449499e-01
5620	FBLN2	9.515002e-01
5621	FBLN5	9.134989e-01
5622	FBLN7	6.963685e-01
5623	FBN1	1.981595e-01
5624	FBN2	4.306381e-02
In gene FBN3 the following bins exceed PROBCAP:
    COAD-AA-3560	categ 6	N = 7908    n = 1	mu =   2.76e-07
5625	FBN3	9.752796e-01
5626	FBP1	1
5627	FBP2	3.456524e-01
5628	FBRS	1
5629	FBXL12	5.068008e-01
5630	FBXL13	1.582915e-01
5631	FBXL14	6.254305e-01
5632	FBXL15	1
5633	FBXL16	1
5634	FBXL17	9.640361e-02
5635	FBXL18	8.857508e-01
In gene FBXL19 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 1445    n = 1	mu =   8.55e-07
5636	FBXL19	5.748047e-01
5637	FBXL2	2.150462e-01
5638	FBXL20	1.677321e-01
5639	FBXL21	2.560133e-01
5640	FBXL22	1
5641	FBXL3	4.699750e-01
5642	FBXL4	7.066233e-01
5643	FBXL5	7.539537e-01
5644	FBXL6	1
5645	FBXL7	4.518295e-02
5646	FBXL8	1
5647	FBXO10	9.754476e-02
5648	FBXO11	2.539829e-01
5649	FBXO15	2.122163e-02
5650	FBXO16	4.280383e-01
5651	FBXO17	1
5652	FBXO18	6.639659e-02
5653	FBXO2	1
5654	FBXO21	3.715994e-01
5655	FBXO22	3.593352e-01
5656	FBXO24	2.175593e-01
5657	FBXO25	8.129897e-01
5658	FBXO27	1.290842e-01
5659	FBXO28	1
5660	FBXO3	3.679916e-01
5661	FBXO30	2.690701e-01
5662	FBXO31	3.464804e-01
5663	FBXO32	1.406654e-01
5664	FBXO33	1
5665	FBXO34	6.307420e-01
5666	FBXO36	3.679646e-01
5667	FBXO38	5.616157e-01
5668	FBXO39	2.025814e-02
5669	FBXO4	1.626778e-02
5670	FBXO40	8.511056e-02
5671	FBXO41	1
5672	FBXO42	2.761078e-01
5673	FBXO43	8.263114e-01
5674	FBXO44	7.762514e-01
5675	FBXO45	4.418318e-01
5676	FBXO46	9.595314e-01
5677	FBXO47	3.765716e-01
5678	FBXO48	4.046514e-01
5679	FBXO5	2.729570e-01
Done

Running MutSig 2:
Scatter job 63: processing genes 5590 - 5679
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FAT4
Processing conservation and coverage...
66% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 4.878967e-02	ci left: 3.826132e-01	ci right 4.018496e-01	k: 3922	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
FAT4   10000 perm   6 sec   (1700 perm/sec)   p_kst 1.000000e-04   p_cons 3.922000e-01   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 3.454995e-02	ci left: 3.847766e-01	ci right 3.983549e-01	k: 7831	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
FAT4   20000 perm   16 sec   (1221 perm/sec)   p_kst 5.000000e-05   p_cons 3.915500e-01   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.795887e-02	ci left: 3.902932e-01	ci right 4.013937e-01	k: 11875	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
FAT4   30000 perm   22 sec   (1349 perm/sec)   p_kst 3.333333e-05   p_cons 3.958333e-01   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.422150e-02	ci left: 3.908782e-01	ci right 4.004870e-01	k: 15827	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
FAT4   40000 perm   28 sec   (1433 perm/sec)   p_kst 2.500000e-05   p_cons 3.956750e-01   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.164986e-02	ci left: 3.917094e-01	ci right 4.003027e-01	k: 19800	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
FAT4   50000 perm   34 sec   (1467 perm/sec)   p_kst 2.000000e-05   p_cons 3.960000e-01   p_joint 0

Joint ci ratio: 5.382111e-01	ci left: 6.473338e-04	ci right 1.136365e-03	k: 52	n:60000
Cons ci ratio: 1.970731e-02	ci left: 3.934478e-01	ci right 4.012955e-01	k: 23842	n:60000
KS ci ratio: 2.263138e+00	ci left: 4.036847e-06	ci right 1.204062e-04	k: 2	n:60000
FAT4   60000 perm   40 sec   (1489 perm/sec)   p_kst 3.333333e-05   p_cons 3.973667e-01   p_joint 8.666667e-04

Joint ci ratio: 4.976164e-01	ci left: 6.666373e-04	ci right 1.119248e-03	k: 61	n:70000
Cons ci ratio: 1.828293e-02	ci left: 3.927593e-01	ci right 4.000207e-01	k: 27747	n:70000
KS ci ratio: 1.753002e+00	ci left: 1.556972e-05	ci right 1.463019e-04	k: 4	n:70000
FAT4   70000 perm   46 sec   (1517 perm/sec)   p_kst 5.714286e-05   p_cons 3.963857e-01   p_joint 8.714286e-04

Joint ci ratio: 4.787007e-01	ci left: 6.381106e-04	ci right 1.049484e-03	k: 66	n:80000
Cons ci ratio: 1.710434e-02	ci left: 3.929331e-01	ci right 3.997244e-01	k: 31706	n:80000
KS ci ratio: 1.600263e+00	ci left: 2.029388e-05	ci right 1.458481e-04	k: 5	n:80000
FAT4   80000 perm   52 sec   (1529 perm/sec)   p_kst 6.250000e-05   p_cons 3.963250e-01   p_joint 8.250000e-04

Joint ci ratio: 4.650323e-01	ci left: 6.063646e-04	ci right 9.825747e-04	k: 70	n:90000
Cons ci ratio: 1.614801e-02	ci left: 3.924809e-01	ci right 3.988814e-01	k: 35611	n:90000
KS ci ratio: 1.481555e+00	ci left: 2.446587e-05	ci right 1.450996e-04	k: 6	n:90000
FAT4   90000 perm   58 sec   (1539 perm/sec)   p_kst 6.666667e-05   p_cons 3.956778e-01   p_joint 7.777778e-04

Joint ci ratio: 4.823570e-01	ci left: 5.016910e-04	ci right 8.284044e-04	k: 65	n:100000
Cons ci ratio: 1.533501e-02	ci left: 3.921580e-01	ci right 3.982281e-01	k: 39519	n:100000
KS ci ratio: 1.385867e+00	ci left: 2.814408e-05	ci right 1.442214e-04	k: 7	n:100000
FAT4   100000 perm   65 sec   (1546 perm/sec)   p_kst 7.000000e-05   p_cons 3.951900e-01   p_joint 6.500000e-04

Joint ci ratio: 4.618231e-01	ci left: 5.041387e-04	ci right 8.140844e-04	k: 71	n:110000
Cons ci ratio: 1.461219e-02	ci left: 3.925997e-01	ci right 3.983877e-01	k: 43504	n:110000
KS ci ratio: 1.087143e+00	ci left: 5.637009e-05	ci right 1.905521e-04	k: 12	n:110000
FAT4   110000 perm   71 sec   (1554 perm/sec)   p_kst 1.090909e-04   p_cons 3.954909e-01   p_joint 6.454545e-04

Joint ci ratio: 4.650788e-01	ci left: 4.547643e-04	ci right 7.369499e-04	k: 70	n:120000
Cons ci ratio: 1.398596e-02	ci left: 3.928651e-01	ci right 3.984066e-01	k: 47476	n:120000
KS ci ratio: 1.087149e+00	ci left: 5.167249e-05	ci right 1.746734e-04	k: 12	n:120000
FAT4   120000 perm   77 sec   (1557 perm/sec)   p_kst 1.000000e-04   p_cons 3.956333e-01   p_joint 5.833333e-04

Joint ci ratio: 4.408987e-01	ci left: 4.743031e-04	ci right 7.487714e-04	k: 78	n:130000
Cons ci ratio: 1.344234e-02	ci left: 3.927945e-01	ci right 3.981179e-01	k: 51409	n:130000
KS ci ratio: 1.087154e+00	ci left: 4.769761e-05	ci right 1.612374e-04	k: 12	n:130000
FAT4   130000 perm   84 sec   (1556 perm/sec)   p_kst 9.230769e-05   p_cons 3.954538e-01   p_joint 6.000000e-04

Joint ci ratio: 4.409084e-01	ci left: 4.404224e-04	ci right 6.952914e-04	k: 78	n:140000
Cons ci ratio: 1.294709e-02	ci left: 3.931228e-01	ci right 3.982529e-01	k: 55396	n:140000
KS ci ratio: 1.012082e+00	ci left: 5.467197e-05	ci right 1.677773e-04	k: 14	n:140000
FAT4   140000 perm   90 sec   (1557 perm/sec)   p_kst 1.000000e-04   p_cons 3.956857e-01   p_joint 5.571429e-04

Joint ci ratio: 4.354365e-01	ci left: 4.229221e-04	ci right 6.637362e-04	k: 80	n:150000
Cons ci ratio: 1.251156e-02	ci left: 3.930776e-01	ci right 3.980331e-01	k: 59333	n:150000
KS ci ratio: 9.506826e-01	ci left: 6.097041e-05	ci right 1.732142e-04	k: 16	n:150000
FAT4   150000 perm   97 sec   (1554 perm/sec)   p_kst 1.066667e-04   p_cons 3.955533e-01   p_joint 5.333333e-04

Joint ci ratio: 4.250694e-01	ci left: 4.187815e-04	ci right 6.499451e-04	k: 84	n:160000
Cons ci ratio: 1.211499e-02	ci left: 3.931279e-01	ci right 3.979259e-01	k: 63284	n:160000
KS ci ratio: 9.238980e-01	ci left: 6.189572e-05	ci right 1.701111e-04	k: 17	n:160000
FAT4   160000 perm   103 sec   (1555 perm/sec)   p_kst 1.062500e-04   p_cons 3.955250e-01   p_joint 5.250000e-04

Joint ci ratio: 4.250761e-01	ci left: 3.941461e-04	ci right 6.117153e-04	k: 84	n:170000
Cons ci ratio: 1.174897e-02	ci left: 3.933743e-01	ci right 3.980292e-01	k: 67269	n:170000
KS ci ratio: 8.764845e-01	ci left: 6.729095e-05	ci right 1.745290e-04	k: 19	n:170000
FAT4   170000 perm   110 sec   (1552 perm/sec)   p_kst 1.117647e-04   p_cons 3.957000e-01   p_joint 4.941176e-04

Joint ci ratio: 4.085827e-01	ci left: 4.070607e-04	ci right 6.206745e-04	k: 91	n:180000
Cons ci ratio: 1.141438e-02	ci left: 3.935897e-01	ci right 3.981136e-01	k: 71253	n:180000
KS ci ratio: 8.553619e-01	ci left: 6.787083e-05	ci right 1.715969e-04	k: 20	n:180000
FAT4   180000 perm   116 sec   (1551 perm/sec)   p_kst 1.111111e-04   p_cons 3.958500e-01   p_joint 5.055556e-04

Joint ci ratio: 4.154207e-01	ci left: 3.714822e-04	ci right 5.705928e-04	k: 88	n:190000
Cons ci ratio: 1.111343e-02	ci left: 3.935002e-01	ci right 3.979030e-01	k: 75183	n:190000
KS ci ratio: 8.001140e-01	ci left: 7.673848e-05	ci right 1.816329e-04	k: 23	n:190000
FAT4   190000 perm   123 sec   (1550 perm/sec)   p_kst 1.210526e-04   p_cons 3.957000e-01   p_joint 4.631579e-04

Joint ci ratio: 4.085932e-01	ci left: 3.663529e-04	ci right 5.586102e-04	k: 91	n:200000
Cons ci ratio: 1.084008e-02	ci left: 3.932013e-01	ci right 3.974918e-01	k: 79069	n:200000
KS ci ratio: 7.407567e-01	ci left: 8.896768e-05	ci right 1.964119e-04	k: 27	n:200000
FAT4   200000 perm   129 sec   (1548 perm/sec)   p_kst 1.350000e-04   p_cons 3.953450e-01   p_joint 4.550000e-04

Joint ci ratio: 4.042257e-01	ci left: 3.574573e-04	ci right 5.425029e-04	k: 93	n:210000
Cons ci ratio: 1.058585e-02	ci left: 3.929368e-01	ci right 3.971232e-01	k: 82956	n:210000
KS ci ratio: 7.039991e-01	ci left: 9.638712e-05	ci right 2.039312e-04	k: 30	n:210000
FAT4   210000 perm   136 sec   (1544 perm/sec)   p_kst 1.428571e-04   p_cons 3.950286e-01   p_joint 4.428571e-04

Joint ci ratio: 4.063982e-01	ci left: 3.371265e-04	ci right 5.128386e-04	k: 92	n:220000
Cons ci ratio: 1.034131e-02	ci left: 3.930381e-01	ci right 3.971283e-01	k: 86918	n:220000
KS ci ratio: 7.040016e-01	ci left: 9.200580e-05	ci right 1.946619e-04	k: 30	n:220000
FAT4   220000 perm   143 sec   (1539 perm/sec)   p_kst 1.363636e-04   p_cons 3.950818e-01   p_joint 4.181818e-04

Joint ci ratio: 3.979309e-01	ci left: 3.381010e-04	ci right 5.096827e-04	k: 96	n:230000
Cons ci ratio: 1.011454e-02	ci left: 3.930578e-01	ci right 3.970579e-01	k: 90863	n:230000
KS ci ratio: 6.929149e-01	ci left: 9.158002e-05	ci right 1.913077e-04	k: 31	n:230000
FAT4   230000 perm   150 sec   (1534 perm/sec)   p_kst 1.347826e-04   p_cons 3.950565e-01   p_joint 4.173913e-04

Joint ci ratio: 3.843035e-01	ci left: 3.503128e-04	ci right 5.204656e-04	k: 103	n:240000
Cons ci ratio: 9.906124e-03	ci left: 3.928811e-01	ci right 3.967965e-01	k: 94761	n:240000
KS ci ratio: 6.625512e-01	ci left: 9.811022e-05	ci right 1.979594e-04	k: 34	n:240000
FAT4   240000 perm   157 sec   (1529 perm/sec)   p_kst 1.416667e-04   p_cons 3.948375e-01   p_joint 4.291667e-04

Joint ci ratio: 3.861687e-01	ci left: 3.326871e-04	ci right 4.952625e-04	k: 102	n:250000
Cons ci ratio: 9.712434e-03	ci left: 3.926034e-01	ci right 3.964391e-01	k: 98630	n:250000
KS ci ratio: 6.625532e-01	ci left: 9.418573e-05	ci right 1.900412e-04	k: 34	n:250000
FAT4   250000 perm   164 sec   (1523 perm/sec)   p_kst 1.360000e-04   p_cons 3.945200e-01   p_joint 4.080000e-04

Joint ci ratio: 4.000087e-01	ci left: 2.956277e-04	ci right 4.466456e-04	k: 95	n:260000
Cons ci ratio: 9.524687e-03	ci left: 3.925976e-01	ci right 3.963586e-01	k: 102564	n:260000
KS ci ratio: 6.532868e-01	ci left: 9.376628e-05	ci right 1.872125e-04	k: 35	n:260000
FAT4   260000 perm   171 sec   (1518 perm/sec)   p_kst 1.346154e-04   p_cons 3.944769e-01   p_joint 3.653846e-04

Joint ci ratio: 4.000115e-01	ci left: 2.846782e-04	ci right 4.301038e-04	k: 95	n:270000
Cons ci ratio: 9.349742e-03	ci left: 3.924744e-01	ci right 3.961649e-01	k: 106466	n:270000
KS ci ratio: 6.443987e-01	ci left: 9.338672e-05	ci right 1.845848e-04	k: 36	n:270000
FAT4   270000 perm   179 sec   (1512 perm/sec)   p_kst 1.333333e-04   p_cons 3.943185e-01   p_joint 3.518519e-04

Joint ci ratio: 4.302114e-01	ci left: 2.329245e-04	ci right 3.635001e-04	k: 82	n:280000
Cons ci ratio: 9.177299e-03	ci left: 3.927140e-01	ci right 3.963382e-01	k: 110467	n:280000
KS ci ratio: 6.444003e-01	ci left: 9.005142e-05	ci right 1.779927e-04	k: 36	n:280000
FAT4   280000 perm   186 sec   (1507 perm/sec)   p_kst 1.285714e-04   p_cons 3.945250e-01   p_joint 2.928571e-04

Joint ci ratio: 4.276444e-01	ci left: 2.279684e-04	ci right 3.547843e-04	k: 83	n:290000
Cons ci ratio: 9.017830e-03	ci left: 3.927378e-01	ci right 3.962988e-01	k: 114410	n:290000
KS ci ratio: 6.358652e-01	ci left: 8.983400e-05	ci right 1.758565e-04	k: 37	n:290000
FAT4   290000 perm   193 sec   (1501 perm/sec)   p_kst 1.275862e-04   p_cons 3.945172e-01   p_joint 2.862069e-04

Joint ci ratio: 4.108646e-01	ci left: 2.412421e-04	ci right 3.687383e-04	k: 90	n:300000
Cons ci ratio: 8.869304e-03	ci left: 3.926039e-01	ci right 3.961048e-01	k: 118306	n:300000
KS ci ratio: 6.048258e-01	ci left: 9.807609e-05	ci right 1.853992e-04	k: 41	n:300000
FAT4   300000 perm   201 sec   (1495 perm/sec)   p_kst 1.366667e-04   p_cons 3.943533e-01   p_joint 3.000000e-04

Joint ci ratio: 4.021212e-01	ci left: 2.450441e-04	ci right 3.710590e-04	k: 94	n:310000
Cons ci ratio: 8.728294e-03	ci left: 3.924566e-01	ci right 3.959002e-01	k: 122195	n:310000
KS ci ratio: 5.909193e-01	ci left: 1.003866e-04	ci right 1.868365e-04	k: 43	n:310000
FAT4   310000 perm   209 sec   (1486 perm/sec)   p_kst 1.387097e-04   p_cons 3.941774e-01   p_joint 3.032258e-04

Joint ci ratio: 4.000227e-01	ci left: 2.401960e-04	ci right 3.629023e-04	k: 95	n:320000
Cons ci ratio: 8.591720e-03	ci left: 3.924344e-01	ci right 3.958237e-01	k: 126121	n:320000
KS ci ratio: 5.843171e-01	ci left: 9.990943e-05	ci right 1.845830e-04	k: 44	n:320000
FAT4   320000 perm   216 sec   (1480 perm/sec)   p_kst 1.375000e-04   p_cons 3.941281e-01   p_joint 2.968750e-04

Joint ci ratio: 2.970956e-01	ci left: 4.490481e-04	ci right 6.084212e-04	k: 173	n:330000
Cons ci ratio: 8.460021e-03	ci left: 3.924897e-01	ci right 3.958273e-01	k: 130072	n:330000
KS ci ratio: 5.717492e-01	ci left: 1.020556e-04	ci right 1.859277e-04	k: 46	n:330000
FAT4   330000 perm   224 sec   (1473 perm/sec)   p_kst 1.393939e-04   p_cons 3.941576e-01   p_joint 5.242424e-04

Joint ci ratio: 2.912933e-01	ci left: 4.549101e-04	ci right 6.126293e-04	k: 180	n:340000
Cons ci ratio: 8.335019e-03	ci left: 3.924951e-01	ci right 3.957832e-01	k: 134007	n:340000
KS ci ratio: 5.543301e-01	ci left: 1.066209e-04	ci right 1.905268e-04	k: 49	n:340000
FAT4   340000 perm   232 sec   (1465 perm/sec)   p_kst 1.441176e-04   p_cons 3.941382e-01   p_joint 5.294118e-04

Joint ci ratio: 2.843091e-01	ci left: 4.657716e-04	ci right 6.226902e-04	k: 189	n:350000
Cons ci ratio: 8.218005e-03	ci left: 3.923492e-01	ci right 3.955897e-01	k: 137889	n:350000
KS ci ratio: 5.384119e-01	ci left: 1.109622e-04	ci right 1.948272e-04	k: 52	n:350000
FAT4   350000 perm   240 sec   (1459 perm/sec)   p_kst 1.485714e-04   p_cons 3.939686e-01   p_joint 5.400000e-04

Joint ci ratio: 2.799234e-01	ci left: 4.683212e-04	ci right 6.232358e-04	k: 195	n:360000
Cons ci ratio: 8.102153e-03	ci left: 3.924255e-01	ci right 3.956207e-01	k: 141848	n:360000
KS ci ratio: 5.334037e-01	ci left: 1.102814e-04	ci right 1.925659e-04	k: 53	n:360000
FAT4   360000 perm   248 sec   (1451 perm/sec)   p_kst 1.472222e-04   p_cons 3.940222e-01   p_joint 5.416667e-04

Joint ci ratio: 2.785073e-01	ci left: 4.606906e-04	ci right 6.121749e-04	k: 197	n:370000
Cons ci ratio: 7.988942e-03	ci left: 3.926249e-01	ci right 3.957768e-01	k: 145854	n:370000
KS ci ratio: 5.334048e-01	ci left: 1.073008e-04	ci right 1.873616e-04	k: 53	n:370000
FAT4   370000 perm   256 sec   (1445 perm/sec)   p_kst 1.432432e-04   p_cons 3.942000e-01   p_joint 5.324324e-04

Joint ci ratio: 2.710771e-01	ci left: 4.755210e-04	ci right 6.270008e-04	k: 208	n:380000
Cons ci ratio: 7.884558e-03	ci left: 3.925590e-01	ci right 3.956690e-01	k: 149763	n:380000
KS ci ratio: 5.060292e-01	ci left: 1.181955e-04	ci right 2.002737e-04	k: 59	n:380000
FAT4   380000 perm   264 sec   (1438 perm/sec)   p_kst 1.552632e-04   p_cons 3.941132e-01   p_joint 5.473684e-04

Joint ci ratio: 2.723862e-01	ci left: 4.585488e-04	ci right 6.054480e-04	k: 206	n:390000
Cons ci ratio: 7.786669e-03	ci left: 3.923430e-01	ci right 3.954125e-01	k: 153612	n:390000
KS ci ratio: 4.899592e-01	ci left: 1.241328e-04	ci right 2.066732e-04	k: 63	n:390000
FAT4   390000 perm   272 sec   (1432 perm/sec)   p_kst 1.615385e-04   p_cons 3.938769e-01   p_joint 5.282051e-04

Joint ci ratio: 2.691550e-01	ci left: 4.587365e-04	ci right 6.036583e-04	k: 211	n:400000
Cons ci ratio: 7.689195e-03	ci left: 3.923329e-01	ci right 3.953637e-01	k: 157539	n:400000
KS ci ratio: 4.861760e-01	ci left: 1.232216e-04	ci right 2.043119e-04	k: 64	n:400000
FAT4   400000 perm   281 sec   (1424 perm/sec)   p_kst 1.600000e-04   p_cons 3.938475e-01   p_joint 5.275000e-04

Joint ci ratio: 2.691568e-01	ci left: 4.475475e-04	ci right 5.889355e-04	k: 211	n:410000
Cons ci ratio: 7.593817e-03	ci left: 3.924161e-01	ci right 3.954098e-01	k: 161504	n:410000
KS ci ratio: 4.824792e-01	ci left: 1.223573e-04	ci right 2.020635e-04	k: 65	n:410000
FAT4   410000 perm   289 sec   (1417 perm/sec)   p_kst 1.585366e-04   p_cons 3.939122e-01   p_joint 5.146341e-04

Joint ci ratio: 2.618459e-01	ci left: 4.635623e-04	ci right 6.053809e-04	k: 223	n:420000
Cons ci ratio: 7.504073e-03	ci left: 3.923576e-01	ci right 3.953153e-01	k: 165411	n:420000
KS ci ratio: 4.684900e-01	ci left: 1.278263e-04	ci right 2.079096e-04	k: 69	n:420000
FAT4   420000 perm   298 sec   (1409 perm/sec)   p_kst 1.642857e-04   p_cons 3.938357e-01   p_joint 5.309524e-04

Joint ci ratio: 2.584077e-01	ci left: 4.658256e-04	ci right 6.061634e-04	k: 229	n:430000
Cons ci ratio: 7.413788e-03	ci left: 3.925367e-01	ci right 3.954600e-01	k: 169419	n:430000
KS ci ratio: 4.684909e-01	ci left: 1.248535e-04	ci right 2.030745e-04	k: 69	n:430000
FAT4   430000 perm   307 sec   (1403 perm/sec)   p_kst 1.604651e-04   p_cons 3.939977e-01   p_joint 5.325581e-04

Joint ci ratio: 2.561900e-01	ci left: 4.637433e-04	ci right 6.020630e-04	k: 233	n:440000
Cons ci ratio: 7.325605e-03	ci left: 3.927784e-01	ci right 3.956685e-01	k: 173458	n:440000
KS ci ratio: 4.651803e-01	ci left: 1.240212e-04	ci right 2.009976e-04	k: 70	n:440000
FAT4   440000 perm   315 sec   (1396 perm/sec)   p_kst 1.590909e-04   p_cons 3.942227e-01   p_joint 5.295455e-04

Joint ci ratio: 2.529671e-01	ci left: 4.659206e-04	ci right 6.028659e-04	k: 239	n:450000
Cons ci ratio: 7.242985e-03	ci left: 3.928451e-01	ci right 3.957030e-01	k: 177423	n:450000
KS ci ratio: 4.556528e-01	ci left: 1.271584e-04	ci right 2.039658e-04	k: 73	n:450000
FAT4   450000 perm   324 sec   (1387 perm/sec)   p_kst 1.622222e-04   p_cons 3.942733e-01   p_joint 5.311111e-04

Joint ci ratio: 2.524430e-01	ci left: 4.578279e-04	ci right 5.920718e-04	k: 240	n:460000
Cons ci ratio: 7.163295e-03	ci left: 3.928960e-01	ci right 3.957227e-01	k: 181382	n:460000
KS ci ratio: 4.466876e-01	ci left: 1.301747e-04	ci right 2.067899e-04	k: 76	n:460000
FAT4   460000 perm   334 sec   (1378 perm/sec)   p_kst 1.652174e-04   p_cons 3.943087e-01   p_joint 5.217391e-04

Joint ci ratio: 2.567438e-01	ci left: 4.321508e-04	ci right 5.613707e-04	k: 232	n:470000
Cons ci ratio: 7.088325e-03	ci left: 3.928004e-01	ci right 3.955967e-01	k: 185273	n:470000
KS ci ratio: 4.438153e-01	ci left: 1.292940e-04	ci right 2.047549e-04	k: 77	n:470000
FAT4   470000 perm   343 sec   (1372 perm/sec)   p_kst 1.638298e-04   p_cons 3.941979e-01   p_joint 4.936170e-04

Joint ci ratio: 2.519234e-01	ci left: 4.407029e-04	ci right 5.696177e-04	k: 241	n:480000
Cons ci ratio: 7.013518e-03	ci left: 3.928546e-01	ci right 3.956217e-01	k: 189234	n:480000
KS ci ratio: 4.328542e-01	ci left: 1.340140e-04	ci right 2.097365e-04	k: 81	n:480000
FAT4   480000 perm   351 sec   (1366 perm/sec)   p_kst 1.687500e-04   p_cons 3.942375e-01   p_joint 5.020833e-04

Joint ci ratio: 2.514055e-01	ci left: 4.336209e-04	ci right 5.601624e-04	k: 242	n:490000
Cons ci ratio: 6.941980e-03	ci left: 3.928415e-01	ci right 3.955801e-01	k: 193163	n:490000
KS ci ratio: 4.302390e-01	ci left: 1.330981e-04	ci right 2.077175e-04	k: 82	n:490000
FAT4   490000 perm   360 sec   (1360 perm/sec)   p_kst 1.673469e-04   p_cons 3.942102e-01   p_joint 4.938776e-04

Joint ci ratio: 2.503780e-01	ci left: 4.286968e-04	ci right 5.532103e-04	k: 244	n:500000
Cons ci ratio: 6.874688e-03	ci left: 3.926832e-01	ci right 3.953940e-01	k: 197019	n:500000
KS ci ratio: 4.251471e-01	ci left: 1.340055e-04	ci right 2.079913e-04	k: 84	n:500000
FAT4   500000 perm   369 sec   (1354 perm/sec)   p_kst 1.680000e-04   p_cons 3.940380e-01   p_joint 4.880000e-04

Joint ci ratio: 2.468755e-01	ci left: 4.331615e-04	ci right 5.569418e-04	k: 251	n:510000
Cons ci ratio: 6.807498e-03	ci left: 3.926586e-01	ci right 3.953426e-01	k: 200940	n:510000
KS ci ratio: 4.202319e-01	ci left: 1.348823e-04	ci right 2.082494e-04	k: 86	n:510000
FAT4   510000 perm   379 sec   (1347 perm/sec)   p_kst 1.686275e-04   p_cons 3.940000e-01   p_joint 4.921569e-04

Joint ci ratio: 2.503804e-01	ci left: 4.122080e-04	ci right 5.319337e-04	k: 244	n:520000
Cons ci ratio: 6.743869e-03	ci left: 3.925197e-01	ci right 3.951776e-01	k: 204801	n:520000
KS ci ratio: 4.131681e-01	ci left: 1.374528e-04	ci right 2.106154e-04	k: 89	n:520000
FAT4   520000 perm   388 sec   (1341 perm/sec)   p_kst 1.711538e-04   p_cons 3.938481e-01   p_joint 4.692308e-04

Joint ci ratio: 2.556557e-01	ci left: 3.867582e-04	ci right 5.018364e-04	k: 234	n:530000
Cons ci ratio: 6.681489e-03	ci left: 3.924220e-01	ci right 3.950546e-01	k: 208681	n:530000
KS ci ratio: 4.131688e-01	ci left: 1.348593e-04	ci right 2.066416e-04	k: 89	n:530000
FAT4   530000 perm   397 sec   (1335 perm/sec)   p_kst 1.679245e-04   p_cons 3.937377e-01   p_joint 4.415094e-04

Joint ci ratio: 2.545752e-01	ci left: 3.830628e-04	ci right 4.964833e-04	k: 236	n:540000
Cons ci ratio: 6.619216e-03	ci left: 3.924428e-01	ci right 3.950509e-01	k: 212623	n:540000
KS ci ratio: 4.131695e-01	ci left: 1.323619e-04	ci right 2.028150e-04	k: 89	n:540000
FAT4   540000 perm   406 sec   (1329 perm/sec)   p_kst 1.648148e-04   p_cons 3.937463e-01   p_joint 4.370370e-04

Joint ci ratio: 2.529795e-01	ci left: 3.812056e-04	ci right 4.932572e-04	k: 239	n:550000
Cons ci ratio: 6.556056e-03	ci left: 3.926519e-01	ci right 3.952364e-01	k: 216669	n:550000
KS ci ratio: 4.108933e-01	ci left: 1.315849e-04	ci right 2.011331e-04	k: 90	n:550000
FAT4   550000 perm   416 sec   (1323 perm/sec)   p_kst 1.636364e-04   p_cons 3.939436e-01   p_joint 4.345455e-04

Joint ci ratio: 2.508974e-01	ci left: 3.810902e-04	ci right 4.920419e-04	k: 243	n:560000
Cons ci ratio: 6.498409e-03	ci left: 3.925789e-01	ci right 3.951401e-01	k: 220561	n:560000
KS ci ratio: 4.064509e-01	ci left: 1.324395e-04	ci right 2.014781e-04	k: 92	n:560000
FAT4   560000 perm   425 sec   (1317 perm/sec)   p_kst 1.642857e-04   p_cons 3.938589e-01   p_joint 4.339286e-04

Joint ci ratio: 2.488659e-01	ci left: 3.809825e-04	ci right 4.908657e-04	k: 247	n:570000
Cons ci ratio: 6.441712e-03	ci left: 3.925488e-01	ci right 3.950874e-01	k: 224476	n:570000
KS ci ratio: 4.064515e-01	ci left: 1.301159e-04	ci right 1.979435e-04	k: 92	n:570000
FAT4   570000 perm   435 sec   (1311 perm/sec)   p_kst 1.614035e-04   p_cons 3.938175e-01   p_joint 4.333333e-04

Joint ci ratio: 2.535113e-01	ci left: 3.598728e-04	ci right 4.659113e-04	k: 238	n:580000
Cons ci ratio: 6.385482e-03	ci left: 3.925939e-01	ci right 3.951106e-01	k: 228434	n:580000
KS ci ratio: 4.064521e-01	ci left: 1.278725e-04	ci right 1.945307e-04	k: 92	n:580000
FAT4   580000 perm   444 sec   (1305 perm/sec)   p_kst 1.586207e-04   p_cons 3.938517e-01   p_joint 4.103448e-04

Joint ci ratio: 2.524576e-01	ci left: 3.569481e-04	ci right 4.616189e-04	k: 240	n:590000
Cons ci ratio: 6.331643e-03	ci left: 3.925665e-01	ci right 3.950617e-01	k: 232350	n:590000
KS ci ratio: 4.064527e-01	ci left: 1.257052e-04	ci right 1.912336e-04	k: 92	n:590000
FAT4   590000 perm   454 sec   (1299 perm/sec)   p_kst 1.559322e-04   p_cons 3.938136e-01   p_joint 4.067797e-04

Joint ci ratio: 2.478707e-01	ci left: 3.650589e-04	ci right 4.698634e-04	k: 249	n:600000
Cons ci ratio: 6.279998e-03	ci left: 3.924751e-01	ci right 3.949492e-01	k: 236227	n:600000
KS ci ratio: 4.021513e-01	ci left: 1.266044e-04	ci right 1.917170e-04	k: 94	n:600000
FAT4   600000 perm   464 sec   (1294 perm/sec)   p_kst 1.566667e-04   p_cons 3.937117e-01   p_joint 4.150000e-04

Joint ci ratio: 2.454284e-01	ci left: 3.667645e-04	ci right 4.708630e-04	k: 254	n:610000
Cons ci ratio: 6.228805e-03	ci left: 3.924474e-01	ci right 3.949011e-01	k: 240141	n:610000
KS ci ratio: 3.959477e-01	ci left: 1.289534e-04	ci right 1.939831e-04	k: 97	n:610000
FAT4   610000 perm   474 sec   (1288 perm/sec)   p_kst 1.590164e-04   p_cons 3.936738e-01   p_joint 4.163934e-04

Joint ci ratio: 2.672952e-01	ci left: 3.004690e-04	ci right 3.946255e-04	k: 214	n:620000
Cons ci ratio: 6.179741e-03	ci left: 3.923514e-01	ci right 3.947851e-01	k: 244012	n:620000
KS ci ratio: 3.900225e-01	ci left: 1.312341e-04	ci right 1.961688e-04	k: 100	n:620000
FAT4   620000 perm   484 sec   (1282 perm/sec)   p_kst 1.612903e-04   p_cons 3.935677e-01   p_joint 3.451613e-04

Joint ci ratio: 2.691812e-01	ci left: 2.912578e-04	ci right 3.832805e-04	k: 211	n:630000
Cons ci ratio: 6.131166e-03	ci left: 3.923092e-01	ci right 3.947235e-01	k: 247915	n:630000
KS ci ratio: 3.881061e-01	ci left: 1.305830e-04	ci right 1.947969e-04	k: 101	n:630000
FAT4   630000 perm   494 sec   (1276 perm/sec)   p_kst 1.603175e-04   p_cons 3.935159e-01   p_joint 3.349206e-04

Joint ci ratio: 2.691819e-01	ci left: 2.867068e-04	ci right 3.772919e-04	k: 211	n:640000
Cons ci ratio: 6.082842e-03	ci left: 3.923372e-01	ci right 3.947325e-01	k: 251862	n:640000
KS ci ratio: 3.881066e-01	ci left: 1.285427e-04	ci right 1.917532e-04	k: 101	n:640000
FAT4   640000 perm   504 sec   (1270 perm/sec)   p_kst 1.578125e-04   p_cons 3.935344e-01   p_joint 3.296875e-04

Joint ci ratio: 2.698199e-01	ci left: 2.808613e-04	ci right 3.698454e-04	k: 210	n:650000
Cons ci ratio: 6.036479e-03	ci left: 3.922982e-01	ci right 3.946750e-01	k: 255766	n:650000
KS ci ratio: 3.881071e-01	ci left: 1.265650e-04	ci right 1.888032e-04	k: 101	n:650000
FAT4   650000 perm   514 sec   (1265 perm/sec)   p_kst 1.553846e-04   p_cons 3.934862e-01   p_joint 3.230769e-04

Joint ci ratio: 2.724159e-01	ci left: 2.709569e-04	ci right 3.577704e-04	k: 206	n:660000
Cons ci ratio: 5.991541e-03	ci left: 3.922303e-01	ci right 3.945889e-01	k: 259650	n:660000
KS ci ratio: 3.862186e-01	ci left: 1.260151e-04	ci right 1.876045e-04	k: 102	n:660000
FAT4   660000 perm   524 sec   (1259 perm/sec)   p_kst 1.545455e-04   p_cons 3.934091e-01   p_joint 3.121212e-04

Joint ci ratio: 2.704631e-01	ci left: 2.710857e-04	ci right 3.572121e-04	k: 209	n:670000
Cons ci ratio: 5.945621e-03	ci left: 3.923225e-01	ci right 3.946635e-01	k: 263640	n:670000
KS ci ratio: 3.825226e-01	ci left: 1.268309e-04	ci right 1.880766e-04	k: 104	n:670000
FAT4   670000 perm   535 sec   (1253 perm/sec)   p_kst 1.552239e-04   p_cons 3.934925e-01   p_joint 3.119403e-04

Joint ci ratio: 2.717613e-01	ci left: 2.643577e-04	ci right 3.488186e-04	k: 207	n:680000
Cons ci ratio: 5.899341e-03	ci left: 3.925253e-01	ci right 3.948492e-01	k: 267707	n:680000
KS ci ratio: 3.771719e-01	ci left: 1.289563e-04	ci right 1.901418e-04	k: 107	n:680000
FAT4   680000 perm   546 sec   (1246 perm/sec)   p_kst 1.573529e-04   p_cons 3.936868e-01   p_joint 3.044118e-04

Joint ci ratio: 2.005090e-01	ci left: 4.981273e-04	ci right 6.104827e-04	k: 381	n:690000
Cons ci ratio: 5.857607e-03	ci left: 3.924383e-01	ci right 3.947452e-01	k: 271578	n:690000
KS ci ratio: 3.737273e-01	ci left: 1.297124e-04	ci right 1.905570e-04	k: 109	n:690000
FAT4   690000 perm   556 sec   (1241 perm/sec)   p_kst 1.579710e-04   p_cons 3.935913e-01   p_joint 5.521739e-04

Joint ci ratio: 2.037371e-01	ci left: 4.747353e-04	ci right 5.837530e-04	k: 369	n:700000
Cons ci ratio: 5.815459e-03	ci left: 3.924595e-01	ci right 3.947499e-01	k: 275523	n:700000
KS ci ratio: 3.703753e-01	ci left: 1.304494e-04	ci right 1.909578e-04	k: 111	n:700000
FAT4   700000 perm   567 sec   (1235 perm/sec)   p_kst 1.585714e-04   p_cons 3.936043e-01   p_joint 5.271429e-04

Joint ci ratio: 2.031891e-01	ci left: 4.707222e-04	ci right 5.784915e-04	k: 371	n:710000
Cons ci ratio: 5.775315e-03	ci left: 3.923887e-01	ci right 3.946628e-01	k: 279403	n:710000
KS ci ratio: 3.703757e-01	ci left: 1.286120e-04	ci right 1.882683e-04	k: 111	n:710000
FAT4   710000 perm   577 sec   (1230 perm/sec)   p_kst 1.563380e-04   p_cons 3.935254e-01   p_joint 5.225352e-04

Joint ci ratio: 1.997281e-01	ci left: 4.813295e-04	ci right 5.894216e-04	k: 384	n:720000
Cons ci ratio: 5.734222e-03	ci left: 3.924671e-01	ci right 3.947254e-01	k: 283389	n:720000
KS ci ratio: 3.655124e-01	ci left: 1.306072e-04	ci right 1.902037e-04	k: 114	n:720000
FAT4   720000 perm   588 sec   (1225 perm/sec)   p_kst 1.583333e-04   p_cons 3.935958e-01   p_joint 5.333333e-04

Joint ci ratio: 2.007751e-01	ci left: 4.695309e-04	ci right 5.755939e-04	k: 380	n:730000
Cons ci ratio: 5.694124e-03	ci left: 3.925324e-01	ci right 3.947753e-01	k: 287367	n:730000
KS ci ratio: 3.623748e-01	ci left: 1.313073e-04	ci right 1.905873e-04	k: 116	n:730000
FAT4   730000 perm   598 sec   (1220 perm/sec)   p_kst 1.589041e-04   p_cons 3.936534e-01   p_joint 5.205479e-04

Joint ci ratio: 2.157406e-01	ci left: 3.978548e-04	ci right 4.953145e-04	k: 329	n:740000
Cons ci ratio: 5.653864e-03	ci left: 3.926798e-01	ci right 3.949075e-01	k: 291407	n:740000
KS ci ratio: 3.655132e-01	ci left: 1.270772e-04	ci right 1.850631e-04	k: 114	n:740000
FAT4   740000 perm   609 sec   (1215 perm/sec)   p_kst 1.540541e-04   p_cons 3.937932e-01   p_joint 4.445946e-04

Joint ci ratio: 2.138055e-01	ci left: 4.001199e-04	ci right 4.971399e-04	k: 335	n:750000
Cons ci ratio: 5.615244e-03	ci left: 3.927553e-01	ci right 3.949682e-01	k: 295396	n:750000
KS ci ratio: 3.623756e-01	ci left: 1.278057e-04	ci right 1.855051e-04	k: 116	n:750000
FAT4   750000 perm   620 sec   (1210 perm/sec)   p_kst 1.546667e-04   p_cons 3.938613e-01   p_joint 4.466667e-04

Joint ci ratio: 2.147675e-01	ci left: 3.911194e-04	ci right 4.864399e-04	k: 332	n:760000
Cons ci ratio: 5.579342e-03	ci left: 3.926631e-01	ci right 3.948614e-01	k: 299259	n:760000
KS ci ratio: 3.608370e-01	ci left: 1.273203e-04	ci right 1.844991e-04	k: 117	n:760000
FAT4   760000 perm   631 sec   (1204 perm/sec)   p_kst 1.539474e-04   p_cons 3.937618e-01   p_joint 4.368421e-04

Joint ci ratio: 2.141257e-01	ci left: 3.884978e-04	ci right 4.828593e-04	k: 334	n:770000
Cons ci ratio: 5.542476e-03	ci left: 3.927149e-01	ci right 3.948989e-01	k: 303231	n:770000
KS ci ratio: 3.563354e-01	ci left: 1.292119e-04	ci right 1.863486e-04	k: 120	n:770000
FAT4   770000 perm   643 sec   (1198 perm/sec)   p_kst 1.558442e-04   p_cons 3.938065e-01   p_joint 4.337662e-04

Joint ci ratio: 2.222383e-01	ci left: 3.544279e-04	ci right 4.442223e-04	k: 310	n:780000
Cons ci ratio: 5.506523e-03	ci left: 3.927488e-01	ci right 3.949187e-01	k: 307190	n:780000
KS ci ratio: 3.548721e-01	ci left: 1.287229e-04	ci right 1.853556e-04	k: 121	n:780000
FAT4   780000 perm   654 sec   (1193 perm/sec)   p_kst 1.551282e-04   p_cons 3.938333e-01   p_joint 3.974359e-04

Joint ci ratio: 2.259019e-01	ci left: 3.379933e-04	ci right 4.252323e-04	k: 300	n:790000
Cons ci ratio: 5.471450e-03	ci left: 3.927654e-01	ci right 3.949215e-01	k: 311136	n:790000
KS ci ratio: 3.548725e-01	ci left: 1.270935e-04	ci right 1.830094e-04	k: 121	n:790000
FAT4   790000 perm   666 sec   (1187 perm/sec)   p_kst 1.531646e-04   p_cons 3.938430e-01   p_joint 3.797468e-04

Joint ci ratio: 2.281890e-01	ci left: 3.266947e-04	ci right 4.119913e-04	k: 294	n:800000
Cons ci ratio: 5.437123e-03	ci left: 3.927741e-01	ci right 3.949167e-01	k: 315076	n:800000
KS ci ratio: 3.534271e-01	ci left: 1.266436e-04	ci right 1.820825e-04	k: 122	n:800000
FAT4   800000 perm   677 sec   (1182 perm/sec)   p_kst 1.525000e-04   p_cons 3.938450e-01   p_joint 3.675000e-04

Joint ci ratio: 2.281895e-01	ci left: 3.226613e-04	ci right 4.069051e-04	k: 294	n:810000
Cons ci ratio: 5.403030e-03	ci left: 3.928184e-01	ci right 3.949478e-01	k: 319045	n:810000
KS ci ratio: 3.519992e-01	ci left: 1.262053e-04	ci right 1.811781e-04	k: 123	n:810000
FAT4   810000 perm   688 sec   (1177 perm/sec)   p_kst 1.518519e-04   p_cons 3.938827e-01   p_joint 3.629630e-04

Joint ci ratio: 2.255290e-01	ci left: 3.267780e-04	ci right 4.109636e-04	k: 301	n:820000
Cons ci ratio: 5.370119e-03	ci left: 3.928129e-01	ci right 3.949293e-01	k: 322974	n:820000
KS ci ratio: 3.519996e-01	ci left: 1.246662e-04	ci right 1.789687e-04	k: 123	n:820000
FAT4   820000 perm   700 sec   (1172 perm/sec)   p_kst 1.500000e-04   p_cons 3.938707e-01   p_joint 3.670732e-04

Joint ci ratio: 2.251569e-01	ci left: 3.239777e-04	ci right 4.072851e-04	k: 302	n:830000
Cons ci ratio: 5.337640e-03	ci left: 3.928221e-01	ci right 3.949256e-01	k: 326915	n:830000
KS ci ratio: 3.519999e-01	ci left: 1.231641e-04	ci right 1.768124e-04	k: 123	n:830000
FAT4   830000 perm   711 sec   (1167 perm/sec)   p_kst 1.481928e-04   p_cons 3.938735e-01   p_joint 3.638554e-04

Joint ci ratio: 2.247866e-01	ci left: 3.212441e-04	ci right 4.036940e-04	k: 303	n:840000
Cons ci ratio: 5.306127e-03	ci left: 3.927966e-01	ci right 3.948875e-01	k: 330827	n:840000
KS ci ratio: 3.520002e-01	ci left: 1.216979e-04	ci right 1.747076e-04	k: 123	n:840000
FAT4   840000 perm   723 sec   (1162 perm/sec)   p_kst 1.464286e-04   p_cons 3.938417e-01   p_joint 3.607143e-04

Joint ci ratio: 2.233221e-01	ci left: 3.219066e-04	ci right 4.039142e-04	k: 307	n:850000
Cons ci ratio: 5.275555e-03	ci left: 3.927364e-01	ci right 3.948149e-01	k: 334709	n:850000
KS ci ratio: 3.491953e-01	ci left: 1.224119e-04	ci right 1.752115e-04	k: 125	n:850000
FAT4   850000 perm   734 sec   (1158 perm/sec)   p_kst 1.470588e-04   p_cons 3.937753e-01   p_joint 3.611765e-04

Joint ci ratio: 2.226008e-01	ci left: 3.203592e-04	ci right 4.016728e-04	k: 309	n:860000
Cons ci ratio: 5.243986e-03	ci left: 3.928160e-01	ci right 3.948824e-01	k: 338710	n:860000
KS ci ratio: 3.491956e-01	ci left: 1.209885e-04	ci right 1.731742e-04	k: 125	n:860000
FAT4   860000 perm   746 sec   (1153 perm/sec)   p_kst 1.453488e-04   p_cons 3.938488e-01   p_joint 3.593023e-04

Joint ci ratio: 2.236866e-01	ci left: 3.134212e-04	ci right 3.934153e-04	k: 306	n:870000
Cons ci ratio: 5.214847e-03	ci left: 3.927226e-01	ci right 3.947770e-01	k: 342562	n:870000
KS ci ratio: 3.464566e-01	ci left: 1.216959e-04	ci right 1.736825e-04	k: 127	n:870000
FAT4   870000 perm   757 sec   (1149 perm/sec)   p_kst 1.459770e-04   p_cons 3.937494e-01   p_joint 3.517241e-04

Joint ci ratio: 2.226017e-01	ci left: 3.130782e-04	ci right 3.925440e-04	k: 309	n:880000
Cons ci ratio: 5.185435e-03	ci left: 3.927006e-01	ci right 3.947433e-01	k: 346475	n:880000
KS ci ratio: 3.464569e-01	ci left: 1.203129e-04	ci right 1.717089e-04	k: 127	n:880000
FAT4   880000 perm   769 sec   (1144 perm/sec)   p_kst 1.443182e-04   p_cons 3.937216e-01   p_joint 3.511364e-04

Joint ci ratio: 2.226021e-01	ci left: 3.095604e-04	ci right 3.881335e-04	k: 309	n:890000
Cons ci ratio: 5.156976e-03	ci left: 3.926365e-01	ci right 3.946676e-01	k: 350350	n:890000
KS ci ratio: 3.464572e-01	ci left: 1.189611e-04	ci right 1.697796e-04	k: 127	n:890000
FAT4   890000 perm   781 sec   (1139 perm/sec)   p_kst 1.426966e-04   p_cons 3.936517e-01   p_joint 3.471910e-04

Joint ci ratio: 2.208282e-01	ci left: 3.113679e-04	ci right 3.896845e-04	k: 314	n:900000
Cons ci ratio: 5.128145e-03	ci left: 3.926515e-01	ci right 3.946714e-01	k: 354295	n:900000
KS ci ratio: 3.424669e-01	ci left: 1.206843e-04	ci right 1.715137e-04	k: 130	n:900000
FAT4   900000 perm   794 sec   (1134 perm/sec)   p_kst 1.444444e-04   p_cons 3.936611e-01   p_joint 3.488889e-04

Joint ci ratio: 2.204788e-01	ci left: 3.089844e-04	ci right 3.865618e-04	k: 315	n:910000
Cons ci ratio: 5.099077e-03	ci left: 3.927333e-01	ci right 3.947421e-01	k: 358301	n:910000
KS ci ratio: 3.398821e-01	ci left: 1.213676e-04	ci right 1.720143e-04	k: 132	n:910000
FAT4   910000 perm   806 sec   (1129 perm/sec)   p_kst 1.450549e-04   p_cons 3.937374e-01   p_joint 3.461538e-04

Joint ci ratio: 2.177393e-01	ci left: 3.138444e-04	ci right 3.915320e-04	k: 323	n:920000
Cons ci ratio: 5.071905e-03	ci left: 3.926808e-01	ci right 3.946786e-01	k: 362185	n:920000
KS ci ratio: 3.361122e-01	ci left: 1.230326e-04	ci right 1.736812e-04	k: 135	n:920000
FAT4   920000 perm   818 sec   (1125 perm/sec)   p_kst 1.467391e-04   p_cons 3.936793e-01   p_joint 3.510870e-04

Joint ci ratio: 2.177397e-01	ci left: 3.104697e-04	ci right 3.873221e-04	k: 323	n:930000
Cons ci ratio: 5.044049e-03	ci left: 3.927348e-01	ci right 3.947218e-01	k: 366167	n:930000
KS ci ratio: 3.361125e-01	ci left: 1.217096e-04	ci right 1.718137e-04	k: 135	n:930000
FAT4   930000 perm   831 sec   (1120 perm/sec)   p_kst 1.451613e-04   p_cons 3.937280e-01   p_joint 3.473118e-04

Joint ci ratio: 2.167387e-01	ci left: 3.101847e-04	ci right 3.865665e-04	k: 326	n:940000
Cons ci ratio: 5.017095e-03	ci left: 3.927451e-01	ci right 3.947215e-01	k: 370109	n:940000
KS ci ratio: 3.348836e-01	ci left: 1.213891e-04	ci right 1.711390e-04	k: 136	n:940000
FAT4   940000 perm   843 sec   (1115 perm/sec)   p_kst 1.446809e-04   p_cons 3.937330e-01   p_joint 3.468085e-04

Joint ci ratio: 2.174052e-01	ci left: 3.049287e-04	ci right 3.802780e-04	k: 324	n:950000
Cons ci ratio: 4.990821e-03	ci left: 3.927310e-01	ci right 3.946970e-01	k: 374028	n:950000
KS ci ratio: 3.336681e-01	ci left: 1.210756e-04	ci right 1.704782e-04	k: 137	n:950000
FAT4   950000 perm   856 sec   (1110 perm/sec)   p_kst 1.442105e-04   p_cons 3.937137e-01   p_joint 3.410526e-04

Joint ci ratio: 2.177409e-01	ci left: 3.007673e-04	ci right 3.752185e-04	k: 323	n:960000
Cons ci ratio: 4.964425e-03	ci left: 3.927683e-01	ci right 3.947240e-01	k: 377996	n:960000
KS ci ratio: 3.336684e-01	ci left: 1.198144e-04	ci right 1.687024e-04	k: 137	n:960000
FAT4   960000 perm   868 sec   (1106 perm/sec)   p_kst 1.427083e-04   p_cons 3.937458e-01   p_joint 3.364583e-04

Joint ci ratio: 2.180782e-01	ci left: 2.966919e-04	ci right 3.702633e-04	k: 322	n:970000
Cons ci ratio: 4.939179e-03	ci left: 3.927337e-01	ci right 3.946793e-01	k: 381895	n:970000
KS ci ratio: 3.312764e-01	ci left: 1.204689e-04	ci right 1.691965e-04	k: 139	n:970000
FAT4   970000 perm   881 sec   (1101 perm/sec)   p_kst 1.432990e-04   p_cons 3.937062e-01   p_joint 3.319588e-04

Joint ci ratio: 2.240564e-01	ci left: 2.772775e-04	ci right 3.481798e-04	k: 305	n:980000
Cons ci ratio: 4.913684e-03	ci left: 3.927611e-01	ci right 3.946967e-01	k: 385854	n:980000
KS ci ratio: 3.312766e-01	ci left: 1.192396e-04	ci right 1.674701e-04	k: 139	n:980000
FAT4   980000 perm   894 sec   (1097 perm/sec)   p_kst 1.418367e-04   p_cons 3.937286e-01   p_joint 3.112245e-04

Joint ci ratio: 2.240567e-01	ci left: 2.744767e-04	ci right 3.446629e-04	k: 305	n:990000
Cons ci ratio: 4.888642e-03	ci left: 3.927818e-01	ci right 3.947077e-01	k: 389807	n:990000
KS ci ratio: 3.300999e-01	ci left: 1.189614e-04	ci right 1.668721e-04	k: 140	n:990000
FAT4   990000 perm   906 sec   (1092 perm/sec)   p_kst 1.414141e-04   p_cons 3.937444e-01   p_joint 3.080808e-04

Joint ci ratio: 2.233282e-01	ci left: 2.736198e-04	ci right 3.433281e-04	k: 307	n:1000000
Cons ci ratio: 4.864214e-03	ci left: 3.927792e-01	ci right 3.946954e-01	k: 393737	n:1000000
KS ci ratio: 3.289356e-01	ci left: 1.186891e-04	ci right 1.662858e-04	k: 141	n:1000000
FAT4   1000000 perm   919 sec   (1088 perm/sec)   p_kst 1.410000e-04   p_cons 3.937370e-01   p_joint 3.070000e-04

Joint ci ratio: 2.226068e-01	ci left: 2.727803e-04	ci right 3.420195e-04	k: 309	n:1010000
Cons ci ratio: 4.839565e-03	ci left: 3.928341e-01	ci right 3.947408e-01	k: 397725	n:1010000
KS ci ratio: 3.277835e-01	ci left: 1.184225e-04	ci right 1.657109e-04	k: 142	n:1010000
FAT4   1010000 perm   931 sec   (1085 perm/sec)   p_kst 1.405941e-04   p_cons 3.937871e-01   p_joint 3.059406e-04

Joint ci ratio: 2.215374e-01	ci left: 2.728836e-04	ci right 3.417709e-04	k: 312	n:1020000
Cons ci ratio: 4.815496e-03	ci left: 3.928673e-01	ci right 3.947647e-01	k: 401692	n:1020000
KS ci ratio: 3.266434e-01	ci left: 1.181613e-04	ci right 1.651469e-04	k: 143	n:1020000
FAT4   1020000 perm   944 sec   (1081 perm/sec)   p_kst 1.401961e-04   p_cons 3.938157e-01   p_joint 3.058824e-04

Joint ci ratio: 2.211846e-01	ci left: 2.711512e-04	ci right 3.394773e-04	k: 313	n:1030000
Cons ci ratio: 4.791684e-03	ci left: 3.929096e-01	ci right 3.947978e-01	k: 405669	n:1030000
KS ci ratio: 3.266437e-01	ci left: 1.170141e-04	ci right 1.635435e-04	k: 143	n:1030000
FAT4   1030000 perm   957 sec   (1076 perm/sec)   p_kst 1.388350e-04   p_cons 3.938534e-01   p_joint 3.038835e-04

Joint ci ratio: 2.274289e-01	ci left: 2.531158e-04	ci right 3.189506e-04	k: 296	n:1040000
Cons ci ratio: 4.768241e-03	ci left: 3.929492e-01	ci right 3.948283e-01	k: 409644	n:1040000
KS ci ratio: 3.232931e-01	ci left: 1.185383e-04	ci right 1.650901e-04	k: 146	n:1040000
FAT4   1040000 perm   971 sec   (1071 perm/sec)   p_kst 1.403846e-04   p_cons 3.938885e-01   p_joint 2.846154e-04

Joint ci ratio: 2.285869e-01	ci left: 2.480111e-04	ci right 3.128931e-04	k: 293	n:1050000
Cons ci ratio: 4.745584e-03	ci left: 3.929433e-01	ci right 3.948134e-01	k: 413572	n:1050000
KS ci ratio: 3.211160e-01	ci left: 1.191601e-04	ci right 1.655761e-04	k: 148	n:1050000
FAT4   1050000 perm   986 sec   (1065 perm/sec)   p_kst 1.409524e-04   p_cons 3.938781e-01   p_joint 2.790476e-04

Joint ci ratio: 2.262892e-01	ci left: 2.510094e-04	ci right 3.159235e-04	k: 299	n:1060000
Cons ci ratio: 4.723452e-03	ci left: 3.929168e-01	ci right 3.947781e-01	k: 417478	n:1060000
KS ci ratio: 3.189822e-01	ci left: 1.197712e-04	ci right 1.660519e-04	k: 150	n:1060000
FAT4   1060000 perm   1000 sec   (1060 perm/sec)   p_kst 1.415094e-04   p_cons 3.938472e-01   p_joint 2.820755e-04

Joint ci ratio: 1.928533e-01	ci left: 3.487655e-04	ci right 4.240756e-04	k: 412	n:1070000
Cons ci ratio: 4.701535e-03	ci left: 3.929002e-01	ci right 3.947527e-01	k: 421394	n:1070000
KS ci ratio: 3.168904e-01	ci left: 1.203719e-04	ci right 1.665178e-04	k: 152	n:1070000
FAT4   1070000 perm   1014 sec   (1056 perm/sec)   p_kst 1.420561e-04   p_cons 3.938262e-01   p_joint 3.850467e-04

Joint ci ratio: 1.926205e-01	ci left: 3.464174e-04	ci right 4.211195e-04	k: 413	n:1080000
Cons ci ratio: 4.680057e-03	ci left: 3.928700e-01	ci right 3.947139e-01	k: 425295	n:1080000
KS ci ratio: 3.168906e-01	ci left: 1.192573e-04	ci right 1.649760e-04	k: 152	n:1080000
FAT4   1080000 perm   1027 sec   (1052 perm/sec)   p_kst 1.407407e-04   p_cons 3.937917e-01   p_joint 3.824074e-04

Joint ci ratio: 1.935585e-01	ci left: 3.397469e-04	ci right 4.134093e-04	k: 409	n:1090000
Cons ci ratio: 4.659049e-03	ci left: 3.928221e-01	ci right 3.946574e-01	k: 429176	n:1090000
KS ci ratio: 3.158601e-01	ci left: 1.190078e-04	ci right 1.644525e-04	k: 153	n:1090000
FAT4   1090000 perm   1040 sec   (1048 perm/sec)   p_kst 1.403670e-04   p_cons 3.937394e-01   p_joint 3.752294e-04

Joint ci ratio: 1.926211e-01	ci left: 3.401188e-04	ci right 4.134630e-04	k: 413	n:1100000
Cons ci ratio: 4.637614e-03	ci left: 3.928477e-01	ci right 3.946747e-01	k: 433137	n:1100000
KS ci ratio: 3.138288e-01	ci left: 1.196004e-04	ci right 1.649188e-04	k: 155	n:1100000
FAT4   1100000 perm   1054 sec   (1044 perm/sec)   p_kst 1.409091e-04   p_cons 3.937609e-01   p_joint 3.754545e-04

Joint ci ratio: 1.916973e-01	ci left: 3.404849e-04	ci right 4.135148e-04	k: 417	n:1110000
Cons ci ratio: 4.616456e-03	ci left: 3.928747e-01	ci right 3.946934e-01	k: 437100	n:1110000
KS ci ratio: 3.118361e-01	ci left: 1.201833e-04	ci right 1.653759e-04	k: 157	n:1110000
FAT4   1110000 perm   1068 sec   (1040 perm/sec)   p_kst 1.414414e-04   p_cons 3.937838e-01   p_joint 3.756757e-04

Joint ci ratio: 1.905608e-01	ci left: 3.416956e-04	ci right 4.145003e-04	k: 422	n:1120000
Cons ci ratio: 4.595619e-03	ci left: 3.928976e-01	ci right 3.947083e-01	k: 441059	n:1120000
KS ci ratio: 3.098809e-01	ci left: 1.207567e-04	ci right 1.658239e-04	k: 159	n:1120000
FAT4   1120000 perm   1081 sec   (1036 perm/sec)   p_kst 1.419643e-04   p_cons 3.938027e-01   p_joint 3.767857e-04

Joint ci ratio: 1.892234e-01	ci left: 3.437291e-04	ci right 4.163940e-04	k: 428	n:1130000
Cons ci ratio: 4.574874e-03	ci left: 3.929397e-01	ci right 3.947423e-01	k: 445040	n:1130000
KS ci ratio: 3.060782e-01	ci left: 1.229544e-04	ci right 1.681689e-04	k: 163	n:1130000
FAT4   1130000 perm   1095 sec   (1032 perm/sec)   p_kst 1.442478e-04   p_cons 3.938407e-01   p_joint 3.787611e-04

Joint ci ratio: 1.881301e-01	ci left: 3.448928e-04	ci right 4.173343e-04	k: 433	n:1140000
Cons ci ratio: 4.554099e-03	ci left: 3.930134e-01	ci right 3.948082e-01	k: 449058	n:1140000
KS ci ratio: 3.051494e-01	ci left: 1.226858e-04	ci right 1.676380e-04	k: 164	n:1140000
FAT4   1140000 perm   1109 sec   (1028 perm/sec)   p_kst 1.438596e-04   p_cons 3.939105e-01   p_joint 3.798246e-04

Joint ci ratio: 1.874833e-01	ci left: 3.443797e-04	ci right 4.164365e-04	k: 436	n:1150000
Cons ci ratio: 4.534892e-03	ci left: 3.929503e-01	ci right 3.947372e-01	k: 452920	n:1150000
KS ci ratio: 3.024123e-01	ci left: 1.240288e-04	ci right 1.689871e-04	k: 167	n:1150000
FAT4   1150000 perm   1123 sec   (1024 perm/sec)   p_kst 1.452174e-04   p_cons 3.938435e-01   p_joint 3.791304e-04

Joint ci ratio: 1.872694e-01	ci left: 3.422325e-04	ci right 4.137491e-04	k: 437	n:1160000
Cons ci ratio: 4.514875e-03	ci left: 3.929995e-01	ci right 3.947787e-01	k: 456911	n:1160000
KS ci ratio: 3.015164e-01	ci left: 1.237564e-04	ci right 1.684576e-04	k: 168	n:1160000
FAT4   1160000 perm   1137 sec   (1021 perm/sec)   p_kst 1.448276e-04   p_cons 3.938888e-01   p_joint 3.767241e-04

Joint ci ratio: 1.593294e-01	ci left: 4.758941e-04	ci right 5.590895e-04	k: 604	n:1170000
Cons ci ratio: 4.495449e-03	ci left: 3.930128e-01	ci right 3.947843e-01	k: 460861	n:1170000
KS ci ratio: 2.997479e-01	ci left: 1.242791e-04	ci right 1.688557e-04	k: 170	n:1170000
FAT4   1170000 perm   1151 sec   (1017 perm/sec)   p_kst 1.452991e-04   p_cons 3.938983e-01   p_joint 5.162393e-04

Joint ci ratio: 1.585451e-01	ci left: 4.767437e-04	ci right 5.596383e-04	k: 610	n:1180000
Cons ci ratio: 4.476487e-03	ci left: 3.930030e-01	ci right 3.947670e-01	k: 464784	n:1180000
KS ci ratio: 2.988753e-01	ci left: 1.240097e-04	ci right 1.683356e-04	k: 171	n:1180000
FAT4   1180000 perm   1165 sec   (1013 perm/sec)   p_kst 1.449153e-04   p_cons 3.938847e-01   p_joint 5.169492e-04

Joint ci ratio: 1.580287e-01	ci left: 4.759656e-04	ci right 5.584298e-04	k: 614	n:1190000
Cons ci ratio: 4.458007e-03	ci left: 3.929673e-01	ci right 3.947239e-01	k: 468676	n:1190000
KS ci ratio: 2.980103e-01	ci left: 1.237451e-04	ci right 1.678241e-04	k: 172	n:1190000
FAT4   1190000 perm   1179 sec   (1010 perm/sec)   p_kst 1.445378e-04   p_cons 3.938454e-01   p_joint 5.159664e-04

Joint ci ratio: 1.573902e-01	ci left: 4.760015e-04	ci right 5.581072e-04	k: 619	n:1200000
Cons ci ratio: 4.439722e-03	ci left: 3.929357e-01	ci right 3.946849e-01	k: 472572	n:1200000
KS ci ratio: 2.946234e-01	ci left: 1.257995e-04	ci right 1.700059e-04	k: 176	n:1200000
FAT4   1200000 perm   1193 sec   (1006 perm/sec)   p_kst 1.466667e-04   p_cons 3.938100e-01   p_joint 5.158333e-04

Joint ci ratio: 1.572637e-01	ci left: 4.728614e-04	ci right 5.543538e-04	k: 620	n:1210000
Cons ci ratio: 4.420971e-03	ci left: 3.929788e-01	ci right 3.947208e-01	k: 476558	n:1210000
KS ci ratio: 2.937947e-01	ci left: 1.255253e-04	ci right 1.694882e-04	k: 177	n:1210000
FAT4   1210000 perm   1208 sec   (1002 perm/sec)   p_kst 1.462810e-04   p_cons 3.938496e-01   p_joint 5.123967e-04

Joint ci ratio: 1.568854e-01	ci left: 4.713478e-04	ci right 5.523656e-04	k: 623	n:1220000
Cons ci ratio: 4.402411e-03	ci left: 3.930263e-01	ci right 3.947611e-01	k: 480550	n:1220000
KS ci ratio: 2.929729e-01	ci left: 1.252557e-04	ci right 1.689788e-04	k: 178	n:1220000
FAT4   1220000 perm   1222 sec   (998 perm/sec)   p_kst 1.459016e-04   p_cons 3.938934e-01   p_joint 5.106557e-04

Joint ci ratio: 1.561365e-01	ci left: 4.722028e-04	ci right 5.529437e-04	k: 629	n:1230000
Cons ci ratio: 4.384665e-03	ci left: 3.930095e-01	ci right 3.947373e-01	k: 484464	n:1230000
KS ci ratio: 2.913497e-01	ci left: 1.257443e-04	ci right 1.693498e-04	k: 180	n:1230000
FAT4   1230000 perm   1237 sec   (994 perm/sec)   p_kst 1.463415e-04   p_cons 3.938732e-01   p_joint 5.113821e-04

Joint ci ratio: 1.553982e-01	ci left: 4.730448e-04	ci right 5.535116e-04	k: 635	n:1240000
Cons ci ratio: 4.366910e-03	ci left: 3.930173e-01	ci right 3.947381e-01	k: 488408	n:1240000
KS ci ratio: 2.897532e-01	ci left: 1.262256e-04	ci right 1.697142e-04	k: 182	n:1240000
FAT4   1240000 perm   1251 sec   (991 perm/sec)   p_kst 1.467742e-04   p_cons 3.938774e-01   p_joint 5.120968e-04

Joint ci ratio: 1.547909e-01	ci left: 4.731052e-04	ci right 5.532387e-04	k: 640	n:1250000
Cons ci ratio: 4.349493e-03	ci left: 3.930113e-01	ci right 3.947252e-01	k: 492335	n:1250000
KS ci ratio: 2.874068e-01	ci left: 1.274421e-04	ci right 1.709297e-04	k: 185	n:1250000
FAT4   1250000 perm   1266 sec   (987 perm/sec)   p_kst 1.480000e-04   p_cons 3.938680e-01   p_joint 5.120000e-04

Joint ci ratio: 1.540715e-01	ci left: 4.739283e-04	ci right 5.537936e-04	k: 646	n:1260000
Cons ci ratio: 4.332413e-03	ci left: 3.929912e-01	ci right 3.946982e-01	k: 496244	n:1260000
KS ci ratio: 2.866374e-01	ci left: 1.271672e-04	ci right 1.704237e-04	k: 186	n:1260000
FAT4   1260000 perm   1281 sec   (983 perm/sec)   p_kst 1.476190e-04   p_cons 3.938444e-01   p_joint 5.126984e-04

Joint ci ratio: 1.532446e-01	ci left: 4.754965e-04	ci right 5.551566e-04	k: 653	n:1270000
Cons ci ratio: 4.315090e-03	ci left: 3.930201e-01	ci right 3.947205e-01	k: 500215	n:1270000
KS ci ratio: 2.858741e-01	ci left: 1.268967e-04	ci right 1.699256e-04	k: 187	n:1270000
FAT4   1270000 perm   1296 sec   (980 perm/sec)   p_kst 1.472441e-04   p_cons 3.938701e-01   p_joint 5.141732e-04

Joint ci ratio: 1.523157e-01	ci left: 4.777928e-04	ci right 5.573081e-04	k: 661	n:1280000
Cons ci ratio: 4.297700e-03	ci left: 3.930792e-01	ci right 3.947729e-01	k: 504225	n:1280000
KS ci ratio: 2.836200e-01	ci left: 1.280817e-04	ci right 1.711087e-04	k: 190	n:1280000
FAT4   1280000 perm   1311 sec   (977 perm/sec)   p_kst 1.484375e-04   p_cons 3.939258e-01   p_joint 5.164063e-04

Joint ci ratio: 1.511778e-01	ci left: 4.815467e-04	ci right 5.610339e-04	k: 671	n:1290000
Cons ci ratio: 4.281026e-03	ci left: 3.930807e-01	ci right 3.947678e-01	k: 508162	n:1290000
KS ci ratio: 2.806957e-01	ci left: 1.299703e-04	ci right 1.731018e-04	k: 194	n:1290000
FAT4   1290000 perm   1326 sec   (973 perm/sec)   p_kst 1.503876e-04   p_cons 3.939240e-01   p_joint 5.201550e-04

Joint ci ratio: 1.507300e-01	ci left: 4.808031e-04	ci right 5.599113e-04	k: 675	n:1300000
Cons ci ratio: 4.264812e-03	ci left: 3.930522e-01	ci right 3.947329e-01	k: 512060	n:1300000
KS ci ratio: 2.799788e-01	ci left: 1.296857e-04	ci right 1.725935e-04	k: 195	n:1300000
FAT4   1300000 perm   1341 sec   (969 perm/sec)   p_kst 1.500000e-04   p_cons 3.938923e-01   p_joint 5.192308e-04

Joint ci ratio: 1.555227e-01	ci left: 4.470335e-04	ci right 5.231422e-04	k: 634	n:1310000
Cons ci ratio: 4.248672e-03	ci left: 3.930364e-01	ci right 3.947106e-01	k: 515974	n:1310000
KS ci ratio: 2.792673e-01	ci left: 1.294055e-04	ci right 1.720927e-04	k: 196	n:1310000
FAT4   1310000 perm   1356 sec   (966 perm/sec)   p_kst 1.496183e-04   p_cons 3.938733e-01   p_joint 4.839695e-04

Joint ci ratio: 1.552785e-01	ci left: 4.451030e-04	ci right 5.207531e-04	k: 636	n:1320000
Cons ci ratio: 4.232325e-03	ci left: 3.930648e-01	ci right 3.947326e-01	k: 519946	n:1320000
KS ci ratio: 2.778604e-01	ci left: 1.298345e-04	ci right 1.724097e-04	k: 198	n:1320000
FAT4   1320000 perm   1371 sec   (963 perm/sec)   p_kst 1.500000e-04   p_cons 3.938985e-01   p_joint 4.818182e-04

Joint ci ratio: 1.546727e-01	ci left: 4.453700e-04	ci right 5.207427e-04	k: 641	n:1330000
Cons ci ratio: 4.217061e-03	ci left: 3.929913e-01	ci right 3.946528e-01	k: 523783	n:1330000
KS ci ratio: 2.757892e-01	ci left: 1.309574e-04	ci right 1.735252e-04	k: 201	n:1330000
FAT4   1330000 perm   1386 sec   (959 perm/sec)   p_kst 1.511278e-04   p_cons 3.938218e-01   p_joint 4.819549e-04

Joint ci ratio: 1.539548e-01	ci left: 4.463511e-04	ci right 5.215070e-04	k: 647	n:1340000
Cons ci ratio: 4.201173e-03	ci left: 3.930084e-01	ci right 3.946637e-01	k: 527740	n:1340000
KS ci ratio: 2.751091e-01	ci left: 1.306748e-04	ci right 1.730279e-04	k: 202	n:1340000
FAT4   1340000 perm   1401 sec   (956 perm/sec)   p_kst 1.507463e-04   p_cons 3.938358e-01   p_joint 4.828358e-04

Joint ci ratio: 1.602652e-01	ci left: 4.074626e-04	ci right 4.791534e-04	k: 597	n:1350000
Cons ci ratio: 4.185561e-03	ci left: 3.930142e-01	ci right 3.946633e-01	k: 531682	n:1350000
KS ci ratio: 2.751093e-01	ci left: 1.297069e-04	ci right 1.717462e-04	k: 202	n:1350000
FAT4   1350000 perm   1417 sec   (953 perm/sec)   p_kst 1.496296e-04   p_cons 3.938385e-01   p_joint 4.422222e-04

Joint ci ratio: 1.610759e-01	ci left: 4.002320e-04	ci right 4.710414e-04	k: 591	n:1360000
Cons ci ratio: 4.169890e-03	ci left: 3.930463e-01	ci right 3.946894e-01	k: 535660	n:1360000
KS ci ratio: 2.744342e-01	ci left: 1.294378e-04	ci right 1.712692e-04	k: 203	n:1360000
FAT4   1360000 perm   1432 sec   (949 perm/sec)   p_kst 1.492647e-04   p_cons 3.938676e-01   p_joint 4.345588e-04

Joint ci ratio: 1.606694e-01	ci left: 3.994122e-04	ci right 4.698810e-04	k: 594	n:1370000
Cons ci ratio: 4.154717e-03	ci left: 3.930408e-01	ci right 3.946779e-01	k: 539587	n:1370000
KS ci ratio: 2.744344e-01	ci left: 1.284930e-04	ci right 1.700191e-04	k: 203	n:1370000
FAT4   1370000 perm   1448 sec   (946 perm/sec)   p_kst 1.481752e-04   p_cons 3.938591e-01   p_joint 4.335766e-04

Joint ci ratio: 1.601320e-01	ci left: 3.993002e-04	ci right 4.694909e-04	k: 598	n:1380000
Cons ci ratio: 4.140030e-03	ci left: 3.929984e-01	ci right 3.946295e-01	k: 543463	n:1380000
KS ci ratio: 2.730989e-01	ci left: 1.289117e-04	ci right 1.703356e-04	k: 205	n:1380000
FAT4   1380000 perm   1463 sec   (943 perm/sec)   p_kst 1.485507e-04   p_cons 3.938138e-01   p_joint 4.333333e-04

Joint ci ratio: 1.592043e-01	ci left: 4.012623e-04	ci right 4.713502e-04	k: 605	n:1390000
Cons ci ratio: 4.125205e-03	ci left: 3.929905e-01	ci right 3.946157e-01	k: 547386	n:1390000
KS ci ratio: 2.717827e-01	ci left: 1.293248e-04	ci right 1.706470e-04	k: 207	n:1390000
FAT4   1390000 perm   1479 sec   (940 perm/sec)   p_kst 1.489209e-04   p_cons 3.938029e-01   p_joint 4.352518e-04

Joint ci ratio: 1.586815e-01	ci left: 4.011396e-04	ci right 4.709541e-04	k: 609	n:1400000
Cons ci ratio: 4.110581e-03	ci left: 3.929777e-01	ci right 3.945971e-01	k: 551302	n:1400000
KS ci ratio: 2.711317e-01	ci left: 1.290667e-04	ci right 1.701909e-04	k: 208	n:1400000
FAT4   1400000 perm   1495 sec   (937 perm/sec)   p_kst 1.485714e-04   p_cons 3.937871e-01   p_joint 4.350000e-04

Joint ci ratio: 1.669649e-01	ci left: 3.581539e-04	ci right 4.240685e-04	k: 550	n:1410000
Cons ci ratio: 4.095680e-03	ci left: 3.930154e-01	ci right 3.946290e-01	k: 555289	n:1410000
KS ci ratio: 2.704855e-01	ci left: 1.288124e-04	ci right 1.697411e-04	k: 209	n:1410000
FAT4   1410000 perm   1511 sec   (933 perm/sec)   p_kst 1.482270e-04   p_cons 3.938220e-01   p_joint 3.900709e-04

Joint ci ratio: 1.316538e-01	ci left: 5.828609e-04	ci right 6.656768e-04	k: 885	n:1420000
Cons ci ratio: 4.081168e-03	ci left: 3.930258e-01	ci right 3.946338e-01	k: 559238	n:1420000
KS ci ratio: 2.692065e-01	ci left: 1.292185e-04	ci right 1.700493e-04	k: 211	n:1420000
FAT4   1420000 perm   1527 sec   (930 perm/sec)   p_kst 1.485915e-04   p_cons 3.938296e-01   p_joint 6.232394e-04

Joint ci ratio: 1.313578e-01	ci left: 5.814901e-04	ci right 6.639109e-04	k: 889	n:1430000
Cons ci ratio: 4.067114e-03	ci left: 3.930005e-01	ci right 3.946028e-01	k: 563136	n:1430000
KS ci ratio: 2.692067e-01	ci left: 1.283149e-04	ci right 1.688601e-04	k: 211	n:1430000
FAT4   1430000 perm   1543 sec   (927 perm/sec)   p_kst 1.475524e-04   p_cons 3.938014e-01   p_joint 6.216783e-04

Joint ci ratio: 1.309172e-01	ci left: 5.814819e-04	ci right 6.636037e-04	k: 895	n:1440000
Cons ci ratio: 4.053138e-03	ci left: 3.929831e-01	ci right 3.945798e-01	k: 567045	n:1440000
KS ci ratio: 2.692068e-01	ci left: 1.274238e-04	ci right 1.676875e-04	k: 211	n:1440000
FAT4   1440000 perm   1559 sec   (924 perm/sec)   p_kst 1.465278e-04   p_cons 3.937813e-01   p_joint 6.215278e-04

Joint ci ratio: 1.306261e-01	ci left: 5.801400e-04	ci right 6.618760e-04	k: 899	n:1450000
Cons ci ratio: 4.039253e-03	ci left: 3.929722e-01	ci right 3.945634e-01	k: 570963	n:1450000
KS ci ratio: 2.685742e-01	ci left: 1.271881e-04	ci right 1.672671e-04	k: 212	n:1450000
FAT4   1450000 perm   1575 sec   (921 perm/sec)   p_kst 1.462069e-04   p_cons 3.937676e-01   p_joint 6.200000e-04

Joint ci ratio: 1.301928e-01	ci left: 5.801420e-04	ci right 6.615862e-04	k: 905	n:1460000
Cons ci ratio: 4.025164e-03	ci left: 3.930025e-01	ci right 3.945883e-01	k: 574941	n:1460000
KS ci ratio: 2.685743e-01	ci left: 1.263170e-04	ci right 1.661214e-04	k: 212	n:1460000
FAT4   1460000 perm   1591 sec   (917 perm/sec)   p_kst 1.452055e-04   p_cons 3.937952e-01   p_joint 6.198630e-04

Joint ci ratio: 1.293388e-01	ci left: 5.840938e-04	ci right 6.655136e-04	k: 917	n:1470000
Cons ci ratio: 4.011832e-03	ci left: 3.929597e-01	ci right 3.945400e-01	k: 578812	n:1470000
KS ci ratio: 2.667025e-01	ci left: 1.273616e-04	ci right 1.671687e-04	k: 215	n:1470000
FAT4   1470000 perm   1608 sec   (914 perm/sec)   p_kst 1.462585e-04   p_cons 3.937497e-01   p_joint 6.238095e-04

Joint ci ratio: 1.340224e-01	ci left: 5.389806e-04	ci right 6.170493e-04	k: 854	n:1480000
Cons ci ratio: 3.997941e-03	ci left: 3.929999e-01	ci right 3.945749e-01	k: 582805	n:1480000
KS ci ratio: 2.660873e-01	ci left: 1.271316e-04	ci right 1.667599e-04	k: 216	n:1480000
FAT4   1480000 perm   1625 sec   (911 perm/sec)   p_kst 1.459459e-04   p_cons 3.937872e-01   p_joint 5.770270e-04

Joint ci ratio: 1.336323e-01	ci left: 5.386066e-04	ci right 6.163761e-04	k: 859	n:1490000
Cons ci ratio: 3.984469e-03	ci left: 3.930066e-01	ci right 3.945763e-01	k: 586749	n:1490000
KS ci ratio: 2.648695e-01	ci left: 1.275313e-04	ci right 1.670721e-04	k: 218	n:1490000
FAT4   1490000 perm   1641 sec   (908 perm/sec)   p_kst 1.463087e-04   p_cons 3.937913e-01   p_joint 5.765101e-04

Joint ci ratio: 1.367715e-01	ci left: 5.098947e-04	ci right 5.853887e-04	k: 820	n:1500000
Cons ci ratio: 3.971164e-03	ci left: 3.930093e-01	ci right 3.945738e-01	k: 590687	n:1500000
KS ci ratio: 2.630736e-01	ci left: 1.285488e-04	ci right 1.680903e-04	k: 221	n:1500000
FAT4   1500000 perm   1658 sec   (905 perm/sec)   p_kst 1.473333e-04   p_cons 3.937913e-01   p_joint 5.466667e-04

Joint ci ratio: 1.361098e-01	ci left: 5.116351e-04	ci right 5.869907e-04	k: 828	n:1510000
Cons ci ratio: 3.958393e-03	ci left: 3.929636e-01	ci right 3.945229e-01	k: 594552	n:1510000
KS ci ratio: 2.624831e-01	ci left: 1.283161e-04	ci right 1.676829e-04	k: 222	n:1510000
FAT4   1510000 perm   1674 sec   (902 perm/sec)   p_kst 1.470199e-04   p_cons 3.937430e-01   p_joint 5.483444e-04

Joint ci ratio: 1.357012e-01	ci left: 5.114467e-04	ci right 5.865302e-04	k: 833	n:1520000
Cons ci ratio: 3.945261e-03	ci left: 3.929771e-01	ci right 3.945312e-01	k: 598506	n:1520000
KS ci ratio: 2.618966e-01	ci left: 1.280866e-04	ci right 1.672808e-04	k: 223	n:1520000
FAT4   1520000 perm   1691 sec   (899 perm/sec)   p_kst 1.467105e-04   p_cons 3.937539e-01   p_joint 5.480263e-04

Joint ci ratio: 1.352157e-01	ci left: 5.118926e-04	ci right 5.867510e-04	k: 839	n:1530000
Cons ci ratio: 3.932054e-03	ci left: 3.930152e-01	ci right 3.945643e-01	k: 602498	n:1530000
KS ci ratio: 2.607352e-01	ci left: 1.284710e-04	ci right 1.675801e-04	k: 225	n:1530000
FAT4   1530000 perm   1708 sec   (896 perm/sec)   p_kst 1.470588e-04   p_cons 3.937895e-01   p_joint 5.483660e-04

Joint ci ratio: 1.347353e-01	ci left: 5.123332e-04	ci right 5.869685e-04	k: 845	n:1540000
Cons ci ratio: 3.919410e-03	ci left: 3.930003e-01	ci right 3.945443e-01	k: 606409	n:1540000
KS ci ratio: 2.601603e-01	ci left: 1.282437e-04	ci right 1.671835e-04	k: 226	n:1540000
FAT4   1540000 perm   1725 sec   (893 perm/sec)   p_kst 1.467532e-04   p_cons 3.937721e-01   p_joint 5.487013e-04

Joint ci ratio: 1.344180e-01	ci left: 5.115216e-04	ci right 5.858491e-04	k: 849	n:1550000
Cons ci ratio: 3.906818e-03	ci left: 3.929939e-01	ci right 3.945329e-01	k: 610333	n:1550000
KS ci ratio: 2.595892e-01	ci left: 1.280195e-04	ci right 1.667920e-04	k: 227	n:1550000
FAT4   1550000 perm   1742 sec   (890 perm/sec)   p_kst 1.464516e-04   p_cons 3.937632e-01   p_joint 5.477419e-04

Joint ci ratio: 1.342603e-01	ci left: 5.094815e-04	ci right 5.834188e-04	k: 851	n:1560000
Cons ci ratio: 3.894332e-03	ci left: 3.929896e-01	ci right 3.945236e-01	k: 614260	n:1560000
KS ci ratio: 2.584580e-01	ci left: 1.283977e-04	ci right 1.670880e-04	k: 229	n:1560000
FAT4   1560000 perm   1759 sec   (887 perm/sec)   p_kst 1.467949e-04   p_cons 3.937564e-01   p_joint 5.455128e-04

Joint ci ratio: 1.337900e-01	ci left: 5.099299e-04	ci right 5.836525e-04	k: 857	n:1570000
Cons ci ratio: 3.882027e-03	ci left: 3.929777e-01	ci right 3.945068e-01	k: 618175	n:1570000
KS ci ratio: 2.562392e-01	ci left: 1.299633e-04	ci right 1.687354e-04	k: 233	n:1570000
FAT4   1570000 perm   1776 sec   (884 perm/sec)   p_kst 1.484076e-04   p_cons 3.937420e-01   p_joint 5.458599e-04

Joint ci ratio: 1.330936e-01	ci left: 5.122086e-04	ci right 5.858447e-04	k: 866	n:1580000
Cons ci ratio: 3.869730e-03	ci left: 3.929792e-01	ci right 3.945035e-01	k: 622111	n:1580000
KS ci ratio: 2.546122e-01	ci left: 1.309179e-04	ci right 1.696875e-04	k: 236	n:1580000
FAT4   1580000 perm   1793 sec   (881 perm/sec)   p_kst 1.493671e-04   p_cons 3.937411e-01   p_joint 5.481013e-04

Joint ci ratio: 1.327115e-01	ci left: 5.120273e-04	ci right 5.854093e-04	k: 871	n:1590000
Cons ci ratio: 3.857844e-03	ci left: 3.929442e-01	ci right 3.944637e-01	k: 625989	n:1590000
KS ci ratio: 2.546123e-01	ci left: 1.300946e-04	ci right 1.686203e-04	k: 236	n:1590000
FAT4   1590000 perm   1810 sec   (878 perm/sec)   p_kst 1.484277e-04   p_cons 3.937038e-01   p_joint 5.477987e-04

Joint ci ratio: 1.322572e-01	ci left: 5.124528e-04	ci right 5.856247e-04	k: 877	n:1600000
Cons ci ratio: 3.845865e-03	ci left: 3.929347e-01	ci right 3.944494e-01	k: 629907	n:1600000
KS ci ratio: 2.540769e-01	ci left: 1.298666e-04	ci right 1.682312e-04	k: 237	n:1600000
FAT4   1600000 perm   1828 sec   (875 perm/sec)   p_kst 1.481250e-04   p_cons 3.936919e-01   p_joint 5.481250e-04

Joint ci ratio: 1.314362e-01	ci left: 5.158769e-04	ci right 5.890447e-04	k: 888	n:1610000
Cons ci ratio: 3.833817e-03	ci left: 3.929477e-01	ci right 3.944577e-01	k: 633861	n:1610000
KS ci ratio: 2.530160e-01	ci left: 1.302233e-04	ci right 1.685073e-04	k: 239	n:1610000
FAT4   1610000 perm   1845 sec   (873 perm/sec)   p_kst 1.484472e-04   p_cons 3.937025e-01   p_joint 5.515528e-04

Joint ci ratio: 1.311416e-01	ci left: 5.150805e-04	ci right 5.879589e-04	k: 892	n:1620000
Cons ci ratio: 3.821912e-03	ci left: 3.929568e-01	ci right 3.944621e-01	k: 637809	n:1620000
KS ci ratio: 2.530161e-01	ci left: 1.294194e-04	ci right 1.674671e-04	k: 239	n:1620000
FAT4   1620000 perm   1862 sec   (870 perm/sec)   p_kst 1.475309e-04   p_cons 3.937093e-01   p_joint 5.506173e-04

Joint ci ratio: 1.305580e-01	ci left: 5.166678e-04	ci right 5.894203e-04	k: 900	n:1630000
Cons ci ratio: 3.810308e-03	ci left: 3.929419e-01	ci right 3.944426e-01	k: 641718	n:1630000
KS ci ratio: 2.514493e-01	ci left: 1.303496e-04	ci right 1.683963e-04	k: 242	n:1630000
FAT4   1630000 perm   1880 sec   (867 perm/sec)   p_kst 1.484663e-04   p_cons 3.936920e-01   p_joint 5.521472e-04

Joint ci ratio: 1.318083e-01	ci left: 5.034915e-04	ci right 5.751207e-04	k: 883	n:1640000
Cons ci ratio: 3.798639e-03	ci left: 3.929485e-01	ci right 3.944446e-01	k: 645662	n:1640000
KS ci ratio: 2.504208e-01	ci left: 1.306976e-04	ci right 1.686655e-04	k: 244	n:1640000
FAT4   1640000 perm   1897 sec   (864 perm/sec)   p_kst 1.487805e-04   p_cons 3.936963e-01   p_joint 5.384146e-04

Joint ci ratio: 1.315111e-01	ci left: 5.027844e-04	ci right 5.741391e-04	k: 887	n:1650000
Cons ci ratio: 3.786937e-03	ci left: 3.929726e-01	ci right 3.944642e-01	k: 649635	n:1650000
KS ci ratio: 2.499114e-01	ci left: 1.304736e-04	ci right 1.682873e-04	k: 245	n:1650000
FAT4   1650000 perm   1915 sec   (862 perm/sec)   p_kst 1.484848e-04   p_cons 3.937182e-01   p_joint 5.375758e-04

Joint ci ratio: 1.309226e-01	ci left: 5.044167e-04	ci right 5.756578e-04	k: 895	n:1660000
Cons ci ratio: 3.775577e-03	ci left: 3.929669e-01	ci right 3.944540e-01	k: 653559	n:1660000
KS ci ratio: 2.494050e-01	ci left: 1.302523e-04	ci right 1.679135e-04	k: 246	n:1660000
FAT4   1660000 perm   1933 sec   (859 perm/sec)   p_kst 1.481928e-04   p_cons 3.937102e-01   p_joint 5.391566e-04

Joint ci ratio: 1.275490e-01	ci left: 5.292101e-04	ci right 6.018813e-04	k: 943	n:1670000
Cons ci ratio: 3.764709e-03	ci left: 3.929116e-01	ci right 3.943942e-01	k: 657400	n:1670000
KS ci ratio: 2.479039e-01	ci left: 1.311569e-04	ci right 1.688162e-04	k: 249	n:1670000
FAT4   1670000 perm   1951 sec   (856 perm/sec)   p_kst 1.491018e-04   p_cons 3.936527e-01   p_joint 5.646707e-04

Joint ci ratio: 1.271456e-01	ci left: 5.295177e-04	ci right 6.019839e-04	k: 949	n:1680000
Cons ci ratio: 3.753116e-03	ci left: 3.929611e-01	ci right 3.944393e-01	k: 661416	n:1680000
KS ci ratio: 2.474096e-01	ci left: 1.309345e-04	ci right 1.684434e-04	k: 250	n:1680000
FAT4   1680000 perm   1969 sec   (853 perm/sec)   p_kst 1.488095e-04   p_cons 3.937000e-01   p_joint 5.648810e-04

Joint ci ratio: 1.272799e-01	ci left: 5.252386e-04	ci right 5.972008e-04	k: 947	n:1690000
Cons ci ratio: 3.742288e-03	ci left: 3.929260e-01	ci right 3.943998e-01	k: 665290	n:1690000
KS ci ratio: 2.469183e-01	ci left: 1.307148e-04	ci right 1.680750e-04	k: 251	n:1690000
FAT4   1690000 perm   1987 sec   (850 perm/sec)   p_kst 1.485207e-04   p_cons 3.936627e-01   p_joint 5.603550e-04

Joint ci ratio: 1.268790e-01	ci left: 5.255662e-04	ci right 5.973294e-04	k: 953	n:1700000
Cons ci ratio: 3.731001e-03	ci left: 3.929619e-01	ci right 3.944314e-01	k: 669284	n:1700000
KS ci ratio: 2.464299e-01	ci left: 1.304977e-04	ci right 1.677108e-04	k: 252	n:1700000
FAT4   1700000 perm   2005 sec   (848 perm/sec)   p_kst 1.482353e-04   p_cons 3.936965e-01   p_joint 5.605882e-04

Joint ci ratio: 1.264160e-01	ci left: 5.264566e-04	ci right 5.980595e-04	k: 960	n:1710000
Cons ci ratio: 3.720140e-03	ci left: 3.929559e-01	ci right 3.944211e-01	k: 673207	n:1710000
KS ci ratio: 2.454615e-01	ci left: 1.308321e-04	ci right 1.679716e-04	k: 254	n:1710000
FAT4   1710000 perm   2023 sec   (845 perm/sec)   p_kst 1.485380e-04   p_cons 3.936883e-01   p_joint 5.614035e-04

Joint ci ratio: 1.258930e-01	ci left: 5.279002e-04	ci right 5.993802e-04	k: 968	n:1720000
Cons ci ratio: 3.709228e-03	ci left: 3.929686e-01	ci right 3.944295e-01	k: 677162	n:1720000
KS ci ratio: 2.435585e-01	ci left: 1.322546e-04	ci right 1.694628e-04	k: 258	n:1720000
FAT4   1720000 perm   2041 sec   (843 perm/sec)   p_kst 1.500000e-04   p_cons 3.936988e-01   p_joint 5.627907e-04

Joint ci ratio: 1.256987e-01	ci left: 5.265283e-04	ci right 5.977043e-04	k: 971	n:1730000
Cons ci ratio: 3.698407e-03	ci left: 3.929817e-01	ci right 3.944383e-01	k: 681118	n:1730000
KS ci ratio: 2.430897e-01	ci left: 1.320329e-04	ci right 1.690965e-04	k: 259	n:1730000
FAT4   1730000 perm   2060 sec   (840 perm/sec)   p_kst 1.497110e-04   p_cons 3.937098e-01   p_joint 5.612717e-04

Joint ci ratio: 1.255053e-01	ci left: 5.251722e-04	ci right 5.960475e-04	k: 974	n:1740000
Cons ci ratio: 3.687862e-03	ci left: 3.929711e-01	ci right 3.944235e-01	k: 685033	n:1740000
KS ci ratio: 2.430898e-01	ci left: 1.312741e-04	ci right 1.681246e-04	k: 259	n:1740000
FAT4   1740000 perm   2078 sec   (837 perm/sec)   p_kst 1.488506e-04   p_cons 3.936971e-01   p_joint 5.597701e-04

Joint ci ratio: 1.248030e-01	ci left: 5.282602e-04	ci right 5.991238e-04	k: 985	n:1750000
Cons ci ratio: 3.677376e-03	ci left: 3.929646e-01	ci right 3.944129e-01	k: 688955	n:1750000
KS ci ratio: 2.421602e-01	ci left: 1.315973e-04	ci right 1.683761e-04	k: 261	n:1750000
FAT4   1750000 perm   2097 sec   (835 perm/sec)   p_kst 1.491429e-04   p_cons 3.936886e-01   p_joint 5.628571e-04

Joint ci ratio: 1.246137e-01	ci left: 5.269101e-04	ci right 5.974774e-04	k: 988	n:1760000
Cons ci ratio: 3.666508e-03	ci left: 3.930196e-01	ci right 3.944638e-01	k: 692985	n:1760000
KS ci ratio: 2.421603e-01	ci left: 1.308496e-04	ci right 1.674195e-04	k: 261	n:1760000
FAT4   1760000 perm   2115 sec   (832 perm/sec)   p_kst 1.482955e-04   p_cons 3.937415e-01   p_joint 5.613636e-04

Joint ci ratio: 1.250575e-01	ci left: 5.201018e-04	ci right 5.900238e-04	k: 981	n:1770000
Cons ci ratio: 3.656159e-03	ci left: 3.930185e-01	ci right 3.944586e-01	k: 696917	n:1770000
KS ci ratio: 2.416995e-01	ci left: 1.306411e-04	ci right 1.670727e-04	k: 262	n:1770000
FAT4   1770000 perm   2133 sec   (830 perm/sec)   p_kst 1.480226e-04   p_cons 3.937384e-01   p_joint 5.542373e-04

Joint ci ratio: 1.246141e-01	ci left: 5.209897e-04	ci right 5.907643e-04	k: 988	n:1780000
Cons ci ratio: 3.645996e-03	ci left: 3.930046e-01	ci right 3.944407e-01	k: 700826	n:1780000
KS ci ratio: 2.407857e-01	ci left: 1.309628e-04	ci right 1.673255e-04	k: 264	n:1780000
FAT4   1780000 perm   2152 sec   (827 perm/sec)   p_kst 1.483146e-04   p_cons 3.937225e-01   p_joint 5.550562e-04

Joint ci ratio: 1.244884e-01	ci left: 5.191616e-04	ci right 5.886161e-04	k: 990	n:1790000
Cons ci ratio: 3.635926e-03	ci left: 3.929897e-01	ci right 3.944218e-01	k: 704733	n:1790000
KS ci ratio: 2.407858e-01	ci left: 1.302312e-04	ci right 1.663907e-04	k: 264	n:1790000
FAT4   1790000 perm   2171 sec   (825 perm/sec)   p_kst 1.474860e-04   p_cons 3.937056e-01   p_joint 5.530726e-04

Joint ci ratio: 1.243005e-01	ci left: 5.178921e-04	ci right 5.870646e-04	k: 993	n:1800000
Cons ci ratio: 3.625783e-03	ci left: 3.929956e-01	ci right 3.944236e-01	k: 708677	n:1800000
KS ci ratio: 2.403328e-01	ci left: 1.300297e-04	ci right 1.660553e-04	k: 265	n:1800000
FAT4   1800000 perm   2189 sec   (822 perm/sec)   p_kst 1.472222e-04   p_cons 3.937094e-01   p_joint 5.516667e-04

Joint ci ratio: 1.240512e-01	ci left: 5.171721e-04	ci right 5.860997e-04	k: 997	n:1810000
Cons ci ratio: 3.616080e-03	ci left: 3.929544e-01	ci right 3.943785e-01	k: 712536	n:1810000
KS ci ratio: 2.398823e-01	ci left: 1.298306e-04	ci right 1.657236e-04	k: 266	n:1810000
FAT4   1810000 perm   2209 sec   (820 perm/sec)   p_kst 1.469613e-04   p_cons 3.936663e-01   p_joint 5.508287e-04

Joint ci ratio: 1.248044e-01	ci left: 5.079422e-04	ci right 5.760810e-04	k: 985	n:1820000
Cons ci ratio: 3.606193e-03	ci left: 3.929483e-01	ci right 3.943685e-01	k: 716458	n:1820000
KS ci ratio: 2.398824e-01	ci left: 1.291172e-04	ci right 1.648130e-04	k: 266	n:1820000
FAT4   1820000 perm   2227 sec   (817 perm/sec)   p_kst 1.461538e-04   p_cons 3.936582e-01   p_joint 5.412088e-04

Joint ci ratio: 1.243637e-01	ci left: 5.088725e-04	ci right 5.768773e-04	k: 992	n:1830000
Cons ci ratio: 3.596267e-03	ci left: 3.929582e-01	ci right 3.943744e-01	k: 720409	n:1830000
KS ci ratio: 2.389890e-01	ci left: 1.294390e-04	ci right 1.650707e-04	k: 268	n:1830000
FAT4   1830000 perm   2246 sec   (815 perm/sec)   p_kst 1.464481e-04   p_cons 3.936661e-01   p_joint 5.420765e-04

Joint ci ratio: 1.240517e-01	ci left: 5.087398e-04	ci right 5.765439e-04	k: 997	n:1840000
Cons ci ratio: 3.586464e-03	ci left: 3.929624e-01	ci right 3.943748e-01	k: 724350	n:1840000
KS ci ratio: 2.381054e-01	ci left: 1.297575e-04	ci right 1.653254e-04	k: 270	n:1840000
FAT4   1840000 perm   2266 sec   (812 perm/sec)   p_kst 1.467391e-04   p_cons 3.936685e-01   p_joint 5.418478e-04

Joint ci ratio: 1.258955e-01	ci left: 4.908040e-04	ci right 5.572623e-04	k: 968	n:1850000
Cons ci ratio: 3.576635e-03	ci left: 3.929807e-01	ci right 3.943893e-01	k: 728317	n:1850000
KS ci ratio: 2.376674e-01	ci left: 1.295644e-04	ci right 1.650044e-04	k: 271	n:1850000
FAT4   1850000 perm   2285 sec   (810 perm/sec)   p_kst 1.464865e-04   p_cons 3.936849e-01   p_joint 5.232432e-04

Joint ci ratio: 1.254432e-01	ci left: 4.918104e-04	ci right 5.581479e-04	k: 975	n:1860000
Cons ci ratio: 3.567035e-03	ci left: 3.929790e-01	ci right 3.943837e-01	k: 732247	n:1860000
KS ci ratio: 2.372317e-01	ci left: 1.293735e-04	ci right 1.646869e-04	k: 272	n:1860000
FAT4   1860000 perm   2304 sec   (807 perm/sec)   p_kst 1.462366e-04   p_cons 3.936812e-01   p_joint 5.241935e-04

Joint ci ratio: 1.249321e-01	ci left: 4.933245e-04	ci right 5.595751e-04	k: 983	n:1870000
Cons ci ratio: 3.557276e-03	ci left: 3.930087e-01	ci right 3.944098e-01	k: 736236	n:1870000
KS ci ratio: 2.355125e-01	ci left: 1.306941e-04	ci right 1.660717e-04	k: 276	n:1870000
FAT4   1870000 perm   2324 sec   (805 perm/sec)   p_kst 1.475936e-04   p_cons 3.937091e-01   p_joint 5.256684e-04

Joint ci ratio: 1.252511e-01	ci left: 4.881240e-04	ci right 5.538560e-04	k: 978	n:1880000
Cons ci ratio: 3.547803e-03	ci left: 3.930106e-01	ci right 3.944079e-01	k: 740173	n:1880000
KS ci ratio: 2.350885e-01	ci left: 1.304994e-04	ci right 1.657515e-04	k: 277	n:1880000
FAT4   1880000 perm   2344 sec   (802 perm/sec)   p_kst 1.473404e-04   p_cons 3.937090e-01   p_joint 5.202128e-04

Joint ci ratio: 1.251873e-01	ci left: 4.860538e-04	ci right 5.514713e-04	k: 979	n:1890000
Cons ci ratio: 3.538606e-03	ci left: 3.929854e-01	ci right 3.943790e-01	k: 744059	n:1890000
KS ci ratio: 2.350886e-01	ci left: 1.298090e-04	ci right 1.648745e-04	k: 277	n:1890000
FAT4   1890000 perm   2363 sec   (800 perm/sec)   p_kst 1.465608e-04   p_cons 3.936820e-01   p_joint 5.179894e-04

Joint ci ratio: 1.248692e-01	ci left: 4.860449e-04	ci right 5.512826e-04	k: 984	n:1900000
Cons ci ratio: 3.529183e-03	ci left: 3.930005e-01	ci right 3.943904e-01	k: 748021	n:1900000
KS ci ratio: 2.346670e-01	ci left: 1.296211e-04	ci right 1.645640e-04	k: 278	n:1900000
FAT4   1900000 perm   2383 sec   (797 perm/sec)   p_kst 1.463158e-04   p_cons 3.936953e-01   p_joint 5.178947e-04

Joint ci ratio: 1.246795e-01	ci left: 4.850218e-04	ci right 5.500160e-04	k: 987	n:1910000
Cons ci ratio: 3.520129e-03	ci left: 3.929756e-01	ci right 3.943619e-01	k: 751907	n:1910000
KS ci ratio: 2.346671e-01	ci left: 1.289424e-04	ci right 1.637024e-04	k: 278	n:1910000
FAT4   1910000 perm   2403 sec   (795 perm/sec)   p_kst 1.455497e-04   p_cons 3.936686e-01   p_joint 5.167539e-04

Joint ci ratio: 1.243026e-01	ci left: 4.855234e-04	ci right 5.503736e-04	k: 993	n:1920000
Cons ci ratio: 3.511455e-03	ci left: 3.929089e-01	ci right 3.942915e-01	k: 755712	n:1920000
KS ci ratio: 2.342477e-01	ci left: 1.287611e-04	ci right 1.634012e-04	k: 279	n:1920000
FAT4   1920000 perm   2423 sec   (793 perm/sec)   p_kst 1.453125e-04   p_cons 3.936000e-01   p_joint 5.171875e-04

Joint ci ratio: 1.247430e-01	ci left: 4.794936e-04	ci right 5.437822e-04	k: 986	n:1930000
Cons ci ratio: 3.502794e-03	ci left: 3.928495e-01	ci right 3.942285e-01	k: 759530	n:1930000
KS ci ratio: 2.342478e-01	ci left: 1.280939e-04	ci right 1.625546e-04	k: 279	n:1930000
FAT4   1930000 perm   2442 sec   (790 perm/sec)   p_kst 1.445596e-04   p_cons 3.935389e-01   p_joint 5.108808e-04

Joint ci ratio: 1.251881e-01	ci left: 4.735265e-04	ci right 5.372583e-04	k: 979	n:1940000
Cons ci ratio: 3.493779e-03	ci left: 3.928480e-01	ci right 3.942234e-01	k: 763459	n:1940000
KS ci ratio: 2.334156e-01	ci left: 1.284042e-04	ci right 1.628079e-04	k: 281	n:1940000
FAT4   1940000 perm   2462 sec   (788 perm/sec)   p_kst 1.448454e-04   p_cons 3.935356e-01   p_joint 5.046392e-04

Joint ci ratio: 1.249970e-01	ci left: 4.725884e-04	ci right 5.360898e-04	k: 982	n:1950000
Cons ci ratio: 3.484646e-03	ci left: 3.928722e-01	ci right 3.942441e-01	k: 767438	n:1950000
KS ci ratio: 2.330028e-01	ci left: 1.282286e-04	ci right 1.625157e-04	k: 282	n:1950000
FAT4   1950000 perm   2482 sec   (786 perm/sec)   p_kst 1.446154e-04   p_cons 3.935579e-01   p_joint 5.035897e-04

Joint ci ratio: 1.241784e-01	ci left: 4.766033e-04	ci right 5.401938e-04	k: 995	n:1960000
Cons ci ratio: 3.475435e-03	ci left: 3.929165e-01	ci right 3.942849e-01	k: 771457	n:1960000
KS ci ratio: 2.309712e-01	ci left: 1.299771e-04	ci right 1.643855e-04	k: 287	n:1960000
FAT4   1960000 perm   2502 sec   (783 perm/sec)   p_kst 1.464286e-04   p_cons 3.936005e-01   p_joint 5.076531e-04

Joint ci ratio: 1.238678e-01	ci left: 4.766433e-04	ci right 5.400685e-04	k: 1000	n:1970000
Cons ci ratio: 3.466633e-03	ci left: 3.929141e-01	ci right 3.942791e-01	k: 775385	n:1970000
KS ci ratio: 2.309713e-01	ci left: 1.293174e-04	ci right 1.635511e-04	k: 287	n:1970000
FAT4   1970000 perm   2522 sec   (781 perm/sec)   p_kst 1.456853e-04   p_cons 3.935964e-01   p_joint 5.076142e-04

Joint ci ratio: 1.241164e-01	ci left: 4.722784e-04	ci right 5.352581e-04	k: 996	n:1980000
Cons ci ratio: 3.457743e-03	ci left: 3.929330e-01	ci right 3.942945e-01	k: 779355	n:1980000
KS ci ratio: 2.305713e-01	ci left: 1.291401e-04	ci right 1.632593e-04	k: 288	n:1980000
FAT4   1980000 perm   2543 sec   (779 perm/sec)   p_kst 1.454545e-04   p_cons 3.936136e-01   p_joint 5.030303e-04

Joint ci ratio: 1.246808e-01	ci left: 4.655232e-04	ci right 5.279052e-04	k: 987	n:1990000
Cons ci ratio: 3.449201e-03	ci left: 3.929131e-01	ci right 3.942711e-01	k: 783248	n:1990000
KS ci ratio: 2.289919e-01	ci left: 1.303855e-04	ci right 1.645644e-04	k: 292	n:1990000
FAT4   1990000 perm   2563 sec   (776 perm/sec)   p_kst 1.467337e-04   p_cons 3.935920e-01   p_joint 4.959799e-04

Joint ci ratio: 1.241790e-01	ci left: 4.670711e-04	ci right 5.293901e-04	k: 995	n:2000000
Cons ci ratio: 3.440379e-03	ci left: 3.929408e-01	ci right 3.942955e-01	k: 787236	n:2000000
KS ci ratio: 2.282143e-01	ci left: 1.306763e-04	ci right 1.647987e-04	k: 294	n:2000000
FAT4   2000000 perm   2583 sec   (774 perm/sec)   p_kst 1.470000e-04   p_cons 3.936180e-01   p_joint 4.975000e-04

Joint ci ratio: 1.239304e-01	ci left: 4.666756e-04	ci right 5.288081e-04	k: 999	n:2010000
Cons ci ratio: 3.431943e-03	ci left: 3.929240e-01	ci right 3.942753e-01	k: 791135	n:2010000
KS ci ratio: 2.278285e-01	ci left: 1.304953e-04	ci right 1.645047e-04	k: 295	n:2010000
FAT4   2010000 perm   2604 sec   (772 perm/sec)   p_kst 1.467662e-04   p_cons 3.935995e-01   p_joint 4.970149e-04

Joint ci ratio: 1.249346e-01	ci left: 4.566910e-04	ci right 5.180232e-04	k: 983	n:2020000
Cons ci ratio: 3.423488e-03	ci left: 3.929188e-01	ci right 3.942667e-01	k: 795057	n:2020000
KS ci ratio: 2.274447e-01	ci left: 1.303161e-04	ci right 1.642136e-04	k: 296	n:2020000
FAT4   2020000 perm   2624 sec   (770 perm/sec)   p_kst 1.465347e-04   p_cons 3.935926e-01   p_joint 4.866337e-04

Joint ci ratio: 1.246183e-01	ci left: 4.568274e-04	ci right 5.180112e-04	k: 988	n:2030000
Cons ci ratio: 3.415196e-03	ci left: 3.928993e-01	ci right 3.942439e-01	k: 798950	n:2030000
KS ci ratio: 2.266827e-01	ci left: 1.306033e-04	ci right 1.644458e-04	k: 298	n:2030000
FAT4   2030000 perm   2645 sec   (768 perm/sec)   p_kst 1.467980e-04   p_cons 3.935714e-01   p_joint 4.866995e-04

Joint ci ratio: 1.253818e-01	ci left: 4.488895e-04	ci right 5.094059e-04	k: 976	n:2040000
Cons ci ratio: 3.406472e-03	ci left: 3.929491e-01	ci right 3.942904e-01	k: 802984	n:2040000
KS ci ratio: 2.255539e-01	ci left: 1.313504e-04	ci right 1.651934e-04	k: 301	n:2040000
FAT4   2040000 perm   2666 sec   (765 perm/sec)   p_kst 1.475490e-04   p_cons 3.936196e-01   p_joint 4.784314e-04

Joint ci ratio: 1.250622e-01	ci left: 4.490625e-04	ci right 5.094364e-04	k: 981	n:2050000
Cons ci ratio: 3.397789e-03	ci left: 3.930018e-01	ci right 3.943399e-01	k: 807025	n:2050000
KS ci ratio: 2.244418e-01	ci left: 1.320906e-04	ci right 1.659334e-04	k: 304	n:2050000
FAT4   2050000 perm   2687 sec   (763 perm/sec)   p_kst 1.482927e-04   p_cons 3.936707e-01   p_joint 4.785366e-04

Joint ci ratio: 1.246819e-01	ci left: 4.497042e-04	ci right 5.099669e-04	k: 987	n:2060000
Cons ci ratio: 3.389810e-03	ci left: 3.929643e-01	ci right 3.942991e-01	k: 810881	n:2060000
KS ci ratio: 2.244419e-01	ci left: 1.314494e-04	ci right 1.651279e-04	k: 304	n:2060000
FAT4   2060000 perm   2708 sec   (761 perm/sec)   p_kst 1.475728e-04   p_cons 3.936316e-01   p_joint 4.791262e-04

Joint ci ratio: 1.244303e-01	ci left: 4.494039e-04	ci right 5.094959e-04	k: 991	n:2070000
Cons ci ratio: 3.381275e-03	ci left: 3.930136e-01	ci right 3.943452e-01	k: 814916	n:2070000
KS ci ratio: 2.237096e-01	ci left: 1.317263e-04	ci right 1.653505e-04	k: 306	n:2070000
FAT4   2070000 perm   2729 sec   (759 perm/sec)   p_kst 1.478261e-04   p_cons 3.936792e-01   p_joint 4.787440e-04

Joint ci ratio: 1.246191e-01	ci left: 4.458458e-04	ci right 5.055592e-04	k: 988	n:2080000
Cons ci ratio: 3.373044e-03	ci left: 3.930283e-01	ci right 3.943567e-01	k: 818880	n:2080000
KS ci ratio: 2.233461e-01	ci left: 1.315469e-04	ci right 1.650632e-04	k: 307	n:2080000
FAT4   2080000 perm   2749 sec   (757 perm/sec)   p_kst 1.475962e-04   p_cons 3.936923e-01   p_joint 4.750000e-04

Joint ci ratio: 1.114224e-01	ci left: 5.588826e-04	ci right 6.252890e-04	k: 1236	n:2090000
Cons ci ratio: 3.365056e-03	ci left: 3.930170e-01	ci right 3.943422e-01	k: 822790	n:2090000
KS ci ratio: 2.226245e-01	ci left: 1.318210e-04	ci right 1.652837e-04	k: 309	n:2090000
FAT4   2090000 perm   2771 sec   (754 perm/sec)   p_kst 1.478469e-04   p_cons 3.936794e-01   p_joint 5.913876e-04

Joint ci ratio: 1.112876e-01	ci left: 5.576100e-04	ci right 6.237798e-04	k: 1239	n:2100000
Cons ci ratio: 3.356943e-03	ci left: 3.930315e-01	ci right 3.943536e-01	k: 826754	n:2100000
KS ci ratio: 2.219098e-01	ci left: 1.320926e-04	ci right 1.655019e-04	k: 311	n:2100000
FAT4   2100000 perm   2792 sec   (752 perm/sec)   p_kst 1.480952e-04   p_cons 3.936924e-01   p_joint 5.900000e-04

Joint ci ratio: 1.110640e-01	ci left: 5.572711e-04	ci right 6.232590e-04	k: 1244	n:2110000
Cons ci ratio: 3.348866e-03	ci left: 3.930492e-01	ci right 3.943681e-01	k: 830725	n:2110000
KS ci ratio: 2.219098e-01	ci left: 1.314666e-04	ci right 1.647176e-04	k: 311	n:2110000
FAT4   2110000 perm   2814 sec   (750 perm/sec)   p_kst 1.473934e-04   p_cons 3.937085e-01   p_joint 5.895735e-04

Joint ci ratio: 1.107973e-01	ci left: 5.573941e-04	ci right 6.232278e-04	k: 1250	n:2120000
Cons ci ratio: 3.340978e-03	ci left: 3.930479e-01	ci right 3.943637e-01	k: 834656	n:2120000
KS ci ratio: 2.208505e-01	ci left: 1.321831e-04	ci right 1.654340e-04	k: 314	n:2120000
FAT4   2120000 perm   2835 sec   (748 perm/sec)   p_kst 1.481132e-04   p_cons 3.937057e-01   p_joint 5.896226e-04

Joint ci ratio: 1.118764e-01	ci left: 5.438232e-04	ci right 6.087209e-04	k: 1226	n:2130000
Cons ci ratio: 3.333281e-03	ci left: 3.930274e-01	ci right 3.943401e-01	k: 838546	n:2130000
KS ci ratio: 2.205008e-01	ci left: 1.320060e-04	ci right 1.651527e-04	k: 315	n:2130000
FAT4   2130000 perm   2857 sec   (746 perm/sec)   p_kst 1.478873e-04   p_cons 3.936836e-01   p_joint 5.755869e-04

Joint ci ratio: 1.115586e-01	ci left: 5.444616e-04	ci right 6.092387e-04	k: 1233	n:2140000
Cons ci ratio: 3.325382e-03	ci left: 3.930435e-01	ci right 3.943531e-01	k: 842514	n:2140000
KS ci ratio: 2.191182e-01	ci left: 1.331555e-04	ci right 1.663529e-04	k: 319	n:2140000
FAT4   2140000 perm   2879 sec   (743 perm/sec)   p_kst 1.490654e-04   p_cons 3.936981e-01   p_joint 5.761682e-04

Joint ci ratio: 1.111987e-01	ci left: 5.455465e-04	ci right 6.102296e-04	k: 1241	n:2150000
Cons ci ratio: 3.317533e-03	ci left: 3.930603e-01	ci right 3.943669e-01	k: 846484	n:2150000
KS ci ratio: 2.184366e-01	ci left: 1.334154e-04	ci right 1.665603e-04	k: 321	n:2150000
FAT4   2150000 perm   2900 sec   (741 perm/sec)   p_kst 1.493023e-04   p_cons 3.937135e-01   p_joint 5.772093e-04

Joint ci ratio: 1.110201e-01	ci left: 5.448212e-04	ci right 6.093078e-04	k: 1245	n:2160000
Cons ci ratio: 3.309884e-03	ci left: 3.930562e-01	ci right 3.943598e-01	k: 850409	n:2160000
KS ci ratio: 2.174261e-01	ci left: 1.341108e-04	ci right 1.672537e-04	k: 324	n:2160000
FAT4   2160000 perm   2922 sec   (739 perm/sec)   p_kst 1.500000e-04   p_cons 3.937079e-01   p_joint 5.763889e-04

Joint ci ratio: 1.106654e-01	ci left: 5.458950e-04	ci right 6.102887e-04	k: 1253	n:2170000
Cons ci ratio: 3.302312e-03	ci left: 3.930485e-01	ci right 3.943490e-01	k: 854326	n:2170000
KS ci ratio: 2.167601e-01	ci left: 1.343643e-04	ci right 1.674547e-04	k: 326	n:2170000
FAT4   2170000 perm   2944 sec   (737 perm/sec)   p_kst 1.502304e-04   p_cons 3.936986e-01   p_joint 5.774194e-04

Joint ci ratio: 1.103140e-01	ci left: 5.469592e-04	ci right 6.112603e-04	k: 1261	n:2180000
Cons ci ratio: 3.294578e-03	ci left: 3.930720e-01	ci right 3.943696e-01	k: 858311	n:2180000
KS ci ratio: 2.167602e-01	ci left: 1.337480e-04	ci right 1.666865e-04	k: 326	n:2180000
FAT4   2180000 perm   2965 sec   (735 perm/sec)   p_kst 1.495413e-04   p_cons 3.937206e-01   p_joint 5.784404e-04

Joint ci ratio: 1.099659e-01	ci left: 5.480140e-04	ci right 6.122227e-04	k: 1269	n:2190000
Cons ci ratio: 3.287328e-03	ci left: 3.930328e-01	ci right 3.943273e-01	k: 862159	n:2190000
KS ci ratio: 2.157726e-01	ci left: 1.344329e-04	ci right 1.673693e-04	k: 329	n:2190000
FAT4   2190000 perm   2987 sec   (733 perm/sec)   p_kst 1.502283e-04   p_cons 3.936799e-01   p_joint 5.794521e-04

Joint ci ratio: 1.099661e-01	ci left: 5.455230e-04	ci right 6.094399e-04	k: 1269	n:2200000
Cons ci ratio: 3.279669e-03	ci left: 3.930602e-01	ci right 3.943519e-01	k: 866153	n:2200000
KS ci ratio: 2.154464e-01	ci left: 1.342519e-04	ci right 1.670876e-04	k: 330	n:2200000
FAT4   2200000 perm   3009 sec   (731 perm/sec)   p_kst 1.500000e-04   p_cons 3.937059e-01   p_joint 5.768182e-04

Joint ci ratio: 1.097503e-01	ci left: 5.452548e-04	ci right 6.090068e-04	k: 1274	n:2210000
Cons ci ratio: 3.272235e-03	ci left: 3.930626e-01	ci right 3.943513e-01	k: 870092	n:2210000
KS ci ratio: 2.151217e-01	ci left: 1.340725e-04	ci right 1.668084e-04	k: 331	n:2210000
FAT4   2210000 perm   3031 sec   (729 perm/sec)   p_kst 1.497738e-04   p_cons 3.937068e-01   p_joint 5.764706e-04

Joint ci ratio: 1.096214e-01	ci left: 5.441130e-04	ci right 6.076520e-04	k: 1277	n:2220000
Cons ci ratio: 3.264958e-03	ci left: 3.930491e-01	ci right 3.943349e-01	k: 873996	n:2220000
KS ci ratio: 2.151218e-01	ci left: 1.334686e-04	ci right 1.660570e-04	k: 331	n:2220000
FAT4   2220000 perm   3053 sec   (727 perm/sec)   p_kst 1.490991e-04   p_cons 3.936919e-01   p_joint 5.752252e-04

Joint ci ratio: 1.094503e-01	ci left: 5.434176e-04	ci right 6.067699e-04	k: 1281	n:2230000
Cons ci ratio: 3.257584e-03	ci left: 3.930573e-01	ci right 3.943403e-01	k: 877948	n:2230000
KS ci ratio: 2.147986e-01	ci left: 1.332943e-04	ci right 1.657849e-04	k: 332	n:2230000
FAT4   2230000 perm   3076 sec   (725 perm/sec)   p_kst 1.488789e-04   p_cons 3.936987e-01   p_joint 5.744395e-04

Joint ci ratio: 1.091527e-01	ci left: 5.440312e-04	ci right 6.072715e-04	k: 1288	n:2240000
Cons ci ratio: 3.250149e-03	ci left: 3.930815e-01	ci right 3.943616e-01	k: 881936	n:2240000
KS ci ratio: 2.147987e-01	ci left: 1.326993e-04	ci right 1.650448e-04	k: 332	n:2240000
FAT4   2240000 perm   3098 sec   (723 perm/sec)   p_kst 1.482143e-04   p_cons 3.937214e-01   p_joint 5.750000e-04

Joint ci ratio: 1.088575e-01	ci left: 5.446396e-04	ci right 6.077684e-04	k: 1295	n:2250000
Cons ci ratio: 3.242964e-03	ci left: 3.930762e-01	ci right 3.943534e-01	k: 885858	n:2250000
KS ci ratio: 2.144769e-01	ci left: 1.325301e-04	ci right 1.647796e-04	k: 333	n:2250000
FAT4   2250000 perm   3120 sec   (721 perm/sec)   p_kst 1.480000e-04   p_cons 3.937147e-01   p_joint 5.755556e-04

Joint ci ratio: 1.087737e-01	ci left: 5.430905e-04	ci right 6.059883e-04	k: 1297	n:2260000
Cons ci ratio: 3.235794e-03	ci left: 3.930758e-01	ci right 3.943502e-01	k: 889791	n:2260000
KS ci ratio: 2.144770e-01	ci left: 1.319436e-04	ci right 1.640505e-04	k: 333	n:2260000
FAT4   2260000 perm   3143 sec   (719 perm/sec)   p_kst 1.473451e-04   p_cons 3.937128e-01   p_joint 5.738938e-04

Joint ci ratio: 1.085648e-01	ci left: 5.428408e-04	ci right 6.055812e-04	k: 1302	n:2270000
Cons ci ratio: 3.228576e-03	ci left: 3.930895e-01	ci right 3.943610e-01	k: 893756	n:2270000
KS ci ratio: 2.135201e-01	ci left: 1.326131e-04	ci right 1.647201e-04	k: 336	n:2270000
FAT4   2270000 perm   3165 sec   (717 perm/sec)   p_kst 1.480176e-04   p_cons 3.937251e-01   p_joint 5.735683e-04

Joint ci ratio: 1.083157e-01	ci left: 5.430202e-04	ci right 6.056281e-04	k: 1308	n:2280000
Cons ci ratio: 3.221501e-03	ci left: 3.930890e-01	ci right 3.943578e-01	k: 897689	n:2280000
KS ci ratio: 2.135202e-01	ci left: 1.320315e-04	ci right 1.639976e-04	k: 336	n:2280000
FAT4   2280000 perm   3188 sec   (715 perm/sec)   p_kst 1.473684e-04   p_cons 3.937232e-01   p_joint 5.736842e-04

Joint ci ratio: 1.082745e-01	ci left: 5.410737e-04	ci right 6.034319e-04	k: 1309	n:2290000
Cons ci ratio: 3.214613e-03	ci left: 3.930676e-01	ci right 3.943336e-01	k: 901574	n:2290000
KS ci ratio: 2.135202e-01	ci left: 1.314549e-04	ci right 1.632815e-04	k: 336	n:2290000
FAT4   2290000 perm   3211 sec   (713 perm/sec)   p_kst 1.467249e-04   p_cons 3.937004e-01   p_joint 5.716157e-04

Joint ci ratio: 1.081508e-01	ci left: 5.399903e-04	ci right 6.021480e-04	k: 1312	n:2300000
Cons ci ratio: 3.207643e-03	ci left: 3.930650e-01	ci right 3.943283e-01	k: 905502	n:2300000
KS ci ratio: 2.135203e-01	ci left: 1.308834e-04	ci right 1.625716e-04	k: 336	n:2300000
FAT4   2300000 perm   3234 sec   (711 perm/sec)   p_kst 1.460870e-04   p_cons 3.936965e-01   p_joint 5.704348e-04

Joint ci ratio: 1.079454e-01	ci left: 5.397586e-04	ci right 6.017643e-04	k: 1317	n:2310000
Cons ci ratio: 3.201168e-03	ci left: 3.929954e-01	ci right 3.942559e-01	k: 909275	n:2310000
KS ci ratio: 2.132042e-01	ci left: 1.307266e-04	ci right 1.623238e-04	k: 337	n:2310000
FAT4   2310000 perm   3257 sec   (709 perm/sec)   p_kst 1.458874e-04   p_cons 3.936255e-01   p_joint 5.701299e-04

Joint ci ratio: 1.078229e-01	ci left: 5.386903e-04	ci right 6.004984e-04	k: 1320	n:2320000
Cons ci ratio: 3.194300e-03	ci left: 3.929911e-01	ci right 3.942488e-01	k: 913198	n:2320000
KS ci ratio: 2.128896e-01	ci left: 1.305711e-04	ci right 1.620781e-04	k: 338	n:2320000
FAT4   2320000 perm   3280 sec   (707 perm/sec)   p_kst 1.456897e-04   p_cons 3.936198e-01   p_joint 5.689655e-04

Joint ci ratio: 1.078639e-01	ci left: 5.359607e-04	ci right 5.974805e-04	k: 1319	n:2330000
Cons ci ratio: 3.187381e-03	ci left: 3.930009e-01	ci right 3.942560e-01	k: 917154	n:2330000
KS ci ratio: 2.125763e-01	ci left: 1.304171e-04	ci right 1.618345e-04	k: 339	n:2330000
FAT4   2330000 perm   3303 sec   (705 perm/sec)   p_kst 1.454936e-04   p_cons 3.936283e-01   p_joint 5.660944e-04

Joint ci ratio: 1.103162e-01	ci left: 5.095597e-04	ci right 5.694653e-04	k: 1261	n:2340000
Cons ci ratio: 3.180479e-03	ci left: 3.930150e-01	ci right 3.942673e-01	k: 921120	n:2340000
KS ci ratio: 2.125764e-01	ci left: 1.298597e-04	ci right 1.611430e-04	k: 339	n:2340000
FAT4   2340000 perm   3326 sec   (704 perm/sec)   p_kst 1.448718e-04   p_cons 3.936410e-01   p_joint 5.388889e-04

Joint ci ratio: 1.099681e-01	ci left: 5.107019e-04	ci right 5.705401e-04	k: 1269	n:2350000
Cons ci ratio: 3.173726e-03	ci left: 3.930132e-01	ci right 3.942629e-01	k: 925049	n:2350000
KS ci ratio: 2.122645e-01	ci left: 1.297100e-04	ci right 1.609054e-04	k: 340	n:2350000
FAT4   2350000 perm   3349 sec   (702 perm/sec)   p_kst 1.446809e-04   p_cons 3.936379e-01   p_joint 5.400000e-04

Joint ci ratio: 1.120625e-01	ci left: 4.891753e-04	ci right 5.476549e-04	k: 1222	n:2360000
Cons ci ratio: 3.166745e-03	ci left: 3.930520e-01	ci right 3.942991e-01	k: 929074	n:2360000
KS ci ratio: 2.116447e-01	ci left: 1.299629e-04	ci right 1.611159e-04	k: 342	n:2360000
FAT4   2360000 perm   3372 sec   (700 perm/sec)   p_kst 1.449153e-04   p_cons 3.936754e-01   p_joint 5.177966e-04

Joint ci ratio: 1.117886e-01	ci left: 4.895720e-04	ci right 5.479466e-04	k: 1228	n:2370000
Cons ci ratio: 3.160048e-03	ci left: 3.930547e-01	ci right 3.942991e-01	k: 933014	n:2370000
KS ci ratio: 2.116447e-01	ci left: 1.294145e-04	ci right 1.604361e-04	k: 342	n:2370000
FAT4   2370000 perm   3395 sec   (698 perm/sec)   p_kst 1.443038e-04   p_cons 3.936768e-01   p_joint 5.181435e-04

Joint ci ratio: 1.115167e-01	ci left: 4.899656e-04	ci right 5.482357e-04	k: 1234	n:2380000
Cons ci ratio: 3.153369e-03	ci left: 3.930612e-01	ci right 3.943030e-01	k: 936963	n:2380000
KS ci ratio: 2.113369e-01	ci left: 1.292687e-04	ci right 1.602044e-04	k: 343	n:2380000
FAT4   2380000 perm   3418 sec   (696 perm/sec)   p_kst 1.441176e-04   p_cons 3.936819e-01   p_joint 5.184874e-04

Joint ci ratio: 1.110232e-01	ci left: 4.923900e-04	ci right 5.506723e-04	k: 1245	n:2390000
Cons ci ratio: 3.146629e-03	ci left: 3.930830e-01	ci right 3.943223e-01	k: 940949	n:2390000
KS ci ratio: 2.113370e-01	ci left: 1.287278e-04	ci right 1.595341e-04	k: 343	n:2390000
FAT4   2390000 perm   3442 sec   (694 perm/sec)   p_kst 1.435146e-04   p_cons 3.937025e-01   p_joint 5.209205e-04

Joint ci ratio: 1.108454e-01	ci left: 4.919588e-04	ci right 5.500908e-04	k: 1249	n:2400000
Cons ci ratio: 3.139911e-03	ci left: 3.931080e-01	ci right 3.943447e-01	k: 944943	n:2400000
KS ci ratio: 2.104214e-01	ci left: 1.293754e-04	ci right 1.601853e-04	k: 346	n:2400000
FAT4   2400000 perm   3465 sec   (693 perm/sec)   p_kst 1.441667e-04   p_cons 3.937262e-01   p_joint 5.204167e-04

Joint ci ratio: 1.107127e-01	ci left: 4.911278e-04	ci right 5.490875e-04	k: 1252	n:2410000
Cons ci ratio: 3.133238e-03	ci left: 3.931325e-01	ci right 3.943666e-01	k: 948936	n:2410000
KS ci ratio: 2.101188e-01	ci left: 1.292317e-04	ci right 1.599574e-04	k: 347	n:2410000
FAT4   2410000 perm   3488 sec   (691 perm/sec)   p_kst 1.439834e-04   p_cons 3.937494e-01   p_joint 5.195021e-04

Joint ci ratio: 1.104925e-01	ci left: 4.911073e-04	ci right 5.489418e-04	k: 1257	n:2420000
Cons ci ratio: 3.126813e-03	ci left: 3.931253e-01	ci right 3.943568e-01	k: 952853	n:2420000
KS ci ratio: 2.098176e-01	ci left: 1.290892e-04	ci right 1.597313e-04	k: 348	n:2420000
FAT4   2420000 perm   3512 sec   (689 perm/sec)   p_kst 1.438017e-04   p_cons 3.937409e-01   p_joint 5.194215e-04

Joint ci ratio: 1.103610e-01	ci left: 4.902867e-04	ci right 5.479515e-04	k: 1260	n:2430000
Cons ci ratio: 3.120395e-03	ci left: 3.931231e-01	ci right 3.943521e-01	k: 956782	n:2430000
KS ci ratio: 2.098177e-01	ci left: 1.285579e-04	ci right 1.590740e-04	k: 348	n:2430000
FAT4   2430000 perm   3536 sec   (687 perm/sec)   p_kst 1.432099e-04   p_cons 3.937374e-01   p_joint 5.185185e-04

Joint ci ratio: 1.108459e-01	ci left: 4.838938e-04	ci right 5.410730e-04	k: 1249	n:2440000
Cons ci ratio: 3.113963e-03	ci left: 3.931291e-01	ci right 3.943556e-01	k: 960731	n:2440000
KS ci ratio: 2.095177e-01	ci left: 1.284194e-04	ci right 1.588534e-04	k: 349	n:2440000
FAT4   2440000 perm   3560 sec   (685 perm/sec)   p_kst 1.430328e-04   p_cons 3.937422e-01   p_joint 5.118852e-04

Joint ci ratio: 1.121553e-01	ci left: 4.704119e-04	ci right 5.266981e-04	k: 1220	n:2450000
Cons ci ratio: 3.107555e-03	ci left: 3.931375e-01	ci right 3.943615e-01	k: 964686	n:2450000
KS ci ratio: 2.092191e-01	ci left: 1.282820e-04	ci right 1.586345e-04	k: 350	n:2450000
FAT4   2450000 perm   3584 sec   (684 perm/sec)   p_kst 1.428571e-04   p_cons 3.937494e-01   p_joint 4.979592e-04

Joint ci ratio: 1.120637e-01	ci left: 4.692898e-04	ci right 5.253928e-04	k: 1222	n:2460000
Cons ci ratio: 3.101215e-03	ci left: 3.931414e-01	ci right 3.943629e-01	k: 968630	n:2460000
KS ci ratio: 2.089217e-01	ci left: 1.281457e-04	ci right 1.584174e-04	k: 351	n:2460000
FAT4   2460000 perm   3608 sec   (682 perm/sec)   p_kst 1.426829e-04   p_cons 3.937520e-01   p_joint 4.967480e-04

Joint ci ratio: 1.118353e-01	ci left: 4.693575e-04	ci right 5.253467e-04	k: 1227	n:2470000
Cons ci ratio: 3.095011e-03	ci left: 3.931303e-01	ci right 3.943493e-01	k: 972537	n:2470000
KS ci ratio: 2.080370e-01	ci left: 1.287781e-04	ci right 1.590540e-04	k: 354	n:2470000
FAT4   2470000 perm   3632 sec   (680 perm/sec)   p_kst 1.433198e-04   p_cons 3.937397e-01   p_joint 4.967611e-04

Joint ci ratio: 1.115630e-01	ci left: 4.698167e-04	ci right 5.257153e-04	k: 1233	n:2480000
Cons ci ratio: 3.088816e-03	ci left: 3.931237e-01	ci right 3.943403e-01	k: 976455	n:2480000
KS ci ratio: 2.071634e-01	ci left: 1.294056e-04	ci right 1.596851e-04	k: 357	n:2480000
FAT4   2480000 perm   3656 sec   (678 perm/sec)   p_kst 1.439516e-04   p_cons 3.937319e-01   p_joint 4.971774e-04

Joint ci ratio: 1.112479e-01	ci left: 4.706628e-04	ci right 5.264935e-04	k: 1240	n:2490000
Cons ci ratio: 3.082377e-03	ci left: 3.931605e-01	ci right 3.943747e-01	k: 980481	n:2490000
KS ci ratio: 2.065872e-01	ci left: 1.296475e-04	ci right 1.598885e-04	k: 359	n:2490000
FAT4   2490000 perm   3680 sec   (677 perm/sec)   p_kst 1.441767e-04   p_cons 3.937675e-01   p_joint 4.979920e-04

Joint ci ratio: 1.111584e-01	ci left: 4.695579e-04	ci right 5.252098e-04	k: 1242	n:2500000
Cons ci ratio: 3.076306e-03	ci left: 3.931463e-01	ci right 3.943580e-01	k: 984380	n:2500000
KS ci ratio: 2.063009e-01	ci left: 1.295082e-04	ci right 1.596696e-04	k: 360	n:2500000
FAT4   2500000 perm   3705 sec   (675 perm/sec)   p_kst 1.440000e-04   p_cons 3.937520e-01   p_joint 4.968000e-04

Joint ci ratio: 1.153175e-01	ci left: 4.336195e-04	ci right 4.870659e-04	k: 1154	n:2510000
Cons ci ratio: 3.070170e-03	ci left: 3.931477e-01	ci right 3.943569e-01	k: 988318	n:2510000
KS ci ratio: 2.057317e-01	ci left: 1.297480e-04	ci right 1.598714e-04	k: 362	n:2510000
FAT4   2510000 perm   3729 sec   (673 perm/sec)   p_kst 1.442231e-04   p_cons 3.937522e-01   p_joint 4.597610e-04

Joint ci ratio: 1.150191e-01	ci left: 4.342112e-04	ci right 4.875826e-04	k: 1160	n:2520000
Cons ci ratio: 3.064219e-03	ci left: 3.931261e-01	ci right 3.943329e-01	k: 992198	n:2520000
KS ci ratio: 2.054489e-01	ci left: 1.296095e-04	ci right 1.596542e-04	k: 363	n:2520000
FAT4   2520000 perm   3753 sec   (671 perm/sec)   p_kst 1.440476e-04   p_cons 3.937294e-01   p_joint 4.603175e-04

Joint ci ratio: 1.146738e-01	ci left: 4.351823e-04	ci right 4.885016e-04	k: 1167	n:2530000
Cons ci ratio: 3.058049e-03	ci left: 3.931441e-01	ci right 3.943486e-01	k: 996178	n:2530000
KS ci ratio: 2.048868e-01	ci left: 1.298471e-04	ci right 1.598542e-04	k: 365	n:2530000
FAT4   2530000 perm   3778 sec   (670 perm/sec)   p_kst 1.442688e-04   p_cons 3.937462e-01   p_joint 4.612648e-04

Joint ci ratio: 1.144780e-01	ci left: 4.349986e-04	ci right 4.881983e-04	k: 1171	n:2540000
Cons ci ratio: 3.051924e-03	ci left: 3.931609e-01	ci right 3.943630e-01	k: 1000155	n:2540000
KS ci ratio: 2.043293e-01	ci left: 1.300830e-04	ci right 1.600525e-04	k: 367	n:2540000
FAT4   2540000 perm   3803 sec   (668 perm/sec)   p_kst 1.444882e-04   p_cons 3.937618e-01   p_joint 4.610236e-04

Joint ci ratio: 1.222368e-01	ci left: 3.784915e-04	ci right 4.281447e-04	k: 1027	n:2550000
Cons ci ratio: 3.046138e-03	ci left: 3.931301e-01	ci right 3.943298e-01	k: 1004011	n:2550000
KS ci ratio: 2.037763e-01	ci left: 1.303171e-04	ci right 1.602492e-04	k: 369	n:2550000
FAT4   2550000 perm   3827 sec   (666 perm/sec)   p_kst 1.447059e-04   p_cons 3.937298e-01   p_joint 4.027451e-04

Joint ci ratio: 1.230175e-01	ci left: 3.720906e-04	ci right 4.212386e-04	k: 1014	n:2560000
Cons ci ratio: 3.040219e-03	ci left: 3.931257e-01	ci right 3.943230e-01	k: 1007934	n:2560000
KS ci ratio: 2.037763e-01	ci left: 1.298080e-04	ci right 1.596233e-04	k: 369	n:2560000
FAT4   2560000 perm   3852 sec   (665 perm/sec)   p_kst 1.441406e-04   p_cons 3.937242e-01   p_joint 3.960938e-04

Joint ci ratio: 1.228965e-01	ci left: 3.713970e-04	ci right 4.204017e-04	k: 1016	n:2570000
Cons ci ratio: 3.034410e-03	ci left: 3.931092e-01	ci right 3.943043e-01	k: 1011826	n:2570000
KS ci ratio: 2.035015e-01	ci left: 1.296722e-04	ci right 1.594111e-04	k: 370	n:2570000
FAT4   2570000 perm   3877 sec   (663 perm/sec)   p_kst 1.439689e-04   p_cons 3.937066e-01   p_joint 3.953307e-04

Joint ci ratio: 1.227157e-01	ci left: 3.710846e-04	ci right 4.199707e-04	k: 1019	n:2580000
Cons ci ratio: 3.028600e-03	ci left: 3.930983e-01	ci right 3.942910e-01	k: 1015732	n:2580000
KS ci ratio: 2.029552e-01	ci left: 1.299053e-04	ci right 1.596078e-04	k: 372	n:2580000
FAT4   2580000 perm   3902 sec   (661 perm/sec)   p_kst 1.441860e-04   p_cons 3.936946e-01   p_joint 3.949612e-04

Joint ci ratio: 1.224160e-01	ci left: 3.715231e-04	ci right 4.203388e-04	k: 1024	n:2590000
Cons ci ratio: 3.022674e-03	ci left: 3.931111e-01	ci right 3.943015e-01	k: 1019699	n:2590000
KS ci ratio: 2.026837e-01	ci left: 1.297703e-04	ci right 1.593972e-04	k: 373	n:2590000
FAT4   2590000 perm   3927 sec   (660 perm/sec)   p_kst 1.440154e-04   p_cons 3.937062e-01   p_joint 3.953668e-04

Joint ci ratio: 1.227159e-01	ci left: 3.682300e-04	ci right 4.167402e-04	k: 1019	n:2600000
Cons ci ratio: 3.016929e-03	ci left: 3.931007e-01	ci right 3.942888e-01	k: 1023606	n:2600000
KS ci ratio: 2.021439e-01	ci left: 1.300014e-04	ci right 1.595923e-04	k: 375	n:2600000
FAT4   2600000 perm   3952 sec   (658 perm/sec)   p_kst 1.442308e-04   p_cons 3.936946e-01   p_joint 3.919231e-04

Joint ci ratio: 1.224759e-01	ci left: 3.683048e-04	ci right 4.167230e-04	k: 1023	n:2610000
Cons ci ratio: 3.010931e-03	ci left: 3.931355e-01	ci right 3.943214e-01	k: 1027631	n:2610000
KS ci ratio: 2.018757e-01	ci left: 1.298671e-04	ci right 1.593834e-04	k: 376	n:2610000
FAT4   2610000 perm   3977 sec   (656 perm/sec)   p_kst 1.440613e-04   p_cons 3.937284e-01   p_joint 3.919540e-04

Joint ci ratio: 1.220002e-01	ci left: 3.698591e-04	ci right 4.182792e-04	k: 1031	n:2620000
Cons ci ratio: 3.004882e-03	ci left: 3.931839e-01	ci right 3.943675e-01	k: 1031692	n:2620000
KS ci ratio: 2.010771e-01	ci left: 1.304587e-04	ci right 1.599777e-04	k: 379	n:2620000
FAT4   2620000 perm   4002 sec   (655 perm/sec)   p_kst 1.446565e-04   p_cons 3.937756e-01   p_joint 3.935115e-04

Joint ci ratio: 1.221781e-01	ci left: 3.673469e-04	ci right 4.155133e-04	k: 1028	n:2630000
Cons ci ratio: 2.999326e-03	ci left: 3.931593e-01	ci right 3.943406e-01	k: 1035562	n:2630000
KS ci ratio: 2.002880e-01	ci left: 1.310460e-04	ci right 1.605674e-04	k: 382	n:2630000
FAT4   2630000 perm   4027 sec   (653 perm/sec)   p_kst 1.452471e-04   p_cons 3.937498e-01   p_joint 3.908745e-04

Joint ci ratio: 1.218823e-01	ci left: 3.677916e-04	ci right 4.158911e-04	k: 1033	n:2640000
Cons ci ratio: 2.993605e-03	ci left: 3.931659e-01	ci right 3.943450e-01	k: 1039514	n:2640000
KS ci ratio: 1.995081e-01	ci left: 1.316291e-04	ci right 1.611523e-04	k: 385	n:2640000
FAT4   2640000 perm   4053 sec   (651 perm/sec)   p_kst 1.458333e-04   p_cons 3.937553e-01   p_joint 3.912879e-04

Joint ci ratio: 1.240620e-01	ci left: 3.532365e-04	ci right 4.003194e-04	k: 997	n:2650000
Cons ci ratio: 2.987759e-03	ci left: 3.931977e-01	ci right 3.943746e-01	k: 1043533	n:2650000
KS ci ratio: 1.987373e-01	ci left: 1.322080e-04	ci right 1.617326e-04	k: 388	n:2650000
FAT4   2650000 perm   4078 sec   (650 perm/sec)   p_kst 1.464151e-04   p_cons 3.937860e-01   p_joint 3.762264e-04

Joint ci ratio: 1.238760e-01	ci left: 3.530014e-04	ci right 3.999772e-04	k: 1000	n:2660000
Cons ci ratio: 2.982070e-03	ci left: 3.932098e-01	ci right 3.943845e-01	k: 1047500	n:2660000
KS ci ratio: 1.987373e-01	ci left: 1.317110e-04	ci right 1.611246e-04	k: 388	n:2660000
FAT4   2660000 perm   4103 sec   (648 perm/sec)   p_kst 1.458647e-04   p_cons 3.937970e-01   p_joint 3.759398e-04

Joint ci ratio: 1.234451e-01	ci left: 3.542199e-04	ci right 4.011819e-04	k: 1007	n:2670000
Cons ci ratio: 2.976538e-03	ci left: 3.932015e-01	ci right 3.943740e-01	k: 1051413	n:2670000
KS ci ratio: 1.972220e-01	ci left: 1.333535e-04	ci right 1.628796e-04	k: 394	n:2670000
FAT4   2670000 perm   4129 sec   (647 perm/sec)   p_kst 1.475655e-04   p_cons 3.937876e-01   p_joint 3.771536e-04

Joint ci ratio: 1.230792e-01	ci left: 3.550680e-04	ci right 4.019928e-04	k: 1013	n:2680000
Cons ci ratio: 2.970880e-03	ci left: 3.932187e-01	ci right 3.943890e-01	k: 1055394	n:2680000
KS ci ratio: 1.962308e-01	ci left: 1.342750e-04	ci right 1.638378e-04	k: 398	n:2680000
FAT4   2680000 perm   4154 sec   (645 perm/sec)   p_kst 1.485075e-04   p_cons 3.938037e-01   p_joint 3.779851e-04

Joint ci ratio: 1.229581e-01	ci left: 3.544686e-04	ci right 4.012647e-04	k: 1015	n:2690000
Cons ci ratio: 2.965239e-03	ci left: 3.932380e-01	ci right 3.944061e-01	k: 1059381	n:2690000
KS ci ratio: 1.959854e-01	ci left: 1.341293e-04	ci right 1.636187e-04	k: 399	n:2690000
FAT4   2690000 perm   4180 sec   (644 perm/sec)   p_kst 1.483271e-04   p_cons 3.938219e-01   p_joint 3.773234e-04

Joint ci ratio: 1.227770e-01	ci left: 3.542327e-04	ci right 4.009238e-04	k: 1018	n:2700000
Cons ci ratio: 2.959762e-03	ci left: 3.932360e-01	ci right 3.944020e-01	k: 1063311	n:2700000
KS ci ratio: 1.954972e-01	ci left: 1.343370e-04	ci right 1.637897e-04	k: 401	n:2700000
FAT4   2700000 perm   4206 sec   (642 perm/sec)   p_kst 1.485185e-04   p_cons 3.938189e-01   p_joint 3.770370e-04

Joint ci ratio: 1.238764e-01	ci left: 3.464883e-04	ci right 3.925976e-04	k: 1000	n:2710000
Cons ci ratio: 2.954539e-03	ci left: 3.931979e-01	ci right 3.943617e-01	k: 1067143	n:2710000
KS ci ratio: 1.954973e-01	ci left: 1.338413e-04	ci right 1.631853e-04	k: 401	n:2710000
FAT4   2710000 perm   4232 sec   (640 perm/sec)   p_kst 1.479705e-04   p_cons 3.937797e-01   p_joint 3.690037e-04

Joint ci ratio: 1.237529e-01	ci left: 3.459270e-04	ci right 3.919123e-04	k: 1002	n:2720000
Cons ci ratio: 2.948986e-03	ci left: 3.932178e-01	ci right 3.943795e-01	k: 1071132	n:2720000
KS ci ratio: 1.950128e-01	ci left: 1.340485e-04	ci right 1.633566e-04	k: 403	n:2720000
FAT4   2720000 perm   4258 sec   (639 perm/sec)   p_kst 1.481618e-04   p_cons 3.937985e-01   p_joint 3.683824e-04

Joint ci ratio: 1.237530e-01	ci left: 3.446599e-04	ci right 3.904768e-04	k: 1002	n:2730000
Cons ci ratio: 2.943576e-03	ci left: 3.932196e-01	ci right 3.943791e-01	k: 1075072	n:2730000
KS ci ratio: 1.950128e-01	ci left: 1.335575e-04	ci right 1.627582e-04	k: 403	n:2730000
FAT4   2730000 perm   4284 sec   (637 perm/sec)   p_kst 1.476190e-04   p_cons 3.937993e-01   p_joint 3.670330e-04

Joint ci ratio: 1.235684e-01	ci left: 3.444630e-04	ci right 3.901804e-04	k: 1005	n:2740000
Cons ci ratio: 2.938166e-03	ci left: 3.932262e-01	ci right 3.943836e-01	k: 1079025	n:2740000
KS ci ratio: 1.947719e-01	ci left: 1.334172e-04	ci right 1.625469e-04	k: 404	n:2740000
FAT4   2740000 perm   4310 sec   (636 perm/sec)   p_kst 1.474453e-04   p_cons 3.938047e-01   p_joint 3.667883e-04

Joint ci ratio: 1.232014e-01	ci left: 3.453249e-04	ci right 3.910107e-04	k: 1011	n:2750000
Cons ci ratio: 2.932899e-03	ci left: 3.932141e-01	ci right 3.943694e-01	k: 1082927	n:2750000
KS ci ratio: 1.947720e-01	ci left: 1.329321e-04	ci right 1.619559e-04	k: 404	n:2750000
FAT4   2750000 perm   4336 sec   (634 perm/sec)   p_kst 1.469091e-04   p_cons 3.937916e-01   p_joint 3.676364e-04

Joint ci ratio: 1.230799e-01	ci left: 3.447760e-04	ci right 3.903409e-04	k: 1013	n:2760000
Cons ci ratio: 2.927819e-03	ci left: 3.931764e-01	ci right 3.943296e-01	k: 1086758	n:2760000
KS ci ratio: 1.945320e-01	ci left: 1.327951e-04	ci right 1.617490e-04	k: 405	n:2760000
FAT4   2760000 perm   4362 sec   (633 perm/sec)   p_kst 1.467391e-04   p_cons 3.937529e-01   p_joint 3.670290e-04

Joint ci ratio: 1.228983e-01	ci left: 3.445811e-04	ci right 3.900481e-04	k: 1016	n:2770000
Cons ci ratio: 2.922877e-03	ci left: 3.931206e-01	ci right 3.942717e-01	k: 1090538	n:2770000
KS ci ratio: 1.945320e-01	ci left: 1.323157e-04	ci right 1.611651e-04	k: 405	n:2770000
FAT4   2770000 perm   4388 sec   (631 perm/sec)   p_kst 1.462094e-04   p_cons 3.936960e-01   p_joint 3.667870e-04

Joint ci ratio: 1.231408e-01	ci left: 3.419470e-04	ci right 3.871620e-04	k: 1012	n:2780000
Cons ci ratio: 2.917659e-03	ci left: 3.931145e-01	ci right 3.942635e-01	k: 1094455	n:2780000
KS ci ratio: 1.945321e-01	ci left: 1.318397e-04	ci right 1.605854e-04	k: 405	n:2780000
FAT4   2780000 perm   4415 sec   (630 perm/sec)   p_kst 1.456835e-04   p_cons 3.936888e-01   p_joint 3.640288e-04

Joint ci ratio: 1.228380e-01	ci left: 3.424583e-04	ci right 3.876215e-04	k: 1017	n:2790000
Cons ci ratio: 2.912262e-03	ci left: 3.931424e-01	ci right 3.942894e-01	k: 1098467	n:2790000
KS ci ratio: 1.938173e-01	ci left: 1.323902e-04	ci right 1.611373e-04	k: 408	n:2790000
FAT4   2790000 perm   4442 sec   (628 perm/sec)   p_kst 1.462366e-04   p_cons 3.937158e-01   p_joint 3.645161e-04

Joint ci ratio: 1.227176e-01	ci left: 3.419276e-04	ci right 3.869734e-04	k: 1019	n:2800000
Cons ci ratio: 2.907209e-03	ci left: 3.931184e-01	ci right 3.942633e-01	k: 1102334	n:2800000
KS ci ratio: 1.935808e-01	ci left: 1.322572e-04	ci right 1.609362e-04	k: 409	n:2800000
FAT4   2800000 perm   4468 sec   (627 perm/sec)   p_kst 1.460714e-04   p_cons 3.936907e-01   p_joint 3.639286e-04

Joint ci ratio: 1.224179e-01	ci left: 3.424356e-04	ci right 3.874301e-04	k: 1024	n:2810000
Cons ci ratio: 2.901964e-03	ci left: 3.931305e-01	ci right 3.942733e-01	k: 1106302	n:2810000
KS ci ratio: 1.935808e-01	ci left: 1.317865e-04	ci right 1.603635e-04	k: 409	n:2810000
FAT4   2810000 perm   4495 sec   (625 perm/sec)   p_kst 1.455516e-04   p_cons 3.937018e-01   p_joint 3.644128e-04

Joint ci ratio: 1.221204e-01	ci left: 3.429401e-04	ci right 3.878835e-04	k: 1029	n:2820000
Cons ci ratio: 2.896873e-03	ci left: 3.931219e-01	ci right 3.942627e-01	k: 1110212	n:2820000
KS ci ratio: 1.931104e-01	ci left: 1.319941e-04	ci right 1.605383e-04	k: 411	n:2820000
FAT4   2820000 perm   4521 sec   (624 perm/sec)   p_kst 1.457447e-04   p_cons 3.936922e-01   p_joint 3.648936e-04

Joint ci ratio: 1.218839e-01	ci left: 3.430986e-04	ci right 3.879694e-04	k: 1033	n:2830000
Cons ci ratio: 2.891788e-03	ci left: 3.931166e-01	ci right 3.942554e-01	k: 1114131	n:2830000
KS ci ratio: 1.931104e-01	ci left: 1.315277e-04	ci right 1.599711e-04	k: 411	n:2830000
FAT4   2830000 perm   4548 sec   (622 perm/sec)   p_kst 1.452297e-04   p_cons 3.936859e-01   p_joint 3.650177e-04

Joint ci ratio: 1.218251e-01	ci left: 3.422319e-04	ci right 3.869662e-04	k: 1034	n:2840000
Cons ci ratio: 2.886722e-03	ci left: 3.931127e-01	ci right 3.942495e-01	k: 1118054	n:2840000
KS ci ratio: 1.928765e-01	ci left: 1.313997e-04	ci right 1.597769e-04	k: 412	n:2840000
FAT4   2840000 perm   4575 sec   (621 perm/sec)   p_kst 1.450704e-04   p_cons 3.936810e-01   p_joint 3.640845e-04

Joint ci ratio: 1.218251e-01	ci left: 3.410311e-04	ci right 3.856084e-04	k: 1034	n:2850000
Cons ci ratio: 2.881685e-03	ci left: 3.931085e-01	ci right 3.942433e-01	k: 1121976	n:2850000
KS ci ratio: 1.928766e-01	ci left: 1.309386e-04	ci right 1.592163e-04	k: 412	n:2850000
FAT4   2850000 perm   4602 sec   (619 perm/sec)   p_kst 1.445614e-04   p_cons 3.936758e-01   p_joint 3.628070e-04

Joint ci ratio: 1.215319e-01	ci left: 3.415337e-04	ci right 3.860616e-04	k: 1039	n:2860000
Cons ci ratio: 2.876751e-03	ci left: 3.930914e-01	ci right 3.942242e-01	k: 1125861	n:2860000
KS ci ratio: 1.926435e-01	ci left: 1.308135e-04	ci right 1.590261e-04	k: 413	n:2860000
FAT4   2860000 perm   4629 sec   (618 perm/sec)   p_kst 1.444056e-04   p_cons 3.936577e-01   p_joint 3.632867e-04

Joint ci ratio: 1.210671e-01	ci left: 3.430466e-04	ci right 3.875884e-04	k: 1047	n:2870000
Cons ci ratio: 2.871822e-03	ci left: 3.930779e-01	ci right 3.942087e-01	k: 1129756	n:2870000
KS ci ratio: 1.919492e-01	ci left: 1.313527e-04	ci right 1.595675e-04	k: 416	n:2870000
FAT4   2870000 perm   4656 sec   (616 perm/sec)   p_kst 1.449477e-04   p_cons 3.936432e-01   p_joint 3.648084e-04

Joint ci ratio: 1.211829e-01	ci left: 3.411820e-04	ci right 3.855271e-04	k: 1045	n:2880000
Cons ci ratio: 2.866827e-03	ci left: 3.930798e-01	ci right 3.942086e-01	k: 1133695	n:2880000
KS ci ratio: 1.914906e-01	ci left: 1.315578e-04	ci right 1.597412e-04	k: 418	n:2880000
FAT4   2880000 perm   4684 sec   (615 perm/sec)   p_kst 1.451389e-04   p_cons 3.936441e-01   p_joint 3.628472e-04

Joint ci ratio: 1.207793e-01	ci left: 3.423503e-04	ci right 3.866885e-04	k: 1052	n:2890000
Cons ci ratio: 2.861884e-03	ci left: 3.930772e-01	ci right 3.942040e-01	k: 1137621	n:2890000
KS ci ratio: 1.905829e-01	ci left: 1.324204e-04	ci right 1.606387e-04	k: 422	n:2890000
FAT4   2890000 perm   4711 sec   (613 perm/sec)   p_kst 1.460208e-04   p_cons 3.936405e-01   p_joint 3.640138e-04

Joint ci ratio: 1.214738e-01	ci left: 3.371572e-04	ci right 3.810920e-04	k: 1040	n:2900000
Cons ci ratio: 2.857083e-03	ci left: 3.930552e-01	ci right 3.941802e-01	k: 1141491	n:2900000
KS ci ratio: 1.901340e-01	ci left: 1.326206e-04	ci right 1.608072e-04	k: 424	n:2900000
FAT4   2900000 perm   4738 sec   (612 perm/sec)   p_kst 1.462069e-04   p_cons 3.936176e-01   p_joint 3.586207e-04

Joint ci ratio: 1.214156e-01	ci left: 3.363318e-04	ci right 3.801364e-04	k: 1041	n:2910000
Cons ci ratio: 2.852229e-03	ci left: 3.930462e-01	ci right 3.941692e-01	k: 1145398	n:2910000
KS ci ratio: 1.901340e-01	ci left: 1.321649e-04	ci right 1.602546e-04	k: 424	n:2910000
FAT4   2910000 perm   4766 sec   (611 perm/sec)   p_kst 1.457045e-04   p_cons 3.936076e-01   p_joint 3.577320e-04

Joint ci ratio: 1.211253e-01	ci left: 3.368403e-04	ci right 3.805988e-04	k: 1046	n:2920000
Cons ci ratio: 2.847343e-03	ci left: 3.930468e-01	ci right 3.941678e-01	k: 1149333	n:2920000
KS ci ratio: 1.892454e-01	ci left: 1.330171e-04	ci right 1.611406e-04	k: 428	n:2920000
FAT4   2920000 perm   4793 sec   (609 perm/sec)   p_kst 1.465753e-04   p_cons 3.936072e-01   p_joint 3.582192e-04

Joint ci ratio: 1.211253e-01	ci left: 3.356907e-04	ci right 3.792999e-04	k: 1046	n:2930000
Cons ci ratio: 2.842464e-03	ci left: 3.930504e-01	ci right 3.941696e-01	k: 1153277	n:2930000
KS ci ratio: 1.892455e-01	ci left: 1.325631e-04	ci right 1.605907e-04	k: 428	n:2930000
FAT4   2930000 perm   4821 sec   (608 perm/sec)   p_kst 1.460751e-04   p_cons 3.936099e-01   p_joint 3.569966e-04

Joint ci ratio: 1.209522e-01	ci left: 3.355384e-04	ci right 3.790610e-04	k: 1049	n:2940000
Cons ci ratio: 2.837600e-03	ci left: 3.930558e-01	ci right 3.941730e-01	k: 1157226	n:2940000
KS ci ratio: 1.890253e-01	ci left: 1.324362e-04	ci right 1.604007e-04	k: 429	n:2940000
FAT4   2940000 perm   4848 sec   (606 perm/sec)   p_kst 1.459184e-04   p_cons 3.936143e-01   p_joint 3.568027e-04

Joint ci ratio: 1.219438e-01	ci left: 3.288133e-04	ci right 3.718385e-04	k: 1032	n:2950000
Cons ci ratio: 2.832630e-03	ci left: 3.930831e-01	ci right 3.941985e-01	k: 1161240	n:2950000
KS ci ratio: 1.883693e-01	ci left: 1.329562e-04	ci right 1.609219e-04	k: 432	n:2950000
FAT4   2950000 perm   4876 sec   (605 perm/sec)   p_kst 1.464407e-04   p_cons 3.936407e-01   p_joint 3.498305e-04

Joint ci ratio: 1.217671e-01	ci left: 3.286850e-04	ci right 3.716267e-04	k: 1035	n:2960000
Cons ci ratio: 2.827958e-03	ci left: 3.930643e-01	ci right 3.941778e-01	k: 1165118	n:2960000
KS ci ratio: 1.877201e-01	ci left: 1.334728e-04	ci right 1.614394e-04	k: 435	n:2960000
FAT4   2960000 perm   4904 sec   (604 perm/sec)   p_kst 1.469595e-04   p_cons 3.936209e-01   p_joint 3.496622e-04

Joint ci ratio: 1.214743e-01	ci left: 3.292106e-04	ci right 3.721101e-04	k: 1040	n:2970000
Cons ci ratio: 2.823359e-03	ci left: 3.930372e-01	ci right 3.941488e-01	k: 1168971	n:2970000
KS ci ratio: 1.868648e-01	ci left: 1.343071e-04	ci right 1.623057e-04	k: 439	n:2970000
FAT4   2970000 perm   4932 sec   (602 perm/sec)   p_kst 1.478114e-04   p_cons 3.935929e-01   p_joint 3.501684e-04

Joint ci ratio: 1.212416e-01	ci left: 3.294074e-04	ci right 3.722444e-04	k: 1044	n:2980000
Cons ci ratio: 2.818566e-03	ci left: 3.930469e-01	ci right 3.941566e-01	k: 1172933	n:2980000
KS ci ratio: 1.868648e-01	ci left: 1.338564e-04	ci right 1.617610e-04	k: 439	n:2980000
FAT4   2980000 perm   4959 sec   (601 perm/sec)   p_kst 1.473154e-04   p_cons 3.936017e-01   p_joint 3.503356e-04

Joint ci ratio: 1.210680e-01	ci left: 3.292787e-04	ci right 3.720332e-04	k: 1047	n:2990000
Cons ci ratio: 2.813784e-03	ci left: 3.930589e-01	ci right 3.941667e-01	k: 1176902	n:2990000
KS ci ratio: 1.864416e-01	ci left: 1.340463e-04	ci right 1.619201e-04	k: 441	n:2990000
FAT4   2990000 perm   4987 sec   (600 perm/sec)   p_kst 1.474916e-04   p_cons 3.936127e-01   p_joint 3.501672e-04

Joint ci ratio: 1.208951e-01	ci left: 3.291508e-04	ci right 3.718233e-04	k: 1050	n:3000000
Cons ci ratio: 2.808935e-03	ci left: 3.930861e-01	ci right 3.941921e-01	k: 1180917	n:3000000
KS ci ratio: 1.860212e-01	ci left: 1.342351e-04	ci right 1.620781e-04	k: 443	n:3000000
FAT4   3000000 perm   5015 sec   (598 perm/sec)   p_kst 1.476667e-04   p_cons 3.936390e-01   p_joint 3.500000e-04

Joint ci ratio: 1.207802e-01	ci left: 3.287017e-04	ci right 3.712726e-04	k: 1052	n:3010000
Cons ci ratio: 2.804133e-03	ci left: 3.931095e-01	ci right 3.942137e-01	k: 1184921	n:3010000
KS ci ratio: 1.858121e-01	ci left: 1.341059e-04	ci right 1.618873e-04	k: 444	n:3010000
FAT4   3010000 perm   5043 sec   (597 perm/sec)   p_kst 1.475083e-04   p_cons 3.936615e-01   p_joint 3.495017e-04

Joint ci ratio: 1.205515e-01	ci left: 3.288978e-04	ci right 3.714076e-04	k: 1056	n:3020000
Cons ci ratio: 2.799414e-03	ci left: 3.931228e-01	ci right 3.942251e-01	k: 1188895	n:3020000
KS ci ratio: 1.858121e-01	ci left: 1.336618e-04	ci right 1.613513e-04	k: 444	n:3020000
FAT4   3020000 perm   5071 sec   (595 perm/sec)   p_kst 1.470199e-04   p_cons 3.936738e-01   p_joint 3.496689e-04

Joint ci ratio: 1.205515e-01	ci left: 3.278123e-04	ci right 3.701819e-04	k: 1056	n:3030000
Cons ci ratio: 2.794881e-03	ci left: 3.931082e-01	ci right 3.942088e-01	k: 1192785	n:3030000
KS ci ratio: 1.858121e-01	ci left: 1.332207e-04	ci right 1.608188e-04	k: 444	n:3030000
FAT4   3030000 perm   5100 sec   (594 perm/sec)   p_kst 1.465347e-04   p_cons 3.936584e-01   p_joint 3.485149e-04

Joint ci ratio: 1.201543e-01	ci left: 3.289673e-04	ci right 3.713361e-04	k: 1063	n:3040000
Cons ci ratio: 2.790313e-03	ci left: 3.931037e-01	ci right 3.942024e-01	k: 1196705	n:3040000
KS ci ratio: 1.856037e-01	ci left: 1.330961e-04	ci right 1.606340e-04	k: 445	n:3040000
FAT4   3040000 perm   5128 sec   (593 perm/sec)   p_kst 1.463816e-04   p_cons 3.936530e-01   p_joint 3.496711e-04

Joint ci ratio: 1.199852e-01	ci left: 3.288428e-04	ci right 3.711317e-04	k: 1066	n:3050000
Cons ci ratio: 2.785671e-03	ci left: 3.931156e-01	ci right 3.942125e-01	k: 1200675	n:3050000
KS ci ratio: 1.853960e-01	ci left: 1.329724e-04	ci right 1.604504e-04	k: 446	n:3050000
FAT4   3050000 perm   5156 sec   (592 perm/sec)   p_kst 1.462295e-04   p_cons 3.936639e-01   p_joint 3.495082e-04

Joint ci ratio: 1.196492e-01	ci left: 3.296701e-04	ci right 3.719384e-04	k: 1072	n:3060000
Cons ci ratio: 2.781183e-03	ci left: 3.931048e-01	ci right 3.942000e-01	k: 1204576	n:3060000
KS ci ratio: 1.847770e-01	ci left: 1.334728e-04	ci right 1.609518e-04	k: 449	n:3060000
FAT4   3060000 perm   5185 sec   (590 perm/sec)   p_kst 1.467320e-04   p_cons 3.936523e-01   p_joint 3.503268e-04

Joint ci ratio: 1.194268e-01	ci left: 3.298603e-04	ci right 3.720687e-04	k: 1076	n:3070000
Cons ci ratio: 2.776590e-03	ci left: 3.931160e-01	ci right 3.942093e-01	k: 1208544	n:3070000
KS ci ratio: 1.845720e-01	ci left: 1.333487e-04	ci right 1.607683e-04	k: 450	n:3070000
FAT4   3070000 perm   5214 sec   (589 perm/sec)   p_kst 1.465798e-04   p_cons 3.936625e-01   p_joint 3.504886e-04

Joint ci ratio: 1.192609e-01	ci left: 3.297342e-04	ci right 3.718638e-04	k: 1079	n:3080000
Cons ci ratio: 2.771924e-03	ci left: 3.931436e-01	ci right 3.942352e-01	k: 1212563	n:3080000
KS ci ratio: 1.841641e-01	ci left: 1.335352e-04	ci right 1.609256e-04	k: 452	n:3080000
FAT4   3080000 perm   5243 sec   (587 perm/sec)   p_kst 1.467532e-04   p_cons 3.936893e-01   p_joint 3.503247e-04

Joint ci ratio: 1.195937e-01	ci left: 3.267834e-04	ci right 3.686607e-04	k: 1073	n:3090000
Cons ci ratio: 2.767600e-03	ci left: 3.931160e-01	ci right 3.942058e-01	k: 1216412	n:3090000
KS ci ratio: 1.841641e-01	ci left: 1.331030e-04	ci right 1.604048e-04	k: 452	n:3090000
FAT4   3090000 perm   5272 sec   (586 perm/sec)   p_kst 1.462783e-04   p_cons 3.936608e-01   p_joint 3.472492e-04

Joint ci ratio: 1.193716e-01	ci left: 3.269810e-04	ci right 3.688003e-04	k: 1077	n:3100000
Cons ci ratio: 2.763122e-03	ci left: 3.931187e-01	ci right 3.942067e-01	k: 1220354	n:3100000
KS ci ratio: 1.839612e-01	ci left: 1.329814e-04	ci right 1.602248e-04	k: 453	n:3100000
FAT4   3100000 perm   5301 sec   (585 perm/sec)   p_kst 1.461290e-04   p_cons 3.936626e-01   p_joint 3.474194e-04

Joint ci ratio: 1.191508e-01	ci left: 3.271774e-04	ci right 3.689390e-04	k: 1081	n:3110000
Cons ci ratio: 2.758640e-03	ci left: 3.931258e-01	ci right 3.942121e-01	k: 1224310	n:3110000
KS ci ratio: 1.837590e-01	ci left: 1.328605e-04	ci right 1.600460e-04	k: 454	n:3110000
FAT4   3110000 perm   5330 sec   (584 perm/sec)   p_kst 1.459807e-04   p_cons 3.936688e-01   p_joint 3.475884e-04

Joint ci ratio: 1.190408e-01	ci left: 3.267507e-04	ci right 3.684166e-04	k: 1083	n:3120000
Cons ci ratio: 2.754132e-03	ci left: 3.931412e-01	ci right 3.942257e-01	k: 1228292	n:3120000
KS ci ratio: 1.833564e-01	ci left: 1.330463e-04	ci right 1.602034e-04	k: 456	n:3120000
FAT4   3120000 perm   5359 sec   (582 perm/sec)   p_kst 1.461538e-04   p_cons 3.936833e-01   p_joint 3.471154e-04

Joint ci ratio: 1.188218e-01	ci left: 3.269467e-04	ci right 3.685555e-04	k: 1087	n:3130000
Cons ci ratio: 2.749664e-03	ci left: 3.931533e-01	ci right 3.942361e-01	k: 1232264	n:3130000
KS ci ratio: 1.831561e-01	ci left: 1.329260e-04	ci right 1.600257e-04	k: 457	n:3130000
FAT4   3130000 perm   5387 sec   (581 perm/sec)   p_kst 1.460064e-04   p_cons 3.936946e-01   p_joint 3.472843e-04

Joint ci ratio: 1.195384e-01	ci left: 3.218887e-04	ci right 3.631183e-04	k: 1074	n:3140000
Cons ci ratio: 2.745196e-03	ci left: 3.931691e-01	ci right 3.942502e-01	k: 1236248	n:3140000
KS ci ratio: 1.829565e-01	ci left: 1.328066e-04	ci right 1.598491e-04	k: 458	n:3140000
FAT4   3140000 perm   5417 sec   (580 perm/sec)   p_kst 1.458599e-04   p_cons 3.937096e-01   p_joint 3.420382e-04

Joint ci ratio: 1.194274e-01	ci left: 3.214828e-04	ci right 3.626195e-04	k: 1076	n:3150000
Cons ci ratio: 2.740802e-03	ci left: 3.931756e-01	ci right 3.942550e-01	k: 1240203	n:3150000
KS ci ratio: 1.827576e-01	ci left: 1.326879e-04	ci right 1.596737e-04	k: 459	n:3150000
FAT4   3150000 perm   5446 sec   (578 perm/sec)   p_kst 1.457143e-04   p_cons 3.937152e-01   p_joint 3.415873e-04

Joint ci ratio: 1.191511e-01	ci left: 3.220005e-04	ci right 3.631014e-04	k: 1081	n:3160000
Cons ci ratio: 2.736376e-03	ci left: 3.931916e-01	ci right 3.942693e-01	k: 1244188	n:3160000
KS ci ratio: 1.821645e-01	ci left: 1.331740e-04	ci right 1.601610e-04	k: 462	n:3160000
FAT4   3160000 perm   5475 sec   (577 perm/sec)   p_kst 1.462025e-04   p_cons 3.937304e-01   p_joint 3.420886e-04

Joint ci ratio: 1.189863e-01	ci left: 3.219029e-04	ci right 3.629305e-04	k: 1084	n:3170000
Cons ci ratio: 2.732152e-03	ci left: 3.931757e-01	ci right 3.942517e-01	k: 1248072	n:3170000
KS ci ratio: 1.819681e-01	ci left: 1.330550e-04	ci right 1.599856e-04	k: 463	n:3170000
FAT4   3170000 perm   5505 sec   (576 perm/sec)   p_kst 1.460568e-04   p_cons 3.937136e-01   p_joint 3.419558e-04

Joint ci ratio: 1.196500e-01	ci left: 3.172296e-04	ci right 3.579031e-04	k: 1072	n:3180000
Cons ci ratio: 2.727828e-03	ci left: 3.931809e-01	ci right 3.942552e-01	k: 1252023	n:3180000
KS ci ratio: 1.815772e-01	ci left: 1.332369e-04	ci right 1.601400e-04	k: 465	n:3180000
FAT4   3180000 perm   5534 sec   (575 perm/sec)   p_kst 1.462264e-04   p_cons 3.937179e-01   p_joint 3.371069e-04

Joint ci ratio: 1.194831e-01	ci left: 3.171475e-04	ci right 3.577497e-04	k: 1075	n:3190000
Cons ci ratio: 2.723453e-03	ci left: 3.931986e-01	ci right 3.942712e-01	k: 1256014	n:3190000
KS ci ratio: 1.811887e-01	ci left: 1.334177e-04	ci right 1.602934e-04	k: 467	n:3190000
FAT4   3190000 perm   5564 sec   (573 perm/sec)   p_kst 1.463950e-04   p_cons 3.937348e-01   p_joint 3.369906e-04

Joint ci ratio: 1.192065e-01	ci left: 3.176723e-04	ci right 3.582409e-04	k: 1080	n:3200000
Cons ci ratio: 2.719102e-03	ci left: 3.932156e-01	ci right 3.942865e-01	k: 1260003	n:3200000
KS ci ratio: 1.808028e-01	ci left: 1.335975e-04	ci right 1.604458e-04	k: 469	n:3200000
FAT4   3200000 perm   5593 sec   (572 perm/sec)   p_kst 1.465625e-04   p_cons 3.937509e-01   p_joint 3.375000e-04

Joint ci ratio: 1.198740e-01	ci left: 3.130560e-04	ci right 3.532749e-04	k: 1068	n:3210000
Cons ci ratio: 2.714902e-03	ci left: 3.932097e-01	ci right 3.942790e-01	k: 1263919	n:3210000
KS ci ratio: 1.804193e-01	ci left: 1.337762e-04	ci right 1.605971e-04	k: 471	n:3210000
FAT4   3210000 perm   5623 sec   (571 perm/sec)   p_kst 1.467290e-04   p_cons 3.937442e-01   p_joint 3.327103e-04

Joint ci ratio: 1.195389e-01	ci left: 3.138914e-04	ci right 3.540968e-04	k: 1074	n:3220000
Cons ci ratio: 2.710613e-03	ci left: 3.932228e-01	ci right 3.942904e-01	k: 1267896	n:3220000
KS ci ratio: 1.798486e-01	ci left: 1.342504e-04	ci right 1.610720e-04	k: 474	n:3220000
FAT4   3220000 perm   5652 sec   (570 perm/sec)   p_kst 1.472050e-04   p_cons 3.937565e-01   p_joint 3.335404e-04

Joint ci ratio: 1.194279e-01	ci left: 3.135203e-04	ci right 3.536383e-04	k: 1076	n:3230000
Cons ci ratio: 2.706334e-03	ci left: 3.932377e-01	ci right 3.943037e-01	k: 1271879	n:3230000
KS ci ratio: 1.798487e-01	ci left: 1.338347e-04	ci right 1.605734e-04	k: 474	n:3230000
FAT4   3230000 perm   5682 sec   (568 perm/sec)   p_kst 1.467492e-04   p_cons 3.937706e-01   p_joint 3.331269e-04

Joint ci ratio: 1.191516e-01	ci left: 3.140498e-04	ci right 3.541360e-04	k: 1081	n:3240000
Cons ci ratio: 2.702344e-03	ci left: 3.932050e-01	ci right 3.942693e-01	k: 1275708	n:3240000
KS ci ratio: 1.794712e-01	ci left: 1.340112e-04	ci right 1.607228e-04	k: 476	n:3240000
FAT4   3240000 perm   5712 sec   (567 perm/sec)   p_kst 1.469136e-04   p_cons 3.937370e-01   p_joint 3.336420e-04

Joint ci ratio: 1.194280e-01	ci left: 3.115909e-04	ci right 3.514621e-04	k: 1076	n:3250000
Cons ci ratio: 2.698153e-03	ci left: 3.932112e-01	ci right 3.942739e-01	k: 1279663	n:3250000
KS ci ratio: 1.792834e-01	ci left: 1.338927e-04	ci right 1.605497e-04	k: 477	n:3250000
FAT4   3250000 perm   5742 sec   (566 perm/sec)   p_kst 1.467692e-04   p_cons 3.937425e-01   p_joint 3.310769e-04

Joint ci ratio: 1.220049e-01	ci left: 2.972481e-04	ci right 3.361639e-04	k: 1031	n:3260000
Cons ci ratio: 2.693931e-03	ci left: 3.932263e-01	ci right 3.942874e-01	k: 1283647	n:3260000
KS ci ratio: 1.792835e-01	ci left: 1.334820e-04	ci right 1.600573e-04	k: 477	n:3260000
FAT4   3260000 perm   5773 sec   (565 perm/sec)   p_kst 1.463190e-04   p_cons 3.937567e-01   p_joint 3.162577e-04

Joint ci ratio: 1.237568e-01	ci left: 2.877430e-04	ci right 3.259950e-04	k: 1002	n:3270000
Cons ci ratio: 2.689839e-03	ci left: 3.932218e-01	ci right 3.942812e-01	k: 1287567	n:3270000
KS ci ratio: 1.790962e-01	ci left: 1.333659e-04	ci right 1.598873e-04	k: 478	n:3270000
FAT4   3270000 perm   5803 sec   (564 perm/sec)   p_kst 1.461774e-04   p_cons 3.937514e-01   p_joint 3.064220e-04

Joint ci ratio: 1.236336e-01	ci left: 2.874567e-04	ci right 3.256297e-04	k: 1004	n:3280000
Cons ci ratio: 2.685762e-03	ci left: 3.932178e-01	ci right 3.942756e-01	k: 1291489	n:3280000
KS ci ratio: 1.790963e-01	ci left: 1.329593e-04	ci right 1.593998e-04	k: 478	n:3280000
FAT4   3280000 perm   5833 sec   (562 perm/sec)   p_kst 1.457317e-04   p_cons 3.937466e-01   p_joint 3.060976e-04

Joint ci ratio: 1.233883e-01	ci left: 2.877612e-04	ci right 3.258933e-04	k: 1008	n:3290000
Cons ci ratio: 2.681608e-03	ci left: 3.932310e-01	ci right 3.942872e-01	k: 1295467	n:3290000
KS ci ratio: 1.787235e-01	ci left: 1.331358e-04	ci right 1.595504e-04	k: 480	n:3290000
FAT4   3290000 perm   5863 sec   (561 perm/sec)   p_kst 1.458967e-04   p_cons 3.937590e-01   p_joint 3.063830e-04

Joint ci ratio: 1.232662e-01	ci left: 2.874765e-04	ci right 3.255305e-04	k: 1010	n:3300000
Cons ci ratio: 2.677590e-03	ci left: 3.932231e-01	ci right 3.942777e-01	k: 1299376	n:3300000
KS ci ratio: 1.785380e-01	ci left: 1.330219e-04	ci right 1.593835e-04	k: 481	n:3300000
FAT4   3300000 perm   5893 sec   (560 perm/sec)   p_kst 1.457576e-04   p_cons 3.937503e-01   p_joint 3.060606e-04

Joint ci ratio: 1.232662e-01	ci left: 2.866080e-04	ci right 3.245470e-04	k: 1010	n:3310000
Cons ci ratio: 2.673474e-03	ci left: 3.932361e-01	ci right 3.942891e-01	k: 1303354	n:3310000
KS ci ratio: 1.785381e-01	ci left: 1.326200e-04	ci right 1.589020e-04	k: 481	n:3310000
FAT4   3310000 perm   5924 sec   (559 perm/sec)   p_kst 1.453172e-04   p_cons 3.937625e-01   p_joint 3.051360e-04

Joint ci ratio: 1.230231e-01	ci left: 2.869124e-04	ci right 3.248114e-04	k: 1014	n:3320000
Cons ci ratio: 2.669363e-03	ci left: 3.932515e-01	ci right 3.943029e-01	k: 1307340	n:3320000
KS ci ratio: 1.783532e-01	ci left: 1.325083e-04	ci right 1.587380e-04	k: 482	n:3320000
FAT4   3320000 perm   5954 sec   (558 perm/sec)   p_kst 1.451807e-04   p_cons 3.937771e-01   p_joint 3.054217e-04

Joint ci ratio: 1.229021e-01	ci left: 2.866330e-04	ci right 3.244551e-04	k: 1016	n:3330000
Cons ci ratio: 2.665367e-03	ci left: 3.932496e-01	ci right 3.942995e-01	k: 1311269	n:3330000
KS ci ratio: 1.779850e-01	ci left: 1.326842e-04	ci right 1.588887e-04	k: 484	n:3330000
FAT4   3330000 perm   5984 sec   (556 perm/sec)   p_kst 1.453453e-04   p_cons 3.937745e-01   p_joint 3.051051e-04

Joint ci ratio: 1.226010e-01	ci left: 2.872258e-04	ci right 3.250266e-04	k: 1021	n:3340000
Cons ci ratio: 2.661380e-03	ci left: 3.932493e-01	ci right 3.942976e-01	k: 1315203	n:3340000
KS ci ratio: 1.778018e-01	ci left: 1.325730e-04	ci right 1.587257e-04	k: 485	n:3340000
FAT4   3340000 perm   6015 sec   (555 perm/sec)   p_kst 1.452096e-04   p_cons 3.937734e-01   p_joint 3.056886e-04

Joint ci ratio: 1.224813e-01	ci left: 2.869472e-04	ci right 3.246717e-04	k: 1023	n:3350000
Cons ci ratio: 2.657351e-03	ci left: 3.932597e-01	ci right 3.943064e-01	k: 1319173	n:3350000
KS ci ratio: 1.778019e-01	ci left: 1.321773e-04	ci right 1.582519e-04	k: 485	n:3350000
FAT4   3350000 perm   6046 sec   (554 perm/sec)   p_kst 1.447761e-04   p_cons 3.937830e-01   p_joint 3.053731e-04

Joint ci ratio: 1.223022e-01	ci left: 2.869587e-04	ci right 3.246256e-04	k: 1026	n:3360000
Cons ci ratio: 2.653415e-03	ci left: 3.932567e-01	ci right 3.943018e-01	k: 1323098	n:3360000
KS ci ratio: 1.778019e-01	ci left: 1.317839e-04	ci right 1.577809e-04	k: 485	n:3360000
FAT4   3360000 perm   6076 sec   (553 perm/sec)   p_kst 1.443452e-04   p_cons 3.937792e-01   p_joint 3.053571e-04

Joint ci ratio: 1.221833e-01	ci left: 2.866825e-04	ci right 3.242739e-04	k: 1028	n:3370000
Cons ci ratio: 2.649388e-03	ci left: 3.932733e-01	ci right 3.943168e-01	k: 1327089	n:3370000
KS ci ratio: 1.778020e-01	ci left: 1.313928e-04	ci right 1.573127e-04	k: 485	n:3370000
FAT4   3370000 perm   6107 sec   (552 perm/sec)   p_kst 1.439169e-04   p_cons 3.937950e-01   p_joint 3.050445e-04

Joint ci ratio: 1.220648e-01	ci left: 2.864079e-04	ci right 3.239243e-04	k: 1030	n:3380000
Cons ci ratio: 2.645525e-03	ci left: 3.932634e-01	ci right 3.943054e-01	k: 1330991	n:3380000
KS ci ratio: 1.776193e-01	ci left: 1.312868e-04	ci right 1.571563e-04	k: 486	n:3380000
FAT4   3380000 perm   6137 sec   (551 perm/sec)   p_kst 1.437870e-04   p_cons 3.937843e-01   p_joint 3.047337e-04

Joint ci ratio: 1.218876e-01	ci left: 2.864210e-04	ci right 3.238807e-04	k: 1033	n:3390000
Cons ci ratio: 2.641703e-03	ci left: 3.932492e-01	ci right 3.942897e-01	k: 1334878	n:3390000
KS ci ratio: 1.774373e-01	ci left: 1.311814e-04	ci right 1.570008e-04	k: 487	n:3390000
FAT4   3390000 perm   6168 sec   (550 perm/sec)   p_kst 1.436578e-04   p_cons 3.937693e-01   p_joint 3.047198e-04

Joint ci ratio: 1.217112e-01	ci left: 2.864341e-04	ci right 3.238373e-04	k: 1036	n:3400000
Cons ci ratio: 2.637729e-03	ci left: 3.932656e-01	ci right 3.943046e-01	k: 1338869	n:3400000
KS ci ratio: 1.772558e-01	ci left: 1.310766e-04	ci right 1.568462e-04	k: 488	n:3400000
FAT4   3400000 perm   6198 sec   (549 perm/sec)   p_kst 1.435294e-04   p_cons 3.937850e-01   p_joint 3.047059e-04

Joint ci ratio: 1.215940e-01	ci left: 2.861628e-04	ci right 3.234920e-04	k: 1038	n:3410000
Cons ci ratio: 2.633958e-03	ci left: 3.932482e-01	ci right 3.942857e-01	k: 1342745	n:3410000
KS ci ratio: 1.770748e-01	ci left: 1.309725e-04	ci right 1.566925e-04	k: 489	n:3410000
FAT4   3410000 perm   6228 sec   (548 perm/sec)   p_kst 1.434018e-04   p_cons 3.937669e-01   p_joint 3.043988e-04

Joint ci ratio: 1.214188e-01	ci left: 2.861766e-04	ci right 3.234500e-04	k: 1041	n:3420000
Cons ci ratio: 2.630093e-03	ci left: 3.932511e-01	ci right 3.942871e-01	k: 1346690	n:3420000
KS ci ratio: 1.768944e-01	ci left: 1.308690e-04	ci right 1.565397e-04	k: 490	n:3420000
FAT4   3420000 perm   6260 sec   (546 perm/sec)   p_kst 1.432749e-04   p_cons 3.937690e-01   p_joint 3.043860e-04

Joint ci ratio: 1.211864e-01	ci left: 2.864730e-04	ci right 3.237085e-04	k: 1045	n:3430000
Cons ci ratio: 2.626217e-03	ci left: 3.932590e-01	ci right 3.942934e-01	k: 1350652	n:3430000
KS ci ratio: 1.763564e-01	ci left: 1.313234e-04	ci right 1.569965e-04	k: 493	n:3430000
FAT4   3430000 perm   6291 sec   (545 perm/sec)   p_kst 1.437318e-04   p_cons 3.937761e-01   p_joint 3.046647e-04

Joint ci ratio: 1.209553e-01	ci left: 2.867678e-04	ci right 3.239655e-04	k: 1049	n:3440000
Cons ci ratio: 2.622446e-03	ci left: 3.932508e-01	ci right 3.942837e-01	k: 1354559	n:3440000
KS ci ratio: 1.761782e-01	ci left: 1.312195e-04	ci right 1.568437e-04	k: 494	n:3440000
FAT4   3440000 perm   6321 sec   (544 perm/sec)   p_kst 1.436047e-04   p_cons 3.937672e-01   p_joint 3.049419e-04

Joint ci ratio: 1.207829e-01	ci left: 2.867799e-04	ci right 3.239223e-04	k: 1052	n:3450000
Cons ci ratio: 2.618423e-03	ci left: 3.932916e-01	ci right 3.943230e-01	k: 1358635	n:3450000
KS ci ratio: 1.760005e-01	ci left: 1.311162e-04	ci right 1.566917e-04	k: 495	n:3450000
FAT4   3450000 perm   6352 sec   (543 perm/sec)   p_kst 1.434783e-04   p_cons 3.938072e-01   p_joint 3.049275e-04

Joint ci ratio: 1.206112e-01	ci left: 2.867919e-04	ci right 3.238793e-04	k: 1055	n:3460000
Cons ci ratio: 2.614567e-03	ci left: 3.933051e-01	ci right 3.943350e-01	k: 1362617	n:3460000
KS ci ratio: 1.760006e-01	ci left: 1.307373e-04	ci right 1.562388e-04	k: 495	n:3460000
FAT4   3460000 perm   6384 sec   (542 perm/sec)   p_kst 1.430636e-04   p_cons 3.938199e-01   p_joint 3.049133e-04

Joint ci ratio: 1.217115e-01	ci left: 2.806558e-04	ci right 3.173047e-04	k: 1036	n:3470000
Cons ci ratio: 2.610720e-03	ci left: 3.933199e-01	ci right 3.943483e-01	k: 1366604	n:3470000
KS ci ratio: 1.758234e-01	ci left: 1.306360e-04	ci right 1.560894e-04	k: 496	n:3470000
FAT4   3470000 perm   6416 sec   (541 perm/sec)   p_kst 1.429395e-04   p_cons 3.938340e-01   p_joint 2.985591e-04

Joint ci ratio: 1.213609e-01	ci left: 2.815211e-04	ci right 3.181694e-04	k: 1042	n:3480000
Cons ci ratio: 2.606901e-03	ci left: 3.933326e-01	ci right 3.943596e-01	k: 1370584	n:3480000
KS ci ratio: 1.754707e-01	ci left: 1.308101e-04	ci right 1.562408e-04	k: 498	n:3480000
FAT4   3480000 perm   6448 sec   (540 perm/sec)   p_kst 1.431034e-04   p_cons 3.938460e-01   p_joint 2.994253e-04

Joint ci ratio: 1.212447e-01	ci left: 2.812701e-04	ci right 3.178482e-04	k: 1044	n:3490000
Cons ci ratio: 2.603117e-03	ci left: 3.933418e-01	ci right 3.943673e-01	k: 1374552	n:3490000
KS ci ratio: 1.754707e-01	ci left: 1.304353e-04	ci right 1.557931e-04	k: 498	n:3490000
FAT4   3490000 perm   6480 sec   (539 perm/sec)   p_kst 1.426934e-04   p_cons 3.938544e-01   p_joint 2.991404e-04

Joint ci ratio: 1.212448e-01	ci left: 2.804665e-04	ci right 3.169400e-04	k: 1044	n:3500000
Cons ci ratio: 2.599488e-03	ci left: 3.933255e-01	ci right 3.943495e-01	k: 1378431	n:3500000
KS ci ratio: 1.754708e-01	ci left: 1.300626e-04	ci right 1.553480e-04	k: 498	n:3500000
FAT4   3500000 perm   6513 sec   (537 perm/sec)   p_kst 1.422857e-04   p_cons 3.938374e-01   p_joint 2.982857e-04

Joint ci ratio: 1.215945e-01	ci left: 2.780099e-04	ci right 3.142758e-04	k: 1038	n:3510000
Cons ci ratio: 2.595864e-03	ci left: 3.933113e-01	ci right 3.943339e-01	k: 1382317	n:3510000
KS ci ratio: 1.751202e-01	ci left: 1.302368e-04	ci right 1.555002e-04	k: 500	n:3510000
FAT4   3510000 perm   6545 sec   (536 perm/sec)   p_kst 1.424501e-04   p_cons 3.938225e-01   p_joint 2.957265e-04

Joint ci ratio: 1.214777e-01	ci left: 2.777710e-04	ci right 3.139684e-04	k: 1040	n:3520000
Cons ci ratio: 2.592145e-03	ci left: 3.933174e-01	ci right 3.943385e-01	k: 1386274	n:3520000
KS ci ratio: 1.749457e-01	ci left: 1.301385e-04	ci right 1.553550e-04	k: 501	n:3520000
FAT4   3520000 perm   6577 sec   (535 perm/sec)   p_kst 1.423295e-04   p_cons 3.938278e-01   p_joint 2.954545e-04

Joint ci ratio: 1.219473e-01	ci left: 2.747868e-04	ci right 3.107438e-04	k: 1032	n:3530000
Cons ci ratio: 2.588370e-03	ci left: 3.933367e-01	ci right 3.943564e-01	k: 1390278	n:3530000
KS ci ratio: 1.749457e-01	ci left: 1.297698e-04	ci right 1.549149e-04	k: 501	n:3530000
FAT4   3530000 perm   6610 sec   (534 perm/sec)   p_kst 1.419263e-04   p_cons 3.938465e-01   p_joint 2.923513e-04

Joint ci ratio: 1.219474e-01	ci left: 2.740106e-04	ci right 3.098660e-04	k: 1032	n:3540000
Cons ci ratio: 2.584781e-03	ci left: 3.933246e-01	ci right 3.943428e-01	k: 1394171	n:3540000
KS ci ratio: 1.749457e-01	ci left: 1.294032e-04	ci right 1.544773e-04	k: 501	n:3540000
FAT4   3540000 perm   6643 sec   (533 perm/sec)   p_kst 1.415254e-04   p_cons 3.938336e-01   p_joint 2.915254e-04

Joint ci ratio: 1.214778e-01	ci left: 2.754236e-04	ci right 3.113152e-04	k: 1040	n:3550000
Cons ci ratio: 2.581169e-03	ci left: 3.933196e-01	ci right 3.943364e-01	k: 1398089	n:3550000
KS ci ratio: 1.742528e-01	ci left: 1.301163e-04	ci right 1.552181e-04	k: 505	n:3550000
FAT4   3550000 perm   6676 sec   (532 perm/sec)   p_kst 1.422535e-04   p_cons 3.938279e-01   p_joint 2.929577e-04

Joint ci ratio: 1.211871e-01	ci left: 2.760118e-04	ci right 3.118878e-04	k: 1045	n:3560000
Cons ci ratio: 2.577547e-03	ci left: 3.933191e-01	ci right 3.943345e-01	k: 1402023	n:3560000
KS ci ratio: 1.735681e-01	ci left: 1.308254e-04	ci right 1.559545e-04	k: 509	n:3560000
FAT4   3560000 perm   6708 sec   (531 perm/sec)   p_kst 1.429775e-04   p_cons 3.938267e-01   p_joint 2.935393e-04

Joint ci ratio: 1.209560e-01	ci left: 2.763252e-04	ci right 3.121685e-04	k: 1049	n:3570000
Cons ci ratio: 2.573964e-03	ci left: 3.933144e-01	ci right 3.943283e-01	k: 1405942	n:3570000
KS ci ratio: 1.733982e-01	ci left: 1.307269e-04	ci right 1.558099e-04	k: 510	n:3570000
FAT4   3570000 perm   6741 sec   (530 perm/sec)   p_kst 1.428571e-04   p_cons 3.938213e-01   p_joint 2.938375e-04

Joint ci ratio: 1.207836e-01	ci left: 2.763660e-04	ci right 3.121599e-04	k: 1052	n:3580000
Cons ci ratio: 2.570346e-03	ci left: 3.933190e-01	ci right 3.943315e-01	k: 1409894	n:3580000
KS ci ratio: 1.730598e-01	ci left: 1.308962e-04	ci right 1.559575e-04	k: 512	n:3580000
FAT4   3580000 perm   6774 sec   (528 perm/sec)   p_kst 1.430168e-04   p_cons 3.938251e-01   p_joint 2.938547e-04

Joint ci ratio: 1.206691e-01	ci left: 2.761365e-04	ci right 3.118643e-04	k: 1054	n:3590000
Cons ci ratio: 2.566791e-03	ci left: 3.933146e-01	ci right 3.943257e-01	k: 1413814	n:3590000
KS ci ratio: 1.728914e-01	ci left: 1.307981e-04	ci right 1.558137e-04	k: 513	n:3590000
FAT4   3590000 perm   6808 sec   (527 perm/sec)   p_kst 1.428969e-04   p_cons 3.938201e-01   p_joint 2.935933e-04

Joint ci ratio: 1.203841e-01	ci left: 2.767165e-04	ci right 3.124287e-04	k: 1059	n:3600000
Cons ci ratio: 2.563250e-03	ci left: 3.933102e-01	ci right 3.943199e-01	k: 1417734	n:3600000
KS ci ratio: 1.725560e-01	ci left: 1.309663e-04	ci right 1.559605e-04	k: 515	n:3600000
FAT4   3600000 perm   6841 sec   (526 perm/sec)   p_kst 1.430556e-04   p_cons 3.938150e-01   p_joint 2.941667e-04

Joint ci ratio: 1.132836e-01	ci left: 3.127924e-04	ci right 3.506205e-04	k: 1196	n:3610000
Cons ci ratio: 2.559756e-03	ci left: 3.933001e-01	ci right 3.943084e-01	k: 1421633	n:3610000
KS ci ratio: 1.723890e-01	ci left: 1.308686e-04	ci right 1.558174e-04	k: 516	n:3610000
FAT4   3610000 perm   6874 sec   (525 perm/sec)   p_kst 1.429363e-04   p_cons 3.938042e-01   p_joint 3.313019e-04

Joint ci ratio: 1.139522e-01	ci left: 3.081708e-04	ci right 3.456748e-04	k: 1182	n:3620000
Cons ci ratio: 2.556147e-03	ci left: 3.933140e-01	ci right 3.943209e-01	k: 1425619	n:3620000
KS ci ratio: 1.723891e-01	ci left: 1.305071e-04	ci right 1.553870e-04	k: 516	n:3620000
FAT4   3620000 perm   6907 sec   (524 perm/sec)   p_kst 1.425414e-04   p_cons 3.938174e-01   p_joint 3.265193e-04

Joint ci ratio: 1.137121e-01	ci left: 3.086600e-04	ci right 3.461391e-04	k: 1187	n:3630000
Cons ci ratio: 2.552652e-03	ci left: 3.933094e-01	ci right 3.943150e-01	k: 1429538	n:3630000
KS ci ratio: 1.718910e-01	ci left: 1.309384e-04	ci right 1.558209e-04	k: 519	n:3630000
FAT4   3630000 perm   6941 sec   (523 perm/sec)   p_kst 1.429752e-04   p_cons 3.938121e-01   p_joint 3.269972e-04

Joint ci ratio: 1.136165e-01	ci left: 3.083459e-04	ci right 3.457532e-04	k: 1189	n:3640000
Cons ci ratio: 2.549027e-03	ci left: 3.933318e-01	ci right 3.943360e-01	k: 1433555	n:3640000
KS ci ratio: 1.718911e-01	ci left: 1.305787e-04	ci right 1.553928e-04	k: 519	n:3640000
FAT4   3640000 perm   6976 sec   (522 perm/sec)   p_kst 1.425824e-04   p_cons 3.938338e-01   p_joint 3.266484e-04

Joint ci ratio: 1.136166e-01	ci left: 3.075011e-04	ci right 3.448060e-04	k: 1189	n:3650000
Cons ci ratio: 2.545554e-03	ci left: 3.933286e-01	ci right 3.943313e-01	k: 1437479	n:3650000
KS ci ratio: 1.717260e-01	ci left: 1.304831e-04	ci right 1.552528e-04	k: 520	n:3650000
FAT4   3650000 perm   7009 sec   (521 perm/sec)   p_kst 1.424658e-04   p_cons 3.938299e-01   p_joint 3.257534e-04

Joint ci ratio: 1.155261e-01	ci left: 2.963104e-04	ci right 3.329030e-04	k: 1150	n:3660000
Cons ci ratio: 2.542130e-03	ci left: 3.933188e-01	ci right 3.943202e-01	k: 1441379	n:3660000
KS ci ratio: 1.712337e-01	ci left: 1.309111e-04	ci right 1.556835e-04	k: 523	n:3660000
FAT4   3660000 perm   7044 sec   (520 perm/sec)   p_kst 1.428962e-04   p_cons 3.938194e-01   p_joint 3.142077e-04

Joint ci ratio: 1.154760e-01	ci left: 2.957676e-04	ci right 3.322763e-04	k: 1151	n:3670000
Cons ci ratio: 2.538612e-03	ci left: 3.933292e-01	ci right 3.943293e-01	k: 1445353	n:3670000
KS ci ratio: 1.712337e-01	ci left: 1.305544e-04	ci right 1.552593e-04	k: 523	n:3670000
FAT4   3670000 perm   7078 sec   (519 perm/sec)   p_kst 1.425068e-04   p_cons 3.938292e-01   p_joint 3.136240e-04

Joint ci ratio: 1.152261e-01	ci left: 2.962834e-04	ci right 3.327713e-04	k: 1156	n:3680000
Cons ci ratio: 2.535105e-03	ci left: 3.933404e-01	ci right 3.943391e-01	k: 1449330	n:3680000
KS ci ratio: 1.710706e-01	ci left: 1.304597e-04	ci right 1.551207e-04	k: 524	n:3680000
FAT4   3680000 perm   7112 sec   (517 perm/sec)   p_kst 1.423913e-04   p_cons 3.938397e-01   p_joint 3.141304e-04

Joint ci ratio: 1.150771e-01	ci left: 2.962701e-04	ci right 3.327058e-04	k: 1159	n:3690000
Cons ci ratio: 2.531625e-03	ci left: 3.933491e-01	ci right 3.943464e-01	k: 1453298	n:3690000
KS ci ratio: 1.707457e-01	ci left: 1.306250e-04	ci right 1.552655e-04	k: 526	n:3690000
FAT4   3690000 perm   7146 sec   (516 perm/sec)   p_kst 1.425474e-04   p_cons 3.938477e-01   p_joint 3.140921e-04

Joint ci ratio: 1.148791e-01	ci left: 2.965193e-04	ci right 3.329188e-04	k: 1163	n:3700000
Cons ci ratio: 2.528184e-03	ci left: 3.933532e-01	ci right 3.943492e-01	k: 1457249	n:3700000
KS ci ratio: 1.702617e-01	ci left: 1.310481e-04	ci right 1.556913e-04	k: 529	n:3700000
FAT4   3700000 perm   7180 sec   (515 perm/sec)   p_kst 1.429730e-04   p_cons 3.938511e-01   p_joint 3.143243e-04

Joint ci ratio: 1.146823e-01	ci left: 2.967673e-04	ci right 3.331306e-04	k: 1167	n:3710000
Cons ci ratio: 2.524836e-03	ci left: 3.933421e-01	ci right 3.943368e-01	k: 1461144	n:3710000
KS ci ratio: 1.696228e-01	ci left: 1.317272e-04	ci right 1.563956e-04	k: 533	n:3710000
FAT4   3710000 perm   7214 sec   (514 perm/sec)   p_kst 1.436658e-04   p_cons 3.938394e-01   p_joint 3.145553e-04

Joint ci ratio: 1.145842e-01	ci left: 2.964918e-04	ci right 3.327881e-04	k: 1169	n:3720000
Cons ci ratio: 2.521351e-03	ci left: 3.933596e-01	ci right 3.943529e-01	k: 1465145	n:3720000
KS ci ratio: 1.694642e-01	ci left: 1.316305e-04	ci right 1.562554e-04	k: 534	n:3720000
FAT4   3720000 perm   7250 sec   (513 perm/sec)   p_kst 1.435484e-04   p_cons 3.938562e-01   p_joint 3.142473e-04

Joint ci ratio: 1.144864e-01	ci left: 2.962177e-04	ci right 3.324474e-04	k: 1171	n:3730000
Cons ci ratio: 2.517952e-03	ci left: 3.933636e-01	ci right 3.943556e-01	k: 1469096	n:3730000
KS ci ratio: 1.689910e-01	ci left: 1.320479e-04	ci right 1.566748e-04	k: 537	n:3730000
FAT4   3730000 perm   7285 sec   (512 perm/sec)   p_kst 1.439678e-04   p_cons 3.938595e-01   p_joint 3.139410e-04

Joint ci ratio: 1.147315e-01	ci left: 2.941271e-04	ci right 3.301834e-04	k: 1166	n:3740000
Cons ci ratio: 2.514626e-03	ci left: 3.933561e-01	ci right 3.943467e-01	k: 1473004	n:3740000
KS ci ratio: 1.689910e-01	ci left: 1.316948e-04	ci right 1.562559e-04	k: 537	n:3740000
FAT4   3740000 perm   7319 sec   (511 perm/sec)   p_kst 1.435829e-04   p_cons 3.938513e-01   p_joint 3.117647e-04

Joint ci ratio: 1.144377e-01	ci left: 2.948969e-04	ci right 3.309487e-04	k: 1172	n:3750000
Cons ci ratio: 2.511078e-03	ci left: 3.933934e-01	ci right 3.943827e-01	k: 1477080	n:3750000
KS ci ratio: 1.689911e-01	ci left: 1.313436e-04	ci right 1.558392e-04	k: 537	n:3750000
FAT4   3750000 perm   7353 sec   (510 perm/sec)   p_kst 1.432000e-04   p_cons 3.938880e-01   p_joint 3.125333e-04

Joint ci ratio: 1.142431e-01	ci left: 2.951460e-04	ci right 3.311628e-04	k: 1176	n:3760000
Cons ci ratio: 2.507843e-03	ci left: 3.933739e-01	ci right 3.943619e-01	k: 1480943	n:3760000
KS ci ratio: 1.685218e-01	ci left: 1.317585e-04	ci right 1.562563e-04	k: 540	n:3760000
FAT4   3760000 perm   7387 sec   (509 perm/sec)   p_kst 1.436170e-04   p_cons 3.938678e-01   p_joint 3.127660e-04

Joint ci ratio: 1.146335e-01	ci left: 2.923018e-04	ci right 3.281016e-04	k: 1168	n:3770000
Cons ci ratio: 2.504481e-03	ci left: 3.933810e-01	ci right 3.943677e-01	k: 1484906	n:3770000
KS ci ratio: 1.680565e-01	ci left: 1.321712e-04	ci right 1.566710e-04	k: 543	n:3770000
FAT4   3770000 perm   7422 sec   (508 perm/sec)   p_kst 1.440318e-04   p_cons 3.938743e-01   p_joint 3.098143e-04

Joint ci ratio: 1.144867e-01	ci left: 2.922994e-04	ci right 3.280500e-04	k: 1171	n:3780000
Cons ci ratio: 2.501193e-03	ci left: 3.933764e-01	ci right 3.943618e-01	k: 1488825	n:3780000
KS ci ratio: 1.680565e-01	ci left: 1.318216e-04	ci right 1.562565e-04	k: 543	n:3780000
FAT4   3780000 perm   7457 sec   (507 perm/sec)   p_kst 1.436508e-04   p_cons 3.938690e-01   p_joint 3.097884e-04

Joint ci ratio: 1.143891e-01	ci left: 2.920408e-04	ci right 3.277273e-04	k: 1173	n:3790000
Cons ci ratio: 2.497792e-03	ci left: 3.933962e-01	ci right 3.943803e-01	k: 1492836	n:3790000
KS ci ratio: 1.680565e-01	ci left: 1.314737e-04	ci right 1.558443e-04	k: 543	n:3790000
FAT4   3790000 perm   7493 sec   (506 perm/sec)   p_kst 1.432718e-04   p_cons 3.938881e-01   p_joint 3.094987e-04

Joint ci ratio: 1.142432e-01	ci left: 2.920392e-04	ci right 3.276769e-04	k: 1176	n:3800000
Cons ci ratio: 2.494584e-03	ci left: 3.933813e-01	ci right 3.943641e-01	k: 1496716	n:3800000
KS ci ratio: 1.675950e-01	ci left: 1.318841e-04	ci right 1.562567e-04	k: 546	n:3800000
FAT4   3800000 perm   7527 sec   (505 perm/sec)   p_kst 1.436842e-04   p_cons 3.938726e-01   p_joint 3.094737e-04

Joint ci ratio: 1.142433e-01	ci left: 2.912727e-04	ci right 3.268168e-04	k: 1176	n:3810000
Cons ci ratio: 2.491331e-03	ci left: 3.933776e-01	ci right 3.943591e-01	k: 1500638	n:3810000
KS ci ratio: 1.675950e-01	ci left: 1.315379e-04	ci right 1.558466e-04	k: 546	n:3810000
FAT4   3810000 perm   7561 sec   (504 perm/sec)   p_kst 1.433071e-04   p_cons 3.938682e-01   p_joint 3.086614e-04

Joint ci ratio: 1.141464e-01	ci left: 2.910188e-04	ci right 3.264998e-04	k: 1178	n:3820000
Cons ci ratio: 2.487984e-03	ci left: 3.933943e-01	ci right 3.943745e-01	k: 1504638	n:3820000
KS ci ratio: 1.674421e-01	ci left: 1.314444e-04	ci right 1.557114e-04	k: 547	n:3820000
FAT4   3820000 perm   7595 sec   (503 perm/sec)   p_kst 1.431937e-04   p_cons 3.938843e-01   p_joint 3.083770e-04

Joint ci ratio: 1.139532e-01	ci left: 2.912735e-04	ci right 3.267215e-04	k: 1182	n:3830000
Cons ci ratio: 2.484760e-03	ci left: 3.933900e-01	ci right 3.943689e-01	k: 1508558	n:3830000
KS ci ratio: 1.674421e-01	ci left: 1.311012e-04	ci right 1.553048e-04	k: 547	n:3830000
FAT4   3830000 perm   7630 sec   (502 perm/sec)   p_kst 1.428198e-04   p_cons 3.938794e-01   p_joint 3.086162e-04

Joint ci ratio: 1.137610e-01	ci left: 2.915270e-04	ci right 3.269420e-04	k: 1186	n:3840000
Cons ci ratio: 2.481411e-03	ci left: 3.934120e-01	ci right 3.943897e-01	k: 1512579	n:3840000
KS ci ratio: 1.671374e-01	ci left: 1.312588e-04	ci right 1.554430e-04	k: 549	n:3840000
FAT4   3840000 perm   7666 sec   (501 perm/sec)   p_kst 1.429688e-04   p_cons 3.939008e-01   p_joint 3.088542e-04

Joint ci ratio: 1.136175e-01	ci left: 2.915269e-04	ci right 3.268941e-04	k: 1189	n:3850000
Cons ci ratio: 2.478103e-03	ci left: 3.934288e-01	ci right 3.944052e-01	k: 1516580	n:3850000
KS ci ratio: 1.671374e-01	ci left: 1.309179e-04	ci right 1.550393e-04	k: 549	n:3850000
FAT4   3850000 perm   7702 sec   (500 perm/sec)   p_kst 1.425974e-04   p_cons 3.939169e-01   p_joint 3.088312e-04

Joint ci ratio: 1.135699e-01	ci left: 2.910233e-04	ci right 3.263137e-04	k: 1190	n:3860000
Cons ci ratio: 2.474967e-03	ci left: 3.934146e-01	ci right 3.943897e-01	k: 1520462	n:3860000
KS ci ratio: 1.671374e-01	ci left: 1.305787e-04	ci right 1.546376e-04	k: 549	n:3860000
FAT4   3860000 perm   7737 sec   (499 perm/sec)   p_kst 1.422280e-04   p_cons 3.939021e-01   p_joint 3.082902e-04

Joint ci ratio: 1.149788e-01	ci left: 2.829919e-04	ci right 3.177629e-04	k: 1161	n:3870000
Cons ci ratio: 2.471764e-03	ci left: 3.934160e-01	ci right 3.943899e-01	k: 1524404	n:3870000
KS ci ratio: 1.671375e-01	ci left: 1.302413e-04	ci right 1.542380e-04	k: 549	n:3870000
FAT4   3870000 perm   7773 sec   (498 perm/sec)   p_kst 1.418605e-04   p_cons 3.939028e-01   p_joint 3.000000e-04

Joint ci ratio: 1.148800e-01	ci left: 2.827632e-04	ci right 3.174743e-04	k: 1163	n:3880000
Cons ci ratio: 2.468612e-03	ci left: 3.934096e-01	ci right 3.943823e-01	k: 1528316	n:3880000
KS ci ratio: 1.669857e-01	ci left: 1.301526e-04	ci right 1.541090e-04	k: 550	n:3880000
FAT4   3880000 perm   7808 sec   (497 perm/sec)   p_kst 1.417526e-04   p_cons 3.938959e-01   p_joint 2.997423e-04

Joint ci ratio: 1.152770e-01	ci left: 2.800389e-04	ci right 3.145424e-04	k: 1155	n:3890000
Cons ci ratio: 2.465442e-03	ci left: 3.934093e-01	ci right 3.943806e-01	k: 1532251	n:3890000
KS ci ratio: 1.668344e-01	ci left: 1.300643e-04	ci right 1.539807e-04	k: 551	n:3890000
FAT4   3890000 perm   7843 sec   (496 perm/sec)   p_kst 1.416452e-04   p_cons 3.938949e-01   p_joint 2.969152e-04

Joint ci ratio: 1.151277e-01	ci left: 2.800679e-04	ci right 3.145273e-04	k: 1158	n:3900000
Cons ci ratio: 2.462228e-03	ci left: 3.934199e-01	ci right 3.943900e-01	k: 1536229	n:3900000
KS ci ratio: 1.666835e-01	ci left: 1.299765e-04	ci right 1.538529e-04	k: 552	n:3900000
FAT4   3900000 perm   7879 sec   (495 perm/sec)   p_kst 1.415385e-04   p_cons 3.939049e-01   p_joint 2.969231e-04

Joint ci ratio: 1.150781e-01	ci left: 2.796000e-04	ci right 3.139860e-04	k: 1159	n:3910000
Cons ci ratio: 2.458992e-03	ci left: 3.934371e-01	ci right 3.944060e-01	k: 1540233	n:3910000
KS ci ratio: 1.663829e-01	ci left: 1.301343e-04	ci right 1.539923e-04	k: 554	n:3910000
FAT4   3910000 perm   7915 sec   (494 perm/sec)   p_kst 1.416880e-04   p_cons 3.939215e-01   p_joint 2.964194e-04

Joint ci ratio: 1.150285e-01	ci left: 2.791345e-04	ci right 3.134475e-04	k: 1160	n:3920000
Cons ci ratio: 2.455827e-03	ci left: 3.934428e-01	ci right 3.944104e-01	k: 1544192	n:3920000
KS ci ratio: 1.662332e-01	ci left: 1.300468e-04	ci right 1.538651e-04	k: 555	n:3920000
FAT4   3920000 perm   7950 sec   (493 perm/sec)   p_kst 1.415816e-04   p_cons 3.939265e-01   p_joint 2.959184e-04

Joint ci ratio: 1.149791e-01	ci left: 2.786714e-04	ci right 3.129116e-04	k: 1161	n:3930000
Cons ci ratio: 2.452761e-03	ci left: 3.934316e-01	ci right 3.943980e-01	k: 1548085	n:3930000
KS ci ratio: 1.660839e-01	ci left: 1.299598e-04	ci right 1.537386e-04	k: 556	n:3930000
FAT4   3930000 perm   7986 sec   (492 perm/sec)   p_kst 1.414758e-04   p_cons 3.939148e-01   p_joint 2.954198e-04

Joint ci ratio: 1.156783e-01	ci left: 2.745132e-04	ci right 3.084617e-04	k: 1147	n:3940000
Cons ci ratio: 2.449765e-03	ci left: 3.934091e-01	ci right 3.943743e-01	k: 1551933	n:3940000
KS ci ratio: 1.659351e-01	ci left: 1.298732e-04	ci right 1.536128e-04	k: 557	n:3940000
FAT4   3940000 perm   8023 sec   (491 perm/sec)   p_kst 1.413706e-04   p_cons 3.938916e-01   p_joint 2.911168e-04

Joint ci ratio: 1.156279e-01	ci left: 2.740641e-04	ci right 3.079413e-04	k: 1148	n:3950000
Cons ci ratio: 2.446611e-03	ci left: 3.934199e-01	ci right 3.943838e-01	k: 1555912	n:3950000
KS ci ratio: 1.659351e-01	ci left: 1.295444e-04	ci right 1.532239e-04	k: 557	n:3950000
FAT4   3950000 perm   8060 sec   (490 perm/sec)   p_kst 1.410127e-04   p_cons 3.939018e-01   p_joint 2.906329e-04

Joint ci ratio: 1.155777e-01	ci left: 2.736172e-04	ci right 3.074235e-04	k: 1149	n:3960000
Cons ci ratio: 2.443487e-03	ci left: 3.934268e-01	ci right 3.943895e-01	k: 1559876	n:3960000
KS ci ratio: 1.659351e-01	ci left: 1.292173e-04	ci right 1.528370e-04	k: 557	n:3960000
FAT4   3960000 perm   8097 sec   (489 perm/sec)   p_kst 1.406566e-04   p_cons 3.939081e-01   p_joint 2.901515e-04

Joint ci ratio: 1.154773e-01	ci left: 2.734172e-04	ci right 3.071675e-04	k: 1151	n:3970000
Cons ci ratio: 2.440401e-03	ci left: 3.934286e-01	ci right 3.943902e-01	k: 1563820	n:3970000
KS ci ratio: 1.657866e-01	ci left: 1.291332e-04	ci right 1.527143e-04	k: 558	n:3970000
FAT4   3970000 perm   8134 sec   (488 perm/sec)   p_kst 1.405542e-04   p_cons 3.939093e-01   p_joint 2.899244e-04

Joint ci ratio: 1.154273e-01	ci left: 2.729743e-04	ci right 3.066542e-04	k: 1152	n:3980000
Cons ci ratio: 2.437384e-03	ci left: 3.934194e-01	ci right 3.943797e-01	k: 1567720	n:3980000
KS ci ratio: 1.657867e-01	ci left: 1.288088e-04	ci right 1.523306e-04	k: 558	n:3980000
FAT4   3980000 perm   8171 sec   (487 perm/sec)   p_kst 1.402010e-04   p_cons 3.938995e-01   p_joint 2.894472e-04

Joint ci ratio: 1.153273e-01	ci left: 2.727769e-04	ci right 3.064014e-04	k: 1154	n:3990000
Cons ci ratio: 2.434241e-03	ci left: 3.934371e-01	ci right 3.943962e-01	k: 1571727	n:3990000
KS ci ratio: 1.654909e-01	ci left: 1.289664e-04	ci right 1.524709e-04	k: 560	n:3990000
FAT4   3990000 perm   8207 sec   (486 perm/sec)   p_kst 1.403509e-04   p_cons 3.939165e-01   p_joint 2.892231e-04

Joint ci ratio: 1.153273e-01	ci left: 2.720950e-04	ci right 3.056354e-04	k: 1154	n:4000000
Cons ci ratio: 2.431130e-03	ci left: 3.934506e-01	ci right 3.944085e-01	k: 1575718	n:4000000
KS ci ratio: 1.654909e-01	ci left: 1.286440e-04	ci right 1.520897e-04	k: 560	n:4000000
FAT4   4000000 perm   8245 sec   (485 perm/sec)   p_kst 1.400000e-04   p_cons 3.939295e-01   p_joint 2.885000e-04

Joint ci ratio: 1.097215e-01	ci left: 3.007425e-04	ci right 3.358958e-04	k: 1275	n:4010000
Cons ci ratio: 2.427960e-03	ci left: 3.934781e-01	ci right 3.944348e-01	k: 1579765	n:4010000
KS ci ratio: 1.653436e-01	ci left: 1.285622e-04	ci right 1.519701e-04	k: 561	n:4010000
FAT4   4010000 perm   8281 sec   (484 perm/sec)   p_kst 1.399002e-04   p_cons 3.939564e-01   p_joint 3.179551e-04

Joint ci ratio: 1.095071e-01	ci left: 3.012041e-04	ci right 3.363381e-04	k: 1280	n:4020000
Cons ci ratio: 2.424944e-03	ci left: 3.934775e-01	ci right 3.944331e-01	k: 1583700	n:4020000
KS ci ratio: 1.653436e-01	ci left: 1.282424e-04	ci right 1.515921e-04	k: 561	n:4020000
FAT4   4020000 perm   8317 sec   (483 perm/sec)   p_kst 1.395522e-04   p_cons 3.939552e-01   p_joint 3.184080e-04

Joint ci ratio: 1.092940e-01	ci left: 3.016634e-04	ci right 3.367782e-04	k: 1285	n:4030000
Cons ci ratio: 2.421985e-03	ci left: 3.934681e-01	ci right 3.944224e-01	k: 1587599	n:4030000
KS ci ratio: 1.649041e-01	ci left: 1.286379e-04	ci right 1.519910e-04	k: 564	n:4030000
FAT4   4030000 perm   8354 sec   (482 perm/sec)   p_kst 1.399504e-04   p_cons 3.939452e-01   p_joint 3.188586e-04

Joint ci ratio: 1.099373e-01	ci left: 2.973056e-04	ci right 3.321300e-04	k: 1270	n:4040000
Cons ci ratio: 2.418996e-03	ci left: 3.934666e-01	ci right 3.944197e-01	k: 1591530	n:4040000
KS ci ratio: 1.646130e-01	ci left: 1.287941e-04	ci right 1.521303e-04	k: 566	n:4040000
FAT4   4040000 perm   8390 sec   (482 perm/sec)   p_kst 1.400990e-04   p_cons 3.939431e-01   p_joint 3.143564e-04

Joint ci ratio: 1.098941e-01	ci left: 2.968116e-04	ci right 3.315636e-04	k: 1271	n:4050000
Cons ci ratio: 2.416028e-03	ci left: 3.934631e-01	ci right 3.944151e-01	k: 1595453	n:4050000
KS ci ratio: 1.646130e-01	ci left: 1.284761e-04	ci right 1.517546e-04	k: 566	n:4050000
FAT4   4050000 perm   8426 sec   (481 perm/sec)   p_kst 1.397531e-04   p_cons 3.939390e-01   p_joint 3.138272e-04

Joint ci ratio: 1.106361e-01	ci left: 2.920088e-04	ci right 3.264444e-04	k: 1254	n:4060000
Cons ci ratio: 2.413129e-03	ci left: 3.934483e-01	ci right 3.943991e-01	k: 1599330	n:4060000
KS ci ratio: 1.643234e-01	ci left: 1.286320e-04	ci right 1.518937e-04	k: 568	n:4060000
FAT4   4060000 perm   8461 sec   (480 perm/sec)   p_kst 1.399015e-04   p_cons 3.939236e-01   p_joint 3.088670e-04

Joint ci ratio: 1.109461e-01	ci left: 2.896191e-04	ci right 3.238748e-04	k: 1247	n:4070000
Cons ci ratio: 2.410178e-03	ci left: 3.934459e-01	ci right 3.943955e-01	k: 1603257	n:4070000
KS ci ratio: 1.640354e-01	ci left: 1.287871e-04	ci right 1.520321e-04	k: 570	n:4070000
FAT4   4070000 perm   8497 sec   (479 perm/sec)   p_kst 1.400491e-04   p_cons 3.939206e-01   p_joint 3.063882e-04

Joint ci ratio: 1.109462e-01	ci left: 2.889092e-04	ci right 3.230810e-04	k: 1247	n:4080000
Cons ci ratio: 2.407256e-03	ci left: 3.934398e-01	ci right 3.943883e-01	k: 1607169	n:4080000
KS ci ratio: 1.640354e-01	ci left: 1.284715e-04	ci right 1.516595e-04	k: 570	n:4080000
FAT4   4080000 perm   8534 sec   (478 perm/sec)   p_kst 1.397059e-04   p_cons 3.939140e-01   p_joint 3.056373e-04

Joint ci ratio: 1.109462e-01	ci left: 2.882029e-04	ci right 3.222911e-04	k: 1247	n:4090000
Cons ci ratio: 2.404337e-03	ci left: 3.934352e-01	ci right 3.943825e-01	k: 1611087	n:4090000
KS ci ratio: 1.640354e-01	ci left: 1.281574e-04	ci right 1.512887e-04	k: 570	n:4090000
FAT4   4090000 perm   8570 sec   (477 perm/sec)   p_kst 1.393643e-04   p_cons 3.939088e-01   p_joint 3.048900e-04

Joint ci ratio: 1.108574e-01	ci left: 2.879742e-04	ci right 3.220063e-04	k: 1249	n:4100000
Cons ci ratio: 2.401482e-03	ci left: 3.934202e-01	ci right 3.943663e-01	k: 1614962	n:4100000
KS ci ratio: 1.638920e-01	ci left: 1.280787e-04	ci right 1.511736e-04	k: 571	n:4100000
FAT4   4100000 perm   8606 sec   (476 perm/sec)   p_kst 1.392683e-04   p_cons 3.938932e-01   p_joint 3.046341e-04

Joint ci ratio: 1.108131e-01	ci left: 2.875101e-04	ci right 3.214729e-04	k: 1250	n:4110000
Cons ci ratio: 2.398501e-03	ci left: 3.934322e-01	ci right 3.943772e-01	k: 1618948	n:4110000
KS ci ratio: 1.638920e-01	ci left: 1.277670e-04	ci right 1.508058e-04	k: 571	n:4110000
FAT4   4110000 perm   8643 sec   (476 perm/sec)   p_kst 1.389294e-04   p_cons 3.939046e-01   p_joint 3.041363e-04

Joint ci ratio: 1.107689e-01	ci left: 2.870482e-04	ci right 3.209421e-04	k: 1251	n:4120000
Cons ci ratio: 2.395536e-03	ci left: 3.934432e-01	ci right 3.943871e-01	k: 1622930	n:4120000
KS ci ratio: 1.637489e-01	ci left: 1.276897e-04	ci right 1.506924e-04	k: 572	n:4120000
FAT4   4120000 perm   8680 sec   (475 perm/sec)   p_kst 1.388350e-04   p_cons 3.939150e-01   p_joint 3.036408e-04

Joint ci ratio: 1.105924e-01	ci left: 2.872949e-04	ci right 3.211603e-04	k: 1255	n:4130000
Cons ci ratio: 2.392621e-03	ci left: 3.934464e-01	ci right 3.943891e-01	k: 1626880	n:4130000
KS ci ratio: 1.634639e-01	ci left: 1.278450e-04	ci right 1.508316e-04	k: 574	n:4130000
FAT4   4130000 perm   8717 sec   (474 perm/sec)   p_kst 1.389831e-04   p_cons 3.939177e-01   p_joint 3.038741e-04

Joint ci ratio: 1.104605e-01	ci left: 2.873056e-04	ci right 3.211292e-04	k: 1258	n:4140000
Cons ci ratio: 2.389724e-03	ci left: 3.934481e-01	ci right 3.943897e-01	k: 1630824	n:4140000
KS ci ratio: 1.633220e-01	ci left: 1.277678e-04	ci right 1.507187e-04	k: 575	n:4140000
FAT4   4140000 perm   8754 sec   (473 perm/sec)   p_kst 1.388889e-04   p_cons 3.939188e-01   p_joint 3.038647e-04

Joint ci ratio: 1.114388e-01	ci left: 2.814591e-04	ci right 3.149072e-04	k: 1236	n:4150000
Cons ci ratio: 2.386794e-03	ci left: 3.934585e-01	ci right 3.943990e-01	k: 1634804	n:4150000
KS ci ratio: 1.631804e-01	ci left: 1.276911e-04	ci right 1.506063e-04	k: 576	n:4150000
FAT4   4150000 perm   8793 sec   (472 perm/sec)   p_kst 1.387952e-04   p_cons 3.939287e-01   p_joint 2.978313e-04

Joint ci ratio: 1.112590e-01	ci left: 2.817173e-04	ci right 3.151385e-04	k: 1240	n:4160000
Cons ci ratio: 2.383961e-03	ci left: 3.934516e-01	ci right 3.943909e-01	k: 1638712	n:4160000
KS ci ratio: 1.631804e-01	ci left: 1.273841e-04	ci right 1.502443e-04	k: 576	n:4160000
FAT4   4160000 perm   8831 sec   (471 perm/sec)   p_kst 1.384615e-04   p_cons 3.939212e-01   p_joint 2.980769e-04

Joint ci ratio: 1.111248e-01	ci left: 2.817411e-04	ci right 3.151222e-04	k: 1243	n:4170000
Cons ci ratio: 2.381036e-03	ci left: 3.934650e-01	ci right 3.944032e-01	k: 1642705	n:4170000
KS ci ratio: 1.627578e-01	ci left: 1.277687e-04	ci right 1.506327e-04	k: 579	n:4170000
FAT4   4170000 perm   8868 sec   (470 perm/sec)   p_kst 1.388489e-04   p_cons 3.939341e-01   p_joint 2.980815e-04

Joint ci ratio: 1.109021e-01	ci left: 2.822301e-04	ci right 3.155977e-04	k: 1248	n:4180000
Cons ci ratio: 2.378233e-03	ci left: 3.934562e-01	ci right 3.943932e-01	k: 1646605	n:4180000
KS ci ratio: 1.624779e-01	ci left: 1.279221e-04	ci right 1.507703e-04	k: 581	n:4180000
FAT4   4180000 perm   8906 sec   (469 perm/sec)   p_kst 1.389952e-04   p_cons 3.939246e-01   p_joint 2.985646e-04

Joint ci ratio: 1.105486e-01	ci left: 2.834129e-04	ci right 3.168067e-04	k: 1256	n:4190000
Cons ci ratio: 2.375482e-03	ci left: 3.934390e-01	ci right 3.943750e-01	k: 1650470	n:4190000
KS ci ratio: 1.619224e-01	ci left: 1.285327e-04	ci right 1.514038e-04	k: 585	n:4190000
FAT4   4190000 perm   8944 sec   (468 perm/sec)   p_kst 1.396181e-04   p_cons 3.939069e-01   p_joint 2.997613e-04

Joint ci ratio: 1.104169e-01	ci left: 2.834327e-04	ci right 3.167864e-04	k: 1259	n:4200000
Cons ci ratio: 2.372734e-03	ci left: 3.934231e-01	ci right 3.943580e-01	k: 1654340	n:4200000
KS ci ratio: 1.616467e-01	ci left: 1.286835e-04	ci right 1.515388e-04	k: 587	n:4200000
FAT4   4200000 perm   8981 sec   (468 perm/sec)   p_kst 1.397619e-04   p_cons 3.938905e-01   p_joint 2.997619e-04

Joint ci ratio: 1.102420e-01	ci left: 2.836834e-04	ci right 3.170102e-04	k: 1263	n:4210000
Cons ci ratio: 2.369904e-03	ci left: 3.934259e-01	ci right 3.943596e-01	k: 1658288	n:4210000
KS ci ratio: 1.615095e-01	ci left: 1.286058e-04	ci right 1.514259e-04	k: 588	n:4210000
FAT4   4210000 perm   9018 sec   (467 perm/sec)   p_kst 1.396675e-04   p_cons 3.938926e-01   p_joint 3.000000e-04

Joint ci ratio: 1.100680e-01	ci left: 2.839329e-04	ci right 3.172330e-04	k: 1267	n:4220000
Cons ci ratio: 2.367138e-03	ci left: 3.934174e-01	ci right 3.943500e-01	k: 1662189	n:4220000
KS ci ratio: 1.613725e-01	ci left: 1.285284e-04	ci right 1.513136e-04	k: 589	n:4220000
FAT4   4220000 perm   9057 sec   (466 perm/sec)   p_kst 1.395735e-04   p_cons 3.938836e-01   p_joint 3.002370e-04

Joint ci ratio: 1.103732e-01	ci left: 2.816524e-04	ci right 3.147826e-04	k: 1260	n:4230000
Cons ci ratio: 2.364266e-03	ci left: 3.934327e-01	ci right 3.943642e-01	k: 1666190	n:4230000
KS ci ratio: 1.610997e-01	ci left: 1.286783e-04	ci right 1.514478e-04	k: 591	n:4230000
FAT4   4230000 perm   9093 sec   (465 perm/sec)   p_kst 1.397163e-04   p_cons 3.938983e-01   p_joint 2.978723e-04

Joint ci ratio: 1.101986e-01	ci left: 2.819055e-04	ci right 3.150096e-04	k: 1264	n:4240000
Cons ci ratio: 2.361546e-03	ci left: 3.934191e-01	ci right 3.943495e-01	k: 1670069	n:4240000
KS ci ratio: 1.606930e-01	ci left: 1.290539e-04	ci right 1.518266e-04	k: 594	n:4240000
FAT4   4240000 perm   9131 sec   (464 perm/sec)   p_kst 1.400943e-04   p_cons 3.938842e-01   p_joint 2.981132e-04

Joint ci ratio: 1.099381e-01	ci left: 2.826151e-04	ci right 3.157190e-04	k: 1270	n:4250000
Cons ci ratio: 2.358786e-03	ci left: 3.934157e-01	ci right 3.943450e-01	k: 1673991	n:4250000
KS ci ratio: 1.601556e-01	ci left: 1.296537e-04	ci right 1.524483e-04	k: 598	n:4250000
FAT4   4250000 perm   9170 sec   (463 perm/sec)   p_kst 1.407059e-04   p_cons 3.938802e-01   p_joint 2.988235e-04

Joint ci ratio: 1.098517e-01	ci left: 2.824083e-04	ci right 3.154603e-04	k: 1272	n:4260000
Cons ci ratio: 2.356014e-03	ci left: 3.934165e-01	ci right 3.943447e-01	k: 1677931	n:4260000
KS ci ratio: 1.600220e-01	ci left: 1.295746e-04	ci right 1.523346e-04	k: 599	n:4260000
FAT4   4260000 perm   9208 sec   (463 perm/sec)   p_kst 1.406103e-04   p_cons 3.938805e-01   p_joint 2.985915e-04

Joint ci ratio: 1.097225e-01	ci left: 2.824302e-04	ci right 3.154433e-04	k: 1275	n:4270000
Cons ci ratio: 2.353279e-03	ci left: 3.934119e-01	ci right 3.943390e-01	k: 1681848	n:4270000
KS ci ratio: 1.598889e-01	ci left: 1.294960e-04	ci right 1.522214e-04	k: 600	n:4270000
FAT4   4270000 perm   9247 sec   (462 perm/sec)   p_kst 1.405152e-04   p_cons 3.938754e-01   p_joint 2.985948e-04

Joint ci ratio: 1.096366e-01	ci left: 2.822248e-04	ci right 3.151864e-04	k: 1277	n:4280000
Cons ci ratio: 2.350676e-03	ci left: 3.933824e-01	ci right 3.943084e-01	k: 1685658	n:4280000
KS ci ratio: 1.596235e-01	ci left: 1.296420e-04	ci right 1.523517e-04	k: 602	n:4280000
FAT4   4280000 perm   9284 sec   (461 perm/sec)   p_kst 1.406542e-04   p_cons 3.938453e-01   p_joint 2.983645e-04

Joint ci ratio: 1.095510e-01	ci left: 2.820203e-04	ci right 3.149307e-04	k: 1279	n:4290000
Cons ci ratio: 2.347949e-03	ci left: 3.933800e-01	ci right 3.943050e-01	k: 1689584	n:4290000
KS ci ratio: 1.593594e-01	ci left: 1.297874e-04	ci right 1.524813e-04	k: 604	n:4290000
FAT4   4290000 perm   9322 sec   (460 perm/sec)   p_kst 1.407925e-04   p_cons 3.938424e-01   p_joint 2.981352e-04

Joint ci ratio: 1.094228e-01	ci left: 2.820430e-04	ci right 3.149151e-04	k: 1282	n:4300000
Cons ci ratio: 2.345066e-03	ci left: 3.934114e-01	ci right 3.943353e-01	k: 1693655	n:4300000
KS ci ratio: 1.593594e-01	ci left: 1.294856e-04	ci right 1.521267e-04	k: 604	n:4300000
FAT4   4300000 perm   9361 sec   (459 perm/sec)   p_kst 1.404651e-04   p_cons 3.938733e-01   p_joint 2.981395e-04

Joint ci ratio: 1.093802e-01	ci left: 2.816143e-04	ci right 3.144228e-04	k: 1283	n:4310000
Cons ci ratio: 2.342296e-03	ci left: 3.934217e-01	ci right 3.943445e-01	k: 1697636	n:4310000
KS ci ratio: 1.592279e-01	ci left: 1.294080e-04	ci right 1.520150e-04	k: 605	n:4310000
FAT4   4310000 perm   9400 sec   (459 perm/sec)   p_kst 1.403712e-04   p_cons 3.938831e-01   p_joint 2.976798e-04

Joint ci ratio: 1.092951e-01	ci left: 2.814127e-04	ci right 3.141706e-04	k: 1285	n:4320000
Cons ci ratio: 2.339706e-03	ci left: 3.933973e-01	ci right 3.943190e-01	k: 1701467	n:4320000
KS ci ratio: 1.590967e-01	ci left: 1.293307e-04	ci right 1.519038e-04	k: 606	n:4320000
FAT4   4320000 perm   9438 sec   (458 perm/sec)   p_kst 1.402778e-04   p_cons 3.938581e-01   p_joint 2.974537e-04

Joint ci ratio: 1.091679e-01	ci left: 2.814367e-04	ci right 3.141568e-04	k: 1288	n:4330000
Cons ci ratio: 2.337045e-03	ci left: 3.933892e-01	ci right 3.943098e-01	k: 1705368	n:4330000
KS ci ratio: 1.589658e-01	ci left: 1.292537e-04	ci right 1.517932e-04	k: 607	n:4330000
FAT4   4330000 perm   9478 sec   (457 perm/sec)   p_kst 1.401848e-04   p_cons 3.938494e-01   p_joint 2.974596e-04

Joint ci ratio: 1.091256e-01	ci left: 2.810124e-04	ci right 3.136696e-04	k: 1289	n:4340000
Cons ci ratio: 2.334370e-03	ci left: 3.933859e-01	ci right 3.943055e-01	k: 1709290	n:4340000
KS ci ratio: 1.587050e-01	ci left: 1.293984e-04	ci right 1.519225e-04	k: 609	n:4340000
FAT4   4340000 perm   9516 sec   (456 perm/sec)   p_kst 1.403226e-04   p_cons 3.938456e-01   p_joint 2.970046e-04

Joint ci ratio: 1.089147e-01	ci left: 2.814844e-04	ci right 3.141293e-04	k: 1294	n:4350000
Cons ci ratio: 2.331717e-03	ci left: 3.933799e-01	ci right 3.942984e-01	k: 1713200	n:4350000
KS ci ratio: 1.583161e-01	ci left: 1.297633e-04	ci right 1.522903e-04	k: 612	n:4350000
FAT4   4350000 perm   9556 sec   (455 perm/sec)   p_kst 1.406897e-04   p_cons 3.938391e-01   p_joint 2.974713e-04

Joint ci ratio: 1.087888e-01	ci left: 2.815082e-04	ci right 3.141156e-04	k: 1297	n:4360000
Cons ci ratio: 2.328937e-03	ci left: 3.934019e-01	ci right 3.943194e-01	k: 1717232	n:4360000
KS ci ratio: 1.579301e-01	ci left: 1.301265e-04	ci right 1.526563e-04	k: 615	n:4360000
FAT4   4360000 perm   9598 sec   (454 perm/sec)   p_kst 1.410550e-04   p_cons 3.938606e-01   p_joint 2.974771e-04

Joint ci ratio: 1.105053e-01	ci left: 2.719616e-04	ci right 3.039927e-04	k: 1257	n:4370000
Cons ci ratio: 2.326185e-03	ci left: 3.934199e-01	ci right 3.943363e-01	k: 1721247	n:4370000
KS ci ratio: 1.578021e-01	ci left: 1.300485e-04	ci right 1.525448e-04	k: 616	n:4370000
FAT4   4370000 perm   9639 sec   (453 perm/sec)   p_kst 1.409611e-04   p_cons 3.938780e-01   p_joint 2.876430e-04

Joint ci ratio: 1.103738e-01	ci left: 2.720067e-04	ci right 3.040025e-04	k: 1260	n:4380000
Cons ci ratio: 2.323549e-03	ci left: 3.934161e-01	ci right 3.943315e-01	k: 1725167	n:4380000
KS ci ratio: 1.576744e-01	ci left: 1.299709e-04	ci right 1.524338e-04	k: 617	n:4380000
FAT4   4380000 perm   9677 sec   (453 perm/sec)   p_kst 1.408676e-04   p_cons 3.938737e-01   p_joint 2.876712e-04

Joint ci ratio: 1.102427e-01	ci left: 2.720516e-04	ci right 3.040122e-04	k: 1263	n:4390000
Cons ci ratio: 2.320947e-03	ci left: 3.934071e-01	ci right 3.943215e-01	k: 1729064	n:4390000
KS ci ratio: 1.574199e-01	ci left: 1.301125e-04	ci right 1.525601e-04	k: 619	n:4390000
FAT4   4390000 perm   9715 sec   (452 perm/sec)   p_kst 1.410023e-04   p_cons 3.938642e-01   p_joint 2.876993e-04

Joint ci ratio: 1.101121e-01	ci left: 2.720963e-04	ci right 3.040219e-04	k: 1266	n:4400000
Cons ci ratio: 2.318397e-03	ci left: 3.933893e-01	ci right 3.943026e-01	k: 1732922	n:4400000
KS ci ratio: 1.571666e-01	ci left: 1.302534e-04	ci right 1.526858e-04	k: 621	n:4400000
FAT4   4400000 perm   9756 sec   (451 perm/sec)   p_kst 1.411364e-04   p_cons 3.938459e-01   p_joint 2.877273e-04

Joint ci ratio: 1.100253e-01	ci left: 2.719204e-04	ci right 3.037985e-04	k: 1268	n:4410000
Cons ci ratio: 2.315860e-03	ci left: 3.933707e-01	ci right 3.942830e-01	k: 1736776	n:4410000
KS ci ratio: 1.570404e-01	ci left: 1.301759e-04	ci right 1.525753e-04	k: 622	n:4410000
FAT4   4410000 perm   9795 sec   (450 perm/sec)   p_kst 1.410431e-04   p_cons 3.938268e-01   p_joint 2.875283e-04

Joint ci ratio: 1.099820e-01	ci left: 2.715252e-04	ci right 3.033436e-04	k: 1269	n:4420000
Cons ci ratio: 2.313280e-03	ci left: 3.933628e-01	ci right 3.942740e-01	k: 1740677	n:4420000
KS ci ratio: 1.570404e-01	ci left: 1.298814e-04	ci right 1.522301e-04	k: 622	n:4420000
FAT4   4420000 perm   9834 sec   (449 perm/sec)   p_kst 1.407240e-04   p_cons 3.938183e-01   p_joint 2.871041e-04

Joint ci ratio: 1.098524e-01	ci left: 2.715708e-04	ci right 3.033547e-04	k: 1272	n:4430000
Cons ci ratio: 2.310639e-03	ci left: 3.933691e-01	ci right 3.942793e-01	k: 1744641	n:4430000
KS ci ratio: 1.567889e-01	ci left: 1.300219e-04	ci right 1.523556e-04	k: 624	n:4430000
FAT4   4430000 perm   9873 sec   (449 perm/sec)   p_kst 1.408578e-04   p_cons 3.938242e-01   p_joint 2.871332e-04

Joint ci ratio: 1.097662e-01	ci left: 2.713973e-04	ci right 3.031343e-04	k: 1274	n:4440000
Cons ci ratio: 2.308102e-03	ci left: 3.933558e-01	ci right 3.942650e-01	k: 1748518	n:4440000
KS ci ratio: 1.566636e-01	ci left: 1.299455e-04	ci right 1.522465e-04	k: 625	n:4440000
FAT4   4440000 perm   9912 sec   (448 perm/sec)   p_kst 1.407658e-04   p_cons 3.938104e-01   p_joint 2.869369e-04

Joint ci ratio: 1.022943e-01	ci left: 3.130098e-04	ci right 3.469717e-04	k: 1467	n:4450000
Cons ci ratio: 2.305414e-03	ci left: 3.933757e-01	ci right 3.942838e-01	k: 1752542	n:4450000
KS ci ratio: 1.564140e-01	ci left: 1.300853e-04	ci right 1.523714e-04	k: 627	n:4450000
FAT4   4450000 perm   9952 sec   (447 perm/sec)   p_kst 1.408989e-04   p_cons 3.938297e-01   p_joint 3.296629e-04

Joint ci ratio: 1.022595e-01	ci left: 3.125265e-04	ci right 3.464237e-04	k: 1468	n:4460000
Cons ci ratio: 2.302797e-03	ci left: 3.933826e-01	ci right 3.942897e-01	k: 1756509	n:4460000
KS ci ratio: 1.564140e-01	ci left: 1.297936e-04	ci right 1.520298e-04	k: 627	n:4460000
FAT4   4460000 perm   9992 sec   (446 perm/sec)   p_kst 1.405830e-04   p_cons 3.938361e-01   p_joint 3.291480e-04

Joint ci ratio: 1.022247e-01	ci left: 3.120453e-04	ci right 3.458782e-04	k: 1469	n:4470000
Cons ci ratio: 2.300247e-03	ci left: 3.933774e-01	ci right 3.942836e-01	k: 1760422	n:4470000
KS ci ratio: 1.564140e-01	ci left: 1.295032e-04	ci right 1.516897e-04	k: 627	n:4470000
FAT4   4470000 perm   10032 sec   (446 perm/sec)   p_kst 1.402685e-04   p_cons 3.938304e-01   p_joint 3.286353e-04

Joint ci ratio: 1.021206e-01	ci left: 3.120013e-04	ci right 3.457929e-04	k: 1472	n:4480000
Cons ci ratio: 2.297751e-03	ci left: 3.933629e-01	ci right 3.942680e-01	k: 1764293	n:4480000
KS ci ratio: 1.561655e-01	ci left: 1.296432e-04	ci right 1.518150e-04	k: 629	n:4480000
FAT4   4480000 perm   10072 sec   (445 perm/sec)   p_kst 1.404018e-04   p_cons 3.938154e-01   p_joint 3.285714e-04

Joint ci ratio: 1.021206e-01	ci left: 3.113064e-04	ci right 3.450227e-04	k: 1472	n:4490000
Cons ci ratio: 2.295238e-03	ci left: 3.933536e-01	ci right 3.942577e-01	k: 1768187	n:4490000
KS ci ratio: 1.561656e-01	ci left: 1.293544e-04	ci right 1.514768e-04	k: 629	n:4490000
FAT4   4490000 perm   10112 sec   (444 perm/sec)   p_kst 1.400891e-04   p_cons 3.938056e-01   p_joint 3.278396e-04

Joint ci ratio: 1.020168e-01	ci left: 3.112643e-04	ci right 3.449397e-04	k: 1475	n:4500000
Cons ci ratio: 2.292727e-03	ci left: 3.933456e-01	ci right 3.942487e-01	k: 1772087	n:4500000
KS ci ratio: 1.560418e-01	ci left: 1.292805e-04	ci right 1.513711e-04	k: 630	n:4500000
FAT4   4500000 perm   10153 sec   (443 perm/sec)   p_kst 1.400000e-04   p_cons 3.937971e-01   p_joint 3.277778e-04

Joint ci ratio: 1.017757e-01	ci left: 3.120867e-04	ci right 3.457665e-04	k: 1482	n:4510000
Cons ci ratio: 2.290218e-03	ci left: 3.933391e-01	ci right 3.942411e-01	k: 1775993	n:4510000
KS ci ratio: 1.557951e-01	ci left: 1.294200e-04	ci right 1.514962e-04	k: 632	n:4510000
FAT4   4510000 perm   10194 sec   (442 perm/sec)   p_kst 1.401330e-04   p_cons 3.937900e-01   p_joint 3.286031e-04

Joint ci ratio: 1.016387e-01	ci left: 3.122586e-04	ci right 3.459090e-04	k: 1486	n:4520000
Cons ci ratio: 2.287613e-03	ci left: 3.933542e-01	ci right 3.942553e-01	k: 1779997	n:4520000
KS ci ratio: 1.555495e-01	ci left: 1.295589e-04	ci right 1.516208e-04	k: 634	n:4520000
FAT4   4520000 perm   10235 sec   (442 perm/sec)   p_kst 1.402655e-04   p_cons 3.938046e-01   p_joint 3.287611e-04

Joint ci ratio: 1.014682e-01	ci left: 3.126451e-04	ci right 3.462772e-04	k: 1491	n:4530000
Cons ci ratio: 2.285058e-03	ci left: 3.933606e-01	ci right 3.942607e-01	k: 1783962	n:4530000
KS ci ratio: 1.551833e-01	ci left: 1.299094e-04	ci right 1.519740e-04	k: 637	n:4530000
FAT4   4530000 perm   10276 sec   (441 perm/sec)   p_kst 1.406181e-04   p_cons 3.938106e-01   p_joint 3.291391e-04

Joint ci ratio: 1.012986e-01	ci left: 3.130298e-04	ci right 3.466437e-04	k: 1496	n:4540000
Cons ci ratio: 2.282563e-03	ci left: 3.933562e-01	ci right 3.942553e-01	k: 1787878	n:4540000
KS ci ratio: 1.549407e-01	ci left: 1.300467e-04	ci right 1.520969e-04	k: 639	n:4540000
FAT4   4540000 perm   10316 sec   (440 perm/sec)   p_kst 1.407489e-04   p_cons 3.938057e-01   p_joint 3.295154e-04

Joint ci ratio: 1.011973e-01	ci left: 3.129845e-04	ci right 3.465579e-04	k: 1499	n:4550000
Cons ci ratio: 2.280045e-03	ci left: 3.933585e-01	ci right 3.942566e-01	k: 1791824	n:4550000
KS ci ratio: 1.545788e-01	ci left: 1.303947e-04	ci right 1.524475e-04	k: 642	n:4550000
FAT4   4550000 perm   10361 sec   (439 perm/sec)   p_kst 1.410989e-04   p_cons 3.938075e-01   p_joint 3.294505e-04

Joint ci ratio: 1.011299e-01	ci left: 3.127256e-04	ci right 3.462476e-04	k: 1501	n:4560000
Cons ci ratio: 2.277552e-03	ci left: 3.933572e-01	ci right 3.942543e-01	k: 1795754	n:4560000
KS ci ratio: 1.543389e-01	ci left: 1.305304e-04	ci right 1.525687e-04	k: 644	n:4560000
FAT4   4560000 perm   10402 sec   (438 perm/sec)   p_kst 1.412281e-04   p_cons 3.938057e-01   p_joint 3.291667e-04

Joint ci ratio: 1.014004e-01	ci left: 3.103351e-04	ci right 3.436951e-04	k: 1493	n:4570000
Cons ci ratio: 2.275002e-03	ci left: 3.933697e-01	ci right 3.942659e-01	k: 1799747	n:4570000
KS ci ratio: 1.539812e-01	ci left: 1.308759e-04	ci right 1.529166e-04	k: 647	n:4570000
FAT4   4570000 perm   10444 sec   (438 perm/sec)   p_kst 1.415755e-04   p_cons 3.938177e-01   p_joint 3.266958e-04

Joint ci ratio: 1.012988e-01	ci left: 3.102959e-04	ci right 3.436163e-04	k: 1496	n:4580000
Cons ci ratio: 2.272643e-03	ci left: 3.933438e-01	ci right 3.942389e-01	k: 1803564	n:4580000
KS ci ratio: 1.537441e-01	ci left: 1.310100e-04	ci right 1.530362e-04	k: 649	n:4580000
FAT4   4580000 perm   10488 sec   (437 perm/sec)   p_kst 1.417031e-04   p_cons 3.937913e-01   p_joint 3.266376e-04

Joint ci ratio: 1.012312e-01	ci left: 3.100446e-04	ci right 3.433144e-04	k: 1498	n:4590000
Cons ci ratio: 2.270096e-03	ci left: 3.933589e-01	ci right 3.942530e-01	k: 1807569	n:4590000
KS ci ratio: 1.537441e-01	ci left: 1.307246e-04	ci right 1.527028e-04	k: 649	n:4590000
FAT4   4590000 perm   10529 sec   (436 perm/sec)   p_kst 1.413943e-04   p_cons 3.938059e-01   p_joint 3.263617e-04

Joint ci ratio: 1.011300e-01	ci left: 3.100062e-04	ci right 3.432367e-04	k: 1501	n:4600000
Cons ci ratio: 2.267710e-03	ci left: 3.933419e-01	ci right 3.942351e-01	k: 1811427	n:4600000
KS ci ratio: 1.536260e-01	ci left: 1.306494e-04	ci right 1.525966e-04	k: 650	n:4600000
FAT4   4600000 perm   10570 sec   (435 perm/sec)   p_kst 1.413043e-04   p_cons 3.937885e-01   p_joint 3.263043e-04

Joint ci ratio: 1.013666e-01	ci left: 3.078538e-04	ci right 3.409353e-04	k: 1494	n:4610000
Cons ci ratio: 2.265258e-03	ci left: 3.933405e-01	ci right 3.942327e-01	k: 1815356	n:4610000
KS ci ratio: 1.532732e-01	ci left: 1.309918e-04	ci right 1.529413e-04	k: 653	n:4610000
FAT4   4610000 perm   10613 sec   (434 perm/sec)   p_kst 1.416486e-04   p_cons 3.937866e-01   p_joint 3.240781e-04

Joint ci ratio: 1.012651e-01	ci left: 3.078203e-04	ci right 3.408632e-04	k: 1497	n:4620000
Cons ci ratio: 2.262755e-03	ci left: 3.933516e-01	ci right 3.942429e-01	k: 1819343	n:4620000
KS ci ratio: 1.531562e-01	ci left: 1.309164e-04	ci right 1.528350e-04	k: 654	n:4620000
FAT4   4620000 perm   10657 sec   (434 perm/sec)   p_kst 1.415584e-04   p_cons 3.937972e-01   p_joint 3.240260e-04

Joint ci ratio: 1.012313e-01	ci left: 3.073660e-04	ci right 3.403484e-04	k: 1498	n:4630000
Cons ci ratio: 2.260387e-03	ci left: 3.933359e-01	ci right 3.942262e-01	k: 1823206	n:4630000
KS ci ratio: 1.531562e-01	ci left: 1.306337e-04	ci right 1.525049e-04	k: 654	n:4630000
FAT4   4630000 perm   10700 sec   (433 perm/sec)   p_kst 1.412527e-04   p_cons 3.937810e-01   p_joint 3.235421e-04

Joint ci ratio: 1.015027e-01	ci left: 3.050231e-04	ci right 3.378471e-04	k: 1490	n:4640000
Cons ci ratio: 2.257920e-03	ci left: 3.933427e-01	ci right 3.942320e-01	k: 1827173	n:4640000
KS ci ratio: 1.531562e-01	ci left: 1.303521e-04	ci right 1.521762e-04	k: 654	n:4640000
FAT4   4640000 perm   10742 sec   (432 perm/sec)   p_kst 1.409483e-04   p_cons 3.937873e-01   p_joint 3.211207e-04

Joint ci ratio: 1.013329e-01	ci left: 3.054151e-04	ci right 3.382231e-04	k: 1495	n:4650000
Cons ci ratio: 2.255412e-03	ci left: 3.933600e-01	ci right 3.942483e-01	k: 1831189	n:4650000
KS ci ratio: 1.529229e-01	ci left: 1.304854e-04	ci right 1.522955e-04	k: 656	n:4650000
FAT4   4650000 perm   10783 sec   (431 perm/sec)   p_kst 1.410753e-04   p_cons 3.938041e-01   p_joint 3.215054e-04

Joint ci ratio: 1.012652e-01	ci left: 3.051780e-04	ci right 3.379373e-04	k: 1497	n:4660000
Cons ci ratio: 2.252998e-03	ci left: 3.933587e-01	ci right 3.942461e-01	k: 1835119	n:4660000
KS ci ratio: 1.526907e-01	ci left: 1.306182e-04	ci right 1.524143e-04	k: 658	n:4660000
FAT4   4660000 perm   10824 sec   (431 perm/sec)   p_kst 1.412017e-04   p_cons 3.938024e-01   p_joint 3.212446e-04

Joint ci ratio: 1.010630e-01	ci left: 3.057769e-04	ci right 3.385310e-04	k: 1503	n:4670000
Cons ci ratio: 2.250676e-03	ci left: 3.933399e-01	ci right 3.942264e-01	k: 1838967	n:4670000
KS ci ratio: 1.525750e-01	ci left: 1.305445e-04	ci right 1.523102e-04	k: 659	n:4670000
FAT4   4670000 perm   10868 sec   (430 perm/sec)   p_kst 1.411135e-04   p_cons 3.937831e-01   p_joint 3.218415e-04

Joint ci ratio: 1.009959e-01	ci left: 3.055400e-04	ci right 3.382458e-04	k: 1505	n:4680000
Cons ci ratio: 2.248249e-03	ci left: 3.933449e-01	ci right 3.942304e-01	k: 1842926	n:4680000
KS ci ratio: 1.525750e-01	ci left: 1.302655e-04	ci right 1.519848e-04	k: 659	n:4680000
FAT4   4680000 perm   10911 sec   (429 perm/sec)   p_kst 1.408120e-04   p_cons 3.937876e-01   p_joint 3.215812e-04

Joint ci ratio: 1.007953e-01	ci left: 3.061356e-04	ci right 3.388362e-04	k: 1511	n:4690000
Cons ci ratio: 2.245829e-03	ci left: 3.933499e-01	ci right 3.942345e-01	k: 1846885	n:4690000
KS ci ratio: 1.523444e-01	ci left: 1.303979e-04	ci right 1.521034e-04	k: 661	n:4690000
FAT4   4690000 perm   10957 sec   (428 perm/sec)   p_kst 1.409382e-04   p_cons 3.937921e-01   p_joint 3.221748e-04

Joint ci ratio: 1.029284e-01	ci left: 2.926287e-04	ci right 3.245880e-04	k: 1449	n:4700000
Cons ci ratio: 2.243499e-03	ci left: 3.933376e-01	ci right 3.942212e-01	k: 1850763	n:4700000
KS ci ratio: 1.522294e-01	ci left: 1.303252e-04	ci right 1.520007e-04	k: 662	n:4700000
FAT4   4700000 perm   11007 sec   (427 perm/sec)   p_kst 1.408511e-04   p_cons 3.937794e-01   p_joint 3.082979e-04

Joint ci ratio: 1.042677e-01	ci left: 2.843552e-04	ci right 3.158398e-04	k: 1412	n:4710000
Cons ci ratio: 2.241150e-03	ci left: 3.933309e-01	ci right 3.942136e-01	k: 1854667	n:4710000
KS ci ratio: 1.522295e-01	ci left: 1.300485e-04	ci right 1.516779e-04	k: 662	n:4710000
FAT4   4710000 perm   11056 sec   (426 perm/sec)   p_kst 1.405520e-04   p_cons 3.937722e-01   p_joint 2.997877e-04

Joint ci ratio: 1.040103e-01	ci left: 2.851972e-04	ci right 3.166923e-04	k: 1419	n:4720000
Cons ci ratio: 2.238829e-03	ci left: 3.933198e-01	ci right 3.942015e-01	k: 1858550	n:4720000
KS ci ratio: 1.518862e-01	ci left: 1.303843e-04	ci right 1.520163e-04	k: 665	n:4720000
FAT4   4720000 perm   11097 sec   (425 perm/sec)   p_kst 1.408898e-04   p_cons 3.937606e-01   p_joint 3.006356e-04

Joint ci ratio: 1.045271e-01	ci left: 2.817116e-04	ci right 3.129858e-04	k: 1405	n:4730000
Cons ci ratio: 2.236423e-03	ci left: 3.933284e-01	ci right 3.942092e-01	k: 1862526	n:4730000
KS ci ratio: 1.518862e-01	ci left: 1.301087e-04	ci right 1.516950e-04	k: 665	n:4730000
FAT4   4730000 perm   11141 sec   (425 perm/sec)   p_kst 1.405920e-04   p_cons 3.937687e-01   p_joint 2.970402e-04

Joint ci ratio: 1.044899e-01	ci left: 2.813227e-04	ci right 3.125420e-04	k: 1406	n:4740000
Cons ci ratio: 2.234048e-03	ci left: 3.933318e-01	ci right 3.942117e-01	k: 1866478	n:4740000
KS ci ratio: 1.518862e-01	ci left: 1.298342e-04	ci right 1.513749e-04	k: 665	n:4740000
FAT4   4740000 perm   11184 sec   (424 perm/sec)   p_kst 1.402954e-04   p_cons 3.937717e-01   p_joint 2.966245e-04

Joint ci ratio: 1.043417e-01	ci left: 2.815506e-04	ci right 3.127481e-04	k: 1410	n:4750000
Cons ci ratio: 2.231716e-03	ci left: 3.933279e-01	ci right 3.942069e-01	k: 1870395	n:4750000
KS ci ratio: 1.516587e-01	ci left: 1.299659e-04	ci right 1.514933e-04	k: 667	n:4750000
FAT4   4750000 perm   11231 sec   (423 perm/sec)   p_kst 1.404211e-04   p_cons 3.937674e-01   p_joint 2.968421e-04

Joint ci ratio: 1.041573e-01	ci left: 2.819821e-04	ci right 3.131688e-04	k: 1415	n:4760000
Cons ci ratio: 2.229414e-03	ci left: 3.933190e-01	ci right 3.941971e-01	k: 1874288	n:4760000
KS ci ratio: 1.514321e-01	ci left: 1.300971e-04	ci right 1.516111e-04	k: 669	n:4760000
FAT4   4760000 perm   11275 sec   (422 perm/sec)   p_kst 1.405462e-04   p_cons 3.937580e-01   p_joint 2.972689e-04

Joint ci ratio: 1.039739e-01	ci left: 2.824119e-04	ci right 3.135878e-04	k: 1420	n:4770000
Cons ci ratio: 2.226999e-03	ci left: 3.933359e-01	ci right 3.942131e-01	k: 1878304	n:4770000
KS ci ratio: 1.513193e-01	ci left: 1.300261e-04	ci right 1.515108e-04	k: 670	n:4770000
FAT4   4770000 perm   11319 sec   (421 perm/sec)   p_kst 1.404612e-04   p_cons 3.937744e-01   p_joint 2.976939e-04

Joint ci ratio: 1.039373e-01	ci left: 2.820248e-04	ci right 3.131464e-04	k: 1421	n:4780000
Cons ci ratio: 2.224759e-03	ci left: 3.933170e-01	ci right 3.941932e-01	k: 1882149	n:4780000
KS ci ratio: 1.513193e-01	ci left: 1.297541e-04	ci right 1.511939e-04	k: 670	n:4780000
FAT4   4780000 perm   11364 sec   (421 perm/sec)   p_kst 1.401674e-04   p_cons 3.937550e-01   p_joint 2.972803e-04

Joint ci ratio: 1.037915e-01	ci left: 2.822494e-04	ci right 3.133494e-04	k: 1425	n:4790000
Cons ci ratio: 2.222444e-03	ci left: 3.933157e-01	ci right 3.941909e-01	k: 1886078	n:4790000
KS ci ratio: 1.509821e-01	ci left: 1.300858e-04	ci right 1.515282e-04	k: 673	n:4790000
FAT4   4790000 perm   11407 sec   (420 perm/sec)   p_kst 1.405010e-04   p_cons 3.937532e-01   p_joint 2.974948e-04

Joint ci ratio: 1.037551e-01	ci left: 2.818643e-04	ci right 3.129103e-04	k: 1426	n:4800000
Cons ci ratio: 2.220045e-03	ci left: 3.933339e-01	ci right 3.942083e-01	k: 1890101	n:4800000
KS ci ratio: 1.508702e-01	ci left: 1.300153e-04	ci right 1.514287e-04	k: 674	n:4800000
FAT4   4800000 perm   11453 sec   (419 perm/sec)   p_kst 1.404167e-04   p_cons 3.937710e-01   p_joint 2.970833e-04

Joint ci ratio: 1.037551e-01	ci left: 2.812783e-04	ci right 3.122598e-04	k: 1426	n:4810000
Cons ci ratio: 2.217696e-03	ci left: 3.933430e-01	ci right 3.942164e-01	k: 1894080	n:4810000
KS ci ratio: 1.508703e-01	ci left: 1.297450e-04	ci right 1.511139e-04	k: 674	n:4810000
FAT4   4810000 perm   11504 sec   (418 perm/sec)   p_kst 1.401247e-04   p_cons 3.937796e-01   p_joint 2.964657e-04

Joint ci ratio: 1.037188e-01	ci left: 2.808969e-04	ci right 3.118248e-04	k: 1427	n:4820000
Cons ci ratio: 2.215437e-03	ci left: 3.933341e-01	ci right 3.942067e-01	k: 1897973	n:4820000
KS ci ratio: 1.507586e-01	ci left: 1.296754e-04	ci right 1.510157e-04	k: 675	n:4820000
FAT4   4820000 perm   11547 sec   (417 perm/sec)   p_kst 1.400415e-04   p_cons 3.937703e-01   p_joint 2.960581e-04

Joint ci ratio: 1.036100e-01	ci left: 2.809203e-04	ci right 3.118164e-04	k: 1430	n:4830000
Cons ci ratio: 2.213099e-03	ci left: 3.933439e-01	ci right 3.942156e-01	k: 1901956	n:4830000
KS ci ratio: 1.507587e-01	ci left: 1.294069e-04	ci right 1.507030e-04	k: 675	n:4830000
FAT4   4830000 perm   11595 sec   (417 perm/sec)   p_kst 1.397516e-04   p_cons 3.937797e-01   p_joint 2.960663e-04

Joint ci ratio: 1.035016e-01	ci left: 2.809437e-04	ci right 3.118081e-04	k: 1433	n:4840000
Cons ci ratio: 2.210773e-03	ci left: 3.933527e-01	ci right 3.942235e-01	k: 1905934	n:4840000
KS ci ratio: 1.506473e-01	ci left: 1.293384e-04	ci right 1.506060e-04	k: 676	n:4840000
FAT4   4840000 perm   11639 sec   (416 perm/sec)   p_kst 1.396694e-04   p_cons 3.937880e-01   p_joint 2.960744e-04

Joint ci ratio: 1.033575e-01	ci left: 2.811678e-04	ci right 3.120112e-04	k: 1437	n:4850000
Cons ci ratio: 2.208474e-03	ci left: 3.933573e-01	ci right 3.942272e-01	k: 1909892	n:4850000
KS ci ratio: 1.503146e-01	ci left: 1.296670e-04	ci right 1.509373e-04	k: 679	n:4850000
FAT4   4850000 perm   11681 sec   (415 perm/sec)   p_kst 1.400000e-04   p_cons 3.937922e-01   p_joint 2.962887e-04

Joint ci ratio: 1.031426e-01	ci left: 2.817920e-04	ci right 3.126357e-04	k: 1443	n:4860000
Cons ci ratio: 2.206181e-03	ci left: 3.933619e-01	ci right 3.942308e-01	k: 1913850	n:4860000
KS ci ratio: 1.499841e-01	ci left: 1.299943e-04	ci right 1.512672e-04	k: 682	n:4860000
FAT4   4860000 perm   11726 sec   (414 perm/sec)   p_kst 1.403292e-04   p_cons 3.937963e-01   p_joint 2.969136e-04

Joint ci ratio: 1.029644e-01	ci left: 2.822136e-04	ci right 3.130468e-04	k: 1448	n:4870000
Cons ci ratio: 2.203928e-03	ci left: 3.933597e-01	ci right 3.942277e-01	k: 1917775	n:4870000
KS ci ratio: 1.498744e-01	ci left: 1.299250e-04	ci right 1.511696e-04	k: 683	n:4870000
FAT4   4870000 perm   11770 sec   (414 perm/sec)   p_kst 1.402464e-04   p_cons 3.937936e-01   p_joint 2.973306e-04

Joint ci ratio: 1.029289e-01	ci left: 2.818349e-04	ci right 3.126155e-04	k: 1449	n:4880000
Cons ci ratio: 2.201690e-03	ci left: 3.933554e-01	ci right 3.942226e-01	k: 1921690	n:4880000
KS ci ratio: 1.498744e-01	ci left: 1.296587e-04	ci right 1.508599e-04	k: 683	n:4880000
FAT4   4880000 perm   11813 sec   (413 perm/sec)   p_kst 1.399590e-04   p_cons 3.937889e-01   p_joint 2.969262e-04

Joint ci ratio: 1.027872e-01	ci left: 2.820555e-04	ci right 3.128153e-04	k: 1453	n:4890000
Cons ci ratio: 2.199437e-03	ci left: 3.933559e-01	ci right 3.942222e-01	k: 1925628	n:4890000
KS ci ratio: 1.497650e-01	ci left: 1.295904e-04	ci right 1.507635e-04	k: 684	n:4890000
FAT4   4890000 perm   11857 sec   (412 perm/sec)   p_kst 1.398773e-04   p_cons 3.937890e-01   p_joint 2.971370e-04

Joint ci ratio: 1.027519e-01	ci left: 2.816787e-04	ci right 3.123862e-04	k: 1454	n:4900000
Cons ci ratio: 2.197221e-03	ci left: 3.933500e-01	ci right 3.942154e-01	k: 1929535	n:4900000
KS ci ratio: 1.495468e-01	ci left: 1.297188e-04	ci right 1.508793e-04	k: 686	n:4900000
FAT4   4900000 perm   11899 sec   (412 perm/sec)   p_kst 1.400000e-04   p_cons 3.937827e-01   p_joint 2.967347e-04

Joint ci ratio: 1.026814e-01	ci left: 2.815019e-04	ci right 3.121678e-04	k: 1456	n:4910000
Cons ci ratio: 2.195061e-03	ci left: 3.933334e-01	ci right 3.941979e-01	k: 1933389	n:4910000
KS ci ratio: 1.494381e-01	ci left: 1.296507e-04	ci right 1.507833e-04	k: 687	n:4910000
FAT4   4910000 perm   11944 sec   (411 perm/sec)   p_kst 1.399185e-04   p_cons 3.937656e-01   p_joint 2.965377e-04

Joint ci ratio: 1.025407e-01	ci left: 2.817219e-04	ci right 3.123671e-04	k: 1460	n:4920000
Cons ci ratio: 2.192835e-03	ci left: 3.933325e-01	ci right 3.941961e-01	k: 1937320	n:4920000
KS ci ratio: 1.492214e-01	ci left: 1.297785e-04	ci right 1.508985e-04	k: 689	n:4920000
FAT4   4920000 perm   11988 sec   (410 perm/sec)   p_kst 1.400407e-04   p_cons 3.937642e-01   p_joint 2.967480e-04

Joint ci ratio: 1.024706e-01	ci left: 2.815457e-04	ci right 3.121496e-04	k: 1462	n:4930000
Cons ci ratio: 2.190617e-03	ci left: 3.933314e-01	ci right 3.941941e-01	k: 1941250	n:4930000
KS ci ratio: 1.492214e-01	ci left: 1.295152e-04	ci right 1.505924e-04	k: 689	n:4930000
FAT4   4930000 perm   12032 sec   (410 perm/sec)   p_kst 1.397566e-04   p_cons 3.937627e-01   p_joint 2.965517e-04

Joint ci ratio: 1.022611e-01	ci left: 2.821593e-04	ci right 3.127634e-04	k: 1468	n:4940000
Cons ci ratio: 2.188415e-03	ci left: 3.933282e-01	ci right 3.941901e-01	k: 1945170	n:4940000
KS ci ratio: 1.487907e-01	ci left: 1.300326e-04	ci right 1.511274e-04	k: 693	n:4940000
FAT4   4940000 perm   12078 sec   (409 perm/sec)   p_kst 1.402834e-04   p_cons 3.937591e-01   p_joint 2.971660e-04

Joint ci ratio: 1.020183e-01	ci left: 2.829673e-04	ci right 3.135818e-04	k: 1475	n:4950000
Cons ci ratio: 2.186129e-03	ci left: 3.933449e-01	ci right 3.942059e-01	k: 1949188	n:4950000
KS ci ratio: 1.485768e-01	ci left: 1.301589e-04	ci right 1.512412e-04	k: 695	n:4950000
FAT4   4950000 perm   12126 sec   (408 perm/sec)   p_kst 1.404040e-04   p_cons 3.937754e-01   p_joint 2.979798e-04

Joint ci ratio: 1.019148e-01	ci left: 2.829862e-04	ci right 3.135698e-04	k: 1478	n:4960000
Cons ci ratio: 2.183910e-03	ci left: 3.933484e-01	ci right 3.942086e-01	k: 1953141	n:4960000
KS ci ratio: 1.483637e-01	ci left: 1.302847e-04	ci right 1.513545e-04	k: 697	n:4960000
FAT4   4960000 perm   12172 sec   (407 perm/sec)   p_kst 1.405242e-04   p_cons 3.937784e-01   p_joint 2.979839e-04

Joint ci ratio: 1.018804e-01	ci left: 2.826129e-04	ci right 3.131452e-04	k: 1479	n:4970000
Cons ci ratio: 2.181711e-03	ci left: 3.933491e-01	ci right 3.942084e-01	k: 1957080	n:4970000
KS ci ratio: 1.482576e-01	ci left: 1.302163e-04	ci right 1.512586e-04	k: 698	n:4970000
FAT4   4970000 perm   12219 sec   (407 perm/sec)   p_kst 1.404427e-04   p_cons 3.937787e-01   p_joint 2.975855e-04

Joint ci ratio: 1.017773e-01	ci left: 2.826325e-04	ci right 3.131342e-04	k: 1482	n:4980000
Cons ci ratio: 2.179552e-03	ci left: 3.933423e-01	ci right 3.942008e-01	k: 1960982	n:4980000
KS ci ratio: 1.479404e-01	ci left: 1.305349e-04	ci right 1.515796e-04	k: 701	n:4980000
FAT4   4980000 perm   12265 sec   (406 perm/sec)   p_kst 1.407631e-04   p_cons 3.937715e-01   p_joint 2.975904e-04

Joint ci ratio: 1.017430e-01	ci left: 2.822614e-04	ci right 3.127122e-04	k: 1483	n:4990000
Cons ci ratio: 2.177354e-03	ci left: 3.933456e-01	ci right 3.942032e-01	k: 1964934	n:4990000
KS ci ratio: 1.478352e-01	ci left: 1.304663e-04	ci right 1.514836e-04	k: 702	n:4990000
FAT4   4990000 perm   12311 sec   (405 perm/sec)   p_kst 1.406814e-04   p_cons 3.937743e-01   p_joint 2.971944e-04

Joint ci ratio: 8.918894e-02	ci left: 3.689724e-04	ci right 4.036105e-04	k: 1930	n:5000000
Cons ci ratio: 2.065073e-03	ci left: 4.183955e-01	ci right 4.192606e-01	k: 2094140	n:5000000
KS ci ratio: 1.478352e-01	ci left: 1.302054e-04	ci right 1.511807e-04	k: 702	n:5000000
FAT4   5000000 perm   12356 sec   (405 perm/sec)   p_kst 1.404000e-04   p_cons 4.188280e-01   p_joint 3.860000e-04

Outputting figure to mutsig2_images.part000000000063/FAT4.73_15014_5000000_0.0001404_0.41883_0.000386.png
                gene_name: FAT4
               theta_stop: 0.15 
                    nperm: 5000000 
                     p_ks: 0.00014 
        ci_ks_bounds_left: 0.00013 
       ci_ks_bounds_right: 0.00015 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.00039 
     ci_joint_bounds_left: 0.00037 
    ci_joint_bounds_right: 0.00040 

Current progress: 2 percent done.
FAT2
Processing conservation and coverage...
76% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.920559e-02	ci left: 2.344220e-01	ci right 2.513280e-01	k: 2428	n:10000
Cons ci ratio: 7.118065e-02	ci left: 2.243482e-01	ci right 2.410078e-01	k: 2326	n:10000
KS ci ratio: 8.770386e-02	ci left: 1.591483e-01	ci right 1.738466e-01	k: 1664	n:10000
FAT2   10000 perm   4 sec   (2466 perm/sec)   p_kst 1.664000e-01   p_cons 2.326000e-01   p_joint 2.428000e-01

Outputting figure to mutsig2_images.part000000000063/FAT2.51_13142_10000_0.1664_0.2326_0.2428.png
                gene_name: FAT2
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 3 percent done.
FAT3
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.608365e-02	ci left: 3.188987e-01	ci right 3.374015e-01	k: 3281	n:10000
Cons ci ratio: 2.241456e-02	ci left: 7.450311e-01	ci right 7.620210e-01	k: 7536	n:10000
KS ci ratio: 7.084347e-02	ci left: 2.260267e-01	ci right 2.427283e-01	k: 2343	n:10000
FAT3   10000 perm   4 sec   (2611 perm/sec)   p_kst 2.343000e-01   p_cons 7.536000e-01   p_joint 3.281000e-01

Outputting figure to mutsig2_images.part000000000063/FAT3.33_13774_10000_0.2343_0.7536_0.3281.png
                gene_name: FAT3
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 5 percent done.
FBN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.167987e-02	ci left: 2.787412e-01	ci right 2.965826e-01	k: 2876	n:10000
Cons ci ratio: 1.047660e-01	ci left: 1.163301e-01	ci right 1.292906e-01	k: 1227	n:10000
KS ci ratio: 4.211635e-02	ci left: 4.542871e-01	ci right 4.739338e-01	k: 4641	n:10000
FBN1   10000 perm   3 sec   (3222 perm/sec)   p_kst 4.641000e-01   p_cons 1.227000e-01   p_joint 2.876000e-01

Joint ci ratio: 4.618615e-02	ci left: 2.586449e-01	ci right 2.709235e-01	k: 5295	n:20000
Cons ci ratio: 7.552655e-02	ci left: 1.141990e-01	ci right 1.232122e-01	k: 2373	n:20000
KS ci ratio: 2.978919e-02	ci left: 4.570691e-01	ci right 4.709413e-01	k: 9280	n:20000
FBN1   20000 perm   7 sec   (2910 perm/sec)   p_kst 4.640000e-01   p_cons 1.186500e-01   p_joint 2.647500e-01

Outputting figure to mutsig2_images.part000000000063/FBN1.33_8876_20000_0.464_0.11865_0.26475.png
                gene_name: FBN1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 6 percent done.
FAT1
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.149518e-02	ci left: 4.616756e-01	ci right 4.813410e-01	k: 4715	n:10000
Cons ci ratio: 7.724826e-03	ci left: 9.587987e-01	ci right 9.663288e-01	k: 9627	n:10000
KS ci ratio: 5.922919e-02	ci left: 2.954883e-01	ci right 3.136257e-01	k: 3045	n:10000
FAT1   10000 perm   4 sec   (2650 perm/sec)   p_kst 3.045000e-01   p_cons 9.627000e-01   p_joint 4.715000e-01

Outputting figure to mutsig2_images.part000000000063/FAT1.23_13871_10000_0.3045_0.9627_0.4715.png
                gene_name: FAT1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 8 percent done.
FBN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
Cons ci ratio: 9.291121e-02	ci left: 1.440348e-01	ci right 1.581691e-01	k: 1510	n:10000
KS ci ratio: 4.253351e-02	ci left: 4.493959e-01	ci right 4.690278e-01	k: 4592	n:10000
FBN2   10000 perm   4 sec   (2578 perm/sec)   p_kst 4.592000e-01   p_cons 1.510000e-01   p_joint 3.267000e-01

Outputting figure to mutsig2_images.part000000000063/FBN2.23_8999_10000_0.4592_0.151_0.3267.png
                gene_name: FBN2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 10 percent done.
FANCM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.918069e-02	ci left: 3.788311e-01	ci right 3.980340e-01	k: 3884	n:10000
Cons ci ratio: 8.236279e-03	ci left: 9.536741e-01	ci right 9.616565e-01	k: 9578	n:10000
KS ci ratio: 7.365934e-02	ci left: 2.125053e-01	ci right 2.288578e-01	k: 2206	n:10000
FANCM   10000 perm   3 sec   (3505 perm/sec)   p_kst 2.206000e-01   p_cons 9.578000e-01   p_joint 3.884000e-01

Outputting figure to mutsig2_images.part000000000063/FANCM.16_6239_10000_0.2206_0.9578_0.3884.png
                gene_name: FANCM
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 11 percent done.
FBXO18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.167809e-02	ci left: 7.573729e-01	ci right 7.740721e-01	k: 7658	n:10000
Cons ci ratio: 5.016777e-02	ci left: 3.694779e-01	ci right 3.885927e-01	k: 3790	n:10000
KS ci ratio: 2.161163e-02	ci left: 7.584861e-01	ci right 7.751582e-01	k: 7669	n:10000
FBXO18   10000 perm   2 sec   (4385 perm/sec)   p_kst 7.669000e-01   p_cons 3.790000e-01   p_joint 7.658000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO18.11_3378_10000_0.7669_0.379_0.7658.png
                gene_name: FBXO18
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 13 percent done.
FBN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.688723e-02	ci left: 1.983069e-01	ci right 2.142646e-01	k: 2062	n:10000
Cons ci ratio: 5.244895e-02	ci left: 3.488943e-01	ci right 3.677882e-01	k: 3583	n:10000
KS ci ratio: 9.926549e-02	ci left: 1.281636e-01	ci right 1.416499e-01	k: 1348	n:10000
FBN3   10000 perm   3 sec   (3470 perm/sec)   p_kst 1.348000e-01   p_cons 3.583000e-01   p_joint 2.062000e-01

Outputting figure to mutsig2_images.part000000000063/FBN3.9_8682_10000_0.1348_0.3583_0.2062.png
                gene_name: FBN3
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 14 percent done.
FBXL7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.526021e-02	ci left: 5.428906e-01	ci right 5.624787e-01	k: 5527	n:10000
Cons ci ratio: 2.129725e-02	ci left: 7.637498e-01	ci right 7.802915e-01	k: 7721	n:10000
KS ci ratio: 5.105301e-02	ci left: 3.613218e-01	ci right 3.803535e-01	k: 3708	n:10000
FBXL7   10000 perm   2 sec   (5955 perm/sec)   p_kst 3.708000e-01   p_cons 7.721000e-01   p_joint 5.527000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL7.9_1492_10000_0.3708_0.7721_0.5527.png
                gene_name: FBXL7
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 16 percent done.
FBXO10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.720472e-02	ci left: 6.656194e-01	ci right 6.840787e-01	k: 6749	n:10000
Cons ci ratio: 2.768326e-02	ci left: 6.578667e-01	ci right 6.764359e-01	k: 6672	n:10000
KS ci ratio: 5.460375e-02	ci left: 3.307132e-01	ci right 3.493801e-01	k: 3400	n:10000
FBXO10   10000 perm   2 sec   (5105 perm/sec)   p_kst 3.400000e-01   p_cons 6.672000e-01   p_joint 6.749000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO10.9_2911_10000_0.34_0.6672_0.6749.png
                gene_name: FBXO10
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 17 percent done.
FARP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.176252e-02	ci left: 4.584803e-01	ci right 4.781381e-01	k: 4683	n:10000
Cons ci ratio: 8.286976e-03	ci left: 9.531520e-01	ci right 9.611789e-01	k: 9573	n:10000
KS ci ratio: 5.455513e-02	ci left: 3.311104e-01	ci right 3.497826e-01	k: 3404	n:10000
FARP1   10000 perm   2 sec   (4059 perm/sec)   p_kst 3.404000e-01   p_cons 9.573000e-01   p_joint 4.683000e-01

Outputting figure to mutsig2_images.part000000000063/FARP1.8_3465_10000_0.3404_0.9573_0.4683.png
                gene_name: FARP1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 19 percent done.
FARSB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.076116e-03	ci left: 9.809150e-01	ci right 9.859977e-01	k: 9836	n:10000
KS ci ratio: 2.576490e-02	ci left: 6.891970e-01	ci right 7.072873e-01	k: 6983	n:10000
FARSB   10000 perm   2 sec   (4825 perm/sec)   p_kst 6.983000e-01   p_cons 9.836000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FARSB.8_1838_10000_0.6983_0.9836_1.png
                gene_name: FARSB
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
FASTKD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.111979e-01	ci left: 2.977507e-02	ci right 3.690017e-02	k: 332	n:10000
Cons ci ratio: 4.789100e-02	ci left: 3.914738e-01	ci right 4.107839e-01	k: 4011	n:10000
KS ci ratio: 2.105447e-01	ci left: 2.996481e-02	ci right 3.711029e-02	k: 334	n:10000
FASTKD3   10000 perm   2 sec   (4503 perm/sec)   p_kst 3.340000e-02   p_cons 4.011000e-01   p_joint 3.320000e-02

Joint ci ratio: 1.293542e-01	ci left: 4.105370e-02	ci right 4.677985e-02	k: 877	n:20000
Cons ci ratio: 3.361137e-02	ci left: 3.979366e-01	ci right 4.115911e-01	k: 8095	n:20000
KS ci ratio: 1.452206e-01	ci left: 3.259226e-02	ci right 3.774403e-02	k: 702	n:20000
FASTKD3   20000 perm   5 sec   (4073 perm/sec)   p_kst 3.510000e-02   p_cons 4.047500e-01   p_joint 4.385000e-02

Joint ci ratio: 9.375085e-02	ci left: 5.247933e-02	ci right 5.767393e-02	k: 1651	n:30000
Cons ci ratio: 2.761316e-02	ci left: 3.962453e-01	ci right 4.073737e-01	k: 12054	n:30000
KS ci ratio: 1.261822e-01	ci left: 2.919686e-02	ci right 3.316128e-02	k: 934	n:30000
FASTKD3   30000 perm   7 sec   (4124 perm/sec)   p_kst 3.113333e-02   p_cons 4.018000e-01   p_joint 5.503333e-02

Joint ci ratio: 8.143902e-02	ci left: 5.251599e-02	ci right 5.699892e-02	k: 2189	n:40000
Cons ci ratio: 2.468871e-02	ci left: 3.817987e-01	ci right 3.913678e-01	k: 15463	n:40000
KS ci ratio: 1.100389e-01	ci left: 2.905546e-02	ci right 3.246311e-02	k: 1229	n:40000
FASTKD3   40000 perm   10 sec   (4093 perm/sec)   p_kst 3.072500e-02   p_cons 3.865750e-01   p_joint 5.472500e-02

Joint ci ratio: 7.370707e-02	ci left: 5.156319e-02	ci right 5.552884e-02	k: 2676	n:50000
Cons ci ratio: 2.210088e-02	ci left: 3.819092e-01	ci right 3.904641e-01	k: 19309	n:50000
KS ci ratio: 9.910577e-02	ci left: 2.883438e-02	ci right 3.186048e-02	k: 1516	n:50000
FASTKD3   50000 perm   12 sec   (4044 perm/sec)   p_kst 3.032000e-02   p_cons 3.861800e-01   p_joint 5.352000e-02

Outputting figure to mutsig2_images.part000000000063/FASTKD3.8_2013_50000_0.03032_0.38618_0.05352.png
                gene_name: FASTKD3
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 22 percent done.
FBXO40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.013191e-03	ci left: 9.813449e-01	ci right 9.863675e-01	k: 9840	n:10000
Cons ci ratio: 5.542886e-04	ci left: 9.994430e-01	ci right 9.999975e-01	k: 9999	n:10000
KS ci ratio: 1.085058e-02	ci left: 9.236870e-01	ci right 9.338615e-01	k: 9289	n:10000
FBXO40   10000 perm   2 sec   (4363 perm/sec)   p_kst 9.289000e-01   p_cons 9.999000e-01   p_joint 9.840000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO40.8_2142_10000_0.9289_0.9999_0.984.png
                gene_name: FBXO40
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 24 percent done.
FASTKD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.705912e-02	ci left: 8.334802e-01	ci right 8.479208e-01	k: 8408	n:10000
KS ci ratio: 2.979401e-02	ci left: 6.242697e-01	ci right 6.432523e-01	k: 6338	n:10000
FASTKD1   10000 perm   2 sec   (5385 perm/sec)   p_kst 6.338000e-01   p_cons 8.408000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FASTKD1.7_2600_10000_0.6338_0.8408_1.png
                gene_name: FASTKD1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
FBLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.841444e-02	ci left: 3.013384e-01	ci right 3.195722e-01	k: 3104	n:10000
Cons ci ratio: 2.976835e-02	ci left: 6.246718e-01	ci right 6.436500e-01	k: 6342	n:10000
KS ci ratio: 7.413363e-02	ci left: 2.103351e-01	ci right 2.266292e-01	k: 2184	n:10000
FBLN1   10000 perm   2 sec   (5284 perm/sec)   p_kst 2.184000e-01   p_cons 6.342000e-01   p_joint 3.104000e-01

Outputting figure to mutsig2_images.part000000000063/FBLN1.7_2660_10000_0.2184_0.6342_0.3104.png
                gene_name: FBLN1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 27 percent done.
FBXL13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.579244e-02	ci left: 3.211817e-01	ci right 3.397172e-01	k: 3304	n:10000
Cons ci ratio: 3.029653e-02	ci left: 6.164309e-01	ci right 6.354957e-01	k: 6260	n:10000
KS ci ratio: 9.792711e-02	ci left: 1.312962e-01	ci right 1.449153e-01	k: 1380	n:10000
FBXL13   10000 perm   2 sec   (5011 perm/sec)   p_kst 1.380000e-01   p_cons 6.260000e-01   p_joint 3.304000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL13.6_2280_10000_0.138_0.626_0.3304.png
                gene_name: FBXL13
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 29 percent done.
FBXL21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.726746e-02	ci left: 2.448978e-01	ci right 2.620461e-01	k: 2534	n:10000
Cons ci ratio: 8.537640e-02	ci left: 1.666153e-01	ci right 1.815750e-01	k: 1740	n:10000
KS ci ratio: 9.918053e-02	ci left: 1.283593e-01	ci right 1.418540e-01	k: 1350	n:10000
FBXL21   10000 perm   2 sec   (5640 perm/sec)   p_kst 1.350000e-01   p_cons 1.740000e-01   p_joint 2.534000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL21.6_1321_10000_0.135_0.174_0.2534.png
                gene_name: FBXL21
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 30 percent done.
FBXO42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.058784e-02	ci left: 2.273104e-01	ci right 2.440439e-01	k: 2356	n:10000
Cons ci ratio: 7.738372e-02	ci left: 1.962376e-01	ci right 2.121351e-01	k: 2041	n:10000
KS ci ratio: 5.677757e-02	ci left: 3.135397e-01	ci right 3.319637e-01	k: 3227	n:10000
FBXO42   10000 perm   2 sec   (5906 perm/sec)   p_kst 3.227000e-01   p_cons 2.041000e-01   p_joint 2.356000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO42.6_2190_10000_0.3227_0.2041_0.2356.png
                gene_name: FBXO42
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 32 percent done.
FARP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.426881e-02	ci left: 7.140138e-01	ci right 7.316562e-01	k: 7229	n:10000
Cons ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
KS ci ratio: 3.453175e-02	ci left: 5.532111e-01	ci right 5.727522e-01	k: 5630	n:10000
FARP2   10000 perm   2 sec   (5476 perm/sec)   p_kst 5.630000e-01   p_cons 5.242000e-01   p_joint 7.229000e-01

Outputting figure to mutsig2_images.part000000000063/FARP2.5_3269_10000_0.563_0.5242_0.7229.png
                gene_name: FARP2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 33 percent done.
FARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.262572e-02	ci left: 7.414922e-01	ci right 7.585620e-01	k: 7501	n:10000
KS ci ratio: 3.334700e-02	ci left: 5.703546e-01	ci right 5.897987e-01	k: 5801	n:10000
FARS2   10000 perm   2 sec   (4864 perm/sec)   p_kst 5.801000e-01   p_cons 7.501000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FARS2.5_1380_10000_0.5801_0.7501_1.png
                gene_name: FARS2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
FASTKD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.077635e-02	ci left: 7.724591e-01	ci right 7.887771e-01	k: 7807	n:10000
KS ci ratio: 1.088336e-02	ci left: 9.232741e-01	ci right 9.334747e-01	k: 9285	n:10000
FASTKD2   10000 perm   2 sec   (5502 perm/sec)   p_kst 9.285000e-01   p_cons 7.807000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FASTKD2.5_2177_10000_0.9285_0.7807_1.png
                gene_name: FASTKD2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
FBXO11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.819690e-02	ci left: 3.029251e-01	ci right 3.211845e-01	k: 3120	n:10000
Cons ci ratio: 4.803081e-02	ci left: 3.900798e-01	ci right 4.093787e-01	k: 3997	n:10000
KS ci ratio: 6.661620e-02	ci left: 2.485560e-01	ci right 2.657857e-01	k: 2571	n:10000
FBXO11   10000 perm   2 sec   (5471 perm/sec)   p_kst 2.571000e-01   p_cons 3.997000e-01   p_joint 3.120000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO11.5_2966_10000_0.2571_0.3997_0.312.png
                gene_name: FBXO11
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 38 percent done.
FBXO15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.319447e-01	ci left: 7.572512e-02	ci right 8.652038e-02	k: 810	n:10000
Cons ci ratio: 4.562496e-02	ci left: 4.148854e-01	ci right 4.343585e-01	k: 4246	n:10000
KS ci ratio: 1.668597e-01	ci left: 4.792139e-02	ci right 5.674170e-02	k: 522	n:10000
FBXO15   10000 perm   2 sec   (5046 perm/sec)   p_kst 5.220000e-02   p_cons 4.246000e-01   p_joint 8.100000e-02

Joint ci ratio: 8.253650e-02	ci left: 9.715154e-02	ci right 1.055648e-01	k: 2026	n:20000
Cons ci ratio: 3.327886e-02	ci left: 4.027234e-01	ci right 4.164029e-01	k: 8191	n:20000
KS ci ratio: 1.197522e-01	ci left: 4.779719e-02	ci right 5.393423e-02	k: 1016	n:20000
FBXO15   20000 perm   4 sec   (4803 perm/sec)   p_kst 5.080000e-02   p_cons 4.095500e-01   p_joint 1.013000e-01

Joint ci ratio: 6.457325e-02	ci left: 1.058563e-01	ci right 1.129529e-01	k: 3281	n:30000
Cons ci ratio: 2.593911e-02	ci left: 4.265845e-01	ci right 4.378287e-01	k: 12966	n:30000
KS ci ratio: 9.813429e-02	ci left: 4.801652e-02	ci right 5.300432e-02	k: 1514	n:30000
FBXO15   30000 perm   6 sec   (4732 perm/sec)   p_kst 5.046667e-02   p_cons 4.322000e-01   p_joint 1.093667e-01

Outputting figure to mutsig2_images.part000000000063/FBXO15.5_1573_30000_0.050467_0.4322_0.10937.png
                gene_name: FBXO15
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 40 percent done.
FBXO24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.092731e-02	ci left: 6.066862e-01	ci right 6.258460e-01	k: 6163	n:10000
Cons ci ratio: 6.038129e-02	ci left: 2.874598e-01	ci right 3.054589e-01	k: 2964	n:10000
KS ci ratio: 2.289722e-02	ci left: 7.369431e-01	ci right 7.541136e-01	k: 7456	n:10000
FBXO24   10000 perm   2 sec   (5293 perm/sec)   p_kst 7.456000e-01   p_cons 2.964000e-01   p_joint 6.163000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO24.5_1940_10000_0.7456_0.2964_0.6163.png
                gene_name: FBXO24
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 41 percent done.
FBXO32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.496310e-02	ci left: 1.679914e-01	ci right 1.829981e-01	k: 1754	n:10000
Cons ci ratio: 1.495415e-02	ci left: 8.663151e-01	ci right 8.794668e-01	k: 8730	n:10000
KS ci ratio: 1.227782e-01	ci left: 8.679344e-02	ci right 9.824521e-02	k: 924	n:10000
FBXO32   10000 perm   2 sec   (6048 perm/sec)   p_kst 9.240000e-02   p_cons 8.730000e-01   p_joint 1.754000e-01

Joint ci ratio: 6.032916e-02	ci left: 1.690156e-01	ci right 1.795793e-01	k: 3485	n:20000
Cons ci ratio: 1.045370e-02	ci left: 8.708448e-01	ci right 8.800458e-01	k: 17510	n:20000
KS ci ratio: 8.493493e-02	ci left: 9.214736e-02	ci right 1.003705e-01	k: 1924	n:20000
FBXO32   20000 perm   4 sec   (5110 perm/sec)   p_kst 9.620000e-02   p_cons 8.755000e-01   p_joint 1.742500e-01

Outputting figure to mutsig2_images.part000000000063/FBXO32.5_1104_20000_0.0962_0.8755_0.17425.png
                gene_name: FBXO32
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 43 percent done.
FBXO38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.526634e-02	ci left: 2.563695e-01	ci right 2.737676e-01	k: 2650	n:10000
Cons ci ratio: 6.000711e-02	ci left: 2.900365e-01	ci right 3.080807e-01	k: 2990	n:10000
KS ci ratio: 6.013616e-02	ci left: 2.891445e-01	ci right 3.071732e-01	k: 2981	n:10000
FBXO38   10000 perm   2 sec   (4455 perm/sec)   p_kst 2.981000e-01   p_cons 2.990000e-01   p_joint 2.650000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO38.5_3651_10000_0.2981_0.299_0.265.png
                gene_name: FBXO38
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 44 percent done.
FBXO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.892452e-02	ci left: 2.359040e-01	ci right 2.528451e-01	k: 2443	n:10000
Cons ci ratio: 2.217497e-01	ci left: 2.693317e-02	ci right 3.374407e-02	k: 302	n:10000
KS ci ratio: 3.618968e-02	ci left: 5.299709e-01	ci right 5.496059e-01	k: 5398	n:10000
FBXO4   10000 perm   2 sec   (5630 perm/sec)   p_kst 5.398000e-01   p_cons 3.020000e-02   p_joint 2.443000e-01

Joint ci ratio: 7.725382e-02	ci left: 1.096268e-01	ci right 1.184858e-01	k: 2280	n:20000
Cons ci ratio: 1.606734e-01	ci left: 2.657390e-02	ci right 3.126439e-02	k: 577	n:20000
KS ci ratio: 2.585550e-02	ci left: 5.277576e-01	ci right 5.416323e-01	k: 10694	n:20000
FBXO4   20000 perm   4 sec   (5018 perm/sec)   p_kst 5.347000e-01   p_cons 2.885000e-02   p_joint 1.140000e-01

Joint ci ratio: 7.333081e-02	ci left: 8.376867e-02	ci right 9.017824e-02	k: 2608	n:30000
Cons ci ratio: 1.310347e-01	ci left: 2.706564e-02	ci right 3.089297e-02	k: 868	n:30000
KS ci ratio: 2.108173e-02	ci left: 5.297364e-01	ci right 5.410567e-01	k: 16062	n:30000
FBXO4   30000 perm   6 sec   (4743 perm/sec)   p_kst 5.354000e-01   p_cons 2.893333e-02   p_joint 8.693333e-02

Joint ci ratio: 6.026672e-02	ci left: 9.276003e-02	ci right 9.854882e-02	k: 3825	n:40000
Cons ci ratio: 1.151626e-01	ci left: 2.652662e-02	ci right 2.979236e-02	k: 1125	n:40000
KS ci ratio: 1.833196e-02	ci left: 5.284712e-01	ci right 5.382739e-01	k: 21335	n:40000
FBXO4   40000 perm   9 sec   (4666 perm/sec)   p_kst 5.333750e-01   p_cons 2.812500e-02   p_joint 9.562500e-02

Joint ci ratio: 5.681881e-02	ci left: 8.444497e-02	ci right 8.940311e-02	k: 4345	n:50000
Cons ci ratio: 1.027609e-01	ci left: 2.682491e-02	ci right 2.975020e-02	k: 1413	n:50000
KS ci ratio: 1.645924e-02	ci left: 5.270944e-01	ci right 5.358620e-01	k: 26574	n:50000
FBXO4   50000 perm   11 sec   (4472 perm/sec)   p_kst 5.314800e-01   p_cons 2.826000e-02   p_joint 8.690000e-02

Joint ci ratio: 4.512955e-02	ci left: 1.091735e-01	ci right 1.142308e-01	k: 6701	n:60000
Cons ci ratio: 9.032774e-02	ci left: 2.905698e-02	ci right 3.182202e-02	k: 1825	n:60000
KS ci ratio: 1.501558e-02	ci left: 5.277975e-01	ci right 5.357994e-01	k: 31908	n:60000
FBXO4   60000 perm   14 sec   (4420 perm/sec)   p_kst 5.318000e-01   p_cons 3.041667e-02   p_joint 1.116833e-01

Outputting figure to mutsig2_images.part000000000063/FBXO4.5_1218_60000_0.5318_0.030417_0.11168.png
                gene_name: FBXO4
               theta_stop: 0.090 
                    nperm: 60000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 46 percent done.
FAR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.732877e-02	ci left: 6.636054e-01	ci right 6.820938e-01	k: 6729	n:10000
Cons ci ratio: 7.067756e-03	ci left: 9.649925e-01	ci right 9.719311e-01	k: 9686	n:10000
KS ci ratio: 3.646732e-02	ci left: 5.261663e-01	ci right 5.458127e-01	k: 5360	n:10000
FAR2   10000 perm   2 sec   (4375 perm/sec)   p_kst 5.360000e-01   p_cons 9.686000e-01   p_joint 6.729000e-01

Outputting figure to mutsig2_images.part000000000063/FAR2.4_1592_10000_0.536_0.9686_0.6729.png
                gene_name: FAR2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 48 percent done.
FBLN7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.769225e-02	ci left: 3.934654e-01	ci right 4.127911e-01	k: 4031	n:10000
KS ci ratio: 1.146199e-02	ci left: 9.158488e-01	ci right 9.265043e-01	k: 9213	n:10000
FBLN7   10000 perm   2 sec   (6206 perm/sec)   p_kst 9.213000e-01   p_cons 4.031000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FBLN7.4_1352_10000_0.9213_0.4031_1.png
                gene_name: FBLN7
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
FBXL17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
Cons ci ratio: 2.264156e-01	ci left: 2.579881e-02	ci right 3.247924e-02	k: 290	n:10000
KS ci ratio: 2.366646e-01	ci left: 2.353468e-02	ci right 2.994503e-02	k: 266	n:10000
FBXL17   10000 perm   2 sec   (5771 perm/sec)   p_kst 2.660000e-02   p_cons 2.900000e-02   p_joint 1.170000e-02

Joint ci ratio: 3.400560e-01	ci left: 5.479249e-03	ci right 7.767742e-03	k: 131	n:20000
Cons ci ratio: 1.587049e-01	ci left: 2.724667e-02	ci right 3.199140e-02	k: 591	n:20000
KS ci ratio: 1.640659e-01	ci left: 2.546943e-02	ci right 3.006924e-02	k: 554	n:20000
FBXL17   20000 perm   4 sec   (5065 perm/sec)   p_kst 2.770000e-02   p_cons 2.955000e-02   p_joint 6.550000e-03

Joint ci ratio: 3.081041e-01	ci left: 4.540680e-03	ci right 6.223961e-03	k: 160	n:30000
Cons ci ratio: 1.284692e-01	ci left: 2.816320e-02	ci right 3.206184e-02	k: 902	n:30000
KS ci ratio: 1.326147e-01	ci left: 2.642037e-02	ci right 3.020505e-02	k: 848	n:30000
FBXL17   30000 perm   6 sec   (4746 perm/sec)   p_kst 2.826667e-02   p_cons 3.006667e-02   p_joint 5.333333e-03

Joint ci ratio: 1.493757e-01	ci left: 1.565950e-02	ci right 1.821133e-02	k: 676	n:40000
Cons ci ratio: 1.106436e-01	ci left: 2.873917e-02	ci right 3.212945e-02	k: 1216	n:40000
KS ci ratio: 1.167184e-01	ci left: 2.582210e-02	ci right 2.904700e-02	k: 1096	n:40000
FBXL17   40000 perm   9 sec   (4656 perm/sec)   p_kst 2.740000e-02   p_cons 3.040000e-02   p_joint 1.690000e-02

Joint ci ratio: 1.144092e-01	ci left: 2.162605e-02	ci right 2.426974e-02	k: 1146	n:50000
Cons ci ratio: 1.034786e-01	ci left: 2.645445e-02	ci right 2.936071e-02	k: 1394	n:50000
KS ci ratio: 1.026489e-01	ci left: 2.688341e-02	ci right 2.981169e-02	k: 1416	n:50000
FBXL17   50000 perm   11 sec   (4572 perm/sec)   p_kst 2.832000e-02   p_cons 2.788000e-02   p_joint 2.292000e-02

Joint ci ratio: 1.197357e-01	ci left: 1.649821e-02	ci right 1.861550e-02	k: 1052	n:60000
Cons ci ratio: 9.397299e-02	ci left: 2.685735e-02	ci right 2.952188e-02	k: 1690	n:60000
KS ci ratio: 9.428903e-02	ci left: 2.667822e-02	ci right 2.933437e-02	k: 1679	n:60000
FBXL17   60000 perm   14 sec   (4436 perm/sec)   p_kst 2.798333e-02   p_cons 2.816667e-02   p_joint 1.753333e-02

Joint ci ratio: 1.183016e-01	ci left: 1.452853e-02	ci right 1.636910e-02	k: 1080	n:70000
Cons ci ratio: 8.422728e-02	ci left: 2.874866e-02	ci right 3.129049e-02	k: 2100	n:70000
KS ci ratio: 8.727187e-02	ci left: 2.679034e-02	ci right 2.924899e-02	k: 1960	n:70000
FBXL17   70000 perm   16 sec   (4377 perm/sec)   p_kst 2.800000e-02   p_cons 3.000000e-02   p_joint 1.542857e-02

Joint ci ratio: 9.667591e-02	ci left: 1.916308e-02	ci right 2.112193e-02	k: 1610	n:80000
Cons ci ratio: 7.890856e-02	ci left: 2.874291e-02	ci right 3.111635e-02	k: 2393	n:80000
KS ci ratio: 8.156325e-02	ci left: 2.691672e-02	ci right 2.921768e-02	k: 2244	n:80000
FBXL17   80000 perm   19 sec   (4217 perm/sec)   p_kst 2.805000e-02   p_cons 2.991250e-02   p_joint 2.012500e-02

Outputting figure to mutsig2_images.part000000000063/FBXL17.4_2142_80000_0.02805_0.029913_0.020125.png
                gene_name: FBXL17
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 51 percent done.
FBXO21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.580541e-02	ci left: 5.352782e-01	ci right 5.548955e-01	k: 5451	n:10000
Cons ci ratio: 6.241010e-02	ci left: 2.739874e-01	ci right 2.917393e-01	k: 2828	n:10000
KS ci ratio: 4.261923e-02	ci left: 4.483979e-01	ci right 4.680265e-01	k: 4582	n:10000
FBXO21   10000 perm   2 sec   (5443 perm/sec)   p_kst 4.582000e-01   p_cons 2.828000e-01   p_joint 5.451000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO21.4_1935_10000_0.4582_0.2828_0.5451.png
                gene_name: FBXO21
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 52 percent done.
FBXO22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.252572e-02	ci left: 5.824925e-01	ci right 6.018537e-01	k: 5922	n:10000
Cons ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
KS ci ratio: 3.504683e-02	ci left: 5.458961e-01	ci right 5.654714e-01	k: 5557	n:10000
FBXO22   10000 perm   2 sec   (6113 perm/sec)   p_kst 5.557000e-01   p_cons 3.885000e-01   p_joint 5.922000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO22.4_1277_10000_0.5557_0.3885_0.5922.png
                gene_name: FBXO22
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 54 percent done.
FBXO30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.134190e-01	ci left: 1.006167e-01	ci right 1.128135e-01	k: 1066	n:10000
Cons ci ratio: 2.035729e-02	ci left: 7.794504e-01	ci right 7.955817e-01	k: 7876	n:10000
KS ci ratio: 1.757246e-01	ci left: 4.322176e-02	ci right 5.164440e-02	k: 473	n:10000
FBXO30   10000 perm   2 sec   (5440 perm/sec)   p_kst 4.730000e-02   p_cons 7.876000e-01   p_joint 1.066000e-01

Joint ci ratio: 9.678552e-02	ci left: 7.211979e-02	ci right 7.950409e-02	k: 1515	n:20000
Cons ci ratio: 1.418360e-02	ci left: 7.868126e-01	ci right 7.981022e-01	k: 15850	n:20000
KS ci ratio: 1.265892e-01	ci left: 4.284699e-02	ci right 4.868599e-02	k: 914	n:20000
FBXO30   20000 perm   4 sec   (4930 perm/sec)   p_kst 4.570000e-02   p_cons 7.925000e-01   p_joint 7.575000e-02

Joint ci ratio: 7.393769e-02	ci left: 8.249048e-02	ci right 8.885670e-02	k: 2569	n:30000
Cons ci ratio: 1.158785e-02	ci left: 7.876647e-01	ci right 7.968786e-01	k: 23769	n:30000
KS ci ratio: 1.036178e-01	ci left: 4.316924e-02	ci right 4.791927e-02	k: 1365	n:30000
FBXO30   30000 perm   6 sec   (4707 perm/sec)   p_kst 4.550000e-02   p_cons 7.923000e-01   p_joint 8.563333e-02

Joint ci ratio: 6.507264e-02	ci left: 8.046201e-02	ci right 8.589868e-02	k: 3326	n:40000
Cons ci ratio: 9.606774e-03	ci left: 8.023925e-01	ci right 8.101630e-01	k: 32252	n:40000
KS ci ratio: 9.000385e-02	ci left: 4.323366e-02	ci right 4.733268e-02	k: 1810	n:40000
FBXO30   40000 perm   9 sec   (4480 perm/sec)   p_kst 4.525000e-02   p_cons 8.063000e-01   p_joint 8.315000e-02

Outputting figure to mutsig2_images.part000000000063/FBXO30.4_2246_40000_0.04525_0.8063_0.08315.png
                gene_name: FBXO30
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.086 

Current progress: 56 percent done.
FBXO31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.356197e-02	ci left: 3.393548e-01	ci right 3.581334e-01	k: 3487	n:10000
Cons ci ratio: 1.687404e-01	ci left: 4.686539e-02	ci right 5.559839e-02	k: 511	n:10000
KS ci ratio: 1.961910e-02	ci left: 7.917190e-01	ci right 8.075061e-01	k: 7997	n:10000
FBXO31   10000 perm   2 sec   (6085 perm/sec)   p_kst 7.997000e-01   p_cons 5.110000e-02   p_joint 3.487000e-01

Joint ci ratio: 5.197228e-02	ci left: 2.156617e-01	ci right 2.272194e-01	k: 4428	n:20000
Cons ci ratio: 1.201886e-01	ci left: 4.745718e-02	ci right 5.357434e-02	k: 1009	n:20000
KS ci ratio: 1.444408e-02	ci left: 7.807040e-01	ci right 7.921127e-01	k: 15729	n:20000
FBXO31   20000 perm   4 sec   (5127 perm/sec)   p_kst 7.864500e-01   p_cons 5.045000e-02   p_joint 2.214000e-01

Joint ci ratio: 4.473789e-02	ci left: 1.991878e-01	ci right 2.083363e-01	k: 6112	n:30000
Cons ci ratio: 9.981082e-02	ci left: 4.645421e-02	ci right 5.136696e-02	k: 1466	n:30000
KS ci ratio: 1.196009e-02	ci left: 7.769817e-01	ci right 7.863637e-01	k: 23451	n:30000
FBXO31   30000 perm   6 sec   (5035 perm/sec)   p_kst 7.817000e-01   p_cons 4.886667e-02   p_joint 2.037333e-01

Outputting figure to mutsig2_images.part000000000063/FBXO31.4_1656_30000_0.7817_0.048867_0.20373.png
                gene_name: FBXO31
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 57 percent done.
FBXO39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.291772e-02	ci left: 5.766736e-01	ci right 5.960761e-01	k: 5864	n:10000
Cons ci ratio: 2.546571e-02	ci left: 6.941377e-01	ci right 7.121438e-01	k: 7032	n:10000
KS ci ratio: 3.722167e-02	ci left: 5.159569e-01	ci right 5.356281e-01	k: 5258	n:10000
FBXO39   10000 perm   2 sec   (5099 perm/sec)   p_kst 5.258000e-01   p_cons 7.032000e-01   p_joint 5.864000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO39.4_1341_10000_0.5258_0.7032_0.5864.png
                gene_name: FBXO39
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 59 percent done.
FANCI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.340926e-02	ci left: 2.676508e-01	ci right 2.852796e-01	k: 2764	n:10000
Cons ci ratio: 1.947207e-02	ci left: 7.941537e-01	ci right 8.098700e-01	k: 8021	n:10000
KS ci ratio: 1.000383e-01	ci left: 1.264020e-01	ci right 1.398125e-01	k: 1330	n:10000
FANCI   10000 perm   2 sec   (5129 perm/sec)   p_kst 1.330000e-01   p_cons 8.021000e-01   p_joint 2.764000e-01

Joint ci ratio: 5.473606e-02	ci left: 1.984831e-01	ci right 2.097031e-01	k: 4081	n:20000
Cons ci ratio: 1.381840e-02	ci left: 7.953477e-01	ci right 8.064647e-01	k: 16019	n:20000
KS ci ratio: 7.140574e-02	ci left: 1.262544e-01	ci right 1.356532e-01	k: 2618	n:20000
FANCI   20000 perm   4 sec   (4785 perm/sec)   p_kst 1.309000e-01   p_cons 8.009500e-01   p_joint 2.040500e-01

Outputting figure to mutsig2_images.part000000000063/FANCI.3_4135_20000_0.1309_0.80095_0.20405.png
                gene_name: FANCI
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 60 percent done.
FANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.325114e-02	ci left: 8.913891e-01	ci right 9.033783e-01	k: 8975	n:10000
Cons ci ratio: 5.274675e-02	ci left: 3.463103e-01	ci right 3.651738e-01	k: 3557	n:10000
KS ci ratio: 2.457788e-02	ci left: 7.088662e-01	ci right 7.266068e-01	k: 7178	n:10000
FANK1   10000 perm   2 sec   (5838 perm/sec)   p_kst 7.178000e-01   p_cons 3.557000e-01   p_joint 8.975000e-01

Outputting figure to mutsig2_images.part000000000063/FANK1.3_1082_10000_0.7178_0.3557_0.8975.png
                gene_name: FANK1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 62 percent done.
FAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.820347e-02	ci left: 5.029509e-01	ci right 5.226417e-01	k: 5128	n:10000
Cons ci ratio: 7.564171e-02	ci left: 2.036295e-01	ci right 2.197388e-01	k: 2116	n:10000
KS ci ratio: 2.948673e-02	ci left: 6.290949e-01	ci right 6.480243e-01	k: 6386	n:10000
FAP   10000 perm   2 sec   (5871 perm/sec)   p_kst 6.386000e-01   p_cons 2.116000e-01   p_joint 5.128000e-01

Outputting figure to mutsig2_images.part000000000063/FAP.3_2387_10000_0.6386_0.2116_0.5128.png
                gene_name: FAP
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 63 percent done.
FBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.094976e-02	ci left: 4.682672e-01	ci right 4.879456e-01	k: 4781	n:10000
Cons ci ratio: 1.104622e-02	ci left: 9.212101e-01	ci right 9.315399e-01	k: 9265	n:10000
KS ci ratio: 5.187238e-02	ci left: 3.539639e-01	ci right 3.729157e-01	k: 3634	n:10000
FBL   10000 perm   2 sec   (6357 perm/sec)   p_kst 3.634000e-01   p_cons 9.265000e-01   p_joint 4.781000e-01

Outputting figure to mutsig2_images.part000000000063/FBL.3_1002_10000_0.3634_0.9265_0.4781.png
                gene_name: FBL
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 65 percent done.
FBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.650076e-03	ci left: 9.895002e-01	ci right 9.932050e-01	k: 9915	n:10000
KS ci ratio: 2.535597e-02	ci left: 6.959529e-01	ci right 7.139275e-01	k: 7050	n:10000
FBP2   10000 perm   2 sec   (6386 perm/sec)   p_kst 7.050000e-01   p_cons 9.915000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000063/FBP2.3_1048_10000_0.705_0.9915_1.png
                gene_name: FBP2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
FBXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.543320e-01	ci left: 5.590576e-02	ci right 6.535220e-02	k: 605	n:10000
Cons ci ratio: 6.154471e-02	ci left: 2.796327e-01	ci right 2.974906e-01	k: 2885	n:10000
KS ci ratio: 1.805768e-01	ci left: 4.092429e-02	ci right 4.914339e-02	k: 449	n:10000
FBXL2   10000 perm   2 sec   (6057 perm/sec)   p_kst 4.490000e-02   p_cons 2.885000e-01   p_joint 6.050000e-02

Joint ci ratio: 1.404254e-01	ci left: 3.486113e-02	ci right 4.017442e-02	k: 749	n:20000
Cons ci ratio: 4.343426e-02	ci left: 2.830715e-01	ci right 2.956898e-01	k: 5787	n:20000
KS ci ratio: 1.278387e-01	ci left: 4.202288e-02	ci right 4.781036e-02	k: 897	n:20000
FBXL2   20000 perm   4 sec   (5414 perm/sec)   p_kst 4.485000e-02   p_cons 2.893500e-01   p_joint 3.745000e-02

Joint ci ratio: 5.619379e-02	ci left: 1.356307e-01	ci right 1.435059e-01	k: 4186	n:30000
Cons ci ratio: 3.527522e-02	ci left: 2.864275e-01	ci right 2.967462e-01	k: 8747	n:30000
KS ci ratio: 1.054925e-01	ci left: 4.167427e-02	ci right 4.634789e-02	k: 1319	n:30000
FBXL2   30000 perm   6 sec   (4956 perm/sec)   p_kst 4.396667e-02   p_cons 2.915667e-01   p_joint 1.395333e-01

Joint ci ratio: 4.860806e-02	ci left: 1.364401e-01	ci right 1.432623e-01	k: 5593	n:40000
Cons ci ratio: 3.061594e-02	ci left: 2.862280e-01	ci right 2.951524e-01	k: 11627	n:40000
KS ci ratio: 9.157743e-02	ci left: 4.179070e-02	ci right 4.582587e-02	k: 1751	n:40000
FBXL2   40000 perm   8 sec   (4887 perm/sec)   p_kst 4.377500e-02   p_cons 2.906750e-01   p_joint 1.398250e-01

Outputting figure to mutsig2_images.part000000000063/FBXL2.3_1332_40000_0.043775_0.29068_0.13983.png
                gene_name: FBXL2
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 68 percent done.
FBXL20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.244472e-02	ci left: 7.445255e-01	ci right 7.615269e-01	k: 7531	n:10000
Cons ci ratio: 2.483577e-03	ci left: 9.946724e-01	ci right 9.972253e-01	k: 9961	n:10000
KS ci ratio: 4.153682e-02	ci left: 4.611763e-01	ci right 4.808406e-01	k: 4710	n:10000
FBXL20   10000 perm   2 sec   (5679 perm/sec)   p_kst 4.710000e-01   p_cons 9.961000e-01   p_joint 7.531000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL20.3_1371_10000_0.471_0.9961_0.7531.png
                gene_name: FBXL20
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 70 percent done.
FBXL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.354280e-01	ci left: 7.204238e-02	ci right 8.260541e-02	k: 772	n:10000
Cons ci ratio: 1.174650e-01	ci left: 9.428457e-02	ci right 1.061495e-01	k: 1001	n:10000
KS ci ratio: 2.228902e-01	ci left: 2.664945e-02	ci right 3.342800e-02	k: 299	n:10000
FBXL3   10000 perm   2 sec   (5982 perm/sec)   p_kst 2.990000e-02   p_cons 1.001000e-01   p_joint 7.720000e-02

Joint ci ratio: 1.520808e-01	ci left: 2.970034e-02	ci right 3.463690e-02	k: 642	n:20000
Cons ci ratio: 8.313105e-02	ci left: 9.587565e-02	ci right 1.042410e-01	k: 2000	n:20000
KS ci ratio: 1.591209e-01	ci left: 2.710248e-02	ci right 3.183564e-02	k: 588	n:20000
FBXL3   20000 perm   4 sec   (5148 perm/sec)   p_kst 2.940000e-02   p_cons 1.000000e-01   p_joint 3.210000e-02

Joint ci ratio: 1.303413e-01	ci left: 2.735610e-02	ci right 3.120245e-02	k: 877	n:30000
Cons ci ratio: 6.777008e-02	ci left: 9.692287e-02	ci right 1.037547e-01	k: 3009	n:30000
KS ci ratio: 1.283227e-01	ci left: 2.822778e-02	ci right 3.213057e-02	k: 904	n:30000
FBXL3   30000 perm   6 sec   (5008 perm/sec)   p_kst 3.013333e-02   p_cons 1.003000e-01   p_joint 2.923333e-02

Joint ci ratio: 8.971882e-02	ci left: 4.350276e-02	ci right 4.761354e-02	k: 1821	n:40000
Cons ci ratio: 6.700245e-02	ci left: 7.617781e-02	ci right 8.148352e-02	k: 3152	n:40000
KS ci ratio: 1.113534e-01	ci left: 2.837429e-02	ci right 3.174439e-02	k: 1201	n:40000
FBXL3   40000 perm   8 sec   (4925 perm/sec)   p_kst 3.002500e-02   p_cons 7.880000e-02   p_joint 4.552500e-02

Joint ci ratio: 1.029860e-01	ci left: 2.670792e-02	ci right 2.962721e-02	k: 1407	n:50000
Cons ci ratio: 6.006345e-02	ci left: 7.613733e-02	ci right 8.087175e-02	k: 3924	n:50000
KS ci ratio: 9.978618e-02	ci left: 2.844404e-02	ci right 3.145086e-02	k: 1496	n:50000
FBXL3   50000 perm   10 sec   (4800 perm/sec)   p_kst 2.992000e-02   p_cons 7.848000e-02   p_joint 2.814000e-02

Joint ci ratio: 1.028239e-01	ci left: 2.243262e-02	ci right 2.488042e-02	k: 1418	n:60000
Cons ci ratio: 5.510368e-02	ci left: 7.563595e-02	ci right 7.993833e-02	k: 4666	n:60000
KS ci ratio: 9.195038e-02	ci left: 2.804652e-02	ci right 3.076592e-02	k: 1763	n:60000
FBXL3   60000 perm   13 sec   (4630 perm/sec)   p_kst 2.938333e-02   p_cons 7.776667e-02   p_joint 2.363333e-02

Joint ci ratio: 9.078570e-02	ci left: 2.476382e-02	ci right 2.713284e-02	k: 1815	n:70000
Cons ci ratio: 5.113761e-02	ci left: 7.545904e-02	ci right 7.943321e-02	k: 5420	n:70000
KS ci ratio: 8.510830e-02	ci left: 2.816100e-02	ci right 3.067821e-02	k: 2058	n:70000
FBXL3   70000 perm   15 sec   (4537 perm/sec)   p_kst 2.940000e-02   p_cons 7.742857e-02   p_joint 2.592857e-02

Outputting figure to mutsig2_images.part000000000063/FBXL3.3_1303_70000_0.0294_0.077429_0.025929.png
                gene_name: FBXL3
               theta_stop: 0.091 
                    nperm: 70000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 71 percent done.
FBXO27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.189885e-01	ci left: 9.204578e-02	ci right 1.037896e-01	k: 978	n:10000
Cons ci ratio: 2.556943e-02	ci left: 6.924235e-01	ci right 7.104591e-01	k: 7015	n:10000
KS ci ratio: 3.187220e-01	ci left: 1.252543e-02	ci right 1.736316e-02	k: 148	n:10000
FBXO27   10000 perm   2 sec   (6213 perm/sec)   p_kst 1.480000e-02   p_cons 7.015000e-01   p_joint 9.780000e-02

Joint ci ratio: 1.195665e-01	ci left: 4.794292e-02	ci right 5.408845e-02	k: 1019	n:20000
Cons ci ratio: 1.813262e-02	ci left: 6.938970e-01	ci right 7.066447e-01	k: 14006	n:20000
KS ci ratio: 2.269270e-01	ci left: 1.303072e-02	ci right 1.641252e-02	k: 293	n:20000
FBXO27   20000 perm   4 sec   (5493 perm/sec)   p_kst 1.465000e-02   p_cons 7.003000e-01   p_joint 5.095000e-02

Joint ci ratio: 8.733012e-02	ci left: 6.017846e-02	ci right 6.570655e-02	k: 1887	n:30000
Cons ci ratio: 1.484063e-02	ci left: 6.940752e-01	ci right 7.044862e-01	k: 20979	n:30000
KS ci ratio: 1.872352e-01	ci left: 1.305063e-02	ci right 1.577793e-02	k: 431	n:30000
FBXO27   30000 perm   6 sec   (5241 perm/sec)   p_kst 1.436667e-02   p_cons 6.993000e-01   p_joint 6.290000e-02

Joint ci ratio: 7.441278e-02	ci left: 6.245584e-02	ci right 6.730756e-02	k: 2594	n:40000
Cons ci ratio: 1.279286e-02	ci left: 6.967375e-01	ci right 7.057332e-01	k: 28050	n:40000
KS ci ratio: 1.625812e-01	ci left: 1.315938e-02	ci right 1.551190e-02	k: 572	n:40000
FBXO27   40000 perm   8 sec   (5030 perm/sec)   p_kst 1.430000e-02   p_cons 7.012500e-01   p_joint 6.485000e-02

Joint ci ratio: 7.036653e-02	ci left: 5.637992e-02	ci right 6.051153e-02	k: 2921	n:50000
Cons ci ratio: 1.137545e-02	ci left: 6.996758e-01	ci right 7.077005e-01	k: 35185	n:50000
KS ci ratio: 1.479798e-01	ci left: 1.281502e-02	ci right 1.488199e-02	k: 691	n:50000
FBXO27   50000 perm   10 sec   (4946 perm/sec)   p_kst 1.382000e-02   p_cons 7.037000e-01   p_joint 5.842000e-02

Joint ci ratio: 7.481761e-02	ci left: 4.211078e-02	ci right 4.540020e-02	k: 2624	n:60000
Cons ci ratio: 1.036857e-02	ci left: 7.006638e-01	ci right 7.079831e-01	k: 42260	n:60000
KS ci ratio: 1.352851e-01	ci left: 1.286567e-02	ci right 1.474845e-02	k: 827	n:60000
FBXO27   60000 perm   12 sec   (4820 perm/sec)   p_kst 1.378333e-02   p_cons 7.043333e-01   p_joint 4.373333e-02

Joint ci ratio: 7.626211e-02	ci left: 3.498264e-02	ci right 3.777024e-02	k: 2545	n:70000
Cons ci ratio: 9.594282e-03	ci left: 7.011617e-01	ci right 7.079356e-01	k: 49319	n:70000
KS ci ratio: 1.266531e-01	ci left: 1.264433e-02	ci right 1.436777e-02	k: 944	n:70000
FBXO27   70000 perm   15 sec   (4636 perm/sec)   p_kst 1.348571e-02   p_cons 7.045571e-01   p_joint 3.635714e-02

Joint ci ratio: 6.606760e-02	ci left: 4.075572e-02	ci right 4.355261e-02	k: 3371	n:80000
Cons ci ratio: 8.976408e-03	ci left: 7.012996e-01	ci right 7.076356e-01	k: 56358	n:80000
KS ci ratio: 1.186403e-01	ci left: 1.266321e-02	ci right 1.427236e-02	k: 1076	n:80000
FBXO27   80000 perm   17 sec   (4571 perm/sec)   p_kst 1.345000e-02   p_cons 7.044750e-01   p_joint 4.213750e-02

Joint ci ratio: 5.555984e-02	ci left: 5.095308e-02	ci right 5.387586e-02	k: 4716	n:90000
Cons ci ratio: 8.459375e-03	ci left: 7.016630e-01	ci right 7.076349e-01	k: 63419	n:90000
KS ci ratio: 1.118377e-01	ci left: 1.271299e-02	ci right 1.422972e-02	k: 1211	n:90000
FBXO27   90000 perm   20 sec   (4468 perm/sec)   p_kst 1.345556e-02   p_cons 7.046556e-01   p_joint 5.240000e-02

Joint ci ratio: 5.261931e-02	ci left: 5.119477e-02	ci right 5.397125e-02	k: 5257	n:100000
Cons ci ratio: 8.030586e-03	ci left: 7.015408e-01	ci right 7.072073e-01	k: 70438	n:100000
KS ci ratio: 1.058466e-01	ci left: 1.281335e-02	ci right 1.425507e-02	k: 1352	n:100000
FBXO27   100000 perm   23 sec   (4401 perm/sec)   p_kst 1.352000e-02   p_cons 7.043800e-01   p_joint 5.257000e-02

Joint ci ratio: 4.907330e-02	ci left: 5.348023e-02	ci right 5.617966e-02	k: 6030	n:110000
Cons ci ratio: 7.648811e-03	ci left: 7.021128e-01	ci right 7.075128e-01	k: 77530	n:110000
KS ci ratio: 1.014508e-01	ci left: 1.271110e-02	ci right 1.407837e-02	k: 1472	n:110000
FBXO27   110000 perm   25 sec   (4323 perm/sec)   p_kst 1.338182e-02   p_cons 7.048182e-01   p_joint 5.481818e-02

Joint ci ratio: 4.988363e-02	ci left: 4.771950e-02	ci right 5.016902e-02	k: 5872	n:120000
Cons ci ratio: 7.336704e-03	ci left: 7.014583e-01	ci right 7.066319e-01	k: 84486	n:120000
KS ci ratio: 9.688483e-02	ci left: 1.280587e-02	ci right 1.411780e-02	k: 1614	n:120000
FBXO27   120000 perm   28 sec   (4256 perm/sec)   p_kst 1.345000e-02   p_cons 7.040500e-01   p_joint 4.893333e-02

Outputting figure to mutsig2_images.part000000000063/FBXO27.3_872_120000_0.01345_0.70405_0.048933.png
                gene_name: FBXO27
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.050 

Current progress: 73 percent done.
FBXO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.169719e-02	ci left: 9.127588e-01	ci right 9.235961e-01	k: 9183	n:10000
Cons ci ratio: 2.623654e-02	ci left: 6.814356e-01	ci right 6.996533e-01	k: 6906	n:10000
KS ci ratio: 1.922651e-02	ci left: 7.982126e-01	ci right 8.138088e-01	k: 8061	n:10000
FBXO3   10000 perm   2 sec   (5238 perm/sec)   p_kst 8.061000e-01   p_cons 6.906000e-01   p_joint 9.183000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO3.3_1469_10000_0.8061_0.6906_0.9183.png
                gene_name: FBXO3
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 75 percent done.
FBXO34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.460845e-02	ci left: 8.715273e-01	ci right 8.844516e-01	k: 8781	n:10000
Cons ci ratio: 4.034749e-02	ci left: 4.756597e-01	ci right 4.953487e-01	k: 4855	n:10000
KS ci ratio: 2.670404e-02	ci left: 6.737778e-01	ci right 6.921155e-01	k: 6830	n:10000
FBXO34   10000 perm   2 sec   (5785 perm/sec)   p_kst 6.830000e-01   p_cons 4.855000e-01   p_joint 8.781000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO34.3_2140_10000_0.683_0.4855_0.8781.png
                gene_name: FBXO34
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 76 percent done.
FBXO43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.462809e-02	ci left: 3.305146e-01	ci right 3.491788e-01	k: 3398	n:10000
Cons ci ratio: 1.079470e-01	ci left: 1.101767e-01	ci right 1.228477e-01	k: 1164	n:10000
KS ci ratio: 4.415312e-02	ci left: 4.309378e-01	ci right 4.504967e-01	k: 4407	n:10000
FBXO43   10000 perm   2 sec   (5841 perm/sec)   p_kst 4.407000e-01   p_cons 1.164000e-01   p_joint 3.398000e-01

Joint ci ratio: 2.799504e-02	ci left: 4.880470e-01	ci right 5.019545e-01	k: 9900	n:20000
Cons ci ratio: 7.638710e-02	ci left: 1.118880e-01	ci right 1.208239e-01	k: 2326	n:20000
KS ci ratio: 3.120153e-02	ci left: 4.341528e-01	ci right 4.479643e-01	k: 8821	n:20000
FBXO43   20000 perm   4 sec   (5185 perm/sec)   p_kst 4.410500e-01   p_cons 1.163000e-01   p_joint 4.950000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO43.3_2147_20000_0.44105_0.1163_0.495.png
                gene_name: FBXO43
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 78 percent done.
FBXO47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.215870e-02	ci left: 4.537880e-01	ci right 4.734332e-01	k: 4636	n:10000
Cons ci ratio: 1.688685e-02	ci left: 8.362290e-01	ci right 8.505703e-01	k: 8435	n:10000
KS ci ratio: 4.749465e-02	ci left: 3.954571e-01	ci right 4.147982e-01	k: 4051	n:10000
FBXO47   10000 perm   2 sec   (5792 perm/sec)   p_kst 4.051000e-01   p_cons 8.435000e-01   p_joint 4.636000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO47.3_1399_10000_0.4051_0.8435_0.4636.png
                gene_name: FBXO47
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 79 percent done.
FBXO5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.931618e-02	ci left: 1.884559e-01	ci right 2.041214e-01	k: 1962	n:10000
Cons ci ratio: 5.001892e-02	ci left: 3.708706e-01	ci right 3.899991e-01	k: 3804	n:10000
KS ci ratio: 1.230716e-01	ci left: 8.640461e-02	ci right 9.783428e-02	k: 920	n:10000
FBXO5   10000 perm   2 sec   (5290 perm/sec)   p_kst 9.200000e-02   p_cons 3.804000e-01   p_joint 1.962000e-01

Joint ci ratio: 6.439895e-02	ci left: 1.512431e-01	ci right 1.613570e-01	k: 3125	n:20000
Cons ci ratio: 3.548131e-02	ci left: 3.722196e-01	ci right 3.857156e-01	k: 7579	n:20000
KS ci ratio: 8.700051e-02	ci left: 8.812692e-02	ci right 9.619210e-02	k: 1842	n:20000
FBXO5   20000 perm   4 sec   (4777 perm/sec)   p_kst 9.210000e-02   p_cons 3.789500e-01   p_joint 1.562500e-01

Outputting figure to mutsig2_images.part000000000063/FBXO5.3_1364_20000_0.0921_0.37895_0.15625.png
                gene_name: FBXO5
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 81 percent done.
FAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.063385e-02	ci left: 6.112064e-01	ci right 6.303232e-01	k: 6208	n:10000
Cons ci ratio: 5.559135e-02	ci left: 3.227699e-01	ci right 3.413280e-01	k: 3320	n:10000
KS ci ratio: 3.032241e-02	ci left: 6.160289e-01	ci right 6.350979e-01	k: 6256	n:10000
FAS   10000 perm   2 sec   (5810 perm/sec)   p_kst 6.256000e-01   p_cons 3.320000e-01   p_joint 6.208000e-01

Outputting figure to mutsig2_images.part000000000063/FAS.2_1044_10000_0.6256_0.332_0.6208.png
                gene_name: FAS
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 83 percent done.
FASTKD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.091734e-03	ci left: 9.808076e-01	ci right 9.859052e-01	k: 9835	n:10000
Cons ci ratio: 4.979688e-02	ci left: 3.729600e-01	ci right 3.921085e-01	k: 3825	n:10000
KS ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
FASTKD5   10000 perm   2 sec   (5918 perm/sec)   p_kst 4.670000e-02   p_cons 3.825000e-01   p_joint 9.835000e-01

Joint ci ratio: 1.565755e-02	ci left: 7.521028e-01	ci right 7.640221e-01	k: 15162	n:20000
Cons ci ratio: 3.508513e-02	ci left: 3.775010e-01	ci right 3.910327e-01	k: 7685	n:20000
KS ci ratio: 1.268072e-01	ci left: 4.270154e-02	ci right 4.853149e-02	k: 911	n:20000
FASTKD5   20000 perm   4 sec   (4913 perm/sec)   p_kst 4.555000e-02   p_cons 3.842500e-01   p_joint 7.581000e-01

Joint ci ratio: 5.327707e-02	ci left: 1.487787e-01	ci right 1.569553e-01	k: 4585	n:30000
Cons ci ratio: 2.868925e-02	ci left: 3.780591e-01	ci right 3.890968e-01	k: 11507	n:30000
KS ci ratio: 1.041381e-01	ci left: 4.274667e-02	ci right 4.747526e-02	k: 1352	n:30000
FASTKD5   30000 perm   6 sec   (4721 perm/sec)   p_kst 4.506667e-02   p_cons 3.835667e-01   p_joint 1.528333e-01

Joint ci ratio: 4.614238e-02	ci left: 1.493116e-01	ci right 1.563888e-01	k: 6113	n:40000
Cons ci ratio: 2.485216e-02	ci left: 3.786812e-01	ci right 3.882358e-01	k: 15338	n:40000
KS ci ratio: 9.002989e-02	ci left: 4.320920e-02	ci right 4.730714e-02	k: 1809	n:40000
FASTKD5   40000 perm   9 sec   (4670 perm/sec)   p_kst 4.522500e-02   p_cons 3.834500e-01   p_joint 1.528250e-01

Outputting figure to mutsig2_images.part000000000063/FASTKD5.2_2299_40000_0.045225_0.38345_0.15282.png
                gene_name: FASTKD5
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 84 percent done.
FBF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.243397e-01	ci left: 8.475243e-02	ci right 9.608748e-02	k: 903	n:10000
Cons ci ratio: 2.473410e-01	ci left: 2.146516e-02	ci right 2.761609e-02	k: 244	n:10000
KS ci ratio: 1.445118e-02	ci left: 8.738790e-01	ci right 8.866985e-01	k: 8804	n:10000
FBF1   10000 perm   2 sec   (5025 perm/sec)   p_kst 8.804000e-01   p_cons 2.440000e-02   p_joint 9.030000e-02

Joint ci ratio: 1.769473e-01	ci left: 2.182763e-02	ci right 2.611230e-02	k: 478	n:20000
Cons ci ratio: 1.839540e-01	ci left: 2.015504e-02	ci right 2.428549e-02	k: 443	n:20000
KS ci ratio: 1.016160e-02	ci left: 8.769910e-01	ci right 8.859977e-01	k: 17631	n:20000
FBF1   20000 perm   5 sec   (4344 perm/sec)   p_kst 8.815500e-01   p_cons 2.215000e-02   p_joint 2.390000e-02

Joint ci ratio: 1.113569e-01	ci left: 3.745367e-02	ci right 4.190271e-02	k: 1189	n:30000
Cons ci ratio: 1.516017e-01	ci left: 2.014522e-02	ci right 2.348162e-02	k: 653	n:30000
KS ci ratio: 8.257506e-03	ci left: 8.788361e-01	ci right 8.861563e-01	k: 26476	n:30000
FBF1   30000 perm   7 sec   (4167 perm/sec)   p_kst 8.825333e-01   p_cons 2.176667e-02   p_joint 3.963333e-02

Joint ci ratio: 1.020128e-01	ci left: 3.378108e-02	ci right 3.743674e-02	k: 1423	n:40000
Cons ci ratio: 1.323819e-01	ci left: 2.002834e-02	ci right 2.289172e-02	k: 857	n:40000
KS ci ratio: 7.181506e-03	ci left: 8.784442e-01	ci right 8.848003e-01	k: 35266	n:40000
FBF1   40000 perm   10 sec   (4116 perm/sec)   p_kst 8.816500e-01   p_cons 2.142500e-02   p_joint 3.557500e-02

Joint ci ratio: 8.888798e-02	ci left: 3.577336e-02	ci right 3.912062e-02	k: 1871	n:50000
Cons ci ratio: 1.178739e-01	ci left: 2.036302e-02	ci right 2.293293e-02	k: 1081	n:50000
KS ci ratio: 6.424803e-03	ci left: 8.787359e-01	ci right 8.844197e-01	k: 44080	n:50000
FBF1   50000 perm   12 sec   (4034 perm/sec)   p_kst 8.816000e-01   p_cons 2.162000e-02   p_joint 3.742000e-02

Joint ci ratio: 1.030100e-01	ci left: 2.235138e-02	ci right 2.479500e-02	k: 1413	n:60000
Cons ci ratio: 1.083050e-01	ci left: 2.020826e-02	ci right 2.253836e-02	k: 1281	n:60000
KS ci ratio: 5.861228e-03	ci left: 8.791226e-01	ci right 8.843070e-01	k: 52904	n:60000
FBF1   60000 perm   15 sec   (4004 perm/sec)   p_kst 8.817333e-01   p_cons 2.135000e-02   p_joint 2.355000e-02

Joint ci ratio: 8.071019e-02	ci left: 3.128269e-02	ci right 3.392767e-02	k: 2281	n:70000
Cons ci ratio: 1.007771e-01	ci left: 2.008988e-02	ci right 2.223578e-02	k: 1480	n:70000
KS ci ratio: 5.422822e-03	ci left: 8.794574e-01	ci right 8.842537e-01	k: 61731	n:70000
FBF1   70000 perm   18 sec   (3945 perm/sec)   p_kst 8.818714e-01   p_cons 2.114286e-02   p_joint 3.258571e-02

Joint ci ratio: 7.555745e-02	ci left: 3.131877e-02	ci right 3.379028e-02	k: 2603	n:80000
Cons ci ratio: 9.431321e-02	ci left: 2.013967e-02	ci right 2.214526e-02	k: 1690	n:80000
KS ci ratio: 5.080995e-03	ci left: 8.792655e-01	ci right 8.837568e-01	k: 70522	n:80000
FBF1   80000 perm   21 sec   (3891 perm/sec)   p_kst 8.815250e-01   p_cons 2.112500e-02   p_joint 3.253750e-02

Outputting figure to mutsig2_images.part000000000063/FBF1.2_3514_80000_0.88153_0.021125_0.032537.png
                gene_name: FBF1
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 86 percent done.
FBLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.041866e-01	ci left: 1.175028e-01	ci right 1.305171e-01	k: 1239	n:10000
Cons ci ratio: 1.227782e-01	ci left: 8.679344e-02	ci right 9.824521e-02	k: 924	n:10000
KS ci ratio: 4.378784e-02	ci left: 4.350274e-01	ci right 4.546048e-01	k: 4448	n:10000
FBLN2   10000 perm   2 sec   (5150 perm/sec)   p_kst 4.448000e-01   p_cons 9.240000e-02   p_joint 1.239000e-01

Joint ci ratio: 8.797668e-02	ci left: 8.631360e-02	ci right 9.430597e-02	k: 1805	n:20000
Cons ci ratio: 8.697452e-02	ci left: 8.817594e-02	ci right 9.624307e-02	k: 1843	n:20000
KS ci ratio: 3.114464e-02	ci left: 4.350512e-01	ci right 4.488657e-01	k: 8839	n:20000
FBLN2   20000 perm   4 sec   (4700 perm/sec)   p_kst 4.419500e-01   p_cons 9.215000e-02   p_joint 9.025000e-02

Outputting figure to mutsig2_images.part000000000063/FBLN2.2_3765_20000_0.44195_0.09215_0.09025.png
                gene_name: FBLN2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.094 

Current progress: 87 percent done.
FBXL12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.655537e-02	ci left: 5.249650e-01	ci right 5.446147e-01	k: 5348	n:10000
Cons ci ratio: 5.045670e-02	ci left: 3.667920e-01	ci right 3.858801e-01	k: 3763	n:10000
KS ci ratio: 5.761920e-02	ci left: 3.071901e-01	ci right 3.255170e-01	k: 3163	n:10000
FBXL12   10000 perm   2 sec   (6380 perm/sec)   p_kst 3.163000e-01   p_cons 3.763000e-01   p_joint 5.348000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL12.2_993_10000_0.3163_0.3763_0.5348.png
                gene_name: FBXL12
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 89 percent done.
FBXL14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.608365e-02	ci left: 3.188987e-01	ci right 3.374015e-01	k: 3281	n:10000
Cons ci ratio: 1.425851e-02	ci left: 8.767431e-01	ci right 8.894328e-01	k: 8832	n:10000
KS ci ratio: 8.143879e-02	ci left: 1.803839e-01	ci right 1.957983e-01	k: 1880	n:10000
FBXL14   10000 perm   2 sec   (6416 perm/sec)   p_kst 1.880000e-01   p_cons 8.832000e-01   p_joint 3.281000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL14.2_1265_10000_0.188_0.8832_0.3281.png
                gene_name: FBXL14
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 90 percent done.
FBXL18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.728861e-02	ci left: 1.966317e-01	ci right 2.125408e-01	k: 2045	n:10000
Cons ci ratio: 1.016747e-01	ci left: 1.227823e-01	ci right 1.360344e-01	k: 1293	n:10000
KS ci ratio: 1.553508e-02	ci left: 8.574316e-01	ci right 8.709555e-01	k: 8643	n:10000
FBXL18   10000 perm   2 sec   (5455 perm/sec)   p_kst 8.643000e-01   p_cons 1.293000e-01   p_joint 2.045000e-01

Joint ci ratio: 5.716596e-02	ci left: 1.848801e-01	ci right 1.958101e-01	k: 3806	n:20000
Cons ci ratio: 7.231397e-02	ci left: 1.234484e-01	ci right 1.327600e-01	k: 2561	n:20000
KS ci ratio: 1.107286e-02	ci left: 8.575482e-01	ci right 8.671462e-01	k: 17248	n:20000
FBXL18   20000 perm   4 sec   (4875 perm/sec)   p_kst 8.624000e-01   p_cons 1.280500e-01   p_joint 1.903000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL18.2_2177_20000_0.8624_0.12805_0.1903.png
                gene_name: FBXL18
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 92 percent done.
FBXL19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.211965e-01	ci left: 8.893260e-02	ci right 1.005047e-01	k: 946	n:10000
Cons ci ratio: 1.164260e-02	ci left: 9.134796e-01	ci right 9.242749e-01	k: 9190	n:10000
KS ci ratio: 4.067840e-01	ci left: 7.332900e-03	ci right 1.116119e-02	k: 91	n:10000
FBXL19   10000 perm   2 sec   (5906 perm/sec)   p_kst 9.100000e-03   p_cons 9.190000e-01   p_joint 9.460000e-02

Joint ci ratio: 6.393895e-02	ci left: 1.531180e-01	ci right 1.632815e-01	k: 3163	n:20000
Cons ci ratio: 8.349091e-03	ci left: 9.129375e-01	ci right 9.206408e-01	k: 18337	n:20000
KS ci ratio: 2.793383e-01	ci left: 8.388326e-03	ci right 1.115700e-02	k: 194	n:20000
FBXL19   20000 perm   4 sec   (5238 perm/sec)   p_kst 9.700000e-03   p_cons 9.168500e-01   p_joint 1.581500e-01

Joint ci ratio: 5.923908e-02	ci left: 1.235808e-01	ci right 1.311582e-01	k: 3820	n:30000
Cons ci ratio: 6.790451e-03	ci left: 9.142617e-01	ci right 9.205239e-01	k: 27523	n:30000
KS ci ratio: 2.348645e-01	ci left: 8.119307e-03	ci right 1.031065e-02	k: 275	n:30000
FBXL19   30000 perm   6 sec   (4934 perm/sec)   p_kst 9.166667e-03   p_cons 9.174333e-01   p_joint 1.273333e-01

Joint ci ratio: 5.298879e-02	ci left: 1.171519e-01	ci right 1.235534e-01	k: 4813	n:40000
Cons ci ratio: 5.834141e-03	ci left: 9.159026e-01	ci right 9.212864e-01	k: 36745	n:40000
KS ci ratio: 2.042414e-01	ci left: 8.192693e-03	ci right 1.007960e-02	k: 364	n:40000
FBXL19   40000 perm   8 sec   (4749 perm/sec)   p_kst 9.100000e-03   p_cons 9.186250e-01   p_joint 1.203250e-01

Joint ci ratio: 2.452871e-02	ci left: 3.339331e-01	ci right 3.422457e-01	k: 16904	n:50000
Cons ci ratio: 5.409270e-03	ci left: 9.105766e-01	ci right 9.155353e-01	k: 45654	n:50000
KS ci ratio: 1.833396e-01	ci left: 8.228989e-03	ci right 9.908752e-03	k: 452	n:50000
FBXL19   50000 perm   11 sec   (4636 perm/sec)   p_kst 9.040000e-03   p_cons 9.130800e-01   p_joint 3.380800e-01

Joint ci ratio: 1.961980e-02	ci left: 3.955775e-01	ci right 4.034322e-01	k: 23970	n:60000
Cons ci ratio: 4.944537e-03	ci left: 9.105816e-01	ci right 9.151117e-01	k: 54772	n:60000
KS ci ratio: 1.657728e-01	ci left: 8.467520e-03	ci right 1.001384e-02	k: 553	n:60000
FBXL19   60000 perm   14 sec   (4417 perm/sec)   p_kst 9.216667e-03   p_cons 9.128667e-01   p_joint 3.995000e-01

Joint ci ratio: 2.065797e-02	ci left: 3.361483e-01	ci right 3.431792e-01	k: 23776	n:70000
Cons ci ratio: 4.575108e-03	ci left: 9.108446e-01	ci right 9.150354e-01	k: 63907	n:70000
KS ci ratio: 1.544843e-01	ci left: 8.409812e-03	ci right 9.831326e-03	k: 637	n:70000
FBXL19   70000 perm   16 sec   (4308 perm/sec)   p_kst 9.100000e-03   p_cons 9.129571e-01   p_joint 3.396571e-01

Joint ci ratio: 1.697413e-02	ci left: 3.965902e-01	ci right 4.033921e-01	k: 31999	n:80000
Cons ci ratio: 4.263275e-03	ci left: 9.115940e-01	ci right 9.155010e-01	k: 73085	n:80000
KS ci ratio: 1.426569e-01	ci left: 8.682620e-03	ci right 1.002832e-02	k: 747	n:80000
FBXL19   80000 perm   19 sec   (4197 perm/sec)   p_kst 9.337500e-03   p_cons 9.135625e-01   p_joint 3.999875e-01

Joint ci ratio: 1.559437e-02	ci left: 4.092589e-01	ci right 4.157023e-01	k: 37123	n:90000
Cons ci ratio: 4.016216e-03	ci left: 9.118353e-01	ci right 9.155158e-01	k: 82232	n:90000
KS ci ratio: 1.347004e-01	ci left: 8.693936e-03	ci right 9.960215e-03	k: 838	n:90000
FBXL19   90000 perm   22 sec   (4122 perm/sec)   p_kst 9.311111e-03   p_cons 9.136889e-01   p_joint 4.124778e-01

Joint ci ratio: 1.735915e-02	ci left: 3.347785e-01	ci right 3.406509e-01	k: 33771	n:100000
Cons ci ratio: 3.810557e-03	ci left: 9.119123e-01	ci right 9.154037e-01	k: 91367	n:100000
KS ci ratio: 1.273217e-01	ci left: 8.791812e-03	ci right 9.996902e-03	k: 938	n:100000
FBXL19   100000 perm   25 sec   (4074 perm/sec)   p_kst 9.380000e-03   p_cons 9.136700e-01   p_joint 3.377100e-01

Joint ci ratio: 1.657360e-02	ci left: 3.343153e-01	ci right 3.399115e-01	k: 37082	n:110000
Cons ci ratio: 3.625397e-03	ci left: 9.123369e-01	ci right 9.156594e-01	k: 100541	n:110000
KS ci ratio: 1.222295e-01	ci left: 8.697106e-03	ci right 9.838083e-03	k: 1018	n:110000
FBXL19   110000 perm   27 sec   (4001 perm/sec)   p_kst 9.254545e-03   p_cons 9.140091e-01   p_joint 3.371091e-01

Joint ci ratio: 1.588405e-02	ci left: 3.339844e-01	ci right 3.393402e-01	k: 40399	n:120000
Cons ci ratio: 3.467379e-03	ci left: 9.125760e-01	ci right 9.157540e-01	k: 109701	n:120000
KS ci ratio: 1.166892e-01	ci left: 8.772722e-03	ci right 9.867855e-03	k: 1117	n:120000
FBXL19   120000 perm   31 sec   (3908 perm/sec)   p_kst 9.308333e-03   p_cons 9.141750e-01   p_joint 3.366583e-01

Joint ci ratio: 1.523352e-02	ci left: 3.348910e-01	ci right 3.400393e-01	k: 43870	n:130000
Cons ci ratio: 3.327544e-03	ci left: 9.128195e-01	ci right 9.158696e-01	k: 118866	n:130000
KS ci ratio: 1.120259e-01	ci left: 8.807776e-03	ci right 9.860439e-03	k: 1212	n:130000
FBXL19   130000 perm   34 sec   (3836 perm/sec)   p_kst 9.323077e-03   p_cons 9.143538e-01   p_joint 3.374615e-01

Joint ci ratio: 1.487945e-02	ci left: 3.289699e-01	ci right 3.339085e-01	k: 46401	n:140000
Cons ci ratio: 3.205550e-03	ci left: 9.129223e-01	ci right 9.158605e-01	k: 128016	n:140000
KS ci ratio: 1.088078e-01	ci left: 8.685647e-03	ci right 9.691982e-03	k: 1285	n:140000
FBXL19   140000 perm   37 sec   (3765 perm/sec)   p_kst 9.178571e-03   p_cons 9.144000e-01   p_joint 3.314357e-01

Joint ci ratio: 1.432714e-02	ci left: 3.305284e-01	ci right 3.353047e-01	k: 49937	n:150000
Cons ci ratio: 3.098564e-03	ci left: 9.128855e-01	ci right 9.157251e-01	k: 137147	n:150000
KS ci ratio: 1.042384e-01	ci left: 8.852888e-03	ci right 9.832885e-03	k: 1400	n:150000
FBXL19   150000 perm   41 sec   (3703 perm/sec)   p_kst 9.333333e-03   p_cons 9.143133e-01   p_joint 3.329133e-01

Joint ci ratio: 1.370029e-02	ci left: 3.361562e-01	ci right 3.407996e-01	k: 54156	n:160000
Cons ci ratio: 2.999465e-03	ci left: 9.129681e-01	ci right 9.157168e-01	k: 146296	n:160000
KS ci ratio: 1.009421e-01	ci left: 8.865923e-03	ci right 9.814485e-03	k: 1493	n:160000
FBXL19   160000 perm   44 sec   (3636 perm/sec)   p_kst 9.331250e-03   p_cons 9.143500e-01   p_joint 3.384750e-01

Joint ci ratio: 1.353382e-02	ci left: 3.281876e-01	ci right 3.326653e-01	k: 56172	n:170000
Cons ci ratio: 2.914765e-03	ci left: 9.127461e-01	ci right 9.154162e-01	k: 155395	n:170000
KS ci ratio: 9.797107e-02	ci left: 8.872115e-03	ci right 9.791794e-03	k: 1585	n:170000
FBXL19   170000 perm   47 sec   (3587 perm/sec)   p_kst 9.323529e-03   p_cons 9.140882e-01   p_joint 3.304235e-01

Outputting figure to mutsig2_images.part000000000063/FBXL19.2_2129_170000_0.0093235_0.91409_0.33042.png
                gene_name: FBXL19
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.0093 
        ci_ks_bounds_left: 0.0089 
       ci_ks_bounds_right: 0.0098 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.33 

Current progress: 94 percent done.
FBXL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.198608e-02	ci left: 7.522125e-01	ci right 7.690354e-01	k: 7607	n:10000
Cons ci ratio: 3.062734e-02	ci left: 6.113069e-01	ci right 6.304227e-01	k: 6209	n:10000
KS ci ratio: 4.447696e-02	ci left: 4.273475e-01	ci right 4.468891e-01	k: 4371	n:10000
FBXL4   10000 perm   2 sec   (5445 perm/sec)   p_kst 4.371000e-01   p_cons 6.209000e-01   p_joint 7.607000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL4.2_1894_10000_0.4371_0.6209_0.7607.png
                gene_name: FBXL4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 95 percent done.
FBXL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.522581e-02	ci left: 4.191717e-01	ci right 4.386698e-01	k: 4289	n:10000
Cons ci ratio: 4.027488e-02	ci left: 4.765590e-01	ci right 4.962490e-01	k: 4864	n:10000
KS ci ratio: 5.386991e-02	ci left: 3.367719e-01	ci right 3.555178e-01	k: 3461	n:10000
FBXL5   10000 perm   2 sec   (6058 perm/sec)   p_kst 3.461000e-01   p_cons 4.864000e-01   p_joint 4.289000e-01

Outputting figure to mutsig2_images.part000000000063/FBXL5.2_2120_10000_0.3461_0.4864_0.4289.png
                gene_name: FBXL5
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 97 percent done.
FBXO16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.860597e-02	ci left: 2.999501e-01	ci right 3.181613e-01	k: 3090	n:10000
Cons ci ratio: 2.755871e-02	ci left: 6.598801e-01	ci right 6.784213e-01	k: 6692	n:10000
KS ci ratio: 1.060498e-01	ci left: 1.137899e-01	ci right 1.266323e-01	k: 1201	n:10000
FBXO16   10000 perm   2 sec   (4754 perm/sec)   p_kst 1.201000e-01   p_cons 6.692000e-01   p_joint 3.090000e-01

Joint ci ratio: 4.544463e-02	ci left: 2.649479e-01	ci right 2.773187e-01	k: 5422	n:20000
Cons ci ratio: 2.040388e-02	ci left: 6.418872e-01	ci right 6.551696e-01	k: 12971	n:20000
KS ci ratio: 7.514990e-02	ci left: 1.152317e-01	ci right 1.242791e-01	k: 2394	n:20000
FBXO16   20000 perm   4 sec   (5007 perm/sec)   p_kst 1.197000e-01   p_cons 6.485500e-01   p_joint 2.711000e-01

Outputting figure to mutsig2_images.part000000000063/FBXO16.2_911_20000_0.1197_0.64855_0.2711.png
                gene_name: FBXO16
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 98 percent done.
FBXO45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.336559e-01	ci left: 7.388330e-02	ci right 8.456334e-02	k: 791	n:10000
Cons ci ratio: 4.315524e-02	ci left: 4.422106e-01	ci right 4.618174e-01	k: 4520	n:10000
KS ci ratio: 1.425481e-01	ci left: 6.526833e-02	ci right 7.538371e-02	k: 702	n:10000
FBXO45   10000 perm   2 sec   (6520 perm/sec)   p_kst 7.020000e-02   p_cons 4.520000e-01   p_joint 7.910000e-02

Joint ci ratio: 9.345775e-02	ci left: 7.705916e-02	ci right 8.466322e-02	k: 1616	n:20000
Cons ci ratio: 3.045643e-02	ci left: 4.460834e-01	ci right 4.599303e-01	k: 9060	n:20000
KS ci ratio: 9.947345e-02	ci left: 6.845501e-02	ci right 7.567000e-02	k: 1440	n:20000
FBXO45   20000 perm   4 sec   (5663 perm/sec)   p_kst 7.200000e-02   p_cons 4.530000e-01   p_joint 8.080000e-02

Outputting figure to mutsig2_images.part000000000063/FBXO45.2_873_20000_0.072_0.453_0.0808.png
                gene_name: FBXO45
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.085 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000063
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 63 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1548>
Subject: Job 9893939: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1548>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000064> was used as the working directory.
Started at Sat Oct  6 00:08:09 2012
Results reported at Sat Oct  6 04:06:51 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000064.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000064.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 64  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000064.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  15180.78 sec.
    Max Memory :      3506 MB
    Max Swap   :      6041 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
64
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 64
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 64: processing genes 5680 - 5770
Calculating significance of each gene.
Using projection method.
5680	FBXO6	7.524239e-01
5681	FBXO7	7.731278e-01
5682	FBXO8	1
5683	FBXO9	2.525168e-01
5684	FBXW10	5.544367e-01
5685	FBXW11	9.457060e-03
5686	FBXW12	6.533244e-01
5687	FBXW2	7.129382e-01
5688	FBXW4	1.664059e-01
5689	FBXW5	1
In gene FBXW7 the following bins exceed PROBCAP:
    READ-AG-3594	categ 6	N = 2584    n = 1	mu =   1.72e-07
5690	FBXW7	0
5691	FBXW8	2.432167e-01
5692	FBXW9	1
5693	FCAMR	6.884995e-01
5694	FCAR	6.931902e-02
5695	FCER1A	1.202900e-01
5696	FCER1G	1
5697	FCER2	6.604578e-01
5698	FCF1	6.672444e-01
5699	FCGBP	8.485304e-01
5700	FCGR1A	4.714014e-01
5701	FCGR1B	1
5702	FCGR2A	6.484522e-01
5703	FCGR2B	1
5704	FCGR2C	7.390093e-01
5705	FCGR3A	6.411009e-01
5706	FCGR3B	1
5707	FCGRT	1
5708	FCHO1	8.086461e-01
5709	FCHO2	7.319904e-02
5710	FCHSD1	2.733857e-01
5711	FCHSD2	1.432529e-01
5712	FCN1	9.826769e-02
5713	FCN2	4.107274e-01
5714	FCN3	6.519504e-01
5715	FCRL1	4.745566e-01
5716	FCRL2	3.164905e-01
5717	FCRL3	9.885357e-02
In gene FCRL4 the following bins exceed PROBCAP:
    COAD-AA-3561	categ 6	N = 1596    n = 1	mu =   1.72e-07
5718	FCRL4	8.609917e-02
5719	FCRL5	2.537557e-03
5720	FCRL6	7.622183e-01
5721	FCRLA	1.204205e-01
5722	FCRLB	2.863480e-01
5723	FDFT1	3.194039e-01
5724	FDPS	1
5725	FDX1	1
5726	FDX1L	1
5727	FDXACB1	8.710459e-01
5728	FDXR	9.301727e-01
5729	FECH	7.036515e-01
5730	FEM1A	8.717951e-01
5731	FEM1B	1
5732	FEM1C	1
5733	FEN1	1.538838e-01
5734	FER	3.657660e-01
5735	FER1L5	4.463356e-01
5736	FER1L6	6.719230e-01
5737	FERD3L	1.557946e-03
5738	FERMT1	3.983886e-01
In gene FERMT2 the following bins exceed PROBCAP:
    COAD-AA-3851	categ 6	N = 2109    n = 1	mu =   3.95e-07
5739	FERMT2	4.995391e-01
5740	FERMT3	6.717519e-01
5741	FES	1
5742	FETUB	2.165426e-01
5743	FEV	1
5744	FEZ1	1.783995e-01
5745	FEZ2	4.599982e-01
5746	FEZF1	6.650142e-01
5747	FEZF2	3.729246e-01
5748	FFAR1	1
5749	FFAR2	1.633941e-01
5750	FFAR3	7.838722e-01
5751	FGA	7.823064e-04
5752	FGB	7.299829e-01
5753	FGD1	1.262513e-01
5754	FGD2	3.704319e-01
5755	FGD3	7.814011e-01
5756	FGD4	3.024171e-01
5757	FGD5	9.476878e-01
5758	FGD6	4.563769e-02
5759	FGF1	2.919248e-01
5760	FGF10	1
5761	FGF11	3.421811e-02
5762	FGF12	1.015667e-01
5763	FGF13	4.044579e-01
5764	FGF14	1.382654e-02
5765	FGF16	1
5766	FGF17	8.032861e-01
5767	FGF18	1
5768	FGF19	6.428016e-01
5769	FGF2	1
5770	FGF20	2.707841e-01
Done

Running MutSig 2:
Scatter job 64: processing genes 5680 - 5770
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FBXW7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.863014e-01	ci left: 1.576399e-02	ci right 2.112177e-02	k: 183	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
FBXW7   10000 perm   4 sec   (2849 perm/sec)   p_kst 1.000000e-04   p_cons 1.830000e-02   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.297185e-01	ci left: 1.270049e-02	ci right 1.604289e-02	k: 286	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
FBXW7   20000 perm   12 sec   (1695 perm/sec)   p_kst 5.000000e-05   p_cons 1.430000e-02   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 1.892454e-01	ci left: 1.276459e-02	ci right 1.546404e-02	k: 422	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
FBXW7   30000 perm   16 sec   (1897 perm/sec)   p_kst 3.333333e-05   p_cons 1.406667e-02   p_joint 0

Joint ci ratio: 4.896017e-01	ci left: 1.210479e-03	ci right 2.014666e-03	k: 63	n:40000
Cons ci ratio: 1.407400e-01	ci left: 1.768459e-02	ci right 2.038588e-02	k: 760	n:40000
KS ci ratio: 1.959878e+00	ci left: 1.546707e-05	ci right 2.191660e-04	k: 3	n:40000
FBXW7   40000 perm   20 sec   (2016 perm/sec)   p_kst 7.500000e-05   p_cons 1.900000e-02   p_joint 1.575000e-03

Joint ci ratio: 4.522985e-01	ci left: 1.162291e-03	ci right 1.857653e-03	k: 74	n:50000
Cons ci ratio: 1.278307e-01	ci left: 1.727878e-02	ci right 1.965759e-02	k: 922	n:50000
KS ci ratio: 1.959902e+00	ci left: 1.237361e-05	ci right 1.753353e-04	k: 3	n:50000
FBXW7   50000 perm   24 sec   (2090 perm/sec)   p_kst 6.000000e-05   p_cons 1.844000e-02   p_joint 1.480000e-03

Joint ci ratio: 4.682523e-01	ci left: 8.948754e-04	ci right 1.455176e-03	k: 69	n:60000
Cons ci ratio: 1.176490e-01	ci left: 1.709687e-02	ci right 1.925010e-02	k: 1089	n:60000
KS ci ratio: 1.959918e+00	ci left: 1.031132e-05	ci right 1.461142e-04	k: 3	n:60000
FBXW7   60000 perm   28 sec   (2121 perm/sec)   p_kst 5.000000e-05   p_cons 1.815000e-02   p_joint 1.150000e-03

Joint ci ratio: 4.822877e-01	ci left: 7.167227e-04	ci right 1.183390e-03	k: 65	n:70000
Cons ci ratio: 1.080454e-01	ci left: 1.745900e-02	ci right 1.946692e-02	k: 1291	n:70000
KS ci ratio: 1.959930e+00	ci left: 8.838260e-06	ci right 1.252416e-04	k: 3	n:70000
FBXW7   70000 perm   33 sec   (2149 perm/sec)   p_kst 4.285714e-05   p_cons 1.844286e-02   p_joint 9.285714e-04

Joint ci ratio: 4.751648e-01	ci left: 6.491081e-04	ci right 1.063475e-03	k: 67	n:80000
Cons ci ratio: 1.024027e-01	ci left: 1.706560e-02	ci right 1.891959e-02	k: 1438	n:80000
KS ci ratio: 1.753012e+00	ci left: 1.362348e-05	ci right 1.280149e-04	k: 4	n:80000
FBXW7   80000 perm   37 sec   (2157 perm/sec)   p_kst 5.000000e-05   p_cons 1.797500e-02   p_joint 8.375000e-04

Joint ci ratio: 4.787233e-01	ci left: 5.672039e-04	ci right 9.328867e-04	k: 66	n:90000
Cons ci ratio: 9.669465e-02	ci left: 1.706548e-02	ci right 1.881024e-02	k: 1613	n:90000
KS ci ratio: 1.753019e+00	ci left: 1.210974e-05	ci right 1.137915e-04	k: 4	n:90000
FBXW7   90000 perm   42 sec   (2167 perm/sec)   p_kst 4.444444e-05   p_cons 1.792222e-02   p_joint 7.333333e-04

Joint ci ratio: 4.408580e-01	ci left: 6.166049e-04	ci right 9.733811e-04	k: 78	n:100000
Cons ci ratio: 9.161135e-02	ci left: 1.715565e-02	ci right 1.881247e-02	k: 1797	n:100000
KS ci ratio: 1.753025e+00	ci left: 1.089876e-05	ci right 1.024127e-04	k: 4	n:100000
FBXW7   100000 perm   46 sec   (2158 perm/sec)   p_kst 4.000000e-05   p_cons 1.797000e-02   p_joint 7.800000e-04

Joint ci ratio: 4.381079e-01	ci left: 5.686313e-04	ci right 8.949897e-04	k: 79	n:110000
Cons ci ratio: 8.772822e-02	ci left: 1.704460e-02	ci right 1.861734e-02	k: 1960	n:110000
KS ci ratio: 1.600282e+00	ci left: 1.475913e-05	ci right 1.060725e-04	k: 5	n:110000
FBXW7   110000 perm   52 sec   (2119 perm/sec)   p_kst 4.545455e-05   p_cons 1.781818e-02   p_joint 7.181818e-04

Joint ci ratio: 4.177184e-01	ci left: 5.807348e-04	ci right 8.942091e-04	k: 87	n:120000
Cons ci ratio: 8.381950e-02	ci left: 1.714917e-02	ci right 1.865759e-02	k: 2147	n:120000
KS ci ratio: 1.600287e+00	ci left: 1.352919e-05	ci right 9.723340e-05	k: 5	n:120000
FBXW7   120000 perm   57 sec   (2097 perm/sec)   p_kst 4.166667e-05   p_cons 1.789167e-02   p_joint 7.250000e-04

Joint ci ratio: 4.327534e-01	ci left: 4.948429e-04	ci right 7.743691e-04	k: 81	n:130000
Cons ci ratio: 8.040813e-02	ci left: 1.723142e-02	ci right 1.868250e-02	k: 2333	n:130000
KS ci ratio: 1.600290e+00	ci left: 1.248847e-05	ci right 8.975410e-05	k: 5	n:130000
FBXW7   130000 perm   62 sec   (2096 perm/sec)   p_kst 3.846154e-05   p_cons 1.794615e-02   p_joint 6.230769e-04

Joint ci ratio: 4.354280e-01	ci left: 4.531325e-04	ci right 7.111426e-04	k: 80	n:140000
Cons ci ratio: 7.769658e-02	ci left: 1.716285e-02	ci right 1.855722e-02	k: 2499	n:140000
KS ci ratio: 1.481578e+00	ci left: 1.572797e-05	ci right 9.327961e-05	k: 6	n:140000
FBXW7   140000 perm   67 sec   (2092 perm/sec)   p_kst 4.285714e-05   p_cons 1.785000e-02   p_joint 5.714286e-04

Joint ci ratio: 4.201448e-01	ci left: 4.586174e-04	ci right 7.080143e-04	k: 86	n:150000
Cons ci ratio: 7.504167e-02	ci left: 1.719576e-02	ci right 1.854297e-02	k: 2679	n:150000
KS ci ratio: 1.481581e+00	ci left: 1.467943e-05	ci right 8.706111e-05	k: 6	n:150000
FBXW7   150000 perm   72 sec   (2088 perm/sec)   p_kst 4.000000e-05   p_cons 1.786000e-02   p_joint 5.733333e-04

Joint ci ratio: 4.381584e-01	ci left: 3.909254e-04	ci right 6.153224e-04	k: 79	n:160000
Cons ci ratio: 7.275820e-02	ci left: 1.717001e-02	ci right 1.847254e-02	k: 2850	n:160000
KS ci ratio: 1.385890e+00	ci left: 1.758994e-05	ci right 9.013963e-05	k: 7	n:160000
FBXW7   160000 perm   77 sec   (2080 perm/sec)   p_kst 4.375000e-05   p_cons 1.781250e-02   p_joint 4.937500e-04

Joint ci ratio: 4.788084e-01	ci left: 3.002735e-04	ci right 4.939044e-04	k: 66	n:170000
Cons ci ratio: 8.025042e-02	ci left: 1.328540e-02	ci right 1.440186e-02	k: 2352	n:170000
KS ci ratio: 1.385893e+00	ci left: 1.655523e-05	ci right 8.483741e-05	k: 7	n:170000
FBXW7   170000 perm   82 sec   (2072 perm/sec)   p_kst 4.117647e-05   p_cons 1.383529e-02   p_joint 3.882353e-04

Joint ci ratio: 4.587070e-01	ci left: 3.129881e-04	ci right 5.037077e-04	k: 72	n:180000
Cons ci ratio: 7.801181e-02	ci left: 1.329337e-02	ci right 1.437792e-02	k: 2489	n:180000
KS ci ratio: 1.385895e+00	ci left: 1.563549e-05	ci right 8.012432e-05	k: 7	n:180000
FBXW7   180000 perm   87 sec   (2061 perm/sec)   p_kst 3.888889e-05   p_cons 1.382778e-02   p_joint 4.000000e-04

Joint ci ratio: 4.495637e-01	ci left: 3.104978e-04	ci right 4.947813e-04	k: 75	n:190000
Cons ci ratio: 7.609768e-02	ci left: 1.324925e-02	ci right 1.430250e-02	k: 2616	n:190000
KS ci ratio: 1.385896e+00	ci left: 1.481256e-05	ci right 7.590733e-05	k: 7	n:190000
FBXW7   190000 perm   93 sec   (2034 perm/sec)   p_kst 3.684211e-05   p_cons 1.376842e-02   p_joint 3.947368e-04

Joint ci ratio: 4.409462e-01	ci left: 3.082906e-04	ci right 4.867141e-04	k: 78	n:200000
Cons ci ratio: 7.400401e-02	ci left: 1.332273e-02	ci right 1.435143e-02	k: 2766	n:200000
KS ci ratio: 1.385898e+00	ci left: 1.407193e-05	ci right 7.211204e-05	k: 7	n:200000
FBXW7   200000 perm   99 sec   (2023 perm/sec)   p_kst 3.500000e-05   p_cons 1.383000e-02   p_joint 3.900000e-04

Joint ci ratio: 4.899242e-01	ci left: 2.305357e-04	ci right 3.838142e-04	k: 63	n:210000
Cons ci ratio: 7.236399e-02	ci left: 1.328200e-02	ci right 1.428387e-02	k: 2893	n:210000
KS ci ratio: 1.306636e+00	ci left: 1.644696e-05	ci right 7.506142e-05	k: 8	n:210000
FBXW7   210000 perm   104 sec   (2010 perm/sec)   p_kst 3.809524e-05   p_cons 1.377619e-02   p_joint 3.000000e-04

Joint ci ratio: 5.102709e-01	ci left: 2.001960e-04	ci right 3.407980e-04	k: 58	n:220000
Cons ci ratio: 7.082837e-02	ci left: 1.324520e-02	ci right 1.422222e-02	k: 3020	n:220000
KS ci ratio: 1.306637e+00	ci left: 1.569936e-05	ci right 7.164960e-05	k: 8	n:220000
FBXW7   220000 perm   110 sec   (1998 perm/sec)   p_kst 3.636364e-05   p_cons 1.372727e-02   p_joint 2.636364e-04

Joint ci ratio: 4.938049e-01	ci left: 2.066802e-04	ci right 3.455573e-04	k: 62	n:230000
Cons ci ratio: 6.955473e-02	ci left: 1.314771e-02	ci right 1.409939e-02	k: 3132	n:230000
KS ci ratio: 1.239583e+00	ci left: 1.789308e-05	ci right 7.428045e-05	k: 9	n:230000
FBXW7   230000 perm   116 sec   (1986 perm/sec)   p_kst 3.913043e-05   p_cons 1.361739e-02   p_joint 2.695652e-04

Joint ci ratio: 4.824513e-01	ci left: 2.090295e-04	ci right 3.451865e-04	k: 65	n:240000
Cons ci ratio: 6.813484e-02	ci left: 1.314042e-02	ci right 1.407138e-02	k: 3264	n:240000
KS ci ratio: 1.181895e+00	ci left: 1.998096e-05	ci right 7.662514e-05	k: 10	n:240000
FBXW7   240000 perm   122 sec   (1972 perm/sec)   p_kst 4.166667e-05   p_cons 1.360000e-02   p_joint 2.708333e-04

Joint ci ratio: 4.861520e-01	ci left: 1.971566e-04	ci right 3.268947e-04	k: 64	n:250000
Cons ci ratio: 6.679849e-02	ci left: 1.313389e-02	ci right 1.404544e-02	k: 3396	n:250000
KS ci ratio: 1.181896e+00	ci left: 1.918172e-05	ci right 7.356019e-05	k: 10	n:250000
FBXW7   250000 perm   128 sec   (1950 perm/sec)   p_kst 4.000000e-05   p_cons 1.358400e-02   p_joint 2.560000e-04

Joint ci ratio: 4.788416e-01	ci left: 1.963299e-04	ci right 3.229434e-04	k: 66	n:260000
Cons ci ratio: 6.556606e-02	ci left: 1.311668e-02	ci right 1.400960e-02	k: 3525	n:260000
KS ci ratio: 1.181897e+00	ci left: 1.844395e-05	ci right 7.073100e-05	k: 10	n:260000
FBXW7   260000 perm   134 sec   (1934 perm/sec)   p_kst 3.846154e-05   p_cons 1.355769e-02   p_joint 2.538462e-04

Joint ci ratio: 4.651564e-01	ci left: 2.021107e-04	ci right 3.275473e-04	k: 70	n:270000
Cons ci ratio: 6.420383e-02	ci left: 1.318107e-02	ci right 1.405904e-02	k: 3676	n:270000
KS ci ratio: 1.181898e+00	ci left: 1.776084e-05	ci right 6.811137e-05	k: 10	n:270000
FBXW7   270000 perm   141 sec   (1919 perm/sec)   p_kst 3.703704e-05   p_cons 1.361481e-02   p_joint 2.592593e-04

Joint ci ratio: 4.556297e-01	ci left: 2.043638e-04	ci right 3.277981e-04	k: 73	n:280000
Cons ci ratio: 6.310722e-02	ci left: 1.316370e-02	ci right 1.402498e-02	k: 3805	n:280000
KS ci ratio: 1.181899e+00	ci left: 1.712652e-05	ci right 6.567886e-05	k: 10	n:280000
FBXW7   280000 perm   147 sec   (1906 perm/sec)   p_kst 3.571429e-05   p_cons 1.358929e-02   p_joint 2.607143e-04

Joint ci ratio: 4.382081e-01	ci left: 2.156783e-04	ci right 3.394975e-04	k: 79	n:290000
Cons ci ratio: 6.196126e-02	ci left: 1.319178e-02	ci right 1.403867e-02	k: 3947	n:290000
KS ci ratio: 1.131581e+00	ci left: 1.893518e-05	ci right 6.786808e-05	k: 11	n:290000
FBXW7   290000 perm   153 sec   (1893 perm/sec)   p_kst 3.793103e-05   p_cons 1.361034e-02   p_joint 2.724138e-04

Joint ci ratio: 4.276465e-01	ci left: 2.203693e-04	ci right 3.429586e-04	k: 83	n:300000
Cons ci ratio: 6.071771e-02	ci left: 1.328708e-02	ci right 1.412236e-02	k: 4110	n:300000
KS ci ratio: 1.047638e+00	ci left: 2.307337e-05	ci right 7.410018e-05	k: 13	n:300000
FBXW7   300000 perm   160 sec   (1880 perm/sec)   p_kst 4.333333e-05   p_cons 1.370000e-02   p_joint 2.766667e-04

Joint ci ratio: 4.437960e-01	ci left: 1.960280e-04	ci right 3.104316e-04	k: 77	n:310000
Cons ci ratio: 5.978771e-02	ci left: 1.326832e-02	ci right 1.408920e-02	k: 4239	n:310000
KS ci ratio: 1.047639e+00	ci left: 2.232906e-05	ci right 7.170989e-05	k: 13	n:310000
FBXW7   310000 perm   166 sec   (1867 perm/sec)   p_kst 4.193548e-05   p_cons 1.367419e-02   p_joint 2.483871e-04

Joint ci ratio: 4.437978e-01	ci left: 1.899020e-04	ci right 3.007309e-04	k: 77	n:320000
Cons ci ratio: 5.887186e-02	ci left: 1.326314e-02	ci right 1.407070e-02	k: 4372	n:320000
KS ci ratio: 1.047640e+00	ci left: 2.163127e-05	ci right 6.946899e-05	k: 13	n:320000
FBXW7   320000 perm   172 sec   (1855 perm/sec)   p_kst 4.062500e-05   p_cons 1.366250e-02   p_joint 2.406250e-04

Joint ci ratio: 4.496024e-01	ci left: 1.787685e-04	ci right 2.848801e-04	k: 75	n:330000
Cons ci ratio: 5.807529e-02	ci left: 1.322252e-02	ci right 1.401636e-02	k: 4493	n:330000
KS ci ratio: 1.012115e+00	ci left: 2.319392e-05	ci right 7.117965e-05	k: 14	n:330000
FBXW7   330000 perm   179 sec   (1843 perm/sec)   p_kst 4.242424e-05   p_cons 1.361515e-02   p_joint 2.272727e-04

Joint ci ratio: 4.355030e-01	ci left: 1.865779e-04	ci right 2.928355e-04	k: 80	n:340000
Cons ci ratio: 5.637633e-02	ci left: 1.362516e-02	ci right 1.441845e-02	k: 4766	n:340000
KS ci ratio: 1.012116e+00	ci left: 2.251174e-05	ci right 6.908616e-05	k: 14	n:340000
FBXW7   340000 perm   186 sec   (1831 perm/sec)   p_kst 4.117647e-05   p_cons 1.401765e-02   p_joint 2.352941e-04

Joint ci ratio: 4.466757e-01	ci left: 1.710876e-04	ci right 2.717792e-04	k: 76	n:350000
Cons ci ratio: 5.555482e-02	ci left: 1.363590e-02	ci right 1.441789e-02	k: 4908	n:350000
KS ci ratio: 1.012117e+00	ci left: 2.186854e-05	ci right 6.711229e-05	k: 14	n:350000
FBXW7   350000 perm   193 sec   (1809 perm/sec)   p_kst 4.000000e-05   p_cons 1.402286e-02   p_joint 2.171429e-04

Joint ci ratio: 4.466771e-01	ci left: 1.663350e-04	ci right 2.642300e-04	k: 76	n:360000
Cons ci ratio: 5.469686e-02	ci left: 1.368176e-02	ci right 1.445387e-02	k: 5063	n:360000
KS ci ratio: 1.012117e+00	ci left: 2.126108e-05	ci right 6.524809e-05	k: 14	n:360000
FBXW7   360000 perm   200 sec   (1796 perm/sec)   p_kst 3.888889e-05   p_cons 1.406389e-02   p_joint 2.111111e-04

Joint ci ratio: 4.861728e-01	ci left: 1.332127e-04	ci right 2.208773e-04	k: 64	n:370000
Cons ci ratio: 5.400881e-02	ci left: 1.365855e-02	ci right 1.441936e-02	k: 5193	n:370000
KS ci ratio: 1.012118e+00	ci left: 2.068645e-05	ci right 6.348465e-05	k: 14	n:370000
FBXW7   370000 perm   207 sec   (1784 perm/sec)   p_kst 3.783784e-05   p_cons 1.403514e-02   p_joint 1.729730e-04

Joint ci ratio: 4.753267e-01	ci left: 1.366448e-04	ci right 2.239095e-04	k: 67	n:380000
Cons ci ratio: 5.338679e-02	ci left: 1.361585e-02	ci right 1.436527e-02	k: 5315	n:380000
KS ci ratio: 1.012118e+00	ci left: 2.014206e-05	ci right 6.181402e-05	k: 14	n:380000
FBXW7   380000 perm   215 sec   (1770 perm/sec)   p_kst 3.684211e-05   p_cons 1.398684e-02   p_joint 1.763158e-04

Joint ci ratio: 4.684870e-01	ci left: 1.376592e-04	ci right 2.239022e-04	k: 69	n:390000
Cons ci ratio: 5.258509e-02	ci left: 1.367915e-02	ci right 1.442041e-02	k: 5478	n:390000
KS ci ratio: 9.799786e-01	ci left: 2.152679e-05	ci right 6.343567e-05	k: 15	n:390000
FBXW7   390000 perm   222 sec   (1758 perm/sec)   p_kst 3.846154e-05   p_cons 1.404615e-02   p_joint 1.769231e-04

Joint ci ratio: 4.938341e-01	ci left: 1.188396e-04	ci right 1.986987e-04	k: 62	n:400000
Cons ci ratio: 5.195873e-02	ci left: 1.366532e-02	ci right 1.439674e-02	k: 5611	n:400000
KS ci ratio: 9.799792e-01	ci left: 2.098861e-05	ci right 6.184979e-05	k: 15	n:400000
FBXW7   400000 perm   229 sec   (1746 perm/sec)   p_kst 3.750000e-05   p_cons 1.402750e-02   p_joint 1.550000e-04

Joint ci ratio: 4.938350e-01	ci left: 1.159410e-04	ci right 1.938525e-04	k: 62	n:410000
Cons ci ratio: 5.129089e-02	ci left: 1.368593e-02	ci right 1.440876e-02	k: 5758	n:410000
KS ci ratio: 9.799797e-01	ci left: 2.047669e-05	ci right 6.034128e-05	k: 15	n:410000
FBXW7   410000 perm   237 sec   (1733 perm/sec)   p_kst 3.658537e-05   p_cons 1.404390e-02   p_joint 1.512195e-04

Joint ci ratio: 4.861780e-01	ci left: 1.173538e-04	ci right 1.945830e-04	k: 64	n:420000
Cons ci ratio: 5.064381e-02	ci left: 1.370797e-02	ci right 1.442257e-02	k: 5906	n:420000
KS ci ratio: 9.239320e-01	ci left: 2.357904e-05	ci right 6.480551e-05	k: 17	n:420000
FBXW7   420000 perm   244 sec   (1719 perm/sec)   p_kst 4.047619e-05   p_cons 1.406190e-02   p_joint 1.523810e-04

Joint ci ratio: 4.788664e-01	ci left: 1.187098e-04	ci right 1.952708e-04	k: 66	n:430000
Cons ci ratio: 4.999550e-02	ci left: 1.374282e-02	ci right 1.444980e-02	k: 6060	n:430000
KS ci ratio: 8.992888e-01	ci left: 2.480935e-05	ci right 6.615678e-05	k: 18	n:430000
FBXW7   430000 perm   252 sec   (1706 perm/sec)   p_kst 4.186047e-05   p_cons 1.409302e-02   p_joint 1.534884e-04

Joint ci ratio: 4.899638e-01	ci left: 1.100265e-04	ci right 1.831881e-04	k: 63	n:440000
Cons ci ratio: 4.931916e-02	ci left: 1.380533e-02	ci right 1.450564e-02	k: 6227	n:440000
KS ci ratio: 8.992892e-01	ci left: 2.424549e-05	ci right 6.465323e-05	k: 18	n:440000
FBXW7   440000 perm   260 sec   (1692 perm/sec)   p_kst 4.090909e-05   p_cons 1.415227e-02   p_joint 1.431818e-04

Joint ci ratio: 4.899646e-01	ci left: 1.075815e-04	ci right 1.791173e-04	k: 63	n:450000
Cons ci ratio: 4.873530e-02	ci left: 1.382779e-02	ci right 1.452071e-02	k: 6377	n:450000
KS ci ratio: 8.992897e-01	ci left: 2.370670e-05	ci right 6.321651e-05	k: 18	n:450000
FBXW7   450000 perm   268 sec   (1678 perm/sec)   p_kst 4.000000e-05   p_cons 1.417111e-02   p_joint 1.400000e-04

Joint ci ratio: 4.938392e-01	ci left: 1.033386e-04	ci right 1.727819e-04	k: 62	n:460000
Cons ci ratio: 4.821291e-02	ci left: 1.382570e-02	ci right 1.451088e-02	k: 6516	n:460000
KS ci ratio: 8.765186e-01	ci left: 2.486809e-05	ci right 6.450111e-05	k: 19	n:460000
FBXW7   460000 perm   277 sec   (1663 perm/sec)   p_kst 4.130435e-05   p_cons 1.416522e-02   p_joint 1.347826e-04

Joint ci ratio: 4.899661e-01	ci left: 1.030035e-04	ci right 1.714954e-04	k: 63	n:470000
Cons ci ratio: 4.771788e-02	ci left: 1.381743e-02	ci right 1.449497e-02	k: 6652	n:470000
KS ci ratio: 8.765191e-01	ci left: 2.433898e-05	ci right 6.312876e-05	k: 19	n:470000
FBXW7   470000 perm   285 sec   (1649 perm/sec)   p_kst 4.042553e-05   p_cons 1.415319e-02   p_joint 1.340426e-04

Joint ci ratio: 4.938407e-01	ci left: 9.903273e-05	ci right 1.655828e-04	k: 62	n:480000
Cons ci ratio: 4.726958e-02	ci left: 1.379100e-02	ci right 1.446072e-02	k: 6779	n:480000
KS ci ratio: 8.765195e-01	ci left: 2.383192e-05	ci right 6.181359e-05	k: 19	n:480000
FBXW7   480000 perm   293 sec   (1636 perm/sec)   p_kst 3.958333e-05   p_cons 1.412292e-02   p_joint 1.291667e-04

Joint ci ratio: 4.861834e-01	ci left: 1.005888e-04	ci right 1.667859e-04	k: 64	n:490000
Cons ci ratio: 4.678561e-02	ci left: 1.379392e-02	ci right 1.445674e-02	k: 6920	n:490000
KS ci ratio: 8.765199e-01	ci left: 2.334555e-05	ci right 6.055210e-05	k: 19	n:490000
FBXW7   490000 perm   302 sec   (1621 perm/sec)   p_kst 3.877551e-05   p_cons 1.412245e-02   p_joint 1.306122e-04

Joint ci ratio: 4.824863e-01	ci left: 1.003326e-04	ci right 1.656927e-04	k: 65	n:500000
Cons ci ratio: 4.627966e-02	ci left: 1.381851e-02	ci right 1.447514e-02	k: 7072	n:500000
KS ci ratio: 8.765202e-01	ci left: 2.287863e-05	ci right 5.934107e-05	k: 19	n:500000
FBXW7   500000 perm   311 sec   (1607 perm/sec)   p_kst 3.800000e-05   p_cons 1.414400e-02   p_joint 1.300000e-04

Joint ci ratio: 4.788723e-01	ci left: 1.000884e-04	ci right 1.646406e-04	k: 66	n:510000
Cons ci ratio: 4.585742e-02	ci left: 1.380146e-02	ci right 1.445114e-02	k: 7203	n:510000
KS ci ratio: 8.553957e-01	ci left: 2.395412e-05	ci right 6.056480e-05	k: 20	n:510000
FBXW7   510000 perm   320 sec   (1596 perm/sec)   p_kst 3.921569e-05   p_cons 1.412353e-02   p_joint 1.294118e-04

Joint ci ratio: 4.718808e-01	ci left: 1.015488e-04	ci right 1.657783e-04	k: 68	n:520000
Cons ci ratio: 4.534943e-02	ci left: 1.384404e-02	ci right 1.448831e-02	k: 7365	n:520000
KS ci ratio: 8.357283e-01	ci left: 2.499888e-05	ci right 6.173152e-05	k: 21	n:520000
FBXW7   520000 perm   328 sec   (1585 perm/sec)   p_kst 4.038462e-05   p_cons 1.416346e-02   p_joint 1.307692e-04

Joint ci ratio: 4.684982e-01	ci left: 1.012959e-04	ci right 1.647593e-04	k: 69	n:530000
Cons ci ratio: 4.491852e-02	ci left: 1.384773e-02	ci right 1.448590e-02	k: 7507	n:530000
KS ci ratio: 8.357287e-01	ci left: 2.452720e-05	ci right 6.056678e-05	k: 21	n:530000
FBXW7   530000 perm   337 sec   (1574 perm/sec)   p_kst 3.962264e-05   p_cons 1.416415e-02   p_joint 1.301887e-04

Joint ci ratio: 4.684988e-01	ci left: 9.942006e-05	ci right 1.617082e-04	k: 69	n:540000
Cons ci ratio: 4.447019e-02	ci left: 1.386963e-02	ci right 1.450226e-02	k: 7659	n:540000
KS ci ratio: 8.357290e-01	ci left: 2.407299e-05	ci right 5.944519e-05	k: 21	n:540000
FBXW7   540000 perm   346 sec   (1560 perm/sec)   p_kst 3.888889e-05   p_cons 1.418333e-02   p_joint 1.277778e-04

Joint ci ratio: 4.684994e-01	ci left: 9.761239e-05	ci right 1.587681e-04	k: 69	n:550000
Cons ci ratio: 4.408944e-02	ci left: 1.385660e-02	ci right 1.448308e-02	k: 7792	n:550000
KS ci ratio: 8.357293e-01	ci left: 2.363530e-05	ci right 5.836438e-05	k: 21	n:550000
FBXW7   550000 perm   355 sec   (1549 perm/sec)   p_kst 3.818182e-05   p_cons 1.416727e-02   p_joint 1.254545e-04

Joint ci ratio: 4.651885e-01	ci left: 9.744489e-05	ci right 1.579274e-04	k: 70	n:560000
Cons ci ratio: 4.371830e-02	ci left: 1.384405e-02	ci right 1.446457e-02	k: 7925	n:560000
KS ci ratio: 8.173590e-01	ci left: 2.462031e-05	ci right 5.947844e-05	k: 22	n:560000
FBXW7   560000 perm   364 sec   (1539 perm/sec)   p_kst 3.928571e-05   p_cons 1.415179e-02   p_joint 1.250000e-04

Joint ci ratio: 4.619468e-01	ci left: 9.728473e-05	ci right 1.571147e-04	k: 71	n:570000
Cons ci ratio: 4.333185e-02	ci left: 1.384758e-02	ci right 1.446263e-02	k: 8067	n:570000
KS ci ratio: 8.173593e-01	ci left: 2.418837e-05	ci right 5.843497e-05	k: 22	n:570000
FBXW7   570000 perm   373 sec   (1529 perm/sec)   p_kst 3.859649e-05   p_cons 1.415263e-02   p_joint 1.245614e-04

Joint ci ratio: 4.978135e-01	ci left: 8.044949e-05	ci right 1.350963e-04	k: 61	n:580000
Cons ci ratio: 4.299798e-02	ci left: 1.382372e-02	ci right 1.443287e-02	k: 8193	n:580000
KS ci ratio: 8.173596e-01	ci left: 2.377133e-05	ci right 5.742748e-05	k: 22	n:580000
FBXW7   580000 perm   382 sec   (1520 perm/sec)   p_kst 3.793103e-05   p_cons 1.412586e-02   p_joint 1.051724e-04

Joint ci ratio: 4.899730e-01	ci left: 8.205337e-05	ci right 1.366155e-04	k: 63	n:590000
Cons ci ratio: 4.264573e-02	ci left: 1.381746e-02	ci right 1.442122e-02	k: 8329	n:590000
KS ci ratio: 8.001497e-01	ci left: 2.471207e-05	ci right 5.849315e-05	k: 23	n:590000
FBXW7   590000 perm   391 sec   (1509 perm/sec)   p_kst 3.898305e-05   p_cons 1.411695e-02   p_joint 1.067797e-04

Joint ci ratio: 4.861894e-01	ci left: 8.214727e-05	ci right 1.362089e-04	k: 64	n:600000
Cons ci ratio: 4.225898e-02	ci left: 1.383947e-02	ci right 1.443857e-02	k: 8482	n:600000
KS ci ratio: 8.001500e-01	ci left: 2.430020e-05	ci right 5.751827e-05	k: 23	n:600000
FBXW7   600000 perm   400 sec   (1500 perm/sec)   p_kst 3.833333e-05   p_cons 1.413667e-02   p_joint 1.066667e-04

Joint ci ratio: 4.861899e-01	ci left: 8.080058e-05	ci right 1.339760e-04	k: 64	n:610000
Cons ci ratio: 4.187518e-02	ci left: 1.386564e-02	ci right 1.446030e-02	k: 8638	n:610000
KS ci ratio: 8.001503e-01	ci left: 2.390183e-05	ci right 5.657536e-05	k: 23	n:610000
FBXW7   610000 perm   409 sec   (1491 perm/sec)   p_kst 3.770492e-05   p_cons 1.416066e-02   p_joint 1.049180e-04

Joint ci ratio: 4.824926e-01	ci left: 8.091321e-05	ci right 1.336236e-04	k: 65	n:620000
Cons ci ratio: 4.150644e-02	ci left: 1.388780e-02	ci right 1.447804e-02	k: 8792	n:620000
KS ci ratio: 8.001505e-01	ci left: 2.351631e-05	ci right 5.566286e-05	k: 23	n:620000
FBXW7   620000 perm   418 sec   (1482 perm/sec)   p_kst 3.709677e-05   p_cons 1.418065e-02   p_joint 1.048387e-04

Joint ci ratio: 4.824930e-01	ci left: 7.962885e-05	ci right 1.315026e-04	k: 65	n:630000
Cons ci ratio: 4.116828e-02	ci left: 1.389514e-02	ci right 1.448076e-02	k: 8937	n:630000
KS ci ratio: 8.001508e-01	ci left: 2.314304e-05	ci right 5.477933e-05	k: 23	n:630000
FBXW7   630000 perm   428 sec   (1473 perm/sec)   p_kst 3.650794e-05   p_cons 1.418571e-02   p_joint 1.031746e-04

Joint ci ratio: 4.788788e-01	ci left: 7.975774e-05	ci right 1.311984e-04	k: 66	n:640000
Cons ci ratio: 4.087708e-02	ci left: 1.387598e-02	ci right 1.445656e-02	k: 9065	n:640000
KS ci ratio: 8.001510e-01	ci left: 2.278142e-05	ci right 5.392341e-05	k: 23	n:640000
FBXW7   640000 perm   437 sec   (1464 perm/sec)   p_kst 3.593750e-05   p_cons 1.416406e-02   p_joint 1.031250e-04

Joint ci ratio: 5.018806e-01	ci left: 7.044121e-05	ci right 1.188167e-04	k: 60	n:650000
Cons ci ratio: 4.055842e-02	ci left: 1.388026e-02	ci right 1.445639e-02	k: 9208	n:650000
KS ci ratio: 7.839843e-01	ci left: 2.365745e-05	ci right 5.493812e-05	k: 24	n:650000
FBXW7   650000 perm   447 sec   (1456 perm/sec)   p_kst 3.692308e-05   p_cons 1.416615e-02   p_joint 9.230769e-05

Joint ci ratio: 5.334222e-01	ci left: 6.015304e-05	ci right 1.050370e-04	k: 53	n:660000
Cons ci ratio: 4.024928e-02	ci left: 1.388293e-02	ci right 1.445468e-02	k: 9350	n:660000
KS ci ratio: 7.839846e-01	ci left: 2.329900e-05	ci right 5.410573e-05	k: 24	n:660000
FBXW7   660000 perm   456 sec   (1447 perm/sec)   p_kst 3.636364e-05   p_cons 1.416667e-02   p_joint 8.030303e-05

Joint ci ratio: 5.334225e-01	ci left: 5.925523e-05	ci right 1.034693e-04	k: 53	n:670000
Cons ci ratio: 3.995351e-02	ci left: 1.388111e-02	ci right 1.444848e-02	k: 9489	n:670000
KS ci ratio: 7.839848e-01	ci left: 2.295125e-05	ci right 5.329819e-05	k: 24	n:670000
FBXW7   670000 perm   466 sec   (1438 perm/sec)   p_kst 3.582090e-05   p_cons 1.416269e-02   p_joint 7.910448e-05

Joint ci ratio: 5.285509e-01	ci left: 5.965711e-05	ci right 1.036139e-04	k: 54	n:680000
Cons ci ratio: 3.969554e-02	ci left: 1.385751e-02	ci right 1.442017e-02	k: 9613	n:680000
KS ci ratio: 7.839850e-01	ci left: 2.261373e-05	ci right 5.251440e-05	k: 24	n:680000
FBXW7   680000 perm   476 sec   (1429 perm/sec)   p_kst 3.529412e-05   p_cons 1.413676e-02   p_joint 7.941176e-05

Joint ci ratio: 5.146992e-01	ci left: 6.256760e-05	ci right 1.070278e-04	k: 57	n:690000
Cons ci ratio: 3.940967e-02	ci left: 1.385757e-02	ci right 1.441609e-02	k: 9753	n:690000
KS ci ratio: 7.543890e-01	ci left: 2.461473e-05	ci right 5.521115e-05	k: 26	n:690000
FBXW7   690000 perm   486 sec   (1420 perm/sec)   p_kst 3.768116e-05   p_cons 1.413478e-02   p_joint 8.260870e-05

Joint ci ratio: 5.146995e-01	ci left: 6.167377e-05	ci right 1.054989e-04	k: 57	n:700000
Cons ci ratio: 3.913190e-02	ci left: 1.385622e-02	ci right 1.441067e-02	k: 9892	n:700000
KS ci ratio: 7.543893e-01	ci left: 2.426309e-05	ci right 5.442242e-05	k: 26	n:700000
FBXW7   700000 perm   496 sec   (1412 perm/sec)   p_kst 3.714286e-05   p_cons 1.413143e-02   p_joint 8.142857e-05

Joint ci ratio: 5.103190e-01	ci left: 6.203131e-05	ci right 1.056022e-04	k: 58	n:710000
Cons ci ratio: 3.883245e-02	ci left: 1.387446e-02	ci right 1.442529e-02	k: 10045	n:710000
KS ci ratio: 7.543895e-01	ci left: 2.392135e-05	ci right 5.365591e-05	k: 26	n:710000
FBXW7   710000 perm   506 sec   (1404 perm/sec)   p_kst 3.661972e-05   p_cons 1.414789e-02   p_joint 8.169014e-05

Joint ci ratio: 5.060484e-01	ci left: 6.238047e-05	ci right 1.057011e-04	k: 59	n:720000
Cons ci ratio: 3.853210e-02	ci left: 1.389771e-02	ci right 1.444510e-02	k: 10202	n:720000
KS ci ratio: 7.543897e-01	ci left: 2.358911e-05	ci right 5.291070e-05	k: 26	n:720000
FBXW7   720000 perm   516 sec   (1396 perm/sec)   p_kst 3.611111e-05   p_cons 1.416944e-02   p_joint 8.194444e-05

Joint ci ratio: 5.191961e-01	ci left: 5.794817e-05	ci right 9.961620e-05	k: 56	n:730000
Cons ci ratio: 3.824048e-02	ci left: 1.391898e-02	ci right 1.446297e-02	k: 10358	n:730000
KS ci ratio: 7.543899e-01	ci left: 2.326597e-05	ci right 5.218590e-05	k: 26	n:730000
FBXW7   730000 perm   526 sec   (1389 perm/sec)   p_kst 3.561644e-05   p_cons 1.418904e-02   p_joint 7.671233e-05

Joint ci ratio: 5.435867e-01	ci left: 5.131508e-05	ci right 9.061467e-05	k: 51	n:740000
Cons ci ratio: 3.799022e-02	ci left: 1.391425e-02	ci right 1.445442e-02	k: 10495	n:740000
KS ci ratio: 7.543901e-01	ci left: 2.295156e-05	ci right 5.148069e-05	k: 26	n:740000
FBXW7   740000 perm   536 sec   (1381 perm/sec)   p_kst 3.513514e-05   p_cons 1.418243e-02   p_joint 6.891892e-05

Joint ci ratio: 5.488908e-01	ci left: 4.948168e-05	ci right 8.789076e-05	k: 50	n:750000
Cons ci ratio: 3.773402e-02	ci left: 1.391759e-02	ci right 1.445417e-02	k: 10638	n:750000
KS ci ratio: 7.407960e-01	ci left: 2.372436e-05	ci right 5.237768e-05	k: 27	n:750000
FBXW7   750000 perm   546 sec   (1373 perm/sec)   p_kst 3.600000e-05   p_cons 1.418400e-02   p_joint 6.666667e-05

Joint ci ratio: 5.488910e-01	ci left: 4.883060e-05	ci right 8.673431e-05	k: 50	n:760000
Cons ci ratio: 3.746002e-02	ci left: 1.393780e-02	ci right 1.447117e-02	k: 10794	n:760000
KS ci ratio: 7.407962e-01	ci left: 2.341219e-05	ci right 5.168851e-05	k: 27	n:760000
FBXW7   760000 perm   557 sec   (1365 perm/sec)   p_kst 3.552632e-05   p_cons 1.420263e-02   p_joint 6.578947e-05

Joint ci ratio: 5.488913e-01	ci left: 4.819643e-05	ci right 8.560790e-05	k: 50	n:770000
Cons ci ratio: 3.721605e-02	ci left: 1.393949e-02	ci right 1.446937e-02	k: 10936	n:770000
KS ci ratio: 7.279115e-01	ci left: 2.416350e-05	ci right 5.255515e-05	k: 28	n:770000
FBXW7   770000 perm   567 sec   (1357 perm/sec)   p_kst 3.636364e-05   p_cons 1.420260e-02   p_joint 6.493506e-05

Joint ci ratio: 5.435877e-01	ci left: 4.868352e-05	ci right 8.596781e-05	k: 51	n:780000
Cons ci ratio: 3.696663e-02	ci left: 1.394876e-02	ci right 1.447537e-02	k: 11084	n:780000
KS ci ratio: 7.156766e-01	ci left: 2.489982e-05	ci right 5.339551e-05	k: 29	n:780000
FBXW7   780000 perm   578 sec   (1350 perm/sec)   p_kst 3.717949e-05   p_cons 1.421026e-02   p_joint 6.538462e-05

Joint ci ratio: 5.435880e-01	ci left: 4.806726e-05	ci right 8.487962e-05	k: 51	n:790000
Cons ci ratio: 3.670890e-02	ci left: 1.396785e-02	ci right 1.449142e-02	k: 11240	n:790000
KS ci ratio: 7.156768e-01	ci left: 2.458463e-05	ci right 5.271963e-05	k: 29	n:790000
FBXW7   790000 perm   589 sec   (1342 perm/sec)   p_kst 3.670886e-05   p_cons 1.422785e-02   p_joint 6.455696e-05

Joint ci ratio: 5.384352e-01	ci left: 4.854548e-05	ci right 8.523799e-05	k: 52	n:800000
Cons ci ratio: 3.646460e-02	ci left: 1.398027e-02	ci right 1.450075e-02	k: 11391	n:800000
KS ci ratio: 7.156769e-01	ci left: 2.427732e-05	ci right 5.206064e-05	k: 29	n:800000
FBXW7   800000 perm   600 sec   (1334 perm/sec)   p_kst 3.625000e-05   p_cons 1.423875e-02   p_joint 6.500000e-05

Joint ci ratio: 5.384355e-01	ci left: 4.794615e-05	ci right 8.418568e-05	k: 52	n:810000
Cons ci ratio: 3.622352e-02	ci left: 1.399363e-02	ci right 1.451109e-02	k: 11543	n:810000
KS ci ratio: 7.156771e-01	ci left: 2.397760e-05	ci right 5.141792e-05	k: 29	n:810000
FBXW7   810000 perm   611 sec   (1326 perm/sec)   p_kst 3.580247e-05   p_cons 1.425062e-02   p_joint 6.419753e-05

Joint ci ratio: 5.384357e-01	ci left: 4.736143e-05	ci right 8.315903e-05	k: 52	n:820000
Cons ci ratio: 3.599028e-02	ci left: 1.400425e-02	ci right 1.451870e-02	k: 11693	n:820000
KS ci ratio: 7.156773e-01	ci left: 2.368519e-05	ci right 5.079087e-05	k: 29	n:820000
FBXW7   820000 perm   622 sec   (1319 perm/sec)   p_kst 3.536585e-05   p_cons 1.425976e-02   p_joint 6.341463e-05

Joint ci ratio: 5.334268e-01	ci left: 4.783245e-05	ci right 8.352364e-05	k: 53	n:830000
Cons ci ratio: 3.576302e-02	ci left: 1.401343e-02	ci right 1.452490e-02	k: 11842	n:830000
KS ci ratio: 7.156774e-01	ci left: 2.339983e-05	ci right 5.017894e-05	k: 29	n:830000
FBXW7   830000 perm   633 sec   (1310 perm/sec)   p_kst 3.493976e-05   p_cons 1.426747e-02   p_joint 6.385542e-05

Joint ci ratio: 5.334270e-01	ci left: 4.726301e-05	ci right 8.252932e-05	k: 53	n:840000
Cons ci ratio: 3.556259e-02	ci left: 1.400471e-02	ci right 1.451294e-02	k: 11976	n:840000
KS ci ratio: 7.156776e-01	ci left: 2.312126e-05	ci right 4.958158e-05	k: 29	n:840000
FBXW7   840000 perm   645 sec   (1303 perm/sec)   p_kst 3.452381e-05   p_cons 1.425714e-02   p_joint 6.309524e-05

Joint ci ratio: 5.285553e-01	ci left: 4.772560e-05	ci right 8.289130e-05	k: 54	n:850000
Cons ci ratio: 3.534477e-02	ci left: 1.401252e-02	ci right 1.451786e-02	k: 12124	n:850000
KS ci ratio: 7.156778e-01	ci left: 2.284924e-05	ci right 4.899827e-05	k: 29	n:850000
FBXW7   850000 perm   656 sec   (1296 perm/sec)   p_kst 3.411765e-05   p_cons 1.426353e-02   p_joint 6.352941e-05

Joint ci ratio: 5.285555e-01	ci left: 4.717065e-05	ci right 8.192746e-05	k: 54	n:860000
Cons ci ratio: 3.515997e-02	ci left: 1.399711e-02	ci right 1.449920e-02	k: 12252	n:860000
KS ci ratio: 7.156779e-01	ci left: 2.258355e-05	ci right 4.842852e-05	k: 29	n:860000
FBXW7   860000 perm   667 sec   (1289 perm/sec)   p_kst 3.372093e-05   p_cons 1.424651e-02   p_joint 6.279070e-05

Joint ci ratio: 5.191994e-01	ci left: 4.862311e-05	ci right 8.358616e-05	k: 56	n:870000
Cons ci ratio: 3.494656e-02	ci left: 1.400713e-02	ci right 1.450646e-02	k: 12402	n:870000
KS ci ratio: 6.929515e-01	ci left: 2.421046e-05	ci right 5.057666e-05	k: 31	n:870000
FBXW7   870000 perm   678 sec   (1283 perm/sec)   p_kst 3.563218e-05   p_cons 1.425517e-02   p_joint 6.436782e-05

Joint ci ratio: 5.191996e-01	ci left: 4.807057e-05	ci right 8.263633e-05	k: 56	n:880000
Cons ci ratio: 3.473980e-02	ci left: 1.401467e-02	ci right 1.451126e-02	k: 12550	n:880000
KS ci ratio: 6.929517e-01	ci left: 2.393534e-05	ci right 5.000193e-05	k: 31	n:880000
FBXW7   880000 perm   690 sec   (1276 perm/sec)   p_kst 3.522727e-05   p_cons 1.426136e-02   p_joint 6.363636e-05

Joint ci ratio: 5.147042e-01	ci left: 4.850736e-05	ci right 8.297687e-05	k: 57	n:890000
Cons ci ratio: 3.454632e-02	ci left: 1.401426e-02	ci right 1.450801e-02	k: 12691	n:890000
KS ci ratio: 6.929518e-01	ci left: 2.366641e-05	ci right 4.944012e-05	k: 31	n:890000
FBXW7   890000 perm   702 sec   (1268 perm/sec)   p_kst 3.483146e-05   p_cons 1.425955e-02   p_joint 6.404494e-05

Joint ci ratio: 5.147043e-01	ci left: 4.796839e-05	ci right 8.205491e-05	k: 57	n:900000
Cons ci ratio: 3.434519e-02	ci left: 1.402267e-02	ci right 1.451379e-02	k: 12840	n:900000
KS ci ratio: 6.823715e-01	ci left: 2.432010e-05	ci right 5.019347e-05	k: 32	n:900000
FBXW7   900000 perm   713 sec   (1262 perm/sec)   p_kst 3.555556e-05   p_cons 1.426667e-02   p_joint 6.333333e-05

Joint ci ratio: 5.147045e-01	ci left: 4.744126e-05	ci right 8.115322e-05	k: 57	n:910000
Cons ci ratio: 3.417823e-02	ci left: 1.400585e-02	ci right 1.449395e-02	k: 12966	n:910000
KS ci ratio: 6.823717e-01	ci left: 2.405284e-05	ci right 4.964190e-05	k: 32	n:910000
FBXW7   910000 perm   725 sec   (1254 perm/sec)   p_kst 3.516484e-05   p_cons 1.424835e-02   p_joint 6.263736e-05

Joint ci ratio: 5.334285e-01	ci left: 4.315315e-05	ci right 7.535292e-05	k: 53	n:920000
Cons ci ratio: 3.397554e-02	ci left: 1.402066e-02	ci right 1.450632e-02	k: 13121	n:920000
KS ci ratio: 6.722617e-01	ci left: 2.469108e-05	ci right 5.037384e-05	k: 33	n:920000
FBXW7   920000 perm   737 sec   (1248 perm/sec)   p_kst 3.586957e-05   p_cons 1.426196e-02   p_joint 5.760870e-05

Joint ci ratio: 5.543565e-01	ci left: 3.897925e-05	ci right 6.965597e-05	k: 49	n:930000
Cons ci ratio: 3.378544e-02	ci left: 1.402769e-02	ci right 1.451082e-02	k: 13269	n:930000
KS ci ratio: 6.625881e-01	ci left: 2.531840e-05	ci right 5.108736e-05	k: 34	n:930000
FBXW7   930000 perm   749 sec   (1241 perm/sec)   p_kst 3.655914e-05   p_cons 1.426774e-02   p_joint 5.268817e-05

Joint ci ratio: 5.488946e-01	ci left: 3.948000e-05	ci right 7.012575e-05	k: 50	n:940000
Cons ci ratio: 3.361757e-02	ci left: 1.401876e-02	ci right 1.449914e-02	k: 13402	n:940000
KS ci ratio: 6.625882e-01	ci left: 2.504905e-05	ci right 5.054388e-05	k: 34	n:940000
FBXW7   940000 perm   761 sec   (1235 perm/sec)   p_kst 3.617021e-05   p_cons 1.425745e-02   p_joint 5.319149e-05

Joint ci ratio: 5.488948e-01	ci left: 3.906442e-05	ci right 6.938759e-05	k: 50	n:950000
Cons ci ratio: 3.343214e-02	ci left: 1.402672e-02	ci right 1.450467e-02	k: 13551	n:950000
KS ci ratio: 6.625884e-01	ci left: 2.478537e-05	ci right 5.001185e-05	k: 34	n:950000
FBXW7   950000 perm   773 sec   (1229 perm/sec)   p_kst 3.578947e-05   p_cons 1.426421e-02   p_joint 5.263158e-05

Joint ci ratio: 5.543570e-01	ci left: 3.776114e-05	ci right 6.747924e-05	k: 49	n:960000
Cons ci ratio: 3.328426e-02	ci left: 1.400560e-02	ci right 1.448067e-02	k: 13672	n:960000
KS ci ratio: 6.444313e-01	ci left: 2.626467e-05	ci right 5.191543e-05	k: 36	n:960000
FBXW7   960000 perm   786 sec   (1222 perm/sec)   p_kst 3.750000e-05   p_cons 1.424167e-02   p_joint 5.104167e-05

Joint ci ratio: 5.543571e-01	ci left: 3.737184e-05	ci right 6.678358e-05	k: 49	n:970000
Cons ci ratio: 3.309819e-02	ci left: 1.401866e-02	ci right 1.449147e-02	k: 13826	n:970000
KS ci ratio: 6.444314e-01	ci left: 2.599390e-05	ci right 5.138023e-05	k: 36	n:970000
FBXW7   970000 perm   799 sec   (1214 perm/sec)   p_kst 3.711340e-05   p_cons 1.425361e-02   p_joint 5.051546e-05

Joint ci ratio: 5.488952e-01	ci left: 3.786856e-05	ci right 6.726350e-05	k: 50	n:980000
Cons ci ratio: 3.291281e-02	ci left: 1.403348e-02	ci right 1.450409e-02	k: 13982	n:980000
KS ci ratio: 6.444315e-01	ci left: 2.572866e-05	ci right 5.085594e-05	k: 36	n:980000
FBXW7   980000 perm   812 sec   (1207 perm/sec)   p_kst 3.673469e-05   p_cons 1.426735e-02   p_joint 5.102041e-05

Joint ci ratio: 5.435916e-01	ci left: 3.835665e-05	ci right 6.773236e-05	k: 51	n:990000
Cons ci ratio: 3.276816e-02	ci left: 1.401595e-02	ci right 1.448387e-02	k: 14106	n:990000
KS ci ratio: 6.444317e-01	ci left: 2.546877e-05	ci right 5.034225e-05	k: 36	n:990000
FBXW7   990000 perm   824 sec   (1201 perm/sec)   p_kst 3.636364e-05   p_cons 1.424848e-02   p_joint 5.151515e-05

Joint ci ratio: 5.435918e-01	ci left: 3.797308e-05	ci right 6.705504e-05	k: 51	n:1000000
Cons ci ratio: 3.260448e-02	ci left: 1.401663e-02	ci right 1.448219e-02	k: 14248	n:1000000
KS ci ratio: 6.444318e-01	ci left: 2.521408e-05	ci right 4.983883e-05	k: 36	n:1000000
FBXW7   1000000 perm   837 sec   (1194 perm/sec)   p_kst 3.600000e-05   p_cons 1.424800e-02   p_joint 5.100000e-05

Joint ci ratio: 5.384390e-01	ci left: 3.845180e-05	ci right 6.751538e-05	k: 52	n:1010000
Cons ci ratio: 3.241468e-02	ci left: 1.404186e-02	ci right 1.450549e-02	k: 14415	n:1010000
KS ci ratio: 6.358957e-01	ci left: 2.579361e-05	ci right 5.049433e-05	k: 37	n:1010000
FBXW7   1010000 perm   850 sec   (1188 perm/sec)   p_kst 3.663366e-05   p_cons 1.427228e-02   p_joint 5.148515e-05

Joint ci ratio: 5.384392e-01	ci left: 3.807482e-05	ci right 6.685347e-05	k: 52	n:1020000
Cons ci ratio: 3.222703e-02	ci left: 1.406757e-02	ci right 1.452931e-02	k: 14583	n:1020000
KS ci ratio: 6.358958e-01	ci left: 2.554073e-05	ci right 4.999929e-05	k: 37	n:1020000
FBXW7   1020000 perm   864 sec   (1181 perm/sec)   p_kst 3.627451e-05   p_cons 1.429706e-02   p_joint 5.098039e-05

Joint ci ratio: 5.334302e-01	ci left: 3.854454e-05	ci right 6.730559e-05	k: 53	n:1030000
Cons ci ratio: 3.208235e-02	ci left: 1.405811e-02	ci right 1.451744e-02	k: 14715	n:1030000
KS ci ratio: 6.358959e-01	ci left: 2.529276e-05	ci right 4.951386e-05	k: 37	n:1030000
FBXW7   1030000 perm   877 sec   (1175 perm/sec)   p_kst 3.592233e-05   p_cons 1.428641e-02   p_joint 5.145631e-05

Joint ci ratio: 5.192022e-01	ci left: 4.067505e-05	ci right 6.992315e-05	k: 56	n:1040000
Cons ci ratio: 3.191779e-02	ci left: 1.406793e-02	ci right 1.452517e-02	k: 14867	n:1040000
KS ci ratio: 6.276903e-01	ci left: 2.585692e-05	ci right 5.015155e-05	k: 38	n:1040000
FBXW7   1040000 perm   890 sec   (1169 perm/sec)   p_kst 3.653846e-05   p_cons 1.429519e-02   p_joint 5.384615e-05

Joint ci ratio: 5.192023e-01	ci left: 4.028767e-05	ci right 6.925722e-05	k: 56	n:1050000
Cons ci ratio: 3.177291e-02	ci left: 1.406244e-02	ci right 1.451739e-02	k: 15003	n:1050000
KS ci ratio: 6.197943e-01	ci left: 2.641233e-05	ci right 5.077516e-05	k: 39	n:1050000
FBXW7   1050000 perm   903 sec   (1163 perm/sec)   p_kst 3.714286e-05   p_cons 1.428857e-02   p_joint 5.333333e-05

Joint ci ratio: 5.147069e-01	ci left: 4.072783e-05	ci right 6.966936e-05	k: 57	n:1060000
Cons ci ratio: 3.163317e-02	ci left: 1.405425e-02	ci right 1.450690e-02	k: 15136	n:1060000
KS ci ratio: 6.197944e-01	ci left: 2.616316e-05	ci right 5.029615e-05	k: 39	n:1060000
FBXW7   1060000 perm   916 sec   (1157 perm/sec)   p_kst 3.679245e-05   p_cons 1.427925e-02   p_joint 5.377358e-05

Joint ci ratio: 5.285589e-01	ci left: 3.791280e-05	ci right 6.584836e-05	k: 54	n:1070000
Cons ci ratio: 3.147539e-02	ci left: 1.406384e-02	ci right 1.451450e-02	k: 15288	n:1070000
KS ci ratio: 6.197945e-01	ci left: 2.591864e-05	ci right 4.982610e-05	k: 39	n:1070000
FBXW7   1070000 perm   930 sec   (1151 perm/sec)   p_kst 3.644860e-05   p_cons 1.428785e-02   p_joint 5.046729e-05

Joint ci ratio: 5.285590e-01	ci left: 3.756176e-05	ci right 6.523866e-05	k: 54	n:1080000
Cons ci ratio: 3.132819e-02	ci left: 1.406590e-02	ci right 1.451448e-02	k: 15432	n:1080000
KS ci ratio: 6.197947e-01	ci left: 2.567865e-05	ci right 4.936475e-05	k: 39	n:1080000
FBXW7   1080000 perm   943 sec   (1145 perm/sec)   p_kst 3.611111e-05   p_cons 1.428889e-02   p_joint 5.000000e-05

Joint ci ratio: 5.238183e-01	ci left: 3.801263e-05	ci right 6.567845e-05	k: 55	n:1090000
Cons ci ratio: 3.120031e-02	ci left: 1.405246e-02	ci right 1.449875e-02	k: 15559	n:1090000
KS ci ratio: 6.197948e-01	ci left: 2.544307e-05	ci right 4.891187e-05	k: 39	n:1090000
FBXW7   1090000 perm   956 sec   (1140 perm/sec)   p_kst 3.577982e-05   p_cons 1.427431e-02   p_joint 5.045872e-05

Joint ci ratio: 5.238185e-01	ci left: 3.766706e-05	ci right 6.508138e-05	k: 55	n:1100000
Cons ci ratio: 3.105892e-02	ci left: 1.405280e-02	ci right 1.449704e-02	k: 15701	n:1100000
KS ci ratio: 6.197949e-01	ci left: 2.521177e-05	ci right 4.846722e-05	k: 39	n:1100000
FBXW7   1100000 perm   970 sec   (1134 perm/sec)   p_kst 3.545455e-05   p_cons 1.427364e-02   p_joint 5.000000e-05

Joint ci ratio: 5.238186e-01	ci left: 3.732771e-05	ci right 6.449507e-05	k: 55	n:1110000
Cons ci ratio: 3.092736e-02	ci left: 1.404598e-02	ci right 1.448809e-02	k: 15835	n:1110000
KS ci ratio: 6.197950e-01	ci left: 2.498463e-05	ci right 4.803058e-05	k: 39	n:1110000
FBXW7   1110000 perm   984 sec   (1128 perm/sec)   p_kst 3.513514e-05   p_cons 1.426577e-02   p_joint 4.954955e-05

Joint ci ratio: 5.238187e-01	ci left: 3.699443e-05	ci right 6.391922e-05	k: 55	n:1120000
Cons ci ratio: 3.079354e-02	ci left: 1.404283e-02	ci right 1.448290e-02	k: 15973	n:1120000
KS ci ratio: 6.197951e-01	ci left: 2.476155e-05	ci right 4.760173e-05	k: 39	n:1120000
FBXW7   1120000 perm   997 sec   (1123 perm/sec)   p_kst 3.482143e-05   p_cons 1.426161e-02   p_joint 4.910714e-05

Joint ci ratio: 5.285596e-01	ci left: 3.589972e-05	ci right 6.235201e-05	k: 54	n:1130000
Cons ci ratio: 3.065663e-02	ci left: 1.404414e-02	ci right 1.448225e-02	k: 16116	n:1130000
KS ci ratio: 6.121898e-01	ci left: 2.528913e-05	ci right 4.820203e-05	k: 40	n:1130000
FBXW7   1130000 perm   1011 sec   (1118 perm/sec)   p_kst 3.539823e-05   p_cons 1.426195e-02   p_joint 4.778761e-05

Joint ci ratio: 5.285597e-01	ci left: 3.558481e-05	ci right 6.180507e-05	k: 54	n:1140000
Cons ci ratio: 3.052247e-02	ci left: 1.404455e-02	ci right 1.448073e-02	k: 16258	n:1140000
KS ci ratio: 6.048577e-01	ci left: 2.580916e-05	ci right 4.879015e-05	k: 41	n:1140000
FBXW7   1140000 perm   1025 sec   (1112 perm/sec)   p_kst 3.596491e-05   p_cons 1.426140e-02   p_joint 4.736842e-05

Joint ci ratio: 5.238191e-01	ci left: 3.602935e-05	ci right 6.225178e-05	k: 55	n:1150000
Cons ci ratio: 3.037785e-02	ci left: 1.405618e-02	ci right 1.449062e-02	k: 16413	n:1150000
KS ci ratio: 6.048578e-01	ci left: 2.558473e-05	ci right 4.836589e-05	k: 41	n:1150000
FBXW7   1150000 perm   1040 sec   (1106 perm/sec)   p_kst 3.565217e-05   p_cons 1.427217e-02   p_joint 4.782609e-05

Joint ci ratio: 5.192037e-01	ci left: 3.646727e-05	ci right 6.268977e-05	k: 56	n:1160000
Cons ci ratio: 3.023804e-02	ci left: 1.406505e-02	ci right 1.449773e-02	k: 16565	n:1160000
KS ci ratio: 6.048579e-01	ci left: 2.536417e-05	ci right 4.794895e-05	k: 41	n:1160000
FBXW7   1160000 perm   1054 sec   (1101 perm/sec)   p_kst 3.534483e-05   p_cons 1.428017e-02   p_joint 4.827586e-05

Joint ci ratio: 5.103274e-01	ci left: 3.764280e-05	ci right 6.408368e-05	k: 58	n:1170000
Cons ci ratio: 3.012758e-02	ci left: 1.404832e-02	ci right 1.447888e-02	k: 16687	n:1170000
KS ci ratio: 5.977832e-01	ci left: 2.587183e-05	ci right 4.852260e-05	k: 42	n:1170000
FBXW7   1170000 perm   1068 sec   (1095 perm/sec)   p_kst 3.589744e-05   p_cons 1.426239e-02   p_joint 4.957265e-05

Joint ci ratio: 5.060567e-01	ci left: 3.806253e-05	ci right 6.449589e-05	k: 59	n:1180000
Cons ci ratio: 3.000384e-02	ci left: 1.404534e-02	ci right 1.447400e-02	k: 16825	n:1180000
KS ci ratio: 5.977833e-01	ci left: 2.565258e-05	ci right 4.811139e-05	k: 42	n:1180000
FBXW7   1180000 perm   1083 sec   (1090 perm/sec)   p_kst 3.559322e-05   p_cons 1.425847e-02   p_joint 5.000000e-05

Joint ci ratio: 5.018915e-01	ci left: 3.847611e-05	ci right 6.490028e-05	k: 60	n:1190000
Cons ci ratio: 2.986108e-02	ci left: 1.406159e-02	ci right 1.448868e-02	k: 16986	n:1190000
KS ci ratio: 5.977833e-01	ci left: 2.543701e-05	ci right 4.770710e-05	k: 42	n:1190000
FBXW7   1190000 perm   1098 sec   (1084 perm/sec)   p_kst 3.529412e-05   p_cons 1.427395e-02   p_joint 5.042017e-05

Joint ci ratio: 5.018916e-01	ci left: 3.815548e-05	ci right 6.435945e-05	k: 60	n:1200000
Cons ci ratio: 2.973617e-02	ci left: 1.406269e-02	ci right 1.448799e-02	k: 17129	n:1200000
KS ci ratio: 5.977834e-01	ci left: 2.522503e-05	ci right 4.730954e-05	k: 42	n:1200000
FBXW7   1200000 perm   1112 sec   (1079 perm/sec)   p_kst 3.500000e-05   p_cons 1.427417e-02   p_joint 5.000000e-05

Joint ci ratio: 4.978275e-01	ci left: 3.856233e-05	ci right 6.475743e-05	k: 61	n:1210000
Cons ci ratio: 2.962849e-02	ci left: 1.404901e-02	ci right 1.447233e-02	k: 17254	n:1210000
KS ci ratio: 5.909512e-01	ci left: 2.571856e-05	ci right 4.786807e-05	k: 43	n:1210000
FBXW7   1210000 perm   1126 sec   (1074 perm/sec)   p_kst 3.553719e-05   p_cons 1.425950e-02   p_joint 5.041322e-05

Joint ci ratio: 4.978276e-01	ci left: 3.824625e-05	ci right 6.422663e-05	k: 61	n:1220000
Cons ci ratio: 2.949444e-02	ci left: 1.406159e-02	ci right 1.448334e-02	k: 17411	n:1220000
KS ci ratio: 5.909513e-01	ci left: 2.550775e-05	ci right 4.747571e-05	k: 43	n:1220000
FBXW7   1220000 perm   1142 sec   (1069 perm/sec)   p_kst 3.524590e-05   p_cons 1.427131e-02   p_joint 5.000000e-05

Joint ci ratio: 4.938607e-01	ci left: 3.864659e-05	ci right 6.461840e-05	k: 62	n:1230000
Cons ci ratio: 2.938510e-02	ci left: 1.405218e-02	ci right 1.447206e-02	k: 17541	n:1230000
KS ci ratio: 5.909514e-01	ci left: 2.530037e-05	ci right 4.708973e-05	k: 43	n:1230000
FBXW7   1230000 perm   1158 sec   (1063 perm/sec)   p_kst 3.495935e-05   p_cons 1.426098e-02   p_joint 5.040650e-05

Joint ci ratio: 4.938608e-01	ci left: 3.833492e-05	ci right 6.409729e-05	k: 62	n:1240000
Cons ci ratio: 2.926941e-02	ci left: 1.405013e-02	ci right 1.446827e-02	k: 17680	n:1240000
KS ci ratio: 5.909515e-01	ci left: 2.509633e-05	ci right 4.670998e-05	k: 43	n:1240000
FBXW7   1240000 perm   1172 sec   (1058 perm/sec)   p_kst 3.467742e-05   p_cons 1.425806e-02   p_joint 5.000000e-05

Joint ci ratio: 4.938609e-01	ci left: 3.802824e-05	ci right 6.358452e-05	k: 62	n:1250000
Cons ci ratio: 2.915590e-02	ci left: 1.404732e-02	ci right 1.446373e-02	k: 17818	n:1250000
KS ci ratio: 5.909516e-01	ci left: 2.489556e-05	ci right 4.633630e-05	k: 43	n:1250000
FBXW7   1250000 perm   1187 sec   (1053 perm/sec)   p_kst 3.440000e-05   p_cons 1.425440e-02   p_joint 4.960000e-05

Joint ci ratio: 4.938610e-01	ci left: 3.772643e-05	ci right 6.307988e-05	k: 62	n:1260000
Cons ci ratio: 2.905520e-02	ci left: 1.403353e-02	ci right 1.444807e-02	k: 17942	n:1260000
KS ci ratio: 5.909517e-01	ci left: 2.469797e-05	ci right 4.596855e-05	k: 43	n:1260000
FBXW7   1260000 perm   1202 sec   (1048 perm/sec)   p_kst 3.412698e-05   p_cons 1.423968e-02   p_joint 4.920635e-05

Joint ci ratio: 4.899875e-01	ci left: 3.811905e-05	ci right 6.346757e-05	k: 63	n:1270000
Cons ci ratio: 2.895066e-02	ci left: 1.402465e-02	ci right 1.443741e-02	k: 18072	n:1270000
KS ci ratio: 5.909518e-01	ci left: 2.450350e-05	ci right 4.560660e-05	k: 43	n:1270000
FBXW7   1270000 perm   1218 sec   (1043 perm/sec)   p_kst 3.385827e-05   p_cons 1.422992e-02   p_joint 4.960630e-05

Joint ci ratio: 4.825060e-01	ci left: 3.919211e-05	ci right 6.472442e-05	k: 65	n:1280000
Cons ci ratio: 2.885769e-02	ci left: 1.400583e-02	ci right 1.441669e-02	k: 18189	n:1280000
KS ci ratio: 5.717800e-01	ci left: 2.631088e-05	ci right 4.793530e-05	k: 46	n:1280000
FBXW7   1280000 perm   1234 sec   (1038 perm/sec)   p_kst 3.593750e-05   p_cons 1.421016e-02   p_joint 5.078125e-05

Joint ci ratio: 4.825061e-01	ci left: 3.888829e-05	ci right 6.422268e-05	k: 65	n:1290000
Cons ci ratio: 2.874809e-02	ci left: 1.400423e-02	ci right 1.441346e-02	k: 18328	n:1290000
KS ci ratio: 5.717801e-01	ci left: 2.610692e-05	ci right 4.756371e-05	k: 46	n:1290000
FBXW7   1290000 perm   1250 sec   (1032 perm/sec)   p_kst 3.565891e-05   p_cons 1.420775e-02   p_joint 5.038760e-05

Joint ci ratio: 4.825062e-01	ci left: 3.858915e-05	ci right 6.372867e-05	k: 65	n:1300000
Cons ci ratio: 2.865391e-02	ci left: 1.398891e-02	ci right 1.439633e-02	k: 18449	n:1300000
KS ci ratio: 5.717802e-01	ci left: 2.590610e-05	ci right 4.719784e-05	k: 46	n:1300000
FBXW7   1300000 perm   1266 sec   (1027 perm/sec)   p_kst 3.538462e-05   p_cons 1.419154e-02   p_joint 5.000000e-05

Joint ci ratio: 4.825063e-01	ci left: 3.829457e-05	ci right 6.324219e-05	k: 65	n:1310000
Cons ci ratio: 2.854038e-02	ci left: 1.399354e-02	ci right 1.439945e-02	k: 18596	n:1310000
KS ci ratio: 5.717803e-01	ci left: 2.570834e-05	ci right 4.683755e-05	k: 46	n:1310000
FBXW7   1310000 perm   1281 sec   (1023 perm/sec)   p_kst 3.511450e-05   p_cons 1.419542e-02   p_joint 4.961832e-05

Joint ci ratio: 4.825064e-01	ci left: 3.800446e-05	ci right 6.276309e-05	k: 65	n:1320000
Cons ci ratio: 2.843050e-02	ci left: 1.399584e-02	ci right 1.440023e-02	k: 18740	n:1320000
KS ci ratio: 5.717804e-01	ci left: 2.551358e-05	ci right 4.648272e-05	k: 46	n:1320000
FBXW7   1320000 perm   1296 sec   (1018 perm/sec)   p_kst 3.484848e-05   p_cons 1.419697e-02   p_joint 4.924242e-05

Joint ci ratio: 4.825065e-01	ci left: 3.771871e-05	ci right 6.229119e-05	k: 65	n:1330000
Cons ci ratio: 2.833253e-02	ci left: 1.398766e-02	ci right 1.439040e-02	k: 18870	n:1330000
KS ci ratio: 5.717804e-01	ci left: 2.532175e-05	ci right 4.613323e-05	k: 46	n:1330000
FBXW7   1330000 perm   1313 sec   (1013 perm/sec)   p_kst 3.458647e-05   p_cons 1.418797e-02   p_joint 4.887218e-05

Joint ci ratio: 4.825066e-01	ci left: 3.743723e-05	ci right 6.182633e-05	k: 65	n:1340000
Cons ci ratio: 2.823406e-02	ci left: 1.398108e-02	ci right 1.438221e-02	k: 19002	n:1340000
KS ci ratio: 5.717805e-01	ci left: 2.513278e-05	ci right 4.578896e-05	k: 46	n:1340000
FBXW7   1340000 perm   1329 sec   (1008 perm/sec)   p_kst 3.432836e-05   p_cons 1.418060e-02   p_joint 4.850746e-05

Joint ci ratio: 4.825067e-01	ci left: 3.715991e-05	ci right 6.136836e-05	k: 65	n:1350000
Cons ci ratio: 2.812692e-02	ci left: 1.398417e-02	ci right 1.438384e-02	k: 19147	n:1350000
KS ci ratio: 5.717806e-01	ci left: 2.494661e-05	ci right 4.544978e-05	k: 46	n:1350000
FBXW7   1350000 perm   1346 sec   (1003 perm/sec)   p_kst 3.407407e-05   p_cons 1.418296e-02   p_joint 4.814815e-05

Joint ci ratio: 4.825068e-01	ci left: 3.688668e-05	ci right 6.091713e-05	k: 65	n:1360000
Cons ci ratio: 2.802836e-02	ci left: 1.397991e-02	ci right 1.437804e-02	k: 19282	n:1360000
KS ci ratio: 5.717807e-01	ci left: 2.476318e-05	ci right 4.511559e-05	k: 46	n:1360000
FBXW7   1360000 perm   1362 sec   (999 perm/sec)   p_kst 3.382353e-05   p_cons 1.417794e-02   p_joint 4.779412e-05

Joint ci ratio: 4.753579e-01	ci left: 3.790098e-05	ci right 6.210735e-05	k: 67	n:1370000
Cons ci ratio: 2.791917e-02	ci left: 1.398732e-02	ci right 1.438408e-02	k: 19433	n:1370000
KS ci ratio: 5.599898e-01	ci left: 2.583326e-05	ci right 4.645305e-05	k: 48	n:1370000
FBXW7   1370000 perm   1378 sec   (994 perm/sec)   p_kst 3.503650e-05   p_cons 1.418467e-02   p_joint 4.890511e-05

Joint ci ratio: 4.753579e-01	ci left: 3.762634e-05	ci right 6.165730e-05	k: 67	n:1380000
Cons ci ratio: 2.782637e-02	ci left: 1.397951e-02	ci right 1.437471e-02	k: 19563	n:1380000
KS ci ratio: 5.599899e-01	ci left: 2.564606e-05	ci right 4.611643e-05	k: 48	n:1380000
FBXW7   1380000 perm   1394 sec   (990 perm/sec)   p_kst 3.478261e-05   p_cons 1.417609e-02   p_joint 4.855072e-05

Joint ci ratio: 4.753580e-01	ci left: 3.735564e-05	ci right 6.121373e-05	k: 67	n:1390000
Cons ci ratio: 2.772379e-02	ci left: 1.398253e-02	ci right 1.437633e-02	k: 19708	n:1390000
KS ci ratio: 5.599899e-01	ci left: 2.546155e-05	ci right 4.578466e-05	k: 48	n:1390000
FBXW7   1390000 perm   1410 sec   (986 perm/sec)   p_kst 3.453237e-05   p_cons 1.417842e-02   p_joint 4.820144e-05

Joint ci ratio: 4.753581e-01	ci left: 3.708881e-05	ci right 6.077649e-05	k: 67	n:1400000
Cons ci ratio: 2.762022e-02	ci left: 1.398764e-02	ci right 1.438009e-02	k: 19856	n:1400000
KS ci ratio: 5.599900e-01	ci left: 2.527968e-05	ci right 4.545763e-05	k: 48	n:1400000
FBXW7   1400000 perm   1427 sec   (981 perm/sec)   p_kst 3.428571e-05   p_cons 1.418286e-02   p_joint 4.785714e-05

Joint ci ratio: 4.685178e-01	ci left: 3.807545e-05	ci right 6.193145e-05	k: 69	n:1410000
Cons ci ratio: 2.752059e-02	ci left: 1.398986e-02	ci right 1.438094e-02	k: 20000	n:1410000
KS ci ratio: 5.599901e-01	ci left: 2.510039e-05	ci right 4.513524e-05	k: 48	n:1410000
FBXW7   1410000 perm   1443 sec   (977 perm/sec)   p_kst 3.404255e-05   p_cons 1.418440e-02   p_joint 4.893617e-05

Joint ci ratio: 4.652066e-01	ci left: 3.842867e-05	ci right 6.228184e-05	k: 70	n:1420000
Cons ci ratio: 2.742272e-02	ci left: 1.399135e-02	ci right 1.438106e-02	k: 20143	n:1420000
KS ci ratio: 5.543618e-01	ci left: 2.552861e-05	ci right 4.561989e-05	k: 49	n:1420000
FBXW7   1420000 perm   1461 sec   (972 perm/sec)   p_kst 3.450704e-05   p_cons 1.418521e-02   p_joint 4.929577e-05

Joint ci ratio: 4.619646e-01	ci left: 3.877753e-05	ci right 6.262675e-05	k: 71	n:1430000
Cons ci ratio: 2.733136e-02	ci left: 1.398727e-02	ci right 1.437554e-02	k: 20278	n:1430000
KS ci ratio: 5.488998e-01	ci left: 2.595183e-05	ci right 4.609678e-05	k: 50	n:1430000
FBXW7   1430000 perm   1477 sec   (968 perm/sec)   p_kst 3.496503e-05   p_cons 1.418042e-02   p_joint 4.965035e-05

Joint ci ratio: 4.587895e-01	ci left: 3.912212e-05	ci right 6.296632e-05	k: 72	n:1440000
Cons ci ratio: 2.723143e-02	ci left: 1.399290e-02	ci right 1.437989e-02	k: 20427	n:1440000
KS ci ratio: 5.384433e-01	ci left: 2.696962e-05	ci right 4.735465e-05	k: 52	n:1440000
FBXW7   1440000 perm   1494 sec   (964 perm/sec)   p_kst 3.611111e-05   p_cons 1.418542e-02   p_joint 5.000000e-05

Joint ci ratio: 4.556790e-01	ci left: 3.946251e-05	ci right 6.330065e-05	k: 73	n:1450000
Cons ci ratio: 2.713192e-02	ci left: 1.399914e-02	ci right 1.438487e-02	k: 20577	n:1450000
KS ci ratio: 5.384434e-01	ci left: 2.678362e-05	ci right 4.702807e-05	k: 52	n:1450000
FBXW7   1450000 perm   1511 sec   (960 perm/sec)   p_kst 3.586207e-05   p_cons 1.419103e-02   p_joint 5.034483e-05

Joint ci ratio: 4.526308e-01	ci left: 3.979878e-05	ci right 6.362988e-05	k: 74	n:1460000
Cons ci ratio: 2.703945e-02	ci left: 1.399918e-02	ci right 1.438357e-02	k: 20718	n:1460000
KS ci ratio: 5.384435e-01	ci left: 2.660017e-05	ci right 4.670596e-05	k: 52	n:1460000
FBXW7   1460000 perm   1527 sec   (956 perm/sec)   p_kst 3.561644e-05   p_cons 1.419041e-02   p_joint 5.068493e-05

Joint ci ratio: 4.652070e-01	ci left: 3.712157e-05	ci right 6.016342e-05	k: 70	n:1470000
Cons ci ratio: 2.694792e-02	ci left: 1.399922e-02	ci right 1.438229e-02	k: 20859	n:1470000
KS ci ratio: 5.334345e-01	ci left: 2.700735e-05	ci right 4.715981e-05	k: 53	n:1470000
FBXW7   1470000 perm   1544 sec   (952 perm/sec)   p_kst 3.605442e-05   p_cons 1.418980e-02   p_joint 4.761905e-05

Joint ci ratio: 4.652071e-01	ci left: 3.687074e-05	ci right 5.975692e-05	k: 70	n:1480000
Cons ci ratio: 2.686056e-02	ci left: 1.399590e-02	ci right 1.437762e-02	k: 20995	n:1480000
KS ci ratio: 5.334345e-01	ci left: 2.682487e-05	ci right 4.684116e-05	k: 53	n:1480000
FBXW7   1480000 perm   1562 sec   (948 perm/sec)   p_kst 3.581081e-05   p_cons 1.418581e-02   p_joint 4.729730e-05

Joint ci ratio: 4.619651e-01	ci left: 3.721601e-05	ci right 6.010489e-05	k: 71	n:1490000
Cons ci ratio: 2.677789e-02	ci left: 1.398863e-02	ci right 1.436896e-02	k: 21125	n:1490000
KS ci ratio: 5.285628e-01	ci left: 2.722593e-05	ci right 4.728718e-05	k: 54	n:1490000
FBXW7   1490000 perm   1579 sec   (943 perm/sec)   p_kst 3.624161e-05   p_cons 1.417785e-02   p_joint 4.765101e-05

Joint ci ratio: 4.619652e-01	ci left: 3.696791e-05	ci right 5.970419e-05	k: 71	n:1500000
Cons ci ratio: 2.668389e-02	ci left: 1.399405e-02	ci right 1.437317e-02	k: 21274	n:1500000
KS ci ratio: 5.285628e-01	ci left: 2.704442e-05	ci right 4.697193e-05	k: 54	n:1500000
FBXW7   1500000 perm   1597 sec   (939 perm/sec)   p_kst 3.600000e-05   p_cons 1.418267e-02   p_joint 4.733333e-05

Joint ci ratio: 4.899895e-01	ci left: 3.206036e-05	ci right 5.338006e-05	k: 63	n:1510000
Cons ci ratio: 2.659025e-02	ci left: 1.400005e-02	ci right 1.437798e-02	k: 21424	n:1510000
KS ci ratio: 5.285629e-01	ci left: 2.686532e-05	ci right 4.666086e-05	k: 54	n:1510000
FBXW7   1510000 perm   1615 sec   (935 perm/sec)   p_kst 3.576159e-05   p_cons 1.418808e-02   p_joint 4.172185e-05

Joint ci ratio: 4.899895e-01	ci left: 3.184944e-05	ci right 5.302888e-05	k: 63	n:1520000
Cons ci ratio: 2.650568e-02	ci left: 1.399747e-02	ci right 1.437412e-02	k: 21561	n:1520000
KS ci ratio: 5.285630e-01	ci left: 2.668857e-05	ci right 4.635388e-05	k: 54	n:1520000
FBXW7   1520000 perm   1633 sec   (931 perm/sec)   p_kst 3.552632e-05   p_cons 1.418487e-02   p_joint 4.144737e-05

Joint ci ratio: 4.899896e-01	ci left: 3.164127e-05	ci right 5.268229e-05	k: 63	n:1530000
Cons ci ratio: 2.640958e-02	ci left: 1.400792e-02	ci right 1.438346e-02	k: 21718	n:1530000
KS ci ratio: 5.285630e-01	ci left: 2.651414e-05	ci right 4.605092e-05	k: 54	n:1530000
FBXW7   1530000 perm   1650 sec   (927 perm/sec)   p_kst 3.529412e-05   p_cons 1.419477e-02   p_joint 4.117647e-05

Joint ci ratio: 4.862057e-01	ci left: 3.200521e-05	ci right 5.306890e-05	k: 64	n:1540000
Cons ci ratio: 2.632244e-02	ci left: 1.400985e-02	ci right 1.438418e-02	k: 21862	n:1540000
KS ci ratio: 5.238223e-01	ci left: 2.690500e-05	ci right 4.648680e-05	k: 55	n:1540000
FBXW7   1540000 perm   1667 sec   (924 perm/sec)   p_kst 3.571429e-05   p_cons 1.419610e-02   p_joint 4.155844e-05

Joint ci ratio: 4.788937e-01	ci left: 3.293202e-05	ci right 5.417271e-05	k: 66	n:1550000
Cons ci ratio: 2.624827e-02	ci left: 1.399894e-02	ci right 1.437191e-02	k: 21986	n:1550000
KS ci ratio: 5.238224e-01	ci left: 2.673142e-05	ci right 4.618689e-05	k: 55	n:1550000
FBXW7   1550000 perm   1685 sec   (920 perm/sec)   p_kst 3.548387e-05   p_cons 1.418452e-02   p_joint 4.258065e-05

Joint ci ratio: 4.788938e-01	ci left: 3.272091e-05	ci right 5.382545e-05	k: 66	n:1560000
Cons ci ratio: 2.616091e-02	ci left: 1.400282e-02	ci right 1.437463e-02	k: 22133	n:1560000
KS ci ratio: 5.192070e-01	ci left: 2.711665e-05	ci right 4.661556e-05	k: 56	n:1560000
FBXW7   1560000 perm   1703 sec   (916 perm/sec)   p_kst 3.589744e-05   p_cons 1.418782e-02   p_joint 4.230769e-05

Joint ci ratio: 4.753594e-01	ci left: 3.307281e-05	ci right 5.419563e-05	k: 67	n:1570000
Cons ci ratio: 2.608274e-02	ci left: 1.399779e-02	ci right 1.436834e-02	k: 22266	n:1570000
KS ci ratio: 5.147115e-01	ci left: 2.749772e-05	ci right 4.703804e-05	k: 57	n:1570000
FBXW7   1570000 perm   1721 sec   (912 perm/sec)   p_kst 3.630573e-05   p_cons 1.418217e-02   p_joint 4.267516e-05

Joint ci ratio: 4.685191e-01	ci left: 3.397871e-05	ci right 5.526798e-05	k: 69	n:1580000
Cons ci ratio: 2.599174e-02	ci left: 1.400729e-02	ci right 1.437678e-02	k: 22422	n:1580000
KS ci ratio: 5.103308e-01	ci left: 2.787469e-05	ci right 4.745446e-05	k: 58	n:1580000
FBXW7   1580000 perm   1739 sec   (909 perm/sec)   p_kst 3.670886e-05   p_cons 1.419114e-02   p_joint 4.367089e-05

Joint ci ratio: 4.753595e-01	ci left: 3.265680e-05	ci right 5.351393e-05	k: 67	n:1590000
Cons ci ratio: 2.590750e-02	ci left: 1.401042e-02	ci right 1.437878e-02	k: 22568	n:1590000
KS ci ratio: 5.103309e-01	ci left: 2.769938e-05	ci right 4.715601e-05	k: 58	n:1590000
FBXW7   1590000 perm   1757 sec   (905 perm/sec)   p_kst 3.647799e-05   p_cons 1.419371e-02   p_joint 4.213836e-05

Joint ci ratio: 4.753596e-01	ci left: 3.245269e-05	ci right 5.317947e-05	k: 67	n:1600000
Cons ci ratio: 2.583619e-02	ci left: 1.400047e-02	ci right 1.436754e-02	k: 22693	n:1600000
KS ci ratio: 5.103310e-01	ci left: 2.752626e-05	ci right 4.686128e-05	k: 58	n:1600000
FBXW7   1600000 perm   1775 sec   (901 perm/sec)   p_kst 3.625000e-05   p_cons 1.418312e-02   p_joint 4.187500e-05

Joint ci ratio: 4.719023e-01	ci left: 3.279807e-05	ci right 5.354392e-05	k: 68	n:1610000
Cons ci ratio: 2.575402e-02	ci left: 1.400299e-02	ci right 1.436894e-02	k: 22838	n:1610000
KS ci ratio: 5.103310e-01	ci left: 2.735529e-05	ci right 4.657022e-05	k: 58	n:1610000
FBXW7   1610000 perm   1793 sec   (898 perm/sec)   p_kst 3.602484e-05   p_cons 1.418509e-02   p_joint 4.223602e-05

Joint ci ratio: 4.685193e-01	ci left: 3.313973e-05	ci right 5.390335e-05	k: 69	n:1620000
Cons ci ratio: 2.567262e-02	ci left: 1.400549e-02	ci right 1.437033e-02	k: 22983	n:1620000
KS ci ratio: 5.103311e-01	ci left: 2.718642e-05	ci right 4.628275e-05	k: 58	n:1620000
FBXW7   1620000 perm   1811 sec   (894 perm/sec)   p_kst 3.580247e-05   p_cons 1.418704e-02   p_joint 4.259259e-05

Joint ci ratio: 4.685194e-01	ci left: 3.293641e-05	ci right 5.357265e-05	k: 69	n:1630000
Cons ci ratio: 2.559032e-02	ci left: 1.400978e-02	ci right 1.437354e-02	k: 23131	n:1630000
KS ci ratio: 5.103311e-01	ci left: 2.701964e-05	ci right 4.599881e-05	k: 58	n:1630000
FBXW7   1630000 perm   1830 sec   (891 perm/sec)   p_kst 3.558282e-05   p_cons 1.419080e-02   p_joint 4.233129e-05

Joint ci ratio: 4.652082e-01	ci left: 3.327358e-05	ci right 5.392701e-05	k: 70	n:1640000
Cons ci ratio: 2.552214e-02	ci left: 1.399948e-02	ci right 1.436199e-02	k: 23255	n:1640000
KS ci ratio: 5.060604e-01	ci left: 2.738641e-05	ci right 4.640567e-05	k: 59	n:1640000
FBXW7   1640000 perm   1849 sec   (887 perm/sec)   p_kst 3.597561e-05   p_cons 1.417988e-02   p_joint 4.268293e-05

Joint ci ratio: 4.652083e-01	ci left: 3.307192e-05	ci right 5.360018e-05	k: 70	n:1650000
Cons ci ratio: 2.544347e-02	ci left: 1.400135e-02	ci right 1.436278e-02	k: 23399	n:1650000
KS ci ratio: 5.060605e-01	ci left: 2.722043e-05	ci right 4.612443e-05	k: 59	n:1650000
FBXW7   1650000 perm   1867 sec   (884 perm/sec)   p_kst 3.575758e-05   p_cons 1.418121e-02   p_joint 4.242424e-05

Joint ci ratio: 4.619663e-01	ci left: 3.340472e-05	ci right 5.394960e-05	k: 71	n:1660000
Cons ci ratio: 2.536772e-02	ci left: 1.400081e-02	ci right 1.436113e-02	k: 23539	n:1660000
KS ci ratio: 5.018952e-01	ci left: 2.758223e-05	ci right 4.652500e-05	k: 60	n:1660000
FBXW7   1660000 perm   1886 sec   (880 perm/sec)   p_kst 3.614458e-05   p_cons 1.418012e-02   p_joint 4.277108e-05

Joint ci ratio: 4.526323e-01	ci left: 3.479412e-05	ci right 5.562856e-05	k: 74	n:1670000
Cons ci ratio: 2.529209e-02	ci left: 1.400087e-02	ci right 1.436010e-02	k: 23680	n:1670000
KS ci ratio: 4.978311e-01	ci left: 2.794033e-05	ci right 4.692015e-05	k: 61	n:1670000
FBXW7   1670000 perm   1904 sec   (877 perm/sec)   p_kst 3.652695e-05   p_cons 1.417964e-02   p_joint 4.431138e-05

Joint ci ratio: 4.526324e-01	ci left: 3.458701e-05	ci right 5.529744e-05	k: 74	n:1680000
Cons ci ratio: 2.521713e-02	ci left: 1.400093e-02	ci right 1.435908e-02	k: 23821	n:1680000
KS ci ratio: 4.978312e-01	ci left: 2.777402e-05	ci right 4.664086e-05	k: 61	n:1680000
FBXW7   1680000 perm   1923 sec   (874 perm/sec)   p_kst 3.630952e-05   p_cons 1.417917e-02   p_joint 4.404762e-05

Joint ci ratio: 4.526324e-01	ci left: 3.438235e-05	ci right 5.497024e-05	k: 74	n:1690000
Cons ci ratio: 2.515029e-02	ci left: 1.399276e-02	ci right 1.434974e-02	k: 23948	n:1690000
KS ci ratio: 4.978312e-01	ci left: 2.760967e-05	ci right 4.636488e-05	k: 61	n:1690000
FBXW7   1690000 perm   1942 sec   (870 perm/sec)   p_kst 3.609467e-05   p_cons 1.417041e-02   p_joint 4.378698e-05

Joint ci ratio: 4.526325e-01	ci left: 3.418010e-05	ci right 5.464689e-05	k: 74	n:1700000
Cons ci ratio: 2.507025e-02	ci left: 1.399988e-02	ci right 1.435589e-02	k: 24101	n:1700000
KS ci ratio: 4.978313e-01	ci left: 2.744726e-05	ci right 4.609215e-05	k: 61	n:1700000
FBXW7   1700000 perm   1962 sec   (867 perm/sec)   p_kst 3.588235e-05   p_cons 1.417706e-02   p_joint 4.352941e-05

Joint ci ratio: 4.526326e-01	ci left: 3.398022e-05	ci right 5.432732e-05	k: 74	n:1710000
Cons ci ratio: 2.499725e-02	ci left: 1.399995e-02	ci right 1.435491e-02	k: 24242	n:1710000
KS ci ratio: 4.978313e-01	ci left: 2.728675e-05	ci right 4.582260e-05	k: 61	n:1710000
FBXW7   1710000 perm   1981 sec   (863 perm/sec)   p_kst 3.567251e-05   p_cons 1.417661e-02   p_joint 4.327485e-05

Joint ci ratio: 5.238234e-01	ci left: 2.408935e-05	ci right 4.162193e-05	k: 55	n:1720000
Cons ci ratio: 2.492954e-02	ci left: 1.399482e-02	ci right 1.434868e-02	k: 24374	n:1720000
KS ci ratio: 4.938644e-01	ci left: 2.763676e-05	ci right 4.620977e-05	k: 62	n:1720000
FBXW7   1720000 perm   2000 sec   (860 perm/sec)   p_kst 3.604651e-05   p_cons 1.417093e-02   p_joint 3.197674e-05

Joint ci ratio: 5.238234e-01	ci left: 2.395010e-05	ci right 4.138134e-05	k: 55	n:1730000
Cons ci ratio: 2.484594e-02	ci left: 1.400813e-02	ci right 1.436113e-02	k: 24538	n:1730000
KS ci ratio: 4.938644e-01	ci left: 2.747701e-05	ci right 4.594266e-05	k: 62	n:1730000
FBXW7   1730000 perm   2020 sec   (856 perm/sec)   p_kst 3.583815e-05   p_cons 1.418382e-02   p_joint 3.179191e-05

Joint ci ratio: 5.238235e-01	ci left: 2.381246e-05	ci right 4.114352e-05	k: 55	n:1740000
Cons ci ratio: 2.478098e-02	ci left: 1.400130e-02	ci right 1.435319e-02	k: 24667	n:1740000
KS ci ratio: 4.938645e-01	ci left: 2.731910e-05	ci right 4.567862e-05	k: 62	n:1740000
FBXW7   1740000 perm   2043 sec   (852 perm/sec)   p_kst 3.563218e-05   p_cons 1.417644e-02   p_joint 3.160920e-05

Joint ci ratio: 5.147125e-01	ci left: 2.466937e-05	ci right 4.219986e-05	k: 57	n:1750000
Cons ci ratio: 2.470289e-02	ci left: 1.400989e-02	ci right 1.436086e-02	k: 24823	n:1750000
KS ci ratio: 4.899909e-01	ci left: 2.766350e-05	ci right 4.605941e-05	k: 63	n:1750000
FBXW7   1750000 perm   2063 sec   (848 perm/sec)   p_kst 3.600000e-05   p_cons 1.418457e-02   p_joint 3.257143e-05

Joint ci ratio: 5.103318e-01	ci left: 2.502386e-05	ci right 4.260119e-05	k: 58	n:1760000
Cons ci ratio: 2.463754e-02	ci left: 1.400482e-02	ci right 1.435473e-02	k: 24955	n:1760000
KS ci ratio: 4.862070e-01	ci left: 2.800454e-05	ci right 4.643532e-05	k: 64	n:1760000
FBXW7   1760000 perm   2083 sec   (845 perm/sec)   p_kst 3.636364e-05   p_cons 1.417898e-02   p_joint 3.295455e-05

Joint ci ratio: 5.103319e-01	ci left: 2.488248e-05	ci right 4.236050e-05	k: 58	n:1770000
Cons ci ratio: 2.456874e-02	ci left: 1.400431e-02	ci right 1.435321e-02	k: 25095	n:1770000
KS ci ratio: 4.862071e-01	ci left: 2.784632e-05	ci right 4.617297e-05	k: 64	n:1770000
FBXW7   1770000 perm   2103 sec   (842 perm/sec)   p_kst 3.615819e-05   p_cons 1.417797e-02   p_joint 3.276836e-05

Joint ci ratio: 5.103319e-01	ci left: 2.474269e-05	ci right 4.212252e-05	k: 58	n:1780000
Cons ci ratio: 2.450149e-02	ci left: 1.400269e-02	ci right 1.435058e-02	k: 25233	n:1780000
KS ci ratio: 4.862071e-01	ci left: 2.768988e-05	ci right 4.591358e-05	k: 64	n:1780000
FBXW7   1780000 perm   2123 sec   (839 perm/sec)   p_kst 3.595506e-05   p_cons 1.417584e-02   p_joint 3.258427e-05

Joint ci ratio: 5.103320e-01	ci left: 2.460446e-05	ci right 4.188720e-05	k: 58	n:1790000
Cons ci ratio: 2.443382e-02	ci left: 1.400219e-02	ci right 1.434910e-02	k: 25373	n:1790000
KS ci ratio: 4.862072e-01	ci left: 2.753519e-05	ci right 4.565708e-05	k: 64	n:1790000
FBXW7   1790000 perm   2142 sec   (836 perm/sec)   p_kst 3.575419e-05   p_cons 1.417486e-02   p_joint 3.240223e-05

Joint ci ratio: 5.103320e-01	ci left: 2.446777e-05	ci right 4.165450e-05	k: 58	n:1800000
Cons ci ratio: 2.437785e-02	ci left: 1.398901e-02	ci right 1.433478e-02	k: 25490	n:1800000
KS ci ratio: 4.862072e-01	ci left: 2.738221e-05	ci right 4.540343e-05	k: 64	n:1800000
FBXW7   1800000 perm   2162 sec   (832 perm/sec)   p_kst 3.555556e-05   p_cons 1.416111e-02   p_joint 3.222222e-05

Joint ci ratio: 5.238238e-01	ci left: 2.289153e-05	ci right 3.955234e-05	k: 55	n:1810000
Cons ci ratio: 2.431023e-02	ci left: 1.398969e-02	ci right 1.433451e-02	k: 25632	n:1810000
KS ci ratio: 4.825097e-01	ci left: 2.771592e-05	ci right 4.577206e-05	k: 65	n:1810000
FBXW7   1810000 perm   2183 sec   (829 perm/sec)   p_kst 3.591160e-05   p_cons 1.416133e-02   p_joint 3.038674e-05

Joint ci ratio: 5.238238e-01	ci left: 2.276575e-05	ci right 3.933502e-05	k: 55	n:1820000
Cons ci ratio: 2.424889e-02	ci left: 1.398382e-02	ci right 1.432762e-02	k: 25762	n:1820000
KS ci ratio: 4.825098e-01	ci left: 2.756364e-05	ci right 4.552057e-05	k: 65	n:1820000
FBXW7   1820000 perm   2203 sec   (826 perm/sec)   p_kst 3.571429e-05   p_cons 1.415495e-02   p_joint 3.021978e-05

Joint ci ratio: 5.238239e-01	ci left: 2.264135e-05	ci right 3.912007e-05	k: 55	n:1830000
Cons ci ratio: 2.419087e-02	ci left: 1.397476e-02	ci right 1.431749e-02	k: 25886	n:1830000
KS ci ratio: 4.825098e-01	ci left: 2.741301e-05	ci right 4.527182e-05	k: 65	n:1830000
FBXW7   1830000 perm   2223 sec   (823 perm/sec)   p_kst 3.551913e-05   p_cons 1.414536e-02   p_joint 3.005464e-05

Joint ci ratio: 5.238239e-01	ci left: 2.251830e-05	ci right 3.890747e-05	k: 55	n:1840000
Cons ci ratio: 2.413231e-02	ci left: 1.396687e-02	ci right 1.430857e-02	k: 26012	n:1840000
KS ci ratio: 4.825099e-01	ci left: 2.726403e-05	ci right 4.502578e-05	k: 65	n:1840000
FBXW7   1840000 perm   2244 sec   (820 perm/sec)   p_kst 3.532609e-05   p_cons 1.413696e-02   p_joint 2.989130e-05

Joint ci ratio: 5.238240e-01	ci left: 2.239658e-05	ci right 3.869716e-05	k: 55	n:1850000
Cons ci ratio: 2.407278e-02	ci left: 1.396068e-02	ci right 1.430138e-02	k: 26141	n:1850000
KS ci ratio: 4.788954e-01	ci left: 2.759167e-05	ci right 4.538799e-05	k: 66	n:1850000
FBXW7   1850000 perm   2264 sec   (817 perm/sec)   p_kst 3.567568e-05   p_cons 1.413027e-02   p_joint 2.972973e-05

Joint ci ratio: 5.238240e-01	ci left: 2.227617e-05	ci right 3.848911e-05	k: 55	n:1860000
Cons ci ratio: 2.400627e-02	ci left: 1.396311e-02	ci right 1.430292e-02	k: 26286	n:1860000
KS ci ratio: 4.788955e-01	ci left: 2.744333e-05	ci right 4.514397e-05	k: 66	n:1860000
FBXW7   1860000 perm   2285 sec   (814 perm/sec)   p_kst 3.548387e-05   p_cons 1.413226e-02   p_joint 2.956989e-05

Joint ci ratio: 5.238241e-01	ci left: 2.215704e-05	ci right 3.828328e-05	k: 55	n:1870000
Cons ci ratio: 2.393617e-02	ci left: 1.397031e-02	ci right 1.430928e-02	k: 26440	n:1870000
KS ci ratio: 4.788955e-01	ci left: 2.729657e-05	ci right 4.490256e-05	k: 66	n:1870000
FBXW7   1870000 perm   2306 sec   (811 perm/sec)   p_kst 3.529412e-05   p_cons 1.413904e-02   p_joint 2.941176e-05

Joint ci ratio: 5.147131e-01	ci left: 2.296351e-05	ci right 3.928180e-05	k: 57	n:1880000
Cons ci ratio: 2.387853e-02	ci left: 1.396367e-02	ci right 1.430166e-02	k: 26568	n:1880000
KS ci ratio: 4.753611e-01	ci left: 2.761929e-05	ci right 4.525916e-05	k: 67	n:1880000
FBXW7   1880000 perm   2327 sec   (808 perm/sec)   p_kst 3.563830e-05   p_cons 1.413191e-02   p_joint 3.031915e-05

Joint ci ratio: 5.147132e-01	ci left: 2.284201e-05	ci right 3.907396e-05	k: 57	n:1890000
Cons ci ratio: 2.381136e-02	ci left: 1.396868e-02	ci right 1.430582e-02	k: 26718	n:1890000
KS ci ratio: 4.753611e-01	ci left: 2.747316e-05	ci right 4.501970e-05	k: 67	n:1890000
FBXW7   1890000 perm   2348 sec   (805 perm/sec)   p_kst 3.544974e-05   p_cons 1.413651e-02   p_joint 3.015873e-05

Joint ci ratio: 5.060617e-01	ci left: 2.363878e-05	ci right 4.005545e-05	k: 59	n:1900000
Cons ci ratio: 2.374923e-02	ci left: 1.396841e-02	ci right 1.430465e-02	k: 26858	n:1900000
KS ci ratio: 4.753612e-01	ci left: 2.732856e-05	ci right 4.478275e-05	k: 67	n:1900000
FBXW7   1900000 perm   2369 sec   (802 perm/sec)   p_kst 3.526316e-05   p_cons 1.413579e-02   p_joint 3.105263e-05

Joint ci ratio: 5.018964e-01	ci left: 2.397198e-05	ci right 4.043536e-05	k: 60	n:1910000
Cons ci ratio: 2.369871e-02	ci left: 1.395513e-02	ci right 1.429033e-02	k: 26973	n:1910000
KS ci ratio: 4.753612e-01	ci left: 2.718548e-05	ci right 4.454829e-05	k: 67	n:1910000
FBXW7   1910000 perm   2390 sec   (799 perm/sec)   p_kst 3.507853e-05   p_cons 1.412199e-02   p_joint 3.141361e-05

Joint ci ratio: 4.978323e-01	ci left: 2.430225e-05	ci right 4.081078e-05	k: 61	n:1920000
Cons ci ratio: 2.364188e-02	ci left: 1.394975e-02	ci right 1.428401e-02	k: 27103	n:1920000
KS ci ratio: 4.753613e-01	ci left: 2.704389e-05	ci right 4.431627e-05	k: 67	n:1920000
FBXW7   1920000 perm   2411 sec   (796 perm/sec)   p_kst 3.489583e-05   p_cons 1.411615e-02   p_joint 3.177083e-05

Joint ci ratio: 4.978324e-01	ci left: 2.417634e-05	ci right 4.059933e-05	k: 61	n:1930000
Cons ci ratio: 2.357887e-02	ci left: 1.395216e-02	ci right 1.428557e-02	k: 27248	n:1930000
KS ci ratio: 4.753613e-01	ci left: 2.690377e-05	ci right 4.408665e-05	k: 67	n:1930000
FBXW7   1930000 perm   2432 sec   (793 perm/sec)   p_kst 3.471503e-05   p_cons 1.411813e-02   p_joint 3.160622e-05

Joint ci ratio: 4.978324e-01	ci left: 2.405171e-05	ci right 4.039005e-05	k: 61	n:1940000
Cons ci ratio: 2.351201e-02	ci left: 1.395967e-02	ci right 1.429230e-02	k: 27403	n:1940000
KS ci ratio: 4.753614e-01	ci left: 2.676509e-05	ci right 4.385940e-05	k: 67	n:1940000
FBXW7   1940000 perm   2454 sec   (791 perm/sec)   p_kst 3.453608e-05   p_cons 1.412526e-02   p_joint 3.144330e-05

Joint ci ratio: 4.938655e-01	ci left: 2.437703e-05	ci right 4.075941e-05	k: 62	n:1950000
Cons ci ratio: 2.345132e-02	ci left: 1.396047e-02	ci right 1.429225e-02	k: 27545	n:1950000
KS ci ratio: 4.753614e-01	ci left: 2.662783e-05	ci right 4.363448e-05	k: 67	n:1950000
FBXW7   1950000 perm   2475 sec   (788 perm/sec)   p_kst 3.435897e-05   p_cons 1.412564e-02   p_joint 3.179487e-05

Joint ci ratio: 4.899919e-01	ci left: 2.469954e-05	ci right 4.112449e-05	k: 63	n:1960000
Cons ci ratio: 2.338554e-02	ci left: 1.396787e-02	ci right 1.429888e-02	k: 27700	n:1960000
KS ci ratio: 4.685211e-01	ci left: 2.739098e-05	ci right 4.455281e-05	k: 69	n:1960000
FBXW7   1960000 perm   2497 sec   (785 perm/sec)   p_kst 3.520408e-05   p_cons 1.413265e-02   p_joint 3.214286e-05

Joint ci ratio: 4.899919e-01	ci left: 2.457416e-05	ci right 4.091574e-05	k: 63	n:1970000
Cons ci ratio: 2.333305e-02	ci left: 1.396004e-02	ci right 1.429012e-02	k: 27825	n:1970000
KS ci ratio: 4.685212e-01	ci left: 2.725194e-05	ci right 4.432665e-05	k: 69	n:1970000
FBXW7   1970000 perm   2519 sec   (782 perm/sec)   p_kst 3.502538e-05   p_cons 1.412437e-02   p_joint 3.197970e-05

Joint ci ratio: 4.899920e-01	ci left: 2.445005e-05	ci right 4.070910e-05	k: 63	n:1980000
Cons ci ratio: 2.327627e-02	ci left: 1.395783e-02	ci right 1.428703e-02	k: 27961	n:1980000
KS ci ratio: 4.685212e-01	ci left: 2.711430e-05	ci right 4.410278e-05	k: 69	n:1980000
FBXW7   1980000 perm   2540 sec   (780 perm/sec)   p_kst 3.484848e-05   p_cons 1.412172e-02   p_joint 3.181818e-05

Joint ci ratio: 4.899920e-01	ci left: 2.432718e-05	ci right 4.050453e-05	k: 63	n:1990000
Cons ci ratio: 2.321864e-02	ci left: 1.395713e-02	ci right 1.428549e-02	k: 28100	n:1990000
KS ci ratio: 4.685213e-01	ci left: 2.697805e-05	ci right 4.388116e-05	k: 69	n:1990000
FBXW7   1990000 perm   2561 sec   (777 perm/sec)   p_kst 3.467337e-05   p_cons 1.412060e-02   p_joint 3.165829e-05

Joint ci ratio: 4.899920e-01	ci left: 2.420555e-05	ci right 4.030201e-05	k: 63	n:2000000
Cons ci ratio: 2.315479e-02	ci left: 1.396439e-02	ci right 1.429201e-02	k: 28255	n:2000000
KS ci ratio: 4.685213e-01	ci left: 2.684316e-05	ci right 4.366176e-05	k: 69	n:2000000
FBXW7   2000000 perm   2583 sec   (774 perm/sec)   p_kst 3.450000e-05   p_cons 1.412750e-02   p_joint 3.150000e-05

Joint ci ratio: 4.899921e-01	ci left: 2.408512e-05	ci right 4.010150e-05	k: 63	n:2010000
Cons ci ratio: 2.309600e-02	ci left: 1.396615e-02	ci right 1.429297e-02	k: 28399	n:2010000
KS ci ratio: 4.685213e-01	ci left: 2.670961e-05	ci right 4.344454e-05	k: 69	n:2010000
FBXW7   2010000 perm   2605 sec   (772 perm/sec)   p_kst 3.432836e-05   p_cons 1.412886e-02   p_joint 3.134328e-05

Joint ci ratio: 4.899921e-01	ci left: 2.396589e-05	ci right 3.990298e-05	k: 63	n:2020000
Cons ci ratio: 2.303520e-02	ci left: 1.397084e-02	ci right 1.429689e-02	k: 28549	n:2020000
KS ci ratio: 4.685214e-01	ci left: 2.657738e-05	ci right 4.322947e-05	k: 69	n:2020000
FBXW7   2020000 perm   2627 sec   (769 perm/sec)   p_kst 3.415842e-05   p_cons 1.413317e-02   p_joint 3.118812e-05

Joint ci ratio: 4.862083e-01	ci left: 2.427979e-05	ci right 4.025922e-05	k: 64	n:2030000
Cons ci ratio: 2.297325e-02	ci left: 1.397744e-02	ci right 1.430276e-02	k: 28703	n:2030000
KS ci ratio: 4.685214e-01	ci left: 2.644646e-05	ci right 4.301651e-05	k: 69	n:2030000
FBXW7   2030000 perm   2649 sec   (766 perm/sec)   p_kst 3.399015e-05   p_cons 1.413941e-02   p_joint 3.152709e-05

Joint ci ratio: 4.862083e-01	ci left: 2.416077e-05	ci right 4.006187e-05	k: 64	n:2040000
Cons ci ratio: 2.292994e-02	ci left: 1.396205e-02	ci right 1.428639e-02	k: 28812	n:2040000
KS ci ratio: 4.685215e-01	ci left: 2.631682e-05	ci right 4.280565e-05	k: 69	n:2040000
FBXW7   2040000 perm   2671 sec   (764 perm/sec)   p_kst 3.382353e-05   p_cons 1.412353e-02   p_joint 3.137255e-05

Joint ci ratio: 4.825108e-01	ci left: 2.447112e-05	ci right 4.041340e-05	k: 65	n:2050000
Cons ci ratio: 2.287724e-02	ci left: 1.395845e-02	ci right 1.428195e-02	k: 28945	n:2050000
KS ci ratio: 4.652102e-01	ci left: 2.661884e-05	ci right 4.314165e-05	k: 70	n:2050000
FBXW7   2050000 perm   2694 sec   (761 perm/sec)   p_kst 3.414634e-05   p_cons 1.411951e-02   p_joint 3.170732e-05

Joint ci ratio: 4.825108e-01	ci left: 2.435233e-05	ci right 4.021722e-05	k: 65	n:2060000
Cons ci ratio: 2.281576e-02	ci left: 1.396598e-02	ci right 1.428878e-02	k: 29101	n:2060000
KS ci ratio: 4.652103e-01	ci left: 2.648962e-05	ci right 4.293223e-05	k: 70	n:2060000
FBXW7   2060000 perm   2715 sec   (759 perm/sec)   p_kst 3.398058e-05   p_cons 1.412670e-02   p_joint 3.155340e-05

Joint ci ratio: 4.825108e-01	ci left: 2.423468e-05	ci right 4.002294e-05	k: 65	n:2070000
Cons ci ratio: 2.275872e-02	ci left: 1.396865e-02	ci right 1.429069e-02	k: 29247	n:2070000
KS ci ratio: 4.652103e-01	ci left: 2.636165e-05	ci right 4.272483e-05	k: 70	n:2070000
FBXW7   2070000 perm   2738 sec   (756 perm/sec)   p_kst 3.381643e-05   p_cons 1.412899e-02   p_joint 3.140097e-05

Joint ci ratio: 4.825109e-01	ci left: 2.411817e-05	ci right 3.983052e-05	k: 65	n:2080000
Cons ci ratio: 2.270759e-02	ci left: 1.396459e-02	ci right 1.428580e-02	k: 29379	n:2080000
KS ci ratio: 4.652104e-01	ci left: 2.623492e-05	ci right 4.251942e-05	k: 70	n:2080000
FBXW7   2080000 perm   2760 sec   (754 perm/sec)   p_kst 3.365385e-05   p_cons 1.412452e-02   p_joint 3.125000e-05

Joint ci ratio: 4.825109e-01	ci left: 2.400277e-05	ci right 3.963994e-05	k: 65	n:2090000
Cons ci ratio: 2.265914e-02	ci left: 1.395772e-02	ci right 1.427808e-02	k: 29505	n:2090000
KS ci ratio: 4.652104e-01	ci left: 2.610939e-05	ci right 4.231598e-05	k: 70	n:2090000
FBXW7   2090000 perm   2784 sec   (751 perm/sec)   p_kst 3.349282e-05   p_cons 1.411722e-02   p_joint 3.110048e-05

Joint ci ratio: 4.825109e-01	ci left: 2.388847e-05	ci right 3.945118e-05	k: 65	n:2100000
Cons ci ratio: 2.260442e-02	ci left: 1.395896e-02	ci right 1.427857e-02	k: 29648	n:2100000
KS ci ratio: 4.652104e-01	ci left: 2.598506e-05	ci right 4.211448e-05	k: 70	n:2100000
FBXW7   2100000 perm   2806 sec   (748 perm/sec)   p_kst 3.333333e-05   p_cons 1.411810e-02   p_joint 3.095238e-05

Joint ci ratio: 4.825110e-01	ci left: 2.377526e-05	ci right 3.926421e-05	k: 65	n:2110000
Cons ci ratio: 2.255278e-02	ci left: 1.395690e-02	ci right 1.427572e-02	k: 29784	n:2110000
KS ci ratio: 4.652105e-01	ci left: 2.586191e-05	ci right 4.191488e-05	k: 70	n:2110000
FBXW7   2110000 perm   2830 sec   (746 perm/sec)   p_kst 3.317536e-05   p_cons 1.411564e-02   p_joint 3.080569e-05

Joint ci ratio: 4.825110e-01	ci left: 2.366311e-05	ci right 3.907900e-05	k: 65	n:2120000
Cons ci ratio: 2.249196e-02	ci left: 1.396658e-02	ci right 1.428475e-02	k: 29945	n:2120000
KS ci ratio: 4.652105e-01	ci left: 2.573992e-05	ci right 4.171717e-05	k: 70	n:2120000
FBXW7   2120000 perm   2853 sec   (743 perm/sec)   p_kst 3.301887e-05   p_cons 1.412500e-02   p_joint 3.066038e-05

Joint ci ratio: 4.788966e-01	ci left: 2.396458e-05	ci right 3.942152e-05	k: 66	n:2130000
Cons ci ratio: 2.243996e-02	ci left: 1.396590e-02	ci right 1.428331e-02	k: 30084	n:2130000
KS ci ratio: 4.619685e-01	ci left: 2.603370e-05	ci right 4.204528e-05	k: 71	n:2130000
FBXW7   2130000 perm   2876 sec   (741 perm/sec)   p_kst 3.333333e-05   p_cons 1.412394e-02   p_joint 3.098592e-05

Joint ci ratio: 4.788966e-01	ci left: 2.385260e-05	ci right 3.923730e-05	k: 66	n:2140000
Cons ci ratio: 2.239620e-02	ci left: 1.395547e-02	ci right 1.427202e-02	k: 30202	n:2140000
KS ci ratio: 4.619686e-01	ci left: 2.591205e-05	ci right 4.184881e-05	k: 71	n:2140000
FBXW7   2140000 perm   2899 sec   (738 perm/sec)   p_kst 3.317757e-05   p_cons 1.411308e-02   p_joint 3.084112e-05

Joint ci ratio: 4.753622e-01	ci left: 2.415081e-05	ci right 3.957548e-05	k: 67	n:2150000
Cons ci ratio: 2.233627e-02	ci left: 1.396549e-02	ci right 1.428140e-02	k: 30364	n:2150000
KS ci ratio: 4.619686e-01	ci left: 2.579152e-05	ci right 4.165416e-05	k: 71	n:2150000
FBXW7   2150000 perm   2922 sec   (736 perm/sec)   p_kst 3.302326e-05   p_cons 1.412279e-02   p_joint 3.116279e-05

Joint ci ratio: 4.753622e-01	ci left: 2.403900e-05	ci right 3.939226e-05	k: 67	n:2160000
Cons ci ratio: 2.228015e-02	ci left: 1.397127e-02	ci right 1.428651e-02	k: 30517	n:2160000
KS ci ratio: 4.619686e-01	ci left: 2.567212e-05	ci right 4.146132e-05	k: 71	n:2160000
FBXW7   2160000 perm   2946 sec   (733 perm/sec)   p_kst 3.287037e-05   p_cons 1.412824e-02   p_joint 3.101852e-05

Joint ci ratio: 4.753623e-01	ci left: 2.392822e-05	ci right 3.921073e-05	k: 67	n:2170000
Cons ci ratio: 2.222408e-02	ci left: 1.397746e-02	ci right 1.429204e-02	k: 30671	n:2170000
KS ci ratio: 4.619687e-01	ci left: 2.555381e-05	ci right 4.127026e-05	k: 71	n:2170000
FBXW7   2170000 perm   2970 sec   (731 perm/sec)   p_kst 3.271889e-05   p_cons 1.413410e-02   p_joint 3.087558e-05

Joint ci ratio: 4.788968e-01	ci left: 2.341494e-05	ci right 3.851736e-05	k: 66	n:2180000
Cons ci ratio: 2.217573e-02	ci left: 1.397447e-02	ci right 1.428829e-02	k: 30805	n:2180000
KS ci ratio: 4.587935e-01	ci left: 2.584209e-05	ci right 4.159252e-05	k: 72	n:2180000
FBXW7   2180000 perm   2994 sec   (728 perm/sec)   p_kst 3.302752e-05   p_cons 1.413073e-02   p_joint 3.027523e-05

Joint ci ratio: 4.788968e-01	ci left: 2.330802e-05	ci right 3.834148e-05	k: 66	n:2190000
Cons ci ratio: 2.212479e-02	ci left: 1.397514e-02	ci right 1.428825e-02	k: 30947	n:2190000
KS ci ratio: 4.587935e-01	ci left: 2.572409e-05	ci right 4.140260e-05	k: 72	n:2190000
FBXW7   2190000 perm   3018 sec   (726 perm/sec)   p_kst 3.287671e-05   p_cons 1.413105e-02   p_joint 3.013699e-05

Joint ci ratio: 4.788968e-01	ci left: 2.320207e-05	ci right 3.816720e-05	k: 66	n:2200000
Cons ci ratio: 2.207456e-02	ci left: 1.397536e-02	ci right 1.428774e-02	k: 31088	n:2200000
KS ci ratio: 4.587936e-01	ci left: 2.560716e-05	ci right 4.121441e-05	k: 72	n:2200000
FBXW7   2200000 perm   3042 sec   (723 perm/sec)   p_kst 3.272727e-05   p_cons 1.413091e-02   p_joint 3.000000e-05

Joint ci ratio: 4.753624e-01	ci left: 2.349513e-05	ci right 3.850103e-05	k: 67	n:2210000
Cons ci ratio: 2.202217e-02	ci left: 1.397872e-02	ci right 1.429043e-02	k: 31236	n:2210000
KS ci ratio: 4.587936e-01	ci left: 2.549129e-05	ci right 4.102792e-05	k: 72	n:2210000
FBXW7   2210000 perm   3066 sec   (721 perm/sec)   p_kst 3.257919e-05   p_cons 1.413394e-02   p_joint 3.031674e-05

Joint ci ratio: 4.753624e-01	ci left: 2.338930e-05	ci right 3.832761e-05	k: 67	n:2220000
Cons ci ratio: 2.197406e-02	ci left: 1.397712e-02	ci right 1.428811e-02	k: 31373	n:2220000
KS ci ratio: 4.587937e-01	ci left: 2.537646e-05	ci right 4.084311e-05	k: 72	n:2220000
FBXW7   2220000 perm   3090 sec   (718 perm/sec)   p_kst 3.243243e-05   p_cons 1.413198e-02   p_joint 3.018018e-05

Joint ci ratio: 4.719051e-01	ci left: 2.367930e-05	ci right 3.865733e-05	k: 68	n:2230000
Cons ci ratio: 2.192309e-02	ci left: 1.397956e-02	ci right 1.428987e-02	k: 31519	n:2230000
KS ci ratio: 4.556831e-01	ci left: 2.565943e-05	ci right 4.115971e-05	k: 73	n:2230000
FBXW7   2230000 perm   3114 sec   (716 perm/sec)   p_kst 3.273543e-05   p_cons 1.413408e-02   p_joint 3.049327e-05

Joint ci ratio: 4.685222e-01	ci left: 2.396709e-05	ci right 3.898373e-05	k: 69	n:2240000
Cons ci ratio: 2.187352e-02	ci left: 1.398064e-02	ci right 1.429026e-02	k: 31662	n:2240000
KS ci ratio: 4.526349e-01	ci left: 2.594023e-05	ci right 4.147314e-05	k: 74	n:2240000
FBXW7   2240000 perm   3137 sec   (714 perm/sec)   p_kst 3.303571e-05   p_cons 1.413482e-02   p_joint 3.080357e-05

Joint ci ratio: 4.685222e-01	ci left: 2.386057e-05	ci right 3.881047e-05	k: 69	n:2250000
Cons ci ratio: 2.182219e-02	ci left: 1.398436e-02	ci right 1.429333e-02	k: 31811	n:2250000
KS ci ratio: 4.526350e-01	ci left: 2.582494e-05	ci right 4.128881e-05	k: 74	n:2250000
FBXW7   2250000 perm   3161 sec   (712 perm/sec)   p_kst 3.288889e-05   p_cons 1.413822e-02   p_joint 3.066667e-05

Joint ci ratio: 4.652110e-01	ci left: 2.414540e-05	ci right 3.913293e-05	k: 70	n:2260000
Cons ci ratio: 2.177849e-02	ci left: 1.397881e-02	ci right 1.428704e-02	k: 31939	n:2260000
KS ci ratio: 4.467178e-01	ci left: 2.649538e-05	ci right 4.209068e-05	k: 76	n:2260000
FBXW7   2260000 perm   3185 sec   (710 perm/sec)   p_kst 3.362832e-05   p_cons 1.413230e-02   p_joint 3.097345e-05

Joint ci ratio: 4.652110e-01	ci left: 2.403903e-05	ci right 3.896054e-05	k: 70	n:2270000
Cons ci ratio: 2.172783e-02	ci left: 1.398251e-02	ci right 1.429009e-02	k: 32088	n:2270000
KS ci ratio: 4.467178e-01	ci left: 2.637866e-05	ci right 4.190526e-05	k: 76	n:2270000
FBXW7   2270000 perm   3209 sec   (707 perm/sec)   p_kst 3.348018e-05   p_cons 1.413568e-02   p_joint 3.083700e-05

Joint ci ratio: 4.652111e-01	ci left: 2.393360e-05	ci right 3.878966e-05	k: 70	n:2280000
Cons ci ratio: 2.167923e-02	ci left: 1.398400e-02	ci right 1.429092e-02	k: 32232	n:2280000
KS ci ratio: 4.467178e-01	ci left: 2.626296e-05	ci right 4.172146e-05	k: 76	n:2280000
FBXW7   2280000 perm   3233 sec   (705 perm/sec)   p_kst 3.333333e-05   p_cons 1.413684e-02   p_joint 3.070175e-05

Joint ci ratio: 4.652111e-01	ci left: 2.382909e-05	ci right 3.862028e-05	k: 70	n:2290000
Cons ci ratio: 2.163332e-02	ci left: 1.398244e-02	ci right 1.428866e-02	k: 32369	n:2290000
KS ci ratio: 4.467179e-01	ci left: 2.614828e-05	ci right 4.153927e-05	k: 76	n:2290000
FBXW7   2290000 perm   3257 sec   (703 perm/sec)   p_kst 3.318777e-05   p_cons 1.413493e-02   p_joint 3.056769e-05

Joint ci ratio: 4.652111e-01	ci left: 2.372548e-05	ci right 3.845236e-05	k: 70	n:2300000
Cons ci ratio: 2.158165e-02	ci left: 1.398867e-02	ci right 1.429429e-02	k: 32524	n:2300000
KS ci ratio: 4.467179e-01	ci left: 2.603459e-05	ci right 4.135867e-05	k: 76	n:2300000
FBXW7   2300000 perm   3282 sec   (701 perm/sec)   p_kst 3.304348e-05   p_cons 1.414087e-02   p_joint 3.043478e-05

Joint ci ratio: 4.825116e-01	ci left: 2.171679e-05	ci right 3.586473e-05	k: 65	n:2310000
Cons ci ratio: 2.153001e-02	ci left: 1.399528e-02	ci right 1.430031e-02	k: 32680	n:2310000
KS ci ratio: 4.467179e-01	ci left: 2.592188e-05	ci right 4.117963e-05	k: 76	n:2310000
FBXW7   2310000 perm   3306 sec   (699 perm/sec)   p_kst 3.290043e-05   p_cons 1.414719e-02   p_joint 2.813853e-05

Joint ci ratio: 4.899931e-01	ci left: 2.086684e-05	ci right 3.474313e-05	k: 63	n:2320000
Cons ci ratio: 2.148272e-02	ci left: 1.399670e-02	ci right 1.430107e-02	k: 32824	n:2320000
KS ci ratio: 4.467180e-01	ci left: 2.581015e-05	ci right 4.100213e-05	k: 76	n:2320000
FBXW7   2320000 perm   3331 sec   (697 perm/sec)   p_kst 3.275862e-05   p_cons 1.414828e-02   p_joint 2.715517e-05

Joint ci ratio: 4.899932e-01	ci left: 2.077728e-05	ci right 3.459402e-05	k: 63	n:2330000
Cons ci ratio: 2.143904e-02	ci left: 1.399383e-02	ci right 1.429751e-02	k: 32958	n:2330000
KS ci ratio: 4.467180e-01	ci left: 2.569938e-05	ci right 4.082616e-05	k: 76	n:2330000
FBXW7   2330000 perm   3356 sec   (694 perm/sec)   p_kst 3.261803e-05   p_cons 1.414506e-02   p_joint 2.703863e-05

Joint ci ratio: 4.899932e-01	ci left: 2.068849e-05	ci right 3.444618e-05	k: 63	n:2340000
Cons ci ratio: 2.139005e-02	ci left: 1.399821e-02	ci right 1.430129e-02	k: 33109	n:2340000
KS ci ratio: 4.438451e-01	ci left: 2.596897e-05	ci right 4.112666e-05	k: 77	n:2340000
FBXW7   2340000 perm   3380 sec   (692 perm/sec)   p_kst 3.290598e-05   p_cons 1.414915e-02   p_joint 2.692308e-05

Joint ci ratio: 4.899932e-01	ci left: 2.060046e-05	ci right 3.429960e-05	k: 63	n:2350000
Cons ci ratio: 2.134759e-02	ci left: 1.399451e-02	ci right 1.429690e-02	k: 33241	n:2350000
KS ci ratio: 4.438451e-01	ci left: 2.585847e-05	ci right 4.095166e-05	k: 77	n:2350000
FBXW7   2350000 perm   3404 sec   (690 perm/sec)   p_kst 3.276596e-05   p_cons 1.414511e-02   p_joint 2.680851e-05

Joint ci ratio: 4.899933e-01	ci left: 2.051316e-05	ci right 3.415427e-05	k: 63	n:2360000
Cons ci ratio: 2.130214e-02	ci left: 1.399506e-02	ci right 1.429681e-02	k: 33383	n:2360000
KS ci ratio: 4.438452e-01	ci left: 2.574889e-05	ci right 4.077813e-05	k: 77	n:2360000
FBXW7   2360000 perm   3429 sec   (688 perm/sec)   p_kst 3.262712e-05   p_cons 1.414534e-02   p_joint 2.669492e-05

Joint ci ratio: 4.899933e-01	ci left: 2.042661e-05	ci right 3.401016e-05	k: 63	n:2370000
Cons ci ratio: 2.126212e-02	ci left: 1.398889e-02	ci right 1.428993e-02	k: 33509	n:2370000
KS ci ratio: 4.438452e-01	ci left: 2.564025e-05	ci right 4.060608e-05	k: 77	n:2370000
FBXW7   2370000 perm   3455 sec   (686 perm/sec)   p_kst 3.248945e-05   p_cons 1.413882e-02   p_joint 2.658228e-05

Joint ci ratio: 4.899933e-01	ci left: 2.034078e-05	ci right 3.386726e-05	k: 63	n:2380000
Cons ci ratio: 2.121881e-02	ci left: 1.398737e-02	ci right 1.428776e-02	k: 33646	n:2380000
KS ci ratio: 4.438452e-01	ci left: 2.553252e-05	ci right 4.043546e-05	k: 77	n:2380000
FBXW7   2380000 perm   3480 sec   (684 perm/sec)   p_kst 3.235294e-05   p_cons 1.413697e-02   p_joint 2.647059e-05

Joint ci ratio: 4.899933e-01	ci left: 2.025568e-05	ci right 3.372555e-05	k: 63	n:2390000
Cons ci ratio: 2.117608e-02	ci left: 1.398545e-02	ci right 1.428519e-02	k: 33782	n:2390000
KS ci ratio: 4.438453e-01	ci left: 2.542569e-05	ci right 4.026628e-05	k: 77	n:2390000
FBXW7   2390000 perm   3506 sec   (682 perm/sec)   p_kst 3.221757e-05   p_cons 1.413473e-02   p_joint 2.635983e-05

Joint ci ratio: 4.899934e-01	ci left: 2.017128e-05	ci right 3.358503e-05	k: 63	n:2400000
Cons ci ratio: 2.113234e-02	ci left: 1.398520e-02	ci right 1.428431e-02	k: 33922	n:2400000
KS ci ratio: 4.438453e-01	ci left: 2.531975e-05	ci right 4.009850e-05	k: 77	n:2400000
FBXW7   2400000 perm   3531 sec   (680 perm/sec)   p_kst 3.208333e-05   p_cons 1.413417e-02   p_joint 2.625000e-05

Joint ci ratio: 4.899934e-01	ci left: 2.008758e-05	ci right 3.344567e-05	k: 63	n:2410000
Cons ci ratio: 2.109045e-02	ci left: 1.398289e-02	ci right 1.428135e-02	k: 34057	n:2410000
KS ci ratio: 4.438453e-01	ci left: 2.521468e-05	ci right 3.993212e-05	k: 77	n:2410000
FBXW7   2410000 perm   3556 sec   (678 perm/sec)   p_kst 3.195021e-05   p_cons 1.413154e-02   p_joint 2.614108e-05

Joint ci ratio: 4.899934e-01	ci left: 2.000457e-05	ci right 3.330747e-05	k: 63	n:2420000
Cons ci ratio: 2.105005e-02	ci left: 1.397896e-02	ci right 1.427675e-02	k: 34188	n:2420000
KS ci ratio: 4.438454e-01	ci left: 2.511049e-05	ci right 3.976711e-05	k: 77	n:2420000
FBXW7   2420000 perm   3582 sec   (676 perm/sec)   p_kst 3.181818e-05   p_cons 1.412727e-02   p_joint 2.603306e-05

Joint ci ratio: 4.899934e-01	ci left: 1.992225e-05	ci right 3.317040e-05	k: 63	n:2430000
Cons ci ratio: 2.100709e-02	ci left: 1.397874e-02	ci right 1.427592e-02	k: 34328	n:2430000
KS ci ratio: 4.438454e-01	ci left: 2.500715e-05	ci right 3.960346e-05	k: 77	n:2430000
FBXW7   2430000 perm   3608 sec   (674 perm/sec)   p_kst 3.168724e-05   p_cons 1.412675e-02   p_joint 2.592593e-05

Joint ci ratio: 4.899935e-01	ci left: 1.984060e-05	ci right 3.303446e-05	k: 63	n:2440000
Cons ci ratio: 2.096100e-02	ci left: 1.398301e-02	ci right 1.427962e-02	k: 34479	n:2440000
KS ci ratio: 4.438454e-01	ci left: 2.490467e-05	ci right 3.944115e-05	k: 77	n:2440000
FBXW7   2440000 perm   3633 sec   (672 perm/sec)   p_kst 3.155738e-05   p_cons 1.413074e-02   p_joint 2.581967e-05

Joint ci ratio: 4.862096e-01	ci left: 2.011753e-05	ci right 3.335766e-05	k: 64	n:2450000
Cons ci ratio: 2.092134e-02	ci left: 1.397913e-02	ci right 1.427508e-02	k: 34610	n:2450000
KS ci ratio: 4.382621e-01	ci left: 2.552867e-05	ci right 4.018660e-05	k: 79	n:2450000
FBXW7   2450000 perm   3659 sec   (670 perm/sec)   p_kst 3.224490e-05   p_cons 1.412653e-02   p_joint 2.612245e-05

Joint ci ratio: 4.862096e-01	ci left: 2.003575e-05	ci right 3.322206e-05	k: 64	n:2460000
Cons ci ratio: 2.087702e-02	ci left: 1.398175e-02	ci right 1.427712e-02	k: 34757	n:2460000
KS ci ratio: 4.382621e-01	ci left: 2.542489e-05	ci right 4.002324e-05	k: 79	n:2460000
FBXW7   2460000 perm   3685 sec   (668 perm/sec)   p_kst 3.211382e-05   p_cons 1.412886e-02   p_joint 2.601626e-05

Joint ci ratio: 4.862097e-01	ci left: 1.995463e-05	ci right 3.308756e-05	k: 64	n:2470000
Cons ci ratio: 2.083753e-02	ci left: 1.397830e-02	ci right 1.427304e-02	k: 34889	n:2470000
KS ci ratio: 4.382621e-01	ci left: 2.532196e-05	ci right 3.986121e-05	k: 79	n:2470000
FBXW7   2470000 perm   3710 sec   (666 perm/sec)   p_kst 3.198381e-05   p_cons 1.412510e-02   p_joint 2.591093e-05

Joint ci ratio: 4.862097e-01	ci left: 1.987417e-05	ci right 3.295414e-05	k: 64	n:2480000
Cons ci ratio: 2.079797e-02	ci left: 1.397529e-02	ci right 1.426940e-02	k: 35022	n:2480000
KS ci ratio: 4.382622e-01	ci left: 2.521985e-05	ci right 3.970048e-05	k: 79	n:2480000
FBXW7   2480000 perm   3736 sec   (664 perm/sec)   p_kst 3.185484e-05   p_cons 1.412177e-02   p_joint 2.580645e-05

Joint ci ratio: 4.862097e-01	ci left: 1.979435e-05	ci right 3.282180e-05	k: 64	n:2490000
Cons ci ratio: 2.075024e-02	ci left: 1.398349e-02	ci right 1.427708e-02	k: 35183	n:2490000
KS ci ratio: 4.382622e-01	ci left: 2.511857e-05	ci right 3.954104e-05	k: 79	n:2490000
FBXW7   2490000 perm   3763 sec   (662 perm/sec)   p_kst 3.172691e-05   p_cons 1.412972e-02   p_joint 2.570281e-05

Joint ci ratio: 4.862097e-01	ci left: 1.971517e-05	ci right 3.269051e-05	k: 64	n:2500000
Cons ci ratio: 2.071652e-02	ci left: 1.397331e-02	ci right 1.426621e-02	k: 35298	n:2500000
KS ci ratio: 4.382622e-01	ci left: 2.501809e-05	ci right 3.938288e-05	k: 79	n:2500000
FBXW7   2500000 perm   3788 sec   (660 perm/sec)   p_kst 3.160000e-05   p_cons 1.411920e-02   p_joint 2.560000e-05

Joint ci ratio: 4.862098e-01	ci left: 1.963663e-05	ci right 3.256027e-05	k: 64	n:2510000
Cons ci ratio: 2.067705e-02	ci left: 1.397115e-02	ci right 1.426344e-02	k: 35433	n:2510000
KS ci ratio: 4.382623e-01	ci left: 2.491842e-05	ci right 3.922597e-05	k: 79	n:2510000
FBXW7   2510000 perm   3814 sec   (658 perm/sec)   p_kst 3.147410e-05   p_cons 1.411673e-02   p_joint 2.549801e-05

Joint ci ratio: 4.862098e-01	ci left: 1.955870e-05	ci right 3.243106e-05	k: 64	n:2520000
Cons ci ratio: 2.063780e-02	ci left: 1.396900e-02	ci right 1.426069e-02	k: 35568	n:2520000
KS ci ratio: 4.382623e-01	ci left: 2.481954e-05	ci right 3.907031e-05	k: 79	n:2520000
FBXW7   2520000 perm   3840 sec   (656 perm/sec)   p_kst 3.134921e-05   p_cons 1.411429e-02   p_joint 2.539683e-05

Joint ci ratio: 4.862098e-01	ci left: 1.948140e-05	ci right 3.230288e-05	k: 64	n:2530000
Cons ci ratio: 2.059877e-02	ci left: 1.396687e-02	ci right 1.425796e-02	k: 35703	n:2530000
KS ci ratio: 4.382623e-01	ci left: 2.472144e-05	ci right 3.891589e-05	k: 79	n:2530000
FBXW7   2530000 perm   3866 sec   (654 perm/sec)   p_kst 3.122530e-05   p_cons 1.411186e-02   p_joint 2.529644e-05

Joint ci ratio: 4.862098e-01	ci left: 1.940470e-05	ci right 3.217570e-05	k: 64	n:2540000
Cons ci ratio: 2.055763e-02	ci left: 1.396790e-02	ci right 1.425841e-02	k: 35846	n:2540000
KS ci ratio: 4.382623e-01	ci left: 2.462411e-05	ci right 3.876267e-05	k: 79	n:2540000
FBXW7   2540000 perm   3893 sec   (653 perm/sec)   p_kst 3.110236e-05   p_cons 1.411260e-02   p_joint 2.519685e-05

Joint ci ratio: 4.862099e-01	ci left: 1.932860e-05	ci right 3.204952e-05	k: 64	n:2550000
Cons ci ratio: 2.051530e-02	ci left: 1.397086e-02	ci right 1.426083e-02	k: 35994	n:2550000
KS ci ratio: 4.382624e-01	ci left: 2.452754e-05	ci right 3.861066e-05	k: 79	n:2550000
FBXW7   2550000 perm   3919 sec   (651 perm/sec)   p_kst 3.098039e-05   p_cons 1.411529e-02   p_joint 2.509804e-05

Joint ci ratio: 4.862099e-01	ci left: 1.925310e-05	ci right 3.192433e-05	k: 64	n:2560000
Cons ci ratio: 2.047380e-02	ci left: 1.397303e-02	ci right 1.426245e-02	k: 36140	n:2560000
KS ci ratio: 4.382624e-01	ci left: 2.443173e-05	ci right 3.845984e-05	k: 79	n:2560000
FBXW7   2560000 perm   3946 sec   (649 perm/sec)   p_kst 3.085938e-05   p_cons 1.411719e-02   p_joint 2.500000e-05

Joint ci ratio: 4.862099e-01	ci left: 1.917818e-05	ci right 3.180011e-05	k: 64	n:2570000
Cons ci ratio: 2.043455e-02	ci left: 1.397247e-02	ci right 1.426132e-02	k: 36279	n:2570000
KS ci ratio: 4.382624e-01	ci left: 2.433667e-05	ci right 3.831019e-05	k: 79	n:2570000
FBXW7   2570000 perm   3973 sec   (647 perm/sec)   p_kst 3.073930e-05   p_cons 1.411634e-02   p_joint 2.490272e-05

Joint ci ratio: 4.862099e-01	ci left: 1.910385e-05	ci right 3.167686e-05	k: 64	n:2580000
Cons ci ratio: 2.039581e-02	ci left: 1.397152e-02	ci right 1.425980e-02	k: 36417	n:2580000
KS ci ratio: 4.382624e-01	ci left: 2.424234e-05	ci right 3.816171e-05	k: 79	n:2580000
FBXW7   2580000 perm   4000 sec   (645 perm/sec)   p_kst 3.062016e-05   p_cons 1.411512e-02   p_joint 2.480620e-05

Joint ci ratio: 4.825124e-01	ci left: 1.936902e-05	ci right 3.198747e-05	k: 65	n:2590000
Cons ci ratio: 2.035503e-02	ci left: 1.397366e-02	ci right 1.426140e-02	k: 36563	n:2590000
KS ci ratio: 4.382625e-01	ci left: 2.414874e-05	ci right 3.801436e-05	k: 79	n:2590000
FBXW7   2590000 perm   4026 sec   (643 perm/sec)   p_kst 3.050193e-05   p_cons 1.411699e-02   p_joint 2.509653e-05

Joint ci ratio: 4.825124e-01	ci left: 1.929452e-05	ci right 3.186444e-05	k: 65	n:2600000
Cons ci ratio: 2.032011e-02	ci left: 1.396813e-02	ci right 1.425526e-02	k: 36689	n:2600000
KS ci ratio: 4.382625e-01	ci left: 2.405586e-05	ci right 3.786815e-05	k: 79	n:2600000
FBXW7   2600000 perm   4053 sec   (641 perm/sec)   p_kst 3.038462e-05   p_cons 1.411115e-02   p_joint 2.500000e-05

Joint ci ratio: 4.825125e-01	ci left: 1.922060e-05	ci right 3.174236e-05	k: 65	n:2610000
Cons ci ratio: 2.027671e-02	ci left: 1.397446e-02	ci right 1.426110e-02	k: 36846	n:2610000
KS ci ratio: 4.382625e-01	ci left: 2.396369e-05	ci right 3.772307e-05	k: 79	n:2610000
FBXW7   2610000 perm   4081 sec   (640 perm/sec)   p_kst 3.026820e-05   p_cons 1.411724e-02   p_joint 2.490421e-05

Joint ci ratio: 4.825125e-01	ci left: 1.914724e-05	ci right 3.162120e-05	k: 65	n:2620000
Cons ci ratio: 2.024163e-02	ci left: 1.396973e-02	ci right 1.425577e-02	k: 36974	n:2620000
KS ci ratio: 4.382625e-01	ci left: 2.387222e-05	ci right 3.757909e-05	k: 79	n:2620000
FBXW7   2620000 perm   4108 sec   (638 perm/sec)   p_kst 3.015267e-05   p_cons 1.411221e-02   p_joint 2.480916e-05

Joint ci ratio: 4.788980e-01	ci left: 1.940857e-05	ci right 3.192696e-05	k: 66	n:2630000
Cons ci ratio: 2.019846e-02	ci left: 1.397639e-02	ci right 1.426194e-02	k: 37132	n:2630000
KS ci ratio: 4.382626e-01	ci left: 2.378146e-05	ci right 3.743620e-05	k: 79	n:2630000
FBXW7   2630000 perm   4135 sec   (636 perm/sec)   p_kst 3.003802e-05   p_cons 1.411863e-02   p_joint 2.509506e-05

Joint ci ratio: 4.788981e-01	ci left: 1.933505e-05	ci right 3.180602e-05	k: 66	n:2640000
Cons ci ratio: 2.015830e-02	ci left: 1.397923e-02	ci right 1.426426e-02	k: 37280	n:2640000
KS ci ratio: 4.355488e-01	ci left: 2.402849e-05	ci right 3.771460e-05	k: 80	n:2640000
FBXW7   2640000 perm   4162 sec   (634 perm/sec)   p_kst 3.030303e-05   p_cons 1.412121e-02   p_joint 2.500000e-05

Joint ci ratio: 4.788981e-01	ci left: 1.926209e-05	ci right 3.168600e-05	k: 66	n:2650000
Cons ci ratio: 2.011865e-02	ci left: 1.398167e-02	ci right 1.426619e-02	k: 37427	n:2650000
KS ci ratio: 4.355488e-01	ci left: 2.393782e-05	ci right 3.757229e-05	k: 80	n:2650000
FBXW7   2650000 perm   4190 sec   (633 perm/sec)   p_kst 3.018868e-05   p_cons 1.412340e-02   p_joint 2.490566e-05

Joint ci ratio: 4.788981e-01	ci left: 1.918967e-05	ci right 3.156688e-05	k: 66	n:2660000
Cons ci ratio: 2.008303e-02	ci left: 1.397885e-02	ci right 1.426281e-02	k: 37560	n:2660000
KS ci ratio: 4.328848e-01	ci left: 2.418266e-05	ci right 3.784783e-05	k: 81	n:2660000
FBXW7   2660000 perm   4217 sec   (631 perm/sec)   p_kst 3.045113e-05   p_cons 1.412030e-02   p_joint 2.481203e-05

Joint ci ratio: 4.788981e-01	ci left: 1.911780e-05	ci right 3.144865e-05	k: 66	n:2670000
Cons ci ratio: 2.004410e-02	ci left: 1.398091e-02	ci right 1.426434e-02	k: 37706	n:2670000
KS ci ratio: 4.302691e-01	ci left: 2.442593e-05	ci right 3.812107e-05	k: 82	n:2670000
FBXW7   2670000 perm   4246 sec   (629 perm/sec)   p_kst 3.071161e-05   p_cons 1.412210e-02   p_joint 2.471910e-05

Joint ci ratio: 4.788981e-01	ci left: 1.904647e-05	ci right 3.133131e-05	k: 66	n:2680000
Cons ci ratio: 2.000968e-02	ci left: 1.397700e-02	ci right 1.425987e-02	k: 37836	n:2680000
KS ci ratio: 4.302692e-01	ci left: 2.433479e-05	ci right 3.797882e-05	k: 82	n:2680000
FBXW7   2680000 perm   4273 sec   (627 perm/sec)   p_kst 3.059701e-05   p_cons 1.411791e-02   p_joint 2.462687e-05

Joint ci ratio: 4.788982e-01	ci left: 1.897566e-05	ci right 3.121483e-05	k: 66	n:2690000
Cons ci ratio: 1.997223e-02	ci left: 1.397757e-02	ci right 1.425991e-02	k: 37978	n:2690000
KS ci ratio: 4.302692e-01	ci left: 2.424432e-05	ci right 3.783764e-05	k: 82	n:2690000
FBXW7   2690000 perm   4301 sec   (625 perm/sec)   p_kst 3.048327e-05   p_cons 1.411822e-02   p_joint 2.453532e-05

Joint ci ratio: 4.788982e-01	ci left: 1.890538e-05	ci right 3.109922e-05	k: 66	n:2700000
Cons ci ratio: 1.993791e-02	ci left: 1.397407e-02	ci right 1.425586e-02	k: 38109	n:2700000
KS ci ratio: 4.302692e-01	ci left: 2.415453e-05	ci right 3.769750e-05	k: 82	n:2700000
FBXW7   2700000 perm   4329 sec   (624 perm/sec)   p_kst 3.037037e-05   p_cons 1.411444e-02   p_joint 2.444444e-05

Joint ci ratio: 4.788982e-01	ci left: 1.883562e-05	ci right 3.098447e-05	k: 66	n:2710000
Cons ci ratio: 1.990430e-02	ci left: 1.396987e-02	ci right 1.425109e-02	k: 38238	n:2710000
KS ci ratio: 4.302692e-01	ci left: 2.406540e-05	ci right 3.755839e-05	k: 82	n:2710000
FBXW7   2710000 perm   4357 sec   (622 perm/sec)   p_kst 3.025830e-05   p_cons 1.410996e-02   p_joint 2.435424e-05

Joint ci ratio: 4.788982e-01	ci left: 1.876637e-05	ci right 3.087055e-05	k: 66	n:2720000
Cons ci ratio: 1.987138e-02	ci left: 1.396497e-02	ci right 1.424562e-02	k: 38365	n:2720000
KS ci ratio: 4.302693e-01	ci left: 2.397692e-05	ci right 3.742031e-05	k: 82	n:2720000
FBXW7   2720000 perm   4384 sec   (620 perm/sec)   p_kst 3.014706e-05   p_cons 1.410478e-02   p_joint 2.426471e-05

Joint ci ratio: 4.788983e-01	ci left: 1.869763e-05	ci right 3.075747e-05	k: 66	n:2730000
Cons ci ratio: 1.983601e-02	ci left: 1.396375e-02	ci right 1.424387e-02	k: 38502	n:2730000
KS ci ratio: 4.277004e-01	ci left: 2.421583e-05	ci right 3.768887e-05	k: 83	n:2730000
FBXW7   2730000 perm   4412 sec   (619 perm/sec)   p_kst 3.040293e-05   p_cons 1.410330e-02   p_joint 2.417582e-05

Joint ci ratio: 4.753638e-01	ci left: 1.895044e-05	ci right 3.105378e-05	k: 67	n:2740000
Cons ci ratio: 1.979719e-02	ci left: 1.396763e-02	ci right 1.424727e-02	k: 38653	n:2740000
KS ci ratio: 4.251770e-01	ci left: 2.445324e-05	ci right 3.795523e-05	k: 84	n:2740000
FBXW7   2740000 perm   4441 sec   (617 perm/sec)   p_kst 3.065693e-05   p_cons 1.410693e-02   p_joint 2.445255e-05

Joint ci ratio: 4.753639e-01	ci left: 1.888153e-05	ci right 3.094086e-05	k: 67	n:2750000
Cons ci ratio: 1.976377e-02	ci left: 1.396424e-02	ci right 1.424333e-02	k: 38784	n:2750000
KS ci ratio: 4.251770e-01	ci left: 2.436432e-05	ci right 3.781721e-05	k: 84	n:2750000
FBXW7   2750000 perm   4470 sec   (615 perm/sec)   p_kst 3.054545e-05   p_cons 1.410327e-02   p_joint 2.436364e-05

Joint ci ratio: 4.753639e-01	ci left: 1.881312e-05	ci right 3.082875e-05	k: 67	n:2760000
Cons ci ratio: 1.972948e-02	ci left: 1.396231e-02	ci right 1.424088e-02	k: 38919	n:2760000
KS ci ratio: 4.251771e-01	ci left: 2.427604e-05	ci right 3.768020e-05	k: 84	n:2760000
FBXW7   2760000 perm   4498 sec   (614 perm/sec)   p_kst 3.043478e-05   p_cons 1.410109e-02   p_joint 2.427536e-05

Joint ci ratio: 4.753639e-01	ci left: 1.874520e-05	ci right 3.071746e-05	k: 67	n:2770000
Cons ci ratio: 1.969845e-02	ci left: 1.395609e-02	ci right 1.423409e-02	k: 39042	n:2770000
KS ci ratio: 4.226978e-01	ci left: 2.451089e-05	ci right 3.794348e-05	k: 85	n:2770000
FBXW7   2770000 perm   4527 sec   (612 perm/sec)   p_kst 3.068592e-05   p_cons 1.409458e-02   p_joint 2.418773e-05

Joint ci ratio: 4.719066e-01	ci left: 1.899453e-05	ci right 3.100932e-05	k: 68	n:2780000
Cons ci ratio: 1.966221e-02	ci left: 1.395743e-02	ci right 1.423495e-02	k: 39186	n:2780000
KS ci ratio: 4.202615e-01	ci left: 2.474428e-05	ci right 3.820465e-05	k: 86	n:2780000
FBXW7   2780000 perm   4556 sec   (610 perm/sec)   p_kst 3.093525e-05   p_cons 1.409568e-02   p_joint 2.446043e-05

Joint ci ratio: 4.719066e-01	ci left: 1.892645e-05	ci right 3.089818e-05	k: 68	n:2790000
Cons ci ratio: 1.963250e-02	ci left: 1.394985e-02	ci right 1.422679e-02	k: 39305	n:2790000
KS ci ratio: 4.202615e-01	ci left: 2.465559e-05	ci right 3.806771e-05	k: 86	n:2790000
FBXW7   2790000 perm   4585 sec   (609 perm/sec)   p_kst 3.082437e-05   p_cons 1.408781e-02   p_joint 2.437276e-05

Joint ci ratio: 4.719066e-01	ci left: 1.885886e-05	ci right 3.078783e-05	k: 68	n:2800000
Cons ci ratio: 1.959788e-02	ci left: 1.394943e-02	ci right 1.422586e-02	k: 39444	n:2800000
KS ci ratio: 4.202615e-01	ci left: 2.456754e-05	ci right 3.793176e-05	k: 86	n:2800000
FBXW7   2800000 perm   4614 sec   (607 perm/sec)   p_kst 3.071429e-05   p_cons 1.408714e-02   p_joint 2.428571e-05

Joint ci ratio: 4.719067e-01	ci left: 1.879174e-05	ci right 3.067826e-05	k: 68	n:2810000
Cons ci ratio: 1.956044e-02	ci left: 1.395326e-02	ci right 1.422924e-02	k: 39595	n:2810000
KS ci ratio: 4.202615e-01	ci left: 2.448011e-05	ci right 3.779677e-05	k: 86	n:2810000
FBXW7   2810000 perm   4643 sec   (605 perm/sec)   p_kst 3.060498e-05   p_cons 1.409075e-02   p_joint 2.419929e-05

Joint ci ratio: 4.719067e-01	ci left: 1.872510e-05	ci right 3.056948e-05	k: 68	n:2820000
Cons ci ratio: 1.952571e-02	ci left: 1.395354e-02	ci right 1.422902e-02	k: 39736	n:2820000
KS ci ratio: 4.202616e-01	ci left: 2.439330e-05	ci right 3.766274e-05	k: 86	n:2820000
FBXW7   2820000 perm   4675 sec   (603 perm/sec)   p_kst 3.049645e-05   p_cons 1.409078e-02   p_joint 2.411348e-05

Joint ci ratio: 4.719067e-01	ci left: 1.865894e-05	ci right 3.046146e-05	k: 68	n:2830000
Cons ci ratio: 1.948918e-02	ci left: 1.395662e-02	ci right 1.423165e-02	k: 39885	n:2830000
KS ci ratio: 4.178668e-01	ci left: 2.462319e-05	ci right 3.792007e-05	k: 87	n:2830000
FBXW7   2830000 perm   4704 sec   (602 perm/sec)   p_kst 3.074205e-05   p_cons 1.409364e-02   p_joint 2.402827e-05

Joint ci ratio: 4.719067e-01	ci left: 1.859324e-05	ci right 3.035420e-05	k: 68	n:2840000
Cons ci ratio: 1.945137e-02	ci left: 1.396179e-02	ci right 1.423638e-02	k: 40040	n:2840000
KS ci ratio: 4.178669e-01	ci left: 2.453649e-05	ci right 3.778655e-05	k: 87	n:2840000
FBXW7   2840000 perm   4735 sec   (600 perm/sec)   p_kst 3.063380e-05   p_cons 1.409859e-02   p_joint 2.394366e-05

Joint ci ratio: 4.719067e-01	ci left: 1.852800e-05	ci right 3.024769e-05	k: 68	n:2850000
Cons ci ratio: 1.941501e-02	ci left: 1.396518e-02	ci right 1.423932e-02	k: 40190	n:2850000
KS ci ratio: 4.155126e-01	ci left: 2.476448e-05	ci right 3.804143e-05	k: 88	n:2850000
FBXW7   2850000 perm   4767 sec   (598 perm/sec)   p_kst 3.087719e-05   p_cons 1.410175e-02   p_joint 2.385965e-05

Joint ci ratio: 4.719068e-01	ci left: 1.846321e-05	ci right 3.014193e-05	k: 68	n:2860000
Cons ci ratio: 1.937422e-02	ci left: 1.397516e-02	ci right 1.424891e-02	k: 40359	n:2860000
KS ci ratio: 4.131977e-01	ci left: 2.499109e-05	ci right 3.829432e-05	k: 89	n:2860000
FBXW7   2860000 perm   4798 sec   (596 perm/sec)   p_kst 3.111888e-05   p_cons 1.411154e-02   p_joint 2.377622e-05

Joint ci ratio: 4.719068e-01	ci left: 1.839888e-05	ci right 3.003691e-05	k: 68	n:2870000
Cons ci ratio: 1.933974e-02	ci left: 1.397639e-02	ci right 1.424967e-02	k: 40503	n:2870000
KS ci ratio: 4.131977e-01	ci left: 2.490401e-05	ci right 3.816089e-05	k: 89	n:2870000
FBXW7   2870000 perm   4828 sec   (594 perm/sec)   p_kst 3.101045e-05   p_cons 1.411254e-02   p_joint 2.369338e-05

Joint ci ratio: 4.685238e-01	ci left: 1.864106e-05	ci right 3.032071e-05	k: 69	n:2880000
Cons ci ratio: 1.930978e-02	ci left: 1.397140e-02	ci right 1.424416e-02	k: 40629	n:2880000
KS ci ratio: 4.131978e-01	ci left: 2.481754e-05	ci right 3.802839e-05	k: 89	n:2880000
FBXW7   2880000 perm   4860 sec   (593 perm/sec)   p_kst 3.090278e-05   p_cons 1.410729e-02   p_joint 2.395833e-05

Joint ci ratio: 4.685239e-01	ci left: 1.857656e-05	ci right 3.021579e-05	k: 69	n:2890000
Cons ci ratio: 1.927756e-02	ci left: 1.396989e-02	ci right 1.424216e-02	k: 40765	n:2890000
KS ci ratio: 4.131978e-01	ci left: 2.473167e-05	ci right 3.789681e-05	k: 89	n:2890000
FBXW7   2890000 perm   4891 sec   (591 perm/sec)   p_kst 3.079585e-05   p_cons 1.410554e-02   p_joint 2.387543e-05

Joint ci ratio: 4.685239e-01	ci left: 1.851250e-05	ci right 3.011160e-05	k: 69	n:2900000
Cons ci ratio: 1.924192e-02	ci left: 1.397354e-02	ci right 1.424537e-02	k: 40916	n:2900000
KS ci ratio: 4.109211e-01	ci left: 2.495546e-05	ci right 3.814651e-05	k: 90	n:2900000
FBXW7   2900000 perm   4924 sec   (589 perm/sec)   p_kst 3.103448e-05   p_cons 1.410897e-02   p_joint 2.379310e-05

Joint ci ratio: 4.685239e-01	ci left: 1.844888e-05	ci right 3.000812e-05	k: 69	n:2910000
Cons ci ratio: 1.920625e-02	ci left: 1.397750e-02	ci right 1.424890e-02	k: 41068	n:2910000
KS ci ratio: 4.109212e-01	ci left: 2.486970e-05	ci right 3.801543e-05	k: 90	n:2910000
FBXW7   2910000 perm   4956 sec   (587 perm/sec)   p_kst 3.092784e-05   p_cons 1.411271e-02   p_joint 2.371134e-05

Joint ci ratio: 4.685239e-01	ci left: 1.838570e-05	ci right 2.990536e-05	k: 69	n:2920000
Cons ci ratio: 1.917667e-02	ci left: 1.397292e-02	ci right 1.424380e-02	k: 41195	n:2920000
KS ci ratio: 4.109212e-01	ci left: 2.478453e-05	ci right 3.788524e-05	k: 90	n:2920000
FBXW7   2920000 perm   4986 sec   (586 perm/sec)   p_kst 3.082192e-05   p_cons 1.410788e-02   p_joint 2.363014e-05

Joint ci ratio: 4.685239e-01	ci left: 1.832295e-05	ci right 2.980329e-05	k: 69	n:2930000
Cons ci ratio: 1.914417e-02	ci left: 1.397278e-02	ci right 1.424320e-02	k: 41335	n:2930000
KS ci ratio: 4.109212e-01	ci left: 2.469994e-05	ci right 3.775594e-05	k: 90	n:2930000
FBXW7   2930000 perm   5017 sec   (584 perm/sec)   p_kst 3.071672e-05   p_cons 1.410751e-02   p_joint 2.354949e-05

Joint ci ratio: 4.685240e-01	ci left: 1.826063e-05	ci right 2.970192e-05	k: 69	n:2940000
Cons ci ratio: 1.911043e-02	ci left: 1.397468e-02	ci right 1.424465e-02	k: 41481	n:2940000
KS ci ratio: 4.086818e-01	ci left: 2.492100e-05	ci right 3.800253e-05	k: 91	n:2940000
FBXW7   2940000 perm   5046 sec   (583 perm/sec)   p_kst 3.095238e-05   p_cons 1.410918e-02   p_joint 2.346939e-05

Joint ci ratio: 4.685240e-01	ci left: 1.819873e-05	ci right 2.960124e-05	k: 69	n:2950000
Cons ci ratio: 1.908106e-02	ci left: 1.397049e-02	ci right 1.423996e-02	k: 41609	n:2950000
KS ci ratio: 4.064786e-01	ci left: 2.514074e-05	ci right 3.824727e-05	k: 92	n:2950000
FBXW7   2950000 perm   5078 sec   (581 perm/sec)   p_kst 3.118644e-05   p_cons 1.410475e-02   p_joint 2.338983e-05

Joint ci ratio: 4.652128e-01	ci left: 1.843533e-05	ci right 2.987855e-05	k: 70	n:2960000
Cons ci ratio: 1.904881e-02	ci left: 1.397070e-02	ci right 1.423971e-02	k: 41750	n:2960000
KS ci ratio: 4.064786e-01	ci left: 2.505581e-05	ci right 3.811805e-05	k: 92	n:2960000
FBXW7   2960000 perm   5110 sec   (579 perm/sec)   p_kst 3.108108e-05   p_cons 1.410473e-02   p_joint 2.364865e-05

Joint ci ratio: 4.652128e-01	ci left: 1.837325e-05	ci right 2.977795e-05	k: 70	n:2970000
Cons ci ratio: 1.901466e-02	ci left: 1.397392e-02	ci right 1.424251e-02	k: 41900	n:2970000
KS ci ratio: 4.064786e-01	ci left: 2.497145e-05	ci right 3.798971e-05	k: 92	n:2970000
FBXW7   2970000 perm   5140 sec   (578 perm/sec)   p_kst 3.097643e-05   p_cons 1.410774e-02   p_joint 2.356902e-05

Joint ci ratio: 4.619708e-01	ci left: 1.860796e-05	ci right 3.005254e-05	k: 71	n:2980000
Cons ci ratio: 1.898137e-02	ci left: 1.397613e-02	ci right 1.424428e-02	k: 42047	n:2980000
KS ci ratio: 4.064787e-01	ci left: 2.488765e-05	ci right 3.786223e-05	k: 92	n:2980000
FBXW7   2980000 perm   5171 sec   (576 perm/sec)   p_kst 3.087248e-05   p_cons 1.410973e-02   p_joint 2.382550e-05

Joint ci ratio: 4.652128e-01	ci left: 1.825036e-05	ci right 2.957877e-05	k: 70	n:2990000
Cons ci ratio: 1.894871e-02	ci left: 1.397765e-02	ci right 1.424537e-02	k: 42192	n:2990000
KS ci ratio: 4.064787e-01	ci left: 2.480441e-05	ci right 3.773560e-05	k: 92	n:2990000
FBXW7   2990000 perm   5203 sec   (575 perm/sec)   p_kst 3.076923e-05   p_cons 1.411104e-02   p_joint 2.341137e-05

Joint ci ratio: 4.652128e-01	ci left: 1.818952e-05	ci right 2.948017e-05	k: 70	n:3000000
Cons ci ratio: 1.892144e-02	ci left: 1.397153e-02	ci right 1.423874e-02	k: 42314	n:3000000
KS ci ratio: 4.064787e-01	ci left: 2.472173e-05	ci right 3.760981e-05	k: 92	n:3000000
FBXW7   3000000 perm   5235 sec   (573 perm/sec)   p_kst 3.066667e-05   p_cons 1.410467e-02   p_joint 2.333333e-05

Joint ci ratio: 4.652128e-01	ci left: 1.812909e-05	ci right 2.938223e-05	k: 70	n:3010000
Cons ci ratio: 1.889383e-02	ci left: 1.396611e-02	ci right 1.423283e-02	k: 42438	n:3010000
KS ci ratio: 4.064787e-01	ci left: 2.463960e-05	ci right 3.748486e-05	k: 92	n:3010000
FBXW7   3010000 perm   5265 sec   (572 perm/sec)   p_kst 3.056478e-05   p_cons 1.409900e-02   p_joint 2.325581e-05

Joint ci ratio: 4.652129e-01	ci left: 1.806906e-05	ci right 2.928494e-05	k: 70	n:3020000
Cons ci ratio: 1.886634e-02	ci left: 1.396073e-02	ci right 1.422695e-02	k: 42562	n:3020000
KS ci ratio: 4.064787e-01	ci left: 2.455801e-05	ci right 3.736074e-05	k: 92	n:3020000
FBXW7   3020000 perm   5296 sec   (570 perm/sec)   p_kst 3.046358e-05   p_cons 1.409338e-02   p_joint 2.317881e-05

Joint ci ratio: 4.719071e-01	ci left: 1.742732e-05	ci right 2.845081e-05	k: 68	n:3030000
Cons ci ratio: 1.883629e-02	ci left: 1.395933e-02	ci right 1.422510e-02	k: 42698	n:3030000
KS ci ratio: 4.064788e-01	ci left: 2.447696e-05	ci right 3.723744e-05	k: 92	n:3030000
FBXW7   3030000 perm   5326 sec   (569 perm/sec)   p_kst 3.036304e-05   p_cons 1.409175e-02   p_joint 2.244224e-05

Joint ci ratio: 4.719071e-01	ci left: 1.736999e-05	ci right 2.835722e-05	k: 68	n:3040000
Cons ci ratio: 1.880460e-02	ci left: 1.396056e-02	ci right 1.422589e-02	k: 42842	n:3040000
KS ci ratio: 4.064788e-01	ci left: 2.439644e-05	ci right 3.711495e-05	k: 92	n:3040000
FBXW7   3040000 perm   5357 sec   (567 perm/sec)   p_kst 3.026316e-05   p_cons 1.409276e-02   p_joint 2.236842e-05

Joint ci ratio: 4.719071e-01	ci left: 1.731304e-05	ci right 2.826424e-05	k: 68	n:3050000
Cons ci ratio: 1.877550e-02	ci left: 1.395819e-02	ci right 1.422306e-02	k: 42975	n:3050000
KS ci ratio: 4.064788e-01	ci left: 2.431646e-05	ci right 3.699326e-05	k: 92	n:3050000
FBXW7   3050000 perm   5388 sec   (566 perm/sec)   p_kst 3.016393e-05   p_cons 1.409016e-02   p_joint 2.229508e-05

Joint ci ratio: 5.192118e-01	ci left: 1.382415e-05	ci right 2.376486e-05	k: 56	n:3060000
Cons ci ratio: 1.874654e-02	ci left: 1.395583e-02	ci right 1.422025e-02	k: 43108	n:3060000
KS ci ratio: 3.771955e-01	ci left: 2.865665e-05	ci right 4.225427e-05	k: 107	n:3060000
FBXW7   3060000 perm   5419 sec   (565 perm/sec)   p_kst 3.496732e-05   p_cons 1.408758e-02   p_joint 1.830065e-05

Joint ci ratio: 5.192118e-01	ci left: 1.377912e-05	ci right 2.368745e-05	k: 56	n:3070000
Cons ci ratio: 1.871420e-02	ci left: 1.395868e-02	ci right 1.422269e-02	k: 43257	n:3070000
KS ci ratio: 3.771955e-01	ci left: 2.856330e-05	ci right 4.211664e-05	k: 107	n:3070000
FBXW7   3070000 perm   5450 sec   (563 perm/sec)   p_kst 3.485342e-05   p_cons 1.409023e-02   p_joint 1.824104e-05

Joint ci ratio: 5.192118e-01	ci left: 1.373438e-05	ci right 2.361054e-05	k: 56	n:3080000
Cons ci ratio: 1.868312e-02	ci left: 1.395990e-02	ci right 1.422349e-02	k: 43401	n:3080000
KS ci ratio: 3.771955e-01	ci left: 2.847057e-05	ci right 4.197990e-05	k: 107	n:3080000
FBXW7   3080000 perm   5482 sec   (562 perm/sec)   p_kst 3.474026e-05   p_cons 1.409123e-02   p_joint 1.818182e-05

Joint ci ratio: 5.192118e-01	ci left: 1.368993e-05	ci right 2.353413e-05	k: 56	n:3090000
Cons ci ratio: 1.865502e-02	ci left: 1.395691e-02	ci right 1.422005e-02	k: 43532	n:3090000
KS ci ratio: 3.771955e-01	ci left: 2.837843e-05	ci right 4.184404e-05	k: 107	n:3090000
FBXW7   3090000 perm   5513 sec   (561 perm/sec)   p_kst 3.462783e-05   p_cons 1.408803e-02   p_joint 1.812298e-05

Joint ci ratio: 5.192118e-01	ci left: 1.364577e-05	ci right 2.345821e-05	k: 56	n:3100000
Cons ci ratio: 1.862121e-02	ci left: 1.396262e-02	ci right 1.422538e-02	k: 43690	n:3100000
KS ci ratio: 3.771955e-01	ci left: 2.828688e-05	ci right 4.170906e-05	k: 107	n:3100000
FBXW7   3100000 perm   5544 sec   (559 perm/sec)   p_kst 3.451613e-05   p_cons 1.409355e-02   p_joint 1.806452e-05

Joint ci ratio: 5.192118e-01	ci left: 1.360189e-05	ci right 2.338279e-05	k: 56	n:3110000
Cons ci ratio: 1.859123e-02	ci left: 1.396285e-02	ci right 1.422519e-02	k: 43831	n:3110000
KS ci ratio: 3.771956e-01	ci left: 2.819593e-05	ci right 4.157495e-05	k: 107	n:3110000
FBXW7   3110000 perm   5575 sec   (558 perm/sec)   p_kst 3.440514e-05   p_cons 1.409357e-02   p_joint 1.800643e-05

Joint ci ratio: 5.192119e-01	ci left: 1.355830e-05	ci right 2.330784e-05	k: 56	n:3120000
Cons ci ratio: 1.856140e-02	ci left: 1.396308e-02	ci right 1.422500e-02	k: 43972	n:3120000
KS ci ratio: 3.771956e-01	ci left: 2.810556e-05	ci right 4.144169e-05	k: 107	n:3120000
FBXW7   3120000 perm   5607 sec   (556 perm/sec)   p_kst 3.429487e-05   p_cons 1.409359e-02   p_joint 1.794872e-05

Joint ci ratio: 5.192119e-01	ci left: 1.351498e-05	ci right 2.323338e-05	k: 56	n:3130000
Cons ci ratio: 1.853022e-02	ci left: 1.396554e-02	ci right 1.422706e-02	k: 44120	n:3130000
KS ci ratio: 3.771956e-01	ci left: 2.801576e-05	ci right 4.130929e-05	k: 107	n:3130000
FBXW7   3130000 perm   5639 sec   (555 perm/sec)   p_kst 3.418530e-05   p_cons 1.409585e-02   p_joint 1.789137e-05

Joint ci ratio: 5.192119e-01	ci left: 1.347194e-05	ci right 2.315938e-05	k: 56	n:3140000
Cons ci ratio: 1.850323e-02	ci left: 1.396195e-02	ci right 1.422302e-02	k: 44249	n:3140000
KS ci ratio: 3.771956e-01	ci left: 2.792654e-05	ci right 4.117774e-05	k: 107	n:3140000
FBXW7   3140000 perm   5671 sec   (554 perm/sec)   p_kst 3.407643e-05   p_cons 1.409204e-02   p_joint 1.783439e-05

Joint ci ratio: 5.192119e-01	ci left: 1.342917e-05	ci right 2.308586e-05	k: 56	n:3150000
Cons ci ratio: 1.847255e-02	ci left: 1.396408e-02	ci right 1.422475e-02	k: 44396	n:3150000
KS ci ratio: 3.771956e-01	ci left: 2.783788e-05	ci right 4.104701e-05	k: 107	n:3150000
FBXW7   3150000 perm   5705 sec   (552 perm/sec)   p_kst 3.396825e-05   p_cons 1.409397e-02   p_joint 1.777778e-05

Joint ci ratio: 5.192119e-01	ci left: 1.338667e-05	ci right 2.301281e-05	k: 56	n:3160000
Cons ci ratio: 1.843720e-02	ci left: 1.397344e-02	ci right 1.423378e-02	k: 44566	n:3160000
KS ci ratio: 3.771957e-01	ci left: 2.774979e-05	ci right 4.091712e-05	k: 107	n:3160000
FBXW7   3160000 perm   5736 sec   (551 perm/sec)   p_kst 3.386076e-05   p_cons 1.410316e-02   p_joint 1.772152e-05

Joint ci ratio: 5.192119e-01	ci left: 1.334444e-05	ci right 2.294021e-05	k: 56	n:3170000
Cons ci ratio: 1.841019e-02	ci left: 1.397050e-02	ci right 1.423039e-02	k: 44697	n:3170000
KS ci ratio: 3.771957e-01	ci left: 2.766225e-05	ci right 4.078804e-05	k: 107	n:3170000
FBXW7   3170000 perm   5769 sec   (550 perm/sec)   p_kst 3.375394e-05   p_cons 1.410000e-02   p_joint 1.766562e-05

Joint ci ratio: 5.192119e-01	ci left: 1.330248e-05	ci right 2.286807e-05	k: 56	n:3180000
Cons ci ratio: 1.838351e-02	ci left: 1.396726e-02	ci right 1.422671e-02	k: 44827	n:3180000
KS ci ratio: 3.771957e-01	ci left: 2.757526e-05	ci right 4.065978e-05	k: 107	n:3180000
FBXW7   3180000 perm   5800 sec   (548 perm/sec)   p_kst 3.364780e-05   p_cons 1.409654e-02   p_joint 1.761006e-05

Joint ci ratio: 5.192120e-01	ci left: 1.326078e-05	ci right 2.279638e-05	k: 56	n:3190000
Cons ci ratio: 1.835902e-02	ci left: 1.396092e-02	ci right 1.421991e-02	k: 44947	n:3190000
KS ci ratio: 3.754614e-01	ci left: 2.777265e-05	ci right 4.087531e-05	k: 108	n:3190000
FBXW7   3190000 perm   5833 sec   (547 perm/sec)   p_kst 3.385580e-05   p_cons 1.408997e-02   p_joint 1.755486e-05

Joint ci ratio: 5.192120e-01	ci left: 1.321934e-05	ci right 2.272515e-05	k: 56	n:3200000
Cons ci ratio: 1.833111e-02	ci left: 1.395990e-02	ci right 1.421848e-02	k: 45084	n:3200000
KS ci ratio: 3.754615e-01	ci left: 2.768586e-05	ci right 4.074758e-05	k: 108	n:3200000
FBXW7   3200000 perm   5866 sec   (546 perm/sec)   p_kst 3.375000e-05   p_cons 1.408875e-02   p_joint 1.750000e-05

Joint ci ratio: 5.192120e-01	ci left: 1.317816e-05	ci right 2.265435e-05	k: 56	n:3210000
Cons ci ratio: 1.829718e-02	ci left: 1.396820e-02	ci right 1.422645e-02	k: 45251	n:3210000
KS ci ratio: 3.754615e-01	ci left: 2.759961e-05	ci right 4.062064e-05	k: 108	n:3210000
FBXW7   3210000 perm   5899 sec   (544 perm/sec)   p_kst 3.364486e-05   p_cons 1.409688e-02   p_joint 1.744548e-05

Joint ci ratio: 5.285681e-01	ci left: 1.259830e-05	ci right 2.188140e-05	k: 54	n:3220000
Cons ci ratio: 1.827078e-02	ci left: 1.396532e-02	ci right 1.422313e-02	k: 45382	n:3220000
KS ci ratio: 3.720635e-01	ci left: 2.807667e-05	ci right 4.117369e-05	k: 110	n:3220000
FBXW7   3220000 perm   5933 sec   (543 perm/sec)   p_kst 3.416149e-05   p_cons 1.409379e-02   p_joint 1.677019e-05

Joint ci ratio: 5.285681e-01	ci left: 1.255930e-05	ci right 2.181366e-05	k: 54	n:3230000
Cons ci ratio: 1.824511e-02	ci left: 1.396153e-02	ci right 1.421891e-02	k: 45510	n:3230000
KS ci ratio: 3.720635e-01	ci left: 2.798975e-05	ci right 4.104622e-05	k: 110	n:3230000
FBXW7   3230000 perm   5965 sec   (542 perm/sec)   p_kst 3.405573e-05   p_cons 1.408978e-02   p_joint 1.671827e-05

Joint ci ratio: 5.238274e-01	ci left: 1.278815e-05	ci right 2.209564e-05	k: 55	n:3240000
Cons ci ratio: 1.820882e-02	ci left: 1.397405e-02	ci right 1.423114e-02	k: 45691	n:3240000
KS ci ratio: 3.720635e-01	ci left: 2.790336e-05	ci right 4.091953e-05	k: 110	n:3240000
FBXW7   3240000 perm   5997 sec   (540 perm/sec)   p_kst 3.395062e-05   p_cons 1.410216e-02   p_joint 1.697531e-05

Joint ci ratio: 5.238274e-01	ci left: 1.274880e-05	ci right 2.202765e-05	k: 55	n:3250000
Cons ci ratio: 1.818300e-02	ci left: 1.397087e-02	ci right 1.422753e-02	k: 45821	n:3250000
KS ci ratio: 3.720635e-01	ci left: 2.781750e-05	ci right 4.079363e-05	k: 110	n:3250000
FBXW7   3250000 perm   6032 sec   (539 perm/sec)   p_kst 3.384615e-05   p_cons 1.409877e-02   p_joint 1.692308e-05

Joint ci ratio: 5.238275e-01	ci left: 1.270970e-05	ci right 2.196009e-05	k: 55	n:3260000
Cons ci ratio: 1.815690e-02	ci left: 1.396832e-02	ci right 1.422457e-02	k: 45953	n:3260000
KS ci ratio: 3.720635e-01	ci left: 2.773217e-05	ci right 4.066849e-05	k: 110	n:3260000
FBXW7   3260000 perm   6065 sec   (537 perm/sec)   p_kst 3.374233e-05   p_cons 1.409601e-02   p_joint 1.687117e-05

Joint ci ratio: 5.238275e-01	ci left: 1.267083e-05	ci right 2.189293e-05	k: 55	n:3270000
Cons ci ratio: 1.812751e-02	ci left: 1.397096e-02	ci right 1.422684e-02	k: 46102	n:3270000
KS ci ratio: 3.720636e-01	ci left: 2.764736e-05	ci right 4.054413e-05	k: 110	n:3270000
FBXW7   3270000 perm   6099 sec   (536 perm/sec)   p_kst 3.363914e-05   p_cons 1.409847e-02   p_joint 1.681957e-05

Joint ci ratio: 5.238275e-01	ci left: 1.263220e-05	ci right 2.182618e-05	k: 55	n:3280000
Cons ci ratio: 1.809985e-02	ci left: 1.397116e-02	ci right 1.422665e-02	k: 46243	n:3280000
KS ci ratio: 3.720636e-01	ci left: 2.756307e-05	ci right 4.042052e-05	k: 110	n:3280000
FBXW7   3280000 perm   6131 sec   (535 perm/sec)   p_kst 3.353659e-05   p_cons 1.409848e-02   p_joint 1.676829e-05

Joint ci ratio: 5.238275e-01	ci left: 1.259380e-05	ci right 2.175984e-05	k: 55	n:3290000
Cons ci ratio: 1.807193e-02	ci left: 1.397197e-02	ci right 1.422707e-02	k: 46386	n:3290000
KS ci ratio: 3.703988e-01	ci left: 2.775489e-05	ci right 4.062984e-05	k: 111	n:3290000
FBXW7   3290000 perm   6165 sec   (534 perm/sec)   p_kst 3.373860e-05   p_cons 1.409909e-02   p_joint 1.671733e-05

Joint ci ratio: 5.238275e-01	ci left: 1.255564e-05	ci right 2.169390e-05	k: 55	n:3300000
Cons ci ratio: 1.804590e-02	ci left: 1.397005e-02	ci right 1.422474e-02	k: 46520	n:3300000
KS ci ratio: 3.703988e-01	ci left: 2.767078e-05	ci right 4.050672e-05	k: 111	n:3300000
FBXW7   3300000 perm   6199 sec   (532 perm/sec)   p_kst 3.363636e-05   p_cons 1.409697e-02   p_joint 1.666667e-05

Joint ci ratio: 5.238275e-01	ci left: 1.251771e-05	ci right 2.162836e-05	k: 55	n:3310000
Cons ci ratio: 1.802312e-02	ci left: 1.396333e-02	ci right 1.421758e-02	k: 46638	n:3310000
KS ci ratio: 3.687562e-01	ci left: 2.786124e-05	ci right 4.071439e-05	k: 112	n:3310000
FBXW7   3310000 perm   6232 sec   (531 perm/sec)   p_kst 3.383686e-05   p_cons 1.409003e-02   p_joint 1.661631e-05

Joint ci ratio: 5.238275e-01	ci left: 1.248000e-05	ci right 2.156322e-05	k: 55	n:3320000
Cons ci ratio: 1.799789e-02	ci left: 1.396055e-02	ci right 1.421439e-02	k: 46769	n:3320000
KS ci ratio: 3.687562e-01	ci left: 2.777732e-05	ci right 4.059176e-05	k: 112	n:3320000
FBXW7   3320000 perm   6267 sec   (530 perm/sec)   p_kst 3.373494e-05   p_cons 1.408705e-02   p_joint 1.656627e-05

Joint ci ratio: 5.285682e-01	ci left: 1.218214e-05	ci right 2.115859e-05	k: 54	n:3330000
Cons ci ratio: 1.797043e-02	ci left: 1.396138e-02	ci right 1.421484e-02	k: 46912	n:3330000
KS ci ratio: 3.687563e-01	ci left: 2.769391e-05	ci right 4.046986e-05	k: 112	n:3330000
FBXW7   3330000 perm   6300 sec   (529 perm/sec)   p_kst 3.363363e-05   p_cons 1.408769e-02   p_joint 1.621622e-05

Joint ci ratio: 5.285683e-01	ci left: 1.214567e-05	ci right 2.109524e-05	k: 54	n:3340000
Cons ci ratio: 1.794581e-02	ci left: 1.395803e-02	ci right 1.421108e-02	k: 47041	n:3340000
KS ci ratio: 3.687563e-01	ci left: 2.761099e-05	ci right 4.034870e-05	k: 112	n:3340000
FBXW7   3340000 perm   6335 sec   (527 perm/sec)   p_kst 3.353293e-05   p_cons 1.408413e-02   p_joint 1.616766e-05

Joint ci ratio: 5.285683e-01	ci left: 1.210941e-05	ci right 2.103227e-05	k: 54	n:3350000
Cons ci ratio: 1.791916e-02	ci left: 1.395797e-02	ci right 1.421064e-02	k: 47181	n:3350000
KS ci ratio: 3.687563e-01	ci left: 2.752857e-05	ci right 4.022825e-05	k: 112	n:3350000
FBXW7   3350000 perm   6369 sec   (526 perm/sec)   p_kst 3.343284e-05   p_cons 1.408388e-02   p_joint 1.611940e-05

Joint ci ratio: 5.285683e-01	ci left: 1.207337e-05	ci right 2.096968e-05	k: 54	n:3360000
Cons ci ratio: 1.789571e-02	ci left: 1.395316e-02	ci right 1.420541e-02	k: 47305	n:3360000
KS ci ratio: 3.687563e-01	ci left: 2.744664e-05	ci right 4.010853e-05	k: 112	n:3360000
FBXW7   3360000 perm   6408 sec   (524 perm/sec)   p_kst 3.333333e-05   p_cons 1.407887e-02   p_joint 1.607143e-05

Joint ci ratio: 5.285683e-01	ci left: 1.203755e-05	ci right 2.090745e-05	k: 54	n:3370000
Cons ci ratio: 1.786872e-02	ci left: 1.395400e-02	ci right 1.420588e-02	k: 47448	n:3370000
KS ci ratio: 3.687563e-01	ci left: 2.736520e-05	ci right 3.998951e-05	k: 112	n:3370000
FBXW7   3370000 perm   6443 sec   (523 perm/sec)   p_kst 3.323442e-05   p_cons 1.407953e-02   p_joint 1.602374e-05

Joint ci ratio: 5.285683e-01	ci left: 1.200193e-05	ci right 2.084560e-05	k: 54	n:3380000
Cons ci ratio: 1.784261e-02	ci left: 1.395366e-02	ci right 1.420516e-02	k: 47587	n:3380000
KS ci ratio: 3.671354e-01	ci left: 2.755274e-05	ci right 4.019429e-05	k: 113	n:3380000
FBXW7   3380000 perm   6477 sec   (522 perm/sec)   p_kst 3.343195e-05   p_cons 1.407899e-02   p_joint 1.597633e-05

Joint ci ratio: 5.238276e-01	ci left: 1.222230e-05	ci right 2.111796e-05	k: 55	n:3390000
Cons ci ratio: 1.781907e-02	ci left: 1.394950e-02	ci right 1.420059e-02	k: 47713	n:3390000
KS ci ratio: 3.671354e-01	ci left: 2.747146e-05	ci right 4.007572e-05	k: 113	n:3390000
FBXW7   3390000 perm   6513 sec   (521 perm/sec)   p_kst 3.333333e-05   p_cons 1.407463e-02   p_joint 1.622419e-05

Joint ci ratio: 5.238276e-01	ci left: 1.218635e-05	ci right 2.105585e-05	k: 55	n:3400000
Cons ci ratio: 1.779657e-02	ci left: 1.394390e-02	ci right 1.419457e-02	k: 47834	n:3400000
KS ci ratio: 3.671354e-01	ci left: 2.739066e-05	ci right 3.995786e-05	k: 113	n:3400000
FBXW7   3400000 perm   6548 sec   (519 perm/sec)   p_kst 3.323529e-05   p_cons 1.406882e-02   p_joint 1.617647e-05

Joint ci ratio: 5.238277e-01	ci left: 1.215062e-05	ci right 2.099410e-05	k: 55	n:3410000
Cons ci ratio: 1.776852e-02	ci left: 1.394710e-02	ci right 1.419742e-02	k: 47985	n:3410000
KS ci ratio: 3.671354e-01	ci left: 2.731034e-05	ci right 3.984068e-05	k: 113	n:3410000
FBXW7   3410000 perm   6582 sec   (518 perm/sec)   p_kst 3.313783e-05   p_cons 1.407185e-02   p_joint 1.612903e-05

Joint ci ratio: 5.238277e-01	ci left: 1.211509e-05	ci right 2.093272e-05	k: 55	n:3420000
Cons ci ratio: 1.774434e-02	ci left: 1.394445e-02	ci right 1.419439e-02	k: 48116	n:3420000
KS ci ratio: 3.671355e-01	ci left: 2.723048e-05	ci right 3.972418e-05	k: 113	n:3420000
FBXW7   3420000 perm   6616 sec   (517 perm/sec)   p_kst 3.304094e-05   p_cons 1.406901e-02   p_joint 1.608187e-05

Joint ci ratio: 5.238277e-01	ci left: 1.207977e-05	ci right 2.087169e-05	k: 55	n:3430000
Cons ci ratio: 1.771989e-02	ci left: 1.394240e-02	ci right 1.419195e-02	k: 48249	n:3430000
KS ci ratio: 3.671355e-01	ci left: 2.715109e-05	ci right 3.960837e-05	k: 113	n:3430000
FBXW7   3430000 perm   6650 sec   (516 perm/sec)   p_kst 3.294461e-05   p_cons 1.406676e-02   p_joint 1.603499e-05

Joint ci ratio: 5.238277e-01	ci left: 1.204465e-05	ci right 2.081101e-05	k: 55	n:3440000
Cons ci ratio: 1.769183e-02	ci left: 1.394615e-02	ci right 1.419537e-02	k: 48402	n:3440000
KS ci ratio: 3.671355e-01	ci left: 2.707217e-05	ci right 3.949323e-05	k: 113	n:3440000
FBXW7   3440000 perm   6684 sec   (515 perm/sec)   p_kst 3.284884e-05   p_cons 1.407035e-02   p_joint 1.598837e-05

Joint ci ratio: 5.192123e-01	ci left: 1.226141e-05	ci right 2.107840e-05	k: 56	n:3450000
Cons ci ratio: 1.767184e-02	ci left: 1.393747e-02	ci right 1.418625e-02	k: 48512	n:3450000
KS ci ratio: 3.671355e-01	ci left: 2.699370e-05	ci right 3.937876e-05	k: 113	n:3450000
FBXW7   3450000 perm   6719 sec   (513 perm/sec)   p_kst 3.275362e-05   p_cons 1.406145e-02   p_joint 1.623188e-05

Joint ci ratio: 5.147168e-01	ci left: 1.247726e-05	ci right 2.134391e-05	k: 57	n:3460000
Cons ci ratio: 1.764769e-02	ci left: 1.393546e-02	ci right 1.418386e-02	k: 48645	n:3460000
KS ci ratio: 3.655358e-01	ci left: 2.717809e-05	ci right 3.958045e-05	k: 114	n:3460000
FBXW7   3460000 perm   6753 sec   (512 perm/sec)   p_kst 3.294798e-05   p_cons 1.405925e-02   p_joint 1.647399e-05

Joint ci ratio: 5.147168e-01	ci left: 1.244130e-05	ci right 2.128240e-05	k: 57	n:3470000
Cons ci ratio: 1.762473e-02	ci left: 1.393173e-02	ci right 1.417974e-02	k: 48772	n:3470000
KS ci ratio: 3.655358e-01	ci left: 2.709977e-05	ci right 3.946639e-05	k: 114	n:3470000
FBXW7   3470000 perm   6787 sec   (511 perm/sec)   p_kst 3.285303e-05   p_cons 1.405533e-02   p_joint 1.642651e-05

Joint ci ratio: 5.147169e-01	ci left: 1.240555e-05	ci right 2.122124e-05	k: 57	n:3480000
Cons ci ratio: 1.760223e-02	ci left: 1.392746e-02	ci right 1.417507e-02	k: 48897	n:3480000
KS ci ratio: 3.655358e-01	ci left: 2.702190e-05	ci right 3.935298e-05	k: 114	n:3480000
FBXW7   3480000 perm   6822 sec   (510 perm/sec)   p_kst 3.275862e-05   p_cons 1.405086e-02   p_joint 1.637931e-05

Joint ci ratio: 5.103361e-01	ci left: 1.261946e-05	ci right 2.148374e-05	k: 58	n:3490000
Cons ci ratio: 1.757927e-02	ci left: 1.392407e-02	ci right 1.417129e-02	k: 49025	n:3490000
KS ci ratio: 3.639568e-01	ci left: 2.720474e-05	ci right 3.955290e-05	k: 115	n:3490000
FBXW7   3490000 perm   6857 sec   (509 perm/sec)   p_kst 3.295129e-05   p_cons 1.404728e-02   p_joint 1.661891e-05

Joint ci ratio: 5.103362e-01	ci left: 1.258340e-05	ci right 2.142236e-05	k: 58	n:3500000
Cons ci ratio: 1.755024e-02	ci left: 1.393037e-02	ci right 1.417729e-02	k: 49187	n:3500000
KS ci ratio: 3.639568e-01	ci left: 2.712702e-05	ci right 3.943989e-05	k: 115	n:3500000
FBXW7   3500000 perm   6891 sec   (508 perm/sec)   p_kst 3.285714e-05   p_cons 1.405343e-02   p_joint 1.657143e-05

Joint ci ratio: 5.103362e-01	ci left: 1.254755e-05	ci right 2.136133e-05	k: 58	n:3510000
Cons ci ratio: 1.752568e-02	ci left: 1.392982e-02	ci right 1.417639e-02	k: 49325	n:3510000
KS ci ratio: 3.639568e-01	ci left: 2.704973e-05	ci right 3.932753e-05	k: 115	n:3510000
FBXW7   3510000 perm   6926 sec   (507 perm/sec)   p_kst 3.276353e-05   p_cons 1.405271e-02   p_joint 1.652422e-05

Joint ci ratio: 5.192124e-01	ci left: 1.201758e-05	ci right 2.065923e-05	k: 56	n:3520000
Cons ci ratio: 1.750014e-02	ci left: 1.393098e-02	ci right 1.417721e-02	k: 49469	n:3520000
KS ci ratio: 3.639568e-01	ci left: 2.697288e-05	ci right 3.921580e-05	k: 115	n:3520000
FBXW7   3520000 perm   6961 sec   (506 perm/sec)   p_kst 3.267045e-05   p_cons 1.405369e-02   p_joint 1.590909e-05

Joint ci ratio: 5.192124e-01	ci left: 1.198353e-05	ci right 2.060070e-05	k: 56	n:3530000
Cons ci ratio: 1.747508e-02	ci left: 1.393157e-02	ci right 1.417745e-02	k: 49611	n:3530000
KS ci ratio: 3.639568e-01	ci left: 2.689647e-05	ci right 3.910471e-05	k: 115	n:3530000
FBXW7   3530000 perm   6996 sec   (505 perm/sec)   p_kst 3.257790e-05   p_cons 1.405411e-02   p_joint 1.586402e-05

Joint ci ratio: 5.192124e-01	ci left: 1.194968e-05	ci right 2.054251e-05	k: 56	n:3540000
Cons ci ratio: 1.744763e-02	ci left: 1.393609e-02	ci right 1.418166e-02	k: 49767	n:3540000
KS ci ratio: 3.623981e-01	ci left: 2.707720e-05	ci right 3.930240e-05	k: 116	n:3540000
FBXW7   3540000 perm   7031 sec   (503 perm/sec)   p_kst 3.276836e-05   p_cons 1.405847e-02   p_joint 1.581921e-05

Joint ci ratio: 5.192124e-01	ci left: 1.191602e-05	ci right 2.048464e-05	k: 56	n:3550000
Cons ci ratio: 1.742190e-02	ci left: 1.393806e-02	ci right 1.418330e-02	k: 49914	n:3550000
KS ci ratio: 3.623981e-01	ci left: 2.700093e-05	ci right 3.919169e-05	k: 116	n:3550000
FBXW7   3550000 perm   7067 sec   (502 perm/sec)   p_kst 3.267606e-05   p_cons 1.406028e-02   p_joint 1.577465e-05

Joint ci ratio: 5.192125e-01	ci left: 1.188255e-05	ci right 2.042710e-05	k: 56	n:3560000
Cons ci ratio: 1.739911e-02	ci left: 1.393555e-02	ci right 1.418041e-02	k: 50045	n:3560000
KS ci ratio: 3.623981e-01	ci left: 2.692508e-05	ci right 3.908160e-05	k: 116	n:3560000
FBXW7   3560000 perm   7103 sec   (501 perm/sec)   p_kst 3.258427e-05   p_cons 1.405758e-02   p_joint 1.573034e-05

Joint ci ratio: 5.192125e-01	ci left: 1.184926e-05	ci right 2.036988e-05	k: 56	n:3570000
Cons ci ratio: 1.737272e-02	ci left: 1.393890e-02	ci right 1.418346e-02	k: 50197	n:3570000
KS ci ratio: 3.623981e-01	ci left: 2.684966e-05	ci right 3.897213e-05	k: 116	n:3570000
FBXW7   3570000 perm   7138 sec   (500 perm/sec)   p_kst 3.249300e-05   p_cons 1.406078e-02   p_joint 1.568627e-05

Joint ci ratio: 5.285686e-01	ci left: 1.133143e-05	ci right 1.968104e-05	k: 54	n:3580000
Cons ci ratio: 1.734802e-02	ci left: 1.393974e-02	ci right 1.418395e-02	k: 50340	n:3580000
KS ci ratio: 3.623982e-01	ci left: 2.677467e-05	ci right 3.886327e-05	k: 116	n:3580000
FBXW7   3580000 perm   7174 sec   (499 perm/sec)   p_kst 3.240223e-05   p_cons 1.406145e-02   p_joint 1.508380e-05

Joint ci ratio: 5.285686e-01	ci left: 1.129987e-05	ci right 1.962622e-05	k: 54	n:3590000
Cons ci ratio: 1.732621e-02	ci left: 1.393613e-02	ci right 1.417997e-02	k: 50467	n:3590000
KS ci ratio: 3.623982e-01	ci left: 2.670008e-05	ci right 3.875501e-05	k: 116	n:3590000
FBXW7   3590000 perm   7210 sec   (498 perm/sec)   p_kst 3.231198e-05   p_cons 1.405766e-02   p_joint 1.504178e-05

Joint ci ratio: 5.285686e-01	ci left: 1.126848e-05	ci right 1.957170e-05	k: 54	n:3600000
Cons ci ratio: 1.730379e-02	ci left: 1.393365e-02	ci right 1.417713e-02	k: 50598	n:3600000
KS ci ratio: 3.623982e-01	ci left: 2.662592e-05	ci right 3.864736e-05	k: 116	n:3600000
FBXW7   3600000 perm   7246 sec   (497 perm/sec)   p_kst 3.222222e-05   p_cons 1.405500e-02   p_joint 1.500000e-05

Joint ci ratio: 5.238279e-01	ci left: 1.147745e-05	ci right 1.983100e-05	k: 55	n:3610000
Cons ci ratio: 1.728112e-02	ci left: 1.393174e-02	ci right 1.417486e-02	k: 50731	n:3610000
KS ci ratio: 3.623982e-01	ci left: 2.655216e-05	ci right 3.854031e-05	k: 116	n:3610000
FBXW7   3610000 perm   7280 sec   (496 perm/sec)   p_kst 3.213296e-05   p_cons 1.405291e-02   p_joint 1.523546e-05

Joint ci ratio: 5.238279e-01	ci left: 1.144575e-05	ci right 1.977621e-05	k: 55	n:3620000
Cons ci ratio: 1.725801e-02	ci left: 1.393066e-02	ci right 1.417344e-02	k: 50867	n:3620000
KS ci ratio: 3.623982e-01	ci left: 2.647881e-05	ci right 3.843384e-05	k: 116	n:3620000
FBXW7   3620000 perm   7316 sec   (495 perm/sec)   p_kst 3.204420e-05   p_cons 1.405166e-02   p_joint 1.519337e-05

Joint ci ratio: 2.988901e-01	ci left: 4.031144e-05	ci right 5.472110e-05	k: 171	n:3630000
Cons ci ratio: 1.723414e-02	ci left: 1.393096e-02	ci right 1.417340e-02	k: 51008	n:3630000
KS ci ratio: 3.608593e-01	ci left: 2.665632e-05	ci right 3.862837e-05	k: 117	n:3630000
FBXW7   3630000 perm   7352 sec   (494 perm/sec)   p_kst 3.223140e-05   p_cons 1.405179e-02   p_joint 4.710744e-05

Joint ci ratio: 2.988901e-01	ci left: 4.020069e-05	ci right 5.457077e-05	k: 171	n:3640000
Cons ci ratio: 1.721139e-02	ci left: 1.392961e-02	ci right 1.417171e-02	k: 51143	n:3640000
KS ci ratio: 3.608594e-01	ci left: 2.658309e-05	ci right 3.852225e-05	k: 117	n:3640000
FBXW7   3640000 perm   7388 sec   (493 perm/sec)   p_kst 3.214286e-05   p_cons 1.405027e-02   p_joint 4.697802e-05

Joint ci ratio: 2.980250e-01	ci left: 4.034401e-05	ci right 5.471568e-05	k: 172	n:3650000
Cons ci ratio: 1.718992e-02	ci left: 1.392637e-02	ci right 1.416810e-02	k: 51271	n:3650000
KS ci ratio: 3.608594e-01	ci left: 2.651026e-05	ci right 3.841671e-05	k: 117	n:3650000
FBXW7   3650000 perm   7424 sec   (492 perm/sec)   p_kst 3.205479e-05   p_cons 1.404685e-02   p_joint 4.712329e-05

Joint ci ratio: 2.997628e-01	ci left: 3.972830e-05	ci right 5.397889e-05	k: 170	n:3660000
Cons ci ratio: 1.717074e-02	ci left: 1.391960e-02	ci right 1.416095e-02	k: 51386	n:3660000
KS ci ratio: 3.608594e-01	ci left: 2.643783e-05	ci right 3.831174e-05	k: 117	n:3660000
FBXW7   3660000 perm   7460 sec   (491 perm/sec)   p_kst 3.196721e-05   p_cons 1.403989e-02   p_joint 4.644809e-05

Joint ci ratio: 2.997629e-01	ci left: 3.962005e-05	ci right 5.383181e-05	k: 170	n:3670000
Cons ci ratio: 1.714655e-02	ci left: 1.392101e-02	ci right 1.416204e-02	k: 51531	n:3670000
KS ci ratio: 3.608594e-01	ci left: 2.636579e-05	ci right 3.820735e-05	k: 117	n:3670000
FBXW7   3670000 perm   7496 sec   (490 perm/sec)   p_kst 3.188011e-05   p_cons 1.404114e-02   p_joint 4.632153e-05

Joint ci ratio: 2.988902e-01	ci left: 3.976372e-05	ci right 5.397761e-05	k: 171	n:3680000
Cons ci ratio: 1.712113e-02	ci left: 1.392458e-02	ci right 1.416531e-02	k: 51684	n:3680000
KS ci ratio: 3.608594e-01	ci left: 2.629414e-05	ci right 3.810353e-05	k: 117	n:3680000
FBXW7   3680000 perm   7532 sec   (489 perm/sec)   p_kst 3.179348e-05   p_cons 1.404457e-02   p_joint 4.646739e-05

Joint ci ratio: 2.980251e-01	ci left: 3.990668e-05	ci right 5.412256e-05	k: 172	n:3690000
Cons ci ratio: 1.709748e-02	ci left: 1.392544e-02	ci right 1.416584e-02	k: 51827	n:3690000
KS ci ratio: 3.593400e-01	ci left: 2.646937e-05	ci right 3.829569e-05	k: 118	n:3690000
FBXW7   3690000 perm   7568 sec   (488 perm/sec)   p_kst 3.197832e-05   p_cons 1.404526e-02   p_joint 4.661247e-05

Joint ci ratio: 2.980251e-01	ci left: 3.979882e-05	ci right 5.397628e-05	k: 172	n:3700000
Cons ci ratio: 1.707444e-02	ci left: 1.392547e-02	ci right 1.416556e-02	k: 51967	n:3700000
KS ci ratio: 3.593400e-01	ci left: 2.639783e-05	ci right 3.819218e-05	k: 118	n:3700000
FBXW7   3700000 perm   7606 sec   (486 perm/sec)   p_kst 3.189189e-05   p_cons 1.404514e-02   p_joint 4.648649e-05

Joint ci ratio: 2.980251e-01	ci left: 3.969155e-05	ci right 5.383080e-05	k: 172	n:3710000
Cons ci ratio: 1.705331e-02	ci left: 1.392256e-02	ci right 1.416229e-02	k: 52096	n:3710000
KS ci ratio: 3.593400e-01	ci left: 2.632668e-05	ci right 3.808924e-05	k: 118	n:3710000
FBXW7   3710000 perm   7643 sec   (485 perm/sec)   p_kst 3.180593e-05   p_cons 1.404205e-02   p_joint 4.636119e-05

Joint ci ratio: 2.971674e-01	ci left: 3.983360e-05	ci right 5.397492e-05	k: 173	n:3720000
Cons ci ratio: 1.703061e-02	ci left: 1.392234e-02	ci right 1.416175e-02	k: 52235	n:3720000
KS ci ratio: 3.578396e-01	ci left: 2.650051e-05	ci right 3.827978e-05	k: 119	n:3720000
FBXW7   3720000 perm   7680 sec   (484 perm/sec)   p_kst 3.198925e-05   p_cons 1.404167e-02   p_joint 4.650538e-05

Joint ci ratio: 2.971675e-01	ci left: 3.972681e-05	ci right 5.383021e-05	k: 173	n:3730000
Cons ci ratio: 1.700817e-02	ci left: 1.392186e-02	ci right 1.416094e-02	k: 52373	n:3730000
KS ci ratio: 3.578396e-01	ci left: 2.642946e-05	ci right 3.817716e-05	k: 119	n:3730000
FBXW7   3730000 perm   7717 sec   (483 perm/sec)   p_kst 3.190349e-05   p_cons 1.404102e-02   p_joint 4.638070e-05

Joint ci ratio: 2.963172e-01	ci left: 3.986806e-05	ci right 5.397351e-05	k: 174	n:3740000
Cons ci ratio: 1.698565e-02	ci left: 1.392164e-02	ci right 1.416040e-02	k: 52512	n:3740000
KS ci ratio: 3.563578e-01	ci left: 2.660219e-05	ci right 3.836635e-05	k: 120	n:3740000
FBXW7   3740000 perm   7755 sec   (482 perm/sec)   p_kst 3.208556e-05   p_cons 1.404064e-02   p_joint 4.652406e-05

Joint ci ratio: 2.954741e-01	ci left: 4.000862e-05	ci right 5.411598e-05	k: 175	n:3750000
Cons ci ratio: 1.696419e-02	ci left: 1.391983e-02	ci right 1.415825e-02	k: 52645	n:3750000
KS ci ratio: 3.563578e-01	ci left: 2.653125e-05	ci right 3.826404e-05	k: 120	n:3750000
FBXW7   3750000 perm   7792 sec   (481 perm/sec)   p_kst 3.200000e-05   p_cons 1.403867e-02   p_joint 4.666667e-05

Joint ci ratio: 2.938094e-01	ci left: 4.039482e-05	ci right 5.454317e-05	k: 177	n:3760000
Cons ci ratio: 1.694396e-02	ci left: 1.391618e-02	ci right 1.415425e-02	k: 52771	n:3760000
KS ci ratio: 3.534487e-01	ci left: 2.694518e-05	ci right 3.874141e-05	k: 122	n:3760000
FBXW7   3760000 perm   7830 sec   (480 perm/sec)   p_kst 3.244681e-05   p_cons 1.403484e-02   p_joint 4.707447e-05

Joint ci ratio: 2.929876e-01	ci left: 4.053341e-05	ci right 5.468321e-05	k: 178	n:3770000
Cons ci ratio: 1.692056e-02	ci left: 1.391783e-02	ci right 1.415560e-02	k: 52917	n:3770000
KS ci ratio: 3.520206e-01	ci left: 2.711546e-05	ci right 3.892731e-05	k: 123	n:3770000
FBXW7   3770000 perm   7867 sec   (479 perm/sec)   p_kst 3.262599e-05   p_cons 1.403634e-02   p_joint 4.721485e-05

Joint ci ratio: 2.921726e-01	ci left: 4.067132e-05	ci right 5.482245e-05	k: 179	n:3780000
Cons ci ratio: 1.689838e-02	ci left: 1.391763e-02	ci right 1.415508e-02	k: 53056	n:3780000
KS ci ratio: 3.520206e-01	ci left: 2.704373e-05	ci right 3.882433e-05	k: 123	n:3780000
FBXW7   3780000 perm   7904 sec   (478 perm/sec)   p_kst 3.253968e-05   p_cons 1.403598e-02   p_joint 4.735450e-05

Joint ci ratio: 2.921726e-01	ci left: 4.056400e-05	ci right 5.467780e-05	k: 179	n:3790000
Cons ci ratio: 1.687629e-02	ci left: 1.391743e-02	ci right 1.415456e-02	k: 53195	n:3790000
KS ci ratio: 3.520206e-01	ci left: 2.697237e-05	ci right 3.872189e-05	k: 123	n:3790000
FBXW7   3790000 perm   7941 sec   (477 perm/sec)   p_kst 3.245383e-05   p_cons 1.403562e-02   p_joint 4.722955e-05

Joint ci ratio: 2.921726e-01	ci left: 4.045726e-05	ci right 5.453392e-05	k: 179	n:3800000
Cons ci ratio: 1.685509e-02	ci left: 1.391592e-02	ci right 1.415272e-02	k: 53329	n:3800000
KS ci ratio: 3.520206e-01	ci left: 2.690139e-05	ci right 3.861999e-05	k: 123	n:3800000
FBXW7   3800000 perm   7978 sec   (476 perm/sec)   p_kst 3.236842e-05   p_cons 1.403395e-02   p_joint 4.710526e-05

Joint ci ratio: 2.921726e-01	ci left: 4.035107e-05	ci right 5.439078e-05	k: 179	n:3810000
Cons ci ratio: 1.683190e-02	ci left: 1.391781e-02	ci right 1.415432e-02	k: 53476	n:3810000
KS ci ratio: 3.520206e-01	ci left: 2.683078e-05	ci right 3.851863e-05	k: 123	n:3810000
FBXW7   3810000 perm   8016 sec   (475 perm/sec)   p_kst 3.228346e-05   p_cons 1.403570e-02   p_joint 4.698163e-05

Joint ci ratio: 2.913644e-01	ci left: 4.048806e-05	ci right 5.452928e-05	k: 180	n:3820000
Cons ci ratio: 1.680895e-02	ci left: 1.391944e-02	ci right 1.415565e-02	k: 53622	n:3820000
KS ci ratio: 3.506097e-01	ci left: 2.699923e-05	ci right 3.870258e-05	k: 124	n:3820000
FBXW7   3820000 perm   8054 sec   (474 perm/sec)   p_kst 3.246073e-05   p_cons 1.403717e-02   p_joint 4.712042e-05

Joint ci ratio: 2.905628e-01	ci left: 4.062439e-05	ci right 5.466701e-05	k: 181	n:3830000
Cons ci ratio: 1.678769e-02	ci left: 1.391845e-02	ci right 1.415435e-02	k: 53758	n:3830000
KS ci ratio: 3.506097e-01	ci left: 2.692873e-05	ci right 3.860153e-05	k: 124	n:3830000
FBXW7   3830000 perm   8092 sec   (473 perm/sec)   p_kst 3.237598e-05   p_cons 1.403603e-02   p_joint 4.725849e-05

Joint ci ratio: 2.988905e-01	ci left: 3.810690e-05	ci right 5.172855e-05	k: 171	n:3840000
Cons ci ratio: 1.676587e-02	ci left: 1.391851e-02	ci right 1.415410e-02	k: 53898	n:3840000
KS ci ratio: 3.492156e-01	ci left: 2.709614e-05	ci right 3.878422e-05	k: 125	n:3840000
FBXW7   3840000 perm   8130 sec   (472 perm/sec)   p_kst 3.255208e-05   p_cons 1.403594e-02   p_joint 4.453125e-05

Joint ci ratio: 2.988905e-01	ci left: 3.800792e-05	ci right 5.159419e-05	k: 171	n:3850000
Cons ci ratio: 1.674288e-02	ci left: 1.392064e-02	ci right 1.415593e-02	k: 54046	n:3850000
KS ci ratio: 3.492156e-01	ci left: 2.702576e-05	ci right 3.868348e-05	k: 125	n:3850000
FBXW7   3850000 perm   8168 sec   (471 perm/sec)   p_kst 3.246753e-05   p_cons 1.403792e-02   p_joint 4.441558e-05

Joint ci ratio: 2.988905e-01	ci left: 3.790945e-05	ci right 5.146053e-05	k: 171	n:3860000
Cons ci ratio: 1.672187e-02	ci left: 1.391966e-02	ci right 1.415464e-02	k: 54182	n:3860000
KS ci ratio: 3.492156e-01	ci left: 2.695574e-05	ci right 3.858326e-05	k: 125	n:3860000
FBXW7   3860000 perm   8207 sec   (470 perm/sec)   p_kst 3.238342e-05   p_cons 1.403679e-02   p_joint 4.430052e-05

Joint ci ratio: 2.971677e-01	ci left: 3.828966e-05	ci right 5.188287e-05	k: 173	n:3870000
Cons ci ratio: 1.669844e-02	ci left: 1.392281e-02	ci right 1.415751e-02	k: 54334	n:3870000
KS ci ratio: 3.492156e-01	ci left: 2.688609e-05	ci right 3.848356e-05	k: 125	n:3870000
FBXW7   3870000 perm   8245 sec   (469 perm/sec)   p_kst 3.229974e-05   p_cons 1.403979e-02   p_joint 4.470284e-05

Joint ci ratio: 2.971677e-01	ci left: 3.819097e-05	ci right 5.174915e-05	k: 173	n:3880000
Cons ci ratio: 1.667898e-02	ci left: 1.391952e-02	ci right 1.415389e-02	k: 54461	n:3880000
KS ci ratio: 3.492156e-01	ci left: 2.681680e-05	ci right 3.838438e-05	k: 125	n:3880000
FBXW7   3880000 perm   8283 sec   (468 perm/sec)   p_kst 3.221649e-05   p_cons 1.403634e-02   p_joint 4.458763e-05

Joint ci ratio: 2.971677e-01	ci left: 3.809279e-05	ci right 5.161612e-05	k: 173	n:3890000
Cons ci ratio: 1.665697e-02	ci left: 1.392060e-02	ci right 1.415467e-02	k: 54605	n:3890000
KS ci ratio: 3.492157e-01	ci left: 2.674786e-05	ci right 3.828571e-05	k: 125	n:3890000
FBXW7   3890000 perm   8322 sec   (467 perm/sec)   p_kst 3.213368e-05   p_cons 1.403728e-02   p_joint 4.447301e-05

Joint ci ratio: 2.971678e-01	ci left: 3.799512e-05	ci right 5.148378e-05	k: 173	n:3900000
Cons ci ratio: 1.663520e-02	ci left: 1.392142e-02	ci right 1.415520e-02	k: 54748	n:3900000
KS ci ratio: 3.492157e-01	ci left: 2.667927e-05	ci right 3.818754e-05	k: 125	n:3900000
FBXW7   3900000 perm   8361 sec   (466 perm/sec)   p_kst 3.205128e-05   p_cons 1.403795e-02   p_joint 4.435897e-05

Joint ci ratio: 2.971678e-01	ci left: 3.789795e-05	ci right 5.135210e-05	k: 173	n:3910000
Cons ci ratio: 1.661305e-02	ci left: 1.392300e-02	ci right 1.415649e-02	k: 54894	n:3910000
KS ci ratio: 3.492157e-01	ci left: 2.661104e-05	ci right 3.808987e-05	k: 125	n:3910000
FBXW7   3910000 perm   8400 sec   (465 perm/sec)   p_kst 3.196931e-05   p_cons 1.403939e-02   p_joint 4.424552e-05

Joint ci ratio: 3.033322e-01	ci left: 3.615003e-05	ci right 4.930130e-05	k: 166	n:3920000
Cons ci ratio: 1.659298e-02	ci left: 1.392127e-02	ci right 1.415445e-02	k: 55027	n:3920000
KS ci ratio: 3.492157e-01	ci left: 2.654315e-05	ci right 3.799270e-05	k: 125	n:3920000
FBXW7   3920000 perm   8438 sec   (465 perm/sec)   p_kst 3.188776e-05   p_cons 1.403750e-02   p_joint 4.234694e-05

Joint ci ratio: 3.033322e-01	ci left: 3.605805e-05	ci right 4.917585e-05	k: 166	n:3930000
Cons ci ratio: 1.657252e-02	ci left: 1.392031e-02	ci right 1.415318e-02	k: 55163	n:3930000
KS ci ratio: 3.492157e-01	ci left: 2.647561e-05	ci right 3.789603e-05	k: 125	n:3930000
FBXW7   3930000 perm   8477 sec   (464 perm/sec)   p_kst 3.180662e-05   p_cons 1.403639e-02   p_joint 4.223919e-05

Joint ci ratio: 3.033322e-01	ci left: 3.596653e-05	ci right 4.905104e-05	k: 166	n:3940000
Cons ci ratio: 1.655214e-02	ci left: 1.391935e-02	ci right 1.415192e-02	k: 55299	n:3940000
KS ci ratio: 3.492157e-01	ci left: 2.640842e-05	ci right 3.779985e-05	k: 125	n:3940000
FBXW7   3940000 perm   8515 sec   (463 perm/sec)   p_kst 3.172589e-05   p_cons 1.403528e-02   p_joint 4.213198e-05

Joint ci ratio: 3.033323e-01	ci left: 3.587547e-05	ci right 4.892686e-05	k: 166	n:3950000
Cons ci ratio: 1.653213e-02	ci left: 1.391790e-02	ci right 1.415016e-02	k: 55433	n:3950000
KS ci ratio: 3.492157e-01	ci left: 2.634156e-05	ci right 3.770415e-05	k: 125	n:3950000
FBXW7   3950000 perm   8554 sec   (462 perm/sec)   p_kst 3.164557e-05   p_cons 1.403367e-02   p_joint 4.202532e-05

Joint ci ratio: 3.024281e-01	ci left: 3.601822e-05	ci right 4.907496e-05	k: 167	n:3960000
Cons ci ratio: 1.651250e-02	ci left: 1.391595e-02	ci right 1.414789e-02	k: 55565	n:3960000
KS ci ratio: 3.492158e-01	ci left: 2.627504e-05	ci right 3.760894e-05	k: 125	n:3960000
FBXW7   3960000 perm   8593 sec   (461 perm/sec)   p_kst 3.156566e-05   p_cons 1.403157e-02   p_joint 4.217172e-05

Joint ci ratio: 3.024281e-01	ci left: 3.592749e-05	ci right 4.895135e-05	k: 167	n:3970000
Cons ci ratio: 1.649174e-02	ci left: 1.391601e-02	ci right 1.414767e-02	k: 55705	n:3970000
KS ci ratio: 3.492158e-01	ci left: 2.620886e-05	ci right 3.751421e-05	k: 125	n:3970000
FBXW7   3970000 perm   8632 sec   (460 perm/sec)   p_kst 3.148615e-05   p_cons 1.403149e-02   p_joint 4.206549e-05

Joint ci ratio: 3.024281e-01	ci left: 3.583722e-05	ci right 4.882836e-05	k: 167	n:3980000
Cons ci ratio: 1.647016e-02	ci left: 1.391758e-02	ci right 1.414896e-02	k: 55851	n:3980000
KS ci ratio: 3.492158e-01	ci left: 2.614301e-05	ci right 3.741995e-05	k: 125	n:3980000
FBXW7   3980000 perm   8671 sec   (459 perm/sec)   p_kst 3.140704e-05   p_cons 1.403291e-02   p_joint 4.195980e-05

Joint ci ratio: 3.024282e-01	ci left: 3.574740e-05	ci right 4.870598e-05	k: 167	n:3990000
Cons ci ratio: 1.644911e-02	ci left: 1.391839e-02	ci right 1.414948e-02	k: 55994	n:3990000
KS ci ratio: 3.492158e-01	ci left: 2.607748e-05	ci right 3.732617e-05	k: 125	n:3990000
FBXW7   3990000 perm   8710 sec   (458 perm/sec)   p_kst 3.132832e-05   p_cons 1.403358e-02   p_joint 4.185464e-05

Joint ci ratio: 3.024282e-01	ci left: 3.565803e-05	ci right 4.858422e-05	k: 167	n:4000000
Cons ci ratio: 1.642903e-02	ci left: 1.391771e-02	ci right 1.414850e-02	k: 56131	n:4000000
KS ci ratio: 3.492158e-01	ci left: 2.601229e-05	ci right 3.723285e-05	k: 125	n:4000000
FBXW7   4000000 perm   8749 sec   (457 perm/sec)   p_kst 3.125000e-05   p_cons 1.403275e-02   p_joint 4.175000e-05

Joint ci ratio: 3.024282e-01	ci left: 3.556911e-05	ci right 4.846306e-05	k: 167	n:4010000
Cons ci ratio: 1.640991e-02	ci left: 1.391553e-02	ci right 1.414602e-02	k: 56262	n:4010000
KS ci ratio: 3.492158e-01	ci left: 2.594742e-05	ci right 3.714000e-05	k: 125	n:4010000
FBXW7   4010000 perm   8788 sec   (456 perm/sec)   p_kst 3.117207e-05   p_cons 1.403042e-02   p_joint 4.164589e-05

Joint ci ratio: 3.024282e-01	ci left: 3.548063e-05	ci right 4.834251e-05	k: 167	n:4020000
Cons ci ratio: 1.638629e-02	ci left: 1.392105e-02	ci right 1.415129e-02	k: 56424	n:4020000
KS ci ratio: 3.492158e-01	ci left: 2.588287e-05	ci right 3.704762e-05	k: 125	n:4020000
FBXW7   4020000 perm   8828 sec   (455 perm/sec)   p_kst 3.109453e-05   p_cons 1.403582e-02   p_joint 4.154229e-05

Joint ci ratio: 3.015321e-01	ci left: 3.562193e-05	ci right 4.848943e-05	k: 168	n:4030000
Cons ci ratio: 1.636571e-02	ci left: 1.392160e-02	ci right 1.415156e-02	k: 56566	n:4030000
KS ci ratio: 3.492159e-01	ci left: 2.581865e-05	ci right 3.695569e-05	k: 125	n:4030000
FBXW7   4030000 perm   8868 sec   (454 perm/sec)   p_kst 3.101737e-05   p_cons 1.403623e-02   p_joint 4.168734e-05

Joint ci ratio: 3.015321e-01	ci left: 3.553376e-05	ci right 4.836941e-05	k: 168	n:4040000
Cons ci ratio: 1.634535e-02	ci left: 1.392190e-02	ci right 1.415157e-02	k: 56707	n:4040000
KS ci ratio: 3.492159e-01	ci left: 2.575474e-05	ci right 3.686421e-05	k: 125	n:4040000
FBXW7   4040000 perm   8908 sec   (454 perm/sec)   p_kst 3.094059e-05   p_cons 1.403639e-02   p_joint 4.158416e-05

Joint ci ratio: 3.015321e-01	ci left: 3.544602e-05	ci right 4.824998e-05	k: 168	n:4050000
Cons ci ratio: 1.632725e-02	ci left: 1.391851e-02	ci right 1.414787e-02	k: 56833	n:4050000
KS ci ratio: 3.492159e-01	ci left: 2.569115e-05	ci right 3.677319e-05	k: 125	n:4050000
FBXW7   4050000 perm   8949 sec   (453 perm/sec)   p_kst 3.086420e-05   p_cons 1.403284e-02   p_joint 4.148148e-05

Joint ci ratio: 3.015321e-01	ci left: 3.535871e-05	ci right 4.813114e-05	k: 168	n:4060000
Cons ci ratio: 1.630849e-02	ci left: 1.391636e-02	ci right 1.414542e-02	k: 56964	n:4060000
KS ci ratio: 3.492159e-01	ci left: 2.562787e-05	ci right 3.668262e-05	k: 125	n:4060000
FBXW7   4060000 perm   8990 sec   (452 perm/sec)   p_kst 3.078818e-05   p_cons 1.403054e-02   p_joint 4.137931e-05

Joint ci ratio: 3.015322e-01	ci left: 3.527184e-05	ci right 4.801288e-05	k: 168	n:4070000
Cons ci ratio: 1.628877e-02	ci left: 1.391593e-02	ci right 1.414471e-02	k: 57102	n:4070000
KS ci ratio: 3.492159e-01	ci left: 2.556490e-05	ci right 3.659249e-05	k: 125	n:4070000
FBXW7   4070000 perm   9031 sec   (451 perm/sec)   p_kst 3.071253e-05   p_cons 1.402998e-02   p_joint 4.127764e-05

Joint ci ratio: 3.033325e-01	ci left: 3.473238e-05	ci right 4.736792e-05	k: 166	n:4080000
Cons ci ratio: 1.626769e-02	ci left: 1.391795e-02	ci right 1.414646e-02	k: 57250	n:4080000
KS ci ratio: 3.478383e-01	ci left: 2.572589e-05	ci right 3.676927e-05	k: 126	n:4080000
FBXW7   4080000 perm   9072 sec   (450 perm/sec)   p_kst 3.088235e-05   p_cons 1.403186e-02   p_joint 4.068627e-05

Joint ci ratio: 3.033325e-01	ci left: 3.464746e-05	ci right 4.725211e-05	k: 166	n:4090000
Cons ci ratio: 1.624784e-02	ci left: 1.391801e-02	ci right 1.414624e-02	k: 57390	n:4090000
KS ci ratio: 3.478383e-01	ci left: 2.566299e-05	ci right 3.667937e-05	k: 126	n:4090000
FBXW7   4090000 perm   9113 sec   (449 perm/sec)   p_kst 3.080685e-05   p_cons 1.403178e-02   p_joint 4.058680e-05

Joint ci ratio: 3.033325e-01	ci left: 3.456295e-05	ci right 4.713686e-05	k: 166	n:4100000
Cons ci ratio: 1.623221e-02	ci left: 1.391103e-02	ci right 1.413892e-02	k: 57501	n:4100000
KS ci ratio: 3.478383e-01	ci left: 2.560040e-05	ci right 3.658991e-05	k: 126	n:4100000
FBXW7   4100000 perm   9154 sec   (448 perm/sec)   p_kst 3.073171e-05   p_cons 1.402463e-02   p_joint 4.048780e-05

Joint ci ratio: 3.033325e-01	ci left: 3.447886e-05	ci right 4.702217e-05	k: 166	n:4110000
Cons ci ratio: 1.621191e-02	ci left: 1.391208e-02	ci right 1.413970e-02	k: 57645	n:4110000
KS ci ratio: 3.478383e-01	ci left: 2.553811e-05	ci right 3.650088e-05	k: 126	n:4110000
FBXW7   4110000 perm   9194 sec   (447 perm/sec)   p_kst 3.065693e-05   p_cons 1.402555e-02   p_joint 4.038929e-05

Joint ci ratio: 3.024284e-01	ci left: 3.461945e-05	ci right 4.716915e-05	k: 167	n:4120000
Cons ci ratio: 1.619112e-02	ci left: 1.391409e-02	ci right 1.414145e-02	k: 57793	n:4120000
KS ci ratio: 3.478383e-01	ci left: 2.547612e-05	ci right 3.641229e-05	k: 126	n:4120000
FBXW7   4120000 perm   9235 sec   (446 perm/sec)   p_kst 3.058252e-05   p_cons 1.402743e-02   p_joint 4.053398e-05

Joint ci ratio: 3.015323e-01	ci left: 3.475941e-05	ci right 4.731536e-05	k: 168	n:4130000
Cons ci ratio: 1.617254e-02	ci left: 1.391247e-02	ci right 1.413954e-02	k: 57926	n:4130000
KS ci ratio: 3.478384e-01	ci left: 2.541444e-05	ci right 3.632412e-05	k: 126	n:4130000
FBXW7   4130000 perm   9276 sec   (445 perm/sec)   p_kst 3.050847e-05   p_cons 1.402567e-02   p_joint 4.067797e-05

Joint ci ratio: 3.006441e-01	ci left: 3.489875e-05	ci right 4.746080e-05	k: 169	n:4140000
Cons ci ratio: 1.615374e-02	ci left: 1.391134e-02	ci right 1.413813e-02	k: 58061	n:4140000
KS ci ratio: 3.464769e-01	ci left: 2.557354e-05	ci right 3.649890e-05	k: 127	n:4140000
FBXW7   4140000 perm   9318 sec   (444 perm/sec)   p_kst 3.067633e-05   p_cons 1.402440e-02   p_joint 4.082126e-05

Joint ci ratio: 2.988910e-01	ci left: 3.526035e-05	ci right 4.786450e-05	k: 171	n:4150000
Cons ci ratio: 1.613177e-02	ci left: 1.391574e-02	ci right 1.414229e-02	k: 58219	n:4150000
KS ci ratio: 3.464769e-01	ci left: 2.551191e-05	ci right 3.641096e-05	k: 127	n:4150000
FBXW7   4150000 perm   9359 sec   (443 perm/sec)   p_kst 3.060241e-05   p_cons 1.402867e-02   p_joint 4.120482e-05

Joint ci ratio: 2.971682e-01	ci left: 3.562042e-05	ci right 4.826605e-05	k: 173	n:4160000
Cons ci ratio: 1.611129e-02	ci left: 1.391772e-02	ci right 1.414401e-02	k: 58367	n:4160000
KS ci ratio: 3.438013e-01	ci left: 2.588969e-05	ci right 3.684571e-05	k: 129	n:4160000
FBXW7   4160000 perm   9401 sec   (443 perm/sec)   p_kst 3.100962e-05   p_cons 1.403053e-02   p_joint 4.158654e-05

Joint ci ratio: 2.963179e-01	ci left: 3.575696e-05	ci right 4.840791e-05	k: 174	n:4170000
Cons ci ratio: 1.609228e-02	ci left: 1.391731e-02	ci right 1.414332e-02	k: 58505	n:4170000
KS ci ratio: 3.424866e-01	ci left: 2.604674e-05	ci right 3.701774e-05	k: 130	n:4170000
FBXW7   4170000 perm   9442 sec   (442 perm/sec)   p_kst 3.117506e-05   p_cons 1.402998e-02   p_joint 4.172662e-05

Joint ci ratio: 2.963179e-01	ci left: 3.567141e-05	ci right 4.829210e-05	k: 174	n:4180000
Cons ci ratio: 1.607598e-02	ci left: 1.391237e-02	ci right 1.413807e-02	k: 58624	n:4180000
KS ci ratio: 3.424866e-01	ci left: 2.598443e-05	ci right 3.692919e-05	k: 130	n:4180000
FBXW7   4180000 perm   9483 sec   (441 perm/sec)   p_kst 3.110048e-05   p_cons 1.402488e-02   p_joint 4.162679e-05

Joint ci ratio: 2.963179e-01	ci left: 3.558628e-05	ci right 4.817685e-05	k: 174	n:4190000
Cons ci ratio: 1.605710e-02	ci left: 1.391197e-02	ci right 1.413739e-02	k: 58762	n:4190000
KS ci ratio: 3.424866e-01	ci left: 2.592242e-05	ci right 3.684105e-05	k: 130	n:4190000
FBXW7   4190000 perm   9525 sec   (440 perm/sec)   p_kst 3.102625e-05   p_cons 1.402434e-02   p_joint 4.152745e-05

Joint ci ratio: 2.963179e-01	ci left: 3.550155e-05	ci right 4.806214e-05	k: 174	n:4200000
Cons ci ratio: 1.604022e-02	ci left: 1.390825e-02	ci right 1.413338e-02	k: 58886	n:4200000
KS ci ratio: 3.424866e-01	ci left: 2.586070e-05	ci right 3.675333e-05	k: 130	n:4200000
FBXW7   4200000 perm   9566 sec   (439 perm/sec)   p_kst 3.095238e-05   p_cons 1.402048e-02   p_joint 4.142857e-05

Joint ci ratio: 2.954749e-01	ci left: 3.563712e-05	ci right 4.820309e-05	k: 175	n:4210000
Cons ci ratio: 1.602049e-02	ci left: 1.390952e-02	ci right 1.413438e-02	k: 59031	n:4210000
KS ci ratio: 3.411868e-01	ci left: 2.601641e-05	ci right 3.692387e-05	k: 131	n:4210000
FBXW7   4210000 perm   9608 sec   (438 perm/sec)   p_kst 3.111639e-05   p_cons 1.402162e-02   p_joint 4.156770e-05

Joint ci ratio: 2.954749e-01	ci left: 3.555267e-05	ci right 4.808886e-05	k: 175	n:4220000
Cons ci ratio: 1.600441e-02	ci left: 1.390464e-02	ci right 1.412920e-02	k: 59150	n:4220000
KS ci ratio: 3.411868e-01	ci left: 2.595476e-05	ci right 3.683638e-05	k: 131	n:4220000
FBXW7   4220000 perm   9650 sec   (437 perm/sec)   p_kst 3.104265e-05   p_cons 1.401659e-02   p_joint 4.146919e-05

Joint ci ratio: 2.954749e-01	ci left: 3.546863e-05	ci right 4.797518e-05	k: 175	n:4230000
Cons ci ratio: 1.598482e-02	ci left: 1.390591e-02	ci right 1.413022e-02	k: 59295	n:4230000
KS ci ratio: 3.411868e-01	ci left: 2.589340e-05	ci right 3.674929e-05	k: 131	n:4230000
FBXW7   4230000 perm   9692 sec   (436 perm/sec)   p_kst 3.096927e-05   p_cons 1.401773e-02   p_joint 4.137116e-05

Joint ci ratio: 2.954750e-01	ci left: 3.538497e-05	ci right 4.786203e-05	k: 175	n:4240000
Cons ci ratio: 1.596639e-02	ci left: 1.390530e-02	ci right 1.412933e-02	k: 59432	n:4240000
KS ci ratio: 3.411869e-01	ci left: 2.583233e-05	ci right 3.666262e-05	k: 131	n:4240000
FBXW7   4240000 perm   9734 sec   (436 perm/sec)   p_kst 3.089623e-05   p_cons 1.401698e-02   p_joint 4.127358e-05

Joint ci ratio: 2.946391e-01	ci left: 3.551960e-05	ci right 4.800207e-05	k: 176	n:4250000
Cons ci ratio: 1.594477e-02	ci left: 1.391031e-02	ci right 1.413412e-02	k: 59593	n:4250000
KS ci ratio: 3.399017e-01	ci left: 2.598672e-05	ci right 3.683170e-05	k: 132	n:4250000
FBXW7   4250000 perm   9778 sec   (435 perm/sec)   p_kst 3.105882e-05   p_cons 1.402188e-02   p_joint 4.141176e-05

Joint ci ratio: 2.929884e-01	ci left: 3.587110e-05	ci right 4.839338e-05	k: 178	n:4260000
Cons ci ratio: 1.592824e-02	ci left: 1.390665e-02	ci right 1.413016e-02	k: 59717	n:4260000
KS ci ratio: 3.386311e-01	ci left: 2.614047e-05	ci right 3.699990e-05	k: 133	n:4260000
FBXW7   4260000 perm   9822 sec   (434 perm/sec)   p_kst 3.122066e-05   p_cons 1.401808e-02   p_joint 4.178404e-05

Joint ci ratio: 2.929884e-01	ci left: 3.578710e-05	ci right 4.828004e-05	k: 178	n:4270000
Cons ci ratio: 1.590502e-02	ci left: 1.391467e-02	ci right 1.413798e-02	k: 59891	n:4270000
KS ci ratio: 3.386311e-01	ci left: 2.607925e-05	ci right 3.691325e-05	k: 133	n:4270000
FBXW7   4270000 perm   9864 sec   (433 perm/sec)   p_kst 3.114754e-05   p_cons 1.402600e-02   p_joint 4.168618e-05

Joint ci ratio: 2.921734e-01	ci left: 3.591998e-05	ci right 4.841798e-05	k: 179	n:4280000
Cons ci ratio: 1.588660e-02	ci left: 1.391450e-02	ci right 1.413756e-02	k: 60030	n:4280000
KS ci ratio: 3.386311e-01	ci left: 2.601832e-05	ci right 3.682700e-05	k: 133	n:4280000
FBXW7   4280000 perm   9907 sec   (432 perm/sec)   p_kst 3.107477e-05   p_cons 1.402570e-02   p_joint 4.182243e-05

Joint ci ratio: 2.921734e-01	ci left: 3.583625e-05	ci right 4.830512e-05	k: 179	n:4290000
Cons ci ratio: 1.586838e-02	ci left: 1.391411e-02	ci right 1.413690e-02	k: 60168	n:4290000
KS ci ratio: 3.386311e-01	ci left: 2.595767e-05	ci right 3.674116e-05	k: 133	n:4290000
FBXW7   4290000 perm   9950 sec   (431 perm/sec)   p_kst 3.100233e-05   p_cons 1.402517e-02   p_joint 4.172494e-05

Joint ci ratio: 2.913651e-01	ci left: 3.596845e-05	ci right 4.844231e-05	k: 180	n:4300000
Cons ci ratio: 1.585075e-02	ci left: 1.391279e-02	ci right 1.413531e-02	k: 60302	n:4300000
KS ci ratio: 3.386311e-01	ci left: 2.589730e-05	ci right 3.665572e-05	k: 133	n:4300000
FBXW7   4300000 perm   9994 sec   (430 perm/sec)   p_kst 3.093023e-05   p_cons 1.402372e-02   p_joint 4.186047e-05

Joint ci ratio: 2.905636e-01	ci left: 3.610008e-05	ci right 4.857882e-05	k: 181	n:4310000
Cons ci ratio: 1.583265e-02	ci left: 1.391240e-02	ci right 1.413466e-02	k: 60440	n:4310000
KS ci ratio: 3.386311e-01	ci left: 2.583721e-05	ci right 3.657067e-05	k: 133	n:4310000
FBXW7   4310000 perm   10036 sec   (429 perm/sec)   p_kst 3.085847e-05   p_cons 1.402320e-02   p_joint 4.199536e-05

Joint ci ratio: 2.905636e-01	ci left: 3.601652e-05	ci right 4.846637e-05	k: 181	n:4320000
Cons ci ratio: 1.581474e-02	ci left: 1.391178e-02	ci right 1.413378e-02	k: 60577	n:4320000
KS ci ratio: 3.386311e-01	ci left: 2.577740e-05	ci right 3.648601e-05	k: 133	n:4320000
FBXW7   4320000 perm   10080 sec   (429 perm/sec)   p_kst 3.078704e-05   p_cons 1.402245e-02   p_joint 4.189815e-05

Joint ci ratio: 2.905636e-01	ci left: 3.593334e-05	ci right 4.835444e-05	k: 181	n:4330000
Cons ci ratio: 1.579531e-02	ci left: 1.391393e-02	ci right 1.413568e-02	k: 60726	n:4330000
KS ci ratio: 3.386311e-01	ci left: 2.571787e-05	ci right 3.640175e-05	k: 133	n:4330000
FBXW7   4330000 perm   10127 sec   (428 perm/sec)   p_kst 3.071594e-05   p_cons 1.402448e-02   p_joint 4.180139e-05

Joint ci ratio: 2.897686e-01	ci left: 3.606419e-05	ci right 4.849016e-05	k: 182	n:4340000
Cons ci ratio: 1.577950e-02	ci left: 1.390987e-02	ci right 1.413133e-02	k: 60848	n:4340000
KS ci ratio: 3.373746e-01	ci left: 2.586947e-05	ci right 3.656777e-05	k: 134	n:4340000
FBXW7   4340000 perm   10172 sec   (427 perm/sec)   p_kst 3.087558e-05   p_cons 1.402028e-02   p_joint 4.193548e-05

Joint ci ratio: 2.897686e-01	ci left: 3.598129e-05	ci right 4.837869e-05	k: 182	n:4350000
Cons ci ratio: 1.576400e-02	ci left: 1.390537e-02	ci right 1.412654e-02	k: 60968	n:4350000
KS ci ratio: 3.373746e-01	ci left: 2.581000e-05	ci right 3.648371e-05	k: 134	n:4350000
FBXW7   4350000 perm   10221 sec   (426 perm/sec)   p_kst 3.080460e-05   p_cons 1.401563e-02   p_joint 4.183908e-05

Joint ci ratio: 2.897686e-01	ci left: 3.589876e-05	ci right 4.826773e-05	k: 182	n:4360000
Cons ci ratio: 1.574802e-02	ci left: 1.390181e-02	ci right 1.412269e-02	k: 61092	n:4360000
KS ci ratio: 3.373746e-01	ci left: 2.575081e-05	ci right 3.640003e-05	k: 134	n:4360000
FBXW7   4360000 perm   10269 sec   (425 perm/sec)   p_kst 3.073394e-05   p_cons 1.401193e-02   p_joint 4.174312e-05

Joint ci ratio: 2.889801e-01	ci left: 3.602884e-05	ci right 4.840267e-05	k: 183	n:4370000
Cons ci ratio: 1.572949e-02	ci left: 1.390282e-02	ci right 1.412346e-02	k: 61236	n:4370000
KS ci ratio: 3.361320e-01	ci left: 2.590137e-05	ci right 3.656485e-05	k: 135	n:4370000
FBXW7   4370000 perm   10312 sec   (424 perm/sec)   p_kst 3.089245e-05   p_cons 1.401281e-02   p_joint 4.187643e-05

Joint ci ratio: 2.881980e-01	ci left: 3.615837e-05	ci right 4.853695e-05	k: 184	n:4380000
Cons ci ratio: 1.570998e-02	ci left: 1.390564e-02	ci right 1.412605e-02	k: 61388	n:4380000
KS ci ratio: 3.349029e-01	ci left: 2.605131e-05	ci right 3.672884e-05	k: 136	n:4380000
FBXW7   4380000 perm   10359 sec   (423 perm/sec)   p_kst 3.105023e-05   p_cons 1.401553e-02   p_joint 4.200913e-05

Joint ci ratio: 2.881980e-01	ci left: 3.607600e-05	ci right 4.842639e-05	k: 184	n:4390000
Cons ci ratio: 1.569352e-02	ci left: 1.390324e-02	ci right 1.412337e-02	k: 61517	n:4390000
KS ci ratio: 3.349029e-01	ci left: 2.599197e-05	ci right 3.664518e-05	k: 136	n:4390000
FBXW7   4390000 perm   10403 sec   (422 perm/sec)   p_kst 3.097950e-05   p_cons 1.401298e-02   p_joint 4.191344e-05

Joint ci ratio: 2.881980e-01	ci left: 3.599401e-05	ci right 4.831633e-05	k: 184	n:4400000
Cons ci ratio: 1.567467e-02	ci left: 1.390514e-02	ci right 1.412504e-02	k: 61665	n:4400000
KS ci ratio: 3.349029e-01	ci left: 2.593289e-05	ci right 3.656189e-05	k: 136	n:4400000
FBXW7   4400000 perm   10448 sec   (421 perm/sec)   p_kst 3.090909e-05   p_cons 1.401477e-02   p_joint 4.181818e-05

Joint ci ratio: 2.881981e-01	ci left: 3.591239e-05	ci right 4.820677e-05	k: 184	n:4410000
Cons ci ratio: 1.565600e-02	ci left: 1.390681e-02	ci right 1.412648e-02	k: 61812	n:4410000
KS ci ratio: 3.349030e-01	ci left: 2.587409e-05	ci right 3.647898e-05	k: 136	n:4410000
FBXW7   4410000 perm   10497 sec   (420 perm/sec)   p_kst 3.083900e-05   p_cons 1.401633e-02   p_joint 4.172336e-05

Joint ci ratio: 2.881981e-01	ci left: 3.583114e-05	ci right 4.809771e-05	k: 184	n:4420000
Cons ci ratio: 1.563958e-02	ci left: 1.390465e-02	ci right 1.412404e-02	k: 61942	n:4420000
KS ci ratio: 3.349030e-01	ci left: 2.581555e-05	ci right 3.639645e-05	k: 136	n:4420000
FBXW7   4420000 perm   10545 sec   (419 perm/sec)   p_kst 3.076923e-05   p_cons 1.401403e-02   p_joint 4.162896e-05

Joint ci ratio: 2.874223e-01	ci left: 3.595970e-05	ci right 4.823112e-05	k: 185	n:4430000
Cons ci ratio: 1.562411e-02	ci left: 1.390092e-02	ci right 1.412004e-02	k: 62065	n:4430000
KS ci ratio: 3.336873e-01	ci left: 2.596406e-05	ci right 3.655890e-05	k: 137	n:4430000
FBXW7   4430000 perm   10592 sec   (418 perm/sec)   p_kst 3.092551e-05   p_cons 1.401016e-02   p_joint 4.176072e-05

Joint ci ratio: 2.874223e-01	ci left: 3.587871e-05	ci right 4.812249e-05	k: 185	n:4440000
Cons ci ratio: 1.560385e-02	ci left: 1.390573e-02	ci right 1.412464e-02	k: 62226	n:4440000
KS ci ratio: 3.336873e-01	ci left: 2.590559e-05	ci right 3.647657e-05	k: 137	n:4440000
FBXW7   4440000 perm   10641 sec   (417 perm/sec)   p_kst 3.085586e-05   p_cons 1.401486e-02   p_joint 4.166667e-05

Joint ci ratio: 2.874223e-01	ci left: 3.579808e-05	ci right 4.801435e-05	k: 185	n:4450000
Cons ci ratio: 1.558595e-02	ci left: 1.390649e-02	ci right 1.412516e-02	k: 62369	n:4450000
KS ci ratio: 3.336873e-01	ci left: 2.584737e-05	ci right 3.639460e-05	k: 137	n:4450000
FBXW7   4450000 perm   10689 sec   (416 perm/sec)   p_kst 3.078652e-05   p_cons 1.401551e-02   p_joint 4.157303e-05

Joint ci ratio: 2.874223e-01	ci left: 3.571782e-05	ci right 4.790669e-05	k: 185	n:4460000
Cons ci ratio: 1.556873e-02	ci left: 1.390613e-02	ci right 1.412455e-02	k: 62507	n:4460000
KS ci ratio: 3.336874e-01	ci left: 2.578942e-05	ci right 3.631299e-05	k: 137	n:4460000
FBXW7   4460000 perm   10739 sec   (415 perm/sec)   p_kst 3.071749e-05   p_cons 1.401502e-02   p_joint 4.147982e-05

Joint ci ratio: 2.874223e-01	ci left: 3.563791e-05	ci right 4.779952e-05	k: 185	n:4470000
Cons ci ratio: 1.555133e-02	ci left: 1.390622e-02	ci right 1.412439e-02	k: 62647	n:4470000
KS ci ratio: 3.336874e-01	ci left: 2.573172e-05	ci right 3.623176e-05	k: 137	n:4470000
FBXW7   4470000 perm   10786 sec   (414 perm/sec)   p_kst 3.064877e-05   p_cons 1.401499e-02   p_joint 4.138702e-05

Joint ci ratio: 2.874223e-01	ci left: 3.555836e-05	ci right 4.769282e-05	k: 185	n:4480000
Cons ci ratio: 1.553549e-02	ci left: 1.390364e-02	ci right 1.412155e-02	k: 62775	n:4480000
KS ci ratio: 3.336874e-01	ci left: 2.567429e-05	ci right 3.615088e-05	k: 137	n:4480000
FBXW7   4480000 perm   10836 sec   (413 perm/sec)   p_kst 3.058036e-05   p_cons 1.401228e-02   p_joint 4.129464e-05

Joint ci ratio: 2.874224e-01	ci left: 3.547917e-05	ci right 4.758660e-05	k: 185	n:4490000
Cons ci ratio: 1.551794e-02	ci left: 1.390417e-02	ci right 1.412184e-02	k: 62917	n:4490000
KS ci ratio: 3.336874e-01	ci left: 2.561711e-05	ci right 3.607037e-05	k: 137	n:4490000
FBXW7   4490000 perm   10884 sec   (413 perm/sec)   p_kst 3.051225e-05   p_cons 1.401269e-02   p_joint 4.120267e-05

Joint ci ratio: 2.874224e-01	ci left: 3.540032e-05	ci right 4.748086e-05	k: 185	n:4500000
Cons ci ratio: 1.549909e-02	ci left: 1.390714e-02	ci right 1.412459e-02	k: 63070	n:4500000
KS ci ratio: 3.336874e-01	ci left: 2.556018e-05	ci right 3.599021e-05	k: 137	n:4500000
FBXW7   4500000 perm   10929 sec   (412 perm/sec)   p_kst 3.044444e-05   p_cons 1.401556e-02   p_joint 4.111111e-05

Joint ci ratio: 2.866528e-01	ci left: 3.552760e-05	ci right 4.761323e-05	k: 186	n:4510000
Cons ci ratio: 1.548067e-02	ci left: 1.390944e-02	ci right 1.412666e-02	k: 63220	n:4510000
KS ci ratio: 3.324849e-01	ci left: 2.570669e-05	ci right 3.615062e-05	k: 138	n:4510000
FBXW7   4510000 perm   10975 sec   (411 perm/sec)   p_kst 3.059867e-05   p_cons 1.401774e-02   p_joint 4.124169e-05

Joint ci ratio: 2.858894e-01	ci left: 3.565436e-05	ci right 4.774497e-05	k: 187	n:4520000
Cons ci ratio: 1.546232e-02	ci left: 1.391172e-02	ci right 1.412872e-02	k: 63370	n:4520000
KS ci ratio: 3.312953e-01	ci left: 2.585263e-05	ci right 3.631024e-05	k: 139	n:4520000
FBXW7   4520000 perm   11023 sec   (410 perm/sec)   p_kst 3.075221e-05   p_cons 1.401991e-02   p_joint 4.137168e-05

Joint ci ratio: 2.858894e-01	ci left: 3.557565e-05	ci right 4.763957e-05	k: 187	n:4530000
Cons ci ratio: 1.544503e-02	ci left: 1.391224e-02	ci right 1.412900e-02	k: 63512	n:4530000
KS ci ratio: 3.312953e-01	ci left: 2.579556e-05	ci right 3.623009e-05	k: 139	n:4530000
FBXW7   4530000 perm   11070 sec   (409 perm/sec)   p_kst 3.068433e-05   p_cons 1.402031e-02   p_joint 4.128035e-05

Joint ci ratio: 2.858894e-01	ci left: 3.549729e-05	ci right 4.753464e-05	k: 187	n:4540000
Cons ci ratio: 1.542791e-02	ci left: 1.391253e-02	ci right 1.412906e-02	k: 63653	n:4540000
KS ci ratio: 3.312953e-01	ci left: 2.573874e-05	ci right 3.615029e-05	k: 139	n:4540000
FBXW7   4540000 perm   11116 sec   (408 perm/sec)   p_kst 3.061674e-05   p_cons 1.402048e-02   p_joint 4.118943e-05

Joint ci ratio: 2.858894e-01	ci left: 3.541927e-05	ci right 4.743017e-05	k: 187	n:4550000
Cons ci ratio: 1.541146e-02	ci left: 1.391173e-02	ci right 1.412801e-02	k: 63789	n:4550000
KS ci ratio: 3.312953e-01	ci left: 2.568217e-05	ci right 3.607084e-05	k: 139	n:4550000
FBXW7   4550000 perm   11162 sec   (408 perm/sec)   p_kst 3.054945e-05   p_cons 1.401956e-02   p_joint 4.109890e-05

Joint ci ratio: 2.858895e-01	ci left: 3.534160e-05	ci right 4.732615e-05	k: 187	n:4560000
Cons ci ratio: 1.539385e-02	ci left: 1.391312e-02	ci right 1.412917e-02	k: 63935	n:4560000
KS ci ratio: 3.312953e-01	ci left: 2.562585e-05	ci right 3.599173e-05	k: 139	n:4560000
FBXW7   4560000 perm   11210 sec   (407 perm/sec)   p_kst 3.048246e-05   p_cons 1.402083e-02   p_joint 4.100877e-05

Joint ci ratio: 2.851321e-01	ci left: 3.546742e-05	ci right 4.745704e-05	k: 188	n:4570000
Cons ci ratio: 1.537519e-02	ci left: 1.391646e-02	ci right 1.413230e-02	k: 64090	n:4570000
KS ci ratio: 3.312954e-01	ci left: 2.556977e-05	ci right 3.591298e-05	k: 139	n:4570000
FBXW7   4570000 perm   11258 sec   (406 perm/sec)   p_kst 3.041575e-05   p_cons 1.402407e-02   p_joint 4.113786e-05

Joint ci ratio: 2.843808e-01	ci left: 3.559273e-05	ci right 4.758731e-05	k: 189	n:4580000
Cons ci ratio: 1.535552e-02	ci left: 1.392174e-02	ci right 1.413739e-02	k: 64254	n:4580000
KS ci ratio: 3.312954e-01	ci left: 2.551394e-05	ci right 3.583457e-05	k: 139	n:4580000
FBXW7   4580000 perm   11307 sec   (405 perm/sec)   p_kst 3.034934e-05   p_cons 1.402926e-02   p_joint 4.126638e-05

Joint ci ratio: 2.843808e-01	ci left: 3.551518e-05	ci right 4.748363e-05	k: 189	n:4590000
Cons ci ratio: 1.533930e-02	ci left: 1.392093e-02	ci right 1.413633e-02	k: 64390	n:4590000
KS ci ratio: 3.312954e-01	ci left: 2.545836e-05	ci right 3.575649e-05	k: 139	n:4590000
FBXW7   4590000 perm   11356 sec   (404 perm/sec)   p_kst 3.028322e-05   p_cons 1.402832e-02   p_joint 4.117647e-05

Joint ci ratio: 2.843808e-01	ci left: 3.543797e-05	ci right 4.738041e-05	k: 189	n:4600000
Cons ci ratio: 1.532193e-02	ci left: 1.392228e-02	ci right 1.413746e-02	k: 64536	n:4600000
KS ci ratio: 3.312954e-01	ci left: 2.540301e-05	ci right 3.567876e-05	k: 139	n:4600000
FBXW7   4600000 perm   11403 sec   (403 perm/sec)   p_kst 3.021739e-05   p_cons 1.402957e-02   p_joint 4.108696e-05

Joint ci ratio: 2.836353e-01	ci left: 3.556257e-05	ci right 4.750996e-05	k: 190	n:4610000
Cons ci ratio: 1.530294e-02	ci left: 1.392666e-02	ci right 1.414163e-02	k: 64696	n:4610000
KS ci ratio: 3.301185e-01	ci left: 2.554682e-05	ci right 3.583623e-05	k: 140	n:4610000
FBXW7   4610000 perm   11450 sec   (403 perm/sec)   p_kst 3.036876e-05   p_cons 1.403384e-02   p_joint 4.121475e-05

Joint ci ratio: 2.836354e-01	ci left: 3.548560e-05	ci right 4.740713e-05	k: 190	n:4620000
Cons ci ratio: 1.528665e-02	ci left: 1.392627e-02	ci right 1.414101e-02	k: 64834	n:4620000
KS ci ratio: 3.301185e-01	ci left: 2.549152e-05	ci right 3.575867e-05	k: 140	n:4620000
FBXW7   4620000 perm   11496 sec   (402 perm/sec)   p_kst 3.030303e-05   p_cons 1.403333e-02   p_joint 4.112554e-05

Joint ci ratio: 2.836354e-01	ci left: 3.540895e-05	ci right 4.730473e-05	k: 190	n:4630000
Cons ci ratio: 1.526982e-02	ci left: 1.392696e-02	ci right 1.414147e-02	k: 64977	n:4630000
KS ci ratio: 3.301185e-01	ci left: 2.543647e-05	ci right 3.568143e-05	k: 140	n:4630000
FBXW7   4630000 perm   11546 sec   (401 perm/sec)   p_kst 3.023758e-05   p_cons 1.403391e-02   p_joint 4.103672e-05

Joint ci ratio: 2.836354e-01	ci left: 3.533264e-05	ci right 4.720278e-05	k: 190	n:4640000
Cons ci ratio: 1.525553e-02	ci left: 1.392314e-02	ci right 1.413738e-02	k: 65099	n:4640000
KS ci ratio: 3.301185e-01	ci left: 2.538165e-05	ci right 3.560453e-05	k: 140	n:4640000
FBXW7   4640000 perm   11597 sec   (400 perm/sec)   p_kst 3.017241e-05   p_cons 1.402996e-02   p_joint 4.094828e-05

Joint ci ratio: 2.828958e-01	ci left: 3.545644e-05	ci right 4.733156e-05	k: 191	n:4650000
Cons ci ratio: 1.523856e-02	ci left: 1.392426e-02	ci right 1.413828e-02	k: 65244	n:4650000
KS ci ratio: 3.301185e-01	ci left: 2.532706e-05	ci right 3.552797e-05	k: 140	n:4650000
FBXW7   4650000 perm   11647 sec   (399 perm/sec)   p_kst 3.010753e-05   p_cons 1.403097e-02   p_joint 4.107527e-05

Joint ci ratio: 2.821619e-01	ci left: 3.557974e-05	ci right 4.745975e-05	k: 192	n:4660000
Cons ci ratio: 1.522401e-02	ci left: 1.392110e-02	ci right 1.413487e-02	k: 65369	n:4660000
KS ci ratio: 3.301185e-01	ci left: 2.527271e-05	ci right 3.545173e-05	k: 140	n:4660000
FBXW7   4660000 perm   11696 sec   (398 perm/sec)   p_kst 3.004292e-05   p_cons 1.402768e-02   p_joint 4.120172e-05

Joint ci ratio: 2.821619e-01	ci left: 3.550355e-05	ci right 4.735812e-05	k: 192	n:4670000
Cons ci ratio: 1.520809e-02	ci left: 1.392051e-02	ci right 1.413405e-02	k: 65506	n:4670000
KS ci ratio: 3.301185e-01	ci left: 2.521860e-05	ci right 3.537581e-05	k: 140	n:4670000
FBXW7   4670000 perm   11746 sec   (398 perm/sec)   p_kst 2.997859e-05   p_cons 1.402698e-02   p_joint 4.111349e-05

Joint ci ratio: 2.821619e-01	ci left: 3.542769e-05	ci right 4.725693e-05	k: 192	n:4680000
Cons ci ratio: 1.519327e-02	ci left: 1.391802e-02	ci right 1.413130e-02	k: 65634	n:4680000
KS ci ratio: 3.301185e-01	ci left: 2.516471e-05	ci right 3.530022e-05	k: 140	n:4680000
FBXW7   4680000 perm   11795 sec   (397 perm/sec)   p_kst 2.991453e-05   p_cons 1.402436e-02   p_joint 4.102564e-05

Joint ci ratio: 2.821619e-01	ci left: 3.535215e-05	ci right 4.715617e-05	k: 192	n:4690000
Cons ci ratio: 1.517756e-02	ci left: 1.391723e-02	ci right 1.413028e-02	k: 65770	n:4690000
KS ci ratio: 3.301186e-01	ci left: 2.511105e-05	ci right 3.522496e-05	k: 140	n:4690000
FBXW7   4690000 perm   11841 sec   (396 perm/sec)   p_kst 2.985075e-05   p_cons 1.402345e-02   p_joint 4.093817e-05

Joint ci ratio: 2.814338e-01	ci left: 3.547466e-05	ci right 4.728360e-05	k: 193	n:4700000
Cons ci ratio: 1.516225e-02	ci left: 1.391581e-02	ci right 1.412862e-02	k: 65903	n:4700000
KS ci ratio: 3.278018e-01	ci left: 2.544802e-05	ci right 3.561056e-05	k: 142	n:4700000
FBXW7   4700000 perm   11888 sec   (395 perm/sec)   p_kst 3.021277e-05   p_cons 1.402191e-02   p_joint 4.106383e-05

Joint ci ratio: 2.814338e-01	ci left: 3.539935e-05	ci right 4.718321e-05	k: 193	n:4710000
Cons ci ratio: 1.514559e-02	ci left: 1.391693e-02	ci right 1.412953e-02	k: 66048	n:4710000
KS ci ratio: 3.278019e-01	ci left: 2.539399e-05	ci right 3.553495e-05	k: 142	n:4710000
FBXW7   4710000 perm   11940 sec   (394 perm/sec)   p_kst 3.014862e-05   p_cons 1.402293e-02   p_joint 4.097665e-05

Joint ci ratio: 2.807112e-01	ci left: 3.552128e-05	ci right 4.731000e-05	k: 194	n:4720000
Cons ci ratio: 1.512968e-02	ci left: 1.391678e-02	ci right 1.412915e-02	k: 66187	n:4720000
KS ci ratio: 3.278019e-01	ci left: 2.534019e-05	ci right 3.545967e-05	k: 142	n:4720000
FBXW7   4720000 perm   11988 sec   (394 perm/sec)   p_kst 3.008475e-05   p_cons 1.402267e-02   p_joint 4.110169e-05

Joint ci ratio: 2.807112e-01	ci left: 3.544618e-05	ci right 4.720998e-05	k: 194	n:4730000
Cons ci ratio: 1.511382e-02	ci left: 1.391664e-02	ci right 1.412878e-02	k: 66326	n:4730000
KS ci ratio: 3.278019e-01	ci left: 2.528661e-05	ci right 3.538470e-05	k: 142	n:4730000
FBXW7   4730000 perm   12035 sec   (393 perm/sec)   p_kst 3.002114e-05   p_cons 1.402241e-02   p_joint 4.101480e-05

Joint ci ratio: 2.807112e-01	ci left: 3.537140e-05	ci right 4.711038e-05	k: 194	n:4740000
Cons ci ratio: 1.509790e-02	ci left: 1.391670e-02	ci right 1.412862e-02	k: 66466	n:4740000
KS ci ratio: 3.278019e-01	ci left: 2.523327e-05	ci right 3.531005e-05	k: 142	n:4740000
FBXW7   4740000 perm   12084 sec   (392 perm/sec)   p_kst 2.995781e-05   p_cons 1.402236e-02   p_joint 4.092827e-05

Joint ci ratio: 2.807112e-01	ci left: 3.529694e-05	ci right 4.701120e-05	k: 194	n:4750000
Cons ci ratio: 1.507984e-02	ci left: 1.392075e-02	ci right 1.413247e-02	k: 66625	n:4750000
KS ci ratio: 3.278019e-01	ci left: 2.518014e-05	ci right 3.523571e-05	k: 142	n:4750000
FBXW7   4750000 perm   12131 sec   (392 perm/sec)   p_kst 2.989474e-05   p_cons 1.402632e-02   p_joint 4.084211e-05

Joint ci ratio: 2.807113e-01	ci left: 3.522278e-05	ci right 4.691244e-05	k: 194	n:4760000
Cons ci ratio: 1.506379e-02	ci left: 1.392122e-02	ci right 1.413273e-02	k: 66767	n:4760000
KS ci ratio: 3.278019e-01	ci left: 2.512724e-05	ci right 3.516169e-05	k: 142	n:4760000
FBXW7   4760000 perm   12178 sec   (391 perm/sec)   p_kst 2.983193e-05   p_cons 1.402668e-02   p_joint 4.075630e-05

Joint ci ratio: 2.799942e-01	ci left: 3.534385e-05	ci right 4.703844e-05	k: 195	n:4770000
Cons ci ratio: 1.504780e-02	ci left: 1.392170e-02	ci right 1.413298e-02	k: 66909	n:4770000
KS ci ratio: 3.266617e-01	ci left: 2.526699e-05	ci right 3.531478e-05	k: 143	n:4770000
FBXW7   4770000 perm   12225 sec   (390 perm/sec)   p_kst 2.997904e-05   p_cons 1.402704e-02   p_joint 4.088050e-05

Joint ci ratio: 2.821620e-01	ci left: 3.468652e-05	ci right 4.626829e-05	k: 192	n:4780000
Cons ci ratio: 1.503083e-02	ci left: 1.392404e-02	ci right 1.413512e-02	k: 67060	n:4780000
KS ci ratio: 3.266617e-01	ci left: 2.521413e-05	ci right 3.524090e-05	k: 143	n:4780000
FBXW7   4780000 perm   12272 sec   (390 perm/sec)   p_kst 2.991632e-05   p_cons 1.402929e-02   p_joint 4.016736e-05

Joint ci ratio: 2.821621e-01	ci left: 3.461411e-05	ci right 4.617170e-05	k: 192	n:4790000
Cons ci ratio: 1.501573e-02	ci left: 1.392305e-02	ci right 1.413390e-02	k: 67195	n:4790000
KS ci ratio: 3.266617e-01	ci left: 2.516149e-05	ci right 3.516733e-05	k: 143	n:4790000
FBXW7   4790000 perm   12319 sec   (389 perm/sec)   p_kst 2.985386e-05   p_cons 1.402818e-02   p_joint 4.008351e-05

Joint ci ratio: 2.821621e-01	ci left: 3.454199e-05	ci right 4.607551e-05	k: 192	n:4800000
Cons ci ratio: 1.499842e-02	ci left: 1.392622e-02	ci right 1.413687e-02	k: 67350	n:4800000
KS ci ratio: 3.266617e-01	ci left: 2.510907e-05	ci right 3.509406e-05	k: 143	n:4800000
FBXW7   4800000 perm   12367 sec   (388 perm/sec)   p_kst 2.979167e-05   p_cons 1.403125e-02   p_joint 4.000000e-05

Joint ci ratio: 2.821621e-01	ci left: 3.447018e-05	ci right 4.597972e-05	k: 192	n:4810000
Cons ci ratio: 1.498139e-02	ci left: 1.392895e-02	ci right 1.413941e-02	k: 67503	n:4810000
KS ci ratio: 3.266617e-01	ci left: 2.505687e-05	ci right 3.502110e-05	k: 143	n:4810000
FBXW7   4810000 perm   12415 sec   (387 perm/sec)   p_kst 2.972973e-05   p_cons 1.403389e-02   p_joint 3.991684e-05

Joint ci ratio: 2.843811e-01	ci left: 3.382047e-05	ci right 4.521782e-05	k: 189	n:4820000
Cons ci ratio: 1.496835e-02	ci left: 1.392445e-02	ci right 1.413465e-02	k: 67621	n:4820000
KS ci ratio: 3.266618e-01	ci left: 2.500488e-05	ci right 3.494844e-05	k: 143	n:4820000
FBXW7   4820000 perm   12461 sec   (387 perm/sec)   p_kst 2.966805e-05   p_cons 1.402925e-02   p_joint 3.921162e-05

Joint ci ratio: 2.843811e-01	ci left: 3.375045e-05	ci right 4.512421e-05	k: 189	n:4830000
Cons ci ratio: 1.495255e-02	ci left: 1.392511e-02	ci right 1.413510e-02	k: 67764	n:4830000
KS ci ratio: 3.266618e-01	ci left: 2.495311e-05	ci right 3.487609e-05	k: 143	n:4830000
FBXW7   4830000 perm   12508 sec   (386 perm/sec)   p_kst 2.960663e-05   p_cons 1.402981e-02   p_joint 3.913043e-05

Joint ci ratio: 2.836356e-01	ci left: 3.387261e-05	ci right 4.525226e-05	k: 190	n:4840000
Cons ci ratio: 1.493579e-02	ci left: 1.392763e-02	ci right 1.413742e-02	k: 67916	n:4840000
KS ci ratio: 3.255334e-01	ci left: 2.509126e-05	ci right 3.502749e-05	k: 144	n:4840000
FBXW7   4840000 perm   12555 sec   (385 perm/sec)   p_kst 2.975207e-05   p_cons 1.403223e-02   p_joint 3.925620e-05

Joint ci ratio: 2.836356e-01	ci left: 3.380277e-05	ci right 4.515896e-05	k: 190	n:4850000
Cons ci ratio: 1.492008e-02	ci left: 1.392829e-02	ci right 1.413786e-02	k: 68059	n:4850000
KS ci ratio: 3.255334e-01	ci left: 2.503952e-05	ci right 3.495527e-05	k: 144	n:4850000
FBXW7   4850000 perm   12603 sec   (385 perm/sec)   p_kst 2.969072e-05   p_cons 1.403278e-02   p_joint 3.917526e-05

Joint ci ratio: 2.828960e-01	ci left: 3.392436e-05	ci right 4.528638e-05	k: 191	n:4860000
Cons ci ratio: 1.490288e-02	ci left: 1.393181e-02	ci right 1.414120e-02	k: 68216	n:4860000
KS ci ratio: 3.255334e-01	ci left: 2.498800e-05	ci right 3.488335e-05	k: 144	n:4860000
FBXW7   4860000 perm   12650 sec   (384 perm/sec)   p_kst 2.962963e-05   p_cons 1.403621e-02   p_joint 3.930041e-05

Joint ci ratio: 2.828960e-01	ci left: 3.385470e-05	ci right 4.519339e-05	k: 191	n:4870000
Cons ci ratio: 1.488783e-02	ci left: 1.393144e-02	ci right 1.414060e-02	k: 68354	n:4870000
KS ci ratio: 3.255334e-01	ci left: 2.493669e-05	ci right 3.481172e-05	k: 144	n:4870000
FBXW7   4870000 perm   12697 sec   (384 perm/sec)   p_kst 2.956879e-05   p_cons 1.403573e-02   p_joint 3.921971e-05

Joint ci ratio: 2.881986e-01	ci left: 3.245361e-05	ci right 4.356392e-05	k: 184	n:4880000
Cons ci ratio: 1.487294e-02	ci left: 1.393086e-02	ci right 1.413980e-02	k: 68491	n:4880000
KS ci ratio: 3.244166e-01	ci left: 2.507380e-05	ci right 3.496196e-05	k: 145	n:4880000
FBXW7   4880000 perm   12745 sec   (383 perm/sec)   p_kst 2.971311e-05   p_cons 1.403504e-02   p_joint 3.770492e-05

Joint ci ratio: 2.874228e-01	ci left: 3.257698e-05	ci right 4.369405e-05	k: 185	n:4890000
Cons ci ratio: 1.485809e-02	ci left: 1.393028e-02	ci right 1.413901e-02	k: 68628	n:4890000
KS ci ratio: 3.244166e-01	ci left: 2.502252e-05	ci right 3.489046e-05	k: 145	n:4890000
FBXW7   4890000 perm   12793 sec   (382 perm/sec)   p_kst 2.965235e-05   p_cons 1.403436e-02   p_joint 3.783231e-05

Joint ci ratio: 2.874229e-01	ci left: 3.251049e-05	ci right 4.360488e-05	k: 185	n:4900000
Cons ci ratio: 1.484362e-02	ci left: 1.392910e-02	ci right 1.413760e-02	k: 68762	n:4900000
KS ci ratio: 3.244166e-01	ci left: 2.497145e-05	ci right 3.481926e-05	k: 145	n:4900000
FBXW7   4900000 perm   12842 sec   (382 perm/sec)   p_kst 2.959184e-05   p_cons 1.403306e-02   p_joint 3.775510e-05

Joint ci ratio: 2.874229e-01	ci left: 3.244428e-05	ci right 4.351607e-05	k: 185	n:4910000
Cons ci ratio: 1.482973e-02	ci left: 1.392690e-02	ci right 1.413518e-02	k: 68891	n:4910000
KS ci ratio: 3.244167e-01	ci left: 2.492059e-05	ci right 3.474834e-05	k: 145	n:4910000
FBXW7   4910000 perm   12889 sec   (381 perm/sec)   p_kst 2.953157e-05   p_cons 1.403075e-02   p_joint 3.767821e-05

Joint ci ratio: 2.874229e-01	ci left: 3.237834e-05	ci right 4.342762e-05	k: 185	n:4920000
Cons ci ratio: 1.481730e-02	ci left: 1.392209e-02	ci right 1.413011e-02	k: 69007	n:4920000
KS ci ratio: 3.244167e-01	ci left: 2.486994e-05	ci right 3.467772e-05	k: 145	n:4920000
FBXW7   4920000 perm   12939 sec   (380 perm/sec)   p_kst 2.947154e-05   p_cons 1.402581e-02   p_joint 3.760163e-05

Joint ci ratio: 2.874229e-01	ci left: 3.231266e-05	ci right 4.333954e-05	k: 185	n:4930000
Cons ci ratio: 1.480088e-02	ci left: 1.392477e-02	ci right 1.413260e-02	k: 69160	n:4930000
KS ci ratio: 3.244167e-01	ci left: 2.481950e-05	ci right 3.460738e-05	k: 145	n:4930000
FBXW7   4930000 perm   12987 sec   (380 perm/sec)   p_kst 2.941176e-05   p_cons 1.402840e-02   p_joint 3.752535e-05

Joint ci ratio: 2.866533e-01	ci left: 3.243511e-05	ci right 4.346877e-05	k: 186	n:4940000
Cons ci ratio: 1.478571e-02	ci left: 1.392522e-02	ci right 1.413284e-02	k: 69302	n:4940000
KS ci ratio: 3.244167e-01	ci left: 2.476925e-05	ci right 3.453732e-05	k: 145	n:4940000
FBXW7   4940000 perm   13037 sec   (379 perm/sec)   p_kst 2.935223e-05   p_cons 1.402874e-02   p_joint 3.765182e-05

Joint ci ratio: 2.866533e-01	ci left: 3.236958e-05	ci right 4.338095e-05	k: 186	n:4950000
Cons ci ratio: 1.477241e-02	ci left: 1.392224e-02	ci right 1.412964e-02	k: 69427	n:4950000
KS ci ratio: 3.244167e-01	ci left: 2.471922e-05	ci right 3.446755e-05	k: 145	n:4950000
FBXW7   4950000 perm   13085 sec   (378 perm/sec)   p_kst 2.929293e-05   p_cons 1.402566e-02   p_joint 3.757576e-05

Joint ci ratio: 2.866534e-01	ci left: 3.230432e-05	ci right 4.329349e-05	k: 186	n:4960000
Cons ci ratio: 1.475830e-02	ci left: 1.392089e-02	ci right 1.412806e-02	k: 69560	n:4960000
KS ci ratio: 3.244167e-01	ci left: 2.466938e-05	ci right 3.439806e-05	k: 145	n:4960000
FBXW7   4960000 perm   13134 sec   (378 perm/sec)   p_kst 2.923387e-05   p_cons 1.402419e-02   p_joint 3.750000e-05

Joint ci ratio: 2.858899e-01	ci left: 3.242609e-05	ci right 4.342199e-05	k: 187	n:4970000
Cons ci ratio: 1.474390e-02	ci left: 1.392014e-02	ci right 1.412710e-02	k: 69696	n:4970000
KS ci ratio: 3.233113e-01	ci left: 2.480459e-05	ci right 3.454635e-05	k: 146	n:4970000
FBXW7   4970000 perm   13184 sec   (377 perm/sec)   p_kst 2.937626e-05   p_cons 1.402334e-02   p_joint 3.762575e-05

Joint ci ratio: 2.858900e-01	ci left: 3.236097e-05	ci right 4.333480e-05	k: 187	n:4980000
Cons ci ratio: 1.473018e-02	ci left: 1.391820e-02	ci right 1.412494e-02	k: 69826	n:4980000
KS ci ratio: 3.233113e-01	ci left: 2.475479e-05	ci right 3.447698e-05	k: 146	n:4980000
FBXW7   4980000 perm   13234 sec   (376 perm/sec)   p_kst 2.931727e-05   p_cons 1.402129e-02   p_joint 3.755020e-05

Joint ci ratio: 2.858900e-01	ci left: 3.229612e-05	ci right 4.324796e-05	k: 187	n:4990000
Cons ci ratio: 1.471480e-02	ci left: 1.391946e-02	ci right 1.412600e-02	k: 69972	n:4990000
KS ci ratio: 3.233114e-01	ci left: 2.470518e-05	ci right 3.440789e-05	k: 146	n:4990000
FBXW7   4990000 perm   13283 sec   (376 perm/sec)   p_kst 2.925852e-05   p_cons 1.402244e-02   p_joint 3.747495e-05

Joint ci ratio: 3.593415e-01	ci left: 1.953438e-05	ci right 2.826224e-05	k: 118	n:5000000
Cons ci ratio: 1.308911e-02	ci left: 1.750685e-02	ci right 1.773771e-02	k: 88110	n:5000000
KS ci ratio: 3.222172e-01	ci left: 2.483956e-05	ci right 3.455522e-05	k: 147	n:5000000
FBXW7   5000000 perm   13334 sec   (375 perm/sec)   p_kst 2.940000e-05   p_cons 1.762200e-02   p_joint 2.360000e-05

Outputting figure to mutsig2_images.part000000000064/FBXW7.45_2584_5000000_2.94e-05_0.017622_2.36e-05.png
                gene_name: FBXW7
               theta_stop: 0.36 
                    nperm: 5000000 
                     p_ks: 2.94e-05 
        ci_ks_bounds_left: 2.48e-05 
       ci_ks_bounds_right: 3.46e-05 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.018 
                  p_joint: 2.36e-05 
     ci_joint_bounds_left: 1.95e-05 
    ci_joint_bounds_right: 2.83e-05 

Current progress: 2 percent done.
FCGBP
Processing conservation and coverage...
61% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.862839e-01	ci left: 3.843896e-02	ci right 4.643037e-02	k: 423	n:10000
Cons ci ratio: 2.426881e-02	ci left: 7.140138e-01	ci right 7.316562e-01	k: 7229	n:10000
KS ci ratio: 4.160103e-01	ci left: 6.974044e-03	ci right 1.072050e-02	k: 87	n:10000
FCGBP   10000 perm   5 sec   (1896 perm/sec)   p_kst 8.700000e-03   p_cons 7.229000e-01   p_joint 4.230000e-02

Joint ci ratio: 1.276157e-01	ci left: 4.216829e-02	ci right 4.796490e-02	k: 900	n:20000
Cons ci ratio: 1.651535e-02	ci left: 7.318466e-01	ci right 7.440842e-01	k: 14760	n:20000
KS ci ratio: 2.958716e-01	ci left: 7.413449e-03	ci right 1.003239e-02	k: 173	n:20000
FCGBP   20000 perm   11 sec   (1767 perm/sec)   p_kst 8.650000e-03   p_cons 7.380000e-01   p_joint 4.500000e-02

Joint ci ratio: 1.227677e-01	ci left: 3.084552e-02	ci right 3.491227e-02	k: 985	n:30000
Cons ci ratio: 1.390593e-02	ci left: 7.208476e-01	ci right 7.309753e-01	k: 21778	n:30000
KS ci ratio: 2.429929e-01	ci left: 7.554950e-03	ci right 9.675195e-03	k: 257	n:30000
FCGBP   30000 perm   17 sec   (1730 perm/sec)   p_kst 8.566667e-03   p_cons 7.259333e-01   p_joint 3.283333e-02

Joint ci ratio: 1.181094e-01	ci left: 2.521499e-02	ci right 2.840421e-02	k: 1071	n:40000
Cons ci ratio: 1.204393e-02	ci left: 7.214999e-01	ci right 7.302673e-01	k: 29036	n:40000
KS ci ratio: 2.142406e-01	ci left: 7.410577e-03	ci right 9.211899e-03	k: 331	n:40000
FCGBP   40000 perm   23 sec   (1714 perm/sec)   p_kst 8.275000e-03   p_cons 7.259000e-01   p_joint 2.677500e-02

Joint ci ratio: 9.982055e-02	ci left: 2.842452e-02	ci right 3.143038e-02	k: 1495	n:50000
Cons ci ratio: 1.083038e-02	ci left: 7.198178e-01	ci right 7.276762e-01	k: 36188	n:50000
KS ci ratio: 1.957063e-01	ci left: 7.180741e-03	ci right 8.757189e-03	k: 397	n:50000
FCGBP   50000 perm   30 sec   (1692 perm/sec)   p_kst 7.940000e-03   p_cons 7.237600e-01   p_joint 2.990000e-02

Joint ci ratio: 9.993999e-02	ci left: 2.374919e-02	ci right 2.626371e-02	k: 1499	n:60000
Cons ci ratio: 9.856512e-03	ci left: 7.213913e-01	ci right 7.285536e-01	k: 43499	n:60000
KS ci ratio: 1.812749e-01	ci left: 7.032054e-03	ci right 8.449517e-03	k: 463	n:60000
FCGBP   60000 perm   36 sec   (1676 perm/sec)   p_kst 7.716667e-03   p_cons 7.249833e-01   p_joint 2.498333e-02

Joint ci ratio: 9.759314e-02	ci left: 2.142800e-02	ci right 2.364039e-02	k: 1576	n:70000
Cons ci ratio: 9.128579e-03	ci left: 7.215181e-01	ci right 7.281490e-01	k: 50739	n:70000
KS ci ratio: 1.658833e-01	ci left: 7.257491e-03	ci right 8.583786e-03	k: 553	n:70000
FCGBP   70000 perm   42 sec   (1655 perm/sec)   p_kst 7.900000e-03   p_cons 7.248429e-01   p_joint 2.251429e-02

Joint ci ratio: 9.729406e-02	ci left: 1.891903e-02	ci right 2.086600e-02	k: 1590	n:80000
Cons ci ratio: 8.532970e-03	ci left: 7.220169e-01	ci right 7.282167e-01	k: 58010	n:80000
KS ci ratio: 1.565645e-01	ci left: 7.166003e-03	ci right 8.395097e-03	k: 621	n:80000
FCGBP   80000 perm   49 sec   (1643 perm/sec)   p_kst 7.762500e-03   p_cons 7.251250e-01   p_joint 1.987500e-02

Joint ci ratio: 9.397425e-02	ci left: 1.807461e-02	ci right 1.986770e-02	k: 1706	n:90000
Cons ci ratio: 7.814796e-03	ci left: 7.336534e-01	ci right 7.394203e-01	k: 66289	n:90000
KS ci ratio: 1.458100e-01	ci left: 7.385503e-03	ci right 8.557655e-03	k: 716	n:90000
FCGBP   90000 perm   55 sec   (1633 perm/sec)   p_kst 7.955556e-03   p_cons 7.365444e-01   p_joint 1.895556e-02

Joint ci ratio: 8.472051e-02	ci left: 2.007126e-02	ci right 2.185667e-02	k: 2095	n:100000
Cons ci ratio: 7.398000e-03	ci left: 7.346307e-01	ci right 7.400956e-01	k: 73737	n:100000
KS ci ratio: 1.390922e-01	ci left: 7.331641e-03	ci right 8.437190e-03	k: 787	n:100000
FCGBP   100000 perm   62 sec   (1618 perm/sec)   p_kst 7.870000e-03   p_cons 7.373700e-01   p_joint 2.095000e-02

Joint ci ratio: 8.310127e-02	ci left: 1.900268e-02	ci right 2.065914e-02	k: 2180	n:110000
Cons ci ratio: 7.055489e-03	ci left: 7.346611e-01	ci right 7.398719e-01	k: 81100	n:110000
KS ci ratio: 1.322966e-01	ci left: 7.394083e-03	ci right 8.450291e-03	k: 870	n:110000
FCGBP   110000 perm   69 sec   (1604 perm/sec)   p_kst 7.909091e-03   p_cons 7.372727e-01   p_joint 1.981818e-02

Joint ci ratio: 8.249962e-02	ci left: 1.770425e-02	ci right 1.923581e-02	k: 2215	n:120000
Cons ci ratio: 6.759002e-03	ci left: 7.345493e-01	ci right 7.395392e-01	k: 88446	n:120000
KS ci ratio: 1.258118e-01	ci left: 7.519865e-03	ci right 8.537459e-03	k: 962	n:120000
FCGBP   120000 perm   75 sec   (1591 perm/sec)   p_kst 8.016667e-03   p_cons 7.370500e-01   p_joint 1.845833e-02

Joint ci ratio: 7.557244e-02	ci left: 1.951006e-02	ci right 2.104990e-02	k: 2635	n:130000
Cons ci ratio: 6.491069e-03	ci left: 7.348136e-01	ci right 7.396065e-01	k: 95838	n:130000
KS ci ratio: 1.207741e-01	ci left: 7.552741e-03	ci right 8.530933e-03	k: 1044	n:130000
FCGBP   130000 perm   82 sec   (1578 perm/sec)   p_kst 8.030769e-03   p_cons 7.372154e-01   p_joint 2.026923e-02

Joint ci ratio: 7.627972e-02	ci left: 1.780757e-02	ci right 1.922676e-02	k: 2591	n:140000
Cons ci ratio: 6.256353e-03	ci left: 7.348143e-01	ci right 7.394330e-01	k: 103198	n:140000
KS ci ratio: 1.164009e-01	ci left: 7.567743e-03	ci right 8.509947e-03	k: 1124	n:140000
FCGBP   140000 perm   90 sec   (1561 perm/sec)   p_kst 8.028571e-03   p_cons 7.371286e-01   p_joint 1.850714e-02

Joint ci ratio: 7.138558e-02	ci left: 1.900270e-02	ci right 2.041595e-02	k: 2955	n:150000
Cons ci ratio: 6.044034e-03	ci left: 7.349045e-01	ci right 7.393663e-01	k: 110571	n:150000
KS ci ratio: 1.129442e-01	ci left: 7.516497e-03	ci right 8.422677e-03	k: 1194	n:150000
FCGBP   150000 perm   97 sec   (1549 perm/sec)   p_kst 7.960000e-03   p_cons 7.371400e-01   p_joint 1.970000e-02

Joint ci ratio: 6.486172e-02	ci left: 2.159433e-02	ci right 2.304805e-02	k: 3570	n:160000
Cons ci ratio: 5.853848e-03	ci left: 7.348604e-01	ci right 7.391810e-01	k: 117924	n:160000
KS ci ratio: 1.069590e-01	ci left: 7.879508e-03	ci right 8.775945e-03	k: 1331	n:160000
FCGBP   160000 perm   104 sec   (1537 perm/sec)   p_kst 8.318750e-03   p_cons 7.370250e-01   p_joint 2.231250e-02

Joint ci ratio: 6.309703e-02	ci left: 2.149906e-02	ci right 2.290554e-02	k: 3773	n:170000
Cons ci ratio: 5.672109e-03	ci left: 7.354015e-01	ci right 7.395904e-01	k: 125375	n:170000
KS ci ratio: 1.037008e-01	ci left: 7.902841e-03	ci right 8.772875e-03	k: 1416	n:170000
FCGBP   170000 perm   111 sec   (1525 perm/sec)   p_kst 8.329412e-03   p_cons 7.375000e-01   p_joint 2.219412e-02

Joint ci ratio: 6.243082e-02	ci left: 2.076376e-02	ci right 2.210727e-02	k: 3857	n:180000
Cons ci ratio: 5.510322e-03	ci left: 7.356000e-01	ci right 7.396701e-01	k: 132775	n:180000
KS ci ratio: 1.010632e-01	ci left: 7.869785e-03	ci right 8.712834e-03	k: 1491	n:180000
FCGBP   180000 perm   119 sec   (1517 perm/sec)   p_kst 8.283333e-03   p_cons 7.376389e-01   p_joint 2.142778e-02

Joint ci ratio: 6.199281e-02	ci left: 1.997119e-02	ci right 2.125402e-02	k: 3915	n:190000
Cons ci ratio: 5.362507e-03	ci left: 7.357158e-01	ci right 7.396769e-01	k: 140163	n:190000
KS ci ratio: 9.883992e-02	ci left: 7.804520e-03	ci right 8.621118e-03	k: 1559	n:190000
FCGBP   190000 perm   126 sec   (1506 perm/sec)   p_kst 8.205263e-03   p_cons 7.377000e-01   p_joint 2.060526e-02

Outputting figure to mutsig2_images.part000000000064/FCGBP.15_16362_190000_0.0082053_0.7377_0.020605.png
                gene_name: FCGBP
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.0082 
        ci_ks_bounds_left: 0.0078 
       ci_ks_bounds_right: 0.0086 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 4 percent done.
FER1L6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.530929e-02	ci left: 8.609022e-01	ci right 8.742829e-01	k: 8677	n:10000
Cons ci ratio: 5.427694e-02	ci left: 3.333947e-01	ci right 3.520970e-01	k: 3427	n:10000
KS ci ratio: 2.879412e-02	ci left: 6.400560e-01	ci right 6.588569e-01	k: 6495	n:10000
FER1L6   10000 perm   3 sec   (3754 perm/sec)   p_kst 6.495000e-01   p_cons 3.427000e-01   p_joint 8.677000e-01

Outputting figure to mutsig2_images.part000000000064/FER1L6.14_5734_10000_0.6495_0.3427_0.8677.png
                gene_name: FER1L6
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 5 percent done.
FGA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.026571e-02	ci left: 2.882526e-01	ci right 3.062657e-01	k: 2972	n:10000
Cons ci ratio: 1.660239e-01	ci left: 4.840157e-02	ci right 5.726121e-02	k: 527	n:10000
KS ci ratio: 1.637241e-02	ci left: 8.443782e-01	ci right 8.584164e-01	k: 8515	n:10000
FGA   10000 perm   2 sec   (4419 perm/sec)   p_kst 8.515000e-01   p_cons 5.270000e-02   p_joint 2.972000e-01

Joint ci ratio: 4.692704e-02	ci left: 2.525420e-01	ci right 2.647282e-01	k: 5172	n:20000
Cons ci ratio: 1.170486e-01	ci left: 4.998388e-02	ci right 5.624684e-02	k: 1061	n:20000
KS ci ratio: 1.271807e-02	ci left: 8.207748e-01	ci right 8.313302e-01	k: 16522	n:20000
FGA   20000 perm   5 sec   (3955 perm/sec)   p_kst 8.261000e-01   p_cons 5.305000e-02   p_joint 2.586000e-01

Joint ci ratio: 3.728623e-02	ci left: 2.641868e-01	ci right 2.742579e-01	k: 8076	n:30000
Cons ci ratio: 9.572925e-02	ci left: 5.039385e-02	ci right 5.549316e-02	k: 1587	n:30000
KS ci ratio: 1.044791e-02	ci left: 8.199792e-01	ci right 8.286245e-01	k: 24730	n:30000
FGA   30000 perm   8 sec   (3809 perm/sec)   p_kst 8.243333e-01   p_cons 5.290000e-02   p_joint 2.692000e-01

Outputting figure to mutsig2_images.part000000000064/FGA.13_2669_30000_0.82433_0.0529_0.2692.png
                gene_name: FGA
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 7 percent done.
FCRL5
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.713038e-02	ci left: 6.668278e-01	ci right 6.852695e-01	k: 6761	n:10000
Cons ci ratio: 4.212482e-02	ci left: 4.541873e-01	ci right 4.738337e-01	k: 4640	n:10000
KS ci ratio: 2.190155e-02	ci left: 7.536289e-01	ci right 7.704182e-01	k: 7621	n:10000
FCRL5   10000 perm   2 sec   (4295 perm/sec)   p_kst 7.621000e-01   p_cons 4.640000e-01   p_joint 6.761000e-01

Outputting figure to mutsig2_images.part000000000064/FCRL5.10_3002_10000_0.7621_0.464_0.6761.png
                gene_name: FCRL5
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 9 percent done.
FGD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.834631e-02	ci left: 3.018342e-01	ci right 3.200760e-01	k: 3109	n:10000
Cons ci ratio: 4.679252e-02	ci left: 4.026288e-01	ci right 4.220223e-01	k: 4123	n:10000
KS ci ratio: 6.432495e-02	ci left: 2.620092e-01	ci right 2.795245e-01	k: 2707	n:10000
FGD6   10000 perm   3 sec   (3787 perm/sec)   p_kst 2.707000e-01   p_cons 4.123000e-01   p_joint 3.109000e-01

Outputting figure to mutsig2_images.part000000000064/FGD6.11_4377_10000_0.2707_0.4123_0.3109.png
                gene_name: FGD6
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 11 percent done.
FCRL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.770386e-02	ci left: 1.591483e-01	ci right 1.738466e-01	k: 1664	n:10000
Cons ci ratio: 3.984213e-02	ci left: 4.819551e-01	ci right 5.016497e-01	k: 4918	n:10000
KS ci ratio: 1.420057e-01	ci left: 6.575174e-02	ci right 7.590000e-02	k: 707	n:10000
FCRL3   10000 perm   2 sec   (4940 perm/sec)   p_kst 7.070000e-02   p_cons 4.918000e-01   p_joint 1.664000e-01

Joint ci ratio: 5.445961e-02	ci left: 2.001161e-01	ci right 2.113696e-01	k: 4114	n:20000
Cons ci ratio: 2.897557e-02	ci left: 4.708560e-01	ci right 4.847505e-01	k: 9556	n:20000
KS ci ratio: 1.007218e-01	ci left: 6.684339e-02	ci right 7.398211e-02	k: 1407	n:20000
FCRL3   20000 perm   5 sec   (4435 perm/sec)   p_kst 7.035000e-02   p_cons 4.778000e-01   p_joint 2.057000e-01

Joint ci ratio: 4.499222e-02	ci left: 1.973700e-01	ci right 2.064878e-01	k: 6057	n:30000
Cons ci ratio: 2.422101e-02	ci left: 4.604419e-01	ci right 4.717646e-01	k: 13983	n:30000
KS ci ratio: 8.163826e-02	ci left: 6.844579e-02	ci right 7.430421e-02	k: 2140	n:30000
FCRL3   30000 perm   7 sec   (4235 perm/sec)   p_kst 7.133333e-02   p_cons 4.661000e-01   p_joint 2.019000e-01

Outputting figure to mutsig2_images.part000000000064/FCRL3.9_2261_30000_0.071333_0.4661_0.2019.png
                gene_name: FCRL3
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 12 percent done.
FBXW11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.058591e-02	ci left: 3.655984e-01	ci right 3.846744e-01	k: 3751	n:10000
Cons ci ratio: 4.306825e-02	ci left: 4.432085e-01	ci right 4.628189e-01	k: 4530	n:10000
KS ci ratio: 5.257462e-02	ci left: 3.478011e-01	ci right 3.666822e-01	k: 3572	n:10000
FBXW11   10000 perm   2 sec   (5171 perm/sec)   p_kst 3.572000e-01   p_cons 4.530000e-01   p_joint 3.751000e-01

Outputting figure to mutsig2_images.part000000000064/FBXW11.8_1744_10000_0.3572_0.453_0.3751.png
                gene_name: FBXW11
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 14 percent done.
FCHSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.384527e-02	ci left: 7.210814e-01	ci right 7.385845e-01	k: 7299	n:10000
Cons ci ratio: 8.872880e-02	ci left: 1.560058e-01	ci right 1.705909e-01	k: 1632	n:10000
KS ci ratio: 1.898024e-02	ci left: 8.022727e-01	ci right 8.177463e-01	k: 8101	n:10000
FCHSD1   10000 perm   2 sec   (5656 perm/sec)   p_kst 8.101000e-01   p_cons 1.632000e-01   p_joint 7.299000e-01

Outputting figure to mutsig2_images.part000000000064/FCHSD1.8_2153_10000_0.8101_0.1632_0.7299.png
                gene_name: FCHSD1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 16 percent done.
FCHSD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.572663e-02	ci left: 1.366833e-01	ci right 1.505251e-01	k: 1435	n:10000
Cons ci ratio: 1.231453e-01	ci left: 8.630741e-02	ci right 9.773155e-02	k: 919	n:10000
KS ci ratio: 5.206347e-02	ci left: 3.522739e-01	ci right 3.712067e-01	k: 3617	n:10000
FCHSD2   10000 perm   2 sec   (4998 perm/sec)   p_kst 3.617000e-01   p_cons 9.190000e-02   p_joint 1.435000e-01

Joint ci ratio: 6.259287e-02	ci left: 1.587937e-01	ci right 1.691042e-01	k: 3278	n:20000
Cons ci ratio: 8.900991e-02	ci left: 8.445180e-02	ci right 9.236834e-02	k: 1767	n:20000
KS ci ratio: 3.683026e-02	ci left: 3.548870e-01	ci right 3.682533e-01	k: 7231	n:20000
FCHSD2   20000 perm   5 sec   (4434 perm/sec)   p_kst 3.615500e-01   p_cons 8.835000e-02   p_joint 1.639000e-01

Outputting figure to mutsig2_images.part000000000064/FCHSD2.8_2303_20000_0.36155_0.08835_0.1639.png
                gene_name: FCHSD2
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 18 percent done.
FGD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.363436e-01	ci left: 1.114735e-02	ci right 1.574255e-02	k: 133	n:10000
Cons ci ratio: 2.191527e-01	ci left: 2.759554e-02	ci right 3.448123e-02	k: 309	n:10000
KS ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
FGD1   10000 perm   2 sec   (5175 perm/sec)   p_kst 2.130000e-02   p_cons 3.090000e-02   p_joint 1.330000e-02

Joint ci ratio: 2.180628e-01	ci left: 1.416473e-02	ci right 1.767805e-02	k: 317	n:20000
Cons ci ratio: 1.553563e-01	ci left: 2.844890e-02	ci right 3.328876e-02	k: 616	n:20000
KS ci ratio: 1.852381e-01	ci left: 1.986864e-02	ci right 2.397200e-02	k: 437	n:20000
FGD1   20000 perm   4 sec   (4586 perm/sec)   p_kst 2.185000e-02   p_cons 3.080000e-02   p_joint 1.585000e-02

Joint ci ratio: 2.189992e-01	ci left: 9.409021e-03	ci right 1.175388e-02	k: 316	n:30000
Cons ci ratio: 1.418210e-01	ci left: 2.306968e-02	ci right 2.662315e-02	k: 744	n:30000
KS ci ratio: 1.519584e-01	ci left: 2.004894e-02	ci right 2.337792e-02	k: 650	n:30000
FGD1   30000 perm   7 sec   (4376 perm/sec)   p_kst 2.166667e-02   p_cons 2.480000e-02   p_joint 1.053333e-02

Joint ci ratio: 2.235984e-01	ci left: 6.772323e-03	ci right 8.500309e-03	k: 304	n:40000
Cons ci ratio: 1.228422e-01	ci left: 2.329805e-02	ci right 2.637146e-02	k: 992	n:40000
KS ci ratio: 1.371984e-01	ci left: 1.862630e-02	ci right 2.139400e-02	k: 799	n:40000
FGD1   40000 perm   9 sec   (4248 perm/sec)   p_kst 1.997500e-02   p_cons 2.480000e-02   p_joint 7.600000e-03

Joint ci ratio: 1.977193e-01	ci left: 7.028568e-03	ci right 8.589391e-03	k: 389	n:50000
Cons ci ratio: 1.022781e-01	ci left: 2.707842e-02	ci right 3.001665e-02	k: 1426	n:50000
KS ci ratio: 1.220311e-01	ci left: 1.898479e-02	ci right 2.147135e-02	k: 1010	n:50000
FGD1   50000 perm   12 sec   (4075 perm/sec)   p_kst 2.020000e-02   p_cons 2.852000e-02   p_joint 7.780000e-03

Joint ci ratio: 1.448028e-01	ci left: 1.119229e-02	ci right 1.295538e-02	k: 723	n:60000
Cons ci ratio: 9.287664e-02	ci left: 2.749258e-02	ci right 3.018659e-02	k: 1729	n:60000
KS ci ratio: 1.124054e-01	ci left: 1.874885e-02	ci right 2.099793e-02	k: 1191	n:60000
FGD1   60000 perm   15 sec   (3985 perm/sec)   p_kst 1.985000e-02   p_cons 2.881667e-02   p_joint 1.205000e-02

Joint ci ratio: 1.503757e-01	ci left: 8.890904e-03	ci right 1.035018e-02	k: 672	n:70000
Cons ci ratio: 8.641425e-02	ci left: 2.732173e-02	ci right 2.980327e-02	k: 1998	n:70000
KS ci ratio: 1.041309e-01	ci left: 1.880862e-02	ci right 2.088860e-02	k: 1388	n:70000
FGD1   70000 perm   18 sec   (3892 perm/sec)   p_kst 1.982857e-02   p_cons 2.854286e-02   p_joint 9.600000e-03

Joint ci ratio: 1.457367e-01	ci left: 8.308983e-03	ci right 9.626997e-03	k: 716	n:80000
Cons ci ratio: 8.077083e-02	ci left: 2.744361e-02	ci right 2.976575e-02	k: 2287	n:80000
KS ci ratio: 9.704542e-02	ci left: 1.901665e-02	ci right 2.096838e-02	k: 1598	n:80000
FGD1   80000 perm   21 sec   (3822 perm/sec)   p_kst 1.997500e-02   p_cons 2.858750e-02   p_joint 8.950000e-03

Joint ci ratio: 1.275983e-01	ci left: 9.715195e-03	ci right 1.104998e-02	k: 933	n:90000
Cons ci ratio: 7.651954e-02	ci left: 2.724808e-02	ci right 2.942690e-02	k: 2549	n:90000
KS ci ratio: 9.236026e-02	ci left: 1.871517e-02	ci right 2.053820e-02	k: 1765	n:90000
FGD1   90000 perm   24 sec   (3764 perm/sec)   p_kst 1.961111e-02   p_cons 2.832222e-02   p_joint 1.036667e-02

Joint ci ratio: 1.312592e-01	ci left: 8.259449e-03	ci right 9.429307e-03	k: 883	n:100000
Cons ci ratio: 7.268972e-02	ci left: 2.723179e-02	ci right 2.929570e-02	k: 2825	n:100000
KS ci ratio: 8.778561e-02	ci left: 1.869108e-02	ci right 2.041695e-02	k: 1954	n:100000
FGD1   100000 perm   27 sec   (3699 perm/sec)   p_kst 1.954000e-02   p_cons 2.825000e-02   p_joint 8.830000e-03

Joint ci ratio: 1.042859e-01	ci left: 1.202003e-02	ci right 1.335130e-02	k: 1394	n:110000
Cons ci ratio: 6.929090e-02	ci left: 2.729219e-02	ci right 2.926006e-02	k: 3109	n:110000
KS ci ratio: 8.339432e-02	ci left: 1.886910e-02	ci right 2.052000e-02	k: 2165	n:110000
FGD1   110000 perm   30 sec   (3639 perm/sec)   p_kst 1.968182e-02   p_cons 2.826364e-02   p_joint 1.267273e-02

Joint ci ratio: 1.035560e-01	ci left: 1.118856e-02	ci right 1.241853e-02	k: 1415	n:120000
Cons ci ratio: 6.654036e-02	ci left: 2.717223e-02	ci right 2.905067e-02	k: 3372	n:120000
KS ci ratio: 8.017186e-02	ci left: 1.874962e-02	ci right 2.032372e-02	k: 2343	n:120000
FGD1   120000 perm   34 sec   (3579 perm/sec)   p_kst 1.952500e-02   p_cons 2.810000e-02   p_joint 1.179167e-02

Joint ci ratio: 8.699876e-02	ci left: 1.470750e-02	ci right 1.605271e-02	k: 1998	n:130000
Cons ci ratio: 6.377818e-02	ci left: 2.733709e-02	ci right 2.914557e-02	k: 3670	n:130000
KS ci ratio: 7.703181e-02	ci left: 1.877787e-02	ci right 2.028982e-02	k: 2538	n:130000
FGD1   130000 perm   37 sec   (3517 perm/sec)   p_kst 1.952308e-02   p_cons 2.823077e-02   p_joint 1.536923e-02

Outputting figure to mutsig2_images.part000000000064/FGD1.8_2958_130000_0.019523_0.028231_0.015369.png
                gene_name: FGD1
               theta_stop: 0.087 
                    nperm: 130000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 20 percent done.
FCHO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.813102e-02	ci left: 3.890841e-01	ci right 4.083750e-01	k: 3987	n:10000
Cons ci ratio: 1.019918e-01	ci left: 1.220977e-01	ci right 1.353194e-01	k: 1286	n:10000
KS ci ratio: 2.026603e-02	ci left: 7.809707e-01	ci right 7.970605e-01	k: 7891	n:10000
FCHO2   10000 perm   2 sec   (4670 perm/sec)   p_kst 7.891000e-01   p_cons 1.286000e-01   p_joint 3.987000e-01

Joint ci ratio: 2.433738e-02	ci left: 5.577447e-01	ci right 5.715365e-01	k: 11293	n:20000
Cons ci ratio: 6.967104e-02	ci left: 1.318685e-01	ci right 1.414374e-01	k: 2732	n:20000
KS ci ratio: 1.433008e-02	ci left: 7.833794e-01	ci right 7.947364e-01	k: 15782	n:20000
FCHO2   20000 perm   5 sec   (4222 perm/sec)   p_kst 7.891000e-01   p_cons 1.366000e-01   p_joint 5.646500e-01

Outputting figure to mutsig2_images.part000000000064/FCHO2.7_2537_20000_0.7891_0.1366_0.56465.png
                gene_name: FCHO2
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 21 percent done.
FCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.305957e-02	ci left: 4.433082e-01	ci right 4.629191e-01	k: 4531	n:10000
Cons ci ratio: 9.759959e-03	ci left: 9.369275e-01	ci right 9.462132e-01	k: 9417	n:10000
KS ci ratio: 6.163475e-02	ci left: 2.790384e-01	ci right 2.968853e-01	k: 2879	n:10000
FCN1   10000 perm   2 sec   (5404 perm/sec)   p_kst 2.879000e-01   p_cons 9.417000e-01   p_joint 4.531000e-01

Outputting figure to mutsig2_images.part000000000064/FCN1.6_1017_10000_0.2879_0.9417_0.4531.png
                gene_name: FCN1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 23 percent done.
FER
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.910833e-02	ci left: 3.795277e-01	ci right 3.987369e-01	k: 3891	n:10000
Cons ci ratio: 5.342080e-02	ci left: 3.405470e-01	ci right 3.593405e-01	k: 3499	n:10000
KS ci ratio: 5.934121e-02	ci left: 2.946952e-01	ci right 3.128192e-01	k: 3037	n:10000
FER   10000 perm   2 sec   (5149 perm/sec)   p_kst 3.037000e-01   p_cons 3.499000e-01   p_joint 3.891000e-01

Outputting figure to mutsig2_images.part000000000064/FER.6_2541_10000_0.3037_0.3499_0.3891.png
                gene_name: FER
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 25 percent done.
FER1L5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
Cons ci ratio: 4.245605e-03	ci left: 9.862119e-01	ci right 9.904965e-01	k: 9885	n:10000
KS ci ratio: 5.830139e-01	ci left: 3.198812e-03	ci right 5.902342e-03	k: 44	n:10000
FER1L5   10000 perm   3 sec   (3500 perm/sec)   p_kst 4.400000e-03   p_cons 9.885000e-01   p_joint 2.810000e-02

Joint ci ratio: 1.920746e-01	ci left: 1.843815e-02	ci right 2.240301e-02	k: 407	n:20000
Cons ci ratio: 3.099192e-03	ci left: 9.860745e-01	ci right 9.891813e-01	k: 19754	n:20000
KS ci ratio: 3.660847e-01	ci left: 4.658600e-03	ci right 6.788973e-03	k: 113	n:20000
FER1L5   20000 perm   6 sec   (3271 perm/sec)   p_kst 5.650000e-03   p_cons 9.877000e-01   p_joint 2.035000e-02

Joint ci ratio: 1.546509e-01	ci left: 1.934319e-02	ci right 2.261716e-02	k: 628	n:30000
Cons ci ratio: 2.504524e-03	ci left: 9.866328e-01	ci right 9.891381e-01	k: 29638	n:30000
KS ci ratio: 3.100462e-01	ci left: 4.479162e-03	ci right 6.152174e-03	k: 158	n:30000
FER1L5   30000 perm   9 sec   (3162 perm/sec)   p_kst 5.266667e-03   p_cons 9.879333e-01   p_joint 2.093333e-02

Joint ci ratio: 1.214080e-01	ci left: 2.385590e-02	ci right 2.696352e-02	k: 1015	n:40000
Cons ci ratio: 2.141644e-03	ci left: 9.871192e-01	ci right 9.892591e-01	k: 39529	n:40000
KS ci ratio: 2.710921e-01	ci left: 4.495471e-03	ci right 5.927807e-03	k: 207	n:40000
FER1L5   40000 perm   13 sec   (3094 perm/sec)   p_kst 5.175000e-03   p_cons 9.882250e-01   p_joint 2.537500e-02

Joint ci ratio: 1.191751e-01	ci left: 1.991639e-02	ci right 2.245963e-02	k: 1058	n:50000
Cons ci ratio: 2.136743e-03	ci left: 9.842893e-01	ci right 9.864138e-01	k: 49269	n:50000
KS ci ratio: 2.429429e-01	ci left: 4.550863e-03	ci right 5.827623e-03	k: 258	n:50000
FER1L5   50000 perm   16 sec   (3030 perm/sec)   p_kst 5.160000e-03   p_cons 9.853800e-01   p_joint 2.116000e-02

Joint ci ratio: 1.185382e-01	ci left: 1.683795e-02	ci right 1.897571e-02	k: 1073	n:60000
Cons ci ratio: 1.946752e-03	ci left: 9.844425e-01	ci right 9.863768e-01	k: 59126	n:60000
KS ci ratio: 2.224242e-01	ci left: 4.577230e-03	ci right 5.738094e-03	k: 308	n:60000
FER1L5   60000 perm   20 sec   (2978 perm/sec)   p_kst 5.133333e-03   p_cons 9.854333e-01   p_joint 1.788333e-02

Joint ci ratio: 1.018359e-01	ci left: 1.967196e-02	ci right 2.179660e-02	k: 1450	n:70000
Cons ci ratio: 1.822996e-03	ci left: 9.841750e-01	ci right 9.859845e-01	k: 68957	n:70000
KS ci ratio: 2.049275e-01	ci left: 4.667090e-03	ci right 5.745979e-03	k: 363	n:70000
FER1L5   70000 perm   24 sec   (2928 perm/sec)   p_kst 5.185714e-03   p_cons 9.851000e-01   p_joint 2.071429e-02

Joint ci ratio: 9.928630e-02	ci left: 1.816273e-02	ci right 2.007237e-02	k: 1528	n:80000
Cons ci ratio: 1.703709e-03	ci left: 9.842621e-01	ci right 9.859525e-01	k: 78810	n:80000
KS ci ratio: 1.926254e-01	ci left: 4.653861e-03	ci right 5.657541e-03	k: 411	n:80000
FER1L5   80000 perm   28 sec   (2884 perm/sec)   p_kst 5.137500e-03   p_cons 9.851250e-01   p_joint 1.910000e-02

Joint ci ratio: 9.899931e-02	ci left: 1.627388e-02	ci right 1.797967e-02	k: 1540	n:90000
Cons ci ratio: 1.619688e-03	ci left: 9.840591e-01	ci right 9.856650e-01	k: 88639	n:90000
KS ci ratio: 1.805355e-01	ci left: 4.740560e-03	ci right 5.691760e-03	k: 468	n:90000
FER1L5   90000 perm   32 sec   (2845 perm/sec)   p_kst 5.200000e-03   p_cons 9.848778e-01   p_joint 1.711111e-02

Joint ci ratio: 9.367504e-02	ci left: 1.640319e-02	ci right 1.802498e-02	k: 1720	n:100000
Cons ci ratio: 1.486138e-03	ci left: 9.850885e-01	ci right 9.865632e-01	k: 98584	n:100000
KS ci ratio: 1.711245e-01	ci left: 4.773198e-03	ci right 5.675867e-03	k: 521	n:100000
FER1L5   100000 perm   36 sec   (2806 perm/sec)   p_kst 5.210000e-03   p_cons 9.858400e-01   p_joint 1.720000e-02

Joint ci ratio: 9.260822e-02	ci left: 1.528451e-02	ci right 1.677753e-02	k: 1762	n:110000
Cons ci ratio: 1.423100e-03	ci left: 9.849995e-01	ci right 9.864111e-01	k: 108429	n:110000
KS ci ratio: 1.631895e-01	ci left: 4.792233e-03	ci right 5.652353e-03	k: 573	n:110000
FER1L5   110000 perm   40 sec   (2769 perm/sec)   p_kst 5.209091e-03   p_cons 9.857182e-01   p_joint 1.601818e-02

Joint ci ratio: 9.577874e-02	ci left: 1.310687e-02	ci right 1.443345e-02	k: 1651	n:120000
Cons ci ratio: 1.326642e-03	ci left: 9.857798e-01	ci right 9.870965e-01	k: 118374	n:120000
KS ci ratio: 1.642345e-01	ci left: 4.336852e-03	ci right 5.120712e-03	k: 566	n:120000
FER1L5   120000 perm   44 sec   (2734 perm/sec)   p_kst 4.716667e-03   p_cons 9.864500e-01   p_joint 1.375833e-02

Joint ci ratio: 9.261779e-02	ci left: 1.296238e-02	ci right 1.422869e-02	k: 1766	n:130000
Cons ci ratio: 1.236834e-03	ci left: 9.866056e-01	ci right 9.878341e-01	k: 128340	n:130000
KS ci ratio: 1.579530e-01	ci left: 4.342833e-03	ci right 5.094906e-03	k: 612	n:130000
FER1L5   130000 perm   48 sec   (2698 perm/sec)   p_kst 4.707692e-03   p_cons 9.872308e-01   p_joint 1.358462e-02

Joint ci ratio: 9.110933e-02	ci left: 1.245507e-02	ci right 1.365094e-02	k: 1826	n:140000
Cons ci ratio: 1.191248e-03	ci left: 9.866412e-01	ci right 9.878242e-01	k: 138214	n:140000
KS ci ratio: 1.516491e-01	ci left: 4.389683e-03	ci right 5.116776e-03	k: 664	n:140000
FER1L5   140000 perm   53 sec   (2665 perm/sec)   p_kst 4.742857e-03   p_cons 9.872429e-01   p_joint 1.304286e-02

Joint ci ratio: 8.385346e-02	ci left: 1.375748e-02	ci right 1.496807e-02	k: 2153	n:150000
Cons ci ratio: 1.150660e-03	ci left: 9.866660e-01	ci right 9.878084e-01	k: 148087	n:150000
KS ci ratio: 1.464553e-01	ci left: 4.405108e-03	ci right 5.107579e-03	k: 712	n:150000
FER1L5   150000 perm   57 sec   (2630 perm/sec)   p_kst 4.746667e-03   p_cons 9.872467e-01   p_joint 1.435333e-02

Joint ci ratio: 8.294054e-02	ci left: 1.319734e-02	ci right 1.434538e-02	k: 2202	n:160000
Cons ci ratio: 1.110081e-03	ci left: 9.867776e-01	ci right 9.878797e-01	k: 157974	n:160000
KS ci ratio: 1.407427e-01	ci left: 4.485306e-03	ci right 5.170327e-03	k: 771	n:160000
FER1L5   160000 perm   62 sec   (2598 perm/sec)   p_kst 4.818750e-03   p_cons 9.873375e-01   p_joint 1.376250e-02

Joint ci ratio: 8.388589e-02	ci left: 1.215005e-02	ci right 1.321961e-02	k: 2155	n:170000
Cons ci ratio: 1.077523e-03	ci left: 9.867804e-01	ci right 9.878500e-01	k: 167845	n:170000
KS ci ratio: 1.369817e-01	ci left: 4.465615e-03	ci right 5.127917e-03	k: 814	n:170000
FER1L5   170000 perm   66 sec   (2564 perm/sec)   p_kst 4.788235e-03   p_cons 9.873235e-01   p_joint 1.267647e-02

Joint ci ratio: 7.678588e-02	ci left: 1.372388e-02	ci right 1.482518e-02	k: 2568	n:180000
Cons ci ratio: 1.048135e-03	ci left: 9.867720e-01	ci right 9.878122e-01	k: 177714	n:180000
KS ci ratio: 1.325020e-01	ci left: 4.518159e-03	ci right 5.164614e-03	k: 870	n:180000
FER1L5   180000 perm   71 sec   (2536 perm/sec)   p_kst 4.833333e-03   p_cons 9.873000e-01   p_joint 1.426667e-02

Joint ci ratio: 8.658063e-02	ci left: 1.021132e-02	ci right 1.114054e-02	k: 2027	n:190000
Cons ci ratio: 1.091237e-03	ci left: 9.849470e-01	ci right 9.860276e-01	k: 187244	n:190000
KS ci ratio: 1.291367e-01	ci left: 4.514543e-03	ci right 5.142817e-03	k: 916	n:190000
FER1L5   190000 perm   76 sec   (2506 perm/sec)   p_kst 4.821053e-03   p_cons 9.854947e-01   p_joint 1.066842e-02

Joint ci ratio: 8.544112e-02	ci left: 9.969785e-03	ci right 1.086449e-02	k: 2082	n:200000
Cons ci ratio: 1.064703e-03	ci left: 9.849309e-01	ci right 9.859850e-01	k: 197093	n:200000
KS ci ratio: 1.257533e-01	ci left: 4.530848e-03	ci right 5.143639e-03	k: 966	n:200000
FER1L5   200000 perm   81 sec   (2476 perm/sec)   p_kst 4.830000e-03   p_cons 9.854650e-01   p_joint 1.041000e-02

Joint ci ratio: 8.373380e-02	ci left: 9.895878e-03	ci right 1.076534e-02	k: 2168	n:210000
Cons ci ratio: 1.041045e-03	ci left: 9.848875e-01	ci right 9.859180e-01	k: 206936	n:210000
KS ci ratio: 1.231101e-01	ci left: 4.508865e-03	ci right 5.104930e-03	k: 1008	n:210000
FER1L5   210000 perm   86 sec   (2448 perm/sec)   p_kst 4.800000e-03   p_cons 9.854095e-01   p_joint 1.032381e-02

Joint ci ratio: 7.036924e-02	ci left: 1.341939e-02	ci right 1.440257e-02	k: 3059	n:220000
Cons ci ratio: 9.849757e-04	ci left: 9.858102e-01	ci right 9.867861e-01	k: 216987	n:220000
KS ci ratio: 1.201681e-01	ci left: 4.524276e-03	ci right 5.107070e-03	k: 1058	n:220000
FER1L5   220000 perm   91 sec   (2413 perm/sec)   p_kst 4.809091e-03   p_cons 9.863045e-01   p_joint 1.390455e-02

Joint ci ratio: 7.194361e-02	ci left: 1.228478e-02	ci right 1.320582e-02	k: 2930	n:230000
Cons ci ratio: 9.637906e-04	ci left: 9.858077e-01	ci right 9.867626e-01	k: 226847	n:230000
KS ci ratio: 1.175874e-01	ci left: 4.525840e-03	ci right 5.095445e-03	k: 1105	n:230000
FER1L5   230000 perm   97 sec   (2383 perm/sec)   p_kst 4.804348e-03   p_cons 9.862913e-01   p_joint 1.273913e-02

Joint ci ratio: 7.162970e-02	ci left: 1.188331e-02	ci right 1.277019e-02	k: 2957	n:240000
Cons ci ratio: 9.389639e-04	ci left: 9.859498e-01	ci right 9.868801e-01	k: 236741	n:240000
KS ci ratio: 1.156712e-01	ci left: 4.486927e-03	ci right 5.041804e-03	k: 1142	n:240000
FER1L5   240000 perm   102 sec   (2357 perm/sec)   p_kst 4.758333e-03   p_cons 9.864208e-01   p_joint 1.232083e-02

Joint ci ratio: 7.139156e-02	ci left: 1.149039e-02	ci right 1.234498e-02	k: 2978	n:250000
Cons ci ratio: 9.176789e-04	ci left: 9.860277e-01	ci right 9.869369e-01	k: 246622	n:250000
KS ci ratio: 1.134600e-01	ci left: 4.482291e-03	ci right 5.025288e-03	k: 1187	n:250000
FER1L5   250000 perm   107 sec   (2330 perm/sec)   p_kst 4.748000e-03   p_cons 9.864880e-01   p_joint 1.191200e-02

Joint ci ratio: 6.409842e-02	ci left: 1.372601e-02	ci right 1.463872e-02	k: 3686	n:260000
Cons ci ratio: 9.004865e-04	ci left: 9.860178e-01	ci right 9.869098e-01	k: 256482	n:260000
KS ci ratio: 1.114162e-01	ci left: 4.474366e-03	ci right 5.005998e-03	k: 1231	n:260000
FER1L5   260000 perm   113 sec   (2306 perm/sec)   p_kst 4.734615e-03   p_cons 9.864692e-01   p_joint 1.417692e-02

Joint ci ratio: 6.560161e-02	ci left: 1.262348e-02	ci right 1.348331e-02	k: 3523	n:270000
Cons ci ratio: 9.103181e-04	ci left: 9.851962e-01	ci right 9.860971e-01	k: 266126	n:270000
KS ci ratio: 1.089655e-01	ci left: 4.510344e-03	ci right 5.033706e-03	k: 1287	n:270000
FER1L5   270000 perm   118 sec   (2283 perm/sec)   p_kst 4.766667e-03   p_cons 9.856519e-01   p_joint 1.304815e-02

Joint ci ratio: 6.556060e-02	ci left: 1.219363e-02	ci right 1.302364e-02	k: 3529	n:280000
Cons ci ratio: 8.935178e-04	ci left: 9.852171e-01	ci right 9.861013e-01	k: 275986	n:280000
KS ci ratio: 1.075578e-01	ci left: 4.467396e-03	ci right 4.978653e-03	k: 1321	n:280000
FER1L5   280000 perm   124 sec   (2260 perm/sec)   p_kst 4.717857e-03   p_cons 9.856643e-01   p_joint 1.260357e-02

Joint ci ratio: 6.445669e-02	ci left: 1.218701e-02	ci right 1.300208e-02	k: 3651	n:290000
Cons ci ratio: 8.727799e-04	ci left: 9.853943e-01	ci right 9.862580e-01	k: 285891	n:290000
KS ci ratio: 1.055406e-01	ci left: 4.484525e-03	ci right 4.987520e-03	k: 1372	n:290000
FER1L5   290000 perm   130 sec   (2238 perm/sec)   p_kst 4.731034e-03   p_cons 9.858310e-01   p_joint 1.258966e-02

Joint ci ratio: 6.423046e-02	ci left: 1.186927e-02	ci right 1.266019e-02	k: 3678	n:300000
Cons ci ratio: 8.554735e-04	ci left: 9.854886e-01	ci right 9.863353e-01	k: 295775	n:300000
KS ci ratio: 1.031968e-01	ci left: 4.539566e-03	ci right 5.036741e-03	k: 1435	n:300000
FER1L5   300000 perm   136 sec   (2213 perm/sec)   p_kst 4.783333e-03   p_cons 9.859167e-01   p_joint 1.226000e-02

Joint ci ratio: 6.125440e-02	ci left: 1.263914e-02	ci right 1.344097e-02	k: 4041	n:310000
Cons ci ratio: 8.416734e-04	ci left: 9.854919e-01	ci right 9.863248e-01	k: 305633	n:310000
KS ci ratio: 1.014112e-01	ci left: 4.553437e-03	ci right 5.042988e-03	k: 1486	n:310000
FER1L5   310000 perm   141 sec   (2192 perm/sec)   p_kst 4.793548e-03   p_cons 9.859129e-01   p_joint 1.303548e-02

Joint ci ratio: 6.144434e-02	ci left: 1.217331e-02	ci right 1.294806e-02	k: 4018	n:320000
Cons ci ratio: 8.285203e-04	ci left: 9.854950e-01	ci right 9.863149e-01	k: 315491	n:320000
KS ci ratio: 9.997674e-02	ci left: 4.542131e-03	ci right 5.023155e-03	k: 1529	n:320000
FER1L5   320000 perm   147 sec   (2171 perm/sec)   p_kst 4.778125e-03   p_cons 9.859094e-01   p_joint 1.255625e-02

Outputting figure to mutsig2_images.part000000000064/FER1L5.6_6490_320000_0.0047781_0.98591_0.012556.png
                gene_name: FER1L5
               theta_stop: 0.100 
                    nperm: 320000 
                     p_ks: 0.0048 
        ci_ks_bounds_left: 0.0045 
       ci_ks_bounds_right: 0.0050 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 27 percent done.
FBXW10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.951078e-03	ci left: 9.660453e-01	ci right 9.728776e-01	k: 9696	n:10000
KS ci ratio: 1.392492e-02	ci left: 8.816556e-01	ci right 8.941174e-01	k: 8880	n:10000
FBXW10   10000 perm   2 sec   (4859 perm/sec)   p_kst 8.880000e-01   p_cons 9.696000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FBXW10.5_3212_10000_0.888_0.9696_1.png
                gene_name: FBXW10
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
FCHO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.190533e-02	ci left: 4.567830e-01	ci right 4.764365e-01	k: 4666	n:10000
Cons ci ratio: 8.315853e-02	ci left: 1.741859e-01	ci right 1.893999e-01	k: 1817	n:10000
KS ci ratio: 2.765834e-02	ci left: 6.582693e-01	ci right 6.768330e-01	k: 6676	n:10000
FCHO1   10000 perm   2 sec   (5084 perm/sec)   p_kst 6.676000e-01   p_cons 1.817000e-01   p_joint 4.666000e-01

Outputting figure to mutsig2_images.part000000000064/FCHO1.5_2788_10000_0.6676_0.1817_0.4666.png
                gene_name: FCHO1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 30 percent done.
FERD3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.865692e-02	ci left: 3.839072e-01	ci right 4.031548e-01	k: 3935	n:10000
KS ci ratio: 1.658537e-02	ci left: 8.410158e-01	ci right 8.551807e-01	k: 8482	n:10000
FERD3L   10000 perm   1 sec   (6869 perm/sec)   p_kst 8.482000e-01   p_cons 3.935000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FERD3L.5_505_10000_0.8482_0.3935_1.png
                gene_name: FERD3L
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
FEZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.121859e-02	ci left: 7.650660e-01	ci right 7.815745e-01	k: 7734	n:10000
Cons ci ratio: 2.101274e-02	ci left: 7.685089e-01	ci right 7.849296e-01	k: 7768	n:10000
KS ci ratio: 3.456684e-02	ci left: 5.527100e-01	ci right 5.722536e-01	k: 5625	n:10000
FEZ1   10000 perm   2 sec   (6014 perm/sec)   p_kst 5.625000e-01   p_cons 7.768000e-01   p_joint 7.734000e-01

Outputting figure to mutsig2_images.part000000000064/FEZ1.5_1219_10000_0.5625_0.7768_0.7734.png
                gene_name: FEZ1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 34 percent done.
FGD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.742191e-02	ci left: 6.620951e-01	ci right 6.806050e-01	k: 6714	n:10000
Cons ci ratio: 5.197341e-02	ci left: 3.530692e-01	ci right 3.720109e-01	k: 3625	n:10000
KS ci ratio: 2.851646e-02	ci left: 6.444822e-01	ci right 6.632281e-01	k: 6539	n:10000
FGD5   10000 perm   2 sec   (4635 perm/sec)   p_kst 6.539000e-01   p_cons 3.625000e-01   p_joint 6.714000e-01

Outputting figure to mutsig2_images.part000000000064/FGD5.5_4469_10000_0.6539_0.3625_0.6714.png
                gene_name: FGD5
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 36 percent done.
FGF14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.813948e-02	ci left: 6.505193e-01	ci right 6.691875e-01	k: 6599	n:10000
Cons ci ratio: 3.767188e-02	ci left: 5.099533e-01	ci right 5.296352e-01	k: 5198	n:10000
KS ci ratio: 3.409876e-02	ci left: 5.594255e-01	ci right 5.789342e-01	k: 5692	n:10000
FGF14   10000 perm   2 sec   (6251 perm/sec)   p_kst 5.692000e-01   p_cons 5.198000e-01   p_joint 6.599000e-01

Outputting figure to mutsig2_images.part000000000064/FGF14.5_976_10000_0.5692_0.5198_0.6599.png
                gene_name: FGF14
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 38 percent done.
FBXO9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.226381e-02	ci left: 5.864060e-01	ci right 6.057380e-01	k: 5961	n:10000
Cons ci ratio: 2.375459e-02	ci left: 7.225963e-01	ci right 7.400688e-01	k: 7314	n:10000
KS ci ratio: 4.890240e-02	ci left: 3.815183e-01	ci right 4.007452e-01	k: 3911	n:10000
FBXO9   10000 perm   2 sec   (6215 perm/sec)   p_kst 3.911000e-01   p_cons 7.314000e-01   p_joint 5.961000e-01

Outputting figure to mutsig2_images.part000000000064/FBXO9.4_1399_10000_0.3911_0.7314_0.5961.png
                gene_name: FBXO9
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 39 percent done.
FBXW8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.824610e-02	ci left: 6.488086e-01	ci right 6.674992e-01	k: 6582	n:10000
Cons ci ratio: 3.521033e-02	ci left: 5.435919e-01	ci right 5.631770e-01	k: 5534	n:10000
KS ci ratio: 3.996185e-02	ci left: 4.804561e-01	ci right 5.001496e-01	k: 4903	n:10000
FBXW8   10000 perm   2 sec   (5338 perm/sec)   p_kst 4.903000e-01   p_cons 5.534000e-01   p_joint 6.582000e-01

Outputting figure to mutsig2_images.part000000000064/FBXW8.4_1841_10000_0.4903_0.5534_0.6582.png
                gene_name: FBXW8
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 41 percent done.
FCRL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.681007e-02	ci left: 8.374510e-01	ci right 8.517477e-01	k: 8447	n:10000
Cons ci ratio: 3.715456e-02	ci left: 5.168576e-01	ci right 5.365269e-01	k: 5267	n:10000
KS ci ratio: 5.060454e-03	ci left: 9.810225e-01	ci right 9.860902e-01	k: 9837	n:10000
FCRL2   10000 perm   2 sec   (5472 perm/sec)   p_kst 9.837000e-01   p_cons 5.267000e-01   p_joint 8.447000e-01

Outputting figure to mutsig2_images.part000000000064/FCRL2.4_1575_10000_0.9837_0.5267_0.8447.png
                gene_name: FCRL2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 43 percent done.
FCRL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.375114e-02	ci left: 3.377653e-01	ci right 3.565238e-01	k: 3471	n:10000
Cons ci ratio: 3.171070e-02	ci left: 5.947369e-01	ci right 6.140022e-01	k: 6044	n:10000
KS ci ratio: 8.472899e-02	ci left: 1.687778e-01	ci right 1.838112e-01	k: 1762	n:10000
FCRL4   10000 perm   2 sec   (5728 perm/sec)   p_kst 1.762000e-01   p_cons 6.044000e-01   p_joint 3.471000e-01

Outputting figure to mutsig2_images.part000000000064/FCRL4.4_1596_10000_0.1762_0.6044_0.3471.png
                gene_name: FCRL4
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 45 percent done.
FCRLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.525351e-02	ci left: 4.188726e-01	ci right 4.383690e-01	k: 4286	n:10000
Cons ci ratio: 6.909288e-02	ci left: 2.350148e-01	ci right 2.519349e-01	k: 2434	n:10000
KS ci ratio: 3.098618e-02	ci left: 6.057823e-01	ci right 6.249505e-01	k: 6154	n:10000
FCRLB   10000 perm   2 sec   (5906 perm/sec)   p_kst 6.154000e-01   p_cons 2.434000e-01   p_joint 4.286000e-01

Outputting figure to mutsig2_images.part000000000064/FCRLB.4_1305_10000_0.6154_0.2434_0.4286.png
                gene_name: FCRLB
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 46 percent done.
FEN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.296142e-02	ci left: 8.954920e-01	ci right 9.072730e-01	k: 9015	n:10000
KS ci ratio: 1.140663e-02	ci left: 9.165701e-01	ci right 9.271826e-01	k: 9220	n:10000
FEN1   10000 perm   2 sec   (5926 perm/sec)   p_kst 9.220000e-01   p_cons 9.015000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FEN1.4_1147_10000_0.922_0.9015_1.png
                gene_name: FEN1
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
FGD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.093572e-02	ci left: 1.822537e-01	ci right 1.977273e-01	k: 1899	n:10000
Cons ci ratio: 2.709942e-02	ci left: 6.673314e-01	ci right 6.857657e-01	k: 6766	n:10000
KS ci ratio: 1.275454e-01	ci left: 8.077027e-02	ci right 9.187210e-02	k: 862	n:10000
FGD2   10000 perm   2 sec   (5942 perm/sec)   p_kst 8.620000e-02   p_cons 6.766000e-01   p_joint 1.899000e-01

Joint ci ratio: 5.426046e-02	ci left: 2.013038e-01	ci right 2.125815e-01	k: 4138	n:20000
Cons ci ratio: 1.910814e-02	ci left: 6.713232e-01	ci right 6.843251e-01	k: 13557	n:20000
KS ci ratio: 9.195033e-02	ci left: 7.945708e-02	ci right 8.716457e-02	k: 1665	n:20000
FGD2   20000 perm   4 sec   (5158 perm/sec)   p_kst 8.325000e-02   p_cons 6.778500e-01   p_joint 2.069000e-01

Outputting figure to mutsig2_images.part000000000064/FGD2.4_2032_20000_0.08325_0.67785_0.2069.png
                gene_name: FGD2
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 50 percent done.
FGD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.328347e-02	ci left: 7.304755e-01	ci right 7.477850e-01	k: 7392	n:10000
Cons ci ratio: 6.476759e-02	ci left: 2.593375e-01	ci right 2.767978e-01	k: 2680	n:10000
KS ci ratio: 1.826768e-02	ci left: 8.139530e-01	ci right 8.290592e-01	k: 8216	n:10000
FGD4   10000 perm   2 sec   (5651 perm/sec)   p_kst 8.216000e-01   p_cons 2.680000e-01   p_joint 7.392000e-01

Outputting figure to mutsig2_images.part000000000064/FGD4.4_2361_10000_0.8216_0.268_0.7392.png
                gene_name: FGD4
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 52 percent done.
FBXO7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.884054e-01	ci left: 4.844389e-03	ci right 8.053335e-03	k: 63	n:10000
Cons ci ratio: 5.177092e-01	ci left: 4.232871e-03	ci right 7.265981e-03	k: 56	n:10000
KS ci ratio: 1.994172e-01	ci left: 3.348089e-02	ci right 4.099178e-02	k: 371	n:10000
FBXO7   10000 perm   2 sec   (5838 perm/sec)   p_kst 3.710000e-02   p_cons 5.600000e-03   p_joint 6.300000e-03

Joint ci ratio: 2.564170e-01	ci left: 1.006870e-02	ci right 1.307582e-02	k: 230	n:20000
Cons ci ratio: 3.815379e-01	ci left: 4.250695e-03	ci right 6.297200e-03	k: 104	n:20000
KS ci ratio: 1.441613e-01	ci left: 3.307475e-02	ci right 3.826138e-02	k: 712	n:20000
FBXO7   20000 perm   4 sec   (4936 perm/sec)   p_kst 3.560000e-02   p_cons 5.200000e-03   p_joint 1.150000e-02

Joint ci ratio: 1.946858e-01	ci left: 1.203433e-02	ci right 1.466117e-02	k: 399	n:30000
Cons ci ratio: 3.100462e-01	ci left: 4.479162e-03	ci right 6.152174e-03	k: 158	n:30000
KS ci ratio: 1.187775e-01	ci left: 3.294884e-02	ci right 3.714183e-02	k: 1050	n:30000
FBXO7   30000 perm   6 sec   (4701 perm/sec)   p_kst 3.500000e-02   p_cons 5.266667e-03   p_joint 1.330000e-02

Joint ci ratio: 1.479373e-01	ci left: 1.597260e-02	ci right 1.854817e-02	k: 689	n:40000
Cons ci ratio: 2.666190e-01	ci left: 4.658727e-03	ci right 6.114498e-03	k: 214	n:40000
KS ci ratio: 1.034141e-01	ci left: 3.287904e-02	ci right 3.648892e-02	k: 1386	n:40000
FBXO7   40000 perm   9 sec   (4583 perm/sec)   p_kst 3.465000e-02   p_cons 5.350000e-03   p_joint 1.722500e-02

Joint ci ratio: 1.654670e-01	ci left: 1.018095e-02	ci right 1.203646e-02	k: 554	n:50000
Cons ci ratio: 2.084964e-01	ci left: 6.287958e-03	ci right 7.770145e-03	k: 350	n:50000
KS ci ratio: 9.355686e-02	ci left: 3.233085e-02	ci right 3.552356e-02	k: 1695	n:50000
FBXO7   50000 perm   11 sec   (4478 perm/sec)   p_kst 3.390000e-02   p_cons 7.000000e-03   p_joint 1.108000e-02

Joint ci ratio: 2.206370e-01	ci left: 4.655960e-03	ci right 5.826015e-03	k: 313	n:60000
Cons ci ratio: 1.908331e-01	ci left: 6.316740e-03	ci right 7.664943e-03	k: 418	n:60000
KS ci ratio: 8.658380e-02	ci left: 3.160124e-02	ci right 3.447749e-02	k: 1981	n:60000
FBXO7   60000 perm   14 sec   (4361 perm/sec)   p_kst 3.301667e-02   p_cons 6.966667e-03   p_joint 5.216667e-03

Joint ci ratio: 2.021547e-01	ci left: 4.802700e-03	ci right 5.896062e-03	k: 373	n:70000
Cons ci ratio: 1.762844e-01	ci left: 6.395741e-03	ci right 7.645649e-03	k: 490	n:70000
KS ci ratio: 8.022092e-02	ci left: 3.166089e-02	ci right 3.432086e-02	k: 2308	n:70000
FBXO7   70000 perm   16 sec   (4278 perm/sec)   p_kst 3.297143e-02   p_cons 7.000000e-03   p_joint 5.328571e-03

Joint ci ratio: 1.493521e-01	ci left: 7.899547e-03	ci right 9.186475e-03	k: 682	n:80000
Cons ci ratio: 1.659662e-01	ci left: 6.350054e-03	ci right 7.511137e-03	k: 553	n:80000
KS ci ratio: 7.271884e-02	ci left: 3.377397e-02	ci right 3.633489e-02	k: 2803	n:80000
FBXO7   80000 perm   19 sec   (4199 perm/sec)   p_kst 3.503750e-02   p_cons 6.912500e-03   p_joint 8.525000e-03

Joint ci ratio: 1.454017e-01	ci left: 7.428339e-03	ci right 8.603703e-03	k: 720	n:90000
Cons ci ratio: 1.571423e-01	ci left: 6.326862e-03	ci right 7.416398e-03	k: 617	n:90000
KS ci ratio: 6.872388e-02	ci left: 3.368858e-02	ci right 3.609707e-02	k: 3139	n:90000
FBXO7   90000 perm   22 sec   (4120 perm/sec)   p_kst 3.487778e-02   p_cons 6.855556e-03   p_joint 8.000000e-03

Joint ci ratio: 1.464872e-01	ci left: 6.588946e-03	ci right 7.639948e-03	k: 710	n:100000
Cons ci ratio: 1.479615e-01	ci left: 6.454070e-03	ci right 7.494835e-03	k: 696	n:100000
KS ci ratio: 6.520584e-02	ci left: 3.374149e-02	ci right 3.602559e-02	k: 3487	n:100000
FBXO7   100000 perm   25 sec   (4041 perm/sec)   p_kst 3.487000e-02   p_cons 6.960000e-03   p_joint 7.100000e-03

Joint ci ratio: 1.430333e-01	ci left: 6.296539e-03	ci right 7.275192e-03	k: 745	n:110000
Cons ci ratio: 1.420776e-01	ci left: 6.384226e-03	ci right 7.369317e-03	k: 755	n:110000
KS ci ratio: 6.214451e-02	ci left: 3.382318e-02	ci right 3.600143e-02	k: 3839	n:110000
FBXO7   110000 perm   28 sec   (3969 perm/sec)   p_kst 3.490000e-02   p_cons 6.863636e-03   p_joint 6.772727e-03

Joint ci ratio: 1.431706e-01	ci left: 5.763678e-03	ci right 6.660437e-03	k: 744	n:120000
Cons ci ratio: 1.365911e-01	ci left: 6.350858e-03	ci right 7.289880e-03	k: 817	n:120000
KS ci ratio: 5.961020e-02	ci left: 3.374550e-02	ci right 3.582706e-02	k: 4173	n:120000
FBXO7   120000 perm   31 sec   (3899 perm/sec)   p_kst 3.477500e-02   p_cons 6.808333e-03   p_joint 6.200000e-03

Joint ci ratio: 1.241732e-01	ci left: 7.135071e-03	ci right 8.087090e-03	k: 988	n:130000
Cons ci ratio: 1.313196e-01	ci left: 6.360449e-03	ci right 7.261762e-03	k: 884	n:130000
KS ci ratio: 5.719198e-02	ci left: 3.387855e-02	ci right 3.588073e-02	k: 4533	n:130000
FBXO7   130000 perm   34 sec   (3829 perm/sec)   p_kst 3.486923e-02   p_cons 6.800000e-03   p_joint 7.600000e-03

Joint ci ratio: 1.221108e-01	ci left: 6.860739e-03	ci right 7.759848e-03	k: 1022	n:140000
Cons ci ratio: 1.270861e-01	ci left: 6.320843e-03	ci right 7.185490e-03	k: 944	n:140000
KS ci ratio: 5.512193e-02	ci left: 3.390243e-02	ci right 3.583118e-02	k: 4880	n:140000
FBXO7   140000 perm   37 sec   (3763 perm/sec)   p_kst 3.485714e-02   p_cons 6.742857e-03   p_joint 7.300000e-03

Joint ci ratio: 1.363501e-01	ci left: 5.106217e-03	ci right 5.859758e-03	k: 821	n:150000
Cons ci ratio: 1.232372e-01	ci left: 6.286924e-03	ci right 7.118983e-03	k: 1004	n:150000
KS ci ratio: 5.299429e-02	ci left: 3.425990e-02	ci right 3.613145e-02	k: 5278	n:150000
FBXO7   150000 perm   41 sec   (3702 perm/sec)   p_kst 3.518667e-02   p_cons 6.693333e-03   p_joint 5.473333e-03

Joint ci ratio: 1.318542e-01	ci left: 5.131383e-03	ci right 5.861712e-03	k: 878	n:160000
Cons ci ratio: 1.194361e-01	ci left: 6.287912e-03	ci right 7.092620e-03	k: 1069	n:160000
KS ci ratio: 5.134428e-02	ci left: 3.424677e-02	ci right 3.605762e-02	k: 5623	n:160000
FBXO7   160000 perm   44 sec   (3639 perm/sec)   p_kst 3.514375e-02   p_cons 6.681250e-03   p_joint 5.487500e-03

Joint ci ratio: 1.083885e-01	ci left: 7.221260e-03	ci right 8.054486e-03	k: 1297	n:170000
Cons ci ratio: 1.158124e-01	ci left: 6.306270e-03	ci right 7.087167e-03	k: 1137	n:170000
KS ci ratio: 4.997402e-02	ci left: 3.405583e-02	ci right 3.580714e-02	k: 5937	n:170000
FBXO7   170000 perm   47 sec   (3581 perm/sec)   p_kst 3.492353e-02   p_cons 6.688235e-03   p_joint 7.629412e-03

Joint ci ratio: 1.098268e-01	ci left: 6.641639e-03	ci right 7.418810e-03	k: 1264	n:180000
Cons ci ratio: 1.125467e-01	ci left: 6.317516e-03	ci right 7.076281e-03	k: 1204	n:180000
KS ci ratio: 4.864342e-02	ci left: 3.397453e-02	ci right 3.567383e-02	k: 6267	n:180000
FBXO7   180000 perm   51 sec   (3527 perm/sec)   p_kst 3.481667e-02   p_cons 6.688889e-03   p_joint 7.022222e-03

Joint ci ratio: 1.079312e-01	ci left: 6.522450e-03	ci right 7.271661e-03	k: 1309	n:190000
Cons ci ratio: 1.096728e-01	ci left: 6.312495e-03	ci right 7.050046e-03	k: 1268	n:190000
KS ci ratio: 4.743235e-02	ci left: 3.387633e-02	ci right 3.552738e-02	k: 6592	n:190000
FBXO7   190000 perm   55 sec   (3472 perm/sec)   p_kst 3.469474e-02   p_cons 6.673684e-03   p_joint 6.889474e-03

Joint ci ratio: 1.137782e-01	ci left: 5.564179e-03	ci right 6.240263e-03	k: 1179	n:200000
Cons ci ratio: 1.070893e-01	ci left: 6.298464e-03	ci right 7.015947e-03	k: 1330	n:200000
KS ci ratio: 4.630743e-02	ci left: 3.378843e-02	ci right 3.539509e-02	k: 6917	n:200000
FBXO7   200000 perm   59 sec   (3417 perm/sec)   p_kst 3.458500e-02   p_cons 6.650000e-03   p_joint 5.895000e-03

Joint ci ratio: 1.111716e-01	ci left: 5.558381e-03	ci right 6.217275e-03	k: 1235	n:210000
Cons ci ratio: 1.049840e-01	ci left: 6.248852e-03	ci right 6.945825e-03	k: 1384	n:210000
KS ci ratio: 4.524274e-02	ci left: 3.373288e-02	ci right 3.529905e-02	k: 7247	n:210000
FBXO7   210000 perm   62 sec   (3366 perm/sec)   p_kst 3.450952e-02   p_cons 6.590476e-03   p_joint 5.880952e-03

Joint ci ratio: 1.111414e-01	ci left: 5.310109e-03	ci right 5.939388e-03	k: 1236	n:220000
Cons ci ratio: 1.029982e-01	ci left: 6.203876e-03	ci right 6.881951e-03	k: 1438	n:220000
KS ci ratio: 4.416383e-02	ci left: 3.380867e-02	ci right 3.533998e-02	k: 7605	n:220000
FBXO7   220000 perm   66 sec   (3314 perm/sec)   p_kst 3.456818e-02   p_cons 6.536364e-03   p_joint 5.618182e-03

Joint ci ratio: 1.187804e-01	ci left: 4.433003e-03	ci right 4.996981e-03	k: 1083	n:230000
Cons ci ratio: 1.004794e-01	ci left: 6.243464e-03	ci right 6.908193e-03	k: 1511	n:230000
KS ci ratio: 4.323457e-02	ci left: 3.376212e-02	ci right 3.525834e-02	k: 7936	n:230000
FBXO7   230000 perm   71 sec   (3261 perm/sec)   p_kst 3.450435e-02   p_cons 6.569565e-03   p_joint 4.708696e-03

Joint ci ratio: 1.225994e-01	ci left: 3.981538e-03	ci right 4.505546e-03	k: 1017	n:240000
Cons ci ratio: 9.848135e-02	ci left: 6.235224e-03	ci right 6.885112e-03	k: 1573	n:240000
KS ci ratio: 4.235630e-02	ci left: 3.372800e-02	ci right 3.519160e-02	k: 8269	n:240000
FBXO7   240000 perm   75 sec   (3213 perm/sec)   p_kst 3.445417e-02   p_cons 6.554167e-03   p_joint 4.237500e-03

Joint ci ratio: 1.200324e-01	ci left: 3.992937e-03	ci right 4.506661e-03	k: 1061	n:250000
Cons ci ratio: 9.642013e-02	ci left: 6.251188e-03	ci right 6.888332e-03	k: 1641	n:250000
KS ci ratio: 4.141492e-02	ci left: 3.387906e-02	ci right 3.531576e-02	k: 8648	n:250000
FBXO7   250000 perm   79 sec   (3168 perm/sec)   p_kst 3.459200e-02   p_cons 6.564000e-03   p_joint 4.244000e-03

Joint ci ratio: 1.062532e-01	ci left: 4.930890e-03	ci right 5.487920e-03	k: 1353	n:260000
Cons ci ratio: 9.445534e-02	ci left: 6.269811e-03	ci right 6.895110e-03	k: 1710	n:260000
KS ci ratio: 4.055690e-02	ci left: 3.398074e-02	ci right 3.539120e-02	k: 9017	n:260000
FBXO7   260000 perm   83 sec   (3121 perm/sec)   p_kst 3.468077e-02   p_cons 6.576923e-03   p_joint 5.203846e-03

Joint ci ratio: 1.119752e-01	ci left: 4.265420e-03	ci right 4.774935e-03	k: 1219	n:270000
Cons ci ratio: 9.257979e-02	ci left: 6.290795e-03	ci right 6.905054e-03	k: 1780	n:270000
KS ci ratio: 3.981384e-02	ci left: 3.396879e-02	ci right 3.535233e-02	k: 9357	n:270000
FBXO7   270000 perm   88 sec   (3078 perm/sec)   p_kst 3.465556e-02   p_cons 6.592593e-03   p_joint 4.514815e-03

Joint ci ratio: 1.112539e-01	ci left: 4.168620e-03	ci right 4.663153e-03	k: 1235	n:280000
Cons ci ratio: 9.083641e-02	ci left: 6.306902e-03	ci right 6.910521e-03	k: 1849	n:280000
KS ci ratio: 3.908097e-02	ci left: 3.400745e-02	ci right 3.536649e-02	k: 9711	n:280000
FBXO7   280000 perm   93 sec   (3018 perm/sec)   p_kst 3.468214e-02   p_cons 6.603571e-03   p_joint 4.410714e-03

Joint ci ratio: 1.186739e-01	ci left: 3.525770e-03	ci right 3.973893e-03	k: 1086	n:290000
Cons ci ratio: 8.918794e-02	ci left: 6.322000e-03	ci right 6.915510e-03	k: 1918	n:290000
KS ci ratio: 3.838714e-02	ci left: 3.404365e-02	ci right 3.537946e-02	k: 10065	n:290000
FBXO7   290000 perm   97 sec   (2977 perm/sec)   p_kst 3.470690e-02   p_cons 6.613793e-03   p_joint 3.744828e-03

Joint ci ratio: 1.288996e-01	ci left: 2.875182e-03	ci right 3.274513e-03	k: 921	n:300000
Cons ci ratio: 8.773722e-02	ci left: 6.319880e-03	ci right 6.903046e-03	k: 1982	n:300000
KS ci ratio: 3.770276e-02	ci left: 3.412389e-02	ci right 3.543845e-02	k: 10433	n:300000
FBXO7   300000 perm   102 sec   (2940 perm/sec)   p_kst 3.477667e-02   p_cons 6.606667e-03   p_joint 3.070000e-03

Joint ci ratio: 1.280040e-01	ci left: 2.823017e-03	ci right 3.212172e-03	k: 934	n:310000
Cons ci ratio: 8.614351e-02	ci left: 6.349537e-03	ci right 6.924261e-03	k: 2056	n:310000
KS ci ratio: 3.709644e-02	ci left: 3.412242e-02	ci right 3.541533e-02	k: 10777	n:310000
FBXO7   310000 perm   107 sec   (2903 perm/sec)   p_kst 3.476452e-02   p_cons 6.632258e-03   p_joint 3.012903e-03

Joint ci ratio: 1.085000e-01	ci left: 3.842011e-03	ci right 4.285794e-03	k: 1299	n:320000
Cons ci ratio: 8.487450e-02	ci left: 6.340719e-03	ci right 6.905771e-03	k: 2118	n:320000
KS ci ratio: 3.660379e-02	ci left: 3.396632e-02	ci right 3.523587e-02	k: 11071	n:320000
FBXO7   320000 perm   112 sec   (2867 perm/sec)   p_kst 3.459687e-02   p_cons 6.618750e-03   p_joint 4.059375e-03

Joint ci ratio: 1.129545e-01	ci left: 3.430904e-03	ci right 3.844554e-03	k: 1199	n:330000
Cons ci ratio: 8.362138e-02	ci left: 6.338429e-03	ci right 6.894531e-03	k: 2182	n:330000
KS ci ratio: 3.605474e-02	ci left: 3.395798e-02	ci right 3.520779e-02	k: 11411	n:330000
FBXO7   330000 perm   116 sec   (2833 perm/sec)   p_kst 3.457879e-02   p_cons 6.612121e-03   p_joint 3.633333e-03

Joint ci ratio: 1.077256e-01	ci left: 3.670364e-03	ci right 4.091102e-03	k: 1318	n:340000
Cons ci ratio: 8.240371e-02	ci left: 6.339213e-03	ci right 6.886895e-03	k: 2247	n:340000
KS ci ratio: 3.549059e-02	ci left: 3.402316e-02	ci right 3.525537e-02	k: 11776	n:340000
FBXO7   340000 perm   122 sec   (2798 perm/sec)   p_kst 3.463529e-02   p_cons 6.608824e-03   p_joint 3.876471e-03

Joint ci ratio: 1.068809e-01	ci left: 3.623882e-03	ci right 4.035829e-03	k: 1339	n:350000
Cons ci ratio: 8.125543e-02	ci left: 6.337207e-03	ci right 6.876725e-03	k: 2311	n:350000
KS ci ratio: 3.499693e-02	ci left: 3.399977e-02	ci right 3.521366e-02	k: 12111	n:350000
FBXO7   350000 perm   127 sec   (2765 perm/sec)   p_kst 3.460286e-02   p_cons 6.602857e-03   p_joint 3.825714e-03

Joint ci ratio: 1.052820e-01	ci left: 3.634087e-03	ci right 4.040631e-03	k: 1380	n:360000
Cons ci ratio: 7.991717e-02	ci left: 6.373478e-03	ci right 6.906732e-03	k: 2389	n:360000
KS ci ratio: 3.448029e-02	ci left: 3.406043e-02	ci right 3.525818e-02	k: 12476	n:360000
FBXO7   360000 perm   132 sec   (2731 perm/sec)   p_kst 3.465556e-02   p_cons 6.636111e-03   p_joint 3.833333e-03

Joint ci ratio: 1.111337e-01	ci left: 3.165050e-03	ci right 3.540092e-03	k: 1239	n:370000
Cons ci ratio: 7.877155e-02	ci left: 6.386659e-03	ci right 6.913004e-03	k: 2459	n:370000
KS ci ratio: 3.397218e-02	ci left: 3.414475e-02	ci right 3.532742e-02	k: 12851	n:370000
FBXO7   370000 perm   137 sec   (2699 perm/sec)   p_kst 3.473243e-02   p_cons 6.645946e-03   p_joint 3.348649e-03

Joint ci ratio: 9.403112e-02	ci left: 4.338490e-03	ci right 4.769119e-03	k: 1729	n:380000
Cons ci ratio: 7.772022e-02	ci left: 6.391456e-03	ci right 6.910847e-03	k: 2526	n:380000
KS ci ratio: 3.350426e-02	ci left: 3.418820e-02	ci right 3.535575e-02	k: 13212	n:380000
FBXO7   380000 perm   142 sec   (2667 perm/sec)   p_kst 3.476842e-02   p_cons 6.647368e-03   p_joint 4.550000e-03

Outputting figure to mutsig2_images.part000000000064/FBXO7.3_1646_380000_0.034768_0.0066474_0.00455.png
                gene_name: FBXO7
               theta_stop: 0.094 
                    nperm: 380000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.0066 
      ci_cons_bounds_left: 0.0064 
     ci_cons_bounds_right: 0.0069 
                  p_joint: 0.0046 
     ci_joint_bounds_left: 0.0043 
    ci_joint_bounds_right: 0.0048 

Current progress: 54 percent done.
FBXW2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.308563e-02	ci left: 4.430089e-01	ci right 4.626186e-01	k: 4528	n:10000
KS ci ratio: 3.007699e-02	ci left: 6.198475e-01	ci right 6.388771e-01	k: 6294	n:10000
FBXW2   10000 perm   1 sec   (6744 perm/sec)   p_kst 6.294000e-01   p_cons 4.528000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FBXW2.3_1389_10000_0.6294_0.4528_1.png
                gene_name: FBXW2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
FBXW4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.524631e-02	ci left: 6.977684e-01	ci right 7.157111e-01	k: 7068	n:10000
Cons ci ratio: 5.358556e-02	ci left: 3.391561e-01	ci right 3.579322e-01	k: 3485	n:10000
KS ci ratio: 3.364905e-02	ci left: 5.659423e-01	ci right 5.854136e-01	k: 5757	n:10000
FBXW4   10000 perm   2 sec   (6368 perm/sec)   p_kst 5.757000e-01   p_cons 3.485000e-01   p_joint 7.068000e-01

Outputting figure to mutsig2_images.part000000000064/FBXW4.3_1275_10000_0.5757_0.3485_0.7068.png
                gene_name: FBXW4
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 57 percent done.
FCAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.657053e-01	ci left: 1.846678e-02	ci right 2.421679e-02	k: 212	n:10000
Cons ci ratio: 2.973629e-02	ci left: 6.251744e-01	ci right 6.441471e-01	k: 6347	n:10000
KS ci ratio: 2.510420e-01	ci left: 2.080800e-02	ci right 2.687375e-02	k: 237	n:10000
FCAR   10000 perm   2 sec   (6267 perm/sec)   p_kst 2.370000e-02   p_cons 6.347000e-01   p_joint 2.120000e-02

Joint ci ratio: 2.703794e-01	ci left: 8.993904e-03	ci right 1.185112e-02	k: 207	n:20000
Cons ci ratio: 2.101863e-02	ci left: 6.281832e-01	ci right 6.415775e-01	k: 12698	n:20000
KS ci ratio: 1.804519e-01	ci left: 2.096705e-02	ci right 2.517319e-02	k: 460	n:20000
FCAR   20000 perm   4 sec   (5315 perm/sec)   p_kst 2.300000e-02   p_cons 6.349000e-01   p_joint 1.035000e-02

Joint ci ratio: 1.418210e-01	ci left: 2.306968e-02	ci right 2.662315e-02	k: 744	n:30000
Cons ci ratio: 1.712860e-02	ci left: 6.303251e-01	ci right 6.412485e-01	k: 19074	n:30000
KS ci ratio: 1.479429e-01	ci left: 2.117272e-02	ci right 2.458721e-02	k: 685	n:30000
FCAR   30000 perm   6 sec   (5101 perm/sec)   p_kst 2.283333e-02   p_cons 6.358000e-01   p_joint 2.480000e-02

Joint ci ratio: 1.436538e-01	ci left: 1.696081e-02	ci right 1.960978e-02	k: 730	n:40000
Cons ci ratio: 1.489483e-02	ci left: 6.291570e-01	ci right 6.386236e-01	k: 25356	n:40000
KS ci ratio: 1.280273e-01	ci left: 2.143209e-02	ci right 2.438773e-02	k: 915	n:40000
FCAR   40000 perm   8 sec   (4942 perm/sec)   p_kst 2.287500e-02   p_cons 6.339000e-01   p_joint 1.825000e-02

Joint ci ratio: 1.104338e-01	ci left: 2.322098e-02	ci right 2.595460e-02	k: 1228	n:50000
Cons ci ratio: 1.331379e-02	ci left: 6.299605e-01	ci right 6.384239e-01	k: 31710	n:50000
KS ci ratio: 1.153388e-01	ci left: 2.127617e-02	ci right 2.389966e-02	k: 1128	n:50000
FCAR   50000 perm   10 sec   (4810 perm/sec)   p_kst 2.256000e-02   p_cons 6.342000e-01   p_joint 2.456000e-02

Joint ci ratio: 9.388732e-02	ci left: 2.690621e-02	ci right 2.957302e-02	k: 1693	n:60000
Cons ci ratio: 1.211586e-02	ci left: 6.317845e-01	ci right 6.395024e-01	k: 38139	n:60000
KS ci ratio: 1.043789e-01	ci left: 2.176660e-02	ci right 2.417984e-02	k: 1377	n:60000
FCAR   60000 perm   13 sec   (4686 perm/sec)   p_kst 2.295000e-02   p_cons 6.356500e-01   p_joint 2.821667e-02

Joint ci ratio: 9.091427e-02	ci left: 2.469397e-02	ci right 2.705984e-02	k: 1810	n:70000
Cons ci ratio: 1.121454e-02	ci left: 6.321796e-01	ci right 6.393234e-01	k: 44503	n:70000
KS ci ratio: 9.681096e-02	ci left: 2.177665e-02	ci right 2.400600e-02	k: 1601	n:70000
FCAR   70000 perm   15 sec   (4552 perm/sec)   p_kst 2.287143e-02   p_cons 6.357571e-01   p_joint 2.585714e-02

Outputting figure to mutsig2_images.part000000000064/FCAR.3_955_70000_0.022871_0.63576_0.025857.png
                gene_name: FCAR
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 59 percent done.
FCER1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.118695e-02	ci left: 2.820102e-01	ci right 2.999117e-01	k: 2909	n:10000
Cons ci ratio: 3.462305e-02	ci left: 5.519083e-01	ci right 5.714558e-01	k: 5617	n:10000
KS ci ratio: 9.522390e-02	ci left: 1.379571e-01	ci right 1.518505e-01	k: 1448	n:10000
FCER1A   10000 perm   2 sec   (6438 perm/sec)   p_kst 1.448000e-01   p_cons 5.617000e-01   p_joint 2.909000e-01

Outputting figure to mutsig2_images.part000000000064/FCER1A.3_794_10000_0.1448_0.5617_0.2909.png
                gene_name: FCER1A
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 61 percent done.
FCN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.352037e-02	ci left: 2.669579e-01	ci right 2.845729e-01	k: 2757	n:10000
Cons ci ratio: 6.106854e-02	ci left: 2.828028e-01	ci right 3.007187e-01	k: 2917	n:10000
KS ci ratio: 7.348846e-02	ci left: 2.132945e-01	ci right 2.296681e-01	k: 2214	n:10000
FCN2   10000 perm   2 sec   (6240 perm/sec)   p_kst 2.214000e-01   p_cons 2.917000e-01   p_joint 2.757000e-01

Outputting figure to mutsig2_images.part000000000064/FCN2.3_974_10000_0.2214_0.2917_0.2757.png
                gene_name: FCN2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 62 percent done.
FCRLA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.642336e-02	ci left: 5.267670e-01	ci right 5.464117e-01	k: 5366	n:10000
KS ci ratio: 2.662392e-02	ci left: 6.750875e-01	ci right 6.934051e-01	k: 6843	n:10000
FCRLA   10000 perm   2 sec   (6275 perm/sec)   p_kst 6.843000e-01   p_cons 5.366000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FCRLA.3_1173_10000_0.6843_0.5366_1.png
                gene_name: FCRLA
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
FDFT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.551522e-02	ci left: 8.577378e-01	ci right 8.712491e-01	k: 8646	n:10000
Cons ci ratio: 1.759120e-02	ci left: 8.249328e-01	ci right 8.396731e-01	k: 8324	n:10000
KS ci ratio: 3.374555e-02	ci left: 5.645385e-01	ci right 5.840182e-01	k: 5743	n:10000
FDFT1   10000 perm   2 sec   (6079 perm/sec)   p_kst 5.743000e-01   p_cons 8.324000e-01   p_joint 8.646000e-01

Outputting figure to mutsig2_images.part000000000064/FDFT1.3_1286_10000_0.5743_0.8324_0.8646.png
                gene_name: FDFT1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 66 percent done.
FECH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.113893e-02	ci left: 4.659699e-01	ci right 4.856442e-01	k: 4758	n:10000
Cons ci ratio: 2.666705e-02	ci left: 6.743823e-01	ci right 6.927107e-01	k: 6836	n:10000
KS ci ratio: 6.844278e-02	ci left: 2.384731e-01	ci right 2.554745e-01	k: 2469	n:10000
FECH   10000 perm   2 sec   (6265 perm/sec)   p_kst 2.469000e-01   p_cons 6.836000e-01   p_joint 4.758000e-01

Outputting figure to mutsig2_images.part000000000064/FECH.3_1334_10000_0.2469_0.6836_0.4758.png
                gene_name: FECH
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 68 percent done.
FERMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.953258e-02	ci left: 4.858530e-01	ci right 5.055495e-01	k: 4957	n:10000
Cons ci ratio: 1.639181e-02	ci left: 8.440725e-01	ci right 8.581223e-01	k: 8512	n:10000
KS ci ratio: 6.202778e-02	ci left: 2.764632e-01	ci right 2.942620e-01	k: 2853	n:10000
FERMT1   10000 perm   2 sec   (5579 perm/sec)   p_kst 2.853000e-01   p_cons 8.512000e-01   p_joint 4.957000e-01

Outputting figure to mutsig2_images.part000000000064/FERMT1.3_2090_10000_0.2853_0.8512_0.4957.png
                gene_name: FERMT1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 70 percent done.
FERMT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.284292e-02	ci left: 7.378529e-01	ci right 7.550034e-01	k: 7465	n:10000
Cons ci ratio: 4.189691e-02	ci left: 4.568828e-01	ci right 4.765366e-01	k: 4667	n:10000
KS ci ratio: 4.601716e-03	ci left: 9.840410e-01	ci right 9.886693e-01	k: 9865	n:10000
FERMT2   10000 perm   2 sec   (5683 perm/sec)   p_kst 9.865000e-01   p_cons 4.667000e-01   p_joint 7.465000e-01

Outputting figure to mutsig2_images.part000000000064/FERMT2.3_2136_10000_0.9865_0.4667_0.7465.png
                gene_name: FERMT2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 71 percent done.
FETUB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.310950e-02	ci left: 2.695318e-01	ci right 2.871975e-01	k: 2783	n:10000
KS ci ratio: 1.192926e-02	ci left: 9.096710e-01	ci right 9.206857e-01	k: 9153	n:10000
FETUB   10000 perm   2 sec   (6078 perm/sec)   p_kst 9.153000e-01   p_cons 2.783000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FETUB.3_1177_10000_0.9153_0.2783_1.png
                gene_name: FETUB
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
FEZF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.627510e-02	ci left: 4.080090e-01	ci right 4.274390e-01	k: 4177	n:10000
Cons ci ratio: 3.861839e-02	ci left: 4.975503e-01	ci right 5.172454e-01	k: 5074	n:10000
KS ci ratio: 5.424083e-02	ci left: 3.336927e-01	ci right 3.523989e-01	k: 3430	n:10000
FEZF1   10000 perm   2 sec   (6181 perm/sec)   p_kst 3.430000e-01   p_cons 5.074000e-01   p_joint 4.177000e-01

Outputting figure to mutsig2_images.part000000000064/FEZF1.3_1444_10000_0.343_0.5074_0.4177.png
                gene_name: FEZF1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 75 percent done.
FEZF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.724407e-02	ci left: 5.156567e-01	ci right 5.353284e-01	k: 5255	n:10000
Cons ci ratio: 5.614730e-02	ci left: 3.184024e-01	ci right 3.368981e-01	k: 3276	n:10000
KS ci ratio: 3.342233e-02	ci left: 5.692514e-01	ci right 5.887025e-01	k: 5790	n:10000
FEZF2   10000 perm   1 sec   (6774 perm/sec)   p_kst 5.790000e-01   p_cons 3.276000e-01   p_joint 5.255000e-01

Outputting figure to mutsig2_images.part000000000064/FEZF2.3_1396_10000_0.579_0.3276_0.5255.png
                gene_name: FEZF2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 77 percent done.
FFAR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.536816e-02	ci left: 6.957512e-01	ci right 7.137293e-01	k: 7048	n:10000
Cons ci ratio: 3.939054e-02	ci left: 4.876522e-01	ci right 5.073492e-01	k: 4975	n:10000
KS ci ratio: 2.451118e-02	ci left: 7.099764e-01	ci right 7.276960e-01	k: 7189	n:10000
FFAR2   10000 perm   2 sec   (6546 perm/sec)   p_kst 7.189000e-01   p_cons 4.975000e-01   p_joint 7.048000e-01

Outputting figure to mutsig2_images.part000000000064/FFAR2.3_997_10000_0.7189_0.4975_0.7048.png
                gene_name: FFAR2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 79 percent done.
FGF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.453827e-02	ci left: 1.397211e-01	ci right 1.536854e-01	k: 1466	n:10000
Cons ci ratio: 1.244911e-01	ci left: 8.455810e-02	ci right 9.588194e-02	k: 901	n:10000
KS ci ratio: 4.841319e-02	ci left: 3.862964e-01	ci right 4.055643e-01	k: 3959	n:10000
FGF11   10000 perm   2 sec   (6453 perm/sec)   p_kst 3.959000e-01   p_cons 9.010000e-02   p_joint 1.466000e-01

Joint ci ratio: 5.625515e-02	ci left: 1.898254e-01	ci right 2.008633e-01	k: 3906	n:20000
Cons ci ratio: 8.741912e-02	ci left: 8.734272e-02	ci right 9.537654e-02	k: 1826	n:20000
KS ci ratio: 3.448117e-02	ci left: 3.857236e-01	ci right 3.993077e-01	k: 7850	n:20000
FGF11   20000 perm   4 sec   (5633 perm/sec)   p_kst 3.925000e-01   p_cons 9.130000e-02   p_joint 1.953000e-01

Outputting figure to mutsig2_images.part000000000064/FGF11.3_698_20000_0.3925_0.0913_0.1953.png
                gene_name: FGF11
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 80 percent done.
FGF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.097639e-02	ci left: 7.691165e-01	ci right 7.855216e-01	k: 7774	n:10000
KS ci ratio: 2.370625e-02	ci left: 7.234042e-01	ci right 7.408604e-01	k: 7322	n:10000
FGF12   10000 perm   1 sec   (7222 perm/sec)   p_kst 7.322000e-01   p_cons 7.774000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FGF12.3_769_10000_0.7322_0.7774_1.png
                gene_name: FGF12
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
FGF13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.938760e-03	ci left: 9.879601e-01	ci right 9.919467e-01	k: 9901	n:10000
Cons ci ratio: 1.135109e-02	ci left: 9.172915e-01	ci right 9.278607e-01	k: 9227	n:10000
KS ci ratio: 2.815202e-02	ci left: 6.503180e-01	ci right 6.689889e-01	k: 6597	n:10000
FGF13   10000 perm   2 sec   (6558 perm/sec)   p_kst 6.597000e-01   p_cons 9.227000e-01   p_joint 9.901000e-01

Outputting figure to mutsig2_images.part000000000064/FGF13.3_1015_10000_0.6597_0.9227_0.9901.png
                gene_name: FGF13
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 84 percent done.
FBXW12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.559995e-02	ci left: 6.919193e-01	ci right 7.099635e-01	k: 7010	n:10000
KS ci ratio: 5.409992e-03	ci left: 9.785573e-01	ci right 9.839571e-01	k: 9814	n:10000
FBXW12   10000 perm   2 sec   (6382 perm/sec)   p_kst 9.814000e-01   p_cons 7.010000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FBXW12.2_1472_10000_0.9814_0.701_1.png
                gene_name: FBXW12
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
FCRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.408720e-02	ci left: 7.170425e-01	ci right 7.346258e-01	k: 7259	n:10000
Cons ci ratio: 1.641767e-02	ci left: 8.436649e-01	ci right 8.577302e-01	k: 8508	n:10000
KS ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
FCRL1   10000 perm   2 sec   (6550 perm/sec)   p_kst 1.292000e-01   p_cons 8.508000e-01   p_joint 7.259000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.172464e-02	ci left: 8.432021e-01	ci right 8.531964e-01	k: 16965	n:20000
KS ci ratio: 7.178468e-02	ci left: 1.250728e-01	ci right 1.344351e-01	k: 2594	n:20000
FCRL1   20000 perm   4 sec   (5623 perm/sec)   p_kst 1.297000e-01   p_cons 8.482500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FCRL1.2_1400_20000_0.1297_0.84825_1.png
                gene_name: FCRL1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
FDXACB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.670404e-02	ci left: 6.737778e-01	ci right 6.921155e-01	k: 6830	n:10000
Cons ci ratio: 4.201491e-02	ci left: 4.554851e-01	ci right 4.751351e-01	k: 4653	n:10000
KS ci ratio: 5.598207e-02	ci left: 3.196927e-01	ci right 3.382070e-01	k: 3289	n:10000
FDXACB1   10000 perm   2 sec   (5969 perm/sec)   p_kst 3.289000e-01   p_cons 4.653000e-01   p_joint 6.830000e-01

Outputting figure to mutsig2_images.part000000000064/FDXACB1.2_1895_10000_0.3289_0.4653_0.683.png
                gene_name: FDXACB1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 89 percent done.
FERMT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.786218e-02	ci left: 1.586572e-01	ci right 1.733379e-01	k: 1659	n:10000
Cons ci ratio: 1.999762e-01	ci left: 3.329057e-02	ci right 4.078224e-02	k: 369	n:10000
KS ci ratio: 3.196322e-02	ci left: 5.909224e-01	ci right 6.102190e-01	k: 6006	n:10000
FERMT3   10000 perm   2 sec   (5966 perm/sec)   p_kst 6.006000e-01   p_cons 3.690000e-02   p_joint 1.659000e-01

Joint ci ratio: 9.108822e-02	ci left: 8.087673e-02	ci right 8.864449e-02	k: 1694	n:20000
Cons ci ratio: 1.454352e-01	ci left: 3.249578e-02	ci right 3.764054e-02	k: 700	n:20000
KS ci ratio: 2.270641e-02	ci left: 5.915671e-01	ci right 6.052043e-01	k: 11968	n:20000
FERMT3   20000 perm   4 sec   (5253 perm/sec)   p_kst 5.984000e-01   p_cons 3.500000e-02   p_joint 8.470000e-02

Joint ci ratio: 4.769746e-02	ci left: 1.793652e-01	ci right 1.881628e-01	k: 5512	n:30000
Cons ci ratio: 1.202678e-01	ci left: 3.213961e-02	ci right 3.628457e-02	k: 1025	n:30000
KS ci ratio: 1.855676e-02	ci left: 5.923925e-01	ci right 6.035219e-01	k: 17939	n:30000
FERMT3   30000 perm   6 sec   (4980 perm/sec)   p_kst 5.979667e-01   p_cons 3.416667e-02   p_joint 1.837333e-01

Joint ci ratio: 4.585062e-02	ci left: 1.509460e-01	ci right 1.580543e-01	k: 6179	n:40000
Cons ci ratio: 1.048317e-01	ci left: 3.200171e-02	ci right 3.556639e-02	k: 1350	n:40000
KS ci ratio: 1.596875e-02	ci left: 5.962065e-01	ci right 6.058289e-01	k: 24041	n:40000
FERMT3   40000 perm   8 sec   (4819 perm/sec)   p_kst 6.010250e-01   p_cons 3.375000e-02   p_joint 1.544750e-01

Joint ci ratio: 3.784852e-02	ci left: 1.732863e-01	ci right 1.799913e-01	k: 8831	n:50000
Cons ci ratio: 9.321605e-02	ci left: 3.256543e-02	ci right 3.576895e-02	k: 1707	n:50000
KS ci ratio: 1.423432e-02	ci left: 5.983549e-01	ci right 6.069532e-01	k: 30133	n:50000
FERMT3   50000 perm   11 sec   (4683 perm/sec)   p_kst 6.026600e-01   p_cons 3.414000e-02   p_joint 1.766200e-01

Outputting figure to mutsig2_images.part000000000064/FERMT3.2_2060_50000_0.60266_0.03414_0.17662.png
                gene_name: FERMT3
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 91 percent done.
FEZ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.476599e-02	ci left: 7.057380e-01	ci right 7.235368e-01	k: 7147	n:10000
Cons ci ratio: 1.575937e-02	ci left: 8.539624e-01	ci right 8.676267e-01	k: 8609	n:10000
KS ci ratio: 5.455513e-02	ci left: 3.311104e-01	ci right 3.497826e-01	k: 3404	n:10000
FEZ2   10000 perm   2 sec   (6632 perm/sec)   p_kst 3.404000e-01   p_cons 8.609000e-01   p_joint 7.147000e-01

Outputting figure to mutsig2_images.part000000000064/FEZ2.2_1179_10000_0.3404_0.8609_0.7147.png
                gene_name: FEZ2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 93 percent done.
FGB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.618013e-02	ci left: 4.090055e-01	ci right 4.284419e-01	k: 4187	n:10000
Cons ci ratio: 4.051743e-02	ci left: 4.735616e-01	ci right 4.932481e-01	k: 4834	n:10000
KS ci ratio: 3.580541e-02	ci left: 5.352782e-01	ci right 5.548955e-01	k: 5451	n:10000
FGB   10000 perm   2 sec   (5909 perm/sec)   p_kst 5.451000e-01   p_cons 4.834000e-01   p_joint 4.187000e-01

Outputting figure to mutsig2_images.part000000000064/FGB.2_1508_10000_0.5451_0.4834_0.4187.png
                gene_name: FGB
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 95 percent done.
FGD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.970216e-02	ci left: 3.738555e-01	ci right 3.930125e-01	k: 3834	n:10000
Cons ci ratio: 9.224974e-03	ci left: 9.430505e-01	ci right 9.518865e-01	k: 9476	n:10000
KS ci ratio: 8.386407e-02	ci left: 1.717274e-01	ci right 1.868599e-01	k: 1792	n:10000
FGD3   10000 perm   2 sec   (6086 perm/sec)   p_kst 1.792000e-01   p_cons 9.476000e-01   p_joint 3.834000e-01

Outputting figure to mutsig2_images.part000000000064/FGD3.2_2242_10000_0.1792_0.9476_0.3834.png
                gene_name: FGD3
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 96 percent done.
FGF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.116695e-01	ci left: 1.035416e-01	ci right 1.158868e-01	k: 1096	n:10000
KS ci ratio: 2.859208e-02	ci left: 6.432750e-01	ci right 6.620360e-01	k: 6527	n:10000
FGF1   10000 perm   1 sec   (6983 perm/sec)   p_kst 6.527000e-01   p_cons 1.096000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.888301e-02	ci left: 1.055482e-01	ci right 1.142656e-01	k: 2197	n:20000
KS ci ratio: 2.025417e-02	ci left: 6.452513e-01	ci right 6.585045e-01	k: 13038	n:20000
FGF1   20000 perm   3 sec   (6055 perm/sec)   p_kst 6.519000e-01   p_cons 1.098500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000064/FGF1.2_480_20000_0.6519_0.10985_1.png
                gene_name: FGF1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
FGF20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.573437e-02	ci left: 1.654360e-01	ci right 1.803551e-01	k: 1728	n:10000
Cons ci ratio: 5.065070e-02	ci left: 3.650016e-01	ci right 3.840715e-01	k: 3745	n:10000
KS ci ratio: 1.325683e-01	ci left: 7.504646e-02	ci right 8.579947e-02	k: 803	n:10000
FGF20   10000 perm   1 sec   (6964 perm/sec)   p_kst 8.030000e-02   p_cons 3.745000e-01   p_joint 1.728000e-01

Joint ci ratio: 4.212495e-02	ci left: 2.957405e-01	ci right 3.085171e-01	k: 6042	n:20000
Cons ci ratio: 3.587650e-02	ci left: 3.670388e-01	ci right 3.804979e-01	k: 7475	n:20000
KS ci ratio: 9.186014e-02	ci left: 7.960393e-02	ci right 8.731768e-02	k: 1668	n:20000
FGF20   20000 perm   3 sec   (6038 perm/sec)   p_kst 8.340000e-02   p_cons 3.737500e-01   p_joint 3.021000e-01

Outputting figure to mutsig2_images.part000000000064/FGF20.2_648_20000_0.0834_0.37375_0.3021.png
                gene_name: FGF20
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000064
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 64 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1540>
Subject: Job 9893941: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1540>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000065> was used as the working directory.
Started at Sat Oct  6 00:08:19 2012
Results reported at Sat Oct  6 00:46:42 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000065.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000065.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 65  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000065.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2457.03 sec.
    Max Memory :      3601 MB
    Max Swap   :      5939 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
65
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 65
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 65: processing genes 5771 - 5860
Calculating significance of each gene.
Using projection method.
5771	FGF21	6.370505e-01
5772	FGF22	1
5773	FGF23	6.764266e-01
5774	FGF3	3.709104e-01
5775	FGF4	1
5776	FGF5	1.746750e-01
5777	FGF6	1.223971e-01
5778	FGF7	3.996169e-01
5779	FGF8	6.999583e-01
5780	FGF9	5.571579e-01
5781	FGFBP1	1.231711e-01
5782	FGFBP2	1
5783	FGFBP3	1
5784	FGFR1	9.458360e-01
5785	FGFR1OP	5.085558e-01
5786	FGFR1OP2	4.991748e-01
5787	FGFR2	8.949166e-01
5788	FGFR3	9.222426e-01
5789	FGFR4	8.736654e-01
5790	FGFRL1	1
5791	FGG	1.427089e-01
5792	FGGY	9.104925e-01
5793	FGL1	2.787331e-01
5794	FGL2	1
5795	FGR	7.588895e-01
5796	FH	7.820895e-01
5797	FHDC1	9.757005e-01
5798	FHIT	3.276368e-01
5799	FHL1	1
5800	FHL2	6.217735e-01
5801	FHL3	3.648365e-01
5802	FHL5	8.603985e-03
5803	FHOD1	8.982188e-01
5804	FHOD3	8.474809e-02
5805	FIBCD1	8.482563e-01
5806	FIBIN	1
5807	FIBP	1
5808	FICD	8.014678e-01
5809	FIG4	6.983215e-01
5810	FIGF	6.204422e-01
5811	FIGLA	1
5812	FIGN	4.234046e-03
5813	FIGNL1	1.837337e-01
5814	FILIP1	1.648987e-02
5815	FILIP1L	4.333819e-01
5816	FIP1L1	9.356764e-02
5817	FIS1	4.424591e-01
5818	FITM1	1
5819	FITM2	1
5820	FIZ1	5.067671e-01
5821	FJX1	1
5822	FKBP10	9.409603e-01
5823	FKBP11	5.167096e-02
5824	FKBP14	2.152428e-01
5825	FKBP15	8.254075e-01
5826	FKBP1A	1
5827	FKBP1B	1
5828	FKBP2	1
5829	FKBP3	2.714388e-01
5830	FKBP4	1
5831	FKBP5	6.757398e-01
5832	FKBP6	7.567697e-01
5833	FKBP7	5.646580e-01
5834	FKBP8	8.417330e-01
5835	FKBP9	3.712226e-01
5836	FKBPL	4.193580e-02
5837	FKRP	7.260635e-01
5838	FKSG83	8.555140e-02
5839	FKTN	4.518964e-01
5840	FLAD1	9.131587e-01
5841	FLCN	9.378994e-01
5842	FLG	1.089715e-05
In gene FLG2 the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 7184    n = 1	mu =   2.96e-07
5843	FLG2	2.504482e-02
5844	FLI1	9.596248e-01
5845	FLII	8.619834e-01
5846	FLJ10357	1
5847	FLJ35220	1
5848	FLJ36031	4.195565e-01
5849	FLJ37543	1
5850	FLJ43860	9.324422e-01
5851	FLJ44635	1.056553e-01
5852	FLJ46321	1
5853	FLNA	9.991661e-01
5854	FLNB	7.648368e-01
5855	FLNC	9.171143e-01
5856	FLOT1	5.465007e-02
5857	FLOT2	1
5858	FLRT1	7.468230e-01
5859	FLRT2	9.604299e-05
5860	FLRT3	2.709094e-01
Done

Running MutSig 2:
Scatter job 65: processing genes 5771 - 5860
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FLG
Processing conservation and coverage...
81% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.324787e-01	ci left: 7.514340e-02	ci right 8.590246e-02	k: 804	n:10000
Cons ci ratio: 6.716099e-02	ci left: 2.454909e-01	ci right 2.626525e-01	k: 2540	n:10000
KS ci ratio: 1.127108e-01	ci left: 1.017865e-01	ci right 1.140430e-01	k: 1078	n:10000
FLG   10000 perm   6 sec   (1791 perm/sec)   p_kst 1.078000e-01   p_cons 2.540000e-01   p_joint 8.040000e-02

Joint ci ratio: 7.666701e-02	ci left: 1.111506e-01	ci right 1.200615e-01	k: 2311	n:20000
Cons ci ratio: 4.783739e-02	ci left: 2.453000e-01	ci right 2.573724e-01	k: 5026	n:20000
KS ci ratio: 8.015886e-02	ci left: 1.025028e-01	ci right 1.111119e-01	k: 2135	n:20000
FLG   20000 perm   17 sec   (1155 perm/sec)   p_kst 1.067500e-01   p_cons 2.513000e-01   p_joint 1.155500e-01

Outputting figure to mutsig2_images.part000000000065/FLG.47_12194_20000_0.10675_0.2513_0.11555.png
                gene_name: FLG
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 2 percent done.
FHOD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.035655e-01	ci left: 1.390981e-02	ci right 1.897755e-02	k: 163	n:10000
Cons ci ratio: 1.238931e+00	ci left: 4.116173e-04	ci right 1.707790e-03	k: 9	n:10000
KS ci ratio: 7.830018e-02	ci left: 1.924939e-01	ci right 2.082810e-01	k: 2003	n:10000
FHOD3   10000 perm   3 sec   (3617 perm/sec)   p_kst 2.003000e-01   p_cons 9.000000e-04   p_joint 1.630000e-02

Joint ci ratio: 3.710268e-01	ci left: 4.522436e-03	ci right 6.625242e-03	k: 110	n:20000
Cons ci ratio: 8.352662e-01	ci left: 6.500803e-04	ci right 1.604591e-03	k: 21	n:20000
KS ci ratio: 5.406288e-02	ci left: 2.024917e-01	ci right 2.137933e-01	k: 4162	n:20000
FHOD3   20000 perm   6 sec   (3308 perm/sec)   p_kst 2.081000e-01   p_cons 1.050000e-03   p_joint 5.500000e-03

Joint ci ratio: 4.894689e-01	ci left: 1.614063e-03	ci right 2.686024e-03	k: 63	n:30000
Cons ci ratio: 6.529304e-01	ci left: 8.127564e-04	ci right 1.622181e-03	k: 35	n:30000
KS ci ratio: 4.434644e-02	ci left: 2.020305e-01	ci right 2.112264e-01	k: 6198	n:30000
FHOD3   30000 perm   9 sec   (3197 perm/sec)   p_kst 2.066000e-01   p_cons 1.166667e-03   p_joint 2.100000e-03

Joint ci ratio: 4.247264e-01	ci left: 1.675377e-03	ci right 2.599293e-03	k: 84	n:40000
Cons ci ratio: 5.540182e-01	ci left: 9.063949e-04	ci right 1.619195e-03	k: 49	n:40000
KS ci ratio: 3.827200e-02	ci left: 2.037831e-01	ci right 2.117594e-01	k: 8310	n:40000
FHOD3   40000 perm   13 sec   (3122 perm/sec)   p_kst 2.077500e-01   p_cons 1.225000e-03   p_joint 2.100000e-03

Joint ci ratio: 1.596080e-01	ci left: 1.096795e-02	ci right 1.288934e-02	k: 595	n:50000
Cons ci ratio: 4.975268e-01	ci left: 9.333279e-04	ci right 1.566869e-03	k: 61	n:50000
KS ci ratio: 3.423727e-02	ci left: 2.041513e-01	ci right 2.112826e-01	k: 10385	n:50000
FHOD3   50000 perm   16 sec   (3065 perm/sec)   p_kst 2.077000e-01   p_cons 1.220000e-03   p_joint 1.190000e-02

Joint ci ratio: 1.580369e-01	ci left: 9.347386e-03	ci right 1.096719e-02	k: 608	n:60000
Cons ci ratio: 4.493662e-01	ci left: 9.833273e-04	ci right 1.566638e-03	k: 75	n:60000
KS ci ratio: 3.130052e-02	ci left: 2.039794e-01	ci right 2.104822e-01	k: 12433	n:60000
FHOD3   60000 perm   20 sec   (3019 perm/sec)   p_kst 2.072167e-01   p_cons 1.250000e-03   p_joint 1.013333e-02

Joint ci ratio: 1.571151e-01	ci left: 8.121413e-03	ci right 9.519759e-03	k: 616	n:70000
Cons ci ratio: 4.300177e-01	ci left: 9.317770e-04	ci right 1.453846e-03	k: 82	n:70000
KS ci ratio: 2.907900e-02	ci left: 2.030943e-01	ci right 2.091015e-01	k: 14426	n:70000
FHOD3   70000 perm   24 sec   (2974 perm/sec)   p_kst 2.060857e-01   p_cons 1.171429e-03   p_joint 8.800000e-03

Joint ci ratio: 2.003477e-01	ci left: 4.285335e-03	ci right 5.251118e-03	k: 380	n:80000
Cons ci ratio: 4.019421e-01	ci left: 9.496208e-04	ci right 1.437713e-03	k: 94	n:80000
KS ci ratio: 2.714391e-02	ci left: 2.039730e-01	ci right 2.095983e-01	k: 16542	n:80000
FHOD3   80000 perm   28 sec   (2905 perm/sec)   p_kst 2.067750e-01   p_cons 1.175000e-03   p_joint 4.750000e-03

Joint ci ratio: 1.978107e-01	ci left: 3.914683e-03	ci right 4.784407e-03	k: 390	n:90000
Cons ci ratio: 3.879157e-01	ci left: 9.141585e-04	ci right 1.363437e-03	k: 101	n:90000
KS ci ratio: 2.560617e-02	ci left: 2.039478e-01	ci right 2.092489e-01	k: 18593	n:90000
FHOD3   90000 perm   32 sec   (2835 perm/sec)   p_kst 2.065889e-01   p_cons 1.122222e-03   p_joint 4.333333e-03

Joint ci ratio: 1.941500e-01	ci left: 3.665808e-03	ci right 4.463381e-03	k: 405	n:100000
Cons ci ratio: 3.701959e-01	ci left: 9.132186e-04	ci right 1.336575e-03	k: 111	n:100000
KS ci ratio: 2.428178e-02	ci left: 2.042236e-01	ci right 2.092534e-01	k: 20673	n:100000
FHOD3   100000 perm   36 sec   (2747 perm/sec)   p_kst 2.067300e-01   p_cons 1.110000e-03   p_joint 4.050000e-03

Joint ci ratio: 1.904554e-01	ci left: 3.470970e-03	ci right 4.210114e-03	k: 421	n:110000
Cons ci ratio: 3.576485e-01	ci left: 8.962758e-04	ci right 1.294419e-03	k: 119	n:110000
KS ci ratio: 2.316873e-02	ci left: 2.041020e-01	ci right 2.088953e-01	k: 22714	n:110000
FHOD3   110000 perm   41 sec   (2663 perm/sec)   p_kst 2.064909e-01   p_cons 1.081818e-03   p_joint 3.827273e-03

Joint ci ratio: 1.411820e-01	ci left: 5.932488e-03	ci right 6.841614e-03	k: 765	n:120000
Cons ci ratio: 3.384459e-01	ci left: 9.280642e-04	ci right 1.313366e-03	k: 133	n:120000
KS ci ratio: 2.218745e-02	ci left: 2.041297e-01	ci right 2.087179e-01	k: 24770	n:120000
FHOD3   120000 perm   47 sec   (2558 perm/sec)   p_kst 2.064167e-01   p_cons 1.108333e-03   p_joint 6.375000e-03

Joint ci ratio: 1.426285e-01	ci left: 5.364742e-03	ci right 6.195998e-03	k: 750	n:130000
Cons ci ratio: 3.253554e-01	ci left: 9.342423e-04	ci right 1.303976e-03	k: 144	n:130000
KS ci ratio: 2.130864e-02	ci left: 2.043482e-01	ci right 2.087572e-01	k: 26851	n:130000
FHOD3   130000 perm   52 sec   (2504 perm/sec)   p_kst 2.065462e-01   p_cons 1.107692e-03   p_joint 5.769231e-03

Joint ci ratio: 1.758785e-01	ci left: 3.224711e-03	ci right 3.853271e-03	k: 494	n:140000
Cons ci ratio: 3.562083e-01	ci left: 7.107061e-04	ci right 1.024847e-03	k: 120	n:140000
KS ci ratio: 2.053152e-02	ci left: 2.044604e-01	ci right 2.087089e-01	k: 28921	n:140000
FHOD3   140000 perm   56 sec   (2483 perm/sec)   p_kst 2.065786e-01   p_cons 8.571429e-04   p_joint 3.528571e-03

Joint ci ratio: 1.732846e-01	ci left: 3.105343e-03	ci right 3.700774e-03	k: 509	n:150000
Cons ci ratio: 3.476953e-01	ci left: 6.997892e-04	ci right 1.000047e-03	k: 126	n:150000
KS ci ratio: 1.984416e-02	ci left: 2.043874e-01	ci right 2.084906e-01	k: 30965	n:150000
FHOD3   150000 perm   61 sec   (2468 perm/sec)   p_kst 2.064333e-01   p_cons 8.400000e-04   p_joint 3.393333e-03

Joint ci ratio: 1.680925e-01	ci left: 3.102716e-03	ci right 3.678011e-03	k: 541	n:160000
Cons ci ratio: 3.323446e-01	ci left: 7.246534e-04	ci right 1.018919e-03	k: 138	n:160000
KS ci ratio: 1.923215e-02	ci left: 2.041451e-01	ci right 2.081156e-01	k: 32980	n:160000
FHOD3   160000 perm   66 sec   (2414 perm/sec)   p_kst 2.061250e-01   p_cons 8.625000e-04   p_joint 3.381250e-03

Joint ci ratio: 1.757557e-01	ci left: 2.661199e-03	ci right 3.179513e-03	k: 495	n:170000
Cons ci ratio: 3.199245e-01	ci left: 7.414382e-04	ci right 1.028964e-03	k: 149	n:170000
KS ci ratio: 1.864162e-02	ci left: 2.044899e-01	ci right 2.083436e-01	k: 35090	n:170000
FHOD3   170000 perm   71 sec   (2388 perm/sec)   p_kst 2.064118e-01   p_cons 8.764706e-04   p_joint 2.911765e-03

Joint ci ratio: 1.711600e-01	ci left: 2.656842e-03	ci right 3.159380e-03	k: 522	n:180000
Cons ci ratio: 3.127127e-01	ci left: 7.360490e-04	ci right 1.013766e-03	k: 156	n:180000
KS ci ratio: 1.810601e-02	ci left: 2.047316e-01	ci right 2.084778e-01	k: 37188	n:180000
FHOD3   180000 perm   76 sec   (2371 perm/sec)   p_kst 2.066000e-01   p_cons 8.666667e-04   p_joint 2.900000e-03

Joint ci ratio: 1.733469e-01	ci left: 2.451514e-03	ci right 2.921758e-03	k: 509	n:190000
Cons ci ratio: 3.023000e-01	ci left: 7.507394e-04	ci right 1.022756e-03	k: 167	n:190000
KS ci ratio: 1.760700e-02	ci left: 2.050804e-01	ci right 2.087285e-01	k: 39311	n:190000
FHOD3   190000 perm   81 sec   (2356 perm/sec)   p_kst 2.069000e-01   p_cons 8.789474e-04   p_joint 2.678947e-03

Joint ci ratio: 1.756170e-01	ci left: 2.266758e-03	ci right 2.707860e-03	k: 496	n:200000
Cons ci ratio: 2.970444e-01	ci left: 7.409467e-04	ci right 1.003867e-03	k: 173	n:200000
KS ci ratio: 1.716957e-02	ci left: 2.049669e-01	ci right 2.085216e-01	k: 41348	n:200000
FHOD3   200000 perm   86 sec   (2339 perm/sec)   p_kst 2.067400e-01   p_cons 8.650000e-04   p_joint 2.480000e-03

Joint ci ratio: 1.728603e-01	ci left: 2.231681e-03	ci right 2.658429e-03	k: 512	n:210000
Cons ci ratio: 2.961999e-01	ci left: 7.100694e-04	ci right 9.611822e-04	k: 174	n:210000
KS ci ratio: 1.676344e-02	ci left: 2.048606e-01	ci right 2.083285e-01	k: 43384	n:210000
FHOD3   210000 perm   90 sec   (2324 perm/sec)   p_kst 2.065905e-01   p_cons 8.285714e-04   p_joint 2.438095e-03

Joint ci ratio: 1.689535e-01	ci left: 2.234666e-03	ci right 2.651343e-03	k: 536	n:220000
Cons ci ratio: 2.857726e-01	ci left: 7.325743e-04	ci right 9.808809e-04	k: 187	n:220000
KS ci ratio: 1.638778e-02	ci left: 2.047059e-01	ci right 2.080928e-01	k: 45407	n:220000
FHOD3   220000 perm   95 sec   (2308 perm/sec)   p_kst 2.063955e-01   p_cons 8.500000e-04   p_joint 2.436364e-03

Joint ci ratio: 1.774436e-01	ci left: 1.929506e-03	ci right 2.309303e-03	k: 486	n:230000
Cons ci ratio: 2.600505e-01	ci left: 8.587190e-04	ci right 1.119338e-03	k: 226	n:230000
KS ci ratio: 1.600506e-02	ci left: 2.052027e-01	ci right 2.085178e-01	k: 47577	n:230000
FHOD3   230000 perm   101 sec   (2285 perm/sec)   p_kst 2.068565e-01   p_cons 9.826087e-04   p_joint 2.113043e-03

Joint ci ratio: 1.781862e-01	ci left: 1.833177e-03	ci right 2.195685e-03	k: 482	n:240000
Cons ci ratio: 2.529078e-01	ci left: 8.736252e-04	ci right 1.130338e-03	k: 239	n:240000
KS ci ratio: 1.566879e-02	ci left: 2.052227e-01	ci right 2.084678e-01	k: 49642	n:240000
FHOD3   240000 perm   106 sec   (2270 perm/sec)   p_kst 2.068417e-01   p_cons 9.958333e-04   p_joint 2.008333e-03

Joint ci ratio: 1.793128e-01	ci left: 1.736916e-03	ci right 2.082795e-03	k: 476	n:250000
Cons ci ratio: 2.482957e-01	ci left: 8.724194e-04	ci right 1.123381e-03	k: 248	n:250000
KS ci ratio: 1.535530e-02	ci left: 2.051899e-01	ci right 2.083689e-01	k: 51694	n:250000
FHOD3   250000 perm   112 sec   (2233 perm/sec)   p_kst 2.067760e-01   p_cons 9.920000e-04   p_joint 1.904000e-03

Joint ci ratio: 1.771014e-01	ci left: 1.714205e-03	ci right 2.050901e-03	k: 488	n:260000
Cons ci ratio: 2.444015e-01	ci left: 8.677345e-04	ci right 1.112839e-03	k: 256	n:260000
KS ci ratio: 1.505072e-02	ci left: 2.053596e-01	ci right 2.084777e-01	k: 53798	n:260000
FHOD3   260000 perm   118 sec   (2207 perm/sec)   p_kst 2.069154e-01   p_cons 9.846154e-04   p_joint 1.876923e-03

Joint ci ratio: 1.747951e-01	ci left: 1.696742e-03	ci right 2.025210e-03	k: 501	n:270000
Cons ci ratio: 2.402318e-01	ci left: 8.669057e-04	ci right 1.106976e-03	k: 265	n:270000
KS ci ratio: 1.477424e-02	ci left: 2.052810e-01	ci right 2.083401e-01	k: 55838	n:270000
FHOD3   270000 perm   124 sec   (2182 perm/sec)   p_kst 2.068074e-01   p_cons 9.814815e-04   p_joint 1.855556e-03

Joint ci ratio: 1.717434e-01	ci left: 1.697642e-03	ci right 2.019951e-03	k: 519	n:280000
Cons ci ratio: 2.366995e-01	ci left: 8.628090e-04	ci right 1.097717e-03	k: 273	n:280000
KS ci ratio: 1.451230e-02	ci left: 2.052121e-01	ci right 2.082154e-01	k: 57879	n:280000
FHOD3   280000 perm   131 sec   (2144 perm/sec)   p_kst 2.067107e-01   p_cons 9.750000e-04   p_joint 1.853571e-03

Joint ci ratio: 1.693197e-01	ci left: 1.688618e-03	ci right 2.004229e-03	k: 534	n:290000
Cons ci ratio: 2.341513e-01	ci left: 8.525257e-04	ci right 1.081774e-03	k: 279	n:290000
KS ci ratio: 1.425527e-02	ci left: 2.053443e-01	ci right 2.082960e-01	k: 59977	n:290000
FHOD3   290000 perm   137 sec   (2110 perm/sec)   p_kst 2.068172e-01   p_cons 9.620690e-04   p_joint 1.841379e-03

Joint ci ratio: 1.680707e-01	ci left: 1.657870e-03	ci right 1.965215e-03	k: 542	n:300000
Cons ci ratio: 2.312792e-01	ci left: 8.460809e-04	ci right 1.070406e-03	k: 286	n:300000
KS ci ratio: 1.400887e-02	ci left: 2.055281e-01	ci right 2.084309e-01	k: 62093	n:300000
FHOD3   300000 perm   143 sec   (2091 perm/sec)   p_kst 2.069767e-01   p_cons 9.533333e-04   p_joint 1.806667e-03

Joint ci ratio: 1.665463e-01	ci left: 1.635296e-03	ci right 1.935431e-03	k: 552	n:310000
Cons ci ratio: 2.289002e-01	ci left: 8.370268e-04	ci right 1.056346e-03	k: 292	n:310000
KS ci ratio: 1.378849e-02	ci left: 2.053754e-01	ci right 2.082301e-01	k: 64108	n:310000
FHOD3   310000 perm   149 sec   (2077 perm/sec)   p_kst 2.068000e-01   p_cons 9.419355e-04   p_joint 1.780645e-03

Joint ci ratio: 1.633281e-01	ci left: 1.650106e-03	ci right 1.946533e-03	k: 574	n:320000
Cons ci ratio: 2.243512e-01	ci left: 8.462415e-04	ci right 1.062960e-03	k: 304	n:320000
KS ci ratio: 1.357431e-02	ci left: 2.053261e-01	ci right 2.081354e-01	k: 66153	n:320000
FHOD3   320000 perm   155 sec   (2063 perm/sec)   p_kst 2.067281e-01   p_cons 9.500000e-04   p_joint 1.793750e-03

Joint ci ratio: 1.463380e-01	ci left: 2.010896e-03	ci right 2.331280e-03	k: 715	n:330000
Cons ci ratio: 2.211128e-01	ci left: 8.463491e-04	ci right 1.059541e-03	k: 313	n:330000
KS ci ratio: 1.336759e-02	ci left: 2.053346e-01	ci right 2.081009e-01	k: 68216	n:330000
FHOD3   330000 perm   161 sec   (2049 perm/sec)   p_kst 2.067152e-01   p_cons 9.484848e-04   p_joint 2.166667e-03

Joint ci ratio: 1.441403e-01	ci left: 2.014107e-03	ci right 2.329768e-03	k: 737	n:340000
Cons ci ratio: 2.176737e-01	ci left: 8.492523e-04	ci right 1.059403e-03	k: 323	n:340000
KS ci ratio: 1.317039e-02	ci left: 2.053340e-01	ci right 2.080592e-01	k: 70276	n:340000
FHOD3   340000 perm   167 sec   (2030 perm/sec)   p_kst 2.066941e-01   p_cons 9.500000e-04   p_joint 2.167647e-03

Joint ci ratio: 1.422263e-01	ci left: 2.011657e-03	ci right 2.322392e-03	k: 757	n:350000
Cons ci ratio: 2.124883e-01	ci left: 8.682410e-04	ci right 1.077306e-03	k: 339	n:350000
KS ci ratio: 1.298438e-02	ci left: 2.052654e-01	ci right 2.079509e-01	k: 72312	n:350000
FHOD3   350000 perm   174 sec   (2011 perm/sec)   p_kst 2.066057e-01   p_cons 9.685714e-04   p_joint 2.162857e-03

Joint ci ratio: 1.399367e-01	ci left: 2.022772e-03	ci right 2.329774e-03	k: 782	n:360000
Cons ci ratio: 2.085379e-01	ci left: 8.783312e-04	ci right 1.085392e-03	k: 352	n:360000
KS ci ratio: 1.281049e-02	ci left: 2.050872e-01	ci right 2.077342e-01	k: 74307	n:360000
FHOD3   360000 perm   180 sec   (1996 perm/sec)   p_kst 2.064083e-01   p_cons 9.777778e-04   p_joint 2.172222e-03

Joint ci ratio: 1.378398e-01	ci left: 2.030714e-03	ci right 2.333924e-03	k: 806	n:370000
Cons ci ratio: 2.065013e-01	ci left: 8.725280e-04	ci right 1.075958e-03	k: 359	n:370000
KS ci ratio: 1.263016e-02	ci left: 2.052614e-01	ci right 2.078730e-01	k: 76429	n:370000
FHOD3   370000 perm   187 sec   (1976 perm/sec)   p_kst 2.065649e-01   p_cons 9.702703e-04   p_joint 2.178378e-03

Joint ci ratio: 1.362457e-01	ci left: 2.025559e-03	ci right 2.324219e-03	k: 825	n:380000
Cons ci ratio: 2.048027e-01	ci left: 8.645428e-04	ci right 1.064246e-03	k: 365	n:380000
KS ci ratio: 1.246363e-02	ci left: 2.052585e-01	ci right 2.078354e-01	k: 78487	n:380000
FHOD3   380000 perm   194 sec   (1959 perm/sec)   p_kst 2.065447e-01   p_cons 9.605263e-04   p_joint 2.171053e-03

Joint ci ratio: 1.220405e-01	ci left: 2.477402e-03	ci right 2.801853e-03	k: 1028	n:390000
Cons ci ratio: 2.026009e-01	ci left: 8.618414e-04	ci right 1.058515e-03	k: 373	n:390000
KS ci ratio: 1.230314e-02	ci left: 2.052663e-01	ci right 2.078099e-01	k: 80549	n:390000
FHOD3   390000 perm   200 sec   (1945 perm/sec)   p_kst 2.065359e-01   p_cons 9.564103e-04   p_joint 2.635897e-03

Joint ci ratio: 1.224029e-01	ci left: 2.400920e-03	ci right 2.716355e-03	k: 1022	n:400000
Cons ci ratio: 2.004686e-01	ci left: 8.592860e-04	ci right 1.053060e-03	k: 381	n:400000
KS ci ratio: 1.215129e-02	ci left: 2.052040e-01	ci right 2.077152e-01	k: 82583	n:400000
FHOD3   400000 perm   207 sec   (1931 perm/sec)   p_kst 2.064575e-01   p_cons 9.525000e-04   p_joint 2.555000e-03

Joint ci ratio: 1.233164e-01	ci left: 2.306893e-03	ci right 2.612402e-03	k: 1007	n:410000
Cons ci ratio: 1.981481e-01	ci left: 8.591836e-04	ci right 1.050421e-03	k: 390	n:410000
KS ci ratio: 1.199974e-02	ci left: 2.052861e-01	ci right 2.077668e-01	k: 84675	n:410000
FHOD3   410000 perm   214 sec   (1916 perm/sec)   p_kst 2.065244e-01   p_cons 9.512195e-04   p_joint 2.456098e-03

Joint ci ratio: 1.226510e-01	ci left: 2.277349e-03	ci right 2.577200e-03	k: 1018	n:420000
Cons ci ratio: 1.956618e-01	ci left: 8.613627e-04	ci right 1.050393e-03	k: 400	n:420000
KS ci ratio: 1.186449e-02	ci left: 2.050676e-01	ci right 2.075174e-01	k: 86642	n:420000
FHOD3   420000 perm   221 sec   (1904 perm/sec)   p_kst 2.062905e-01   p_cons 9.523810e-04   p_joint 2.423810e-03

Joint ci ratio: 1.252050e-01	ci left: 2.131984e-03	ci right 2.418974e-03	k: 977	n:430000
Cons ci ratio: 1.930318e-01	ci left: 8.656679e-04	ci right 1.052789e-03	k: 411	n:430000
KS ci ratio: 1.172972e-02	ci left: 2.049707e-01	ci right 2.073914e-01	k: 88657	n:430000
FHOD3   430000 perm   227 sec   (1891 perm/sec)   p_kst 2.061791e-01   p_cons 9.558140e-04   p_joint 2.272093e-03

Joint ci ratio: 1.240692e-01	ci left: 2.123163e-03	ci right 2.406182e-03	k: 995	n:440000
Cons ci ratio: 1.905051e-01	ci left: 8.697936e-04	ci right 1.055061e-03	k: 422	n:440000
KS ci ratio: 1.160072e-02	ci left: 2.048421e-01	ci right 2.072345e-01	k: 90656	n:440000
FHOD3   440000 perm   234 sec   (1878 perm/sec)   p_kst 2.060364e-01   p_cons 9.590909e-04   p_joint 2.261364e-03

Joint ci ratio: 1.238854e-01	ci left: 2.082439e-03	ci right 2.359588e-03	k: 998	n:450000
Cons ci ratio: 1.885103e-01	ci left: 8.695160e-04	ci right 1.052563e-03	k: 431	n:450000
KS ci ratio: 1.147011e-02	ci left: 2.048835e-01	ci right 2.072492e-01	k: 92729	n:450000
FHOD3   450000 perm   242 sec   (1861 perm/sec)   p_kst 2.060644e-01   p_cons 9.577778e-04   p_joint 2.217778e-03

Joint ci ratio: 1.160584e-01	ci left: 2.330300e-03	ci right 2.619502e-03	k: 1137	n:460000
Cons ci ratio: 1.865770e-01	ci left: 8.692601e-04	ci right 1.050164e-03	k: 440	n:460000
KS ci ratio: 1.134021e-02	ci left: 2.050273e-01	ci right 2.073677e-01	k: 94850	n:460000
FHOD3   460000 perm   250 sec   (1836 perm/sec)   p_kst 2.061957e-01   p_cons 9.565217e-04   p_joint 2.471739e-03

Joint ci ratio: 1.154026e-01	ci left: 2.307577e-03	ci right 2.592229e-03	k: 1150	n:470000
Cons ci ratio: 1.842924e-01	ci left: 8.730833e-04	ci right 1.052309e-03	k: 451	n:470000
KS ci ratio: 1.122089e-02	ci left: 2.049825e-01	ci right 2.072977e-01	k: 96885	n:470000
FHOD3   470000 perm   258 sec   (1821 perm/sec)   p_kst 2.061383e-01   p_cons 9.595745e-04   p_joint 2.446809e-03

Joint ci ratio: 1.137338e-01	ci left: 2.328307e-03	ci right 2.611085e-03	k: 1184	n:480000
Cons ci ratio: 1.826832e-01	ci left: 8.707951e-04	ci right 1.047818e-03	k: 459	n:480000
KS ci ratio: 1.110582e-02	ci left: 2.049231e-01	ci right 2.072137e-01	k: 98912	n:480000
FHOD3   480000 perm   265 sec   (1809 perm/sec)   p_kst 2.060667e-01   p_cons 9.562500e-04   p_joint 2.466667e-03

Joint ci ratio: 1.134969e-01	ci left: 2.290702e-03	ci right 2.568295e-03	k: 1189	n:490000
Cons ci ratio: 1.805371e-01	ci left: 8.744524e-04	ci right 1.049902e-03	k: 470	n:490000
KS ci ratio: 1.099518e-02	ci left: 2.048378e-01	ci right 2.071045e-01	k: 100925	n:490000
FHOD3   490000 perm   273 sec   (1797 perm/sec)   p_kst 2.059694e-01   p_cons 9.591837e-04   p_joint 2.426531e-03

Joint ci ratio: 1.130719e-01	ci left: 2.262376e-03	ci right 2.535441e-03	k: 1198	n:500000
Cons ci ratio: 1.790234e-01	ci left: 8.722432e-04	ci right 1.045623e-03	k: 478	n:500000
KS ci ratio: 1.088479e-02	ci left: 2.048458e-01	ci right 2.070896e-01	k: 102983	n:500000
FHOD3   500000 perm   280 sec   (1785 perm/sec)   p_kst 2.059660e-01   p_cons 9.560000e-04   p_joint 2.396000e-03

Joint ci ratio: 1.013023e-01	ci left: 2.779113e-03	ci right 3.077558e-03	k: 1492	n:510000
Cons ci ratio: 1.773650e-01	ci left: 8.720003e-04	ci right 1.043554e-03	k: 487	n:510000
KS ci ratio: 1.078115e-02	ci left: 2.047479e-01	ci right 2.069692e-01	k: 104987	n:510000
FHOD3   510000 perm   289 sec   (1768 perm/sec)   p_kst 2.058569e-01   p_cons 9.549020e-04   p_joint 2.925490e-03

Joint ci ratio: 1.027650e-01	ci left: 2.646951e-03	ci right 2.935556e-03	k: 1450	n:520000
Cons ci ratio: 1.768234e-01	ci left: 8.607442e-04	ci right 1.029511e-03	k: 490	n:520000
KS ci ratio: 1.067745e-02	ci left: 2.047441e-01	ci right 2.069438e-01	k: 107038	n:520000
FHOD3   520000 perm   297 sec   (1753 perm/sec)   p_kst 2.058423e-01   p_cons 9.423077e-04   p_joint 2.788462e-03

Joint ci ratio: 1.016498e-01	ci left: 2.655843e-03	ci right 2.942087e-03	k: 1482	n:530000
Cons ci ratio: 1.750497e-01	ci left: 8.625408e-04	ci right 1.029784e-03	k: 500	n:530000
KS ci ratio: 1.057438e-02	ci left: 2.048120e-01	ci right 2.069912e-01	k: 109127	n:530000
FHOD3   530000 perm   304 sec   (1742 perm/sec)   p_kst 2.059000e-01   p_cons 9.433962e-04   p_joint 2.796226e-03

Joint ci ratio: 1.006702e-01	ci left: 2.659006e-03	ci right 2.942666e-03	k: 1511	n:540000
Cons ci ratio: 1.733284e-01	ci left: 8.642791e-04	ci right 1.030039e-03	k: 510	n:540000
KS ci ratio: 1.047216e-02	ci left: 2.049423e-01	ci right 2.071016e-01	k: 111251	n:540000
FHOD3   540000 perm   312 sec   (1729 perm/sec)   p_kst 2.060204e-01   p_cons 9.444444e-04   p_joint 2.798148e-03

Joint ci ratio: 9.975081e-02	ci left: 2.660294e-03	ci right 2.941348e-03	k: 1539	n:550000
Cons ci ratio: 1.724873e-01	ci left: 8.572621e-04	ci right 1.020796e-03	k: 515	n:550000
KS ci ratio: 1.037976e-02	ci left: 2.048501e-01	ci right 2.069893e-01	k: 113255	n:550000
FHOD3   550000 perm   320 sec   (1719 perm/sec)   p_kst 2.059182e-01   p_cons 9.363636e-04   p_joint 2.798182e-03

Joint ci ratio: 1.010782e-01	ci left: 2.543146e-03	ci right 2.815611e-03	k: 1499	n:560000
Cons ci ratio: 1.710025e-01	ci left: 8.573345e-04	ci right 1.019329e-03	k: 524	n:560000
KS ci ratio: 1.028359e-02	ci left: 2.049574e-01	ci right 2.070778e-01	k: 115369	n:560000
FHOD3   560000 perm   328 sec   (1707 perm/sec)   p_kst 2.060161e-01   p_cons 9.357143e-04   p_joint 2.676786e-03

Joint ci ratio: 1.001806e-01	ci left: 2.544706e-03	ci right 2.814774e-03	k: 1526	n:570000
Cons ci ratio: 1.698741e-01	ci left: 8.540502e-04	ci right 1.014250e-03	k: 531	n:570000
KS ci ratio: 1.019103e-02	ci left: 2.050295e-01	ci right 2.071314e-01	k: 117465	n:570000
FHOD3   570000 perm   337 sec   (1691 perm/sec)   p_kst 2.060789e-01   p_cons 9.315789e-04   p_joint 2.677193e-03

Joint ci ratio: 1.004471e-01	ci left: 2.487381e-03	ci right 2.752109e-03	k: 1518	n:580000
Cons ci ratio: 1.692398e-01	ci left: 8.459288e-04	ci right 1.003952e-03	k: 535	n:580000
KS ci ratio: 1.010049e-02	ci left: 2.051129e-01	ci right 2.071969e-01	k: 119569	n:580000
FHOD3   580000 perm   345 sec   (1680 perm/sec)   p_kst 2.061534e-01   p_cons 9.224138e-04   p_joint 2.617241e-03

Joint ci ratio: 9.963067e-02	ci left: 2.486535e-03	ci right 2.748896e-03	k: 1543	n:590000
Cons ci ratio: 1.673762e-01	ci left: 8.510735e-04	ci right 1.008131e-03	k: 547	n:590000
KS ci ratio: 1.001399e-02	ci left: 2.051395e-01	ci right 2.072058e-01	k: 121641	n:590000
FHOD3   590000 perm   354 sec   (1668 perm/sec)   p_kst 2.061712e-01   p_cons 9.271186e-04   p_joint 2.615254e-03

Joint ci ratio: 9.889705e-02	ci left: 2.482474e-03	ci right 2.742366e-03	k: 1566	n:600000
Cons ci ratio: 1.655728e-01	ci left: 8.560559e-04	ci right 1.012161e-03	k: 559	n:600000
KS ci ratio: 9.935385e-03	ci left: 2.049773e-01	ci right 2.070256e-01	k: 123600	n:600000
FHOD3   600000 perm   362 sec   (1656 perm/sec)   p_kst 2.060000e-01   p_cons 9.316667e-04   p_joint 2.610000e-03

Joint ci ratio: 9.796344e-02	ci left: 2.489748e-03	ci right 2.747799e-03	k: 1596	n:610000
Cons ci ratio: 1.645479e-01	ci left: 8.530234e-04	ci right 1.007517e-03	k: 566	n:610000
KS ci ratio: 9.853019e-03	ci left: 2.050053e-01	ci right 2.070368e-01	k: 125672	n:610000
FHOD3   610000 perm   371 sec   (1645 perm/sec)   p_kst 2.060197e-01   p_cons 9.278689e-04   p_joint 2.616393e-03

Joint ci ratio: 9.843005e-02	ci left: 2.425987e-03	ci right 2.678697e-03	k: 1581	n:620000
Cons ci ratio: 1.633993e-01	ci left: 8.516387e-04	ci right 1.004699e-03	k: 574	n:620000
KS ci ratio: 9.772428e-03	ci left: 2.050406e-01	ci right 2.070557e-01	k: 127749	n:620000
FHOD3   620000 perm   380 sec   (1632 perm/sec)   p_kst 2.060468e-01   p_cons 9.258065e-04   p_joint 2.550000e-03

Joint ci ratio: 9.781413e-02	ci left: 2.418446e-03	ci right 2.668703e-03	k: 1601	n:630000
Cons ci ratio: 1.614451e-01	ci left: 8.594399e-04	ci right 1.011876e-03	k: 588	n:630000
KS ci ratio: 9.695428e-03	ci left: 2.050193e-01	ci right 2.070183e-01	k: 129791	n:630000
FHOD3   630000 perm   390 sec   (1616 perm/sec)   p_kst 2.060175e-01   p_cons 9.333333e-04   p_joint 2.541270e-03

Joint ci ratio: 9.682141e-02	ci left: 2.430966e-03	ci right 2.679821e-03	k: 1634	n:640000
Cons ci ratio: 1.596920e-01	ci left: 8.655077e-04	ci right 1.017193e-03	k: 601	n:640000
KS ci ratio: 9.615627e-03	ci left: 2.051548e-01	ci right 2.071385e-01	k: 131933	n:640000
FHOD3   640000 perm   399 sec   (1605 perm/sec)   p_kst 2.061453e-01   p_cons 9.390625e-04   p_joint 2.553125e-03

Joint ci ratio: 9.646905e-02	ci left: 2.411581e-03	ci right 2.657502e-03	k: 1646	n:650000
Cons ci ratio: 1.583819e-01	ci left: 8.669645e-04	ci right 1.017540e-03	k: 611	n:650000
KS ci ratio: 9.541575e-03	ci left: 2.051556e-01	ci right 2.071240e-01	k: 133990	n:650000
FHOD3   650000 perm   408 sec   (1593 perm/sec)   p_kst 2.061385e-01   p_cons 9.400000e-04   p_joint 2.532308e-03

Joint ci ratio: 9.586018e-02	ci left: 2.406094e-03	ci right 2.649820e-03	k: 1667	n:660000
Cons ci ratio: 1.571035e-01	ci left: 8.683822e-04	ci right 1.017872e-03	k: 621	n:660000
KS ci ratio: 9.468637e-03	ci left: 2.051761e-01	ci right 2.071295e-01	k: 136060	n:660000
FHOD3   660000 perm   417 sec   (1582 perm/sec)   p_kst 2.061515e-01   p_cons 9.409091e-04   p_joint 2.525758e-03

Joint ci ratio: 8.968503e-02	ci left: 2.715734e-03	ci right 2.972176e-03	k: 1904	n:670000
Cons ci ratio: 1.554866e-01	ci left: 8.740656e-04	ci right 1.022841e-03	k: 634	n:670000
KS ci ratio: 9.396919e-03	ci left: 2.052109e-01	ci right 2.071498e-01	k: 138140	n:670000
FHOD3   670000 perm   427 sec   (1570 perm/sec)   p_kst 2.061791e-01   p_cons 9.462687e-04   p_joint 2.841791e-03

Joint ci ratio: 9.018677e-02	ci left: 2.645605e-03	ci right 2.896896e-03	k: 1883	n:680000
Cons ci ratio: 1.547576e-01	ci left: 8.696926e-04	ci right 1.016965e-03	k: 640	n:680000
KS ci ratio: 9.327266e-03	ci left: 2.052286e-01	ci right 2.071533e-01	k: 140209	n:680000
FHOD3   680000 perm   436 sec   (1561 perm/sec)   p_kst 2.061897e-01   p_cons 9.411765e-04   p_joint 2.769118e-03

Joint ci ratio: 8.954744e-02	ci left: 2.645514e-03	ci right 2.894922e-03	k: 1910	n:690000
Cons ci ratio: 1.530942e-01	ci left: 8.765970e-04	ci right 1.023297e-03	k: 654	n:690000
KS ci ratio: 9.258198e-03	ci left: 2.052792e-01	ci right 2.071900e-01	k: 142301	n:690000
FHOD3   690000 perm   445 sec   (1549 perm/sec)   p_kst 2.062333e-01   p_cons 9.478261e-04   p_joint 2.768116e-03

Joint ci ratio: 8.413657e-02	ci left: 2.961327e-03	ci right 3.222812e-03	k: 2163	n:700000
Cons ci ratio: 1.517106e-01	ci left: 8.805634e-04	ci right 1.026474e-03	k: 666	n:700000
KS ci ratio: 9.272705e-03	ci left: 2.024376e-01	ci right 2.043249e-01	k: 142366	n:700000
FHOD3   700000 perm   456 sec   (1537 perm/sec)   p_kst 2.033800e-01   p_cons 9.514286e-04   p_joint 3.090000e-03

Joint ci ratio: 8.404108e-02	ci left: 2.926510e-03	ci right 3.184613e-03	k: 2168	n:710000
Cons ci ratio: 1.504747e-01	ci left: 8.830684e-04	ci right 1.028095e-03	k: 677	n:710000
KS ci ratio: 9.208647e-03	ci left: 2.023925e-01	ci right 2.042663e-01	k: 144363	n:710000
FHOD3   710000 perm   465 sec   (1526 perm/sec)   p_kst 2.033282e-01   p_cons 9.535211e-04   p_joint 3.053521e-03

Joint ci ratio: 7.696167e-02	ci left: 3.452067e-03	ci right 3.729728e-03	k: 2584	n:720000
Cons ci ratio: 1.491602e-01	ci left: 8.868456e-04	ci right 1.031107e-03	k: 689	n:720000
KS ci ratio: 9.143153e-03	ci left: 2.024458e-01	ci right 2.043066e-01	k: 146430	n:720000
FHOD3   720000 perm   476 sec   (1513 perm/sec)   p_kst 2.033750e-01   p_cons 9.569444e-04   p_joint 3.588889e-03

Joint ci ratio: 7.648989e-02	ci left: 3.447773e-03	ci right 3.723313e-03	k: 2616	n:730000
Cons ci ratio: 1.478796e-01	ci left: 8.905246e-04	ci right 1.034031e-03	k: 701	n:730000
KS ci ratio: 9.080496e-03	ci left: 2.024457e-01	ci right 2.042937e-01	k: 148459	n:730000
FHOD3   730000 perm   486 sec   (1502 perm/sec)   p_kst 2.033685e-01   p_cons 9.602740e-04   p_joint 3.583562e-03

Joint ci ratio: 7.674230e-02	ci left: 3.378644e-03	ci right 3.649590e-03	k: 2599	n:740000
Cons ci ratio: 1.469407e-01	ci left: 8.902041e-04	ci right 1.032668e-03	k: 710	n:740000
KS ci ratio: 9.017041e-03	ci left: 2.025198e-01	ci right 2.043555e-01	k: 150543	n:740000
FHOD3   740000 perm   496 sec   (1493 perm/sec)   p_kst 2.034365e-01   p_cons 9.594595e-04   p_joint 3.512162e-03

Joint ci ratio: 7.684798e-02	ci left: 3.324438e-03	ci right 3.591420e-03	k: 2592	n:750000
Cons ci ratio: 1.459181e-01	ci left: 8.911796e-04	ci right 1.032720e-03	k: 720	n:750000
KS ci ratio: 8.957476e-03	ci left: 2.024988e-01	ci right 2.043221e-01	k: 152557	n:750000
FHOD3   750000 perm   506 sec   (1482 perm/sec)   p_kst 2.034093e-01   p_cons 9.600000e-04   p_joint 3.456000e-03

Joint ci ratio: 7.679033e-02	ci left: 3.285855e-03	ci right 3.549532e-03	k: 2596	n:760000
Cons ci ratio: 1.451154e-01	ci left: 8.895965e-04	ci right 1.030041e-03	k: 728	n:760000
KS ci ratio: 8.897524e-03	ci left: 2.025349e-01	ci right 2.043463e-01	k: 154614	n:760000
FHOD3   760000 perm   517 sec   (1471 perm/sec)   p_kst 2.034395e-01   p_cons 9.578947e-04   p_joint 3.415789e-03

Joint ci ratio: 7.633623e-02	ci left: 3.282670e-03	ci right 3.544465e-03	k: 2627	n:770000
Cons ci ratio: 1.444240e-01	ci left: 8.868049e-04	ci right 1.026084e-03	k: 735	n:770000
KS ci ratio: 8.839892e-03	ci left: 2.025286e-01	ci right 2.043282e-01	k: 156639	n:770000
FHOD3   770000 perm   526 sec   (1463 perm/sec)   p_kst 2.034273e-01   p_cons 9.545455e-04   p_joint 3.411688e-03

Joint ci ratio: 7.661631e-02	ci left: 3.216687e-03	ci right 3.474203e-03	k: 2608	n:780000
Cons ci ratio: 1.431648e-01	ci left: 8.915028e-04	ci right 1.030195e-03	k: 748	n:780000
KS ci ratio: 8.781038e-03	ci left: 2.026083e-01	ci right 2.043965e-01	k: 158731	n:780000
FHOD3   780000 perm   537 sec   (1452 perm/sec)   p_kst 2.035013e-01   p_cons 9.589744e-04   p_joint 3.343590e-03

Joint ci ratio: 7.375160e-02	ci left: 3.431842e-03	ci right 3.695870e-03	k: 2814	n:790000
Cons ci ratio: 1.423124e-01	ci left: 8.912035e-04	ci right 1.028954e-03	k: 757	n:790000
KS ci ratio: 8.726342e-03	ci left: 2.025748e-01	ci right 2.043515e-01	k: 160735	n:790000
FHOD3   790000 perm   549 sec   (1438 perm/sec)   p_kst 2.034620e-01   p_cons 9.582278e-04   p_joint 3.562025e-03

Joint ci ratio: 7.354380e-02	ci left: 3.408574e-03	ci right 3.670041e-03	k: 2830	n:800000
Cons ci ratio: 1.409244e-01	ci left: 8.981493e-04	ci right 1.035505e-03	k: 772	n:800000
KS ci ratio: 8.671686e-03	ci left: 2.025783e-01	ci right 2.043439e-01	k: 162768	n:800000
FHOD3   800000 perm   560 sec   (1428 perm/sec)   p_kst 2.034600e-01   p_cons 9.650000e-04   p_joint 3.537500e-03

Joint ci ratio: 7.405908e-02	ci left: 3.319228e-03	ci right 3.575702e-03	k: 2791	n:810000
Cons ci ratio: 1.401111e-01	ci left: 8.977815e-04	ci right 1.034223e-03	k: 781	n:810000
KS ci ratio: 8.617486e-03	ci left: 2.026027e-01	ci right 2.043574e-01	k: 164818	n:810000
FHOD3   810000 perm   571 sec   (1418 perm/sec)   p_kst 2.034790e-01   p_cons 9.641975e-04   p_joint 3.445679e-03

Joint ci ratio: 7.361225e-02	ci left: 3.319447e-03	ci right 3.574324e-03	k: 2825	n:820000
Cons ci ratio: 1.390481e-01	ci left: 9.009562e-04	ci right 1.036755e-03	k: 793	n:820000
KS ci ratio: 8.563806e-03	ci left: 2.026449e-01	ci right 2.043889e-01	k: 166883	n:820000
FHOD3   820000 perm   582 sec   (1410 perm/sec)   p_kst 2.035159e-01   p_cons 9.670732e-04   p_joint 3.445122e-03

Joint ci ratio: 7.319909e-02	ci left: 3.317300e-03	ci right 3.570522e-03	k: 2857	n:830000
Cons ci ratio: 1.380947e-01	ci left: 9.028949e-04	ci right 1.037976e-03	k: 804	n:830000
KS ci ratio: 8.513490e-03	ci left: 2.025958e-01	ci right 2.043292e-01	k: 168873	n:830000
FHOD3   830000 perm   593 sec   (1400 perm/sec)   p_kst 2.034614e-01   p_cons 9.686747e-04   p_joint 3.442169e-03

Joint ci ratio: 7.298312e-02	ci left: 3.297676e-03	ci right 3.548625e-03	k: 2874	n:840000
Cons ci ratio: 1.371607e-01	ci left: 9.047906e-04	ci right 1.039165e-03	k: 815	n:840000
KS ci ratio: 8.461750e-03	ci left: 2.026359e-01	ci right 2.043590e-01	k: 170937	n:840000
FHOD3   840000 perm   603 sec   (1392 perm/sec)   p_kst 2.034964e-01   p_cons 9.702381e-04   p_joint 3.421429e-03

Joint ci ratio: 7.016324e-02	ci left: 3.530418e-03	ci right 3.788277e-03	k: 3109	n:850000
Cons ci ratio: 1.360807e-01	ci left: 9.089175e-04	ci right 1.042756e-03	k: 828	n:850000
KS ci ratio: 8.411186e-03	ci left: 2.026657e-01	ci right 2.043787e-01	k: 172993	n:850000
FHOD3   850000 perm   614 sec   (1384 perm/sec)   p_kst 2.035212e-01   p_cons 9.741176e-04   p_joint 3.657647e-03

Joint ci ratio: 6.967182e-02	ci left: 3.539636e-03	ci right 3.796283e-03	k: 3153	n:860000
Cons ci ratio: 1.351062e-01	ci left: 9.118289e-04	ci right 1.045057e-03	k: 840	n:860000
KS ci ratio: 8.362537e-03	ci left: 2.026553e-01	ci right 2.043583e-01	k: 175015	n:860000
FHOD3   860000 perm   626 sec   (1375 perm/sec)   p_kst 2.035058e-01   p_cons 9.767442e-04   p_joint 3.666279e-03

Joint ci ratio: 7.007581e-02	ci left: 3.458289e-03	ci right 3.710551e-03	k: 3117	n:870000
Cons ci ratio: 1.339952e-01	ci left: 9.168986e-04	ci right 1.049678e-03	k: 854	n:870000
KS ci ratio: 8.314487e-03	ci left: 2.026544e-01	ci right 2.043475e-01	k: 177045	n:870000
FHOD3   870000 perm   637 sec   (1367 perm/sec)   p_kst 2.035000e-01   p_cons 9.816092e-04   p_joint 3.582759e-03

Joint ci ratio: 6.991989e-02	ci left: 3.434619e-03	ci right 3.684575e-03	k: 3131	n:880000
Cons ci ratio: 1.335278e-01	ci left: 9.130692e-04	ci right 1.044797e-03	k: 860	n:880000
KS ci ratio: 8.267836e-03	ci left: 2.026309e-01	ci right 2.043143e-01	k: 179055	n:880000
FHOD3   880000 perm   648 sec   (1359 perm/sec)   p_kst 2.034716e-01   p_cons 9.772727e-04   p_joint 3.557955e-03

Joint ci ratio: 6.951046e-02	ci left: 3.436876e-03	ci right 3.685473e-03	k: 3168	n:890000
Cons ci ratio: 1.328354e-01	ci left: 9.125854e-04	ci right 1.043506e-03	k: 869	n:890000
KS ci ratio: 8.223700e-03	ci left: 2.025394e-01	ci right 2.042130e-01	k: 181004	n:890000
FHOD3   890000 perm   659 sec   (1351 perm/sec)   p_kst 2.033753e-01   p_cons 9.764045e-04   p_joint 3.559551e-03

Joint ci ratio: 6.981091e-02	ci left: 3.369207e-03	ci right 3.614005e-03	k: 3141	n:900000
Cons ci ratio: 1.317790e-01	ci left: 9.174864e-04	ci right 1.047982e-03	k: 883	n:900000
KS ci ratio: 8.177177e-03	ci left: 2.025721e-01	ci right 2.042365e-01	k: 183063	n:900000
FHOD3   900000 perm   671 sec   (1342 perm/sec)   p_kst 2.034033e-01   p_cons 9.811111e-04   p_joint 3.490000e-03

Joint ci ratio: 6.782637e-02	ci left: 3.533072e-03	ci right 3.782192e-03	k: 3327	n:910000
Cons ci ratio: 1.306747e-01	ci left: 9.233467e-04	ci right 1.053490e-03	k: 898	n:910000
KS ci ratio: 8.130664e-03	ci left: 2.026348e-01	ci right 2.042902e-01	k: 185150	n:910000
FHOD3   910000 perm   682 sec   (1334 perm/sec)   p_kst 2.034615e-01   p_cons 9.868132e-04   p_joint 3.656044e-03

Joint ci ratio: 6.741223e-02	ci left: 3.538481e-03	ci right 3.786399e-03	k: 3368	n:920000
Cons ci ratio: 1.296686e-01	ci left: 9.280323e-04	ci right 1.057751e-03	k: 912	n:920000
KS ci ratio: 8.087267e-03	ci left: 2.026028e-01	ci right 2.042490e-01	k: 187151	n:920000
FHOD3   920000 perm   693 sec   (1328 perm/sec)   p_kst 2.034250e-01   p_cons 9.913043e-04   p_joint 3.660870e-03

Joint ci ratio: 6.774738e-02	ci left: 3.465544e-03	ci right 3.709607e-03	k: 3335	n:930000
Cons ci ratio: 1.288944e-01	ci left: 9.294989e-04	ci right 1.058588e-03	k: 923	n:930000
KS ci ratio: 8.044450e-03	ci left: 2.025759e-01	ci right 2.042131e-01	k: 189156	n:930000
FHOD3   930000 perm   704 sec   (1321 perm/sec)   p_kst 2.033935e-01   p_cons 9.924731e-04   p_joint 3.586022e-03

Joint ci ratio: 6.744501e-02	ci left: 3.460052e-03	ci right 3.702597e-03	k: 3365	n:940000
Cons ci ratio: 1.281339e-01	ci left: 9.309366e-04	ci right 1.059404e-03	k: 934	n:940000
KS ci ratio: 8.000625e-03	ci left: 2.026175e-01	ci right 2.042461e-01	k: 191225	n:940000
FHOD3   940000 perm   716 sec   (1313 perm/sec)   p_kst 2.034309e-01   p_cons 9.936170e-04   p_joint 3.579787e-03

Joint ci ratio: 6.710700e-02	ci left: 3.458818e-03	ci right 3.700014e-03	k: 3399	n:950000
Cons ci ratio: 1.273867e-01	ci left: 9.323462e-04	ci right 1.060201e-03	k: 945	n:950000
KS ci ratio: 7.960068e-03	ci left: 2.025542e-01	ci right 2.041740e-01	k: 193195	n:950000
FHOD3   950000 perm   727 sec   (1306 perm/sec)   p_kst 2.033632e-01   p_cons 9.947368e-04   p_joint 3.577895e-03

Joint ci ratio: 6.595031e-02	ci left: 3.545714e-03	ci right 3.788546e-03	k: 3519	n:960000
Cons ci ratio: 1.265201e-01	ci left: 9.357460e-04	ci right 1.063129e-03	k: 958	n:960000
KS ci ratio: 7.919256e-03	ci left: 2.025276e-01	ci right 2.041388e-01	k: 195199	n:960000
FHOD3   960000 perm   739 sec   (1299 perm/sec)   p_kst 2.033323e-01   p_cons 9.979167e-04   p_joint 3.665625e-03

Joint ci ratio: 6.554170e-02	ci left: 3.553776e-03	ci right 3.795595e-03	k: 3563	n:970000
Cons ci ratio: 1.259306e-01	ci left: 9.350845e-04	ci right 1.061740e-03	k: 967	n:970000
KS ci ratio: 7.878613e-03	ci left: 2.025201e-01	ci right 2.041229e-01	k: 197221	n:970000
FHOD3   970000 perm   752 sec   (1290 perm/sec)   p_kst 2.033206e-01   p_cons 9.969072e-04   p_joint 3.673196e-03

Joint ci ratio: 5.846494e-02	ci left: 4.432794e-03	ci right 4.700759e-03	k: 4474	n:980000
Cons ci ratio: 1.246489e-01	ci left: 9.453117e-04	ci right 1.071953e-03	k: 987	n:980000
KS ci ratio: 7.838788e-03	ci left: 2.025046e-01	ci right 2.040992e-01	k: 199235	n:980000
FHOD3   980000 perm   764 sec   (1283 perm/sec)   p_kst 2.033010e-01   p_cons 1.007143e-03   p_joint 4.565306e-03

Joint ci ratio: 5.816673e-02	ci left: 4.433806e-03	ci right 4.700419e-03	k: 4520	n:990000
Cons ci ratio: 1.238986e-01	ci left: 9.475075e-04	ci right 1.073623e-03	k: 999	n:990000
KS ci ratio: 7.800168e-03	ci left: 2.024642e-01	ci right 2.040506e-01	k: 201224	n:990000
FHOD3   990000 perm   776 sec   (1276 perm/sec)   p_kst 2.032566e-01   p_cons 1.009091e-03   p_joint 4.565657e-03

Joint ci ratio: 5.844139e-02	ci left: 4.348074e-03	ci right 4.610809e-03	k: 4478	n:1000000
Cons ci ratio: 1.234061e-01	ci left: 9.457849e-04	ci right 1.071134e-03	k: 1007	n:1000000
KS ci ratio: 7.760101e-03	ci left: 2.025086e-01	ci right 2.040871e-01	k: 203297	n:1000000
FHOD3   1000000 perm   788 sec   (1269 perm/sec)   p_kst 2.032970e-01   p_cons 1.007000e-03   p_joint 4.478000e-03

Joint ci ratio: 5.833160e-02	ci left: 4.321608e-03	ci right 4.582236e-03	k: 4495	n:1010000
Cons ci ratio: 1.223780e-01	ci left: 9.527352e-04	ci right 1.077878e-03	k: 1024	n:1010000
KS ci ratio: 7.720479e-03	ci left: 2.025590e-01	ci right 2.041299e-01	k: 205377	n:1010000
FHOD3   1010000 perm   800 sec   (1263 perm/sec)   p_kst 2.033436e-01   p_cons 1.013861e-03   p_joint 4.450495e-03

Joint ci ratio: 5.835244e-02	ci left: 4.276338e-03	ci right 4.534331e-03	k: 4492	n:1020000
Cons ci ratio: 1.218443e-01	ci left: 9.519487e-04	ci right 1.076403e-03	k: 1033	n:1020000
KS ci ratio: 7.684062e-03	ci left: 2.024988e-01	ci right 2.040617e-01	k: 207345	n:1020000
FHOD3   1020000 perm   812 sec   (1256 perm/sec)   p_kst 2.032794e-01   p_cons 1.012745e-03   p_joint 4.403922e-03

Joint ci ratio: 5.815254e-02	ci left: 4.264479e-03	ci right 4.520845e-03	k: 4523	n:1030000
Cons ci ratio: 1.215511e-01	ci left: 9.474129e-04	ci right 1.070955e-03	k: 1038	n:1030000
KS ci ratio: 7.647789e-03	ci left: 2.024553e-01	ci right 2.040105e-01	k: 209329	n:1030000
FHOD3   1030000 perm   825 sec   (1249 perm/sec)   p_kst 2.032320e-01   p_cons 1.007767e-03   p_joint 4.391262e-03

Joint ci ratio: 5.803792e-02	ci left: 4.240529e-03	ci right 4.494936e-03	k: 4541	n:1040000
Cons ci ratio: 1.207401e-01	ci left: 9.513569e-04	ci right 1.074526e-03	k: 1052	n:1040000
KS ci ratio: 7.609471e-03	ci left: 2.025211e-01	ci right 2.040690e-01	k: 211426	n:1040000
FHOD3   1040000 perm   839 sec   (1240 perm/sec)   p_kst 2.032942e-01   p_cons 1.011538e-03   p_joint 4.366346e-03

Joint ci ratio: 6.104815e-02	ci left: 3.791994e-03	ci right 4.031708e-03	k: 4106	n:1050000
Cons ci ratio: 1.205118e-01	ci left: 9.459908e-04	ci right 1.068217e-03	k: 1056	n:1050000
KS ci ratio: 7.572969e-03	ci left: 2.025325e-01	ci right 2.040730e-01	k: 213467	n:1050000
FHOD3   1050000 perm   851 sec   (1234 perm/sec)   p_kst 2.033019e-01   p_cons 1.005714e-03   p_joint 3.910476e-03

Joint ci ratio: 6.104928e-02	ci left: 3.756218e-03	ci right 3.993675e-03	k: 4106	n:1060000
Cons ci ratio: 1.201149e-01	ci left: 9.434713e-04	ci right 1.064942e-03	k: 1063	n:1060000
KS ci ratio: 7.537559e-03	ci left: 2.025191e-01	ci right 2.040523e-01	k: 215482	n:1060000
FHOD3   1060000 perm   863 sec   (1228 perm/sec)   p_kst 2.032849e-01   p_cons 1.002830e-03   p_joint 3.873585e-03

Joint ci ratio: 6.090171e-02	ci left: 3.739519e-03	ci right 3.975329e-03	k: 4126	n:1070000
Cons ci ratio: 1.197219e-01	ci left: 9.409995e-04	ci right 1.061728e-03	k: 1070	n:1070000
KS ci ratio: 7.501818e-03	ci left: 2.025415e-01	ci right 2.040676e-01	k: 217535	n:1070000
FHOD3   1070000 perm   875 sec   (1222 perm/sec)   p_kst 2.033037e-01   p_cons 1.000000e-03   p_joint 3.856075e-03

Joint ci ratio: 6.076991e-02	ci left: 3.721306e-03	ci right 3.955441e-03	k: 4144	n:1080000
Cons ci ratio: 1.192221e-01	ci left: 9.403709e-04	ci right 1.060479e-03	k: 1079	n:1080000
KS ci ratio: 7.465983e-03	ci left: 2.025894e-01	ci right 2.041085e-01	k: 219616	n:1080000
FHOD3   1080000 perm   888 sec   (1216 perm/sec)   p_kst 2.033481e-01   p_cons 9.990741e-04   p_joint 3.837037e-03

Joint ci ratio: 6.161988e-02	ci left: 3.585074e-03	ci right 3.813906e-03	k: 4031	n:1090000
Cons ci ratio: 1.186739e-01	ci left: 9.406450e-04	ci right 1.060197e-03	k: 1089	n:1090000
KS ci ratio: 7.431436e-03	ci left: 2.026025e-01	ci right 2.041147e-01	k: 221660	n:1090000
FHOD3   1090000 perm   901 sec   (1210 perm/sec)   p_kst 2.033578e-01   p_cons 9.990826e-04   p_joint 3.698165e-03

Joint ci ratio: 6.127865e-02	ci left: 3.592764e-03	ci right 3.820771e-03	k: 4076	n:1100000
Cons ci ratio: 1.178654e-01	ci left: 9.453267e-04	ci right 1.064599e-03	k: 1104	n:1100000
KS ci ratio: 7.397405e-03	ci left: 2.026136e-01	ci right 2.041189e-01	k: 223702	n:1100000
FHOD3   1100000 perm   913 sec   (1204 perm/sec)   p_kst 2.033655e-01   p_cons 1.003636e-03   p_joint 3.705455e-03

Joint ci ratio: 5.622887e-02	ci left: 4.236854e-03	ci right 4.482861e-03	k: 4838	n:1110000
Cons ci ratio: 1.174412e-01	ci left: 9.438053e-04	ci right 1.062427e-03	k: 1112	n:1110000
KS ci ratio: 7.362097e-03	ci left: 2.027010e-01	ci right 2.041997e-01	k: 225829	n:1110000
FHOD3   1110000 perm   927 sec   (1197 perm/sec)   p_kst 2.034495e-01   p_cons 1.001802e-03   p_joint 4.358559e-03

Joint ci ratio: 5.595194e-02	ci left: 4.241281e-03	ci right 4.486293e-03	k: 4886	n:1120000
Cons ci ratio: 1.168131e-01	ci left: 9.457789e-04	ci right 1.063969e-03	k: 1124	n:1120000
KS ci ratio: 7.329430e-03	ci left: 2.026923e-01	ci right 2.041842e-01	k: 227850	n:1120000
FHOD3   1120000 perm   941 sec   (1190 perm/sec)   p_kst 2.034375e-01   p_cons 1.003571e-03   p_joint 4.362500e-03

Joint ci ratio: 5.789469e-02	ci left: 3.923700e-03	ci right 4.158499e-03	k: 4565	n:1130000
Cons ci ratio: 1.161438e-01	ci left: 9.485785e-04	ci right 1.066393e-03	k: 1137	n:1130000
KS ci ratio: 7.297432e-03	ci left: 2.026732e-01	ci right 2.041584e-01	k: 229859	n:1130000
FHOD3   1130000 perm   955 sec   (1184 perm/sec)   p_kst 2.034150e-01   p_cons 1.006195e-03   p_joint 4.039823e-03

Joint ci ratio: 5.770569e-02	ci left: 3.915217e-03	ci right 4.148718e-03	k: 4595	n:1140000
Cons ci ratio: 1.157884e-01	ci left: 9.462198e-04	ci right 1.063357e-03	k: 1144	n:1140000
KS ci ratio: 7.264749e-03	ci left: 2.027035e-01	ci right 2.041823e-01	k: 231924	n:1140000
FHOD3   1140000 perm   967 sec   (1178 perm/sec)   p_kst 2.034421e-01   p_cons 1.003509e-03   p_joint 4.030702e-03

Joint ci ratio: 5.775088e-02	ci left: 3.875170e-03	ci right 4.106469e-03	k: 4588	n:1150000
Cons ci ratio: 1.151364e-01	ci left: 9.489698e-04	ci right 1.065741e-03	k: 1157	n:1150000
KS ci ratio: 7.234015e-03	ci left: 2.026655e-01	ci right 2.041377e-01	k: 233911	n:1150000
FHOD3   1150000 perm   980 sec   (1173 perm/sec)   p_kst 2.034009e-01   p_cons 1.006087e-03   p_joint 3.989565e-03

Joint ci ratio: 5.572192e-02	ci left: 4.129875e-03	ci right 4.367438e-03	k: 4927	n:1160000
Cons ci ratio: 1.147902e-01	ci left: 9.466499e-04	ci right 1.062761e-03	k: 1164	n:1160000
KS ci ratio: 7.201694e-03	ci left: 2.027169e-01	ci right 2.041829e-01	k: 236001	n:1160000
FHOD3   1160000 perm   994 sec   (1167 perm/sec)   p_kst 2.034491e-01   p_cons 1.003448e-03   p_joint 4.247414e-03

Joint ci ratio: 5.549159e-02	ci left: 4.129132e-03	ci right 4.365640e-03	k: 4968	n:1170000
Cons ci ratio: 1.142034e-01	ci left: 9.485216e-04	ci right 1.064228e-03	k: 1176	n:1170000
KS ci ratio: 7.170804e-03	ci left: 2.027221e-01	ci right 2.041819e-01	k: 238038	n:1170000
FHOD3   1170000 perm   1007 sec   (1162 perm/sec)   p_kst 2.034513e-01   p_cons 1.005128e-03   p_joint 4.246154e-03

Joint ci ratio: 5.563331e-02	ci left: 4.073244e-03	ci right 4.307166e-03	k: 4943	n:1180000
Cons ci ratio: 1.136734e-01	ci left: 9.495397e-04	ci right 1.064797e-03	k: 1187	n:1180000
KS ci ratio: 7.141802e-03	ci left: 2.026596e-01	ci right 2.041130e-01	k: 239995	n:1180000
FHOD3   1180000 perm   1020 sec   (1156 perm/sec)   p_kst 2.033856e-01   p_cons 1.005932e-03   p_joint 4.188983e-03

Joint ci ratio: 5.483263e-02	ci left: 4.159186e-03	ci right 4.394497e-03	k: 5088	n:1190000
Cons ci ratio: 1.131507e-01	ci left: 9.505419e-04	ci right 1.065354e-03	k: 1198	n:1190000
KS ci ratio: 7.110881e-03	ci left: 2.027014e-01	ci right 2.041488e-01	k: 242075	n:1190000
FHOD3   1190000 perm   1035 sec   (1149 perm/sec)   p_kst 2.034244e-01   p_cons 1.006723e-03   p_joint 4.275630e-03

Joint ci ratio: 5.472034e-02	ci left: 4.141786e-03	ci right 4.375617e-03	k: 5109	n:1200000
Cons ci ratio: 1.124030e-01	ci left: 9.555781e-04	ci right 1.070186e-03	k: 1214	n:1200000
KS ci ratio: 7.081741e-03	ci left: 2.026793e-01	ci right 2.041205e-01	k: 244079	n:1200000
FHOD3   1200000 perm   1050 sec   (1143 perm/sec)   p_kst 2.033992e-01   p_cons 1.011667e-03   p_joint 4.257500e-03

Joint ci ratio: 5.229937e-02	ci left: 4.500597e-03	ci right 4.743106e-03	k: 5591	n:1210000
Cons ci ratio: 1.119432e-01	ci left: 9.557133e-04	ci right 1.069837e-03	k: 1224	n:1210000
KS ci ratio: 7.051931e-03	ci left: 2.027045e-01	ci right 2.041399e-01	k: 246140	n:1210000
FHOD3   1210000 perm   1063 sec   (1138 perm/sec)   p_kst 2.034215e-01   p_cons 1.011570e-03   p_joint 4.620661e-03

Joint ci ratio: 5.226751e-02	ci left: 4.469368e-03	ci right 4.710042e-03	k: 5598	n:1220000
Cons ci ratio: 1.115343e-01	ci left: 9.550505e-04	ci right 1.068651e-03	k: 1233	n:1220000
KS ci ratio: 7.023880e-03	ci left: 2.026656e-01	ci right 2.040949e-01	k: 248123	n:1220000
FHOD3   1220000 perm   1077 sec   (1133 perm/sec)   p_kst 2.033795e-01   p_cons 1.010656e-03   p_joint 4.588525e-03

Joint ci ratio: 5.201710e-02	ci left: 4.476362e-03	ci right 4.716224e-03	k: 5652	n:1230000
Cons ci ratio: 1.112643e-01	ci left: 9.520279e-04	ci right 1.064977e-03	k: 1239	n:1230000
KS ci ratio: 6.995600e-03	ci left: 2.026532e-01	ci right 2.040766e-01	k: 250138	n:1230000
FHOD3   1230000 perm   1091 sec   (1127 perm/sec)   p_kst 2.033642e-01   p_cons 1.007317e-03   p_joint 4.595122e-03

Joint ci ratio: 5.253402e-02	ci left: 4.352705e-03	ci right 4.588328e-03	k: 5542	n:1240000
Cons ci ratio: 1.108628e-01	ci left: 9.514067e-04	ci right 1.063848e-03	k: 1248	n:1240000
KS ci ratio: 6.966999e-03	ci left: 2.026717e-01	ci right 2.040894e-01	k: 252191	n:1240000
FHOD3   1240000 perm   1106 sec   (1122 perm/sec)   p_kst 2.033798e-01   p_cons 1.006452e-03   p_joint 4.469355e-03

Joint ci ratio: 5.042628e-02	ci left: 4.689855e-03	ci right 4.933248e-03	k: 6013	n:1250000
Cons ci ratio: 1.102465e-01	ci left: 9.546858e-04	ci right 1.066847e-03	k: 1262	n:1250000
KS ci ratio: 6.939072e-03	ci left: 2.026747e-01	ci right 2.040867e-01	k: 254225	n:1250000
FHOD3   1250000 perm   1120 sec   (1116 perm/sec)   p_kst 2.033800e-01   p_cons 1.009600e-03   p_joint 4.810400e-03

Joint ci ratio: 5.085382e-02	ci left: 4.574267e-03	ci right 4.813733e-03	k: 5913	n:1260000
Cons ci ratio: 1.098991e-01	ci left: 9.532833e-04	ci right 1.064904e-03	k: 1270	n:1260000
KS ci ratio: 6.911935e-03	ci left: 2.026562e-01	ci right 2.040626e-01	k: 256232	n:1260000
FHOD3   1260000 perm   1134 sec   (1111 perm/sec)   p_kst 2.033587e-01   p_cons 1.007937e-03   p_joint 4.692857e-03

Joint ci ratio: 5.076000e-02	ci left: 4.555351e-03	ci right 4.793373e-03	k: 5935	n:1270000
Cons ci ratio: 1.097268e-01	ci left: 9.488401e-04	ci right 1.059755e-03	k: 1274	n:1270000
KS ci ratio: 6.885683e-03	ci left: 2.026114e-01	ci right 2.040121e-01	k: 258205	n:1270000
FHOD3   1270000 perm   1149 sec   (1105 perm/sec)   p_kst 2.033110e-01   p_cons 1.003150e-03   p_joint 4.673228e-03

Joint ci ratio: 5.757407e-02	ci left: 3.504679e-03	ci right 3.713202e-03	k: 4618	n:1280000
Cons ci ratio: 1.092990e-01	ci left: 9.490258e-04	ci right 1.059502e-03	k: 1284	n:1280000
KS ci ratio: 7.208870e-03	ci left: 1.869810e-01	ci right 1.883345e-01	k: 240201	n:1280000
FHOD3   1280000 perm   1164 sec   (1100 perm/sec)   p_kst 1.876570e-01   p_cons 1.003125e-03   p_joint 3.607812e-03

Joint ci ratio: 5.736338e-02	ci left: 3.503488e-03	ci right 3.711153e-03	k: 4652	n:1290000
Cons ci ratio: 1.088341e-01	ci left: 9.499636e-04	ci right 1.060049e-03	k: 1295	n:1290000
KS ci ratio: 7.180337e-03	ci left: 1.870064e-01	ci right 1.883547e-01	k: 242107	n:1290000
FHOD3   1290000 perm   1179 sec   (1094 perm/sec)   p_kst 1.876798e-01   p_cons 1.003876e-03   p_joint 3.606202e-03

Joint ci ratio: 5.724699e-02	ci left: 3.490944e-03	ci right 3.697431e-03	k: 4671	n:1300000
Cons ci ratio: 1.084167e-01	ci left: 9.501395e-04	ci right 1.059796e-03	k: 1305	n:1300000
KS ci ratio: 7.152447e-03	ci left: 1.870183e-01	ci right 1.883615e-01	k: 243996	n:1300000
FHOD3   1300000 perm   1194 sec   (1089 perm/sec)   p_kst 1.876892e-01   p_cons 1.003846e-03   p_joint 3.593077e-03

Joint ci ratio: 5.705203e-02	ci left: 3.488374e-03	ci right 3.693983e-03	k: 4703	n:1310000
Cons ci ratio: 1.080040e-01	ci left: 9.503135e-04	ci right 1.059546e-03	k: 1315	n:1310000
KS ci ratio: 7.124665e-03	ci left: 1.870393e-01	ci right 1.883774e-01	k: 245897	n:1310000
FHOD3   1310000 perm   1208 sec   (1084 perm/sec)   p_kst 1.877076e-01   p_cons 1.003817e-03   p_joint 3.590076e-03

Joint ci ratio: 5.697992e-02	ci left: 3.470907e-03	ci right 3.675220e-03	k: 4715	n:1320000
Cons ci ratio: 1.076773e-01	ci left: 9.490112e-04	ci right 1.057743e-03	k: 1323	n:1320000
KS ci ratio: 7.098139e-03	ci left: 1.870198e-01	ci right 1.883528e-01	k: 247745	n:1320000
FHOD3   1320000 perm   1222 sec   (1080 perm/sec)   p_kst 1.876856e-01   p_cons 1.002273e-03   p_joint 3.571970e-03

Joint ci ratio: 5.677566e-02	ci left: 3.470010e-03	ci right 3.673514e-03	k: 4749	n:1330000
Cons ci ratio: 1.072729e-01	ci left: 9.491925e-04	ci right 1.057511e-03	k: 1333	n:1330000
KS ci ratio: 7.072466e-03	ci left: 1.869766e-01	ci right 1.883044e-01	k: 249561	n:1330000
FHOD3   1330000 perm   1237 sec   (1075 perm/sec)   p_kst 1.876398e-01   p_cons 1.002256e-03   p_joint 3.570677e-03

Joint ci ratio: 5.733017e-02	ci left: 3.377168e-03	ci right 3.577226e-03	k: 4658	n:1340000
Cons ci ratio: 1.070326e-01	ci left: 9.464665e-04	ci right 1.054216e-03	k: 1339	n:1340000
KS ci ratio: 7.045689e-03	ci left: 1.869937e-01	ci right 1.883166e-01	k: 251457	n:1340000
FHOD3   1340000 perm   1251 sec   (1071 perm/sec)   p_kst 1.876545e-01   p_cons 9.992537e-04   p_joint 3.476119e-03

Joint ci ratio: 5.793293e-02	ci left: 3.282061e-03	ci right 3.478597e-03	k: 4562	n:1350000
Cons ci ratio: 1.066355e-01	ci left: 9.466651e-04	ci right 1.054013e-03	k: 1349	n:1350000
KS ci ratio: 7.020748e-03	ci left: 1.869440e-01	ci right 1.882618e-01	k: 253263	n:1350000
FHOD3   1350000 perm   1266 sec   (1066 perm/sec)   p_kst 1.876022e-01   p_cons 9.992593e-04   p_joint 3.379259e-03

Joint ci ratio: 5.770569e-02	ci left: 3.284017e-03	ci right 3.479872e-03	k: 4598	n:1360000
Cons ci ratio: 1.061646e-01	ci left: 9.482931e-04	ci right 1.055321e-03	k: 1361	n:1360000
KS ci ratio: 6.994873e-03	ci left: 1.869471e-01	ci right 1.882601e-01	k: 255140	n:1360000
FHOD3   1360000 perm   1280 sec   (1062 perm/sec)   p_kst 1.876029e-01   p_cons 1.000735e-03   p_joint 3.380882e-03

Joint ci ratio: 5.763729e-02	ci left: 3.267958e-03	ci right 3.462618e-03	k: 4609	n:1370000
Cons ci ratio: 1.060482e-01	ci left: 9.435028e-04	ci right 1.049866e-03	k: 1364	n:1370000
KS ci ratio: 6.970300e-03	ci left: 1.869058e-01	ci right 1.882138e-01	k: 256956	n:1370000
FHOD3   1370000 perm   1296 sec   (1057 perm/sec)   p_kst 1.875591e-01   p_cons 9.956204e-04   p_joint 3.364234e-03

Joint ci ratio: 5.745073e-02	ci left: 3.265704e-03	ci right 3.459578e-03	k: 4639	n:1380000
Cons ci ratio: 1.058160e-01	ci left: 9.408984e-04	ci right 1.046721e-03	k: 1370	n:1380000
KS ci ratio: 6.944398e-03	ci left: 1.869345e-01	ci right 1.882378e-01	k: 258868	n:1380000
FHOD3   1380000 perm   1311 sec   (1052 perm/sec)   p_kst 1.875855e-01   p_cons 9.927536e-04   p_joint 3.361594e-03

Joint ci ratio: 5.719843e-02	ci left: 3.271283e-03	ci right 3.464608e-03	k: 4680	n:1390000
Cons ci ratio: 1.054704e-01	ci left: 9.404331e-04	ci right 1.045837e-03	k: 1379	n:1390000
KS ci ratio: 6.919175e-03	ci left: 1.869455e-01	ci right 1.882442e-01	k: 260756	n:1390000
FHOD3   1390000 perm   1326 sec   (1048 perm/sec)   p_kst 1.875942e-01   p_cons 9.920863e-04   p_joint 3.366906e-03

Joint ci ratio: 5.556155e-02	ci left: 3.444402e-03	ci right 3.641946e-03	k: 4959	n:1400000
Cons ci ratio: 1.050525e-01	ci left: 9.413660e-04	ci right 1.046430e-03	k: 1390	n:1400000
KS ci ratio: 6.893288e-03	ci left: 1.869978e-01	ci right 1.882920e-01	k: 262702	n:1400000
FHOD3   1400000 perm   1342 sec   (1044 perm/sec)   p_kst 1.876443e-01   p_cons 9.928571e-04   p_joint 3.542143e-03

Joint ci ratio: 5.533877e-02	ci left: 3.447950e-03	ci right 3.644879e-03	k: 4999	n:1410000
Cons ci ratio: 1.047893e-01	ci left: 9.395239e-04	ci right 1.044104e-03	k: 1397	n:1410000
KS ci ratio: 6.868328e-03	ci left: 1.870211e-01	ci right 1.883107e-01	k: 264608	n:1410000
FHOD3   1410000 perm   1357 sec   (1039 perm/sec)   p_kst 1.876652e-01   p_cons 9.907801e-04   p_joint 3.545390e-03

Joint ci ratio: 5.658523e-02	ci left: 3.272981e-03	ci right 3.464265e-03	k: 4782	n:1420000
Cons ci ratio: 1.045653e-01	ci left: 9.370222e-04	ci right 1.041087e-03	k: 1403	n:1420000
KS ci ratio: 6.844411e-03	ci left: 1.870095e-01	ci right 1.882946e-01	k: 266465	n:1420000
FHOD3   1420000 perm   1374 sec   (1034 perm/sec)   p_kst 1.876514e-01   p_cons 9.880282e-04   p_joint 3.367606e-03

Joint ci ratio: 5.635583e-02	ci left: 3.276981e-03	ci right 3.467697e-03	k: 4821	n:1430000
Cons ci ratio: 1.041949e-01	ci left: 9.372800e-04	ci right 1.040982e-03	k: 1413	n:1430000
KS ci ratio: 6.821056e-03	ci left: 1.869842e-01	ci right 1.882646e-01	k: 268302	n:1430000
FHOD3   1430000 perm   1389 sec   (1029 perm/sec)   p_kst 1.876238e-01   p_cons 9.881119e-04   p_joint 3.371329e-03

Joint ci ratio: 5.632720e-02	ci left: 3.257646e-03	ci right 3.447138e-03	k: 4826	n:1440000
Cons ci ratio: 1.038284e-01	ci left: 9.375350e-04	ci right 1.040878e-03	k: 1423	n:1440000
KS ci ratio: 6.797040e-03	ci left: 1.869994e-01	ci right 1.882755e-01	k: 270197	n:1440000
FHOD3   1440000 perm   1406 sec   (1024 perm/sec)   p_kst 1.876368e-01   p_cons 9.881944e-04   p_joint 3.351389e-03

Joint ci ratio: 5.616464e-02	ci left: 3.254219e-03	ci right 3.442946e-03	k: 4854	n:1450000
Cons ci ratio: 1.034296e-01	ci left: 9.384588e-04	ci right 1.041482e-03	k: 1434	n:1450000
KS ci ratio: 6.773001e-03	ci left: 1.870268e-01	ci right 1.882985e-01	k: 272110	n:1450000
FHOD3   1450000 perm   1423 sec   (1019 perm/sec)   p_kst 1.876621e-01   p_cons 9.889655e-04   p_joint 3.347586e-03

Joint ci ratio: 5.408136e-02	ci left: 3.488628e-03	ci right 3.683212e-03	k: 5234	n:1460000
Cons ci ratio: 1.029998e-01	ci left: 9.400381e-04	ci right 1.042780e-03	k: 1446	n:1460000
KS ci ratio: 6.749169e-03	ci left: 1.870560e-01	ci right 1.883234e-01	k: 274026	n:1460000
FHOD3   1460000 perm   1440 sec   (1014 perm/sec)   p_kst 1.876890e-01   p_cons 9.904110e-04   p_joint 3.584932e-03

Joint ci ratio: 5.465068e-02	ci left: 3.392421e-03	ci right 3.583693e-03	k: 5126	n:1470000
Cons ci ratio: 1.026457e-01	ci left: 9.402710e-04	ci right 1.042664e-03	k: 1456	n:1470000
KS ci ratio: 6.726217e-03	ci left: 1.870561e-01	ci right 1.883192e-01	k: 275900	n:1470000
FHOD3   1470000 perm   1458 sec   (1008 perm/sec)   p_kst 1.876871e-01   p_cons 9.904762e-04   p_joint 3.487075e-03

Joint ci ratio: 5.474248e-02	ci left: 3.358168e-03	ci right 3.547837e-03	k: 5109	n:1480000
Cons ci ratio: 1.021907e-01	ci left: 9.424767e-04	ci right 1.044627e-03	k: 1469	n:1480000
KS ci ratio: 6.704047e-03	ci left: 1.870314e-01	ci right 1.882901e-01	k: 277737	n:1480000
FHOD3   1480000 perm   1474 sec   (1004 perm/sec)   p_kst 1.876601e-01   p_cons 9.925676e-04   p_joint 3.452027e-03

Joint ci ratio: 5.469480e-02	ci left: 3.341587e-03	ci right 3.530150e-03	k: 5118	n:1490000
Cons ci ratio: 1.018449e-01	ci left: 9.426915e-04	ci right 1.044499e-03	k: 1479	n:1490000
KS ci ratio: 6.681786e-03	ci left: 1.870210e-01	ci right 1.882755e-01	k: 279595	n:1490000
FHOD3   1490000 perm   1490 sec   (1000 perm/sec)   p_kst 1.876477e-01   p_cons 9.926174e-04   p_joint 3.434899e-03

Joint ci ratio: 5.477063e-02	ci left: 3.310103e-03	ci right 3.497156e-03	k: 5104	n:1500000
Cons ci ratio: 1.014685e-01	ci left: 9.435538e-04	ci right 1.045055e-03	k: 1490	n:1500000
KS ci ratio: 6.659774e-03	ci left: 1.870095e-01	ci right 1.882597e-01	k: 281451	n:1500000
FHOD3   1500000 perm   1508 sec   (995 perm/sec)   p_kst 1.876340e-01   p_cons 9.933333e-04   p_joint 3.402667e-03

Joint ci ratio: 5.260275e-02	ci left: 3.567834e-03	ci right 3.761230e-03	k: 5532	n:1510000
Cons ci ratio: 1.009282e-01	ci left: 9.476331e-04	ci right 1.048999e-03	k: 1506	n:1510000
KS ci ratio: 6.638181e-03	ci left: 1.869888e-01	ci right 1.882349e-01	k: 283293	n:1510000
FHOD3   1510000 perm   1527 sec   (989 perm/sec)   p_kst 1.876113e-01   p_cons 9.973510e-04   p_joint 3.663576e-03

Joint ci ratio: 5.068113e-02	ci left: 3.821019e-03	ci right 4.020352e-03	k: 5958	n:1520000
Cons ci ratio: 1.006947e-01	ci left: 9.458877e-04	ci right 1.046819e-03	k: 1513	n:1520000
KS ci ratio: 6.616082e-03	ci left: 1.870013e-01	ci right 1.882433e-01	k: 285185	n:1520000
FHOD3   1520000 perm   1543 sec   (985 perm/sec)   p_kst 1.876217e-01   p_cons 9.953947e-04   p_joint 3.919737e-03

Joint ci ratio: 5.051609e-02	ci left: 3.821213e-03	ci right 4.019888e-03	k: 5997	n:1530000
Cons ci ratio: 1.003638e-01	ci left: 9.460771e-04	ci right 1.046677e-03	k: 1523	n:1530000
KS ci ratio: 6.594923e-03	ci left: 1.869804e-01	ci right 1.882182e-01	k: 287026	n:1530000
FHOD3   1530000 perm   1561 sec   (980 perm/sec)   p_kst 1.875987e-01   p_cons 9.954248e-04   p_joint 3.919608e-03

Joint ci ratio: 5.084112e-02	ci left: 3.747671e-03	ci right 3.943813e-03	k: 5921	n:1540000
Cons ci ratio: 9.993835e-02	ci left: 9.481639e-04	ci right 1.048533e-03	k: 1536	n:1540000
KS ci ratio: 6.574541e-03	ci left: 1.869331e-01	ci right 1.881668e-01	k: 288826	n:1540000
FHOD3   1540000 perm   1578 sec   (976 perm/sec)   p_kst 1.875494e-01   p_cons 9.974026e-04   p_joint 3.844805e-03

Outputting figure to mutsig2_images.part000000000065/FHOD3.19_4420_1540000_0.18755_0.0009974_0.0038448.png
                gene_name: FHOD3
               theta_stop: 0.100 
                    nperm: 1540000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.00100 
      ci_cons_bounds_left: 0.00095 
     ci_cons_bounds_right: 0.0010 
                  p_joint: 0.0038 
     ci_joint_bounds_left: 0.0037 
    ci_joint_bounds_right: 0.0039 

Current progress: 4 percent done.
FLG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.596939e-02	ci left: 3.197920e-01	ci right 3.383077e-01	k: 3290	n:10000
Cons ci ratio: 6.390416e-02	ci left: 2.645824e-01	ci right 2.821498e-01	k: 2733	n:10000
KS ci ratio: 5.598207e-02	ci left: 3.196927e-01	ci right 3.382070e-01	k: 3289	n:10000
FLG2   10000 perm   4 sec   (2806 perm/sec)   p_kst 3.289000e-01   p_cons 2.733000e-01   p_joint 3.290000e-01

Outputting figure to mutsig2_images.part000000000065/FLG2.18_7184_10000_0.3289_0.2733_0.329.png
                gene_name: FLG2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 6 percent done.
FLNB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.204041e-02	ci left: 7.513020e-01	ci right 7.681465e-01	k: 7598	n:10000
KS ci ratio: 1.403660e-02	ci left: 8.800177e-01	ci right 8.925563e-01	k: 8864	n:10000
FLNB   10000 perm   4 sec   (2752 perm/sec)   p_kst 8.864000e-01   p_cons 7.598000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FLNB.16_8090_10000_0.8864_0.7598_1.png
                gene_name: FLNB
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
FLRT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.870566e-02	ci left: 6.414642e-01	ci right 6.602478e-01	k: 6509	n:10000
Cons ci ratio: 2.089762e-02	ci left: 7.704332e-01	ci right 7.868042e-01	k: 7787	n:10000
KS ci ratio: 5.022109e-02	ci left: 3.689804e-01	ci right 3.880904e-01	k: 3785	n:10000
FLRT2   10000 perm   2 sec   (4621 perm/sec)   p_kst 3.785000e-01   p_cons 7.787000e-01   p_joint 6.509000e-01

Outputting figure to mutsig2_images.part000000000065/FLRT2.16_1987_10000_0.3785_0.7787_0.6509.png
                gene_name: FLRT2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 10 percent done.
FLNC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.167540e-01	ci left: 9.535564e-02	ci right 1.072778e-01	k: 1012	n:10000
Cons ci ratio: 4.090057e-02	ci left: 4.688665e-01	ci right 4.885459e-01	k: 4787	n:10000
KS ci ratio: 1.481806e-01	ci left: 6.053496e-02	ci right 7.032006e-02	k: 653	n:10000
FLNC   10000 perm   4 sec   (2636 perm/sec)   p_kst 6.530000e-02   p_cons 4.787000e-01   p_joint 1.012000e-01

Joint ci ratio: 8.635687e-02	ci left: 8.935242e-02	ci right 9.746624e-02	k: 1867	n:20000
Cons ci ratio: 2.861800e-02	ci left: 4.770518e-01	ci right 4.909529e-01	k: 9680	n:20000
KS ci ratio: 1.042709e-01	ci left: 6.254854e-02	ci right 6.947828e-02	k: 1319	n:20000
FLNC   20000 perm   8 sec   (2528 perm/sec)   p_kst 6.595000e-02   p_cons 4.840000e-01   p_joint 9.335000e-02

Joint ci ratio: 6.308307e-02	ci left: 1.104245e-01	ci right 1.176504e-01	k: 3420	n:30000
Cons ci ratio: 2.338115e-02	ci left: 4.780302e-01	ci right 4.893729e-01	k: 14511	n:30000
KS ci ratio: 8.557791e-02	ci left: 6.256256e-02	ci right 6.818863e-02	k: 1960	n:30000
FLNC   30000 perm   12 sec   (2496 perm/sec)   p_kst 6.533333e-02   p_cons 4.837000e-01   p_joint 1.140000e-01

Outputting figure to mutsig2_images.part000000000065/FLNC.13_8370_30000_0.065333_0.4837_0.114.png
                gene_name: FLNC
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 12 percent done.
FILIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.353182e-02	ci left: 1.423679e-01	ci right 1.564370e-01	k: 1493	n:10000
Cons ci ratio: 8.958253e-02	ci left: 1.534534e-01	ci right 1.679449e-01	k: 1606	n:10000
KS ci ratio: 1.099875e-01	ci left: 1.064680e-01	ci right 1.189587e-01	k: 1126	n:10000
FILIP1   10000 perm   2 sec   (4092 perm/sec)   p_kst 1.126000e-01   p_cons 1.606000e-01   p_joint 1.493000e-01

Joint ci ratio: 6.615107e-02	ci left: 1.443871e-01	ci right 1.543151e-01	k: 2986	n:20000
Cons ci ratio: 6.377143e-02	ci left: 1.538089e-01	ci right 1.639905e-01	k: 3177	n:20000
KS ci ratio: 8.235578e-02	ci left: 9.754417e-02	ci right 1.059720e-01	k: 2034	n:20000
FILIP1   20000 perm   6 sec   (3548 perm/sec)   p_kst 1.017000e-01   p_cons 1.588500e-01   p_joint 1.493000e-01

Outputting figure to mutsig2_images.part000000000065/FILIP1.11_3662_20000_0.1017_0.15885_0.1493.png
                gene_name: FILIP1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 15 percent done.
FIGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.214176e-02	ci left: 4.539876e-01	ci right 4.736335e-01	k: 4638	n:10000
Cons ci ratio: 8.252124e-02	ci left: 1.764483e-01	ci right 1.917362e-01	k: 1840	n:10000
KS ci ratio: 3.687980e-02	ci left: 5.205606e-01	ci right 5.402216e-01	k: 5304	n:10000
FIGN   10000 perm   2 sec   (4305 perm/sec)   p_kst 5.304000e-01   p_cons 1.840000e-01   p_joint 4.638000e-01

Outputting figure to mutsig2_images.part000000000065/FIGN.10_2288_10000_0.5304_0.184_0.4638.png
                gene_name: FIGN
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 17 percent done.
FILIP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.416833e-02	ci left: 5.584231e-01	ci right 5.779372e-01	k: 5682	n:10000
Cons ci ratio: 2.594231e-02	ci left: 6.862735e-01	ci right 7.044125e-01	k: 6954	n:10000
KS ci ratio: 4.752422e-02	ci left: 3.951583e-01	ci right 4.144971e-01	k: 4048	n:10000
FILIP1L   10000 perm   2 sec   (4320 perm/sec)   p_kst 4.048000e-01   p_cons 6.954000e-01   p_joint 5.682000e-01

Outputting figure to mutsig2_images.part000000000065/FILIP1L.8_3449_10000_0.4048_0.6954_0.5682.png
                gene_name: FILIP1L
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 19 percent done.
FLII
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.272679e-02	ci left: 8.987765e-01	ci right 9.103866e-01	k: 9047	n:10000
Cons ci ratio: 1.657893e-02	ci left: 8.411177e-01	ci right 8.552788e-01	k: 8483	n:10000
KS ci ratio: 2.307221e-02	ci left: 7.340122e-01	ci right 7.512462e-01	k: 7427	n:10000
FLII   10000 perm   3 sec   (3614 perm/sec)   p_kst 7.427000e-01   p_cons 8.483000e-01   p_joint 9.047000e-01

Outputting figure to mutsig2_images.part000000000065/FLII.7_3930_10000_0.7427_0.8483_0.9047.png
                gene_name: FLII
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 21 percent done.
FGFR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.959375e-02	ci left: 1.873727e-01	ci right 2.030052e-01	k: 1951	n:10000
Cons ci ratio: 1.775008e-01	ci left: 4.235985e-02	ci right 5.070688e-02	k: 464	n:10000
KS ci ratio: 2.559385e-02	ci left: 6.920201e-01	ci right 7.100626e-01	k: 7011	n:10000
FGFR2   10000 perm   2 sec   (5159 perm/sec)   p_kst 7.011000e-01   p_cons 4.640000e-02   p_joint 1.951000e-01

Joint ci ratio: 5.659743e-02	ci left: 1.879460e-01	ci right 1.989432e-01	k: 3868	n:20000
Cons ci ratio: 1.257277e-01	ci left: 4.342888e-02	ci right 4.930391e-02	k: 926	n:20000
KS ci ratio: 1.872425e-02	ci left: 6.801696e-01	ci right 6.930761e-01	k: 13733	n:20000
FGFR2   20000 perm   4 sec   (4558 perm/sec)   p_kst 6.866500e-01   p_cons 4.630000e-02   p_joint 1.934000e-01

Joint ci ratio: 4.640771e-02	ci left: 1.876554e-01	ci right 1.966043e-01	k: 5763	n:30000
Cons ci ratio: 1.020239e-01	ci left: 4.450233e-02	ci right 4.931923e-02	k: 1406	n:30000
KS ci ratio: 1.523696e-02	ci left: 6.828230e-01	ci right 6.933405e-01	k: 20643	n:30000
FGFR2   30000 perm   7 sec   (4298 perm/sec)   p_kst 6.881000e-01   p_cons 4.686667e-02   p_joint 1.921000e-01

Joint ci ratio: 3.919976e-02	ci left: 1.960646e-01	ci right 2.039290e-01	k: 7999	n:40000
Cons ci ratio: 8.902986e-02	ci left: 4.416335e-02	ci right 4.830285e-02	k: 1848	n:40000
KS ci ratio: 1.317722e-02	ci left: 6.841364e-01	ci right 6.932362e-01	k: 27548	n:40000
FGFR2   40000 perm   10 sec   (4188 perm/sec)   p_kst 6.887000e-01   p_cons 4.620000e-02   p_joint 1.999750e-01

Outputting figure to mutsig2_images.part000000000065/FGFR2.6_2790_40000_0.6887_0.0462_0.19998.png
                gene_name: FGFR2
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.20 

Current progress: 23 percent done.
FIP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.506606e-01	ci left: 5.860517e-02	ci right 6.825107e-02	k: 633	n:10000
Cons ci ratio: 1.107859e-02	ci left: 9.207974e-01	ci right 9.311528e-01	k: 9261	n:10000
KS ci ratio: 3.389164e-01	ci left: 1.096414e-02	ci right 1.552595e-02	k: 131	n:10000
FIP1L1   10000 perm   2 sec   (4261 perm/sec)   p_kst 1.310000e-02   p_cons 9.261000e-01   p_joint 6.330000e-02

Joint ci ratio: 1.276899e-01	ci left: 4.211982e-02	ci right 4.791339e-02	k: 899	n:20000
Cons ci ratio: 7.771691e-03	ci left: 9.234607e-01	ci right 9.307145e-01	k: 18543	n:20000
KS ci ratio: 2.448786e-01	ci left: 1.110033e-02	ci right 1.424373e-02	k: 252	n:20000
FIP1L1   20000 perm   5 sec   (3690 perm/sec)   p_kst 1.260000e-02   p_cons 9.271500e-01   p_joint 4.495000e-02

Joint ci ratio: 1.184857e-01	ci left: 3.311072e-02	ci right 3.731324e-02	k: 1055	n:30000
Cons ci ratio: 6.320759e-03	ci left: 9.246771e-01	ci right 9.305731e-01	k: 27830	n:30000
KS ci ratio: 2.050674e-01	ci left: 1.079864e-02	ci right 1.329720e-02	k: 360	n:30000
FIP1L1   30000 perm   8 sec   (3728 perm/sec)   p_kst 1.200000e-02   p_cons 9.276667e-01   p_joint 3.516667e-02

Joint ci ratio: 1.045915e-01	ci left: 3.214791e-02	ci right 3.572017e-02	k: 1356	n:40000
Cons ci ratio: 5.487634e-03	ci left: 9.247373e-01	ci right 9.298505e-01	k: 37093	n:40000
KS ci ratio: 1.780316e-01	ci left: 1.090819e-02	ci right 1.306353e-02	k: 478	n:40000
FIP1L1   40000 perm   11 sec   (3723 perm/sec)   p_kst 1.195000e-02   p_cons 9.273250e-01   p_joint 3.390000e-02

Joint ci ratio: 9.260035e-02	ci left: 3.299554e-02	ci right 3.621878e-02	k: 1729	n:50000
Cons ci ratio: 4.911992e-03	ci left: 9.249081e-01	ci right 9.294821e-01	k: 46361	n:50000
KS ci ratio: 1.604273e-01	ci left: 1.085271e-02	ci right 1.276460e-02	k: 589	n:50000
FIP1L1   50000 perm   14 sec   (3672 perm/sec)   p_kst 1.178000e-02   p_cons 9.272200e-01   p_joint 3.458000e-02

Joint ci ratio: 9.027676e-02	ci left: 2.908958e-02	ci right 3.185608e-02	k: 1827	n:60000
Cons ci ratio: 4.490140e-03	ci left: 9.249232e-01	ci right 9.291020e-01	k: 55622	n:60000
KS ci ratio: 1.462408e-01	ci left: 1.096736e-02	ci right 1.271367e-02	k: 709	n:60000
FIP1L1   60000 perm   17 sec   (3635 perm/sec)   p_kst 1.181667e-02   p_cons 9.270333e-01   p_joint 3.045000e-02

Joint ci ratio: 8.752475e-02	ci left: 2.663654e-02	ci right 2.908852e-02	k: 1949	n:70000
Cons ci ratio: 4.165055e-03	ci left: 9.248167e-01	ci right 9.286907e-01	k: 64874	n:70000
KS ci ratio: 1.342762e-01	ci left: 1.122033e-02	ci right 1.284907e-02	k: 841	n:70000
FIP1L1   70000 perm   19 sec   (3601 perm/sec)   p_kst 1.201429e-02   p_cons 9.267714e-01   p_joint 2.784286e-02

Joint ci ratio: 8.600104e-02	ci left: 2.422282e-02	ci right 2.641179e-02	k: 2024	n:80000
Cons ci ratio: 3.886221e-03	ci left: 9.252894e-01	ci right 9.289046e-01	k: 74169	n:80000
KS ci ratio: 1.250323e-01	ci left: 1.137809e-02	ci right 1.290760e-02	k: 970	n:80000
FIP1L1   80000 perm   22 sec   (3556 perm/sec)   p_kst 1.212500e-02   p_cons 9.271125e-01   p_joint 2.530000e-02

Joint ci ratio: 8.254646e-02	ci left: 2.343446e-02	ci right 2.546301e-02	k: 2199	n:90000
Cons ci ratio: 3.652822e-03	ci left: 9.258089e-01	ci right 9.292079e-01	k: 83477	n:90000
KS ci ratio: 1.179021e-01	ci left: 1.141748e-02	ci right 1.285866e-02	k: 1091	n:90000
FIP1L1   90000 perm   26 sec   (3485 perm/sec)   p_kst 1.212222e-02   p_cons 9.275222e-01   p_joint 2.443333e-02

Joint ci ratio: 7.971640e-02	ci left: 2.266799e-02	ci right 2.455978e-02	k: 2360	n:100000
Cons ci ratio: 3.469532e-03	ci left: 9.257339e-01	ci right 9.289612e-01	k: 92736	n:100000
KS ci ratio: 1.125266e-01	ci left: 1.131487e-02	ci right 1.267365e-02	k: 1198	n:100000
FIP1L1   100000 perm   29 sec   (3408 perm/sec)   p_kst 1.198000e-02   p_cons 9.273600e-01   p_joint 2.360000e-02

Joint ci ratio: 8.394952e-02	ci left: 1.861978e-02	ci right 2.026024e-02	k: 2137	n:110000
Cons ci ratio: 3.416309e-03	ci left: 9.213079e-01	ci right 9.244697e-01	k: 101519	n:110000
KS ci ratio: 1.076582e-01	ci left: 1.126754e-02	ci right 1.255838e-02	k: 1309	n:110000
FIP1L1   110000 perm   33 sec   (3363 perm/sec)   p_kst 1.190000e-02   p_cons 9.229000e-01   p_joint 1.942727e-02

Joint ci ratio: 7.822021e-02	ci left: 1.969752e-02	ci right 2.130911e-02	k: 2459	n:120000
Cons ci ratio: 3.268749e-03	ci left: 9.214688e-01	ci right 9.244940e-01	k: 110759	n:120000
KS ci ratio: 1.029325e-01	ci left: 1.132661e-02	ci right 1.256381e-02	k: 1432	n:120000
FIP1L1   120000 perm   36 sec   (3332 perm/sec)   p_kst 1.193333e-02   p_cons 9.229917e-01   p_joint 2.049167e-02

Joint ci ratio: 7.307882e-02	ci left: 2.086192e-02	ci right 2.245182e-02	k: 2814	n:130000
Cons ci ratio: 3.132325e-03	ci left: 9.219022e-01	ci right 9.248020e-01	k: 120037	n:130000
KS ci ratio: 9.939507e-02	ci left: 1.123507e-02	ci right 1.241763e-02	k: 1536	n:130000
FIP1L1   130000 perm   39 sec   (3295 perm/sec)   p_kst 1.181538e-02   p_cons 9.233615e-01   p_joint 2.164615e-02

Outputting figure to mutsig2_images.part000000000065/FIP1L1.6_1888_130000_0.011815_0.92336_0.021646.png
                gene_name: FIP1L1
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.022 

Current progress: 25 percent done.
FKBP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.070134e-01	ci left: 1.119342e-01	ci right 1.246891e-01	k: 1182	n:10000
Cons ci ratio: 6.102425e-02	ci left: 2.831000e-01	ci right 3.010213e-01	k: 2920	n:10000
KS ci ratio: 1.205647e-01	ci left: 8.980798e-02	ci right 1.014288e-01	k: 955	n:10000
FKBP9   10000 perm   2 sec   (5330 perm/sec)   p_kst 9.550000e-02   p_cons 2.920000e-01   p_joint 1.182000e-01

Joint ci ratio: 6.490417e-02	ci left: 1.492205e-01	ci right 1.592803e-01	k: 3084	n:20000
Cons ci ratio: 4.408737e-02	ci left: 2.770123e-01	ci right 2.895508e-01	k: 5665	n:20000
KS ci ratio: 8.520455e-02	ci left: 9.160790e-02	ci right 9.981008e-02	k: 1913	n:20000
FKBP9   20000 perm   4 sec   (4463 perm/sec)   p_kst 9.565000e-02   p_cons 2.832500e-01   p_joint 1.542000e-01

Outputting figure to mutsig2_images.part000000000065/FKBP9.6_1753_20000_0.09565_0.28325_0.1542.png
                gene_name: FKBP9
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.100 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 27 percent done.
FKBPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.618961e-02	ci left: 4.089058e-01	ci right 4.283416e-01	k: 4186	n:10000
Cons ci ratio: 4.097438e-02	ci left: 4.679675e-01	ci right 4.876454e-01	k: 4778	n:10000
KS ci ratio: 8.792570e-02	ci left: 1.584608e-01	ci right 1.731345e-01	k: 1657	n:10000
FKBPL   10000 perm   2 sec   (5230 perm/sec)   p_kst 1.657000e-01   p_cons 4.778000e-01   p_joint 4.186000e-01

Outputting figure to mutsig2_images.part000000000065/FKBPL.6_1054_10000_0.1657_0.4778_0.4186.png
                gene_name: FKBPL
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 29 percent done.
FHDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.948389e-01	ci left: 3.509982e-02	ci right 4.277176e-02	k: 388	n:10000
Cons ci ratio: 1.265054e-01	ci left: 8.203252e-02	ci right 9.320908e-02	k: 875	n:10000
KS ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
FHDC1   10000 perm   2 sec   (4466 perm/sec)   p_kst 2.820000e-02   p_cons 8.750000e-02   p_joint 3.880000e-02

Joint ci ratio: 3.106165e-01	ci left: 6.673885e-03	ci right 9.172365e-03	k: 157	n:20000
Cons ci ratio: 9.213143e-02	ci left: 7.916341e-02	ci right 8.685833e-02	k: 1659	n:20000
KS ci ratio: 1.606734e-01	ci left: 2.657390e-02	ci right 3.126439e-02	k: 577	n:20000
FHDC1   20000 perm   5 sec   (4027 perm/sec)   p_kst 2.885000e-02   p_cons 8.295000e-02   p_joint 7.850000e-03

Joint ci ratio: 1.754506e-01	ci left: 1.492932e-02	ci right 1.783210e-02	k: 490	n:30000
Cons ci ratio: 7.524199e-02	ci left: 7.983646e-02	ci right 8.611125e-02	k: 2488	n:30000
KS ci ratio: 1.298092e-01	ci left: 2.758204e-02	ci right 3.144312e-02	k: 884	n:30000
FHDC1   30000 perm   8 sec   (3776 perm/sec)   p_kst 2.946667e-02   p_cons 8.293333e-02   p_joint 1.633333e-02

Joint ci ratio: 1.740303e-01	ci left: 1.143422e-02	ci right 1.363740e-02	k: 500	n:40000
Cons ci ratio: 6.519026e-02	ci left: 8.019110e-02	ci right 8.561963e-02	k: 3315	n:40000
KS ci ratio: 1.154265e-01	ci left: 2.640513e-02	ci right 2.966387e-02	k: 1120	n:40000
FHDC1   40000 perm   11 sec   (3596 perm/sec)   p_kst 2.800000e-02   p_cons 8.287500e-02   p_joint 1.250000e-02

Joint ci ratio: 1.633956e-01	ci left: 1.044955e-02	ci right 1.232782e-02	k: 568	n:50000
Cons ci ratio: 5.819332e-02	ci left: 8.077369e-02	ci right 8.563482e-02	k: 4159	n:50000
KS ci ratio: 1.032504e-01	ci left: 2.657143e-02	ci right 2.948371e-02	k: 1400	n:50000
FHDC1   50000 perm   15 sec   (3431 perm/sec)   p_kst 2.800000e-02   p_cons 8.318000e-02   p_joint 1.136000e-02

Joint ci ratio: 1.411008e-01	ci left: 1.180323e-02	ci right 1.361103e-02	k: 761	n:60000
Cons ci ratio: 5.197315e-02	ci left: 8.434482e-02	ci right 8.886193e-02	k: 5195	n:60000
KS ci ratio: 9.437575e-02	ci left: 2.662937e-02	ci right 2.928322e-02	k: 1676	n:60000
FHDC1   60000 perm   18 sec   (3304 perm/sec)   p_kst 2.793333e-02   p_cons 8.658333e-02   p_joint 1.268333e-02

Joint ci ratio: 1.354204e-01	ci left: 1.102700e-02	ci right 1.264242e-02	k: 827	n:70000
Cons ci ratio: 4.823116e-02	ci left: 8.414505e-02	ci right 8.831789e-02	k: 6035	n:70000
KS ci ratio: 8.773323e-02	ci left: 2.651071e-02	ci right 2.895722e-02	k: 1940	n:70000
FHDC1   70000 perm   22 sec   (3205 perm/sec)   p_kst 2.771429e-02   p_cons 8.621429e-02   p_joint 1.181429e-02

Joint ci ratio: 1.298559e-01	ci left: 1.053068e-02	ci right 1.200509e-02	k: 900	n:80000
Cons ci ratio: 4.510287e-02	ci left: 8.432581e-02	ci right 8.822926e-02	k: 6901	n:80000
KS ci ratio: 8.216774e-02	ci left: 2.652469e-02	ci right 2.880974e-02	k: 2212	n:80000
FHDC1   80000 perm   26 sec   (3130 perm/sec)   p_kst 2.765000e-02   p_cons 8.626250e-02   p_joint 1.125000e-02

Joint ci ratio: 1.227128e-01	ci left: 1.052271e-02	ci right 1.190907e-02	k: 1008	n:90000
Cons ci ratio: 4.256167e-02	ci left: 8.429717e-02	ci right 8.797400e-02	k: 7751	n:90000
KS ci ratio: 7.754264e-02	ci left: 2.653939e-02	ci right 2.869120e-02	k: 2484	n:90000
FHDC1   90000 perm   29 sec   (3071 perm/sec)   p_kst 2.760000e-02   p_cons 8.612222e-02   p_joint 1.120000e-02

Joint ci ratio: 1.242206e-01	ci left: 9.247157e-03	ci right 1.048152e-02	k: 985	n:100000
Cons ci ratio: 4.047362e-02	ci left: 8.402164e-02	ci right 8.750243e-02	k: 8575	n:100000
KS ci ratio: 7.370234e-02	ci left: 2.649514e-02	ci right 2.853239e-02	k: 2750	n:100000
FHDC1   100000 perm   33 sec   (3043 perm/sec)   p_kst 2.750000e-02   p_cons 8.575000e-02   p_joint 9.850000e-03

Joint ci ratio: 1.088845e-01	ci left: 1.101097e-02	ci right 1.228770e-02	k: 1280	n:110000
Cons ci ratio: 3.863850e-02	ci left: 8.390802e-02	ci right 8.722296e-02	k: 9411	n:110000
KS ci ratio: 7.058609e-02	ci left: 2.630920e-02	ci right 2.824310e-02	k: 2999	n:110000
FHDC1   110000 perm   37 sec   (2978 perm/sec)   p_kst 2.726364e-02   p_cons 8.555455e-02   p_joint 1.163636e-02

Joint ci ratio: 1.049909e-01	ci left: 1.088006e-02	ci right 1.209372e-02	k: 1377	n:120000
Cons ci ratio: 3.799719e-02	ci left: 7.991664e-02	ci right 8.302029e-02	k: 9775	n:120000
KS ci ratio: 6.749341e-02	ci left: 2.641806e-02	ci right 2.827154e-02	k: 3280	n:120000
FHDC1   120000 perm   41 sec   (2924 perm/sec)   p_kst 2.733333e-02   p_cons 8.145833e-02   p_joint 1.147500e-02

Joint ci ratio: 1.070992e-01	ci left: 9.653414e-03	ci right 1.075321e-02	k: 1325	n:130000
Cons ci ratio: 3.648340e-02	ci left: 8.007161e-02	ci right 8.305478e-02	k: 10602	n:130000
KS ci ratio: 6.435781e-02	ci left: 2.685245e-02	ci right 2.864562e-02	k: 3606	n:130000
FHDC1   130000 perm   45 sec   (2880 perm/sec)   p_kst 2.773846e-02   p_cons 8.155385e-02   p_joint 1.019231e-02

Joint ci ratio: 1.102445e-01	ci left: 8.456335e-03	ci right 9.449877e-03	k: 1252	n:140000
Cons ci ratio: 3.513388e-02	ci left: 8.022072e-02	ci right 8.309664e-02	k: 11431	n:140000
KS ci ratio: 6.217714e-02	ci left: 2.674808e-02	ci right 2.847156e-02	k: 3864	n:140000
FHDC1   140000 perm   49 sec   (2855 perm/sec)   p_kst 2.760000e-02   p_cons 8.165000e-02   p_joint 8.942857e-03

Joint ci ratio: 1.137627e-01	ci left: 7.406353e-03	ci right 8.306160e-03	k: 1177	n:150000
Cons ci ratio: 3.399180e-02	ci left: 8.005403e-02	ci right 8.282884e-02	k: 12215	n:150000
KS ci ratio: 6.009923e-02	ci left: 2.675048e-02	ci right 2.841451e-02	k: 4136	n:150000
FHDC1   150000 perm   53 sec   (2835 perm/sec)   p_kst 2.757333e-02   p_cons 8.143333e-02   p_joint 7.846667e-03

Joint ci ratio: 1.140349e-01	ci left: 6.912996e-03	ci right 7.755005e-03	k: 1172	n:160000
Cons ci ratio: 3.295429e-02	ci left: 7.990952e-02	ci right 8.259318e-02	k: 12999	n:160000
KS ci ratio: 5.819626e-02	ci left: 2.677191e-02	ci right 2.838277e-02	k: 4411	n:160000
FHDC1   160000 perm   57 sec   (2808 perm/sec)   p_kst 2.756875e-02   p_cons 8.124375e-02   p_joint 7.325000e-03

Joint ci ratio: 1.102880e-01	ci left: 6.969465e-03	ci right 7.788646e-03	k: 1253	n:170000
Cons ci ratio: 3.197099e-02	ci left: 7.994667e-02	ci right 8.254998e-02	k: 13811	n:170000
KS ci ratio: 5.630293e-02	ci left: 2.694240e-02	ci right 2.850905e-02	k: 4712	n:170000
FHDC1   170000 perm   61 sec   (2786 perm/sec)   p_kst 2.771765e-02   p_cons 8.124118e-02   p_joint 7.370588e-03

Joint ci ratio: 8.604121e-02	ci left: 1.090924e-02	ci right 1.189548e-02	k: 2051	n:180000
Cons ci ratio: 3.022603e-02	ci left: 8.416247e-02	ci right 8.675090e-02	k: 15381	n:180000
KS ci ratio: 5.471795e-02	ci left: 2.696314e-02	ci right 2.848546e-02	k: 4989	n:180000
FHDC1   180000 perm   65 sec   (2766 perm/sec)   p_kst 2.771667e-02   p_cons 8.545000e-02   p_joint 1.139444e-02

Outputting figure to mutsig2_images.part000000000065/FHDC1.5_3476_180000_0.027717_0.08545_0.011394.png
                gene_name: FHDC1
               theta_stop: 0.086 
                    nperm: 180000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 31 percent done.
FIGNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.208266e-02	ci left: 7.505939e-01	ci right 7.674550e-01	k: 7591	n:10000
Cons ci ratio: 3.764171e-02	ci left: 5.103535e-01	ci right 5.300347e-01	k: 5202	n:10000
KS ci ratio: 3.401542e-02	ci left: 5.606285e-01	ci right 5.801305e-01	k: 5704	n:10000
FIGNL1   10000 perm   2 sec   (5009 perm/sec)   p_kst 5.704000e-01   p_cons 5.202000e-01   p_joint 7.591000e-01

Outputting figure to mutsig2_images.part000000000065/FIGNL1.5_2029_10000_0.5704_0.5202_0.7591.png
                gene_name: FIGNL1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 33 percent done.
FKBP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.356124e-02	ci left: 7.258284e-01	ci right 7.432348e-01	k: 7346	n:10000
Cons ci ratio: 1.748396e-02	ci left: 8.266621e-01	ci right 8.413428e-01	k: 8341	n:10000
KS ci ratio: 3.405707e-02	ci left: 5.600270e-01	ci right 5.795323e-01	k: 5698	n:10000
FKBP15   10000 perm   3 sec   (3890 perm/sec)   p_kst 5.698000e-01   p_cons 8.341000e-01   p_joint 7.346000e-01

Outputting figure to mutsig2_images.part000000000065/FKBP15.5_3772_10000_0.5698_0.8341_0.7346.png
                gene_name: FKBP15
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 35 percent done.
FLRT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.610910e-02	ci left: 3.187002e-01	ci right 3.372001e-01	k: 3279	n:10000
Cons ci ratio: 1.168825e-01	ci left: 9.516088e-02	ci right 1.070726e-01	k: 1010	n:10000
KS ci ratio: 2.127305e-02	ci left: 7.641548e-01	ci right 7.806862e-01	k: 7725	n:10000
FLRT3   10000 perm   2 sec   (5295 perm/sec)   p_kst 7.725000e-01   p_cons 1.010000e-01   p_joint 3.279000e-01

Joint ci ratio: 3.708690e-02	ci left: 3.517004e-01	ci right 3.650408e-01	k: 7167	n:20000
Cons ci ratio: 8.103225e-02	ci left: 1.004895e-01	ci right 1.090258e-01	k: 2094	n:20000
KS ci ratio: 1.511073e-02	ci left: 7.650115e-01	ci right 7.767096e-01	k: 15418	n:20000
FLRT3   20000 perm   5 sec   (4211 perm/sec)   p_kst 7.709000e-01   p_cons 1.047000e-01   p_joint 3.583500e-01

Outputting figure to mutsig2_images.part000000000065/FLRT3.5_1954_20000_0.7709_0.1047_0.35835.png
                gene_name: FLRT3
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 38 percent done.
FGF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.747908e-02	ci left: 1.958434e-01	ci right 2.117295e-01	k: 2037	n:10000
Cons ci ratio: 1.033322e-01	ci left: 1.192622e-01	ci right 1.323567e-01	k: 1257	n:10000
KS ci ratio: 7.686376e-02	ci left: 1.984054e-01	ci right 2.143660e-01	k: 2063	n:10000
FGF5   10000 perm   2 sec   (5726 perm/sec)   p_kst 2.063000e-01   p_cons 1.257000e-01   p_joint 2.037000e-01

Joint ci ratio: 5.770006e-02	ci left: 1.820619e-01	ci right 1.929291e-01	k: 3749	n:20000
Cons ci ratio: 7.588973e-02	ci left: 1.132155e-01	ci right 1.221960e-01	k: 2353	n:20000
KS ci ratio: 5.380997e-02	ci left: 2.040261e-01	ci right 2.153585e-01	k: 4193	n:20000
FGF5   20000 perm   4 sec   (5134 perm/sec)   p_kst 2.096500e-01   p_cons 1.176500e-01   p_joint 1.874500e-01

Outputting figure to mutsig2_images.part000000000065/FGF5.4_819_20000_0.20965_0.11765_0.18745.png
                gene_name: FGF5
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 40 percent done.
FGFR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.743434e-02	ci left: 6.618937e-01	ci right 6.804065e-01	k: 6712	n:10000
Cons ci ratio: 3.511784e-02	ci left: 5.448942e-01	ci right 5.644739e-01	k: 5547	n:10000
KS ci ratio: 3.858751e-02	ci left: 4.979503e-01	ci right 5.176452e-01	k: 5078	n:10000
FGFR1   10000 perm   2 sec   (4697 perm/sec)   p_kst 5.078000e-01   p_cons 5.547000e-01   p_joint 6.712000e-01

Outputting figure to mutsig2_images.part000000000065/FGFR1.4_2951_10000_0.5078_0.5547_0.6712.png
                gene_name: FGFR1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 42 percent done.
FGG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.869935e-02	ci left: 6.415648e-01	ci right 6.603472e-01	k: 6510	n:10000
Cons ci ratio: 2.769573e-02	ci left: 6.576653e-01	ci right 6.762373e-01	k: 6670	n:10000
KS ci ratio: 4.420689e-02	ci left: 4.303394e-01	ci right 4.498955e-01	k: 4401	n:10000
FGG   10000 perm   2 sec   (6370 perm/sec)   p_kst 4.401000e-01   p_cons 6.670000e-01   p_joint 6.510000e-01

Outputting figure to mutsig2_images.part000000000065/FGG.4_1417_10000_0.4401_0.667_0.651.png
                gene_name: FGG
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 44 percent done.
FHL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.517934e-02	ci left: 6.988779e-01	ci right 7.168009e-01	k: 7079	n:10000
Cons ci ratio: 9.122527e-03	ci left: 9.441937e-01	ci right 9.529427e-01	k: 9487	n:10000
KS ci ratio: 3.029653e-02	ci left: 6.164309e-01	ci right 6.354957e-01	k: 6260	n:10000
FHL5   10000 perm   2 sec   (6258 perm/sec)   p_kst 6.260000e-01   p_cons 9.487000e-01   p_joint 7.079000e-01

Outputting figure to mutsig2_images.part000000000065/FHL5.4_875_10000_0.626_0.9487_0.7079.png
                gene_name: FHL5
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 46 percent done.
FHOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.299376e-02	ci left: 7.353260e-01	ci right 7.525317e-01	k: 7440	n:10000
Cons ci ratio: 1.740814e-02	ci left: 8.278829e-01	ci right 8.425213e-01	k: 8353	n:10000
KS ci ratio: 4.394775e-02	ci left: 4.332319e-01	ci right 4.528014e-01	k: 4430	n:10000
FHOD1   10000 perm   2 sec   (4474 perm/sec)   p_kst 4.430000e-01   p_cons 8.353000e-01   p_joint 7.440000e-01

Outputting figure to mutsig2_images.part000000000065/FHOD1.4_3583_10000_0.443_0.8353_0.744.png
                gene_name: FHOD1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 48 percent done.
FLRT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.275454e-01	ci left: 8.077027e-02	ci right 9.187210e-02	k: 862	n:10000
Cons ci ratio: 6.106031e-03	ci left: 9.732324e-01	ci right 9.792858e-01	k: 9764	n:10000
KS ci ratio: 2.225082e-01	ci left: 2.674401e-02	ci right 3.353336e-02	k: 300	n:10000
FLRT1   10000 perm   2 sec   (5403 perm/sec)   p_kst 3.000000e-02   p_cons 9.764000e-01   p_joint 8.620000e-02

Joint ci ratio: 8.409164e-02	ci left: 9.386410e-02	ci right 1.021532e-01	k: 1959	n:20000
Cons ci ratio: 4.424291e-03	ci left: 9.729494e-01	ci right 9.773110e-01	k: 19504	n:20000
KS ci ratio: 1.589819e-01	ci left: 2.715054e-02	ci right 3.188756e-02	k: 589	n:20000
FLRT1   20000 perm   4 sec   (4820 perm/sec)   p_kst 2.945000e-02   p_cons 9.752000e-01   p_joint 9.795000e-02

Joint ci ratio: 8.604835e-02	ci left: 6.190927e-02	ci right 6.750872e-02	k: 1940	n:30000
Cons ci ratio: 3.500431e-03	ci left: 9.748949e-01	ci right 9.783453e-01	k: 29300	n:30000
KS ci ratio: 1.343342e-01	ci left: 2.574314e-02	ci right 2.948243e-02	k: 827	n:30000
FLRT1   30000 perm   6 sec   (4626 perm/sec)   p_kst 2.756667e-02   p_cons 9.766667e-01   p_joint 6.466667e-02

Joint ci ratio: 7.041812e-02	ci left: 6.936254e-02	ci right 7.444982e-02	k: 2875	n:40000
Cons ci ratio: 3.252333e-03	ci left: 9.715958e-01	ci right 9.747850e-01	k: 38929	n:40000
KS ci ratio: 1.150050e-01	ci left: 2.659952e-02	ci right 2.986945e-02	k: 1128	n:40000
FLRT1   40000 perm   9 sec   (4395 perm/sec)   p_kst 2.820000e-02   p_cons 9.732250e-01   p_joint 7.187500e-02

Joint ci ratio: 5.974196e-02	ci left: 7.690660e-02	ci right 8.166238e-02	k: 3963	n:50000
Cons ci ratio: 2.896720e-03	ci left: 9.719928e-01	ci right 9.748319e-01	k: 48672	n:50000
KS ci ratio: 1.044061e-01	ci left: 2.598660e-02	ci right 2.886862e-02	k: 1370	n:50000
FLRT1   50000 perm   12 sec   (4246 perm/sec)   p_kst 2.740000e-02   p_cons 9.734400e-01   p_joint 7.926000e-02

Joint ci ratio: 5.465416e-02	ci left: 7.680437e-02	ci right 8.113646e-02	k: 4737	n:60000
Cons ci ratio: 2.614564e-03	ci left: 9.727122e-01	ci right 9.752750e-01	k: 58441	n:60000
KS ci ratio: 9.576528e-02	ci left: 2.586417e-02	ci right 2.848184e-02	k: 1629	n:60000
FLRT1   60000 perm   14 sec   (4166 perm/sec)   p_kst 2.715000e-02   p_cons 9.740167e-01   p_joint 7.895000e-02

Outputting figure to mutsig2_images.part000000000065/FLRT1.4_2029_60000_0.02715_0.97402_0.07895.png
                gene_name: FLRT1
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.081 

Current progress: 50 percent done.
FGF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.464907e-02	ci left: 4.254529e-01	ci right 4.449849e-01	k: 4352	n:10000
Cons ci ratio: 7.837355e-02	ci left: 1.921984e-01	ci right 2.079767e-01	k: 2000	n:10000
KS ci ratio: 1.343032e-02	ci left: 8.888262e-01	ci right 9.009427e-01	k: 8950	n:10000
FGF6   10000 perm   2 sec   (5781 perm/sec)   p_kst 8.950000e-01   p_cons 2.000000e-01   p_joint 4.352000e-01

Outputting figure to mutsig2_images.part000000000065/FGF6.3_639_10000_0.895_0.2_0.4352.png
                gene_name: FGF6
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 52 percent done.
FGL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.612609e-02	ci left: 1.641585e-01	ci right 1.790334e-01	k: 1715	n:10000
Cons ci ratio: 1.256428e-01	ci left: 8.310086e-02	ci right 9.434008e-02	k: 886	n:10000
KS ci ratio: 2.813322e-02	ci left: 6.506199e-01	ci right 6.692868e-01	k: 6600	n:10000
FGL1   10000 perm   2 sec   (6092 perm/sec)   p_kst 6.600000e-01   p_cons 8.860000e-02   p_joint 1.715000e-01

Joint ci ratio: 5.738014e-02	ci left: 1.837429e-01	ci right 1.946476e-01	k: 3783	n:20000
Cons ci ratio: 8.948263e-02	ci left: 8.361907e-02	ci right 9.150132e-02	k: 1750	n:20000
KS ci ratio: 2.000711e-02	ci left: 6.508255e-01	ci right 6.640287e-01	k: 13149	n:20000
FGL1   20000 perm   4 sec   (5262 perm/sec)   p_kst 6.574500e-01   p_cons 8.750000e-02   p_joint 1.891500e-01

Outputting figure to mutsig2_images.part000000000065/FGL1.3_967_20000_0.65745_0.0875_0.18915.png
                gene_name: FGL1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 54 percent done.
FIG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.755134e-02	ci left: 5.115541e-01	ci right 5.312334e-01	k: 5214	n:10000
Cons ci ratio: 7.834908e-02	ci left: 1.922969e-01	ci right 2.080782e-01	k: 2001	n:10000
KS ci ratio: 3.143295e-02	ci left: 5.989536e-01	ci right 6.181831e-01	k: 6086	n:10000
FIG4   10000 perm   2 sec   (5055 perm/sec)   p_kst 6.086000e-01   p_cons 2.001000e-01   p_joint 5.214000e-01

Outputting figure to mutsig2_images.part000000000065/FIG4.3_2816_10000_0.6086_0.2001_0.5214.png
                gene_name: FIG4
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 56 percent done.
FKBP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.050099e-01	ci left: 1.158415e-01	ci right 1.287794e-01	k: 1222	n:10000
Cons ci ratio: 1.745679e-01	ci left: 4.379660e-02	ci right 5.226918e-02	k: 479	n:10000
KS ci ratio: 8.219310e-02	ci left: 1.776288e-01	ci right 1.929550e-01	k: 1852	n:10000
FKBP11   10000 perm   2 sec   (6302 perm/sec)   p_kst 1.852000e-01   p_cons 4.790000e-02   p_joint 1.222000e-01

Joint ci ratio: 6.810596e-02	ci left: 1.372391e-01	ci right 1.469652e-01	k: 2841	n:20000
Cons ci ratio: 1.233734e-01	ci left: 4.507829e-02	ci right 5.105398e-02	k: 960	n:20000
KS ci ratio: 5.825519e-02	ci left: 1.791948e-01	ci right 1.899971e-01	k: 3691	n:20000
FKBP11   20000 perm   4 sec   (5411 perm/sec)   p_kst 1.845500e-01   p_cons 4.800000e-02   p_joint 1.420500e-01

Joint ci ratio: 5.257515e-02	ci left: 1.522075e-01	ci right 1.604591e-01	k: 4689	n:30000
Cons ci ratio: 1.013829e-01	ci left: 4.505525e-02	ci right 4.989954e-02	k: 1423	n:30000
KS ci ratio: 4.746555e-02	ci left: 1.808182e-01	ci right 1.896428e-01	k: 5556	n:30000
FKBP11   30000 perm   6 sec   (5127 perm/sec)   p_kst 1.852000e-01   p_cons 4.743333e-02   p_joint 1.563000e-01

Joint ci ratio: 5.195726e-02	ci left: 1.213289e-01	ci right 1.278258e-01	k: 4982	n:40000
Cons ci ratio: 8.723918e-02	ci left: 4.594998e-02	ci right 5.016594e-02	k: 1921	n:40000
KS ci ratio: 3.983568e-02	ci left: 1.910030e-01	ci right 1.987913e-01	k: 7795	n:40000
FKBP11   40000 perm   8 sec   (4865 perm/sec)   p_kst 1.948750e-01   p_cons 4.802500e-02   p_joint 1.245500e-01

Outputting figure to mutsig2_images.part000000000065/FKBP11.3_687_40000_0.19487_0.048025_0.12455.png
                gene_name: FKBP11
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 58 percent done.
FKTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.894323e-02	ci left: 8.028818e-01	ci right 8.183368e-01	k: 8107	n:10000
Cons ci ratio: 5.520517e-02	ci left: 3.258476e-01	ci right 3.444485e-01	k: 3351	n:10000
KS ci ratio: 2.474170e-02	ci left: 7.061416e-01	ci right 7.239330e-01	k: 7151	n:10000
FKTN   10000 perm   2 sec   (5887 perm/sec)   p_kst 7.151000e-01   p_cons 3.351000e-01   p_joint 8.107000e-01

Outputting figure to mutsig2_images.part000000000065/FKTN.3_1422_10000_0.7151_0.3351_0.8107.png
                gene_name: FKTN
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 60 percent done.
FLJ43860
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.575590e-02	ci left: 4.134900e-01	ci right 4.329547e-01	k: 4232	n:10000
Cons ci ratio: 2.255029e-03	ci left: 9.954855e-01	ci right 9.978102e-01	k: 9968	n:10000
KS ci ratio: 6.726746e-02	ci left: 2.448978e-01	ci right 2.620461e-01	k: 2534	n:10000
FLJ43860   10000 perm   2 sec   (4752 perm/sec)   p_kst 2.534000e-01   p_cons 9.968000e-01   p_joint 4.232000e-01

Outputting figure to mutsig2_images.part000000000065/FLJ43860.3_4077_10000_0.2534_0.9968_0.4232.png
                gene_name: FLJ43860
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 62 percent done.
FLNA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.287024e-02	ci left: 5.773758e-01	ci right 5.967734e-01	k: 5871	n:10000
KS ci ratio: 1.634004e-02	ci left: 8.448877e-01	ci right 8.589066e-01	k: 8520	n:10000
FLNA   10000 perm   3 sec   (3040 perm/sec)   p_kst 8.520000e-01   p_cons 5.871000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FLNA.3_8132_10000_0.852_0.5871_1.png
                gene_name: FLNA
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
FLOT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.668639e-01	ci left: 5.372463e-03	ci right 8.724383e-03	k: 69	n:10000
Cons ci ratio: 3.277720e-01	ci left: 1.178961e-02	ci right 1.649967e-02	k: 140	n:10000
KS ci ratio: 1.040429e-01	ci left: 1.177960e-01	ci right 1.308238e-01	k: 1242	n:10000
FLOT1   10000 perm   2 sec   (5083 perm/sec)   p_kst 1.242000e-01   p_cons 1.400000e-02   p_joint 6.900000e-03

Joint ci ratio: 2.079889e-01	ci left: 1.563326e-02	ci right 1.930895e-02	k: 348	n:20000
Cons ci ratio: 2.238557e-01	ci left: 1.340842e-02	ci right 1.683467e-02	k: 301	n:20000
KS ci ratio: 7.372326e-02	ci left: 1.192654e-01	ci right 1.284443e-01	k: 2476	n:20000
FLOT1   20000 perm   4 sec   (4878 perm/sec)   p_kst 1.238000e-01   p_cons 1.505000e-02   p_joint 1.740000e-02

Joint ci ratio: 1.563089e-01	ci left: 1.892640e-02	ci right 2.216738e-02	k: 615	n:30000
Cons ci ratio: 1.821674e-01	ci left: 1.381413e-02	ci right 1.661424e-02	k: 455	n:30000
KS ci ratio: 6.071382e-02	ci left: 1.182836e-01	ci right 1.257231e-01	k: 3659	n:30000
FLOT1   30000 perm   6 sec   (4755 perm/sec)   p_kst 1.219667e-01   p_cons 1.516667e-02   p_joint 2.050000e-02

Joint ci ratio: 1.008437e-01	ci left: 3.456149e-02	ci right 3.825621e-02	k: 1455	n:40000
Cons ci ratio: 1.702833e-01	ci left: 1.196079e-02	ci right 1.421072e-02	k: 522	n:40000
KS ci ratio: 5.207072e-02	ci left: 1.208592e-01	ci right 1.273455e-01	k: 4963	n:40000
FLOT1   40000 perm   9 sec   (4620 perm/sec)   p_kst 1.240750e-01   p_cons 1.305000e-02   p_joint 3.637500e-02

Joint ci ratio: 1.345184e-01	ci left: 1.557557e-02	ci right 1.784104e-02	k: 834	n:50000
Cons ci ratio: 1.398971e-01	ci left: 1.437749e-02	ci right 1.655929e-02	k: 772	n:50000
KS ci ratio: 4.666374e-02	ci left: 1.207865e-01	ci right 1.265773e-01	k: 6183	n:50000
FLOT1   50000 perm   11 sec   (4533 perm/sec)   p_kst 1.236600e-01   p_cons 1.544000e-02   p_joint 1.668000e-02

Joint ci ratio: 1.043402e-01	ci left: 2.178284e-02	ci right 2.419693e-02	k: 1378	n:60000
Cons ci ratio: 1.274712e-01	ci left: 1.452672e-02	ci right 1.652054e-02	k: 930	n:60000
KS ci ratio: 4.245387e-02	ci left: 1.217691e-01	ci right 1.270673e-01	k: 7464	n:60000
FLOT1   60000 perm   14 sec   (4427 perm/sec)   p_kst 1.244000e-01   p_cons 1.550000e-02   p_joint 2.296667e-02

Joint ci ratio: 1.039022e-01	ci left: 1.889214e-02	ci right 2.097649e-02	k: 1394	n:70000
Cons ci ratio: 1.178594e-01	ci left: 1.463948e-02	ci right 1.648670e-02	k: 1088	n:70000
KS ci ratio: 3.937485e-02	ci left: 1.215811e-01	ci right 1.264787e-01	k: 8681	n:70000
FLOT1   70000 perm   16 sec   (4320 perm/sec)   p_kst 1.240143e-01   p_cons 1.554286e-02   p_joint 1.991429e-02

Joint ci ratio: 9.941896e-02	ci left: 1.811395e-02	ci right 2.002115e-02	k: 1524	n:80000
Cons ci ratio: 1.103183e-01	ci left: 1.467967e-02	ci right 1.640573e-02	k: 1242	n:80000
KS ci ratio: 3.689401e-02	ci left: 1.213764e-01	ci right 1.259510e-01	k: 9892	n:80000
FLOT1   80000 perm   19 sec   (4203 perm/sec)   p_kst 1.236500e-01   p_cons 1.552500e-02   p_joint 1.905000e-02

Joint ci ratio: 9.890141e-02	ci left: 1.630640e-02	ci right 1.801381e-02	k: 1543	n:90000
Cons ci ratio: 1.040611e-01	ci left: 1.471386e-02	ci right 1.633980e-02	k: 1396	n:90000
KS ci ratio: 3.489614e-02	ci left: 1.208168e-01	ci right 1.251187e-01	k: 11066	n:90000
FLOT1   90000 perm   22 sec   (4127 perm/sec)   p_kst 1.229556e-01   p_cons 1.551111e-02   p_joint 1.714444e-02

Joint ci ratio: 1.062855e-01	ci left: 1.270624e-02	ci right 1.414219e-02	k: 1341	n:100000
Cons ci ratio: 9.796171e-02	ci left: 1.498738e-02	ci right 1.654089e-02	k: 1575	n:100000
KS ci ratio: 3.313716e-02	ci left: 1.207221e-01	ci right 1.247998e-01	k: 12275	n:100000
FLOT1   100000 perm   25 sec   (4063 perm/sec)   p_kst 1.227500e-01   p_cons 1.575000e-02   p_joint 1.341000e-02

Joint ci ratio: 1.068765e-01	ci left: 1.143569e-02	ci right 1.273568e-02	k: 1328	n:110000
Cons ci ratio: 9.317379e-02	ci left: 1.509796e-02	ci right 1.658227e-02	k: 1741	n:110000
KS ci ratio: 3.163191e-02	ci left: 1.205679e-01	ci right 1.244520e-01	k: 13475	n:110000
FLOT1   110000 perm   28 sec   (3979 perm/sec)   p_kst 1.225000e-01   p_cons 1.582727e-02   p_joint 1.207273e-02

Joint ci ratio: 9.473749e-02	ci left: 1.339981e-02	ci right 1.474049e-02	k: 1687	n:120000
Cons ci ratio: 8.912054e-02	ci left: 1.515905e-02	ci right 1.658115e-02	k: 1903	n:120000
KS ci ratio: 3.025254e-02	ci left: 1.208818e-01	ci right 1.246032e-01	k: 14728	n:120000
FLOT1   120000 perm   31 sec   (3905 perm/sec)   p_kst 1.227333e-01   p_cons 1.585833e-02   p_joint 1.405833e-02

Outputting figure to mutsig2_images.part000000000065/FLOT1.3_1332_120000_0.12273_0.015858_0.014058.png
                gene_name: FLOT1
               theta_stop: 0.095 
                    nperm: 120000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.015 

Current progress: 67 percent done.
FGFBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.922911e-01	ci left: 4.756711e-03	ci right 7.941167e-03	k: 62	n:10000
Cons ci ratio: 2.903464e-01	ci left: 1.529963e-02	ci right 2.058652e-02	k: 178	n:10000
KS ci ratio: 9.755860e-02	ci left: 1.321775e-01	ci right 1.458335e-01	k: 1389	n:10000
FGFBP1   10000 perm   1 sec   (6696 perm/sec)   p_kst 1.389000e-01   p_cons 1.780000e-02   p_joint 6.200000e-03

Joint ci ratio: 1.456506e-01	ci left: 3.239930e-02	ci right 3.753705e-02	k: 698	n:20000
Cons ci ratio: 1.975832e-01	ci left: 1.739087e-02	ci right 2.125067e-02	k: 385	n:20000
KS ci ratio: 6.785568e-02	ci left: 1.381262e-01	ci right 1.478779e-01	k: 2859	n:20000
FGFBP1   20000 perm   3 sec   (5796 perm/sec)   p_kst 1.429500e-01   p_cons 1.925000e-02   p_joint 3.490000e-02

Joint ci ratio: 1.606216e-01	ci left: 1.790127e-02	ci right 2.105943e-02	k: 583	n:30000
Cons ci ratio: 1.629124e-01	ci left: 1.738915e-02	ci right 2.050500e-02	k: 567	n:30000
KS ci ratio: 5.494181e-02	ci left: 1.410665e-01	ci right 1.490691e-01	k: 4351	n:30000
FGFBP1   30000 perm   5 sec   (5466 perm/sec)   p_kst 1.450333e-01   p_cons 1.890000e-02   p_joint 1.943333e-02

Joint ci ratio: 1.743832e-01	ci left: 1.138637e-02	ci right 1.358525e-02	k: 498	n:40000
Cons ci ratio: 1.391637e-01	ci left: 1.809497e-02	ci right 2.082543e-02	k: 777	n:40000
KS ci ratio: 4.753643e-02	ci left: 1.418351e-01	ci right 1.487665e-01	k: 5811	n:40000
FGFBP1   40000 perm   8 sec   (5255 perm/sec)   p_kst 1.452750e-01   p_cons 1.942500e-02   p_joint 1.245000e-02

Joint ci ratio: 1.780601e-01	ci left: 8.744768e-03	ci right 1.047288e-02	k: 479	n:50000
Cons ci ratio: 1.257641e-01	ci left: 1.786008e-02	ci right 2.027621e-02	k: 952	n:50000
KS ci ratio: 4.237813e-02	ci left: 1.430147e-01	ci right 1.492265e-01	k: 7305	n:50000
FGFBP1   50000 perm   10 sec   (5099 perm/sec)   p_kst 1.461000e-01   p_cons 1.904000e-02   p_joint 9.580000e-03

Joint ci ratio: 1.464496e-01	ci left: 1.093524e-02	ci right 1.267913e-02	k: 707	n:60000
Cons ci ratio: 1.154567e-01	ci left: 1.776062e-02	ci right 1.995293e-02	k: 1130	n:60000
KS ci ratio: 3.872254e-02	ci left: 1.430512e-01	ci right 1.487164e-01	k: 8752	n:60000
FGFBP1   60000 perm   12 sec   (4958 perm/sec)   p_kst 1.458667e-01   p_cons 1.883333e-02   p_joint 1.178333e-02

Joint ci ratio: 1.346002e-01	ci left: 1.116508e-02	ci right 1.279003e-02	k: 837	n:70000
Cons ci ratio: 1.070785e-01	ci left: 1.777888e-02	ci right 1.980414e-02	k: 1314	n:70000
KS ci ratio: 3.581079e-02	ci left: 1.435336e-01	ci right 1.487815e-01	k: 10230	n:70000
FGFBP1   70000 perm   14 sec   (4833 perm/sec)   p_kst 1.461429e-01   p_cons 1.877143e-02   p_joint 1.195714e-02

Joint ci ratio: 1.193159e-01	ci left: 1.251762e-02	ci right 1.411796e-02	k: 1064	n:80000
Cons ci ratio: 1.000224e-01	ci left: 1.789446e-02	ci right 1.979066e-02	k: 1506	n:80000
KS ci ratio: 3.350730e-02	ci left: 1.436342e-01	ci right 1.485415e-01	k: 11686	n:80000
FGFBP1   80000 perm   17 sec   (4726 perm/sec)   p_kst 1.460750e-01   p_cons 1.882500e-02   p_joint 1.330000e-02

Joint ci ratio: 1.177930e-01	ci left: 1.143906e-02	ci right 1.288153e-02	k: 1093	n:90000
Cons ci ratio: 9.400232e-02	ci left: 1.806375e-02	ci right 1.985633e-02	k: 1705	n:90000
KS ci ratio: 3.150948e-02	ci left: 1.444164e-01	ci right 1.490508e-01	k: 13205	n:90000
FGFBP1   90000 perm   19 sec   (4618 perm/sec)   p_kst 1.467222e-01   p_cons 1.894444e-02   p_joint 1.214444e-02

Joint ci ratio: 1.206270e-01	ci left: 9.819261e-03	ci right 1.108937e-02	k: 1044	n:100000
Cons ci ratio: 8.989549e-02	ci left: 1.782049e-02	ci right 1.950759e-02	k: 1865	n:100000
KS ci ratio: 2.989890e-02	ci left: 1.444826e-01	ci right 1.488779e-01	k: 14667	n:100000
FGFBP1   100000 perm   22 sec   (4482 perm/sec)   p_kst 1.466700e-01   p_cons 1.865000e-02   p_joint 1.044000e-02

Joint ci ratio: 8.186526e-02	ci left: 1.958163e-02	ci right 2.126197e-02	k: 2245	n:110000
Cons ci ratio: 8.559736e-02	ci left: 1.790764e-02	ci right 1.951788e-02	k: 2057	n:110000
KS ci ratio: 2.851660e-02	ci left: 1.445055e-01	ci right 1.486950e-01	k: 16125	n:110000
FGFBP1   110000 perm   25 sec   (4373 perm/sec)   p_kst 1.465909e-01   p_cons 1.870000e-02   p_joint 2.040909e-02

Outputting figure to mutsig2_images.part000000000065/FGFBP1.2_709_110000_0.14659_0.0187_0.020409.png
                gene_name: FGFBP1
               theta_stop: 0.086 
                    nperm: 110000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 69 percent done.
FGFR1OP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.531683e-02	ci left: 3.249540e-01	ci right 3.435426e-01	k: 3342	n:10000
KS ci ratio: 1.837348e-02	ci left: 8.122256e-01	ci right 8.273876e-01	k: 8199	n:10000
FGFR1OP   10000 perm   2 sec   (6133 perm/sec)   p_kst 8.199000e-01   p_cons 3.342000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FGFR1OP.2_1252_10000_0.8199_0.3342_1.png
                gene_name: FGFR1OP
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
FGFR1OP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.217319e-02	ci left: 7.490766e-01	ci right 7.659732e-01	k: 7576	n:10000
Cons ci ratio: 8.246439e-03	ci left: 9.535696e-01	ci right 9.615610e-01	k: 9577	n:10000
KS ci ratio: 1.071676e-01	ci left: 1.116413e-01	ci right 1.243822e-01	k: 1179	n:10000
FGFR1OP2   10000 perm   2 sec   (6475 perm/sec)   p_kst 1.179000e-01   p_cons 9.577000e-01   p_joint 7.576000e-01

Joint ci ratio: 6.901435e-02	ci left: 1.340854e-01	ci right 1.437198e-01	k: 2777	n:20000
Cons ci ratio: 5.795854e-03	ci left: 9.552824e-01	ci right 9.608834e-01	k: 19163	n:20000
KS ci ratio: 7.550851e-02	ci left: 1.142482e-01	ci right 1.232630e-01	k: 2374	n:20000
FGFR1OP2   20000 perm   4 sec   (5657 perm/sec)   p_kst 1.187000e-01   p_cons 9.581500e-01   p_joint 1.388500e-01

Outputting figure to mutsig2_images.part000000000065/FGFR1OP2.2_795_20000_0.1187_0.95815_0.13885.png
                gene_name: FGFR1OP2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 73 percent done.
FGFR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.318302e-02	ci left: 5.727616e-01	ci right 5.921903e-01	k: 5825	n:10000
Cons ci ratio: 5.275826e-02	ci left: 3.462109e-01	ci right 3.650732e-01	k: 3556	n:10000
KS ci ratio: 3.623340e-02	ci left: 5.293701e-01	ci right 5.490070e-01	k: 5392	n:10000
FGFR3   10000 perm   2 sec   (5247 perm/sec)   p_kst 5.392000e-01   p_cons 3.556000e-01   p_joint 5.825000e-01

Outputting figure to mutsig2_images.part000000000065/FGFR3.2_2644_10000_0.5392_0.3556_0.5825.png
                gene_name: FGFR3
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 75 percent done.
FGFR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.426573e-01	ci left: 6.517166e-02	ci right 7.528044e-02	k: 701	n:10000
Cons ci ratio: 7.308596e-02	ci left: 2.151691e-01	ci right 2.315924e-01	k: 2233	n:10000
KS ci ratio: 1.426573e-01	ci left: 6.517166e-02	ci right 7.528044e-02	k: 701	n:10000
FGFR4   10000 perm   2 sec   (5564 perm/sec)   p_kst 7.010000e-02   p_cons 2.233000e-01   p_joint 7.010000e-02

Joint ci ratio: 1.011864e-01	ci left: 6.625749e-02	ci right 7.336820e-02	k: 1395	n:20000
Cons ci ratio: 5.192711e-02	ci left: 2.159589e-01	ci right 2.275221e-01	k: 4434	n:20000
KS ci ratio: 1.011864e-01	ci left: 6.625749e-02	ci right 7.336820e-02	k: 1395	n:20000
FGFR4   20000 perm   4 sec   (4750 perm/sec)   p_kst 6.975000e-02   p_cons 2.217000e-01   p_joint 6.975000e-02

Joint ci ratio: 4.962121e-02	ci left: 1.679099e-01	ci right 1.764870e-01	k: 5165	n:30000
Cons ci ratio: 4.329650e-02	ci left: 2.099324e-01	ci right 2.192563e-01	k: 6437	n:30000
KS ci ratio: 8.293876e-02	ci left: 6.641864e-02	ci right 7.219844e-02	k: 2078	n:30000
FGFR4   30000 perm   7 sec   (4450 perm/sec)   p_kst 6.926667e-02   p_cons 2.145667e-01   p_joint 1.721667e-01

Outputting figure to mutsig2_images.part000000000065/FGFR4.2_2547_30000_0.069267_0.21457_0.17217.png
                gene_name: FGFR4
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 77 percent done.
FGR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.695388e-02	ci left: 5.195598e-01	ci right 5.392231e-01	k: 5294	n:10000
KS ci ratio: 2.926994e-02	ci left: 6.325134e-01	ci right 6.514038e-01	k: 6420	n:10000
FGR   10000 perm   2 sec   (6226 perm/sec)   p_kst 6.420000e-01   p_cons 5.294000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FGR.2_1634_10000_0.642_0.5294_1.png
                gene_name: FGR
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
FHL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.660225e-03	ci left: 9.594273e-01	ci right 9.668997e-01	k: 9633	n:10000
Cons ci ratio: 4.159520e-02	ci left: 4.604773e-01	ci right 4.801400e-01	k: 4703	n:10000
KS ci ratio: 6.855334e-02	ci left: 2.378802e-01	ci right 2.548678e-01	k: 2463	n:10000
FHL2   10000 perm   2 sec   (6609 perm/sec)   p_kst 2.463000e-01   p_cons 4.703000e-01   p_joint 9.633000e-01

Outputting figure to mutsig2_images.part000000000065/FHL2.2_860_10000_0.2463_0.4703_0.9633.png
                gene_name: FHL2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 81 percent done.
FHL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.448967e-02	ci left: 5.538124e-01	ci right 5.733505e-01	k: 5636	n:10000
KS ci ratio: 1.296871e-02	ci left: 8.953894e-01	ci right 9.071756e-01	k: 9014	n:10000
FHL3   10000 perm   1 sec   (6907 perm/sec)   p_kst 9.014000e-01   p_cons 5.636000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FHL3.2_863_10000_0.9014_0.5636_1.png
                gene_name: FHL3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
FIGF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.593439e-02	ci left: 4.115964e-01	ci right 4.310494e-01	k: 4213	n:10000
Cons ci ratio: 2.054571e-02	ci left: 7.763090e-01	ci right 7.925250e-01	k: 7845	n:10000
KS ci ratio: 1.045720e-01	ci left: 1.167209e-01	ci right 1.296994e-01	k: 1231	n:10000
FIGF   10000 perm   2 sec   (6484 perm/sec)   p_kst 1.231000e-01   p_cons 7.845000e-01   p_joint 4.213000e-01

Joint ci ratio: 2.377541e-02	ci left: 5.692156e-01	ci right 5.829623e-01	k: 11522	n:20000
Cons ci ratio: 1.388120e-02	ci left: 7.938828e-01	ci right 8.050300e-01	k: 15990	n:20000
KS ci ratio: 7.415097e-02	ci left: 1.180354e-01	ci right 1.271746e-01	k: 2451	n:20000
FIGF   20000 perm   4 sec   (5678 perm/sec)   p_kst 1.225500e-01   p_cons 7.995000e-01   p_joint 5.761000e-01

Outputting figure to mutsig2_images.part000000000065/FIGF.2_1093_20000_0.12255_0.7995_0.5761.png
                gene_name: FIGF
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 85 percent done.
FIZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.004477e-02	ci left: 6.203499e-01	ci right 6.393743e-01	k: 6299	n:10000
KS ci ratio: 6.565379e-02	ci left: 2.540943e-01	ci right 2.714441e-01	k: 2627	n:10000
FIZ1   10000 perm   2 sec   (6213 perm/sec)   p_kst 2.627000e-01   p_cons 6.299000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FIZ1.2_1499_10000_0.2627_0.6299_1.png
                gene_name: FIZ1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
FKBP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.479209e-02	ci left: 5.495033e-01	ci right 5.690622e-01	k: 5593	n:10000
KS ci ratio: 2.332572e-02	ci left: 7.297682e-01	ci right 7.470927e-01	k: 7385	n:10000
FKBP14   10000 perm   2 sec   (6282 perm/sec)   p_kst 7.385000e-01   p_cons 5.593000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FKBP14.2_652_10000_0.7385_0.5593_1.png
                gene_name: FKBP14
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
FKBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.188540e-01	ci left: 9.224042e-02	ci right 1.039949e-01	k: 980	n:10000
Cons ci ratio: 8.049148e-02	ci left: 1.839270e-01	ci right 1.994530e-01	k: 1916	n:10000
KS ci ratio: 1.940616e-01	ci left: 3.538572e-02	ci right 4.308567e-02	k: 391	n:10000
FKBP3   10000 perm   1 sec   (6785 perm/sec)   p_kst 3.910000e-02   p_cons 1.916000e-01   p_joint 9.800000e-02

Joint ci ratio: 8.459497e-02	ci left: 9.283400e-02	ci right 1.010836e-01	k: 1938	n:20000
Cons ci ratio: 5.655213e-02	ci left: 1.881933e-01	ci right 1.991959e-01	k: 3873	n:20000
KS ci ratio: 1.391770e-01	ci left: 3.548919e-02	ci right 4.084615e-02	k: 762	n:20000
FKBP3   20000 perm   3 sec   (5832 perm/sec)   p_kst 3.810000e-02   p_cons 1.936500e-01   p_joint 9.690000e-02

Joint ci ratio: 7.149998e-02	ci left: 8.780130e-02	ci right 9.434481e-02	k: 2731	n:30000
Cons ci ratio: 4.604220e-02	ci left: 1.901002e-01	ci right 1.990924e-01	k: 5837	n:30000
KS ci ratio: 1.130492e-01	ci left: 3.635095e-02	ci right 4.073899e-02	k: 1155	n:30000
FKBP3   30000 perm   5 sec   (5479 perm/sec)   p_kst 3.850000e-02   p_cons 1.945667e-01   p_joint 9.103333e-02

Joint ci ratio: 5.881577e-02	ci left: 9.700265e-02	ci right 1.029056e-01	k: 3997	n:40000
Cons ci ratio: 3.994709e-02	ci left: 1.901347e-01	ci right 1.979098e-01	k: 7760	n:40000
KS ci ratio: 9.761879e-02	ci left: 3.685528e-02	ci right 4.066205e-02	k: 1549	n:40000
FKBP3   40000 perm   8 sec   (5260 perm/sec)   p_kst 3.872500e-02   p_cons 1.940000e-01   p_joint 9.992500e-02

Outputting figure to mutsig2_images.part000000000065/FKBP3.2_703_40000_0.038725_0.194_0.099925.png
                gene_name: FKBP3
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.100 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 92 percent done.
FKBP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.164863e-03	ci left: 9.544052e-01	ci right 9.623250e-01	k: 9585	n:10000
Cons ci ratio: 1.690602e-02	ci left: 8.359236e-01	ci right 8.502760e-01	k: 8432	n:10000
KS ci ratio: 2.520369e-02	ci left: 6.984744e-01	ci right 7.164046e-01	k: 7075	n:10000
FKBP5   10000 perm   2 sec   (5976 perm/sec)   p_kst 7.075000e-01   p_cons 8.432000e-01   p_joint 9.585000e-01

Outputting figure to mutsig2_images.part000000000065/FKBP5.2_1472_10000_0.7075_0.8432_0.9585.png
                gene_name: FKBP5
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 94 percent done.
FKBP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.474272e-02	ci left: 5.502047e-01	ci right 5.697603e-01	k: 5600	n:10000
KS ci ratio: 3.033536e-02	ci left: 6.158280e-01	ci right 6.348989e-01	k: 6254	n:10000
FKBP8   10000 perm   2 sec   (6468 perm/sec)   p_kst 6.254000e-01   p_cons 5.600000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FKBP8.2_1274_10000_0.6254_0.56_1.png
                gene_name: FKBP8
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
FKSG83
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.862795e-02	ci left: 8.080607e-01	ci right 8.233550e-01	k: 8158	n:10000
Cons ci ratio: 1.138285e-02	ci left: 9.168793e-01	ci right 9.274733e-01	k: 9223	n:10000
KS ci ratio: 5.511858e-02	ci left: 3.265426e-01	ci right 3.451531e-01	k: 3358	n:10000
FKSG83   10000 perm   2 sec   (6499 perm/sec)   p_kst 3.358000e-01   p_cons 9.223000e-01   p_joint 8.158000e-01

Outputting figure to mutsig2_images.part000000000065/FKSG83.2_574_10000_0.3358_0.9223_0.8158.png
                gene_name: FKSG83
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 98 percent done.
FLJ44635
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.835916e-02	ci left: 6.469974e-01	ci right 6.657114e-01	k: 6564	n:10000
KS ci ratio: 3.384225e-02	ci left: 5.631348e-01	ci right 5.826227e-01	k: 5729	n:10000
FLJ44635   10000 perm   2 sec   (6478 perm/sec)   p_kst 5.729000e-01   p_cons 6.564000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000065/FLJ44635.2_431_10000_0.5729_0.6564_1.png
                gene_name: FLJ44635
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000065
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 65 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1705>
Subject: Job 9893942: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1705>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000066> was used as the working directory.
Started at Sat Oct  6 00:08:56 2012
Results reported at Sat Oct  6 00:35:25 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000066.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000066.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 66  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000066.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1630.08 sec.
    Max Memory :      3510 MB
    Max Swap   :      5936 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
66
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 66
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 66: processing genes 5861 - 5950
Calculating significance of each gene.
Using projection method.
5861	FLT1	1.858663e-01
5862	FLT3	8.765414e-01
5863	FLT3LG	5.190734e-01
5864	FLT4	7.894037e-01
5865	FLVCR1	7.596654e-01
5866	FLVCR2	4.476353e-01
5867	FLYWCH1	1
5868	FLYWCH2	1
5869	FMN1	5.116942e-01
5870	FMN2	3.741824e-01
5871	FMNL1	4.707381e-01
5872	FMNL2	8.279979e-01
5873	FMNL3	7.426511e-01
5874	FMO1	2.868415e-01
5875	FMO2	5.997708e-01
5876	FMO3	2.066486e-02
5877	FMO4	4.446871e-01
5878	FMO5	1.479691e-01
5879	FMOD	5.863510e-01
5880	FMR1	3.643267e-01
5881	FMR1NB	3.947927e-03
5882	FN1	9.816775e-03
5883	FN3K	1
5884	FN3KRP	2.815940e-01
5885	FNBP1	2.181704e-01
5886	FNBP1L	7.891469e-01
5887	FNBP4	6.425442e-01
5888	FNDC1	1.590032e-02
5889	FNDC3A	1.622088e-01
5890	FNDC3B	2.657915e-01
5891	FNDC4	5.837925e-01
5892	FNDC5	1
5893	FNDC7	8.033837e-01
5894	FNDC8	8.319417e-01
5895	FNIP1	7.485348e-01
5896	FNIP2	7.162160e-01
5897	FNTA	7.213442e-01
5898	FNTB	9.304249e-01
5899	FOLH1	7.272124e-01
5900	FOLH1B	3.478121e-02
5901	FOLR1	9.993136e-03
5902	FOLR2	1
5903	FOLR3	8.742859e-02
5904	FOLR4	6.591516e-01
5905	FOS	9.198774e-01
5906	FOSB	7.264499e-01
5907	FOSL1	1
5908	FOSL2	6.240021e-01
5909	FOXA1	8.805642e-01
5910	FOXA2	7.500770e-01
5911	FOXA3	7.701794e-01
5912	FOXB1	1
5913	FOXB2	1
5914	FOXC1	7.051323e-01
5915	FOXC2	1
5916	FOXD1	1
5917	FOXD2	1
5918	FOXD3	1
5919	FOXD4	6.739963e-01
5920	FOXD4L1	6.302579e-01
5921	FOXD4L3	1
5922	FOXE1	1
5923	FOXE3	1
5924	FOXF1	9.148839e-01
5925	FOXF2	4.482524e-01
5926	FOXG1	1.315839e-01
5927	FOXH1	6.266052e-01
5928	FOXI1	5.774675e-02
5929	FOXJ1	1
5930	FOXJ2	7.907583e-01
5931	FOXJ3	4.404418e-01
5932	FOXK1	1.268186e-01
5933	FOXK2	7.169664e-01
5934	FOXL1	4.062653e-01
5935	FOXL2	1
5936	FOXM1	4.600075e-01
5937	FOXN1	6.736483e-01
5938	FOXN2	3.669332e-01
5939	FOXN3	4.649955e-01
5940	FOXN4	5.518473e-01
5941	FOXO1	9.055588e-01
5942	FOXO3	9.388404e-01
5943	FOXO4	2.969306e-01
5944	FOXP1	9.736042e-02
5945	FOXP2	3.189351e-01
5946	FOXP3	4.766527e-01
5947	FOXP4	8.723530e-01
5948	FOXR1	5.272189e-01
5949	FOXR2	6.735752e-01
5950	FOXRED1	9.360043e-01
Done

Running MutSig 2:
Scatter job 66: processing genes 5861 - 5950
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FNDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.854123e-02	ci left: 4.985503e-01	ci right 5.182448e-01	k: 5084	n:10000
KS ci ratio: 2.520369e-02	ci left: 6.984744e-01	ci right 7.164046e-01	k: 7075	n:10000
FNDC1   10000 perm   3 sec   (3254 perm/sec)   p_kst 7.075000e-01   p_cons 5.084000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FNDC1.23_5777_10000_0.7075_0.5084_1.png
                gene_name: FNDC1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
FN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.354428e-02	ci left: 8.871865e-01	ci right 8.993833e-01	k: 8934	n:10000
KS ci ratio: 1.624279e-02	ci left: 8.464166e-01	ci right 8.603769e-01	k: 8535	n:10000
FN1   10000 perm   4 sec   (2784 perm/sec)   p_kst 8.535000e-01   p_cons 8.934000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FN1.21_7651_10000_0.8535_0.8934_1.png
                gene_name: FN1
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
FLT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.876252e-02	ci left: 6.405589e-01	ci right 6.593536e-01	k: 6500	n:10000
KS ci ratio: 1.326553e-02	ci left: 8.911840e-01	ci right 9.031835e-01	k: 8973	n:10000
FLT1   10000 perm   2 sec   (4268 perm/sec)   p_kst 8.973000e-01   p_cons 6.500000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FLT1.12_4400_10000_0.8973_0.65_1.png
                gene_name: FLT1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
FMO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.046834e-02	ci left: 9.284392e-01	ci right 9.383065e-01	k: 9335	n:10000
Cons ci ratio: 6.313950e-03	ci left: 9.715363e-01	ci right 9.777830e-01	k: 9748	n:10000
KS ci ratio: 2.419615e-02	ci left: 7.152252e-01	ci right 7.328441e-01	k: 7241	n:10000
FMO3   10000 perm   2 sec   (4584 perm/sec)   p_kst 7.241000e-01   p_cons 9.748000e-01   p_joint 9.335000e-01

Outputting figure to mutsig2_images.part000000000066/FMO3.10_1631_10000_0.7241_0.9748_0.9335.png
                gene_name: FMO3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 7 percent done.
FNDC3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.448267e-02	ci left: 2.087570e-01	ci right 2.250082e-01	k: 2168	n:10000
Cons ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
KS ci ratio: 7.757470e-02	ci left: 1.954493e-01	ci right 2.113238e-01	k: 2033	n:10000
FNDC3B   10000 perm   2 sec   (4610 perm/sec)   p_kst 2.033000e-01   p_cons 1.336000e-01   p_joint 2.168000e-01

Outputting figure to mutsig2_images.part000000000066/FNDC3B.9_3715_10000_0.2033_0.1336_0.2168.png
                gene_name: FNDC3B
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 9 percent done.
FMN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.495467e-02	ci left: 5.471986e-01	ci right 5.667681e-01	k: 5570	n:10000
Cons ci ratio: 2.693242e-02	ci left: 6.700507e-01	ci right 6.884448e-01	k: 6793	n:10000
KS ci ratio: 5.376300e-02	ci left: 3.376659e-01	ci right 3.564232e-01	k: 3470	n:10000
FMN1   10000 perm   2 sec   (4508 perm/sec)   p_kst 3.470000e-01   p_cons 6.793000e-01   p_joint 5.570000e-01

Outputting figure to mutsig2_images.part000000000066/FMN1.8_3659_10000_0.347_0.6793_0.557.png
                gene_name: FMN1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 11 percent done.
FMN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.328380e-01	ci left: 7.475563e-02	ci right 8.549047e-02	k: 800	n:10000
Cons ci ratio: 7.876742e-02	ci left: 1.906225e-01	ci right 2.063536e-01	k: 1984	n:10000
KS ci ratio: 1.175954e-01	ci left: 9.408985e-02	ci right 1.059443e-01	k: 999	n:10000
FMN2   10000 perm   2 sec   (4318 perm/sec)   p_kst 9.990000e-02   p_cons 1.984000e-01   p_joint 8.000000e-02

Joint ci ratio: 7.377426e-02	ci left: 1.191178e-01	ci right 1.282919e-01	k: 2473	n:20000
Cons ci ratio: 5.641671e-02	ci left: 1.889352e-01	ci right 1.999538e-01	k: 3888	n:20000
KS ci ratio: 8.151112e-02	ci left: 9.940942e-02	ci right 1.079062e-01	k: 2072	n:20000
FMN2   20000 perm   5 sec   (3865 perm/sec)   p_kst 1.036000e-01   p_cons 1.944000e-01   p_joint 1.236500e-01

Outputting figure to mutsig2_images.part000000000066/FMN2.7_5241_20000_0.1036_0.1944_0.12365.png
                gene_name: FMN2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 13 percent done.
FNDC3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.379167e-02	ci left: 8.836011e-01	ci right 8.959708e-01	k: 8899	n:10000
Cons ci ratio: 2.538035e-02	ci left: 6.955495e-01	ci right 7.135312e-01	k: 7046	n:10000
KS ci ratio: 4.542946e-02	ci left: 4.169786e-01	ci right 4.364641e-01	k: 4267	n:10000
FNDC3A   10000 perm   2 sec   (4594 perm/sec)   p_kst 4.267000e-01   p_cons 7.046000e-01   p_joint 8.899000e-01

Outputting figure to mutsig2_images.part000000000066/FNDC3A.7_3708_10000_0.4267_0.7046_0.8899.png
                gene_name: FNDC3A
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 15 percent done.
FOLH1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.456744e-02	ci left: 4.263503e-01	ci right 4.458869e-01	k: 4361	n:10000
Cons ci ratio: 3.331279e-02	ci left: 5.708560e-01	ci right 5.902970e-01	k: 5806	n:10000
KS ci ratio: 5.779280e-02	ci left: 3.059006e-01	ci right 3.242072e-01	k: 3150	n:10000
FOLH1B   10000 perm   2 sec   (5904 perm/sec)   p_kst 3.150000e-01   p_cons 5.806000e-01   p_joint 4.361000e-01

Outputting figure to mutsig2_images.part000000000066/FOLH1B.7_1377_10000_0.315_0.5806_0.4361.png
                gene_name: FOLH1B
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 16 percent done.
FOXG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.043307e-01	ci left: 1.172096e-01	ci right 1.302105e-01	k: 1236	n:10000
Cons ci ratio: 1.801579e-01	ci left: 4.111563e-02	ci right 4.935192e-02	k: 451	n:10000
KS ci ratio: 6.026571e-02	ci left: 2.882526e-01	ci right 3.062657e-01	k: 2972	n:10000
FOXG1   10000 perm   2 sec   (5454 perm/sec)   p_kst 2.972000e-01   p_cons 4.510000e-02   p_joint 1.236000e-01

Joint ci ratio: 7.689281e-02	ci left: 1.105607e-01	ci right 1.194516e-01	k: 2299	n:20000
Cons ci ratio: 1.245349e-01	ci left: 4.425346e-02	ci right 5.017908e-02	k: 943	n:20000
KS ci ratio: 4.234573e-02	ci left: 2.935541e-01	ci right 3.063042e-01	k: 5998	n:20000
FOXG1   20000 perm   4 sec   (4714 perm/sec)   p_kst 2.999000e-01   p_cons 4.715000e-02   p_joint 1.149500e-01

Joint ci ratio: 6.120046e-02	ci left: 1.166062e-01	ci right 1.240009e-01	k: 3608	n:30000
Cons ci ratio: 9.966803e-02	ci left: 4.658437e-02	ci right 5.150343e-02	k: 1470	n:30000
KS ci ratio: 3.481960e-02	ci left: 2.917994e-01	ci right 3.021733e-01	k: 8909	n:30000
FOXG1   30000 perm   7 sec   (4591 perm/sec)   p_kst 2.969667e-01   p_cons 4.900000e-02   p_joint 1.202667e-01

Outputting figure to mutsig2_images.part000000000066/FOXG1.7_1474_30000_0.29697_0.049_0.12027.png
                gene_name: FOXG1
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 18 percent done.
FMNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.410837e-02	ci left: 4.314365e-01	ci right 4.509978e-01	k: 4412	n:10000
Cons ci ratio: 6.371172e-02	ci left: 2.657701e-01	ci right 2.833614e-01	k: 2745	n:10000
KS ci ratio: 4.390326e-02	ci left: 4.337306e-01	ci right 4.533023e-01	k: 4435	n:10000
FMNL1   10000 perm   2 sec   (4507 perm/sec)   p_kst 4.435000e-01   p_cons 2.745000e-01   p_joint 4.412000e-01

Outputting figure to mutsig2_images.part000000000066/FMNL1.6_3407_10000_0.4435_0.2745_0.4412.png
                gene_name: FMNL1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 20 percent done.
FMNL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.199590e-02	ci left: 3.528704e-01	ci right 3.718099e-01	k: 3623	n:10000
Cons ci ratio: 4.188850e-02	ci left: 4.569827e-01	ci right 4.766367e-01	k: 4668	n:10000
KS ci ratio: 6.396856e-02	ci left: 2.641865e-01	ci right 2.817460e-01	k: 2729	n:10000
FMNL3   10000 perm   2 sec   (4747 perm/sec)   p_kst 2.729000e-01   p_cons 4.668000e-01   p_joint 3.623000e-01

Outputting figure to mutsig2_images.part000000000066/FMNL3.6_3188_10000_0.2729_0.4668_0.3623.png
                gene_name: FMNL3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 22 percent done.
FMO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.181361e-02	ci left: 9.112147e-01	ci right 9.221412e-01	k: 9168	n:10000
Cons ci ratio: 3.548179e-02	ci left: 5.397853e-01	ci right 5.593858e-01	k: 5496	n:10000
KS ci ratio: 1.037541e-02	ci left: 9.295765e-01	ci right 9.393685e-01	k: 9346	n:10000
FMO4   10000 perm   2 sec   (4782 perm/sec)   p_kst 9.346000e-01   p_cons 5.496000e-01   p_joint 9.168000e-01

Outputting figure to mutsig2_images.part000000000066/FMO4.6_1709_10000_0.9346_0.5496_0.9168.png
                gene_name: FMO4
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 24 percent done.
FMR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.899873e-02	ci left: 8.019682e-01	ci right 8.174510e-01	k: 8098	n:10000
Cons ci ratio: 1.952111e-02	ci left: 7.933421e-01	ci right 8.090821e-01	k: 8013	n:10000
KS ci ratio: 3.315575e-02	ci left: 5.731628e-01	ci right 5.925889e-01	k: 5829	n:10000
FMR1   10000 perm   2 sec   (5726 perm/sec)   p_kst 5.829000e-01   p_cons 8.013000e-01   p_joint 8.098000e-01

Outputting figure to mutsig2_images.part000000000066/FMR1.6_1967_10000_0.5829_0.8013_0.8098.png
                gene_name: FMR1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 25 percent done.
FMR1NB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.050319e-02	ci left: 7.770183e-01	ci right 7.932153e-01	k: 7852	n:10000
KS ci ratio: 1.742078e-02	ci left: 8.276794e-01	ci right 8.423249e-01	k: 8351	n:10000
FMR1NB   10000 perm   2 sec   (5632 perm/sec)   p_kst 8.351000e-01   p_cons 7.852000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FMR1NB.6_788_10000_0.8351_0.7852_1.png
                gene_name: FMR1NB
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
FNBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.381978e-02	ci left: 8.831915e-01	ci right 8.955806e-01	k: 8895	n:10000
KS ci ratio: 1.837970e-02	ci left: 8.121240e-01	ci right 8.272893e-01	k: 8198	n:10000
FNBP1   10000 perm   2 sec   (4704 perm/sec)   p_kst 8.198000e-01   p_cons 8.895000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FNBP1.6_1922_10000_0.8198_0.8895_1.png
                gene_name: FNBP1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
FOXK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.580770e-02	ci left: 6.884913e-01	ci right 7.065935e-01	k: 6976	n:10000
Cons ci ratio: 3.580541e-02	ci left: 5.352782e-01	ci right 5.548955e-01	k: 5451	n:10000
KS ci ratio: 4.007393e-02	ci left: 4.790570e-01	ci right 4.987494e-01	k: 4889	n:10000
FOXK1   10000 perm   2 sec   (5342 perm/sec)   p_kst 4.889000e-01   p_cons 5.451000e-01   p_joint 6.976000e-01

Outputting figure to mutsig2_images.part000000000066/FOXK1.6_2238_10000_0.4889_0.5451_0.6976.png
                gene_name: FOXK1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 31 percent done.
FOXP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.747717e-02	ci left: 1.323733e-01	ci right 1.460376e-01	k: 1391	n:10000
Cons ci ratio: 9.338490e-02	ci left: 1.427601e-01	ci right 1.568446e-01	k: 1497	n:10000
KS ci ratio: 8.265884e-02	ci left: 1.759564e-01	ci right 1.912283e-01	k: 1835	n:10000
FOXP1   10000 perm   2 sec   (5446 perm/sec)   p_kst 1.835000e-01   p_cons 1.497000e-01   p_joint 1.391000e-01

Outputting figure to mutsig2_images.part000000000066/FOXP1.6_2267_10000_0.1835_0.1497_0.1391.png
                gene_name: FOXP1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.15 

Current progress: 33 percent done.
FOXP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.915936e-02	ci left: 2.959840e-01	ci right 3.141297e-01	k: 3050	n:10000
Cons ci ratio: 5.539147e-02	ci left: 3.243584e-01	ci right 3.429386e-01	k: 3336	n:10000
KS ci ratio: 8.023269e-02	ci left: 1.849114e-01	ci right 2.004680e-01	k: 1926	n:10000
FOXP2   10000 perm   2 sec   (4988 perm/sec)   p_kst 1.926000e-01   p_cons 3.336000e-01   p_joint 3.050000e-01

Outputting figure to mutsig2_images.part000000000066/FOXP2.6_2379_10000_0.1926_0.3336_0.305.png
                gene_name: FOXP2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 35 percent done.
FLT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.952407e-02	ci left: 2.934065e-01	ci right 3.115087e-01	k: 3024	n:10000
Cons ci ratio: 1.091607e-02	ci left: 9.228612e-01	ci right 9.330878e-01	k: 9281	n:10000
KS ci ratio: 8.869635e-02	ci left: 1.561040e-01	ci right 1.706926e-01	k: 1633	n:10000
FLT3   10000 perm   2 sec   (4614 perm/sec)   p_kst 1.633000e-01   p_cons 9.281000e-01   p_joint 3.024000e-01

Outputting figure to mutsig2_images.part000000000066/FLT3.5_3078_10000_0.1633_0.9281_0.3024.png
                gene_name: FLT3
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 36 percent done.
FLT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.752686e-02	ci left: 1.956464e-01	ci right 2.115267e-01	k: 2035	n:10000
Cons ci ratio: 5.436136e-02	ci left: 3.326995e-01	ci right 3.513926e-01	k: 3420	n:10000
KS ci ratio: 1.027723e-01	ci left: 1.204354e-01	ci right 1.335827e-01	k: 1269	n:10000
FLT4   10000 perm   2 sec   (4335 perm/sec)   p_kst 1.269000e-01   p_cons 3.420000e-01   p_joint 2.035000e-01

Joint ci ratio: 4.944033e-02	ci left: 2.332019e-01	ci right 2.450740e-01	k: 4782	n:20000
Cons ci ratio: 4.005163e-02	ci left: 3.173160e-01	ci right 3.303352e-01	k: 6476	n:20000
KS ci ratio: 7.135872e-02	ci left: 1.264021e-01	ci right 1.358055e-01	k: 2621	n:20000
FLT4   20000 perm   5 sec   (3969 perm/sec)   p_kst 1.310500e-01   p_cons 3.238000e-01   p_joint 2.391000e-01

Outputting figure to mutsig2_images.part000000000066/FLT4.5_4220_20000_0.13105_0.3238_0.2391.png
                gene_name: FLT4
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 38 percent done.
FNBP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.455838e-02	ci left: 4.264501e-01	ci right 4.459871e-01	k: 4362	n:10000
Cons ci ratio: 1.002557e-01	ci left: 1.259128e-01	ci right 1.393020e-01	k: 1325	n:10000
KS ci ratio: 2.370020e-02	ci left: 7.235052e-01	ci right 7.409593e-01	k: 7323	n:10000
FNBP4   10000 perm   2 sec   (5691 perm/sec)   p_kst 7.323000e-01   p_cons 1.325000e-01   p_joint 4.362000e-01

Joint ci ratio: 3.190413e-02	ci left: 4.232241e-01	ci right 4.369962e-01	k: 8602	n:20000
Cons ci ratio: 7.244374e-02	ci left: 1.230546e-01	ci right 1.323539e-01	k: 2553	n:20000
KS ci ratio: 1.739457e-02	ci left: 7.111538e-01	ci right 7.236829e-01	k: 14349	n:20000
FNBP4   20000 perm   4 sec   (4915 perm/sec)   p_kst 7.174500e-01   p_cons 1.276500e-01   p_joint 4.301000e-01

Outputting figure to mutsig2_images.part000000000066/FNBP4.5_3122_20000_0.71745_0.12765_0.4301.png
                gene_name: FNBP4
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 40 percent done.
FOLR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.615832e-02	ci left: 8.477417e-01	ci right 8.616509e-01	k: 8548	n:10000
Cons ci ratio: 3.200987e-02	ci left: 5.902198e-01	ci right 6.095220e-01	k: 5999	n:10000
KS ci ratio: 2.570378e-02	ci left: 6.902052e-01	ci right 7.082786e-01	k: 6993	n:10000
FOLR1   10000 perm   2 sec   (6186 perm/sec)   p_kst 6.993000e-01   p_cons 5.999000e-01   p_joint 8.548000e-01

Outputting figure to mutsig2_images.part000000000066/FOLR1.5_790_10000_0.6993_0.5999_0.8548.png
                gene_name: FOLR1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 42 percent done.
FOXI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.111895e-02	ci left: 9.202817e-01	ci right 9.306688e-01	k: 9256	n:10000
KS ci ratio: 2.069749e-02	ci left: 7.737760e-01	ci right 7.900594e-01	k: 7820	n:10000
FOXI1   10000 perm   2 sec   (5945 perm/sec)   p_kst 7.820000e-01   p_cons 9.256000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FOXI1.5_1145_10000_0.782_0.9256_1.png
                gene_name: FOXI1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
FMNL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.554127e-02	ci left: 3.231670e-01	ci right 3.417307e-01	k: 3324	n:10000
Cons ci ratio: 5.011454e-02	ci left: 3.699753e-01	ci right 3.890950e-01	k: 3795	n:10000
KS ci ratio: 7.871795e-02	ci left: 1.908194e-01	ci right 2.065565e-01	k: 1986	n:10000
FMNL2   10000 perm   2 sec   (4875 perm/sec)   p_kst 1.986000e-01   p_cons 3.795000e-01   p_joint 3.324000e-01

Outputting figure to mutsig2_images.part000000000066/FMNL2.4_3383_10000_0.1986_0.3795_0.3324.png
                gene_name: FMNL2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 45 percent done.
FMO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.784578e-02	ci left: 5.076523e-01	ci right 5.273375e-01	k: 5175	n:10000
Cons ci ratio: 4.549450e-02	ci left: 4.162808e-01	ci right 4.357623e-01	k: 4260	n:10000
KS ci ratio: 4.836263e-02	ci left: 3.867942e-01	ci right 4.060662e-01	k: 3964	n:10000
FMO2   10000 perm   2 sec   (5991 perm/sec)   p_kst 3.964000e-01   p_cons 4.260000e-01   p_joint 5.175000e-01

Outputting figure to mutsig2_images.part000000000066/FMO2.4_1448_10000_0.3964_0.426_0.5175.png
                gene_name: FMO2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 47 percent done.
FNIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.355196e-02	ci left: 1.728091e-01	ci right 1.879776e-01	k: 1803	n:10000
Cons ci ratio: 1.063518e-01	ci left: 1.132038e-01	ci right 1.260187e-01	k: 1195	n:10000
KS ci ratio: 5.554127e-02	ci left: 3.231670e-01	ci right 3.417307e-01	k: 3324	n:10000
FNIP1   10000 perm   2 sec   (4190 perm/sec)   p_kst 3.324000e-01   p_cons 1.195000e-01   p_joint 1.803000e-01

Joint ci ratio: 5.190455e-02	ci left: 2.161074e-01	ci right 2.276735e-01	k: 4437	n:20000
Cons ci ratio: 7.559884e-02	ci left: 1.140023e-01	ci right 1.230090e-01	k: 2369	n:20000
KS ci ratio: 3.921176e-02	ci left: 3.266173e-01	ci right 3.397312e-01	k: 6663	n:20000
FNIP1   20000 perm   5 sec   (3874 perm/sec)   p_kst 3.331500e-01   p_cons 1.184500e-01   p_joint 2.218500e-01

Outputting figure to mutsig2_images.part000000000066/FNIP1.4_3573_20000_0.33315_0.11845_0.22185.png
                gene_name: FNIP1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 49 percent done.
FNIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.785795e-02	ci left: 6.550482e-01	ci right 6.736560e-01	k: 6644	n:10000
Cons ci ratio: 4.729818e-02	ci left: 3.974490e-01	ci right 4.168051e-01	k: 4071	n:10000
KS ci ratio: 4.686016e-02	ci left: 4.019315e-01	ci right 4.213200e-01	k: 4116	n:10000
FNIP2   10000 perm   2 sec   (4013 perm/sec)   p_kst 4.116000e-01   p_cons 4.071000e-01   p_joint 6.644000e-01

Outputting figure to mutsig2_images.part000000000066/FNIP2.4_3413_10000_0.4116_0.4071_0.6644.png
                gene_name: FNIP2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 51 percent done.
FOXM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.975980e-02	ci left: 7.893861e-01	ci right 8.052403e-01	k: 7974	n:10000
Cons ci ratio: 3.095449e-03	ci left: 9.921711e-01	ci right 9.953309e-01	k: 9939	n:10000
KS ci ratio: 3.171733e-02	ci left: 5.946365e-01	ci right 6.139027e-01	k: 6043	n:10000
FOXM1   10000 perm   2 sec   (5226 perm/sec)   p_kst 6.043000e-01   p_cons 9.939000e-01   p_joint 7.974000e-01

Outputting figure to mutsig2_images.part000000000066/FOXM1.4_2442_10000_0.6043_0.9939_0.7974.png
                gene_name: FOXM1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 53 percent done.
FOXN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.301551e-01	ci left: 1.160595e-02	ci right 1.628351e-02	k: 138	n:10000
Cons ci ratio: 2.159387e-01	ci left: 2.844783e-02	ci right 3.542834e-02	k: 318	n:10000
KS ci ratio: 1.146865e-01	ci left: 9.857012e-02	ci right 1.106613e-01	k: 1045	n:10000
FOXN3   10000 perm   2 sec   (5343 perm/sec)   p_kst 1.045000e-01   p_cons 3.180000e-02   p_joint 1.380000e-02

Joint ci ratio: 1.915958e-01	ci left: 1.853343e-02	ci right 2.250769e-02	k: 409	n:20000
Cons ci ratio: 1.539460e-01	ci left: 2.897822e-02	ci right 3.385926e-02	k: 627	n:20000
KS ci ratio: 8.366637e-02	ci left: 9.474715e-02	ci right 1.030699e-01	k: 1977	n:20000
FOXN3   20000 perm   4 sec   (4743 perm/sec)   p_kst 9.885000e-02   p_cons 3.135000e-02   p_joint 2.045000e-02

Joint ci ratio: 1.241412e-01	ci left: 3.016648e-02	ci right 3.419145e-02	k: 964	n:30000
Cons ci ratio: 1.292087e-01	ci left: 2.784031e-02	ci right 3.171813e-02	k: 892	n:30000
KS ci ratio: 6.821175e-02	ci left: 9.577396e-02	ci right 1.025706e-01	k: 2974	n:30000
FOXN3   30000 perm   7 sec   (4575 perm/sec)   p_kst 9.913333e-02   p_cons 2.973333e-02   p_joint 3.213333e-02

Joint ci ratio: 1.105032e-01	ci left: 2.881216e-02	ci right 3.220645e-02	k: 1219	n:40000
Cons ci ratio: 1.019386e-01	ci left: 3.382985e-02	ci right 3.748796e-02	k: 1425	n:40000
KS ci ratio: 5.858809e-02	ci left: 9.769347e-02	ci right 1.036146e-01	k: 4025	n:40000
FOXN3   40000 perm   9 sec   (4468 perm/sec)   p_kst 1.006250e-01   p_cons 3.562500e-02   p_joint 3.047500e-02

Joint ci ratio: 1.115081e-01	ci left: 2.277345e-02	ci right 2.548219e-02	k: 1205	n:50000
Cons ci ratio: 9.534628e-02	ci left: 3.113874e-02	ci right 3.427582e-02	k: 1634	n:50000
KS ci ratio: 5.236529e-02	ci left: 9.813480e-02	ci right 1.034316e-01	k: 5038	n:50000
FOXN3   50000 perm   11 sec   (4387 perm/sec)   p_kst 1.007600e-01   p_cons 3.268000e-02   p_joint 2.410000e-02

Joint ci ratio: 1.138262e-01	ci left: 1.827894e-02	ci right 2.050123e-02	k: 1162	n:60000
Cons ci ratio: 8.257456e-02	ci left: 3.470322e-02	ci right 3.770853e-02	k: 2171	n:60000
KS ci ratio: 4.762695e-02	ci left: 9.902865e-02	ci right 1.038766e-01	k: 6086	n:60000
FOXN3   60000 perm   14 sec   (4332 perm/sec)   p_kst 1.014333e-01   p_cons 3.618333e-02   p_joint 1.936667e-02

Joint ci ratio: 1.067480e-01	ci left: 1.789017e-02	ci right 1.992142e-02	k: 1322	n:70000
Cons ci ratio: 8.435154e-02	ci left: 2.866470e-02	ci right 3.120303e-02	k: 2094	n:70000
KS ci ratio: 4.426941e-02	ci left: 9.849430e-02	ci right 1.029674e-01	k: 7050	n:70000
FOXN3   70000 perm   16 sec   (4280 perm/sec)   p_kst 1.007143e-01   p_cons 2.991429e-02   p_joint 1.888571e-02

Joint ci ratio: 9.145339e-02	ci left: 2.142232e-02	ci right 2.348751e-02	k: 1795	n:80000
Cons ci ratio: 7.863808e-02	ci left: 2.893908e-02	ci right 3.132016e-02	k: 2409	n:80000
KS ci ratio: 4.134550e-02	ci left: 9.892018e-02	ci right 1.031088e-01	k: 8080	n:80000
FOXN3   80000 perm   19 sec   (4223 perm/sec)   p_kst 1.010000e-01   p_cons 3.011250e-02   p_joint 2.243750e-02

Outputting figure to mutsig2_images.part000000000066/FOXN3.4_1497_80000_0.101_0.030113_0.022437.png
                gene_name: FOXN3
               theta_stop: 0.091 
                    nperm: 80000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 55 percent done.
FOXO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.042473e-02	ci left: 2.871625e-01	ci right 3.051564e-01	k: 2961	n:10000
Cons ci ratio: 3.475682e-02	ci left: 5.500043e-01	ci right 5.695609e-01	k: 5598	n:10000
KS ci ratio: 7.724115e-02	ci left: 1.968288e-01	ci right 2.127436e-01	k: 2047	n:10000
FOXO4   10000 perm   2 sec   (6378 perm/sec)   p_kst 2.047000e-01   p_cons 5.598000e-01   p_joint 2.961000e-01

Outputting figure to mutsig2_images.part000000000066/FOXO4.4_1530_10000_0.2047_0.5598_0.2961.png
                gene_name: FOXO4
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 56 percent done.
FLVCR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.067374e-02	ci left: 1.832380e-01	ci right 1.987424e-01	k: 1909	n:10000
KS ci ratio: 2.109753e-02	ci left: 7.670911e-01	ci right 7.835482e-01	k: 7754	n:10000
FLVCR2   10000 perm   2 sec   (5991 perm/sec)   p_kst 7.754000e-01   p_cons 1.909000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FLVCR2.3_1621_10000_0.7754_0.1909_1.png
                gene_name: FLVCR2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
FMO5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.619830e-02	ci left: 3.180054e-01	ci right 3.364953e-01	k: 3272	n:10000
Cons ci ratio: 8.627786e-02	ci left: 1.636672e-01	ci right 1.785250e-01	k: 1710	n:10000
KS ci ratio: 5.274675e-02	ci left: 3.463103e-01	ci right 3.651738e-01	k: 3557	n:10000
FMO5   10000 perm   2 sec   (5827 perm/sec)   p_kst 3.557000e-01   p_cons 1.710000e-01   p_joint 3.272000e-01

Outputting figure to mutsig2_images.part000000000066/FMO5.3_1777_10000_0.3557_0.171_0.3272.png
                gene_name: FMO5
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 60 percent done.
FOLH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.466975e-02	ci left: 8.706072e-01	ci right 8.835722e-01	k: 8772	n:10000
KS ci ratio: 1.705912e-02	ci left: 8.334802e-01	ci right 8.479208e-01	k: 8408	n:10000
FOLH1   10000 perm   2 sec   (4282 perm/sec)   p_kst 8.408000e-01   p_cons 8.772000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FOLH1.3_2329_10000_0.8408_0.8772_1.png
                gene_name: FOLH1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
FOLR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.514666e-02	ci left: 2.057986e-01	ci right 2.219684e-01	k: 2138	n:10000
Cons ci ratio: 6.735644e-02	ci left: 2.444035e-01	ci right 2.615407e-01	k: 2529	n:10000
KS ci ratio: 9.386443e-02	ci left: 1.414855e-01	ci right 1.555199e-01	k: 1484	n:10000
FOLR3   10000 perm   2 sec   (5965 perm/sec)   p_kst 1.484000e-01   p_cons 2.529000e-01   p_joint 2.138000e-01

Outputting figure to mutsig2_images.part000000000066/FOLR3.3_752_10000_0.1484_0.2529_0.2138.png
                gene_name: FOLR3
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 64 percent done.
FOXD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.818337e-02	ci left: 6.498149e-01	ci right 6.684923e-01	k: 6592	n:10000
KS ci ratio: 6.515890e-03	ci left: 9.698435e-01	ci right 9.762769e-01	k: 9732	n:10000
FOXD4   10000 perm   2 sec   (5329 perm/sec)   p_kst 9.732000e-01   p_cons 6.592000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FOXD4.3_1324_10000_0.9732_0.6592_1.png
                gene_name: FOXD4
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
FOXD4L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.339117e-02	ci left: 4.395167e-01	ci right 4.591129e-01	k: 4493	n:10000
Cons ci ratio: 4.338240e-02	ci left: 4.396164e-01	ci right 4.592131e-01	k: 4494	n:10000
KS ci ratio: 5.148235e-02	ci left: 3.574437e-01	ci right 3.764339e-01	k: 3669	n:10000
FOXD4L1   10000 perm   2 sec   (5527 perm/sec)   p_kst 3.669000e-01   p_cons 4.494000e-01   p_joint 4.493000e-01

Outputting figure to mutsig2_images.part000000000066/FOXD4L1.3_1231_10000_0.3669_0.4494_0.4493.png
                gene_name: FOXD4L1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 67 percent done.
FOXJ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.689629e-02	ci left: 2.469740e-01	ci right 2.641687e-01	k: 2555	n:10000
Cons ci ratio: 6.285915e-02	ci left: 2.711159e-01	ci right 2.888125e-01	k: 2799	n:10000
KS ci ratio: 4.853484e-02	ci left: 3.851018e-01	ci right 4.043596e-01	k: 3947	n:10000
FOXJ3   10000 perm   2 sec   (5631 perm/sec)   p_kst 3.947000e-01   p_cons 2.799000e-01   p_joint 2.555000e-01

Outputting figure to mutsig2_images.part000000000066/FOXJ3.3_1917_10000_0.3947_0.2799_0.2555.png
                gene_name: FOXJ3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 69 percent done.
FOXN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.307477e-02	ci left: 1.744810e-01	ci right 1.897046e-01	k: 1820	n:10000
Cons ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
KS ci ratio: 5.481118e-02	ci left: 3.290250e-01	ci right 3.476693e-01	k: 3383	n:10000
FOXN1   10000 perm   2 sec   (5673 perm/sec)   p_kst 3.383000e-01   p_cons 5.140000e-02   p_joint 1.820000e-01

Joint ci ratio: 7.295216e-02	ci left: 1.215289e-01	ci right 1.307801e-01	k: 2522	n:20000
Cons ci ratio: 1.179307e-01	ci left: 4.925481e-02	ci right 5.547615e-02	k: 1046	n:20000
KS ci ratio: 3.833275e-02	ci left: 3.367177e-01	ci right 3.499278e-01	k: 6866	n:20000
FOXN1   20000 perm   4 sec   (5289 perm/sec)   p_kst 3.433000e-01   p_cons 5.230000e-02   p_joint 1.261000e-01

Joint ci ratio: 5.829008e-02	ci left: 1.271683e-01	ci right 1.348366e-01	k: 3929	n:30000
Cons ci ratio: 9.653424e-02	ci left: 4.957953e-02	ci right 5.464099e-02	k: 1562	n:30000
KS ci ratio: 3.125349e-02	ci left: 3.385899e-01	ci right 3.493736e-01	k: 10319	n:30000
FOXN1   30000 perm   6 sec   (5086 perm/sec)   p_kst 3.439667e-01   p_cons 5.206667e-02   p_joint 1.309667e-01

Outputting figure to mutsig2_images.part000000000066/FOXN1.3_1979_30000_0.34397_0.052067_0.13097.png
                gene_name: FOXN1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 71 percent done.
FOXN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.007393e-02	ci left: 4.790570e-01	ci right 4.987494e-01	k: 4889	n:10000
Cons ci ratio: 4.087600e-02	ci left: 4.691661e-01	ci right 4.888461e-01	k: 4790	n:10000
KS ci ratio: 5.921521e-02	ci left: 2.955875e-01	ci right 3.137265e-01	k: 3046	n:10000
FOXN2   10000 perm   2 sec   (6204 perm/sec)   p_kst 3.046000e-01   p_cons 4.790000e-01   p_joint 4.889000e-01

Outputting figure to mutsig2_images.part000000000066/FOXN2.3_1316_10000_0.3046_0.479_0.4889.png
                gene_name: FOXN2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 73 percent done.
FLVCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.450511e-02	ci left: 7.100773e-01	ci right 7.277950e-01	k: 7190	n:10000
KS ci ratio: 6.138026e-02	ci left: 2.807224e-01	ci right 2.986003e-01	k: 2896	n:10000
FLVCR1   10000 perm   2 sec   (6117 perm/sec)   p_kst 2.896000e-01   p_cons 7.190000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FLVCR1.2_1708_10000_0.2896_0.719_1.png
                gene_name: FLVCR1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
FMO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.483567e-02	ci left: 3.288264e-01	ci right 3.474680e-01	k: 3381	n:10000
Cons ci ratio: 1.407835e-02	ci left: 8.794036e-01	ci right 8.919707e-01	k: 8858	n:10000
KS ci ratio: 8.921899e-02	ci left: 1.545332e-01	ci right 1.690644e-01	k: 1617	n:10000
FMO1   10000 perm   2 sec   (5834 perm/sec)   p_kst 1.617000e-01   p_cons 8.858000e-01   p_joint 3.381000e-01

Outputting figure to mutsig2_images.part000000000066/FMO1.2_1631_10000_0.1617_0.8858_0.3381.png
                gene_name: FMO1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 76 percent done.
FMOD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.751644e-03	ci left: 9.482515e-01	ci right 9.566824e-01	k: 9526	n:10000
Cons ci ratio: 2.023559e-02	ci left: 7.814775e-01	ci right 7.975535e-01	k: 7896	n:10000
KS ci ratio: 1.397384e-02	ci left: 8.809390e-01	ci right 8.934345e-01	k: 8873	n:10000
FMOD   10000 perm   2 sec   (5716 perm/sec)   p_kst 8.873000e-01   p_cons 7.896000e-01   p_joint 9.526000e-01

Outputting figure to mutsig2_images.part000000000066/FMOD.2_1139_10000_0.8873_0.7896_0.9526.png
                gene_name: FMOD
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 78 percent done.
FN3KRP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.238060e-02	ci left: 3.494907e-01	ci right 3.683915e-01	k: 3589	n:10000
KS ci ratio: 1.789283e-02	ci left: 8.200516e-01	ci right 8.349571e-01	k: 8276	n:10000
FN3KRP   10000 perm   2 sec   (4847 perm/sec)   p_kst 8.276000e-01   p_cons 3.589000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FN3KRP.2_954_10000_0.8276_0.3589_1.png
                gene_name: FN3KRP
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
FOSB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.818617e-02	ci left: 2.398567e-01	ci right 2.568901e-01	k: 2483	n:10000
Cons ci ratio: 1.055514e-01	ci left: 1.147668e-01	ci right 1.276548e-01	k: 1211	n:10000
KS ci ratio: 3.429381e-02	ci left: 5.566188e-01	ci right 5.761425e-01	k: 5664	n:10000
FOSB   10000 perm   2 sec   (5995 perm/sec)   p_kst 5.664000e-01   p_cons 1.211000e-01   p_joint 2.483000e-01

Joint ci ratio: 4.771062e-02	ci left: 2.462919e-01	ci right 2.583802e-01	k: 5046	n:20000
Cons ci ratio: 7.296871e-02	ci left: 1.214797e-01	ci right 1.307293e-01	k: 2521	n:20000
KS ci ratio: 2.434728e-02	ci left: 5.575443e-01	ci right 5.713369e-01	k: 11289	n:20000
FOSB   20000 perm   4 sec   (5015 perm/sec)   p_kst 5.644500e-01   p_cons 1.260500e-01   p_joint 2.523000e-01

Outputting figure to mutsig2_images.part000000000066/FOSB.2_1033_20000_0.56445_0.12605_0.2523.png
                gene_name: FOSB
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 82 percent done.
FOSL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.779024e-01	ci left: 4.216838e-02	ci right 5.049848e-02	k: 462	n:10000
KS ci ratio: 4.721990e-02	ci left: 3.982459e-01	ci right 4.176078e-01	k: 4079	n:10000
FOSL2   10000 perm   2 sec   (6598 perm/sec)   p_kst 4.079000e-01   p_cons 4.620000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.242589e-01	ci left: 4.444751e-02	ci right 5.038496e-02	k: 947	n:20000
KS ci ratio: 3.361834e-02	ci left: 3.978369e-01	ci right 4.114908e-01	k: 8093	n:20000
FOSL2   20000 perm   3 sec   (5747 perm/sec)   p_kst 4.046500e-01   p_cons 4.735000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.012337e-01	ci left: 4.518536e-02	ci right 5.003607e-02	k: 1427	n:30000
KS ci ratio: 2.750623e-02	ci left: 3.981076e-01	ci right 4.092444e-01	k: 12110	n:30000
FOSL2   30000 perm   5 sec   (5478 perm/sec)   p_kst 4.036667e-01   p_cons 4.756667e-02   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 8.885366e-02	ci left: 4.433463e-02	ci right 4.848154e-02	k: 1855	n:40000
KS ci ratio: 2.374947e-02	ci left: 4.003086e-01	ci right 4.099551e-01	k: 16205	n:40000
FOSL2   40000 perm   8 sec   (5270 perm/sec)   p_kst 4.051250e-01   p_cons 4.637500e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FOSL2.2_997_40000_0.40513_0.046375_1.png
                gene_name: FOSL2
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
FOXF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.163954e-01	ci left: 1.379226e-03	ci right 3.328943e-03	k: 22	n:10000
Cons ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
KS ci ratio: 3.981388e-01	ci left: 7.692674e-03	ci right 1.160097e-02	k: 95	n:10000
FOXF2   10000 perm   2 sec   (5673 perm/sec)   p_kst 9.500000e-03   p_cons 1.400000e-03   p_joint 2.200000e-03

Joint ci ratio: 7.402732e-01	ci left: 8.898411e-04	ci right 1.963576e-03	k: 27	n:20000
Cons ci ratio: 6.818042e-01	ci left: 1.094648e-03	ci right 2.257979e-03	k: 32	n:20000
KS ci ratio: 2.924988e-01	ci left: 7.598793e-03	ci right 1.024694e-02	k: 177	n:20000
FOXF2   20000 perm   4 sec   (4988 perm/sec)   p_kst 8.850000e-03   p_cons 1.600000e-03   p_joint 1.350000e-03

Joint ci ratio: 6.440358e-01	ci left: 8.406024e-04	ci right 1.660923e-03	k: 36	n:30000
Cons ci ratio: 5.839110e-01	ci left: 1.065878e-03	ci right 1.968437e-03	k: 44	n:30000
KS ci ratio: 2.306832e-01	ci left: 8.433355e-03	ci right 1.066317e-02	k: 285	n:30000
FOXF2   30000 perm   6 sec   (4944 perm/sec)   p_kst 9.500000e-03   p_cons 1.466667e-03   p_joint 1.200000e-03

Joint ci ratio: 5.714476e-01	ci left: 8.420637e-04	ci right 1.533644e-03	k: 46	n:40000
Cons ci ratio: 5.282026e-01	ci left: 1.014319e-03	ci right 1.761095e-03	k: 54	n:40000
KS ci ratio: 1.950151e-01	ci left: 9.024339e-03	ci right 1.099777e-02	k: 399	n:40000
FOXF2   40000 perm   8 sec   (4893 perm/sec)   p_kst 9.975000e-03   p_cons 1.350000e-03   p_joint 1.150000e-03

Joint ci ratio: 5.235334e-01	ci left: 8.287747e-04	ci right 1.431564e-03	k: 55	n:50000
Cons ci ratio: 4.715821e-01	ci left: 1.056243e-03	ci right 1.723810e-03	k: 68	n:50000
KS ci ratio: 1.773156e-01	ci left: 8.821240e-03	ci right 1.055640e-02	k: 483	n:50000
FOXF2   50000 perm   10 sec   (4823 perm/sec)   p_kst 9.660000e-03   p_cons 1.360000e-03   p_joint 1.100000e-03

Joint ci ratio: 7.686023e-01	ci left: 2.696623e-04	ci right 6.150212e-04	k: 25	n:60000
Cons ci ratio: 4.352578e-01	ci left: 1.057388e-03	ci right 1.659178e-03	k: 80	n:60000
KS ci ratio: 1.600401e-01	ci left: 9.107247e-03	ci right 1.070736e-02	k: 593	n:60000
FOXF2   60000 perm   13 sec   (4746 perm/sec)   p_kst 9.883333e-03   p_cons 1.333333e-03   p_joint 4.166667e-04

Joint ci ratio: 1.181823e+00	ci left: 6.850761e-05	ci right 2.627036e-04	k: 10	n:70000
Cons ci ratio: 4.129356e-01	ci left: 1.021182e-03	ci right 1.564373e-03	k: 89	n:70000
KS ci ratio: 1.469947e-01	ci left: 9.317433e-03	ci right 1.080931e-02	k: 703	n:70000
FOXF2   70000 perm   15 sec   (4667 perm/sec)   p_kst 1.004286e-02   p_cons 1.271429e-03   p_joint 1.428571e-04

Joint ci ratio: 9.506327e-01	ci left: 1.143215e-04	ci right 3.247672e-04	k: 16	n:80000
Cons ci ratio: 3.937285e-01	ci left: 9.946227e-04	ci right 1.492683e-03	k: 98	n:80000
KS ci ratio: 1.367792e-01	ci left: 9.466981e-03	ci right 1.086888e-02	k: 812	n:80000
FOXF2   80000 perm   17 sec   (4584 perm/sec)   p_kst 1.015000e-02   p_cons 1.225000e-03   p_joint 2.000000e-04

Joint ci ratio: 4.062727e-01	ci left: 8.241325e-04	ci right 1.253520e-03	k: 92	n:90000
Cons ci ratio: 3.823275e-01	ci left: 9.442672e-04	ci right 1.399978e-03	k: 104	n:90000
KS ci ratio: 1.295754e-01	ci left: 9.413997e-03	ci right 1.072898e-02	k: 905	n:90000
FOXF2   90000 perm   20 sec   (4490 perm/sec)   p_kst 1.005556e-02   p_cons 1.155556e-03   p_joint 1.022222e-03

Joint ci ratio: 3.937778e-01	ci left: 7.956808e-04	ci right 1.194178e-03	k: 98	n:100000
Cons ci ratio: 3.637499e-01	ci left: 9.495334e-04	ci right 1.380242e-03	k: 115	n:100000
KS ci ratio: 1.229672e-01	ci left: 9.441030e-03	ci right 1.068763e-02	k: 1005	n:100000
FOXF2   100000 perm   23 sec   (4409 perm/sec)   p_kst 1.005000e-02   p_cons 1.150000e-03   p_joint 9.800000e-04

Joint ci ratio: 3.718805e-01	ci left: 8.219479e-04	ci right 1.205147e-03	k: 110	n:110000
Cons ci ratio: 3.359278e-01	ci left: 1.029086e-03	ci right 1.452462e-03	k: 135	n:110000
KS ci ratio: 1.165866e-01	ci left: 9.579302e-03	ci right 1.077401e-02	k: 1118	n:110000
FOXF2   110000 perm   25 sec   (4339 perm/sec)   p_kst 1.016364e-02   p_cons 1.227273e-03   p_joint 1.000000e-03

Joint ci ratio: 3.476582e-01	ci left: 8.747511e-04	ci right 1.250034e-03	k: 126	n:120000
Cons ci ratio: 3.253402e-01	ci left: 1.012103e-03	ci right 1.412629e-03	k: 144	n:120000
KS ci ratio: 1.114264e-01	ci left: 9.639193e-03	ci right 1.078466e-02	k: 1224	n:120000
FOXF2   120000 perm   28 sec   (4255 perm/sec)   p_kst 1.020000e-02   p_cons 1.200000e-03   p_joint 1.050000e-03

Joint ci ratio: 3.276253e-01	ci left: 9.201174e-04	ci right 1.287336e-03	k: 142	n:130000
Cons ci ratio: 3.097113e-01	ci left: 1.040446e-03	ci right 1.428507e-03	k: 159	n:130000
KS ci ratio: 1.071401e-01	ci left: 9.645926e-03	ci right 1.074532e-02	k: 1324	n:130000
FOXF2   130000 perm   31 sec   (4193 perm/sec)   p_kst 1.018462e-02   p_cons 1.223077e-03   p_joint 1.092308e-03

Joint ci ratio: 3.146865e-01	ci left: 9.332034e-04	ci right 1.287981e-03	k: 154	n:140000
Cons ci ratio: 3.022520e-01	ci left: 1.018883e-03	ci right 1.387990e-03	k: 167	n:140000
KS ci ratio: 1.035704e-01	ci left: 9.603703e-03	ci right 1.065959e-02	k: 1417	n:140000
FOXF2   140000 perm   34 sec   (4129 perm/sec)   p_kst 1.012143e-02   p_cons 1.192857e-03   p_joint 1.100000e-03

Joint ci ratio: 3.050027e-01	ci left: 9.324744e-04	ci right 1.273949e-03	k: 164	n:150000
Cons ci ratio: 2.936411e-01	ci left: 1.012642e-03	ci right 1.367092e-03	k: 177	n:150000
KS ci ratio: 1.000348e-01	ci left: 9.626149e-03	ci right 1.064625e-02	k: 1519	n:150000
FOXF2   150000 perm   37 sec   (4040 perm/sec)   p_kst 1.012667e-02   p_cons 1.180000e-03   p_joint 1.093333e-03

Joint ci ratio: 2.961611e-01	ci left: 9.319826e-04	ci right 1.261526e-03	k: 174	n:160000
Cons ci ratio: 2.834710e-01	ci left: 1.024724e-03	ci right 1.368761e-03	k: 190	n:160000
KS ci ratio: 9.698934e-02	ci left: 9.615826e-03	ci right 1.060205e-02	k: 1616	n:160000
FOXF2   160000 perm   40 sec   (3983 perm/sec)   p_kst 1.010000e-02   p_cons 1.187500e-03   p_joint 1.087500e-03

Joint ci ratio: 2.849787e-01	ci left: 9.535149e-04	ci right 1.275652e-03	k: 188	n:170000
Cons ci ratio: 2.770219e-01	ci left: 1.013667e-03	ci right 1.344899e-03	k: 199	n:170000
KS ci ratio: 9.445692e-02	ci left: 9.555430e-03	ci right 1.050845e-02	k: 1704	n:170000
FOXF2   170000 perm   43 sec   (3919 perm/sec)   p_kst 1.002353e-02   p_cons 1.170588e-03   p_joint 1.105882e-03

Joint ci ratio: 2.777270e-01	ci left: 9.521782e-04	ci right 1.264248e-03	k: 198	n:180000
Cons ci ratio: 2.703471e-01	ci left: 1.009095e-03	ci right 1.329541e-03	k: 209	n:180000
KS ci ratio: 9.193190e-02	ci left: 9.540046e-03	ci right 1.046473e-02	k: 1799	n:180000
FOXF2   180000 perm   47 sec   (3866 perm/sec)   p_kst 9.994444e-03   p_cons 1.161111e-03   p_joint 1.100000e-03

Joint ci ratio: 2.678140e-01	ci left: 9.756151e-04	ci right 1.282038e-03	k: 213	n:190000
Cons ci ratio: 2.623478e-01	ci left: 1.019839e-03	ci right 1.332542e-03	k: 222	n:190000
KS ci ratio: 8.924303e-02	ci left: 9.603784e-03	ci right 1.050600e-02	k: 1909	n:190000
FOXF2   190000 perm   50 sec   (3813 perm/sec)   p_kst 1.004737e-02   p_cons 1.168421e-03   p_joint 1.121053e-03

Joint ci ratio: 2.641403e-01	ci left: 9.548327e-04	ci right 1.249934e-03	k: 219	n:200000
Cons ci ratio: 2.566575e-01	ci left: 1.015595e-03	ci right 1.319161e-03	k: 232	n:200000
KS ci ratio: 8.719227e-02	ci left: 9.568549e-03	ci right 1.044574e-02	k: 2000	n:200000
FOXF2   200000 perm   53 sec   (3760 perm/sec)   p_kst 1.000000e-02   p_cons 1.160000e-03   p_joint 1.095000e-03

Joint ci ratio: 2.534188e-01	ci left: 9.939772e-04	ci right 1.286740e-03	k: 238	n:210000
Cons ci ratio: 2.502929e-01	ci left: 1.020747e-03	ci right 1.317108e-03	k: 244	n:210000
KS ci ratio: 8.454493e-02	ci left: 9.704708e-03	ci right 1.056604e-02	k: 2127	n:210000
FOXF2   210000 perm   57 sec   (3684 perm/sec)   p_kst 1.012857e-02   p_cons 1.161905e-03   p_joint 1.133333e-03

Joint ci ratio: 2.497897e-01	ci left: 9.786074e-04	ci right 1.262073e-03	k: 245	n:220000
Cons ci ratio: 2.463060e-01	ci left: 1.008450e-03	ci right 1.295863e-03	k: 252	n:220000
KS ci ratio: 8.270112e-02	ci left: 9.690820e-03	ci right 1.053125e-02	k: 2223	n:220000
FOXF2   220000 perm   61 sec   (3634 perm/sec)   p_kst 1.010455e-02   p_cons 1.145455e-03   p_joint 1.113636e-03

Joint ci ratio: 2.406644e-01	ci left: 1.013596e-03	ci right 1.294871e-03	k: 264	n:230000
Cons ci ratio: 2.397603e-01	ci left: 1.021768e-03	ci right 1.304088e-03	k: 266	n:230000
KS ci ratio: 8.074468e-02	ci left: 9.733716e-03	ci right 1.055696e-02	k: 2332	n:230000
FOXF2   230000 perm   64 sec   (3584 perm/sec)   p_kst 1.013913e-02   p_cons 1.156522e-03   p_joint 1.147826e-03

Joint ci ratio: 2.358201e-01	ci left: 1.014460e-03	ci right 1.289482e-03	k: 275	n:240000
Cons ci ratio: 2.332949e-01	ci left: 1.037993e-03	ci right 1.315946e-03	k: 281	n:240000
KS ci ratio: 7.924933e-02	ci left: 9.691551e-03	ci right 1.049535e-02	k: 2421	n:240000
FOXF2   240000 perm   68 sec   (3538 perm/sec)   p_kst 1.008750e-02   p_cons 1.170833e-03   p_joint 1.145833e-03

Joint ci ratio: 2.316614e-01	ci left: 1.011539e-03	ci right 1.280241e-03	k: 285	n:250000
Cons ci ratio: 2.292662e-01	ci left: 1.034155e-03	ci right 1.305622e-03	k: 291	n:250000
KS ci ratio: 7.777153e-02	ci left: 9.668581e-03	ci right 1.045484e-02	k: 2514	n:250000
FOXF2   250000 perm   72 sec   (3492 perm/sec)   p_kst 1.005600e-02   p_cons 1.164000e-03   p_joint 1.140000e-03

Joint ci ratio: 2.265686e-01	ci left: 1.019765e-03	ci right 1.283865e-03	k: 298	n:260000
Cons ci ratio: 2.250664e-01	ci left: 1.034280e-03	ci right 1.300117e-03	k: 302	n:260000
KS ci ratio: 7.612321e-02	ci left: 9.711656e-03	ci right 1.048394e-02	k: 2624	n:260000
FOXF2   260000 perm   75 sec   (3448 perm/sec)   p_kst 1.009231e-02   p_cons 1.161538e-03   p_joint 1.146154e-03

Joint ci ratio: 2.217976e-01	ci left: 1.027441e-03	ci right 1.287161e-03	k: 311	n:270000
Cons ci ratio: 2.217976e-01	ci left: 1.027441e-03	ci right 1.287161e-03	k: 311	n:270000
KS ci ratio: 7.474125e-02	ci left: 9.708081e-03	ci right 1.046545e-02	k: 2722	n:270000
FOXF2   270000 perm   79 sec   (3402 perm/sec)   p_kst 1.008148e-02   p_cons 1.151852e-03   p_joint 1.151852e-03

Joint ci ratio: 2.193524e-01	ci left: 1.014365e-03	ci right 1.267571e-03	k: 318	n:280000
Cons ci ratio: 2.196974e-01	ci left: 1.010990e-03	ci right 1.263804e-03	k: 317	n:280000
KS ci ratio: 7.365645e-02	ci left: 9.645270e-03	ci right 1.038635e-02	k: 2803	n:280000
FOXF2   280000 perm   83 sec   (3357 perm/sec)   p_kst 1.001071e-02   p_cons 1.132143e-03   p_joint 1.135714e-03

Joint ci ratio: 2.156657e-01	ci left: 1.015252e-03	ci right 1.263856e-03	k: 329	n:290000
Cons ci ratio: 2.169863e-01	ci left: 1.002205e-03	ci right 1.249318e-03	k: 325	n:290000
KS ci ratio: 7.251603e-02	ci left: 9.613956e-03	ci right 1.034071e-02	k: 2892	n:290000
FOXF2   290000 perm   87 sec   (3315 perm/sec)   p_kst 9.972414e-03   p_cons 1.120690e-03   p_joint 1.134483e-03

Joint ci ratio: 2.137334e-01	ci left: 1.000334e-03	ci right 1.242803e-03	k: 335	n:300000
Cons ci ratio: 2.130994e-01	ci left: 1.006644e-03	ci right 1.249825e-03	k: 337	n:300000
KS ci ratio: 7.147542e-02	ci left: 9.571715e-03	ci right 1.028447e-02	k: 2977	n:300000
FOXF2   300000 perm   92 sec   (3269 perm/sec)   p_kst 9.923333e-03   p_cons 1.123333e-03   p_joint 1.116667e-03

Joint ci ratio: 2.106225e-01	ci left: 9.986087e-04	ci right 1.236682e-03	k: 345	n:310000
Cons ci ratio: 2.082263e-01	ci left: 1.023063e-03	ci right 1.263838e-03	k: 353	n:310000
KS ci ratio: 7.045511e-02	ci left: 9.538609e-03	ci right 1.023834e-02	k: 3064	n:310000
FOXF2   310000 perm   96 sec   (3229 perm/sec)   p_kst 9.883871e-03   p_cons 1.138710e-03   p_joint 1.112903e-03

Joint ci ratio: 2.070622e-01	ci left: 1.002941e-03	ci right 1.237494e-03	k: 357	n:320000
Cons ci ratio: 2.056296e-01	ci left: 1.017760e-03	ci right 1.253924e-03	k: 362	n:320000
KS ci ratio: 6.935516e-02	ci left: 9.541425e-03	ci right 1.022999e-02	k: 3162	n:320000
FOXF2   320000 perm   101 sec   (3181 perm/sec)   p_kst 9.881250e-03   p_cons 1.131250e-03   p_joint 1.115625e-03

Joint ci ratio: 2.053502e-01	ci left: 9.897914e-04	ci right 1.219114e-03	k: 363	n:330000
Cons ci ratio: 2.031276e-01	ci left: 1.012795e-03	ci right 1.244593e-03	k: 371	n:330000
KS ci ratio: 6.829459e-02	ci left: 9.547128e-03	ci right 1.022516e-02	k: 3261	n:330000
FOXF2   330000 perm   105 sec   (3130 perm/sec)   p_kst 9.881818e-03   p_cons 1.124242e-03   p_joint 1.100000e-03

Joint ci ratio: 2.020465e-01	ci left: 9.941741e-04	ci right 1.220350e-03	k: 375	n:340000
Cons ci ratio: 2.012443e-01	ci left: 1.002553e-03	ci right 1.229617e-03	k: 378	n:340000
KS ci ratio: 6.725093e-02	ci left: 9.561248e-03	ci right 1.022950e-02	k: 3363	n:340000
FOXF2   340000 perm   111 sec   (3075 perm/sec)   p_kst 9.891176e-03   p_cons 1.111765e-03   p_joint 1.102941e-03

Joint ci ratio: 1.973753e-01	ci left: 1.014627e-03	ci right 1.239478e-03	k: 393	n:350000
Cons ci ratio: 1.983860e-01	ci left: 1.003765e-03	ci right 1.227484e-03	k: 389	n:350000
KS ci ratio: 6.608060e-02	ci left: 9.625222e-03	ci right 1.028579e-02	k: 3483	n:350000
FOXF2   350000 perm   115 sec   (3035 perm/sec)   p_kst 9.951429e-03   p_cons 1.111429e-03   p_joint 1.122857e-03

Joint ci ratio: 1.941970e-01	ci left: 1.020785e-03	ci right 1.242926e-03	k: 406	n:360000
Cons ci ratio: 1.951595e-01	ci left: 1.010215e-03	ci right 1.231275e-03	k: 402	n:360000
KS ci ratio: 6.507884e-02	ci left: 9.652939e-03	ci right 1.030498e-02	k: 3591	n:360000
FOXF2   360000 perm   120 sec   (3000 perm/sec)   p_kst 9.975000e-03   p_cons 1.116667e-03   p_joint 1.127778e-03

Joint ci ratio: 1.920855e-01	ci left: 1.016344e-03	ci right 1.234833e-03	k: 415	n:370000
Cons ci ratio: 1.942000e-01	ci left: 9.931945e-04	ci right 1.209336e-03	k: 406	n:370000
KS ci ratio: 6.417387e-02	ci left: 9.663271e-03	ci right 1.030660e-02	k: 3693	n:370000
FOXF2   370000 perm   125 sec   (2964 perm/sec)   p_kst 9.981081e-03   p_cons 1.097297e-03   p_joint 1.121622e-03

Joint ci ratio: 1.882756e-01	ci left: 1.032206e-03	ci right 1.249201e-03	k: 432	n:380000
Cons ci ratio: 1.920883e-01	ci left: 9.895966e-04	ci right 1.202339e-03	k: 415	n:380000
KS ci ratio: 6.335622e-02	ci left: 9.657577e-03	ci right 1.029203e-02	k: 3789	n:380000
FOXF2   380000 perm   130 sec   (2929 perm/sec)   p_kst 9.971053e-03   p_cons 1.092105e-03   p_joint 1.136842e-03

Joint ci ratio: 1.850960e-01	ci left: 1.042404e-03	ci right 1.257426e-03	k: 447	n:390000
Cons ci ratio: 1.889347e-01	ci left: 9.984082e-04	ci right 1.209117e-03	k: 429	n:390000
KS ci ratio: 6.246361e-02	ci left: 9.685041e-03	ci right 1.031201e-02	k: 3898	n:390000
FOXF2   390000 perm   135 sec   (2893 perm/sec)   p_kst 9.994872e-03   p_cons 1.100000e-03   p_joint 1.146154e-03

Joint ci ratio: 1.818756e-01	ci left: 1.054507e-03	ci right 1.267825e-03	k: 463	n:400000
Cons ci ratio: 1.863521e-01	ci left: 1.002039e-03	ci right 1.210296e-03	k: 441	n:400000
KS ci ratio: 6.173227e-02	ci left: 9.671803e-03	ci right 1.029033e-02	k: 3991	n:400000
FOXF2   400000 perm   140 sec   (2853 perm/sec)   p_kst 9.977500e-03   p_cons 1.102500e-03   p_joint 1.157500e-03

Joint ci ratio: 1.793798e-01	ci left: 1.059061e-03	ci right 1.270041e-03	k: 476	n:410000
Cons ci ratio: 1.848947e-01	ci left: 9.938784e-04	ci right 1.198643e-03	k: 448	n:410000
KS ci ratio: 6.091317e-02	ci left: 9.695284e-03	ci right 1.030679e-02	k: 4099	n:410000
FOXF2   410000 perm   145 sec   (2819 perm/sec)   p_kst 9.997561e-03   p_cons 1.092683e-03   p_joint 1.160976e-03

Joint ci ratio: 1.775289e-01	ci left: 1.056591e-03	ci right 1.264674e-03	k: 486	n:420000
Cons ci ratio: 1.822744e-01	ci left: 9.997449e-04	ci right 1.202477e-03	k: 461	n:420000
KS ci ratio: 6.028522e-02	ci left: 9.666099e-03	ci right 1.026926e-02	k: 4185	n:420000
FOXF2   420000 perm   151 sec   (2789 perm/sec)   p_kst 9.964286e-03   p_cons 1.097619e-03   p_joint 1.157143e-03

Joint ci ratio: 1.755574e-01	ci left: 1.056471e-03	ci right 1.261974e-03	k: 497	n:430000
Cons ci ratio: 1.790094e-01	ci left: 1.014243e-03	ci right 1.215832e-03	k: 478	n:430000
KS ci ratio: 5.945180e-02	ci left: 9.711623e-03	ci right 1.030896e-02	k: 4303	n:430000
FOXF2   430000 perm   156 sec   (2759 perm/sec)   p_kst 1.000698e-02   p_cons 1.111628e-03   p_joint 1.155814e-03

Joint ci ratio: 1.728026e-01	ci left: 1.067239e-03	ci right 1.271240e-03	k: 513	n:440000
Cons ci ratio: 1.771698e-01	ci left: 1.012906e-03	ci right 1.211939e-03	k: 488	n:440000
KS ci ratio: 5.874601e-02	ci left: 9.723777e-03	ci right 1.031452e-02	k: 4407	n:440000
FOXF2   440000 perm   161 sec   (2727 perm/sec)   p_kst 1.001591e-02   p_cons 1.109091e-03   p_joint 1.165909e-03

Joint ci ratio: 1.706577e-01	ci left: 1.071170e-03	ci right 1.273119e-03	k: 526	n:450000
Cons ci ratio: 1.748604e-01	ci left: 1.018014e-03	ci right 1.215167e-03	k: 501	n:450000
KS ci ratio: 5.807128e-02	ci left: 9.733240e-03	ci right 1.031754e-02	k: 4510	n:450000
FOXF2   450000 perm   167 sec   (2693 perm/sec)   p_kst 1.002222e-02   p_cons 1.113333e-03   p_joint 1.168889e-03

Joint ci ratio: 1.685907e-01	ci left: 1.074945e-03	ci right 1.274902e-03	k: 539	n:460000
Cons ci ratio: 1.729755e-01	ci left: 1.018755e-03	ci right 1.213703e-03	k: 512	n:460000
KS ci ratio: 5.731897e-02	ci left: 9.776617e-03	ci right 1.035567e-02	k: 4629	n:460000
FOXF2   460000 perm   172 sec   (2667 perm/sec)   p_kst 1.006304e-02   p_cons 1.113043e-03   p_joint 1.171739e-03

Joint ci ratio: 1.676629e-01	ci left: 1.064302e-03	ci right 1.261079e-03	k: 545	n:470000
Cons ci ratio: 1.705001e-01	ci left: 1.027623e-03	ci right 1.221165e-03	k: 527	n:470000
KS ci ratio: 5.669171e-02	ci left: 9.784630e-03	ci right 1.035760e-02	k: 4732	n:470000
FOXF2   470000 perm   178 sec   (2641 perm/sec)   p_kst 1.006809e-02   p_cons 1.121277e-03   p_joint 1.159574e-03

Joint ci ratio: 1.665991e-01	ci left: 1.056102e-03	ci right 1.250000e-03	k: 552	n:480000
Cons ci ratio: 1.687514e-01	ci left: 1.028158e-03	ci right 1.219612e-03	k: 538	n:480000
KS ci ratio: 5.616678e-02	ci left: 9.763581e-03	ci right 1.032986e-02	k: 4821	n:480000
FOXF2   480000 perm   184 sec   (2613 perm/sec)   p_kst 1.004375e-02   p_cons 1.120833e-03   p_joint 1.150000e-03

Joint ci ratio: 1.645291e-01	ci left: 1.061937e-03	ci right 1.254244e-03	k: 566	n:490000
Cons ci ratio: 1.663003e-01	ci left: 1.038460e-03	ci right 1.228743e-03	k: 554	n:490000
KS ci ratio: 5.553067e-02	ci left: 9.787695e-03	ci right 1.034873e-02	k: 4932	n:490000
FOXF2   490000 perm   189 sec   (2587 perm/sec)   p_kst 1.006531e-02   p_cons 1.130612e-03   p_joint 1.155102e-03

Joint ci ratio: 1.621158e-01	ci left: 1.073309e-03	ci right 1.264547e-03	k: 583	n:500000
Cons ci ratio: 1.651151e-01	ci left: 1.033027e-03	ci right 1.220831e-03	k: 562	n:500000
KS ci ratio: 5.497627e-02	ci left: 9.789178e-03	ci right 1.034452e-02	k: 5032	n:500000
FOXF2   500000 perm   195 sec   (2560 perm/sec)   p_kst 1.006400e-02   p_cons 1.124000e-03   p_joint 1.166000e-03

Joint ci ratio: 1.611536e-01	ci left: 1.065433e-03	ci right 1.254032e-03	k: 590	n:510000
Cons ci ratio: 1.635254e-01	ci left: 1.033453e-03	ci right 1.219348e-03	k: 573	n:510000
KS ci ratio: 5.442745e-02	ci left: 9.794498e-03	ci right 1.034442e-02	k: 5134	n:510000
FOXF2   510000 perm   201 sec   (2536 perm/sec)   p_kst 1.006667e-02   p_cons 1.123529e-03   p_joint 1.156863e-03

Joint ci ratio: 1.596746e-01	ci left: 1.065249e-03	ci right 1.251919e-03	k: 601	n:520000
Cons ci ratio: 1.622586e-01	ci left: 1.030181e-03	ci right 1.213912e-03	k: 582	n:520000
KS ci ratio: 5.384802e-02	ci left: 9.816718e-03	ci right 1.036184e-02	k: 5245	n:520000
FOXF2   520000 perm   207 sec   (2510 perm/sec)   p_kst 1.008654e-02   p_cons 1.119231e-03   p_joint 1.155769e-03

Joint ci ratio: 1.578493e-01	ci left: 1.070516e-03	ci right 1.255761e-03	k: 615	n:530000
Cons ci ratio: 1.608849e-01	ci left: 1.028848e-03	ci right 1.210638e-03	k: 592	n:530000
KS ci ratio: 5.345835e-02	ci left: 9.774825e-03	ci right 1.031357e-02	k: 5322	n:530000
FOXF2   530000 perm   214 sec   (2480 perm/sec)   p_kst 1.004151e-02   p_cons 1.116981e-03   p_joint 1.160377e-03

Joint ci ratio: 1.564587e-01	ci left: 1.070261e-03	ci right 1.253677e-03	k: 626	n:540000
Cons ci ratio: 1.592812e-01	ci left: 1.031128e-03	ci right 1.211330e-03	k: 604	n:540000
KS ci ratio: 5.299281e-02	ci left: 9.765566e-03	ci right 1.029897e-02	k: 5416	n:540000
FOXF2   540000 perm   221 sec   (2446 perm/sec)   p_kst 1.002963e-02   p_cons 1.118519e-03   p_joint 1.159259e-03

Joint ci ratio: 1.555932e-01	ci left: 1.063032e-03	ci right 1.244107e-03	k: 633	n:550000
Cons ci ratio: 1.575968e-01	ci left: 1.035079e-03	ci right 1.213879e-03	k: 617	n:550000
KS ci ratio: 5.250075e-02	ci left: 9.771019e-03	ci right 1.029962e-02	k: 5518	n:550000
FOXF2   550000 perm   227 sec   (2423 perm/sec)   p_kst 1.003273e-02   p_cons 1.121818e-03   p_joint 1.150909e-03

Joint ci ratio: 1.542608e-01	ci left: 1.062930e-03	ci right 1.242295e-03	k: 644	n:560000
Cons ci ratio: 1.565870e-01	ci left: 1.030320e-03	ci right 1.207049e-03	k: 625	n:560000
KS ci ratio: 5.205022e-02	ci left: 9.765724e-03	ci right 1.028936e-02	k: 5614	n:560000
FOXF2   560000 perm   233 sec   (2398 perm/sec)   p_kst 1.002500e-02   p_cons 1.116071e-03   p_joint 1.150000e-03

Joint ci ratio: 1.530789e-01	ci left: 1.061151e-03	ci right 1.238718e-03	k: 654	n:570000
Cons ci ratio: 1.553512e-01	ci left: 1.029103e-03	ci right 1.204101e-03	k: 635	n:570000
KS ci ratio: 5.157461e-02	ci left: 9.774489e-03	ci right 1.029367e-02	k: 5718	n:570000
FOXF2   570000 perm   240 sec   (2376 perm/sec)   p_kst 1.003158e-02   p_cons 1.114035e-03   p_joint 1.147368e-03

Joint ci ratio: 1.515819e-01	ci left: 1.064415e-03	ci right 1.240628e-03	k: 667	n:580000
Cons ci ratio: 1.533149e-01	ci left: 1.039539e-03	ci right 1.213782e-03	k: 652	n:580000
KS ci ratio: 5.104985e-02	ci left: 9.806805e-03	ci right 1.032224e-02	k: 5836	n:580000
FOXF2   580000 perm   246 sec   (2354 perm/sec)   p_kst 1.006207e-02   p_cons 1.124138e-03   p_joint 1.150000e-03

Joint ci ratio: 1.500177e-01	ci left: 1.069208e-03	ci right 1.244224e-03	k: 681	n:590000
Cons ci ratio: 1.523848e-01	ci left: 1.034960e-03	ci right 1.207287e-03	k: 660	n:590000
KS ci ratio: 5.062674e-02	ci left: 9.804578e-03	ci right 1.031550e-02	k: 5934	n:590000
FOXF2   590000 perm   253 sec   (2332 perm/sec)   p_kst 1.005763e-02   p_cons 1.118644e-03   p_joint 1.154237e-03

Joint ci ratio: 1.486078e-01	ci left: 1.072245e-03	ci right 1.245962e-03	k: 694	n:600000
Cons ci ratio: 1.506841e-01	ci left: 1.041763e-03	ci right 1.213112e-03	k: 675	n:600000
KS ci ratio: 5.020137e-02	ci left: 9.807380e-03	ci right 1.031403e-02	k: 6035	n:600000
FOXF2   600000 perm   260 sec   (2305 perm/sec)   p_kst 1.005833e-02   p_cons 1.125000e-03   p_joint 1.156667e-03

Joint ci ratio: 1.476552e-01	ci left: 1.068875e-03	ci right 1.240837e-03	k: 703	n:610000
Cons ci ratio: 1.496913e-01	ci left: 1.038884e-03	ci right 1.208534e-03	k: 684	n:610000
KS ci ratio: 4.977835e-02	ci left: 9.813346e-03	ci right 1.031591e-02	k: 6138	n:610000
FOXF2   610000 perm   267 sec   (2283 perm/sec)   p_kst 1.006230e-02   p_cons 1.121311e-03   p_joint 1.152459e-03

Joint ci ratio: 1.466177e-01	ci left: 1.067170e-03	ci right 1.237546e-03	k: 713	n:620000
Cons ci ratio: 1.478670e-01	ci left: 1.048527e-03	ci right 1.217480e-03	k: 701	n:620000
KS ci ratio: 4.937384e-02	ci left: 9.815950e-03	ci right 1.031445e-02	k: 6239	n:620000
FOXF2   620000 perm   274 sec   (2263 perm/sec)   p_kst 1.006290e-02   p_cons 1.130645e-03   p_joint 1.150000e-03

Joint ci ratio: 1.457026e-01	ci left: 1.063994e-03	ci right 1.232711e-03	k: 722	n:630000
Cons ci ratio: 1.471357e-01	ci left: 1.042585e-03	ci right 1.209676e-03	k: 708	n:630000
KS ci ratio: 4.899855e-02	ci left: 9.810648e-03	ci right 1.030498e-02	k: 6335	n:630000
FOXF2   630000 perm   281 sec   (2242 perm/sec)   p_kst 1.005556e-02   p_cons 1.123810e-03   p_joint 1.146032e-03

Joint ci ratio: 1.441161e-01	ci left: 1.071463e-03	ci right 1.239355e-03	k: 738	n:640000
Cons ci ratio: 1.458049e-01	ci left: 1.045863e-03	ci right 1.211831e-03	k: 721	n:640000
KS ci ratio: 4.861261e-02	ci left: 9.813243e-03	ci right 1.030371e-02	k: 6436	n:640000
FOXF2   640000 perm   288 sec   (2223 perm/sec)   p_kst 1.005625e-02   p_cons 1.126562e-03   p_joint 1.153125e-03

Joint ci ratio: 1.431510e-01	ci left: 1.069810e-03	ci right 1.236225e-03	k: 748	n:650000
Cons ci ratio: 1.438255e-01	ci left: 1.059427e-03	ci right 1.225070e-03	k: 741	n:650000
KS ci ratio: 4.825428e-02	ci left: 9.808173e-03	ci right 1.029467e-02	k: 6532	n:650000
FOXF2   650000 perm   295 sec   (2205 perm/sec)   p_kst 1.004923e-02   p_cons 1.140000e-03   p_joint 1.150769e-03

Joint ci ratio: 1.416456e-01	ci left: 1.076980e-03	ci right 1.242600e-03	k: 764	n:660000
Cons ci ratio: 1.423930e-01	ci left: 1.065289e-03	ci right 1.230049e-03	k: 756	n:660000
KS ci ratio: 4.782004e-02	ci left: 9.837705e-03	ci right 1.032115e-02	k: 6651	n:660000
FOXF2   660000 perm   302 sec   (2185 perm/sec)   p_kst 1.007727e-02   p_cons 1.145455e-03   p_joint 1.157576e-03

Joint ci ratio: 1.408200e-01	ci left: 1.073864e-03	ci right 1.237961e-03	k: 773	n:670000
Cons ci ratio: 1.412776e-01	ci left: 1.066664e-03	ci right 1.230235e-03	k: 768	n:670000
KS ci ratio: 4.745753e-02	ci left: 9.841300e-03	ci right 1.032116e-02	k: 6753	n:670000
FOXF2   670000 perm   309 sec   (2168 perm/sec)   p_kst 1.007910e-02   p_cons 1.146269e-03   p_joint 1.153731e-03

Joint ci ratio: 1.398299e-01	ci left: 1.073680e-03	ci right 1.236500e-03	k: 784	n:680000
Cons ci ratio: 1.405487e-01	ci left: 1.062328e-03	ci right 1.224323e-03	k: 776	n:680000
KS ci ratio: 4.706502e-02	ci left: 9.860790e-03	ci right 1.033752e-02	k: 6866	n:680000
FOXF2   680000 perm   316 sec   (2151 perm/sec)   p_kst 1.009706e-02   p_cons 1.141176e-03   p_joint 1.152941e-03

Joint ci ratio: 1.387732e-01	ci left: 1.074905e-03	ci right 1.236576e-03	k: 796	n:690000
Cons ci ratio: 1.394758e-01	ci left: 1.063714e-03	ci right 1.224579e-03	k: 788	n:690000
KS ci ratio: 4.675318e-02	ci left: 9.849648e-03	ci right 1.032259e-02	k: 6958	n:690000
FOXF2   690000 perm   323 sec   (2134 perm/sec)   p_kst 1.008406e-02   p_cons 1.142029e-03   p_joint 1.153623e-03

Joint ci ratio: 1.374004e-01	ci left: 1.081617e-03	ci right 1.242557e-03	k: 812	n:700000
Cons ci ratio: 1.381682e-01	ci left: 1.069203e-03	ci right 1.229257e-03	k: 803	n:700000
KS ci ratio: 4.639432e-02	ci left: 9.861429e-03	ci right 1.033121e-02	k: 7066	n:700000
FOXF2   700000 perm   331 sec   (2113 perm/sec)   p_kst 1.009429e-02   p_cons 1.147143e-03   p_joint 1.160000e-03

Joint ci ratio: 1.365633e-01	ci left: 1.079985e-03	ci right 1.239623e-03	k: 822	n:710000
Cons ci ratio: 1.373170e-01	ci left: 1.067742e-03	ci right 1.226514e-03	k: 813	n:710000
KS ci ratio: 4.609880e-02	ci left: 9.849221e-03	ci right 1.031535e-02	k: 7157	n:710000
FOXF2   710000 perm   339 sec   (2097 perm/sec)   p_kst 1.008028e-02   p_cons 1.145070e-03   p_joint 1.157746e-03

Joint ci ratio: 1.355784e-01	ci left: 1.081084e-03	ci right 1.239640e-03	k: 834	n:720000
Cons ci ratio: 1.365644e-01	ci left: 1.064984e-03	ci right 1.222407e-03	k: 822	n:720000
KS ci ratio: 4.572291e-02	ci left: 9.874437e-03	ci right 1.033785e-02	k: 7275	n:720000
FOXF2   720000 perm   346 sec   (2079 perm/sec)   p_kst 1.010417e-02   p_cons 1.141667e-03   p_joint 1.158333e-03

Joint ci ratio: 1.346942e-01	ci left: 1.080834e-03	ci right 1.238236e-03	k: 845	n:730000
Cons ci ratio: 1.354983e-01	ci left: 1.067598e-03	ci right 1.224075e-03	k: 835	n:730000
KS ci ratio: 4.543061e-02	ci left: 9.866469e-03	ci right 1.032647e-02	k: 7369	n:730000
FOXF2   730000 perm   354 sec   (2061 perm/sec)   p_kst 1.009452e-02   p_cons 1.143836e-03   p_joint 1.157534e-03

Joint ci ratio: 1.335154e-01	ci left: 1.085818e-03	ci right 1.242453e-03	k: 860	n:740000
Cons ci ratio: 1.346156e-01	ci left: 1.067533e-03	ci right 1.222901e-03	k: 846	n:740000
KS ci ratio: 4.513163e-02	ci left: 9.864071e-03	ci right 1.032086e-02	k: 7467	n:740000
FOXF2   740000 perm   362 sec   (2042 perm/sec)   p_kst 1.009054e-02   p_cons 1.143243e-03   p_joint 1.162162e-03

Joint ci ratio: 1.323671e-01	ci left: 1.090676e-03	ci right 1.246551e-03	k: 875	n:750000
Cons ci ratio: 1.340632e-01	ci left: 1.062319e-03	ci right 1.216242e-03	k: 853	n:750000
KS ci ratio: 4.483848e-02	ci left: 9.861747e-03	ci right 1.031538e-02	k: 7565	n:750000
FOXF2   750000 perm   371 sec   (2023 perm/sec)   p_kst 1.008667e-02   p_cons 1.137333e-03   p_joint 1.166667e-03

Joint ci ratio: 1.317671e-01	ci left: 1.086503e-03	ci right 1.241023e-03	k: 883	n:760000
Cons ci ratio: 1.330541e-01	ci left: 1.064875e-03	ci right 1.217915e-03	k: 866	n:760000
KS ci ratio: 4.462160e-02	ci left: 9.828263e-03	ci right 1.027811e-02	k: 7639	n:760000
FOXF2   760000 perm   379 sec   (2006 perm/sec)   p_kst 1.005132e-02   p_cons 1.139474e-03   p_joint 1.161842e-03

Joint ci ratio: 1.310282e-01	ci left: 1.084953e-03	ci right 1.238320e-03	k: 893	n:770000
Cons ci ratio: 1.323691e-01	ci left: 1.062346e-03	ci right 1.214175e-03	k: 875	n:770000
KS ci ratio: 4.431219e-02	ci left: 9.838040e-03	ci right 1.028514e-02	k: 7746	n:770000
FOXF2   770000 perm   388 sec   (1982 perm/sec)   p_kst 1.005974e-02   p_cons 1.136364e-03   p_joint 1.159740e-03

Joint ci ratio: 1.301575e-01	ci left: 1.085925e-03	ci right 1.238331e-03	k: 905	n:780000
Cons ci ratio: 1.314716e-01	ci left: 1.063603e-03	ci right 1.214500e-03	k: 887	n:780000
KS ci ratio: 4.400630e-02	ci left: 9.848845e-03	ci right 1.029327e-02	k: 7854	n:780000
FOXF2   780000 perm   397 sec   (1966 perm/sec)   p_kst 1.006923e-02   p_cons 1.137179e-03   p_joint 1.160256e-03

Joint ci ratio: 1.296580e-01	ci left: 1.080752e-03	ci right 1.231805e-03	k: 912	n:790000
Cons ci ratio: 1.306648e-01	ci left: 1.063607e-03	ci right 1.213507e-03	k: 898	n:790000
KS ci ratio: 4.374552e-02	ci left: 9.841858e-03	ci right 1.028326e-02	k: 7948	n:790000
FOXF2   790000 perm   405 sec   (1951 perm/sec)   p_kst 1.006076e-02   p_cons 1.136709e-03   p_joint 1.154430e-03

Joint ci ratio: 1.285363e-01	ci left: 1.086597e-03	ci right 1.237053e-03	k: 928	n:800000
Cons ci ratio: 1.298727e-01	ci left: 1.063614e-03	ci right 1.212536e-03	k: 909	n:800000
KS ci ratio: 4.345658e-02	ci left: 9.849891e-03	ci right 1.028867e-02	k: 8054	n:800000
FOXF2   800000 perm   413 sec   (1936 perm/sec)   p_kst 1.006750e-02   p_cons 1.136250e-03   p_joint 1.160000e-03

Joint ci ratio: 1.275107e-01	ci left: 1.091108e-03	ci right 1.240891e-03	k: 943	n:810000
Cons ci ratio: 1.289548e-01	ci left: 1.066013e-03	ci right 1.214135e-03	k: 922	n:810000
KS ci ratio: 4.317062e-02	ci left: 9.858956e-03	ci right 1.029518e-02	k: 8161	n:810000
FOXF2   810000 perm   421 sec   (1922 perm/sec)   p_kst 1.007531e-02   p_cons 1.138272e-03   p_joint 1.164198e-03

Joint ci ratio: 1.267743e-01	ci left: 1.090790e-03	ci right 1.239600e-03	k: 954	n:820000
Cons ci ratio: 1.280560e-01	ci left: 1.068357e-03	ci right 1.215692e-03	k: 935	n:820000
KS ci ratio: 4.291121e-02	ci left: 9.858158e-03	ci right 1.029166e-02	k: 8260	n:820000
FOXF2   820000 perm   430 sec   (1907 perm/sec)   p_kst 1.007317e-02   p_cons 1.140244e-03   p_joint 1.163415e-03

Joint ci ratio: 1.261813e-01	ci left: 1.088148e-03	ci right 1.235851e-03	k: 963	n:830000
Cons ci ratio: 1.271757e-01	ci left: 1.070647e-03	ci right 1.217207e-03	k: 948	n:830000
KS ci ratio: 4.268996e-02	ci left: 9.841888e-03	ci right 1.027238e-02	k: 8346	n:830000
FOXF2   830000 perm   438 sec   (1894 perm/sec)   p_kst 1.005542e-02   p_cons 1.142169e-03   p_joint 1.160241e-03

Joint ci ratio: 1.254032e-01	ci left: 1.089030e-03	ci right 1.235874e-03	k: 975	n:840000
Cons ci ratio: 1.268425e-01	ci left: 1.063665e-03	ci right 1.208858e-03	k: 953	n:840000
KS ci ratio: 4.247210e-02	ci left: 9.826012e-03	ci right 1.025357e-02	k: 8432	n:840000
FOXF2   840000 perm   447 sec   (1878 perm/sec)   p_kst 1.003810e-02   p_cons 1.134524e-03   p_joint 1.160714e-03

Joint ci ratio: 1.247024e-01	ci left: 1.088754e-03	ci right 1.234680e-03	k: 986	n:850000
Cons ci ratio: 1.262486e-01	ci left: 1.061404e-03	ci right 1.205560e-03	k: 962	n:850000
KS ci ratio: 4.220253e-02	ci left: 9.836127e-03	ci right 1.026134e-02	k: 8540	n:850000
FOXF2   850000 perm   457 sec   (1862 perm/sec)   p_kst 1.004706e-02   p_cons 1.131765e-03   p_joint 1.160000e-03

Joint ci ratio: 1.237035e-01	ci left: 1.094121e-03	ci right 1.239505e-03	k: 1002	n:860000
Cons ci ratio: 1.256629e-01	ci left: 1.059197e-03	ci right 1.202336e-03	k: 971	n:860000
KS ci ratio: 4.189645e-02	ci left: 9.865577e-03	ci right 1.028890e-02	k: 8665	n:860000
FOXF2   860000 perm   466 sec   (1845 perm/sec)   p_kst 1.007558e-02   p_cons 1.129070e-03   p_joint 1.165116e-03

Joint ci ratio: 1.230307e-01	ci left: 1.093798e-03	ci right 1.238292e-03	k: 1013	n:870000
Cons ci ratio: 1.248308e-01	ci left: 1.061497e-03	ci right 1.203927e-03	k: 984	n:870000
KS ci ratio: 4.168084e-02	ci left: 9.854546e-03	ci right 1.027516e-02	k: 8755	n:870000
FOXF2   870000 perm   475 sec   (1833 perm/sec)   p_kst 1.006322e-02   p_cons 1.131034e-03   p_joint 1.164368e-03

Joint ci ratio: 1.224885e-01	ci left: 1.091282e-03	ci right 1.234761e-03	k: 1022	n:880000
Cons ci ratio: 1.243272e-01	ci left: 1.058242e-03	ci right 1.199620e-03	k: 992	n:880000
KS ci ratio: 4.148747e-02	ci left: 9.834773e-03	ci right 1.025255e-02	k: 8837	n:880000
FOXF2   880000 perm   483 sec   (1821 perm/sec)   p_kst 1.004205e-02   p_cons 1.127273e-03   p_joint 1.161364e-03

Joint ci ratio: 1.214245e-01	ci left: 1.098628e-03	ci right 1.241729e-03	k: 1040	n:890000
Cons ci ratio: 1.236442e-01	ci left: 1.058328e-03	ci right 1.198884e-03	k: 1003	n:890000
KS ci ratio: 4.124775e-02	ci left: 9.838804e-03	ci right 1.025428e-02	k: 8940	n:890000
FOXF2   890000 perm   492 sec   (1808 perm/sec)   p_kst 1.004494e-02   p_cons 1.126966e-03   p_joint 1.168539e-03

Joint ci ratio: 1.208456e-01	ci left: 1.097196e-03	ci right 1.239379e-03	k: 1050	n:900000
Cons ci ratio: 1.230939e-01	ci left: 1.056260e-03	ci right 1.195871e-03	k: 1012	n:900000
KS ci ratio: 4.102818e-02	ci left: 9.835053e-03	ci right 1.024811e-02	k: 9036	n:900000
FOXF2   900000 perm   501 sec   (1797 perm/sec)   p_kst 1.004000e-02   p_cons 1.124444e-03   p_joint 1.166667e-03

Joint ci ratio: 1.201615e-01	ci left: 1.097928e-03	ci right 1.239344e-03	k: 1062	n:910000
Cons ci ratio: 1.226109e-01	ci left: 1.053174e-03	ci right 1.191791e-03	k: 1020	n:910000
KS ci ratio: 4.079178e-02	ci left: 9.841181e-03	ci right 1.025206e-02	k: 9141	n:910000
FOXF2   910000 perm   510 sec   (1785 perm/sec)   p_kst 1.004505e-02   p_cons 1.120879e-03   p_joint 1.167033e-03

Joint ci ratio: 1.195446e-01	ci left: 1.097592e-03	ci right 1.238188e-03	k: 1073	n:920000
Cons ci ratio: 1.221336e-01	ci left: 1.050156e-03	ci right 1.187799e-03	k: 1028	n:920000
KS ci ratio: 4.058604e-02	ci left: 9.834269e-03	ci right 1.024274e-02	k: 9234	n:920000
FOXF2   920000 perm   519 sec   (1773 perm/sec)   p_kst 1.003696e-02   p_cons 1.117391e-03   p_joint 1.166304e-03

Joint ci ratio: 1.186637e-01	ci left: 1.102482e-03	ci right 1.242590e-03	k: 1089	n:930000
Cons ci ratio: 1.213110e-01	ci left: 1.053459e-03	ci right 1.190539e-03	k: 1042	n:930000
KS ci ratio: 4.032882e-02	ci left: 9.854124e-03	ci right 1.026076e-02	k: 9352	n:930000
FOXF2   930000 perm   531 sec   (1752 perm/sec)   p_kst 1.005591e-02   p_cons 1.120430e-03   p_joint 1.170968e-03

Joint ci ratio: 1.179088e-01	ci left: 1.105206e-03	ci right 1.244705e-03	k: 1103	n:940000
Cons ci ratio: 1.206190e-01	ci left: 1.054632e-03	ci right 1.191025e-03	k: 1054	n:940000
KS ci ratio: 4.010852e-02	ci left: 9.857766e-03	ci right 1.026228e-02	k: 9455	n:940000
FOXF2   940000 perm   543 sec   (1732 perm/sec)   p_kst 1.005851e-02   p_cons 1.121277e-03   p_joint 1.173404e-03

Joint ci ratio: 1.171681e-01	ci left: 1.107876e-03	ci right 1.246773e-03	k: 1117	n:950000
Cons ci ratio: 1.202778e-01	ci left: 1.049656e-03	ci right 1.184994e-03	k: 1060	n:950000
KS ci ratio: 3.986442e-02	ci left: 9.874886e-03	ci right 1.027758e-02	k: 9571	n:950000
FOXF2   950000 perm   554 sec   (1713 perm/sec)   p_kst 1.007474e-02   p_cons 1.115789e-03   p_joint 1.175789e-03

Joint ci ratio: 1.166995e-01	ci left: 1.105437e-03	ci right 1.243435e-03	k: 1126	n:960000
Cons ci ratio: 1.196591e-01	ci left: 1.049836e-03	ci right 1.184453e-03	k: 1071	n:960000
KS ci ratio: 3.965575e-02	ci left: 9.876186e-03	ci right 1.027678e-02	k: 9672	n:960000
FOXF2   960000 perm   566 sec   (1696 perm/sec)   p_kst 1.007500e-02   p_cons 1.115625e-03   p_joint 1.172917e-03

Joint ci ratio: 1.161852e-01	ci left: 1.104049e-03	ci right 1.241225e-03	k: 1136	n:970000
Cons ci ratio: 1.191050e-01	ci left: 1.049015e-03	ci right 1.182859e-03	k: 1081	n:970000
KS ci ratio: 3.941774e-02	ci left: 9.893797e-03	ci right 1.029264e-02	k: 9789	n:970000
FOXF2   970000 perm   575 sec   (1686 perm/sec)   p_kst 1.009175e-02   p_cons 1.114433e-03   p_joint 1.171134e-03

Joint ci ratio: 1.156273e-01	ci left: 1.103683e-03	ci right 1.240110e-03	k: 1147	n:980000
Cons ci ratio: 1.186128e-01	ci left: 1.047221e-03	ci right 1.180246e-03	k: 1090	n:980000
KS ci ratio: 3.923401e-02	ci left: 9.885794e-03	ci right 1.028242e-02	k: 9881	n:980000
FOXF2   980000 perm   585 sec   (1676 perm/sec)   p_kst 1.008265e-02   p_cons 1.112245e-03   p_joint 1.170408e-03

Joint ci ratio: 1.146817e-01	ci left: 1.111174e-03	ci right 1.247327e-03	k: 1166	n:990000
Cons ci ratio: 1.177522e-01	ci left: 1.052327e-03	ci right 1.184963e-03	k: 1106	n:990000
KS ci ratio: 3.901727e-02	ci left: 9.895962e-03	ci right 1.029075e-02	k: 9991	n:990000
FOXF2   990000 perm   594 sec   (1667 perm/sec)   p_kst 1.009192e-02   p_cons 1.117172e-03   p_joint 1.177778e-03

Joint ci ratio: 1.141936e-01	ci left: 1.109776e-03	ci right 1.245140e-03	k: 1176	n:1000000
Cons ci ratio: 1.172240e-01	ci left: 1.051510e-03	ci right 1.183407e-03	k: 1116	n:1000000
KS ci ratio: 3.883516e-02	ci left: 9.890087e-03	ci right 1.028276e-02	k: 10085	n:1000000
FOXF2   1000000 perm   604 sec   (1657 perm/sec)   p_kst 1.008500e-02   p_cons 1.116000e-03   p_joint 1.176000e-03

Joint ci ratio: 1.135204e-01	ci left: 1.112254e-03	ci right 1.247068e-03	k: 1190	n:1010000
Cons ci ratio: 1.165993e-01	ci left: 1.052633e-03	ci right 1.183919e-03	k: 1128	n:1010000
KS ci ratio: 3.864791e-02	ci left: 9.888255e-03	ci right 1.027892e-02	k: 10183	n:1010000
FOXF2   1010000 perm   613 sec   (1646 perm/sec)   p_kst 1.008218e-02   p_cons 1.116832e-03   p_joint 1.178218e-03

Joint ci ratio: 1.131885e-01	ci left: 1.108018e-03	ci right 1.241899e-03	k: 1197	n:1020000
Cons ci ratio: 1.160354e-01	ci left: 1.052783e-03	ci right 1.183409e-03	k: 1139	n:1020000
KS ci ratio: 3.845390e-02	ci left: 9.891319e-03	ci right 1.028010e-02	k: 10286	n:1020000
FOXF2   1020000 perm   623 sec   (1636 perm/sec)   p_kst 1.008431e-02   p_cons 1.116667e-03   p_joint 1.173529e-03

Joint ci ratio: 1.128127e-01	ci left: 1.104808e-03	ci right 1.237829e-03	k: 1205	n:1030000
Cons ci ratio: 1.153293e-01	ci left: 1.055761e-03	ci right 1.185905e-03	k: 1153	n:1030000
KS ci ratio: 3.825906e-02	ci left: 9.896251e-03	ci right 1.028321e-02	k: 10391	n:1030000
FOXF2   1030000 perm   634 sec   (1626 perm/sec)   p_kst 1.008835e-02   p_cons 1.119417e-03   p_joint 1.169903e-03

Joint ci ratio: 1.124869e-01	ci left: 1.100726e-03	ci right 1.232847e-03	k: 1212	n:1040000
Cons ci ratio: 1.149318e-01	ci left: 1.053080e-03	ci right 1.182416e-03	k: 1161	n:1040000
KS ci ratio: 3.805251e-02	ci left: 9.908714e-03	ci right 1.029402e-02	k: 10504	n:1040000
FOXF2   1040000 perm   644 sec   (1616 perm/sec)   p_kst 1.010000e-02   p_cons 1.116346e-03   p_joint 1.165385e-03

Joint ci ratio: 1.121640e-01	ci left: 1.096722e-03	ci right 1.227960e-03	k: 1219	n:1050000
Cons ci ratio: 1.145874e-01	ci left: 1.049526e-03	ci right 1.178013e-03	k: 1168	n:1050000
KS ci ratio: 3.788352e-02	ci left: 9.903018e-03	ci right 1.028636e-02	k: 10598	n:1050000
FOXF2   1050000 perm   654 sec   (1604 perm/sec)   p_kst 1.009333e-02   p_cons 1.112381e-03   p_joint 1.160952e-03

Joint ci ratio: 1.117982e-01	ci left: 1.093711e-03	ci right 1.224134e-03	k: 1227	n:1060000
Cons ci ratio: 1.140520e-01	ci left: 1.049706e-03	ci right 1.177574e-03	k: 1179	n:1060000
KS ci ratio: 3.768474e-02	ci left: 9.914257e-03	ci right 1.029597e-02	k: 10710	n:1060000
FOXF2   1060000 perm   665 sec   (1594 perm/sec)   p_kst 1.010377e-02   p_cons 1.112264e-03   p_joint 1.157547e-03

Joint ci ratio: 1.113459e-01	ci left: 1.092574e-03	ci right 1.222300e-03	k: 1237	n:1070000
Cons ci ratio: 1.133813e-01	ci left: 1.052607e-03	ci right 1.180024e-03	k: 1193	n:1070000
KS ci ratio: 3.752409e-02	ci left: 9.906772e-03	ci right 1.028654e-02	k: 10802	n:1070000
FOXF2   1070000 perm   675 sec   (1585 perm/sec)   p_kst 1.009533e-02   p_cons 1.114953e-03   p_joint 1.156075e-03

Joint ci ratio: 1.109435e-01	ci left: 1.090560e-03	ci right 1.219547e-03	k: 1246	n:1080000
Cons ci ratio: 1.127222e-01	ci left: 1.055457e-03	ci right 1.182428e-03	k: 1207	n:1080000
KS ci ratio: 3.736375e-02	ci left: 9.900347e-03	ci right 1.027821e-02	k: 10895	n:1080000
FOXF2   1080000 perm   685 sec   (1576 perm/sec)   p_kst 1.008796e-02   p_cons 1.117593e-03   p_joint 1.153704e-03

Joint ci ratio: 1.104574e-01	ci left: 1.090367e-03	ci right 1.218730e-03	k: 1257	n:1090000
Cons ci ratio: 1.121204e-01	ci left: 1.057366e-03	ci right 1.183841e-03	k: 1220	n:1090000
KS ci ratio: 3.717811e-02	ci left: 9.908587e-03	ci right 1.028485e-02	k: 11004	n:1090000
FOXF2   1090000 perm   695 sec   (1567 perm/sec)   p_kst 1.009541e-02   p_cons 1.119266e-03   p_joint 1.153211e-03

Joint ci ratio: 1.098045e-01	ci left: 1.093715e-03	ci right 1.221662e-03	k: 1272	n:1100000
Cons ci ratio: 1.117096e-01	ci left: 1.055706e-03	ci right 1.181490e-03	k: 1229	n:1100000
KS ci ratio: 3.698513e-02	ci left: 9.922087e-03	ci right 1.029686e-02	k: 11119	n:1100000
FOXF2   1100000 perm   706 sec   (1559 perm/sec)   p_kst 1.010818e-02   p_cons 1.117273e-03   p_joint 1.156364e-03

Joint ci ratio: 1.089938e-01	ci left: 1.100511e-03	ci right 1.228241e-03	k: 1291	n:1110000
Cons ci ratio: 1.111238e-01	ci left: 1.057581e-03	ci right 1.182884e-03	k: 1242	n:1110000
KS ci ratio: 3.680505e-02	ci left: 9.929992e-03	ci right 1.030320e-02	k: 11228	n:1110000
FOXF2   1110000 perm   716 sec   (1549 perm/sec)   p_kst 1.011532e-02   p_cons 1.118919e-03   p_joint 1.163063e-03

Joint ci ratio: 1.086163e-01	ci left: 1.098502e-03	ci right 1.225529e-03	k: 1300	n:1120000
Cons ci ratio: 1.107681e-01	ci left: 1.055082e-03	ci right 1.179663e-03	k: 1250	n:1120000
KS ci ratio: 3.662921e-02	ci left: 9.936875e-03	ci right 1.030852e-02	k: 11336	n:1120000
FOXF2   1120000 perm   727 sec   (1540 perm/sec)   p_kst 1.012143e-02   p_cons 1.116071e-03   p_joint 1.160714e-03

Joint ci ratio: 1.082426e-01	ci left: 1.096529e-03	ci right 1.222864e-03	k: 1309	n:1130000
Cons ci ratio: 1.101969e-01	ci left: 1.056932e-03	ci right 1.181046e-03	k: 1263	n:1130000
KS ci ratio: 3.645587e-02	ci left: 9.943641e-03	ci right 1.031374e-02	k: 11444	n:1130000
FOXF2   1130000 perm   738 sec   (1530 perm/sec)   p_kst 1.012743e-02   p_cons 1.117699e-03   p_joint 1.158407e-03

Joint ci ratio: 1.077502e-01	ci left: 1.097153e-03	ci right 1.222948e-03	k: 1321	n:1140000
Cons ci ratio: 1.097636e-01	ci left: 1.056191e-03	ci right 1.179699e-03	k: 1273	n:1140000
KS ci ratio: 3.631991e-02	ci left: 9.931167e-03	ci right 1.029940e-02	k: 11530	n:1140000
FOXF2   1140000 perm   749 sec   (1522 perm/sec)   p_kst 1.011404e-02   p_cons 1.116667e-03   p_joint 1.158772e-03

Joint ci ratio: 1.073854e-01	ci left: 1.095228e-03	ci right 1.220350e-03	k: 1330	n:1150000
Cons ci ratio: 1.092502e-01	ci left: 1.057156e-03	ci right 1.180161e-03	k: 1285	n:1150000
KS ci ratio: 3.616817e-02	ci left: 9.928392e-03	ci right 1.029495e-02	k: 11627	n:1150000
FOXF2   1150000 perm   760 sec   (1514 perm/sec)   p_kst 1.011043e-02   p_cons 1.117391e-03   p_joint 1.156522e-03

Joint ci ratio: 1.069844e-01	ci left: 1.094175e-03	ci right 1.218682e-03	k: 1340	n:1160000
Cons ci ratio: 1.086184e-01	ci left: 1.060621e-03	ci right 1.183271e-03	k: 1300	n:1160000
KS ci ratio: 3.598578e-02	ci left: 9.943610e-03	ci right 1.030884e-02	k: 11745	n:1160000
FOXF2   1160000 perm   770 sec   (1506 perm/sec)   p_kst 1.012500e-02   p_cons 1.120690e-03   p_joint 1.155172e-03

Joint ci ratio: 1.065089e-01	ci left: 1.094806e-03	ci right 1.218796e-03	k: 1352	n:1170000
Cons ci ratio: 1.081622e-01	ci left: 1.060703e-03	ci right 1.182814e-03	k: 1311	n:1170000
KS ci ratio: 3.584581e-02	ci left: 9.936548e-03	ci right 1.030007e-02	k: 11837	n:1170000
FOXF2   1170000 perm   781 sec   (1498 perm/sec)   p_kst 1.011709e-02   p_cons 1.120513e-03   p_joint 1.155556e-03

Joint ci ratio: 1.060785e-01	ci left: 1.094602e-03	ci right 1.218037e-03	k: 1363	n:1180000
Cons ci ratio: 1.078340e-01	ci left: 1.058311e-03	ci right 1.179753e-03	k: 1319	n:1180000
KS ci ratio: 3.567426e-02	ci left: 9.948087e-03	ci right 1.031026e-02	k: 11951	n:1180000
FOXF2   1180000 perm   792 sec   (1490 perm/sec)   p_kst 1.012797e-02   p_cons 1.117797e-03   p_joint 1.155085e-03

Joint ci ratio: 1.058076e-01	ci left: 1.091130e-03	ci right 1.213839e-03	k: 1370	n:1190000
Cons ci ratio: 1.074684e-01	ci left: 1.056777e-03	ci right 1.177605e-03	k: 1328	n:1190000
KS ci ratio: 3.551852e-02	ci left: 9.951940e-03	ci right 1.031263e-02	k: 12056	n:1190000
FOXF2   1190000 perm   803 sec   (1482 perm/sec)   p_kst 1.013109e-02   p_cons 1.115966e-03   p_joint 1.151261e-03

Joint ci ratio: 1.055004e-01	ci left: 1.088528e-03	ci right 1.210567e-03	k: 1378	n:1200000
Cons ci ratio: 1.072268e-01	ci left: 1.052836e-03	ci right 1.172926e-03	k: 1334	n:1200000
KS ci ratio: 3.539128e-02	ci left: 9.940864e-03	ci right 1.029984e-02	k: 12143	n:1200000
FOXF2   1200000 perm   814 sec   (1474 perm/sec)   p_kst 1.011917e-02   p_cons 1.111667e-03   p_joint 1.148333e-03

Joint ci ratio: 1.052338e-01	ci left: 1.085164e-03	ci right 1.206500e-03	k: 1385	n:1210000
Cons ci ratio: 1.070269e-01	ci left: 1.048156e-03	ci right 1.167476e-03	k: 1339	n:1210000
KS ci ratio: 3.522178e-02	ci left: 9.954550e-03	ci right 1.031226e-02	k: 12260	n:1210000
FOXF2   1210000 perm   826 sec   (1466 perm/sec)   p_kst 1.013223e-02   p_cons 1.106612e-03   p_joint 1.144628e-03

Joint ci ratio: 1.048939e-01	ci left: 1.083453e-03	ci right 1.204181e-03	k: 1394	n:1220000
Cons ci ratio: 1.068280e-01	ci left: 1.043553e-03	ci right 1.162115e-03	k: 1344	n:1220000
KS ci ratio: 3.508765e-02	ci left: 9.949326e-03	ci right 1.030546e-02	k: 12354	n:1220000
FOXF2   1220000 perm   838 sec   (1456 perm/sec)   p_kst 1.012623e-02   p_cons 1.101639e-03   p_joint 1.142623e-03

Joint ci ratio: 1.044085e-01	ci left: 1.084937e-03	ci right 1.205237e-03	k: 1407	n:1230000
Cons ci ratio: 1.063546e-01	ci left: 1.044565e-03	ci right 1.162682e-03	k: 1356	n:1230000
KS ci ratio: 3.494227e-02	ci left: 9.951445e-03	ci right 1.030615e-02	k: 12457	n:1230000
FOXF2   1230000 perm   850 sec   (1447 perm/sec)   p_kst 1.012764e-02   p_cons 1.102439e-03   p_joint 1.143902e-03

Joint ci ratio: 1.040398e-01	ci left: 1.084042e-03	ci right 1.203792e-03	k: 1417	n:1240000
Cons ci ratio: 1.059261e-01	ci left: 1.044777e-03	ci right 1.162412e-03	k: 1367	n:1240000
KS ci ratio: 3.479309e-02	ci left: 9.956729e-03	ci right 1.031008e-02	k: 12564	n:1240000
FOXF2   1240000 perm   861 sec   (1440 perm/sec)   p_kst 1.013226e-02   p_cons 1.102419e-03   p_joint 1.142742e-03

Joint ci ratio: 1.036023e-01	ci left: 1.084720e-03	ci right 1.204011e-03	k: 1429	n:1250000
Cons ci ratio: 1.056563e-01	ci left: 1.041870e-03	ci right 1.158861e-03	k: 1374	n:1250000
KS ci ratio: 3.467208e-02	ci left: 9.946863e-03	ci right 1.029861e-02	k: 12652	n:1250000
FOXF2   1250000 perm   873 sec   (1432 perm/sec)   p_kst 1.012160e-02   p_cons 1.099200e-03   p_joint 1.143200e-03

Joint ci ratio: 1.030630e-01	ci left: 1.087708e-03	ci right 1.206667e-03	k: 1444	n:1260000
Cons ci ratio: 1.051603e-01	ci left: 1.043647e-03	ci right 1.160253e-03	k: 1387	n:1260000
KS ci ratio: 3.452632e-02	ci left: 9.952106e-03	ci right 1.030253e-02	k: 12759	n:1260000
FOXF2   1260000 perm   885 sec   (1424 perm/sec)   p_kst 1.012619e-02   p_cons 1.100794e-03   p_joint 1.146032e-03

Joint ci ratio: 1.027436e-01	ci left: 1.086048e-03	ci right 1.204435e-03	k: 1453	n:1270000
Cons ci ratio: 1.045592e-01	ci left: 1.047697e-03	ci right 1.164046e-03	k: 1403	n:1270000
KS ci ratio: 3.439724e-02	ci left: 9.948682e-03	ci right 1.029765e-02	k: 12855	n:1270000
FOXF2   1270000 perm   896 sec   (1417 perm/sec)   p_kst 1.012205e-02   p_cons 1.104724e-03   p_joint 1.144094e-03

Joint ci ratio: 1.022873e-01	ci left: 1.087459e-03	ci right 1.205442e-03	k: 1466	n:1280000
Cons ci ratio: 1.042257e-01	ci left: 1.046360e-03	ci right 1.162167e-03	k: 1412	n:1280000
KS ci ratio: 3.427495e-02	ci left: 9.942216e-03	ci right 1.028969e-02	k: 12947	n:1280000
FOXF2   1280000 perm   908 sec   (1409 perm/sec)   p_kst 1.011484e-02   p_cons 1.103125e-03   p_joint 1.145313e-03

Joint ci ratio: 1.019751e-01	ci left: 1.085828e-03	ci right 1.203252e-03	k: 1475	n:1290000
Cons ci ratio: 1.038224e-01	ci left: 1.046554e-03	ci right 1.161907e-03	k: 1423	n:1290000
KS ci ratio: 3.414072e-02	ci left: 9.943538e-03	ci right 1.028967e-02	k: 13049	n:1290000
FOXF2   1290000 perm   920 sec   (1402 perm/sec)   p_kst 1.011550e-02   p_cons 1.103101e-03   p_joint 1.143411e-03

Joint ci ratio: 1.013926e-01	ci left: 1.090220e-03	ci right 1.207406e-03	k: 1492	n:1300000
Cons ci ratio: 1.035321e-01	ci left: 1.044497e-03	ci right 1.159282e-03	k: 1431	n:1300000
KS ci ratio: 3.401329e-02	ci left: 9.941791e-03	ci right 1.028655e-02	k: 13147	n:1300000
FOXF2   1300000 perm   933 sec   (1394 perm/sec)   p_kst 1.011308e-02   p_cons 1.100769e-03   p_joint 1.147692e-03

Joint ci ratio: 1.007199e-01	ci left: 1.096779e-03	ci right 1.213842e-03	k: 1512	n:1310000
Cons ci ratio: 1.031725e-01	ci left: 1.043960e-03	ci right 1.158264e-03	k: 1441	n:1310000
KS ci ratio: 3.386791e-02	ci left: 9.951428e-03	ci right 1.029502e-02	k: 13260	n:1310000
FOXF2   1310000 perm   945 sec   (1386 perm/sec)   p_kst 1.012214e-02   p_cons 1.100000e-03   p_joint 1.154198e-03

Joint ci ratio: 1.004549e-01	ci left: 1.094378e-03	ci right 1.210859e-03	k: 1520	n:1320000
Cons ci ratio: 1.028167e-01	ci left: 1.043432e-03	ci right 1.157260e-03	k: 1451	n:1320000
KS ci ratio: 3.373457e-02	ci left: 9.954912e-03	ci right 1.029724e-02	k: 13365	n:1320000
FOXF2   1320000 perm   957 sec   (1379 perm/sec)   p_kst 1.012500e-02   p_cons 1.099242e-03   p_joint 1.151515e-03

Joint ci ratio: 9.996302e-02	ci left: 1.097145e-03	ci right 1.213315e-03	k: 1535	n:1330000
Cons ci ratio: 1.024294e-01	ci left: 1.043645e-03	ci right 1.157041e-03	k: 1462	n:1330000
KS ci ratio: 3.360405e-02	ci left: 9.957600e-03	ci right 1.029867e-02	k: 13469	n:1330000
FOXF2   1330000 perm   970 sec   (1372 perm/sec)   p_kst 1.012707e-02   p_cons 1.099248e-03   p_joint 1.154135e-03

Joint ci ratio: 9.947834e-02	ci left: 1.099872e-03	ci right 1.215734e-03	k: 1550	n:1340000
Cons ci ratio: 1.017704e-01	ci left: 1.049674e-03	ci right 1.162948e-03	k: 1481	n:1340000
KS ci ratio: 3.347379e-02	ci left: 9.960991e-03	ci right 1.030083e-02	k: 13574	n:1340000
FOXF2   1340000 perm   982 sec   (1365 perm/sec)   p_kst 1.012985e-02   p_cons 1.105224e-03   p_joint 1.156716e-03

Joint ci ratio: 9.915925e-02	ci left: 1.098949e-03	ci right 1.214320e-03	k: 1560	n:1350000
Cons ci ratio: 1.012591e-01	ci left: 1.052728e-03	ci right 1.165726e-03	k: 1496	n:1350000
KS ci ratio: 3.333396e-02	ci left: 9.970946e-03	ci right 1.030968e-02	k: 13688	n:1350000
FOXF2   1350000 perm   994 sec   (1358 perm/sec)   p_kst 1.013926e-02   p_cons 1.108148e-03   p_joint 1.155556e-03

Joint ci ratio: 9.890626e-02	ci left: 1.096605e-03	ci right 1.211419e-03	k: 1568	n:1360000
Cons ci ratio: 1.008222e-01	ci left: 1.054305e-03	ci right 1.166955e-03	k: 1509	n:1360000
KS ci ratio: 3.321532e-02	ci left: 9.969090e-03	ci right 1.030653e-02	k: 13786	n:1360000
FOXF2   1360000 perm   1007 sec   (1351 perm/sec)   p_kst 1.013676e-02   p_cons 1.109559e-03   p_joint 1.152941e-03

Joint ci ratio: 9.849899e-02	ci left: 1.097855e-03	ci right 1.212300e-03	k: 1581	n:1370000
Cons ci ratio: 1.004570e-01	ci left: 1.054436e-03	ci right 1.166668e-03	k: 1520	n:1370000
KS ci ratio: 3.309673e-02	ci left: 9.967986e-03	ci right 1.030416e-02	k: 13885	n:1370000
FOXF2   1370000 perm   1019 sec   (1344 perm/sec)   p_kst 1.013504e-02   p_cons 1.109489e-03   p_joint 1.154015e-03

Joint ci ratio: 9.815834e-02	ci left: 1.097675e-03	ci right 1.211682e-03	k: 1592	n:1380000
Cons ci ratio: 1.001612e-01	ci left: 1.053153e-03	ci right 1.164900e-03	k: 1529	n:1380000
KS ci ratio: 3.296512e-02	ci left: 9.975526e-03	ci right 1.031059e-02	k: 13996	n:1380000
FOXF2   1380000 perm   1032 sec   (1337 perm/sec)   p_kst 1.014203e-02   p_cons 1.107971e-03   p_joint 1.153623e-03

Joint ci ratio: 9.779069e-02	ci left: 1.098199e-03	ci right 1.211809e-03	k: 1604	n:1390000
Cons ci ratio: 9.980303e-02	ci left: 1.053292e-03	ci right 1.164630e-03	k: 1540	n:1390000
KS ci ratio: 3.283625e-02	ci left: 9.982246e-03	ci right 1.031620e-02	k: 14106	n:1390000
FOXF2   1390000 perm   1045 sec   (1331 perm/sec)   p_kst 1.014820e-02   p_cons 1.107914e-03   p_joint 1.153957e-03

Outputting figure to mutsig2_images.part000000000066/FOXF2.2_1343_1390000_0.010148_0.0011079_0.001154.png
                gene_name: FOXF2
               theta_stop: 0.100 
                    nperm: 1390000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0100 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.0011 
      ci_cons_bounds_left: 0.0011 
     ci_cons_bounds_right: 0.0012 
                  p_joint: 0.0012 
     ci_joint_bounds_left: 0.0011 
    ci_joint_bounds_right: 0.0012 

Current progress: 85 percent done.
FOXJ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.356558e-02	ci left: 8.868791e-01	ci right 8.990909e-01	k: 8931	n:10000
KS ci ratio: 1.709095e-02	ci left: 8.329712e-01	ci right 8.474300e-01	k: 8403	n:10000
FOXJ2   10000 perm   2 sec   (6152 perm/sec)   p_kst 8.403000e-01   p_cons 8.931000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FOXJ2.2_1765_10000_0.8403_0.8931_1.png
                gene_name: FOXJ2
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
FOXK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.399155e-01	ci left: 2.287554e-02	ci right 2.920465e-02	k: 259	n:10000
Cons ci ratio: 3.699811e-01	ci left: 9.049096e-03	ci right 1.324298e-02	k: 110	n:10000
KS ci ratio: 1.147477e-01	ci left: 9.847268e-02	ci right 1.105588e-01	k: 1044	n:10000
FOXK2   10000 perm   2 sec   (6130 perm/sec)   p_kst 1.044000e-01   p_cons 1.100000e-02   p_joint 2.590000e-02

Joint ci ratio: 1.942734e-01	ci left: 1.800953e-02	ci right 2.193178e-02	k: 398	n:20000
Cons ci ratio: 2.564170e-01	ci left: 1.006870e-02	ci right 1.307582e-02	k: 230	n:20000
KS ci ratio: 8.210895e-02	ci left: 9.808407e-02	ci right 1.065320e-01	k: 2045	n:20000
FOXK2   20000 perm   4 sec   (5173 perm/sec)   p_kst 1.022500e-01   p_cons 1.150000e-02   p_joint 1.990000e-02

Joint ci ratio: 1.371714e-01	ci left: 2.467957e-02	ci right 2.834624e-02	k: 794	n:30000
Cons ci ratio: 2.050674e-01	ci left: 1.079864e-02	ci right 1.329720e-02	k: 360	n:30000
KS ci ratio: 6.665566e-02	ci left: 9.991072e-02	ci right 1.068330e-01	k: 3100	n:30000
FOXK2   30000 perm   6 sec   (5008 perm/sec)   p_kst 1.033333e-01   p_cons 1.200000e-02   p_joint 2.646667e-02

Joint ci ratio: 1.328574e-01	ci left: 1.988322e-02	ci right 2.273686e-02	k: 851	n:40000
Cons ci ratio: 1.774699e-01	ci left: 1.097988e-02	ci right 1.314182e-02	k: 481	n:40000
KS ci ratio: 5.751389e-02	ci left: 1.010495e-01	ci right 1.070581e-01	k: 4161	n:40000
FOXK2   40000 perm   8 sec   (4877 perm/sec)   p_kst 1.040250e-01   p_cons 1.202500e-02   p_joint 2.127500e-02

Joint ci ratio: 8.292445e-02	ci left: 4.100325e-02	ci right 4.457008e-02	k: 2138	n:50000
Cons ci ratio: 1.578745e-01	ci left: 1.121774e-02	ci right 1.315952e-02	k: 608	n:50000
KS ci ratio: 5.121985e-02	ci left: 1.021678e-01	ci right 1.075582e-01	k: 5242	n:50000
FOXK2   50000 perm   11 sec   (4733 perm/sec)   p_kst 1.048400e-01   p_cons 1.216000e-02   p_joint 4.276000e-02

Joint ci ratio: 1.491373e-01	ci left: 1.053382e-02	ci right 1.224727e-02	k: 682	n:60000
Cons ci ratio: 1.459291e-01	ci left: 1.101555e-02	ci right 1.276547e-02	k: 712	n:60000
KS ci ratio: 4.641017e-02	ci left: 1.037950e-01	ci right 1.087431e-01	k: 6375	n:60000
FOXK2   60000 perm   13 sec   (4619 perm/sec)   p_kst 1.062500e-01   p_cons 1.186667e-02   p_joint 1.136667e-02

Joint ci ratio: 1.072032e-01	ci left: 1.773716e-02	ci right 1.976016e-02	k: 1311	n:70000
Cons ci ratio: 1.363398e-01	ci left: 1.087514e-02	ci right 1.248000e-02	k: 816	n:70000
KS ci ratio: 4.295674e-02	ci left: 1.040259e-01	ci right 1.086068e-01	k: 7441	n:70000
FOXK2   70000 perm   15 sec   (4518 perm/sec)   p_kst 1.063000e-01   p_cons 1.165714e-02   p_joint 1.872857e-02

Joint ci ratio: 1.001919e-01	ci left: 1.783350e-02	ci right 1.972663e-02	k: 1501	n:80000
Cons ci ratio: 1.278613e-01	ci left: 1.086951e-02	ci right 1.236622e-02	k: 928	n:80000
KS ci ratio: 4.014579e-02	ci left: 1.043457e-01	ci right 1.086329e-01	k: 8518	n:80000
FOXK2   80000 perm   18 sec   (4430 perm/sec)   p_kst 1.064750e-01   p_cons 1.160000e-02   p_joint 1.876250e-02

Joint ci ratio: 1.526079e-01	ci left: 6.722144e-03	ci right 7.843299e-03	k: 654	n:90000
Cons ci ratio: 1.202654e-01	ci left: 1.096456e-02	ci right 1.237828e-02	k: 1049	n:90000
KS ci ratio: 3.796715e-02	ci left: 1.038858e-01	ci right 1.079174e-01	k: 9530	n:90000
FOXK2   90000 perm   21 sec   (4350 perm/sec)   p_kst 1.058889e-01   p_cons 1.165556e-02   p_joint 7.266667e-03

Joint ci ratio: 1.462801e-01	ci left: 6.608218e-03	ci right 7.660674e-03	k: 712	n:100000
Cons ci ratio: 1.139293e-01	ci left: 1.103300e-02	ci right 1.237555e-02	k: 1169	n:100000
KS ci ratio: 3.594105e-02	ci left: 1.043961e-01	ci right 1.082268e-01	k: 10630	n:100000
FOXK2   100000 perm   23 sec   (4277 perm/sec)   p_kst 1.063000e-01   p_cons 1.169000e-02   p_joint 7.120000e-03

Joint ci ratio: 1.396791e-01	ci left: 6.612311e-03	ci right 7.613940e-03	k: 781	n:110000
Cons ci ratio: 1.081606e-01	ci left: 1.116136e-02	ci right 1.244639e-02	k: 1297	n:110000
KS ci ratio: 3.428339e-02	ci left: 1.044032e-01	ci right 1.080539e-01	k: 11684	n:110000
FOXK2   110000 perm   26 sec   (4200 perm/sec)   p_kst 1.062182e-01   p_cons 1.179091e-02   p_joint 7.100000e-03

Joint ci ratio: 1.330348e-01	ci left: 6.705239e-03	ci right 7.668808e-03	k: 861	n:120000
Cons ci ratio: 1.030417e-01	ci left: 1.130225e-02	ci right 1.253817e-02	k: 1429	n:120000
KS ci ratio: 3.287911e-02	ci left: 1.041644e-01	ci right 1.076547e-01	k: 12708	n:120000
FOXK2   120000 perm   29 sec   (4137 perm/sec)   p_kst 1.059000e-01   p_cons 1.190833e-02   p_joint 7.175000e-03

Joint ci ratio: 1.144309e-01	ci left: 8.433960e-03	ci right 9.465046e-03	k: 1162	n:130000
Cons ci ratio: 9.903706e-02	ci left: 1.131761e-02	ci right 1.250432e-02	k: 1547	n:130000
KS ci ratio: 3.157011e-02	ci left: 1.043468e-01	ci right 1.077015e-01	k: 13782	n:130000
FOXK2   130000 perm   32 sec   (4072 perm/sec)   p_kst 1.060154e-01   p_cons 1.190000e-02   p_joint 8.938462e-03

Joint ci ratio: 1.076728e-01	ci left: 8.873328e-03	ci right 9.890005e-03	k: 1312	n:140000
Cons ci ratio: 9.486248e-02	ci left: 1.147804e-02	ci right 1.262802e-02	k: 1686	n:140000
KS ci ratio: 3.045643e-02	ci left: 1.041934e-01	ci right 1.074229e-01	k: 14812	n:140000
FOXK2   140000 perm   35 sec   (4012 perm/sec)   p_kst 1.058000e-01   p_cons 1.204286e-02   p_joint 9.371429e-03

Joint ci ratio: 1.197479e-01	ci left: 6.668382e-03	ci right 7.524171e-03	k: 1063	n:150000
Cons ci ratio: 9.168440e-02	ci left: 1.148767e-02	ci right 1.259798e-02	k: 1805	n:150000
KS ci ratio: 2.944557e-02	ci left: 1.041087e-01	ci right 1.072266e-01	k: 15849	n:150000
FOXK2   150000 perm   38 sec   (3947 perm/sec)   p_kst 1.056600e-01   p_cons 1.203333e-02   p_joint 7.086667e-03

Joint ci ratio: 1.127825e-01	ci left: 7.070918e-03	ci right 7.922075e-03	k: 1198	n:160000
Cons ci ratio: 8.892269e-02	ci left: 1.146609e-02	ci right 1.253920e-02	k: 1919	n:160000
KS ci ratio: 2.852817e-02	ci left: 1.040423e-01	ci right 1.070595e-01	k: 16887	n:160000
FOXK2   160000 perm   41 sec   (3887 perm/sec)   p_kst 1.055438e-01   p_cons 1.199375e-02   p_joint 7.487500e-03

Joint ci ratio: 1.127129e-01	ci left: 6.666336e-03	ci right 7.468260e-03	k: 1200	n:170000
Cons ci ratio: 8.613957e-02	ci left: 1.151658e-02	ci right 1.255898e-02	k: 2045	n:170000
KS ci ratio: 2.768114e-02	ci left: 1.040552e-01	ci right 1.069818e-01	k: 17937	n:170000
FOXK2   170000 perm   44 sec   (3837 perm/sec)   p_kst 1.055118e-01   p_cons 1.202941e-02   p_joint 7.058824e-03

Joint ci ratio: 1.094787e-01	ci left: 6.684873e-03	ci right 7.464463e-03	k: 1272	n:180000
Cons ci ratio: 8.377828e-02	ci left: 1.151296e-02	ci right 1.252507e-02	k: 2162	n:180000
KS ci ratio: 2.689979e-02	ci left: 1.041065e-01	ci right 1.069506e-01	k: 18994	n:180000
FOXK2   180000 perm   48 sec   (3785 perm/sec)   p_kst 1.055222e-01   p_cons 1.201111e-02   p_joint 7.066667e-03

Joint ci ratio: 1.066676e-01	ci left: 6.681257e-03	ci right 7.439163e-03	k: 1340	n:190000
Cons ci ratio: 8.156490e-02	ci left: 1.152038e-02	ci right 1.250512e-02	k: 2281	n:190000
KS ci ratio: 2.619788e-02	ci left: 1.040331e-01	ci right 1.068000e-01	k: 20028	n:190000
FOXK2   190000 perm   51 sec   (3733 perm/sec)   p_kst 1.054105e-01   p_cons 1.200526e-02   p_joint 7.052632e-03

Joint ci ratio: 1.040253e-01	ci left: 6.683105e-03	ci right 7.421292e-03	k: 1409	n:200000
Cons ci ratio: 7.948466e-02	ci left: 1.153718e-02	ci right 1.249704e-02	k: 2402	n:200000
KS ci ratio: 2.554887e-02	ci left: 1.039630e-01	ci right 1.066585e-01	k: 21061	n:200000
FOXK2   200000 perm   54 sec   (3677 perm/sec)   p_kst 1.053050e-01   p_cons 1.201000e-02   p_joint 7.045000e-03

Joint ci ratio: 1.089334e-01	ci left: 5.794592e-03	ci right 6.466769e-03	k: 1286	n:210000
Cons ci ratio: 7.768057e-02	ci left: 1.151531e-02	ci right 1.245061e-02	k: 2515	n:210000
KS ci ratio: 2.490239e-02	ci left: 1.042271e-01	ci right 1.068600e-01	k: 22163	n:210000
FOXK2   210000 perm   58 sec   (3625 perm/sec)   p_kst 1.055381e-01   p_cons 1.197619e-02   p_joint 6.123810e-03

Joint ci ratio: 9.848329e-02	ci left: 6.797727e-03	ci right 7.506261e-03	k: 1572	n:220000
Cons ci ratio: 7.571756e-02	ci left: 1.158039e-02	ci right 1.249617e-02	k: 2647	n:220000
KS ci ratio: 2.432073e-02	ci left: 1.043278e-01	ci right 1.069008e-01	k: 23234	n:220000
FOXK2   220000 perm   62 sec   (3577 perm/sec)   p_kst 1.056091e-01   p_cons 1.203182e-02   p_joint 7.145455e-03

Outputting figure to mutsig2_images.part000000000066/FOXK2.2_2019_220000_0.10561_0.012032_0.0071455.png
                gene_name: FOXK2
               theta_stop: 0.098 
                    nperm: 220000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.0071 
     ci_joint_bounds_left: 0.0068 
    ci_joint_bounds_right: 0.0075 

Current progress: 89 percent done.
FOXL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.438058e-02	ci left: 1.699576e-01	ci right 1.850308e-01	k: 1774	n:10000
Cons ci ratio: 1.125355e-01	ci left: 1.020789e-01	ci right 1.143503e-01	k: 1081	n:10000
KS ci ratio: 1.146865e-01	ci left: 9.857012e-02	ci right 1.106613e-01	k: 1045	n:10000
FOXL1   10000 perm   2 sec   (6250 perm/sec)   p_kst 1.045000e-01   p_cons 1.081000e-01   p_joint 1.774000e-01

Joint ci ratio: 5.059497e-02	ci left: 2.249750e-01	ci right 2.367033e-01	k: 4616	n:20000
Cons ci ratio: 7.922764e-02	ci left: 1.047130e-01	ci right 1.134010e-01	k: 2180	n:20000
KS ci ratio: 8.215368e-02	ci left: 9.798590e-02	ci right 1.064301e-01	k: 2043	n:20000
FOXL1   20000 perm   4 sec   (5524 perm/sec)   p_kst 1.021500e-01   p_cons 1.090000e-01   p_joint 2.308000e-01

Outputting figure to mutsig2_images.part000000000066/FOXL1.2_1042_20000_0.10215_0.109_0.2308.png
                gene_name: FOXL1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 91 percent done.
FOXN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.204321e-02	ci left: 5.897180e-01	ci right 6.090241e-01	k: 5994	n:10000
Cons ci ratio: 4.834243e-02	ci left: 3.869933e-01	ci right 4.062670e-01	k: 3966	n:10000
KS ci ratio: 7.122053e-02	ci left: 2.241507e-01	ci right 2.408054e-01	k: 2324	n:10000
FOXN4   10000 perm   2 sec   (6420 perm/sec)   p_kst 2.324000e-01   p_cons 3.966000e-01   p_joint 5.994000e-01

Outputting figure to mutsig2_images.part000000000066/FOXN4.2_1590_10000_0.2324_0.3966_0.5994.png
                gene_name: FOXN4
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 93 percent done.
FOXO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.984796e-02	ci left: 1.863882e-01	ci right 2.019904e-01	k: 1941	n:10000
KS ci ratio: 2.161163e-02	ci left: 7.584861e-01	ci right 7.751582e-01	k: 7669	n:10000
FOXO3   10000 perm   2 sec   (6191 perm/sec)   p_kst 7.669000e-01   p_cons 1.941000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000066/FOXO3.2_2030_10000_0.7669_0.1941_1.png
                gene_name: FOXO3
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
FOXP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.418105e-03	ci left: 9.408695e-01	ci right 9.498689e-01	k: 9455	n:10000
Cons ci ratio: 3.281605e-02	ci left: 5.781784e-01	ci right 5.975704e-01	k: 5879	n:10000
KS ci ratio: 4.252495e-02	ci left: 4.494958e-01	ci right 4.691280e-01	k: 4593	n:10000
FOXP3   10000 perm   2 sec   (6445 perm/sec)   p_kst 4.593000e-01   p_cons 5.879000e-01   p_joint 9.455000e-01

Outputting figure to mutsig2_images.part000000000066/FOXP3.2_1340_10000_0.4593_0.5879_0.9455.png
                gene_name: FOXP3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 96 percent done.
FOXP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.008344e-02	ci left: 6.197470e-01	ci right 6.387777e-01	k: 6293	n:10000
Cons ci ratio: 2.482671e-02	ci left: 7.047290e-01	ci right 7.225464e-01	k: 7137	n:10000
KS ci ratio: 1.111015e-01	ci left: 1.045169e-01	ci right 1.169109e-01	k: 1106	n:10000
FOXP4   10000 perm   2 sec   (5944 perm/sec)   p_kst 1.106000e-01   p_cons 7.137000e-01   p_joint 6.293000e-01

Joint ci ratio: 3.491155e-02	ci left: 3.798429e-01	ci right 3.933900e-01	k: 7732	n:20000
Cons ci ratio: 1.758346e-02	ci left: 7.067254e-01	ci right 7.193126e-01	k: 14261	n:20000
KS ci ratio: 7.967941e-02	ci left: 1.036324e-01	ci right 1.122820e-01	k: 2158	n:20000
FOXP4   20000 perm   4 sec   (5254 perm/sec)   p_kst 1.079000e-01   p_cons 7.130500e-01   p_joint 3.866000e-01

Outputting figure to mutsig2_images.part000000000066/FOXP4.2_2107_20000_0.1079_0.71305_0.3866.png
                gene_name: FOXP4
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 98 percent done.
FOXR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.025312e-02	ci left: 3.686820e-01	ci right 3.877890e-01	k: 3782	n:10000
Cons ci ratio: 5.845539e-02	ci left: 3.010409e-01	ci right 3.192698e-01	k: 3101	n:10000
KS ci ratio: 2.573434e-02	ci left: 6.897011e-01	ci right 7.077830e-01	k: 6988	n:10000
FOXR1   10000 perm   2 sec   (6492 perm/sec)   p_kst 6.988000e-01   p_cons 3.101000e-01   p_joint 3.782000e-01

Outputting figure to mutsig2_images.part000000000066/FOXR1.2_903_10000_0.6988_0.3101_0.3782.png
                gene_name: FOXR1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000066
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 66 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1647>
Subject: Job 9893944: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1647>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000067> was used as the working directory.
Started at Sat Oct  6 00:08:58 2012
Results reported at Sat Oct  6 00:18:00 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000067.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000067.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 67  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000067.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    531.65 sec.
    Max Memory :      3521 MB
    Max Swap   :      5907 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
67
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 67
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 67: processing genes 5951 - 6040
Calculating significance of each gene.
Using projection method.
5951	FOXRED2	6.909681e-01
5952	FOXS1	8.594407e-01
5953	FPGS	1
5954	FPGT	9.900704e-02
5955	FPR1	3.779142e-01
5956	FPR2	9.559824e-03
5957	FPR3	7.173750e-02
5958	FRA10AC1	7.666666e-01
5959	FRAS1	9.406005e-01
5960	FREM1	5.220726e-01
5961	FREM2	5.135139e-04
5962	FRG1	1
5963	FRG2	6.984030e-01
5964	FRG2B	1
5965	FRG2C	1
5966	FRK	5.078983e-01
5967	FRMD1	8.975418e-01
5968	FRMD3	6.235253e-01
5969	FRMD4A	7.132358e-01
5970	FRMD4B	9.082924e-01
5971	FRMD5	9.395537e-01
5972	FRMD6	8.797713e-01
5973	FRMD7	9.253507e-01
5974	FRMD8	1
5975	FRMPD1	4.095359e-02
5976	FRMPD2	1.969097e-02
5977	FRMPD4	4.403820e-01
5978	FRRS1	3.338803e-01
5979	FRS2	5.354208e-01
5980	FRS3	4.648346e-01
5981	FRY	6.500770e-01
5982	FRYL	4.490106e-01
5983	FRZB	5.468130e-01
5984	FSCB	4.351539e-02
5985	FSCN1	1
5986	FSCN2	1
5987	FSCN3	6.608203e-01
5988	FSD1	2.844818e-01
5989	FSD2	6.573532e-01
5990	FSHB	5.366754e-02
5991	FSHR	1.381642e-02
5992	FSIP1	4.361580e-01
5993	FST	3.781625e-01
5994	FSTL1	1.340800e-03
5995	FSTL3	1
5996	FSTL4	4.294998e-01
5997	FSTL5	1.651884e-04
5998	FTCD	4.394221e-01
5999	FTH1	1
6000/18030 6000	FTHL17	3.048009e-01
6001	FTL	1
6002	FTMT	3.695024e-02
6003	FTO	6.270312e-02
6004	FTSJ1	1
6005	FTSJ2	4.962573e-01
6006	FTSJ3	6.140583e-01
6007	FTSJD1	7.622718e-01
6008	FTSJD2	4.015519e-01
6009	FUBP1	7.063389e-01
6010	FUBP3	9.614282e-01
6011	FUCA1	6.893044e-01
6012	FUCA2	1
6013	FUK	9.932223e-01
6014	FUNDC1	7.840712e-02
6015	FUNDC2	2.930624e-01
In gene FURIN the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 2227    n = 1	mu =   4.60e-07
6016	FURIN	5.908594e-01
6017	FUS	1
6018	FUT1	4.799115e-01
6019	FUT10	7.659054e-01
6020	FUT11	9.674858e-01
6021	FUT2	7.958315e-01
6022	FUT3	1.879944e-01
6023	FUT4	1
6024	FUT5	1
6025	FUT6	8.318412e-01
6026	FUT7	1
6027	FUT8	7.012727e-01
6028	FUT9	1.567199e-02
6029	FUZ	1
6030	FXC1	1
6031	FXN	4.019089e-01
6032	FXR1	1.038464e-01
6033	FXR2	3.968894e-02
6034	FXYD1	1
6035	FXYD2	1
6036	FXYD3	1
6037	FXYD4	3.125472e-01
6038	FXYD5	2.056776e-01
6039	FXYD6	3.879082e-02
6040	FXYD7	1
Done

Running MutSig 2:
Scatter job 67: processing genes 5951 - 6040
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FREM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
Cons ci ratio: 1.103741e-01	ci left: 1.057850e-01	ci right 1.182420e-01	k: 1119	n:10000
KS ci ratio: 1.807872e-01	ci left: 4.082863e-02	ci right 4.903911e-02	k: 448	n:10000
FREM2   10000 perm   4 sec   (2570 perm/sec)   p_kst 4.480000e-02   p_cons 1.119000e-01   p_joint 2.130000e-02

Joint ci ratio: 1.266618e-01	ci left: 4.279850e-02	ci right 4.863449e-02	k: 913	n:20000
Cons ci ratio: 7.961742e-02	ci left: 1.037797e-01	ci right 1.124346e-01	k: 2161	n:20000
KS ci ratio: 1.333766e-01	ci left: 3.863255e-02	ci right 4.420178e-02	k: 827	n:20000
FREM2   20000 perm   11 sec   (1820 perm/sec)   p_kst 4.135000e-02   p_cons 1.080500e-01   p_joint 4.565000e-02

Joint ci ratio: 1.266021e-01	ci left: 2.900300e-02	ci right 3.295519e-02	k: 928	n:30000
Cons ci ratio: 6.526755e-02	ci left: 1.038193e-01	ci right 1.108570e-01	k: 3219	n:30000
KS ci ratio: 1.102047e-01	ci left: 3.823235e-02	ci right 4.272387e-02	k: 1213	n:30000
FREM2   30000 perm   15 sec   (2033 perm/sec)   p_kst 4.043333e-02   p_cons 1.073000e-01   p_joint 3.093333e-02

Joint ci ratio: 9.677747e-02	ci left: 3.749008e-02	ci right 4.132716e-02	k: 1575	n:40000
Cons ci ratio: 5.600132e-02	ci left: 1.060607e-01	ci right 1.121962e-01	k: 4364	n:40000
KS ci ratio: 9.636447e-02	ci left: 3.780753e-02	ci right 4.165966e-02	k: 1588	n:40000
FREM2   40000 perm   19 sec   (2159 perm/sec)   p_kst 3.970000e-02   p_cons 1.091000e-01   p_joint 3.937500e-02

Outputting figure to mutsig2_images.part000000000067/FREM2.29_9606_40000_0.0397_0.1091_0.039375.png
                gene_name: FREM2
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.041 

Current progress: 2 percent done.
FRY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.135385e-02	ci left: 6.001585e-01	ci right 6.193775e-01	k: 6098	n:10000
Cons ci ratio: 1.884446e-02	ci left: 8.045063e-01	ci right 8.199113e-01	k: 8123	n:10000
KS ci ratio: 3.622611e-02	ci left: 5.294702e-01	ci right 5.491069e-01	k: 5393	n:10000
FRY   10000 perm   3 sec   (3255 perm/sec)   p_kst 5.393000e-01   p_cons 8.123000e-01   p_joint 6.098000e-01

Outputting figure to mutsig2_images.part000000000067/FRY.25_9286_10000_0.5393_0.8123_0.6098.png
                gene_name: FRY
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 4 percent done.
FRYL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.711640e-02	ci left: 8.325641e-01	ci right 8.470374e-01	k: 8399	n:10000
Cons ci ratio: 3.849500e-02	ci left: 4.991503e-01	ci right 5.188444e-01	k: 5090	n:10000
KS ci ratio: 2.952506e-02	ci left: 6.284917e-01	ci right 6.474279e-01	k: 6380	n:10000
FRYL   10000 perm   3 sec   (3299 perm/sec)   p_kst 6.380000e-01   p_cons 5.090000e-01   p_joint 8.399000e-01

Outputting figure to mutsig2_images.part000000000067/FRYL.19_9286_10000_0.638_0.509_0.8399.png
                gene_name: FRYL
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 5 percent done.
FRMPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.343604e-02	ci left: 5.690509e-01	ci right 5.885032e-01	k: 5788	n:10000
Cons ci ratio: 1.673957e-02	ci left: 8.385712e-01	ci right 8.528268e-01	k: 8458	n:10000
KS ci ratio: 4.726880e-02	ci left: 3.977478e-01	ci right 4.171061e-01	k: 4074	n:10000
FRMPD1   10000 perm   2 sec   (4176 perm/sec)   p_kst 4.074000e-01   p_cons 8.458000e-01   p_joint 5.788000e-01

Outputting figure to mutsig2_images.part000000000067/FRMPD1.18_4797_10000_0.4074_0.8458_0.5788.png
                gene_name: FRMPD1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 7 percent done.
FRAS1
Processing conservation and coverage...
80% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.144526e-02	ci left: 4.622748e-01	ci right 4.819415e-01	k: 4721	n:10000
Cons ci ratio: 4.006591e-02	ci left: 4.791570e-01	ci right 4.988495e-01	k: 4890	n:10000
KS ci ratio: 6.029456e-02	ci left: 2.880544e-01	ci right 3.060640e-01	k: 2970	n:10000
FRAS1   10000 perm   3 sec   (2988 perm/sec)   p_kst 2.970000e-01   p_cons 4.890000e-01   p_joint 4.721000e-01

Outputting figure to mutsig2_images.part000000000067/FRAS1.16_12410_10000_0.297_0.489_0.4721.png
                gene_name: FRAS1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 9 percent done.
FREM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.927397e-02	ci left: 3.779354e-01	ci right 3.971302e-01	k: 3875	n:10000
Cons ci ratio: 1.056010e-01	ci left: 1.146691e-01	ci right 1.275526e-01	k: 1210	n:10000
KS ci ratio: 2.327139e-02	ci left: 7.306776e-01	ci right 7.479828e-01	k: 7394	n:10000
FREM1   10000 perm   3 sec   (3438 perm/sec)   p_kst 7.394000e-01   p_cons 1.210000e-01   p_joint 3.875000e-01

Joint ci ratio: 4.269107e-02	ci left: 2.901753e-01	ci right 3.028839e-01	k: 5930	n:20000
Cons ci ratio: 7.365539e-02	ci left: 1.194622e-01	ci right 1.286474e-01	k: 2480	n:20000
KS ci ratio: 1.659862e-02	ci left: 7.298823e-01	ci right 7.421490e-01	k: 14721	n:20000
FREM1   20000 perm   7 sec   (3011 perm/sec)   p_kst 7.360500e-01   p_cons 1.240000e-01   p_joint 2.965000e-01

Outputting figure to mutsig2_images.part000000000067/FREM1.16_6734_20000_0.73605_0.124_0.2965.png
                gene_name: FREM1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 11 percent done.
FSTL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.042832e-02	ci left: 4.746606e-01	ci right 4.943484e-01	k: 4845	n:10000
Cons ci ratio: 6.437385e-02	ci left: 2.617124e-01	ci right 2.792215e-01	k: 2704	n:10000
KS ci ratio: 4.012206e-02	ci left: 4.784575e-01	ci right 4.981493e-01	k: 4883	n:10000
FSTL5   10000 perm   2 sec   (4665 perm/sec)   p_kst 4.883000e-01   p_cons 2.704000e-01   p_joint 4.845000e-01

Outputting figure to mutsig2_images.part000000000067/FSTL5.14_2604_10000_0.4883_0.2704_0.4845.png
                gene_name: FSTL5
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 13 percent done.
FRMPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.260160e-01	ci left: 2.589329e-02	ci right 3.258470e-02	k: 291	n:10000
Cons ci ratio: 1.123029e-01	ci left: 1.024689e-01	ci right 1.147601e-01	k: 1085	n:10000
KS ci ratio: 1.687404e-01	ci left: 4.686539e-02	ci right 5.559839e-02	k: 511	n:10000
FRMPD2   10000 perm   2 sec   (4311 perm/sec)   p_kst 5.110000e-02   p_cons 1.085000e-01   p_joint 2.910000e-02

Joint ci ratio: 1.337986e-01	ci left: 3.839058e-02	ci right 4.394383e-02	k: 822	n:20000
Cons ci ratio: 7.896375e-02	ci left: 1.053517e-01	ci right 1.140622e-01	k: 2193	n:20000
KS ci ratio: 1.184089e-01	ci left: 4.886604e-02	ci right 5.506504e-02	k: 1038	n:20000
FRMPD2   20000 perm   5 sec   (3771 perm/sec)   p_kst 5.190000e-02   p_cons 1.096500e-01   p_joint 4.110000e-02

Joint ci ratio: 9.393151e-02	ci left: 5.228377e-02	ci right 5.746953e-02	k: 1645	n:30000
Cons ci ratio: 6.439714e-02	ci left: 1.063820e-01	ci right 1.134937e-01	k: 3297	n:30000
KS ci ratio: 9.699337e-02	ci left: 4.912358e-02	ci right 5.416370e-02	k: 1548	n:30000
FRMPD2   30000 perm   8 sec   (3751 perm/sec)   p_kst 5.160000e-02   p_cons 1.099000e-01   p_joint 5.483333e-02

Outputting figure to mutsig2_images.part000000000067/FRMPD2.10_4046_30000_0.0516_0.1099_0.054833.png
                gene_name: FRMPD2
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.057 

Current progress: 15 percent done.
FSCB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.511849e-02	ci left: 6.998865e-01	ci right 7.177916e-01	k: 7089	n:10000
Cons ci ratio: 4.717107e-02	ci left: 3.987439e-01	ci right 4.181095e-01	k: 4084	n:10000
KS ci ratio: 3.259309e-02	ci left: 5.814892e-01	ci right 6.008577e-01	k: 5912	n:10000
FSCB   10000 perm   2 sec   (5124 perm/sec)   p_kst 5.912000e-01   p_cons 4.084000e-01   p_joint 7.089000e-01

Outputting figure to mutsig2_images.part000000000067/FSCB.9_2482_10000_0.5912_0.4084_0.7089.png
                gene_name: FSCB
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 16 percent done.
FRMD4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.735644e-02	ci left: 2.444035e-01	ci right 2.615407e-01	k: 2529	n:10000
Cons ci ratio: 6.859028e-02	ci left: 2.376826e-01	ci right 2.546655e-01	k: 2461	n:10000
KS ci ratio: 6.074508e-02	ci left: 2.849825e-01	ci right 3.029377e-01	k: 2939	n:10000
FRMD4A   10000 perm   2 sec   (4390 perm/sec)   p_kst 2.939000e-01   p_cons 2.461000e-01   p_joint 2.529000e-01

Outputting figure to mutsig2_images.part000000000067/FRMD4A.7_3212_10000_0.2939_0.2461_0.2529.png
                gene_name: FRMD4A
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 18 percent done.
FRMPD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.440648e-02	ci left: 2.615144e-01	ci right 2.790196e-01	k: 2702	n:10000
Cons ci ratio: 9.936231e-03	ci left: 9.348550e-01	ci right 9.442869e-01	k: 9397	n:10000
KS ci ratio: 1.168825e-01	ci left: 9.516088e-02	ci right 1.070726e-01	k: 1010	n:10000
FRMPD4   10000 perm   2 sec   (4813 perm/sec)   p_kst 1.010000e-01   p_cons 9.397000e-01   p_joint 2.702000e-01

Joint ci ratio: 5.601473e-02	ci left: 1.911609e-01	ci right 2.022274e-01	k: 3933	n:20000
Cons ci ratio: 7.008286e-03	ci left: 9.365679e-01	ci right 9.432035e-01	k: 18799	n:20000
KS ci ratio: 8.454669e-02	ci left: 9.293210e-02	ci right 1.011855e-01	k: 1940	n:20000
FRMPD4   20000 perm   5 sec   (4113 perm/sec)   p_kst 9.700000e-02   p_cons 9.399500e-01   p_joint 1.966500e-01

Outputting figure to mutsig2_images.part000000000067/FRMPD4.7_4037_20000_0.097_0.93995_0.19665.png
                gene_name: FRMPD4
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 20 percent done.
FSHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.621708e-02	ci left: 1.638637e-01	ci right 1.787283e-01	k: 1712	n:10000
Cons ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
KS ci ratio: 2.585051e-02	ci left: 6.877856e-01	ci right 7.058996e-01	k: 6969	n:10000
FSHR   10000 perm   2 sec   (4960 perm/sec)   p_kst 6.969000e-01   p_cons 4.660000e-02   p_joint 1.712000e-01

Joint ci ratio: 6.698357e-02	ci left: 1.412809e-01	ci right 1.511222e-01	k: 2923	n:20000
Cons ci ratio: 1.282881e-01	ci left: 4.173208e-02	ci right 4.750125e-02	k: 891	n:20000
KS ci ratio: 1.757057e-02	ci left: 7.070273e-01	ci right 7.196106e-01	k: 14267	n:20000
FSHR   20000 perm   4 sec   (4492 perm/sec)   p_kst 7.133500e-01   p_cons 4.455000e-02   p_joint 1.461500e-01

Joint ci ratio: 5.541178e-02	ci left: 1.389908e-01	ci right 1.469452e-01	k: 4288	n:30000
Cons ci ratio: 1.038171e-01	ci left: 4.300671e-02	ci right 4.774851e-02	k: 1360	n:30000
KS ci ratio: 1.435285e-02	ci left: 7.080116e-01	ci right 7.182805e-01	k: 21395	n:30000
FSHR   30000 perm   7 sec   (4195 perm/sec)   p_kst 7.131667e-01   p_cons 4.533333e-02   p_joint 1.429333e-01

Joint ci ratio: 4.639796e-02	ci left: 1.479003e-01	ci right 1.549504e-01	k: 6056	n:40000
Cons ci ratio: 8.941077e-02	ci left: 4.379634e-02	ci right 4.791992e-02	k: 1833	n:40000
KS ci ratio: 1.243428e-02	ci left: 7.085642e-01	ci right 7.174549e-01	k: 28521	n:40000
FSHR   40000 perm   10 sec   (4121 perm/sec)   p_kst 7.130250e-01   p_cons 4.582500e-02   p_joint 1.514000e-01

Outputting figure to mutsig2_images.part000000000067/FSHR.7_2128_40000_0.71303_0.045825_0.1514.png
                gene_name: FSHR
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 22 percent done.
FXR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.721421e-02	ci left: 5.160570e-01	ci right 5.357279e-01	k: 5259	n:10000
KS ci ratio: 1.635946e-02	ci left: 8.445820e-01	ci right 8.586125e-01	k: 8517	n:10000
FXR2   10000 perm   2 sec   (5468 perm/sec)   p_kst 8.517000e-01   p_cons 5.259000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FXR2.7_2091_10000_0.8517_0.5259_1.png
                gene_name: FXR2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
FPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.079150e-02	ci left: 3.637086e-01	ci right 3.827653e-01	k: 3732	n:10000
KS ci ratio: 2.208266e-02	ci left: 7.505939e-01	ci right 7.674550e-01	k: 7591	n:10000
FPR2   10000 perm   2 sec   (5253 perm/sec)   p_kst 7.591000e-01   p_cons 3.732000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FPR2.6_1060_10000_0.7591_0.3732_1.png
                gene_name: FPR2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
FSTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.128764e-02	ci left: 4.641722e-01	ci right 4.838429e-01	k: 4740	n:10000
Cons ci ratio: 2.375459e-02	ci left: 7.225963e-01	ci right 7.400688e-01	k: 7314	n:10000
KS ci ratio: 5.307046e-02	ci left: 3.435278e-01	ci right 3.623579e-01	k: 3529	n:10000
FSTL1   10000 perm   2 sec   (5917 perm/sec)   p_kst 3.529000e-01   p_cons 7.314000e-01   p_joint 4.740000e-01

Outputting figure to mutsig2_images.part000000000067/FSTL1.6_967_10000_0.3529_0.7314_0.474.png
                gene_name: FSTL1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 27 percent done.
FTSJD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.673202e-02	ci left: 5.225625e-01	ci right 5.422186e-01	k: 5324	n:10000
Cons ci ratio: 5.209730e-02	ci left: 3.519757e-01	ci right 3.709051e-01	k: 3614	n:10000
KS ci ratio: 5.694681e-02	ci left: 3.122498e-01	ci right 3.306543e-01	k: 3214	n:10000
FTSJD2   10000 perm   2 sec   (5341 perm/sec)   p_kst 3.214000e-01   p_cons 3.614000e-01   p_joint 5.324000e-01

Outputting figure to mutsig2_images.part000000000067/FTSJD2.6_2600_10000_0.3214_0.3614_0.5324.png
                gene_name: FTSJD2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 29 percent done.
FPGT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.911865e-02	ci left: 3.794282e-01	ci right 3.986365e-01	k: 3890	n:10000
Cons ci ratio: 6.935644e-02	ci left: 2.336317e-01	ci right 2.505188e-01	k: 2420	n:10000
KS ci ratio: 5.350308e-02	ci left: 3.398515e-01	ci right 3.586364e-01	k: 3492	n:10000
FPGT   10000 perm   2 sec   (5308 perm/sec)   p_kst 3.492000e-01   p_cons 2.420000e-01   p_joint 3.890000e-01

Outputting figure to mutsig2_images.part000000000067/FPGT.5_1801_10000_0.3492_0.242_0.389.png
                gene_name: FPGT
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 31 percent done.
FRRS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.581263e-02	ci left: 5.351780e-01	ci right 5.547957e-01	k: 5450	n:10000
Cons ci ratio: 4.790096e-02	ci left: 3.913742e-01	ci right 4.106835e-01	k: 4010	n:10000
KS ci ratio: 4.139542e-02	ci left: 4.628739e-01	ci right 4.825420e-01	k: 4727	n:10000
FRRS1   10000 perm   2 sec   (6095 perm/sec)   p_kst 4.727000e-01   p_cons 4.010000e-01   p_joint 5.450000e-01

Outputting figure to mutsig2_images.part000000000067/FRRS1.5_1941_10000_0.4727_0.401_0.545.png
                gene_name: FRRS1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 33 percent done.
FTO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.342919e-02	ci left: 5.691511e-01	ci right 5.886029e-01	k: 5789	n:10000
Cons ci ratio: 4.325118e-02	ci left: 4.411130e-01	ci right 4.607156e-01	k: 4509	n:10000
KS ci ratio: 4.252495e-02	ci left: 4.494958e-01	ci right 4.691280e-01	k: 4593	n:10000
FTO   10000 perm   2 sec   (4735 perm/sec)   p_kst 4.593000e-01   p_cons 4.509000e-01   p_joint 5.789000e-01

Outputting figure to mutsig2_images.part000000000067/FTO.5_1554_10000_0.4593_0.4509_0.5789.png
                gene_name: FTO
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 35 percent done.
FUT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.092251e-02	ci left: 2.256317e-01	ci right 2.423235e-01	k: 2339	n:10000
Cons ci ratio: 2.160559e-02	ci left: 7.585873e-01	ci right 7.752569e-01	k: 7670	n:10000
KS ci ratio: 1.539269e-01	ci left: 5.619485e-02	ci right 6.566293e-02	k: 608	n:10000
FUT9   10000 perm   2 sec   (4957 perm/sec)   p_kst 6.080000e-02   p_cons 7.670000e-01   p_joint 2.339000e-01

Joint ci ratio: 7.655473e-02	ci left: 1.114456e-01	ci right 1.203665e-01	k: 2317	n:20000
Cons ci ratio: 1.540777e-02	ci left: 7.580016e-01	ci right 7.698216e-01	k: 15279	n:20000
KS ci ratio: 1.085134e-01	ci left: 5.791700e-02	ci right 6.461125e-02	k: 1224	n:20000
FUT9   20000 perm   5 sec   (4271 perm/sec)   p_kst 6.120000e-02   p_cons 7.639500e-01   p_joint 1.158500e-01

Joint ci ratio: 5.545705e-02	ci left: 1.387931e-01	ci right 1.467429e-01	k: 4282	n:30000
Cons ci ratio: 1.251587e-02	ci left: 7.609655e-01	ci right 7.705830e-01	k: 22974	n:30000
KS ci ratio: 8.684030e-02	ci left: 6.083153e-02	ci right 6.638669e-02	k: 1907	n:30000
FUT9   30000 perm   7 sec   (4299 perm/sec)   p_kst 6.356667e-02   p_cons 7.658000e-01   p_joint 1.427333e-01

Outputting figure to mutsig2_images.part000000000067/FUT9.5_1084_30000_0.063567_0.7658_0.14273.png
                gene_name: FUT9
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 36 percent done.
FXR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.952695e-02	ci left: 2.327426e-01	ci right 2.496084e-01	k: 2411	n:10000
Cons ci ratio: 7.669991e-02	ci left: 1.990953e-01	ci right 2.150757e-01	k: 2070	n:10000
KS ci ratio: 8.600512e-02	ci left: 1.645515e-01	ci right 1.794401e-01	k: 1719	n:10000
FXR1   10000 perm   2 sec   (5283 perm/sec)   p_kst 1.719000e-01   p_cons 2.070000e-01   p_joint 2.411000e-01

Outputting figure to mutsig2_images.part000000000067/FXR1.5_1934_10000_0.1719_0.207_0.2411.png
                gene_name: FXR1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 38 percent done.
FPR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.808054e-02	ci left: 8.170019e-01	ci right 8.320086e-01	k: 8246	n:10000
KS ci ratio: 2.188948e-02	ci left: 7.538312e-01	ci right 7.706157e-01	k: 7623	n:10000
FPR3   10000 perm   2 sec   (5674 perm/sec)   p_kst 7.623000e-01   p_cons 8.246000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FPR3.4_1066_10000_0.7623_0.8246_1.png
                gene_name: FPR3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
FRK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.010768e-02	ci left: 7.836063e-01	ci right 7.996234e-01	k: 7917	n:10000
Cons ci ratio: 1.801178e-02	ci left: 8.181200e-01	ci right 8.330898e-01	k: 8257	n:10000
KS ci ratio: 4.716131e-02	ci left: 3.988435e-01	ci right 4.182098e-01	k: 4085	n:10000
FRK   10000 perm   2 sec   (5456 perm/sec)   p_kst 4.085000e-01   p_cons 8.257000e-01   p_joint 7.917000e-01

Outputting figure to mutsig2_images.part000000000067/FRK.4_1550_10000_0.4085_0.8257_0.7917.png
                gene_name: FRK
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 42 percent done.
FRMD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.802042e-02	ci left: 5.053515e-01	ci right 5.250397e-01	k: 5152	n:10000
Cons ci ratio: 3.248534e-02	ci left: 5.830946e-01	ci right 6.024514e-01	k: 5928	n:10000
KS ci ratio: 4.721990e-02	ci left: 3.982459e-01	ci right 4.176078e-01	k: 4079	n:10000
FRMD6   10000 perm   2 sec   (5730 perm/sec)   p_kst 4.079000e-01   p_cons 5.928000e-01   p_joint 5.152000e-01

Outputting figure to mutsig2_images.part000000000067/FRMD6.4_1897_10000_0.4079_0.5928_0.5152.png
                gene_name: FRMD6
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 44 percent done.
FRS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.265710e-02	ci left: 2.724030e-01	ci right 2.901245e-01	k: 2812	n:10000
Cons ci ratio: 1.014946e-01	ci left: 1.231736e-01	ci right 1.364429e-01	k: 1297	n:10000
KS ci ratio: 3.892855e-02	ci left: 4.935506e-01	ci right 5.132474e-01	k: 5034	n:10000
FRS2   10000 perm   2 sec   (5806 perm/sec)   p_kst 5.034000e-01   p_cons 1.297000e-01   p_joint 2.812000e-01

Joint ci ratio: 4.682326e-02	ci left: 2.533854e-01	ci right 2.655846e-01	k: 5189	n:20000
Cons ci ratio: 7.124930e-02	ci left: 1.267467e-01	ci right 1.361607e-01	k: 2628	n:20000
KS ci ratio: 2.771096e-02	ci left: 4.931459e-01	ci right 5.070541e-01	k: 10002	n:20000
FRS2   20000 perm   4 sec   (5166 perm/sec)   p_kst 5.001000e-01   p_cons 1.314000e-01   p_joint 2.594500e-01

Outputting figure to mutsig2_images.part000000000067/FRS2.4_1547_20000_0.5001_0.1314_0.25945.png
                gene_name: FRS2
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 45 percent done.
FSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.837970e-02	ci left: 8.121240e-01	ci right 8.272893e-01	k: 8198	n:10000
KS ci ratio: 1.052715e-02	ci left: 9.277156e-01	ci right 9.376305e-01	k: 9328	n:10000
FSD1   10000 perm   2 sec   (5805 perm/sec)   p_kst 9.328000e-01   p_cons 8.198000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FSD1.4_1543_10000_0.9328_0.8198_1.png
                gene_name: FSD1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
FSIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.182125e-02	ci left: 4.577814e-01	ci right 4.774375e-01	k: 4676	n:10000
KS ci ratio: 2.315067e-02	ci left: 7.326985e-01	ci right 7.499607e-01	k: 7414	n:10000
FSIP1   10000 perm   2 sec   (6388 perm/sec)   p_kst 7.414000e-01   p_cons 4.676000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FSIP1.4_1790_10000_0.7414_0.4676_1.png
                gene_name: FSIP1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
FTMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.542450e-02	ci left: 5.405866e-01	ci right 5.601840e-01	k: 5504	n:10000
KS ci ratio: 5.483237e-03	ci left: 9.780229e-01	ci right 9.834920e-01	k: 9809	n:10000
FTMT   10000 perm   1 sec   (6716 perm/sec)   p_kst 9.809000e-01   p_cons 5.504000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FTMT.4_733_10000_0.9809_0.5504_1.png
                gene_name: FTMT
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
FTSJ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.382843e-02	ci left: 5.633354e-01	ci right 5.828220e-01	k: 5731	n:10000
Cons ci ratio: 1.924495e-02	ci left: 7.979081e-01	ci right 8.135134e-01	k: 8058	n:10000
KS ci ratio: 5.004015e-02	ci left: 3.706717e-01	ci right 3.897981e-01	k: 3802	n:10000
FTSJ3   10000 perm   2 sec   (5516 perm/sec)   p_kst 3.802000e-01   p_cons 8.058000e-01   p_joint 5.731000e-01

Outputting figure to mutsig2_images.part000000000067/FTSJ3.4_2624_10000_0.3802_0.8058_0.5731.png
                gene_name: FTSJ3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 53 percent done.
FUT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.118333e-02	ci left: 9.194566e-01	ci right 9.298944e-01	k: 9248	n:10000
Cons ci ratio: 2.714277e-02	ci left: 6.666264e-01	ci right 6.850711e-01	k: 6759	n:10000
KS ci ratio: 2.179286e-02	ci left: 7.554502e-01	ci right 7.721959e-01	k: 7639	n:10000
FUT1   10000 perm   1 sec   (7006 perm/sec)   p_kst 7.639000e-01   p_cons 6.759000e-01   p_joint 9.248000e-01

Outputting figure to mutsig2_images.part000000000067/FUT1.4_1102_10000_0.7639_0.6759_0.9248.png
                gene_name: FUT1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 55 percent done.
FUT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.293560e-02	ci left: 1.749728e-01	ci right 1.902126e-01	k: 1825	n:10000
Cons ci ratio: 5.087845e-02	ci left: 3.629130e-01	ci right 3.819614e-01	k: 3724	n:10000
KS ci ratio: 1.115553e-01	ci left: 1.037366e-01	ci right 1.160916e-01	k: 1098	n:10000
FUT3   10000 perm   2 sec   (6537 perm/sec)   p_kst 1.098000e-01   p_cons 3.724000e-01   p_joint 1.825000e-01

Joint ci ratio: 5.679772e-02	ci left: 1.868581e-01	ci right 1.978315e-01	k: 3846	n:20000
Cons ci ratio: 3.604954e-02	ci left: 3.647973e-01	ci right 3.782401e-01	k: 7430	n:20000
KS ci ratio: 7.935020e-02	ci left: 1.044183e-01	ci right 1.130958e-01	k: 2174	n:20000
FUT3   20000 perm   3 sec   (5773 perm/sec)   p_kst 1.087000e-01   p_cons 3.715000e-01   p_joint 1.923000e-01

Outputting figure to mutsig2_images.part000000000067/FUT3.4_1090_20000_0.1087_0.3715_0.1923.png
                gene_name: FUT3
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 56 percent done.
FSD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.030513e-01	ci left: 1.198488e-01	ci right 1.329697e-01	k: 1263	n:10000
Cons ci ratio: 3.196988e-02	ci left: 5.908220e-01	ci right 6.101194e-01	k: 6005	n:10000
KS ci ratio: 1.915330e-01	ci left: 3.633915e-02	ci right 4.413159e-02	k: 401	n:10000
FSD2   10000 perm   2 sec   (5748 perm/sec)   p_kst 4.010000e-02   p_cons 6.005000e-01   p_joint 1.263000e-01

Joint ci ratio: 7.659211e-02	ci left: 1.113472e-01	ci right 1.202648e-01	k: 2315	n:20000
Cons ci ratio: 2.238655e-02	ci left: 5.983857e-01	ci right 6.119837e-01	k: 12104	n:20000
KS ci ratio: 1.372254e-01	ci left: 3.650420e-02	ci right 4.193082e-02	k: 783	n:20000
FSD2   20000 perm   4 sec   (5127 perm/sec)   p_kst 3.915000e-02   p_cons 6.052000e-01   p_joint 1.157500e-01

Joint ci ratio: 7.972960e-02	ci left: 7.158601e-02	ci right 7.756336e-02	k: 2236	n:30000
Cons ci ratio: 1.878921e-02	ci left: 5.863799e-01	ci right 5.975356e-01	k: 17759	n:30000
KS ci ratio: 1.143414e-01	ci left: 3.554046e-02	ci right 3.988299e-02	k: 1130	n:30000
FSD2   30000 perm   6 sec   (4919 perm/sec)   p_kst 3.766667e-02   p_cons 5.919667e-01   p_joint 7.453333e-02

Joint ci ratio: 5.990383e-02	ci left: 9.379586e-02	ci right 9.961284e-02	k: 3867	n:40000
Cons ci ratio: 1.627517e-02	ci left: 5.870395e-01	ci right 5.966972e-01	k: 23675	n:40000
KS ci ratio: 9.821357e-02	ci left: 3.641590e-02	ci right 4.020151e-02	k: 1531	n:40000
FSD2   40000 perm   8 sec   (4781 perm/sec)   p_kst 3.827500e-02   p_cons 5.918750e-01   p_joint 9.667500e-02

Outputting figure to mutsig2_images.part000000000067/FSD2.3_2298_40000_0.038275_0.59188_0.096675.png
                gene_name: FSD2
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.100 

Current progress: 58 percent done.
FST
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.574656e-02	ci left: 6.894995e-01	ci right 7.075847e-01	k: 6986	n:10000
Cons ci ratio: 4.719059e-02	ci left: 3.985447e-01	ci right 4.179088e-01	k: 4082	n:10000
KS ci ratio: 4.010601e-02	ci left: 4.786573e-01	ci right 4.983494e-01	k: 4885	n:10000
FST   10000 perm   2 sec   (5250 perm/sec)   p_kst 4.885000e-01   p_cons 4.082000e-01   p_joint 6.986000e-01

Outputting figure to mutsig2_images.part000000000067/FST.3_1065_10000_0.4885_0.4082_0.6986.png
                gene_name: FST
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 60 percent done.
FSTL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.003453e-02	ci left: 7.848229e-01	ci right 8.008061e-01	k: 7929	n:10000
Cons ci ratio: 3.448266e-02	ci left: 5.539127e-01	ci right 5.734502e-01	k: 5637	n:10000
KS ci ratio: 1.508193e-02	ci left: 8.643742e-01	ci right 8.776089e-01	k: 8711	n:10000
FSTL4   10000 perm   2 sec   (4545 perm/sec)   p_kst 8.711000e-01   p_cons 5.637000e-01   p_joint 7.929000e-01

Outputting figure to mutsig2_images.part000000000067/FSTL4.3_2589_10000_0.8711_0.5637_0.7929.png
                gene_name: FSTL4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 62 percent done.
FTSJD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.573434e-02	ci left: 6.897011e-01	ci right 7.077830e-01	k: 6988	n:10000
Cons ci ratio: 1.629469e-02	ci left: 8.456012e-01	ci right 8.595928e-01	k: 8527	n:10000
KS ci ratio: 4.649454e-02	ci left: 4.057173e-01	ci right 4.251320e-01	k: 4154	n:10000
FTSJD1   10000 perm   2 sec   (5621 perm/sec)   p_kst 4.154000e-01   p_cons 8.527000e-01   p_joint 6.988000e-01

Outputting figure to mutsig2_images.part000000000067/FTSJD1.3_2317_10000_0.4154_0.8527_0.6988.png
                gene_name: FTSJD1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 64 percent done.
FUCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.727471e-02	ci left: 3.097694e-01	ci right 3.281362e-01	k: 3189	n:10000
Cons ci ratio: 3.709500e-02	ci left: 5.176582e-01	ci right 5.373258e-01	k: 5275	n:10000
KS ci ratio: 7.743137e-02	ci left: 1.960405e-01	ci right 2.119323e-01	k: 2039	n:10000
FUCA1   10000 perm   2 sec   (5844 perm/sec)   p_kst 2.039000e-01   p_cons 5.275000e-01   p_joint 3.189000e-01

Outputting figure to mutsig2_images.part000000000067/FUCA1.3_1433_10000_0.2039_0.5275_0.3189.png
                gene_name: FUCA1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 65 percent done.
FURIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.236713e-03	ci left: 9.721719e-01	ci right 9.783470e-01	k: 9754	n:10000
Cons ci ratio: 3.406768e-03	ci left: 9.907188e-01	ci right 9.941851e-01	k: 9926	n:10000
KS ci ratio: 1.994913e-02	ci left: 7.862424e-01	ci right 8.021858e-01	k: 7943	n:10000
FURIN   10000 perm   2 sec   (5694 perm/sec)   p_kst 7.943000e-01   p_cons 9.926000e-01   p_joint 9.754000e-01

Outputting figure to mutsig2_images.part000000000067/FURIN.3_2445_10000_0.7943_0.9926_0.9754.png
                gene_name: FURIN
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 67 percent done.
FOXRED2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
Cons ci ratio: 3.007806e-01	ci left: 1.418736e-02	ci right 1.929975e-02	k: 166	n:10000
KS ci ratio: 3.043253e-02	ci left: 6.143208e-01	ci right 6.334069e-01	k: 6239	n:10000
FOXRED2   10000 perm   2 sec   (5791 perm/sec)   p_kst 6.239000e-01   p_cons 1.660000e-02   p_joint 7.400000e-02

Joint ci ratio: 1.049967e-01	ci left: 6.171935e-02	ci right 6.860773e-02	k: 1302	n:20000
Cons ci ratio: 2.050195e-01	ci left: 1.610780e-02	ci right 1.983423e-02	k: 358	n:20000
KS ci ratio: 2.161189e-02	ci left: 6.151372e-01	ci right 6.286273e-01	k: 12438	n:20000
FOXRED2   20000 perm   4 sec   (5152 perm/sec)   p_kst 6.219000e-01   p_cons 1.790000e-02   p_joint 6.510000e-02

Joint ci ratio: 8.522967e-02	ci left: 6.305258e-02	ci right 6.869851e-02	k: 1975	n:30000
Cons ci ratio: 1.684372e-01	ci left: 1.623808e-02	ci right 1.925634e-02	k: 531	n:30000
KS ci ratio: 1.754517e-02	ci left: 6.190920e-01	ci right 6.300838e-01	k: 18738	n:30000
FOXRED2   30000 perm   6 sec   (4906 perm/sec)   p_kst 6.246000e-01   p_cons 1.770000e-02   p_joint 6.583333e-02

Joint ci ratio: 3.436503e-02	ci left: 2.412139e-01	ci right 2.496731e-01	k: 9817	n:40000
Cons ci ratio: 1.439550e-01	ci left: 1.688847e-02	ci right 1.953214e-02	k: 727	n:40000
KS ci ratio: 1.519306e-02	ci left: 6.198834e-01	ci right 6.293985e-01	k: 24986	n:40000
FOXRED2   40000 perm   8 sec   (4810 perm/sec)   p_kst 6.246500e-01   p_cons 1.817500e-02   p_joint 2.454250e-01

Joint ci ratio: 3.663980e-02	ci left: 1.828558e-01	ci right 1.897006e-01	k: 9313	n:50000
Cons ci ratio: 1.286137e-01	ci left: 1.706572e-02	ci right 1.943069e-02	k: 911	n:50000
KS ci ratio: 1.358075e-02	ci left: 6.206793e-01	ci right 6.291862e-01	k: 31247	n:50000
FOXRED2   50000 perm   11 sec   (4691 perm/sec)   p_kst 6.249400e-01   p_cons 1.822000e-02   p_joint 1.862600e-01

Joint ci ratio: 9.377345e-02	ci left: 2.697135e-02	ci right 2.964120e-02	k: 1697	n:60000
Cons ci ratio: 1.183140e-01	ci left: 1.690267e-02	ci right 1.904432e-02	k: 1077	n:60000
KS ci ratio: 1.242768e-02	ci left: 6.199096e-01	ci right 6.276785e-01	k: 37428	n:60000
FOXRED2   60000 perm   13 sec   (4565 perm/sec)   p_kst 6.238000e-01   p_cons 1.795000e-02   p_joint 2.828333e-02

Joint ci ratio: 9.206892e-02	ci left: 2.407943e-02	ci right 2.641729e-02	k: 1766	n:70000
Cons ci ratio: 1.093460e-01	ci left: 1.704188e-02	ci right 1.902693e-02	k: 1261	n:70000
KS ci ratio: 1.149112e-02	ci left: 6.208002e-01	ci right 6.279894e-01	k: 43708	n:70000
FOXRED2   70000 perm   16 sec   (4492 perm/sec)   p_kst 6.244000e-01   p_cons 1.801429e-02   p_joint 2.522857e-02

Joint ci ratio: 9.405782e-02	ci left: 2.024958e-02	ci right 2.226035e-02	k: 1699	n:80000
Cons ci ratio: 1.020423e-01	ci left: 1.718746e-02	ci right 1.904772e-02	k: 1448	n:80000
KS ci ratio: 1.074468e-02	ci left: 6.212213e-01	ci right 6.279447e-01	k: 49967	n:80000
FOXRED2   80000 perm   18 sec   (4416 perm/sec)   p_kst 6.245875e-01   p_cons 1.810000e-02   p_joint 2.123750e-02

Joint ci ratio: 9.201540e-02	ci left: 1.885635e-02	ci right 2.068590e-02	k: 1778	n:90000
Cons ci ratio: 9.633065e-02	ci left: 1.719565e-02	ci right 1.894672e-02	k: 1625	n:90000
KS ci ratio: 1.013137e-02	ci left: 6.213601e-01	ci right 6.276985e-01	k: 56208	n:90000
FOXRED2   90000 perm   21 sec   (4341 perm/sec)   p_kst 6.245333e-01   p_cons 1.805556e-02   p_joint 1.975556e-02

Outputting figure to mutsig2_images.part000000000067/FOXRED2.2_2087_90000_0.62453_0.018056_0.019756.png
                gene_name: FOXRED2
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 69 percent done.
FPR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.840271e-02	ci left: 5.003504e-01	ci right 5.200436e-01	k: 5102	n:10000
Cons ci ratio: 2.742813e-02	ci left: 6.619944e-01	ci right 6.805058e-01	k: 6713	n:10000
KS ci ratio: 7.291787e-02	ci left: 2.159584e-01	ci right 2.324025e-01	k: 2241	n:10000
FPR1   10000 perm   3 sec   (3702 perm/sec)   p_kst 2.241000e-01   p_cons 6.713000e-01   p_joint 5.102000e-01

Outputting figure to mutsig2_images.part000000000067/FPR1.2_1057_10000_0.2241_0.6713_0.5102.png
                gene_name: FPR1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 71 percent done.
FRA10AC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.302484e-02	ci left: 4.437074e-01	ci right 4.633197e-01	k: 4535	n:10000
Cons ci ratio: 2.627337e-02	ci left: 6.808309e-01	ci right 6.990583e-01	k: 6900	n:10000
KS ci ratio: 1.127108e-01	ci left: 1.017865e-01	ci right 1.140430e-01	k: 1078	n:10000
FRA10AC1   10000 perm   2 sec   (4596 perm/sec)   p_kst 1.078000e-01   p_cons 6.900000e-01   p_joint 4.535000e-01

Joint ci ratio: 1.700258e-02	ci left: 7.203653e-01	ci right 7.327687e-01	k: 14532	n:20000
Cons ci ratio: 1.896612e-02	ci left: 6.745900e-01	ci right 6.875573e-01	k: 13622	n:20000
KS ci ratio: 7.842279e-02	ci left: 1.066782e-01	ci right 1.154352e-01	k: 2220	n:20000
FRA10AC1   20000 perm   4 sec   (4966 perm/sec)   p_kst 1.110000e-01   p_cons 6.811000e-01   p_joint 7.266000e-01

Outputting figure to mutsig2_images.part000000000067/FRA10AC1.2_1000_20000_0.111_0.6811_0.7266.png
                gene_name: FRA10AC1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 73 percent done.
FRMD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.398338e-02	ci left: 4.328329e-01	ci right 4.524006e-01	k: 4426	n:10000
Cons ci ratio: 6.329851e-02	ci left: 2.683438e-01	ci right 2.859862e-01	k: 2771	n:10000
KS ci ratio: 5.467681e-02	ci left: 3.301173e-01	ci right 3.487763e-01	k: 3394	n:10000
FRMD1   10000 perm   2 sec   (4127 perm/sec)   p_kst 3.394000e-01   p_cons 2.771000e-01   p_joint 4.426000e-01

Outputting figure to mutsig2_images.part000000000067/FRMD1.2_1707_10000_0.3394_0.2771_0.4426.png
                gene_name: FRMD1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 75 percent done.
FRMD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.531941e-02	ci left: 6.965581e-01	ci right 7.145221e-01	k: 7056	n:10000
Cons ci ratio: 7.707555e-02	ci left: 1.975185e-01	ci right 2.134534e-01	k: 2054	n:10000
KS ci ratio: 3.529587e-02	ci left: 5.423897e-01	ci right 5.619799e-01	k: 5522	n:10000
FRMD3   10000 perm   3 sec   (3380 perm/sec)   p_kst 5.522000e-01   p_cons 2.054000e-01   p_joint 7.056000e-01

Outputting figure to mutsig2_images.part000000000067/FRMD3.2_1850_10000_0.5522_0.2054_0.7056.png
                gene_name: FRMD3
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 76 percent done.
FRMD4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.786094e-02	ci left: 5.074522e-01	ci right 5.271377e-01	k: 5173	n:10000
KS ci ratio: 5.044745e-03	ci left: 9.811299e-01	ci right 9.861827e-01	k: 9838	n:10000
FRMD4B   10000 perm   3 sec   (3136 perm/sec)   p_kst 9.838000e-01   p_cons 5.173000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FRMD4B.2_3197_10000_0.9838_0.5173_1.png
                gene_name: FRMD4B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
FRS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.371664e-01	ci left: 7.029921e-02	ci right 8.074967e-02	k: 754	n:10000
Cons ci ratio: 1.781130e-02	ci left: 8.213734e-01	ci right 8.362346e-01	k: 8289	n:10000
KS ci ratio: 1.500300e-01	ci left: 5.908749e-02	ci right 6.876845e-02	k: 638	n:10000
FRS3   10000 perm   2 sec   (6212 perm/sec)   p_kst 6.380000e-02   p_cons 8.289000e-01   p_joint 7.540000e-02

Joint ci ratio: 9.627114e-02	ci left: 7.285307e-02	ci right 8.027059e-02	k: 1530	n:20000
Cons ci ratio: 1.318251e-02	ci left: 8.101040e-01	ci right 8.209041e-01	k: 16311	n:20000
KS ci ratio: 1.070774e-01	ci left: 5.942775e-02	ci right 6.620004e-02	k: 1255	n:20000
FRS3   20000 perm   4 sec   (5608 perm/sec)   p_kst 6.275000e-02   p_cons 8.155500e-01   p_joint 7.650000e-02

Joint ci ratio: 1.629427e-02	ci left: 6.532024e-01	ci right 6.639668e-01	k: 19758	n:30000
Cons ci ratio: 1.076873e-02	ci left: 8.109626e-01	ci right 8.197762e-01	k: 24462	n:30000
KS ci ratio: 8.815518e-02	ci left: 5.910110e-02	ci right 6.458413e-02	k: 1854	n:30000
FRS3   30000 perm   6 sec   (5218 perm/sec)   p_kst 6.180000e-02   p_cons 8.154000e-01   p_joint 6.586000e-01

Outputting figure to mutsig2_images.part000000000067/FRS3.2_1499_30000_0.0618_0.8154_0.6586.png
                gene_name: FRS3
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 80 percent done.
FRZB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.523170e-02	ci left: 5.432913e-01	ci right 5.628777e-01	k: 5531	n:10000
Cons ci ratio: 4.373470e-02	ci left: 4.356259e-01	ci right 4.552059e-01	k: 4454	n:10000
KS ci ratio: 3.455280e-02	ci left: 5.529105e-01	ci right 5.724530e-01	k: 5627	n:10000
FRZB   10000 perm   2 sec   (6302 perm/sec)   p_kst 5.627000e-01   p_cons 4.454000e-01   p_joint 5.531000e-01

Outputting figure to mutsig2_images.part000000000067/FRZB.2_1002_10000_0.5627_0.4454_0.5531.png
                gene_name: FRZB
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 82 percent done.
FSCN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.949308e-02	ci left: 4.863528e-01	ci right 5.060494e-01	k: 4962	n:10000
Cons ci ratio: 1.849152e-02	ci left: 8.102954e-01	ci right 8.255190e-01	k: 8180	n:10000
KS ci ratio: 6.822271e-02	ci left: 2.396590e-01	ci right 2.566879e-01	k: 2481	n:10000
FSCN3   10000 perm   2 sec   (6326 perm/sec)   p_kst 2.481000e-01   p_cons 8.180000e-01   p_joint 4.962000e-01

Outputting figure to mutsig2_images.part000000000067/FSCN3.2_1521_10000_0.2481_0.818_0.4962.png
                gene_name: FSCN3
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 84 percent done.
FSHB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.056825e-02	ci left: 2.274091e-01	ci right 2.441451e-01	k: 2357	n:10000
Cons ci ratio: 2.696950e-02	ci left: 6.694464e-01	ci right 6.878494e-01	k: 6787	n:10000
KS ci ratio: 1.081046e-01	ci left: 1.098838e-01	ci right 1.225407e-01	k: 1161	n:10000
FSHB   10000 perm   1 sec   (6903 perm/sec)   p_kst 1.161000e-01   p_cons 6.787000e-01   p_joint 2.357000e-01

Joint ci ratio: 4.989977e-02	ci left: 2.298810e-01	ci right 2.416959e-01	k: 4715	n:20000
Cons ci ratio: 1.898140e-02	ci left: 6.742382e-01	ci right 6.872092e-01	k: 13615	n:20000
KS ci ratio: 7.644287e-02	ci left: 1.117405e-01	ci right 1.206714e-01	k: 2323	n:20000
FSHB   20000 perm   3 sec   (6052 perm/sec)   p_kst 1.161500e-01   p_cons 6.807500e-01   p_joint 2.357500e-01

Outputting figure to mutsig2_images.part000000000067/FSHB.2_398_20000_0.11615_0.68075_0.23575.png
                gene_name: FSHB
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 85 percent done.
FTCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.337438e-02	ci left: 5.699534e-01	ci right 5.894001e-01	k: 5797	n:10000
Cons ci ratio: 4.796083e-02	ci left: 3.907768e-01	ci right 4.100813e-01	k: 4004	n:10000
KS ci ratio: 3.384225e-02	ci left: 5.631348e-01	ci right 5.826227e-01	k: 5729	n:10000
FTCD   10000 perm   2 sec   (6249 perm/sec)   p_kst 5.729000e-01   p_cons 4.004000e-01   p_joint 5.797000e-01

Outputting figure to mutsig2_images.part000000000067/FTCD.2_1682_10000_0.5729_0.4004_0.5797.png
                gene_name: FTCD
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 87 percent done.
FTHL17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.671391e-02	ci left: 8.389786e-01	ci right 8.532191e-01	k: 8462	n:10000
Cons ci ratio: 3.687240e-02	ci left: 5.206607e-01	ci right 5.403215e-01	k: 5305	n:10000
KS ci ratio: 3.920980e-02	ci left: 4.899514e-01	ci right 5.096487e-01	k: 4998	n:10000
FTHL17   10000 perm   1 sec   (6853 perm/sec)   p_kst 4.998000e-01   p_cons 5.305000e-01   p_joint 8.462000e-01

Outputting figure to mutsig2_images.part000000000067/FTHL17.2_556_10000_0.4998_0.5305_0.8462.png
                gene_name: FTHL17
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 89 percent done.
FUBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.136698e-02	ci left: 9.170854e-01	ci right 9.276670e-01	k: 9225	n:10000
KS ci ratio: 4.063929e-02	ci left: 4.720631e-01	ci right 4.917475e-01	k: 4819	n:10000
FUBP1   10000 perm   2 sec   (5982 perm/sec)   p_kst 4.819000e-01   p_cons 9.225000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FUBP1.2_2015_10000_0.4819_0.9225_1.png
                gene_name: FUBP1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
FUNDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.928552e-01	ci left: 1.502126e-02	ci right 2.026513e-02	k: 175	n:10000
Cons ci ratio: 2.963012e-01	ci left: 1.465041e-02	ci right 1.983629e-02	k: 171	n:10000
KS ci ratio: 2.578324e-02	ci left: 6.888946e-01	ci right 7.069900e-01	k: 6980	n:10000
FUNDC1   10000 perm   1 sec   (7266 perm/sec)   p_kst 6.980000e-01   p_cons 1.710000e-02   p_joint 1.750000e-02

Joint ci ratio: 8.607760e-02	ci left: 8.989170e-02	ci right 9.802679e-02	k: 1878	n:20000
Cons ci ratio: 9.692394e-02	ci left: 7.192427e-02	ci right 7.929968e-02	k: 1511	n:20000
KS ci ratio: 1.832287e-02	ci left: 6.894714e-01	ci right 7.022717e-01	k: 13918	n:20000
FUNDC1   20000 perm   3 sec   (6370 perm/sec)   p_kst 6.959000e-01   p_cons 7.555000e-02   p_joint 9.390000e-02

Outputting figure to mutsig2_images.part000000000067/FUNDC1.2_488_20000_0.6959_0.07555_0.0939.png
                gene_name: FUNDC1
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.098 

Current progress: 93 percent done.
FUT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.511784e-02	ci left: 5.448942e-01	ci right 5.644739e-01	k: 5547	n:10000
Cons ci ratio: 8.195533e-03	ci left: 9.540918e-01	ci right 9.620385e-01	k: 9582	n:10000
KS ci ratio: 4.644672e-02	ci left: 4.062155e-01	ci right 4.256335e-01	k: 4159	n:10000
FUT10   10000 perm   2 sec   (6414 perm/sec)   p_kst 4.159000e-01   p_cons 9.582000e-01   p_joint 5.547000e-01

Outputting figure to mutsig2_images.part000000000067/FUT10.2_1456_10000_0.4159_0.9582_0.5547.png
                gene_name: FUT10
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 95 percent done.
FUT8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.249928e-02	ci left: 4.497952e-01	ci right 4.694284e-01	k: 4596	n:10000
KS ci ratio: 1.618433e-02	ci left: 8.473340e-01	ci right 8.612589e-01	k: 8544	n:10000
FUT8   10000 perm   2 sec   (6101 perm/sec)   p_kst 8.544000e-01   p_cons 4.596000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000067/FUT8.2_1863_10000_0.8544_0.4596_1.png
                gene_name: FUT8
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
FXYD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.123610e-01	ci left: 1.023714e-01	ci right 1.146577e-01	k: 1084	n:10000
Cons ci ratio: 1.083685e-01	ci left: 1.093957e-01	ci right 1.220291e-01	k: 1156	n:10000
KS ci ratio: 7.774266e-02	ci left: 1.947597e-01	ci right 2.106139e-01	k: 2026	n:10000
FXYD5   10000 perm   1 sec   (6930 perm/sec)   p_kst 2.026000e-01   p_cons 1.156000e-01   p_joint 1.084000e-01

Joint ci ratio: 5.471080e-02	ci left: 1.986315e-01	ci right 2.098546e-01	k: 4084	n:20000
Cons ci ratio: 7.430647e-02	ci left: 1.175927e-01	ci right 1.267175e-01	k: 2442	n:20000
KS ci ratio: 5.478665e-02	ci left: 1.981862e-01	ci right 2.094001e-01	k: 4075	n:20000
FXYD5   20000 perm   3 sec   (6064 perm/sec)   p_kst 2.037500e-01   p_cons 1.221000e-01   p_joint 2.042000e-01

Outputting figure to mutsig2_images.part000000000067/FXYD5.2_569_20000_0.20375_0.1221_0.2042.png
                gene_name: FXYD5
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 98 percent done.
FXYD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.451724e-02	ci left: 7.098755e-01	ci right 7.275970e-01	k: 7188	n:10000
Cons ci ratio: 8.490444e-02	ci left: 1.681880e-01	ci right 1.832014e-01	k: 1756	n:10000
KS ci ratio: 3.677630e-02	ci left: 5.219620e-01	ci right 5.416195e-01	k: 5318	n:10000
FXYD6   10000 perm   1 sec   (7273 perm/sec)   p_kst 5.318000e-01   p_cons 1.756000e-01   p_joint 7.188000e-01

Outputting figure to mutsig2_images.part000000000067/FXYD6.2_312_10000_0.5318_0.1756_0.7188.png
                gene_name: FXYD6
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000067
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 67 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1709>
Subject: Job 9893946: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1709>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000068> was used as the working directory.
Started at Sat Oct  6 00:09:18 2012
Results reported at Sat Oct  6 03:23:38 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000068.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000068.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 68  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000068.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11778.91 sec.
    Max Memory :      3598 MB
    Max Swap   :      6024 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
68
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 68
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 68: processing genes 6041 - 6130
Calculating significance of each gene.
Using projection method.
6041	FYB	3.924482e-01
6042	FYCO1	6.279760e-01
6043	FYN	2.304696e-01
6044	FYTTD1	2.622211e-01
6045	FZD1	9.843700e-01
6046	FZD10	3.830450e-01
6047	FZD2	9.465789e-01
6048	FZD3	7.077635e-03
6049	FZD4	8.102558e-01
6050	FZD5	1
6051	FZD6	2.873819e-01
6052	FZD7	6.373662e-01
6053	FZD8	9.243550e-01
6054	FZD9	1
6055	FZR1	1
6056	G0S2	1
6057	G2E3	2.806685e-01
6058	G3BP1	9.058134e-02
6059	G3BP2	6.077113e-01
6060	G6PC	8.265966e-02
6061	G6PC2	8.377058e-01
6062	G6PC3	1.394168e-01
6063	G6PD	6.989863e-01
6064	GAA	1
6065	GAB1	1.635787e-01
6066	GAB2	9.457521e-01
6067	GAB3	6.151858e-03
6068	GAB4	4.431443e-01
6069	GABARAP	1
6070	GABARAPL1	1
6071	GABARAPL2	1
6072	GABBR1	3.973537e-01
6073	GABBR2	8.827627e-01
6074	GABPA	4.272440e-01
6075	GABPB1	8.559180e-02
6076	GABPB2	4.016539e-01
6077	GABRA1	7.709768e-01
6078	GABRA2	1.644023e-02
6079	GABRA3	6.667292e-02
6080	GABRA4	5.477884e-02
In gene GABRA5 the following bins exceed PROBCAP:
    COAD-AA-A017	categ 6	N = 1235    n = 1	mu =   2.63e-07
6081	GABRA5	4.563781e-04
6082	GABRA6	5.783192e-02
6083	GABRB1	8.670124e-02
6084	GABRB2	9.811433e-03
6085	GABRB3	3.868208e-03
6086	GABRD	1
6087	GABRE	1.704348e-01
6088	GABRG1	1.471120e-04
6089	GABRG2	1.561103e-03
6090	GABRG3	4.465029e-02
6091	GABRP	2.571123e-01
6092	GABRQ	5.705425e-02
6093	GABRR1	8.200214e-01
6094	GABRR2	3.831798e-01
6095	GABRR3	3.517352e-01
6096	GAD1	9.044862e-02
6097	GAD2	2.198666e-01
6098	GADD45A	1
6099	GADD45B	1
6100	GADD45G	1
6101	GADD45GIP1	1
6102	GADL1	1
6103	GAGE1	1
6104	GAGE10	1.702095e-01
6105	GAK	8.202000e-01
6106	GAL	1
6107	GAL3ST1	7.127629e-01
6108	GAL3ST2	5.725047e-01
6109	GAL3ST3	1
6110	GAL3ST4	2.508440e-01
6111	GALC	9.319127e-01
6112	GALE	7.457382e-01
6113	GALK1	1
6114	GALK2	4.021853e-01
6115	GALM	6.786181e-01
6116	GALNS	3.480630e-01
6117	GALNT1	8.479387e-01
6118	GALNT10	4.390823e-01
6119	GALNT11	4.859213e-01
6120	GALNT12	8.542474e-01
6121	GALNT13	9.511454e-02
6122	GALNT14	5.083239e-04
6123	GALNT2	5.198790e-01
6124	GALNT3	7.083988e-01
6125	GALNT4	1
6126	GALNT5	8.376956e-02
6127	GALNT6	5.948449e-01
6128	GALNT7	8.373283e-01
6129	GALNT8	7.762761e-01
6130	GALNT9	3.554374e-01
Done

Running MutSig 2:
Scatter job 68: processing genes 6041 - 6130
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
FZD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.878995e-01	ci left: 1.557819e-02	ci right 2.090773e-02	k: 181	n:10000
Cons ci ratio: 2.895240e-01	ci left: 1.539246e-02	ci right 2.069361e-02	k: 179	n:10000
KS ci ratio: 1.123610e-01	ci left: 1.023714e-01	ci right 1.146577e-01	k: 1084	n:10000
FZD3   10000 perm   2 sec   (4803 perm/sec)   p_kst 1.084000e-01   p_cons 1.790000e-02   p_joint 1.810000e-02

Joint ci ratio: 1.711769e-01	ci left: 2.335948e-02	ci right 2.777992e-02	k: 510	n:20000
Cons ci ratio: 2.123661e-01	ci left: 1.496956e-02	ci right 1.857290e-02	k: 334	n:20000
KS ci ratio: 7.908526e-02	ci left: 1.050569e-01	ci right 1.137570e-01	k: 2187	n:20000
FZD3   20000 perm   7 sec   (3064 perm/sec)   p_kst 1.093500e-01   p_cons 1.670000e-02   p_joint 2.550000e-02

Joint ci ratio: 1.332622e-01	ci left: 2.616234e-02	ci right 2.992980e-02	k: 840	n:30000
Cons ci ratio: 1.596485e-01	ci left: 1.812542e-02	ci right 2.130189e-02	k: 590	n:30000
KS ci ratio: 6.518820e-02	ci left: 1.040492e-01	ci right 1.110936e-01	k: 3226	n:30000
FZD3   30000 perm   9 sec   (3318 perm/sec)   p_kst 1.075333e-01   p_cons 1.966667e-02   p_joint 2.800000e-02

Joint ci ratio: 1.051138e-01	ci left: 3.183116e-02	ci right 3.538697e-02	k: 1343	n:40000
Cons ci ratio: 1.397141e-01	ci left: 1.795011e-02	ci right 2.067031e-02	k: 771	n:40000
KS ci ratio: 5.640831e-02	ci left: 1.046781e-01	ci right 1.107790e-01	k: 4308	n:40000
FZD3   40000 perm   12 sec   (3425 perm/sec)   p_kst 1.077000e-01   p_cons 1.927500e-02   p_joint 3.357500e-02

Joint ci ratio: 9.880392e-02	ci left: 2.901005e-02	ci right 3.204478e-02	k: 1525	n:50000
Cons ci ratio: 1.242443e-01	ci left: 1.830595e-02	ci right 2.075028e-02	k: 975	n:50000
KS ci ratio: 5.051762e-02	ci left: 1.047583e-01	ci right 1.102074e-01	k: 5373	n:50000
FZD3   50000 perm   14 sec   (3472 perm/sec)   p_kst 1.074600e-01   p_cons 1.950000e-02   p_joint 3.050000e-02

Joint ci ratio: 9.192354e-02	ci left: 2.806281e-02	ci right 3.078296e-02	k: 1764	n:60000
Cons ci ratio: 1.129870e-01	ci left: 1.855438e-02	ci right 2.079242e-02	k: 1179	n:60000
KS ci ratio: 4.635731e-02	ci left: 1.040095e-01	ci right 1.089620e-01	k: 6388	n:60000
FZD3   60000 perm   17 sec   (3491 perm/sec)   p_kst 1.064667e-01   p_cons 1.965000e-02   p_joint 2.940000e-02

Joint ci ratio: 8.896655e-02	ci left: 2.578383e-02	ci right 2.819845e-02	k: 1888	n:70000
Cons ci ratio: 1.045541e-01	ci left: 1.865550e-02	ci right 2.072744e-02	k: 1377	n:70000
KS ci ratio: 4.299553e-02	ci left: 1.038561e-01	ci right 1.084337e-01	k: 7429	n:70000
FZD3   70000 perm   20 sec   (3490 perm/sec)   p_kst 1.061286e-01   p_cons 1.967143e-02   p_joint 2.697143e-02

Joint ci ratio: 8.713339e-02	ci left: 2.359878e-02	ci right 2.576087e-02	k: 1973	n:80000
Cons ci ratio: 9.789213e-02	ci left: 1.868722e-02	ci right 2.062284e-02	k: 1571	n:80000
KS ci ratio: 4.027820e-02	ci left: 1.037262e-01	ci right 1.080024e-01	k: 8468	n:80000
FZD3   80000 perm   23 sec   (3483 perm/sec)   p_kst 1.058500e-01   p_cons 1.963750e-02   p_joint 2.466250e-02

Outputting figure to mutsig2_images.part000000000068/FZD3.13_2025_80000_0.10585_0.019637_0.024663.png
                gene_name: FZD3
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 2 percent done.
GABRG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.578402e-02	ci left: 4.131910e-01	ci right 4.326539e-01	k: 4229	n:10000
Cons ci ratio: 4.746511e-02	ci left: 3.957559e-01	ci right 4.150992e-01	k: 4054	n:10000
KS ci ratio: 5.425286e-02	ci left: 3.335933e-01	ci right 3.522982e-01	k: 3429	n:10000
GABRG2   10000 perm   2 sec   (5687 perm/sec)   p_kst 3.429000e-01   p_cons 4.054000e-01   p_joint 4.229000e-01

Outputting figure to mutsig2_images.part000000000068/GABRG2.11_1592_10000_0.3429_0.4054_0.4229.png
                gene_name: GABRG2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 3 percent done.
GALNT14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.237119e-02	ci left: 4.512924e-01	ci right 4.709303e-01	k: 4611	n:10000
Cons ci ratio: 6.962205e-02	ci left: 2.322487e-01	ci right 2.491027e-01	k: 2406	n:10000
KS ci ratio: 4.764275e-02	ci left: 3.939633e-01	ci right 4.132929e-01	k: 4036	n:10000
GALNT14   10000 perm   2 sec   (5510 perm/sec)   p_kst 4.036000e-01   p_cons 2.406000e-01   p_joint 4.611000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT14.10_1719_10000_0.4036_0.2406_0.4611.png
                gene_name: GALNT14
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 5 percent done.
GALNT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.383558e-02	ci left: 1.718257e-01	ci right 1.869615e-01	k: 1793	n:10000
Cons ci ratio: 2.857947e-02	ci left: 6.434762e-01	ci right 6.622347e-01	k: 6529	n:10000
KS ci ratio: 1.481806e-01	ci left: 6.053496e-02	ci right 7.032006e-02	k: 653	n:10000
GALNT5   10000 perm   2 sec   (4905 perm/sec)   p_kst 6.530000e-02   p_cons 6.529000e-01   p_joint 1.793000e-01

Joint ci ratio: 7.216866e-02	ci left: 1.238914e-01	ci right 1.332169e-01	k: 2570	n:20000
Cons ci ratio: 2.073842e-02	ci left: 6.344070e-01	ci right 6.477520e-01	k: 12822	n:20000
KS ci ratio: 1.060009e-01	ci left: 6.059777e-02	ci right 6.742966e-02	k: 1279	n:20000
GALNT5   20000 perm   4 sec   (4455 perm/sec)   p_kst 6.395000e-02   p_cons 6.411000e-01   p_joint 1.285000e-01

Joint ci ratio: 7.008374e-02	ci left: 9.111414e-02	ci right 9.776464e-02	k: 2832	n:30000
Cons ci ratio: 1.663010e-02	ci left: 6.439362e-01	ci right 6.547682e-01	k: 19481	n:30000
KS ci ratio: 8.581225e-02	ci left: 6.223591e-02	ci right 6.784869e-02	k: 1950	n:30000
GALNT5   30000 perm   7 sec   (4277 perm/sec)   p_kst 6.500000e-02   p_cons 6.493667e-01   p_joint 9.440000e-02

Outputting figure to mutsig2_images.part000000000068/GALNT5.10_2863_30000_0.065_0.64937_0.0944.png
                gene_name: GALNT5
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.098 

Current progress: 6 percent done.
GABRA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.355138e-02	ci left: 8.870840e-01	ci right 8.992859e-01	k: 8933	n:10000
KS ci ratio: 1.096501e-02	ci left: 9.222420e-01	ci right 9.325074e-01	k: 9275	n:10000
GABRA2   10000 perm   2 sec   (5721 perm/sec)   p_kst 9.275000e-01   p_cons 8.933000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GABRA2.9_1392_10000_0.9275_0.8933_1.png
                gene_name: GABRA2
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
GABRA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.687168e-02	ci left: 1.338424e-01	ci right 1.475676e-01	k: 1406	n:10000
Cons ci ratio: 2.383922e-02	ci left: 7.211824e-01	ci right 7.386835e-01	k: 7300	n:10000
KS ci ratio: 1.282789e-01	ci left: 7.989663e-02	ci right 9.094628e-02	k: 853	n:10000
GABRA5   10000 perm   2 sec   (5813 perm/sec)   p_kst 8.530000e-02   p_cons 7.300000e-01   p_joint 1.406000e-01

Joint ci ratio: 5.945325e-02	ci left: 1.732149e-01	ci right 1.838787e-01	k: 3570	n:20000
Cons ci ratio: 1.728951e-02	ci left: 7.136200e-01	ci right 7.261160e-01	k: 14398	n:20000
KS ci ratio: 9.073774e-02	ci left: 8.146427e-02	ci right 8.925677e-02	k: 1706	n:20000
GABRA5   20000 perm   4 sec   (5126 perm/sec)   p_kst 8.530000e-02   p_cons 7.199000e-01   p_joint 1.785000e-01

Outputting figure to mutsig2_images.part000000000068/GABRA5.9_1425_20000_0.0853_0.7199_0.1785.png
                gene_name: GABRA5
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 10 percent done.
GABRB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.010478e-01	ci left: 1.241518e-01	ci right 1.374641e-01	k: 1307	n:10000
Cons ci ratio: 1.655280e-01	ci left: 4.868974e-02	ci right 5.757286e-02	k: 530	n:10000
KS ci ratio: 5.122849e-02	ci left: 3.597307e-01	ci right 3.787456e-01	k: 3692	n:10000
GABRB3   10000 perm   2 sec   (5606 perm/sec)   p_kst 3.692000e-01   p_cons 5.300000e-02   p_joint 1.307000e-01

Joint ci ratio: 5.538456e-02	ci left: 1.947227e-01	ci right 2.058646e-01	k: 4005	n:20000
Cons ci ratio: 1.190752e-01	ci left: 4.833156e-02	ci right 5.449968e-02	k: 1027	n:20000
KS ci ratio: 3.603026e-02	ci left: 3.650464e-01	ci right 3.784909e-01	k: 7435	n:20000
GABRB3   20000 perm   4 sec   (5062 perm/sec)   p_kst 3.717500e-01   p_cons 5.135000e-02   p_joint 2.002500e-01

Joint ci ratio: 5.560099e-02	ci left: 1.381672e-01	ci right 1.461023e-01	k: 4263	n:30000
Cons ci ratio: 9.719201e-02	ci left: 4.892819e-02	ci right 5.395913e-02	k: 1542	n:30000
KS ci ratio: 2.918899e-02	ci left: 3.699494e-01	ci right 3.809414e-01	k: 11263	n:30000
GABRB3   30000 perm   6 sec   (4874 perm/sec)   p_kst 3.754333e-01   p_cons 5.140000e-02   p_joint 1.421000e-01

Outputting figure to mutsig2_images.part000000000068/GABRB3.9_1542_30000_0.37543_0.0514_0.1421.png
                gene_name: GABRB3
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 11 percent done.
GABRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.885105e-02	ci left: 6.391508e-01	ci right 6.579626e-01	k: 6486	n:10000
Cons ci ratio: 2.954424e-02	ci left: 6.281901e-01	ci right 6.471296e-01	k: 6377	n:10000
KS ci ratio: 4.739627e-02	ci left: 3.964531e-01	ci right 4.158017e-01	k: 4061	n:10000
GABRG1   10000 perm   2 sec   (5261 perm/sec)   p_kst 4.061000e-01   p_cons 6.377000e-01   p_joint 6.486000e-01

Outputting figure to mutsig2_images.part000000000068/GABRG1.9_1434_10000_0.4061_0.6377_0.6486.png
                gene_name: GABRG1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 13 percent done.
GAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.327051e-02	ci left: 1.737925e-01	ci right 1.889935e-01	k: 1813	n:10000
Cons ci ratio: 3.221025e-02	ci left: 5.872089e-01	ci right 6.065346e-01	k: 5969	n:10000
KS ci ratio: 1.141388e-01	ci left: 9.944712e-02	ci right 1.115838e-01	k: 1054	n:10000
GAD1   10000 perm   2 sec   (5840 perm/sec)   p_kst 1.054000e-01   p_cons 5.969000e-01   p_joint 1.813000e-01

Joint ci ratio: 5.947352e-02	ci left: 1.731161e-01	ci right 1.837775e-01	k: 3568	n:20000
Cons ci ratio: 2.296951e-02	ci left: 5.860029e-01	ci right 5.996701e-01	k: 11857	n:20000
KS ci ratio: 8.085991e-02	ci left: 1.008823e-01	ci right 1.094329e-01	k: 2102	n:20000
GAD1   20000 perm   4 sec   (5225 perm/sec)   p_kst 1.051000e-01   p_cons 5.928500e-01   p_joint 1.784000e-01

Outputting figure to mutsig2_images.part000000000068/GAD1.9_1890_20000_0.1051_0.59285_0.1784.png
                gene_name: GAD1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 14 percent done.
GABRA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.500293e-02	ci left: 7.018032e-01	ci right 7.196739e-01	k: 7108	n:10000
Cons ci ratio: 2.060644e-02	ci left: 7.752957e-01	ci right 7.915388e-01	k: 7835	n:10000
KS ci ratio: 4.306825e-02	ci left: 4.432085e-01	ci right 4.628189e-01	k: 4530	n:10000
GABRA4   10000 perm   2 sec   (5231 perm/sec)   p_kst 4.530000e-01   p_cons 7.835000e-01   p_joint 7.108000e-01

Outputting figure to mutsig2_images.part000000000068/GABRA4.8_1701_10000_0.453_0.7835_0.7108.png
                gene_name: GABRA4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 16 percent done.
GABRQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.233604e-02	ci left: 1.456039e-01	ci right 1.597991e-01	k: 1526	n:10000
Cons ci ratio: 1.042826e-01	ci left: 1.173073e-01	ci right 1.303127e-01	k: 1237	n:10000
KS ci ratio: 8.594478e-02	ci left: 1.647481e-01	ci right 1.796434e-01	k: 1721	n:10000
GABRQ   10000 perm   2 sec   (5379 perm/sec)   p_kst 1.721000e-01   p_cons 1.237000e-01   p_joint 1.526000e-01

Joint ci ratio: 5.571519e-02	ci left: 1.928428e-01	ci right 2.039451e-01	k: 3967	n:20000
Cons ci ratio: 7.527493e-02	ci left: 1.148875e-01	ci right 1.239235e-01	k: 2387	n:20000
KS ci ratio: 5.981036e-02	ci left: 1.714856e-01	ci right 1.821085e-01	k: 3535	n:20000
GABRQ   20000 perm   4 sec   (4867 perm/sec)   p_kst 1.767500e-01   p_cons 1.193500e-01   p_joint 1.983500e-01

Outputting figure to mutsig2_images.part000000000068/GABRQ.8_1935_20000_0.17675_0.11935_0.19835.png
                gene_name: GABRQ
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 17 percent done.
FYCO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.012179e-02	ci left: 2.892436e-01	ci right 3.072740e-01	k: 2982	n:10000
Cons ci ratio: 1.268230e-01	ci left: 8.164409e-02	ci right 9.279774e-02	k: 871	n:10000
KS ci ratio: 1.270466e-02	ci left: 8.990845e-01	ci right 9.106784e-01	k: 9050	n:10000
FYCO1   10000 perm   2 sec   (5076 perm/sec)   p_kst 9.050000e-01   p_cons 8.710000e-02   p_joint 2.982000e-01

Joint ci ratio: 3.589183e-02	ci left: 3.668395e-01	ci right 3.802973e-01	k: 7471	n:20000
Cons ci ratio: 8.679317e-02	ci left: 8.851906e-02	ci right 9.659985e-02	k: 1850	n:20000
KS ci ratio: 8.916695e-03	ci left: 9.021261e-01	ci right 9.102554e-01	k: 18125	n:20000
FYCO1   20000 perm   4 sec   (4585 perm/sec)   p_kst 9.062500e-01   p_cons 9.250000e-02   p_joint 3.735500e-01

Outputting figure to mutsig2_images.part000000000068/FYCO1.7_4505_20000_0.90625_0.0925_0.37355.png
                gene_name: FYCO1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 19 percent done.
GAB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.761920e-02	ci left: 3.071901e-01	ci right 3.255170e-01	k: 3163	n:10000
Cons ci ratio: 7.566438e-02	ci left: 2.035310e-01	ci right 2.196374e-01	k: 2115	n:10000
KS ci ratio: 5.043521e-02	ci left: 3.669909e-01	ci right 3.860810e-01	k: 3765	n:10000
GAB3   10000 perm   2 sec   (5089 perm/sec)   p_kst 3.765000e-01   p_cons 2.115000e-01   p_joint 3.163000e-01

Outputting figure to mutsig2_images.part000000000068/GAB3.7_1804_10000_0.3765_0.2115_0.3163.png
                gene_name: GAB3
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 21 percent done.
GABBR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 4.396556e-02	ci left: 4.330324e-01	ci right 4.526010e-01	k: 4428	n:10000
GABBR2   10000 perm   2 sec   (5321 perm/sec)   p_kst 4.428000e-01   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 4.122633e-01	ci left: 3.575194e-03	ci right 5.473296e-03	k: 89	n:20000
Cons ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
KS ci ratio: 3.080288e-02	ci left: 4.404920e-01	ci right 4.543233e-01	k: 8948	n:20000
GABBR2   20000 perm   4 sec   (4803 perm/sec)   p_kst 4.474000e-01   p_cons 1.000000e-04   p_joint 4.450000e-03

Joint ci ratio: 3.874710e-01	ci left: 2.743017e-03	ci right 4.089323e-03	k: 101	n:30000
Cons ci ratio: 2.263062e+00	ci left: 8.073745e-06	ci right 2.408020e-04	k: 2	n:30000
KS ci ratio: 2.544484e-02	ci left: 4.360366e-01	ci right 4.473080e-01	k: 13250	n:30000
GABBR2   30000 perm   7 sec   (4582 perm/sec)   p_kst 4.416667e-01   p_cons 6.666667e-05   p_joint 3.366667e-03

Joint ci ratio: 3.650115e-01	ci left: 2.351456e-03	ci right 3.422738e-03	k: 114	n:40000
Cons ci ratio: 2.263100e+00	ci left: 6.055289e-06	ci right 1.806054e-04	k: 2	n:40000
KS ci ratio: 2.196560e-02	ci left: 4.383735e-01	ci right 4.481347e-01	k: 17730	n:40000
GABBR2   40000 perm   9 sec   (4437 perm/sec)   p_kst 4.432500e-01   p_cons 5.000000e-05   p_joint 2.850000e-03

Joint ci ratio: 4.039329e-01	ci left: 1.501514e-03	ci right 2.278149e-03	k: 93	n:50000
Cons ci ratio: 1.959902e+00	ci left: 1.237361e-05	ci right 1.753353e-04	k: 3	n:50000
KS ci ratio: 1.964481e-02	ci left: 4.389391e-01	ci right 4.476675e-01	k: 22165	n:50000
GABBR2   50000 perm   12 sec   (4328 perm/sec)   p_kst 4.433000e-01   p_cons 6.000000e-05   p_joint 1.860000e-03

Joint ci ratio: 3.804044e-01	ci left: 1.431543e-03	ci right 2.118091e-03	k: 105	n:60000
Cons ci ratio: 1.959918e+00	ci left: 1.031132e-05	ci right 1.461142e-04	k: 3	n:60000
KS ci ratio: 1.794176e-02	ci left: 4.390864e-01	ci right 4.470524e-01	k: 26584	n:60000
GABBR2   60000 perm   14 sec   (4235 perm/sec)   p_kst 4.430667e-01   p_cons 5.000000e-05   p_joint 1.750000e-03

Joint ci ratio: 4.129356e-01	ci left: 1.021182e-03	ci right 1.564373e-03	k: 89	n:70000
Cons ci ratio: 1.959930e+00	ci left: 8.838260e-06	ci right 1.252416e-04	k: 3	n:70000
KS ci ratio: 1.659441e-02	ci left: 4.398721e-01	ci right 4.472469e-01	k: 31049	n:70000
GABBR2   70000 perm   17 sec   (4149 perm/sec)   p_kst 4.435571e-01   p_cons 4.285714e-05   p_joint 1.271429e-03

Joint ci ratio: 3.917525e-01	ci left: 1.005889e-03	ci right 1.506409e-03	k: 99	n:80000
Cons ci ratio: 1.959939e+00	ci left: 7.733468e-06	ci right 1.095870e-04	k: 3	n:80000
KS ci ratio: 1.554141e-02	ci left: 4.395162e-01	ci right 4.464129e-01	k: 35437	n:80000
GABBR2   80000 perm   20 sec   (4072 perm/sec)   p_kst 4.429625e-01   p_cons 3.750000e-05   p_joint 1.237500e-03

Joint ci ratio: 3.841633e-01	ci left: 9.342257e-04	ci right 1.387803e-03	k: 103	n:90000
Cons ci ratio: 1.959946e+00	ci left: 6.874187e-06	ci right 9.741102e-05	k: 3	n:90000
KS ci ratio: 1.466107e-02	ci left: 4.394290e-01	ci right 4.459302e-01	k: 39841	n:90000
GABBR2   90000 perm   22 sec   (4000 perm/sec)   p_kst 4.426778e-01   p_cons 3.333333e-05   p_joint 1.144444e-03

Joint ci ratio: 3.937778e-01	ci left: 7.956808e-04	ci right 1.194178e-03	k: 98	n:100000
Cons ci ratio: 1.959951e+00	ci left: 6.186764e-06	ci right 8.767020e-05	k: 3	n:100000
KS ci ratio: 1.388531e-02	ci left: 4.404275e-01	ci right 4.465957e-01	k: 44351	n:100000
GABBR2   100000 perm   25 sec   (3939 perm/sec)   p_kst 4.435100e-01   p_cons 3.000000e-05   p_joint 9.800000e-04

Joint ci ratio: 4.436932e-01	ci left: 5.524673e-04	ci right 8.748034e-04	k: 77	n:110000
Cons ci ratio: 1.959955e+00	ci left: 5.624327e-06	ci right 7.970039e-05	k: 3	n:110000
KS ci ratio: 1.323429e-02	ci left: 4.407519e-01	ci right 4.466329e-01	k: 48806	n:110000
GABBR2   110000 perm   28 sec   (3874 perm/sec)   p_kst 4.436909e-01   p_cons 2.727273e-05   p_joint 7.000000e-04

Joint ci ratio: 4.437065e-01	ci left: 5.064254e-04	ci right 8.019090e-04	k: 77	n:120000
Cons ci ratio: 1.959959e+00	ci left: 5.155631e-06	ci right 7.305885e-05	k: 3	n:120000
KS ci ratio: 1.266210e-02	ci left: 4.412194e-01	ci right 4.468500e-01	k: 53284	n:120000
GABBR2   120000 perm   31 sec   (3814 perm/sec)   p_kst 4.440333e-01   p_cons 2.500000e-05   p_joint 6.416667e-04

Joint ci ratio: 5.333316e-01	ci left: 3.054040e-04	ci right 5.332381e-04	k: 53	n:130000
Cons ci ratio: 1.959962e+00	ci left: 4.759042e-06	ci right 6.743907e-05	k: 3	n:130000
KS ci ratio: 1.216050e-02	ci left: 4.415272e-01	ci right 4.469369e-01	k: 57750	n:130000
GABBR2   130000 perm   35 sec   (3755 perm/sec)   p_kst 4.442308e-01   p_cons 2.307692e-05   p_joint 4.076923e-04

Joint ci ratio: 5.146127e-01	ci left: 3.083802e-04	ci right 5.274690e-04	k: 57	n:140000
Cons ci ratio: 1.753040e+00	ci left: 7.784806e-06	ci right 7.315257e-05	k: 4	n:140000
KS ci ratio: 1.173349e-02	ci left: 4.409809e-01	ci right 4.461928e-01	k: 62102	n:140000
GABBR2   140000 perm   38 sec   (3697 perm/sec)   p_kst 4.435857e-01   p_cons 2.857143e-05   p_joint 4.071429e-04

Joint ci ratio: 4.977359e-01	ci left: 3.110816e-04	ci right 5.223501e-04	k: 61	n:150000
Cons ci ratio: 1.753042e+00	ci left: 7.265815e-06	ci right 6.827584e-05	k: 4	n:150000
KS ci ratio: 1.140198e-02	ci left: 4.381921e-01	ci right 4.432236e-01	k: 66106	n:150000
GABBR2   150000 perm   41 sec   (3643 perm/sec)   p_kst 4.407067e-01   p_cons 2.666667e-05   p_joint 4.066667e-04

Joint ci ratio: 4.824176e-01	ci left: 3.135487e-04	ci right 5.177701e-04	k: 65	n:160000
Cons ci ratio: 1.753044e+00	ci left: 6.811699e-06	ci right 6.400868e-05	k: 4	n:160000
KS ci ratio: 1.104288e-02	ci left: 4.381404e-01	ci right 4.430118e-01	k: 70492	n:160000
GABBR2   160000 perm   45 sec   (3593 perm/sec)   p_kst 4.405750e-01   p_cons 2.500000e-05   p_joint 4.062500e-04

Joint ci ratio: 4.651199e-01	ci left: 3.210044e-04	ci right 5.202117e-04	k: 70	n:170000
Cons ci ratio: 1.481586e+00	ci left: 1.295243e-05	ci right 7.681884e-05	k: 6	n:170000
KS ci ratio: 1.071890e-02	ci left: 4.379500e-01	ci right 4.426755e-01	k: 74853	n:170000
GABBR2   170000 perm   48 sec   (3544 perm/sec)   p_kst 4.403118e-01   p_cons 3.529412e-05   p_joint 4.117647e-04

Joint ci ratio: 4.555958e-01	ci left: 3.179039e-04	ci right 5.098986e-04	k: 73	n:180000
Cons ci ratio: 1.481588e+00	ci left: 1.223284e-05	ci right 7.255121e-05	k: 6	n:180000
KS ci ratio: 1.042267e-02	ci left: 4.377439e-01	ci right 4.423358e-01	k: 79207	n:180000
GABBR2   180000 perm   52 sec   (3494 perm/sec)   p_kst 4.400389e-01   p_cons 3.333333e-05   p_joint 4.055556e-04

Joint ci ratio: 4.718256e-01	ci left: 2.779297e-04	ci right 4.536951e-04	k: 68	n:190000
Cons ci ratio: 1.239577e+00	ci left: 2.166008e-05	ci right 8.991811e-05	k: 9	n:190000
KS ci ratio: 1.014646e-02	ci left: 4.377190e-01	ci right 4.421881e-01	k: 83591	n:190000
GABBR2   190000 perm   55 sec   (3445 perm/sec)   p_kst 4.399526e-01   p_cons 4.736842e-05   p_joint 3.578947e-04

Joint ci ratio: 4.684464e-01	ci left: 2.684402e-04	ci right 4.365996e-04	k: 69	n:200000
Cons ci ratio: 8.356988e-01	ci left: 6.499779e-05	ci right 1.604992e-04	k: 21	n:200000
KS ci ratio: 9.895027e-03	ci left: 4.375031e-01	ci right 4.418587e-01	k: 87936	n:200000
GABBR2   200000 perm   59 sec   (3398 perm/sec)   p_kst 4.396800e-01   p_cons 1.050000e-04   p_joint 3.450000e-04

Joint ci ratio: 4.587205e-01	ci left: 2.682740e-04	ci right 4.317526e-04	k: 72	n:210000
Cons ci ratio: 8.357010e-01	ci left: 6.190261e-05	ci right 1.528566e-04	k: 21	n:210000
KS ci ratio: 9.656263e-03	ci left: 4.375708e-01	ci right 4.418213e-01	k: 92336	n:210000
GABBR2   210000 perm   63 sec   (3352 perm/sec)   p_kst 4.396952e-01   p_cons 1.000000e-04   p_joint 3.428571e-04

Joint ci ratio: 4.409543e-01	ci left: 2.802632e-04	ci right 4.424693e-04	k: 78	n:220000
Cons ci ratio: 8.357031e-01	ci left: 5.908881e-05	ci right 1.459087e-04	k: 21	n:220000
KS ci ratio: 9.431204e-03	ci left: 4.377789e-01	ci right 4.419318e-01	k: 96768	n:220000
GABBR2   220000 perm   66 sec   (3309 perm/sec)   p_kst 4.398545e-01   p_cons 9.545455e-05   p_joint 3.545455e-04

Joint ci ratio: 4.381921e-01	ci left: 2.719441e-04	ci right 4.280583e-04	k: 79	n:230000
Cons ci ratio: 8.357050e-01	ci left: 5.651969e-05	ci right 1.395650e-04	k: 21	n:230000
KS ci ratio: 9.232579e-03	ci left: 4.373616e-01	ci right 4.414226e-01	k: 101060	n:230000
GABBR2   230000 perm   70 sec   (3268 perm/sec)   p_kst 4.393913e-01   p_cons 9.130435e-05   p_joint 3.434783e-04

Joint ci ratio: 4.251075e-01	ci left: 2.791830e-04	ci right 4.333058e-04	k: 84	n:240000
Cons ci ratio: 8.173356e-01	ci left: 5.744788e-05	ci right 1.387812e-04	k: 22	n:240000
KS ci ratio: 9.034286e-03	ci left: 4.376171e-01	ci right 4.415927e-01	k: 105505	n:240000
GABBR2   240000 perm   74 sec   (3226 perm/sec)   p_kst 4.396042e-01   p_cons 9.166667e-05   p_joint 3.500000e-04

Joint ci ratio: 4.251106e-01	ci left: 2.680153e-04	ci right 4.159742e-04	k: 84	n:250000
Cons ci ratio: 8.173373e-01	ci left: 5.514993e-05	ci right 1.332300e-04	k: 22	n:250000
KS ci ratio: 8.855284e-03	ci left: 4.374612e-01	ci right 4.413562e-01	k: 109852	n:250000
GABBR2   250000 perm   78 sec   (3186 perm/sec)   p_kst 4.394080e-01   p_cons 8.800000e-05   p_joint 3.360000e-04

Joint ci ratio: 4.276371e-01	ci left: 2.542733e-04	ci right 3.957194e-04	k: 83	n:260000
Cons ci ratio: 8.173388e-01	ci left: 5.302875e-05	ci right 1.281059e-04	k: 22	n:260000
KS ci ratio: 8.683803e-03	ci left: 4.374718e-01	ci right 4.412911e-01	k: 114239	n:260000
GABBR2   260000 perm   83 sec   (3146 perm/sec)   p_kst 4.393808e-01   p_cons 8.461538e-05   p_joint 3.192308e-04

Joint ci ratio: 4.354894e-01	ci left: 2.349513e-04	ci right 3.687530e-04	k: 80	n:270000
Cons ci ratio: 8.173402e-01	ci left: 5.106469e-05	ci right 1.233614e-04	k: 22	n:270000
KS ci ratio: 8.520503e-03	ci left: 4.375638e-01	ci right 4.413116e-01	k: 118648	n:270000
GABBR2   270000 perm   87 sec   (3107 perm/sec)   p_kst 4.394370e-01   p_cons 8.148148e-05   p_joint 2.962963e-04

Joint ci ratio: 4.226388e-01	ci left: 2.424890e-04	ci right 3.753573e-04	k: 85	n:280000
Cons ci ratio: 8.001309e-01	ci left: 5.207222e-05	ci right 1.232521e-04	k: 23	n:280000
KS ci ratio: 8.367114e-03	ci left: 4.375891e-01	ci right 4.412693e-01	k: 123040	n:280000
GABBR2   280000 perm   91 sec   (3069 perm/sec)   p_kst 4.394286e-01   p_cons 8.214286e-05   p_joint 3.035714e-04

Joint ci ratio: 4.178093e-01	ci left: 2.402945e-04	ci right 3.700359e-04	k: 87	n:290000
Cons ci ratio: 7.839649e-01	ci left: 5.302571e-05	ci right 1.231358e-04	k: 24	n:290000
KS ci ratio: 8.217406e-03	ci left: 4.378717e-01	ci right 4.414881e-01	k: 127507	n:290000
GABBR2   290000 perm   96 sec   (3034 perm/sec)   p_kst 4.396793e-01   p_cons 8.275862e-05   p_joint 3.000000e-04

Joint ci ratio: 2.218105e-01	ci left: 9.246914e-04	ci right 1.158453e-03	k: 311	n:300000
Cons ci ratio: 7.687407e-01	ci left: 5.392964e-05	ci right 1.230140e-04	k: 25	n:300000
KS ci ratio: 8.079389e-03	ci left: 4.378961e-01	ci right 4.414517e-01	k: 131902	n:300000
GABBR2   300000 perm   100 sec   (2990 perm/sec)   p_kst 4.396733e-01   p_cons 8.333333e-05   p_joint 1.036667e-03

Joint ci ratio: 2.254604e-01	ci left: 8.644083e-04	ci right 1.087026e-03	k: 301	n:310000
Cons ci ratio: 7.278905e-01	ci left: 6.001951e-05	ci right 1.305387e-04	k: 28	n:310000
KS ci ratio: 7.943366e-03	ci left: 4.382129e-01	ci right 4.417108e-01	k: 136388	n:310000
GABBR2   310000 perm   105 sec   (2952 perm/sec)   p_kst 4.399613e-01   p_cons 9.032258e-05   p_joint 9.709677e-04

Joint ci ratio: 2.225328e-01	ci left: 8.609927e-04	ci right 1.079457e-03	k: 309	n:320000
Cons ci ratio: 7.278916e-01	ci left: 5.814388e-05	ci right 1.264594e-04	k: 28	n:320000
KS ci ratio: 7.819983e-03	ci left: 4.381323e-01	ci right 4.415750e-01	k: 140753	n:320000
GABBR2   320000 perm   109 sec   (2924 perm/sec)   p_kst 4.398531e-01   p_cons 8.750000e-05   p_joint 9.656250e-04

Joint ci ratio: 2.186863e-01	ci left: 8.663939e-04	ci right 1.081918e-03	k: 320	n:330000
Cons ci ratio: 7.278926e-01	ci left: 5.638192e-05	ci right 1.226274e-04	k: 28	n:330000
KS ci ratio: 7.701608e-03	ci left: 4.380934e-01	ci right 4.414834e-01	k: 145130	n:330000
GABBR2   330000 perm   114 sec   (2889 perm/sec)   p_kst 4.397879e-01   p_cons 8.484848e-05   p_joint 9.696970e-04

Joint ci ratio: 2.137475e-01	ci left: 8.826414e-04	ci right 1.096599e-03	k: 335	n:340000
Cons ci ratio: 7.278936e-01	ci left: 5.472361e-05	ci right 1.190207e-04	k: 28	n:340000
KS ci ratio: 7.591577e-03	ci left: 4.378543e-01	ci right 4.411938e-01	k: 149438	n:340000
GABBR2   340000 perm   119 sec   (2860 perm/sec)   p_kst 4.395235e-01   p_cons 8.235294e-05   p_joint 9.852941e-04

Joint ci ratio: 2.112480e-01	ci left: 8.790637e-04	ci right 1.089339e-03	k: 343	n:350000
Cons ci ratio: 7.040206e-01	ci left: 5.783179e-05	ci right 1.223602e-04	k: 30	n:350000
KS ci ratio: 7.486866e-03	ci left: 4.375806e-01	ci right 4.408718e-01	k: 153729	n:350000
GABBR2   350000 perm   124 sec   (2832 perm/sec)   p_kst 4.392257e-01   p_cons 8.571429e-05   p_joint 9.800000e-04

Joint ci ratio: 2.173440e-01	ci left: 8.046960e-04	ci right 1.003479e-03	k: 324	n:360000
Cons ci ratio: 6.823522e-01	ci left: 6.080070e-05	ci right 1.254823e-04	k: 32	n:360000
KS ci ratio: 7.381079e-03	ci left: 4.376751e-01	ci right 4.409203e-01	k: 158147	n:360000
GABBR2   360000 perm   128 sec   (2805 perm/sec)   p_kst 4.392972e-01   p_cons 8.888889e-05   p_joint 9.000000e-04

Joint ci ratio: 2.218324e-01	ci left: 7.497421e-04	ci right 9.392970e-04	k: 311	n:370000
Cons ci ratio: 6.823531e-01	ci left: 5.915742e-05	ci right 1.220909e-04	k: 32	n:370000
KS ci ratio: 7.278654e-03	ci left: 4.378323e-01	ci right 4.410335e-01	k: 162590	n:370000
GABBR2   370000 perm   133 sec   (2778 perm/sec)   p_kst 4.394324e-01   p_cons 8.648649e-05   p_joint 8.405405e-04

Joint ci ratio: 2.183602e-01	ci left: 7.548774e-04	ci right 9.423426e-04	k: 321	n:380000
Cons ci ratio: 6.823539e-01	ci left: 5.760063e-05	ci right 1.188781e-04	k: 32	n:380000
KS ci ratio: 7.182257e-03	ci left: 4.378527e-01	ci right 4.410114e-01	k: 166984	n:380000
GABBR2   380000 perm   138 sec   (2752 perm/sec)   p_kst 4.394316e-01   p_cons 8.421053e-05   p_joint 8.447368e-04

Joint ci ratio: 2.170177e-01	ci left: 7.452184e-04	ci right 9.289953e-04	k: 325	n:390000
Cons ci ratio: 6.722443e-01	ci left: 5.824603e-05	ci right 1.188294e-04	k: 33	n:390000
KS ci ratio: 7.089112e-03	ci left: 4.379056e-01	ci right 4.410235e-01	k: 171391	n:390000
GABBR2   390000 perm   143 sec   (2725 perm/sec)   p_kst 4.394641e-01   p_cons 8.461538e-05   p_joint 8.333333e-04

Joint ci ratio: 2.153733e-01	ci left: 7.384108e-04	ci right 9.189466e-04	k: 330	n:400000
Cons ci ratio: 6.444134e-01	ci left: 6.303566e-05	ci right 1.245958e-04	k: 36	n:400000
KS ci ratio: 7.001986e-03	ci left: 4.377812e-01	ci right 4.408597e-01	k: 175728	n:400000
GABBR2   400000 perm   148 sec   (2700 perm/sec)   p_kst 4.393200e-01   p_cons 9.000000e-05   p_joint 8.250000e-04

Joint ci ratio: 2.134480e-01	ci left: 7.342489e-04	ci right 9.119523e-04	k: 336	n:410000
Cons ci ratio: 6.358777e-01	ci left: 6.354081e-05	ci right 1.243872e-04	k: 37	n:410000
KS ci ratio: 6.918371e-03	ci left: 4.376362e-01	ci right 4.406768e-01	k: 180054	n:410000
GABBR2   410000 perm   153 sec   (2675 perm/sec)   p_kst 4.391561e-01   p_cons 9.024390e-05   p_joint 8.195122e-04

Joint ci ratio: 2.091464e-01	ci left: 7.483371e-04	ci right 9.253329e-04	k: 350	n:420000
Cons ci ratio: 6.197762e-01	ci left: 6.603131e-05	ci right 1.269366e-04	k: 39	n:420000
KS ci ratio: 6.835334e-03	ci left: 4.376674e-01	ci right 4.406716e-01	k: 184451	n:420000
GABBR2   420000 perm   159 sec   (2650 perm/sec)   p_kst 4.391690e-01   p_cons 9.285714e-05   p_joint 8.333333e-04

Joint ci ratio: 1.576998e-01	ci left: 1.321720e-03	ci right 1.550199e-03	k: 616	n:430000
Cons ci ratio: 5.977638e-01	ci left: 7.039601e-05	ci right 1.320252e-04	k: 42	n:430000
KS ci ratio: 6.779765e-03	ci left: 4.359119e-01	ci right 4.388796e-01	k: 188080	n:430000
GABBR2   430000 perm   164 sec   (2624 perm/sec)   p_kst 4.373953e-01   p_cons 9.767442e-05   p_joint 1.432558e-03

Joint ci ratio: 1.566884e-01	ci left: 1.309147e-03	ci right 1.533864e-03	k: 624	n:440000
Cons ci ratio: 5.977645e-01	ci left: 6.879608e-05	ci right 1.290246e-04	k: 42	n:440000
KS ci ratio: 6.703950e-03	ci left: 4.358063e-01	ci right 4.387400e-01	k: 192400	n:440000
GABBR2   440000 perm   169 sec   (2597 perm/sec)   p_kst 4.372727e-01   p_cons 9.545455e-05   p_joint 1.418182e-03

Joint ci ratio: 1.559431e-01	ci left: 1.292866e-03	ci right 1.513634e-03	k: 630	n:450000
Cons ci ratio: 5.977652e-01	ci left: 6.726726e-05	ci right 1.261575e-04	k: 42	n:450000
KS ci ratio: 6.628527e-03	ci left: 4.358611e-01	ci right 4.387620e-01	k: 196790	n:450000
GABBR2   450000 perm   175 sec   (2571 perm/sec)   p_kst 4.373111e-01   p_cons 9.333333e-05   p_joint 1.400000e-03

Joint ci ratio: 2.524430e-01	ci left: 4.578279e-04	ci right 5.920718e-04	k: 240	n:460000
Cons ci ratio: 7.407870e-01	ci left: 3.868115e-05	ci right 8.539795e-05	k: 27	n:460000
KS ci ratio: 6.555507e-03	ci left: 4.359201e-01	ci right 4.387893e-01	k: 201183	n:460000
GABBR2   460000 perm   181 sec   (2545 perm/sec)   p_kst 4.373543e-01   p_cons 5.869565e-05   p_joint 5.217391e-04

Joint ci ratio: 2.508869e-01	ci left: 4.540672e-04	ci right 5.862595e-04	k: 243	n:470000
Cons ci ratio: 7.407875e-01	ci left: 3.785814e-05	ci right 8.358100e-05	k: 27	n:470000
KS ci ratio: 6.486305e-03	ci left: 4.358663e-01	ci right 4.387047e-01	k: 205524	n:470000
GABBR2   470000 perm   187 sec   (2519 perm/sec)   p_kst 4.372851e-01   p_cons 5.744681e-05   p_joint 5.170213e-04

Joint ci ratio: 2.483552e-01	ci left: 4.543725e-04	ci right 5.851127e-04	k: 248	n:480000
Cons ci ratio: 7.156677e-01	ci left: 4.046235e-05	ci right 8.676727e-05	k: 29	n:480000
KS ci ratio: 6.416913e-03	ci left: 4.359939e-01	ci right 4.388027e-01	k: 209951	n:480000
GABBR2   480000 perm   192 sec   (2494 perm/sec)   p_kst 4.373979e-01   p_cons 6.041667e-05   p_joint 5.166667e-04

Joint ci ratio: 2.473646e-01	ci left: 4.489276e-04	ci right 5.775065e-04	k: 250	n:490000
Cons ci ratio: 7.156682e-01	ci left: 3.963658e-05	ci right 8.499653e-05	k: 29	n:490000
KS ci ratio: 6.352625e-03	ci left: 4.358900e-01	ci right 4.386699e-01	k: 214267	n:490000
GABBR2   490000 perm   198 sec   (2470 perm/sec)   p_kst 4.372796e-01   p_cons 5.918367e-05   p_joint 5.102041e-04

Joint ci ratio: 2.449370e-01	ci left: 4.493322e-04	ci right 5.765719e-04	k: 255	n:500000
Cons ci ratio: 7.156686e-01	ci left: 3.884384e-05	ci right 8.329662e-05	k: 29	n:500000
KS ci ratio: 6.288160e-03	ci left: 4.359524e-01	ci right 4.387043e-01	k: 218664	n:500000
GABBR2   500000 perm   204 sec   (2446 perm/sec)   p_kst 4.373280e-01   p_cons 5.800000e-05   p_joint 5.100000e-04

Joint ci ratio: 2.416550e-01	ci left: 4.534107e-04	ci right 5.798270e-04	k: 262	n:510000
Cons ci ratio: 7.156691e-01	ci left: 3.808219e-05	ci right 8.166337e-05	k: 29	n:510000
KS ci ratio: 6.227205e-03	ci left: 4.358870e-01	ci right 4.386118e-01	k: 222997	n:510000
GABBR2   510000 perm   210 sec   (2423 perm/sec)   p_kst 4.372490e-01   p_cons 5.686275e-05   p_joint 5.137255e-04

Joint ci ratio: 2.393902e-01	ci left: 4.537272e-04	ci right 5.788703e-04	k: 267	n:520000
Cons ci ratio: 6.929427e-01	ci left: 4.050611e-05	ci right 8.461822e-05	k: 31	n:520000
KS ci ratio: 6.168303e-03	ci left: 4.357993e-01	ci right 4.384976e-01	k: 227317	n:520000
GABBR2   520000 perm   217 sec   (2400 perm/sec)   p_kst 4.371481e-01   p_cons 5.961538e-05   p_joint 5.134615e-04

Joint ci ratio: 2.376237e-01	ci left: 4.522625e-04	ci right 5.759456e-04	k: 271	n:530000
Cons ci ratio: 6.722523e-01	ci left: 4.286015e-05	ci right 8.744092e-05	k: 33	n:530000
KS ci ratio: 6.109635e-03	ci left: 4.358281e-01	ci right 4.385009e-01	k: 231697	n:530000
GABBR2   530000 perm   223 sec   (2378 perm/sec)   p_kst 4.371642e-01   p_cons 6.226415e-05   p_joint 5.113208e-04

Joint ci ratio: 2.346234e-01	ci left: 4.560835e-04	ci right 5.790082e-04	k: 278	n:540000
Cons ci ratio: 6.625788e-01	ci left: 4.360406e-05	ci right 8.798333e-05	k: 34	n:540000
KS ci ratio: 6.052064e-03	ci left: 4.359005e-01	ci right 4.385484e-01	k: 236101	n:540000
GABBR2   540000 perm   229 sec   (2356 perm/sec)   p_kst 4.372241e-01   p_cons 6.296296e-05   p_joint 5.148148e-04

Joint ci ratio: 2.317340e-01	ci left: 4.597750e-04	ci right 5.819501e-04	k: 285	n:550000
Cons ci ratio: 6.625793e-01	ci left: 4.281126e-05	ci right 8.638365e-05	k: 34	n:550000
KS ci ratio: 5.995536e-03	ci left: 4.360157e-01	ci right 4.386395e-01	k: 240530	n:550000
GABBR2   550000 perm   236 sec   (2335 perm/sec)   p_kst 4.373273e-01   p_cons 6.181818e-05   p_joint 5.181818e-04

Joint ci ratio: 2.297346e-01	ci left: 4.599772e-04	ci right 5.810019e-04	k: 290	n:560000
Cons ci ratio: 6.533117e-01	ci left: 4.353391e-05	ci right 8.692131e-05	k: 35	n:560000
KS ci ratio: 5.942049e-03	ci left: 4.360038e-01	ci right 4.386040e-01	k: 244890	n:560000
GABBR2   560000 perm   242 sec   (2312 perm/sec)   p_kst 4.373036e-01   p_cons 6.250000e-05   p_joint 5.178571e-04

Joint ci ratio: 2.285599e-01	ci left: 4.568684e-04	ci right 5.763737e-04	k: 293	n:570000
Cons ci ratio: 6.444225e-01	ci left: 4.423539e-05	ci right 8.743609e-05	k: 36	n:570000
KS ci ratio: 5.890054e-03	ci left: 4.359854e-01	ci right 4.385626e-01	k: 249246	n:570000
GABBR2   570000 perm   249 sec   (2293 perm/sec)   p_kst 4.372737e-01   p_cons 6.315789e-05   p_joint 5.140351e-04

Joint ci ratio: 2.266408e-01	ci left: 4.571206e-04	ci right 5.755476e-04	k: 298	n:580000
Cons ci ratio: 6.358866e-01	ci left: 4.491662e-05	ci right 8.792933e-05	k: 37	n:580000
KS ci ratio: 5.838970e-03	ci left: 4.360039e-01	ci right 4.385588e-01	k: 253623	n:580000
GABBR2   580000 perm   255 sec   (2274 perm/sec)   p_kst 4.372810e-01   p_cons 6.379310e-05   p_joint 5.137931e-04

Joint ci ratio: 2.251401e-01	ci left: 4.557688e-04	ci right 5.729553e-04	k: 302	n:590000
Cons ci ratio: 6.358870e-01	ci left: 4.415531e-05	ci right 8.643902e-05	k: 37	n:590000
KS ci ratio: 5.789292e-03	ci left: 4.360134e-01	ci right 4.385466e-01	k: 257995	n:590000
GABBR2   590000 perm   262 sec   (2255 perm/sec)   p_kst 4.372797e-01   p_cons 6.271186e-05   p_joint 5.118644e-04

Joint ci ratio: 2.233052e-01	ci left: 4.560380e-04	ci right 5.722066e-04	k: 307	n:600000
Cons ci ratio: 6.358873e-01	ci left: 4.341938e-05	ci right 8.499839e-05	k: 37	n:600000
KS ci ratio: 5.738587e-03	ci left: 4.362176e-01	ci right 4.387297e-01	k: 262484	n:600000
GABBR2   600000 perm   268 sec   (2237 perm/sec)   p_kst 4.374733e-01   p_cons 6.166667e-05   p_joint 5.116667e-04

Joint ci ratio: 2.293455e-01	ci left: 4.238183e-04	ci right 5.351135e-04	k: 291	n:610000
Cons ci ratio: 6.358876e-01	ci left: 4.270759e-05	ci right 8.360499e-05	k: 37	n:610000
KS ci ratio: 5.692146e-03	ci left: 4.361595e-01	ci right 4.386509e-01	k: 266817	n:610000
GABBR2   610000 perm   275 sec   (2219 perm/sec)   p_kst 4.374049e-01   p_cons 6.065574e-05   p_joint 4.770492e-04

Joint ci ratio: 2.255155e-01	ci left: 4.321930e-04	ci right 5.435287e-04	k: 301	n:620000
Cons ci ratio: 6.276821e-01	ci left: 4.337303e-05	ci right 8.412480e-05	k: 38	n:620000
KS ci ratio: 5.647074e-03	ci left: 4.360809e-01	ci right 4.385520e-01	k: 271136	n:620000
GABBR2   620000 perm   282 sec   (2201 perm/sec)   p_kst 4.373161e-01   p_cons 6.129032e-05   p_joint 4.854839e-04

Joint ci ratio: 2.236715e-01	ci left: 4.328228e-04	ci right 5.432835e-04	k: 306	n:630000
Cons ci ratio: 6.197863e-01	ci left: 4.402070e-05	ci right 8.462489e-05	k: 39	n:630000
KS ci ratio: 5.601303e-03	ci left: 4.361587e-01	ci right 4.386101e-01	k: 275552	n:630000
GABBR2   630000 perm   289 sec   (2182 perm/sec)   p_kst 4.373841e-01   p_cons 6.190476e-05   p_joint 4.857143e-04

Joint ci ratio: 2.222286e-01	ci left: 4.319609e-04	ci right 5.413932e-04	k: 310	n:640000
Cons ci ratio: 6.197866e-01	ci left: 4.333287e-05	ci right 8.330264e-05	k: 39	n:640000
KS ci ratio: 5.557033e-03	ci left: 4.361982e-01	ci right 4.386305e-01	k: 279945	n:640000
GABBR2   640000 perm   296 sec   (2164 perm/sec)   p_kst 4.374141e-01   p_cons 6.093750e-05   p_joint 4.843750e-04

Joint ci ratio: 2.197687e-01	ci left: 4.354886e-04	ci right 5.444283e-04	k: 317	n:650000
Cons ci ratio: 6.121814e-01	ci left: 4.396433e-05	ci right 8.379699e-05	k: 40	n:650000
KS ci ratio: 5.514606e-03	ci left: 4.361643e-01	ci right 4.385778e-01	k: 284291	n:650000
GABBR2   650000 perm   303 sec   (2147 perm/sec)   p_kst 4.373708e-01   p_cons 6.153846e-05   p_joint 4.876923e-04

Joint ci ratio: 2.173888e-01	ci left: 4.389158e-04	ci right 5.473651e-04	k: 324	n:660000
Cons ci ratio: 6.048494e-01	ci left: 4.457961e-05	ci right 8.427351e-05	k: 41	n:660000
KS ci ratio: 5.473035e-03	ci left: 4.361406e-01	ci right 4.385357e-01	k: 288643	n:660000
GABBR2   660000 perm   310 sec   (2128 perm/sec)   p_kst 4.373379e-01   p_cons 6.212121e-05   p_joint 4.909091e-04

Joint ci ratio: 2.160634e-01	ci left: 4.380109e-04	ci right 5.454892e-04	k: 328	n:670000
Cons ci ratio: 6.048497e-01	ci left: 4.391424e-05	ci right 8.301571e-05	k: 41	n:670000
KS ci ratio: 5.432473e-03	ci left: 4.361102e-01	ci right 4.384873e-01	k: 292990	n:670000
GABBR2   670000 perm   318 sec   (2110 perm/sec)   p_kst 4.372985e-01   p_cons 6.119403e-05   p_joint 4.895522e-04

Joint ci ratio: 2.150853e-01	ci left: 4.357431e-04	ci right 5.421170e-04	k: 331	n:680000
Cons ci ratio: 6.048500e-01	ci left: 4.326844e-05	ci right 8.179490e-05	k: 41	n:680000
KS ci ratio: 5.392799e-03	ci left: 4.360808e-01	ci right 4.384403e-01	k: 297337	n:680000
GABBR2   680000 perm   325 sec   (2093 perm/sec)   p_kst 4.372603e-01   p_cons 6.029412e-05   p_joint 4.867647e-04

Joint ci ratio: 2.134837e-01	ci left: 4.362855e-04	ci right 5.418949e-04	k: 336	n:690000
Cons ci ratio: 6.048503e-01	ci left: 4.264135e-05	ci right 8.060948e-05	k: 41	n:690000
KS ci ratio: 5.353856e-03	ci left: 4.360639e-01	ci right 4.384062e-01	k: 301692	n:690000
GABBR2   690000 perm   332 sec   (2076 perm/sec)   p_kst 4.372348e-01   p_cons 5.942029e-05   p_joint 4.869565e-04

Joint ci ratio: 2.119174e-01	ci left: 4.368153e-04	ci right 5.416763e-04	k: 341	n:700000
Cons ci ratio: 5.977756e-01	ci left: 4.324305e-05	ci right 8.110171e-05	k: 42	n:700000
KS ci ratio: 5.314479e-03	ci left: 4.361646e-01	ci right 4.384902e-01	k: 306129	n:700000
GABBR2   700000 perm   340 sec   (2060 perm/sec)   p_kst 4.373271e-01   p_cons 6.000000e-05   p_joint 4.871429e-04

Joint ci ratio: 2.141218e-01	ci left: 4.213293e-04	ci right 5.236632e-04	k: 334	n:710000
Cons ci ratio: 5.909435e-01	ci left: 4.383035e-05	ci right 8.157762e-05	k: 43	n:710000
KS ci ratio: 5.276381e-03	ci left: 4.362232e-01	ci right 4.385323e-01	k: 310538	n:710000
GABBR2   710000 perm   347 sec   (2045 perm/sec)   p_kst 4.373775e-01   p_cons 6.056338e-05   p_joint 4.704225e-04

Joint ci ratio: 2.190858e-01	ci left: 3.957736e-04	ci right 4.944293e-04	k: 319	n:720000
Cons ci ratio: 5.909438e-01	ci left: 4.322159e-05	ci right 8.044461e-05	k: 43	n:720000
KS ci ratio: 5.239298e-03	ci left: 4.362607e-01	ci right 4.385537e-01	k: 314933	n:720000
GABBR2   720000 perm   355 sec   (2030 perm/sec)   p_kst 4.374069e-01   p_cons 5.972222e-05   p_joint 4.430556e-04

Joint ci ratio: 2.225936e-01	ci left: 3.774107e-04	ci right 4.732017e-04	k: 309	n:730000
Cons ci ratio: 5.909440e-01	ci left: 4.262951e-05	ci right 7.934264e-05	k: 43	n:730000
KS ci ratio: 5.204130e-03	ci left: 4.361890e-01	ci right 4.384663e-01	k: 319249	n:730000
GABBR2   730000 perm   362 sec   (2016 perm/sec)   p_kst 4.373274e-01   p_cons 5.890411e-05   p_joint 4.232877e-04

Joint ci ratio: 2.251519e-01	ci left: 3.633812e-04	ci right 4.568185e-04	k: 302	n:740000
Cons ci ratio: 5.843409e-01	ci left: 4.320366e-05	ci right 7.982074e-05	k: 44	n:740000
KS ci ratio: 5.168553e-03	ci left: 4.362247e-01	ci right 4.384866e-01	k: 323643	n:740000
GABBR2   740000 perm   370 sec   (1999 perm/sec)   p_kst 4.373554e-01   p_cons 5.945946e-05   p_joint 4.081081e-04

Joint ci ratio: 2.240456e-01	ci left: 3.623111e-04	ci right 4.549523e-04	k: 305	n:750000
Cons ci ratio: 5.843412e-01	ci left: 4.262760e-05	ci right 7.875647e-05	k: 44	n:750000
KS ci ratio: 5.134962e-03	ci left: 4.361383e-01	ci right 4.383849e-01	k: 327946	n:750000
GABBR2   750000 perm   378 sec   (1983 perm/sec)   p_kst 4.372613e-01   p_cons 5.866667e-05   p_joint 4.066667e-04

Joint ci ratio: 2.236809e-01	ci left: 3.587858e-04	ci right 4.503557e-04	k: 306	n:760000
Cons ci ratio: 5.843414e-01	ci left: 4.206671e-05	ci right 7.772021e-05	k: 44	n:760000
KS ci ratio: 5.100122e-03	ci left: 4.362370e-01	ci right 4.384688e-01	k: 332388	n:760000
GABBR2   760000 perm   386 sec   (1967 perm/sec)   p_kst 4.373526e-01   p_cons 5.789474e-05   p_joint 4.026316e-04

Joint ci ratio: 2.225961e-01	ci left: 3.578045e-04	ci right 4.486204e-04	k: 309	n:770000
Cons ci ratio: 5.779548e-01	ci left: 4.262798e-05	ci right 7.819863e-05	k: 45	n:770000
KS ci ratio: 5.067625e-03	ci left: 4.361734e-01	ci right 4.383907e-01	k: 336707	n:770000
GABBR2   770000 perm   394 sec   (1952 perm/sec)   p_kst 4.372818e-01   p_cons 5.844156e-05   p_joint 4.012987e-04

Joint ci ratio: 2.211737e-01	ci left: 3.580605e-04	ci right 4.482816e-04	k: 313	n:780000
Cons ci ratio: 5.779551e-01	ci left: 4.208147e-05	ci right 7.719609e-05	k: 45	n:780000
KS ci ratio: 5.036266e-03	ci left: 4.360603e-01	ci right 4.382632e-01	k: 340986	n:780000
GABBR2   780000 perm   403 sec   (1938 perm/sec)   p_kst 4.371615e-01   p_cons 5.769231e-05   p_joint 4.012821e-04

Joint ci ratio: 2.197783e-01	ci left: 3.583118e-04	ci right 4.479496e-04	k: 317	n:790000
Cons ci ratio: 5.779553e-01	ci left: 4.154879e-05	ci right 7.621894e-05	k: 45	n:790000
KS ci ratio: 5.004748e-03	ci left: 4.360222e-01	ci right 4.382111e-01	k: 345322	n:790000
GABBR2   790000 perm   410 sec   (1925 perm/sec)   p_kst 4.371165e-01   p_cons 5.696203e-05   p_joint 4.012658e-04

Joint ci ratio: 2.233196e-01	ci left: 3.420262e-04	ci right 4.291582e-04	k: 307	n:800000
Cons ci ratio: 5.717736e-01	ci left: 4.209752e-05	ci right 7.669621e-05	k: 46	n:800000
KS ci ratio: 4.973499e-03	ci left: 4.360164e-01	ci right 4.381916e-01	k: 349683	n:800000
GABBR2   800000 perm   419 sec   (1911 perm/sec)   p_kst 4.371038e-01   p_cons 5.750000e-05   p_joint 3.837500e-04

Joint ci ratio: 2.208239e-01	ci left: 3.459650e-04	ci right 4.329817e-04	k: 314	n:810000
Cons ci ratio: 5.543543e-01	ci left: 4.475399e-05	ci right 7.997527e-05	k: 49	n:810000
KS ci ratio: 4.942989e-03	ci left: 4.359947e-01	ci right 4.381564e-01	k: 354031	n:810000
GABBR2   810000 perm   427 sec   (1897 perm/sec)   p_kst 4.370753e-01   p_cons 6.049383e-05   p_joint 3.876543e-04

Joint ci ratio: 1.617377e-01	ci left: 6.579554e-04	ci right 7.748865e-04	k: 586	n:820000
Cons ci ratio: 5.488924e-01	ci left: 4.525760e-05	ci right 8.038796e-05	k: 50	n:820000
KS ci ratio: 4.913460e-03	ci left: 4.359309e-01	ci right 4.380793e-01	k: 358344	n:820000
GABBR2   820000 perm   435 sec   (1885 perm/sec)   p_kst 4.370049e-01   p_cons 6.097561e-05   p_joint 7.146341e-04

Joint ci ratio: 1.617384e-01	ci left: 6.500280e-04	ci right 7.655508e-04	k: 586	n:830000
Cons ci ratio: 5.488926e-01	ci left: 4.471232e-05	ci right 7.941944e-05	k: 50	n:830000
KS ci ratio: 4.883472e-03	ci left: 4.359675e-01	ci right 4.381029e-01	k: 362739	n:830000
GABBR2   830000 perm   444 sec   (1871 perm/sec)   p_kst 4.370349e-01   p_cons 6.024096e-05   p_joint 7.060241e-04

Joint ci ratio: 1.614641e-01	ci left: 6.445741e-04	ci right 7.589145e-04	k: 588	n:840000
Cons ci ratio: 5.488928e-01	ci left: 4.418003e-05	ci right 7.847398e-05	k: 50	n:840000
KS ci ratio: 4.854909e-03	ci left: 4.359139e-01	ci right 4.380365e-01	k: 367059	n:840000
GABBR2   840000 perm   452 sec   (1857 perm/sec)   p_kst 4.369750e-01   p_cons 5.952381e-05   p_joint 7.000000e-04

Joint ci ratio: 1.367428e-01	ci left: 8.998266e-04	ci right 1.033024e-03	k: 820	n:850000
Cons ci ratio: 5.384363e-01	ci left: 4.568984e-05	ci right 8.022404e-05	k: 52	n:850000
KS ci ratio: 4.826413e-03	ci left: 4.359052e-01	ci right 4.380153e-01	k: 371416	n:850000
GABBR2   850000 perm   461 sec   (1844 perm/sec)   p_kst 4.369600e-01   p_cons 6.117647e-05   p_joint 9.647059e-04

Joint ci ratio: 1.362461e-01	ci left: 8.961019e-04	ci right 1.028227e-03	k: 826	n:860000
Cons ci ratio: 5.384365e-01	ci left: 4.515856e-05	ci right 7.929121e-05	k: 52	n:860000
KS ci ratio: 4.797631e-03	ci left: 4.359769e-01	ci right 4.380747e-01	k: 375842	n:860000
GABBR2   860000 perm   470 sec   (1831 perm/sec)   p_kst 4.370256e-01   p_cons 6.046512e-05   p_joint 9.604651e-04

Joint ci ratio: 1.647162e-01	ci left: 5.969882e-04	ci right 7.052318e-04	k: 565	n:870000
Cons ci ratio: 5.285557e-01	ci left: 4.662845e-05	ci right 8.098577e-05	k: 54	n:870000
KS ci ratio: 4.801646e-03	ci left: 4.327307e-01	ci right 4.348146e-01	k: 377382	n:870000
GABBR2   870000 perm   478 sec   (1818 perm/sec)   p_kst 4.337724e-01   p_cons 6.206897e-05   p_joint 6.494253e-04

Joint ci ratio: 1.639936e-01	ci left: 5.956524e-04	ci right 7.031332e-04	k: 570	n:880000
Cons ci ratio: 5.238151e-01	ci left: 4.708389e-05	ci right 8.135157e-05	k: 55	n:880000
KS ci ratio: 4.774835e-03	ci left: 4.326801e-01	ci right 4.347521e-01	k: 381670	n:880000
GABBR2   880000 perm   487 sec   (1805 perm/sec)   p_kst 4.337159e-01   p_cons 6.250000e-05   p_joint 6.477273e-04

Joint ci ratio: 1.627160e-01	ci left: 5.986587e-04	ci right 7.057581e-04	k: 579	n:890000
Cons ci ratio: 5.191998e-01	ci left: 4.753045e-05	ci right 8.170784e-05	k: 56	n:890000
KS ci ratio: 4.748392e-03	ci left: 4.326386e-01	ci right 4.346989e-01	k: 385965	n:890000
GABBR2   890000 perm   496 sec   (1793 perm/sec)   p_kst 4.336685e-01   p_cons 6.292135e-05   p_joint 6.505618e-04

Joint ci ratio: 1.621580e-01	ci left: 5.962706e-04	ci right 7.025414e-04	k: 583	n:900000
Cons ci ratio: 5.192000e-01	ci left: 4.700233e-05	ci right 8.079998e-05	k: 56	n:900000
KS ci ratio: 4.722117e-03	ci left: 4.326258e-01	ci right 4.346746e-01	k: 390285	n:900000
GABBR2   900000 perm   506 sec   (1780 perm/sec)   p_kst 4.336500e-01   p_cons 6.222222e-05   p_joint 6.477778e-04

Joint ci ratio: 1.610585e-01	ci left: 5.981539e-04	ci right 7.039676e-04	k: 591	n:910000
Cons ci ratio: 5.147045e-01	ci left: 4.744126e-05	ci right 8.115322e-05	k: 57	n:910000
KS ci ratio: 4.696231e-03	ci left: 4.326177e-01	ci right 4.346552e-01	k: 394609	n:910000
GABBR2   910000 perm   515 sec   (1768 perm/sec)   p_kst 4.336363e-01   p_cons 6.263736e-05   p_joint 6.494505e-04

Joint ci ratio: 1.605174e-01	ci left: 5.958251e-04	ci right 7.008384e-04	k: 595	n:920000
Cons ci ratio: 5.060530e-01	ci left: 4.881941e-05	ci right 8.272282e-05	k: 59	n:920000
KS ci ratio: 4.670487e-03	ci left: 4.326392e-01	ci right 4.346656e-01	k: 398960	n:920000
GABBR2   920000 perm   524 sec   (1755 perm/sec)   p_kst 4.336522e-01   p_cons 6.413043e-05   p_joint 6.467391e-04

Joint ci ratio: 1.597155e-01	ci left: 5.956115e-04	ci right 7.000125e-04	k: 601	n:930000
Cons ci ratio: 5.060532e-01	ci left: 4.829446e-05	ci right 8.183333e-05	k: 59	n:930000
KS ci ratio: 4.645559e-03	ci left: 4.326183e-01	ci right 4.346337e-01	k: 403272	n:930000
GABBR2   930000 perm   533 sec   (1744 perm/sec)   p_kst 4.336258e-01   p_cons 6.344086e-05   p_joint 6.462366e-04

Joint ci ratio: 1.591877e-01	ci left: 5.933607e-04	ci right 6.969906e-04	k: 605	n:940000
Cons ci ratio: 5.018880e-01	ci left: 4.870919e-05	ci right 8.216084e-05	k: 60	n:940000
KS ci ratio: 4.621115e-03	ci left: 4.325883e-01	ci right 4.345930e-01	k: 407575	n:940000
GABBR2   940000 perm   543 sec   (1732 perm/sec)   p_kst 4.335904e-01   p_cons 6.382979e-05   p_joint 6.436170e-04

Joint ci ratio: 1.599827e-01	ci left: 5.810509e-04	ci right 6.830864e-04	k: 599	n:950000
Cons ci ratio: 5.018882e-01	ci left: 4.819646e-05	ci right 8.129599e-05	k: 60	n:950000
KS ci ratio: 4.595861e-03	ci left: 4.326863e-01	ci right 4.346804e-01	k: 411999	n:950000
GABBR2   950000 perm   552 sec   (1720 perm/sec)   p_kst 4.336832e-01   p_cons 6.315789e-05   p_joint 6.305263e-04

Joint ci ratio: 1.589266e-01	ci left: 5.829991e-04	ci right 6.846364e-04	k: 607	n:960000
Cons ci ratio: 5.018884e-01	ci left: 4.769441e-05	ci right 8.044917e-05	k: 60	n:960000
KS ci ratio: 4.571812e-03	ci left: 4.326969e-01	ci right 4.346806e-01	k: 416341	n:960000
GABBR2   960000 perm   562 sec   (1709 perm/sec)   p_kst 4.336885e-01   p_cons 6.250000e-05   p_joint 6.322917e-04

Joint ci ratio: 1.582772e-01	ci left: 5.819389e-04	ci right 6.829374e-04	k: 612	n:970000
Cons ci ratio: 5.018885e-01	ci left: 4.720271e-05	ci right 7.961980e-05	k: 60	n:970000
KS ci ratio: 4.547878e-03	ci left: 4.327351e-01	ci right 4.347086e-01	k: 420710	n:970000
GABBR2   970000 perm   571 sec   (1698 perm/sec)   p_kst 4.337216e-01   p_cons 6.185567e-05   p_joint 6.309278e-04

Joint ci ratio: 1.568755e-01	ci left: 5.867827e-04	ci right 6.876352e-04	k: 623	n:980000
Cons ci ratio: 5.018887e-01	ci left: 4.672105e-05	ci right 7.880736e-05	k: 60	n:980000
KS ci ratio: 4.525332e-03	ci left: 4.326624e-01	ci right 4.346258e-01	k: 424971	n:980000
GABBR2   980000 perm   581 sec   (1686 perm/sec)   p_kst 4.336439e-01   p_cons 6.122449e-05   p_joint 6.357143e-04

Joint ci ratio: 1.562509e-01	ci left: 5.857082e-04	ci right 6.859377e-04	k: 628	n:990000
Cons ci ratio: 5.018889e-01	ci left: 4.624912e-05	ci right 7.801133e-05	k: 60	n:990000
KS ci ratio: 4.502330e-03	ci left: 4.326770e-01	ci right 4.346304e-01	k: 429317	n:990000
GABBR2   990000 perm   591 sec   (1674 perm/sec)   p_kst 4.336535e-01   p_cons 6.060606e-05   p_joint 6.343434e-04

Joint ci ratio: 1.555110e-01	ci left: 5.856171e-04	ci right 6.853122e-04	k: 634	n:1000000
Cons ci ratio: 5.018890e-01	ci left: 4.578662e-05	ci right 7.723123e-05	k: 60	n:1000000
KS ci ratio: 4.478873e-03	ci left: 4.327794e-01	ci right 4.347230e-01	k: 433751	n:1000000
GABBR2   1000000 perm   601 sec   (1663 perm/sec)   p_kst 4.337510e-01   p_cons 6.000000e-05   p_joint 6.340000e-04

Joint ci ratio: 1.550237e-01	ci left: 5.836254e-04	ci right 6.826411e-04	k: 638	n:1010000
Cons ci ratio: 5.018892e-01	ci left: 4.533329e-05	ci right 7.646657e-05	k: 60	n:1010000
KS ci ratio: 4.456587e-03	ci left: 4.327906e-01	ci right 4.347246e-01	k: 438095	n:1010000
GABBR2   1010000 perm   611 sec   (1652 perm/sec)   p_kst 4.337574e-01   p_cons 5.940594e-05   p_joint 6.316832e-04

Joint ci ratio: 1.539431e-01	ci left: 5.863861e-04	ci right 6.851128e-04	k: 647	n:1020000
Cons ci ratio: 5.018893e-01	ci left: 4.488884e-05	ci right 7.571690e-05	k: 60	n:1020000
KS ci ratio: 4.435206e-03	ci left: 4.327379e-01	ci right 4.346624e-01	k: 442374	n:1020000
GABBR2   1020000 perm   621 sec   (1641 perm/sec)   p_kst 4.337000e-01   p_cons 5.882353e-05   p_joint 6.343137e-04

Joint ci ratio: 1.532354e-01	ci left: 5.862944e-04	ci right 6.845102e-04	k: 653	n:1030000
Cons ci ratio: 4.938582e-01	ci left: 4.615083e-05	ci right 7.716556e-05	k: 62	n:1030000
KS ci ratio: 4.413440e-03	ci left: 4.327630e-01	ci right 4.346781e-01	k: 446732	n:1030000
GABBR2   1030000 perm   632 sec   (1631 perm/sec)   p_kst 4.337204e-01   p_cons 6.019417e-05   p_joint 6.339806e-04

Joint ci ratio: 1.528854e-01	ci left: 5.834310e-04	ci right 6.809235e-04	k: 656	n:1040000
Cons ci ratio: 4.899847e-01	ci left: 4.654928e-05	ci right 7.750354e-05	k: 63	n:1040000
KS ci ratio: 4.392147e-03	ci left: 4.327703e-01	ci right 4.346762e-01	k: 451072	n:1040000
GABBR2   1040000 perm   642 sec   (1621 perm/sec)   p_kst 4.337231e-01   p_cons 6.057692e-05   p_joint 6.307692e-04

Joint ci ratio: 1.518487e-01	ci left: 5.861192e-04	ci right 6.833364e-04	k: 665	n:1050000
Cons ci ratio: 4.899848e-01	ci left: 4.610595e-05	ci right 7.676542e-05	k: 63	n:1050000
KS ci ratio: 4.371616e-03	ci left: 4.327261e-01	ci right 4.346229e-01	k: 455358	n:1050000
GABBR2   1050000 perm   652 sec   (1611 perm/sec)   p_kst 4.336743e-01   p_cons 6.000000e-05   p_joint 6.333333e-04

Joint ci ratio: 1.513949e-01	ci left: 5.842202e-04	ci right 6.808065e-04	k: 669	n:1060000
Cons ci ratio: 4.899850e-01	ci left: 4.567098e-05	ci right 7.604122e-05	k: 63	n:1060000
KS ci ratio: 4.350977e-03	ci left: 4.327270e-01	ci right 4.346148e-01	k: 459691	n:1060000
GABBR2   1060000 perm   663 sec   (1600 perm/sec)   p_kst 4.336708e-01   p_cons 5.943396e-05   p_joint 6.311321e-04

Joint ci ratio: 1.502773e-01	ci left: 5.877533e-04	ci right 6.841420e-04	k: 679	n:1070000
Cons ci ratio: 4.825035e-01	ci left: 4.688407e-05	ci right 7.742724e-05	k: 65	n:1070000
KS ci ratio: 4.330036e-03	ci left: 4.327953e-01	ci right 4.346743e-01	k: 464096	n:1070000
GABBR2   1070000 perm   673 sec   (1590 perm/sec)   p_kst 4.337346e-01   p_cons 6.074766e-05   p_joint 6.345794e-04

Joint ci ratio: 1.496187e-01	ci left: 5.876583e-04	ci right 6.835712e-04	k: 685	n:1080000
Cons ci ratio: 4.788891e-01	ci left: 4.726363e-05	ci right 7.774767e-05	k: 66	n:1080000
KS ci ratio: 4.309929e-03	ci left: 4.328012e-01	ci right 4.346714e-01	k: 468435	n:1080000
GABBR2   1080000 perm   683 sec   (1580 perm/sec)   p_kst 4.337361e-01   p_cons 6.111111e-05   p_joint 6.342593e-04

Joint ci ratio: 1.489687e-01	ci left: 5.875659e-04	ci right 6.830100e-04	k: 691	n:1090000
Cons ci ratio: 4.718974e-01	ci left: 4.844496e-05	ci right 7.908760e-05	k: 68	n:1090000
KS ci ratio: 4.290300e-03	ci left: 4.327840e-01	ci right 4.346457e-01	k: 472749	n:1090000
GABBR2   1090000 perm   694 sec   (1571 perm/sec)   p_kst 4.337147e-01   p_cons 6.238532e-05   p_joint 6.339450e-04

Joint ci ratio: 1.484335e-01	ci left: 5.866007e-04	ci right 6.815153e-04	k: 696	n:1100000
Cons ci ratio: 4.718975e-01	ci left: 4.800455e-05	ci right 7.836863e-05	k: 68	n:1100000
KS ci ratio: 4.270969e-03	ci left: 4.327636e-01	ci right 4.346168e-01	k: 477059	n:1100000
GABBR2   1100000 perm   704 sec   (1562 perm/sec)   p_kst 4.336900e-01   p_cons 6.181818e-05   p_joint 6.327273e-04

Joint ci ratio: 1.480095e-01	ci left: 5.847859e-04	ci right 6.791127e-04	k: 700	n:1110000
Cons ci ratio: 4.718977e-01	ci left: 4.757207e-05	ci right 7.766261e-05	k: 68	n:1110000
KS ci ratio: 4.251936e-03	ci left: 4.327391e-01	ci right 4.345838e-01	k: 481364	n:1110000
GABBR2   1110000 perm   715 sec   (1552 perm/sec)   p_kst 4.336613e-01   p_cons 6.126126e-05   p_joint 6.306306e-04

Joint ci ratio: 1.470683e-01	ci left: 5.873038e-04	ci right 6.813813e-04	k: 709	n:1120000
Cons ci ratio: 4.685148e-01	ci left: 4.793434e-05	ci right 7.796714e-05	k: 69	n:1120000
KS ci ratio: 4.232385e-03	ci left: 4.328042e-01	ci right 4.346408e-01	k: 485769	n:1120000
GABBR2   1120000 perm   726 sec   (1543 perm/sec)   p_kst 4.337223e-01   p_cons 6.160714e-05   p_joint 6.330357e-04

Joint ci ratio: 1.463486e-01	ci left: 5.880737e-04	ci right 6.817732e-04	k: 716	n:1130000
Cons ci ratio: 4.652036e-01	ci left: 4.829096e-05	ci right 7.826555e-05	k: 70	n:1130000
KS ci ratio: 4.213588e-03	ci left: 4.328116e-01	ci right 4.346400e-01	k: 490110	n:1130000
GABBR2   1130000 perm   738 sec   (1531 perm/sec)   p_kst 4.337257e-01   p_cons 6.194690e-05   p_joint 6.336283e-04

Joint ci ratio: 1.455388e-01	ci left: 5.896765e-04	ci right 6.830663e-04	k: 724	n:1140000
Cons ci ratio: 4.619616e-01	ci left: 4.864206e-05	ci right 7.855799e-05	k: 71	n:1140000
KS ci ratio: 4.196020e-03	ci left: 4.327041e-01	ci right 4.345244e-01	k: 494320	n:1140000
GABBR2   1140000 perm   749 sec   (1523 perm/sec)   p_kst 4.336140e-01   p_cons 6.228070e-05   p_joint 6.350877e-04

Joint ci ratio: 1.251025e-01	ci left: 7.996694e-04	ci right 9.072180e-04	k: 980	n:1150000
Cons ci ratio: 4.556759e-01	ci left: 4.975714e-05	ci right 7.981373e-05	k: 73	n:1150000
KS ci ratio: 4.178137e-03	ci left: 4.326610e-01	ci right 4.344733e-01	k: 498602	n:1150000
GABBR2   1150000 perm   760 sec   (1514 perm/sec)   p_kst 4.335670e-01   p_cons 6.347826e-05   p_joint 8.521739e-04

Joint ci ratio: 1.260061e-01	ci left: 7.810853e-04	ci right 8.869499e-04	k: 966	n:1160000
Cons ci ratio: 4.556760e-01	ci left: 4.932820e-05	ci right 7.912569e-05	k: 73	n:1160000
KS ci ratio: 4.159867e-03	ci left: 4.326910e-01	ci right 4.344955e-01	k: 502968	n:1160000
GABBR2   1160000 perm   771 sec   (1505 perm/sec)   p_kst 4.335931e-01   p_cons 6.293103e-05   p_joint 8.327586e-04

Joint ci ratio: 1.256818e-01	ci left: 7.785482e-04	ci right 8.837772e-04	k: 971	n:1170000
Cons ci ratio: 4.526279e-01	ci left: 4.966349e-05	ci right 7.940126e-05	k: 74	n:1170000
KS ci ratio: 4.142008e-03	ci left: 4.327001e-01	ci right 4.344969e-01	k: 507310	n:1170000
GABBR2   1170000 perm   782 sec   (1496 perm/sec)   p_kst 4.335983e-01   p_cons 6.324786e-05   p_joint 8.299145e-04

Joint ci ratio: 1.250401e-01	ci left: 7.801592e-04	ci right 8.850277e-04	k: 981	n:1180000
Cons ci ratio: 4.526280e-01	ci left: 4.924261e-05	ci right 7.872837e-05	k: 74	n:1180000
KS ci ratio: 4.125061e-03	ci left: 4.326276e-01	ci right 4.344168e-01	k: 511556	n:1180000
GABBR2   1180000 perm   793 sec   (1488 perm/sec)   p_kst 4.335220e-01   p_cons 6.271186e-05   p_joint 8.313559e-04

Joint ci ratio: 1.244710e-01	ci left: 7.809303e-04	ci right 8.853894e-04	k: 990	n:1190000
Cons ci ratio: 4.496403e-01	ci left: 4.957364e-05	ci right 7.900202e-05	k: 75	n:1190000
KS ci ratio: 4.107117e-03	ci left: 4.327001e-01	ci right 4.344817e-01	k: 515973	n:1190000
GABBR2   1190000 perm   804 sec   (1479 perm/sec)   p_kst 4.335908e-01   p_cons 6.302521e-05   p_joint 8.319328e-04

Joint ci ratio: 1.234778e-01	ci left: 7.873425e-04	ci right 8.917576e-04	k: 1006	n:1200000
Cons ci ratio: 4.467109e-01	ci left: 4.989978e-05	ci right 7.927048e-05	k: 76	n:1200000
KS ci ratio: 4.090592e-03	ci left: 4.326289e-01	ci right 4.344031e-01	k: 520219	n:1200000
GABBR2   1200000 perm   816 sec   (1471 perm/sec)   p_kst 4.335158e-01   p_cons 6.333333e-05   p_joint 8.383333e-04

Joint ci ratio: 1.237244e-01	ci left: 7.776318e-04	ci right 8.809800e-04	k: 1002	n:1210000
Cons ci ratio: 4.467111e-01	ci left: 4.948738e-05	ci right 7.861536e-05	k: 76	n:1210000
KS ci ratio: 4.074121e-03	ci left: 4.325763e-01	ci right 4.343430e-01	k: 524486	n:1210000
GABBR2   1210000 perm   827 sec   (1462 perm/sec)   p_kst 4.334595e-01   p_cons 6.280992e-05   p_joint 8.280992e-04

Joint ci ratio: 1.231730e-01	ci left: 7.784070e-04	ci right 8.813636e-04	k: 1011	n:1220000
Cons ci ratio: 4.438382e-01	ci left: 4.980949e-05	ci right 7.888199e-05	k: 77	n:1220000
KS ci ratio: 4.057414e-03	ci left: 4.325770e-01	ci right 4.343365e-01	k: 528817	n:1220000
GABBR2   1220000 perm   839 sec   (1454 perm/sec)   p_kst 4.334566e-01   p_cons 6.311475e-05   p_joint 8.286885e-04

Joint ci ratio: 1.229305e-01	ci left: 7.752303e-04	ci right 8.775502e-04	k: 1015	n:1230000
Cons ci ratio: 4.438383e-01	ci left: 4.940453e-05	ci right 7.824068e-05	k: 77	n:1230000
KS ci ratio: 4.040864e-03	ci left: 4.325833e-01	ci right 4.343357e-01	k: 533155	n:1230000
GABBR2   1230000 perm   850 sec   (1446 perm/sec)   p_kst 4.334593e-01   p_cons 6.260163e-05   p_joint 8.252033e-04

Joint ci ratio: 1.222702e-01	ci left: 7.775775e-04	ci right 8.796160e-04	k: 1026	n:1240000
Cons ci ratio: 4.410202e-01	ci left: 4.972270e-05	ci right 7.850546e-05	k: 78	n:1240000
KS ci ratio: 4.024687e-03	ci left: 4.325687e-01	ci right 4.343139e-01	k: 537467	n:1240000
GABBR2   1240000 perm   862 sec   (1438 perm/sec)   p_kst 4.334411e-01   p_cons 6.290323e-05   p_joint 8.274194e-04

Joint ci ratio: 1.419633e-01	ci left: 5.663200e-04	ci right 6.536208e-04	k: 761	n:1250000
Cons ci ratio: 4.382551e-01	ci left: 5.003634e-05	ci right 7.876544e-05	k: 79	n:1250000
KS ci ratio: 4.040781e-03	ci left: 4.286448e-01	ci right 4.303811e-01	k: 536891	n:1250000
GABBR2   1250000 perm   874 sec   (1430 perm/sec)   p_kst 4.295128e-01   p_cons 6.320000e-05   p_joint 6.088000e-04

Joint ci ratio: 1.414076e-01	ci left: 5.664185e-04	ci right 6.533640e-04	k: 767	n:1260000
Cons ci ratio: 4.355414e-01	ci left: 5.034557e-05	ci right 7.902076e-05	k: 80	n:1260000
KS ci ratio: 4.025250e-03	ci left: 4.285831e-01	ci right 4.303125e-01	k: 541104	n:1260000
GABBR2   1260000 perm   886 sec   (1422 perm/sec)   p_kst 4.294476e-01   p_cons 6.349206e-05   p_joint 6.087302e-04

Joint ci ratio: 1.407675e-01	ci left: 5.672758e-04	ci right 6.539256e-04	k: 774	n:1270000
Cons ci ratio: 4.355415e-01	ci left: 4.994914e-05	ci right 7.839855e-05	k: 80	n:1270000
KS ci ratio: 4.009303e-03	ci left: 4.285948e-01	ci right 4.303174e-01	k: 545409	n:1270000
GABBR2   1270000 perm   898 sec   (1415 perm/sec)   p_kst 4.294559e-01   p_cons 6.299213e-05   p_joint 6.094488e-04

Joint ci ratio: 1.397788e-01	ci left: 5.711362e-04	ci right 6.577119e-04	k: 785	n:1280000
Cons ci ratio: 4.302618e-01	ci left: 5.095112e-05	ci right 7.951784e-05	k: 82	n:1280000
KS ci ratio: 3.993583e-03	ci left: 4.286016e-01	ci right 4.303175e-01	k: 549708	n:1280000
GABBR2   1280000 perm   910 sec   (1407 perm/sec)   p_kst 4.294594e-01   p_cons 6.406250e-05   p_joint 6.132813e-04

Joint ci ratio: 1.396902e-01	ci left: 5.674568e-04	ci right 6.534157e-04	k: 786	n:1290000
Cons ci ratio: 4.276930e-01	ci left: 5.124763e-05	ci right 7.975984e-05	k: 83	n:1290000
KS ci ratio: 3.978266e-03	ci left: 4.285812e-01	ci right 4.302904e-01	k: 553972	n:1290000
GABBR2   1290000 perm   922 sec   (1399 perm/sec)   p_kst 4.294357e-01   p_cons 6.434109e-05   p_joint 6.093023e-04

Joint ci ratio: 1.398685e-01	ci left: 5.616070e-04	ci right 6.467973e-04	k: 784	n:1300000
Cons ci ratio: 4.251696e-01	ci left: 5.154008e-05	ci right 7.999763e-05	k: 84	n:1300000
KS ci ratio: 3.962590e-03	ci left: 4.286273e-01	ci right 4.303299e-01	k: 558322	n:1300000
GABBR2   1300000 perm   934 sec   (1392 perm/sec)   p_kst 4.294785e-01   p_cons 6.461538e-05   p_joint 6.030769e-04

Joint ci ratio: 1.396022e-01	ci left: 5.595299e-04	ci right 6.442301e-04	k: 787	n:1310000
Cons ci ratio: 4.251697e-01	ci left: 5.114664e-05	ci right 7.938696e-05	k: 84	n:1310000
KS ci ratio: 3.946900e-03	ci left: 4.286971e-01	ci right 4.303932e-01	k: 562704	n:1310000
GABBR2   1310000 perm   946 sec   (1384 perm/sec)   p_kst 4.295450e-01   p_cons 6.412214e-05   p_joint 6.007634e-04

Joint ci ratio: 1.390737e-01	ci left: 5.596780e-04	ci right 6.440534e-04	k: 793	n:1320000
Cons ci ratio: 4.226905e-01	ci left: 5.143591e-05	ci right 7.962350e-05	k: 85	n:1320000
KS ci ratio: 3.931815e-03	ci left: 4.287137e-01	ci right 4.304033e-01	k: 567017	n:1320000
GABBR2   1320000 perm   958 sec   (1377 perm/sec)   p_kst 4.295583e-01   p_cons 6.439394e-05   p_joint 6.007576e-04

Joint ci ratio: 1.386379e-01	ci left: 5.590987e-04	ci right 6.431008e-04	k: 798	n:1330000
Cons ci ratio: 4.202542e-01	ci left: 5.172129e-05	ci right 7.985601e-05	k: 86	n:1330000
KS ci ratio: 3.917105e-03	ci left: 4.287044e-01	ci right 4.303877e-01	k: 571296	n:1330000
GABBR2   1330000 perm   971 sec   (1370 perm/sec)   p_kst 4.295459e-01   p_cons 6.466165e-05   p_joint 6.000000e-04

Joint ci ratio: 1.376931e-01	ci left: 5.628516e-04	ci right 6.467940e-04	k: 809	n:1340000
Cons ci ratio: 4.155052e-01	ci left: 5.267090e-05	ci right 8.090868e-05	k: 88	n:1340000
KS ci ratio: 3.902827e-03	ci left: 4.286617e-01	ci right 4.303386e-01	k: 575530	n:1340000
GABBR2   1340000 perm   983 sec   (1363 perm/sec)   p_kst 4.295000e-01   p_cons 6.567164e-05   p_joint 6.037313e-04

Joint ci ratio: 1.372701e-01	ci left: 5.622586e-04	ci right 6.458339e-04	k: 814	n:1350000
Cons ci ratio: 4.131904e-01	ci left: 5.294426e-05	ci right 8.112691e-05	k: 89	n:1350000
KS ci ratio: 3.888058e-03	ci left: 4.287011e-01	ci right 4.303718e-01	k: 579874	n:1350000
GABBR2   1350000 perm   996 sec   (1356 perm/sec)   p_kst 4.295363e-01   p_cons 6.592593e-05   p_joint 6.029630e-04

Joint ci ratio: 1.365182e-01	ci left: 5.645154e-04	ci right 6.479292e-04	k: 823	n:1360000
Cons ci ratio: 4.131905e-01	ci left: 5.255496e-05	ci right 8.053039e-05	k: 89	n:1360000
KS ci ratio: 3.874088e-03	ci left: 4.286598e-01	ci right 4.303244e-01	k: 584109	n:1360000
GABBR2   1360000 perm   1008 sec   (1349 perm/sec)   p_kst 4.294919e-01   p_cons 6.544118e-05   p_joint 6.051471e-04

Joint ci ratio: 1.358602e-01	ci left: 5.660354e-04	ci right 6.492381e-04	k: 831	n:1370000
Cons ci ratio: 4.131906e-01	ci left: 5.217134e-05	ci right 7.994258e-05	k: 89	n:1370000
KS ci ratio: 3.859813e-03	ci left: 4.286767e-01	ci right 4.303352e-01	k: 588423	n:1370000
GABBR2   1370000 perm   1021 sec   (1341 perm/sec)   p_kst 4.295058e-01   p_cons 6.496350e-05   p_joint 6.065693e-04

Joint ci ratio: 1.352116e-01	ci left: 5.675342e-04	ci right 6.505269e-04	k: 839	n:1380000
Cons ci ratio: 4.131907e-01	ci left: 5.179329e-05	ci right 7.936329e-05	k: 89	n:1380000
KS ci ratio: 3.845542e-03	ci left: 4.287130e-01	ci right 4.303655e-01	k: 592764	n:1380000
GABBR2   1380000 perm   1034 sec   (1334 perm/sec)   p_kst 4.295391e-01   p_cons 6.449275e-05   p_joint 6.079710e-04

Joint ci ratio: 1.344137e-01	ci left: 5.704029e-04	ci right 6.532836e-04	k: 849	n:1390000
Cons ci ratio: 4.131908e-01	ci left: 5.142067e-05	ci right 7.879234e-05	k: 89	n:1390000
KS ci ratio: 3.831382e-03	ci left: 4.287546e-01	ci right 4.304011e-01	k: 597113	n:1390000
GABBR2   1390000 perm   1046 sec   (1328 perm/sec)   p_kst 4.295777e-01   p_cons 6.402878e-05   p_joint 6.107914e-04

Joint ci ratio: 1.120425e-01	ci left: 8.246177e-04	ci right 9.231803e-04	k: 1222	n:1400000
Cons ci ratio: 4.109142e-01	ci left: 5.169361e-05	ci right 7.901747e-05	k: 90	n:1400000
KS ci ratio: 3.817273e-03	ci left: 4.288091e-01	ci right 4.304498e-01	k: 601481	n:1400000
GABBR2   1400000 perm   1059 sec   (1322 perm/sec)   p_kst 4.296293e-01   p_cons 6.428571e-05   p_joint 8.728571e-04

Joint ci ratio: 1.090918e-01	ci left: 8.649742e-04	ci right 9.654628e-04	k: 1289	n:1410000
Cons ci ratio: 4.086748e-01	ci left: 5.196309e-05	ci right 7.923902e-05	k: 91	n:1410000
KS ci ratio: 3.645719e-03	ci left: 4.497118e-01	ci right 4.513550e-01	k: 635252	n:1410000
GABBR2   1410000 perm   1072 sec   (1315 perm/sec)   p_kst 4.505333e-01   p_cons 6.453901e-05   p_joint 9.141844e-04

Joint ci ratio: 1.088391e-01	ci left: 8.629930e-04	ci right 9.630043e-04	k: 1295	n:1420000
Cons ci ratio: 4.064716e-01	ci left: 5.222917e-05	ci right 7.945705e-05	k: 92	n:1420000
KS ci ratio: 3.633114e-03	ci left: 4.496800e-01	ci right 4.513174e-01	k: 639708	n:1420000
GABBR2   1420000 perm   1085 sec   (1308 perm/sec)   p_kst 4.504986e-01   p_cons 6.478873e-05   p_joint 9.119718e-04

Joint ci ratio: 1.086718e-01	ci left: 8.596791e-04	ci right 9.591434e-04	k: 1299	n:1430000
Cons ci ratio: 4.021700e-01	ci left: 5.312029e-05	ci right 8.044150e-05	k: 94	n:1430000
KS ci ratio: 3.620757e-03	ci left: 4.496325e-01	ci right 4.512642e-01	k: 644141	n:1430000
GABBR2   1430000 perm   1099 sec   (1302 perm/sec)   p_kst 4.504483e-01   p_cons 6.573427e-05   p_joint 9.083916e-04

Joint ci ratio: 1.103413e-01	ci left: 8.273667e-04	ci right 9.246587e-04	k: 1260	n:1440000
Cons ci ratio: 4.021701e-01	ci left: 5.275140e-05	ci right 7.988288e-05	k: 94	n:1440000
KS ci ratio: 3.608049e-03	ci left: 4.496510e-01	ci right 4.512770e-01	k: 648668	n:1440000
GABBR2   1440000 perm   1111 sec   (1296 perm/sec)   p_kst 4.504639e-01   p_cons 6.527778e-05   p_joint 8.750000e-04

Joint ci ratio: 1.100798e-01	ci left: 8.256846e-04	ci right 9.225338e-04	k: 1266	n:1450000
Cons ci ratio: 4.021702e-01	ci left: 5.238760e-05	ci right 7.933197e-05	k: 94	n:1450000
KS ci ratio: 3.595264e-03	ci left: 4.496982e-01	ci right 4.513186e-01	k: 653237	n:1450000
GABBR2   1450000 perm   1124 sec   (1290 perm/sec)   p_kst 4.505083e-01   p_cons 6.482759e-05   p_joint 8.731034e-04

Joint ci ratio: 1.096909e-01	ci left: 8.260242e-04	ci right 9.225488e-04	k: 1275	n:1460000
Cons ci ratio: 3.939613e-01	ci left: 5.449425e-05	ci right 8.180119e-05	k: 98	n:1460000
KS ci ratio: 3.582861e-03	ci left: 4.497105e-01	ci right 4.513253e-01	k: 657756	n:1460000
GABBR2   1460000 perm   1137 sec   (1284 perm/sec)   p_kst 4.505178e-01   p_cons 6.712329e-05   p_joint 8.732877e-04

Joint ci ratio: 1.095624e-01	ci left: 8.223897e-04	ci right 9.183698e-04	k: 1278	n:1470000
Cons ci ratio: 3.919865e-01	ci left: 5.473660e-05	ci right 8.199188e-05	k: 99	n:1470000
KS ci ratio: 3.570988e-03	ci left: 4.496669e-01	ci right 4.512762e-01	k: 662193	n:1470000
GABBR2   1470000 perm   1151 sec   (1277 perm/sec)   p_kst 4.504714e-01   p_cons 6.734694e-05   p_joint 8.693878e-04

Joint ci ratio: 1.091366e-01	ci left: 8.234050e-04	ci right 9.191061e-04	k: 1288	n:1480000
Cons ci ratio: 3.881243e-01	ci left: 5.558558e-05	ci right 8.292112e-05	k: 101	n:1480000
KS ci ratio: 3.558805e-03	ci left: 4.496833e-01	ci right 4.512871e-01	k: 666718	n:1480000
GABBR2   1480000 perm   1164 sec   (1271 perm/sec)   p_kst 4.504851e-01   p_cons 6.824324e-05   p_joint 8.702703e-04

Joint ci ratio: 1.089678e-01	ci left: 8.204901e-04	ci right 9.156954e-04	k: 1292	n:1490000
Cons ci ratio: 3.843741e-01	ci left: 5.642446e-05	ci right 8.383660e-05	k: 103	n:1490000
KS ci ratio: 3.546707e-03	ci left: 4.497049e-01	ci right 4.513033e-01	k: 671251	n:1490000
GABBR2   1490000 perm   1178 sec   (1265 perm/sec)   p_kst 4.505040e-01   p_cons 6.912752e-05   p_joint 8.671141e-04

Joint ci ratio: 1.085905e-01	ci left: 8.208569e-04	ci right 9.157539e-04	k: 1301	n:1500000
Cons ci ratio: 3.825393e-01	ci left: 5.665070e-05	ci right 8.400832e-05	k: 104	n:1500000
KS ci ratio: 3.534761e-03	ci left: 4.497222e-01	ci right 4.513153e-01	k: 675778	n:1500000
GABBR2   1500000 perm   1192 sec   (1259 perm/sec)   p_kst 4.505187e-01   p_cons 6.933333e-05   p_joint 8.673333e-04

Joint ci ratio: 1.015370e-01	ci left: 9.360140e-04	ci right 1.036777e-03	k: 1488	n:1510000
Cons ci ratio: 3.807306e-01	ci left: 5.687425e-05	ci right 8.417746e-05	k: 105	n:1510000
KS ci ratio: 3.523188e-03	ci left: 4.497035e-01	ci right 4.512914e-01	k: 680251	n:1510000
GABBR2   1510000 perm   1206 sec   (1252 perm/sec)   p_kst 4.504974e-01   p_cons 6.953642e-05   p_joint 9.854305e-04

Joint ci ratio: 1.024015e-01	ci left: 9.138276e-04	ci right 1.013090e-03	k: 1463	n:1520000
Cons ci ratio: 3.807307e-01	ci left: 5.650007e-05	ci right 8.362367e-05	k: 105	n:1520000
KS ci ratio: 3.511193e-03	ci left: 4.497608e-01	ci right 4.513434e-01	k: 684839	n:1520000
GABBR2   1520000 perm   1219 sec   (1247 perm/sec)   p_kst 4.505520e-01   p_cons 6.907895e-05   p_joint 9.625000e-04

Joint ci ratio: 1.021229e-01	ci left: 9.129499e-04	ci right 1.011831e-03	k: 1471	n:1530000
Cons ci ratio: 3.807307e-01	ci left: 5.613079e-05	ci right 8.307711e-05	k: 105	n:1530000
KS ci ratio: 3.499762e-03	ci left: 4.497545e-01	ci right 4.513319e-01	k: 689331	n:1530000
GABBR2   1530000 perm   1234 sec   (1240 perm/sec)   p_kst 4.505431e-01   p_cons 6.862745e-05   p_joint 9.614379e-04

Joint ci ratio: 1.023671e-01	ci left: 9.025922e-04	ci right 1.000599e-03	k: 1464	n:1540000
Cons ci ratio: 3.789474e-01	ci left: 5.635365e-05	ci right 8.324872e-05	k: 106	n:1540000
KS ci ratio: 3.487939e-03	ci left: 4.498198e-01	ci right 4.513921e-01	k: 693933	n:1540000
GABBR2   1540000 perm   1248 sec   (1234 perm/sec)   p_kst 4.506058e-01   p_cons 6.883117e-05   p_joint 9.506494e-04

Joint ci ratio: 1.020888e-01	ci left: 9.017983e-04	ci right 9.994367e-04	k: 1472	n:1550000
Cons ci ratio: 3.789475e-01	ci left: 5.599008e-05	ci right 8.271163e-05	k: 106	n:1550000
KS ci ratio: 3.476860e-03	ci left: 4.497952e-01	ci right 4.513624e-01	k: 698397	n:1550000
GABBR2   1550000 perm   1262 sec   (1228 perm/sec)   p_kst 4.505787e-01   p_cons 6.838710e-05   p_joint 9.496774e-04

Joint ci ratio: 1.019852e-01	ci left: 8.978915e-04	ci right 9.950023e-04	k: 1475	n:1560000
Cons ci ratio: 3.789476e-01	ci left: 5.563117e-05	ci right 8.218143e-05	k: 106	n:1560000
KS ci ratio: 3.465773e-03	ci left: 4.497870e-01	ci right 4.513491e-01	k: 702886	n:1560000
GABBR2   1560000 perm   1277 sec   (1222 perm/sec)   p_kst 4.505679e-01   p_cons 6.794872e-05   p_joint 9.455128e-04

Joint ci ratio: 1.016072e-01	ci left: 8.990004e-04	ci right 9.958493e-04	k: 1486	n:1570000
Cons ci ratio: 3.754548e-01	ci left: 5.642994e-05	ci right 8.305209e-05	k: 108	n:1570000
KS ci ratio: 3.454441e-03	ci left: 4.498291e-01	ci right 4.513863e-01	k: 707454	n:1570000
GABBR2   1570000 perm   1291 sec   (1216 perm/sec)   p_kst 4.506076e-01   p_cons 6.878981e-05   p_joint 9.464968e-04

Joint ci ratio: 1.010648e-01	ci left: 9.031806e-04	ci right 9.999295e-04	k: 1502	n:1580000
Cons ci ratio: 3.754548e-01	ci left: 5.607279e-05	ci right 8.252645e-05	k: 108	n:1580000
KS ci ratio: 3.443479e-03	ci left: 4.498334e-01	ci right 4.513857e-01	k: 711963	n:1580000
GABBR2   1580000 perm   1305 sec   (1211 perm/sec)   p_kst 4.506095e-01   p_cons 6.835443e-05   p_joint 9.506329e-04

Joint ci ratio: 1.008303e-01	ci left: 9.017915e-04	ci right 9.981543e-04	k: 1509	n:1590000
Cons ci ratio: 3.720568e-01	ci left: 5.685984e-05	ci right 8.338290e-05	k: 110	n:1590000
KS ci ratio: 3.432159e-03	ci left: 4.499044e-01	ci right 4.514518e-01	k: 716578	n:1590000
GABBR2   1590000 perm   1319 sec   (1205 perm/sec)   p_kst 4.506780e-01   p_cons 6.918239e-05   p_joint 9.490566e-04

Joint ci ratio: 1.006639e-01	ci left: 8.992015e-04	ci right 9.951196e-04	k: 1514	n:1600000
Cons ci ratio: 3.703921e-01	ci left: 5.707116e-05	ci right 8.354480e-05	k: 111	n:1600000
KS ci ratio: 3.421619e-03	ci left: 4.498776e-01	ci right 4.514201e-01	k: 721038	n:1600000
GABBR2   1600000 perm   1333 sec   (1200 perm/sec)   p_kst 4.506487e-01   p_cons 6.937500e-05   p_joint 9.462500e-04

Joint ci ratio: 1.002019e-01	ci left: 9.020937e-04	ci right 9.978527e-04	k: 1528	n:1610000
Cons ci ratio: 3.703922e-01	ci left: 5.671668e-05	ci right 8.302590e-05	k: 111	n:1610000
KS ci ratio: 3.410845e-03	ci left: 4.498989e-01	ci right 4.514367e-01	k: 725575	n:1610000
GABBR2   1610000 perm   1347 sec   (1195 perm/sec)   p_kst 4.506677e-01   p_cons 6.894410e-05   p_joint 9.490683e-04

Joint ci ratio: 1.000060e-01	ci left: 9.001362e-04	ci right 9.954896e-04	k: 1534	n:1620000
Cons ci ratio: 3.703923e-01	ci left: 5.636658e-05	ci right 8.251339e-05	k: 111	n:1620000
KS ci ratio: 3.400572e-03	ci left: 4.498620e-01	ci right 4.513950e-01	k: 730018	n:1620000
GABBR2   1620000 perm   1362 sec   (1190 perm/sec)   p_kst 4.506284e-01   p_cons 6.851852e-05   p_joint 9.469136e-04

Joint ci ratio: 1.002025e-01	ci left: 8.910248e-04	ci right 9.856094e-04	k: 1528	n:1630000
Cons ci ratio: 3.687497e-01	ci left: 5.657729e-05	ci right 8.267740e-05	k: 112	n:1630000
KS ci ratio: 3.389995e-03	ci left: 4.498832e-01	ci right 4.514115e-01	k: 734555	n:1630000
GABBR2   1630000 perm   1376 sec   (1184 perm/sec)   p_kst 4.506472e-01   p_cons 6.871166e-05   p_joint 9.374233e-04

Joint ci ratio: 9.469068e-02	ci left: 9.944623e-04	ci right 1.093899e-03	k: 1711	n:1640000
Cons ci ratio: 3.655290e-01	ci left: 5.733932e-05	ci right 8.350480e-05	k: 114	n:1640000
KS ci ratio: 3.379796e-03	ci left: 4.498633e-01	ci right 4.513869e-01	k: 739025	n:1640000
GABBR2   1640000 perm   1391 sec   (1179 perm/sec)   p_kst 4.506250e-01   p_cons 6.951220e-05   p_joint 1.043293e-03

Joint ci ratio: 9.425112e-02	ci left: 9.979032e-04	ci right 1.097195e-03	k: 1727	n:1650000
Cons ci ratio: 3.623912e-01	ci left: 5.809309e-05	ci right 8.432120e-05	k: 116	n:1650000
KS ci ratio: 3.369424e-03	ci left: 4.498824e-01	ci right 4.514014e-01	k: 743559	n:1650000
GABBR2   1650000 perm   1406 sec   (1174 perm/sec)   p_kst 4.506418e-01   p_cons 7.030303e-05   p_joint 1.046667e-03

Joint ci ratio: 9.381763e-02	ci left: 1.001304e-03	ci right 1.100450e-03	k: 1743	n:1660000
Cons ci ratio: 3.608523e-01	ci left: 5.829081e-05	ci right 8.447015e-05	k: 117	n:1660000
KS ci ratio: 3.359045e-03	ci left: 4.499164e-01	ci right 4.514308e-01	k: 748118	n:1660000
GABBR2   1660000 perm   1420 sec   (1169 perm/sec)   p_kst 4.506735e-01   p_cons 7.048193e-05   p_joint 1.050000e-03

Joint ci ratio: 9.387182e-02	ci left: 9.941382e-04	ci right 1.092635e-03	k: 1741	n:1670000
Cons ci ratio: 3.593329e-01	ci left: 5.848640e-05	ci right 8.461709e-05	k: 118	n:1670000
KS ci ratio: 3.349126e-03	ci left: 4.498961e-01	ci right 4.514059e-01	k: 752587	n:1670000
GABBR2   1670000 perm   1435 sec   (1164 perm/sec)   p_kst 4.506509e-01   p_cons 7.065868e-05   p_joint 1.042515e-03

Joint ci ratio: 9.363030e-02	ci left: 9.934523e-04	ci right 1.091614e-03	k: 1750	n:1680000
Cons ci ratio: 3.593330e-01	ci left: 5.813826e-05	ci right 8.411342e-05	k: 118	n:1680000
KS ci ratio: 3.338909e-03	ci left: 4.499331e-01	ci right 4.514385e-01	k: 757152	n:1680000
GABBR2   1680000 perm   1450 sec   (1159 perm/sec)   p_kst 4.506857e-01   p_cons 7.023810e-05   p_joint 1.041667e-03

Joint ci ratio: 9.400755e-02	ci left: 9.794839e-04	ci right 1.076677e-03	k: 1736	n:1690000
Cons ci ratio: 3.593331e-01	ci left: 5.779425e-05	ci right 8.361571e-05	k: 118	n:1690000
KS ci ratio: 3.328995e-03	ci left: 4.499384e-01	ci right 4.514393e-01	k: 761664	n:1690000
GABBR2   1690000 perm   1465 sec   (1153 perm/sec)   p_kst 4.506888e-01   p_cons 6.982249e-05   p_joint 1.027219e-03

Joint ci ratio: 9.381879e-02	ci left: 9.777431e-04	ci right 1.074558e-03	k: 1743	n:1700000
Cons ci ratio: 3.578327e-01	ci left: 5.798953e-05	ci right 8.376486e-05	k: 119	n:1700000
KS ci ratio: 3.319173e-03	ci left: 4.499430e-01	ci right 4.514395e-01	k: 766175	n:1700000
GABBR2   1700000 perm   1480 sec   (1148 perm/sec)   p_kst 4.506912e-01   p_cons 7.000000e-05   p_joint 1.025294e-03

Joint ci ratio: 9.357768e-02	ci left: 9.771651e-04	ci right 1.073660e-03	k: 1752	n:1710000
Cons ci ratio: 3.548874e-01	ci left: 5.871530e-05	ci right 8.454887e-05	k: 121	n:1710000
KS ci ratio: 3.309270e-03	ci left: 4.499727e-01	ci right 4.514649e-01	k: 770729	n:1710000
GABBR2   1710000 perm   1496 sec   (1143 perm/sec)   p_kst 4.507187e-01   p_cons 7.076023e-05   p_joint 1.024561e-03

Joint ci ratio: 9.331191e-02	ci left: 9.771620e-04	ci right 1.073368e-03	k: 1762	n:1720000
Cons ci ratio: 3.534418e-01	ci left: 5.890361e-05	ci right 8.469021e-05	k: 122	n:1720000
KS ci ratio: 3.299788e-03	ci left: 4.499521e-01	ci right 4.514399e-01	k: 775197	n:1720000
GABBR2   1720000 perm   1511 sec   (1138 perm/sec)   p_kst 4.506959e-01   p_cons 7.093023e-05   p_joint 1.024419e-03

Joint ci ratio: 9.315365e-02	ci left: 9.749010e-04	ci right 1.070713e-03	k: 1768	n:1730000
Cons ci ratio: 3.534418e-01	ci left: 5.856312e-05	ci right 8.420068e-05	k: 122	n:1730000
KS ci ratio: 3.289891e-03	ci left: 4.500063e-01	ci right 4.514898e-01	k: 779794	n:1730000
GABBR2   1730000 perm   1527 sec   (1133 perm/sec)   p_kst 4.507480e-01   p_cons 7.052023e-05   p_joint 1.021965e-03

Joint ci ratio: 9.296997e-02	ci left: 9.732274e-04	ci right 1.068676e-03	k: 1775	n:1740000
Cons ci ratio: 3.534419e-01	ci left: 5.822655e-05	ci right 8.371677e-05	k: 122	n:1740000
KS ci ratio: 3.280864e-03	ci left: 4.499421e-01	ci right 4.514213e-01	k: 784186	n:1740000
GABBR2   1740000 perm   1543 sec   (1128 perm/sec)   p_kst 4.506816e-01   p_cons 7.011494e-05   p_joint 1.020115e-03

Joint ci ratio: 9.281344e-02	ci left: 9.710150e-04	ci right 1.066077e-03	k: 1781	n:1750000
Cons ci ratio: 3.534420e-01	ci left: 5.789383e-05	ci right 8.323839e-05	k: 122	n:1750000
KS ci ratio: 3.271426e-03	ci left: 4.499518e-01	ci right 4.514267e-01	k: 788706	n:1750000
GABBR2   1750000 perm   1559 sec   (1123 perm/sec)   p_kst 4.506891e-01   p_cons 6.971429e-05   p_joint 1.017714e-03

Joint ci ratio: 9.250246e-02	ci left: 9.721581e-04	ci right 1.066996e-03	k: 1793	n:1760000
Cons ci ratio: 3.534420e-01	ci left: 5.756488e-05	ci right 8.276545e-05	k: 122	n:1760000
KS ci ratio: 3.261906e-03	ci left: 4.499863e-01	ci right 4.514570e-01	k: 793270	n:1760000
GABBR2   1760000 perm   1574 sec   (1118 perm/sec)   p_kst 4.507216e-01   p_cons 6.931818e-05   p_joint 1.018750e-03

Joint ci ratio: 9.234827e-02	ci left: 9.699771e-04	ci right 1.064436e-03	k: 1799	n:1770000
Cons ci ratio: 3.520140e-01	ci left: 5.775457e-05	ci right 8.291268e-05	k: 123	n:1770000
KS ci ratio: 3.252608e-03	ci left: 4.499990e-01	ci right 4.514656e-01	k: 797796	n:1770000
GABBR2   1770000 perm   1590 sec   (1113 perm/sec)   p_kst 4.507322e-01   p_cons 6.949153e-05   p_joint 1.016384e-03

Joint ci ratio: 9.299725e-02	ci left: 9.508079e-04	ci right 1.044086e-03	k: 1774	n:1780000
Cons ci ratio: 3.520140e-01	ci left: 5.743011e-05	ci right 8.244688e-05	k: 123	n:1780000
KS ci ratio: 3.243376e-03	ci left: 4.500138e-01	ci right 4.514763e-01	k: 802326	n:1780000
GABBR2   1780000 perm   1606 sec   (1108 perm/sec)   p_kst 4.507449e-01   p_cons 6.910112e-05   p_joint 9.966292e-04

Joint ci ratio: 9.276240e-02	ci left: 9.504072e-04	ci right 1.043398e-03	k: 1783	n:1790000
Cons ci ratio: 3.478313e-01	ci left: 5.863796e-05	ci right 8.380896e-05	k: 126	n:1790000
KS ci ratio: 3.234360e-03	ci left: 4.500072e-01	ci right 4.514656e-01	k: 806818	n:1790000
GABBR2   1790000 perm   1622 sec   (1104 perm/sec)   p_kst 4.507363e-01   p_cons 7.039106e-05   p_joint 9.960894e-04

Joint ci ratio: 9.260691e-02	ci left: 9.483832e-04	ci right 1.041012e-03	k: 1789	n:1800000
Cons ci ratio: 3.478314e-01	ci left: 5.831219e-05	ci right 8.334336e-05	k: 126	n:1800000
KS ci ratio: 3.225447e-03	ci left: 4.499963e-01	ci right 4.514506e-01	k: 811302	n:1800000
GABBR2   1800000 perm   1638 sec   (1099 perm/sec)   p_kst 4.507233e-01   p_cons 7.000000e-05   p_joint 9.938889e-04

Joint ci ratio: 9.242644e-02	ci left: 9.469214e-04	ci right 1.039218e-03	k: 1796	n:1810000
Cons ci ratio: 3.478315e-01	ci left: 5.799003e-05	ci right 8.288290e-05	k: 126	n:1810000
KS ci ratio: 3.216756e-03	ci left: 4.499628e-01	ci right 4.514131e-01	k: 815745	n:1810000
GABBR2   1810000 perm   1654 sec   (1094 perm/sec)   p_kst 4.506878e-01   p_cons 6.961326e-05   p_joint 9.922652e-04

Joint ci ratio: 9.211932e-02	ci left: 9.481599e-04	ci right 1.040253e-03	k: 1808	n:1820000
Cons ci ratio: 3.464700e-01	ci left: 5.817295e-05	ci right 8.302467e-05	k: 127	n:1820000
KS ci ratio: 3.207941e-03	ci left: 4.499594e-01	ci right 4.514056e-01	k: 820242	n:1820000
GABBR2   1820000 perm   1670 sec   (1090 perm/sec)   p_kst 4.506824e-01   p_cons 6.978022e-05   p_joint 9.934066e-04

Joint ci ratio: 9.276342e-02	ci left: 9.296329e-04	ci right 1.020592e-03	k: 1783	n:1830000
Cons ci ratio: 3.464701e-01	ci left: 5.785506e-05	ci right 8.257099e-05	k: 127	n:1830000
KS ci ratio: 3.199153e-03	ci left: 4.499631e-01	ci right 4.514054e-01	k: 824752	n:1830000
GABBR2   1830000 perm   1686 sec   (1085 perm/sec)   p_kst 4.506842e-01   p_cons 6.939891e-05   p_joint 9.743169e-04

Joint ci ratio: 9.331504e-02	ci left: 9.134327e-04	ci right 1.003367e-03	k: 1762	n:1840000
Cons ci ratio: 3.451246e-01	ci left: 5.803691e-05	ci right 8.271273e-05	k: 128	n:1840000
KS ci ratio: 3.190185e-03	ci left: 4.500059e-01	ci right 4.514443e-01	k: 829334	n:1840000
GABBR2   1840000 perm   1703 sec   (1080 perm/sec)   p_kst 4.507250e-01   p_cons 6.956522e-05   p_joint 9.576087e-04

Joint ci ratio: 9.310408e-02	ci left: 9.127187e-04	ci right 1.002369e-03	k: 1770	n:1850000
Cons ci ratio: 3.437946e-01	ci left: 5.821698e-05	ci right 8.285275e-05	k: 129	n:1850000
KS ci ratio: 3.181278e-03	ci left: 4.500504e-01	ci right 4.514849e-01	k: 833920	n:1850000
GABBR2   1850000 perm   1719 sec   (1076 perm/sec)   p_kst 4.507676e-01   p_cons 6.972973e-05   p_joint 9.567568e-04

Joint ci ratio: 9.313064e-02	ci left: 9.072864e-04	ci right 9.964297e-04	k: 1769	n:1860000
Cons ci ratio: 3.411800e-01	ci left: 5.888679e-05	ci right 8.357470e-05	k: 131	n:1860000
KS ci ratio: 3.172365e-03	ci left: 4.501068e-01	ci right 4.515375e-01	k: 838529	n:1860000
GABBR2   1860000 perm   1736 sec   (1071 perm/sec)   p_kst 4.508220e-01   p_cons 7.043011e-05   p_joint 9.510753e-04

Joint ci ratio: 9.289478e-02	ci left: 9.071355e-04	ci right 9.960260e-04	k: 1778	n:1870000
Cons ci ratio: 3.411801e-01	ci left: 5.857188e-05	ci right 8.312778e-05	k: 131	n:1870000
KS ci ratio: 3.163954e-03	ci left: 4.500957e-01	ci right 4.515226e-01	k: 843013	n:1870000
GABBR2   1870000 perm   1753 sec   (1067 perm/sec)   p_kst 4.508091e-01   p_cons 7.005348e-05   p_joint 9.508021e-04

Joint ci ratio: 9.331599e-02	ci left: 8.939975e-04	ci right 9.820196e-04	k: 1762	n:1880000
Cons ci ratio: 3.398950e-01	ci left: 5.874676e-05	ci right 8.326284e-05	k: 132	n:1880000
KS ci ratio: 3.155396e-03	ci left: 4.501183e-01	ci right 4.515414e-01	k: 847560	n:1880000
GABBR2   1880000 perm   1769 sec   (1063 perm/sec)   p_kst 4.508298e-01   p_cons 7.021277e-05   p_joint 9.372340e-04

Joint ci ratio: 9.297375e-02	ci left: 8.959855e-04	ci right 9.838621e-04	k: 1775	n:1890000
Cons ci ratio: 3.398951e-01	ci left: 5.843593e-05	ci right 8.282230e-05	k: 132	n:1890000
KS ci ratio: 3.146861e-03	ci left: 4.501481e-01	ci right 4.515674e-01	k: 852121	n:1890000
GABBR2   1890000 perm   1785 sec   (1059 perm/sec)   p_kst 4.508577e-01   p_cons 6.984127e-05   p_joint 9.391534e-04

Joint ci ratio: 9.273907e-02	ci left: 8.958966e-04	ci right 9.835307e-04	k: 1784	n:1900000
Cons ci ratio: 3.373678e-01	ci left: 5.909151e-05	ci right 8.352819e-05	k: 134	n:1900000
KS ci ratio: 3.138557e-03	ci left: 4.501518e-01	ci right 4.515673e-01	k: 856633	n:1900000
GABBR2   1900000 perm   1801 sec   (1055 perm/sec)   p_kst 4.508595e-01   p_cons 7.052632e-05   p_joint 9.389474e-04

Joint ci ratio: 9.250617e-02	ci left: 8.958090e-04	ci right 9.832025e-04	k: 1793	n:1910000
Cons ci ratio: 3.373679e-01	ci left: 5.878213e-05	ci right 8.309087e-05	k: 134	n:1910000
KS ci ratio: 3.130223e-03	ci left: 4.501706e-01	ci right 4.515824e-01	k: 861174	n:1910000
GABBR2   1910000 perm   1818 sec   (1050 perm/sec)   p_kst 4.508764e-01   p_cons 7.015707e-05   p_joint 9.387435e-04

Joint ci ratio: 9.217272e-02	ci left: 8.977578e-04	ci right 9.850088e-04	k: 1806	n:1920000
Cons ci ratio: 3.361252e-01	ci left: 5.895277e-05	ci right 8.322282e-05	k: 135	n:1920000
KS ci ratio: 3.122080e-03	ci left: 4.501694e-01	ci right 4.515776e-01	k: 865677	n:1920000
GABBR2   1920000 perm   1835 sec   (1046 perm/sec)   p_kst 4.508734e-01   p_cons 7.031250e-05   p_joint 9.406250e-04

Joint ci ratio: 9.196940e-02	ci left: 8.971558e-04	ci right 9.841456e-04	k: 1814	n:1930000
Cons ci ratio: 3.361253e-01	ci left: 5.864731e-05	ci right 8.279161e-05	k: 135	n:1930000
KS ci ratio: 3.114052e-03	ci left: 4.501600e-01	ci right 4.515645e-01	k: 870164	n:1930000
GABBR2   1930000 perm   1852 sec   (1042 perm/sec)   p_kst 4.508622e-01   p_cons 6.994819e-05   p_joint 9.398964e-04

Joint ci ratio: 9.171707e-02	ci left: 8.975676e-04	ci right 9.843457e-04	k: 1824	n:1940000
Cons ci ratio: 3.324781e-01	ci left: 5.976162e-05	ci right 8.404056e-05	k: 138	n:1940000
KS ci ratio: 3.106195e-03	ci left: 4.501331e-01	ci right 4.515340e-01	k: 874617	n:1940000
GABBR2   1940000 perm   1870 sec   (1038 perm/sec)   p_kst 4.508335e-01   p_cons 7.113402e-05   p_joint 9.402062e-04

Joint ci ratio: 9.141695e-02	ci left: 8.989776e-04	ci right 9.855924e-04	k: 1836	n:1950000
Cons ci ratio: 3.301115e-01	ci left: 6.039549e-05	ci right 8.472022e-05	k: 140	n:1950000
KS ci ratio: 3.098000e-03	ci left: 4.501702e-01	ci right 4.515674e-01	k: 879194	n:1950000
GABBR2   1950000 perm   1887 sec   (1033 perm/sec)   p_kst 4.508687e-01   p_cons 7.179487e-05   p_joint 9.415385e-04

Joint ci ratio: 9.116912e-02	ci left: 8.993766e-04	ci right 9.857824e-04	k: 1846	n:1960000
Cons ci ratio: 3.301116e-01	ci left: 6.008735e-05	ci right 8.428797e-05	k: 140	n:1960000
KS ci ratio: 3.089879e-03	ci left: 4.502053e-01	ci right 4.515990e-01	k: 883768	n:1960000
GABBR2   1960000 perm   1904 sec   (1029 perm/sec)   p_kst 4.509020e-01   p_cons 7.142857e-05   p_joint 9.418367e-04

Joint ci ratio: 9.099691e-02	ci left: 8.982835e-04	ci right 9.844127e-04	k: 1853	n:1970000
Cons ci ratio: 3.289472e-01	ci left: 6.024796e-05	ci right 8.440957e-05	k: 141	n:1970000
KS ci ratio: 3.082077e-03	ci left: 4.501989e-01	ci right 4.515891e-01	k: 888261	n:1970000
GABBR2   1970000 perm   1922 sec   (1025 perm/sec)   p_kst 4.508939e-01   p_cons 7.157360e-05   p_joint 9.406091e-04

Joint ci ratio: 9.070378e-02	ci left: 8.996697e-04	ci right 9.856391e-04	k: 1865	n:1980000
Cons ci ratio: 3.277949e-01	ci left: 6.040710e-05	ci right 8.452980e-05	k: 142	n:1980000
KS ci ratio: 3.074394e-03	ci left: 4.501830e-01	ci right 4.515697e-01	k: 892735	n:1980000
GABBR2   1980000 perm   1939 sec   (1021 perm/sec)   p_kst 4.508763e-01   p_cons 7.171717e-05   p_joint 9.419192e-04

Joint ci ratio: 9.055838e-02	ci left: 8.980954e-04	ci right 9.837696e-04	k: 1871	n:1990000
Cons ci ratio: 3.277950e-01	ci left: 6.010355e-05	ci right 8.410503e-05	k: 142	n:1990000
KS ci ratio: 3.066678e-03	ci left: 4.501819e-01	ci right 4.515650e-01	k: 897238	n:1990000
GABBR2   1990000 perm   1957 sec   (1017 perm/sec)   p_kst 4.508734e-01   p_cons 7.135678e-05   p_joint 9.402010e-04

Joint ci ratio: 9.031746e-02	ci left: 8.984919e-04	ci right 9.839638e-04	k: 1881	n:2000000
Cons ci ratio: 3.266548e-01	ci left: 6.026196e-05	ci right 8.422543e-05	k: 143	n:2000000
KS ci ratio: 3.058973e-03	ci left: 4.501882e-01	ci right 4.515679e-01	k: 901756	n:2000000
GABBR2   2000000 perm   1974 sec   (1013 perm/sec)   p_kst 4.508780e-01   p_cons 7.150000e-05   p_joint 9.405000e-04

Joint ci ratio: 9.099776e-02	ci left: 8.804069e-04	ci right 9.648228e-04	k: 1853	n:2010000
Cons ci ratio: 3.255265e-01	ci left: 6.041894e-05	ci right 8.434450e-05	k: 144	n:2010000
KS ci ratio: 3.051402e-03	ci left: 4.501821e-01	ci right 4.515583e-01	k: 906249	n:2010000
GABBR2   2010000 perm   1991 sec   (1010 perm/sec)   p_kst 4.508701e-01   p_cons 7.164179e-05   p_joint 9.218905e-04

Joint ci ratio: 9.060748e-02	ci left: 8.837894e-04	ci right 9.681470e-04	k: 1869	n:2020000
Cons ci ratio: 3.233043e-01	ci left: 6.102932e-05	ci right 8.499739e-05	k: 146	n:2020000
KS ci ratio: 3.043760e-03	ci left: 4.501968e-01	ci right 4.515697e-01	k: 910784	n:2020000
GABBR2   2020000 perm   2009 sec   (1006 perm/sec)   p_kst 4.508832e-01   p_cons 7.227723e-05   p_joint 9.252475e-04

Joint ci ratio: 9.024612e-02	ci left: 8.866579e-04	ci right 9.709339e-04	k: 1884	n:2030000
Cons ci ratio: 3.233044e-01	ci left: 6.072868e-05	ci right 8.457869e-05	k: 146	n:2030000
KS ci ratio: 3.036555e-03	ci left: 4.501493e-01	ci right 4.515188e-01	k: 915193	n:2030000
GABBR2   2030000 perm   2026 sec   (1002 perm/sec)   p_kst 4.508340e-01   p_cons 7.192118e-05   p_joint 9.280788e-04

Joint ci ratio: 9.005526e-02	ci left: 8.861447e-04	ci right 9.701844e-04	k: 1892	n:2040000
Cons ci ratio: 3.222102e-01	ci left: 6.088148e-05	ci right 8.469386e-05	k: 147	n:2040000
KS ci ratio: 3.029216e-03	ci left: 4.501327e-01	ci right 4.514988e-01	k: 919664	n:2040000
GABBR2   2040000 perm   2044 sec   (998 perm/sec)   p_kst 4.508157e-01   p_cons 7.205882e-05   p_joint 9.274510e-04

Joint ci ratio: 8.993665e-02	ci left: 8.842061e-04	ci right 9.679457e-04	k: 1897	n:2050000
Cons ci ratio: 3.222103e-01	ci left: 6.058449e-05	ci right 8.428072e-05	k: 147	n:2050000
KS ci ratio: 3.021473e-03	ci left: 4.501909e-01	ci right 4.515536e-01	k: 924288	n:2050000
GABBR2   2050000 perm   2062 sec   (994 perm/sec)   p_kst 4.508722e-01   p_cons 7.170732e-05   p_joint 9.253659e-04

Joint ci ratio: 8.960668e-02	ci left: 8.865575e-04	ci right 9.701956e-04	k: 1911	n:2060000
Cons ci ratio: 3.211272e-01	ci left: 6.073664e-05	ci right 8.439609e-05	k: 148	n:2060000
KS ci ratio: 3.014393e-03	ci left: 4.501495e-01	ci right 4.515089e-01	k: 928708	n:2060000
GABBR2   2060000 perm   2080 sec   (990 perm/sec)   p_kst 4.508291e-01   p_cons 7.184466e-05   p_joint 9.276699e-04

Joint ci ratio: 8.946648e-02	ci left: 8.851082e-04	ci right 9.684721e-04	k: 1917	n:2070000
Cons ci ratio: 3.211273e-01	ci left: 6.044323e-05	ci right 8.398838e-05	k: 148	n:2070000
KS ci ratio: 3.006951e-03	ci left: 4.501761e-01	ci right 4.515323e-01	k: 933268	n:2070000
GABBR2   2070000 perm   2098 sec   (987 perm/sec)   p_kst 4.508541e-01   p_cons 7.149758e-05   p_joint 9.260870e-04

Joint ci ratio: 9.127058e-02	ci left: 8.456092e-04	ci right 9.269446e-04	k: 1842	n:2080000
Cons ci ratio: 3.189934e-01	ci left: 6.103694e-05	ci right 8.462311e-05	k: 150	n:2080000
KS ci ratio: 2.999631e-03	ci left: 4.501914e-01	ci right 4.515443e-01	k: 937805	n:2080000
GABBR2   2080000 perm   2116 sec   (983 perm/sec)   p_kst 4.508678e-01   p_cons 7.211538e-05   p_joint 8.855769e-04

Joint ci ratio: 9.102394e-02	ci left: 8.462388e-04	ci right 9.274032e-04	k: 1852	n:2090000
Cons ci ratio: 3.189935e-01	ci left: 6.074490e-05	ci right 8.421822e-05	k: 150	n:2090000
KS ci ratio: 2.992495e-03	ci left: 4.501851e-01	ci right 4.515347e-01	k: 942297	n:2090000
GABBR2   2090000 perm   2134 sec   (979 perm/sec)   p_kst 4.508598e-01   p_cons 7.177033e-05   p_joint 8.861244e-04

Joint ci ratio: 9.095048e-02	ci left: 8.436052e-04	ci right 9.244481e-04	k: 1855	n:2100000
Cons ci ratio: 3.189935e-01	ci left: 6.045563e-05	ci right 8.381718e-05	k: 150	n:2100000
KS ci ratio: 2.985383e-03	ci left: 4.501830e-01	ci right 4.515295e-01	k: 946798	n:2100000
GABBR2   2100000 perm   2153 sec   (975 perm/sec)   p_kst 4.508562e-01   p_cons 7.142857e-05   p_joint 8.833333e-04

Joint ci ratio: 9.199846e-02	ci left: 8.201567e-04	ci right 8.997069e-04	k: 1813	n:2110000
Cons ci ratio: 3.158710e-01	ci left: 6.147766e-05	ci right 8.495463e-05	k: 153	n:2110000
KS ci ratio: 2.978228e-03	ci left: 4.501967e-01	ci right 4.515399e-01	k: 951332	n:2110000
GABBR2   2110000 perm   2171 sec   (972 perm/sec)   p_kst 4.508682e-01   p_cons 7.251185e-05   p_joint 8.592417e-04

Joint ci ratio: 9.172073e-02	ci left: 8.213575e-04	ci right 9.007708e-04	k: 1824	n:2120000
Cons ci ratio: 3.158711e-01	ci left: 6.118767e-05	ci right 8.455390e-05	k: 153	n:2120000
KS ci ratio: 2.971365e-03	ci left: 4.501701e-01	ci right 4.515102e-01	k: 955781	n:2120000
GABBR2   2120000 perm   2190 sec   (968 perm/sec)   p_kst 4.508401e-01   p_cons 7.216981e-05   p_joint 8.603774e-04

Joint ci ratio: 9.127153e-02	ci left: 8.257588e-04	ci right 9.051858e-04	k: 1842	n:2130000
Cons ci ratio: 3.138396e-01	ci left: 6.176519e-05	ci right 8.516985e-05	k: 155	n:2130000
KS ci ratio: 2.964593e-03	ci left: 4.501363e-01	ci right 4.514732e-01	k: 960214	n:2130000
GABBR2   2130000 perm   2208 sec   (965 perm/sec)   p_kst 4.508047e-01   p_cons 7.276995e-05   p_joint 8.647887e-04

Joint ci ratio: 9.687869e-02	ci left: 7.274430e-04	ci right 8.019560e-04	k: 1635	n:2140000
Cons ci ratio: 3.128385e-01	ci left: 6.190711e-05	ci right 8.527578e-05	k: 156	n:2140000
KS ci ratio: 2.957536e-03	ci left: 4.501584e-01	ci right 4.514922e-01	k: 964766	n:2140000
GABBR2   2140000 perm   2227 sec   (961 perm/sec)   p_kst 4.508252e-01   p_cons 7.289720e-05   p_joint 7.640187e-04

Joint ci ratio: 9.661328e-02	ci left: 7.281443e-04	ci right 8.025133e-04	k: 1644	n:2150000
Cons ci ratio: 3.108647e-01	ci left: 6.247662e-05	ci right 8.588194e-05	k: 158	n:2150000
KS ci ratio: 2.950662e-03	ci left: 4.501580e-01	ci right 4.514887e-01	k: 969270	n:2150000
GABBR2   2150000 perm   2245 sec   (957 perm/sec)   p_kst 4.508233e-01   p_cons 7.348837e-05   p_joint 7.646512e-04

Joint ci ratio: 9.649611e-02	ci left: 7.265804e-04	ci right 8.006945e-04	k: 1648	n:2160000
Cons ci ratio: 3.108647e-01	ci left: 6.218737e-05	ci right 8.548434e-05	k: 158	n:2160000
KS ci ratio: 2.944014e-03	ci left: 4.501275e-01	ci right 4.514551e-01	k: 973709	n:2160000
GABBR2   2160000 perm   2264 sec   (954 perm/sec)   p_kst 4.507912e-01   p_cons 7.314815e-05   p_joint 7.629630e-04

Joint ci ratio: 9.635020e-02	ci left: 7.254807e-04	ci right 7.993644e-04	k: 1653	n:2170000
Cons ci ratio: 3.108648e-01	ci left: 6.190079e-05	ci right 8.509040e-05	k: 158	n:2170000
KS ci ratio: 2.937105e-03	ci left: 4.501489e-01	ci right 4.514734e-01	k: 978260	n:2170000
GABBR2   2170000 perm   2283 sec   (950 perm/sec)   p_kst 4.508111e-01   p_cons 7.281106e-05   p_joint 7.617512e-04

Joint ci ratio: 9.620496e-02	ci left: 7.243911e-04	ci right 7.980464e-04	k: 1658	n:2180000
Cons ci ratio: 3.108648e-01	ci left: 6.161684e-05	ci right 8.470008e-05	k: 158	n:2180000
KS ci ratio: 2.930633e-03	ci left: 4.501045e-01	ci right 4.514259e-01	k: 982668	n:2180000
GABBR2   2180000 perm   2302 sec   (947 perm/sec)   p_kst 4.507651e-01   p_cons 7.247706e-05   p_joint 7.605505e-04

Joint ci ratio: 9.588752e-02	ci left: 7.259856e-04	ci right 7.995458e-04	k: 1669	n:2190000
Cons ci ratio: 3.108649e-01	ci left: 6.133549e-05	ci right 8.431333e-05	k: 158	n:2190000
KS ci ratio: 2.923849e-03	ci left: 4.501203e-01	ci right 4.514387e-01	k: 987207	n:2190000
GABBR2   2190000 perm   2321 sec   (943 perm/sec)   p_kst 4.507795e-01   p_cons 7.214612e-05   p_joint 7.621005e-04

Joint ci ratio: 9.577297e-02	ci left: 7.244603e-04	ci right 7.977733e-04	k: 1673	n:2200000
Cons ci ratio: 3.089279e-01	ci left: 6.189510e-05	ci right 8.490964e-05	k: 160	n:2200000
KS ci ratio: 2.917148e-03	ci left: 4.501301e-01	ci right 4.514455e-01	k: 991733	n:2200000
GABBR2   2200000 perm   2341 sec   (940 perm/sec)   p_kst 4.507877e-01   p_cons 7.272727e-05   p_joint 7.604545e-04

Joint ci ratio: 9.557337e-02	ci left: 7.242738e-04	ci right 7.974066e-04	k: 1680	n:2210000
Cons ci ratio: 3.079729e-01	ci left: 6.203250e-05	ci right 8.501283e-05	k: 161	n:2210000
KS ci ratio: 2.910453e-03	ci left: 4.501465e-01	ci right 4.514590e-01	k: 996274	n:2210000
GABBR2   2210000 perm   2360 sec   (936 perm/sec)   p_kst 4.508027e-01   p_cons 7.285068e-05   p_joint 7.601810e-04

Joint ci ratio: 9.540329e-02	ci left: 7.236494e-04	ci right 7.965819e-04	k: 1686	n:2220000
Cons ci ratio: 3.079730e-01	ci left: 6.175307e-05	ci right 8.462990e-05	k: 161	n:2220000
KS ci ratio: 2.903972e-03	ci left: 4.501341e-01	ci right 4.514436e-01	k: 1000751	n:2220000
GABBR2   2220000 perm   2379 sec   (933 perm/sec)   p_kst 4.507887e-01   p_cons 7.252252e-05   p_joint 7.594595e-04

Joint ci ratio: 9.623481e-02	ci left: 7.077112e-04	ci right 7.796941e-04	k: 1657	n:2230000
Cons ci ratio: 3.070268e-01	ci left: 6.188999e-05	ci right 8.473331e-05	k: 162	n:2230000
KS ci ratio: 2.897225e-03	ci left: 4.501746e-01	ci right 4.514812e-01	k: 1005346	n:2230000
GABBR2   2230000 perm   2399 sec   (930 perm/sec)   p_kst 4.508278e-01   p_cons 7.264574e-05   p_joint 7.430493e-04

Joint ci ratio: 9.600347e-02	ci left: 7.080374e-04	ci right 7.798706e-04	k: 1665	n:2240000
Cons ci ratio: 3.060893e-01	ci left: 6.202578e-05	ci right 8.483570e-05	k: 163	n:2240000
KS ci ratio: 2.890770e-03	ci left: 4.501728e-01	ci right 4.514764e-01	k: 1009847	n:2240000
GABBR2   2240000 perm   2418 sec   (926 perm/sec)   p_kst 4.508246e-01   p_cons 7.276786e-05   p_joint 7.433036e-04

Joint ci ratio: 9.557401e-02	ci left: 7.113976e-04	ci right 7.832308e-04	k: 1680	n:2250000
Cons ci ratio: 3.042397e-01	ci left: 6.257095e-05	ci right 8.541539e-05	k: 165	n:2250000
KS ci ratio: 2.884487e-03	ci left: 4.501488e-01	ci right 4.514495e-01	k: 1014298	n:2250000
GABBR2   2250000 perm   2438 sec   (923 perm/sec)   p_kst 4.507991e-01   p_cons 7.333333e-05   p_joint 7.466667e-04

Joint ci ratio: 9.526276e-02	ci left: 7.130010e-04	ci right 7.847485e-04	k: 1691	n:2260000
Cons ci ratio: 3.024233e-01	ci left: 6.311171e-05	ci right 8.598954e-05	k: 167	n:2260000
KS ci ratio: 2.878054e-03	ci left: 4.501578e-01	ci right 4.514556e-01	k: 1018823	n:2260000
GABBR2   2260000 perm   2458 sec   (920 perm/sec)   p_kst 4.508066e-01   p_cons 7.389381e-05   p_joint 7.482301e-04

Joint ci ratio: 9.498244e-02	ci left: 7.141605e-04	ci right 7.858015e-04	k: 1701	n:2270000
Cons ci ratio: 3.024233e-01	ci left: 6.283368e-05	ci right 8.561073e-05	k: 167	n:2270000
KS ci ratio: 2.871757e-03	ci left: 4.501508e-01	ci right 4.514458e-01	k: 1023312	n:2270000
GABBR2   2270000 perm   2477 sec   (916 perm/sec)   p_kst 4.507982e-01   p_cons 7.356828e-05   p_joint 7.493392e-04

Joint ci ratio: 9.470458e-02	ci left: 7.153102e-04	ci right 7.868449e-04	k: 1711	n:2280000
Cons ci ratio: 3.015272e-01	ci left: 6.296346e-05	ci right 8.570697e-05	k: 168	n:2280000
KS ci ratio: 2.865262e-03	ci left: 4.501851e-01	ci right 4.514773e-01	k: 1027895	n:2280000
GABBR2   2280000 perm   2497 sec   (913 perm/sec)   p_kst 4.508311e-01   p_cons 7.368421e-05   p_joint 7.504386e-04

Joint ci ratio: 9.445659e-02	ci left: 7.160237e-04	ci right 7.874320e-04	k: 1720	n:2290000
Cons ci ratio: 3.015273e-01	ci left: 6.268851e-05	ci right 8.533271e-05	k: 168	n:2290000
KS ci ratio: 2.859070e-03	ci left: 4.501742e-01	ci right 4.514635e-01	k: 1032375	n:2290000
GABBR2   2290000 perm   2517 sec   (910 perm/sec)   p_kst 4.508188e-01   p_cons 7.336245e-05   p_joint 7.510917e-04

Joint ci ratio: 9.437447e-02	ci left: 7.141841e-04	ci right 7.853435e-04	k: 1723	n:2300000
Cons ci ratio: 3.015273e-01	ci left: 6.241595e-05	ci right 8.496170e-05	k: 168	n:2300000
KS ci ratio: 2.852738e-03	ci left: 4.501946e-01	ci right 4.514812e-01	k: 1036927	n:2300000
GABBR2   2300000 perm   2537 sec   (907 perm/sec)   p_kst 4.508378e-01   p_cons 7.304348e-05   p_joint 7.491304e-04

Joint ci ratio: 9.487156e-02	ci left: 7.034844e-04	ci right 7.739674e-04	k: 1705	n:2310000
Cons ci ratio: 3.015274e-01	ci left: 6.214575e-05	ci right 8.459390e-05	k: 168	n:2310000
KS ci ratio: 2.846705e-03	ci left: 4.501703e-01	ci right 4.514541e-01	k: 1041376	n:2310000
GABBR2   2310000 perm   2557 sec   (903 perm/sec)   p_kst 4.508121e-01   p_cons 7.272727e-05   p_joint 7.380952e-04

Joint ci ratio: 9.459467e-02	ci left: 7.046604e-04	ci right 7.750438e-04	k: 1715	n:2320000
Cons ci ratio: 2.988861e-01	ci left: 6.307361e-05	ci right 8.561947e-05	k: 171	n:2320000
KS ci ratio: 2.840546e-03	ci left: 4.501747e-01	ci right 4.514556e-01	k: 1045891	n:2320000
GABBR2   2320000 perm   2577 sec   (900 perm/sec)   p_kst 4.508151e-01   p_cons 7.370690e-05   p_joint 7.392241e-04

Joint ci ratio: 9.095445e-02	ci left: 7.603293e-04	ci right 8.331953e-04	k: 1855	n:2330000
Cons ci ratio: 2.938051e-01	ci left: 6.518663e-05	ci right 8.801796e-05	k: 177	n:2330000
KS ci ratio: 2.834439e-03	ci left: 4.501768e-01	ci right 4.514550e-01	k: 1050401	n:2330000
GABBR2   2330000 perm   2597 sec   (897 perm/sec)   p_kst 4.508159e-01   p_cons 7.596567e-05   p_joint 7.961373e-04

Joint ci ratio: 9.075906e-02	ci left: 7.604212e-04	ci right 8.331311e-04	k: 1863	n:2340000
Cons ci ratio: 2.938052e-01	ci left: 6.490805e-05	ci right 8.764181e-05	k: 177	n:2340000
KS ci ratio: 2.828284e-03	ci left: 4.501944e-01	ci right 4.514699e-01	k: 1054947	n:2340000
GABBR2   2340000 perm   2618 sec   (894 perm/sec)   p_kst 4.508321e-01   p_cons 7.564103e-05   p_joint 7.961538e-04

Joint ci ratio: 9.051654e-02	ci left: 7.613443e-04	ci right 8.339376e-04	k: 1873	n:2350000
Cons ci ratio: 2.913600e-01	ci left: 6.581477e-05	ci right 8.863888e-05	k: 180	n:2350000
KS ci ratio: 2.822312e-03	ci left: 4.501867e-01	ci right 4.514594e-01	k: 1059434	n:2350000
GABBR2   2350000 perm   2639 sec   (891 perm/sec)   p_kst 4.508230e-01   p_cons 7.659574e-05   p_joint 7.970213e-04

Joint ci ratio: 9.032395e-02	ci left: 7.614314e-04	ci right 8.338704e-04	k: 1881	n:2360000
Cons ci ratio: 2.905585e-01	ci left: 6.592870e-05	ci right 8.871786e-05	k: 181	n:2360000
KS ci ratio: 2.816278e-03	ci left: 4.501964e-01	ci right 4.514664e-01	k: 1063962	n:2360000
GABBR2   2360000 perm   2659 sec   (887 perm/sec)   p_kst 4.508314e-01   p_cons 7.669492e-05   p_joint 7.970339e-04

Joint ci ratio: 9.015646e-02	ci left: 7.611055e-04	ci right 8.333722e-04	k: 1888	n:2370000
Cons ci ratio: 2.905585e-01	ci left: 6.565052e-05	ci right 8.834352e-05	k: 181	n:2370000
KS ci ratio: 2.810228e-03	ci left: 4.502157e-01	ci right 4.514831e-01	k: 1068513	n:2370000
GABBR2   2370000 perm   2680 sec   (884 perm/sec)   p_kst 4.508494e-01   p_cons 7.637131e-05   p_joint 7.966245e-04

Joint ci ratio: 9.073531e-02	ci left: 7.480514e-04	ci right 8.195588e-04	k: 1864	n:2380000
Cons ci ratio: 2.905586e-01	ci left: 6.537467e-05	ci right 8.797233e-05	k: 181	n:2380000
KS ci ratio: 2.804338e-03	ci left: 4.502135e-01	ci right 4.514782e-01	k: 1073013	n:2380000
GABBR2   2380000 perm   2701 sec   (881 perm/sec)   p_kst 4.508458e-01   p_cons 7.605042e-05   p_joint 7.831933e-04

Joint ci ratio: 9.049299e-02	ci left: 7.490108e-04	ci right 8.204086e-04	k: 1874	n:2390000
Cons ci ratio: 2.905586e-01	ci left: 6.510114e-05	ci right 8.760425e-05	k: 181	n:2390000
KS ci ratio: 2.798490e-03	ci left: 4.502104e-01	ci right 4.514725e-01	k: 1077511	n:2390000
GABBR2   2390000 perm   2722 sec   (878 perm/sec)   p_kst 4.508414e-01   p_cons 7.573222e-05   p_joint 7.841004e-04

Joint ci ratio: 9.027656e-02	ci left: 7.495552e-04	ci right 8.208249e-04	k: 1883	n:2400000
Cons ci ratio: 2.897636e-01	ci left: 6.521623e-05	ci right 8.768614e-05	k: 182	n:2400000
KS ci ratio: 2.792695e-03	ci left: 4.502045e-01	ci right 4.514639e-01	k: 1082002	n:2400000
GABBR2   2400000 perm   2742 sec   (875 perm/sec)   p_kst 4.508342e-01   p_cons 7.583333e-05   p_joint 7.845833e-04

Joint ci ratio: 9.006168e-02	ci left: 7.500952e-04	ci right 8.212376e-04	k: 1892	n:2410000
Cons ci ratio: 2.897637e-01	ci left: 6.494562e-05	ci right 8.732230e-05	k: 182	n:2410000
KS ci ratio: 2.786970e-03	ci left: 4.501924e-01	ci right 4.514492e-01	k: 1086478	n:2410000
GABBR2   2410000 perm   2765 sec   (872 perm/sec)   p_kst 4.508207e-01   p_cons 7.551867e-05   p_joint 7.850622e-04

Joint ci ratio: 8.994303e-02	ci left: 7.490153e-04	ci right 8.199567e-04	k: 1897	n:2420000
Cons ci ratio: 2.897637e-01	ci left: 6.467725e-05	ci right 8.696147e-05	k: 182	n:2420000
KS ci ratio: 2.781195e-03	ci left: 4.501957e-01	ci right 4.514499e-01	k: 1090991	n:2420000
GABBR2   2420000 perm   2786 sec   (869 perm/sec)   p_kst 4.508227e-01   p_cons 7.520661e-05   p_joint 7.838843e-04

Joint ci ratio: 8.968346e-02	ci left: 7.503580e-04	ci right 8.212108e-04	k: 1908	n:2430000
Cons ci ratio: 2.897638e-01	ci left: 6.441109e-05	ci right 8.660360e-05	k: 182	n:2430000
KS ci ratio: 2.775414e-03	ci left: 4.502063e-01	ci right 4.514580e-01	k: 1095522	n:2430000
GABBR2   2430000 perm   2807 sec   (866 perm/sec)   p_kst 4.508321e-01   p_cons 7.489712e-05   p_joint 7.851852e-04

Joint ci ratio: 8.961316e-02	ci left: 7.484847e-04	ci right 8.191023e-04	k: 1911	n:2440000
Cons ci ratio: 2.889753e-01	ci left: 6.452720e-05	ci right 8.668817e-05	k: 183	n:2440000
KS ci ratio: 2.769655e-03	ci left: 4.502194e-01	ci right 4.514684e-01	k: 1100059	n:2440000
GABBR2   2440000 perm   2828 sec   (863 perm/sec)   p_kst 4.508439e-01   p_cons 7.500000e-05   p_joint 7.831967e-04

Joint ci ratio: 8.968375e-02	ci left: 7.442325e-04	ci right 8.145071e-04	k: 1908	n:2450000
Cons ci ratio: 2.889753e-01	ci left: 6.426382e-05	ci right 8.633434e-05	k: 183	n:2450000
KS ci ratio: 2.764007e-03	ci left: 4.502188e-01	ci right 4.514654e-01	k: 1104563	n:2450000
GABBR2   2450000 perm   2849 sec   (860 perm/sec)   p_kst 4.508420e-01   p_cons 7.469388e-05   p_joint 7.787755e-04

Joint ci ratio: 8.951979e-02	ci left: 7.439889e-04	ci right 8.141054e-04	k: 1915	n:2460000
Cons ci ratio: 2.889754e-01	ci left: 6.400259e-05	ci right 8.598339e-05	k: 183	n:2460000
KS ci ratio: 2.758303e-03	ci left: 4.502346e-01	ci right 4.514786e-01	k: 1109107	n:2460000
GABBR2   2460000 perm   2870 sec   (857 perm/sec)   p_kst 4.508565e-01   p_cons 7.439024e-05   p_joint 7.784553e-04

Joint ci ratio: 8.942656e-02	ci left: 7.425600e-04	ci right 8.124651e-04	k: 1919	n:2470000
Cons ci ratio: 2.889754e-01	ci left: 6.374347e-05	ci right 8.563528e-05	k: 183	n:2470000
KS ci ratio: 2.752670e-03	ci left: 4.502437e-01	ci right 4.514852e-01	k: 1113635	n:2470000
GABBR2   2470000 perm   2891 sec   (854 perm/sec)   p_kst 4.508644e-01   p_cons 7.408907e-05   p_joint 7.769231e-04

Joint ci ratio: 8.928719e-02	ci left: 7.419311e-04	ci right 8.116625e-04	k: 1925	n:2480000
Cons ci ratio: 2.889755e-01	ci left: 6.348643e-05	ci right 8.528998e-05	k: 183	n:2480000
KS ci ratio: 2.747152e-03	ci left: 4.502382e-01	ci right 4.514772e-01	k: 1118127	n:2480000
GABBR2   2480000 perm   2913 sec   (851 perm/sec)   p_kst 4.508577e-01   p_cons 7.379032e-05   p_joint 7.762097e-04

Joint ci ratio: 8.901025e-02	ci left: 7.436633e-04	ci right 8.133294e-04	k: 1937	n:2490000
Cons ci ratio: 2.889755e-01	ci left: 6.323147e-05	ci right 8.494745e-05	k: 183	n:2490000
KS ci ratio: 2.741676e-03	ci left: 4.502312e-01	ci right 4.514677e-01	k: 1122615	n:2490000
GABBR2   2490000 perm   2934 sec   (849 perm/sec)   p_kst 4.508494e-01   p_cons 7.349398e-05   p_joint 7.779116e-04

Joint ci ratio: 8.875865e-02	ci left: 7.449909e-04	ci right 8.145739e-04	k: 1948	n:2500000
Cons ci ratio: 2.881934e-01	ci left: 6.334959e-05	ci right 8.503653e-05	k: 184	n:2500000
KS ci ratio: 2.736069e-03	ci left: 4.502539e-01	ci right 4.514879e-01	k: 1127177	n:2500000
GABBR2   2500000 perm   2955 sec   (846 perm/sec)   p_kst 4.508708e-01   p_cons 7.360000e-05   p_joint 7.792000e-04

Joint ci ratio: 8.853178e-02	ci left: 7.459186e-04	ci right 8.154009e-04	k: 1958	n:2510000
Cons ci ratio: 2.874176e-01	ci left: 6.346685e-05	ci right 8.512483e-05	k: 185	n:2510000
KS ci ratio: 2.730663e-03	ci left: 4.502460e-01	ci right 4.514776e-01	k: 1131663	n:2510000
GABBR2   2510000 perm   2977 sec   (843 perm/sec)   p_kst 4.508618e-01   p_cons 7.370518e-05   p_joint 7.800797e-04

Joint ci ratio: 8.828421e-02	ci left: 7.472272e-04	ci right 8.166267e-04	k: 1969	n:2520000
Cons ci ratio: 2.858847e-01	ci left: 6.395160e-05	ci right 8.563758e-05	k: 187	n:2520000
KS ci ratio: 2.725147e-03	ci left: 4.502641e-01	ci right 4.514932e-01	k: 1136214	n:2520000
GABBR2   2520000 perm   2999 sec   (840 perm/sec)   p_kst 4.508786e-01   p_cons 7.420635e-05   p_joint 7.813492e-04

Joint ci ratio: 8.812779e-02	ci left: 7.469795e-04	ci right 8.162268e-04	k: 1976	n:2530000
Cons ci ratio: 2.858847e-01	ci left: 6.369883e-05	ci right 8.529909e-05	k: 187	n:2530000
KS ci ratio: 2.719569e-03	ci left: 4.502994e-01	ci right 4.515260e-01	k: 1140809	n:2530000
GABBR2   2530000 perm   3021 sec   (837 perm/sec)   p_kst 4.509126e-01   p_cons 7.391304e-05   p_joint 7.810277e-04

Joint ci ratio: 8.799440e-02	ci left: 7.463488e-04	ci right 8.154275e-04	k: 1982	n:2540000
Cons ci ratio: 2.858847e-01	ci left: 6.344804e-05	ci right 8.496327e-05	k: 187	n:2540000
KS ci ratio: 2.714109e-03	ci left: 4.503190e-01	ci right 4.515433e-01	k: 1145365	n:2540000
GABBR2   2540000 perm   3043 sec   (835 perm/sec)   p_kst 4.509311e-01   p_cons 7.362205e-05   p_joint 7.803150e-04

Joint ci ratio: 8.781743e-02	ci left: 7.464902e-04	ci right 8.154359e-04	k: 1990	n:2550000
Cons ci ratio: 2.851274e-01	ci left: 6.356331e-05	ci right 8.505024e-05	k: 188	n:2550000
KS ci ratio: 2.708752e-03	ci left: 4.503256e-01	ci right 4.515474e-01	k: 1149888	n:2550000
GABBR2   2550000 perm   3065 sec   (832 perm/sec)   p_kst 4.509365e-01   p_cons 7.372549e-05   p_joint 7.803922e-04

Joint ci ratio: 8.755391e-02	ci left: 7.481590e-04	ci right 8.170409e-04	k: 2002	n:2560000
Cons ci ratio: 2.828910e-01	ci left: 6.440343e-05	ci right 8.597313e-05	k: 191	n:2560000
KS ci ratio: 2.703517e-03	ci left: 4.503157e-01	ci right 4.515352e-01	k: 1154369	n:2560000
GABBR2   2560000 perm   3087 sec   (829 perm/sec)   p_kst 4.509254e-01   p_cons 7.460937e-05   p_joint 7.820312e-04

Joint ci ratio: 8.735785e-02	ci left: 7.486732e-04	ci right 8.174402e-04	k: 2011	n:2570000
Cons ci ratio: 2.814289e-01	ci left: 6.487599e-05	ci right 8.647173e-05	k: 193	n:2570000
KS ci ratio: 2.698172e-03	ci left: 4.503316e-01	ci right 4.515487e-01	k: 1158916	n:2570000
GABBR2   2570000 perm   3109 sec   (827 perm/sec)   p_kst 4.509401e-01   p_cons 7.509728e-05   p_joint 7.824903e-04

Joint ci ratio: 8.735798e-02	ci left: 7.457713e-04	ci right 8.142719e-04	k: 2011	n:2580000
Cons ci ratio: 2.814290e-01	ci left: 6.462453e-05	ci right 8.613657e-05	k: 193	n:2580000
KS ci ratio: 2.692783e-03	ci left: 4.503613e-01	ci right 4.515760e-01	k: 1163499	n:2580000
GABBR2   2580000 perm   3131 sec   (824 perm/sec)   p_kst 4.509686e-01   p_cons 7.480620e-05   p_joint 7.794574e-04

Joint ci ratio: 8.709856e-02	ci left: 7.474241e-04	ci right 8.158622e-04	k: 2023	n:2590000
Cons ci ratio: 2.807064e-01	ci left: 6.473391e-05	ci right 8.621724e-05	k: 194	n:2590000
KS ci ratio: 2.687516e-03	ci left: 4.503742e-01	ci right 4.515866e-01	k: 1168039	n:2590000
GABBR2   2590000 perm   3154 sec   (821 perm/sec)   p_kst 4.509803e-01   p_cons 7.490347e-05   p_joint 7.810811e-04

Joint ci ratio: 8.688415e-02	ci left: 7.483119e-04	ci right 8.166541e-04	k: 2033	n:2600000
Cons ci ratio: 2.785716e-01	ci left: 6.555788e-05	ci right 8.712017e-05	k: 197	n:2600000
KS ci ratio: 2.682378e-03	ci left: 4.503689e-01	ci right 4.515789e-01	k: 1172532	n:2600000
GABBR2   2600000 perm   3176 sec   (819 perm/sec)   p_kst 4.509738e-01   p_cons 7.576923e-05   p_joint 7.819231e-04

Joint ci ratio: 8.658657e-02	ci left: 7.506924e-04	ci right 8.190054e-04	k: 2047	n:2610000
Cons ci ratio: 2.785716e-01	ci left: 6.530670e-05	ci right 8.678638e-05	k: 197	n:2610000
KS ci ratio: 2.677281e-03	ci left: 4.503613e-01	ci right 4.515690e-01	k: 1177019	n:2610000
GABBR2   2610000 perm   3199 sec   (816 perm/sec)   p_kst 4.509651e-01   p_cons 7.547893e-05   p_joint 7.842912e-04

Joint ci ratio: 8.639693e-02	ci left: 7.511880e-04	ci right 8.193888e-04	k: 2056	n:2620000
Cons ci ratio: 2.785717e-01	ci left: 6.505743e-05	ci right 8.645514e-05	k: 197	n:2620000
KS ci ratio: 2.672117e-03	ci left: 4.503718e-01	ci right 4.515772e-01	k: 1181553	n:2620000
GABBR2   2620000 perm   3222 sec   (813 perm/sec)   p_kst 4.509744e-01   p_cons 7.519084e-05   p_joint 7.847328e-04

Joint ci ratio: 8.682049e-02	ci left: 7.408918e-04	ci right 8.085042e-04	k: 2036	n:2630000
Cons ci ratio: 2.785717e-01	ci left: 6.481006e-05	ci right 8.612641e-05	k: 197	n:2630000
KS ci ratio: 2.667140e-03	ci left: 4.503529e-01	ci right 4.515560e-01	k: 1186010	n:2630000
GABBR2   2630000 perm   3244 sec   (811 perm/sec)   p_kst 4.509544e-01   p_cons 7.490494e-05   p_joint 7.741445e-04

Joint ci ratio: 8.665050e-02	ci left: 7.410499e-04	ci right 8.085377e-04	k: 2044	n:2640000
Cons ci ratio: 2.778709e-01	ci left: 6.491694e-05	ci right 8.620532e-05	k: 198	n:2640000
KS ci ratio: 2.662042e-03	ci left: 4.503618e-01	ci right 4.515626e-01	k: 1190540	n:2640000
GABBR2   2640000 perm   3267 sec   (808 perm/sec)   p_kst 4.509621e-01   p_cons 7.500000e-05   p_joint 7.742424e-04

Joint ci ratio: 8.748953e-02	ci left: 7.238567e-04	ci right 7.904496e-04	k: 2005	n:2650000
Cons ci ratio: 2.771753e-01	ci left: 6.502307e-05	ci right 8.628357e-05	k: 199	n:2650000
KS ci ratio: 2.657152e-03	ci left: 4.503374e-01	ci right 4.515359e-01	k: 1194982	n:2650000
GABBR2   2650000 perm   3290 sec   (806 perm/sec)   p_kst 4.509366e-01   p_cons 7.509434e-05   p_joint 7.566038e-04

Joint ci ratio: 8.740249e-02	ci left: 7.226063e-04	ci right 7.890146e-04	k: 2009	n:2660000
Cons ci ratio: 2.771754e-01	ci left: 6.477862e-05	ci right 8.595920e-05	k: 199	n:2660000
KS ci ratio: 2.652028e-03	ci left: 4.503617e-01	ci right 4.515580e-01	k: 1199553	n:2660000
GABBR2   2660000 perm   3312 sec   (803 perm/sec)   p_kst 4.509598e-01   p_cons 7.481203e-05   p_joint 7.552632e-04

Joint ci ratio: 8.742438e-02	ci left: 7.195335e-04	ci right 7.856769e-04	k: 2008	n:2670000
Cons ci ratio: 2.764850e-01	ci left: 6.488454e-05	ci right 8.603772e-05	k: 200	n:2670000
KS ci ratio: 2.647179e-03	ci left: 4.503401e-01	ci right 4.515342e-01	k: 1204002	n:2670000
GABBR2   2670000 perm   3335 sec   (801 perm/sec)   p_kst 4.509371e-01   p_cons 7.490637e-05   p_joint 7.520599e-04

Joint ci ratio: 8.725083e-02	ci left: 7.197686e-04	ci right 7.857955e-04	k: 2016	n:2680000
Cons ci ratio: 2.757998e-01	ci left: 6.498973e-05	ci right 8.611558e-05	k: 201	n:2680000
KS ci ratio: 2.642156e-03	ci left: 4.503560e-01	ci right 4.515478e-01	k: 1208551	n:2680000
GABBR2   2680000 perm   3358 sec   (798 perm/sec)   p_kst 4.509519e-01   p_cons 7.500000e-05   p_joint 7.522388e-04

Joint ci ratio: 9.083695e-02	ci left: 6.603902e-04	ci right 7.235923e-04	k: 1860	n:2690000
Cons ci ratio: 2.757998e-01	ci left: 6.474813e-05	ci right 8.579545e-05	k: 201	n:2690000
KS ci ratio: 2.637287e-03	ci left: 4.503484e-01	ci right 4.515380e-01	k: 1213037	n:2690000
GABBR2   2690000 perm   3382 sec   (795 perm/sec)   p_kst 4.509431e-01   p_cons 7.472119e-05   p_joint 6.914498e-04

Joint ci ratio: 9.056960e-02	ci left: 6.619260e-04	ci right 7.250788e-04	k: 1871	n:2700000
Cons ci ratio: 2.757999e-01	ci left: 6.450833e-05	ci right 8.547770e-05	k: 201	n:2700000
KS ci ratio: 2.632431e-03	ci left: 4.503434e-01	ci right 4.515308e-01	k: 1217530	n:2700000
GABBR2   2700000 perm   3405 sec   (793 perm/sec)   p_kst 4.509370e-01   p_cons 7.444444e-05   p_joint 6.929630e-04

Joint ci ratio: 9.035263e-02	ci left: 6.627294e-04	ci right 7.257993e-04	k: 1880	n:2710000
Cons ci ratio: 2.751197e-01	ci left: 6.461381e-05	ci right 8.555670e-05	k: 202	n:2710000
KS ci ratio: 2.627512e-03	ci left: 4.503554e-01	ci right 4.515406e-01	k: 1222069	n:2710000
GABBR2   2710000 perm   3429 sec   (790 perm/sec)   p_kst 4.509480e-01   p_cons 7.453875e-05   p_joint 6.937269e-04

Joint ci ratio: 9.018498e-02	ci left: 6.628083e-04	ci right 7.257626e-04	k: 1887	n:2720000
Cons ci ratio: 2.751197e-01	ci left: 6.437626e-05	ci right 8.524216e-05	k: 202	n:2720000
KS ci ratio: 2.622743e-03	ci left: 4.503442e-01	ci right 4.515272e-01	k: 1226545	n:2720000
GABBR2   2720000 perm   3452 sec   (788 perm/sec)   p_kst 4.509357e-01   p_cons 7.426471e-05   p_joint 6.937500e-04

Joint ci ratio: 8.989965e-02	ci left: 6.646771e-04	ci right 7.275986e-04	k: 1899	n:2730000
Cons ci ratio: 2.737743e-01	ci left: 6.482264e-05	ci right 8.571280e-05	k: 204	n:2730000
KS ci ratio: 2.617939e-03	ci left: 4.503444e-01	ci right 4.515253e-01	k: 1231052	n:2730000
GABBR2   2730000 perm   3476 sec   (785 perm/sec)   p_kst 4.509348e-01   p_cons 7.472527e-05   p_joint 6.956044e-04

Joint ci ratio: 9.028096e-02	ci left: 6.565433e-04	ci right 7.189724e-04	k: 1883	n:2740000
Cons ci ratio: 2.731090e-01	ci left: 6.492600e-05	ci right 8.578990e-05	k: 205	n:2740000
KS ci ratio: 2.613074e-03	ci left: 4.503614e-01	ci right 4.515401e-01	k: 1235605	n:2740000
GABBR2   2740000 perm   3503 sec   (782 perm/sec)   p_kst 4.509507e-01   p_cons 7.481752e-05   p_joint 6.872263e-04

Joint ci ratio: 9.016143e-02	ci left: 6.559330e-04	ci right 7.182171e-04	k: 1888	n:2750000
Cons ci ratio: 2.724485e-01	ci left: 6.502868e-05	ci right 8.586639e-05	k: 206	n:2750000
KS ci ratio: 2.608304e-03	ci left: 4.503652e-01	ci right 4.515418e-01	k: 1240122	n:2750000
GABBR2   2750000 perm   3529 sec   (779 perm/sec)   p_kst 4.509535e-01   p_cons 7.490909e-05   p_joint 6.865455e-04

Joint ci ratio: 8.999484e-02	ci left: 6.560355e-04	ci right 7.182082e-04	k: 1895	n:2760000
Cons ci ratio: 2.717928e-01	ci left: 6.513067e-05	ci right 8.594225e-05	k: 207	n:2760000
KS ci ratio: 2.603530e-03	ci left: 4.503748e-01	ci right 4.515492e-01	k: 1244655	n:2760000
GABBR2   2760000 perm   3554 sec   (777 perm/sec)   p_kst 4.509620e-01   p_cons 7.500000e-05   p_joint 6.865942e-04

Joint ci ratio: 8.982916e-02	ci left: 6.561374e-04	ci right 7.181993e-04	k: 1902	n:2770000
Cons ci ratio: 2.717928e-01	ci left: 6.489554e-05	ci right 8.563199e-05	k: 207	n:2770000
KS ci ratio: 2.598700e-03	ci left: 4.503998e-01	ci right 4.515721e-01	k: 1249231	n:2770000
GABBR2   2770000 perm   3578 sec   (774 perm/sec)   p_kst 4.509859e-01   p_cons 7.472924e-05   p_joint 6.866426e-04

Joint ci ratio: 7.721402e-02	ci left: 8.904877e-04	ci right 9.623569e-04	k: 2574	n:2780000
Cons ci ratio: 2.698536e-01	ci left: 6.566798e-05	ci right 8.647619e-05	k: 210	n:2780000
KS ci ratio: 2.594095e-03	ci left: 4.503869e-01	ci right 4.515571e-01	k: 1253702	n:2780000
GABBR2   2780000 perm   3603 sec   (772 perm/sec)   p_kst 4.509719e-01   p_cons 7.553957e-05   p_joint 9.258993e-04

Joint ci ratio: 7.753123e-02	ci left: 8.799146e-04	ci right 9.512353e-04	k: 2553	n:2790000
Cons ci ratio: 2.685837e-01	ci left: 6.610108e-05	ci right 8.693135e-05	k: 212	n:2790000
KS ci ratio: 2.589608e-03	ci left: 4.503561e-01	ci right 4.515242e-01	k: 1258123	n:2790000
GABBR2   2790000 perm   3628 sec   (769 perm/sec)   p_kst 4.509401e-01   p_cons 7.598566e-05   p_joint 9.150538e-04

Joint ci ratio: 7.745551e-02	ci left: 8.785231e-04	ci right 9.496584e-04	k: 2558	n:2800000
Cons ci ratio: 2.673315e-01	ci left: 6.653131e-05	ci right 8.738303e-05	k: 214	n:2800000
KS ci ratio: 2.584919e-03	ci left: 4.503688e-01	ci right 4.515348e-01	k: 1262665	n:2800000
GABBR2   2800000 perm   3652 sec   (767 perm/sec)   p_kst 4.509518e-01   p_cons 7.642857e-05   p_joint 9.135714e-04

Joint ci ratio: 7.728954e-02	ci left: 8.792356e-04	ci right 9.502691e-04	k: 2569	n:2810000
Cons ci ratio: 2.667119e-01	ci left: 6.662659e-05	ci right 8.745170e-05	k: 215	n:2810000
KS ci ratio: 2.580285e-03	ci left: 4.503757e-01	ci right 4.515397e-01	k: 1267191	n:2810000
GABBR2   2810000 perm   3677 sec   (764 perm/sec)   p_kst 4.509577e-01   p_cons 7.651246e-05   p_joint 9.142349e-04

Joint ci ratio: 7.712464e-02	ci left: 8.799431e-04	ci right 9.508754e-04	k: 2580	n:2820000
Cons ci ratio: 2.660967e-01	ci left: 6.672126e-05	ci right 8.751982e-05	k: 216	n:2820000
KS ci ratio: 2.575833e-03	ci left: 4.503525e-01	ci right 4.515143e-01	k: 1271632	n:2820000
GABBR2   2820000 perm   3703 sec   (762 perm/sec)   p_kst 4.509333e-01   p_cons 7.659574e-05   p_joint 9.148936e-04

Joint ci ratio: 7.707994e-02	ci left: 8.778734e-04	ci right 9.485959e-04	k: 2583	n:2830000
Cons ci ratio: 2.654856e-01	ci left: 6.681531e-05	ci right 8.758741e-05	k: 217	n:2830000
KS ci ratio: 2.571241e-03	ci left: 4.503604e-01	ci right 4.515202e-01	k: 1276161	n:2830000
GABBR2   2830000 perm   3727 sec   (759 perm/sec)   p_kst 4.509403e-01   p_cons 7.667845e-05   p_joint 9.127208e-04

Joint ci ratio: 7.694606e-02	ci left: 8.778903e-04	ci right 9.484858e-04	k: 2592	n:2840000
Cons ci ratio: 2.648788e-01	ci left: 6.690875e-05	ci right 8.765447e-05	k: 218	n:2840000
KS ci ratio: 2.566689e-03	ci left: 4.503655e-01	ci right 4.515233e-01	k: 1280682	n:2840000
GABBR2   2840000 perm   3752 sec   (757 perm/sec)   p_kst 4.509444e-01   p_cons 7.676056e-05   p_joint 9.126761e-04

Joint ci ratio: 7.676859e-02	ci left: 8.789396e-04	ci right 9.494492e-04	k: 2604	n:2850000
Cons ci ratio: 2.648788e-01	ci left: 6.667398e-05	ci right 8.734691e-05	k: 218	n:2850000
KS ci ratio: 2.562102e-03	ci left: 4.503822e-01	ci right 4.515379e-01	k: 1285236	n:2850000
GABBR2   2850000 perm   3776 sec   (755 perm/sec)   p_kst 4.509600e-01   p_cons 7.649123e-05   p_joint 9.136842e-04

Joint ci ratio: 7.745625e-02	ci left: 8.600923e-04	ci right 9.297359e-04	k: 2558	n:2860000
Cons ci ratio: 2.648789e-01	ci left: 6.644086e-05	ci right 8.704150e-05	k: 218	n:2860000
KS ci ratio: 2.557562e-03	ci left: 4.503942e-01	ci right 4.515479e-01	k: 1289777	n:2860000
GABBR2   2860000 perm   3800 sec   (753 perm/sec)   p_kst 4.509710e-01   p_cons 7.622378e-05   p_joint 8.944056e-04

Joint ci ratio: 7.739585e-02	ci left: 8.584621e-04	ci right 9.279171e-04	k: 2562	n:2870000
Cons ci ratio: 2.648789e-01	ci left: 6.620935e-05	ci right 8.673823e-05	k: 218	n:2870000
KS ci ratio: 2.552974e-03	ci left: 4.504200e-01	ci right 4.515717e-01	k: 1294358	n:2870000
GABBR2   2870000 perm   3824 sec   (750 perm/sec)   p_kst 4.509958e-01   p_cons 7.595819e-05   p_joint 8.926829e-04

Joint ci ratio: 7.730546e-02	ci left: 8.575244e-04	ci right 9.268188e-04	k: 2568	n:2880000
Cons ci ratio: 2.636776e-01	ci left: 6.662790e-05	ci right 8.717739e-05	k: 220	n:2880000
KS ci ratio: 2.548447e-03	ci left: 4.504387e-01	ci right 4.515884e-01	k: 1298919	n:2880000
GABBR2   2880000 perm   3849 sec   (748 perm/sec)   p_kst 4.510135e-01   p_cons 7.638889e-05   p_joint 8.916667e-04

Joint ci ratio: 7.721538e-02	ci left: 8.565932e-04	ci right 9.257281e-04	k: 2574	n:2890000
Cons ci ratio: 2.630830e-01	ci left: 6.672054e-05	ci right 8.724455e-05	k: 221	n:2890000
KS ci ratio: 2.543924e-03	ci left: 4.504611e-01	ci right 4.516089e-01	k: 1303491	n:2890000
GABBR2   2890000 perm   3874 sec   (746 perm/sec)   p_kst 4.510349e-01   p_cons 7.647059e-05   p_joint 8.906574e-04

Joint ci ratio: 7.714057e-02	ci left: 8.553303e-04	ci right 9.242933e-04	k: 2579	n:2900000
Cons ci ratio: 2.624925e-01	ci left: 6.681258e-05	ci right 8.731120e-05	k: 222	n:2900000
KS ci ratio: 2.539567e-03	ci left: 4.504558e-01	ci right 4.516015e-01	k: 1307983	n:2900000
GABBR2   2900000 perm   3899 sec   (744 perm/sec)   p_kst 4.510286e-01   p_cons 7.655172e-05   p_joint 8.893103e-04

Joint ci ratio: 7.751751e-02	ci left: 8.439658e-04	ci right 9.123601e-04	k: 2554	n:2910000
Cons ci ratio: 2.624925e-01	ci left: 6.658298e-05	ci right 8.701116e-05	k: 222	n:2910000
KS ci ratio: 2.535186e-03	ci left: 4.504594e-01	ci right 4.516032e-01	k: 1312501	n:2910000
GABBR2   2910000 perm   3924 sec   (742 perm/sec)   p_kst 4.510313e-01   p_cons 7.628866e-05   p_joint 8.776632e-04

Joint ci ratio: 7.793084e-02	ci left: 8.320085e-04	ci right 8.998096e-04	k: 2527	n:2920000
Cons ci ratio: 2.613232e-01	ci left: 6.699493e-05	ci right 8.744297e-05	k: 224	n:2920000
KS ci ratio: 2.530938e-03	ci left: 4.504415e-01	ci right 4.515833e-01	k: 1316956	n:2920000
GABBR2   2920000 perm   3948 sec   (740 perm/sec)   p_kst 4.510123e-01   p_cons 7.671233e-05   p_joint 8.654110e-04

Joint ci ratio: 7.782320e-02	ci left: 8.315114e-04	ci right 8.991742e-04	k: 2534	n:2930000
Cons ci ratio: 2.613233e-01	ci left: 6.676628e-05	ci right 8.714454e-05	k: 224	n:2930000
KS ci ratio: 2.526695e-03	ci left: 4.504267e-01	ci right 4.515666e-01	k: 1321420	n:2930000
GABBR2   2930000 perm   3973 sec   (738 perm/sec)   p_kst 4.509966e-01   p_cons 7.645051e-05   p_joint 8.648464e-04

Joint ci ratio: 7.776193e-02	ci left: 8.300172e-04	ci right 8.975028e-04	k: 2538	n:2940000
Cons ci ratio: 2.613233e-01	ci left: 6.653918e-05	ci right 8.684813e-05	k: 224	n:2940000
KS ci ratio: 2.522391e-03	ci left: 4.504284e-01	ci right 4.515663e-01	k: 1325932	n:2940000
GABBR2   2940000 perm   3998 sec   (735 perm/sec)   p_kst 4.509973e-01   p_cons 7.619048e-05   p_joint 8.632653e-04

Joint ci ratio: 7.762447e-02	ci left: 8.301952e-04	ci right 8.975705e-04	k: 2547	n:2950000
Cons ci ratio: 2.613233e-01	ci left: 6.631362e-05	ci right 8.655373e-05	k: 224	n:2950000
KS ci ratio: 2.518062e-03	ci left: 4.504392e-01	ci right 4.515752e-01	k: 1330471	n:2950000
GABBR2   2950000 perm   4023 sec   (733 perm/sec)   p_kst 4.510071e-01   p_cons 7.593220e-05   p_joint 8.633898e-04

Joint ci ratio: 7.751808e-02	ci left: 8.297094e-04	ci right 8.969489e-04	k: 2554	n:2960000
Cons ci ratio: 2.613234e-01	ci left: 6.608959e-05	ci right 8.626132e-05	k: 224	n:2960000
KS ci ratio: 2.513781e-03	ci left: 4.504448e-01	ci right 4.515789e-01	k: 1334995	n:2960000
GABBR2   2960000 perm   4049 sec   (731 perm/sec)   p_kst 4.510118e-01   p_cons 7.567568e-05   p_joint 8.628378e-04

Joint ci ratio: 7.738191e-02	ci left: 8.298874e-04	ci right 8.970178e-04	k: 2563	n:2970000
Cons ci ratio: 2.607446e-01	ci left: 6.618173e-05	ci right 8.632956e-05	k: 225	n:2970000
KS ci ratio: 2.509582e-03	ci left: 4.504387e-01	ci right 4.515708e-01	k: 1339484	n:2970000
GABBR2   2970000 perm   4075 sec   (729 perm/sec)   p_kst 4.510047e-01   p_cons 7.575758e-05   p_joint 8.629630e-04

Joint ci ratio: 7.727652e-02	ci left: 8.294061e-04	ci right 8.964021e-04	k: 2570	n:2980000
Cons ci ratio: 2.601696e-01	ci left: 6.627331e-05	ci right 8.639729e-05	k: 226	n:2980000
KS ci ratio: 2.505237e-03	ci left: 4.504655e-01	ci right 4.515957e-01	k: 1344071	n:2980000
GABBR2   2980000 perm   4101 sec   (727 perm/sec)   p_kst 4.510305e-01   p_cons 7.583893e-05   p_joint 8.624161e-04

Joint ci ratio: 7.240819e-02	ci left: 9.438000e-04	ci right 1.015032e-03	k: 2927	n:2990000
Cons ci ratio: 2.579071e-01	ci left: 6.730261e-05	ci right 8.753279e-05	k: 230	n:2990000
KS ci ratio: 2.501001e-03	ci left: 4.504750e-01	ci right 4.516034e-01	k: 1348607	n:2990000
GABBR2   2990000 perm   4126 sec   (725 perm/sec)   p_kst 4.510391e-01   p_cons 7.692308e-05   p_joint 9.789298e-04

Joint ci ratio: 7.221109e-02	ci left: 9.458909e-04	ci right 1.017078e-03	k: 2943	n:3000000
Cons ci ratio: 2.567977e-01	ci left: 6.770193e-05	ci right 8.795059e-05	k: 232	n:3000000
KS ci ratio: 2.496806e-03	ci left: 4.504805e-01	ci right 4.516070e-01	k: 1353131	n:3000000
GABBR2   3000000 perm   4151 sec   (723 perm/sec)   p_kst 4.510437e-01   p_cons 7.733333e-05   p_joint 9.810000e-04

Joint ci ratio: 7.206434e-02	ci left: 9.466632e-04	ci right 1.017758e-03	k: 2955	n:3010000
Cons ci ratio: 2.567978e-01	ci left: 6.747701e-05	ci right 8.765839e-05	k: 232	n:3010000
KS ci ratio: 2.492758e-03	ci left: 4.504610e-01	ci right 4.515856e-01	k: 1357580	n:3010000
GABBR2   3010000 perm   4176 sec   (721 perm/sec)   p_kst 4.510233e-01   p_cons 7.707641e-05   p_joint 9.817276e-04

Joint ci ratio: 7.197920e-02	ci left: 9.458047e-04	ci right 1.016747e-03	k: 2962	n:3020000
Cons ci ratio: 2.567978e-01	ci left: 6.725357e-05	ci right 8.736813e-05	k: 232	n:3020000
KS ci ratio: 2.488626e-03	ci left: 4.504622e-01	ci right 4.515849e-01	k: 1362091	n:3020000
GABBR2   3020000 perm   4202 sec   (719 perm/sec)   p_kst 4.510235e-01   p_cons 7.682119e-05   p_joint 9.807947e-04

Joint ci ratio: 7.190648e-02	ci left: 9.446278e-04	ci right 1.015407e-03	k: 2968	n:3030000
Cons ci ratio: 2.567978e-01	ci left: 6.703161e-05	ci right 8.707979e-05	k: 232	n:3030000
KS ci ratio: 2.484323e-03	ci left: 4.505016e-01	ci right 4.516225e-01	k: 1366718	n:3030000
GABBR2   3030000 perm   4228 sec   (717 perm/sec)   p_kst 4.510620e-01   p_cons 7.656766e-05   p_joint 9.795380e-04

Joint ci ratio: 7.195513e-02	ci left: 9.402283e-04	ci right 1.010728e-03	k: 2964	n:3040000
Cons ci ratio: 2.567979e-01	ci left: 6.681111e-05	ci right 8.679335e-05	k: 232	n:3040000
KS ci ratio: 2.480284e-03	ci left: 4.504925e-01	ci right 4.516115e-01	k: 1371198	n:3040000
GABBR2   3040000 perm   4254 sec   (715 perm/sec)   p_kst 4.510520e-01   p_cons 7.631579e-05   p_joint 9.750000e-04

Joint ci ratio: 7.182201e-02	ci left: 9.406873e-04	ci right 1.011085e-03	k: 2975	n:3050000
Cons ci ratio: 2.562485e-01	ci left: 6.689885e-05	ci right 8.685768e-05	k: 233	n:3050000
KS ci ratio: 2.476295e-03	ci left: 4.504772e-01	ci right 4.515944e-01	k: 1375659	n:3050000
GABBR2   3050000 perm   4280 sec   (713 perm/sec)   p_kst 4.510357e-01   p_cons 7.639344e-05   p_joint 9.754098e-04

Joint ci ratio: 7.171366e-02	ci left: 9.405015e-04	ci right 1.010775e-03	k: 2984	n:3060000
Cons ci ratio: 2.557027e-01	ci left: 6.698606e-05	ci right 8.692155e-05	k: 234	n:3060000
KS ci ratio: 2.472198e-03	ci left: 4.504878e-01	ci right 4.516032e-01	k: 1380199	n:3060000
GABBR2   3060000 perm   4309 sec   (710 perm/sec)   p_kst 4.510454e-01   p_cons 7.647059e-05   p_joint 9.751634e-04

Joint ci ratio: 7.182224e-02	ci left: 9.345589e-04	ci right 1.004499e-03	k: 2975	n:3070000
Cons ci ratio: 2.546215e-01	ci left: 6.737767e-05	ci right 8.733145e-05	k: 236	n:3070000
KS ci ratio: 2.468152e-03	ci left: 4.504918e-01	ci right 4.516054e-01	k: 1384719	n:3070000
GABBR2   3070000 perm   4335 sec   (708 perm/sec)   p_kst 4.510485e-01   p_cons 7.687296e-05   p_joint 9.690554e-04

Joint ci ratio: 7.208956e-02	ci left: 9.245101e-04	ci right 9.939661e-04	k: 2953	n:3080000
Cons ci ratio: 2.540860e-01	ci left: 6.746289e-05	ci right 8.739324e-05	k: 237	n:3080000
KS ci ratio: 2.464127e-03	ci left: 4.504958e-01	ci right 4.516075e-01	k: 1389239	n:3080000
GABBR2   3080000 perm   4361 sec   (706 perm/sec)   p_kst 4.510516e-01   p_cons 7.694805e-05   p_joint 9.587662e-04

Joint ci ratio: 7.201650e-02	ci left: 9.234249e-04	ci right 9.927261e-04	k: 2959	n:3090000
Cons ci ratio: 2.540860e-01	ci left: 6.724457e-05	ci right 8.711041e-05	k: 237	n:3090000
KS ci ratio: 2.460112e-03	ci left: 4.505017e-01	ci right 4.516117e-01	k: 1393765	n:3090000
GABBR2   3090000 perm   4387 sec   (704 perm/sec)   p_kst 4.510566e-01   p_cons 7.669903e-05   p_joint 9.576052e-04

Joint ci ratio: 7.191940e-02	ci left: 9.229803e-04	ci right 9.921508e-04	k: 2967	n:3100000
Cons ci ratio: 2.540861e-01	ci left: 6.702765e-05	ci right 8.682941e-05	k: 237	n:3100000
KS ci ratio: 2.456121e-03	ci left: 4.505066e-01	ci right 4.516148e-01	k: 1398288	n:3100000
GABBR2   3100000 perm   4413 sec   (702 perm/sec)   p_kst 4.510606e-01   p_cons 7.645161e-05   p_joint 9.570968e-04

Joint ci ratio: 7.269591e-02	ci left: 9.001212e-04	ci right 9.683376e-04	k: 2904	n:3110000
Cons ci ratio: 2.535539e-01	ci left: 6.711322e-05	ci right 8.689217e-05	k: 238	n:3110000
KS ci ratio: 2.452265e-03	ci left: 4.504880e-01	ci right 4.515944e-01	k: 1402738	n:3110000
GABBR2   3110000 perm   4440 sec   (701 perm/sec)   p_kst 4.510412e-01   p_cons 7.652733e-05   p_joint 9.337621e-04

Joint ci ratio: 7.263348e-02	ci left: 8.988096e-04	ci right 9.668657e-04	k: 2909	n:3120000
Cons ci ratio: 2.530251e-01	ci left: 6.719828e-05	ci right 8.695449e-05	k: 239	n:3120000
KS ci ratio: 2.448292e-03	ci left: 4.504971e-01	ci right 4.516017e-01	k: 1407274	n:3120000
GABBR2   3120000 perm   4468 sec   (698 perm/sec)   p_kst 4.510494e-01   p_cons 7.660256e-05   p_joint 9.323718e-04

Joint ci ratio: 7.250900e-02	ci left: 8.990749e-04	ci right 9.670295e-04	k: 2919	n:3130000
Cons ci ratio: 2.524996e-01	ci left: 6.728284e-05	ci right 8.701636e-05	k: 240	n:3130000
KS ci ratio: 2.444336e-03	ci left: 4.505065e-01	ci right 4.516093e-01	k: 1411811	n:3130000
GABBR2   3130000 perm   4494 sec   (696 perm/sec)   p_kst 4.510578e-01   p_cons 7.667732e-05   p_joint 9.325879e-04

Joint ci ratio: 7.237279e-02	ci left: 8.996514e-04	ci right 9.675164e-04	k: 2930	n:3140000
Cons ci ratio: 2.519774e-01	ci left: 6.736690e-05	ci right 8.707780e-05	k: 241	n:3140000
KS ci ratio: 2.440399e-03	ci left: 4.505157e-01	ci right 4.516168e-01	k: 1416348	n:3140000
GABBR2   3140000 perm   4523 sec   (694 perm/sec)   p_kst 4.510662e-01   p_cons 7.675159e-05   p_joint 9.331210e-04

Joint ci ratio: 7.224963e-02	ci left: 8.999126e-04	ci right 9.676769e-04	k: 2940	n:3150000
Cons ci ratio: 2.509425e-01	ci left: 6.774795e-05	ci right 8.747621e-05	k: 243	n:3150000
KS ci ratio: 2.436559e-03	ci left: 4.505091e-01	ci right 4.516084e-01	k: 1420835	n:3150000
GABBR2   3150000 perm   4549 sec   (692 perm/sec)   p_kst 4.510587e-01   p_cons 7.714286e-05   p_joint 9.333333e-04

Joint ci ratio: 7.217609e-02	ci left: 8.989292e-04	ci right 9.665477e-04	k: 2946	n:3160000
Cons ci ratio: 2.504299e-01	ci left: 6.783014e-05	ci right 8.753568e-05	k: 244	n:3160000
KS ci ratio: 2.432748e-03	ci left: 4.505003e-01	ci right 4.515979e-01	k: 1425315	n:3160000
GABBR2   3160000 perm   4576 sec   (691 perm/sec)   p_kst 4.510491e-01   p_cons 7.721519e-05   p_joint 9.322785e-04

Joint ci ratio: 7.207833e-02	ci left: 8.985716e-04	ci right 9.660678e-04	k: 2954	n:3170000
Cons ci ratio: 2.504299e-01	ci left: 6.761616e-05	ci right 8.725955e-05	k: 244	n:3170000
KS ci ratio: 2.428830e-03	ci left: 4.505171e-01	ci right 4.516130e-01	k: 1429876	n:3170000
GABBR2   3170000 perm   4602 sec   (689 perm/sec)   p_kst 4.510650e-01   p_cons 7.697161e-05   p_joint 9.318612e-04

Joint ci ratio: 7.206624e-02	ci left: 8.960546e-04	ci right 9.633501e-04	k: 2955	n:3180000
Cons ci ratio: 2.494139e-01	ci left: 6.799307e-05	ci right 8.765338e-05	k: 246	n:3180000
KS ci ratio: 2.424974e-03	ci left: 4.505250e-01	ci right 4.516191e-01	k: 1434409	n:3180000
GABBR2   3180000 perm   4629 sec   (687 perm/sec)   p_kst 4.510720e-01   p_cons 7.735849e-05   p_joint 9.292453e-04

Joint ci ratio: 6.829642e-02	ci left: 9.964215e-04	ci right 1.067185e-03	k: 3290	n:3190000
Cons ci ratio: 2.484102e-01	ci left: 6.836778e-05	ci right 8.804459e-05	k: 248	n:3190000
KS ci ratio: 2.421146e-03	ci left: 4.505306e-01	ci right 4.516231e-01	k: 1438935	n:3190000
GABBR2   3190000 perm   4657 sec   (685 perm/sec)   p_kst 4.510768e-01   p_cons 7.774295e-05   p_joint 1.031348e-03

Joint ci ratio: 6.818256e-02	ci left: 9.966865e-04	ci right 1.067346e-03	k: 3301	n:3200000
Cons ci ratio: 2.484102e-01	ci left: 6.815413e-05	ci right 8.776946e-05	k: 248	n:3200000
KS ci ratio: 2.417224e-03	ci left: 4.505594e-01	ci right 4.516501e-01	k: 1443535	n:3200000
GABBR2   3200000 perm   4683 sec   (683 perm/sec)   p_kst 4.511047e-01   p_cons 7.750000e-05   p_joint 1.031562e-03

Joint ci ratio: 6.829664e-02	ci left: 9.902131e-04	ci right 1.060536e-03	k: 3290	n:3210000
Cons ci ratio: 2.474185e-01	ci left: 6.852617e-05	ci right 8.815771e-05	k: 250	n:3210000
KS ci ratio: 2.413546e-03	ci left: 4.505418e-01	ci right 4.516308e-01	k: 1447987	n:3210000
GABBR2   3210000 perm   4710 sec   (682 perm/sec)   p_kst 4.510863e-01   p_cons 7.788162e-05   p_joint 1.024922e-03

Joint ci ratio: 6.827598e-02	ci left: 9.877484e-04	ci right 1.057874e-03	k: 3292	n:3220000
Cons ci ratio: 2.474185e-01	ci left: 6.831335e-05	ci right 8.788393e-05	k: 250	n:3220000
KS ci ratio: 2.409650e-03	ci left: 4.505725e-01	ci right 4.516599e-01	k: 1452594	n:3220000
GABBR2   3220000 perm   4737 sec   (680 perm/sec)   p_kst 4.511161e-01   p_cons 7.763975e-05   p_joint 1.022360e-03

Joint ci ratio: 6.814158e-02	ci left: 9.886465e-04	ci right 1.058693e-03	k: 3305	n:3230000
Cons ci ratio: 2.474186e-01	ci left: 6.810185e-05	ci right 8.761185e-05	k: 250	n:3230000
KS ci ratio: 2.405988e-03	ci left: 4.505588e-01	ci right 4.516444e-01	k: 1457058	n:3230000
GABBR2   3230000 perm   4765 sec   (678 perm/sec)   p_kst 4.511015e-01   p_cons 7.739938e-05   p_joint 1.023220e-03

Joint ci ratio: 6.804903e-02	ci left: 9.883256e-04	ci right 1.058250e-03	k: 3314	n:3240000
Cons ci ratio: 2.469271e-01	ci left: 6.818119e-05	ci right 8.766916e-05	k: 251	n:3240000
KS ci ratio: 2.402224e-03	ci left: 4.505695e-01	ci right 4.516534e-01	k: 1461601	n:3240000
GABBR2   3240000 perm   4792 sec   (676 perm/sec)   p_kst 4.511114e-01   p_cons 7.746914e-05   p_joint 1.022840e-03

Joint ci ratio: 6.798758e-02	ci left: 9.870993e-04	ci right 1.056872e-03	k: 3320	n:3250000
Cons ci ratio: 2.469272e-01	ci left: 6.797140e-05	ci right 8.739941e-05	k: 251	n:3250000
KS ci ratio: 2.398485e-03	ci left: 4.505786e-01	ci right 4.516609e-01	k: 1466139	n:3250000
GABBR2   3250000 perm   4819 sec   (674 perm/sec)   p_kst 4.511197e-01   p_cons 7.723077e-05   p_joint 1.021538e-03

Joint ci ratio: 6.790586e-02	ci left: 9.864837e-04	ci right 1.056125e-03	k: 3328	n:3260000
Cons ci ratio: 2.464387e-01	ci left: 6.805069e-05	ci right 8.745698e-05	k: 252	n:3260000
KS ci ratio: 2.394736e-03	ci left: 4.505935e-01	ci right 4.516741e-01	k: 1470696	n:3260000
GABBR2   3260000 perm   4846 sec   (673 perm/sec)   p_kst 4.511337e-01   p_cons 7.730061e-05   p_joint 1.020859e-03

Joint ci ratio: 6.780410e-02	ci left: 9.864732e-04	ci right 1.056006e-03	k: 3338	n:3270000
Cons ci ratio: 2.464387e-01	ci left: 6.784258e-05	ci right 8.718953e-05	k: 252	n:3270000
KS ci ratio: 2.391057e-03	ci left: 4.505973e-01	ci right 4.516762e-01	k: 1475217	n:3270000
GABBR2   3270000 perm   4873 sec   (671 perm/sec)   p_kst 4.511367e-01   p_cons 7.706422e-05   p_joint 1.020795e-03

Joint ci ratio: 6.768257e-02	ci left: 9.870622e-04	ci right 1.056506e-03	k: 3350	n:3280000
Cons ci ratio: 2.464387e-01	ci left: 6.763574e-05	ci right 8.692371e-05	k: 252	n:3280000
KS ci ratio: 2.387378e-03	ci left: 4.506047e-01	ci right 4.516820e-01	k: 1479750	n:3280000
GABBR2   3280000 perm   4900 sec   (669 perm/sec)   p_kst 4.511433e-01   p_cons 7.682927e-05   p_joint 1.021341e-03

Joint ci ratio: 6.772315e-02	ci left: 9.828667e-04	ci right 1.052059e-03	k: 3346	n:3290000
Cons ci ratio: 2.459531e-01	ci left: 6.771536e-05	ci right 8.698217e-05	k: 253	n:3290000
KS ci ratio: 2.383682e-03	ci left: 4.506190e-01	ci right 4.516947e-01	k: 1484306	n:3290000
GABBR2   3290000 perm   4928 sec   (668 perm/sec)   p_kst 4.511568e-01   p_cons 7.689970e-05   p_joint 1.017021e-03

Joint ci ratio: 6.767267e-02	ci left: 9.813778e-04	ci right 1.050412e-03	k: 3351	n:3300000
Cons ci ratio: 2.454704e-01	ci left: 6.779454e-05	ci right 8.704024e-05	k: 254	n:3300000
KS ci ratio: 2.380062e-03	ci left: 4.506209e-01	ci right 4.516950e-01	k: 1488821	n:3300000
GABBR2   3300000 perm   4956 sec   (666 perm/sec)   p_kst 4.511579e-01   p_cons 7.696970e-05   p_joint 1.015455e-03

Joint ci ratio: 6.752171e-02	ci left: 9.828681e-04	ci right 1.051846e-03	k: 3366	n:3310000
Cons ci ratio: 2.440390e-01	ci left: 6.844048e-05	ci right 8.773910e-05	k: 257	n:3310000
KS ci ratio: 2.376487e-03	ci left: 4.506170e-01	ci right 4.516894e-01	k: 1493317	n:3310000
GABBR2   3310000 perm   4984 sec   (664 perm/sec)   p_kst 4.511532e-01   p_cons 7.764350e-05   p_joint 1.016918e-03

Joint ci ratio: 6.742167e-02	ci left: 9.828689e-04	ci right 1.051741e-03	k: 3376	n:3320000
Cons ci ratio: 2.440390e-01	ci left: 6.823434e-05	ci right 8.747482e-05	k: 257	n:3320000
KS ci ratio: 2.372971e-03	ci left: 4.506041e-01	ci right 4.516749e-01	k: 1497783	n:3320000
GABBR2   3320000 perm   5011 sec   (663 perm/sec)   p_kst 4.511395e-01   p_cons 7.740964e-05   p_joint 1.016867e-03

Joint ci ratio: 6.727238e-02	ci left: 9.843460e-04	ci right 1.053163e-03	k: 3391	n:3330000
Cons ci ratio: 2.435674e-01	ci left: 6.831138e-05	ci right 8.753075e-05	k: 258	n:3330000
KS ci ratio: 2.369531e-03	ci left: 4.505787e-01	ci right 4.516479e-01	k: 1502207	n:3330000
GABBR2   3330000 perm   5039 sec   (661 perm/sec)   p_kst 4.511132e-01   p_cons 7.747748e-05   p_joint 1.018318e-03

Joint ci ratio: 6.719321e-02	ci left: 9.837538e-04	ci right 1.052445e-03	k: 3399	n:3340000
Cons ci ratio: 2.435675e-01	ci left: 6.810686e-05	ci right 8.726868e-05	k: 258	n:3340000
KS ci ratio: 2.365971e-03	ci left: 4.505815e-01	ci right 4.516491e-01	k: 1506725	n:3340000
GABBR2   3340000 perm   5067 sec   (659 perm/sec)   p_kst 4.511153e-01   p_cons 7.724551e-05   p_joint 1.017665e-03

Joint ci ratio: 6.710446e-02	ci left: 9.834586e-04	ci right 1.052035e-03	k: 3408	n:3350000
Cons ci ratio: 2.430986e-01	ci left: 6.818386e-05	ci right 8.732485e-05	k: 259	n:3350000
KS ci ratio: 2.362501e-03	ci left: 4.505688e-01	ci right 4.516348e-01	k: 1511191	n:3350000
GABBR2   3350000 perm   5095 sec   (657 perm/sec)   p_kst 4.511018e-01   p_cons 7.731343e-05   p_joint 1.017313e-03

Joint ci ratio: 6.702589e-02	ci left: 9.828727e-04	ci right 1.051325e-03	k: 3416	n:3360000
Cons ci ratio: 2.430986e-01	ci left: 6.798093e-05	ci right 8.706495e-05	k: 259	n:3360000
KS ci ratio: 2.359085e-03	ci left: 4.505482e-01	ci right 4.516126e-01	k: 1515630	n:3360000
GABBR2   3360000 perm   5123 sec   (656 perm/sec)   p_kst 4.510804e-01   p_cons 7.708333e-05   p_joint 1.016667e-03

Joint ci ratio: 6.692803e-02	ci left: 9.828738e-04	ci right 1.051223e-03	k: 3426	n:3370000
Cons ci ratio: 2.430987e-01	ci left: 6.777921e-05	ci right 8.680660e-05	k: 259	n:3370000
KS ci ratio: 2.355745e-03	ci left: 4.505149e-01	ci right 4.515777e-01	k: 1520026	n:3370000
GABBR2   3370000 perm   5151 sec   (654 perm/sec)   p_kst 4.510463e-01   p_cons 7.685460e-05   p_joint 1.016617e-03

Joint ci ratio: 6.684033e-02	ci left: 9.825841e-04	ci right 1.050820e-03	k: 3435	n:3380000
Cons ci ratio: 2.430987e-01	ci left: 6.757868e-05	ci right 8.654978e-05	k: 259	n:3380000
KS ci ratio: 2.352207e-03	ci left: 4.505262e-01	ci right 4.515875e-01	k: 1524572	n:3380000
GABBR2   3380000 perm   5179 sec   (653 perm/sec)   p_kst 4.510568e-01   p_cons 7.662722e-05   p_joint 1.016272e-03

Joint ci ratio: 6.672390e-02	ci left: 9.831664e-04	ci right 1.051319e-03	k: 3447	n:3390000
Cons ci ratio: 2.430987e-01	ci left: 6.737933e-05	ci right 8.629447e-05	k: 259	n:3390000
KS ci ratio: 2.348682e-03	ci left: 4.505383e-01	ci right 4.515980e-01	k: 1529121	n:3390000
GABBR2   3390000 perm   5207 sec   (651 perm/sec)   p_kst 4.510681e-01   p_cons 7.640118e-05   p_joint 1.016814e-03

Joint ci ratio: 6.672400e-02	ci left: 9.802746e-04	ci right 1.048227e-03	k: 3447	n:3400000
Cons ci ratio: 2.426326e-01	ci left: 6.745738e-05	ci right 8.635264e-05	k: 260	n:3400000
KS ci ratio: 2.345223e-03	ci left: 4.505395e-01	ci right 4.515976e-01	k: 1533633	n:3400000
GABBR2   3400000 perm   5236 sec   (649 perm/sec)   p_kst 4.510685e-01   p_cons 7.647059e-05   p_joint 1.013824e-03

Joint ci ratio: 6.656966e-02	ci left: 9.820139e-04	ci right 1.049923e-03	k: 3463	n:3410000
Cons ci ratio: 2.426326e-01	ci left: 6.725955e-05	ci right 8.609941e-05	k: 260	n:3410000
KS ci ratio: 2.341811e-03	ci left: 4.505342e-01	ci right 4.515908e-01	k: 1538123	n:3410000
GABBR2   3410000 perm   5264 sec   (648 perm/sec)   p_kst 4.510625e-01   p_cons 7.624633e-05   p_joint 1.015543e-03

Joint ci ratio: 6.649295e-02	ci left: 9.814427e-04	ci right 1.049231e-03	k: 3471	n:3420000
Cons ci ratio: 2.426326e-01	ci left: 6.706289e-05	ci right 8.584766e-05	k: 260	n:3420000
KS ci ratio: 2.338481e-03	ci left: 4.505146e-01	ci right 4.515697e-01	k: 1542564	n:3420000
GABBR2   3420000 perm   5293 sec   (646 perm/sec)   p_kst 4.510421e-01   p_cons 7.602339e-05   p_joint 1.014912e-03

Joint ci ratio: 6.640695e-02	ci left: 9.811617e-04	ci right 1.048840e-03	k: 3480	n:3430000
Cons ci ratio: 2.426326e-01	ci left: 6.686737e-05	ci right 8.559738e-05	k: 260	n:3430000
KS ci ratio: 2.335225e-03	ci left: 4.504823e-01	ci right 4.515358e-01	k: 1546961	n:3430000
GABBR2   3430000 perm   5322 sec   (645 perm/sec)   p_kst 4.510090e-01   p_cons 7.580175e-05   p_joint 1.014577e-03

Joint ci ratio: 6.632128e-02	ci left: 9.808823e-04	ci right 1.048451e-03	k: 3489	n:3440000
Cons ci ratio: 2.417083e-01	ci left: 6.721910e-05	ci right 8.596515e-05	k: 262	n:3440000
KS ci ratio: 2.331849e-03	ci left: 4.504787e-01	ci right 4.515307e-01	k: 1551456	n:3440000
GABBR2   3440000 perm   5350 sec   (643 perm/sec)   p_kst 4.510047e-01   p_cons 7.616279e-05   p_joint 1.014244e-03

Joint ci ratio: 6.626438e-02	ci left: 9.797495e-04	ci right 1.047179e-03	k: 3495	n:3450000
Cons ci ratio: 2.417083e-01	ci left: 6.702427e-05	ci right 8.571598e-05	k: 262	n:3450000
KS ci ratio: 2.328421e-03	ci left: 4.504893e-01	ci right 4.515397e-01	k: 1556000	n:3450000
GABBR2   3450000 perm   5380 sec   (641 perm/sec)   p_kst 4.510145e-01   p_cons 7.594203e-05   p_joint 1.013043e-03

Joint ci ratio: 6.635002e-02	ci left: 9.743597e-04	ci right 1.041509e-03	k: 3486	n:3460000
Cons ci ratio: 2.407944e-01	ci left: 6.737365e-05	ci right 8.608115e-05	k: 264	n:3460000
KS ci ratio: 2.325101e-03	ci left: 4.504799e-01	ci right 4.515288e-01	k: 1560475	n:3460000
GABBR2   3460000 perm   5408 sec   (640 perm/sec)   p_kst 4.510043e-01   p_cons 7.630058e-05   p_joint 1.007514e-03

Joint ci ratio: 6.629305e-02	ci left: 9.732522e-04	ci right 1.040265e-03	k: 3492	n:3470000
Cons ci ratio: 2.398908e-01	ci left: 6.772115e-05	ci right 8.644409e-05	k: 266	n:3470000
KS ci ratio: 2.321803e-03	ci left: 4.504691e-01	ci right 4.515165e-01	k: 1564945	n:3470000
GABBR2   3470000 perm   5437 sec   (638 perm/sec)   p_kst 4.509928e-01   p_cons 7.665706e-05   p_joint 1.006340e-03

Joint ci ratio: 6.616056e-02	ci left: 9.744119e-04	ci right 1.041365e-03	k: 3506	n:3480000
Cons ci ratio: 2.398909e-01	ci left: 6.752655e-05	ci right 8.619569e-05	k: 266	n:3480000
KS ci ratio: 2.318369e-03	ci left: 4.504903e-01	ci right 4.515362e-01	k: 1569526	n:3480000
GABBR2   3480000 perm   5466 sec   (637 perm/sec)   p_kst 4.510132e-01   p_cons 7.643678e-05   p_joint 1.007471e-03

Joint ci ratio: 6.611350e-02	ci left: 9.730288e-04	ci right 1.039838e-03	k: 3511	n:3490000
Cons ci ratio: 2.398909e-01	ci left: 6.733307e-05	ci right 8.594871e-05	k: 266	n:3490000
KS ci ratio: 2.315032e-03	ci left: 4.504939e-01	ci right 4.515383e-01	k: 1574046	n:3490000
GABBR2   3490000 perm   5495 sec   (635 perm/sec)   p_kst 4.510160e-01   p_cons 7.621777e-05   p_joint 1.006017e-03

Joint ci ratio: 6.689999e-02	ci left: 9.472093e-04	ci right 1.013049e-03	k: 3429	n:3500000
Cons ci ratio: 2.398909e-01	ci left: 6.714068e-05	ci right 8.570314e-05	k: 266	n:3500000
KS ci ratio: 2.311740e-03	ci left: 4.504909e-01	ci right 4.515338e-01	k: 1578543	n:3500000
GABBR2   3500000 perm   5524 sec   (634 perm/sec)   p_kst 4.510123e-01   p_cons 7.600000e-05   p_joint 9.797143e-04

Joint ci ratio: 6.677354e-02	ci left: 9.481525e-04	ci right 1.013929e-03	k: 3442	n:3510000
Cons ci ratio: 2.394429e-01	ci left: 6.721719e-05	ci right 8.576095e-05	k: 267	n:3510000
KS ci ratio: 2.308528e-03	ci left: 4.504736e-01	ci right 4.515150e-01	k: 1582990	n:3510000
GABBR2   3510000 perm   5554 sec   (632 perm/sec)   p_kst 4.509943e-01   p_cons 7.606838e-05   p_joint 9.806268e-04

Joint ci ratio: 6.669611e-02	ci left: 9.476937e-04	ci right 1.013359e-03	k: 3450	n:3520000
Cons ci ratio: 2.389975e-01	ci left: 6.729330e-05	ci right 8.581840e-05	k: 268	n:3520000
KS ci ratio: 2.305342e-03	ci left: 4.504539e-01	ci right 4.514939e-01	k: 1587428	n:3520000
GABBR2   3520000 perm   5583 sec   (630 perm/sec)   p_kst 4.509739e-01   p_cons 7.613636e-05   p_joint 9.801136e-04

Joint ci ratio: 6.654198e-02	ci left: 9.494661e-04	ci right 1.015096e-03	k: 3466	n:3530000
Cons ci ratio: 2.376757e-01	ci left: 6.790178e-05	ci right 8.647579e-05	k: 271	n:3530000
KS ci ratio: 2.302086e-03	ci left: 4.504522e-01	ci right 4.514906e-01	k: 1591929	n:3530000
GABBR2   3530000 perm   5613 sec   (629 perm/sec)   p_kst 4.509714e-01   p_cons 7.677054e-05   p_joint 9.818697e-04

Joint ci ratio: 6.943910e-02	ci left: 8.681977e-04	ci right 9.309284e-04	k: 3183	n:3540000
Cons ci ratio: 2.363757e-01	ci left: 6.850711e-05	ci right 8.712920e-05	k: 274	n:3540000
KS ci ratio: 2.298853e-03	ci left: 4.504485e-01	ci right 4.514855e-01	k: 1596423	n:3540000
GABBR2   3540000 perm   5642 sec   (627 perm/sec)   p_kst 4.509669e-01   p_cons 7.740113e-05   p_joint 8.991525e-04

Joint ci ratio: 6.416821e-02	ci left: 1.016438e-03	ci right 1.084098e-03	k: 3727	n:3550000
Cons ci ratio: 2.355208e-01	ci left: 6.884421e-05	ci right 8.748039e-05	k: 276	n:3550000
KS ci ratio: 2.295639e-03	ci left: 4.504434e-01	ci right 4.514789e-01	k: 1600912	n:3550000
GABBR2   3550000 perm   5671 sec   (626 perm/sec)   p_kst 4.509611e-01   p_cons 7.774648e-05   p_joint 1.049859e-03

Joint ci ratio: 6.409949e-02	ci left: 1.015794e-03	ci right 1.083336e-03	k: 3735	n:3560000
Cons ci ratio: 2.350968e-01	ci left: 6.891516e-05	ci right 8.753208e-05	k: 277	n:3560000
KS ci ratio: 2.292396e-03	ci left: 4.504479e-01	ci right 4.514820e-01	k: 1605435	n:3560000
GABBR2   3560000 perm   5701 sec   (624 perm/sec)   p_kst 4.509649e-01   p_cons 7.780899e-05   p_joint 1.049157e-03

Joint ci ratio: 6.402243e-02	ci left: 1.015429e-03	ci right 1.082863e-03	k: 3744	n:3570000
Cons ci ratio: 2.346751e-01	ci left: 6.898575e-05	ci right 8.758346e-05	k: 278	n:3570000
KS ci ratio: 2.289199e-03	ci left: 4.504451e-01	ci right 4.514777e-01	k: 1609932	n:3570000
GABBR2   3570000 perm   5730 sec   (623 perm/sec)   p_kst 4.509613e-01   p_cons 7.787115e-05   p_joint 1.048739e-03

Joint ci ratio: 6.388606e-02	ci left: 1.016991e-03	ci right 1.084379e-03	k: 3760	n:3580000
Cons ci ratio: 2.346751e-01	ci left: 6.879306e-05	ci right 8.733882e-05	k: 278	n:3580000
KS ci ratio: 2.286018e-03	ci left: 4.504417e-01	ci right 4.514729e-01	k: 1614427	n:3580000
GABBR2   3580000 perm   5760 sec   (622 perm/sec)   p_kst 4.509573e-01   p_cons 7.765363e-05   p_joint 1.050279e-03

Joint ci ratio: 6.382672e-02	ci left: 1.016077e-03	ci right 1.083339e-03	k: 3767	n:3590000
Cons ci ratio: 2.342556e-01	ci left: 6.886362e-05	ci right 8.739042e-05	k: 279	n:3590000
KS ci ratio: 2.282756e-03	ci left: 4.504590e-01	ci right 4.514887e-01	k: 1618996	n:3590000
GABBR2   3590000 perm   5790 sec   (620 perm/sec)   p_kst 4.509738e-01   p_cons 7.771588e-05   p_joint 1.049304e-03

Joint ci ratio: 6.379293e-02	ci left: 1.014348e-03	ci right 1.081459e-03	k: 3771	n:3600000
Cons ci ratio: 2.338384e-01	ci left: 6.893383e-05	ci right 8.744170e-05	k: 280	n:3600000
KS ci ratio: 2.279606e-03	ci left: 4.504548e-01	ci right 4.514831e-01	k: 1623488	n:3600000
GABBR2   3600000 perm   5820 sec   (619 perm/sec)   p_kst 4.509689e-01   p_cons 7.777778e-05   p_joint 1.047500e-03

Joint ci ratio: 6.373385e-02	ci left: 1.013446e-03	ci right 1.080433e-03	k: 3778	n:3610000
Cons ci ratio: 2.338385e-01	ci left: 6.874287e-05	ci right 8.719948e-05	k: 280	n:3610000
KS ci ratio: 2.276461e-03	ci left: 4.504523e-01	ci right 4.514791e-01	k: 1627986	n:3610000
GABBR2   3610000 perm   5850 sec   (617 perm/sec)   p_kst 4.509657e-01   p_cons 7.756233e-05   p_joint 1.046537e-03

Joint ci ratio: 6.731487e-02	ci left: 9.044019e-04	ci right 9.676715e-04	k: 3387	n:3620000
Cons ci ratio: 2.338385e-01	ci left: 6.855297e-05	ci right 8.695860e-05	k: 280	n:3620000
KS ci ratio: 2.273242e-03	ci left: 4.504688e-01	ci right 4.514943e-01	k: 1632553	n:3620000
GABBR2   3620000 perm   5880 sec   (616 perm/sec)   p_kst 4.509815e-01   p_cons 7.734807e-05   p_joint 9.356354e-04

Joint ci ratio: 6.717617e-02	ci left: 9.057024e-04	ci right 9.689273e-04	k: 3401	n:3630000
Cons ci ratio: 2.338385e-01	ci left: 6.836412e-05	ci right 8.671905e-05	k: 280	n:3630000
KS ci ratio: 2.270082e-03	ci left: 4.504753e-01	ci right 4.514994e-01	k: 1637084	n:3630000
GABBR2   3630000 perm   5910 sec   (614 perm/sec)   p_kst 4.509873e-01   p_cons 7.713499e-05   p_joint 9.369146e-04

Joint ci ratio: 6.709734e-02	ci left: 9.053751e-04	ci right 9.685001e-04	k: 3409	n:3640000
Cons ci ratio: 2.338385e-01	ci left: 6.817631e-05	ci right 8.648081e-05	k: 280	n:3640000
KS ci ratio: 2.266933e-03	ci left: 4.504824e-01	ci right 4.515050e-01	k: 1641617	n:3640000
GABBR2   3640000 perm   5940 sec   (613 perm/sec)   p_kst 4.509937e-01   p_cons 7.692308e-05   p_joint 9.365385e-04

Joint ci ratio: 6.738484e-02	ci left: 8.950828e-04	ci right 9.577681e-04	k: 3380	n:3650000
Cons ci ratio: 2.338386e-01	ci left: 6.798952e-05	ci right 8.624387e-05	k: 280	n:3650000
KS ci ratio: 2.263903e-03	ci left: 4.504661e-01	ci right 4.514874e-01	k: 1646065	n:3650000
GABBR2   3650000 perm   5970 sec   (611 perm/sec)   p_kst 4.509767e-01   p_cons 7.671233e-05   p_joint 9.260274e-04

Joint ci ratio: 6.744485e-02	ci left: 8.910255e-04	ci right 9.534843e-04	k: 3374	n:3660000
Cons ci ratio: 2.338386e-01	ci left: 6.780376e-05	ci right 8.600824e-05	k: 280	n:3660000
KS ci ratio: 2.260801e-03	ci left: 4.504683e-01	ci right 4.514881e-01	k: 1650580	n:3660000
GABBR2   3660000 perm   6001 sec   (610 perm/sec)   p_kst 4.509781e-01   p_cons 7.650273e-05   p_joint 9.218579e-04

Joint ci ratio: 6.760552e-02	ci left: 8.843114e-04	ci right 9.464531e-04	k: 3358	n:3670000
Cons ci ratio: 2.334236e-01	ci left: 6.787554e-05	ci right 8.606228e-05	k: 281	n:3670000
KS ci ratio: 2.257665e-03	ci left: 4.504807e-01	ci right 4.514992e-01	k: 1655133	n:3670000
GABBR2   3670000 perm   6032 sec   (608 perm/sec)   p_kst 4.509899e-01   p_cons 7.656676e-05   p_joint 9.149864e-04

Joint ci ratio: 6.752517e-02	ci left: 8.840456e-04	ci right 9.460919e-04	k: 3366	n:3680000
Cons ci ratio: 2.330108e-01	ci left: 6.794696e-05	ci right 8.611600e-05	k: 282	n:3680000
KS ci ratio: 2.254629e-03	ci left: 4.504741e-01	ci right 4.514912e-01	k: 1659616	n:3680000
GABBR2   3680000 perm   6062 sec   (607 perm/sec)   p_kst 4.509826e-01   p_cons 7.663043e-05   p_joint 9.146739e-04

Joint ci ratio: 6.766621e-02	ci left: 8.779198e-04	ci right 9.396699e-04	k: 3352	n:3690000
Cons ci ratio: 2.330108e-01	ci left: 6.776282e-05	ci right 8.588263e-05	k: 282	n:3690000
KS ci ratio: 2.251514e-03	ci left: 4.504876e-01	ci right 4.515033e-01	k: 1664173	n:3690000
GABBR2   3690000 perm   6092 sec   (606 perm/sec)   p_kst 4.509954e-01   p_cons 7.642276e-05   p_joint 9.084011e-04

Joint ci ratio: 6.753538e-02	ci left: 8.790012e-04	ci right 9.407031e-04	k: 3365	n:3700000
Cons ci ratio: 2.326002e-01	ci left: 6.783418e-05	ci right 8.593652e-05	k: 283	n:3700000
KS ci ratio: 2.248383e-03	ci left: 4.505072e-01	ci right 4.515215e-01	k: 1668753	n:3700000
GABBR2   3700000 perm   6123 sec   (604 perm/sec)   p_kst 4.510143e-01   p_cons 7.648649e-05   p_joint 9.094595e-04

Joint ci ratio: 6.745527e-02	ci left: 8.787519e-04	ci right 9.403602e-04	k: 3373	n:3710000
Cons ci ratio: 2.321918e-01	ci left: 6.790519e-05	ci right 8.599009e-05	k: 284	n:3710000
KS ci ratio: 2.245403e-03	ci left: 4.504965e-01	ci right 4.515095e-01	k: 1673221	n:3710000
GABBR2   3710000 perm   6154 sec   (603 perm/sec)   p_kst 4.510030e-01   p_cons 7.654987e-05   p_joint 9.091644e-04

Joint ci ratio: 6.745535e-02	ci left: 8.763896e-04	ci right 9.378324e-04	k: 3373	n:3720000
Cons ci ratio: 2.313813e-01	ci left: 6.822907e-05	ci right 8.632773e-05	k: 286	n:3720000
KS ci ratio: 2.242320e-03	ci left: 4.505109e-01	ci right 4.515225e-01	k: 1677782	n:3720000
GABBR2   3720000 perm   6184 sec   (602 perm/sec)   p_kst 4.510167e-01   p_cons 7.688172e-05   p_joint 9.067204e-04

Joint ci ratio: 6.734565e-02	ci left: 8.769394e-04	ci right 9.383169e-04	k: 3384	n:3730000
Cons ci ratio: 2.313814e-01	ci left: 6.804615e-05	ci right 8.609629e-05	k: 286	n:3730000
KS ci ratio: 2.239247e-03	ci left: 4.505260e-01	ci right 4.515362e-01	k: 1682346	n:3730000
GABBR2   3730000 perm   6215 sec   (600 perm/sec)   p_kst 4.510311e-01   p_cons 7.667560e-05   p_joint 9.072386e-04

Joint ci ratio: 6.727614e-02	ci left: 8.764348e-04	ci right 9.377112e-04	k: 3391	n:3740000
Cons ci ratio: 2.305793e-01	ci left: 6.836803e-05	ci right 8.643173e-05	k: 288	n:3740000
KS ci ratio: 2.236310e-03	ci left: 4.505138e-01	ci right 4.515227e-01	k: 1686808	n:3740000
GABBR2   3740000 perm   6247 sec   (599 perm/sec)   p_kst 4.510182e-01   p_cons 7.700535e-05   p_joint 9.066845e-04

Joint ci ratio: 6.721674e-02	ci left: 8.756707e-04	ci right 9.368375e-04	k: 3397	n:3750000
Cons ci ratio: 2.305793e-01	ci left: 6.818571e-05	ci right 8.620125e-05	k: 288	n:3750000
KS ci ratio: 2.233353e-03	ci left: 4.505085e-01	ci right 4.515161e-01	k: 1691296	n:3750000
GABBR2   3750000 perm   6278 sec   (597 perm/sec)   p_kst 4.510123e-01   p_cons 7.680000e-05   p_joint 9.058667e-04

Joint ci ratio: 6.718715e-02	ci left: 8.741262e-04	ci right 9.351572e-04	k: 3400	n:3760000
Cons ci ratio: 2.297855e-01	ci left: 6.850561e-05	ci right 8.653452e-05	k: 290	n:3760000
KS ci ratio: 2.230420e-03	ci left: 4.505007e-01	ci right 4.515068e-01	k: 1695774	n:3760000
GABBR2   3760000 perm   6311 sec   (596 perm/sec)   p_kst 4.510037e-01   p_cons 7.712766e-05   p_joint 9.042553e-04

Joint ci ratio: 6.750584e-02	ci left: 8.634623e-04	ci right 9.240459e-04	k: 3368	n:3770000
Cons ci ratio: 2.293917e-01	ci left: 6.857390e-05	ci right 8.658547e-05	k: 291	n:3770000
KS ci ratio: 2.227466e-03	ci left: 4.505000e-01	ci right 4.515048e-01	k: 1700279	n:3770000
GABBR2   3770000 perm   6343 sec   (594 perm/sec)   p_kst 4.510024e-01   p_cons 7.718833e-05   p_joint 8.933687e-04

Joint ci ratio: 6.742584e-02	ci left: 8.632587e-04	ci right 9.237534e-04	k: 3376	n:3780000
Cons ci ratio: 2.293918e-01	ci left: 6.839248e-05	ci right 8.635641e-05	k: 291	n:3780000
KS ci ratio: 2.224528e-03	ci left: 4.504983e-01	ci right 4.515018e-01	k: 1704780	n:3780000
GABBR2   3780000 perm   6374 sec   (593 perm/sec)   p_kst 4.510000e-01   p_cons 7.698413e-05   p_joint 8.931217e-04

Joint ci ratio: 6.734613e-02	ci left: 8.630562e-04	ci right 9.234625e-04	k: 3384	n:3790000
Cons ci ratio: 2.290000e-01	ci left: 6.846073e-05	ci right 8.640753e-05	k: 292	n:3790000
KS ci ratio: 2.221716e-03	ci left: 4.504712e-01	ci right 4.514734e-01	k: 1709185	n:3790000
GABBR2   3790000 perm   6406 sec   (592 perm/sec)   p_kst 4.509723e-01   p_cons 7.704485e-05   p_joint 8.928760e-04

Joint ci ratio: 6.724686e-02	ci left: 8.633723e-04	ci right 9.237082e-04	k: 3394	n:3800000
Cons ci ratio: 2.290000e-01	ci left: 6.828057e-05	ci right 8.618014e-05	k: 292	n:3800000
KS ci ratio: 2.218792e-03	ci left: 4.504715e-01	ci right 4.514723e-01	k: 1713693	n:3800000
GABBR2   3800000 perm   6437 sec   (590 perm/sec)   p_kst 4.509718e-01   p_cons 7.684211e-05   p_joint 8.931579e-04

Joint ci ratio: 6.716778e-02	ci left: 8.631707e-04	ci right 9.234188e-04	k: 3402	n:3810000
Cons ci ratio: 2.282224e-01	ci left: 6.859623e-05	ci right 8.650889e-05	k: 294	n:3810000
KS ci ratio: 2.215986e-03	ci left: 4.504480e-01	ci right 4.514476e-01	k: 1718111	n:3810000
GABBR2   3810000 perm   6469 sec   (589 perm/sec)   p_kst 4.509478e-01   p_cons 7.716535e-05   p_joint 8.929134e-04

Joint ci ratio: 6.705947e-02	ci left: 8.637424e-04	ci right 9.239293e-04	k: 3413	n:3820000
Cons ci ratio: 2.278365e-01	ci left: 6.866349e-05	ci right 8.655913e-05	k: 295	n:3820000
KS ci ratio: 2.213138e-03	ci left: 4.504365e-01	ci right 4.514348e-01	k: 1722574	n:3820000
GABBR2   3820000 perm   6500 sec   (588 perm/sec)   p_kst 4.509356e-01   p_cons 7.722513e-05   p_joint 8.934555e-04

Joint ci ratio: 6.695168e-02	ci left: 8.643111e-04	ci right 9.244371e-04	k: 3424	n:3830000
Cons ci ratio: 2.278365e-01	ci left: 6.848421e-05	ci right 8.633313e-05	k: 295	n:3830000
KS ci ratio: 2.210290e-03	ci left: 4.504277e-01	ci right 4.514246e-01	k: 1727047	n:3830000
GABBR2   3830000 perm   6532 sec   (586 perm/sec)   p_kst 4.509261e-01   p_cons 7.702350e-05   p_joint 8.939948e-04

Joint ci ratio: 6.684440e-02	ci left: 8.648770e-04	ci right 9.249422e-04	k: 3435	n:3840000
Cons ci ratio: 2.278366e-01	ci left: 6.830587e-05	ci right 8.610831e-05	k: 295	n:3840000
KS ci ratio: 2.207314e-03	ci left: 4.504499e-01	ci right 4.514455e-01	k: 1731639	n:3840000
GABBR2   3840000 perm   6564 sec   (585 perm/sec)   p_kst 4.509477e-01   p_cons 7.682292e-05   p_joint 8.945313e-04

Joint ci ratio: 6.686396e-02	ci left: 8.621197e-04	ci right 9.220117e-04	k: 3433	n:3850000
Cons ci ratio: 2.278366e-01	ci left: 6.812845e-05	ci right 8.588465e-05	k: 295	n:3850000
KS ci ratio: 2.204467e-03	ci left: 4.504457e-01	ci right 4.514401e-01	k: 1736130	n:3850000
GABBR2   3850000 perm   6596 sec   (584 perm/sec)   p_kst 4.509429e-01   p_cons 7.662338e-05   p_joint 8.916883e-04

Joint ci ratio: 6.677651e-02	ci left: 8.621789e-04	ci right 9.219936e-04	k: 3442	n:3860000
Cons ci ratio: 2.274527e-01	ci left: 6.819624e-05	ci right 8.593596e-05	k: 296	n:3860000
KS ci ratio: 2.201566e-03	ci left: 4.504561e-01	ci right 4.514491e-01	k: 1740677	n:3860000
GABBR2   3860000 perm   6629 sec   (582 perm/sec)   p_kst 4.509526e-01   p_cons 7.668394e-05   p_joint 8.917098e-04

Joint ci ratio: 6.669907e-02	ci left: 8.619837e-04	ci right 9.217129e-04	k: 3450	n:3870000
Cons ci ratio: 2.270707e-01	ci left: 6.826371e-05	ci right 8.598699e-05	k: 297	n:3870000
KS ci ratio: 2.198718e-03	ci left: 4.504571e-01	ci right 4.514489e-01	k: 1745188	n:3870000
GABBR2   3870000 perm   6661 sec   (581 perm/sec)   p_kst 4.509530e-01   p_cons 7.674419e-05   p_joint 8.914729e-04

Joint ci ratio: 6.670883e-02	ci left: 8.595087e-04	ci right 9.190753e-04	k: 3449	n:3880000
Cons ci ratio: 2.270708e-01	ci left: 6.808778e-05	ci right 8.576538e-05	k: 297	n:3880000
KS ci ratio: 2.195859e-03	ci left: 4.504630e-01	ci right 4.514535e-01	k: 1749718	n:3880000
GABBR2   3880000 perm   6694 sec   (580 perm/sec)   p_kst 4.509582e-01   p_cons 7.654639e-05   p_joint 8.889175e-04

Joint ci ratio: 6.663162e-02	ci left: 8.593214e-04	ci right 9.188035e-04	k: 3457	n:3890000
Cons ci ratio: 2.270708e-01	ci left: 6.791274e-05	ci right 8.554490e-05	k: 297	n:3890000
KS ci ratio: 2.192995e-03	ci left: 4.504728e-01	ci right 4.514620e-01	k: 1754263	n:3890000
GABBR2   3890000 perm   6726 sec   (578 perm/sec)   p_kst 4.509674e-01   p_cons 7.634961e-05   p_joint 8.886889e-04

Joint ci ratio: 6.689359e-02	ci left: 8.503104e-04	ci right 9.094091e-04	k: 3430	n:3900000
Cons ci ratio: 2.266907e-01	ci left: 6.798045e-05	ci right 8.559651e-05	k: 298	n:3900000
KS ci ratio: 2.190204e-03	ci left: 4.504684e-01	ci right 4.514563e-01	k: 1758753	n:3900000
GABBR2   3900000 perm   6758 sec   (577 perm/sec)   p_kst 4.509623e-01   p_cons 7.641026e-05   p_joint 8.794872e-04

Joint ci ratio: 6.682548e-02	ci left: 8.498960e-04	ci right 9.089035e-04	k: 3437	n:3910000
Cons ci ratio: 2.266908e-01	ci left: 6.780658e-05	ci right 8.537760e-05	k: 298	n:3910000
KS ci ratio: 2.187364e-03	ci left: 4.504775e-01	ci right 4.514642e-01	k: 1763296	n:3910000
GABBR2   3910000 perm   6791 sec   (576 perm/sec)   p_kst 4.509708e-01   p_cons 7.621483e-05   p_joint 8.790281e-04

Joint ci ratio: 6.670913e-02	ci left: 8.507380e-04	ci right 9.096971e-04	k: 3449	n:3920000
Cons ci ratio: 2.266908e-01	ci left: 6.763361e-05	ci right 8.515980e-05	k: 298	n:3920000
KS ci ratio: 2.184568e-03	ci left: 4.504790e-01	ci right 4.514644e-01	k: 1767809	n:3920000
GABBR2   3920000 perm   6822 sec   (575 perm/sec)   p_kst 4.509717e-01   p_cons 7.602041e-05   p_joint 8.798469e-04

Joint ci ratio: 6.661265e-02	ci left: 8.510754e-04	ci right 9.099693e-04	k: 3459	n:3930000
Cons ci ratio: 2.266908e-01	ci left: 6.746151e-05	ci right 8.494311e-05	k: 298	n:3930000
KS ci ratio: 2.181771e-03	ci left: 4.504833e-01	ci right 4.514674e-01	k: 1772333	n:3930000
GABBR2   3930000 perm   6854 sec   (573 perm/sec)   p_kst 4.509753e-01   p_cons 7.582697e-05   p_joint 8.801527e-04

Joint ci ratio: 6.654538e-02	ci left: 8.506624e-04	ci right 9.094660e-04	k: 3466	n:3940000
Cons ci ratio: 2.266908e-01	ci left: 6.729029e-05	ci right 8.472752e-05	k: 298	n:3940000
KS ci ratio: 2.179078e-03	ci left: 4.504662e-01	ci right 4.514491e-01	k: 1776773	n:3940000
GABBR2   3940000 perm   6888 sec   (572 perm/sec)   p_kst 4.509576e-01   p_cons 7.563452e-05   p_joint 8.796954e-04

Joint ci ratio: 6.645918e-02	ci left: 8.507494e-04	ci right 9.094799e-04	k: 3475	n:3950000
Cons ci ratio: 2.263127e-01	ci left: 6.735873e-05	ci right 8.478052e-05	k: 299	n:3950000
KS ci ratio: 2.176426e-03	ci left: 4.504424e-01	ci right 4.514240e-01	k: 1781186	n:3950000
GABBR2   3950000 perm   6921 sec   (571 perm/sec)   p_kst 4.509332e-01   p_cons 7.569620e-05   p_joint 8.797468e-04

Joint ci ratio: 6.503297e-02	ci left: 8.868512e-04	ci right 9.467107e-04	k: 3629	n:3960000
Cons ci ratio: 2.255620e-01	ci left: 6.766510e-05	ci right 8.510001e-05	k: 301	n:3960000
KS ci ratio: 2.173713e-03	ci left: 4.504346e-01	ci right 4.514150e-01	k: 1785662	n:3960000
GABBR2   3960000 perm   6953 sec   (570 perm/sec)   p_kst 4.509247e-01   p_cons 7.601010e-05   p_joint 9.164141e-04

Joint ci ratio: 6.497037e-02	ci left: 8.863519e-04	ci right 9.461179e-04	k: 3636	n:3970000
Cons ci ratio: 2.255620e-01	ci left: 6.749466e-05	ci right 8.488566e-05	k: 301	n:3970000
KS ci ratio: 2.170906e-03	ci left: 4.504505e-01	ci right 4.514297e-01	k: 1790232	n:3970000
GABBR2   3970000 perm   6985 sec   (568 perm/sec)   p_kst 4.509401e-01   p_cons 7.581864e-05   p_joint 9.158690e-04

Joint ci ratio: 6.486343e-02	ci left: 8.870911e-04	ci right 9.468047e-04	k: 3648	n:3980000
Cons ci ratio: 2.255621e-01	ci left: 6.732508e-05	ci right 8.467238e-05	k: 301	n:3980000
KS ci ratio: 2.168117e-03	ci left: 4.504648e-01	ci right 4.514428e-01	k: 1794796	n:3980000
GABBR2   3980000 perm   7018 sec   (567 perm/sec)   p_kst 4.509538e-01   p_cons 7.562814e-05   p_joint 9.165829e-04

Joint ci ratio: 6.474816e-02	ci left: 8.880731e-04	ci right 9.477427e-04	k: 3661	n:3990000
Cons ci ratio: 2.255621e-01	ci left: 6.715634e-05	ci right 8.446017e-05	k: 301	n:3990000
KS ci ratio: 2.165303e-03	ci left: 4.504874e-01	ci right 4.514641e-01	k: 1799393	n:3990000
GABBR2   3990000 perm   7052 sec   (566 perm/sec)   p_kst 4.509757e-01   p_cons 7.543860e-05   p_joint 9.175439e-04

Joint ci ratio: 6.464231e-02	ci left: 8.888044e-04	ci right 9.484218e-04	k: 3673	n:4000000
Cons ci ratio: 2.255621e-01	ci left: 6.698845e-05	ci right 8.424902e-05	k: 301	n:4000000
KS ci ratio: 2.162543e-03	ci left: 4.504998e-01	ci right 4.514753e-01	k: 1803950	n:4000000
GABBR2   4000000 perm   7085 sec   (565 perm/sec)   p_kst 4.509875e-01   p_cons 7.525000e-05   p_joint 9.182500e-04

Joint ci ratio: 6.458084e-02	ci left: 8.883054e-04	ci right 9.478305e-04	k: 3680	n:4010000
Cons ci ratio: 2.251896e-01	ci left: 6.705670e-05	ci right 8.430235e-05	k: 302	n:4010000
KS ci ratio: 2.159912e-03	ci left: 4.504850e-01	ci right 4.514593e-01	k: 1808398	n:4010000
GABBR2   4010000 perm   7118 sec   (563 perm/sec)   p_kst 4.509721e-01   p_cons 7.531172e-05   p_joint 9.177057e-04

Joint ci ratio: 6.496180e-02	ci left: 8.755722e-04	ci right 9.346032e-04	k: 3637	n:4020000
Cons ci ratio: 2.251896e-01	ci left: 6.688989e-05	ci right 8.409264e-05	k: 302	n:4020000
KS ci ratio: 2.157225e-03	ci left: 4.504854e-01	ci right 4.514585e-01	k: 1812907	n:4020000
GABBR2   4020000 perm   7151 sec   (562 perm/sec)   p_kst 4.509719e-01   p_cons 7.512438e-05   p_joint 9.047264e-04

Joint ci ratio: 6.837659e-02	ci left: 7.870205e-04	ci right 8.429812e-04	k: 3283	n:4030000
Cons ci ratio: 2.244500e-01	ci left: 6.719224e-05	ci right 8.440815e-05	k: 304	n:4030000
KS ci ratio: 2.160041e-03	ci left: 4.492251e-01	ci right 4.501968e-01	k: 1812335	n:4030000
GABBR2   4030000 perm   7183 sec   (561 perm/sec)   p_kst 4.497109e-01   p_cons 7.543424e-05   p_joint 8.146402e-04

Joint ci ratio: 6.827270e-02	ci left: 7.875054e-04	ci right 8.434121e-04	k: 3293	n:4040000
Cons ci ratio: 2.240830e-01	ci left: 6.725954e-05	ci right 8.446063e-05	k: 305	n:4040000
KS ci ratio: 2.157326e-03	ci left: 4.492351e-01	ci right 4.502055e-01	k: 1816870	n:4040000
GABBR2   4040000 perm   7215 sec   (560 perm/sec)   p_kst 4.497203e-01   p_cons 7.549505e-05   p_joint 8.150990e-04

Joint ci ratio: 6.817962e-02	ci left: 7.877452e-04	ci right 8.435897e-04	k: 3302	n:4050000
Cons ci ratio: 2.233542e-01	ci left: 6.755963e-05	ci right 8.477354e-05	k: 307	n:4050000
KS ci ratio: 2.154695e-03	ci left: 4.492278e-01	ci right 4.501970e-01	k: 1821335	n:4050000
GABBR2   4050000 perm   7248 sec   (559 perm/sec)   p_kst 4.497123e-01   p_cons 7.580247e-05   p_joint 8.153086e-04

Joint ci ratio: 6.821069e-02	ci left: 7.850786e-04	ci right 8.407604e-04	k: 3299	n:4060000
Cons ci ratio: 2.222743e-01	ci left: 6.809091e-05	ci right 8.534482e-05	k: 310	n:4060000
KS ci ratio: 2.152062e-03	ci left: 4.492234e-01	ci right 4.501914e-01	k: 1825812	n:4060000
GABBR2   4060000 perm   7282 sec   (558 perm/sec)   p_kst 4.497074e-01   p_cons 7.635468e-05   p_joint 8.125616e-04

Joint ci ratio: 6.811786e-02	ci left: 7.853233e-04	ci right 8.409437e-04	k: 3308	n:4070000
Cons ci ratio: 2.219178e-01	ci left: 6.815564e-05	ci right 8.539447e-05	k: 311	n:4070000
KS ci ratio: 2.149388e-03	ci left: 4.492304e-01	ci right 4.501972e-01	k: 1830335	n:4070000
GABBR2   4070000 perm   7316 sec   (556 perm/sec)   p_kst 4.497138e-01   p_cons 7.641278e-05   p_joint 8.127764e-04

Joint ci ratio: 6.803567e-02	ci left: 7.853259e-04	ci right 8.408767e-04	k: 3316	n:4080000
Cons ci ratio: 2.215630e-01	ci left: 6.822008e-05	ci right 8.544386e-05	k: 312	n:4080000
KS ci ratio: 2.146807e-03	ci left: 4.492184e-01	ci right 4.501841e-01	k: 1834781	n:4080000
GABBR2   4080000 perm   7350 sec   (555 perm/sec)   p_kst 4.497012e-01   p_cons 7.647059e-05   p_joint 8.127451e-04

Joint ci ratio: 6.789250e-02	ci left: 7.867706e-04	ci right 8.423019e-04	k: 3330	n:4090000
Cons ci ratio: 2.212099e-01	ci left: 6.828422e-05	ci right 8.549299e-05	k: 313	n:4090000
KS ci ratio: 2.144102e-03	ci left: 4.492374e-01	ci right 4.502018e-01	k: 1839353	n:4090000
GABBR2   4090000 perm   7384 sec   (554 perm/sec)   p_kst 4.497196e-01   p_cons 7.652812e-05   p_joint 8.141809e-04

Joint ci ratio: 6.325383e-02	ci left: 9.062470e-04	ci right 9.656809e-04	k: 3836	n:4100000
Cons ci ratio: 2.201606e-01	ci left: 6.880894e-05	ci right 8.605655e-05	k: 316	n:4100000
KS ci ratio: 2.141472e-03	ci left: 4.492411e-01	ci right 4.502044e-01	k: 1843863	n:4100000
GABBR2   4100000 perm   7417 sec   (553 perm/sec)   p_kst 4.497227e-01   p_cons 7.707317e-05   p_joint 9.356098e-04

Joint ci ratio: 6.317978e-02	ci left: 9.061972e-04	ci right 9.655557e-04	k: 3845	n:4110000
Cons ci ratio: 2.201606e-01	ci left: 6.864152e-05	ci right 8.584717e-05	k: 316	n:4110000
KS ci ratio: 2.138810e-03	ci left: 4.492545e-01	ci right 4.502166e-01	k: 1848413	n:4110000
GABBR2   4110000 perm   7451 sec   (552 perm/sec)   p_kst 4.497355e-01   p_cons 7.688564e-05   p_joint 9.355231e-04

Joint ci ratio: 6.313878e-02	ci left: 9.051921e-04	ci right 9.644449e-04	k: 3850	n:4120000
Cons ci ratio: 2.201606e-01	ci left: 6.847491e-05	ci right 8.563880e-05	k: 316	n:4120000
KS ci ratio: 2.136202e-03	ci left: 4.492574e-01	ci right 4.502184e-01	k: 1852920	n:4120000
GABBR2   4120000 perm   7486 sec   (550 perm/sec)   p_kst 4.497379e-01   p_cons 7.669903e-05   p_joint 9.344660e-04

Joint ci ratio: 6.307331e-02	ci left: 9.049068e-04	ci right 9.640773e-04	k: 3858	n:4130000
Cons ci ratio: 2.198142e-01	ci left: 6.853791e-05	ci right 8.568690e-05	k: 317	n:4130000
KS ci ratio: 2.133584e-03	ci left: 4.492652e-01	ci right 4.502250e-01	k: 1857447	n:4130000
GABBR2   4130000 perm   7521 sec   (549 perm/sec)   p_kst 4.497450e-01   p_cons 7.675545e-05   p_joint 9.341404e-04

Joint ci ratio: 6.299989e-02	ci left: 9.048607e-04	ci right 9.639568e-04	k: 3867	n:4140000
Cons ci ratio: 2.194694e-01	ci left: 6.860061e-05	ci right 8.573474e-05	k: 318	n:4140000
KS ci ratio: 2.130917e-03	ci left: 4.492862e-01	ci right 4.502448e-01	k: 1862029	n:4140000
GABBR2   4140000 perm   7556 sec   (548 perm/sec)   p_kst 4.497655e-01   p_cons 7.681159e-05   p_joint 9.340580e-04

Joint ci ratio: 6.291861e-02	ci left: 9.050520e-04	ci right 9.640816e-04	k: 3877	n:4150000
Cons ci ratio: 2.194694e-01	ci left: 6.843531e-05	ci right 8.552815e-05	k: 318	n:4150000
KS ci ratio: 2.128263e-03	ci left: 4.493066e-01	ci right 4.502641e-01	k: 1866609	n:4150000
GABBR2   4150000 perm   7590 sec   (547 perm/sec)   p_kst 4.497853e-01   p_cons 7.662651e-05   p_joint 9.342169e-04

Joint ci ratio: 6.281339e-02	ci left: 9.059523e-04	ci right 9.649382e-04	k: 3890	n:4160000
Cons ci ratio: 2.191262e-01	ci left: 6.849798e-05	ci right 8.557612e-05	k: 319	n:4160000
KS ci ratio: 2.125739e-03	ci left: 4.492988e-01	ci right 4.502551e-01	k: 1871072	n:4160000
GABBR2   4160000 perm   7625 sec   (546 perm/sec)   p_kst 4.497769e-01   p_cons 7.668269e-05   p_joint 9.350962e-04

Joint ci ratio: 7.446982e-02	ci left: 6.392963e-04	ci right 6.889793e-04	k: 2768	n:4170000
Cons ci ratio: 2.530276e-01	ci left: 5.027779e-05	ci right 6.505956e-05	k: 239	n:4170000
KS ci ratio: 2.123131e-03	ci left: 4.493128e-01	ci right 4.502680e-01	k: 1875626	n:4170000
GABBR2   4170000 perm   7659 sec   (544 perm/sec)   p_kst 4.497904e-01   p_cons 5.731415e-05   p_joint 6.637890e-04

Joint ci ratio: 7.438927e-02	ci left: 6.391756e-04	ci right 6.887931e-04	k: 2774	n:4180000
Cons ci ratio: 2.525021e-01	ci left: 5.038159e-05	ci right 6.515827e-05	k: 240	n:4180000
KS ci ratio: 2.120557e-03	ci left: 4.493211e-01	ci right 4.502751e-01	k: 1880156	n:4180000
GABBR2   4180000 perm   7694 sec   (543 perm/sec)   p_kst 4.497981e-01   p_cons 5.741627e-05   p_joint 6.636364e-04

Joint ci ratio: 7.601000e-02	ci left: 6.102511e-04	ci right 6.587010e-04	k: 2657	n:4190000
Cons ci ratio: 2.519798e-01	ci left: 5.048492e-05	ci right 6.525648e-05	k: 241	n:4190000
KS ci ratio: 2.118018e-03	ci left: 4.493233e-01	ci right 4.502762e-01	k: 1884661	n:4190000
GABBR2   4190000 perm   7729 sec   (542 perm/sec)   p_kst 4.497998e-01   p_cons 5.751790e-05   p_joint 6.341289e-04

Joint ci ratio: 7.593862e-02	ci left: 6.099660e-04	ci right 6.583458e-04	k: 2662	n:4200000
Cons ci ratio: 2.514608e-01	ci left: 5.058780e-05	ci right 6.535419e-05	k: 242	n:4200000
KS ci ratio: 2.115526e-03	ci left: 4.493168e-01	ci right 4.502685e-01	k: 1889129	n:4200000
GABBR2   4200000 perm   7764 sec   (541 perm/sec)   p_kst 4.497926e-01   p_cons 5.761905e-05   p_joint 6.338095e-04

Joint ci ratio: 7.599581e-02	ci left: 6.075851e-04	ci right 6.558139e-04	k: 2658	n:4210000
Cons ci ratio: 2.514608e-01	ci left: 5.046764e-05	ci right 6.519896e-05	k: 242	n:4210000
KS ci ratio: 2.113028e-03	ci left: 4.493136e-01	ci right 4.502642e-01	k: 1893611	n:4210000
GABBR2   4210000 perm   7803 sec   (540 perm/sec)   p_kst 4.497888e-01   p_cons 5.748219e-05   p_joint 6.313539e-04

Joint ci ratio: 7.689823e-02	ci left: 5.917340e-04	ci right 6.392873e-04	k: 2596	n:4220000
Cons ci ratio: 2.514608e-01	ci left: 5.034805e-05	ci right 6.504446e-05	k: 242	n:4220000
KS ci ratio: 2.110532e-03	ci left: 4.493120e-01	ci right 4.502615e-01	k: 1898100	n:4220000
GABBR2   4220000 perm   7838 sec   (538 perm/sec)   p_kst 4.497867e-01   p_cons 5.734597e-05   p_joint 6.151659e-04

Joint ci ratio: 7.682433e-02	ci left: 5.914944e-04	ci right 6.389807e-04	k: 2601	n:4230000
Cons ci ratio: 2.509450e-01	ci left: 5.045054e-05	ci right 6.514195e-05	k: 243	n:4230000
KS ci ratio: 2.108074e-03	ci left: 4.493036e-01	ci right 4.502520e-01	k: 1902560	n:4230000
GABBR2   4230000 perm   7872 sec   (537 perm/sec)   p_kst 4.497778e-01   p_cons 5.744681e-05   p_joint 6.148936e-04

Joint ci ratio: 7.675063e-02	ci left: 5.912560e-04	ci right 6.386756e-04	k: 2606	n:4240000
Cons ci ratio: 2.509450e-01	ci left: 5.033156e-05	ci right 6.498831e-05	k: 243	n:4240000
KS ci ratio: 2.105628e-03	ci left: 4.492943e-01	ci right 4.502416e-01	k: 1907016	n:4240000
GABBR2   4240000 perm   7908 sec   (536 perm/sec)   p_kst 4.497679e-01   p_cons 5.731132e-05   p_joint 6.146226e-04

Joint ci ratio: 7.669184e-02	ci left: 5.907879e-04	ci right 6.381321e-04	k: 2610	n:4250000
Cons ci ratio: 2.509451e-01	ci left: 5.021313e-05	ci right 6.483540e-05	k: 243	n:4250000
KS ci ratio: 2.103144e-03	ci left: 4.492961e-01	ci right 4.502423e-01	k: 1911519	n:4250000
GABBR2   4250000 perm   7942 sec   (535 perm/sec)   p_kst 4.497692e-01   p_cons 5.717647e-05   p_joint 6.141176e-04

Joint ci ratio: 7.658923e-02	ci left: 5.910128e-04	ci right 6.383088e-04	k: 2617	n:4260000
Cons ci ratio: 2.509451e-01	ci left: 5.009526e-05	ci right 6.468320e-05	k: 243	n:4260000
KS ci ratio: 2.100739e-03	ci left: 4.492815e-01	ci right 4.502265e-01	k: 1915952	n:4260000
GABBR2   4260000 perm   7977 sec   (534 perm/sec)   p_kst 4.497540e-01   p_cons 5.704225e-05   p_joint 6.143192e-04

Joint ci ratio: 7.336518e-02	ci left: 6.436331e-04	ci right 6.928795e-04	k: 2852	n:4270000
Cons ci ratio: 2.509451e-01	ci left: 4.997794e-05	ci right 6.453172e-05	k: 243	n:4270000
KS ci ratio: 2.237820e-03	ci left: 4.176668e-01	ci right 4.186027e-01	k: 1785435	n:4270000
GABBR2   4270000 perm   8011 sec   (533 perm/sec)   p_kst 4.181347e-01   p_cons 5.690867e-05   p_joint 6.679157e-04

Joint ci ratio: 7.332667e-02	ci left: 6.428173e-04	ci right 6.919744e-04	k: 2855	n:4280000
Cons ci ratio: 2.509451e-01	ci left: 4.986117e-05	ci right 6.438094e-05	k: 243	n:4280000
KS ci ratio: 2.235144e-03	ci left: 4.176803e-01	ci right 4.186151e-01	k: 1789672	n:4280000
GABBR2   4280000 perm   8046 sec   (532 perm/sec)   p_kst 4.181477e-01   p_cons 5.677570e-05   p_joint 6.670561e-04

Joint ci ratio: 7.318583e-02	ci left: 6.438361e-04	ci right 6.929725e-04	k: 2866	n:4290000
Cons ci ratio: 2.494164e-01	ci left: 5.040040e-05	ci right 6.497392e-05	k: 246	n:4290000
KS ci ratio: 2.232456e-03	ci left: 4.176987e-01	ci right 4.186324e-01	k: 1793930	n:4290000
GABBR2   4290000 perm   8082 sec   (531 perm/sec)   p_kst 4.181655e-01   p_cons 5.734266e-05   p_joint 6.680653e-04

Joint ci ratio: 7.313485e-02	ci left: 6.432520e-04	ci right 6.923082e-04	k: 2870	n:4300000
Cons ci ratio: 2.494164e-01	ci left: 5.028319e-05	ci right 6.482282e-05	k: 246	n:4300000
KS ci ratio: 2.229787e-03	ci left: 4.177149e-01	ci right 4.186476e-01	k: 1798179	n:4300000
GABBR2   4300000 perm   8116 sec   (530 perm/sec)   p_kst 4.181812e-01   p_cons 5.720930e-05   p_joint 6.674419e-04

Joint ci ratio: 7.309670e-02	ci left: 6.424428e-04	ci right 6.914107e-04	k: 2873	n:4310000
Cons ci ratio: 2.494165e-01	ci left: 5.016652e-05	ci right 6.467242e-05	k: 246	n:4310000
KS ci ratio: 2.227237e-03	ci left: 4.177069e-01	ci right 4.186385e-01	k: 1802324	n:4310000
GABBR2   4310000 perm   8152 sec   (529 perm/sec)   p_kst 4.181726e-01   p_cons 5.707657e-05   p_joint 6.665893e-04

Joint ci ratio: 7.303322e-02	ci left: 6.420920e-04	ci right 6.909887e-04	k: 2878	n:4320000
Cons ci ratio: 2.489131e-01	ci left: 5.026743e-05	ci right 6.476862e-05	k: 247	n:4320000
KS ci ratio: 2.224734e-03	ci left: 4.176908e-01	ci right 4.186213e-01	k: 1806434	n:4320000
GABBR2   4320000 perm   8188 sec   (528 perm/sec)   p_kst 4.181560e-01   p_cons 5.717593e-05   p_joint 6.662037e-04

Joint ci ratio: 6.762032e-02	ci left: 7.492915e-04	ci right 8.019571e-04	k: 3357	n:4330000
Cons ci ratio: 2.479154e-01	ci left: 5.058448e-05	ci right 6.510963e-05	k: 249	n:4330000
KS ci ratio: 2.222097e-03	ci left: 4.177060e-01	ci right 4.186354e-01	k: 1810679	n:4330000
GABBR2   4330000 perm   8225 sec   (526 perm/sec)   p_kst 4.181707e-01   p_cons 5.750577e-05   p_joint 7.752887e-04

Joint ci ratio: 6.754995e-02	ci left: 7.491507e-04	ci right 8.017494e-04	k: 3364	n:4340000
Cons ci ratio: 2.479154e-01	ci left: 5.046792e-05	ci right 6.495961e-05	k: 249	n:4340000
KS ci ratio: 2.219564e-03	ci left: 4.177002e-01	ci right 4.186285e-01	k: 1814833	n:4340000
GABBR2   4340000 perm   8262 sec   (525 perm/sec)   p_kst 4.181643e-01   p_cons 5.737327e-05   p_joint 7.751152e-04

Joint ci ratio: 6.744979e-02	ci left: 7.496886e-04	ci right 8.022440e-04	k: 3374	n:4350000
Cons ci ratio: 2.474210e-01	ci left: 5.056752e-05	ci right 6.505440e-05	k: 250	n:4350000
KS ci ratio: 2.217043e-03	ci left: 4.176939e-01	ci right 4.186212e-01	k: 1818985	n:4350000
GABBR2   4350000 perm   8304 sec   (524 perm/sec)   p_kst 4.181575e-01   p_cons 5.747126e-05   p_joint 7.756322e-04

Joint ci ratio: 6.740988e-02	ci left: 7.488711e-04	ci right 8.013369e-04	k: 3378	n:4360000
Cons ci ratio: 2.469296e-01	ci left: 5.066670e-05	ci right 6.514873e-05	k: 251	n:4360000
KS ci ratio: 2.214486e-03	ci left: 4.176973e-01	ci right 4.186235e-01	k: 1823179	n:4360000
GABBR2   4360000 perm   8345 sec   (522 perm/sec)   p_kst 4.181603e-01   p_cons 5.756881e-05   p_joint 7.747706e-04

Joint ci ratio: 6.739996e-02	ci left: 7.473824e-04	ci right 7.997359e-04	k: 3379	n:4370000
Cons ci ratio: 2.469296e-01	ci left: 5.055075e-05	ci right 6.499964e-05	k: 251	n:4370000
KS ci ratio: 2.211949e-03	ci left: 4.176981e-01	ci right 4.186233e-01	k: 1827362	n:4370000
GABBR2   4370000 perm   8387 sec   (521 perm/sec)   p_kst 4.181606e-01   p_cons 5.743707e-05   p_joint 7.732265e-04

Joint ci ratio: 6.730046e-02	ci left: 7.479207e-04	ci right 8.002315e-04	k: 3389	n:4380000
Cons ci ratio: 2.469297e-01	ci left: 5.043534e-05	ci right 6.485124e-05	k: 251	n:4380000
KS ci ratio: 2.209418e-03	ci left: 4.176996e-01	ci right 4.186238e-01	k: 1831548	n:4380000
GABBR2   4380000 perm   8427 sec   (520 perm/sec)   p_kst 4.181616e-01   p_cons 5.730594e-05   p_joint 7.737443e-04

Joint ci ratio: 6.725090e-02	ci left: 7.473368e-04	ci right 7.995668e-04	k: 3394	n:4390000
Cons ci ratio: 2.469297e-01	ci left: 5.032045e-05	ci right 6.470352e-05	k: 251	n:4390000
KS ci ratio: 2.206897e-03	ci left: 4.177009e-01	ci right 4.186240e-01	k: 1835733	n:4390000
GABBR2   4390000 perm   8467 sec   (518 perm/sec)   p_kst 4.181624e-01   p_cons 5.717540e-05   p_joint 7.731207e-04

Joint ci ratio: 6.721135e-02	ci left: 7.465321e-04	ci right 7.986740e-04	k: 3398	n:4400000
Cons ci ratio: 2.469297e-01	ci left: 5.020609e-05	ci right 6.455647e-05	k: 251	n:4400000
KS ci ratio: 2.204394e-03	ci left: 4.177000e-01	ci right 4.186220e-01	k: 1839908	n:4400000
GABBR2   4400000 perm   8503 sec   (517 perm/sec)   p_kst 4.181609e-01   p_cons 5.704545e-05   p_joint 7.722727e-04

Joint ci ratio: 6.709299e-02	ci left: 7.475147e-04	ci right 7.996297e-04	k: 3410	n:4410000
Cons ci ratio: 2.469297e-01	ci left: 5.009224e-05	ci right 6.441008e-05	k: 251	n:4410000
KS ci ratio: 2.201948e-03	ci left: 4.176886e-01	ci right 4.186095e-01	k: 1844037	n:4410000
GABBR2   4410000 perm   8540 sec   (516 perm/sec)   p_kst 4.181490e-01   p_cons 5.691610e-05   p_joint 7.732426e-04

Joint ci ratio: 6.704389e-02	ci left: 7.469357e-04	ci right 7.989708e-04	k: 3415	n:4420000
Cons ci ratio: 2.469297e-01	ci left: 4.997891e-05	ci right 6.426436e-05	k: 251	n:4420000
KS ci ratio: 2.199503e-03	ci left: 4.176786e-01	ci right 4.185985e-01	k: 1848172	n:4420000
GABBR2   4420000 perm   8577 sec   (515 perm/sec)   p_kst 4.181385e-01   p_cons 5.678733e-05   p_joint 7.726244e-04

Joint ci ratio: 6.698510e-02	ci left: 7.465813e-04	ci right 7.985443e-04	k: 3421	n:4430000
Cons ci ratio: 2.469297e-01	ci left: 4.986609e-05	ci right 6.411929e-05	k: 251	n:4430000
KS ci ratio: 2.197062e-03	ci left: 4.176695e-01	ci right 4.185884e-01	k: 1852311	n:4430000
GABBR2   4430000 perm   8613 sec   (514 perm/sec)   p_kst 4.181289e-01   p_cons 5.665914e-05   p_joint 7.722348e-04

Joint ci ratio: 6.691670e-02	ci left: 7.464500e-04	ci right 7.983488e-04	k: 3428	n:4440000
Cons ci ratio: 2.469298e-01	ci left: 4.975378e-05	ci right 6.397488e-05	k: 251	n:4440000
KS ci ratio: 2.194516e-03	ci left: 4.176857e-01	ci right 4.186036e-01	k: 1856562	n:4440000
GABBR2   4440000 perm   8649 sec   (513 perm/sec)   p_kst 4.181446e-01   p_cons 5.653153e-05   p_joint 7.720721e-04

Joint ci ratio: 6.683877e-02	ci left: 7.465403e-04	ci right 7.983825e-04	k: 3436	n:4450000
Cons ci ratio: 2.464413e-01	ci left: 4.985280e-05	ci right 6.406970e-05	k: 252	n:4450000
KS ci ratio: 2.192022e-03	ci left: 4.176922e-01	ci right 4.186090e-01	k: 1860770	n:4450000
GABBR2   4450000 perm   8686 sec   (512 perm/sec)   p_kst 4.181506e-01   p_cons 5.662921e-05   p_joint 7.721348e-04

Joint ci ratio: 6.675142e-02	ci left: 7.468507e-04	ci right 7.986441e-04	k: 3445	n:4460000
Cons ci ratio: 2.454729e-01	ci left: 5.016182e-05	ci right 6.440206e-05	k: 254	n:4460000
KS ci ratio: 2.189479e-03	ci left: 4.177114e-01	ci right 4.186272e-01	k: 1865035	n:4460000
GABBR2   4460000 perm   8722 sec   (511 perm/sec)   p_kst 4.181693e-01   p_cons 5.695067e-05   p_joint 7.724215e-04

Joint ci ratio: 6.669340e-02	ci left: 7.464997e-04	ci right 7.982221e-04	k: 3451	n:4470000
Cons ci ratio: 2.454729e-01	ci left: 5.004960e-05	ci right 6.425798e-05	k: 254	n:4470000
KS ci ratio: 2.186982e-03	ci left: 4.177223e-01	ci right 4.186371e-01	k: 1869263	n:4470000
GABBR2   4470000 perm   8758 sec   (510 perm/sec)   p_kst 4.181796e-01   p_cons 5.682327e-05   p_joint 7.720358e-04

Joint ci ratio: 6.662589e-02	ci left: 7.463699e-04	ci right 7.980289e-04	k: 3458	n:4480000
Cons ci ratio: 2.454729e-01	ci left: 4.993788e-05	ci right 6.411455e-05	k: 254	n:4480000
KS ci ratio: 2.184501e-03	ci left: 4.177314e-01	ci right 4.186451e-01	k: 1873483	n:4480000
GABBR2   4480000 perm   8794 sec   (509 perm/sec)   p_kst 4.181882e-01   p_cons 5.669643e-05   p_joint 7.718750e-04

Joint ci ratio: 6.706394e-02	ci left: 7.348527e-04	ci right 7.860619e-04	k: 3413	n:4490000
Cons ci ratio: 2.454729e-01	ci left: 4.982666e-05	ci right 6.397175e-05	k: 254	n:4490000
KS ci ratio: 2.182102e-03	ci left: 4.177241e-01	ci right 4.186368e-01	k: 1877630	n:4490000
GABBR2   4490000 perm   8830 sec   (508 perm/sec)   p_kst 4.181804e-01   p_cons 5.657016e-05   p_joint 7.601336e-04

Joint ci ratio: 6.702472e-02	ci left: 7.340937e-04	ci right 7.852189e-04	k: 3417	n:4500000
Cons ci ratio: 2.454729e-01	ci left: 4.971594e-05	ci right 6.382960e-05	k: 254	n:4500000
KS ci ratio: 2.179704e-03	ci left: 4.177184e-01	ci right 4.186301e-01	k: 1881784	n:4500000
GABBR2   4500000 perm   8868 sec   (507 perm/sec)   p_kst 4.181742e-01   p_cons 5.644444e-05   p_joint 7.593333e-04

Joint ci ratio: 6.696598e-02	ci left: 7.337741e-04	ci right 7.848305e-04	k: 3423	n:4510000
Cons ci ratio: 2.454730e-01	ci left: 4.960570e-05	ci right 6.368807e-05	k: 254	n:4510000
KS ci ratio: 2.177265e-03	ci left: 4.177236e-01	ci right 4.186343e-01	k: 1885987	n:4510000
GABBR2   4510000 perm   8905 sec   (506 perm/sec)   p_kst 4.181789e-01   p_cons 5.631929e-05   p_joint 7.589800e-04

Joint ci ratio: 6.688788e-02	ci left: 7.338910e-04	ci right 7.848937e-04	k: 3431	n:4520000
Cons ci ratio: 2.454730e-01	ci left: 4.949595e-05	ci right 6.354716e-05	k: 254	n:4520000
KS ci ratio: 2.174804e-03	ci left: 4.177355e-01	ci right 4.186452e-01	k: 1890220	n:4520000
GABBR2   4520000 perm   8941 sec   (506 perm/sec)   p_kst 4.181903e-01   p_cons 5.619469e-05   p_joint 7.590708e-04

Joint ci ratio: 6.677122e-02	ci left: 7.348756e-04	ci right 7.858543e-04	k: 3443	n:4530000
Cons ci ratio: 2.454730e-01	ci left: 4.938669e-05	ci right 6.340688e-05	k: 254	n:4530000
KS ci ratio: 2.172345e-03	ci left: 4.177488e-01	ci right 4.186575e-01	k: 1894460	n:4530000
GABBR2   4530000 perm   8978 sec   (505 perm/sec)   p_kst 4.182031e-01   p_cons 5.607064e-05   p_joint 7.600442e-04

Joint ci ratio: 6.881092e-02	ci left: 6.897336e-04	ci right 7.391006e-04	k: 3242	n:4540000
Cons ci ratio: 2.454730e-01	ci left: 4.927791e-05	ci right 6.326722e-05	k: 254	n:4540000
KS ci ratio: 2.169954e-03	ci left: 4.177489e-01	ci right 4.186565e-01	k: 1898640	n:4540000
GABBR2   4540000 perm   9015 sec   (504 perm/sec)   p_kst 4.182026e-01   p_cons 5.594714e-05   p_joint 7.140969e-04

Joint ci ratio: 6.875795e-02	ci left: 6.892977e-04	ci right 7.385940e-04	k: 3247	n:4550000
Cons ci ratio: 2.449931e-01	ci left: 4.937588e-05	ci right 6.336143e-05	k: 255	n:4550000
KS ci ratio: 2.167641e-03	ci left: 4.177329e-01	ci right 4.186395e-01	k: 1902747	n:4550000
GABBR2   4550000 perm   9053 sec   (503 perm/sec)   p_kst 4.181862e-01   p_cons 5.604396e-05   p_joint 7.136264e-04

Joint ci ratio: 6.869454e-02	ci left: 6.890792e-04	ci right 7.383127e-04	k: 3253	n:4560000
Cons ci ratio: 2.449931e-01	ci left: 4.926760e-05	ci right 6.322248e-05	k: 255	n:4560000
KS ci ratio: 2.165312e-03	ci left: 4.177224e-01	ci right 4.186281e-01	k: 1906879	n:4560000
GABBR2   4560000 perm   9091 sec   (502 perm/sec)   p_kst 4.181752e-01   p_cons 5.592105e-05   p_joint 7.133772e-04

Joint ci ratio: 6.852621e-02	ci left: 6.910125e-04	ci right 7.402583e-04	k: 3269	n:4570000
Cons ci ratio: 2.445160e-01	ci left: 4.936519e-05	ci right 6.331635e-05	k: 256	n:4570000
KS ci ratio: 2.162985e-03	ci left: 4.177131e-01	ci right 4.186178e-01	k: 1911016	n:4570000
GABBR2   4570000 perm   9128 sec   (501 perm/sec)   p_kst 4.181654e-01   p_cons 5.601751e-05   p_joint 7.153173e-04

Joint ci ratio: 6.846344e-02	ci left: 6.907913e-04	ci right 7.399745e-04	k: 3275	n:4580000
Cons ci ratio: 2.445160e-01	ci left: 4.925741e-05	ci right 6.317811e-05	k: 256	n:4580000
KS ci ratio: 2.160578e-03	ci left: 4.177235e-01	ci right 4.186272e-01	k: 1915243	n:4580000
GABBR2   4580000 perm   9165 sec   (500 perm/sec)   p_kst 4.181753e-01   p_cons 5.589520e-05   p_joint 7.150655e-04

Joint ci ratio: 6.909964e-02	ci left: 6.764390e-04	ci right 7.250658e-04	k: 3215	n:4590000
Cons ci ratio: 2.445160e-01	ci left: 4.915009e-05	ci right 6.304046e-05	k: 256	n:4590000
KS ci ratio: 2.158164e-03	ci left: 4.177374e-01	ci right 4.186401e-01	k: 1919486	n:4590000
GABBR2   4590000 perm   9202 sec   (499 perm/sec)   p_kst 4.181887e-01   p_cons 5.577342e-05   p_joint 7.004357e-04

Joint ci ratio: 6.899244e-02	ci left: 6.771049e-04	ci right 7.257010e-04	k: 3225	n:4600000
Cons ci ratio: 2.440417e-01	ci left: 4.924733e-05	ci right 6.313409e-05	k: 257	n:4600000
KS ci ratio: 2.155728e-03	ci left: 4.177581e-01	ci right 4.186598e-01	k: 1923761	n:4600000
GABBR2   4600000 perm   9239 sec   (498 perm/sec)   p_kst 4.182089e-01   p_cons 5.586957e-05   p_joint 7.010870e-04

Joint ci ratio: 6.887508e-02	ci left: 6.779811e-04	ci right 7.265541e-04	k: 3236	n:4610000
Cons ci ratio: 2.440417e-01	ci left: 4.914050e-05	ci right 6.299714e-05	k: 257	n:4610000
KS ci ratio: 2.153408e-03	ci left: 4.177540e-01	ci right 4.186548e-01	k: 1927922	n:4610000
GABBR2   4610000 perm   9276 sec   (497 perm/sec)   p_kst 4.182043e-01   p_cons 5.574837e-05   p_joint 7.019523e-04

Joint ci ratio: 6.882197e-02	ci left: 6.775773e-04	ci right 7.260823e-04	k: 3241	n:4620000
Cons ci ratio: 2.440417e-01	ci left: 4.903414e-05	ci right 6.286078e-05	k: 257	n:4620000
KS ci ratio: 2.151155e-03	ci left: 4.177367e-01	ci right 4.186365e-01	k: 1932022	n:4620000
GABBR2   4620000 perm   9312 sec   (496 perm/sec)   p_kst 4.181866e-01   p_cons 5.562771e-05   p_joint 7.015152e-04

Joint ci ratio: 6.875838e-02	ci left: 6.773874e-04	ci right 7.258323e-04	k: 3247	n:4630000
Cons ci ratio: 2.440417e-01	ci left: 4.892823e-05	ci right 6.272502e-05	k: 257	n:4630000
KS ci ratio: 2.148822e-03	ci left: 4.177392e-01	ci right 4.186380e-01	k: 1936213	n:4630000
GABBR2   4630000 perm   9350 sec   (495 perm/sec)   p_kst 4.181886e-01   p_cons 5.550756e-05   p_joint 7.012959e-04

Joint ci ratio: 6.871610e-02	ci left: 6.767748e-04	ci right 7.251449e-04	k: 3251	n:4640000
Cons ci ratio: 2.440417e-01	ci left: 4.882278e-05	ci right 6.258983e-05	k: 257	n:4640000
KS ci ratio: 2.146550e-03	ci left: 4.177296e-01	ci right 4.186274e-01	k: 1940348	n:4640000
GABBR2   4640000 perm   9387 sec   (494 perm/sec)   p_kst 4.181784e-01   p_cons 5.538793e-05   p_joint 7.006466e-04

Joint ci ratio: 6.916455e-02	ci left: 6.664427e-04	ci right 7.143977e-04	k: 3209	n:4650000
Cons ci ratio: 2.435701e-01	ci left: 4.891970e-05	ci right 6.268340e-05	k: 258	n:4650000
KS ci ratio: 2.144205e-03	ci left: 4.177381e-01	ci right 4.186349e-01	k: 1944567	n:4650000
GABBR2   4650000 perm   9425 sec   (493 perm/sec)   p_kst 4.181865e-01   p_cons 5.548387e-05   p_joint 6.901075e-04

Joint ci ratio: 6.905704e-02	ci left: 6.671214e-04	ci right 7.150476e-04	k: 3219	n:4660000
Cons ci ratio: 2.435702e-01	ci left: 4.881473e-05	ci right 6.254888e-05	k: 258	n:4660000
KS ci ratio: 2.141915e-03	ci left: 4.177360e-01	ci right 4.186319e-01	k: 1948737	n:4660000
GABBR2   4660000 perm   9462 sec   (492 perm/sec)   p_kst 4.181839e-01   p_cons 5.536481e-05   p_joint 6.907725e-04

Joint ci ratio: 6.898210e-02	ci left: 6.671659e-04	ci right 7.150413e-04	k: 3226	n:4670000
Cons ci ratio: 2.431013e-01	ci left: 4.891128e-05	ci right 6.264211e-05	k: 259	n:4670000
KS ci ratio: 2.139560e-03	ci left: 4.177502e-01	ci right 4.186452e-01	k: 1952983	n:4670000
GABBR2   4670000 perm   9500 sec   (492 perm/sec)   p_kst 4.181976e-01   p_cons 5.546039e-05   p_joint 6.907923e-04

Joint ci ratio: 6.886480e-02	ci left: 6.680503e-04	ci right 7.159043e-04	k: 3237	n:4680000
Cons ci ratio: 2.421716e-01	ci left: 4.920813e-05	ci right 6.296154e-05	k: 261	n:4680000
KS ci ratio: 2.137281e-03	ci left: 4.177488e-01	ci right 4.186428e-01	k: 1957156	n:4680000
GABBR2   4680000 perm   9538 sec   (491 perm/sec)   p_kst 4.181957e-01   p_cons 5.576923e-05   p_joint 6.916667e-04

Joint ci ratio: 6.877988e-02	ci left: 6.683023e-04	ci right 7.161130e-04	k: 3245	n:4690000
Cons ci ratio: 2.421716e-01	ci left: 4.910321e-05	ci right 6.282729e-05	k: 261	n:4690000
KS ci ratio: 2.134977e-03	ci left: 4.177548e-01	ci right 4.186479e-01	k: 1961364	n:4690000
GABBR2   4690000 perm   9576 sec   (490 perm/sec)   p_kst 4.182013e-01   p_cons 5.565032e-05   p_joint 6.918977e-04

Joint ci ratio: 6.869527e-02	ci left: 6.685532e-04	ci right 7.163207e-04	k: 3253	n:4700000
Cons ci ratio: 2.417108e-01	ci left: 4.919861e-05	ci right 6.291926e-05	k: 262	n:4700000
KS ci ratio: 2.132730e-03	ci left: 4.177495e-01	ci right 4.186416e-01	k: 1965519	n:4700000
GABBR2   4700000 perm   9614 sec   (489 perm/sec)   p_kst 4.181955e-01   p_cons 5.574468e-05   p_joint 6.921277e-04

Joint ci ratio: 6.864257e-02	ci left: 6.681771e-04	ci right 7.158796e-04	k: 3258	n:4710000
Cons ci ratio: 2.417108e-01	ci left: 4.909415e-05	ci right 6.278567e-05	k: 262	n:4710000
KS ci ratio: 2.130383e-03	ci left: 4.177685e-01	ci right 4.186596e-01	k: 1969788	n:4710000
GABBR2   4710000 perm   9655 sec   (488 perm/sec)   p_kst 4.182140e-01   p_cons 5.562633e-05   p_joint 6.917197e-04

Joint ci ratio: 6.854797e-02	ci left: 6.686356e-04	ci right 7.163024e-04	k: 3267	n:4720000
Cons ci ratio: 2.417108e-01	ci left: 4.899014e-05	ci right 6.265265e-05	k: 262	n:4720000
KS ci ratio: 2.128202e-03	ci left: 4.177516e-01	ci right 4.186418e-01	k: 1973888	n:4720000
GABBR2   4720000 perm   9697 sec   (487 perm/sec)   p_kst 4.181966e-01   p_cons 5.550847e-05   p_joint 6.921610e-04

Joint ci ratio: 6.848514e-02	ci left: 6.684687e-04	ci right 7.160783e-04	k: 3273	n:4730000
Cons ci ratio: 2.412526e-01	ci left: 4.908519e-05	ci right 6.274438e-05	k: 263	n:4730000
KS ci ratio: 2.125904e-03	ci left: 4.177628e-01	ci right 4.186521e-01	k: 1978121	n:4730000
GABBR2   4730000 perm   9736 sec   (486 perm/sec)   p_kst 4.182074e-01   p_cons 5.560254e-05   p_joint 6.919662e-04

Joint ci ratio: 6.844336e-02	ci left: 6.678879e-04	ci right 7.154259e-04	k: 3277	n:4740000
Cons ci ratio: 2.407969e-01	ci left: 4.917986e-05	ci right 6.283569e-05	k: 264	n:4740000
KS ci ratio: 2.123735e-03	ci left: 4.177460e-01	ci right 4.186343e-01	k: 1982221	n:4740000
GABBR2   4740000 perm   9775 sec   (485 perm/sec)   p_kst 4.181901e-01   p_cons 5.569620e-05   p_joint 6.913502e-04

Joint ci ratio: 6.834958e-02	ci left: 6.683442e-04	ci right 7.158469e-04	k: 3286	n:4750000
Cons ci ratio: 2.403439e-01	ci left: 4.927417e-05	ci right 6.292660e-05	k: 265	n:4750000
KS ci ratio: 2.121568e-03	ci left: 4.177305e-01	ci right 4.186178e-01	k: 1986327	n:4750000
GABBR2   4750000 perm   9815 sec   (484 perm/sec)   p_kst 4.181741e-01   p_cons 5.578947e-05   p_joint 6.917895e-04

Joint ci ratio: 6.829767e-02	ci left: 6.679725e-04	ci right 7.154113e-04	k: 3291	n:4760000
Cons ci ratio: 2.398934e-01	ci left: 4.936809e-05	ci right 6.301710e-05	k: 266	n:4760000
KS ci ratio: 2.119384e-03	ci left: 4.177205e-01	ci right 4.186069e-01	k: 1990459	n:4760000
GABBR2   4760000 perm   9854 sec   (483 perm/sec)   p_kst 4.181637e-01   p_cons 5.588235e-05   p_joint 6.913866e-04

Joint ci ratio: 6.817349e-02	ci left: 6.690450e-04	ci right 7.164702e-04	k: 3303	n:4770000
Cons ci ratio: 2.394454e-01	ci left: 4.946165e-05	ci right 6.310720e-05	k: 267	n:4770000
KS ci ratio: 2.117100e-03	ci left: 4.177351e-01	ci right 4.186206e-01	k: 1994708	n:4770000
GABBR2   4770000 perm   9894 sec   (482 perm/sec)   p_kst 4.181778e-01   p_cons 5.597484e-05   p_joint 6.924528e-04

Joint ci ratio: 6.812198e-02	ci left: 6.686735e-04	ci right 7.160351e-04	k: 3308	n:4780000
Cons ci ratio: 2.394454e-01	ci left: 4.935818e-05	ci right 6.297517e-05	k: 267	n:4780000
KS ci ratio: 2.114931e-03	ci left: 4.177249e-01	ci right 4.186095e-01	k: 1998839	n:4780000
GABBR2   4780000 perm   9933 sec   (481 perm/sec)   p_kst 4.181672e-01   p_cons 5.585774e-05   p_joint 6.920502e-04

Joint ci ratio: 6.821492e-02	ci left: 6.654306e-04	ci right 7.126294e-04	k: 3299	n:4790000
Cons ci ratio: 2.394454e-01	ci left: 4.925513e-05	ci right 6.284370e-05	k: 267	n:4790000
KS ci ratio: 2.112688e-03	ci left: 4.177332e-01	ci right 4.186168e-01	k: 2003058	n:4790000
GABBR2   4790000 perm   9972 sec   (480 perm/sec)   p_kst 4.181749e-01   p_cons 5.574113e-05   p_joint 6.887265e-04

Joint ci ratio: 6.814269e-02	ci left: 6.654778e-04	ci right 7.126279e-04	k: 3306	n:4800000
Cons ci ratio: 2.389999e-01	ci left: 4.934836e-05	ci right 6.293357e-05	k: 268	n:4800000
KS ci ratio: 2.110494e-03	ci left: 4.177318e-01	ci right 4.186145e-01	k: 2007231	n:4800000
GABBR2   4800000 perm   10012 sec   (479 perm/sec)   p_kst 4.181731e-01   p_cons 5.583333e-05   p_joint 6.887500e-04

Joint ci ratio: 6.916534e-02	ci left: 6.442738e-04	ci right 6.906342e-04	k: 3209	n:4810000
Cons ci ratio: 2.389999e-01	ci left: 4.924577e-05	ci right 6.280273e-05	k: 268	n:4810000
KS ci ratio: 2.108373e-03	ci left: 4.177151e-01	ci right 4.185969e-01	k: 2011330	n:4810000
GABBR2   4810000 perm   10051 sec   (479 perm/sec)   p_kst 4.181559e-01   p_cons 5.571726e-05   p_joint 6.671518e-04

Joint ci ratio: 7.609914e-02	ci left: 5.292660e-04	ci right 5.713377e-04	k: 2651	n:4820000
Cons ci ratio: 2.381163e-01	ci left: 4.953374e-05	ci right 6.311213e-05	k: 270	n:4820000
KS ci ratio: 2.106218e-03	ci left: 4.177079e-01	ci right 4.185888e-01	k: 2015475	n:4820000
GABBR2   4820000 perm   10091 sec   (478 perm/sec)   p_kst 4.181483e-01   p_cons 5.601660e-05   p_joint 5.500000e-04

Joint ci ratio: 7.595603e-02	ci left: 5.302013e-04	ci right 5.722646e-04	k: 2661	n:4830000
Cons ci ratio: 2.372425e-01	ci left: 4.982061e-05	ci right 6.342015e-05	k: 272	n:4830000
KS ci ratio: 2.104058e-03	ci left: 4.177035e-01	ci right 4.185835e-01	k: 2019633	n:4830000
GABBR2   4830000 perm   10130 sec   (477 perm/sec)   p_kst 4.181435e-01   p_cons 5.631470e-05   p_joint 5.509317e-04

Joint ci ratio: 7.588481e-02	ci left: 5.301193e-04	ci right 5.721349e-04	k: 2666	n:4840000
Cons ci ratio: 2.372425e-01	ci left: 4.971767e-05	ci right 6.328912e-05	k: 272	n:4840000
KS ci ratio: 2.101782e-03	ci left: 4.177274e-01	ci right 4.186065e-01	k: 2023928	n:4840000
GABBR2   4840000 perm   10170 sec   (476 perm/sec)   p_kst 4.181669e-01   p_cons 5.619835e-05   p_joint 5.508264e-04

Joint ci ratio: 7.574290e-02	ci left: 5.310490e-04	ci right 5.730561e-04	k: 2676	n:4850000
Cons ci ratio: 2.368091e-01	ci left: 4.980910e-05	ci right 6.337703e-05	k: 273	n:4850000
KS ci ratio: 2.099607e-03	ci left: 4.177294e-01	ci right 4.186076e-01	k: 2028117	n:4850000
GABBR2   4850000 perm   10209 sec   (475 perm/sec)   p_kst 4.181685e-01   p_cons 5.628866e-05   p_joint 5.517526e-04

Joint ci ratio: 7.561587e-02	ci left: 5.317731e-04	ci right 5.737639e-04	k: 2685	n:4860000
Cons ci ratio: 2.368092e-01	ci left: 4.970661e-05	ci right 6.324663e-05	k: 273	n:4860000
KS ci ratio: 2.097468e-03	ci left: 4.177248e-01	ci right 4.186021e-01	k: 2032274	n:4860000
GABBR2   4860000 perm   10249 sec   (474 perm/sec)   p_kst 4.181634e-01   p_cons 5.617284e-05   p_joint 5.524691e-04

Joint ci ratio: 7.553156e-02	ci left: 5.318900e-04	ci right 5.738410e-04	k: 2691	n:4870000
Cons ci ratio: 2.363782e-01	ci left: 4.979771e-05	ci right 6.333425e-05	k: 274	n:4870000
KS ci ratio: 2.095309e-03	ci left: 4.177261e-01	ci right 4.186025e-01	k: 2036460	n:4870000
GABBR2   4870000 perm   10289 sec   (473 perm/sec)   p_kst 4.181643e-01   p_cons 5.626283e-05   p_joint 5.525667e-04

Joint ci ratio: 7.537767e-02	ci left: 5.330116e-04	ci right 5.749617e-04	k: 2702	n:4880000
Cons ci ratio: 2.359496e-01	ci left: 4.988846e-05	ci right 6.342148e-05	k: 275	n:4880000
KS ci ratio: 2.093193e-03	ci left: 4.177193e-01	ci right 4.185948e-01	k: 2040606	n:4880000
GABBR2   4880000 perm   10330 sec   (472 perm/sec)   p_kst 4.181570e-01   p_cons 5.635246e-05   p_joint 5.536885e-04

Joint ci ratio: 7.529414e-02	ci left: 5.331255e-04	ci right 5.750360e-04	k: 2708	n:4890000
Cons ci ratio: 2.359496e-01	ci left: 4.978644e-05	ci right 6.329179e-05	k: 275	n:4890000
KS ci ratio: 2.091026e-03	ci left: 4.177257e-01	ci right 4.186003e-01	k: 2044817	n:4890000
GABBR2   4890000 perm   10370 sec   (472 perm/sec)   p_kst 4.181630e-01   p_cons 5.623722e-05   p_joint 5.537832e-04

Joint ci ratio: 7.525251e-02	ci left: 5.326382e-04	ci right 5.744863e-04	k: 2711	n:4900000
Cons ci ratio: 2.359496e-01	ci left: 4.968484e-05	ci right 6.316262e-05	k: 275	n:4900000
KS ci ratio: 2.088929e-03	ci left: 4.177173e-01	ci right 4.185910e-01	k: 2048955	n:4900000
GABBR2   4900000 perm   10411 sec   (471 perm/sec)   p_kst 4.181541e-01   p_cons 5.612245e-05   p_joint 5.532653e-04

Joint ci ratio: 7.519708e-02	ci left: 5.323527e-04	ci right 5.741462e-04	k: 2715	n:4910000
Cons ci ratio: 2.355233e-01	ci left: 4.977528e-05	ci right 6.324965e-05	k: 276	n:4910000
KS ci ratio: 2.086775e-03	ci left: 4.177237e-01	ci right 4.185965e-01	k: 2053166	n:4910000
GABBR2   4910000 perm   10451 sec   (470 perm/sec)   p_kst 4.181601e-01   p_cons 5.621181e-05   p_joint 5.529532e-04

Joint ci ratio: 7.514178e-02	ci left: 5.320684e-04	ci right 5.738076e-04	k: 2719	n:4920000
Cons ci ratio: 2.350993e-01	ci left: 4.986538e-05	ci right 6.333631e-05	k: 277	n:4920000
KS ci ratio: 2.084582e-03	ci left: 4.177407e-01	ci right 4.186126e-01	k: 2057429	n:4920000
GABBR2   4920000 perm   10492 sec   (469 perm/sec)   p_kst 4.181766e-01   p_cons 5.630081e-05   p_joint 5.526423e-04

Joint ci ratio: 7.508660e-02	ci left: 5.317853e-04	ci right 5.734702e-04	k: 2723	n:4930000
Cons ci ratio: 2.350993e-01	ci left: 4.976424e-05	ci right 6.320784e-05	k: 277	n:4930000
KS ci ratio: 2.082458e-03	ci left: 4.177432e-01	ci right 4.186143e-01	k: 2061621	n:4930000
GABBR2   4930000 perm   10539 sec   (468 perm/sec)   p_kst 4.181787e-01   p_cons 5.618661e-05   p_joint 5.523327e-04

Joint ci ratio: 7.496284e-02	ci left: 5.324965e-04	ci right 5.741654e-04	k: 2732	n:4940000
Cons ci ratio: 2.346776e-01	ci left: 4.985402e-05	ci right 6.329421e-05	k: 278	n:4940000
KS ci ratio: 2.080293e-03	ci left: 4.177569e-01	ci right 4.186270e-01	k: 2065868	n:4940000
GABBR2   4940000 perm   10580 sec   (467 perm/sec)   p_kst 4.181919e-01   p_cons 5.627530e-05   p_joint 5.530364e-04

Joint ci ratio: 7.488069e-02	ci left: 5.326102e-04	ci right 5.742403e-04	k: 2738	n:4950000
Cons ci ratio: 2.342582e-01	ci left: 4.994346e-05	ci right 6.338020e-05	k: 279	n:4950000
KS ci ratio: 2.078194e-03	ci left: 4.177565e-01	ci right 4.186258e-01	k: 2070046	n:4950000
GABBR2   4950000 perm   10622 sec   (466 perm/sec)   p_kst 4.181911e-01   p_cons 5.636364e-05   p_joint 5.531313e-04

Joint ci ratio: 7.482608e-02	ci left: 5.323277e-04	ci right 5.739041e-04	k: 2742	n:4960000
Cons ci ratio: 2.342582e-01	ci left: 4.984276e-05	ci right 6.325242e-05	k: 279	n:4960000
KS ci ratio: 2.076115e-03	ci left: 4.177529e-01	ci right 4.186213e-01	k: 2074208	n:4960000
GABBR2   4960000 perm   10663 sec   (465 perm/sec)   p_kst 4.181871e-01   p_cons 5.625000e-05   p_joint 5.528226e-04

Joint ci ratio: 7.469002e-02	ci left: 5.332311e-04	ci right 5.747990e-04	k: 2752	n:4970000
Cons ci ratio: 2.338410e-01	ci left: 4.993189e-05	ci right 6.333814e-05	k: 280	n:4970000
KS ci ratio: 2.074096e-03	ci left: 4.177369e-01	ci right 4.186044e-01	k: 2078308	n:4970000
GABBR2   4970000 perm   10704 sec   (464 perm/sec)   p_kst 4.181706e-01   p_cons 5.633803e-05   p_joint 5.537223e-04

Joint ci ratio: 7.492188e-02	ci left: 5.288105e-04	ci right 5.701674e-04	k: 2735	n:4980000
Cons ci ratio: 2.338410e-01	ci left: 4.983162e-05	ci right 6.321095e-05	k: 280	n:4980000
KS ci ratio: 2.072022e-03	ci left: 4.177350e-01	ci right 4.186016e-01	k: 2082478	n:4980000
GABBR2   4980000 perm   10744 sec   (464 perm/sec)   p_kst 4.181683e-01   p_cons 5.622490e-05   p_joint 5.491968e-04

Joint ci ratio: 7.488085e-02	ci left: 5.283407e-04	ci right 5.696372e-04	k: 2738	n:4990000
Cons ci ratio: 2.338410e-01	ci left: 4.973176e-05	ci right 6.308428e-05	k: 280	n:4990000
KS ci ratio: 2.069949e-03	ci left: 4.177345e-01	ci right 4.186003e-01	k: 2086655	n:4990000
GABBR2   4990000 perm   10785 sec   (463 perm/sec)   p_kst 4.181673e-01   p_cons 5.611222e-05   p_joint 5.486974e-04

Joint ci ratio: 8.544207e-02	ci left: 4.028175e-04	ci right 4.389651e-04	k: 2103	n:5000000
Cons ci ratio: 2.692210e-01	ci left: 3.669780e-05	ci right 4.829436e-05	k: 211	n:5000000
KS ci ratio: 2.067815e-03	ci left: 4.177498e-01	ci right 4.186147e-01	k: 2090911	n:5000000
GABBR2   5000000 perm   10826 sec   (462 perm/sec)   p_kst 4.181822e-01   p_cons 4.220000e-05   p_joint 4.206000e-04

Outputting figure to mutsig2_images.part000000000068/GABBR2.7_2902_5000000_0.41818_4.22e-05_0.0004206.png
                gene_name: GABBR2
               theta_stop: 0.27 
                    nperm: 5000000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.42 
                   p_cons: 4.22e-05 
      ci_cons_bounds_left: 3.67e-05 
     ci_cons_bounds_right: 4.83e-05 
                  p_joint: 0.00042 
     ci_joint_bounds_left: 0.00040 
    ci_joint_bounds_right: 0.00044 

Current progress: 22 percent done.
GABRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.834130e-02	ci left: 5.011505e-01	ci right 5.208430e-01	k: 5110	n:10000
Cons ci ratio: 4.588733e-02	ci left: 4.120947e-01	ci right 4.315508e-01	k: 4218	n:10000
KS ci ratio: 4.939873e-02	ci left: 3.767412e-01	ci right 3.959251e-01	k: 3863	n:10000
GABRB1   10000 perm   2 sec   (4305 perm/sec)   p_kst 3.863000e-01   p_cons 4.218000e-01   p_joint 5.110000e-01

Outputting figure to mutsig2_images.part000000000068/GABRB1.7_1461_10000_0.3863_0.4218_0.511.png
                gene_name: GABRB1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 24 percent done.
GABRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.618316e-02	ci left: 2.510282e-01	ci right 2.683120e-01	k: 2596	n:10000
Cons ci ratio: 1.003429e-01	ci left: 1.257171e-01	ci right 1.390978e-01	k: 1323	n:10000
KS ci ratio: 5.554127e-02	ci left: 3.231670e-01	ci right 3.417307e-01	k: 3324	n:10000
GABRB2   10000 perm   2 sec   (5196 perm/sec)   p_kst 3.324000e-01   p_cons 1.323000e-01   p_joint 2.596000e-01

Joint ci ratio: 4.859927e-02	ci left: 2.394485e-01	ci right 2.514256e-01	k: 4908	n:20000
Cons ci ratio: 7.084650e-02	ci left: 1.280270e-01	ci right 1.374801e-01	k: 2654	n:20000
KS ci ratio: 4.006993e-02	ci left: 3.171171e-01	ci right 3.301342e-01	k: 6472	n:20000
GABRB2   20000 perm   5 sec   (3952 perm/sec)   p_kst 3.236000e-01   p_cons 1.327000e-01   p_joint 2.454000e-01

Outputting figure to mutsig2_images.part000000000068/GABRB2.7_1579_20000_0.3236_0.1327_0.2454.png
                gene_name: GABRB2
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 25 percent done.
FZD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
Cons ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
KS ci ratio: 2.931451e-02	ci left: 6.318096e-01	ci right 6.507081e-01	k: 6413	n:10000
FZD10   10000 perm   2 sec   (5412 perm/sec)   p_kst 6.413000e-01   p_cons 1.700000e-03   p_joint 1.130000e-02

Joint ci ratio: 1.970633e-01	ci left: 1.748601e-02	ci right 2.135550e-02	k: 387	n:20000
Cons ci ratio: 5.772931e-01	ci left: 1.641624e-03	ci right 3.009532e-03	k: 45	n:20000
KS ci ratio: 2.079703e-02	ci left: 6.331019e-01	ci right 6.464574e-01	k: 12796	n:20000
FZD10   20000 perm   4 sec   (4903 perm/sec)   p_kst 6.398000e-01   p_cons 2.250000e-03   p_joint 1.935000e-02

Joint ci ratio: 2.008844e-01	ci left: 1.127349e-02	ci right 1.382221e-02	k: 375	n:30000
Cons ci ratio: 4.520690e-01	ci left: 1.937345e-03	ci right 3.095698e-03	k: 74	n:30000
KS ci ratio: 1.708179e-02	ci left: 6.315958e-01	ci right 6.425110e-01	k: 19112	n:30000
FZD10   30000 perm   6 sec   (4684 perm/sec)   p_kst 6.370667e-01   p_cons 2.466667e-03   p_joint 1.250000e-02

Joint ci ratio: 1.845774e-01	ci left: 1.012024e-02	ci right 1.220164e-02	k: 445	n:40000
Cons ci ratio: 3.915048e-01	ci left: 2.011999e-03	ci right 3.012412e-03	k: 99	n:40000
KS ci ratio: 1.481711e-02	ci left: 6.315885e-01	ci right 6.410417e-01	k: 25453	n:40000
FZD10   40000 perm   9 sec   (4559 perm/sec)   p_kst 6.363250e-01   p_cons 2.475000e-03   p_joint 1.112500e-02

Joint ci ratio: 1.843692e-01	ci left: 8.133555e-03	ci right 9.804203e-03	k: 447	n:50000
Cons ci ratio: 3.530160e-01	ci left: 2.026672e-03	ci right 2.912674e-03	k: 122	n:50000
KS ci ratio: 1.324158e-02	ci left: 6.324866e-01	ci right 6.409376e-01	k: 31836	n:50000
FZD10   50000 perm   11 sec   (4460 perm/sec)   p_kst 6.367200e-01   p_cons 2.440000e-03   p_joint 8.940000e-03

Joint ci ratio: 1.459291e-01	ci left: 1.101555e-02	ci right 1.276547e-02	k: 712	n:60000
Cons ci ratio: 3.218217e-01	ci left: 2.070336e-03	ci right 2.878991e-03	k: 147	n:60000
KS ci ratio: 1.210278e-02	ci left: 6.322856e-01	ci right 6.400013e-01	k: 38169	n:60000
FZD10   60000 perm   14 sec   (4375 perm/sec)   p_kst 6.361500e-01   p_cons 2.450000e-03   p_joint 1.186667e-02

Joint ci ratio: 1.375371e-01	ci left: 1.068192e-02	ci right 1.227325e-02	k: 802	n:70000
Cons ci ratio: 3.011721e-01	ci left: 2.051143e-03	ci right 2.791068e-03	k: 168	n:70000
KS ci ratio: 1.117617e-02	ci left: 6.337686e-01	ci right 6.409058e-01	k: 44614	n:70000
FZD10   70000 perm   16 sec   (4292 perm/sec)   p_kst 6.373429e-01   p_cons 2.400000e-03   p_joint 1.145714e-02

Joint ci ratio: 1.078758e-01	ci left: 1.536085e-02	ci right 1.712448e-02	k: 1298	n:80000
Cons ci ratio: 2.761462e-01	ci left: 2.165860e-03	ci right 2.870991e-03	k: 200	n:80000
KS ci ratio: 1.059484e-02	ci left: 6.277956e-01	ci right 6.344949e-01	k: 50492	n:80000
FZD10   80000 perm   19 sec   (4210 perm/sec)   p_kst 6.311500e-01   p_cons 2.500000e-03   p_joint 1.622500e-02

Joint ci ratio: 1.033125e-01	ci left: 1.493041e-02	ci right 1.656769e-02	k: 1416	n:90000
Cons ci ratio: 2.526959e-01	ci left: 2.329897e-03	ci right 3.013897e-03	k: 239	n:90000
KS ci ratio: 9.992623e-03	ci left: 6.278155e-01	ci right 6.341316e-01	k: 56788	n:90000
FZD10   90000 perm   22 sec   (4138 perm/sec)   p_kst 6.309778e-01   p_cons 2.655556e-03   p_joint 1.573333e-02

Joint ci ratio: 1.152828e-01	ci left: 1.077065e-02	ci right 1.209791e-02	k: 1142	n:100000
Cons ci ratio: 2.352024e-01	ci left: 2.444333e-03	ci right 3.105032e-03	k: 276	n:100000
KS ci ratio: 9.481835e-03	ci left: 6.278803e-01	ci right 6.338721e-01	k: 63088	n:100000
FZD10   100000 perm   25 sec   (4028 perm/sec)   p_kst 6.308800e-01   p_cons 2.760000e-03   p_joint 1.142000e-02

Joint ci ratio: 8.341396e-02	ci left: 1.886019e-02	ci right 2.051072e-02	k: 2164	n:110000
Cons ci ratio: 2.241461e-01	ci left: 2.462030e-03	ci right 3.091913e-03	k: 304	n:110000
KS ci ratio: 9.045842e-03	ci left: 6.277490e-01	ci right 6.334623e-01	k: 69367	n:110000
FZD10   110000 perm   28 sec   (3963 perm/sec)   p_kst 6.306091e-01   p_cons 2.763636e-03   p_joint 1.967273e-02

Joint ci ratio: 7.676729e-02	ci left: 2.044963e-02	ci right 2.209029e-02	k: 2551	n:120000
Cons ci ratio: 2.145155e-01	ci left: 2.477383e-03	ci right 3.080378e-03	k: 332	n:120000
KS ci ratio: 8.663698e-03	ci left: 6.277117e-01	ci right 6.331820e-01	k: 75654	n:120000
FZD10   120000 perm   31 sec   (3905 perm/sec)   p_kst 6.304500e-01   p_cons 2.766667e-03   p_joint 2.125833e-02

Joint ci ratio: 7.070203e-02	ci left: 2.228265e-02	ci right 2.392333e-02	k: 3002	n:130000
Cons ci ratio: 2.043325e-01	ci left: 2.534652e-03	ci right 3.118645e-03	k: 366	n:130000
KS ci ratio: 8.328146e-03	ci left: 6.275768e-01	ci right 6.328328e-01	k: 81927	n:130000
FZD10   130000 perm   34 sec   (3845 perm/sec)   p_kst 6.302077e-01   p_cons 2.815385e-03   p_joint 2.309231e-02

Joint ci ratio: 6.595987e-02	ci left: 2.379487e-02	ci right 2.542490e-02	k: 3444	n:140000
Cons ci ratio: 1.962117e-01	ci left: 2.563937e-03	ci right 3.128395e-03	k: 397	n:140000
KS ci ratio: 8.022756e-03	ci left: 6.278152e-01	ci right 6.328794e-01	k: 88249	n:140000
FZD10   140000 perm   37 sec   (3781 perm/sec)   p_kst 6.303500e-01   p_cons 2.835714e-03   p_joint 2.460000e-02

Joint ci ratio: 6.481234e-02	ci left: 2.303452e-02	ci right 2.458397e-02	k: 3570	n:150000
Cons ci ratio: 1.896541e-01	ci left: 2.570661e-03	ci right 3.115505e-03	k: 425	n:150000
KS ci ratio: 7.753883e-03	ci left: 6.277111e-01	ci right 6.326039e-01	k: 94524	n:150000
FZD10   150000 perm   40 sec   (3721 perm/sec)   p_kst 6.301600e-01   p_cons 2.833333e-03   p_joint 2.380000e-02

Joint ci ratio: 7.832770e-02	ci left: 1.480843e-02	ci right 1.602172e-02	k: 2465	n:160000
Cons ci ratio: 2.111243e-01	ci left: 1.923064e-03	ci right 2.382775e-03	k: 343	n:160000
KS ci ratio: 7.506923e-03	ci left: 6.278354e-01	ci right 6.325724e-01	k: 100833	n:160000
FZD10   160000 perm   44 sec   (3660 perm/sec)   p_kst 6.302062e-01   p_cons 2.143750e-03   p_joint 1.540625e-02

Joint ci ratio: 7.941605e-02	ci left: 1.356796e-02	ci right 1.469576e-02	k: 2401	n:170000
Cons ci ratio: 2.035686e-01	ci left: 1.954948e-03	ci right 2.403477e-03	k: 369	n:170000
KS ci ratio: 7.284356e-03	ci left: 6.278058e-01	ci right 6.324015e-01	k: 107118	n:170000
FZD10   170000 perm   47 sec   (3608 perm/sec)   p_kst 6.301059e-01   p_cons 2.170588e-03   p_joint 1.412353e-02

Joint ci ratio: 7.837970e-02	ci left: 1.316806e-02	ci right 1.424768e-02	k: 2466	n:180000
Cons ci ratio: 1.982812e-01	ci left: 1.951861e-03	ci right 2.386644e-03	k: 389	n:180000
KS ci ratio: 7.074742e-03	ci left: 6.281597e-01	ci right 6.326250e-01	k: 113471	n:180000
FZD10   180000 perm   51 sec   (3556 perm/sec)   p_kst 6.303944e-01   p_cons 2.161111e-03   p_joint 1.370000e-02

Joint ci ratio: 7.920919e-02	ci left: 1.222196e-02	ci right 1.323510e-02	k: 2417	n:190000
Cons ci ratio: 1.938599e-01	ci left: 1.939217e-03	ci right 2.360415e-03	k: 407	n:190000
KS ci ratio: 6.877960e-03	ci left: 6.287677e-01	ci right 6.331125e-01	k: 119879	n:190000
FZD10   190000 perm   54 sec   (3506 perm/sec)   p_kst 6.309421e-01   p_cons 2.142105e-03   p_joint 1.272105e-02

Joint ci ratio: 7.516955e-02	ci left: 1.291046e-02	ci right 1.392371e-02	k: 2682	n:200000
Cons ci ratio: 1.899453e-01	ci left: 1.923171e-03	ci right 2.331475e-03	k: 424	n:200000
KS ci ratio: 6.703838e-03	ci left: 6.288208e-01	ci right 6.330554e-01	k: 126188	n:200000
FZD10   200000 perm   58 sec   (3434 perm/sec)   p_kst 6.309400e-01   p_cons 2.120000e-03   p_joint 1.341000e-02

Joint ci ratio: 7.313659e-02	ci left: 1.300141e-02	ci right 1.399303e-02	k: 2833	n:210000
Cons ci ratio: 1.856284e-01	ci left: 1.922352e-03	ci right 2.320162e-03	k: 444	n:210000
KS ci ratio: 6.541702e-03	ci left: 6.289130e-01	ci right 6.330453e-01	k: 132506	n:210000
FZD10   210000 perm   62 sec   (3392 perm/sec)   p_kst 6.309810e-01   p_cons 2.114286e-03   p_joint 1.349048e-02

Joint ci ratio: 7.326416e-02	ci left: 1.237460e-02	ci right 1.332012e-02	k: 2825	n:220000
Cons ci ratio: 1.812029e-01	ci left: 1.930382e-03	ci right 2.319286e-03	k: 466	n:220000
KS ci ratio: 6.396466e-03	ci left: 6.285838e-01	ci right 6.326219e-01	k: 138733	n:220000
FZD10   220000 perm   67 sec   (3283 perm/sec)   p_kst 6.306045e-01   p_cons 2.118182e-03   p_joint 1.284091e-02

Joint ci ratio: 7.032098e-02	ci left: 1.286143e-02	ci right 1.380307e-02	k: 3065	n:230000
Cons ci ratio: 1.770796e-01	ci left: 1.937817e-03	ci right 2.318383e-03	k: 488	n:230000
KS ci ratio: 6.254178e-03	ci left: 6.287543e-01	ci right 6.327033e-01	k: 145068	n:230000
FZD10   230000 perm   72 sec   (3211 perm/sec)   p_kst 6.307304e-01   p_cons 2.121739e-03   p_joint 1.332609e-02

Joint ci ratio: 7.001764e-02	ci left: 1.244006e-02	ci right 1.334676e-02	k: 3093	n:240000
Cons ci ratio: 1.725500e-01	ci left: 1.960670e-03	ci right 2.334850e-03	k: 514	n:240000
KS ci ratio: 6.123171e-03	ci left: 6.287447e-01	ci right 6.326105e-01	k: 151363	n:240000
FZD10   240000 perm   76 sec   (3158 perm/sec)   p_kst 6.306792e-01   p_cons 2.141667e-03   p_joint 1.288750e-02

Joint ci ratio: 5.986069e-02	ci left: 1.635893e-02	ci right 1.737232e-02	k: 4215	n:250000
Cons ci ratio: 1.678853e-01	ci left: 1.993305e-03	ci right 2.362389e-03	k: 543	n:250000
KS ci ratio: 6.001715e-03	ci left: 6.286085e-01	ci right 6.323965e-01	k: 157626	n:250000
FZD10   250000 perm   80 sec   (3127 perm/sec)   p_kst 6.305040e-01   p_cons 2.172000e-03   p_joint 1.686000e-02

Joint ci ratio: 5.923393e-02	ci left: 1.607446e-02	ci right 1.705944e-02	k: 4306	n:260000
Cons ci ratio: 1.638663e-01	ci left: 2.016177e-03	ci right 2.379678e-03	k: 570	n:260000
KS ci ratio: 5.886189e-03	ci left: 6.285643e-01	ci right 6.322789e-01	k: 163910	n:260000
FZD10   260000 perm   84 sec   (3083 perm/sec)   p_kst 6.304231e-01   p_cons 2.192308e-03   p_joint 1.656154e-02

Joint ci ratio: 5.931542e-02	ci left: 1.544612e-02	ci right 1.639394e-02	k: 4297	n:270000
Cons ci ratio: 1.617576e-01	ci left: 1.994794e-03	ci right 2.349361e-03	k: 585	n:270000
KS ci ratio: 5.777775e-03	ci left: 6.284685e-01	ci right 6.321139e-01	k: 170179	n:270000
FZD10   270000 perm   88 sec   (3053 perm/sec)   p_kst 6.302926e-01   p_cons 2.166667e-03   p_joint 1.591481e-02

Joint ci ratio: 6.306523e-02	ci left: 1.318128e-02	ci right 1.404312e-02	k: 3810	n:280000
Cons ci ratio: 1.588040e-01	ci left: 1.998971e-03	ci right 2.347176e-03	k: 607	n:280000
KS ci ratio: 5.707709e-03	ci left: 6.257061e-01	ci right 6.292912e-01	k: 175700	n:280000
FZD10   280000 perm   93 sec   (3023 perm/sec)   p_kst 6.275000e-01   p_cons 2.167857e-03   p_joint 1.360714e-02

Joint ci ratio: 6.159846e-02	ci left: 1.334799e-02	ci right 1.419970e-02	k: 3993	n:290000
Cons ci ratio: 1.560065e-01	ci left: 2.002916e-03	ci right 2.345086e-03	k: 629	n:290000
KS ci ratio: 5.609348e-03	ci left: 6.256615e-01	ci right 6.291843e-01	k: 181953	n:290000
FZD10   290000 perm   97 sec   (2984 perm/sec)   p_kst 6.274241e-01   p_cons 2.168966e-03   p_joint 1.376897e-02

Joint ci ratio: 6.071023e-02	ci left: 1.329036e-02	ci right 1.412574e-02	k: 4111	n:300000
Cons ci ratio: 1.535881e-01	ci left: 2.000236e-03	ci right 2.336164e-03	k: 649	n:300000
KS ci ratio: 5.511892e-03	ci left: 6.259606e-01	ci right 6.294236e-01	k: 188308	n:300000
FZD10   300000 perm   102 sec   (2952 perm/sec)   p_kst 6.276933e-01   p_cons 2.163333e-03   p_joint 1.370333e-02

Joint ci ratio: 6.119307e-02	ci left: 1.266456e-02	ci right 1.346716e-02	k: 4049	n:310000
Cons ci ratio: 1.513921e-01	ci left: 1.994663e-03	ci right 2.324431e-03	k: 668	n:310000
KS ci ratio: 5.423083e-03	ci left: 6.259180e-01	ci right 6.293248e-01	k: 194563	n:310000
FZD10   310000 perm   106 sec   (2921 perm/sec)   p_kst 6.276226e-01   p_cons 2.154839e-03   p_joint 1.306129e-02

Joint ci ratio: 6.037323e-02	ci left: 1.261039e-02	ci right 1.339847e-02	k: 4160	n:320000
Cons ci ratio: 1.496149e-01	ci left: 1.980446e-03	ci right 2.303676e-03	k: 684	n:320000
KS ci ratio: 5.340253e-03	ci left: 6.257190e-01	ci right 6.290725e-01	k: 200767	n:320000
FZD10   320000 perm   111 sec   (2892 perm/sec)   p_kst 6.273969e-01   p_cons 2.137500e-03   p_joint 1.300000e-02

Joint ci ratio: 5.978428e-02	ci left: 1.247596e-02	ci right 1.324778e-02	k: 4243	n:330000
Cons ci ratio: 1.477932e-01	ci left: 1.970030e-03	ci right 2.287299e-03	k: 701	n:330000
KS ci ratio: 5.261410e-03	ci left: 6.255051e-01	ci right 6.288078e-01	k: 206962	n:330000
FZD10   330000 perm   115 sec   (2861 perm/sec)   p_kst 6.271576e-01   p_cons 2.124242e-03   p_joint 1.285758e-02

Joint ci ratio: 5.873956e-02	ci left: 1.254947e-02	ci right 1.331181e-02	k: 4395	n:340000
Cons ci ratio: 1.452290e-01	ci left: 1.982923e-03	ci right 2.296247e-03	k: 726	n:340000
KS ci ratio: 5.179958e-03	ci left: 6.258459e-01	ci right 6.290990e-01	k: 213341	n:340000
FZD10   340000 perm   120 sec   (2834 perm/sec)   p_kst 6.274735e-01   p_cons 2.135294e-03   p_joint 1.292647e-02

Joint ci ratio: 5.748579e-02	ci left: 1.273436e-02	ci right 1.349087e-02	k: 4588	n:350000
Cons ci ratio: 1.436579e-01	ci left: 1.970329e-03	ci right 2.278007e-03	k: 742	n:350000
KS ci ratio: 5.104541e-03	ci left: 6.259501e-01	ci right 6.291563e-01	k: 219644	n:350000
FZD10   350000 perm   125 sec   (2806 perm/sec)   p_kst 6.275543e-01   p_cons 2.120000e-03   p_joint 1.310857e-02

Joint ci ratio: 5.597763e-02	ci left: 1.306255e-02	ci right 1.381754e-02	k: 4837	n:360000
Cons ci ratio: 1.417629e-01	ci left: 1.969170e-03	ci right 2.272267e-03	k: 762	n:360000
KS ci ratio: 5.033371e-03	ci left: 6.259516e-01	ci right 6.291130e-01	k: 225912	n:360000
FZD10   360000 perm   130 sec   (2770 perm/sec)   p_kst 6.275333e-01   p_cons 2.116667e-03   p_joint 1.343611e-02

Joint ci ratio: 5.280008e-02	ci left: 1.429066e-02	ci right 1.506832e-02	k: 5430	n:370000
Cons ci ratio: 1.404813e-01	ci left: 1.952450e-03	ci right 2.250029e-03	k: 776	n:370000
KS ci ratio: 4.961855e-03	ci left: 6.262590e-01	ci right 6.293768e-01	k: 232293	n:370000
FZD10   370000 perm   135 sec   (2741 perm/sec)   p_kst 6.278189e-01   p_cons 2.097297e-03   p_joint 1.467568e-02

Joint ci ratio: 4.674699e-02	ci left: 1.774353e-02	ci right 1.859542e-02	k: 6903	n:380000
Cons ci ratio: 1.385336e-01	ci left: 1.956944e-03	ci right 2.250731e-03	k: 798	n:380000
KS ci ratio: 4.895448e-03	ci left: 6.263451e-01	ci right 6.294214e-01	k: 238596	n:380000
FZD10   380000 perm   140 sec   (2714 perm/sec)   p_kst 6.278842e-01   p_cons 2.100000e-03   p_joint 1.816579e-02

Joint ci ratio: 4.710306e-02	ci left: 1.703755e-02	ci right 1.786195e-02	k: 6804	n:390000
Cons ci ratio: 1.371679e-01	ci left: 1.946376e-03	ci right 2.235461e-03	k: 814	n:390000
KS ci ratio: 4.831028e-03	ci left: 6.264860e-01	ci right 6.295224e-01	k: 244922	n:390000
FZD10   390000 perm   146 sec   (2678 perm/sec)   p_kst 6.280051e-01   p_cons 2.087179e-03   p_joint 1.744615e-02

Joint ci ratio: 4.644113e-02	ci left: 1.709342e-02	ci right 1.790859e-02	k: 6999	n:400000
Cons ci ratio: 1.350301e-01	ci left: 1.960504e-03	ci right 2.246785e-03	k: 840	n:400000
KS ci ratio: 4.768346e-03	ci left: 6.266926e-01	ci right 6.296905e-01	k: 251277	n:400000
FZD10   400000 perm   151 sec   (2652 perm/sec)   p_kst 6.281925e-01   p_cons 2.100000e-03   p_joint 1.749750e-02

Joint ci ratio: 4.634692e-02	ci left: 1.675117e-02	ci right 1.754835e-02	k: 7030	n:410000
Cons ci ratio: 1.339212e-01	ci left: 1.945683e-03	ci right 2.227281e-03	k: 854	n:410000
KS ci ratio: 4.708949e-03	ci left: 6.267991e-01	ci right 6.297600e-01	k: 257595	n:410000
FZD10   410000 perm   157 sec   (2618 perm/sec)   p_kst 6.282805e-01   p_cons 2.082927e-03   p_joint 1.714634e-02

Joint ci ratio: 4.751406e-02	ci left: 1.556856e-02	ci right 1.632862e-02	k: 6697	n:420000
Cons ci ratio: 1.320797e-01	ci left: 1.954600e-03	ci right 2.233293e-03	k: 878	n:420000
KS ci ratio: 4.652714e-03	ci left: 6.268007e-01	ci right 6.297261e-01	k: 263871	n:420000
FZD10   420000 perm   162 sec   (2595 perm/sec)   p_kst 6.282643e-01   p_cons 2.090476e-03   p_joint 1.594524e-02

Joint ci ratio: 4.709275e-02	ci left: 1.548455e-02	ci right 1.623362e-02	k: 6818	n:430000
Cons ci ratio: 1.310414e-01	ci left: 1.940630e-03	ci right 2.214986e-03	k: 892	n:430000
KS ci ratio: 4.599477e-03	ci left: 6.266976e-01	ci right 6.295890e-01	k: 270102	n:430000
FZD10   430000 perm   168 sec   (2563 perm/sec)   p_kst 6.281442e-01   p_cons 2.074419e-03   p_joint 1.585581e-02

Joint ci ratio: 4.507282e-02	ci left: 1.651894e-02	ci right 1.728289e-02	k: 7435	n:440000
Cons ci ratio: 1.291736e-01	ci left: 1.953693e-03	ci right 2.225658e-03	k: 918	n:440000
KS ci ratio: 4.547053e-03	ci left: 6.266995e-01	ci right 6.295579e-01	k: 276377	n:440000
FZD10   440000 perm   173 sec   (2541 perm/sec)   p_kst 6.281295e-01   p_cons 2.086364e-03   p_joint 1.689773e-02

Joint ci ratio: 4.505372e-02	ci left: 1.617156e-02	ci right 1.691913e-02	k: 7444	n:450000
Cons ci ratio: 1.274511e-01	ci left: 1.964050e-03	ci right 2.233536e-03	k: 943	n:450000
KS ci ratio: 4.498649e-03	ci left: 6.264658e-01	ci right 6.292926e-01	k: 282546	n:450000
FZD10   450000 perm   179 sec   (2518 perm/sec)   p_kst 6.278800e-01   p_cons 2.095556e-03   p_joint 1.654222e-02

Joint ci ratio: 4.454478e-02	ci left: 1.618758e-02	ci right 1.692722e-02	k: 7615	n:460000
Cons ci ratio: 1.256658e-01	ci left: 1.978192e-03	ci right 2.245533e-03	k: 970	n:460000
KS ci ratio: 4.449643e-03	ci left: 6.264643e-01	ci right 6.292602e-01	k: 288817	n:460000
FZD10   460000 perm   184 sec   (2495 perm/sec)   p_kst 6.278630e-01   p_cons 2.108696e-03   p_joint 1.655435e-02

Joint ci ratio: 4.412190e-02	ci left: 1.615246e-02	ci right 1.688330e-02	k: 7762	n:470000
Cons ci ratio: 1.242658e-01	ci left: 1.981448e-03	ci right 2.246026e-03	k: 992	n:470000
KS ci ratio: 4.401203e-03	ci left: 6.265695e-01	ci right 6.293353e-01	k: 295138	n:470000
FZD10   470000 perm   190 sec   (2472 perm/sec)   p_kst 6.279532e-01   p_cons 2.110638e-03   p_joint 1.651489e-02

Joint ci ratio: 4.485152e-02	ci left: 1.531312e-02	ci right 1.601774e-02	k: 7518	n:480000
Cons ci ratio: 1.230331e-01	ci left: 1.980546e-03	ci right 2.242189e-03	k: 1012	n:480000
KS ci ratio: 4.354855e-03	ci left: 6.266121e-01	ci right 6.293489e-01	k: 301431	n:480000
FZD10   480000 perm   196 sec   (2451 perm/sec)   p_kst 6.279813e-01   p_cons 2.108333e-03   p_joint 1.566250e-02

Joint ci ratio: 4.456774e-02	ci left: 1.519634e-02	ci right 1.589104e-02	k: 7615	n:490000
Cons ci ratio: 1.220735e-01	ci left: 1.971778e-03	ci right 2.230084e-03	k: 1028	n:490000
KS ci ratio: 4.310110e-03	ci left: 6.266347e-01	ci right 6.293434e-01	k: 307715	n:490000
FZD10   490000 perm   202 sec   (2427 perm/sec)   p_kst 6.279898e-01   p_cons 2.097959e-03   p_joint 1.554082e-02

Joint ci ratio: 4.429507e-02	ci left: 1.508028e-02	ci right 1.576535e-02	k: 7710	n:500000
Cons ci ratio: 1.209621e-01	ci left: 1.969187e-03	ci right 2.224637e-03	k: 1047	n:500000
KS ci ratio: 4.265511e-03	ci left: 6.267886e-01	ci right 6.294699e-01	k: 314065	n:500000
FZD10   500000 perm   208 sec   (2405 perm/sec)   p_kst 6.281300e-01   p_cons 2.094000e-03   p_joint 1.542000e-02

Joint ci ratio: 4.486645e-02	ci left: 1.441608e-02	ci right 1.507965e-02	k: 7520	n:510000
Cons ci ratio: 1.197120e-01	ci left: 1.972415e-03	ci right 2.225452e-03	k: 1069	n:510000
KS ci ratio: 4.222214e-03	ci left: 6.269426e-01	ci right 6.295972e-01	k: 320418	n:510000
FZD10   510000 perm   215 sec   (2368 perm/sec)   p_kst 6.282706e-01   p_cons 2.096078e-03   p_joint 1.474510e-02

Joint ci ratio: 4.247265e-02	ci left: 1.577487e-02	ci right 1.646130e-02	k: 8380	n:520000
Cons ci ratio: 1.183913e-01	ci left: 1.979264e-03	ci right 2.230182e-03	k: 1093	n:520000
KS ci ratio: 4.181552e-03	ci left: 6.269406e-01	ci right 6.295695e-01	k: 326693	n:520000
FZD10   520000 perm   222 sec   (2347 perm/sec)   p_kst 6.282558e-01   p_cons 2.101923e-03   p_joint 1.611538e-02

Joint ci ratio: 4.202052e-02	ci left: 1.581514e-02	ci right 1.649582e-02	k: 8561	n:530000
Cons ci ratio: 1.170085e-01	ci left: 1.989532e-03	ci right 2.238602e-03	k: 1119	n:530000
KS ci ratio: 4.140352e-03	ci left: 6.271295e-01	ci right 6.297333e-01	k: 333069	n:530000
FZD10   530000 perm   228 sec   (2328 perm/sec)   p_kst 6.284321e-01   p_cons 2.111321e-03   p_joint 1.615283e-02

Joint ci ratio: 4.200449e-02	ci left: 1.553872e-02	ci right 1.620723e-02	k: 8570	n:540000
Cons ci ratio: 1.160287e-01	ci left: 1.986848e-03	ci right 2.233357e-03	k: 1138	n:540000
KS ci ratio: 4.103192e-03	ci left: 6.269872e-01	ci right 6.295670e-01	k: 339270	n:540000
FZD10   540000 perm   234 sec   (2308 perm/sec)   p_kst 6.282778e-01   p_cons 2.107407e-03   p_joint 1.587037e-02

Joint ci ratio: 4.278285e-02	ci left: 1.471279e-02	ci right 1.535779e-02	k: 8268	n:550000
Cons ci ratio: 1.147755e-01	ci left: 1.994867e-03	ci right 2.239516e-03	k: 1163	n:550000
KS ci ratio: 4.066222e-03	ci left: 6.269412e-01	ci right 6.294975e-01	k: 345521	n:550000
FZD10   550000 perm   240 sec   (2289 perm/sec)   p_kst 6.282200e-01   p_cons 2.114545e-03   p_joint 1.503273e-02

Joint ci ratio: 4.199917e-02	ci left: 1.499604e-02	ci right 1.564113e-02	k: 8577	n:560000
Cons ci ratio: 1.138021e-01	ci left: 1.993937e-03	ci right 2.236260e-03	k: 1183	n:560000
KS ci ratio: 4.030943e-03	ci left: 6.268147e-01	ci right 6.293482e-01	k: 351726	n:560000
FZD10   560000 perm   247 sec   (2271 perm/sec)   p_kst 6.280821e-01   p_cons 2.112500e-03   p_joint 1.531607e-02

Joint ci ratio: 4.163925e-02	ci left: 1.499162e-02	ci right 1.563086e-02	k: 8726	n:570000
Cons ci ratio: 1.128061e-01	ci left: 1.994754e-03	ci right 2.234913e-03	k: 1204	n:570000
KS ci ratio: 3.996370e-03	ci left: 6.267156e-01	ci right 6.292269e-01	k: 357944	n:570000
FZD10   570000 perm   253 sec   (2253 perm/sec)   p_kst 6.279719e-01   p_cons 2.112281e-03   p_joint 1.530877e-02

Joint ci ratio: 4.153624e-02	ci left: 1.480990e-02	ci right 1.543979e-02	k: 8771	n:580000
Cons ci ratio: 1.115626e-01	ci left: 2.005608e-03	ci right 2.244237e-03	k: 1231	n:580000
KS ci ratio: 3.961180e-03	ci left: 6.267960e-01	ci right 6.292855e-01	k: 364264	n:580000
FZD10   580000 perm   260 sec   (2235 perm/sec)   p_kst 6.280414e-01   p_cons 2.122414e-03   p_joint 1.512241e-02

Joint ci ratio: 4.125141e-02	ci left: 1.476352e-02	ci right 1.538702e-02	k: 8893	n:590000
Cons ci ratio: 1.106680e-01	ci left: 2.004571e-03	ci right 2.241039e-03	k: 1251	n:590000
KS ci ratio: 3.927957e-03	ci left: 6.267483e-01	ci right 6.292166e-01	k: 370510	n:590000
FZD10   590000 perm   266 sec   (2217 perm/sec)   p_kst 6.279831e-01   p_cons 2.120339e-03   p_joint 1.507288e-02

Joint ci ratio: 3.942895e-02	ci left: 1.588702e-02	ci right 1.652766e-02	k: 9723	n:600000
Cons ci ratio: 1.025365e-01	ci left: 2.305371e-03	ci right 2.556139e-03	k: 1457	n:600000
KS ci ratio: 3.894612e-03	ci left: 6.268156e-01	ci right 6.292632e-01	k: 376824	n:600000
FZD10   600000 perm   273 sec   (2198 perm/sec)   p_kst 6.280400e-01   p_cons 2.428333e-03   p_joint 1.620500e-02

Joint ci ratio: 3.895463e-02	ci left: 1.601131e-02	ci right 1.664903e-02	k: 9960	n:610000
Cons ci ratio: 1.017029e-01	ci left: 2.305917e-03	ci right 2.554584e-03	k: 1481	n:610000
KS ci ratio: 3.863539e-03	ci left: 6.267069e-01	ci right 6.291345e-01	k: 383032	n:610000
FZD10   610000 perm   280 sec   (2181 perm/sec)   p_kst 6.279213e-01   p_cons 2.427869e-03   p_joint 1.632787e-02

Joint ci ratio: 3.874300e-02	ci left: 1.592875e-02	ci right 1.655965e-02	k: 10070	n:620000
Cons ci ratio: 1.008222e-01	ci left: 2.309599e-03	ci right 2.556378e-03	k: 1507	n:620000
KS ci ratio: 3.831292e-03	ci left: 6.268342e-01	ci right 6.292420e-01	k: 389384	n:620000
FZD10   620000 perm   286 sec   (2165 perm/sec)   p_kst 6.280387e-01   p_cons 2.430645e-03   p_joint 1.624194e-02

Joint ci ratio: 3.849635e-02	ci left: 1.588026e-02	ci right 1.650515e-02	k: 10200	n:630000
Cons ci ratio: 9.989875e-02	ci left: 2.316268e-03	ci right 2.561359e-03	k: 1535	n:630000
KS ci ratio: 3.801440e-03	ci left: 6.267606e-01	ci right 6.291493e-01	k: 395612	n:630000
FZD10   630000 perm   295 sec   (2135 perm/sec)   p_kst 6.279556e-01   p_cons 2.436508e-03   p_joint 1.619048e-02

Outputting figure to mutsig2_images.part000000000068/FZD10.6_1750_630000_0.62796_0.0024365_0.01619.png
                gene_name: FZD10
               theta_stop: 0.100 
                    nperm: 630000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.0024 
      ci_cons_bounds_left: 0.0023 
     ci_cons_bounds_right: 0.0026 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 27 percent done.
FZD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.892703e-02	ci left: 6.379438e-01	ci right 6.567703e-01	k: 6474	n:10000
Cons ci ratio: 2.735360e-02	ci left: 6.632026e-01	ci right 6.816968e-01	k: 6725	n:10000
KS ci ratio: 3.425892e-02	ci left: 5.571200e-01	ci right 5.766410e-01	k: 5669	n:10000
FZD6   10000 perm   2 sec   (5155 perm/sec)   p_kst 5.669000e-01   p_cons 6.725000e-01   p_joint 6.474000e-01

Outputting figure to mutsig2_images.part000000000068/FZD6.6_2145_10000_0.5669_0.6725_0.6474.png
                gene_name: FZD6
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 29 percent done.
G3BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.714091e-03	ci left: 9.589035e-01	ci right 9.664239e-01	k: 9628	n:10000
Cons ci ratio: 3.399460e-02	ci left: 5.609292e-01	ci right 5.804296e-01	k: 5707	n:10000
KS ci ratio: 2.170226e-02	ci left: 7.569681e-01	ci right 7.736771e-01	k: 7654	n:10000
G3BP1   10000 perm   2 sec   (5915 perm/sec)   p_kst 7.654000e-01   p_cons 5.707000e-01   p_joint 9.628000e-01

Outputting figure to mutsig2_images.part000000000068/G3BP1.6_1445_10000_0.7654_0.5707_0.9628.png
                gene_name: G3BP1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 30 percent done.
GAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.093290e-02	ci left: 3.624157e-01	ci right 3.814590e-01	k: 3719	n:10000
KS ci ratio: 1.573306e-02	ci left: 8.543705e-01	ci right 8.680184e-01	k: 8613	n:10000
GAB1   10000 perm   2 sec   (5352 perm/sec)   p_kst 8.613000e-01   p_cons 3.719000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GAB1.6_2219_10000_0.8613_0.3719_1.png
                gene_name: GAB1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
GABBR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.316352e-02	ci left: 3.427329e-01	ci right 3.615533e-01	k: 3521	n:10000
Cons ci ratio: 9.427484e-02	ci left: 1.404072e-01	ci right 1.543988e-01	k: 1473	n:10000
KS ci ratio: 3.308081e-02	ci left: 5.742662e-01	ci right 5.936849e-01	k: 5840	n:10000
GABBR1   10000 perm   2 sec   (5133 perm/sec)   p_kst 5.840000e-01   p_cons 1.473000e-01   p_joint 3.521000e-01

Outputting figure to mutsig2_images.part000000000068/GABBR1.6_3119_10000_0.584_0.1473_0.3521.png
                gene_name: GABBR1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 33 percent done.
FYB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.039228e-02	ci left: 3.673888e-01	ci right 3.864829e-01	k: 3769	n:10000
Cons ci ratio: 1.716091e-02	ci left: 8.318516e-01	ci right 8.463503e-01	k: 8392	n:10000
KS ci ratio: 9.405044e-02	ci left: 1.409954e-01	ci right 1.550103e-01	k: 1479	n:10000
FYB   10000 perm   2 sec   (5337 perm/sec)   p_kst 1.479000e-01   p_cons 8.392000e-01   p_joint 3.769000e-01

Outputting figure to mutsig2_images.part000000000068/FYB.5_2562_10000_0.1479_0.8392_0.3769.png
                gene_name: FYB
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 35 percent done.
FYN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.096428e-02	ci left: 7.693191e-01	ci right 7.857189e-01	k: 7776	n:10000
KS ci ratio: 1.443060e-02	ci left: 8.741858e-01	ci right 8.869915e-01	k: 8807	n:10000
FYN   10000 perm   2 sec   (5399 perm/sec)   p_kst 8.807000e-01   p_cons 7.776000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/FYN.5_1818_10000_0.8807_0.7776_1.png
                gene_name: FYN
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
G3BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.876412e-02	ci left: 8.058264e-01	ci right 8.211905e-01	k: 8136	n:10000
Cons ci ratio: 5.397717e-02	ci left: 3.358779e-01	ci right 3.546124e-01	k: 3452	n:10000
KS ci ratio: 1.887534e-02	ci left: 8.039987e-01	ci right 8.194193e-01	k: 8118	n:10000
G3BP2   10000 perm   2 sec   (6228 perm/sec)   p_kst 8.118000e-01   p_cons 3.452000e-01   p_joint 8.136000e-01

Outputting figure to mutsig2_images.part000000000068/G3BP2.5_1493_10000_0.8118_0.3452_0.8136.png
                gene_name: G3BP2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 38 percent done.
GABPB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.324248e-02	ci left: 1.738909e-01	ci right 1.890951e-01	k: 1814	n:10000
Cons ci ratio: 4.384107e-02	ci left: 4.344288e-01	ci right 4.540037e-01	k: 4442	n:10000
KS ci ratio: 1.047174e-01	ci left: 1.164278e-01	ci right 1.293928e-01	k: 1228	n:10000
GABPB1   10000 perm   2 sec   (5665 perm/sec)   p_kst 1.228000e-01   p_cons 4.442000e-01   p_joint 1.814000e-01

Joint ci ratio: 5.608573e-02	ci left: 1.907652e-01	ci right 2.018232e-01	k: 3925	n:20000
Cons ci ratio: 3.000265e-02	ci left: 4.535234e-01	ci right 4.673881e-01	k: 9209	n:20000
KS ci ratio: 7.474277e-02	ci left: 1.163630e-01	ci right 1.254476e-01	k: 2417	n:20000
GABPB1   20000 perm   4 sec   (5118 perm/sec)   p_kst 1.208500e-01   p_cons 4.604500e-01   p_joint 1.962500e-01

Outputting figure to mutsig2_images.part000000000068/GABPB1.5_1268_20000_0.12085_0.46045_0.19625.png
                gene_name: GABPB1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 40 percent done.
GABRA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.300583e-02	ci left: 7.351239e-01	ci right 7.523339e-01	k: 7438	n:10000
KS ci ratio: 1.520250e-02	ci left: 8.625359e-01	ci right 8.758482e-01	k: 8693	n:10000
GABRA3   10000 perm   2 sec   (5224 perm/sec)   p_kst 8.693000e-01   p_cons 7.438000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GABRA3.5_1515_10000_0.8693_0.7438_1.png
                gene_name: GABRA3
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
GABRA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.864034e-02	ci left: 8.078575e-01	ci right 8.231582e-01	k: 8156	n:10000
Cons ci ratio: 1.111089e-02	ci left: 9.203848e-01	ci right 9.307656e-01	k: 9257	n:10000
KS ci ratio: 3.684280e-02	ci left: 5.210611e-01	ci right 5.407209e-01	k: 5309	n:10000
GABRA6   10000 perm   2 sec   (5745 perm/sec)   p_kst 5.309000e-01   p_cons 9.257000e-01   p_joint 8.156000e-01

Outputting figure to mutsig2_images.part000000000068/GABRA6.5_1398_10000_0.5309_0.9257_0.8156.png
                gene_name: GABRA6
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 43 percent done.
GABRE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.158686e-02	ci left: 4.605772e-01	ci right 4.802401e-01	k: 4704	n:10000
Cons ci ratio: 2.647618e-02	ci left: 6.775056e-01	ci right 6.957856e-01	k: 6867	n:10000
KS ci ratio: 6.838763e-02	ci left: 2.387696e-01	ci right 2.557779e-01	k: 2472	n:10000
GABRE   10000 perm   2 sec   (5850 perm/sec)   p_kst 2.472000e-01   p_cons 6.867000e-01   p_joint 4.704000e-01

Outputting figure to mutsig2_images.part000000000068/GABRE.5_1557_10000_0.2472_0.6867_0.4704.png
                gene_name: GABRE
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 44 percent done.
GABRG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.802117e-02	ci left: 1.581661e-01	ci right 1.728293e-01	k: 1654	n:10000
Cons ci ratio: 5.936928e-02	ci left: 2.944970e-01	ci right 3.126176e-01	k: 3035	n:10000
KS ci ratio: 8.588454e-02	ci left: 1.649446e-01	ci right 1.798468e-01	k: 1723	n:10000
GABRG3   10000 perm   2 sec   (5481 perm/sec)   p_kst 1.723000e-01   p_cons 3.035000e-01   p_joint 1.654000e-01

Outputting figure to mutsig2_images.part000000000068/GABRG3.5_1444_10000_0.1723_0.3035_0.1654.png
                gene_name: GABRG3
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 46 percent done.
GAK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.353182e-02	ci left: 1.423679e-01	ci right 1.564370e-01	k: 1493	n:10000
Cons ci ratio: 9.457605e-02	ci left: 1.396231e-01	ci right 1.535834e-01	k: 1465	n:10000
KS ci ratio: 9.627528e-02	ci left: 1.353117e-01	ci right 1.490975e-01	k: 1421	n:10000
GAK   10000 perm   2 sec   (4884 perm/sec)   p_kst 1.421000e-01   p_cons 1.465000e-01   p_joint 1.493000e-01

Outputting figure to mutsig2_images.part000000000068/GAK.5_4048_10000_0.1421_0.1465_0.1493.png
                gene_name: GAK
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 48 percent done.
GALNT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.684359e-02	ci left: 2.472706e-01	ci right 2.644719e-01	k: 2558	n:10000
Cons ci ratio: 3.229061e-02	ci left: 5.860046e-01	ci right 6.053396e-01	k: 5957	n:10000
KS ci ratio: 1.202174e-01	ci left: 9.029438e-02	ci right 1.019421e-01	k: 960	n:10000
GALNT10   10000 perm   2 sec   (4835 perm/sec)   p_kst 9.600000e-02   p_cons 5.957000e-01   p_joint 2.558000e-01

Joint ci ratio: 4.509087e-02	ci left: 2.680255e-01	ci right 2.804402e-01	k: 5484	n:20000
Cons ci ratio: 2.299092e-02	ci left: 5.855518e-01	ci right 5.992213e-01	k: 11848	n:20000
KS ci ratio: 8.343253e-02	ci left: 9.523778e-02	ci right 1.035791e-01	k: 1987	n:20000
GALNT10   20000 perm   4 sec   (4808 perm/sec)   p_kst 9.935000e-02   p_cons 5.924000e-01   p_joint 2.742000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT10.5_1860_20000_0.09935_0.5924_0.2742.png
                gene_name: GALNT10
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 49 percent done.
GALNT13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.197400e-02	ci left: 7.524148e-01	ci right 7.692330e-01	k: 7609	n:10000
Cons ci ratio: 1.230716e-01	ci left: 8.640461e-02	ci right 9.783428e-02	k: 920	n:10000
KS ci ratio: 1.354428e-02	ci left: 8.871865e-01	ci right 8.993833e-01	k: 8934	n:10000
GALNT13   10000 perm   2 sec   (4839 perm/sec)   p_kst 8.934000e-01   p_cons 9.200000e-02   p_joint 7.609000e-01

Joint ci ratio: 2.297189e-02	ci left: 5.859528e-01	ci right 5.996202e-01	k: 11856	n:20000
Cons ci ratio: 8.615353e-02	ci left: 8.974462e-02	ci right 9.787391e-02	k: 1875	n:20000
KS ci ratio: 1.023926e-02	ci left: 8.753652e-01	ci right 8.844240e-01	k: 17599	n:20000
GALNT13   20000 perm   4 sec   (4485 perm/sec)   p_kst 8.799500e-01   p_cons 9.375000e-02   p_joint 5.928000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT13.5_1715_20000_0.87995_0.09375_0.5928.png
                gene_name: GALNT13
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 51 percent done.
G2E3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.299376e-02	ci left: 7.353260e-01	ci right 7.525317e-01	k: 7440	n:10000
Cons ci ratio: 2.185929e-02	ci left: 7.543371e-01	ci right 7.711095e-01	k: 7628	n:10000
KS ci ratio: 3.322396e-02	ci left: 5.721598e-01	ci right 5.915924e-01	k: 5819	n:10000
G2E3   10000 perm   2 sec   (5848 perm/sec)   p_kst 5.819000e-01   p_cons 7.628000e-01   p_joint 7.440000e-01

Outputting figure to mutsig2_images.part000000000068/G2E3.4_2177_10000_0.5819_0.7628_0.744.png
                gene_name: G2E3
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 52 percent done.
G6PC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.167809e-02	ci left: 7.573729e-01	ci right 7.740721e-01	k: 7658	n:10000
KS ci ratio: 1.797425e-02	ci left: 8.187299e-01	ci right 8.336795e-01	k: 8263	n:10000
G6PC   10000 perm   3 sec   (3947 perm/sec)   p_kst 8.263000e-01   p_cons 7.658000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/G6PC.4_1094_10000_0.8263_0.7658_1.png
                gene_name: G6PC
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
GABPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.554170e-02	ci left: 8.573295e-01	ci right 8.708576e-01	k: 8642	n:10000
KS ci ratio: 1.954562e-02	ci left: 7.929363e-01	ci right 8.086881e-01	k: 8009	n:10000
GABPA   10000 perm   2 sec   (5962 perm/sec)   p_kst 8.009000e-01   p_cons 8.642000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GABPA.4_1401_10000_0.8009_0.8642_1.png
                gene_name: GABPA
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
GABRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.085277e-01	ci left: 1.091029e-01	ci right 1.217221e-01	k: 1153	n:10000
Cons ci ratio: 3.523883e-02	ci left: 5.431911e-01	ci right 5.627780e-01	k: 5530	n:10000
KS ci ratio: 1.109326e-01	ci left: 1.048095e-01	ci right 1.172181e-01	k: 1109	n:10000
GABRA1   10000 perm   2 sec   (5511 perm/sec)   p_kst 1.109000e-01   p_cons 5.530000e-01   p_joint 1.153000e-01

Joint ci ratio: 6.798054e-02	ci left: 1.376826e-01	ci right 1.474215e-01	k: 2850	n:20000
Cons ci ratio: 2.455839e-02	ci left: 5.532876e-01	ci right 5.670949e-01	k: 11204	n:20000
KS ci ratio: 7.902445e-02	ci left: 1.052043e-01	ci right 1.139096e-01	k: 2190	n:20000
GABRA1   20000 perm   4 sec   (4887 perm/sec)   p_kst 1.095000e-01   p_cons 5.602000e-01   p_joint 1.425000e-01

Outputting figure to mutsig2_images.part000000000068/GABRA1.4_1407_20000_0.1095_0.5602_0.1425.png
                gene_name: GABRA1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 57 percent done.
GABRP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.749872e-02	ci left: 5.122545e-01	ci right 5.319326e-01	k: 5221	n:10000
Cons ci ratio: 1.153651e-01	ci left: 9.749841e-02	ci right 1.095337e-01	k: 1034	n:10000
KS ci ratio: 4.305088e-02	ci left: 4.434080e-01	ci right 4.630192e-01	k: 4532	n:10000
GABRP   10000 perm   2 sec   (5202 perm/sec)   p_kst 4.532000e-01   p_cons 1.034000e-01   p_joint 5.221000e-01

Joint ci ratio: 5.901115e-02	ci left: 1.753892e-01	ci right 1.861038e-01	k: 3614	n:20000
Cons ci ratio: 8.287816e-02	ci left: 9.641542e-02	ci right 1.048011e-01	k: 2011	n:20000
KS ci ratio: 3.142397e-02	ci left: 4.306592e-01	ci right 4.444589e-01	k: 8751	n:20000
GABRP   20000 perm   5 sec   (4277 perm/sec)   p_kst 4.375500e-01   p_cons 1.005500e-01   p_joint 1.807000e-01

Outputting figure to mutsig2_images.part000000000068/GABRP.4_1359_20000_0.43755_0.10055_0.1807.png
                gene_name: GABRP
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 59 percent done.
GABRR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.812958e-02	ci left: 1.931834e-01	ci right 2.089911e-01	k: 2010	n:10000
Cons ci ratio: 6.256426e-02	ci left: 2.729972e-01	ci right 2.907301e-01	k: 2818	n:10000
KS ci ratio: 8.795749e-02	ci left: 1.583626e-01	ci right 1.730327e-01	k: 1656	n:10000
GABRR2   10000 perm   2 sec   (5484 perm/sec)   p_kst 1.656000e-01   p_cons 2.818000e-01   p_joint 2.010000e-01

Outputting figure to mutsig2_images.part000000000068/GABRR2.4_1509_10000_0.1656_0.2818_0.201.png
                gene_name: GABRR2
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 60 percent done.
GAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.246035e-02	ci left: 3.487950e-01	ci right 3.676877e-01	k: 3582	n:10000
Cons ci ratio: 4.685049e-02	ci left: 4.020311e-01	ci right 4.214204e-01	k: 4117	n:10000
KS ci ratio: 5.001892e-02	ci left: 3.708706e-01	ci right 3.899991e-01	k: 3804	n:10000
GAD2   10000 perm   2 sec   (6026 perm/sec)   p_kst 3.804000e-01   p_cons 4.117000e-01   p_joint 3.582000e-01

Outputting figure to mutsig2_images.part000000000068/GAD2.4_1822_10000_0.3804_0.4117_0.3582.png
                gene_name: GAD2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 62 percent done.
GAL3ST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.784120e-02	ci left: 3.919717e-01	ci right 4.112857e-01	k: 4016	n:10000
Cons ci ratio: 3.690941e-02	ci left: 5.201603e-01	ci right 5.398222e-01	k: 5300	n:10000
KS ci ratio: 7.152117e-02	ci left: 2.226698e-01	ci right 2.392872e-01	k: 2309	n:10000
GAL3ST4   10000 perm   2 sec   (6012 perm/sec)   p_kst 2.309000e-01   p_cons 5.300000e-01   p_joint 4.016000e-01

Outputting figure to mutsig2_images.part000000000068/GAL3ST4.4_1473_10000_0.2309_0.53_0.4016.png
                gene_name: GAL3ST4
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 63 percent done.
GALNS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.730395e-02	ci left: 6.640082e-01	ci right 6.824908e-01	k: 6733	n:10000
Cons ci ratio: 1.806805e-02	ci left: 8.172052e-01	ci right 8.322052e-01	k: 8248	n:10000
KS ci ratio: 4.290354e-02	ci left: 4.451045e-01	ci right 4.647218e-01	k: 4549	n:10000
GALNS   10000 perm   2 sec   (6044 perm/sec)   p_kst 4.549000e-01   p_cons 8.248000e-01   p_joint 6.733000e-01

Outputting figure to mutsig2_images.part000000000068/GALNS.4_1625_10000_0.4549_0.8248_0.6733.png
                gene_name: GALNS
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 65 percent done.
GALNT11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.385736e-02	ci left: 7.208794e-01	ci right 7.383866e-01	k: 7297	n:10000
Cons ci ratio: 8.609581e-02	ci left: 1.642567e-01	ci right 1.791350e-01	k: 1716	n:10000
KS ci ratio: 2.337403e-02	ci left: 7.289600e-01	ci right 7.463014e-01	k: 7377	n:10000
GALNT11   10000 perm   2 sec   (6467 perm/sec)   p_kst 7.377000e-01   p_cons 1.716000e-01   p_joint 7.297000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT11.4_1871_10000_0.7377_0.1716_0.7297.png
                gene_name: GALNT11
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 67 percent done.
GALNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.978639e-02	ci left: 4.826547e-01	ci right 5.023497e-01	k: 4925	n:10000
Cons ci ratio: 6.112769e-02	ci left: 2.824065e-01	ci right 3.003152e-01	k: 2913	n:10000
KS ci ratio: 5.242615e-02	ci left: 3.490931e-01	ci right 3.679893e-01	k: 3585	n:10000
GALNT2   10000 perm   2 sec   (5874 perm/sec)   p_kst 3.585000e-01   p_cons 2.913000e-01   p_joint 4.925000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT2.4_1780_10000_0.3585_0.2913_0.4925.png
                gene_name: GALNT2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 68 percent done.
GALNT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.955229e-02	ci left: 2.932083e-01	ci right 3.113070e-01	k: 3022	n:10000
Cons ci ratio: 1.036624e-01	ci left: 1.185779e-01	ci right 1.316413e-01	k: 1250	n:10000
KS ci ratio: 4.528124e-02	ci left: 4.185735e-01	ci right 4.380683e-01	k: 4283	n:10000
GALNT3   10000 perm   2 sec   (5613 perm/sec)   p_kst 4.283000e-01   p_cons 1.250000e-01   p_joint 3.022000e-01

Joint ci ratio: 4.549066e-02	ci left: 2.645508e-01	ci right 2.769159e-01	k: 5414	n:20000
Cons ci ratio: 7.114030e-02	ci left: 1.270914e-01	ci right 1.365159e-01	k: 2635	n:20000
KS ci ratio: 3.234068e-02	ci left: 4.165887e-01	ci right 4.303335e-01	k: 8469	n:20000
GALNT3   20000 perm   4 sec   (4949 perm/sec)   p_kst 4.234500e-01   p_cons 1.317500e-01   p_joint 2.707000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT3.4_1942_20000_0.42345_0.13175_0.2707.png
                gene_name: GALNT3
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 70 percent done.
FYTTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.220355e-02	ci left: 5.873093e-01	ci right 6.066342e-01	k: 5970	n:10000
Cons ci ratio: 5.524235e-02	ci left: 3.255497e-01	ci right 3.441466e-01	k: 3348	n:10000
KS ci ratio: 3.047144e-02	ci left: 6.137180e-01	ci right 6.328101e-01	k: 6233	n:10000
FYTTD1   10000 perm   2 sec   (5535 perm/sec)   p_kst 6.233000e-01   p_cons 3.348000e-01   p_joint 5.970000e-01

Outputting figure to mutsig2_images.part000000000068/FYTTD1.3_1022_10000_0.6233_0.3348_0.597.png
                gene_name: FYTTD1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 71 percent done.
FZD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.219310e-02	ci left: 1.776288e-01	ci right 1.929550e-01	k: 1852	n:10000
KS ci ratio: 2.397830e-02	ci left: 7.188599e-01	ci right 7.364073e-01	k: 7277	n:10000
FZD7   10000 perm   2 sec   (5737 perm/sec)   p_kst 7.277000e-01   p_cons 1.852000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/FZD7.3_1729_10000_0.7277_0.1852_1.png
                gene_name: FZD7
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
G6PC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.225565e-02	ci left: 3.505841e-01	ci right 3.694975e-01	k: 3600	n:10000
Cons ci ratio: 3.585304e-03	ci left: 9.898317e-01	ci right 9.934731e-01	k: 9918	n:10000
KS ci ratio: 7.004364e-02	ci left: 2.300756e-01	ci right 2.468770e-01	k: 2384	n:10000
G6PC3   10000 perm   2 sec   (6033 perm/sec)   p_kst 2.384000e-01   p_cons 9.918000e-01   p_joint 3.600000e-01

Outputting figure to mutsig2_images.part000000000068/G6PC3.3_1065_10000_0.2384_0.9918_0.36.png
                gene_name: G6PC3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 75 percent done.
G6PD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.657119e-02	ci left: 4.049202e-01	ci right 4.243295e-01	k: 4146	n:10000
Cons ci ratio: 2.206455e-02	ci left: 7.508973e-01	ci right 7.677513e-01	k: 7594	n:10000
KS ci ratio: 5.293134e-02	ci left: 3.447203e-01	ci right 3.635648e-01	k: 3541	n:10000
G6PD   10000 perm   2 sec   (6583 perm/sec)   p_kst 3.541000e-01   p_cons 7.594000e-01   p_joint 4.146000e-01

Outputting figure to mutsig2_images.part000000000068/G6PD.3_1690_10000_0.3541_0.7594_0.4146.png
                gene_name: G6PD
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 76 percent done.
GAB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.939054e-02	ci left: 4.876522e-01	ci right 5.073492e-01	k: 4975	n:10000
Cons ci ratio: 2.817710e-02	ci left: 6.499155e-01	ci right 6.685916e-01	k: 6593	n:10000
KS ci ratio: 5.331531e-02	ci left: 3.414412e-01	ci right 3.602457e-01	k: 3508	n:10000
GAB4   10000 perm   2 sec   (5328 perm/sec)   p_kst 3.508000e-01   p_cons 6.593000e-01   p_joint 4.975000e-01

Outputting figure to mutsig2_images.part000000000068/GAB4.3_1765_10000_0.3508_0.6593_0.4975.png
                gene_name: GAB4
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 78 percent done.
GABPB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.056883e-02	ci left: 6.122110e-01	ci right 6.313180e-01	k: 6218	n:10000
Cons ci ratio: 6.142503e-02	ci left: 2.804252e-01	ci right 2.982977e-01	k: 2893	n:10000
KS ci ratio: 2.502117e-02	ci left: 7.015006e-01	ci right 7.193767e-01	k: 7105	n:10000
GABPB2   10000 perm   2 sec   (4302 perm/sec)   p_kst 7.105000e-01   p_cons 2.893000e-01   p_joint 6.218000e-01

Outputting figure to mutsig2_images.part000000000068/GABPB2.3_1379_10000_0.7105_0.2893_0.6218.png
                gene_name: GABPB2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 79 percent done.
GALK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.353840e-02	ci left: 3.395535e-01	ci right 3.583346e-01	k: 3489	n:10000
Cons ci ratio: 5.356197e-02	ci left: 3.393548e-01	ci right 3.581334e-01	k: 3487	n:10000
KS ci ratio: 7.006293e-02	ci left: 2.299769e-01	ci right 2.467758e-01	k: 2383	n:10000
GALK2   10000 perm   2 sec   (5933 perm/sec)   p_kst 2.383000e-01   p_cons 3.487000e-01   p_joint 3.489000e-01

Outputting figure to mutsig2_images.part000000000068/GALK2.3_1441_10000_0.2383_0.3487_0.3489.png
                gene_name: GALK2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 81 percent done.
GALNT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.053044e-03	ci left: 9.736569e-01	ci right 9.796610e-01	k: 9768	n:10000
KS ci ratio: 2.572211e-02	ci left: 6.899028e-01	ci right 7.079812e-01	k: 6990	n:10000
GALNT6   10000 perm   2 sec   (4237 perm/sec)   p_kst 6.990000e-01   p_cons 9.768000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GALNT6.3_1909_10000_0.699_0.9768_1.png
                gene_name: GALNT6
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
GALNT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.022542e-02	ci left: 6.175362e-01	ci right 6.365898e-01	k: 6271	n:10000
Cons ci ratio: 4.046880e-02	ci left: 4.741611e-01	ci right 4.938483e-01	k: 4840	n:10000
KS ci ratio: 2.480242e-02	ci left: 7.051326e-01	ci right 7.229426e-01	k: 7141	n:10000
GALNT7   10000 perm   2 sec   (5186 perm/sec)   p_kst 7.141000e-01   p_cons 4.840000e-01   p_joint 6.271000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT7.3_2022_10000_0.7141_0.484_0.6271.png
                gene_name: GALNT7
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 84 percent done.
FZD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.146865e-01	ci left: 9.857012e-02	ci right 1.106613e-01	k: 1045	n:10000
KS ci ratio: 6.979389e-02	ci left: 2.313597e-01	ci right 2.481922e-01	k: 2397	n:10000
FZD2   10000 perm   2 sec   (6523 perm/sec)   p_kst 2.397000e-01   p_cons 1.045000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.228827e-02	ci left: 9.769141e-02	ci right 1.061247e-01	k: 2037	n:20000
KS ci ratio: 4.956974e-02	ci left: 2.322601e-01	ci right 2.441161e-01	k: 4763	n:20000
FZD2   20000 perm   4 sec   (5700 perm/sec)   p_kst 2.381500e-01   p_cons 1.018500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/FZD2.2_1702_20000_0.23815_0.10185_1.png
                gene_name: FZD2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
FZD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.618985e-02	ci left: 2.012637e-01	ci right 2.173060e-01	k: 2092	n:10000
KS ci ratio: 1.310673e-01	ci left: 7.669486e-02	ci right 8.755004e-02	k: 820	n:10000
FZD4   10000 perm   2 sec   (5148 perm/sec)   p_kst 8.200000e-02   p_cons 2.092000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 5.372893e-02	ci left: 2.045211e-01	ci right 2.158633e-01	k: 4203	n:20000
KS ci ratio: 9.330090e-02	ci left: 7.730380e-02	ci right 8.491851e-02	k: 1621	n:20000
FZD4   20000 perm   4 sec   (4894 perm/sec)   p_kst 8.105000e-02   p_cons 2.101500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/FZD4.2_1622_20000_0.08105_0.21015_1.png
                gene_name: FZD4
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
GABRR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.356693e-02	ci left: 4.375213e-01	ci right 4.571094e-01	k: 4473	n:10000
KS ci ratio: 6.218018e-02	ci left: 2.754728e-01	ci right 2.932529e-01	k: 2843	n:10000
GABRR1   10000 perm   2 sec   (6658 perm/sec)   p_kst 2.843000e-01   p_cons 4.473000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GABRR1.2_1480_10000_0.2843_0.4473_1.png
                gene_name: GABRR1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
GABRR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.966016e-02	ci left: 2.320511e-01	ci right 2.489003e-01	k: 2404	n:10000
Cons ci ratio: 7.915936e-03	ci left: 9.569143e-01	ci right 9.646143e-01	k: 9609	n:10000
KS ci ratio: 2.689486e-01	ci left: 1.799971e-02	ci right 2.368423e-02	k: 207	n:10000
GABRR3   10000 perm   2 sec   (6254 perm/sec)   p_kst 2.070000e-02   p_cons 9.609000e-01   p_joint 2.404000e-01

Joint ci ratio: 6.421644e-02	ci left: 1.519832e-01	ci right 1.621167e-01	k: 3140	n:20000
Cons ci ratio: 5.839033e-03	ci left: 9.546635e-01	ci right 9.603025e-01	k: 19151	n:20000
KS ci ratio: 1.950228e-01	ci left: 1.786671e-02	ci right 2.177465e-02	k: 395	n:20000
GABRR3   20000 perm   4 sec   (5594 perm/sec)   p_kst 1.975000e-02   p_cons 9.575500e-01   p_joint 1.570000e-01

Joint ci ratio: 7.356266e-02	ci left: 8.327703e-02	ci right 8.966998e-02	k: 2593	n:30000
Cons ci ratio: 4.791137e-03	ci left: 9.547799e-01	ci right 9.593977e-01	k: 28714	n:30000
KS ci ratio: 1.602024e-01	ci left: 1.799732e-02	ci right 2.116335e-02	k: 586	n:30000
GABRR3   30000 perm   6 sec   (5353 perm/sec)   p_kst 1.953333e-02   p_cons 9.571333e-01   p_joint 8.643333e-02

Joint ci ratio: 5.498152e-02	ci left: 1.096414e-01	ci right 1.158649e-01	k: 4509	n:40000
Cons ci ratio: 4.141749e-03	ci left: 9.552472e-01	ci right 9.592361e-01	k: 38291	n:40000
KS ci ratio: 1.373737e-01	ci left: 1.857798e-02	ci right 2.134233e-02	k: 797	n:40000
GABRR3   40000 perm   8 sec   (5191 perm/sec)   p_kst 1.992500e-02   p_cons 9.572750e-01   p_joint 1.127250e-01

Joint ci ratio: 4.885290e-02	ci left: 1.112861e-01	ci right 1.168788e-01	k: 5703	n:50000
Cons ci ratio: 3.731166e-03	ci left: 9.548589e-01	ci right 9.584478e-01	k: 47834	n:50000
KS ci ratio: 1.220311e-01	ci left: 1.898479e-02	ci right 2.147135e-02	k: 1010	n:50000
GABRR3   50000 perm   10 sec   (5063 perm/sec)   p_kst 2.020000e-02   p_cons 9.566800e-01   p_joint 1.140600e-01

Joint ci ratio: 4.005827e-02	ci left: 1.348694e-01	ci right 1.403990e-01	k: 8257	n:60000
Cons ci ratio: 3.396232e-03	ci left: 9.552614e-01	ci right 9.585275e-01	k: 57415	n:60000
KS ci ratio: 1.113614e-01	ci left: 1.910545e-02	ci right 2.137463e-02	k: 1213	n:60000
GABRR3   60000 perm   12 sec   (4948 perm/sec)   p_kst 2.021667e-02   p_cons 9.569167e-01   p_joint 1.376167e-01

Joint ci ratio: 4.500042e-02	ci left: 9.559492e-02	ci right 1.000099e-01	k: 6845	n:70000
Cons ci ratio: 3.158994e-03	ci left: 9.549918e-01	ci right 9.580274e-01	k: 66957	n:70000
KS ci ratio: 1.031503e-01	ci left: 1.917060e-02	ci right 2.126944e-02	k: 1414	n:70000
GABRR3   70000 perm   14 sec   (4839 perm/sec)   p_kst 2.020000e-02   p_cons 9.565286e-01   p_joint 9.778571e-02

Joint ci ratio: 4.383907e-02	ci left: 8.886710e-02	ci right 9.286263e-02	k: 7268	n:80000
Cons ci ratio: 2.944819e-03	ci left: 9.553810e-01	ci right 9.582108e-01	k: 76545	n:80000
KS ci ratio: 9.603903e-02	ci left: 1.941938e-02	ci right 2.139062e-02	k: 1631	n:80000
GABRR3   80000 perm   17 sec   (4740 perm/sec)   p_kst 2.038750e-02   p_cons 9.568125e-01   p_joint 9.085000e-02

Outputting figure to mutsig2_images.part000000000068/GABRR3.2_1440_80000_0.020387_0.95681_0.09085.png
                gene_name: GABRR3
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.093 

Current progress: 90 percent done.
GAL3ST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.565505e-03	ci left: 9.694208e-01	ci right 9.758999e-01	k: 9728	n:10000
KS ci ratio: 2.559385e-02	ci left: 6.920201e-01	ci right 7.100626e-01	k: 7011	n:10000
GAL3ST1   10000 perm   2 sec   (6423 perm/sec)   p_kst 7.011000e-01   p_cons 9.728000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GAL3ST1.2_1280_10000_0.7011_0.9728_1.png
                gene_name: GAL3ST1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
GALM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.234426e-02	ci left: 5.852018e-01	ci right 6.045429e-01	k: 5949	n:10000
KS ci ratio: 4.704442e-02	ci left: 4.000388e-01	ci right 4.194138e-01	k: 4097	n:10000
GALM   10000 perm   2 sec   (6551 perm/sec)   p_kst 4.097000e-01   p_cons 5.949000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000068/GALM.2_1057_10000_0.4097_0.5949_1.png
                gene_name: GALM
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
GALNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.853744e-02	ci left: 3.004459e-01	ci right 3.186652e-01	k: 3095	n:10000
Cons ci ratio: 1.154273e-01	ci left: 9.740099e-02	ci right 1.094311e-01	k: 1033	n:10000
KS ci ratio: 7.273648e-03	ci left: 9.630998e-01	ci right 9.702249e-01	k: 9668	n:10000
GALNT1   10000 perm   2 sec   (6262 perm/sec)   p_kst 9.668000e-01   p_cons 1.033000e-01   p_joint 3.095000e-01

Joint ci ratio: 3.502960e-02	ci left: 3.782484e-01	ci right 3.917851e-01	k: 7700	n:20000
Cons ci ratio: 8.184185e-02	ci left: 9.867308e-02	ci right 1.071428e-01	k: 2057	n:20000
KS ci ratio: 4.985990e-03	ci left: 9.661926e-01	ci right 9.710699e-01	k: 19374	n:20000
GALNT1   20000 perm   4 sec   (5492 perm/sec)   p_kst 9.687000e-01   p_cons 1.028500e-01   p_joint 3.850000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT1.2_1724_20000_0.9687_0.10285_0.385.png
                gene_name: GALNT1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 95 percent done.
GALNT12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.050926e-02	ci left: 7.769169e-01	ci right 7.931167e-01	k: 7851	n:10000
Cons ci ratio: 4.685049e-02	ci left: 4.020311e-01	ci right 4.214204e-01	k: 4117	n:10000
KS ci ratio: 4.082690e-02	ci left: 4.697655e-01	ci right 4.894464e-01	k: 4796	n:10000
GALNT12   10000 perm   2 sec   (6193 perm/sec)   p_kst 4.796000e-01   p_cons 4.117000e-01   p_joint 7.851000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT12.2_1786_10000_0.4796_0.4117_0.7851.png
                gene_name: GALNT12
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 97 percent done.
GALNT8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.955787e-02	ci left: 7.927334e-01	ci right 8.084911e-01	k: 8007	n:10000
Cons ci ratio: 5.767252e-02	ci left: 3.067933e-01	ci right 3.251140e-01	k: 3159	n:10000
KS ci ratio: 4.037047e-03	ci left: 9.874126e-01	ci right 9.914948e-01	k: 9896	n:10000
GALNT8   10000 perm   2 sec   (6029 perm/sec)   p_kst 9.896000e-01   p_cons 3.159000e-01   p_joint 8.007000e-01

Outputting figure to mutsig2_images.part000000000068/GALNT8.2_1958_10000_0.9896_0.3159_0.8007.png
                gene_name: GALNT8
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 98 percent done.
GALNT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.076755e-01	ci left: 3.081908e-02	ci right 3.805543e-02	k: 343	n:10000
Cons ci ratio: 5.936928e-02	ci left: 2.944970e-01	ci right 3.126176e-01	k: 3035	n:10000
KS ci ratio: 2.847290e-01	ci left: 1.594989e-02	ci right 2.133572e-02	k: 185	n:10000
GALNT9   10000 perm   2 sec   (4772 perm/sec)   p_kst 1.850000e-02   p_cons 3.035000e-01   p_joint 3.430000e-02

Joint ci ratio: 9.129435e-02	ci left: 8.053403e-02	ci right 8.828730e-02	k: 1687	n:20000
Cons ci ratio: 4.209001e-02	ci left: 2.960884e-01	ci right 3.088691e-01	k: 6049	n:20000
KS ci ratio: 1.952745e-01	ci left: 1.781911e-02	ci right 2.172227e-02	k: 394	n:20000
GALNT9   20000 perm   4 sec   (4795 perm/sec)   p_kst 1.970000e-02   p_cons 3.024500e-01   p_joint 8.435000e-02

Joint ci ratio: 1.149234e-01	ci left: 3.518393e-02	ci right 3.950626e-02	k: 1119	n:30000
Cons ci ratio: 3.443437e-02	ci left: 2.964425e-01	ci right 3.068626e-01	k: 9049	n:30000
KS ci ratio: 1.595109e-01	ci left: 1.815744e-02	ci right 2.133653e-02	k: 591	n:30000
GALNT9   30000 perm   6 sec   (4823 perm/sec)   p_kst 1.970000e-02   p_cons 3.016333e-01   p_joint 3.730000e-02

Joint ci ratio: 9.291654e-02	ci left: 4.061722e-02	ci right 4.459953e-02	k: 1703	n:40000
Cons ci ratio: 2.965848e-02	ci left: 2.994443e-01	ci right 3.084842e-01	k: 12158	n:40000
KS ci ratio: 1.396219e-01	ci left: 1.797425e-02	ci right 2.069616e-02	k: 772	n:40000
GALNT9   40000 perm   8 sec   (4799 perm/sec)   p_kst 1.930000e-02   p_cons 3.039500e-01   p_joint 4.257500e-02

Joint ci ratio: 5.638650e-02	ci left: 8.564929e-02	ci right 9.063865e-02	k: 4406	n:50000
Cons ci ratio: 2.651702e-02	ci left: 3.000892e-01	ci right 3.081736e-01	k: 15206	n:50000
KS ci ratio: 1.243092e-01	ci left: 1.828656e-02	ci right 2.072967e-02	k: 974	n:50000
GALNT9   50000 perm   11 sec   (4674 perm/sec)   p_kst 1.948000e-02   p_cons 3.041200e-01   p_joint 8.812000e-02

Joint ci ratio: 6.667765e-02	ci left: 5.264768e-02	ci right 5.629557e-02	k: 3267	n:60000
Cons ci ratio: 2.424518e-02	ci left: 2.997726e-01	ci right 3.071465e-01	k: 18207	n:60000
KS ci ratio: 1.145312e-01	ci left: 1.805215e-02	ci right 2.026138e-02	k: 1148	n:60000
GALNT9   60000 perm   13 sec   (4455 perm/sec)   p_kst 1.913333e-02   p_cons 3.034500e-01   p_joint 5.445000e-02

Joint ci ratio: 7.598381e-02	ci left: 3.523507e-02	ci right 3.803208e-02	k: 2563	n:70000
Cons ci ratio: 2.245933e-02	ci left: 2.998103e-01	ci right 3.066346e-01	k: 21225	n:70000
KS ci ratio: 1.063798e-01	ci left: 1.801537e-02	ci right 2.005334e-02	k: 1331	n:70000
GALNT9   70000 perm   16 sec   (4250 perm/sec)   p_kst 1.901429e-02   p_cons 3.032143e-01   p_joint 3.661429e-02

Joint ci ratio: 4.040102e-02	ci left: 1.031564e-01	ci right 1.074223e-01	k: 8422	n:80000
Cons ci ratio: 2.098474e-02	ci left: 3.005143e-01	ci right 3.068999e-01	k: 24296	n:80000
KS ci ratio: 9.885870e-02	ci left: 1.832128e-02	ci right 2.023881e-02	k: 1541	n:80000
GALNT9   80000 perm   20 sec   (3958 perm/sec)   p_kst 1.926250e-02   p_cons 3.037000e-01   p_joint 1.052750e-01

Outputting figure to mutsig2_images.part000000000068/GALNT9.2_1856_80000_0.019262_0.3037_0.10527.png
                gene_name: GALNT9
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000068
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 68 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 9893948: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000069> was used as the working directory.
Started at Sat Oct  6 00:09:18 2012
Results reported at Sat Oct  6 00:22:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000069.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000069.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 69  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000069.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    806.57 sec.
    Max Memory :      3630 MB
    Max Swap   :      5984 MB

    Max Processes  :         7
    Max Threads    :        72

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
69
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 69
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 69: processing genes 6131 - 6220
Calculating significance of each gene.
Using projection method.
6131	GALNTL1	2.550759e-01
6132	GALNTL2	1.980351e-02
6133	GALNTL4	9.442226e-01
6134	GALNTL5	9.655321e-03
6135	GALNTL6	7.379732e-03
6136	GALP	1
6137	GALR1	7.416626e-01
6138	GALR2	1
6139	GALR3	1
6140	GALT	6.338702e-01
6141	GAMT	5.874756e-01
6142	GAN	3.177030e-01
6143	GANAB	5.057718e-01
6144	GANC	8.392183e-01
6145	GAP43	7.878626e-02
6146	GAPDH	1
6147	GAPDHS	1
6148	GAPT	5.081596e-01
6149	GAPVD1	8.489946e-01
6150	GAR1	5.593095e-01
6151	GARNL3	8.845202e-01
6152	GARS	6.256922e-01
6153	GART	7.795628e-01
6154	GAS2	5.378298e-01
6155	GAS2L1	1
6156	GAS2L2	2.430637e-01
6157	GAS2L3	4.533328e-01
6158	GAS6	9.462670e-01
6159	GAS7	1.581128e-01
6160	GAS8	7.298210e-01
6161	GAST	1.683490e-01
6162	GATA1	1.652543e-01
6163	GATA2	4.929445e-01
6164	GATA3	2.188816e-01
6165	GATA4	8.132764e-01
6166	GATA5	1
6167	GATA6	6.112378e-01
6168	GATAD1	1
6169	GATAD2A	8.183405e-01
6170	GATAD2B	3.145849e-01
6171	GATC	1
6172	GATM	7.794657e-01
6173	GATS	1.808000e-01
6174	GATSL3	1
6175	GBA	1
6176	GBA2	4.449308e-01
6177	GBA3	3.247741e-01
6178	GBAS	5.027353e-01
6179	GBE1	3.215663e-01
6180	GBF1	1.184650e-01
6181	GBGT1	1
6182	GBP1	1.692940e-01
6183	GBP2	5.462805e-01
6184	GBP3	2.609438e-01
6185	GBP4	4.800312e-01
6186	GBP5	5.733642e-01
6187	GBP6	1.520244e-01
6188	GBP7	2.729642e-02
6189	GBX1	6.694475e-01
6190	GBX2	5.941378e-01
6191	GC	4.729679e-01
6192	GCA	1
6193	GCAT	6.960610e-01
6194	GCC1	4.590999e-01
6195	GCC2	8.161582e-01
6196	GCDH	3.691015e-01
6197	GCET2	5.198785e-01
6198	GCFC1	4.785909e-01
6199	GCG	1.989190e-01
6200	GCH1	1
6201	GCHFR	2.766754e-01
6202	GCK	8.366252e-01
6203	GCKR	3.324960e-01
6204	GCLC	6.450786e-01
6205	GCLM	6.337038e-01
6206	GCM1	9.071034e-01
6207	GCM2	3.819926e-01
6208	GCN1L1	9.984820e-01
6209	GCNT1	7.457208e-02
6210	GCNT2	3.989741e-02
6211	GCNT3	2.141368e-01
6212	GCNT4	6.151474e-02
6213	GCOM1	4.875585e-02
6214	GCSH	1
6215	GDA	1
6216	GDAP1	5.949998e-01
6217	GDAP1L1	3.695271e-01
6218	GDAP2	4.136460e-01
6219	GDE1	1
6220	GDF10	7.342283e-01
Done

Running MutSig 2:
Scatter job 69: processing genes 6131 - 6220
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GBF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.724812e-02	ci left: 6.649144e-01	ci right 6.833840e-01	k: 6742	n:10000
Cons ci ratio: 5.209730e-02	ci left: 3.519757e-01	ci right 3.709051e-01	k: 3614	n:10000
KS ci ratio: 2.520978e-02	ci left: 6.983735e-01	ci right 7.163055e-01	k: 7074	n:10000
GBF1   10000 perm   3 sec   (3797 perm/sec)   p_kst 7.074000e-01   p_cons 3.614000e-01   p_joint 6.742000e-01

Outputting figure to mutsig2_images.part000000000069/GBF1.12_5736_10000_0.7074_0.3614_0.6742.png
                gene_name: GBF1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 2 percent done.
GCNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.793918e-02	ci left: 6.537398e-01	ci right 6.723652e-01	k: 6631	n:10000
Cons ci ratio: 6.421114e-02	ci left: 2.627020e-01	ci right 2.802313e-01	k: 2714	n:10000
KS ci ratio: 1.760380e-02	ci left: 8.247294e-01	ci right 8.394766e-01	k: 8322	n:10000
GCNT2   10000 perm   2 sec   (5377 perm/sec)   p_kst 8.322000e-01   p_cons 2.714000e-01   p_joint 6.631000e-01

Outputting figure to mutsig2_images.part000000000069/GCNT2.11_3073_10000_0.8322_0.2714_0.6631.png
                gene_name: GCNT2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 4 percent done.
GALNTL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.742078e-02	ci left: 8.276794e-01	ci right 8.423249e-01	k: 8351	n:10000
Cons ci ratio: 3.339492e-02	ci left: 5.696526e-01	ci right 5.891012e-01	k: 5794	n:10000
KS ci ratio: 2.101274e-02	ci left: 7.685089e-01	ci right 7.849296e-01	k: 7768	n:10000
GALNTL2   10000 perm   2 sec   (6212 perm/sec)   p_kst 7.768000e-01   p_cons 5.794000e-01   p_joint 8.351000e-01

Outputting figure to mutsig2_images.part000000000069/GALNTL2.8_1960_10000_0.7768_0.5794_0.8351.png
                gene_name: GALNTL2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 5 percent done.
GALNTL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.439852e-01	ci left: 6.401182e-02	ci right 7.404101e-02	k: 689	n:10000
Cons ci ratio: 3.157826e-02	ci left: 5.967448e-01	ci right 6.159932e-01	k: 6064	n:10000
KS ci ratio: 2.209987e-01	ci left: 2.712237e-02	ci right 3.395474e-02	k: 304	n:10000
GALNTL5   10000 perm   2 sec   (6561 perm/sec)   p_kst 3.040000e-02   p_cons 6.064000e-01   p_joint 6.890000e-02

Joint ci ratio: 1.131092e-01	ci left: 5.343714e-02	ci right 5.989251e-02	k: 1132	n:20000
Cons ci ratio: 2.183535e-02	ci left: 6.102714e-01	ci right 6.237945e-01	k: 12341	n:20000
KS ci ratio: 1.505158e-01	ci left: 3.032647e-02	ci right 3.531057e-02	k: 655	n:20000
GALNTL5   20000 perm   3 sec   (5868 perm/sec)   p_kst 3.275000e-02   p_cons 6.170500e-01   p_joint 5.660000e-02

Joint ci ratio: 9.254171e-02	ci left: 5.381590e-02	ci right 5.907041e-02	k: 1692	n:30000
Cons ci ratio: 1.869989e-02	ci left: 5.886846e-01	ci right 5.998304e-01	k: 17828	n:30000
KS ci ratio: 1.218759e-01	ci left: 3.129835e-02	ci right 3.539267e-02	k: 999	n:30000
GALNTL5   30000 perm   5 sec   (5570 perm/sec)   p_kst 3.330000e-02   p_cons 5.942667e-01   p_joint 5.640000e-02

Joint ci ratio: 7.370158e-02	ci left: 6.361052e-02	ci right 6.850271e-02	k: 2641	n:40000
Cons ci ratio: 1.622553e-02	ci left: 5.885171e-01	ci right 5.981693e-01	k: 23734	n:40000
KS ci ratio: 1.076685e-01	ci left: 3.034547e-02	ci right 3.382290e-02	k: 1282	n:40000
GALNTL5   40000 perm   7 sec   (5398 perm/sec)   p_kst 3.205000e-02   p_cons 5.933500e-01   p_joint 6.602500e-02

Joint ci ratio: 6.728920e-02	ci left: 6.141727e-02	ci right 6.571357e-02	k: 3177	n:50000
Cons ci ratio: 1.433678e-02	ci left: 5.949089e-01	ci right 6.035196e-01	k: 29961	n:50000
KS ci ratio: 9.676250e-02	ci left: 3.024016e-02	ci right 3.333452e-02	k: 1588	n:50000
GALNTL5   50000 perm   10 sec   (5263 perm/sec)   p_kst 3.176000e-02   p_cons 5.992200e-01   p_joint 6.354000e-02

Outputting figure to mutsig2_images.part000000000069/GALNTL5.8_1364_50000_0.03176_0.59922_0.06354.png
                gene_name: GALNTL5
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.066 

Current progress: 7 percent done.
GALNTL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.597175e-02	ci left: 5.329749e-01	ci right 5.526002e-01	k: 5428	n:10000
Cons ci ratio: 2.768949e-02	ci left: 6.577660e-01	ci right 6.763366e-01	k: 6671	n:10000
KS ci ratio: 5.267779e-02	ci left: 3.469066e-01	ci right 3.657772e-01	k: 3563	n:10000
GALNTL6   10000 perm   2 sec   (6051 perm/sec)   p_kst 3.563000e-01   p_cons 6.671000e-01   p_joint 5.428000e-01

Outputting figure to mutsig2_images.part000000000069/GALNTL6.8_1854_10000_0.3563_0.6671_0.5428.png
                gene_name: GALNTL6
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 9 percent done.
GBP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.227486e-02	ci left: 1.773337e-01	ci right 1.926503e-01	k: 1849	n:10000
Cons ci ratio: 1.617042e-01	ci left: 5.099641e-02	ci right 6.006470e-02	k: 554	n:10000
KS ci ratio: 4.198959e-02	ci left: 4.557846e-01	ci right 4.754354e-01	k: 4656	n:10000
GBP7   10000 perm   2 sec   (6045 perm/sec)   p_kst 4.656000e-01   p_cons 5.540000e-02   p_joint 1.849000e-01

Joint ci ratio: 6.206165e-02	ci left: 1.611140e-01	ci right 1.714832e-01	k: 3325	n:20000
Cons ci ratio: 1.136954e-01	ci left: 5.290189e-02	ci right 5.932793e-02	k: 1121	n:20000
KS ci ratio: 2.943825e-02	ci left: 4.629628e-01	ci right 4.768459e-01	k: 9398	n:20000
GBP7   20000 perm   4 sec   (5484 perm/sec)   p_kst 4.699000e-01   p_cons 5.605000e-02   p_joint 1.662500e-01

Joint ci ratio: 5.396640e-02	ci left: 1.455154e-01	ci right 1.536193e-01	k: 4486	n:30000
Cons ci ratio: 9.211004e-02	ci left: 5.430500e-02	ci right 5.958121e-02	k: 1707	n:30000
KS ci ratio: 2.410292e-02	ci left: 4.628732e-01	ci right 4.741995e-01	k: 14056	n:30000
GBP7   30000 perm   6 sec   (5251 perm/sec)   p_kst 4.685333e-01   p_cons 5.690000e-02   p_joint 1.495333e-01

Outputting figure to mutsig2_images.part000000000069/GBP7.8_1957_30000_0.46853_0.0569_0.14953.png
                gene_name: GBP7
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 11 percent done.
GCFC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.517575e-02	ci left: 8.629443e-01	ci right 8.762395e-01	k: 8697	n:10000
Cons ci ratio: 3.853352e-02	ci left: 4.986503e-01	ci right 5.183447e-01	k: 5085	n:10000
KS ci ratio: 1.477842e-02	ci left: 8.689718e-01	ci right 8.820086e-01	k: 8756	n:10000
GCFC1   10000 perm   2 sec   (5704 perm/sec)   p_kst 8.756000e-01   p_cons 5.085000e-01   p_joint 8.697000e-01

Outputting figure to mutsig2_images.part000000000069/GCFC1.8_2944_10000_0.8756_0.5085_0.8697.png
                gene_name: GCFC1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 12 percent done.
GCN1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.492635e-02	ci left: 5.475994e-01	ci right 5.671671e-01	k: 5574	n:10000
Cons ci ratio: 3.589212e-02	ci left: 5.340764e-01	ci right 5.536980e-01	k: 5439	n:10000
KS ci ratio: 3.993788e-02	ci left: 4.807559e-01	ci right 5.004496e-01	k: 4906	n:10000
GCN1L1   10000 perm   2 sec   (4513 perm/sec)   p_kst 4.906000e-01   p_cons 5.439000e-01   p_joint 5.574000e-01

Outputting figure to mutsig2_images.part000000000069/GCN1L1.8_8248_10000_0.4906_0.5439_0.5574.png
                gene_name: GCN1L1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 14 percent done.
GBP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.691682e-02	ci left: 5.200602e-01	ci right 5.397224e-01	k: 5299	n:10000
Cons ci ratio: 1.518912e-02	ci left: 8.627401e-01	ci right 8.760439e-01	k: 8695	n:10000
KS ci ratio: 5.153779e-02	ci left: 3.569465e-01	ci right 3.759313e-01	k: 3664	n:10000
GBP6   10000 perm   2 sec   (6039 perm/sec)   p_kst 3.664000e-01   p_cons 8.695000e-01   p_joint 5.299000e-01

Outputting figure to mutsig2_images.part000000000069/GBP6.7_1942_10000_0.3664_0.8695_0.5299.png
                gene_name: GBP6
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 16 percent done.
GCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.595002e-02	ci left: 5.332753e-01	ci right 5.528996e-01	k: 5431	n:10000
Cons ci ratio: 6.161973e-02	ci left: 2.791374e-01	ci right 2.969862e-01	k: 2880	n:10000
KS ci ratio: 4.737663e-02	ci left: 3.966523e-01	ci right 4.160023e-01	k: 4063	n:10000
GCC2   10000 perm   2 sec   (5242 perm/sec)   p_kst 4.063000e-01   p_cons 2.880000e-01   p_joint 5.431000e-01

Outputting figure to mutsig2_images.part000000000069/GCC2.7_5147_10000_0.4063_0.288_0.5431.png
                gene_name: GCC2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 18 percent done.
GCNT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.426589e-02	ci left: 5.570197e-01	ci right 5.765413e-01	k: 5668	n:10000
Cons ci ratio: 3.204988e-02	ci left: 5.896176e-01	ci right 6.089245e-01	k: 5993	n:10000
KS ci ratio: 5.012518e-02	ci left: 3.698758e-01	ci right 3.889945e-01	k: 3794	n:10000
GCNT4   10000 perm   2 sec   (5599 perm/sec)   p_kst 3.794000e-01   p_cons 5.993000e-01   p_joint 5.668000e-01

Outputting figure to mutsig2_images.part000000000069/GCNT4.7_1366_10000_0.3794_0.5993_0.5668.png
                gene_name: GCNT4
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 19 percent done.
GCOM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.769225e-02	ci left: 3.934654e-01	ci right 4.127911e-01	k: 4031	n:10000
Cons ci ratio: 8.184094e-02	ci left: 1.789079e-01	ci right 1.942751e-01	k: 1865	n:10000
KS ci ratio: 2.514283e-02	ci left: 6.994831e-01	ci right 7.173954e-01	k: 7085	n:10000
GCOM1   10000 perm   2 sec   (6389 perm/sec)   p_kst 7.085000e-01   p_cons 1.865000e-01   p_joint 4.031000e-01

Outputting figure to mutsig2_images.part000000000069/GCOM1.7_1810_10000_0.7085_0.1865_0.4031.png
                gene_name: GCOM1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 21 percent done.
GALNTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.506982e-02	ci left: 7.006935e-01	ci right 7.185842e-01	k: 7097	n:10000
Cons ci ratio: 4.550381e-02	ci left: 4.161812e-01	ci right 4.356620e-01	k: 4259	n:10000
KS ci ratio: 1.886299e-02	ci left: 8.042017e-01	ci right 8.196161e-01	k: 8120	n:10000
GALNTL1   10000 perm   2 sec   (6553 perm/sec)   p_kst 8.120000e-01   p_cons 4.259000e-01   p_joint 7.097000e-01

Outputting figure to mutsig2_images.part000000000069/GALNTL1.5_1737_10000_0.812_0.4259_0.7097.png
                gene_name: GALNTL1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 23 percent done.
GAN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.243266e-02	ci left: 7.447278e-01	ci right 7.617245e-01	k: 7533	n:10000
Cons ci ratio: 1.708612e-01	ci left: 4.571402e-02	ci right 5.435051e-02	k: 499	n:10000
KS ci ratio: 3.472158e-02	ci left: 5.505053e-01	ci right 5.700595e-01	k: 5603	n:10000
GAN   10000 perm   2 sec   (6393 perm/sec)   p_kst 5.603000e-01   p_cons 4.990000e-02   p_joint 7.533000e-01

Joint ci ratio: 4.140201e-02	ci left: 3.030465e-01	ci right 3.159089e-01	k: 6189	n:20000
Cons ci ratio: 1.243277e-01	ci left: 4.439900e-02	ci right 5.033349e-02	k: 946	n:20000
KS ci ratio: 2.461076e-02	ci left: 5.522360e-01	ci right 5.660468e-01	k: 11183	n:20000
GAN   20000 perm   3 sec   (5715 perm/sec)   p_kst 5.591500e-01   p_cons 4.730000e-02   p_joint 3.094500e-01

Joint ci ratio: 3.305496e-02	ci left: 3.138596e-01	ci right 3.244421e-01	k: 9574	n:30000
Cons ci ratio: 1.010851e-01	ci left: 4.531547e-02	ci right 5.017259e-02	k: 1431	n:30000
KS ci ratio: 2.014738e-02	ci left: 5.522247e-01	ci right 5.634974e-01	k: 16736	n:30000
GAN   30000 perm   5 sec   (5513 perm/sec)   p_kst 5.578667e-01   p_cons 4.770000e-02   p_joint 3.191333e-01

Joint ci ratio: 2.947031e-02	ci left: 3.021329e-01	ci right 3.111951e-01	k: 12266	n:40000
Cons ci ratio: 8.769547e-02	ci left: 4.548489e-02	ci right 4.968111e-02	k: 1902	n:40000
KS ci ratio: 1.748697e-02	ci left: 5.518903e-01	ci right 5.616514e-01	k: 22271	n:40000
GAN   40000 perm   7 sec   (5384 perm/sec)   p_kst 5.567750e-01   p_cons 4.755000e-02   p_joint 3.066500e-01

Outputting figure to mutsig2_images.part000000000069/GAN.5_1838_40000_0.55678_0.04755_0.30665.png
                gene_name: GAN
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 25 percent done.
GAPVD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.225664e-02	ci left: 2.749777e-01	ci right 2.927484e-01	k: 2838	n:10000
Cons ci ratio: 1.120740e-02	ci left: 9.191472e-01	ci right 9.296040e-01	k: 9245	n:10000
KS ci ratio: 8.664465e-02	ci left: 1.624881e-01	ci right 1.773047e-01	k: 1698	n:10000
GAPVD1   10000 perm   2 sec   (5430 perm/sec)   p_kst 1.698000e-01   p_cons 9.245000e-01   p_joint 2.838000e-01

Outputting figure to mutsig2_images.part000000000069/GAPVD1.5_4568_10000_0.1698_0.9245_0.2838.png
                gene_name: GAPVD1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 26 percent done.
GAS2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.858267e-01	ci left: 3.863000e-02	ci right 4.663920e-02	k: 425	n:10000
Cons ci ratio: 2.200419e-02	ci left: 7.519090e-01	ci right 7.687391e-01	k: 7604	n:10000
KS ci ratio: 5.003467e-01	ci left: 4.581663e-03	ci right 7.716529e-03	k: 60	n:10000
GAS2L2   10000 perm   2 sec   (6173 perm/sec)   p_kst 6.000000e-03   p_cons 7.604000e-01   p_joint 4.250000e-02

Joint ci ratio: 2.219971e-01	ci left: 1.364464e-02	ci right 1.709835e-02	k: 306	n:20000
Cons ci ratio: 1.550173e-02	ci left: 7.557831e-01	ci right 7.676408e-01	k: 15235	n:20000
KS ci ratio: 3.693575e-01	ci left: 4.567803e-03	ci right 6.679840e-03	k: 111	n:20000
GAS2L2   20000 perm   4 sec   (5556 perm/sec)   p_kst 5.550000e-03   p_cons 7.617500e-01   p_joint 1.530000e-02

Joint ci ratio: 1.606216e-01	ci left: 1.790127e-02	ci right 2.105943e-02	k: 583	n:30000
Cons ci ratio: 1.192388e-02	ci left: 7.780229e-01	ci right 7.873889e-01	k: 23482	n:30000
KS ci ratio: 2.937699e-01	ci left: 5.033948e-03	ci right 6.797138e-03	k: 176	n:30000
GAS2L2   30000 perm   6 sec   (5328 perm/sec)   p_kst 5.866667e-03   p_cons 7.827333e-01   p_joint 1.943333e-02

Joint ci ratio: 1.357340e-01	ci left: 1.903706e-02	ci right 2.183317e-02	k: 816	n:40000
Cons ci ratio: 1.036304e-02	ci left: 7.774427e-01	ci right 7.855664e-01	k: 31261	n:40000
KS ci ratio: 2.501826e-01	ci left: 5.337037e-03	ci right 6.885981e-03	k: 243	n:40000
GAS2L2   40000 perm   8 sec   (5010 perm/sec)   p_kst 6.075000e-03   p_cons 7.815250e-01   p_joint 2.040000e-02

Joint ci ratio: 1.273396e-01	ci left: 1.741439e-02	ci right 1.980197e-02	k: 929	n:50000
Cons ci ratio: 9.873571e-03	ci left: 7.554072e-01	ci right 7.629227e-01	k: 37959	n:50000
KS ci ratio: 2.219476e-01	ci left: 5.511867e-03	ci right 6.906397e-03	k: 309	n:50000
GAS2L2   50000 perm   10 sec   (4901 perm/sec)   p_kst 6.180000e-03   p_cons 7.591800e-01   p_joint 1.858000e-02

Joint ci ratio: 9.677700e-02	ci left: 2.532707e-02	ci right 2.791899e-02	k: 1596	n:60000
Cons ci ratio: 8.643874e-03	ci left: 7.707827e-01	ci right 7.774908e-01	k: 46449	n:60000
KS ci ratio: 1.993989e-01	ci left: 5.761726e-03	ci right 7.053383e-03	k: 383	n:60000
GAS2L2   60000 perm   12 sec   (4816 perm/sec)   p_kst 6.383333e-03   p_cons 7.741500e-01   p_joint 2.660000e-02

Joint ci ratio: 1.153046e-01	ci left: 1.530550e-02	ci right 1.719205e-02	k: 1136	n:70000
Cons ci ratio: 7.988122e-03	ci left: 7.716727e-01	ci right 7.778759e-01	k: 54235	n:70000
KS ci ratio: 1.846077e-01	ci left: 5.809024e-03	ci right 7.003874e-03	k: 447	n:70000
GAS2L2   70000 perm   15 sec   (4687 perm/sec)   p_kst 6.385714e-03   p_cons 7.747857e-01   p_joint 1.622857e-02

Joint ci ratio: 1.038073e-01	ci left: 1.660265e-02	ci right 1.843258e-02	k: 1400	n:80000
Cons ci ratio: 7.464135e-03	ci left: 7.722534e-01	ci right 7.780516e-01	k: 62013	n:80000
KS ci ratio: 1.747580e-01	ci left: 5.703649e-03	ci right 6.807618e-03	k: 499	n:80000
GAS2L2   80000 perm   17 sec   (4601 perm/sec)   p_kst 6.237500e-03   p_cons 7.751625e-01   p_joint 1.750000e-02

Joint ci ratio: 1.091748e-01	ci left: 1.335066e-02	ci right 1.490311e-02	k: 1270	n:90000
Cons ci ratio: 7.023934e-03	ci left: 7.730832e-01	ci right 7.785435e-01	k: 69824	n:90000
KS ci ratio: 1.654307e-01	ci left: 5.686930e-03	ci right 6.723063e-03	k: 557	n:90000
GAS2L2   90000 perm   20 sec   (4530 perm/sec)   p_kst 6.188889e-03   p_cons 7.758222e-01   p_joint 1.411111e-02

Joint ci ratio: 9.440325e-02	ci left: 1.614921e-02	ci right 1.775898e-02	k: 1694	n:100000
Cons ci ratio: 6.672342e-03	ci left: 7.727604e-01	ci right 7.779437e-01	k: 77536	n:100000
KS ci ratio: 1.561828e-01	ci left: 5.770908e-03	ci right 6.758059e-03	k: 625	n:100000
GAS2L2   100000 perm   23 sec   (4403 perm/sec)   p_kst 6.250000e-03   p_cons 7.753600e-01   p_joint 1.694000e-02

Joint ci ratio: 9.041784e-02	ci left: 1.603983e-02	ci right 1.756762e-02	k: 1847	n:110000
Cons ci ratio: 6.363919e-03	ci left: 7.727669e-01	ci right 7.777095e-01	k: 85277	n:110000
KS ci ratio: 1.490889e-01	ci left: 5.779654e-03	ci right 6.719392e-03	k: 686	n:110000
GAS2L2   110000 perm   25 sec   (4339 perm/sec)   p_kst 6.236364e-03   p_cons 7.752455e-01   p_joint 1.679091e-02

Joint ci ratio: 9.275121e-02	ci left: 1.398594e-02	ci right 1.535433e-02	k: 1759	n:120000
Cons ci ratio: 6.102670e-03	ci left: 7.723171e-01	ci right 7.770530e-01	k: 92963	n:120000
KS ci ratio: 1.431706e-01	ci left: 5.763678e-03	ci right 6.660437e-03	k: 744	n:120000
GAS2L2   120000 perm   28 sec   (4260 perm/sec)   p_kst 6.200000e-03   p_cons 7.746917e-01   p_joint 1.465833e-02

Joint ci ratio: 8.199647e-02	ci left: 1.656801e-02	ci right 1.799210e-02	k: 2245	n:130000
Cons ci ratio: 5.876550e-03	ci left: 7.716162e-01	ci right 7.761716e-01	k: 100607	n:130000
KS ci ratio: 1.367956e-01	ci left: 5.847367e-03	ci right 6.713339e-03	k: 815	n:130000
GAS2L2   130000 perm   31 sec   (4188 perm/sec)   p_kst 6.269231e-03   p_cons 7.739000e-01   p_joint 1.726923e-02

Joint ci ratio: 8.035567e-02	ci left: 1.604220e-02	ci right 1.739221e-02	k: 2339	n:140000
Cons ci ratio: 5.665906e-03	ci left: 7.715061e-01	ci right 7.758969e-01	k: 108319	n:140000
KS ci ratio: 1.318021e-01	ci left: 5.864585e-03	ci right 6.698919e-03	k: 878	n:140000
GAS2L2   140000 perm   34 sec   (4133 perm/sec)   p_kst 6.271429e-03   p_cons 7.737071e-01   p_joint 1.670714e-02

Joint ci ratio: 7.892373e-02	ci left: 1.554101e-02	ci right 1.682446e-02	k: 2426	n:150000
Cons ci ratio: 5.477544e-03	ci left: 7.713397e-01	ci right 7.755830e-01	k: 116020	n:150000
KS ci ratio: 1.271826e-01	ci left: 5.892916e-03	ci right 6.699680e-03	k: 943	n:150000
GAS2L2   150000 perm   37 sec   (4078 perm/sec)   p_kst 6.286667e-03   p_cons 7.734667e-01   p_joint 1.617333e-02

Joint ci ratio: 7.668600e-02	ci left: 1.545216e-02	ci right 1.669047e-02	k: 2570	n:160000
Cons ci ratio: 5.302442e-03	ci left: 7.714849e-01	ci right 7.755927e-01	k: 123767	n:160000
KS ci ratio: 1.235108e-01	ci left: 5.869684e-03	ci right 6.648370e-03	k: 1000	n:160000
GAS2L2   160000 perm   40 sec   (4027 perm/sec)   p_kst 6.250000e-03   p_cons 7.735437e-01   p_joint 1.606250e-02

Joint ci ratio: 7.229573e-02	ci left: 1.638502e-02	ci right 1.761976e-02	k: 2889	n:170000
Cons ci ratio: 5.150985e-03	ci left: 7.710779e-01	ci right 7.750658e-01	k: 131423	n:170000
KS ci ratio: 1.196852e-01	ci left: 5.895137e-03	ci right 6.651261e-03	k: 1065	n:170000
GAS2L2   170000 perm   43 sec   (3976 perm/sec)   p_kst 6.264706e-03   p_cons 7.730765e-01   p_joint 1.699412e-02

Joint ci ratio: 7.847652e-02	ci left: 1.313537e-02	ci right 1.421371e-02	k: 2460	n:180000
Cons ci ratio: 5.002906e-03	ci left: 7.713419e-01	ci right 7.752160e-01	k: 139191	n:180000
KS ci ratio: 1.160395e-01	ci left: 5.934277e-03	ci right 6.670648e-03	k: 1133	n:180000
GAS2L2   180000 perm   46 sec   (3923 perm/sec)   p_kst 6.294444e-03   p_cons 7.732833e-01   p_joint 1.366667e-02

Joint ci ratio: 6.517412e-02	ci left: 1.807490e-02	ci right 1.929775e-02	k: 3549	n:190000
Cons ci ratio: 4.874868e-03	ci left: 7.710041e-01	ci right 7.747770e-01	k: 146850	n:190000
KS ci ratio: 1.128024e-01	ci left: 5.959379e-03	ci right 6.676862e-03	k: 1199	n:190000
GAS2L2   190000 perm   49 sec   (3872 perm/sec)   p_kst 6.310526e-03   p_cons 7.728947e-01   p_joint 1.867895e-02

Joint ci ratio: 5.912615e-02	ci left: 2.086877e-02	ci right 2.214515e-02	k: 4300	n:200000
Cons ci ratio: 4.851093e-03	ci left: 7.636619e-01	ci right 7.673804e-01	k: 153105	n:200000
KS ci ratio: 1.099094e-01	ci left: 5.972499e-03	ci right 6.671926e-03	k: 1263	n:200000
GAS2L2   200000 perm   52 sec   (3825 perm/sec)   p_kst 6.315000e-03   p_cons 7.655250e-01   p_joint 2.150000e-02

Joint ci ratio: 5.866465e-02	ci left: 2.020793e-02	ci right 2.143392e-02	k: 4371	n:210000
Cons ci ratio: 4.739347e-03	ci left: 7.633142e-01	ci right 7.669451e-01	k: 160678	n:210000
KS ci ratio: 1.069851e-01	ci left: 6.012393e-03	ci right 6.696578e-03	k: 1333	n:210000
GAS2L2   210000 perm   56 sec   (3774 perm/sec)   p_kst 6.347619e-03   p_cons 7.651333e-01   p_joint 2.081429e-02

Joint ci ratio: 6.321706e-02	ci left: 1.663395e-02	ci right 1.772428e-02	k: 3778	n:220000
Cons ci ratio: 4.634793e-03	ci left: 7.630129e-01	ci right 7.665620e-01	k: 168254	n:220000
KS ci ratio: 1.050763e-01	ci left: 5.955914e-03	ci right 6.620831e-03	k: 1382	n:220000
GAS2L2   220000 perm   59 sec   (3726 perm/sec)   p_kst 6.281818e-03   p_cons 7.647909e-01   p_joint 1.717273e-02

Joint ci ratio: 5.617825e-02	ci left: 2.014773e-02	ci right 2.131657e-02	k: 4767	n:230000
Cons ci ratio: 4.533734e-03	ci left: 7.629871e-01	ci right 7.664584e-01	k: 175887	n:230000
KS ci ratio: 1.030490e-01	ci left: 5.929863e-03	ci right 6.578326e-03	k: 1437	n:230000
GAS2L2   230000 perm   63 sec   (3680 perm/sec)   p_kst 6.247826e-03   p_cons 7.647261e-01   p_joint 2.072609e-02

Joint ci ratio: 5.900429e-02	ci left: 1.752522e-02	ci right 1.859480e-02	k: 4333	n:240000
Cons ci ratio: 4.438598e-03	ci left: 7.629977e-01	ci right 7.663959e-01	k: 183528	n:240000
KS ci ratio: 1.010666e-01	ci left: 5.914221e-03	ci right 6.547793e-03	k: 1494	n:240000
GAS2L2   240000 perm   66 sec   (3633 perm/sec)   p_kst 6.225000e-03   p_cons 7.647000e-01   p_joint 1.805417e-02

Joint ci ratio: 5.931916e-02	ci left: 1.665847e-02	ci right 1.768076e-02	k: 4291	n:250000
Cons ci ratio: 4.347277e-03	ci left: 7.631685e-01	ci right 7.664974e-01	k: 191209	n:250000
KS ci ratio: 9.877895e-02	ci left: 5.950660e-03	ci right 6.572870e-03	k: 1564	n:250000
GAS2L2   250000 perm   70 sec   (3583 perm/sec)   p_kst 6.256000e-03   p_cons 7.648360e-01   p_joint 1.716400e-02

Outputting figure to mutsig2_images.part000000000069/GAS2L2.5_2667_250000_0.006256_0.76484_0.017164.png
                gene_name: GAS2L2
               theta_stop: 0.099 
                    nperm: 250000 
                     p_ks: 0.0063 
        ci_ks_bounds_left: 0.0060 
       ci_ks_bounds_right: 0.0066 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.018 

Current progress: 28 percent done.
GAS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.242904e-01	ci left: 1.206533e-02	ci right 1.682370e-02	k: 143	n:10000
Cons ci ratio: 2.702786e-01	ci left: 1.781300e-02	ci right 2.347108e-02	k: 205	n:10000
KS ci ratio: 5.474812e-01	ci left: 3.713306e-03	ci right 6.586626e-03	k: 50	n:10000
GAS7   10000 perm   2 sec   (6605 perm/sec)   p_kst 5.000000e-03   p_cons 2.050000e-02   p_joint 1.430000e-02

Joint ci ratio: 3.325311e-01	ci left: 5.754049e-03	ci right 8.092762e-03	k: 137	n:20000
Cons ci ratio: 1.897147e-01	ci left: 1.891468e-02	ci right 2.292630e-02	k: 417	n:20000
KS ci ratio: 3.779363e-01	ci left: 4.341185e-03	ci right 6.406636e-03	k: 106	n:20000
GAS7   20000 perm   3 sec   (5938 perm/sec)   p_kst 5.300000e-03   p_cons 2.085000e-02   p_joint 6.850000e-03

Joint ci ratio: 4.819796e-01	ci left: 1.672573e-03	ci right 2.760773e-03	k: 65	n:30000
Cons ci ratio: 1.559217e-01	ci left: 1.902257e-02	ci right 2.227119e-02	k: 618	n:30000
KS ci ratio: 3.140424e-01	ci left: 4.356227e-03	ci right 6.008502e-03	k: 154	n:30000
GAS7   30000 perm   5 sec   (5571 perm/sec)   p_kst 5.133333e-03   p_cons 2.060000e-02   p_joint 2.166667e-03

Joint ci ratio: 4.324423e-01	ci left: 1.608458e-03	ci right 2.516271e-03	k: 81	n:40000
Cons ci ratio: 1.364174e-01	ci left: 1.884374e-02	ci right 2.162653e-02	k: 808	n:40000
KS ci ratio: 2.685090e-01	ci left: 4.588736e-03	ci right 6.034512e-03	k: 211	n:40000
GAS7   40000 perm   7 sec   (5421 perm/sec)   p_kst 5.275000e-03   p_cons 2.020000e-02   p_joint 2.025000e-03

Joint ci ratio: 3.877379e-01	ci left: 1.645615e-03	ci right 2.453950e-03	k: 101	n:50000
Cons ci ratio: 1.222163e-01	ci left: 1.892659e-02	ci right 2.140956e-02	k: 1007	n:50000
KS ci ratio: 2.420054e-01	ci left: 4.588444e-03	ci right 5.870034e-03	k: 260	n:50000
GAS7   50000 perm   9 sec   (5302 perm/sec)   p_kst 5.200000e-03   p_cons 2.014000e-02   p_joint 2.020000e-03

Joint ci ratio: 2.129337e-01	ci left: 5.018582e-03	ci right 6.229991e-03	k: 336	n:60000
Cons ci ratio: 1.113146e-01	ci left: 1.912166e-02	ci right 2.139175e-02	k: 1214	n:60000
KS ci ratio: 2.224242e-01	ci left: 4.577230e-03	ci right 5.738094e-03	k: 308	n:60000
GAS7   60000 perm   12 sec   (5195 perm/sec)   p_kst 5.133333e-03   p_cons 2.023333e-02   p_joint 5.600000e-03

Joint ci ratio: 2.008096e-01	ci left: 4.870542e-03	ci right 5.971067e-03	k: 378	n:70000
Cons ci ratio: 1.034491e-01	ci left: 1.905921e-02	ci right 2.115226e-02	k: 1406	n:70000
KS ci ratio: 2.069372e-01	ci left: 4.572224e-03	ci right 5.640860e-03	k: 356	n:70000
GAS7   70000 perm   14 sec   (5091 perm/sec)   p_kst 5.085714e-03   p_cons 2.008571e-02   p_joint 5.400000e-03

Joint ci ratio: 1.977566e-01	ci left: 4.404131e-03	ci right 5.382305e-03	k: 390	n:80000
Cons ci ratio: 9.726288e-02	ci left: 1.893123e-02	ci right 2.087880e-02	k: 1591	n:80000
KS ci ratio: 1.919243e-01	ci left: 4.689564e-03	ci right 5.696833e-03	k: 414	n:80000
GAS7   80000 perm   16 sec   (5000 perm/sec)   p_kst 5.175000e-03   p_cons 1.988750e-02   p_joint 4.875000e-03

Joint ci ratio: 1.885860e-01	ci left: 4.327151e-03	ci right 5.238552e-03	k: 429	n:90000
Cons ci ratio: 9.159608e-02	ci left: 1.903012e-02	ci right 2.086767e-02	k: 1794	n:90000
KS ci ratio: 1.829027e-01	ci left: 4.613265e-03	ci right 5.552404e-03	k: 456	n:90000
GAS7   90000 perm   18 sec   (4909 perm/sec)   p_kst 5.066667e-03   p_cons 1.993333e-02   p_joint 4.766667e-03

Joint ci ratio: 1.447544e-01	ci left: 6.752792e-03	ci right 7.816087e-03	k: 727	n:100000
Cons ci ratio: 8.652998e-02	ci left: 1.923910e-02	ci right 2.098889e-02	k: 2010	n:100000
KS ci ratio: 1.734787e-01	ci left: 4.639208e-03	ci right 5.529871e-03	k: 507	n:100000
GAS7   100000 perm   21 sec   (4821 perm/sec)   p_kst 5.070000e-03   p_cons 2.010000e-02   p_joint 7.270000e-03

Joint ci ratio: 1.396791e-01	ci left: 6.612311e-03	ci right 7.613940e-03	k: 781	n:110000
Cons ci ratio: 8.275355e-02	ci left: 1.916298e-02	ci right 2.082610e-02	k: 2198	n:110000
KS ci ratio: 1.627624e-01	ci left: 4.818398e-03	ci right 5.680731e-03	k: 576	n:110000
GAS7   110000 perm   23 sec   (4741 perm/sec)   p_kst 5.236364e-03   p_cons 1.998182e-02   p_joint 7.100000e-03

Joint ci ratio: 1.407205e-01	ci left: 5.972694e-03	ci right 6.884739e-03	k: 770	n:120000
Cons ci ratio: 7.906101e-02	ci left: 1.928071e-02	ci right 2.087593e-02	k: 2408	n:120000
KS ci ratio: 1.557654e-01	ci left: 4.840939e-03	ci right 5.666582e-03	k: 629	n:120000
GAS7   120000 perm   26 sec   (4661 perm/sec)   p_kst 5.241667e-03   p_cons 2.006667e-02   p_joint 6.416667e-03

Joint ci ratio: 2.841777e-01	ci left: 1.254076e-03	ci right 1.676356e-03	k: 189	n:130000
Cons ci ratio: 7.233378e-02	ci left: 2.129258e-02	ci right 2.289807e-02	k: 2871	n:130000
KS ci ratio: 1.495995e-01	ci left: 4.860682e-03	ci right 5.653940e-03	k: 682	n:130000
GAS7   130000 perm   28 sec   (4585 perm/sec)   p_kst 5.246154e-03   p_cons 2.208462e-02   p_joint 1.453846e-03

Joint ci ratio: 2.762959e-01	ci left: 1.237549e-03	ci right 1.640697e-03	k: 200	n:140000
Cons ci ratio: 6.969019e-02	ci left: 2.132925e-02	ci right 2.287634e-02	k: 3093	n:140000
KS ci ratio: 1.440140e-01	ci left: 4.885044e-03	ci right 5.649952e-03	k: 736	n:140000
GAS7   140000 perm   31 sec   (4513 perm/sec)   p_kst 5.257143e-03   p_cons 2.209286e-02   p_joint 1.428571e-03

Joint ci ratio: 2.911945e-01	ci left: 1.031176e-03	ci right 1.388553e-03	k: 180	n:150000
Cons ci ratio: 6.722352e-02	ci left: 2.142097e-02	ci right 2.291758e-02	k: 3324	n:150000
KS ci ratio: 1.387465e-01	ci left: 4.925943e-03	ci right 5.666711e-03	k: 793	n:150000
GAS7   150000 perm   34 sec   (4408 perm/sec)   p_kst 5.286667e-03   p_cons 2.216000e-02   p_joint 1.200000e-03

Joint ci ratio: 2.819967e-01	ci left: 1.036339e-03	ci right 1.382144e-03	k: 192	n:160000
Cons ci ratio: 6.527423e-02	ci left: 2.132371e-02	ci right 2.276868e-02	k: 3526	n:160000
KS ci ratio: 1.348969e-01	ci left: 4.895725e-03	ci right 5.609883e-03	k: 839	n:160000
GAS7   160000 perm   37 sec   (4336 perm/sec)   p_kst 5.243750e-03   p_cons 2.203750e-02   p_joint 1.200000e-03

Joint ci ratio: 2.749649e-01	ci left: 1.030094e-03	ci right 1.363762e-03	k: 202	n:170000
Cons ci ratio: 6.331182e-02	ci left: 2.135427e-02	ci right 2.275621e-02	k: 3748	n:170000
KS ci ratio: 1.314255e-01	ci left: 4.863624e-03	ci right 5.553416e-03	k: 884	n:170000
GAS7   170000 perm   40 sec   (4274 perm/sec)   p_kst 5.200000e-03   p_cons 2.204706e-02   p_joint 1.188235e-03

Joint ci ratio: 2.784282e-01	ci left: 9.470097e-04	ci right 1.258306e-03	k: 197	n:180000
Cons ci ratio: 6.142156e-02	ci left: 2.144768e-02	ci right 2.281221e-02	k: 3982	n:180000
KS ci ratio: 1.285569e-01	ci left: 4.808409e-03	ci right 5.474348e-03	k: 924	n:180000
GAS7   180000 perm   43 sec   (4212 perm/sec)   p_kst 5.133333e-03   p_cons 2.212222e-02   p_joint 1.094444e-03

Joint ci ratio: 2.703555e-01	ci left: 9.559813e-04	ci right 1.259571e-03	k: 209	n:190000
Cons ci ratio: 5.977084e-02	ci left: 2.147476e-02	ci right 2.280303e-02	k: 4205	n:190000
KS ci ratio: 1.252176e-01	ci left: 4.810141e-03	ci right 5.457731e-03	k: 974	n:190000
GAS7   190000 perm   46 sec   (4140 perm/sec)   p_kst 5.126316e-03   p_cons 2.213158e-02   p_joint 1.100000e-03

Joint ci ratio: 2.813024e-01	ci left: 8.337051e-04	ci right 1.111087e-03	k: 193	n:200000
Cons ci ratio: 5.808570e-02	ci left: 2.161787e-02	ci right 2.291602e-02	k: 4452	n:200000
KS ci ratio: 1.215904e-01	ci left: 4.855535e-03	ci right 5.488938e-03	k: 1033	n:200000
GAS7   200000 perm   49 sec   (4083 perm/sec)   p_kst 5.165000e-03   p_cons 2.226000e-02   p_joint 9.650000e-04

Joint ci ratio: 2.813089e-01	ci left: 7.940024e-04	ci right 1.058182e-03	k: 193	n:210000
Cons ci ratio: 5.671470e-02	ci left: 2.161164e-02	ci right 2.287778e-02	k: 4670	n:210000
KS ci ratio: 1.192522e-01	ci left: 4.813670e-03	ci right 5.428684e-03	k: 1074	n:210000
GAS7   210000 perm   52 sec   (4027 perm/sec)   p_kst 5.114286e-03   p_cons 2.223810e-02   p_joint 9.190476e-04

Joint ci ratio: 2.827775e-01	ci left: 7.494609e-04	ci right 1.000354e-03	k: 191	n:220000
Cons ci ratio: 5.548285e-02	ci left: 2.157044e-02	ci right 2.280583e-02	k: 4880	n:220000
KS ci ratio: 1.163646e-01	ci left: 4.833091e-03	ci right 5.434607e-03	k: 1128	n:220000
GAS7   220000 perm   56 sec   (3952 perm/sec)   p_kst 5.127273e-03   p_cons 2.218182e-02   p_joint 8.681818e-04

Joint ci ratio: 2.182996e-01	ci left: 1.247224e-03	ci right 1.556864e-03	k: 321	n:230000
Cons ci ratio: 5.444286e-02	ci left: 2.144300e-02	ci right 2.264735e-02	k: 5069	n:230000
KS ci ratio: 1.137738e-01	ci left: 4.842537e-03	ci right 5.430909e-03	k: 1180	n:230000
GAS7   230000 perm   59 sec   (3894 perm/sec)   p_kst 5.130435e-03   p_cons 2.203913e-02   p_joint 1.395652e-03

Joint ci ratio: 2.166283e-01	ci left: 1.214953e-03	ci right 1.513964e-03	k: 326	n:240000
Cons ci ratio: 5.333491e-02	ci left: 2.142507e-02	ci right 2.260318e-02	k: 5282	n:240000
KS ci ratio: 1.113487e-01	ci left: 4.851333e-03	ci right 5.427385e-03	k: 1232	n:240000
GAS7   240000 perm   63 sec   (3836 perm/sec)   p_kst 5.133333e-03   p_cons 2.200833e-02   p_joint 1.358333e-03

Joint ci ratio: 2.140285e-01	ci left: 1.196628e-03	ci right 1.487131e-03	k: 334	n:250000
Cons ci ratio: 5.236506e-02	ci left: 2.134958e-02	ci right 2.250154e-02	k: 5480	n:250000
KS ci ratio: 1.083124e-01	ci left: 4.929599e-03	ci right 5.497965e-03	k: 1302	n:250000
GAS7   250000 perm   66 sec   (3771 perm/sec)   p_kst 5.208000e-03   p_cons 2.192000e-02   p_joint 1.336000e-03

Joint ci ratio: 1.586600e-01	ci left: 2.156446e-03	ci right 2.531708e-03	k: 608	n:260000
Cons ci ratio: 5.386704e-02	ci left: 1.942355e-02	ci right 2.050257e-02	k: 5189	n:260000
KS ci ratio: 1.063322e-01	ci left: 4.923401e-03	ci right 5.480024e-03	k: 1351	n:260000
GAS7   260000 perm   70 sec   (3726 perm/sec)   p_kst 5.196154e-03   p_cons 1.995769e-02   p_joint 2.338462e-03

Joint ci ratio: 1.606622e-01	ci left: 2.023230e-03	ci right 2.380182e-03	k: 593	n:270000
Cons ci ratio: 5.270374e-02	ci left: 1.954835e-02	ci right 2.061014e-02	k: 5420	n:270000
KS ci ratio: 1.047201e-01	ci left: 4.892498e-03	ci right 5.436725e-03	k: 1393	n:270000
GAS7   270000 perm   73 sec   (3680 perm/sec)   p_kst 5.159259e-03   p_cons 2.007407e-02   p_joint 2.196296e-03

Joint ci ratio: 1.588040e-01	ci left: 1.998971e-03	ci right 2.347176e-03	k: 607	n:280000
Cons ci ratio: 5.173422e-02	ci left: 1.957278e-02	ci right 2.061576e-02	k: 5625	n:280000
KS ci ratio: 1.031430e-01	ci left: 4.867342e-03	ci right 5.400123e-03	k: 1436	n:280000
GAS7   280000 perm   77 sec   (3634 perm/sec)   p_kst 5.128571e-03   p_cons 2.008929e-02   p_joint 2.167857e-03

Joint ci ratio: 1.593361e-01	ci left: 1.916791e-03	ci right 2.251905e-03	k: 603	n:290000
Cons ci ratio: 5.080298e-02	ci left: 1.960591e-02	ci right 2.063130e-02	k: 5833	n:290000
KS ci ratio: 1.011553e-01	ci left: 4.891036e-03	ci right 5.415480e-03	k: 1493	n:290000
GAS7   290000 perm   81 sec   (3593 perm/sec)   p_kst 5.148276e-03   p_cons 2.011379e-02   p_joint 2.079310e-03

Joint ci ratio: 1.568881e-01	ci left: 1.913725e-03	ci right 2.242679e-03	k: 622	n:300000
Cons ci ratio: 4.994982e-02	ci left: 1.961394e-02	ci right 2.062202e-02	k: 6034	n:300000
KS ci ratio: 9.956900e-02	ci left: 4.883984e-03	ci right 5.398980e-03	k: 1541	n:300000
GAS7   300000 perm   84 sec   (3551 perm/sec)   p_kst 5.136667e-03   p_cons 2.011333e-02   p_joint 2.073333e-03

Joint ci ratio: 1.596118e-01	ci left: 1.786923e-03	ci right 2.099924e-03	k: 601	n:310000
Cons ci ratio: 4.910611e-02	ci left: 1.964709e-02	ci right 2.063933e-02	k: 6243	n:310000
KS ci ratio: 9.793136e-02	ci left: 4.890036e-03	ci right 5.396702e-03	k: 1593	n:310000
GAS7   310000 perm   88 sec   (3510 perm/sec)   p_kst 5.138710e-03   p_cons 2.013871e-02   p_joint 1.938710e-03

Joint ci ratio: 1.567723e-01	ci left: 1.797111e-03	ci right 2.105770e-03	k: 623	n:320000
Cons ci ratio: 4.831522e-02	ci left: 1.966903e-02	ci right 2.064594e-02	k: 6449	n:320000
KS ci ratio: 9.654899e-02	ci left: 4.877475e-03	ci right 5.375302e-03	k: 1639	n:320000
GAS7   320000 perm   92 sec   (3467 perm/sec)   p_kst 5.121875e-03   p_cons 2.015313e-02   p_joint 1.946875e-03

Joint ci ratio: 1.674679e-01	ci left: 1.518757e-03	ci right 1.799201e-03	k: 546	n:330000
Cons ci ratio: 4.757595e-02	ci left: 1.967778e-02	ci right 2.063976e-02	k: 6651	n:330000
KS ci ratio: 9.494096e-02	ci left: 4.895309e-03	ci right 5.386171e-03	k: 1695	n:330000
GAS7   330000 perm   96 sec   (3427 perm/sec)   p_kst 5.136364e-03   p_cons 2.015455e-02   p_joint 1.654545e-03

Joint ci ratio: 1.671662e-01	ci left: 1.479721e-03	ci right 1.752415e-03	k: 548	n:340000
Cons ci ratio: 4.688706e-02	ci left: 1.967159e-02	ci right 2.061897e-02	k: 6848	n:340000
KS ci ratio: 9.346432e-02	ci left: 4.906412e-03	ci right 5.390317e-03	k: 1749	n:340000
GAS7   340000 perm   101 sec   (3379 perm/sec)   p_kst 5.144118e-03   p_cons 2.014118e-02   p_joint 1.611765e-03

Joint ci ratio: 2.183522e-01	ci left: 8.195842e-04	ci right 1.023110e-03	k: 321	n:350000
Cons ci ratio: 4.617044e-02	ci left: 1.971387e-02	ci right 2.064838e-02	k: 7062	n:350000
KS ci ratio: 9.187550e-02	ci left: 4.936479e-03	ci right 5.414627e-03	k: 1810	n:350000
GAS7   350000 perm   105 sec   (3339 perm/sec)   p_kst 5.171429e-03   p_cons 2.017714e-02   p_joint 9.171429e-04

Joint ci ratio: 1.612513e-01	ci left: 1.506726e-03	ci right 1.773620e-03	k: 589	n:360000
Cons ci ratio: 4.554003e-02	ci left: 1.970721e-02	ci right 2.062832e-02	k: 7259	n:360000
KS ci ratio: 9.070662e-02	ci left: 4.926928e-03	ci right 5.397758e-03	k: 1857	n:360000
GAS7   360000 perm   109 sec   (3300 perm/sec)   p_kst 5.158333e-03   p_cons 2.016389e-02   p_joint 1.636111e-03

Joint ci ratio: 1.584550e-01	ci left: 1.520491e-03	ci right 1.784709e-03	k: 610	n:370000
Cons ci ratio: 4.499637e-02	ci left: 1.964753e-02	ci right 2.055460e-02	k: 7436	n:370000
KS ci ratio: 8.967593e-02	ci left: 4.907360e-03	ci right 5.370712e-03	k: 1900	n:370000
GAS7   370000 perm   113 sec   (3264 perm/sec)   p_kst 5.135135e-03   p_cons 2.009730e-02   p_joint 1.648649e-03

Joint ci ratio: 1.576849e-01	ci left: 1.495642e-03	ci right 1.754158e-03	k: 616	n:380000
Cons ci ratio: 4.437370e-02	ci left: 1.967695e-02	ci right 2.057249e-02	k: 7646	n:380000
KS ci ratio: 8.845120e-02	ci left: 4.914587e-03	ci right 5.371956e-03	k: 1953	n:380000
GAS7   380000 perm   118 sec   (3229 perm/sec)   p_kst 5.139474e-03   p_cons 2.012105e-02   p_joint 1.621053e-03

Joint ci ratio: 1.612615e-01	ci left: 1.390818e-03	ci right 1.637197e-03	k: 589	n:390000
Cons ci ratio: 4.375345e-02	ci left: 1.972524e-02	ci right 2.061011e-02	k: 7864	n:390000
KS ci ratio: 8.718803e-02	ci left: 4.931518e-03	ci right 5.383575e-03	k: 2010	n:390000
GAS7   390000 perm   122 sec   (3194 perm/sec)   p_kst 5.153846e-03   p_cons 2.016410e-02   p_joint 1.510256e-03

Joint ci ratio: 1.593819e-01	ci left: 1.389643e-03	ci right 1.632670e-03	k: 603	n:400000
Cons ci ratio: 4.320489e-02	ci left: 1.972915e-02	ci right 2.060282e-02	k: 8065	n:400000
KS ci ratio: 8.618719e-02	ci left: 4.923182e-03	ci right 5.369033e-03	k: 2057	n:400000
GAS7   400000 perm   127 sec   (3159 perm/sec)   p_kst 5.142500e-03   p_cons 2.016250e-02   p_joint 1.507500e-03

Joint ci ratio: 1.566803e-01	ci left: 1.404944e-03	ci right 1.646091e-03	k: 624	n:410000
Cons ci ratio: 4.269228e-02	ci left: 1.971845e-02	ci right 2.058103e-02	k: 8260	n:410000
KS ci ratio: 8.501730e-02	ci left: 4.939154e-03	ci right 5.380079e-03	k: 2114	n:410000
GAS7   410000 perm   131 sec   (3123 perm/sec)   p_kst 5.156098e-03   p_cons 2.014634e-02   p_joint 1.521951e-03

Joint ci ratio: 1.541115e-01	ci left: 1.419550e-03	ci right 1.658840e-03	k: 645	n:420000
Cons ci ratio: 4.210358e-02	ci left: 1.979550e-02	ci right 2.064923e-02	k: 8492	n:420000
KS ci ratio: 8.391320e-02	ci left: 4.952073e-03	ci right 5.388129e-03	k: 2170	n:420000
GAS7   420000 perm   136 sec   (3089 perm/sec)   p_kst 5.166667e-03   p_cons 2.021905e-02   p_joint 1.535714e-03

Joint ci ratio: 1.604580e-01	ci left: 1.274825e-03	ci right 1.499422e-03	k: 595	n:430000
Cons ci ratio: 4.158237e-02	ci left: 1.982762e-02	ci right 2.067189e-02	k: 8706	n:430000
KS ci ratio: 8.294468e-02	ci left: 4.953039e-03	ci right 5.383903e-03	k: 2221	n:430000
GAS7   430000 perm   141 sec   (3057 perm/sec)   p_kst 5.165116e-03   p_cons 2.024651e-02   p_joint 1.383721e-03

Joint ci ratio: 1.589979e-01	ci left: 1.269852e-03	ci right 1.491343e-03	k: 606	n:440000
Cons ci ratio: 4.109886e-02	ci left: 1.984033e-02	ci right 2.067509e-02	k: 8912	n:440000
KS ci ratio: 8.200894e-02	ci left: 4.953988e-03	ci right 5.379840e-03	k: 2272	n:440000
GAS7   440000 perm   145 sec   (3025 perm/sec)   p_kst 5.163636e-03   p_cons 2.025455e-02   p_joint 1.377273e-03

Joint ci ratio: 1.578330e-01	ci left: 1.260840e-03	ci right 1.478995e-03	k: 615	n:450000
Cons ci ratio: 4.062956e-02	ci left: 1.985474e-02	ci right 2.068034e-02	k: 9119	n:450000
KS ci ratio: 8.120961e-02	ci left: 4.941858e-03	ci right 5.362330e-03	k: 2317	n:450000
GAS7   450000 perm   150 sec   (2995 perm/sec)   p_kst 5.148889e-03   p_cons 2.026444e-02   p_joint 1.366667e-03

Joint ci ratio: 1.558219e-01	ci left: 1.266848e-03	ci right 1.482989e-03	k: 631	n:460000
Cons ci ratio: 4.018698e-02	ci left: 1.985781e-02	ci right 2.067434e-02	k: 9321	n:460000
KS ci ratio: 8.029670e-02	ci left: 4.947317e-03	ci right 5.363301e-03	k: 2370	n:460000
GAS7   460000 perm   155 sec   (2965 perm/sec)   p_kst 5.152174e-03   p_cons 2.026304e-02   p_joint 1.371739e-03

Joint ci ratio: 1.584829e-01	ci left: 1.196967e-03	ci right 1.405004e-03	k: 610	n:470000
Cons ci ratio: 3.978841e-02	ci left: 1.983130e-02	ci right 2.063846e-02	k: 9509	n:470000
KS ci ratio: 7.946333e-02	ci left: 4.946313e-03	ci right 5.357696e-03	k: 2420	n:470000
GAS7   470000 perm   160 sec   (2933 perm/sec)   p_kst 5.148936e-03   p_cons 2.023191e-02   p_joint 1.297872e-03

Joint ci ratio: 1.569494e-01	ci left: 1.196043e-03	ci right 1.401719e-03	k: 622	n:480000
Cons ci ratio: 3.937661e-02	ci left: 1.983069e-02	ci right 2.062928e-02	k: 9709	n:480000
KS ci ratio: 7.855958e-02	ci left: 4.957627e-03	ci right 5.365048e-03	k: 2476	n:480000
GAS7   480000 perm   166 sec   (2900 perm/sec)   p_kst 5.158333e-03   p_cons 2.022708e-02   p_joint 1.295833e-03

Joint ci ratio: 1.629541e-01	ci left: 1.083467e-03	ci right 1.277611e-03	k: 577	n:490000
Cons ci ratio: 3.900747e-02	ci left: 1.979983e-02	ci right 2.058954e-02	k: 9894	n:490000
KS ci ratio: 7.767056e-02	ci left: 4.970507e-03	ci right 5.374154e-03	k: 2533	n:490000
GAS7   490000 perm   171 sec   (2870 perm/sec)   p_kst 5.169388e-03   p_cons 2.019184e-02   p_joint 1.177551e-03

Joint ci ratio: 1.679770e-01	ci left: 9.966088e-04	ci right 1.181251e-03	k: 543	n:500000
Cons ci ratio: 3.863093e-02	ci left: 1.978806e-02	ci right 2.056951e-02	k: 10088	n:500000
KS ci ratio: 7.691557e-02	ci left: 4.969164e-03	ci right 5.368603e-03	k: 2583	n:500000
GAS7   500000 perm   176 sec   (2842 perm/sec)   p_kst 5.166000e-03   p_cons 2.017600e-02   p_joint 1.086000e-03

Joint ci ratio: 1.681336e-01	ci left: 9.751882e-04	ci right 1.156047e-03	k: 542	n:510000
Cons ci ratio: 3.828409e-02	ci left: 1.975737e-02	ci right 2.053045e-02	k: 10272	n:510000
KS ci ratio: 7.615312e-02	ci left: 4.971739e-03	ci right 5.367248e-03	k: 2635	n:510000
GAS7   510000 perm   181 sec   (2812 perm/sec)   p_kst 5.166667e-03   p_cons 2.014118e-02   p_joint 1.062745e-03

Joint ci ratio: 1.667575e-01	ci left: 9.730169e-04	ci right 1.151848e-03	k: 551	n:520000
Cons ci ratio: 3.795939e-02	ci left: 1.971455e-02	ci right 2.047927e-02	k: 10449	n:520000
KS ci ratio: 7.534249e-02	ci left: 4.983668e-03	ci right 5.375722e-03	k: 2692	n:520000
GAS7   520000 perm   187 sec   (2785 perm/sec)   p_kst 5.176923e-03   p_cons 2.009423e-02   p_joint 1.059615e-03

Joint ci ratio: 1.321838e-01	ci left: 1.547082e-03	ci right 1.767857e-03	k: 877	n:530000
Cons ci ratio: 3.761393e-02	ci left: 1.970329e-02	ci right 2.046046e-02	k: 10642	n:530000
KS ci ratio: 7.443488e-02	ci left: 5.011836e-03	ci right 5.401150e-03	k: 2758	n:530000
GAS7   530000 perm   192 sec   (2758 perm/sec)   p_kst 5.203774e-03   p_cons 2.007925e-02   p_joint 1.654717e-03

Joint ci ratio: 1.309957e-01	ci left: 1.547087e-03	ci right 1.765723e-03	k: 893	n:540000
Cons ci ratio: 3.723917e-02	ci left: 1.973284e-02	ci right 2.048343e-02	k: 10857	n:540000
KS ci ratio: 7.374319e-02	ci left: 5.013536e-03	ci right 5.399209e-03	k: 2810	n:540000
GAS7   540000 perm   198 sec   (2732 perm/sec)   p_kst 5.203704e-03   p_cons 2.010556e-02   p_joint 1.653704e-03

Joint ci ratio: 1.302700e-01	ci left: 1.536545e-03	ci right 1.752395e-03	k: 903	n:550000
Cons ci ratio: 3.692477e-02	ci left: 1.970910e-02	ci right 2.045233e-02	k: 11043	n:550000
KS ci ratio: 7.327655e-02	ci left: 4.986630e-03	ci right 5.367702e-03	k: 2846	n:550000
GAS7   550000 perm   203 sec   (2704 perm/sec)   p_kst 5.174545e-03   p_cons 2.007818e-02   p_joint 1.641818e-03

Joint ci ratio: 1.291323e-01	ci left: 1.536751e-03	ci right 1.750601e-03	k: 919	n:560000
Cons ci ratio: 3.662153e-02	ci left: 1.968270e-02	ci right 2.041871e-02	k: 11227	n:560000
KS ci ratio: 7.270466e-02	ci left: 4.976473e-03	ci right 5.353675e-03	k: 2891	n:560000
GAS7   560000 perm   209 sec   (2678 perm/sec)   p_kst 5.162500e-03   p_cons 2.004821e-02   p_joint 1.641071e-03

Joint ci ratio: 1.279554e-01	ci left: 1.538656e-03	ci right 1.750671e-03	k: 936	n:570000
Cons ci ratio: 3.630130e-02	ci left: 1.968333e-02	ci right 2.041279e-02	k: 11426	n:570000
KS ci ratio: 7.208430e-02	ci left: 4.975297e-03	ci right 5.349058e-03	k: 2941	n:570000
GAS7   570000 perm   215 sec   (2653 perm/sec)   p_kst 5.159649e-03   p_cons 2.004561e-02   p_joint 1.642105e-03

Joint ci ratio: 1.273461e-01	ci left: 1.527149e-03	ci right 1.736500e-03	k: 945	n:580000
Cons ci ratio: 3.597196e-02	ci left: 1.970276e-02	ci right 2.042618e-02	k: 11636	n:580000
KS ci ratio: 7.135978e-02	ci left: 4.991111e-03	ci right 5.362134e-03	k: 3001	n:580000
GAS7   580000 perm   221 sec   (2630 perm/sec)   p_kst 5.174138e-03   p_cons 2.006207e-02   p_joint 1.629310e-03

Joint ci ratio: 1.266127e-01	ci left: 1.519316e-03	ci right 1.726305e-03	k: 956	n:590000
Cons ci ratio: 3.564989e-02	ci left: 1.972324e-02	ci right 2.044080e-02	k: 11847	n:590000
KS ci ratio: 7.078460e-02	ci left: 4.988090e-03	ci right 5.355778e-03	k: 3050	n:590000
GAS7   590000 perm   226 sec   (2606 perm/sec)   p_kst 5.169492e-03   p_cons 2.007966e-02   p_joint 1.620339e-03

Joint ci ratio: 1.258918e-01	ci left: 1.511748e-03	ci right 1.716446e-03	k: 967	n:600000
Cons ci ratio: 3.533782e-02	ci left: 1.974142e-02	ci right 2.045322e-02	k: 12057	n:600000
KS ci ratio: 7.034867e-02	ci left: 4.967169e-03	ci right 5.330968e-03	k: 3088	n:600000
GAS7   600000 perm   232 sec   (2582 perm/sec)   p_kst 5.146667e-03   p_cons 2.009500e-02   p_joint 1.611667e-03

Joint ci ratio: 1.246739e-01	ci left: 1.517137e-03	ci right 1.720430e-03	k: 986	n:610000
Cons ci ratio: 3.508344e-02	ci left: 1.970377e-02	ci right 2.040900e-02	k: 12233	n:610000
KS ci ratio: 6.974158e-02	ci left: 4.972715e-03	ci right 5.333649e-03	k: 3142	n:610000
GAS7   610000 perm   238 sec   (2560 perm/sec)   p_kst 5.150820e-03   p_cons 2.005410e-02   p_joint 1.616393e-03

Joint ci ratio: 1.236755e-01	ci left: 1.517672e-03	ci right 1.719289e-03	k: 1002	n:620000
Cons ci ratio: 3.481159e-02	ci left: 1.969293e-02	ci right 2.039221e-02	k: 12425	n:620000
KS ci ratio: 6.890125e-02	ci left: 5.014554e-03	ci right 5.373964e-03	k: 3219	n:620000
GAS7   620000 perm   244 sec   (2537 perm/sec)   p_kst 5.191935e-03   p_cons 2.004032e-02   p_joint 1.616129e-03

Joint ci ratio: 1.258966e-01	ci left: 1.439757e-03	ci right 1.634714e-03	k: 967	n:630000
Cons ci ratio: 3.452920e-02	ci left: 1.970135e-02	ci right 2.039514e-02	k: 12629	n:630000
KS ci ratio: 6.834105e-02	ci left: 5.017642e-03	ci right 5.374233e-03	k: 3272	n:630000
GAS7   630000 perm   251 sec   (2514 perm/sec)   p_kst 5.193651e-03   p_cons 2.004603e-02   p_joint 1.534921e-03

Joint ci ratio: 1.146447e-01	ci left: 1.718878e-03	ci right 1.929423e-03	k: 1166	n:640000
Cons ci ratio: 3.425903e-02	ci left: 1.970333e-02	ci right 2.039165e-02	k: 12829	n:640000
KS ci ratio: 6.780455e-02	ci left: 5.019108e-03	ci right 5.372894e-03	k: 3324	n:640000
GAS7   640000 perm   257 sec   (2493 perm/sec)   p_kst 5.193750e-03   p_cons 2.004531e-02   p_joint 1.821875e-03

Joint ci ratio: 1.135788e-01	ci left: 1.725314e-03	ci right 1.934551e-03	k: 1188	n:650000
Cons ci ratio: 3.400309e-02	ci left: 1.969612e-02	ci right 2.037894e-02	k: 13023	n:650000
KS ci ratio: 6.718057e-02	ci left: 5.035667e-03	ci right 5.387226e-03	k: 3386	n:650000
GAS7   650000 perm   263 sec   (2471 perm/sec)   p_kst 5.209231e-03   p_cons 2.003538e-02   p_joint 1.827692e-03

Joint ci ratio: 1.153932e-01	ci left: 1.644713e-03	ci right 1.847579e-03	k: 1151	n:660000
Cons ci ratio: 3.375020e-02	ci left: 1.969214e-02	ci right 2.036965e-02	k: 13219	n:660000
KS ci ratio: 6.658321e-02	ci left: 5.050249e-03	ci right 5.399570e-03	k: 3447	n:660000
GAS7   660000 perm   270 sec   (2448 perm/sec)   p_kst 5.222727e-03   p_cons 2.002879e-02   p_joint 1.743939e-03

Joint ci ratio: 1.144041e-01	ci left: 1.649158e-03	ci right 1.850711e-03	k: 1171	n:670000
Cons ci ratio: 3.346979e-02	ci left: 1.972680e-02	ci right 2.039975e-02	k: 13441	n:670000
KS ci ratio: 6.598260e-02	ci left: 5.067345e-03	ci right 5.414566e-03	k: 3510	n:670000
GAS7   670000 perm   276 sec   (2428 perm/sec)   p_kst 5.238806e-03   p_cons 2.006119e-02   p_joint 1.747761e-03

Joint ci ratio: 1.149472e-01	ci left: 1.609192e-03	ci right 1.806857e-03	k: 1160	n:680000
Cons ci ratio: 3.320369e-02	ci left: 1.975170e-02	ci right 2.042005e-02	k: 13657	n:680000
KS ci ratio: 6.553635e-02	ci left: 5.062252e-03	ci right 5.406689e-03	k: 3558	n:680000
GAS7   680000 perm   283 sec   (2406 perm/sec)   p_kst 5.232353e-03   p_cons 2.008382e-02   p_joint 1.705882e-03

Joint ci ratio: 1.143582e-01	ci left: 1.602762e-03	ci right 1.798561e-03	k: 1172	n:690000
Cons ci ratio: 3.297417e-02	ci left: 1.973996e-02	ci right 2.040321e-02	k: 13848	n:690000
KS ci ratio: 6.509904e-02	ci left: 5.057315e-03	ci right 5.399033e-03	k: 3606	n:690000
GAS7   690000 perm   289 sec   (2387 perm/sec)   p_kst 5.226087e-03   p_cons 2.006957e-02   p_joint 1.698551e-03

Joint ci ratio: 1.133953e-01	ci left: 1.607624e-03	ci right 1.802252e-03	k: 1192	n:700000
Cons ci ratio: 3.276125e-02	ci left: 1.971440e-02	ci right 2.037243e-02	k: 14029	n:700000
KS ci ratio: 6.460820e-02	ci left: 5.062365e-03	ci right 5.401749e-03	k: 3661	n:700000
GAS7   700000 perm   296 sec   (2367 perm/sec)   p_kst 5.230000e-03   p_cons 2.004143e-02   p_joint 1.702857e-03

Joint ci ratio: 1.128766e-01	ci left: 1.600035e-03	ci right 1.792799e-03	k: 1203	n:710000
Cons ci ratio: 3.254890e-02	ci left: 1.969377e-02	ci right 2.034677e-02	k: 14213	n:710000
KS ci ratio: 6.427622e-02	ci left: 5.043721e-03	ci right 5.380053e-03	k: 3699	n:710000
GAS7   710000 perm   303 sec   (2347 perm/sec)   p_kst 5.209859e-03   p_cons 2.001831e-02   p_joint 1.694366e-03

Joint ci ratio: 1.122724e-01	ci left: 1.595359e-03	ci right 1.786463e-03	k: 1216	n:720000
Cons ci ratio: 3.232344e-02	ci left: 1.969439e-02	ci right 2.034281e-02	k: 14412	n:720000
KS ci ratio: 6.377802e-02	ci left: 5.052936e-03	ci right 5.387175e-03	k: 3757	n:720000
GAS7   720000 perm   309 sec   (2327 perm/sec)   p_kst 5.218056e-03   p_cons 2.001667e-02   p_joint 1.688889e-03

Joint ci ratio: 1.115870e-01	ci left: 1.593478e-03	ci right 1.783114e-03	k: 1231	n:730000
Cons ci ratio: 3.209925e-02	ci left: 1.969909e-02	ci right 2.034308e-02	k: 14614	n:730000
KS ci ratio: 6.339150e-02	ci left: 5.045729e-03	ci right 5.377394e-03	k: 3803	n:730000
GAS7   730000 perm   316 sec   (2309 perm/sec)   p_kst 5.209589e-03   p_cons 2.001918e-02   p_joint 1.686301e-03

Joint ci ratio: 1.109586e-01	ci left: 1.590336e-03	ci right 1.778464e-03	k: 1245	n:740000
Cons ci ratio: 3.189064e-02	ci left: 1.969027e-02	ci right 2.032971e-02	k: 14806	n:740000
KS ci ratio: 6.291344e-02	ci left: 5.054685e-03	ci right 5.384342e-03	k: 3861	n:740000
GAS7   740000 perm   323 sec   (2290 perm/sec)   p_kst 5.217568e-03   p_cons 2.000811e-02   p_joint 1.682432e-03

Joint ci ratio: 1.101656e-01	ci left: 1.592468e-03	ci right 1.779414e-03	k: 1263	n:750000
Cons ci ratio: 3.168388e-02	ci left: 1.968434e-02	ci right 2.031937e-02	k: 15000	n:750000
KS ci ratio: 6.248610e-02	ci left: 5.056848e-03	ci right 5.384325e-03	k: 3914	n:750000
GAS7   750000 perm   330 sec   (2272 perm/sec)   p_kst 5.218667e-03   p_cons 2.000000e-02   p_joint 1.684000e-03

Joint ci ratio: 1.139303e-01	ci left: 1.466638e-03	ci right 1.645091e-03	k: 1181	n:760000
Cons ci ratio: 3.146209e-02	ci left: 1.970209e-02	ci right 2.033316e-02	k: 15212	n:760000
KS ci ratio: 6.199672e-02	ci left: 5.070621e-03	ci right 5.396325e-03	k: 3976	n:760000
GAS7   760000 perm   337 sec   (2255 perm/sec)   p_kst 5.231579e-03   p_cons 2.001579e-02   p_joint 1.553947e-03

Joint ci ratio: 9.889404e-02	ci left: 1.935635e-03	ci right 2.138270e-03	k: 1567	n:770000
Cons ci ratio: 3.125937e-02	ci left: 1.970134e-02	ci right 2.032825e-02	k: 15410	n:770000
KS ci ratio: 6.162611e-02	ci left: 5.066143e-03	ci right 5.389545e-03	k: 4024	n:770000
GAS7   770000 perm   344 sec   (2238 perm/sec)   p_kst 5.225974e-03   p_cons 2.001299e-02   p_joint 2.035065e-03

Outputting figure to mutsig2_images.part000000000069/GAS7.5_1545_770000_0.005226_0.020013_0.0020351.png
                gene_name: GAS7
               theta_stop: 0.099 
                    nperm: 770000 
                     p_ks: 0.0052 
        ci_ks_bounds_left: 0.0051 
       ci_ks_bounds_right: 0.0054 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.0020 
     ci_joint_bounds_left: 0.0019 
    ci_joint_bounds_right: 0.0021 

Current progress: 30 percent done.
GATA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.554127e-02	ci left: 3.231670e-01	ci right 3.417307e-01	k: 3324	n:10000
Cons ci ratio: 7.325487e-02	ci left: 2.143797e-01	ci right 2.307822e-01	k: 2225	n:10000
KS ci ratio: 4.428769e-02	ci left: 4.294418e-01	ci right 4.489936e-01	k: 4392	n:10000
GATA1   10000 perm   1 sec   (7025 perm/sec)   p_kst 4.392000e-01   p_cons 2.225000e-01   p_joint 3.324000e-01

Outputting figure to mutsig2_images.part000000000069/GATA1.5_1262_10000_0.4392_0.2225_0.3324.png
                gene_name: GATA1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 32 percent done.
GBA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.548769e-01	ci left: 5.552036e-02	ci right 6.493785e-02	k: 601	n:10000
Cons ci ratio: 4.849424e-02	ci left: 3.855000e-01	ci right 4.047611e-01	k: 3951	n:10000
KS ci ratio: 2.831816e-01	ci left: 1.613586e-02	ci right 2.154960e-02	k: 187	n:10000
GBA2   10000 perm   2 sec   (5987 perm/sec)   p_kst 1.870000e-02   p_cons 3.951000e-01   p_joint 6.010000e-02

Joint ci ratio: 1.001491e-01	ci left: 6.757588e-02	ci right 7.474940e-02	k: 1422	n:20000
Cons ci ratio: 3.574277e-02	ci left: 3.687822e-01	ci right 3.822540e-01	k: 7510	n:20000
KS ci ratio: 2.035806e-01	ci left: 1.634521e-02	ci right 2.009673e-02	k: 363	n:20000
GBA2   20000 perm   4 sec   (4832 perm/sec)   p_kst 1.815000e-02   p_cons 3.755000e-01   p_joint 7.110000e-02

Joint ci ratio: 1.496256e-01	ci left: 2.069096e-02	ci right 2.406909e-02	k: 670	n:30000
Cons ci ratio: 2.841416e-02	ci left: 3.826132e-01	ci right 3.936751e-01	k: 11644	n:30000
KS ci ratio: 1.642437e-01	ci left: 1.710123e-02	ci right 2.019299e-02	k: 558	n:30000
GBA2   30000 perm   6 sec   (4803 perm/sec)   p_kst 1.860000e-02   p_cons 3.881333e-01   p_joint 2.233333e-02

Joint ci ratio: 1.117373e-01	ci left: 2.817971e-02	ci right 3.153900e-02	k: 1193	n:40000
Cons ci ratio: 2.528467e-02	ci left: 3.705766e-01	ci right 3.800916e-01	k: 15013	n:40000
KS ci ratio: 1.415001e-01	ci left: 1.749153e-02	ci right 2.017897e-02	k: 752	n:40000
GBA2   40000 perm   8 sec   (4765 perm/sec)   p_kst 1.880000e-02   p_cons 3.753250e-01   p_joint 2.982500e-02

Joint ci ratio: 8.631006e-02	ci left: 3.790740e-02	ci right 4.134631e-02	k: 1980	n:50000
Cons ci ratio: 2.259264e-02	ci left: 3.715521e-01	ci right 3.800624e-01	k: 18790	n:50000
KS ci ratio: 1.275494e-01	ci left: 1.735627e-02	ci right 1.974009e-02	k: 926	n:50000
GBA2   50000 perm   11 sec   (4711 perm/sec)   p_kst 1.852000e-02   p_cons 3.758000e-01   p_joint 3.960000e-02

Joint ci ratio: 8.959655e-02	ci left: 2.952976e-02	ci right 3.231586e-02	k: 1854	n:60000
Cons ci ratio: 2.061844e-02	ci left: 3.720554e-01	ci right 3.798232e-01	k: 22556	n:60000
KS ci ratio: 1.147350e-01	ci left: 1.798736e-02	ci right 2.019284e-02	k: 1144	n:60000
GBA2   60000 perm   13 sec   (4641 perm/sec)   p_kst 1.906667e-02   p_cons 3.759333e-01   p_joint 3.090000e-02

Joint ci ratio: 7.343488e-02	ci left: 3.767608e-02	ci right 4.056228e-02	k: 2737	n:70000
Cons ci ratio: 1.911369e-02	ci left: 3.717397e-01	ci right 3.789278e-01	k: 26273	n:70000
KS ci ratio: 1.080881e-01	ci left: 1.744509e-02	ci right 1.945225e-02	k: 1290	n:70000
GBA2   70000 perm   15 sec   (4577 perm/sec)   p_kst 1.842857e-02   p_cons 3.753286e-01   p_joint 3.910000e-02

Joint ci ratio: 7.734064e-02	ci left: 2.990790e-02	ci right 3.232626e-02	k: 2488	n:80000
Cons ci ratio: 1.748839e-02	ci left: 3.823748e-01	ci right 3.891334e-01	k: 30860	n:80000
KS ci ratio: 1.015438e-01	ci left: 1.735808e-02	ci right 1.922708e-02	k: 1462	n:80000
GBA2   80000 perm   18 sec   (4510 perm/sec)   p_kst 1.827500e-02   p_cons 3.857500e-01   p_joint 3.110000e-02

Joint ci ratio: 7.164813e-02	ci left: 3.103439e-02	ci right 3.335145e-02	k: 2896	n:90000
Cons ci ratio: 1.650083e-02	ci left: 3.822074e-01	ci right 3.885777e-01	k: 34685	n:90000
KS ci ratio: 9.534995e-02	ci left: 1.755368e-02	ci right 1.932200e-02	k: 1658	n:90000
GBA2   90000 perm   20 sec   (4438 perm/sec)   p_kst 1.842222e-02   p_cons 3.853889e-01   p_joint 3.217778e-02

Outputting figure to mutsig2_images.part000000000069/GBA2.5_2852_90000_0.018422_0.38539_0.032178.png
                gene_name: GBA2
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 33 percent done.
GBE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.939842e-02	ci left: 4.875523e-01	ci right 5.072492e-01	k: 4974	n:10000
Cons ci ratio: 2.380899e-02	ci left: 7.216873e-01	ci right 7.391782e-01	k: 7305	n:10000
KS ci ratio: 4.820135e-02	ci left: 3.883871e-01	ci right 4.076723e-01	k: 3980	n:10000
GBE1   10000 perm   2 sec   (6162 perm/sec)   p_kst 3.980000e-01   p_cons 7.305000e-01   p_joint 4.974000e-01

Outputting figure to mutsig2_images.part000000000069/GBE1.5_2173_10000_0.398_0.7305_0.4974.png
                gene_name: GBE1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 35 percent done.
GBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.922036e-02	ci left: 7.983141e-01	ci right 8.139072e-01	k: 8062	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
GBP1   10000 perm   2 sec   (6601 perm/sec)   p_kst 1   p_cons 8.062000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GBP1.5_1819_10000_1_0.8062_1.png
                gene_name: GBP1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
GCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.478554e-02	ci left: 4.239572e-01	ci right 4.434814e-01	k: 4337	n:10000
Cons ci ratio: 4.334736e-02	ci left: 4.400155e-01	ci right 4.596137e-01	k: 4498	n:10000
KS ci ratio: 5.363278e-02	ci left: 3.387587e-01	ci right 3.575298e-01	k: 3481	n:10000
GCC1   10000 perm   2 sec   (5689 perm/sec)   p_kst 3.481000e-01   p_cons 4.498000e-01   p_joint 4.337000e-01

Outputting figure to mutsig2_images.part000000000069/GCC1.5_2336_10000_0.3481_0.4498_0.4337.png
                gene_name: GCC1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 39 percent done.
GCDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.339214e-02	ci left: 7.286569e-01	ci right 7.460046e-01	k: 7374	n:10000
Cons ci ratio: 5.881241e-02	ci left: 2.984627e-01	ci right 3.166495e-01	k: 3075	n:10000
KS ci ratio: 2.796419e-02	ci left: 6.533372e-01	ci right 6.719680e-01	k: 6627	n:10000
GCDH   10000 perm   2 sec   (6603 perm/sec)   p_kst 6.627000e-01   p_cons 3.075000e-01   p_joint 7.374000e-01

Outputting figure to mutsig2_images.part000000000069/GCDH.5_1409_10000_0.6627_0.3075_0.7374.png
                gene_name: GCDH
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 40 percent done.
GCKR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.060676e-02	ci left: 4.724627e-01	ci right 4.921476e-01	k: 4823	n:10000
Cons ci ratio: 2.624268e-02	ci left: 6.813348e-01	ci right 6.995541e-01	k: 6905	n:10000
KS ci ratio: 7.122053e-02	ci left: 2.241507e-01	ci right 2.408054e-01	k: 2324	n:10000
GCKR   10000 perm   1 sec   (6799 perm/sec)   p_kst 2.324000e-01   p_cons 6.905000e-01   p_joint 4.823000e-01

Outputting figure to mutsig2_images.part000000000069/GCKR.5_1954_10000_0.2324_0.6905_0.4823.png
                gene_name: GCKR
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 42 percent done.
GCNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.319143e-02	ci left: 2.146757e-01	ci right 2.310860e-01	k: 2228	n:10000
Cons ci ratio: 3.007054e-02	ci left: 6.199480e-01	ci right 6.389766e-01	k: 6295	n:10000
KS ci ratio: 9.727431e-02	ci left: 1.328630e-01	ci right 1.465476e-01	k: 1396	n:10000
GCNT1   10000 perm   2 sec   (6623 perm/sec)   p_kst 1.396000e-01   p_cons 6.295000e-01   p_joint 2.228000e-01

Outputting figure to mutsig2_images.part000000000069/GCNT1.5_1291_10000_0.1396_0.6295_0.2228.png
                gene_name: GCNT1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 44 percent done.
GANAB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.588489e-02	ci left: 5.341766e-01	ci right 5.537978e-01	k: 5440	n:10000
Cons ci ratio: 6.836926e-02	ci left: 2.388684e-01	ci right 2.558790e-01	k: 2473	n:10000
KS ci ratio: 1.706549e-02	ci left: 8.333784e-01	ci right 8.478226e-01	k: 8407	n:10000
GANAB   10000 perm   2 sec   (5908 perm/sec)   p_kst 8.407000e-01   p_cons 2.473000e-01   p_joint 5.440000e-01

Outputting figure to mutsig2_images.part000000000069/GANAB.4_3001_10000_0.8407_0.2473_0.544.png
                gene_name: GANAB
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 46 percent done.
GATA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.980258e-02	ci left: 7.886762e-01	ci right 8.045507e-01	k: 7967	n:10000
Cons ci ratio: 4.108126e-02	ci left: 4.666691e-01	ci right 4.863446e-01	k: 4765	n:10000
KS ci ratio: 2.695096e-02	ci left: 6.697486e-01	ci right 6.881471e-01	k: 6790	n:10000
GATA3   10000 perm   2 sec   (6523 perm/sec)   p_kst 6.790000e-01   p_cons 4.765000e-01   p_joint 7.967000e-01

Outputting figure to mutsig2_images.part000000000069/GATA3.4_1355_10000_0.679_0.4765_0.7967.png
                gene_name: GATA3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 47 percent done.
GBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.298371e-02	ci left: 1.438386e-01	ci right 1.579654e-01	k: 1508	n:10000
Cons ci ratio: 1.809983e-01	ci left: 4.073298e-02	ci right 4.893483e-02	k: 447	n:10000
KS ci ratio: 2.277052e-02	ci left: 7.390659e-01	ci right 7.561897e-01	k: 7477	n:10000
GBP3   10000 perm   2 sec   (6504 perm/sec)   p_kst 7.477000e-01   p_cons 4.470000e-02   p_joint 1.508000e-01

Joint ci ratio: 4.933866e-02	ci left: 2.339455e-01	ci right 2.458303e-01	k: 4797	n:20000
Cons ci ratio: 1.220452e-01	ci left: 4.604902e-02	ci right 5.208294e-02	k: 980	n:20000
KS ci ratio: 1.590293e-02	ci left: 7.463064e-01	ci right 7.583202e-01	k: 15047	n:20000
GBP3   20000 perm   3 sec   (5761 perm/sec)   p_kst 7.523500e-01   p_cons 4.900000e-02   p_joint 2.398500e-01

Joint ci ratio: 5.694684e-02	ci left: 1.325020e-01	ci right 1.403019e-01	k: 4091	n:30000
Cons ci ratio: 9.875369e-02	ci left: 4.743057e-02	ci right 5.239039e-02	k: 1496	n:30000
KS ci ratio: 1.302827e-02	ci left: 7.461665e-01	ci right 7.559849e-01	k: 22533	n:30000
GBP3   30000 perm   5 sec   (5486 perm/sec)   p_kst 7.511000e-01   p_cons 4.986667e-02   p_joint 1.363667e-01

Outputting figure to mutsig2_images.part000000000069/GBP3.4_1828_30000_0.7511_0.049867_0.13637.png
                gene_name: GBP3
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 49 percent done.
GCLC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.428899e-02	ci left: 3.332954e-01	ci right 3.519964e-01	k: 3426	n:10000
Cons ci ratio: 6.749929e-02	ci left: 2.436126e-01	ci right 2.607320e-01	k: 2521	n:10000
KS ci ratio: 4.123801e-02	ci left: 4.647714e-01	ci right 4.844434e-01	k: 4746	n:10000
GCLC   10000 perm   1 sec   (6779 perm/sec)   p_kst 4.746000e-01   p_cons 2.521000e-01   p_joint 3.426000e-01

Outputting figure to mutsig2_images.part000000000069/GCLC.4_1978_10000_0.4746_0.2521_0.3426.png
                gene_name: GCLC
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 51 percent done.
GCM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.303999e-02	ci left: 5.748680e-01	ci right 5.942827e-01	k: 5846	n:10000
KS ci ratio: 2.332572e-02	ci left: 7.297682e-01	ci right 7.470927e-01	k: 7385	n:10000
GCM2   10000 perm   1 sec   (6977 perm/sec)   p_kst 7.385000e-01   p_cons 5.846000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GCM2.4_1541_10000_0.7385_0.5846_1.png
                gene_name: GCM2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
GCNT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.457014e-02	ci left: 2.605249e-01	ci right 2.780097e-01	k: 2692	n:10000
Cons ci ratio: 4.995533e-02	ci left: 3.714676e-01	ci right 3.906018e-01	k: 3810	n:10000
KS ci ratio: 1.051569e-01	ci left: 1.155484e-01	ci right 1.284727e-01	k: 1219	n:10000
GCNT3   10000 perm   1 sec   (6962 perm/sec)   p_kst 1.219000e-01   p_cons 3.810000e-01   p_joint 2.692000e-01

Joint ci ratio: 5.373702e-02	ci left: 2.044716e-01	ci right 2.158128e-01	k: 4202	n:20000
Cons ci ratio: 3.623941e-02	ci left: 3.623568e-01	ci right 3.757813e-01	k: 7381	n:20000
KS ci ratio: 7.467253e-02	ci left: 1.165597e-01	ci right 1.256508e-01	k: 2421	n:20000
GCNT3   20000 perm   3 sec   (5956 perm/sec)   p_kst 1.210500e-01   p_cons 3.690500e-01   p_joint 2.101000e-01

Outputting figure to mutsig2_images.part000000000069/GCNT3.4_1321_20000_0.12105_0.36905_0.2101.png
                gene_name: GCNT3
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 54 percent done.
GANC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.633221e-02	ci left: 4.074111e-01	ci right 4.268372e-01	k: 4171	n:10000
Cons ci ratio: 2.338610e-02	ci left: 7.287579e-01	ci right 7.461036e-01	k: 7375	n:10000
KS ci ratio: 6.609721e-02	ci left: 2.515227e-01	ci right 2.688172e-01	k: 2601	n:10000
GANC   10000 perm   2 sec   (6219 perm/sec)   p_kst 2.601000e-01   p_cons 7.375000e-01   p_joint 4.171000e-01

Outputting figure to mutsig2_images.part000000000069/GANC.3_2841_10000_0.2601_0.7375_0.4171.png
                gene_name: GANC
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 56 percent done.
GAP43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.162196e-02	ci left: 2.221762e-01	ci right 2.387810e-01	k: 2304	n:10000
Cons ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
KS ci ratio: 1.635946e-02	ci left: 8.445820e-01	ci right 8.586125e-01	k: 8517	n:10000
GAP43   10000 perm   1 sec   (7034 perm/sec)   p_kst 8.517000e-01   p_cons 1.190000e-02   p_joint 2.304000e-01

Joint ci ratio: 8.734023e-02	ci left: 8.748975e-02	ci right 9.552946e-02	k: 1829	n:20000
Cons ci ratio: 2.737235e-01	ci left: 8.760815e-03	ci right 1.158433e-02	k: 202	n:20000
KS ci ratio: 1.139265e-02	ci left: 8.505506e-01	ci right 8.603459e-01	k: 17110	n:20000
GAP43   20000 perm   3 sec   (6315 perm/sec)   p_kst 8.555000e-01   p_cons 1.010000e-02   p_joint 9.145000e-02

Joint ci ratio: 4.621921e-02	ci left: 1.889108e-01	ci right 1.978820e-01	k: 5801	n:30000
Cons ci ratio: 2.006145e-01	ci left: 1.130517e-02	ci right 1.385719e-02	k: 376	n:30000
KS ci ratio: 9.244096e-03	ci left: 8.530211e-01	ci right 8.609763e-01	k: 25711	n:30000
GAP43   30000 perm   5 sec   (5794 perm/sec)   p_kst 8.570333e-01   p_cons 1.253333e-02   p_joint 1.933667e-01

Joint ci ratio: 4.003672e-02	ci left: 1.894401e-01	ci right 1.972045e-01	k: 7732	n:40000
Cons ci ratio: 1.740303e-01	ci left: 1.143422e-02	ci right 1.363740e-02	k: 500	n:40000
KS ci ratio: 8.026203e-03	ci left: 8.529250e-01	ci right 8.598232e-01	k: 34256	n:40000
GAP43   40000 perm   7 sec   (5687 perm/sec)   p_kst 8.564000e-01   p_cons 1.250000e-02   p_joint 1.933000e-01

Joint ci ratio: 3.653859e-02	ci left: 1.836899e-01	ci right 1.905465e-01	k: 9355	n:50000
Cons ci ratio: 1.580059e-01	ci left: 1.119852e-02	ci right 1.313874e-02	k: 607	n:50000
KS ci ratio: 7.160700e-03	ci left: 8.539210e-01	ci right 8.600775e-01	k: 42851	n:50000
GAP43   50000 perm   9 sec   (5582 perm/sec)   p_kst 8.570200e-01   p_cons 1.214000e-02   p_joint 1.871000e-01

Joint ci ratio: 3.749439e-02	ci left: 1.512030e-01	ci right 1.569972e-01	k: 9245	n:60000
Cons ci ratio: 1.435043e-01	ci left: 1.140123e-02	ci right 1.317975e-02	k: 736	n:60000
KS ci ratio: 6.541742e-03	ci left: 8.540053e-01	ci right 8.596268e-01	k: 51410	n:60000
GAP43   60000 perm   11 sec   (5480 perm/sec)   p_kst 8.568333e-01   p_cons 1.226667e-02   p_joint 1.540833e-01

Joint ci ratio: 3.472831e-02	ci left: 1.513050e-01	ci right 1.566666e-01	k: 10778	n:70000
Cons ci ratio: 1.328463e-01	ci left: 1.146897e-02	ci right 1.311468e-02	k: 859	n:70000
KS ci ratio: 6.056574e-03	ci left: 8.542120e-01	ci right 8.594155e-01	k: 59978	n:70000
GAP43   70000 perm   13 sec   (5375 perm/sec)   p_kst 8.568286e-01   p_cons 1.227143e-02   p_joint 1.539714e-01

Joint ci ratio: 3.317064e-02	ci left: 1.461542e-01	ci right 1.510964e-01	k: 11889	n:80000
Cons ci ratio: 1.243213e-01	ci left: 1.151135e-02	ci right 1.304933e-02	k: 981	n:80000
KS ci ratio: 5.677014e-03	ci left: 8.538752e-01	ci right 8.587489e-01	k: 68506	n:80000
GAP43   80000 perm   15 sec   (5276 perm/sec)   p_kst 8.563250e-01   p_cons 1.226250e-02   p_joint 1.486125e-01

Joint ci ratio: 3.202274e-02	ci left: 1.404430e-01	ci right 1.450245e-01	k: 12845	n:90000
Cons ci ratio: 1.177930e-01	ci left: 1.143906e-02	ci right 1.288153e-02	k: 1093	n:90000
KS ci ratio: 5.346830e-03	ci left: 8.542708e-01	ci right 8.588617e-01	k: 77092	n:90000
GAP43   90000 perm   17 sec   (5182 perm/sec)   p_kst 8.565778e-01   p_cons 1.214444e-02   p_joint 1.427222e-01

Joint ci ratio: 2.966464e-02	ci left: 1.464503e-01	ci right 1.508701e-01	k: 14865	n:100000
Cons ci ratio: 1.127170e-01	ci left: 1.127599e-02	ci right 1.263254e-02	k: 1194	n:100000
KS ci ratio: 5.083331e-03	ci left: 8.538590e-01	ci right 8.582204e-01	k: 85605	n:100000
GAP43   100000 perm   20 sec   (5093 perm/sec)   p_kst 8.560500e-01   p_cons 1.194000e-02   p_joint 1.486500e-01

Joint ci ratio: 2.645136e-02	ci left: 1.642214e-01	ci right 1.686325e-01	k: 18306	n:110000
Cons ci ratio: 1.076998e-01	ci left: 1.125869e-02	ci right 1.254905e-02	k: 1308	n:110000
KS ci ratio: 4.863641e-03	ci left: 8.530974e-01	ci right 8.572657e-01	k: 94071	n:110000
GAP43   110000 perm   22 sec   (5004 perm/sec)   p_kst 8.551909e-01   p_cons 1.189091e-02   p_joint 1.664182e-01

Joint ci ratio: 2.531634e-02	ci left: 1.644128e-01	ci right 1.686367e-01	k: 19982	n:120000
Cons ci ratio: 1.029325e-01	ci left: 1.132661e-02	ci right 1.256381e-02	k: 1432	n:120000
KS ci ratio: 4.642767e-03	ci left: 8.539254e-01	ci right 8.579074e-01	k: 102711	n:120000
GAP43   120000 perm   24 sec   (4923 perm/sec)   p_kst 8.559250e-01   p_cons 1.193333e-02   p_joint 1.665167e-01

Joint ci ratio: 2.636943e-02	ci left: 1.433731e-01	ci right 1.472119e-01	k: 18887	n:130000
Cons ci ratio: 9.926444e-02	ci left: 1.126508e-02	ci right 1.244915e-02	k: 1540	n:130000
KS ci ratio: 4.463300e-03	ci left: 8.538554e-01	ci right 8.576826e-01	k: 111251	n:130000
GAP43   130000 perm   27 sec   (4833 perm/sec)   p_kst 8.557769e-01   p_cons 1.184615e-02   p_joint 1.452846e-01

Outputting figure to mutsig2_images.part000000000069/GAP43.3_871_130000_0.85578_0.011846_0.14528.png
                gene_name: GAP43
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 58 percent done.
GARNL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.539863e-02	ci left: 6.952470e-01	ci right 7.132339e-01	k: 7043	n:10000
Cons ci ratio: 4.812099e-02	ci left: 3.891836e-01	ci right 4.084753e-01	k: 3988	n:10000
KS ci ratio: 2.613224e-02	ci left: 6.831489e-01	ci right 7.013390e-01	k: 6923	n:10000
GARNL3   10000 perm   2 sec   (5534 perm/sec)   p_kst 6.923000e-01   p_cons 3.988000e-01   p_joint 7.043000e-01

Outputting figure to mutsig2_images.part000000000069/GARNL3.3_3154_10000_0.6923_0.3988_0.7043.png
                gene_name: GARNL3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 60 percent done.
GARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.426074e-02	ci left: 4.297410e-01	ci right 4.492943e-01	k: 4395	n:10000
Cons ci ratio: 8.088317e-02	ci left: 1.824506e-01	ci right 1.979303e-01	k: 1901	n:10000
KS ci ratio: 3.799760e-02	ci left: 5.056516e-01	ci right 5.253394e-01	k: 5155	n:10000
GARS   10000 perm   1 sec   (6673 perm/sec)   p_kst 5.155000e-01   p_cons 1.901000e-01   p_joint 4.395000e-01

Outputting figure to mutsig2_images.part000000000069/GARS.3_2288_10000_0.5155_0.1901_0.4395.png
                gene_name: GARS
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 61 percent done.
GART
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.710789e-02	ci left: 2.457875e-01	ci right 2.629558e-01	k: 2543	n:10000
Cons ci ratio: 3.237110e-02	ci left: 5.848004e-01	ci right 6.041445e-01	k: 5945	n:10000
KS ci ratio: 1.154273e-01	ci left: 9.740099e-02	ci right 1.094311e-01	k: 1033	n:10000
GART   10000 perm   2 sec   (6276 perm/sec)   p_kst 1.033000e-01   p_cons 5.945000e-01   p_joint 2.543000e-01

Joint ci ratio: 6.591775e-02	ci left: 1.452747e-01	ci right 1.552272e-01	k: 3004	n:20000
Cons ci ratio: 2.296951e-02	ci left: 5.860029e-01	ci right 5.996701e-01	k: 11857	n:20000
KS ci ratio: 8.340923e-02	ci left: 9.528684e-02	ci right 1.036300e-01	k: 1988	n:20000
GART   20000 perm   4 sec   (5672 perm/sec)   p_kst 9.940000e-02   p_cons 5.928500e-01   p_joint 1.502000e-01

Outputting figure to mutsig2_images.part000000000069/GART.3_3121_20000_0.0994_0.59285_0.1502.png
                gene_name: GART
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 63 percent done.
GAS2L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.876542e-02	ci left: 4.956504e-01	ci right 5.153464e-01	k: 5055	n:10000
KS ci ratio: 1.107050e-02	ci left: 9.209006e-01	ci right 9.312496e-01	k: 9262	n:10000
GAS2L3   10000 perm   2 sec   (6552 perm/sec)   p_kst 9.262000e-01   p_cons 5.055000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GAS2L3.3_2117_10000_0.9262_0.5055_1.png
                gene_name: GAS2L3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
GATA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.035678e-01	ci left: 1.187734e-01	ci right 1.318457e-01	k: 1252	n:10000
Cons ci ratio: 9.230038e-02	ci left: 1.457019e-01	ci right 1.599010e-01	k: 1527	n:10000
KS ci ratio: 1.128868e-01	ci left: 1.014940e-01	ci right 1.137357e-01	k: 1075	n:10000
GATA2   10000 perm   1 sec   (6808 perm/sec)   p_kst 1.075000e-01   p_cons 1.527000e-01   p_joint 1.252000e-01

Joint ci ratio: 7.804776e-02	ci left: 1.076118e-01	ci right 1.164013e-01	k: 2239	n:20000
Cons ci ratio: 6.602120e-02	ci left: 1.448802e-01	ci right 1.548218e-01	k: 2996	n:20000
KS ci ratio: 8.177543e-02	ci left: 9.882035e-02	ci right 1.072955e-01	k: 2060	n:20000
GATA2   20000 perm   3 sec   (5988 perm/sec)   p_kst 1.030000e-01   p_cons 1.498000e-01   p_joint 1.119500e-01

Outputting figure to mutsig2_images.part000000000069/GATA2.3_1463_20000_0.103_0.1498_0.11195.png
                gene_name: GATA2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 67 percent done.
GATAD2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.848396e-03	ci left: 9.358910e-01	ci right 9.452503e-01	k: 9407	n:10000
KS ci ratio: 3.075105e-02	ci left: 6.093982e-01	ci right 6.285324e-01	k: 6190	n:10000
GATAD2B   10000 perm   2 sec   (5693 perm/sec)   p_kst 6.190000e-01   p_cons 9.407000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GATAD2B.3_1822_10000_0.619_0.9407_1.png
                gene_name: GATAD2B
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
GBA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.647580e-02	ci left: 8.427478e-01	ci right 8.568478e-01	k: 8499	n:10000
Cons ci ratio: 4.157851e-02	ci left: 4.606770e-01	ci right 4.803401e-01	k: 4705	n:10000
KS ci ratio: 5.544133e-02	ci left: 3.239612e-01	ci right 3.425360e-01	k: 3332	n:10000
GBA3   10000 perm   1 sec   (6688 perm/sec)   p_kst 3.332000e-01   p_cons 4.705000e-01   p_joint 8.499000e-01

Outputting figure to mutsig2_images.part000000000069/GBA3.3_1430_10000_0.3332_0.4705_0.8499.png
                gene_name: GBA3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 70 percent done.
GBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.133230e-02	ci left: 1.807775e-01	ci right 1.962044e-01	k: 1884	n:10000
Cons ci ratio: 2.386340e-02	ci left: 7.207785e-01	ci right 7.382876e-01	k: 7296	n:10000
KS ci ratio: 1.297800e-01	ci left: 7.814990e-02	ci right 8.909410e-02	k: 835	n:10000
GBP2   10000 perm   2 sec   (6416 perm/sec)   p_kst 8.350000e-02   p_cons 7.296000e-01   p_joint 1.884000e-01

Joint ci ratio: 5.439305e-02	ci left: 2.005120e-01	ci right 2.117736e-01	k: 4122	n:20000
Cons ci ratio: 1.707319e-02	ci left: 7.187040e-01	ci right 7.311306e-01	k: 14499	n:20000
KS ci ratio: 9.237437e-02	ci left: 7.877186e-02	ci right 8.645000e-02	k: 1651	n:20000
GBP2   20000 perm   3 sec   (5828 perm/sec)   p_kst 8.255000e-02   p_cons 7.249500e-01   p_joint 2.061000e-01

Outputting figure to mutsig2_images.part000000000069/GBP2.3_1816_20000_0.08255_0.72495_0.2061.png
                gene_name: GBP2
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 72 percent done.
GBP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.439761e-02	ci left: 3.324015e-01	ci right 3.510908e-01	k: 3417	n:10000
Cons ci ratio: 4.537380e-02	ci left: 4.175767e-01	ci right 4.370657e-01	k: 4273	n:10000
KS ci ratio: 9.201623e-02	ci left: 1.464866e-01	ci right 1.607158e-01	k: 1535	n:10000
GBP4   10000 perm   1 sec   (7259 perm/sec)   p_kst 1.535000e-01   p_cons 4.273000e-01   p_joint 3.417000e-01

Outputting figure to mutsig2_images.part000000000069/GBP4.3_1967_10000_0.1535_0.4273_0.3417.png
                gene_name: GBP4
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 74 percent done.
GBP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.781424e-02	ci left: 6.557528e-01	ci right 6.743510e-01	k: 6651	n:10000
Cons ci ratio: 3.966721e-02	ci left: 4.841538e-01	ci right 5.038497e-01	k: 4940	n:10000
KS ci ratio: 4.712230e-02	ci left: 3.992419e-01	ci right 4.186112e-01	k: 4089	n:10000
GBP5   10000 perm   1 sec   (6686 perm/sec)   p_kst 4.089000e-01   p_cons 4.940000e-01   p_joint 6.651000e-01

Outputting figure to mutsig2_images.part000000000069/GBP5.3_1801_10000_0.4089_0.494_0.6651.png
                gene_name: GBP5
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 75 percent done.
GDAP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.176608e-01	ci left: 9.399250e-02	ci right 1.058417e-01	k: 998	n:10000
Cons ci ratio: 6.064282e-02	ci left: 2.856761e-01	ci right 3.036436e-01	k: 2946	n:10000
KS ci ratio: 2.236599e-01	ci left: 2.646035e-02	ci right 3.321723e-02	k: 297	n:10000
GDAP1L1   10000 perm   1 sec   (7212 perm/sec)   p_kst 2.970000e-02   p_cons 2.946000e-01   p_joint 9.980000e-02

Joint ci ratio: 1.374995e-01	ci left: 3.635916e-02	ci right 4.177590e-02	k: 780	n:20000
Cons ci ratio: 4.373715e-02	ci left: 2.802404e-01	ci right 2.928217e-01	k: 5730	n:20000
KS ci ratio: 1.619766e-01	ci left: 2.614160e-02	ci right 3.079684e-02	k: 568	n:20000
GDAP1L1   20000 perm   3 sec   (6379 perm/sec)   p_kst 2.840000e-02   p_cons 2.865000e-01   p_joint 3.900000e-02

Joint ci ratio: 1.091778e-01	ci left: 3.894635e-02	ci right 4.347638e-02	k: 1235	n:30000
Cons ci ratio: 3.568075e-02	ci left: 2.817527e-01	ci right 2.920219e-01	k: 8606	n:30000
KS ci ratio: 1.345013e-01	ci left: 2.567866e-02	ci right 2.941359e-02	k: 825	n:30000
GDAP1L1   30000 perm   5 sec   (6036 perm/sec)   p_kst 2.750000e-02   p_cons 2.868667e-01   p_joint 4.116667e-02

Joint ci ratio: 6.224743e-02	ci left: 8.738534e-02	ci right 9.302432e-02	k: 3607	n:40000
Cons ci ratio: 3.093448e-02	ci left: 2.819977e-01	ci right 2.908833e-01	k: 11457	n:40000
KS ci ratio: 1.128627e-01	ci left: 2.762041e-02	ci right 3.094839e-02	k: 1170	n:40000
GDAP1L1   40000 perm   7 sec   (5836 perm/sec)   p_kst 2.925000e-02   p_cons 2.864250e-01   p_joint 9.017500e-02

Joint ci ratio: 5.644973e-02	ci left: 8.547159e-02	ci right 9.045637e-02	k: 4397	n:50000
Cons ci ratio: 2.773581e-02	ci left: 2.814840e-01	ci right 2.894210e-01	k: 14272	n:50000
KS ci ratio: 1.015479e-01	ci left: 2.746851e-02	ci right 3.042652e-02	k: 1446	n:50000
GDAP1L1   50000 perm   9 sec   (5684 perm/sec)   p_kst 2.892000e-02   p_cons 2.854400e-01   p_joint 8.794000e-02

Joint ci ratio: 7.398153e-02	ci left: 4.304388e-02	ci right 4.636700e-02	k: 2681	n:60000
Cons ci ratio: 2.528472e-02	ci left: 2.823863e-01	ci right 2.896344e-01	k: 17160	n:60000
KS ci ratio: 9.189672e-02	ci left: 2.807910e-02	ci right 3.080000e-02	k: 1765	n:60000
GDAP1L1   60000 perm   11 sec   (5553 perm/sec)   p_kst 2.941667e-02   p_cons 2.860000e-01   p_joint 4.468333e-02

Outputting figure to mutsig2_images.part000000000069/GDAP1L1.3_1128_60000_0.029417_0.286_0.044683.png
                gene_name: GDAP1L1
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 77 percent done.
GDAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.168713e-02	ci left: 4.593790e-01	ci right 4.790390e-01	k: 4692	n:10000
KS ci ratio: 3.808897e-02	ci left: 5.044512e-01	ci right 5.241404e-01	k: 5143	n:10000
GDAP2   10000 perm   1 sec   (7491 perm/sec)   p_kst 5.143000e-01   p_cons 4.692000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GDAP2.3_1591_10000_0.5143_0.4692_1.png
                gene_name: GDAP2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
GALNTL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.284305e-02	ci left: 4.458030e-01	ci right 4.654229e-01	k: 4556	n:10000
Cons ci ratio: 2.069142e-02	ci left: 7.738773e-01	ci right 7.901581e-01	k: 7821	n:10000
KS ci ratio: 5.874346e-02	ci left: 2.989585e-01	ci right 3.171535e-01	k: 3080	n:10000
GALNTL4   10000 perm   1 sec   (6952 perm/sec)   p_kst 3.080000e-01   p_cons 7.821000e-01   p_joint 4.556000e-01

Outputting figure to mutsig2_images.part000000000069/GALNTL4.2_1868_10000_0.308_0.7821_0.4556.png
                gene_name: GALNTL4
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 81 percent done.
GALR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.310267e-02	ci left: 1.743827e-01	ci right 1.896031e-01	k: 1819	n:10000
Cons ci ratio: 9.028637e-02	ci left: 1.513922e-01	ci right 1.658072e-01	k: 1585	n:10000
KS ci ratio: 7.728861e-02	ci left: 1.966317e-01	ci right 2.125408e-01	k: 2045	n:10000
GALR1   10000 perm   2 sec   (6278 perm/sec)   p_kst 2.045000e-01   p_cons 1.585000e-01   p_joint 1.819000e-01

Outputting figure to mutsig2_images.part000000000069/GALR1.2_1062_10000_0.2045_0.1585_0.1819.png
                gene_name: GALR1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 82 percent done.
GALT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.952882e-03	ci left: 9.460656e-01	ci right 9.546696e-01	k: 9505	n:10000
Cons ci ratio: 1.688045e-02	ci left: 8.363308e-01	ci right 8.506684e-01	k: 8436	n:10000
KS ci ratio: 4.594381e-02	ci left: 4.114968e-01	ci right 4.309491e-01	k: 4212	n:10000
GALT   10000 perm   1 sec   (7195 perm/sec)   p_kst 4.212000e-01   p_cons 8.436000e-01   p_joint 9.505000e-01

Outputting figure to mutsig2_images.part000000000069/GALT.2_1184_10000_0.4212_0.8436_0.9505.png
                gene_name: GALT
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 84 percent done.
GAS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.036011e-02	ci left: 3.676872e-01	ci right 3.867843e-01	k: 3772	n:10000
KS ci ratio: 2.852276e-02	ci left: 6.443816e-01	ci right 6.631288e-01	k: 6538	n:10000
GAS2   10000 perm   1 sec   (7719 perm/sec)   p_kst 6.538000e-01   p_cons 3.772000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GAS2.2_970_10000_0.6538_0.3772_1.png
                gene_name: GAS2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
GAS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.969165e-02	ci left: 3.739550e-01	ci right 3.931129e-01	k: 3835	n:10000
KS ci ratio: 4.921176e-02	ci left: 3.785325e-01	ci right 3.977327e-01	k: 3881	n:10000
GAS8   10000 perm   1 sec   (7223 perm/sec)   p_kst 3.881000e-01   p_cons 3.835000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GAS8.2_1481_10000_0.3881_0.3835_1.png
                gene_name: GAS8
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
GATA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.674428e-02	ci left: 4.031269e-01	ci right 4.225239e-01	k: 4128	n:10000
Cons ci ratio: 7.196689e-02	ci left: 2.204982e-01	ci right 2.370601e-01	k: 2287	n:10000
KS ci ratio: 9.230038e-02	ci left: 1.457019e-01	ci right 1.599010e-01	k: 1527	n:10000
GATA6   10000 perm   1 sec   (7080 perm/sec)   p_kst 1.527000e-01   p_cons 2.287000e-01   p_joint 4.128000e-01

Outputting figure to mutsig2_images.part000000000069/GATA6.2_1812_10000_0.1527_0.2287_0.4128.png
                gene_name: GATA6
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 89 percent done.
GATAD2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.340871e-02	ci left: 4.393171e-01	ci right 4.589126e-01	k: 4491	n:10000
Cons ci ratio: 2.849757e-02	ci left: 6.447840e-01	ci right 6.635261e-01	k: 6542	n:10000
KS ci ratio: 8.056948e-02	ci left: 1.836317e-01	ci right 1.991485e-01	k: 1913	n:10000
GATAD2A   10000 perm   1 sec   (7115 perm/sec)   p_kst 1.913000e-01   p_cons 6.542000e-01   p_joint 4.491000e-01

Outputting figure to mutsig2_images.part000000000069/GATAD2A.2_1946_10000_0.1913_0.6542_0.4491.png
                gene_name: GATAD2A
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 91 percent done.
GATS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.023915e-02	ci left: 9.312316e-01	ci right 9.409125e-01	k: 9362	n:10000
Cons ci ratio: 2.452937e-02	ci left: 7.096736e-01	ci right 7.273989e-01	k: 7186	n:10000
KS ci ratio: 2.743434e-02	ci left: 6.618937e-01	ci right 6.804065e-01	k: 6712	n:10000
GATS   10000 perm   1 sec   (7965 perm/sec)   p_kst 6.712000e-01   p_cons 7.186000e-01   p_joint 9.362000e-01

Outputting figure to mutsig2_images.part000000000069/GATS.2_508_10000_0.6712_0.7186_0.9362.png
                gene_name: GATS
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 93 percent done.
GC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.921521e-02	ci left: 2.955875e-01	ci right 3.137265e-01	k: 3046	n:10000
Cons ci ratio: 7.023701e-02	ci left: 2.290880e-01	ci right 2.458652e-01	k: 2374	n:10000
KS ci ratio: 5.739355e-02	ci left: 3.088765e-01	ci right 3.272296e-01	k: 3180	n:10000
GC   10000 perm   1 sec   (7661 perm/sec)   p_kst 3.180000e-01   p_cons 2.374000e-01   p_joint 3.046000e-01

Outputting figure to mutsig2_images.part000000000069/GC.2_1473_10000_0.318_0.2374_0.3046.png
                gene_name: GC
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 95 percent done.
GCG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.860876e-02	ci left: 2.375838e-01	ci right 2.545644e-01	k: 2460	n:10000
Cons ci ratio: 1.219806e-01	ci left: 8.786290e-02	ci right 9.937509e-02	k: 935	n:10000
KS ci ratio: 2.103697e-02	ci left: 7.681038e-01	ci right 7.845349e-01	k: 7764	n:10000
GCG   10000 perm   1 sec   (8262 perm/sec)   p_kst 7.764000e-01   p_cons 9.350000e-02   p_joint 2.460000e-01

Joint ci ratio: 3.254350e-02	ci left: 4.135458e-01	ci right 4.272773e-01	k: 8408	n:20000
Cons ci ratio: 8.868017e-02	ci left: 8.503968e-02	ci right 9.298028e-02	k: 1779	n:20000
KS ci ratio: 1.486247e-02	ci left: 7.708633e-01	ci right 7.824562e-01	k: 15534	n:20000
GCG   20000 perm   3 sec   (7178 perm/sec)   p_kst 7.767000e-01   p_cons 8.895000e-02   p_joint 4.204000e-01

Outputting figure to mutsig2_images.part000000000069/GCG.2_563_20000_0.7767_0.08895_0.4204.png
                gene_name: GCG
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 96 percent done.
GCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.683359e-02	ci left: 6.716624e-01	ci right 6.900322e-01	k: 6809	n:10000
KS ci ratio: 2.244472e-02	ci left: 7.445255e-01	ci right 7.615269e-01	k: 7531	n:10000
GCK   10000 perm   1 sec   (7550 perm/sec)   p_kst 7.531000e-01   p_cons 6.809000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000069/GCK.2_1536_10000_0.7531_0.6809_1.png
                gene_name: GCK
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
GDF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.871812e-02	ci left: 3.833100e-01	ci right 4.025524e-01	k: 3929	n:10000
Cons ci ratio: 7.575520e-02	ci left: 2.031366e-01	ci right 2.192320e-01	k: 2111	n:10000
KS ci ratio: 5.461592e-02	ci left: 3.306139e-01	ci right 3.492795e-01	k: 3399	n:10000
GDF10   10000 perm   1 sec   (7611 perm/sec)   p_kst 3.399000e-01   p_cons 2.111000e-01   p_joint 3.929000e-01

Outputting figure to mutsig2_images.part000000000069/GDF10.2_1449_10000_0.3399_0.2111_0.3929.png
                gene_name: GDF10
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000069
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 69 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 9893949: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000070> was used as the working directory.
Started at Sat Oct  6 00:09:20 2012
Results reported at Sat Oct  6 03:01:58 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000070.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000070.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 70  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000070.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10421.35 sec.
    Max Memory :      3603 MB
    Max Swap   :      6045 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
70
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 70
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 70: processing genes 6221 - 6311
Calculating significance of each gene.
Using projection method.
6221	GDF11	4.660589e-01
6222	GDF15	8.028507e-01
6223	GDF2	8.585460e-01
6224	GDF3	1.404627e-01
6225	GDF5	8.279244e-01
6226	GDF6	2.383803e-01
6227	GDF7	1
6228	GDF9	3.071104e-01
6229	GDI1	8.792003e-01
6230	GDI2	8.058393e-01
6231	GDNF	5.146451e-01
6232	GDPD1	1
6233	GDPD2	1.129139e-02
6234	GDPD3	3.104314e-01
6235	GDPD4	6.990009e-01
6236	GDPD5	7.648610e-01
6237	GEFT	5.592234e-01
6238	GEM	5.413330e-03
6239	GEMIN4	7.730380e-01
6240	GEMIN5	4.764230e-01
6241	GEMIN6	1.607251e-01
6242	GEMIN7	1
6243	GEMIN8	4.412024e-01
6244	GEN1	5.239083e-01
6245	GET4	1
6246	GFAP	9.786070e-01
6247	GFER	1
6248	GFI1	5.746985e-01
6249	GFI1B	7.674253e-01
6250	GFM1	4.396775e-01
6251	GFM2	7.387300e-01
6252	GFOD1	2.171686e-01
6253	GFOD2	7.110577e-01
6254	GFPT1	3.913095e-01
6255	GFPT2	3.395939e-01
6256	GFRA1	1.205272e-03
6257	GFRA2	8.365519e-01
6258	GFRA3	6.987551e-01
6259	GFRAL	8.042124e-01
6260	GGA1	9.688202e-01
6261	GGA2	8.534842e-03
6262	GGA3	7.785604e-01
6263	GGCT	2.049899e-01
6264	GGCX	6.616203e-01
6265	GGH	5.076856e-01
6266	GGN	7.667175e-01
6267	GGNBP2	4.395305e-01
6268	GGPS1	7.610023e-01
6269	GGT1	5.940822e-01
6270	GGT5	7.360270e-01
6271	GGT6	1
6272	GGT7	7.229735e-01
6273	GGTLC1	6.865600e-01
6274	GGTLC2	1
6275	GH1	3.464244e-01
6276	GH2	6.088368e-01
6277	GHDC	9.272844e-01
6278	GHITM	3.147432e-01
6279	GHR	2.048683e-01
6280	GHRH	1
6281	GHRHR	4.256742e-01
6282	GHRL	3.297086e-01
In gene GHSR the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 1182    n = 1	mu =   7.59e-07
6283	GHSR	5.272542e-02
6284	GIF	6.832535e-01
6285	GIGYF1	7.543809e-01
In gene GIGYF2 the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 3840    n = 1	mu =   4.60e-07
6286	GIGYF2	7.654550e-02
6287	GIMAP1	4.955311e-01
6288	GIMAP2	5.757909e-01
6289	GIMAP4	4.256778e-01
6290	GIMAP5	1.443452e-02
6291	GIMAP6	2.292862e-01
6292	GIMAP7	1.396068e-01
6293	GIMAP8	5.153719e-02
6294	GIN1	4.363303e-01
6295	GINS1	1
6296	GINS2	1.424985e-01
6297	GINS3	7.911871e-01
6298	GINS4	5.948178e-01
6299	GIP	1
6300	GIPC1	1
6301	GIPC2	2.650836e-01
6302	GIPC3	6.965612e-01
6303	GIPR	1
6304	GIT1	8.769597e-01
6305	GIT2	2.943370e-01
6306	GIYD1	1
6307	GIYD2	1
6308	GJA1	2.487743e-02
6309	GJA10	6.404745e-03
6310	GJA3	1
6311	GJA4	6.068863e-01
Done

Running MutSig 2:
Scatter job 70: processing genes 6221 - 6311
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GIGYF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.224866e-01	ci left: 8.718231e-02	ci right 9.865611e-02	k: 928	n:10000
Cons ci ratio: 3.402247e-01	ci left: 1.087258e-02	ci right 1.541759e-02	k: 130	n:10000
KS ci ratio: 3.970690e-02	ci left: 4.836541e-01	ci right 5.033497e-01	k: 4935	n:10000
GIGYF2   10000 perm   2 sec   (4585 perm/sec)   p_kst 4.935000e-01   p_cons 1.300000e-02   p_joint 9.280000e-02

Joint ci ratio: 6.639951e-02	ci left: 1.434502e-01	ci right 1.533522e-01	k: 2967	n:20000
Cons ci ratio: 2.564170e-01	ci left: 1.006870e-02	ci right 1.307582e-02	k: 230	n:20000
KS ci ratio: 2.781089e-02	ci left: 4.913462e-01	ci right 5.052543e-01	k: 9966	n:20000
GIGYF2   20000 perm   7 sec   (3048 perm/sec)   p_kst 4.983000e-01   p_cons 1.150000e-02   p_joint 1.483500e-01

Joint ci ratio: 5.902684e-02	ci left: 1.243706e-01	ci right 1.319682e-01	k: 3844	n:30000
Cons ci ratio: 2.136156e-01	ci left: 9.913730e-03	ci right 1.231569e-02	k: 332	n:30000
KS ci ratio: 2.280364e-02	ci left: 4.905262e-01	ci right 5.018746e-01	k: 14886	n:30000
GIGYF2   30000 perm   9 sec   (3306 perm/sec)   p_kst 4.962000e-01   p_cons 1.106667e-02   p_joint 1.281333e-01

Joint ci ratio: 5.516089e-02	ci left: 1.089993e-01	ci right 1.152071e-01	k: 4483	n:40000
Cons ci ratio: 1.886845e-01	ci left: 9.667217e-03	ci right 1.170476e-02	k: 426	n:40000
KS ci ratio: 1.968667e-02	ci left: 4.928629e-01	ci right 5.026874e-01	k: 19911	n:40000
GIGYF2   40000 perm   12 sec   (3437 perm/sec)   p_kst 4.977750e-01   p_cons 1.065000e-02   p_joint 1.120750e-01

Joint ci ratio: 5.410154e-02	ci left: 9.244347e-02	ci right 9.760366e-02	k: 4750	n:50000
Cons ci ratio: 1.662259e-01	ci left: 1.008506e-02	ci right 1.193237e-02	k: 549	n:50000
KS ci ratio: 1.764491e-02	ci left: 4.923478e-01	ci right 5.011326e-01	k: 24837	n:50000
GIGYF2   50000 perm   14 sec   (3508 perm/sec)   p_kst 4.967400e-01   p_cons 1.098000e-02   p_joint 9.500000e-02

Joint ci ratio: 5.190756e-02	ci left: 8.454246e-02	ci right 8.906427e-02	k: 5207	n:60000
Cons ci ratio: 1.507074e-01	ci left: 1.030915e-02	ci right 1.200530e-02	k: 668	n:60000
KS ci ratio: 1.616915e-02	ci left: 4.908248e-01	ci right 4.988424e-01	k: 29690	n:60000
GIGYF2   60000 perm   17 sec   (3543 perm/sec)   p_kst 4.948333e-01   p_cons 1.113333e-02   p_joint 8.678333e-02

Joint ci ratio: 5.089883e-02	ci left: 7.612260e-02	ci right 8.011245e-02	k: 5467	n:70000
Cons ci ratio: 1.403028e-01	ci left: 1.025430e-02	ci right 1.181520e-02	k: 771	n:70000
KS ci ratio: 1.493959e-02	ci left: 4.921321e-01	ci right 4.995540e-01	k: 34709	n:70000
GIGYF2   70000 perm   20 sec   (3553 perm/sec)   p_kst 4.958429e-01   p_cons 1.101429e-02   p_joint 7.810000e-02

Joint ci ratio: 4.785762e-02	ci left: 7.552027e-02	ci right 7.923545e-02	k: 6189	n:80000
Cons ci ratio: 1.305908e-01	ci left: 1.040971e-02	ci right 1.187607e-02	k: 890	n:80000
KS ci ratio: 1.403091e-02	ci left: 4.903670e-01	ci right 4.973084e-01	k: 39507	n:80000
GIGYF2   80000 perm   23 sec   (3554 perm/sec)   p_kst 4.938375e-01   p_cons 1.112500e-02   p_joint 7.736250e-02

Joint ci ratio: 4.854063e-02	ci left: 6.592424e-02	ci right 6.921481e-02	k: 6080	n:90000
Cons ci ratio: 1.240247e-01	ci left: 1.029650e-02	ci right 1.166863e-02	k: 987	n:90000
KS ci ratio: 1.323331e-02	ci left: 4.903839e-01	ci right 4.969276e-01	k: 44429	n:90000
GIGYF2   90000 perm   25 sec   (3545 perm/sec)   p_kst 4.936556e-01   p_cons 1.096667e-02   p_joint 6.755556e-02

Joint ci ratio: 4.863535e-02	ci left: 5.951450e-02	ci right 6.249102e-02	k: 6099	n:100000
Cons ci ratio: 1.179746e-01	ci left: 1.027538e-02	ci right 1.157323e-02	k: 1091	n:100000
KS ci ratio: 1.255614e-02	ci left: 4.904765e-01	ci right 4.966839e-01	k: 49358	n:100000
GIGYF2   100000 perm   28 sec   (3528 perm/sec)   p_kst 4.935800e-01   p_cons 1.091000e-02   p_joint 6.099000e-02

Joint ci ratio: 4.587886e-02	ci left: 6.080673e-02	ci right 6.367095e-02	k: 6845	n:110000
Cons ci ratio: 1.121638e-01	ci left: 1.036548e-02	ci right 1.160596e-02	k: 1207	n:110000
KS ci ratio: 1.199226e-02	ci left: 4.897685e-01	ci right 4.956864e-01	k: 54200	n:110000
GIGYF2   110000 perm   31 sec   (3508 perm/sec)   p_kst 4.927273e-01   p_cons 1.097273e-02   p_joint 6.222727e-02

Joint ci ratio: 4.460259e-02	ci left: 5.912457e-02	ci right 6.183005e-02	k: 7256	n:120000
Cons ci ratio: 1.070532e-01	ci left: 1.045810e-02	ci right 1.164904e-02	k: 1325	n:120000
KS ci ratio: 1.148523e-02	ci left: 4.897424e-01	ci right 4.954080e-01	k: 59109	n:120000
GIGYF2   120000 perm   34 sec   (3482 perm/sec)   p_kst 4.925750e-01   p_cons 1.104167e-02   p_joint 6.046667e-02

Joint ci ratio: 4.326058e-02	ci left: 5.812108e-02	ci right 6.069861e-02	k: 7722	n:130000
Cons ci ratio: 1.027270e-01	ci left: 1.050757e-02	ci right 1.165286e-02	k: 1439	n:130000
KS ci ratio: 1.103258e-02	ci left: 4.899479e-01	ci right 4.953909e-01	k: 64047	n:130000
GIGYF2   130000 perm   38 sec   (3454 perm/sec)   p_kst 4.926692e-01   p_cons 1.106923e-02   p_joint 5.940000e-02

Joint ci ratio: 4.340567e-02	ci left: 5.385386e-02	ci right 5.625032e-02	k: 7706	n:140000
Cons ci ratio: 9.640714e-02	ci left: 1.110842e-02	ci right 1.224051e-02	k: 1633	n:140000
KS ci ratio: 1.062697e-02	ci left: 4.902492e-01	ci right 4.954940e-01	k: 69002	n:140000
GIGYF2   140000 perm   41 sec   (3424 perm/sec)   p_kst 4.928714e-01   p_cons 1.166429e-02   p_joint 5.504286e-02

Outputting figure to mutsig2_images.part000000000070/GIGYF2.13_4078_140000_0.49287_0.011664_0.055043.png
                gene_name: GIGYF2
               theta_stop: 0.096 
                    nperm: 140000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.056 

Current progress: 2 percent done.
GEMIN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.915270e-02	ci left: 7.994305e-01	ci right 8.149901e-01	k: 8073	n:10000
KS ci ratio: 1.145409e-02	ci left: 9.159518e-01	ci right 9.266012e-01	k: 9214	n:10000
GEMIN5   10000 perm   2 sec   (4996 perm/sec)   p_kst 9.214000e-01   p_cons 8.073000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GEMIN5.9_4639_10000_0.9214_0.8073_1.png
                gene_name: GEMIN5
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
GIMAP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.774740e-02	ci left: 5.089528e-01	ci right 5.286362e-01	k: 5188	n:10000
Cons ci ratio: 8.018115e-02	ci left: 1.851083e-01	ci right 2.006710e-01	k: 1928	n:10000
KS ci ratio: 2.445662e-02	ci left: 7.108847e-01	ci right 7.285871e-01	k: 7198	n:10000
GIMAP8   10000 perm   2 sec   (6391 perm/sec)   p_kst 7.198000e-01   p_cons 1.928000e-01   p_joint 5.188000e-01

Outputting figure to mutsig2_images.part000000000070/GIMAP8.9_2014_10000_0.7198_0.1928_0.5188.png
                gene_name: GIMAP8
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 5 percent done.
GJA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.587766e-02	ci left: 5.342767e-01	ci right 5.538976e-01	k: 5441	n:10000
Cons ci ratio: 2.584439e-02	ci left: 6.878865e-01	ci right 7.059987e-01	k: 6970	n:10000
KS ci ratio: 5.236922e-02	ci left: 3.495901e-01	ci right 3.684921e-01	k: 3590	n:10000
GJA10   10000 perm   2 sec   (6196 perm/sec)   p_kst 3.590000e-01   p_cons 6.970000e-01   p_joint 5.441000e-01

Outputting figure to mutsig2_images.part000000000070/GJA10.9_1636_10000_0.359_0.697_0.5441.png
                gene_name: GJA10
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 7 percent done.
GDPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.185675e-02	ci left: 5.925284e-01	ci right 6.118120e-01	k: 6022	n:10000
Cons ci ratio: 7.058784e-02	ci left: 2.273104e-01	ci right 2.440439e-01	k: 2356	n:10000
KS ci ratio: 1.941688e-02	ci left: 7.950668e-01	ci right 8.107563e-01	k: 8030	n:10000
GDPD2   10000 perm   2 sec   (6512 perm/sec)   p_kst 8.030000e-01   p_cons 2.356000e-01   p_joint 6.022000e-01

Outputting figure to mutsig2_images.part000000000070/GDPD2.8_1837_10000_0.803_0.2356_0.6022.png
                gene_name: GDPD2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 9 percent done.
GFRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.918346e-02	ci left: 7.989230e-01	ci right 8.144979e-01	k: 8068	n:10000
KS ci ratio: 1.301240e-02	ci left: 8.947738e-01	ci right 9.065916e-01	k: 9008	n:10000
GFRA1   10000 perm   2 sec   (6281 perm/sec)   p_kst 9.008000e-01   p_cons 8.068000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GFRA1.8_1438_10000_0.9008_0.8068_1.png
                gene_name: GFRA1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
GGA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.872880e-02	ci left: 1.560058e-01	ci right 1.705909e-01	k: 1632	n:10000
Cons ci ratio: 1.120139e-01	ci left: 1.029565e-01	ci right 1.152723e-01	k: 1090	n:10000
KS ci ratio: 6.061366e-02	ci left: 2.858743e-01	ci right 3.038454e-01	k: 2948	n:10000
GGA2   10000 perm   2 sec   (5392 perm/sec)   p_kst 2.948000e-01   p_cons 1.090000e-01   p_joint 1.632000e-01

Joint ci ratio: 5.271434e-02	ci left: 2.108581e-01	ci right 2.223244e-01	k: 4331	n:20000
Cons ci ratio: 7.988696e-02	ci left: 1.031412e-01	ci right 1.117733e-01	k: 2148	n:20000
KS ci ratio: 4.111800e-02	ci left: 3.059794e-01	ci right 3.188752e-01	k: 6248	n:20000
GGA2   20000 perm   4 sec   (4906 perm/sec)   p_kst 3.124000e-01   p_cons 1.074000e-01   p_joint 2.165500e-01

Outputting figure to mutsig2_images.part000000000070/GGA2.8_1910_20000_0.3124_0.1074_0.21655.png
                gene_name: GGA2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 12 percent done.
GGNBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.690887e-01	ci left: 4.667345e-02	ci right 5.539046e-02	k: 509	n:10000
Cons ci ratio: 1.056506e-01	ci left: 1.145714e-01	ci right 1.274503e-01	k: 1209	n:10000
KS ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
GGNBP2   10000 perm   2 sec   (5721 perm/sec)   p_kst 4.130000e-02   p_cons 1.209000e-01   p_joint 5.090000e-02

Joint ci ratio: 1.280629e-01	ci left: 4.187748e-02	ci right 4.765581e-02	k: 894	n:20000
Cons ci ratio: 7.802814e-02	ci left: 1.076609e-01	ci right 1.164522e-01	k: 2240	n:20000
KS ci ratio: 1.343958e-01	ci left: 3.805187e-02	ci right 4.358264e-02	k: 815	n:20000
GGNBP2   20000 perm   4 sec   (5210 perm/sec)   p_kst 4.075000e-02   p_cons 1.120000e-01   p_joint 4.470000e-02

Joint ci ratio: 1.014203e-01	ci left: 4.502272e-02	ci right 4.986541e-02	k: 1422	n:30000
Cons ci ratio: 6.377958e-02	ci left: 1.082552e-01	ci right 1.154202e-01	k: 3354	n:30000
KS ci ratio: 1.103469e-01	ci left: 3.813500e-02	ci right 4.262124e-02	k: 1210	n:30000
GGNBP2   30000 perm   6 sec   (5012 perm/sec)   p_kst 4.033333e-02   p_cons 1.118000e-01   p_joint 4.740000e-02

Joint ci ratio: 1.043134e-01	ci left: 3.231849e-02	ci right 3.589956e-02	k: 1363	n:40000
Cons ci ratio: 5.158543e-02	ci left: 1.228863e-01	ci right 1.294181e-01	k: 5045	n:40000
KS ci ratio: 9.580081e-02	ci left: 3.824713e-02	ci right 4.211998e-02	k: 1606	n:40000
GGNBP2   40000 perm   8 sec   (4875 perm/sec)   p_kst 4.015000e-02   p_cons 1.261250e-01   p_joint 3.407500e-02

Joint ci ratio: 9.341442e-02	ci left: 3.242859e-02	ci right 3.562581e-02	k: 1700	n:50000
Cons ci ratio: 4.935237e-02	ci left: 1.092681e-01	ci right 1.148170e-01	k: 5601	n:50000
KS ci ratio: 8.662929e-02	ci left: 3.763322e-02	ci right 4.106052e-02	k: 1966	n:50000
GGNBP2   50000 perm   11 sec   (4754 perm/sec)   p_kst 3.932000e-02   p_cons 1.120200e-01   p_joint 3.400000e-02

Outputting figure to mutsig2_images.part000000000070/GGNBP2.7_2146_50000_0.03932_0.11202_0.034.png
                gene_name: GGNBP2
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.036 

Current progress: 14 percent done.
GIT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.187005e-02	ci left: 5.923277e-01	ci right 6.116129e-01	k: 6020	n:10000
Cons ci ratio: 7.490173e-02	ci left: 2.068833e-01	ci right 2.230831e-01	k: 2149	n:10000
KS ci ratio: 8.467404e-03	ci left: 9.512738e-01	ci right 9.594583e-01	k: 9555	n:10000
GIT2   10000 perm   2 sec   (6293 perm/sec)   p_kst 9.555000e-01   p_cons 2.149000e-01   p_joint 6.020000e-01

Outputting figure to mutsig2_images.part000000000070/GIT2.7_2398_10000_0.9555_0.2149_0.602.png
                gene_name: GIT2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 16 percent done.
GJA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.851645e-02	ci left: 2.380779e-01	ci right 2.550700e-01	k: 2465	n:10000
Cons ci ratio: 6.971741e-02	ci left: 2.317548e-01	ci right 2.485968e-01	k: 2401	n:10000
KS ci ratio: 6.640765e-02	ci left: 2.497426e-01	ci right 2.669984e-01	k: 2583	n:10000
GJA1   10000 perm   1 sec   (7318 perm/sec)   p_kst 2.583000e-01   p_cons 2.401000e-01   p_joint 2.465000e-01

Outputting figure to mutsig2_images.part000000000070/GJA1.7_1153_10000_0.2583_0.2401_0.2465.png
                gene_name: GJA1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 18 percent done.
GEM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.584439e-02	ci left: 6.878865e-01	ci right 7.059987e-01	k: 6970	n:10000
Cons ci ratio: 1.277098e-02	ci left: 8.981605e-01	ci right 9.098029e-01	k: 9041	n:10000
KS ci ratio: 4.786111e-02	ci left: 3.917725e-01	ci right 4.110850e-01	k: 4014	n:10000
GEM   10000 perm   2 sec   (6660 perm/sec)   p_kst 4.014000e-01   p_cons 9.041000e-01   p_joint 6.970000e-01

Outputting figure to mutsig2_images.part000000000070/GEM.6_907_10000_0.4014_0.9041_0.697.png
                gene_name: GEM
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 20 percent done.
GEN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.007874e-02	ci left: 2.895409e-01	ci right 3.075765e-01	k: 2985	n:10000
Cons ci ratio: 1.023915e-02	ci left: 9.312316e-01	ci right 9.409125e-01	k: 9362	n:10000
KS ci ratio: 1.011368e-01	ci left: 1.239561e-01	ci right 1.372599e-01	k: 1305	n:10000
GEN1   10000 perm   2 sec   (5853 perm/sec)   p_kst 1.305000e-01   p_cons 9.362000e-01   p_joint 2.985000e-01

Joint ci ratio: 4.819595e-02	ci left: 2.425228e-01	ci right 2.545504e-01	k: 4970	n:20000
Cons ci ratio: 7.498010e-03	ci left: 9.282693e-01	ci right 9.353046e-01	k: 18637	n:20000
KS ci ratio: 7.017748e-02	ci left: 1.301938e-01	ci right 1.397126e-01	k: 2698	n:20000
GEN1   20000 perm   4 sec   (5309 perm/sec)   p_kst 1.349000e-01   p_cons 9.318500e-01   p_joint 2.485000e-01

Outputting figure to mutsig2_images.part000000000070/GEN1.6_2779_20000_0.1349_0.93185_0.2485.png
                gene_name: GEN1
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 21 percent done.
GHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.264646e-02	ci left: 2.172413e-01	ci right 2.337190e-01	k: 2254	n:10000
Cons ci ratio: 1.486677e-01	ci left: 6.014890e-02	ci right 6.990637e-02	k: 649	n:10000
KS ci ratio: 3.280251e-02	ci left: 5.783790e-01	ci right 5.977697e-01	k: 5881	n:10000
GHR   10000 perm   2 sec   (6519 perm/sec)   p_kst 5.881000e-01   p_cons 6.490000e-02   p_joint 2.254000e-01

Joint ci ratio: 5.157609e-02	ci left: 2.182868e-01	ci right 2.298935e-01	k: 4481	n:20000
Cons ci ratio: 1.067153e-01	ci left: 5.981772e-02	ci right 6.660995e-02	k: 1263	n:20000
KS ci ratio: 2.305286e-02	ci left: 5.842486e-01	ci right 5.979249e-01	k: 11822	n:20000
GHR   20000 perm   3 sec   (5810 perm/sec)   p_kst 5.911000e-01   p_cons 6.315000e-02   p_joint 2.240500e-01

Joint ci ratio: 4.437351e-02	ci left: 2.018322e-01	ci right 2.110248e-01	k: 6192	n:30000
Cons ci ratio: 8.887230e-02	ci left: 5.818716e-02	ci right 6.363159e-02	k: 1826	n:30000
KS ci ratio: 1.917810e-02	ci left: 5.764277e-01	ci right 5.876231e-01	k: 17461	n:30000
GHR   30000 perm   5 sec   (5558 perm/sec)   p_kst 5.820333e-01   p_cons 6.086667e-02   p_joint 2.064000e-01

Outputting figure to mutsig2_images.part000000000070/GHR.6_1953_30000_0.58203_0.060867_0.2064.png
                gene_name: GHR
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 23 percent done.
GGCX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.156770e-01	ci left: 9.701134e-02	ci right 1.090210e-01	k: 1029	n:10000
Cons ci ratio: 7.852074e-02	ci left: 1.916074e-01	ci right 2.073681e-01	k: 1994	n:10000
KS ci ratio: 1.268230e-01	ci left: 8.164409e-02	ci right 9.279774e-02	k: 871	n:10000
GGCX   10000 perm   2 sec   (6365 perm/sec)   p_kst 8.710000e-02   p_cons 1.994000e-01   p_joint 1.029000e-01

Joint ci ratio: 7.581674e-02	ci left: 1.134122e-01	ci right 1.223992e-01	k: 2357	n:20000
Cons ci ratio: 5.594393e-02	ci left: 1.915566e-01	ci right 2.026316e-01	k: 3941	n:20000
KS ci ratio: 9.041959e-02	ci left: 8.200290e-02	ci right 8.981798e-02	k: 1717	n:20000
GGCX   20000 perm   3 sec   (5728 perm/sec)   p_kst 8.585000e-02   p_cons 1.970500e-01   p_joint 1.178500e-01

Outputting figure to mutsig2_images.part000000000070/GGCX.5_2337_20000_0.08585_0.19705_0.11785.png
                gene_name: GGCX
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 25 percent done.
GHSR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.754707e-02	ci left: 8.256448e-01	ci right 8.403607e-01	k: 8331	n:10000
Cons ci ratio: 1.052715e-02	ci left: 9.277156e-01	ci right 9.376305e-01	k: 9328	n:10000
KS ci ratio: 2.794543e-02	ci left: 6.536391e-01	ci right 6.722659e-01	k: 6630	n:10000
GHSR   10000 perm   2 sec   (6519 perm/sec)   p_kst 6.630000e-01   p_cons 9.328000e-01   p_joint 8.331000e-01

Outputting figure to mutsig2_images.part000000000070/GHSR.5_1183_10000_0.663_0.9328_0.8331.png
                gene_name: GHSR
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 27 percent done.
GIMAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.267779e-02	ci left: 3.469066e-01	ci right 3.657772e-01	k: 3563	n:10000
Cons ci ratio: 6.654654e-02	ci left: 2.489515e-01	ci right 2.661899e-01	k: 2575	n:10000
KS ci ratio: 4.122974e-02	ci left: 4.648713e-01	ci right 4.845434e-01	k: 4747	n:10000
GIMAP5   10000 perm   2 sec   (6651 perm/sec)   p_kst 4.747000e-01   p_cons 2.575000e-01   p_joint 3.563000e-01

Outputting figure to mutsig2_images.part000000000070/GIMAP5.5_932_10000_0.4747_0.2575_0.3563.png
                gene_name: GIMAP5
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 29 percent done.
GDF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.137362e-02	ci left: 5.998573e-01	ci right 6.190789e-01	k: 6095	n:10000
Cons ci ratio: 3.527447e-02	ci left: 5.426902e-01	ci right 5.622792e-01	k: 5525	n:10000
KS ci ratio: 4.837274e-02	ci left: 3.866946e-01	ci right 4.059658e-01	k: 3963	n:10000
GDF3   10000 perm   1 sec   (7382 perm/sec)   p_kst 3.963000e-01   p_cons 5.525000e-01   p_joint 6.095000e-01

Outputting figure to mutsig2_images.part000000000070/GDF3.4_1103_10000_0.3963_0.5525_0.6095.png
                gene_name: GDF3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 30 percent done.
GFM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.299376e-02	ci left: 7.353260e-01	ci right 7.525317e-01	k: 7440	n:10000
Cons ci ratio: 3.971484e-02	ci left: 4.835542e-01	ci right 5.032497e-01	k: 4934	n:10000
KS ci ratio: 4.792091e-02	ci left: 3.911750e-01	ci right 4.104828e-01	k: 4008	n:10000
GFM1   10000 perm   2 sec   (6490 perm/sec)   p_kst 4.008000e-01   p_cons 4.934000e-01   p_joint 7.440000e-01

Outputting figure to mutsig2_images.part000000000070/GFM1.4_2328_10000_0.4008_0.4934_0.744.png
                gene_name: GFM1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 32 percent done.
GFPT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.005397e-01	ci left: 3.310027e-02	ci right 4.057267e-02	k: 367	n:10000
Cons ci ratio: 1.235896e-01	ci left: 8.572423e-02	ci right 9.711508e-02	k: 913	n:10000
KS ci ratio: 1.818499e-01	ci left: 4.035041e-02	ci right 4.851765e-02	k: 443	n:10000
GFPT1   10000 perm   1 sec   (6888 perm/sec)   p_kst 4.430000e-02   p_cons 9.130000e-02   p_joint 3.670000e-02

Joint ci ratio: 2.133397e-01	ci left: 1.482744e-02	ci right 1.841508e-02	k: 331	n:20000
Cons ci ratio: 8.846213e-02	ci left: 8.543163e-02	ci right 9.338821e-02	k: 1787	n:20000
KS ci ratio: 1.257988e-01	ci left: 4.338038e-02	ci right 4.925242e-02	k: 925	n:20000
GFPT1   20000 perm   3 sec   (6103 perm/sec)   p_kst 4.625000e-02   p_cons 8.935000e-02   p_joint 1.655000e-02

Joint ci ratio: 1.454663e-01	ci left: 2.191185e-02	ci right 2.538125e-02	k: 708	n:30000
Cons ci ratio: 7.287287e-02	ci left: 8.475205e-02	ci right 9.119467e-02	k: 2638	n:30000
KS ci ratio: 1.041784e-01	ci left: 4.271417e-02	ci right 4.744110e-02	k: 1351	n:30000
GFPT1   30000 perm   5 sec   (5832 perm/sec)   p_kst 4.503333e-02   p_cons 8.793333e-02   p_joint 2.360000e-02

Joint ci ratio: 1.324608e-01	ci left: 2.000416e-02	ci right 2.286591e-02	k: 856	n:40000
Cons ci ratio: 6.345330e-02	ci left: 8.432953e-02	ci right 8.988058e-02	k: 3483	n:40000
KS ci ratio: 9.044941e-02	ci left: 4.281783e-02	ci right 4.689857e-02	k: 1793	n:40000
GFPT1   40000 perm   7 sec   (5635 perm/sec)   p_kst 4.482500e-02   p_cons 8.707500e-02   p_joint 2.140000e-02

Joint ci ratio: 1.341106e-01	ci left: 1.567226e-02	ci right 1.794434e-02	k: 839	n:50000
Cons ci ratio: 5.683313e-02	ci left: 8.440549e-02	ci right 8.936260e-02	k: 4343	n:50000
KS ci ratio: 8.001734e-02	ci left: 4.396442e-02	ci right 4.764855e-02	k: 2289	n:50000
GFPT1   50000 perm   9 sec   (5479 perm/sec)   p_kst 4.578000e-02   p_cons 8.686000e-02   p_joint 1.678000e-02

Joint ci ratio: 1.123573e-01	ci left: 1.876505e-02	ci right 2.101506e-02	k: 1192	n:60000
Cons ci ratio: 5.194033e-02	ci left: 8.444364e-02	ci right 8.896310e-02	k: 5201	n:60000
KS ci ratio: 7.286517e-02	ci left: 4.433746e-02	ci right 4.770663e-02	k: 2760	n:60000
GFPT1   60000 perm   11 sec   (5351 perm/sec)   p_kst 4.600000e-02   p_cons 8.668333e-02   p_joint 1.986667e-02

Joint ci ratio: 1.030760e-01	ci left: 1.919845e-02	ci right 2.129873e-02	k: 1416	n:70000
Cons ci ratio: 4.791476e-02	ci left: 8.517652e-02	ci right 8.937205e-02	k: 6108	n:70000
KS ci ratio: 6.742903e-02	ci left: 4.450201e-02	ci right 4.762147e-02	k: 3223	n:70000
GFPT1   70000 perm   13 sec   (5235 perm/sec)   p_kst 4.604286e-02   p_cons 8.725714e-02   p_joint 2.022857e-02

Joint ci ratio: 1.096925e-01	ci left: 1.484992e-02	ci right 1.658546e-02	k: 1256	n:80000
Cons ci ratio: 4.472100e-02	ci left: 8.566204e-02	ci right 8.959292e-02	k: 7009	n:80000
KS ci ratio: 6.332289e-02	ci left: 4.426313e-02	ci right 4.716993e-02	k: 3656	n:80000
GFPT1   80000 perm   16 sec   (5126 perm/sec)   p_kst 4.570000e-02   p_cons 8.761250e-02   p_joint 1.570000e-02

Joint ci ratio: 1.037598e-01	ci left: 1.480048e-02	ci right 1.643096e-02	k: 1404	n:90000
Cons ci ratio: 4.225227e-02	ci left: 8.544160e-02	ci right 8.914061e-02	k: 7855	n:90000
KS ci ratio: 5.972521e-02	ci left: 4.431189e-02	ci right 4.705082e-02	k: 4110	n:90000
GFPT1   90000 perm   18 sec   (5015 perm/sec)   p_kst 4.566667e-02   p_cons 8.727778e-02   p_joint 1.560000e-02

Joint ci ratio: 1.017682e-01	ci left: 1.387544e-02	ci right 1.537291e-02	k: 1461	n:100000
Cons ci ratio: 4.006114e-02	ci left: 8.562683e-02	ci right 8.913715e-02	k: 8737	n:100000
KS ci ratio: 5.680892e-02	ci left: 4.415737e-02	ci right 4.674908e-02	k: 4544	n:100000
GFPT1   100000 perm   20 sec   (4920 perm/sec)   p_kst 4.544000e-02   p_cons 8.737000e-02   p_joint 1.461000e-02

Joint ci ratio: 9.649173e-02	ci left: 1.406806e-02	ci right 1.550314e-02	k: 1625	n:110000
Cons ci ratio: 3.813554e-02	ci left: 8.596269e-02	ci right 8.931364e-02	k: 9639	n:110000
KS ci ratio: 5.424196e-02	ci left: 4.409645e-02	ci right 4.656396e-02	k: 4985	n:110000
GFPT1   110000 perm   23 sec   (4811 perm/sec)   p_kst 4.531818e-02   p_cons 8.762727e-02   p_joint 1.477273e-02

Outputting figure to mutsig2_images.part000000000070/GFPT1.4_2122_110000_0.045318_0.087627_0.014773.png
                gene_name: GFPT1
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.016 

Current progress: 34 percent done.
GFPT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.514227e-02	ci left: 8.634550e-01	ci right 8.767286e-01	k: 8702	n:10000
Cons ci ratio: 4.426972e-02	ci left: 4.296413e-01	ci right 4.491941e-01	k: 4394	n:10000
KS ci ratio: 2.005282e-02	ci left: 7.845188e-01	ci right 8.005105e-01	k: 7926	n:10000
GFPT2   10000 perm   1 sec   (6789 perm/sec)   p_kst 7.926000e-01   p_cons 4.394000e-01   p_joint 8.702000e-01

Outputting figure to mutsig2_images.part000000000070/GFPT2.4_2125_10000_0.7926_0.4394_0.8702.png
                gene_name: GFPT2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 36 percent done.
GGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.472158e-02	ci left: 5.505053e-01	ci right 5.700595e-01	k: 5603	n:10000
Cons ci ratio: 3.086850e-02	ci left: 6.075902e-01	ci right 6.267415e-01	k: 6172	n:10000
KS ci ratio: 5.206347e-02	ci left: 3.522739e-01	ci right 3.712067e-01	k: 3617	n:10000
GGN   10000 perm   1 sec   (7360 perm/sec)   p_kst 3.617000e-01   p_cons 6.172000e-01   p_joint 5.603000e-01

Outputting figure to mutsig2_images.part000000000070/GGN.4_1967_10000_0.3617_0.6172_0.5603.png
                gene_name: GGN
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 38 percent done.
GGT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.957624e-02	ci left: 7.924290e-01	ci right 8.081956e-01	k: 8004	n:10000
Cons ci ratio: 2.368812e-02	ci left: 7.237072e-01	ci right 7.411572e-01	k: 7325	n:10000
KS ci ratio: 4.014615e-02	ci left: 4.781577e-01	ci right 4.978493e-01	k: 4880	n:10000
GGT7   10000 perm   1 sec   (7274 perm/sec)   p_kst 4.880000e-01   p_cons 7.325000e-01   p_joint 8.004000e-01

Outputting figure to mutsig2_images.part000000000070/GGT7.4_2049_10000_0.488_0.7325_0.8004.png
                gene_name: GGT7
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 39 percent done.
GIGYF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.621153e-02	ci left: 5.296705e-01	ci right 5.493065e-01	k: 5395	n:10000
Cons ci ratio: 4.594381e-02	ci left: 4.114968e-01	ci right 4.309491e-01	k: 4212	n:10000
KS ci ratio: 4.247362e-02	ci left: 4.500946e-01	ci right 4.697287e-01	k: 4599	n:10000
GIGYF1   10000 perm   2 sec   (5651 perm/sec)   p_kst 4.599000e-01   p_cons 4.212000e-01   p_joint 5.395000e-01

Outputting figure to mutsig2_images.part000000000070/GIGYF1.4_3204_10000_0.4599_0.4212_0.5395.png
                gene_name: GIGYF1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 41 percent done.
GIMAP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.054868e-02	ci left: 2.275079e-01	ci right 2.442463e-01	k: 2358	n:10000
Cons ci ratio: 7.726487e-02	ci left: 1.967302e-01	ci right 2.126422e-01	k: 2046	n:10000
KS ci ratio: 6.684359e-02	ci left: 2.472706e-01	ci right 2.644719e-01	k: 2558	n:10000
GIMAP6   10000 perm   1 sec   (7504 perm/sec)   p_kst 2.558000e-01   p_cons 2.046000e-01   p_joint 2.358000e-01

Outputting figure to mutsig2_images.part000000000070/GIMAP6.4_887_10000_0.2558_0.2046_0.2358.png
                gene_name: GIMAP6
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 43 percent done.
GIMAP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.328347e-02	ci left: 7.304755e-01	ci right 7.477850e-01	k: 7392	n:10000
Cons ci ratio: 2.885105e-02	ci left: 6.391508e-01	ci right 6.579626e-01	k: 6486	n:10000
KS ci ratio: 3.492635e-02	ci left: 5.475994e-01	ci right 5.671671e-01	k: 5574	n:10000
GIMAP7   10000 perm   2 sec   (6664 perm/sec)   p_kst 5.574000e-01   p_cons 6.486000e-01   p_joint 7.392000e-01

Outputting figure to mutsig2_images.part000000000070/GIMAP7.4_907_10000_0.5574_0.6486_0.7392.png
                gene_name: GIMAP7
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 45 percent done.
GIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.778928e-02	ci left: 6.561554e-01	ci right 6.747481e-01	k: 6655	n:10000
KS ci ratio: 1.410615e-02	ci left: 8.789942e-01	ci right 8.915804e-01	k: 8854	n:10000
GIN1   10000 perm   1 sec   (6693 perm/sec)   p_kst 8.854000e-01   p_cons 6.655000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GIN1.4_1597_10000_0.8854_0.6655_1.png
                gene_name: GIN1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
GIPC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.534259e-02	ci left: 8.603917e-01	ci right 8.737937e-01	k: 8672	n:10000
KS ci ratio: 1.598226e-02	ci left: 8.504946e-01	ci right 8.642965e-01	k: 8575	n:10000
GIPC2   10000 perm   1 sec   (7134 perm/sec)   p_kst 8.575000e-01   p_cons 8.672000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GIPC2.4_972_10000_0.8575_0.8672_1.png
                gene_name: GIPC2
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
GDF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.187607e-02	ci left: 2.774536e-01	ci right 2.952710e-01	k: 2863	n:10000
Cons ci ratio: 7.695773e-02	ci left: 1.980113e-01	ci right 2.139604e-01	k: 2059	n:10000
KS ci ratio: 5.685557e-02	ci left: 3.129444e-01	ci right 3.313594e-01	k: 3221	n:10000
GDF11   10000 perm   1 sec   (7408 perm/sec)   p_kst 3.221000e-01   p_cons 2.059000e-01   p_joint 2.863000e-01

Outputting figure to mutsig2_images.part000000000070/GDF11.3_1236_10000_0.3221_0.2059_0.2863.png
                gene_name: GDF11
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 50 percent done.
GDF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.964782e-01	ci left: 3.028617e-03	ci right 5.672985e-03	k: 42	n:10000
Cons ci ratio: 2.625735e-01	ci left: 1.893425e-02	ci right 2.474894e-02	k: 217	n:10000
KS ci ratio: 3.209154e-01	ci left: 1.234131e-02	ci right 1.714746e-02	k: 146	n:10000
GDF6   10000 perm   1 sec   (7309 perm/sec)   p_kst 1.460000e-02   p_cons 2.170000e-02   p_joint 4.200000e-03

Joint ci ratio: 2.845415e-01	ci left: 8.062881e-03	ci right 1.078261e-02	k: 187	n:20000
Cons ci ratio: 1.872141e-01	ci left: 1.943921e-02	ci right 2.350157e-02	k: 428	n:20000
KS ci ratio: 2.227351e-01	ci left: 1.355014e-02	ci right 1.699289e-02	k: 304	n:20000
GDF6   20000 perm   3 sec   (6380 perm/sec)   p_kst 1.520000e-02   p_cons 2.140000e-02   p_joint 9.350000e-03

Joint ci ratio: 3.225177e-01	ci left: 4.110775e-03	ci right 5.720741e-03	k: 146	n:30000
Cons ci ratio: 1.524378e-01	ci left: 1.992058e-02	ci right 2.323964e-02	k: 646	n:30000
KS ci ratio: 1.811615e-01	ci left: 1.397332e-02	ci right 1.678834e-02	k: 460	n:30000
GDF6   30000 perm   5 sec   (6084 perm/sec)   p_kst 1.533333e-02   p_cons 2.153333e-02   p_joint 4.866667e-03

Joint ci ratio: 2.973832e-01	ci left: 3.682473e-03	ci right 4.991094e-03	k: 172	n:40000
Cons ci ratio: 1.340683e-01	ci left: 1.952050e-02	ci right 2.234965e-02	k: 836	n:40000
KS ci ratio: 1.558218e-01	ci left: 1.436027e-02	ci right 1.681079e-02	k: 622	n:40000
GDF6   40000 perm   7 sec   (5879 perm/sec)   p_kst 1.555000e-02   p_cons 2.090000e-02   p_joint 4.300000e-03

Joint ci ratio: 1.563227e-01	ci left: 1.144840e-02	ci right 1.340881e-02	k: 620	n:50000
Cons ci ratio: 1.223402e-01	ci left: 1.888779e-02	ci right 2.136837e-02	k: 1005	n:50000
KS ci ratio: 1.389868e-01	ci left: 1.457062e-02	ci right 1.676614e-02	k: 782	n:50000
GDF6   50000 perm   9 sec   (5648 perm/sec)   p_kst 1.564000e-02   p_cons 2.010000e-02   p_joint 1.240000e-02

Joint ci ratio: 1.509358e-01	ci left: 1.027706e-02	ci right 1.197073e-02	k: 666	n:60000
Cons ci ratio: 1.125983e-01	ci left: 1.868402e-02	ci right 2.092943e-02	k: 1187	n:60000
KS ci ratio: 1.269184e-01	ci left: 1.465587e-02	ci right 1.665804e-02	k: 938	n:60000
GDF6   60000 perm   11 sec   (5514 perm/sec)   p_kst 1.563333e-02   p_cons 1.978333e-02   p_joint 1.110000e-02

Joint ci ratio: 1.979418e-01	ci left: 5.019877e-03	ci right 6.135994e-03	k: 389	n:70000
Cons ci ratio: 1.050608e-01	ci left: 1.847456e-02	ci right 2.053697e-02	k: 1364	n:70000
KS ci ratio: 1.169895e-01	ci left: 1.486144e-02	ci right 1.672187e-02	k: 1104	n:70000
GDF6   70000 perm   13 sec   (5400 perm/sec)   p_kst 1.577143e-02   p_cons 1.948571e-02   p_joint 5.557143e-03

Joint ci ratio: 2.019517e-01	ci left: 4.214097e-03	ci right 5.172367e-03	k: 374	n:80000
Cons ci ratio: 9.846874e-02	ci left: 1.846764e-02	ci right 2.039243e-02	k: 1553	n:80000
KS ci ratio: 1.104085e-01	ci left: 1.465535e-02	ci right 1.638005e-02	k: 1240	n:80000
GDF6   80000 perm   15 sec   (5292 perm/sec)   p_kst 1.550000e-02   p_cons 1.941250e-02   p_joint 4.675000e-03

Joint ci ratio: 2.326519e-01	ci left: 2.778742e-03	ci right 3.520521e-03	k: 282	n:90000
Cons ci ratio: 9.212111e-02	ci left: 1.881291e-02	ci right 2.064046e-02	k: 1774	n:90000
KS ci ratio: 1.051755e-01	ci left: 1.439995e-02	ci right 1.600929e-02	k: 1367	n:90000
GDF6   90000 perm   17 sec   (5192 perm/sec)   p_kst 1.518889e-02   p_cons 1.971111e-02   p_joint 3.133333e-03

Joint ci ratio: 2.413983e-01	ci left: 2.312672e-03	ci right 2.956717e-03	k: 262	n:100000
Cons ci ratio: 8.746672e-02	ci left: 1.882807e-02	ci right 2.055995e-02	k: 1968	n:100000
KS ci ratio: 1.000796e-01	ci left: 1.435324e-02	ci right 1.587507e-02	k: 1510	n:100000
GDF6   100000 perm   20 sec   (5094 perm/sec)   p_kst 1.510000e-02   p_cons 1.968000e-02   p_joint 2.620000e-03

Joint ci ratio: 1.282055e-01	ci left: 7.886714e-03	ci right 8.975806e-03	k: 926	n:110000
Cons ci ratio: 8.375000e-02	ci left: 1.870882e-02	ci right 2.035302e-02	k: 2147	n:110000
KS ci ratio: 9.476155e-02	ci left: 1.459178e-02	ci right 1.605212e-02	k: 1684	n:110000
GDF6   110000 perm   22 sec   (4995 perm/sec)   p_kst 1.530909e-02   p_cons 1.951818e-02   p_joint 8.418182e-03

Joint ci ratio: 1.279037e-01	ci left: 7.269670e-03	ci right 8.271005e-03	k: 931	n:120000
Cons ci ratio: 8.025921e-02	ci left: 1.870878e-02	ci right 2.028123e-02	k: 2338	n:120000
KS ci ratio: 9.060679e-02	ci left: 1.466198e-02	ci right 1.606159e-02	k: 1842	n:120000
GDF6   120000 perm   24 sec   (4902 perm/sec)   p_kst 1.535000e-02   p_cons 1.948333e-02   p_joint 7.758333e-03

Joint ci ratio: 1.442802e-01	ci left: 5.238642e-03	ci right 6.060568e-03	k: 733	n:130000
Cons ci ratio: 7.714034e-02	ci left: 1.872505e-02	ci right 2.023496e-02	k: 2531	n:130000
KS ci ratio: 8.726516e-02	ci left: 1.461717e-02	ci right 1.595842e-02	k: 1986	n:130000
GDF6   130000 perm   27 sec   (4797 perm/sec)   p_kst 1.527692e-02   p_cons 1.946923e-02   p_joint 5.638462e-03

Joint ci ratio: 1.444085e-01	ci left: 4.857499e-03	ci right 5.620357e-03	k: 732	n:140000
Cons ci ratio: 7.417866e-02	ci left: 1.883117e-02	ci right 2.028882e-02	k: 2737	n:140000
KS ci ratio: 8.408776e-02	ci left: 1.464254e-02	ci right 1.593479e-02	k: 2139	n:140000
GDF6   140000 perm   30 sec   (4716 perm/sec)   p_kst 1.527857e-02   p_cons 1.955000e-02   p_joint 5.228571e-03

Joint ci ratio: 1.419261e-01	ci left: 4.700762e-03	ci right 5.425239e-03	k: 758	n:150000
Cons ci ratio: 7.168300e-02	ci left: 1.884551e-02	ci right 2.025315e-02	k: 2931	n:150000
KS ci ratio: 8.139632e-02	ci left: 1.460650e-02	ci right 1.585235e-02	k: 2283	n:150000
GDF6   150000 perm   32 sec   (4640 perm/sec)   p_kst 1.522000e-02   p_cons 1.954000e-02   p_joint 5.053333e-03

Joint ci ratio: 1.515800e-01	ci left: 3.846903e-03	ci right 4.483770e-03	k: 665	n:160000
Cons ci ratio: 6.942338e-02	ci left: 1.885878e-02	ci right 2.022121e-02	k: 3125	n:160000
KS ci ratio: 7.896430e-02	ci left: 1.456941e-02	ci right 1.577325e-02	k: 2426	n:160000
GDF6   160000 perm   35 sec   (4558 perm/sec)   p_kst 1.516250e-02   p_cons 1.953125e-02   p_joint 4.156250e-03

Joint ci ratio: 1.357322e-01	ci left: 4.550854e-03	ci right 5.219144e-03	k: 829	n:170000
Cons ci ratio: 6.738551e-02	ci left: 1.885953e-02	ci right 2.018046e-02	k: 3317	n:170000
KS ci ratio: 7.661701e-02	ci left: 1.458334e-02	ci right 1.575092e-02	k: 2577	n:170000
GDF6   170000 perm   38 sec   (4483 perm/sec)   p_kst 1.515882e-02   p_cons 1.951176e-02   p_joint 4.876471e-03

Joint ci ratio: 1.342955e-01	ci left: 4.394627e-03	ci right 5.032597e-03	k: 847	n:180000
Cons ci ratio: 6.517710e-02	ci left: 1.905751e-02	ci right 2.034691e-02	k: 3545	n:180000
KS ci ratio: 7.450892e-02	ci left: 1.457984e-02	ci right 1.571363e-02	k: 2725	n:180000
GDF6   180000 perm   41 sec   (4412 perm/sec)   p_kst 1.513889e-02   p_cons 1.969444e-02   p_joint 4.705556e-03

Joint ci ratio: 1.356033e-01	ci left: 4.081918e-03	ci right 4.680727e-03	k: 831	n:190000
Cons ci ratio: 6.342146e-02	ci left: 1.908502e-02	ci right 2.034022e-02	k: 3744	n:190000
KS ci ratio: 7.257860e-02	ci left: 1.457194e-02	ci right 1.567451e-02	k: 2872	n:190000
GDF6   190000 perm   44 sec   (4328 perm/sec)   p_kst 1.511579e-02   p_cons 1.970526e-02   p_joint 4.373684e-03

Joint ci ratio: 1.467496e-01	ci left: 3.294058e-03	ci right 3.820493e-03	k: 710	n:200000
Cons ci ratio: 6.183244e-02	ci left: 1.909050e-02	ci right 2.031347e-02	k: 3939	n:200000
KS ci ratio: 7.154023e-02	ci left: 1.426060e-02	ci right 1.532353e-02	k: 2957	n:200000
GDF6   200000 perm   47 sec   (4269 perm/sec)   p_kst 1.478500e-02   p_cons 1.969500e-02   p_joint 3.550000e-03

Joint ci ratio: 1.419355e-01	ci left: 3.362114e-03	ci right 3.880308e-03	k: 759	n:210000
Cons ci ratio: 6.034973e-02	ci left: 1.910051e-02	ci right 2.029375e-02	k: 4135	n:210000
KS ci ratio: 6.958792e-02	ci left: 1.436743e-02	ci right 1.540793e-02	k: 3125	n:210000
GDF6   210000 perm   50 sec   (4211 perm/sec)   p_kst 1.488095e-02   p_cons 1.969048e-02   p_joint 3.614286e-03

Joint ci ratio: 1.456474e-01	ci left: 3.042740e-03	ci right 3.525039e-03	k: 721	n:220000
Cons ci ratio: 5.917117e-02	ci left: 1.898002e-02	ci right 2.014178e-02	k: 4302	n:220000
KS ci ratio: 6.791285e-02	ci left: 1.441128e-02	ci right 1.542883e-02	k: 3281	n:220000
GDF6   220000 perm   53 sec   (4154 perm/sec)   p_kst 1.491364e-02   p_cons 1.955455e-02   p_joint 3.277273e-03

Joint ci ratio: 1.522507e-01	ci left: 2.655068e-03	ci right 3.096738e-03	k: 660	n:230000
Cons ci ratio: 5.788756e-02	ci left: 1.898165e-02	ci right 2.011746e-02	k: 4495	n:230000
KS ci ratio: 6.651048e-02	ci left: 1.438316e-02	ci right 1.537695e-02	k: 3421	n:230000
GDF6   230000 perm   56 sec   (4096 perm/sec)   p_kst 1.487391e-02   p_cons 1.954348e-02   p_joint 2.869565e-03

Joint ci ratio: 1.490169e-01	ci left: 2.660720e-03	ci right 3.093091e-03	k: 689	n:240000
Cons ci ratio: 5.656111e-02	ci left: 1.906557e-02	ci right 2.017941e-02	k: 4708	n:240000
KS ci ratio: 6.531263e-02	ci left: 1.430429e-02	ci right 1.527415e-02	k: 3548	n:240000
GDF6   240000 perm   59 sec   (4043 perm/sec)   p_kst 1.478333e-02   p_cons 1.961667e-02   p_joint 2.870833e-03

Joint ci ratio: 1.329758e-01	ci left: 3.233595e-03	ci right 3.698034e-03	k: 865	n:250000
Cons ci ratio: 5.531610e-02	ci left: 1.914699e-02	ci right 2.024018e-02	k: 4922	n:250000
KS ci ratio: 6.400953e-02	ci left: 1.430667e-02	ci right 1.525663e-02	k: 3694	n:250000
GDF6   250000 perm   63 sec   (3987 perm/sec)   p_kst 1.477600e-02   p_cons 1.968800e-02   p_joint 3.460000e-03

Joint ci ratio: 1.302225e-01	ci left: 3.246850e-03	ci right 3.702790e-03	k: 902	n:260000
Cons ci ratio: 5.420908e-02	ci left: 1.918066e-02	ci right 2.025316e-02	k: 5125	n:260000
KS ci ratio: 6.279803e-02	ci left: 1.430148e-02	ci right 1.523246e-02	k: 3838	n:260000
GDF6   260000 perm   66 sec   (3932 perm/sec)   p_kst 1.476154e-02   p_cons 1.971154e-02   p_joint 3.469231e-03

Joint ci ratio: 1.439042e-01	ci left: 2.543474e-03	ci right 2.941393e-03	k: 739	n:270000
Cons ci ratio: 5.316597e-02	ci left: 1.921203e-02	ci right 2.026498e-02	k: 5328	n:270000
KS ci ratio: 6.161358e-02	ci left: 1.431506e-02	ci right 1.522873e-02	k: 3987	n:270000
GDF6   270000 perm   70 sec   (3875 perm/sec)   p_kst 1.476667e-02   p_cons 1.973333e-02   p_joint 2.737037e-03

Joint ci ratio: 1.414412e-01	ci left: 2.542178e-03	ci right 2.932513e-03	k: 765	n:280000
Cons ci ratio: 5.211840e-02	ci left: 1.928718e-02	ci right 2.032280e-02	k: 5544	n:280000
KS ci ratio: 6.044924e-02	ci left: 1.434894e-02	ci right 1.524686e-02	k: 4142	n:280000
GDF6   280000 perm   73 sec   (3820 perm/sec)   p_kst 1.479286e-02   p_cons 1.980000e-02   p_joint 2.732143e-03

Joint ci ratio: 1.394541e-01	ci left: 2.527712e-03	ci right 2.909920e-03	k: 787	n:290000
Cons ci ratio: 5.119391e-02	ci left: 1.930966e-02	ci right 2.032755e-02	k: 5746	n:290000
KS ci ratio: 5.950327e-02	ci left: 1.430588e-02	ci right 1.518661e-02	k: 4275	n:290000
GDF6   290000 perm   77 sec   (3767 perm/sec)   p_kst 1.474138e-02   p_cons 1.981379e-02   p_joint 2.713793e-03

Joint ci ratio: 1.378046e-01	ci left: 2.504589e-03	ci right 2.878454e-03	k: 806	n:300000
Cons ci ratio: 5.020940e-02	ci left: 1.941311e-02	ci right 2.041620e-02	k: 5973	n:300000
KS ci ratio: 5.850616e-02	ci left: 1.431179e-02	ci right 1.517762e-02	k: 4422	n:300000
GDF6   300000 perm   81 sec   (3713 perm/sec)   p_kst 1.474000e-02   p_cons 1.991000e-02   p_joint 2.686667e-03

Joint ci ratio: 1.350693e-01	ci left: 2.526616e-03	ci right 2.895681e-03	k: 839	n:310000
Cons ci ratio: 4.938531e-02	ci left: 1.942719e-02	ci right 2.041407e-02	k: 6174	n:310000
KS ci ratio: 5.753838e-02	ci left: 1.432698e-02	ci right 1.517891e-02	k: 4572	n:310000
GDF6   310000 perm   85 sec   (3664 perm/sec)   p_kst 1.474839e-02   p_cons 1.991613e-02   p_joint 2.706452e-03

Joint ci ratio: 1.331807e-01	ci left: 2.520142e-03	ci right 2.882707e-03	k: 863	n:320000
Cons ci ratio: 4.860830e-02	ci left: 1.943435e-02	ci right 2.040562e-02	k: 6373	n:320000
KS ci ratio: 5.659278e-02	ci left: 1.435365e-02	ci right 1.519268e-02	k: 4726	n:320000
GDF6   320000 perm   89 sec   (3616 perm/sec)   p_kst 1.476875e-02   p_cons 1.991562e-02   p_joint 2.696875e-03

Joint ci ratio: 1.314435e-01	ci left: 2.511163e-03	ci right 2.867356e-03	k: 886	n:330000
Cons ci ratio: 4.787428e-02	ci left: 1.943520e-02	ci right 2.039144e-02	k: 6570	n:330000
KS ci ratio: 5.565760e-02	ci left: 1.439674e-02	ci right 1.522393e-02	k: 4886	n:330000
GDF6   330000 perm   92 sec   (3569 perm/sec)   p_kst 1.480606e-02   p_cons 1.990909e-02   p_joint 2.684848e-03

Joint ci ratio: 1.290634e-01	ci left: 2.531204e-03	ci right 2.883240e-03	k: 919	n:340000
Cons ci ratio: 4.704150e-02	ci left: 1.954367e-02	ci right 2.048807e-02	k: 6804	n:340000
KS ci ratio: 5.486669e-02	ci left: 1.438518e-02	ci right 1.519959e-02	k: 5028	n:340000
GDF6   340000 perm   96 sec   (3525 perm/sec)   p_kst 1.478824e-02   p_cons 2.001176e-02   p_joint 2.702941e-03

Joint ci ratio: 1.264758e-01	ci left: 2.563987e-03	ci right 2.912898e-03	k: 957	n:350000
Cons ci ratio: 4.638538e-02	ci left: 1.953309e-02	ci right 2.046346e-02	k: 6998	n:350000
KS ci ratio: 5.399739e-02	ci left: 1.443356e-02	ci right 1.523736e-02	k: 5191	n:350000
GDF6   350000 perm   101 sec   (3478 perm/sec)   p_kst 1.483143e-02   p_cons 1.999429e-02   p_joint 2.734286e-03

Joint ci ratio: 1.122235e-01	ci left: 3.188166e-03	ci right 3.569897e-03	k: 1215	n:360000
Cons ci ratio: 4.573003e-02	ci left: 1.954515e-02	ci right 2.046260e-02	k: 7200	n:360000
KS ci ratio: 5.326413e-02	ci left: 1.442726e-02	ci right 1.521947e-02	k: 5335	n:360000
GDF6   360000 perm   105 sec   (3434 perm/sec)   p_kst 1.481944e-02   p_cons 2.000000e-02   p_joint 3.375000e-03

Joint ci ratio: 1.174821e-01	ci left: 2.823707e-03	ci right 3.178742e-03	k: 1109	n:370000
Cons ci ratio: 4.517960e-02	ci left: 1.948983e-02	ci right 2.039338e-02	k: 7377	n:370000
KS ci ratio: 5.263801e-02	ci left: 1.437869e-02	ci right 1.515867e-02	k: 5463	n:370000
GDF6   370000 perm   109 sec   (3390 perm/sec)   p_kst 1.476486e-02   p_cons 1.993784e-02   p_joint 2.997297e-03

Joint ci ratio: 1.157225e-01	ci left: 2.836264e-03	ci right 3.187172e-03	k: 1143	n:380000
Cons ci ratio: 4.452247e-02	ci left: 1.954681e-02	ci right 2.043948e-02	k: 7596	n:380000
KS ci ratio: 5.194867e-02	ci left: 1.437949e-02	ci right 1.514899e-02	k: 5609	n:380000
GDF6   380000 perm   113 sec   (3351 perm/sec)   p_kst 1.476053e-02   p_cons 1.998947e-02   p_joint 3.007895e-03

Joint ci ratio: 1.186218e-01	ci left: 2.626630e-03	ci right 2.960313e-03	k: 1088	n:390000
Cons ci ratio: 4.399670e-02	ci left: 1.950964e-02	ci right 2.038982e-02	k: 7779	n:390000
KS ci ratio: 5.132192e-02	ci left: 1.436006e-02	ci right 1.511897e-02	k: 5747	n:390000
GDF6   390000 perm   118 sec   (3313 perm/sec)   p_kst 1.473590e-02   p_cons 1.994615e-02   p_joint 2.789744e-03

Joint ci ratio: 1.178151e-01	ci left: 2.597353e-03	ci right 2.924916e-03	k: 1103	n:400000
Cons ci ratio: 4.346408e-02	ci left: 1.949664e-02	ci right 2.036533e-02	k: 7971	n:400000
KS ci ratio: 5.080061e-02	ci left: 1.429475e-02	ci right 1.504231e-02	k: 5866	n:400000
GDF6   400000 perm   122 sec   (3274 perm/sec)   p_kst 1.466500e-02   p_cons 1.992750e-02   p_joint 2.757500e-03

Joint ci ratio: 1.164520e-01	ci left: 2.595559e-03	ci right 2.918849e-03	k: 1129	n:410000
Cons ci ratio: 4.286737e-02	ci left: 1.955916e-02	ci right 2.041837e-02	k: 8194	n:410000
KS ci ratio: 5.017589e-02	ci left: 1.430011e-02	ci right 1.503848e-02	k: 6013	n:410000
GDF6   410000 perm   127 sec   (3235 perm/sec)   p_kst 1.466585e-02   p_cons 1.998537e-02   p_joint 2.753659e-03

Joint ci ratio: 1.152352e-01	ci left: 2.589247e-03	ci right 2.908151e-03	k: 1153	n:420000
Cons ci ratio: 4.237426e-02	ci left: 1.954574e-02	ci right 2.039424e-02	k: 8386	n:420000
KS ci ratio: 4.960636e-02	ci left: 1.428645e-02	ci right 1.501551e-02	k: 6152	n:420000
GDF6   420000 perm   131 sec   (3195 perm/sec)   p_kst 1.464762e-02   p_cons 1.996667e-02   p_joint 2.745238e-03

Joint ci ratio: 1.134776e-01	ci left: 2.610359e-03	ci right 2.926632e-03	k: 1189	n:430000
Cons ci ratio: 4.189281e-02	ci left: 1.953759e-02	ci right 2.037587e-02	k: 8580	n:430000
KS ci ratio: 4.903998e-02	ci left: 1.428266e-02	ci right 1.500297e-02	k: 6295	n:430000
GDF6   430000 perm   136 sec   (3160 perm/sec)   p_kst 1.463953e-02   p_cons 1.995349e-02   p_joint 2.765116e-03

Joint ci ratio: 1.122581e-01	ci left: 2.608456e-03	ci right 2.920877e-03	k: 1215	n:440000
Cons ci ratio: 4.139612e-02	ci left: 1.955911e-02	ci right 2.038813e-02	k: 8787	n:440000
KS ci ratio: 4.848492e-02	ci left: 1.428358e-02	ci right 1.499556e-02	k: 6440	n:440000
GDF6   440000 perm   141 sec   (3124 perm/sec)   p_kst 1.463636e-02   p_cons 1.997045e-02   p_joint 2.761364e-03

Joint ci ratio: 1.106314e-01	ci left: 2.628261e-03	ci right 2.938196e-03	k: 1251	n:450000
Cons ci ratio: 4.094224e-02	ci left: 1.955554e-02	ci right 2.037510e-02	k: 8983	n:450000
KS ci ratio: 4.794460e-02	ci left: 1.428670e-02	ci right 1.499068e-02	k: 6586	n:450000
GDF6   450000 perm   146 sec   (3092 perm/sec)   p_kst 1.463556e-02   p_cons 1.996222e-02   p_joint 2.780000e-03

Joint ci ratio: 1.140660e-01	ci left: 2.414760e-03	ci right 2.708953e-03	k: 1177	n:460000
Cons ci ratio: 4.045579e-02	ci left: 1.959737e-02	ci right 2.040870e-02	k: 9200	n:460000
KS ci ratio: 4.738982e-02	ci left: 1.430907e-02	ci right 1.500576e-02	k: 6741	n:460000
GDF6   460000 perm   150 sec   (3059 perm/sec)   p_kst 1.465435e-02   p_cons 2.000000e-02   p_joint 2.558696e-03

Joint ci ratio: 1.124072e-01	ci left: 2.435743e-03	ci right 2.727890e-03	k: 1212	n:470000
Cons ci ratio: 3.999060e-02	ci left: 1.963325e-02	ci right 2.043651e-02	k: 9415	n:470000
KS ci ratio: 4.689183e-02	ci left: 1.430739e-02	ci right 1.499648e-02	k: 6885	n:470000
GDF6   470000 perm   155 sec   (3029 perm/sec)   p_kst 1.464894e-02   p_cons 2.003191e-02   p_joint 2.578723e-03

Joint ci ratio: 1.109078e-01	ci left: 2.451829e-03	ci right 2.741727e-03	k: 1245	n:480000
Cons ci ratio: 3.958305e-02	ci left: 1.962643e-02	ci right 2.042104e-02	k: 9610	n:480000
KS ci ratio: 4.638243e-02	ci left: 1.432230e-02	ci right 1.500441e-02	k: 7037	n:480000
GDF6   480000 perm   160 sec   (2998 perm/sec)   p_kst 1.466042e-02   p_cons 2.002083e-02   p_joint 2.593750e-03

Joint ci ratio: 1.043924e-01	ci left: 2.719557e-03	ci right 3.021062e-03	k: 1405	n:490000
Cons ci ratio: 3.918976e-02	ci left: 1.961791e-02	ci right 2.040410e-02	k: 9804	n:490000
KS ci ratio: 4.580530e-02	ci left: 1.438909e-02	ci right 1.506564e-02	k: 7215	n:490000
GDF6   490000 perm   165 sec   (2968 perm/sec)   p_kst 1.472449e-02   p_cons 2.000816e-02   p_joint 2.867347e-03

Joint ci ratio: 7.490242e-02	ci left: 5.243877e-03	ci right 5.653886e-03	k: 2723	n:500000
Cons ci ratio: 3.878225e-02	ci left: 1.963552e-02	ci right 2.041405e-02	k: 10011	n:500000
KS ci ratio: 4.540213e-02	ci left: 1.435636e-02	ci right 1.502528e-02	k: 7344	n:500000
GDF6   500000 perm   170 sec   (2938 perm/sec)   p_kst 1.468800e-02   p_cons 2.002200e-02   p_joint 5.446000e-03

Outputting figure to mutsig2_images.part000000000070/GDF6.3_1376_500000_0.014688_0.020022_0.005446.png
                gene_name: GDF6
               theta_stop: 0.075 
                    nperm: 500000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.0054 
     ci_joint_bounds_left: 0.0052 
    ci_joint_bounds_right: 0.0057 

Current progress: 52 percent done.
GDF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.173850e-02	ci left: 7.563609e-01	ci right 7.730846e-01	k: 7648	n:10000
KS ci ratio: 2.686446e-02	ci left: 6.711587e-01	ci right 6.895361e-01	k: 6804	n:10000
GDF9   10000 perm   1 sec   (7109 perm/sec)   p_kst 6.804000e-01   p_cons 7.648000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GDF9.3_1373_10000_0.6804_0.7648_1.png
                gene_name: GDF9
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
GDPD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.621882e-02	ci left: 5.295704e-01	ci right 5.492067e-01	k: 5394	n:10000
Cons ci ratio: 6.597726e-02	ci left: 2.522150e-01	ci right 2.695245e-01	k: 2608	n:10000
KS ci ratio: 3.330595e-02	ci left: 5.709563e-01	ci right 5.903967e-01	k: 5807	n:10000
GDPD4   10000 perm   1 sec   (6756 perm/sec)   p_kst 5.807000e-01   p_cons 2.608000e-01   p_joint 5.394000e-01

Outputting figure to mutsig2_images.part000000000070/GDPD4.3_1623_10000_0.5807_0.2608_0.5394.png
                gene_name: GDPD4
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 55 percent done.
GEMIN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.269431e-02	ci left: 5.799842e-01	ci right 5.993635e-01	k: 5897	n:10000
KS ci ratio: 3.044550e-02	ci left: 6.141199e-01	ci right 6.332080e-01	k: 6237	n:10000
GEMIN4   10000 perm   2 sec   (6299 perm/sec)   p_kst 6.237000e-01   p_cons 5.897000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GEMIN4.3_3185_10000_0.6237_0.5897_1.png
                gene_name: GEMIN4
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
GEMIN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.834118e-02	ci left: 1.571841e-01	ci right 1.718119e-01	k: 1644	n:10000
Cons ci ratio: 1.665240e-01	ci left: 4.811345e-02	ci right 5.694952e-02	k: 524	n:10000
KS ci ratio: 3.648931e-02	ci left: 5.258660e-01	ci right 5.455132e-01	k: 5357	n:10000
GEMIN6   10000 perm   1 sec   (8322 perm/sec)   p_kst 5.357000e-01   p_cons 5.240000e-02   p_joint 1.644000e-01

Joint ci ratio: 6.633391e-02	ci left: 1.436968e-01	ci right 1.536056e-01	k: 2972	n:20000
Cons ci ratio: 1.190142e-01	ci left: 4.838015e-02	ci right 5.455108e-02	k: 1028	n:20000
KS ci ratio: 2.546319e-02	ci left: 5.353646e-01	ci right 5.492231e-01	k: 10846	n:20000
GEMIN6   20000 perm   3 sec   (7241 perm/sec)   p_kst 5.423000e-01   p_cons 5.140000e-02   p_joint 1.486000e-01

Joint ci ratio: 5.418669e-02	ci left: 1.444936e-01	ci right 1.525745e-01	k: 4455	n:30000
Cons ci ratio: 9.457150e-02	ci left: 5.159938e-02	ci right 5.675405e-02	k: 1624	n:30000
KS ci ratio: 2.087077e-02	ci left: 5.347402e-01	ci right 5.460520e-01	k: 16212	n:30000
GEMIN6   30000 perm   4 sec   (6766 perm/sec)   p_kst 5.404000e-01   p_cons 5.413333e-02   p_joint 1.485000e-01

Outputting figure to mutsig2_images.part000000000070/GEMIN6.3_512_30000_0.5404_0.054133_0.1485.png
                gene_name: GEMIN6
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 59 percent done.
GFI1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.422642e-02	ci left: 7.147204e-01	ci right 7.323492e-01	k: 7236	n:10000
Cons ci ratio: 6.760682e-02	ci left: 2.430195e-01	ci right 2.601254e-01	k: 2515	n:10000
KS ci ratio: 4.276542e-02	ci left: 4.467012e-01	ci right 4.663241e-01	k: 4565	n:10000
GFI1B   10000 perm   1 sec   (7507 perm/sec)   p_kst 4.565000e-01   p_cons 2.515000e-01   p_joint 7.236000e-01

Outputting figure to mutsig2_images.part000000000070/GFI1B.3_1017_10000_0.4565_0.2515_0.7236.png
                gene_name: GFI1B
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 61 percent done.
GFM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.966014e-02	ci left: 3.742535e-01	ci right 3.934142e-01	k: 3838	n:10000
KS ci ratio: 1.882593e-02	ci left: 8.048110e-01	ci right 8.202065e-01	k: 8126	n:10000
GFM2   10000 perm   2 sec   (6515 perm/sec)   p_kst 8.126000e-01   p_cons 3.838000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GFM2.3_2452_10000_0.8126_0.3838_1.png
                gene_name: GFM2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
GFOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.075896e-02	ci left: 3.640070e-01	ci right 3.830667e-01	k: 3735	n:10000
Cons ci ratio: 1.165822e-02	ci left: 9.132737e-01	ci right 9.240809e-01	k: 9188	n:10000
KS ci ratio: 7.721745e-02	ci left: 1.969273e-01	ci right 2.128450e-01	k: 2048	n:10000
GFOD1   10000 perm   1 sec   (7400 perm/sec)   p_kst 2.048000e-01   p_cons 9.188000e-01   p_joint 3.735000e-01

Outputting figure to mutsig2_images.part000000000070/GFOD1.3_1181_10000_0.2048_0.9188_0.3735.png
                gene_name: GFOD1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 64 percent done.
GGA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.821783e-02	ci left: 8.147659e-01	ci right 8.298458e-01	k: 8224	n:10000
Cons ci ratio: 1.118333e-02	ci left: 9.194566e-01	ci right 9.298944e-01	k: 9248	n:10000
KS ci ratio: 3.995386e-02	ci left: 4.805560e-01	ci right 5.002496e-01	k: 4904	n:10000
GGA3   10000 perm   1 sec   (6725 perm/sec)   p_kst 4.904000e-01   p_cons 9.248000e-01   p_joint 8.224000e-01

Outputting figure to mutsig2_images.part000000000070/GGA3.3_2328_10000_0.4904_0.9248_0.8224.png
                gene_name: GGA3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 66 percent done.
GGT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
GGT1   10000 perm   1 sec   (7555 perm/sec)   p_kst 1.000000e-04   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
GGT1   20000 perm   3 sec   (6672 perm/sec)   p_kst 5.000000e-05   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 6.440358e-01	ci left: 8.406024e-04	ci right 1.660923e-03	k: 36	n:30000
Cons ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
GGT1   30000 perm   5 sec   (6305 perm/sec)   p_kst 3.333333e-05   p_cons 3.333333e-05   p_joint 1.200000e-03

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
GGT1   40000 perm   7 sec   (6080 perm/sec)   p_kst 2.500000e-05   p_cons 2.500000e-05   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
GGT1   50000 perm   8 sec   (5903 perm/sec)   p_kst 2.000000e-05   p_cons 2.000000e-05   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
GGT1   60000 perm   10 sec   (5748 perm/sec)   p_kst 1.666667e-05   p_cons 1.666667e-05   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
GGT1   70000 perm   12 sec   (5606 perm/sec)   p_kst 1.428571e-05   p_cons 1.428571e-05   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
GGT1   80000 perm   15 sec   (5493 perm/sec)   p_kst 1.250000e-05   p_cons 1.250000e-05   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
GGT1   90000 perm   17 sec   (5383 perm/sec)   p_kst 1.111111e-05   p_cons 1.111111e-05   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
GGT1   100000 perm   19 sec   (5276 perm/sec)   p_kst 1.000000e-05   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
GGT1   110000 perm   21 sec   (5182 perm/sec)   p_kst 9.090909e-06   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
GGT1   120000 perm   24 sec   (5084 perm/sec)   p_kst 8.333333e-06   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
GGT1   130000 perm   26 sec   (4993 perm/sec)   p_kst 7.692308e-06   p_cons 7.692308e-06   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
GGT1   140000 perm   29 sec   (4902 perm/sec)   p_kst 7.142857e-06   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
GGT1   150000 perm   31 sec   (4816 perm/sec)   p_kst 6.666667e-06   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
GGT1   160000 perm   34 sec   (4708 perm/sec)   p_kst 6.250000e-06   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
GGT1   170000 perm   37 sec   (4633 perm/sec)   p_kst 5.882353e-06   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
GGT1   180000 perm   39 sec   (4559 perm/sec)   p_kst 5.555556e-06   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
GGT1   190000 perm   42 sec   (4487 perm/sec)   p_kst 5.263158e-06   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 2.263190e+00	ci left: 1.211049e-06	ci right 3.612297e-05	k: 2	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
GGT1   200000 perm   45 sec   (4420 perm/sec)   p_kst 5.000000e-06   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 2.263192e+00	ci left: 1.153380e-06	ci right 3.440285e-05	k: 2	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
GGT1   210000 perm   48 sec   (4358 perm/sec)   p_kst 4.761905e-06   p_cons 9.523810e-06   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 2.263192e+00	ci left: 1.100953e-06	ci right 3.283910e-05	k: 2	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
GGT1   220000 perm   51 sec   (4293 perm/sec)   p_kst 4.545455e-06   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 2.263193e+00	ci left: 1.053086e-06	ci right 3.141133e-05	k: 2	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
GGT1   230000 perm   54 sec   (4234 perm/sec)   p_kst 4.347826e-06   p_cons 8.695652e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 1.959980e+00	ci left: 2.577808e-06	ci right 3.652987e-05	k: 3	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
GGT1   240000 perm   58 sec   (4172 perm/sec)   p_kst 4.166667e-06   p_cons 1.250000e-05   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 1.959980e+00	ci left: 2.474695e-06	ci right 3.506869e-05	k: 3	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
GGT1   250000 perm   61 sec   (4111 perm/sec)   p_kst 4.000000e-06   p_cons 1.200000e-05   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 1.959981e+00	ci left: 2.379514e-06	ci right 3.371991e-05	k: 3	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
GGT1   260000 perm   64 sec   (4054 perm/sec)   p_kst 3.846154e-06   p_cons 1.153846e-05   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 1.959982e+00	ci left: 2.291384e-06	ci right 3.247103e-05	k: 3	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
GGT1   270000 perm   68 sec   (3996 perm/sec)   p_kst 3.703704e-06   p_cons 1.111111e-05   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 1.959983e+00	ci left: 2.209549e-06	ci right 3.131137e-05	k: 3	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
GGT1   280000 perm   71 sec   (3940 perm/sec)   p_kst 3.571429e-06   p_cons 1.071429e-05   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 1.959983e+00	ci left: 2.133357e-06	ci right 3.023168e-05	k: 3	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
GGT1   290000 perm   75 sec   (3886 perm/sec)   p_kst 3.448276e-06   p_cons 1.034483e-05   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 1.959984e+00	ci left: 2.062245e-06	ci right 2.922396e-05	k: 3	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
GGT1   300000 perm   78 sec   (3836 perm/sec)   p_kst 3.333333e-06   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 1.959984e+00	ci left: 1.995721e-06	ci right 2.828126e-05	k: 3	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
GGT1   310000 perm   82 sec   (3784 perm/sec)   p_kst 3.225806e-06   p_cons 9.677419e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 1.959985e+00	ci left: 1.933355e-06	ci right 2.739748e-05	k: 3	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
GGT1   320000 perm   86 sec   (3724 perm/sec)   p_kst 3.125000e-06   p_cons 9.375000e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 1.959985e+00	ci left: 1.874768e-06	ci right 2.656726e-05	k: 3	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
GGT1   330000 perm   90 sec   (3673 perm/sec)   p_kst 3.030303e-06   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 1.959986e+00	ci left: 1.819628e-06	ci right 2.578588e-05	k: 3	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
GGT1   340000 perm   94 sec   (3628 perm/sec)   p_kst 2.941176e-06   p_cons 8.823529e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 1.959986e+00	ci left: 1.767638e-06	ci right 2.504915e-05	k: 3	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
GGT1   350000 perm   98 sec   (3584 perm/sec)   p_kst 2.857143e-06   p_cons 8.571429e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 1.959986e+00	ci left: 1.718537e-06	ci right 2.435334e-05	k: 3	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
GGT1   360000 perm   102 sec   (3539 perm/sec)   p_kst 2.777778e-06   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 1.959987e+00	ci left: 1.672090e-06	ci right 2.369515e-05	k: 3	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
GGT1   370000 perm   106 sec   (3496 perm/sec)   p_kst 2.702703e-06   p_cons 8.108108e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 1.959987e+00	ci left: 1.628087e-06	ci right 2.307160e-05	k: 3	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
GGT1   380000 perm   110 sec   (3453 perm/sec)   p_kst 2.631579e-06   p_cons 7.894737e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 1.959987e+00	ci left: 1.586342e-06	ci right 2.248002e-05	k: 3	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
GGT1   390000 perm   114 sec   (3414 perm/sec)   p_kst 2.564103e-06   p_cons 7.692308e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 1.959988e+00	ci left: 1.546683e-06	ci right 2.191802e-05	k: 3	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
GGT1   400000 perm   119 sec   (3373 perm/sec)   p_kst 2.500000e-06   p_cons 7.500000e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 1.959988e+00	ci left: 1.508959e-06	ci right 2.138344e-05	k: 3	n:410000
KS ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
GGT1   410000 perm   123 sec   (3337 perm/sec)   p_kst 2.439024e-06   p_cons 7.317073e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 1.959988e+00	ci left: 1.473031e-06	ci right 2.087432e-05	k: 3	n:420000
KS ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
GGT1   420000 perm   127 sec   (3300 perm/sec)   p_kst 2.380952e-06   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 1.753065e+00	ci left: 2.534576e-06	ci right 2.381748e-05	k: 4	n:430000
KS ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
GGT1   430000 perm   132 sec   (3262 perm/sec)   p_kst 2.325581e-06   p_cons 9.302326e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 1.753065e+00	ci left: 2.476972e-06	ci right 2.327617e-05	k: 4	n:440000
KS ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
GGT1   440000 perm   136 sec   (3225 perm/sec)   p_kst 2.272727e-06   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 1.753066e+00	ci left: 2.421928e-06	ci right 2.275893e-05	k: 4	n:450000
KS ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
GGT1   450000 perm   141 sec   (3188 perm/sec)   p_kst 2.222222e-06   p_cons 8.888889e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 1.753066e+00	ci left: 2.369277e-06	ci right 2.226417e-05	k: 4	n:460000
KS ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
GGT1   460000 perm   146 sec   (3152 perm/sec)   p_kst 2.173913e-06   p_cons 8.695652e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 1.753066e+00	ci left: 2.318867e-06	ci right 2.179047e-05	k: 4	n:470000
KS ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
GGT1   470000 perm   151 sec   (3115 perm/sec)   p_kst 2.127660e-06   p_cons 8.510638e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 1.600322e+00	ci left: 3.382272e-06	ci right 2.430886e-05	k: 5	n:480000
KS ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
GGT1   480000 perm   156 sec   (3081 perm/sec)   p_kst 2.083333e-06   p_cons 1.041667e-05   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 1.600322e+00	ci left: 3.313246e-06	ci right 2.381276e-05	k: 5	n:490000
KS ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
GGT1   490000 perm   161 sec   (3047 perm/sec)   p_kst 2.040816e-06   p_cons 1.020408e-05   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 1.600322e+00	ci left: 3.246980e-06	ci right 2.333651e-05	k: 5	n:500000
KS ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
GGT1   500000 perm   166 sec   (3010 perm/sec)   p_kst 2.000000e-06   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 1.600322e+00	ci left: 3.183314e-06	ci right 2.287893e-05	k: 5	n:510000
KS ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
GGT1   510000 perm   171 sec   (2976 perm/sec)   p_kst 1.960784e-06   p_cons 9.803922e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 1.600323e+00	ci left: 3.122096e-06	ci right 2.243896e-05	k: 5	n:520000
KS ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
GGT1   520000 perm   177 sec   (2946 perm/sec)   p_kst 1.923077e-06   p_cons 9.615385e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 1.600323e+00	ci left: 3.063189e-06	ci right 2.201558e-05	k: 5	n:530000
KS ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
GGT1   530000 perm   182 sec   (2916 perm/sec)   p_kst 1.886792e-06   p_cons 9.433962e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 1.600323e+00	ci left: 3.006463e-06	ci right 2.160789e-05	k: 5	n:540000
KS ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
GGT1   540000 perm   187 sec   (2884 perm/sec)   p_kst 1.851852e-06   p_cons 9.259259e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 1.600323e+00	ci left: 2.951800e-06	ci right 2.121502e-05	k: 5	n:550000
KS ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
GGT1   550000 perm   193 sec   (2855 perm/sec)   p_kst 1.818182e-06   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 1.600323e+00	ci left: 2.899089e-06	ci right 2.083618e-05	k: 5	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
GGT1   560000 perm   198 sec   (2827 perm/sec)   p_kst 1.785714e-06   p_cons 8.928571e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 1.600323e+00	ci left: 2.848228e-06	ci right 2.047064e-05	k: 5	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
GGT1   570000 perm   204 sec   (2797 perm/sec)   p_kst 1.754386e-06   p_cons 8.771930e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 1.481611e+00	ci left: 3.796379e-06	ci right 2.251620e-05	k: 6	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
GGT1   580000 perm   209 sec   (2769 perm/sec)   p_kst 1.724138e-06   p_cons 1.034483e-05   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 1.481611e+00	ci left: 3.732033e-06	ci right 2.213457e-05	k: 6	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
GGT1   590000 perm   215 sec   (2744 perm/sec)   p_kst 1.694915e-06   p_cons 1.016949e-05   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 1.481611e+00	ci left: 3.669832e-06	ci right 2.176566e-05	k: 6	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
GGT1   600000 perm   221 sec   (2719 perm/sec)   p_kst 1.666667e-06   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 1.481611e+00	ci left: 3.609671e-06	ci right 2.140885e-05	k: 6	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
GGT1   610000 perm   226 sec   (2694 perm/sec)   p_kst 1.639344e-06   p_cons 9.836066e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 1.385919e+00	ci left: 4.539307e-06	ci right 2.326224e-05	k: 7	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
GGT1   620000 perm   233 sec   (2666 perm/sec)   p_kst 1.612903e-06   p_cons 1.129032e-05   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 1.385919e+00	ci left: 4.467254e-06	ci right 2.289300e-05	k: 7	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
GGT1   630000 perm   239 sec   (2639 perm/sec)   p_kst 1.587302e-06   p_cons 1.111111e-05   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 1.385920e+00	ci left: 4.397453e-06	ci right 2.253530e-05	k: 7	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
GGT1   640000 perm   245 sec   (2615 perm/sec)   p_kst 1.562500e-06   p_cons 1.093750e-05   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 1.385920e+00	ci left: 4.329800e-06	ci right 2.218860e-05	k: 7	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
GGT1   650000 perm   251 sec   (2592 perm/sec)   p_kst 1.538462e-06   p_cons 1.076923e-05   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 1.385920e+00	ci left: 4.264197e-06	ci right 2.185242e-05	k: 7	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
GGT1   660000 perm   257 sec   (2570 perm/sec)   p_kst 1.515152e-06   p_cons 1.060606e-05   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 1.385920e+00	ci left: 4.200552e-06	ci right 2.152626e-05	k: 7	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
GGT1   670000 perm   263 sec   (2546 perm/sec)   p_kst 1.492537e-06   p_cons 1.044776e-05   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 1.385920e+00	ci left: 4.138779e-06	ci right 2.120970e-05	k: 7	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
GGT1   680000 perm   270 sec   (2522 perm/sec)   p_kst 1.470588e-06   p_cons 1.029412e-05   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 1.385920e+00	ci left: 4.078796e-06	ci right 2.090232e-05	k: 7	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
GGT1   690000 perm   276 sec   (2501 perm/sec)   p_kst 1.449275e-06   p_cons 1.014493e-05   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 1.385920e+00	ci left: 4.020528e-06	ci right 2.060371e-05	k: 7	n:700000
KS ci ratio: 2.263207e+00	ci left: 3.460134e-07	ci right 1.032094e-05	k: 2	n:700000
GGT1   700000 perm   282 sec   (2480 perm/sec)   p_kst 2.857143e-06   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 1.385921e+00	ci left: 3.963901e-06	ci right 2.031352e-05	k: 7	n:710000
KS ci ratio: 2.263207e+00	ci left: 3.411400e-07	ci right 1.017558e-05	k: 2	n:710000
GGT1   710000 perm   289 sec   (2458 perm/sec)   p_kst 2.816901e-06   p_cons 9.859155e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 1.385921e+00	ci left: 3.908846e-06	ci right 2.003139e-05	k: 7	n:720000
KS ci ratio: 2.263207e+00	ci left: 3.364020e-07	ci right 1.003425e-05	k: 2	n:720000
GGT1   720000 perm   295 sec   (2437 perm/sec)   p_kst 2.777778e-06   p_cons 9.722222e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 1.385921e+00	ci left: 3.855300e-06	ci right 1.975699e-05	k: 7	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
GGT1   730000 perm   302 sec   (2417 perm/sec)   p_kst 1.369863e-06   p_cons 9.589041e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 1.385921e+00	ci left: 3.803201e-06	ci right 1.949000e-05	k: 7	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
GGT1   740000 perm   309 sec   (2397 perm/sec)   p_kst 1.351351e-06   p_cons 9.459459e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 1.385921e+00	ci left: 3.752492e-06	ci right 1.923014e-05	k: 7	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
GGT1   750000 perm   315 sec   (2378 perm/sec)   p_kst 1.333333e-06   p_cons 9.333333e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 1.385921e+00	ci left: 3.703117e-06	ci right 1.897711e-05	k: 7	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
GGT1   760000 perm   322 sec   (2360 perm/sec)   p_kst 1.315789e-06   p_cons 9.210526e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 1.385921e+00	ci left: 3.655025e-06	ci right 1.873066e-05	k: 7	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
GGT1   770000 perm   329 sec   (2341 perm/sec)   p_kst 1.298701e-06   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 1.385921e+00	ci left: 3.608165e-06	ci right 1.849052e-05	k: 7	n:780000
KS ci ratio: 1.959994e+00	ci left: 7.931701e-07	ci right 1.124005e-05	k: 3	n:780000
GGT1   780000 perm   336 sec   (2322 perm/sec)   p_kst 3.846154e-06   p_cons 8.974359e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 1.385921e+00	ci left: 3.562492e-06	ci right 1.825647e-05	k: 7	n:790000
KS ci ratio: 1.959994e+00	ci left: 7.831300e-07	ci right 1.109777e-05	k: 3	n:790000
GGT1   790000 perm   343 sec   (2304 perm/sec)   p_kst 3.797468e-06   p_cons 8.860759e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 1.385921e+00	ci left: 3.517961e-06	ci right 1.802826e-05	k: 7	n:800000
KS ci ratio: 1.959994e+00	ci left: 7.733408e-07	ci right 1.095905e-05	k: 3	n:800000
GGT1   800000 perm   350 sec   (2286 perm/sec)   p_kst 3.750000e-06   p_cons 8.750000e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 1.306659e+00	ci left: 4.264000e-06	ci right 1.946063e-05	k: 8	n:810000
KS ci ratio: 1.959994e+00	ci left: 7.637934e-07	ci right 1.082376e-05	k: 3	n:810000
GGT1   810000 perm   357 sec   (2268 perm/sec)   p_kst 3.703704e-06   p_cons 9.876543e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 1.306659e+00	ci left: 4.212000e-06	ci right 1.922331e-05	k: 8	n:820000
KS ci ratio: 1.959994e+00	ci left: 7.544788e-07	ci right 1.069176e-05	k: 3	n:820000
GGT1   820000 perm   364 sec   (2250 perm/sec)   p_kst 3.658537e-06   p_cons 9.756098e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 1.306659e+00	ci left: 4.161252e-06	ci right 1.899171e-05	k: 8	n:830000
KS ci ratio: 1.959994e+00	ci left: 7.453887e-07	ci right 1.056294e-05	k: 3	n:830000
GGT1   830000 perm   372 sec   (2232 perm/sec)   p_kst 3.614458e-06   p_cons 9.638554e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 1.306659e+00	ci left: 4.111714e-06	ci right 1.876561e-05	k: 8	n:840000
KS ci ratio: 1.959994e+00	ci left: 7.365150e-07	ci right 1.043719e-05	k: 3	n:840000
GGT1   840000 perm   379 sec   (2216 perm/sec)   p_kst 3.571429e-06   p_cons 9.523810e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 1.306659e+00	ci left: 4.063340e-06	ci right 1.854484e-05	k: 8	n:850000
KS ci ratio: 1.959994e+00	ci left: 7.278501e-07	ci right 1.031440e-05	k: 3	n:850000
GGT1   850000 perm   387 sec   (2199 perm/sec)   p_kst 3.529412e-06   p_cons 9.411765e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 1.306659e+00	ci left: 4.016092e-06	ci right 1.832921e-05	k: 8	n:860000
KS ci ratio: 1.959994e+00	ci left: 7.193868e-07	ci right 1.019447e-05	k: 3	n:860000
GGT1   860000 perm   394 sec   (2183 perm/sec)   p_kst 3.488372e-06   p_cons 9.302326e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 1.306659e+00	ci left: 3.969930e-06	ci right 1.811853e-05	k: 8	n:870000
KS ci ratio: 1.959994e+00	ci left: 7.111179e-07	ci right 1.007729e-05	k: 3	n:870000
GGT1   870000 perm   402 sec   (2166 perm/sec)   p_kst 3.448276e-06   p_cons 9.195402e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 1.306659e+00	ci left: 3.924817e-06	ci right 1.791264e-05	k: 8	n:880000
KS ci ratio: 1.959994e+00	ci left: 7.030371e-07	ci right 9.962778e-06	k: 3	n:880000
GGT1   880000 perm   409 sec   (2150 perm/sec)   p_kst 3.409091e-06   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 1.306659e+00	ci left: 3.880718e-06	ci right 1.771137e-05	k: 8	n:890000
KS ci ratio: 1.959994e+00	ci left: 6.951378e-07	ci right 9.850837e-06	k: 3	n:890000
GGT1   890000 perm   417 sec   (2135 perm/sec)   p_kst 3.370787e-06   p_cons 8.988764e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 1.306659e+00	ci left: 3.837599e-06	ci right 1.751458e-05	k: 8	n:900000
KS ci ratio: 1.959995e+00	ci left: 6.874140e-07	ci right 9.741383e-06	k: 3	n:900000
GGT1   900000 perm   425 sec   (2120 perm/sec)   p_kst 3.333333e-06   p_cons 8.888889e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 1.306659e+00	ci left: 3.795427e-06	ci right 1.732211e-05	k: 8	n:910000
KS ci ratio: 1.959995e+00	ci left: 6.798600e-07	ci right 9.634335e-06	k: 3	n:910000
GGT1   910000 perm   432 sec   (2104 perm/sec)   p_kst 3.296703e-06   p_cons 8.791209e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 1.306660e+00	ci left: 3.754173e-06	ci right 1.713383e-05	k: 8	n:920000
KS ci ratio: 1.959995e+00	ci left: 6.724702e-07	ci right 9.529615e-06	k: 3	n:920000
GGT1   920000 perm   441 sec   (2088 perm/sec)   p_kst 3.260870e-06   p_cons 8.695652e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 1.306660e+00	ci left: 3.713805e-06	ci right 1.694960e-05	k: 8	n:930000
KS ci ratio: 1.959995e+00	ci left: 6.652393e-07	ci right 9.427146e-06	k: 3	n:930000
GGT1   930000 perm   449 sec   (2073 perm/sec)   p_kst 3.225806e-06   p_cons 8.602151e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 1.306660e+00	ci left: 3.674296e-06	ci right 1.676928e-05	k: 8	n:940000
KS ci ratio: 1.959995e+00	ci left: 6.581623e-07	ci right 9.326858e-06	k: 3	n:940000
GGT1   940000 perm   457 sec   (2058 perm/sec)   p_kst 3.191489e-06   p_cons 8.510638e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 1.306660e+00	ci left: 3.635620e-06	ci right 1.659276e-05	k: 8	n:950000
KS ci ratio: 1.959995e+00	ci left: 6.512343e-07	ci right 9.228680e-06	k: 3	n:950000
GGT1   950000 perm   465 sec   (2042 perm/sec)   p_kst 3.157895e-06   p_cons 8.421053e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 1.306660e+00	ci left: 3.597748e-06	ci right 1.641992e-05	k: 8	n:960000
KS ci ratio: 1.959995e+00	ci left: 6.444506e-07	ci right 9.132549e-06	k: 3	n:960000
GGT1   960000 perm   473 sec   (2028 perm/sec)   p_kst 3.125000e-06   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 1.306660e+00	ci left: 3.560658e-06	ci right 1.625065e-05	k: 8	n:970000
KS ci ratio: 1.959995e+00	ci left: 6.378068e-07	ci right 9.038399e-06	k: 3	n:970000
GGT1   970000 perm   482 sec   (2013 perm/sec)   p_kst 3.092784e-06   p_cons 8.247423e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 1.306660e+00	ci left: 3.524325e-06	ci right 1.608482e-05	k: 8	n:980000
KS ci ratio: 1.959995e+00	ci left: 6.312985e-07	ci right 8.946171e-06	k: 3	n:980000
GGT1   980000 perm   490 sec   (2000 perm/sec)   p_kst 3.061224e-06   p_cons 8.163265e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 1.306660e+00	ci left: 3.488726e-06	ci right 1.592235e-05	k: 8	n:990000
KS ci ratio: 1.959995e+00	ci left: 6.249218e-07	ci right 8.855806e-06	k: 3	n:990000
GGT1   990000 perm   499 sec   (1986 perm/sec)   p_kst 3.030303e-06   p_cons 8.080808e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 1.306660e+00	ci left: 3.453838e-06	ci right 1.576313e-05	k: 8	n:1000000
KS ci ratio: 1.959995e+00	ci left: 6.186726e-07	ci right 8.767248e-06	k: 3	n:1000000
GGT1   1000000 perm   507 sec   (1972 perm/sec)   p_kst 3.000000e-06   p_cons 8.000000e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 1.306660e+00	ci left: 3.419642e-06	ci right 1.560706e-05	k: 8	n:1010000
KS ci ratio: 1.959995e+00	ci left: 6.125471e-07	ci right 8.680444e-06	k: 3	n:1010000
GGT1   1010000 perm   516 sec   (1958 perm/sec)   p_kst 2.970297e-06   p_cons 7.920792e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 1.306660e+00	ci left: 3.386116e-06	ci right 1.545405e-05	k: 8	n:1020000
KS ci ratio: 1.959995e+00	ci left: 6.065417e-07	ci right 8.595341e-06	k: 3	n:1020000
GGT1   1020000 perm   524 sec   (1945 perm/sec)   p_kst 2.941176e-06   p_cons 7.843137e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 1.306660e+00	ci left: 3.353241e-06	ci right 1.530401e-05	k: 8	n:1030000
KS ci ratio: 1.959995e+00	ci left: 6.006529e-07	ci right 8.511892e-06	k: 3	n:1030000
GGT1   1030000 perm   533 sec   (1933 perm/sec)   p_kst 2.912621e-06   p_cons 7.766990e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 1.306660e+00	ci left: 3.320998e-06	ci right 1.515686e-05	k: 8	n:1040000
KS ci ratio: 1.959995e+00	ci left: 5.948774e-07	ci right 8.430047e-06	k: 3	n:1040000
GGT1   1040000 perm   542 sec   (1919 perm/sec)   p_kst 2.884615e-06   p_cons 7.692308e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 1.306660e+00	ci left: 3.289370e-06	ci right 1.501251e-05	k: 8	n:1050000
KS ci ratio: 1.959995e+00	ci left: 5.892119e-07	ci right 8.349761e-06	k: 3	n:1050000
GGT1   1050000 perm   551 sec   (1906 perm/sec)   p_kst 2.857143e-06   p_cons 7.619048e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 1.306661e+00	ci left: 3.258338e-06	ci right 1.487088e-05	k: 8	n:1060000
KS ci ratio: 1.959995e+00	ci left: 5.836533e-07	ci right 8.270990e-06	k: 3	n:1060000
GGT1   1060000 perm   560 sec   (1894 perm/sec)   p_kst 2.830189e-06   p_cons 7.547170e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 1.306661e+00	ci left: 3.227886e-06	ci right 1.473190e-05	k: 8	n:1070000
KS ci ratio: 1.959995e+00	ci left: 5.781986e-07	ci right 8.193691e-06	k: 3	n:1070000
GGT1   1070000 perm   569 sec   (1882 perm/sec)   p_kst 2.803738e-06   p_cons 7.476636e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 1.306661e+00	ci left: 3.197998e-06	ci right 1.459549e-05	k: 8	n:1080000
KS ci ratio: 1.959995e+00	ci left: 5.728449e-07	ci right 8.117824e-06	k: 3	n:1080000
GGT1   1080000 perm   578 sec   (1870 perm/sec)   p_kst 2.777778e-06   p_cons 7.407407e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 1.306661e+00	ci left: 3.168659e-06	ci right 1.446159e-05	k: 8	n:1090000
KS ci ratio: 1.959996e+00	ci left: 5.675895e-07	ci right 8.043349e-06	k: 3	n:1090000
GGT1   1090000 perm   587 sec   (1858 perm/sec)   p_kst 2.752294e-06   p_cons 7.339450e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 1.306661e+00	ci left: 3.139852e-06	ci right 1.433012e-05	k: 8	n:1100000
KS ci ratio: 1.959996e+00	ci left: 5.624296e-07	ci right 7.970227e-06	k: 3	n:1100000
GGT1   1100000 perm   596 sec   (1847 perm/sec)   p_kst 2.727273e-06   p_cons 7.272727e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 1.306661e+00	ci left: 3.111565e-06	ci right 1.420102e-05	k: 8	n:1110000
KS ci ratio: 1.959996e+00	ci left: 5.573626e-07	ci right 7.898424e-06	k: 3	n:1110000
GGT1   1110000 perm   605 sec   (1835 perm/sec)   p_kst 2.702703e-06   p_cons 7.207207e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 1.306661e+00	ci left: 3.083784e-06	ci right 1.407423e-05	k: 8	n:1120000
KS ci ratio: 1.959996e+00	ci left: 5.523862e-07	ci right 7.827902e-06	k: 3	n:1120000
GGT1   1120000 perm   614 sec   (1824 perm/sec)   p_kst 2.678571e-06   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 1.306661e+00	ci left: 3.056493e-06	ci right 1.394968e-05	k: 8	n:1130000
KS ci ratio: 1.959996e+00	ci left: 5.474978e-07	ci right 7.758629e-06	k: 3	n:1130000
GGT1   1130000 perm   624 sec   (1812 perm/sec)   p_kst 2.654867e-06   p_cons 7.079646e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 1.306661e+00	ci left: 3.029682e-06	ci right 1.382731e-05	k: 8	n:1140000
KS ci ratio: 1.959996e+00	ci left: 5.426952e-07	ci right 7.690571e-06	k: 3	n:1140000
GGT1   1140000 perm   633 sec   (1801 perm/sec)   p_kst 2.631579e-06   p_cons 7.017544e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 1.306661e+00	ci left: 3.003337e-06	ci right 1.370707e-05	k: 8	n:1150000
KS ci ratio: 1.959996e+00	ci left: 5.379761e-07	ci right 7.623697e-06	k: 3	n:1150000
GGT1   1150000 perm   643 sec   (1789 perm/sec)   p_kst 2.608696e-06   p_cons 6.956522e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 1.306661e+00	ci left: 2.977446e-06	ci right 1.358891e-05	k: 8	n:1160000
KS ci ratio: 1.959996e+00	ci left: 5.333384e-07	ci right 7.557975e-06	k: 3	n:1160000
GGT1   1160000 perm   652 sec   (1778 perm/sec)   p_kst 2.586207e-06   p_cons 6.896552e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 1.306661e+00	ci left: 2.951998e-06	ci right 1.347277e-05	k: 8	n:1170000
KS ci ratio: 1.959996e+00	ci left: 5.287799e-07	ci right 7.493377e-06	k: 3	n:1170000
GGT1   1170000 perm   662 sec   (1767 perm/sec)   p_kst 2.564103e-06   p_cons 6.837607e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 1.306661e+00	ci left: 2.926981e-06	ci right 1.335859e-05	k: 8	n:1180000
KS ci ratio: 1.959996e+00	ci left: 5.242987e-07	ci right 7.429874e-06	k: 3	n:1180000
GGT1   1180000 perm   672 sec   (1756 perm/sec)   p_kst 2.542373e-06   p_cons 6.779661e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 1.306661e+00	ci left: 2.902384e-06	ci right 1.324633e-05	k: 8	n:1190000
KS ci ratio: 1.959996e+00	ci left: 5.198928e-07	ci right 7.367439e-06	k: 3	n:1190000
GGT1   1190000 perm   682 sec   (1745 perm/sec)   p_kst 2.521008e-06   p_cons 6.722689e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 1.306661e+00	ci left: 2.878198e-06	ci right 1.313595e-05	k: 8	n:1200000
KS ci ratio: 1.959996e+00	ci left: 5.155604e-07	ci right 7.306043e-06	k: 3	n:1200000
GGT1   1200000 perm   692 sec   (1735 perm/sec)   p_kst 2.500000e-06   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 1.306661e+00	ci left: 2.854411e-06	ci right 1.302739e-05	k: 8	n:1210000
KS ci ratio: 1.959996e+00	ci left: 5.112996e-07	ci right 7.245663e-06	k: 3	n:1210000
GGT1   1210000 perm   702 sec   (1725 perm/sec)   p_kst 2.479339e-06   p_cons 6.611570e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 1.306661e+00	ci left: 2.831014e-06	ci right 1.292061e-05	k: 8	n:1220000
KS ci ratio: 1.959996e+00	ci left: 5.071086e-07	ci right 7.186272e-06	k: 3	n:1220000
GGT1   1220000 perm   711 sec   (1715 perm/sec)   p_kst 2.459016e-06   p_cons 6.557377e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 1.306661e+00	ci left: 2.807998e-06	ci right 1.281556e-05	k: 8	n:1230000
KS ci ratio: 1.753073e+00	ci left: 8.860701e-07	ci right 8.326474e-06	k: 4	n:1230000
GGT1   1230000 perm   721 sec   (1705 perm/sec)   p_kst 3.252033e-06   p_cons 6.504065e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 1.306661e+00	ci left: 2.785353e-06	ci right 1.271221e-05	k: 8	n:1240000
KS ci ratio: 1.753073e+00	ci left: 8.789244e-07	ci right 8.259325e-06	k: 4	n:1240000
GGT1   1240000 perm   731 sec   (1696 perm/sec)   p_kst 3.225806e-06   p_cons 6.451613e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 1.306661e+00	ci left: 2.763070e-06	ci right 1.261051e-05	k: 8	n:1250000
KS ci ratio: 1.753073e+00	ci left: 8.718930e-07	ci right 8.193250e-06	k: 4	n:1250000
GGT1   1250000 perm   741 sec   (1686 perm/sec)   p_kst 3.200000e-06   p_cons 6.400000e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 1.306661e+00	ci left: 2.741141e-06	ci right 1.251043e-05	k: 8	n:1260000
KS ci ratio: 1.753073e+00	ci left: 8.649732e-07	ci right 8.128225e-06	k: 4	n:1260000
GGT1   1260000 perm   752 sec   (1677 perm/sec)   p_kst 3.174603e-06   p_cons 6.349206e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 1.306662e+00	ci left: 2.719557e-06	ci right 1.241192e-05	k: 8	n:1270000
KS ci ratio: 1.753073e+00	ci left: 8.581624e-07	ci right 8.064223e-06	k: 4	n:1270000
GGT1   1270000 perm   762 sec   (1667 perm/sec)   p_kst 3.149606e-06   p_cons 6.299213e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 1.306662e+00	ci left: 2.698310e-06	ci right 1.231495e-05	k: 8	n:1280000
KS ci ratio: 1.753073e+00	ci left: 8.514580e-07	ci right 8.001222e-06	k: 4	n:1280000
GGT1   1280000 perm   772 sec   (1657 perm/sec)   p_kst 3.125000e-06   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 1.306662e+00	ci left: 2.677393e-06	ci right 1.221949e-05	k: 8	n:1290000
KS ci ratio: 1.753073e+00	ci left: 8.448575e-07	ci right 7.939197e-06	k: 4	n:1290000
GGT1   1290000 perm   783 sec   (1648 perm/sec)   p_kst 3.100775e-06   p_cons 6.201550e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 1.239608e+00	ci left: 3.165676e-06	ci right 1.314212e-05	k: 9	n:1300000
KS ci ratio: 1.753073e+00	ci left: 8.383586e-07	ci right 7.878126e-06	k: 4	n:1300000
GGT1   1300000 perm   793 sec   (1638 perm/sec)   p_kst 3.076923e-06   p_cons 6.923077e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 1.239608e+00	ci left: 3.141511e-06	ci right 1.304179e-05	k: 9	n:1310000
KS ci ratio: 1.753073e+00	ci left: 8.319589e-07	ci right 7.817988e-06	k: 4	n:1310000
GGT1   1310000 perm   804 sec   (1629 perm/sec)   p_kst 3.053435e-06   p_cons 6.870229e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 1.239608e+00	ci left: 3.117711e-06	ci right 1.294299e-05	k: 9	n:1320000
KS ci ratio: 1.753073e+00	ci left: 8.256562e-07	ci right 7.758761e-06	k: 4	n:1320000
GGT1   1320000 perm   815 sec   (1620 perm/sec)   p_kst 3.030303e-06   p_cons 6.818182e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 1.239608e+00	ci left: 3.094270e-06	ci right 1.284568e-05	k: 9	n:1330000
KS ci ratio: 1.753073e+00	ci left: 8.194482e-07	ci right 7.700425e-06	k: 4	n:1330000
GGT1   1330000 perm   825 sec   (1611 perm/sec)   p_kst 3.007519e-06   p_cons 6.766917e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 1.239608e+00	ci left: 3.071178e-06	ci right 1.274981e-05	k: 9	n:1340000
KS ci ratio: 1.753073e+00	ci left: 8.133329e-07	ci right 7.642959e-06	k: 4	n:1340000
GGT1   1340000 perm   836 sec   (1602 perm/sec)   p_kst 2.985075e-06   p_cons 6.716418e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 1.239608e+00	ci left: 3.048429e-06	ci right 1.265537e-05	k: 9	n:1350000
KS ci ratio: 1.753073e+00	ci left: 8.073083e-07	ci right 7.586344e-06	k: 4	n:1350000
GGT1   1350000 perm   847 sec   (1594 perm/sec)   p_kst 2.962963e-06   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 1.239608e+00	ci left: 3.026014e-06	ci right 1.256232e-05	k: 9	n:1360000
KS ci ratio: 1.753073e+00	ci left: 8.013722e-07	ci right 7.530563e-06	k: 4	n:1360000
GGT1   1360000 perm   858 sec   (1584 perm/sec)   p_kst 2.941176e-06   p_cons 6.617647e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 1.239608e+00	ci left: 3.003926e-06	ci right 1.247062e-05	k: 9	n:1370000
KS ci ratio: 1.753073e+00	ci left: 7.955227e-07	ci right 7.475595e-06	k: 4	n:1370000
GGT1   1370000 perm   869 sec   (1576 perm/sec)   p_kst 2.919708e-06   p_cons 6.569343e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 1.239608e+00	ci left: 2.982159e-06	ci right 1.238026e-05	k: 9	n:1380000
KS ci ratio: 1.753073e+00	ci left: 7.897581e-07	ci right 7.421424e-06	k: 4	n:1380000
GGT1   1380000 perm   880 sec   (1568 perm/sec)   p_kst 2.898551e-06   p_cons 6.521739e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 1.239608e+00	ci left: 2.960704e-06	ci right 1.229119e-05	k: 9	n:1390000
KS ci ratio: 1.753074e+00	ci left: 7.840763e-07	ci right 7.368033e-06	k: 4	n:1390000
GGT1   1390000 perm   891 sec   (1559 perm/sec)   p_kst 2.877698e-06   p_cons 6.474820e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 1.239608e+00	ci left: 2.939556e-06	ci right 1.220340e-05	k: 9	n:1400000
KS ci ratio: 1.753074e+00	ci left: 7.784758e-07	ci right 7.315404e-06	k: 4	n:1400000
GGT1   1400000 perm   903 sec   (1551 perm/sec)   p_kst 2.857143e-06   p_cons 6.428571e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 1.239608e+00	ci left: 2.918708e-06	ci right 1.211685e-05	k: 9	n:1410000
KS ci ratio: 1.753074e+00	ci left: 7.729547e-07	ci right 7.263522e-06	k: 4	n:1410000
GGT1   1410000 perm   914 sec   (1543 perm/sec)   p_kst 2.836879e-06   p_cons 6.382979e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 1.239608e+00	ci left: 2.898154e-06	ci right 1.203152e-05	k: 9	n:1420000
KS ci ratio: 1.753074e+00	ci left: 7.675113e-07	ci right 7.212371e-06	k: 4	n:1420000
GGT1   1420000 perm   925 sec   (1535 perm/sec)   p_kst 2.816901e-06   p_cons 6.338028e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 1.239608e+00	ci left: 2.877887e-06	ci right 1.194738e-05	k: 9	n:1430000
KS ci ratio: 1.753074e+00	ci left: 7.621441e-07	ci right 7.161934e-06	k: 4	n:1430000
GGT1   1430000 perm   936 sec   (1527 perm/sec)   p_kst 2.797203e-06   p_cons 6.293706e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 1.181920e+00	ci left: 3.330136e-06	ci right 1.277104e-05	k: 10	n:1440000
KS ci ratio: 1.753074e+00	ci left: 7.568515e-07	ci right 7.112199e-06	k: 4	n:1440000
GGT1   1440000 perm   948 sec   (1518 perm/sec)   p_kst 2.777778e-06   p_cons 6.944444e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 1.181920e+00	ci left: 3.307169e-06	ci right 1.268297e-05	k: 10	n:1450000
KS ci ratio: 1.753074e+00	ci left: 7.516318e-07	ci right 7.063149e-06	k: 4	n:1450000
GGT1   1450000 perm   960 sec   (1510 perm/sec)   p_kst 2.758621e-06   p_cons 6.896552e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 1.181920e+00	ci left: 3.284518e-06	ci right 1.259610e-05	k: 10	n:1460000
KS ci ratio: 1.753074e+00	ci left: 7.464836e-07	ci right 7.014772e-06	k: 4	n:1460000
GGT1   1460000 perm   972 sec   (1502 perm/sec)   p_kst 2.739726e-06   p_cons 6.849315e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 1.181920e+00	ci left: 3.262174e-06	ci right 1.251041e-05	k: 10	n:1470000
KS ci ratio: 1.753074e+00	ci left: 7.414055e-07	ci right 6.967052e-06	k: 4	n:1470000
GGT1   1470000 perm   984 sec   (1495 perm/sec)   p_kst 2.721088e-06   p_cons 6.802721e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 1.131602e+00	ci left: 3.710249e-06	ci right 1.329864e-05	k: 11	n:1480000
KS ci ratio: 1.753074e+00	ci left: 7.363960e-07	ci right 6.919978e-06	k: 4	n:1480000
GGT1   1480000 perm   995 sec   (1487 perm/sec)   p_kst 2.702703e-06   p_cons 7.432432e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 1.131602e+00	ci left: 3.685348e-06	ci right 1.320938e-05	k: 11	n:1490000
KS ci ratio: 1.753074e+00	ci left: 7.314537e-07	ci right 6.873535e-06	k: 4	n:1490000
GGT1   1490000 perm   1007 sec   (1479 perm/sec)   p_kst 2.684564e-06   p_cons 7.382550e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 1.131602e+00	ci left: 3.660779e-06	ci right 1.312132e-05	k: 11	n:1500000
KS ci ratio: 1.753074e+00	ci left: 7.265774e-07	ci right 6.827712e-06	k: 4	n:1500000
GGT1   1500000 perm   1019 sec   (1472 perm/sec)   p_kst 2.666667e-06   p_cons 7.333333e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 1.131602e+00	ci left: 3.636535e-06	ci right 1.303443e-05	k: 11	n:1510000
KS ci ratio: 1.753074e+00	ci left: 7.217656e-07	ci right 6.782495e-06	k: 4	n:1510000
GGT1   1510000 perm   1031 sec   (1465 perm/sec)   p_kst 2.649007e-06   p_cons 7.284768e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 1.131602e+00	ci left: 3.612611e-06	ci right 1.294867e-05	k: 11	n:1520000
KS ci ratio: 1.753074e+00	ci left: 7.170171e-07	ci right 6.737873e-06	k: 4	n:1520000
GGT1   1520000 perm   1043 sec   (1457 perm/sec)   p_kst 2.631579e-06   p_cons 7.236842e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 1.131602e+00	ci left: 3.588999e-06	ci right 1.286404e-05	k: 11	n:1530000
KS ci ratio: 1.753074e+00	ci left: 7.123308e-07	ci right 6.693835e-06	k: 4	n:1530000
GGT1   1530000 perm   1055 sec   (1450 perm/sec)   p_kst 2.614379e-06   p_cons 7.189542e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 1.131602e+00	ci left: 3.565694e-06	ci right 1.278051e-05	k: 11	n:1540000
KS ci ratio: 1.753074e+00	ci left: 7.077052e-07	ci right 6.650369e-06	k: 4	n:1540000
GGT1   1540000 perm   1068 sec   (1443 perm/sec)   p_kst 2.597403e-06   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 1.131602e+00	ci left: 3.542689e-06	ci right 1.269805e-05	k: 11	n:1550000
KS ci ratio: 1.753074e+00	ci left: 7.031394e-07	ci right 6.607463e-06	k: 4	n:1550000
GGT1   1550000 perm   1080 sec   (1435 perm/sec)   p_kst 2.580645e-06   p_cons 7.096774e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 1.131602e+00	ci left: 3.519980e-06	ci right 1.261666e-05	k: 11	n:1560000
KS ci ratio: 1.753074e+00	ci left: 6.986321e-07	ci right 6.565108e-06	k: 4	n:1560000
GGT1   1560000 perm   1092 sec   (1428 perm/sec)   p_kst 2.564103e-06   p_cons 7.051282e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 1.131602e+00	ci left: 3.497559e-06	ci right 1.253630e-05	k: 11	n:1570000
KS ci ratio: 1.753074e+00	ci left: 6.941822e-07	ci right 6.523292e-06	k: 4	n:1570000
GGT1   1570000 perm   1105 sec   (1421 perm/sec)   p_kst 2.547771e-06   p_cons 7.006369e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 1.131602e+00	ci left: 3.475423e-06	ci right 1.245695e-05	k: 11	n:1580000
KS ci ratio: 1.753074e+00	ci left: 6.897886e-07	ci right 6.482005e-06	k: 4	n:1580000
GGT1   1580000 perm   1117 sec   (1414 perm/sec)   p_kst 2.531646e-06   p_cons 6.962025e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 1.131602e+00	ci left: 3.453565e-06	ci right 1.237861e-05	k: 11	n:1590000
KS ci ratio: 1.753074e+00	ci left: 6.854503e-07	ci right 6.441238e-06	k: 4	n:1590000
GGT1   1590000 perm   1130 sec   (1407 perm/sec)   p_kst 2.515723e-06   p_cons 6.918239e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 1.131602e+00	ci left: 3.431980e-06	ci right 1.230124e-05	k: 11	n:1600000
KS ci ratio: 1.753074e+00	ci left: 6.811663e-07	ci right 6.400980e-06	k: 4	n:1600000
GGT1   1600000 perm   1142 sec   (1401 perm/sec)   p_kst 2.500000e-06   p_cons 6.875000e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 1.131602e+00	ci left: 3.410663e-06	ci right 1.222484e-05	k: 11	n:1610000
KS ci ratio: 1.753074e+00	ci left: 6.769354e-07	ci right 6.361223e-06	k: 4	n:1610000
GGT1   1610000 perm   1155 sec   (1394 perm/sec)   p_kst 2.484472e-06   p_cons 6.832298e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 1.131602e+00	ci left: 3.389610e-06	ci right 1.214937e-05	k: 11	n:1620000
KS ci ratio: 1.753074e+00	ci left: 6.727568e-07	ci right 6.321956e-06	k: 4	n:1620000
GGT1   1620000 perm   1167 sec   (1388 perm/sec)   p_kst 2.469136e-06   p_cons 6.790123e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 1.087208e+00	ci left: 3.804039e-06	ci right 1.285983e-05	k: 12	n:1630000
KS ci ratio: 1.753074e+00	ci left: 6.686295e-07	ci right 6.283171e-06	k: 4	n:1630000
GGT1   1630000 perm   1180 sec   (1381 perm/sec)   p_kst 2.453988e-06   p_cons 7.361963e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 1.087208e+00	ci left: 3.780844e-06	ci right 1.278142e-05	k: 12	n:1640000
KS ci ratio: 1.753074e+00	ci left: 6.645524e-07	ci right 6.244859e-06	k: 4	n:1640000
GGT1   1640000 perm   1193 sec   (1374 perm/sec)   p_kst 2.439024e-06   p_cons 7.317073e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 1.087208e+00	ci left: 3.757930e-06	ci right 1.270396e-05	k: 12	n:1650000
KS ci ratio: 1.753074e+00	ci left: 6.605249e-07	ci right 6.207012e-06	k: 4	n:1650000
GGT1   1650000 perm   1206 sec   (1368 perm/sec)   p_kst 2.424242e-06   p_cons 7.272727e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 1.087208e+00	ci left: 3.735292e-06	ci right 1.262743e-05	k: 12	n:1660000
KS ci ratio: 1.753074e+00	ci left: 6.565458e-07	ci right 6.169620e-06	k: 4	n:1660000
GGT1   1660000 perm   1219 sec   (1361 perm/sec)   p_kst 2.409639e-06   p_cons 7.228916e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 1.087208e+00	ci left: 3.712925e-06	ci right 1.255181e-05	k: 12	n:1670000
KS ci ratio: 1.753074e+00	ci left: 6.526144e-07	ci right 6.132676e-06	k: 4	n:1670000
GGT1   1670000 perm   1232 sec   (1355 perm/sec)   p_kst 2.395210e-06   p_cons 7.185629e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 1.087208e+00	ci left: 3.690824e-06	ci right 1.247710e-05	k: 12	n:1680000
KS ci ratio: 1.600330e+00	ci left: 9.663616e-07	ci right 6.945422e-06	k: 5	n:1680000
GGT1   1680000 perm   1246 sec   (1349 perm/sec)   p_kst 2.976190e-06   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 1.087208e+00	ci left: 3.668985e-06	ci right 1.240327e-05	k: 12	n:1690000
KS ci ratio: 1.600330e+00	ci left: 9.606435e-07	ci right 6.904325e-06	k: 5	n:1690000
GGT1   1690000 perm   1259 sec   (1343 perm/sec)   p_kst 2.958580e-06   p_cons 7.100592e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 1.087208e+00	ci left: 3.647402e-06	ci right 1.233031e-05	k: 12	n:1700000
KS ci ratio: 1.600330e+00	ci left: 9.549927e-07	ci right 6.863711e-06	k: 5	n:1700000
GGT1   1700000 perm   1272 sec   (1337 perm/sec)   p_kst 2.941176e-06   p_cons 7.058824e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 1.087208e+00	ci left: 3.626072e-06	ci right 1.225820e-05	k: 12	n:1710000
KS ci ratio: 1.600330e+00	ci left: 9.494079e-07	ci right 6.823573e-06	k: 5	n:1710000
GGT1   1710000 perm   1285 sec   (1331 perm/sec)   p_kst 2.923977e-06   p_cons 7.017544e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 1.087208e+00	ci left: 3.604991e-06	ci right 1.218694e-05	k: 12	n:1720000
KS ci ratio: 1.600330e+00	ci left: 9.438881e-07	ci right 6.783901e-06	k: 5	n:1720000
GGT1   1720000 perm   1298 sec   (1325 perm/sec)   p_kst 2.906977e-06   p_cons 6.976744e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 1.087208e+00	ci left: 3.584152e-06	ci right 1.211649e-05	k: 12	n:1730000
KS ci ratio: 1.600330e+00	ci left: 9.384321e-07	ci right 6.744688e-06	k: 5	n:1730000
GGT1   1730000 perm   1312 sec   (1319 perm/sec)   p_kst 2.890173e-06   p_cons 6.936416e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 1.047660e+00	ci left: 3.978139e-06	ci right 1.277606e-05	k: 13	n:1740000
KS ci ratio: 1.600330e+00	ci left: 9.330388e-07	ci right 6.705925e-06	k: 5	n:1740000
GGT1   1740000 perm   1325 sec   (1313 perm/sec)   p_kst 2.873563e-06   p_cons 7.471264e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 1.047660e+00	ci left: 3.955407e-06	ci right 1.270305e-05	k: 13	n:1750000
KS ci ratio: 1.600330e+00	ci left: 9.277071e-07	ci right 6.667606e-06	k: 5	n:1750000
GGT1   1750000 perm   1339 sec   (1307 perm/sec)   p_kst 2.857143e-06   p_cons 7.428571e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 1.047660e+00	ci left: 3.932933e-06	ci right 1.263087e-05	k: 13	n:1760000
KS ci ratio: 1.600330e+00	ci left: 9.224361e-07	ci right 6.629722e-06	k: 5	n:1760000
GGT1   1760000 perm   1352 sec   (1302 perm/sec)   p_kst 2.840909e-06   p_cons 7.386364e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 1.047660e+00	ci left: 3.910713e-06	ci right 1.255951e-05	k: 13	n:1770000
KS ci ratio: 1.600330e+00	ci left: 9.172246e-07	ci right 6.592266e-06	k: 5	n:1770000
GGT1   1770000 perm   1366 sec   (1296 perm/sec)   p_kst 2.824859e-06   p_cons 7.344633e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 1.047660e+00	ci left: 3.888743e-06	ci right 1.248895e-05	k: 13	n:1780000
KS ci ratio: 1.600330e+00	ci left: 9.120716e-07	ci right 6.555230e-06	k: 5	n:1780000
GGT1   1780000 perm   1380 sec   (1290 perm/sec)   p_kst 2.808989e-06   p_cons 7.303371e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 1.047660e+00	ci left: 3.867018e-06	ci right 1.241918e-05	k: 13	n:1790000
KS ci ratio: 1.600330e+00	ci left: 9.069762e-07	ci right 6.518609e-06	k: 5	n:1790000
GGT1   1790000 perm   1394 sec   (1284 perm/sec)   p_kst 2.793296e-06   p_cons 7.262570e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 1.047660e+00	ci left: 3.845535e-06	ci right 1.235019e-05	k: 13	n:1800000
KS ci ratio: 1.600330e+00	ci left: 9.019375e-07	ci right 6.482395e-06	k: 5	n:1800000
GGT1   1800000 perm   1407 sec   (1279 perm/sec)   p_kst 2.777778e-06   p_cons 7.222222e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 1.047660e+00	ci left: 3.824289e-06	ci right 1.228196e-05	k: 13	n:1810000
KS ci ratio: 1.600330e+00	ci left: 8.969544e-07	ci right 6.446580e-06	k: 5	n:1810000
GGT1   1810000 perm   1421 sec   (1274 perm/sec)   p_kst 2.762431e-06   p_cons 7.182320e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 1.047660e+00	ci left: 3.803276e-06	ci right 1.221447e-05	k: 13	n:1820000
KS ci ratio: 1.600330e+00	ci left: 8.920261e-07	ci right 6.411160e-06	k: 5	n:1820000
GGT1   1820000 perm   1435 sec   (1268 perm/sec)   p_kst 2.747253e-06   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 1.047660e+00	ci left: 3.782493e-06	ci right 1.214773e-05	k: 13	n:1830000
KS ci ratio: 1.600330e+00	ci left: 8.871516e-07	ci right 6.376126e-06	k: 5	n:1830000
GGT1   1830000 perm   1450 sec   (1262 perm/sec)   p_kst 2.732240e-06   p_cons 7.103825e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 1.047660e+00	ci left: 3.761936e-06	ci right 1.208171e-05	k: 13	n:1840000
KS ci ratio: 1.600330e+00	ci left: 8.823301e-07	ci right 6.341473e-06	k: 5	n:1840000
GGT1   1840000 perm   1465 sec   (1256 perm/sec)   p_kst 2.717391e-06   p_cons 7.065217e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 1.047660e+00	ci left: 3.741601e-06	ci right 1.201640e-05	k: 13	n:1850000
KS ci ratio: 1.600330e+00	ci left: 8.775608e-07	ci right 6.307195e-06	k: 5	n:1850000
GGT1   1850000 perm   1479 sec   (1251 perm/sec)   p_kst 2.702703e-06   p_cons 7.027027e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 1.047660e+00	ci left: 3.721485e-06	ci right 1.195180e-05	k: 13	n:1860000
KS ci ratio: 1.600330e+00	ci left: 8.728427e-07	ci right 6.273286e-06	k: 5	n:1860000
GGT1   1860000 perm   1493 sec   (1246 perm/sec)   p_kst 2.688172e-06   p_cons 6.989247e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 1.047660e+00	ci left: 3.701584e-06	ci right 1.188788e-05	k: 13	n:1870000
KS ci ratio: 1.600330e+00	ci left: 8.681751e-07	ci right 6.239739e-06	k: 5	n:1870000
GGT1   1870000 perm   1508 sec   (1240 perm/sec)   p_kst 2.673797e-06   p_cons 6.951872e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 1.047660e+00	ci left: 3.681895e-06	ci right 1.182465e-05	k: 13	n:1880000
KS ci ratio: 1.600330e+00	ci left: 8.635571e-07	ci right 6.206549e-06	k: 5	n:1880000
GGT1   1880000 perm   1522 sec   (1235 perm/sec)   p_kst 2.659574e-06   p_cons 6.914894e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 1.047660e+00	ci left: 3.662414e-06	ci right 1.176209e-05	k: 13	n:1890000
KS ci ratio: 1.600330e+00	ci left: 8.589880e-07	ci right 6.173710e-06	k: 5	n:1890000
GGT1   1890000 perm   1537 sec   (1230 perm/sec)   p_kst 2.645503e-06   p_cons 6.878307e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 1.047660e+00	ci left: 3.643138e-06	ci right 1.170018e-05	k: 13	n:1900000
KS ci ratio: 1.600330e+00	ci left: 8.544671e-07	ci right 6.141217e-06	k: 5	n:1900000
GGT1   1900000 perm   1552 sec   (1224 perm/sec)   p_kst 2.631579e-06   p_cons 6.842105e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 1.047660e+00	ci left: 3.624064e-06	ci right 1.163892e-05	k: 13	n:1910000
KS ci ratio: 1.600330e+00	ci left: 8.499934e-07	ci right 6.109064e-06	k: 5	n:1910000
GGT1   1910000 perm   1567 sec   (1219 perm/sec)   p_kst 2.617801e-06   p_cons 6.806283e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 1.047660e+00	ci left: 3.605188e-06	ci right 1.157830e-05	k: 13	n:1920000
KS ci ratio: 1.481618e+00	ci left: 1.146821e-06	ci right 6.801797e-06	k: 6	n:1920000
GGT1   1920000 perm   1582 sec   (1214 perm/sec)   p_kst 3.125000e-06   p_cons 6.770833e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 1.047660e+00	ci left: 3.586509e-06	ci right 1.151831e-05	k: 13	n:1930000
KS ci ratio: 1.481618e+00	ci left: 1.140879e-06	ci right 6.766554e-06	k: 6	n:1930000
GGT1   1930000 perm   1597 sec   (1209 perm/sec)   p_kst 3.108808e-06   p_cons 6.735751e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 1.047660e+00	ci left: 3.568021e-06	ci right 1.145894e-05	k: 13	n:1940000
KS ci ratio: 1.481618e+00	ci left: 1.134998e-06	ci right 6.731675e-06	k: 6	n:1940000
GGT1   1940000 perm   1612 sec   (1204 perm/sec)   p_kst 3.092784e-06   p_cons 6.701031e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 1.047660e+00	ci left: 3.549724e-06	ci right 1.140018e-05	k: 13	n:1950000
KS ci ratio: 1.481618e+00	ci left: 1.129177e-06	ci right 6.697154e-06	k: 6	n:1950000
GGT1   1950000 perm   1627 sec   (1199 perm/sec)   p_kst 3.076923e-06   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 1.047660e+00	ci left: 3.531613e-06	ci right 1.134201e-05	k: 13	n:1960000
KS ci ratio: 1.481618e+00	ci left: 1.123416e-06	ci right 6.662985e-06	k: 6	n:1960000
GGT1   1960000 perm   1642 sec   (1194 perm/sec)   p_kst 3.061224e-06   p_cons 6.632653e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 1.047660e+00	ci left: 3.513686e-06	ci right 1.128444e-05	k: 13	n:1970000
KS ci ratio: 1.385926e+00	ci left: 1.428612e-06	ci right 7.321141e-06	k: 7	n:1970000
GGT1   1970000 perm   1657 sec   (1189 perm/sec)   p_kst 3.553299e-06   p_cons 6.598985e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 1.012136e+00	ci left: 3.865627e-06	ci right 1.186342e-05	k: 14	n:1980000
KS ci ratio: 1.385926e+00	ci left: 1.421397e-06	ci right 7.284166e-06	k: 7	n:1980000
GGT1   1980000 perm   1672 sec   (1184 perm/sec)   p_kst 3.535354e-06   p_cons 7.070707e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 1.012136e+00	ci left: 3.846201e-06	ci right 1.180380e-05	k: 14	n:1990000
KS ci ratio: 1.385926e+00	ci left: 1.414254e-06	ci right 7.247562e-06	k: 7	n:1990000
GGT1   1990000 perm   1688 sec   (1179 perm/sec)   p_kst 3.517588e-06   p_cons 7.035176e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 1.012136e+00	ci left: 3.826970e-06	ci right 1.174478e-05	k: 14	n:2000000
KS ci ratio: 1.385926e+00	ci left: 1.407183e-06	ci right 7.211324e-06	k: 7	n:2000000
GGT1   2000000 perm   1703 sec   (1174 perm/sec)   p_kst 3.500000e-06   p_cons 7.000000e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 1.012136e+00	ci left: 3.807931e-06	ci right 1.168635e-05	k: 14	n:2010000
KS ci ratio: 1.385926e+00	ci left: 1.400182e-06	ci right 7.175447e-06	k: 7	n:2010000
GGT1   2010000 perm   1718 sec   (1170 perm/sec)   p_kst 3.482587e-06   p_cons 6.965174e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 1.012136e+00	ci left: 3.789079e-06	ci right 1.162850e-05	k: 14	n:2020000
KS ci ratio: 1.385926e+00	ci left: 1.393250e-06	ci right 7.139925e-06	k: 7	n:2020000
GGT1   2020000 perm   1734 sec   (1165 perm/sec)   p_kst 3.465347e-06   p_cons 6.930693e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 1.012136e+00	ci left: 3.770414e-06	ci right 1.157121e-05	k: 14	n:2030000
KS ci ratio: 1.385926e+00	ci left: 1.386387e-06	ci right 7.104753e-06	k: 7	n:2030000
GGT1   2030000 perm   1749 sec   (1161 perm/sec)   p_kst 3.448276e-06   p_cons 6.896552e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 1.012136e+00	ci left: 3.751932e-06	ci right 1.151449e-05	k: 14	n:2040000
KS ci ratio: 1.385926e+00	ci left: 1.379591e-06	ci right 7.069926e-06	k: 7	n:2040000
GGT1   2040000 perm   1765 sec   (1156 perm/sec)   p_kst 3.431373e-06   p_cons 6.862745e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 1.012136e+00	ci left: 3.733629e-06	ci right 1.145833e-05	k: 14	n:2050000
KS ci ratio: 1.385926e+00	ci left: 1.372861e-06	ci right 7.035439e-06	k: 7	n:2050000
GGT1   2050000 perm   1781 sec   (1151 perm/sec)   p_kst 3.414634e-06   p_cons 6.829268e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 1.012136e+00	ci left: 3.715505e-06	ci right 1.140270e-05	k: 14	n:2060000
KS ci ratio: 1.385926e+00	ci left: 1.366197e-06	ci right 7.001286e-06	k: 7	n:2060000
GGT1   2060000 perm   1797 sec   (1147 perm/sec)   p_kst 3.398058e-06   p_cons 6.796117e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 1.012136e+00	ci left: 3.697556e-06	ci right 1.134762e-05	k: 14	n:2070000
KS ci ratio: 1.306664e+00	ci left: 1.668519e-06	ci right 7.615053e-06	k: 8	n:2070000
GGT1   2070000 perm   1812 sec   (1142 perm/sec)   p_kst 3.864734e-06   p_cons 6.763285e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 1.012136e+00	ci left: 3.679779e-06	ci right 1.129306e-05	k: 14	n:2080000
KS ci ratio: 1.306664e+00	ci left: 1.660498e-06	ci right 7.578442e-06	k: 8	n:2080000
GGT1   2080000 perm   1829 sec   (1138 perm/sec)   p_kst 3.846154e-06   p_cons 6.730769e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 1.012136e+00	ci left: 3.662172e-06	ci right 1.123903e-05	k: 14	n:2090000
KS ci ratio: 1.306664e+00	ci left: 1.652553e-06	ci right 7.542182e-06	k: 8	n:2090000
GGT1   2090000 perm   1845 sec   (1133 perm/sec)   p_kst 3.827751e-06   p_cons 6.698565e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 1.012136e+00	ci left: 3.644733e-06	ci right 1.118551e-05	k: 14	n:2100000
KS ci ratio: 1.306664e+00	ci left: 1.644683e-06	ci right 7.506267e-06	k: 8	n:2100000
GGT1   2100000 perm   1860 sec   (1129 perm/sec)   p_kst 3.809524e-06   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 9.799961e-01	ci left: 3.978861e-06	ci right 1.172520e-05	k: 15	n:2110000
KS ci ratio: 1.306664e+00	ci left: 1.636889e-06	ci right 7.470692e-06	k: 8	n:2110000
GGT1   2110000 perm   1877 sec   (1124 perm/sec)   p_kst 3.791469e-06   p_cons 7.109005e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 9.799961e-01	ci left: 3.960093e-06	ci right 1.166989e-05	k: 15	n:2120000
KS ci ratio: 1.306664e+00	ci left: 1.629167e-06	ci right 7.435453e-06	k: 8	n:2120000
GGT1   2120000 perm   1893 sec   (1120 perm/sec)   p_kst 3.773585e-06   p_cons 7.075472e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 9.799961e-01	ci left: 3.941501e-06	ci right 1.161510e-05	k: 15	n:2130000
KS ci ratio: 1.306664e+00	ci left: 1.621519e-06	ci right 7.400545e-06	k: 8	n:2130000
GGT1   2130000 perm   1909 sec   (1116 perm/sec)   p_kst 3.755869e-06   p_cons 7.042254e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 9.799961e-01	ci left: 3.923083e-06	ci right 1.156082e-05	k: 15	n:2140000
KS ci ratio: 1.306664e+00	ci left: 1.613942e-06	ci right 7.365963e-06	k: 8	n:2140000
GGT1   2140000 perm   1925 sec   (1112 perm/sec)   p_kst 3.738318e-06   p_cons 7.009346e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 9.799961e-01	ci left: 3.904836e-06	ci right 1.150705e-05	k: 15	n:2150000
KS ci ratio: 1.306664e+00	ci left: 1.606435e-06	ci right 7.331703e-06	k: 8	n:2150000
GGT1   2150000 perm   1941 sec   (1107 perm/sec)   p_kst 3.720930e-06   p_cons 6.976744e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 9.799961e-01	ci left: 3.886758e-06	ci right 1.145378e-05	k: 15	n:2160000
KS ci ratio: 1.306664e+00	ci left: 1.598998e-06	ci right 7.297760e-06	k: 8	n:2160000
GGT1   2160000 perm   1958 sec   (1103 perm/sec)   p_kst 3.703704e-06   p_cons 6.944444e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 9.799962e-01	ci left: 3.868847e-06	ci right 1.140100e-05	k: 15	n:2170000
KS ci ratio: 1.306664e+00	ci left: 1.591629e-06	ci right 7.264130e-06	k: 8	n:2170000
GGT1   2170000 perm   1974 sec   (1099 perm/sec)   p_kst 3.686636e-06   p_cons 6.912442e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 9.507357e-01	ci left: 4.195135e-06	ci right 1.191878e-05	k: 16	n:2180000
KS ci ratio: 1.306664e+00	ci left: 1.584328e-06	ci right 7.230808e-06	k: 8	n:2180000
GGT1   2180000 perm   1991 sec   (1095 perm/sec)   p_kst 3.669725e-06   p_cons 7.339450e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 9.507357e-01	ci left: 4.175979e-06	ci right 1.186436e-05	k: 16	n:2190000
KS ci ratio: 1.306664e+00	ci left: 1.577094e-06	ci right 7.197791e-06	k: 8	n:2190000
GGT1   2190000 perm   2007 sec   (1091 perm/sec)   p_kst 3.652968e-06   p_cons 7.305936e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 9.507358e-01	ci left: 4.156998e-06	ci right 1.181043e-05	k: 16	n:2200000
KS ci ratio: 1.306664e+00	ci left: 1.569925e-06	ci right 7.165073e-06	k: 8	n:2200000
GGT1   2200000 perm   2024 sec   (1087 perm/sec)   p_kst 3.636364e-06   p_cons 7.272727e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 9.507358e-01	ci left: 4.138188e-06	ci right 1.175699e-05	k: 16	n:2210000
KS ci ratio: 1.306664e+00	ci left: 1.562821e-06	ci right 7.132652e-06	k: 8	n:2210000
GGT1   2210000 perm   2041 sec   (1083 perm/sec)   p_kst 3.619910e-06   p_cons 7.239819e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 9.507358e-01	ci left: 4.119547e-06	ci right 1.170403e-05	k: 16	n:2220000
KS ci ratio: 1.306664e+00	ci left: 1.555782e-06	ci right 7.100523e-06	k: 8	n:2220000
GGT1   2220000 perm   2058 sec   (1079 perm/sec)   p_kst 3.603604e-06   p_cons 7.207207e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 9.507358e-01	ci left: 4.101074e-06	ci right 1.165154e-05	k: 16	n:2230000
KS ci ratio: 1.306664e+00	ci left: 1.548805e-06	ci right 7.068682e-06	k: 8	n:2230000
GGT1   2230000 perm   2074 sec   (1075 perm/sec)   p_kst 3.587444e-06   p_cons 7.174888e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 9.507358e-01	ci left: 4.082765e-06	ci right 1.159953e-05	k: 16	n:2240000
KS ci ratio: 1.306664e+00	ci left: 1.541891e-06	ci right 7.037126e-06	k: 8	n:2240000
GGT1   2240000 perm   2092 sec   (1071 perm/sec)   p_kst 3.571429e-06   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 9.507358e-01	ci left: 4.064620e-06	ci right 1.154797e-05	k: 16	n:2250000
KS ci ratio: 1.306664e+00	ci left: 1.535038e-06	ci right 7.005850e-06	k: 8	n:2250000
GGT1   2250000 perm   2109 sec   (1067 perm/sec)   p_kst 3.555556e-06   p_cons 7.111111e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 9.507359e-01	ci left: 4.046635e-06	ci right 1.149688e-05	k: 16	n:2260000
KS ci ratio: 1.306664e+00	ci left: 1.528246e-06	ci right 6.974851e-06	k: 8	n:2260000
GGT1   2260000 perm   2126 sec   (1063 perm/sec)   p_kst 3.539823e-06   p_cons 7.079646e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 9.507359e-01	ci left: 4.028808e-06	ci right 1.144623e-05	k: 16	n:2270000
KS ci ratio: 1.306664e+00	ci left: 1.521513e-06	ci right 6.944124e-06	k: 8	n:2270000
GGT1   2270000 perm   2143 sec   (1059 perm/sec)   p_kst 3.524229e-06   p_cons 7.048458e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 9.507359e-01	ci left: 4.011138e-06	ci right 1.139603e-05	k: 16	n:2280000
KS ci ratio: 1.306664e+00	ci left: 1.514840e-06	ci right 6.913668e-06	k: 8	n:2280000
GGT1   2280000 perm   2160 sec   (1056 perm/sec)   p_kst 3.508772e-06   p_cons 7.017544e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 9.507359e-01	ci left: 3.993622e-06	ci right 1.134626e-05	k: 16	n:2290000
KS ci ratio: 1.306664e+00	ci left: 1.508225e-06	ci right 6.883477e-06	k: 8	n:2290000
GGT1   2290000 perm   2177 sec   (1052 perm/sec)   p_kst 3.493450e-06   p_cons 6.986900e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 9.507359e-01	ci left: 3.976258e-06	ci right 1.129693e-05	k: 16	n:2300000
KS ci ratio: 1.306664e+00	ci left: 1.501667e-06	ci right 6.853549e-06	k: 8	n:2300000
GGT1   2300000 perm   2194 sec   (1048 perm/sec)   p_kst 3.478261e-06   p_cons 6.956522e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 9.507359e-01	ci left: 3.959045e-06	ci right 1.124803e-05	k: 16	n:2310000
KS ci ratio: 1.306664e+00	ci left: 1.495167e-06	ci right 6.823880e-06	k: 8	n:2310000
GGT1   2310000 perm   2212 sec   (1045 perm/sec)   p_kst 3.463203e-06   p_cons 6.926407e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 9.507360e-01	ci left: 3.941980e-06	ci right 1.119954e-05	k: 16	n:2320000
KS ci ratio: 1.306664e+00	ci left: 1.488722e-06	ci right 6.794467e-06	k: 8	n:2320000
GGT1   2320000 perm   2229 sec   (1041 perm/sec)   p_kst 3.448276e-06   p_cons 6.896552e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 9.507360e-01	ci left: 3.925062e-06	ci right 1.115148e-05	k: 16	n:2330000
KS ci ratio: 1.306664e+00	ci left: 1.482333e-06	ci right 6.765306e-06	k: 8	n:2330000
GGT1   2330000 perm   2246 sec   (1037 perm/sec)   p_kst 3.433476e-06   p_cons 6.866953e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 9.507360e-01	ci left: 3.908288e-06	ci right 1.110382e-05	k: 16	n:2340000
KS ci ratio: 1.239610e+00	ci left: 1.758708e-06	ci right 7.301185e-06	k: 9	n:2340000
GGT1   2340000 perm   2264 sec   (1033 perm/sec)   p_kst 3.846154e-06   p_cons 6.837607e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 9.507360e-01	ci left: 3.891657e-06	ci right 1.105657e-05	k: 16	n:2350000
KS ci ratio: 1.239610e+00	ci left: 1.751224e-06	ci right 7.270117e-06	k: 9	n:2350000
GGT1   2350000 perm   2282 sec   (1030 perm/sec)   p_kst 3.829787e-06   p_cons 6.808511e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 9.507360e-01	ci left: 3.875167e-06	ci right 1.100972e-05	k: 16	n:2360000
KS ci ratio: 1.239610e+00	ci left: 1.743804e-06	ci right 7.239311e-06	k: 9	n:2360000
GGT1   2360000 perm   2300 sec   (1026 perm/sec)   p_kst 3.813559e-06   p_cons 6.779661e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 9.507360e-01	ci left: 3.858816e-06	ci right 1.096327e-05	k: 16	n:2370000
KS ci ratio: 1.239610e+00	ci left: 1.736446e-06	ci right 7.208766e-06	k: 9	n:2370000
GGT1   2370000 perm   2318 sec   (1022 perm/sec)   p_kst 3.797468e-06   p_cons 6.751055e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 9.507361e-01	ci left: 3.842602e-06	ci right 1.091720e-05	k: 16	n:2380000
KS ci ratio: 1.239610e+00	ci left: 1.729150e-06	ci right 7.178477e-06	k: 9	n:2380000
GGT1   2380000 perm   2336 sec   (1019 perm/sec)   p_kst 3.781513e-06   p_cons 6.722689e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 9.507361e-01	ci left: 3.826525e-06	ci right 1.087152e-05	k: 16	n:2390000
KS ci ratio: 1.239610e+00	ci left: 1.721915e-06	ci right 7.148441e-06	k: 9	n:2390000
GGT1   2390000 perm   2354 sec   (1015 perm/sec)   p_kst 3.765690e-06   p_cons 6.694561e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 9.507361e-01	ci left: 3.810581e-06	ci right 1.082623e-05	k: 16	n:2400000
KS ci ratio: 1.239610e+00	ci left: 1.714740e-06	ci right 7.118656e-06	k: 9	n:2400000
GGT1   2400000 perm   2372 sec   (1012 perm/sec)   p_kst 3.750000e-06   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 9.507361e-01	ci left: 3.794769e-06	ci right 1.078130e-05	k: 16	n:2410000
KS ci ratio: 1.239610e+00	ci left: 1.707625e-06	ci right 7.089118e-06	k: 9	n:2410000
GGT1   2410000 perm   2390 sec   (1008 perm/sec)   p_kst 3.734440e-06   p_cons 6.639004e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 9.507361e-01	ci left: 3.779088e-06	ci right 1.073675e-05	k: 16	n:2420000
KS ci ratio: 1.239610e+00	ci left: 1.700569e-06	ci right 7.059824e-06	k: 9	n:2420000
GGT1   2420000 perm   2408 sec   (1005 perm/sec)   p_kst 3.719008e-06   p_cons 6.611570e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 9.507361e-01	ci left: 3.763536e-06	ci right 1.069257e-05	k: 16	n:2430000
KS ci ratio: 1.239610e+00	ci left: 1.693571e-06	ci right 7.030772e-06	k: 9	n:2430000
GGT1   2430000 perm   2427 sec   (1001 perm/sec)   p_kst 3.703704e-06   p_cons 6.584362e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 9.507361e-01	ci left: 3.748112e-06	ci right 1.064875e-05	k: 16	n:2440000
KS ci ratio: 1.239610e+00	ci left: 1.686630e-06	ci right 7.001957e-06	k: 9	n:2440000
GGT1   2440000 perm   2445 sec   (998 perm/sec)   p_kst 3.688525e-06   p_cons 6.557377e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 9.507362e-01	ci left: 3.732814e-06	ci right 1.060528e-05	k: 16	n:2450000
KS ci ratio: 1.239610e+00	ci left: 1.679745e-06	ci right 6.973378e-06	k: 9	n:2450000
GGT1   2450000 perm   2463 sec   (995 perm/sec)   p_kst 3.673469e-06   p_cons 6.530612e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 9.507362e-01	ci left: 3.717640e-06	ci right 1.056217e-05	k: 16	n:2460000
KS ci ratio: 1.239610e+00	ci left: 1.672917e-06	ci right 6.945031e-06	k: 9	n:2460000
GGT1   2460000 perm   2482 sec   (991 perm/sec)   p_kst 3.658537e-06   p_cons 6.504065e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 9.507362e-01	ci left: 3.702588e-06	ci right 1.051941e-05	k: 16	n:2470000
KS ci ratio: 1.239610e+00	ci left: 1.666144e-06	ci right 6.916913e-06	k: 9	n:2470000
GGT1   2470000 perm   2501 sec   (988 perm/sec)   p_kst 3.643725e-06   p_cons 6.477733e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 9.507362e-01	ci left: 3.687659e-06	ci right 1.047699e-05	k: 16	n:2480000
KS ci ratio: 1.239610e+00	ci left: 1.659426e-06	ci right 6.889022e-06	k: 9	n:2480000
GGT1   2480000 perm   2519 sec   (984 perm/sec)   p_kst 3.629032e-06   p_cons 6.451613e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 9.507362e-01	ci left: 3.672849e-06	ci right 1.043492e-05	k: 16	n:2490000
KS ci ratio: 1.239610e+00	ci left: 1.652762e-06	ci right 6.861356e-06	k: 9	n:2490000
GGT1   2490000 perm   2538 sec   (981 perm/sec)   p_kst 3.614458e-06   p_cons 6.425703e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 9.507362e-01	ci left: 3.658157e-06	ci right 1.039318e-05	k: 16	n:2500000
KS ci ratio: 1.239610e+00	ci left: 1.646151e-06	ci right 6.833910e-06	k: 9	n:2500000
GGT1   2500000 perm   2557 sec   (978 perm/sec)   p_kst 3.600000e-06   p_cons 6.400000e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 9.507362e-01	ci left: 3.643583e-06	ci right 1.035177e-05	k: 16	n:2510000
KS ci ratio: 1.239610e+00	ci left: 1.639592e-06	ci right 6.806684e-06	k: 9	n:2510000
GGT1   2510000 perm   2576 sec   (974 perm/sec)   p_kst 3.585657e-06   p_cons 6.374502e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 9.507363e-01	ci left: 3.629124e-06	ci right 1.031069e-05	k: 16	n:2520000
KS ci ratio: 1.181922e+00	ci left: 1.902934e-06	ci right 7.297748e-06	k: 10	n:2520000
GGT1   2520000 perm   2595 sec   (971 perm/sec)   p_kst 3.968254e-06   p_cons 6.349206e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 9.507363e-01	ci left: 3.614780e-06	ci right 1.026994e-05	k: 16	n:2530000
KS ci ratio: 1.181922e+00	ci left: 1.895412e-06	ci right 7.268903e-06	k: 10	n:2530000
GGT1   2530000 perm   2613 sec   (968 perm/sec)   p_kst 3.952569e-06   p_cons 6.324111e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 9.507363e-01	ci left: 3.600548e-06	ci right 1.022951e-05	k: 16	n:2540000
KS ci ratio: 1.181922e+00	ci left: 1.887950e-06	ci right 7.240286e-06	k: 10	n:2540000
GGT1   2540000 perm   2632 sec   (965 perm/sec)   p_kst 3.937008e-06   p_cons 6.299213e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 9.507363e-01	ci left: 3.586429e-06	ci right 1.018939e-05	k: 16	n:2550000
KS ci ratio: 1.181922e+00	ci left: 1.880546e-06	ci right 7.211892e-06	k: 10	n:2550000
GGT1   2550000 perm   2652 sec   (962 perm/sec)   p_kst 3.921569e-06   p_cons 6.274510e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 9.507363e-01	ci left: 3.572419e-06	ci right 1.014959e-05	k: 16	n:2560000
KS ci ratio: 1.181922e+00	ci left: 1.873200e-06	ci right 7.183721e-06	k: 10	n:2560000
GGT1   2560000 perm   2671 sec   (958 perm/sec)   p_kst 3.906250e-06   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 9.507363e-01	ci left: 3.558519e-06	ci right 1.011010e-05	k: 16	n:2570000
KS ci ratio: 1.181922e+00	ci left: 1.865912e-06	ci right 7.155769e-06	k: 10	n:2570000
GGT1   2570000 perm   2691 sec   (955 perm/sec)   p_kst 3.891051e-06   p_cons 6.225681e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 9.507363e-01	ci left: 3.544726e-06	ci right 1.007091e-05	k: 16	n:2580000
KS ci ratio: 1.181922e+00	ci left: 1.858679e-06	ci right 7.128033e-06	k: 10	n:2580000
GGT1   2580000 perm   2711 sec   (952 perm/sec)   p_kst 3.875969e-06   p_cons 6.201550e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 9.239495e-01	ci left: 3.823605e-06	ci right 1.050911e-05	k: 17	n:2590000
KS ci ratio: 1.181922e+00	ci left: 1.851503e-06	ci right 7.100512e-06	k: 10	n:2590000
GGT1   2590000 perm   2730 sec   (949 perm/sec)   p_kst 3.861004e-06   p_cons 6.563707e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 9.239495e-01	ci left: 3.808899e-06	ci right 1.046869e-05	k: 17	n:2600000
KS ci ratio: 1.181922e+00	ci left: 1.844382e-06	ci right 7.073202e-06	k: 10	n:2600000
GGT1   2600000 perm   2750 sec   (946 perm/sec)   p_kst 3.846154e-06   p_cons 6.538462e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 9.239495e-01	ci left: 3.794306e-06	ci right 1.042858e-05	k: 17	n:2610000
KS ci ratio: 1.181922e+00	ci left: 1.837315e-06	ci right 7.046102e-06	k: 10	n:2610000
GGT1   2610000 perm   2769 sec   (942 perm/sec)   p_kst 3.831418e-06   p_cons 6.513410e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 9.239495e-01	ci left: 3.779824e-06	ci right 1.038878e-05	k: 17	n:2620000
KS ci ratio: 1.181922e+00	ci left: 1.830302e-06	ci right 7.019209e-06	k: 10	n:2620000
GGT1   2620000 perm   2789 sec   (939 perm/sec)   p_kst 3.816794e-06   p_cons 6.488550e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 9.239495e-01	ci left: 3.765452e-06	ci right 1.034928e-05	k: 17	n:2630000
KS ci ratio: 1.181922e+00	ci left: 1.823343e-06	ci right 6.992520e-06	k: 10	n:2630000
GGT1   2630000 perm   2809 sec   (936 perm/sec)   p_kst 3.802281e-06   p_cons 6.463878e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 9.239495e-01	ci left: 3.751189e-06	ci right 1.031007e-05	k: 17	n:2640000
KS ci ratio: 1.181922e+00	ci left: 1.816437e-06	ci right 6.966033e-06	k: 10	n:2640000
GGT1   2640000 perm   2828 sec   (933 perm/sec)   p_kst 3.787879e-06   p_cons 6.439394e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 9.239495e-01	ci left: 3.737033e-06	ci right 1.027117e-05	k: 17	n:2650000
KS ci ratio: 1.131604e+00	ci left: 2.072138e-06	ci right 7.427172e-06	k: 11	n:2650000
GGT1   2650000 perm   2848 sec   (930 perm/sec)   p_kst 4.150943e-06   p_cons 6.415094e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 9.239496e-01	ci left: 3.722984e-06	ci right 1.023255e-05	k: 17	n:2660000
KS ci ratio: 1.131604e+00	ci left: 2.064348e-06	ci right 7.399251e-06	k: 11	n:2660000
GGT1   2660000 perm   2869 sec   (927 perm/sec)   p_kst 4.135338e-06   p_cons 6.390977e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 8.993063e-01	ci left: 3.995488e-06	ci right 1.065457e-05	k: 18	n:2670000
KS ci ratio: 1.131604e+00	ci left: 2.056616e-06	ci right 7.371538e-06	k: 11	n:2670000
GGT1   2670000 perm   2889 sec   (924 perm/sec)   p_kst 4.119850e-06   p_cons 6.741573e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 8.993063e-01	ci left: 3.980580e-06	ci right 1.061482e-05	k: 18	n:2680000
KS ci ratio: 1.131604e+00	ci left: 2.048942e-06	ci right 7.344032e-06	k: 11	n:2680000
GGT1   2680000 perm   2909 sec   (921 perm/sec)   p_kst 4.104478e-06   p_cons 6.716418e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 8.993063e-01	ci left: 3.965782e-06	ci right 1.057536e-05	k: 18	n:2690000
KS ci ratio: 1.131604e+00	ci left: 2.041325e-06	ci right 7.316731e-06	k: 11	n:2690000
GGT1   2690000 perm   2929 sec   (918 perm/sec)   p_kst 4.089219e-06   p_cons 6.691450e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 8.993063e-01	ci left: 3.951094e-06	ci right 1.053619e-05	k: 18	n:2700000
KS ci ratio: 1.131604e+00	ci left: 2.033765e-06	ci right 7.289632e-06	k: 11	n:2700000
GGT1   2700000 perm   2950 sec   (915 perm/sec)   p_kst 4.074074e-06   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 8.993064e-01	ci left: 3.936514e-06	ci right 1.049731e-05	k: 18	n:2710000
KS ci ratio: 1.131604e+00	ci left: 2.026260e-06	ci right 7.262733e-06	k: 11	n:2710000
GGT1   2710000 perm   2970 sec   (912 perm/sec)   p_kst 4.059041e-06   p_cons 6.642066e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 8.993064e-01	ci left: 3.922042e-06	ci right 1.045872e-05	k: 18	n:2720000
KS ci ratio: 1.131604e+00	ci left: 2.018811e-06	ci right 7.236032e-06	k: 11	n:2720000
GGT1   2720000 perm   2990 sec   (910 perm/sec)   p_kst 4.044118e-06   p_cons 6.617647e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 8.993064e-01	ci left: 3.907675e-06	ci right 1.042041e-05	k: 18	n:2730000
KS ci ratio: 1.131604e+00	ci left: 2.011416e-06	ci right 7.209526e-06	k: 11	n:2730000
GGT1   2730000 perm   3011 sec   (907 perm/sec)   p_kst 4.029304e-06   p_cons 6.593407e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 8.765353e-01	ci left: 4.174911e-06	ci right 1.082876e-05	k: 19	n:2740000
KS ci ratio: 1.131604e+00	ci left: 2.004075e-06	ci right 7.183214e-06	k: 11	n:2740000
GGT1   2740000 perm   3032 sec   (904 perm/sec)   p_kst 4.014599e-06   p_cons 6.934307e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 8.765353e-01	ci left: 4.159729e-06	ci right 1.078938e-05	k: 19	n:2750000
KS ci ratio: 1.131604e+00	ci left: 1.996787e-06	ci right 7.157094e-06	k: 11	n:2750000
GGT1   2750000 perm   3053 sec   (901 perm/sec)   p_kst 4.000000e-06   p_cons 6.909091e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 8.765353e-01	ci left: 4.144658e-06	ci right 1.075029e-05	k: 19	n:2760000
KS ci ratio: 1.131604e+00	ci left: 1.989552e-06	ci right 7.131162e-06	k: 11	n:2760000
GGT1   2760000 perm   3074 sec   (898 perm/sec)   p_kst 3.985507e-06   p_cons 6.884058e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 8.765353e-01	ci left: 4.129695e-06	ci right 1.071148e-05	k: 19	n:2770000
KS ci ratio: 1.131604e+00	ci left: 1.982370e-06	ci right 7.105418e-06	k: 11	n:2770000
GGT1   2770000 perm   3094 sec   (895 perm/sec)   p_kst 3.971119e-06   p_cons 6.859206e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 8.765353e-01	ci left: 4.114840e-06	ci right 1.067295e-05	k: 19	n:2780000
KS ci ratio: 1.131604e+00	ci left: 1.975239e-06	ci right 7.079859e-06	k: 11	n:2780000
GGT1   2780000 perm   3115 sec   (892 perm/sec)   p_kst 3.956835e-06   p_cons 6.834532e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 8.765353e-01	ci left: 4.100091e-06	ci right 1.063469e-05	k: 19	n:2790000
KS ci ratio: 1.131604e+00	ci left: 1.968159e-06	ci right 7.054483e-06	k: 11	n:2790000
GGT1   2790000 perm   3136 sec   (890 perm/sec)   p_kst 3.942652e-06   p_cons 6.810036e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 8.765354e-01	ci left: 4.085448e-06	ci right 1.059671e-05	k: 19	n:2800000
KS ci ratio: 1.131604e+00	ci left: 1.961130e-06	ci right 7.029289e-06	k: 11	n:2800000
GGT1   2800000 perm   3157 sec   (887 perm/sec)   p_kst 3.928571e-06   p_cons 6.785714e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 8.765354e-01	ci left: 4.070909e-06	ci right 1.055900e-05	k: 19	n:2810000
KS ci ratio: 1.131604e+00	ci left: 1.954151e-06	ci right 7.004273e-06	k: 11	n:2810000
GGT1   2810000 perm   3178 sec   (884 perm/sec)   p_kst 3.914591e-06   p_cons 6.761566e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 8.765354e-01	ci left: 4.056473e-06	ci right 1.052156e-05	k: 19	n:2820000
KS ci ratio: 1.131604e+00	ci left: 1.947222e-06	ci right 6.979436e-06	k: 11	n:2820000
GGT1   2820000 perm   3199 sec   (881 perm/sec)   p_kst 3.900709e-06   p_cons 6.737589e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 8.765354e-01	ci left: 4.042139e-06	ci right 1.048438e-05	k: 19	n:2830000
KS ci ratio: 1.131604e+00	ci left: 1.940341e-06	ci right 6.954773e-06	k: 11	n:2830000
GGT1   2830000 perm   3220 sec   (879 perm/sec)   p_kst 3.886926e-06   p_cons 6.713781e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 8.765354e-01	ci left: 4.027906e-06	ci right 1.044746e-05	k: 19	n:2840000
KS ci ratio: 1.131604e+00	ci left: 1.933509e-06	ci right 6.930285e-06	k: 11	n:2840000
GGT1   2840000 perm   3241 sec   (876 perm/sec)   p_kst 3.873239e-06   p_cons 6.690141e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 8.765354e-01	ci left: 4.013773e-06	ci right 1.041081e-05	k: 19	n:2850000
KS ci ratio: 1.131604e+00	ci left: 1.926724e-06	ci right 6.905968e-06	k: 11	n:2850000
GGT1   2850000 perm   3263 sec   (874 perm/sec)   p_kst 3.859649e-06   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 8.765354e-01	ci left: 3.999739e-06	ci right 1.037440e-05	k: 19	n:2860000
KS ci ratio: 1.131604e+00	ci left: 1.919988e-06	ci right 6.881821e-06	k: 11	n:2860000
GGT1   2860000 perm   3284 sec   (871 perm/sec)   p_kst 3.846154e-06   p_cons 6.643357e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 8.765354e-01	ci left: 3.985803e-06	ci right 1.033826e-05	k: 19	n:2870000
KS ci ratio: 1.131604e+00	ci left: 1.913298e-06	ci right 6.857843e-06	k: 11	n:2870000
GGT1   2870000 perm   3306 sec   (868 perm/sec)   p_kst 3.832753e-06   p_cons 6.620209e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 8.765355e-01	ci left: 3.971963e-06	ci right 1.030236e-05	k: 19	n:2880000
KS ci ratio: 1.131604e+00	ci left: 1.906654e-06	ci right 6.834031e-06	k: 11	n:2880000
GGT1   2880000 perm   3327 sec   (866 perm/sec)   p_kst 3.819444e-06   p_cons 6.597222e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 8.765355e-01	ci left: 3.958219e-06	ci right 1.026671e-05	k: 19	n:2890000
KS ci ratio: 1.131604e+00	ci left: 1.900057e-06	ci right 6.810384e-06	k: 11	n:2890000
GGT1   2890000 perm   3349 sec   (863 perm/sec)   p_kst 3.806228e-06   p_cons 6.574394e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 8.765355e-01	ci left: 3.944570e-06	ci right 1.023131e-05	k: 19	n:2900000
KS ci ratio: 1.131604e+00	ci left: 1.893505e-06	ci right 6.786900e-06	k: 11	n:2900000
GGT1   2900000 perm   3371 sec   (860 perm/sec)   p_kst 3.793103e-06   p_cons 6.551724e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 8.765355e-01	ci left: 3.931015e-06	ci right 1.019615e-05	k: 19	n:2910000
KS ci ratio: 1.131604e+00	ci left: 1.886998e-06	ci right 6.763577e-06	k: 11	n:2910000
GGT1   2910000 perm   3393 sec   (858 perm/sec)   p_kst 3.780069e-06   p_cons 6.529210e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 8.765355e-01	ci left: 3.917553e-06	ci right 1.016123e-05	k: 19	n:2920000
KS ci ratio: 1.131604e+00	ci left: 1.880536e-06	ci right 6.740414e-06	k: 11	n:2920000
GGT1   2920000 perm   3415 sec   (855 perm/sec)   p_kst 3.767123e-06   p_cons 6.506849e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 8.765355e-01	ci left: 3.904182e-06	ci right 1.012655e-05	k: 19	n:2930000
KS ci ratio: 1.131604e+00	ci left: 1.874118e-06	ci right 6.717409e-06	k: 11	n:2930000
GGT1   2930000 perm   3437 sec   (853 perm/sec)   p_kst 3.754266e-06   p_cons 6.484642e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 8.765355e-01	ci left: 3.890903e-06	ci right 1.009211e-05	k: 19	n:2940000
KS ci ratio: 1.131604e+00	ci left: 1.867743e-06	ci right 6.694561e-06	k: 11	n:2940000
GGT1   2940000 perm   3459 sec   (850 perm/sec)   p_kst 3.741497e-06   p_cons 6.462585e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 8.765355e-01	ci left: 3.877713e-06	ci right 1.005790e-05	k: 19	n:2950000
KS ci ratio: 1.131604e+00	ci left: 1.861412e-06	ci right 6.671868e-06	k: 11	n:2950000
GGT1   2950000 perm   3481 sec   (848 perm/sec)   p_kst 3.728814e-06   p_cons 6.440678e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 8.765355e-01	ci left: 3.864613e-06	ci right 1.002392e-05	k: 19	n:2960000
KS ci ratio: 1.131604e+00	ci left: 1.855123e-06	ci right 6.649328e-06	k: 11	n:2960000
GGT1   2960000 perm   3503 sec   (845 perm/sec)   p_kst 3.716216e-06   p_cons 6.418919e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 8.765355e-01	ci left: 3.851601e-06	ci right 9.990168e-06	k: 19	n:2970000
KS ci ratio: 1.131604e+00	ci left: 1.848877e-06	ci right 6.626939e-06	k: 11	n:2970000
GGT1   2970000 perm   3525 sec   (843 perm/sec)   p_kst 3.703704e-06   p_cons 6.397306e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 8.765356e-01	ci left: 3.838676e-06	ci right 9.956644e-06	k: 19	n:2980000
KS ci ratio: 1.087210e+00	ci left: 2.080732e-06	ci right 7.034078e-06	k: 12	n:2980000
GGT1   2980000 perm   3547 sec   (840 perm/sec)   p_kst 4.026846e-06   p_cons 6.375839e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 8.554110e-01	ci left: 4.085797e-06	ci right 1.033054e-05	k: 20	n:2990000
KS ci ratio: 1.087210e+00	ci left: 2.073773e-06	ci right 7.010553e-06	k: 12	n:2990000
GGT1   2990000 perm   3569 sec   (838 perm/sec)   p_kst 4.013378e-06   p_cons 6.688963e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 8.554110e-01	ci left: 4.072178e-06	ci right 1.029611e-05	k: 20	n:3000000
KS ci ratio: 1.087210e+00	ci left: 2.066860e-06	ci right 6.987185e-06	k: 12	n:3000000
GGT1   3000000 perm   3592 sec   (835 perm/sec)   p_kst 4.000000e-06   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 8.554110e-01	ci left: 4.058649e-06	ci right 1.026190e-05	k: 20	n:3010000
KS ci ratio: 1.087210e+00	ci left: 2.059993e-06	ci right 6.963971e-06	k: 12	n:3010000
GGT1   3010000 perm   3614 sec   (833 perm/sec)   p_kst 3.986711e-06   p_cons 6.644518e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 8.554110e-01	ci left: 4.045210e-06	ci right 1.022792e-05	k: 20	n:3020000
KS ci ratio: 1.087210e+00	ci left: 2.053172e-06	ci right 6.940912e-06	k: 12	n:3020000
GGT1   3020000 perm   3637 sec   (830 perm/sec)   p_kst 3.973510e-06   p_cons 6.622517e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 8.554110e-01	ci left: 4.031859e-06	ci right 1.019417e-05	k: 20	n:3030000
KS ci ratio: 1.087210e+00	ci left: 2.046396e-06	ci right 6.918005e-06	k: 12	n:3030000
GGT1   3030000 perm   3660 sec   (828 perm/sec)   p_kst 3.960396e-06   p_cons 6.600660e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 8.554110e-01	ci left: 4.018596e-06	ci right 1.016063e-05	k: 20	n:3040000
KS ci ratio: 1.087210e+00	ci left: 2.039664e-06	ci right 6.895248e-06	k: 12	n:3040000
GGT1   3040000 perm   3682 sec   (826 perm/sec)   p_kst 3.947368e-06   p_cons 6.578947e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 8.554110e-01	ci left: 4.005421e-06	ci right 1.012732e-05	k: 20	n:3050000
KS ci ratio: 1.087210e+00	ci left: 2.032977e-06	ci right 6.872641e-06	k: 12	n:3050000
GGT1   3050000 perm   3705 sec   (823 perm/sec)   p_kst 3.934426e-06   p_cons 6.557377e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 8.554111e-01	ci left: 3.992331e-06	ci right 1.009422e-05	k: 20	n:3060000
KS ci ratio: 1.087210e+00	ci left: 2.026333e-06	ci right 6.850181e-06	k: 12	n:3060000
GGT1   3060000 perm   3727 sec   (821 perm/sec)   p_kst 3.921569e-06   p_cons 6.535948e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 8.554111e-01	ci left: 3.979327e-06	ci right 1.006134e-05	k: 20	n:3070000
KS ci ratio: 1.087210e+00	ci left: 2.019733e-06	ci right 6.827868e-06	k: 12	n:3070000
GGT1   3070000 perm   3750 sec   (819 perm/sec)   p_kst 3.908795e-06   p_cons 6.514658e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 8.554111e-01	ci left: 3.966407e-06	ci right 1.002868e-05	k: 20	n:3080000
KS ci ratio: 1.087210e+00	ci left: 2.013175e-06	ci right 6.805700e-06	k: 12	n:3080000
GGT1   3080000 perm   3773 sec   (816 perm/sec)   p_kst 3.896104e-06   p_cons 6.493506e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 8.554111e-01	ci left: 3.953571e-06	ci right 9.996221e-06	k: 20	n:3090000
KS ci ratio: 1.087210e+00	ci left: 2.006660e-06	ci right 6.783675e-06	k: 12	n:3090000
GGT1   3090000 perm   3796 sec   (814 perm/sec)   p_kst 3.883495e-06   p_cons 6.472492e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 8.554111e-01	ci left: 3.940817e-06	ci right 9.963975e-06	k: 20	n:3100000
KS ci ratio: 1.087210e+00	ci left: 2.000187e-06	ci right 6.761792e-06	k: 12	n:3100000
GGT1   3100000 perm   3818 sec   (812 perm/sec)   p_kst 3.870968e-06   p_cons 6.451613e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 8.554111e-01	ci left: 3.928146e-06	ci right 9.931937e-06	k: 20	n:3110000
KS ci ratio: 1.087210e+00	ci left: 1.993756e-06	ci right 6.740050e-06	k: 12	n:3110000
GGT1   3110000 perm   3842 sec   (810 perm/sec)   p_kst 3.858521e-06   p_cons 6.430868e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 8.554111e-01	ci left: 3.915555e-06	ci right 9.900104e-06	k: 20	n:3120000
KS ci ratio: 1.087210e+00	ci left: 1.987365e-06	ci right 6.718447e-06	k: 12	n:3120000
GGT1   3120000 perm   3865 sec   (807 perm/sec)   p_kst 3.846154e-06   p_cons 6.410256e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 8.554111e-01	ci left: 3.903046e-06	ci right 9.868474e-06	k: 20	n:3130000
KS ci ratio: 1.087210e+00	ci left: 1.981016e-06	ci right 6.696982e-06	k: 12	n:3130000
GGT1   3130000 perm   3889 sec   (805 perm/sec)   p_kst 3.833866e-06   p_cons 6.389776e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 8.554111e-01	ci left: 3.890616e-06	ci right 9.837046e-06	k: 20	n:3140000
KS ci ratio: 1.087210e+00	ci left: 1.974707e-06	ci right 6.675654e-06	k: 12	n:3140000
GGT1   3140000 perm   3912 sec   (803 perm/sec)   p_kst 3.821656e-06   p_cons 6.369427e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 8.554111e-01	ci left: 3.878264e-06	ci right 9.805817e-06	k: 20	n:3150000
KS ci ratio: 1.087210e+00	ci left: 1.968438e-06	ci right 6.654462e-06	k: 12	n:3150000
GGT1   3150000 perm   3935 sec   (800 perm/sec)   p_kst 3.809524e-06   p_cons 6.349206e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 8.554112e-01	ci left: 3.865991e-06	ci right 9.774786e-06	k: 20	n:3160000
KS ci ratio: 1.087210e+00	ci left: 1.962209e-06	ci right 6.633404e-06	k: 12	n:3160000
GGT1   3160000 perm   3959 sec   (798 perm/sec)   p_kst 3.797468e-06   p_cons 6.329114e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 8.554112e-01	ci left: 3.853796e-06	ci right 9.743951e-06	k: 20	n:3170000
KS ci ratio: 1.087210e+00	ci left: 1.956019e-06	ci right 6.612478e-06	k: 12	n:3170000
GGT1   3170000 perm   3983 sec   (796 perm/sec)   p_kst 3.785489e-06   p_cons 6.309148e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 8.554112e-01	ci left: 3.841677e-06	ci right 9.713310e-06	k: 20	n:3180000
KS ci ratio: 1.087210e+00	ci left: 1.949868e-06	ci right 6.591684e-06	k: 12	n:3180000
GGT1   3180000 perm   4006 sec   (794 perm/sec)   p_kst 3.773585e-06   p_cons 6.289308e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 8.554112e-01	ci left: 3.829634e-06	ci right 9.682861e-06	k: 20	n:3190000
KS ci ratio: 1.087210e+00	ci left: 1.943755e-06	ci right 6.571021e-06	k: 12	n:3190000
GGT1   3190000 perm   4029 sec   (792 perm/sec)   p_kst 3.761755e-06   p_cons 6.269592e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 8.554112e-01	ci left: 3.817666e-06	ci right 9.652602e-06	k: 20	n:3200000
KS ci ratio: 1.087210e+00	ci left: 1.937681e-06	ci right 6.550486e-06	k: 12	n:3200000
GGT1   3200000 perm   4053 sec   (790 perm/sec)   p_kst 3.750000e-06   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 8.554112e-01	ci left: 3.805773e-06	ci right 9.622531e-06	k: 20	n:3210000
KS ci ratio: 1.087210e+00	ci left: 1.931645e-06	ci right 6.530080e-06	k: 12	n:3210000
GGT1   3210000 perm   4076 sec   (787 perm/sec)   p_kst 3.738318e-06   p_cons 6.230530e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 8.554112e-01	ci left: 3.793954e-06	ci right 9.592648e-06	k: 20	n:3220000
KS ci ratio: 1.087210e+00	ci left: 1.925646e-06	ci right 6.509800e-06	k: 12	n:3220000
GGT1   3220000 perm   4100 sec   (785 perm/sec)   p_kst 3.726708e-06   p_cons 6.211180e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 8.554112e-01	ci left: 3.782208e-06	ci right 9.562949e-06	k: 20	n:3230000
KS ci ratio: 1.087210e+00	ci left: 1.919684e-06	ci right 6.489646e-06	k: 12	n:3230000
GGT1   3230000 perm   4124 sec   (783 perm/sec)   p_kst 3.715170e-06   p_cons 6.191950e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 8.554112e-01	ci left: 3.770535e-06	ci right 9.533434e-06	k: 20	n:3240000
KS ci ratio: 1.087210e+00	ci left: 1.913759e-06	ci right 6.469616e-06	k: 12	n:3240000
GGT1   3240000 perm   4148 sec   (781 perm/sec)   p_kst 3.703704e-06   p_cons 6.172840e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 8.554112e-01	ci left: 3.758933e-06	ci right 9.504100e-06	k: 20	n:3250000
KS ci ratio: 1.087210e+00	ci left: 1.907871e-06	ci right 6.449710e-06	k: 12	n:3250000
GGT1   3250000 perm   4172 sec   (779 perm/sec)   p_kst 3.692308e-06   p_cons 6.153846e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 8.554112e-01	ci left: 3.747403e-06	ci right 9.474947e-06	k: 20	n:3260000
KS ci ratio: 1.087210e+00	ci left: 1.902018e-06	ci right 6.429925e-06	k: 12	n:3260000
GGT1   3260000 perm   4197 sec   (777 perm/sec)   p_kst 3.680982e-06   p_cons 6.134969e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 8.554113e-01	ci left: 3.735943e-06	ci right 9.445971e-06	k: 20	n:3270000
KS ci ratio: 1.087210e+00	ci left: 1.896202e-06	ci right 6.410262e-06	k: 12	n:3270000
GGT1   3270000 perm   4221 sec   (775 perm/sec)   p_kst 3.669725e-06   p_cons 6.116208e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 8.554113e-01	ci left: 3.724553e-06	ci right 9.417173e-06	k: 20	n:3280000
KS ci ratio: 1.087210e+00	ci left: 1.890421e-06	ci right 6.390718e-06	k: 12	n:3280000
GGT1   3280000 perm   4245 sec   (773 perm/sec)   p_kst 3.658537e-06   p_cons 6.097561e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 8.554113e-01	ci left: 3.713232e-06	ci right 9.388549e-06	k: 20	n:3290000
KS ci ratio: 1.087210e+00	ci left: 1.884675e-06	ci right 6.371294e-06	k: 12	n:3290000
GGT1   3290000 perm   4269 sec   (771 perm/sec)   p_kst 3.647416e-06   p_cons 6.079027e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 8.554113e-01	ci left: 3.701979e-06	ci right 9.360099e-06	k: 20	n:3300000
KS ci ratio: 1.087210e+00	ci left: 1.878964e-06	ci right 6.351987e-06	k: 12	n:3300000
GGT1   3300000 perm   4293 sec   (769 perm/sec)   p_kst 3.636364e-06   p_cons 6.060606e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 8.554113e-01	ci left: 3.690795e-06	ci right 9.331821e-06	k: 20	n:3310000
KS ci ratio: 1.087210e+00	ci left: 1.873287e-06	ci right 6.332797e-06	k: 12	n:3310000
GGT1   3310000 perm   4318 sec   (767 perm/sec)   p_kst 3.625378e-06   p_cons 6.042296e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 8.554113e-01	ci left: 3.679678e-06	ci right 9.303713e-06	k: 20	n:3320000
KS ci ratio: 1.087210e+00	ci left: 1.867644e-06	ci right 6.313722e-06	k: 12	n:3320000
GGT1   3320000 perm   4342 sec   (765 perm/sec)   p_kst 3.614458e-06   p_cons 6.024096e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 8.554113e-01	ci left: 3.668628e-06	ci right 9.275774e-06	k: 20	n:3330000
KS ci ratio: 1.087210e+00	ci left: 1.862036e-06	ci right 6.294762e-06	k: 12	n:3330000
GGT1   3330000 perm   4368 sec   (762 perm/sec)   p_kst 3.603604e-06   p_cons 6.006006e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 8.554113e-01	ci left: 3.657644e-06	ci right 9.248002e-06	k: 20	n:3340000
KS ci ratio: 1.087210e+00	ci left: 1.856461e-06	ci right 6.275915e-06	k: 12	n:3340000
GGT1   3340000 perm   4392 sec   (760 perm/sec)   p_kst 3.592814e-06   p_cons 5.988024e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 8.554113e-01	ci left: 3.646726e-06	ci right 9.220396e-06	k: 20	n:3350000
KS ci ratio: 1.087210e+00	ci left: 1.850919e-06	ci right 6.257181e-06	k: 12	n:3350000
GGT1   3350000 perm   4417 sec   (758 perm/sec)   p_kst 3.582090e-06   p_cons 5.970149e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 8.554113e-01	ci left: 3.635873e-06	ci right 9.192955e-06	k: 20	n:3360000
KS ci ratio: 1.087210e+00	ci left: 1.845411e-06	ci right 6.238559e-06	k: 12	n:3360000
GGT1   3360000 perm   4442 sec   (756 perm/sec)   p_kst 3.571429e-06   p_cons 5.952381e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 8.554113e-01	ci left: 3.625084e-06	ci right 9.165676e-06	k: 20	n:3370000
KS ci ratio: 1.087210e+00	ci left: 1.839935e-06	ci right 6.220047e-06	k: 12	n:3370000
GGT1   3370000 perm   4468 sec   (754 perm/sec)   p_kst 3.560831e-06   p_cons 5.934718e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 8.554113e-01	ci left: 3.614359e-06	ci right 9.138559e-06	k: 20	n:3380000
KS ci ratio: 1.047662e+00	ci left: 2.047916e-06	ci right 6.577031e-06	k: 13	n:3380000
GGT1   3380000 perm   4493 sec   (752 perm/sec)   p_kst 3.846154e-06   p_cons 5.917160e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 8.554114e-01	ci left: 3.603697e-06	ci right 9.111601e-06	k: 20	n:3390000
KS ci ratio: 1.047662e+00	ci left: 2.041875e-06	ci right 6.557630e-06	k: 13	n:3390000
GGT1   3390000 perm   4519 sec   (750 perm/sec)   p_kst 3.834808e-06   p_cons 5.899705e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 8.554114e-01	ci left: 3.593098e-06	ci right 9.084802e-06	k: 20	n:3400000
KS ci ratio: 1.047662e+00	ci left: 2.035870e-06	ci right 6.538343e-06	k: 13	n:3400000
GGT1   3400000 perm   4544 sec   (748 perm/sec)   p_kst 3.823529e-06   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 8.554114e-01	ci left: 3.582561e-06	ci right 9.058161e-06	k: 20	n:3410000
KS ci ratio: 1.047662e+00	ci left: 2.029900e-06	ci right 6.519169e-06	k: 13	n:3410000
GGT1   3410000 perm   4570 sec   (746 perm/sec)   p_kst 3.812317e-06   p_cons 5.865103e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 8.554114e-01	ci left: 3.572085e-06	ci right 9.031675e-06	k: 20	n:3420000
KS ci ratio: 1.047662e+00	ci left: 2.023964e-06	ci right 6.500107e-06	k: 13	n:3420000
GGT1   3420000 perm   4595 sec   (744 perm/sec)   p_kst 3.801170e-06   p_cons 5.847953e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 8.554114e-01	ci left: 3.561671e-06	ci right 9.005344e-06	k: 20	n:3430000
KS ci ratio: 1.047662e+00	ci left: 2.018063e-06	ci right 6.481156e-06	k: 13	n:3430000
GGT1   3430000 perm   4620 sec   (742 perm/sec)   p_kst 3.790087e-06   p_cons 5.830904e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 8.554114e-01	ci left: 3.551317e-06	ci right 8.979165e-06	k: 20	n:3440000
KS ci ratio: 1.047662e+00	ci left: 2.012197e-06	ci right 6.462316e-06	k: 13	n:3440000
GGT1   3440000 perm   4646 sec   (740 perm/sec)   p_kst 3.779070e-06   p_cons 5.813953e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 8.554114e-01	ci left: 3.541024e-06	ci right 8.953139e-06	k: 20	n:3450000
KS ci ratio: 1.047662e+00	ci left: 2.006365e-06	ci right 6.443584e-06	k: 13	n:3450000
GGT1   3450000 perm   4672 sec   (738 perm/sec)   p_kst 3.768116e-06   p_cons 5.797101e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 8.554114e-01	ci left: 3.530789e-06	ci right 8.927263e-06	k: 20	n:3460000
KS ci ratio: 1.047662e+00	ci left: 2.000566e-06	ci right 6.424961e-06	k: 13	n:3460000
GGT1   3460000 perm   4698 sec   (737 perm/sec)   p_kst 3.757225e-06   p_cons 5.780347e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 8.554114e-01	ci left: 3.520614e-06	ci right 8.901536e-06	k: 20	n:3470000
KS ci ratio: 1.047662e+00	ci left: 1.994800e-06	ci right 6.406446e-06	k: 13	n:3470000
GGT1   3470000 perm   4723 sec   (735 perm/sec)   p_kst 3.746398e-06   p_cons 5.763689e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 8.554114e-01	ci left: 3.510498e-06	ci right 8.875957e-06	k: 20	n:3480000
KS ci ratio: 1.047662e+00	ci left: 1.989068e-06	ci right 6.388036e-06	k: 13	n:3480000
GGT1   3480000 perm   4749 sec   (733 perm/sec)   p_kst 3.735632e-06   p_cons 5.747126e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 8.554114e-01	ci left: 3.500439e-06	ci right 8.850524e-06	k: 20	n:3490000
KS ci ratio: 1.047662e+00	ci left: 1.983369e-06	ci right 6.369733e-06	k: 13	n:3490000
GGT1   3490000 perm   4775 sec   (731 perm/sec)   p_kst 3.724928e-06   p_cons 5.730659e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 8.554114e-01	ci left: 3.490438e-06	ci right 8.825237e-06	k: 20	n:3500000
KS ci ratio: 1.047662e+00	ci left: 1.977702e-06	ci right 6.351533e-06	k: 13	n:3500000
GGT1   3500000 perm   4801 sec   (729 perm/sec)   p_kst 3.714286e-06   p_cons 5.714286e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 8.554114e-01	ci left: 3.480493e-06	ci right 8.800094e-06	k: 20	n:3510000
KS ci ratio: 1.047662e+00	ci left: 1.972068e-06	ci right 6.333438e-06	k: 13	n:3510000
GGT1   3510000 perm   4827 sec   (727 perm/sec)   p_kst 3.703704e-06   p_cons 5.698006e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 8.554115e-01	ci left: 3.470605e-06	ci right 8.775094e-06	k: 20	n:3520000
KS ci ratio: 1.047662e+00	ci left: 1.966465e-06	ci right 6.315445e-06	k: 13	n:3520000
GGT1   3520000 perm   4853 sec   (725 perm/sec)   p_kst 3.693182e-06   p_cons 5.681818e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 8.554115e-01	ci left: 3.460774e-06	ci right 8.750235e-06	k: 20	n:3530000
KS ci ratio: 1.047662e+00	ci left: 1.960894e-06	ci right 6.297554e-06	k: 13	n:3530000
GGT1   3530000 perm   4880 sec   (723 perm/sec)   p_kst 3.682720e-06   p_cons 5.665722e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 8.554115e-01	ci left: 3.450998e-06	ci right 8.725517e-06	k: 20	n:3540000
KS ci ratio: 1.047662e+00	ci left: 1.955355e-06	ci right 6.279765e-06	k: 13	n:3540000
GGT1   3540000 perm   4906 sec   (722 perm/sec)   p_kst 3.672316e-06   p_cons 5.649718e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 8.554115e-01	ci left: 3.441276e-06	ci right 8.700938e-06	k: 20	n:3550000
KS ci ratio: 1.047662e+00	ci left: 1.949847e-06	ci right 6.262075e-06	k: 13	n:3550000
GGT1   3550000 perm   4933 sec   (720 perm/sec)   p_kst 3.661972e-06   p_cons 5.633803e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 8.554115e-01	ci left: 3.431610e-06	ci right 8.676497e-06	k: 20	n:3560000
KS ci ratio: 1.047662e+00	ci left: 1.944370e-06	ci right 6.244485e-06	k: 13	n:3560000
GGT1   3560000 perm   4959 sec   (718 perm/sec)   p_kst 3.651685e-06   p_cons 5.617978e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 8.554115e-01	ci left: 3.421998e-06	ci right 8.652193e-06	k: 20	n:3570000
KS ci ratio: 1.047662e+00	ci left: 1.938924e-06	ci right 6.226994e-06	k: 13	n:3570000
GGT1   3570000 perm   4985 sec   (716 perm/sec)   p_kst 3.641457e-06   p_cons 5.602241e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 8.554115e-01	ci left: 3.412439e-06	ci right 8.628025e-06	k: 20	n:3580000
KS ci ratio: 1.047662e+00	ci left: 1.933508e-06	ci right 6.209600e-06	k: 13	n:3580000
GGT1   3580000 perm   5012 sec   (714 perm/sec)   p_kst 3.631285e-06   p_cons 5.586592e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 8.554115e-01	ci left: 3.402933e-06	ci right 8.603992e-06	k: 20	n:3590000
KS ci ratio: 1.047662e+00	ci left: 1.928122e-06	ci right 6.192303e-06	k: 13	n:3590000
GGT1   3590000 perm   5038 sec   (713 perm/sec)   p_kst 3.621170e-06   p_cons 5.571031e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 8.554115e-01	ci left: 3.393481e-06	ci right 8.580092e-06	k: 20	n:3600000
KS ci ratio: 1.047662e+00	ci left: 1.922766e-06	ci right 6.175102e-06	k: 13	n:3600000
GGT1   3600000 perm   5065 sec   (711 perm/sec)   p_kst 3.611111e-06   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 8.554115e-01	ci left: 3.384081e-06	ci right 8.556324e-06	k: 20	n:3610000
KS ci ratio: 1.047662e+00	ci left: 1.917440e-06	ci right 6.157997e-06	k: 13	n:3610000
GGT1   3610000 perm   5092 sec   (709 perm/sec)   p_kst 3.601108e-06   p_cons 5.540166e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 8.554115e-01	ci left: 3.374732e-06	ci right 8.532688e-06	k: 20	n:3620000
KS ci ratio: 1.047662e+00	ci left: 1.912143e-06	ci right 6.140986e-06	k: 13	n:3620000
GGT1   3620000 perm   5119 sec   (707 perm/sec)   p_kst 3.591160e-06   p_cons 5.524862e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 8.554115e-01	ci left: 3.365436e-06	ci right 8.509182e-06	k: 20	n:3630000
KS ci ratio: 1.047662e+00	ci left: 1.906875e-06	ci right 6.124068e-06	k: 13	n:3630000
GGT1   3630000 perm   5145 sec   (705 perm/sec)   p_kst 3.581267e-06   p_cons 5.509642e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 8.554115e-01	ci left: 3.356190e-06	ci right 8.485805e-06	k: 20	n:3640000
KS ci ratio: 1.047662e+00	ci left: 1.901637e-06	ci right 6.107244e-06	k: 13	n:3640000
GGT1   3640000 perm   5172 sec   (704 perm/sec)   p_kst 3.571429e-06   p_cons 5.494505e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 8.554116e-01	ci left: 3.346995e-06	ci right 8.462557e-06	k: 20	n:3650000
KS ci ratio: 1.047662e+00	ci left: 1.896427e-06	ci right 6.090512e-06	k: 13	n:3650000
GGT1   3650000 perm   5200 sec   (702 perm/sec)   p_kst 3.561644e-06   p_cons 5.479452e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 8.554116e-01	ci left: 3.337850e-06	ci right 8.439435e-06	k: 20	n:3660000
KS ci ratio: 1.047662e+00	ci left: 1.891245e-06	ci right 6.073871e-06	k: 13	n:3660000
GGT1   3660000 perm   5227 sec   (700 perm/sec)   p_kst 3.551913e-06   p_cons 5.464481e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 8.554116e-01	ci left: 3.328755e-06	ci right 8.416439e-06	k: 20	n:3670000
KS ci ratio: 1.047662e+00	ci left: 1.886092e-06	ci right 6.057321e-06	k: 13	n:3670000
GGT1   3670000 perm   5254 sec   (698 perm/sec)   p_kst 3.542234e-06   p_cons 5.449591e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 8.554116e-01	ci left: 3.319709e-06	ci right 8.393569e-06	k: 20	n:3680000
KS ci ratio: 1.047662e+00	ci left: 1.880967e-06	ci right 6.040861e-06	k: 13	n:3680000
GGT1   3680000 perm   5282 sec   (697 perm/sec)   p_kst 3.532609e-06   p_cons 5.434783e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 8.554116e-01	ci left: 3.310713e-06	ci right 8.370822e-06	k: 20	n:3690000
KS ci ratio: 1.047662e+00	ci left: 1.875869e-06	ci right 6.024490e-06	k: 13	n:3690000
GGT1   3690000 perm   5313 sec   (694 perm/sec)   p_kst 3.523035e-06   p_cons 5.420054e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 8.554116e-01	ci left: 3.301765e-06	ci right 8.348198e-06	k: 20	n:3700000
KS ci ratio: 1.047662e+00	ci left: 1.870799e-06	ci right 6.008208e-06	k: 13	n:3700000
GGT1   3700000 perm   5341 sec   (693 perm/sec)   p_kst 3.513514e-06   p_cons 5.405405e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 8.554116e-01	ci left: 3.292865e-06	ci right 8.325696e-06	k: 20	n:3710000
KS ci ratio: 1.012137e+00	ci left: 2.063055e-06	ci right 6.331426e-06	k: 14	n:3710000
GGT1   3710000 perm   5373 sec   (691 perm/sec)   p_kst 3.773585e-06   p_cons 5.390836e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 8.554116e-01	ci left: 3.284014e-06	ci right 8.303315e-06	k: 20	n:3720000
KS ci ratio: 1.012137e+00	ci left: 2.057510e-06	ci right 6.314406e-06	k: 14	n:3720000
GGT1   3720000 perm   5404 sec   (688 perm/sec)   p_kst 3.763441e-06   p_cons 5.376344e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 8.554116e-01	ci left: 3.275209e-06	ci right 8.281054e-06	k: 20	n:3730000
KS ci ratio: 1.012137e+00	ci left: 2.051994e-06	ci right 6.297478e-06	k: 14	n:3730000
GGT1   3730000 perm   5434 sec   (686 perm/sec)   p_kst 3.753351e-06   p_cons 5.361930e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 8.554116e-01	ci left: 3.266452e-06	ci right 8.258913e-06	k: 20	n:3740000
KS ci ratio: 1.012137e+00	ci left: 2.046507e-06	ci right 6.280639e-06	k: 14	n:3740000
GGT1   3740000 perm   5462 sec   (685 perm/sec)   p_kst 3.743316e-06   p_cons 5.347594e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 8.554116e-01	ci left: 3.257742e-06	ci right 8.236889e-06	k: 20	n:3750000
KS ci ratio: 1.012137e+00	ci left: 2.041050e-06	ci right 6.263891e-06	k: 14	n:3750000
GGT1   3750000 perm   5492 sec   (683 perm/sec)   p_kst 3.733333e-06   p_cons 5.333333e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 8.554116e-01	ci left: 3.249077e-06	ci right 8.214982e-06	k: 20	n:3760000
KS ci ratio: 9.799978e-01	ci left: 2.232817e-06	ci right 6.579837e-06	k: 15	n:3760000
GGT1   3760000 perm   5520 sec   (681 perm/sec)   p_kst 3.989362e-06   p_cons 5.319149e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 8.554116e-01	ci left: 3.240459e-06	ci right 8.193192e-06	k: 20	n:3770000
KS ci ratio: 9.799978e-01	ci left: 2.226895e-06	ci right 6.562384e-06	k: 15	n:3770000
GGT1   3770000 perm   5548 sec   (680 perm/sec)   p_kst 3.978780e-06   p_cons 5.305040e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 8.554116e-01	ci left: 3.231886e-06	ci right 8.171517e-06	k: 20	n:3780000
KS ci ratio: 9.799978e-01	ci left: 2.221003e-06	ci right 6.545023e-06	k: 15	n:3780000
GGT1   3780000 perm   5576 sec   (678 perm/sec)   p_kst 3.968254e-06   p_cons 5.291005e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 8.554116e-01	ci left: 3.223359e-06	ci right 8.149956e-06	k: 20	n:3790000
KS ci ratio: 9.799978e-01	ci left: 2.215143e-06	ci right 6.527754e-06	k: 15	n:3790000
GGT1   3790000 perm   5603 sec   (676 perm/sec)   p_kst 3.957784e-06   p_cons 5.277045e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 8.554117e-01	ci left: 3.214876e-06	ci right 8.128509e-06	k: 20	n:3800000
KS ci ratio: 9.799978e-01	ci left: 2.209314e-06	ci right 6.510576e-06	k: 15	n:3800000
GGT1   3800000 perm   5631 sec   (675 perm/sec)   p_kst 3.947368e-06   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 8.554117e-01	ci left: 3.206438e-06	ci right 8.107174e-06	k: 20	n:3810000
KS ci ratio: 9.799978e-01	ci left: 2.203515e-06	ci right 6.493487e-06	k: 15	n:3810000
GGT1   3810000 perm   5661 sec   (673 perm/sec)   p_kst 3.937008e-06   p_cons 5.249344e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 8.554117e-01	ci left: 3.198045e-06	ci right 8.085951e-06	k: 20	n:3820000
KS ci ratio: 9.507374e-01	ci left: 2.394081e-06	ci right 6.801823e-06	k: 16	n:3820000
GGT1   3820000 perm   5689 sec   (671 perm/sec)   p_kst 4.188482e-06   p_cons 5.235602e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 8.554117e-01	ci left: 3.189695e-06	ci right 8.064839e-06	k: 20	n:3830000
KS ci ratio: 9.239506e-01	ci left: 2.585675e-06	ci right 7.106687e-06	k: 17	n:3830000
GGT1   3830000 perm   5717 sec   (670 perm/sec)   p_kst 4.438642e-06   p_cons 5.221932e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 8.554117e-01	ci left: 3.181388e-06	ci right 8.043837e-06	k: 20	n:3840000
KS ci ratio: 9.239506e-01	ci left: 2.578941e-06	ci right 7.088180e-06	k: 17	n:3840000
GGT1   3840000 perm   5746 sec   (668 perm/sec)   p_kst 4.427083e-06   p_cons 5.208333e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 8.554117e-01	ci left: 3.173125e-06	ci right 8.022944e-06	k: 20	n:3850000
KS ci ratio: 9.239506e-01	ci left: 2.572243e-06	ci right 7.069769e-06	k: 17	n:3850000
GGT1   3850000 perm   5774 sec   (667 perm/sec)   p_kst 4.415584e-06   p_cons 5.194805e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 8.554117e-01	ci left: 3.164904e-06	ci right 8.002159e-06	k: 20	n:3860000
KS ci ratio: 9.239506e-01	ci left: 2.565579e-06	ci right 7.051454e-06	k: 17	n:3860000
GGT1   3860000 perm   5802 sec   (665 perm/sec)   p_kst 4.404145e-06   p_cons 5.181347e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 8.554117e-01	ci left: 3.156726e-06	ci right 7.981482e-06	k: 20	n:3870000
KS ci ratio: 9.239506e-01	ci left: 2.558949e-06	ci right 7.033233e-06	k: 17	n:3870000
GGT1   3870000 perm   5830 sec   (664 perm/sec)   p_kst 4.392765e-06   p_cons 5.167959e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 8.554117e-01	ci left: 3.148590e-06	ci right 7.960911e-06	k: 20	n:3880000
KS ci ratio: 9.239506e-01	ci left: 2.552354e-06	ci right 7.015106e-06	k: 17	n:3880000
GGT1   3880000 perm   5859 sec   (662 perm/sec)   p_kst 4.381443e-06   p_cons 5.154639e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 8.554117e-01	ci left: 3.140496e-06	ci right 7.940446e-06	k: 20	n:3890000
KS ci ratio: 9.239506e-01	ci left: 2.545793e-06	ci right 6.997072e-06	k: 17	n:3890000
GGT1   3890000 perm   5888 sec   (661 perm/sec)   p_kst 4.370180e-06   p_cons 5.141388e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 8.554117e-01	ci left: 3.132444e-06	ci right 7.920086e-06	k: 20	n:3900000
KS ci ratio: 9.239506e-01	ci left: 2.539265e-06	ci right 6.979131e-06	k: 17	n:3900000
GGT1   3900000 perm   5916 sec   (659 perm/sec)   p_kst 4.358974e-06   p_cons 5.128205e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 8.554117e-01	ci left: 3.124432e-06	ci right 7.899830e-06	k: 20	n:3910000
KS ci ratio: 9.239506e-01	ci left: 2.532771e-06	ci right 6.961282e-06	k: 17	n:3910000
GGT1   3910000 perm   5945 sec   (658 perm/sec)   p_kst 4.347826e-06   p_cons 5.115090e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 8.554117e-01	ci left: 3.116462e-06	ci right 7.879677e-06	k: 20	n:3920000
KS ci ratio: 9.239506e-01	ci left: 2.526310e-06	ci right 6.943523e-06	k: 17	n:3920000
GGT1   3920000 perm   5975 sec   (656 perm/sec)   p_kst 4.336735e-06   p_cons 5.102041e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 8.554117e-01	ci left: 3.108532e-06	ci right 7.859627e-06	k: 20	n:3930000
KS ci ratio: 9.239506e-01	ci left: 2.519881e-06	ci right 6.925855e-06	k: 17	n:3930000
GGT1   3930000 perm   6005 sec   (654 perm/sec)   p_kst 4.325700e-06   p_cons 5.089059e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 8.554117e-01	ci left: 3.100642e-06	ci right 7.839679e-06	k: 20	n:3940000
KS ci ratio: 9.239506e-01	ci left: 2.513486e-06	ci right 6.908277e-06	k: 17	n:3940000
GGT1   3940000 perm   6037 sec   (653 perm/sec)   p_kst 4.314721e-06   p_cons 5.076142e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 8.554117e-01	ci left: 3.092792e-06	ci right 7.819832e-06	k: 20	n:3950000
KS ci ratio: 9.239506e-01	ci left: 2.507123e-06	ci right 6.890788e-06	k: 17	n:3950000
GGT1   3950000 perm   6069 sec   (651 perm/sec)   p_kst 4.303797e-06   p_cons 5.063291e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 8.554118e-01	ci left: 3.084982e-06	ci right 7.800085e-06	k: 20	n:3960000
KS ci ratio: 9.239506e-01	ci left: 2.500791e-06	ci right 6.873387e-06	k: 17	n:3960000
GGT1   3960000 perm   6098 sec   (649 perm/sec)   p_kst 4.292929e-06   p_cons 5.050505e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 8.357444e-01	ci left: 3.274394e-06	ci right 8.085815e-06	k: 21	n:3970000
KS ci ratio: 9.239506e-01	ci left: 2.494492e-06	ci right 6.856073e-06	k: 17	n:3970000
GGT1   3970000 perm   6128 sec   (648 perm/sec)   p_kst 4.282116e-06   p_cons 5.289673e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 8.357444e-01	ci left: 3.266166e-06	ci right 8.065499e-06	k: 21	n:3980000
KS ci ratio: 9.239507e-01	ci left: 2.488225e-06	ci right 6.838847e-06	k: 17	n:3980000
GGT1   3980000 perm   6156 sec   (647 perm/sec)   p_kst 4.271357e-06   p_cons 5.276382e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 8.357444e-01	ci left: 3.257981e-06	ci right 8.045285e-06	k: 21	n:3990000
KS ci ratio: 9.239507e-01	ci left: 2.481988e-06	ci right 6.821707e-06	k: 17	n:3990000
GGT1   3990000 perm   6188 sec   (645 perm/sec)   p_kst 4.260652e-06   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 8.357444e-01	ci left: 3.249836e-06	ci right 8.025172e-06	k: 21	n:4000000
KS ci ratio: 9.239507e-01	ci left: 2.475784e-06	ci right 6.804653e-06	k: 17	n:4000000
GGT1   4000000 perm   6218 sec   (643 perm/sec)   p_kst 4.250000e-06   p_cons 5.250000e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 8.357444e-01	ci left: 3.241731e-06	ci right 8.005159e-06	k: 21	n:4010000
KS ci ratio: 8.993074e-01	ci left: 2.660336e-06	ci right 7.094195e-06	k: 18	n:4010000
GGT1   4010000 perm   6250 sec   (642 perm/sec)   p_kst 4.488778e-06   p_cons 5.236908e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 8.357444e-01	ci left: 3.233667e-06	ci right 7.985245e-06	k: 21	n:4020000
KS ci ratio: 8.993074e-01	ci left: 2.653719e-06	ci right 7.076548e-06	k: 18	n:4020000
GGT1   4020000 perm   6283 sec   (640 perm/sec)   p_kst 4.477612e-06   p_cons 5.223881e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 8.001642e-01	ci left: 3.617876e-06	ci right 8.563584e-06	k: 23	n:4030000
KS ci ratio: 8.993074e-01	ci left: 2.647134e-06	ci right 7.058988e-06	k: 18	n:4030000
GGT1   4030000 perm   6314 sec   (638 perm/sec)   p_kst 4.466501e-06   p_cons 5.707196e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 8.001642e-01	ci left: 3.608921e-06	ci right 8.542387e-06	k: 23	n:4040000
KS ci ratio: 8.993075e-01	ci left: 2.640581e-06	ci right 7.041516e-06	k: 18	n:4040000
GGT1   4040000 perm   6343 sec   (637 perm/sec)   p_kst 4.455446e-06   p_cons 5.693069e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 8.001642e-01	ci left: 3.600010e-06	ci right 8.521295e-06	k: 23	n:4050000
KS ci ratio: 8.993075e-01	ci left: 2.634062e-06	ci right 7.024129e-06	k: 18	n:4050000
GGT1   4050000 perm   6373 sec   (636 perm/sec)   p_kst 4.444444e-06   p_cons 5.679012e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 7.839975e-01	ci left: 3.787504e-06	ci right 8.795578e-06	k: 24	n:4060000
KS ci ratio: 8.993075e-01	ci left: 2.627574e-06	ci right 7.006828e-06	k: 18	n:4060000
GGT1   4060000 perm   6402 sec   (634 perm/sec)   p_kst 4.433498e-06   p_cons 5.911330e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 7.839975e-01	ci left: 3.778198e-06	ci right 8.773967e-06	k: 24	n:4070000
KS ci ratio: 8.993075e-01	ci left: 2.621118e-06	ci right 6.989613e-06	k: 18	n:4070000
GGT1   4070000 perm   6432 sec   (633 perm/sec)   p_kst 4.422604e-06   p_cons 5.896806e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 7.839975e-01	ci left: 3.768938e-06	ci right 8.752462e-06	k: 24	n:4080000
KS ci ratio: 8.993075e-01	ci left: 2.614693e-06	ci right 6.972481e-06	k: 18	n:4080000
GGT1   4080000 perm   6462 sec   (631 perm/sec)   p_kst 4.411765e-06   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 7.839975e-01	ci left: 3.759723e-06	ci right 8.731063e-06	k: 24	n:4090000
KS ci ratio: 8.993075e-01	ci left: 2.608300e-06	ci right 6.955434e-06	k: 18	n:4090000
GGT1   4090000 perm   6493 sec   (630 perm/sec)   p_kst 4.400978e-06   p_cons 5.867971e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 7.839975e-01	ci left: 3.750553e-06	ci right 8.709767e-06	k: 24	n:4100000
KS ci ratio: 8.993075e-01	ci left: 2.601939e-06	ci right 6.938469e-06	k: 18	n:4100000
GGT1   4100000 perm   6523 sec   (629 perm/sec)   p_kst 4.390244e-06   p_cons 5.853659e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 7.839975e-01	ci left: 3.741428e-06	ci right 8.688576e-06	k: 24	n:4110000
KS ci ratio: 8.993075e-01	ci left: 2.595608e-06	ci right 6.921587e-06	k: 18	n:4110000
GGT1   4110000 perm   6554 sec   (627 perm/sec)   p_kst 4.379562e-06   p_cons 5.839416e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 7.839975e-01	ci left: 3.732346e-06	ci right 8.667487e-06	k: 24	n:4120000
KS ci ratio: 8.993075e-01	ci left: 2.589308e-06	ci right 6.904787e-06	k: 18	n:4120000
GGT1   4120000 perm   6583 sec   (626 perm/sec)   p_kst 4.368932e-06   p_cons 5.825243e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 7.839975e-01	ci left: 3.723309e-06	ci right 8.646500e-06	k: 24	n:4130000
KS ci ratio: 8.993075e-01	ci left: 2.583038e-06	ci right 6.888069e-06	k: 18	n:4130000
GGT1   4130000 perm   6614 sec   (624 perm/sec)   p_kst 4.358354e-06   p_cons 5.811138e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 7.839975e-01	ci left: 3.714316e-06	ci right 8.625615e-06	k: 24	n:4140000
KS ci ratio: 8.993075e-01	ci left: 2.576799e-06	ci right 6.871431e-06	k: 18	n:4140000
GGT1   4140000 perm   6644 sec   (623 perm/sec)   p_kst 4.347826e-06   p_cons 5.797101e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 7.839975e-01	ci left: 3.705366e-06	ci right 8.604831e-06	k: 24	n:4150000
KS ci ratio: 8.993075e-01	ci left: 2.570590e-06	ci right 6.854873e-06	k: 18	n:4150000
GGT1   4150000 perm   6675 sec   (622 perm/sec)   p_kst 4.337349e-06   p_cons 5.783133e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 7.687728e-01	ci left: 3.889110e-06	ci right 8.871365e-06	k: 25	n:4160000
KS ci ratio: 8.993075e-01	ci left: 2.564411e-06	ci right 6.838395e-06	k: 18	n:4160000
GGT1   4160000 perm   6705 sec   (620 perm/sec)   p_kst 4.326923e-06   p_cons 6.009615e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 7.687728e-01	ci left: 3.879783e-06	ci right 8.850091e-06	k: 25	n:4170000
KS ci ratio: 8.993075e-01	ci left: 2.558261e-06	ci right 6.821996e-06	k: 18	n:4170000
GGT1   4170000 perm   6736 sec   (619 perm/sec)   p_kst 4.316547e-06   p_cons 5.995204e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 7.687728e-01	ci left: 3.870502e-06	ci right 8.828918e-06	k: 25	n:4180000
KS ci ratio: 8.993075e-01	ci left: 2.552141e-06	ci right 6.805676e-06	k: 18	n:4180000
GGT1   4180000 perm   6769 sec   (618 perm/sec)   p_kst 4.306220e-06   p_cons 5.980861e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 7.687728e-01	ci left: 3.861264e-06	ci right 8.807847e-06	k: 25	n:4190000
KS ci ratio: 8.993075e-01	ci left: 2.546050e-06	ci right 6.789433e-06	k: 18	n:4190000
GGT1   4190000 perm   6803 sec   (616 perm/sec)   p_kst 4.295943e-06   p_cons 5.966587e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 7.687728e-01	ci left: 3.852071e-06	ci right 8.786876e-06	k: 25	n:4200000
KS ci ratio: 8.993075e-01	ci left: 2.539988e-06	ci right 6.773268e-06	k: 18	n:4200000
GGT1   4200000 perm   6834 sec   (615 perm/sec)   p_kst 4.285714e-06   p_cons 5.952381e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 7.687728e-01	ci left: 3.842921e-06	ci right 8.766005e-06	k: 25	n:4210000
KS ci ratio: 8.993075e-01	ci left: 2.533955e-06	ci right 6.757179e-06	k: 18	n:4210000
GGT1   4210000 perm   6864 sec   (613 perm/sec)   p_kst 4.275534e-06   p_cons 5.938242e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 7.687728e-01	ci left: 3.833814e-06	ci right 8.745232e-06	k: 25	n:4220000
KS ci ratio: 8.993075e-01	ci left: 2.527950e-06	ci right 6.741167e-06	k: 18	n:4220000
GGT1   4220000 perm   6895 sec   (612 perm/sec)   p_kst 4.265403e-06   p_cons 5.924171e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 7.687728e-01	ci left: 3.824751e-06	ci right 8.724558e-06	k: 25	n:4230000
KS ci ratio: 8.993076e-01	ci left: 2.521974e-06	ci right 6.725231e-06	k: 18	n:4230000
GGT1   4230000 perm   6927 sec   (611 perm/sec)   p_kst 4.255319e-06   p_cons 5.910165e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 7.687728e-01	ci left: 3.815730e-06	ci right 8.703981e-06	k: 25	n:4240000
KS ci ratio: 8.993076e-01	ci left: 2.516026e-06	ci right 6.709369e-06	k: 18	n:4240000
GGT1   4240000 perm   6958 sec   (609 perm/sec)   p_kst 4.245283e-06   p_cons 5.896226e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 7.687728e-01	ci left: 3.806752e-06	ci right 8.683501e-06	k: 25	n:4250000
KS ci ratio: 8.993076e-01	ci left: 2.510106e-06	ci right 6.693582e-06	k: 18	n:4250000
GGT1   4250000 perm   6988 sec   (608 perm/sec)   p_kst 4.235294e-06   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 7.687728e-01	ci left: 3.797816e-06	ci right 8.663117e-06	k: 25	n:4260000
KS ci ratio: 8.993076e-01	ci left: 2.504213e-06	ci right 6.677870e-06	k: 18	n:4260000
GGT1   4260000 perm   7020 sec   (607 perm/sec)   p_kst 4.225352e-06   p_cons 5.868545e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 7.687728e-01	ci left: 3.788922e-06	ci right 8.642829e-06	k: 25	n:4270000
KS ci ratio: 8.993076e-01	ci left: 2.498349e-06	ci right 6.662231e-06	k: 18	n:4270000
GGT1   4270000 perm   7052 sec   (605 perm/sec)   p_kst 4.215457e-06   p_cons 5.854801e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 7.687728e-01	ci left: 3.780069e-06	ci right 8.622636e-06	k: 25	n:4280000
KS ci ratio: 8.993076e-01	ci left: 2.492511e-06	ci right 6.646665e-06	k: 18	n:4280000
GGT1   4280000 perm   7084 sec   (604 perm/sec)   p_kst 4.205607e-06   p_cons 5.841121e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 7.544019e-01	ci left: 3.958993e-06	ci right 8.880180e-06	k: 26	n:4290000
KS ci ratio: 8.993076e-01	ci left: 2.486701e-06	ci right 6.631171e-06	k: 18	n:4290000
GGT1   4290000 perm   7116 sec   (603 perm/sec)   p_kst 4.195804e-06   p_cons 6.060606e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 7.544019e-01	ci left: 3.949786e-06	ci right 8.859528e-06	k: 26	n:4300000
KS ci ratio: 8.993076e-01	ci left: 2.480918e-06	ci right 6.615750e-06	k: 18	n:4300000
GGT1   4300000 perm   7147 sec   (602 perm/sec)   p_kst 4.186047e-06   p_cons 6.046512e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 7.544019e-01	ci left: 3.940622e-06	ci right 8.838972e-06	k: 26	n:4310000
KS ci ratio: 8.765365e-01	ci left: 2.654118e-06	ci right 6.884180e-06	k: 19	n:4310000
GGT1   4310000 perm   7179 sec   (600 perm/sec)   p_kst 4.408353e-06   p_cons 6.032483e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 7.544019e-01	ci left: 3.931500e-06	ci right 8.818512e-06	k: 26	n:4320000
KS ci ratio: 8.765365e-01	ci left: 2.647975e-06	ci right 6.868245e-06	k: 19	n:4320000
GGT1   4320000 perm   7210 sec   (599 perm/sec)   p_kst 4.398148e-06   p_cons 6.018519e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 7.544019e-01	ci left: 3.922420e-06	ci right 8.798146e-06	k: 26	n:4330000
KS ci ratio: 8.765365e-01	ci left: 2.641859e-06	ci right 6.852383e-06	k: 19	n:4330000
GGT1   4330000 perm   7243 sec   (598 perm/sec)   p_kst 4.387991e-06   p_cons 6.004619e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 7.544019e-01	ci left: 3.913382e-06	ci right 8.777873e-06	k: 26	n:4340000
KS ci ratio: 8.765365e-01	ci left: 2.635772e-06	ci right 6.836594e-06	k: 19	n:4340000
GGT1   4340000 perm   7274 sec   (597 perm/sec)   p_kst 4.377880e-06   p_cons 5.990783e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 7.544019e-01	ci left: 3.904386e-06	ci right 8.757695e-06	k: 26	n:4350000
KS ci ratio: 8.765365e-01	ci left: 2.629713e-06	ci right 6.820878e-06	k: 19	n:4350000
GGT1   4350000 perm   7306 sec   (595 perm/sec)   p_kst 4.367816e-06   p_cons 5.977011e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 7.544019e-01	ci left: 3.895431e-06	ci right 8.737608e-06	k: 26	n:4360000
KS ci ratio: 8.765365e-01	ci left: 2.623681e-06	ci right 6.805233e-06	k: 19	n:4360000
GGT1   4360000 perm   7338 sec   (594 perm/sec)   p_kst 4.357798e-06   p_cons 5.963303e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 7.544019e-01	ci left: 3.886517e-06	ci right 8.717614e-06	k: 26	n:4370000
KS ci ratio: 8.765365e-01	ci left: 2.617677e-06	ci right 6.789661e-06	k: 19	n:4370000
GGT1   4370000 perm   7370 sec   (593 perm/sec)   p_kst 4.347826e-06   p_cons 5.949657e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 7.544019e-01	ci left: 3.877644e-06	ci right 8.697710e-06	k: 26	n:4380000
KS ci ratio: 8.765365e-01	ci left: 2.611701e-06	ci right 6.774159e-06	k: 19	n:4380000
GGT1   4380000 perm   7401 sec   (592 perm/sec)   p_kst 4.337900e-06   p_cons 5.936073e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 7.544019e-01	ci left: 3.868811e-06	ci right 8.677898e-06	k: 26	n:4390000
KS ci ratio: 8.765366e-01	ci left: 2.605752e-06	ci right 6.758728e-06	k: 19	n:4390000
GGT1   4390000 perm   7433 sec   (591 perm/sec)   p_kst 4.328018e-06   p_cons 5.922551e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 7.544020e-01	ci left: 3.860018e-06	ci right 8.658175e-06	k: 26	n:4400000
KS ci ratio: 8.765366e-01	ci left: 2.599829e-06	ci right 6.743368e-06	k: 19	n:4400000
GGT1   4400000 perm   7465 sec   (589 perm/sec)   p_kst 4.318182e-06   p_cons 5.909091e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 7.544020e-01	ci left: 3.851265e-06	ci right 8.638542e-06	k: 26	n:4410000
KS ci ratio: 8.765366e-01	ci left: 2.593934e-06	ci right 6.728077e-06	k: 19	n:4410000
GGT1   4410000 perm   7497 sec   (588 perm/sec)   p_kst 4.308390e-06   p_cons 5.895692e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 7.544020e-01	ci left: 3.842552e-06	ci right 8.618998e-06	k: 26	n:4420000
KS ci ratio: 8.765366e-01	ci left: 2.588066e-06	ci right 6.712855e-06	k: 19	n:4420000
GGT1   4420000 perm   7530 sec   (587 perm/sec)   p_kst 4.298643e-06   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 7.544020e-01	ci left: 3.833878e-06	ci right 8.599542e-06	k: 26	n:4430000
KS ci ratio: 8.765366e-01	ci left: 2.582223e-06	ci right 6.697702e-06	k: 19	n:4430000
GGT1   4430000 perm   7563 sec   (586 perm/sec)   p_kst 4.288939e-06   p_cons 5.869074e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 7.544020e-01	ci left: 3.825243e-06	ci right 8.580174e-06	k: 26	n:4440000
KS ci ratio: 8.765366e-01	ci left: 2.576408e-06	ci right 6.682617e-06	k: 19	n:4440000
GGT1   4440000 perm   7595 sec   (585 perm/sec)   p_kst 4.279279e-06   p_cons 5.855856e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 7.544020e-01	ci left: 3.816647e-06	ci right 8.560893e-06	k: 26	n:4450000
KS ci ratio: 8.765366e-01	ci left: 2.570618e-06	ci right 6.667600e-06	k: 19	n:4450000
GGT1   4450000 perm   7627 sec   (583 perm/sec)   p_kst 4.269663e-06   p_cons 5.842697e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 7.544020e-01	ci left: 3.808089e-06	ci right 8.541698e-06	k: 26	n:4460000
KS ci ratio: 8.765366e-01	ci left: 2.564854e-06	ci right 6.652650e-06	k: 19	n:4460000
GGT1   4460000 perm   7659 sec   (582 perm/sec)   p_kst 4.260090e-06   p_cons 5.829596e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 7.544020e-01	ci left: 3.799570e-06	ci right 8.522589e-06	k: 26	n:4470000
KS ci ratio: 8.765366e-01	ci left: 2.559116e-06	ci right 6.637767e-06	k: 19	n:4470000
GGT1   4470000 perm   7692 sec   (581 perm/sec)   p_kst 4.250559e-06   p_cons 5.816555e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 7.544020e-01	ci left: 3.791089e-06	ci right 8.503565e-06	k: 26	n:4480000
KS ci ratio: 8.765366e-01	ci left: 2.553404e-06	ci right 6.622951e-06	k: 19	n:4480000
GGT1   4480000 perm   7724 sec   (580 perm/sec)   p_kst 4.241071e-06   p_cons 5.803571e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 7.544020e-01	ci left: 3.782646e-06	ci right 8.484626e-06	k: 26	n:4490000
KS ci ratio: 8.765366e-01	ci left: 2.547717e-06	ci right 6.608200e-06	k: 19	n:4490000
GGT1   4490000 perm   7757 sec   (579 perm/sec)   p_kst 4.231626e-06   p_cons 5.790646e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 7.544020e-01	ci left: 3.774240e-06	ci right 8.465772e-06	k: 26	n:4500000
KS ci ratio: 8.765366e-01	ci left: 2.542055e-06	ci right 6.593515e-06	k: 19	n:4500000
GGT1   4500000 perm   7790 sec   (578 perm/sec)   p_kst 4.222222e-06   p_cons 5.777778e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 7.544020e-01	ci left: 3.765871e-06	ci right 8.447001e-06	k: 26	n:4510000
KS ci ratio: 8.765366e-01	ci left: 2.536419e-06	ci right 6.578895e-06	k: 19	n:4510000
GGT1   4510000 perm   7823 sec   (577 perm/sec)   p_kst 4.212860e-06   p_cons 5.764967e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 7.544020e-01	ci left: 3.757539e-06	ci right 8.428313e-06	k: 26	n:4520000
KS ci ratio: 8.765366e-01	ci left: 2.530807e-06	ci right 6.564340e-06	k: 19	n:4520000
GGT1   4520000 perm   7855 sec   (575 perm/sec)   p_kst 4.203540e-06   p_cons 5.752212e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 7.408080e-01	ci left: 3.927856e-06	ci right 8.671861e-06	k: 27	n:4530000
KS ci ratio: 8.765366e-01	ci left: 2.525221e-06	ci right 6.549850e-06	k: 19	n:4530000
GGT1   4530000 perm   7888 sec   (574 perm/sec)   p_kst 4.194260e-06   p_cons 5.960265e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 7.408080e-01	ci left: 3.919204e-06	ci right 8.652760e-06	k: 27	n:4540000
KS ci ratio: 8.765366e-01	ci left: 2.519658e-06	ci right 6.535423e-06	k: 19	n:4540000
GGT1   4540000 perm   7920 sec   (573 perm/sec)   p_kst 4.185022e-06   p_cons 5.947137e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 7.408080e-01	ci left: 3.910590e-06	ci right 8.633743e-06	k: 27	n:4550000
KS ci ratio: 8.765366e-01	ci left: 2.514121e-06	ci right 6.521059e-06	k: 19	n:4550000
GGT1   4550000 perm   7954 sec   (572 perm/sec)   p_kst 4.175824e-06   p_cons 5.934066e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 7.408080e-01	ci left: 3.902015e-06	ci right 8.614809e-06	k: 27	n:4560000
KS ci ratio: 8.765366e-01	ci left: 2.508607e-06	ci right 6.506759e-06	k: 19	n:4560000
GGT1   4560000 perm   7987 sec   (571 perm/sec)   p_kst 4.166667e-06   p_cons 5.921053e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 7.408080e-01	ci left: 3.893476e-06	ci right 8.595958e-06	k: 27	n:4570000
KS ci ratio: 8.765366e-01	ci left: 2.503118e-06	ci right 6.492521e-06	k: 19	n:4570000
GGT1   4570000 perm   8020 sec   (570 perm/sec)   p_kst 4.157549e-06   p_cons 5.908096e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 7.279233e-01	ci left: 4.062405e-06	ci right 8.835751e-06	k: 28	n:4580000
KS ci ratio: 8.765366e-01	ci left: 2.497653e-06	ci right 6.478345e-06	k: 19	n:4580000
GGT1   4580000 perm   8053 sec   (569 perm/sec)   p_kst 4.148472e-06   p_cons 6.113537e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 7.279233e-01	ci left: 4.053554e-06	ci right 8.816501e-06	k: 28	n:4590000
KS ci ratio: 8.765366e-01	ci left: 2.492211e-06	ci right 6.464231e-06	k: 19	n:4590000
GGT1   4590000 perm   8086 sec   (568 perm/sec)   p_kst 4.139434e-06   p_cons 6.100218e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 7.279234e-01	ci left: 4.044742e-06	ci right 8.797335e-06	k: 28	n:4600000
KS ci ratio: 8.765366e-01	ci left: 2.486793e-06	ci right 6.450178e-06	k: 19	n:4600000
GGT1   4600000 perm   8120 sec   (566 perm/sec)   p_kst 4.130435e-06   p_cons 6.086957e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 7.279234e-01	ci left: 4.035968e-06	ci right 8.778252e-06	k: 28	n:4610000
KS ci ratio: 8.765367e-01	ci left: 2.481399e-06	ci right 6.436186e-06	k: 19	n:4610000
GGT1   4610000 perm   8154 sec   (565 perm/sec)   p_kst 4.121475e-06   p_cons 6.073753e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 7.279234e-01	ci left: 4.027232e-06	ci right 8.759251e-06	k: 28	n:4620000
KS ci ratio: 8.765367e-01	ci left: 2.476028e-06	ci right 6.422255e-06	k: 19	n:4620000
GGT1   4620000 perm   8187 sec   (564 perm/sec)   p_kst 4.112554e-06   p_cons 6.060606e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 7.279234e-01	ci left: 4.018534e-06	ci right 8.740333e-06	k: 28	n:4630000
KS ci ratio: 8.765367e-01	ci left: 2.470680e-06	ci right 6.408384e-06	k: 19	n:4630000
GGT1   4630000 perm   8222 sec   (563 perm/sec)   p_kst 4.103672e-06   p_cons 6.047516e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 7.279234e-01	ci left: 4.009874e-06	ci right 8.721496e-06	k: 28	n:4640000
KS ci ratio: 8.765367e-01	ci left: 2.465355e-06	ci right 6.394573e-06	k: 19	n:4640000
GGT1   4640000 perm   8256 sec   (562 perm/sec)   p_kst 4.094828e-06   p_cons 6.034483e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 7.279234e-01	ci left: 4.001250e-06	ci right 8.702740e-06	k: 28	n:4650000
KS ci ratio: 8.765367e-01	ci left: 2.460054e-06	ci right 6.380821e-06	k: 19	n:4650000
GGT1   4650000 perm   8289 sec   (561 perm/sec)   p_kst 4.086022e-06   p_cons 6.021505e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 7.279234e-01	ci left: 3.992664e-06	ci right 8.684065e-06	k: 28	n:4660000
KS ci ratio: 8.765367e-01	ci left: 2.454775e-06	ci right 6.367129e-06	k: 19	n:4660000
GGT1   4660000 perm   8323 sec   (560 perm/sec)   p_kst 4.077253e-06   p_cons 6.008584e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 7.279234e-01	ci left: 3.984114e-06	ci right 8.665469e-06	k: 28	n:4670000
KS ci ratio: 8.765367e-01	ci left: 2.449518e-06	ci right 6.353495e-06	k: 19	n:4670000
GGT1   4670000 perm   8358 sec   (559 perm/sec)   p_kst 4.068522e-06   p_cons 5.995717e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 7.279234e-01	ci left: 3.975601e-06	ci right 8.646953e-06	k: 28	n:4680000
KS ci ratio: 8.765367e-01	ci left: 2.444284e-06	ci right 6.339919e-06	k: 19	n:4680000
GGT1   4680000 perm   8393 sec   (558 perm/sec)   p_kst 4.059829e-06   p_cons 5.982906e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 7.279234e-01	ci left: 3.967124e-06	ci right 8.628516e-06	k: 28	n:4690000
KS ci ratio: 8.765367e-01	ci left: 2.439072e-06	ci right 6.326401e-06	k: 19	n:4690000
GGT1   4690000 perm   8428 sec   (557 perm/sec)   p_kst 4.051173e-06   p_cons 5.970149e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 7.279234e-01	ci left: 3.958684e-06	ci right 8.610158e-06	k: 28	n:4700000
KS ci ratio: 8.765367e-01	ci left: 2.433883e-06	ci right 6.312940e-06	k: 19	n:4700000
GGT1   4700000 perm   8463 sec   (555 perm/sec)   p_kst 4.042553e-06   p_cons 5.957447e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 7.279234e-01	ci left: 3.950279e-06	ci right 8.591877e-06	k: 28	n:4710000
KS ci ratio: 8.765367e-01	ci left: 2.428715e-06	ci right 6.299537e-06	k: 19	n:4710000
GGT1   4710000 perm   8497 sec   (554 perm/sec)   p_kst 4.033970e-06   p_cons 5.944798e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 7.279234e-01	ci left: 3.941910e-06	ci right 8.573674e-06	k: 28	n:4720000
KS ci ratio: 8.765367e-01	ci left: 2.423570e-06	ci right 6.286191e-06	k: 19	n:4720000
GGT1   4720000 perm   8531 sec   (553 perm/sec)   p_kst 4.025424e-06   p_cons 5.932203e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 7.279234e-01	ci left: 3.933576e-06	ci right 8.555548e-06	k: 28	n:4730000
KS ci ratio: 8.765367e-01	ci left: 2.418446e-06	ci right 6.272901e-06	k: 19	n:4730000
GGT1   4730000 perm   8565 sec   (552 perm/sec)   p_kst 4.016913e-06   p_cons 5.919662e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 7.279234e-01	ci left: 3.925277e-06	ci right 8.537498e-06	k: 28	n:4740000
KS ci ratio: 8.765367e-01	ci left: 2.413344e-06	ci right 6.259667e-06	k: 19	n:4740000
GGT1   4740000 perm   8600 sec   (551 perm/sec)   p_kst 4.008439e-06   p_cons 5.907173e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 7.279234e-01	ci left: 3.917013e-06	ci right 8.519525e-06	k: 28	n:4750000
KS ci ratio: 8.765367e-01	ci left: 2.408263e-06	ci right 6.246488e-06	k: 19	n:4750000
GGT1   4750000 perm   8634 sec   (550 perm/sec)   p_kst 4.000000e-06   p_cons 5.894737e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 7.279234e-01	ci left: 3.908784e-06	ci right 8.501627e-06	k: 28	n:4760000
KS ci ratio: 8.765367e-01	ci left: 2.403204e-06	ci right 6.233366e-06	k: 19	n:4760000
GGT1   4760000 perm   8669 sec   (549 perm/sec)   p_kst 3.991597e-06   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 7.279234e-01	ci left: 3.900590e-06	ci right 8.483804e-06	k: 28	n:4770000
KS ci ratio: 8.765367e-01	ci left: 2.398165e-06	ci right 6.220298e-06	k: 19	n:4770000
GGT1   4770000 perm   8703 sec   (548 perm/sec)   p_kst 3.983229e-06   p_cons 5.870021e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 7.279234e-01	ci left: 3.892429e-06	ci right 8.466055e-06	k: 28	n:4780000
KS ci ratio: 8.765367e-01	ci left: 2.393148e-06	ci right 6.207285e-06	k: 19	n:4780000
GGT1   4780000 perm   8738 sec   (547 perm/sec)   p_kst 3.974895e-06   p_cons 5.857741e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 7.279234e-01	ci left: 3.884303e-06	ci right 8.448381e-06	k: 28	n:4790000
KS ci ratio: 8.765367e-01	ci left: 2.388152e-06	ci right 6.194326e-06	k: 19	n:4790000
GGT1   4790000 perm   8773 sec   (546 perm/sec)   p_kst 3.966597e-06   p_cons 5.845511e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 7.279235e-01	ci left: 3.876211e-06	ci right 8.430780e-06	k: 28	n:4800000
KS ci ratio: 8.765367e-01	ci left: 2.383177e-06	ci right 6.181421e-06	k: 19	n:4800000
GGT1   4800000 perm   8808 sec   (545 perm/sec)   p_kst 3.958333e-06   p_cons 5.833333e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 7.279235e-01	ci left: 3.868152e-06	ci right 8.413252e-06	k: 28	n:4810000
KS ci ratio: 8.765367e-01	ci left: 2.378222e-06	ci right 6.168570e-06	k: 19	n:4810000
GGT1   4810000 perm   8842 sec   (544 perm/sec)   p_kst 3.950104e-06   p_cons 5.821206e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 7.279235e-01	ci left: 3.860127e-06	ci right 8.395797e-06	k: 28	n:4820000
KS ci ratio: 8.765367e-01	ci left: 2.373288e-06	ci right 6.155772e-06	k: 19	n:4820000
GGT1   4820000 perm   8877 sec   (543 perm/sec)   p_kst 3.941909e-06   p_cons 5.809129e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 7.279235e-01	ci left: 3.852135e-06	ci right 8.378415e-06	k: 28	n:4830000
KS ci ratio: 8.765367e-01	ci left: 2.368375e-06	ci right 6.143027e-06	k: 19	n:4830000
GGT1   4830000 perm   8913 sec   (542 perm/sec)   p_kst 3.933747e-06   p_cons 5.797101e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 7.279235e-01	ci left: 3.844176e-06	ci right 8.361104e-06	k: 28	n:4840000
KS ci ratio: 8.765367e-01	ci left: 2.363481e-06	ci right 6.130335e-06	k: 19	n:4840000
GGT1   4840000 perm   8948 sec   (541 perm/sec)   p_kst 3.925620e-06   p_cons 5.785124e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 7.279235e-01	ci left: 3.836250e-06	ci right 8.343865e-06	k: 28	n:4850000
KS ci ratio: 8.765367e-01	ci left: 2.358608e-06	ci right 6.117695e-06	k: 19	n:4850000
GGT1   4850000 perm   8982 sec   (540 perm/sec)   p_kst 3.917526e-06   p_cons 5.773196e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 7.279235e-01	ci left: 3.828357e-06	ci right 8.326696e-06	k: 28	n:4860000
KS ci ratio: 8.765368e-01	ci left: 2.353755e-06	ci right 6.105107e-06	k: 19	n:4860000
GGT1   4860000 perm   9017 sec   (539 perm/sec)   p_kst 3.909465e-06   p_cons 5.761317e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 7.156885e-01	ci left: 3.988044e-06	ci right 8.552112e-06	k: 29	n:4870000
KS ci ratio: 8.765368e-01	ci left: 2.348922e-06	ci right 6.092571e-06	k: 19	n:4870000
GGT1   4870000 perm   9052 sec   (538 perm/sec)   p_kst 3.901437e-06   p_cons 5.954825e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 7.156885e-01	ci left: 3.979871e-06	ci right 8.534587e-06	k: 29	n:4880000
KS ci ratio: 8.765368e-01	ci left: 2.344108e-06	ci right 6.080086e-06	k: 19	n:4880000
GGT1   4880000 perm   9087 sec   (537 perm/sec)   p_kst 3.893443e-06   p_cons 5.942623e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 7.156885e-01	ci left: 3.971733e-06	ci right 8.517134e-06	k: 29	n:4890000
KS ci ratio: 8.765368e-01	ci left: 2.339315e-06	ci right 6.067653e-06	k: 19	n:4890000
GGT1   4890000 perm   9124 sec   (536 perm/sec)   p_kst 3.885481e-06   p_cons 5.930470e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 7.156885e-01	ci left: 3.963627e-06	ci right 8.499752e-06	k: 29	n:4900000
KS ci ratio: 8.765368e-01	ci left: 2.334541e-06	ci right 6.055270e-06	k: 19	n:4900000
GGT1   4900000 perm   9158 sec   (535 perm/sec)   p_kst 3.877551e-06   p_cons 5.918367e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 7.156885e-01	ci left: 3.955554e-06	ci right 8.482441e-06	k: 29	n:4910000
KS ci ratio: 8.765368e-01	ci left: 2.329786e-06	ci right 6.042937e-06	k: 19	n:4910000
GGT1   4910000 perm   9194 sec   (534 perm/sec)   p_kst 3.869654e-06   p_cons 5.906314e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 7.156886e-01	ci left: 3.947515e-06	ci right 8.465200e-06	k: 29	n:4920000
KS ci ratio: 8.765368e-01	ci left: 2.325051e-06	ci right 6.030655e-06	k: 19	n:4920000
GGT1   4920000 perm   9229 sec   (533 perm/sec)   p_kst 3.861789e-06   p_cons 5.894309e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 7.156886e-01	ci left: 3.939508e-06	ci right 8.448029e-06	k: 29	n:4930000
KS ci ratio: 8.765368e-01	ci left: 2.320334e-06	ci right 6.018422e-06	k: 19	n:4930000
GGT1   4930000 perm   9265 sec   (532 perm/sec)   p_kst 3.853955e-06   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 7.156886e-01	ci left: 3.931533e-06	ci right 8.430928e-06	k: 29	n:4940000
KS ci ratio: 8.765368e-01	ci left: 2.315637e-06	ci right 6.006239e-06	k: 19	n:4940000
GGT1   4940000 perm   9301 sec   (531 perm/sec)   p_kst 3.846154e-06   p_cons 5.870445e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 7.156886e-01	ci left: 3.923590e-06	ci right 8.413896e-06	k: 29	n:4950000
KS ci ratio: 8.765368e-01	ci left: 2.310959e-06	ci right 5.994105e-06	k: 19	n:4950000
GGT1   4950000 perm   9338 sec   (530 perm/sec)   p_kst 3.838384e-06   p_cons 5.858586e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 7.156886e-01	ci left: 3.915680e-06	ci right 8.396932e-06	k: 29	n:4960000
KS ci ratio: 8.765368e-01	ci left: 2.306300e-06	ci right 5.982020e-06	k: 19	n:4960000
GGT1   4960000 perm   9373 sec   (529 perm/sec)   p_kst 3.830645e-06   p_cons 5.846774e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 7.156886e-01	ci left: 3.907801e-06	ci right 8.380037e-06	k: 29	n:4970000
KS ci ratio: 8.765368e-01	ci left: 2.301660e-06	ci right 5.969984e-06	k: 19	n:4970000
GGT1   4970000 perm   9410 sec   (528 perm/sec)   p_kst 3.822938e-06   p_cons 5.835010e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 7.156886e-01	ci left: 3.899954e-06	ci right 8.363210e-06	k: 29	n:4980000
KS ci ratio: 8.765368e-01	ci left: 2.297038e-06	ci right 5.957996e-06	k: 19	n:4980000
GGT1   4980000 perm   9446 sec   (527 perm/sec)   p_kst 3.815261e-06   p_cons 5.823293e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 7.156886e-01	ci left: 3.892139e-06	ci right 8.346450e-06	k: 29	n:4990000
KS ci ratio: 8.765368e-01	ci left: 2.292435e-06	ci right 5.946056e-06	k: 19	n:4990000
GGT1   4990000 perm   9483 sec   (526 perm/sec)   p_kst 3.807615e-06   p_cons 5.811623e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 7.156886e-01	ci left: 3.884354e-06	ci right 8.329757e-06	k: 29	n:5000000
KS ci ratio: 8.765368e-01	ci left: 2.287850e-06	ci right 5.934164e-06	k: 19	n:5000000
GGT1   5000000 perm   9519 sec   (525 perm/sec)   p_kst 3.800000e-06   p_cons 5.800000e-06   p_joint 0

Outputting figure to mutsig2_images.part000000000070/GGT1.3_1758_5000000_3.8e-06_5.8e-06_0.png
                gene_name: GGT1
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 3.80e-06 
        ci_ks_bounds_left: 2.29e-06 
       ci_ks_bounds_right: 5.93e-06 
                   p_cons: 5.80e-06 
      ci_cons_bounds_left: 3.88e-06 
     ci_cons_bounds_right: 8.33e-06 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 68 percent done.
GH2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.253417e-02	ci left: 9.014466e-01	ci right 9.129149e-01	k: 9073	n:10000
KS ci ratio: 3.502554e-02	ci left: 5.461967e-01	ci right 5.657707e-01	k: 5560	n:10000
GH2   10000 perm   1 sec   (7725 perm/sec)   p_kst 5.560000e-01   p_cons 9.073000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GH2.2_1011_10000_0.556_0.9073_1.png
                gene_name: GH2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
GIF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.094380e-02	ci left: 3.623163e-01	ci right 3.813585e-01	k: 3718	n:10000
KS ci ratio: 8.266728e-03	ci left: 9.533608e-01	ci right 9.613700e-01	k: 9575	n:10000
GIF   10000 perm   1 sec   (7283 perm/sec)   p_kst 9.575000e-01   p_cons 3.718000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GIF.3_1290_10000_0.9575_0.3718_1.png
                gene_name: GIF
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
GIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.712477e-02	ci left: 5.172579e-01	ci right 5.369263e-01	k: 5271	n:10000
Cons ci ratio: 5.604552e-02	ci left: 3.191965e-01	ci right 3.377036e-01	k: 3284	n:10000
KS ci ratio: 4.542018e-02	ci left: 4.170783e-01	ci right 4.365644e-01	k: 4268	n:10000
GIT1   10000 perm   1 sec   (6703 perm/sec)   p_kst 4.268000e-01   p_cons 3.284000e-01   p_joint 5.271000e-01

Outputting figure to mutsig2_images.part000000000070/GIT1.3_2397_10000_0.4268_0.3284_0.5271.png
                gene_name: GIT1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 73 percent done.
GDF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.976591e-02	ci left: 7.892847e-01	ci right 8.051418e-01	k: 7973	n:10000
Cons ci ratio: 1.771079e-02	ci left: 8.230004e-01	ci right 8.378066e-01	k: 8305	n:10000
KS ci ratio: 5.772592e-02	ci left: 3.063966e-01	ci right 3.247110e-01	k: 3155	n:10000
GDF5   10000 perm   1 sec   (7695 perm/sec)   p_kst 3.155000e-01   p_cons 8.305000e-01   p_joint 7.973000e-01

Outputting figure to mutsig2_images.part000000000070/GDF5.2_1514_10000_0.3155_0.8305_0.7973.png
                gene_name: GDF5
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 75 percent done.
GDPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.010154e-02	ci left: 2.297793e-01	ci right 2.465735e-01	k: 2381	n:10000
Cons ci ratio: 9.255073e-02	ci left: 1.450154e-01	ci right 1.591879e-01	k: 1520	n:10000
KS ci ratio: 2.213094e-02	ci left: 7.497846e-01	ci right 7.666647e-01	k: 7583	n:10000
GDPD3   10000 perm   1 sec   (7724 perm/sec)   p_kst 7.583000e-01   p_cons 1.520000e-01   p_joint 2.381000e-01

Outputting figure to mutsig2_images.part000000000070/GDPD3.2_997_10000_0.7583_0.152_0.2381.png
                gene_name: GDPD3
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 77 percent done.
GDPD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.861731e-02	ci left: 6.428726e-01	ci right 6.616387e-01	k: 6523	n:10000
Cons ci ratio: 8.134096e-03	ci left: 9.547186e-01	ci right 9.626113e-01	k: 9588	n:10000
KS ci ratio: 6.623483e-02	ci left: 2.507315e-01	ci right 2.680089e-01	k: 2593	n:10000
GDPD5   10000 perm   1 sec   (7487 perm/sec)   p_kst 2.593000e-01   p_cons 9.588000e-01   p_joint 6.523000e-01

Outputting figure to mutsig2_images.part000000000070/GDPD5.2_1878_10000_0.2593_0.9588_0.6523.png
                gene_name: GDPD5
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 79 percent done.
GEFT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.177165e-02	ci left: 3.548587e-01	ci right 3.738204e-01	k: 3643	n:10000
Cons ci ratio: 8.776711e-02	ci left: 1.589518e-01	ci right 1.736431e-01	k: 1662	n:10000
KS ci ratio: 2.661160e-02	ci left: 6.752890e-01	ci right 6.936034e-01	k: 6845	n:10000
GEFT   10000 perm   1 sec   (7451 perm/sec)   p_kst 6.845000e-01   p_cons 1.662000e-01   p_joint 3.643000e-01

Outputting figure to mutsig2_images.part000000000070/GEFT.2_2025_10000_0.6845_0.1662_0.3643.png
                gene_name: GEFT
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 80 percent done.
GFI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.020829e-01	ci left: 1.219021e-01	ci right 1.351151e-01	k: 1284	n:10000
Cons ci ratio: 6.132066e-02	ci left: 2.811186e-01	ci right 2.990038e-01	k: 2900	n:10000
KS ci ratio: 1.315040e-01	ci left: 7.620996e-02	ci right 8.703524e-02	k: 815	n:10000
GFI1   10000 perm   1 sec   (7595 perm/sec)   p_kst 8.150000e-02   p_cons 2.900000e-01   p_joint 1.284000e-01

Joint ci ratio: 8.217607e-02	ci left: 9.793682e-02	ci right 1.063792e-01	k: 2042	n:20000
Cons ci ratio: 4.232054e-02	ci left: 2.938025e-01	ci right 3.065556e-01	k: 6003	n:20000
KS ci ratio: 9.336355e-02	ci left: 7.720594e-02	ci right 8.481639e-02	k: 1619	n:20000
GFI1   20000 perm   3 sec   (6729 perm/sec)   p_kst 8.095000e-02   p_cons 3.001500e-01   p_joint 1.021000e-01

Outputting figure to mutsig2_images.part000000000070/GFI1.2_1293_20000_0.08095_0.30015_0.1021.png
                gene_name: GFI1
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.11 

Current progress: 82 percent done.
GFOD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.549987e-03	ci left: 9.843657e-01	ci right 9.889443e-01	k: 9868	n:10000
Cons ci ratio: 2.778118e-03	ci left: 9.935271e-01	ci right 9.963728e-01	k: 9951	n:10000
KS ci ratio: 3.006410e-02	ci left: 6.200485e-01	ci right 6.390760e-01	k: 6296	n:10000
GFOD2   10000 perm   1 sec   (7704 perm/sec)   p_kst 6.296000e-01   p_cons 9.951000e-01   p_joint 9.868000e-01

Outputting figure to mutsig2_images.part000000000070/GFOD2.2_1166_10000_0.6296_0.9951_0.9868.png
                gene_name: GFOD2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 84 percent done.
GGCT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.683071e-01	ci left: 9.139894e-03	ci right 1.335208e-02	k: 111	n:10000
Cons ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
KS ci ratio: 4.841319e-02	ci left: 3.862964e-01	ci right 4.055643e-01	k: 3959	n:10000
GGCT   10000 perm   1 sec   (8075 perm/sec)   p_kst 3.959000e-01   p_cons 2.100000e-03   p_joint 1.110000e-02

Joint ci ratio: 1.826955e-01	ci left: 2.044155e-02	ci right 2.459888e-02	k: 449	n:20000
Cons ci ratio: 5.428855e-01	ci left: 1.899214e-03	ci right 3.351433e-03	k: 51	n:20000
KS ci ratio: 3.410813e-02	ci left: 3.909074e-01	ci right 4.045224e-01	k: 7954	n:20000
GGCT   20000 perm   3 sec   (6781 perm/sec)   p_kst 3.977000e-01   p_cons 2.550000e-03   p_joint 2.245000e-02

Joint ci ratio: 1.635002e-01	ci left: 1.726117e-02	ci right 2.036634e-02	k: 563	n:30000
Cons ci ratio: 4.646599e-01	ci left: 1.819386e-03	ci right 2.947120e-03	k: 70	n:30000
KS ci ratio: 2.796082e-02	ci left: 3.902599e-01	ci right 4.013602e-01	k: 11874	n:30000
GGCT   30000 perm   5 sec   (6457 perm/sec)   p_kst 3.958000e-01   p_cons 2.333333e-03   p_joint 1.876667e-02

Joint ci ratio: 2.437331e-01	ci left: 5.642032e-03	ci right 7.230899e-03	k: 256	n:40000
Cons ci ratio: 4.060072e-01	ci left: 1.854515e-03	ci right 2.820011e-03	k: 92	n:40000
KS ci ratio: 2.413562e-02	ci left: 3.925745e-01	ci right 4.021904e-01	k: 15895	n:40000
GGCT   40000 perm   6 sec   (6256 perm/sec)   p_kst 3.973750e-01   p_cons 2.300000e-03   p_joint 6.400000e-03

Joint ci ratio: 2.170689e-01	ci left: 5.776557e-03	ci right 7.201650e-03	k: 323	n:50000
Cons ci ratio: 3.733423e-01	ci left: 1.790338e-03	ci right 2.629137e-03	k: 109	n:50000
KS ci ratio: 2.151021e-02	ci left: 3.948035e-01	ci right 4.034082e-01	k: 19955	n:50000
GGCT   50000 perm   8 sec   (6105 perm/sec)   p_kst 3.991000e-01   p_cons 2.180000e-03   p_joint 6.460000e-03

Joint ci ratio: 1.991381e-01	ci left: 5.777565e-03	ci right 7.070874e-03	k: 384	n:60000
Cons ci ratio: 3.434312e-01	ci left: 1.795318e-03	ci right 2.554126e-03	k: 129	n:60000
KS ci ratio: 1.960890e-02	ci left: 3.958437e-01	ci right 4.036993e-01	k: 23986	n:60000
GGCT   60000 perm   10 sec   (5966 perm/sec)   p_kst 3.997667e-01   p_cons 2.150000e-03   p_joint 6.400000e-03

Joint ci ratio: 2.217869e-01	ci left: 3.950176e-03	ci right 4.948730e-03	k: 310	n:70000
Cons ci ratio: 3.095466e-01	ci left: 1.932402e-03	ci right 2.652707e-03	k: 159	n:70000
KS ci ratio: 1.807879e-02	ci left: 3.981366e-01	ci right 4.054144e-01	k: 28124	n:70000
GGCT   70000 perm   12 sec   (5832 perm/sec)   p_kst 4.017714e-01   p_cons 2.271429e-03   p_joint 4.428571e-03

Joint ci ratio: 2.061355e-01	ci left: 4.036139e-03	ci right 4.975352e-03	k: 359	n:80000
Cons ci ratio: 2.863218e-01	ci left: 2.003173e-03	ci right 2.683722e-03	k: 186	n:80000
KS ci ratio: 1.686676e-02	ci left: 3.996358e-01	ci right 4.064462e-01	k: 32243	n:80000
GGCT   80000 perm   14 sec   (5704 perm/sec)   p_kst 4.030375e-01   p_cons 2.325000e-03   p_joint 4.487500e-03

Joint ci ratio: 1.899220e-01	ci left: 4.263630e-03	ci right 5.168748e-03	k: 423	n:90000
Cons ci ratio: 2.695459e-01	ci left: 2.028699e-03	ci right 2.670717e-03	k: 210	n:90000
KS ci ratio: 1.590819e-02	ci left: 3.996488e-01	ci right 4.060686e-01	k: 36257	n:90000
GGCT   90000 perm   16 sec   (5587 perm/sec)   p_kst 4.028556e-01   p_cons 2.333333e-03   p_joint 4.700000e-03

Joint ci ratio: 1.811660e-01	ci left: 4.237761e-03	ci right 5.091361e-03	k: 465	n:100000
Cons ci ratio: 2.587428e-01	ci left: 1.993910e-03	ci right 2.595541e-03	k: 228	n:100000
KS ci ratio: 1.508044e-02	ci left: 4.001775e-01	ci right 4.062681e-01	k: 40322	n:100000
GGCT   100000 perm   18 sec   (5471 perm/sec)   p_kst 4.032200e-01   p_cons 2.280000e-03   p_joint 4.650000e-03

Joint ci ratio: 1.749081e-01	ci left: 4.147812e-03	ci right 4.951382e-03	k: 499	n:110000
Cons ci ratio: 2.527576e-01	ci left: 1.906225e-03	ci right 2.465996e-03	k: 239	n:110000
KS ci ratio: 1.437627e-02	ci left: 4.003991e-01	ci right 4.062060e-01	k: 44363	n:110000
GGCT   110000 perm   21 sec   (5361 perm/sec)   p_kst 4.033000e-01   p_cons 2.172727e-03   p_joint 4.536364e-03

Joint ci ratio: 1.695757e-01	ci left: 4.057316e-03	ci right 4.816939e-03	k: 531	n:120000
Cons ci ratio: 2.405367e-01	ci left: 1.942841e-03	ci right 2.481669e-03	k: 264	n:120000
KS ci ratio: 1.374734e-02	ci left: 4.011136e-01	ci right 4.066743e-01	k: 48467	n:120000
GGCT   120000 perm   23 sec   (5262 perm/sec)   p_kst 4.038917e-01   p_cons 2.200000e-03   p_joint 4.425000e-03

Joint ci ratio: 1.621245e-01	ci left: 4.113881e-03	ci right 4.846954e-03	k: 581	n:130000
Cons ci ratio: 2.295363e-01	ci left: 1.981624e-03	ci right 2.502516e-03	k: 290	n:130000
KS ci ratio: 1.322259e-02	ci left: 4.006931e-01	ci right 4.060342e-01	k: 52437	n:130000
GGCT   130000 perm   25 sec   (5162 perm/sec)   p_kst 4.033615e-01   p_cons 2.230769e-03   p_joint 4.469231e-03

Joint ci ratio: 1.553296e-01	ci left: 4.176723e-03	ci right 4.886896e-03	k: 633	n:140000
Cons ci ratio: 2.227540e-01	ci left: 1.961367e-03	ci right 2.459610e-03	k: 308	n:140000
KS ci ratio: 1.274608e-02	ci left: 4.006218e-01	ci right 4.057680e-01	k: 56447	n:140000
GGCT   140000 perm   28 sec   (5067 perm/sec)   p_kst 4.031929e-01   p_cons 2.200000e-03   p_joint 4.521429e-03

Joint ci ratio: 1.503170e-01	ci left: 4.173980e-03	ci right 4.858723e-03	k: 676	n:150000
Cons ci ratio: 2.165394e-01	ci left: 1.944006e-03	ci right 2.422230e-03	k: 326	n:150000
KS ci ratio: 1.231116e-02	ci left: 4.008160e-01	ci right 4.057877e-01	k: 60495	n:150000
GGCT   150000 perm   30 sec   (4979 perm/sec)   p_kst 4.033000e-01   p_cons 2.173333e-03   p_joint 4.506667e-03

Joint ci ratio: 1.460662e-01	ci left: 4.153834e-03	ci right 4.814320e-03	k: 716	n:160000
Cons ci ratio: 2.078204e-01	ci left: 1.988215e-03	ci right 2.455117e-03	k: 354	n:160000
KS ci ratio: 1.190817e-02	ci left: 4.013820e-01	ci right 4.061965e-01	k: 64606	n:160000
GGCT   160000 perm   33 sec   (4895 perm/sec)   p_kst 4.037875e-01   p_cons 2.212500e-03   p_joint 4.475000e-03

Joint ci ratio: 1.409463e-01	ci left: 4.210072e-03	ci right 4.854063e-03	k: 769	n:170000
Cons ci ratio: 1.995548e-01	ci left: 2.038739e-03	ci right 2.496147e-03	k: 384	n:170000
KS ci ratio: 1.154979e-02	ci left: 4.015721e-01	ci right 4.062429e-01	k: 68664	n:170000
GGCT   170000 perm   35 sec   (4815 perm/sec)   p_kst 4.039059e-01   p_cons 2.258824e-03   p_joint 4.523529e-03

Joint ci ratio: 1.359154e-01	ci left: 4.287255e-03	ci right 4.917752e-03	k: 827	n:180000
Cons ci ratio: 1.950499e-01	ci left: 2.020534e-03	ci right 2.462409e-03	k: 402	n:180000
KS ci ratio: 1.122116e-02	ci left: 4.017763e-01	ci right 4.063157e-01	k: 72728	n:180000
GGCT   180000 perm   38 sec   (4734 perm/sec)   p_kst 4.040444e-01   p_cons 2.233333e-03   p_joint 4.594444e-03

Joint ci ratio: 1.321385e-01	ci left: 4.305774e-03	ci right 4.920017e-03	k: 875	n:190000
Cons ci ratio: 1.890451e-01	ci left: 2.044456e-03	ci right 2.476218e-03	k: 428	n:190000
KS ci ratio: 1.092981e-02	ci left: 4.014875e-01	ci right 4.059050e-01	k: 76702	n:190000
GGCT   190000 perm   41 sec   (4655 perm/sec)   p_kst 4.036947e-01   p_cons 2.252632e-03   p_joint 4.605263e-03

Joint ci ratio: 1.290817e-01	ci left: 4.293622e-03	ci right 4.890876e-03	k: 917	n:200000
Cons ci ratio: 1.849946e-01	ci left: 2.032785e-03	ci right 2.451851e-03	k: 447	n:200000
KS ci ratio: 1.065550e-02	ci left: 4.014337e-01	ci right 4.057391e-01	k: 80717	n:200000
GGCT   200000 perm   44 sec   (4586 perm/sec)   p_kst 4.035850e-01   p_cons 2.235000e-03   p_joint 4.585000e-03

Joint ci ratio: 1.261617e-01	ci left: 4.287388e-03	ci right 4.869274e-03	k: 960	n:210000
Cons ci ratio: 1.806132e-01	ci left: 2.035954e-03	ci right 2.444646e-03	k: 469	n:210000
KS ci ratio: 1.040198e-02	ci left: 4.013341e-01	ci right 4.055353e-01	k: 84721	n:210000
GGCT   210000 perm   47 sec   (4513 perm/sec)   p_kst 4.034333e-01   p_cons 2.233333e-03   p_joint 4.571429e-03

Joint ci ratio: 1.059666e-01	ci left: 5.854112e-03	ci right 6.513547e-03	k: 1359	n:220000
Cons ci ratio: 1.758143e-01	ci left: 2.056323e-03	ci right 2.456971e-03	k: 495	n:220000
KS ci ratio: 1.017246e-02	ci left: 4.009267e-01	ci right 4.050304e-01	k: 88655	n:220000
GGCT   220000 perm   50 sec   (4443 perm/sec)   p_kst 4.029773e-01   p_cons 2.250000e-03   p_joint 6.177273e-03

Joint ci ratio: 1.022647e-01	ci left: 6.023074e-03	ci right 6.676417e-03	k: 1459	n:230000
Cons ci ratio: 1.713786e-01	ci left: 2.075052e-03	ci right 2.468094e-03	k: 521	n:230000
KS ci ratio: 9.955054e-03	ci left: 4.006730e-01	ci right 4.046860e-01	k: 92616	n:230000
GGCT   230000 perm   53 sec   (4374 perm/sec)   p_kst 4.026783e-01   p_cons 2.265217e-03   p_joint 6.343478e-03

Joint ci ratio: 1.017191e-01	ci left: 5.837050e-03	ci right 6.466633e-03	k: 1475	n:240000
Cons ci ratio: 1.684997e-01	ci left: 2.060400e-03	ci right 2.443446e-03	k: 539	n:240000
KS ci ratio: 9.748982e-03	ci left: 4.005413e-01	ci right 4.044694e-01	k: 96601	n:240000
GGCT   240000 perm   56 sec   (4312 perm/sec)   p_kst 4.025042e-01   p_cons 2.245833e-03   p_joint 6.145833e-03

Joint ci ratio: 9.958251e-02	ci left: 5.853126e-03	ci right 6.470407e-03	k: 1539	n:250000
Cons ci ratio: 1.653164e-01	ci left: 2.058475e-03	ci right 2.433214e-03	k: 560	n:250000
KS ci ratio: 9.548842e-03	ci left: 4.007407e-01	ci right 4.045896e-01	k: 100666	n:250000
GGCT   250000 perm   59 sec   (4249 perm/sec)   p_kst 4.026640e-01   p_cons 2.240000e-03   p_joint 6.156000e-03

Joint ci ratio: 1.034852e-01	ci left: 5.204333e-03	ci right 5.776007e-03	k: 1426	n:260000
Cons ci ratio: 1.614749e-01	ci left: 2.078905e-03	ci right 2.447715e-03	k: 587	n:260000
KS ci ratio: 9.371101e-03	ci left: 4.003836e-01	ci right 4.041571e-01	k: 104590	n:260000
GGCT   260000 perm   62 sec   (4186 perm/sec)   p_kst 4.022692e-01   p_cons 2.257692e-03   p_joint 5.484615e-03

Joint ci ratio: 9.554052e-02	ci left: 5.900145e-03	ci right 6.495714e-03	k: 1672	n:270000
Cons ci ratio: 1.578892e-01	ci left: 2.097914e-03	ci right 2.461050e-03	k: 614	n:270000
KS ci ratio: 9.202495e-03	ci left: 4.000758e-01	ci right 4.037782e-01	k: 108520	n:270000
GGCT   270000 perm   65 sec   (4125 perm/sec)   p_kst 4.019259e-01   p_cons 2.274074e-03   p_joint 6.192593e-03

Joint ci ratio: 9.984402e-02	ci left: 5.201542e-03	ci right 5.751627e-03	k: 1532	n:280000
Cons ci ratio: 1.556295e-01	ci left: 2.084752e-03	ci right 2.439962e-03	k: 632	n:280000
KS ci ratio: 9.040048e-03	ci left: 3.999298e-01	ci right 4.035651e-01	k: 112489	n:280000
GGCT   280000 perm   69 sec   (4068 perm/sec)   p_kst 4.017464e-01   p_cons 2.257143e-03   p_joint 5.471429e-03

Joint ci ratio: 9.296937e-02	ci left: 5.809724e-03	ci right 6.379524e-03	k: 1766	n:290000
Cons ci ratio: 1.538197e-01	ci left: 2.062583e-03	ci right 2.409553e-03	k: 647	n:290000
KS ci ratio: 8.876480e-03	ci left: 4.003044e-01	ci right 4.038769e-01	k: 116606	n:290000
GGCT   290000 perm   72 sec   (4008 perm/sec)   p_kst 4.020897e-01   p_cons 2.231034e-03   p_joint 6.089655e-03

Joint ci ratio: 9.668070e-02	ci left: 5.186416e-03	ci right 5.716540e-03	k: 1634	n:300000
Cons ci ratio: 1.503762e-01	ci left: 2.090027e-03	ci right 2.433035e-03	k: 677	n:300000
KS ci ratio: 8.730246e-03	ci left: 4.001715e-01	ci right 4.036837e-01	k: 120578	n:300000
GGCT   300000 perm   76 sec   (3952 perm/sec)   p_kst 4.019267e-01   p_cons 2.256667e-03   p_joint 5.446667e-03

Joint ci ratio: 9.535003e-02	ci left: 5.163933e-03	ci right 5.684088e-03	k: 1680	n:310000
Cons ci ratio: 1.482068e-01	ci left: 2.084713e-03	ci right 2.421475e-03	k: 697	n:310000
KS ci ratio: 8.589566e-03	ci left: 4.001283e-01	ci right 4.035832e-01	k: 124575	n:310000
GGCT   310000 perm   79 sec   (3900 perm/sec)   p_kst 4.018548e-01   p_cons 2.248387e-03   p_joint 5.419355e-03

Joint ci ratio: 9.361069e-02	ci left: 5.194787e-03	ci right 5.707981e-03	k: 1743	n:320000
Cons ci ratio: 1.456214e-01	ci left: 2.094820e-03	ci right 2.426797e-03	k: 722	n:320000
KS ci ratio: 8.454596e-03	ci left: 4.001382e-01	ci right 4.035386e-01	k: 128588	n:320000
GGCT   320000 perm   83 sec   (3844 perm/sec)   p_kst 4.018375e-01   p_cons 2.256250e-03   p_joint 5.446875e-03

Joint ci ratio: 9.196319e-02	ci left: 5.223852e-03	ci right 5.730346e-03	k: 1806	n:330000
Cons ci ratio: 1.431666e-01	ci left: 2.104362e-03	ci right 2.431750e-03	k: 747	n:330000
KS ci ratio: 8.327421e-03	ci left: 4.000540e-01	ci right 4.034023e-01	k: 132570	n:330000
GGCT   330000 perm   87 sec   (3789 perm/sec)   p_kst 4.017273e-01   p_cons 2.263636e-03   p_joint 5.472727e-03

Joint ci ratio: 9.042402e-02	ci left: 5.248406e-03	ci right 5.748314e-03	k: 1868	n:340000
Cons ci ratio: 1.412908e-01	ci left: 2.099198e-03	ci right 2.421144e-03	k: 767	n:340000
KS ci ratio: 8.205566e-03	ci left: 3.999898e-01	ci right 4.032884e-01	k: 136557	n:340000
GGCT   340000 perm   91 sec   (3733 perm/sec)   p_kst 4.016382e-01   p_cons 2.255882e-03   p_joint 5.494118e-03

Joint ci ratio: 8.945004e-02	ci left: 5.212956e-03	ci right 5.703858e-03	k: 1909	n:350000
Cons ci ratio: 1.398429e-01	ci left: 2.083327e-03	ci right 2.399291e-03	k: 783	n:350000
KS ci ratio: 8.088860e-03	ci left: 3.999325e-01	ci right 4.031834e-01	k: 140545	n:350000
GGCT   350000 perm   95 sec   (3683 perm/sec)   p_kst 4.015571e-01   p_cons 2.237143e-03   p_joint 5.454286e-03

Joint ci ratio: 8.859820e-02	ci left: 5.168636e-03	ci right 5.650489e-03	k: 1946	n:360000
Cons ci ratio: 1.385255e-01	ci left: 2.065671e-03	ci right 2.375762e-03	k: 798	n:360000
KS ci ratio: 7.977826e-03	ci left: 3.998287e-01	ci right 4.030340e-01	k: 144515	n:360000
GGCT   360000 perm   99 sec   (3636 perm/sec)   p_kst 4.014306e-01   p_cons 2.216667e-03   p_joint 5.405556e-03

Joint ci ratio: 8.726312e-02	ci left: 5.187541e-03	ci right 5.663498e-03	k: 2006	n:370000
Cons ci ratio: 1.364904e-01	ci left: 2.072476e-03	ci right 2.378647e-03	k: 822	n:370000
KS ci ratio: 7.867789e-03	ci left: 3.999415e-01	ci right 4.031033e-01	k: 148563	n:370000
GGCT   370000 perm   103 sec   (3592 perm/sec)   p_kst 4.015216e-01   p_cons 2.221622e-03   p_joint 5.421622e-03

Joint ci ratio: 8.632319e-02	ci left: 5.164300e-03	ci right 5.632764e-03	k: 2050	n:380000
Cons ci ratio: 1.356708e-01	ci left: 2.043355e-03	ci right 2.343264e-03	k: 832	n:380000
KS ci ratio: 7.767371e-03	ci left: 3.997278e-01	ci right 4.028474e-01	k: 152489	n:380000
GGCT   380000 perm   107 sec   (3546 perm/sec)   p_kst 4.012868e-01   p_cons 2.189474e-03   p_joint 5.394737e-03

Joint ci ratio: 8.516809e-02	ci left: 5.172394e-03	ci right 5.635001e-03	k: 2106	n:390000
Cons ci ratio: 1.342290e-01	ci left: 2.035556e-03	ci right 2.330893e-03	k: 850	n:390000
KS ci ratio: 7.667588e-03	ci left: 3.997201e-01	ci right 4.027993e-01	k: 156491	n:390000
GGCT   390000 perm   111 sec   (3503 perm/sec)   p_kst 4.012590e-01   p_cons 2.179487e-03   p_joint 5.400000e-03

Joint ci ratio: 8.421488e-02	ci left: 5.160541e-03	ci right 5.616669e-03	k: 2154	n:400000
Cons ci ratio: 1.327557e-01	ci left: 2.030581e-03	ci right 2.321706e-03	k: 869	n:400000
KS ci ratio: 7.570215e-03	ci left: 3.997980e-01	ci right 4.028385e-01	k: 160527	n:400000
GGCT   400000 perm   116 sec   (3462 perm/sec)   p_kst 4.013175e-01   p_cons 2.172500e-03   p_joint 5.385000e-03

Joint ci ratio: 8.293417e-02	ci left: 5.194677e-03	ci right 5.646502e-03	k: 2221	n:410000
Cons ci ratio: 1.309612e-01	ci left: 2.037660e-03	ci right 2.325545e-03	k: 893	n:410000
KS ci ratio: 7.478206e-03	ci left: 3.997601e-01	ci right 4.027632e-01	k: 164517	n:410000
GGCT   410000 perm   120 sec   (3423 perm/sec)   p_kst 4.012610e-01   p_cons 2.178049e-03   p_joint 5.417073e-03

Joint ci ratio: 8.156695e-02	ci left: 5.245899e-03	ci right 5.694299e-03	k: 2296	n:420000
Cons ci ratio: 1.289564e-01	ci left: 2.053645e-03	ci right 2.339007e-03	k: 921	n:420000
KS ci ratio: 7.388740e-03	ci left: 3.997719e-01	ci right 4.027390e-01	k: 168527	n:420000
GGCT   420000 perm   124 sec   (3383 perm/sec)   p_kst 4.012548e-01   p_cons 2.192857e-03   p_joint 5.466667e-03

Joint ci ratio: 8.062482e-02	ci left: 5.246936e-03	ci right 5.690001e-03	k: 2350	n:430000
Cons ci ratio: 1.271079e-01	ci left: 2.066666e-03	ci right 2.349411e-03	k: 948	n:430000
KS ci ratio: 7.300184e-03	ci left: 3.999297e-01	ci right 4.028623e-01	k: 172600	n:430000
GGCT   430000 perm   129 sec   (3346 perm/sec)   p_kst 4.013953e-01   p_cons 2.204651e-03   p_joint 5.465116e-03

Joint ci ratio: 7.958162e-02	ci left: 5.265776e-03	ci right 5.704411e-03	k: 2412	n:440000
Cons ci ratio: 1.254012e-01	ci left: 2.076922e-03	ci right 2.356970e-03	k: 974	n:440000
KS ci ratio: 7.214565e-03	ci left: 4.000920e-01	ci right 4.029911e-01	k: 176678	n:440000
GGCT   440000 perm   133 sec   (3307 perm/sec)   p_kst 4.015409e-01   p_cons 2.213636e-03   p_joint 5.481818e-03

Joint ci ratio: 7.867384e-02	ci left: 5.270741e-03	ci right 5.704553e-03	k: 2468	n:450000
Cons ci ratio: 1.239476e-01	ci left: 2.080285e-03	ci right 2.357297e-03	k: 997	n:450000
KS ci ratio: 7.132879e-03	ci left: 4.001806e-01	ci right 4.030474e-01	k: 180726	n:450000
GGCT   450000 perm   138 sec   (3272 perm/sec)   p_kst 4.016133e-01   p_cons 2.215556e-03   p_joint 5.484444e-03

Joint ci ratio: 7.768822e-02	ci left: 5.290441e-03	ci right 5.720172e-03	k: 2531	n:460000
Cons ci ratio: 1.220651e-01	ci left: 2.100381e-03	ci right 2.375514e-03	k: 1028	n:460000
KS ci ratio: 7.056012e-03	ci left: 4.001221e-01	ci right 4.029574e-01	k: 184708	n:460000
GGCT   460000 perm   142 sec   (3236 perm/sec)   p_kst 4.015391e-01   p_cons 2.234783e-03   p_joint 5.502174e-03

Joint ci ratio: 7.700776e-02	ci left: 5.271769e-03	ci right 5.696065e-03	k: 2576	n:470000
Cons ci ratio: 1.211279e-01	ci left: 2.088698e-03	ci right 2.360050e-03	k: 1044	n:470000
KS ci ratio: 6.982442e-03	ci left: 4.000067e-01	ci right 4.028116e-01	k: 188662	n:470000
GGCT   470000 perm   147 sec   (3200 perm/sec)   p_kst 4.014085e-01   p_cons 2.221277e-03   p_joint 5.480851e-03

Joint ci ratio: 7.622803e-02	ci left: 5.270241e-03	ci right 5.689929e-03	k: 2629	n:480000
Cons ci ratio: 1.199854e-01	ci left: 2.085594e-03	ci right 2.353805e-03	k: 1064	n:480000
KS ci ratio: 6.911396e-03	ci left: 3.998775e-01	ci right 4.026528e-01	k: 192607	n:480000
GGCT   480000 perm   152 sec   (3165 perm/sec)   p_kst 4.012646e-01   p_cons 2.216667e-03   p_joint 5.477083e-03

Joint ci ratio: 7.548566e-02	ci left: 5.266794e-03	ci right 5.681943e-03	k: 2681	n:490000
Cons ci ratio: 1.189846e-01	ci left: 2.078667e-03	ci right 2.343601e-03	k: 1082	n:490000
KS ci ratio: 6.840324e-03	ci left: 3.999047e-01	ci right 4.026516e-01	k: 196626	n:490000
GGCT   490000 perm   157 sec   (3129 perm/sec)   p_kst 4.012776e-01   p_cons 2.208163e-03   p_joint 5.471429e-03

Joint ci ratio: 7.962454e-02	ci left: 4.631862e-03	ci right 5.017910e-03	k: 2411	n:500000
Cons ci ratio: 1.179012e-01	ci left: 2.075908e-03	ci right 2.337913e-03	k: 1102	n:500000
KS ci ratio: 6.771767e-03	ci left: 3.999050e-01	ci right 4.026242e-01	k: 200632	n:500000
GGCT   500000 perm   162 sec   (3094 perm/sec)   p_kst 4.012640e-01   p_cons 2.204000e-03   p_joint 4.822000e-03

Joint ci ratio: 7.317118e-02	ci left: 5.391253e-03	ci right 5.802629e-03	k: 2853	n:510000
Cons ci ratio: 1.168469e-01	ci left: 2.073268e-03	ci right 2.332439e-03	k: 1122	n:510000
KS ci ratio: 6.705860e-03	ci left: 3.998603e-01	ci right 4.025526e-01	k: 204615	n:510000
GGCT   510000 perm   167 sec   (3060 perm/sec)   p_kst 4.012059e-01   p_cons 2.200000e-03   p_joint 5.594118e-03

Joint ci ratio: 7.318804e-02	ci left: 5.285677e-03	ci right 5.689094e-03	k: 2852	n:520000
Cons ci ratio: 1.156177e-01	ci left: 2.078210e-03	ci right 2.335079e-03	k: 1146	n:520000
KS ci ratio: 6.640086e-03	ci left: 3.999443e-01	ci right 4.026107e-01	k: 208664	n:520000
GGCT   520000 perm   172 sec   (3028 perm/sec)   p_kst 4.012769e-01   p_cons 2.203846e-03   p_joint 5.484615e-03

Joint ci ratio: 7.241753e-02	ci left: 5.298948e-03	ci right 5.698940e-03	k: 2913	n:530000
Cons ci ratio: 1.145246e-01	ci left: 2.079313e-03	ci right 2.333725e-03	k: 1168	n:530000
KS ci ratio: 6.580318e-03	ci left: 3.997254e-01	ci right 4.023662e-01	k: 212554	n:530000
GGCT   530000 perm   177 sec   (2997 perm/sec)   p_kst 4.010453e-01   p_cons 2.203774e-03   p_joint 5.496226e-03

Joint ci ratio: 7.063961e-02	ci left: 5.470008e-03	ci right 5.872361e-03	k: 3061	n:540000
Cons ci ratio: 1.129876e-01	ci left: 2.098382e-03	ci right 2.351451e-03	k: 1200	n:540000
KS ci ratio: 6.520850e-03	ci left: 3.996091e-01	ci right 4.022253e-01	k: 216495	n:540000
GGCT   540000 perm   182 sec   (2965 perm/sec)   p_kst 4.009167e-01   p_cons 2.222222e-03   p_joint 5.668519e-03

Joint ci ratio: 7.097031e-02	ci left: 5.320531e-03	ci right 5.713796e-03	k: 3033	n:550000
Cons ci ratio: 1.119667e-01	ci left: 2.099104e-03	ci right 2.349822e-03	k: 1222	n:550000
KS ci ratio: 6.460300e-03	ci left: 3.996953e-01	ci right 4.022876e-01	k: 220545	n:550000
GGCT   550000 perm   187 sec   (2934 perm/sec)   p_kst 4.009909e-01   p_cons 2.221818e-03   p_joint 5.514545e-03

Joint ci ratio: 7.495206e-02	ci left: 4.678477e-03	ci right 5.044531e-03	k: 2721	n:560000
Cons ci ratio: 1.111073e-01	ci left: 2.094602e-03	ci right 2.342736e-03	k: 1241	n:560000
KS ci ratio: 6.403166e-03	ci left: 3.996464e-01	ci right 4.022154e-01	k: 224521	n:560000
GGCT   560000 perm   193 sec   (2902 perm/sec)   p_kst 4.009304e-01   p_cons 2.216071e-03   p_joint 4.858929e-03

Joint ci ratio: 7.431334e-02	ci left: 4.677316e-03	ci right 5.040026e-03	k: 2768	n:570000
Cons ci ratio: 1.099620e-01	ci left: 2.102208e-03	ci right 2.348509e-03	k: 1267	n:570000
KS ci ratio: 6.346988e-03	ci left: 3.996396e-01	ci right 4.021859e-01	k: 228520	n:570000
GGCT   570000 perm   198 sec   (2872 perm/sec)   p_kst 4.009123e-01   p_cons 2.222807e-03   p_joint 4.856140e-03

Joint ci ratio: 6.846253e-02	ci left: 5.428206e-03	ci right 5.814689e-03	k: 3259	n:580000
Cons ci ratio: 1.091476e-01	ci left: 2.097824e-03	ci right 2.341674e-03	k: 1286	n:580000
KS ci ratio: 6.293348e-03	ci left: 3.995505e-01	ci right 4.020746e-01	k: 232471	n:580000
GGCT   580000 perm   204 sec   (2845 perm/sec)   p_kst 4.008121e-01   p_cons 2.217241e-03   p_joint 5.618966e-03

Joint ci ratio: 6.791289e-02	ci left: 5.424500e-03	ci right 5.807497e-03	k: 3312	n:590000
Cons ci ratio: 1.082265e-01	ci left: 2.098542e-03	ci right 2.340286e-03	k: 1308	n:590000
KS ci ratio: 6.240362e-03	ci left: 3.995170e-01	ci right 4.020196e-01	k: 236453	n:590000
GGCT   590000 perm   209 sec   (2817 perm/sec)   p_kst 4.007678e-01   p_cons 2.216949e-03   p_joint 5.613559e-03

Joint ci ratio: 6.733606e-02	ci left: 5.427486e-03	ci right 5.807312e-03	k: 3369	n:600000
Cons ci ratio: 1.072880e-01	ci left: 2.100866e-03	ci right 2.340647e-03	k: 1331	n:600000
KS ci ratio: 6.189895e-03	ci left: 3.993914e-01	ci right 4.018729e-01	k: 240379	n:600000
GGCT   600000 perm   215 sec   (2791 perm/sec)   p_kst 4.006317e-01   p_cons 2.218333e-03   p_joint 5.615000e-03

Joint ci ratio: 6.698037e-02	ci left: 5.396533e-03	ci right 5.772120e-03	k: 3405	n:610000
Cons ci ratio: 1.068487e-01	ci left: 2.083975e-03	ci right 2.320793e-03	k: 1342	n:610000
KS ci ratio: 6.141681e-03	ci left: 3.991881e-01	ci right 4.016489e-01	k: 244255	n:610000
GGCT   610000 perm   221 sec   (2764 perm/sec)   p_kst 4.004180e-01   p_cons 2.200000e-03   p_joint 5.581967e-03

Joint ci ratio: 6.649440e-02	ci left: 5.388791e-03	ci right 5.761013e-03	k: 3455	n:620000
Cons ci ratio: 1.061401e-01	ci left: 2.078621e-03	ci right 2.313166e-03	k: 1360	n:620000
KS ci ratio: 6.093018e-03	ci left: 3.991139e-01	ci right 4.015547e-01	k: 248207	n:620000
GGCT   620000 perm   226 sec   (2739 perm/sec)   p_kst 4.003339e-01   p_cons 2.193548e-03   p_joint 5.572581e-03

Joint ci ratio: 6.592437e-02	ci left: 5.396917e-03	ci right 5.766382e-03	k: 3515	n:630000
Cons ci ratio: 1.051402e-01	ci left: 2.085807e-03	ci right 2.318809e-03	k: 1386	n:630000
KS ci ratio: 6.043655e-03	ci left: 3.991882e-01	ci right 4.016096e-01	k: 252251	n:630000
GGCT   630000 perm   232 sec   (2714 perm/sec)   p_kst 4.003984e-01   p_cons 2.200000e-03   p_joint 5.579365e-03

Joint ci ratio: 6.548858e-02	ci left: 5.384820e-03	ci right 5.750928e-03	k: 3562	n:640000
Cons ci ratio: 1.045395e-01	ci left: 2.077560e-03	ci right 2.308233e-03	k: 1402	n:640000
KS ci ratio: 5.996644e-03	ci left: 3.991664e-01	ci right 4.015688e-01	k: 256235	n:640000
GGCT   640000 perm   238 sec   (2689 perm/sec)   p_kst 4.003672e-01   p_cons 2.190625e-03   p_joint 5.565625e-03

Joint ci ratio: 6.497088e-02	ci left: 5.388239e-03	ci right 5.751574e-03	k: 3619	n:650000
Cons ci ratio: 1.036201e-01	ci left: 2.083058e-03	ci right 2.312184e-03	k: 1427	n:650000
KS ci ratio: 5.949911e-03	ci left: 3.992101e-01	ci right 4.015939e-01	k: 260261	n:650000
GGCT   650000 perm   244 sec   (2666 perm/sec)   p_kst 4.004015e-01   p_cons 2.195385e-03   p_joint 5.567692e-03

Joint ci ratio: 6.466007e-02	ci left: 5.358767e-03	ci right 5.718322e-03	k: 3654	n:660000
Cons ci ratio: 1.031165e-01	ci left: 2.072160e-03	ci right 2.298912e-03	k: 1441	n:660000
KS ci ratio: 5.906659e-03	ci left: 3.990571e-01	ci right 4.014226e-01	k: 264158	n:660000
GGCT   660000 perm   250 sec   (2643 perm/sec)   p_kst 4.002394e-01   p_cons 2.183333e-03   p_joint 5.536364e-03

Joint ci ratio: 6.421383e-02	ci left: 5.353678e-03	ci right 5.710320e-03	k: 3705	n:670000
Cons ci ratio: 1.023388e-01	ci left: 2.073224e-03	ci right 2.298279e-03	k: 1463	n:670000
KS ci ratio: 5.860982e-03	ci left: 3.991832e-01	ci right 4.015311e-01	k: 268239	n:670000
GGCT   670000 perm   256 sec   (2620 perm/sec)   p_kst 4.003567e-01   p_cons 2.183582e-03   p_joint 5.529851e-03

Joint ci ratio: 6.370003e-02	ci left: 5.361772e-03	ci right 5.715990e-03	k: 3765	n:680000
Cons ci ratio: 1.017501e-01	ci left: 2.067097e-03	ci right 2.290119e-03	k: 1480	n:680000
KS ci ratio: 5.817559e-03	ci left: 3.992057e-01	ci right 4.015363e-01	k: 272252	n:680000
GGCT   680000 perm   262 sec   (2597 perm/sec)   p_kst 4.003706e-01   p_cons 2.176471e-03   p_joint 5.536765e-03

Joint ci ratio: 6.326491e-02	ci left: 5.358231e-03	ci right 5.709708e-03	k: 3817	n:690000
Cons ci ratio: 1.009690e-01	ci left: 2.069628e-03	ci right 2.291107e-03	k: 1503	n:690000
KS ci ratio: 5.775104e-03	ci left: 3.992262e-01	ci right 4.015399e-01	k: 276264	n:690000
GGCT   690000 perm   268 sec   (2574 perm/sec)   p_kst 4.003826e-01   p_cons 2.178261e-03   p_joint 5.531884e-03

Joint ci ratio: 6.283043e-02	ci left: 5.356205e-03	ci right 5.705049e-03	k: 3870	n:700000
Cons ci ratio: 1.003704e-01	ci left: 2.065128e-03	ci right 2.284738e-03	k: 1521	n:700000
KS ci ratio: 5.733634e-03	ci left: 3.992404e-01	ci right 4.015375e-01	k: 280272	n:700000
GGCT   700000 perm   274 sec   (2551 perm/sec)   p_kst 4.003886e-01   p_cons 2.172857e-03   p_joint 5.528571e-03

Joint ci ratio: 6.239678e-02	ci left: 5.355631e-03	ci right 5.701943e-03	k: 3924	n:710000
Cons ci ratio: 9.974994e-02	ci left: 2.062133e-03	ci right 2.279989e-03	k: 1540	n:710000
KS ci ratio: 5.693729e-03	ci left: 3.991966e-01	ci right 4.014774e-01	k: 284239	n:710000
GGCT   710000 perm   281 sec   (2527 perm/sec)   p_kst 4.003366e-01   p_cons 2.169014e-03   p_joint 5.526761e-03

Outputting figure to mutsig2_images.part000000000070/GGCT.2_583_710000_0.40034_0.002169_0.0055268.png
                gene_name: GGCT
               theta_stop: 0.100 
                    nperm: 710000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.0022 
      ci_cons_bounds_left: 0.0021 
     ci_cons_bounds_right: 0.0023 
                  p_joint: 0.0055 
     ci_joint_bounds_left: 0.0054 
    ci_joint_bounds_right: 0.0057 

Current progress: 86 percent done.
GGT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.445118e-02	ci left: 8.738790e-01	ci right 8.866985e-01	k: 8804	n:10000
KS ci ratio: 1.317906e-02	ci left: 8.924146e-01	ci right 9.043522e-01	k: 8985	n:10000
GGT5   10000 perm   1 sec   (7049 perm/sec)   p_kst 8.985000e-01   p_cons 8.804000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GGT5.2_1812_10000_0.8985_0.8804_1.png
                gene_name: GGT5
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
GH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.121542e-02	ci left: 9.190441e-01	ci right 9.295071e-01	k: 9244	n:10000
Cons ci ratio: 6.239472e-02	ci left: 2.740864e-01	ci right 2.918402e-01	k: 2829	n:10000
KS ci ratio: 1.802429e-02	ci left: 8.179167e-01	ci right 8.328932e-01	k: 8255	n:10000
GH1   10000 perm   1 sec   (8301 perm/sec)   p_kst 8.255000e-01   p_cons 2.829000e-01   p_joint 9.244000e-01

Outputting figure to mutsig2_images.part000000000070/GH1.2_674_10000_0.8255_0.2829_0.9244.png
                gene_name: GH1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 89 percent done.
GHITM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.388759e-02	ci left: 7.203745e-01	ci right 7.378918e-01	k: 7292	n:10000
KS ci ratio: 1.239972e-02	ci left: 9.032959e-01	ci right 9.146645e-01	k: 9091	n:10000
GHITM   10000 perm   1 sec   (7221 perm/sec)   p_kst 9.091000e-01   p_cons 7.292000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GHITM.2_1070_10000_0.9091_0.7292_1.png
                gene_name: GHITM
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
GHRHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.253245e-02	ci left: 5.823922e-01	ci right 6.017541e-01	k: 5921	n:10000
Cons ci ratio: 5.447022e-02	ci left: 3.318056e-01	ci right 3.504870e-01	k: 3411	n:10000
KS ci ratio: 1.313571e-02	ci left: 8.930299e-01	ci right 9.049365e-01	k: 8991	n:10000
GHRHR   10000 perm   1 sec   (7532 perm/sec)   p_kst 8.991000e-01   p_cons 3.411000e-01   p_joint 5.921000e-01

Outputting figure to mutsig2_images.part000000000070/GHRHR.2_1364_10000_0.8991_0.3411_0.5921.png
                gene_name: GHRHR
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 93 percent done.
GIMAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.014468e-02	ci left: 9.323699e-01	ci right 9.419735e-01	k: 9373	n:10000
KS ci ratio: 4.262781e-02	ci left: 4.482980e-01	ci right 4.679264e-01	k: 4581	n:10000
GIMAP1   10000 perm   1 sec   (7639 perm/sec)   p_kst 4.581000e-01   p_cons 9.373000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000070/GIMAP1.2_929_10000_0.4581_0.9373_1.png
                gene_name: GIMAP1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
GIMAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.537902e-02	ci left: 3.244576e-01	ci right 3.430393e-01	k: 3337	n:10000
Cons ci ratio: 6.003574e-02	ci left: 2.898383e-01	ci right 3.078790e-01	k: 2988	n:10000
KS ci ratio: 3.557503e-02	ci left: 5.384831e-01	ci right 5.580887e-01	k: 5483	n:10000
GIMAP4   10000 perm   1 sec   (7816 perm/sec)   p_kst 5.483000e-01   p_cons 2.988000e-01   p_joint 3.337000e-01

Outputting figure to mutsig2_images.part000000000070/GIMAP4.2_998_10000_0.5483_0.2988_0.3337.png
                gene_name: GIMAP4
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 96 percent done.
GINS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.986367e-02	ci left: 7.876620e-01	ci right 8.035654e-01	k: 7957	n:10000
Cons ci ratio: 2.446874e-02	ci left: 7.106829e-01	ci right 7.283891e-01	k: 7196	n:10000
KS ci ratio: 2.666705e-02	ci left: 6.743823e-01	ci right 6.927107e-01	k: 6836	n:10000
GINS2   10000 perm   1 sec   (8098 perm/sec)   p_kst 6.836000e-01   p_cons 7.196000e-01   p_joint 7.957000e-01

Outputting figure to mutsig2_images.part000000000070/GINS2.2_578_10000_0.6836_0.7196_0.7957.png
                gene_name: GINS2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 98 percent done.
GJA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.991605e-02	ci left: 6.223600e-01	ci right 6.413631e-01	k: 6319	n:10000
Cons ci ratio: 4.758343e-02	ci left: 3.945608e-01	ci right 4.138950e-01	k: 4042	n:10000
KS ci ratio: 3.219017e-02	ci left: 5.875100e-01	ci right 6.068334e-01	k: 5972	n:10000
GJA4   10000 perm   1 sec   (7742 perm/sec)   p_kst 5.972000e-01   p_cons 4.042000e-01   p_joint 6.319000e-01

Outputting figure to mutsig2_images.part000000000070/GJA4.2_1006_10000_0.5972_0.4042_0.6319.png
                gene_name: GJA4
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000070
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 70 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1641>
Subject: Job 9893951: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1641>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000071> was used as the working directory.
Started at Sat Oct  6 00:09:57 2012
Results reported at Sat Oct  6 01:01:45 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000071.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000071.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 71  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000071.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3169.20 sec.
    Max Memory :      3620 MB
    Max Swap   :      6069 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
71
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 71
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 71: processing genes 6312 - 6401
Calculating significance of each gene.
Using projection method.
6312	GJA5	1.727759e-01
6313	GJA8	1.009269e-01
6314	GJA9	1.374314e-01
6315	GJB1	1.824827e-01
6316	GJB2	1
6317	GJB3	6.857124e-02
6318	GJB4	7.965486e-01
6319	GJB5	1
6320	GJB6	1
6321	GJB7	1.140687e-01
6322	GJC1	1.500045e-01
6323	GJC2	8.318192e-01
In gene GJC3 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 848     n = 1	mu =   8.55e-07
6324	GJC3	2.531469e-01
6325	GJD2	5.694142e-01
6326	GJD3	1
6327	GJD4	4.779700e-01
6328	GK	5.801911e-01
6329	GK2	2.561534e-02
6330	GK5	8.406744e-01
6331	GKAP1	2.223806e-01
6332	GKN1	2.076504e-02
6333	GKN2	6.665528e-02
6334	GLA	2.461637e-01
6335	GLB1	7.065187e-01
6336	GLB1L	4.370605e-01
6337	GLB1L2	3.797815e-01
6338	GLB1L3	2.862461e-01
In gene GLCCI1 the following bins exceed PROBCAP:
    COAD-A6-2678	categ 6	N = 1215    n = 1	mu =   2.07e-07
6339	GLCCI1	2.374563e-01
6340	GLCE	4.122104e-01
6341	GLDC	9.139644e-01
6342	GLDN	2.159353e-01
6343	GLE1	5.080749e-01
6344	GLG1	8.193712e-01
6345	GLI1	7.455175e-01
6346	GLI2	8.052317e-01
6347	GLI3	2.655606e-01
In gene GLI4 the following bins exceed PROBCAP:
    COAD-AA-A00K	categ 6	N = 202     n = 1	mu =   5.86e-07
6348	GLI4	4.300242e-01
6349	GLIPR1	4.270478e-01
6350	GLIPR1L1	8.345841e-02
6351	GLIPR1L2	1.605634e-01
6352	GLIPR2	1
6353	GLIS1	3.963382e-01
6354	GLIS2	1
6355	GLIS3	3.543124e-02
6356	GLMN	8.940242e-01
6357	GLO1	1
6358	GLOD4	8.020904e-01
6359	GLOD5	3.273302e-01
6360	GLP1R	3.053436e-02
6361	GLP2R	2.021562e-01
6362	GLRA1	5.945735e-01
6363	GLRA2	3.812544e-01
6364	GLRA3	3.055510e-02
6365	GLRA4	8.161779e-01
6366	GLRB	3.645917e-03
6367	GLRX	3.944935e-01
6368	GLRX2	5.424545e-01
6369	GLRX3	5.761759e-03
6370	GLRX5	1
6371	GLS	1
6372	GLS2	6.846351e-01
6373	GLT1D1	2.376735e-01
6374	GLT25D1	5.753218e-01
6375	GLT25D2	3.924032e-01
6376	GLT6D1	5.781530e-01
6377	GLT8D1	1.649636e-01
6378	GLT8D2	2.610308e-01
6379	GLTP	1
6380	GLTPD1	1
6381	GLTPD2	7.067065e-01
6382	GLTSCR1	4.348377e-01
6383	GLTSCR2	6.593311e-01
6384	GLUD1	7.122389e-01
6385	GLUD2	1.793563e-02
6386	GLUL	2.416942e-01
6387	GLYAT	3.266697e-01
6388	GLYATL1	5.957071e-01
6389	GLYATL2	1.276531e-01
6390	GLYCTK	9.021255e-01
6391	GLYR1	2.773191e-01
6392	GM2A	1.423426e-01
6393	GMCL1	9.163883e-01
6394	GMDS	8.544581e-01
6395	GMEB1	3.802128e-01
6396	GMEB2	6.048094e-01
6397	GMFB	3.090720e-02
6398	GMFG	1.618637e-01
6399	GMIP	9.887549e-01
6400	GML	2.040565e-04
6401	GMNN	5.150079e-01
Done

Running MutSig 2:
Scatter job 71: processing genes 6312 - 6401
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GLI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.641604e-02	ci left: 5.268671e-01	ci right 5.465115e-01	k: 5367	n:10000
Cons ci ratio: 7.010154e-02	ci left: 2.297793e-01	ci right 2.465735e-01	k: 2381	n:10000
KS ci ratio: 1.282976e-02	ci left: 8.973393e-01	ci right 9.090246e-01	k: 9033	n:10000
GLI3   10000 perm   2 sec   (4180 perm/sec)   p_kst 9.033000e-01   p_cons 2.381000e-01   p_joint 5.367000e-01

Outputting figure to mutsig2_images.part000000000071/GLI3.13_4799_10000_0.9033_0.2381_0.5367.png
                gene_name: GLI3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 2 percent done.
GLIS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.069985e-02	ci left: 1.831396e-01	ci right 1.986409e-01	k: 1908	n:10000
Cons ci ratio: 1.046204e-01	ci left: 1.166232e-01	ci right 1.295972e-01	k: 1230	n:10000
KS ci ratio: 7.721745e-02	ci left: 1.969273e-01	ci right 2.128450e-01	k: 2048	n:10000
GLIS3   10000 perm   2 sec   (4447 perm/sec)   p_kst 2.048000e-01   p_cons 1.230000e-01   p_joint 1.908000e-01

Joint ci ratio: 6.449679e-02	ci left: 1.508484e-01	ci right 1.609518e-01	k: 3117	n:20000
Cons ci ratio: 7.291909e-02	ci left: 1.216273e-01	ci right 1.308816e-01	k: 2524	n:20000
KS ci ratio: 5.472764e-02	ci left: 1.985325e-01	ci right 2.097536e-01	k: 4082	n:20000
GLIS3   20000 perm   5 sec   (4037 perm/sec)   p_kst 2.041000e-01   p_cons 1.262000e-01   p_joint 1.558500e-01

Outputting figure to mutsig2_images.part000000000071/GLIS3.11_2833_20000_0.2041_0.1262_0.15585.png
                gene_name: GLIS3
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 3 percent done.
GLRA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.568038e-02	ci left: 8.551867e-01	ci right 8.688017e-01	k: 8621	n:10000
Cons ci ratio: 2.024168e-02	ci left: 7.813762e-01	ci right 7.974549e-01	k: 7895	n:10000
KS ci ratio: 2.917451e-02	ci left: 6.340217e-01	ci right 6.528946e-01	k: 6435	n:10000
GLRA3   10000 perm   2 sec   (5566 perm/sec)   p_kst 6.435000e-01   p_cons 7.895000e-01   p_joint 8.621000e-01

Outputting figure to mutsig2_images.part000000000071/GLRA3.8_1435_10000_0.6435_0.7895_0.8621.png
                gene_name: GLRA3
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 5 percent done.
GLP1R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.280251e-02	ci left: 5.783790e-01	ci right 5.977697e-01	k: 5881	n:10000
Cons ci ratio: 4.054177e-02	ci left: 4.732619e-01	ci right 4.929479e-01	k: 4831	n:10000
KS ci ratio: 5.146020e-02	ci left: 3.576425e-01	ci right 3.766349e-01	k: 3671	n:10000
GLP1R   10000 perm   2 sec   (4940 perm/sec)   p_kst 3.671000e-01   p_cons 4.831000e-01   p_joint 5.881000e-01

Outputting figure to mutsig2_images.part000000000071/GLP1R.7_1444_10000_0.3671_0.4831_0.5881.png
                gene_name: GLP1R
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 7 percent done.
GLRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.345173e-02	ci left: 8.885187e-01	ci right 9.006503e-01	k: 8947	n:10000
Cons ci ratio: 2.368207e-02	ci left: 7.238082e-01	ci right 7.412561e-01	k: 7326	n:10000
KS ci ratio: 3.097963e-02	ci left: 6.058827e-01	ci right 6.250500e-01	k: 6155	n:10000
GLRB   10000 perm   2 sec   (5405 perm/sec)   p_kst 6.155000e-01   p_cons 7.326000e-01   p_joint 8.947000e-01

Outputting figure to mutsig2_images.part000000000071/GLRB.7_1530_10000_0.6155_0.7326_0.8947.png
                gene_name: GLRB
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 8 percent done.
GK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.382843e-02	ci left: 5.633354e-01	ci right 5.828220e-01	k: 5731	n:10000
Cons ci ratio: 4.646584e-02	ci left: 4.060162e-01	ci right 4.254329e-01	k: 4157	n:10000
KS ci ratio: 3.873442e-02	ci left: 4.960503e-01	ci right 5.157462e-01	k: 5059	n:10000
GK2   10000 perm   2 sec   (5280 perm/sec)   p_kst 5.059000e-01   p_cons 4.157000e-01   p_joint 5.731000e-01

Outputting figure to mutsig2_images.part000000000071/GK2.6_1666_10000_0.5059_0.4157_0.5731.png
                gene_name: GK2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 10 percent done.
GLCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.989186e-02	ci left: 3.720645e-01	ci right 3.912045e-01	k: 3816	n:10000
Cons ci ratio: 2.296359e-02	ci left: 7.358313e-01	ci right 7.530260e-01	k: 7445	n:10000
KS ci ratio: 5.757927e-02	ci left: 3.074877e-01	ci right 3.258192e-01	k: 3166	n:10000
GLCE   10000 perm   2 sec   (5109 perm/sec)   p_kst 3.166000e-01   p_cons 7.445000e-01   p_joint 3.816000e-01

Outputting figure to mutsig2_images.part000000000071/GLCE.6_1866_10000_0.3166_0.7445_0.3816.png
                gene_name: GLCE
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 11 percent done.
GLUD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.695096e-02	ci left: 6.697486e-01	ci right 6.881471e-01	k: 6790	n:10000
Cons ci ratio: 2.655002e-02	ci left: 6.762965e-01	ci right 6.945953e-01	k: 6855	n:10000
KS ci ratio: 3.901428e-02	ci left: 4.924508e-01	ci right 5.121478e-01	k: 5023	n:10000
GLUD2   10000 perm   2 sec   (5135 perm/sec)   p_kst 5.023000e-01   p_cons 6.855000e-01   p_joint 6.790000e-01

Outputting figure to mutsig2_images.part000000000071/GLUD2.6_1681_10000_0.5023_0.6855_0.679.png
                gene_name: GLUD2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 13 percent done.
GML
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.330158e-02	ci left: 7.301724e-01	ci right 7.474883e-01	k: 7389	n:10000
Cons ci ratio: 3.535299e-02	ci left: 5.415883e-01	ci right 5.611817e-01	k: 5514	n:10000
KS ci ratio: 3.476387e-02	ci left: 5.499041e-01	ci right 5.694611e-01	k: 5597	n:10000
GML   10000 perm   2 sec   (6032 perm/sec)   p_kst 5.597000e-01   p_cons 5.514000e-01   p_joint 7.389000e-01

Outputting figure to mutsig2_images.part000000000071/GML.6_489_10000_0.5597_0.5514_0.7389.png
                gene_name: GML
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 15 percent done.
GJA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.145448e-02	ci left: 7.611177e-01	ci right 7.777250e-01	k: 7695	n:10000
Cons ci ratio: 3.546746e-02	ci left: 5.399856e-01	ci right 5.595854e-01	k: 5498	n:10000
KS ci ratio: 2.475385e-02	ci left: 7.059398e-01	ci right 7.237349e-01	k: 7149	n:10000
GJA8   10000 perm   2 sec   (5909 perm/sec)   p_kst 7.149000e-01   p_cons 5.498000e-01   p_joint 7.695000e-01

Outputting figure to mutsig2_images.part000000000071/GJA8.5_1306_10000_0.7149_0.5498_0.7695.png
                gene_name: GJA8
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 16 percent done.
GLB1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.630765e-02	ci left: 8.453973e-01	ci right 8.593967e-01	k: 8525	n:10000
Cons ci ratio: 4.164532e-02	ci left: 4.598782e-01	ci right 4.795394e-01	k: 4697	n:10000
KS ci ratio: 2.737222e-02	ci left: 6.629006e-01	ci right 6.813991e-01	k: 6722	n:10000
GLB1L2   10000 perm   2 sec   (4290 perm/sec)   p_kst 6.722000e-01   p_cons 4.697000e-01   p_joint 8.525000e-01

Outputting figure to mutsig2_images.part000000000071/GLB1L2.5_1987_10000_0.6722_0.4697_0.8525.png
                gene_name: GLB1L2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 18 percent done.
GLB1L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.673202e-02	ci left: 5.225625e-01	ci right 5.422186e-01	k: 5324	n:10000
Cons ci ratio: 7.047050e-02	ci left: 2.279029e-01	ci right 2.446510e-01	k: 2362	n:10000
KS ci ratio: 3.132093e-02	ci left: 6.006606e-01	ci right 6.198751e-01	k: 6103	n:10000
GLB1L3   10000 perm   2 sec   (5296 perm/sec)   p_kst 6.103000e-01   p_cons 2.362000e-01   p_joint 5.324000e-01

Outputting figure to mutsig2_images.part000000000071/GLB1L3.5_2042_10000_0.6103_0.2362_0.5324.png
                gene_name: GLB1L3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 20 percent done.
GLP2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.970216e-02	ci left: 3.738555e-01	ci right 3.930125e-01	k: 3834	n:10000
Cons ci ratio: 2.976835e-02	ci left: 6.246718e-01	ci right 6.436500e-01	k: 6342	n:10000
KS ci ratio: 7.304386e-02	ci left: 2.153664e-01	ci right 2.317949e-01	k: 2235	n:10000
GLP2R   10000 perm   2 sec   (5623 perm/sec)   p_kst 2.235000e-01   p_cons 6.342000e-01   p_joint 3.834000e-01

Outputting figure to mutsig2_images.part000000000071/GLP2R.5_1714_10000_0.2235_0.6342_0.3834.png
                gene_name: GLP2R
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 21 percent done.
GLRX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.112378e-02	ci left: 6.036732e-01	ci right 6.228608e-01	k: 6133	n:10000
Cons ci ratio: 6.740994e-02	ci left: 2.441069e-01	ci right 2.612374e-01	k: 2526	n:10000
KS ci ratio: 1.009287e-02	ci left: 9.329910e-01	ci right 9.425521e-01	k: 9379	n:10000
GLRX3   10000 perm   2 sec   (5017 perm/sec)   p_kst 9.379000e-01   p_cons 2.526000e-01   p_joint 6.133000e-01

Outputting figure to mutsig2_images.part000000000071/GLRX3.5_1052_10000_0.9379_0.2526_0.6133.png
                gene_name: GLRX3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 23 percent done.
GLT25D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.700192e-02	ci left: 2.463807e-01	ci right 2.635622e-01	k: 2549	n:10000
Cons ci ratio: 1.327479e-01	ci left: 7.485257e-02	ci right 8.559347e-02	k: 801	n:10000
KS ci ratio: 3.501845e-02	ci left: 5.462969e-01	ci right 5.658704e-01	k: 5561	n:10000
GLT25D2   10000 perm   2 sec   (5573 perm/sec)   p_kst 5.561000e-01   p_cons 8.010000e-02   p_joint 2.549000e-01

Joint ci ratio: 4.068187e-02	ci left: 3.105533e-01	ci right 3.235000e-01	k: 6340	n:20000
Cons ci ratio: 9.483644e-02	ci left: 7.495571e-02	ci right 8.246732e-02	k: 1573	n:20000
KS ci ratio: 2.391686e-02	ci left: 5.663099e-01	ci right 5.800688e-01	k: 11464	n:20000
GLT25D2   20000 perm   4 sec   (5094 perm/sec)   p_kst 5.732000e-01   p_cons 7.865000e-02   p_joint 3.170000e-01

Outputting figure to mutsig2_images.part000000000071/GLT25D2.5_1929_20000_0.5732_0.07865_0.317.png
                gene_name: GLT25D2
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 25 percent done.
GJA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.025994e-02	ci left: 7.810721e-01	ci right 7.971591e-01	k: 7892	n:10000
Cons ci ratio: 4.103189e-02	ci left: 4.672683e-01	ci right 4.869450e-01	k: 4771	n:10000
KS ci ratio: 3.001256e-02	ci left: 6.208524e-01	ci right 6.398716e-01	k: 6304	n:10000
GJA9   10000 perm   2 sec   (5749 perm/sec)   p_kst 6.304000e-01   p_cons 4.771000e-01   p_joint 7.892000e-01

Outputting figure to mutsig2_images.part000000000071/GJA9.4_1552_10000_0.6304_0.4771_0.7892.png
                gene_name: GJA9
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 26 percent done.
GJB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.320071e-02	ci left: 8.921069e-01	ci right 9.040601e-01	k: 8982	n:10000
Cons ci ratio: 3.160472e-02	ci left: 5.963432e-01	ci right 6.155950e-01	k: 6060	n:10000
KS ci ratio: 1.011016e-02	ci left: 9.327839e-01	ci right 9.423592e-01	k: 9377	n:10000
GJB3   10000 perm   2 sec   (6052 perm/sec)   p_kst 9.377000e-01   p_cons 6.060000e-01   p_joint 8.982000e-01

Outputting figure to mutsig2_images.part000000000071/GJB3.4_817_10000_0.9377_0.606_0.8982.png
                gene_name: GJB3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 28 percent done.
GJC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.716754e-02	ci left: 6.662236e-01	ci right 6.846741e-01	k: 6755	n:10000
KS ci ratio: 1.628821e-02	ci left: 8.457031e-01	ci right 8.596908e-01	k: 8528	n:10000
GJC1   10000 perm   2 sec   (6203 perm/sec)   p_kst 8.528000e-01   p_cons 6.755000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GJC1.4_1195_10000_0.8528_0.6755_1.png
                gene_name: GJC1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
GLA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.514628e-02	ci left: 5.444935e-01	ci right 5.640749e-01	k: 5543	n:10000
Cons ci ratio: 3.489098e-02	ci left: 5.481004e-01	ci right 5.676658e-01	k: 5579	n:10000
KS ci ratio: 6.529986e-02	ci left: 2.561716e-01	ci right 2.735656e-01	k: 2648	n:10000
GLA   10000 perm   2 sec   (5723 perm/sec)   p_kst 2.648000e-01   p_cons 5.579000e-01   p_joint 5.543000e-01

Outputting figure to mutsig2_images.part000000000071/GLA.4_1318_10000_0.2648_0.5579_0.5543.png
                gene_name: GLA
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 31 percent done.
GLDN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
Cons ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
KS ci ratio: 1.293583e-01	ci left: 7.863503e-02	ci right 8.960867e-02	k: 840	n:10000
GLDN   10000 perm   2 sec   (5209 perm/sec)   p_kst 8.400000e-02   p_cons 1.000000e-03   p_joint 1.200000e-02

Joint ci ratio: 4.373811e-01	ci left: 3.128462e-03	ci right 4.920482e-03	k: 79	n:20000
Cons ci ratio: 8.760784e-01	ci left: 5.720559e-04	ci right 1.483147e-03	k: 19	n:20000
KS ci ratio: 8.917600e-02	ci left: 8.415788e-02	ci right 9.206234e-02	k: 1761	n:20000
GLDN   20000 perm   4 sec   (4484 perm/sec)   p_kst 8.805000e-02   p_cons 9.500000e-04   p_joint 3.950000e-03

Joint ci ratio: 3.818765e-01	ci left: 2.833370e-03	ci right 4.198905e-03	k: 104	n:30000
Cons ci ratio: 7.998332e-01	ci left: 4.860610e-04	ci right 1.150156e-03	k: 23	n:30000
KS ci ratio: 7.251193e-02	ci left: 8.553884e-02	ci right 9.200772e-02	k: 2662	n:30000
GLDN   30000 perm   7 sec   (4469 perm/sec)   p_kst 8.873333e-02   p_cons 7.666667e-04   p_joint 3.466667e-03

Joint ci ratio: 3.543541e-01	ci left: 2.510680e-03	ci right 3.613423e-03	k: 121	n:40000
Cons ci ratio: 6.719803e-01	ci left: 5.679580e-04	ci right 1.158413e-03	k: 33	n:40000
KS ci ratio: 6.246652e-02	ci left: 8.681846e-02	ci right 9.244128e-02	k: 3584	n:40000
GLDN   40000 perm   9 sec   (4440 perm/sec)   p_kst 8.960000e-02   p_cons 8.250000e-04   p_joint 3.025000e-03

Joint ci ratio: 3.446878e-01	ci left: 2.136179e-03	ci right 3.043112e-03	k: 128	n:50000
Cons ci ratio: 6.356599e-01	ci left: 5.210801e-04	ci right 1.019850e-03	k: 37	n:50000
KS ci ratio: 5.689770e-02	ci left: 8.422781e-02	ci right 8.918029e-02	k: 4334	n:50000
GLDN   50000 perm   11 sec   (4401 perm/sec)   p_kst 8.668000e-02   p_cons 7.400000e-04   p_joint 2.560000e-03

Joint ci ratio: 1.767255e-01	ci left: 7.414259e-03	ci right 8.867254e-03	k: 487	n:60000
Cons ci ratio: 6.119868e-01	ci left: 4.763178e-04	ci right 9.077013e-04	k: 40	n:60000
KS ci ratio: 5.132162e-02	ci left: 8.633785e-02	ci right 9.090204e-02	k: 5316	n:60000
GLDN   60000 perm   14 sec   (4307 perm/sec)   p_kst 8.860000e-02   p_cons 6.666667e-04   p_joint 8.116667e-03

Joint ci ratio: 2.084092e-01	ci left: 4.504494e-03	ci right 5.565744e-03	k: 351	n:70000
Cons ci ratio: 5.145043e-01	ci left: 6.167886e-04	ci right 1.054875e-03	k: 57	n:70000
KS ci ratio: 4.753215e-02	ci left: 8.644832e-02	ci right 9.067157e-02	k: 6198	n:70000
GLDN   70000 perm   16 sec   (4257 perm/sec)   p_kst 8.854286e-02   p_cons 8.142857e-04   p_joint 5.014286e-03

Joint ci ratio: 2.140433e-01	ci left: 3.728168e-03	ci right 4.633370e-03	k: 333	n:80000
Cons ci ratio: 5.017101e-01	ci left: 5.723763e-04	ci right 9.652947e-04	k: 60	n:80000
KS ci ratio: 4.456787e-02	ci left: 8.620647e-02	ci right 9.014845e-02	k: 7053	n:80000
GLDN   80000 perm   19 sec   (4181 perm/sec)   p_kst 8.816250e-02   p_cons 7.500000e-04   p_joint 4.162500e-03

Joint ci ratio: 2.056147e-01	ci left: 3.608671e-03	ci right 4.446017e-03	k: 361	n:90000
Cons ci ratio: 4.751876e-01	ci left: 5.769793e-04	ci right 9.453231e-04	k: 67	n:90000
KS ci ratio: 4.201829e-02	ci left: 8.632200e-02	ci right 9.003793e-02	k: 7935	n:90000
GLDN   90000 perm   23 sec   (3951 perm/sec)   p_kst 8.816667e-02   p_cons 7.444444e-04   p_joint 4.011111e-03

Joint ci ratio: 1.943906e-01	ci left: 3.656293e-03	ci right 4.452897e-03	k: 404	n:100000
Cons ci ratio: 4.436772e-01	ci left: 6.077183e-04	ci right 9.622753e-04	k: 77	n:100000
KS ci ratio: 3.994853e-02	ci left: 8.607275e-02	ci right 8.959120e-02	k: 8782	n:100000
GLDN   100000 perm   26 sec   (3885 perm/sec)   p_kst 8.782000e-02   p_cons 7.700000e-04   p_joint 4.040000e-03

Joint ci ratio: 2.587699e-01	ci left: 1.812623e-03	ci right 2.359617e-03	k: 228	n:110000
Cons ci ratio: 4.327282e-01	ci left: 5.848207e-04	ci right 9.151509e-04	k: 81	n:110000
KS ci ratio: 3.800175e-02	ci left: 8.652146e-02	ci right 8.988211e-02	k: 9701	n:110000
GLDN   110000 perm   29 sec   (3813 perm/sec)   p_kst 8.819091e-02   p_cons 7.363636e-04   p_joint 2.072727e-03

Joint ci ratio: 2.476632e-01	ci left: 1.825471e-03	ci right 2.349059e-03	k: 249	n:120000
Cons ci ratio: 4.250313e-01	ci left: 5.583846e-04	ci right 8.665754e-04	k: 84	n:120000
KS ci ratio: 3.638958e-02	ci left: 8.656823e-02	ci right 8.978504e-02	k: 10580	n:120000
GLDN   120000 perm   32 sec   (3742 perm/sec)   p_kst 8.816667e-02   p_cons 7.000000e-04   p_joint 2.075000e-03

Joint ci ratio: 2.392042e-01	ci left: 1.815066e-03	ci right 2.315254e-03	k: 267	n:130000
Cons ci ratio: 4.107822e-01	ci left: 5.567328e-04	ci right 8.508962e-04	k: 90	n:130000
KS ci ratio: 3.487156e-02	ci left: 8.704537e-02	ci right 9.014224e-02	k: 11516	n:130000
GLDN   130000 perm   36 sec   (3661 perm/sec)   p_kst 8.858462e-02   p_cons 6.923077e-04   p_joint 2.053846e-03

Joint ci ratio: 2.327833e-01	ci left: 1.786224e-03	ci right 2.263349e-03	k: 282	n:140000
Cons ci ratio: 3.978764e-01	ci left: 5.554650e-04	ci right 8.373110e-04	k: 96	n:140000
KS ci ratio: 3.362082e-02	ci left: 8.701720e-02	ci right 8.999987e-02	k: 12390	n:140000
GLDN   140000 perm   39 sec   (3629 perm/sec)   p_kst 8.850000e-02   p_cons 6.857143e-04   p_joint 2.014286e-03

Joint ci ratio: 2.260941e-01	ci left: 1.773962e-03	ci right 2.232297e-03	k: 299	n:150000
Cons ci ratio: 3.842531e-01	ci left: 5.605131e-04	ci right 8.327222e-04	k: 103	n:150000
KS ci ratio: 3.249433e-02	ci left: 8.700114e-02	ci right 8.988146e-02	k: 13265	n:150000
GLDN   150000 perm   42 sec   (3597 perm/sec)   p_kst 8.843333e-02   p_cons 6.866667e-04   p_joint 1.993333e-03

Joint ci ratio: 1.901190e-01	ci left: 2.398068e-03	ci right 2.907720e-03	k: 423	n:160000
Cons ci ratio: 3.686312e-01	ci left: 5.764117e-04	ci right 8.422220e-04	k: 112	n:160000
KS ci ratio: 3.186106e-02	ci left: 8.505255e-02	ci right 8.781246e-02	k: 13828	n:160000
GLDN   160000 perm   45 sec   (3568 perm/sec)   p_kst 8.642500e-02   p_cons 7.000000e-04   p_joint 2.643750e-03

Joint ci ratio: 1.495827e-01	ci left: 3.722489e-03	ci right 4.329911e-03	k: 683	n:170000
Cons ci ratio: 3.562357e-01	ci left: 5.852802e-04	ci right 8.440039e-04	k: 120	n:170000
KS ci ratio: 3.089977e-02	ci left: 8.514451e-02	ci right 8.782255e-02	k: 14701	n:170000
GLDN   170000 perm   48 sec   (3520 perm/sec)   p_kst 8.647647e-02   p_cons 7.058824e-04   p_joint 4.017647e-03

Joint ci ratio: 1.479794e-01	ci left: 3.595898e-03	ci right 4.175816e-03	k: 698	n:180000
Cons ci ratio: 3.477201e-01	ci left: 5.831512e-04	ci right 8.333836e-04	k: 126	n:180000
KS ci ratio: 3.003851e-02	ci left: 8.513356e-02	ci right 8.773533e-02	k: 15557	n:180000
GLDN   180000 perm   52 sec   (3472 perm/sec)   p_kst 8.642778e-02   p_cons 7.000000e-04   p_joint 3.877778e-03

Joint ci ratio: 1.448063e-01	ci left: 3.563817e-03	ci right 4.125172e-03	k: 729	n:190000
Cons ci ratio: 3.397872e-01	ci left: 5.813120e-04	ci right 8.238161e-04	k: 132	n:190000
KS ci ratio: 2.926693e-02	ci left: 8.500968e-02	ci right 8.753980e-02	k: 16391	n:190000
GLDN   190000 perm   55 sec   (3434 perm/sec)   p_kst 8.626842e-02   p_cons 6.947368e-04   p_joint 3.836842e-03

Joint ci ratio: 1.958034e-01	ci left: 1.804195e-03	ci right 2.200462e-03	k: 399	n:200000
Cons ci ratio: 3.243023e-01	ci left: 6.118324e-04	ci right 8.530194e-04	k: 145	n:200000
KS ci ratio: 2.796181e-02	ci left: 8.822257e-02	ci right 9.072935e-02	k: 17894	n:200000
GLDN   200000 perm   60 sec   (3361 perm/sec)   p_kst 8.947000e-02   p_cons 7.250000e-04   p_joint 1.995000e-03

Joint ci ratio: 2.052852e-01	ci left: 1.555434e-03	ci right 1.915686e-03	k: 363	n:210000
Cons ci ratio: 3.167970e-01	ci left: 6.133495e-04	ci right 8.484054e-04	k: 152	n:210000
KS ci ratio: 2.725827e-02	ci left: 8.842907e-02	ci right 9.087751e-02	k: 18826	n:210000
GLDN   210000 perm   63 sec   (3328 perm/sec)   p_kst 8.964762e-02   p_cons 7.238095e-04   p_joint 1.728571e-03

Joint ci ratio: 2.019853e-01	ci left: 1.536495e-03	ci right 1.885934e-03	k: 375	n:220000
Cons ci ratio: 3.059858e-01	ci left: 6.315651e-04	ci right 8.637338e-04	k: 163	n:220000
KS ci ratio: 2.659789e-02	ci left: 8.866270e-02	ci right 9.105721e-02	k: 19768	n:220000
GLDN   220000 perm   67 sec   (3262 perm/sec)   p_kst 8.985455e-02   p_cons 7.409091e-04   p_joint 1.704545e-03

Joint ci ratio: 2.081848e-01	ci left: 1.378938e-03	ci right 1.703397e-03	k: 353	n:230000
Cons ci ratio: 3.014270e-01	ci left: 6.241882e-04	ci right 8.495714e-04	k: 168	n:230000
KS ci ratio: 2.600744e-02	ci left: 8.872537e-02	ci right 9.106759e-02	k: 20675	n:230000
GLDN   230000 perm   71 sec   (3228 perm/sec)   p_kst 8.989130e-02   p_cons 7.304348e-04   p_joint 1.534783e-03

Joint ci ratio: 2.108935e-01	ci left: 1.285943e-03	ci right 1.592966e-03	k: 344	n:240000
Cons ci ratio: 2.937068e-01	ci left: 6.328820e-04	ci right 8.544628e-04	k: 177	n:240000
KS ci ratio: 2.548840e-02	ci left: 8.856794e-02	ci right 9.085865e-02	k: 21530	n:240000
GLDN   240000 perm   75 sec   (3200 perm/sec)   p_kst 8.970833e-02   p_cons 7.375000e-04   p_joint 1.433333e-03

Joint ci ratio: 2.050319e-01	ci left: 1.310342e-03	ci right 1.613405e-03	k: 364	n:250000
Cons ci ratio: 2.873208e-01	ci left: 6.372356e-04	ci right 8.546091e-04	k: 185	n:250000
KS ci ratio: 2.496372e-02	ci left: 8.865423e-02	ci right 9.089929e-02	k: 22443	n:250000
GLDN   250000 perm   80 sec   (3134 perm/sec)   p_kst 8.977200e-02   p_cons 7.400000e-04   p_joint 1.456000e-03

Joint ci ratio: 2.124524e-01	ci left: 1.168806e-03	ci right 1.450192e-03	k: 339	n:260000
Cons ci ratio: 2.813340e-01	ci left: 6.413022e-04	ci right 8.546966e-04	k: 193	n:260000
KS ci ratio: 2.448054e-02	ci left: 8.866548e-02	ci right 9.086675e-02	k: 23338	n:260000
GLDN   260000 perm   84 sec   (3082 perm/sec)   p_kst 8.976154e-02   p_cons 7.423077e-04   p_joint 1.303846e-03

Joint ci ratio: 2.090977e-01	ci left: 1.164107e-03	ci right 1.439370e-03	k: 350	n:270000
Cons ci ratio: 2.736802e-01	ci left: 6.554574e-04	ci right 8.666083e-04	k: 204	n:270000
KS ci ratio: 2.401239e-02	ci left: 8.875733e-02	ci right 9.091816e-02	k: 24255	n:270000
GLDN   270000 perm   88 sec   (3055 perm/sec)   p_kst 8.983333e-02   p_cons 7.555556e-04   p_joint 1.296296e-03

Joint ci ratio: 2.047674e-01	ci left: 1.173328e-03	ci right 1.444306e-03	k: 365	n:280000
Cons ci ratio: 2.653921e-01	ci left: 6.753411e-04	ci right 8.852145e-04	k: 217	n:280000
KS ci ratio: 2.356960e-02	ci left: 8.884653e-02	ci right 9.096911e-02	k: 25173	n:280000
GLDN   280000 perm   92 sec   (3028 perm/sec)   p_kst 8.990357e-02   p_cons 7.750000e-04   p_joint 1.303571e-03

Joint ci ratio: 2.044925e-01	ci left: 1.136137e-03	ci right 1.398131e-03	k: 366	n:290000
Cons ci ratio: 2.606524e-01	ci left: 6.778212e-04	ci right 8.840905e-04	k: 225	n:290000
KS ci ratio: 2.317288e-02	ci left: 8.877214e-02	ci right 9.085676e-02	k: 26045	n:290000
GLDN   290000 perm   97 sec   (3001 perm/sec)   p_kst 8.981034e-02   p_cons 7.758621e-04   p_joint 1.262069e-03

Joint ci ratio: 2.014956e-01	ci left: 1.133069e-03	ci right 1.390054e-03	k: 377	n:300000
Cons ci ratio: 2.583776e-01	ci left: 6.676927e-04	ci right 8.688203e-04	k: 229	n:300000
KS ci ratio: 2.278392e-02	ci left: 8.878589e-02	ci right 9.083538e-02	k: 26942	n:300000
GLDN   300000 perm   101 sec   (2973 perm/sec)   p_kst 8.980667e-02   p_cons 7.633333e-04   p_joint 1.256667e-03

Joint ci ratio: 1.455152e-01	ci left: 2.165508e-03	ci right 2.508417e-03	k: 723	n:310000
Cons ci ratio: 2.534655e-01	ci left: 6.733248e-04	ci right 8.716839e-04	k: 238	n:310000
KS ci ratio: 2.264888e-02	ci left: 8.711731e-02	ci right 8.911620e-02	k: 27315	n:310000
GLDN   310000 perm   105 sec   (2942 perm/sec)   p_kst 8.811290e-02   p_cons 7.677419e-04   p_joint 2.332258e-03

Joint ci ratio: 1.422119e-01	ci left: 2.200265e-03	ci right 2.540097e-03	k: 757	n:320000
Cons ci ratio: 2.478253e-01	ci left: 6.844999e-04	ci right 8.809727e-04	k: 249	n:320000
KS ci ratio: 2.226844e-02	ci left: 8.730356e-02	ci right 8.927265e-02	k: 28251	n:320000
GLDN   320000 perm   110 sec   (2902 perm/sec)   p_kst 8.828437e-02   p_cons 7.781250e-04   p_joint 2.365625e-03

Joint ci ratio: 1.398334e-01	ci left: 2.209599e-03	ci right 2.544690e-03	k: 783	n:330000
Cons ci ratio: 2.444273e-01	ci left: 6.836614e-04	ci right 8.767944e-04	k: 256	n:330000
KS ci ratio: 2.193253e-02	ci left: 8.728882e-02	ci right 8.922750e-02	k: 29124	n:330000
GLDN   330000 perm   115 sec   (2870 perm/sec)   p_kst 8.825455e-02   p_cons 7.757576e-04   p_joint 2.372727e-03

Joint ci ratio: 1.383429e-01	ci left: 2.192870e-03	ci right 2.521586e-03	k: 800	n:340000
Cons ci ratio: 2.411653e-01	ci left: 6.828894e-04	ci right 8.728448e-04	k: 263	n:340000
KS ci ratio: 2.161057e-02	ci left: 8.728102e-02	ci right 8.919071e-02	k: 29999	n:340000
GLDN   340000 perm   120 sec   (2833 perm/sec)   p_kst 8.823235e-02   p_cons 7.735294e-04   p_joint 2.352941e-03

Joint ci ratio: 1.412953e-01	ci left: 2.039217e-03	ci right 2.351974e-03	k: 767	n:350000
Cons ci ratio: 2.358629e-01	ci left: 6.956159e-04	ci right 8.842362e-04	k: 275	n:350000
KS ci ratio: 2.131755e-02	ci left: 8.716012e-02	ci right 8.904099e-02	k: 30834	n:350000
GLDN   350000 perm   125 sec   (2808 perm/sec)   p_kst 8.809714e-02   p_cons 7.857143e-04   p_joint 2.191429e-03

Joint ci ratio: 1.406587e-01	ci left: 2.001328e-03	ci right 2.306774e-03	k: 774	n:360000
Cons ci ratio: 2.329279e-01	ci left: 6.945958e-04	ci right 8.802584e-04	k: 282	n:360000
KS ci ratio: 2.102266e-02	ci left: 8.714840e-02	ci right 8.900269e-02	k: 31706	n:360000
GLDN   360000 perm   129 sec   (2783 perm/sec)   p_kst 8.807222e-02   p_cons 7.833333e-04   p_joint 2.150000e-03

Joint ci ratio: 1.486613e-01	ci left: 1.736219e-03	ci right 2.017620e-03	k: 693	n:370000
Cons ci ratio: 2.293098e-01	ci left: 6.987392e-04	ci right 8.821976e-04	k: 291	n:370000
KS ci ratio: 2.075085e-02	ci left: 8.705140e-02	ci right 8.887939e-02	k: 32546	n:370000
GLDN   370000 perm   134 sec   (2758 perm/sec)   p_kst 8.796216e-02   p_cons 7.864865e-04   p_joint 1.872973e-03

Joint ci ratio: 1.480254e-01	ci left: 1.705730e-03	ci right 1.980903e-03	k: 699	n:380000
Cons ci ratio: 2.254807e-01	ci left: 7.051685e-04	ci right 8.867937e-04	k: 301	n:380000
KS ci ratio: 2.048797e-02	ci left: 8.697013e-02	ci right 8.877300e-02	k: 33390	n:380000
GLDN   380000 perm   139 sec   (2733 perm/sec)   p_kst 8.786842e-02   p_cons 7.921053e-04   p_joint 1.839474e-03

Joint ci ratio: 1.468772e-01	ci left: 1.689157e-03	ci right 1.959357e-03	k: 710	n:390000
Cons ci ratio: 2.240033e-01	ci left: 6.967659e-04	ci right 8.748888e-04	k: 305	n:390000
KS ci ratio: 2.021284e-02	ci left: 8.706673e-02	ci right 8.884709e-02	k: 34302	n:390000
GLDN   390000 perm   144 sec   (2708 perm/sec)   p_kst 8.795385e-02   p_cons 7.820513e-04   p_joint 1.820513e-03

Joint ci ratio: 1.463659e-01	ci left: 1.658967e-03	ci right 1.923333e-03	k: 715	n:400000
Cons ci ratio: 2.221961e-01	ci left: 6.911480e-04	ci right 8.662143e-04	k: 310	n:400000
KS ci ratio: 1.995223e-02	ci left: 8.712879e-02	ci right 8.888718e-02	k: 35202	n:400000
GLDN   400000 perm   149 sec   (2683 perm/sec)   p_kst 8.800500e-02   p_cons 7.750000e-04   p_joint 1.787500e-03

Joint ci ratio: 1.443632e-01	ci left: 1.665511e-03	ci right 1.926976e-03	k: 735	n:410000
Cons ci ratio: 2.200837e-01	ci left: 6.881142e-04	ci right 8.605307e-04	k: 316	n:410000
KS ci ratio: 1.969397e-02	ci left: 8.724867e-02	ci right 8.898643e-02	k: 36127	n:410000
GLDN   410000 perm   154 sec   (2657 perm/sec)   p_kst 8.811463e-02   p_cons 7.707317e-04   p_joint 1.792683e-03

Joint ci ratio: 1.431057e-01	ci left: 1.655695e-03	ci right 1.913161e-03	k: 748	n:420000
Cons ci ratio: 2.173581e-01	ci left: 6.897348e-04	ci right 8.601313e-04	k: 324	n:420000
KS ci ratio: 1.944663e-02	ci left: 8.735349e-02	ci right 8.907124e-02	k: 37048	n:420000
GLDN   420000 perm   159 sec   (2635 perm/sec)   p_kst 8.820952e-02   p_cons 7.714286e-04   p_joint 1.780952e-03

Joint ci ratio: 1.224739e-01	ci left: 2.231147e-03	ci right 2.524460e-03	k: 1021	n:430000
Cons ci ratio: 2.157058e-01	ci left: 6.846916e-04	ci right 8.523860e-04	k: 329	n:430000
KS ci ratio: 1.921838e-02	ci left: 8.737021e-02	ci right 8.906790e-02	k: 37933	n:430000
GLDN   430000 perm   165 sec   (2609 perm/sec)   p_kst 8.821628e-02   p_cons 7.651163e-04   p_joint 2.374419e-03

Joint ci ratio: 1.208870e-01	ci left: 2.239936e-03	ci right 2.530315e-03	k: 1048	n:440000
Cons ci ratio: 2.125095e-01	ci left: 6.906393e-04	ci right 8.569574e-04	k: 339	n:440000
KS ci ratio: 1.900872e-02	ci left: 8.729576e-02	ci right 8.897330e-02	k: 38778	n:440000
GLDN   440000 perm   170 sec   (2584 perm/sec)   p_kst 8.813182e-02   p_cons 7.704545e-04   p_joint 2.381818e-03

Joint ci ratio: 1.198638e-01	ci left: 2.228954e-03	ci right 2.515291e-03	k: 1066	n:450000
Cons ci ratio: 2.106592e-01	ci left: 6.879185e-04	ci right 8.519529e-04	k: 345	n:450000
KS ci ratio: 1.879667e-02	ci left: 8.730217e-02	ci right 8.896092e-02	k: 39658	n:450000
GLDN   450000 perm   176 sec   (2561 perm/sec)   p_kst 8.812889e-02   p_cons 7.666667e-04   p_joint 2.368889e-03

Joint ci ratio: 1.204910e-01	ci left: 2.157300e-03	ci right 2.435985e-03	k: 1055	n:460000
Cons ci ratio: 2.085603e-01	ci left: 6.873824e-04	ci right 8.494472e-04	k: 352	n:460000
KS ci ratio: 1.860214e-02	ci left: 8.721748e-02	ci right 8.885728e-02	k: 40496	n:460000
GLDN   460000 perm   181 sec   (2536 perm/sec)   p_kst 8.803478e-02   p_cons 7.652174e-04   p_joint 2.293478e-03

Joint ci ratio: 1.195893e-01	ci left: 2.144419e-03	ci right 2.419221e-03	k: 1071	n:470000
Cons ci ratio: 2.070993e-01	ci left: 6.828417e-04	ci right 8.425653e-04	k: 357	n:470000
KS ci ratio: 1.840864e-02	ci left: 8.717885e-02	ci right 8.880070e-02	k: 41354	n:470000
GLDN   470000 perm   187 sec   (2514 perm/sec)   p_kst 8.798723e-02   p_cons 7.595745e-04   p_joint 2.278723e-03

Joint ci ratio: 1.185439e-01	ci left: 2.138148e-03	ci right 2.409583e-03	k: 1090	n:480000
Cons ci ratio: 2.048233e-01	ci left: 6.844230e-04	ci right 8.425368e-04	k: 365	n:480000
KS ci ratio: 1.822342e-02	ci left: 8.712118e-02	ci right 8.872547e-02	k: 42202	n:480000
GLDN   480000 perm   193 sec   (2493 perm/sec)   p_kst 8.792083e-02   p_cons 7.604167e-04   p_joint 2.270833e-03

Joint ci ratio: 1.180596e-01	ci left: 2.112334e-03	ci right 2.379320e-03	k: 1099	n:490000
Cons ci ratio: 2.039900e-01	ci left: 6.762640e-04	ci right 8.317780e-04	k: 368	n:490000
KS ci ratio: 1.803541e-02	ci left: 8.713910e-02	ci right 8.872700e-02	k: 43086	n:490000
GLDN   490000 perm   198 sec   (2472 perm/sec)   p_kst 8.793061e-02   p_cons 7.510204e-04   p_joint 2.242857e-03

Joint ci ratio: 1.172110e-01	ci left: 2.101145e-03	ci right 2.364676e-03	k: 1115	n:500000
Cons ci ratio: 2.026223e-01	ci left: 6.722295e-04	ci right 8.256511e-04	k: 373	n:500000
KS ci ratio: 1.784955e-02	ci left: 8.718826e-02	ci right 8.876052e-02	k: 43986	n:500000
GLDN   500000 perm   204 sec   (2450 perm/sec)   p_kst 8.797200e-02   p_cons 7.460000e-04   p_joint 2.230000e-03

Joint ci ratio: 1.181186e-01	ci left: 2.027590e-03	ci right 2.284001e-03	k: 1098	n:510000
Cons ci ratio: 2.015481e-01	ci left: 6.664946e-04	ci right 8.177016e-04	k: 377	n:510000
KS ci ratio: 1.768097e-02	ci left: 8.713012e-02	ci right 8.868633e-02	k: 44832	n:510000
GLDN   510000 perm   210 sec   (2429 perm/sec)   p_kst 8.790588e-02   p_cons 7.392157e-04   p_joint 2.152941e-03

Joint ci ratio: 1.249739e-01	ci left: 1.770418e-03	ci right 2.008264e-03	k: 981	n:520000
Cons ci ratio: 2.002287e-01	ci left: 6.628090e-04	ci right 8.120752e-04	k: 382	n:520000
KS ci ratio: 1.750302e-02	ci left: 8.720261e-02	ci right 8.874429e-02	k: 45745	n:520000
GLDN   520000 perm   216 sec   (2407 perm/sec)   p_kst 8.797115e-02   p_cons 7.346154e-04   p_joint 1.886538e-03

Joint ci ratio: 1.319582e-01	ci left: 1.552556e-03	ci right 1.773704e-03	k: 880	n:530000
Cons ci ratio: 1.976643e-01	ci left: 6.682314e-04	ci right 8.165593e-04	k: 392	n:530000
KS ci ratio: 1.733889e-02	ci left: 8.719351e-02	ci right 8.872043e-02	k: 46616	n:530000
GLDN   530000 perm   222 sec   (2385 perm/sec)   p_kst 8.795472e-02   p_cons 7.396226e-04   p_joint 1.660377e-03

Joint ci ratio: 1.305576e-01	ci left: 1.557835e-03	ci right 1.777197e-03	k: 899	n:540000
Cons ci ratio: 1.954389e-01	ci left: 6.717034e-04	ci right 8.189235e-04	k: 401	n:540000
KS ci ratio: 1.718068e-02	ci left: 8.717190e-02	ci right 8.868437e-02	k: 47480	n:540000
GLDN   540000 perm   229 sec   (2359 perm/sec)   p_kst 8.792593e-02   p_cons 7.425926e-04   p_joint 1.664815e-03

Joint ci ratio: 1.304870e-01	ci left: 1.531268e-03	ci right 1.746763e-03	k: 900	n:550000
Cons ci ratio: 1.928180e-01	ci left: 6.785188e-04	ci right 8.250045e-04	k: 412	n:550000
KS ci ratio: 1.702113e-02	ci left: 8.720366e-02	ci right 8.870250e-02	k: 48373	n:550000
GLDN   550000 perm   235 sec   (2340 perm/sec)   p_kst 8.795091e-02   p_cons 7.490909e-04   p_joint 1.636364e-03

Joint ci ratio: 1.292731e-01	ci left: 1.533295e-03	ci right 1.746914e-03	k: 917	n:560000
Cons ci ratio: 1.905248e-01	ci left: 6.834029e-04	ci right 8.289850e-04	k: 422	n:560000
KS ci ratio: 1.686557e-02	ci left: 8.723791e-02	ci right 8.872350e-02	k: 49268	n:560000
GLDN   560000 perm   242 sec   (2319 perm/sec)   p_kst 8.797857e-02   p_cons 7.535714e-04   p_joint 1.637500e-03

Joint ci ratio: 1.346722e-01	ci left: 1.384241e-03	ci right 1.585793e-03	k: 845	n:570000
Cons ci ratio: 1.891880e-01	ci left: 6.814393e-04	ci right 8.254676e-04	k: 428	n:570000
KS ci ratio: 1.670926e-02	ci left: 8.731821e-02	ci right 8.879125e-02	k: 50190	n:570000
GLDN   570000 perm   248 sec   (2298 perm/sec)   p_kst 8.805263e-02   p_cons 7.508772e-04   p_joint 1.482456e-03

Joint ci ratio: 1.334164e-01	ci left: 1.387036e-03	ci right 1.586962e-03	k: 861	n:580000
Cons ci ratio: 1.863842e-01	ci left: 6.910508e-04	ci right 8.347012e-04	k: 441	n:580000
KS ci ratio: 1.656504e-02	ci left: 8.732022e-02	ci right 8.878045e-02	k: 51068	n:580000
GLDN   580000 perm   255 sec   (2278 perm/sec)   p_kst 8.804828e-02   p_cons 7.603448e-04   p_joint 1.484483e-03

Joint ci ratio: 1.329554e-01	ci left: 1.373357e-03	ci right 1.570574e-03	k: 867	n:590000
Cons ci ratio: 1.843105e-01	ci left: 6.955010e-04	ci right 8.382882e-04	k: 451	n:590000
KS ci ratio: 1.642138e-02	ci left: 8.735260e-02	ci right 8.880060e-02	k: 51964	n:590000
GLDN   590000 perm   261 sec   (2257 perm/sec)   p_kst 8.807458e-02   p_cons 7.644068e-04   p_joint 1.469492e-03

Joint ci ratio: 1.322721e-01	ci left: 1.364969e-03	ci right 1.559895e-03	k: 876	n:600000
Cons ci ratio: 1.830995e-01	ci left: 6.934494e-04	ci right 8.347762e-04	k: 457	n:600000
KS ci ratio: 1.628172e-02	ci left: 8.738065e-02	ci right 8.881667e-02	k: 52858	n:600000
GLDN   600000 perm   268 sec   (2239 perm/sec)   p_kst 8.809667e-02   p_cons 7.616667e-04   p_joint 1.460000e-03

Joint ci ratio: 1.310082e-01	ci left: 1.369544e-03	ci right 1.563109e-03	k: 893	n:610000
Cons ci ratio: 1.817162e-01	ci left: 6.930328e-04	ci right 8.330902e-04	k: 464	n:610000
KS ci ratio: 1.615298e-02	ci left: 8.733432e-02	ci right 8.875812e-02	k: 53707	n:610000
GLDN   610000 perm   275 sec   (2221 perm/sec)   p_kst 8.804426e-02   p_cons 7.606557e-04   p_joint 1.463934e-03

Joint ci ratio: 1.302821e-01	ci left: 1.363056e-03	ci right 1.554554e-03	k: 903	n:620000
Cons ci ratio: 1.801729e-01	ci left: 6.941737e-04	ci right 8.331402e-04	k: 472	n:620000
KS ci ratio: 1.602242e-02	ci left: 8.733774e-02	ci right 8.874999e-02	k: 54586	n:620000
GLDN   620000 perm   281 sec   (2203 perm/sec)   p_kst 8.804194e-02   p_cons 7.612903e-04   p_joint 1.456452e-03

Joint ci ratio: 1.291441e-01	ci left: 1.365993e-03	ci right 1.556099e-03	k: 919	n:630000
Cons ci ratio: 1.786682e-01	ci left: 6.952833e-04	ci right 8.331838e-04	k: 480	n:630000
KS ci ratio: 1.589309e-02	ci left: 8.736007e-02	ci right 8.876118e-02	k: 55477	n:630000
GLDN   630000 perm   288 sec   (2187 perm/sec)   p_kst 8.805873e-02   p_cons 7.619048e-04   p_joint 1.458730e-03

Joint ci ratio: 1.277623e-01	ci left: 1.374896e-03	ci right 1.564038e-03	k: 939	n:640000
Cons ci ratio: 1.768391e-01	ci left: 6.993494e-04	ci right 8.364847e-04	k: 490	n:640000
KS ci ratio: 1.577237e-02	ci left: 8.732571e-02	ci right 8.871552e-02	k: 56332	n:640000
GLDN   640000 perm   295 sec   (2169 perm/sec)   p_kst 8.801875e-02   p_cons 7.656250e-04   p_joint 1.467187e-03

Joint ci ratio: 1.334271e-01	ci left: 1.237656e-03	ci right 1.416067e-03	k: 861	n:650000
Cons ci ratio: 1.763020e-01	ci left: 6.930014e-04	ci right 8.284351e-04	k: 493	n:650000
KS ci ratio: 1.565540e-02	ci left: 8.728171e-02	ci right 8.866043e-02	k: 57180	n:650000
GLDN   650000 perm   302 sec   (2153 perm/sec)   p_kst 8.796923e-02   p_cons 7.584615e-04   p_joint 1.324615e-03

Joint ci ratio: 1.068576e-01	ci left: 1.926090e-03	ci right 2.144985e-03	k: 1342	n:660000
Cons ci ratio: 1.748915e-01	ci left: 6.940899e-04	ci right 8.285364e-04	k: 501	n:660000
KS ci ratio: 1.553645e-02	ci left: 8.728588e-02	ci right 8.865410e-02	k: 58059	n:660000
GLDN   660000 perm   309 sec   (2136 perm/sec)   p_kst 8.796818e-02   p_cons 7.590909e-04   p_joint 2.033333e-03

Joint ci ratio: 1.061098e-01	ci left: 1.924945e-03	ci right 2.142083e-03	k: 1361	n:670000
Cons ci ratio: 1.738558e-01	ci left: 6.922946e-04	ci right 8.255160e-04	k: 507	n:670000
KS ci ratio: 1.541516e-02	ci left: 8.734203e-02	ci right 8.870034e-02	k: 58973	n:670000
GLDN   670000 perm   316 sec   (2120 perm/sec)   p_kst 8.801940e-02   p_cons 7.567164e-04   p_joint 2.031343e-03

Joint ci ratio: 1.049216e-01	ci left: 1.941023e-03	ci right 2.157372e-03	k: 1392	n:680000
Cons ci ratio: 1.725028e-01	ci left: 6.933686e-04	ci right 8.256501e-04	k: 515	n:680000
KS ci ratio: 1.530310e-02	ci left: 8.732915e-02	ci right 8.867730e-02	k: 59841	n:680000
GLDN   680000 perm   324 sec   (2102 perm/sec)   p_kst 8.800147e-02   p_cons 7.573529e-04   p_joint 2.047059e-03

Joint ci ratio: 8.605050e-02	ci left: 2.869487e-03	ci right 3.128916e-03	k: 2068	n:690000
Cons ci ratio: 1.715087e-01	ci left: 6.916411e-04	ci right 8.227539e-04	k: 521	n:690000
KS ci ratio: 1.519524e-02	ci left: 8.729790e-02	ci right 8.863599e-02	k: 60696	n:690000
GLDN   690000 perm   331 sec   (2085 perm/sec)   p_kst 8.796522e-02   p_cons 7.550725e-04   p_joint 2.997101e-03

Joint ci ratio: 7.816574e-02	ci left: 3.440028e-03	ci right 3.721247e-03	k: 2505	n:700000
Cons ci ratio: 1.702093e-01	ci left: 6.927004e-04	ci right 8.229171e-04	k: 529	n:700000
KS ci ratio: 1.509191e-02	ci left: 8.724338e-02	ci right 8.857146e-02	k: 61534	n:700000
GLDN   700000 perm   339 sec   (2067 perm/sec)   p_kst 8.790571e-02   p_cons 7.557143e-04   p_joint 3.578571e-03

Joint ci ratio: 7.912399e-02	ci left: 3.308723e-03	ci right 3.582677e-03	k: 2445	n:710000
Cons ci ratio: 1.681588e-01	ci left: 7.004789e-04	ci right 8.304108e-04	k: 542	n:710000
KS ci ratio: 1.498855e-02	ci left: 8.721288e-02	ci right 8.853133e-02	k: 62388	n:710000
GLDN   710000 perm   346 sec   (2051 perm/sec)   p_kst 8.787042e-02   p_cons 7.633803e-04   p_joint 3.443662e-03

Joint ci ratio: 7.870725e-02	ci left: 3.298167e-03	ci right 3.569742e-03	k: 2471	n:720000
Cons ci ratio: 1.673902e-01	ci left: 6.974028e-04	ci right 8.261132e-04	k: 547	n:720000
KS ci ratio: 1.488059e-02	ci left: 8.725524e-02	ci right 8.856474e-02	k: 63294	n:720000
GLDN   720000 perm   354 sec   (2036 perm/sec)   p_kst 8.790833e-02   p_cons 7.597222e-04   p_joint 3.431944e-03

Joint ci ratio: 7.820283e-02	ci left: 3.295962e-03	ci right 3.565537e-03	k: 2503	n:730000
Cons ci ratio: 1.663314e-01	ci left: 6.970379e-04	ci right 8.247857e-04	k: 554	n:730000
KS ci ratio: 1.477050e-02	ci left: 8.734426e-02	ci right 8.864532e-02	k: 64235	n:730000
GLDN   730000 perm   361 sec   (2020 perm/sec)   p_kst 8.799315e-02   p_cons 7.589041e-04   p_joint 3.428767e-03

Joint ci ratio: 7.781583e-02	ci left: 3.284546e-03	ci right 3.551797e-03	k: 2528	n:740000
Cons ci ratio: 1.652923e-01	ci left: 6.966854e-04	ci right 8.234916e-04	k: 561	n:740000
KS ci ratio: 1.467147e-02	ci left: 8.733662e-02	ci right 8.862877e-02	k: 65106	n:740000
GLDN   740000 perm   369 sec   (2005 perm/sec)   p_kst 8.798108e-02   p_cons 7.581081e-04   p_joint 3.416216e-03

Joint ci ratio: 7.884077e-02	ci left: 3.155774e-03	ci right 3.416085e-03	k: 2463	n:750000
Cons ci ratio: 1.645622e-01	ci left: 6.937876e-04	ci right 8.194535e-04	k: 566	n:750000
KS ci ratio: 1.457222e-02	ci left: 8.735314e-02	ci right 8.863672e-02	k: 65995	n:750000
GLDN   750000 perm   378 sec   (1986 perm/sec)   p_kst 8.799333e-02   p_cons 7.546667e-04   p_joint 3.284000e-03

Joint ci ratio: 7.836530e-02	ci left: 3.152949e-03	ci right 3.411387e-03	k: 2493	n:760000
Cons ci ratio: 1.639851e-01	ci left: 6.897055e-04	ci right 8.141507e-04	k: 570	n:760000
KS ci ratio: 1.447211e-02	ci left: 8.740072e-02	ci right 8.867610e-02	k: 66908	n:760000
GLDN   760000 perm   386 sec   (1971 perm/sec)   p_kst 8.803684e-02   p_cons 7.500000e-04   p_joint 3.280263e-03

Joint ci ratio: 7.788285e-02	ci left: 3.151474e-03	ci right 3.408129e-03	k: 2524	n:770000
Cons ci ratio: 1.634141e-01	ci left: 6.857302e-04	ci right 8.089849e-04	k: 574	n:770000
KS ci ratio: 1.437636e-02	ci left: 8.742121e-02	ci right 8.868838e-02	k: 67801	n:770000
GLDN   770000 perm   393 sec   (1957 perm/sec)   p_kst 8.805325e-02   p_cons 7.454545e-04   p_joint 3.277922e-03

Joint ci ratio: 7.818015e-02	ci left: 3.087183e-03	ci right 3.339605e-03	k: 2505	n:780000
Cons ci ratio: 1.627085e-01	ci left: 6.830874e-04	ci right 8.052850e-04	k: 579	n:780000
KS ci ratio: 1.428260e-02	ci left: 8.743992e-02	ci right 8.869903e-02	k: 68693	n:780000
GLDN   780000 perm   401 sec   (1943 perm/sec)   p_kst 8.806795e-02   p_cons 7.423077e-04   p_joint 3.211538e-03

Joint ci ratio: 7.782428e-02	ci left: 3.076650e-03	ci right 3.327014e-03	k: 2528	n:790000
Cons ci ratio: 1.617355e-01	ci left: 6.829417e-04	ci right 8.043117e-04	k: 586	n:790000
KS ci ratio: 1.419703e-02	ci left: 8.738627e-02	ci right 8.863701e-02	k: 69528	n:790000
GLDN   790000 perm   410 sec   (1928 perm/sec)   p_kst 8.801013e-02   p_cons 7.417722e-04   p_joint 3.200000e-03

Joint ci ratio: 8.185233e-02	ci left: 2.741708e-03	ci right 2.976914e-03	k: 2286	n:800000
Cons ci ratio: 1.609153e-01	ci left: 6.816021e-04	ci right 8.020604e-04	k: 592	n:800000
KS ci ratio: 1.410529e-02	ci left: 8.742120e-02	ci right 8.866428e-02	k: 70433	n:800000
GLDN   800000 perm   418 sec   (1914 perm/sec)   p_kst 8.804125e-02   p_cons 7.400000e-04   p_joint 2.857500e-03

Joint ci ratio: 8.126789e-02	ci left: 2.747770e-03	ci right 2.981734e-03	k: 2319	n:810000
Cons ci ratio: 1.594430e-01	ci left: 6.862233e-04	ci right 8.062824e-04	k: 603	n:810000
KS ci ratio: 1.401649e-02	ci left: 8.744176e-02	ci right 8.867724e-02	k: 71327	n:810000
GLDN   810000 perm   426 sec   (1901 perm/sec)   p_kst 8.805802e-02   p_cons 7.444444e-04   p_joint 2.862963e-03

Joint ci ratio: 8.336751e-02	ci left: 2.576894e-03	ci right 2.802252e-03	k: 2204	n:820000
Cons ci ratio: 1.582680e-01	ci left: 6.883941e-04	ci right 8.078611e-04	k: 612	n:820000
KS ci ratio: 1.392944e-02	ci left: 8.746062e-02	ci right 8.868864e-02	k: 72220	n:820000
GLDN   820000 perm   434 sec   (1888 perm/sec)   p_kst 8.807317e-02   p_cons 7.463415e-04   p_joint 2.687805e-03

Joint ci ratio: 8.280595e-02	ci left: 2.581241e-03	ci right 2.805385e-03	k: 2234	n:830000
Cons ci ratio: 1.572452e-01	ci left: 6.893583e-04	ci right 8.081466e-04	k: 620	n:830000
KS ci ratio: 1.384494e-02	ci left: 8.746824e-02	ci right 8.868885e-02	k: 73104	n:830000
GLDN   830000 perm   443 sec   (1875 perm/sec)   p_kst 8.807711e-02   p_cons 7.469880e-04   p_joint 2.691566e-03

Joint ci ratio: 8.249330e-02	ci left: 2.570331e-03	ci right 2.792645e-03	k: 2251	n:840000
Cons ci ratio: 1.562420e-01	ci left: 6.903019e-04	ci right 8.084228e-04	k: 628	n:840000
KS ci ratio: 1.376532e-02	ci left: 8.743654e-02	ci right 8.864964e-02	k: 73955	n:840000
GLDN   840000 perm   451 sec   (1862 perm/sec)   p_kst 8.804167e-02   p_cons 7.476190e-04   p_joint 2.679762e-03

Joint ci ratio: 8.404287e-02	ci left: 2.445623e-03	ci right 2.661319e-03	k: 2169	n:850000
Cons ci ratio: 1.541716e-01	ci left: 7.014043e-04	ci right 8.196877e-04	k: 645	n:850000
KS ci ratio: 1.368075e-02	ci left: 8.747949e-02	ci right 8.868567e-02	k: 74869	n:850000
GLDN   850000 perm   460 sec   (1849 perm/sec)   p_kst 8.808118e-02   p_cons 7.588235e-04   p_joint 2.551765e-03

Joint ci ratio: 8.358201e-02	ci left: 2.444508e-03	ci right 2.658865e-03	k: 2193	n:860000
Cons ci ratio: 1.533431e-01	ci left: 7.010748e-04	ci right 8.186089e-04	k: 652	n:860000
KS ci ratio: 1.360273e-02	ci left: 8.746235e-02	ci right 8.866136e-02	k: 75732	n:860000
GLDN   860000 perm   468 sec   (1837 perm/sec)   p_kst 8.806047e-02   p_cons 7.581395e-04   p_joint 2.550000e-03

Joint ci ratio: 8.451517e-02	ci left: 2.362393e-03	ci right 2.571976e-03	k: 2145	n:870000
Cons ci ratio: 1.525278e-01	ci left: 7.007546e-04	ci right 8.175533e-04	k: 659	n:870000
KS ci ratio: 1.352052e-02	ci left: 8.751093e-02	ci right 8.870331e-02	k: 76652	n:870000
GLDN   870000 perm   477 sec   (1824 perm/sec)   p_kst 8.810575e-02   p_cons 7.574713e-04   p_joint 2.465517e-03

Joint ci ratio: 8.445720e-02	ci left: 2.338883e-03	ci right 2.546232e-03	k: 2148	n:880000
Cons ci ratio: 1.513851e-01	ci left: 7.037231e-04	ci right 8.200582e-04	k: 669	n:880000
KS ci ratio: 1.344443e-02	ci left: 8.750292e-02	ci right 8.868843e-02	k: 77523	n:880000
GLDN   880000 perm   486 sec   (1812 perm/sec)   p_kst 8.809432e-02   p_cons 7.602273e-04   p_joint 2.440909e-03

Joint ci ratio: 8.449779e-02	ci left: 2.310403e-03	ci right 2.515329e-03	k: 2146	n:890000
Cons ci ratio: 1.503783e-01	ci left: 7.055467e-04	ci right 8.213379e-04	k: 678	n:890000
KS ci ratio: 1.336822e-02	ci left: 8.751192e-02	ci right 8.869077e-02	k: 78409	n:890000
GLDN   890000 perm   495 sec   (1799 perm/sec)   p_kst 8.810000e-02   p_cons 7.617978e-04   p_joint 2.411236e-03

Joint ci ratio: 8.391328e-02	ci left: 2.317363e-03	ci right 2.521416e-03	k: 2176	n:900000
Cons ci ratio: 1.500476e-01	ci left: 7.009152e-04	ci right 8.156706e-04	k: 681	n:900000
KS ci ratio: 1.329016e-02	ci left: 8.755839e-02	ci right 8.873093e-02	k: 79329	n:900000
GLDN   900000 perm   503 sec   (1788 perm/sec)   p_kst 8.814333e-02   p_cons 7.566667e-04   p_joint 2.417778e-03

Joint ci ratio: 8.334075e-02	ci left: 2.324176e-03	ci right 2.527364e-03	k: 2206	n:910000
Cons ci ratio: 1.489593e-01	ci left: 7.037909e-04	ci right 8.181069e-04	k: 691	n:910000
KS ci ratio: 1.321679e-02	ci left: 8.756333e-02	ci right 8.872941e-02	k: 80212	n:910000
GLDN   910000 perm   512 sec   (1776 perm/sec)   p_kst 8.814505e-02   p_cons 7.593407e-04   p_joint 2.424176e-03

Joint ci ratio: 8.300324e-02	ci left: 2.318071e-03	ci right 2.519865e-03	k: 2224	n:920000
Cons ci ratio: 1.484243e-01	ci left: 7.013735e-04	ci right 8.148513e-04	k: 696	n:920000
KS ci ratio: 1.314810e-02	ci left: 8.752591e-02	ci right 8.868538e-02	k: 81056	n:920000
GLDN   920000 perm   521 sec   (1765 perm/sec)   p_kst 8.810435e-02   p_cons 7.565217e-04   p_joint 2.417391e-03

Joint ci ratio: 8.292963e-02	ci left: 2.297356e-03	ci right 2.497161e-03	k: 2228	n:930000
Cons ci ratio: 1.475797e-01	ci left: 7.021155e-04	ci right 8.150099e-04	k: 704	n:930000
KS ci ratio: 1.307416e-02	ci left: 8.756650e-02	ci right 8.871994e-02	k: 81972	n:930000
GLDN   930000 perm   531 sec   (1753 perm/sec)   p_kst 8.814194e-02   p_cons 7.569892e-04   p_joint 2.395699e-03

Joint ci ratio: 8.254185e-02	ci left: 2.294794e-03	ci right 2.493398e-03	k: 2249	n:940000
Cons ci ratio: 1.469558e-01	ci left: 7.007939e-04	ci right 8.129577e-04	k: 710	n:940000
KS ci ratio: 1.300542e-02	ci left: 8.755745e-02	ci right 8.870466e-02	k: 82842	n:940000
GLDN   940000 perm   540 sec   (1742 perm/sec)   p_kst 8.812979e-02   p_cons 7.553191e-04   p_joint 2.392553e-03

Joint ci ratio: 8.228668e-02	ci left: 2.285071e-03	ci right 2.482193e-03	k: 2263	n:950000
Cons ci ratio: 1.466471e-01	ci left: 6.964589e-04	ci right 8.076742e-04	k: 713	n:950000
KS ci ratio: 1.293554e-02	ci left: 8.757590e-02	ci right 8.871714e-02	k: 83738	n:950000
GLDN   950000 perm   549 sec   (1730 perm/sec)   p_kst 8.814526e-02   p_cons 7.505263e-04   p_joint 2.382105e-03

Joint ci ratio: 8.223311e-02	ci left: 2.264328e-03	ci right 2.459527e-03	k: 2266	n:960000
Cons ci ratio: 1.464426e-01	ci left: 6.912109e-04	ci right 8.014207e-04	k: 715	n:960000
KS ci ratio: 1.286445e-02	ci left: 8.762306e-02	ci right 8.875860e-02	k: 84662	n:960000
GLDN   960000 perm   558 sec   (1720 perm/sec)   p_kst 8.818958e-02   p_cons 7.447917e-04   p_joint 2.360417e-03

Joint ci ratio: 8.180123e-02	ci left: 2.265219e-03	ci right 2.459421e-03	k: 2290	n:970000
Cons ci ratio: 1.452303e-01	ci left: 6.960049e-04	ci right 8.059807e-04	k: 727	n:970000
KS ci ratio: 1.279853e-02	ci left: 8.761889e-02	ci right 8.874852e-02	k: 85537	n:970000
GLDN   970000 perm   568 sec   (1709 perm/sec)   p_kst 8.818247e-02   p_cons 7.494845e-04   p_joint 2.360825e-03

Joint ci ratio: 8.130571e-02	ci left: 2.270094e-03	ci right 2.463478e-03	k: 2318	n:980000
Cons ci ratio: 1.444388e-01	ci left: 6.967703e-04	ci right 8.062153e-04	k: 735	n:980000
KS ci ratio: 1.273353e-02	ci left: 8.761585e-02	ci right 8.873965e-02	k: 86413	n:980000
GLDN   980000 perm   577 sec   (1698 perm/sec)   p_kst 8.817653e-02   p_cons 7.500000e-04   p_joint 2.365306e-03

Joint ci ratio: 7.377825e-02	ci left: 2.738505e-03	ci right 2.949269e-03	k: 2814	n:990000
Cons ci ratio: 1.437568e-01	ci left: 6.965480e-04	ci right 8.053972e-04	k: 742	n:990000
KS ci ratio: 1.266817e-02	ci left: 8.763000e-02	ci right 8.874817e-02	k: 87306	n:990000
GLDN   990000 perm   587 sec   (1687 perm/sec)   p_kst 8.818788e-02   p_cons 7.494949e-04   p_joint 2.842424e-03

Joint ci ratio: 9.910736e-02	ci left: 1.484570e-03	ci right 1.640340e-03	k: 1561	n:1000000
Cons ci ratio: 1.543000e-01	ci left: 5.952297e-04	ci right 6.956992e-04	k: 644	n:1000000
KS ci ratio: 1.260529e-02	ci left: 8.762493e-02	ci right 8.873745e-02	k: 88180	n:1000000
GLDN   1000000 perm   597 sec   (1676 perm/sec)   p_kst 8.818000e-02   p_cons 6.440000e-04   p_joint 1.561000e-03

Joint ci ratio: 1.006028e-01	ci left: 1.425462e-03	ci right 1.577420e-03	k: 1515	n:1010000
Cons ci ratio: 1.538239e-01	ci left: 5.931440e-04	ci right 6.929241e-04	k: 648	n:1010000
KS ci ratio: 1.254271e-02	ci left: 8.762788e-02	ci right 8.873488e-02	k: 89062	n:1010000
GLDN   1010000 perm   606 sec   (1666 perm/sec)   p_kst 8.818020e-02   p_cons 6.415842e-04   p_joint 1.500000e-03

Joint ci ratio: 9.997804e-02	ci left: 1.429647e-03	ci right 1.581049e-03	k: 1534	n:1020000
Cons ci ratio: 1.528844e-01	ci left: 5.948711e-04	ci right 6.942746e-04	k: 656	n:1020000
KS ci ratio: 1.248205e-02	ci left: 8.761808e-02	ci right 8.871956e-02	k: 89931	n:1020000
GLDN   1020000 perm   616 sec   (1656 perm/sec)   p_kst 8.816765e-02   p_cons 6.431373e-04   p_joint 1.503922e-03

Joint ci ratio: 9.936478e-02	ci left: 1.433754e-03	ci right 1.584605e-03	k: 1553	n:1030000
Cons ci ratio: 1.518477e-01	ci left: 5.975005e-04	ci right 6.966047e-04	k: 665	n:1030000
KS ci ratio: 1.242354e-02	ci left: 8.759202e-02	ci right 8.868797e-02	k: 90783	n:1030000
GLDN   1030000 perm   626 sec   (1646 perm/sec)   p_kst 8.813883e-02   p_cons 6.456311e-04   p_joint 1.507767e-03

Joint ci ratio: 1.013101e-01	ci left: 1.364658e-03	ci right 1.511218e-03	k: 1494	n:1040000
Cons ci ratio: 1.511683e-01	ci left: 5.973058e-04	ci right 6.958944e-04	k: 671	n:1040000
KS ci ratio: 1.236015e-02	ci left: 8.764030e-02	ci right 8.873122e-02	k: 91712	n:1040000
GLDN   1040000 perm   636 sec   (1636 perm/sec)   p_kst 8.818462e-02   p_cons 6.451923e-04   p_joint 1.436538e-03

Joint ci ratio: 1.008726e-01	ci left: 1.363730e-03	ci right 1.509519e-03	k: 1507	n:1050000
Cons ci ratio: 1.504980e-01	ci left: 5.971158e-04	ci right 6.951966e-04	k: 677	n:1050000
KS ci ratio: 1.230019e-02	ci left: 8.765539e-02	ci right 8.874117e-02	k: 92607	n:1050000
GLDN   1050000 perm   646 sec   (1626 perm/sec)   p_kst 8.819714e-02   p_cons 6.447619e-04   p_joint 1.435238e-03

Joint ci ratio: 1.004076e-01	ci left: 1.363739e-03	ci right 1.508818e-03	k: 1521	n:1060000
Cons ci ratio: 1.502768e-01	ci left: 5.932983e-04	ci right 6.905960e-04	k: 679	n:1060000
KS ci ratio: 1.224311e-02	ci left: 8.764386e-02	ci right 8.872443e-02	k: 93474	n:1060000
GLDN   1060000 perm   656 sec   (1616 perm/sec)   p_kst 8.818302e-02   p_cons 6.405660e-04   p_joint 1.434906e-03

Joint ci ratio: 1.001123e-01	ci left: 1.359194e-03	ci right 1.503339e-03	k: 1530	n:1070000
Cons ci ratio: 1.496182e-01	ci left: 5.931506e-04	ci right 6.899595e-04	k: 685	n:1070000
KS ci ratio: 1.219093e-02	ci left: 8.757851e-02	ci right 8.865363e-02	k: 94283	n:1070000
GLDN   1070000 perm   666 sec   (1606 perm/sec)   p_kst 8.811495e-02   p_cons 6.401869e-04   p_joint 1.429907e-03

Joint ci ratio: 9.968999e-02	ci left: 1.358345e-03	ci right 1.501757e-03	k: 1543	n:1080000
Cons ci ratio: 1.494009e-01	ci left: 5.894409e-04	ci right 6.854922e-04	k: 687	n:1080000
KS ci ratio: 1.213192e-02	ci left: 8.761317e-02	ci right 8.868348e-02	k: 95199	n:1080000
GLDN   1080000 perm   676 sec   (1597 perm/sec)   p_kst 8.814722e-02   p_cons 6.361111e-04   p_joint 1.428704e-03

Joint ci ratio: 9.895528e-02	ci left: 1.366461e-03	ci right 1.509604e-03	k: 1566	n:1090000
Cons ci ratio: 1.486466e-01	ci left: 5.902158e-04	ci right 6.858646e-04	k: 694	n:1090000
KS ci ratio: 1.207514e-02	ci left: 8.762892e-02	ci right 8.869437e-02	k: 96095	n:1090000
GLDN   1090000 perm   687 sec   (1586 perm/sec)   p_kst 8.816055e-02   p_cons 6.366972e-04   p_joint 1.436697e-03

Joint ci ratio: 9.842272e-02	ci left: 1.369111e-03	ci right 1.511716e-03	k: 1583	n:1100000
Cons ci ratio: 1.479036e-01	ci left: 5.909777e-04	ci right 6.862290e-04	k: 701	n:1100000
KS ci ratio: 1.202309e-02	ci left: 8.759180e-02	ci right 8.865219e-02	k: 96933	n:1100000
GLDN   1100000 perm   699 sec   (1574 perm/sec)   p_kst 8.812091e-02   p_cons 6.372727e-04   p_joint 1.439091e-03

Joint ci ratio: 9.802137e-02	ci left: 1.368201e-03	ci right 1.510097e-03	k: 1596	n:1110000
Cons ci ratio: 1.473797e-01	ci left: 5.899917e-04	ci right 6.847176e-04	k: 706	n:1110000
KS ci ratio: 1.197044e-02	ci left: 8.757244e-02	ci right 8.862791e-02	k: 97790	n:1110000
GLDN   1110000 perm   710 sec   (1564 perm/sec)   p_kst 8.809910e-02   p_cons 6.360360e-04   p_joint 1.437838e-03

Joint ci ratio: 9.741305e-02	ci left: 1.373406e-03	ci right 1.514907e-03	k: 1616	n:1120000
Cons ci ratio: 1.467584e-01	ci left: 5.898839e-04	ci right 6.841581e-04	k: 712	n:1120000
KS ci ratio: 1.191953e-02	ci left: 8.753918e-02	ci right 8.858974e-02	k: 98631	n:1120000
GLDN   1120000 perm   721 sec   (1554 perm/sec)   p_kst 8.806339e-02   p_cons 6.357143e-04   p_joint 1.442857e-03

Joint ci ratio: 9.705369e-02	ci left: 1.371613e-03	ci right 1.512378e-03	k: 1628	n:1130000
Cons ci ratio: 1.461448e-01	ci left: 5.897789e-04	ci right 6.836078e-04	k: 718	n:1130000
KS ci ratio: 1.186704e-02	ci left: 8.753653e-02	ci right 8.858240e-02	k: 99506	n:1130000
GLDN   1130000 perm   732 sec   (1544 perm/sec)   p_kst 8.805841e-02   p_cons 6.353982e-04   p_joint 1.440708e-03

Joint ci ratio: 9.663933e-02	ci left: 1.371565e-03	ci right 1.511690e-03	k: 1642	n:1140000
Cons ci ratio: 1.456393e-01	ci left: 5.888312e-04	ci right 6.821572e-04	k: 723	n:1140000
KS ci ratio: 1.181259e-02	ci left: 8.756981e-02	ci right 8.861124e-02	k: 100422	n:1140000
GLDN   1140000 perm   743 sec   (1534 perm/sec)   p_kst 8.808947e-02   p_cons 6.342105e-04   p_joint 1.440351e-03

Joint ci ratio: 9.634676e-02	ci left: 1.368124e-03	ci right 1.507450e-03	k: 1652	n:1150000
Cons ci ratio: 1.453387e-01	ci left: 5.862246e-04	ci right 6.789291e-04	k: 726	n:1150000
KS ci ratio: 1.176061e-02	ci left: 8.757910e-02	ci right 8.861602e-02	k: 101311	n:1150000
GLDN   1150000 perm   755 sec   (1524 perm/sec)   p_kst 8.809652e-02   p_cons 6.313043e-04   p_joint 1.436522e-03

Joint ci ratio: 9.602792e-02	ci left: 1.365584e-03	ci right 1.504166e-03	k: 1663	n:1160000
Cons ci ratio: 1.448416e-01	ci left: 5.853248e-04	ci right 6.775430e-04	k: 731	n:1160000
KS ci ratio: 1.170943e-02	ci left: 8.758652e-02	ci right 8.861899e-02	k: 102198	n:1160000
GLDN   1160000 perm   767 sec   (1513 perm/sec)   p_kst 8.810172e-02   p_cons 6.301724e-04   p_joint 1.433621e-03

Joint ci ratio: 9.548414e-02	ci left: 1.369763e-03	ci right 1.507938e-03	k: 1682	n:1170000
Cons ci ratio: 1.438620e-01	ci left: 5.885604e-04	ci right 6.806074e-04	k: 741	n:1170000
KS ci ratio: 1.165705e-02	ci left: 8.761940e-02	ci right 8.864760e-02	k: 103115	n:1170000
GLDN   1170000 perm   778 sec   (1503 perm/sec)   p_kst 8.813248e-02   p_cons 6.333333e-04   p_joint 1.437607e-03

Joint ci ratio: 9.511754e-02	ci left: 1.368909e-03	ci right 1.506438e-03	k: 1695	n:1180000
Cons ci ratio: 1.428071e-01	ci left: 5.925605e-04	ci right 6.844956e-04	k: 752	n:1180000
KS ci ratio: 1.160567e-02	ci left: 8.764750e-02	ci right 8.867147e-02	k: 104027	n:1180000
GLDN   1180000 perm   789 sec   (1495 perm/sec)   p_kst 8.815847e-02   p_cons 6.372881e-04   p_joint 1.436441e-03

Joint ci ratio: 9.461663e-02	ci left: 1.372173e-03	ci right 1.509264e-03	k: 1713	n:1190000
Cons ci ratio: 1.420544e-01	ci left: 5.940641e-04	ci right 6.857056e-04	k: 760	n:1190000
KS ci ratio: 1.155533e-02	ci left: 8.767011e-02	ci right 8.868988e-02	k: 104933	n:1190000
GLDN   1190000 perm   801 sec   (1485 perm/sec)   p_kst 8.817899e-02   p_cons 6.386555e-04   p_joint 1.439496e-03

Joint ci ratio: 9.417802e-02	ci left: 1.373757e-03	ci right 1.510334e-03	k: 1729	n:1200000
Cons ci ratio: 1.414977e-01	ci left: 5.939362e-04	ci right 6.851686e-04	k: 766	n:1200000
KS ci ratio: 1.150618e-02	ci left: 8.768488e-02	ci right 8.870045e-02	k: 105830	n:1200000
GLDN   1200000 perm   813 sec   (1477 perm/sec)   p_kst 8.819167e-02   p_cons 6.383333e-04   p_joint 1.440833e-03

Joint ci ratio: 9.385317e-02	ci left: 1.372088e-03	ci right 1.508003e-03	k: 1741	n:1210000
Cons ci ratio: 1.411303e-01	ci left: 5.922165e-04	ci right 6.829287e-04	k: 770	n:1210000
KS ci ratio: 1.145782e-02	ci left: 8.769693e-02	ci right 8.870835e-02	k: 106724	n:1210000
GLDN   1210000 perm   824 sec   (1468 perm/sec)   p_kst 8.820165e-02   p_cons 6.363636e-04   p_joint 1.438843e-03

Joint ci ratio: 9.456308e-02	ci left: 1.340031e-03	ci right 1.473830e-03	k: 1715	n:1220000
Cons ci ratio: 1.406750e-01	ci left: 5.913162e-04	ci right 6.815737e-04	k: 775	n:1220000
KS ci ratio: 1.141135e-02	ci left: 8.769081e-02	ci right 8.869803e-02	k: 107596	n:1220000
GLDN   1220000 perm   835 sec   (1460 perm/sec)   p_kst 8.819344e-02   p_cons 6.352459e-04   p_joint 1.405738e-03

Joint ci ratio: 9.426156e-02	ci left: 1.337868e-03	ci right 1.471002e-03	k: 1726	n:1230000
Cons ci ratio: 1.399553e-01	ci left: 5.927845e-04	ci right 6.827646e-04	k: 783	n:1230000
KS ci ratio: 1.136360e-02	ci left: 8.771075e-02	ci right 8.871395e-02	k: 108500	n:1230000
GLDN   1230000 perm   847 sec   (1453 perm/sec)   p_kst 8.821138e-02   p_cons 6.365854e-04   p_joint 1.403252e-03

Joint ci ratio: 9.390881e-02	ci left: 1.337316e-03	ci right 1.469869e-03	k: 1739	n:1240000
Cons ci ratio: 1.395998e-01	ci left: 5.911169e-04	ci right 6.805971e-04	k: 787	n:1240000
KS ci ratio: 1.131747e-02	ci left: 8.771590e-02	ci right 8.871506e-02	k: 109386	n:1240000
GLDN   1240000 perm   859 sec   (1444 perm/sec)   p_kst 8.821452e-02   p_cons 6.346774e-04   p_joint 1.402419e-03

Joint ci ratio: 9.356000e-02	ci left: 1.336773e-03	ci right 1.468754e-03	k: 1752	n:1250000
Cons ci ratio: 1.388964e-01	ci left: 5.925651e-04	ci right 6.817751e-04	k: 795	n:1250000
KS ci ratio: 1.127262e-02	ci left: 8.771060e-02	ci right 8.870571e-02	k: 110259	n:1250000
GLDN   1250000 perm   871 sec   (1436 perm/sec)   p_kst 8.820720e-02   p_cons 6.360000e-04   p_joint 1.401600e-03

Joint ci ratio: 8.524672e-02	ci left: 1.603961e-03	ci right 1.747551e-03	k: 2110	n:1260000
Cons ci ratio: 1.382897e-01	ci left: 5.932251e-04	ci right 6.821122e-04	k: 802	n:1260000
KS ci ratio: 1.122708e-02	ci left: 8.772280e-02	ci right 8.871401e-02	k: 111154	n:1260000
GLDN   1260000 perm   883 sec   (1426 perm/sec)   p_kst 8.821746e-02   p_cons 6.365079e-04   p_joint 1.674603e-03

Joint ci ratio: 8.474611e-02	ci left: 1.610598e-03	ci right 1.753894e-03	k: 2135	n:1270000
Cons ci ratio: 1.375210e-01	ci left: 5.953962e-04	ci right 6.840722e-04	k: 811	n:1270000
KS ci ratio: 1.118483e-02	ci left: 8.769556e-02	ci right 8.868270e-02	k: 111999	n:1270000
GLDN   1270000 perm   895 sec   (1419 perm/sec)   p_kst 8.818819e-02   p_cons 6.385827e-04   p_joint 1.681102e-03

Joint ci ratio: 8.439123e-02	ci left: 1.611781e-03	ci right 1.754552e-03	k: 2153	n:1280000
Cons ci ratio: 1.367650e-01	ci left: 5.975347e-04	ci right 6.860001e-04	k: 820	n:1280000
KS ci ratio: 1.114013e-02	ci left: 8.771082e-02	ci right 8.869417e-02	k: 112898	n:1280000
GLDN   1280000 perm   907 sec   (1411 perm/sec)   p_kst 8.820156e-02   p_cons 6.406250e-04   p_joint 1.682031e-03

Joint ci ratio: 8.429384e-02	ci left: 1.603080e-03	ci right 1.744909e-03	k: 2158	n:1290000
Cons ci ratio: 1.357760e-01	ci left: 6.018879e-04	ci right 6.903015e-04	k: 832	n:1290000
KS ci ratio: 1.109943e-02	ci left: 8.767560e-02	ci right 8.865493e-02	k: 113732	n:1290000
GLDN   1290000 perm   920 sec   (1403 perm/sec)   p_kst 8.816434e-02   p_cons 6.449612e-04   p_joint 1.672868e-03

Joint ci ratio: 8.396391e-02	ci left: 1.603551e-03	ci right 1.744838e-03	k: 2175	n:1300000
Cons ci ratio: 1.352091e-01	ci left: 6.024601e-04	ci right 6.905585e-04	k: 839	n:1300000
KS ci ratio: 1.105765e-02	ci left: 8.766317e-02	ci right 8.863866e-02	k: 114595	n:1300000
GLDN   1300000 perm   932 sec   (1395 perm/sec)   p_kst 8.815000e-02   p_cons 6.453846e-04   p_joint 1.673077e-03

Joint ci ratio: 8.388726e-02	ci left: 1.594299e-03	ci right 1.734637e-03	k: 2179	n:1310000
Cons ci ratio: 1.345697e-01	ci left: 6.037620e-04	ci right 6.915998e-04	k: 847	n:1310000
KS ci ratio: 1.101460e-02	ci left: 8.767607e-02	ci right 8.864788e-02	k: 115491	n:1310000
GLDN   1310000 perm   944 sec   (1387 perm/sec)   p_kst 8.816107e-02   p_cons 6.465649e-04   p_joint 1.663359e-03

Joint ci ratio: 8.412001e-02	ci left: 1.573320e-03	ci right 1.712214e-03	k: 2167	n:1320000
Cons ci ratio: 1.340177e-01	ci left: 6.043130e-04	ci right 6.918415e-04	k: 854	n:1320000
KS ci ratio: 1.097102e-02	ci left: 8.770390e-02	ci right 8.867215e-02	k: 116407	n:1320000
GLDN   1320000 perm   956 sec   (1380 perm/sec)   p_kst 8.818712e-02   p_cons 6.469697e-04   p_joint 1.641667e-03

Joint ci ratio: 8.394618e-02	ci left: 1.568115e-03	ci right 1.706250e-03	k: 2176	n:1330000
Cons ci ratio: 1.337054e-01	ci left: 6.026760e-04	ci right 6.897479e-04	k: 858	n:1330000
KS ci ratio: 1.093235e-02	ci left: 8.766681e-02	ci right 8.863122e-02	k: 117237	n:1330000
GLDN   1330000 perm   968 sec   (1374 perm/sec)   p_kst 8.814812e-02   p_cons 6.451128e-04   p_joint 1.636090e-03

Joint ci ratio: 8.408221e-02	ci left: 1.551298e-03	ci right 1.688184e-03	k: 2169	n:1340000
Cons ci ratio: 1.334727e-01	ci left: 6.003424e-04	ci right 6.869142e-04	k: 861	n:1340000
KS ci ratio: 1.089045e-02	ci left: 8.768389e-02	ci right 8.864476e-02	k: 118139	n:1340000
GLDN   1340000 perm   982 sec   (1365 perm/sec)   p_kst 8.816343e-02   p_cons 6.425373e-04   p_joint 1.618657e-03

Joint ci ratio: 8.383157e-02	ci left: 1.549235e-03	ci right 1.685511e-03	k: 2182	n:1350000
Cons ci ratio: 1.332412e-01	ci left: 5.980434e-04	ci right 6.841223e-04	k: 864	n:1350000
KS ci ratio: 1.084917e-02	ci left: 8.769850e-02	ci right 8.865586e-02	k: 119038	n:1350000
GLDN   1350000 perm   994 sec   (1358 perm/sec)   p_kst 8.817630e-02   p_cons 6.400000e-04   p_joint 1.616296e-03

Joint ci ratio: 8.463186e-02	ci left: 1.508330e-03	ci right 1.642337e-03	k: 2141	n:1360000
Cons ci ratio: 1.328579e-01	ci left: 5.972001e-04	ci right 6.828908e-04	k: 869	n:1360000
KS ci ratio: 1.081078e-02	ci left: 8.767696e-02	ci right 8.863068e-02	k: 119888	n:1360000
GLDN   1360000 perm   1007 sec   (1351 perm/sec)   p_kst 8.815294e-02   p_cons 6.389706e-04   p_joint 1.574265e-03

Joint ci ratio: 8.437629e-02	ci left: 1.506608e-03	ci right 1.640038e-03	k: 2154	n:1370000
Cons ci ratio: 1.324778e-01	ci left: 5.963695e-04	ci right 6.816769e-04	k: 874	n:1370000
KS ci ratio: 1.077201e-02	ci left: 8.766739e-02	ci right 8.861757e-02	k: 120754	n:1370000
GLDN   1370000 perm   1020 sec   (1343 perm/sec)   p_kst 8.814161e-02   p_cons 6.379562e-04   p_joint 1.572263e-03

Joint ci ratio: 8.406479e-02	ci left: 1.507041e-03	ci right 1.639992e-03	k: 2170	n:1380000
Cons ci ratio: 1.321010e-01	ci left: 5.955512e-04	ci right 6.804803e-04	k: 879	n:1380000
KS ci ratio: 1.073303e-02	ci left: 8.766736e-02	ci right 8.861408e-02	k: 121633	n:1380000
GLDN   1380000 perm   1035 sec   (1333 perm/sec)   p_kst 8.813986e-02   p_cons 6.369565e-04   p_joint 1.572464e-03

Joint ci ratio: 8.617827e-02	ci left: 1.422265e-03	ci right 1.551050e-03	k: 2065	n:1390000
Cons ci ratio: 1.315787e-01	ci left: 5.961366e-04	ci right 6.807867e-04	k: 886	n:1390000
KS ci ratio: 1.069514e-02	ci left: 8.765729e-02	ci right 8.860054e-02	k: 122498	n:1390000
GLDN   1390000 perm   1048 sec   (1326 perm/sec)   p_kst 8.812806e-02   p_cons 6.374101e-04   p_joint 1.485612e-03

Joint ci ratio: 8.574341e-02	ci left: 1.426783e-03	ci right 1.555293e-03	k: 2086	n:1400000
Cons ci ratio: 1.311359e-01	ci left: 5.960234e-04	ci right 6.803504e-04	k: 892	n:1400000
KS ci ratio: 1.065774e-02	ci left: 8.764595e-02	ci right 8.858576e-02	k: 123361	n:1400000
GLDN   1400000 perm   1062 sec   (1319 perm/sec)   p_kst 8.811500e-02   p_cons 6.371429e-04   p_joint 1.490000e-03

Joint ci ratio: 8.545728e-02	ci left: 1.426381e-03	ci right 1.554404e-03	k: 2100	n:1410000
Cons ci ratio: 1.306976e-01	ci left: 5.959122e-04	ci right 6.799198e-04	k: 898	n:1410000
KS ci ratio: 1.061876e-02	ci left: 8.766449e-02	ci right 8.860104e-02	k: 124266	n:1410000
GLDN   1410000 perm   1075 sec   (1312 perm/sec)   p_kst 8.813191e-02   p_cons 6.368794e-04   p_joint 1.489362e-03

Joint ci ratio: 8.509345e-02	ci left: 1.428742e-03	ci right 1.556404e-03	k: 2118	n:1420000
Cons ci ratio: 1.297624e-01	ci left: 6.005724e-04	ci right 6.845846e-04	k: 911	n:1420000
KS ci ratio: 1.058178e-02	ci left: 8.765888e-02	ci right 8.859209e-02	k: 125137	n:1420000
GLDN   1420000 perm   1087 sec   (1306 perm/sec)   p_kst 8.812465e-02   p_cons 6.415493e-04   p_joint 1.491549e-03

Joint ci ratio: 8.622187e-02	ci left: 1.381111e-03	ci right 1.506237e-03	k: 2063	n:1430000
Cons ci ratio: 1.289867e-01	ci left: 6.038160e-04	ci right 6.877383e-04	k: 922	n:1430000
KS ci ratio: 1.054652e-02	ci left: 8.763313e-02	ci right 8.856294e-02	k: 125979	n:1430000
GLDN   1430000 perm   1100 sec   (1300 perm/sec)   p_kst 8.809720e-02   p_cons 6.447552e-04   p_joint 1.442657e-03

Joint ci ratio: 8.666494e-02	ci left: 1.357251e-03	ci right 1.480879e-03	k: 2042	n:1440000
Cons ci ratio: 1.286388e-01	ci left: 6.029832e-04	ci right 6.865464e-04	k: 927	n:1440000
KS ci ratio: 1.051170e-02	ci left: 8.760636e-02	ci right 8.853280e-02	k: 126819	n:1440000
GLDN   1440000 perm   1113 sec   (1294 perm/sec)   p_kst 8.806875e-02   p_cons 6.437500e-04   p_joint 1.418056e-03

Joint ci ratio: 8.672916e-02	ci left: 1.345867e-03	ci right 1.468553e-03	k: 2039	n:1450000
Cons ci ratio: 1.282937e-01	ci left: 6.021621e-04	ci right 6.853707e-04	k: 932	n:1450000
KS ci ratio: 1.047493e-02	ci left: 8.761505e-02	ci right 8.853832e-02	k: 127710	n:1450000
GLDN   1450000 perm   1126 sec   (1287 perm/sec)   p_kst 8.807586e-02   p_cons 6.427586e-04   p_joint 1.406207e-03

Joint ci ratio: 8.647525e-02	ci left: 1.344689e-03	ci right 1.466891e-03	k: 2051	n:1460000
Cons ci ratio: 1.277471e-01	ci left: 6.033417e-04	ci right 6.863312e-04	k: 940	n:1460000
KS ci ratio: 1.044041e-02	ci left: 8.759493e-02	ci right 8.851492e-02	k: 128559	n:1460000
GLDN   1460000 perm   1139 sec   (1281 perm/sec)   p_kst 8.805411e-02   p_cons 6.438356e-04   p_joint 1.404795e-03

Joint ci ratio: 8.808063e-02	ci left: 1.286299e-03	ci right 1.405476e-03	k: 1977	n:1470000
Cons ci ratio: 1.275441e-01	ci left: 6.012129e-04	ci right 6.837682e-04	k: 943	n:1470000
KS ci ratio: 1.040552e-02	ci left: 8.758595e-02	ci right 8.850275e-02	k: 129424	n:1470000
GLDN   1470000 perm   1153 sec   (1275 perm/sec)   p_kst 8.804354e-02   p_cons 6.414966e-04   p_joint 1.344898e-03

Joint ci ratio: 8.785892e-02	ci left: 1.284215e-03	ci right 1.402885e-03	k: 1987	n:1480000
Cons ci ratio: 1.273421e-01	ci left: 5.991130e-04	ci right 6.812398e-04	k: 946	n:1480000
KS ci ratio: 1.037150e-02	ci left: 8.756900e-02	ci right 8.848261e-02	k: 130277	n:1480000
GLDN   1480000 perm   1166 sec   (1269 perm/sec)   p_kst 8.802500e-02   p_cons 6.391892e-04   p_joint 1.342568e-03

Joint ci ratio: 8.882648e-02	ci left: 1.247374e-03	ci right 1.363974e-03	k: 1944	n:1490000
Cons ci ratio: 1.269406e-01	ci left: 5.989909e-04	ci right 6.808226e-04	k: 952	n:1490000
KS ci ratio: 1.033557e-02	ci left: 8.758710e-02	ci right 8.849772e-02	k: 131182	n:1490000
GLDN   1490000 perm   1179 sec   (1264 perm/sec)   p_kst 8.804161e-02   p_cons 6.389262e-04   p_joint 1.304698e-03

Joint ci ratio: 8.848588e-02	ci left: 1.248837e-03	ci right 1.365103e-03	k: 1959	n:1500000
Cons ci ratio: 1.264111e-01	ci left: 6.001620e-04	ci right 6.817860e-04	k: 960	n:1500000
KS ci ratio: 1.030254e-02	ci left: 8.756573e-02	ci right 8.847320e-02	k: 132028	n:1500000
GLDN   1500000 perm   1193 sec   (1258 perm/sec)   p_kst 8.801867e-02   p_cons 6.400000e-04   p_joint 1.306000e-03

Joint ci ratio: 9.071480e-02	ci left: 1.179060e-03	ci right 1.291741e-03	k: 1864	n:1510000
Cons ci ratio: 1.264113e-01	ci left: 5.961873e-04	ci right 6.772710e-04	k: 960	n:1510000
KS ci ratio: 1.027121e-02	ci left: 8.752284e-02	ci right 8.842709e-02	k: 132841	n:1510000
GLDN   1510000 perm   1206 sec   (1252 perm/sec)   p_kst 8.797417e-02   p_cons 6.357616e-04   p_joint 1.234437e-03

Joint ci ratio: 9.037617e-02	ci left: 1.180305e-03	ci right 1.292662e-03	k: 1878	n:1520000
Cons ci ratio: 1.259534e-01	ci left: 5.967250e-04	ci right 6.775658e-04	k: 967	n:1520000
KS ci ratio: 1.023715e-02	ci left: 8.752777e-02	ci right 8.842906e-02	k: 133726	n:1520000
GLDN   1520000 perm   1220 sec   (1246 perm/sec)   p_kst 8.797763e-02   p_cons 6.361842e-04   p_joint 1.235526e-03

Joint ci ratio: 8.071532e-02	ci left: 1.477076e-03	ci right 1.601947e-03	k: 2354	n:1530000
Cons ci ratio: 1.255004e-01	ci left: 5.972561e-04	ci right 6.778562e-04	k: 974	n:1530000
KS ci ratio: 1.020330e-02	ci left: 8.753461e-02	ci right 8.843297e-02	k: 134614	n:1530000
GLDN   1530000 perm   1233 sec   (1240 perm/sec)   p_kst 8.798301e-02   p_cons 6.366013e-04   p_joint 1.538562e-03

Joint ci ratio: 7.132088e-02	ci left: 1.887953e-03	ci right 2.028216e-03	k: 3014	n:1540000
Cons ci ratio: 1.247982e-01	ci left: 6.002971e-04	ci right 6.808209e-04	k: 985	n:1540000
KS ci ratio: 1.017229e-02	ci left: 8.750184e-02	ci right 8.839711e-02	k: 135441	n:1540000
GLDN   1540000 perm   1247 sec   (1235 perm/sec)   p_kst 8.794870e-02   p_cons 6.396104e-04   p_joint 1.957143e-03

Joint ci ratio: 7.109723e-02	ci left: 1.887813e-03	ci right 2.027607e-03	k: 3033	n:1550000
Cons ci ratio: 1.242324e-01	ci left: 6.020499e-04	ci right 6.824156e-04	k: 994	n:1550000
KS ci ratio: 1.013794e-02	ci left: 8.752678e-02	ci right 8.841927e-02	k: 136357	n:1550000
GLDN   1550000 perm   1261 sec   (1229 perm/sec)   p_kst 8.797226e-02   p_cons 6.412903e-04   p_joint 1.956774e-03

Joint ci ratio: 7.088730e-02	ci left: 1.887045e-03	ci right 2.026353e-03	k: 3051	n:1560000
Cons ci ratio: 1.238596e-01	ci left: 6.019174e-04	ci right 6.820066e-04	k: 1000	n:1560000
KS ci ratio: 1.010566e-02	ci left: 8.752391e-02	ci right 8.841352e-02	k: 137230	n:1560000
GLDN   1560000 perm   1275 sec   (1223 perm/sec)   p_kst 8.796795e-02   p_cons 6.410256e-04   p_joint 1.955769e-03

Joint ci ratio: 7.069075e-02	ci left: 1.885662e-03	ci right 2.024466e-03	k: 3068	n:1570000
Cons ci ratio: 1.234287e-01	ci left: 6.024042e-04	ci right 6.822590e-04	k: 1007	n:1570000
KS ci ratio: 1.007169e-02	ci left: 8.755286e-02	ci right 8.843975e-02	k: 138153	n:1570000
GLDN   1570000 perm   1289 sec   (1218 perm/sec)   p_kst 8.799554e-02   p_cons 6.414013e-04   p_joint 1.954140e-03

Joint ci ratio: 7.048439e-02	ci left: 1.884919e-03	ci right 2.023246e-03	k: 3086	n:1580000
Cons ci ratio: 1.229418e-01	ci left: 6.034988e-04	ci right 6.831602e-04	k: 1015	n:1580000
KS ci ratio: 1.003811e-02	ci left: 8.758081e-02	ci right 8.846501e-02	k: 139075	n:1580000
GLDN   1580000 perm   1303 sec   (1213 perm/sec)   p_kst 8.802215e-02   p_cons 6.424051e-04   p_joint 1.953165e-03

Joint ci ratio: 7.026849e-02	ci left: 1.884803e-03	ci right 2.022681e-03	k: 3105	n:1590000
Cons ci ratio: 1.228815e-01	ci left: 6.003128e-04	ci right 6.795119e-04	k: 1016	n:1590000
KS ci ratio: 1.000583e-02	ci left: 8.759273e-02	ci right 8.847418e-02	k: 139972	n:1590000
GLDN   1590000 perm   1317 sec   (1208 perm/sec)   p_kst 8.803270e-02   p_cons 6.389937e-04   p_joint 1.952830e-03

Joint ci ratio: 7.002089e-02	ci left: 1.886532e-03	ci right 2.024031e-03	k: 3127	n:1600000
Cons ci ratio: 1.224608e-01	ci left: 6.008016e-04	ci right 6.797741e-04	k: 1023	n:1600000
KS ci ratio: 9.974452e-03	ci left: 8.759515e-02	ci right 8.847385e-02	k: 140854	n:1600000
GLDN   1600000 perm   1331 sec   (1202 perm/sec)   p_kst 8.803375e-02   p_cons 6.393750e-04   p_joint 1.954375e-03

Joint ci ratio: 6.999890e-02	ci left: 1.876035e-03	ci right 2.012723e-03	k: 3129	n:1610000
Cons ci ratio: 1.218670e-01	ci left: 6.030913e-04	ci right 6.819528e-04	k: 1033	n:1610000
KS ci ratio: 9.942902e-03	ci left: 8.760498e-02	ci right 8.848098e-02	k: 141748	n:1610000
GLDN   1610000 perm   1345 sec   (1197 perm/sec)   p_kst 8.804224e-02   p_cons 6.416149e-04   p_joint 1.943478e-03

Joint ci ratio: 7.048609e-02	ci left: 1.838376e-03	ci right 1.973291e-03	k: 3086	n:1620000
Cons ci ratio: 1.215150e-01	ci left: 6.029595e-04	ci right 6.815596e-04	k: 1039	n:1620000
KS ci ratio: 9.910659e-03	ci left: 8.763070e-02	ci right 8.850411e-02	k: 142668	n:1620000
GLDN   1620000 perm   1359 sec   (1192 perm/sec)   p_kst 8.806667e-02   p_cons 6.413580e-04   p_joint 1.904938e-03

Joint ci ratio: 7.027018e-02	ci left: 1.838549e-03	ci right 1.973047e-03	k: 3105	n:1630000
Cons ci ratio: 1.211660e-01	ci left: 6.028296e-04	ci right 6.811709e-04	k: 1045	n:1630000
KS ci ratio: 9.881445e-03	ci left: 8.761204e-02	ci right 8.848267e-02	k: 143516	n:1630000
GLDN   1630000 perm   1374 sec   (1187 perm/sec)   p_kst 8.804663e-02   p_cons 6.411043e-04   p_joint 1.904908e-03

Joint ci ratio: 7.008994e-02	ci left: 1.836923e-03	ci right 1.970943e-03	k: 3121	n:1640000
Cons ci ratio: 1.209351e-01	ci left: 6.015189e-04	ci right 6.795303e-04	k: 1049	n:1640000
KS ci ratio: 9.851851e-03	ci left: 8.760396e-02	ci right 8.847189e-02	k: 144381	n:1640000
GLDN   1640000 perm   1388 sec   (1181 perm/sec)   p_kst 8.803720e-02   p_cons 6.396341e-04   p_joint 1.903049e-03

Joint ci ratio: 7.144435e-02	ci left: 1.756133e-03	ci right 1.886837e-03	k: 3004	n:1650000
Cons ci ratio: 1.204769e-01	ci left: 6.025755e-04	ci right 6.804067e-04	k: 1057	n:1650000
KS ci ratio: 9.821818e-03	ci left: 8.760747e-02	ci right 8.847277e-02	k: 145265	n:1650000
GLDN   1650000 perm   1403 sec   (1176 perm/sec)   p_kst 8.803939e-02   p_cons 6.406061e-04   p_joint 1.820606e-03

Joint ci ratio: 7.557555e-02	ci left: 1.556909e-03	ci right 1.679780e-03	k: 2685	n:1660000
Cons ci ratio: 1.201368e-01	ci left: 6.024512e-04	ci right 6.800310e-04	k: 1063	n:1660000
KS ci ratio: 9.792792e-03	ci left: 8.759891e-02	ci right 8.846156e-02	k: 146129	n:1660000
GLDN   1660000 perm   1417 sec   (1171 perm/sec)   p_kst 8.802952e-02   p_cons 6.403614e-04   p_joint 1.617470e-03

Joint ci ratio: 7.723529e-02	ci left: 1.480624e-03	ci right 1.600157e-03	k: 2571	n:1670000
Cons ci ratio: 1.198555e-01	ci left: 6.017478e-04	ci right 6.790428e-04	k: 1068	n:1670000
KS ci ratio: 9.763839e-03	ci left: 8.759346e-02	ci right 8.845348e-02	k: 146998	n:1670000
GLDN   1670000 perm   1432 sec   (1166 perm/sec)   p_kst 8.802275e-02   p_cons 6.395210e-04   p_joint 1.539521e-03

Joint ci ratio: 7.708570e-02	ci left: 1.477649e-03	ci right 1.596699e-03	k: 2581	n:1680000
Cons ci ratio: 1.196320e-01	ci left: 6.004756e-04	ci right 6.774532e-04	k: 1072	n:1680000
KS ci ratio: 9.735143e-03	ci left: 8.758807e-02	ci right 8.844550e-02	k: 147867	n:1680000
GLDN   1680000 perm   1446 sec   (1161 perm/sec)   p_kst 8.801607e-02   p_cons 6.380952e-04   p_joint 1.536310e-03

Joint ci ratio: 7.683314e-02	ci left: 1.478771e-03	ci right 1.597504e-03	k: 2598	n:1690000
Cons ci ratio: 1.191884e-01	ci left: 6.015149e-04	ci right 6.783196e-04	k: 1080	n:1690000
KS ci ratio: 9.705660e-03	ci left: 8.759987e-02	ci right 8.845480e-02	k: 148765	n:1690000
GLDN   1690000 perm   1461 sec   (1157 perm/sec)   p_kst 8.802663e-02   p_cons 6.390533e-04   p_joint 1.537278e-03

Joint ci ratio: 7.649524e-02	ci left: 1.483342e-03	ci right 1.601896e-03	k: 2621	n:1700000
Cons ci ratio: 1.186408e-01	ci left: 6.036840e-04	ci right 6.803867e-04	k: 1090	n:1700000
KS ci ratio: 9.676939e-03	ci left: 8.760331e-02	ci right 8.845574e-02	k: 149649	n:1700000
GLDN   1700000 perm   1476 sec   (1152 perm/sec)   p_kst 8.802882e-02   p_cons 6.411765e-04   p_joint 1.541765e-03

Joint ci ratio: 7.670094e-02	ci left: 1.466637e-03	ci right 1.584184e-03	k: 2607	n:1710000
Cons ci ratio: 1.182082e-01	ci left: 6.046934e-04	ci right 6.812247e-04	k: 1098	n:1710000
KS ci ratio: 9.648754e-03	ci left: 8.760206e-02	ci right 8.845197e-02	k: 150525	n:1710000
GLDN   1710000 perm   1491 sec   (1147 perm/sec)   p_kst 8.802632e-02   p_cons 6.421053e-04   p_joint 1.524561e-03

Joint ci ratio: 7.656908e-02	ci left: 1.463242e-03	ci right 1.580307e-03	k: 2616	n:1720000
Cons ci ratio: 1.178335e-01	ci left: 6.051274e-04	ci right 6.814539e-04	k: 1105	n:1720000
KS ci ratio: 9.621405e-03	ci left: 8.759095e-02	ci right 8.843834e-02	k: 151384	n:1720000
GLDN   1720000 perm   1505 sec   (1143 perm/sec)   p_kst 8.801395e-02   p_cons 6.424419e-04   p_joint 1.520930e-03

Joint ci ratio: 7.758555e-02	ci left: 1.416234e-03	ci right 1.531110e-03	k: 2548	n:1730000
Cons ci ratio: 1.175681e-01	ci left: 6.044346e-04	ci right 6.804901e-04	k: 1110	n:1730000
KS ci ratio: 9.593424e-03	ci left: 8.759440e-02	ci right 8.843935e-02	k: 152268	n:1730000
GLDN   1730000 perm   1520 sec   (1138 perm/sec)   p_kst 8.801618e-02   p_cons 6.416185e-04   p_joint 1.472832e-03

Joint ci ratio: 7.814044e-02	ci left: 1.387807e-03	ci right 1.501219e-03	k: 2512	n:1740000
Cons ci ratio: 1.173045e-01	ci left: 6.037500e-04	ci right 6.795372e-04	k: 1115	n:1740000
KS ci ratio: 9.565617e-03	ci left: 8.759896e-02	ci right 8.844149e-02	k: 153154	n:1740000
GLDN   1740000 perm   1535 sec   (1133 perm/sec)   p_kst 8.801954e-02   p_cons 6.408046e-04   p_joint 1.443678e-03

Joint ci ratio: 7.790826e-02	ci left: 1.388281e-03	ci right 1.501379e-03	k: 2527	n:1750000
Cons ci ratio: 1.169904e-01	ci left: 6.036281e-04	ci right 6.791831e-04	k: 1121	n:1750000
KS ci ratio: 9.536693e-03	ci left: 8.762628e-02	ci right 8.846651e-02	k: 154080	n:1750000
GLDN   1750000 perm   1550 sec   (1129 perm/sec)   p_kst 8.804571e-02   p_cons 6.405714e-04   p_joint 1.444000e-03

Joint ci ratio: 7.757129e-02	ci left: 1.392650e-03	ci right 1.505592e-03	k: 2549	n:1760000
Cons ci ratio: 1.164210e-01	ci left: 6.062660e-04	ci right 6.817564e-04	k: 1132	n:1760000
KS ci ratio: 9.507290e-03	ci left: 8.766577e-02	ci right 8.850377e-02	k: 155028	n:1760000
GLDN   1760000 perm   1565 sec   (1125 perm/sec)   p_kst 8.808409e-02   p_cons 6.431818e-04   p_joint 1.448295e-03

Joint ci ratio: 7.778574e-02	ci left: 1.377026e-03	ci right 1.489023e-03	k: 2535	n:1770000
Cons ci ratio: 1.161650e-01	ci left: 6.055835e-04	ci right 6.808117e-04	k: 1137	n:1770000
KS ci ratio: 9.479324e-03	ci left: 8.768508e-02	ci right 8.852079e-02	k: 155941	n:1770000
GLDN   1770000 perm   1581 sec   (1120 perm/sec)   p_kst 8.810226e-02   p_cons 6.423729e-04   p_joint 1.432203e-03

Joint ci ratio: 7.757192e-02	ci left: 1.377002e-03	ci right 1.488675e-03	k: 2549	n:1780000
Cons ci ratio: 1.159107e-01	ci left: 6.049088e-04	ci right 6.798774e-04	k: 1142	n:1780000
KS ci ratio: 9.452131e-03	ci left: 8.769521e-02	ci right 8.852860e-02	k: 156838	n:1780000
GLDN   1780000 perm   1596 sec   (1115 perm/sec)   p_kst 8.811124e-02   p_cons 6.415730e-04   p_joint 1.432022e-03

Joint ci ratio: 7.726937e-02	ci left: 1.380266e-03	ci right 1.491748e-03	k: 2569	n:1790000
Cons ci ratio: 1.152070e-01	ci left: 6.091246e-04	ci right 6.841263e-04	k: 1156	n:1790000
KS ci ratio: 9.427892e-03	ci left: 8.765896e-02	ci right 8.848986e-02	k: 157652	n:1790000
GLDN   1790000 perm   1611 sec   (1111 perm/sec)   p_kst 8.807374e-02   p_cons 6.458101e-04   p_joint 1.435196e-03

Joint ci ratio: 7.707471e-02	ci left: 1.379681e-03	ci right 1.490822e-03	k: 2582	n:1800000
Cons ci ratio: 1.147614e-01	ci left: 6.105968e-04	ci right 6.854694e-04	k: 1165	n:1800000
KS ci ratio: 9.402959e-03	ci left: 8.763808e-02	ci right 8.846657e-02	k: 158493	n:1800000
GLDN   1800000 perm   1627 sec   (1106 perm/sec)   p_kst 8.805167e-02   p_cons 6.472222e-04   p_joint 1.434444e-03

Joint ci ratio: 7.703023e-02	ci left: 1.373684e-03	ci right 1.484275e-03	k: 2585	n:1810000
Cons ci ratio: 1.144673e-01	ci left: 6.104432e-04	ci right 6.850921e-04	k: 1171	n:1810000
KS ci ratio: 9.377739e-03	ci left: 8.762571e-02	ci right 8.845185e-02	k: 159349	n:1810000
GLDN   1810000 perm   1642 sec   (1102 perm/sec)   p_kst 8.803812e-02   p_cons 6.469613e-04   p_joint 1.428177e-03

Joint ci ratio: 7.685218e-02	ci left: 1.372602e-03	ci right 1.482840e-03	k: 2597	n:1820000
Cons ci ratio: 1.141754e-01	ci left: 6.102916e-04	ci right 6.847188e-04	k: 1177	n:1820000
KS ci ratio: 9.352305e-03	ci left: 8.762060e-02	ci right 8.844444e-02	k: 160218	n:1820000
GLDN   1820000 perm   1658 sec   (1098 perm/sec)   p_kst 8.803187e-02   p_cons 6.467033e-04   p_joint 1.426923e-03

Joint ci ratio: 7.676376e-02	ci left: 1.368317e-03	ci right 1.478079e-03	k: 2603	n:1830000
Cons ci ratio: 1.136459e-01	ci left: 6.127964e-04	ci right 6.871593e-04	k: 1188	n:1830000
KS ci ratio: 9.327521e-03	ci left: 8.760792e-02	ci right 8.842945e-02	k: 161073	n:1830000
GLDN   1830000 perm   1674 sec   (1093 perm/sec)   p_kst 8.801803e-02   p_cons 6.491803e-04   p_joint 1.422404e-03

Joint ci ratio: 7.666094e-02	ci left: 1.364612e-03	ci right 1.473923e-03	k: 2610	n:1840000
Cons ci ratio: 1.135506e-01	ci left: 6.105220e-04	ci right 6.845426e-04	k: 1190	n:1840000
KS ci ratio: 9.301107e-03	ci left: 8.762684e-02	ci right 8.844620e-02	k: 161986	n:1840000
GLDN   1840000 perm   1689 sec   (1089 perm/sec)   p_kst 8.803587e-02   p_cons 6.467391e-04   p_joint 1.418478e-03

Joint ci ratio: 7.651465e-02	ci left: 1.362538e-03	ci right 1.471465e-03	k: 2620	n:1850000
Cons ci ratio: 1.133605e-01	ci left: 6.093227e-04	ci right 6.830659e-04	k: 1194	n:1850000
KS ci ratio: 9.275884e-03	ci left: 8.762883e-02	ci right 8.844598e-02	k: 162868	n:1850000
GLDN   1850000 perm   1705 sec   (1085 perm/sec)   p_kst 8.803676e-02   p_cons 6.454054e-04   p_joint 1.416216e-03

Joint ci ratio: 7.632562e-02	ci left: 1.362068e-03	ci right 1.470677e-03	k: 2633	n:1860000
Cons ci ratio: 1.129829e-01	ci left: 6.102261e-04	ci right 6.838162e-04	k: 1202	n:1860000
KS ci ratio: 9.251174e-03	ci left: 8.762544e-02	ci right 8.844036e-02	k: 163740	n:1860000
GLDN   1860000 perm   1721 sec   (1081 perm/sec)   p_kst 8.803226e-02   p_cons 6.462366e-04   p_joint 1.415591e-03

Joint ci ratio: 7.616681e-02	ci left: 1.360554e-03	ci right 1.468807e-03	k: 2644	n:1870000
Cons ci ratio: 1.129361e-01	ci left: 6.074824e-04	ci right 6.807094e-04	k: 1203	n:1870000
KS ci ratio: 9.226293e-03	ci left: 8.762849e-02	ci right 8.844124e-02	k: 164624	n:1870000
GLDN   1870000 perm   1737 sec   (1077 perm/sec)   p_kst 8.803422e-02   p_cons 6.433155e-04   p_joint 1.413904e-03

Joint ci ratio: 7.592315e-02	ci left: 1.362188e-03	ci right 1.470208e-03	k: 2661	n:1880000
Cons ci ratio: 1.126092e-01	ci left: 6.078695e-04	ci right 6.809170e-04	k: 1210	n:1880000
KS ci ratio: 9.202251e-03	ci left: 8.762036e-02	ci right 8.843091e-02	k: 165487	n:1880000
GLDN   1880000 perm   1753 sec   (1073 perm/sec)   p_kst 8.802500e-02   p_cons 6.436170e-04   p_joint 1.415426e-03

Joint ci ratio: 7.571013e-02	ci left: 1.362767e-03	ci right 1.470516e-03	k: 2676	n:1890000
Cons ci ratio: 1.124238e-01	ci left: 6.067101e-04	ci right 6.794902e-04	k: 1214	n:1890000
KS ci ratio: 9.177367e-03	ci left: 8.763028e-02	ci right 8.843871e-02	k: 166384	n:1890000
GLDN   1890000 perm   1769 sec   (1068 perm/sec)   p_kst 8.803386e-02   p_cons 6.423280e-04   p_joint 1.415873e-03

Joint ci ratio: 7.549889e-02	ci left: 1.363340e-03	ci right 1.470821e-03	k: 2691	n:1900000
Cons ci ratio: 1.121013e-01	ci left: 6.070977e-04	ci right 6.797015e-04	k: 1221	n:1900000
KS ci ratio: 9.153225e-03	ci left: 8.763064e-02	ci right 8.843694e-02	k: 167263	n:1900000
GLDN   1900000 perm   1785 sec   (1064 perm/sec)   p_kst 8.803316e-02   p_cons 6.426316e-04   p_joint 1.416316e-03

Joint ci ratio: 7.638514e-02	ci left: 1.324357e-03	ci right 1.430044e-03	k: 2629	n:1910000
Cons ci ratio: 1.119183e-01	ci left: 6.059547e-04	ci right 6.782958e-04	k: 1225	n:1910000
KS ci ratio: 9.128617e-03	ci left: 8.764249e-02	ci right 8.844672e-02	k: 168164	n:1910000
GLDN   1910000 perm   1801 sec   (1060 perm/sec)   p_kst 8.804398e-02   p_cons 6.413613e-04   p_joint 1.376440e-03

Joint ci ratio: 6.974260e-02	ci left: 1.585407e-03	ci right 1.700480e-03	k: 3153	n:1920000
Cons ci ratio: 1.114195e-01	ci left: 6.083679e-04	ci right 6.806521e-04	k: 1236	n:1920000
KS ci ratio: 9.104886e-03	ci left: 8.764227e-02	ci right 8.844439e-02	k: 169042	n:1920000
GLDN   1920000 perm   1818 sec   (1056 perm/sec)   p_kst 8.804271e-02   p_cons 6.437500e-04   p_joint 1.642187e-03

Joint ci ratio: 7.016756e-02	ci left: 1.557847e-03	ci right 1.671636e-03	k: 3115	n:1930000
Cons ci ratio: 1.111950e-01	ci left: 6.077342e-04	ci right 6.797882e-04	k: 1241	n:1930000
KS ci ratio: 9.081134e-03	ci left: 8.764567e-02	ci right 8.844572e-02	k: 169927	n:1930000
GLDN   1930000 perm   1834 sec   (1052 perm/sec)   p_kst 8.804508e-02   p_cons 6.430052e-04   p_joint 1.613990e-03

Joint ci ratio: 6.997692e-02	ci left: 1.558426e-03	ci right 1.671936e-03	k: 3132	n:1940000
Cons ci ratio: 1.109274e-01	ci left: 6.076085e-04	ci right 6.794628e-04	k: 1247	n:1940000
KS ci ratio: 9.058206e-03	ci left: 8.763772e-02	ci right 8.843567e-02	k: 170790	n:1940000
GLDN   1940000 perm   1851 sec   (1048 perm/sec)   p_kst 8.803608e-02   p_cons 6.427835e-04   p_joint 1.614433e-03

Joint ci ratio: 6.982113e-02	ci left: 1.557488e-03	ci right 1.670667e-03	k: 3146	n:1950000
Cons ci ratio: 1.107502e-01	ci left: 6.064869e-04	ci right 6.780865e-04	k: 1251	n:1950000
KS ci ratio: 9.035740e-03	ci left: 8.762474e-02	ci right 8.842059e-02	k: 171643	n:1950000
GLDN   1950000 perm   1867 sec   (1044 perm/sec)   p_kst 8.802205e-02   p_cons 6.415385e-04   p_joint 1.613333e-03

Joint ci ratio: 6.965534e-02	ci left: 1.557061e-03	ci right 1.669930e-03	k: 3161	n:1960000
Cons ci ratio: 1.105297e-01	ci left: 6.058730e-04	ci right 6.772485e-04	k: 1256	n:1960000
KS ci ratio: 9.012179e-03	ci left: 8.763430e-02	ci right 8.842814e-02	k: 172540	n:1960000
GLDN   1960000 perm   1884 sec   (1040 perm/sec)   p_kst 8.803061e-02   p_cons 6.408163e-04   p_joint 1.612755e-03

Joint ci ratio: 6.949073e-02	ci left: 1.556639e-03	ci right 1.669200e-03	k: 3176	n:1970000
Cons ci ratio: 1.100491e-01	ci left: 6.082273e-04	ci right 6.795483e-04	k: 1267	n:1970000
KS ci ratio: 8.989769e-03	ci left: 8.762654e-02	ci right 8.841833e-02	k: 173403	n:1970000
GLDN   1970000 perm   1900 sec   (1037 perm/sec)   p_kst 8.802183e-02   p_cons 6.431472e-04   p_joint 1.612183e-03

Joint ci ratio: 7.059000e-02	ci left: 1.500148e-03	ci right 1.610409e-03	k: 3078	n:1980000
Cons ci ratio: 1.097897e-01	ci left: 6.081024e-04	ci right 6.792299e-04	k: 1273	n:1980000
KS ci ratio: 8.965409e-03	ci left: 8.765666e-02	ci right 8.844657e-02	k: 174341	n:1980000
GLDN   1980000 perm   1917 sec   (1033 perm/sec)   p_kst 8.805101e-02   p_cons 6.429293e-04   p_joint 1.554545e-03

Joint ci ratio: 7.185169e-02	ci left: 1.439796e-03	ci right 1.547593e-03	k: 2971	n:1990000
Cons ci ratio: 1.094038e-01	ci left: 6.094453e-04	ci right 6.804632e-04	k: 1282	n:1990000
KS ci ratio: 8.943177e-03	ci left: 8.765188e-02	ci right 8.843977e-02	k: 175210	n:1990000
GLDN   1990000 perm   1934 sec   (1029 perm/sec)   p_kst 8.804523e-02   p_cons 6.442211e-04   p_joint 1.492965e-03

Joint ci ratio: 7.169510e-02	ci left: 1.438980e-03	ci right 1.546471e-03	k: 2984	n:2000000
Cons ci ratio: 1.091489e-01	ci left: 6.093161e-04	ci right 6.801428e-04	k: 1288	n:2000000
KS ci ratio: 8.921304e-03	ci left: 8.764365e-02	ci right 8.842954e-02	k: 176072	n:2000000
GLDN   2000000 perm   1951 sec   (1025 perm/sec)   p_kst 8.803600e-02   p_cons 6.440000e-04   p_joint 1.492000e-03

Joint ci ratio: 7.145602e-02	ci left: 1.441594e-03	ci right 1.548906e-03	k: 3004	n:2010000
Cons ci ratio: 1.088958e-01	ci left: 6.091883e-04	ci right 6.798255e-04	k: 1294	n:2010000
KS ci ratio: 8.900693e-03	ci left: 8.761565e-02	ci right 8.839946e-02	k: 176894	n:2010000
GLDN   2010000 perm   1968 sec   (1021 perm/sec)   p_kst 8.800697e-02   p_cons 6.437811e-04   p_joint 1.494527e-03

Joint ci ratio: 6.742957e-02	ci left: 1.613966e-03	ci right 1.727075e-03	k: 3373	n:2020000
Cons ci ratio: 1.084777e-01	ci left: 6.109885e-04	ci right 6.815450e-04	k: 1304	n:2020000
KS ci ratio: 8.879239e-03	ci left: 8.760572e-02	ci right 8.838754e-02	k: 177752	n:2020000
GLDN   2020000 perm   1986 sec   (1017 perm/sec)   p_kst 8.799604e-02   p_cons 6.455446e-04   p_joint 1.669802e-03

Joint ci ratio: 6.727027e-02	ci left: 1.613764e-03	ci right 1.726581e-03	k: 3389	n:2030000
Cons ci ratio: 1.082705e-01	ci left: 6.103750e-04	ci right 6.807174e-04	k: 1309	n:2030000
KS ci ratio: 8.857232e-03	ci left: 8.760867e-02	ci right 8.838857e-02	k: 178636	n:2030000
GLDN   2030000 perm   2003 sec   (1014 perm/sec)   p_kst 8.799803e-02   p_cons 6.448276e-04   p_joint 1.669458e-03

Joint ci ratio: 6.705296e-02	ci left: 1.616457e-03	ci right 1.729083e-03	k: 3411	n:2040000
Cons ci ratio: 1.079414e-01	ci left: 6.111985e-04	ci right 6.814081e-04	k: 1317	n:2040000
KS ci ratio: 8.836144e-03	ci left: 8.759789e-02	ci right 8.837583e-02	k: 179492	n:2040000
GLDN   2040000 perm   2020 sec   (1010 perm/sec)   p_kst 8.798627e-02   p_cons 6.455882e-04   p_joint 1.672059e-03

Joint ci ratio: 6.689631e-02	ci left: 1.616246e-03	ci right 1.728584e-03	k: 3427	n:2050000
Cons ci ratio: 1.078188e-01	ci left: 6.096409e-04	ci right 6.795871e-04	k: 1320	n:2050000
KS ci ratio: 8.813866e-03	ci left: 8.761156e-02	ci right 8.838765e-02	k: 180398	n:2050000
GLDN   2050000 perm   2037 sec   (1006 perm/sec)   p_kst 8.799902e-02   p_cons 6.439024e-04   p_joint 1.671707e-03

Joint ci ratio: 6.672134e-02	ci left: 1.616992e-03	ci right 1.729077e-03	k: 3445	n:2060000
Cons ci ratio: 1.076154e-01	ci left: 6.090433e-04	ci right 6.787807e-04	k: 1325	n:2060000
KS ci ratio: 8.793218e-03	ci left: 8.759846e-02	ci right 8.837260e-02	k: 181249	n:2060000
GLDN   2060000 perm   2054 sec   (1003 perm/sec)   p_kst 8.798495e-02   p_cons 6.432039e-04   p_joint 1.672330e-03

Joint ci ratio: 6.669254e-02	ci left: 1.610605e-03	ci right 1.722197e-03	k: 3448	n:2070000
Cons ci ratio: 1.073727e-01	ci left: 6.089217e-04	ci right 6.784780e-04	k: 1331	n:2070000
KS ci ratio: 8.772662e-03	ci left: 8.758645e-02	ci right 8.835867e-02	k: 182102	n:2070000
GLDN   2070000 perm   2071 sec   (999 perm/sec)   p_kst 8.797198e-02   p_cons 6.429952e-04   p_joint 1.665700e-03

Joint ci ratio: 6.654801e-02	ci left: 1.609953e-03	ci right 1.721249e-03	k: 3463	n:2080000
Cons ci ratio: 1.069320e-01	ci left: 6.111409e-04	ci right 6.806462e-04	k: 1342	n:2080000
KS ci ratio: 8.751305e-03	ci left: 8.759183e-02	ci right 8.836221e-02	k: 182991	n:2080000
GLDN   2080000 perm   2089 sec   (996 perm/sec)   p_kst 8.797644e-02   p_cons 6.451923e-04   p_joint 1.664904e-03

Joint ci ratio: 6.641398e-02	ci left: 1.608837e-03	ci right 1.719824e-03	k: 3477	n:2090000
Cons ci ratio: 1.066149e-01	ci left: 6.119424e-04	ci right 6.813194e-04	k: 1350	n:2090000
KS ci ratio: 8.731640e-03	ci left: 8.756898e-02	ci right 8.833742e-02	k: 183821	n:2090000
GLDN   2090000 perm   2106 sec   (992 perm/sec)   p_kst 8.795263e-02   p_cons 6.459330e-04   p_joint 1.663636e-03

Joint ci ratio: 6.626175e-02	ci left: 1.608669e-03	ci right 1.719379e-03	k: 3493	n:2100000
Cons ci ratio: 1.063397e-01	ci left: 6.122729e-04	ci right 6.814971e-04	k: 1357	n:2100000
KS ci ratio: 8.711486e-03	ci left: 8.755777e-02	ci right 8.832432e-02	k: 184675	n:2100000
GLDN   2100000 perm   2123 sec   (989 perm/sec)   p_kst 8.794048e-02   p_cons 6.461905e-04   p_joint 1.663333e-03

Joint ci ratio: 6.608229e-02	ci left: 1.609901e-03	ci right 1.720384e-03	k: 3512	n:2110000
Cons ci ratio: 1.060667e-01	ci left: 6.126006e-04	ci right 6.816729e-04	k: 1364	n:2110000
KS ci ratio: 8.691496e-03	ci left: 8.754618e-02	ci right 8.831087e-02	k: 185528	n:2110000
GLDN   2110000 perm   2141 sec   (986 perm/sec)   p_kst 8.792796e-02   p_cons 6.464455e-04   p_joint 1.664455e-03

Joint ci ratio: 6.595104e-02	ci left: 1.608802e-03	ci right 1.718982e-03	k: 3526	n:2120000
Cons ci ratio: 1.058730e-01	ci left: 6.120069e-04	ci right 6.808784e-04	k: 1369	n:2120000
KS ci ratio: 8.671031e-03	ci left: 8.754601e-02	ci right 8.830889e-02	k: 186405	n:2120000
GLDN   2120000 perm   2158 sec   (982 perm/sec)   p_kst 8.792689e-02   p_cons 6.457547e-04   p_joint 1.663208e-03

Joint ci ratio: 6.583921e-02	ci left: 1.606789e-03	ci right 1.716638e-03	k: 3538	n:2130000
Cons ci ratio: 1.056036e-01	ci left: 6.123331e-04	ci right 6.810551e-04	k: 1376	n:2130000
KS ci ratio: 8.650027e-03	ci left: 8.755849e-02	ci right 8.831962e-02	k: 187309	n:2130000
GLDN   2130000 perm   2176 sec   (979 perm/sec)   p_kst 8.793850e-02   p_cons 6.460094e-04   p_joint 1.661033e-03

Joint ci ratio: 6.574649e-02	ci left: 1.603877e-03	ci right 1.713367e-03	k: 3548	n:2140000
Cons ci ratio: 1.054888e-01	ci left: 6.108366e-04	ci right 6.793115e-04	k: 1379	n:2140000
KS ci ratio: 8.630708e-03	ci left: 8.754241e-02	ci right 8.830169e-02	k: 188152	n:2140000
GLDN   2140000 perm   2193 sec   (976 perm/sec)   p_kst 8.792150e-02   p_cons 6.443925e-04   p_joint 1.657944e-03

Joint ci ratio: 6.562646e-02	ci left: 1.602364e-03	ci right 1.711543e-03	k: 3561	n:2150000
Cons ci ratio: 1.052223e-01	ci left: 6.111655e-04	ci right 6.794934e-04	k: 1386	n:2150000
KS ci ratio: 8.610618e-03	ci left: 8.754319e-02	ci right 8.830071e-02	k: 189031	n:2150000
GLDN   2150000 perm   2211 sec   (972 perm/sec)   p_kst 8.792140e-02   p_cons 6.446512e-04   p_joint 1.656279e-03

Joint ci ratio: 6.695788e-02	ci left: 1.531203e-03	ci right 1.637733e-03	k: 3421	n:2160000
Cons ci ratio: 1.049577e-01	ci left: 6.114916e-04	ci right 6.796735e-04	k: 1393	n:2160000
KS ci ratio: 8.590594e-03	ci left: 8.754536e-02	ci right 8.830112e-02	k: 189913	n:2160000
GLDN   2160000 perm   2229 sec   (969 perm/sec)   p_kst 8.792269e-02   p_cons 6.449074e-04   p_joint 1.583796e-03

Joint ci ratio: 6.685059e-02	ci left: 1.529131e-03	ci right 1.635339e-03	k: 3432	n:2170000
Cons ci ratio: 1.046952e-01	ci left: 6.118149e-04	ci right 6.798517e-04	k: 1400	n:2170000
KS ci ratio: 8.571079e-03	ci left: 8.754060e-02	ci right 8.829460e-02	k: 190780	n:2170000
GLDN   2170000 perm   2246 sec   (966 perm/sec)   p_kst 8.791705e-02   p_cons 6.451613e-04   p_joint 1.581567e-03

Joint ci ratio: 6.674382e-02	ci left: 1.527079e-03	ci right 1.632968e-03	k: 3443	n:2180000
Cons ci ratio: 1.045089e-01	ci left: 6.112420e-04	ci right 6.790867e-04	k: 1405	n:2180000
KS ci ratio: 8.552381e-03	ci left: 8.752308e-02	ci right 8.827527e-02	k: 191619	n:2180000
GLDN   2180000 perm   2264 sec   (963 perm/sec)   p_kst 8.789862e-02   p_cons 6.444954e-04   p_joint 1.579358e-03

Joint ci ratio: 6.647396e-02	ci left: 1.532678e-03	ci right 1.638510e-03	k: 3471	n:2190000
Cons ci ratio: 1.041759e-01	ci left: 6.124533e-04	ci right 6.802026e-04	k: 1414	n:2190000
KS ci ratio: 8.532152e-03	ci left: 8.753670e-02	ci right 8.828722e-02	k: 192526	n:2190000
GLDN   2190000 perm   2282 sec   (960 perm/sec)   p_kst 8.791142e-02   p_cons 6.456621e-04   p_joint 1.584932e-03

Joint ci ratio: 6.631180e-02	ci left: 1.533311e-03	ci right 1.638917e-03	k: 3488	n:2200000
Cons ci ratio: 1.038826e-01	ci left: 6.132112e-04	ci right 6.808417e-04	k: 1422	n:2200000
KS ci ratio: 8.512886e-03	ci left: 8.753478e-02	ci right 8.828358e-02	k: 193399	n:2200000
GLDN   2200000 perm   2300 sec   (956 perm/sec)   p_kst 8.790864e-02   p_cons 6.463636e-04   p_joint 1.585455e-03

Joint ci ratio: 6.619812e-02	ci left: 1.531712e-03	ci right 1.637021e-03	k: 3500	n:2210000
Cons ci ratio: 1.036281e-01	ci left: 6.135217e-04	ci right 6.810106e-04	k: 1429	n:2210000
KS ci ratio: 8.494206e-03	ci left: 8.752430e-02	ci right 8.827135e-02	k: 194253	n:2210000
GLDN   2210000 perm   2318 sec   (953 perm/sec)   p_kst 8.789729e-02   p_cons 6.466063e-04   p_joint 1.583710e-03

Joint ci ratio: 6.606618e-02	ci left: 1.531015e-03	ci right 1.636058e-03	k: 3514	n:2220000
Cons ci ratio: 1.033753e-01	ci left: 6.138296e-04	ci right 6.811777e-04	k: 1436	n:2220000
KS ci ratio: 8.475338e-03	ci left: 8.751975e-02	ci right 8.826511e-02	k: 195120	n:2220000
GLDN   2220000 perm   2337 sec   (950 perm/sec)   p_kst 8.789189e-02   p_cons 6.468468e-04   p_joint 1.582883e-03

Joint ci ratio: 6.583235e-02	ci left: 1.535175e-03	ci right 1.640117e-03	k: 3539	n:2230000
Cons ci ratio: 1.029107e-01	ci left: 6.167563e-04	ci right 6.841030e-04	k: 1449	n:2230000
KS ci ratio: 8.455981e-03	ci left: 8.752689e-02	ci right 8.827059e-02	k: 196013	n:2230000
GLDN   2230000 perm   2356 sec   (947 perm/sec)   p_kst 8.789821e-02   p_cons 6.497758e-04   p_joint 1.586996e-03

Joint ci ratio: 6.597273e-02	ci left: 1.521735e-03	ci right 1.625989e-03	k: 3524	n:2240000
Cons ci ratio: 1.025576e-01	ci left: 6.183525e-04	ci right 6.856278e-04	k: 1459	n:2240000
KS ci ratio: 8.438236e-03	ci left: 8.750589e-02	ci right 8.824785e-02	k: 196843	n:2240000
GLDN   2240000 perm   2374 sec   (943 perm/sec)   p_kst 8.787634e-02   p_cons 6.513393e-04   p_joint 1.573214e-03

Joint ci ratio: 6.586077e-02	ci left: 1.520217e-03	ci right 1.624183e-03	k: 3536	n:2250000
Cons ci ratio: 1.023825e-01	ci left: 6.177696e-04	ci right 6.848598e-04	k: 1464	n:2250000
KS ci ratio: 8.419925e-03	ci left: 8.749795e-02	ci right 8.823822e-02	k: 197702	n:2250000
GLDN   2250000 perm   2393 sec   (940 perm/sec)   p_kst 8.786756e-02   p_cons 6.506667e-04   p_joint 1.571556e-03

Joint ci ratio: 6.573084e-02	ci left: 1.519584e-03	ci right 1.623293e-03	k: 3550	n:2260000
Cons ci ratio: 1.020348e-01	ci left: 6.193478e-04	ci right 6.863672e-04	k: 1474	n:2260000
KS ci ratio: 8.402080e-03	ci left: 8.748345e-02	ci right 8.822203e-02	k: 198546	n:2260000
GLDN   2260000 perm   2412 sec   (937 perm/sec)   p_kst 8.785221e-02   p_cons 6.522124e-04   p_joint 1.570796e-03

Joint ci ratio: 6.563856e-02	ci left: 1.517222e-03	ci right 1.620620e-03	k: 3560	n:2270000
Cons ci ratio: 1.018968e-01	ci left: 6.183365e-04	ci right 6.851507e-04	k: 1478	n:2270000
KS ci ratio: 8.383427e-03	ci left: 8.748668e-02	ci right 8.822363e-02	k: 199430	n:2270000
GLDN   2270000 perm   2431 sec   (934 perm/sec)   p_kst 8.785463e-02   p_cons 6.511013e-04   p_joint 1.568282e-03

Joint ci ratio: 6.648564e-02	ci left: 1.471745e-03	ci right 1.573387e-03	k: 3470	n:2280000
Cons ci ratio: 1.015198e-01	ci left: 6.203264e-04	ci right 6.870928e-04	k: 1489	n:2280000
KS ci ratio: 8.364623e-03	ci left: 8.749512e-02	ci right 8.823049e-02	k: 200326	n:2280000
GLDN   2280000 perm   2450 sec   (931 perm/sec)   p_kst 8.786228e-02   p_cons 6.530702e-04   p_joint 1.521930e-03

Joint ci ratio: 6.638060e-02	ci left: 1.470042e-03	ci right 1.571400e-03	k: 3481	n:2290000
Cons ci ratio: 1.011808e-01	ci left: 6.218737e-04	ci right 6.885698e-04	k: 1499	n:2290000
KS ci ratio: 8.345921e-03	ci left: 8.750393e-02	ci right 8.823772e-02	k: 201223	n:2290000
GLDN   2290000 perm   2469 sec   (927 perm/sec)   p_kst 8.787031e-02   p_cons 6.545852e-04   p_joint 1.520087e-03

Joint ci ratio: 6.814811e-02	ci left: 1.387558e-03	ci right 1.485878e-03	k: 3303	n:2300000
Cons ci ratio: 1.008451e-01	ci left: 6.234079e-04	ci right 6.900337e-04	k: 1509	n:2300000
KS ci ratio: 8.327436e-03	ci left: 8.751094e-02	ci right 8.824315e-02	k: 202116	n:2300000
GLDN   2300000 perm   2489 sec   (924 perm/sec)   p_kst 8.787652e-02   p_cons 6.560870e-04   p_joint 1.436087e-03

Joint ci ratio: 6.797342e-02	ci left: 1.388786e-03	ci right 1.486930e-03	k: 3320	n:2310000
Cons ci ratio: 1.006454e-01	ci left: 6.232411e-04	ci right 6.897093e-04	k: 1515	n:2310000
KS ci ratio: 8.308893e-03	ci left: 8.752133e-02	ci right 8.825199e-02	k: 203017	n:2310000
GLDN   2310000 perm   2508 sec   (921 perm/sec)   p_kst 8.788615e-02   p_cons 6.558442e-04   p_joint 1.437229e-03

Joint ci ratio: 6.781024e-02	ci left: 1.389579e-03	ci right 1.487534e-03	k: 3336	n:2320000
Cons ci ratio: 1.004468e-01	ci left: 6.230759e-04	ci right 6.893877e-04	k: 1521	n:2320000
KS ci ratio: 8.290272e-03	ci left: 8.753552e-02	ci right 8.826465e-02	k: 203927	n:2320000
GLDN   2320000 perm   2528 sec   (918 perm/sec)   p_kst 8.789957e-02   p_cons 6.556034e-04   p_joint 1.437931e-03

Joint ci ratio: 6.765834e-02	ci left: 1.389944e-03	ci right 1.487697e-03	k: 3351	n:2330000
Cons ci ratio: 1.002823e-01	ci left: 6.224938e-04	ci right 6.886287e-04	k: 1526	n:2330000
KS ci ratio: 8.272418e-03	ci left: 8.753716e-02	ci right 8.826473e-02	k: 204808	n:2330000
GLDN   2330000 perm   2547 sec   (915 perm/sec)   p_kst 8.790043e-02   p_cons 6.549356e-04   p_joint 1.438197e-03

Joint ci ratio: 6.753759e-02	ci left: 1.389046e-03	ci right 1.486554e-03	k: 3363	n:2340000
Cons ci ratio: 9.998798e-02	ci left: 6.235834e-04	ci right 6.896283e-04	k: 1535	n:2340000
KS ci ratio: 8.254372e-03	ci left: 8.754476e-02	ci right 8.827079e-02	k: 205703	n:2340000
GLDN   2340000 perm   2567 sec   (912 perm/sec)   p_kst 8.790726e-02   p_cons 6.559829e-04   p_joint 1.437179e-03

Outputting figure to mutsig2_images.part000000000071/GLDN.4_1696_2340000_0.087907_0.00065598_0.0014372.png
                gene_name: GLDN
               theta_stop: 0.100 
                    nperm: 2340000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.00066 
      ci_cons_bounds_left: 0.00062 
     ci_cons_bounds_right: 0.00069 
                  p_joint: 0.0014 
     ci_joint_bounds_left: 0.0014 
    ci_joint_bounds_right: 0.0015 

Current progress: 33 percent done.
GLG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.991251e-02	ci left: 7.868508e-01	ci right 8.027771e-01	k: 7949	n:10000
KS ci ratio: 2.443843e-02	ci left: 7.111875e-01	ci right 7.288841e-01	k: 7201	n:10000
GLG1   10000 perm   2 sec   (4965 perm/sec)   p_kst 7.201000e-01   p_cons 7.949000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLG1.4_3724_10000_0.7201_0.7949_1.png
                gene_name: GLG1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
GLI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.066371e-02	ci left: 4.717634e-01	ci right 4.914473e-01	k: 4816	n:10000
KS ci ratio: 1.408530e-02	ci left: 8.793013e-01	ci right 8.918731e-01	k: 8857	n:10000
GLI1   10000 perm   2 sec   (5199 perm/sec)   p_kst 8.857000e-01   p_cons 4.816000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLI1.4_3365_10000_0.8857_0.4816_1.png
                gene_name: GLI1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
GLI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.730385e-02	ci left: 5.148561e-01	ci right 5.345295e-01	k: 5247	n:10000
Cons ci ratio: 8.417885e-02	ci left: 1.706458e-01	ci right 1.857422e-01	k: 1781	n:10000
KS ci ratio: 1.285176e-02	ci left: 8.970314e-01	ci right 9.087327e-01	k: 9030	n:10000
GLI2   10000 perm   2 sec   (4702 perm/sec)   p_kst 9.030000e-01   p_cons 1.781000e-01   p_joint 5.247000e-01

Outputting figure to mutsig2_images.part000000000071/GLI2.4_4813_10000_0.903_0.1781_0.5247.png
                gene_name: GLI2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 38 percent done.
GLUL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.351152e-02	ci left: 5.679478e-01	ci right 5.874070e-01	k: 5777	n:10000
Cons ci ratio: 2.777056e-02	ci left: 6.564574e-01	ci right 6.750460e-01	k: 6658	n:10000
KS ci ratio: 4.478554e-02	ci left: 4.239572e-01	ci right 4.434814e-01	k: 4337	n:10000
GLUL   10000 perm   2 sec   (5931 perm/sec)   p_kst 4.337000e-01   p_cons 6.658000e-01   p_joint 5.777000e-01

Outputting figure to mutsig2_images.part000000000071/GLUL.4_1146_10000_0.4337_0.6658_0.5777.png
                gene_name: GLUL
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 39 percent done.
GLYR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.739975e-01	ci left: 4.408409e-02	ci right 5.258151e-02	k: 482	n:10000
Cons ci ratio: 5.177092e-01	ci left: 4.232871e-03	ci right 7.265981e-03	k: 56	n:10000
KS ci ratio: 2.606481e-02	ci left: 6.842576e-01	ci right 7.024297e-01	k: 6934	n:10000
GLYR1   10000 perm   2 sec   (5746 perm/sec)   p_kst 6.934000e-01   p_cons 5.600000e-03   p_joint 4.820000e-02

Joint ci ratio: 1.319696e-01	ci left: 3.945544e-02	ci right 4.507862e-02	k: 844	n:20000
Cons ci ratio: 3.660847e-01	ci left: 4.658600e-03	ci right 6.788973e-03	k: 113	n:20000
KS ci ratio: 1.861122e-02	ci left: 6.827839e-01	ci right 6.956611e-01	k: 13785	n:20000
GLYR1   20000 perm   4 sec   (5189 perm/sec)   p_kst 6.892500e-01   p_cons 5.650000e-03   p_joint 4.220000e-02

Joint ci ratio: 1.213745e-01	ci left: 3.155716e-02	ci right 3.566714e-02	k: 1007	n:30000
Cons ci ratio: 2.980342e-01	ci left: 4.879595e-03	ci right 6.618225e-03	k: 171	n:30000
KS ci ratio: 1.527838e-02	ci left: 6.816511e-01	ci right 6.921793e-01	k: 20608	n:30000
GLYR1   30000 perm   6 sec   (4951 perm/sec)   p_kst 6.869333e-01   p_cons 5.700000e-03   p_joint 3.356667e-02

Joint ci ratio: 1.053982e-01	ci left: 3.166062e-02	ci right 3.520754e-02	k: 1336	n:40000
Cons ci ratio: 2.571681e-01	ci left: 5.032596e-03	ci right 6.540513e-03	k: 230	n:40000
KS ci ratio: 1.328258e-02	ci left: 6.806981e-01	ci right 6.898250e-01	k: 27411	n:40000
GLYR1   40000 perm   8 sec   (4785 perm/sec)   p_kst 6.852750e-01   p_cons 5.750000e-03   p_joint 3.340000e-02

Joint ci ratio: 1.011526e-01	ci left: 2.768309e-02	ci right 3.065191e-02	k: 1457	n:50000
Cons ci ratio: 2.295195e-01	ci left: 5.134365e-03	ci right 6.483983e-03	k: 289	n:50000
KS ci ratio: 1.188571e-02	ci left: 6.809880e-01	ci right 6.891505e-01	k: 34254	n:50000
GLYR1   50000 perm   11 sec   (4659 perm/sec)   p_kst 6.850800e-01   p_cons 5.780000e-03   p_joint 2.914000e-02

Joint ci ratio: 9.020044e-02	ci left: 2.913848e-02	ci right 3.190717e-02	k: 1830	n:60000
Cons ci ratio: 2.086195e-01	ci left: 5.239661e-03	ci right 6.475539e-03	k: 350	n:60000
KS ci ratio: 1.086640e-02	ci left: 6.806975e-01	ci right 6.881513e-01	k: 41066	n:60000
GLYR1   60000 perm   13 sec   (4557 perm/sec)   p_kst 6.844333e-01   p_cons 5.833333e-03   p_joint 3.050000e-02

Joint ci ratio: 8.773323e-02	ci left: 2.651071e-02	ci right 2.895722e-02	k: 1940	n:70000
Cons ci ratio: 1.935012e-01	ci left: 5.264483e-03	ci right 6.405637e-03	k: 407	n:70000
KS ci ratio: 1.003153e-02	ci left: 6.822175e-01	ci right 6.891100e-01	k: 47997	n:70000
GLYR1   70000 perm   16 sec   (4466 perm/sec)   p_kst 6.856714e-01   p_cons 5.814286e-03   p_joint 2.771429e-02

Joint ci ratio: 8.349647e-02	ci left: 2.569183e-02	ci right 2.794266e-02	k: 2144	n:80000
Cons ci ratio: 1.793261e-01	ci left: 5.404921e-03	ci right 6.481383e-03	k: 474	n:80000
KS ci ratio: 9.394180e-03	ci left: 6.819562e-01	ci right 6.884053e-01	k: 54815	n:80000
GLYR1   80000 perm   18 sec   (4383 perm/sec)   p_kst 6.851875e-01   p_cons 5.925000e-03   p_joint 2.680000e-02

Joint ci ratio: 7.601482e-02	ci left: 2.760795e-02	ci right 2.980034e-02	k: 2582	n:90000
Cons ci ratio: 1.684964e-01	ci left: 5.473942e-03	ci right 6.491628e-03	k: 537	n:90000
KS ci ratio: 8.863969e-03	ci left: 6.817978e-01	ci right 6.878792e-01	k: 61636	n:90000
GLYR1   90000 perm   21 sec   (4299 perm/sec)   p_kst 6.848444e-01   p_cons 5.966667e-03   p_joint 2.868889e-02

Joint ci ratio: 7.754077e-02	ci left: 2.395284e-02	ci right 2.589485e-02	k: 2491	n:100000
Cons ci ratio: 1.602247e-01	ci left: 5.473112e-03	ci right 6.435883e-03	k: 594	n:100000
KS ci ratio: 8.415426e-03	ci left: 6.816294e-01	ci right 6.873998e-01	k: 68452	n:100000
GLYR1   100000 perm   24 sec   (4223 perm/sec)   p_kst 6.845200e-01   p_cons 5.940000e-03   p_joint 2.491000e-02

Joint ci ratio: 4.702476e-02	ci left: 5.801923e-02	ci right 6.082223e-02	k: 6535	n:110000
Cons ci ratio: 1.443046e-01	ci left: 6.182580e-03	ci right 7.152797e-03	k: 732	n:110000
KS ci ratio: 8.020455e-03	ci left: 6.819448e-01	ci right 6.874454e-01	k: 75317	n:110000
GLYR1   110000 perm   27 sec   (4149 perm/sec)   p_kst 6.847000e-01   p_cons 6.654545e-03   p_joint 5.940909e-02

Joint ci ratio: 4.461241e-02	ci left: 5.909983e-02	ci right 6.180479e-02	k: 7253	n:120000
Cons ci ratio: 1.372686e-01	ci left: 6.286461e-03	ci right 7.220948e-03	k: 809	n:120000
KS ci ratio: 7.675003e-03	ci left: 6.822880e-01	ci right 6.875530e-01	k: 82191	n:120000
GLYR1   120000 perm   29 sec   (4080 perm/sec)   p_kst 6.849250e-01   p_cons 6.741667e-03   p_joint 6.044167e-02

Joint ci ratio: 4.261602e-02	ci left: 5.980397e-02	ci right 6.241565e-02	k: 7943	n:130000
Cons ci ratio: 1.322252e-01	ci left: 6.271165e-03	ci right 7.166436e-03	k: 872	n:130000
KS ci ratio: 7.375123e-03	ci left: 6.823205e-01	ci right 6.873790e-01	k: 89031	n:130000
GLYR1   130000 perm   32 sec   (4017 perm/sec)   p_kst 6.848538e-01   p_cons 6.707692e-03   p_joint 6.110000e-02

Joint ci ratio: 4.175391e-02	ci left: 5.799057e-02	ci right 6.047058e-02	k: 8291	n:140000
Cons ci ratio: 1.274942e-01	ci left: 6.279342e-03	ci right 7.141279e-03	k: 938	n:140000
KS ci ratio: 7.101151e-03	ci left: 6.827598e-01	ci right 6.876325e-01	k: 95928	n:140000
GLYR1   140000 perm   35 sec   (3954 perm/sec)   p_kst 6.852000e-01   p_cons 6.700000e-03   p_joint 5.922143e-02

Joint ci ratio: 3.959099e-02	ci left: 6.013085e-02	ci right 6.256614e-02	k: 9201	n:150000
Cons ci ratio: 1.238591e-01	ci left: 6.222305e-03	ci right 7.050272e-03	k: 994	n:150000
KS ci ratio: 6.866727e-03	ci left: 6.824420e-01	ci right 6.871509e-01	k: 102720	n:150000
GLYR1   150000 perm   39 sec   (3892 perm/sec)   p_kst 6.848000e-01   p_cons 6.626667e-03   p_joint 6.134000e-02

Joint ci ratio: 4.131189e-02	ci left: 5.217336e-02	ci right 5.438036e-02	k: 8523	n:160000
Cons ci ratio: 1.205759e-01	ci left: 6.166641e-03	ci right 6.963897e-03	k: 1049	n:160000
KS ci ratio: 6.647142e-03	ci left: 6.826173e-01	ci right 6.871760e-01	k: 109584	n:160000
GLYR1   160000 perm   42 sec   (3831 perm/sec)   p_kst 6.849000e-01   p_cons 6.556250e-03   p_joint 5.326875e-02

Joint ci ratio: 4.343379e-02	ci left: 4.472956e-02	ci right 4.672126e-02	k: 7772	n:170000
Cons ci ratio: 1.174336e-01	ci left: 6.129204e-03	ci right 6.899535e-03	k: 1106	n:170000
KS ci ratio: 6.444195e-03	ci left: 6.829862e-01	ci right 6.874075e-01	k: 116484	n:170000
GLYR1   170000 perm   45 sec   (3774 perm/sec)   p_kst 6.852000e-01   p_cons 6.505882e-03   p_joint 4.571765e-02

Joint ci ratio: 4.531991e-02	ci left: 3.900046e-02	ci right 4.081440e-02	k: 7182	n:180000
Cons ci ratio: 1.147732e-01	ci left: 6.069181e-03	ci right 6.813516e-03	k: 1158	n:180000
KS ci ratio: 6.256504e-03	ci left: 6.834717e-01	ci right 6.877668e-01	k: 123412	n:180000
GLYR1   180000 perm   48 sec   (3718 perm/sec)   p_kst 6.856222e-01   p_cons 6.433333e-03   p_joint 3.990000e-02

Joint ci ratio: 3.937034e-02	ci left: 4.861234e-02	ci right 5.056985e-02	k: 9421	n:190000
Cons ci ratio: 1.115007e-01	ci left: 6.102638e-03	ci right 6.828333e-03	k: 1227	n:190000
KS ci ratio: 6.084894e-03	ci left: 6.838655e-01	ci right 6.880446e-01	k: 130332	n:190000
GLYR1   190000 perm   52 sec   (3665 perm/sec)   p_kst 6.859579e-01   p_cons 6.457895e-03   p_joint 4.958421e-02

Joint ci ratio: 4.410880e-02	ci left: 3.715142e-02	ci right 3.883200e-02	k: 7597	n:200000
Cons ci ratio: 1.093019e-01	ci left: 6.040591e-03	ci right 6.743830e-03	k: 1277	n:200000
KS ci ratio: 5.928453e-03	ci left: 6.840910e-01	ci right 6.881636e-01	k: 137226	n:200000
GLYR1   200000 perm   55 sec   (3613 perm/sec)   p_kst 6.861300e-01   p_cons 6.385000e-03   p_joint 3.798500e-02

Joint ci ratio: 4.377209e-02	ci left: 3.597994e-02	ci right 3.759478e-02	k: 7724	n:210000
Cons ci ratio: 1.063055e-01	ci left: 6.091199e-03	ci right 6.779674e-03	k: 1350	n:210000
KS ci ratio: 5.782975e-03	ci left: 6.843344e-01	ci right 6.883081e-01	k: 144128	n:210000
GLYR1   210000 perm   59 sec   (3562 perm/sec)   p_kst 6.863238e-01   p_cons 6.428571e-03   p_joint 3.678095e-02

Joint ci ratio: 4.147610e-02	ci left: 3.820834e-02	ci right 3.983111e-02	k: 8583	n:220000
Cons ci ratio: 1.033968e-01	ci left: 6.155159e-03	ci right 6.830670e-03	k: 1427	n:220000
KS ci ratio: 5.649673e-03	ci left: 6.844065e-01	ci right 6.882886e-01	k: 150997	n:220000
GLYR1   220000 perm   63 sec   (3514 perm/sec)   p_kst 6.863500e-01   p_cons 6.486364e-03   p_joint 3.901364e-02

Joint ci ratio: 3.936163e-02	ci left: 4.052486e-02	ci right 4.215629e-02	k: 9507	n:230000
Cons ci ratio: 1.009170e-01	ci left: 6.188357e-03	ci right 6.850258e-03	k: 1498	n:230000
KS ci ratio: 5.524736e-03	ci left: 6.845081e-01	ci right 6.883046e-01	k: 157874	n:230000
GLYR1   230000 perm   66 sec   (3468 perm/sec)   p_kst 6.864087e-01   p_cons 6.513043e-03   p_joint 4.133478e-02

Joint ci ratio: 3.944669e-02	ci left: 3.874072e-02	ci right 4.030376e-02	k: 9484	n:240000
Cons ci ratio: 9.860755e-02	ci left: 6.218966e-03	ci right 6.868038e-03	k: 1569	n:240000
KS ci ratio: 5.412397e-03	ci left: 6.842307e-01	ci right 6.879482e-01	k: 164662	n:240000
GLYR1   240000 perm   70 sec   (3422 perm/sec)   p_kst 6.860917e-01   p_cons 6.537500e-03   p_joint 3.951667e-02

Outputting figure to mutsig2_images.part000000000071/GLYR1.4_1726_240000_0.68609_0.0065375_0.039517.png
                gene_name: GLYR1
               theta_stop: 0.099 
                    nperm: 240000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.0065 
      ci_cons_bounds_left: 0.0062 
     ci_cons_bounds_right: 0.0069 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.040 

Current progress: 41 percent done.
GJA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.210996e-02	ci left: 5.887143e-01	ci right 6.080283e-01	k: 5984	n:10000
Cons ci ratio: 7.310703e-02	ci left: 2.150704e-01	ci right 2.314911e-01	k: 2232	n:10000
KS ci ratio: 1.282242e-02	ci left: 8.974420e-01	ci right 9.091219e-01	k: 9034	n:10000
GJA5   10000 perm   2 sec   (6281 perm/sec)   p_kst 9.034000e-01   p_cons 2.232000e-01   p_joint 5.984000e-01

Outputting figure to mutsig2_images.part000000000071/GJA5.3_1081_10000_0.9034_0.2232_0.5984.png
                gene_name: GJA5
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 43 percent done.
GJB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.921266e-02	ci left: 6.334184e-01	ci right 6.522983e-01	k: 6429	n:10000
Cons ci ratio: 6.382384e-02	ci left: 2.650773e-01	ci right 2.826547e-01	k: 2738	n:10000
KS ci ratio: 9.733309e-03	ci left: 9.372385e-01	ci right 9.465020e-01	k: 9420	n:10000
GJB1   10000 perm   2 sec   (6552 perm/sec)   p_kst 9.420000e-01   p_cons 2.738000e-01   p_joint 6.429000e-01

Outputting figure to mutsig2_images.part000000000071/GJB1.3_856_10000_0.942_0.2738_0.6429.png
                gene_name: GJB1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 44 percent done.
GK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.742198e-03	ci left: 9.371348e-01	ci right 9.464058e-01	k: 9419	n:10000
Cons ci ratio: 1.851635e-02	ci left: 8.098890e-01	ci right 8.251256e-01	k: 8176	n:10000
KS ci ratio: 1.837348e-02	ci left: 8.122256e-01	ci right 8.273876e-01	k: 8199	n:10000
GK   10000 perm   2 sec   (6104 perm/sec)   p_kst 8.199000e-01   p_cons 8.176000e-01   p_joint 9.419000e-01

Outputting figure to mutsig2_images.part000000000071/GK.3_1764_10000_0.8199_0.8176_0.9419.png
                gene_name: GK
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 46 percent done.
GKAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.118569e-01	ci left: 2.958536e-02	ci right 3.669001e-02	k: 330	n:10000
Cons ci ratio: 1.645486e-01	ci left: 4.926618e-02	ci right 5.819605e-02	k: 536	n:10000
KS ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
GKAP1   10000 perm   2 sec   (6209 perm/sec)   p_kst 7.170000e-02   p_cons 5.360000e-02   p_joint 3.300000e-02

Joint ci ratio: 1.383310e-01	ci left: 3.592413e-02	ci right 4.131107e-02	k: 771	n:20000
Cons ci ratio: 1.157874e-01	ci left: 5.105351e-02	ci right 5.737688e-02	k: 1083	n:20000
KS ci ratio: 9.805090e-02	ci left: 7.036036e-02	ci right 7.766407e-02	k: 1479	n:20000
GKAP1   20000 perm   4 sec   (5559 perm/sec)   p_kst 7.395000e-02   p_cons 5.415000e-02   p_joint 3.855000e-02

Joint ci ratio: 1.511299e-01	ci left: 2.027360e-02	ci right 2.361987e-02	k: 657	n:30000
Cons ci ratio: 9.426523e-02	ci left: 5.192526e-02	ci right 5.709477e-02	k: 1634	n:30000
KS ci ratio: 7.927103e-02	ci left: 7.237132e-02	ci right 7.837789e-02	k: 2260	n:30000
GKAP1   30000 perm   6 sec   (5301 perm/sec)   p_kst 7.533333e-02   p_cons 5.446667e-02   p_joint 2.190000e-02

Joint ci ratio: 1.193741e-01	ci left: 2.468092e-02	ci right 2.783836e-02	k: 1049	n:40000
Cons ci ratio: 8.149809e-02	ci left: 5.244243e-02	ci right 5.692249e-02	k: 2186	n:40000
KS ci ratio: 6.856082e-02	ci left: 7.295391e-02	ci right 7.815791e-02	k: 3021	n:40000
GKAP1   40000 perm   8 sec   (5106 perm/sec)   p_kst 7.552500e-02   p_cons 5.465000e-02   p_joint 2.622500e-02

Joint ci ratio: 9.880392e-02	ci left: 2.901005e-02	ci right 3.204478e-02	k: 1525	n:50000
Cons ci ratio: 7.625378e-02	ci left: 4.828257e-02	ci right 5.212987e-02	k: 2509	n:50000
KS ci ratio: 5.970924e-02	ci left: 7.698550e-02	ci right 8.174347e-02	k: 3967	n:50000
GKAP1   50000 perm   10 sec   (4955 perm/sec)   p_kst 7.934000e-02   p_cons 5.018000e-02   p_joint 3.050000e-02

Outputting figure to mutsig2_images.part000000000071/GKAP1.3_1145_50000_0.07934_0.05018_0.0305.png
                gene_name: GKAP1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 48 percent done.
GKN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.867088e-03	ci left: 9.470021e-01	ci right 9.555325e-01	k: 9514	n:10000
Cons ci ratio: 1.239222e-02	ci left: 9.033987e-01	ci right 9.147617e-01	k: 9092	n:10000
KS ci ratio: 1.907883e-02	ci left: 8.006485e-01	ci right 8.161714e-01	k: 8085	n:10000
GKN1   10000 perm   2 sec   (6412 perm/sec)   p_kst 8.085000e-01   p_cons 9.092000e-01   p_joint 9.514000e-01

Outputting figure to mutsig2_images.part000000000071/GKN1.3_624_10000_0.8085_0.9092_0.9514.png
                gene_name: GKN1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 49 percent done.
GLB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.309272e-02	ci left: 1.435445e-01	ci right 1.576597e-01	k: 1505	n:10000
Cons ci ratio: 5.584290e-02	ci left: 3.207846e-01	ci right 3.393145e-01	k: 3300	n:10000
KS ci ratio: 9.180449e-02	ci left: 1.470751e-01	ci right 1.613269e-01	k: 1541	n:10000
GLB1   10000 perm   2 sec   (6206 perm/sec)   p_kst 1.541000e-01   p_cons 3.300000e-01   p_joint 1.505000e-01

Outputting figure to mutsig2_images.part000000000071/GLB1.3_2098_10000_0.1541_0.33_0.1505.png
                gene_name: GLB1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 51 percent done.
GLB1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.711180e-02	ci left: 6.671299e-01	ci right 6.855672e-01	k: 6764	n:10000
KS ci ratio: 8.664246e-03	ci left: 9.491889e-01	ci right 9.575444e-01	k: 9535	n:10000
GLB1L   10000 perm   2 sec   (6066 perm/sec)   p_kst 9.535000e-01   p_cons 6.764000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLB1L.3_2029_10000_0.9535_0.6764_1.png
                gene_name: GLB1L
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
GLCCI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.210789e-02	ci left: 4.543870e-01	ci right 4.740339e-01	k: 4642	n:10000
Cons ci ratio: 6.645966e-02	ci left: 2.494459e-01	ci right 2.666952e-01	k: 2580	n:10000
KS ci ratio: 4.050932e-02	ci left: 4.736615e-01	ci right 4.933481e-01	k: 4835	n:10000
GLCCI1   10000 perm   2 sec   (5828 perm/sec)   p_kst 4.835000e-01   p_cons 2.580000e-01   p_joint 4.642000e-01

Outputting figure to mutsig2_images.part000000000071/GLCCI1.3_1676_10000_0.4835_0.258_0.4642.png
                gene_name: GLCCI1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 54 percent done.
GLDC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.518550e-02	ci left: 1.380551e-01	ci right 1.519524e-01	k: 1449	n:10000
Cons ci ratio: 1.041386e-01	ci left: 1.176005e-01	ci right 1.306194e-01	k: 1240	n:10000
KS ci ratio: 6.358403e-02	ci left: 2.665620e-01	ci right 2.841691e-01	k: 2753	n:10000
GLDC   10000 perm   2 sec   (5426 perm/sec)   p_kst 2.753000e-01   p_cons 1.240000e-01   p_joint 1.449000e-01

Joint ci ratio: 6.098706e-02	ci left: 1.659532e-01	ci right 1.764426e-01	k: 3423	n:20000
Cons ci ratio: 7.961742e-02	ci left: 1.037797e-01	ci right 1.124346e-01	k: 2161	n:20000
KS ci ratio: 4.511354e-02	ci left: 2.678269e-01	ci right 2.802388e-01	k: 5480	n:20000
GLDC   20000 perm   4 sec   (4895 perm/sec)   p_kst 2.740000e-01   p_cons 1.080500e-01   p_joint 1.711500e-01

Outputting figure to mutsig2_images.part000000000071/GLDC.3_3163_20000_0.274_0.10805_0.17115.png
                gene_name: GLDC
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 56 percent done.
GLE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.578567e-02	ci left: 8.535544e-01	ci right 8.672349e-01	k: 8605	n:10000
KS ci ratio: 6.986261e-03	ci left: 9.657293e-01	ci right 9.725938e-01	k: 9693	n:10000
GLE1   10000 perm   2 sec   (5982 perm/sec)   p_kst 9.693000e-01   p_cons 8.605000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLE1.3_2177_10000_0.9693_0.8605_1.png
                gene_name: GLE1
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
GLIS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
Cons ci ratio: 1.484236e-01	ci left: 6.034192e-02	ci right 7.011322e-02	k: 651	n:10000
KS ci ratio: 6.758888e-02	ci left: 2.431184e-01	ci right 2.602265e-01	k: 2516	n:10000
GLIS1   10000 perm   2 sec   (5589 perm/sec)   p_kst 2.516000e-01   p_cons 6.510000e-02   p_joint 1.422000e-01

Joint ci ratio: 5.912097e-02	ci left: 1.748456e-01	ci right 1.855476e-01	k: 3603	n:20000
Cons ci ratio: 1.046534e-01	ci left: 6.210954e-02	ci right 6.901742e-02	k: 1310	n:20000
KS ci ratio: 4.643656e-02	ci left: 2.565608e-01	ci right 2.688082e-01	k: 5253	n:20000
GLIS1   20000 perm   4 sec   (5148 perm/sec)   p_kst 2.626500e-01   p_cons 6.550000e-02   p_joint 1.801500e-01

Joint ci ratio: 4.388288e-02	ci left: 2.054687e-01	ci right 2.147209e-01	k: 6302	n:30000
Cons ci ratio: 8.456727e-02	ci left: 6.400009e-02	ci right 6.968414e-02	k: 2004	n:30000
KS ci ratio: 3.802991e-02	ci left: 2.565338e-01	ci right 2.665124e-01	k: 7845	n:30000
GLIS1   30000 perm   6 sec   (4945 perm/sec)   p_kst 2.615000e-01   p_cons 6.680000e-02   p_joint 2.100667e-01

Outputting figure to mutsig2_images.part000000000071/GLIS1.3_1895_30000_0.2615_0.0668_0.21007.png
                gene_name: GLIS1
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.21 

Current progress: 59 percent done.
GLRA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.318138e-02	ci left: 4.419113e-01	ci right 4.615169e-01	k: 4517	n:10000
Cons ci ratio: 6.045373e-02	ci left: 2.869643e-01	ci right 3.049547e-01	k: 2959	n:10000
KS ci ratio: 4.794086e-02	ci left: 3.909759e-01	ci right 4.102820e-01	k: 4006	n:10000
GLRA2   10000 perm   2 sec   (5875 perm/sec)   p_kst 4.006000e-01   p_cons 2.959000e-01   p_joint 4.517000e-01

Outputting figure to mutsig2_images.part000000000071/GLRA2.3_1467_10000_0.4006_0.2959_0.4517.png
                gene_name: GLRA2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 61 percent done.
GLT1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.014019e-02	ci left: 2.295818e-01	ci right 2.463711e-01	k: 2379	n:10000
Cons ci ratio: 3.544597e-02	ci left: 5.402861e-01	ci right 5.598847e-01	k: 5501	n:10000
KS ci ratio: 1.034263e-01	ci left: 1.190667e-01	ci right 1.321523e-01	k: 1255	n:10000
GLT1D1   10000 perm   2 sec   (6305 perm/sec)   p_kst 1.255000e-01   p_cons 5.501000e-01   p_joint 2.379000e-01

Joint ci ratio: 5.803362e-02	ci left: 1.803317e-01	ci right 1.911598e-01	k: 3714	n:20000
Cons ci ratio: 2.404418e-02	ci left: 5.637051e-01	ci right 5.774744e-01	k: 11412	n:20000
KS ci ratio: 7.263950e-02	ci left: 1.224640e-01	ci right 1.317447e-01	k: 2541	n:20000
GLT1D1   20000 perm   4 sec   (5501 perm/sec)   p_kst 1.270500e-01   p_cons 5.706000e-01   p_joint 1.857000e-01

Outputting figure to mutsig2_images.part000000000071/GLT1D1.3_833_20000_0.12705_0.5706_0.1857.png
                gene_name: GLT1D1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 62 percent done.
GLT25D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.540610e-02	ci left: 1.665170e-01	ci right 1.814734e-01	k: 1739	n:10000
Cons ci ratio: 8.931779e-02	ci left: 1.542387e-01	ci right 1.687591e-01	k: 1614	n:10000
KS ci ratio: 7.176357e-02	ci left: 2.214853e-01	ci right 2.380724e-01	k: 2297	n:10000
GLT25D1   10000 perm   2 sec   (6462 perm/sec)   p_kst 2.297000e-01   p_cons 1.614000e-01   p_joint 1.739000e-01

Outputting figure to mutsig2_images.part000000000071/GLT25D1.3_1917_10000_0.2297_0.1614_0.1739.png
                gene_name: GLT25D1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 64 percent done.
GLT8D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.814273e-02	ci left: 3.033218e-01	ci right 3.215876e-01	k: 3124	n:10000
Cons ci ratio: 6.663364e-02	ci left: 2.484571e-01	ci right 2.656846e-01	k: 2570	n:10000
KS ci ratio: 7.027581e-02	ci left: 2.288905e-01	ci right 2.456629e-01	k: 2372	n:10000
GLT8D1   10000 perm   2 sec   (6190 perm/sec)   p_kst 2.372000e-01   p_cons 2.570000e-01   p_joint 3.124000e-01

Outputting figure to mutsig2_images.part000000000071/GLT8D1.3_1152_10000_0.2372_0.257_0.3124.png
                gene_name: GLT8D1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 66 percent done.
GLT8D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.996751e-02	ci left: 6.215560e-01	ci right 6.405676e-01	k: 6311	n:10000
KS ci ratio: 2.825238e-02	ci left: 6.487080e-01	ci right 6.673999e-01	k: 6581	n:10000
GLT8D2   10000 perm   2 sec   (5581 perm/sec)   p_kst 6.581000e-01   p_cons 6.311000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLT8D2.3_1086_10000_0.6581_0.6311_1.png
                gene_name: GLT8D2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
GLTSCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.829259e-02	ci left: 8.135465e-01	ci right 8.286659e-01	k: 8212	n:10000
KS ci ratio: 2.240852e-02	ci left: 7.451322e-01	ci right 7.621198e-01	k: 7537	n:10000
GLTSCR1   10000 perm   2 sec   (4941 perm/sec)   p_kst 7.537000e-01   p_cons 8.212000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLTSCR1.3_4735_10000_0.7537_0.8212_1.png
                gene_name: GLTSCR1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
GLYATL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.145934e-02	ci left: 5.985520e-01	ci right 6.177849e-01	k: 6082	n:10000
Cons ci ratio: 4.440474e-02	ci left: 4.281453e-01	ci right 4.476909e-01	k: 4379	n:10000
KS ci ratio: 4.600038e-02	ci left: 4.108988e-01	ci right 4.303474e-01	k: 4206	n:10000
GLYATL2   10000 perm   2 sec   (6457 perm/sec)   p_kst 4.206000e-01   p_cons 4.379000e-01   p_joint 6.082000e-01

Outputting figure to mutsig2_images.part000000000071/GLYATL2.3_905_10000_0.4206_0.4379_0.6082.png
                gene_name: GLYATL2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 70 percent done.
GMEB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.225356e-02	ci left: 2.191164e-01	ci right 2.356427e-01	k: 2273	n:10000
Cons ci ratio: 1.237387e-01	ci left: 8.552985e-02	ci right 9.690958e-02	k: 911	n:10000
KS ci ratio: 6.983219e-02	ci left: 2.311621e-01	ci right 2.479899e-01	k: 2395	n:10000
GMEB1   10000 perm   2 sec   (5947 perm/sec)   p_kst 2.395000e-01   p_cons 9.110000e-02   p_joint 2.273000e-01

Joint ci ratio: 4.972732e-02	ci left: 2.311201e-01	ci right 2.429564e-01	k: 4740	n:20000
Cons ci ratio: 8.763043e-02	ci left: 8.695066e-02	ci right 9.496872e-02	k: 1818	n:20000
KS ci ratio: 5.029057e-02	ci left: 2.271058e-01	ci right 2.388719e-01	k: 4659	n:20000
GMEB1   20000 perm   4 sec   (5314 perm/sec)   p_kst 2.329500e-01   p_cons 9.090000e-02   p_joint 2.370000e-01

Outputting figure to mutsig2_images.part000000000071/GMEB1.3_1758_20000_0.23295_0.0909_0.237.png
                gene_name: GMEB1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 72 percent done.
GMEB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.977475e-02	ci left: 2.314584e-01	ci right 2.482934e-01	k: 2398	n:10000
Cons ci ratio: 5.623661e-02	ci left: 3.177077e-01	ci right 3.361932e-01	k: 3269	n:10000
KS ci ratio: 6.556918e-02	ci left: 2.545889e-01	ci right 2.719492e-01	k: 2632	n:10000
GMEB2   10000 perm   2 sec   (6135 perm/sec)   p_kst 2.632000e-01   p_cons 3.269000e-01   p_joint 2.398000e-01

Outputting figure to mutsig2_images.part000000000071/GMEB2.3_1629_10000_0.2632_0.3269_0.2398.png
                gene_name: GMEB2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 74 percent done.
GMFB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.522995e-02	ci left: 3.256490e-01	ci right 3.442472e-01	k: 3349	n:10000
Cons ci ratio: 1.725017e-01	ci left: 4.485094e-02	ci right 5.341415e-02	k: 490	n:10000
KS ci ratio: 3.261332e-02	ci left: 5.811882e-01	ci right 6.005589e-01	k: 5909	n:10000
GMFB   10000 perm   1 sec   (6740 perm/sec)   p_kst 5.909000e-01   p_cons 4.900000e-02   p_joint 3.349000e-01

Joint ci ratio: 2.133708e-02	ci left: 6.211578e-01	ci right 6.346050e-01	k: 12558	n:20000
Cons ci ratio: 1.221762e-01	ci left: 4.595193e-02	ci right 5.198006e-02	k: 978	n:20000
KS ci ratio: 2.315791e-02	ci left: 5.820434e-01	ci right 5.957308e-01	k: 11778	n:20000
GMFB   20000 perm   3 sec   (5999 perm/sec)   p_kst 5.889000e-01   p_cons 4.890000e-02   p_joint 6.279000e-01

Joint ci ratio: 2.076596e-02	ci left: 5.372423e-01	ci right 5.485493e-01	k: 16287	n:30000
Cons ci ratio: 9.931356e-02	ci left: 4.690981e-02	ci right 5.184459e-02	k: 1480	n:30000
KS ci ratio: 1.890741e-02	ci left: 5.833406e-01	ci right 5.945089e-01	k: 17668	n:30000
GMFB   30000 perm   5 sec   (5690 perm/sec)   p_kst 5.889333e-01   p_cons 4.933333e-02   p_joint 5.429000e-01

Outputting figure to mutsig2_images.part000000000071/GMFB.3_457_30000_0.58893_0.049333_0.5429.png
                gene_name: GMFB
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 75 percent done.
GJB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.917392e-03	ci left: 9.819904e-01	ci right 9.869215e-01	k: 9846	n:10000
KS ci ratio: 2.357936e-02	ci left: 7.255253e-01	ci right 7.429380e-01	k: 7343	n:10000
GJB7   10000 perm   1 sec   (6837 perm/sec)   p_kst 7.343000e-01   p_cons 9.846000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GJB7.2_676_10000_0.7343_0.9846_1.png
                gene_name: GJB7
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
GJC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.556441e-03	ci left: 9.503353e-01	ci right 9.585973e-01	k: 9546	n:10000
Cons ci ratio: 2.933363e-02	ci left: 6.315079e-01	ci right 6.504099e-01	k: 6410	n:10000
KS ci ratio: 9.997367e-03	ci left: 9.341299e-01	ci right 9.436124e-01	k: 9390	n:10000
GJC3   10000 perm   1 sec   (6670 perm/sec)   p_kst 9.390000e-01   p_cons 6.410000e-01   p_joint 9.546000e-01

Outputting figure to mutsig2_images.part000000000071/GJC3.2_848_10000_0.939_0.641_0.9546.png
                gene_name: GJC3
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 79 percent done.
GJD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.497253e-02	ci left: 7.023076e-01	ci right 7.201692e-01	k: 7113	n:10000
Cons ci ratio: 7.376657e-02	ci left: 2.120120e-01	ci right 2.283513e-01	k: 2201	n:10000
KS ci ratio: 3.226381e-02	ci left: 5.864060e-01	ci right 6.057380e-01	k: 5961	n:10000
GJD4   10000 perm   1 sec   (6761 perm/sec)   p_kst 5.961000e-01   p_cons 2.201000e-01   p_joint 7.113000e-01

Outputting figure to mutsig2_images.part000000000071/GJD4.2_1121_10000_0.5961_0.2201_0.7113.png
                gene_name: GJD4
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 80 percent done.
GKN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.845979e-02	ci left: 6.453876e-01	ci right 6.641221e-01	k: 6548	n:10000
Cons ci ratio: 1.488668e-02	ci left: 8.673368e-01	ci right 8.804445e-01	k: 8740	n:10000
KS ci ratio: 4.997652e-02	ci left: 3.712686e-01	ci right 3.904009e-01	k: 3808	n:10000
GKN2   10000 perm   1 sec   (7109 perm/sec)   p_kst 3.808000e-01   p_cons 8.740000e-01   p_joint 6.548000e-01

Outputting figure to mutsig2_images.part000000000071/GKN2.2_579_10000_0.3808_0.874_0.6548.png
                gene_name: GKN2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 82 percent done.
GLIPR1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.106743e-02	ci left: 1.817616e-01	ci right 1.972197e-01	k: 1894	n:10000
Cons ci ratio: 7.468054e-02	ci left: 2.078695e-01	ci right 2.240963e-01	k: 2159	n:10000
KS ci ratio: 6.749929e-02	ci left: 2.436126e-01	ci right 2.607320e-01	k: 2521	n:10000
GLIPR1L1   10000 perm   1 sec   (6851 perm/sec)   p_kst 2.521000e-01   p_cons 2.159000e-01   p_joint 1.894000e-01

Outputting figure to mutsig2_images.part000000000071/GLIPR1L1.2_722_10000_0.2521_0.2159_0.1894.png
                gene_name: GLIPR1L1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 84 percent done.
GLIPR1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.849424e-02	ci left: 3.855000e-01	ci right 4.047611e-01	k: 3951	n:10000
Cons ci ratio: 2.601579e-02	ci left: 6.850639e-01	ci right 7.032228e-01	k: 6942	n:10000
KS ci ratio: 1.264263e-01	ci left: 8.212963e-02	ci right 9.331191e-02	k: 876	n:10000
GLIPR1L2   10000 perm   1 sec   (6757 perm/sec)   p_kst 8.760000e-02   p_cons 6.942000e-01   p_joint 3.951000e-01

Joint ci ratio: 3.451735e-02	ci left: 3.852252e-01	ci right 3.988062e-01	k: 7840	n:20000
Cons ci ratio: 1.848534e-02	ci left: 6.857000e-01	ci right 6.985441e-01	k: 13843	n:20000
KS ci ratio: 8.805710e-02	ci left: 8.616660e-02	ci right 9.415302e-02	k: 1802	n:20000
GLIPR1L2   20000 perm   3 sec   (6030 perm/sec)   p_kst 9.010000e-02   p_cons 6.921500e-01   p_joint 3.920000e-01

Outputting figure to mutsig2_images.part000000000071/GLIPR1L2.2_778_20000_0.0901_0.69215_0.392.png
                gene_name: GLIPR1L2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 85 percent done.
GLRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.120649e-02	ci left: 7.652685e-01	ci right 7.817719e-01	k: 7736	n:10000
Cons ci ratio: 3.409876e-02	ci left: 5.594255e-01	ci right 5.789342e-01	k: 5692	n:10000
KS ci ratio: 1.105409e-01	ci left: 1.054923e-01	ci right 1.179349e-01	k: 1116	n:10000
GLRA1   10000 perm   2 sec   (6410 perm/sec)   p_kst 1.116000e-01   p_cons 5.692000e-01   p_joint 7.736000e-01

Joint ci ratio: 7.289403e-03	ci left: 9.318532e-01	ci right 9.387196e-01	k: 18707	n:20000
Cons ci ratio: 2.400005e-02	ci left: 5.646067e-01	ci right 5.783725e-01	k: 11430	n:20000
KS ci ratio: 7.872215e-02	ci left: 1.059412e-01	ci right 1.146724e-01	k: 2205	n:20000
GLRA1   20000 perm   3 sec   (5732 perm/sec)   p_kst 1.102500e-01   p_cons 5.715000e-01   p_joint 9.353500e-01

Outputting figure to mutsig2_images.part000000000071/GLRA1.2_1410_20000_0.11025_0.5715_0.93535.png
                gene_name: GLRA1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 87 percent done.
GLS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.464933e-02	ci left: 8.709139e-01	ci right 8.838654e-01	k: 8775	n:10000
Cons ci ratio: 4.152849e-02	ci left: 4.612762e-01	ci right 4.809407e-01	k: 4711	n:10000
KS ci ratio: 2.544131e-02	ci left: 6.945411e-01	ci right 7.125402e-01	k: 7036	n:10000
GLS2   10000 perm   2 sec   (6176 perm/sec)   p_kst 7.036000e-01   p_cons 4.711000e-01   p_joint 8.775000e-01

Outputting figure to mutsig2_images.part000000000071/GLS2.2_1881_10000_0.7036_0.4711_0.8775.png
                gene_name: GLS2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 89 percent done.
GLT6D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.429909e-02	ci left: 7.135091e-01	ci right 7.311612e-01	k: 7224	n:10000
Cons ci ratio: 1.895557e-02	ci left: 8.026788e-01	ci right 8.181399e-01	k: 8105	n:10000
KS ci ratio: 7.820259e-02	ci left: 1.928879e-01	ci right 2.086868e-01	k: 2007	n:10000
GLT6D1   10000 perm   1 sec   (6812 perm/sec)   p_kst 2.007000e-01   p_cons 8.105000e-01   p_joint 7.224000e-01

Outputting figure to mutsig2_images.part000000000071/GLT6D1.2_847_10000_0.2007_0.8105_0.7224.png
                gene_name: GLT6D1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 90 percent done.
GLTSCR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.476387e-02	ci left: 5.499041e-01	ci right 5.694611e-01	k: 5597	n:10000
Cons ci ratio: 2.319292e-02	ci left: 7.319911e-01	ci right 7.492685e-01	k: 7407	n:10000
KS ci ratio: 6.052633e-02	ci left: 2.864688e-01	ci right 3.044505e-01	k: 2954	n:10000
GLTSCR2   10000 perm   2 sec   (6381 perm/sec)   p_kst 2.954000e-01   p_cons 7.407000e-01   p_joint 5.597000e-01

Outputting figure to mutsig2_images.part000000000071/GLTSCR2.2_1489_10000_0.2954_0.7407_0.5597.png
                gene_name: GLTSCR2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 92 percent done.
GLUD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.523591e-02	ci left: 8.620253e-01	ci right 8.753591e-01	k: 8688	n:10000
Cons ci ratio: 4.543874e-02	ci left: 4.168789e-01	ci right 4.363639e-01	k: 4266	n:10000
KS ci ratio: 1.831127e-02	ci left: 8.132417e-01	ci right 8.283709e-01	k: 8209	n:10000
GLUD1   10000 perm   2 sec   (6330 perm/sec)   p_kst 8.209000e-01   p_cons 4.266000e-01   p_joint 8.688000e-01

Outputting figure to mutsig2_images.part000000000071/GLUD1.2_1729_10000_0.8209_0.4266_0.8688.png
                gene_name: GLUD1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 93 percent done.
GLYAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.173608e-02	ci left: 9.122441e-01	ci right 9.231112e-01	k: 9178	n:10000
Cons ci ratio: 9.953727e-03	ci left: 9.346478e-01	ci right 9.440942e-01	k: 9395	n:10000
KS ci ratio: 1.852255e-02	ci left: 8.097874e-01	ci right 8.250272e-01	k: 8175	n:10000
GLYAT   10000 perm   2 sec   (6665 perm/sec)   p_kst 8.175000e-01   p_cons 9.395000e-01   p_joint 9.178000e-01

Outputting figure to mutsig2_images.part000000000071/GLYAT.2_915_10000_0.8175_0.9395_0.9178.png
                gene_name: GLYAT
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 95 percent done.
GLYATL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.993693e-02	ci left: 7.864452e-01	ci right 8.023829e-01	k: 7945	n:10000
KS ci ratio: 1.604104e-02	ci left: 8.495769e-01	ci right 8.634147e-01	k: 8566	n:10000
GLYATL1   10000 perm   2 sec   (6635 perm/sec)   p_kst 8.566000e-01   p_cons 7.945000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000071/GLYATL1.2_1030_10000_0.8566_0.7945_1.png
                gene_name: GLYATL1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
GM2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.335719e-03	ci left: 9.418039e-01	ci right 9.507338e-01	k: 9464	n:10000
Cons ci ratio: 5.519279e-02	ci left: 3.259469e-01	ci right 3.445492e-01	k: 3352	n:10000
KS ci ratio: 2.342233e-02	ci left: 7.281518e-01	ci right 7.455101e-01	k: 7369	n:10000
GM2A   10000 perm   1 sec   (6785 perm/sec)   p_kst 7.369000e-01   p_cons 3.352000e-01   p_joint 9.464000e-01

Outputting figure to mutsig2_images.part000000000071/GM2A.2_751_10000_0.7369_0.3352_0.9464.png
                gene_name: GM2A
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 98 percent done.
GMFG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.506606e-01	ci left: 5.860517e-02	ci right 6.825107e-02	k: 633	n:10000
Cons ci ratio: 5.943955e-02	ci left: 2.940013e-01	ci right 3.121135e-01	k: 3030	n:10000
KS ci ratio: 2.638133e-01	ci left: 1.874721e-02	ci right 2.453613e-02	k: 215	n:10000
GMFG   10000 perm   1 sec   (6926 perm/sec)   p_kst 2.150000e-02   p_cons 3.030000e-01   p_joint 6.330000e-02

Joint ci ratio: 9.065067e-02	ci left: 8.161116e-02	ci right 8.940983e-02	k: 1709	n:20000
Cons ci ratio: 4.164053e-02	ci left: 3.006110e-01	ci right 3.134452e-01	k: 6140	n:20000
KS ci ratio: 1.894834e-01	ci left: 1.896235e-02	ci right 2.297861e-02	k: 418	n:20000
GMFG   20000 perm   3 sec   (6173 perm/sec)   p_kst 2.090000e-02   p_cons 3.070000e-01   p_joint 8.545000e-02

Joint ci ratio: 6.755823e-02	ci left: 9.748097e-02	ci right 1.043299e-01	k: 3026	n:30000
Cons ci ratio: 3.362881e-02	ci left: 3.064604e-01	ci right 3.169761e-01	k: 9351	n:30000
KS ci ratio: 1.496256e-01	ci left: 2.069096e-02	ci right 2.406909e-02	k: 670	n:30000
GMFG   30000 perm   5 sec   (5867 perm/sec)   p_kst 2.233333e-02   p_cons 3.117000e-01   p_joint 1.008667e-01

Joint ci ratio: 6.327442e-02	ci left: 8.477305e-02	ci right 9.033699e-02	k: 3501	n:40000
Cons ci ratio: 2.915285e-02	ci left: 3.067389e-01	ci right 3.158385e-01	k: 12451	n:40000
KS ci ratio: 1.287484e-01	ci left: 2.118995e-02	ci right 2.412991e-02	k: 905	n:40000
GMFG   40000 perm   7 sec   (5658 perm/sec)   p_kst 2.262500e-02   p_cons 3.112750e-01   p_joint 8.752500e-02

Joint ci ratio: 5.583253e-02	ci left: 8.722894e-02	ci right 9.225881e-02	k: 4486	n:50000
Cons ci ratio: 2.607876e-02	ci left: 3.071628e-01	ci right 3.152991e-01	k: 15561	n:50000
KS ci ratio: 1.158649e-01	ci left: 2.108184e-02	ci right 2.369402e-02	k: 1118	n:50000
GMFG   50000 perm   9 sec   (5500 perm/sec)   p_kst 2.236000e-02   p_cons 3.112200e-01   p_joint 8.972000e-02

Joint ci ratio: 5.046199e-02	ci left: 8.907266e-02	ci right 9.370029e-02	k: 5482	n:60000
Cons ci ratio: 2.370549e-02	ci left: 3.093402e-01	ci right 3.167779e-01	k: 18783	n:60000
KS ci ratio: 1.056814e-01	ci left: 2.123074e-02	ci right 2.361576e-02	k: 1344	n:60000
GMFG   60000 perm   11 sec   (5355 perm/sec)   p_kst 2.240000e-02   p_cons 3.130500e-01   p_joint 9.136667e-02

Joint ci ratio: 4.649447e-02	ci left: 9.003833e-02	ci right 9.433840e-02	k: 6452	n:70000
Cons ci ratio: 2.191257e-02	ci left: 3.102919e-01	ci right 3.171807e-01	k: 21961	n:70000
KS ci ratio: 9.762481e-02	ci left: 2.141406e-02	ci right 2.362576e-02	k: 1575	n:70000
GMFG   70000 perm   13 sec   (5225 perm/sec)   p_kst 2.250000e-02   p_cons 3.137286e-01   p_joint 9.217143e-02

Outputting figure to mutsig2_images.part000000000071/GMFG.2_457_70000_0.0225_0.31373_0.092171.png
                gene_name: GMFG
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.094 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000071
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 71 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1431>
Subject: Job 9893952: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1431>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000072> was used as the working directory.
Started at Sat Oct  6 00:09:57 2012
Results reported at Sat Oct  6 00:26:28 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000072.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000072.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 72  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000072.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1079.87 sec.
    Max Memory :      3635 MB
    Max Swap   :      6006 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
72
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 72
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 72: processing genes 6402 - 6491
Calculating significance of each gene.
Using projection method.
6402	GMPPA	2.289989e-02
6403	GMPPB	1
6404	GMPR	5.598192e-01
6405	GMPR2	4.983717e-01
6406	GMPS	1.803998e-01
6407	GNA11	7.905578e-01
6408	GNA12	5.269073e-01
6409	GNA13	8.624069e-01
6410	GNA14	2.470369e-02
6411	GNA15	1.751385e-01
6412	GNAI1	8.706654e-02
6413	GNAI2	1
6414	GNAI3	1
6415	GNAL	4.522099e-01
6416	GNAO1	9.944050e-02
6417	GNAQ	2.604435e-01
6418	GNAS	3.150113e-01
6419	GNAT1	7.373121e-01
6420	GNAT2	3.928823e-01
6421	GNAT3	6.200522e-01
6422	GNAZ	7.619700e-01
6423	GNB1	7.552407e-01
6424	GNB1L	8.036119e-01
6425	GNB2	1
6426	GNB2L1	1
6427	GNB3	2.370220e-01
6428	GNB4	1.285348e-01
6429	GNB5	8.593633e-01
6430	GNE	7.431808e-01
6431	GNG10	1
6432	GNG11	1
6433	GNG12	1
6434	GNG13	1
6435	GNG2	1
6436	GNG3	6.288350e-02
6437	GNG4	3.242501e-01
6438	GNG5	1
6439	GNG7	2.355576e-01
6440	GNG8	1
6441	GNGT1	8.862667e-02
6442	GNGT2	1
6443	GNL1	9.091571e-01
6444	GNL2	8.443646e-01
6445	GNL3	2.392511e-01
6446	GNL3L	4.989932e-01
6447	GNLY	2.529597e-01
6448	GNMT	4.051402e-01
6449	GNPAT	7.375319e-01
6450	GNPDA1	1
6451	GNPDA2	5.308052e-01
6452	GNPNAT1	1
6453	GNPTAB	6.248988e-01
6454	GNPTG	1
6455	GNRH1	1
6456	GNRH2	1
6457	GNRHR	3.179420e-02
6458	GNS	5.620525e-01
6459	GOLGA1	7.421440e-01
6460	GOLGA2	7.773684e-01
6461	GOLGA2B	1
6462	GOLGA3	9.721732e-01
6463	GOLGA4	8.487726e-01
6464	GOLGA5	1.048791e-01
6465	GOLGA6A	1
6466	GOLGA6B	1
6467	GOLGA7	3.747171e-01
6468	GOLGA7B	3.970339e-02
6469	GOLGB1	3.420910e-01
6470	GOLIM4	9.198034e-02
6471	GOLM1	4.683710e-01
6472	GOLPH3	1.943975e-01
In gene GOLPH3L the following bins exceed PROBCAP:
    COAD-AA-3529	categ 6	N = 874     n = 1	mu =   2.41e-07
6473	GOLPH3L	2.472876e-01
6474	GOLT1A	1
6475	GOLT1B	2.022259e-01
6476	GON4L	9.505882e-01
6477	GOPC	5.047180e-01
6478	GORAB	8.459641e-01
6479	GORASP1	1.131670e-01
6480	GORASP2	9.245538e-01
6481	GOSR1	2.114388e-01
6482	GOSR2	2.744563e-01
6483	GOT1	1.341061e-01
6484	GOT1L1	5.654137e-01
6485	GOT2	8.509812e-01
6486	GP1BA	9.173534e-01
6487	GP2	4.379111e-01
6488	GP5	2.937921e-01
6489	GP6	9.274103e-01
6490	GP9	1
6491	GPA33	7.127263e-01
Done

Running MutSig 2:
Scatter job 72: processing genes 6402 - 6491
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GOLGB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.232741e-01	ci left: 2.655489e-02	ci right 3.332262e-02	k: 298	n:10000
Cons ci ratio: 6.264461e-01	ci left: 2.690467e-03	ci right 5.212103e-03	k: 38	n:10000
KS ci ratio: 5.444600e-02	ci left: 3.320042e-01	ci right 3.506883e-01	k: 3413	n:10000
GOLGB1   10000 perm   4 sec   (2410 perm/sec)   p_kst 3.413000e-01   p_cons 3.800000e-03   p_joint 2.980000e-02

Joint ci ratio: 2.173693e-01	ci left: 1.425935e-02	ci right 1.778339e-02	k: 319	n:20000
Cons ci ratio: 4.293715e-01	ci left: 3.262140e-03	ci right 5.086662e-03	k: 82	n:20000
KS ci ratio: 3.823097e-02	ci left: 3.379121e-01	ci right 3.511331e-01	k: 6890	n:20000
GOLGB1   20000 perm   13 sec   (1537 perm/sec)   p_kst 3.445000e-01   p_cons 4.100000e-03   p_joint 1.595000e-02

Joint ci ratio: 2.033636e-01	ci left: 1.098852e-02	ci right 1.350727e-02	k: 366	n:30000
Cons ci ratio: 3.556384e-01	ci left: 3.317477e-03	ci right 4.781146e-03	k: 120	n:30000
KS ci ratio: 3.111320e-02	ci left: 3.406156e-01	ci right 3.514143e-01	k: 10380	n:30000
GOLGB1   30000 perm   18 sec   (1693 perm/sec)   p_kst 3.460000e-01   p_cons 4.000000e-03   p_joint 1.220000e-02

Joint ci ratio: 1.884616e-01	ci left: 9.691048e-03	ci right 1.173092e-02	k: 427	n:40000
Cons ci ratio: 3.132347e-01	ci left: 3.289902e-03	ci right 4.533824e-03	k: 155	n:40000
KS ci ratio: 2.707231e-02	ci left: 3.392191e-01	ci right 3.485536e-01	k: 13755	n:40000
GOLGB1   40000 perm   23 sec   (1703 perm/sec)   p_kst 3.438750e-01   p_cons 3.875000e-03   p_joint 1.067500e-02

Joint ci ratio: 1.453402e-01	ci left: 1.329691e-02	ci right 1.540003e-02	k: 716	n:50000
Cons ci ratio: 2.908406e-01	ci left: 3.094032e-03	ci right 4.164873e-03	k: 180	n:50000
KS ci ratio: 2.424213e-02	ci left: 3.391972e-01	ci right 3.475410e-01	k: 17168	n:50000
GOLGB1   50000 perm   29 sec   (1719 perm/sec)   p_kst 3.433600e-01   p_cons 3.600000e-03   p_joint 1.432000e-02

Joint ci ratio: 1.216912e-01	ci left: 1.596455e-02	ci right 1.804922e-02	k: 1019	n:60000
Cons ci ratio: 2.631995e-01	ci left: 3.198848e-03	ci right 4.183453e-03	k: 220	n:60000
KS ci ratio: 2.212241e-02	ci left: 3.397162e-01	ci right 3.473323e-01	k: 20611	n:60000
GOLGB1   60000 perm   35 sec   (1717 perm/sec)   p_kst 3.435167e-01   p_cons 3.666667e-03   p_joint 1.698333e-02

Joint ci ratio: 1.080029e-01	ci left: 1.747290e-02	ci right 1.948158e-02	k: 1292	n:70000
Cons ci ratio: 2.445499e-01	ci left: 3.210095e-03	ci right 4.117528e-03	k: 255	n:70000
KS ci ratio: 2.043885e-02	ci left: 3.409363e-01	ci right 3.479909e-01	k: 24112	n:70000
GOLGB1   70000 perm   41 sec   (1719 perm/sec)   p_kst 3.444571e-01   p_cons 3.642857e-03   p_joint 1.845714e-02

Joint ci ratio: 1.108631e-01	ci left: 1.453376e-02	ci right 1.625165e-02	k: 1230	n:80000
Cons ci ratio: 2.305706e-01	ci left: 3.185037e-03	ci right 4.026594e-03	k: 287	n:80000
KS ci ratio: 1.915096e-02	ci left: 3.404083e-01	ci right 3.470030e-01	k: 27496	n:80000
GOLGB1   80000 perm   47 sec   (1712 perm/sec)   p_kst 3.437000e-01   p_cons 3.587500e-03   p_joint 1.537500e-02

Joint ci ratio: 1.149543e-01	ci left: 1.202180e-02	ci right 1.349874e-02	k: 1147	n:90000
Cons ci ratio: 2.197798e-01	ci left: 3.135190e-03	ci right 3.919569e-03	k: 316	n:90000
KS ci ratio: 1.804687e-02	ci left: 3.408184e-01	ci right 3.470361e-01	k: 30953	n:90000
GOLGB1   90000 perm   52 sec   (1728 perm/sec)   p_kst 3.439222e-01   p_cons 3.511111e-03   p_joint 1.274444e-02

Joint ci ratio: 1.110821e-01	ci left: 1.161630e-02	ci right 1.299220e-02	k: 1229	n:100000
Cons ci ratio: 2.070967e-01	ci left: 3.200316e-03	ci right 3.948933e-03	k: 356	n:100000
KS ci ratio: 1.713151e-02	ci left: 3.406960e-01	ci right 3.465930e-01	k: 34364	n:100000
GOLGB1   100000 perm   57 sec   (1742 perm/sec)   p_kst 3.436400e-01   p_cons 3.560000e-03   p_joint 1.229000e-02

Joint ci ratio: 1.091867e-01	ci left: 1.094905e-02	ci right 1.222235e-02	k: 1273	n:110000
Cons ci ratio: 1.949102e-01	ci left: 3.306547e-03	ci right 4.029102e-03	k: 402	n:110000
KS ci ratio: 1.632916e-02	ci left: 3.409746e-01	ci right 3.465973e-01	k: 37816	n:110000
GOLGB1   110000 perm   63 sec   (1754 perm/sec)   p_kst 3.437818e-01   p_cons 3.654545e-03   p_joint 1.157273e-02

Joint ci ratio: 1.089380e-01	ci left: 1.009313e-02	ci right 1.126404e-02	k: 1280	n:120000
Cons ci ratio: 1.854802e-01	ci left: 3.364353e-03	ci right 4.059970e-03	k: 444	n:120000
KS ci ratio: 1.564724e-02	ci left: 3.407130e-01	ci right 3.460946e-01	k: 41208	n:120000
GOLGB1   120000 perm   68 sec   (1757 perm/sec)   p_kst 3.434000e-01   p_cons 3.700000e-03   p_joint 1.066667e-02

Joint ci ratio: 1.089403e-01	ci left: 9.324011e-03	ci right 1.040571e-02	k: 1281	n:130000
Cons ci ratio: 1.793430e-01	ci left: 3.333127e-03	ci right 3.997008e-03	k: 475	n:130000
KS ci ratio: 1.522959e-02	ci left: 3.350061e-01	ci right 3.401549e-01	k: 43885	n:130000
GOLGB1   130000 perm   74 sec   (1763 perm/sec)   p_kst 3.375769e-01   p_cons 3.653846e-03   p_joint 9.853846e-03

Joint ci ratio: 1.227775e-01	ci left: 6.784558e-03	ci right 7.678890e-03	k: 1011	n:140000
Cons ci ratio: 1.715832e-01	ci left: 3.395543e-03	ci right 4.039566e-03	k: 519	n:140000
KS ci ratio: 1.468377e-02	ci left: 3.348518e-01	ci right 3.398121e-01	k: 47226	n:140000
GOLGB1   140000 perm   79 sec   (1766 perm/sec)   p_kst 3.373286e-01   p_cons 3.707143e-03   p_joint 7.221429e-03

Joint ci ratio: 1.020550e-01	ci left: 9.242662e-03	ci right 1.024309e-02	k: 1460	n:150000
Cons ci ratio: 1.674544e-01	ci left: 3.335145e-03	ci right 3.950954e-03	k: 545	n:150000
KS ci ratio: 1.418151e-02	ci left: 3.350736e-01	ci right 3.398660e-01	k: 50620	n:150000
GOLGB1   150000 perm   85 sec   (1769 perm/sec)   p_kst 3.374667e-01   p_cons 3.633333e-03   p_joint 9.733333e-03

Joint ci ratio: 9.428735e-02	ci left: 1.018331e-02	ci right 1.119704e-02	k: 1709	n:160000
Cons ci ratio: 1.628967e-01	ci left: 3.312436e-03	ci right 3.905775e-03	k: 576	n:160000
KS ci ratio: 1.372941e-02	ci left: 3.352078e-01	ci right 3.398481e-01	k: 54004	n:160000
GOLGB1   160000 perm   90 sec   (1770 perm/sec)   p_kst 3.375250e-01   p_cons 3.600000e-03   p_joint 1.068125e-02

Joint ci ratio: 1.001283e-01	ci left: 8.487675e-03	ci right 9.388015e-03	k: 1518	n:170000
Cons ci ratio: 1.560108e-01	ci left: 3.411282e-03	ci right 3.994081e-03	k: 628	n:170000
KS ci ratio: 1.332742e-02	ci left: 3.350113e-01	ci right 3.395119e-01	k: 57334	n:170000
GOLGB1   170000 perm   96 sec   (1769 perm/sec)   p_kst 3.372588e-01   p_cons 3.694118e-03   p_joint 8.929412e-03

Joint ci ratio: 9.777925e-02	ci left: 8.417059e-03	ci right 9.287759e-03	k: 1592	n:180000
Cons ci ratio: 1.523054e-01	ci left: 3.387342e-03	ci right 3.951052e-03	k: 659	n:180000
KS ci ratio: 1.295847e-02	ci left: 3.348495e-01	ci right 3.392224e-01	k: 60666	n:180000
GOLGB1   180000 perm   103 sec   (1755 perm/sec)   p_kst 3.370333e-01   p_cons 3.661111e-03   p_joint 8.844444e-03

Joint ci ratio: 9.774038e-02	ci left: 7.984238e-03	ci right 8.809814e-03	k: 1594	n:190000
Cons ci ratio: 1.486363e-01	ci left: 3.376204e-03	ci right 3.923322e-03	k: 692	n:190000
KS ci ratio: 1.261558e-02	ci left: 3.348114e-01	ci right 3.390673e-01	k: 64018	n:190000
GOLGB1   190000 perm   108 sec   (1753 perm/sec)   p_kst 3.369368e-01   p_cons 3.642105e-03   p_joint 8.389474e-03

Joint ci ratio: 9.616337e-02	ci left: 7.843573e-03	ci right 8.640779e-03	k: 1647	n:200000
Cons ci ratio: 1.444237e-01	ci left: 3.404882e-03	ci right 3.939662e-03	k: 733	n:200000
KS ci ratio: 1.229676e-02	ci left: 3.348434e-01	ci right 3.389913e-01	k: 67383	n:200000
GOLGB1   200000 perm   114 sec   (1749 perm/sec)   p_kst 3.369150e-01   p_cons 3.665000e-03   p_joint 8.235000e-03

Joint ci ratio: 9.474434e-02	ci left: 7.702454e-03	ci right 8.473122e-03	k: 1697	n:210000
Cons ci ratio: 1.417484e-01	ci left: 3.371301e-03	ci right 3.890168e-03	k: 761	n:210000
KS ci ratio: 1.199532e-02	ci left: 3.350828e-01	ci right 3.391312e-01	k: 70792	n:210000
GOLGB1   210000 perm   121 sec   (1733 perm/sec)   p_kst 3.371048e-01   p_cons 3.623810e-03   p_joint 8.080952e-03

Joint ci ratio: 9.664384e-02	ci left: 7.063845e-03	ci right 7.785588e-03	k: 1632	n:220000
Cons ci ratio: 1.387763e-01	ci left: 3.362795e-03	ci right 3.868604e-03	k: 794	n:220000
KS ci ratio: 1.171287e-02	ci left: 3.353833e-01	ci right 3.393392e-01	k: 74219	n:220000
GOLGB1   220000 perm   129 sec   (1704 perm/sec)   p_kst 3.373591e-01   p_cons 3.609091e-03   p_joint 7.418182e-03

Joint ci ratio: 7.956443e-02	ci left: 1.002776e-02	ci right 1.086290e-02	k: 2401	n:230000
Cons ci ratio: 1.355735e-01	ci left: 3.376136e-03	ci right 3.871286e-03	k: 832	n:230000
KS ci ratio: 1.146150e-02	ci left: 3.351897e-01	ci right 3.390579e-01	k: 77538	n:230000
GOLGB1   230000 perm   136 sec   (1693 perm/sec)   p_kst 3.371217e-01   p_cons 3.617391e-03   p_joint 1.043913e-02

Joint ci ratio: 7.197539e-02	ci left: 1.176871e-02	ci right 1.265146e-02	k: 2929	n:240000
Cons ci ratio: 1.325063e-01	ci left: 3.392516e-03	ci right 3.877926e-03	k: 871	n:240000
KS ci ratio: 1.141610e-02	ci left: 3.275488e-01	ci right 3.313137e-01	k: 79063	n:240000
GOLGB1   240000 perm   142 sec   (1685 perm/sec)   p_kst 3.294292e-01   p_cons 3.629167e-03   p_joint 1.220417e-02

Joint ci ratio: 7.307331e-02	ci left: 1.096396e-02	ci right 1.179942e-02	k: 2844	n:250000
Cons ci ratio: 1.303583e-01	ci left: 3.368999e-03	ci right 3.842624e-03	k: 900	n:250000
KS ci ratio: 1.118821e-02	ci left: 3.274778e-01	ci right 3.311662e-01	k: 82330	n:250000
GOLGB1   250000 perm   149 sec   (1674 perm/sec)   p_kst 3.293200e-01   p_cons 3.600000e-03   p_joint 1.137600e-02

Joint ci ratio: 7.238534e-02	ci left: 1.074992e-02	ci right 1.156103e-02	k: 2899	n:260000
Cons ci ratio: 1.275566e-01	ci left: 3.388307e-03	ci right 3.853635e-03	k: 940	n:260000
KS ci ratio: 1.096935e-02	ci left: 3.275781e-01	ci right 3.311950e-01	k: 85640	n:260000
GOLGB1   260000 perm   156 sec   (1662 perm/sec)   p_kst 3.293846e-01   p_cons 3.615385e-03   p_joint 1.115000e-02

Joint ci ratio: 6.554510e-02	ci left: 1.264535e-02	ci right 1.350589e-02	k: 3529	n:270000
Cons ci ratio: 1.251203e-01	ci left: 3.395521e-03	ci right 3.852273e-03	k: 977	n:270000
KS ci ratio: 1.076645e-02	ci left: 3.275236e-01	ci right 3.310726e-01	k: 88910	n:270000
GOLGB1   270000 perm   163 sec   (1655 perm/sec)   p_kst 3.292963e-01   p_cons 3.618519e-03   p_joint 1.307037e-02

Joint ci ratio: 6.526167e-02	ci left: 1.230607e-02	ci right 1.313977e-02	k: 3561	n:280000
Cons ci ratio: 1.230010e-01	ci left: 3.391913e-03	ci right 3.839887e-03	k: 1011	n:280000
KS ci ratio: 1.057458e-02	ci left: 3.274665e-01	ci right 3.309513e-01	k: 92178	n:280000
GOLGB1   280000 perm   170 sec   (1645 perm/sec)   p_kst 3.292071e-01   p_cons 3.610714e-03   p_joint 1.271786e-02

Joint ci ratio: 6.558444e-02	ci left: 1.176969e-02	ci right 1.257114e-02	k: 3528	n:290000
Cons ci ratio: 1.206967e-01	ci left: 3.405335e-03	ci right 3.846055e-03	k: 1050	n:290000
KS ci ratio: 1.038378e-02	ci left: 3.277893e-01	ci right 3.312141e-01	k: 95555	n:290000
GOLGB1   290000 perm   178 sec   (1631 perm/sec)   p_kst 3.295000e-01   p_cons 3.620690e-03   p_joint 1.216552e-02

Joint ci ratio: 6.542927e-02	ci left: 1.143632e-02	ci right 1.221315e-02	k: 3546	n:300000
Cons ci ratio: 1.187361e-01	ci left: 3.404997e-03	ci right 3.838012e-03	k: 1085	n:300000
KS ci ratio: 1.021048e-02	ci left: 3.277648e-01	ci right 3.311319e-01	k: 98834	n:300000
GOLGB1   300000 perm   185 sec   (1621 perm/sec)   p_kst 3.294467e-01   p_cons 3.616667e-03   p_joint 1.182000e-02

Joint ci ratio: 6.663016e-02	ci left: 1.067387e-02	ci right 1.141273e-02	k: 3422	n:310000
Cons ci ratio: 1.168158e-01	ci left: 3.407866e-03	ci right 3.833754e-03	k: 1121	n:310000
KS ci ratio: 1.003972e-02	ci left: 3.280000e-01	ci right 3.313128e-01	k: 102193	n:310000
GOLGB1   310000 perm   192 sec   (1613 perm/sec)   p_kst 3.296548e-01   p_cons 3.616129e-03   p_joint 1.103871e-02

Joint ci ratio: 6.303597e-02	ci left: 1.156407e-02	ci right 1.231980e-02	k: 3820	n:320000
Cons ci ratio: 1.147869e-01	ci left: 3.422751e-03	ci right 3.842567e-03	k: 1161	n:320000
KS ci ratio: 9.879338e-03	ci left: 3.281274e-01	ci right 3.313882e-01	k: 105522	n:320000
GOLGB1   320000 perm   200 sec   (1603 perm/sec)   p_kst 3.297562e-01   p_cons 3.628125e-03   p_joint 1.193750e-02

Joint ci ratio: 6.316468e-02	ci left: 1.117182e-02	ci right 1.190346e-02	k: 3806	n:330000
Cons ci ratio: 1.138145e-01	ci left: 3.377900e-03	ci right 3.788469e-03	k: 1181	n:330000
KS ci ratio: 9.734211e-03	ci left: 3.278933e-01	ci right 3.311037e-01	k: 108734	n:330000
GOLGB1   330000 perm   207 sec   (1593 perm/sec)   p_kst 3.294970e-01   p_cons 3.578788e-03   p_joint 1.153333e-02

Joint ci ratio: 5.774944e-02	ci left: 1.298430e-02	ci right 1.375932e-02	k: 4545	n:340000
Cons ci ratio: 1.123980e-01	ci left: 3.364288e-03	ci right 3.767775e-03	k: 1211	n:340000
KS ci ratio: 9.586930e-03	ci left: 3.280581e-01	ci right 3.312212e-01	k: 112077	n:340000
GOLGB1   340000 perm   215 sec   (1585 perm/sec)   p_kst 3.296382e-01   p_cons 3.561765e-03   p_joint 1.336765e-02

Joint ci ratio: 5.746676e-02	ci left: 1.274281e-02	ci right 1.349956e-02	k: 4591	n:350000
Cons ci ratio: 1.113485e-01	ci left: 3.332038e-03	ci right 3.727681e-03	k: 1234	n:350000
KS ci ratio: 9.447540e-03	ci left: 3.281483e-01	ci right 3.312660e-01	k: 115397	n:350000
GOLGB1   350000 perm   222 sec   (1577 perm/sec)   p_kst 3.297057e-01   p_cons 3.525714e-03   p_joint 1.311714e-02

Joint ci ratio: 5.545139e-02	ci left: 1.331185e-02	ci right 1.407378e-02	k: 4928	n:360000
Cons ci ratio: 1.098035e-01	ci left: 3.334015e-03	ci right 3.724044e-03	k: 1269	n:360000
KS ci ratio: 9.316049e-03	ci left: 3.281394e-01	ci right 3.312134e-01	k: 118683	n:360000
GOLGB1   360000 perm   230 sec   (1568 perm/sec)   p_kst 3.296750e-01   p_cons 3.525000e-03   p_joint 1.368889e-02

Joint ci ratio: 5.559340e-02	ci left: 1.289070e-02	ci right 1.363047e-02	k: 4905	n:370000
Cons ci ratio: 1.081134e-01	ci left: 3.349070e-03	ci right 3.734446e-03	k: 1309	n:370000
KS ci ratio: 9.189057e-03	ci left: 3.281717e-01	ci right 3.312039e-01	k: 121984	n:370000
GOLGB1   370000 perm   237 sec   (1559 perm/sec)   p_kst 3.296865e-01   p_cons 3.537838e-03   p_joint 1.325676e-02

Joint ci ratio: 5.526188e-02	ci left: 1.270714e-02	ci right 1.343189e-02	k: 4965	n:380000
Cons ci ratio: 1.064991e-01	ci left: 3.363375e-03	ci right 3.744257e-03	k: 1349	n:380000
KS ci ratio: 9.066203e-03	ci left: 3.282474e-01	ci right 3.312395e-01	k: 125302	n:380000
GOLGB1   380000 perm   245 sec   (1549 perm/sec)   p_kst 3.297421e-01   p_cons 3.550000e-03   p_joint 1.306579e-02

Joint ci ratio: 5.554380e-02	ci left: 1.225987e-02	ci right 1.296279e-02	k: 4917	n:390000
Cons ci ratio: 1.048037e-01	ci left: 3.386976e-03	ci right 3.764048e-03	k: 1393	n:390000
KS ci ratio: 8.945605e-03	ci left: 3.284448e-01	ci right 3.313987e-01	k: 128669	n:390000
GOLGB1   390000 perm   254 sec   (1537 perm/sec)   p_kst 3.299205e-01   p_cons 3.571795e-03   p_joint 1.260769e-02

Joint ci ratio: 5.507838e-02	ci left: 1.216045e-02	ci right 1.285164e-02	k: 5001	n:400000
Cons ci ratio: 1.036216e-01	ci left: 3.380216e-03	ci right 3.752032e-03	k: 1425	n:400000
KS ci ratio: 8.834688e-03	ci left: 3.283830e-01	ci right 3.312995e-01	k: 131936	n:400000
GOLGB1   400000 perm   262 sec   (1527 perm/sec)   p_kst 3.298400e-01   p_cons 3.562500e-03   p_joint 1.250250e-02

Joint ci ratio: 5.466797e-02	ci left: 1.204665e-02	ci right 1.272612e-02	k: 5077	n:410000
Cons ci ratio: 1.022326e-01	ci left: 3.390446e-03	ci right 3.758088e-03	k: 1464	n:410000
KS ci ratio: 8.724522e-03	ci left: 3.284900e-01	ci right 3.313709e-01	k: 135271	n:410000
GOLGB1   410000 perm   270 sec   (1519 perm/sec)   p_kst 3.299293e-01   p_cons 3.570732e-03   p_joint 1.238293e-02

Joint ci ratio: 5.419208e-02	ci left: 1.197119e-02	ci right 1.264033e-02	k: 5167	n:420000
Cons ci ratio: 1.008980e-01	ci left: 3.400220e-03	ci right 3.763824e-03	k: 1503	n:420000
KS ci ratio: 8.618006e-03	ci left: 3.286112e-01	ci right 3.314578e-01	k: 138614	n:420000
GOLGB1   420000 perm   278 sec   (1512 perm/sec)   p_kst 3.300333e-01   p_cons 3.578571e-03   p_joint 1.230238e-02

Joint ci ratio: 5.337493e-02	ci left: 1.205759e-02	ci right 1.272109e-02	k: 5326	n:430000
Cons ci ratio: 9.951733e-02	ci left: 3.416373e-03	ci right 3.776413e-03	k: 1545	n:430000
KS ci ratio: 8.516461e-03	ci left: 3.286666e-01	ci right 3.314799e-01	k: 141931	n:430000
GOLGB1   430000 perm   286 sec   (1505 perm/sec)   p_kst 3.300721e-01   p_cons 3.593023e-03   p_joint 1.238605e-02

Outputting figure to mutsig2_images.part000000000072/GOLGB1.20_9864_430000_0.33007_0.003593_0.012386.png
                gene_name: GOLGB1
               theta_stop: 0.100 
                    nperm: 430000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.0036 
      ci_cons_bounds_left: 0.0034 
     ci_cons_bounds_right: 0.0038 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 2 percent done.
GOLGA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.974952e-01	ci left: 3.414726e-02	ci right 4.172496e-02	k: 378	n:10000
Cons ci ratio: 1.083156e-01	ci left: 1.094933e-01	ci right 1.221314e-01	k: 1157	n:10000
KS ci ratio: 2.115267e-01	ci left: 2.968021e-02	ci right 3.679509e-02	k: 331	n:10000
GOLGA4   10000 perm   4 sec   (2810 perm/sec)   p_kst 3.310000e-02   p_cons 1.157000e-01   p_joint 3.780000e-02

Joint ci ratio: 1.397493e-01	ci left: 3.519929e-02	ci right 4.053615e-02	k: 756	n:20000
Cons ci ratio: 8.116213e-02	ci left: 1.001949e-01	ci right 1.087205e-01	k: 2088	n:20000
KS ci ratio: 1.582921e-01	ci left: 2.739088e-02	ci right 3.214714e-02	k: 594	n:20000
GOLGA4   20000 perm   8 sec   (2578 perm/sec)   p_kst 2.970000e-02   p_cons 1.044000e-01   p_joint 3.780000e-02

Joint ci ratio: 1.549027e-01	ci left: 1.927906e-02	ci right 2.254798e-02	k: 626	n:30000
Cons ci ratio: 6.589976e-02	ci left: 1.020126e-01	ci right 1.089973e-01	k: 3164	n:30000
KS ci ratio: 1.299606e-01	ci left: 2.751748e-02	ci right 3.137436e-02	k: 882	n:30000
GOLGA4   30000 perm   12 sec   (2492 perm/sec)   p_kst 2.940000e-02   p_cons 1.054667e-01   p_joint 2.086667e-02

Joint ci ratio: 1.100389e-01	ci left: 2.905546e-02	ci right 3.246311e-02	k: 1229	n:40000
Cons ci ratio: 5.695795e-02	ci left: 1.028513e-01	ci right 1.089060e-01	k: 4234	n:40000
KS ci ratio: 1.127636e-01	ci left: 2.766904e-02	ci right 3.099976e-02	k: 1172	n:40000
GOLGA4   40000 perm   16 sec   (2437 perm/sec)   p_kst 2.930000e-02   p_cons 1.058500e-01   p_joint 3.072500e-02

Joint ci ratio: 1.107111e-01	ci left: 2.310422e-02	ci right 2.583137e-02	k: 1222	n:50000
Cons ci ratio: 5.087366e-02	ci left: 1.034333e-01	ci right 1.088525e-01	k: 5306	n:50000
KS ci ratio: 9.604689e-02	ci left: 3.068941e-02	ci right 3.380521e-02	k: 1611	n:50000
GOLGA4   50000 perm   21 sec   (2397 perm/sec)   p_kst 3.222000e-02   p_cons 1.061200e-01   p_joint 2.444000e-02

Joint ci ratio: 1.063710e-01	ci left: 2.095476e-02	ci right 2.332511e-02	k: 1327	n:60000
Cons ci ratio: 4.645910e-02	ci left: 1.035971e-01	ci right 1.085411e-01	k: 6363	n:60000
KS ci ratio: 8.856715e-02	ci left: 3.021463e-02	ci right 3.303091e-02	k: 1896	n:60000
GOLGA4   60000 perm   25 sec   (2370 perm/sec)   p_kst 3.160000e-02   p_cons 1.060500e-01   p_joint 2.211667e-02

Joint ci ratio: 9.978361e-02	ci left: 2.049399e-02	ci right 2.266021e-02	k: 1509	n:70000
Cons ci ratio: 4.304091e-02	ci left: 1.036580e-01	ci right 1.082318e-01	k: 7415	n:70000
KS ci ratio: 8.150739e-02	ci left: 3.068048e-02	ci right 3.330137e-02	k: 2238	n:70000
GOLGA4   70000 perm   29 sec   (2377 perm/sec)   p_kst 3.197143e-02   p_cons 1.059286e-01   p_joint 2.155714e-02

Outputting figure to mutsig2_images.part000000000072/GOLGA4.14_6883_70000_0.031971_0.10593_0.021557.png
                gene_name: GOLGA4
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.023 

Current progress: 4 percent done.
GOLGA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.491644e-02	ci left: 2.584471e-01	ci right 2.758888e-01	k: 2671	n:10000
Cons ci ratio: 7.402527e-02	ci left: 2.108283e-01	ci right 2.271357e-01	k: 2189	n:10000
KS ci ratio: 9.592170e-02	ci left: 1.361934e-01	ci right 1.500152e-01	k: 1430	n:10000
GOLGA5   10000 perm   2 sec   (4440 perm/sec)   p_kst 1.430000e-01   p_cons 2.189000e-01   p_joint 2.671000e-01

Outputting figure to mutsig2_images.part000000000072/GOLGA5.8_2244_10000_0.143_0.2189_0.2671.png
                gene_name: GOLGA5
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 6 percent done.
GOLIM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.234563e-02	ci left: 4.515919e-01	ci right 4.712306e-01	k: 4614	n:10000
Cons ci ratio: 2.184721e-02	ci left: 7.545395e-01	ci right 7.713071e-01	k: 7630	n:10000
KS ci ratio: 5.893690e-02	ci left: 2.975703e-01	ci right 3.157424e-01	k: 3066	n:10000
GOLIM4   10000 perm   2 sec   (4920 perm/sec)   p_kst 3.066000e-01   p_cons 7.630000e-01   p_joint 4.614000e-01

Outputting figure to mutsig2_images.part000000000072/GOLIM4.8_2155_10000_0.3066_0.763_0.4614.png
                gene_name: GOLIM4
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 8 percent done.
GON4L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.694732e-02	ci left: 4.010349e-01	ci right 4.204171e-01	k: 4107	n:10000
Cons ci ratio: 1.185996e-02	ci left: 9.105972e-01	ci right 9.215590e-01	k: 9162	n:10000
KS ci ratio: 6.425987e-02	ci left: 2.624051e-01	ci right 2.799284e-01	k: 2711	n:10000
GON4L   10000 perm   3 sec   (3072 perm/sec)   p_kst 2.711000e-01   p_cons 9.162000e-01   p_joint 4.107000e-01

Outputting figure to mutsig2_images.part000000000072/GON4L.8_6964_10000_0.2711_0.9162_0.4107.png
                gene_name: GON4L
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 10 percent done.
GMPPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.360087e-02	ci left: 5.666442e-01	ci right 5.861113e-01	k: 5764	n:10000
Cons ci ratio: 2.870566e-02	ci left: 6.414642e-01	ci right 6.602478e-01	k: 6509	n:10000
KS ci ratio: 6.645966e-02	ci left: 2.494459e-01	ci right 2.666952e-01	k: 2580	n:10000
GMPPA   10000 perm   2 sec   (4951 perm/sec)   p_kst 2.580000e-01   p_cons 6.509000e-01   p_joint 5.764000e-01

Outputting figure to mutsig2_images.part000000000072/GMPPA.7_1311_10000_0.258_0.6509_0.5764.png
                gene_name: GMPPA
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 12 percent done.
GNPTAB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.881196e-02	ci left: 4.950504e-01	ci right 5.147467e-01	k: 5049	n:10000
Cons ci ratio: 1.179813e-02	ci left: 9.114205e-01	ci right 9.223352e-01	k: 9170	n:10000
KS ci ratio: 5.584290e-02	ci left: 3.207846e-01	ci right 3.393145e-01	k: 3300	n:10000
GNPTAB   10000 perm   2 sec   (4210 perm/sec)   p_kst 3.300000e-01   p_cons 9.170000e-01   p_joint 5.049000e-01

Outputting figure to mutsig2_images.part000000000072/GNPTAB.7_3855_10000_0.33_0.917_0.5049.png
                gene_name: GNPTAB
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 15 percent done.
GNA14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.864673e-02	ci left: 3.840068e-01	ci right 4.032552e-01	k: 3936	n:10000
Cons ci ratio: 2.641468e-02	ci left: 6.785132e-01	ci right 6.967774e-01	k: 6877	n:10000
KS ci ratio: 7.944208e-02	ci left: 1.879635e-01	ci right 2.036141e-01	k: 1957	n:10000
GNA14   10000 perm   2 sec   (5743 perm/sec)   p_kst 1.957000e-01   p_cons 6.877000e-01   p_joint 3.936000e-01

Outputting figure to mutsig2_images.part000000000072/GNA14.6_1096_10000_0.1957_0.6877_0.3936.png
                gene_name: GNA14
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 17 percent done.
GNAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.243397e-01	ci left: 8.475243e-02	ci right 9.608748e-02	k: 903	n:10000
Cons ci ratio: 1.370683e-01	ci left: 7.039603e-02	ci right 8.085279e-02	k: 755	n:10000
KS ci ratio: 5.584290e-02	ci left: 3.207846e-01	ci right 3.393145e-01	k: 3300	n:10000
GNAS   10000 perm   2 sec   (4349 perm/sec)   p_kst 3.300000e-01   p_cons 7.550000e-02   p_joint 9.030000e-02

Joint ci ratio: 9.399636e-02	ci left: 7.622747e-02	ci right 8.379517e-02	k: 1599	n:20000
Cons ci ratio: 9.396444e-02	ci left: 7.627639e-02	ci right 8.384623e-02	k: 1600	n:20000
KS ci ratio: 3.910172e-02	ci left: 3.278610e-01	ci right 3.409871e-01	k: 6688	n:20000
GNAS   20000 perm   5 sec   (3873 perm/sec)   p_kst 3.344000e-01   p_cons 8.000000e-02   p_joint 7.995000e-02

Outputting figure to mutsig2_images.part000000000072/GNAS.6_4054_20000_0.3344_0.08_0.07995.png
                gene_name: GNAS
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.084 

Current progress: 19 percent done.
GOT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.092556e-01	ci left: 3.034440e-02	ci right 3.753044e-02	k: 338	n:10000
Cons ci ratio: 5.529567e-01	ci left: 3.627180e-03	ci right 6.472945e-03	k: 49	n:10000
KS ci ratio: 4.892293e-02	ci left: 3.813192e-01	ci right 4.005443e-01	k: 3909	n:10000
GOT1   10000 perm   2 sec   (5002 perm/sec)   p_kst 3.909000e-01   p_cons 4.900000e-03   p_joint 3.380000e-02

Joint ci ratio: 2.246120e-01	ci left: 1.331396e-02	ci right 1.672916e-02	k: 299	n:20000
Cons ci ratio: 4.401516e-01	ci left: 3.083972e-03	ci right 4.865021e-03	k: 78	n:20000
KS ci ratio: 3.495575e-02	ci left: 3.792450e-01	ci right 3.927882e-01	k: 7720	n:20000
GOT1   20000 perm   4 sec   (4542 perm/sec)   p_kst 3.860000e-01   p_cons 3.900000e-03   p_joint 1.495000e-02

Joint ci ratio: 1.024832e-01	ci left: 4.411210e-02	ci right 4.890955e-02	k: 1394	n:30000
Cons ci ratio: 3.541719e-01	ci left: 3.347848e-03	ci right 4.817423e-03	k: 121	n:30000
KS ci ratio: 2.814287e-02	ci left: 3.871678e-01	ci right 3.982530e-01	k: 11781	n:30000
GOT1   30000 perm   7 sec   (4357 perm/sec)   p_kst 3.927000e-01   p_cons 4.033333e-03   p_joint 4.646667e-02

Joint ci ratio: 1.127141e-01	ci left: 2.769335e-02	ci right 3.102544e-02	k: 1173	n:40000
Cons ci ratio: 2.948267e-01	ci left: 3.751922e-03	ci right 5.071619e-03	k: 175	n:40000
KS ci ratio: 2.499069e-02	ci left: 3.760626e-01	ci right 3.856047e-01	k: 15233	n:40000
GOT1   40000 perm   9 sec   (4281 perm/sec)   p_kst 3.808250e-01   p_cons 4.375000e-03   p_joint 2.932500e-02

Joint ci ratio: 9.282289e-02	ci left: 3.283913e-02	ci right 3.605522e-02	k: 1721	n:50000
Cons ci ratio: 2.649139e-01	ci left: 3.782748e-03	ci right 4.955943e-03	k: 217	n:50000
KS ci ratio: 2.234429e-02	ci left: 3.767403e-01	ci right 3.852735e-01	k: 19050	n:50000
GOT1   50000 perm   12 sec   (4208 perm/sec)   p_kst 3.810000e-01   p_cons 4.340000e-03   p_joint 3.442000e-02

Joint ci ratio: 8.476519e-02	ci left: 3.295591e-02	ci right 3.588935e-02	k: 2064	n:60000
Cons ci ratio: 2.411852e-01	ci left: 3.854836e-03	ci right 4.927307e-03	k: 262	n:60000
KS ci ratio: 2.041345e-02	ci left: 3.767458e-01	ci right 3.845324e-01	k: 22838	n:60000
GOT1   60000 perm   15 sec   (4086 perm/sec)   p_kst 3.806333e-01   p_cons 4.366667e-03   p_joint 3.440000e-02

Joint ci ratio: 8.016708e-02	ci left: 3.170292e-02	ci right 3.436455e-02	k: 2311	n:70000
Cons ci ratio: 2.273615e-01	ci left: 3.747899e-03	ci right 4.722473e-03	k: 295	n:70000
KS ci ratio: 1.886687e-02	ci left: 3.778423e-01	ci right 3.850532e-01	k: 26701	n:70000
GOT1   70000 perm   18 sec   (3999 perm/sec)   p_kst 3.814429e-01   p_cons 4.214286e-03   p_joint 3.301429e-02

Joint ci ratio: 8.040976e-02	ci left: 2.768871e-02	ci right 3.002063e-02	k: 2307	n:80000
Cons ci ratio: 2.127677e-01	ci left: 3.775506e-03	ci right 4.686025e-03	k: 337	n:80000
KS ci ratio: 1.763739e-02	ci left: 3.783691e-01	ci right 3.851144e-01	k: 30539	n:80000
GOT1   80000 perm   20 sec   (3919 perm/sec)   p_kst 3.817375e-01   p_cons 4.212500e-03   p_joint 2.883750e-02

Joint ci ratio: 8.137858e-02	ci left: 2.410957e-02	ci right 2.616564e-02	k: 2261	n:90000
Cons ci ratio: 2.006657e-01	ci left: 3.798536e-03	ci right 4.656126e-03	k: 379	n:90000
KS ci ratio: 1.665867e-02	ci left: 3.777147e-01	ci right 3.840708e-01	k: 34280	n:90000
GOT1   90000 perm   23 sec   (3863 perm/sec)   p_kst 3.808889e-01   p_cons 4.211111e-03   p_joint 2.512222e-02

Joint ci ratio: 7.555847e-02	ci left: 2.521876e-02	ci right 2.720885e-02	k: 2620	n:100000
Cons ci ratio: 1.904186e-01	ci left: 3.818134e-03	ci right 4.631036e-03	k: 421	n:100000
KS ci ratio: 1.581486e-02	ci left: 3.775492e-01	ci right 3.835777e-01	k: 38056	n:100000
GOT1   100000 perm   26 sec   (3795 perm/sec)   p_kst 3.805600e-01   p_cons 4.210000e-03   p_joint 2.620000e-02

Joint ci ratio: 7.059819e-02	ci left: 2.630027e-02	ci right 2.823386e-02	k: 2998	n:110000
Cons ci ratio: 1.819907e-01	ci left: 3.817722e-03	ci right 4.590596e-03	k: 461	n:110000
KS ci ratio: 1.508635e-02	ci left: 3.774570e-01	ci right 3.832038e-01	k: 41836	n:110000
GOT1   110000 perm   29 sec   (3739 perm/sec)   p_kst 3.803273e-01   p_cons 4.190909e-03   p_joint 2.725455e-02

Joint ci ratio: 7.536119e-02	ci left: 2.121837e-02	ci right 2.288817e-02	k: 2645	n:120000
Cons ci ratio: 1.749414e-01	ci left: 3.802100e-03	ci right 4.538846e-03	k: 499	n:120000
KS ci ratio: 1.442606e-02	ci left: 3.781678e-01	ci right 3.836712e-01	k: 45710	n:120000
GOT1   120000 perm   33 sec   (3683 perm/sec)   p_kst 3.809167e-01   p_cons 4.158333e-03   p_joint 2.204167e-02

Joint ci ratio: 7.406646e-02	ci left: 2.031050e-02	ci right 2.188019e-02	k: 2741	n:130000
Cons ci ratio: 1.689682e-01	ci left: 3.774633e-03	ci right 4.478538e-03	k: 535	n:130000
KS ci ratio: 1.385632e-02	ci left: 3.784050e-01	ci right 3.836926e-01	k: 49536	n:130000
GOT1   130000 perm   36 sec   (3617 perm/sec)   p_kst 3.810462e-01   p_cons 4.115385e-03   p_joint 2.108462e-02

Joint ci ratio: 6.889735e-02	ci left: 2.182078e-02	ci right 2.338480e-02	k: 3163	n:140000
Cons ci ratio: 1.634243e-01	ci left: 3.758309e-03	ci right 4.433914e-03	k: 572	n:140000
KS ci ratio: 1.335037e-02	ci left: 3.785692e-01	ci right 3.836643e-01	k: 53356	n:140000
GOT1   140000 perm   39 sec   (3567 perm/sec)   p_kst 3.811143e-01   p_cons 4.085714e-03   p_joint 2.259286e-02

Joint ci ratio: 6.782042e-02	ci left: 2.104725e-02	ci right 2.253131e-02	k: 3267	n:150000
Cons ci ratio: 1.573598e-01	ci left: 3.795722e-03	ci right 4.450341e-03	k: 617	n:150000
KS ci ratio: 1.289153e-02	ci left: 3.788810e-01	ci right 3.838036e-01	k: 57201	n:150000
GOT1   150000 perm   43 sec   (3512 perm/sec)   p_kst 3.813400e-01   p_cons 4.113333e-03   p_joint 2.178000e-02

Joint ci ratio: 6.441116e-02	ci left: 2.189574e-02	ci right 2.335913e-02	k: 3619	n:160000
Cons ci ratio: 1.512383e-01	ci left: 3.864946e-03	ci right 4.503227e-03	k: 668	n:160000
KS ci ratio: 1.248688e-02	ci left: 3.787818e-01	ci right 3.835475e-01	k: 60986	n:160000
GOT1   160000 perm   46 sec   (3459 perm/sec)   p_kst 3.811625e-01   p_cons 4.175000e-03   p_joint 2.261875e-02

Joint ci ratio: 6.625394e-02	ci left: 1.950756e-02	ci right 2.085005e-02	k: 3429	n:170000
Cons ci ratio: 1.464965e-01	ci left: 3.886783e-03	ci right 4.506784e-03	k: 712	n:170000
KS ci ratio: 1.210676e-02	ci left: 3.791371e-01	ci right 3.837610e-01	k: 64846	n:170000
GOT1   170000 perm   50 sec   (3404 perm/sec)   p_kst 3.814471e-01   p_cons 4.188235e-03   p_joint 2.017059e-02

Joint ci ratio: 6.825530e-02	ci left: 1.737988e-02	ci right 1.861349e-02	k: 3238	n:180000
Cons ci ratio: 1.429350e-01	ci left: 3.863606e-03	ci right 4.463648e-03	k: 748	n:180000
KS ci ratio: 1.176697e-02	ci left: 3.791497e-01	ci right 3.836430e-01	k: 68651	n:180000
GOT1   180000 perm   54 sec   (3354 perm/sec)   p_kst 3.813944e-01   p_cons 4.155556e-03   p_joint 1.798889e-02

Joint ci ratio: 6.849288e-02	ci left: 1.636656e-02	ci right 1.753245e-02	k: 3219	n:190000
Cons ci ratio: 1.390002e-01	ci left: 3.878594e-03	ci right 4.463009e-03	k: 791	n:190000
KS ci ratio: 1.145453e-02	ci left: 3.791520e-01	ci right 3.835253e-01	k: 72454	n:190000
GOT1   190000 perm   57 sec   (3306 perm/sec)   p_kst 3.813368e-01   p_cons 4.163158e-03   p_joint 1.694211e-02

Joint ci ratio: 6.443335e-02	ci left: 1.758420e-02	ci right 1.875982e-02	k: 3633	n:200000
Cons ci ratio: 1.355365e-01	ci left: 3.882625e-03	ci right 4.451894e-03	k: 832	n:200000
KS ci ratio: 1.116952e-02	ci left: 3.789958e-01	ci right 3.832577e-01	k: 76225	n:200000
GOT1   200000 perm   61 sec   (3263 perm/sec)   p_kst 3.811250e-01   p_cons 4.160000e-03   p_joint 1.816500e-02

Joint ci ratio: 6.061187e-02	ci left: 1.893632e-02	ci right 2.012462e-02	k: 4100	n:210000
Cons ci ratio: 1.323195e-01	ci left: 3.886436e-03	ci right 4.441674e-03	k: 873	n:210000
KS ci ratio: 1.090554e-02	ci left: 3.788223e-01	ci right 3.829810e-01	k: 79989	n:210000
GOT1   210000 perm   65 sec   (3217 perm/sec)   p_kst 3.809000e-01   p_cons 4.157143e-03   p_joint 1.952381e-02

Joint ci ratio: 6.106553e-02	ci left: 1.782459e-02	ci right 1.895179e-02	k: 4044	n:220000
Cons ci ratio: 1.298207e-01	ci left: 3.859254e-03	ci right 4.399394e-03	k: 907	n:220000
KS ci ratio: 1.065933e-02	ci left: 3.786703e-01	ci right 3.827328e-01	k: 83754	n:220000
GOT1   220000 perm   70 sec   (3162 perm/sec)   p_kst 3.807000e-01   p_cons 4.122727e-03   p_joint 1.838182e-02

Joint ci ratio: 6.001937e-02	ci left: 1.766189e-02	ci right 1.875900e-02	k: 4187	n:230000
Cons ci ratio: 1.265843e-01	ci left: 3.889259e-03	ci right 4.419009e-03	k: 954	n:230000
KS ci ratio: 1.042119e-02	ci left: 3.788887e-01	ci right 3.828621e-01	k: 87601	n:230000
GOT1   230000 perm   74 sec   (3121 perm/sec)   p_kst 3.808739e-01   p_cons 4.147826e-03   p_joint 1.820435e-02

Joint ci ratio: 5.902510e-02	ci left: 1.751290e-02	ci right 1.858212e-02	k: 4330	n:240000
Cons ci ratio: 1.237647e-01	ci left: 3.904801e-03	ci right 4.423953e-03	k: 998	n:240000
KS ci ratio: 1.019698e-02	ci left: 3.791522e-01	ci right 3.830423e-01	k: 91463	n:240000
GOT1   240000 perm   78 sec   (3078 perm/sec)   p_kst 3.810958e-01   p_cons 4.158333e-03   p_joint 1.804167e-02

Joint ci ratio: 5.883289e-02	ci left: 1.693441e-02	ci right 1.796482e-02	k: 4361	n:250000
Cons ci ratio: 1.220096e-01	ci left: 3.861038e-03	ci right 4.366565e-03	k: 1027	n:250000
KS ci ratio: 9.984351e-03	ci left: 3.795033e-01	ci right 3.833154e-01	k: 95352	n:250000
GOT1   250000 perm   82 sec   (3030 perm/sec)   p_kst 3.814080e-01   p_cons 4.108000e-03   p_joint 1.744400e-02

Joint ci ratio: 5.807912e-02	ci left: 1.671887e-02	ci right 1.772270e-02	k: 4476	n:260000
Cons ci ratio: 1.200991e-01	ci left: 3.835613e-03	ci right 4.329389e-03	k: 1060	n:260000
KS ci ratio: 9.787599e-03	ci left: 3.796784e-01	ci right 3.834166e-01	k: 99202	n:260000
GOT1   260000 perm   87 sec   (2985 perm/sec)   p_kst 3.815462e-01   p_cons 4.076923e-03   p_joint 1.721538e-02

Joint ci ratio: 5.711351e-02	ci left: 1.665815e-02	ci right 1.764115e-02	k: 4629	n:270000
Cons ci ratio: 1.180590e-01	ci left: 3.826507e-03	ci right 4.310160e-03	k: 1097	n:270000
KS ci ratio: 9.599927e-03	ci left: 3.799447e-01	ci right 3.836134e-01	k: 103080	n:270000
GOT1   270000 perm   92 sec   (2942 perm/sec)   p_kst 3.817778e-01   p_cons 4.062963e-03   p_joint 1.714444e-02

Joint ci ratio: 5.592742e-02	ci left: 1.676038e-02	ci right 1.772822e-02	k: 4827	n:280000
Cons ci ratio: 1.153567e-01	ci left: 3.870144e-03	ci right 4.347353e-03	k: 1149	n:280000
KS ci ratio: 9.426572e-03	ci left: 3.799964e-01	ci right 3.835989e-01	k: 106903	n:280000
GOT1   280000 perm   96 sec   (2906 perm/sec)   p_kst 3.817964e-01   p_cons 4.103571e-03   p_joint 1.723929e-02

Joint ci ratio: 5.231962e-02	ci left: 1.849258e-02	ci right 1.948948e-02	k: 5506	n:290000
Cons ci ratio: 1.131631e-01	ci left: 3.887431e-03	ci right 4.357047e-03	k: 1194	n:290000
KS ci ratio: 9.257952e-03	ci left: 3.802655e-01	ci right 3.838058e-01	k: 110790	n:290000
GOT1   290000 perm   101 sec   (2864 perm/sec)   p_kst 3.820345e-01   p_cons 4.117241e-03   p_joint 1.898621e-02

Joint ci ratio: 5.143516e-02	ci left: 1.850457e-02	ci right 1.948475e-02	k: 5697	n:300000
Cons ci ratio: 1.111350e-01	ci left: 3.900403e-03	ci right 4.362590e-03	k: 1238	n:300000
KS ci ratio: 9.103526e-03	ci left: 3.802342e-01	ci right 3.837148e-01	k: 114592	n:300000
GOT1   300000 perm   106 sec   (2820 perm/sec)   p_kst 3.819733e-01   p_cons 4.126667e-03   p_joint 1.899000e-02

Joint ci ratio: 4.923907e-02	ci left: 1.954192e-02	ci right 2.053160e-02	k: 6210	n:310000
Cons ci ratio: 1.097288e-01	ci left: 3.874956e-03	ci right 4.327940e-03	k: 1270	n:310000
KS ci ratio: 8.954314e-03	ci left: 3.803246e-01	ci right 3.837486e-01	k: 118431	n:310000
GOT1   310000 perm   111 sec   (2784 perm/sec)   p_kst 3.820355e-01   p_cons 4.096774e-03   p_joint 2.003226e-02

Joint ci ratio: 4.823514e-02	ci left: 1.973388e-02	ci right 2.071234e-02	k: 6470	n:320000
Cons ci ratio: 1.080834e-01	ci left: 3.872418e-03	ci right 4.317886e-03	k: 1309	n:320000
KS ci ratio: 8.814890e-03	ci left: 3.802661e-01	ci right 3.836360e-01	k: 122224	n:320000
GOT1   320000 perm   116 sec   (2749 perm/sec)   p_kst 3.819500e-01   p_cons 4.090625e-03   p_joint 2.021875e-02

Joint ci ratio: 4.774839e-02	ci left: 1.953702e-02	ci right 2.049568e-02	k: 6604	n:330000
Cons ci ratio: 1.069486e-01	ci left: 3.837635e-03	ci right 4.274175e-03	k: 1337	n:330000
KS ci ratio: 8.680835e-03	ci left: 3.802631e-01	ci right 3.835814e-01	k: 126034	n:330000
GOT1   330000 perm   122 sec   (2716 perm/sec)   p_kst 3.819212e-01   p_cons 4.051515e-03   p_joint 2.001212e-02

Joint ci ratio: 4.817343e-02	ci left: 1.864255e-02	ci right 1.956568e-02	k: 6494	n:340000
Cons ci ratio: 1.051554e-01	ci left: 3.856471e-03	ci right 4.287343e-03	k: 1383	n:340000
KS ci ratio: 8.552715e-03	ci left: 3.802606e-01	ci right 3.835297e-01	k: 129844	n:340000
GOT1   340000 perm   127 sec   (2682 perm/sec)   p_kst 3.818941e-01   p_cons 4.067647e-03   p_joint 1.910000e-02

Joint ci ratio: 4.730753e-02	ci left: 1.878464e-02	ci right 1.969763e-02	k: 6733	n:350000
Cons ci ratio: 1.039249e-01	ci left: 3.838105e-03	ci right 4.261600e-03	k: 1416	n:350000
KS ci ratio: 8.431330e-03	ci left: 3.801900e-01	ci right 3.834119e-01	k: 133630	n:350000
GOT1   350000 perm   132 sec   (2651 perm/sec)   p_kst 3.818000e-01   p_cons 4.045714e-03   p_joint 1.923714e-02

Joint ci ratio: 4.684068e-02	ci left: 1.863614e-02	ci right 1.953273e-02	k: 6869	n:360000
Cons ci ratio: 1.025946e-01	ci left: 3.831613e-03	ci right 4.248654e-03	k: 1453	n:360000
KS ci ratio: 8.312427e-03	ci left: 3.802681e-01	ci right 3.834449e-01	k: 137468	n:360000
GOT1   360000 perm   137 sec   (2622 perm/sec)   p_kst 3.818556e-01   p_cons 4.036111e-03   p_joint 1.908056e-02

Joint ci ratio: 4.573941e-02	ci left: 1.901946e-02	ci right 1.991241e-02	k: 7201	n:370000
Cons ci ratio: 1.014508e-01	ci left: 3.814968e-03	ci right 4.225292e-03	k: 1486	n:370000
KS ci ratio: 8.196210e-03	ci left: 3.804691e-01	ci right 3.836030e-01	k: 141353	n:370000
GOT1   370000 perm   143 sec   (2592 perm/sec)   p_kst 3.820351e-01   p_cons 4.016216e-03   p_joint 1.946216e-02

Joint ci ratio: 4.497768e-02	ci left: 1.915640e-02	ci right 2.004042e-02	k: 7446	n:380000
Cons ci ratio: 1.003776e-01	ci left: 3.796657e-03	ci right 4.200438e-03	k: 1518	n:380000
KS ci ratio: 8.086852e-03	ci left: 3.805363e-01	ci right 3.836287e-01	k: 145191	n:380000
GOT1   380000 perm   148 sec   (2563 perm/sec)   p_kst 3.820816e-01   p_cons 3.994737e-03   p_joint 1.959474e-02

Joint ci ratio: 4.445956e-02	ci left: 1.910890e-02	ci right 1.998031e-02	k: 7621	n:390000
Cons ci ratio: 9.911345e-02	ci left: 3.796812e-03	ci right 4.195228e-03	k: 1557	n:390000
KS ci ratio: 7.979721e-03	ci left: 3.807207e-01	ci right 3.837734e-01	k: 149076	n:390000
GOT1   390000 perm   154 sec   (2533 perm/sec)   p_kst 3.822462e-01   p_cons 3.992308e-03   p_joint 1.954103e-02

Outputting figure to mutsig2_images.part000000000072/GOT1.6_1278_390000_0.38225_0.0039923_0.019541.png
                gene_name: GOT1
               theta_stop: 0.099 
                    nperm: 390000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.0040 
      ci_cons_bounds_left: 0.0038 
     ci_cons_bounds_right: 0.0042 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 21 percent done.
GP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.659928e-02	ci left: 6.754905e-01	ci right 6.938018e-01	k: 6847	n:10000
Cons ci ratio: 3.449668e-02	ci left: 5.537122e-01	ci right 5.732508e-01	k: 5635	n:10000
KS ci ratio: 5.795385e-02	ci left: 3.047104e-01	ci right 3.229982e-01	k: 3138	n:10000
GP5   10000 perm   2 sec   (5249 perm/sec)   p_kst 3.138000e-01   p_cons 5.635000e-01   p_joint 6.847000e-01

Outputting figure to mutsig2_images.part000000000072/GP5.6_1687_10000_0.3138_0.5635_0.6847.png
                gene_name: GP5
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 23 percent done.
GMPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.956429e-02	ci left: 1.274785e-01	ci right 1.409354e-01	k: 1341	n:10000
Cons ci ratio: 2.625495e-02	ci left: 6.811333e-01	ci right 6.993558e-01	k: 6903	n:10000
KS ci ratio: 1.161806e-01	ci left: 9.623212e-02	ci right 1.082007e-01	k: 1021	n:10000
GMPS   10000 perm   2 sec   (5125 perm/sec)   p_kst 1.021000e-01   p_cons 6.903000e-01   p_joint 1.341000e-01

Joint ci ratio: 7.409931e-02	ci left: 1.181830e-01	ci right 1.273270e-01	k: 2454	n:20000
Cons ci ratio: 1.856345e-02	ci left: 6.838900e-01	ci right 6.967547e-01	k: 13807	n:20000
KS ci ratio: 8.184185e-02	ci left: 9.867308e-02	ci right 1.071428e-01	k: 2057	n:20000
GMPS   20000 perm   4 sec   (4631 perm/sec)   p_kst 1.028500e-01   p_cons 6.903500e-01   p_joint 1.227000e-01

Outputting figure to mutsig2_images.part000000000072/GMPS.5_2146_20000_0.10285_0.69035_0.1227.png
                gene_name: GMPS
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 25 percent done.
GNAO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.073045e-02	ci left: 2.850816e-01	ci right 3.030385e-01	k: 2940	n:10000
Cons ci ratio: 1.787134e-01	ci left: 4.178548e-02	ci right 5.008162e-02	k: 458	n:10000
KS ci ratio: 5.385802e-02	ci left: 3.368712e-01	ci right 3.556184e-01	k: 3462	n:10000
GNAO1   10000 perm   2 sec   (5346 perm/sec)   p_kst 3.462000e-01   p_cons 4.580000e-02   p_joint 2.940000e-01

Joint ci ratio: 4.311436e-02	ci left: 2.861015e-01	ci right 2.987588e-01	k: 5848	n:20000
Cons ci ratio: 1.258701e-01	ci left: 4.333189e-02	ci right 4.920094e-02	k: 924	n:20000
KS ci ratio: 3.815913e-02	ci left: 3.387581e-01	ci right 3.519868e-01	k: 6907	n:20000
GNAO1   20000 perm   4 sec   (4547 perm/sec)   p_kst 3.453500e-01   p_cons 4.620000e-02   p_joint 2.924000e-01

Joint ci ratio: 3.538081e-02	ci left: 2.852007e-01	ci right 2.955066e-01	k: 8710	n:30000
Cons ci ratio: 1.032226e-01	ci left: 4.349433e-02	ci right 4.826078e-02	k: 1375	n:30000
KS ci ratio: 3.132054e-02	ci left: 3.376270e-01	ci right 3.484034e-01	k: 10290	n:30000
GNAO1   30000 perm   7 sec   (4330 perm/sec)   p_kst 3.430000e-01   p_cons 4.583333e-02   p_joint 2.903333e-01

Joint ci ratio: 3.048468e-02	ci left: 2.879949e-01	ci right 2.969353e-01	k: 11698	n:40000
Cons ci ratio: 8.882856e-02	ci left: 4.435910e-02	ci right 4.850707e-02	k: 1856	n:40000
KS ci ratio: 2.706631e-02	ci left: 3.393187e-01	ci right 3.486539e-01	k: 13759	n:40000
GNAO1   40000 perm   9 sec   (4304 perm/sec)   p_kst 3.439750e-01   p_cons 4.640000e-02   p_joint 2.924500e-01

Outputting figure to mutsig2_images.part000000000072/GNAO1.5_1447_40000_0.34397_0.0464_0.29245.png
                gene_name: GNAO1
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 27 percent done.
GNAI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.018103e-01	ci left: 1.224889e-01	ci right 1.357280e-01	k: 1290	n:10000
Cons ci ratio: 1.943197e-01	ci left: 3.529041e-02	ci right 4.298104e-02	k: 390	n:10000
KS ci ratio: 7.966982e-02	ci left: 1.870774e-01	ci right 2.027008e-01	k: 1948	n:10000
GNAI1   10000 perm   2 sec   (5845 perm/sec)   p_kst 1.948000e-01   p_cons 3.900000e-02   p_joint 1.290000e-01

Joint ci ratio: 1.449005e-01	ci left: 3.273699e-02	ci right 3.789925e-02	k: 705	n:20000
Cons ci ratio: 1.382379e-01	ci left: 3.597246e-02	ci right 4.136272e-02	k: 772	n:20000
KS ci ratio: 5.732409e-02	ci left: 1.840396e-01	ci right 1.949509e-01	k: 3789	n:20000
GNAI1   20000 perm   4 sec   (5367 perm/sec)   p_kst 1.894500e-01   p_cons 3.860000e-02   p_joint 3.525000e-02

Joint ci ratio: 1.052841e-01	ci left: 4.183673e-02	ci right 4.651873e-02	k: 1324	n:30000
Cons ci ratio: 1.136126e-01	ci left: 3.599430e-02	ci right 4.036239e-02	k: 1144	n:30000
KS ci ratio: 4.480233e-02	ci left: 1.987251e-01	ci right 2.078658e-01	k: 6098	n:30000
GNAI1   30000 perm   6 sec   (5136 perm/sec)   p_kst 2.032667e-01   p_cons 3.813333e-02   p_joint 4.413333e-02

Joint ci ratio: 9.576977e-02	ci left: 3.827156e-02	ci right 4.214555e-02	k: 1607	n:40000
Cons ci ratio: 9.841413e-02	ci left: 3.626945e-02	ci right 4.004798e-02	k: 1525	n:40000
KS ci ratio: 3.885101e-02	ci left: 1.989185e-01	ci right 2.068247e-01	k: 8114	n:40000
GNAI1   40000 perm   8 sec   (4923 perm/sec)   p_kst 2.028500e-01   p_cons 3.812500e-02   p_joint 4.017500e-02

Outputting figure to mutsig2_images.part000000000072/GNAI1.4_1097_40000_0.20285_0.038125_0.040175.png
                gene_name: GNAI1
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.042 

Current progress: 29 percent done.
GNAL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.654465e-02	ci left: 3.153259e-01	ci right 3.337764e-01	k: 3245	n:10000
Cons ci ratio: 6.427613e-02	ci left: 2.623061e-01	ci right 2.798274e-01	k: 2710	n:10000
KS ci ratio: 7.815390e-02	ci left: 1.930849e-01	ci right 2.088897e-01	k: 2009	n:10000
GNAL   10000 perm   2 sec   (5301 perm/sec)   p_kst 2.009000e-01   p_cons 2.710000e-01   p_joint 3.245000e-01

Outputting figure to mutsig2_images.part000000000072/GNAL.4_1574_10000_0.2009_0.271_0.3245.png
                gene_name: GNAL
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 31 percent done.
GNAQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.968114e-02	ci left: 3.740545e-01	ci right 3.932134e-01	k: 3836	n:10000
Cons ci ratio: 6.545109e-02	ci left: 2.552813e-01	ci right 2.726564e-01	k: 2639	n:10000
KS ci ratio: 4.273958e-02	ci left: 4.470006e-01	ci right 4.666246e-01	k: 4568	n:10000
GNAQ   10000 perm   2 sec   (5160 perm/sec)   p_kst 4.568000e-01   p_cons 2.639000e-01   p_joint 3.836000e-01

Outputting figure to mutsig2_images.part000000000072/GNAQ.4_1108_10000_0.4568_0.2639_0.3836.png
                gene_name: GNAQ
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 33 percent done.
GNL3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.053044e-03	ci left: 9.736569e-01	ci right 9.796610e-01	k: 9768	n:10000
Cons ci ratio: 2.502725e-02	ci left: 7.013997e-01	ci right 7.192776e-01	k: 7104	n:10000
KS ci ratio: 2.342837e-02	ci left: 7.280508e-01	ci right 7.454111e-01	k: 7368	n:10000
GNL3L   10000 perm   2 sec   (5134 perm/sec)   p_kst 7.368000e-01   p_cons 7.104000e-01   p_joint 9.768000e-01

Outputting figure to mutsig2_images.part000000000072/GNL3L.4_1809_10000_0.7368_0.7104_0.9768.png
                gene_name: GNL3L
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 35 percent done.
GNRHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.624928e-02	ci left: 8.463146e-01	ci right 8.602789e-01	k: 8534	n:10000
KS ci ratio: 1.022202e-02	ci left: 9.314385e-01	ci right 9.411054e-01	k: 9364	n:10000
GNRHR   10000 perm   2 sec   (5696 perm/sec)   p_kst 9.364000e-01   p_cons 8.534000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GNRHR.4_999_10000_0.9364_0.8534_1.png
                gene_name: GNRHR
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
GNS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.921521e-02	ci left: 2.955875e-01	ci right 3.137265e-01	k: 3046	n:10000
Cons ci ratio: 3.787610e-02	ci left: 5.072521e-01	ci right 5.269379e-01	k: 5171	n:10000
KS ci ratio: 7.600619e-02	ci left: 2.020522e-01	ci right 2.181170e-01	k: 2100	n:10000
GNS   10000 perm   2 sec   (5408 perm/sec)   p_kst 2.100000e-01   p_cons 5.171000e-01   p_joint 3.046000e-01

Outputting figure to mutsig2_images.part000000000072/GNS.4_1715_10000_0.21_0.5171_0.3046.png
                gene_name: GNS
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 40 percent done.
GOLGA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.624798e-02	ci left: 5.291699e-01	ci right 5.488074e-01	k: 5390	n:10000
Cons ci ratio: 4.887162e-02	ci left: 3.818169e-01	ci right 4.010464e-01	k: 3914	n:10000
KS ci ratio: 5.632616e-02	ci left: 3.170130e-01	ci right 3.354883e-01	k: 3262	n:10000
GOLGA2   10000 perm   2 sec   (4564 perm/sec)   p_kst 3.262000e-01   p_cons 3.914000e-01   p_joint 5.390000e-01

Outputting figure to mutsig2_images.part000000000072/GOLGA2.4_3113_10000_0.3262_0.3914_0.539.png
                gene_name: GOLGA2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 42 percent done.
GORASP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.992891e-02	ci left: 6.221590e-01	ci right 6.411643e-01	k: 6317	n:10000
Cons ci ratio: 5.048895e-02	ci left: 3.664936e-01	ci right 3.855787e-01	k: 3760	n:10000
KS ci ratio: 3.341548e-02	ci left: 5.693517e-01	ci right 5.888022e-01	k: 5791	n:10000
GORASP1   10000 perm   2 sec   (5525 perm/sec)   p_kst 5.791000e-01   p_cons 3.760000e-01   p_joint 6.317000e-01

Outputting figure to mutsig2_images.part000000000072/GORASP1.4_1359_10000_0.5791_0.376_0.6317.png
                gene_name: GORASP1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 44 percent done.
GP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.211664e-02	ci left: 5.886139e-01	ci right 6.079288e-01	k: 5983	n:10000
Cons ci ratio: 4.068814e-02	ci left: 4.714637e-01	ci right 4.911472e-01	k: 4813	n:10000
KS ci ratio: 3.675415e-02	ci left: 5.222622e-01	ci right 5.419191e-01	k: 5321	n:10000
GP2   10000 perm   2 sec   (5787 perm/sec)   p_kst 5.321000e-01   p_cons 4.813000e-01   p_joint 5.983000e-01

Outputting figure to mutsig2_images.part000000000072/GP2.4_1658_10000_0.5321_0.4813_0.5983.png
                gene_name: GP2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 46 percent done.
GNA15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
Cons ci ratio: 1.434278e-01	ci left: 6.449503e-02	ci right 7.455749e-02	k: 694	n:10000
KS ci ratio: 8.701508e-02	ci left: 1.613092e-01	ci right 1.760843e-01	k: 1686	n:10000
GNA15   10000 perm   2 sec   (5189 perm/sec)   p_kst 1.686000e-01   p_cons 6.940000e-02   p_joint 6.170000e-02

Joint ci ratio: 7.816569e-02	ci left: 1.073170e-01	ci right 1.160963e-01	k: 2233	n:20000
Cons ci ratio: 1.019341e-01	ci left: 6.532996e-02	ci right 7.239601e-02	k: 1376	n:20000
KS ci ratio: 6.228641e-02	ci left: 1.601266e-01	ci right 1.704709e-01	k: 3305	n:20000
GNA15   20000 perm   4 sec   (4849 perm/sec)   p_kst 1.652500e-01   p_cons 6.880000e-02   p_joint 1.116500e-01

Joint ci ratio: 6.955629e-02	ci left: 9.239370e-02	ci right 9.908482e-02	k: 2871	n:30000
Cons ci ratio: 8.728080e-02	ci left: 6.024376e-02	ci right 6.577457e-02	k: 1889	n:30000
KS ci ratio: 5.061255e-02	ci left: 1.623993e-01	ci right 1.708654e-01	k: 4998	n:30000
GNA15   30000 perm   6 sec   (4666 perm/sec)   p_kst 1.666000e-01   p_cons 6.296667e-02   p_joint 9.570000e-02

Outputting figure to mutsig2_images.part000000000072/GNA15.3_1153_30000_0.1666_0.062967_0.0957.png
                gene_name: GNA15
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.099 

Current progress: 48 percent done.
GNAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.122226e-02	ci left: 6.021669e-01	ci right 6.213680e-01	k: 6118	n:10000
KS ci ratio: 2.862361e-02	ci left: 6.427720e-01	ci right 6.615393e-01	k: 6522	n:10000
GNAT2   10000 perm   2 sec   (6192 perm/sec)   p_kst 6.522000e-01   p_cons 6.118000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GNAT2.3_1097_10000_0.6522_0.6118_1.png
                gene_name: GNAT2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
GNB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.160559e-02	ci left: 7.585873e-01	ci right 7.752569e-01	k: 7670	n:10000
Cons ci ratio: 4.958674e-02	ci left: 3.749500e-01	ci right 3.941173e-01	k: 3845	n:10000
KS ci ratio: 3.207657e-02	ci left: 5.892161e-01	ci right 6.085262e-01	k: 5989	n:10000
GNB3   10000 perm   2 sec   (5249 perm/sec)   p_kst 5.989000e-01   p_cons 3.845000e-01   p_joint 7.670000e-01

Outputting figure to mutsig2_images.part000000000072/GNB3.3_1059_10000_0.5989_0.3845_0.767.png
                gene_name: GNB3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 52 percent done.
GNB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.873843e-02	ci left: 2.368921e-01	ci right 2.538565e-01	k: 2453	n:10000
Cons ci ratio: 4.625609e-02	ci left: 4.082083e-01	ci right 4.276396e-01	k: 4179	n:10000
KS ci ratio: 7.901581e-02	ci left: 1.896376e-01	ci right 2.053390e-01	k: 1974	n:10000
GNB4   10000 perm   2 sec   (5108 perm/sec)   p_kst 1.974000e-01   p_cons 4.179000e-01   p_joint 2.453000e-01

Outputting figure to mutsig2_images.part000000000072/GNB4.3_1059_10000_0.1974_0.4179_0.2453.png
                gene_name: GNB4
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 54 percent done.
GNL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.380435e-03	ci left: 9.787712e-01	ci right 9.841431e-01	k: 9816	n:10000
Cons ci ratio: 3.421012e-02	ci left: 5.578216e-01	ci right 5.773390e-01	k: 5676	n:10000
KS ci ratio: 3.529587e-02	ci left: 5.423897e-01	ci right 5.619799e-01	k: 5522	n:10000
GNL2   10000 perm   2 sec   (5360 perm/sec)   p_kst 5.522000e-01   p_cons 5.676000e-01   p_joint 9.816000e-01

Outputting figure to mutsig2_images.part000000000072/GNL2.3_2260_10000_0.5522_0.5676_0.9816.png
                gene_name: GNL2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 56 percent done.
GNL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.503433e-03	ci left: 9.699492e-01	ci right 9.763711e-01	k: 9733	n:10000
Cons ci ratio: 4.862636e-02	ci left: 3.842059e-01	ci right 4.034560e-01	k: 3938	n:10000
KS ci ratio: 2.682742e-02	ci left: 6.717631e-01	ci right 6.901314e-01	k: 6810	n:10000
GNL3   10000 perm   2 sec   (5348 perm/sec)   p_kst 6.810000e-01   p_cons 3.938000e-01   p_joint 9.733000e-01

Outputting figure to mutsig2_images.part000000000072/GNL3.3_1710_10000_0.681_0.3938_0.9733.png
                gene_name: GNL3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 58 percent done.
GOLGA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.210775e-03	ci left: 9.723839e-01	ci right 9.785348e-01	k: 9756	n:10000
Cons ci ratio: 2.740328e-02	ci left: 6.623971e-01	ci right 6.809028e-01	k: 6717	n:10000
KS ci ratio: 2.809562e-02	ci left: 6.512237e-01	ci right 6.698827e-01	k: 6606	n:10000
GOLGA1   10000 perm   2 sec   (5750 perm/sec)   p_kst 6.606000e-01   p_cons 6.717000e-01   p_joint 9.756000e-01

Outputting figure to mutsig2_images.part000000000072/GOLGA1.3_2388_10000_0.6606_0.6717_0.9756.png
                gene_name: GOLGA1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 60 percent done.
GOLGA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.355343e-03	ci left: 9.855591e-01	ci right 9.899499e-01	k: 9879	n:10000
Cons ci ratio: 3.645266e-02	ci left: 5.263665e-01	ci right 5.460124e-01	k: 5362	n:10000
KS ci ratio: 6.013027e-03	ci left: 9.739755e-01	ci right 9.799422e-01	k: 9771	n:10000
GOLGA3   10000 perm   3 sec   (3802 perm/sec)   p_kst 9.771000e-01   p_cons 5.362000e-01   p_joint 9.879000e-01

Outputting figure to mutsig2_images.part000000000072/GOLGA3.3_4727_10000_0.9771_0.5362_0.9879.png
                gene_name: GOLGA3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 62 percent done.
GOLGA7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.983924e-02	ci left: 7.880677e-01	ci right 8.039595e-01	k: 7961	n:10000
Cons ci ratio: 5.004015e-02	ci left: 3.706717e-01	ci right 3.897981e-01	k: 3802	n:10000
KS ci ratio: 3.157165e-02	ci left: 5.968452e-01	ci right 6.160928e-01	k: 6065	n:10000
GOLGA7B   10000 perm   1 sec   (7167 perm/sec)   p_kst 6.065000e-01   p_cons 3.802000e-01   p_joint 7.961000e-01

Outputting figure to mutsig2_images.part000000000072/GOLGA7B.3_524_10000_0.6065_0.3802_0.7961.png
                gene_name: GOLGA7B
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 65 percent done.
GOLM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.517326e-02	ci left: 6.989787e-01	ci right 7.169000e-01	k: 7080	n:10000
Cons ci ratio: 5.827831e-02	ci left: 3.023301e-01	ci right 3.205799e-01	k: 3114	n:10000
KS ci ratio: 6.158604e-03	ci left: 9.728080e-01	ci right 9.789104e-01	k: 9760	n:10000
GOLM1   10000 perm   2 sec   (6145 perm/sec)   p_kst 9.760000e-01   p_cons 3.114000e-01   p_joint 7.080000e-01

Outputting figure to mutsig2_images.part000000000072/GOLM1.3_1242_10000_0.976_0.3114_0.708.png
                gene_name: GOLM1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 67 percent done.
GOLPH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.325685e-02	ci left: 3.419380e-01	ci right 3.607487e-01	k: 3513	n:10000
Cons ci ratio: 2.754627e-02	ci left: 6.600814e-01	ci right 6.786198e-01	k: 6694	n:10000
KS ci ratio: 8.928483e-02	ci left: 1.543368e-01	ci right 1.688609e-01	k: 1615	n:10000
GOLPH3   10000 perm   2 sec   (6407 perm/sec)   p_kst 1.615000e-01   p_cons 6.694000e-01   p_joint 3.513000e-01

Outputting figure to mutsig2_images.part000000000072/GOLPH3.3_913_10000_0.1615_0.6694_0.3513.png
                gene_name: GOLPH3
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 69 percent done.
GOPC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.171582e-02	ci left: 3.553558e-01	ci right 3.743230e-01	k: 3648	n:10000
Cons ci ratio: 4.172899e-02	ci left: 4.588797e-01	ci right 4.785385e-01	k: 4687	n:10000
KS ci ratio: 7.329722e-02	ci left: 2.141824e-01	ci right 2.305796e-01	k: 2223	n:10000
GOPC   10000 perm   2 sec   (5414 perm/sec)   p_kst 2.223000e-01   p_cons 4.687000e-01   p_joint 3.648000e-01

Outputting figure to mutsig2_images.part000000000072/GOPC.3_1425_10000_0.2223_0.4687_0.3648.png
                gene_name: GOPC
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 71 percent done.
GOSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
Cons ci ratio: 2.870972e-01	ci left: 1.567108e-02	ci right 2.101476e-02	k: 182	n:10000
KS ci ratio: 2.191527e-01	ci left: 2.759554e-02	ci right 3.448123e-02	k: 309	n:10000
GOSR1   10000 perm   2 sec   (5830 perm/sec)   p_kst 3.090000e-02   p_cons 1.820000e-02   p_joint 1.300000e-03

Joint ci ratio: 2.216308e-01	ci left: 1.369190e-02	ci right 1.715108e-02	k: 307	n:20000
Cons ci ratio: 2.002444e-01	ci left: 1.691536e-02	ci right 2.072636e-02	k: 375	n:20000
KS ci ratio: 1.494591e-01	ci left: 3.076009e-02	ci right 3.577680e-02	k: 664	n:20000
GOSR1   20000 perm   4 sec   (5260 perm/sec)   p_kst 3.320000e-02   p_cons 1.875000e-02   p_joint 1.535000e-02

Joint ci ratio: 1.831899e-01	ci left: 1.365498e-02	ci right 1.644009e-02	k: 450	n:30000
Cons ci ratio: 1.633527e-01	ci left: 1.729317e-02	ci right 2.040101e-02	k: 564	n:30000
KS ci ratio: 1.223194e-01	ci left: 3.107192e-02	ci right 3.515248e-02	k: 992	n:30000
GOSR1   30000 perm   6 sec   (4987 perm/sec)   p_kst 3.306667e-02   p_cons 1.880000e-02   p_joint 1.500000e-02

Joint ci ratio: 1.346445e-01	ci left: 1.935127e-02	ci right 2.216890e-02	k: 829	n:40000
Cons ci ratio: 1.418846e-01	ci left: 1.739501e-02	ci right 2.007550e-02	k: 748	n:40000
KS ci ratio: 1.056847e-01	ci left: 3.149009e-02	ci right 3.502809e-02	k: 1329	n:40000
GOSR1   40000 perm   8 sec   (4844 perm/sec)   p_kst 3.322500e-02   p_cons 1.870000e-02   p_joint 2.072500e-02

Joint ci ratio: 1.373041e-01	ci left: 1.493767e-02	ci right 1.715903e-02	k: 801	n:50000
Cons ci ratio: 1.260340e-01	ci left: 1.778255e-02	ci right 2.019375e-02	k: 948	n:50000
KS ci ratio: 9.504620e-02	ci left: 3.133413e-02	ci right 3.448041e-02	k: 1644	n:50000
GOSR1   50000 perm   11 sec   (4650 perm/sec)   p_kst 3.288000e-02   p_cons 1.896000e-02   p_joint 1.602000e-02

Joint ci ratio: 1.094000e-01	ci left: 1.980271e-02	ci right 2.211062e-02	k: 1256	n:60000
Cons ci ratio: 1.158225e-01	ci left: 1.764727e-02	ci right 1.983296e-02	k: 1123	n:60000
KS ci ratio: 8.622453e-02	ci left: 3.186233e-02	ci right 3.474970e-02	k: 1997	n:60000
GOSR1   60000 perm   13 sec   (4522 perm/sec)   p_kst 3.328333e-02   p_cons 1.871667e-02   p_joint 2.093333e-02

Joint ci ratio: 1.013025e-01	ci left: 1.988091e-02	ci right 2.201621e-02	k: 1465	n:70000
Cons ci ratio: 1.072865e-01	ci left: 1.770934e-02	ci right 1.973084e-02	k: 1309	n:70000
KS ci ratio: 7.993497e-02	ci left: 3.188503e-02	ci right 3.455384e-02	k: 2324	n:70000
GOSR1   70000 perm   16 sec   (4446 perm/sec)   p_kst 3.320000e-02   p_cons 1.870000e-02   p_joint 2.092857e-02

Joint ci ratio: 9.457063e-02	ci left: 2.002978e-02	ci right 2.203017e-02	k: 1681	n:80000
Cons ci ratio: 1.009133e-01	ci left: 1.757748e-02	ci right 1.945766e-02	k: 1480	n:80000
KS ci ratio: 7.500838e-02	ci left: 3.177284e-02	ci right 3.426117e-02	k: 2640	n:80000
GOSR1   80000 perm   18 sec   (4361 perm/sec)   p_kst 3.300000e-02   p_cons 1.850000e-02   p_joint 2.101250e-02

Joint ci ratio: 8.912002e-02	ci left: 2.010575e-02	ci right 2.199196e-02	k: 1893	n:90000
Cons ci ratio: 9.502948e-02	ci left: 1.767304e-02	ci right 1.944707e-02	k: 1669	n:90000
KS ci ratio: 7.090547e-02	ci left: 3.167863e-02	ci right 3.401827e-02	k: 2955	n:90000
GOSR1   90000 perm   21 sec   (4277 perm/sec)   p_kst 3.283333e-02   p_cons 1.854444e-02   p_joint 2.103333e-02

Outputting figure to mutsig2_images.part000000000072/GOSR1.3_789_90000_0.032833_0.018544_0.021033.png
                gene_name: GOSR1
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 73 percent done.
GOSR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.692518e-02	ci left: 8.356181e-01	ci right 8.499816e-01	k: 8429	n:10000
KS ci ratio: 3.393222e-02	ci left: 5.618315e-01	ci right 5.813268e-01	k: 5716	n:10000
GOSR2   10000 perm   2 sec   (6068 perm/sec)   p_kst 5.716000e-01   p_cons 8.429000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GOSR2.3_837_10000_0.5716_0.8429_1.png
                gene_name: GOSR2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
GMPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.034147e-02	ci left: 9.299902e-01	ci right 9.397546e-01	k: 9350	n:10000
Cons ci ratio: 5.598589e-03	ci left: 9.771688e-01	ci right 9.827467e-01	k: 9801	n:10000
KS ci ratio: 4.029907e-02	ci left: 4.762592e-01	ci right 4.959489e-01	k: 4861	n:10000
GMPR   10000 perm   2 sec   (6405 perm/sec)   p_kst 4.861000e-01   p_cons 9.801000e-01   p_joint 9.350000e-01

Outputting figure to mutsig2_images.part000000000072/GMPR.2_1074_10000_0.4861_0.9801_0.935.png
                gene_name: GMPR
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 77 percent done.
GMPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.096618e-02	ci left: 4.680674e-01	ci right 4.877455e-01	k: 4779	n:10000
KS ci ratio: 2.460821e-02	ci left: 7.083616e-01	ci right 7.261116e-01	k: 7173	n:10000
GMPR2   10000 perm   2 sec   (6110 perm/sec)   p_kst 7.173000e-01   p_cons 4.779000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GMPR2.2_1137_10000_0.7173_0.4779_1.png
                gene_name: GMPR2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
GNA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.972923e-02	ci left: 7.898932e-01	ci right 8.057329e-01	k: 7979	n:10000
Cons ci ratio: 3.464415e-02	ci left: 5.516076e-01	ci right 5.711566e-01	k: 5614	n:10000
KS ci ratio: 4.921176e-02	ci left: 3.785325e-01	ci right 3.977327e-01	k: 3881	n:10000
GNA12   10000 perm   2 sec   (6309 perm/sec)   p_kst 3.881000e-01   p_cons 5.614000e-01   p_joint 7.979000e-01

Outputting figure to mutsig2_images.part000000000072/GNA12.2_1162_10000_0.3881_0.5614_0.7979.png
                gene_name: GNA12
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 81 percent done.
GNA13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.264552e-02	ci left: 8.999060e-01	ci right 9.114564e-01	k: 9058	n:10000
Cons ci ratio: 7.746257e-03	ci left: 9.585892e-01	ci right 9.661384e-01	k: 9625	n:10000
KS ci ratio: 2.969142e-02	ci left: 6.258780e-01	ci right 6.448431e-01	k: 6354	n:10000
GNA13   10000 perm   2 sec   (6197 perm/sec)   p_kst 6.354000e-01   p_cons 9.625000e-01   p_joint 9.058000e-01

Outputting figure to mutsig2_images.part000000000072/GNA13.2_1150_10000_0.6354_0.9625_0.9058.png
                gene_name: GNA13
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 83 percent done.
GNAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.237174e-02	ci left: 1.455058e-01	ci right 1.596972e-01	k: 1525	n:10000
Cons ci ratio: 1.148091e-01	ci left: 9.837525e-02	ci right 1.104563e-01	k: 1043	n:10000
KS ci ratio: 1.606061e-02	ci left: 8.492710e-01	ci right 8.631208e-01	k: 8563	n:10000
GNAT1   10000 perm   2 sec   (5801 perm/sec)   p_kst 8.563000e-01   p_cons 1.043000e-01   p_joint 1.525000e-01

Joint ci ratio: 4.965182e-02	ci left: 2.316653e-01	ci right 2.435111e-01	k: 4751	n:20000
Cons ci ratio: 8.181969e-02	ci left: 9.872217e-02	ci right 1.071937e-01	k: 2058	n:20000
KS ci ratio: 1.152362e-02	ci left: 8.476614e-01	ci right 8.575359e-01	k: 17053	n:20000
GNAT1   20000 perm   4 sec   (5405 perm/sec)   p_kst 8.526500e-01   p_cons 1.029000e-01   p_joint 2.375500e-01

Outputting figure to mutsig2_images.part000000000072/GNAT1.2_1085_20000_0.85265_0.1029_0.23755.png
                gene_name: GNAT1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 85 percent done.
GNAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.825238e-02	ci left: 6.487080e-01	ci right 6.673999e-01	k: 6581	n:10000
Cons ci ratio: 4.874877e-02	ci left: 3.830114e-01	ci right 4.022512e-01	k: 3926	n:10000
KS ci ratio: 3.938760e-03	ci left: 9.879601e-01	ci right 9.919467e-01	k: 9901	n:10000
GNAT3   10000 perm   2 sec   (6051 perm/sec)   p_kst 9.901000e-01   p_cons 3.926000e-01   p_joint 6.581000e-01

Outputting figure to mutsig2_images.part000000000072/GNAT3.2_1097_10000_0.9901_0.3926_0.6581.png
                gene_name: GNAT3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 88 percent done.
GNE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.272236e-02	ci left: 4.472002e-01	ci right 4.668248e-01	k: 4570	n:10000
KS ci ratio: 3.051687e-02	ci left: 6.130147e-01	ci right 6.321138e-01	k: 6226	n:10000
GNE   10000 perm   2 sec   (5444 perm/sec)   p_kst 6.226000e-01   p_cons 4.570000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GNE.2_2310_10000_0.6226_0.457_1.png
                gene_name: GNE
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
GNG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.885105e-02	ci left: 6.391508e-01	ci right 6.579626e-01	k: 6486	n:10000
KS ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
GNG3   10000 perm   1 sec   (7245 perm/sec)   p_kst 4.280000e-02   p_cons 6.486000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 2.048002e-02	ci left: 6.401801e-01	ci right 6.534772e-01	k: 12937	n:20000
KS ci ratio: 1.299748e-01	ci left: 4.066614e-02	ci right 4.636753e-02	k: 869	n:20000
GNG3   20000 perm   3 sec   (6311 perm/sec)   p_kst 4.345000e-02   p_cons 6.468500e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.669222e-02	ci left: 6.422304e-01	ci right 6.530744e-01	k: 19430	n:30000
KS ci ratio: 1.066815e-01	ci left: 4.076467e-02	ci right 4.539102e-02	k: 1291	n:30000
GNG3   30000 perm   5 sec   (5988 perm/sec)   p_kst 4.303333e-02   p_cons 6.476667e-01   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 1.443831e-02	ci left: 6.435222e-01	ci right 6.529063e-01	k: 25929	n:40000
KS ci ratio: 9.314515e-02	ci left: 4.042168e-02	ci right 4.439510e-02	k: 1695	n:40000
GNG3   40000 perm   7 sec   (5757 perm/sec)   p_kst 4.237500e-02   p_cons 6.482250e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GNG3.2_236_40000_0.042375_0.64823_1.png
                gene_name: GNG3
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
GNPAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.499077e-02	ci left: 7.020050e-01	ci right 7.198720e-01	k: 7110	n:10000
KS ci ratio: 6.935644e-02	ci left: 2.336317e-01	ci right 2.505188e-01	k: 2420	n:10000
GNPAT   10000 perm   2 sec   (5569 perm/sec)   p_kst 2.420000e-01   p_cons 7.110000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GNPAT.2_2107_10000_0.242_0.711_1.png
                gene_name: GNPAT
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
GOLPH3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.963012e-01	ci left: 1.465041e-02	ci right 1.983629e-02	k: 171	n:10000
Cons ci ratio: 4.973370e-02	ci left: 3.735570e-01	ci right 3.927111e-01	k: 3831	n:10000
KS ci ratio: 3.017006e-01	ci left: 1.409482e-02	ci right 1.919237e-02	k: 165	n:10000
GOLPH3L   10000 perm   2 sec   (6556 perm/sec)   p_kst 1.650000e-02   p_cons 3.831000e-01   p_joint 1.710000e-02

Joint ci ratio: 1.496921e-01	ci left: 3.066372e-02	ci right 3.567321e-02	k: 662	n:20000
Cons ci ratio: 3.519660e-02	ci left: 3.760062e-01	ci right 3.895279e-01	k: 7655	n:20000
KS ci ratio: 2.136671e-01	ci left: 1.478008e-02	ci right 1.836246e-02	k: 330	n:20000
GOLPH3L   20000 perm   3 sec   (5823 perm/sec)   p_kst 1.650000e-02   p_cons 3.827500e-01   p_joint 3.310000e-02

Joint ci ratio: 1.367304e-01	ci left: 2.484066e-02	ci right 2.851844e-02	k: 799	n:30000
Cons ci ratio: 2.878859e-02	ci left: 3.764304e-01	ci right 3.874591e-01	k: 11458	n:30000
KS ci ratio: 1.724403e-01	ci left: 1.547168e-02	ci right 1.842294e-02	k: 507	n:30000
GOLPH3L   30000 perm   5 sec   (5514 perm/sec)   p_kst 1.690000e-02   p_cons 3.819333e-01   p_joint 2.663333e-02

Joint ci ratio: 1.284586e-01	ci left: 2.128680e-02	ci right 2.423304e-02	k: 909	n:40000
Cons ci ratio: 2.482984e-02	ci left: 3.791051e-01	ci right 3.886617e-01	k: 15355	n:40000
KS ci ratio: 1.458017e-01	ci left: 1.645451e-02	ci right 1.906617e-02	k: 709	n:40000
GOLPH3L   40000 perm   8 sec   (5317 perm/sec)   p_kst 1.772500e-02   p_cons 3.838750e-01   p_joint 2.272500e-02

Joint ci ratio: 1.052377e-01	ci left: 2.557733e-02	ci right 2.843794e-02	k: 1349	n:50000
Cons ci ratio: 2.222162e-02	ci left: 3.793347e-01	ci right 3.878789e-01	k: 19180	n:50000
KS ci ratio: 1.314307e-01	ci left: 1.633003e-02	ci right 1.864648e-02	k: 873	n:50000
GOLPH3L   50000 perm   10 sec   (5152 perm/sec)   p_kst 1.746000e-02   p_cons 3.836000e-01   p_joint 2.698000e-02

Joint ci ratio: 9.634402e-02	ci left: 2.555491e-02	ci right 2.815779e-02	k: 1610	n:60000
Cons ci ratio: 2.033000e-02	ci left: 3.786752e-01	ci right 3.864695e-01	k: 22954	n:60000
KS ci ratio: 1.203185e-01	ci left: 1.633646e-02	ci right 1.844392e-02	k: 1042	n:60000
GOLPH3L   60000 perm   12 sec   (5011 perm/sec)   p_kst 1.736667e-02   p_cons 3.825667e-01   p_joint 2.683333e-02

Joint ci ratio: 7.304703e-02	ci left: 3.806904e-02	ci right 4.096929e-02	k: 2765	n:70000
Cons ci ratio: 1.883492e-02	ci left: 3.786409e-01	ci right 3.858546e-01	k: 26757	n:70000
KS ci ratio: 1.115256e-01	ci left: 1.637479e-02	ci right 1.832266e-02	k: 1213	n:70000
GOLPH3L   70000 perm   14 sec   (4888 perm/sec)   p_kst 1.732857e-02   p_cons 3.822429e-01   p_joint 3.950000e-02

Joint ci ratio: 7.284007e-02	ci left: 3.366345e-02	ci right 3.622042e-02	k: 2794	n:80000
Cons ci ratio: 1.762245e-02	ci left: 3.787685e-01	ci right 3.855151e-01	k: 30571	n:80000
KS ci ratio: 1.046081e-01	ci left: 1.634688e-02	ci right 1.816338e-02	k: 1379	n:80000
GOLPH3L   80000 perm   17 sec   (4771 perm/sec)   p_kst 1.723750e-02   p_cons 3.821375e-01   p_joint 3.492500e-02

Joint ci ratio: 6.445253e-02	ci left: 3.820394e-02	ci right 4.075918e-02	k: 3552	n:90000
Cons ci ratio: 1.657421e-02	ci left: 3.801108e-01	ci right 3.864745e-01	k: 34496	n:90000
KS ci ratio: 9.857711e-02	ci left: 1.641482e-02	ci right 1.812761e-02	k: 1553	n:90000
GOLPH3L   90000 perm   19 sec   (4665 perm/sec)   p_kst 1.725556e-02   p_cons 3.832889e-01   p_joint 3.946667e-02

Outputting figure to mutsig2_images.part000000000072/GOLPH3L.2_874_90000_0.017256_0.38329_0.039467.png
                gene_name: GOLPH3L
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.041 

Current progress: 96 percent done.
GOLT1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.262330e-02	ci left: 9.002141e-01	ci right 9.117481e-01	k: 9061	n:10000
KS ci ratio: 8.329855e-02	ci left: 1.736942e-01	ci right 1.888919e-01	k: 1812	n:10000
GOLT1B   10000 perm   1 sec   (7334 perm/sec)   p_kst 1.812000e-01   p_cons 9.061000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000072/GOLT1B.2_437_10000_0.1812_0.9061_1.png
                gene_name: GOLT1B
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
GP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.277052e-02	ci left: 7.390659e-01	ci right 7.561897e-01	k: 7477	n:10000
Cons ci ratio: 2.310842e-02	ci left: 7.334059e-01	ci right 7.506529e-01	k: 7421	n:10000
KS ci ratio: 4.700555e-02	ci left: 4.004372e-01	ci right 4.198151e-01	k: 4101	n:10000
GP6   10000 perm   2 sec   (4742 perm/sec)   p_kst 4.101000e-01   p_cons 7.421000e-01   p_joint 7.477000e-01

Outputting figure to mutsig2_images.part000000000072/GP6.2_1895_10000_0.4101_0.7421_0.7477.png
                gene_name: GP6
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000072
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 72 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1707>
Subject: Job 9893955: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1707>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000073> was used as the working directory.
Started at Sat Oct  6 00:10:08 2012
Results reported at Sat Oct  6 00:58:47 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000073.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000073.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 73  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000073.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2991.32 sec.
    Max Memory :      3531 MB
    Max Swap   :      5989 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
73
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 73
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 73: processing genes 6492 - 6581
Calculating significance of each gene.
Using projection method.
6492	GPAA1	7.729931e-01
6493	GPAM	9.405200e-01
6494	GPAT2	8.116961e-01
6495	GPATCH1	6.958582e-01
6496	GPATCH2	1.319097e-01
6497	GPATCH3	7.599735e-01
6498	GPATCH4	1
6499	GPATCH8	9.656475e-01
6500	GPBAR1	5.395009e-01
6501	GPBP1	5.860347e-01
6502	GPBP1L1	9.441349e-02
6503	GPC1	9.565789e-01
6504	GPC2	5.821143e-01
6505	GPC3	1.222719e-02
6506	GPC4	3.271895e-01
6507	GPC5	5.021619e-03
6508	GPC6	2.615719e-05
6509	GPCPD1	6.422029e-01
6510	GPD1	7.318821e-01
6511	GPD1L	2.288445e-01
6512	GPD2	4.166487e-01
6513	GPER	6.051890e-01
6514	GPHA2	1
6515	GPHB5	2.632643e-01
6516	GPHN	1.403885e-04
6517	GPI	6.803993e-01
6518	GPIHBP1	1
6519	GPKOW	8.072688e-01
6520	GPLD1	4.707021e-01
6521	GPM6A	1.559260e-01
6522	GPM6B	6.842424e-01
6523	GPN1	8.037741e-01
6524	GPN2	1
6525	GPN3	2.368329e-01
6526	GPNMB	7.863952e-01
6527	GPR1	1.021007e-01
6528	GPR101	6.798305e-02
6529	GPR107	1
6530	GPR108	9.173967e-01
6531	GPR109A	7.554637e-01
6532	GPR109B	1
6533	GPR110	8.038819e-01
6534	GPR111	6.410896e-01
In gene GPR112 the following bins exceed PROBCAP:
    COAD-A6-2678	categ 6	N = 9335    n = 1	mu =   2.07e-07
    READ-AG-3608	categ 6	N = 9335    n = 1	mu =   1.38e-07
6535	GPR112	5.606630e-02
6536	GPR113	1.620833e-01
6537	GPR114	7.989646e-01
6538	GPR115	6.394489e-02
6539	GPR116	3.138757e-01
6540	GPR119	6.544781e-01
6541	GPR12	6.941555e-02
6542	GPR120	1
6543	GPR123	1
6544	GPR124	9.829748e-01
6545	GPR125	4.195897e-01
6546	GPR126	7.835951e-02
6547	GPR128	6.328959e-01
6548	GPR132	7.700819e-01
6549	GPR133	1.388954e-01
6550	GPR135	1
6551	GPR137	1
6552	GPR137B	1
6553	GPR137C	1
6554	GPR139	1.036231e-01
6555	GPR141	1.396358e-01
6556	GPR142	1
6557	GPR143	2.751332e-01
6558	GPR146	1
6559	GPR148	4.409411e-01
6560	GPR149	7.719398e-01
6561	GPR15	8.181398e-01
6562	GPR150	1
6563	GPR151	6.898797e-01
6564	GPR152	8.865049e-01
6565	GPR153	6.205204e-01
6566	GPR155	8.432133e-01
6567	GPR156	2.646958e-01
6568	GPR157	1
6569	GPR158	9.207763e-02
6570	GPR160	4.054415e-01
6571	GPR161	6.440446e-02
6572	GPR162	8.543474e-01
6573	GPR17	7.198423e-01
6574	GPR171	1.689720e-01
6575	GPR172A	1
6576	GPR172B	9.329061e-02
6577	GPR173	5.014062e-01
6578	GPR174	3.516340e-02
6579	GPR176	4.576016e-01
6580	GPR179	9.734998e-01
6581	GPR18	4.021305e-01
Done

Running MutSig 2:
Scatter job 73: processing genes 6492 - 6581
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GPR112
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.571990e-02	ci left: 8.545745e-01	ci right 8.682142e-01	k: 8615	n:10000
Cons ci ratio: 1.388292e-02	ci left: 8.822699e-01	ci right 8.947028e-01	k: 8886	n:10000
KS ci ratio: 2.338610e-02	ci left: 7.287579e-01	ci right 7.461036e-01	k: 7375	n:10000
GPR112   10000 perm   3 sec   (3343 perm/sec)   p_kst 7.375000e-01   p_cons 8.886000e-01   p_joint 8.615000e-01

Outputting figure to mutsig2_images.part000000000073/GPR112.23_9335_10000_0.7375_0.8886_0.8615.png
                gene_name: GPR112
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 2 percent done.
GPR158
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.498200e-01	ci left: 1.023265e-02	ci right 1.465817e-02	k: 123	n:10000
Cons ci ratio: 5.421642e-01	ci left: 3.799572e-03	ci right 6.700171e-03	k: 51	n:10000
KS ci ratio: 2.276270e-01	ci left: 2.551545e-02	ci right 3.216281e-02	k: 287	n:10000
GPR158   10000 perm   2 sec   (4566 perm/sec)   p_kst 2.870000e-02   p_cons 5.100000e-03   p_joint 1.230000e-02

Joint ci ratio: 1.957807e-01	ci left: 1.772392e-02	ci right 2.161749e-02	k: 392	n:20000
Cons ci ratio: 3.744341e-01	ci left: 4.431766e-03	ci right 6.515982e-03	k: 108	n:20000
KS ci ratio: 1.569380e-01	ci left: 2.787170e-02	ci right 3.266616e-02	k: 604	n:20000
GPR158   20000 perm   5 sec   (4171 perm/sec)   p_kst 3.020000e-02   p_cons 5.400000e-03   p_joint 1.960000e-02

Joint ci ratio: 2.086053e-01	ci left: 1.041914e-02	ci right 1.287680e-02	k: 348	n:30000
Cons ci ratio: 3.236258e-01	ci left: 4.080135e-03	ci right 5.684730e-03	k: 145	n:30000
KS ci ratio: 1.269551e-01	ci left: 2.884147e-02	ci right 3.278342e-02	k: 923	n:30000
GPR158   30000 perm   7 sec   (4047 perm/sec)   p_kst 3.076667e-02   p_cons 4.833333e-03   p_joint 1.160000e-02

Joint ci ratio: 2.175693e-01	ci left: 7.174001e-03	ci right 8.948532e-03	k: 321	n:40000
Cons ci ratio: 2.867557e-01	ci left: 3.983757e-03	ci right 5.339698e-03	k: 185	n:40000
KS ci ratio: 1.105968e-01	ci left: 2.876350e-02	ci right 3.215512e-02	k: 1217	n:40000
GPR158   40000 perm   10 sec   (3964 perm/sec)   p_kst 3.042500e-02   p_cons 4.625000e-03   p_joint 8.025000e-03

Joint ci ratio: 1.564503e-01	ci left: 1.142918e-02	ci right 1.338804e-02	k: 619	n:50000
Cons ci ratio: 2.534879e-01	ci left: 4.156869e-03	ci right 5.381718e-03	k: 237	n:50000
KS ci ratio: 9.830665e-02	ci left: 2.930287e-02	ci right 3.235192e-02	k: 1540	n:50000
GPR158   50000 perm   13 sec   (3889 perm/sec)   p_kst 3.080000e-02   p_cons 4.740000e-03   p_joint 1.238000e-02

Joint ci ratio: 1.596335e-01	ci left: 9.155264e-03	ci right 1.075934e-02	k: 596	n:60000
Cons ci ratio: 2.316467e-01	ci left: 4.199876e-03	ci right 5.315526e-03	k: 284	n:60000
KS ci ratio: 8.989704e-02	ci left: 2.933411e-02	ci right 3.211153e-02	k: 1842	n:60000
GPR158   60000 perm   16 sec   (3823 perm/sec)   p_kst 3.070000e-02   p_cons 4.733333e-03   p_joint 9.933333e-03

Joint ci ratio: 1.663379e-01	ci left: 7.216403e-03	ci right 8.539165e-03	k: 550	n:70000
Cons ci ratio: 2.159366e-01	ci left: 4.179774e-03	ci right 5.204805e-03	k: 327	n:70000
KS ci ratio: 8.365433e-02	ci left: 2.914051e-02	ci right 3.169861e-02	k: 2128	n:70000
GPR158   70000 perm   19 sec   (3762 perm/sec)   p_kst 3.040000e-02   p_cons 4.671429e-03   p_joint 7.857143e-03

Joint ci ratio: 1.685907e-01	ci left: 6.146396e-03	ci right 7.289818e-03	k: 536	n:80000
Cons ci ratio: 2.035946e-01	ci left: 4.142890e-03	ci right 5.093584e-03	k: 368	n:80000
KS ci ratio: 7.850383e-02	ci left: 2.903717e-02	ci right 3.142206e-02	k: 2417	n:80000
GPR158   80000 perm   22 sec   (3704 perm/sec)   p_kst 3.021250e-02   p_cons 4.600000e-03   p_joint 6.700000e-03

Joint ci ratio: 1.638137e-01	ci left: 5.804144e-03	ci right 6.850280e-03	k: 568	n:90000
Cons ci ratio: 1.910572e-01	ci left: 4.210713e-03	ci right 5.110561e-03	k: 418	n:90000
KS ci ratio: 7.472891e-02	ci left: 2.855692e-02	ci right 3.078465e-02	k: 2669	n:90000
GPR158   90000 perm   25 sec   (3651 perm/sec)   p_kst 2.965556e-02   p_cons 4.644444e-03   p_joint 6.311111e-03

Joint ci ratio: 1.378632e-01	ci left: 7.466825e-03	ci right 8.581994e-03	k: 801	n:100000
Cons ci ratio: 1.805829e-01	ci left: 4.266408e-03	ci right 5.122710e-03	k: 468	n:100000
KS ci ratio: 7.140002e-02	ci left: 2.821428e-02	ci right 3.031315e-02	k: 2925	n:100000
GPR158   100000 perm   28 sec   (3599 perm/sec)   p_kst 2.925000e-02   p_cons 4.680000e-03   p_joint 8.010000e-03

Joint ci ratio: 1.344127e-01	ci left: 7.156759e-03	ci right 8.196724e-03	k: 843	n:110000
Cons ci ratio: 1.735190e-01	ci left: 4.217380e-03	ci right 5.027261e-03	k: 507	n:110000
KS ci ratio: 6.829178e-02	ci left: 2.808775e-02	ci right 3.008263e-02	k: 3198	n:110000
GPR158   110000 perm   31 sec   (3549 perm/sec)   p_kst 2.907273e-02   p_cons 4.609091e-03   p_joint 7.663636e-03

Joint ci ratio: 1.352654e-01	ci left: 6.479686e-03	ci right 7.427710e-03	k: 833	n:120000
Cons ci ratio: 1.667652e-01	ci left: 4.201028e-03	ci right 4.973214e-03	k: 549	n:120000
KS ci ratio: 6.517141e-02	ci left: 2.831203e-02	ci right 3.022748e-02	k: 3511	n:120000
GPR158   120000 perm   34 sec   (3501 perm/sec)   p_kst 2.925833e-02   p_cons 4.575000e-03   p_joint 6.941667e-03

Joint ci ratio: 1.307260e-01	ci left: 6.419983e-03	ci right 7.325301e-03	k: 892	n:130000
Cons ci ratio: 1.602003e-01	ci left: 4.217248e-03	ci right 4.958963e-03	k: 595	n:130000
KS ci ratio: 6.239260e-02	ci left: 2.854900e-02	ci right 3.039515e-02	k: 3830	n:130000
GPR158   130000 perm   38 sec   (3454 perm/sec)   p_kst 2.946154e-02   p_cons 4.576923e-03   p_joint 6.861538e-03

Joint ci ratio: 1.287424e-01	ci left: 6.154867e-03	ci right 7.008620e-03	k: 920	n:140000
Cons ci ratio: 1.545965e-01	ci left: 4.217925e-03	ci right 4.931405e-03	k: 639	n:140000
KS ci ratio: 6.014325e-02	ci left: 2.856355e-02	ci right 3.034172e-02	k: 4122	n:140000
GPR158   140000 perm   41 sec   (3410 perm/sec)   p_kst 2.944286e-02   p_cons 4.564286e-03   p_joint 6.571429e-03

Joint ci ratio: 1.362668e-01	ci left: 5.112658e-03	ci right 5.866651e-03	k: 822	n:150000
Cons ci ratio: 1.505405e-01	ci left: 4.161146e-03	ci right 4.844891e-03	k: 674	n:150000
KS ci ratio: 5.808698e-02	ci left: 2.861006e-02	ci right 3.032819e-02	k: 4419	n:150000
GPR158   150000 perm   45 sec   (3366 perm/sec)   p_kst 2.946000e-02   p_cons 4.493333e-03   p_joint 5.480000e-03

Joint ci ratio: 1.311806e-01	ci left: 5.185791e-03	ci right 5.919800e-03	k: 887	n:160000
Cons ci ratio: 1.318542e-01	ci left: 5.131383e-03	ci right 5.861712e-03	k: 878	n:160000
KS ci ratio: 5.609961e-02	ci left: 2.878113e-02	ci right 3.044847e-02	k: 4737	n:160000
GPR158   160000 perm   48 sec   (3325 perm/sec)   p_kst 2.960625e-02   p_cons 5.487500e-03   p_joint 5.543750e-03

Joint ci ratio: 1.304658e-01	ci left: 4.937602e-03	ci right 5.632375e-03	k: 897	n:170000
Cons ci ratio: 1.277070e-01	ci left: 5.159642e-03	ci right 5.869146e-03	k: 936	n:170000
KS ci ratio: 5.449788e-02	ci left: 2.872979e-02	ci right 3.034513e-02	k: 5020	n:170000
GPR158   170000 perm   52 sec   (3284 perm/sec)   p_kst 2.952941e-02   p_cons 5.505882e-03   p_joint 5.276471e-03

Joint ci ratio: 1.299048e-01	ci left: 4.706250e-03	ci right 5.365402e-03	k: 905	n:180000
Cons ci ratio: 1.248781e-01	ci left: 5.104328e-03	ci right 5.789526e-03	k: 979	n:180000
KS ci ratio: 5.294885e-02	ci left: 2.876701e-02	ci right 3.033707e-02	k: 5318	n:180000
GPR158   180000 perm   55 sec   (3244 perm/sec)   p_kst 2.954444e-02   p_cons 5.438889e-03   p_joint 5.027778e-03

Joint ci ratio: 1.191641e-01	ci left: 5.325562e-03	ci right 6.005444e-03	k: 1075	n:190000
Cons ci ratio: 1.217514e-01	ci left: 5.095819e-03	ci right 5.761513e-03	k: 1030	n:190000
KS ci ratio: 5.169577e-02	ci left: 2.861381e-02	ci right 3.013744e-02	k: 5580	n:190000
GPR158   190000 perm   59 sec   (3201 perm/sec)   p_kst 2.936842e-02   p_cons 5.421053e-03   p_joint 5.657895e-03

Joint ci ratio: 1.072110e-01	ci left: 6.283864e-03	ci right 7.000548e-03	k: 1327	n:200000
Cons ci ratio: 1.185733e-01	ci left: 5.112615e-03	ci right 5.761846e-03	k: 1086	n:200000
KS ci ratio: 5.041660e-02	ci left: 2.859979e-02	ci right 3.008389e-02	k: 5867	n:200000
GPR158   200000 perm   63 sec   (3162 perm/sec)   p_kst 2.933500e-02   p_cons 5.430000e-03   p_joint 6.635000e-03

Joint ci ratio: 1.128839e-01	ci left: 5.387101e-03	ci right 6.036181e-03	k: 1198	n:210000
Cons ci ratio: 1.154794e-01	ci left: 5.141890e-03	ci right 5.776640e-03	k: 1145	n:210000
KS ci ratio: 4.917034e-02	ci left: 2.865340e-02	ci right 3.010249e-02	k: 6168	n:210000
GPR158   210000 perm   67 sec   (3120 perm/sec)   p_kst 2.937143e-02   p_cons 5.452381e-03   p_joint 5.704762e-03

Joint ci ratio: 1.108265e-01	ci left: 5.341048e-03	ci right 5.972084e-03	k: 1243	n:220000
Cons ci ratio: 1.132315e-01	ci left: 5.111273e-03	ci right 5.729140e-03	k: 1191	n:220000
KS ci ratio: 4.797015e-02	ci left: 2.875196e-02	ci right 3.016956e-02	k: 6480	n:220000
GPR158   220000 perm   71 sec   (3082 perm/sec)   p_kst 2.945455e-02   p_cons 5.413636e-03   p_joint 5.650000e-03

Joint ci ratio: 1.084133e-01	ci left: 5.345632e-03	ci right 5.962578e-03	k: 1299	n:230000
Cons ci ratio: 1.105280e-01	ci left: 5.138391e-03	ci right 5.743740e-03	k: 1250	n:230000
KS ci ratio: 4.683599e-02	ci left: 2.886384e-02	ci right 3.025240e-02	k: 6797	n:230000
GPR158   230000 perm   76 sec   (3044 perm/sec)   p_kst 2.955217e-02   p_cons 5.434783e-03   p_joint 5.647826e-03

Joint ci ratio: 1.074744e-01	ci left: 5.216125e-03	ci right 5.812580e-03	k: 1322	n:240000
Cons ci ratio: 1.079265e-01	ci left: 5.171520e-03	ci right 5.765520e-03	k: 1311	n:240000
KS ci ratio: 4.583178e-02	ci left: 2.890083e-02	ci right 3.026057e-02	k: 7098	n:240000
GPR158   240000 perm   80 sec   (3007 perm/sec)   p_kst 2.957500e-02   p_cons 5.462500e-03   p_joint 5.508333e-03

Joint ci ratio: 1.061633e-01	ci left: 5.135941e-03	ci right 5.715615e-03	k: 1355	n:250000
Cons ci ratio: 1.058888e-01	ci left: 5.163203e-03	ci right 5.744353e-03	k: 1362	n:250000
KS ci ratio: 4.497098e-02	ci left: 2.883228e-02	ci right 3.016266e-02	k: 7373	n:250000
GPR158   250000 perm   84 sec   (2971 perm/sec)   p_kst 2.949200e-02   p_cons 5.448000e-03   p_joint 5.420000e-03

Joint ci ratio: 1.044838e-01	ci left: 5.103173e-03	ci right 5.669477e-03	k: 1399	n:260000
Cons ci ratio: 1.040364e-01	ci left: 5.148130e-03	ci right 5.716827e-03	k: 1411	n:260000
KS ci ratio: 4.412128e-02	ci left: 2.881489e-02	ci right 3.011870e-02	k: 7660	n:260000
GPR158   260000 perm   89 sec   (2936 perm/sec)   p_kst 2.946154e-02   p_cons 5.426923e-03   p_joint 5.380769e-03

Joint ci ratio: 1.025606e-01	ci left: 5.105381e-03	ci right 5.660873e-03	k: 1452	n:270000
Cons ci ratio: 1.019627e-01	ci left: 5.166742e-03	ci right 5.725436e-03	k: 1469	n:270000
KS ci ratio: 4.327033e-02	ci left: 2.886131e-02	ci right 3.014141e-02	k: 7964	n:270000
GPR158   270000 perm   93 sec   (2902 perm/sec)   p_kst 2.949630e-02   p_cons 5.440741e-03   p_joint 5.377778e-03

Joint ci ratio: 1.014193e-01	ci left: 5.037888e-03	ci right 5.579572e-03	k: 1485	n:280000
Cons ci ratio: 1.001400e-01	ci left: 5.170199e-03	ci right 5.718686e-03	k: 1523	n:280000
KS ci ratio: 4.256502e-02	ci left: 2.877386e-02	ci right 3.002876e-02	k: 8231	n:280000
GPR158   280000 perm   98 sec   (2870 perm/sec)   p_kst 2.939643e-02   p_cons 5.439286e-03   p_joint 5.303571e-03

Joint ci ratio: 1.013943e-01	ci left: 4.867507e-03	ci right 5.390734e-03	k: 1486	n:290000
Cons ci ratio: 9.813079e-02	ci left: 5.203775e-03	ci right 5.744111e-03	k: 1586	n:290000
KS ci ratio: 4.184746e-02	ci left: 2.875404e-02	ci right 2.998643e-02	k: 8516	n:290000
GPR158   290000 perm   102 sec   (2834 perm/sec)   p_kst 2.936552e-02   p_cons 5.468966e-03   p_joint 5.124138e-03

Joint ci ratio: 8.596575e-02	ci left: 6.587315e-03	ci right 7.182271e-03	k: 2064	n:300000
Cons ci ratio: 9.650282e-02	ci left: 5.205936e-03	ci right 5.737020e-03	k: 1640	n:300000
KS ci ratio: 4.125685e-02	ci left: 2.861030e-02	ci right 2.981881e-02	k: 8763	n:300000
GPR158   300000 perm   107 sec   (2799 perm/sec)   p_kst 2.921000e-02   p_cons 5.466667e-03   p_joint 6.880000e-03

Outputting figure to mutsig2_images.part000000000073/GPR158.14_3692_300000_0.02921_0.0054667_0.00688.png
                gene_name: GPR158
               theta_stop: 0.097 
                    nperm: 300000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.0055 
      ci_cons_bounds_left: 0.0052 
     ci_cons_bounds_right: 0.0057 
                  p_joint: 0.0069 
     ci_joint_bounds_left: 0.0066 
    ci_joint_bounds_right: 0.0072 

Current progress: 3 percent done.
GPHN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.475385e-02	ci left: 7.059398e-01	ci right 7.237349e-01	k: 7149	n:10000
KS ci ratio: 1.916501e-02	ci left: 7.992275e-01	ci right 8.147933e-01	k: 8071	n:10000
GPHN   10000 perm   2 sec   (4419 perm/sec)   p_kst 8.071000e-01   p_cons 7.149000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPHN.12_2402_10000_0.8071_0.7149_1.png
                gene_name: GPHN
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
GPR116
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.492043e-02	ci left: 8.668259e-01	ci right 8.799557e-01	k: 8735	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
GPR116   10000 perm   2 sec   (4839 perm/sec)   p_kst 1   p_cons 8.735000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR116.11_4121_10000_1_0.8735_1.png
                gene_name: GPR116
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
GPR179
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.840292e-01	ci left: 3.939440e-02	ci right 4.747430e-02	k: 433	n:10000
Cons ci ratio: 5.073728e-02	ci left: 3.642059e-01	ci right 3.832677e-01	k: 3737	n:10000
KS ci ratio: 2.816585e-01	ci left: 1.632191e-02	ci right 2.176339e-02	k: 189	n:10000
GPR179   10000 perm   3 sec   (3947 perm/sec)   p_kst 1.890000e-02   p_cons 3.737000e-01   p_joint 4.330000e-02

Joint ci ratio: 1.215250e-01	ci left: 4.643741e-02	ci right 5.249443e-02	k: 988	n:20000
Cons ci ratio: 3.465167e-02	ci left: 3.833812e-01	ci right 3.969508e-01	k: 7803	n:20000
KS ci ratio: 1.952745e-01	ci left: 1.781911e-02	ci right 2.172227e-02	k: 394	n:20000
GPR179   20000 perm   6 sec   (3628 perm/sec)   p_kst 1.970000e-02   p_cons 3.901500e-01   p_joint 4.940000e-02

Joint ci ratio: 1.090858e-01	ci left: 3.901127e-02	ci right 4.354478e-02	k: 1237	n:30000
Cons ci ratio: 2.837233e-02	ci left: 3.833113e-01	ci right 3.943769e-01	k: 11665	n:30000
KS ci ratio: 1.623308e-01	ci left: 1.751715e-02	ci right 2.064363e-02	k: 571	n:30000
GPR179   30000 perm   9 sec   (3505 perm/sec)   p_kst 1.903333e-02   p_cons 3.888333e-01   p_joint 4.123333e-02

Joint ci ratio: 1.299271e-01	ci left: 2.080263e-02	ci right 2.371730e-02	k: 889	n:40000
Cons ci ratio: 2.444324e-02	ci left: 3.865378e-01	ci right 3.961280e-01	k: 15653	n:40000
KS ci ratio: 1.414044e-01	ci left: 1.751566e-02	ci right 2.020484e-02	k: 753	n:40000
GPR179   40000 perm   12 sec   (3435 perm/sec)   p_kst 1.882500e-02   p_cons 3.913250e-01   p_joint 2.222500e-02

Joint ci ratio: 9.001805e-02	ci left: 3.489277e-02	ci right 3.820132e-02	k: 1826	n:50000
Cons ci ratio: 2.260709e-02	ci left: 3.712528e-01	ci right 3.797617e-01	k: 18775	n:50000
KS ci ratio: 1.244395e-01	ci left: 1.824778e-02	ci right 2.068846e-02	k: 972	n:50000
GPR179   50000 perm   15 sec   (3379 perm/sec)   p_kst 1.944000e-02   p_cons 3.755000e-01   p_joint 3.652000e-02

Joint ci ratio: 1.024181e-01	ci left: 2.261135e-02	ci right 2.506833e-02	k: 1429	n:60000
Cons ci ratio: 2.063530e-02	ci left: 3.716729e-01	ci right 3.794391e-01	k: 22533	n:60000
KS ci ratio: 1.136271e-01	ci left: 1.834374e-02	ci right 2.056975e-02	k: 1166	n:60000
GPR179   60000 perm   18 sec   (3327 perm/sec)   p_kst 1.943333e-02   p_cons 3.755500e-01   p_joint 2.381667e-02

Joint ci ratio: 9.509366e-02	ci left: 2.257183e-02	ci right 2.483931e-02	k: 1658	n:70000
Cons ci ratio: 1.914225e-02	ci left: 3.710410e-01	ci right 3.782265e-01	k: 26224	n:70000
KS ci ratio: 1.044768e-01	ci left: 1.868334e-02	ci right 2.075674e-02	k: 1379	n:70000
GPR179   70000 perm   21 sec   (3281 perm/sec)   p_kst 1.970000e-02   p_cons 3.746286e-01   p_joint 2.368571e-02

Joint ci ratio: 9.032789e-02	ci left: 2.196009e-02	ci right 2.404970e-02	k: 1839	n:80000
Cons ci ratio: 1.793531e-02	ci left: 3.705082e-01	ci right 3.772260e-01	k: 29909	n:80000
KS ci ratio: 9.745041e-02	ci left: 1.885803e-02	ci right 2.080202e-02	k: 1585	n:80000
GPR179   80000 perm   25 sec   (3240 perm/sec)   p_kst 1.981250e-02   p_cons 3.738625e-01   p_joint 2.298750e-02

Outputting figure to mutsig2_images.part000000000073/GPR179.11_7148_80000_0.019813_0.37386_0.022988.png
                gene_name: GPR179
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 8 percent done.
GPC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.603324e-01	ci left: 5.186203e-02	ci right 6.099852e-02	k: 563	n:10000
Cons ci ratio: 2.809059e-01	ci left: 1.641496e-02	ci right 2.187026e-02	k: 190	n:10000
KS ci ratio: 4.284305e-02	ci left: 4.458030e-01	ci right 4.654229e-01	k: 4556	n:10000
GPC6   10000 perm   2 sec   (5706 perm/sec)   p_kst 4.556000e-01   p_cons 1.900000e-02   p_joint 5.630000e-02

Joint ci ratio: 9.988490e-02	ci left: 6.791774e-02	ci right 7.510743e-02	k: 1429	n:20000
Cons ci ratio: 1.999736e-01	ci left: 1.696289e-02	ci right 2.077881e-02	k: 376	n:20000
KS ci ratio: 2.976226e-02	ci left: 4.575186e-01	ci right 4.713917e-01	k: 9289	n:20000
GPC6   20000 perm   4 sec   (5136 perm/sec)   p_kst 4.644500e-01   p_cons 1.880000e-02   p_joint 7.145000e-02

Joint ci ratio: 8.151533e-02	ci left: 6.864201e-02	ci right 7.450795e-02	k: 2146	n:30000
Cons ci ratio: 1.639452e-01	ci left: 1.716520e-02	ci right 2.026233e-02	k: 560	n:30000
KS ci ratio: 2.439528e-02	ci left: 4.568785e-01	ci right 4.681954e-01	k: 13876	n:30000
GPC6   30000 perm   6 sec   (4898 perm/sec)   p_kst 4.625333e-01   p_cons 1.866667e-02   p_joint 7.153333e-02

Joint ci ratio: 6.925741e-02	ci left: 7.157618e-02	ci right 7.673584e-02	k: 2965	n:40000
Cons ci ratio: 1.444611e-01	ci left: 1.676790e-02	ci right 1.940272e-02	k: 722	n:40000
KS ci ratio: 2.107878e-02	ci left: 4.587783e-01	ci right 4.685770e-01	k: 18547	n:40000
GPC6   40000 perm   8 sec   (4757 perm/sec)   p_kst 4.636750e-01   p_cons 1.805000e-02   p_joint 7.412500e-02

Joint ci ratio: 6.484977e-02	ci left: 6.588731e-02	ci right 7.032299e-02	k: 3404	n:50000
Cons ci ratio: 1.297044e-01	ci left: 1.677525e-02	ci right 1.912119e-02	k: 896	n:50000
KS ci ratio: 1.878984e-02	ci left: 4.609800e-01	ci right 4.697440e-01	k: 23268	n:50000
GPC6   50000 perm   11 sec   (4648 perm/sec)   p_kst 4.653600e-01   p_cons 1.792000e-02   p_joint 6.808000e-02

Joint ci ratio: 5.952852e-02	ci left: 6.539010e-02	ci right 6.941853e-02	k: 4043	n:60000
Cons ci ratio: 1.278904e-01	ci left: 1.442987e-02	ci right 1.641740e-02	k: 924	n:60000
KS ci ratio: 1.710667e-02	ci left: 4.627015e-01	ci right 4.707017e-01	k: 28002	n:60000
GPC6   60000 perm   13 sec   (4542 perm/sec)   p_kst 4.667000e-01   p_cons 1.540000e-02   p_joint 6.738333e-02

Joint ci ratio: 5.721536e-02	ci left: 6.104200e-02	ci right 6.465148e-02	k: 4398	n:70000
Cons ci ratio: 1.186365e-01	ci left: 1.444531e-02	ci right 1.628089e-02	k: 1074	n:70000
KS ci ratio: 1.585368e-02	ci left: 4.624988e-01	ci right 4.699040e-01	k: 32634	n:70000
GPC6   70000 perm   16 sec   (4390 perm/sec)   p_kst 4.662000e-01   p_cons 1.534286e-02   p_joint 6.282857e-02

Joint ci ratio: 5.472911e-02	ci left: 5.861084e-02	ci right 6.192113e-02	k: 4820	n:80000
Cons ci ratio: 1.098702e-01	ci left: 1.480128e-02	ci right 1.653411e-02	k: 1252	n:80000
KS ci ratio: 1.479893e-02	ci left: 4.637752e-01	ci right 4.707022e-01	k: 37379	n:80000
GPC6   80000 perm   19 sec   (4309 perm/sec)   p_kst 4.672375e-01   p_cons 1.565000e-02   p_joint 6.025000e-02

Joint ci ratio: 5.467854e-02	ci left: 5.254318e-02	ci right 5.550787e-02	k: 4861	n:90000
Cons ci ratio: 1.041748e-01	ci left: 1.468139e-02	ci right 1.630562e-02	k: 1393	n:90000
KS ci ratio: 1.392161e-02	ci left: 4.650799e-01	ci right 4.716110e-01	k: 42151	n:90000
GPC6   90000 perm   21 sec   (4236 perm/sec)   p_kst 4.683444e-01   p_cons 1.547778e-02   p_joint 5.401111e-02

Joint ci ratio: 5.141259e-02	ci left: 5.352576e-02	ci right 5.636012e-02	k: 5493	n:100000
Cons ci ratio: 9.911823e-02	ci left: 1.463612e-02	ci right 1.617217e-02	k: 1539	n:100000
KS ci ratio: 1.356770e-02	ci left: 4.518700e-01	ci right 4.580526e-01	k: 45496	n:100000
GPC6   100000 perm   24 sec   (4166 perm/sec)   p_kst 4.549600e-01   p_cons 1.539000e-02   p_joint 5.493000e-02

Outputting figure to mutsig2_images.part000000000073/GPC6.10_1704_100000_0.45496_0.01539_0.05493.png
                gene_name: GPC6
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.056 

Current progress: 10 percent done.
GPR126
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.711799e-02	ci left: 6.670292e-01	ci right 6.854680e-01	k: 6763	n:10000
Cons ci ratio: 2.675954e-02	ci left: 6.728712e-01	ci right 6.912227e-01	k: 6821	n:10000
KS ci ratio: 4.140372e-02	ci left: 4.627741e-01	ci right 4.824419e-01	k: 4726	n:10000
GPR126   10000 perm   2 sec   (4871 perm/sec)   p_kst 4.726000e-01   p_cons 6.821000e-01   p_joint 6.763000e-01

Outputting figure to mutsig2_images.part000000000073/GPR126.10_3903_10000_0.4726_0.6821_0.6763.png
                gene_name: GPR126
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 12 percent done.
GPR125
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.069629e-02	ci left: 4.713638e-01	ci right 4.910472e-01	k: 4812	n:10000
Cons ci ratio: 8.710826e-02	ci left: 1.610145e-01	ci right 1.757792e-01	k: 1683	n:10000
KS ci ratio: 2.500293e-02	ci left: 7.018032e-01	ci right 7.196739e-01	k: 7108	n:10000
GPR125   10000 perm   2 sec   (5153 perm/sec)   p_kst 7.108000e-01   p_cons 1.683000e-01   p_joint 4.812000e-01

Outputting figure to mutsig2_images.part000000000073/GPR125.9_4042_10000_0.7108_0.1683_0.4812.png
                gene_name: GPR125
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 13 percent done.
GPR133
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.325932e-02	ci left: 7.308797e-01	ci right 7.481806e-01	k: 7396	n:10000
KS ci ratio: 1.926953e-02	ci left: 7.975022e-01	ci right 8.131196e-01	k: 8054	n:10000
GPR133   10000 perm   2 sec   (5120 perm/sec)   p_kst 8.054000e-01   p_cons 7.396000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR133.8_2725_10000_0.8054_0.7396_1.png
                gene_name: GPR133
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
GPR156
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.937534e-02	ci left: 2.335329e-01	ci right 2.504177e-01	k: 2419	n:10000
Cons ci ratio: 2.615064e-02	ci left: 6.828465e-01	ci right 7.010415e-01	k: 6920	n:10000
KS ci ratio: 1.054030e-01	ci left: 1.150598e-01	ci right 1.279615e-01	k: 1214	n:10000
GPR156   10000 perm   2 sec   (4932 perm/sec)   p_kst 1.214000e-01   p_cons 6.920000e-01   p_joint 2.419000e-01

Joint ci ratio: 5.835213e-02	ci left: 1.787005e-01	ci right 1.894915e-01	k: 3681	n:20000
Cons ci ratio: 1.945467e-02	ci left: 6.633837e-01	ci right 6.764669e-01	k: 13399	n:20000
KS ci ratio: 7.413374e-02	ci left: 1.180846e-01	ci right 1.272254e-01	k: 2452	n:20000
GPR156   20000 perm   4 sec   (4473 perm/sec)   p_kst 1.226000e-01   p_cons 6.699500e-01   p_joint 1.840500e-01

Outputting figure to mutsig2_images.part000000000073/GPR156.8_2481_20000_0.1226_0.66995_0.18405.png
                gene_name: GPR156
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 17 percent done.
GPC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.817083e-02	ci left: 6.500161e-01	ci right 6.686910e-01	k: 6594	n:10000
KS ci ratio: 1.743342e-02	ci left: 8.274759e-01	ci right 8.421285e-01	k: 8349	n:10000
GPC3   10000 perm   2 sec   (5602 perm/sec)   p_kst 8.349000e-01   p_cons 6.594000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPC3.7_1848_10000_0.8349_0.6594_1.png
                gene_name: GPC3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
GPC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.856436e-02	ci left: 4.982503e-01	ci right 5.179450e-01	k: 5081	n:10000
Cons ci ratio: 1.619083e-02	ci left: 8.472320e-01	ci right 8.611609e-01	k: 8543	n:10000
KS ci ratio: 5.771256e-02	ci left: 3.064958e-01	ci right 3.248117e-01	k: 3156	n:10000
GPC5   10000 perm   2 sec   (5239 perm/sec)   p_kst 3.156000e-01   p_cons 8.543000e-01   p_joint 5.081000e-01

Outputting figure to mutsig2_images.part000000000073/GPC5.7_1751_10000_0.3156_0.8543_0.5081.png
                gene_name: GPC5
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 20 percent done.
GPR101
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.252558e-01	ci left: 8.358655e-02	ci right 9.485408e-02	k: 891	n:10000
Cons ci ratio: 1.705025e-01	ci left: 4.590587e-02	ci right 5.455854e-02	k: 501	n:10000
KS ci ratio: 7.114081e-02	ci left: 2.245456e-01	ci right 2.412103e-01	k: 2328	n:10000
GPR101   10000 perm   2 sec   (4017 perm/sec)   p_kst 2.328000e-01   p_cons 5.010000e-02   p_joint 8.910000e-02

Joint ci ratio: 8.222091e-02	ci left: 9.783865e-02	ci right 1.062774e-01	k: 2040	n:20000
Cons ci ratio: 1.209472e-01	ci left: 4.687441e-02	ci right 5.295730e-02	k: 997	n:20000
KS ci ratio: 5.018527e-02	ci left: 2.278491e-01	ci right 2.396284e-01	k: 4674	n:20000
GPR101   20000 perm   6 sec   (3540 perm/sec)   p_kst 2.337000e-01   p_cons 4.985000e-02   p_joint 1.020000e-01

Joint ci ratio: 7.330004e-02	ci left: 8.383423e-02	ci right 9.024601e-02	k: 2610	n:30000
Cons ci ratio: 9.878843e-02	ci left: 4.739802e-02	ci right 5.235628e-02	k: 1495	n:30000
KS ci ratio: 4.082998e-02	ci left: 2.302113e-01	ci right 2.398401e-01	k: 7050	n:30000
GPR101   30000 perm   8 sec   (3633 perm/sec)   p_kst 2.350000e-01   p_cons 4.983333e-02   p_joint 8.700000e-02

Outputting figure to mutsig2_images.part000000000073/GPR101.7_1531_30000_0.235_0.049833_0.087.png
                gene_name: GPR101
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.090 

Current progress: 22 percent done.
GPR161
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.114056e-03	ci left: 9.869754e-01	ci right 9.911324e-01	k: 9892	n:10000
KS ci ratio: 6.236713e-03	ci left: 9.721719e-01	ci right 9.783470e-01	k: 9754	n:10000
GPR161   10000 perm   2 sec   (5054 perm/sec)   p_kst 9.754000e-01   p_cons 9.892000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR161.7_1610_10000_0.9754_0.9892_1.png
                gene_name: GPR161
               theta_stop: 0.0062 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
GPLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.935483e-01	ci left: 3.557635e-02	ci right 4.329490e-02	k: 393	n:10000
Cons ci ratio: 1.172054e-02	ci left: 9.124500e-01	ci right 9.233051e-01	k: 9180	n:10000
KS ci ratio: 2.801592e-01	ci left: 1.650803e-02	ci right 2.197711e-02	k: 191	n:10000
GPLD1   10000 perm   2 sec   (4273 perm/sec)   p_kst 1.910000e-02   p_cons 9.180000e-01   p_joint 3.930000e-02

Joint ci ratio: 1.282129e-01	ci left: 4.178055e-02	ci right 4.755277e-02	k: 892	n:20000
Cons ci ratio: 8.460787e-03	ci left: 9.108453e-01	ci right 9.186337e-01	k: 18296	n:20000
KS ci ratio: 1.965473e-01	ci left: 1.758116e-02	ci right 2.146030e-02	k: 389	n:20000
GPLD1   20000 perm   6 sec   (3238 perm/sec)   p_kst 1.945000e-02   p_cons 9.148000e-01   p_joint 4.460000e-02

Joint ci ratio: 8.947354e-02	ci left: 5.743657e-02	ci right 6.284900e-02	k: 1803	n:30000
Cons ci ratio: 6.932836e-03	ci left: 9.110077e-01	ci right 9.173784e-01	k: 27427	n:30000
KS ci ratio: 1.560504e-01	ci left: 1.899051e-02	ci right 2.223659e-02	k: 617	n:30000
GPLD1   30000 perm   10 sec   (2896 perm/sec)   p_kst 2.056667e-02   p_cons 9.142333e-01   p_joint 6.010000e-02

Joint ci ratio: 9.029144e-02	ci left: 4.296459e-02	ci right 4.705179e-02	k: 1799	n:40000
Cons ci ratio: 6.016572e-03	ci left: 9.111084e-01	ci right 9.166313e-01	k: 36556	n:40000
KS ci ratio: 1.379036e-01	ci left: 1.843305e-02	ci right 2.118728e-02	k: 791	n:40000
GPLD1   40000 perm   13 sec   (3009 perm/sec)   p_kst 1.977500e-02   p_cons 9.139000e-01   p_joint 4.497500e-02

Joint ci ratio: 9.324431e-02	ci left: 3.254588e-02	ci right 3.574850e-02	k: 1706	n:50000
Cons ci ratio: 5.396313e-03	ci left: 9.109615e-01	ci right 9.159104e-01	k: 45673	n:50000
KS ci ratio: 1.248984e-01	ci left: 1.811207e-02	ci right 2.054419e-02	k: 965	n:50000
GPLD1   50000 perm   18 sec   (2799 perm/sec)   p_kst 1.930000e-02   p_cons 9.134600e-01   p_joint 3.412000e-02

Joint ci ratio: 7.114008e-02	ci left: 4.645057e-02	ci right 4.989331e-02	k: 2889	n:60000
Cons ci ratio: 5.047944e-03	ci left: 9.071931e-01	ci right 9.118006e-01	k: 54571	n:60000
KS ci ratio: 1.139262e-01	ci left: 1.824654e-02	ci right 2.046697e-02	k: 1160	n:60000
GPLD1   60000 perm   21 sec   (2850 perm/sec)   p_kst 1.933333e-02   p_cons 9.095167e-01   p_joint 4.815000e-02

Joint ci ratio: 7.102593e-02	ci left: 4.021697e-02	ci right 4.319260e-02	k: 2918	n:70000
Cons ci ratio: 4.652397e-03	ci left: 9.081157e-01	ci right 9.123645e-01	k: 63718	n:70000
KS ci ratio: 1.052181e-01	ci left: 1.841889e-02	ci right 2.047835e-02	k: 1360	n:70000
GPLD1   70000 perm   24 sec   (2961 perm/sec)   p_kst 1.942857e-02   p_cons 9.102571e-01   p_joint 4.168571e-02

Joint ci ratio: 6.491053e-02	ci left: 4.218299e-02	ci right 4.502523e-02	k: 3487	n:80000
Cons ci ratio: 4.370700e-03	ci left: 9.075413e-01	ci right 9.115289e-01	k: 72764	n:80000
KS ci ratio: 9.817919e-02	ci left: 1.857743e-02	ci right 2.050764e-02	k: 1562	n:80000
GPLD1   80000 perm   26 sec   (3045 perm/sec)   p_kst 1.952500e-02   p_cons 9.095500e-01   p_joint 4.358750e-02

Outputting figure to mutsig2_images.part000000000073/GPLD1.6_2664_80000_0.019525_0.90955_0.043588.png
                gene_name: GPLD1
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.045 

Current progress: 25 percent done.
GPATCH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.820846e-02	ci left: 6.494124e-01	ci right 6.680951e-01	k: 6588	n:10000
Cons ci ratio: 5.962295e-02	ci left: 2.927127e-01	ci right 3.108030e-01	k: 3017	n:10000
KS ci ratio: 1.566060e-02	ci left: 8.554928e-01	ci right 8.690954e-01	k: 8624	n:10000
GPATCH2   10000 perm   2 sec   (5438 perm/sec)   p_kst 8.624000e-01   p_cons 3.017000e-01   p_joint 6.588000e-01

Outputting figure to mutsig2_images.part000000000073/GPATCH2.5_1627_10000_0.8624_0.3017_0.6588.png
                gene_name: GPATCH2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 27 percent done.
GPC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.253417e-02	ci left: 9.014466e-01	ci right 9.129149e-01	k: 9073	n:10000
KS ci ratio: 1.507522e-02	ci left: 8.644763e-01	ci right 8.777067e-01	k: 8712	n:10000
GPC4   10000 perm   2 sec   (5701 perm/sec)   p_kst 8.712000e-01   p_cons 9.073000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPC4.5_1707_10000_0.8712_0.9073_1.png
                gene_name: GPC4
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
GPR113
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.651887e-02	ci left: 3.155244e-01	ci right 3.339778e-01	k: 3247	n:10000
Cons ci ratio: 6.039576e-02	ci left: 2.873607e-01	ci right 3.053581e-01	k: 2963	n:10000
KS ci ratio: 6.035235e-02	ci left: 2.876580e-01	ci right 3.056606e-01	k: 2966	n:10000
GPR113   10000 perm   2 sec   (4824 perm/sec)   p_kst 2.966000e-01   p_cons 2.963000e-01   p_joint 3.247000e-01

Outputting figure to mutsig2_images.part000000000073/GPR113.5_3499_10000_0.2966_0.2963_0.3247.png
                gene_name: GPR113
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 30 percent done.
GPR115
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.068593e-02	ci left: 2.268166e-01	ci right 2.435379e-01	k: 2351	n:10000
Cons ci ratio: 1.087943e-01	ci left: 1.086148e-01	ci right 1.212105e-01	k: 1148	n:10000
KS ci ratio: 9.247904e-02	ci left: 1.452116e-01	ci right 1.593916e-01	k: 1522	n:10000
GPR115   10000 perm   2 sec   (5334 perm/sec)   p_kst 1.522000e-01   p_cons 1.148000e-01   p_joint 2.351000e-01

Joint ci ratio: 6.407131e-02	ci left: 1.525753e-01	ci right 1.627245e-01	k: 3152	n:20000
Cons ci ratio: 7.838310e-02	ci left: 1.067765e-01	ci right 1.155369e-01	k: 2222	n:20000
KS ci ratio: 6.630772e-02	ci left: 1.437954e-01	ci right 1.537070e-01	k: 2974	n:20000
GPR115   20000 perm   4 sec   (4795 perm/sec)   p_kst 1.487000e-01   p_cons 1.111000e-01   p_joint 1.576000e-01

Outputting figure to mutsig2_images.part000000000073/GPR115.5_2120_20000_0.1487_0.1111_0.1576.png
                gene_name: GPR115
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 32 percent done.
GPR12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.120912e-02	ci left: 6.023677e-01	ci right 6.215670e-01	k: 6120	n:10000
KS ci ratio: 2.632864e-02	ci left: 6.799240e-01	ci right 6.981658e-01	k: 6891	n:10000
GPR12   10000 perm   2 sec   (6330 perm/sec)   p_kst 6.891000e-01   p_cons 6.120000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR12.5_1009_10000_0.6891_0.612_1.png
                gene_name: GPR12
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
GPR128
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.538158e-02	ci left: 5.411876e-01	ci right 5.607827e-01	k: 5510	n:10000
Cons ci ratio: 5.276977e-02	ci left: 3.461116e-01	ci right 3.649727e-01	k: 3555	n:10000
KS ci ratio: 5.994992e-02	ci left: 2.904329e-01	ci right 3.084840e-01	k: 2994	n:10000
GPR128   10000 perm   2 sec   (5462 perm/sec)   p_kst 2.994000e-01   p_cons 3.555000e-01   p_joint 5.510000e-01

Outputting figure to mutsig2_images.part000000000073/GPR128.5_2458_10000_0.2994_0.3555_0.551.png
                gene_name: GPR128
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 35 percent done.
GPATCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.101469e-02	ci left: 1.819585e-01	ci right 1.974227e-01	k: 1896	n:10000
Cons ci ratio: 1.355230e-01	ci left: 7.194552e-02	ci right 8.250234e-02	k: 771	n:10000
KS ci ratio: 6.180047e-02	ci left: 2.779488e-01	ci right 2.957755e-01	k: 2868	n:10000
GPATCH1   10000 perm   2 sec   (5610 perm/sec)   p_kst 2.868000e-01   p_cons 7.710000e-02   p_joint 1.896000e-01

Joint ci ratio: 6.977457e-02	ci left: 1.315237e-01	ci right 1.410823e-01	k: 2725	n:20000
Cons ci ratio: 9.661324e-02	ci left: 7.236421e-02	ci right 7.975961e-02	k: 1520	n:20000
KS ci ratio: 4.532422e-02	ci left: 2.659903e-01	ci right 2.783760e-01	k: 5443	n:20000
GPATCH1   20000 perm   4 sec   (5052 perm/sec)   p_kst 2.721500e-01   p_cons 7.600000e-02   p_joint 1.362500e-01

Outputting figure to mutsig2_images.part000000000073/GPATCH1.4_2876_20000_0.27215_0.076_0.13625.png
                gene_name: GPATCH1
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 37 percent done.
GPBP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.569007e-02	ci left: 5.368806e-01	ci right 5.564922e-01	k: 5467	n:10000
Cons ci ratio: 6.742779e-02	ci left: 2.440081e-01	ci right 2.611363e-01	k: 2525	n:10000
KS ci ratio: 2.827121e-02	ci left: 6.484061e-01	ci right 6.671019e-01	k: 6578	n:10000
GPBP1L1   10000 perm   2 sec   (6112 perm/sec)   p_kst 6.578000e-01   p_cons 2.525000e-01   p_joint 5.467000e-01

Outputting figure to mutsig2_images.part000000000073/GPBP1L1.4_1465_10000_0.6578_0.2525_0.5467.png
                gene_name: GPBP1L1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 38 percent done.
GPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.471812e-02	ci left: 2.596344e-01	ci right 2.771008e-01	k: 2683	n:10000
Cons ci ratio: 2.956342e-02	ci left: 6.278885e-01	ci right 6.468314e-01	k: 6374	n:10000
KS ci ratio: 7.906570e-02	ci left: 1.894406e-01	ci right 2.051361e-01	k: 1972	n:10000
GPD2   10000 perm   2 sec   (5784 perm/sec)   p_kst 1.972000e-01   p_cons 6.374000e-01   p_joint 2.683000e-01

Outputting figure to mutsig2_images.part000000000073/GPD2.4_2248_10000_0.1972_0.6374_0.2683.png
                gene_name: GPD2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 40 percent done.
GPM6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.092424e-02	ci left: 9.227580e-01	ci right 9.329911e-01	k: 9280	n:10000
KS ci ratio: 5.275781e-03	ci left: 9.795206e-01	ci right 9.847932e-01	k: 9823	n:10000
GPM6A   10000 perm   2 sec   (6299 perm/sec)   p_kst 9.823000e-01   p_cons 9.280000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPM6A.4_873_10000_0.9823_0.928_1.png
                gene_name: GPM6A
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
GPR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.241471e-02	ci left: 9.030904e-01	ci right 9.144701e-01	k: 9089	n:10000
KS ci ratio: 1.904187e-02	ci left: 8.012576e-01	ci right 8.167620e-01	k: 8091	n:10000
GPR1   10000 perm   1 sec   (6814 perm/sec)   p_kst 8.091000e-01   p_cons 9.089000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR1.4_1072_10000_0.8091_0.9089_1.png
                gene_name: GPR1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
GPR139
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.133230e-02	ci left: 1.807775e-01	ci right 1.962044e-01	k: 1884	n:10000
Cons ci ratio: 5.150451e-02	ci left: 3.572448e-01	ci right 3.762329e-01	k: 3667	n:10000
KS ci ratio: 8.928483e-02	ci left: 1.543368e-01	ci right 1.688609e-01	k: 1615	n:10000
GPR139   10000 perm   2 sec   (6416 perm/sec)   p_kst 1.615000e-01   p_cons 3.667000e-01   p_joint 1.884000e-01

Outputting figure to mutsig2_images.part000000000073/GPR139.4_1070_10000_0.1615_0.3667_0.1884.png
                gene_name: GPR139
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 45 percent done.
GPR149
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.237781e-02	ci left: 5.847001e-01	ci right 6.040449e-01	k: 5944	n:10000
Cons ci ratio: 3.268081e-02	ci left: 5.801849e-01	ci right 5.995628e-01	k: 5899	n:10000
KS ci ratio: 5.676458e-02	ci left: 3.136389e-01	ci right 3.320644e-01	k: 3228	n:10000
GPR149   10000 perm   2 sec   (5840 perm/sec)   p_kst 3.228000e-01   p_cons 5.899000e-01   p_joint 5.944000e-01

Outputting figure to mutsig2_images.part000000000073/GPR149.4_2212_10000_0.3228_0.5899_0.5944.png
                gene_name: GPR149
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 47 percent done.
GPR171
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.409920e-02	ci left: 8.790966e-01	ci right 8.916780e-01	k: 8855	n:10000
Cons ci ratio: 2.696332e-02	ci left: 6.695471e-01	ci right 6.879487e-01	k: 6788	n:10000
KS ci ratio: 4.868830e-03	ci left: 9.823135e-01	ci right 9.871982e-01	k: 9849	n:10000
GPR171   10000 perm   2 sec   (6127 perm/sec)   p_kst 9.849000e-01   p_cons 6.788000e-01   p_joint 8.855000e-01

Outputting figure to mutsig2_images.part000000000073/GPR171.4_964_10000_0.9849_0.6788_0.8855.png
                gene_name: GPR171
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 48 percent done.
GPR172B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.971741e-02	ci left: 2.317548e-01	ci right 2.485968e-01	k: 2401	n:10000
Cons ci ratio: 2.085518e-02	ci left: 7.711422e-01	ci right 7.874947e-01	k: 7794	n:10000
KS ci ratio: 1.075815e-01	ci left: 1.108601e-01	ci right 1.235638e-01	k: 1171	n:10000
GPR172B   10000 perm   2 sec   (5805 perm/sec)   p_kst 1.171000e-01   p_cons 7.794000e-01   p_joint 2.401000e-01

Joint ci ratio: 4.656276e-02	ci left: 2.555189e-01	ci right 2.677505e-01	k: 5232	n:20000
Cons ci ratio: 1.498450e-02	ci left: 7.679877e-01	ci right 7.796326e-01	k: 15477	n:20000
KS ci ratio: 7.541845e-02	ci left: 1.144940e-01	ci right 1.235171e-01	k: 2379	n:20000
GPR172B   20000 perm   4 sec   (5250 perm/sec)   p_kst 1.189500e-01   p_cons 7.738500e-01   p_joint 2.616000e-01

Outputting figure to mutsig2_images.part000000000073/GPR172B.4_1363_20000_0.11895_0.77385_0.2616.png
                gene_name: GPR172B
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 50 percent done.
GPAA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.764585e-02	ci left: 3.069917e-01	ci right 3.253155e-01	k: 3161	n:10000
Cons ci ratio: 6.732082e-02	ci left: 2.446012e-01	ci right 2.617428e-01	k: 2531	n:10000
KS ci ratio: 8.000136e-02	ci left: 1.857974e-01	ci right 2.013815e-01	k: 1935	n:10000
GPAA1   10000 perm   2 sec   (6114 perm/sec)   p_kst 1.935000e-01   p_cons 2.531000e-01   p_joint 3.161000e-01

Outputting figure to mutsig2_images.part000000000073/GPAA1.3_1914_10000_0.1935_0.2531_0.3161.png
                gene_name: GPAA1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 52 percent done.
GPAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.793088e-02	ci left: 3.910755e-01	ci right 4.103824e-01	k: 4007	n:10000
Cons ci ratio: 4.765264e-02	ci left: 3.938637e-01	ci right 4.131925e-01	k: 4035	n:10000
KS ci ratio: 6.345683e-02	ci left: 2.673539e-01	ci right 2.849767e-01	k: 2761	n:10000
GPAM   10000 perm   2 sec   (5790 perm/sec)   p_kst 2.761000e-01   p_cons 4.035000e-01   p_joint 4.007000e-01

Outputting figure to mutsig2_images.part000000000073/GPAM.3_2567_10000_0.2761_0.4035_0.4007.png
                gene_name: GPAM
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 53 percent done.
GPATCH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.508261e-02	ci left: 2.574577e-01	ci right 2.748787e-01	k: 2661	n:10000
Cons ci ratio: 1.358092e-01	ci left: 7.165494e-02	ci right 8.219310e-02	k: 768	n:10000
KS ci ratio: 3.349779e-02	ci left: 5.681483e-01	ci right 5.876063e-01	k: 5779	n:10000
GPATCH8   10000 perm   2 sec   (4870 perm/sec)   p_kst 5.779000e-01   p_cons 7.680000e-02   p_joint 2.661000e-01

Joint ci ratio: 4.270642e-02	ci left: 2.900263e-01	ci right 3.027330e-01	k: 5927	n:20000
Cons ci ratio: 9.399636e-02	ci left: 7.622747e-02	ci right 8.379517e-02	k: 1599	n:20000
KS ci ratio: 2.413998e-02	ci left: 5.617515e-01	ci right 5.755285e-01	k: 11373	n:20000
GPATCH8   20000 perm   5 sec   (4404 perm/sec)   p_kst 5.686500e-01   p_cons 7.995000e-02   p_joint 2.963500e-01

Outputting figure to mutsig2_images.part000000000073/GPATCH8.3_4541_20000_0.56865_0.07995_0.29635.png
                gene_name: GPATCH8
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 55 percent done.
GPC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.001686e-01	ci left: 1.261085e-01	ci right 1.395062e-01	k: 1327	n:10000
Cons ci ratio: 6.364781e-02	ci left: 2.661660e-01	ci right 2.837652e-01	k: 2749	n:10000
KS ci ratio: 1.314164e-01	ci left: 7.630693e-02	ci right 8.713821e-02	k: 816	n:10000
GPC2   10000 perm   2 sec   (6069 perm/sec)   p_kst 8.160000e-02   p_cons 2.749000e-01   p_joint 1.327000e-01

Joint ci ratio: 8.098908e-02	ci left: 1.005877e-01	ci right 1.091276e-01	k: 2096	n:20000
Cons ci ratio: 4.491595e-02	ci left: 2.695645e-01	ci right 2.820008e-01	k: 5515	n:20000
KS ci ratio: 9.231348e-02	ci left: 7.886975e-02	ci right 8.655209e-02	k: 1653	n:20000
GPC2   20000 perm   4 sec   (5452 perm/sec)   p_kst 8.265000e-02   p_cons 2.757500e-01   p_joint 1.048000e-01

Outputting figure to mutsig2_images.part000000000073/GPC2.3_1780_20000_0.08265_0.27575_0.1048.png
                gene_name: GPC2
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 57 percent done.
GPCPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.588261e-02	ci left: 1.362914e-01	ci right 1.501172e-01	k: 1431	n:10000
Cons ci ratio: 7.126047e-02	ci left: 2.239532e-01	ci right 2.406030e-01	k: 2322	n:10000
KS ci ratio: 9.416248e-02	ci left: 1.407013e-01	ci right 1.547046e-01	k: 1476	n:10000
GPCPD1   10000 perm   2 sec   (5909 perm/sec)   p_kst 1.476000e-01   p_cons 2.322000e-01   p_joint 1.431000e-01

Outputting figure to mutsig2_images.part000000000073/GPCPD1.3_2095_10000_0.1476_0.2322_0.1431.png
                gene_name: GPCPD1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 58 percent done.
GPD1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.712277e-02	ci left: 8.324623e-01	ci right 8.469393e-01	k: 8398	n:10000
KS ci ratio: 5.584290e-03	ci left: 9.772755e-01	ci right 9.828399e-01	k: 9802	n:10000
GPD1L   10000 perm   1 sec   (6909 perm/sec)   p_kst 9.802000e-01   p_cons 8.398000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPD1L.3_1088_10000_0.9802_0.8398_1.png
                gene_name: GPD1L
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
GPR108
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.026393e-03	ci left: 9.738693e-01	ci right 9.798485e-01	k: 9770	n:10000
Cons ci ratio: 1.248945e-02	ci left: 9.020630e-01	ci right 9.134982e-01	k: 9079	n:10000
KS ci ratio: 4.245653e-02	ci left: 4.502943e-01	ci right 4.699290e-01	k: 4601	n:10000
GPR108   10000 perm   2 sec   (6201 perm/sec)   p_kst 4.601000e-01   p_cons 9.079000e-01   p_joint 9.770000e-01

Outputting figure to mutsig2_images.part000000000073/GPR108.3_1704_10000_0.4601_0.9079_0.977.png
                gene_name: GPR108
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 62 percent done.
GPR141
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.113205e-01	ci left: 7.153353e-03	ci right 1.094096e-02	k: 89	n:10000
Cons ci ratio: 5.238060e-02	ci left: 3.494907e-01	ci right 3.683915e-01	k: 3589	n:10000
KS ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
GPR141   10000 perm   2 sec   (6629 perm/sec)   p_kst 4.000000e-04   p_cons 3.589000e-01   p_joint 8.900000e-03

Joint ci ratio: 5.095746e-01	ci left: 2.202806e-03	ci right 3.747331e-03	k: 58	n:20000
Cons ci ratio: 3.730156e-02	ci left: 3.490617e-01	ci right 3.623803e-01	k: 7114	n:20000
KS ci ratio: 1.306340e+00	ci left: 1.727069e-04	ci right 7.880065e-04	k: 8	n:20000
GPR141   20000 perm   3 sec   (5820 perm/sec)   p_kst 4.000000e-04   p_cons 3.557000e-01   p_joint 2.900000e-03

Joint ci ratio: 2.089083e-01	ci left: 1.038754e-02	ci right 1.284175e-02	k: 347	n:30000
Cons ci ratio: 3.122120e-02	ci left: 3.390548e-01	ci right 3.498420e-01	k: 10333	n:30000
KS ci ratio: 8.762318e-01	ci left: 3.813497e-04	ci right 9.888526e-04	k: 19	n:30000
GPR141   30000 perm   5 sec   (5526 perm/sec)   p_kst 6.333333e-04   p_cons 3.444333e-01   p_joint 1.156667e-02

Joint ci ratio: 4.405932e-01	ci left: 1.541690e-03	ci right 2.433099e-03	k: 78	n:40000
Cons ci ratio: 2.712338e-02	ci left: 3.383719e-01	ci right 3.477009e-01	k: 13721	n:40000
KS ci ratio: 8.990848e-01	ci left: 2.667196e-04	ci right 7.111011e-04	k: 18	n:40000
GPR141   40000 perm   7 sec   (5343 perm/sec)   p_kst 4.500000e-04   p_cons 3.430250e-01   p_joint 1.950000e-03

Joint ci ratio: 2.573180e-01	ci left: 4.025796e-03	ci right 5.232826e-03	k: 230	n:50000
Cons ci ratio: 2.438148e-02	ci left: 3.366249e-01	ci right 3.449536e-01	k: 17039	n:50000
KS ci ratio: 6.530916e-01	ci left: 4.876226e-04	ci right 9.733974e-04	k: 35	n:50000
GPR141   50000 perm   10 sec   (5189 perm/sec)   p_kst 7.000000e-04   p_cons 3.407800e-01   p_joint 4.600000e-03

Joint ci ratio: 2.504394e-01	ci left: 3.557600e-03	ci right 4.591278e-03	k: 243	n:60000
Cons ci ratio: 2.221839e-02	ci left: 3.377715e-01	ci right 3.453772e-01	k: 20494	n:60000
KS ci ratio: 6.046524e-01	ci left: 4.904150e-04	ci right 9.269059e-04	k: 41	n:60000
GPR141   60000 perm   12 sec   (5048 perm/sec)   p_kst 6.833333e-04   p_cons 3.415667e-01   p_joint 4.050000e-03

Joint ci ratio: 2.499992e-01	ci left: 3.062660e-03	ci right 3.950710e-03	k: 244	n:70000
Cons ci ratio: 2.060349e-02	ci left: 3.373310e-01	ci right 3.443679e-01	k: 23859	n:70000
KS ci ratio: 5.907723e-01	ci left: 4.445962e-04	ci right 8.273506e-04	k: 43	n:70000
GPR141   70000 perm   14 sec   (4930 perm/sec)   p_kst 6.142857e-04   p_cons 3.408429e-01   p_joint 3.485714e-03

Joint ci ratio: 2.394979e-01	ci left: 2.937944e-03	ci right 3.748734e-03	k: 266	n:80000
Cons ci ratio: 1.926774e-02	ci left: 3.376772e-01	ci right 3.442593e-01	k: 27277	n:80000
KS ci ratio: 5.598250e-01	ci left: 4.424247e-04	ci right 7.954352e-04	k: 48	n:80000
GPR141   80000 perm   17 sec   (4834 perm/sec)   p_kst 6.000000e-04   p_cons 3.409625e-01   p_joint 3.325000e-03

Joint ci ratio: 2.399938e-01	ci left: 2.601006e-03	ci right 3.320512e-03	k: 265	n:90000
Cons ci ratio: 1.818367e-02	ci left: 3.374259e-01	ci right 3.436289e-01	k: 30647	n:90000
KS ci ratio: 5.058983e-01	ci left: 4.990756e-04	ci right 8.455385e-04	k: 59	n:90000
GPR141   90000 perm   19 sec   (4736 perm/sec)   p_kst 6.555556e-04   p_cons 3.405222e-01   p_joint 2.944444e-03

Joint ci ratio: 2.267398e-01	ci left: 2.642216e-03	ci right 3.327116e-03	k: 297	n:100000
Cons ci ratio: 1.724031e-02	ci left: 3.378520e-01	ci right 3.437373e-01	k: 34079	n:100000
KS ci ratio: 4.650509e-01	ci left: 5.457237e-04	ci right 8.843263e-04	k: 70	n:100000
GPR141   100000 perm   22 sec   (4644 perm/sec)   p_kst 7.000000e-04   p_cons 3.407900e-01   p_joint 2.970000e-03

Joint ci ratio: 1.860796e-01	ci left: 3.644249e-03	ci right 4.400452e-03	k: 441	n:110000
Cons ci ratio: 1.643699e-02	ci left: 3.380168e-01	ci right 3.436279e-01	k: 37490	n:110000
KS ci ratio: 4.301116e-01	ci left: 5.929247e-04	ci right 9.252224e-04	k: 82	n:110000
GPR141   110000 perm   24 sec   (4557 perm/sec)   p_kst 7.454545e-04   p_cons 3.408182e-01   p_joint 4.009091e-03

Joint ci ratio: 1.878247e-01	ci left: 3.276956e-03	ci right 3.964043e-03	k: 433	n:120000
Cons ci ratio: 1.571951e-02	ci left: 3.386420e-01	ci right 3.440157e-01	k: 40959	n:120000
KS ci ratio: 4.041571e-01	ci left: 6.255692e-04	ci right 9.493445e-04	k: 93	n:120000
GPR141   120000 perm   27 sec   (4475 perm/sec)   p_kst 7.750000e-04   p_cons 3.413250e-01   p_joint 3.608333e-03

Joint ci ratio: 2.783690e-01	ci left: 1.311280e-03	ci right 1.742216e-03	k: 197	n:130000
Cons ci ratio: 1.421257e-02	ci left: 3.665220e-01	ci right 3.717761e-01	k: 47989	n:130000
KS ci ratio: 3.918477e-01	ci left: 6.189826e-04	ci right 9.270690e-04	k: 99	n:130000
GPR141   130000 perm   30 sec   (4398 perm/sec)   p_kst 7.615385e-04   p_cons 3.691462e-01   p_joint 1.515385e-03

Joint ci ratio: 2.703018e-01	ci left: 1.297435e-03	ci right 1.709369e-03	k: 209	n:140000
Cons ci ratio: 1.370872e-02	ci left: 3.661720e-01	ci right 3.712335e-01	k: 51618	n:140000
KS ci ratio: 3.999447e-01	ci left: 5.490384e-04	ci right 8.294558e-04	k: 95	n:140000
GPR141   140000 perm   32 sec   (4320 perm/sec)   p_kst 6.785714e-04   p_cons 3.687000e-01   p_joint 1.492857e-03

Joint ci ratio: 1.822912e-01	ci left: 2.793163e-03	ci right 3.359648e-03	k: 460	n:150000
Cons ci ratio: 1.325414e-02	ci left: 3.658982e-01	ci right 3.707869e-01	k: 55251	n:150000
KS ci ratio: 3.861152e-01	ci left: 5.544917e-04	ci right 8.254136e-04	k: 102	n:150000
GPR141   150000 perm   35 sec   (4251 perm/sec)   p_kst 6.800000e-04   p_cons 3.683400e-01   p_joint 3.066667e-03

Joint ci ratio: 1.775440e-01	ci left: 2.767801e-03	ci right 3.312954e-03	k: 485	n:160000
Cons ci ratio: 1.285250e-02	ci left: 3.652805e-01	ci right 3.700118e-01	k: 58823	n:160000
KS ci ratio: 3.824261e-01	ci left: 5.311270e-04	ci right 7.875296e-04	k: 104	n:160000
GPR141   160000 perm   38 sec   (4180 perm/sec)   p_kst 6.500000e-04   p_cons 3.676437e-01   p_joint 3.031250e-03

Joint ci ratio: 1.726417e-01	ci left: 2.762477e-03	ci right 3.289991e-03	k: 513	n:170000
Cons ci ratio: 1.247957e-02	ci left: 3.649490e-01	ci right 3.695379e-01	k: 62431	n:170000
KS ci ratio: 3.736353e-01	ci left: 5.265013e-04	ci right 7.733985e-04	k: 109	n:170000
GPR141   170000 perm   41 sec   (4114 perm/sec)   p_kst 6.411765e-04   p_cons 3.672412e-01   p_joint 3.017647e-03

Joint ci ratio: 1.719864e-01	ci left: 2.630254e-03	ci right 3.130414e-03	k: 517	n:180000
Cons ci ratio: 1.213224e-02	ci left: 3.648504e-01	ci right 3.693094e-01	k: 66074	n:180000
KS ci ratio: 3.702889e-01	ci left: 5.073226e-04	ci right 7.425790e-04	k: 111	n:180000
GPR141   180000 perm   44 sec   (4052 perm/sec)   p_kst 6.166667e-04   p_cons 3.670778e-01   p_joint 2.872222e-03

Joint ci ratio: 1.497244e-01	ci left: 3.325531e-03	ci right 3.868736e-03	k: 682	n:190000
Cons ci ratio: 1.180422e-02	ci left: 3.650845e-01	ci right 3.694248e-01	k: 69778	n:190000
KS ci ratio: 3.592323e-01	ci left: 5.140878e-04	ci right 7.436992e-04	k: 118	n:190000
GPR141   190000 perm   48 sec   (3992 perm/sec)   p_kst 6.210526e-04   p_cons 3.672526e-01   p_joint 3.589474e-03

Joint ci ratio: 1.487577e-01	ci left: 3.202558e-03	ci right 3.721997e-03	k: 691	n:200000
Cons ci ratio: 1.151258e-02	ci left: 3.648471e-01	ci right 3.690767e-01	k: 73392	n:200000
KS ci ratio: 3.477324e-01	ci left: 5.248331e-04	ci right 7.500502e-04	k: 126	n:200000
GPR141   200000 perm   51 sec   (3931 perm/sec)   p_kst 6.300000e-04   p_cons 3.669600e-01   p_joint 3.455000e-03

Joint ci ratio: 1.456359e-01	ci left: 3.187650e-03	ci right 3.692877e-03	k: 721	n:210000
Cons ci ratio: 1.124143e-02	ci left: 3.646384e-01	ci right 3.687653e-01	k: 77007	n:210000
KS ci ratio: 3.385276e-01	ci left: 5.303028e-04	ci right 7.505276e-04	k: 133	n:210000
GPR141   210000 perm   54 sec   (3875 perm/sec)   p_kst 6.333333e-04   p_cons 3.667000e-01   p_joint 3.433333e-03

Joint ci ratio: 1.464637e-01	ci left: 3.007701e-03	ci right 3.487353e-03	k: 713	n:220000
Cons ci ratio: 1.099007e-02	ci left: 3.643861e-01	ci right 3.684174e-01	k: 80608	n:220000
KS ci ratio: 3.288522e-01	ci left: 5.395164e-04	ci right 7.558108e-04	k: 141	n:220000
GPR141   220000 perm   58 sec   (3819 perm/sec)   p_kst 6.409091e-04   p_cons 3.664000e-01   p_joint 3.240909e-03

Joint ci ratio: 1.555911e-01	ci left: 2.538005e-03	ci right 2.970329e-03	k: 632	n:230000
Cons ci ratio: 1.074881e-02	ci left: 3.644174e-01	ci right 3.683599e-01	k: 84269	n:230000
KS ci ratio: 3.199616e-01	ci left: 5.480103e-04	ci right 7.605538e-04	k: 149	n:230000
GPR141   230000 perm   61 sec   (3763 perm/sec)   p_kst 6.478261e-04   p_cons 3.663870e-01   p_joint 2.747826e-03

Joint ci ratio: 1.556001e-01	ci left: 2.432245e-03	ci right 2.846579e-03	k: 632	n:240000
Cons ci ratio: 1.052409e-02	ci left: 3.643887e-01	ci right 3.682479e-01	k: 87916	n:240000
KS ci ratio: 3.078797e-01	ci left: 5.712402e-04	ci right 7.827874e-04	k: 161	n:240000
GPR141   240000 perm   65 sec   (3709 perm/sec)   p_kst 6.708333e-04   p_cons 3.663167e-01   p_joint 2.633333e-03

Joint ci ratio: 1.581328e-01	ci left: 2.258079e-03	ci right 2.649599e-03	k: 612	n:250000
Cons ci ratio: 1.031379e-02	ci left: 3.643231e-01	ci right 3.681040e-01	k: 91553	n:250000
KS ci ratio: 3.032368e-01	ci left: 5.668572e-04	ci right 7.730049e-04	k: 166	n:250000
GPR141   250000 perm   68 sec   (3654 perm/sec)   p_kst 6.640000e-04   p_cons 3.662120e-01   p_joint 2.448000e-03

Joint ci ratio: 1.547605e-01	ci left: 2.271012e-03	ci right 2.655598e-03	k: 639	n:260000
Cons ci ratio: 1.011100e-02	ci left: 3.644746e-01	ci right 3.681823e-01	k: 95245	n:260000
KS ci ratio: 2.979323e-01	ci left: 5.663919e-04	ci right 7.680860e-04	k: 172	n:260000
GPR141   260000 perm   72 sec   (3604 perm/sec)   p_kst 6.615385e-04   p_cons 3.663269e-01   p_joint 2.457692e-03

Joint ci ratio: 1.542850e-01	ci left: 2.201136e-03	ci right 2.572637e-03	k: 643	n:270000
Cons ci ratio: 9.920435e-03	ci left: 3.645822e-01	ci right 3.682207e-01	k: 98928	n:270000
KS ci ratio: 2.912731e-01	ci left: 5.728551e-04	ci right 7.714508e-04	k: 180	n:270000
GPR141   270000 perm   76 sec   (3554 perm/sec)   p_kst 6.666667e-04   p_cons 3.664000e-01   p_joint 2.381481e-03

Joint ci ratio: 1.539327e-01	ci left: 2.132819e-03	ci right 2.491892e-03	k: 646	n:280000
Cons ci ratio: 9.737706e-03	ci left: 3.648040e-01	ci right 3.683773e-01	k: 102645	n:280000
KS ci ratio: 2.850413e-01	ci left: 5.789031e-04	ci right 7.745291e-04	k: 188	n:280000
GPR141   280000 perm   80 sec   (3495 perm/sec)   p_kst 6.714286e-04   p_cons 3.665893e-01   p_joint 2.307143e-03

Joint ci ratio: 1.641734e-01	ci left: 1.800977e-03	ci right 2.126346e-03	k: 568	n:290000
Cons ci ratio: 9.564856e-03	ci left: 3.650043e-01	ci right 3.685156e-01	k: 106360	n:290000
KS ci ratio: 2.828075e-01	ci left: 5.685487e-04	ci right 7.589014e-04	k: 191	n:290000
GPR141   290000 perm   84 sec   (3448 perm/sec)   p_kst 6.586207e-04   p_cons 3.667586e-01   p_joint 1.958621e-03

Joint ci ratio: 1.706076e-01	ci left: 1.606793e-03	ci right 1.909629e-03	k: 526	n:300000
Cons ci ratio: 9.969813e-03	ci left: 3.383747e-01	ci right 3.417684e-01	k: 102021	n:300000
KS ci ratio: 2.784899e-01	ci left: 5.681897e-04	ci right 7.550086e-04	k: 197	n:300000
GPR141   300000 perm   88 sec   (3402 perm/sec)   p_kst 6.566667e-04   p_cons 3.400700e-01   p_joint 1.753333e-03

Joint ci ratio: 1.715937e-01	ci left: 1.536430e-03	ci right 1.827851e-03	k: 520	n:310000
Cons ci ratio: 9.815219e-03	ci left: 3.380585e-01	ci right 3.413961e-01	k: 105315	n:310000
KS ci ratio: 2.743641e-01	ci left: 5.678744e-04	ci right 7.513465e-04	k: 203	n:310000
GPR141   310000 perm   92 sec   (3360 perm/sec)   p_kst 6.548387e-04   p_cons 3.397258e-01   p_joint 1.677419e-03

Joint ci ratio: 1.680803e-01	ci left: 1.554246e-03	ci right 1.842399e-03	k: 542	n:320000
Cons ci ratio: 9.664092e-03	ci left: 3.379247e-01	ci right 3.412094e-01	k: 108661	n:320000
KS ci ratio: 2.704165e-01	ci left: 5.675979e-04	ci right 7.478944e-04	k: 209	n:320000
GPR141   320000 perm   96 sec   (3320 perm/sec)   p_kst 6.531250e-04   p_cons 3.395656e-01   p_joint 1.693750e-03

Joint ci ratio: 1.732760e-01	ci left: 1.414310e-03	ci right 1.685473e-03	k: 510	n:330000
Cons ci ratio: 9.518320e-03	ci left: 3.378661e-01	ci right 3.411004e-01	k: 112029	n:330000
KS ci ratio: 2.660190e-01	ci left: 5.701840e-04	ci right 7.478658e-04	k: 216	n:330000
GPR141   330000 perm   101 sec   (3282 perm/sec)   p_kst 6.545455e-04   p_cons 3.394818e-01   p_joint 1.545455e-03

Joint ci ratio: 1.712775e-01	ci left: 1.406485e-03	ci right 1.672715e-03	k: 522	n:340000
Cons ci ratio: 9.374094e-03	ci left: 3.380433e-01	ci right 3.412300e-01	k: 115476	n:340000
KS ci ratio: 2.612465e-01	ci left: 5.753887e-04	ci right 7.509503e-04	k: 224	n:340000
GPR141   340000 perm   105 sec   (3243 perm/sec)   p_kst 6.588235e-04   p_cons 3.396353e-01   p_joint 1.535294e-03

Joint ci ratio: 1.687161e-01	ci left: 1.410069e-03	ci right 1.672581e-03	k: 538	n:350000
Cons ci ratio: 9.238642e-03	ci left: 3.380938e-01	ci right 3.412346e-01	k: 118882	n:350000
KS ci ratio: 2.550839e-01	ci left: 5.883447e-04	ci right 7.629514e-04	k: 235	n:350000
GPR141   350000 perm   109 sec   (3205 perm/sec)   p_kst 6.714286e-04   p_cons 3.396629e-01   p_joint 1.537143e-03

Joint ci ratio: 1.544514e-01	ci left: 1.648145e-03	ci right 1.926639e-03	k: 642	n:360000
Cons ci ratio: 9.113580e-03	ci left: 3.379114e-01	ci right 3.410078e-01	k: 122205	n:360000
KS ci ratio: 2.493377e-01	ci left: 6.006268e-04	ci right 7.742403e-04	k: 246	n:360000
GPR141   360000 perm   114 sec   (3168 perm/sec)   p_kst 6.833333e-04   p_cons 3.394583e-01   p_joint 1.783333e-03

Joint ci ratio: 1.561675e-01	ci left: 1.567228e-03	ci right 1.835267e-03	k: 628	n:370000
Cons ci ratio: 8.986742e-03	ci left: 3.380740e-01	ci right 3.411285e-01	k: 125652	n:370000
KS ci ratio: 2.449149e-01	ci left: 6.072120e-04	ci right 7.791422e-04	k: 255	n:370000
GPR141   370000 perm   118 sec   (3131 perm/sec)   p_kst 6.891892e-04   p_cons 3.396000e-01   p_joint 1.697297e-03

Joint ci ratio: 1.539796e-01	ci left: 1.571516e-03	ci right 1.836176e-03	k: 646	n:380000
Cons ci ratio: 8.869166e-03	ci left: 3.380206e-01	ci right 3.410345e-01	k: 129020	n:380000
KS ci ratio: 2.411752e-01	ci left: 6.110035e-04	ci right 7.809704e-04	k: 263	n:380000
GPR141   380000 perm   123 sec   (3094 perm/sec)   p_kst 6.921053e-04   p_cons 3.395263e-01   p_joint 1.700000e-03

Joint ci ratio: 1.536267e-01	ci left: 1.538615e-03	ci right 1.797085e-03	k: 649	n:390000
Cons ci ratio: 8.755085e-03	ci left: 3.380214e-01	ci right 3.409964e-01	k: 132408	n:390000
KS ci ratio: 2.380400e-01	ci left: 6.122080e-04	ci right 7.799697e-04	k: 270	n:390000
GPR141   390000 perm   127 sec   (3059 perm/sec)   p_kst 6.923077e-04   p_cons 3.395077e-01   p_joint 1.664103e-03

Joint ci ratio: 1.446556e-01	ci left: 1.699923e-03	ci right 1.967376e-03	k: 732	n:400000
Cons ci ratio: 8.158526e-03	ci left: 3.644495e-01	ci right 3.674375e-01	k: 146377	n:400000
KS ci ratio: 2.371679e-01	ci left: 6.016048e-04	ci right 7.657682e-04	k: 272	n:400000
GPR141   400000 perm   132 sec   (3023 perm/sec)   p_kst 6.800000e-04   p_cons 3.659425e-01   p_joint 1.830000e-03

Joint ci ratio: 1.451556e-01	ci left: 1.646705e-03	ci right 1.906759e-03	k: 727	n:410000
Cons ci ratio: 8.059072e-03	ci left: 3.644302e-01	ci right 3.673814e-01	k: 150021	n:410000
KS ci ratio: 2.350260e-01	ci left: 5.984051e-04	ci right 7.600063e-04	k: 277	n:410000
GPR141   410000 perm   137 sec   (2989 perm/sec)   p_kst 6.756098e-04   p_cons 3.659049e-01   p_joint 1.773171e-03

Joint ci ratio: 1.479326e-01	ci left: 1.545563e-03	ci right 1.794726e-03	k: 700	n:420000
Cons ci ratio: 7.961004e-03	ci left: 3.645382e-01	ci right 3.674542e-01	k: 153718	n:420000
KS ci ratio: 2.313109e-01	ci left: 6.043345e-04	ci right 7.645886e-04	k: 286	n:420000
GPR141   420000 perm   142 sec   (2956 perm/sec)   p_kst 6.809524e-04   p_cons 3.659952e-01   p_joint 1.666667e-03

Joint ci ratio: 1.463751e-01	ci left: 1.543219e-03	ci right 1.789156e-03	k: 715	n:430000
Cons ci ratio: 7.867809e-03	ci left: 3.645600e-01	ci right 3.674419e-01	k: 157380	n:430000
KS ci ratio: 2.297164e-01	ci left: 5.990452e-04	ci right 7.566464e-04	k: 290	n:430000
GPR141   430000 perm   147 sec   (2923 perm/sec)   p_kst 6.744186e-04   p_cons 3.660000e-01   p_joint 1.662791e-03

Joint ci ratio: 1.446677e-01	ci left: 1.545375e-03	ci right 1.788535e-03	k: 732	n:440000
Cons ci ratio: 7.779528e-03	ci left: 3.644788e-01	ci right 3.673275e-01	k: 160997	n:440000
KS ci ratio: 2.262439e-01	ci left: 6.047172e-04	ci right 7.610703e-04	k: 299	n:440000
GPR141   440000 perm   152 sec   (2891 perm/sec)   p_kst 6.795455e-04   p_cons 3.659023e-01   p_joint 1.663636e-03

Joint ci ratio: 1.431143e-01	ci left: 1.545309e-03	ci right 1.785625e-03	k: 748	n:450000
Cons ci ratio: 7.693746e-03	ci left: 3.644258e-01	ci right 3.672426e-01	k: 164625	n:450000
KS ci ratio: 2.232860e-01	ci left: 6.080561e-04	ci right 7.629345e-04	k: 307	n:450000
GPR141   450000 perm   157 sec   (2861 perm/sec)   p_kst 6.822222e-04   p_cons 3.658333e-01   p_joint 1.662222e-03

Joint ci ratio: 1.411486e-01	ci left: 1.555745e-03	ci right 1.794081e-03	k: 769	n:460000
Cons ci ratio: 7.610813e-03	ci left: 3.643709e-01	ci right 3.671568e-01	k: 168251	n:460000
KS ci ratio: 2.200930e-01	ci left: 6.133165e-04	ci right 7.669985e-04	k: 316	n:460000
GPR141   460000 perm   162 sec   (2831 perm/sec)   p_kst 6.869565e-04   p_cons 3.657630e-01   p_joint 1.671739e-03

Joint ci ratio: 1.406943e-01	ci left: 1.532906e-03	ci right 1.766923e-03	k: 774	n:470000
Cons ci ratio: 7.529365e-03	ci left: 3.643888e-01	ci right 3.671448e-01	k: 171910	n:470000
KS ci ratio: 2.180394e-01	ci left: 6.123328e-04	ci right 7.641448e-04	k: 322	n:470000
GPR141   470000 perm   168 sec   (2802 perm/sec)   p_kst 6.851064e-04   p_cons 3.657660e-01   p_joint 1.646809e-03

Joint ci ratio: 1.383042e-01	ci left: 1.555258e-03	ci right 1.788323e-03	k: 801	n:480000
Cons ci ratio: 7.448203e-03	ci left: 3.645475e-01	ci right 3.672749e-01	k: 175637	n:480000
KS ci ratio: 2.137784e-01	ci left: 6.251952e-04	ci right 7.767700e-04	k: 335	n:480000
GPR141   480000 perm   173 sec   (2774 perm/sec)   p_kst 6.979167e-04   p_cons 3.659104e-01   p_joint 1.668750e-03

Joint ci ratio: 1.491266e-01	ci left: 1.303141e-03	ci right 1.515070e-03	k: 689	n:490000
Cons ci ratio: 7.371586e-03	ci left: 3.645756e-01	ci right 3.672750e-01	k: 179303	n:490000
KS ci ratio: 2.112778e-01	ci left: 6.278938e-04	ci right 7.781116e-04	k: 343	n:490000
GPR141   490000 perm   179 sec   (2745 perm/sec)   p_kst 7.000000e-04   p_cons 3.659245e-01   p_joint 1.406122e-03

Joint ci ratio: 1.480582e-01	ci left: 1.296334e-03	ci right 1.505512e-03	k: 699	n:500000
Cons ci ratio: 7.298009e-03	ci left: 3.645567e-01	ci right 3.672289e-01	k: 182946	n:500000
KS ci ratio: 2.100607e-01	ci left: 6.229137e-04	ci right 7.709711e-04	k: 347	n:500000
GPR141   500000 perm   184 sec   (2716 perm/sec)   p_kst 6.940000e-04   p_cons 3.658920e-01   p_joint 1.398000e-03

Joint ci ratio: 1.295457e-01	ci left: 1.676037e-03	ci right 1.910073e-03	k: 913	n:510000
Cons ci ratio: 7.224059e-03	ci left: 3.647012e-01	ci right 3.673473e-01	k: 186672	n:510000
KS ci ratio: 2.079794e-01	ci left: 6.237068e-04	ci right 7.702969e-04	k: 354	n:510000
GPR141   510000 perm   190 sec   (2683 perm/sec)   p_kst 6.941176e-04   p_cons 3.660235e-01   p_joint 1.790196e-03

Joint ci ratio: 1.284267e-01	ci left: 1.673581e-03	ci right 1.905103e-03	k: 929	n:520000
Cons ci ratio: 7.155186e-03	ci left: 3.646540e-01	ci right 3.672744e-01	k: 190301	n:520000
KS ci ratio: 2.056746e-01	ci left: 6.263004e-04	ci right 7.716637e-04	k: 362	n:520000
GPR141   520000 perm   196 sec   (2656 perm/sec)   p_kst 6.961538e-04   p_cons 3.659635e-01   p_joint 1.786538e-03

Joint ci ratio: 1.276068e-01	ci left: 1.663920e-03	ci right 1.892524e-03	k: 941	n:530000
Cons ci ratio: 7.085884e-03	ci left: 3.647633e-01	ci right 3.673590e-01	k: 194012	n:530000
KS ci ratio: 2.039958e-01	ci left: 6.252235e-04	ci right 7.690047e-04	k: 368	n:530000
GPR141   530000 perm   202 sec   (2630 perm/sec)   p_kst 6.943396e-04   p_cons 3.660604e-01   p_joint 1.775472e-03

Joint ci ratio: 1.267359e-01	ci left: 1.656415e-03	ci right 1.882318e-03	k: 954	n:540000
Cons ci ratio: 7.019312e-03	ci left: 3.648186e-01	ci right 3.673902e-01	k: 197696	n:540000
KS ci ratio: 2.037211e-01	ci left: 6.154023e-04	ci right 7.567105e-04	k: 369	n:540000
GPR141   540000 perm   207 sec   (2604 perm/sec)   p_kst 6.833333e-04   p_cons 3.661037e-01   p_joint 1.766667e-03

Joint ci ratio: 1.307051e-01	ci left: 1.525991e-03	ci right 1.741131e-03	k: 897	n:550000
Cons ci ratio: 6.954773e-03	ci left: 3.648594e-01	ci right 3.674075e-01	k: 201373	n:550000
KS ci ratio: 2.026293e-01	ci left: 6.111157e-04	ci right 7.505946e-04	k: 373	n:550000
GPR141   550000 perm   213 sec   (2579 perm/sec)   p_kst 6.781818e-04   p_cons 3.661327e-01   p_joint 1.630909e-03

Joint ci ratio: 1.300559e-01	ci left: 1.514288e-03	ci right 1.726635e-03	k: 906	n:560000
Cons ci ratio: 6.892459e-03	ci left: 3.648666e-01	ci right 3.673919e-01	k: 205032	n:560000
KS ci ratio: 2.012885e-01	ci left: 6.086799e-04	ci right 7.465707e-04	k: 378	n:560000
GPR141   560000 perm   219 sec   (2555 perm/sec)   p_kst 6.750000e-04   p_cons 3.661286e-01   p_joint 1.617857e-03

Joint ci ratio: 1.300578e-01	ci left: 1.487720e-03	ci right 1.696345e-03	k: 906	n:570000
Cons ci ratio: 6.830604e-03	ci left: 3.649544e-01	ci right 3.674575e-01	k: 208737	n:570000
KS ci ratio: 1.989399e-01	ci left: 6.129998e-04	ci right 7.500524e-04	k: 387	n:570000
GPR141   570000 perm   225 sec   (2531 perm/sec)   p_kst 6.789474e-04   p_cons 3.662053e-01   p_joint 1.589474e-03

Joint ci ratio: 1.296308e-01	ci left: 1.472078e-03	ci right 1.677780e-03	k: 912	n:580000
Cons ci ratio: 6.771741e-03	ci left: 3.649462e-01	ci right 3.674276e-01	k: 212388	n:580000
KS ci ratio: 1.976707e-01	ci left: 6.106235e-04	ci right 7.461687e-04	k: 392	n:580000
GPR141   580000 perm   231 sec   (2507 perm/sec)   p_kst 6.758621e-04   p_cons 3.661862e-01   p_joint 1.572414e-03

Joint ci ratio: 1.283713e-01	ci left: 1.476652e-03	ci right 1.680835e-03	k: 930	n:590000
Cons ci ratio: 6.713836e-03	ci left: 3.649756e-01	ci right 3.674359e-01	k: 216061	n:590000
KS ci ratio: 1.956888e-01	ci left: 6.131656e-04	ci right 7.477479e-04	k: 400	n:590000
GPR141   590000 perm   237 sec   (2485 perm/sec)   p_kst 6.779661e-04   p_cons 3.662051e-01   p_joint 1.576271e-03

Joint ci ratio: 1.274170e-01	ci left: 1.474628e-03	ci right 1.676900e-03	k: 944	n:600000
Cons ci ratio: 6.657869e-03	ci left: 3.649708e-01	ci right 3.674105e-01	k: 219714	n:600000
KS ci ratio: 1.944803e-01	ci left: 6.108724e-04	ci right 7.440254e-04	k: 405	n:600000
GPR141   600000 perm   244 sec   (2462 perm/sec)   p_kst 6.750000e-04   p_cons 3.661900e-01   p_joint 1.573333e-03

Joint ci ratio: 1.264838e-01	ci left: 1.472675e-03	ci right 1.673090e-03	k: 958	n:610000
Cons ci ratio: 6.603675e-03	ci left: 3.649384e-01	ci right 3.673579e-01	k: 223350	n:610000
KS ci ratio: 1.928251e-01	ci left: 6.117772e-04	ci right 7.438593e-04	k: 412	n:610000
GPR141   610000 perm   250 sec   (2440 perm/sec)   p_kst 6.754098e-04   p_cons 3.661475e-01   p_joint 1.570492e-03

Joint ci ratio: 1.262877e-01	ci left: 1.453607e-03	ci right 1.651097e-03	k: 961	n:620000
Cons ci ratio: 6.548940e-03	ci left: 3.650377e-01	ci right 3.674377e-01	k: 227067	n:620000
KS ci ratio: 1.916687e-01	ci left: 6.095862e-04	ci right 7.403139e-04	k: 417	n:620000
GPR141   620000 perm   256 sec   (2419 perm/sec)   p_kst 6.725806e-04   p_cons 3.662371e-01   p_joint 1.550000e-03

Joint ci ratio: 1.189040e-01	ci left: 1.619798e-03	ci right 1.826097e-03	k: 1084	n:630000
Cons ci ratio: 6.497565e-03	ci left: 3.649896e-01	ci right 3.673704e-01	k: 230693	n:630000
KS ci ratio: 1.896376e-01	ci left: 6.135142e-04	ci right 7.435294e-04	k: 426	n:630000
GPR141   630000 perm   263 sec   (2396 perm/sec)   p_kst 6.761905e-04   p_cons 3.661794e-01   p_joint 1.720635e-03

Joint ci ratio: 1.179298e-01	ci left: 1.621781e-03	ci right 1.826522e-03	k: 1102	n:640000
Cons ci ratio: 6.445275e-03	ci left: 3.650945e-01	ci right 3.674567e-01	k: 234416	n:640000
KS ci ratio: 1.885373e-01	ci left: 6.113706e-04	ci right 7.400938e-04	k: 431	n:640000
GPR141   640000 perm   270 sec   (2375 perm/sec)   p_kst 6.734375e-04   p_cons 3.662750e-01   p_joint 1.721875e-03

Joint ci ratio: 1.178778e-01	ci left: 1.598322e-03	ci right 1.800007e-03	k: 1103	n:650000
Cons ci ratio: 6.394609e-03	ci left: 3.651685e-01	ci right 3.675126e-01	k: 238121	n:650000
KS ci ratio: 1.872416e-01	ci left: 6.107615e-04	ci right 7.383722e-04	k: 437	n:650000
GPR141   650000 perm   276 sec   (2355 perm/sec)   p_kst 6.723077e-04   p_cons 3.663400e-01   p_joint 1.696923e-03

Joint ci ratio: 1.182015e-01	ci left: 1.565281e-03	ci right 1.763376e-03	k: 1097	n:660000
Cons ci ratio: 6.344994e-03	ci left: 3.652495e-01	ci right 3.675759e-01	k: 241832	n:660000
KS ci ratio: 1.853467e-01	ci left: 6.145081e-04	ci right 7.414562e-04	k: 446	n:660000
GPR141   660000 perm   283 sec   (2335 perm/sec)   p_kst 6.757576e-04   p_cons 3.664121e-01   p_joint 1.662121e-03

Joint ci ratio: 1.179343e-01	ci left: 1.549160e-03	ci right 1.744741e-03	k: 1102	n:670000
Cons ci ratio: 6.297651e-03	ci left: 3.652446e-01	ci right 3.675535e-01	k: 245487	n:670000
KS ci ratio: 1.841153e-01	ci left: 6.138774e-04	ci right 7.397586e-04	k: 452	n:670000
GPR141   670000 perm   290 sec   (2314 perm/sec)   p_kst 6.746269e-04   p_cons 3.663985e-01   p_joint 1.644776e-03

Joint ci ratio: 1.164643e-01	ci left: 1.566349e-03	ci right 1.761465e-03	k: 1130	n:680000
Cons ci ratio: 6.251153e-03	ci left: 3.652546e-01	ci right 3.675465e-01	k: 249152	n:680000
KS ci ratio: 1.833081e-01	ci left: 6.104616e-04	ci right 7.350325e-04	k: 456	n:680000
GPR141   680000 perm   297 sec   (2292 perm/sec)   p_kst 6.705882e-04   p_cons 3.664000e-01   p_joint 1.661765e-03

Joint ci ratio: 1.122221e-01	ci left: 1.666135e-03	ci right 1.865622e-03	k: 1217	n:690000
Cons ci ratio: 6.206058e-03	ci left: 3.652355e-01	ci right 3.675106e-01	k: 252797	n:690000
KS ci ratio: 1.809471e-01	ci left: 6.182130e-04	ci right 7.425629e-04	k: 468	n:690000
GPR141   690000 perm   304 sec   (2273 perm/sec)   p_kst 6.782609e-04   p_cons 3.663725e-01   p_joint 1.763768e-03

Joint ci ratio: 1.122697e-01	ci left: 1.640943e-03	ci right 1.837503e-03	k: 1216	n:700000
Cons ci ratio: 6.160977e-03	ci left: 3.652883e-01	ci right 3.675471e-01	k: 256492	n:700000
KS ci ratio: 1.801808e-01	ci left: 6.148373e-04	ci right 7.379272e-04	k: 472	n:700000
GPR141   700000 perm   311 sec   (2253 perm/sec)   p_kst 6.742857e-04   p_cons 3.664171e-01   p_joint 1.737143e-03

Joint ci ratio: 1.119490e-01	ci left: 1.627413e-03	ci right 1.821759e-03	k: 1223	n:710000
Cons ci ratio: 6.117272e-03	ci left: 3.653087e-01	ci right 3.675516e-01	k: 260165	n:710000
KS ci ratio: 1.786759e-01	ci left: 6.169392e-04	ci right 7.393069e-04	k: 480	n:710000
GPR141   710000 perm   318 sec   (2235 perm/sec)   p_kst 6.760563e-04   p_cons 3.664296e-01   p_joint 1.722535e-03

Joint ci ratio: 1.111796e-01	ci left: 1.627763e-03	ci right 1.820726e-03	k: 1240	n:720000
Cons ci ratio: 6.075193e-03	ci left: 3.652744e-01	ci right 3.675017e-01	k: 263799	n:720000
KS ci ratio: 1.763085e-01	ci left: 6.256243e-04	ci right 7.478953e-04	k: 493	n:720000
GPR141   720000 perm   325 sec   (2217 perm/sec)   p_kst 6.847222e-04   p_cons 3.663875e-01   p_joint 1.722222e-03

Joint ci ratio: 9.857400e-02	ci left: 2.055064e-03	ci right 2.269466e-03	k: 1577	n:730000
Cons ci ratio: 6.033241e-03	ci left: 3.652973e-01	ci right 3.675092e-01	k: 267474	n:730000
KS ci ratio: 1.742047e-01	ci left: 6.327716e-04	ci right 7.548086e-04	k: 505	n:730000
GPR141   730000 perm   332 sec   (2199 perm/sec)   p_kst 6.917808e-04   p_cons 3.664027e-01   p_joint 2.160274e-03

Joint ci ratio: 9.845047e-02	ci left: 2.032564e-03	ci right 2.244337e-03	k: 1581	n:740000
Cons ci ratio: 5.991065e-03	ci left: 3.654034e-01	ci right 3.676004e-01	k: 271211	n:740000
KS ci ratio: 1.730121e-01	ci left: 6.332691e-04	ci right 7.544786e-04	k: 512	n:740000
GPR141   740000 perm   339 sec   (2181 perm/sec)   p_kst 6.918919e-04   p_cons 3.665014e-01   p_joint 2.136486e-03

Joint ci ratio: 8.911434e-02	ci left: 2.458630e-03	ci right 2.689239e-03	k: 1929	n:750000
Cons ci ratio: 5.951316e-03	ci left: 3.653854e-01	ci right 3.675677e-01	k: 274857	n:750000
KS ci ratio: 1.706978e-01	ci left: 6.426896e-04	ci right 7.638873e-04	k: 526	n:750000
GPR141   750000 perm   347 sec   (2164 perm/sec)   p_kst 7.013333e-04   p_cons 3.664760e-01   p_joint 2.572000e-03

Joint ci ratio: 8.058362e-02	ci left: 2.978836e-03	ci right 3.230238e-03	k: 2358	n:760000
Cons ci ratio: 5.912599e-03	ci left: 3.653482e-01	ci right 3.675160e-01	k: 278488	n:760000
KS ci ratio: 1.697344e-01	ci left: 6.417915e-04	ci right 7.620669e-04	k: 532	n:760000
GPR141   760000 perm   354 sec   (2146 perm/sec)   p_kst 7.000000e-04   p_cons 3.664316e-01   p_joint 3.102632e-03

Joint ci ratio: 7.995868e-02	ci left: 2.987238e-03	ci right 3.237303e-03	k: 2395	n:770000
Cons ci ratio: 5.873625e-03	ci left: 3.653912e-01	ci right 3.675449e-01	k: 282180	n:770000
KS ci ratio: 1.689440e-01	ci left: 6.396748e-04	ci right 7.589385e-04	k: 537	n:770000
GPR141   770000 perm   361 sec   (2130 perm/sec)   p_kst 6.974026e-04   p_cons 3.664675e-01   p_joint 3.110390e-03

Joint ci ratio: 8.053549e-02	ci left: 2.906220e-03	ci right 3.151340e-03	k: 2361	n:780000
Cons ci ratio: 5.835879e-03	ci left: 3.653959e-01	ci right 3.675358e-01	k: 285843	n:780000
KS ci ratio: 1.675482e-01	ci left: 6.425265e-04	ci right 7.612323e-04	k: 546	n:780000
GPR141   780000 perm   369 sec   (2114 perm/sec)   p_kst 7.000000e-04   p_cons 3.664654e-01   p_joint 3.026923e-03

Joint ci ratio: 7.468937e-02	ci left: 3.344873e-03	ci right 3.605624e-03	k: 2744	n:790000
Cons ci ratio: 5.799548e-03	ci left: 3.653450e-01	ci right 3.674712e-01	k: 289462	n:790000
KS ci ratio: 1.657396e-01	ci left: 6.489499e-04	ci right 7.674190e-04	k: 558	n:790000
GPR141   790000 perm   377 sec   (2098 perm/sec)   p_kst 7.063291e-04   p_cons 3.664076e-01   p_joint 3.473418e-03

Joint ci ratio: 7.625385e-02	ci left: 3.166919e-03	ci right 3.419198e-03	k: 2633	n:800000
Cons ci ratio: 5.763747e-03	ci left: 3.653066e-01	ci right 3.674194e-01	k: 293090	n:800000
KS ci ratio: 1.645661e-01	ci left: 6.504247e-04	ci right 7.682392e-04	k: 566	n:800000
GPR141   800000 perm   384 sec   (2081 perm/sec)   p_kst 7.075000e-04   p_cons 3.663625e-01   p_joint 3.291250e-03

Joint ci ratio: 7.590923e-02	ci left: 3.156887e-03	ci right 3.407180e-03	k: 2657	n:810000
Cons ci ratio: 5.728174e-03	ci left: 3.653037e-01	ci right 3.674034e-01	k: 296746	n:810000
KS ci ratio: 1.641328e-01	ci left: 6.459460e-04	ci right 7.626108e-04	k: 569	n:810000
GPR141   810000 perm   392 sec   (2065 perm/sec)   p_kst 7.024691e-04   p_cons 3.663531e-01   p_joint 3.280247e-03

Joint ci ratio: 7.538615e-02	ci left: 3.162657e-03	ci right 3.411604e-03	k: 2694	n:820000
Cons ci ratio: 5.693072e-03	ci left: 3.653156e-01	ci right 3.674025e-01	k: 300414	n:820000
KS ci ratio: 1.632759e-01	ci left: 6.450859e-04	ci right 7.609273e-04	k: 575	n:820000
GPR141   820000 perm   400 sec   (2048 perm/sec)   p_kst 7.012195e-04   p_cons 3.663585e-01   p_joint 3.285366e-03

Joint ci ratio: 7.537362e-02	ci left: 3.125733e-03	ci right 3.371730e-03	k: 2695	n:830000
Cons ci ratio: 5.658960e-03	ci left: 3.652983e-01	ci right 3.673725e-01	k: 304058	n:830000
KS ci ratio: 1.622927e-01	ci left: 6.454040e-04	ci right 7.605365e-04	k: 582	n:830000
GPR141   830000 perm   408 sec   (2033 perm/sec)   p_kst 7.012048e-04   p_cons 3.663349e-01   p_joint 3.246988e-03

Joint ci ratio: 7.499925e-02	ci left: 3.120060e-03	ci right 3.364338e-03	k: 2722	n:840000
Cons ci ratio: 5.626003e-03	ci left: 3.652362e-01	ci right 3.672980e-01	k: 307664	n:840000
KS ci ratio: 1.613271e-01	ci left: 6.457165e-04	ci right 7.601530e-04	k: 589	n:840000
GPR141   840000 perm   416 sec   (2017 perm/sec)   p_kst 7.011905e-04   p_cons 3.662667e-01   p_joint 3.240476e-03

Joint ci ratio: 7.551714e-02	ci left: 3.040638e-03	ci right 3.280414e-03	k: 2685	n:850000
Cons ci ratio: 5.593727e-03	ci left: 3.651663e-01	ci right 3.672158e-01	k: 311262	n:850000
KS ci ratio: 1.605131e-01	ci left: 6.448944e-04	ci right 7.585529e-04	k: 595	n:850000
GPR141   850000 perm   425 sec   (2002 perm/sec)   p_kst 7.000000e-04   p_cons 3.661906e-01   p_joint 3.158824e-03

Joint ci ratio: 7.511286e-02	ci left: 3.038368e-03	ci right 3.276626e-03	k: 2714	n:860000
Cons ci ratio: 5.561374e-03	ci left: 3.651503e-01	ci right 3.671878e-01	k: 314905	n:860000
KS ci ratio: 1.597113e-01	ci left: 6.440928e-04	ci right 7.569886e-04	k: 601	n:860000
GPR141   860000 perm   433 sec   (1986 perm/sec)   p_kst 6.988372e-04   p_cons 3.661686e-01   p_joint 3.155814e-03

Joint ci ratio: 7.485195e-02	ci left: 3.024873e-03	ci right 3.261213e-03	k: 2733	n:870000
Cons ci ratio: 5.528303e-03	ci left: 3.652415e-01	ci right 3.672674e-01	k: 318641	n:870000
KS ci ratio: 1.593151e-01	ci left: 6.399999e-04	ci right 7.518735e-04	k: 604	n:870000
GPR141   870000 perm   441 sec   (1971 perm/sec)   p_kst 6.942529e-04   p_cons 3.662540e-01   p_joint 3.141379e-03

Joint ci ratio: 7.444468e-02	ci left: 3.023954e-03	ci right 3.258881e-03	k: 2763	n:880000
Cons ci ratio: 5.496783e-03	ci left: 3.652490e-01	ci right 3.672633e-01	k: 322305	n:880000
KS ci ratio: 1.585311e-01	ci left: 6.392742e-04	ci right 7.504186e-04	k: 610	n:880000
GPR141   880000 perm   450 sec   (1957 perm/sec)   p_kst 6.931818e-04   p_cons 3.662557e-01   p_joint 3.139773e-03

Joint ci ratio: 7.586323e-02	ci left: 2.877515e-03	ci right 3.105514e-03	k: 2661	n:890000
Cons ci ratio: 5.465809e-03	ci left: 3.652551e-01	ci right 3.672581e-01	k: 325968	n:890000
KS ci ratio: 1.580149e-01	ci left: 6.364077e-04	ci right 7.466593e-04	k: 614	n:890000
GPR141   890000 perm   458 sec   (1943 perm/sec)   p_kst 6.898876e-04   p_cons 3.662562e-01   p_joint 2.989888e-03

Joint ci ratio: 7.556613e-02	ci left: 2.868434e-03	ci right 3.094784e-03	k: 2682	n:900000
Cons ci ratio: 5.435847e-03	ci left: 3.652190e-01	ci right 3.672108e-01	k: 329593	n:900000
KS ci ratio: 1.573767e-01	ci left: 6.346727e-04	ci right 7.441377e-04	k: 619	n:900000
GPR141   900000 perm   467 sec   (1928 perm/sec)   p_kst 6.877778e-04   p_cons 3.662144e-01   p_joint 2.980000e-03

Joint ci ratio: 7.631268e-02	ci left: 2.780850e-03	ci right 3.002553e-03	k: 2630	n:910000
Cons ci ratio: 5.406885e-03	ci left: 3.651398e-01	ci right 3.671204e-01	k: 333178	n:910000
KS ci ratio: 1.566207e-01	ci left: 6.340327e-04	ci right 7.428127e-04	k: 625	n:910000
GPR141   910000 perm   475 sec   (1915 perm/sec)   p_kst 6.868132e-04   p_cons 3.661297e-01   p_joint 2.890110e-03

Joint ci ratio: 7.675397e-02	ci left: 2.718636e-03	ci right 2.936687e-03	k: 2600	n:920000
Cons ci ratio: 5.377574e-03	ci left: 3.651318e-01	ci right 3.671017e-01	k: 336827	n:920000
KS ci ratio: 1.562471e-01	ci left: 6.302741e-04	ci right 7.381271e-04	k: 628	n:920000
GPR141   920000 perm   484 sec   (1901 perm/sec)   p_kst 6.826087e-04   p_cons 3.661163e-01   p_joint 2.826087e-03

Joint ci ratio: 7.693332e-02	ci left: 2.676746e-03	ci right 2.891961e-03	k: 2588	n:930000
Cons ci ratio: 5.349305e-03	ci left: 3.650746e-01	ci right 3.670338e-01	k: 340430	n:930000
KS ci ratio: 1.555073e-01	ci left: 6.296970e-04	ci right 7.368934e-04	k: 634	n:930000
GPR141   930000 perm   493 sec   (1887 perm/sec)   p_kst 6.817204e-04   p_cons 3.660538e-01   p_joint 2.782796e-03

Joint ci ratio: 7.656466e-02	ci left: 2.674355e-03	ci right 2.888302e-03	k: 2613	n:940000
Cons ci ratio: 5.320502e-03	ci left: 3.651037e-01	ci right 3.670524e-01	k: 344113	n:940000
KS ci ratio: 1.552633e-01	ci left: 6.250429e-04	ci right 7.312646e-04	k: 636	n:940000
GPR141   940000 perm   502 sec   (1873 perm/sec)   p_kst 6.765957e-04   p_cons 3.660777e-01   p_joint 2.779787e-03

Joint ci ratio: 7.615785e-02	ci left: 2.675115e-03	ci right 2.887935e-03	k: 2641	n:950000
Cons ci ratio: 5.291870e-03	ci left: 3.651575e-01	ci right 3.670960e-01	k: 347820	n:950000
KS ci ratio: 1.545373e-01	ci left: 6.245344e-04	ci right 7.301275e-04	k: 642	n:950000
GPR141   950000 perm   511 sec   (1858 perm/sec)   p_kst 6.757895e-04   p_cons 3.661263e-01   p_joint 2.780000e-03

Joint ci ratio: 7.595742e-02	ci left: 2.661554e-03	ci right 2.872714e-03	k: 2655	n:960000
Cons ci ratio: 5.264358e-03	ci left: 3.651518e-01	ci right 3.670802e-01	k: 351471	n:960000
KS ci ratio: 1.540591e-01	ci left: 6.220346e-04	ci right 7.268495e-04	k: 646	n:960000
GPR141   960000 perm   520 sec   (1846 perm/sec)   p_kst 6.729167e-04   p_cons 3.661156e-01   p_joint 2.765625e-03

Joint ci ratio: 7.455030e-02	ci left: 2.736284e-03	ci right 2.949177e-03	k: 2756	n:970000
Cons ci ratio: 5.237968e-03	ci left: 3.650845e-01	ci right 3.670029e-01	k: 355062	n:970000
KS ci ratio: 1.528819e-01	ci left: 6.255353e-04	ci right 7.300609e-04	k: 656	n:970000
GPR141   970000 perm   529 sec   (1835 perm/sec)   p_kst 6.762887e-04   p_cons 3.660433e-01   p_joint 2.841237e-03

Joint ci ratio: 7.425487e-02	ci left: 2.730393e-03	ci right 2.941950e-03	k: 2778	n:980000
Cons ci ratio: 5.210917e-03	ci left: 3.651125e-01	ci right 3.670210e-01	k: 358745	n:980000
KS ci ratio: 1.525343e-01	ci left: 6.220965e-04	ci right 7.257896e-04	k: 659	n:980000
GPR141   980000 perm   538 sec   (1823 perm/sec)   p_kst 6.724490e-04   p_cons 3.660663e-01   p_joint 2.834694e-03

Joint ci ratio: 7.369952e-02	ci left: 2.744454e-03	ci right 2.955441e-03	k: 2820	n:990000
Cons ci ratio: 5.184009e-03	ci left: 3.651641e-01	ci right 3.670630e-01	k: 362452	n:990000
KS ci ratio: 1.513915e-01	ci left: 6.255297e-04	ci right 7.289430e-04	k: 669	n:990000
GPR141   990000 perm   547 sec   (1810 perm/sec)   p_kst 6.757576e-04   p_cons 3.661131e-01   p_joint 2.848485e-03

Joint ci ratio: 7.338817e-02	ci left: 2.740568e-03	ci right 2.950328e-03	k: 2844	n:1000000
Cons ci ratio: 5.157826e-03	ci left: 3.651867e-01	ci right 3.670761e-01	k: 366131	n:1000000
KS ci ratio: 1.506068e-01	ci left: 6.260099e-04	ci right 7.289179e-04	k: 676	n:1000000
GPR141   1000000 perm   556 sec   (1798 perm/sec)   p_kst 6.760000e-04   p_cons 3.661310e-01   p_joint 2.844000e-03

Joint ci ratio: 7.366234e-02	ci left: 2.693021e-03	ci right 2.899946e-03	k: 2823	n:1010000
Cons ci ratio: 5.132626e-03	ci left: 3.651554e-01	ci right 3.670354e-01	k: 369756	n:1010000
KS ci ratio: 1.498341e-01	ci left: 6.264820e-04	ci right 7.288919e-04	k: 683	n:1010000
GPR141   1010000 perm   565 sec   (1786 perm/sec)   p_kst 6.762376e-04   p_cons 3.660950e-01   p_joint 2.795050e-03

Joint ci ratio: 7.443379e-02	ci left: 2.610805e-03	ci right 2.813604e-03	k: 2765	n:1020000
Cons ci ratio: 5.107576e-03	ci left: 3.651444e-01	ci right 3.670152e-01	k: 373401	n:1020000
KS ci ratio: 1.496159e-01	ci left: 6.222273e-04	ci right 7.237802e-04	k: 685	n:1020000
GPR141   1020000 perm   575 sec   (1775 perm/sec)   p_kst 6.715686e-04   p_cons 3.660794e-01   p_joint 2.710784e-03

Joint ci ratio: 7.499414e-02	ci left: 2.546392e-03	ci right 2.745741e-03	k: 2724	n:1030000
Cons ci ratio: 5.083251e-03	ci left: 3.651007e-01	ci right 3.669622e-01	k: 377012	n:1030000
KS ci ratio: 1.489659e-01	ci left: 6.217939e-04	ci right 7.227959e-04	k: 691	n:1030000
GPR141   1030000 perm   584 sec   (1763 perm/sec)   p_kst 6.708738e-04   p_cons 3.660311e-01   p_joint 2.644660e-03

Joint ci ratio: 7.474798e-02	ci left: 2.538891e-03	ci right 2.736972e-03	k: 2742	n:1040000
Cons ci ratio: 5.058820e-03	ci left: 3.650991e-01	ci right 3.669517e-01	k: 380666	n:1040000
KS ci ratio: 1.484308e-01	ci left: 6.204439e-04	ci right 7.208324e-04	k: 696	n:1040000
GPR141   1040000 perm   594 sec   (1752 perm/sec)   p_kst 6.692308e-04   p_cons 3.660250e-01   p_joint 2.636538e-03

Joint ci ratio: 7.435586e-02	ci left: 2.541815e-03	ci right 2.739039e-03	k: 2771	n:1050000
Cons ci ratio: 5.034655e-03	ci left: 3.651052e-01	ci right 3.669489e-01	k: 384328	n:1050000
KS ci ratio: 1.473771e-01	ci left: 6.237063e-04	ci right 7.238433e-04	k: 706	n:1050000
GPR141   1050000 perm   603 sec   (1741 perm/sec)   p_kst 6.723810e-04   p_cons 3.660267e-01   p_joint 2.639048e-03

Joint ci ratio: 7.434335e-02	ci left: 2.518761e-03	ci right 2.714162e-03	k: 2772	n:1060000
Cons ci ratio: 5.011026e-03	ci left: 3.650932e-01	ci right 3.669282e-01	k: 387971	n:1060000
KS ci ratio: 1.462435e-01	ci left: 6.278186e-04	ci right 7.277727e-04	k: 717	n:1060000
GPR141   1060000 perm   613 sec   (1729 perm/sec)   p_kst 6.764151e-04   p_cons 3.660104e-01   p_joint 2.615094e-03

Joint ci ratio: 7.401052e-02	ci left: 2.518152e-03	ci right 2.712593e-03	k: 2797	n:1070000
Cons ci ratio: 4.987516e-03	ci left: 3.651012e-01	ci right 3.669276e-01	k: 391635	n:1070000
KS ci ratio: 1.457370e-01	ci left: 6.264533e-04	ci right 7.258146e-04	k: 722	n:1070000
GPR141   1070000 perm   623 sec   (1717 perm/sec)   p_kst 6.747664e-04   p_cons 3.660140e-01   p_joint 2.614019e-03

Joint ci ratio: 7.361678e-02	ci left: 2.522101e-03	ci right 2.715767e-03	k: 2827	n:1080000
Cons ci ratio: 4.963759e-03	ci left: 3.651627e-01	ci right 3.669806e-01	k: 395357	n:1080000
KS ci ratio: 1.452358e-01	ci left: 6.251139e-04	ci right 7.238922e-04	k: 727	n:1080000
GPR141   1080000 perm   633 sec   (1706 perm/sec)   p_kst 6.731481e-04   p_cons 3.660713e-01   p_joint 2.617593e-03

Joint ci ratio: 7.328069e-02	ci left: 2.522378e-03	ci right 2.715143e-03	k: 2853	n:1090000
Cons ci ratio: 4.941325e-03	ci left: 3.651304e-01	ci right 3.669400e-01	k: 398978	n:1090000
KS ci ratio: 1.446410e-01	ci left: 6.246838e-04	ci right 7.229551e-04	k: 733	n:1090000
GPR141   1090000 perm   643 sec   (1695 perm/sec)   p_kst 6.724771e-04   p_cons 3.660349e-01   p_joint 2.617431e-03

Joint ci ratio: 7.169942e-02	ci left: 2.612813e-03	ci right 2.808002e-03	k: 2980	n:1100000
Cons ci ratio: 4.918836e-03	ci left: 3.651324e-01	ci right 3.669337e-01	k: 402636	n:1100000
KS ci ratio: 1.442487e-01	ci left: 6.225098e-04	ci right 7.201505e-04	k: 737	n:1100000
GPR141   1100000 perm   653 sec   (1685 perm/sec)   p_kst 6.700000e-04   p_cons 3.660327e-01   p_joint 2.709091e-03

Joint ci ratio: 7.131749e-02	ci left: 2.617588e-03	ci right 2.812049e-03	k: 3012	n:1110000
Cons ci ratio: 4.896746e-03	ci left: 3.651254e-01	ci right 3.669186e-01	k: 406284	n:1110000
KS ci ratio: 1.438596e-01	ci left: 6.203752e-04	ci right 7.173961e-04	k: 741	n:1110000
GPR141   1110000 perm   663 sec   (1674 perm/sec)   p_kst 6.675676e-04   p_cons 3.660216e-01   p_joint 2.713514e-03

Joint ci ratio: 7.097668e-02	ci left: 2.619649e-03	ci right 2.813294e-03	k: 3041	n:1120000
Cons ci ratio: 4.874558e-03	ci left: 3.651560e-01	ci right 3.669412e-01	k: 409974	n:1120000
KS ci ratio: 1.433774e-01	ci left: 6.191400e-04	ci right 7.156154e-04	k: 746	n:1120000
GPR141   1120000 perm   673 sec   (1664 perm/sec)   p_kst 6.660714e-04   p_cons 3.660482e-01   p_joint 2.715179e-03

Joint ci ratio: 6.709652e-02	ci left: 2.910439e-03	ci right 3.113361e-03	k: 3402	n:1130000
Cons ci ratio: 4.853445e-03	ci left: 3.651117e-01	ci right 3.668890e-01	k: 413580	n:1130000
KS ci ratio: 1.430906e-01	ci left: 6.162206e-04	ci right 7.120326e-04	k: 749	n:1130000
GPR141   1130000 perm   683 sec   (1654 perm/sec)   p_kst 6.628319e-04   p_cons 3.660000e-01   p_joint 3.010619e-03

Joint ci ratio: 6.783105e-02	ci left: 2.821949e-03	ci right 3.020941e-03	k: 3329	n:1140000
Cons ci ratio: 4.832769e-03	ci left: 3.650525e-01	ci right 3.668218e-01	k: 417168	n:1140000
KS ci ratio: 1.429005e-01	ci left: 6.125067e-04	ci right 7.076039e-04	k: 751	n:1140000
GPR141   1140000 perm   694 sec   (1644 perm/sec)   p_kst 6.587719e-04   p_cons 3.659368e-01   p_joint 2.920175e-03

Joint ci ratio: 6.753761e-02	ci left: 2.822201e-03	ci right 3.020316e-03	k: 3358	n:1150000
Cons ci ratio: 4.812192e-03	ci left: 3.650100e-01	ci right 3.667716e-01	k: 420774	n:1150000
KS ci ratio: 1.422400e-01	ci left: 6.130504e-04	ci right 7.077547e-04	k: 758	n:1150000
GPR141   1150000 perm   704 sec   (1633 perm/sec)   p_kst 6.591304e-04   p_cons 3.658904e-01   p_joint 2.920000e-03

Joint ci ratio: 6.734770e-02	ci left: 2.813974e-03	ci right 3.010934e-03	k: 3377	n:1160000
Cons ci ratio: 4.791271e-03	ci left: 3.650268e-01	ci right 3.667808e-01	k: 424448	n:1160000
KS ci ratio: 1.418668e-01	ci left: 6.110911e-04	ci right 7.052242e-04	k: 762	n:1160000
GPR141   1160000 perm   715 sec   (1623 perm/sec)   p_kst 6.568966e-04   p_cons 3.659034e-01   p_joint 2.911207e-03

Joint ci ratio: 6.706047e-02	ci left: 2.814293e-03	ci right 3.010403e-03	k: 3406	n:1170000
Cons ci ratio: 4.769996e-03	ci left: 3.651040e-01	ci right 3.668505e-01	k: 428193	n:1170000
KS ci ratio: 1.414043e-01	ci left: 6.099902e-04	ci right 7.036215e-04	k: 767	n:1170000
GPR141   1170000 perm   725 sec   (1613 perm/sec)   p_kst 6.555556e-04   p_cons 3.659769e-01   p_joint 2.911111e-03

Joint ci ratio: 6.682565e-02	ci left: 2.810442e-03	ci right 3.005570e-03	k: 3430	n:1180000
Cons ci ratio: 4.749714e-03	ci left: 3.651104e-01	ci right 3.668495e-01	k: 431856	n:1180000
KS ci ratio: 1.411292e-01	ci left: 6.072732e-04	ci right 7.002909e-04	k: 770	n:1180000
GPR141   1180000 perm   736 sec   (1603 perm/sec)   p_kst 6.525424e-04   p_cons 3.659797e-01   p_joint 2.906780e-03

Joint ci ratio: 6.656432e-02	ci left: 2.809135e-03	ci right 3.003381e-03	k: 3457	n:1190000
Cons ci ratio: 4.730116e-03	ci left: 3.650748e-01	ci right 3.668065e-01	k: 435469	n:1190000
KS ci ratio: 1.404928e-01	ci left: 6.078452e-04	ci right 7.004955e-04	k: 777	n:1190000
GPR141   1190000 perm   746 sec   (1594 perm/sec)   p_kst 6.529412e-04   p_cons 3.659403e-01   p_joint 2.905042e-03

Joint ci ratio: 6.634421e-02	ci left: 2.804574e-03	ci right 2.997838e-03	k: 3480	n:1200000
Cons ci ratio: 4.711359e-03	ci left: 3.649806e-01	ci right 3.667050e-01	k: 439011	n:1200000
KS ci ratio: 1.402229e-01	ci left: 6.051920e-04	ci right 6.972459e-04	k: 780	n:1200000
GPR141   1200000 perm   757 sec   (1585 perm/sec)   p_kst 6.500000e-04   p_cons 3.658425e-01   p_joint 2.900000e-03

Joint ci ratio: 6.606014e-02	ci left: 2.805778e-03	ci right 2.998266e-03	k: 3510	n:1210000
Cons ci ratio: 4.692472e-03	ci left: 3.649227e-01	ci right 3.666399e-01	k: 442595	n:1210000
KS ci ratio: 1.395987e-01	ci left: 6.057730e-04	ci right 6.974710e-04	k: 787	n:1210000
GPR141   1210000 perm   768 sec   (1576 perm/sec)   p_kst 6.504132e-04   p_cons 3.657810e-01   p_joint 2.900826e-03

Joint ci ratio: 6.741260e-02	ci left: 2.670741e-03	ci right 2.857862e-03	k: 3371	n:1220000
Cons ci ratio: 4.672927e-03	ci left: 3.649534e-01	ci right 3.666636e-01	k: 446286	n:1220000
KS ci ratio: 1.389827e-01	ci left: 6.063454e-04	ci right 6.976915e-04	k: 794	n:1220000
GPR141   1220000 perm   779 sec   (1566 perm/sec)   p_kst 6.508197e-04   p_cons 3.658082e-01   p_joint 2.763115e-03

Joint ci ratio: 6.529222e-02	ci left: 2.826528e-03	ci right 3.018101e-03	k: 3593	n:1230000
Cons ci ratio: 4.654489e-03	ci left: 3.648975e-01	ci right 3.666007e-01	k: 449871	n:1230000
KS ci ratio: 1.382886e-01	ci left: 6.076943e-04	ci right 6.987487e-04	k: 802	n:1230000
GPR141   1230000 perm   790 sec   (1558 perm/sec)   p_kst 6.520325e-04   p_cons 3.657488e-01   p_joint 2.921138e-03

Joint ci ratio: 6.508446e-02	ci left: 2.821980e-03	ci right 3.012612e-03	k: 3616	n:1240000
Cons ci ratio: 4.635791e-03	ci left: 3.648901e-01	ci right 3.665863e-01	k: 453515	n:1240000
KS ci ratio: 1.377748e-01	ci left: 6.074652e-04	ci right 6.981193e-04	k: 808	n:1240000
GPR141   1240000 perm   801 sec   (1549 perm/sec)   p_kst 6.516129e-04   p_cons 3.657379e-01   p_joint 2.916129e-03

Joint ci ratio: 6.486080e-02	ci left: 2.819079e-03	ci right 3.008836e-03	k: 3641	n:1250000
Cons ci ratio: 4.617572e-03	ci left: 3.648572e-01	ci right 3.665466e-01	k: 457127	n:1250000
KS ci ratio: 1.372668e-01	ci left: 6.072403e-04	ci right 6.974994e-04	k: 814	n:1250000
GPR141   1250000 perm   812 sec   (1540 perm/sec)   p_kst 6.512000e-04   p_cons 3.657016e-01   p_joint 2.912800e-03

Joint ci ratio: 6.461293e-02	ci left: 2.818568e-03	ci right 3.007538e-03	k: 3669	n:1260000
Cons ci ratio: 4.599669e-03	ci left: 3.648145e-01	ci right 3.664972e-01	k: 460726	n:1260000
KS ci ratio: 1.367643e-01	ci left: 6.070196e-04	ci right 6.968888e-04	k: 820	n:1260000
GPR141   1260000 perm   823 sec   (1531 perm/sec)   p_kst 6.507937e-04   p_cons 3.656556e-01   p_joint 2.911905e-03

Joint ci ratio: 6.591424e-02	ci left: 2.685607e-03	ci right 2.869428e-03	k: 3526	n:1270000
Cons ci ratio: 4.581560e-03	ci left: 3.648143e-01	ci right 3.664903e-01	k: 464378	n:1270000
KS ci ratio: 1.361027e-01	ci left: 6.083241e-04	ci right 6.979155e-04	k: 828	n:1270000
GPR141   1270000 perm   834 sec   (1522 perm/sec)   p_kst 6.519685e-04   p_cons 3.656520e-01   p_joint 2.776378e-03

Joint ci ratio: 6.566341e-02	ci left: 2.685372e-03	ci right 2.868451e-03	k: 3553	n:1280000
Cons ci ratio: 4.563355e-03	ci left: 3.648453e-01	ci right 3.665147e-01	k: 468070	n:1280000
KS ci ratio: 1.352084e-01	ci left: 6.118738e-04	ci right 7.013482e-04	k: 839	n:1280000
GPR141   1280000 perm   846 sec   (1514 perm/sec)   p_kst 6.554688e-04   p_cons 3.656797e-01   p_joint 2.775781e-03

Joint ci ratio: 6.541542e-02	ci left: 2.685143e-03	ci right 2.867489e-03	k: 3580	n:1290000
Cons ci ratio: 4.545738e-03	ci left: 3.648378e-01	ci right 3.665008e-01	k: 471713	n:1290000
KS ci ratio: 1.346485e-01	ci left: 6.123738e-04	ci right 7.015208e-04	k: 846	n:1290000
GPR141   1290000 perm   857 sec   (1505 perm/sec)   p_kst 6.558140e-04   p_cons 3.656690e-01   p_joint 2.775194e-03

Joint ci ratio: 6.539781e-02	ci left: 2.666000e-03	ci right 2.846996e-03	k: 3582	n:1300000
Cons ci ratio: 4.527911e-03	ci left: 3.648728e-01	ci right 3.665294e-01	k: 475411	n:1300000
KS ci ratio: 1.337824e-01	ci left: 6.158407e-04	ci right 7.048699e-04	k: 857	n:1300000
GPR141   1300000 perm   869 sec   (1496 perm/sec)   p_kst 6.592308e-04   p_cons 3.657008e-01   p_joint 2.755385e-03

Joint ci ratio: 6.517090e-02	ci left: 2.664422e-03	ci right 2.844658e-03	k: 3607	n:1310000
Cons ci ratio: 4.510291e-03	ci left: 3.649072e-01	ci right 3.665575e-01	k: 479109	n:1310000
KS ci ratio: 1.336270e-01	ci left: 6.126152e-04	ci right 7.010670e-04	k: 859	n:1310000
GPR141   1310000 perm   880 sec   (1488 perm/sec)   p_kst 6.557252e-04   p_cons 3.657321e-01   p_joint 2.753435e-03

Joint ci ratio: 6.212858e-02	ci left: 2.913382e-03	ci right 3.100930e-03	k: 3968	n:1320000
Cons ci ratio: 4.493918e-03	ci left: 3.648336e-01	ci right 3.664776e-01	k: 482665	n:1320000
KS ci ratio: 1.327803e-01	ci left: 6.160299e-04	ci right 7.043667e-04	k: 870	n:1320000
GPR141   1320000 perm   892 sec   (1480 perm/sec)   p_kst 6.590909e-04   p_cons 3.656553e-01   p_joint 3.006061e-03

Joint ci ratio: 6.191841e-02	ci left: 2.911463e-03	ci right 3.098230e-03	k: 3995	n:1330000
Cons ci ratio: 4.477337e-03	ci left: 3.648010e-01	ci right 3.664387e-01	k: 486274	n:1330000
KS ci ratio: 1.321746e-01	ci left: 6.172138e-04	ci right 7.052849e-04	k: 878	n:1330000
GPR141   1330000 perm   904 sec   (1472 perm/sec)   p_kst 6.601504e-04   p_cons 3.656195e-01   p_joint 3.003759e-03

Joint ci ratio: 6.169497e-02	ci left: 2.911043e-03	ci right 3.097085e-03	k: 4024	n:1340000
Cons ci ratio: 4.460335e-03	ci left: 3.648315e-01	ci right 3.664631e-01	k: 489967	n:1340000
KS ci ratio: 1.318003e-01	ci left: 6.162159e-04	ci right 7.038761e-04	k: 883	n:1340000
GPR141   1340000 perm   916 sec   (1464 perm/sec)   p_kst 6.589552e-04   p_cons 3.656470e-01   p_joint 3.002985e-03

Joint ci ratio: 6.145872e-02	ci left: 2.912089e-03	ci right 3.097460e-03	k: 4055	n:1350000
Cons ci ratio: 4.443298e-03	ci left: 3.648853e-01	ci right 3.665109e-01	k: 493692	n:1350000
KS ci ratio: 1.315033e-01	ci left: 6.145166e-04	ci right 7.017228e-04	k: 887	n:1350000
GPR141   1350000 perm   927 sec   (1456 perm/sec)   p_kst 6.570370e-04   p_cons 3.656978e-01   p_joint 3.003704e-03

Joint ci ratio: 6.123269e-02	ci left: 2.912397e-03	ci right 3.097082e-03	k: 4085	n:1360000
Cons ci ratio: 4.426974e-03	ci left: 3.648839e-01	ci right 3.665035e-01	k: 497343	n:1360000
KS ci ratio: 1.309148e-01	ci left: 6.156874e-04	ci right 7.026383e-04	k: 895	n:1360000
GPR141   1360000 perm   940 sec   (1448 perm/sec)   p_kst 6.580882e-04   p_cons 3.656934e-01   p_joint 3.003676e-03

Joint ci ratio: 6.147528e-02	ci left: 2.868138e-03	ci right 3.050762e-03	k: 4053	n:1370000
Cons ci ratio: 4.410677e-03	ci left: 3.648985e-01	ci right 3.665122e-01	k: 501016	n:1370000
KS ci ratio: 1.306964e-01	ci left: 6.133114e-04	ci right 6.997711e-04	k: 898	n:1370000
GPR141   1370000 perm   952 sec   (1439 perm/sec)   p_kst 6.554745e-04   p_cons 3.657051e-01   p_joint 2.958394e-03

Joint ci ratio: 6.221918e-02	ci left: 2.778861e-03	ci right 2.958018e-03	k: 3957	n:1380000
Cons ci ratio: 4.394599e-03	ci left: 3.649087e-01	ci right 3.665165e-01	k: 504683	n:1380000
KS ci ratio: 1.302624e-01	ci left: 6.130731e-04	ci right 6.991899e-04	k: 904	n:1380000
GPR141   1380000 perm   964 sec   (1432 perm/sec)   p_kst 6.550725e-04   p_cons 3.657123e-01   p_joint 2.867391e-03

Joint ci ratio: 6.198469e-02	ci left: 2.780116e-03	ci right 2.958656e-03	k: 3987	n:1390000
Cons ci ratio: 4.379041e-03	ci left: 3.648820e-01	ci right 3.664840e-01	k: 508299	n:1390000
KS ci ratio: 1.298328e-01	ci left: 6.128386e-04	ci right 6.986167e-04	k: 910	n:1390000
GPR141   1390000 perm   976 sec   (1424 perm/sec)   p_kst 6.546763e-04   p_cons 3.656827e-01   p_joint 2.868345e-03

Joint ci ratio: 6.203214e-02	ci left: 2.756038e-03	ci right 2.933171e-03	k: 3981	n:1400000
Cons ci ratio: 4.363118e-03	ci left: 3.649121e-01	ci right 3.665084e-01	k: 511994	n:1400000
KS ci ratio: 1.293368e-01	ci left: 6.132991e-04	ci right 6.987886e-04	k: 917	n:1400000
GPR141   1400000 perm   988 sec   (1416 perm/sec)   p_kst 6.550000e-04   p_cons 3.657100e-01   p_joint 2.843571e-03

Joint ci ratio: 6.175346e-02	ci left: 2.761629e-03	ci right 2.938295e-03	k: 4017	n:1410000
Cons ci ratio: 4.347951e-03	ci left: 3.648794e-01	ci right 3.664701e-01	k: 515601	n:1410000
KS ci ratio: 1.288465e-01	ci left: 6.137537e-04	ci right 6.989574e-04	k: 924	n:1410000
GPR141   1410000 perm   1001 sec   (1409 perm/sec)   p_kst 6.553191e-04   p_cons 3.656745e-01   p_joint 2.848936e-03

Joint ci ratio: 6.174637e-02	ci left: 2.742873e-03	ci right 2.918319e-03	k: 4018	n:1420000
Cons ci ratio: 4.332652e-03	ci left: 3.648782e-01	ci right 3.664632e-01	k: 519252	n:1420000
KS ci ratio: 1.282241e-01	ci left: 6.155657e-04	ci right 7.005768e-04	k: 933	n:1420000
GPR141   1420000 perm   1013 sec   (1401 perm/sec)   p_kst 6.570423e-04   p_cons 3.656704e-01   p_joint 2.829577e-03

Joint ci ratio: 6.153241e-02	ci left: 2.742971e-03	ci right 2.917793e-03	k: 4046	n:1430000
Cons ci ratio: 4.316947e-03	ci left: 3.649378e-01	ci right 3.665173e-01	k: 522990	n:1430000
KS ci ratio: 1.278142e-01	ci left: 6.153225e-04	ci right 7.000078e-04	k: 939	n:1430000
GPR141   1430000 perm   1026 sec   (1394 perm/sec)   p_kst 6.566434e-04   p_cons 3.657273e-01   p_joint 2.829371e-03

Joint ci ratio: 6.135085e-02	ci left: 2.740333e-03	ci right 2.914454e-03	k: 4070	n:1440000
Cons ci ratio: 4.301573e-03	ci left: 3.649792e-01	ci right 3.665533e-01	k: 526703	n:1440000
KS ci ratio: 1.272066e-01	ci left: 6.171001e-04	ci right 7.015958e-04	k: 948	n:1440000
GPR141   1440000 perm   1038 sec   (1387 perm/sec)   p_kst 6.583333e-04   p_cons 3.657660e-01   p_joint 2.826389e-03

Joint ci ratio: 6.109613e-02	ci left: 2.744524e-03	ci right 2.918161e-03	k: 4104	n:1450000
Cons ci ratio: 4.286515e-03	ci left: 3.650035e-01	ci right 3.665722e-01	k: 530392	n:1450000
KS ci ratio: 1.265415e-01	ci left: 6.195220e-04	ci right 7.038725e-04	k: 958	n:1450000
GPR141   1450000 perm   1051 sec   (1379 perm/sec)   p_kst 6.606897e-04   p_cons 3.657876e-01   p_joint 2.830345e-03

Joint ci ratio: 6.238233e-02	ci left: 2.613102e-03	ci right 2.782031e-03	k: 3937	n:1460000
Cons ci ratio: 4.272566e-03	ci left: 3.649242e-01	ci right 3.664873e-01	k: 533930	n:1460000
KS ci ratio: 1.259518e-01	ci left: 6.212484e-04	ci right 7.054104e-04	k: 967	n:1460000
GPR141   1460000 perm   1064 sec   (1372 perm/sec)   p_kst 6.623288e-04   p_cons 3.657055e-01   p_joint 2.696575e-03

Joint ci ratio: 6.216171e-02	ci left: 2.614077e-03	ci right 2.782450e-03	k: 3965	n:1470000
Cons ci ratio: 4.257360e-03	ci left: 3.649975e-01	ci right 3.665554e-01	k: 537691	n:1470000
KS ci ratio: 1.253702e-01	ci left: 6.229523e-04	ci right 7.069264e-04	k: 976	n:1470000
GPR141   1470000 perm   1077 sec   (1365 perm/sec)   p_kst 6.639456e-04   p_cons 3.657762e-01   p_joint 2.697279e-03

Joint ci ratio: 6.029313e-02	ci left: 2.762089e-03	ci right 2.934461e-03	k: 4214	n:1480000
Cons ci ratio: 4.243000e-03	ci left: 3.649949e-01	ci right 3.665475e-01	k: 541341	n:1480000
KS ci ratio: 1.249870e-01	ci left: 6.226702e-04	ci right 7.063308e-04	k: 982	n:1480000
GPR141   1480000 perm   1090 sec   (1358 perm/sec)   p_kst 6.635135e-04   p_cons 3.657709e-01   p_joint 2.847297e-03

Joint ci ratio: 6.001590e-02	ci left: 2.769332e-03	ci right 2.941334e-03	k: 4253	n:1490000
Cons ci ratio: 4.228437e-03	ci left: 3.650306e-01	ci right 3.665780e-01	k: 545048	n:1490000
KS ci ratio: 1.246073e-01	ci left: 6.223924e-04	ci right 7.057429e-04	k: 988	n:1490000
GPR141   1490000 perm   1103 sec   (1351 perm/sec)   p_kst 6.630872e-04   p_cons 3.658040e-01   p_joint 2.854362e-03

Joint ci ratio: 5.980536e-02	ci left: 2.770571e-03	ci right 2.942025e-03	k: 4283	n:1500000
Cons ci ratio: 4.213998e-03	ci left: 3.650684e-01	ci right 3.666107e-01	k: 548759	n:1500000
KS ci ratio: 1.242311e-01	ci left: 6.221186e-04	ci right 7.051623e-04	k: 994	n:1500000
GPR141   1500000 perm   1115 sec   (1345 perm/sec)   p_kst 6.626667e-04   p_cons 3.658393e-01   p_joint 2.855333e-03

Joint ci ratio: 5.934920e-02	ci left: 2.795281e-03	ci right 2.966899e-03	k: 4349	n:1510000
Cons ci ratio: 4.200179e-03	ci left: 3.650535e-01	ci right 3.665907e-01	k: 552391	n:1510000
KS ci ratio: 1.237964e-01	ci left: 6.224905e-04	ci right 7.052719e-04	k: 1001	n:1510000
GPR141   1510000 perm   1129 sec   (1338 perm/sec)   p_kst 6.629139e-04   p_cons 3.658219e-01   p_joint 2.880132e-03

Joint ci ratio: 5.920661e-02	ci left: 2.790502e-03	ci right 2.961401e-03	k: 4370	n:1520000
Cons ci ratio: 4.186377e-03	ci left: 3.650520e-01	ci right 3.665841e-01	k: 556043	n:1520000
KS ci ratio: 1.236116e-01	ci left: 6.203078e-04	ci right 7.026667e-04	k: 1004	n:1520000
GPR141   1520000 perm   1142 sec   (1331 perm/sec)   p_kst 6.605263e-04   p_cons 3.658178e-01   p_joint 2.875000e-03

Joint ci ratio: 5.895744e-02	ci left: 2.796089e-03	ci right 2.966586e-03	k: 4407	n:1530000
Cons ci ratio: 4.172469e-03	ci left: 3.650772e-01	ci right 3.666043e-01	k: 559736	n:1530000
KS ci ratio: 1.229405e-01	ci left: 6.232214e-04	ci right 7.054852e-04	k: 1015	n:1530000
GPR141   1530000 perm   1156 sec   (1324 perm/sec)   p_kst 6.633987e-04   p_cons 3.658405e-01   p_joint 2.880392e-03

Joint ci ratio: 5.879103e-02	ci left: 2.793927e-03	ci right 2.963795e-03	k: 4432	n:1540000
Cons ci ratio: 4.158937e-03	ci left: 3.650756e-01	ci right 3.665977e-01	k: 563388	n:1540000
KS ci ratio: 1.224592e-01	ci left: 6.242099e-04	ci right 7.062583e-04	k: 1023	n:1540000
GPR141   1540000 perm   1169 sec   (1318 perm/sec)   p_kst 6.642857e-04   p_cons 3.658364e-01   p_joint 2.877922e-03

Joint ci ratio: 5.864582e-02	ci left: 2.789887e-03	ci right 2.959076e-03	k: 4454	n:1550000
Cons ci ratio: 4.145190e-03	ci left: 3.651126e-01	ci right 3.666298e-01	k: 567100	n:1550000
KS ci ratio: 1.222209e-01	ci left: 6.226844e-04	ci right 7.043614e-04	k: 1027	n:1550000
GPR141   1550000 perm   1182 sec   (1311 perm/sec)   p_kst 6.625806e-04   p_cons 3.658710e-01   p_joint 2.873548e-03

Joint ci ratio: 5.852790e-02	ci left: 2.783372e-03	ci right 2.951815e-03	k: 4472	n:1560000
Cons ci ratio: 4.132019e-03	ci left: 3.650998e-01	ci right 3.666122e-01	k: 570735	n:1560000
KS ci ratio: 1.219839e-01	ci left: 6.211785e-04	ci right 7.024887e-04	k: 1031	n:1560000
GPR141   1560000 perm   1196 sec   (1305 perm/sec)   p_kst 6.608974e-04   p_cons 3.658558e-01   p_joint 2.866667e-03

Joint ci ratio: 5.833909e-02	ci left: 2.783845e-03	ci right 2.951755e-03	k: 4501	n:1570000
Cons ci ratio: 4.118717e-03	ci left: 3.651159e-01	ci right 3.666234e-01	k: 574415	n:1570000
KS ci ratio: 1.214553e-01	ci left: 6.227800e-04	ci right 7.039211e-04	k: 1040	n:1570000
GPR141   1570000 perm   1209 sec   (1298 perm/sec)   p_kst 6.624204e-04   p_cons 3.658694e-01   p_joint 2.866879e-03

Joint ci ratio: 5.783294e-02	ci left: 2.815501e-03	ci right 2.983797e-03	k: 4580	n:1580000
Cons ci ratio: 4.105510e-03	ci left: 3.651356e-01	ci right 3.666383e-01	k: 578101	n:1580000
KS ci ratio: 1.209336e-01	ci left: 6.243619e-04	ci right 7.053347e-04	k: 1049	n:1580000
GPR141   1580000 perm   1223 sec   (1292 perm/sec)   p_kst 6.639241e-04   p_cons 3.658867e-01   p_joint 2.898734e-03

Joint ci ratio: 5.760690e-02	ci left: 2.820109e-03	ci right 2.988000e-03	k: 4616	n:1590000
Cons ci ratio: 4.092944e-03	ci left: 3.650965e-01	ci right 3.665945e-01	k: 581694	n:1590000
KS ci ratio: 1.206467e-01	ci left: 6.234847e-04	ci right 7.041383e-04	k: 1054	n:1590000
GPR141   1590000 perm   1236 sec   (1286 perm/sec)   p_kst 6.628931e-04   p_cons 3.658453e-01   p_joint 2.903145e-03

Joint ci ratio: 5.747648e-02	ci left: 2.815419e-03	ci right 2.982639e-03	k: 4637	n:1600000
Cons ci ratio: 4.080224e-03	ci left: 3.650886e-01	ci right 3.665819e-01	k: 585336	n:1600000
KS ci ratio: 1.201918e-01	ci left: 6.244373e-04	ci right 7.048879e-04	k: 1062	n:1600000
GPR141   1600000 perm   1250 sec   (1280 perm/sec)   p_kst 6.637500e-04   p_cons 3.658350e-01   p_joint 2.898125e-03

Joint ci ratio: 5.725458e-02	ci left: 2.819971e-03	ci right 2.986794e-03	k: 4673	n:1610000
Cons ci ratio: 4.067867e-03	ci left: 3.650528e-01	ci right 3.665414e-01	k: 588933	n:1610000
KS ci ratio: 1.197421e-01	ci left: 6.253787e-04	ci right 7.056277e-04	k: 1070	n:1610000
GPR141   1610000 perm   1264 sec   (1274 perm/sec)   p_kst 6.645963e-04   p_cons 3.657969e-01   p_joint 2.902484e-03

Joint ci ratio: 5.713264e-02	ci left: 2.814733e-03	ci right 2.980879e-03	k: 4693	n:1620000
Cons ci ratio: 4.055049e-03	ci left: 3.650829e-01	ci right 3.665669e-01	k: 592636	n:1620000
KS ci ratio: 1.194081e-01	ci left: 6.251112e-04	ci right 7.050864e-04	k: 1076	n:1620000
GPR141   1620000 perm   1278 sec   (1268 perm/sec)   p_kst 6.641975e-04   p_cons 3.658247e-01   p_joint 2.896914e-03

Joint ci ratio: 5.703574e-02	ci left: 2.807140e-03	ci right 2.972548e-03	k: 4709	n:1630000
Cons ci ratio: 4.042930e-03	ci left: 3.650464e-01	ci right 3.665258e-01	k: 596231	n:1630000
KS ci ratio: 1.192422e-01	ci left: 6.230617e-04	ci right 7.026562e-04	k: 1079	n:1630000
GPR141   1630000 perm   1292 sec   (1262 perm/sec)   p_kst 6.619632e-04   p_cons 3.657859e-01   p_joint 2.888957e-03

Joint ci ratio: 5.683691e-02	ci left: 2.809859e-03	ci right 2.974831e-03	k: 4742	n:1640000
Cons ci ratio: 4.030531e-03	ci left: 3.650549e-01	ci right 3.665298e-01	k: 599899	n:1640000
KS ci ratio: 1.189672e-01	ci left: 6.222205e-04	ci right 7.015113e-04	k: 1084	n:1640000
GPR141   1640000 perm   1306 sec   (1256 perm/sec)   p_kst 6.609756e-04   p_cons 3.657921e-01   p_joint 2.891463e-03

Joint ci ratio: 5.717080e-02	ci left: 2.759970e-03	ci right 2.922995e-03	k: 4687	n:1650000
Cons ci ratio: 4.017989e-03	ci left: 3.650929e-01	ci right 3.665634e-01	k: 603616	n:1650000
KS ci ratio: 1.186397e-01	ci left: 6.219778e-04	ci right 7.010041e-04	k: 1090	n:1650000
GPR141   1650000 perm   1320 sec   (1250 perm/sec)   p_kst 6.606061e-04   p_cons 3.658279e-01   p_joint 2.840606e-03

Joint ci ratio: 5.700084e-02	ci left: 2.759970e-03	ci right 2.922495e-03	k: 4715	n:1660000
Cons ci ratio: 4.006010e-03	ci left: 3.650787e-01	ci right 3.665447e-01	k: 607247	n:1660000
KS ci ratio: 1.184770e-01	ci left: 6.199845e-04	ci right 6.986420e-04	k: 1093	n:1660000
GPR141   1660000 perm   1334 sec   (1244 perm/sec)   p_kst 6.584337e-04   p_cons 3.658114e-01   p_joint 2.840361e-03

Joint ci ratio: 5.507856e-02	ci left: 2.940649e-03	ci right 3.107788e-03	k: 5049	n:1670000
Cons ci ratio: 3.994339e-03	ci left: 3.650413e-01	ci right 3.665029e-01	k: 610839	n:1670000
KS ci ratio: 1.179391e-01	ci left: 6.220830e-04	ci right 7.006234e-04	k: 1103	n:1670000
GPR141   1670000 perm   1349 sec   (1238 perm/sec)   p_kst 6.604790e-04   p_cons 3.657719e-01   p_joint 3.023353e-03

Joint ci ratio: 5.492654e-02	ci left: 2.939583e-03	ci right 3.106186e-03	k: 5077	n:1680000
Cons ci ratio: 3.982324e-03	ci left: 3.650561e-01	ci right 3.665134e-01	k: 614518	n:1680000
KS ci ratio: 1.174084e-01	ci left: 6.241574e-04	ci right 7.025805e-04	k: 1113	n:1680000
GPR141   1680000 perm   1363 sec   (1233 perm/sec)   p_kst 6.625000e-04   p_cons 3.657845e-01   p_joint 3.022024e-03

Joint ci ratio: 5.526647e-02	ci left: 2.886005e-03	ci right 3.050616e-03	k: 5015	n:1690000
Cons ci ratio: 3.970362e-03	ci left: 3.650773e-01	ci right 3.665302e-01	k: 618208	n:1690000
KS ci ratio: 1.170413e-01	ci left: 6.244847e-04	ci right 7.026866e-04	k: 1120	n:1690000
GPR141   1690000 perm   1377 sec   (1227 perm/sec)   p_kst 6.627219e-04   p_cons 3.658036e-01   p_joint 2.967456e-03

Joint ci ratio: 5.509098e-02	ci left: 2.887593e-03	ci right 3.051755e-03	k: 5047	n:1700000
Cons ci ratio: 3.958813e-03	ci left: 3.650624e-01	ci right 3.665110e-01	k: 621837	n:1700000
KS ci ratio: 1.165226e-01	ci left: 6.265218e-04	ci right 7.046073e-04	k: 1130	n:1700000
GPR141   1700000 perm   1392 sec   (1221 perm/sec)   p_kst 6.647059e-04   p_cons 3.657865e-01   p_joint 2.968824e-03

Joint ci ratio: 5.490090e-02	ci left: 2.890893e-03	ci right 3.054657e-03	k: 5082	n:1710000
Cons ci ratio: 3.947285e-03	ci left: 3.650570e-01	ci right 3.665014e-01	k: 625482	n:1710000
KS ci ratio: 1.160616e-01	ci left: 6.279681e-04	ci right 7.059029e-04	k: 1139	n:1710000
GPR141   1710000 perm   1406 sec   (1216 perm/sec)   p_kst 6.660819e-04   p_cons 3.657789e-01   p_joint 2.971930e-03

Joint ci ratio: 5.476108e-02	ci left: 2.888994e-03	ci right 3.052221e-03	k: 5108	n:1720000
Cons ci ratio: 3.935758e-03	ci left: 3.650633e-01	ci right 3.665035e-01	k: 629147	n:1720000
KS ci ratio: 1.158586e-01	ci left: 6.265752e-04	ci right 7.041918e-04	k: 1143	n:1720000
GPR141   1720000 perm   1421 sec   (1211 perm/sec)   p_kst 6.645349e-04   p_cons 3.657831e-01   p_joint 2.969767e-03

Joint ci ratio: 5.453718e-02	ci left: 2.896241e-03	ci right 3.059187e-03	k: 5150	n:1730000
Cons ci ratio: 3.924840e-03	ci left: 3.650094e-01	ci right 3.664454e-01	k: 632708	n:1730000
KS ci ratio: 1.154055e-01	ci left: 6.280052e-04	ci right 7.054741e-04	k: 1152	n:1730000
GPR141   1730000 perm   1435 sec   (1206 perm/sec)   p_kst 6.658960e-04   p_cons 3.657272e-01   p_joint 2.976879e-03

Joint ci ratio: 5.434749e-02	ci left: 2.900004e-03	ci right 3.062577e-03	k: 5186	n:1740000
Cons ci ratio: 3.913716e-03	ci left: 3.649912e-01	ci right 3.664230e-01	k: 636330	n:1740000
KS ci ratio: 1.149576e-01	ci left: 6.294194e-04	ci right 7.067409e-04	k: 1161	n:1740000
GPR141   1740000 perm   1449 sec   (1200 perm/sec)   p_kst 6.672414e-04   p_cons 3.657069e-01   p_joint 2.980460e-03

Joint ci ratio: 5.419622e-02	ci left: 2.899779e-03	ci right 3.061873e-03	k: 5215	n:1750000
Cons ci ratio: 3.902437e-03	ci left: 3.650029e-01	ci right 3.664307e-01	k: 640004	n:1750000
KS ci ratio: 1.145639e-01	ci left: 6.302630e-04	ci right 7.074050e-04	k: 1169	n:1750000
GPR141   1750000 perm   1464 sec   (1195 perm/sec)   p_kst 6.680000e-04   p_cons 3.657166e-01   p_joint 2.980000e-03

Joint ci ratio: 5.409276e-02	ci left: 2.894513e-03	ci right 3.055993e-03	k: 5235	n:1760000
Cons ci ratio: 3.891192e-03	ci left: 3.650219e-01	ci right 3.664456e-01	k: 643691	n:1760000
KS ci ratio: 1.142713e-01	ci left: 6.299935e-04	ci right 7.068923e-04	k: 1175	n:1760000
GPR141   1760000 perm   1479 sec   (1190 perm/sec)   p_kst 6.676136e-04   p_cons 3.657335e-01   p_joint 2.974432e-03

Joint ci ratio: 5.529230e-02	ci left: 2.753331e-03	ci right 2.910450e-03	k: 5011	n:1770000
Cons ci ratio: 3.880319e-03	ci left: 3.650079e-01	ci right 3.664276e-01	k: 647320	n:1770000
KS ci ratio: 1.140292e-01	ci left: 6.291784e-04	ci right 7.058040e-04	k: 1180	n:1770000
GPR141   1770000 perm   1494 sec   (1185 perm/sec)   p_kst 6.666667e-04   p_cons 3.657175e-01   p_joint 2.831073e-03

Joint ci ratio: 5.557702e-02	ci left: 2.709606e-03	ci right 2.865052e-03	k: 4960	n:1780000
Cons ci ratio: 3.869259e-03	ci left: 3.650272e-01	ci right 3.664429e-01	k: 651008	n:1780000
KS ci ratio: 1.137407e-01	ci left: 6.289184e-04	ci right 7.053056e-04	k: 1186	n:1780000
GPR141   1780000 perm   1509 sec   (1179 perm/sec)   p_kst 6.662921e-04   p_cons 3.657348e-01   p_joint 2.786517e-03

Joint ci ratio: 5.543756e-02	ci left: 2.708241e-03	ci right 2.863207e-03	k: 4985	n:1790000
Cons ci ratio: 3.858438e-03	ci left: 3.650290e-01	ci right 3.664407e-01	k: 654665	n:1790000
KS ci ratio: 1.133593e-01	ci left: 6.297473e-04	ci right 7.059615e-04	k: 1194	n:1790000
GPR141   1790000 perm   1525 sec   (1174 perm/sec)   p_kst 6.670391e-04   p_cons 3.657346e-01   p_joint 2.784916e-03

Joint ci ratio: 5.544914e-02	ci left: 2.692099e-03	ci right 2.846174e-03	k: 4983	n:1800000
Cons ci ratio: 3.847711e-03	ci left: 3.650302e-01	ci right 3.664380e-01	k: 658321	n:1800000
KS ci ratio: 1.131701e-01	ci left: 6.284079e-04	ci right 7.043247e-04	k: 1198	n:1800000
GPR141   1800000 perm   1540 sec   (1169 perm/sec)   p_kst 6.655556e-04   p_cons 3.657339e-01   p_joint 2.768333e-03

Joint ci ratio: 5.528851e-02	ci left: 2.693026e-03	ci right 2.846693e-03	k: 5012	n:1810000
Cons ci ratio: 3.837115e-03	ci left: 3.650265e-01	ci right 3.664303e-01	k: 661968	n:1810000
KS ci ratio: 1.127477e-01	ci left: 6.297680e-04	ci right 7.055461e-04	k: 1207	n:1810000
GPR141   1810000 perm   1555 sec   (1164 perm/sec)   p_kst 6.668508e-04   p_cons 3.657282e-01   p_joint 2.769061e-03

Joint ci ratio: 5.506359e-02	ci left: 2.700446e-03	ci right 2.853890e-03	k: 5053	n:1820000
Cons ci ratio: 3.826370e-03	ci left: 3.650513e-01	ci right 3.664513e-01	k: 665667	n:1820000
KS ci ratio: 1.121916e-01	ci left: 6.327157e-04	ci right 7.084483e-04	k: 1219	n:1820000
GPR141   1820000 perm   1571 sec   (1159 perm/sec)   p_kst 6.697802e-04   p_cons 3.657511e-01   p_joint 2.776374e-03

Joint ci ratio: 5.493879e-02	ci left: 2.698085e-03	ci right 2.851036e-03	k: 5076	n:1830000
Cons ci ratio: 3.815894e-03	ci left: 3.650540e-01	ci right 3.664502e-01	k: 669326	n:1830000
KS ci ratio: 1.119625e-01	ci left: 6.319138e-04	ci right 7.073858e-04	k: 1224	n:1830000
GPR141   1830000 perm   1586 sec   (1154 perm/sec)   p_kst 6.688525e-04   p_cons 3.657519e-01   p_joint 2.773770e-03

Joint ci ratio: 5.476103e-02	ci left: 2.701111e-03	ci right 2.853722e-03	k: 5109	n:1840000
Cons ci ratio: 3.805451e-03	ci left: 3.650633e-01	ci right 3.664556e-01	k: 672997	n:1840000
KS ci ratio: 1.117347e-01	ci left: 6.311209e-04	ci right 7.063347e-04	k: 1229	n:1840000
GPR141   1840000 perm   1602 sec   (1148 perm/sec)   p_kst 6.679348e-04   p_cons 3.657592e-01   p_joint 2.776630e-03

Joint ci ratio: 5.459563e-02	ci left: 2.703038e-03	ci right 2.855282e-03	k: 5140	n:1850000
Cons ci ratio: 3.794796e-03	ci left: 3.651086e-01	ci right 3.664972e-01	k: 676735	n:1850000
KS ci ratio: 1.113281e-01	ci left: 6.324386e-04	ci right 7.075172e-04	k: 1238	n:1850000
GPR141   1850000 perm   1618 sec   (1143 perm/sec)   p_kst 6.691892e-04   p_cons 3.658027e-01   p_joint 2.778378e-03

Joint ci ratio: 5.449515e-02	ci left: 2.698581e-03	ci right 2.850286e-03	k: 5159	n:1860000
Cons ci ratio: 3.784476e-03	ci left: 3.651233e-01	ci right 3.665083e-01	k: 680417	n:1860000
KS ci ratio: 1.111489e-01	ci left: 6.311291e-04	ci right 7.059237e-04	k: 1242	n:1860000
GPR141   1860000 perm   1633 sec   (1139 perm/sec)   p_kst 6.677419e-04   p_cons 3.658156e-01   p_joint 2.773656e-03

Joint ci ratio: 5.440576e-02	ci left: 2.693117e-03	ci right 2.844258e-03	k: 5176	n:1870000
Cons ci ratio: 3.774249e-03	ci left: 3.651369e-01	ci right 3.665181e-01	k: 684097	n:1870000
KS ci ratio: 1.108373e-01	ci left: 6.313934e-04	ci right 7.059959e-04	k: 1249	n:1870000
GPR141   1870000 perm   1649 sec   (1134 perm/sec)   p_kst 6.679144e-04   p_cons 3.658273e-01   p_joint 2.767914e-03

Joint ci ratio: 5.425400e-02	ci left: 2.694008e-03	ci right 2.844764e-03	k: 5205	n:1880000
Cons ci ratio: 3.764074e-03	ci left: 3.651540e-01	ci right 3.665315e-01	k: 687784	n:1880000
KS ci ratio: 1.104403e-01	ci left: 6.326898e-04	ci right 7.071602e-04	k: 1258	n:1880000
GPR141   1880000 perm   1664 sec   (1130 perm/sec)   p_kst 6.691489e-04   p_cons 3.658426e-01   p_joint 2.768617e-03

Joint ci ratio: 5.411905e-02	ci left: 2.693324e-03	ci right 2.843656e-03	k: 5231	n:1890000
Cons ci ratio: 3.754203e-03	ci left: 3.651434e-01	ci right 3.665173e-01	k: 691419	n:1890000
KS ci ratio: 1.100476e-01	ci left: 6.339728e-04	ci right 7.083117e-04	k: 1267	n:1890000
GPR141   1890000 perm   1680 sec   (1125 perm/sec)   p_kst 6.703704e-04   p_cons 3.658302e-01   p_joint 2.767725e-03

Joint ci ratio: 5.377017e-02	ci left: 2.714456e-03	ci right 2.864961e-03	k: 5299	n:1900000
Cons ci ratio: 3.744048e-03	ci left: 3.651777e-01	ci right 3.665480e-01	k: 695139	n:1900000
KS ci ratio: 1.097451e-01	ci left: 6.342191e-04	ci right 7.083692e-04	k: 1274	n:1900000
GPR141   1900000 perm   1696 sec   (1120 perm/sec)   p_kst 6.705263e-04   p_cons 3.658626e-01   p_joint 2.788947e-03

Joint ci ratio: 5.347793e-02	ci left: 2.730204e-03	ci right 2.880734e-03	k: 5357	n:1910000
Cons ci ratio: 3.734089e-03	ci left: 3.651975e-01	ci right 3.665642e-01	k: 698832	n:1910000
KS ci ratio: 1.095306e-01	ci left: 6.334445e-04	ci right 7.073501e-04	k: 1279	n:1910000
GPR141   1910000 perm   1713 sec   (1115 perm/sec)   p_kst 6.696335e-04   p_cons 3.658806e-01   p_joint 2.804712e-03

Joint ci ratio: 5.071898e-02	ci left: 3.022885e-03	ci right 3.180703e-03	k: 5954	n:1920000
Cons ci ratio: 3.724536e-03	ci left: 3.651764e-01	ci right 3.665396e-01	k: 702447	n:1920000
KS ci ratio: 1.091475e-01	ci left: 6.347047e-04	ci right 7.084816e-04	k: 1288	n:1920000
GPR141   1920000 perm   1729 sec   (1111 perm/sec)   p_kst 6.708333e-04   p_cons 3.658578e-01   p_joint 3.101042e-03

Joint ci ratio: 5.055784e-02	ci left: 3.026663e-03	ci right 3.184160e-03	k: 5992	n:1930000
Cons ci ratio: 3.714914e-03	ci left: 3.651732e-01	ci right 3.665329e-01	k: 706096	n:1930000
KS ci ratio: 1.089364e-01	ci left: 6.339361e-04	ci right 7.074720e-04	k: 1293	n:1930000
GPR141   1930000 perm   1745 sec   (1106 perm/sec)   p_kst 6.699482e-04   p_cons 3.658528e-01   p_joint 3.104663e-03

Joint ci ratio: 5.040660e-02	ci left: 3.029384e-03	ci right 3.186538e-03	k: 6028	n:1940000
Cons ci ratio: 3.705214e-03	ci left: 3.651892e-01	ci right 3.665453e-01	k: 709782	n:1940000
KS ci ratio: 1.085595e-01	ci left: 6.351814e-04	ci right 7.085905e-04	k: 1302	n:1940000
GPR141   1940000 perm   1761 sec   (1102 perm/sec)   p_kst 6.711340e-04   p_cons 3.658670e-01   p_joint 3.107216e-03

Joint ci ratio: 5.027751e-02	ci left: 3.029546e-03	ci right 3.186294e-03	k: 6059	n:1950000
Cons ci ratio: 3.695708e-03	ci left: 3.651900e-01	ci right 3.665427e-01	k: 713439	n:1950000
KS ci ratio: 1.081040e-01	ci left: 6.374123e-04	ci right 7.107505e-04	k: 1313	n:1950000
GPR141   1950000 perm   1778 sec   (1097 perm/sec)   p_kst 6.733333e-04   p_cons 3.658662e-01   p_joint 3.107179e-03

Joint ci ratio: 5.025296e-02	ci left: 3.017112e-03	ci right 3.173138e-03	k: 6065	n:1960000
Cons ci ratio: 3.686190e-03	ci left: 3.652016e-01	ci right 3.665508e-01	k: 717117	n:1960000
KS ci ratio: 1.078581e-01	ci left: 6.371387e-04	ci right 7.102681e-04	k: 1319	n:1960000
GPR141   1960000 perm   1794 sec   (1092 perm/sec)   p_kst 6.729592e-04   p_cons 3.658760e-01   p_joint 3.094388e-03

Joint ci ratio: 5.008386e-02	ci left: 3.022348e-03	ci right 3.178104e-03	k: 6106	n:1970000
Cons ci ratio: 3.676825e-03	ci left: 3.652030e-01	ci right 3.665487e-01	k: 720775	n:1970000
KS ci ratio: 1.074922e-01	ci left: 6.383500e-04	ci right 7.113541e-04	k: 1328	n:1970000
GPR141   1970000 perm   1811 sec   (1088 perm/sec)   p_kst 6.741117e-04   p_cons 3.658756e-01   p_joint 3.099492e-03

Joint ci ratio: 4.994091e-02	ci left: 3.024539e-03	ci right 3.179950e-03	k: 6141	n:1980000
Cons ci ratio: 3.667252e-03	ci left: 3.652396e-01	ci right 3.665820e-01	k: 724503	n:1980000
KS ci ratio: 1.071300e-01	ci left: 6.395495e-04	ci right 7.124288e-04	k: 1337	n:1980000
GPR141   1980000 perm   1828 sec   (1083 perm/sec)   p_kst 6.752525e-04   p_cons 3.659106e-01   p_joint 3.101515e-03

Joint ci ratio: 5.095400e-02	ci left: 2.889757e-03	ci right 3.041343e-03	k: 5900	n:1990000
Cons ci ratio: 3.658284e-03	ci left: 3.652086e-01	ci right 3.665476e-01	k: 728097	n:1990000
KS ci ratio: 1.069304e-01	ci left: 6.387810e-04	ci right 7.114286e-04	k: 1342	n:1990000
GPR141   1990000 perm   1844 sec   (1079 perm/sec)   p_kst 6.743719e-04   p_cons 3.658779e-01   p_joint 2.964824e-03

Joint ci ratio: 5.098038e-02	ci left: 2.872346e-03	ci right 3.023099e-03	k: 5894	n:2000000
Cons ci ratio: 3.648886e-03	ci left: 3.652409e-01	ci right 3.665765e-01	k: 731817	n:2000000
KS ci ratio: 1.066133e-01	ci left: 6.394803e-04	ci right 7.119782e-04	k: 1350	n:2000000
GPR141   2000000 perm   1861 sec   (1075 perm/sec)   p_kst 6.750000e-04   p_cons 3.659085e-01   p_joint 2.947000e-03

Joint ci ratio: 4.889510e-02	ci left: 3.109612e-03	ci right 3.265954e-03	k: 6406	n:2010000
Cons ci ratio: 3.639994e-03	ci left: 3.652176e-01	ci right 3.665499e-01	k: 735426	n:2010000
KS ci ratio: 1.062599e-01	ci left: 6.406572e-04	ci right 7.130328e-04	k: 1359	n:2010000
GPR141   2010000 perm   1878 sec   (1070 perm/sec)   p_kst 6.761194e-04   p_cons 3.658836e-01   p_joint 3.187065e-03

Joint ci ratio: 4.880007e-02	ci left: 3.106443e-03	ci right 3.262314e-03	k: 6431	n:2020000
Cons ci ratio: 3.630681e-03	ci left: 3.652565e-01	ci right 3.665855e-01	k: 739160	n:2020000
KS ci ratio: 1.061041e-01	ci left: 6.394132e-04	ci right 7.115357e-04	k: 1363	n:2020000
GPR141   2020000 perm   1895 sec   (1066 perm/sec)   p_kst 6.747525e-04   p_cons 3.659208e-01   p_joint 3.183663e-03

Joint ci ratio: 4.863009e-02	ci left: 3.113038e-03	ci right 3.268680e-03	k: 6476	n:2030000
Cons ci ratio: 3.621667e-03	ci left: 3.652659e-01	ci right 3.665916e-01	k: 742835	n:2030000
KS ci ratio: 1.057943e-01	ci left: 6.400999e-04	ci right 7.120759e-04	k: 1371	n:2030000
GPR141   2030000 perm   1912 sec   (1062 perm/sec)   p_kst 6.753695e-04   p_cons 3.659286e-01   p_joint 3.190148e-03

Joint ci ratio: 4.848052e-02	ci left: 3.117148e-03	ci right 3.272503e-03	k: 6516	n:2040000
Cons ci ratio: 3.612659e-03	ci left: 3.652831e-01	ci right 3.666056e-01	k: 746526	n:2040000
KS ci ratio: 1.054489e-01	ci left: 6.412574e-04	ci right 7.131135e-04	k: 1380	n:2040000
GPR141   2040000 perm   1929 sec   (1057 perm/sec)   p_kst 6.764706e-04   p_cons 3.659441e-01   p_joint 3.194118e-03

Joint ci ratio: 4.836564e-02	ci left: 3.116881e-03	ci right 3.271845e-03	k: 6547	n:2050000
Cons ci ratio: 3.604020e-03	ci left: 3.652611e-01	ci right 3.665803e-01	k: 750137	n:2050000
KS ci ratio: 1.052206e-01	ci left: 6.409790e-04	ci right 7.126388e-04	k: 1386	n:2050000
GPR141   2050000 perm   1947 sec   (1053 perm/sec)   p_kst 6.760976e-04   p_cons 3.659205e-01   p_joint 3.193659e-03

Joint ci ratio: 4.825892e-02	ci left: 3.115658e-03	ci right 3.270210e-03	k: 6576	n:2060000
Cons ci ratio: 3.595334e-03	ci left: 3.652533e-01	ci right 3.665694e-01	k: 753777	n:2060000
KS ci ratio: 1.048057e-01	ci left: 6.430670e-04	ci right 7.146594e-04	k: 1397	n:2060000
GPR141   2060000 perm   1964 sec   (1049 perm/sec)   p_kst 6.781553e-04   p_cons 3.659112e-01   p_joint 3.192233e-03

Joint ci ratio: 4.815657e-02	ci left: 3.113970e-03	ci right 3.268101e-03	k: 6604	n:2070000
Cons ci ratio: 3.586598e-03	ci left: 3.652602e-01	ci right 3.665730e-01	k: 757447	n:2070000
KS ci ratio: 1.046188e-01	ci left: 6.423126e-04	ci right 7.136856e-04	k: 1402	n:2070000
GPR141   2070000 perm   1981 sec   (1045 perm/sec)   p_kst 6.772947e-04   p_cons 3.659164e-01   p_joint 3.190338e-03

Joint ci ratio: 4.804397e-02	ci left: 3.113724e-03	ci right 3.267472e-03	k: 6635	n:2080000
Cons ci ratio: 3.577971e-03	ci left: 3.652612e-01	ci right 3.665709e-01	k: 761105	n:2080000
KS ci ratio: 1.043218e-01	ci left: 6.429703e-04	ci right 7.142011e-04	k: 1410	n:2080000
GPR141   2080000 perm   1999 sec   (1041 perm/sec)   p_kst 6.778846e-04   p_cons 3.659159e-01   p_joint 3.189904e-03

Joint ci ratio: 4.801169e-02	ci left: 3.103080e-03	ci right 3.256197e-03	k: 6644	n:2090000
Cons ci ratio: 3.569523e-03	ci left: 3.652469e-01	ci right 3.665535e-01	k: 764731	n:2090000
KS ci ratio: 1.040273e-01	ci left: 6.436219e-04	ci right 7.147113e-04	k: 1418	n:2090000
GPR141   2090000 perm   2016 sec   (1037 perm/sec)   p_kst 6.784689e-04   p_cons 3.659000e-01   p_joint 3.178947e-03

Joint ci ratio: 4.791450e-02	ci left: 3.101006e-03	ci right 3.253703e-03	k: 6671	n:2100000
Cons ci ratio: 3.560970e-03	ci left: 3.652542e-01	ci right 3.665576e-01	k: 768402	n:2100000
KS ci ratio: 1.037353e-01	ci left: 6.442676e-04	ci right 7.152163e-04	k: 1426	n:2100000
GPR141   2100000 perm   2034 sec   (1032 perm/sec)   p_kst 6.790476e-04   p_cons 3.659057e-01   p_joint 3.176667e-03

Joint ci ratio: 4.791846e-02	ci left: 3.085840e-03	ci right 3.237803e-03	k: 6670	n:2110000
Cons ci ratio: 3.552667e-03	ci left: 3.652368e-01	ci right 3.665371e-01	k: 772021	n:2110000
KS ci ratio: 1.034096e-01	ci left: 6.453691e-04	ci right 7.162025e-04	k: 1435	n:2110000
GPR141   2110000 perm   2051 sec   (1029 perm/sec)   p_kst 6.800948e-04   p_cons 3.658867e-01   p_joint 3.161137e-03

Joint ci ratio: 4.896051e-02	ci left: 2.940803e-03	ci right 3.088862e-03	k: 6390	n:2120000
Cons ci ratio: 3.544159e-03	ci left: 3.652539e-01	ci right 3.665512e-01	k: 775713	n:2120000
KS ci ratio: 1.031227e-01	ci left: 6.460010e-04	ci right 7.166952e-04	k: 1443	n:2120000
GPR141   2120000 perm   2069 sec   (1025 perm/sec)   p_kst 6.806604e-04   p_cons 3.659024e-01   p_joint 3.014151e-03

Joint ci ratio: 4.886509e-02	ci left: 2.938590e-03	ci right 3.086241e-03	k: 6415	n:2130000
Cons ci ratio: 3.535990e-03	ci left: 3.652343e-01	ci right 3.665285e-01	k: 779327	n:2130000
KS ci ratio: 1.027674e-01	ci left: 6.475422e-04	ci right 7.181461e-04	k: 1453	n:2130000
GPR141   2130000 perm   2085 sec   (1021 perm/sec)   p_kst 6.821596e-04   p_cons 3.658812e-01   p_joint 3.011737e-03

Joint ci ratio: 4.875125e-02	ci left: 2.938706e-03	ci right 3.086009e-03	k: 6445	n:2140000
Cons ci ratio: 3.527505e-03	ci left: 3.652639e-01	ci right 3.665551e-01	k: 783046	n:2140000
KS ci ratio: 1.025561e-01	ci left: 6.472480e-04	ci right 7.176660e-04	k: 1459	n:2140000
GPR141   2140000 perm   2103 sec   (1018 perm/sec)   p_kst 6.817757e-04   p_cons 3.659093e-01   p_joint 3.011682e-03

Joint ci ratio: 4.864950e-02	ci left: 2.937443e-03	ci right 3.084366e-03	k: 6472	n:2150000
Cons ci ratio: 3.519056e-03	ci left: 3.652965e-01	ci right 3.665847e-01	k: 786772	n:2150000
KS ci ratio: 1.023111e-01	ci left: 6.474100e-04	ci right 7.176672e-04	k: 1466	n:2150000
GPR141   2150000 perm   2120 sec   (1014 perm/sec)   p_kst 6.818605e-04   p_cons 3.659405e-01   p_joint 3.010233e-03

Joint ci ratio: 5.137188e-02	ci left: 2.619351e-03	ci right 2.757913e-03	k: 5806	n:2160000
Cons ci ratio: 3.510640e-03	ci left: 3.653326e-01	ci right 3.666178e-01	k: 790506	n:2160000
KS ci ratio: 1.019641e-01	ci left: 6.489241e-04	ci right 7.190925e-04	k: 1476	n:2160000
GPR141   2160000 perm   2138 sec   (1010 perm/sec)   p_kst 6.833333e-04   p_cons 3.659750e-01   p_joint 2.687963e-03

Joint ci ratio: 5.127490e-02	ci left: 2.617289e-03	ci right 2.755472e-03	k: 5828	n:2170000
Cons ci ratio: 3.502513e-03	ci left: 3.653378e-01	ci right 3.666201e-01	k: 794174	n:2170000
KS ci ratio: 1.017920e-01	ci left: 6.481791e-04	ci right 7.181415e-04	k: 1481	n:2170000
GPR141   2170000 perm   2156 sec   (1006 perm/sec)   p_kst 6.824885e-04   p_cons 3.659788e-01   p_joint 2.685714e-03

Joint ci ratio: 5.116094e-02	ci left: 2.617057e-03	ci right 2.754912e-03	k: 5854	n:2180000
Cons ci ratio: 3.494739e-03	ci left: 3.653036e-01	ci right 3.665830e-01	k: 797756	n:2180000
KS ci ratio: 1.015183e-01	ci left: 6.487822e-04	ci right 7.186103e-04	k: 1489	n:2180000
GPR141   2180000 perm   2174 sec   (1003 perm/sec)   p_kst 6.830275e-04   p_cons 3.659431e-01   p_joint 2.685321e-03

Joint ci ratio: 5.106515e-02	ci left: 2.615024e-03	ci right 2.752507e-03	k: 5876	n:2190000
Cons ci ratio: 3.486680e-03	ci left: 3.653145e-01	ci right 3.665909e-01	k: 801436	n:2190000
KS ci ratio: 1.011793e-01	ci left: 6.502702e-04	ci right 7.200108e-04	k: 1499	n:2190000
GPR141   2190000 perm   2191 sec   (999 perm/sec)   p_kst 6.844749e-04   p_cons 3.659525e-01   p_joint 2.683105e-03

Joint ci ratio: 5.092231e-02	ci left: 2.617946e-03	ci right 2.755186e-03	k: 5909	n:2200000
Cons ci ratio: 3.478531e-03	ci left: 3.653448e-01	ci right 3.666183e-01	k: 805159	n:2200000
KS ci ratio: 1.009105e-01	ci left: 6.508589e-04	ci right 7.204663e-04	k: 1507	n:2200000
GPR141   2200000 perm   2209 sec   (996 perm/sec)   p_kst 6.850000e-04   p_cons 3.659814e-01   p_joint 2.685909e-03

Joint ci ratio: 5.079781e-02	ci left: 2.619056e-03	ci right 2.756008e-03	k: 5938	n:2210000
Cons ci ratio: 3.470482e-03	ci left: 3.653689e-01	ci right 3.666396e-01	k: 808869	n:2210000
KS ci ratio: 1.006771e-01	ci left: 6.510015e-04	ci right 7.204535e-04	k: 1514	n:2210000
GPR141   2210000 perm   2227 sec   (992 perm/sec)   p_kst 6.850679e-04   p_cons 3.660041e-01   p_joint 2.686878e-03

Joint ci ratio: 5.071684e-02	ci left: 2.615708e-03	ci right 2.752261e-03	k: 5957	n:2220000
Cons ci ratio: 3.463124e-03	ci left: 3.653078e-01	ci right 3.665755e-01	k: 812390	n:2220000
KS ci ratio: 1.005445e-01	ci left: 6.498255e-04	ci right 7.190553e-04	k: 1518	n:2220000
GPR141   2220000 perm   2245 sec   (989 perm/sec)   p_kst 6.837838e-04   p_cons 3.659414e-01   p_joint 2.683333e-03

Joint ci ratio: 5.058536e-02	ci left: 2.617704e-03	ci right 2.753996e-03	k: 5988	n:2230000
Cons ci ratio: 3.455018e-03	ci left: 3.653538e-01	ci right 3.666187e-01	k: 816149	n:2230000
KS ci ratio: 1.002151e-01	ci left: 6.512832e-04	ci right 7.204277e-04	k: 1528	n:2230000
GPR141   2230000 perm   2264 sec   (985 perm/sec)   p_kst 6.852018e-04   p_cons 3.659861e-01   p_joint 2.685202e-03

Joint ci ratio: 5.060685e-02	ci left: 2.603813e-03	ci right 2.739442e-03	k: 5983	n:2240000
Cons ci ratio: 3.447333e-03	ci left: 3.653504e-01	ci right 3.666125e-01	k: 819798	n:2240000
KS ci ratio: 1.000517e-01	ci left: 6.505519e-04	ci right 7.194995e-04	k: 1533	n:2240000
GPR141   2240000 perm   2283 sec   (981 perm/sec)   p_kst 6.843750e-04   p_cons 3.659812e-01   p_joint 2.670982e-03

Joint ci ratio: 5.044680e-02	ci left: 2.608916e-03	ci right 2.744369e-03	k: 6021	n:2250000
Cons ci ratio: 3.439894e-03	ci left: 3.653208e-01	ci right 3.665800e-01	k: 823388	n:2250000
KS ci ratio: 9.975945e-02	ci left: 6.515606e-04	ci right 7.204017e-04	k: 1542	n:2250000
GPR141   2250000 perm   2301 sec   (978 perm/sec)   p_kst 6.853333e-04   p_cons 3.659502e-01   p_joint 2.676000e-03

Outputting figure to mutsig2_images.part000000000073/GPR141.3_922_2250000_0.00068533_0.36595_0.002676.png
                gene_name: GPR141
               theta_stop: 0.100 
                    nperm: 2250000 
                     p_ks: 0.00069 
        ci_ks_bounds_left: 0.00065 
       ci_ks_bounds_right: 0.00072 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.0027 
     ci_joint_bounds_left: 0.0026 
    ci_joint_bounds_right: 0.0027 

Current progress: 63 percent done.
GPR155
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.743326e-02	ci left: 3.085789e-01	ci right 3.269274e-01	k: 3177	n:10000
KS ci ratio: 2.748407e-02	ci left: 6.610882e-01	ci right 6.796124e-01	k: 6704	n:10000
GPR155   10000 perm   2 sec   (5698 perm/sec)   p_kst 6.704000e-01   p_cons 3.177000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR155.3_2673_10000_0.6704_0.3177_1.png
                gene_name: GPR155
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
GPR160
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.390452e-02	ci left: 5.622325e-01	ci right 5.817255e-01	k: 5720	n:10000
Cons ci ratio: 6.424362e-02	ci left: 2.625040e-01	ci right 2.800294e-01	k: 2712	n:10000
KS ci ratio: 1.365768e-02	ci left: 8.855472e-01	ci right 8.978236e-01	k: 8918	n:10000
GPR160   10000 perm   2 sec   (6465 perm/sec)   p_kst 8.918000e-01   p_cons 2.712000e-01   p_joint 5.720000e-01

Outputting figure to mutsig2_images.part000000000073/GPR160.3_1021_10000_0.8918_0.2712_0.572.png
                gene_name: GPR160
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 67 percent done.
GPR174
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.570976e-02	ci left: 2.033338e-01	ci right 2.194347e-01	k: 2113	n:10000
Cons ci ratio: 2.040185e-01	ci left: 3.195912e-02	ci right 3.931460e-02	k: 355	n:10000
KS ci ratio: 7.884357e-03	ci left: 9.572282e-01	ci right 9.649002e-01	k: 9612	n:10000
GPR174   10000 perm   2 sec   (6637 perm/sec)   p_kst 9.612000e-01   p_cons 3.550000e-02   p_joint 2.113000e-01

Joint ci ratio: 5.754901e-02	ci left: 1.828529e-01	ci right 1.937378e-01	k: 3765	n:20000
Cons ci ratio: 1.506346e-01	ci left: 3.027829e-02	ci right 3.525876e-02	k: 654	n:20000
KS ci ratio: 5.378960e-03	ci left: 9.610663e-01	ci right 9.662978e-01	k: 19275	n:20000
GPR174   20000 perm   3 sec   (5905 perm/sec)   p_kst 9.637500e-01   p_cons 3.270000e-02   p_joint 1.882500e-01

Joint ci ratio: 4.942486e-02	ci left: 1.690320e-01	ci right 1.776314e-01	k: 5199	n:30000
Cons ci ratio: 1.223832e-01	ci left: 3.103958e-02	ci right 3.511817e-02	k: 991	n:30000
KS ci ratio: 4.354284e-03	ci left: 9.621726e-01	ci right 9.664035e-01	k: 28930	n:30000
GPR174   30000 perm   5 sec   (5610 perm/sec)   p_kst 9.643333e-01   p_cons 3.303333e-02   p_joint 1.733000e-01

Joint ci ratio: 4.819318e-02	ci left: 1.384940e-01	ci right 1.453581e-01	k: 5676	n:40000
Cons ci ratio: 1.065580e-01	ci left: 3.097859e-02	ci right 3.448967e-02	k: 1308	n:40000
KS ci ratio: 3.807816e-03	ci left: 9.617694e-01	ci right 9.654629e-01	k: 38546	n:40000
GPR174   40000 perm   7 sec   (5445 perm/sec)   p_kst 9.636500e-01   p_cons 3.270000e-02   p_joint 1.419000e-01

Joint ci ratio: 4.825802e-02	ci left: 1.137596e-01	ci right 1.194050e-01	k: 5828	n:50000
Cons ci ratio: 9.595467e-02	ci left: 3.074801e-02	ci right 3.386660e-02	k: 1614	n:50000
KS ci ratio: 3.383691e-03	ci left: 9.624321e-01	ci right 9.657137e-01	k: 48205	n:50000
GPR174   50000 perm   9 sec   (5324 perm/sec)   p_kst 9.641000e-01   p_cons 3.228000e-02   p_joint 1.165600e-01

Outputting figure to mutsig2_images.part000000000073/GPR174.3_1006_50000_0.9641_0.03228_0.11656.png
                gene_name: GPR174
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 68 percent done.
GPATCH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.084306e-02	ci left: 7.713448e-01	ci right 7.876920e-01	k: 7796	n:10000
Cons ci ratio: 5.449446e-02	ci left: 3.316070e-01	ci right 3.502858e-01	k: 3409	n:10000
KS ci ratio: 1.254905e-02	ci left: 9.012412e-01	ci right 9.127205e-01	k: 9071	n:10000
GPATCH3   10000 perm   2 sec   (6609 perm/sec)   p_kst 9.071000e-01   p_cons 3.409000e-01   p_joint 7.796000e-01

Outputting figure to mutsig2_images.part000000000073/GPATCH3.2_1606_10000_0.9071_0.3409_0.7796.png
                gene_name: GPATCH3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 70 percent done.
GPBAR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.453334e-02	ci left: 8.726519e-01	ci right 8.855263e-01	k: 8792	n:10000
Cons ci ratio: 4.917392e-03	ci left: 9.819904e-01	ci right 9.869215e-01	k: 9846	n:10000
KS ci ratio: 2.276448e-02	ci left: 7.391670e-01	ci right 7.562885e-01	k: 7478	n:10000
GPBAR1   10000 perm   1 sec   (6833 perm/sec)   p_kst 7.478000e-01   p_cons 9.846000e-01   p_joint 8.792000e-01

Outputting figure to mutsig2_images.part000000000073/GPBAR1.2_996_10000_0.7478_0.9846_0.8792.png
                gene_name: GPBAR1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 72 percent done.
GPBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.588410e-02	ci left: 8.520244e-01	ci right 8.657658e-01	k: 8590	n:10000
Cons ci ratio: 2.829005e-02	ci left: 6.481042e-01	ci right 6.668040e-01	k: 6575	n:10000
KS ci ratio: 6.929979e-02	ci left: 2.339280e-01	ci right 2.508223e-01	k: 2423	n:10000
GPBP1   10000 perm   1 sec   (6849 perm/sec)   p_kst 2.423000e-01   p_cons 6.575000e-01   p_joint 8.590000e-01

Outputting figure to mutsig2_images.part000000000073/GPBP1.2_1487_10000_0.2423_0.6575_0.859.png
                gene_name: GPBP1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 73 percent done.
GPER
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.405090e-02	ci left: 7.176482e-01	ci right 7.352197e-01	k: 7265	n:10000
KS ci ratio: 3.029653e-02	ci left: 6.164309e-01	ci right 6.354957e-01	k: 6260	n:10000
GPER   10000 perm   1 sec   (7074 perm/sec)   p_kst 6.260000e-01   p_cons 7.265000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPER.2_1132_10000_0.626_0.7265_1.png
                gene_name: GPER
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
GPI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.590188e-03	ci left: 9.692095e-01	ci right 9.757113e-01	k: 9726	n:10000
Cons ci ratio: 1.522255e-02	ci left: 8.622295e-01	ci right 8.755548e-01	k: 8690	n:10000
KS ci ratio: 3.599350e-02	ci left: 5.326745e-01	ci right 5.523008e-01	k: 5425	n:10000
GPI   10000 perm   2 sec   (6265 perm/sec)   p_kst 5.425000e-01   p_cons 8.690000e-01   p_joint 9.726000e-01

Outputting figure to mutsig2_images.part000000000073/GPI.2_1870_10000_0.5425_0.869_0.9726.png
                gene_name: GPI
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 77 percent done.
GPN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.403624e-02	ci left: 5.603277e-01	ci right 5.798314e-01	k: 5701	n:10000
Cons ci ratio: 7.439508e-02	ci left: 2.091515e-01	ci right 2.254135e-01	k: 2172	n:10000
KS ci ratio: 4.150350e-02	ci left: 4.615758e-01	ci right 4.812409e-01	k: 4714	n:10000
GPN3   10000 perm   1 sec   (6882 perm/sec)   p_kst 4.714000e-01   p_cons 2.172000e-01   p_joint 5.701000e-01

Outputting figure to mutsig2_images.part000000000073/GPN3.2_1086_10000_0.4714_0.2172_0.5701.png
                gene_name: GPN3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 78 percent done.
GPNMB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.260658e-02	ci left: 5.812885e-01	ci right 6.006585e-01	k: 5910	n:10000
Cons ci ratio: 4.140372e-02	ci left: 4.627741e-01	ci right 4.824419e-01	k: 4726	n:10000
KS ci ratio: 6.844278e-02	ci left: 2.384731e-01	ci right 2.554745e-01	k: 2469	n:10000
GPNMB   10000 perm   2 sec   (6410 perm/sec)   p_kst 2.469000e-01   p_cons 4.726000e-01   p_joint 5.910000e-01

Outputting figure to mutsig2_images.part000000000073/GPNMB.2_1763_10000_0.2469_0.4726_0.591.png
                gene_name: GPNMB
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 80 percent done.
GPR109A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.494759e-02	ci left: 5.472988e-01	ci right 5.668679e-01	k: 5571	n:10000
KS ci ratio: 8.886211e-03	ci left: 9.467940e-01	ci right 9.553408e-01	k: 9512	n:10000
GPR109A   10000 perm   1 sec   (6769 perm/sec)   p_kst 9.512000e-01   p_cons 5.571000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR109A.2_1096_10000_0.9512_0.5571_1.png
                gene_name: GPR109A
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
GPR110
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.507969e-02	ci left: 2.060944e-01	ci right 2.222724e-01	k: 2141	n:10000
Cons ci ratio: 8.028430e-02	ci left: 1.847145e-01	ci right 2.002650e-01	k: 1924	n:10000
KS ci ratio: 2.777056e-02	ci left: 6.564574e-01	ci right 6.750460e-01	k: 6658	n:10000
GPR110   10000 perm   2 sec   (5903 perm/sec)   p_kst 6.658000e-01   p_cons 1.924000e-01   p_joint 2.141000e-01

Outputting figure to mutsig2_images.part000000000073/GPR110.2_2839_10000_0.6658_0.1924_0.2141.png
                gene_name: GPR110
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 83 percent done.
GPR111
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.256318e-02	ci left: 3.479005e-01	ci right 3.667827e-01	k: 3573	n:10000
Cons ci ratio: 3.593554e-02	ci left: 5.334756e-01	ci right 5.530992e-01	k: 5433	n:10000
KS ci ratio: 9.888455e-02	ci left: 1.290445e-01	ci right 1.425684e-01	k: 1357	n:10000
GPR111   10000 perm   2 sec   (6347 perm/sec)   p_kst 1.357000e-01   p_cons 5.433000e-01   p_joint 3.573000e-01

Outputting figure to mutsig2_images.part000000000073/GPR111.2_1957_10000_0.1357_0.5433_0.3573.png
                gene_name: GPR111
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 85 percent done.
GPR114
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.148235e-02	ci left: 3.574437e-01	ci right 3.764339e-01	k: 3669	n:10000
Cons ci ratio: 4.326865e-02	ci left: 4.409135e-01	ci right 4.605152e-01	k: 4507	n:10000
KS ci ratio: 1.149936e-01	ci left: 9.808295e-02	ci right 1.101488e-01	k: 1040	n:10000
GPR114   10000 perm   1 sec   (6789 perm/sec)   p_kst 1.040000e-01   p_cons 4.507000e-01   p_joint 3.669000e-01

Joint ci ratio: 2.709981e-02	ci left: 5.042960e-01	ci right 5.182007e-01	k: 10225	n:20000
Cons ci ratio: 2.916201e-02	ci left: 4.676585e-01	ci right 4.815488e-01	k: 9492	n:20000
KS ci ratio: 8.340923e-02	ci left: 9.528684e-02	ci right 1.036300e-01	k: 1988	n:20000
GPR114   20000 perm   3 sec   (6003 perm/sec)   p_kst 9.940000e-02   p_cons 4.746000e-01   p_joint 5.112500e-01

Outputting figure to mutsig2_images.part000000000073/GPR114.2_1631_20000_0.0994_0.4746_0.51125.png
                gene_name: GPR114
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 87 percent done.
GPR119
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.950272e-02	ci left: 7.936464e-01	ci right 8.093775e-01	k: 8016	n:10000
Cons ci ratio: 2.960819e-02	ci left: 6.271848e-01	ci right 6.461355e-01	k: 6367	n:10000
KS ci ratio: 2.819591e-02	ci left: 6.496136e-01	ci right 6.682937e-01	k: 6590	n:10000
GPR119   10000 perm   1 sec   (6878 perm/sec)   p_kst 6.590000e-01   p_cons 6.367000e-01   p_joint 8.016000e-01

Outputting figure to mutsig2_images.part000000000073/GPR119.2_1012_10000_0.659_0.6367_0.8016.png
                gene_name: GPR119
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 88 percent done.
GPR143
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.279128e-02	ci left: 4.464018e-01	ci right 4.660237e-01	k: 4562	n:10000
Cons ci ratio: 8.809519e-03	ci left: 9.476267e-01	ci right 9.561076e-01	k: 9520	n:10000
KS ci ratio: 9.731480e-02	ci left: 1.327651e-01	ci right 1.464456e-01	k: 1395	n:10000
GPR143   10000 perm   1 sec   (6680 perm/sec)   p_kst 1.395000e-01   p_cons 9.520000e-01   p_joint 4.562000e-01

Outputting figure to mutsig2_images.part000000000073/GPR143.2_1251_10000_0.1395_0.952_0.4562.png
                gene_name: GPR143
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 90 percent done.
GPR148
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.586275e-02	ci left: 6.875840e-01	ci right 7.057013e-01	k: 6967	n:10000
KS ci ratio: 8.905301e-03	ci left: 9.465858e-01	ci right 9.551491e-01	k: 9510	n:10000
GPR148   10000 perm   1 sec   (6723 perm/sec)   p_kst 9.510000e-01   p_cons 6.967000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR148.2_1048_10000_0.951_0.6967_1.png
                gene_name: GPR148
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
GPR153
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.529596e-02	ci left: 8.611064e-01	ci right 8.744786e-01	k: 8679	n:10000
Cons ci ratio: 1.330863e-02	ci left: 8.905689e-01	ci right 9.025990e-01	k: 8967	n:10000
KS ci ratio: 1.544678e-01	ci left: 5.580941e-02	ci right 6.524862e-02	k: 604	n:10000
GPR153   10000 perm   2 sec   (6628 perm/sec)   p_kst 6.040000e-02   p_cons 8.967000e-01   p_joint 8.679000e-01

Joint ci ratio: 5.883244e-02	ci left: 1.762787e-01	ci right 1.870140e-01	k: 3632	n:20000
Cons ci ratio: 1.021987e-02	ci left: 8.757717e-01	ci right 8.848175e-01	k: 17607	n:20000
KS ci ratio: 1.086552e-01	ci left: 5.777083e-02	ci right 6.445747e-02	k: 1221	n:20000
GPR153   20000 perm   3 sec   (5880 perm/sec)   p_kst 6.105000e-02   p_cons 8.803500e-01   p_joint 1.816000e-01

Joint ci ratio: 2.978941e-02	ci left: 3.604791e-01	ci right 3.714135e-01	k: 10978	n:30000
Cons ci ratio: 8.285353e-03	ci left: 8.781268e-01	ci right 8.854657e-01	k: 26455	n:30000
KS ci ratio: 8.900205e-02	ci left: 5.802398e-02	ci right 6.346147e-02	k: 1821	n:30000
GPR153   30000 perm   5 sec   (5579 perm/sec)   p_kst 6.070000e-02   p_cons 8.818333e-01   p_joint 3.659333e-01

Outputting figure to mutsig2_images.part000000000073/GPR153.2_1850_30000_0.0607_0.88183_0.36593.png
                gene_name: GPR153
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 93 percent done.
GPR162
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.610910e-02	ci left: 3.187002e-01	ci right 3.372001e-01	k: 3279	n:10000
Cons ci ratio: 2.180661e-01	ci left: 2.787955e-02	ci right 3.479702e-02	k: 312	n:10000
KS ci ratio: 5.210859e-02	ci left: 3.518763e-01	ci right 3.708045e-01	k: 3613	n:10000
GPR162   10000 perm   2 sec   (6447 perm/sec)   p_kst 3.613000e-01   p_cons 3.120000e-02   p_joint 3.279000e-01

Joint ci ratio: 4.943354e-02	ci left: 2.332515e-01	ci right 2.451244e-01	k: 4783	n:20000
Cons ci ratio: 1.773270e-01	ci left: 2.173197e-02	ci right 2.600799e-02	k: 476	n:20000
KS ci ratio: 3.705064e-02	ci left: 3.521485e-01	ci right 3.654926e-01	k: 7176	n:20000
GPR162   20000 perm   3 sec   (5743 perm/sec)   p_kst 3.588000e-01   p_cons 2.380000e-02   p_joint 2.391500e-01

Joint ci ratio: 3.471980e-02	ci left: 2.929933e-01	ci right 3.033792e-01	k: 8945	n:30000
Cons ci ratio: 1.452567e-01	ci left: 2.197614e-02	ci right 2.545027e-02	k: 710	n:30000
KS ci ratio: 3.009564e-02	ci left: 3.557614e-01	ci right 3.666655e-01	k: 10836	n:30000
GPR162   30000 perm   5 sec   (5461 perm/sec)   p_kst 3.612000e-01   p_cons 2.366667e-02   p_joint 2.981667e-01

Joint ci ratio: 3.189618e-02	ci left: 2.697078e-01	ci right 2.784750e-01	k: 10963	n:40000
Cons ci ratio: 1.261376e-01	ci left: 2.208610e-02	ci right 2.508362e-02	k: 942	n:40000
KS ci ratio: 2.609938e-02	ci left: 3.558672e-01	ci right 3.653030e-01	k: 14423	n:40000
GPR162   40000 perm   8 sec   (5276 perm/sec)   p_kst 3.605750e-01   p_cons 2.355000e-02   p_joint 2.740750e-01

Joint ci ratio: 2.455504e-02	ci left: 3.334545e-01	ci right 3.417643e-01	k: 16880	n:50000
Cons ci ratio: 1.139020e-01	ci left: 2.182046e-02	ci right 2.447530e-02	k: 1156	n:50000
KS ci ratio: 2.336831e-02	ci left: 3.558907e-01	ci right 3.643256e-01	k: 18005	n:50000
GPR162   50000 perm   10 sec   (5132 perm/sec)   p_kst 3.601000e-01   p_cons 2.312000e-02   p_joint 3.376000e-01

Joint ci ratio: 2.147821e-02	ci left: 3.531318e-01	ci right 3.608154e-01	k: 21418	n:60000
Cons ci ratio: 1.040701e-01	ci left: 2.189654e-02	ci right 2.431656e-02	k: 1385	n:60000
KS ci ratio: 2.136329e-02	ci left: 3.555925e-01	ci right 3.632878e-01	k: 21566	n:60000
GPR162   60000 perm   12 sec   (5012 perm/sec)   p_kst 3.594333e-01   p_cons 2.308333e-02   p_joint 3.569667e-01

Joint ci ratio: 2.819978e-02	ci left: 2.132689e-01	ci right 2.193832e-01	k: 15142	n:70000
Cons ci ratio: 9.665670e-02	ci left: 2.184639e-02	ci right 2.407911e-02	k: 1606	n:70000
KS ci ratio: 1.980344e-02	ci left: 3.553026e-01	ci right 3.624234e-01	k: 25120	n:70000
GPR162   70000 perm   14 sec   (4898 perm/sec)   p_kst 3.588571e-01   p_cons 2.294286e-02   p_joint 2.163143e-01

Outputting figure to mutsig2_images.part000000000073/GPR162.2_1802_70000_0.35886_0.022943_0.21631.png
                gene_name: GPR162
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 95 percent done.
GPR173
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.271914e-02	ci left: 2.720070e-01	ci right 2.897208e-01	k: 2808	n:10000
Cons ci ratio: 3.062734e-02	ci left: 6.113069e-01	ci right 6.304227e-01	k: 6209	n:10000
KS ci ratio: 8.397822e-02	ci left: 1.713341e-01	ci right 1.864535e-01	k: 1788	n:10000
GPR173   10000 perm   1 sec   (6714 perm/sec)   p_kst 1.788000e-01   p_cons 6.209000e-01   p_joint 2.808000e-01

Outputting figure to mutsig2_images.part000000000073/GPR173.2_1126_10000_0.1788_0.6209_0.2808.png
                gene_name: GPR173
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 97 percent done.
GPR176
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.234563e-02	ci left: 4.515919e-01	ci right 4.712306e-01	k: 4614	n:10000
Cons ci ratio: 5.676458e-02	ci left: 3.136389e-01	ci right 3.320644e-01	k: 3228	n:10000
KS ci ratio: 4.619910e-02	ci left: 4.088062e-01	ci right 4.282413e-01	k: 4185	n:10000
GPR176   10000 perm   2 sec   (6413 perm/sec)   p_kst 4.185000e-01   p_cons 3.228000e-01   p_joint 4.614000e-01

Outputting figure to mutsig2_images.part000000000073/GPR176.2_1560_10000_0.4185_0.3228_0.4614.png
                gene_name: GPR176
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 98 percent done.
GPR18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.895557e-02	ci left: 8.026788e-01	ci right 8.181399e-01	k: 8105	n:10000
KS ci ratio: 5.530440e-02	ci left: 3.250533e-01	ci right 3.436433e-01	k: 3343	n:10000
GPR18   10000 perm   1 sec   (6678 perm/sec)   p_kst 3.343000e-01   p_cons 8.105000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000073/GPR18.2_1000_10000_0.3343_0.8105_1.png
                gene_name: GPR18
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000073
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 73 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1531>
Subject: Job 9893957: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1531>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000074> was used as the working directory.
Started at Sat Oct  6 00:10:08 2012
Results reported at Sat Oct  6 00:20:57 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000074.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000074.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 74  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000074.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    673.81 sec.
    Max Memory :      3632 MB
    Max Swap   :      5920 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
74
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 74
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 74: processing genes 6582 - 6671
Calculating significance of each gene.
Using projection method.
6582	GPR180	2.007237e-01
6583	GPR182	4.678330e-01
6584	GPR183	1.908247e-01
6585	GPR19	5.682721e-02
6586	GPR20	1
6587	GPR21	2.613881e-01
6588	GPR22	4.595702e-01
6589	GPR25	1
6590	GPR26	6.173443e-01
6591	GPR27	1
6592	GPR3	1
In gene GPR31 the following bins exceed PROBCAP:
    COAD-AA-A017	categ 6	N = 963     n = 1	mu =   2.63e-07
6593	GPR31	9.080796e-02
6594	GPR32	3.958081e-01
6595	GPR34	1.618957e-02
6596	GPR35	1
6597	GPR37	1.224735e-01
6598	GPR37L1	4.484385e-01
6599	GPR39	8.361135e-01
6600	GPR4	9.340049e-01
6601	GPR44	1
6602	GPR45	9.691330e-02
6603	GPR50	1.292915e-01
6604	GPR52	4.540188e-01
6605	GPR55	4.084460e-01
6606	GPR56	9.532668e-01
6607	GPR6	3.699374e-02
6608	GPR61	1.404053e-01
6609	GPR62	1
6610	GPR63	3.147226e-01
6611	GPR64	4.151186e-01
6612	GPR65	7.535414e-01
6613	GPR68	1
6614	GPR75	4.577773e-01
6615	GPR77	7.699159e-01
6616	GPR78	1
6617	GPR81	1
6618	GPR82	1
6619	GPR83	9.034871e-01
6620	GPR84	4.130881e-02
6621	GPR85	6.501558e-01
6622	GPR87	1.084788e-02
6623	GPR88	8.584784e-01
6624	GPR89A	1
6625	GPR89B	2.863150e-01
6626	GPR97	2.500250e-01
6627	GPR98	8.516973e-01
6628	GPRASP1	2.811664e-01
6629	GPRASP2	5.493393e-01
6630	GPRC5A	5.517377e-01
6631	GPRC5B	5.566014e-01
6632	GPRC5C	5.851013e-01
6633	GPRC5D	8.498347e-01
6634	GPRC6A	3.269063e-01
6635	GPRIN1	9.378899e-01
6636	GPRIN2	1
6637	GPRIN3	4.239603e-01
6638	GPS1	1
6639	GPS2	9.916666e-02
6640	GPSM1	1
6641	GPSM2	7.612346e-01
6642	GPSM3	4.275490e-01
6643	GPT	1
6644	GPT2	6.903297e-01
6645	GPX1	4.161063e-01
6646	GPX2	1.006003e-01
6647	GPX3	7.448581e-02
6648	GPX4	1
6649	GPX5	2.532440e-02
6650	GPX6	7.914117e-02
6651	GPX7	1
6652	GPX8	6.056152e-01
6653	GRAMD1A	9.560675e-01
6654	GRAMD1B	4.814943e-01
6655	GRAMD1C	3.980653e-01
6656	GRAMD2	1.544204e-01
6657	GRAMD3	3.323241e-01
6658	GRAMD4	1
6659	GRAP	1
6660	GRAP2	3.957368e-01
6661	GRASP	5.951860e-01
6662	GRB10	1
6663	GRB14	1.284167e-01
6664	GRB2	1.678790e-01
6665	GRB7	9.667060e-01
6666	GREB1	8.359225e-01
6667	GREM1	6.892741e-01
6668	GREM2	1
6669	GRHL1	9.496865e-01
6670	GRHL2	6.894034e-01
6671	GRHL3	9.387436e-01
Done

Running MutSig 2:
Scatter job 74: processing genes 6582 - 6671
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GPR98
Processing conservation and coverage...
51% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.003189e-02	ci left: 6.205509e-01	ci right 6.395732e-01	k: 6301	n:10000
Cons ci ratio: 3.398073e-02	ci left: 5.611297e-01	ci right 5.806290e-01	k: 5709	n:10000
KS ci ratio: 4.458556e-02	ci left: 4.261509e-01	ci right 4.456865e-01	k: 4359	n:10000
GPR98   10000 perm   7 sec   (1461 perm/sec)   p_kst 4.359000e-01   p_cons 5.709000e-01   p_joint 6.301000e-01

Outputting figure to mutsig2_images.part000000000074/GPR98.37_19281_10000_0.4359_0.5709_0.6301.png
                gene_name: GPR98
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 2 percent done.
GREB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.413353e-02	ci left: 5.589243e-01	ci right 5.784357e-01	k: 5687	n:10000
KS ci ratio: 2.316878e-02	ci left: 7.323953e-01	ci right 7.496640e-01	k: 7411	n:10000
GREB1   10000 perm   3 sec   (3022 perm/sec)   p_kst 7.411000e-01   p_cons 5.687000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GREB1.12_6086_10000_0.7411_0.5687_1.png
                gene_name: GREB1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
GPRASP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.045589e-02	ci left: 1.509016e-01	ci right 1.652982e-01	k: 1580	n:10000
Cons ci ratio: 4.348773e-02	ci left: 4.384192e-01	ci right 4.580110e-01	k: 4482	n:10000
KS ci ratio: 1.295265e-01	ci left: 7.844097e-02	ci right 8.940285e-02	k: 838	n:10000
GPRASP1   10000 perm   3 sec   (3956 perm/sec)   p_kst 8.380000e-02   p_cons 4.482000e-01   p_joint 1.580000e-01

Joint ci ratio: 6.218503e-02	ci left: 1.605709e-01	ci right 1.709264e-01	k: 3314	n:20000
Cons ci ratio: 3.116991e-02	ci left: 4.346519e-01	ci right 4.484651e-01	k: 8831	n:20000
KS ci ratio: 9.186014e-02	ci left: 7.960393e-02	ci right 8.731768e-02	k: 1668	n:20000
GPRASP1   20000 perm   6 sec   (3629 perm/sec)   p_kst 8.340000e-02   p_cons 4.415500e-01   p_joint 1.657000e-01

Outputting figure to mutsig2_images.part000000000074/GPRASP1.10_4192_20000_0.0834_0.44155_0.1657.png
                gene_name: GPRASP1
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 6 percent done.
GPRC6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.177704e-02	ci left: 5.937330e-01	ci right 6.130067e-01	k: 6034	n:10000
KS ci ratio: 2.942289e-02	ci left: 6.301003e-01	ci right 6.490183e-01	k: 6396	n:10000
GPRC6A   10000 perm   2 sec   (4202 perm/sec)   p_kst 6.396000e-01   p_cons 6.034000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPRC6A.8_2805_10000_0.6396_0.6034_1.png
                gene_name: GPRC6A
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
GPR37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.308071e-01	ci left: 7.698582e-02	ci right 8.785890e-02	k: 823	n:10000
Cons ci ratio: 2.859839e-02	ci left: 6.431744e-01	ci right 6.619367e-01	k: 6526	n:10000
KS ci ratio: 1.568265e-01	ci left: 5.417192e-02	ci right 6.348715e-02	k: 587	n:10000
GPR37   10000 perm   2 sec   (5006 perm/sec)   p_kst 5.870000e-02   p_cons 6.526000e-01   p_joint 8.230000e-02

Joint ci ratio: 7.785220e-02	ci left: 1.081032e-01	ci right 1.169098e-01	k: 2249	n:20000
Cons ci ratio: 2.023633e-02	ci left: 6.456530e-01	ci right 6.589027e-01	k: 13046	n:20000
KS ci ratio: 1.125835e-01	ci left: 5.392380e-02	ci right 6.040569e-02	k: 1142	n:20000
GPR37   20000 perm   4 sec   (4485 perm/sec)   p_kst 5.710000e-02   p_cons 6.523000e-01   p_joint 1.124500e-01

Joint ci ratio: 7.115665e-02	ci left: 8.858839e-02	ci right 9.515756e-02	k: 2755	n:30000
Cons ci ratio: 1.682043e-02	ci left: 6.387186e-01	ci right 6.495868e-01	k: 19325	n:30000
KS ci ratio: 9.309663e-02	ci left: 5.319646e-02	ci right 5.842331e-02	k: 1673	n:30000
GPR37   30000 perm   7 sec   (4381 perm/sec)   p_kst 5.576667e-02   p_cons 6.441667e-01   p_joint 9.183333e-02

Outputting figure to mutsig2_images.part000000000074/GPR37.7_1850_30000_0.055767_0.64417_0.091833.png
                gene_name: GPR37
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.095 

Current progress: 10 percent done.
GPR45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.154515e-02	ci left: 7.595994e-01	ci right 7.762442e-01	k: 7680	n:10000
KS ci ratio: 1.824899e-02	ci left: 8.142578e-01	ci right 8.293542e-01	k: 8219	n:10000
GPR45   10000 perm   2 sec   (6061 perm/sec)   p_kst 8.219000e-01   p_cons 7.680000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR45.7_1123_10000_0.8219_0.768_1.png
                gene_name: GPR45
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
GPR34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.341096e-02	ci left: 1.733008e-01	ci right 1.884856e-01	k: 1808	n:10000
Cons ci ratio: 1.268230e-01	ci left: 8.164409e-02	ci right 9.279774e-02	k: 871	n:10000
KS ci ratio: 9.244324e-02	ci left: 1.453096e-01	ci right 1.594935e-01	k: 1523	n:10000
GPR34   10000 perm   2 sec   (5297 perm/sec)   p_kst 1.523000e-01   p_cons 8.710000e-02   p_joint 1.808000e-01

Joint ci ratio: 7.096984e-02	ci left: 1.276330e-01	ci right 1.370741e-01	k: 2646	n:20000
Cons ci ratio: 8.976383e-02	ci left: 8.312927e-02	ci right 9.099126e-02	k: 1740	n:20000
KS ci ratio: 6.657079e-02	ci left: 1.428092e-01	ci right 1.526934e-01	k: 2954	n:20000
GPR34   20000 perm   4 sec   (4480 perm/sec)   p_kst 1.477000e-01   p_cons 8.700000e-02   p_joint 1.323000e-01

Outputting figure to mutsig2_images.part000000000074/GPR34.6_1150_20000_0.1477_0.087_0.1323.png
                gene_name: GPR34
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 13 percent done.
GPR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.293953e-02	ci left: 8.957999e-01	ci right 9.075649e-01	k: 9018	n:10000
Cons ci ratio: 2.934000e-02	ci left: 6.314074e-01	ci right 6.503105e-01	k: 6409	n:10000
KS ci ratio: 2.292739e-02	ci left: 7.364378e-01	ci right 7.536193e-01	k: 7451	n:10000
GPR6   10000 perm   2 sec   (5053 perm/sec)   p_kst 7.451000e-01   p_cons 6.409000e-01   p_joint 9.018000e-01

Outputting figure to mutsig2_images.part000000000074/GPR6.6_1093_10000_0.7451_0.6409_0.9018.png
                gene_name: GPR6
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 15 percent done.
GPR64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.404485e-02	ci left: 7.177492e-01	ci right 7.353186e-01	k: 7266	n:10000
Cons ci ratio: 7.291787e-02	ci left: 2.159584e-01	ci right 2.324025e-01	k: 2241	n:10000
KS ci ratio: 1.624928e-02	ci left: 8.463146e-01	ci right 8.602789e-01	k: 8534	n:10000
GPR64   10000 perm   2 sec   (4276 perm/sec)   p_kst 8.534000e-01   p_cons 2.241000e-01   p_joint 7.266000e-01

Outputting figure to mutsig2_images.part000000000074/GPR64.6_3162_10000_0.8534_0.2241_0.7266.png
                gene_name: GPR64
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 17 percent done.
GPR84
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.488330e-02	ci left: 2.586449e-01	ci right 2.760908e-01	k: 2673	n:10000
Cons ci ratio: 6.466872e-02	ci left: 2.599312e-01	ci right 2.774037e-01	k: 2686	n:10000
KS ci ratio: 6.199738e-02	ci left: 2.766613e-01	ci right 2.944638e-01	k: 2855	n:10000
GPR84   10000 perm   2 sec   (4734 perm/sec)   p_kst 2.855000e-01   p_cons 2.686000e-01   p_joint 2.673000e-01

Outputting figure to mutsig2_images.part000000000074/GPR84.6_1195_10000_0.2855_0.2686_0.2673.png
                gene_name: GPR84
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 19 percent done.
GRB14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.367749e-01	ci left: 7.068651e-02	ci right 8.116213e-02	k: 758	n:10000
Cons ci ratio: 1.564030e-01	ci left: 5.446081e-02	ci right 6.379808e-02	k: 590	n:10000
KS ci ratio: 1.632674e-01	ci left: 5.003500e-02	ci right 5.902673e-02	k: 544	n:10000
GRB14   10000 perm   2 sec   (4971 perm/sec)   p_kst 5.440000e-02   p_cons 5.900000e-02   p_joint 7.580000e-02

Joint ci ratio: 9.755352e-02	ci left: 7.104451e-02	ci right 7.837971e-02	k: 1493	n:20000
Cons ci ratio: 1.055611e-01	ci left: 6.108537e-02	ci right 6.794190e-02	k: 1289	n:20000
KS ci ratio: 1.176937e-01	ci left: 4.944921e-02	ci right 5.568168e-02	k: 1050	n:20000
GRB14   20000 perm   4 sec   (4458 perm/sec)   p_kst 5.250000e-02   p_cons 6.445000e-02   p_joint 7.465000e-02

Joint ci ratio: 9.098567e-02	ci left: 5.560955e-02	ci right 6.094306e-02	k: 1747	n:30000
Cons ci ratio: 8.562464e-02	ci left: 6.249723e-02	ci right 6.812065e-02	k: 1958	n:30000
KS ci ratio: 9.447933e-02	ci left: 5.169714e-02	ci right 5.685627e-02	k: 1627	n:30000
GRB14   30000 perm   7 sec   (4256 perm/sec)   p_kst 5.423333e-02   p_cons 6.526667e-02   p_joint 5.823333e-02

Outputting figure to mutsig2_images.part000000000074/GRB14.6_1679_30000_0.054233_0.065267_0.058233.png
                gene_name: GRB14
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.061 

Current progress: 21 percent done.
GPR50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.246431e-01	ci left: 8.436377e-02	ci right 9.567638e-02	k: 899	n:10000
Cons ci ratio: 1.715849e-01	ci left: 4.533038e-02	ci right 5.393440e-02	k: 495	n:10000
KS ci ratio: 9.707249e-02	ci left: 1.333527e-01	ci right 1.470577e-01	k: 1401	n:10000
GPR50   10000 perm   2 sec   (5494 perm/sec)   p_kst 1.401000e-01   p_cons 4.950000e-02   p_joint 8.990000e-02

Joint ci ratio: 8.190841e-02	ci left: 9.852583e-02	ci right 1.069901e-01	k: 2054	n:20000
Cons ci ratio: 1.204400e-01	ci left: 4.726291e-02	ci right 5.336867e-02	k: 1005	n:20000
KS ci ratio: 6.770383e-02	ci left: 1.386683e-01	ci right 1.484355e-01	k: 2870	n:20000
GPR50   20000 perm   4 sec   (4899 perm/sec)   p_kst 1.435000e-01   p_cons 5.025000e-02   p_joint 1.027000e-01

Joint ci ratio: 8.728080e-02	ci left: 6.024376e-02	ci right 6.577457e-02	k: 1889	n:30000
Cons ci ratio: 1.006065e-01	ci left: 4.573839e-02	ci right 5.061626e-02	k: 1444	n:30000
KS ci ratio: 5.513459e-02	ci left: 1.402098e-01	ci right 1.481926e-01	k: 4325	n:30000
GPR50   30000 perm   6 sec   (4680 perm/sec)   p_kst 1.441667e-01   p_cons 4.813333e-02   p_joint 6.296667e-02

Joint ci ratio: 7.953565e-02	ci left: 5.496848e-02	ci right 5.954606e-02	k: 2289	n:40000
Cons ci ratio: 8.723918e-02	ci left: 4.594998e-02	ci right 5.016594e-02	k: 1921	n:40000
KS ci ratio: 4.789372e-02	ci left: 1.400036e-01	ci right 1.468983e-01	k: 5737	n:40000
GPR50   40000 perm   9 sec   (4532 perm/sec)   p_kst 1.434250e-01   p_cons 4.802500e-02   p_joint 5.722500e-02

Outputting figure to mutsig2_images.part000000000074/GPR50.5_1862_40000_0.14342_0.048025_0.057225.png
                gene_name: GPR50
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.060 

Current progress: 23 percent done.
GPR87
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.994475e-02	ci left: 3.715671e-01	ci right 3.907022e-01	k: 3811	n:10000
Cons ci ratio: 1.018103e-01	ci left: 1.224889e-01	ci right 1.357280e-01	k: 1290	n:10000
KS ci ratio: 5.662210e-02	ci left: 3.147305e-01	ci right 3.331722e-01	k: 3239	n:10000
GPR87   10000 perm   2 sec   (4590 perm/sec)   p_kst 3.239000e-01   p_cons 1.290000e-01   p_joint 3.811000e-01

Joint ci ratio: 4.836426e-02	ci left: 2.412335e-01	ci right 2.532401e-01	k: 4944	n:20000
Cons ci ratio: 7.372326e-02	ci left: 1.192654e-01	ci right 1.284443e-01	k: 2476	n:20000
KS ci ratio: 4.022142e-02	ci left: 3.154760e-01	ci right 3.284758e-01	k: 6439	n:20000
GPR87   20000 perm   5 sec   (4038 perm/sec)   p_kst 3.219500e-01   p_cons 1.238000e-01   p_joint 2.472000e-01

Outputting figure to mutsig2_images.part000000000074/GPR87.5_1085_20000_0.32195_0.1238_0.2472.png
                gene_name: GPR87
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 25 percent done.
GPR97
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.060676e-02	ci left: 4.724627e-01	ci right 4.921476e-01	k: 4823	n:10000
KS ci ratio: 1.183680e-02	ci left: 9.109059e-01	ci right 9.218501e-01	k: 9165	n:10000
GPR97   10000 perm   2 sec   (5149 perm/sec)   p_kst 9.165000e-01   p_cons 4.823000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR97.5_1698_10000_0.9165_0.4823_1.png
                gene_name: GPR97
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
GRAMD1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
Cons ci ratio: 1.772965e-02	ci left: 8.226953e-01	ci right 8.375119e-01	k: 8302	n:10000
KS ci ratio: 2.268173e-01	ci left: 2.570435e-02	ci right 3.237377e-02	k: 289	n:10000
GRAMD1B   10000 perm   2 sec   (4141 perm/sec)   p_kst 2.890000e-02   p_cons 8.302000e-01   p_joint 7.940000e-02

Joint ci ratio: 9.716747e-02	ci left: 7.158212e-02	ci right 7.894193e-02	k: 1504	n:20000
Cons ci ratio: 1.256289e-02	ci left: 8.243164e-01	ci right 8.347876e-01	k: 16592	n:20000
KS ci ratio: 1.619766e-01	ci left: 2.614160e-02	ci right 3.079684e-02	k: 568	n:20000
GRAMD1B   20000 perm   5 sec   (4122 perm/sec)   p_kst 2.840000e-02   p_cons 8.296000e-01   p_joint 7.520000e-02

Joint ci ratio: 9.251276e-02	ci left: 5.384851e-02	ci right 5.910446e-02	k: 1693	n:30000
Cons ci ratio: 1.023806e-02	ci left: 8.258355e-01	ci right 8.343672e-01	k: 24904	n:30000
KS ci ratio: 1.321349e-01	ci left: 2.661392e-02	ci right 3.041145e-02	k: 854	n:30000
GRAMD1B   30000 perm   7 sec   (4036 perm/sec)   p_kst 2.846667e-02   p_cons 8.301333e-01   p_joint 5.643333e-02

Joint ci ratio: 8.443822e-02	ci left: 4.896221e-02	ci right 5.330325e-02	k: 2044	n:40000
Cons ci ratio: 8.904317e-03	ci left: 8.251983e-01	ci right 8.326039e-01	k: 33157	n:40000
KS ci ratio: 1.146398e-01	ci left: 2.676963e-02	ci right 3.004931e-02	k: 1135	n:40000
GRAMD1B   40000 perm   10 sec   (3987 perm/sec)   p_kst 2.837500e-02   p_cons 8.289250e-01   p_joint 5.110000e-02

Joint ci ratio: 7.698311e-02	ci left: 4.739896e-02	ci right 5.121358e-02	k: 2464	n:50000
Cons ci ratio: 8.024387e-03	ci left: 8.234340e-01	ci right 8.300880e-01	k: 41339	n:50000
KS ci ratio: 1.001662e-01	ci left: 2.822938e-02	ci right 3.122555e-02	k: 1485	n:50000
GRAMD1B   50000 perm   13 sec   (3891 perm/sec)   p_kst 2.970000e-02   p_cons 8.267800e-01   p_joint 4.928000e-02

Joint ci ratio: 7.036337e-02	ci left: 4.745012e-02	ci right 5.092699e-02	k: 2950	n:60000
Cons ci ratio: 7.325126e-03	ci left: 8.237312e-01	ci right 8.298039e-01	k: 49607	n:60000
KS ci ratio: 9.107637e-02	ci left: 2.858429e-02	ci right 3.132810e-02	k: 1796	n:60000
GRAMD1B   60000 perm   16 sec   (3832 perm/sec)   p_kst 2.993333e-02   p_cons 8.267833e-01   p_joint 4.916667e-02

Outputting figure to mutsig2_images.part000000000074/GRAMD1B.5_2297_60000_0.029933_0.82678_0.049167.png
                gene_name: GRAMD1B
               theta_stop: 0.091 
                    nperm: 60000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.051 

Current progress: 29 percent done.
GRAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.655754e-02	ci left: 3.152266e-01	ci right 3.336757e-01	k: 3244	n:10000
Cons ci ratio: 2.329554e-02	ci left: 7.302734e-01	ci right 7.475872e-01	k: 7390	n:10000
KS ci ratio: 9.792711e-02	ci left: 1.312962e-01	ci right 1.449153e-01	k: 1380	n:10000
GRAP2   10000 perm   2 sec   (5589 perm/sec)   p_kst 1.380000e-01   p_cons 7.390000e-01   p_joint 3.244000e-01

Outputting figure to mutsig2_images.part000000000074/GRAP2.5_1021_10000_0.138_0.739_0.3244.png
                gene_name: GRAP2
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 31 percent done.
GPR183
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.783820e-02	ci left: 5.077523e-01	ci right 5.274374e-01	k: 5176	n:10000
Cons ci ratio: 6.682605e-02	ci left: 2.473694e-01	ci right 2.645729e-01	k: 2559	n:10000
KS ci ratio: 2.764588e-02	ci left: 6.584707e-01	ci right 6.770315e-01	k: 6678	n:10000
GPR183   10000 perm   2 sec   (5959 perm/sec)   p_kst 6.678000e-01   p_cons 2.559000e-01   p_joint 5.176000e-01

Outputting figure to mutsig2_images.part000000000074/GPR183.4_1090_10000_0.6678_0.2559_0.5176.png
                gene_name: GPR183
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 33 percent done.
GPR19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.606481e-02	ci left: 6.842576e-01	ci right 7.024297e-01	k: 6934	n:10000
Cons ci ratio: 9.008395e-02	ci left: 1.519811e-01	ci right 1.664180e-01	k: 1591	n:10000
KS ci ratio: 2.454149e-02	ci left: 7.094718e-01	ci right 7.272009e-01	k: 7184	n:10000
GPR19   10000 perm   2 sec   (5818 perm/sec)   p_kst 7.184000e-01   p_cons 1.591000e-01   p_joint 6.934000e-01

Outputting figure to mutsig2_images.part000000000074/GPR19.4_1252_10000_0.7184_0.1591_0.6934.png
                gene_name: GPR19
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 35 percent done.
GPR21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.596680e-02	ci left: 6.858703e-01	ci right 7.040160e-01	k: 6950	n:10000
Cons ci ratio: 1.298328e-02	ci left: 8.951842e-01	ci right 9.069810e-01	k: 9012	n:10000
KS ci ratio: 4.398338e-02	ci left: 4.328329e-01	ci right 4.524006e-01	k: 4426	n:10000
GPR21   10000 perm   2 sec   (5211 perm/sec)   p_kst 4.426000e-01   p_cons 9.012000e-01   p_joint 6.950000e-01

Outputting figure to mutsig2_images.part000000000074/GPR21.4_1054_10000_0.4426_0.9012_0.695.png
                gene_name: GPR21
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 37 percent done.
GPR61
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.663568e-01	ci left: 4.820949e-02	ci right 5.705342e-02	k: 525	n:10000
Cons ci ratio: 5.917331e-02	ci left: 2.958849e-01	ci right 3.140289e-01	k: 3049	n:10000
KS ci ratio: 3.209154e-01	ci left: 1.234131e-02	ci right 1.714746e-02	k: 146	n:10000
GPR61   10000 perm   2 sec   (5823 perm/sec)   p_kst 1.460000e-02   p_cons 3.049000e-01   p_joint 5.250000e-02

Joint ci ratio: 1.456506e-01	ci left: 3.239930e-02	ci right 3.753705e-02	k: 698	n:20000
Cons ci ratio: 4.219497e-02	ci left: 2.950448e-01	ci right 3.078130e-01	k: 6028	n:20000
KS ci ratio: 2.289106e-01	ci left: 1.279482e-02	ci right 1.614852e-02	k: 288	n:20000
GPR61   20000 perm   4 sec   (5133 perm/sec)   p_kst 1.440000e-02   p_cons 3.014000e-01   p_joint 3.490000e-02

Joint ci ratio: 9.899755e-02	ci left: 4.720273e-02	ci right 5.215161e-02	k: 1489	n:30000
Cons ci ratio: 3.435011e-02	ci left: 2.974707e-01	ci right 3.079009e-01	k: 9080	n:30000
KS ci ratio: 1.913204e-01	ci left: 1.247871e-02	ci right 1.515000e-02	k: 413	n:30000
GPR61   30000 perm   6 sec   (4877 perm/sec)   p_kst 1.376667e-02   p_cons 3.026667e-01   p_joint 4.963333e-02

Joint ci ratio: 1.043134e-01	ci left: 3.231849e-02	ci right 3.589956e-02	k: 1363	n:40000
Cons ci ratio: 2.978688e-02	ci left: 2.976271e-01	ci right 3.066516e-01	k: 12085	n:40000
KS ci ratio: 1.631599e-01	ci left: 1.306341e-02	ci right 1.540789e-02	k: 568	n:40000
GPR61   40000 perm   8 sec   (4727 perm/sec)   p_kst 1.420000e-02   p_cons 3.021250e-01   p_joint 3.407500e-02

Joint ci ratio: 9.883732e-02	ci left: 2.899053e-02	ci right 3.202430e-02	k: 1524	n:50000
Cons ci ratio: 2.662138e-02	ci left: 2.984355e-01	ci right 3.065075e-01	k: 15123	n:50000
KS ci ratio: 1.466954e-01	ci left: 1.304628e-02	ci right 1.513069e-02	k: 703	n:50000
GPR61   50000 perm   11 sec   (4605 perm/sec)   p_kst 1.406000e-02   p_cons 3.024600e-01   p_joint 3.048000e-02

Joint ci ratio: 9.475425e-02	ci left: 2.641769e-02	ci right 2.906159e-02	k: 1663	n:60000
Cons ci ratio: 2.424805e-02	ci left: 2.997227e-01	ci right 3.070963e-01	k: 18204	n:60000
KS ci ratio: 1.329438e-01	ci left: 1.333300e-02	ci right 1.524774e-02	k: 856	n:60000
GPR61   60000 perm   13 sec   (4501 perm/sec)   p_kst 1.426667e-02   p_cons 3.034000e-01   p_joint 2.771667e-02

Joint ci ratio: 8.416536e-02	ci left: 2.879064e-02	ci right 3.133422e-02	k: 2103	n:70000
Cons ci ratio: 2.243202e-02	ci left: 3.003229e-01	ci right 3.071505e-01	k: 21261	n:70000
KS ci ratio: 1.223907e-01	ci left: 1.355820e-02	ci right 1.533952e-02	k: 1010	n:70000
GPR61   70000 perm   16 sec   (4403 perm/sec)   p_kst 1.442857e-02   p_cons 3.037286e-01   p_joint 3.004286e-02

Joint ci ratio: 8.165685e-02	ci left: 2.685546e-02	ci right 2.915394e-02	k: 2239	n:80000
Cons ci ratio: 2.101953e-02	ci left: 2.998164e-01	ci right 3.061978e-01	k: 24240	n:80000
KS ci ratio: 1.145077e-01	ci left: 1.361016e-02	ci right 1.527533e-02	k: 1154	n:80000
GPR61   80000 perm   19 sec   (4314 perm/sec)   p_kst 1.442500e-02   p_cons 3.030000e-01   p_joint 2.798750e-02

Joint ci ratio: 8.056032e-02	ci left: 2.459969e-02	ci right 2.667548e-02	k: 2306	n:90000
Cons ci ratio: 1.984304e-02	ci left: 2.994556e-01	ci right 3.054683e-01	k: 27221	n:90000
KS ci ratio: 1.074306e-01	ci left: 1.379404e-02	ci right 1.537081e-02	k: 1311	n:90000
GPR61   90000 perm   21 sec   (4228 perm/sec)   p_kst 1.456667e-02   p_cons 3.024556e-01   p_joint 2.562222e-02

Joint ci ratio: 6.666528e-02	ci left: 3.230475e-02	ci right 3.454242e-02	k: 3341	n:100000
Cons ci ratio: 1.882997e-02	ci left: 2.994942e-01	ci right 3.051972e-01	k: 30234	n:100000
KS ci ratio: 1.040677e-01	ci left: 1.326144e-02	ci right 1.472695e-02	k: 1398	n:100000
GPR61   100000 perm   24 sec   (4144 perm/sec)   p_kst 1.398000e-02   p_cons 3.023400e-01   p_joint 3.341000e-02

Joint ci ratio: 8.283045e-02	ci left: 1.912736e-02	ci right 2.078900e-02	k: 2194	n:110000
Cons ci ratio: 1.796122e-02	ci left: 2.994507e-01	ci right 3.048870e-01	k: 33238	n:110000
KS ci ratio: 9.822289e-02	ci left: 1.357120e-02	ci right 1.498186e-02	k: 1569	n:110000
GPR61   110000 perm   27 sec   (4069 perm/sec)   p_kst 1.426364e-02   p_cons 3.021636e-01   p_joint 1.994545e-02

Outputting figure to mutsig2_images.part000000000074/GPR61.4_1360_110000_0.014264_0.30216_0.019945.png
                gene_name: GPR61
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 38 percent done.
GPR63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.576527e-02	ci left: 4.133904e-01	ci right 4.328545e-01	k: 4231	n:10000
Cons ci ratio: 1.688045e-02	ci left: 8.363308e-01	ci right 8.506684e-01	k: 8436	n:10000
KS ci ratio: 5.966541e-02	ci left: 2.924153e-01	ci right 3.105005e-01	k: 3014	n:10000
GPR63   10000 perm   2 sec   (5662 perm/sec)   p_kst 3.014000e-01   p_cons 8.436000e-01   p_joint 4.231000e-01

Outputting figure to mutsig2_images.part000000000074/GPR63.4_1264_10000_0.3014_0.8436_0.4231.png
                gene_name: GPR63
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 40 percent done.
GPRASP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.854796e-02	ci left: 6.439792e-01	ci right 6.627314e-01	k: 6534	n:10000
Cons ci ratio: 5.040300e-02	ci left: 3.672894e-01	ci right 3.863825e-01	k: 3768	n:10000
KS ci ratio: 2.908557e-02	ci left: 6.354296e-01	ci right 6.542860e-01	k: 6449	n:10000
GPRASP2   10000 perm   2 sec   (4957 perm/sec)   p_kst 6.449000e-01   p_cons 3.768000e-01   p_joint 6.534000e-01

Outputting figure to mutsig2_images.part000000000074/GPRASP2.4_2521_10000_0.6449_0.3768_0.6534.png
                gene_name: GPRASP2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 42 percent done.
GPRIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.392025e-02	ci left: 2.644834e-01	ci right 2.820489e-01	k: 2732	n:10000
Cons ci ratio: 1.857837e-02	ci left: 8.088732e-01	ci right 8.241419e-01	k: 8166	n:10000
KS ci ratio: 1.113278e-01	ci left: 1.041267e-01	ci right 1.165013e-01	k: 1102	n:10000
GPRIN1   10000 perm   2 sec   (4255 perm/sec)   p_kst 1.102000e-01   p_cons 8.166000e-01   p_joint 2.732000e-01

Joint ci ratio: 4.631103e-02	ci left: 2.576029e-01	ci right 2.698659e-01	k: 5274	n:20000
Cons ci ratio: 1.342289e-02	ci left: 8.045437e-01	ci right 8.154660e-01	k: 16201	n:20000
KS ci ratio: 7.870210e-02	ci left: 1.059903e-01	ci right 1.147233e-01	k: 2206	n:20000
GPRIN1   20000 perm   6 sec   (3630 perm/sec)   p_kst 1.103000e-01   p_cons 8.100500e-01   p_joint 2.637000e-01

Outputting figure to mutsig2_images.part000000000074/GPRIN1.4_3031_20000_0.1103_0.81005_0.2637.png
                gene_name: GPRIN1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 44 percent done.
GPRIN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.546883e-02	ci left: 8.584522e-01	ci right 8.719343e-01	k: 8653	n:10000
Cons ci ratio: 4.826174e-02	ci left: 3.877898e-01	ci right 4.070700e-01	k: 3974	n:10000
KS ci ratio: 6.184739e-03	ci left: 9.725959e-01	ci right 9.787227e-01	k: 9758	n:10000
GPRIN3   10000 perm   2 sec   (4725 perm/sec)   p_kst 9.758000e-01   p_cons 3.974000e-01   p_joint 8.653000e-01

Outputting figure to mutsig2_images.part000000000074/GPRIN3.4_2335_10000_0.9758_0.3974_0.8653.png
                gene_name: GPRIN3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 46 percent done.
GPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.981304e-02	ci left: 2.312609e-01	ci right 2.480910e-01	k: 2396	n:10000
Cons ci ratio: 4.955534e-02	ci left: 3.752485e-01	ci right 3.944186e-01	k: 3848	n:10000
KS ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
GPS2   10000 perm   2 sec   (5545 perm/sec)   p_kst 1.789000e-01   p_cons 3.848000e-01   p_joint 2.396000e-01

Outputting figure to mutsig2_images.part000000000074/GPS2.4_1024_10000_0.1789_0.3848_0.2396.png
                gene_name: GPS2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 48 percent done.
GPX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.295844e-02	ci left: 5.760717e-01	ci right 5.954783e-01	k: 5858	n:10000
KS ci ratio: 3.210996e-02	ci left: 5.887143e-01	ci right 6.080283e-01	k: 5984	n:10000
GPX5   10000 perm   2 sec   (5171 perm/sec)   p_kst 5.984000e-01   p_cons 5.858000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPX5.4_686_10000_0.5984_0.5858_1.png
                gene_name: GPX5
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
GRAMD1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.010159e-02	ci left: 7.837077e-01	ci right 7.997220e-01	k: 7918	n:10000
KS ci ratio: 1.811177e-02	ci left: 8.164937e-01	ci right 8.315171e-01	k: 8241	n:10000
GRAMD1C   10000 perm   2 sec   (5121 perm/sec)   p_kst 8.241000e-01   p_cons 7.918000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GRAMD1C.4_2061_10000_0.8241_0.7918_1.png
                gene_name: GRAMD1C
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
GPR180
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.726746e-02	ci left: 2.448978e-01	ci right 2.620461e-01	k: 2534	n:10000
Cons ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
KS ci ratio: 4.153682e-02	ci left: 4.611763e-01	ci right 4.808406e-01	k: 4710	n:10000
GPR180   10000 perm   2 sec   (5665 perm/sec)   p_kst 4.710000e-01   p_cons 6.190000e-02   p_joint 2.534000e-01

Joint ci ratio: 4.496660e-02	ci left: 2.691177e-01	ci right 2.815477e-01	k: 5506	n:20000
Cons ci ratio: 1.071685e-01	ci left: 5.933027e-02	ci right 6.609755e-02	k: 1253	n:20000
KS ci ratio: 2.935567e-02	ci left: 4.643615e-01	ci right 4.782468e-01	k: 9426	n:20000
GPR180   20000 perm   4 sec   (4990 perm/sec)   p_kst 4.713000e-01   p_cons 6.265000e-02   p_joint 2.753000e-01

Joint ci ratio: 4.516042e-02	ci left: 1.961802e-01	ci right 2.052778e-01	k: 6021	n:30000
Cons ci ratio: 8.871728e-02	ci left: 5.838299e-02	ci right 6.383572e-02	k: 1832	n:30000
KS ci ratio: 2.401599e-02	ci left: 4.646718e-01	ci right 4.760006e-01	k: 14110	n:30000
GPR180   30000 perm   6 sec   (4765 perm/sec)   p_kst 4.703333e-01   p_cons 6.106667e-02   p_joint 2.007000e-01

Outputting figure to mutsig2_images.part000000000074/GPR180.3_1359_30000_0.47033_0.061067_0.2007.png
                gene_name: GPR180
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 54 percent done.
GPR31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.734874e-02	ci left: 5.142557e-01	ci right 5.339302e-01	k: 5241	n:10000
Cons ci ratio: 6.572163e-02	ci left: 2.536986e-01	ci right 2.710400e-01	k: 2623	n:10000
KS ci ratio: 3.173722e-02	ci left: 5.943354e-01	ci right 6.136040e-01	k: 6040	n:10000
GPR31   10000 perm   2 sec   (5022 perm/sec)   p_kst 6.040000e-01   p_cons 2.623000e-01   p_joint 5.241000e-01

Outputting figure to mutsig2_images.part000000000074/GPR31.3_964_10000_0.604_0.2623_0.5241.png
                gene_name: GPR31
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 56 percent done.
GPR37L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.143806e-02	ci left: 3.578414e-01	ci right 3.768359e-01	k: 3673	n:10000
KS ci ratio: 3.352525e-02	ci left: 5.677472e-01	ci right 5.872076e-01	k: 5775	n:10000
GPR37L1   10000 perm   2 sec   (6062 perm/sec)   p_kst 5.775000e-01   p_cons 3.673000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR37L1.3_1454_10000_0.5775_0.3673_1.png
                gene_name: GPR37L1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
GPR39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.802042e-02	ci left: 5.053515e-01	ci right 5.250397e-01	k: 5152	n:10000
Cons ci ratio: 1.634004e-02	ci left: 8.448877e-01	ci right 8.589066e-01	k: 8520	n:10000
KS ci ratio: 5.031728e-02	ci left: 3.680851e-01	ci right 3.871862e-01	k: 3776	n:10000
GPR39   10000 perm   2 sec   (5559 perm/sec)   p_kst 3.776000e-01   p_cons 8.520000e-01   p_joint 5.152000e-01

Outputting figure to mutsig2_images.part000000000074/GPR39.3_1370_10000_0.3776_0.852_0.5152.png
                gene_name: GPR39
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 60 percent done.
GPR52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.601716e-03	ci left: 9.840410e-01	ci right 9.886693e-01	k: 9865	n:10000
KS ci ratio: 7.681810e-03	ci left: 9.592178e-01	ci right 9.667094e-01	k: 9631	n:10000
GPR52   10000 perm   2 sec   (4607 perm/sec)   p_kst 9.631000e-01   p_cons 9.865000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR52.3_1090_10000_0.9631_0.9865_1.png
                gene_name: GPR52
               theta_stop: 0.0077 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
GPX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.066629e-02	ci left: 2.269154e-01	ci right 2.436391e-01	k: 2352	n:10000
Cons ci ratio: 3.088809e-02	ci left: 6.072889e-01	ci right 6.264430e-01	k: 6169	n:10000
KS ci ratio: 1.433170e-01	ci left: 6.459169e-02	ci right 7.466078e-02	k: 695	n:10000
GPX3   10000 perm   2 sec   (5742 perm/sec)   p_kst 6.950000e-02   p_cons 6.169000e-01   p_joint 2.352000e-01

Joint ci ratio: 5.705493e-02	ci left: 1.854735e-01	ci right 1.964165e-01	k: 3818	n:20000
Cons ci ratio: 2.162338e-02	ci left: 6.148864e-01	ci right 6.283782e-01	k: 12433	n:20000
KS ci ratio: 9.939914e-02	ci left: 6.855270e-02	ci right 7.577228e-02	k: 1442	n:20000
GPX3   20000 perm   4 sec   (5313 perm/sec)   p_kst 7.210000e-02   p_cons 6.216500e-01   p_joint 1.909000e-01

Outputting figure to mutsig2_images.part000000000074/GPX3.3_701_20000_0.0721_0.62165_0.1909.png
                gene_name: GPX3
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 63 percent done.
GPX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.697613e-02	ci left: 5.192595e-01	ci right 5.389235e-01	k: 5291	n:10000
KS ci ratio: 2.944842e-02	ci left: 6.296981e-01	ci right 6.486207e-01	k: 6392	n:10000
GPX6   10000 perm   2 sec   (6312 perm/sec)   p_kst 6.392000e-01   p_cons 5.291000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPX6.3_686_10000_0.6392_0.5291_1.png
                gene_name: GPX6
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
GRAMD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.469450e-02	ci left: 4.249543e-01	ci right 4.444837e-01	k: 4347	n:10000
Cons ci ratio: 8.154559e-02	ci left: 1.799903e-01	ci right 1.953921e-01	k: 1876	n:10000
KS ci ratio: 1.633357e-02	ci left: 8.449897e-01	ci right 8.590046e-01	k: 8521	n:10000
GRAMD2   10000 perm   2 sec   (5114 perm/sec)   p_kst 8.521000e-01   p_cons 1.876000e-01   p_joint 4.347000e-01

Outputting figure to mutsig2_images.part000000000074/GRAMD2.3_1113_10000_0.8521_0.1876_0.4347.png
                gene_name: GRAMD2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 67 percent done.
GRAMD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.519871e-02	ci left: 1.672051e-01	ci right 1.821849e-01	k: 1746	n:10000
Cons ci ratio: 3.123541e-02	ci left: 6.019660e-01	ci right 6.211689e-01	k: 6116	n:10000
KS ci ratio: 2.765105e-01	ci left: 1.697368e-02	ci right 2.251108e-02	k: 196	n:10000
GRAMD3   10000 perm   2 sec   (5937 perm/sec)   p_kst 1.960000e-02   p_cons 6.116000e-01   p_joint 1.746000e-01

Joint ci ratio: 1.297411e-01	ci left: 4.081147e-02	ci right 4.652216e-02	k: 872	n:20000
Cons ci ratio: 2.165557e-02	ci left: 6.141841e-01	ci right 6.276807e-01	k: 12419	n:20000
KS ci ratio: 2.038660e-01	ci left: 1.629772e-02	ci right 2.004424e-02	k: 362	n:20000
GRAMD3   20000 perm   4 sec   (5190 perm/sec)   p_kst 1.810000e-02   p_cons 6.209500e-01   p_joint 4.360000e-02

Joint ci ratio: 9.454075e-02	ci left: 5.163197e-02	ci right 5.678813e-02	k: 1625	n:30000
Cons ci ratio: 1.818974e-02	ci left: 6.019809e-01	ci right 6.130649e-01	k: 18226	n:30000
KS ci ratio: 1.671622e-01	ci left: 1.649373e-02	ci right 1.953397e-02	k: 539	n:30000
GRAMD3   30000 perm   6 sec   (4897 perm/sec)   p_kst 1.796667e-02   p_cons 6.075333e-01   p_joint 5.416667e-02

Joint ci ratio: 9.814697e-02	ci left: 3.646471e-02	ci right 4.025268e-02	k: 1533	n:40000
Cons ci ratio: 1.528473e-02	ci left: 6.170516e-01	ci right 6.265808e-01	k: 24873	n:40000
KS ci ratio: 1.439550e-01	ci left: 1.688847e-02	ci right 1.953214e-02	k: 727	n:40000
GRAMD3   40000 perm   8 sec   (4717 perm/sec)   p_kst 1.817500e-02   p_cons 6.218250e-01   p_joint 3.832500e-02

Joint ci ratio: 1.005855e-01	ci left: 2.799524e-02	ci right 3.097972e-02	k: 1473	n:50000
Cons ci ratio: 1.365269e-02	ci left: 6.181939e-01	ci right 6.267119e-01	k: 31123	n:50000
KS ci ratio: 1.300740e-01	ci left: 1.667845e-02	ci right 1.901801e-02	k: 891	n:50000
GRAMD3   50000 perm   11 sec   (4577 perm/sec)   p_kst 1.782000e-02   p_cons 6.224600e-01   p_joint 2.946000e-02

Joint ci ratio: 7.498205e-02	ci left: 4.193074e-02	ci right 4.521360e-02	k: 2613	n:60000
Cons ci ratio: 1.247450e-02	ci left: 6.181394e-01	ci right 6.259155e-01	k: 37322	n:60000
KS ci ratio: 1.188767e-01	ci left: 1.674087e-02	ci right 1.887281e-02	k: 1067	n:60000
GRAMD3   60000 perm   14 sec   (4426 perm/sec)   p_kst 1.778333e-02   p_cons 6.220333e-01   p_joint 4.355000e-02

Joint ci ratio: 5.942291e-02	ci left: 5.678672e-02	ci right 6.027856e-02	k: 4096	n:70000
Cons ci ratio: 1.157913e-02	ci left: 6.172080e-01	ci right 6.244106e-01	k: 43457	n:70000
KS ci ratio: 1.089947e-01	ci left: 1.715310e-02	ci right 1.914427e-02	k: 1269	n:70000
GRAMD3   70000 perm   16 sec   (4303 perm/sec)   p_kst 1.812857e-02   p_cons 6.208143e-01   p_joint 5.851429e-02

Joint ci ratio: 5.250995e-02	ci left: 6.341236e-02	ci right 6.684426e-02	k: 5209	n:80000
Cons ci ratio: 1.082215e-02	ci left: 6.178405e-01	ci right 6.245757e-01	k: 49697	n:80000
KS ci ratio: 1.019706e-01	ci left: 1.721183e-02	ci right 1.907334e-02	k: 1450	n:80000
GRAMD3   80000 perm   19 sec   (4131 perm/sec)   p_kst 1.812500e-02   p_cons 6.212125e-01   p_joint 6.511250e-02

Joint ci ratio: 5.433094e-02	ci left: 5.319030e-02	ci right 5.617182e-02	k: 4920	n:90000
Cons ci ratio: 1.021507e-02	ci left: 6.174872e-01	ci right 6.238383e-01	k: 55860	n:90000
KS ci ratio: 9.627037e-02	ci left: 1.721734e-02	ci right 1.896947e-02	k: 1627	n:90000
GRAMD3   90000 perm   23 sec   (3998 perm/sec)   p_kst 1.807778e-02   p_cons 6.206667e-01   p_joint 5.466667e-02

Outputting figure to mutsig2_images.part000000000074/GRAMD3.3_1569_90000_0.018078_0.62067_0.054667.png
                gene_name: GRAMD3
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.056 

Current progress: 69 percent done.
GRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.519279e-02	ci left: 3.259469e-01	ci right 3.445492e-01	k: 3352	n:10000
Cons ci ratio: 1.159911e-01	ci left: 9.652432e-02	ci right 1.085084e-01	k: 1024	n:10000
KS ci ratio: 6.334593e-02	ci left: 2.680468e-01	ci right 2.856834e-01	k: 2768	n:10000
GRB2   10000 perm   2 sec   (6224 perm/sec)   p_kst 2.768000e-01   p_cons 1.024000e-01   p_joint 3.352000e-01

Joint ci ratio: 6.897111e-02	ci left: 1.342332e-01	ci right 1.438720e-01	k: 2780	n:20000
Cons ci ratio: 8.173122e-02	ci left: 9.891852e-02	ci right 1.073972e-01	k: 2062	n:20000
KS ci ratio: 4.506823e-02	ci left: 2.682241e-01	ci right 2.806416e-01	k: 5488	n:20000
GRB2   20000 perm   4 sec   (5319 perm/sec)   p_kst 2.744000e-01   p_cons 1.031000e-01   p_joint 1.390000e-01

Outputting figure to mutsig2_images.part000000000074/GRB2.3_674_20000_0.2744_0.1031_0.139.png
                gene_name: GRB2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 71 percent done.
GPR182
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.133519e-02	ci left: 9.174977e-01	ci right 9.280545e-01	k: 9229	n:10000
KS ci ratio: 5.753719e-03	ci left: 9.759962e-01	ci right 9.817201e-01	k: 9790	n:10000
GPR182   10000 perm   2 sec   (6498 perm/sec)   p_kst 9.790000e-01   p_cons 9.229000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR182.2_1219_10000_0.979_0.9229_1.png
                gene_name: GPR182
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
GPR22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.683541e-02	ci left: 5.211612e-01	ci right 5.408207e-01	k: 5310	n:10000
KS ci ratio: 6.651539e-03	ci left: 9.686815e-01	ci right 9.752397e-01	k: 9721	n:10000
GPR22   10000 perm   2 sec   (6221 perm/sec)   p_kst 9.721000e-01   p_cons 5.310000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR22.2_1306_10000_0.9721_0.531_1.png
                gene_name: GPR22
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
GPR26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.258412e-02	ci left: 2.175373e-01	ci right 2.340227e-01	k: 2257	n:10000
Cons ci ratio: 4.961818e-02	ci left: 3.746515e-01	ci right 3.938160e-01	k: 3842	n:10000
KS ci ratio: 7.283413e-02	ci left: 2.163531e-01	ci right 2.328076e-01	k: 2245	n:10000
GPR26   10000 perm   1 sec   (6708 perm/sec)   p_kst 2.245000e-01   p_cons 3.842000e-01   p_joint 2.257000e-01

Outputting figure to mutsig2_images.part000000000074/GPR26.2_1026_10000_0.2245_0.3842_0.2257.png
                gene_name: GPR26
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 77 percent done.
GPR32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.223299e-02	ci left: 3.507829e-01	ci right 3.696986e-01	k: 3602	n:10000
Cons ci ratio: 9.768106e-02	ci left: 1.318837e-01	ci right 1.455275e-01	k: 1386	n:10000
KS ci ratio: 6.379177e-02	ci left: 2.652752e-01	ci right 2.828566e-01	k: 2740	n:10000
GPR32   10000 perm   2 sec   (5036 perm/sec)   p_kst 2.740000e-01   p_cons 1.386000e-01   p_joint 3.602000e-01

Outputting figure to mutsig2_images.part000000000074/GPR32.2_1075_10000_0.274_0.1386_0.3602.png
                gene_name: GPR32
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 79 percent done.
GPR56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.240747e-02	ci left: 1.454077e-01	ci right 1.595954e-01	k: 1524	n:10000
Cons ci ratio: 8.513967e-02	ci left: 1.674016e-01	ci right 1.823882e-01	k: 1748	n:10000
KS ci ratio: 7.241845e-02	ci left: 2.183268e-01	ci right 2.348328e-01	k: 2265	n:10000
GPR56   10000 perm   2 sec   (4923 perm/sec)   p_kst 2.265000e-01   p_cons 1.748000e-01   p_joint 1.524000e-01

Outputting figure to mutsig2_images.part000000000074/GPR56.2_2149_10000_0.2265_0.1748_0.1524.png
                gene_name: GPR56
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 81 percent done.
GPR75
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.228335e-03	ci left: 9.635202e-01	ci right 9.706043e-01	k: 9672	n:10000
KS ci ratio: 1.855977e-02	ci left: 8.091780e-01	ci right 8.244370e-01	k: 8169	n:10000
GPR75   10000 perm   2 sec   (5460 perm/sec)   p_kst 8.169000e-01   p_cons 9.672000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPR75.2_1627_10000_0.8169_0.9672_1.png
                gene_name: GPR75
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
GPR77
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.345887e-02	ci left: 8.884162e-01	ci right 9.005529e-01	k: 8946	n:10000
Cons ci ratio: 4.033134e-02	ci left: 4.758596e-01	ci right 4.955488e-01	k: 4857	n:10000
KS ci ratio: 6.197770e-03	ci left: 9.724899e-01	ci right 9.786288e-01	k: 9757	n:10000
GPR77   10000 perm   1 sec   (6851 perm/sec)   p_kst 9.757000e-01   p_cons 4.857000e-01   p_joint 8.946000e-01

Outputting figure to mutsig2_images.part000000000074/GPR77.2_1018_10000_0.9757_0.4857_0.8946.png
                gene_name: GPR77
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 85 percent done.
GPRC5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.016747e-01	ci left: 1.227823e-01	ci right 1.360344e-01	k: 1293	n:10000
Cons ci ratio: 8.355196e-02	ci left: 1.728091e-01	ci right 1.879776e-01	k: 1803	n:10000
KS ci ratio: 2.418322e-01	ci left: 2.249916e-02	ci right 2.878131e-02	k: 255	n:10000
GPRC5A   10000 perm   2 sec   (6608 perm/sec)   p_kst 2.550000e-02   p_cons 1.803000e-01   p_joint 1.293000e-01

Joint ci ratio: 3.463711e-02	ci left: 3.835805e-01	ci right 3.971514e-01	k: 7807	n:20000
Cons ci ratio: 5.841046e-02	ci left: 1.784039e-01	ci right 1.891882e-01	k: 3675	n:20000
KS ci ratio: 1.670300e-01	ci left: 2.455782e-02	ci right 2.908116e-02	k: 535	n:20000
GPRC5A   20000 perm   3 sec   (5756 perm/sec)   p_kst 2.675000e-02   p_cons 1.837500e-01   p_joint 3.903500e-01

Joint ci ratio: 2.931386e-02	ci left: 3.679555e-01	ci right 3.789357e-01	k: 11203	n:30000
Cons ci ratio: 4.788912e-02	ci left: 1.781764e-01	ci right 1.869518e-01	k: 5476	n:30000
KS ci ratio: 1.402838e-01	ci left: 2.358463e-02	ci right 2.717476e-02	k: 760	n:30000
GPRC5A   30000 perm   6 sec   (5438 perm/sec)   p_kst 2.533333e-02   p_cons 1.825333e-01   p_joint 3.734333e-01

Joint ci ratio: 3.740994e-02	ci left: 2.113299e-01	ci right 2.194115e-01	k: 8614	n:40000
Cons ci ratio: 4.182637e-02	ci left: 1.762707e-01	ci right 1.838259e-01	k: 7201	n:40000
KS ci ratio: 1.212245e-01	ci left: 2.392868e-02	ci right 2.704073e-02	k: 1018	n:40000
GPRC5A   40000 perm   8 sec   (5191 perm/sec)   p_kst 2.545000e-02   p_cons 1.800250e-01   p_joint 2.153500e-01

Joint ci ratio: 2.048744e-02	ci left: 4.183447e-01	ci right 4.270243e-01	k: 21134	n:50000
Cons ci ratio: 3.743225e-02	ci left: 1.765022e-01	ci right 1.832550e-01	k: 8993	n:50000
KS ci ratio: 1.092101e-01	ci left: 2.374649e-02	ci right 2.650902e-02	k: 1255	n:50000
GPRC5A   50000 perm   10 sec   (5041 perm/sec)   p_kst 2.510000e-02   p_cons 1.798600e-01   p_joint 4.226800e-01

Joint ci ratio: 1.734859e-02	ci left: 4.557226e-01	ci right 4.637146e-01	k: 27583	n:60000
Cons ci ratio: 3.420911e-02	ci left: 1.764696e-01	ci right 1.826281e-01	k: 10772	n:60000
KS ci ratio: 9.889680e-02	ci left: 2.425331e-02	ci right 2.679286e-02	k: 1530	n:60000
GPRC5A   60000 perm   12 sec   (4903 perm/sec)   p_kst 2.550000e-02   p_cons 1.795333e-01   p_joint 4.597167e-01

Outputting figure to mutsig2_images.part000000000074/GPRC5A.2_1086_60000_0.0255_0.17953_0.45972.png
                gene_name: GPRC5A
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.46 

Current progress: 87 percent done.
GPRC5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.313950e-03	ci left: 9.715363e-01	ci right 9.777830e-01	k: 9748	n:10000
KS ci ratio: 1.476486e-02	ci left: 8.691762e-01	ci right 8.822040e-01	k: 8758	n:10000
GPRC5B   10000 perm   2 sec   (5894 perm/sec)   p_kst 8.758000e-01   p_cons 9.748000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GPRC5B.2_1224_10000_0.8758_0.9748_1.png
                gene_name: GPRC5B
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
GPRC5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.008940e-02	ci left: 7.839105e-01	ci right 7.999191e-01	k: 7920	n:10000
Cons ci ratio: 2.451118e-02	ci left: 7.099764e-01	ci right 7.276960e-01	k: 7189	n:10000
KS ci ratio: 3.190996e-02	ci left: 5.917254e-01	ci right 6.110155e-01	k: 6014	n:10000
GPRC5C   10000 perm   2 sec   (5262 perm/sec)   p_kst 6.014000e-01   p_cons 7.189000e-01   p_joint 7.920000e-01

Outputting figure to mutsig2_images.part000000000074/GPRC5C.2_1485_10000_0.6014_0.7189_0.792.png
                gene_name: GPRC5C
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 90 percent done.
GPSM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.217638e-02	ci left: 3.512799e-01	ci right 3.702013e-01	k: 3607	n:10000
Cons ci ratio: 5.718257e-02	ci left: 3.104639e-01	ci right 3.288413e-01	k: 3196	n:10000
KS ci ratio: 4.028294e-02	ci left: 4.764591e-01	ci right 4.961489e-01	k: 4863	n:10000
GPSM2   10000 perm   2 sec   (5738 perm/sec)   p_kst 4.863000e-01   p_cons 3.196000e-01   p_joint 3.607000e-01

Outputting figure to mutsig2_images.part000000000074/GPSM2.2_2111_10000_0.4863_0.3196_0.3607.png
                gene_name: GPSM2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 92 percent done.
GPT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.215377e-02	ci left: 3.514787e-01	ci right 3.704024e-01	k: 3609	n:10000
Cons ci ratio: 1.406212e-01	ci left: 6.700893e-02	ci right 7.724202e-02	k: 720	n:10000
KS ci ratio: 5.105301e-02	ci left: 3.613218e-01	ci right 3.803535e-01	k: 3708	n:10000
GPT2   10000 perm   2 sec   (4446 perm/sec)   p_kst 3.708000e-01   p_cons 7.200000e-02   p_joint 3.609000e-01

Joint ci ratio: 7.800854e-02	ci left: 1.077101e-01	ci right 1.165030e-01	k: 2241	n:20000
Cons ci ratio: 1.009534e-01	ci left: 6.655043e-02	ci right 7.367517e-02	k: 1401	n:20000
KS ci ratio: 3.613073e-02	ci left: 3.637514e-01	ci right 3.771863e-01	k: 7409	n:20000
GPT2   20000 perm   5 sec   (4203 perm/sec)   p_kst 3.704500e-01   p_cons 7.005000e-02   p_joint 1.120500e-01

Joint ci ratio: 5.468486e-02	ci left: 1.422198e-01	ci right 1.502489e-01	k: 4386	n:30000
Cons ci ratio: 8.341394e-02	ci left: 6.569950e-02	ci right 7.145106e-02	k: 2056	n:30000
KS ci ratio: 2.965083e-02	ci left: 3.626388e-01	ci right 3.735867e-01	k: 11043	n:30000
GPT2   30000 perm   8 sec   (3852 perm/sec)   p_kst 3.681000e-01   p_cons 6.853333e-02   p_joint 1.462000e-01

Outputting figure to mutsig2_images.part000000000074/GPT2.2_1616_30000_0.3681_0.068533_0.1462.png
                gene_name: GPT2
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 94 percent done.
GPX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.413489e-01	ci left: 2.259324e-02	ci right 2.888717e-02	k: 256	n:10000
Cons ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
KS ci ratio: 7.295982e-02	ci left: 2.157611e-01	ci right 2.322000e-01	k: 2239	n:10000
GPX2   10000 perm   2 sec   (5653 perm/sec)   p_kst 2.239000e-01   p_cons 1.190000e-02   p_joint 2.560000e-02

Joint ci ratio: 1.711769e-01	ci left: 2.335948e-02	ci right 2.777992e-02	k: 510	n:20000
Cons ci ratio: 2.499297e-01	ci left: 1.063101e-02	ci right 1.371326e-02	k: 242	n:20000
KS ci ratio: 5.152424e-02	ci left: 2.186336e-01	ci right 2.302466e-01	k: 4488	n:20000
GPX2   20000 perm   4 sec   (5079 perm/sec)   p_kst 2.244000e-01   p_cons 1.210000e-02   p_joint 2.550000e-02

Joint ci ratio: 1.150836e-01	ci left: 3.508671e-02	ci right 3.940351e-02	k: 1116	n:30000
Cons ci ratio: 2.019752e-01	ci left: 1.114681e-02	ci right 1.368226e-02	k: 371	n:30000
KS ci ratio: 4.235960e-02	ci left: 2.173407e-01	ci right 2.267798e-01	k: 6661	n:30000
GPX2   30000 perm   7 sec   (4606 perm/sec)   p_kst 2.220333e-01   p_cons 1.236667e-02   p_joint 3.720000e-02

Joint ci ratio: 1.340683e-01	ci left: 1.952050e-02	ci right 2.234965e-02	k: 836	n:40000
Cons ci ratio: 1.740303e-01	ci left: 1.143422e-02	ci right 1.363740e-02	k: 500	n:40000
KS ci ratio: 3.698351e-02	ci left: 2.152034e-01	ci right 2.233374e-01	k: 8770	n:40000
GPX2   40000 perm   9 sec   (4617 perm/sec)   p_kst 2.192500e-01   p_cons 1.250000e-02   p_joint 2.090000e-02

Joint ci ratio: 9.304697e-02	ci left: 3.268272e-02	ci right 3.589164e-02	k: 1713	n:50000
Cons ci ratio: 1.538335e-01	ci left: 1.183306e-02	ci right 1.382410e-02	k: 640	n:50000
KS ci ratio: 3.301498e-02	ci left: 2.162959e-01	ci right 2.235767e-01	k: 10996	n:50000
GPX2   50000 perm   11 sec   (4539 perm/sec)   p_kst 2.199200e-01   p_cons 1.280000e-02   p_joint 3.426000e-02

Joint ci ratio: 7.053952e-02	ci left: 4.722069e-02	ci right 5.068977e-02	k: 2936	n:60000
Cons ci ratio: 9.603816e-02	ci left: 2.571767e-02	ci right 2.832835e-02	k: 1620	n:60000
KS ci ratio: 3.014342e-02	ci left: 2.165581e-01	ci right 2.232024e-01	k: 13192	n:60000
GPX2   60000 perm   14 sec   (4417 perm/sec)   p_kst 2.198667e-01   p_cons 2.700000e-02   p_joint 4.893333e-02

Outputting figure to mutsig2_images.part000000000074/GPX2.2_581_60000_0.21987_0.027_0.048933.png
                gene_name: GPX2
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.051 

Current progress: 96 percent done.
GRHL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.019958e-02	ci left: 6.179381e-01	ci right 6.369876e-01	k: 6275	n:10000
KS ci ratio: 1.952724e-02	ci left: 7.932406e-01	ci right 8.089836e-01	k: 8012	n:10000
GRHL2   10000 perm   2 sec   (5373 perm/sec)   p_kst 8.012000e-01   p_cons 6.275000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GRHL2.2_1942_10000_0.8012_0.6275_1.png
                gene_name: GRHL2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
GRHL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.331998e-01	ci left: 7.436791e-02	ci right 8.507844e-02	k: 796	n:10000
KS ci ratio: 4.463091e-02	ci left: 4.256523e-01	ci right 4.451853e-01	k: 4354	n:10000
GRHL3   10000 perm   2 sec   (5257 perm/sec)   p_kst 4.354000e-01   p_cons 7.960000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 9.464079e-02	ci left: 7.524916e-02	ci right 8.277377e-02	k: 1579	n:20000
KS ci ratio: 3.088711e-02	ci left: 4.391442e-01	ci right 4.529715e-01	k: 8921	n:20000
GRHL3   20000 perm   4 sec   (4773 perm/sec)   p_kst 4.460500e-01   p_cons 7.895000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000074/GRHL3.2_1909_20000_0.44605_0.07895_1.png
                gene_name: GRHL3
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000074
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 74 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1709>
Subject: Job 9893959: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1709>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000075> was used as the working directory.
Started at Sat Oct  6 00:10:26 2012
Results reported at Sat Oct  6 00:24:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000075.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000075.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 75  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000075.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    891.80 sec.
    Max Memory :      3557 MB
    Max Swap   :      5958 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
75
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 75
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 75: processing genes 6672 - 6761
Calculating significance of each gene.
Using projection method.
6672	GRHPR	4.977604e-01
6673	GRIA1	2.340216e-05
6674	GRIA2	2.694213e-02
6675	GRIA3	2.094787e-02
In gene GRIA4 the following bins exceed PROBCAP:
    COAD-AA-A01Z	categ 6	N = 3040    n = 1	mu =   3.62e-07
6676	GRIA4	1.355688e-04
6677	GRID1	2.488923e-02
6678	GRID2	1.016259e-02
6679	GRIK1	5.004737e-01
6680	GRIK2	1.358096e-02
In gene GRIK3 the following bins exceed PROBCAP:
    COAD-AA-A01I	categ 6	N = 2809    n = 1	mu =   3.29e-07
6681	GRIK3	4.119541e-06
6682	GRIK4	1.663906e-02
6683	GRIK5	5.862501e-01
6684	GRIN1	9.878502e-01
6685	GRIN2A	6.303600e-05
6686	GRIN2B	8.251372e-01
6687	GRIN2C	9.566207e-01
6688	GRIN2D	3.458215e-01
6689	GRIN3A	4.670917e-01
6690	GRIN3B	1
6691	GRINA	1
6692	GRINL1A	1
6693	GRIP1	1.807049e-01
6694	GRIP2	8.076134e-01
6695	GRIPAP1	2.813752e-01
6696	GRK1	4.151303e-01
6697	GRK4	1.436103e-01
6698	GRK5	2.929250e-01
In gene GRK6 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 1778    n = 1	mu =   8.55e-07
6699	GRK6	6.076992e-01
6700	GRK7	8.800584e-01
6701	GRLF1	6.281482e-01
6702	GRM1	1.967094e-02
6703	GRM2	4.750739e-01
6704	GRM3	5.849397e-02
6705	GRM4	6.028962e-01
6706	GRM5	8.638259e-03
6707	GRM6	2.186491e-02
6708	GRM7	2.504439e-03
6709	GRM8	6.711239e-01
6710	GRN	6.384985e-01
6711	GRP	1.163357e-01
6712	GRPEL1	5.226091e-01
In gene GRPEL2 the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 694     n = 1	mu =   7.59e-07
6713	GRPEL2	4.080764e-01
6714	GRPR	2.045071e-01
6715	GRSF1	8.045110e-01
6716	GRTP1	8.174683e-01
6717	GRWD1	7.775542e-01
6718	GRXCR1	2.700973e-01
6719	GRXCR2	4.530350e-01
6720	GSC	1
6721	GSC2	4.127263e-01
6722	GSDMA	8.740381e-01
6723	GSDMB	1.695644e-02
6724	GSDMC	1.895366e-01
6725	GSDMD	1
6726	GSG1	2.193918e-01
6727	GSG1L	4.646383e-01
6728	GSG2	8.255256e-01
6729	GSK3A	3.481293e-01
6730	GSK3B	2.105048e-03
6731	GSN	1
6732	GSPT1	1
6733	GSPT2	1
6734	GSR	6.514776e-01
6735	GSS	3.162519e-01
6736	GSTA1	5.209054e-01
6737	GSTA2	1
6738	GSTA3	1.087726e-01
6739	GSTA4	1
6740	GSTA5	3.102614e-01
6741	GSTCD	1.664102e-01
6742	GSTK1	1
6743	GSTM2	4.448726e-01
6744	GSTM3	1.616891e-01
6745	GSTM4	1.594048e-01
6746	GSTM5	3.568211e-01
6747	GSTO1	4.327145e-01
6748	GSTO2	7.384213e-01
6749	GSTP1	1
6750	GSTT1	1
6751	GSTZ1	1.949746e-01
6752	GSX1	1
6753	GSX2	7.109935e-01
6754	GTDC1	1.265439e-01
6755	GTF2A1	4.129854e-01
6756	GTF2A1L	1
6757	GTF2A2	1
6758	GTF2B	6.500371e-01
6759	GTF2E1	1.349790e-01
6760	GTF2E2	1
6761	GTF2F1	3.548895e-01
Done

Running MutSig 2:
Scatter job 75: processing genes 6672 - 6761
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GRIN2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.576490e-02	ci left: 6.891970e-01	ci right 7.072873e-01	k: 6983	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
GRIN2A   10000 perm   2 sec   (4178 perm/sec)   p_kst 1   p_cons 6.983000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GRIN2A.21_4443_10000_1_0.6983_1.png
                gene_name: GRIN2A
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
GRIA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.442515e-02	ci left: 1.400152e-01	ci right 1.539911e-01	k: 1469	n:10000
Cons ci ratio: 1.183680e-02	ci left: 9.109059e-01	ci right 9.218501e-01	k: 9165	n:10000
KS ci ratio: 1.400983e-01	ci left: 6.749259e-02	ci right 7.775805e-02	k: 725	n:10000
GRIA1   10000 perm   2 sec   (4573 perm/sec)   p_kst 7.250000e-02   p_cons 9.165000e-01   p_joint 1.469000e-01

Joint ci ratio: 8.481310e-02	ci left: 9.239258e-02	ci right 1.006252e-01	k: 1929	n:20000
Cons ci ratio: 8.211510e-03	ci left: 9.154900e-01	ci right 9.230876e-01	k: 18387	n:20000
KS ci ratio: 9.877348e-02	ci left: 6.938317e-02	ci right 7.664156e-02	k: 1459	n:20000
GRIA1   20000 perm   5 sec   (4155 perm/sec)   p_kst 7.295000e-02   p_cons 9.193500e-01   p_joint 9.645000e-02

Outputting figure to mutsig2_images.part000000000075/GRIA1.19_2904_20000_0.07295_0.91935_0.09645.png
                gene_name: GRIA1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.10 

Current progress: 4 percent done.
GRIA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.595455e-02	ci left: 6.860719e-01	ci right 7.042143e-01	k: 6952	n:10000
Cons ci ratio: 4.732758e-02	ci left: 3.971502e-01	ci right 4.165041e-01	k: 4068	n:10000
KS ci ratio: 2.374251e-02	ci left: 7.227983e-01	ci right 7.402667e-01	k: 7316	n:10000
GRIA4   10000 perm   2 sec   (4413 perm/sec)   p_kst 7.316000e-01   p_cons 4.068000e-01   p_joint 6.952000e-01

Outputting figure to mutsig2_images.part000000000075/GRIA4.19_3040_10000_0.7316_0.4068_0.6952.png
                gene_name: GRIA4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 5 percent done.
GRIK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.314008e-03	ci left: 9.911641e-01	ci right 9.945392e-01	k: 9930	n:10000
KS ci ratio: 2.313860e-02	ci left: 7.329006e-01	ci right 7.501585e-01	k: 7416	n:10000
GRIK3   10000 perm   2 sec   (4571 perm/sec)   p_kst 7.416000e-01   p_cons 9.930000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GRIK3.19_2824_10000_0.7416_0.993_1.png
                gene_name: GRIK3
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
GRID1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
Cons ci ratio: 6.548479e-02	ci left: 2.550834e-01	ci right 2.724544e-01	k: 2637	n:10000
KS ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
GRID1   10000 perm   2 sec   (4977 perm/sec)   p_kst 1.300000e-03   p_cons 2.637000e-01   p_joint 7.700000e-03

Joint ci ratio: 4.676974e-01	ci left: 2.685268e-03	ci right 4.364195e-03	k: 69	n:20000
Cons ci ratio: 4.813796e-02	ci left: 2.429691e-01	ci right 2.550039e-01	k: 4979	n:20000
KS ci ratio: 6.716860e-01	ci left: 1.136048e-03	ci right 2.316440e-03	k: 33	n:20000
GRID1   20000 perm   4 sec   (4495 perm/sec)   p_kst 1.650000e-03   p_cons 2.489500e-01   p_joint 3.450000e-03

Joint ci ratio: 2.563593e-01	ci left: 6.742109e-03	ci right 8.754981e-03	k: 231	n:30000
Cons ci ratio: 3.915454e-02	ci left: 2.455052e-01	ci right 2.553432e-01	k: 7512	n:30000
KS ci ratio: 5.098300e-01	ci left: 1.468378e-03	ci right 2.498574e-03	k: 58	n:30000
GRID1   30000 perm   7 sec   (4312 perm/sec)   p_kst 1.933333e-03   p_cons 2.504000e-01   p_joint 7.700000e-03

Joint ci ratio: 2.582951e-01	ci left: 4.985810e-03	ci right 6.487312e-03	k: 228	n:40000
Cons ci ratio: 3.386002e-02	ci left: 2.467069e-01	ci right 2.552293e-01	k: 10038	n:40000
KS ci ratio: 4.434141e-01	ci left: 1.519469e-03	ci right 2.405341e-03	k: 77	n:40000
GRID1   40000 perm   10 sec   (4197 perm/sec)   p_kst 1.925000e-03   p_cons 2.509500e-01   p_joint 5.700000e-03

Joint ci ratio: 2.477981e-01	ci left: 4.363108e-03	ci right 5.615426e-03	k: 248	n:50000
Cons ci ratio: 3.030429e-02	ci left: 2.469255e-01	ci right 2.545435e-01	k: 12536	n:50000
KS ci ratio: 3.996951e-01	ci left: 1.537477e-03	ci right 2.322160e-03	k: 95	n:50000
GRID1   50000 perm   12 sec   (4109 perm/sec)   p_kst 1.900000e-03   p_cons 2.507200e-01   p_joint 4.960000e-03

Joint ci ratio: 2.407260e-01	ci left: 3.870500e-03	ci right 4.944972e-03	k: 263	n:60000
Cons ci ratio: 2.879518e-02	ci left: 2.325737e-01	ci right 2.393852e-01	k: 14158	n:60000
KS ci ratio: 3.589863e-01	ci left: 1.628124e-03	ci right 2.354734e-03	k: 118	n:60000
GRID1   60000 perm   15 sec   (4035 perm/sec)   p_kst 1.966667e-03   p_cons 2.359667e-01   p_joint 4.383333e-03

Joint ci ratio: 2.247086e-01	ci left: 3.842257e-03	ci right 4.828097e-03	k: 302	n:70000
Cons ci ratio: 2.659263e-02	ci left: 2.337256e-01	ci right 2.400390e-01	k: 16581	n:70000
KS ci ratio: 3.229742e-01	ci left: 1.761396e-03	ci right 2.452347e-03	k: 146	n:70000
GRID1   70000 perm   18 sec   (3962 perm/sec)   p_kst 2.085714e-03   p_cons 2.368714e-01   p_joint 4.314286e-03

Joint ci ratio: 2.176725e-01	ci left: 3.598075e-03	ci right 4.488484e-03	k: 322	n:80000
Cons ci ratio: 2.491291e-02	ci left: 2.333845e-01	ci right 2.392846e-01	k: 18906	n:80000
KS ci ratio: 2.994475e-01	ci left: 1.817832e-03	ci right 2.469118e-03	k: 170	n:80000
GRID1   80000 perm   21 sec   (3888 perm/sec)   p_kst 2.125000e-03   p_cons 2.363250e-01   p_joint 4.025000e-03

Joint ci ratio: 1.293592e-01	ci left: 9.446261e-03	ci right 1.076338e-02	k: 908	n:90000
Cons ci ratio: 2.347394e-02	ci left: 2.337711e-01	ci right 2.393348e-01	k: 21289	n:90000
KS ci ratio: 2.775725e-01	ci left: 1.904492e-03	ci right 2.528288e-03	k: 198	n:90000
GRID1   90000 perm   24 sec   (3820 perm/sec)   p_kst 2.200000e-03   p_cons 2.365444e-01   p_joint 1.008889e-02

Joint ci ratio: 1.265082e-01	ci left: 8.908035e-03	ci right 1.012067e-02	k: 950	n:100000
Cons ci ratio: 2.228202e-02	ci left: 2.337096e-01	ci right 2.389857e-01	k: 23634	n:100000
KS ci ratio: 2.639942e-01	ci left: 1.909795e-03	ci right 2.499674e-03	k: 219	n:100000
GRID1   100000 perm   27 sec   (3763 perm/sec)   p_kst 2.190000e-03   p_cons 2.363400e-01   p_joint 9.500000e-03

Joint ci ratio: 1.922937e-01	ci left: 3.401716e-03	ci right 4.133922e-03	k: 413	n:110000
Cons ci ratio: 2.129200e-02	ci left: 2.330403e-01	ci right 2.380646e-01	k: 25910	n:110000
KS ci ratio: 2.646240e-01	ci left: 1.727666e-03	ci right 2.262773e-03	k: 218	n:110000
GRID1   110000 perm   30 sec   (3697 perm/sec)   p_kst 1.981818e-03   p_cons 2.355455e-01   p_joint 3.754545e-03

Joint ci ratio: 1.886994e-01	ci left: 3.245189e-03	ci right 3.929147e-03	k: 429	n:120000
Cons ci ratio: 2.038108e-02	ci left: 2.332261e-01	ci right 2.380367e-01	k: 28275	n:120000
KS ci ratio: 2.543787e-01	ci left: 1.723940e-03	ci right 2.233942e-03	k: 236	n:120000
GRID1   120000 perm   33 sec   (3650 perm/sec)   p_kst 1.966667e-03   p_cons 2.356250e-01   p_joint 3.575000e-03

Joint ci ratio: 2.005324e-01	ci left: 2.636899e-03	ci right 3.231770e-03	k: 380	n:130000
Cons ci ratio: 1.968339e-02	ci left: 2.314630e-01	ci right 2.360719e-01	k: 30389	n:130000
KS ci ratio: 2.476831e-01	ci left: 1.685034e-03	ci right 2.168385e-03	k: 249	n:130000
GRID1   130000 perm   36 sec   (3599 perm/sec)   p_kst 1.915385e-03   p_cons 2.337615e-01   p_joint 2.923077e-03

Joint ci ratio: 1.683637e-01	ci left: 3.532344e-03	ci right 4.188468e-03	k: 539	n:140000
Cons ci ratio: 1.893858e-02	ci left: 2.320904e-01	ci right 2.365349e-01	k: 32803	n:140000
KS ci ratio: 2.352960e-01	ci left: 1.745876e-03	ci right 2.217990e-03	k: 276	n:140000
GRID1   140000 perm   39 sec   (3546 perm/sec)   p_kst 1.971429e-03   p_cons 2.343071e-01   p_joint 3.850000e-03

Joint ci ratio: 1.517879e-01	ci left: 4.090576e-03	ci right 4.768799e-03	k: 663	n:150000
Cons ci ratio: 1.860004e-02	ci left: 2.263306e-01	ci right 2.305865e-01	k: 34268	n:150000
KS ci ratio: 2.283941e-01	ci left: 1.736235e-03	ci right 2.190029e-03	k: 293	n:150000
GRID1   150000 perm   43 sec   (3499 perm/sec)   p_kst 1.953333e-03   p_cons 2.284533e-01   p_joint 4.420000e-03

Joint ci ratio: 1.557442e-01	ci left: 3.636532e-03	ci right 4.256656e-03	k: 630	n:160000
Cons ci ratio: 1.799525e-02	ci left: 2.266750e-01	ci right 2.307973e-01	k: 36597	n:160000
KS ci ratio: 2.202987e-01	ci left: 1.757497e-03	ci right 2.198362e-03	k: 315	n:160000
GRID1   160000 perm   46 sec   (3454 perm/sec)   p_kst 1.968750e-03   p_cons 2.287312e-01   p_joint 3.937500e-03

Joint ci ratio: 1.521732e-01	ci left: 3.592285e-03	ci right 4.189536e-03	k: 660	n:170000
Cons ci ratio: 1.745894e-02	ci left: 2.267169e-01	ci right 2.307159e-01	k: 38881	n:170000
KS ci ratio: 2.142814e-01	ci left: 1.754236e-03	ci right 2.180682e-03	k: 333	n:170000
GRID1   170000 perm   50 sec   (3404 perm/sec)   p_kst 1.958824e-03   p_cons 2.287118e-01   p_joint 3.882353e-03

Joint ci ratio: 1.491623e-01	ci left: 3.537051e-03	ci right 4.112445e-03	k: 687	n:180000
Cons ci ratio: 1.699546e-02	ci left: 2.261853e-01	ci right 2.300679e-01	k: 41062	n:180000
KS ci ratio: 2.087317e-01	ci left: 1.751482e-03	ci right 2.164823e-03	k: 351	n:180000
GRID1   180000 perm   54 sec   (3358 perm/sec)   p_kst 1.950000e-03   p_cons 2.281222e-01   p_joint 3.816667e-03

Joint ci ratio: 1.510621e-01	ci left: 3.264742e-03	ci right 3.803212e-03	k: 670	n:190000
Cons ci ratio: 1.655461e-02	ci left: 2.259734e-01	ci right 2.297507e-01	k: 43293	n:190000
KS ci ratio: 2.016893e-01	ci left: 1.784121e-03	ci right 2.189210e-03	k: 376	n:190000
GRID1   190000 perm   57 sec   (3313 perm/sec)   p_kst 1.978947e-03   p_cons 2.278579e-01   p_joint 3.526316e-03

Joint ci ratio: 1.835628e-01	ci left: 2.066174e-03	ci right 2.488460e-03	k: 454	n:200000
Cons ci ratio: 1.563497e-02	ci left: 2.372669e-01	ci right 2.410107e-01	k: 47827	n:200000
KS ci ratio: 1.953148e-01	ci left: 1.813706e-03	ci right 2.210950e-03	k: 401	n:200000
GRID1   200000 perm   61 sec   (3270 perm/sec)   p_kst 2.005000e-03   p_cons 2.391350e-01   p_joint 2.270000e-03

Joint ci ratio: 1.833710e-01	ci left: 1.972319e-03	ci right 2.374954e-03	k: 455	n:210000
Cons ci ratio: 1.525705e-02	ci left: 2.373387e-01	ci right 2.409923e-01	k: 50224	n:210000
KS ci ratio: 1.904044e-01	ci left: 1.822512e-03	ci right 2.210488e-03	k: 422	n:210000
GRID1   210000 perm   65 sec   (3228 perm/sec)   p_kst 2.009524e-03   p_cons 2.391619e-01   p_joint 2.166667e-03

Joint ci ratio: 1.510986e-01	ci left: 2.819500e-03	ci right 3.284655e-03	k: 670	n:220000
Cons ci ratio: 1.489820e-02	ci left: 2.375773e-01	ci right 2.411478e-01	k: 52659	n:220000
KS ci ratio: 1.864791e-01	ci left: 1.817628e-03	ci right 2.195685e-03	k: 440	n:220000
GRID1   220000 perm   69 sec   (3187 perm/sec)   p_kst 2.000000e-03   p_cons 2.393591e-01   p_joint 3.045455e-03

Joint ci ratio: 1.473042e-01	ci left: 2.843409e-03	ci right 3.299691e-03	k: 705	n:230000
Cons ci ratio: 1.456858e-02	ci left: 2.376702e-01	ci right 2.411624e-01	k: 55065	n:230000
KS ci ratio: 1.825877e-01	ci left: 1.817394e-03	ci right 2.186641e-03	k: 459	n:230000
GRID1   230000 perm   73 sec   (3147 perm/sec)   p_kst 1.995652e-03   p_cons 2.394130e-01   p_joint 3.065217e-03

Joint ci ratio: 1.445669e-01	ci left: 2.833325e-03	ci right 3.278810e-03	k: 732	n:240000
Cons ci ratio: 1.426187e-02	ci left: 2.377063e-01	ci right 2.411249e-01	k: 57459	n:240000
KS ci ratio: 1.791176e-01	ci left: 1.813274e-03	ci right 2.173923e-03	k: 477	n:240000
GRID1   240000 perm   77 sec   (3108 perm/sec)   p_kst 1.987500e-03   p_cons 2.394125e-01   p_joint 3.050000e-03

Joint ci ratio: 1.419768e-01	ci left: 2.824120e-03	ci right 3.259528e-03	k: 759	n:250000
Cons ci ratio: 1.396791e-02	ci left: 2.378919e-01	ci right 2.412421e-01	k: 59891	n:250000
KS ci ratio: 1.749568e-01	ci left: 1.828668e-03	ci right 2.183037e-03	k: 500	n:250000
GRID1   250000 perm   81 sec   (3072 perm/sec)   p_kst 2.000000e-03   p_cons 2.395640e-01   p_joint 3.036000e-03

Joint ci ratio: 1.441900e-01	ci left: 2.630186e-03	ci right 3.042559e-03	k: 736	n:260000
Cons ci ratio: 1.369763e-02	ci left: 2.378989e-01	ci right 2.411838e-01	k: 62280	n:260000
KS ci ratio: 1.715658e-01	ci left: 1.831922e-03	ci right 2.179329e-03	k: 520	n:260000
GRID1   260000 perm   86 sec   (3037 perm/sec)   p_kst 2.000000e-03   p_cons 2.395385e-01   p_joint 2.830769e-03

Joint ci ratio: 1.421805e-01	ci left: 2.607761e-03	ci right 3.010437e-03	k: 757	n:270000
Cons ci ratio: 1.344587e-02	ci left: 2.378136e-01	ci right 2.410365e-01	k: 64644	n:270000
KS ci ratio: 1.686774e-01	ci left: 1.827901e-03	ci right 2.168116e-03	k: 538	n:270000
GRID1   270000 perm   90 sec   (3003 perm/sec)   p_kst 1.992593e-03   p_cons 2.394222e-01   p_joint 2.803704e-03

Joint ci ratio: 1.407976e-01	ci left: 2.566297e-03	ci right 2.958393e-03	k: 772	n:280000
Cons ci ratio: 1.320505e-02	ci left: 2.378025e-01	ci right 2.409671e-01	k: 67027	n:280000
KS ci ratio: 1.648952e-01	ci left: 1.848179e-03	ci right 2.183691e-03	k: 563	n:280000
GRID1   280000 perm   94 sec   (2970 perm/sec)   p_kst 2.010714e-03   p_cons 2.393821e-01   p_joint 2.757143e-03

Joint ci ratio: 1.412631e-01	ci left: 2.461162e-03	ci right 2.838542e-03	k: 767	n:290000
Cons ci ratio: 1.297904e-02	ci left: 2.377274e-01	ci right 2.408364e-01	k: 69391	n:290000
KS ci ratio: 1.613564e-01	ci left: 1.867138e-03	ci right 2.198112e-03	k: 588	n:290000
GRID1   290000 perm   99 sec   (2937 perm/sec)   p_kst 2.027586e-03   p_cons 2.392793e-01   p_joint 2.644828e-03

Joint ci ratio: 1.397274e-01	ci left: 2.433796e-03	ci right 2.802584e-03	k: 784	n:300000
Cons ci ratio: 1.275445e-02	ci left: 2.379371e-01	ci right 2.409946e-01	k: 71839	n:300000
KS ci ratio: 1.580361e-01	ci left: 1.884905e-03	ci right 2.211501e-03	k: 613	n:300000
GRID1   300000 perm   104 sec   (2895 perm/sec)   p_kst 2.043333e-03   p_cons 2.394633e-01   p_joint 2.613333e-03

Joint ci ratio: 1.371308e-01	ci left: 2.448710e-03	ci right 2.812300e-03	k: 814	n:310000
Cons ci ratio: 1.255057e-02	ci left: 2.378601e-01	ci right 2.408674e-01	k: 74202	n:310000
KS ci ratio: 1.555236e-01	ci left: 1.886087e-03	ci right 2.207207e-03	k: 633	n:310000
GRID1   310000 perm   108 sec   (2860 perm/sec)   p_kst 2.041935e-03   p_cons 2.393613e-01   p_joint 2.625806e-03

Joint ci ratio: 1.354799e-01	ci left: 2.432555e-03	ci right 2.789048e-03	k: 834	n:320000
Cons ci ratio: 1.234736e-02	ci left: 2.380471e-01	ci right 2.410077e-01	k: 76648	n:320000
KS ci ratio: 1.525440e-01	ci left: 1.902262e-03	ci right 2.219364e-03	k: 658	n:320000
GRID1   320000 perm   113 sec   (2830 perm/sec)   p_kst 2.056250e-03   p_cons 2.395250e-01   p_joint 2.606250e-03

Joint ci ratio: 1.337305e-01	ci left: 2.423262e-03	ci right 2.773442e-03	k: 856	n:330000
Cons ci ratio: 1.216120e-02	ci left: 2.379993e-01	ci right 2.409144e-01	k: 79020	n:330000
KS ci ratio: 1.502807e-01	ci left: 1.902927e-03	ci right 2.215011e-03	k: 678	n:330000
GRID1   330000 perm   118 sec   (2801 perm/sec)   p_kst 2.054545e-03   p_cons 2.394545e-01   p_joint 2.593939e-03

Joint ci ratio: 1.337356e-01	ci left: 2.351984e-03	ci right 2.691878e-03	k: 856	n:340000
Cons ci ratio: 1.197982e-02	ci left: 2.380574e-01	ci right 2.409294e-01	k: 81427	n:340000
KS ci ratio: 1.480093e-01	ci left: 1.906419e-03	ci right 2.213932e-03	k: 699	n:340000
GRID1   340000 perm   123 sec   (2773 perm/sec)   p_kst 2.055882e-03   p_cons 2.394912e-01   p_joint 2.517647e-03

Joint ci ratio: 1.166317e-01	ci left: 3.029456e-03	ci right 3.407414e-03	k: 1125	n:350000
Cons ci ratio: 1.181327e-02	ci left: 2.378987e-01	ci right 2.407285e-01	k: 83759	n:350000
KS ci ratio: 1.464497e-01	ci left: 1.893227e-03	ci right 2.195112e-03	k: 714	n:350000
GRID1   350000 perm   128 sec   (2745 perm/sec)   p_kst 2.040000e-03   p_cons 2.393114e-01   p_joint 3.214286e-03

Joint ci ratio: 1.149591e-01	ci left: 3.034317e-03	ci right 3.407084e-03	k: 1158	n:360000
Cons ci ratio: 1.164512e-02	ci left: 2.380096e-01	ci right 2.408002e-01	k: 86185	n:360000
KS ci ratio: 1.442470e-01	ci left: 1.899527e-03	ci right 2.197469e-03	k: 736	n:360000
GRID1   360000 perm   132 sec   (2717 perm/sec)   p_kst 2.044444e-03   p_cons 2.394028e-01   p_joint 3.216667e-03

Joint ci ratio: 1.172176e-01	ci left: 2.836825e-03	ci right 3.192650e-03	k: 1114	n:370000
Cons ci ratio: 1.149282e-02	ci left: 2.378342e-01	ci right 2.405861e-01	k: 88507	n:370000
KS ci ratio: 1.423288e-01	ci left: 1.900304e-03	ci right 2.194068e-03	k: 756	n:370000
GRID1   370000 perm   138 sec   (2690 perm/sec)   p_kst 2.043243e-03   p_cons 2.392081e-01   p_joint 3.010811e-03

Joint ci ratio: 1.169595e-01	ci left: 2.774939e-03	ci right 3.122183e-03	k: 1119	n:380000
Cons ci ratio: 1.133864e-02	ci left: 2.379152e-01	ci right 2.406308e-01	k: 90923	n:380000
KS ci ratio: 1.399448e-01	ci left: 1.916302e-03	ci right 2.207164e-03	k: 782	n:380000
GRID1   380000 perm   143 sec   (2664 perm/sec)   p_kst 2.057895e-03   p_cons 2.392711e-01   p_joint 2.944737e-03

Joint ci ratio: 1.084561e-01	ci left: 3.157348e-03	ci right 3.521887e-03	k: 1301	n:390000
Cons ci ratio: 1.119089e-02	ci left: 2.379795e-01	ci right 2.406602e-01	k: 93334	n:390000
KS ci ratio: 1.380190e-01	ci left: 1.921616e-03	ci right 2.208940e-03	k: 804	n:390000
GRID1   390000 perm   148 sec   (2637 perm/sec)   p_kst 2.061538e-03   p_cons 2.393179e-01   p_joint 3.335897e-03

Joint ci ratio: 1.074307e-01	ci left: 3.139225e-03	ci right 3.498029e-03	k: 1326	n:400000
Cons ci ratio: 1.106053e-02	ci left: 2.376541e-01	ci right 2.402997e-01	k: 95590	n:400000
KS ci ratio: 1.361706e-01	ci left: 1.926689e-03	ci right 2.210601e-03	k: 826	n:400000
GRID1   400000 perm   153 sec   (2610 perm/sec)   p_kst 2.065000e-03   p_cons 2.389750e-01   p_joint 3.315000e-03

Joint ci ratio: 1.076387e-01	ci left: 3.050784e-03	ci right 3.400197e-03	k: 1321	n:410000
Cons ci ratio: 1.092216e-02	ci left: 2.377585e-01	ci right 2.403720e-01	k: 98016	n:410000
KS ci ratio: 1.348729e-01	ci left: 1.917397e-03	ci right 2.197032e-03	k: 842	n:410000
GRID1   410000 perm   159 sec   (2584 perm/sec)   p_kst 2.053659e-03   p_cons 2.390634e-01   p_joint 3.221951e-03

Joint ci ratio: 1.080536e-01	ci left: 2.954972e-03	ci right 3.294798e-03	k: 1311	n:420000
Cons ci ratio: 1.079458e-02	ci left: 2.376657e-01	ci right 2.402474e-01	k: 100361	n:420000
KS ci ratio: 1.336117e-01	ci left: 1.908560e-03	ci right 2.184096e-03	k: 858	n:420000
GRID1   420000 perm   164 sec   (2559 perm/sec)   p_kst 2.042857e-03   p_cons 2.389548e-01   p_joint 3.121429e-03

Joint ci ratio: 1.008014e-01	ci left: 3.327940e-03	ci right 3.683453e-03	k: 1506	n:430000
Cons ci ratio: 1.066843e-02	ci left: 2.376772e-01	ci right 2.402287e-01	k: 102749	n:430000
KS ci ratio: 1.320077e-01	ci left: 1.911390e-03	ci right 2.183762e-03	k: 879	n:430000
GRID1   430000 perm   170 sec   (2536 perm/sec)   p_kst 2.044186e-03   p_cons 2.389512e-01   p_joint 3.502326e-03

Joint ci ratio: 1.021402e-01	ci left: 3.165905e-03	ci right 3.508869e-03	k: 1467	n:440000
Cons ci ratio: 1.054344e-02	ci left: 2.377972e-01	ci right 2.403199e-01	k: 105185	n:440000
KS ci ratio: 1.302431e-01	ci left: 1.920706e-03	ci right 2.190464e-03	k: 903	n:440000
GRID1   440000 perm   175 sec   (2511 perm/sec)   p_kst 2.052273e-03   p_cons 2.390568e-01   p_joint 3.334091e-03

Joint ci ratio: 1.030638e-01	ci left: 3.039246e-03	ci right 3.371646e-03	k: 1441	n:450000
Cons ci ratio: 1.042822e-02	ci left: 2.377213e-01	ci right 2.402154e-01	k: 107535	n:450000
KS ci ratio: 1.293884e-01	ci left: 1.903823e-03	ci right 2.169320e-03	k: 915	n:450000
GRID1   450000 perm   181 sec   (2490 perm/sec)   p_kst 2.033333e-03   p_cons 2.389667e-01   p_joint 3.202222e-03

Joint ci ratio: 8.385458e-02	ci left: 4.529930e-03	ci right 4.928521e-03	k: 2174	n:460000
Cons ci ratio: 1.031626e-02	ci left: 2.376640e-01	ci right 2.401306e-01	k: 109892	n:460000
KS ci ratio: 1.228453e-01	ci left: 2.072984e-03	ci right 2.346390e-03	k: 1015	n:460000
GRID1   460000 perm   187 sec   (2466 perm/sec)   p_kst 2.206522e-03   p_cons 2.388957e-01   p_joint 4.726087e-03

Joint ci ratio: 8.777614e-02	ci left: 4.040001e-03	ci right 4.412960e-03	k: 1985	n:470000
Cons ci ratio: 1.020789e-02	ci left: 2.376071e-01	ci right 2.400471e-01	k: 112248	n:470000
KS ci ratio: 1.215952e-01	ci left: 2.072193e-03	ci right 2.342513e-03	k: 1036	n:470000
GRID1   470000 perm   192 sec   (2443 perm/sec)   p_kst 2.204255e-03   p_cons 2.388255e-01   p_joint 4.223404e-03

Joint ci ratio: 8.669094e-02	ci left: 4.057731e-03	ci right 4.427460e-03	k: 2035	n:480000
Cons ci ratio: 1.010299e-02	ci left: 2.375487e-01	ci right 2.399628e-01	k: 114602	n:480000
KS ci ratio: 1.202119e-01	ci left: 2.077510e-03	ci right 2.345222e-03	k: 1060	n:480000
GRID1   480000 perm   198 sec   (2420 perm/sec)   p_kst 2.208333e-03   p_cons 2.387542e-01   p_joint 4.239583e-03

Joint ci ratio: 8.587269e-02	ci left: 4.052794e-03	ci right 4.418413e-03	k: 2074	n:490000
Cons ci ratio: 1.000069e-02	ci left: 2.375131e-01	ci right 2.399023e-01	k: 116966	n:490000
KS ci ratio: 1.193719e-01	ci left: 2.064806e-03	ci right 2.328890e-03	k: 1075	n:490000
GRID1   490000 perm   204 sec   (2397 perm/sec)   p_kst 2.193878e-03   p_cons 2.387061e-01   p_joint 4.232653e-03

Joint ci ratio: 9.251286e-02	ci left: 3.412426e-03	ci right 3.745368e-03	k: 1788	n:500000
Cons ci ratio: 9.598874e-03	ci left: 2.489200e-01	ci right 2.513229e-01	k: 125060	n:500000
KS ci ratio: 1.183863e-01	ci left: 2.058439e-03	ci right 2.319383e-03	k: 1093	n:500000
GRID1   500000 perm   210 sec   (2376 perm/sec)   p_kst 2.186000e-03   p_cons 2.501200e-01   p_joint 3.576000e-03

Joint ci ratio: 9.262009e-02	ci left: 3.337848e-03	ci right 3.663911e-03	k: 1784	n:510000
Cons ci ratio: 9.505356e-03	ci left: 2.488903e-01	ci right 2.512694e-01	k: 127540	n:510000
KS ci ratio: 1.172662e-01	ci left: 2.058040e-03	ci right 2.316295e-03	k: 1114	n:510000
GRID1   510000 perm   216 sec   (2356 perm/sec)   p_kst 2.184314e-03   p_cons 2.500784e-01   p_joint 3.498039e-03

Joint ci ratio: 9.320131e-02	ci left: 3.232326e-03	ci right 3.550170e-03	k: 1762	n:520000
Cons ci ratio: 9.411526e-03	ci left: 2.489810e-01	ci right 2.513372e-01	k: 130082	n:520000
KS ci ratio: 1.162800e-01	ci left: 2.053934e-03	ci right 2.309356e-03	k: 1133	n:520000
GRID1   520000 perm   223 sec   (2335 perm/sec)   p_kst 2.178846e-03   p_cons 2.501577e-01   p_joint 3.388462e-03

Joint ci ratio: 8.766441e-02	ci left: 3.593679e-03	ci right 3.924989e-03	k: 1991	n:530000
Cons ci ratio: 9.321453e-03	ci left: 2.490268e-01	ci right 2.513608e-01	k: 132602	n:530000
KS ci ratio: 1.153684e-01	ci left: 2.048158e-03	ci right 2.300729e-03	k: 1151	n:530000
GRID1   530000 perm   229 sec   (2315 perm/sec)   p_kst 2.171698e-03   p_cons 2.501925e-01   p_joint 3.756604e-03

Joint ci ratio: 8.740363e-02	ci left: 3.548862e-03	ci right 3.875017e-03	k: 2003	n:540000
Cons ci ratio: 9.231776e-03	ci left: 2.491580e-01	ci right 2.514706e-01	k: 135169	n:540000
KS ci ratio: 1.145270e-01	ci left: 2.040805e-03	ci right 2.290510e-03	k: 1168	n:540000
GRID1   540000 perm   235 sec   (2295 perm/sec)   p_kst 2.162963e-03   p_cons 2.503130e-01   p_joint 3.709259e-03

Joint ci ratio: 8.818283e-02	ci left: 3.422088e-03	ci right 3.739540e-03	k: 1968	n:550000
Cons ci ratio: 9.147871e-03	ci left: 2.491519e-01	ci right 2.514434e-01	k: 137663	n:550000
KS ci ratio: 1.134165e-01	ci left: 2.044326e-03	ci right 2.291874e-03	k: 1191	n:550000
GRID1   550000 perm   242 sec   (2274 perm/sec)   p_kst 2.165455e-03   p_cons 2.502964e-01   p_joint 3.578182e-03

Joint ci ratio: 8.754106e-02	ci left: 3.411626e-03	ci right 3.725687e-03	k: 1997	n:560000
Cons ci ratio: 9.068759e-03	ci left: 2.490410e-01	ci right 2.513116e-01	k: 140098	n:560000
KS ci ratio: 1.126635e-01	ci left: 2.035583e-03	ci right 2.280327e-03	k: 1207	n:560000
GRID1   560000 perm   248 sec   (2255 perm/sec)   p_kst 2.155357e-03   p_cons 2.501750e-01   p_joint 3.566071e-03

Joint ci ratio: 8.674148e-02	ci left: 3.415271e-03	ci right 3.726650e-03	k: 2034	n:570000
Cons ci ratio: 8.989141e-03	ci left: 2.490392e-01	ci right 2.512897e-01	k: 142593	n:570000
KS ci ratio: 1.116969e-01	ci left: 2.035679e-03	ci right 2.278197e-03	k: 1228	n:570000
GRID1   570000 perm   255 sec   (2234 perm/sec)   p_kst 2.154386e-03   p_cons 2.501632e-01   p_joint 3.568421e-03

Joint ci ratio: 8.631952e-02	ci left: 3.390122e-03	ci right 3.697629e-03	k: 2054	n:580000
Cons ci ratio: 8.911584e-03	ci left: 2.490375e-01	ci right 2.512684e-01	k: 145088	n:580000
KS ci ratio: 1.106218e-01	ci left: 2.040811e-03	ci right 2.281447e-03	k: 1252	n:580000
GRID1   580000 perm   262 sec   (2215 perm/sec)   p_kst 2.158621e-03   p_cons 2.501517e-01   p_joint 3.541379e-03

Joint ci ratio: 8.478334e-02	ci left: 3.457066e-03	ci right 3.764789e-03	k: 2129	n:590000
Cons ci ratio: 8.833446e-03	ci left: 2.491443e-01	ci right 2.513565e-01	k: 147647	n:590000
KS ci ratio: 1.097495e-01	ci left: 2.039185e-03	ci right 2.277610e-03	k: 1272	n:590000
GRID1   590000 perm   269 sec   (2197 perm/sec)   p_kst 2.155932e-03   p_cons 2.502492e-01   p_joint 3.608475e-03

Joint ci ratio: 8.500647e-02	ci left: 3.381499e-03	ci right 3.683326e-03	k: 2118	n:600000
Cons ci ratio: 8.762502e-03	ci left: 2.490262e-01	ci right 2.512195e-01	k: 150073	n:600000
KS ci ratio: 1.089820e-01	ci left: 2.034377e-03	ci right 2.270471e-03	k: 1290	n:600000
GRID1   600000 perm   275 sec   (2178 perm/sec)   p_kst 2.150000e-03   p_cons 2.501217e-01   p_joint 3.530000e-03

Joint ci ratio: 8.119447e-02	ci left: 3.651959e-03	ci right 3.962619e-03	k: 2321	n:610000
Cons ci ratio: 8.685342e-03	ci left: 2.492526e-01	ci right 2.514285e-01	k: 152707	n:610000
KS ci ratio: 1.081477e-01	ci left: 2.032923e-03	ci right 2.266927e-03	k: 1310	n:610000
GRID1   610000 perm   282 sec   (2161 perm/sec)   p_kst 2.147541e-03   p_cons 2.503393e-01   p_joint 3.804918e-03

Joint ci ratio: 8.137304e-02	ci left: 3.577250e-03	ci right 3.882255e-03	k: 2311	n:620000
Cons ci ratio: 8.617326e-03	ci left: 2.491609e-01	ci right 2.513189e-01	k: 155148	n:620000
KS ci ratio: 1.068107e-01	ci left: 2.051930e-03	ci right 2.285019e-03	k: 1343	n:620000
GRID1   620000 perm   289 sec   (2144 perm/sec)   p_kst 2.166129e-03   p_cons 2.502387e-01   p_joint 3.727419e-03

Joint ci ratio: 8.048925e-02	ci left: 3.599784e-03	ci right 3.903220e-03	k: 2362	n:630000
Cons ci ratio: 8.548205e-03	ci left: 2.491895e-01	ci right 2.513303e-01	k: 157663	n:630000
KS ci ratio: 1.059471e-01	ci left: 2.053352e-03	ci right 2.284598e-03	k: 1365	n:630000
GRID1   630000 perm   296 sec   (2127 perm/sec)   p_kst 2.166667e-03   p_cons 2.502587e-01   p_joint 3.749206e-03

Joint ci ratio: 8.049161e-02	ci left: 3.543533e-03	ci right 3.842237e-03	k: 2362	n:640000
Cons ci ratio: 8.480439e-03	ci left: 2.492297e-01	ci right 2.513538e-01	k: 160186	n:640000
KS ci ratio: 1.054472e-01	ci left: 2.041043e-03	ci right 2.269751e-03	k: 1378	n:640000
GRID1   640000 perm   303 sec   (2110 perm/sec)   p_kst 2.153125e-03   p_cons 2.502906e-01   p_joint 3.690625e-03

Joint ci ratio: 7.996914e-02	ci left: 3.535752e-03	ci right 3.831776e-03	k: 2393	n:650000
Cons ci ratio: 8.414777e-03	ci left: 2.492457e-01	ci right 2.513534e-01	k: 162694	n:650000
KS ci ratio: 1.046909e-01	ci left: 2.039603e-03	ci right 2.266409e-03	k: 1398	n:650000
GRID1   650000 perm   311 sec   (2093 perm/sec)   p_kst 2.150769e-03   p_cons 2.502985e-01   p_joint 3.681538e-03

Joint ci ratio: 8.010582e-02	ci left: 3.470297e-03	ci right 3.761360e-03	k: 2385	n:660000
Cons ci ratio: 8.353180e-03	ci left: 2.491463e-01	ci right 2.512377e-01	k: 165126	n:660000
KS ci ratio: 1.036218e-01	ci left: 2.051495e-03	ci right 2.277153e-03	k: 1427	n:660000
GRID1   660000 perm   318 sec   (2078 perm/sec)   p_kst 2.162121e-03   p_cons 2.501909e-01   p_joint 3.613636e-03

Joint ci ratio: 7.939320e-02	ci left: 3.481401e-03	ci right 3.770678e-03	k: 2428	n:670000
Cons ci ratio: 8.289089e-03	ci left: 2.492228e-01	ci right 2.512987e-01	k: 167674	n:670000
KS ci ratio: 1.027972e-01	ci left: 2.054318e-03	ci right 2.278379e-03	k: 1450	n:670000
GRID1   670000 perm   325 sec   (2063 perm/sec)   p_kst 2.164179e-03   p_cons 2.502597e-01   p_joint 3.623881e-03

Joint ci ratio: 7.877927e-02	ci left: 3.484981e-03	ci right 3.772214e-03	k: 2466	n:680000
Cons ci ratio: 8.226773e-03	ci left: 2.492825e-01	ci right 2.513432e-01	k: 170212	n:680000
KS ci ratio: 1.021657e-01	ci left: 2.049899e-03	ci right 2.272023e-03	k: 1468	n:680000
GRID1   680000 perm   332 sec   (2047 perm/sec)   p_kst 2.158824e-03   p_cons 2.503118e-01   p_joint 3.626471e-03

Joint ci ratio: 7.819503e-02	ci left: 3.487045e-03	ci right 3.772219e-03	k: 2503	n:690000
Cons ci ratio: 8.167860e-03	ci left: 2.492478e-01	ci right 2.512934e-01	k: 172686	n:690000
KS ci ratio: 1.013751e-01	ci left: 2.052676e-03	ci right 2.273276e-03	k: 1491	n:690000
GRID1   690000 perm   340 sec   (2032 perm/sec)   p_kst 2.160870e-03   p_cons 2.502696e-01   p_joint 3.627536e-03

Joint ci ratio: 7.774652e-02	ci left: 3.477851e-03	ci right 3.760568e-03	k: 2532	n:700000
Cons ci ratio: 8.110627e-03	ci left: 2.491942e-01	ci right 2.512250e-01	k: 175146	n:700000
KS ci ratio: 1.007359e-01	ci left: 2.049808e-03	ci right 2.268630e-03	k: 1510	n:700000
GRID1   700000 perm   347 sec   (2016 perm/sec)   p_kst 2.157143e-03   p_cons 2.502086e-01   p_joint 3.617143e-03

Joint ci ratio: 7.756434e-02	ci left: 3.445438e-03	ci right 3.724834e-03	k: 2544	n:710000
Cons ci ratio: 8.054097e-03	ci left: 2.491647e-01	ci right 2.511810e-01	k: 177622	n:710000
KS ci ratio: 1.000759e-01	ci left: 2.048400e-03	ci right 2.265554e-03	k: 1530	n:710000
GRID1   710000 perm   355 sec   (2001 perm/sec)   p_kst 2.154930e-03   p_cons 2.501718e-01   p_joint 3.583099e-03

Joint ci ratio: 7.687218e-02	ci left: 3.460241e-03	ci right 3.738221e-03	k: 2590	n:720000
Cons ci ratio: 7.997636e-03	ci left: 2.491874e-01	ci right 2.511896e-01	k: 180135	n:720000
KS ci ratio: 9.933243e-02	ci left: 2.051098e-03	ci right 2.266828e-03	k: 1553	n:720000
GRID1   720000 perm   362 sec   (1987 perm/sec)   p_kst 2.156944e-03   p_cons 2.501875e-01   p_joint 3.597222e-03

Outputting figure to mutsig2_images.part000000000075/GRID1.16_3094_720000_0.0021569_0.25019_0.0035972.png
                gene_name: GRID1
               theta_stop: 0.099 
                    nperm: 720000 
                     p_ks: 0.0022 
        ci_ks_bounds_left: 0.0021 
       ci_ks_bounds_right: 0.0023 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.0036 
     ci_joint_bounds_left: 0.0035 
    ci_joint_bounds_right: 0.0037 

Current progress: 9 percent done.
GRIK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.046495e-02	ci left: 6.138185e-01	ci right 6.329096e-01	k: 6234	n:10000
Cons ci ratio: 2.862992e-02	ci left: 6.426714e-01	ci right 6.614400e-01	k: 6521	n:10000
KS ci ratio: 5.342080e-02	ci left: 3.405470e-01	ci right 3.593405e-01	k: 3499	n:10000
GRIK2   10000 perm   2 sec   (4625 perm/sec)   p_kst 3.499000e-01   p_cons 6.521000e-01   p_joint 6.234000e-01

Outputting figure to mutsig2_images.part000000000075/GRIK2.14_2964_10000_0.3499_0.6521_0.6234.png
                gene_name: GRIK2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 11 percent done.
GRIA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.362865e-02	ci left: 4.368230e-01	ci right 4.564081e-01	k: 4466	n:10000
Cons ci ratio: 1.049122e-01	ci left: 1.160369e-01	ci right 1.289839e-01	k: 1224	n:10000
KS ci ratio: 2.463247e-02	ci left: 7.079580e-01	ci right 7.257155e-01	k: 7169	n:10000
GRIA2   10000 perm   2 sec   (5203 perm/sec)   p_kst 7.169000e-01   p_cons 1.224000e-01   p_joint 4.466000e-01

Joint ci ratio: 3.016011e-02	ci left: 4.509267e-01	ci right 4.647856e-01	k: 9157	n:20000
Cons ci ratio: 8.092443e-02	ci left: 1.007350e-01	ci right 1.092802e-01	k: 2099	n:20000
KS ci ratio: 1.719952e-02	ci left: 7.157340e-01	ci right 7.282014e-01	k: 14440	n:20000
GRIA2   20000 perm   4 sec   (4681 perm/sec)   p_kst 7.220000e-01   p_cons 1.049500e-01   p_joint 4.578500e-01

Outputting figure to mutsig2_images.part000000000075/GRIA2.13_2831_20000_0.722_0.10495_0.45785.png
                gene_name: GRIA2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 12 percent done.
GRID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.668181e-02	ci left: 8.394879e-01	ci right 8.537096e-01	k: 8467	n:10000
KS ci ratio: 1.646289e-02	ci left: 8.429516e-01	ci right 8.570439e-01	k: 8501	n:10000
GRID2   10000 perm   2 sec   (5026 perm/sec)   p_kst 8.501000e-01   p_cons 8.467000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GRID2.12_3088_10000_0.8501_0.8467_1.png
                gene_name: GRID2
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
GRIK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.326693e-02	ci left: 2.685418e-01	ci right 2.861881e-01	k: 2773	n:10000
Cons ci ratio: 4.348773e-02	ci left: 4.384192e-01	ci right 4.580110e-01	k: 4482	n:10000
KS ci ratio: 9.169905e-02	ci left: 1.473694e-01	ci right 1.616325e-01	k: 1544	n:10000
GRIK4   10000 perm   2 sec   (4729 perm/sec)   p_kst 1.544000e-01   p_cons 4.482000e-01   p_joint 2.773000e-01

Outputting figure to mutsig2_images.part000000000075/GRIK4.12_2947_10000_0.1544_0.4482_0.2773.png
                gene_name: GRIK4
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 16 percent done.
GRLF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.247362e-02	ci left: 4.500946e-01	ci right 4.697287e-01	k: 4599	n:10000
Cons ci ratio: 2.685829e-02	ci left: 6.712594e-01	ci right 6.896353e-01	k: 6805	n:10000
KS ci ratio: 6.665108e-02	ci left: 2.483582e-01	ci right 2.655836e-01	k: 2569	n:10000
GRLF1   10000 perm   2 sec   (4267 perm/sec)   p_kst 2.569000e-01   p_cons 6.805000e-01   p_joint 4.599000e-01

Outputting figure to mutsig2_images.part000000000075/GRLF1.12_4524_10000_0.2569_0.6805_0.4599.png
                gene_name: GRLF1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 18 percent done.
GRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.817290e-02	ci left: 5.033509e-01	ci right 5.230414e-01	k: 5132	n:10000
Cons ci ratio: 3.559658e-02	ci left: 5.381826e-01	ci right 5.577894e-01	k: 5480	n:10000
KS ci ratio: 4.805083e-02	ci left: 3.898806e-01	ci right 4.091780e-01	k: 3995	n:10000
GRM1   10000 perm   2 sec   (4692 perm/sec)   p_kst 3.995000e-01   p_cons 5.480000e-01   p_joint 5.132000e-01

Outputting figure to mutsig2_images.part000000000075/GRM1.12_3682_10000_0.3995_0.548_0.5132.png
                gene_name: GRM1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 20 percent done.
GRM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.123610e-01	ci left: 1.023714e-01	ci right 1.146577e-01	k: 1084	n:10000
Cons ci ratio: 2.086194e-01	ci left: 3.053425e-02	ci right 3.774046e-02	k: 340	n:10000
KS ci ratio: 4.019438e-02	ci left: 4.775582e-01	ci right 4.972492e-01	k: 4874	n:10000
GRM7   10000 perm   2 sec   (4760 perm/sec)   p_kst 4.874000e-01   p_cons 3.400000e-02   p_joint 1.084000e-01

Joint ci ratio: 8.656147e-02	ci left: 8.896023e-02	ci right 9.705854e-02	k: 1859	n:20000
Cons ci ratio: 1.413087e-01	ci left: 3.442644e-02	ci right 3.970925e-02	k: 740	n:20000
KS ci ratio: 2.857793e-02	ci left: 4.777514e-01	ci right 4.916531e-01	k: 9694	n:20000
GRM7   20000 perm   5 sec   (4353 perm/sec)   p_kst 4.847000e-01   p_cons 3.700000e-02   p_joint 9.295000e-02

Joint ci ratio: 6.687233e-02	ci left: 9.931964e-02	ci right 1.062242e-01	k: 3082	n:30000
Cons ci ratio: 1.193672e-01	ci left: 3.262511e-02	ci right 3.679896e-02	k: 1040	n:30000
KS ci ratio: 2.297303e-02	ci left: 4.868270e-01	ci right 4.981745e-01	k: 14775	n:30000
GRM7   30000 perm   7 sec   (4073 perm/sec)   p_kst 4.925000e-01   p_cons 3.466667e-02   p_joint 1.027333e-01

Joint ci ratio: 6.370399e-02	ci left: 8.371357e-02	ci right 8.924663e-02	k: 3458	n:40000
Cons ci ratio: 1.025366e-01	ci left: 3.343973e-02	ci right 3.707814e-02	k: 1409	n:40000
KS ci ratio: 1.981704e-02	ci left: 4.895634e-01	ci right 4.993874e-01	k: 19779	n:40000
GRM7   40000 perm   10 sec   (3990 perm/sec)   p_kst 4.944750e-01   p_cons 3.522500e-02   p_joint 8.645000e-02

Joint ci ratio: 4.738799e-02	ci left: 1.175200e-01	ci right 1.232441e-01	k: 6018	n:50000
Cons ci ratio: 9.410386e-02	ci left: 3.195948e-02	ci right 3.513498e-02	k: 1676	n:50000
KS ci ratio: 1.779377e-02	ci left: 4.881484e-01	ci right 4.969325e-01	k: 24627	n:50000
GRM7   50000 perm   13 sec   (3913 perm/sec)   p_kst 4.925400e-01   p_cons 3.352000e-02   p_joint 1.203600e-01

Outputting figure to mutsig2_images.part000000000075/GRM7.12_2863_50000_0.49254_0.03352_0.12036.png
                gene_name: GRM7
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 21 percent done.
GRM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.033322e-01	ci left: 1.192622e-01	ci right 1.323567e-01	k: 1257	n:10000
Cons ci ratio: 1.359049e-01	ci left: 7.155808e-02	ci right 8.209001e-02	k: 767	n:10000
KS ci ratio: 8.895677e-02	ci left: 1.553186e-01	ci right 1.698785e-01	k: 1625	n:10000
GRM5   10000 perm   2 sec   (4534 perm/sec)   p_kst 1.625000e-01   p_cons 7.670000e-02   p_joint 1.257000e-01

Joint ci ratio: 8.643344e-02	ci left: 8.920534e-02	ci right 9.731335e-02	k: 1864	n:20000
Cons ci ratio: 9.418845e-02	ci left: 7.593396e-02	ci right 8.348877e-02	k: 1593	n:20000
KS ci ratio: 6.278765e-02	ci left: 1.579546e-01	ci right 1.682436e-01	k: 3261	n:20000
GRM5   20000 perm   5 sec   (4150 perm/sec)   p_kst 1.630500e-01   p_cons 7.965000e-02   p_joint 9.320000e-02

Outputting figure to mutsig2_images.part000000000075/GRM5.11_3675_20000_0.16305_0.07965_0.0932.png
                gene_name: GRM5
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.097 

Current progress: 23 percent done.
GRIN2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.577984e-02	ci left: 3.212809e-01	ci right 3.398179e-01	k: 3305	n:10000
KS ci ratio: 1.689324e-02	ci left: 8.361272e-01	ci right 8.504722e-01	k: 8434	n:10000
GRIN2B   10000 perm   2 sec   (4565 perm/sec)   p_kst 8.434000e-01   p_cons 3.305000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GRIN2B.10_4503_10000_0.8434_0.3305_1.png
                gene_name: GRIN2B
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
GRM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.394432e-01	ci left: 2.296967e-02	ci right 2.931046e-02	k: 260	n:10000
Cons ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
KS ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
GRM6   10000 perm   2 sec   (5311 perm/sec)   p_kst 7.950000e-02   p_cons 6.310000e-02   p_joint 2.600000e-02

Joint ci ratio: 1.366820e-01	ci left: 3.679429e-02	ci right 4.224062e-02	k: 789	n:20000
Cons ci ratio: 1.059567e-01	ci left: 6.064653e-02	ci right 6.748089e-02	k: 1280	n:20000
KS ci ratio: 9.467332e-02	ci left: 7.520025e-02	ci right 8.272270e-02	k: 1578	n:20000
GRM6   20000 perm   4 sec   (4784 perm/sec)   p_kst 7.890000e-02   p_cons 6.400000e-02   p_joint 3.945000e-02

Joint ci ratio: 1.278863e-01	ci left: 2.842155e-02	ci right 3.233676e-02	k: 910	n:30000
Cons ci ratio: 8.623851e-02	ci left: 6.164798e-02	ci right 6.723674e-02	k: 1932	n:30000
KS ci ratio: 7.681783e-02	ci left: 7.679047e-02	ci right 8.295785e-02	k: 2395	n:30000
GRM6   30000 perm   7 sec   (4581 perm/sec)   p_kst 7.983333e-02   p_cons 6.440000e-02   p_joint 3.033333e-02

Joint ci ratio: 8.256173e-02	ci left: 5.114316e-02	ci right 5.557197e-02	k: 2133	n:40000
Cons ci ratio: 7.691553e-02	ci left: 5.862494e-02	ci right 6.333904e-02	k: 2438	n:40000
KS ci ratio: 6.709489e-02	ci left: 7.598089e-02	ci right 8.128047e-02	k: 3144	n:40000
GRM6   40000 perm   9 sec   (4450 perm/sec)   p_kst 7.860000e-02   p_cons 6.095000e-02   p_joint 5.332500e-02

Outputting figure to mutsig2_images.part000000000075/GRM6.10_2674_40000_0.0786_0.06095_0.053325.png
                gene_name: GRM6
               theta_stop: 0.083 
                    nperm: 40000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.056 

Current progress: 27 percent done.
GRM8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.188850e-02	ci left: 4.569827e-01	ci right 4.766367e-01	k: 4668	n:10000
Cons ci ratio: 9.786555e-03	ci left: 9.366165e-01	ci right 9.459244e-01	k: 9414	n:10000
KS ci ratio: 5.440970e-02	ci left: 3.323022e-01	ci right 3.509901e-01	k: 3416	n:10000
GRM8   10000 perm   2 sec   (5025 perm/sec)   p_kst 3.416000e-01   p_cons 9.414000e-01   p_joint 4.668000e-01

Outputting figure to mutsig2_images.part000000000075/GRM8.9_2817_10000_0.3416_0.9414_0.4668.png
                gene_name: GRM8
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 29 percent done.
GRIA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.025127e-02	ci left: 6.171342e-01	ci right 6.361919e-01	k: 6267	n:10000
Cons ci ratio: 2.265589e-02	ci left: 7.409867e-01	ci right 7.580678e-01	k: 7496	n:10000
KS ci ratio: 3.859523e-02	ci left: 4.978503e-01	ci right 5.175452e-01	k: 5077	n:10000
GRIA3   10000 perm   2 sec   (5268 perm/sec)   p_kst 5.077000e-01   p_cons 7.496000e-01   p_joint 6.267000e-01

Outputting figure to mutsig2_images.part000000000075/GRIA3.8_2864_10000_0.5077_0.7496_0.6267.png
                gene_name: GRIA3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 30 percent done.
GRIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.447756e-01	ci left: 6.333545e-02	ci right 7.331780e-02	k: 682	n:10000
Cons ci ratio: 1.125939e-01	ci left: 1.019814e-01	ci right 1.142479e-01	k: 1080	n:10000
KS ci ratio: 9.659224e-02	ci left: 1.345280e-01	ci right 1.482816e-01	k: 1413	n:10000
GRIP1   10000 perm   2 sec   (4771 perm/sec)   p_kst 1.413000e-01   p_cons 1.080000e-01   p_joint 6.820000e-02

Joint ci ratio: 8.184185e-02	ci left: 9.867308e-02	ci right 1.071428e-01	k: 2057	n:20000
Cons ci ratio: 8.058186e-02	ci left: 1.015206e-01	ci right 1.100944e-01	k: 2115	n:20000
KS ci ratio: 6.734817e-02	ci left: 1.399499e-01	ci right 1.497536e-01	k: 2896	n:20000
GRIP1   20000 perm   5 sec   (4333 perm/sec)   p_kst 1.448000e-01   p_cons 1.057500e-01   p_joint 1.028500e-01

Outputting figure to mutsig2_images.part000000000075/GRIP1.8_3327_20000_0.1448_0.10575_0.10285.png
                gene_name: GRIP1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.11 

Current progress: 32 percent done.
GSK3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.800946e-02	ci left: 1.311004e-01	ci right 1.447113e-01	k: 1378	n:10000
Cons ci ratio: 9.764019e-02	ci left: 1.319816e-01	ci right 1.456295e-01	k: 1387	n:10000
KS ci ratio: 8.043957e-02	ci left: 1.841239e-01	ci right 1.996560e-01	k: 1918	n:10000
GSK3B   10000 perm   2 sec   (5187 perm/sec)   p_kst 1.918000e-01   p_cons 1.387000e-01   p_joint 1.378000e-01

Outputting figure to mutsig2_images.part000000000075/GSK3B.8_1350_10000_0.1918_0.1387_0.1378.png
                gene_name: GSK3B
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 34 percent done.
GRIPAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.309032e-02	ci left: 7.337090e-01	ci right 7.509496e-01	k: 7424	n:10000
Cons ci ratio: 2.378481e-02	ci left: 7.220913e-01	ci right 7.395740e-01	k: 7309	n:10000
KS ci ratio: 3.423102e-02	ci left: 5.575209e-01	ci right 5.770399e-01	k: 5673	n:10000
GRIPAP1   10000 perm   2 sec   (5638 perm/sec)   p_kst 5.673000e-01   p_cons 7.309000e-01   p_joint 7.424000e-01

Outputting figure to mutsig2_images.part000000000075/GRIPAP1.7_2684_10000_0.5673_0.7309_0.7424.png
                gene_name: GRIPAP1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 36 percent done.
GRM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.321963e-02	ci left: 2.688388e-01	ci right 2.864909e-01	k: 2776	n:10000
KS ci ratio: 7.756954e-03	ci left: 9.584845e-01	ci right 9.660432e-01	k: 9624	n:10000
GRM3   10000 perm   2 sec   (5165 perm/sec)   p_kst 9.624000e-01   p_cons 2.776000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GRM3.7_2660_10000_0.9624_0.2776_1.png
                gene_name: GRM3
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
GRM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.164184e-02	ci left: 7.579801e-01	ci right 7.746645e-01	k: 7664	n:10000
KS ci ratio: 5.350728e-03	ci left: 9.789852e-01	ci right 9.843289e-01	k: 9818	n:10000
GRM4   10000 perm   2 sec   (5086 perm/sec)   p_kst 9.818000e-01   p_cons 7.664000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GRM4.7_2779_10000_0.9818_0.7664_1.png
                gene_name: GRM4
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
GSDMC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.622981e-02	ci left: 8.466204e-01	ci right 8.605729e-01	k: 8537	n:10000
Cons ci ratio: 1.979647e-02	ci left: 7.887776e-01	ci right 8.046492e-01	k: 7968	n:10000
KS ci ratio: 2.187136e-02	ci left: 7.541348e-01	ci right 7.709120e-01	k: 7626	n:10000
GSDMC   10000 perm   2 sec   (5408 perm/sec)   p_kst 7.626000e-01   p_cons 7.968000e-01   p_joint 8.537000e-01

Outputting figure to mutsig2_images.part000000000075/GSDMC.7_1579_10000_0.7626_0.7968_0.8537.png
                gene_name: GSDMC
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 41 percent done.
GRIK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.775008e-01	ci left: 4.235985e-02	ci right 5.070688e-02	k: 464	n:10000
Cons ci ratio: 5.979314e-02	ci left: 2.915232e-01	ci right 3.095931e-01	k: 3005	n:10000
KS ci ratio: 3.338274e-01	ci left: 1.133070e-02	ci right 1.595903e-02	k: 135	n:10000
GRIK5   10000 perm   2 sec   (5271 perm/sec)   p_kst 1.350000e-02   p_cons 3.005000e-01   p_joint 4.640000e-02

Joint ci ratio: 1.417063e-01	ci left: 3.423328e-02	ci right 3.950247e-02	k: 736	n:20000
Cons ci ratio: 4.246197e-02	ci left: 2.924112e-01	ci right 3.051473e-01	k: 5975	n:20000
KS ci ratio: 2.187629e-01	ci left: 1.407013e-02	ci right 1.757269e-02	k: 315	n:20000
GRIK5   20000 perm   4 sec   (4734 perm/sec)   p_kst 1.575000e-02   p_cons 2.987500e-01   p_joint 3.680000e-02

Joint ci ratio: 1.446328e-01	ci left: 2.216905e-02	ci right 2.565733e-02	k: 716	n:30000
Cons ci ratio: 3.562270e-02	ci left: 2.824157e-01	ci right 2.926921e-01	k: 8626	n:30000
KS ci ratio: 1.813614e-01	ci left: 1.394148e-02	ci right 1.675352e-02	k: 459	n:30000
GRIK5   30000 perm   7 sec   (4533 perm/sec)   p_kst 1.530000e-02   p_cons 2.875333e-01   p_joint 2.386667e-02

Joint ci ratio: 1.189674e-01	ci left: 2.485083e-02	ci right 2.801843e-02	k: 1056	n:40000
Cons ci ratio: 3.155698e-02	ci left: 2.739616e-01	ci right 2.827706e-01	k: 11134	n:40000
KS ci ratio: 1.538273e-01	ci left: 1.474499e-02	ci right 1.722599e-02	k: 638	n:40000
GRIK5   40000 perm   9 sec   (4402 perm/sec)   p_kst 1.595000e-02   p_cons 2.783500e-01   p_joint 2.640000e-02

Joint ci ratio: 1.040555e-01	ci left: 2.616203e-02	ci right 2.905316e-02	k: 1379	n:50000
Cons ci ratio: 2.829409e-02	ci left: 2.734588e-01	ci right 2.813271e-01	k: 13869	n:50000
KS ci ratio: 1.373911e-01	ci left: 1.491835e-02	ci right 1.713836e-02	k: 800	n:50000
GRIK5   50000 perm   12 sec   (4300 perm/sec)   p_kst 1.600000e-02   p_cons 2.773800e-01   p_joint 2.758000e-02

Joint ci ratio: 9.213890e-02	ci left: 2.793246e-02	ci right 3.064666e-02	k: 1756	n:60000
Cons ci ratio: 2.585681e-02	ci left: 2.733719e-01	ci right 2.805497e-01	k: 16617	n:60000
KS ci ratio: 1.257000e-01	ci left: 1.494653e-02	ci right 1.696735e-02	k: 956	n:60000
GRIK5   60000 perm   14 sec   (4210 perm/sec)   p_kst 1.593333e-02   p_cons 2.769500e-01   p_joint 2.926667e-02

Joint ci ratio: 9.169694e-02	ci left: 2.427495e-02	ci right 2.662176e-02	k: 1780	n:70000
Cons ci ratio: 2.392653e-02	ci left: 2.738435e-01	ci right 2.804892e-01	k: 19401	n:70000
KS ci ratio: 1.164022e-01	ci left: 1.501406e-02	ci right 1.688352e-02	k: 1115	n:70000
GRIK5   70000 perm   17 sec   (4121 perm/sec)   p_kst 1.592857e-02   p_cons 2.771571e-01   p_joint 2.542857e-02

Joint ci ratio: 8.729221e-02	ci left: 2.351315e-02	ci right 2.567152e-02	k: 1966	n:80000
Cons ci ratio: 2.233921e-02	ci left: 2.748101e-01	ci right 2.810310e-01	k: 22233	n:80000
KS ci ratio: 1.100488e-01	ci left: 1.475263e-02	ci right 1.648276e-02	k: 1248	n:80000
GRIK5   80000 perm   20 sec   (4041 perm/sec)   p_kst 1.560000e-02   p_cons 2.779125e-01   p_joint 2.457500e-02

Joint ci ratio: 8.495221e-02	ci left: 2.212841e-02	ci right 2.410249e-02	k: 2079	n:90000
Cons ci ratio: 2.106584e-02	ci left: 2.749085e-01	ci right 2.807724e-01	k: 25005	n:90000
KS ci ratio: 1.041748e-01	ci left: 1.468139e-02	ci right 1.630562e-02	k: 1393	n:90000
GRIK5   90000 perm   23 sec   (3967 perm/sec)   p_kst 1.547778e-02   p_cons 2.778333e-01   p_joint 2.310000e-02

Joint ci ratio: 8.564324e-02	ci left: 1.964045e-02	ci right 2.140751e-02	k: 2051	n:100000
Cons ci ratio: 2.001995e-02	ci left: 2.743574e-01	ci right 2.799155e-01	k: 27713	n:100000
KS ci ratio: 9.876060e-02	ci left: 1.474344e-02	ci right 1.628485e-02	k: 1550	n:100000
GRIK5   100000 perm   26 sec   (3901 perm/sec)   p_kst 1.550000e-02   p_cons 2.771300e-01   p_joint 2.051000e-02

Outputting figure to mutsig2_images.part000000000075/GRIK5.6_3019_100000_0.0155_0.27713_0.02051.png
                gene_name: GRIK5
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 43 percent done.
GRIN3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.895871e-02	ci left: 6.374410e-01	ci right 6.562734e-01	k: 6469	n:10000
Cons ci ratio: 2.669787e-02	ci left: 6.738786e-01	ci right 6.922147e-01	k: 6831	n:10000
KS ci ratio: 4.044451e-02	ci left: 4.744608e-01	ci right 4.941484e-01	k: 4843	n:10000
GRIN3A   10000 perm   2 sec   (5464 perm/sec)   p_kst 4.843000e-01   p_cons 6.831000e-01   p_joint 6.469000e-01

Outputting figure to mutsig2_images.part000000000075/GRIN3A.6_3384_10000_0.4843_0.6831_0.6469.png
                gene_name: GRIN3A
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 45 percent done.
GSDMB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.356558e-02	ci left: 8.868791e-01	ci right 8.990909e-01	k: 8931	n:10000
KS ci ratio: 3.405707e-02	ci left: 5.600270e-01	ci right 5.795323e-01	k: 5698	n:10000
GSDMB   10000 perm   2 sec   (6320 perm/sec)   p_kst 5.698000e-01   p_cons 8.931000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GSDMB.6_1291_10000_0.5698_0.8931_1.png
                gene_name: GSDMB
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
GRIK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.502117e-02	ci left: 7.015006e-01	ci right 7.193767e-01	k: 7105	n:10000
Cons ci ratio: 4.026683e-02	ci left: 4.766589e-01	ci right 4.963490e-01	k: 4865	n:10000
KS ci ratio: 1.106241e-02	ci left: 9.210038e-01	ci right 9.313463e-01	k: 9263	n:10000
GRIK1   10000 perm   2 sec   (5136 perm/sec)   p_kst 9.263000e-01   p_cons 4.865000e-01   p_joint 7.105000e-01

Outputting figure to mutsig2_images.part000000000075/GRIK1.5_2985_10000_0.9263_0.4865_0.7105.png
                gene_name: GRIK1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 48 percent done.
GRIN2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.541967e-01	ci left: 5.600212e-02	ci right 6.545578e-02	k: 606	n:10000
Cons ci ratio: 1.977666e-01	ci left: 3.405205e-02	ci right 4.162024e-02	k: 377	n:10000
KS ci ratio: 9.973603e-02	ci left: 1.270870e-01	ci right 1.405271e-01	k: 1337	n:10000
GRIN2D   10000 perm   2 sec   (5211 perm/sec)   p_kst 1.337000e-01   p_cons 3.770000e-02   p_joint 6.060000e-02

Joint ci ratio: 9.371018e-02	ci left: 7.666776e-02	ci right 8.425474e-02	k: 1608	n:20000
Cons ci ratio: 1.430211e-01	ci left: 3.360565e-02	ci right 3.883031e-02	k: 723	n:20000
KS ci ratio: 7.017748e-02	ci left: 1.301938e-01	ci right 1.397126e-01	k: 2698	n:20000
GRIN2D   20000 perm   4 sec   (4663 perm/sec)   p_kst 1.349000e-01   p_cons 3.615000e-02   p_joint 8.040000e-02

Joint ci ratio: 7.496317e-02	ci left: 8.039339e-02	ci right 8.668754e-02	k: 2505	n:30000
Cons ci ratio: 1.183117e-01	ci left: 3.320786e-02	ci right 3.741609e-02	k: 1058	n:30000
KS ci ratio: 5.829008e-02	ci left: 1.271683e-01	ci right 1.348366e-01	k: 3929	n:30000
GRIN2D   30000 perm   7 sec   (4464 perm/sec)   p_kst 1.309667e-01   p_cons 3.526667e-02   p_joint 8.350000e-02

Joint ci ratio: 9.098164e-02	ci left: 4.232868e-02	ci right 4.638780e-02	k: 1773	n:40000
Cons ci ratio: 1.019015e-01	ci left: 3.385423e-02	ci right 3.751358e-02	k: 1426	n:40000
KS ci ratio: 5.047529e-02	ci left: 1.277079e-01	ci right 1.343458e-01	k: 5240	n:40000
GRIN2D   40000 perm   9 sec   (4255 perm/sec)   p_kst 1.310000e-01   p_cons 3.565000e-02   p_joint 4.432500e-02

Joint ci ratio: 7.256841e-02	ci left: 5.313552e-02	ci right 5.715632e-02	k: 2756	n:50000
Cons ci ratio: 9.058566e-02	ci left: 3.446236e-02	ci right 3.775178e-02	k: 1804	n:50000
KS ci ratio: 4.511981e-02	ci left: 1.281927e-01	ci right 1.341302e-01	k: 6557	n:50000
GRIN2D   50000 perm   12 sec   (4170 perm/sec)   p_kst 1.311400e-01   p_cons 3.608000e-02   p_joint 5.512000e-02

Outputting figure to mutsig2_images.part000000000075/GRIN2D.5_4059_50000_0.13114_0.03608_0.05512.png
                gene_name: GRIN2D
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 50 percent done.
GRK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.938832e-02	ci left: 3.768407e-01	ci right 3.960255e-01	k: 3864	n:10000
Cons ci ratio: 5.247176e-02	ci left: 3.486956e-01	ci right 3.675871e-01	k: 3581	n:10000
KS ci ratio: 5.505688e-02	ci left: 3.270391e-01	ci right 3.456564e-01	k: 3363	n:10000
GRK4   10000 perm   2 sec   (5465 perm/sec)   p_kst 3.363000e-01   p_cons 3.581000e-01   p_joint 3.864000e-01

Outputting figure to mutsig2_images.part000000000075/GRK4.5_1801_10000_0.3363_0.3581_0.3864.png
                gene_name: GRK4
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 52 percent done.
GTF2E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.536014e-02	ci left: 5.414881e-01	ci right 5.610820e-01	k: 5513	n:10000
Cons ci ratio: 8.720168e-02	ci left: 1.607198e-01	ci right 1.754741e-01	k: 1680	n:10000
KS ci ratio: 2.446268e-02	ci left: 7.107838e-01	ci right 7.284881e-01	k: 7197	n:10000
GTF2E1   10000 perm   2 sec   (5986 perm/sec)   p_kst 7.197000e-01   p_cons 1.680000e-01   p_joint 5.513000e-01

Outputting figure to mutsig2_images.part000000000075/GTF2E1.5_1336_10000_0.7197_0.168_0.5513.png
                gene_name: GTF2E1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 54 percent done.
GTF2F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.991605e-02	ci left: 6.223600e-01	ci right 6.413631e-01	k: 6319	n:10000
KS ci ratio: 1.624928e-02	ci left: 8.463146e-01	ci right 8.602789e-01	k: 8534	n:10000
GTF2F1   10000 perm   2 sec   (5232 perm/sec)   p_kst 8.534000e-01   p_cons 6.319000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GTF2F1.5_1606_10000_0.8534_0.6319_1.png
                gene_name: GTF2F1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
GRIN2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.073728e-02	ci left: 3.642059e-01	ci right 3.832677e-01	k: 3737	n:10000
Cons ci ratio: 7.901581e-02	ci left: 1.896376e-01	ci right 2.053390e-01	k: 1974	n:10000
KS ci ratio: 3.391144e-02	ci left: 5.621323e-01	ci right 5.816258e-01	k: 5719	n:10000
GRIN2C   10000 perm   2 sec   (5368 perm/sec)   p_kst 5.719000e-01   p_cons 1.974000e-01   p_joint 3.737000e-01

Outputting figure to mutsig2_images.part000000000075/GRIN2C.4_3750_10000_0.5719_0.1974_0.3737.png
                gene_name: GRIN2C
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 57 percent done.
GRIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.562101e-02	ci left: 8.561050e-01	ci right 8.696829e-01	k: 8630	n:10000
Cons ci ratio: 2.824610e-02	ci left: 6.488086e-01	ci right 6.674992e-01	k: 6582	n:10000
KS ci ratio: 3.119598e-02	ci left: 6.025685e-01	ci right 6.217661e-01	k: 6122	n:10000
GRIP2   10000 perm   2 sec   (5236 perm/sec)   p_kst 6.122000e-01   p_cons 6.582000e-01   p_joint 8.630000e-01

Outputting figure to mutsig2_images.part000000000075/GRIP2.4_3526_10000_0.6122_0.6582_0.863.png
                gene_name: GRIP2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 59 percent done.
GRK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.013191e-03	ci left: 9.813449e-01	ci right 9.863675e-01	k: 9840	n:10000
KS ci ratio: 2.055178e-02	ci left: 7.762076e-01	ci right 7.924264e-01	k: 7844	n:10000
GRK5   10000 perm   2 sec   (6496 perm/sec)   p_kst 7.844000e-01   p_cons 9.840000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GRK5.4_1837_10000_0.7844_0.984_1.png
                gene_name: GRK5
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
GRM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.721333e-01	ci left: 4.504270e-02	ci right 5.362227e-02	k: 492	n:10000
Cons ci ratio: 1.799927e-02	ci left: 8.183233e-01	ci right 8.332864e-01	k: 8259	n:10000
KS ci ratio: 2.816585e-01	ci left: 1.632191e-02	ci right 2.176339e-02	k: 189	n:10000
GRM2   10000 perm   2 sec   (5497 perm/sec)   p_kst 1.890000e-02   p_cons 8.259000e-01   p_joint 4.920000e-02

Joint ci ratio: 1.053430e-01	ci left: 6.132920e-02	ci right 6.819800e-02	k: 1294	n:20000
Cons ci ratio: 1.202819e-02	ci left: 8.364146e-01	ci right 8.465859e-01	k: 16831	n:20000
KS ci ratio: 1.997038e-01	ci left: 1.701043e-02	ci right 2.083125e-02	k: 377	n:20000
GRM2   20000 perm   4 sec   (4935 perm/sec)   p_kst 1.885000e-02   p_cons 8.415500e-01   p_joint 6.470000e-02

Joint ci ratio: 7.307038e-02	ci left: 8.432591e-02	ci right 9.075423e-02	k: 2625	n:30000
Cons ci ratio: 1.002074e-02	ci left: 8.318619e-01	ci right 8.402729e-01	k: 25083	n:30000
KS ci ratio: 1.637964e-01	ci left: 1.719719e-02	ci right 2.029700e-02	k: 561	n:30000
GRM2   30000 perm   6 sec   (4723 perm/sec)   p_kst 1.870000e-02   p_cons 8.361000e-01   p_joint 8.750000e-02

Joint ci ratio: 7.771608e-02	ci left: 5.747128e-02	ci right 6.214288e-02	k: 2391	n:40000
Cons ci ratio: 8.688430e-03	ci left: 8.321075e-01	ci right 8.393937e-01	k: 33431	n:40000
KS ci ratio: 1.431559e-01	ci left: 1.708140e-02	ci right 1.973917e-02	k: 735	n:40000
GRM2   40000 perm   9 sec   (4587 perm/sec)   p_kst 1.837500e-02   p_cons 8.357750e-01   p_joint 5.977500e-02

Joint ci ratio: 8.200748e-02	ci left: 4.190508e-02	ci right 4.550814e-02	k: 2184	n:50000
Cons ci ratio: 7.962686e-03	ci left: 8.256506e-01	ci right 8.322712e-01	k: 41449	n:50000
KS ci ratio: 1.289743e-01	ci left: 1.696889e-02	ci right 1.932753e-02	k: 906	n:50000
GRM2   50000 perm   11 sec   (4479 perm/sec)   p_kst 1.812000e-02   p_cons 8.289800e-01   p_joint 4.368000e-02

Joint ci ratio: 6.547835e-02	ci left: 5.451804e-02	ci right 5.822502e-02	k: 3381	n:60000
Cons ci ratio: 7.303379e-03	ci left: 8.245870e-01	ci right 8.306479e-01	k: 49658	n:60000
KS ci ratio: 1.186507e-01	ci left: 1.680559e-02	ci right 1.894141e-02	k: 1071	n:60000
GRM2   60000 perm   14 sec   (4383 perm/sec)   p_kst 1.785000e-02   p_cons 8.276333e-01   p_joint 5.635000e-02

Joint ci ratio: 6.456252e-02	ci left: 4.841107e-02	ci right 5.165493e-02	k: 3501	n:70000
Cons ci ratio: 6.738683e-03	ci left: 8.257875e-01	ci right 8.313852e-01	k: 58002	n:70000
KS ci ratio: 1.103294e-01	ci left: 1.673608e-02	ci right 1.870419e-02	k: 1239	n:70000
GRM2   70000 perm   16 sec   (4296 perm/sec)   p_kst 1.770000e-02   p_cons 8.286000e-01   p_joint 5.001429e-02

Joint ci ratio: 6.763225e-02	ci left: 3.893537e-02	ci right 4.167309e-02	k: 3223	n:80000
Cons ci ratio: 6.317870e-03	ci left: 8.253165e-01	ci right 8.305597e-01	k: 66236	n:80000
KS ci ratio: 1.032833e-01	ci left: 1.677319e-02	ci right 1.861203e-02	k: 1414	n:80000
GRM2   80000 perm   19 sec   (4219 perm/sec)   p_kst 1.767500e-02   p_cons 8.279500e-01   p_joint 4.028750e-02

Joint ci ratio: 6.530885e-02	ci left: 3.723047e-02	ci right 3.975494e-02	k: 3463	n:90000
Cons ci ratio: 5.961765e-03	ci left: 8.252167e-01	ci right 8.301622e-01	k: 74493	n:90000
KS ci ratio: 9.687817e-02	ci left: 1.700040e-02	ci right 1.874199e-02	k: 1607	n:90000
GRM2   90000 perm   22 sec   (4145 perm/sec)   p_kst 1.785556e-02   p_cons 8.277000e-01   p_joint 3.847778e-02

Outputting figure to mutsig2_images.part000000000075/GRM2.4_2639_90000_0.017856_0.8277_0.038478.png
                gene_name: GRM2
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.040 

Current progress: 62 percent done.
GSS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.991301e-02	ci left: 3.718655e-01	ci right 3.910036e-01	k: 3814	n:10000
Cons ci ratio: 3.629176e-02	ci left: 5.285691e-01	ci right 5.482085e-01	k: 5384	n:10000
KS ci ratio: 7.287598e-02	ci left: 2.161558e-01	ci right 2.326051e-01	k: 2243	n:10000
GSS   10000 perm   2 sec   (5941 perm/sec)   p_kst 2.243000e-01   p_cons 5.384000e-01   p_joint 3.814000e-01

Outputting figure to mutsig2_images.part000000000075/GSS.4_1473_10000_0.2243_0.5384_0.3814.png
                gene_name: GSS
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 64 percent done.
GSTA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.516963e-03	ci left: 9.507523e-01	ci right 9.589800e-01	k: 9550	n:10000
KS ci ratio: 1.761010e-02	ci left: 8.246276e-01	ci right 8.393784e-01	k: 8321	n:10000
GSTA3   10000 perm   2 sec   (6330 perm/sec)   p_kst 8.321000e-01   p_cons 9.550000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GSTA3.4_693_10000_0.8321_0.955_1.png
                gene_name: GSTA3
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
GSTCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.597900e-02	ci left: 5.328747e-01	ci right 5.525004e-01	k: 5427	n:10000
Cons ci ratio: 6.225664e-02	ci left: 2.749777e-01	ci right 2.927484e-01	k: 2838	n:10000
KS ci ratio: 2.296359e-02	ci left: 7.358313e-01	ci right 7.530260e-01	k: 7445	n:10000
GSTCD   10000 perm   2 sec   (5732 perm/sec)   p_kst 7.445000e-01   p_cons 2.838000e-01   p_joint 5.427000e-01

Outputting figure to mutsig2_images.part000000000075/GSTCD.4_1946_10000_0.7445_0.2838_0.5427.png
                gene_name: GSTCD
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 68 percent done.
GTDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.479914e-02	ci left: 5.494030e-01	ci right 5.689625e-01	k: 5592	n:10000
Cons ci ratio: 1.632709e-02	ci left: 8.450916e-01	ci right 8.591026e-01	k: 8522	n:10000
KS ci ratio: 5.323349e-02	ci left: 3.421367e-01	ci right 3.609498e-01	k: 3515	n:10000
GTDC1   10000 perm   2 sec   (5869 perm/sec)   p_kst 3.515000e-01   p_cons 8.522000e-01   p_joint 5.592000e-01

Outputting figure to mutsig2_images.part000000000075/GTDC1.4_1413_10000_0.3515_0.8522_0.5592.png
                gene_name: GTDC1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 70 percent done.
GRK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.374371e-02	ci left: 2.655721e-01	ci right 2.831595e-01	k: 2743	n:10000
Cons ci ratio: 4.358455e-02	ci left: 4.373218e-01	ci right 4.569090e-01	k: 4471	n:10000
KS ci ratio: 1.170113e-01	ci left: 9.496613e-02	ci right 1.068675e-01	k: 1008	n:10000
GRK6   10000 perm   2 sec   (5217 perm/sec)   p_kst 1.008000e-01   p_cons 4.471000e-01   p_joint 2.743000e-01

Joint ci ratio: 4.724112e-02	ci left: 2.500120e-01	ci right 2.621590e-01	k: 5121	n:20000
Cons ci ratio: 3.103126e-02	ci left: 4.368481e-01	ci right 4.506683e-01	k: 8875	n:20000
KS ci ratio: 8.151112e-02	ci left: 9.940942e-02	ci right 1.079062e-01	k: 2072	n:20000
GRK6   20000 perm   4 sec   (4712 perm/sec)   p_kst 1.036000e-01   p_cons 4.437500e-01   p_joint 2.560500e-01

Outputting figure to mutsig2_images.part000000000075/GRK6.3_1844_20000_0.1036_0.44375_0.25605.png
                gene_name: GRK6
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 71 percent done.
GRPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.029907e-02	ci left: 4.762592e-01	ci right 4.959489e-01	k: 4861	n:10000
Cons ci ratio: 1.681647e-02	ci left: 8.373491e-01	ci right 8.516496e-01	k: 8446	n:10000
KS ci ratio: 4.897433e-02	ci left: 3.808216e-01	ci right 4.000423e-01	k: 3904	n:10000
GRPR   10000 perm   2 sec   (6500 perm/sec)   p_kst 3.904000e-01   p_cons 8.446000e-01   p_joint 4.861000e-01

Outputting figure to mutsig2_images.part000000000075/GRPR.3_1167_10000_0.3904_0.8446_0.4861.png
                gene_name: GRPR
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 73 percent done.
GSG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.521745e-02	ci left: 5.434917e-01	ci right 5.630773e-01	k: 5533	n:10000
Cons ci ratio: 3.242749e-03	ci left: 9.914989e-01	ci right 9.948039e-01	k: 9933	n:10000
KS ci ratio: 4.971267e-02	ci left: 3.737560e-01	ci right 3.929120e-01	k: 3833	n:10000
GSG1   10000 perm   2 sec   (6457 perm/sec)   p_kst 3.833000e-01   p_cons 9.933000e-01   p_joint 5.533000e-01

Outputting figure to mutsig2_images.part000000000075/GSG1.3_1254_10000_0.3833_0.9933_0.5533.png
                gene_name: GSG1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 75 percent done.
GSTM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.429240e-02	ci left: 2.622072e-01	ci right 2.797264e-01	k: 2709	n:10000
Cons ci ratio: 6.003574e-02	ci left: 2.898383e-01	ci right 3.078790e-01	k: 2988	n:10000
KS ci ratio: 6.703721e-02	ci left: 2.461830e-01	ci right 2.633601e-01	k: 2547	n:10000
GSTM3   10000 perm   2 sec   (6454 perm/sec)   p_kst 2.547000e-01   p_cons 2.988000e-01   p_joint 2.709000e-01

Outputting figure to mutsig2_images.part000000000075/GSTM3.3_710_10000_0.2547_0.2988_0.2709.png
                gene_name: GSTM3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 77 percent done.
GRK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.839688e-02	ci left: 6.463937e-01	ci right 6.651154e-01	k: 6558	n:10000
KS ci ratio: 9.035409e-02	ci left: 1.511960e-01	ci right 1.656036e-01	k: 1583	n:10000
GRK1   10000 perm   1 sec   (7044 perm/sec)   p_kst 1.583000e-01   p_cons 6.558000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GRK1.2_998_10000_0.1583_0.6558_1.png
                gene_name: GRK1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
GRK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.439163e-02	ci left: 5.552156e-01	ci right 5.747465e-01	k: 5650	n:10000
KS ci ratio: 3.710244e-02	ci left: 5.175581e-01	ci right 5.372259e-01	k: 5274	n:10000
GRK7   10000 perm   2 sec   (6369 perm/sec)   p_kst 5.274000e-01   p_cons 5.650000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GRK7.2_1678_10000_0.5274_0.565_1.png
                gene_name: GRK7
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
GRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.624279e-02	ci left: 8.464166e-01	ci right 8.603769e-01	k: 8535	n:10000
Cons ci ratio: 2.008330e-02	ci left: 7.840118e-01	ci right 8.000177e-01	k: 7921	n:10000
KS ci ratio: 4.555035e-02	ci left: 4.156828e-01	ci right 4.351607e-01	k: 4254	n:10000
GRN   10000 perm   2 sec   (6194 perm/sec)   p_kst 4.254000e-01   p_cons 7.921000e-01   p_joint 8.535000e-01

Outputting figure to mutsig2_images.part000000000075/GRN.2_1830_10000_0.4254_0.7921_0.8535.png
                gene_name: GRN
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 82 percent done.
GRXCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.794182e-01	ci left: 1.660112e-02	ci right 2.208394e-02	k: 192	n:10000
Cons ci ratio: 1.262686e-01	ci left: 8.232386e-02	ci right 9.351756e-02	k: 878	n:10000
KS ci ratio: 1.361933e-01	ci left: 7.126753e-02	ci right 8.178074e-02	k: 764	n:10000
GRXCR1   10000 perm   1 sec   (6759 perm/sec)   p_kst 7.640000e-02   p_cons 8.780000e-02   p_joint 1.920000e-02

Joint ci ratio: 1.384243e-01	ci left: 3.587580e-02	ci right 4.125942e-02	k: 770	n:20000
Cons ci ratio: 9.033333e-02	ci left: 8.214981e-02	ci right 8.997103e-02	k: 1720	n:20000
KS ci ratio: 9.720240e-02	ci left: 7.153325e-02	ci right 7.889082e-02	k: 1503	n:20000
GRXCR1   20000 perm   3 sec   (6001 perm/sec)   p_kst 7.515000e-02   p_cons 8.600000e-02   p_joint 3.850000e-02

Joint ci ratio: 1.969436e-01	ci left: 1.174887e-02	ci right 1.434670e-02	k: 390	n:30000
Cons ci ratio: 7.368711e-02	ci left: 8.301484e-02	ci right 8.939890e-02	k: 2585	n:30000
KS ci ratio: 7.896925e-02	ci left: 7.289491e-02	ci right 7.892086e-02	k: 2276	n:30000
GRXCR1   30000 perm   5 sec   (5675 perm/sec)   p_kst 7.586667e-02   p_cons 8.616667e-02   p_joint 1.300000e-02

Joint ci ratio: 3.954895e-01	ci left: 1.966938e-03	ci right 2.957505e-03	k: 97	n:40000
Cons ci ratio: 6.396751e-02	ci left: 8.307302e-02	ci right 8.858728e-02	k: 3432	n:40000
KS ci ratio: 6.884462e-02	ci left: 7.238802e-02	ci right 7.757388e-02	k: 2998	n:40000
GRXCR1   40000 perm   7 sec   (5486 perm/sec)   p_kst 7.495000e-02   p_cons 8.580000e-02   p_joint 2.425000e-03

Joint ci ratio: 1.225268e-01	ci left: 1.882959e-02	ci right 2.130657e-02	k: 1002	n:50000
Cons ci ratio: 5.689770e-02	ci left: 8.422781e-02	ci right 8.918029e-02	k: 4334	n:50000
KS ci ratio: 6.154779e-02	ci left: 7.272575e-02	ci right 7.736373e-02	k: 3751	n:50000
GRXCR1   50000 perm   9 sec   (5337 perm/sec)   p_kst 7.502000e-02   p_cons 8.668000e-02   p_joint 2.004000e-02

Joint ci ratio: 9.097204e-02	ci left: 2.864948e-02	ci right 3.139623e-02	k: 1800	n:60000
Cons ci ratio: 5.196768e-02	ci left: 8.436129e-02	ci right 8.887879e-02	k: 5196	n:60000
KS ci ratio: 5.639135e-02	ci left: 7.242767e-02	ci right 7.664693e-02	k: 4471	n:60000
GRXCR1   60000 perm   12 sec   (5204 perm/sec)   p_kst 7.451667e-02   p_cons 8.660000e-02   p_joint 3.000000e-02

Outputting figure to mutsig2_images.part000000000075/GRXCR1.2_889_60000_0.074517_0.0866_0.03.png
                gene_name: GRXCR1
               theta_stop: 0.091 
                    nperm: 60000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 84 percent done.
GRXCR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.460163e-02	ci left: 8.716295e-01	ci right 8.845493e-01	k: 8782	n:10000
Cons ci ratio: 4.787107e-02	ci left: 3.916729e-01	ci right 4.109846e-01	k: 4013	n:10000
KS ci ratio: 1.761150e-01	ci left: 4.303019e-02	ci right 5.143610e-02	k: 471	n:10000
GRXCR2   10000 perm   1 sec   (6893 perm/sec)   p_kst 4.710000e-02   p_cons 4.013000e-01   p_joint 8.782000e-01

Joint ci ratio: 2.793632e-02	ci left: 4.890967e-01	ci right 5.030045e-01	k: 9921	n:20000
Cons ci ratio: 3.422945e-02	ci left: 3.892126e-01	ci right 4.028177e-01	k: 7920	n:20000
KS ci ratio: 1.277643e-01	ci left: 4.207135e-02	ci right 4.786188e-02	k: 898	n:20000
GRXCR2   20000 perm   3 sec   (6064 perm/sec)   p_kst 4.490000e-02   p_cons 3.960000e-01   p_joint 4.960500e-01

Joint ci ratio: 8.418604e-03	ci left: 8.747159e-01	ci right 8.821440e-01	k: 26354	n:30000
Cons ci ratio: 2.799397e-02	ci left: 3.896947e-01	ci right 4.007923e-01	k: 11857	n:30000
KS ci ratio: 1.036974e-01	ci left: 4.310423e-02	ci right 4.785097e-02	k: 1363	n:30000
GRXCR2   30000 perm   5 sec   (5744 perm/sec)   p_kst 4.543333e-02   p_cons 3.952333e-01   p_joint 8.784667e-01

Joint ci ratio: 7.342283e-03	ci left: 8.736909e-01	ci right 8.801542e-01	k: 35078	n:40000
Cons ci ratio: 2.445864e-02	ci left: 3.862384e-01	ci right 3.958274e-01	k: 15641	n:40000
KS ci ratio: 8.938523e-02	ci left: 4.382080e-02	ci right 4.794545e-02	k: 1834	n:40000
GRXCR2   40000 perm   7 sec   (5548 perm/sec)   p_kst 4.585000e-02   p_cons 3.910250e-01   p_joint 8.769500e-01

Outputting figure to mutsig2_images.part000000000075/GRXCR2.2_759_40000_0.04585_0.39103_0.87695.png
                gene_name: GRXCR2
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 86 percent done.
GSG1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.109147e-02	ci left: 7.671924e-01	ci right 7.836469e-01	k: 7755	n:10000
Cons ci ratio: 4.396556e-02	ci left: 4.330324e-01	ci right 4.526010e-01	k: 4428	n:10000
KS ci ratio: 2.360957e-02	ci left: 7.250203e-01	ci right 7.424434e-01	k: 7338	n:10000
GSG1L   10000 perm   1 sec   (6933 perm/sec)   p_kst 7.338000e-01   p_cons 4.428000e-01   p_joint 7.755000e-01

Outputting figure to mutsig2_images.part000000000075/GSG1L.2_1024_10000_0.7338_0.4428_0.7755.png
                gene_name: GSG1L
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 88 percent done.
GSG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.687682e-02	ci left: 6.709573e-01	ci right 6.893377e-01	k: 6802	n:10000
Cons ci ratio: 2.238439e-02	ci left: 7.455367e-01	ci right 7.625150e-01	k: 7541	n:10000
KS ci ratio: 5.600744e-02	ci left: 3.194942e-01	ci right 3.380056e-01	k: 3287	n:10000
GSG2   10000 perm   2 sec   (5970 perm/sec)   p_kst 3.287000e-01   p_cons 7.541000e-01   p_joint 6.802000e-01

Outputting figure to mutsig2_images.part000000000075/GSG2.2_2401_10000_0.3287_0.7541_0.6802.png
                gene_name: GSG2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 89 percent done.
GSK3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.747592e-01	ci left: 4.370078e-02	ci right 5.216506e-02	k: 478	n:10000
Cons ci ratio: 2.478600e-01	ci left: 2.137124e-02	ci right 2.751008e-02	k: 243	n:10000
KS ci ratio: 3.318984e-02	ci left: 5.726613e-01	ci right 5.920907e-01	k: 5824	n:10000
GSK3A   10000 perm   2 sec   (6399 perm/sec)   p_kst 5.824000e-01   p_cons 2.430000e-02   p_joint 4.780000e-02

Joint ci ratio: 1.344817e-01	ci left: 3.800349e-02	ci right 4.353104e-02	k: 814	n:20000
Cons ci ratio: 1.667107e-01	ci left: 2.465375e-02	ci right 2.918520e-02	k: 537	n:20000
KS ci ratio: 2.337617e-02	ci left: 5.774829e-01	ci right 5.911925e-01	k: 11687	n:20000
GSK3A   20000 perm   4 sec   (5667 perm/sec)   p_kst 5.843500e-01   p_cons 2.685000e-02   p_joint 4.070000e-02

Joint ci ratio: 1.075985e-01	ci left: 4.008265e-02	ci right 4.467317e-02	k: 1270	n:30000
Cons ci ratio: 1.338363e-01	ci left: 2.593660e-02	ci right 2.968892e-02	k: 833	n:30000
KS ci ratio: 1.918072e-02	ci left: 5.763609e-01	ci right 5.875566e-01	k: 17459	n:30000
GSK3A   30000 perm   6 sec   (5399 perm/sec)   p_kst 5.819667e-01   p_cons 2.776667e-02   p_joint 4.233333e-02

Joint ci ratio: 9.199002e-02	ci left: 4.142394e-02	ci right 4.544268e-02	k: 1736	n:40000
Cons ci ratio: 1.147959e-01	ci left: 2.669672e-02	ci right 2.997223e-02	k: 1132	n:40000
KS ci ratio: 1.651207e-02	ci left: 5.800277e-01	ci right 5.897100e-01	k: 23395	n:40000
GSK3A   40000 perm   8 sec   (5217 perm/sec)   p_kst 5.848750e-01   p_cons 2.830000e-02   p_joint 4.340000e-02

Joint ci ratio: 7.426564e-02	ci left: 5.081651e-02	ci right 5.475562e-02	k: 2638	n:50000
Cons ci ratio: 1.022412e-01	ci left: 2.709793e-02	ci right 3.003715e-02	k: 1427	n:50000
KS ci ratio: 1.470682e-02	ci left: 5.825892e-01	ci right 5.912407e-01	k: 29346	n:50000
GSK3A   50000 perm   10 sec   (5058 perm/sec)   p_kst 5.869200e-01   p_cons 2.854000e-02   p_joint 5.276000e-02

Joint ci ratio: 6.773636e-02	ci left: 5.107312e-02	ci right 5.467029e-02	k: 3171	n:60000
Cons ci ratio: 9.279383e-02	ci left: 2.754145e-02	ci right 3.023771e-02	k: 1732	n:60000
KS ci ratio: 1.341681e-02	ci left: 5.832815e-01	ci right 5.911768e-01	k: 35234	n:60000
GSK3A   60000 perm   12 sec   (4937 perm/sec)   p_kst 5.872333e-01   p_cons 2.886667e-02   p_joint 5.285000e-02

Outputting figure to mutsig2_images.part000000000075/GSK3A.2_1496_60000_0.58723_0.028867_0.05285.png
                gene_name: GSK3A
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.055 

Current progress: 91 percent done.
GSTA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.143829e-02	ci left: 9.161579e-01	ci right 9.267950e-01	k: 9216	n:10000
Cons ci ratio: 1.243716e-02	ci left: 9.027822e-01	ci right 9.141786e-01	k: 9086	n:10000
KS ci ratio: 5.492152e-02	ci left: 3.281313e-01	ci right 3.467635e-01	k: 3374	n:10000
GSTA5   10000 perm   1 sec   (7254 perm/sec)   p_kst 3.374000e-01   p_cons 9.086000e-01   p_joint 9.216000e-01

Outputting figure to mutsig2_images.part000000000075/GSTA5.2_693_10000_0.3374_0.9086_0.9216.png
                gene_name: GSTA5
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 93 percent done.
GSTM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.937479e-02	ci left: 4.878522e-01	ci right 5.075492e-01	k: 4977	n:10000
Cons ci ratio: 2.202833e-02	ci left: 7.515043e-01	ci right 7.683440e-01	k: 7600	n:10000
KS ci ratio: 9.298371e-02	ci left: 1.438386e-01	ci right 1.579654e-01	k: 1508	n:10000
GSTM2   10000 perm   1 sec   (7305 perm/sec)   p_kst 1.508000e-01   p_cons 7.600000e-01   p_joint 4.977000e-01

Outputting figure to mutsig2_images.part000000000075/GSTM2.2_702_10000_0.1508_0.76_0.4977.png
                gene_name: GSTM2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 95 percent done.
GSTM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.311400e-02	ci left: 8.933376e-01	ci right 9.052286e-01	k: 8994	n:10000
KS ci ratio: 8.315853e-02	ci left: 1.741859e-01	ci right 1.893999e-01	k: 1817	n:10000
GSTM4   10000 perm   1 sec   (7192 perm/sec)   p_kst 1.817000e-01   p_cons 8.994000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000075/GSTM4.2_714_10000_0.1817_0.8994_1.png
                gene_name: GSTM4
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
GSTZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.311543e-01	ci left: 7.659787e-02	ci right 8.744709e-02	k: 819	n:10000
Cons ci ratio: 1.833676e-01	ci left: 3.968114e-02	ci right 4.778736e-02	k: 436	n:10000
KS ci ratio: 1.121871e-01	ci left: 1.026640e-01	ci right 1.149650e-01	k: 1087	n:10000
GSTZ1   10000 perm   1 sec   (6939 perm/sec)   p_kst 1.087000e-01   p_cons 4.360000e-02   p_joint 8.190000e-02

Joint ci ratio: 9.091253e-02	ci left: 8.117049e-02	ci right 8.895064e-02	k: 1700	n:20000
Cons ci ratio: 1.295086e-01	ci left: 4.095680e-02	ci right 4.667678e-02	k: 875	n:20000
KS ci ratio: 7.900420e-02	ci left: 1.052534e-01	ci right 1.139605e-01	k: 2191	n:20000
GSTZ1   20000 perm   3 sec   (6093 perm/sec)   p_kst 1.095500e-01   p_cons 4.375000e-02   p_joint 8.500000e-02

Joint ci ratio: 7.967188e-02	ci left: 7.168417e-02	ci right 7.766518e-02	k: 2239	n:30000
Cons ci ratio: 1.054507e-01	ci left: 4.170676e-02	ci right 4.638206e-02	k: 1320	n:30000
KS ci ratio: 6.351345e-02	ci left: 1.090769e-01	ci right 1.162650e-01	k: 3379	n:30000
GSTZ1   30000 perm   5 sec   (5774 perm/sec)   p_kst 1.126333e-01   p_cons 4.400000e-02   p_joint 7.463333e-02

Joint ci ratio: 6.883222e-02	ci left: 7.241263e-02	ci right 7.759927e-02	k: 2999	n:40000
Cons ci ratio: 9.141385e-02	ci left: 4.193741e-02	ci right 4.597913e-02	k: 1757	n:40000
KS ci ratio: 5.488555e-02	ci left: 1.099872e-01	ci right 1.162191e-01	k: 4523	n:40000
GSTZ1   40000 perm   7 sec   (5570 perm/sec)   p_kst 1.130750e-01   p_cons 4.392500e-02   p_joint 7.497500e-02

Outputting figure to mutsig2_images.part000000000075/GSTZ1.2_687_40000_0.11307_0.043925_0.074975.png
                gene_name: GSTZ1
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.078 

Current progress: 98 percent done.
GTF2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.465934e-03	ci left: 9.702664e-01	ci right 9.766537e-01	k: 9736	n:10000
Cons ci ratio: 4.375241e-02	ci left: 4.354264e-01	ci right 4.550056e-01	k: 4452	n:10000
KS ci ratio: 5.125049e-02	ci left: 3.595318e-01	ci right 3.785446e-01	k: 3690	n:10000
GTF2A1   10000 perm   2 sec   (6582 perm/sec)   p_kst 3.690000e-01   p_cons 4.452000e-01   p_joint 9.736000e-01

Outputting figure to mutsig2_images.part000000000075/GTF2A1.2_1167_10000_0.369_0.4452_0.9736.png
                gene_name: GTF2A1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000075
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 75 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1418>
Subject: Job 9893960: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1418>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000076> was used as the working directory.
Started at Sat Oct  6 00:10:37 2012
Results reported at Sat Oct  6 00:23:09 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000076.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000076.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 76  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000076.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    834.66 sec.
    Max Memory :      3561 MB
    Max Swap   :      5909 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
76
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 76
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 76: processing genes 6762 - 6851
Calculating significance of each gene.
Using projection method.
6762	GTF2F2	6.111493e-01
6763	GTF2H1	1.157610e-01
6764	GTF2H2	1
6765	GTF2H2C	1
6766	GTF2H2D	1
6767	GTF2H3	6.342312e-02
6768	GTF2H4	7.899309e-01
6769	GTF2H5	1
6770	GTF2I	1
6771	GTF2IRD1	1.116944e-01
6772	GTF2IRD2	1
6773	GTF2IRD2B	1
6774	GTF3A	5.026408e-01
6775	GTF3C1	4.564866e-01
6776	GTF3C2	5.428033e-01
6777	GTF3C3	4.503083e-01
6778	GTF3C4	9.799143e-01
6779	GTF3C5	1.470693e-01
6780	GTF3C6	4.611613e-01
6781	GTPBP1	5.908673e-01
6782	GTPBP10	1.094920e-01
In gene GTPBP2 the following bins exceed PROBCAP:
    COAD-AA-3854	categ 6	N = 1766    n = 1	mu =   2.96e-07
6783	GTPBP2	7.004839e-01
6784	GTPBP3	6.017180e-01
6785	GTPBP4	7.593857e-01
6786	GTPBP5	1
6787	GTPBP8	6.769345e-01
6788	GTSE1	9.935130e-01
6789	GTSF1	1
6790	GTSF1L	3.158265e-01
6791	GUCA1A	3.906807e-01
6792	GUCA1B	1.460062e-01
6793	GUCA1C	2.988173e-01
6794	GUCA2A	1
6795	GUCA2B	8.632395e-02
6796	GUCY1A2	1.554926e-02
6797	GUCY1A3	5.748644e-05
6798	GUCY1B3	4.596255e-02
6799	GUCY2C	9.304691e-02
6800	GUCY2D	3.917144e-01
6801	GUCY2F	2.939514e-02
6802	GUF1	5.254653e-01
6803	GUK1	1
6804	GULP1	4.016250e-01
6805	GUSB	8.553971e-01
6806	GXYLT1	3.726358e-01
6807	GXYLT2	3.482195e-01
6808	GYG1	1
6809	GYG2	5.399336e-01
6810	GYLTL1B	8.005330e-01
6811	GYPA	4.601440e-01
6812	GYPB	8.951308e-02
6813	GYPC	2.659141e-01
6814	GYPE	2.318582e-01
6815	GYS1	9.034176e-01
6816	GYS2	1.189053e-02
6817	GZF1	7.406696e-01
6818	GZMA	2.210440e-01
6819	GZMB	2.737966e-01
6820	GZMH	5.384152e-01
6821	GZMK	1.459252e-02
6822	GZMM	5.726984e-01
6823	H1F0	1
6824	H1FNT	9.021225e-01
6825	H1FOO	1
6826	H1FX	1
6827	H2AFJ	1
6828	H2AFV	5.570383e-01
6829	H2AFX	1
6830	H2AFY	3.401054e-01
6831	H2AFY2	3.286969e-01
6832	H2AFZ	4.576881e-01
6833	H2BFWT	3.955149e-01
6834	H3F3A	1
6835	H3F3B	3.079706e-01
6836	H3F3C	2.765066e-01
6837	H6PD	5.881599e-01
6838	HAAO	2.693006e-01
6839	HABP2	4.590488e-01
6840	HABP4	8.586446e-01
6841	HACE1	1.475040e-01
6842	HACL1	1.987230e-01
6843	HADH	7.024725e-01
6844	HADHA	6.689247e-01
6845	HADHB	5.443978e-01
6846	HAGH	1
6847	HAGHL	1
6848	HAL	6.617484e-01
6849	HAMP	3.394034e-01
6850	HAND1	4.378223e-01
6851	HAND2	1.084769e-01
Done

Running MutSig 2:
Scatter job 76: processing genes 6762 - 6851
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
GUCY1A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.064666e-02	ci left: 2.270141e-01	ci right 2.437403e-01	k: 2353	n:10000
Cons ci ratio: 5.419274e-02	ci left: 3.340900e-01	ci right 3.528013e-01	k: 3434	n:10000
KS ci ratio: 9.251487e-02	ci left: 1.451135e-01	ci right 1.592898e-01	k: 1521	n:10000
GUCY1A3   10000 perm   3 sec   (3673 perm/sec)   p_kst 1.521000e-01   p_cons 3.434000e-01   p_joint 2.353000e-01

Outputting figure to mutsig2_images.part000000000076/GUCY1A3.17_2124_10000_0.1521_0.3434_0.2353.png
                gene_name: GUCY1A3
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 2 percent done.
GUCY1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.664240e-02	ci left: 6.747853e-01	ci right 6.931075e-01	k: 6840	n:10000
Cons ci ratio: 5.260898e-02	ci left: 3.475029e-01	ci right 3.663805e-01	k: 3569	n:10000
KS ci ratio: 2.629793e-02	ci left: 6.804278e-01	ci right 6.986616e-01	k: 6896	n:10000
GUCY1A2   10000 perm   3 sec   (3831 perm/sec)   p_kst 6.896000e-01   p_cons 3.569000e-01   p_joint 6.840000e-01

Outputting figure to mutsig2_images.part000000000076/GUCY1A2.12_2231_10000_0.6896_0.3569_0.684.png
                gene_name: GUCY1A2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 4 percent done.
GUCY2F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.906652e-02	ci left: 6.357313e-01	ci right 6.545841e-01	k: 6452	n:10000
Cons ci ratio: 2.354312e-02	ci left: 7.261314e-01	ci right 7.435316e-01	k: 7349	n:10000
KS ci ratio: 4.211635e-02	ci left: 4.542871e-01	ci right 4.739338e-01	k: 4641	n:10000
GUCY2F   10000 perm   2 sec   (4205 perm/sec)   p_kst 4.641000e-01   p_cons 7.349000e-01   p_joint 6.452000e-01

Outputting figure to mutsig2_images.part000000000076/GUCY2F.11_3399_10000_0.4641_0.7349_0.6452.png
                gene_name: GUCY2F
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 6 percent done.
GYS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.043901e-02	ci left: 6.142204e-01	ci right 6.333075e-01	k: 6238	n:10000
Cons ci ratio: 2.161767e-02	ci left: 7.583849e-01	ci right 7.750594e-01	k: 7668	n:10000
KS ci ratio: 4.224355e-02	ci left: 4.527897e-01	ci right 4.724321e-01	k: 4626	n:10000
GYS2   10000 perm   2 sec   (4328 perm/sec)   p_kst 4.626000e-01   p_cons 7.668000e-01   p_joint 6.238000e-01

Outputting figure to mutsig2_images.part000000000076/GYS2.11_2176_10000_0.4626_0.7668_0.6238.png
                gene_name: GYS2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 8 percent done.
GTF3C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.063385e-02	ci left: 6.112064e-01	ci right 6.303232e-01	k: 6208	n:10000
Cons ci ratio: 1.499456e-02	ci left: 8.657021e-01	ci right 8.788802e-01	k: 8724	n:10000
KS ci ratio: 4.642761e-02	ci left: 4.064147e-01	ci right 4.258341e-01	k: 4161	n:10000
GTF3C1   10000 perm   3 sec   (3178 perm/sec)   p_kst 4.161000e-01   p_cons 8.724000e-01   p_joint 6.208000e-01

Outputting figure to mutsig2_images.part000000000076/GTF3C1.10_6478_10000_0.4161_0.8724_0.6208.png
                gene_name: GTF3C1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 10 percent done.
GTF2IRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.887534e-02	ci left: 8.039987e-01	ci right 8.194193e-01	k: 8118	n:10000
Cons ci ratio: 2.577713e-02	ci left: 6.889954e-01	ci right 7.070891e-01	k: 6981	n:10000
KS ci ratio: 2.723572e-02	ci left: 6.651158e-01	ci right 6.835825e-01	k: 6744	n:10000
GTF2IRD1   10000 perm   2 sec   (4711 perm/sec)   p_kst 6.744000e-01   p_cons 6.981000e-01   p_joint 8.118000e-01

Outputting figure to mutsig2_images.part000000000076/GTF2IRD1.9_2984_10000_0.6744_0.6981_0.8118.png
                gene_name: GTF2IRD1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 12 percent done.
GUCY1B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.541639e-02	ci left: 3.241598e-01	ci right 3.427373e-01	k: 3334	n:10000
Cons ci ratio: 4.081055e-02	ci left: 4.699653e-01	ci right 4.896465e-01	k: 4798	n:10000
KS ci ratio: 7.353110e-02	ci left: 2.130972e-01	ci right 2.294655e-01	k: 2212	n:10000
GUCY1B3   10000 perm   2 sec   (5277 perm/sec)   p_kst 2.212000e-01   p_cons 4.798000e-01   p_joint 3.334000e-01

Outputting figure to mutsig2_images.part000000000076/GUCY1B3.9_1916_10000_0.2212_0.4798_0.3334.png
                gene_name: GUCY1B3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 14 percent done.
GUCY2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.200715e-02	ci left: 3.527710e-01	ci right 3.717094e-01	k: 3622	n:10000
Cons ci ratio: 2.266795e-02	ci left: 7.407845e-01	ci right 7.578701e-01	k: 7494	n:10000
KS ci ratio: 7.336085e-02	ci left: 2.138864e-01	ci right 2.302758e-01	k: 2220	n:10000
GUCY2C   10000 perm   3 sec   (3808 perm/sec)   p_kst 2.220000e-01   p_cons 7.494000e-01   p_joint 3.622000e-01

Outputting figure to mutsig2_images.part000000000076/GUCY2C.8_3330_10000_0.222_0.7494_0.3622.png
                gene_name: GUCY2C
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 16 percent done.
GUCY2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.673668e-01	ci left: 4.763334e-02	ci right 5.642994e-02	k: 519	n:10000
Cons ci ratio: 8.808495e-02	ci left: 1.579697e-01	ci right 1.726258e-01	k: 1652	n:10000
KS ci ratio: 2.083034e-01	ci left: 3.062918e-02	ci right 3.784546e-02	k: 341	n:10000
GUCY2D   10000 perm   2 sec   (4742 perm/sec)   p_kst 3.410000e-02   p_cons 1.652000e-01   p_joint 5.190000e-02

Joint ci ratio: 1.752676e-01	ci left: 2.225822e-02	ci right 2.658156e-02	k: 487	n:20000
Cons ci ratio: 6.346306e-02	ci left: 1.550919e-01	ci right 1.653071e-01	k: 3203	n:20000
KS ci ratio: 1.466316e-01	ci left: 3.196523e-02	ci right 3.707126e-02	k: 689	n:20000
GUCY2D   20000 perm   5 sec   (4034 perm/sec)   p_kst 3.445000e-02   p_cons 1.601500e-01   p_joint 2.435000e-02

Joint ci ratio: 1.201466e-01	ci left: 3.220433e-02	ci right 3.635316e-02	k: 1027	n:30000
Cons ci ratio: 5.167687e-02	ci left: 1.567584e-01	ci right 1.651073e-01	k: 4827	n:30000
KS ci ratio: 1.160583e-01	ci left: 3.450344e-02	ci right 3.878689e-02	k: 1098	n:30000
GUCY2D   30000 perm   8 sec   (3920 perm/sec)   p_kst 3.660000e-02   p_cons 1.609000e-01   p_joint 3.423333e-02

Joint ci ratio: 1.010962e-01	ci left: 3.439075e-02	ci right 3.807697e-02	k: 1448	n:40000
Cons ci ratio: 4.448757e-02	ci left: 1.589216e-01	ci right 1.661774e-01	k: 6501	n:40000
KS ci ratio: 1.055207e-01	ci left: 3.158754e-02	ci right 3.513063e-02	k: 1333	n:40000
GUCY2D   40000 perm   10 sec   (3839 perm/sec)   p_kst 3.332500e-02   p_cons 1.625250e-01   p_joint 3.620000e-02

Joint ci ratio: 1.037851e-01	ci left: 2.629849e-02	ci right 2.919669e-02	k: 1386	n:50000
Cons ci ratio: 3.980119e-02	ci left: 1.592364e-01	ci right 1.657228e-01	k: 8123	n:50000
KS ci ratio: 9.048170e-02	ci left: 3.454061e-02	ci right 3.783352e-02	k: 1808	n:50000
GUCY2D   50000 perm   13 sec   (3769 perm/sec)   p_kst 3.616000e-02   p_cons 1.624600e-01   p_joint 2.772000e-02

Joint ci ratio: 1.065352e-01	ci left: 2.088983e-02	ci right 2.325671e-02	k: 1323	n:60000
Cons ci ratio: 3.644683e-02	ci left: 1.586794e-01	ci right 1.645867e-01	k: 9697	n:60000
KS ci ratio: 8.193094e-02	ci left: 3.524231e-02	ci right 3.826938e-02	k: 2204	n:60000
GUCY2D   60000 perm   16 sec   (3708 perm/sec)   p_kst 3.673333e-02   p_cons 1.616167e-01   p_joint 2.205000e-02

Joint ci ratio: 6.238022e-02	ci left: 5.173179e-02	ci right 5.507678e-02	k: 3737	n:70000
Cons ci ratio: 3.500512e-02	ci left: 1.492626e-01	ci right 1.545948e-01	k: 10634	n:70000
KS ci ratio: 7.609169e-02	ci left: 3.513690e-02	ci right 3.793026e-02	k: 2556	n:70000
GUCY2D   70000 perm   19 sec   (3640 perm/sec)   p_kst 3.651429e-02   p_cons 1.519143e-01   p_joint 5.338571e-02

Outputting figure to mutsig2_images.part000000000076/GUCY2D.8_3384_70000_0.036514_0.15191_0.053386.png
                gene_name: GUCY2D
               theta_stop: 0.076 
                    nperm: 70000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.055 

Current progress: 18 percent done.
HACE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.479096e-02	ci left: 2.073764e-01	ci right 2.235897e-01	k: 2154	n:10000
Cons ci ratio: 1.146199e-02	ci left: 9.158488e-01	ci right 9.265043e-01	k: 9213	n:10000
KS ci ratio: 9.607845e-02	ci left: 1.358015e-01	ci right 1.496073e-01	k: 1426	n:10000
HACE1   10000 perm   2 sec   (4088 perm/sec)   p_kst 1.426000e-01   p_cons 9.213000e-01   p_joint 2.154000e-01

Outputting figure to mutsig2_images.part000000000076/HACE1.7_2826_10000_0.1426_0.9213_0.2154.png
                gene_name: HACE1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 20 percent done.
GTF3C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.747908e-02	ci left: 1.958434e-01	ci right 2.117295e-01	k: 2037	n:10000
Cons ci ratio: 1.714031e-01	ci left: 4.542628e-02	ci right 5.403844e-02	k: 496	n:10000
KS ci ratio: 5.572947e-02	ci left: 3.216780e-01	ci right 3.402206e-01	k: 3309	n:10000
GTF3C3   10000 perm   2 sec   (4709 perm/sec)   p_kst 3.309000e-01   p_cons 4.960000e-02   p_joint 2.037000e-01

Joint ci ratio: 8.303886e-02	ci left: 9.607192e-02	ci right 1.044447e-01	k: 2004	n:20000
Cons ci ratio: 1.217843e-01	ci left: 4.624321e-02	ci right 5.228870e-02	k: 984	n:20000
KS ci ratio: 3.980148e-02	ci left: 3.200514e-01	ci right 3.330991e-01	k: 6531	n:20000
GTF3C3   20000 perm   5 sec   (4276 perm/sec)   p_kst 3.265500e-01   p_cons 4.920000e-02   p_joint 1.002000e-01

Joint ci ratio: 5.964221e-02	ci left: 1.221000e-01	ci right 1.296393e-01	k: 3775	n:30000
Cons ci ratio: 1.075544e-01	ci left: 4.011513e-02	ci right 4.470736e-02	k: 1271	n:30000
KS ci ratio: 3.268337e-02	ci left: 3.187711e-01	ci right 3.293963e-01	k: 9722	n:30000
GTF3C3   30000 perm   7 sec   (4140 perm/sec)   p_kst 3.240667e-01   p_cons 4.236667e-02   p_joint 1.258333e-01

Joint ci ratio: 5.851539e-02	ci left: 9.791553e-02	ci right 1.038426e-01	k: 4034	n:40000
Cons ci ratio: 9.331766e-02	ci left: 4.027503e-02	ci right 4.424177e-02	k: 1689	n:40000
KS ci ratio: 2.818715e-02	ci left: 3.213070e-01	ci right 3.305183e-01	k: 13036	n:40000
GTF3C3   40000 perm   10 sec   (4037 perm/sec)   p_kst 3.259000e-01   p_cons 4.222500e-02   p_joint 1.008500e-01

Outputting figure to mutsig2_images.part000000000076/GTF3C3.6_2733_40000_0.3259_0.042225_0.10085.png
                gene_name: GTF3C3
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.10 

Current progress: 22 percent done.
GTF3C5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.431236e-02	ci left: 1.403092e-01	ci right 1.542969e-01	k: 1472	n:10000
Cons ci ratio: 1.736201e-01	ci left: 4.427577e-02	ci right 5.278970e-02	k: 484	n:10000
KS ci ratio: 4.618961e-02	ci left: 4.089058e-01	ci right 4.283416e-01	k: 4186	n:10000
GTF3C5   10000 perm   2 sec   (5372 perm/sec)   p_kst 4.186000e-01   p_cons 4.840000e-02   p_joint 1.472000e-01

Joint ci ratio: 6.732100e-02	ci left: 1.400485e-01	ci right 1.498550e-01	k: 2898	n:20000
Cons ci ratio: 1.252327e-01	ci left: 4.376838e-02	ci right 4.966431e-02	k: 933	n:20000
KS ci ratio: 3.318616e-02	ci left: 4.040698e-01	ci right 4.177562e-01	k: 8218	n:20000
GTF3C5   20000 perm   4 sec   (4752 perm/sec)   p_kst 4.109000e-01   p_cons 4.665000e-02   p_joint 1.449000e-01

Joint ci ratio: 5.681828e-02	ci left: 1.330289e-01	ci right 1.408416e-01	k: 4107	n:30000
Cons ci ratio: 1.108246e-01	ci left: 3.781053e-02	ci right 4.227910e-02	k: 1200	n:30000
KS ci ratio: 2.691893e-02	ci left: 4.085181e-01	ci right 4.196986e-01	k: 12423	n:30000
GTF3C5   30000 perm   7 sec   (4515 perm/sec)   p_kst 4.141000e-01   p_cons 4.000000e-02   p_joint 1.369000e-01

Joint ci ratio: 6.201158e-02	ci left: 8.800155e-02	ci right 9.365802e-02	k: 3632	n:40000
Cons ci ratio: 9.392864e-02	ci left: 3.976182e-02	ci right 4.370506e-02	k: 1668	n:40000
KS ci ratio: 2.253190e-02	ci left: 4.258650e-01	ci right 4.355950e-01	k: 17229	n:40000
GTF3C5   40000 perm   9 sec   (4374 perm/sec)   p_kst 4.307250e-01   p_cons 4.170000e-02   p_joint 9.080000e-02

Outputting figure to mutsig2_images.part000000000076/GTF3C5.6_1629_40000_0.43073_0.0417_0.0908.png
                gene_name: GTF3C5
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.094 

Current progress: 24 percent done.
GZMK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.608188e-03	ci left: 9.386903e-01	ci right 9.478494e-01	k: 9434	n:10000
KS ci ratio: 2.484493e-02	ci left: 7.044263e-01	ci right 7.222493e-01	k: 7134	n:10000
GZMK   10000 perm   2 sec   (5480 perm/sec)   p_kst 7.134000e-01   p_cons 9.434000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/GZMK.6_815_10000_0.7134_0.9434_1.png
                gene_name: GZMK
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
GTF3C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.680584e-02	ci left: 5.215616e-01	ci right 5.412201e-01	k: 5314	n:10000
Cons ci ratio: 1.022656e-01	ci left: 1.215110e-01	ci right 1.347065e-01	k: 1280	n:10000
KS ci ratio: 1.254905e-02	ci left: 9.012412e-01	ci right 9.127205e-01	k: 9071	n:10000
GTF3C2   10000 perm   2 sec   (4704 perm/sec)   p_kst 9.071000e-01   p_cons 1.280000e-01   p_joint 5.314000e-01

Joint ci ratio: 3.818446e-02	ci left: 3.384595e-01	ci right 3.516855e-01	k: 6901	n:20000
Cons ci ratio: 7.237878e-02	ci left: 1.232515e-01	ci right 1.325570e-01	k: 2557	n:20000
KS ci ratio: 8.755809e-03	ci left: 9.052352e-01	ci right 9.132454e-01	k: 18186	n:20000
GTF3C2   20000 perm   5 sec   (4278 perm/sec)   p_kst 9.093000e-01   p_cons 1.278500e-01   p_joint 3.450500e-01

Outputting figure to mutsig2_images.part000000000076/GTF3C2.5_2808_20000_0.9093_0.12785_0.34505.png
                gene_name: GTF3C2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 27 percent done.
GTF2H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.476226e-02	ci left: 3.294222e-01	ci right 3.480718e-01	k: 3387	n:10000
Cons ci ratio: 2.134564e-02	ci left: 7.629399e-01	ci right 7.795018e-01	k: 7713	n:10000
KS ci ratio: 8.585446e-02	ci left: 1.650429e-01	ci right 1.799484e-01	k: 1724	n:10000
GTF2H1   10000 perm   2 sec   (4718 perm/sec)   p_kst 1.724000e-01   p_cons 7.713000e-01   p_joint 3.387000e-01

Outputting figure to mutsig2_images.part000000000076/GTF2H1.4_1703_10000_0.1724_0.7713_0.3387.png
                gene_name: GTF2H1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 29 percent done.
GTF2H3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.486641e-02	ci left: 8.676433e-01	ci right 8.807378e-01	k: 8743	n:10000
KS ci ratio: 7.989211e-03	ci left: 9.561821e-01	ci right 9.639469e-01	k: 9602	n:10000
GTF2H3   10000 perm   2 sec   (5802 perm/sec)   p_kst 9.602000e-01   p_cons 8.743000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/GTF2H3.4_979_10000_0.9602_0.8743_1.png
                gene_name: GTF2H3
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
H2AFY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.310124e-02	ci left: 5.739652e-01	ci right 5.933860e-01	k: 5837	n:10000
KS ci ratio: 6.403001e-03	ci left: 9.707953e-01	ci right 9.771245e-01	k: 9741	n:10000
H2AFY   10000 perm   2 sec   (5963 perm/sec)   p_kst 9.741000e-01   p_cons 5.837000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/H2AFY.4_1246_10000_0.9741_0.5837_1.png
                gene_name: H2AFY
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
H2AFY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.971700e-02	ci left: 7.900960e-01	ci right 8.059300e-01	k: 7981	n:10000
Cons ci ratio: 4.673464e-02	ci left: 4.032266e-01	ci right 4.226242e-01	k: 4129	n:10000
KS ci ratio: 1.133519e-02	ci left: 9.174977e-01	ci right 9.280545e-01	k: 9229	n:10000
H2AFY2   10000 perm   2 sec   (4720 perm/sec)   p_kst 9.229000e-01   p_cons 4.129000e-01   p_joint 7.981000e-01

Outputting figure to mutsig2_images.part000000000076/H2AFY2.4_1151_10000_0.9229_0.4129_0.7981.png
                gene_name: H2AFY2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 35 percent done.
H6PD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.984961e-02	ci left: 3.724625e-01	ci right 3.916063e-01	k: 3820	n:10000
Cons ci ratio: 6.916798e-02	ci left: 2.346196e-01	ci right 2.515303e-01	k: 2430	n:10000
KS ci ratio: 5.152669e-02	ci left: 3.570460e-01	ci right 3.760318e-01	k: 3665	n:10000
H6PD   10000 perm   2 sec   (4739 perm/sec)   p_kst 3.665000e-01   p_cons 2.430000e-01   p_joint 3.820000e-01

Outputting figure to mutsig2_images.part000000000076/H6PD.4_2392_10000_0.3665_0.243_0.382.png
                gene_name: H6PD
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 37 percent done.
HACL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.314920e-02	ci left: 2.148731e-01	ci right 2.312886e-01	k: 2230	n:10000
Cons ci ratio: 5.195093e-02	ci left: 3.532680e-01	ci right 3.722120e-01	k: 3627	n:10000
KS ci ratio: 8.921899e-02	ci left: 1.545332e-01	ci right 1.690644e-01	k: 1617	n:10000
HACL1   10000 perm   2 sec   (5271 perm/sec)   p_kst 1.617000e-01   p_cons 3.627000e-01   p_joint 2.230000e-01

Outputting figure to mutsig2_images.part000000000076/HACL1.4_1805_10000_0.1617_0.3627_0.223.png
                gene_name: HACL1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 39 percent done.
HAL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.323539e-02	ci left: 2.687398e-01	ci right 2.863900e-01	k: 2775	n:10000
Cons ci ratio: 8.349549e-02	ci left: 1.730058e-01	ci right 1.881808e-01	k: 1805	n:10000
KS ci ratio: 5.710380e-02	ci left: 3.110592e-01	ci right 3.294457e-01	k: 3202	n:10000
HAL   10000 perm   2 sec   (5412 perm/sec)   p_kst 3.202000e-01   p_cons 1.805000e-01   p_joint 2.775000e-01

Outputting figure to mutsig2_images.part000000000076/HAL.4_2054_10000_0.3202_0.1805_0.2775.png
                gene_name: HAL
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 41 percent done.
GTPBP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.967418e-02	ci left: 7.908060e-01	ci right 8.066196e-01	k: 7988	n:10000
Cons ci ratio: 5.437344e-02	ci left: 3.326001e-01	ci right 3.512920e-01	k: 3419	n:10000
KS ci ratio: 7.148439e-03	ci left: 9.642561e-01	ci right 9.712679e-01	k: 9679	n:10000
GTPBP10   10000 perm   2 sec   (6019 perm/sec)   p_kst 9.679000e-01   p_cons 3.419000e-01   p_joint 7.988000e-01

Outputting figure to mutsig2_images.part000000000076/GTPBP10.3_1204_10000_0.9679_0.3419_0.7988.png
                gene_name: GTPBP10
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 43 percent done.
GTPBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.816792e-02	ci left: 2.399555e-01	ci right 2.569912e-01	k: 2484	n:10000
Cons ci ratio: 7.861921e-02	ci left: 1.912134e-01	ci right 2.069623e-01	k: 1990	n:10000
KS ci ratio: 5.798077e-02	ci left: 3.045120e-01	ci right 3.227967e-01	k: 3136	n:10000
GTPBP3   10000 perm   2 sec   (5950 perm/sec)   p_kst 3.136000e-01   p_cons 1.990000e-01   p_joint 2.484000e-01

Outputting figure to mutsig2_images.part000000000076/GTPBP3.3_1607_10000_0.3136_0.199_0.2484.png
                gene_name: GTPBP3
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 45 percent done.
GTPBP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.935912e-02	ci left: 6.311057e-01	ci right 6.500123e-01	k: 6406	n:10000
Cons ci ratio: 3.152538e-02	ci left: 5.975480e-01	ci right 6.167896e-01	k: 6072	n:10000
KS ci ratio: 5.087845e-02	ci left: 3.629130e-01	ci right 3.819614e-01	k: 3724	n:10000
GTPBP4   10000 perm   2 sec   (5970 perm/sec)   p_kst 3.724000e-01   p_cons 6.072000e-01   p_joint 6.406000e-01

Outputting figure to mutsig2_images.part000000000076/GTPBP4.3_1973_10000_0.3724_0.6072_0.6406.png
                gene_name: GTPBP4
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 47 percent done.
GUCA1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.754394e-02	ci left: 3.949592e-01	ci right 4.142964e-01	k: 4046	n:10000
Cons ci ratio: 3.042605e-02	ci left: 6.144213e-01	ci right 6.335064e-01	k: 6240	n:10000
KS ci ratio: 5.353840e-02	ci left: 3.395535e-01	ci right 3.583346e-01	k: 3489	n:10000
GUCA1B   10000 perm   1 sec   (6840 perm/sec)   p_kst 3.489000e-01   p_cons 6.240000e-01   p_joint 4.046000e-01

Outputting figure to mutsig2_images.part000000000076/GUCA1B.3_619_10000_0.3489_0.624_0.4046.png
                gene_name: GUCA1B
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 49 percent done.
GUF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.788103e-02	ci left: 3.915733e-01	ci right 4.108842e-01	k: 4012	n:10000
Cons ci ratio: 1.397872e-01	ci left: 6.778282e-02	ci right 7.806763e-02	k: 728	n:10000
KS ci ratio: 3.934331e-02	ci left: 4.882520e-01	ci right 5.079491e-01	k: 4981	n:10000
GUF1   10000 perm   2 sec   (5679 perm/sec)   p_kst 4.981000e-01   p_cons 7.280000e-02   p_joint 4.012000e-01

Joint ci ratio: 2.918248e-02	ci left: 4.673088e-01	ci right 4.811986e-01	k: 9485	n:20000
Cons ci ratio: 9.925096e-02	ci left: 6.874809e-02	ci right 7.597683e-02	k: 1446	n:20000
KS ci ratio: 2.798105e-02	ci left: 4.882969e-01	ci right 5.022045e-01	k: 9905	n:20000
GUF1   20000 perm   4 sec   (5051 perm/sec)   p_kst 4.952500e-01   p_cons 7.230000e-02   p_joint 4.742500e-01

Outputting figure to mutsig2_images.part000000000076/GUF1.3_2078_20000_0.49525_0.0723_0.47425.png
                gene_name: GUF1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 51 percent done.
GXYLT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.712477e-02	ci left: 5.172579e-01	ci right 5.369263e-01	k: 5271	n:10000
Cons ci ratio: 3.469341e-02	ci left: 5.509062e-01	ci right 5.704585e-01	k: 5607	n:10000
KS ci ratio: 4.678286e-02	ci left: 4.027284e-01	ci right 4.221226e-01	k: 4124	n:10000
GXYLT2   10000 perm   2 sec   (6325 perm/sec)   p_kst 4.124000e-01   p_cons 5.607000e-01   p_joint 5.271000e-01

Outputting figure to mutsig2_images.part000000000076/GXYLT2.3_1360_10000_0.4124_0.5607_0.5271.png
                gene_name: GXYLT2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 53 percent done.
GYG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.350978e-02	ci left: 2.131958e-01	ci right 2.295668e-01	k: 2213	n:10000
Cons ci ratio: 8.885890e-02	ci left: 1.556131e-01	ci right 1.701838e-01	k: 1628	n:10000
KS ci ratio: 6.075972e-02	ci left: 2.848834e-01	ci right 3.028368e-01	k: 2938	n:10000
GYG2   10000 perm   2 sec   (6226 perm/sec)   p_kst 2.938000e-01   p_cons 1.628000e-01   p_joint 2.213000e-01

Outputting figure to mutsig2_images.part000000000076/GYG2.3_1550_10000_0.2938_0.1628_0.2213.png
                gene_name: GYG2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 55 percent done.
GZF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.495916e-02	ci left: 4.220628e-01	ci right 4.415769e-01	k: 4318	n:10000
Cons ci ratio: 4.976527e-02	ci left: 3.732585e-01	ci right 3.924098e-01	k: 3828	n:10000
KS ci ratio: 5.736711e-02	ci left: 3.090749e-01	ci right 3.274310e-01	k: 3182	n:10000
GZF1   10000 perm   2 sec   (5840 perm/sec)   p_kst 3.182000e-01   p_cons 3.828000e-01   p_joint 4.318000e-01

Outputting figure to mutsig2_images.part000000000076/GZF1.3_2156_10000_0.3182_0.3828_0.4318.png
                gene_name: GZF1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 57 percent done.
GZMA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.960880e-02	ci left: 2.928118e-01	ci right 3.109038e-01	k: 3018	n:10000
Cons ci ratio: 4.696672e-02	ci left: 4.008357e-01	ci right 4.202165e-01	k: 4105	n:10000
KS ci ratio: 6.424362e-02	ci left: 2.625040e-01	ci right 2.800294e-01	k: 2712	n:10000
GZMA   10000 perm   1 sec   (6673 perm/sec)   p_kst 2.712000e-01   p_cons 4.105000e-01   p_joint 3.018000e-01

Outputting figure to mutsig2_images.part000000000076/GZMA.3_809_10000_0.2712_0.4105_0.3018.png
                gene_name: GZMA
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 59 percent done.
HABP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.686446e-02	ci left: 6.711587e-01	ci right 6.895361e-01	k: 6804	n:10000
Cons ci ratio: 5.953818e-02	ci left: 2.933074e-01	ci right 3.114079e-01	k: 3023	n:10000
KS ci ratio: 4.286896e-02	ci left: 4.455036e-01	ci right 4.651224e-01	k: 4553	n:10000
HABP2   10000 perm   2 sec   (5790 perm/sec)   p_kst 4.553000e-01   p_cons 3.023000e-01   p_joint 6.804000e-01

Outputting figure to mutsig2_images.part000000000076/HABP2.3_1735_10000_0.4553_0.3023_0.6804.png
                gene_name: HABP2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 61 percent done.
HADHA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.269027e-01	ci left: 8.154699e-02	ci right 9.269490e-02	k: 870	n:10000
Cons ci ratio: 1.171404e-01	ci left: 9.477139e-02	ci right 1.066624e-01	k: 1006	n:10000
KS ci ratio: 7.468054e-02	ci left: 2.078695e-01	ci right 2.240963e-01	k: 2159	n:10000
HADHA   10000 perm   2 sec   (5528 perm/sec)   p_kst 2.159000e-01   p_cons 1.006000e-01   p_joint 8.700000e-02

Joint ci ratio: 6.657079e-02	ci left: 1.428092e-01	ci right 1.526934e-01	k: 2954	n:20000
Cons ci ratio: 8.329303e-02	ci left: 9.553217e-02	ci right 1.038846e-01	k: 1993	n:20000
KS ci ratio: 5.194216e-02	ci left: 2.158598e-01	ci right 2.274212e-01	k: 4432	n:20000
HADHA   20000 perm   4 sec   (4883 perm/sec)   p_kst 2.216000e-01   p_cons 9.965000e-02   p_joint 1.477000e-01

Outputting figure to mutsig2_images.part000000000076/HADHA.3_2372_20000_0.2216_0.09965_0.1477.png
                gene_name: HADHA
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 63 percent done.
GTF3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.309509e-01	ci left: 2.476030e-02	ci right 3.131851e-02	k: 279	n:10000
Cons ci ratio: 2.432331e-02	ci left: 7.131053e-01	ci right 7.307652e-01	k: 7220	n:10000
KS ci ratio: 6.812237e-01	ci left: 2.189796e-03	ci right 4.514469e-03	k: 32	n:10000
GTF3A   10000 perm   1 sec   (6958 perm/sec)   p_kst 3.200000e-03   p_cons 7.220000e-01   p_joint 2.790000e-02

Joint ci ratio: 3.426791e-01	ci left: 5.387780e-03	ci right 7.659273e-03	k: 129	n:20000
Cons ci ratio: 1.719738e-02	ci left: 7.157843e-01	ci right 7.282511e-01	k: 14441	n:20000
KS ci ratio: 5.139616e-01	ci left: 2.159255e-03	ci right 3.690949e-03	k: 57	n:20000
GTF3A   20000 perm   3 sec   (5984 perm/sec)   p_kst 2.850000e-03   p_cons 7.220500e-01   p_joint 6.450000e-03

Joint ci ratio: 2.392788e-01	ci left: 7.805623e-03	ci right 9.957774e-03	k: 265	n:30000
Cons ci ratio: 1.406210e-02	ci left: 7.163561e-01	ci right 7.265343e-01	k: 21644	n:30000
KS ci ratio: 4.148955e-01	ci left: 2.353264e-03	ci right 3.612718e-03	k: 88	n:30000
GTF3A   30000 perm   5 sec   (5641 perm/sec)   p_kst 2.933333e-03   p_cons 7.214667e-01   p_joint 8.833333e-03

Joint ci ratio: 2.135928e-01	ci left: 7.457918e-03	ci right 9.264548e-03	k: 333	n:40000
Cons ci ratio: 1.220974e-02	ci left: 7.159985e-01	ci right 7.248194e-01	k: 28817	n:40000
KS ci ratio: 3.558198e-01	ci left: 2.487905e-03	ci right 3.586211e-03	k: 120	n:40000
GTF3A   40000 perm   7 sec   (5429 perm/sec)   p_kst 3.000000e-03   p_cons 7.204250e-01   p_joint 8.325000e-03

Joint ci ratio: 1.489652e-01	ci left: 1.264162e-02	ci right 1.469541e-02	k: 682	n:50000
Cons ci ratio: 1.090624e-02	ci left: 7.170058e-01	ci right 7.248885e-01	k: 36048	n:50000
KS ci ratio: 3.153926e-01	ci left: 2.594922e-03	ci right 3.584166e-03	k: 153	n:50000
GTF3A   50000 perm   10 sec   (5194 perm/sec)   p_kst 3.060000e-03   p_cons 7.209600e-01   p_joint 1.364000e-02

Joint ci ratio: 8.317237e-02	ci left: 3.421322e-02	ci right 3.719858e-02	k: 2141	n:60000
Cons ci ratio: 9.944708e-03	ci left: 7.178106e-01	ci right 7.250013e-01	k: 43285	n:60000
KS ci ratio: 2.869801e-01	ci left: 2.655564e-03	ci right 3.560224e-03	k: 185	n:60000
GTF3A   60000 perm   12 sec   (5061 perm/sec)   p_kst 3.083333e-03   p_cons 7.214167e-01   p_joint 3.568333e-02

Joint ci ratio: 6.989659e-02	ci left: 4.149502e-02	ci right 4.451444e-02	k: 3009	n:70000
Cons ci ratio: 9.224745e-03	ci left: 7.173028e-01	ci right 7.239646e-01	k: 50445	n:70000
KS ci ratio: 2.638688e-01	ci left: 2.728437e-03	ci right 3.570726e-03	k: 219	n:70000
GTF3A   70000 perm   14 sec   (4937 perm/sec)   p_kst 3.128571e-03   p_cons 7.206429e-01   p_joint 4.298571e-02

Joint ci ratio: 7.187308e-02	ci left: 3.456001e-02	ci right 3.714879e-02	k: 2867	n:80000
Cons ci ratio: 8.604707e-03	ci left: 7.186555e-01	ci right 7.248785e-01	k: 57742	n:80000
KS ci ratio: 2.470382e-01	ci left: 2.750099e-03	ci right 3.536617e-03	k: 250	n:80000
GTF3A   80000 perm   17 sec   (4819 perm/sec)   p_kst 3.125000e-03   p_cons 7.217750e-01   p_joint 3.583750e-02

Joint ci ratio: 7.421486e-02	ci left: 2.894968e-02	ci right 3.119185e-02	k: 2705	n:90000
Cons ci ratio: 8.093021e-03	ci left: 7.198072e-01	ci right 7.256673e-01	k: 65047	n:90000
KS ci ratio: 2.351659e-01	ci left: 2.715972e-03	ci right 3.449969e-03	k: 276	n:90000
GTF3A   90000 perm   19 sec   (4717 perm/sec)   p_kst 3.066667e-03   p_cons 7.227444e-01   p_joint 3.005556e-02

Joint ci ratio: 7.058412e-02	ci left: 2.886290e-02	ci right 3.098448e-02	k: 2991	n:100000
Cons ci ratio: 7.673205e-03	ci left: 7.201948e-01	ci right 7.257522e-01	k: 72298	n:100000
KS ci ratio: 2.252287e-01	ci left: 2.679957e-03	ci right 3.369369e-03	k: 301	n:100000
GTF3A   100000 perm   22 sec   (4617 perm/sec)   p_kst 3.010000e-03   p_cons 7.229800e-01   p_joint 2.991000e-02

Joint ci ratio: 6.975389e-02	ci left: 2.693470e-02	ci right 2.889030e-02	k: 3069	n:110000
Cons ci ratio: 7.325216e-03	ci left: 7.198253e-01	ci right 7.251266e-01	k: 79473	n:110000
KS ci ratio: 2.161219e-01	ci left: 2.659625e-03	ci right 3.312472e-03	k: 327	n:110000
GTF3A   110000 perm   24 sec   (4526 perm/sec)   p_kst 2.972727e-03   p_cons 7.224818e-01   p_joint 2.790000e-02

Joint ci ratio: 6.691895e-02	ci left: 2.686890e-02	ci right 2.873735e-02	k: 3335	n:120000
Cons ci ratio: 7.005321e-03	ci left: 7.204000e-01	ci right 7.254726e-01	k: 86753	n:120000
KS ci ratio: 2.071587e-01	ci left: 2.666852e-03	ci right 3.290884e-03	k: 356	n:120000
GTF3A   120000 perm   27 sec   (4439 perm/sec)   p_kst 2.966667e-03   p_cons 7.229417e-01   p_joint 2.779167e-02

Joint ci ratio: 6.169907e-02	ci left: 2.918542e-02	ci right 3.105100e-02	k: 3914	n:130000
Cons ci ratio: 6.730162e-03	ci left: 7.205200e-01	ci right 7.253932e-01	k: 93985	n:130000
KS ci ratio: 1.971865e-01	ci left: 2.731933e-03	ci right 3.336725e-03	k: 393	n:130000
GTF3A   130000 perm   30 sec   (4347 perm/sec)   p_kst 3.023077e-03   p_cons 7.229615e-01   p_joint 3.010769e-02

Joint ci ratio: 6.322798e-02	ci left: 2.587588e-02	ci right 2.757237e-02	k: 3740	n:140000
Cons ci ratio: 6.486807e-03	ci left: 7.205187e-01	ci right 7.252149e-01	k: 101202	n:140000
KS ci ratio: 1.916764e-01	ci left: 2.693079e-03	ci right 3.270668e-03	k: 416	n:140000
GTF3A   140000 perm   33 sec   (4259 perm/sec)   p_kst 2.971429e-03   p_cons 7.228714e-01   p_joint 2.671429e-02

Joint ci ratio: 6.097639e-02	ci left: 2.599511e-02	ci right 2.763658e-02	k: 4021	n:150000
Cons ci ratio: 6.255979e-03	ci left: 7.212958e-01	ci right 7.258289e-01	k: 108535	n:150000
KS ci ratio: 1.845126e-01	ci left: 2.723188e-03	ci right 3.282964e-03	k: 449	n:150000
GTF3A   150000 perm   36 sec   (4172 perm/sec)   p_kst 2.993333e-03   p_cons 7.235667e-01   p_joint 2.680667e-02

Joint ci ratio: 6.081980e-02	ci left: 2.453603e-02	ci right 2.608124e-02	k: 4048	n:160000
Cons ci ratio: 6.052658e-03	ci left: 7.216772e-01	ci right 7.260647e-01	k: 115820	n:160000
KS ci ratio: 1.803575e-01	ci left: 2.678239e-03	ci right 3.215023e-03	k: 470	n:160000
GTF3A   160000 perm   39 sec   (4096 perm/sec)   p_kst 2.937500e-03   p_cons 7.238750e-01   p_joint 2.530000e-02

Joint ci ratio: 5.911721e-02	ci left: 2.446592e-02	ci right 2.596210e-02	k: 4285	n:170000
Cons ci ratio: 5.875290e-03	ci left: 7.215145e-01	ci right 7.257720e-01	k: 123020	n:170000
KS ci ratio: 1.750492e-01	ci left: 2.683698e-03	ci right 3.204071e-03	k: 499	n:170000
GTF3A   170000 perm   42 sec   (4026 perm/sec)   p_kst 2.935294e-03   p_cons 7.236471e-01   p_joint 2.520588e-02

Joint ci ratio: 1.035778e-01	ci left: 7.485357e-03	ci right 8.308389e-03	k: 1420	n:180000
Cons ci ratio: 5.710507e-03	ci left: 7.215221e-01	ci right 7.256596e-01	k: 130247	n:180000
KS ci ratio: 1.701837e-01	ci left: 2.688755e-03	ci right 3.194131e-03	k: 528	n:180000
GTF3A   180000 perm   46 sec   (3956 perm/sec)   p_kst 2.933333e-03   p_cons 7.235944e-01   p_joint 7.888889e-03

Joint ci ratio: 1.005435e-01	ci left: 7.537608e-03	ci right 8.340672e-03	k: 1507	n:190000
Cons ci ratio: 5.557172e-03	ci left: 7.216516e-01	ci right 7.256784e-01	k: 137497	n:190000
KS ci ratio: 1.646698e-01	ci left: 2.728782e-03	ci right 3.223418e-03	k: 564	n:190000
GTF3A   190000 perm   49 sec   (3890 perm/sec)   p_kst 2.968421e-03   p_cons 7.236684e-01   p_joint 7.931579e-03

Joint ci ratio: 8.519348e-02	ci left: 1.002852e-02	ci right 1.092576e-02	k: 2094	n:200000
Cons ci ratio: 5.412852e-03	ci left: 7.219700e-01	ci right 7.258935e-01	k: 144787	n:200000
KS ci ratio: 1.595262e-01	ci left: 2.769844e-03	ci right 3.254738e-03	k: 601	n:200000
GTF3A   200000 perm   52 sec   (3826 perm/sec)   p_kst 3.005000e-03   p_cons 7.239350e-01   p_joint 1.047000e-02

Joint ci ratio: 8.418597e-02	ci left: 9.788631e-03	ci right 1.065354e-02	k: 2145	n:210000
Cons ci ratio: 5.278901e-03	ci left: 7.222831e-01	ci right 7.261107e-01	k: 152082	n:210000
KS ci ratio: 1.563155e-01	ci left: 2.752288e-03	ci right 3.223502e-03	k: 626	n:210000
GTF3A   210000 perm   56 sec   (3761 perm/sec)   p_kst 2.980952e-03   p_cons 7.242000e-01   p_joint 1.021429e-02

Joint ci ratio: 8.227242e-02	ci left: 9.793230e-03	ci right 1.063793e-02	k: 2246	n:220000
Cons ci ratio: 5.161522e-03	ci left: 7.220175e-01	ci right 7.257584e-01	k: 159256	n:220000
KS ci ratio: 1.530558e-01	ci left: 2.745160e-03	ci right 3.204454e-03	k: 653	n:220000
GTF3A   220000 perm   60 sec   (3697 perm/sec)   p_kst 2.968182e-03   p_cons 7.238909e-01   p_joint 1.020909e-02

Joint ci ratio: 9.185299e-02	ci left: 7.495495e-03	ci right 8.221338e-03	k: 1806	n:230000
Cons ci ratio: 5.048228e-03	ci left: 7.220462e-01	ci right 7.257047e-01	k: 166492	n:230000
KS ci ratio: 1.502132e-01	ci left: 2.730375e-03	ci right 3.177949e-03	k: 678	n:230000
GTF3A   230000 perm   63 sec   (3628 perm/sec)   p_kst 2.947826e-03   p_cons 7.238783e-01   p_joint 7.852174e-03

Joint ci ratio: 8.974088e-02	ci left: 7.533386e-03	ci right 8.245242e-03	k: 1892	n:240000
Cons ci ratio: 4.937806e-03	ci left: 7.224197e-01	ci right 7.259998e-01	k: 173811	n:240000
KS ci ratio: 1.464836e-01	ci left: 2.757033e-03	ci right 3.196773e-03	k: 713	n:240000
GTF3A   240000 perm   67 sec   (3572 perm/sec)   p_kst 2.970833e-03   p_cons 7.242125e-01   p_joint 7.883333e-03

Joint ci ratio: 8.794742e-02	ci left: 7.537119e-03	ci right 8.234363e-03	k: 1970	n:250000
Cons ci ratio: 4.838775e-03	ci left: 7.223954e-01	ci right 7.259034e-01	k: 181038	n:250000
KS ci ratio: 1.435967e-01	ci left: 2.758542e-03	ci right 3.189109e-03	k: 742	n:250000
GTF3A   250000 perm   71 sec   (3515 perm/sec)   p_kst 2.968000e-03   p_cons 7.241520e-01   p_joint 7.880000e-03

Joint ci ratio: 6.700631e-02	ci left: 1.255676e-02	ci right 1.343107e-02	k: 3377	n:260000
Cons ci ratio: 4.745199e-03	ci left: 7.223968e-01	ci right 7.258367e-01	k: 188271	n:260000
KS ci ratio: 1.404187e-01	ci left: 2.778570e-03	ci right 3.201860e-03	k: 776	n:260000
GTF3A   260000 perm   75 sec   (3461 perm/sec)   p_kst 2.984615e-03   p_cons 7.241192e-01   p_joint 1.298846e-02

Joint ci ratio: 4.736495e-02	ci left: 2.415442e-02	ci right 2.532988e-02	k: 6679	n:270000
Cons ci ratio: 4.654001e-03	ci left: 7.226436e-01	ci right 7.260183e-01	k: 195570	n:270000
KS ci ratio: 1.375277e-01	ci left: 2.793634e-03	ci right 3.209740e-03	k: 809	n:270000
GTF3A   270000 perm   79 sec   (3407 perm/sec)   p_kst 2.996296e-03   p_cons 7.243333e-01   p_joint 2.473704e-02

Joint ci ratio: 4.653353e-02	ci left: 2.414237e-02	ci right 2.529607e-02	k: 6920	n:280000
Cons ci ratio: 4.569784e-03	ci left: 7.227051e-01	ci right 7.260188e-01	k: 202822	n:280000
KS ci ratio: 1.354545e-01	ci left: 2.780097e-03	ci right 3.187441e-03	k: 834	n:280000
GTF3A   280000 perm   83 sec   (3358 perm/sec)   p_kst 2.978571e-03   p_cons 7.243643e-01   p_joint 2.471429e-02

Joint ci ratio: 7.278332e-02	ci left: 9.542845e-03	ci right 1.026700e-02	k: 2871	n:290000
Cons ci ratio: 4.491182e-03	ci left: 7.226558e-01	ci right 7.259121e-01	k: 210043	n:290000
KS ci ratio: 1.327773e-01	ci left: 2.797541e-03	ci right 3.198700e-03	k: 868	n:290000
GTF3A   290000 perm   88 sec   (3309 perm/sec)   p_kst 2.993103e-03   p_cons 7.242862e-01   p_joint 9.900000e-03

Joint ci ratio: 4.460643e-02	ci left: 2.453657e-02	ci right 2.565930e-02	k: 7528	n:300000
Cons ci ratio: 4.414916e-03	ci left: 7.227539e-01	ci right 7.259551e-01	k: 217307	n:300000
KS ci ratio: 1.306159e-01	ci left: 2.797771e-03	ci right 3.191927e-03	k: 897	n:300000
GTF3A   300000 perm   92 sec   (3258 perm/sec)   p_kst 2.990000e-03   p_cons 7.243567e-01   p_joint 2.509333e-02

Joint ci ratio: 4.384343e-02	ci left: 2.458727e-02	ci right 2.569260e-02	k: 7792	n:310000
Cons ci ratio: 4.341390e-03	ci left: 7.229397e-01	ci right 7.260883e-01	k: 224600	n:310000
KS ci ratio: 1.289762e-01	ci left: 2.779303e-03	ci right 3.165565e-03	k: 920	n:310000
GTF3A   310000 perm   96 sec   (3214 perm/sec)   p_kst 2.967742e-03   p_cons 7.245161e-01   p_joint 2.513548e-02

Joint ci ratio: 6.946615e-02	ci left: 9.510712e-03	ci right 1.019821e-02	k: 3152	n:320000
Cons ci ratio: 4.272989e-03	ci left: 7.229673e-01	ci right 7.260662e-01	k: 231846	n:320000
KS ci ratio: 1.273290e-01	ci left: 2.765044e-03	ci right 3.144046e-03	k: 944	n:320000
GTF3A   320000 perm   101 sec   (3168 perm/sec)   p_kst 2.950000e-03   p_cons 7.245187e-01   p_joint 9.850000e-03

Joint ci ratio: 4.270251e-02	ci left: 2.436802e-02	ci right 2.543428e-02	k: 8216	n:330000
Cons ci ratio: 4.208585e-03	ci left: 7.229115e-01	ci right 7.259633e-01	k: 239065	n:330000
KS ci ratio: 1.256783e-01	ci left: 2.754614e-03	ci right 3.126927e-03	k: 969	n:330000
GTF3A   330000 perm   106 sec   (3126 perm/sec)   p_kst 2.936364e-03   p_cons 7.244394e-01   p_joint 2.489697e-02

Joint ci ratio: 4.209024e-02	ci left: 2.435262e-02	ci right 2.540256e-02	k: 8457	n:340000
Cons ci ratio: 4.146275e-03	ci left: 7.229301e-01	ci right 7.259367e-01	k: 246308	n:340000
KS ci ratio: 1.245936e-01	ci left: 2.722028e-03	ci right 3.086526e-03	k: 986	n:340000
GTF3A   340000 perm   110 sec   (3082 perm/sec)   p_kst 2.900000e-03   p_cons 7.244353e-01   p_joint 2.487353e-02

Joint ci ratio: 4.125861e-02	ci left: 2.462386e-02	ci right 2.566402e-02	k: 8799	n:350000
Cons ci ratio: 4.088379e-03	ci left: 7.227791e-01	ci right 7.257429e-01	k: 253492	n:350000
KS ci ratio: 1.227420e-01	ci left: 2.727319e-03	ci right 3.086704e-03	k: 1016	n:350000
GTF3A   350000 perm   115 sec   (3039 perm/sec)   p_kst 2.902857e-03   p_cons 7.242629e-01   p_joint 2.514000e-02

Joint ci ratio: 6.570999e-02	ci left: 9.467109e-03	ci right 1.011304e-02	k: 3523	n:360000
Cons ci ratio: 4.033793e-03	ci left: 7.225421e-01	ci right 7.254654e-01	k: 260642	n:360000
KS ci ratio: 1.213197e-01	ci left: 2.716191e-03	ci right 3.069664e-03	k: 1040	n:360000
GTF3A   360000 perm   120 sec   (2999 perm/sec)   p_kst 2.888889e-03   p_cons 7.240056e-01   p_joint 9.786111e-03

Joint ci ratio: 6.484206e-02	ci left: 9.463807e-03	ci right 1.010066e-02	k: 3618	n:370000
Cons ci ratio: 3.978103e-03	ci left: 7.226432e-01	ci right 7.255263e-01	k: 267912	n:370000
KS ci ratio: 1.200022e-01	ci left: 2.703065e-03	ci right 3.050739e-03	k: 1063	n:370000
GTF3A   370000 perm   125 sec   (2957 perm/sec)   p_kst 2.872973e-03   p_cons 7.240865e-01   p_joint 9.778378e-03

Joint ci ratio: 6.390346e-02	ci left: 9.491810e-03	ci right 1.012096e-02	k: 3725	n:380000
Cons ci ratio: 3.926364e-03	ci left: 7.225652e-01	ci right 7.254104e-01	k: 275116	n:380000
KS ci ratio: 1.181828e-01	ci left: 2.716188e-03	ci right 3.059883e-03	k: 1096	n:380000
GTF3A   380000 perm   130 sec   (2920 perm/sec)   p_kst 2.884211e-03   p_cons 7.239895e-01   p_joint 9.802632e-03

Joint ci ratio: 3.924539e-02	ci left: 2.445385e-02	ci right 2.543528e-02	k: 9727	n:390000
Cons ci ratio: 3.874528e-03	ci left: 7.227045e-01	ci right 7.255126e-01	k: 282403	n:390000
KS ci ratio: 1.163405e-01	ci left: 2.733655e-03	ci right 3.073797e-03	k: 1131	n:390000
GTF3A   390000 perm   135 sec   (2883 perm/sec)   p_kst 2.900000e-03   p_cons 7.241103e-01   p_joint 2.494103e-02

Joint ci ratio: 3.856077e-02	ci left: 2.469915e-02	ci right 2.567275e-02	k: 10073	n:400000
Cons ci ratio: 3.827133e-03	ci left: 7.225818e-01	ci right 7.253550e-01	k: 289588	n:400000
KS ci ratio: 1.145326e-01	ci left: 2.752716e-03	ci right 3.089548e-03	k: 1167	n:400000
GTF3A   400000 perm   141 sec   (2847 perm/sec)   p_kst 2.917500e-03   p_cons 7.239700e-01   p_joint 2.518250e-02

Joint ci ratio: 3.806276e-02	ci left: 2.473689e-02	ci right 2.569911e-02	k: 10338	n:410000
Cons ci ratio: 3.778458e-03	ci left: 7.227804e-01	ci right 7.255189e-01	k: 296902	n:410000
KS ci ratio: 1.127594e-01	ci left: 2.773257e-03	ci right 3.106999e-03	k: 1204	n:410000
GTF3A   410000 perm   146 sec   (2810 perm/sec)   p_kst 2.936585e-03   p_cons 7.241512e-01   p_joint 2.521463e-02

Joint ci ratio: 3.763639e-02	ci left: 2.470449e-02	ci right 2.565445e-02	k: 10574	n:420000
Cons ci ratio: 3.734107e-03	ci left: 7.227002e-01	ci right 7.254062e-01	k: 304103	n:420000
KS ci ratio: 1.116537e-01	ci left: 2.762766e-03	ci right 3.091770e-03	k: 1228	n:420000
GTF3A   420000 perm   151 sec   (2773 perm/sec)   p_kst 2.923810e-03   p_cons 7.240548e-01   p_joint 2.517619e-02

Joint ci ratio: 3.718876e-02	ci left: 2.471975e-02	ci right 2.565875e-02	k: 10830	n:430000
Cons ci ratio: 3.689477e-03	ci left: 7.228196e-01	ci right 7.254936e-01	k: 311388	n:430000
KS ci ratio: 1.101838e-01	ci left: 2.773131e-03	ci right 3.098740e-03	k: 1261	n:430000
GTF3A   430000 perm   157 sec   (2740 perm/sec)   p_kst 2.932558e-03   p_cons 7.241581e-01   p_joint 2.518605e-02

Joint ci ratio: 3.678567e-02	ci left: 2.469609e-02	ci right 2.562381e-02	k: 11069	n:440000
Cons ci ratio: 3.647738e-03	ci left: 7.227881e-01	ci right 7.254317e-01	k: 318609	n:440000
KS ci ratio: 1.088125e-01	ci left: 2.780841e-03	ci right 3.103032e-03	k: 1293	n:440000
GTF3A   440000 perm   162 sec   (2708 perm/sec)   p_kst 2.938636e-03   p_cons 7.241114e-01   p_joint 2.515682e-02

Joint ci ratio: 3.636079e-02	ci left: 2.471979e-02	ci right 2.563745e-02	k: 11329	n:450000
Cons ci ratio: 3.607142e-03	ci left: 7.227849e-01	ci right 7.253989e-01	k: 325842	n:450000
KS ci ratio: 1.074912e-01	ci left: 2.788233e-03	ci right 3.107109e-03	k: 1325	n:450000
GTF3A   450000 perm   168 sec   (2677 perm/sec)   p_kst 2.944444e-03   p_cons 7.240933e-01   p_joint 2.517556e-02

Joint ci ratio: 3.601411e-02	ci left: 2.465632e-02	ci right 2.556272e-02	k: 11549	n:460000
Cons ci ratio: 3.568610e-03	ci left: 7.226992e-01	ci right 7.252850e-01	k: 333037	n:460000
KS ci ratio: 1.063742e-01	ci left: 2.786861e-03	ci right 3.102060e-03	k: 1353	n:460000
GTF3A   460000 perm   174 sec   (2647 perm/sec)   p_kst 2.941304e-03   p_cons 7.239935e-01   p_joint 2.510652e-02

Joint ci ratio: 3.563835e-02	ci left: 2.464832e-02	ci right 2.554478e-02	k: 11794	n:470000
Cons ci ratio: 3.531569e-03	ci left: 7.225853e-01	ci right 7.251438e-01	k: 340217	n:470000
KS ci ratio: 1.054828e-01	ci left: 2.775205e-03	ci right 3.086292e-03	k: 1376	n:470000
GTF3A   470000 perm   180 sec   (2618 perm/sec)   p_kst 2.927660e-03   p_cons 7.238660e-01   p_joint 2.509362e-02

Joint ci ratio: 3.528313e-02	ci left: 2.462831e-02	ci right 2.551493e-02	k: 12033	n:480000
Cons ci ratio: 3.495547e-03	ci left: 7.224889e-01	ci right 7.250209e-01	k: 347403	n:480000
KS ci ratio: 1.042407e-01	ci left: 2.784335e-03	ci right 3.092546e-03	k: 1409	n:480000
GTF3A   480000 perm   185 sec   (2588 perm/sec)   p_kst 2.935417e-03   p_cons 7.237562e-01   p_joint 2.506875e-02

Joint ci ratio: 3.493249e-02	ci left: 2.461726e-02	ci right 2.549449e-02	k: 12276	n:490000
Cons ci ratio: 3.460570e-03	ci left: 7.224007e-01	ci right 7.249069e-01	k: 354591	n:490000
KS ci ratio: 1.033291e-01	ci left: 2.777208e-03	ci right 3.081778e-03	k: 1434	n:490000
GTF3A   490000 perm   191 sec   (2560 perm/sec)   p_kst 2.926531e-03   p_cons 7.236551e-01   p_joint 2.505306e-02

Joint ci ratio: 3.457228e-02	ci left: 2.463445e-02	ci right 2.550307e-02	k: 12533	n:500000
Cons ci ratio: 3.424925e-03	ci left: 7.225143e-01	ci right 7.249951e-01	k: 361878	n:500000
KS ci ratio: 1.020910e-01	ci left: 2.789866e-03	ci right 3.091939e-03	k: 1469	n:500000
GTF3A   500000 perm   197 sec   (2532 perm/sec)   p_kst 2.938000e-03   p_cons 7.237560e-01   p_joint 2.506600e-02

Joint ci ratio: 3.423122e-02	ci left: 2.463934e-02	ci right 2.549940e-02	k: 12784	n:510000
Cons ci ratio: 3.390908e-03	ci left: 7.225589e-01	ci right 7.250151e-01	k: 369132	n:510000
KS ci ratio: 1.011326e-01	ci left: 2.788670e-03	ci right 3.087610e-03	k: 1497	n:510000
GTF3A   510000 perm   204 sec   (2503 perm/sec)   p_kst 2.935294e-03   p_cons 7.237882e-01   p_joint 2.506667e-02

Joint ci ratio: 3.387208e-02	ci left: 2.468414e-02	ci right 2.553654e-02	k: 13056	n:520000
Cons ci ratio: 3.358837e-03	ci left: 7.224882e-01	ci right 7.249209e-01	k: 376327	n:520000
KS ci ratio: 1.002335e-01	ci left: 2.785657e-03	ci right 3.081463e-03	k: 1524	n:520000
GTF3A   520000 perm   210 sec   (2474 perm/sec)   p_kst 2.930769e-03   p_cons 7.237058e-01   p_joint 2.510769e-02

Joint ci ratio: 3.354855e-02	ci left: 2.469174e-02	ci right 2.553610e-02	k: 13309	n:530000
Cons ci ratio: 3.327534e-03	ci left: 7.224354e-01	ci right 7.248452e-01	k: 383530	n:530000
KS ci ratio: 9.913407e-02	ci left: 2.795649e-03	ci right 3.089071e-03	k: 1558	n:530000
GTF3A   530000 perm   217 sec   (2448 perm/sec)   p_kst 2.939623e-03   p_cons 7.236415e-01   p_joint 2.511132e-02

Outputting figure to mutsig2_images.part000000000076/GTF3A.2_1134_530000_0.0029396_0.72364_0.025111.png
                gene_name: GTF3A
               theta_stop: 0.099 
                    nperm: 530000 
                     p_ks: 0.0029 
        ci_ks_bounds_left: 0.0028 
       ci_ks_bounds_right: 0.0031 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.026 

Current progress: 65 percent done.
GTPBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.108126e-02	ci left: 4.666691e-01	ci right 4.863446e-01	k: 4765	n:10000
KS ci ratio: 2.670404e-02	ci left: 6.737778e-01	ci right 6.921155e-01	k: 6830	n:10000
GTPBP1   10000 perm   2 sec   (6270 perm/sec)   p_kst 6.830000e-01   p_cons 4.765000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/GTPBP1.2_2058_10000_0.683_0.4765_1.png
                gene_name: GTPBP1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
GTPBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.224974e-03	ci left: 9.430505e-01	ci right 9.518865e-01	k: 9476	n:10000
KS ci ratio: 3.062084e-02	ci left: 6.114073e-01	ci right 6.305221e-01	k: 6210	n:10000
GTPBP2   10000 perm   2 sec   (6179 perm/sec)   p_kst 6.210000e-01   p_cons 9.476000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/GTPBP2.2_1857_10000_0.621_0.9476_1.png
                gene_name: GTPBP2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
GTSE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.219310e-02	ci left: 1.776288e-01	ci right 1.929550e-01	k: 1852	n:10000
Cons ci ratio: 6.120178e-02	ci left: 2.819111e-01	ci right 2.998108e-01	k: 2908	n:10000
KS ci ratio: 7.738372e-02	ci left: 1.962376e-01	ci right 2.121351e-01	k: 2041	n:10000
GTSE1   10000 perm   2 sec   (5935 perm/sec)   p_kst 2.041000e-01   p_cons 2.908000e-01   p_joint 1.852000e-01

Outputting figure to mutsig2_images.part000000000076/GTSE1.2_2264_10000_0.2041_0.2908_0.1852.png
                gene_name: GTSE1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 71 percent done.
GUCA1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.230335e-03	ci left: 9.798420e-01	ci right 9.850715e-01	k: 9826	n:10000
Cons ci ratio: 3.488391e-02	ci left: 5.482006e-01	ci right 5.677656e-01	k: 5580	n:10000
KS ci ratio: 1.494741e-02	ci left: 8.664173e-01	ci right 8.795646e-01	k: 8731	n:10000
GUCA1A   10000 perm   1 sec   (6803 perm/sec)   p_kst 8.731000e-01   p_cons 5.580000e-01   p_joint 9.826000e-01

Outputting figure to mutsig2_images.part000000000076/GUCA1A.2_622_10000_0.8731_0.558_0.9826.png
                gene_name: GUCA1A
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 73 percent done.
GUCA2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.251928e-02	ci left: 9.016521e-01	ci right 9.131093e-01	k: 9075	n:10000
KS ci ratio: 2.532550e-02	ci left: 6.964572e-01	ci right 7.144230e-01	k: 7055	n:10000
GUCA2B   10000 perm   1 sec   (7643 perm/sec)   p_kst 7.055000e-01   p_cons 9.075000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/GUCA2B.2_351_10000_0.7055_0.9075_1.png
                gene_name: GUCA2B
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
GULP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.120740e-02	ci left: 9.191472e-01	ci right 9.296040e-01	k: 9245	n:10000
Cons ci ratio: 1.890621e-02	ci left: 8.034910e-01	ci right 8.189273e-01	k: 8113	n:10000
KS ci ratio: 1.471055e-02	ci left: 8.699939e-01	ci right 8.829859e-01	k: 8766	n:10000
GULP1   10000 perm   2 sec   (6347 perm/sec)   p_kst 8.766000e-01   p_cons 8.113000e-01   p_joint 9.245000e-01

Outputting figure to mutsig2_images.part000000000076/GULP1.2_955_10000_0.8766_0.8113_0.9245.png
                gene_name: GULP1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 76 percent done.
GUSB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.610965e-02	ci left: 5.310723e-01	ci right 5.507039e-01	k: 5409	n:10000
KS ci ratio: 2.325932e-02	ci left: 7.308797e-01	ci right 7.481806e-01	k: 7396	n:10000
GUSB   10000 perm   2 sec   (5814 perm/sec)   p_kst 7.396000e-01   p_cons 5.409000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/GUSB.2_2004_10000_0.7396_0.5409_1.png
                gene_name: GUSB
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
GXYLT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.194384e-03	ci left: 9.917226e-01	ci right 9.949800e-01	k: 9935	n:10000
Cons ci ratio: 3.604427e-02	ci left: 5.319735e-01	ci right 5.516021e-01	k: 5418	n:10000
KS ci ratio: 1.073529e-02	ci left: 9.251327e-01	ci right 9.352150e-01	k: 9303	n:10000
GXYLT1   10000 perm   2 sec   (6248 perm/sec)   p_kst 9.303000e-01   p_cons 5.418000e-01   p_joint 9.935000e-01

Outputting figure to mutsig2_images.part000000000076/GXYLT1.2_1355_10000_0.9303_0.5418_0.9935.png
                gene_name: GXYLT1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 80 percent done.
GYLTL1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.838216e-02	ci left: 1.302192e-01	ci right 1.437930e-01	k: 1369	n:10000
Cons ci ratio: 1.382589e-01	ci left: 6.923436e-02	ci right 7.961519e-02	k: 743	n:10000
KS ci ratio: 1.443060e-02	ci left: 8.741858e-01	ci right 8.869915e-01	k: 8807	n:10000
GYLTL1B   10000 perm   2 sec   (5777 perm/sec)   p_kst 8.807000e-01   p_cons 7.430000e-02   p_joint 1.369000e-01

Joint ci ratio: 7.642427e-02	ci left: 1.117897e-01	ci right 1.207222e-01	k: 2324	n:20000
Cons ci ratio: 9.819427e-02	ci left: 7.016491e-02	ci right 7.745958e-02	k: 1475	n:20000
KS ci ratio: 1.014456e-02	ci left: 8.773467e-01	ci right 8.863419e-01	k: 17638	n:20000
GYLTL1B   20000 perm   4 sec   (5134 perm/sec)   p_kst 8.819000e-01   p_cons 7.375000e-02   p_joint 1.162000e-01

Outputting figure to mutsig2_images.part000000000076/GYLTL1B.2_2218_20000_0.8819_0.07375_0.1162.png
                gene_name: GYLTL1B
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 82 percent done.
GYPB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.974550e-03	ci left: 9.658346e-01	ci right 9.726884e-01	k: 9694	n:10000
Cons ci ratio: 1.061076e-02	ci left: 9.266822e-01	ci right 9.366646e-01	k: 9318	n:10000
KS ci ratio: 5.771256e-02	ci left: 3.064958e-01	ci right 3.248117e-01	k: 3156	n:10000
GYPB   10000 perm   2 sec   (6600 perm/sec)   p_kst 3.156000e-01   p_cons 9.318000e-01   p_joint 9.694000e-01

Outputting figure to mutsig2_images.part000000000076/GYPB.2_296_10000_0.3156_0.9318_0.9694.png
                gene_name: GYPB
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 84 percent done.
GYS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.768949e-02	ci left: 6.577660e-01	ci right 6.763366e-01	k: 6671	n:10000
Cons ci ratio: 5.386991e-02	ci left: 3.367719e-01	ci right 3.555178e-01	k: 3461	n:10000
KS ci ratio: 7.096209e-02	ci left: 2.254342e-01	ci right 2.421211e-01	k: 2337	n:10000
GYS1   10000 perm   2 sec   (5811 perm/sec)   p_kst 2.337000e-01   p_cons 3.461000e-01   p_joint 6.671000e-01

Outputting figure to mutsig2_images.part000000000076/GYS1.2_2278_10000_0.2337_0.3461_0.6671.png
                gene_name: GYS1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 86 percent done.
GZMB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.150350e-02	ci left: 4.615758e-01	ci right 4.812409e-01	k: 4714	n:10000
Cons ci ratio: 5.795385e-02	ci left: 3.047104e-01	ci right 3.229982e-01	k: 3138	n:10000
KS ci ratio: 8.869635e-02	ci left: 1.561040e-01	ci right 1.706926e-01	k: 1633	n:10000
GZMB   10000 perm   1 sec   (6810 perm/sec)   p_kst 1.633000e-01   p_cons 3.138000e-01   p_joint 4.714000e-01

Outputting figure to mutsig2_images.part000000000076/GZMB.2_764_10000_0.1633_0.3138_0.4714.png
                gene_name: GZMB
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 88 percent done.
H2BFWT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.223374e-01	ci left: 4.145961e-03	ci right 7.153063e-03	k: 55	n:10000
Cons ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
KS ci ratio: 2.385065e-01	ci left: 2.315796e-02	ci right 2.952203e-02	k: 262	n:10000
H2BFWT   10000 perm   1 sec   (6821 perm/sec)   p_kst 2.620000e-02   p_cons 2.810000e-02   p_joint 5.500000e-03

Joint ci ratio: 1.908840e-01	ci left: 1.867638e-02	ci right 2.266469e-02	k: 412	n:20000
Cons ci ratio: 1.673511e-01	ci left: 2.446191e-02	ci right 2.897711e-02	k: 533	n:20000
KS ci ratio: 1.756369e-01	ci left: 2.216252e-02	ci right 2.647729e-02	k: 485	n:20000
H2BFWT   20000 perm   3 sec   (6016 perm/sec)   p_kst 2.425000e-02   p_cons 2.665000e-02   p_joint 2.060000e-02

Joint ci ratio: 1.487213e-01	ci left: 2.094787e-02	ci right 2.434544e-02	k: 678	n:30000
Cons ci ratio: 1.383377e-01	ci left: 2.426080e-02	ci right 2.789843e-02	k: 781	n:30000
KS ci ratio: 1.445296e-01	ci left: 2.220120e-02	ci right 2.569183e-02	k: 717	n:30000
H2BFWT   30000 perm   5 sec   (5660 perm/sec)   p_kst 2.390000e-02   p_cons 2.603333e-02   p_joint 2.260000e-02

Joint ci ratio: 1.707803e-01	ci left: 1.188895e-02	ci right 1.413257e-02	k: 519	n:40000
Cons ci ratio: 1.200806e-01	ci left: 2.438968e-02	ci right 2.752965e-02	k: 1037	n:40000
KS ci ratio: 1.260691e-01	ci left: 2.211033e-02	ci right 2.510938e-02	k: 943	n:40000
H2BFWT   40000 perm   7 sec   (5457 perm/sec)   p_kst 2.357500e-02   p_cons 2.592500e-02   p_joint 1.297500e-02

Joint ci ratio: 1.177072e-01	ci left: 2.042129e-02	ci right 2.299466e-02	k: 1084	n:50000
Cons ci ratio: 1.066674e-01	ci left: 2.489541e-02	ci right 2.771995e-02	k: 1314	n:50000
KS ci ratio: 1.133020e-01	ci left: 2.205379e-02	ci right 2.472194e-02	k: 1168	n:50000
H2BFWT   50000 perm   9 sec   (5295 perm/sec)   p_kst 2.336000e-02   p_cons 2.628000e-02   p_joint 2.168000e-02

Joint ci ratio: 1.065764e-01	ci left: 2.087360e-02	ci right 2.323961e-02	k: 1322	n:60000
Cons ci ratio: 9.794896e-02	ci left: 2.472504e-02	ci right 2.728775e-02	k: 1559	n:60000
KS ci ratio: 1.034227e-01	ci left: 2.217268e-02	ci right 2.460706e-02	k: 1402	n:60000
H2BFWT   60000 perm   12 sec   (5157 perm/sec)   p_kst 2.336667e-02   p_cons 2.598333e-02   p_joint 2.203333e-02

Joint ci ratio: 9.836160e-02	ci left: 2.109337e-02	ci right 2.328934e-02	k: 1552	n:70000
Cons ci ratio: 9.070880e-02	ci left: 2.480573e-02	ci right 2.717664e-02	k: 1818	n:70000
KS ci ratio: 9.547752e-02	ci left: 2.239044e-02	ci right 2.464929e-02	k: 1645	n:70000
H2BFWT   70000 perm   14 sec   (5030 perm/sec)   p_kst 2.350000e-02   p_cons 2.597143e-02   p_joint 2.217143e-02

Outputting figure to mutsig2_images.part000000000076/H2BFWT.2_536_70000_0.0235_0.025971_0.022171.png
                gene_name: H2BFWT
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 90 percent done.
H3F3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.781130e-02	ci left: 8.213734e-01	ci right 8.362346e-01	k: 8289	n:10000
Cons ci ratio: 5.744651e-02	ci left: 3.084797e-01	ci right 3.268266e-01	k: 3176	n:10000
KS ci ratio: 3.904550e-02	ci left: 4.920509e-01	ci right 5.117480e-01	k: 5019	n:10000
H3F3C   10000 perm   1 sec   (7007 perm/sec)   p_kst 5.019000e-01   p_cons 3.176000e-01   p_joint 8.289000e-01

Outputting figure to mutsig2_images.part000000000076/H3F3C.2_412_10000_0.5019_0.3176_0.8289.png
                gene_name: H3F3C
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 92 percent done.
HAAO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.144362e-03	ci left: 9.546142e-01	ci right 9.625159e-01	k: 9587	n:10000
KS ci ratio: 2.207059e-02	ci left: 7.507962e-01	ci right 7.676526e-01	k: 7593	n:10000
HAAO   10000 perm   1 sec   (6769 perm/sec)   p_kst 7.593000e-01   p_cons 9.587000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/HAAO.2_901_10000_0.7593_0.9587_1.png
                gene_name: HAAO
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
HADHB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.731880e-02	ci left: 5.146560e-01	ci right 5.343297e-01	k: 5245	n:10000
Cons ci ratio: 3.903769e-02	ci left: 4.921509e-01	ci right 5.118480e-01	k: 5020	n:10000
KS ci ratio: 7.281323e-02	ci left: 2.164518e-01	ci right 2.329089e-01	k: 2246	n:10000
HADHB   10000 perm   2 sec   (6509 perm/sec)   p_kst 2.246000e-01   p_cons 5.020000e-01   p_joint 5.245000e-01

Outputting figure to mutsig2_images.part000000000076/HADHB.2_1485_10000_0.2246_0.502_0.5245.png
                gene_name: HADHB
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 96 percent done.
HAND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.556899e-02	ci left: 4.154834e-01	ci right 4.349602e-01	k: 4252	n:10000
KS ci ratio: 5.314023e-02	ci left: 3.429316e-01	ci right 3.617544e-01	k: 3523	n:10000
HAND1   10000 perm   1 sec   (7262 perm/sec)   p_kst 3.523000e-01   p_cons 4.252000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000076/HAND1.2_656_10000_0.3523_0.4252_1.png
                gene_name: HAND1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
HAND2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.090642e-02	ci left: 2.838926e-01	ci right 3.018282e-01	k: 2928	n:10000
Cons ci ratio: 3.667305e-02	ci left: 5.233633e-01	ci right 5.430173e-01	k: 5332	n:10000
KS ci ratio: 1.046689e-01	ci left: 1.165255e-01	ci right 1.294950e-01	k: 1229	n:10000
HAND2   10000 perm   2 sec   (6528 perm/sec)   p_kst 1.229000e-01   p_cons 5.332000e-01   p_joint 2.928000e-01

Joint ci ratio: 3.613848e-02	ci left: 3.636517e-01	ci right 3.770860e-01	k: 7407	n:20000
Cons ci ratio: 2.608499e-02	ci left: 5.233542e-01	ci right 5.372370e-01	k: 10606	n:20000
KS ci ratio: 7.372326e-02	ci left: 1.192654e-01	ci right 1.284443e-01	k: 2476	n:20000
HAND2   20000 perm   3 sec   (5766 perm/sec)   p_kst 1.238000e-01   p_cons 5.303000e-01   p_joint 3.703500e-01

Outputting figure to mutsig2_images.part000000000076/HAND2.2_662_20000_0.1238_0.5303_0.37035.png
                gene_name: HAND2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000076
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 76 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1655>
Subject: Job 9893963: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1655>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000077> was used as the working directory.
Started at Sat Oct  6 00:10:45 2012
Results reported at Sat Oct  6 01:53:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000077.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000077.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 77  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000077.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   6259.19 sec.
    Max Memory :      3541 MB
    Max Swap   :      5932 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
77
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 77
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 77: processing genes 6852 - 6942
Calculating significance of each gene.
Using projection method.
6852	HAO1	5.395223e-02
6853	HAO2	1.847005e-01
6854	HAP1	4.872769e-01
6855	HAPLN1	1.083037e-02
6856	HAPLN2	6.403986e-01
6857	HAPLN3	3.572192e-01
6858	HAPLN4	2.317176e-01
6859	HARBI1	7.487965e-01
6860	HARS	8.910176e-01
6861	HARS2	1.783375e-01
6862	HAS1	1.085231e-02
6863	HAS2	5.667241e-01
6864	HAS3	5.630094e-01
6865	HAT1	6.598538e-01
6866	HAUS1	3.358378e-01
6867	HAUS2	4.861963e-01
6868	HAUS3	5.481004e-01
6869	HAUS4	1
6870	HAUS5	8.201594e-01
6871	HAUS6	4.326590e-01
6872	HAUS7	1
6873	HAUS8	6.130105e-01
6874	HAVCR1	4.418259e-01
6875	HAVCR2	1.137059e-01
6876	HAX1	6.080356e-01
6877	HBA1	1
6878	HBA2	1
6879	HBB	6.854728e-02
6880	HBD	4.020494e-01
6881	HBE1	4.009324e-02
6882	HBEGF	6.478577e-01
6883	HBG1	1
6884	HBG2	1
6885	HBM	1
6886	HBP1	3.626254e-01
6887	HBQ1	1
6888	HBS1L	8.226623e-01
6889	HBXIP	3.093147e-01
6890	HCCS	5.027557e-02
6891	HCFC1	1
6892	HCFC1R1	2.253571e-01
6893	HCFC2	4.711861e-01
6894	HCK	6.802758e-01
In gene HCLS1 the following bins exceed PROBCAP:
    COAD-AA-3548	categ 6	N = 1513    n = 1	mu =   1.03e-07
    COAD-AA-A00K	categ 6	N = 1513    n = 1	mu =   5.86e-07
6895	HCLS1	3.707794e-03
6896	HCN1	1.846243e-03
6897	HCN2	1
6898	HCN3	9.137978e-01
6899	HCN4	2.604312e-01
6900	HCRTR1	7.567397e-01
6901	HCRTR2	8.792261e-01
6902	HCST	1
6903	HDAC1	5.988374e-01
6904	HDAC10	1
6905	HDAC11	7.929441e-01
6906	HDAC2	5.498244e-01
6907	HDAC3	4.739788e-01
6908	HDAC4	7.682550e-01
6909	HDAC5	9.926096e-01
6910	HDAC6	8.699319e-01
6911	HDAC7	6.778864e-01
6912	HDAC8	1
6913	HDAC9	1.023647e-02
6914	HDC	5.283643e-02
6915	HDDC2	5.996677e-01
6916	HDDC3	1
6917	HDGF	5.845711e-01
6918	HDGFL1	2.919528e-01
6919	HDGFRP2	1
6920	HDGFRP3	1.938363e-01
6921	HDHD1A	1
6922	HDHD2	1
6923	HDHD3	2.809040e-01
6924	HDLBP	2.187159e-01
6925	HDX	2.974793e-02
6926	HEATR1	7.311397e-02
6927	HEATR2	8.808199e-01
6928	HEATR3	5.215556e-01
6929	HEATR4	3.893817e-01
6930	HEATR5A	8.339857e-01
6931	HEATR5B	4.511216e-01
6932	HEATR6	9.363163e-01
6933	HEATR7A	1
6934	HEATR7B2	7.617780e-01
6935	HEBP1	1.638541e-01
6936	HEBP2	5.522767e-01
6937	HECA	4.411940e-01
6938	HECTD1	9.282595e-01
6939	HECTD2	1.876576e-01
6940	HECTD3	5.071260e-01
6941	HECW1	7.319676e-01
6942	HECW2	1.214019e-01
Done

Running MutSig 2:
Scatter job 77: processing genes 6852 - 6942
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HEATR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.707466e-02	ci left: 6.677342e-01	ci right 6.861626e-01	k: 6770	n:10000
Cons ci ratio: 3.553915e-02	ci left: 5.389839e-01	ci right 5.585876e-01	k: 5488	n:10000
KS ci ratio: 3.455280e-02	ci left: 5.529105e-01	ci right 5.724530e-01	k: 5627	n:10000
HEATR1   10000 perm   3 sec   (3902 perm/sec)   p_kst 5.627000e-01   p_cons 5.488000e-01   p_joint 6.770000e-01

Outputting figure to mutsig2_images.part000000000077/HEATR1.16_6611_10000_0.5627_0.5488_0.677.png
                gene_name: HEATR1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 2 percent done.
HCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.846095e-01	ci left: 4.932166e-03	ci right 8.165407e-03	k: 64	n:10000
Cons ci ratio: 4.135393e-02	ci left: 4.633733e-01	ci right 4.830423e-01	k: 4732	n:10000
KS ci ratio: 1.238931e+00	ci left: 4.116173e-04	ci right 1.707790e-03	k: 9	n:10000
HCN1   10000 perm   2 sec   (4465 perm/sec)   p_kst 9.000000e-04   p_cons 4.732000e-01   p_joint 6.400000e-03

Joint ci ratio: 3.949987e-01	ci left: 3.934731e-03	ci right 5.913431e-03	k: 97	n:20000
Cons ci ratio: 2.972042e-02	ci left: 4.582178e-01	ci right 4.720923e-01	k: 9303	n:20000
KS ci ratio: 9.503118e-01	ci left: 4.573361e-04	ci right 1.298826e-03	k: 16	n:20000
HCN1   20000 perm   5 sec   (4082 perm/sec)   p_kst 8.000000e-04   p_cons 4.651500e-01   p_joint 4.850000e-03

Joint ci ratio: 4.490775e-01	ci left: 1.966901e-03	ci right 3.132778e-03	k: 75	n:30000
Cons ci ratio: 2.428436e-02	ci left: 4.591431e-01	ci right 4.704637e-01	k: 13944	n:30000
KS ci ratio: 8.990099e-01	ci left: 3.556356e-04	ci right 9.480936e-04	k: 18	n:30000
HCN1   30000 perm   8 sec   (3914 perm/sec)   p_kst 6.000000e-04   p_cons 4.648000e-01   p_joint 2.500000e-03

Joint ci ratio: 4.298239e-01	ci left: 1.630748e-03	ci right 2.543961e-03	k: 82	n:40000
Cons ci ratio: 2.101426e-02	ci left: 4.603021e-01	ci right 4.701029e-01	k: 18608	n:40000
KS ci ratio: 8.171313e-01	ci left: 3.447132e-04	ci right 8.325889e-04	k: 22	n:40000
HCN1   40000 perm   10 sec   (3823 perm/sec)   p_kst 5.500000e-04   p_cons 4.652000e-01   p_joint 2.050000e-03

Joint ci ratio: 2.562061e-01	ci left: 4.063232e-03	ci right 5.275381e-03	k: 232	n:50000
Cons ci ratio: 1.878002e-02	ci left: 4.612399e-01	ci right 4.700041e-01	k: 23281	n:50000
KS ci ratio: 7.685677e-01	ci left: 3.235989e-04	ci right 7.380108e-04	k: 25	n:50000
HCN1   50000 perm   13 sec   (3745 perm/sec)   p_kst 5.000000e-04   p_cons 4.656200e-01   p_joint 4.640000e-03

Joint ci ratio: 2.421116e-01	ci left: 3.823514e-03	ci right 4.891969e-03	k: 260	n:60000
Cons ci ratio: 1.716693e-02	ci left: 4.609525e-01	ci right 4.689509e-01	k: 27897	n:60000
KS ci ratio: 7.277437e-01	ci left: 3.101183e-04	ci right 6.743932e-04	k: 28	n:60000
HCN1   60000 perm   16 sec   (3674 perm/sec)   p_kst 4.666667e-04   p_cons 4.649500e-01   p_joint 4.333333e-03

Joint ci ratio: 2.426545e-01	ci left: 3.263761e-03	ci right 4.178137e-03	k: 259	n:70000
Cons ci ratio: 1.590017e-02	ci left: 4.610425e-01	ci right 4.684462e-01	k: 32532	n:70000
KS ci ratio: 6.928013e-01	ci left: 3.009192e-04	ci right 6.285420e-04	k: 31	n:70000
HCN1   70000 perm   19 sec   (3608 perm/sec)   p_kst 4.428571e-04   p_cons 4.647429e-01   p_joint 3.700000e-03

Joint ci ratio: 2.364085e-01	ci left: 3.020242e-03	ci right 3.841420e-03	k: 273	n:80000
Cons ci ratio: 1.491500e-02	ci left: 4.598897e-01	ci right 4.668130e-01	k: 37068	n:80000
KS ci ratio: 6.275454e-01	ci left: 3.361595e-04	ci right 6.519169e-04	k: 38	n:80000
HCN1   80000 perm   22 sec   (3564 perm/sec)   p_kst 4.750000e-04   p_cons 4.633500e-01   p_joint 3.412500e-03

Joint ci ratio: 2.290269e-01	ci left: 2.872975e-03	ci right 3.626272e-03	k: 291	n:90000
Cons ci ratio: 1.407255e-02	ci left: 4.597158e-01	ci right 4.662421e-01	k: 41668	n:90000
KS ci ratio: 5.842097e-01	ci left: 3.552492e-04	ci right 6.562556e-04	k: 44	n:90000
HCN1   90000 perm   26 sec   (3520 perm/sec)   p_kst 4.888889e-04   p_cons 4.629778e-01   p_joint 3.233333e-03

Joint ci ratio: 1.677651e-01	ci left: 4.974335e-03	ci right 5.894709e-03	k: 542	n:100000
Cons ci ratio: 1.332944e-02	ci left: 4.606653e-01	ci right 4.668568e-01	k: 46376	n:100000
KS ci ratio: 5.778366e-01	ci left: 3.282514e-04	ci right 6.020896e-04	k: 45	n:100000
HCN1   100000 perm   29 sec   (3476 perm/sec)   p_kst 4.500000e-04   p_cons 4.637600e-01   p_joint 5.420000e-03

Joint ci ratio: 1.733477e-01	ci left: 4.226078e-03	ci right 5.036744e-03	k: 508	n:110000
Cons ci ratio: 1.270185e-02	ci left: 4.610948e-01	ci right 4.669980e-01	k: 51045	n:110000
KS ci ratio: 5.598727e-01	ci left: 3.217571e-04	ci right 5.785137e-04	k: 48	n:110000
HCN1   110000 perm   32 sec   (3433 perm/sec)   p_kst 4.363636e-04   p_cons 4.640455e-01   p_joint 4.618182e-03

Joint ci ratio: 1.721962e-01	ci left: 3.929663e-03	ci right 4.677937e-03	k: 515	n:120000
Cons ci ratio: 1.216609e-02	ci left: 4.610168e-01	ci right 4.666682e-01	k: 55661	n:120000
KS ci ratio: 5.190912e-01	ci left: 3.525336e-04	ci right 6.059633e-04	k: 56	n:120000
HCN1   120000 perm   35 sec   (3381 perm/sec)   p_kst 4.666667e-04   p_cons 4.638417e-01   p_joint 4.291667e-03

Joint ci ratio: 1.769341e-01	ci left: 3.428682e-03	ci right 4.101443e-03	k: 488	n:130000
Cons ci ratio: 1.167823e-02	ci left: 4.615782e-01	ci right 4.670080e-01	k: 60358	n:130000
KS ci ratio: 4.977199e-01	ci left: 3.589428e-04	ci right 6.027063e-04	k: 61	n:130000
HCN1   130000 perm   39 sec   (3333 perm/sec)   p_kst 4.692308e-04   p_cons 4.642923e-01   p_joint 3.753846e-03

Joint ci ratio: 1.694699e-01	ci left: 3.484451e-03	ci right 4.136365e-03	k: 532	n:140000
Cons ci ratio: 1.125148e-02	ci left: 4.617633e-01	ci right 4.669953e-01	k: 65013	n:140000
KS ci ratio: 4.787879e-01	ci left: 3.646210e-04	ci right 5.997342e-04	k: 66	n:140000
HCN1   140000 perm   43 sec   (3285 perm/sec)   p_kst 4.714286e-04   p_cons 4.643786e-01   p_joint 3.800000e-03

Joint ci ratio: 1.643125e-01	ci left: 3.469352e-03	ci right 4.096736e-03	k: 566	n:150000
Cons ci ratio: 1.086485e-02	ci left: 4.620867e-01	ci right 4.671413e-01	k: 69692	n:150000
KS ci ratio: 4.684187e-01	ci left: 3.579245e-04	ci right 5.821239e-04	k: 69	n:150000
HCN1   150000 perm   46 sec   (3239 perm/sec)   p_kst 4.600000e-04   p_cons 4.646133e-01   p_joint 3.773333e-03

Joint ci ratio: 1.727940e-01	ci left: 2.929174e-03	ci right 3.489067e-03	k: 512	n:160000
Cons ci ratio: 1.052542e-02	ci left: 4.619038e-01	ci right 4.667975e-01	k: 74296	n:160000
KS ci ratio: 4.586952e-01	ci left: 3.521134e-04	ci right 5.666675e-04	k: 72	n:160000
HCN1   160000 perm   50 sec   (3196 perm/sec)   p_kst 4.500000e-04   p_cons 4.643500e-01   p_joint 3.200000e-03

Joint ci ratio: 1.679539e-01	ci left: 2.925816e-03	ci right 3.467817e-03	k: 542	n:170000
Cons ci ratio: 1.021944e-02	ci left: 4.615741e-01	ci right 4.663212e-01	k: 78871	n:170000
KS ci ratio: 4.525414e-01	ci left: 3.418145e-04	ci right 5.464415e-04	k: 74	n:170000
HCN1   170000 perm   54 sec   (3158 perm/sec)   p_kst 4.352941e-04   p_cons 4.639471e-01   p_joint 3.188235e-03

Joint ci ratio: 1.627881e-01	ci left: 2.949671e-03	ci right 3.477640e-03	k: 577	n:180000
Cons ci ratio: 9.927020e-03	ci left: 4.618661e-01	ci right 4.664795e-01	k: 83551	n:180000
KS ci ratio: 4.409364e-01	ci left: 3.425466e-04	ci right 5.407905e-04	k: 78	n:180000
HCN1   180000 perm   58 sec   (3120 perm/sec)   p_kst 4.333333e-04   p_cons 4.641722e-01   p_joint 3.205556e-03

Joint ci ratio: 1.612698e-01	ci left: 2.849961e-03	ci right 3.354862e-03	k: 588	n:190000
Cons ci ratio: 9.662943e-03	ci left: 4.618923e-01	ci right 4.663824e-01	k: 88186	n:190000
KS ci ratio: 4.276114e-01	ci left: 3.479569e-04	ci right 5.415032e-04	k: 83	n:190000
HCN1   190000 perm   62 sec   (3084 perm/sec)   p_kst 4.368421e-04   p_cons 4.641368e-01   p_joint 3.094737e-03

Joint ci ratio: 1.611452e-01	ci left: 2.712245e-03	ci right 3.192341e-03	k: 589	n:200000
Cons ci ratio: 9.414241e-03	ci left: 4.621623e-01	ci right 4.665387e-01	k: 92870	n:200000
KS ci ratio: 4.085932e-01	ci left: 3.663529e-04	ci right 5.586102e-04	k: 91	n:200000
HCN1   200000 perm   66 sec   (3047 perm/sec)   p_kst 4.550000e-04   p_cons 4.643500e-01   p_joint 2.945000e-03

Joint ci ratio: 1.566919e-01	ci left: 2.738560e-03	ci right 3.208659e-03	k: 623	n:210000
Cons ci ratio: 9.190661e-03	ci left: 4.620366e-01	ci right 4.663073e-01	k: 97476	n:210000
KS ci ratio: 4.042257e-01	ci left: 3.574573e-04	ci right 5.425029e-04	k: 93	n:210000
HCN1   210000 perm   70 sec   (3012 perm/sec)   p_kst 4.428571e-04   p_cons 4.641714e-01   p_joint 2.966667e-03

Joint ci ratio: 1.532910e-01	ci left: 2.736417e-03	ci right 3.195016e-03	k: 651	n:220000
Cons ci ratio: 8.966953e-03	ci left: 4.627731e-01	ci right 4.669460e-01	k: 102269	n:220000
KS ci ratio: 3.938853e-01	ci left: 3.616559e-04	ci right 5.428400e-04	k: 98	n:220000
HCN1   220000 perm   74 sec   (2977 perm/sec)   p_kst 4.454545e-04   p_cons 4.648591e-01   p_joint 2.959091e-03

Joint ci ratio: 1.683353e-01	ci left: 2.154156e-03	ci right 2.554202e-03	k: 540	n:230000
Cons ci ratio: 8.769441e-03	ci left: 4.628425e-01	ci right 4.669236e-01	k: 106923	n:230000
KS ci ratio: 3.880509e-01	ci left: 3.576927e-04	ci right 5.335581e-04	k: 101	n:230000
HCN1   230000 perm   78 sec   (2944 perm/sec)   p_kst 4.391304e-04   p_cons 4.648826e-01   p_joint 2.347826e-03

Joint ci ratio: 1.765456e-01	ci left: 1.869015e-03	ci right 2.234844e-03	k: 491	n:240000
Cons ci ratio: 8.587236e-03	ci left: 4.627446e-01	ci right 4.667396e-01	k: 111538	n:240000
KS ci ratio: 3.771165e-01	ci left: 3.653851e-04	ci right 5.387189e-04	k: 107	n:240000
HCN1   240000 perm   82 sec   (2912 perm/sec)   p_kst 4.458333e-04   p_cons 4.647417e-01   p_joint 2.045833e-03

Joint ci ratio: 1.744342e-01	ci left: 1.840144e-03	ci right 2.195560e-03	k: 503	n:250000
Cons ci ratio: 8.412416e-03	ci left: 4.628633e-01	ci right 4.667775e-01	k: 116205	n:250000
KS ci ratio: 3.670572e-01	ci left: 3.725260e-04	ci right 5.434038e-04	k: 113	n:250000
HCN1   250000 perm   87 sec   (2881 perm/sec)   p_kst 4.520000e-04   p_cons 4.648200e-01   p_joint 2.012000e-03

Joint ci ratio: 1.715658e-01	ci left: 1.831922e-03	ci right 2.179329e-03	k: 520	n:260000
Cons ci ratio: 8.243331e-03	ci left: 4.632466e-01	ci right 4.670849e-01	k: 120943	n:260000
KS ci ratio: 3.638810e-01	ci left: 3.651837e-04	ci right 5.308999e-04	k: 115	n:260000
HCN1   260000 perm   91 sec   (2850 perm/sec)   p_kst 4.423077e-04   p_cons 4.651654e-01   p_joint 2.000000e-03

Joint ci ratio: 1.747951e-01	ci left: 1.696742e-03	ci right 2.025210e-03	k: 501	n:270000
Cons ci ratio: 8.094156e-03	ci left: 4.629802e-01	ci right 4.667465e-01	k: 125513	n:270000
KS ci ratio: 3.592659e-01	ci left: 3.617601e-04	ci right 5.233534e-04	k: 118	n:270000
HCN1   270000 perm   96 sec   (2821 perm/sec)   p_kst 4.370370e-04   p_cons 4.648630e-01   p_joint 1.855556e-03

Joint ci ratio: 1.749756e-01	ci left: 1.632724e-03	ci right 1.949159e-03	k: 500	n:280000
Cons ci ratio: 7.951594e-03	ci left: 4.628084e-01	ci right 4.665066e-01	k: 130104	n:280000
KS ci ratio: 3.562860e-01	ci left: 3.553407e-04	ci right 5.124449e-04	k: 120	n:280000
HCN1   280000 perm   100 sec   (2787 perm/sec)   p_kst 4.285714e-04   p_cons 4.646571e-01   p_joint 1.785714e-03

Joint ci ratio: 1.936945e-01	ci left: 1.273759e-03	ci right 1.550152e-03	k: 408	n:290000
Cons ci ratio: 7.813003e-03	ci left: 4.628593e-01	ci right 4.664932e-01	k: 134756	n:290000
KS ci ratio: 3.221392e-01	ci left: 4.282835e-04	ci right 5.957548e-04	k: 147	n:290000
HCN1   290000 perm   105 sec   (2754 perm/sec)   p_kst 5.068966e-04   p_cons 4.646759e-01   p_joint 1.406897e-03

Joint ci ratio: 1.915995e-01	ci left: 1.259853e-03	ci right 1.529927e-03	k: 417	n:300000
Cons ci ratio: 7.682083e-03	ci left: 4.628640e-01	ci right 4.664367e-01	k: 139395	n:300000
KS ci ratio: 3.158010e-01	ci left: 4.324066e-04	ci right 5.974918e-04	k: 153	n:300000
HCN1   300000 perm   110 sec   (2726 perm/sec)   p_kst 5.100000e-04   p_cons 4.646500e-01   p_joint 1.390000e-03

Joint ci ratio: 1.889077e-01	ci left: 1.256078e-03	ci right 1.521126e-03	k: 429	n:310000
Cons ci ratio: 7.557483e-03	ci left: 4.628721e-01	ci right 4.663867e-01	k: 144035	n:310000
KS ci ratio: 3.107960e-01	ci left: 4.333191e-04	ci right 5.956109e-04	k: 158	n:310000
HCN1   310000 perm   115 sec   (2699 perm/sec)   p_kst 5.096774e-04   p_cons 4.646290e-01   p_joint 1.383871e-03

Joint ci ratio: 1.880381e-01	ci left: 1.228734e-03	ci right 1.486682e-03	k: 433	n:320000
Cons ci ratio: 7.438474e-03	ci left: 4.628989e-01	ci right 4.663580e-01	k: 148681	n:320000
KS ci ratio: 3.050924e-01	ci left: 4.370794e-04	ci right 5.971921e-04	k: 164	n:320000
HCN1   320000 perm   120 sec   (2673 perm/sec)   p_kst 5.125000e-04   p_cons 4.646281e-01   p_joint 1.353125e-03

Joint ci ratio: 1.869666e-01	ci left: 1.205939e-03	ci right 1.457495e-03	k: 438	n:330000
Cons ci ratio: 7.320189e-03	ci left: 4.632456e-01	ci right 4.666520e-01	k: 153433	n:330000
KS ci ratio: 2.954019e-01	ci left: 4.546585e-04	ci right 6.149306e-04	k: 175	n:330000
HCN1   330000 perm   125 sec   (2645 perm/sec)   p_kst 5.303030e-04   p_cons 4.649485e-01   p_joint 1.327273e-03

Joint ci ratio: 1.850803e-01	ci left: 1.195707e-03	ci right 1.442330e-03	k: 447	n:340000
Cons ci ratio: 7.210351e-03	ci left: 4.633664e-01	ci right 4.667224e-01	k: 158115	n:340000
KS ci ratio: 2.921018e-01	ci left: 4.521840e-04	ci right 6.094737e-04	k: 179	n:340000
HCN1   340000 perm   130 sec   (2619 perm/sec)   p_kst 5.264706e-04   p_cons 4.650441e-01   p_joint 1.314706e-03

Joint ci ratio: 1.820571e-01	ci left: 1.202432e-03	ci right 1.445944e-03	k: 462	n:350000
Cons ci ratio: 7.109843e-03	ci left: 4.631636e-01	ci right 4.664712e-01	k: 162686	n:350000
KS ci ratio: 2.873516e-01	ci left: 4.551618e-04	ci right 6.104451e-04	k: 185	n:350000
HCN1   350000 perm   135 sec   (2592 perm/sec)   p_kst 5.285714e-04   p_cons 4.648171e-01   p_joint 1.320000e-03

Joint ci ratio: 1.797430e-01	ci left: 1.200855e-03	ci right 1.440620e-03	k: 474	n:360000
Cons ci ratio: 7.011112e-03	ci left: 4.631363e-01	ci right 4.663976e-01	k: 167316	n:360000
KS ci ratio: 2.828258e-01	ci left: 4.579937e-04	ci right 6.113432e-04	k: 191	n:360000
HCN1   360000 perm   140 sec   (2566 perm/sec)   p_kst 5.305556e-04   p_cons 4.647667e-01   p_joint 1.316667e-03

Joint ci ratio: 1.956491e-01	ci left: 9.777689e-04	ci right 1.192330e-03	k: 400	n:370000
Cons ci ratio: 6.915632e-03	ci left: 4.631648e-01	ci right 4.663817e-01	k: 171966	n:370000
KS ci ratio: 2.792137e-01	ci left: 4.581768e-04	ci right 6.092838e-04	k: 196	n:370000
HCN1   370000 perm   146 sec   (2541 perm/sec)   p_kst 5.297297e-04   p_cons 4.647730e-01   p_joint 1.081081e-03

Joint ci ratio: 1.930196e-01	ci left: 9.795773e-04	ci right 1.191307e-03	k: 411	n:380000
Cons ci ratio: 6.824238e-03	ci left: 4.631711e-01	ci right 4.663453e-01	k: 176608	n:380000
KS ci ratio: 2.737105e-01	ci left: 4.657132e-04	ci right 6.157579e-04	k: 204	n:380000
HCN1   380000 perm   151 sec   (2517 perm/sec)   p_kst 5.368421e-04   p_cons 4.647579e-01   p_joint 1.081579e-03

Joint ci ratio: 1.958992e-01	ci left: 9.251860e-04	ci right 1.128499e-03	k: 399	n:390000
Cons ci ratio: 6.735749e-03	ci left: 4.632234e-01	ci right 4.663566e-01	k: 181268	n:390000
KS ci ratio: 2.710791e-01	ci left: 4.633278e-04	ci right 6.109245e-04	k: 208	n:390000
HCN1   390000 perm   156 sec   (2493 perm/sec)   p_kst 5.333333e-04   p_cons 4.647897e-01   p_joint 1.023077e-03

Joint ci ratio: 1.939697e-01	ci left: 9.210801e-04	ci right 1.121261e-03	k: 407	n:400000
Cons ci ratio: 6.650782e-03	ci left: 4.632609e-01	ci right 4.663546e-01	k: 185923	n:400000
KS ci ratio: 2.697924e-01	ci left: 4.564054e-04	ci right 6.009900e-04	k: 210	n:400000
HCN1   400000 perm   162 sec   (2466 perm/sec)   p_kst 5.250000e-04   p_cons 4.648075e-01   p_joint 1.017500e-03

Joint ci ratio: 1.914064e-01	ci left: 9.241499e-04	ci right 1.122035e-03	k: 418	n:410000
Cons ci ratio: 6.571303e-03	ci left: 4.631187e-01	ci right 4.661745e-01	k: 190505	n:410000
KS ci ratio: 2.666516e-01	ci left: 4.566487e-04	ci right 5.993449e-04	k: 215	n:410000
HCN1   410000 perm   168 sec   (2444 perm/sec)   p_kst 5.243902e-04   p_cons 4.646463e-01   p_joint 1.019512e-03

Joint ci ratio: 1.885038e-01	ci left: 9.316272e-04	ci right 1.127742e-03	k: 431	n:420000
Cons ci ratio: 6.490878e-03	ci left: 4.632692e-01	ci right 4.662884e-01	k: 195207	n:420000
KS ci ratio: 2.624326e-01	ci left: 4.613378e-04	ci right 6.028439e-04	k: 222	n:420000
HCN1   420000 perm   173 sec   (2421 perm/sec)   p_kst 5.285714e-04   p_cons 4.647786e-01   p_joint 1.026190e-03

Joint ci ratio: 1.855209e-01	ci left: 9.409958e-04	ci right 1.135596e-03	k: 445	n:430000
Cons ci ratio: 6.416242e-03	ci left: 4.631874e-01	ci right 4.661712e-01	k: 199812	n:430000
KS ci ratio: 2.572909e-01	ci left: 4.701764e-04	ci right 6.111143e-04	k: 231	n:430000
HCN1   430000 perm   179 sec   (2400 perm/sec)   p_kst 5.372093e-04   p_cons 4.646791e-01   p_joint 1.034884e-03

Joint ci ratio: 1.863615e-01	ci left: 9.109405e-04	ci right 1.100275e-03	k: 441	n:440000
Cons ci ratio: 6.344297e-03	ci left: 4.630959e-01	ci right 4.660455e-01	k: 204411	n:440000
KS ci ratio: 2.551015e-01	ci left: 4.679976e-04	ci right 6.068988e-04	k: 235	n:440000
HCN1   440000 perm   185 sec   (2378 perm/sec)   p_kst 5.340909e-04   p_cons 4.645705e-01   p_joint 1.002273e-03

Joint ci ratio: 1.869999e-01	ci left: 8.843411e-04	ci right 1.068848e-03	k: 438	n:450000
Cons ci ratio: 6.273653e-03	ci left: 4.630930e-01	ci right 4.660096e-01	k: 209048	n:450000
KS ci ratio: 2.529671e-01	ci left: 4.659206e-04	ci right 6.028659e-04	k: 239	n:450000
HCN1   450000 perm   191 sec   (2357 perm/sec)   p_kst 5.311111e-04   p_cons 4.645511e-01   p_joint 9.733333e-04

Joint ci ratio: 1.857357e-01	ci left: 8.775509e-04	ci right 1.059264e-03	k: 444	n:460000
Cons ci ratio: 6.206972e-03	ci left: 4.629579e-01	ci right 4.658425e-01	k: 213624	n:460000
KS ci ratio: 2.514014e-01	ci left: 4.619014e-04	ci right 5.966934e-04	k: 242	n:460000
HCN1   460000 perm   197 sec   (2336 perm/sec)   p_kst 5.260870e-04   p_cons 4.644000e-01   p_joint 9.652174e-04

Joint ci ratio: 1.878624e-01	ci left: 8.385963e-04	ci right 1.014458e-03	k: 434	n:470000
Cons ci ratio: 6.141374e-03	ci left: 4.629095e-01	ci right 4.657633e-01	k: 218238	n:470000
KS ci ratio: 2.483538e-01	ci left: 4.640403e-04	ci right 5.975614e-04	k: 248	n:470000
HCN1   470000 perm   203 sec   (2316 perm/sec)   p_kst 5.276596e-04   p_cons 4.643362e-01   p_joint 9.234043e-04

Joint ci ratio: 1.870056e-01	ci left: 8.290675e-04	ci right 1.002048e-03	k: 438	n:480000
Cons ci ratio: 6.076692e-03	ci left: 4.629550e-01	ci right 4.657788e-01	k: 222896	n:480000
KS ci ratio: 2.473632e-01	ci left: 4.582805e-04	ci right 5.895375e-04	k: 250	n:480000
HCN1   480000 perm   209 sec   (2296 perm/sec)   p_kst 5.208333e-04   p_cons 4.643667e-01   p_joint 9.125000e-04

Joint ci ratio: 1.865825e-01	ci left: 8.160380e-04	ci right 9.858710e-04	k: 440	n:490000
Cons ci ratio: 6.013889e-03	ci left: 4.630089e-01	ci right 4.658038e-01	k: 227559	n:490000
KS ci ratio: 2.468730e-01	ci left: 4.508421e-04	ci right 5.796734e-04	k: 251	n:490000
HCN1   490000 perm   215 sec   (2276 perm/sec)   p_kst 5.122449e-04   p_cons 4.644061e-01   p_joint 8.979592e-04

Joint ci ratio: 1.845021e-01	ci left: 8.187884e-04	ci right 9.870814e-04	k: 450	n:500000
Cons ci ratio: 5.954669e-03	ci left: 4.629208e-01	ci right 4.656876e-01	k: 232152	n:500000
KS ci ratio: 2.444598e-01	ci left: 4.512097e-04	ci right 5.786943e-04	k: 256	n:500000
HCN1   500000 perm   221 sec   (2258 perm/sec)   p_kst 5.120000e-04   p_cons 4.643040e-01   p_joint 9.000000e-04

Joint ci ratio: 1.824899e-01	ci left: 8.214411e-04	ci right 9.882342e-04	k: 460	n:510000
Cons ci ratio: 5.894492e-03	ci left: 4.630618e-01	ci right 4.658013e-01	k: 236860	n:510000
KS ci ratio: 2.411966e-01	ci left: 4.552530e-04	ci right 5.819061e-04	k: 263	n:510000
HCN1   510000 perm   228 sec   (2239 perm/sec)   p_kst 5.156863e-04   p_cons 4.644314e-01   p_joint 9.019608e-04

Joint ci ratio: 1.682905e-01	ci left: 9.545916e-04	ci right 1.131812e-03	k: 541	n:520000
Cons ci ratio: 5.837930e-03	ci left: 4.630418e-01	ci right 4.657548e-01	k: 241487	n:520000
KS ci ratio: 2.389446e-01	ci left: 4.555351e-04	ci right 5.809083e-04	k: 268	n:520000
HCN1   520000 perm   234 sec   (2219 perm/sec)   p_kst 5.153846e-04   p_cons 4.643981e-01   p_joint 1.040385e-03

Joint ci ratio: 1.666082e-01	ci left: 9.564655e-04	ci right 1.132081e-03	k: 552	n:530000
Cons ci ratio: 5.785225e-03	ci left: 4.628283e-01	ci right 4.655155e-01	k: 246011	n:530000
KS ci ratio: 2.367544e-01	ci left: 4.558119e-04	ci right 5.799429e-04	k: 273	n:530000
HCN1   530000 perm   241 sec   (2201 perm/sec)   p_kst 5.150943e-04   p_cons 4.641717e-01   p_joint 1.041509e-03

Joint ci ratio: 1.651220e-01	ci left: 9.565030e-04	ci right 1.130403e-03	k: 562	n:540000
Cons ci ratio: 5.731466e-03	ci left: 4.628358e-01	ci right 4.654979e-01	k: 250650	n:540000
KS ci ratio: 2.350452e-01	ci left: 4.543405e-04	ci right 5.770477e-04	k: 277	n:540000
HCN1   540000 perm   247 sec   (2183 perm/sec)   p_kst 5.129630e-04   p_cons 4.641667e-01   p_joint 1.040741e-03

Joint ci ratio: 1.628237e-01	ci left: 9.670096e-04	ci right 1.140133e-03	k: 578	n:550000
Cons ci ratio: 5.677394e-03	ci left: 4.629994e-01	ci right 4.656373e-01	k: 255375	n:550000
KS ci ratio: 2.305274e-01	ci left: 4.649139e-04	ci right 5.877197e-04	k: 288	n:550000
HCN1   550000 perm   254 sec   (2164 perm/sec)   p_kst 5.236364e-04   p_cons 4.643182e-01   p_joint 1.050909e-03

Joint ci ratio: 1.608897e-01	ci left: 9.737293e-04	ci right 1.145785e-03	k: 592	n:560000
Cons ci ratio: 5.626883e-03	ci left: 4.629752e-01	ci right 4.655894e-01	k: 259998	n:560000
KS ci ratio: 2.277849e-01	ci left: 4.683944e-04	ci right 5.904409e-04	k: 295	n:560000
HCN1   560000 perm   261 sec   (2146 perm/sec)   p_kst 5.267857e-04   p_cons 4.642821e-01   p_joint 1.057143e-03

Joint ci ratio: 1.588920e-01	ci left: 9.819095e-04	ci right 1.153051e-03	k: 607	n:570000
Cons ci ratio: 5.577106e-03	ci left: 4.630046e-01	ci right 4.655958e-01	k: 264651	n:570000
KS ci ratio: 2.258852e-01	ci left: 4.684505e-04	ci right 5.893518e-04	k: 300	n:570000
HCN1   570000 perm   268 sec   (2128 perm/sec)   p_kst 5.263158e-04   p_cons 4.643000e-01   p_joint 1.064912e-03

Joint ci ratio: 1.615760e-01	ci left: 9.318779e-04	ci right 1.097309e-03	k: 587	n:580000
Cons ci ratio: 5.528761e-03	ci left: 4.630210e-01	ci right 4.655897e-01	k: 269297	n:580000
KS ci ratio: 2.243993e-01	ci left: 4.668813e-04	ci right 5.864755e-04	k: 304	n:580000
HCN1   580000 perm   275 sec   (2112 perm/sec)   p_kst 5.241379e-04   p_cons 4.643052e-01   p_joint 1.012069e-03

Joint ci ratio: 1.607584e-01	ci left: 9.258425e-04	ci right 1.089290e-03	k: 593	n:590000
Cons ci ratio: 5.484716e-03	ci left: 4.627590e-01	ci right 4.653057e-01	k: 273779	n:590000
KS ci ratio: 2.201098e-01	ci left: 4.781752e-04	ci right 5.980041e-04	k: 316	n:590000
HCN1   590000 perm   281 sec   (2096 perm/sec)   p_kst 5.355932e-04   p_cons 4.640322e-01   p_joint 1.005085e-03

Joint ci ratio: 1.618545e-01	ci left: 8.976156e-04	ci right 1.057266e-03	k: 585	n:600000
Cons ci ratio: 5.438824e-03	ci left: 4.627691e-01	ci right 4.652945e-01	k: 278419	n:600000
KS ci ratio: 2.183943e-01	ci left: 4.780814e-04	ci right 5.968276e-04	k: 321	n:600000
HCN1   600000 perm   288 sec   (2080 perm/sec)   p_kst 5.350000e-04   p_cons 4.640317e-01   p_joint 9.750000e-04

Joint ci ratio: 1.172346e-01	ci left: 1.722230e-03	ci right 1.938282e-03	k: 1115	n:610000
Cons ci ratio: 5.394136e-03	ci left: 4.627725e-01	ci right 4.652771e-01	k: 283055	n:610000
KS ci ratio: 2.163874e-01	ci left: 4.795445e-04	ci right 5.974143e-04	k: 327	n:610000
HCN1   610000 perm   296 sec   (2064 perm/sec)   p_kst 5.360656e-04   p_cons 4.640246e-01   p_joint 1.827869e-03

Joint ci ratio: 1.176065e-01	ci left: 1.683492e-03	ci right 1.895400e-03	k: 1108	n:620000
Cons ci ratio: 5.350740e-03	ci left: 4.627564e-01	ci right 4.652407e-01	k: 287679	n:620000
KS ci ratio: 2.137954e-01	ci left: 4.840183e-04	ci right 6.013757e-04	k: 335	n:620000
HCN1   620000 perm   303 sec   (2049 perm/sec)   p_kst 5.403226e-04   p_cons 4.639984e-01   p_joint 1.787097e-03

Joint ci ratio: 1.175551e-01	ci left: 1.658309e-03	ci right 1.866950e-03	k: 1109	n:630000
Cons ci ratio: 5.307562e-03	ci left: 4.628171e-01	ci right 4.652816e-01	k: 292351	n:630000
KS ci ratio: 2.119116e-01	ci left: 4.853516e-04	ci right 6.018607e-04	k: 341	n:630000
HCN1   630000 perm   310 sec   (2034 perm/sec)   p_kst 5.412698e-04   p_cons 4.640492e-01   p_joint 1.760317e-03

Joint ci ratio: 1.177161e-01	ci left: 1.627847e-03	ci right 1.832955e-03	k: 1106	n:640000
Cons ci ratio: 5.266074e-03	ci left: 4.628135e-01	ci right 4.652587e-01	k: 296983	n:640000
KS ci ratio: 2.094753e-01	ci left: 4.896086e-04	ci right 6.056151e-04	k: 349	n:640000
HCN1   640000 perm   317 sec   (2019 perm/sec)   p_kst 5.453125e-04   p_cons 4.640359e-01   p_joint 1.728125e-03

Joint ci ratio: 1.170314e-01	ci left: 1.622216e-03	ci right 1.825343e-03	k: 1119	n:650000
Cons ci ratio: 5.225447e-03	ci left: 4.628193e-01	ci right 4.652456e-01	k: 301621	n:650000
KS ci ratio: 2.079950e-01	ci left: 4.893664e-04	ci right 6.043918e-04	k: 354	n:650000
HCN1   650000 perm   324 sec   (2003 perm/sec)   p_kst 5.446154e-04   p_cons 4.640323e-01   p_joint 1.721538e-03

Joint ci ratio: 1.163070e-01	ci left: 1.618230e-03	ci right 1.819518e-03	k: 1133	n:660000
Cons ci ratio: 5.184199e-03	ci left: 4.629735e-01	ci right 4.653814e-01	k: 306357	n:660000
KS ci ratio: 2.065456e-01	ci left: 4.891343e-04	ci right 6.032027e-04	k: 359	n:660000
HCN1   660000 perm   332 sec   (1988 perm/sec)   p_kst 5.439394e-04   p_cons 4.641773e-01   p_joint 1.716667e-03

Joint ci ratio: 1.152945e-01	ci left: 1.623063e-03	ci right 1.823076e-03	k: 1153	n:670000
Cons ci ratio: 5.143772e-03	ci left: 4.631366e-01	ci right 4.655264e-01	k: 311102	n:670000
KS ci ratio: 2.029132e-01	ci left: 5.002424e-04	ci right 6.145956e-04	k: 372	n:670000
HCN1   670000 perm   339 sec   (1974 perm/sec)   p_kst 5.552239e-04   p_cons 4.643313e-01   p_joint 1.720896e-03

Joint ci ratio: 1.157996e-01	ci left: 1.584912e-03	ci right 1.781137e-03	k: 1143	n:680000
Cons ci ratio: 5.105211e-03	ci left: 4.632037e-01	ci right 4.655760e-01	k: 315785	n:680000
KS ci ratio: 2.018342e-01	ci left: 4.984702e-04	ci right 6.117375e-04	k: 376	n:680000
HCN1   680000 perm   347 sec   (1959 perm/sec)   p_kst 5.529412e-04   p_cons 4.643897e-01   p_joint 1.680882e-03

Joint ci ratio: 1.164142e-01	ci left: 1.545054e-03	ci right 1.737430e-03	k: 1131	n:690000
Cons ci ratio: 5.069484e-03	ci left: 4.630749e-01	ci right 4.654298e-01	k: 320334	n:690000
KS ci ratio: 2.010362e-01	ci left: 4.953744e-04	ci right 6.074387e-04	k: 379	n:690000
HCN1   690000 perm   355 sec   (1946 perm/sec)   p_kst 5.492754e-04   p_cons 4.642522e-01   p_joint 1.639130e-03

Joint ci ratio: 1.158024e-01	ci left: 1.539627e-03	ci right 1.730250e-03	k: 1143	n:700000
Cons ci ratio: 5.034726e-03	ci left: 4.629269e-01	ci right 4.652649e-01	k: 324867	n:700000
KS ci ratio: 2.005098e-01	ci left: 4.910110e-04	ci right 6.017617e-04	k: 381	n:700000
HCN1   700000 perm   362 sec   (1932 perm/sec)   p_kst 5.442857e-04   p_cons 4.640957e-01   p_joint 1.632857e-03

Joint ci ratio: 1.177795e-01	ci left: 1.465981e-03	ci right 1.650800e-03	k: 1105	n:710000
Cons ci ratio: 4.998253e-03	ci left: 4.630239e-01	ci right 4.653454e-01	k: 329571	n:710000
KS ci ratio: 1.971816e-01	ci left: 5.014940e-04	ci right 6.125061e-04	k: 394	n:710000
HCN1   710000 perm   370 sec   (1918 perm/sec)   p_kst 5.549296e-04   p_cons 4.641845e-01   p_joint 1.556338e-03

Joint ci ratio: 1.171985e-01	ci left: 1.460449e-03	ci right 1.643599e-03	k: 1116	n:720000
Cons ci ratio: 4.963904e-03	ci left: 4.629836e-01	ci right 4.652889e-01	k: 334178	n:720000
KS ci ratio: 1.959454e-01	ci left: 5.011315e-04	ci right 6.112849e-04	k: 399	n:720000
HCN1   720000 perm   378 sec   (1903 perm/sec)   p_kst 5.541667e-04   p_cons 4.641361e-01   p_joint 1.550000e-03

Joint ci ratio: 1.164710e-01	ci left: 1.459060e-03	ci right 1.640823e-03	k: 1130	n:730000
Cons ci ratio: 4.928490e-03	ci left: 4.631225e-01	ci right 4.654120e-01	k: 338915	n:730000
KS ci ratio: 1.937771e-01	ci left: 5.059941e-04	ci right 6.158404e-04	k: 408	n:730000
HCN1   730000 perm   386 sec   (1889 perm/sec)   p_kst 5.589041e-04   p_cons 4.642671e-01   p_joint 1.547945e-03

Joint ci ratio: 1.154041e-01	ci left: 1.466899e-03	ci right 1.647850e-03	k: 1151	n:740000
Cons ci ratio: 4.894726e-03	ci left: 4.631659e-01	ci right 4.654398e-01	k: 343584	n:740000
KS ci ratio: 1.919090e-01	ci left: 5.094453e-04	ci right 6.188502e-04	k: 416	n:740000
HCN1   740000 perm   395 sec   (1875 perm/sec)   p_kst 5.621622e-04   p_cons 4.643027e-01   p_joint 1.555405e-03

Joint ci ratio: 1.170972e-01	ci left: 1.404617e-03	ci right 1.580603e-03	k: 1118	n:750000
Cons ci ratio: 4.861347e-03	ci left: 4.632388e-01	ci right 4.654975e-01	k: 348276	n:750000
KS ci ratio: 1.907688e-01	ci left: 5.090000e-04	ci right 6.175846e-04	k: 421	n:750000
HCN1   750000 perm   403 sec   (1862 perm/sec)   p_kst 5.613333e-04   p_cons 4.643680e-01   p_joint 1.490667e-03

Joint ci ratio: 1.172559e-01	ci left: 1.382302e-03	ci right 1.555744e-03	k: 1115	n:760000
Cons ci ratio: 4.829472e-03	ci left: 4.632243e-01	ci right 4.654681e-01	k: 352903	n:760000
KS ci ratio: 1.898713e-01	ci left: 5.073150e-04	ci right 6.149721e-04	k: 425	n:760000
HCN1   760000 perm   411 sec   (1849 perm/sec)   p_kst 5.592105e-04   p_cons 4.643461e-01   p_joint 1.467105e-03

Joint ci ratio: 1.045216e-01	ci left: 1.728052e-03	ci right 1.919883e-03	k: 1403	n:770000
Cons ci ratio: 4.797539e-03	ci left: 4.632803e-01	ci right 4.655095e-01	k: 357584	n:770000
KS ci ratio: 1.887668e-01	ci left: 5.069122e-04	ci right 6.137864e-04	k: 430	n:770000
HCN1   770000 perm   419 sec   (1836 perm/sec)   p_kst 5.584416e-04   p_cons 4.643948e-01   p_joint 1.822078e-03

Joint ci ratio: 1.058142e-01	ci left: 1.663451e-03	ci right 1.850537e-03	k: 1369	n:780000
Cons ci ratio: 4.765924e-03	ci left: 4.633670e-01	ci right 4.655819e-01	k: 362290	n:780000
KS ci ratio: 1.872521e-01	ci left: 5.089654e-04	ci right 6.153136e-04	k: 437	n:780000
HCN1   780000 perm   428 sec   (1824 perm/sec)   p_kst 5.602564e-04   p_cons 4.644744e-01   p_joint 1.755128e-03

Joint ci ratio: 1.069953e-01	ci left: 1.605428e-03	ci right 1.788130e-03	k: 1339	n:790000
Cons ci ratio: 4.735986e-03	ci left: 4.633402e-01	ci right 4.655410e-01	k: 366908	n:790000
KS ci ratio: 1.851500e-01	ci left: 5.145911e-04	ci right 6.207722e-04	k: 447	n:790000
HCN1   790000 perm   436 sec   (1811 perm/sec)   p_kst 5.658228e-04   p_cons 4.644405e-01   p_joint 1.694937e-03

Joint ci ratio: 1.065592e-01	ci left: 1.598743e-03	ci right 1.779896e-03	k: 1350	n:800000
Cons ci ratio: 4.705624e-03	ci left: 4.634179e-01	ci right 4.656049e-01	k: 371609	n:800000
KS ci ratio: 1.837201e-01	ci left: 5.165048e-04	ci right 6.221660e-04	k: 454	n:800000
HCN1   800000 perm   445 sec   (1799 perm/sec)   p_kst 5.675000e-04   p_cons 4.645112e-01   p_joint 1.687500e-03

Joint ci ratio: 9.821110e-02	ci left: 1.866536e-03	ci right 2.060510e-03	k: 1589	n:810000
Cons ci ratio: 4.676918e-03	ci left: 4.633788e-01	ci right 4.655523e-01	k: 376217	n:810000
KS ci ratio: 1.829180e-01	ci left: 5.148398e-04	ci right 6.196496e-04	k: 458	n:810000
HCN1   810000 perm   454 sec   (1786 perm/sec)   p_kst 5.654321e-04   p_cons 4.644654e-01   p_joint 1.961728e-03

Joint ci ratio: 9.747791e-02	ci left: 1.872325e-03	ci right 2.065366e-03	k: 1613	n:820000
Cons ci ratio: 4.648331e-03	ci left: 4.633835e-01	ci right 4.655436e-01	k: 380860	n:820000
KS ci ratio: 1.813442e-01	ci left: 5.178727e-04	ci right 6.222932e-04	k: 466	n:820000
HCN1   820000 perm   462 sec   (1774 perm/sec)   p_kst 5.682927e-04   p_cons 4.644634e-01   p_joint 1.967073e-03

Joint ci ratio: 8.724258e-02	ci left: 2.320619e-03	ci right 2.533479e-03	k: 2013	n:830000
Cons ci ratio: 4.619939e-03	ci left: 4.634230e-01	ci right 4.655701e-01	k: 385532	n:830000
KS ci ratio: 1.796213e-01	ci left: 5.219869e-04	ci right 6.261283e-04	k: 475	n:830000
HCN1   830000 perm   471 sec   (1762 perm/sec)   p_kst 5.722892e-04   p_cons 4.644964e-01   p_joint 2.425301e-03

Joint ci ratio: 8.752747e-02	ci left: 2.277853e-03	ci right 2.487507e-03	k: 2000	n:840000
Cons ci ratio: 4.591983e-03	ci left: 4.634699e-01	ci right 4.656042e-01	k: 390211	n:840000
KS ci ratio: 1.783148e-01	ci left: 5.237328e-04	ci right 6.273806e-04	k: 482	n:840000
HCN1   840000 perm   480 sec   (1751 perm/sec)   p_kst 5.738095e-04   p_cons 4.645369e-01   p_joint 2.380952e-03

Joint ci ratio: 8.752870e-02	ci left: 2.251053e-03	ci right 2.458244e-03	k: 2000	n:850000
Cons ci ratio: 4.564496e-03	ci left: 4.635193e-01	ci right 4.656410e-01	k: 394893	n:850000
KS ci ratio: 1.773990e-01	ci left: 5.231917e-04	ci right 6.261436e-04	k: 487	n:850000
HCN1   850000 perm   489 sec   (1739 perm/sec)   p_kst 5.729412e-04   p_cons 4.645800e-01   p_joint 2.352941e-03

Joint ci ratio: 8.894449e-02	ci left: 2.153234e-03	ci right 2.354793e-03	k: 1937	n:860000
Cons ci ratio: 4.538334e-03	ci left: 4.634757e-01	ci right 4.655850e-01	k: 399496	n:860000
KS ci ratio: 1.766766e-01	ci left: 5.215531e-04	ci right 6.237200e-04	k: 491	n:860000
HCN1   860000 perm   498 sec   (1728 perm/sec)   p_kst 5.709302e-04   p_cons 4.645302e-01   p_joint 2.252326e-03

Joint ci ratio: 8.824111e-02	ci left: 2.163327e-03	ci right 2.364148e-03	k: 1968	n:870000
Cons ci ratio: 4.511784e-03	ci left: 4.635251e-01	ci right 4.656223e-01	k: 404179	n:870000
KS ci ratio: 1.761407e-01	ci left: 5.188542e-04	ci right 6.201513e-04	k: 494	n:870000
HCN1   870000 perm   507 sec   (1717 perm/sec)   p_kst 5.678161e-04   p_cons 4.645736e-01   p_joint 2.262069e-03

Joint ci ratio: 9.248106e-02	ci left: 1.943251e-03	ci right 2.132778e-03	k: 1792	n:880000
Cons ci ratio: 4.485991e-03	ci left: 4.635405e-01	ci right 4.656257e-01	k: 408833	n:880000
KS ci ratio: 1.754334e-01	ci left: 5.173036e-04	ci right 6.178494e-04	k: 498	n:880000
HCN1   880000 perm   516 sec   (1707 perm/sec)   p_kst 5.659091e-04   p_cons 4.645830e-01   p_joint 2.036364e-03

Joint ci ratio: 9.204591e-02	ci left: 1.940077e-03	ci right 2.128356e-03	k: 1809	n:890000
Cons ci ratio: 4.460293e-03	ci left: 4.635937e-01	ci right 4.656672e-01	k: 413521	n:890000
KS ci ratio: 1.742156e-01	ci left: 5.190122e-04	ci right 6.191162e-04	k: 505	n:890000
HCN1   890000 perm   525 sec   (1696 perm/sec)   p_kst 5.674157e-04   p_cons 4.646303e-01   p_joint 2.032584e-03

Joint ci ratio: 9.146646e-02	ci left: 1.943490e-03	ci right 2.130850e-03	k: 1832	n:900000
Cons ci ratio: 4.436914e-03	ci left: 4.634347e-01	ci right 4.654966e-01	k: 418019	n:900000
KS ci ratio: 1.735312e-01	ci left: 5.174964e-04	ci right 6.168749e-04	k: 509	n:900000
HCN1   900000 perm   534 sec   (1686 perm/sec)   p_kst 5.655556e-04   p_cons 4.644656e-01   p_joint 2.035556e-03

Joint ci ratio: 9.141753e-02	ci left: 1.924279e-03	ci right 2.109683e-03	k: 1834	n:910000
Cons ci ratio: 4.412766e-03	ci left: 4.634067e-01	ci right 4.654572e-01	k: 422633	n:910000
KS ci ratio: 1.728549e-01	ci left: 5.160147e-04	ci right 6.146820e-04	k: 513	n:910000
HCN1   910000 perm   543 sec   (1675 perm/sec)   p_kst 5.637363e-04   p_cons 4.644319e-01   p_joint 2.015385e-03

Joint ci ratio: 9.269259e-02	ci left: 1.850263e-03	ci right 2.031156e-03	k: 1784	n:920000
Cons ci ratio: 4.389048e-03	ci left: 4.633750e-01	ci right 4.654143e-01	k: 427243	n:920000
KS ci ratio: 1.708712e-01	ci left: 5.228884e-04	ci right 6.216045e-04	k: 525	n:920000
HCN1   920000 perm   553 sec   (1665 perm/sec)   p_kst 5.706522e-04   p_cons 4.643946e-01   p_joint 1.939130e-03

Joint ci ratio: 9.261561e-02	ci left: 1.833518e-03	ci right 2.012617e-03	k: 1787	n:930000
Cons ci ratio: 4.366245e-03	ci left: 4.632827e-01	ci right 4.653110e-01	k: 431796	n:930000
KS ci ratio: 1.705476e-01	ci left: 5.193245e-04	ci right 6.171630e-04	k: 527	n:930000
HCN1   930000 perm   562 sec   (1655 perm/sec)   p_kst 5.666667e-04   p_cons 4.642968e-01   p_joint 1.921505e-03

Joint ci ratio: 9.212742e-02	ci left: 1.833759e-03	ci right 2.011886e-03	k: 1806	n:940000
Cons ci ratio: 4.343348e-03	ci left: 4.632435e-01	ci right 4.652610e-01	k: 436397	n:940000
KS ci ratio: 1.695867e-01	ci left: 5.199111e-04	ci right 6.172518e-04	k: 533	n:940000
HCN1   940000 perm   571 sec   (1645 perm/sec)   p_kst 5.670213e-04   p_cons 4.642521e-01   p_joint 1.921277e-03

Joint ci ratio: 9.144639e-02	ci left: 1.842225e-03	ci right 2.019781e-03	k: 1833	n:950000
Cons ci ratio: 4.320113e-03	ci left: 4.632851e-01	ci right 4.652919e-01	k: 441074	n:950000
KS ci ratio: 1.681751e-01	ci left: 5.235117e-04	ci right 6.206281e-04	k: 542	n:950000
HCN1   950000 perm   581 sec   (1635 perm/sec)   p_kst 5.705263e-04   p_cons 4.642884e-01   p_joint 1.929474e-03

Joint ci ratio: 9.144731e-02	ci left: 1.823034e-03	ci right 1.998743e-03	k: 1833	n:960000
Cons ci ratio: 4.297616e-03	ci left: 4.632832e-01	ci right 4.652795e-01	k: 445710	n:960000
KS ci ratio: 1.674062e-01	ci left: 5.230481e-04	ci right 6.195901e-04	k: 547	n:960000
HCN1   960000 perm   591 sec   (1625 perm/sec)   p_kst 5.697917e-04   p_cons 4.642812e-01   p_joint 1.909375e-03

Joint ci ratio: 9.102650e-02	ci left: 1.821366e-03	ci right 1.996063e-03	k: 1850	n:970000
Cons ci ratio: 4.275422e-03	ci left: 4.632865e-01	ci right 4.652725e-01	k: 450351	n:970000
KS ci ratio: 1.664972e-01	ci left: 5.235830e-04	ci right 6.196463e-04	k: 553	n:970000
HCN1   970000 perm   601 sec   (1615 perm/sec)   p_kst 5.701031e-04   p_cons 4.642794e-01   p_joint 1.907216e-03

Joint ci ratio: 9.070881e-02	ci left: 1.815744e-03	ci right 1.989262e-03	k: 1863	n:980000
Cons ci ratio: 4.253961e-03	ci left: 4.632438e-01	ci right 4.652196e-01	k: 454947	n:980000
KS ci ratio: 1.658995e-01	ci left: 5.221521e-04	ci right 6.175747e-04	k: 557	n:980000
HCN1   980000 perm   611 sec   (1605 perm/sec)   p_kst 5.683673e-04   p_cons 4.642316e-01   p_joint 1.901020e-03

Joint ci ratio: 9.187756e-02	ci left: 1.751010e-03	ci right 1.920613e-03	k: 1816	n:990000
Cons ci ratio: 4.232098e-03	ci left: 4.632869e-01	ci right 4.652527e-01	k: 459627	n:990000
KS ci ratio: 1.644323e-01	ci left: 5.265614e-04	ci right 6.218546e-04	k: 567	n:990000
HCN1   990000 perm   621 sec   (1595 perm/sec)   p_kst 5.727273e-04   p_cons 4.642697e-01   p_joint 1.834343e-03

Joint ci ratio: 9.298727e-02	ci left: 1.691491e-03	ci right 1.857416e-03	k: 1773	n:1000000
Cons ci ratio: 4.211051e-03	ci left: 4.632721e-01	ci right 4.652281e-01	k: 464250	n:1000000
KS ci ratio: 1.638565e-01	ci left: 5.251315e-04	ci right 6.198002e-04	k: 571	n:1000000
HCN1   1000000 perm   630 sec   (1586 perm/sec)   p_kst 5.710000e-04   p_cons 4.642500e-01   p_joint 1.773000e-03

Joint ci ratio: 9.251906e-02	ci left: 1.692152e-03	ci right 1.857261e-03	k: 1791	n:1010000
Cons ci ratio: 4.189956e-03	ci left: 4.633002e-01	ci right 4.652465e-01	k: 468916	n:1010000
KS ci ratio: 1.631450e-01	ci left: 5.246801e-04	ci right 6.188165e-04	k: 576	n:1010000
HCN1   1010000 perm   640 sec   (1577 perm/sec)   p_kst 5.702970e-04   p_cons 4.642733e-01   p_joint 1.773267e-03

Joint ci ratio: 9.223671e-02	ci left: 1.686097e-03	ci right 1.850086e-03	k: 1802	n:1020000
Cons ci ratio: 4.169274e-03	ci left: 4.633161e-01	ci right 4.652528e-01	k: 473570	n:1020000
KS ci ratio: 1.627228e-01	ci left: 5.223574e-04	ci right 6.158107e-04	k: 579	n:1020000
HCN1   1020000 perm   651 sec   (1568 perm/sec)   p_kst 5.676471e-04   p_cons 4.642843e-01   p_joint 1.766667e-03

Joint ci ratio: 9.259834e-02	ci left: 1.656448e-03	ci right 1.818219e-03	k: 1788	n:1030000
Cons ci ratio: 4.149414e-03	ci left: 4.632695e-01	ci right 4.651967e-01	k: 478160	n:1030000
KS ci ratio: 1.623038e-01	ci left: 5.200801e-04	ci right 6.128630e-04	k: 582	n:1030000
HCN1   1030000 perm   661 sec   (1559 perm/sec)   p_kst 5.650485e-04   p_cons 4.642330e-01   p_joint 1.735922e-03

Joint ci ratio: 9.213596e-02	ci left: 1.657429e-03	ci right 1.818444e-03	k: 1806	n:1040000
Cons ci ratio: 4.128820e-03	ci left: 4.633459e-01	ci right 4.652639e-01	k: 482877	n:1040000
KS ci ratio: 1.614750e-01	ci left: 5.206148e-04	ci right 6.129729e-04	k: 588	n:1040000
HCN1   1040000 perm   671 sec   (1549 perm/sec)   p_kst 5.653846e-04   p_cons 4.643048e-01   p_joint 1.736538e-03

Joint ci ratio: 9.208569e-02	ci left: 1.643504e-03	ci right 1.803074e-03	k: 1808	n:1050000
Cons ci ratio: 4.109278e-03	ci left: 4.633305e-01	ci right 4.652393e-01	k: 487499	n:1050000
KS ci ratio: 1.603892e-01	ci left: 5.229688e-04	ci right 6.150606e-04	k: 596	n:1050000
HCN1   1050000 perm   682 sec   (1541 perm/sec)   p_kst 5.676190e-04   p_cons 4.642848e-01   p_joint 1.721905e-03

Joint ci ratio: 9.165604e-02	ci left: 1.643669e-03	ci right 1.802470e-03	k: 1825	n:1060000
Cons ci ratio: 4.089700e-03	ci left: 4.633530e-01	ci right 4.652528e-01	k: 492161	n:1060000
KS ci ratio: 1.594570e-01	ci left: 5.243747e-04	ci right 6.161259e-04	k: 603	n:1060000
HCN1   1060000 perm   692 sec   (1532 perm/sec)   p_kst 5.688679e-04   p_cons 4.643028e-01   p_joint 1.721698e-03

Joint ci ratio: 9.110863e-02	ci left: 1.648398e-03	ci right 1.806655e-03	k: 1847	n:1070000
Cons ci ratio: 4.070163e-03	ci left: 4.634042e-01	ci right 4.652951e-01	k: 496854	n:1070000
KS ci ratio: 1.585409e-01	ci left: 5.257558e-04	ci right 6.171698e-04	k: 610	n:1070000
HCN1   1070000 perm   702 sec   (1523 perm/sec)   p_kst 5.700935e-04   p_cons 4.643495e-01   p_joint 1.726168e-03

Joint ci ratio: 9.069245e-02	ci left: 1.648518e-03	ci right 1.806025e-03	k: 1864	n:1080000
Cons ci ratio: 4.051430e-03	ci left: 4.633896e-01	ci right 4.652717e-01	k: 501477	n:1080000
KS ci ratio: 1.581533e-01	ci left: 5.235553e-04	ci right 6.143431e-04	k: 613	n:1080000
HCN1   1080000 perm   713 sec   (1514 perm/sec)   p_kst 5.675926e-04   p_cons 4.643306e-01   p_joint 1.725926e-03

Joint ci ratio: 9.059590e-02	ci left: 1.636980e-03	ci right 1.793210e-03	k: 1868	n:1090000
Cons ci ratio: 4.033348e-03	ci left: 4.633267e-01	ci right 4.652001e-01	k: 506047	n:1090000
KS ci ratio: 1.575133e-01	ci left: 5.231580e-04	ci right 6.134752e-04	k: 618	n:1090000
HCN1   1090000 perm   724 sec   (1506 perm/sec)   p_kst 5.669725e-04   p_cons 4.642633e-01   p_joint 1.713761e-03

Joint ci ratio: 9.208930e-02	ci left: 1.568797e-03	ci right 1.721120e-03	k: 1808	n:1100000
Cons ci ratio: 4.015286e-03	ci left: 4.632922e-01	ci right 4.651571e-01	k: 510647	n:1100000
KS ci ratio: 1.570069e-01	ci left: 5.218953e-04	ci right 6.116775e-04	k: 622	n:1100000
HCN1   1100000 perm   735 sec   (1497 perm/sec)   p_kst 5.654545e-04   p_cons 4.642245e-01   p_joint 1.643636e-03

Joint ci ratio: 9.158428e-02	ci left: 1.572268e-03	ci right 1.724046e-03	k: 1828	n:1110000
Cons ci ratio: 3.996732e-03	ci left: 4.633493e-01	ci right 4.652058e-01	k: 515348	n:1110000
KS ci ratio: 1.562563e-01	ci left: 5.223871e-04	ci right 6.117840e-04	k: 628	n:1110000
HCN1   1110000 perm   745 sec   (1489 perm/sec)   p_kst 5.657658e-04   p_cons 4.642775e-01   p_joint 1.646847e-03

Joint ci ratio: 9.183676e-02	ci left: 1.549505e-03	ci right 1.699520e-03	k: 1818	n:1120000
Cons ci ratio: 3.978577e-03	ci left: 4.633876e-01	ci right 4.652358e-01	k: 520029	n:1120000
KS ci ratio: 1.557619e-01	ci left: 5.211549e-04	ci right 6.100324e-04	k: 632	n:1120000
HCN1   1120000 perm   756 sec   (1481 perm/sec)   p_kst 5.642857e-04   p_cons 4.643116e-01   p_joint 1.623214e-03

Joint ci ratio: 9.143552e-02	ci left: 1.549627e-03	ci right 1.698964e-03	k: 1834	n:1130000
Cons ci ratio: 3.960702e-03	ci left: 4.634208e-01	ci right 4.652608e-01	k: 524705	n:1130000
KS ci ratio: 1.553943e-01	ci left: 5.190944e-04	ci right 6.073921e-04	k: 635	n:1130000
HCN1   1130000 perm   767 sec   (1473 perm/sec)   p_kst 5.619469e-04   p_cons 4.643407e-01   p_joint 1.623009e-03

Joint ci ratio: 9.121240e-02	ci left: 1.543748e-03	ci right 1.692136e-03	k: 1843	n:1140000
Cons ci ratio: 3.943392e-03	ci left: 4.634122e-01	ci right 4.652441e-01	k: 529334	n:1140000
KS ci ratio: 1.550293e-01	ci left: 5.170702e-04	ci right 6.047978e-04	k: 638	n:1140000
HCN1   1140000 perm   778 sec   (1464 perm/sec)   p_kst 5.596491e-04   p_cons 4.643281e-01   p_joint 1.616667e-03

Joint ci ratio: 9.086820e-02	ci left: 1.542221e-03	ci right 1.689873e-03	k: 1857	n:1150000
Cons ci ratio: 3.926143e-03	ci left: 4.634247e-01	ci right 4.652486e-01	k: 533987	n:1150000
KS ci ratio: 1.545464e-01	ci left: 5.159175e-04	ci right 6.031516e-04	k: 642	n:1150000
HCN1   1150000 perm   790 sec   (1456 perm/sec)   p_kst 5.582609e-04   p_cons 4.643365e-01   p_joint 1.614783e-03

Joint ci ratio: 8.729449e-02	ci left: 1.659575e-03	ci right 1.811895e-03	k: 2012	n:1160000
Cons ci ratio: 3.910074e-03	ci left: 4.633154e-01	ci right 4.651314e-01	k: 538499	n:1160000
KS ci ratio: 1.537119e-01	ci left: 5.172717e-04	ci right 6.042190e-04	k: 649	n:1160000
HCN1   1160000 perm   801 sec   (1449 perm/sec)   p_kst 5.594828e-04   p_cons 4.642233e-01   p_joint 1.734483e-03

Joint ci ratio: 8.682117e-02	ci left: 1.663785e-03	ci right 1.815621e-03	k: 2034	n:1170000
Cons ci ratio: 3.893831e-03	ci left: 4.632550e-01	ci right 4.650632e-01	k: 543066	n:1170000
KS ci ratio: 1.526584e-01	ci left: 5.202481e-04	ci right 6.070416e-04	k: 658	n:1170000
HCN1   1170000 perm   812 sec   (1441 perm/sec)   p_kst 5.623932e-04   p_cons 4.641590e-01   p_joint 1.738462e-03

Joint ci ratio: 8.654534e-02	ci left: 1.660463e-03	ci right 1.811491e-03	k: 2047	n:1180000
Cons ci ratio: 3.877565e-03	ci left: 4.632244e-01	ci right 4.650249e-01	k: 547667	n:1180000
KS ci ratio: 1.523123e-01	ci left: 5.182846e-04	ci right 6.045366e-04	k: 661	n:1180000
HCN1   1180000 perm   823 sec   (1434 perm/sec)   p_kst 5.601695e-04   p_cons 4.641246e-01   p_joint 1.734746e-03

Joint ci ratio: 8.625116e-02	ci left: 1.658020e-03	ci right 1.808287e-03	k: 2061	n:1190000
Cons ci ratio: 3.861625e-03	ci left: 4.631784e-01	ci right 4.649713e-01	k: 552249	n:1190000
KS ci ratio: 1.516267e-01	ci left: 5.187795e-04	ci right 6.046900e-04	k: 667	n:1190000
HCN1   1190000 perm   834 sec   (1426 perm/sec)   p_kst 5.605042e-04   p_cons 4.640748e-01   p_joint 1.731933e-03

Joint ci ratio: 8.565055e-02	ci left: 1.667851e-03	ci right 1.817904e-03	k: 2090	n:1200000
Cons ci ratio: 3.845751e-03	ci left: 4.631499e-01	ci right 4.649353e-01	k: 556851	n:1200000
KS ci ratio: 1.505041e-01	ci left: 5.224748e-04	ci right 6.082989e-04	k: 677	n:1200000
HCN1   1200000 perm   846 sec   (1419 perm/sec)   p_kst 5.641667e-04   p_cons 4.640425e-01   p_joint 1.741667e-03

Joint ci ratio: 8.534507e-02	ci left: 1.666199e-03	ci right 1.815541e-03	k: 2105	n:1210000
Cons ci ratio: 3.829759e-03	ci left: 4.631623e-01	ci right 4.649403e-01	k: 561502	n:1210000
KS ci ratio: 1.499522e-01	ci left: 5.221337e-04	ci right 6.075591e-04	k: 682	n:1210000
HCN1   1210000 perm   857 sec   (1412 perm/sec)   p_kst 5.636364e-04   p_cons 4.640512e-01   p_joint 1.739669e-03

Joint ci ratio: 8.488262e-02	ci left: 1.670993e-03	ci right 1.819913e-03	k: 2128	n:1220000
Cons ci ratio: 3.813620e-03	ci left: 4.632196e-01	ci right 4.649904e-01	k: 566208	n:1220000
KS ci ratio: 1.490815e-01	ci left: 5.241660e-04	ci right 6.093816e-04	k: 690	n:1220000
HCN1   1220000 perm   869 sec   (1405 perm/sec)   p_kst 5.655738e-04   p_cons 4.641049e-01   p_joint 1.744262e-03

Joint ci ratio: 8.478355e-02	ci left: 1.661386e-03	ci right 1.809269e-03	k: 2133	n:1230000
Cons ci ratio: 3.797763e-03	ci left: 4.632655e-01	ci right 4.650290e-01	k: 570901	n:1230000
KS ci ratio: 1.485451e-01	ci left: 5.238182e-04	ci right 6.086436e-04	k: 695	n:1230000
HCN1   1230000 perm   880 sec   (1397 perm/sec)   p_kst 5.650407e-04   p_cons 4.641472e-01   p_joint 1.734146e-03

Joint ci ratio: 8.454636e-02	ci left: 1.657460e-03	ci right 1.804560e-03	k: 2145	n:1240000
Cons ci ratio: 3.782237e-03	ci left: 4.632929e-01	ci right 4.650492e-01	k: 575572	n:1240000
KS ci ratio: 1.480144e-01	ci left: 5.234765e-04	ci right 6.079169e-04	k: 700	n:1240000
HCN1   1240000 perm   892 sec   (1390 perm/sec)   p_kst 5.645161e-04   p_cons 4.641710e-01   p_joint 1.729839e-03

Joint ci ratio: 8.419398e-02	ci left: 1.658297e-03	ci right 1.804828e-03	k: 2163	n:1250000
Cons ci ratio: 3.766792e-03	ci left: 4.633342e-01	ci right 4.650836e-01	k: 580261	n:1250000
KS ci ratio: 1.476989e-01	ci left: 5.215998e-04	ci right 6.055424e-04	k: 703	n:1250000
HCN1   1250000 perm   904 sec   (1383 perm/sec)   p_kst 5.624000e-04   p_cons 4.642088e-01   p_joint 1.730400e-03

Joint ci ratio: 8.392305e-02	ci left: 1.656013e-03	ci right 1.801848e-03	k: 2177	n:1260000
Cons ci ratio: 3.751821e-03	ci left: 4.633368e-01	ci right 4.650792e-01	k: 584902	n:1260000
KS ci ratio: 1.473853e-01	ci left: 5.197532e-04	ci right 6.032053e-04	k: 706	n:1260000
HCN1   1260000 perm   916 sec   (1376 perm/sec)   p_kst 5.603175e-04   p_cons 4.642079e-01   p_joint 1.727778e-03

Joint ci ratio: 8.394293e-02	ci left: 1.642202e-03	ci right 1.786857e-03	k: 2176	n:1270000
Cons ci ratio: 3.737471e-03	ci left: 4.632804e-01	ci right 4.650159e-01	k: 589468	n:1270000
KS ci ratio: 1.470738e-01	ci left: 5.179358e-04	ci right 6.009049e-04	k: 709	n:1270000
HCN1   1270000 perm   928 sec   (1368 perm/sec)   p_kst 5.582677e-04   p_cons 4.641480e-01   p_joint 1.713386e-03

Joint ci ratio: 8.363619e-02	ci left: 1.641610e-03	ci right 1.785659e-03	k: 2192	n:1280000
Cons ci ratio: 3.722851e-03	ci left: 4.632826e-01	ci right 4.650113e-01	k: 594108	n:1280000
KS ci ratio: 1.464562e-01	ci left: 5.184048e-04	ci right 6.010698e-04	k: 715	n:1280000
HCN1   1280000 perm   940 sec   (1361 perm/sec)   p_kst 5.585937e-04   p_cons 4.641469e-01   p_joint 1.712500e-03

Joint ci ratio: 8.335168e-02	ci left: 1.640270e-03	ci right 1.783688e-03	k: 2207	n:1290000
Cons ci ratio: 3.708252e-03	ci left: 4.633050e-01	ci right 4.650270e-01	k: 598774	n:1290000
KS ci ratio: 1.460489e-01	ci left: 5.173734e-04	ci right 5.996245e-04	k: 719	n:1290000
HCN1   1290000 perm   952 sec   (1354 perm/sec)   p_kst 5.573643e-04   p_cons 4.641659e-01   p_joint 1.710853e-03

Joint ci ratio: 8.290212e-02	ci left: 1.645730e-03	ci right 1.788812e-03	k: 2231	n:1300000
Cons ci ratio: 3.693514e-03	ci left: 4.633686e-01	ci right 4.650839e-01	k: 603494	n:1300000
KS ci ratio: 1.451444e-01	ci left: 5.200646e-04	ci right 6.021871e-04	k: 728	n:1300000
HCN1   1300000 perm   965 sec   (1347 perm/sec)   p_kst 5.600000e-04   p_cons 4.642262e-01   p_joint 1.716154e-03

Joint ci ratio: 7.976039e-02	ci left: 1.767035e-03	ci right 1.914571e-03	k: 2410	n:1310000
Cons ci ratio: 3.679804e-03	ci left: 4.633159e-01	ci right 4.650247e-01	k: 608063	n:1310000
KS ci ratio: 1.448468e-01	ci left: 5.183016e-04	ci right 5.999634e-04	k: 731	n:1310000
HCN1   1310000 perm   977 sec   (1341 perm/sec)   p_kst 5.580153e-04   p_cons 4.641702e-01   p_joint 1.839695e-03

Joint ci ratio: 7.966171e-02	ci left: 1.758103e-03	ci right 1.904703e-03	k: 2416	n:1320000
Cons ci ratio: 3.666406e-03	ci left: 4.632421e-01	ci right 4.649444e-01	k: 612603	n:1320000
KS ci ratio: 1.438672e-01	ci left: 5.216773e-04	ci right 6.032673e-04	k: 741	n:1320000
HCN1   1320000 perm   990 sec   (1334 perm/sec)   p_kst 5.613636e-04   p_cons 4.640932e-01   p_joint 1.830303e-03

Joint ci ratio: 8.105147e-02	ci left: 1.684466e-03	ci right 1.827492e-03	k: 2334	n:1330000
Cons ci ratio: 3.652790e-03	ci left: 4.632191e-01	ci right 4.649149e-01	k: 617209	n:1330000
KS ci ratio: 1.430977e-01	ci left: 5.235540e-04	ci right 6.049622e-04	k: 749	n:1330000
HCN1   1330000 perm   1002 sec   (1327 perm/sec)   p_kst 5.631579e-04   p_cons 4.640669e-01   p_joint 1.754887e-03

Joint ci ratio: 8.068933e-02	ci left: 1.687250e-03	ci right 1.829842e-03	k: 2355	n:1340000
Cons ci ratio: 3.639368e-03	ci left: 4.631904e-01	ci right 4.648799e-01	k: 621807	n:1340000
KS ci ratio: 1.423405e-01	ci left: 5.254039e-04	ci right 6.066307e-04	k: 757	n:1340000
HCN1   1340000 perm   1015 sec   (1321 perm/sec)   p_kst 5.649254e-04   p_cons 4.640351e-01   p_joint 1.757463e-03

Joint ci ratio: 8.033201e-02	ci left: 1.689995e-03	ci right 1.832157e-03	k: 2376	n:1350000
Cons ci ratio: 3.625741e-03	ci left: 4.632103e-01	ci right 4.648936e-01	k: 626470	n:1350000
KS ci ratio: 1.418734e-01	ci left: 5.250840e-04	ci right 6.059725e-04	k: 762	n:1350000
HCN1   1350000 perm   1027 sec   (1314 perm/sec)   p_kst 5.644444e-04   p_cons 4.640519e-01   p_joint 1.760000e-03

Joint ci ratio: 8.067323e-02	ci left: 1.663157e-03	ci right 1.803684e-03	k: 2356	n:1360000
Cons ci ratio: 3.612357e-03	ci left: 4.632174e-01	ci right 4.648945e-01	k: 631116	n:1360000
KS ci ratio: 1.415030e-01	ci left: 5.240600e-04	ci right 6.045622e-04	k: 766	n:1360000
HCN1   1360000 perm   1040 sec   (1308 perm/sec)   p_kst 5.632353e-04   p_cons 4.640559e-01   p_joint 1.732353e-03

Joint ci ratio: 8.086298e-02	ci left: 1.643150e-03	ci right 1.782328e-03	k: 2345	n:1370000
Cons ci ratio: 3.599353e-03	ci left: 4.631924e-01	ci right 4.648633e-01	k: 635718	n:1370000
KS ci ratio: 1.408616e-01	ci left: 5.251638e-04	ci right 6.054392e-04	k: 773	n:1370000
HCN1   1370000 perm   1053 sec   (1301 perm/sec)   p_kst 5.642336e-04   p_cons 4.640277e-01   p_joint 1.711679e-03

Joint ci ratio: 8.060576e-02	ci left: 1.641893e-03	ci right 1.780501e-03	k: 2360	n:1380000
Cons ci ratio: 3.586426e-03	ci left: 4.631764e-01	ci right 4.648412e-01	k: 640332	n:1380000
KS ci ratio: 1.402289e-01	ci left: 5.262524e-04	ci right 6.063026e-04	k: 780	n:1380000
HCN1   1380000 perm   1066 sec   (1295 perm/sec)   p_kst 5.652174e-04   p_cons 4.640087e-01   p_joint 1.710145e-03

Joint ci ratio: 8.041882e-02	ci left: 1.637835e-03	ci right 1.775765e-03	k: 2371	n:1390000
Cons ci ratio: 3.573554e-03	ci left: 4.631721e-01	ci right 4.648309e-01	k: 644962	n:1390000
KS ci ratio: 1.399605e-01	ci left: 5.245490e-04	ci right 6.041746e-04	k: 783	n:1390000
HCN1   1390000 perm   1078 sec   (1289 perm/sec)   p_kst 5.633094e-04   p_cons 4.640014e-01   p_joint 1.705755e-03

Joint ci ratio: 8.052139e-02	ci left: 1.621936e-03	ci right 1.758710e-03	k: 2365	n:1400000
Cons ci ratio: 3.560620e-03	ci left: 4.631958e-01	ci right 4.648487e-01	k: 649631	n:1400000
KS ci ratio: 1.396049e-01	ci left: 5.235594e-04	ci right 6.028161e-04	k: 787	n:1400000
HCN1   1400000 perm   1092 sec   (1283 perm/sec)   p_kst 5.621429e-04   p_cons 4.640221e-01   p_joint 1.689286e-03

Joint ci ratio: 8.018312e-02	ci left: 1.624333e-03	ci right 1.760706e-03	k: 2385	n:1410000
Cons ci ratio: 3.548008e-03	ci left: 4.631936e-01	ci right 4.648406e-01	k: 654264	n:1410000
KS ci ratio: 1.388142e-01	ci left: 5.260070e-04	ci right 6.051459e-04	k: 796	n:1410000
HCN1   1410000 perm   1105 sec   (1276 perm/sec)   p_kst 5.645390e-04   p_cons 4.640170e-01   p_joint 1.691489e-03

Joint ci ratio: 7.991564e-02	ci left: 1.623936e-03	ci right 1.759800e-03	k: 2401	n:1420000
Cons ci ratio: 3.535093e-03	ci left: 4.632527e-01	ci right 4.648939e-01	k: 658984	n:1420000
KS ci ratio: 1.383809e-01	ci left: 5.257017e-04	ci right 6.045275e-04	k: 801	n:1420000
HCN1   1420000 perm   1118 sec   (1270 perm/sec)   p_kst 5.640845e-04   p_cons 4.640732e-01   p_joint 1.690845e-03

Joint ci ratio: 7.956846e-02	ci left: 1.626972e-03	ci right 1.762471e-03	k: 2422	n:1430000
Cons ci ratio: 3.522452e-03	ci left: 4.632921e-01	ci right 4.649276e-01	k: 663677	n:1430000
KS ci ratio: 1.376957e-01	ci left: 5.274267e-04	ci right 6.060875e-04	k: 809	n:1430000
HCN1   1430000 perm   1131 sec   (1264 perm/sec)   p_kst 5.657343e-04   p_cons 4.641098e-01   p_joint 1.693706e-03

Joint ci ratio: 7.938862e-02	ci left: 1.623161e-03	ci right 1.758023e-03	k: 2433	n:1440000
Cons ci ratio: 3.510259e-03	ci left: 4.632866e-01	ci right 4.649164e-01	k: 668306	n:1440000
KS ci ratio: 1.375262e-01	ci left: 5.251051e-04	ci right 6.033153e-04	k: 811	n:1440000
HCN1   1440000 perm   1145 sec   (1258 perm/sec)   p_kst 5.631944e-04   p_cons 4.641014e-01   p_joint 1.689583e-03

Joint ci ratio: 7.916137e-02	ci left: 1.621430e-03	ci right 1.755745e-03	k: 2447	n:1450000
Cons ci ratio: 3.497610e-03	ci left: 4.633639e-01	ci right 4.649880e-01	k: 673055	n:1450000
KS ci ratio: 1.371888e-01	ci left: 5.241474e-04	ci right 6.020078e-04	k: 815	n:1450000
HCN1   1450000 perm   1158 sec   (1252 perm/sec)   p_kst 5.620690e-04   p_cons 4.641759e-01   p_joint 1.687586e-03

Joint ci ratio: 7.917803e-02	ci left: 1.609653e-03	ci right 1.743021e-03	k: 2446	n:1460000
Cons ci ratio: 3.485395e-03	ci left: 4.633976e-01	ci right 4.650162e-01	k: 677742	n:1460000
KS ci ratio: 1.371050e-01	ci left: 5.212188e-04	ci right 5.985930e-04	k: 816	n:1460000
HCN1   1460000 perm   1171 sec   (1246 perm/sec)   p_kst 5.589041e-04   p_cons 4.642068e-01   p_joint 1.675342e-03

Joint ci ratio: 7.893651e-02	ci left: 1.608705e-03	ci right 1.741570e-03	k: 2461	n:1470000
Cons ci ratio: 3.473862e-03	ci left: 4.633514e-01	ci right 4.649644e-01	k: 682312	n:1470000
KS ci ratio: 1.367707e-01	ci left: 5.203009e-04	ci right 5.973352e-04	k: 820	n:1470000
HCN1   1470000 perm   1185 sec   (1241 perm/sec)   p_kst 5.578231e-04   p_cons 4.641578e-01   p_joint 1.674150e-03

Joint ci ratio: 7.871310e-02	ci left: 1.607108e-03	ci right 1.739449e-03	k: 2475	n:1480000
Cons ci ratio: 3.461478e-03	ci left: 4.634442e-01	ci right 4.650519e-01	k: 687087	n:1480000
KS ci ratio: 1.362736e-01	ci left: 5.207010e-04	ci right 5.974916e-04	k: 826	n:1480000
HCN1   1480000 perm   1199 sec   (1235 perm/sec)   p_kst 5.581081e-04   p_cons 4.642480e-01   p_joint 1.672297e-03

Joint ci ratio: 7.849158e-02	ci left: 1.605534e-03	ci right 1.737355e-03	k: 2489	n:1490000
Cons ci ratio: 3.449962e-03	ci left: 4.634298e-01	ci right 4.650321e-01	k: 691704	n:1490000
KS ci ratio: 1.358636e-01	ci left: 5.204478e-04	ci right 5.969514e-04	k: 831	n:1490000
HCN1   1490000 perm   1213 sec   (1229 perm/sec)   p_kst 5.577181e-04   p_cons 4.642309e-01   p_joint 1.670470e-03

Joint ci ratio: 7.817815e-02	ci left: 1.607902e-03	ci right 1.739367e-03	k: 2509	n:1500000
Cons ci ratio: 3.438343e-03	ci left: 4.634470e-01	ci right 4.650438e-01	k: 696368	n:1500000
KS ci ratio: 1.354572e-01	ci left: 5.201983e-04	ci right 5.964182e-04	k: 836	n:1500000
HCN1   1500000 perm   1226 sec   (1223 perm/sec)   p_kst 5.573333e-04   p_cons 4.642453e-01   p_joint 1.672667e-03

Joint ci ratio: 7.793018e-02	ci left: 1.607643e-03	ci right 1.738651e-03	k: 2525	n:1510000
Cons ci ratio: 3.427315e-03	ci left: 4.633950e-01	ci right 4.649866e-01	k: 700928	n:1510000
KS ci ratio: 1.351347e-01	ci left: 5.193126e-04	ci right 5.952070e-04	k: 840	n:1510000
HCN1   1510000 perm   1240 sec   (1218 perm/sec)   p_kst 5.562914e-04   p_cons 4.641907e-01   p_joint 1.672185e-03

Joint ci ratio: 8.045868e-02	ci left: 1.496463e-03	ci right 1.622553e-03	k: 2369	n:1520000
Cons ci ratio: 3.415687e-03	ci left: 4.634464e-01	ci right 4.650327e-01	k: 705644	n:1520000
KS ci ratio: 1.346552e-01	ci left: 5.197103e-04	ci right 5.953717e-04	k: 846	n:1520000
HCN1   1520000 perm   1254 sec   (1212 perm/sec)   p_kst 5.565789e-04   p_cons 4.642395e-01   p_joint 1.558553e-03

Joint ci ratio: 8.017162e-02	ci left: 1.497571e-03	ci right 1.623282e-03	k: 2386	n:1530000
Cons ci ratio: 3.404258e-03	ci left: 4.634853e-01	ci right 4.650665e-01	k: 710342	n:1530000
KS ci ratio: 1.342595e-01	ci left: 5.194715e-04	ci right 5.948582e-04	k: 851	n:1530000
HCN1   1530000 perm   1268 sec   (1207 perm/sec)   p_kst 5.562092e-04   p_cons 4.642758e-01   p_joint 1.559477e-03

Joint ci ratio: 7.990426e-02	ci left: 1.498028e-03	ci right 1.623339e-03	k: 2402	n:1540000
Cons ci ratio: 3.392863e-03	ci left: 4.635354e-01	ci right 4.651114e-01	k: 715058	n:1540000
KS ci ratio: 1.337113e-01	ci left: 5.204914e-04	ci right 5.956932e-04	k: 858	n:1540000
HCN1   1540000 perm   1282 sec   (1201 perm/sec)   p_kst 5.571429e-04   p_cons 4.643234e-01   p_joint 1.559740e-03

Joint ci ratio: 7.954082e-02	ci left: 1.502274e-03	ci right 1.627342e-03	k: 2424	n:1550000
Cons ci ratio: 3.381713e-03	ci left: 4.635656e-01	ci right 4.651365e-01	k: 719744	n:1550000
KS ci ratio: 1.330929e-01	ci left: 5.221225e-04	ci right 5.971834e-04	k: 866	n:1550000
HCN1   1550000 perm   1296 sec   (1196 perm/sec)   p_kst 5.587097e-04   p_cons 4.643510e-01   p_joint 1.563871e-03

Joint ci ratio: 7.910139e-02	ci left: 1.509609e-03	ci right 1.634561e-03	k: 2451	n:1560000
Cons ci ratio: 3.370863e-03	ci left: 4.635671e-01	ci right 4.651330e-01	k: 724386	n:1560000
KS ci ratio: 1.325588e-01	ci left: 5.231137e-04	ci right 5.979915e-04	k: 873	n:1560000
HCN1   1560000 perm   1311 sec   (1190 perm/sec)   p_kst 5.596154e-04   p_cons 4.643500e-01   p_joint 1.571154e-03

Joint ci ratio: 7.886056e-02	ci left: 1.509359e-03	ci right 1.633893e-03	k: 2466	n:1570000
Cons ci ratio: 3.359726e-03	ci left: 4.636266e-01	ci right 4.651875e-01	k: 729119	n:1570000
KS ci ratio: 1.319561e-01	ci left: 5.247087e-04	ci right 5.994466e-04	k: 881	n:1570000
HCN1   1570000 perm   1325 sec   (1185 perm/sec)   p_kst 5.611465e-04   p_cons 4.644070e-01   p_joint 1.570701e-03

Joint ci ratio: 7.860606e-02	ci left: 1.509733e-03	ci right 1.633878e-03	k: 2482	n:1580000
Cons ci ratio: 3.348698e-03	ci left: 4.636854e-01	ci right 4.652413e-01	k: 733852	n:1580000
KS ci ratio: 1.315837e-01	ci left: 5.244480e-04	ci right 5.989215e-04	k: 886	n:1580000
HCN1   1580000 perm   1339 sec   (1180 perm/sec)   p_kst 5.607595e-04   p_cons 4.644633e-01   p_joint 1.570886e-03

Joint ci ratio: 7.995623e-02	ci left: 1.449070e-03	ci right 1.570368e-03	k: 2399	n:1590000
Cons ci ratio: 3.337829e-03	ci left: 4.637359e-01	ci right 4.652869e-01	k: 738573	n:1590000
KS ci ratio: 1.314358e-01	ci left: 5.223660e-04	ci right 5.964540e-04	k: 888	n:1590000
HCN1   1590000 perm   1354 sec   (1175 perm/sec)   p_kst 5.584906e-04   p_cons 4.645113e-01   p_joint 1.508805e-03

Joint ci ratio: 7.970753e-02	ci left: 1.449201e-03	ci right 1.570115e-03	k: 2414	n:1600000
Cons ci ratio: 3.327065e-03	ci left: 4.637857e-01	ci right 4.653319e-01	k: 743294	n:1600000
KS ci ratio: 1.310677e-01	ci left: 5.221236e-04	ci right 5.959537e-04	k: 893	n:1600000
HCN1   1600000 perm   1368 sec   (1169 perm/sec)   p_kst 5.581250e-04   p_cons 4.645588e-01   p_joint 1.508750e-03

Joint ci ratio: 7.949391e-02	ci left: 1.448113e-03	ci right 1.568598e-03	k: 2427	n:1610000
Cons ci ratio: 3.316838e-03	ci left: 4.637697e-01	ci right 4.653111e-01	k: 747910	n:1610000
KS ci ratio: 1.306301e-01	ci left: 5.224853e-04	ci right 5.961007e-04	k: 899	n:1610000
HCN1   1610000 perm   1383 sec   (1164 perm/sec)   p_kst 5.583851e-04   p_cons 4.645404e-01   p_joint 1.507453e-03

Joint ci ratio: 7.926574e-02	ci left: 1.447645e-03	ci right 1.567729e-03	k: 2441	n:1620000
Cons ci ratio: 3.306452e-03	ci left: 4.637922e-01	ci right 4.653289e-01	k: 752588	n:1620000
KS ci ratio: 1.302688e-01	ci left: 5.222458e-04	ci right 5.956082e-04	k: 904	n:1620000
HCN1   1620000 perm   1397 sec   (1159 perm/sec)   p_kst 5.580247e-04   p_cons 4.645605e-01   p_joint 1.506790e-03

Joint ci ratio: 7.905565e-02	ci left: 1.446581e-03	ci right 1.566244e-03	k: 2454	n:1630000
Cons ci ratio: 3.296308e-03	ci left: 4.637924e-01	ci right 4.653243e-01	k: 757230	n:1630000
KS ci ratio: 1.296967e-01	ci left: 5.237903e-04	ci right 5.970216e-04	k: 912	n:1630000
HCN1   1630000 perm   1412 sec   (1154 perm/sec)   p_kst 5.595092e-04   p_cons 4.645583e-01   p_joint 1.505521e-03

Joint ci ratio: 7.883122e-02	ci left: 1.446128e-03	ci right 1.565399e-03	k: 2468	n:1640000
Cons ci ratio: 3.286423e-03	ci left: 4.637675e-01	ci right 4.652948e-01	k: 761831	n:1640000
KS ci ratio: 1.294136e-01	ci left: 5.229564e-04	ci right 5.958993e-04	k: 916	n:1640000
HCN1   1640000 perm   1427 sec   (1149 perm/sec)   p_kst 5.585366e-04   p_cons 4.645311e-01   p_joint 1.504878e-03

Joint ci ratio: 7.865629e-02	ci left: 1.443899e-03	ci right 1.562710e-03	k: 2479	n:1650000
Cons ci ratio: 3.276702e-03	ci left: 4.637315e-01	ci right 4.652541e-01	k: 766413	n:1650000
KS ci ratio: 1.289224e-01	ci left: 5.238923e-04	ci right 5.966672e-04	k: 923	n:1650000
HCN1   1650000 perm   1442 sec   (1144 perm/sec)   p_kst 5.593939e-04   p_cons 4.644927e-01   p_joint 1.502424e-03

Joint ci ratio: 7.841949e-02	ci left: 1.444060e-03	ci right 1.562510e-03	k: 2494	n:1660000
Cons ci ratio: 3.266975e-03	ci left: 4.637097e-01	ci right 4.652277e-01	k: 771018	n:1660000
KS ci ratio: 1.285058e-01	ci left: 5.242344e-04	ci right 5.968035e-04	k: 929	n:1660000
HCN1   1660000 perm   1457 sec   (1139 perm/sec)   p_kst 5.596386e-04   p_cons 4.644687e-01   p_joint 1.502410e-03

Joint ci ratio: 7.820043e-02	ci left: 1.443632e-03	ci right 1.561701e-03	k: 2508	n:1670000
Cons ci ratio: 3.257237e-03	ci left: 4.637032e-01	ci right 4.652167e-01	k: 775648	n:1670000
KS ci ratio: 1.281618e-01	ci left: 5.239932e-04	ci right 5.963200e-04	k: 934	n:1670000
HCN1   1670000 perm   1472 sec   (1134 perm/sec)   p_kst 5.592814e-04   p_cons 4.644599e-01   p_joint 1.501796e-03

Joint ci ratio: 7.826328e-02	ci left: 1.432704e-03	ci right 1.549978e-03	k: 2504	n:1680000
Cons ci ratio: 3.247289e-03	ci left: 4.637420e-01	ci right 4.652510e-01	k: 780354	n:1680000
KS ci ratio: 1.276169e-01	ci left: 5.254838e-04	ci right 5.976846e-04	k: 942	n:1680000
HCN1   1680000 perm   1487 sec   (1130 perm/sec)   p_kst 5.607143e-04   p_cons 4.644964e-01   p_joint 1.490476e-03

Joint ci ratio: 7.813877e-02	ci left: 1.428868e-03	ci right 1.545632e-03	k: 2512	n:1690000
Cons ci ratio: 3.237283e-03	ci left: 4.638035e-01	ci right 4.653079e-01	k: 785099	n:1690000
KS ci ratio: 1.274819e-01	ci left: 5.235200e-04	ci right 5.953692e-04	k: 944	n:1690000
HCN1   1690000 perm   1502 sec   (1125 perm/sec)   p_kst 5.585799e-04   p_cons 4.645556e-01   p_joint 1.486391e-03

Joint ci ratio: 7.798387e-02	ci left: 1.426230e-03	ci right 1.542538e-03	k: 2522	n:1700000
Cons ci ratio: 3.227394e-03	ci left: 4.638600e-01	ci right 4.653601e-01	k: 789837	n:1700000
KS ci ratio: 1.272130e-01	ci left: 5.227185e-04	ci right 5.942949e-04	k: 948	n:1700000
HCN1   1700000 perm   1517 sec   (1120 perm/sec)   p_kst 5.576471e-04   p_cons 4.646100e-01   p_joint 1.483529e-03

Joint ci ratio: 7.795328e-02	ci left: 1.419036e-03	ci right 1.534710e-03	k: 2524	n:1710000
Cons ci ratio: 3.217918e-03	ci left: 4.638663e-01	ci right 4.653619e-01	k: 794490	n:1710000
KS ci ratio: 1.270125e-01	ci left: 5.213602e-04	ci right 5.926297e-04	k: 951	n:1710000
HCN1   1710000 perm   1533 sec   (1116 perm/sec)   p_kst 5.561404e-04   p_cons 4.646140e-01   p_joint 1.476023e-03

Joint ci ratio: 7.769213e-02	ci left: 1.420477e-03	ci right 1.535863e-03	k: 2541	n:1720000
Cons ci ratio: 3.208389e-03	ci left: 4.638934e-01	ci right 4.653847e-01	k: 799179	n:1720000
KS ci ratio: 1.266803e-01	ci left: 5.211438e-04	ci right 5.921833e-04	k: 956	n:1720000
HCN1   1720000 perm   1548 sec   (1111 perm/sec)   p_kst 5.558140e-04   p_cons 4.646390e-01   p_joint 1.477326e-03

Joint ci ratio: 7.744874e-02	ci left: 1.421336e-03	ci right 1.536413e-03	k: 2557	n:1730000
Cons ci ratio: 3.199305e-03	ci left: 4.638641e-01	ci right 4.653511e-01	k: 803771	n:1730000
KS ci ratio: 1.260234e-01	ci left: 5.237291e-04	ci right 5.947232e-04	k: 966	n:1730000
HCN1   1730000 perm   1563 sec   (1107 perm/sec)   p_kst 5.583815e-04   p_cons 4.646075e-01   p_joint 1.478035e-03

Joint ci ratio: 7.710270e-02	ci left: 1.426130e-03	ci right 1.541057e-03	k: 2580	n:1740000
Cons ci ratio: 3.189933e-03	ci left: 4.638920e-01	ci right 4.653747e-01	k: 808462	n:1740000
KS ci ratio: 1.255697e-01	ci left: 5.246156e-04	ci right 5.954547e-04	k: 973	n:1740000
HCN1   1740000 perm   1579 sec   (1102 perm/sec)   p_kst 5.591954e-04   p_cons 4.646333e-01   p_joint 1.482759e-03

Joint ci ratio: 7.692415e-02	ci left: 1.424706e-03	ci right 1.539240e-03	k: 2592	n:1750000
Cons ci ratio: 3.180631e-03	ci left: 4.639214e-01	ci right 4.653999e-01	k: 813156	n:1750000
KS ci ratio: 1.254411e-01	ci left: 5.227247e-04	ci right 5.932309e-04	k: 975	n:1750000
HCN1   1750000 perm   1594 sec   (1098 perm/sec)   p_kst 5.571429e-04   p_cons 4.646606e-01   p_joint 1.481143e-03

Joint ci ratio: 7.211252e-02	ci left: 1.615682e-03	ci right 1.737104e-03	k: 2949	n:1760000
Cons ci ratio: 3.171599e-03	ci left: 4.639209e-01	ci right 4.653951e-01	k: 817798	n:1760000
KS ci ratio: 1.248666e-01	ci left: 5.247082e-04	ci right 5.951339e-04	k: 984	n:1760000
HCN1   1760000 perm   1610 sec   (1093 perm/sec)   p_kst 5.590909e-04   p_cons 4.646580e-01   p_joint 1.675568e-03

Joint ci ratio: 7.183291e-02	ci left: 1.619314e-03	ci right 1.740518e-03	k: 2972	n:1770000
Cons ci ratio: 3.162637e-03	ci left: 4.639215e-01	ci right 4.653916e-01	k: 822442	n:1770000
KS ci ratio: 1.242374e-01	ci left: 5.272175e-04	ci right 5.975971e-04	k: 994	n:1770000
HCN1   1770000 perm   1626 sec   (1089 perm/sec)   p_kst 5.615819e-04   p_cons 4.646565e-01   p_joint 1.679096e-03

Joint ci ratio: 7.158046e-02	ci left: 1.621803e-03	ci right 1.742749e-03	k: 2993	n:1780000
Cons ci ratio: 3.153892e-03	ci left: 4.638997e-01	ci right 4.653656e-01	k: 827046	n:1780000
KS ci ratio: 1.235561e-01	ci left: 5.302439e-04	ci right 6.006110e-04	k: 1005	n:1780000
HCN1   1780000 perm   1642 sec   (1084 perm/sec)   p_kst 5.646067e-04   p_cons 4.646326e-01   p_joint 1.681461e-03

Joint ci ratio: 7.418243e-02	ci left: 1.499752e-03	ci right 1.615837e-03	k: 2787	n:1790000
Cons ci ratio: 3.144930e-03	ci left: 4.639239e-01	ci right 4.653857e-01	k: 831732	n:1790000
KS ci ratio: 1.233112e-01	ci left: 5.294473e-04	ci right 5.995592e-04	k: 1009	n:1790000
HCN1   1790000 perm   1658 sec   (1080 perm/sec)   p_kst 5.636872e-04   p_cons 4.646547e-01   p_joint 1.556983e-03

Joint ci ratio: 7.398369e-02	ci left: 1.499599e-03	ci right 1.615348e-03	k: 2802	n:1800000
Cons ci ratio: 3.136191e-03	ci left: 4.639245e-01	ci right 4.653823e-01	k: 836376	n:1800000
KS ci ratio: 1.229466e-01	ci left: 5.297366e-04	ci right 5.996643e-04	k: 1015	n:1800000
HCN1   1800000 perm   1674 sec   (1075 perm/sec)   p_kst 5.638889e-04   p_cons 4.646533e-01   p_joint 1.556667e-03

Joint ci ratio: 7.484471e-02	ci left: 1.456612e-03	ci right 1.570407e-03	k: 2738	n:1810000
Cons ci ratio: 3.127423e-03	ci left: 4.639411e-01	ci right 4.653949e-01	k: 841049	n:1810000
KS ci ratio: 1.224653e-01	ci left: 5.310941e-04	ci right 6.009067e-04	k: 1023	n:1810000
HCN1   1810000 perm   1690 sec   (1071 perm/sec)   p_kst 5.651934e-04   p_cons 4.646680e-01   p_joint 1.512707e-03

Joint ci ratio: 7.461348e-02	ci left: 1.457774e-03	ci right 1.571294e-03	k: 2755	n:1820000
Cons ci ratio: 3.119022e-03	ci left: 4.639109e-01	ci right 4.653606e-01	k: 845637	n:1820000
KS ci ratio: 1.220488e-01	ci left: 5.319046e-04	ci right 6.015687e-04	k: 1030	n:1820000
HCN1   1820000 perm   1706 sec   (1067 perm/sec)   p_kst 5.659341e-04   p_cons 4.646357e-01   p_joint 1.513736e-03

Joint ci ratio: 7.437095e-02	ci left: 1.459461e-03	ci right 1.572727e-03	k: 2773	n:1830000
Cons ci ratio: 3.110650e-03	ci left: 4.638870e-01	ci right 4.653328e-01	k: 850236	n:1830000
KS ci ratio: 1.215195e-01	ci left: 5.337662e-04	ci right 6.033492e-04	k: 1039	n:1830000
HCN1   1830000 perm   1722 sec   (1062 perm/sec)   p_kst 5.677596e-04   p_cons 4.646098e-01   p_joint 1.515301e-03

Joint ci ratio: 7.417069e-02	ci left: 1.459530e-03	ci right 1.572483e-03	k: 2788	n:1840000
Cons ci ratio: 3.101938e-03	ci left: 4.639286e-01	ci right 4.653704e-01	k: 854955	n:1840000
KS ci ratio: 1.211125e-01	ci left: 5.345543e-04	ci right 6.039899e-04	k: 1046	n:1840000
HCN1   1840000 perm   1739 sec   (1058 perm/sec)   p_kst 5.684783e-04   p_cons 4.646495e-01   p_joint 1.515217e-03

Joint ci ratio: 7.401170e-02	ci left: 1.458007e-03	ci right 1.570590e-03	k: 2800	n:1850000
Cons ci ratio: 3.093663e-03	ci left: 4.639114e-01	ci right 4.653493e-01	k: 859566	n:1850000
KS ci ratio: 1.209395e-01	ci left: 5.332373e-04	ci right 6.023958e-04	k: 1049	n:1850000
HCN1   1850000 perm   1755 sec   (1054 perm/sec)   p_kst 5.670270e-04   p_cons 4.646303e-01   p_joint 1.513514e-03

Joint ci ratio: 7.411808e-02	ci left: 1.445947e-03	ci right 1.557765e-03	k: 2792	n:1860000
Cons ci ratio: 3.085163e-03	ci left: 4.639411e-01	ci right 4.653751e-01	k: 864264	n:1860000
KS ci ratio: 1.207671e-01	ci left: 5.319345e-04	ci right 6.008187e-04	k: 1052	n:1860000
HCN1   1860000 perm   1772 sec   (1050 perm/sec)   p_kst 5.655914e-04   p_cons 4.646581e-01   p_joint 1.501075e-03

Joint ci ratio: 7.398585e-02	ci left: 1.443463e-03	ci right 1.554882e-03	k: 2802	n:1870000
Cons ci ratio: 3.076782e-03	ci left: 4.639625e-01	ci right 4.653927e-01	k: 868947	n:1870000
KS ci ratio: 1.204815e-01	ci left: 5.316831e-04	ci right 6.003602e-04	k: 1057	n:1870000
HCN1   1870000 perm   1788 sec   (1046 perm/sec)   p_kst 5.652406e-04   p_cons 4.646775e-01   p_joint 1.498396e-03

Joint ci ratio: 7.380179e-02	ci left: 1.443094e-03	ci right 1.554195e-03	k: 2816	n:1880000
Cons ci ratio: 3.068440e-03	ci left: 4.639884e-01	ci right 4.654149e-01	k: 873639	n:1880000
KS ci ratio: 1.201978e-01	ci left: 5.314345e-04	ci right 5.999064e-04	k: 1062	n:1880000
HCN1   1880000 perm   1805 sec   (1041 perm/sec)   p_kst 5.648936e-04   p_cons 4.647016e-01   p_joint 1.497872e-03

Joint ci ratio: 7.242470e-02	ci left: 1.491558e-03	ci right 1.604158e-03	k: 2924	n:1890000
Cons ci ratio: 3.060172e-03	ci left: 4.640131e-01	ci right 4.654357e-01	k: 878329	n:1890000
KS ci ratio: 1.196921e-01	ci left: 5.332417e-04	ci right 6.016370e-04	k: 1071	n:1890000
HCN1   1890000 perm   1822 sec   (1037 perm/sec)   p_kst 5.666667e-04   p_cons 4.647243e-01   p_joint 1.547090e-03

Joint ci ratio: 7.240021e-02	ci left: 1.484741e-03	ci right 1.596787e-03	k: 2926	n:1900000
Cons ci ratio: 3.051967e-03	ci left: 4.640380e-01	ci right 4.654569e-01	k: 883020	n:1900000
KS ci ratio: 1.190825e-01	ci left: 5.360518e-04	ci right 6.044327e-04	k: 1082	n:1900000
HCN1   1900000 perm   1839 sec   (1033 perm/sec)   p_kst 5.694737e-04   p_cons 4.647474e-01   p_joint 1.540000e-03

Joint ci ratio: 7.216629e-02	ci left: 1.486736e-03	ci right 1.598554e-03	k: 2945	n:1910000
Cons ci ratio: 3.043776e-03	ci left: 4.640710e-01	ci right 4.654862e-01	k: 887727	n:1910000
KS ci ratio: 1.186995e-01	ci left: 5.368012e-04	ci right 6.050420e-04	k: 1089	n:1910000
HCN1   1910000 perm   1856 sec   (1029 perm/sec)   p_kst 5.701571e-04   p_cons 4.647785e-01   p_joint 1.541885e-03

Joint ci ratio: 7.197111e-02	ci left: 1.487175e-03	ci right 1.598712e-03	k: 2961	n:1920000
Cons ci ratio: 3.035689e-03	ci left: 4.640974e-01	ci right 4.655089e-01	k: 892422	n:1920000
KS ci ratio: 1.182662e-01	ci left: 5.380486e-04	ci right 6.061808e-04	k: 1097	n:1920000
HCN1   1920000 perm   1873 sec   (1025 perm/sec)   p_kst 5.713542e-04   p_cons 4.648031e-01   p_joint 1.542187e-03

Joint ci ratio: 7.176543e-02	ci left: 1.488120e-03	ci right 1.599395e-03	k: 2978	n:1930000
Cons ci ratio: 3.028014e-03	ci left: 4.640666e-01	ci right 4.654744e-01	k: 897007	n:1930000
KS ci ratio: 1.179978e-01	ci left: 5.377749e-04	ci right 6.057072e-04	k: 1102	n:1930000
HCN1   1930000 perm   1890 sec   (1021 perm/sec)   p_kst 5.709845e-04   p_cons 4.647705e-01   p_joint 1.543005e-03

Joint ci ratio: 7.169344e-02	ci left: 1.483486e-03	ci right 1.594299e-03	k: 2984	n:1940000
Cons ci ratio: 3.020427e-03	ci left: 4.640310e-01	ci right 4.654351e-01	k: 901582	n:1940000
KS ci ratio: 1.178378e-01	ci left: 5.365036e-04	ci right 6.041770e-04	k: 1105	n:1940000
HCN1   1940000 perm   1907 sec   (1017 perm/sec)   p_kst 5.695876e-04   p_cons 4.647330e-01   p_joint 1.538144e-03

Joint ci ratio: 7.174188e-02	ci left: 1.473864e-03	ci right 1.584035e-03	k: 2980	n:1950000
Cons ci ratio: 3.012661e-03	ci left: 4.640346e-01	ci right 4.654352e-01	k: 906233	n:1950000
KS ci ratio: 1.176253e-01	ci left: 5.357432e-04	ci right 6.031903e-04	k: 1109	n:1950000
HCN1   1950000 perm   1924 sec   (1013 perm/sec)   p_kst 5.687179e-04   p_cons 4.647349e-01   p_joint 1.528205e-03

Joint ci ratio: 7.157403e-02	ci left: 1.473359e-03	ci right 1.583224e-03	k: 2994	n:1960000
Cons ci ratio: 3.004985e-03	ci left: 4.640332e-01	ci right 4.654302e-01	k: 910874	n:1960000
KS ci ratio: 1.175196e-01	ci left: 5.340002e-04	ci right 6.011632e-04	k: 1111	n:1960000
HCN1   1960000 perm   1942 sec   (1009 perm/sec)   p_kst 5.668367e-04   p_cons 4.647316e-01   p_joint 1.527551e-03

Joint ci ratio: 7.134801e-02	ci left: 1.475352e-03	ci right 1.585005e-03	k: 3013	n:1970000
Cons ci ratio: 2.997365e-03	ci left: 4.640323e-01	ci right 4.654257e-01	k: 915516	n:1970000
KS ci ratio: 1.171514e-01	ci left: 5.347385e-04	ci right 6.017692e-04	k: 1118	n:1970000
HCN1   1970000 perm   1959 sec   (1006 perm/sec)   p_kst 5.675127e-04   p_cons 4.647289e-01   p_joint 1.529442e-03

Joint ci ratio: 7.121824e-02	ci left: 1.473358e-03	ci right 1.582654e-03	k: 3024	n:1980000
Cons ci ratio: 2.989666e-03	ci left: 4.640541e-01	ci right 4.654440e-01	k: 920203	n:1980000
KS ci ratio: 1.169426e-01	ci left: 5.339989e-04	ci right 6.008093e-04	k: 1122	n:1980000
HCN1   1980000 perm   1977 sec   (1002 perm/sec)   p_kst 5.666667e-04   p_cons 4.647490e-01   p_joint 1.527273e-03

Joint ci ratio: 7.130119e-02	ci left: 1.462499e-03	ci right 1.571121e-03	k: 3017	n:1990000
Cons ci ratio: 2.981887e-03	ci left: 4.640988e-01	ci right 4.654852e-01	k: 924936	n:1990000
KS ci ratio: 1.168388e-01	ci left: 5.322911e-04	ci right 5.988246e-04	k: 1124	n:1990000
HCN1   1990000 perm   1994 sec   (998 perm/sec)   p_kst 5.648241e-04   p_cons 4.647920e-01   p_joint 1.516080e-03

Joint ci ratio: 7.111292e-02	ci left: 1.463044e-03	ci right 1.571408e-03	k: 3033	n:2000000
Cons ci ratio: 2.974312e-03	ci left: 4.641191e-01	ci right 4.655020e-01	k: 929621	n:2000000
KS ci ratio: 1.165800e-01	ci left: 5.320566e-04	ci right 5.984034e-04	k: 1129	n:2000000
HCN1   2000000 perm   2012 sec   (994 perm/sec)   p_kst 5.645000e-04   p_cons 4.648105e-01   p_joint 1.516500e-03

Joint ci ratio: 7.099611e-02	ci left: 1.460652e-03	ci right 1.568654e-03	k: 3043	n:2010000
Cons ci ratio: 2.966747e-03	ci left: 4.641471e-01	ci right 4.655266e-01	k: 934322	n:2010000
KS ci ratio: 1.163742e-01	ci left: 5.313416e-04	ci right 5.974743e-04	k: 1133	n:2010000
HCN1   2010000 perm   2029 sec   (991 perm/sec)   p_kst 5.636816e-04   p_cons 4.648368e-01   p_joint 1.513930e-03

Joint ci ratio: 7.079865e-02	ci left: 1.461687e-03	ci right 1.569453e-03	k: 3060	n:2020000
Cons ci ratio: 2.959366e-03	ci left: 4.641536e-01	ci right 4.655297e-01	k: 938980	n:2020000
KS ci ratio: 1.160676e-01	ci left: 5.315952e-04	ci right 5.975731e-04	k: 1139	n:2020000
HCN1   2020000 perm   2047 sec   (987 perm/sec)   p_kst 5.638614e-04   p_cons 4.648416e-01   p_joint 1.514851e-03

Joint ci ratio: 7.076420e-02	ci left: 1.455938e-03	ci right 1.563226e-03	k: 3063	n:2030000
Cons ci ratio: 2.952221e-03	ci left: 4.641295e-01	ci right 4.655022e-01	k: 943576	n:2030000
KS ci ratio: 1.159660e-01	ci left: 5.299331e-04	ci right 5.956432e-04	k: 1141	n:2030000
HCN1   2030000 perm   2065 sec   (983 perm/sec)   p_kst 5.620690e-04   p_cons 4.648158e-01   p_joint 1.508867e-03

Joint ci ratio: 7.061459e-02	ci left: 1.455061e-03	ci right 1.562048e-03	k: 3076	n:2040000
Cons ci ratio: 2.945024e-03	ci left: 4.641232e-01	ci right 4.654926e-01	k: 948208	n:2040000
KS ci ratio: 1.157635e-01	ci left: 5.292393e-04	ci right 5.947410e-04	k: 1145	n:2040000
HCN1   2040000 perm   2083 sec   (979 perm/sec)   p_kst 5.612745e-04   p_cons 4.648078e-01   p_joint 1.507843e-03

Joint ci ratio: 7.036337e-02	ci left: 1.458506e-03	ci right 1.565349e-03	k: 3098	n:2050000
Cons ci ratio: 2.937726e-03	ci left: 4.641429e-01	ci right 4.655089e-01	k: 952893	n:2050000
KS ci ratio: 1.153115e-01	ci left: 5.309211e-04	ci right 5.963568e-04	k: 1154	n:2050000
HCN1   2050000 perm   2101 sec   (976 perm/sec)   p_kst 5.629268e-04   p_cons 4.648259e-01   p_joint 1.511220e-03

Joint ci ratio: 7.022759e-02	ci left: 1.457149e-03	ci right 1.563678e-03	k: 3110	n:2060000
Cons ci ratio: 2.930487e-03	ci left: 4.641614e-01	ci right 4.655241e-01	k: 957576	n:2060000
KS ci ratio: 1.151124e-01	ci left: 5.302296e-04	ci right 5.954596e-04	k: 1158	n:2060000
HCN1   2060000 perm   2119 sec   (972 perm/sec)   p_kst 5.621359e-04   p_cons 4.648427e-01   p_joint 1.509709e-03

Joint ci ratio: 7.013759e-02	ci left: 1.453906e-03	ci right 1.560057e-03	k: 3118	n:2070000
Cons ci ratio: 2.923208e-03	ci left: 4.641957e-01	ci right 4.655551e-01	k: 962292	n:2070000
KS ci ratio: 1.149638e-01	ci left: 5.290756e-04	ci right 5.940740e-04	k: 1161	n:2070000
HCN1   2070000 perm   2137 sec   (968 perm/sec)   p_kst 5.608696e-04   p_cons 4.648754e-01   p_joint 1.506280e-03

Joint ci ratio: 6.992487e-02	ci left: 1.455891e-03	ci right 1.561851e-03	k: 3137	n:2080000
Cons ci ratio: 2.916059e-03	ci left: 4.642167e-01	ci right 4.655728e-01	k: 966981	n:2080000
KS ci ratio: 1.145210e-01	ci left: 5.307348e-04	ci right 5.956689e-04	k: 1170	n:2080000
HCN1   2080000 perm   2156 sec   (965 perm/sec)   p_kst 5.625000e-04   p_cons 4.648947e-01   p_joint 1.508173e-03

Joint ci ratio: 6.926506e-02	ci left: 1.477134e-03	ci right 1.583585e-03	k: 3197	n:2090000
Cons ci ratio: 2.909329e-03	ci left: 4.641748e-01	ci right 4.655277e-01	k: 971539	n:2090000
KS ci ratio: 1.143260e-01	ci left: 5.300545e-04	ci right 5.947874e-04	k: 1174	n:2090000
HCN1   2090000 perm   2174 sec   (961 perm/sec)   p_kst 5.617225e-04   p_cons 4.648512e-01   p_joint 1.529665e-03

Joint ci ratio: 6.963704e-02	ci left: 1.454190e-03	ci right 1.559573e-03	k: 3163	n:2100000
Cons ci ratio: 2.902396e-03	ci left: 4.641762e-01	ci right 4.655258e-01	k: 976187	n:2100000
KS ci ratio: 1.139869e-01	ci left: 5.307686e-04	ci right 5.953836e-04	k: 1181	n:2100000
HCN1   2100000 perm   2192 sec   (958 perm/sec)   p_kst 5.623810e-04   p_cons 4.648510e-01   p_joint 1.506190e-03

Joint ci ratio: 6.952734e-02	ci left: 1.451955e-03	ci right 1.557004e-03	k: 3173	n:2110000
Cons ci ratio: 2.895544e-03	ci left: 4.641719e-01	ci right 4.655183e-01	k: 980823	n:2110000
KS ci ratio: 1.138426e-01	ci left: 5.296343e-04	ci right 5.940241e-04	k: 1184	n:2110000
HCN1   2110000 perm   2210 sec   (955 perm/sec)   p_kst 5.611374e-04   p_cons 4.648450e-01   p_joint 1.503791e-03

Joint ci ratio: 6.932010e-02	ci left: 1.453913e-03	ci right 1.558777e-03	k: 3192	n:2120000
Cons ci ratio: 2.888741e-03	ci left: 4.641676e-01	ci right 4.655108e-01	k: 985459	n:2120000
KS ci ratio: 1.133652e-01	ci left: 5.317190e-04	ci right 5.960731e-04	k: 1194	n:2120000
HCN1   2120000 perm   2231 sec   (950 perm/sec)   p_kst 5.632075e-04   p_cons 4.648392e-01   p_joint 1.505660e-03

Joint ci ratio: 6.900721e-02	ci left: 1.460467e-03	ci right 1.565309e-03	k: 3221	n:2130000
Cons ci ratio: 2.882016e-03	ci left: 4.641582e-01	ci right 4.654983e-01	k: 990084	n:2130000
KS ci ratio: 1.129875e-01	ci left: 5.328723e-04	ci right 5.971367e-04	k: 1202	n:2130000
HCN1   2130000 perm   2250 sec   (947 perm/sec)   p_kst 5.643192e-04   p_cons 4.648282e-01   p_joint 1.512207e-03

Joint ci ratio: 6.934235e-02	ci left: 1.439406e-03	ci right 1.543259e-03	k: 3190	n:2140000
Cons ci ratio: 2.875345e-03	ci left: 4.641475e-01	ci right 4.654844e-01	k: 994706	n:2140000
KS ci ratio: 1.128938e-01	ci left: 5.312904e-04	ci right 5.953074e-04	k: 1204	n:2140000
HCN1   2140000 perm   2268 sec   (944 perm/sec)   p_kst 5.626168e-04   p_cons 4.648159e-01   p_joint 1.490654e-03

Joint ci ratio: 6.915834e-02	ci left: 1.440482e-03	ci right 1.544124e-03	k: 3207	n:2150000
Cons ci ratio: 2.868745e-03	ci left: 4.641327e-01	ci right 4.654665e-01	k: 999319	n:2150000
KS ci ratio: 1.125209e-01	ci left: 5.324353e-04	ci right 5.963643e-04	k: 1212	n:2150000
HCN1   2150000 perm   2286 sec   (940 perm/sec)   p_kst 5.637209e-04   p_cons 4.647995e-01   p_joint 1.491628e-03

Joint ci ratio: 6.900794e-02	ci left: 1.440182e-03	ci right 1.543569e-03	k: 3221	n:2160000
Cons ci ratio: 2.862142e-03	ci left: 4.641263e-01	ci right 4.654571e-01	k: 1003950	n:2160000
KS ci ratio: 1.123358e-01	ci left: 5.317701e-04	ci right 5.955072e-04	k: 1216	n:2160000
HCN1   2160000 perm   2305 sec   (937 perm/sec)   p_kst 5.629630e-04   p_cons 4.647917e-01   p_joint 1.491204e-03

Joint ci ratio: 6.890118e-02	ci left: 1.438074e-03	ci right 1.541144e-03	k: 3231	n:2170000
Cons ci ratio: 2.855534e-03	ci left: 4.641288e-01	ci right 4.654565e-01	k: 1008600	n:2170000
KS ci ratio: 1.121058e-01	ci left: 5.315590e-04	ci right 5.951318e-04	k: 1221	n:2170000
HCN1   2170000 perm   2324 sec   (934 perm/sec)   p_kst 5.626728e-04   p_cons 4.647926e-01   p_joint 1.488940e-03

Joint ci ratio: 6.874184e-02	ci left: 1.438240e-03	ci right 1.541073e-03	k: 3246	n:2180000
Cons ci ratio: 2.849111e-03	ci left: 4.641070e-01	ci right 4.654316e-01	k: 1013197	n:2180000
KS ci ratio: 1.118772e-01	ci left: 5.313500e-04	ci right 5.947596e-04	k: 1226	n:2180000
HCN1   2180000 perm   2342 sec   (931 perm/sec)   p_kst 5.623853e-04   p_cons 4.647693e-01   p_joint 1.488991e-03

Joint ci ratio: 6.867855e-02	ci left: 1.434365e-03	ci right 1.536823e-03	k: 3252	n:2190000
Cons ci ratio: 2.842631e-03	ci left: 4.641027e-01	ci right 4.654243e-01	k: 1017832	n:2190000
KS ci ratio: 1.115594e-01	ci left: 5.320308e-04	ci right 5.953294e-04	k: 1233	n:2190000
HCN1   2190000 perm   2361 sec   (928 perm/sec)   p_kst 5.630137e-04   p_cons 4.647635e-01   p_joint 1.484932e-03

Joint ci ratio: 6.848928e-02	ci left: 1.435887e-03	ci right 1.538160e-03	k: 3270	n:2200000
Cons ci ratio: 2.835971e-03	ci left: 4.641380e-01	ci right 4.654566e-01	k: 1022554	n:2200000
KS ci ratio: 1.111547e-01	ci left: 5.335895e-04	ci right 5.968281e-04	k: 1242	n:2200000
HCN1   2200000 perm   2380 sec   (924 perm/sec)   p_kst 5.645455e-04   p_cons 4.647973e-01   p_joint 1.486364e-03

Joint ci ratio: 6.832237e-02	ci left: 1.436506e-03	ci right 1.538564e-03	k: 3286	n:2210000
Cons ci ratio: 2.829486e-03	ci left: 4.641504e-01	ci right 4.654660e-01	k: 1027226	n:2210000
KS ci ratio: 1.107986e-01	ci left: 5.346945e-04	ci right 5.978479e-04	k: 1250	n:2210000
HCN1   2210000 perm   2399 sec   (921 perm/sec)   p_kst 5.656109e-04   p_cons 4.648081e-01   p_joint 1.486878e-03

Joint ci ratio: 6.816700e-02	ci left: 1.436676e-03	ci right 1.538505e-03	k: 3301	n:2220000
Cons ci ratio: 2.823167e-03	ci left: 4.641410e-01	ci right 4.654537e-01	k: 1031850	n:2220000
KS ci ratio: 1.106220e-01	ci left: 5.340378e-04	ci right 5.970066e-04	k: 1254	n:2220000
HCN1   2220000 perm   2418 sec   (918 perm/sec)   p_kst 5.648649e-04   p_cons 4.647973e-01   p_joint 1.486937e-03

Joint ci ratio: 6.818792e-02	ci left: 1.429352e-03	ci right 1.530694e-03	k: 3299	n:2230000
Cons ci ratio: 2.817005e-03	ci left: 4.641116e-01	ci right 4.654213e-01	k: 1036429	n:2230000
KS ci ratio: 1.104461e-01	ci left: 5.333872e-04	ci right 5.961727e-04	k: 1258	n:2230000
HCN1   2230000 perm   2437 sec   (915 perm/sec)   p_kst 5.641256e-04   p_cons 4.647664e-01   p_joint 1.479372e-03

Joint ci ratio: 6.808491e-02	ci left: 1.427359e-03	ci right 1.528401e-03	k: 3309	n:2240000
Cons ci ratio: 2.810601e-03	ci left: 4.641324e-01	ci right 4.654391e-01	k: 1041120	n:2240000
KS ci ratio: 1.103148e-01	ci left: 5.323083e-04	ci right 5.948875e-04	k: 1261	n:2240000
HCN1   2240000 perm   2456 sec   (912 perm/sec)   p_kst 5.629464e-04   p_cons 4.647857e-01   p_joint 1.477232e-03

Joint ci ratio: 6.795163e-02	ci left: 1.426695e-03	ci right 1.527484e-03	k: 3322	n:2250000
Cons ci ratio: 2.804303e-03	ci left: 4.641419e-01	ci right 4.654457e-01	k: 1045786	n:2250000
KS ci ratio: 1.100535e-01	ci left: 5.325356e-04	ci right 5.949837e-04	k: 1267	n:2250000
HCN1   2250000 perm   2476 sec   (909 perm/sec)   p_kst 5.631111e-04   p_cons 4.647938e-01   p_joint 1.476444e-03

Joint ci ratio: 6.776828e-02	ci left: 1.428211e-03	ci right 1.528825e-03	k: 3340	n:2260000
Cons ci ratio: 2.798084e-03	ci left: 4.641447e-01	ci right 4.654457e-01	k: 1050437	n:2260000
KS ci ratio: 1.097941e-01	ci left: 5.327612e-04	ci right 5.950788e-04	k: 1273	n:2260000
HCN1   2260000 perm   2495 sec   (906 perm/sec)   p_kst 5.632743e-04   p_cons 4.647951e-01   p_joint 1.477876e-03

Joint ci ratio: 6.762675e-02	ci left: 1.427983e-03	ci right 1.528362e-03	k: 3354	n:2270000
Cons ci ratio: 2.792142e-03	ci left: 4.641056e-01	ci right 4.654037e-01	k: 1054993	n:2270000
KS ci ratio: 1.096651e-01	ci left: 5.316995e-04	ci right 5.938152e-04	k: 1276	n:2270000
HCN1   2270000 perm   2515 sec   (903 perm/sec)   p_kst 5.621145e-04   p_cons 4.647546e-01   p_joint 1.477533e-03

Joint ci ratio: 6.740600e-02	ci left: 1.431206e-03	ci right 1.531471e-03	k: 3376	n:2280000
Cons ci ratio: 2.786055e-03	ci left: 4.640994e-01	ci right 4.653946e-01	k: 1059623	n:2280000
KS ci ratio: 1.094938e-01	ci left: 5.310738e-04	ci right 5.930132e-04	k: 1280	n:2280000
HCN1   2280000 perm   2535 sec   (900 perm/sec)   p_kst 5.614035e-04   p_cons 4.647469e-01   p_joint 1.480702e-03

Joint ci ratio: 6.720721e-02	ci left: 1.433543e-03	ci right 1.533663e-03	k: 3396	n:2290000
Cons ci ratio: 2.780100e-03	ci left: 4.640766e-01	ci right 4.653689e-01	k: 1064215	n:2290000
KS ci ratio: 1.089001e-01	ci left: 5.347013e-04	ci right 5.967040e-04	k: 1294	n:2290000
HCN1   2290000 perm   2554 sec   (896 perm/sec)   p_kst 5.650655e-04   p_cons 4.647227e-01   p_joint 1.482969e-03

Joint ci ratio: 6.794248e-02	ci left: 1.396106e-03	ci right 1.494721e-03	k: 3323	n:2300000
Cons ci ratio: 2.774007e-03	ci left: 4.640857e-01	ci right 4.653753e-01	k: 1068880	n:2300000
KS ci ratio: 1.086905e-01	ci left: 5.344913e-04	ci right 5.963427e-04	k: 1299	n:2300000
HCN1   2300000 perm   2574 sec   (893 perm/sec)   p_kst 5.647826e-04   p_cons 4.647304e-01   p_joint 1.444783e-03

Joint ci ratio: 6.776937e-02	ci left: 1.397297e-03	ci right 1.495734e-03	k: 3340	n:2310000
Cons ci ratio: 2.767734e-03	ci left: 4.641341e-01	ci right 4.654209e-01	k: 1073636	n:2310000
KS ci ratio: 1.084821e-01	ci left: 5.342832e-04	ci right 5.959844e-04	k: 1304	n:2310000
HCN1   2310000 perm   2594 sec   (890 perm/sec)   p_kst 5.645022e-04   p_cons 4.647775e-01   p_joint 1.445887e-03

Joint ci ratio: 6.767835e-02	ci left: 1.395088e-03	ci right 1.493232e-03	k: 3349	n:2320000
Cons ci ratio: 2.761607e-03	ci left: 4.641636e-01	ci right 4.654477e-01	k: 1078349	n:2320000
KS ci ratio: 1.082749e-01	ci left: 5.340770e-04	ci right 5.956291e-04	k: 1309	n:2320000
HCN1   2320000 perm   2614 sec   (887 perm/sec)   p_kst 5.642241e-04   p_cons 4.648056e-01   p_joint 1.443534e-03

Joint ci ratio: 6.753739e-02	ci left: 1.395007e-03	ci right 1.492934e-03	k: 3363	n:2330000
Cons ci ratio: 2.755817e-03	ci left: 4.641392e-01	ci right 4.654205e-01	k: 1082937	n:2330000
KS ci ratio: 1.081924e-01	ci left: 5.326199e-04	ci right 5.939543e-04	k: 1311	n:2330000
HCN1   2330000 perm   2635 sec   (884 perm/sec)   p_kst 5.626609e-04   p_cons 4.647798e-01   p_joint 1.443348e-03

Joint ci ratio: 6.751750e-02	ci left: 1.389886e-03	ci right 1.487423e-03	k: 3365	n:2340000
Cons ci ratio: 2.750038e-03	ci left: 4.641198e-01	ci right 4.653983e-01	k: 1087536	n:2340000
KS ci ratio: 1.080279e-01	ci left: 5.320069e-04	ci right 5.931717e-04	k: 1315	n:2340000
HCN1   2340000 perm   2655 sec   (881 perm/sec)   p_kst 5.619658e-04   p_cons 4.647590e-01   p_joint 1.438034e-03

Joint ci ratio: 6.736755e-02	ci left: 1.390247e-03	ci right 1.487584e-03	k: 3380	n:2350000
Cons ci ratio: 2.744034e-03	ci left: 4.641477e-01	ci right 4.654235e-01	k: 1092246	n:2350000
KS ci ratio: 1.077010e-01	ci left: 5.330555e-04	ci right 5.941436e-04	k: 1323	n:2350000
HCN1   2350000 perm   2675 sec   (878 perm/sec)   p_kst 5.629787e-04   p_cons 4.647855e-01   p_joint 1.438298e-03

Joint ci ratio: 6.725828e-02	ci left: 1.388938e-03	ci right 1.486020e-03	k: 3391	n:2360000
Cons ci ratio: 2.738116e-03	ci left: 4.641669e-01	ci right 4.654400e-01	k: 1096936	n:2360000
KS ci ratio: 1.076604e-01	ci left: 5.312091e-04	ci right 5.920612e-04	k: 1324	n:2360000
HCN1   2360000 perm   2695 sec   (876 perm/sec)   p_kst 5.610169e-04   p_cons 4.648034e-01   p_joint 1.436864e-03

Joint ci ratio: 6.713965e-02	ci left: 1.388056e-03	ci right 1.484899e-03	k: 3403	n:2370000
Cons ci ratio: 2.732294e-03	ci left: 4.641754e-01	ci right 4.654458e-01	k: 1101601	n:2370000
KS ci ratio: 1.074175e-01	ci left: 5.314312e-04	ci right 5.921628e-04	k: 1330	n:2370000
HCN1   2370000 perm   2715 sec   (873 perm/sec)   p_kst 5.611814e-04   p_cons 4.648105e-01   p_joint 1.435865e-03

Joint ci ratio: 6.691385e-02	ci left: 1.391726e-03	ci right 1.488485e-03	k: 3426	n:2380000
Cons ci ratio: 2.726368e-03	ci left: 4.642095e-01	ci right 4.654772e-01	k: 1106327	n:2380000
KS ci ratio: 1.070961e-01	ci left: 5.324695e-04	ci right 5.931262e-04	k: 1338	n:2380000
HCN1   2380000 perm   2735 sec   (870 perm/sec)   p_kst 5.621849e-04   p_cons 4.648433e-01   p_joint 1.439496e-03

Joint ci ratio: 6.692383e-02	ci left: 1.385491e-03	ci right 1.481832e-03	k: 3425	n:2390000
Cons ci ratio: 2.720678e-03	ci left: 4.642073e-01	ci right 4.654723e-01	k: 1110967	n:2390000
KS ci ratio: 1.068967e-01	ci left: 5.322777e-04	ci right 5.927925e-04	k: 1343	n:2390000
HCN1   2390000 perm   2756 sec   (867 perm/sec)   p_kst 5.619247e-04   p_cons 4.648397e-01   p_joint 1.433054e-03

Joint ci ratio: 6.673896e-02	ci left: 1.387503e-03	ci right 1.483707e-03	k: 3444	n:2400000
Cons ci ratio: 2.715068e-03	ci left: 4.641967e-01	ci right 4.654592e-01	k: 1115587	n:2400000
KS ci ratio: 1.065011e-01	ci left: 5.341154e-04	ci right 5.946003e-04	k: 1353	n:2400000
HCN1   2400000 perm   2776 sec   (865 perm/sec)   p_kst 5.637500e-04   p_cons 4.648279e-01   p_joint 1.435000e-03

Joint ci ratio: 6.671008e-02	ci left: 1.382970e-03	ci right 1.478816e-03	k: 3447	n:2410000
Cons ci ratio: 2.709405e-03	ci left: 4.642025e-01	ci right 4.654623e-01	k: 1120246	n:2410000
KS ci ratio: 1.062659e-01	ci left: 5.343225e-04	ci right 5.946889e-04	k: 1359	n:2410000
HCN1   2410000 perm   2796 sec   (862 perm/sec)   p_kst 5.639004e-04   p_cons 4.648324e-01   p_joint 1.430290e-03

Joint ci ratio: 6.659433e-02	ci left: 1.382131e-03	ci right 1.477746e-03	k: 3459	n:2420000
Cons ci ratio: 2.703816e-03	ci left: 4.642012e-01	ci right 4.654584e-01	k: 1124888	n:2420000
KS ci ratio: 1.061490e-01	ci left: 5.333213e-04	ci right 5.935041e-04	k: 1362	n:2420000
HCN1   2420000 perm   2817 sec   (859 perm/sec)   p_kst 5.628099e-04   p_cons 4.648298e-01   p_joint 1.429339e-03

Joint ci ratio: 6.667176e-02	ci left: 1.373205e-03	ci right 1.468318e-03	k: 3451	n:2430000
Cons ci ratio: 2.698303e-03	ci left: 4.641921e-01	ci right 4.654467e-01	k: 1129511	n:2430000
KS ci ratio: 1.059548e-01	ci left: 5.331296e-04	ci right 5.931739e-04	k: 1367	n:2430000
HCN1   2430000 perm   2837 sec   (856 perm/sec)   p_kst 5.625514e-04   p_cons 4.648193e-01   p_joint 1.420165e-03

Joint ci ratio: 6.506825e-02	ci left: 1.436910e-03	ci right 1.533951e-03	k: 3623	n:2440000
Cons ci ratio: 2.692771e-03	ci left: 4.641929e-01	ci right 4.654449e-01	k: 1134158	n:2440000
KS ci ratio: 1.056847e-01	ci left: 5.337376e-04	ci right 5.936876e-04	k: 1374	n:2440000
HCN1   2440000 perm   2858 sec   (854 perm/sec)   p_kst 5.631148e-04   p_cons 4.648189e-01   p_joint 1.484836e-03

Joint ci ratio: 6.491614e-02	ci left: 1.437871e-03	ci right 1.534742e-03	k: 3640	n:2450000
Cons ci ratio: 2.687294e-03	ci left: 4.641896e-01	ci right 4.654391e-01	k: 1138795	n:2450000
KS ci ratio: 1.054931e-01	ci left: 5.335460e-04	ci right 5.933591e-04	k: 1379	n:2450000
HCN1   2450000 perm   2879 sec   (851 perm/sec)   p_kst 5.628571e-04   p_cons 4.648143e-01   p_joint 1.485714e-03

Joint ci ratio: 6.476509e-02	ci left: 1.438825e-03	ci right 1.535526e-03	k: 3657	n:2460000
Cons ci ratio: 2.681843e-03	ci left: 4.641880e-01	ci right 4.654349e-01	k: 1143436	n:2460000
KS ci ratio: 1.051507e-01	ci left: 5.349393e-04	ci right 5.947019e-04	k: 1388	n:2460000
HCN1   2460000 perm   2899 sec   (849 perm/sec)   p_kst 5.642276e-04   p_cons 4.648114e-01   p_joint 1.486585e-03

Joint ci ratio: 6.459749e-02	ci left: 1.440567e-03	ci right 1.537126e-03	k: 3676	n:2470000
Cons ci ratio: 2.676178e-03	ci left: 4.642321e-01	ci right 4.654765e-01	k: 1148190	n:2470000
KS ci ratio: 1.047741e-01	ci left: 5.367158e-04	ci right 5.964490e-04	k: 1398	n:2470000
HCN1   2470000 perm   2920 sec   (846 perm/sec)   p_kst 5.659919e-04   p_cons 4.648543e-01   p_joint 1.488259e-03

Joint ci ratio: 6.501515e-02	ci left: 1.416114e-03	ci right 1.511669e-03	k: 3629	n:2480000
Cons ci ratio: 2.670893e-03	ci left: 4.642118e-01	ci right 4.654537e-01	k: 1152785	n:2480000
KS ci ratio: 1.045130e-01	ci left: 5.373004e-04	ci right 5.969404e-04	k: 1405	n:2480000
HCN1   2480000 perm   2941 sec   (843 perm/sec)   p_kst 5.665323e-04   p_cons 4.648327e-01   p_joint 1.463306e-03

Joint ci ratio: 6.489015e-02	ci left: 1.415958e-03	ci right 1.511312e-03	k: 3643	n:2490000
Cons ci ratio: 2.665523e-03	ci left: 4.642133e-01	ci right 4.654527e-01	k: 1157434	n:2490000
KS ci ratio: 1.043276e-01	ci left: 5.370981e-04	ci right 5.966035e-04	k: 1410	n:2490000
HCN1   2490000 perm   2962 sec   (841 perm/sec)   p_kst 5.662651e-04   p_cons 4.648329e-01   p_joint 1.463052e-03

Joint ci ratio: 6.402517e-02	ci left: 1.449256e-03	ci right 1.545504e-03	k: 3742	n:2500000
Cons ci ratio: 2.660044e-03	ci left: 4.642412e-01	ci right 4.654781e-01	k: 1162149	n:2500000
KS ci ratio: 1.040331e-01	ci left: 5.380664e-04	ci right 5.975004e-04	k: 1418	n:2500000
HCN1   2500000 perm   2983 sec   (838 perm/sec)   p_kst 5.672000e-04   p_cons 4.648596e-01   p_joint 1.496800e-03

Joint ci ratio: 6.405107e-02	ci left: 1.442306e-03	ci right 1.538133e-03	k: 3739	n:2510000
Cons ci ratio: 2.654838e-03	ci left: 4.642238e-01	ci right 4.654583e-01	k: 1166751	n:2510000
KS ci ratio: 1.038503e-01	ci left: 5.378629e-04	ci right 5.971637e-04	k: 1423	n:2510000
HCN1   2510000 perm   3004 sec   (835 perm/sec)   p_kst 5.669323e-04   p_cons 4.648410e-01   p_joint 1.489641e-03

Joint ci ratio: 6.392301e-02	ci left: 1.442440e-03	ci right 1.538077e-03	k: 3754	n:2520000
Cons ci ratio: 2.649438e-03	ci left: 4.642491e-01	ci right 4.654811e-01	k: 1171460	n:2520000
KS ci ratio: 1.035236e-01	ci left: 5.392074e-04	ci right 5.984580e-04	k: 1432	n:2520000
HCN1   2520000 perm   3026 sec   (833 perm/sec)   p_kst 5.682540e-04   p_cons 4.648651e-01   p_joint 1.489683e-03

Joint ci ratio: 6.382115e-02	ci left: 1.441406e-03	ci right 1.536816e-03	k: 3766	n:2530000
Cons ci ratio: 2.644162e-03	ci left: 4.642568e-01	ci right 4.654864e-01	k: 1176125	n:2530000
KS ci ratio: 1.033075e-01	ci left: 5.393863e-04	ci right 5.985254e-04	k: 1438	n:2530000
HCN1   2530000 perm   3047 sec   (830 perm/sec)   p_kst 5.683794e-04   p_cons 4.648715e-01   p_joint 1.488538e-03

Joint ci ratio: 6.360189e-02	ci left: 1.445804e-03	ci right 1.541165e-03	k: 3792	n:2540000
Cons ci ratio: 2.638828e-03	ci left: 4.642813e-01	ci right 4.655085e-01	k: 1180833	n:2540000
KS ci ratio: 1.029859e-01	ci left: 5.407147e-04	ci right 5.998037e-04	k: 1447	n:2540000
HCN1   2540000 perm   3069 sec   (828 perm/sec)   p_kst 5.696850e-04   p_cons 4.648949e-01   p_joint 1.492913e-03

Joint ci ratio: 6.346816e-02	ci left: 1.446309e-03	ci right 1.541495e-03	k: 3808	n:2550000
Cons ci ratio: 2.633715e-03	ci left: 4.642700e-01	ci right 4.654948e-01	k: 1185450	n:2550000
KS ci ratio: 1.027732e-01	ci left: 5.408866e-04	ci right 5.998650e-04	k: 1453	n:2550000
HCN1   2550000 perm   3091 sec   (825 perm/sec)   p_kst 5.698039e-04   p_cons 4.648824e-01   p_joint 1.493333e-03

Joint ci ratio: 6.336015e-02	ci left: 1.445657e-03	ci right 1.540632e-03	k: 3821	n:2560000
Cons ci ratio: 2.628463e-03	ci left: 4.642908e-01	ci right 4.655132e-01	k: 1190149	n:2560000
KS ci ratio: 1.025267e-01	ci left: 5.414380e-04	ci right 6.003263e-04	k: 1460	n:2560000
HCN1   2560000 perm   3112 sec   (823 perm/sec)   p_kst 5.703125e-04   p_cons 4.649020e-01   p_joint 1.492578e-03

Joint ci ratio: 6.326095e-02	ci left: 1.444627e-03	ci right 1.539381e-03	k: 3833	n:2570000
Cons ci ratio: 2.623430e-03	ci left: 4.642757e-01	ci right 4.654956e-01	k: 1194756	n:2570000
KS ci ratio: 1.023517e-01	ci left: 5.412269e-04	ci right 5.999857e-04	k: 1465	n:2570000
HCN1   2570000 perm   3134 sec   (820 perm/sec)   p_kst 5.700389e-04   p_cons 4.648856e-01   p_joint 1.491440e-03

Joint ci ratio: 6.308834e-02	ci left: 1.447039e-03	ci right 1.541682e-03	k: 3854	n:2580000
Cons ci ratio: 2.618286e-03	ci left: 4.642874e-01	ci right 4.655050e-01	k: 1199432	n:2580000
KS ci ratio: 1.021082e-01	ci left: 5.417729e-04	ci right 6.004427e-04	k: 1472	n:2580000
HCN1   2580000 perm   3156 sec   (818 perm/sec)   p_kst 5.705426e-04   p_cons 4.648961e-01   p_joint 1.493798e-03

Joint ci ratio: 6.294967e-02	ci left: 1.447912e-03	ci right 1.542397e-03	k: 3871	n:2590000
Cons ci ratio: 2.613252e-03	ci left: 4.642835e-01	ci right 4.654988e-01	k: 1204068	n:2590000
KS ci ratio: 1.018664e-01	ci left: 5.423149e-04	ci right 6.008960e-04	k: 1479	n:2590000
HCN1   2590000 perm   3178 sec   (815 perm/sec)   p_kst 5.710425e-04   p_cons 4.648911e-01   p_joint 1.494595e-03

Joint ci ratio: 6.307232e-02	ci left: 1.436665e-03	ci right 1.530605e-03	k: 3856	n:2600000
Cons ci ratio: 2.608387e-03	ci left: 4.642532e-01	ci right 4.654661e-01	k: 1208635	n:2600000
KS ci ratio: 1.016263e-01	ci left: 5.428529e-04	ci right 6.013457e-04	k: 1486	n:2600000
HCN1   2600000 perm   3200 sec   (813 perm/sec)   p_kst 5.715385e-04   p_cons 4.648596e-01   p_joint 1.483077e-03

Joint ci ratio: 6.364519e-02	ci left: 1.405142e-03	ci right 1.497886e-03	k: 3787	n:2610000
Cons ci ratio: 2.603423e-03	ci left: 4.642472e-01	ci right 4.654578e-01	k: 1213265	n:2610000
KS ci ratio: 1.014559e-01	ci left: 5.426401e-04	ci right 6.010060e-04	k: 1491	n:2610000
HCN1   2610000 perm   3221 sec   (810 perm/sec)   p_kst 5.712644e-04   p_cons 4.648525e-01   p_joint 1.450958e-03

Joint ci ratio: 6.351119e-02	ci left: 1.405788e-03	ci right 1.498373e-03	k: 3803	n:2620000
Cons ci ratio: 2.598531e-03	ci left: 4.642329e-01	ci right 4.654412e-01	k: 1217873	n:2620000
KS ci ratio: 1.011850e-01	ci left: 5.435450e-04	ci right 6.018429e-04	k: 1499	n:2620000
HCN1   2620000 perm   3243 sec   (808 perm/sec)   p_kst 5.721374e-04   p_cons 4.648370e-01   p_joint 1.451527e-03

Joint ci ratio: 6.338633e-02	ci left: 1.406056e-03	ci right 1.498469e-03	k: 3818	n:2630000
Cons ci ratio: 2.593644e-03	ci left: 4.642229e-01	ci right 4.654289e-01	k: 1222492	n:2630000
KS ci ratio: 1.009497e-01	ci left: 5.440726e-04	ci right 6.022833e-04	k: 1506	n:2630000
HCN1   2630000 perm   3265 sec   (805 perm/sec)   p_kst 5.726236e-04   p_cons 4.648259e-01   p_joint 1.451711e-03

Joint ci ratio: 6.322094e-02	ci left: 1.408186e-03	ci right 1.500489e-03	k: 3838	n:2640000
Cons ci ratio: 2.588726e-03	ci left: 4.642243e-01	ci right 4.654280e-01	k: 1227141	n:2640000
KS ci ratio: 1.006495e-01	ci left: 5.453349e-04	ci right 6.034969e-04	k: 1515	n:2640000
HCN1   2640000 perm   3287 sec   (803 perm/sec)   p_kst 5.738636e-04   p_cons 4.648261e-01   p_joint 1.453788e-03

Joint ci ratio: 6.304865e-02	ci left: 1.410672e-03	ci right 1.502876e-03	k: 3859	n:2650000
Cons ci ratio: 2.583821e-03	ci left: 4.642284e-01	ci right 4.654298e-01	k: 1231797	n:2650000
KS ci ratio: 1.004179e-01	ci left: 5.458521e-04	ci right 6.039275e-04	k: 1522	n:2650000
HCN1   2650000 perm   3310 sec   (801 perm/sec)   p_kst 5.743396e-04   p_cons 4.648291e-01   p_joint 1.456226e-03

Joint ci ratio: 6.291024e-02	ci left: 1.411659e-03	ci right 1.503718e-03	k: 3876	n:2660000
Cons ci ratio: 2.579202e-03	ci left: 4.641828e-01	ci right 4.653819e-01	k: 1236321	n:2660000
KS ci ratio: 1.001552e-01	ci left: 5.467322e-04	ci right 6.047400e-04	k: 1530	n:2660000
HCN1   2660000 perm   3332 sec   (798 perm/sec)   p_kst 5.751880e-04   p_cons 4.647823e-01   p_joint 1.457143e-03

Joint ci ratio: 6.276467e-02	ci left: 1.413007e-03	ci right 1.504933e-03	k: 3894	n:2670000
Cons ci ratio: 2.574385e-03	ci left: 4.641806e-01	ci right 4.653775e-01	k: 1240960	n:2670000
KS ci ratio: 9.992697e-02	ci left: 5.472406e-04	ci right 6.051623e-04	k: 1537	n:2670000
HCN1   2670000 perm   3354 sec   (796 perm/sec)   p_kst 5.756554e-04   p_cons 4.647790e-01   p_joint 1.458427e-03

Outputting figure to mutsig2_images.part000000000077/HCN1.14_2705_2670000_0.00057566_0.46478_0.0014584.png
                gene_name: HCN1
               theta_stop: 0.100 
                    nperm: 2670000 
                     p_ks: 0.00058 
        ci_ks_bounds_left: 0.00055 
       ci_ks_bounds_right: 0.00061 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.0015 
     ci_joint_bounds_left: 0.0014 
    ci_joint_bounds_right: 0.0015 

Current progress: 3 percent done.
HECW2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.228335e-03	ci left: 9.635202e-01	ci right 9.706043e-01	k: 9672	n:10000
KS ci ratio: 8.041207e-03	ci left: 9.556593e-01	ci right 9.634701e-01	k: 9597	n:10000
HECW2   10000 perm   2 sec   (4353 perm/sec)   p_kst 9.597000e-01   p_cons 9.672000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HECW2.14_4831_10000_0.9597_0.9672_1.png
                gene_name: HECW2
               theta_stop: 0.0080 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
HDAC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.462034e-02	ci left: 7.081598e-01	ci right 7.259136e-01	k: 7171	n:10000
Cons ci ratio: 2.729774e-02	ci left: 6.641089e-01	ci right 6.825900e-01	k: 6734	n:10000
KS ci ratio: 3.743116e-02	ci left: 5.131551e-01	ci right 5.328315e-01	k: 5230	n:10000
HDAC9   10000 perm   2 sec   (4717 perm/sec)   p_kst 5.230000e-01   p_cons 6.734000e-01   p_joint 7.171000e-01

Outputting figure to mutsig2_images.part000000000077/HDAC9.13_3447_10000_0.523_0.6734_0.7171.png
                gene_name: HDAC9
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 7 percent done.
HDX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.268605e-02	ci left: 7.404812e-01	ci right 7.575735e-01	k: 7491	n:10000
Cons ci ratio: 1.898024e-02	ci left: 8.022727e-01	ci right 8.177463e-01	k: 8101	n:10000
KS ci ratio: 3.259309e-02	ci left: 5.814892e-01	ci right 6.008577e-01	k: 5912	n:10000
HDX   10000 perm   2 sec   (5086 perm/sec)   p_kst 5.912000e-01   p_cons 8.101000e-01   p_joint 7.491000e-01

Outputting figure to mutsig2_images.part000000000077/HDX.11_2109_10000_0.5912_0.8101_0.7491.png
                gene_name: HDX
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 9 percent done.
HDLBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.583828e-02	ci left: 6.879873e-01	ci right 7.060978e-01	k: 6971	n:10000
Cons ci ratio: 4.830206e-02	ci left: 3.873915e-01	ci right 4.066685e-01	k: 3970	n:10000
KS ci ratio: 1.207470e-02	ci left: 9.077165e-01	ci right 9.188414e-01	k: 9134	n:10000
HDLBP   10000 perm   2 sec   (4559 perm/sec)   p_kst 9.134000e-01   p_cons 3.970000e-01   p_joint 6.971000e-01

Outputting figure to mutsig2_images.part000000000077/HDLBP.10_3911_10000_0.9134_0.397_0.6971.png
                gene_name: HDLBP
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 10 percent done.
HEATR7B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.201483e-01	ci left: 9.039166e-02	ci right 1.020448e-01	k: 961	n:10000
Cons ci ratio: 1.083685e-01	ci left: 1.093957e-01	ci right 1.220291e-01	k: 1156	n:10000
KS ci ratio: 1.528606e-01	ci left: 5.696592e-02	ci right 6.649137e-02	k: 616	n:10000
HEATR7B2   10000 perm   2 sec   (4572 perm/sec)   p_kst 6.160000e-02   p_cons 1.156000e-01   p_joint 9.610000e-02

Joint ci ratio: 1.026161e-01	ci left: 6.450023e-02	ci right 7.152600e-02	k: 1359	n:20000
Cons ci ratio: 7.920726e-02	ci left: 1.047622e-01	ci right 1.134519e-01	k: 2181	n:20000
KS ci ratio: 1.039761e-01	ci left: 6.289002e-02	ci right 6.983670e-02	k: 1326	n:20000
HEATR7B2   20000 perm   5 sec   (4155 perm/sec)   p_kst 6.630000e-02   p_cons 1.090500e-01   p_joint 6.795000e-02

Joint ci ratio: 9.696037e-02	ci left: 4.915615e-02	ci right 5.419779e-02	k: 1549	n:30000
Cons ci ratio: 6.641705e-02	ci left: 1.005675e-01	ci right 1.075094e-01	k: 3120	n:30000
KS ci ratio: 8.423012e-02	ci left: 6.449025e-02	ci right 7.019389e-02	k: 2019	n:30000
HEATR7B2   30000 perm   7 sec   (4020 perm/sec)   p_kst 6.730000e-02   p_cons 1.040000e-01   p_joint 5.163333e-02

Outputting figure to mutsig2_images.part000000000077/HEATR7B2.10_4926_30000_0.0673_0.104_0.051633.png
                gene_name: HEATR7B2
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.054 

Current progress: 12 percent done.
HCN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 5.644158e-01	ci left: 3.455366e-03	ci right 6.245157e-03	k: 47	n:10000
KS ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
HCN4   10000 perm   2 sec   (5178 perm/sec)   p_kst 1.400000e-03   p_cons 4.700000e-03   p_joint 0

Joint ci ratio: 4.319925e-01	ci left: 3.217547e-03	ci right 5.031303e-03	k: 81	n:20000
Cons ci ratio: 3.929888e-01	ci left: 3.979794e-03	ci right 5.968329e-03	k: 98	n:20000
KS ci ratio: 6.115581e-01	ci left: 1.429202e-03	ci right 2.722447e-03	k: 40	n:20000
HCN4   20000 perm   4 sec   (4666 perm/sec)   p_kst 2.000000e-03   p_cons 4.900000e-03   p_joint 4.050000e-03

Joint ci ratio: 3.664373e-01	ci left: 3.105244e-03	ci right 4.526846e-03	k: 113	n:30000
Cons ci ratio: 3.192602e-01	ci left: 4.202752e-03	ci right 5.828718e-03	k: 149	n:30000
KS ci ratio: 5.013857e-01	ci left: 1.526547e-03	ci right 2.573657e-03	k: 60	n:30000
HCN4   30000 perm   7 sec   (4478 perm/sec)   p_kst 2.000000e-03   p_cons 4.966667e-03   p_joint 3.766667e-03

Joint ci ratio: 3.634302e-01	ci left: 2.374173e-03	ci right 3.450008e-03	k: 115	n:40000
Cons ci ratio: 2.757965e-01	ci left: 4.332419e-03	ci right 5.740914e-03	k: 200	n:40000
KS ci ratio: 4.247264e-01	ci left: 1.675377e-03	ci right 2.599293e-03	k: 84	n:40000
HCN4   40000 perm   9 sec   (4364 perm/sec)   p_kst 2.100000e-03   p_cons 5.000000e-03   p_joint 2.875000e-03

Joint ci ratio: 3.733423e-01	ci left: 1.790338e-03	ci right 2.629137e-03	k: 109	n:50000
Cons ci ratio: 2.434157e-01	ci left: 4.532077e-03	ci right 5.806414e-03	k: 257	n:50000
KS ci ratio: 3.821471e-01	ci left: 1.699817e-03	ci right 2.519713e-03	k: 104	n:50000
HCN4   50000 perm   12 sec   (4266 perm/sec)   p_kst 2.080000e-03   p_cons 5.140000e-03   p_joint 2.180000e-03

Joint ci ratio: 3.605072e-01	ci left: 1.612962e-03	ci right 2.336571e-03	k: 117	n:60000
Cons ci ratio: 2.238855e-01	ci left: 4.514274e-03	ci right 5.667729e-03	k: 304	n:60000
KS ci ratio: 3.545362e-01	ci left: 1.673650e-03	ci right 2.409186e-03	k: 121	n:60000
HCN4   60000 perm   15 sec   (4126 perm/sec)   p_kst 2.016667e-03   p_cons 5.066667e-03   p_joint 1.950000e-03

Joint ci ratio: 3.545882e-01	ci left: 1.434524e-03	ci right 2.065074e-03	k: 121	n:70000
Cons ci ratio: 2.057816e-01	ci left: 4.626427e-03	ci right 5.700934e-03	k: 360	n:70000
KS ci ratio: 3.274695e-01	ci left: 1.708910e-03	ci right 2.390568e-03	k: 142	n:70000
HCN4   70000 perm   17 sec   (4063 perm/sec)   p_kst 2.028571e-03   p_cons 5.142857e-03   p_joint 1.728571e-03

Joint ci ratio: 3.503393e-01	ci left: 1.289370e-03	ci right 1.847778e-03	k: 124	n:80000
Cons ci ratio: 1.905446e-01	ci left: 4.760989e-03	ci right 5.775398e-03	k: 420	n:80000
KS ci ratio: 3.067232e-01	ci left: 1.725422e-03	ci right 2.361557e-03	k: 162	n:80000
HCN4   80000 perm   20 sec   (3997 perm/sec)   p_kst 2.025000e-03   p_cons 5.250000e-03   p_joint 1.550000e-03

Joint ci ratio: 2.506105e-01	ci left: 2.371545e-03	ci right 3.061129e-03	k: 243	n:90000
Cons ci ratio: 1.786311e-01	ci left: 4.846700e-03	ci right 5.807830e-03	k: 478	n:90000
KS ci ratio: 2.951904e-01	ci left: 1.667243e-03	ci right 2.254491e-03	k: 175	n:90000
HCN4   90000 perm   23 sec   (3937 perm/sec)   p_kst 1.944444e-03   p_cons 5.311111e-03   p_joint 2.700000e-03

Joint ci ratio: 2.516808e-01	ci left: 2.115612e-03	ci right 2.733814e-03	k: 241	n:100000
Cons ci ratio: 1.677651e-01	ci left: 4.974335e-03	ci right 5.894709e-03	k: 542	n:100000
KS ci ratio: 2.790118e-01	ci left: 1.695412e-03	ci right 2.254108e-03	k: 196	n:100000
HCN4   100000 perm   26 sec   (3880 perm/sec)   p_kst 1.960000e-03   p_cons 5.420000e-03   p_joint 2.410000e-03

Joint ci ratio: 2.360882e-01	ci left: 2.204979e-03	ci right 2.803551e-03	k: 274	n:110000
Cons ci ratio: 1.601331e-01	ci left: 4.984180e-03	ci right 5.860388e-03	k: 595	n:110000
KS ci ratio: 2.646240e-01	ci left: 1.727666e-03	ci right 2.262773e-03	k: 218	n:110000
HCN4   110000 perm   29 sec   (3826 perm/sec)   p_kst 1.981818e-03   p_cons 5.409091e-03   p_joint 2.490909e-03

Joint ci ratio: 2.245415e-01	ci left: 2.248967e-03	ci right 2.825493e-03	k: 303	n:120000
Cons ci ratio: 1.515887e-01	ci left: 5.121446e-03	ci right 5.969386e-03	k: 664	n:120000
KS ci ratio: 2.517319e-01	ci left: 1.762969e-03	ci right 2.278240e-03	k: 241	n:120000
HCN4   120000 perm   32 sec   (3770 perm/sec)   p_kst 2.008333e-03   p_cons 5.533333e-03   p_joint 2.525000e-03

Joint ci ratio: 2.116895e-01	ci left: 2.352335e-03	ci right 2.916369e-03	k: 341	n:130000
Cons ci ratio: 1.446772e-01	ci left: 5.208979e-03	ci right 6.028695e-03	k: 729	n:130000
KS ci ratio: 2.374352e-01	ci left: 1.844002e-03	ci right 2.347852e-03	k: 271	n:130000
HCN4   130000 perm   35 sec   (3715 perm/sec)   p_kst 2.084615e-03   p_cons 5.607692e-03   p_joint 2.623077e-03

Joint ci ratio: 2.276036e-01	ci left: 1.873737e-03	ci right 2.361538e-03	k: 295	n:140000
Cons ci ratio: 1.396070e-01	ci left: 5.208908e-03	ci right 5.997495e-03	k: 783	n:140000
KS ci ratio: 2.291605e-01	ci left: 1.846797e-03	ci right 2.331339e-03	k: 291	n:140000
HCN4   140000 perm   38 sec   (3667 perm/sec)   p_kst 2.078571e-03   p_cons 5.592857e-03   p_joint 2.107143e-03

Joint ci ratio: 2.238621e-01	ci left: 1.811711e-03	ci right 2.274542e-03	k: 305	n:150000
Cons ci ratio: 1.353602e-01	ci left: 5.183512e-03	ci right 5.942459e-03	k: 833	n:150000
KS ci ratio: 2.209860e-01	ci left: 1.862079e-03	ci right 2.330834e-03	k: 313	n:150000
HCN4   150000 perm   41 sec   (3618 perm/sec)   p_kst 2.086667e-03   p_cons 5.553333e-03   p_joint 2.033333e-03

Joint ci ratio: 2.136282e-01	ci left: 1.875718e-03	ci right 2.330126e-03	k: 335	n:160000
Cons ci ratio: 1.309584e-01	ci left: 5.203930e-03	ci right 5.939161e-03	k: 890	n:160000
KS ci ratio: 2.120529e-01	ci left: 1.905306e-03	ci right 2.363035e-03	k: 340	n:160000
HCN4   160000 perm   45 sec   (3571 perm/sec)   p_kst 2.125000e-03   p_cons 5.562500e-03   p_joint 2.093750e-03

Joint ci ratio: 1.658229e-01	ci left: 3.004739e-03	ci right 3.553593e-03	k: 556	n:170000
Cons ci ratio: 1.227954e-01	ci left: 5.592773e-03	ci right 6.330111e-03	k: 1012	n:170000
KS ci ratio: 2.060960e-01	ci left: 1.904717e-03	ci right 2.347831e-03	k: 360	n:170000
HCN4   170000 perm   48 sec   (3523 perm/sec)   p_kst 2.117647e-03   p_cons 5.952941e-03   p_joint 3.270588e-03

Joint ci ratio: 2.457884e-01	ci left: 1.237781e-03	ci right 1.589702e-03	k: 253	n:180000
Cons ci ratio: 1.228769e-01	ci left: 5.276625e-03	ci right 5.972776e-03	k: 1011	n:180000
KS ci ratio: 2.008788e-01	ci left: 1.899076e-03	ci right 2.328323e-03	k: 379	n:180000
HCN4   180000 perm   52 sec   (3479 perm/sec)   p_kst 2.105556e-03   p_cons 5.616667e-03   p_joint 1.405556e-03

Joint ci ratio: 2.472641e-01	ci left: 1.157815e-03	ci right 1.489280e-03	k: 250	n:190000
Cons ci ratio: 1.196121e-01	ci left: 5.284708e-03	ci right 5.962089e-03	k: 1067	n:190000
KS ci ratio: 1.953044e-01	ci left: 1.909173e-03	ci right 2.327303e-03	k: 401	n:190000
HCN4   190000 perm   55 sec   (3436 perm/sec)   p_kst 2.110526e-03   p_cons 5.615789e-03   p_joint 1.315789e-03

Joint ci ratio: 1.569327e-01	ci left: 2.865896e-03	ci right 3.358680e-03	k: 621	n:200000
Cons ci ratio: 1.170668e-01	ci left: 5.248510e-03	ci right 5.905945e-03	k: 1114	n:200000
KS ci ratio: 1.894990e-01	ci left: 1.932697e-03	ci right 2.341948e-03	k: 426	n:200000
HCN4   200000 perm   59 sec   (3393 perm/sec)   p_kst 2.130000e-03   p_cons 5.570000e-03   p_joint 3.105000e-03

Joint ci ratio: 1.648396e-01	ci left: 2.464304e-03	ci right 2.911503e-03	k: 563	n:210000
Cons ci ratio: 1.142332e-01	ci left: 5.257535e-03	ci right 5.899085e-03	k: 1170	n:210000
KS ci ratio: 1.852118e-01	ci left: 1.931435e-03	ci right 2.330127e-03	k: 446	n:210000
HCN4   210000 perm   63 sec   (3350 perm/sec)   p_kst 2.123810e-03   p_cons 5.571429e-03   p_joint 2.680952e-03

Joint ci ratio: 1.621342e-01	ci left: 2.435118e-03	ci right 2.869060e-03	k: 582	n:220000
Cons ci ratio: 1.120560e-01	ci left: 5.221724e-03	ci right 5.845958e-03	k: 1216	n:220000
KS ci ratio: 1.815930e-01	ci left: 1.921704e-03	ci right 2.309783e-03	k: 464	n:220000
HCN4   220000 perm   66 sec   (3309 perm/sec)   p_kst 2.109091e-03   p_cons 5.527273e-03   p_joint 2.645455e-03

Joint ci ratio: 1.594250e-01	ci left: 2.412699e-03	ci right 2.834774e-03	k: 602	n:230000
Cons ci ratio: 1.095635e-01	ci left: 5.231424e-03	ci right 5.842008e-03	k: 1272	n:230000
KS ci ratio: 1.787355e-01	ci left: 1.900426e-03	ci right 2.277516e-03	k: 479	n:230000
HCN4   230000 perm   70 sec   (3269 perm/sec)   p_kst 2.082609e-03   p_cons 5.530435e-03   p_joint 2.617391e-03

Joint ci ratio: 1.547445e-01	ci left: 2.460282e-03	ci right 2.876874e-03	k: 639	n:240000
Cons ci ratio: 1.072707e-01	ci left: 5.236401e-03	ci right 5.833969e-03	k: 1327	n:240000
KS ci ratio: 1.732255e-01	ci left: 1.944723e-03	ci right 2.317464e-03	k: 510	n:240000
HCN4   240000 perm   74 sec   (3229 perm/sec)   p_kst 2.125000e-03   p_cons 5.529167e-03   p_joint 2.662500e-03

Joint ci ratio: 1.692946e-01	ci left: 1.958821e-03	ci right 2.324875e-03	k: 534	n:250000
Cons ci ratio: 1.053462e-01	ci left: 5.217731e-03	ci right 5.801823e-03	k: 1376	n:250000
KS ci ratio: 1.694534e-01	ci left: 1.954990e-03	ci right 2.320706e-03	k: 533	n:250000
HCN4   250000 perm   78 sec   (3191 perm/sec)   p_kst 2.132000e-03   p_cons 5.504000e-03   p_joint 2.136000e-03

Joint ci ratio: 1.665177e-01	ci left: 1.949802e-03	ci right 2.307595e-03	k: 552	n:260000
Cons ci ratio: 1.033760e-01	ci left: 5.215574e-03	ci right 5.787842e-03	k: 1429	n:260000
KS ci ratio: 1.674304e-01	ci left: 1.927688e-03	ci right 2.283557e-03	k: 546	n:260000
HCN4   260000 perm   82 sec   (3153 perm/sec)   p_kst 2.100000e-03   p_cons 5.496154e-03   p_joint 2.123077e-03

Joint ci ratio: 1.628756e-01	ci left: 1.966365e-03	ci right 2.318532e-03	k: 577	n:270000
Cons ci ratio: 1.013407e-01	ci left: 5.231722e-03	ci right 5.793787e-03	k: 1487	n:270000
KS ci ratio: 1.630170e-01	ci left: 1.962812e-03	ci right 2.314678e-03	k: 576	n:270000
HCN4   270000 perm   87 sec   (3117 perm/sec)   p_kst 2.133333e-03   p_cons 5.507407e-03   p_joint 2.137037e-03

Joint ci ratio: 1.606686e-01	ci left: 1.950966e-03	ci right 2.295183e-03	k: 593	n:280000
Cons ci ratio: 9.948576e-02	ci left: 5.239853e-03	ci right 5.791886e-03	k: 1543	n:280000
KS ci ratio: 1.606686e-01	ci left: 1.950966e-03	ci right 2.295183e-03	k: 593	n:280000
HCN4   280000 perm   91 sec   (3081 perm/sec)   p_kst 2.117857e-03   p_cons 5.510714e-03   p_joint 2.117857e-03

Joint ci ratio: 1.616316e-01	ci left: 1.860520e-03	ci right 2.190938e-03	k: 586	n:290000
Cons ci ratio: 9.797572e-02	ci left: 5.220596e-03	ci right 5.761772e-03	k: 1591	n:290000
KS ci ratio: 1.586793e-01	ci left: 1.933347e-03	ci right 2.269830e-03	k: 608	n:290000
HCN4   290000 perm   95 sec   (3046 perm/sec)   p_kst 2.096552e-03   p_cons 5.486207e-03   p_joint 2.020690e-03

Joint ci ratio: 1.598730e-01	ci left: 1.840091e-03	ci right 2.162984e-03	k: 599	n:300000
Cons ci ratio: 9.653240e-02	ci left: 5.202682e-03	ci right 5.733606e-03	k: 1639	n:300000
KS ci ratio: 1.562610e-01	ci left: 1.929740e-03	ci right 2.259997e-03	k: 627	n:300000
HCN4   300000 perm   100 sec   (3012 perm/sec)   p_kst 2.090000e-03   p_cons 5.463333e-03   p_joint 1.996667e-03

Joint ci ratio: 1.652050e-01	ci left: 1.663125e-03	ci right 1.965665e-03	k: 561	n:310000
Cons ci ratio: 9.777733e-02	ci left: 4.905773e-03	ci right 5.413223e-03	k: 1598	n:310000
KS ci ratio: 1.541889e-01	ci left: 1.920198e-03	ci right 2.244062e-03	k: 644	n:310000
HCN4   310000 perm   104 sec   (2978 perm/sec)   p_kst 2.077419e-03   p_cons 5.154839e-03   p_joint 1.809677e-03

Joint ci ratio: 1.711055e-01	ci left: 1.497387e-03	ci right 1.780511e-03	k: 523	n:320000
Cons ci ratio: 9.646035e-02	ci left: 4.886625e-03	ci right 5.384902e-03	k: 1642	n:320000
KS ci ratio: 1.513972e-01	ci left: 1.932325e-03	ci right 2.251799e-03	k: 668	n:320000
HCN4   320000 perm   109 sec   (2936 perm/sec)   p_kst 2.087500e-03   p_cons 5.131250e-03   p_joint 1.634375e-03

Joint ci ratio: 1.714377e-01	ci left: 1.446208e-03	ci right 1.720240e-03	k: 521	n:330000
Cons ci ratio: 9.508194e-02	ci left: 4.880515e-03	ci right 5.370661e-03	k: 1690	n:330000
KS ci ratio: 1.496197e-01	ci left: 1.920428e-03	ci right 2.233873e-03	k: 684	n:330000
HCN4   330000 perm   114 sec   (2904 perm/sec)   p_kst 2.072727e-03   p_cons 5.121212e-03   p_joint 1.578788e-03

Joint ci ratio: 1.680887e-01	ci left: 1.462814e-03	ci right 1.734030e-03	k: 542	n:340000
Cons ci ratio: 9.365278e-02	ci left: 4.886303e-03	ci right 5.369250e-03	k: 1742	n:340000
KS ci ratio: 1.473777e-01	ci left: 1.923415e-03	ci right 2.232229e-03	k: 705	n:340000
HCN4   340000 perm   118 sec   (2873 perm/sec)   p_kst 2.073529e-03   p_cons 5.123529e-03   p_joint 1.594118e-03

Joint ci ratio: 1.659633e-01	ci left: 1.459347e-03	ci right 1.726157e-03	k: 556	n:350000
Cons ci ratio: 9.244161e-02	ci left: 4.875063e-03	ci right 5.350330e-03	k: 1788	n:350000
KS ci ratio: 1.449341e-01	ci left: 1.934525e-03	ci right 2.239527e-03	k: 729	n:350000
HCN4   350000 perm   123 sec   (2843 perm/sec)   p_kst 2.082857e-03   p_cons 5.108571e-03   p_joint 1.588571e-03

Joint ci ratio: 1.642048e-01	ci left: 1.450765e-03	ci right 1.712918e-03	k: 568	n:360000
Cons ci ratio: 9.117641e-02	ci left: 4.875345e-03	ci right 5.343787e-03	k: 1838	n:360000
KS ci ratio: 1.436622e-01	ci left: 1.915594e-03	ci right 2.214734e-03	k: 742	n:360000
HCN4   360000 perm   128 sec   (2815 perm/sec)   p_kst 2.061111e-03   p_cons 5.105556e-03   p_joint 1.577778e-03

Joint ci ratio: 1.668730e-01	ci left: 1.364917e-03	ci right 1.615967e-03	k: 550	n:370000
Cons ci ratio: 9.008169e-02	ci left: 4.862442e-03	ci right 5.323739e-03	k: 1883	n:370000
KS ci ratio: 1.421408e-01	ci left: 1.905518e-03	ci right 2.199665e-03	k: 758	n:370000
HCN4   370000 perm   133 sec   (2781 perm/sec)   p_kst 2.048649e-03   p_cons 5.089189e-03   p_joint 1.486486e-03

Joint ci ratio: 1.673331e-01	ci left: 1.321431e-03	ci right 1.565221e-03	k: 547	n:380000
Cons ci ratio: 8.902547e-02	ci left: 4.850251e-03	ci right 5.304715e-03	k: 1928	n:380000
KS ci ratio: 1.403044e-01	ci left: 1.906144e-03	ci right 2.196269e-03	k: 778	n:380000
HCN4   380000 perm   138 sec   (2751 perm/sec)   p_kst 2.047368e-03   p_cons 5.073684e-03   p_joint 1.439474e-03

Joint ci ratio: 1.661263e-01	ci left: 1.307204e-03	ci right 1.546456e-03	k: 555	n:390000
Cons ci ratio: 8.809530e-02	ci left: 4.828683e-03	ci right 5.276156e-03	k: 1969	n:390000
KS ci ratio: 1.387114e-01	ci left: 1.901812e-03	ci right 2.187719e-03	k: 796	n:390000
HCN4   390000 perm   143 sec   (2721 perm/sec)   p_kst 2.041026e-03   p_cons 5.048718e-03   p_joint 1.423077e-03

Joint ci ratio: 1.637860e-01	ci left: 1.312873e-03	ci right 1.549444e-03	k: 571	n:400000
Cons ci ratio: 8.691180e-02	ci left: 4.840013e-03	ci right 5.282204e-03	k: 2023	n:400000
KS ci ratio: 1.369192e-01	ci left: 1.904956e-03	ci right 2.187335e-03	k: 817	n:400000
HCN4   400000 perm   148 sec   (2694 perm/sec)   p_kst 2.042500e-03   p_cons 5.057500e-03   p_joint 1.427500e-03

Joint ci ratio: 1.620950e-01	ci left: 1.308926e-03	ci right 1.542114e-03	k: 583	n:410000
Cons ci ratio: 8.612956e-02	ci left: 4.810251e-03	ci right 5.245569e-03	k: 2060	n:410000
KS ci ratio: 1.350335e-01	ci left: 1.912684e-03	ci right 2.191989e-03	k: 840	n:410000
HCN4   410000 perm   154 sec   (2667 perm/sec)   p_kst 2.048780e-03   p_cons 5.024390e-03   p_joint 1.421951e-03

Joint ci ratio: 1.601864e-01	ci left: 1.309751e-03	ci right 1.540073e-03	k: 597	n:420000
Cons ci ratio: 8.524563e-02	ci left: 4.795907e-03	ci right 5.225251e-03	k: 2103	n:420000
KS ci ratio: 1.331465e-01	ci left: 1.922370e-03	ci right 2.198857e-03	k: 864	n:420000
HCN4   420000 perm   159 sec   (2641 perm/sec)   p_kst 2.057143e-03   p_cons 5.007143e-03   p_joint 1.421429e-03

Joint ci ratio: 1.592583e-01	ci left: 1.294919e-03	ci right 1.521188e-03	k: 604	n:430000
Cons ci ratio: 8.434890e-02	ci left: 4.786805e-03	ci right 5.210605e-03	k: 2148	n:430000
KS ci ratio: 1.309679e-01	ci left: 1.942879e-03	ci right 2.217388e-03	k: 893	n:430000
HCN4   430000 perm   165 sec   (2614 perm/sec)   p_kst 2.076744e-03   p_cons 4.995349e-03   p_joint 1.404651e-03

Joint ci ratio: 1.607308e-01	ci left: 1.241487e-03	ci right 1.460618e-03	k: 593	n:440000
Cons ci ratio: 8.332733e-02	ci left: 4.795944e-03	ci right 5.215160e-03	k: 2201	n:440000
KS ci ratio: 1.292441e-01	ci left: 1.951494e-03	ci right 2.223312e-03	k: 917	n:440000
HCN4   440000 perm   170 sec   (2588 perm/sec)   p_kst 2.084091e-03   p_cons 5.002273e-03   p_joint 1.347727e-03

Joint ci ratio: 1.603283e-01	ci left: 1.220296e-03	ci right 1.435096e-03	k: 596	n:450000
Cons ci ratio: 8.239711e-02	ci left: 4.798177e-03	ci right 5.212681e-03	k: 2251	n:450000
KS ci ratio: 1.275866e-01	ci left: 1.959748e-03	ci right 2.228950e-03	k: 941	n:450000
HCN4   450000 perm   176 sec   (2564 perm/sec)   p_kst 2.091111e-03   p_cons 5.002222e-03   p_joint 1.324444e-03

Joint ci ratio: 1.596625e-01	ci left: 1.204202e-03	ci right 1.415204e-03	k: 601	n:460000
Cons ci ratio: 8.151515e-02	ci left: 4.798207e-03	ci right 5.208066e-03	k: 2300	n:460000
KS ci ratio: 1.265174e-01	ci left: 1.950821e-03	ci right 2.216383e-03	k: 957	n:460000
HCN4   460000 perm   181 sec   (2540 perm/sec)   p_kst 2.080435e-03   p_cons 5.000000e-03   p_joint 1.306522e-03

Joint ci ratio: 1.591363e-01	ci left: 1.186751e-03	ci right 1.393944e-03	k: 605	n:470000
Cons ci ratio: 8.085133e-02	ci left: 4.775325e-03	ci right 5.179751e-03	k: 2338	n:470000
KS ci ratio: 1.283454e-01	ci left: 1.853692e-03	ci right 2.109956e-03	k: 930	n:470000
HCN4   470000 perm   187 sec   (2516 perm/sec)   p_kst 1.978723e-03   p_cons 4.974468e-03   p_joint 1.287234e-03

Joint ci ratio: 1.597998e-01	ci left: 1.152024e-03	ci right 1.354073e-03	k: 600	n:480000
Cons ci ratio: 7.976620e-02	ci left: 4.806498e-03	ci right 5.207846e-03	k: 2402	n:480000
KS ci ratio: 1.271898e-01	ci left: 1.849358e-03	ci right 2.102547e-03	k: 947	n:480000
HCN4   480000 perm   193 sec   (2492 perm/sec)   p_kst 1.972917e-03   p_cons 5.004167e-03   p_joint 1.250000e-03

Joint ci ratio: 1.584872e-01	ci left: 1.148108e-03	ci right 1.347660e-03	k: 610	n:490000
Cons ci ratio: 7.891675e-02	ci left: 4.812423e-03	ci right 5.209791e-03	k: 2454	n:490000
KS ci ratio: 1.254799e-01	ci left: 1.863001e-03	ci right 2.114374e-03	k: 973	n:490000
HCN4   490000 perm   198 sec   (2470 perm/sec)   p_kst 1.985714e-03   p_cons 5.008163e-03   p_joint 1.244898e-03

Joint ci ratio: 1.568275e-01	ci left: 1.150121e-03	ci right 1.347731e-03	k: 623	n:500000
Cons ci ratio: 7.834553e-02	ci left: 4.786757e-03	ci right 5.179013e-03	k: 2490	n:500000
KS ci ratio: 1.241485e-01	ci left: 1.866430e-03	ci right 2.115397e-03	k: 994	n:500000
HCN4   500000 perm   204 sec   (2448 perm/sec)   p_kst 1.988000e-03   p_cons 4.980000e-03   p_joint 1.246000e-03

Joint ci ratio: 1.555861e-01	ci left: 1.146410e-03	ci right 1.341679e-03	k: 633	n:510000
Cons ci ratio: 7.769389e-02	ci left: 4.773643e-03	ci right 5.161425e-03	k: 2532	n:510000
KS ci ratio: 1.233462e-01	ci left: 1.854534e-03	ci right 2.100198e-03	k: 1007	n:510000
HCN4   510000 perm   210 sec   (2425 perm/sec)   p_kst 1.974510e-03   p_cons 4.964706e-03   p_joint 1.241176e-03

Joint ci ratio: 1.542539e-01	ci left: 1.144698e-03	ci right 1.337851e-03	k: 644	n:520000
Cons ci ratio: 7.664059e-02	ci left: 4.813864e-03	ci right 5.199375e-03	k: 2602	n:520000
KS ci ratio: 1.222000e-01	ci left: 1.854286e-03	ci right 2.097470e-03	k: 1026	n:520000
HCN4   520000 perm   216 sec   (2403 perm/sec)   p_kst 1.973077e-03   p_cons 5.003846e-03   p_joint 1.238462e-03

Joint ci ratio: 1.557128e-01	ci left: 1.101334e-03	ci right 1.289092e-03	k: 632	n:530000
Cons ci ratio: 7.595813e-02	ci left: 4.810023e-03	ci right 5.191645e-03	k: 2649	n:530000
KS ci ratio: 1.210272e-01	ci left: 1.855888e-03	ci right 2.096778e-03	k: 1046	n:530000
HCN4   530000 perm   222 sec   (2383 perm/sec)   p_kst 1.973585e-03   p_cons 4.998113e-03   p_joint 1.192453e-03

Joint ci ratio: 1.577229e-01	ci left: 1.052469e-03	ci right 1.234432e-03	k: 616	n:540000
Cons ci ratio: 7.519557e-02	ci left: 4.819060e-03	ci right 5.197392e-03	k: 2703	n:540000
KS ci ratio: 1.200567e-01	ci left: 1.852051e-03	ci right 2.090380e-03	k: 1063	n:540000
HCN4   540000 perm   229 sec   (2362 perm/sec)   p_kst 1.968519e-03   p_cons 5.005556e-03   p_joint 1.140741e-03

Joint ci ratio: 1.567107e-01	ci left: 1.047307e-03	ci right 1.227105e-03	k: 624	n:550000
Cons ci ratio: 7.465985e-02	ci left: 4.801019e-03	ci right 5.175133e-03	k: 2742	n:550000
KS ci ratio: 1.193307e-01	ci left: 1.841306e-03	ci right 2.076717e-03	k: 1076	n:550000
HCN4   550000 perm   235 sec   (2341 perm/sec)   p_kst 1.956364e-03   p_cons 4.985455e-03   p_joint 1.134545e-03

Joint ci ratio: 1.551057e-01	ci left: 1.050914e-03	ci right 1.229312e-03	k: 637	n:560000
Cons ci ratio: 7.394864e-02	ci left: 4.808172e-03	ci right 5.179121e-03	k: 2795	n:560000
KS ci ratio: 1.181839e-01	ci left: 1.844811e-03	ci right 2.078246e-03	k: 1097	n:560000
HCN4   560000 perm   241 sec   (2320 perm/sec)   p_kst 1.958929e-03   p_cons 4.991071e-03   p_joint 1.137500e-03

Joint ci ratio: 1.530789e-01	ci left: 1.061151e-03	ci right 1.238718e-03	k: 654	n:570000
Cons ci ratio: 7.323155e-02	ci left: 4.818534e-03	ci right 5.186524e-03	k: 2850	n:570000
KS ci ratio: 1.169126e-01	ci left: 1.853314e-03	ci right 2.085128e-03	k: 1121	n:570000
HCN4   570000 perm   248 sec   (2299 perm/sec)   p_kst 1.966667e-03   p_cons 5.000000e-03   p_joint 1.147368e-03

Joint ci ratio: 1.287859e-01	ci left: 1.492100e-03	ci right 1.699136e-03	k: 924	n:580000
Cons ci ratio: 7.274910e-02	ci left: 4.799776e-03	ci right 5.163816e-03	k: 2888	n:580000
KS ci ratio: 1.157321e-01	ci left: 1.859862e-03	ci right 2.089986e-03	k: 1144	n:580000
HCN4   580000 perm   254 sec   (2279 perm/sec)   p_kst 1.972414e-03   p_cons 4.979310e-03   p_joint 1.593103e-03

Joint ci ratio: 1.276184e-01	ci left: 1.494700e-03	ci right 1.700074e-03	k: 941	n:590000
Cons ci ratio: 7.200460e-02	ci left: 4.818280e-03	ci right 5.179827e-03	k: 2948	n:590000
KS ci ratio: 1.145375e-01	ci left: 1.867846e-03	ci right 2.096410e-03	k: 1168	n:590000
HCN4   590000 perm   261 sec   (2260 perm/sec)   p_kst 1.979661e-03   p_cons 4.996610e-03   p_joint 1.594915e-03

Joint ci ratio: 1.263502e-01	ci left: 1.500449e-03	ci right 1.704412e-03	k: 960	n:600000
Cons ci ratio: 7.150976e-02	ci left: 4.805081e-03	ci right 5.163058e-03	k: 2989	n:600000
KS ci ratio: 1.133316e-01	ci left: 1.877195e-03	ci right 2.104323e-03	k: 1193	n:600000
HCN4   600000 perm   268 sec   (2241 perm/sec)   p_kst 1.988333e-03   p_cons 4.981667e-03   p_joint 1.600000e-03

Joint ci ratio: 1.297070e-01	ci left: 1.398091e-03	ci right 1.593577e-03	k: 911	n:610000
Cons ci ratio: 7.111936e-02	ci left: 4.779441e-03	ci right 5.133483e-03	k: 3022	n:610000
KS ci ratio: 1.124870e-01	ci left: 1.875096e-03	ci right 2.100168e-03	k: 1211	n:610000
HCN4   610000 perm   274 sec   (2222 perm/sec)   p_kst 1.985246e-03   p_cons 4.954098e-03   p_joint 1.493443e-03

Joint ci ratio: 1.343626e-01	ci left: 1.278838e-03	ci right 1.464581e-03	k: 849	n:620000
Cons ci ratio: 7.052685e-02	ci left: 4.783155e-03	ci right 5.134399e-03	k: 3073	n:620000
KS ci ratio: 1.112540e-01	ci left: 1.887183e-03	ci right 2.111060e-03	k: 1238	n:620000
HCN4   620000 perm   281 sec   (2204 perm/sec)   p_kst 1.996774e-03   p_cons 4.956452e-03   p_joint 1.369355e-03

Joint ci ratio: 1.334243e-01	ci left: 1.276949e-03	ci right 1.461019e-03	k: 861	n:630000
Cons ci ratio: 6.996015e-02	ci left: 4.785203e-03	ci right 5.133659e-03	k: 3123	n:630000
KS ci ratio: 1.104108e-01	ci left: 1.886550e-03	ci right 2.108545e-03	k: 1257	n:630000
HCN4   630000 perm   288 sec   (2186 perm/sec)   p_kst 1.995238e-03   p_cons 4.957143e-03   p_joint 1.366667e-03

Joint ci ratio: 1.325053e-01	ci left: 1.275122e-03	ci right 1.457564e-03	k: 873	n:640000
Cons ci ratio: 6.934107e-02	ci left: 4.796411e-03	ci right 5.142468e-03	k: 3179	n:640000
KS ci ratio: 1.096725e-01	ci left: 1.882904e-03	ci right 2.102893e-03	k: 1274	n:640000
HCN4   640000 perm   295 sec   (2168 perm/sec)   p_kst 1.990625e-03   p_cons 4.967188e-03   p_joint 1.364063e-03

Joint ci ratio: 1.310876e-01	ci left: 1.283773e-03	ci right 1.465334e-03	k: 892	n:650000
Cons ci ratio: 6.887731e-02	ci left: 4.787630e-03	ci right 5.130651e-03	k: 3222	n:650000
KS ci ratio: 1.088223e-01	ci left: 1.883865e-03	ci right 2.102150e-03	k: 1294	n:650000
HCN4   650000 perm   302 sec   (2150 perm/sec)   p_kst 1.990769e-03   p_cons 4.956923e-03   p_joint 1.372308e-03

Joint ci ratio: 1.301438e-01	ci left: 1.283375e-03	ci right 1.463472e-03	k: 905	n:660000
Cons ci ratio: 6.833867e-02	ci left: 4.791037e-03	ci right 5.131512e-03	k: 3273	n:660000
KS ci ratio: 1.077864e-01	ci left: 1.892175e-03	ci right 2.109203e-03	k: 1319	n:660000
HCN4   660000 perm   309 sec   (2133 perm/sec)   p_kst 1.998485e-03   p_cons 4.959091e-03   p_joint 1.371212e-03

Joint ci ratio: 1.291497e-01	ci left: 1.284438e-03	ci right 1.463202e-03	k: 919	n:670000
Cons ci ratio: 6.785351e-02	ci left: 4.788484e-03	ci right 5.126266e-03	k: 3320	n:670000
KS ci ratio: 1.071394e-01	ci left: 1.887172e-03	ci right 2.102245e-03	k: 1335	n:670000
HCN4   670000 perm   317 sec   (2115 perm/sec)   p_kst 1.992537e-03   p_cons 4.955224e-03   p_joint 1.371642e-03

Joint ci ratio: 1.283847e-01	ci left: 1.281204e-03	ci right 1.458381e-03	k: 930	n:680000
Cons ci ratio: 6.726822e-02	ci left: 4.801919e-03	ci right 5.137614e-03	k: 3378	n:680000
KS ci ratio: 1.065829e-01	ci left: 1.879457e-03	ci right 2.092469e-03	k: 1349	n:680000
HCN4   680000 perm   324 sec   (2099 perm/sec)   p_kst 1.983824e-03   p_cons 4.967647e-03   p_joint 1.367647e-03

Joint ci ratio: 1.277691e-01	ci left: 1.275261e-03	ci right 1.450707e-03	k: 939	n:690000
Cons ci ratio: 6.689370e-02	ci left: 4.786474e-03	ci right 5.119153e-03	k: 3416	n:690000
KS ci ratio: 1.058020e-01	ci left: 1.880434e-03	ci right 2.091898e-03	k: 1369	n:690000
HCN4   690000 perm   331 sec   (2082 perm/sec)   p_kst 1.984058e-03   p_cons 4.950725e-03   p_joint 1.360870e-03

Joint ci ratio: 1.269614e-01	ci left: 1.273640e-03	ci right 1.447671e-03	k: 951	n:700000
Cons ci ratio: 6.633270e-02	ci left: 4.799573e-03	ci right 5.130258e-03	k: 3474	n:700000
KS ci ratio: 1.051139e-01	ci left: 1.878607e-03	ci right 2.088406e-03	k: 1387	n:700000
HCN4   700000 perm   339 sec   (2066 perm/sec)   p_kst 1.981429e-03   p_cons 4.962857e-03   p_joint 1.358571e-03

Joint ci ratio: 1.259727e-01	ci left: 1.276160e-03	ci right 1.449076e-03	k: 966	n:710000
Cons ci ratio: 6.591696e-02	ci left: 4.792920e-03	ci right 5.120998e-03	k: 3518	n:710000
KS ci ratio: 1.045508e-01	ci left: 1.872720e-03	ci right 2.080673e-03	k: 1402	n:710000
HCN4   710000 perm   346 sec   (2050 perm/sec)   p_kst 1.974648e-03   p_cons 4.954930e-03   p_joint 1.360563e-03

Joint ci ratio: 1.251985e-01	ci left: 1.274578e-03	ci right 1.446140e-03	k: 978	n:720000
Cons ci ratio: 6.544437e-02	ci left: 4.796022e-03	ci right 5.121869e-03	k: 3569	n:720000
KS ci ratio: 1.038135e-01	ci left: 1.873764e-03	ci right 2.080276e-03	k: 1422	n:720000
HCN4   720000 perm   354 sec   (2035 perm/sec)   p_kst 1.975000e-03   p_cons 4.956944e-03   p_joint 1.358333e-03

Joint ci ratio: 1.256502e-01	ci left: 1.247829e-03	ci right 1.416442e-03	k: 971	n:730000
Cons ci ratio: 6.495476e-02	ci left: 4.803091e-03	ci right 5.126884e-03	k: 3623	n:730000
KS ci ratio: 1.027354e-01	ci left: 1.888131e-03	ci right 2.093935e-03	k: 1452	n:730000
HCN4   730000 perm   361 sec   (2020 perm/sec)   p_kst 1.989041e-03   p_cons 4.963014e-03   p_joint 1.330137e-03

Joint ci ratio: 1.265013e-01	ci left: 1.213952e-03	ci right 1.379181e-03	k: 958	n:740000
Cons ci ratio: 6.447598e-02	ci left: 4.809977e-03	ci right 5.131755e-03	k: 3677	n:740000
KS ci ratio: 1.022096e-01	ci left: 1.882366e-03	ci right 2.086429e-03	k: 1467	n:740000
HCN4   740000 perm   369 sec   (2004 perm/sec)   p_kst 1.982432e-03   p_cons 4.968919e-03   p_joint 1.294595e-03

Joint ci ratio: 1.291592e-01	ci left: 1.147426e-03	ci right 1.307133e-03	k: 919	n:750000
Cons ci ratio: 6.408534e-02	ci left: 4.804879e-03	ci right 5.124297e-03	k: 3722	n:750000
KS ci ratio: 1.015888e-01	ci left: 1.880656e-03	ci right 2.083221e-03	k: 1485	n:750000
HCN4   750000 perm   377 sec   (1989 perm/sec)   p_kst 1.980000e-03   p_cons 4.962667e-03   p_joint 1.225333e-03

Joint ci ratio: 1.313956e-01	ci left: 1.092866e-03	ci right 1.247819e-03	k: 888	n:760000
Cons ci ratio: 6.367624e-02	ci left: 4.803806e-03	ci right 5.121038e-03	k: 3770	n:760000
KS ci ratio: 1.008449e-01	ci left: 1.884126e-03	ci right 2.085490e-03	k: 1507	n:760000
HCN4   760000 perm   385 sec   (1975 perm/sec)   p_kst 1.982895e-03   p_cons 4.960526e-03   p_joint 1.168421e-03

Joint ci ratio: 1.308086e-01	ci left: 1.088722e-03	ci right 1.242344e-03	k: 896	n:770000
Cons ci ratio: 6.327487e-02	ci left: 4.802767e-03	ci right 5.117858e-03	k: 3818	n:770000
KS ci ratio: 1.004134e-01	ci left: 1.876114e-03	ci right 2.075714e-03	k: 1520	n:770000
HCN4   770000 perm   393 sec   (1961 perm/sec)   p_kst 1.974026e-03   p_cons 4.958442e-03   p_joint 1.163636e-03

Joint ci ratio: 1.319935e-01	ci left: 1.054924e-03	ci right 1.205231e-03	k: 880	n:780000
Cons ci ratio: 6.283204e-02	ci left: 4.809332e-03	ci right 5.122566e-03	k: 3872	n:780000
KS ci ratio: 9.982461e-02	ci left: 1.874560e-03	ci right 2.072757e-03	k: 1538	n:780000
HCN4   780000 perm   401 sec   (1946 perm/sec)   p_kst 1.971795e-03   p_cons 4.964103e-03   p_joint 1.128205e-03

Joint ci ratio: 1.313246e-01	ci left: 1.052587e-03	ci right 1.201742e-03	k: 889	n:790000
Cons ci ratio: 6.247035e-02	ci left: 4.804524e-03	ci right 5.115579e-03	k: 3917	n:790000
KS ci ratio: 9.947031e-02	ci left: 1.864408e-03	ci right 2.060791e-03	k: 1549	n:790000
HCN4   790000 perm   409 sec   (1932 perm/sec)   p_kst 1.960759e-03   p_cons 4.958228e-03   p_joint 1.125316e-03

Joint ci ratio: 1.308115e-01	ci left: 1.047893e-03	ci right 1.195757e-03	k: 896	n:800000
Cons ci ratio: 6.213060e-02	ci left: 4.797380e-03	ci right 5.106222e-03	k: 3960	n:800000
KS ci ratio: 9.880317e-02	ci left: 1.866703e-03	ci right 2.061932e-03	k: 1570	n:800000
HCN4   800000 perm   417 sec   (1919 perm/sec)   p_kst 1.962500e-03   p_cons 4.950000e-03   p_joint 1.120000e-03

Joint ci ratio: 1.303044e-01	ci left: 1.043316e-03	ci right 1.189919e-03	k: 903	n:810000
Cons ci ratio: 6.175759e-02	ci left: 4.796494e-03	ci right 5.103359e-03	k: 4008	n:810000
KS ci ratio: 9.842843e-02	ci left: 1.858106e-03	ci right 2.051656e-03	k: 1582	n:810000
HCN4   810000 perm   425 sec   (1905 perm/sec)   p_kst 1.953086e-03   p_cons 4.948148e-03   p_joint 1.114815e-03

Joint ci ratio: 1.319222e-01	ci left: 1.004642e-03	ci right 1.147701e-03	k: 881	n:820000
Cons ci ratio: 6.128505e-02	ci left: 4.812448e-03	ci right 5.117894e-03	k: 4070	n:820000
KS ci ratio: 9.787364e-02	ci left: 1.856858e-03	ci right 2.049126e-03	k: 1600	n:820000
HCN4   820000 perm   433 sec   (1893 perm/sec)   p_kst 1.951220e-03   p_cons 4.963415e-03   p_joint 1.074390e-03

Joint ci ratio: 1.314761e-01	ci left: 9.995281e-04	ci right 1.141340e-03	k: 887	n:830000
Cons ci ratio: 6.088243e-02	ci left: 4.818534e-03	ci right 5.122286e-03	k: 4124	n:830000
KS ci ratio: 9.738842e-02	ci left: 1.853293e-03	ci right 2.044186e-03	k: 1616	n:830000
HCN4   830000 perm   441 sec   (1881 perm/sec)   p_kst 1.946988e-03   p_cons 4.968675e-03   p_joint 1.068675e-03

Joint ci ratio: 1.305240e-01	ci left: 1.002598e-03	ci right 1.143736e-03	k: 900	n:840000
Cons ci ratio: 6.049491e-02	ci left: 4.823308e-03	ci right 5.125359e-03	k: 4177	n:840000
KS ci ratio: 9.688063e-02	ci left: 1.850976e-03	ci right 2.040580e-03	k: 1633	n:840000
HCN4   840000 perm   450 sec   (1868 perm/sec)   p_kst 1.944048e-03   p_cons 4.972619e-03   p_joint 1.071429e-03

Joint ci ratio: 1.298771e-01	ci left: 1.001046e-03	ci right 1.141213e-03	k: 909	n:850000
Cons ci ratio: 6.010757e-02	ci left: 4.829136e-03	ci right 5.129547e-03	k: 4231	n:850000
KS ci ratio: 9.640996e-02	ci left: 1.847568e-03	ci right 2.035852e-03	k: 1649	n:850000
HCN4   850000 perm   458 sec   (1854 perm/sec)   p_kst 1.940000e-03   p_cons 4.977647e-03   p_joint 1.069412e-03

Joint ci ratio: 1.291694e-01	ci left: 1.000657e-03	ci right 1.139948e-03	k: 919	n:860000
Cons ci ratio: 5.975560e-02	ci left: 4.830251e-03	ci right 5.128912e-03	k: 4281	n:860000
KS ci ratio: 9.574476e-02	ci left: 1.852187e-03	ci right 2.039565e-03	k: 1672	n:860000
HCN4   860000 perm   467 sec   (1841 perm/sec)   p_kst 1.944186e-03   p_cons 4.977907e-03   p_joint 1.068605e-03

Joint ci ratio: 1.285423e-01	ci left: 9.991667e-04	ci right 1.137523e-03	k: 928	n:870000
Cons ci ratio: 5.940974e-02	ci left: 4.831346e-03	ci right 5.128286e-03	k: 4331	n:870000
KS ci ratio: 9.529037e-02	ci left: 1.848849e-03	ci right 2.034952e-03	k: 1688	n:870000
HCN4   870000 perm   476 sec   (1828 perm/sec)   p_kst 1.940230e-03   p_cons 4.978161e-03   p_joint 1.066667e-03

Joint ci ratio: 1.277199e-01	ci left: 1.001012e-03	ci right 1.138670e-03	k: 940	n:880000
Cons ci ratio: 5.915127e-02	ci left: 4.818985e-03	ci right 5.113833e-03	k: 4369	n:880000
KS ci ratio: 9.478671e-02	ci left: 1.847807e-03	ci right 2.032768e-03	k: 1706	n:880000
HCN4   880000 perm   485 sec   (1814 perm/sec)   p_kst 1.938636e-03   p_cons 4.964773e-03   p_joint 1.068182e-03

Joint ci ratio: 1.269799e-01	ci left: 1.001730e-03	ci right 1.138629e-03	k: 951	n:890000
Cons ci ratio: 5.879569e-02	ci left: 4.823512e-03	ci right 5.116803e-03	k: 4422	n:890000
KS ci ratio: 9.420890e-02	ci left: 1.850083e-03	ci right 2.034081e-03	k: 1727	n:890000
HCN4   890000 perm   494 sec   (1801 perm/sec)   p_kst 1.940449e-03   p_cons 4.968539e-03   p_joint 1.068539e-03

Joint ci ratio: 1.263840e-01	ci left: 1.000283e-03	ci right 1.136294e-03	k: 960	n:900000
Cons ci ratio: 5.841367e-02	ci left: 4.833418e-03	ci right 5.125337e-03	k: 4480	n:900000
KS ci ratio: 9.369522e-02	ci left: 1.850142e-03	ci right 2.033087e-03	k: 1746	n:900000
HCN4   900000 perm   503 sec   (1788 perm/sec)   p_kst 1.940000e-03   p_cons 4.977778e-03   p_joint 1.066667e-03

Joint ci ratio: 1.257316e-01	ci left: 9.999334e-04	ci right 1.135143e-03	k: 970	n:910000
Cons ci ratio: 5.805829e-02	ci left: 4.839864e-03	ci right 5.130334e-03	k: 4535	n:910000
KS ci ratio: 9.321631e-02	ci left: 1.849129e-03	ci right 2.030988e-03	k: 1764	n:910000
HCN4   910000 perm   513 sec   (1775 perm/sec)   p_kst 1.938462e-03   p_cons 4.983516e-03   p_joint 1.065934e-03

Joint ci ratio: 1.252170e-01	ci left: 9.974872e-04	ci right 1.131773e-03	k: 978	n:920000
Cons ci ratio: 5.778525e-02	ci left: 4.833318e-03	ci right 5.121986e-03	k: 4578	n:920000
KS ci ratio: 9.271861e-02	ci left: 1.849201e-03	ci right 2.030044e-03	k: 1783	n:920000
HCN4   920000 perm   522 sec   (1763 perm/sec)   p_kst 1.938043e-03   p_cons 4.976087e-03   p_joint 1.063043e-03

Joint ci ratio: 1.244565e-01	ci left: 9.992619e-04	ci right 1.132909e-03	k: 990	n:930000
Cons ci ratio: 5.744115e-02	ci left: 4.839635e-03	ci right 5.126902e-03	k: 4633	n:930000
KS ci ratio: 9.228010e-02	ci left: 1.847174e-03	ci right 2.026918e-03	k: 1800	n:930000
HCN4   930000 perm   531 sec   (1751 perm/sec)   p_kst 1.935484e-03   p_cons 4.981720e-03   p_joint 1.064516e-03

Joint ci ratio: 1.241441e-01	ci left: 9.937850e-04	ci right 1.126342e-03	k: 995	n:940000
Cons ci ratio: 5.718898e-02	ci left: 4.831141e-03	ci right 5.116603e-03	k: 4674	n:940000
KS ci ratio: 9.189841e-02	ci left: 1.843113e-03	ci right 2.021680e-03	k: 1815	n:940000
HCN4   940000 perm   540 sec   (1740 perm/sec)   p_kst 1.930851e-03   p_cons 4.972340e-03   p_joint 1.058511e-03

Joint ci ratio: 1.308962e-01	ci left: 8.814131e-04	ci right 1.005873e-03	k: 895	n:950000
Cons ci ratio: 5.687349e-02	ci left: 4.834244e-03	ci right 5.118261e-03	k: 4726	n:950000
KS ci ratio: 9.149639e-02	ci left: 1.840168e-03	ci right 2.017628e-03	k: 1831	n:950000
HCN4   950000 perm   550 sec   (1728 perm/sec)   p_kst 1.927368e-03   p_cons 4.974737e-03   p_joint 9.421053e-04

Joint ci ratio: 1.303158e-01	ci left: 8.802927e-04	ci right 1.004000e-03	k: 903	n:960000
Cons ci ratio: 5.656911e-02	ci left: 4.836259e-03	ci right 5.118824e-03	k: 4777	n:960000
KS ci ratio: 9.087814e-02	ci left: 1.846447e-03	ci right 2.023246e-03	k: 1856	n:960000
HCN4   960000 perm   559 sec   (1717 perm/sec)   p_kst 1.933333e-03   p_cons 4.976042e-03   p_joint 9.406250e-04

Joint ci ratio: 1.352748e-01	ci left: 8.064305e-04	ci right 9.244179e-04	k: 838	n:970000
Cons ci ratio: 5.624615e-02	ci left: 4.842302e-03	ci right 5.123553e-03	k: 4832	n:970000
KS ci ratio: 9.051352e-02	ci left: 1.842525e-03	ci right 2.018203e-03	k: 1871	n:970000
HCN4   970000 perm   569 sec   (1706 perm/sec)   p_kst 1.928866e-03   p_cons 4.981443e-03   p_joint 8.639175e-04

Joint ci ratio: 1.342385e-01	ci left: 8.110199e-04	ci right 9.286971e-04	k: 851	n:980000
Cons ci ratio: 5.596320e-02	ci left: 4.842189e-03	ci right 5.121973e-03	k: 4881	n:980000
KS ci ratio: 9.003381e-02	ci left: 1.843671e-03	ci right 2.018477e-03	k: 1891	n:980000
HCN4   980000 perm   578 sec   (1695 perm/sec)   p_kst 1.929592e-03   p_cons 4.980612e-03   p_joint 8.683673e-04

Joint ci ratio: 1.333028e-01	ci left: 8.145434e-04	ci right 9.318428e-04	k: 863	n:990000
Cons ci ratio: 5.570718e-02	ci left: 4.838098e-03	ci right 5.116326e-03	k: 4926	n:990000
KS ci ratio: 8.942119e-02	ci left: 1.850722e-03	ci right 2.024940e-03	k: 1917	n:990000
HCN4   990000 perm   588 sec   (1684 perm/sec)   p_kst 1.936364e-03   p_cons 4.975758e-03   p_joint 8.717172e-04

Joint ci ratio: 1.323109e-01	ci left: 8.189662e-04	ci right 9.359559e-04	k: 876	n:1000000
Cons ci ratio: 5.545465e-02	ci left: 4.834091e-03	ci right 5.110788e-03	k: 4971	n:1000000
KS ci ratio: 8.909685e-02	ci left: 1.845902e-03	ci right 2.019004e-03	k: 1931	n:1000000
HCN4   1000000 perm   598 sec   (1674 perm/sec)   p_kst 1.931000e-03   p_cons 4.971000e-03   p_joint 8.760000e-04

Joint ci ratio: 1.316371e-01	ci left: 8.194743e-04	ci right 9.358939e-04	k: 885	n:1010000
Cons ci ratio: 5.513928e-02	ci left: 4.841885e-03	ci right 5.117401e-03	k: 5028	n:1010000
KS ci ratio: 8.870753e-02	ci left: 1.844083e-03	ci right 2.016219e-03	k: 1948	n:1010000
HCN4   1010000 perm   607 sec   (1663 perm/sec)   p_kst 1.928713e-03   p_cons 4.978218e-03   p_joint 8.762376e-04

Joint ci ratio: 1.310469e-01	ci left: 8.190257e-04	ci right 9.348192e-04	k: 893	n:1020000
Cons ci ratio: 5.489436e-02	ci left: 4.837926e-03	ci right 5.111956e-03	k: 5073	n:1020000
KS ci ratio: 8.816615e-02	ci left: 1.849013e-03	ci right 2.020502e-03	k: 1972	n:1020000
HCN4   1020000 perm   617 sec   (1652 perm/sec)   p_kst 1.933333e-03   p_cons 4.973529e-03   p_joint 8.754902e-04

Joint ci ratio: 1.303922e-01	ci left: 8.195261e-04	ci right 9.347667e-04	k: 902	n:1030000
Cons ci ratio: 5.459910e-02	ci left: 4.843623e-03	ci right 5.116453e-03	k: 5128	n:1030000
KS ci ratio: 8.774469e-02	ci left: 1.849102e-03	ci right 2.019738e-03	k: 1991	n:1030000
HCN4   1030000 perm   627 sec   (1642 perm/sec)   p_kst 1.933010e-03   p_cons 4.978641e-03   p_joint 8.757282e-04

Joint ci ratio: 1.292517e-01	ci left: 8.265312e-04	ci right 9.416624e-04	k: 918	n:1040000
Cons ci ratio: 5.437184e-02	ci left: 4.837832e-03	ci right 5.109167e-03	k: 5171	n:1040000
KS ci ratio: 8.713407e-02	ci left: 1.857657e-03	ci right 2.027828e-03	k: 2019	n:1040000
HCN4   1040000 perm   638 sec   (1631 perm/sec)   p_kst 1.941346e-03   p_cons 4.972115e-03   p_joint 8.826923e-04

Joint ci ratio: 1.288320e-01	ci left: 8.241893e-04	ci right 9.385929e-04	k: 924	n:1050000
Cons ci ratio: 5.411611e-02	ci left: 4.837792e-03	ci right 5.107807e-03	k: 5220	n:1050000
KS ci ratio: 8.685530e-02	ci left: 1.852076e-03	ci right 2.021166e-03	k: 2032	n:1050000
HCN4   1050000 perm   648 sec   (1621 perm/sec)   p_kst 1.935238e-03   p_cons 4.971429e-03   p_joint 8.800000e-04

Joint ci ratio: 1.281411e-01	ci left: 8.255447e-04	ci right 9.394752e-04	k: 934	n:1060000
Cons ci ratio: 5.385369e-02	ci left: 4.839616e-03	ci right 5.108383e-03	k: 5271	n:1060000
KS ci ratio: 8.636797e-02	ci left: 1.855832e-03	ci right 2.024266e-03	k: 2055	n:1060000
HCN4   1060000 perm   659 sec   (1609 perm/sec)   p_kst 1.938679e-03   p_cons 4.972642e-03   p_joint 8.811321e-04

Joint ci ratio: 1.289726e-01	ci left: 8.069745e-04	ci right 9.191202e-04	k: 922	n:1070000
Cons ci ratio: 5.362037e-02	ci left: 4.836799e-03	ci right 5.104210e-03	k: 5317	n:1070000
KS ci ratio: 8.590946e-02	ci left: 1.858606e-03	ci right 2.026351e-03	k: 2077	n:1070000
HCN4   1070000 perm   669 sec   (1599 perm/sec)   p_kst 1.941121e-03   p_cons 4.969159e-03   p_joint 8.616822e-04

Joint ci ratio: 1.285556e-01	ci left: 8.048791e-04	ci right 9.163443e-04	k: 928	n:1080000
Cons ci ratio: 5.332016e-02	ci left: 4.846827e-03	ci right 5.113246e-03	k: 5377	n:1080000
KS ci ratio: 8.551939e-02	ci left: 1.858612e-03	ci right 2.025558e-03	k: 2096	n:1080000
HCN4   1080000 perm   680 sec   (1589 perm/sec)   p_kst 1.940741e-03   p_cons 4.978704e-03   p_joint 8.592593e-04

Joint ci ratio: 1.274623e-01	ci left: 8.117039e-04	ci right 9.230860e-04	k: 944	n:1090000
Cons ci ratio: 5.300535e-02	ci left: 4.860297e-03	ci right 5.125830e-03	k: 5441	n:1090000
KS ci ratio: 8.505409e-02	ci left: 1.862212e-03	ci right 2.028526e-03	k: 2119	n:1090000
HCN4   1090000 perm   690 sec   (1580 perm/sec)   p_kst 1.944037e-03   p_cons 4.991743e-03   p_joint 8.660550e-04

Joint ci ratio: 1.271936e-01	ci left: 8.078452e-04	ci right 9.184466e-04	k: 948	n:1100000
Cons ci ratio: 5.283123e-02	ci left: 4.848406e-03	ci right 5.112393e-03	k: 5477	n:1100000
KS ci ratio: 8.459629e-02	ci left: 1.865748e-03	ci right 2.031437e-03	k: 2142	n:1100000
HCN4   1100000 perm   701 sec   (1570 perm/sec)   p_kst 1.947273e-03   p_cons 4.979091e-03   p_joint 8.618182e-04

Joint ci ratio: 1.266609e-01	ci left: 8.075457e-04	ci right 9.176082e-04	k: 956	n:1110000
Cons ci ratio: 5.258220e-02	ci left: 4.850956e-03	ci right 5.113799e-03	k: 5529	n:1110000
KS ci ratio: 8.426283e-02	ci left: 1.863932e-03	ci right 2.028775e-03	k: 2159	n:1110000
HCN4   1110000 perm   711 sec   (1561 perm/sec)   p_kst 1.945045e-03   p_cons 4.981081e-03   p_joint 8.612613e-04

Joint ci ratio: 1.261348e-01	ci left: 8.072525e-04	ci right 9.167839e-04	k: 964	n:1120000
Cons ci ratio: 5.236495e-02	ci left: 4.848176e-03	ci right 5.109751e-03	k: 5575	n:1120000
KS ci ratio: 8.395260e-02	ci left: 1.861275e-03	ci right 2.025247e-03	k: 2175	n:1120000
HCN4   1120000 perm   721 sec   (1553 perm/sec)   p_kst 1.941964e-03   p_cons 4.977679e-03   p_joint 8.607143e-04

Joint ci ratio: 1.256799e-01	ci left: 8.061082e-04	ci right 9.150605e-04	k: 971	n:1130000
Cons ci ratio: 5.215503e-02	ci left: 4.844574e-03	ci right 5.104876e-03	k: 5620	n:1130000
KS ci ratio: 8.368403e-02	ci left: 1.856933e-03	ci right 2.019974e-03	k: 2189	n:1130000
HCN4   1130000 perm   732 sec   (1545 perm/sec)   p_kst 1.937168e-03   p_cons 4.973451e-03   p_joint 8.592920e-04

Joint ci ratio: 1.251659e-01	ci left: 8.058344e-04	ci right 9.142713e-04	k: 979	n:1140000
Cons ci ratio: 5.194762e-02	ci left: 4.841038e-03	ci right 5.100084e-03	k: 5665	n:1140000
KS ci ratio: 8.343698e-02	ci left: 1.851809e-03	ci right 2.013896e-03	k: 2202	n:1140000
HCN4   1140000 perm   742 sec   (1536 perm/sec)   p_kst 1.931579e-03   p_cons 4.969298e-03   p_joint 8.587719e-04

Joint ci ratio: 1.247846e-01	ci left: 8.038814e-04	ci right 9.117015e-04	k: 985	n:1150000
Cons ci ratio: 5.173811e-02	ci left: 4.838423e-03	ci right 5.096254e-03	k: 5711	n:1150000
KS ci ratio: 8.300468e-02	ci left: 1.855290e-03	ci right 2.016800e-03	k: 2225	n:1150000
HCN4   1150000 perm   753 sec   (1527 perm/sec)   p_kst 1.934783e-03   p_cons 4.966087e-03   p_joint 8.565217e-04

Joint ci ratio: 1.247218e-01	ci left: 7.977864e-04	ci right 9.047312e-04	k: 986	n:1160000
Cons ci ratio: 5.153561e-02	ci left: 4.835005e-03	ci right 5.091615e-03	k: 5756	n:1160000
KS ci ratio: 8.272657e-02	ci left: 1.851959e-03	ci right 2.012613e-03	k: 2240	n:1160000
HCN4   1160000 perm   764 sec   (1519 perm/sec)   p_kst 1.931034e-03   p_cons 4.962069e-03   p_joint 8.500000e-04

Joint ci ratio: 1.244073e-01	ci left: 7.951080e-04	ci right 9.014051e-04	k: 991	n:1170000
Cons ci ratio: 5.130437e-02	ci left: 4.837553e-03	ci right 5.093112e-03	k: 5808	n:1170000
KS ci ratio: 8.241465e-02	ci left: 1.850360e-03	ci right 2.010241e-03	k: 2257	n:1170000
HCN4   1170000 perm   775 sec   (1510 perm/sec)   p_kst 1.929060e-03   p_cons 4.964103e-03   p_joint 8.470085e-04

Joint ci ratio: 1.239707e-01	ci left: 7.941177e-04	ci right 8.998825e-04	k: 998	n:1180000
Cons ci ratio: 5.109375e-02	ci left: 4.836714e-03	ci right 5.091149e-03	k: 5856	n:1180000
KS ci ratio: 8.219678e-02	ci left: 1.844639e-03	ci right 2.003584e-03	k: 2269	n:1180000
HCN4   1180000 perm   786 sec   (1501 perm/sec)   p_kst 1.922881e-03   p_cons 4.962712e-03   p_joint 8.457627e-04

Joint ci ratio: 1.238472e-01	ci left: 7.890729e-04	ci right 8.940534e-04	k: 1000	n:1190000
Cons ci ratio: 5.086406e-02	ci left: 4.840040e-03	ci right 5.093471e-03	k: 5909	n:1190000
KS ci ratio: 8.203467e-02	ci left: 1.836545e-03	ci right 1.994466e-03	k: 2278	n:1190000
HCN4   1190000 perm   797 sec   (1493 perm/sec)   p_kst 1.914286e-03   p_cons 4.965546e-03   p_joint 8.403361e-04

Joint ci ratio: 1.231721e-01	ci left: 7.913808e-04	ci right 8.960526e-04	k: 1011	n:1200000
Cons ci ratio: 5.066734e-02	ci left: 4.837553e-03	ci right 5.089846e-03	k: 5955	n:1200000
KS ci ratio: 8.165925e-02	ci left: 1.838383e-03	ci right 1.995704e-03	k: 2299	n:1200000
HCN4   1200000 perm   809 sec   (1484 perm/sec)   p_kst 1.915833e-03   p_cons 4.962500e-03   p_joint 8.425000e-04

Joint ci ratio: 1.235396e-01	ci left: 7.800345e-04	ci right 8.835360e-04	k: 1005	n:1210000
Cons ci ratio: 5.043068e-02	ci left: 4.843269e-03	ci right 5.094646e-03	k: 6011	n:1210000
KS ci ratio: 8.132404e-02	ci left: 1.838572e-03	ci right 1.995233e-03	k: 2318	n:1210000
HCN4   1210000 perm   820 sec   (1476 perm/sec)   p_kst 1.915702e-03   p_cons 4.967769e-03   p_joint 8.305785e-04

Joint ci ratio: 1.232950e-01	ci left: 7.768181e-04	ci right 8.796738e-04	k: 1009	n:1220000
Cons ci ratio: 5.023476e-02	ci left: 4.841610e-03	ci right 5.091897e-03	k: 6058	n:1220000
KS ci ratio: 8.120198e-02	ci left: 1.829122e-03	ci right 1.984733e-03	k: 2325	n:1220000
HCN4   1220000 perm   831 sec   (1469 perm/sec)   p_kst 1.905738e-03   p_cons 4.965574e-03   p_joint 8.270492e-04

Joint ci ratio: 1.270655e-01	ci left: 7.240355e-04	ci right 8.230551e-04	k: 950	n:1230000
Cons ci ratio: 5.004934e-02	ci left: 4.838374e-03	ci right 5.087543e-03	k: 6103	n:1230000
KS ci ratio: 8.092423e-02	ci left: 1.826996e-03	ci right 1.981869e-03	k: 2341	n:1230000
HCN4   1230000 perm   842 sec   (1460 perm/sec)   p_kst 1.903252e-03   p_cons 4.961789e-03   p_joint 7.723577e-04

Joint ci ratio: 1.267329e-01	ci left: 7.221007e-04	ci right 8.205778e-04	k: 955	n:1240000
Cons ci ratio: 4.983746e-02	ci left: 4.840767e-03	ci right 5.088974e-03	k: 6155	n:1240000
KS ci ratio: 8.073512e-02	ci left: 1.820953e-03	ci right 1.974936e-03	k: 2352	n:1240000
HCN4   1240000 perm   854 sec   (1452 perm/sec)   p_kst 1.896774e-03   p_cons 4.963710e-03   p_joint 7.701613e-04

Joint ci ratio: 1.278082e-01	ci left: 7.039310e-04	ci right 8.008064e-04	k: 939	n:1250000
Cons ci ratio: 4.965236e-02	ci left: 4.838383e-03	ci right 5.085520e-03	k: 6201	n:1250000
KS ci ratio: 8.030942e-02	ci left: 1.825983e-03	ci right 1.979539e-03	k: 2377	n:1250000
HCN4   1250000 perm   866 sec   (1443 perm/sec)   p_kst 1.901600e-03   p_cons 4.960800e-03   p_joint 7.512000e-04

Joint ci ratio: 1.274697e-01	ci left: 7.021858e-04	ci right 7.985457e-04	k: 944	n:1260000
Cons ci ratio: 4.946136e-02	ci left: 4.837606e-03	ci right 5.083726e-03	k: 6249	n:1260000
KS ci ratio: 7.997378e-02	ci left: 1.827046e-03	ci right 1.980020e-03	k: 2397	n:1260000
HCN4   1260000 perm   878 sec   (1435 perm/sec)   p_kst 1.902381e-03   p_cons 4.959524e-03   p_joint 7.492063e-04

Joint ci ratio: 1.272681e-01	ci left: 6.989436e-04	ci right 7.946955e-04	k: 947	n:1270000
Cons ci ratio: 4.928042e-02	ci left: 4.835288e-03	ci right 5.080364e-03	k: 6295	n:1270000
KS ci ratio: 7.980784e-02	ci left: 1.820377e-03	ci right 1.972461e-03	k: 2407	n:1270000
HCN4   1270000 perm   890 sec   (1427 perm/sec)   p_kst 1.895276e-03   p_cons 4.956693e-03   p_joint 7.456693e-04

Joint ci ratio: 1.270006e-01	ci left: 6.965087e-04	ci right 7.917113e-04	k: 951	n:1280000
Cons ci ratio: 4.907811e-02	ci left: 4.837638e-03	ci right 5.081798e-03	k: 6347	n:1280000
KS ci ratio: 7.956054e-02	ci left: 1.817640e-03	ci right 1.969003e-03	k: 2422	n:1280000
HCN4   1280000 perm   901 sec   (1420 perm/sec)   p_kst 1.892187e-03   p_cons 4.958594e-03   p_joint 7.429688e-04

Joint ci ratio: 1.262075e-01	ci left: 7.001172e-04	ci right 7.951707e-04	k: 963	n:1290000
Cons ci ratio: 4.891670e-02	ci left: 4.832296e-03	ci right 5.075362e-03	k: 6389	n:1290000
KS ci ratio: 7.905606e-02	ci left: 1.827105e-03	ci right 1.978247e-03	k: 2453	n:1290000
HCN4   1290000 perm   913 sec   (1412 perm/sec)   p_kst 1.901550e-03   p_cons 4.952713e-03   p_joint 7.465116e-04

Joint ci ratio: 1.271351e-01	ci left: 6.843033e-04	ci right 7.779441e-04	k: 949	n:1300000
Cons ci ratio: 4.868087e-02	ci left: 4.842235e-03	ci right 5.084594e-03	k: 6451	n:1300000
KS ci ratio: 7.871989e-02	ci left: 1.828885e-03	ci right 1.979502e-03	k: 2474	n:1300000
HCN4   1300000 perm   925 sec   (1405 perm/sec)   p_kst 1.903077e-03   p_cons 4.962308e-03   p_joint 7.300000e-04

Joint ci ratio: 1.264052e-01	ci left: 6.872104e-04	ci right 7.806687e-04	k: 960	n:1310000
Cons ci ratio: 4.847834e-02	ci left: 4.845992e-03	ci right 5.087502e-03	k: 6505	n:1310000
KS ci ratio: 7.849834e-02	ci left: 1.825401e-03	ci right 1.975288e-03	k: 2488	n:1310000
HCN4   1310000 perm   937 sec   (1397 perm/sec)   p_kst 1.899237e-03   p_cons 4.965649e-03   p_joint 7.328244e-04

Joint ci ratio: 1.258823e-01	ci left: 6.878736e-04	ci right 7.810062e-04	k: 968	n:1320000
Cons ci ratio: 4.825615e-02	ci left: 4.854186e-03	ci right 5.094964e-03	k: 6565	n:1320000
KS ci ratio: 7.813803e-02	ci left: 1.828655e-03	ci right 1.978089e-03	k: 2511	n:1320000
HCN4   1320000 perm   950 sec   (1390 perm/sec)   p_kst 1.902273e-03   p_cons 4.973485e-03   p_joint 7.333333e-04

Joint ci ratio: 1.257528e-01	ci left: 6.841580e-04	ci right 7.766852e-04	k: 970	n:1330000
Cons ci ratio: 4.811000e-02	ci left: 4.847400e-03	ci right 5.087094e-03	k: 6605	n:1330000
KS ci ratio: 7.789045e-02	ci left: 1.826701e-03	ci right 1.975481e-03	k: 2527	n:1330000
HCN4   1330000 perm   962 sec   (1382 perm/sec)   p_kst 1.900000e-03   p_cons 4.966165e-03   p_joint 7.293233e-04

Joint ci ratio: 1.255592e-01	ci left: 6.812207e-04	ci right 7.731982e-04	k: 973	n:1340000
Cons ci ratio: 4.791449e-02	ci left: 4.851041e-03	ci right 5.089913e-03	k: 6659	n:1340000
KS ci ratio: 7.770645e-02	ci left: 1.821850e-03	ci right 1.969868e-03	k: 2539	n:1340000
HCN4   1340000 perm   975 sec   (1375 perm/sec)   p_kst 1.894776e-03   p_cons 4.969403e-03   p_joint 7.261194e-04

Joint ci ratio: 1.249830e-01	ci left: 6.826324e-04	ci right 7.743463e-04	k: 982	n:1350000
Cons ci ratio: 4.774278e-02	ci left: 4.850237e-03	ci right 5.088190e-03	k: 6707	n:1350000
KS ci ratio: 7.741743e-02	ci left: 1.822156e-03	ci right 1.969624e-03	k: 2558	n:1350000
HCN4   1350000 perm   987 sec   (1368 perm/sec)   p_kst 1.894815e-03   p_cons 4.968148e-03   p_joint 7.274074e-04

Joint ci ratio: 1.242268e-01	ci left: 6.861616e-04	ci right 7.777509e-04	k: 994	n:1360000
Cons ci ratio: 4.754463e-02	ci left: 4.855260e-03	ci right 5.092444e-03	k: 6763	n:1360000
KS ci ratio: 7.714661e-02	ci left: 1.821737e-03	ci right 1.968632e-03	k: 2576	n:1360000
HCN4   1360000 perm   999 sec   (1361 perm/sec)   p_kst 1.894118e-03   p_cons 4.972794e-03   p_joint 7.308824e-04

Joint ci ratio: 1.233006e-01	ci left: 6.917632e-04	ci right 7.833614e-04	k: 1009	n:1370000
Cons ci ratio: 4.735939e-02	ci left: 4.858048e-03	ci right 5.094418e-03	k: 6816	n:1370000
KS ci ratio: 7.664225e-02	ci left: 1.832781e-03	ci right 1.979557e-03	k: 2610	n:1370000
HCN4   1370000 perm   1012 sec   (1354 perm/sec)   p_kst 1.905109e-03   p_cons 4.975182e-03   p_joint 7.364964e-04

Joint ci ratio: 1.226945e-01	ci left: 6.937739e-04	ci right 7.851541e-04	k: 1019	n:1380000
Cons ci ratio: 4.720047e-02	ci left: 4.855784e-03	ci right 5.091229e-03	k: 6862	n:1380000
KS ci ratio: 7.627778e-02	ci left: 1.837269e-03	ci right 1.983674e-03	k: 2635	n:1380000
HCN4   1380000 perm   1024 sec   (1347 perm/sec)   p_kst 1.909420e-03   p_cons 4.972464e-03   p_joint 7.384058e-04

Joint ci ratio: 1.258846e-01	ci left: 6.532317e-04	ci right 7.416759e-04	k: 968	n:1390000
Cons ci ratio: 4.699531e-02	ci left: 4.863507e-03	ci right 5.098275e-03	k: 6922	n:1390000
KS ci ratio: 7.594706e-02	ci left: 1.840284e-03	ci right 1.986265e-03	k: 2658	n:1390000
HCN4   1390000 perm   1037 sec   (1340 perm/sec)   p_kst 1.912230e-03   p_cons 4.979856e-03   p_joint 6.964029e-04

Joint ci ratio: 1.255612e-01	ci left: 6.520249e-04	ci right 7.400619e-04	k: 973	n:1400000
Cons ci ratio: 4.681977e-02	ci left: 4.865475e-03	ci right 5.099437e-03	k: 6974	n:1400000
KS ci ratio: 7.570549e-02	ci left: 1.839051e-03	ci right 1.984450e-03	k: 2675	n:1400000
HCN4   1400000 perm   1050 sec   (1334 perm/sec)   p_kst 1.910714e-03   p_cons 4.981429e-03   p_joint 6.950000e-04

Joint ci ratio: 1.253043e-01	ci left: 6.501484e-04	ci right 7.377391e-04	k: 977	n:1410000
Cons ci ratio: 4.664284e-02	ci left: 4.868118e-03	ci right 5.101298e-03	k: 7027	n:1410000
KS ci ratio: 7.538213e-02	ci left: 1.842012e-03	ci right 1.986996e-03	k: 2698	n:1410000
HCN4   1410000 perm   1062 sec   (1327 perm/sec)   p_kst 1.913475e-03   p_cons 4.983688e-03   p_joint 6.929078e-04

Joint ci ratio: 1.283617e-01	ci left: 6.142025e-04	ci right 6.991232e-04	k: 931	n:1420000
Cons ci ratio: 4.643825e-02	ci left: 4.876990e-03	ci right 5.109543e-03	k: 7089	n:1420000
KS ci ratio: 7.521530e-02	ci left: 1.837332e-03	ci right 1.981613e-03	k: 2710	n:1420000
HCN4   1420000 perm   1075 sec   (1321 perm/sec)   p_kst 1.908451e-03   p_cons 4.992254e-03   p_joint 6.556338e-04

Joint ci ratio: 1.276784e-01	ci left: 6.166764e-04	ci right 7.014510e-04	k: 941	n:1430000
Cons ci ratio: 4.625909e-02	ci left: 4.880901e-03	ci right 5.112719e-03	k: 7144	n:1430000
KS ci ratio: 7.493936e-02	ci left: 1.838207e-03	ci right 1.982004e-03	k: 2730	n:1430000
HCN4   1430000 perm   1088 sec   (1314 perm/sec)   p_kst 1.909091e-03   p_cons 4.995804e-03   p_joint 6.580420e-04

Joint ci ratio: 1.274083e-01	ci left: 6.150831e-04	ci right 6.994462e-04	k: 945	n:1440000
Cons ci ratio: 4.609164e-02	ci left: 4.882700e-03	ci right 5.113742e-03	k: 7196	n:1440000
KS ci ratio: 7.470725e-02	ci left: 1.837026e-03	ci right 1.980267e-03	k: 2747	n:1440000
HCN4   1440000 perm   1101 sec   (1308 perm/sec)   p_kst 1.907639e-03   p_cons 4.997222e-03   p_joint 6.562500e-04

Joint ci ratio: 1.276790e-01	ci left: 6.081704e-04	ci right 6.917760e-04	k: 941	n:1450000
Cons ci ratio: 4.592599e-02	ci left: 4.884476e-03	ci right 5.114749e-03	k: 7248	n:1450000
KS ci ratio: 7.453132e-02	ci left: 1.833155e-03	ci right 1.975743e-03	k: 2760	n:1450000
HCN4   1450000 perm   1113 sec   (1302 perm/sec)   p_kst 1.903448e-03   p_cons 4.998621e-03   p_joint 6.489655e-04

Joint ci ratio: 1.276115e-01	ci left: 6.046678e-04	ci right 6.877447e-04	k: 942	n:1460000
Cons ci ratio: 4.578103e-02	ci left: 4.882166e-03	ci right 5.111585e-03	k: 7294	n:1460000
KS ci ratio: 7.434321e-02	ci left: 1.830010e-03	ci right 1.971978e-03	k: 2774	n:1460000
HCN4   1460000 perm   1126 sec   (1297 perm/sec)   p_kst 1.900000e-03   p_cons 4.995890e-03   p_joint 6.452055e-04

Joint ci ratio: 1.270735e-01	ci left: 6.058233e-04	ci right 6.886816e-04	k: 950	n:1470000
Cons ci ratio: 4.564993e-02	ci left: 4.877199e-03	ci right 5.105710e-03	k: 7336	n:1470000
KS ci ratio: 7.414319e-02	ci left: 1.827575e-03	ci right 1.968957e-03	k: 2789	n:1470000
HCN4   1470000 perm   1139 sec   (1291 perm/sec)   p_kst 1.897279e-03   p_cons 4.990476e-03   p_joint 6.462585e-04

Joint ci ratio: 1.268072e-01	ci left: 6.043467e-04	ci right 6.868169e-04	k: 954	n:1480000
Cons ci ratio: 4.550756e-02	ci left: 4.874972e-03	ci right 5.102648e-03	k: 7382	n:1480000
KS ci ratio: 7.393158e-02	ci left: 1.825837e-03	ci right 1.966664e-03	k: 2805	n:1480000
HCN4   1480000 perm   1152 sec   (1285 perm/sec)   p_kst 1.895270e-03   p_cons 4.987838e-03   p_joint 6.445946e-04

Joint ci ratio: 1.264108e-01	ci left: 6.041900e-04	ci right 6.863617e-04	k: 960	n:1490000
Cons ci ratio: 4.536958e-02	ci left: 4.872112e-03	ci right 5.098946e-03	k: 7427	n:1490000
KS ci ratio: 7.369561e-02	ci left: 1.825441e-03	ci right 1.965768e-03	k: 2823	n:1490000
HCN4   1490000 perm   1165 sec   (1279 perm/sec)   p_kst 1.894631e-03   p_cons 4.984564e-03   p_joint 6.442953e-04

Joint ci ratio: 1.274774e-01	ci left: 5.898339e-04	ci right 6.707811e-04	k: 944	n:1500000
Cons ci ratio: 4.523589e-02	ci left: 4.868632e-03	ci right 5.094619e-03	k: 7471	n:1500000
KS ci ratio: 7.341015e-02	ci left: 1.827668e-03	ci right 1.967599e-03	k: 2845	n:1500000
HCN4   1500000 perm   1178 sec   (1274 perm/sec)   p_kst 1.896667e-03   p_cons 4.980667e-03   p_joint 6.293333e-04

Joint ci ratio: 1.272757e-01	ci left: 5.878511e-04	ci right 6.683889e-04	k: 947	n:1510000
Cons ci ratio: 4.509734e-02	ci left: 4.866509e-03	ci right 5.091688e-03	k: 7517	n:1510000
KS ci ratio: 7.325604e-02	ci left: 1.823366e-03	ci right 1.962662e-03	k: 2857	n:1510000
HCN4   1510000 perm   1191 sec   (1268 perm/sec)   p_kst 1.892053e-03   p_cons 4.978146e-03   p_joint 6.271523e-04

Joint ci ratio: 1.271418e-01	ci left: 5.852575e-04	ci right 6.653493e-04	k: 949	n:1520000
Cons ci ratio: 4.496902e-02	ci left: 4.862463e-03	ci right 5.086798e-03	k: 7560	n:1520000
KS ci ratio: 7.306465e-02	ci left: 1.821058e-03	ci right 1.959799e-03	k: 2872	n:1520000
HCN4   1520000 perm   1204 sec   (1263 perm/sec)   p_kst 1.889474e-03   p_cons 4.973684e-03   p_joint 6.243421e-04

Joint ci ratio: 1.265437e-01	ci left: 5.871280e-04	ci right 6.670695e-04	k: 958	n:1530000
Cons ci ratio: 4.481219e-02	ci left: 4.864934e-03	ci right 5.088580e-03	k: 7613	n:1530000
KS ci ratio: 7.267333e-02	ci left: 1.829048e-03	ci right 1.967620e-03	k: 2903	n:1530000
HCN4   1530000 perm   1217 sec   (1257 perm/sec)   p_kst 1.897386e-03   p_cons 4.975817e-03   p_joint 6.261438e-04

Joint ci ratio: 1.256943e-01	ci left: 5.914908e-04	ci right 6.714455e-04	k: 971	n:1540000
Cons ci ratio: 4.468335e-02	ci left: 4.861595e-03	ci right 5.084429e-03	k: 7657	n:1540000
KS ci ratio: 7.238715e-02	ci left: 1.831835e-03	ci right 1.970049e-03	k: 2926	n:1540000
HCN4   1540000 perm   1230 sec   (1252 perm/sec)   p_kst 1.900000e-03   p_cons 4.972078e-03   p_joint 6.305195e-04

Joint ci ratio: 1.253723e-01	ci left: 5.907993e-04	ci right 6.704406e-04	k: 976	n:1550000
Cons ci ratio: 4.457016e-02	ci left: 4.855110e-03	ci right 5.077068e-03	k: 7696	n:1550000
KS ci ratio: 7.216561e-02	ci left: 1.831420e-03	ci right 1.969161e-03	k: 2944	n:1550000
HCN4   1550000 perm   1244 sec   (1246 perm/sec)   p_kst 1.899355e-03   p_cons 4.965161e-03   p_joint 6.296774e-04

Joint ci ratio: 1.043470e-01	ci left: 8.566743e-04	ci right 9.516046e-04	k: 1409	n:1560000
Cons ci ratio: 4.439155e-02	ci left: 4.863290e-03	ci right 5.084708e-03	k: 7758	n:1560000
KS ci ratio: 7.187323e-02	ci left: 1.834788e-03	ci right 1.972200e-03	k: 2968	n:1560000
HCN4   1560000 perm   1257 sec   (1241 perm/sec)   p_kst 1.902564e-03   p_cons 4.973077e-03   p_joint 9.032051e-04

Joint ci ratio: 1.041995e-01	ci left: 8.536990e-04	ci right 9.481577e-04	k: 1413	n:1570000
Cons ci ratio: 4.426060e-02	ci left: 4.861288e-03	ci right 5.081946e-03	k: 7804	n:1570000
KS ci ratio: 7.170449e-02	ci left: 1.831858e-03	ci right 1.968716e-03	k: 2982	n:1570000
HCN4   1570000 perm   1271 sec   (1235 perm/sec)   p_kst 1.899363e-03   p_cons 4.970701e-03   p_joint 9.000000e-04

Joint ci ratio: 1.039060e-01	ci left: 8.532274e-04	ci right 9.473517e-04	k: 1421	n:1580000
Cons ci ratio: 4.414775e-02	ci left: 4.855557e-03	ci right 5.075378e-03	k: 7844	n:1580000
KS ci ratio: 7.146529e-02	ci left: 1.832696e-03	ci right 1.969140e-03	k: 3002	n:1580000
HCN4   1580000 perm   1285 sec   (1229 perm/sec)   p_kst 1.900000e-03   p_cons 4.964557e-03   p_joint 8.993671e-04

Joint ci ratio: 1.036150e-01	ci left: 8.527620e-04	ci right 9.465555e-04	k: 1429	n:1590000
Cons ci ratio: 4.402454e-02	ci left: 4.852386e-03	ci right 5.071435e-03	k: 7888	n:1590000
KS ci ratio: 7.118130e-02	ci left: 1.835995e-03	ci right 1.972119e-03	k: 3026	n:1590000
HCN4   1590000 perm   1299 sec   (1224 perm/sec)   p_kst 1.903145e-03   p_cons 4.961006e-03   p_joint 8.987421e-04

Joint ci ratio: 1.033264e-01	ci left: 8.523029e-04	ci right 9.457689e-04	k: 1437	n:1600000
Cons ci ratio: 4.389402e-02	ci left: 4.851111e-03	ci right 5.069437e-03	k: 7935	n:1600000
KS ci ratio: 7.097063e-02	ci left: 1.835570e-03	ci right 1.971243e-03	k: 3044	n:1600000
HCN4   1600000 perm   1313 sec   (1218 perm/sec)   p_kst 1.902500e-03   p_cons 4.959375e-03   p_joint 8.981250e-04

Joint ci ratio: 1.030402e-01	ci left: 8.518498e-04	ci right 9.449917e-04	k: 1445	n:1610000
Cons ci ratio: 4.377843e-02	ci left: 4.846781e-03	ci right 5.064323e-03	k: 7977	n:1610000
KS ci ratio: 7.080815e-02	ci left: 1.832710e-03	ci right 1.967849e-03	k: 3058	n:1610000
HCN4   1610000 perm   1327 sec   (1213 perm/sec)   p_kst 1.899379e-03   p_cons 4.954658e-03   p_joint 8.975155e-04

Joint ci ratio: 1.027918e-01	ci left: 8.508012e-04	ci right 9.435906e-04	k: 1452	n:1620000
Cons ci ratio: 4.366649e-02	ci left: 4.841894e-03	ci right 5.058647e-03	k: 8018	n:1620000
KS ci ratio: 7.053189e-02	ci left: 1.835950e-03	ci right 1.970779e-03	k: 3082	n:1620000
HCN4   1620000 perm   1342 sec   (1208 perm/sec)   p_kst 1.902469e-03   p_cons 4.949383e-03   p_joint 8.962963e-04

Joint ci ratio: 1.024749e-01	ci left: 8.509613e-04	ci right 9.434649e-04	k: 1461	n:1630000
Cons ci ratio: 4.350390e-02	ci left: 4.848598e-03	ci right 5.064823e-03	k: 8078	n:1630000
KS ci ratio: 7.034964e-02	ci left: 1.834330e-03	ci right 1.968677e-03	k: 3098	n:1630000
HCN4   1630000 perm   1356 sec   (1202 perm/sec)   p_kst 1.900613e-03   p_cons 4.955828e-03   p_joint 8.963190e-04

Joint ci ratio: 1.039077e-01	ci left: 8.220111e-04	ci right 9.126933e-04	k: 1421	n:1640000
Cons ci ratio: 4.335650e-02	ci left: 4.852206e-03	ci right 5.067840e-03	k: 8133	n:1640000
KS ci ratio: 7.012371e-02	ci left: 1.835126e-03	ci right 1.969082e-03	k: 3118	n:1640000
HCN4   1640000 perm   1370 sec   (1197 perm/sec)   p_kst 1.901220e-03   p_cons 4.959146e-03   p_joint 8.664634e-04

Joint ci ratio: 1.044609e-01	ci left: 8.081748e-04	ci right 8.978345e-04	k: 1406	n:1650000
Cons ci ratio: 4.325839e-02	ci left: 4.844980e-03	ci right 5.059794e-03	k: 8170	n:1650000
KS ci ratio: 6.991109e-02	ci left: 1.835317e-03	ci right 1.968865e-03	k: 3137	n:1650000
HCN4   1650000 perm   1385 sec   (1191 perm/sec)   p_kst 1.901212e-03   p_cons 4.951515e-03   p_joint 8.521212e-04

Joint ci ratio: 1.042020e-01	ci left: 8.074131e-04	ci right 8.967527e-04	k: 1413	n:1660000
Cons ci ratio: 4.313190e-02	ci left: 4.844397e-03	ci right 5.058541e-03	k: 8218	n:1660000
KS ci ratio: 6.956806e-02	ci left: 1.842611e-03	ci right 1.976004e-03	k: 3168	n:1660000
HCN4   1660000 perm   1400 sec   (1186 perm/sec)   p_kst 1.908434e-03   p_cons 4.950602e-03   p_joint 8.512048e-04

Joint ci ratio: 1.039085e-01	ci left: 8.072441e-04	ci right 8.962980e-04	k: 1421	n:1670000
Cons ci ratio: 4.301699e-02	ci left: 4.841452e-03	ci right 5.054882e-03	k: 8262	n:1670000
KS ci ratio: 6.934955e-02	ci left: 1.843345e-03	ci right 1.976356e-03	k: 3188	n:1670000
HCN4   1670000 perm   1415 sec   (1180 perm/sec)   p_kst 1.908982e-03   p_cons 4.947305e-03   p_joint 8.508982e-04

Joint ci ratio: 1.035812e-01	ci left: 8.076572e-04	ci right 8.964590e-04	k: 1430	n:1680000
Cons ci ratio: 4.288223e-02	ci left: 4.843253e-03	ci right 5.056078e-03	k: 8314	n:1680000
KS ci ratio: 6.915467e-02	ci left: 1.842901e-03	ci right 1.975492e-03	k: 3206	n:1680000
HCN4   1680000 perm   1430 sec   (1175 perm/sec)   p_kst 1.908333e-03   p_cons 4.948810e-03   p_joint 8.511905e-04

Joint ci ratio: 1.032929e-01	ci left: 8.074894e-04	ci right 8.960106e-04	k: 1438	n:1690000
Cons ci ratio: 4.273847e-02	ci left: 4.847377e-03	ci right 5.059651e-03	k: 8370	n:1690000
KS ci ratio: 6.900433e-02	ci left: 1.840138e-03	ci right 1.972230e-03	k: 3220	n:1690000
HCN4   1690000 perm   1445 sec   (1170 perm/sec)   p_kst 1.905325e-03   p_cons 4.952663e-03   p_joint 8.508876e-04

Joint ci ratio: 1.029714e-01	ci left: 8.078971e-04	ci right 8.961706e-04	k: 1447	n:1700000
Cons ci ratio: 4.257077e-02	ci left: 4.857273e-03	ci right 5.069125e-03	k: 8436	n:1700000
KS ci ratio: 6.880170e-02	ci left: 1.840297e-03	ci right 1.971997e-03	k: 3239	n:1700000
HCN4   1700000 perm   1460 sec   (1165 perm/sec)   p_kst 1.905294e-03   p_cons 4.962353e-03   p_joint 8.511765e-04

Joint ci ratio: 1.025473e-01	ci left: 8.100098e-04	ci right 8.981276e-04	k: 1459	n:1710000
Cons ci ratio: 4.245021e-02	ci left: 4.856640e-03	ci right 5.067849e-03	k: 8484	n:1710000
KS ci ratio: 6.863251e-02	ci left: 1.838731e-03	ci right 1.969983e-03	k: 3255	n:1710000
HCN4   1710000 perm   1474 sec   (1160 perm/sec)   p_kst 1.903509e-03   p_cons 4.961404e-03   p_joint 8.532164e-04

Joint ci ratio: 1.023722e-01	ci left: 8.081328e-04	ci right 8.958874e-04	k: 1464	n:1720000
Cons ci ratio: 4.236561e-02	ci left: 4.847961e-03	ci right 5.058363e-03	k: 8518	n:1720000
KS ci ratio: 6.843313e-02	ci left: 1.838898e-03	ci right 1.969765e-03	k: 3274	n:1720000
HCN4   1720000 perm   1490 sec   (1154 perm/sec)   p_kst 1.903488e-03   p_cons 4.952326e-03   p_joint 8.511628e-04

Joint ci ratio: 1.022677e-01	ci left: 8.051512e-04	ci right 8.924874e-04	k: 1467	n:1730000
Cons ci ratio: 4.226413e-02	ci left: 4.843386e-03	ci right 5.053074e-03	k: 8559	n:1730000
KS ci ratio: 6.820438e-02	ci left: 1.840768e-03	ci right 1.971313e-03	k: 3296	n:1730000
HCN4   1730000 perm   1506 sec   (1149 perm/sec)   p_kst 1.905202e-03   p_cons 4.947399e-03   p_joint 8.479769e-04

Joint ci ratio: 1.019556e-01	ci left: 8.055642e-04	ci right 8.926626e-04	k: 1476	n:1740000
Cons ci ratio: 4.213139e-02	ci left: 4.846258e-03	ci right 5.055395e-03	k: 8613	n:1740000
KS ci ratio: 6.800870e-02	ci left: 1.840923e-03	ci right 1.971089e-03	k: 3315	n:1740000
HCN4   1740000 perm   1520 sec   (1144 perm/sec)   p_kst 1.905172e-03   p_cons 4.950000e-03   p_joint 8.482759e-04

Joint ci ratio: 1.015780e-01	ci left: 8.070868e-04	ci right 8.940073e-04	k: 1487	n:1750000
Cons ci ratio: 4.202915e-02	ci left: 4.842312e-03	ci right 5.050760e-03	k: 8655	n:1750000
KS ci ratio: 6.772320e-02	ci left: 1.846132e-03	ci right 1.976097e-03	k: 3343	n:1750000
HCN4   1750000 perm   1535 sec   (1140 perm/sec)   p_kst 1.910286e-03   p_cons 4.945714e-03   p_joint 8.497143e-04

Joint ci ratio: 1.012046e-01	ci left: 8.085926e-04	ci right 8.953361e-04	k: 1498	n:1760000
Cons ci ratio: 4.190102e-02	ci left: 4.844597e-03	ci right 5.052492e-03	k: 8708	n:1760000
KS ci ratio: 6.745129e-02	ci left: 1.850724e-03	ci right 1.980469e-03	k: 3370	n:1760000
HCN4   1760000 perm   1551 sec   (1135 perm/sec)   p_kst 1.914773e-03   p_cons 4.947727e-03   p_joint 8.511364e-04

Joint ci ratio: 1.008686e-01	ci left: 8.095313e-04	ci right 8.960701e-04	k: 1508	n:1770000
Cons ci ratio: 4.179084e-02	ci left: 4.842943e-03	ci right 5.050207e-03	k: 8754	n:1770000
KS ci ratio: 6.731176e-02	ci left: 1.848044e-03	ci right 1.977323e-03	k: 3384	n:1770000
HCN4   1770000 perm   1566 sec   (1130 perm/sec)   p_kst 1.911864e-03   p_cons 4.945763e-03   p_joint 8.519774e-04

Joint ci ratio: 1.018531e-01	ci left: 7.891038e-04	ci right 8.743315e-04	k: 1479	n:1780000
Cons ci ratio: 4.167915e-02	ci left: 4.841864e-03	ci right 5.048515e-03	k: 8801	n:1780000
KS ci ratio: 6.717309e-02	ci left: 1.845395e-03	ci right 1.974212e-03	k: 3398	n:1780000
HCN4   1780000 perm   1581 sec   (1126 perm/sec)   p_kst 1.908989e-03   p_cons 4.944382e-03   p_joint 8.308989e-04

Joint ci ratio: 1.062555e-01	ci left: 7.193987e-04	ci right 8.006663e-04	k: 1359	n:1790000
Cons ci ratio: 4.156362e-02	ci left: 4.841904e-03	ci right 5.047971e-03	k: 8850	n:1790000
KS ci ratio: 6.705496e-02	ci left: 1.841677e-03	ci right 1.969999e-03	k: 3410	n:1790000
HCN4   1790000 perm   1597 sec   (1121 perm/sec)   p_kst 1.905028e-03   p_cons 4.944134e-03   p_joint 7.592179e-04

Joint ci ratio: 1.060219e-01	ci left: 7.186469e-04	ci right 7.996399e-04	k: 1365	n:1800000
Cons ci ratio: 4.143970e-02	ci left: 4.844144e-03	ci right 5.049676e-03	k: 8903	n:1800000
KS ci ratio: 6.684946e-02	ci left: 1.842917e-03	ci right 1.970917e-03	k: 3431	n:1800000
HCN4   1800000 perm   1613 sec   (1116 perm/sec)   p_kst 1.906111e-03   p_cons 4.946111e-03   p_joint 7.583333e-04

Joint ci ratio: 1.056743e-01	ci left: 7.195172e-04	ci right 8.003260e-04	k: 1374	n:1810000
Cons ci ratio: 4.135401e-02	ci left: 4.837611e-03	ci right 5.042431e-03	k: 8940	n:1810000
KS ci ratio: 6.669423e-02	ci left: 1.841427e-03	ci right 1.969015e-03	k: 3447	n:1810000
HCN4   1810000 perm   1628 sec   (1111 perm/sec)   p_kst 1.904420e-03   p_cons 4.939227e-03   p_joint 7.591160e-04

Joint ci ratio: 1.051782e-01	ci left: 7.225184e-04	ci right 8.032596e-04	k: 1387	n:1820000
Cons ci ratio: 4.123194e-02	ci left: 4.839851e-03	ci right 5.044147e-03	k: 8993	n:1820000
KS ci ratio: 6.654008e-02	ci left: 1.839954e-03	ci right 1.967134e-03	k: 3463	n:1820000
HCN4   1820000 perm   1645 sec   (1107 perm/sec)   p_kst 1.902747e-03   p_cons 4.941209e-03   p_joint 7.620879e-04

Joint ci ratio: 1.049140e-01	ci left: 7.222949e-04	ci right 8.027958e-04	k: 1394	n:1830000
Cons ci ratio: 4.111095e-02	ci left: 4.842067e-03	ci right 5.045843e-03	k: 9046	n:1830000
KS ci ratio: 6.636789e-02	ci left: 1.839572e-03	ci right 1.966384e-03	k: 3481	n:1830000
HCN4   1830000 perm   1662 sec   (1101 perm/sec)   p_kst 1.902186e-03   p_cons 4.943169e-03   p_joint 7.617486e-04

Joint ci ratio: 1.047640e-01	ci left: 7.204862e-04	ci right 8.006638e-04	k: 1398	n:1840000
Cons ci ratio: 4.097066e-02	ci left: 4.849102e-03	ci right 5.052461e-03	k: 9108	n:1840000
KS ci ratio: 6.624445e-02	ci left: 1.836522e-03	ci right 1.962880e-03	k: 3494	n:1840000
HCN4   1840000 perm   1678 sec   (1097 perm/sec)   p_kst 1.898913e-03   p_cons 4.950000e-03   p_joint 7.597826e-04

Joint ci ratio: 1.043544e-01	ci left: 7.223822e-04	ci right 8.024372e-04	k: 1409	n:1850000
Cons ci ratio: 4.087212e-02	ci left: 4.846431e-03	ci right 5.049178e-03	k: 9152	n:1850000
KS ci ratio: 6.598052e-02	ci left: 1.841480e-03	ci right 1.967655e-03	k: 3522	n:1850000
HCN4   1850000 perm   1695 sec   (1092 perm/sec)   p_kst 1.903784e-03   p_cons 4.947027e-03   p_joint 7.616216e-04

Joint ci ratio: 1.041700e-01	ci left: 7.211165e-04	ci right 8.008813e-04	k: 1414	n:1860000
Cons ci ratio: 4.078321e-02	ci left: 4.841660e-03	ci right 5.043757e-03	k: 9192	n:1860000
KS ci ratio: 6.578471e-02	ci left: 1.842684e-03	ci right 1.968552e-03	k: 3543	n:1860000
HCN4   1860000 perm   1710 sec   (1087 perm/sec)   p_kst 1.904839e-03   p_cons 4.941935e-03   p_joint 7.602151e-04

Joint ci ratio: 1.040231e-01	ci left: 7.193436e-04	ci right 7.987932e-04	k: 1418	n:1870000
Cons ci ratio: 4.067717e-02	ci left: 4.841176e-03	ci right 5.042715e-03	k: 9240	n:1870000
KS ci ratio: 6.563676e-02	ci left: 1.841246e-03	ci right 1.966722e-03	k: 3559	n:1870000
HCN4   1870000 perm   1727 sec   (1083 perm/sec)   p_kst 1.903209e-03   p_cons 4.941176e-03   p_joint 7.582888e-04

Joint ci ratio: 1.036222e-01	ci left: 7.212164e-04	ci right 8.005472e-04	k: 1429	n:1880000
Cons ci ratio: 4.055879e-02	ci left: 4.843857e-03	ci right 5.044907e-03	k: 9294	n:1880000
KS ci ratio: 6.539826e-02	ci left: 1.845055e-03	ci right 1.970317e-03	k: 3585	n:1880000
HCN4   1880000 perm   1743 sec   (1079 perm/sec)   p_kst 1.906915e-03   p_cons 4.943617e-03   p_joint 7.601064e-04

Joint ci ratio: 1.032976e-01	ci left: 7.220392e-04	ci right 8.011966e-04	k: 1438	n:1890000
Cons ci ratio: 4.044578e-02	ci left: 4.845463e-03	ci right 5.046006e-03	k: 9346	n:1890000
KS ci ratio: 6.517138e-02	ci left: 1.848305e-03	ci right 1.973335e-03	k: 3610	n:1890000
HCN4   1890000 perm   1759 sec   (1074 perm/sec)   p_kst 1.910053e-03   p_cons 4.944974e-03   p_joint 7.608466e-04

Joint ci ratio: 1.032978e-01	ci left: 7.182389e-04	ci right 7.969799e-04	k: 1438	n:1900000
Cons ci ratio: 4.034235e-02	ci left: 4.844968e-03	ci right 5.044966e-03	k: 9394	n:1900000
KS ci ratio: 6.505449e-02	ci left: 1.845307e-03	ci right 1.969903e-03	k: 3623	n:1900000
HCN4   1900000 perm   1776 sec   (1070 perm/sec)   p_kst 1.906842e-03   p_cons 4.944211e-03   p_joint 7.568421e-04

Joint ci ratio: 1.033339e-01	ci left: 7.139684e-04	ci right 7.922702e-04	k: 1437	n:1910000
Cons ci ratio: 4.021403e-02	ci left: 4.850700e-03	ci right 5.050282e-03	k: 9454	n:1910000
KS ci ratio: 6.496508e-02	ci left: 1.840797e-03	ci right 1.964910e-03	k: 3633	n:1910000
HCN4   1910000 perm   1792 sec   (1066 perm/sec)   p_kst 1.902094e-03   p_cons 4.949738e-03   p_joint 7.523560e-04

Joint ci ratio: 1.044300e-01	ci left: 6.950304e-04	ci right 7.721134e-04	k: 1407	n:1920000
Cons ci ratio: 4.012296e-02	ci left: 4.847606e-03	ci right 5.046600e-03	k: 9497	n:1920000
KS ci ratio: 6.475152e-02	ci left: 1.843506e-03	ci right 1.967379e-03	k: 3657	n:1920000
HCN4   1920000 perm   1809 sec   (1061 perm/sec)   p_kst 1.904687e-03   p_cons 4.946354e-03   p_joint 7.328125e-04

Joint ci ratio: 1.044302e-01	ci left: 6.914291e-04	ci right 7.681129e-04	k: 1407	n:1930000
Cons ci ratio: 4.000093e-02	ci left: 4.852240e-03	ci right 5.050804e-03	k: 9555	n:1930000
KS ci ratio: 6.461043e-02	ci left: 1.842111e-03	ci right 1.965609e-03	k: 3673	n:1930000
HCN4   1930000 perm   1826 sec   (1057 perm/sec)   p_kst 1.903109e-03   p_cons 4.950777e-03   p_joint 7.290155e-04

Joint ci ratio: 1.042453e-01	ci left: 6.903751e-04	ci right 7.667981e-04	k: 1412	n:1940000
Cons ci ratio: 3.991130e-02	ci left: 4.849172e-03	ci right 5.047156e-03	k: 9598	n:1940000
KS ci ratio: 6.447025e-02	ci left: 1.840729e-03	ci right 1.963858e-03	k: 3689	n:1940000
HCN4   1940000 perm   1843 sec   (1052 perm/sec)   p_kst 1.901546e-03   p_cons 4.947423e-03   p_joint 7.278351e-04

Joint ci ratio: 1.039515e-01	ci left: 6.908305e-04	ci right 7.670752e-04	k: 1420	n:1950000
Cons ci ratio: 3.980153e-02	ci left: 4.851213e-03	ci right 5.048723e-03	k: 9651	n:1950000
KS ci ratio: 6.429622e-02	ci left: 1.841381e-03	ci right 1.964208e-03	k: 3709	n:1950000
HCN4   1950000 perm   1860 sec   (1048 perm/sec)   p_kst 1.902051e-03   p_cons 4.949231e-03   p_joint 7.282051e-04

Joint ci ratio: 1.038056e-01	ci left: 6.892936e-04	ci right 7.652554e-04	k: 1424	n:1960000
Cons ci ratio: 3.968445e-02	ci left: 4.855255e-03	ci right 5.052334e-03	k: 9708	n:1960000
KS ci ratio: 6.414945e-02	ci left: 1.840521e-03	ci right 1.963000e-03	k: 3726	n:1960000
HCN4   1960000 perm   1877 sec   (1044 perm/sec)   p_kst 1.901020e-03   p_cons 4.953061e-03   p_joint 7.265306e-04

Joint ci ratio: 1.034792e-01	ci left: 6.902448e-04	ci right 7.660577e-04	k: 1433	n:1970000
Cons ci ratio: 3.957450e-02	ci left: 4.857749e-03	ci right 5.054371e-03	k: 9762	n:1970000
KS ci ratio: 6.399512e-02	ci left: 1.840168e-03	ci right 1.962318e-03	k: 3744	n:1970000
HCN4   1970000 perm   1893 sec   (1041 perm/sec)   p_kst 1.900508e-03   p_cons 4.955330e-03   p_joint 7.274112e-04

Joint ci ratio: 9.420481e-02	ci left: 8.325690e-04	ci right 9.153667e-04	k: 1729	n:1980000
Cons ci ratio: 3.945537e-02	ci left: 4.862719e-03	ci right 5.058936e-03	k: 9821	n:1980000
KS ci ratio: 6.375707e-02	ci left: 1.844790e-03	ci right 1.966775e-03	k: 3772	n:1980000
HCN4   1980000 perm   1910 sec   (1036 perm/sec)   p_kst 1.905051e-03   p_cons 4.960101e-03   p_joint 8.732323e-04

Outputting figure to mutsig2_images.part000000000077/HCN4.9_3644_1980000_0.0019051_0.0049601_0.00087323.png
                gene_name: HCN4
               theta_stop: 0.094 
                    nperm: 1980000 
                     p_ks: 0.0019 
        ci_ks_bounds_left: 0.0018 
       ci_ks_bounds_right: 0.0020 
                   p_cons: 0.0050 
      ci_cons_bounds_left: 0.0049 
     ci_cons_bounds_right: 0.0051 
                  p_joint: 0.00087 
     ci_joint_bounds_left: 0.00083 
    ci_joint_bounds_right: 0.00092 

Current progress: 14 percent done.
HEATR5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.896174e-02	ci left: 8.025773e-01	ci right 8.180415e-01	k: 8104	n:10000
Cons ci ratio: 2.173850e-02	ci left: 7.563609e-01	ci right 7.730846e-01	k: 7648	n:10000
KS ci ratio: 2.997394e-02	ci left: 6.214554e-01	ci right 6.404682e-01	k: 6310	n:10000
HEATR5B   10000 perm   3 sec   (3621 perm/sec)   p_kst 6.310000e-01   p_cons 7.648000e-01   p_joint 8.104000e-01

Outputting figure to mutsig2_images.part000000000077/HEATR5B.9_6356_10000_0.631_0.7648_0.8104.png
                gene_name: HEATR5B
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 16 percent done.
HECTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.633558e-02	ci left: 5.279684e-01	ci right 5.476096e-01	k: 5378	n:10000
Cons ci ratio: 5.535413e-02	ci left: 3.246562e-01	ci right 3.432406e-01	k: 3339	n:10000
KS ci ratio: 4.958674e-02	ci left: 3.749500e-01	ci right 3.941173e-01	k: 3845	n:10000
HECTD1   10000 perm   3 sec   (3902 perm/sec)   p_kst 3.845000e-01   p_cons 3.339000e-01   p_joint 5.378000e-01

Outputting figure to mutsig2_images.part000000000077/HECTD1.9_8001_10000_0.3845_0.3339_0.5378.png
                gene_name: HECTD1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 17 percent done.
HECW1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
Cons ci ratio: 2.709509e-01	ci left: 1.771967e-02	ci right 2.336449e-02	k: 204	n:10000
KS ci ratio: 1.230716e-01	ci left: 8.640461e-02	ci right 9.783428e-02	k: 920	n:10000
HECW1   10000 perm   2 sec   (4352 perm/sec)   p_kst 9.200000e-02   p_cons 2.040000e-02   p_joint 3.010000e-02

Joint ci ratio: 1.569380e-01	ci left: 2.787170e-02	ci right 3.266616e-02	k: 604	n:20000
Cons ci ratio: 1.899469e-01	ci left: 1.886701e-02	ci right 2.287398e-02	k: 416	n:20000
KS ci ratio: 8.668999e-02	ci left: 8.871513e-02	ci right 9.680371e-02	k: 1854	n:20000
HECW1   20000 perm   5 sec   (3728 perm/sec)   p_kst 9.270000e-02   p_cons 2.080000e-02   p_joint 3.020000e-02

Joint ci ratio: 1.565686e-01	ci left: 1.886230e-02	ci right 2.209817e-02	k: 613	n:30000
Cons ci ratio: 1.462073e-01	ci left: 2.168684e-02	ci right 2.513964e-02	k: 701	n:30000
KS ci ratio: 7.131347e-02	ci left: 8.822763e-02	ci right 9.478506e-02	k: 2744	n:30000
HECW1   30000 perm   8 sec   (3722 perm/sec)   p_kst 9.146667e-02   p_cons 2.336667e-02   p_joint 2.043333e-02

Joint ci ratio: 9.905703e-02	ci left: 3.580575e-02	ci right 3.956175e-02	k: 1506	n:40000
Cons ci ratio: 1.262061e-01	ci left: 2.206187e-02	ci right 2.505785e-02	k: 941	n:40000
KS ci ratio: 6.185254e-02	ci left: 8.842059e-02	ci right 9.408891e-02	k: 3649	n:40000
HECW1   40000 perm   11 sec   (3685 perm/sec)   p_kst 9.122500e-02   p_cons 2.352500e-02   p_joint 3.765000e-02

Joint ci ratio: 1.165055e-01	ci left: 2.084867e-02	ci right 2.344723e-02	k: 1106	n:50000
Cons ci ratio: 1.122254e-01	ci left: 2.248166e-02	ci right 2.517402e-02	k: 1190	n:50000
KS ci ratio: 5.536611e-02	ci left: 8.859158e-02	ci right 9.365600e-02	k: 4555	n:50000
HECW1   50000 perm   14 sec   (3637 perm/sec)   p_kst 9.110000e-02   p_cons 2.380000e-02   p_joint 2.212000e-02

Joint ci ratio: 1.016560e-01	ci left: 2.295263e-02	ci right 2.542703e-02	k: 1450	n:60000
Cons ci ratio: 1.015843e-01	ci left: 2.298513e-02	ci right 2.546118e-02	k: 1452	n:60000
KS ci ratio: 5.085081e-02	ci left: 8.782050e-02	ci right 9.241924e-02	k: 5406	n:60000
HECW1   60000 perm   17 sec   (3584 perm/sec)   p_kst 9.010000e-02   p_cons 2.420000e-02   p_joint 2.416667e-02

Joint ci ratio: 1.044768e-01	ci left: 1.868334e-02	ci right 2.075674e-02	k: 1379	n:70000
Cons ci ratio: 9.408206e-02	ci left: 2.306027e-02	ci right 2.535083e-02	k: 1693	n:70000
KS ci ratio: 4.683503e-02	ci left: 8.883684e-02	ci right 9.311142e-02	k: 6367	n:70000
HECW1   70000 perm   20 sec   (3541 perm/sec)   p_kst 9.095714e-02   p_cons 2.418571e-02   p_joint 1.970000e-02

Joint ci ratio: 1.003965e-01	ci left: 1.776035e-02	ci right 1.964979e-02	k: 1495	n:80000
Cons ci ratio: 8.854629e-02	ci left: 2.285264e-02	ci right 2.498207e-02	k: 1912	n:80000
KS ci ratio: 4.363469e-02	ci left: 8.963445e-02	ci right 9.364523e-02	k: 7330	n:80000
HECW1   80000 perm   23 sec   (3497 perm/sec)   p_kst 9.162500e-02   p_cons 2.390000e-02   p_joint 1.868750e-02

Joint ci ratio: 9.159608e-02	ci left: 1.903012e-02	ci right 2.086767e-02	k: 1794	n:90000
Cons ci ratio: 8.314893e-02	ci left: 2.309699e-02	ci right 2.511162e-02	k: 2168	n:90000
KS ci ratio: 4.118147e-02	ci left: 8.957995e-02	ci right 9.335754e-02	k: 8231	n:90000
HECW1   90000 perm   26 sec   (3453 perm/sec)   p_kst 9.145556e-02   p_cons 2.408889e-02   p_joint 1.993333e-02

Outputting figure to mutsig2_images.part000000000077/HECW1.9_4933_90000_0.091456_0.024089_0.019933.png
                gene_name: HECW1
               theta_stop: 0.092 
                    nperm: 90000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 19 percent done.
HCLS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.180047e-02	ci left: 2.779488e-01	ci right 2.957755e-01	k: 2868	n:10000
Cons ci ratio: 1.336559e-01	ci left: 7.388330e-02	ci right 8.456334e-02	k: 791	n:10000
KS ci ratio: 2.066107e-02	ci left: 7.743839e-01	ci right 7.906512e-01	k: 7826	n:10000
HCLS1   10000 perm   2 sec   (5338 perm/sec)   p_kst 7.826000e-01   p_cons 7.910000e-02   p_joint 2.868000e-01

Joint ci ratio: 5.901115e-02	ci left: 1.753892e-01	ci right 1.861038e-01	k: 3614	n:20000
Cons ci ratio: 9.695863e-02	ci left: 7.187539e-02	ci right 7.924857e-02	k: 1510	n:20000
KS ci ratio: 1.367961e-02	ci left: 7.985809e-01	ci right 8.096305e-01	k: 16083	n:20000
HCLS1   20000 perm   4 sec   (4862 perm/sec)   p_kst 8.041500e-01   p_cons 7.550000e-02   p_joint 1.807000e-01

Outputting figure to mutsig2_images.part000000000077/HCLS1.8_1513_20000_0.80415_0.0755_0.1807.png
                gene_name: HCLS1
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 21 percent done.
HDC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.986605e-02	ci left: 4.816553e-01	ci right 5.013497e-01	k: 4915	n:10000
Cons ci ratio: 6.987054e-02	ci left: 2.309646e-01	ci right 2.477875e-01	k: 2393	n:10000
KS ci ratio: 7.692583e-03	ci left: 9.591130e-01	ci right 9.666143e-01	k: 9630	n:10000
HDC   10000 perm   2 sec   (5229 perm/sec)   p_kst 9.630000e-01   p_cons 2.393000e-01   p_joint 4.915000e-01

Outputting figure to mutsig2_images.part000000000077/HDC.8_2037_10000_0.963_0.2393_0.4915.png
                gene_name: HDC
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 22 percent done.
HAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.912852e-01	ci left: 3.643453e-02	ci right 4.423614e-02	k: 402	n:10000
Cons ci ratio: 7.426411e-02	ci left: 2.097433e-01	ci right 2.260214e-01	k: 2178	n:10000
KS ci ratio: 1.471006e-01	ci left: 6.140379e-02	ci right 7.125068e-02	k: 662	n:10000
HAS1   10000 perm   2 sec   (5999 perm/sec)   p_kst 6.620000e-02   p_cons 2.178000e-01   p_joint 4.020000e-02

Joint ci ratio: 7.432380e-02	ci left: 1.175435e-01	ci right 1.266667e-01	k: 2441	n:20000
Cons ci ratio: 5.366429e-02	ci left: 2.049171e-01	ci right 2.162672e-01	k: 4211	n:20000
KS ci ratio: 1.040180e-01	ci left: 6.284124e-02	ci right 6.978550e-02	k: 1325	n:20000
HAS1   20000 perm   4 sec   (5373 perm/sec)   p_kst 6.625000e-02   p_cons 2.105500e-01   p_joint 1.220500e-01

Joint ci ratio: 9.129107e-02	ci left: 5.525076e-02	ci right 6.056859e-02	k: 1736	n:30000
Cons ci ratio: 4.383885e-02	ci left: 2.057993e-01	ci right 2.150569e-01	k: 6312	n:30000
KS ci ratio: 8.213507e-02	ci left: 6.766100e-02	ci right 7.348916e-02	k: 2116	n:30000
HAS1   30000 perm   6 sec   (5121 perm/sec)   p_kst 7.053333e-02   p_cons 2.104000e-01   p_joint 5.786667e-02

Outputting figure to mutsig2_images.part000000000077/HAS1.7_1757_30000_0.070533_0.2104_0.057867.png
                gene_name: HAS1
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.061 

Current progress: 24 percent done.
HEATR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.355230e-01	ci left: 7.194552e-02	ci right 8.250234e-02	k: 771	n:10000
Cons ci ratio: 3.713756e-03	ci left: 9.891692e-01	ci right 9.929363e-01	k: 9912	n:10000
KS ci ratio: 1.673668e-01	ci left: 4.763334e-02	ci right 5.642994e-02	k: 519	n:10000
HEATR4   10000 perm   2 sec   (5023 perm/sec)   p_kst 5.190000e-02   p_cons 9.912000e-01   p_joint 7.710000e-02

Joint ci ratio: 7.132741e-02	ci left: 1.265005e-01	ci right 1.359070e-01	k: 2623	n:20000
Cons ci ratio: 2.473161e-03	ci left: 9.908276e-01	ci right 9.933261e-01	k: 19843	n:20000
KS ci ratio: 1.193816e-01	ci left: 4.808865e-02	ci right 5.424267e-02	k: 1022	n:20000
HEATR4   20000 perm   5 sec   (4429 perm/sec)   p_kst 5.110000e-02   p_cons 9.921500e-01   p_joint 1.311500e-01

Joint ci ratio: 6.465069e-02	ci left: 1.056263e-01	ci right 1.127163e-01	k: 3274	n:30000
Cons ci ratio: 2.045021e-03	ci left: 9.908553e-01	ci right 9.929144e-01	k: 29758	n:30000
KS ci ratio: 9.858054e-02	ci left: 4.759332e-02	ci right 5.256094e-02	k: 1501	n:30000
HEATR4   30000 perm   7 sec   (4033 perm/sec)   p_kst 5.003333e-02   p_cons 9.919333e-01   p_joint 1.091333e-01

Outputting figure to mutsig2_images.part000000000077/HEATR4.7_3004_30000_0.050033_0.99193_0.10913.png
                gene_name: HEATR4
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 26 percent done.
HAPLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.776735e-02	ci left: 8.220852e-01	ci right 8.369224e-01	k: 8296	n:10000
Cons ci ratio: 3.755887e-02	ci left: 5.114541e-01	ci right 5.311335e-01	k: 5213	n:10000
KS ci ratio: 3.685760e-02	ci left: 5.208609e-01	ci right 5.405212e-01	k: 5307	n:10000
HAPLN1   10000 perm   2 sec   (6331 perm/sec)   p_kst 5.307000e-01   p_cons 5.213000e-01   p_joint 8.296000e-01

Outputting figure to mutsig2_images.part000000000077/HAPLN1.6_1081_10000_0.5307_0.5213_0.8296.png
                gene_name: HAPLN1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 28 percent done.
HCFC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.009630e-03	ci left: 9.655188e-01	ci right 9.724045e-01	k: 9691	n:10000
Cons ci ratio: 4.404582e-02	ci left: 4.321347e-01	ci right 4.516992e-01	k: 4419	n:10000
KS ci ratio: 2.038770e-02	ci left: 7.789437e-01	ci right 7.950888e-01	k: 7871	n:10000
HCFC2   10000 perm   2 sec   (5488 perm/sec)   p_kst 7.871000e-01   p_cons 4.419000e-01   p_joint 9.691000e-01

Outputting figure to mutsig2_images.part000000000077/HCFC2.6_2439_10000_0.7871_0.4419_0.9691.png
                gene_name: HCFC2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 29 percent done.
HDAC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.309951e-02	ci left: 8.935428e-01	ci right 9.054233e-01	k: 8996	n:10000
Cons ci ratio: 4.214176e-02	ci left: 4.539876e-01	ci right 4.736335e-01	k: 4638	n:10000
KS ci ratio: 1.221143e-02	ci left: 9.058655e-01	ci right 9.170934e-01	k: 9116	n:10000
HDAC6   10000 perm   2 sec   (5291 perm/sec)   p_kst 9.116000e-01   p_cons 4.638000e-01   p_joint 8.996000e-01

Outputting figure to mutsig2_images.part000000000077/HDAC6.6_3760_10000_0.9116_0.4638_0.8996.png
                gene_name: HDAC6
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 31 percent done.
HECTD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.412073e-02	ci left: 3.346859e-01	ci right 3.534050e-01	k: 3440	n:10000
Cons ci ratio: 9.510880e-02	ci left: 1.382511e-01	ci right 1.521563e-01	k: 1451	n:10000
KS ci ratio: 2.784546e-02	ci left: 6.552495e-01	ci right 6.738545e-01	k: 6646	n:10000
HECTD2   10000 perm   2 sec   (4960 perm/sec)   p_kst 6.646000e-01   p_cons 1.451000e-01   p_joint 3.440000e-01

Outputting figure to mutsig2_images.part000000000077/HECTD2.6_2439_10000_0.6646_0.1451_0.344.png
                gene_name: HECTD2
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 33 percent done.
HAO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.832145e-02	ci left: 6.476011e-01	ci right 6.663073e-01	k: 6570	n:10000
Cons ci ratio: 4.585912e-02	ci left: 4.123937e-01	ci right 4.318517e-01	k: 4221	n:10000
KS ci ratio: 3.384917e-02	ci left: 5.630346e-01	ci right 5.825230e-01	k: 5728	n:10000
HAO1   10000 perm   2 sec   (5413 perm/sec)   p_kst 5.728000e-01   p_cons 4.221000e-01   p_joint 6.570000e-01

Outputting figure to mutsig2_images.part000000000077/HAO1.5_1145_10000_0.5728_0.4221_0.657.png
                gene_name: HAO1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 34 percent done.
HAUS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.143955e-02	ci left: 5.988532e-01	ci right 6.180835e-01	k: 6085	n:10000
Cons ci ratio: 1.052552e-01	ci left: 1.153530e-01	ci right 1.282683e-01	k: 1217	n:10000
KS ci ratio: 3.126828e-02	ci left: 6.014639e-01	ci right 6.206713e-01	k: 6111	n:10000
HAUS3   10000 perm   2 sec   (4795 perm/sec)   p_kst 6.111000e-01   p_cons 1.217000e-01   p_joint 6.085000e-01

Joint ci ratio: 2.637172e-02	ci left: 5.179009e-01	ci right 5.317919e-01	k: 10497	n:20000
Cons ci ratio: 7.483080e-02	ci left: 1.161170e-01	ci right 1.251936e-01	k: 2412	n:20000
KS ci ratio: 2.164867e-02	ci left: 6.143346e-01	ci right 6.278302e-01	k: 12422	n:20000
HAUS3   20000 perm   4 sec   (4641 perm/sec)   p_kst 6.211000e-01   p_cons 1.206000e-01   p_joint 5.248500e-01

Outputting figure to mutsig2_images.part000000000077/HAUS3.5_1828_20000_0.6211_0.1206_0.52485.png
                gene_name: HAUS3
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 36 percent done.
HAUS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.859208e-02	ci left: 6.432750e-01	ci right 6.620360e-01	k: 6527	n:10000
Cons ci ratio: 4.162025e-02	ci left: 4.601778e-01	ci right 4.798397e-01	k: 4700	n:10000
KS ci ratio: 4.021851e-02	ci left: 4.772584e-01	ci right 4.969491e-01	k: 4871	n:10000
HAUS6   10000 perm   2 sec   (4613 perm/sec)   p_kst 4.871000e-01   p_cons 4.700000e-01   p_joint 6.527000e-01

Outputting figure to mutsig2_images.part000000000077/HAUS6.5_2936_10000_0.4871_0.47_0.6527.png
                gene_name: HAUS6
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 38 percent done.
HDAC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.004063e-02	ci left: 7.847215e-01	ci right 8.007076e-01	k: 7928	n:10000
Cons ci ratio: 1.772336e-02	ci left: 8.227970e-01	ci right 8.376101e-01	k: 8303	n:10000
KS ci ratio: 3.126828e-02	ci left: 6.014639e-01	ci right 6.206713e-01	k: 6111	n:10000
HDAC4   10000 perm   2 sec   (5249 perm/sec)   p_kst 6.111000e-01   p_cons 8.303000e-01   p_joint 7.928000e-01

Outputting figure to mutsig2_images.part000000000077/HDAC4.5_3359_10000_0.6111_0.8303_0.7928.png
                gene_name: HDAC4
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 40 percent done.
HEATR5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.383317e-02	ci left: 7.212834e-01	ci right 7.387824e-01	k: 7301	n:10000
Cons ci ratio: 6.728524e-02	ci left: 2.447989e-01	ci right 2.619450e-01	k: 2533	n:10000
KS ci ratio: 1.449229e-02	ci left: 8.732655e-01	ci right 8.861124e-01	k: 8798	n:10000
HEATR5A   10000 perm   2 sec   (4601 perm/sec)   p_kst 8.798000e-01   p_cons 2.533000e-01   p_joint 7.301000e-01

Outputting figure to mutsig2_images.part000000000077/HEATR5A.5_5382_10000_0.8798_0.2533_0.7301.png
                gene_name: HEATR5A
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 41 percent done.
HECTD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.752814e-02	ci left: 8.259500e-01	ci right 8.406553e-01	k: 8334	n:10000
Cons ci ratio: 3.605153e-02	ci left: 5.318734e-01	ci right 5.515023e-01	k: 5417	n:10000
KS ci ratio: 2.417193e-02	ci left: 7.156290e-01	ci right 7.332401e-01	k: 7245	n:10000
HECTD3   10000 perm   2 sec   (5662 perm/sec)   p_kst 7.245000e-01   p_cons 5.417000e-01   p_joint 8.334000e-01

Outputting figure to mutsig2_images.part000000000077/HECTD3.5_2670_10000_0.7245_0.5417_0.8334.png
                gene_name: HECTD3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 43 percent done.
HAO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.945981e-02	ci left: 7.943566e-01	ci right 8.100670e-01	k: 8023	n:10000
Cons ci ratio: 2.156933e-02	ci left: 7.591946e-01	ci right 7.758493e-01	k: 7676	n:10000
KS ci ratio: 3.150556e-02	ci left: 5.978492e-01	ci right 6.170882e-01	k: 6075	n:10000
HAO2   10000 perm   2 sec   (5824 perm/sec)   p_kst 6.075000e-01   p_cons 7.676000e-01   p_joint 8.023000e-01

Outputting figure to mutsig2_images.part000000000077/HAO2.4_1084_10000_0.6075_0.7676_0.8023.png
                gene_name: HAO2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 45 percent done.
HAPLN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.267076e-02	ci left: 4.477990e-01	ci right 4.674257e-01	k: 4576	n:10000
Cons ci ratio: 9.526235e-02	ci left: 1.378591e-01	ci right 1.517485e-01	k: 1447	n:10000
KS ci ratio: 3.107132e-02	ci left: 6.044766e-01	ci right 6.236569e-01	k: 6141	n:10000
HAPLN3   10000 perm   2 sec   (6152 perm/sec)   p_kst 6.141000e-01   p_cons 1.447000e-01   p_joint 4.576000e-01

Outputting figure to mutsig2_images.part000000000077/HAPLN3.4_1099_10000_0.6141_0.1447_0.4576.png
                gene_name: HAPLN3
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 47 percent done.
HAPLN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.290595e-02	ci left: 2.708188e-01	ci right 2.885097e-01	k: 2796	n:10000
Cons ci ratio: 3.730385e-02	ci left: 5.148561e-01	ci right 5.345295e-01	k: 5247	n:10000
KS ci ratio: 7.082374e-02	ci left: 2.261254e-01	ci right 2.428295e-01	k: 2344	n:10000
HAPLN4   10000 perm   2 sec   (5800 perm/sec)   p_kst 2.344000e-01   p_cons 5.247000e-01   p_joint 2.796000e-01

Outputting figure to mutsig2_images.part000000000077/HAPLN4.4_1229_10000_0.2344_0.5247_0.2796.png
                gene_name: HAPLN4
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 48 percent done.
HARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.290821e-02	ci left: 3.449190e-01	ci right 3.637659e-01	k: 3543	n:10000
Cons ci ratio: 9.817468e-02	ci left: 1.307088e-01	ci right 1.443032e-01	k: 1374	n:10000
KS ci ratio: 4.740610e-02	ci left: 3.963535e-01	ci right 4.157013e-01	k: 4060	n:10000
HARS2   10000 perm   2 sec   (5920 perm/sec)   p_kst 4.060000e-01   p_cons 1.374000e-01   p_joint 3.543000e-01

Outputting figure to mutsig2_images.part000000000077/HARS2.4_1573_10000_0.406_0.1374_0.3543.png
                gene_name: HARS2
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 50 percent done.
HAS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.446737e-02	ci left: 1.696626e-01	ci right 1.847259e-01	k: 1771	n:10000
Cons ci ratio: 1.473387e-01	ci left: 6.121070e-02	ci right 7.104390e-02	k: 660	n:10000
KS ci ratio: 1.105409e-01	ci left: 1.054923e-01	ci right 1.179349e-01	k: 1116	n:10000
HAS2   10000 perm   2 sec   (5627 perm/sec)   p_kst 1.116000e-01   p_cons 6.600000e-02   p_joint 1.771000e-01

Joint ci ratio: 8.181969e-02	ci left: 9.872217e-02	ci right 1.071937e-01	k: 2058	n:20000
Cons ci ratio: 1.037251e-01	ci left: 6.318274e-02	ci right 7.014389e-02	k: 1332	n:20000
KS ci ratio: 7.646149e-02	ci left: 1.116914e-01	ci right 1.206206e-01	k: 2322	n:20000
HAS2   20000 perm   4 sec   (5135 perm/sec)   p_kst 1.161000e-01   p_cons 6.660000e-02   p_joint 1.029000e-01

Joint ci ratio: 7.371831e-02	ci left: 8.294929e-02	ci right 8.933112e-02	k: 2583	n:30000
Cons ci ratio: 8.506848e-02	ci left: 6.328128e-02	ci right 6.893644e-02	k: 1982	n:30000
KS ci ratio: 6.290679e-02	ci left: 1.109834e-01	ci right 1.182248e-01	k: 3437	n:30000
HAS2   30000 perm   6 sec   (4937 perm/sec)   p_kst 1.145667e-01   p_cons 6.606667e-02   p_joint 8.610000e-02

Outputting figure to mutsig2_images.part000000000077/HAS2.4_1671_30000_0.11457_0.066067_0.0861.png
                gene_name: HAS2
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.089 

Current progress: 52 percent done.
HAS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.861839e-02	ci left: 4.975503e-01	ci right 5.172454e-01	k: 5074	n:10000
Cons ci ratio: 8.154618e-03	ci left: 9.545097e-01	ci right 9.624204e-01	k: 9586	n:10000
KS ci ratio: 6.271914e-02	ci left: 2.720070e-01	ci right 2.897208e-01	k: 2808	n:10000
HAS3   10000 perm   2 sec   (5782 perm/sec)   p_kst 2.808000e-01   p_cons 9.586000e-01   p_joint 5.074000e-01

Outputting figure to mutsig2_images.part000000000077/HAS3.4_1786_10000_0.2808_0.9586_0.5074.png
                gene_name: HAS3
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 53 percent done.
HBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.308428e-02	ci left: 7.338101e-01	ci right 7.510485e-01	k: 7425	n:10000
Cons ci ratio: 7.437322e-02	ci left: 2.092502e-01	ci right 2.255148e-01	k: 2173	n:10000
KS ci ratio: 1.331581e-02	ci left: 8.904663e-01	ci right 9.025016e-01	k: 8966	n:10000
HBP1   10000 perm   2 sec   (6064 perm/sec)   p_kst 8.966000e-01   p_cons 2.173000e-01   p_joint 7.425000e-01

Outputting figure to mutsig2_images.part000000000077/HBP1.4_1585_10000_0.8966_0.2173_0.7425.png
                gene_name: HBP1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 55 percent done.
HDAC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.933096e-02	ci left: 7.964874e-01	ci right 8.121349e-01	k: 8044	n:10000
Cons ci ratio: 2.952506e-02	ci left: 6.284917e-01	ci right 6.474279e-01	k: 6380	n:10000
KS ci ratio: 2.973629e-02	ci left: 6.251744e-01	ci right 6.441471e-01	k: 6347	n:10000
HDAC7   10000 perm   2 sec   (5670 perm/sec)   p_kst 6.347000e-01   p_cons 6.380000e-01   p_joint 8.044000e-01

Outputting figure to mutsig2_images.part000000000077/HDAC7.4_3080_10000_0.6347_0.638_0.8044.png
                gene_name: HDAC7
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 57 percent done.
HEATR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.427613e-02	ci left: 2.623061e-01	ci right 2.798274e-01	k: 2710	n:10000
Cons ci ratio: 4.887162e-02	ci left: 3.818169e-01	ci right 4.010464e-01	k: 3914	n:10000
KS ci ratio: 9.005031e-02	ci left: 1.520792e-01	ci right 1.665198e-01	k: 1592	n:10000
HEATR3   10000 perm   2 sec   (5758 perm/sec)   p_kst 1.592000e-01   p_cons 3.914000e-01   p_joint 2.710000e-01

Outputting figure to mutsig2_images.part000000000077/HEATR3.4_2103_10000_0.1592_0.3914_0.271.png
                gene_name: HEATR3
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 59 percent done.
HAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.931779e-02	ci left: 1.542387e-01	ci right 1.687591e-01	k: 1614	n:10000
Cons ci ratio: 1.591398e-01	ci left: 5.263174e-02	ci right 6.182831e-02	k: 571	n:10000
KS ci ratio: 4.934669e-02	ci left: 3.772388e-01	ci right 3.964272e-01	k: 3868	n:10000
HAP1   10000 perm   2 sec   (6050 perm/sec)   p_kst 3.868000e-01   p_cons 5.710000e-02   p_joint 1.614000e-01

Joint ci ratio: 6.621623e-02	ci left: 1.441405e-01	ci right 1.540617e-01	k: 2981	n:20000
Cons ci ratio: 1.111972e-01	ci left: 5.523815e-02	ci right 6.179094e-02	k: 1169	n:20000
KS ci ratio: 3.507402e-02	ci left: 3.776504e-01	ci right 3.911832e-01	k: 7688	n:20000
HAP1   20000 perm   4 sec   (5529 perm/sec)   p_kst 3.844000e-01   p_cons 5.845000e-02   p_joint 1.490500e-01

Joint ci ratio: 5.262171e-02	ci left: 1.519767e-01	ci right 1.602233e-01	k: 4682	n:30000
Cons ci ratio: 8.667064e-02	ci left: 6.106012e-02	ci right 6.662471e-02	k: 1914	n:30000
KS ci ratio: 2.863473e-02	ci left: 3.789566e-01	ci right 3.899991e-01	k: 11534	n:30000
HAP1   30000 perm   6 sec   (5307 perm/sec)   p_kst 3.844667e-01   p_cons 6.380000e-02   p_joint 1.560667e-01

Outputting figure to mutsig2_images.part000000000077/HAP1.3_1928_30000_0.38447_0.0638_0.15607.png
                gene_name: HAP1
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 60 percent done.
HAVCR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.603814e-02	ci left: 4.105002e-01	ci right 4.299463e-01	k: 4202	n:10000
Cons ci ratio: 1.713548e-02	ci left: 8.322587e-01	ci right 8.467429e-01	k: 8396	n:10000
KS ci ratio: 9.687168e-02	ci left: 1.338424e-01	ci right 1.475676e-01	k: 1406	n:10000
HAVCR2   10000 perm   2 sec   (6518 perm/sec)   p_kst 1.406000e-01   p_cons 8.396000e-01   p_joint 4.202000e-01

Outputting figure to mutsig2_images.part000000000077/HAVCR2.3_934_10000_0.1406_0.8396_0.4202.png
                gene_name: HAVCR2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 62 percent done.
HBB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.400121e-02	ci left: 4.326334e-01	ci right 4.522002e-01	k: 4424	n:10000
Cons ci ratio: 3.579820e-02	ci left: 5.353783e-01	ci right 5.549953e-01	k: 5452	n:10000
KS ci ratio: 6.737426e-02	ci left: 2.443046e-01	ci right 2.614396e-01	k: 2528	n:10000
HBB   10000 perm   2 sec   (6432 perm/sec)   p_kst 2.528000e-01   p_cons 5.452000e-01   p_joint 4.424000e-01

Outputting figure to mutsig2_images.part000000000077/HBB.3_456_10000_0.2528_0.5452_0.4424.png
                gene_name: HBB
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 64 percent done.
HBE1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.214801e-01	ci left: 8.854359e-02	ci right 1.000940e-01	k: 942	n:10000
Cons ci ratio: 2.115267e-01	ci left: 2.968021e-02	ci right 3.679509e-02	k: 331	n:10000
KS ci ratio: 4.370816e-02	ci left: 4.359251e-01	ci right 4.555065e-01	k: 4457	n:10000
HBE1   10000 perm   1 sec   (6993 perm/sec)   p_kst 4.457000e-01   p_cons 3.310000e-02   p_joint 9.420000e-02

Joint ci ratio: 6.136585e-02	ci left: 1.642247e-01	ci right 1.746715e-01	k: 3388	n:20000
Cons ci ratio: 1.460843e-01	ci left: 3.220637e-02	ci right 3.733005e-02	k: 694	n:20000
KS ci ratio: 3.093402e-02	ci left: 4.383954e-01	ci right 4.522205e-01	k: 8906	n:20000
HBE1   20000 perm   3 sec   (6332 perm/sec)   p_kst 4.453000e-01   p_cons 3.470000e-02   p_joint 1.694000e-01

Joint ci ratio: 4.518389e-02	ci left: 1.960150e-01	ci right 2.051098e-01	k: 6016	n:30000
Cons ci ratio: 1.196653e-01	ci left: 3.246326e-02	ci right 3.662751e-02	k: 1035	n:30000
KS ci ratio: 2.514777e-02	ci left: 4.418287e-01	ci right 4.531148e-01	k: 13424	n:30000
HBE1   30000 perm   5 sec   (6036 perm/sec)   p_kst 4.474667e-01   p_cons 3.450000e-02   p_joint 2.005333e-01

Joint ci ratio: 4.573688e-02	ci left: 1.515899e-01	ci right 1.587103e-01	k: 6205	n:40000
Cons ci ratio: 1.042343e-01	ci left: 3.236723e-02	ci right 3.595082e-02	k: 1365	n:40000
KS ci ratio: 2.188678e-02	ci left: 4.401464e-01	ci right 4.499115e-01	k: 17801	n:40000
HBE1   40000 perm   7 sec   (5835 perm/sec)   p_kst 4.450250e-01   p_cons 3.412500e-02   p_joint 1.551250e-01

Joint ci ratio: 4.027573e-02	ci left: 1.560625e-01	ci right 1.624971e-01	k: 7963	n:50000
Cons ci ratio: 9.321605e-02	ci left: 3.256543e-02	ci right 3.576895e-02	k: 1707	n:50000
KS ci ratio: 1.963924e-02	ci left: 4.390789e-01	ci right 4.478077e-01	k: 22172	n:50000
HBE1   50000 perm   9 sec   (5678 perm/sec)   p_kst 4.434400e-01   p_cons 3.414000e-02   p_joint 1.592600e-01

Outputting figure to mutsig2_images.part000000000077/HBE1.2_456_50000_0.44344_0.03414_0.15926.png
                gene_name: HBE1
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 66 percent done.
HCCS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.454756e-02	ci left: 7.093708e-01	ci right 7.271019e-01	k: 7183	n:10000
Cons ci ratio: 1.988199e-02	ci left: 7.873578e-01	ci right 8.032698e-01	k: 7954	n:10000
KS ci ratio: 4.573716e-02	ci left: 4.136894e-01	ci right 4.331553e-01	k: 4234	n:10000
HCCS   10000 perm   2 sec   (6484 perm/sec)   p_kst 4.234000e-01   p_cons 7.954000e-01   p_joint 7.183000e-01

Outputting figure to mutsig2_images.part000000000077/HCCS.3_831_10000_0.4234_0.7954_0.7183.png
                gene_name: HCCS
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 67 percent done.
HCN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.050926e-02	ci left: 7.769169e-01	ci right 7.931167e-01	k: 7851	n:10000
KS ci ratio: 1.871463e-02	ci left: 8.066388e-01	ci right 8.219776e-01	k: 8144	n:10000
HCN3   10000 perm   2 sec   (5629 perm/sec)   p_kst 8.144000e-01   p_cons 7.851000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HCN3.3_2357_10000_0.8144_0.7851_1.png
                gene_name: HCN3
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
HEBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.702516e-02	ci left: 6.685399e-01	ci right 6.869564e-01	k: 6778	n:10000
Cons ci ratio: 5.366825e-02	ci left: 3.384607e-01	ci right 3.572280e-01	k: 3478	n:10000
KS ci ratio: 4.661919e-02	ci left: 4.044221e-01	ci right 4.238280e-01	k: 4141	n:10000
HEBP1   10000 perm   2 sec   (6070 perm/sec)   p_kst 4.141000e-01   p_cons 3.478000e-01   p_joint 6.778000e-01

Outputting figure to mutsig2_images.part000000000077/HEBP1.3_586_10000_0.4141_0.3478_0.6778.png
                gene_name: HEBP1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 71 percent done.
HECA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.198086e-02	ci left: 1.465847e-01	ci right 1.608177e-01	k: 1536	n:10000
Cons ci ratio: 2.607453e-01	ci left: 1.921493e-02	ci right 2.506805e-02	k: 220	n:10000
KS ci ratio: 3.576934e-02	ci left: 5.357789e-01	ci right 5.553945e-01	k: 5456	n:10000
HECA   10000 perm   2 sec   (6230 perm/sec)   p_kst 5.456000e-01   p_cons 2.200000e-02   p_joint 1.536000e-01

Joint ci ratio: 5.063775e-02	ci left: 2.246777e-01	ci right 2.364007e-01	k: 4610	n:20000
Cons ci ratio: 1.814617e-01	ci left: 2.072815e-02	ci right 2.491218e-02	k: 455	n:20000
KS ci ratio: 2.538891e-02	ci left: 5.368161e-01	ci right 5.506712e-01	k: 10875	n:20000
HECA   20000 perm   4 sec   (5556 perm/sec)   p_kst 5.437500e-01   p_cons 2.275000e-02   p_joint 2.305000e-01

Joint ci ratio: 5.102340e-02	ci left: 1.601889e-01	ci right 1.686095e-01	k: 4931	n:30000
Cons ci ratio: 1.473941e-01	ci left: 2.133336e-02	ci right 2.475987e-02	k: 690	n:30000
KS ci ratio: 2.081901e-02	ci left: 5.359746e-01	ci right 5.472840e-01	k: 16249	n:30000
HECA   30000 perm   6 sec   (5322 perm/sec)   p_kst 5.416333e-01   p_cons 2.300000e-02   p_joint 1.643667e-01

Joint ci ratio: 5.983535e-02	ci left: 9.399317e-02	ci right 9.981550e-02	k: 3875	n:40000
Cons ci ratio: 1.286758e-01	ci left: 2.121417e-02	ci right 2.415569e-02	k: 906	n:40000
KS ci ratio: 1.806299e-02	ci left: 5.358261e-01	ci right 5.456180e-01	k: 21629	n:40000
HECA   40000 perm   8 sec   (5169 perm/sec)   p_kst 5.407250e-01   p_cons 2.265000e-02   p_joint 9.687500e-02

Joint ci ratio: 4.794664e-02	ci left: 1.150855e-01	ci right 1.207589e-01	k: 5895	n:50000
Cons ci ratio: 1.151824e-01	ci left: 2.133448e-02	ci right 2.396135e-02	k: 1131	n:50000
KS ci ratio: 1.623257e-02	ci left: 5.339982e-01	ci right 5.427573e-01	k: 26919	n:50000
HECA   50000 perm   10 sec   (5044 perm/sec)   p_kst 5.383800e-01   p_cons 2.262000e-02   p_joint 1.179000e-01

Joint ci ratio: 4.410265e-02	ci left: 1.137781e-01	ci right 1.189257e-01	k: 6980	n:60000
Cons ci ratio: 1.042242e-01	ci left: 2.183157e-02	ci right 2.424820e-02	k: 1381	n:60000
KS ci ratio: 1.484804e-02	ci left: 5.333837e-01	ci right 5.413793e-01	k: 32243	n:60000
HECA   60000 perm   12 sec   (4932 perm/sec)   p_kst 5.373833e-01   p_cons 2.301667e-02   p_joint 1.163333e-01

Joint ci ratio: 3.977598e-02	ci left: 1.194141e-01	ci right 1.242745e-01	k: 8528	n:70000
Cons ci ratio: 9.604674e-02	ci left: 2.212537e-02	ci right 2.437153e-02	k: 1626	n:70000
KS ci ratio: 1.376003e-02	ci left: 5.331975e-01	ci right 5.405994e-01	k: 37583	n:70000
HECA   70000 perm   14 sec   (4832 perm/sec)   p_kst 5.369000e-01   p_cons 2.322857e-02   p_joint 1.218286e-01

Outputting figure to mutsig2_images.part000000000077/HECA.3_1648_70000_0.5369_0.023229_0.12183.png
                gene_name: HECA
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 72 percent done.
HARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.297882e-02	ci left: 5.757708e-01	ci right 5.951794e-01	k: 5855	n:10000
Cons ci ratio: 5.127250e-02	ci left: 3.593329e-01	ci right 3.783435e-01	k: 3688	n:10000
KS ci ratio: 2.357332e-02	ci left: 7.256263e-01	ci right 7.430370e-01	k: 7344	n:10000
HARS   10000 perm   2 sec   (5599 perm/sec)   p_kst 7.344000e-01   p_cons 3.688000e-01   p_joint 5.855000e-01

Outputting figure to mutsig2_images.part000000000077/HARS.2_1582_10000_0.7344_0.3688_0.5855.png
                gene_name: HARS
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 74 percent done.
HAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.170919e-03	ci left: 9.866479e-01	ci right 9.908601e-01	k: 9889	n:10000
Cons ci ratio: 1.204417e-02	ci left: 9.081279e-01	ci right 9.192297e-01	k: 9138	n:10000
KS ci ratio: 4.170919e-03	ci left: 9.866479e-01	ci right 9.908601e-01	k: 9889	n:10000
HAT1   10000 perm   2 sec   (5644 perm/sec)   p_kst 9.889000e-01   p_cons 9.138000e-01   p_joint 9.889000e-01

Outputting figure to mutsig2_images.part000000000077/HAT1.2_1304_10000_0.9889_0.9138_0.9889.png
                gene_name: HAT1
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 76 percent done.
HAUS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.868797e-02	ci left: 4.966503e-01	ci right 5.163459e-01	k: 5065	n:10000
Cons ci ratio: 4.933629e-02	ci left: 3.773383e-01	ci right 3.965276e-01	k: 3869	n:10000
KS ci ratio: 7.287598e-02	ci left: 2.161558e-01	ci right 2.326051e-01	k: 2243	n:10000
HAUS1   10000 perm   2 sec   (6479 perm/sec)   p_kst 2.243000e-01   p_cons 3.869000e-01   p_joint 5.065000e-01

Outputting figure to mutsig2_images.part000000000077/HAUS1.2_873_10000_0.2243_0.3869_0.5065.png
                gene_name: HAUS1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 78 percent done.
HAUS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.676153e-02	ci left: 5.221621e-01	ci right 5.418192e-01	k: 5320	n:10000
Cons ci ratio: 6.279685e-02	ci left: 2.715119e-01	ci right 2.892162e-01	k: 2803	n:10000
KS ci ratio: 1.194462e-02	ci left: 9.094652e-01	ci right 9.204916e-01	k: 9151	n:10000
HAUS5   10000 perm   2 sec   (5961 perm/sec)   p_kst 9.151000e-01   p_cons 2.803000e-01   p_joint 5.320000e-01

Outputting figure to mutsig2_images.part000000000077/HAUS5.2_1978_10000_0.9151_0.2803_0.532.png
                gene_name: HAUS5
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 79 percent done.
HAUS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.425481e-01	ci left: 6.526833e-02	ci right 7.538371e-02	k: 702	n:10000
Cons ci ratio: 3.144643e-01	ci left: 1.289402e-02	ci right 1.779424e-02	k: 152	n:10000
KS ci ratio: 2.727293e-02	ci left: 6.645117e-01	ci right 6.829870e-01	k: 6738	n:10000
HAUS8   10000 perm   2 sec   (5255 perm/sec)   p_kst 6.738000e-01   p_cons 1.520000e-02   p_joint 7.020000e-02

Joint ci ratio: 1.385177e-01	ci left: 3.582747e-02	ci right 4.120776e-02	k: 769	n:20000
Cons ci ratio: 2.153268e-01	ci left: 1.454332e-02	ci right 1.809931e-02	k: 325	n:20000
KS ci ratio: 1.892030e-02	ci left: 6.756455e-01	ci right 6.886015e-01	k: 13643	n:20000
HAUS8   20000 perm   4 sec   (5281 perm/sec)   p_kst 6.821500e-01   p_cons 1.625000e-02   p_joint 3.845000e-02

Joint ci ratio: 1.475034e-01	ci left: 2.130123e-02	ci right 2.472534e-02	k: 689	n:30000
Cons ci ratio: 1.805657e-01	ci left: 1.406885e-02	ci right 1.689278e-02	k: 463	n:30000
KS ci ratio: 1.547287e-02	ci left: 6.761605e-01	ci right 6.867377e-01	k: 20444	n:30000
HAUS8   30000 perm   6 sec   (5237 perm/sec)   p_kst 6.814667e-01   p_cons 1.543333e-02   p_joint 2.296667e-02

Joint ci ratio: 1.356493e-01	ci left: 1.906122e-02	ci right 2.185900e-02	k: 817	n:40000
Cons ci ratio: 1.541956e-01	ci left: 1.467284e-02	ci right 1.714816e-02	k: 635	n:40000
KS ci ratio: 1.334882e-02	ci left: 6.785399e-01	ci right 6.876835e-01	k: 27325	n:40000
HAUS8   40000 perm   8 sec   (5174 perm/sec)   p_kst 6.831250e-01   p_cons 1.587500e-02   p_joint 2.042500e-02

Joint ci ratio: 1.210570e-01	ci left: 1.929524e-02	ci right 2.180086e-02	k: 1026	n:50000
Cons ci ratio: 1.373041e-01	ci left: 1.493767e-02	ci right 1.715903e-02	k: 801	n:50000
KS ci ratio: 1.193752e-02	ci left: 6.791016e-01	ci right 6.872771e-01	k: 34160	n:50000
HAUS8   50000 perm   10 sec   (5096 perm/sec)   p_kst 6.832000e-01   p_cons 1.602000e-02   p_joint 2.052000e-02

Joint ci ratio: 1.063301e-01	ci left: 2.097100e-02	ci right 2.334220e-02	k: 1328	n:60000
Cons ci ratio: 1.251035e-01	ci left: 1.509190e-02	ci right 1.712197e-02	k: 965	n:60000
KS ci ratio: 1.087605e-02	ci left: 6.803130e-01	ci right 6.877692e-01	k: 41043	n:60000
HAUS8   60000 perm   12 sec   (5014 perm/sec)   p_kst 6.840500e-01   p_cons 1.608333e-02   p_joint 2.213333e-02

Joint ci ratio: 9.784735e-02	ci left: 2.131645e-02	ci right 2.352338e-02	k: 1568	n:70000
Cons ci ratio: 1.149966e-01	ci left: 1.538878e-02	ci right 1.728019e-02	k: 1142	n:70000
KS ci ratio: 1.008775e-02	ci left: 6.797962e-01	ci right 6.867029e-01	k: 47828	n:70000
HAUS8   70000 perm   15 sec   (4732 perm/sec)   p_kst 6.832571e-01   p_cons 1.631429e-02   p_joint 2.240000e-02

Joint ci ratio: 9.153162e-02	ci left: 2.138566e-02	ci right 2.344917e-02	k: 1792	n:80000
Cons ci ratio: 1.077494e-01	ci left: 1.539736e-02	ci right 1.716297e-02	k: 1301	n:80000
KS ci ratio: 9.435303e-03	ci left: 6.800636e-01	ci right 6.865231e-01	k: 54664	n:80000
HAUS8   80000 perm   17 sec   (4640 perm/sec)   p_kst 6.833000e-01   p_cons 1.626250e-02   p_joint 2.240000e-02

Joint ci ratio: 8.658549e-02	ci left: 2.130168e-02	ci right 2.324039e-02	k: 2003	n:90000
Cons ci ratio: 1.020039e-01	ci left: 1.532029e-02	ci right 1.697777e-02	k: 1452	n:90000
KS ci ratio: 8.913286e-03	ci left: 6.793917e-01	ci right 6.854855e-01	k: 61420	n:90000
HAUS8   90000 perm   20 sec   (4583 perm/sec)   p_kst 6.824444e-01   p_cons 1.613333e-02   p_joint 2.225556e-02

Joint ci ratio: 8.933607e-02	ci left: 1.804543e-02	ci right 1.974264e-02	k: 1888	n:100000
Cons ci ratio: 9.727417e-02	ci left: 1.520209e-02	ci right 1.676616e-02	k: 1597	n:100000
KS ci ratio: 8.457344e-03	ci left: 6.794743e-01	ci right 6.852552e-01	k: 68237	n:100000
HAUS8   100000 perm   22 sec   (4519 perm/sec)   p_kst 6.823700e-01   p_cons 1.597000e-02   p_joint 1.888000e-02

Outputting figure to mutsig2_images.part000000000077/HAUS8.2_1277_100000_0.68237_0.01597_0.01888.png
                gene_name: HAUS8
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 81 percent done.
HAVCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.019158e-03	ci left: 9.453375e-01	ci right 9.539982e-01	k: 9498	n:10000
KS ci ratio: 1.547546e-02	ci left: 8.583501e-01	ci right 8.718364e-01	k: 8652	n:10000
HAVCR1   10000 perm   2 sec   (6084 perm/sec)   p_kst 8.652000e-01   p_cons 9.498000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HAVCR1.2_1127_10000_0.8652_0.9498_1.png
                gene_name: HAVCR1
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
HBS1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.941074e-02	ci left: 7.951683e-01	ci right 8.108548e-01	k: 8031	n:10000
Cons ci ratio: 1.347312e-02	ci left: 8.882113e-01	ci right 9.003580e-01	k: 8944	n:10000
KS ci ratio: 3.020604e-02	ci left: 6.178376e-01	ci right 6.368881e-01	k: 6274	n:10000
HBS1L   10000 perm   2 sec   (5802 perm/sec)   p_kst 6.274000e-01   p_cons 8.944000e-01   p_joint 8.031000e-01

Outputting figure to mutsig2_images.part000000000077/HBS1L.2_3600_10000_0.6274_0.8944_0.8031.png
                gene_name: HBS1L
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 84 percent done.
HBXIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.155899e-01	ci left: 2.854258e-02	ci right 3.553353e-02	k: 319	n:10000
Cons ci ratio: 3.198132e-01	ci left: 1.243336e-02	ci right 1.725533e-02	k: 147	n:10000
KS ci ratio: 1.030980e-01	ci left: 1.197510e-01	ci right 1.328675e-01	k: 1262	n:10000
HBXIP   10000 perm   1 sec   (7122 perm/sec)   p_kst 1.262000e-01   p_cons 1.470000e-02   p_joint 3.190000e-02

Joint ci ratio: 1.541997e-01	ci left: 2.888197e-02	ci right 3.375555e-02	k: 625	n:20000
Cons ci ratio: 2.257608e-01	ci left: 1.317232e-02	ci right 1.657086e-02	k: 296	n:20000
KS ci ratio: 7.150001e-02	ci left: 1.259590e-01	ci right 1.353487e-01	k: 2612	n:20000
HBXIP   20000 perm   3 sec   (6268 perm/sec)   p_kst 1.306000e-01   p_cons 1.480000e-02   p_joint 3.125000e-02

Joint ci ratio: 1.850737e-01	ci left: 1.336863e-02	ci right 1.612652e-02	k: 441	n:30000
Cons ci ratio: 1.913204e-01	ci left: 1.247871e-02	ci right 1.515000e-02	k: 413	n:30000
KS ci ratio: 5.840986e-02	ci left: 1.267075e-01	ci right 1.343642e-01	k: 3915	n:30000
HBXIP   30000 perm   5 sec   (5942 perm/sec)   p_kst 1.305000e-01   p_cons 1.376667e-02   p_joint 1.470000e-02

Joint ci ratio: 1.232885e-01	ci left: 2.312831e-02	ci right 2.619122e-02	k: 985	n:40000
Cons ci ratio: 1.628698e-01	ci left: 1.311139e-02	ci right 1.545990e-02	k: 570	n:40000
KS ci ratio: 5.061430e-02	ci left: 1.270897e-01	ci right 1.337141e-01	k: 5215	n:40000
HBXIP   40000 perm   7 sec   (5725 perm/sec)   p_kst 1.303750e-01   p_cons 1.425000e-02   p_joint 2.462500e-02

Joint ci ratio: 1.022044e-01	ci left: 2.711743e-02	ci right 3.005764e-02	k: 1428	n:50000
Cons ci ratio: 1.440213e-01	ci left: 1.354762e-02	ci right 1.566929e-02	k: 729	n:50000
KS ci ratio: 4.513961e-02	ci left: 1.280937e-01	ci right 1.340292e-01	k: 6552	n:50000
HBXIP   50000 perm   9 sec   (5573 perm/sec)   p_kst 1.310400e-01   p_cons 1.458000e-02   p_joint 2.856000e-02

Joint ci ratio: 8.708488e-02	ci left: 3.124229e-02	ci right 3.410315e-02	k: 1959	n:60000
Cons ci ratio: 1.317787e-01	ci left: 1.357483e-02	ci right 1.550588e-02	k: 871	n:60000
KS ci ratio: 4.103152e-02	ci left: 1.293176e-01	ci right 1.347514e-01	k: 7921	n:60000
HBXIP   60000 perm   11 sec   (5435 perm/sec)   p_kst 1.320167e-01   p_cons 1.451667e-02   p_joint 3.265000e-02

Joint ci ratio: 8.558051e-02	ci left: 2.785324e-02	ci right 3.035743e-02	k: 2036	n:70000
Cons ci ratio: 1.217205e-01	ci left: 1.371061e-02	ci right 1.550138e-02	k: 1021	n:70000
KS ci ratio: 3.799100e-02	ci left: 1.295006e-01	ci right 1.345299e-01	k: 9240	n:70000
HBXIP   70000 perm   13 sec   (5282 perm/sec)   p_kst 1.320000e-01   p_cons 1.458571e-02   p_joint 2.908571e-02

Joint ci ratio: 7.533347e-02	ci left: 3.150285e-02	ci right 3.398119e-02	k: 2618	n:80000
Cons ci ratio: 1.142070e-01	ci left: 1.368304e-02	ci right 1.535244e-02	k: 1160	n:80000
KS ci ratio: 3.550858e-02	ci left: 1.298476e-01	ci right 1.345541e-01	k: 10575	n:80000
HBXIP   80000 perm   16 sec   (4973 perm/sec)   p_kst 1.321875e-01   p_cons 1.450000e-02   p_joint 3.272500e-02

Joint ci ratio: 7.556423e-02	ci left: 2.793514e-02	ci right 3.013980e-02	k: 2612	n:90000
Cons ci ratio: 1.076807e-01	ci left: 1.372914e-02	ci right 1.530238e-02	k: 1305	n:90000
KS ci ratio: 3.356239e-02	ci left: 1.294088e-01	ci right 1.338372e-01	k: 11845	n:90000
HBXIP   90000 perm   19 sec   (4835 perm/sec)   p_kst 1.316111e-01   p_cons 1.450000e-02   p_joint 2.902222e-02

Joint ci ratio: 7.167808e-02	ci left: 2.799810e-02	ci right 3.008934e-02	k: 2903	n:100000
Cons ci ratio: 1.012772e-01	ci left: 1.401193e-02	ci right 1.551640e-02	k: 1475	n:100000
KS ci ratio: 3.188225e-02	ci left: 1.292224e-01	ci right 1.334190e-01	k: 13131	n:100000
HBXIP   100000 perm   21 sec   (4716 perm/sec)   p_kst 1.313100e-01   p_cons 1.475000e-02   p_joint 2.903000e-02

Joint ci ratio: 7.932464e-02	ci left: 2.085597e-02	ci right 2.258756e-02	k: 2388	n:110000
Cons ci ratio: 9.640150e-02	ci left: 1.409468e-02	ci right 1.553106e-02	k: 1628	n:110000
KS ci ratio: 3.040121e-02	ci left: 1.293004e-01	ci right 1.333009e-01	k: 14442	n:110000
HBXIP   110000 perm   24 sec   (4654 perm/sec)   p_kst 1.312909e-01   p_cons 1.480000e-02   p_joint 2.170909e-02

Outputting figure to mutsig2_images.part000000000077/HBXIP.2_538_110000_0.13129_0.0148_0.021709.png
                gene_name: HBXIP
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 86 percent done.
HCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.003189e-02	ci left: 6.205509e-01	ci right 6.395732e-01	k: 6301	n:10000
Cons ci ratio: 5.247176e-02	ci left: 3.486956e-01	ci right 3.675871e-01	k: 3581	n:10000
KS ci ratio: 4.542018e-02	ci left: 4.170783e-01	ci right 4.365644e-01	k: 4268	n:10000
HCK   10000 perm   2 sec   (6311 perm/sec)   p_kst 4.268000e-01   p_cons 3.581000e-01   p_joint 6.301000e-01

Outputting figure to mutsig2_images.part000000000077/HCK.2_1639_10000_0.4268_0.3581_0.6301.png
                gene_name: HCK
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 88 percent done.
HDAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.463711e-02	ci left: 5.517079e-01	ci right 5.712563e-01	k: 5615	n:10000
KS ci ratio: 2.600354e-02	ci left: 6.852655e-01	ci right 7.034211e-01	k: 6944	n:10000
HDAC1   10000 perm   2 sec   (6059 perm/sec)   p_kst 6.944000e-01   p_cons 5.615000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000077/HDAC1.2_1505_10000_0.6944_0.5615_1.png
                gene_name: HDAC1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
HDAC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.965300e-02	ci left: 6.264811e-01	ci right 6.454396e-01	k: 6360	n:10000
Cons ci ratio: 5.290821e-02	ci left: 3.449190e-01	ci right 3.637659e-01	k: 3543	n:10000
KS ci ratio: 1.707822e-02	ci left: 8.331748e-01	ci right 8.476263e-01	k: 8405	n:10000
HDAC2   10000 perm   2 sec   (5754 perm/sec)   p_kst 8.405000e-01   p_cons 3.543000e-01   p_joint 6.360000e-01

Outputting figure to mutsig2_images.part000000000077/HDAC2.2_1523_10000_0.8405_0.3543_0.636.png
                gene_name: HDAC2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 91 percent done.
HDAC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.174385e-02	ci left: 9.121411e-01	ci right 9.230142e-01	k: 9177	n:10000
Cons ci ratio: 6.565505e-03	ci left: 9.694208e-01	ci right 9.758999e-01	k: 9728	n:10000
KS ci ratio: 1.367182e-02	ci left: 8.853423e-01	ci right 8.976286e-01	k: 8916	n:10000
HDAC3   10000 perm   2 sec   (6142 perm/sec)   p_kst 8.916000e-01   p_cons 9.728000e-01   p_joint 9.177000e-01

Outputting figure to mutsig2_images.part000000000077/HDAC3.2_1347_10000_0.8916_0.9728_0.9177.png
                gene_name: HDAC3
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 93 percent done.
HDAC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.427666e-01	ci left: 6.507499e-02	ci right 7.517717e-02	k: 700	n:10000
Cons ci ratio: 4.284305e-02	ci left: 4.458030e-01	ci right 4.654229e-01	k: 4556	n:10000
KS ci ratio: 4.846095e-01	ci left: 4.932166e-03	ci right 8.165407e-03	k: 64	n:10000
HDAC5   10000 perm   2 sec   (5883 perm/sec)   p_kst 6.400000e-03   p_cons 4.556000e-01   p_joint 7.000000e-02

Joint ci ratio: 1.285902e-01	ci left: 4.153824e-02	ci right 4.729516e-02	k: 887	n:20000
Cons ci ratio: 3.067241e-02	ci left: 4.425887e-01	ci right 4.564260e-01	k: 8990	n:20000
KS ci ratio: 3.349842e-01	ci left: 5.662386e-03	ci right 7.984485e-03	k: 135	n:20000
HDAC5   20000 perm   4 sec   (5235 perm/sec)   p_kst 6.750000e-03   p_cons 4.495000e-01   p_joint 4.435000e-02

Joint ci ratio: 6.456221e-02	ci left: 1.058891e-01	ci right 1.129867e-01	k: 3282	n:30000
Cons ci ratio: 2.504294e-02	ci left: 4.438927e-01	ci right 4.551837e-01	k: 13486	n:30000
KS ci ratio: 2.819903e-01	ci left: 5.498039e-03	ci right 7.332854e-03	k: 191	n:30000
HDAC5   30000 perm   6 sec   (4974 perm/sec)   p_kst 6.366667e-03   p_cons 4.495333e-01   p_joint 1.094000e-01

Joint ci ratio: 7.203696e-02	ci left: 6.643672e-02	ci right 7.142608e-02	k: 2756	n:40000
Cons ci ratio: 2.161634e-02	ci left: 4.462897e-01	ci right 4.560674e-01	k: 18047	n:40000
KS ci ratio: 2.517445e-01	ci left: 5.266731e-03	ci right 6.806308e-03	k: 240	n:40000
HDAC5   40000 perm   9 sec   (4637 perm/sec)   p_kst 6.000000e-03   p_cons 4.511750e-01   p_joint 6.890000e-02

Joint ci ratio: 6.392784e-02	ci left: 6.769978e-02	ci right 7.219031e-02	k: 3496	n:50000
Cons ci ratio: 1.932952e-02	ci left: 4.469312e-01	ci right 4.556745e-01	k: 22565	n:50000
KS ci ratio: 2.226715e-01	ci left: 5.474083e-03	ci right 6.864189e-03	k: 307	n:50000
HDAC5   50000 perm   11 sec   (4560 perm/sec)   p_kst 6.140000e-03   p_cons 4.513000e-01   p_joint 6.992000e-02

Joint ci ratio: 5.841335e-02	ci left: 6.777364e-02	ci right 7.186808e-02	k: 4188	n:60000
Cons ci ratio: 1.762528e-02	ci left: 4.478786e-01	ci right 4.558594e-01	k: 27112	n:60000
KS ci ratio: 2.031601e-01	ci left: 5.540088e-03	ci right 6.808392e-03	k: 369	n:60000
HDAC5   60000 perm   13 sec   (4486 perm/sec)   p_kst 6.150000e-03   p_cons 4.518667e-01   p_joint 6.980000e-02

Joint ci ratio: 5.401004e-02	ci left: 6.809237e-02	ci right 7.188622e-02	k: 4898	n:70000
Cons ci ratio: 1.631728e-02	ci left: 4.481938e-01	ci right 4.555816e-01	k: 31632	n:70000
KS ci ratio: 1.884563e-01	ci left: 5.563822e-03	ci right 6.734825e-03	k: 429	n:70000
HDAC5   70000 perm   16 sec   (4351 perm/sec)   p_kst 6.128571e-03   p_cons 4.518857e-01   p_joint 6.997143e-02

Joint ci ratio: 5.065744e-02	ci left: 6.787072e-02	ci right 7.141057e-02	k: 5570	n:80000
Cons ci ratio: 1.525455e-02	ci left: 4.487217e-01	ci right 4.556318e-01	k: 36174	n:80000
KS ci ratio: 1.767248e-01	ci left: 5.572164e-03	ci right 6.664118e-03	k: 488	n:80000
HDAC5   80000 perm   19 sec   (4292 perm/sec)   p_kst 6.100000e-03   p_cons 4.521750e-01   p_joint 6.962500e-02

Joint ci ratio: 4.759879e-02	ci left: 6.840732e-02	ci right 7.175378e-02	k: 6306	n:90000
Cons ci ratio: 1.436082e-02	ci left: 4.496550e-01	ci right 4.561702e-01	k: 40762	n:90000
KS ci ratio: 1.660306e-01	ci left: 5.644318e-03	ci right 6.676790e-03	k: 553	n:90000
HDAC5   90000 perm   21 sec   (4244 perm/sec)   p_kst 6.144444e-03   p_cons 4.529111e-01   p_joint 7.006667e-02

Joint ci ratio: 4.504838e-02	ci left: 6.880213e-02	ci right 7.198285e-02	k: 7038	n:100000
Cons ci ratio: 1.362392e-02	ci left: 4.498212e-01	ci right 4.560015e-01	k: 45291	n:100000
KS ci ratio: 1.558075e-01	ci left: 5.799743e-03	ci right 6.789221e-03	k: 628	n:100000
HDAC5   100000 perm   24 sec   (4191 perm/sec)   p_kst 6.280000e-03   p_cons 4.529100e-01   p_joint 7.038000e-02

Joint ci ratio: 4.282092e-02	ci left: 6.927305e-02	ci right 7.231326e-02	k: 7786	n:110000
Cons ci ratio: 1.298375e-02	ci left: 4.502004e-01	ci right 4.560930e-01	k: 49846	n:110000
KS ci ratio: 1.476892e-01	ci left: 5.893473e-03	ci right 6.841927e-03	k: 699	n:110000
HDAC5   110000 perm   27 sec   (4111 perm/sec)   p_kst 6.354545e-03   p_cons 4.531455e-01   p_joint 7.078182e-02

Joint ci ratio: 4.099769e-02	ci left: 6.933850e-02	ci right 7.224895e-02	k: 8494	n:120000
Cons ci ratio: 1.244700e-02	ci left: 4.496892e-01	ci right 4.553298e-01	k: 54301	n:120000
KS ci ratio: 1.406288e-01	ci left: 5.980736e-03	ci right 6.893363e-03	k: 771	n:120000
HDAC5   120000 perm   30 sec   (4064 perm/sec)   p_kst 6.425000e-03   p_cons 4.525083e-01   p_joint 7.078333e-02

Joint ci ratio: 3.352193e-02	ci left: 9.357925e-02	ci right 9.677729e-02	k: 12372	n:130000
Cons ci ratio: 1.195427e-02	ci left: 4.499838e-01	ci right 4.554030e-01	k: 58850	n:130000
KS ci ratio: 1.356296e-01	ci left: 5.951411e-03	ci right 6.824673e-03	k: 829	n:130000
HDAC5   130000 perm   32 sec   (4015 perm/sec)   p_kst 6.376923e-03   p_cons 4.526923e-01   p_joint 9.516923e-02

Joint ci ratio: 3.791295e-02	ci left: 6.959630e-02	ci right 7.229294e-02	k: 9931	n:140000
Cons ci ratio: 1.151560e-02	ci left: 4.502471e-01	ci right 4.554691e-01	k: 63400	n:140000
KS ci ratio: 1.304646e-01	ci left: 5.988963e-03	ci right 6.831676e-03	k: 896	n:140000
HDAC5   140000 perm   36 sec   (3938 perm/sec)   p_kst 6.400000e-03   p_cons 4.528571e-01   p_joint 7.093571e-02

Joint ci ratio: 3.665415e-02	ci left: 6.954663e-02	ci right 7.214998e-02	k: 10626	n:150000
Cons ci ratio: 1.111445e-02	ci left: 4.508117e-01	ci right 4.558568e-01	k: 68000	n:150000
KS ci ratio: 1.264434e-01	ci left: 5.963936e-03	ci right 6.775322e-03	k: 954	n:150000
HDAC5   150000 perm   39 sec   (3819 perm/sec)   p_kst 6.360000e-03   p_cons 4.533333e-01   p_joint 7.084000e-02

Joint ci ratio: 3.550957e-02	ci left: 6.951689e-02	ci right 7.203619e-02	k: 11323	n:160000
Cons ci ratio: 1.076185e-02	ci left: 4.508772e-01	ci right 4.557620e-01	k: 72531	n:160000
KS ci ratio: 1.223477e-01	ci left: 5.984804e-03	ci right 6.770744e-03	k: 1019	n:160000
HDAC5   160000 perm   43 sec   (3721 perm/sec)   p_kst 6.368750e-03   p_cons 4.533187e-01   p_joint 7.076875e-02

Joint ci ratio: 3.447673e-02	ci left: 6.945091e-02	ci right 7.189316e-02	k: 12013	n:170000
Cons ci ratio: 1.044774e-02	ci left: 4.506081e-01	ci right 4.553465e-01	k: 77006	n:170000
KS ci ratio: 1.190685e-01	ci left: 5.957922e-03	ci right 6.717885e-03	k: 1076	n:170000
HDAC5   170000 perm   46 sec   (3664 perm/sec)   p_kst 6.329412e-03   p_cons 4.529765e-01   p_joint 7.066471e-02

Joint ci ratio: 3.345121e-02	ci left: 6.969641e-02	ci right 7.207299e-02	k: 12758	n:180000
Cons ci ratio: 1.015222e-02	ci left: 4.507317e-01	ci right 4.553365e-01	k: 81546	n:180000
KS ci ratio: 1.156298e-01	ci left: 5.977442e-03	ci right 6.716371e-03	k: 1141	n:180000
HDAC5   180000 perm   50 sec   (3628 perm/sec)   p_kst 6.338889e-03   p_cons 4.530333e-01   p_joint 7.087778e-02

Joint ci ratio: 3.253152e-02	ci left: 6.983867e-02	ci right 7.215339e-02	k: 13488	n:190000
Cons ci ratio: 9.875927e-03	ci left: 4.510702e-01	ci right 4.555523e-01	k: 86129	n:190000
KS ci ratio: 1.123324e-01	ci left: 6.010537e-03	ci right 6.730964e-03	k: 1209	n:190000
HDAC5   190000 perm   53 sec   (3588 perm/sec)   p_kst 6.363158e-03   p_cons 4.533105e-01   p_joint 7.098947e-02

Joint ci ratio: 3.175229e-02	ci left: 6.968459e-02	ci right 7.193787e-02	k: 14161	n:200000
Cons ci ratio: 9.629859e-03	ci left: 4.509215e-01	ci right 4.552898e-01	k: 90621	n:200000
KS ci ratio: 1.099532e-01	ci left: 5.967636e-03	ci right 6.666789e-03	k: 1262	n:200000
HDAC5   200000 perm   56 sec   (3546 perm/sec)   p_kst 6.310000e-03   p_cons 4.531050e-01   p_joint 7.080500e-02

Joint ci ratio: 3.099840e-02	ci left: 6.966399e-02	ci right 7.186216e-02	k: 14859	n:210000
Cons ci ratio: 9.391651e-03	ci left: 4.512976e-01	ci right 4.555608e-01	k: 95220	n:210000
KS ci ratio: 1.071875e-01	ci left: 5.989218e-03	ci right 6.672136e-03	k: 1328	n:210000
HDAC5   210000 perm   60 sec   (3503 perm/sec)   p_kst 6.323810e-03   p_cons 4.534286e-01   p_joint 7.075714e-02

Joint ci ratio: 3.031885e-02	ci left: 6.954654e-02	ci right 7.169206e-02	k: 15535	n:220000
Cons ci ratio: 9.170787e-03	ci left: 4.516135e-01	ci right 4.557787e-01	k: 99813	n:220000
KS ci ratio: 1.048476e-01	ci left: 5.982475e-03	ci right 6.648815e-03	k: 1388	n:220000
HDAC5   220000 perm   64 sec   (3464 perm/sec)   p_kst 6.309091e-03   p_cons 4.536955e-01   p_joint 7.061364e-02

Joint ci ratio: 2.966341e-02	ci left: 6.952184e-02	ci right 7.161943e-02	k: 16230	n:230000
Cons ci ratio: 8.966925e-03	ci left: 4.517855e-01	ci right 4.558592e-01	k: 104379	n:230000
KS ci ratio: 1.023706e-01	ci left: 6.010363e-03	ci right 6.663042e-03	k: 1456	n:230000
HDAC5   230000 perm   67 sec   (3425 perm/sec)   p_kst 6.330435e-03   p_cons 4.538217e-01   p_joint 7.056522e-02

Joint ci ratio: 2.907645e-02	ci left: 6.937550e-02	ci right 7.142656e-02	k: 16895	n:240000
Cons ci ratio: 8.781909e-03	ci left: 4.516151e-01	ci right 4.556027e-01	k: 108866	n:240000
KS ci ratio: 1.005937e-01	ci left: 5.971092e-03	ci right 6.607587e-03	k: 1508	n:240000
HDAC5   240000 perm   71 sec   (3385 perm/sec)   p_kst 6.283333e-03   p_cons 4.536083e-01   p_joint 7.039583e-02

Joint ci ratio: 2.852737e-02	ci left: 6.922138e-02	ci right 7.122860e-02	k: 17555	n:250000
Cons ci ratio: 8.606778e-03	ci left: 4.515231e-01	ci right 4.554300e-01	k: 113369	n:250000
KS ci ratio: 9.865217e-02	ci left: 5.966268e-03	ci right 6.589262e-03	k: 1568	n:250000
HDAC5   250000 perm   75 sec   (3347 perm/sec)   p_kst 6.272000e-03   p_cons 4.534760e-01   p_joint 7.022000e-02

Outputting figure to mutsig2_images.part000000000077/HDAC5.2_3476_250000_0.006272_0.45348_0.07022.png
                gene_name: HDAC5
               theta_stop: 0.099 
                    nperm: 250000 
                     p_ks: 0.0063 
        ci_ks_bounds_left: 0.0060 
       ci_ks_bounds_right: 0.0066 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.071 

Current progress: 95 percent done.
HDHD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.450511e-02	ci left: 7.100773e-01	ci right 7.277950e-01	k: 7190	n:10000
Cons ci ratio: 2.450511e-02	ci left: 7.100773e-01	ci right 7.277950e-01	k: 7190	n:10000
KS ci ratio: 5.515566e-02	ci left: 3.262447e-01	ci right 3.448511e-01	k: 3355	n:10000
HDHD3   10000 perm   2 sec   (5804 perm/sec)   p_kst 3.355000e-01   p_cons 7.190000e-01   p_joint 7.190000e-01

Outputting figure to mutsig2_images.part000000000077/HDHD3.2_760_10000_0.3355_0.719_0.719.png
                gene_name: HDHD3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 97 percent done.
HEATR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.327604e-02	ci left: 2.142811e-01	ci right 2.306809e-01	k: 2224	n:10000
Cons ci ratio: 8.363681e-02	ci left: 1.725141e-01	ci right 1.876728e-01	k: 1800	n:10000
KS ci ratio: 8.588454e-02	ci left: 1.649446e-01	ci right 1.798468e-01	k: 1723	n:10000
HEATR2   10000 perm   2 sec   (5359 perm/sec)   p_kst 1.723000e-01   p_cons 1.800000e-01   p_joint 2.224000e-01

Outputting figure to mutsig2_images.part000000000077/HEATR2.2_2620_10000_0.1723_0.18_0.2224.png
                gene_name: HEATR2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 98 percent done.
HEATR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.791669e-01	ci left: 8.397740e-04	ci right 2.472817e-03	k: 15	n:10000
Cons ci ratio: 5.319759e-01	ci left: 3.972510e-03	ci right 6.926868e-03	k: 53	n:10000
KS ci ratio: 6.992814e-02	ci left: 2.306682e-01	ci right 2.474840e-01	k: 2390	n:10000
HEATR6   10000 perm   2 sec   (5630 perm/sec)   p_kst 2.390000e-01   p_cons 5.300000e-03   p_joint 1.500000e-03

Joint ci ratio: 2.070849e-01	ci left: 1.577558e-02	ci right 1.946657e-02	k: 351	n:20000
Cons ci ratio: 3.644804e-01	ci left: 4.704030e-03	ci right 6.843509e-03	k: 114	n:20000
KS ci ratio: 4.882997e-02	ci left: 2.377131e-01	ci right 2.496615e-01	k: 4873	n:20000
HEATR6   20000 perm   4 sec   (4834 perm/sec)   p_kst 2.436500e-01   p_cons 5.700000e-03   p_joint 1.755000e-02

Joint ci ratio: 4.646599e-01	ci left: 1.819386e-03	ci right 2.947120e-03	k: 70	n:30000
Cons ci ratio: 3.130289e-01	ci left: 4.386948e-03	ci right 6.044432e-03	k: 155	n:30000
KS ci ratio: 4.003617e-02	ci left: 2.372944e-01	ci right 2.470223e-01	k: 7264	n:30000
HEATR6   30000 perm   6 sec   (4735 perm/sec)   p_kst 2.421333e-01   p_cons 5.166667e-03   p_joint 2.333333e-03

Joint ci ratio: 9.658623e-02	ci left: 3.763659e-02	ci right 4.148062e-02	k: 1581	n:40000
Cons ci ratio: 2.623588e-01	ci left: 4.822176e-03	ci right 6.300997e-03	k: 221	n:40000
KS ci ratio: 3.460561e-02	ci left: 2.386541e-01	ci right 2.470833e-01	k: 9714	n:40000
HEATR6   40000 perm   9 sec   (4646 perm/sec)   p_kst 2.428500e-01   p_cons 5.525000e-03   p_joint 3.952500e-02

Joint ci ratio: 3.381790e-01	ci left: 2.227623e-03	ci right 3.151624e-03	k: 133	n:50000
Cons ci ratio: 2.353018e-01	ci left: 4.870588e-03	ci right 6.187821e-03	k: 275	n:50000
KS ci ratio: 3.079607e-02	ci left: 2.409565e-01	ci right 2.485131e-01	k: 12236	n:50000
HEATR6   50000 perm   11 sec   (4561 perm/sec)   p_kst 2.447200e-01   p_cons 5.500000e-03   p_joint 2.660000e-03

Joint ci ratio: 3.218217e-01	ci left: 2.070336e-03	ci right 2.878991e-03	k: 147	n:60000
Cons ci ratio: 2.202846e-01	ci left: 4.671711e-03	ci right 5.843595e-03	k: 314	n:60000
KS ci ratio: 2.814889e-02	ci left: 2.408163e-01	ci right 2.477084e-01	k: 14655	n:60000
HEATR6   60000 perm   13 sec   (4484 perm/sec)   p_kst 2.442500e-01   p_cons 5.233333e-03   p_joint 2.450000e-03

Joint ci ratio: 2.994014e-01	ci left: 2.077566e-03	ci right 2.821779e-03	k: 170	n:70000
Cons ci ratio: 2.010765e-01	ci left: 4.856971e-03	ci right 5.956068e-03	k: 377	n:70000
KS ci ratio: 2.610088e-02	ci left: 2.405090e-01	ci right 2.468837e-01	k: 17058	n:70000
HEATR6   70000 perm   16 sec   (4411 perm/sec)   p_kst 2.436857e-01   p_cons 5.385714e-03   p_joint 2.428571e-03

Joint ci ratio: 3.977718e-01	ci left: 9.721086e-04	ci right 1.465211e-03	k: 96	n:80000
Cons ci ratio: 1.898657e-01	ci left: 4.796712e-03	ci right 5.814670e-03	k: 423	n:80000
KS ci ratio: 2.441681e-02	ci left: 2.406908e-01	ci right 2.466528e-01	k: 19493	n:80000
HEATR6   80000 perm   18 sec   (4343 perm/sec)   p_kst 2.436625e-01   p_cons 5.287500e-03   p_joint 1.200000e-03

Joint ci ratio: 3.787333e-01	ci left: 9.643656e-04	ci right 1.424313e-03	k: 106	n:90000
Cons ci ratio: 1.751718e-01	ci left: 5.048509e-03	ci right 6.028220e-03	k: 497	n:90000
KS ci ratio: 2.303133e-02	ci left: 2.406877e-01	ci right 2.463067e-01	k: 21914	n:90000
HEATR6   90000 perm   21 sec   (4241 perm/sec)   p_kst 2.434889e-01   p_cons 5.522222e-03   p_joint 1.177778e-03

Joint ci ratio: 3.669305e-01	ci left: 9.313678e-04	ci right 1.358416e-03	k: 113	n:100000
Cons ci ratio: 1.687048e-01	ci left: 4.916849e-03	ci right 5.832201e-03	k: 536	n:100000
KS ci ratio: 2.186368e-02	ci left: 2.405933e-01	ci right 2.459216e-01	k: 24325	n:100000
HEATR6   100000 perm   24 sec   (4161 perm/sec)   p_kst 2.432500e-01   p_cons 5.360000e-03   p_joint 1.130000e-03

Joint ci ratio: 3.561660e-01	ci left: 9.045523e-04	ci right 1.304321e-03	k: 120	n:110000
Cons ci ratio: 1.617789e-01	ci left: 4.879463e-03	ci right 5.746934e-03	k: 583	n:110000
KS ci ratio: 2.086712e-02	ci left: 2.403499e-01	ci right 2.454273e-01	k: 26717	n:110000
HEATR6   110000 perm   27 sec   (4083 perm/sec)   p_kst 2.428818e-01   p_cons 5.300000e-03   p_joint 1.090909e-03

Joint ci ratio: 3.347156e-01	ci left: 9.509533e-04	ci right 1.340467e-03	k: 136	n:120000
Cons ci ratio: 1.555174e-01	ci left: 4.856959e-03	ci right 5.683893e-03	k: 631	n:120000
KS ci ratio: 1.996153e-02	ci left: 2.407747e-01	ci right 2.456377e-01	k: 29184	n:120000
HEATR6   120000 perm   30 sec   (4016 perm/sec)   p_kst 2.432000e-01   p_cons 5.258333e-03   p_joint 1.133333e-03

Joint ci ratio: 3.188185e-01	ci left: 9.766687e-04	ci right 1.353843e-03	k: 150	n:130000
Cons ci ratio: 1.482955e-01	ci left: 4.949566e-03	ci right 5.749665e-03	k: 694	n:130000
KS ci ratio: 1.919449e-02	ci left: 2.405631e-01	ci right 2.452330e-01	k: 31576	n:130000
HEATR6   130000 perm   33 sec   (3950 perm/sec)   p_kst 2.428923e-01   p_cons 5.338462e-03   p_joint 1.153846e-03

Joint ci ratio: 3.049906e-01	ci left: 9.990852e-04	ci right 1.364936e-03	k: 164	n:140000
Cons ci ratio: 1.434282e-01	ci left: 4.926367e-03	ci right 5.694340e-03	k: 742	n:140000
KS ci ratio: 1.851318e-02	ci left: 2.403137e-01	ci right 2.448113e-01	k: 33958	n:140000
HEATR6   140000 perm   36 sec   (3889 perm/sec)   p_kst 2.425571e-01   p_cons 5.300000e-03   p_joint 1.171429e-03

Joint ci ratio: 2.995980e-01	ci left: 9.694437e-04	ci right 1.316969e-03	k: 170	n:150000
Cons ci ratio: 1.392765e-01	ci left: 4.887327e-03	ci right 5.625329e-03	k: 787	n:150000
KS ci ratio: 1.788759e-02	ci left: 2.403460e-01	ci right 2.446906e-01	k: 36377	n:150000
HEATR6   150000 perm   40 sec   (3794 perm/sec)   p_kst 2.425133e-01   p_cons 5.246667e-03   p_joint 1.133333e-03

Joint ci ratio: 2.896081e-01	ci left: 9.783133e-04	ci right 1.315183e-03	k: 182	n:160000
Cons ci ratio: 1.346554e-01	ci left: 4.913846e-03	ci right 5.629261e-03	k: 842	n:160000
KS ci ratio: 1.730433e-02	ci left: 2.407380e-01	ci right 2.449463e-01	k: 38854	n:160000
HEATR6   160000 perm   43 sec   (3741 perm/sec)   p_kst 2.428375e-01   p_cons 5.262500e-03   p_joint 1.137500e-03

Joint ci ratio: 2.805552e-01	ci left: 9.863088e-04	ci right 1.313439e-03	k: 194	n:170000
Cons ci ratio: 1.309800e-01	ci left: 4.897765e-03	ci right 5.589861e-03	k: 890	n:170000
KS ci ratio: 1.678537e-02	ci left: 2.408512e-01	ci right 2.449340e-01	k: 41291	n:170000
HEATR6   170000 perm   46 sec   (3672 perm/sec)   p_kst 2.428882e-01   p_cons 5.235294e-03   p_joint 1.141176e-03

Joint ci ratio: 2.749741e-01	ci left: 9.728621e-04	ci right 1.288004e-03	k: 202	n:180000
Cons ci ratio: 1.282784e-01	ci left: 4.829921e-03	ci right 5.497280e-03	k: 928	n:180000
KS ci ratio: 1.629742e-02	ci left: 2.412472e-01	ci right 2.452167e-01	k: 43781	n:180000
HEATR6   180000 perm   50 sec   (3623 perm/sec)   p_kst 2.432278e-01   p_cons 5.155556e-03   p_joint 1.122222e-03

Joint ci ratio: 2.671898e-01	ci left: 9.805257e-04	ci right 1.287653e-03	k: 214	n:190000
Cons ci ratio: 1.253469e-01	ci left: 4.799943e-03	ci right 5.446877e-03	k: 972	n:190000
KS ci ratio: 1.586418e-02	ci left: 2.412670e-01	ci right 2.451303e-01	k: 46207	n:190000
HEATR6   190000 perm   53 sec   (3574 perm/sec)   p_kst 2.431947e-01   p_cons 5.115789e-03   p_joint 1.126316e-03

Joint ci ratio: 2.583278e-01	ci left: 1.001562e-03	ci right 1.303196e-03	k: 229	n:200000
Cons ci ratio: 1.219465e-01	ci left: 4.826444e-03	ci right 5.458030e-03	k: 1027	n:200000
KS ci ratio: 1.545053e-02	ci left: 2.416003e-01	ci right 2.453671e-01	k: 48696	n:200000
HEATR6   200000 perm   58 sec   (3464 perm/sec)   p_kst 2.434800e-01   p_cons 5.135000e-03   p_joint 1.145000e-03

Joint ci ratio: 2.528897e-01	ci left: 9.984373e-04	ci right 1.291803e-03	k: 239	n:210000
Cons ci ratio: 1.188086e-01	ci left: 4.850636e-03	ci right 5.467906e-03	k: 1082	n:210000
KS ci ratio: 1.508965e-02	ci left: 2.413663e-01	ci right 2.450408e-01	k: 51072	n:210000
HEATR6   210000 perm   61 sec   (3423 perm/sec)   p_kst 2.432000e-01   p_cons 5.152381e-03   p_joint 1.138095e-03

Joint ci ratio: 2.458201e-01	ci left: 1.012715e-03	ci right 1.300687e-03	k: 253	n:220000
Cons ci ratio: 1.162095e-01	ci left: 4.846332e-03	ci right 5.448637e-03	k: 1131	n:220000
KS ci ratio: 1.472182e-02	ci left: 2.419298e-01	ci right 2.455224e-01	k: 53619	n:220000
HEATR6   220000 perm   65 sec   (3384 perm/sec)   p_kst 2.437227e-01   p_cons 5.140909e-03   p_joint 1.150000e-03

Joint ci ratio: 2.411203e-01	ci left: 1.009510e-03	ci right 1.290262e-03	k: 263	n:230000
Cons ci ratio: 1.140167e-01	ci left: 4.821415e-03	ci right 5.408555e-03	k: 1175	n:230000
KS ci ratio: 1.439793e-02	ci left: 2.419769e-01	ci right 2.454904e-01	k: 56058	n:230000
HEATR6   230000 perm   69 sec   (3337 perm/sec)   p_kst 2.437304e-01   p_cons 5.108696e-03   p_joint 1.143478e-03

Joint ci ratio: 2.337102e-01	ci left: 1.034069e-03	ci right 1.311537e-03	k: 280	n:240000
Cons ci ratio: 1.115763e-01	ci left: 4.831078e-03	ci right 5.405974e-03	k: 1227	n:240000
KS ci ratio: 1.408258e-02	ci left: 2.423326e-01	ci right 2.457736e-01	k: 58572	n:240000
HEATR6   240000 perm   73 sec   (3290 perm/sec)   p_kst 2.440500e-01   p_cons 5.112500e-03   p_joint 1.166667e-03

Joint ci ratio: 2.280961e-01	ci left: 1.045468e-03	ci right 1.318308e-03	k: 294	n:250000
Cons ci ratio: 1.096745e-01	ci left: 4.805072e-03	ci right 5.366497e-03	k: 1270	n:250000
KS ci ratio: 1.379605e-02	ci left: 2.424212e-01	ci right 2.457928e-01	k: 61026	n:250000
HEATR6   250000 perm   77 sec   (3253 perm/sec)   p_kst 2.441040e-01   p_cons 5.080000e-03   p_joint 1.176000e-03

Joint ci ratio: 2.258138e-01	ci left: 1.027022e-03	ci right 1.291992e-03	k: 300	n:260000
Cons ci ratio: 1.080321e-01	ci left: 4.766172e-03	ci right 5.314182e-03	k: 1309	n:260000
KS ci ratio: 1.351829e-02	ci left: 2.427223e-01	ci right 2.460296e-01	k: 63537	n:260000
HEATR6   260000 perm   81 sec   (3216 perm/sec)   p_kst 2.443731e-01   p_cons 5.034615e-03   p_joint 1.153846e-03

Joint ci ratio: 2.203877e-01	ci left: 1.041436e-03	ci right 1.302794e-03	k: 315	n:270000
Cons ci ratio: 1.059885e-01	ci left: 4.773481e-03	ci right 5.311302e-03	k: 1360	n:270000
KS ci ratio: 1.327394e-02	ci left: 2.425213e-01	ci right 2.457657e-01	k: 65918	n:270000
HEATR6   270000 perm   85 sec   (3166 perm/sec)   p_kst 2.441407e-01   p_cons 5.037037e-03   p_joint 1.166667e-03

Joint ci ratio: 2.166495e-01	ci left: 1.041378e-03	ci right 1.297698e-03	k: 326	n:280000
Cons ci ratio: 1.038352e-01	ci left: 4.801233e-03	ci right 5.330520e-03	k: 1417	n:280000
KS ci ratio: 1.302687e-02	ci left: 2.427735e-01	ci right 2.459603e-01	k: 68422	n:280000
HEATR6   280000 perm   89 sec   (3133 perm/sec)   p_kst 2.443643e-01   p_cons 5.060714e-03   p_joint 1.164286e-03

Joint ci ratio: 2.112265e-01	ci left: 1.060950e-03	ci right 1.314705e-03	k: 343	n:290000
Cons ci ratio: 1.019819e-01	ci left: 4.810370e-03	ci right 5.330631e-03	k: 1469	n:290000
KS ci ratio: 1.279560e-02	ci left: 2.429366e-01	ci right 2.460685e-01	k: 70905	n:290000
HEATR6   290000 perm   94 sec   (3101 perm/sec)   p_kst 2.445000e-01   p_cons 5.065517e-03   p_joint 1.182759e-03

Joint ci ratio: 2.082223e-01	ci left: 1.057167e-03	ci right 1.305963e-03	k: 353	n:300000
Cons ci ratio: 1.004902e-01	ci left: 4.792975e-03	ci right 5.303325e-03	k: 1513	n:300000
KS ci ratio: 1.258758e-02	ci left: 2.427566e-01	ci right 2.458350e-01	k: 73288	n:300000
HEATR6   300000 perm   98 sec   (3061 perm/sec)   p_kst 2.442933e-01   p_cons 5.043333e-03   p_joint 1.176667e-03

Joint ci ratio: 2.050610e-01	ci left: 1.056713e-03	ci right 1.301153e-03	k: 364	n:310000
Cons ci ratio: 9.903017e-02	ci left: 4.779901e-03	ci right 5.281034e-03	k: 1558	n:310000
KS ci ratio: 1.237877e-02	ci left: 2.429041e-01	ci right 2.459329e-01	k: 75769	n:310000
HEATR6   310000 perm   103 sec   (3024 perm/sec)   p_kst 2.444161e-01   p_cons 5.025806e-03   p_joint 1.174194e-03

Joint ci ratio: 2.015036e-01	ci left: 1.062248e-03	ci right 1.303182e-03	k: 377	n:320000
Cons ci ratio: 9.754033e-02	ci left: 4.776841e-03	ci right 5.269688e-03	k: 1606	n:320000
KS ci ratio: 1.218394e-02	ci left: 2.429243e-01	ci right 2.459053e-01	k: 78212	n:320000
HEATR6   320000 perm   107 sec   (2993 perm/sec)   p_kst 2.444125e-01   p_cons 5.018750e-03   p_joint 1.178125e-03

Joint ci ratio: 1.988905e-01	ci left: 1.058843e-03	ci right 1.295511e-03	k: 387	n:330000
Cons ci ratio: 9.608660e-02	ci left: 4.776978e-03	ci right 5.262080e-03	k: 1655	n:330000
KS ci ratio: 1.200345e-02	ci left: 2.427773e-01	ci right 2.457120e-01	k: 80600	n:330000
HEATR6   330000 perm   111 sec   (2963 perm/sec)   p_kst 2.442424e-01   p_cons 5.015152e-03   p_joint 1.172727e-03

Joint ci ratio: 1.956397e-01	ci left: 1.064047e-03	ci right 1.297529e-03	k: 400	n:340000
Cons ci ratio: 9.439045e-02	ci left: 4.808750e-03	ci right 5.287981e-03	k: 1715	n:340000
KS ci ratio: 1.182424e-02	ci left: 2.428418e-01	ci right 2.457332e-01	k: 83057	n:340000
HEATR6   340000 perm   116 sec   (2933 perm/sec)   p_kst 2.442853e-01   p_cons 5.044118e-03   p_joint 1.176471e-03

Joint ci ratio: 1.927765e-01	ci left: 1.066265e-03	ci right 1.296407e-03	k: 412	n:350000
Cons ci ratio: 9.296538e-02	ci left: 4.819239e-03	ci right 5.291870e-03	k: 1768	n:350000
KS ci ratio: 1.165851e-02	ci left: 2.427232e-01	ci right 2.455724e-01	k: 85451	n:350000
HEATR6   350000 perm   121 sec   (2900 perm/sec)   p_kst 2.441457e-01   p_cons 5.051429e-03   p_joint 1.177143e-03

Joint ci ratio: 1.902596e-01	ci left: 1.065737e-03	ci right 1.292415e-03	k: 423	n:360000
Cons ci ratio: 9.175493e-02	ci left: 4.812910e-03	ci right 5.278445e-03	k: 1815	n:360000
KS ci ratio: 1.149938e-02	ci left: 2.426171e-01	ci right 2.454259e-01	k: 87847	n:360000
HEATR6   360000 perm   126 sec   (2859 perm/sec)   p_kst 2.440194e-01   p_cons 5.041667e-03   p_joint 1.175000e-03

Joint ci ratio: 1.882727e-01	ci left: 1.060105e-03	ci right 1.282961e-03	k: 432	n:370000
Cons ci ratio: 9.051734e-02	ci left: 4.814887e-03	ci right 5.273999e-03	k: 1865	n:370000
KS ci ratio: 1.134593e-02	ci left: 2.425385e-01	ci right 2.453087e-01	k: 90251	n:370000
HEATR6   370000 perm   131 sec   (2827 perm/sec)   p_kst 2.439216e-01   p_cons 5.040541e-03   p_joint 1.167568e-03

Joint ci ratio: 1.842714e-01	ci left: 1.079877e-03	ci right 1.301526e-03	k: 451	n:380000
Cons ci ratio: 8.932851e-02	ci left: 4.816799e-03	ci right 5.269746e-03	k: 1915	n:380000
KS ci ratio: 1.119886e-02	ci left: 2.424512e-01	ci right 2.451843e-01	k: 92650	n:380000
HEATR6   380000 perm   136 sec   (2800 perm/sec)   p_kst 2.438158e-01   p_cons 5.039474e-03   p_joint 1.186842e-03

Joint ci ratio: 1.812871e-01	ci left: 1.088890e-03	ci right 1.308372e-03	k: 466	n:390000
Cons ci ratio: 8.811778e-02	ci left: 4.826175e-03	ci right 5.273535e-03	k: 1968	n:390000
KS ci ratio: 1.105652e-02	ci left: 2.423968e-01	ci right 2.450942e-01	k: 95060	n:390000
HEATR6   390000 perm   141 sec   (2773 perm/sec)   p_kst 2.437436e-01   p_cons 5.046154e-03   p_joint 1.194872e-03

Joint ci ratio: 1.797549e-01	ci left: 1.080764e-03	ci right 1.296566e-03	k: 474	n:400000
Cons ci ratio: 8.695499e-02	ci left: 4.835121e-03	ci right 5.277096e-03	k: 2021	n:400000
KS ci ratio: 1.091459e-02	ci left: 2.425099e-01	ci right 2.451738e-01	k: 97536	n:400000
HEATR6   400000 perm   146 sec   (2746 perm/sec)   p_kst 2.438400e-01   p_cons 5.052500e-03   p_joint 1.185000e-03

Joint ci ratio: 1.768009e-01	ci left: 1.091687e-03	ci right 1.305706e-03	k: 490	n:410000
Cons ci ratio: 8.585783e-02	ci left: 4.841280e-03	ci right 5.277955e-03	k: 2073	n:410000
KS ci ratio: 1.078283e-02	ci left: 2.424522e-01	ci right 2.450831e-01	k: 99944	n:410000
HEATR6   410000 perm   151 sec   (2718 perm/sec)   p_kst 2.437659e-01   p_cons 5.056098e-03   p_joint 1.195122e-03

Joint ci ratio: 1.736454e-01	ci left: 1.106673e-03	ci right 1.319352e-03	k: 508	n:420000
Cons ci ratio: 8.462135e-02	ci left: 4.868157e-03	ci right 5.300619e-03	k: 2134	n:420000
KS ci ratio: 1.065202e-02	ci left: 2.425258e-01	ci right 2.451254e-01	k: 102406	n:420000
HEATR6   420000 perm   156 sec   (2692 perm/sec)   p_kst 2.438238e-01   p_cons 5.080952e-03   p_joint 1.209524e-03

Joint ci ratio: 1.704911e-01	ci left: 1.123220e-03	ci right 1.334755e-03	k: 527	n:430000
Cons ci ratio: 8.355160e-02	ci left: 4.880162e-03	ci right 5.307944e-03	k: 2189	n:430000
KS ci ratio: 1.052897e-02	ci left: 2.424870e-01	ci right 2.450560e-01	k: 104821	n:430000
HEATR6   430000 perm   161 sec   (2667 perm/sec)   p_kst 2.437698e-01   p_cons 5.090698e-03   p_joint 1.225581e-03

Joint ci ratio: 1.687427e-01	ci left: 1.121631e-03	ci right 1.330480e-03	k: 538	n:440000
Cons ci ratio: 8.255838e-02	ci left: 4.887203e-03	ci right 5.310264e-03	k: 2242	n:440000
KS ci ratio: 1.040868e-02	ci left: 2.425001e-01	ci right 2.450396e-01	k: 107258	n:440000
HEATR6   440000 perm   168 sec   (2624 perm/sec)   p_kst 2.437682e-01   p_cons 5.095455e-03   p_joint 1.222727e-03

Joint ci ratio: 1.664421e-01	ci left: 1.128642e-03	ci right 1.335644e-03	k: 553	n:450000
Cons ci ratio: 8.154623e-02	ci left: 4.900491e-03	ci right 5.319254e-03	k: 2298	n:450000
KS ci ratio: 1.029565e-02	ci left: 2.423974e-01	ci right 2.449081e-01	k: 109643	n:450000
HEATR6   450000 perm   173 sec   (2600 perm/sec)   p_kst 2.436511e-01   p_cons 5.106667e-03   p_joint 1.228889e-03

Joint ci ratio: 1.633729e-01	ci left: 1.147875e-03	ci right 1.354141e-03	k: 574	n:460000
Cons ci ratio: 8.067378e-02	ci left: 4.900449e-03	ci right 5.314518e-03	k: 2348	n:460000
KS ci ratio: 1.018016e-02	ci left: 2.425185e-01	ci right 2.450021e-01	k: 112129	n:460000
HEATR6   460000 perm   179 sec   (2574 perm/sec)   p_kst 2.437587e-01   p_cons 5.104348e-03   p_joint 1.247826e-03

Joint ci ratio: 1.614194e-01	ci left: 1.152029e-03	ci right 1.356326e-03	k: 588	n:470000
Cons ci ratio: 7.979531e-02	ci left: 4.904603e-03	ci right 5.314300e-03	k: 2400	n:470000
KS ci ratio: 1.007311e-02	ci left: 2.424647e-01	ci right 2.449215e-01	k: 114535	n:470000
HEATR6   470000 perm   184 sec   (2551 perm/sec)   p_kst 2.436915e-01   p_cons 5.106383e-03   p_joint 1.251064e-03

Joint ci ratio: 1.600667e-01	ci left: 1.148024e-03	ci right 1.349740e-03	k: 598	n:480000
Cons ci ratio: 7.892877e-02	ci left: 4.910650e-03	ci right 5.316193e-03	k: 2453	n:480000
KS ci ratio: 9.970843e-03	ci left: 2.423591e-01	ci right 2.447898e-01	k: 116915	n:480000
HEATR6   480000 perm   190 sec   (2528 perm/sec)   p_kst 2.435729e-01   p_cons 5.110417e-03   p_joint 1.245833e-03

Joint ci ratio: 1.587475e-01	ci left: 1.144189e-03	ci right 1.343417e-03	k: 608	n:490000
Cons ci ratio: 7.816824e-02	ci left: 4.906467e-03	ci right 5.307582e-03	k: 2501	n:490000
KS ci ratio: 9.868288e-03	ci left: 2.423823e-01	ci right 2.447881e-01	k: 119356	n:490000
HEATR6   490000 perm   196 sec   (2506 perm/sec)   p_kst 2.435837e-01   p_cons 5.104082e-03   p_joint 1.240816e-03

Joint ci ratio: 1.572063e-01	ci left: 1.144356e-03	ci right 1.341496e-03	k: 620	n:500000
Cons ci ratio: 7.744455e-02	ci left: 4.900508e-03	ci right 5.297260e-03	k: 2548	n:500000
KS ci ratio: 9.767138e-03	ci left: 2.424686e-01	ci right 2.448504e-01	k: 121829	n:500000
HEATR6   500000 perm   202 sec   (2475 perm/sec)   p_kst 2.436580e-01   p_cons 5.096000e-03   p_joint 1.240000e-03

Joint ci ratio: 1.558324e-01	ci left: 1.142642e-03	ci right 1.337605e-03	k: 631	n:510000
Cons ci ratio: 7.666642e-02	ci left: 4.904416e-03	ci right 5.297317e-03	k: 2600	n:510000
KS ci ratio: 9.669550e-03	ci left: 2.425320e-01	ci right 2.448905e-01	k: 124292	n:510000
HEATR6   510000 perm   208 sec   (2449 perm/sec)   p_kst 2.437098e-01   p_cons 5.098039e-03   p_joint 1.237255e-03

Joint ci ratio: 1.541344e-01	ci left: 1.146547e-03	ci right 1.339848e-03	k: 645	n:520000
Cons ci ratio: 7.614241e-02	ci left: 4.878006e-03	ci right 5.266002e-03	k: 2636	n:520000
KS ci ratio: 9.573980e-03	ci left: 2.426258e-01	ci right 2.449617e-01	k: 126772	n:520000
HEATR6   520000 perm   214 sec   (2427 perm/sec)   p_kst 2.437923e-01   p_cons 5.069231e-03   p_joint 1.240385e-03

Joint ci ratio: 1.528388e-01	ci left: 1.144871e-03	ci right 1.336119e-03	k: 656	n:530000
Cons ci ratio: 7.537433e-02	ci left: 4.885925e-03	ci right 5.270459e-03	k: 2690	n:530000
KS ci ratio: 9.484634e-03	ci left: 2.425823e-01	ci right 2.448959e-01	k: 129181	n:530000
HEATR6   530000 perm   220 sec   (2405 perm/sec)   p_kst 2.437377e-01   p_cons 5.075472e-03   p_joint 1.237736e-03

Joint ci ratio: 1.507864e-01	ci left: 1.155738e-03	ci right 1.345974e-03	k: 674	n:540000
Cons ci ratio: 7.458808e-02	ci left: 4.899023e-03	ci right 5.280391e-03	k: 2747	n:540000
KS ci ratio: 9.396280e-03	ci left: 2.425979e-01	ci right 2.448900e-01	k: 131621	n:540000
HEATR6   540000 perm   226 sec   (2386 perm/sec)   p_kst 2.437426e-01   p_cons 5.087037e-03   p_joint 1.248148e-03

Joint ci ratio: 1.489221e-01	ci left: 1.164475e-03	ci right 1.353569e-03	k: 691	n:550000
Cons ci ratio: 7.386565e-02	ci left: 4.906310e-03	ci right 5.284387e-03	k: 2801	n:550000
KS ci ratio: 9.313244e-03	ci left: 2.424987e-01	ci right 2.447695e-01	k: 133998	n:550000
HEATR6   550000 perm   232 sec   (2367 perm/sec)   p_kst 2.436327e-01   p_cons 5.092727e-03   p_joint 1.256364e-03

Joint ci ratio: 6.597681e-02	ci left: 6.057549e-03	ci right 6.472584e-03	k: 3507	n:560000
Cons ci ratio: 7.320246e-02	ci left: 4.908094e-03	ci right 5.282769e-03	k: 2852	n:560000
KS ci ratio: 9.229910e-03	ci left: 2.425011e-01	ci right 2.447515e-01	k: 136430	n:560000
HEATR6   560000 perm   239 sec   (2345 perm/sec)   p_kst 2.436250e-01   p_cons 5.092857e-03   p_joint 6.262500e-03

Outputting figure to mutsig2_images.part000000000077/HEATR6.2_3626_560000_0.24363_0.0050929_0.0062625.png
                gene_name: HEATR6
               theta_stop: 0.073 
                    nperm: 560000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.0051 
      ci_cons_bounds_left: 0.0049 
     ci_cons_bounds_right: 0.0053 
                  p_joint: 0.0063 
     ci_joint_bounds_left: 0.0061 
    ci_joint_bounds_right: 0.0065 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000077
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 77 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1431>
Subject: Job 9893964: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1431>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000078> was used as the working directory.
Started at Sat Oct  6 00:11:03 2012
Results reported at Sat Oct  6 00:42:13 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000078.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000078.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 78  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000078.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2060.95 sec.
    Max Memory :      3613 MB
    Max Swap   :      6010 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
78
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 78
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 78: processing genes 6943 - 7032
Calculating significance of each gene.
Using projection method.
6943	HEG1	6.878213e-01
6944	HELB	1.707754e-01
6945	HELLS	4.547132e-01
6946	HELQ	6.298195e-01
6947	HELT	5.659032e-01
In gene HELZ the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 5949    n = 1	mu =   2.96e-07
6948	HELZ	8.483436e-01
6949	HEMGN	1.934416e-01
6950	HEMK1	1
6951	HEPACAM	4.203345e-01
6952	HEPACAM2	4.177478e-01
6953	HEPH	9.381944e-01
6954	HEPHL1	7.165671e-01
6955	HEPN1	7.815521e-02
6956	HERC1	9.845308e-01
6957	HERC2	9.498704e-01
6958	HERC3	1.004853e-01
6959	HERC4	2.239329e-01
6960	HERC5	1.658514e-01
6961	HERC6	2.254422e-01
6962	HERPUD1	7.893516e-01
6963	HERPUD2	4.105973e-01
6964	HES1	6.954766e-01
6965	HES3	1
6966	HES4	1
6967	HES6	1
6968	HES7	1
6969	HESX1	5.586851e-01
6970	HEXA	1
6971	HEXB	3.477501e-01
6972	HEXDC	1
6973	HEXIM1	1
6974	HEXIM2	3.692409e-01
6975	HEY1	9.884982e-02
6976	HEY2	1.030442e-01
6977	HEYL	5.308101e-01
6978	HFE	1.545505e-01
6979	HFE2	3.989763e-01
6980	HFM1	1.372226e-01
6981	HGD	1.774608e-02
6982	HGF	7.218694e-01
6983	HGFAC	5.491837e-01
6984	HGS	1
6985	HGSNAT	5.001704e-01
6986	HHAT	1.294489e-01
6987	HHATL	7.845734e-01
6988	HHEX	2.331175e-01
6989	HHIP	5.546259e-01
6990	HHIPL1	9.090802e-01
6991	HHIPL2	2.928527e-01
6992	HHLA2	6.320148e-01
6993	HHLA3	1.412051e-02
6994	HIAT1	6.142616e-01
6995	HIATL1	4.416971e-01
6996	HIBADH	1
6997	HIBCH	4.866670e-01
6998	HIC1	1
6999	HIC2	9.498025e-01
7000/18030 7000	HIF1A	8.524651e-01
7001	HIF1AN	4.663344e-01
7002	HIF3A	2.296240e-01
7003	HIGD1A	1
7004	HIGD1B	8.686175e-02
7005	HIGD1C	1
7006	HIGD2A	4.026671e-01
7007	HINFP	1.789277e-01
7008	HINT1	2.168703e-01
7009	HINT2	4.877516e-01
7010	HINT3	1
7011	HIP1	5.847133e-01
7012	HIP1R	9.224585e-01
7013	HIPK1	5.550414e-01
7014	HIPK2	8.329635e-01
7015	HIPK3	9.302296e-01
7016	HIPK4	5.961837e-01
7017	HIRA	9.527681e-01
7018	HIRIP3	6.434644e-01
7019	HIST1H1A	6.028027e-03
7020	HIST1H1B	5.767844e-01
7021	HIST1H1C	4.942554e-01
7022	HIST1H1D	2.017284e-01
7023	HIST1H1E	1
7024	HIST1H1T	1
7025	HIST1H2AA	3.845410e-01
7026	HIST1H2AB	3.366654e-01
7027	HIST1H2AC	1
7028	HIST1H2AD	2.902404e-01
7029	HIST1H2AE	4.951936e-01
7030	HIST1H2AG	1
7031	HIST1H2AH	1
7032	HIST1H2AI	1
Done

Running MutSig 2:
Scatter job 78: processing genes 6943 - 7032
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HERC2
Processing conservation and coverage...
67% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.844721e-02	ci left: 6.455889e-01	ci right 6.643208e-01	k: 6550	n:10000
Cons ci ratio: 3.040660e-02	ci left: 6.147227e-01	ci right 6.338048e-01	k: 6243	n:10000
KS ci ratio: 4.244799e-02	ci left: 4.503941e-01	ci right 4.700291e-01	k: 4602	n:10000
HERC2   10000 perm   6 sec   (1686 perm/sec)   p_kst 4.602000e-01   p_cons 6.243000e-01   p_joint 6.550000e-01

Outputting figure to mutsig2_images.part000000000078/HERC2.20_14873_10000_0.4602_0.6243_0.655.png
                gene_name: HERC2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 2 percent done.
HERC1
Processing conservation and coverage...
67% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.939426e-02	ci left: 2.334341e-01	ci right 2.503165e-01	k: 2418	n:10000
Cons ci ratio: 2.237232e-02	ci left: 7.457390e-01	ci right 7.627127e-01	k: 7543	n:10000
KS ci ratio: 1.161173e-01	ci left: 9.632952e-02	ci right 1.083033e-01	k: 1022	n:10000
HERC1   10000 perm   5 sec   (1890 perm/sec)   p_kst 1.022000e-01   p_cons 7.543000e-01   p_joint 2.418000e-01

Joint ci ratio: 5.993394e-02	ci left: 1.708928e-01	ci right 1.815015e-01	k: 3523	n:20000
Cons ci ratio: 1.647692e-02	ci left: 7.327532e-01	ci right 7.449773e-01	k: 14778	n:20000
KS ci ratio: 8.188621e-02	ci left: 9.857491e-02	ci right 1.070410e-01	k: 2055	n:20000
HERC1   20000 perm   11 sec   (1830 perm/sec)   p_kst 1.027500e-01   p_cons 7.389000e-01   p_joint 1.761500e-01

Outputting figure to mutsig2_images.part000000000078/HERC1.16_14894_20000_0.10275_0.7389_0.17615.png
                gene_name: HERC1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 4 percent done.
HFM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.277544e-02	ci left: 5.787803e-01	ci right 5.981681e-01	k: 5885	n:10000
Cons ci ratio: 3.798239e-02	ci left: 5.058516e-01	ci right 5.255392e-01	k: 5157	n:10000
KS ci ratio: 4.050932e-02	ci left: 4.736615e-01	ci right 4.933481e-01	k: 4835	n:10000
HFM1   10000 perm   3 sec   (3490 perm/sec)   p_kst 4.835000e-01   p_cons 5.157000e-01   p_joint 5.885000e-01

Outputting figure to mutsig2_images.part000000000078/HFM1.13_4460_10000_0.4835_0.5157_0.5885.png
                gene_name: HFM1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 5 percent done.
HELZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.369981e-01	ci left: 3.885975e-03	ci right 6.813584e-03	k: 52	n:10000
Cons ci ratio: 1.257205e-01	ci left: 8.300372e-02	ci right 9.423727e-02	k: 885	n:10000
KS ci ratio: 5.896315e-01	ci left: 3.113627e-03	ci right 5.787748e-03	k: 43	n:10000
HELZ   10000 perm   3 sec   (3439 perm/sec)   p_kst 4.300000e-03   p_cons 8.850000e-02   p_joint 5.200000e-03

Joint ci ratio: 2.541997e-01	ci left: 1.025603e-02	ci right 1.328841e-02	k: 234	n:20000
Cons ci ratio: 8.763043e-02	ci left: 8.695066e-02	ci right 9.496872e-02	k: 1818	n:20000
KS ci ratio: 4.346619e-01	ci left: 3.172987e-03	ci right 4.975909e-03	k: 80	n:20000
HELZ   20000 perm   6 sec   (3148 perm/sec)   p_kst 4.000000e-03   p_cons 9.090000e-02   p_joint 1.170000e-02

Joint ci ratio: 3.061978e-01	ci left: 4.602231e-03	ci right 6.295715e-03	k: 162	n:30000
Cons ci ratio: 7.224430e-02	ci left: 8.612899e-02	ci right 9.261746e-02	k: 2680	n:30000
KS ci ratio: 3.632525e-01	ci left: 3.165816e-03	ci right 4.599568e-03	k: 115	n:30000
HELZ   30000 perm   10 sec   (3054 perm/sec)   p_kst 3.833333e-03   p_cons 8.933333e-02   p_joint 5.400000e-03

Joint ci ratio: 2.678746e-01	ci left: 4.612062e-03	ci right 6.061178e-03	k: 212	n:40000
Cons ci ratio: 6.249524e-02	ci left: 8.674452e-02	ci right 9.236523e-02	k: 3581	n:40000
KS ci ratio: 3.205363e-01	ci left: 3.128777e-03	ci right 4.345020e-03	k: 148	n:40000
HELZ   40000 perm   13 sec   (2979 perm/sec)   p_kst 3.700000e-03   p_cons 8.952500e-02   p_joint 5.300000e-03

Joint ci ratio: 2.900375e-01	ci left: 3.112579e-03	ci right 4.186319e-03	k: 181	n:50000
Cons ci ratio: 5.590099e-02	ci left: 8.703147e-02	ci right 9.205630e-02	k: 4476	n:50000
KS ci ratio: 2.900375e-01	ci left: 3.112579e-03	ci right 4.186319e-03	k: 181	n:50000
HELZ   50000 perm   17 sec   (2900 perm/sec)   p_kst 3.620000e-03   p_cons 8.952000e-02   p_joint 3.620000e-03

Joint ci ratio: 2.746620e-01	ci left: 2.919007e-03	ci right 3.863370e-03	k: 202	n:60000
Cons ci ratio: 5.098564e-02	ci left: 8.739215e-02	ci right 9.198096e-02	k: 5380	n:60000
KS ci ratio: 2.637992e-01	ci left: 3.183279e-03	ci right 4.165693e-03	k: 219	n:60000
HELZ   60000 perm   21 sec   (2852 perm/sec)   p_kst 3.650000e-03   p_cons 8.966667e-02   p_joint 3.366667e-03

Joint ci ratio: 2.597555e-01	ci left: 2.821891e-03	ci right 3.677248e-03	k: 226	n:70000
Cons ci ratio: 4.738136e-02	ci left: 8.695708e-02	ci right 9.119134e-02	k: 6234	n:70000
KS ci ratio: 2.474777e-01	ci left: 3.129649e-03	ci right 4.026563e-03	k: 249	n:70000
HELZ   70000 perm   25 sec   (2816 perm/sec)   p_kst 3.557143e-03   p_cons 8.905714e-02   p_joint 3.228571e-03

Joint ci ratio: 2.180116e-01	ci left: 3.586255e-03	ci right 4.475307e-03	k: 321	n:80000
Cons ci ratio: 4.418087e-02	ci left: 8.760478e-02	ci right 9.157504e-02	k: 7166	n:80000
KS ci ratio: 2.330194e-01	ci left: 3.114379e-03	ci right 3.947265e-03	k: 281	n:80000
HELZ   80000 perm   29 sec   (2788 perm/sec)   p_kst 3.512500e-03   p_cons 8.957500e-02   p_joint 4.012500e-03

Joint ci ratio: 2.559236e-01	ci left: 2.267470e-03	ci right 2.943003e-03	k: 233	n:90000
Cons ci ratio: 4.307752e-02	ci left: 8.243768e-02	ci right 8.607806e-02	k: 7582	n:90000
KS ci ratio: 2.184013e-01	ci left: 3.177203e-03	ci right 3.966438e-03	k: 320	n:90000
HELZ   90000 perm   33 sec   (2754 perm/sec)   p_kst 3.555556e-03   p_cons 8.424444e-02   p_joint 2.588889e-03

Joint ci ratio: 1.976005e-01	ci left: 3.532650e-03	ci right 4.316556e-03	k: 391	n:100000
Cons ci ratio: 4.077863e-02	ci left: 8.286245e-02	ci right 8.632169e-02	k: 8458	n:100000
KS ci ratio: 2.053719e-01	ci left: 3.257227e-03	ci right 4.012014e-03	k: 362	n:100000
HELZ   100000 perm   37 sec   (2682 perm/sec)   p_kst 3.620000e-03   p_cons 8.458000e-02   p_joint 3.910000e-03

Joint ci ratio: 1.886685e-01	ci left: 3.540258e-03	ci right 4.286273e-03	k: 429	n:110000
Cons ci ratio: 3.887840e-02	ci left: 8.295288e-02	ci right 8.625088e-02	k: 9305	n:110000
KS ci ratio: 1.968813e-01	ci left: 3.237376e-03	ci right 3.952827e-03	k: 394	n:110000
HELZ   110000 perm   41 sec   (2656 perm/sec)   p_kst 3.581818e-03   p_cons 8.459091e-02   p_joint 3.900000e-03

Joint ci ratio: 1.840330e-01	ci left: 3.419998e-03	ci right 4.120986e-03	k: 451	n:120000
Cons ci ratio: 3.720723e-02	ci left: 8.308920e-02	ci right 8.624757e-02	k: 10159	n:120000
KS ci ratio: 1.893635e-01	ci left: 3.221368e-03	ci right 3.902970e-03	k: 426	n:120000
HELZ   120000 perm   46 sec   (2624 perm/sec)   p_kst 3.550000e-03   p_cons 8.465833e-02   p_joint 3.758333e-03

Joint ci ratio: 1.814595e-01	ci left: 3.252320e-03	ci right 3.908592e-03	k: 464	n:130000
Cons ci ratio: 3.570977e-02	ci left: 8.331394e-02	ci right 8.635076e-02	k: 11027	n:130000
KS ci ratio: 1.828459e-01	ci left: 3.200921e-03	ci right 3.852303e-03	k: 457	n:130000
HELZ   130000 perm   50 sec   (2601 perm/sec)   p_kst 3.515385e-03   p_cons 8.482308e-02   p_joint 3.569231e-03

Joint ci ratio: 1.381959e-01	ci left: 5.319243e-03	ci right 6.115725e-03	k: 799	n:140000
Cons ci ratio: 3.430409e-02	ci left: 8.384893e-02	ci right 8.678255e-02	k: 11943	n:140000
KS ci ratio: 1.775053e-01	ci left: 3.163259e-03	ci right 3.786156e-03	k: 485	n:140000
HELZ   140000 perm   54 sec   (2571 perm/sec)   p_kst 3.464286e-03   p_cons 8.530714e-02   p_joint 5.707143e-03

Joint ci ratio: 1.343913e-01	ci left: 5.260826e-03	ci right 6.025140e-03	k: 845	n:150000
Cons ci ratio: 3.316945e-02	ci left: 8.376541e-02	ci right 8.659731e-02	k: 12776	n:150000
KS ci ratio: 1.726067e-01	ci left: 3.130859e-03	ci right 3.728589e-03	k: 513	n:150000
HELZ   150000 perm   59 sec   (2536 perm/sec)   p_kst 3.420000e-03   p_cons 8.517333e-02   p_joint 5.633333e-03

Joint ci ratio: 1.533236e-01	ci left: 3.756716e-03	ci right 4.386463e-03	k: 650	n:160000
Cons ci ratio: 3.208634e-02	ci left: 8.395433e-02	ci right 8.669822e-02	k: 13651	n:160000
KS ci ratio: 1.664065e-01	ci left: 3.168597e-03	ci right 3.749625e-03	k: 552	n:160000
HELZ   160000 perm   64 sec   (2506 perm/sec)   p_kst 3.450000e-03   p_cons 8.531875e-02   p_joint 4.062500e-03

Joint ci ratio: 1.476446e-01	ci left: 3.824449e-03	ci right 4.439710e-03	k: 701	n:170000
Cons ci ratio: 3.118861e-02	ci left: 8.369597e-02	ci right 8.635350e-02	k: 14453	n:170000
KS ci ratio: 1.612403e-01	ci left: 3.185295e-03	ci right 3.749494e-03	k: 588	n:170000
HELZ   170000 perm   69 sec   (2482 perm/sec)   p_kst 3.458824e-03   p_cons 8.501765e-02   p_joint 4.123529e-03

Joint ci ratio: 1.440007e-01	ci left: 3.804680e-03	ci right 4.400355e-03	k: 737	n:180000
Cons ci ratio: 3.027556e-02	ci left: 8.390867e-02	ci right 8.649359e-02	k: 15335	n:180000
KS ci ratio: 1.571592e-01	ci left: 3.173694e-03	ci right 3.720269e-03	k: 619	n:180000
HELZ   180000 perm   73 sec   (2457 perm/sec)   p_kst 3.438889e-03   p_cons 8.519444e-02   p_joint 4.094444e-03

Joint ci ratio: 1.501664e-01	ci left: 3.305266e-03	ci right 3.846897e-03	k: 678	n:190000
Cons ci ratio: 2.948200e-02	ci left: 8.386997e-02	ci right 8.638481e-02	k: 16173	n:190000
KS ci ratio: 1.536100e-01	ci left: 3.153352e-03	ci right 3.683030e-03	k: 648	n:190000
HELZ   190000 perm   78 sec   (2423 perm/sec)   p_kst 3.410526e-03   p_cons 8.512105e-02   p_joint 3.568421e-03

Joint ci ratio: 1.461321e-01	ci left: 3.322962e-03	ci right 3.851587e-03	k: 716	n:200000
Cons ci ratio: 2.874775e-02	ci left: 8.383593e-02	ci right 8.628611e-02	k: 17011	n:200000
KS ci ratio: 1.495184e-01	ci left: 3.168861e-03	ci right 3.685697e-03	k: 684	n:200000
HELZ   200000 perm   83 sec   (2398 perm/sec)   p_kst 3.420000e-03   p_cons 8.505500e-02   p_joint 3.580000e-03

Joint ci ratio: 1.427865e-01	ci left: 3.320778e-03	ci right 3.835931e-03	k: 750	n:210000
Cons ci ratio: 2.803058e-02	ci left: 8.399984e-02	ci right 8.639258e-02	k: 17890	n:210000
KS ci ratio: 1.460424e-01	ci left: 3.169295e-03	ci right 3.673137e-03	k: 717	n:210000
HELZ   210000 perm   89 sec   (2364 perm/sec)   p_kst 3.414286e-03   p_cons 8.519048e-02   p_joint 3.571429e-03

Joint ci ratio: 1.409274e-01	ci left: 3.257509e-03	ci right 3.755714e-03	k: 770	n:220000
Cons ci ratio: 2.739647e-02	ci left: 8.396885e-02	ci right 8.630573e-02	k: 18729	n:220000
KS ci ratio: 1.425128e-01	ci left: 3.182967e-03	ci right 3.675714e-03	k: 753	n:220000
HELZ   220000 perm   94 sec   (2343 perm/sec)   p_kst 3.422727e-03   p_cons 8.513182e-02   p_joint 3.500000e-03

Joint ci ratio: 1.380918e-01	ci left: 3.250151e-03	ci right 3.736407e-03	k: 802	n:230000
Cons ci ratio: 2.678408e-02	ci left: 8.405346e-02	ci right 8.633961e-02	k: 19594	n:230000
KS ci ratio: 1.392273e-01	ci left: 3.195584e-03	ci right 3.677933e-03	k: 789	n:230000
HELZ   230000 perm   99 sec   (2313 perm/sec)   p_kst 3.430435e-03   p_cons 8.519130e-02   p_joint 3.486957e-03

Joint ci ratio: 1.390608e-01	ci left: 3.070464e-03	ci right 3.533326e-03	k: 791	n:240000
Cons ci ratio: 2.622572e-02	ci left: 8.404458e-02	ci right 8.628211e-02	k: 20438	n:240000
KS ci ratio: 1.363248e-01	ci left: 3.199219e-03	ci right 3.671232e-03	k: 823	n:240000
HELZ   240000 perm   105 sec   (2292 perm/sec)   p_kst 3.429167e-03   p_cons 8.515833e-02   p_joint 3.295833e-03

Joint ci ratio: 1.251021e-01	ci left: 3.667195e-03	ci right 4.160415e-03	k: 977	n:250000
Cons ci ratio: 2.572865e-02	ci left: 8.386985e-02	ci right 8.605978e-02	k: 21240	n:250000
KS ci ratio: 1.338315e-01	ci left: 3.191059e-03	ci right 3.652572e-03	k: 854	n:250000
HELZ   250000 perm   110 sec   (2271 perm/sec)   p_kst 3.416000e-03   p_cons 8.496000e-02   p_joint 3.908000e-03

Joint ci ratio: 1.236604e-01	ci left: 3.611852e-03	ci right 4.091620e-03	k: 1000	n:260000
Cons ci ratio: 2.523816e-02	ci left: 8.383514e-02	ci right 8.598182e-02	k: 22075	n:260000
KS ci ratio: 1.308786e-01	ci left: 3.213362e-03	ci right 3.667049e-03	k: 893	n:260000
HELZ   260000 perm   115 sec   (2251 perm/sec)   p_kst 3.434615e-03   p_cons 8.490385e-02   p_joint 3.846154e-03

Joint ci ratio: 1.222074e-01	ci left: 3.564230e-03	ci right 4.031706e-03	k: 1024	n:270000
Cons ci ratio: 2.475344e-02	ci left: 8.393595e-02	ci right 8.604334e-02	k: 22946	n:270000
KS ci ratio: 1.290180e-01	ci left: 3.187511e-03	ci right 3.630661e-03	k: 919	n:270000
HELZ   270000 perm   121 sec   (2230 perm/sec)   p_kst 3.403704e-03   p_cons 8.498519e-02   p_joint 3.792593e-03

Joint ci ratio: 1.224557e-01	ci left: 3.423072e-03	ci right 3.873012e-03	k: 1020	n:280000
Cons ci ratio: 2.429172e-02	ci left: 8.405478e-02	ci right 8.612525e-02	k: 23824	n:280000
KS ci ratio: 1.266315e-01	ci left: 3.194675e-03	ci right 3.629989e-03	k: 954	n:280000
HELZ   280000 perm   127 sec   (2210 perm/sec)   p_kst 3.407143e-03   p_cons 8.508571e-02   p_joint 3.642857e-03

Joint ci ratio: 1.213943e-01	ci left: 3.365205e-03	ci right 3.803429e-03	k: 1038	n:290000
Cons ci ratio: 2.386811e-02	ci left: 8.408002e-02	ci right 8.611449e-02	k: 24677	n:290000
KS ci ratio: 1.248800e-01	ci left: 3.174687e-03	ci right 3.600850e-03	k: 981	n:290000
HELZ   290000 perm   133 sec   (2185 perm/sec)   p_kst 3.382759e-03   p_cons 8.509310e-02   p_joint 3.579310e-03

Joint ci ratio: 1.195118e-01	ci left: 3.359716e-03	ci right 3.789961e-03	k: 1071	n:300000
Cons ci ratio: 2.349006e-02	ci left: 8.394472e-02	ci right 8.594331e-02	k: 25482	n:300000
KS ci ratio: 1.230770e-01	ci left: 3.162531e-03	ci right 3.580487e-03	k: 1010	n:300000
HELZ   300000 perm   139 sec   (2164 perm/sec)   p_kst 3.366667e-03   p_cons 8.494000e-02   p_joint 3.570000e-03

Joint ci ratio: 1.184153e-01	ci left: 3.313930e-03	ci right 3.734145e-03	k: 1091	n:310000
Cons ci ratio: 2.310398e-02	ci left: 8.398846e-02	ci right 8.595479e-02	k: 26340	n:310000
KS ci ratio: 1.214670e-01	ci left: 3.144945e-03	ci right 3.554749e-03	k: 1037	n:310000
HELZ   310000 perm   145 sec   (2145 perm/sec)   p_kst 3.345161e-03   p_cons 8.496774e-02   p_joint 3.519355e-03

Joint ci ratio: 1.026040e-01	ci left: 4.307574e-03	ci right 4.776468e-03	k: 1452	n:320000
Cons ci ratio: 2.276928e-02	ci left: 8.380589e-02	ci right 8.573914e-02	k: 27126	n:320000
KS ci ratio: 1.196933e-01	ci left: 3.140618e-03	ci right 3.543459e-03	k: 1068	n:320000
HELZ   320000 perm   150 sec   (2128 perm/sec)   p_kst 3.337500e-03   p_cons 8.476875e-02   p_joint 4.537500e-03

Joint ci ratio: 1.080901e-01	ci left: 3.755060e-03	ci right 4.187056e-03	k: 1309	n:330000
Cons ci ratio: 2.239572e-02	ci left: 8.399937e-02	ci right 8.590489e-02	k: 28033	n:330000
KS ci ratio: 1.179951e-01	ci left: 3.136594e-03	ci right 3.532813e-03	k: 1099	n:330000
HELZ   330000 perm   156 sec   (2110 perm/sec)   p_kst 3.330303e-03   p_cons 8.494848e-02   p_joint 3.966667e-03

Joint ci ratio: 9.514571e-02	ci left: 4.731211e-03	ci right 5.206698e-03	k: 1688	n:340000
Cons ci ratio: 2.207917e-02	ci left: 8.390663e-02	ci right 8.578280e-02	k: 28846	n:340000
KS ci ratio: 1.160076e-01	ci left: 3.152837e-03	ci right 3.543939e-03	k: 1137	n:340000
HELZ   340000 perm   163 sec   (2091 perm/sec)   p_kst 3.344118e-03   p_cons 8.484118e-02   p_joint 4.964706e-03

Joint ci ratio: 9.612962e-02	ci left: 4.501189e-03	ci right 4.958499e-03	k: 1654	n:350000
Cons ci ratio: 2.176886e-02	ci left: 8.386771e-02	ci right 8.571632e-02	k: 29676	n:350000
KS ci ratio: 1.141659e-01	ci left: 3.165428e-03	ci right 3.551438e-03	k: 1174	n:350000
HELZ   350000 perm   169 sec   (2071 perm/sec)   p_kst 3.354286e-03   p_cons 8.478857e-02   p_joint 4.725714e-03

Joint ci ratio: 9.681413e-02	ci left: 4.313788e-03	ci right 4.755357e-03	k: 1631	n:360000
Cons ci ratio: 2.146473e-02	ci left: 8.387811e-02	ci right 8.570080e-02	k: 30523	n:360000
KS ci ratio: 1.126426e-01	ci left: 3.163867e-03	ci right 3.544197e-03	k: 1206	n:360000
HELZ   360000 perm   176 sec   (2047 perm/sec)   p_kst 3.350000e-03   p_cons 8.478611e-02   p_joint 4.530556e-03

Joint ci ratio: 9.544925e-02	ci left: 4.321173e-03	ci right 4.756913e-03	k: 1678	n:370000
Cons ci ratio: 2.117043e-02	ci left: 8.390695e-02	ci right 8.570496e-02	k: 31377	n:370000
KS ci ratio: 1.107757e-01	ci left: 3.186074e-03	ci right 3.562311e-03	k: 1247	n:370000
HELZ   370000 perm   184 sec   (2016 perm/sec)   p_kst 3.370270e-03   p_cons 8.480270e-02   p_joint 4.535135e-03

Joint ci ratio: 9.600211e-02	ci left: 4.158638e-03	ci right 4.580554e-03	k: 1659	n:380000
Cons ci ratio: 2.114083e-02	ci left: 8.209328e-02	ci right 8.384993e-02	k: 31528	n:380000
KS ci ratio: 1.092541e-01	ci left: 3.191801e-03	ci right 3.563204e-03	k: 1282	n:380000
HELZ   380000 perm   190 sec   (1998 perm/sec)   p_kst 3.373684e-03   p_cons 8.296842e-02   p_joint 4.365789e-03

Joint ci ratio: 9.486641e-02	ci left: 4.152122e-03	ci right 4.568116e-03	k: 1699	n:390000
Cons ci ratio: 2.087250e-02	ci left: 8.207218e-02	ci right 8.380582e-02	k: 32345	n:390000
KS ci ratio: 1.079993e-01	ci left: 3.184792e-03	ci right 3.550853e-03	k: 1312	n:390000
HELZ   390000 perm   197 sec   (1983 perm/sec)   p_kst 3.364103e-03   p_cons 8.293590e-02   p_joint 4.356410e-03

Joint ci ratio: 9.586778e-02	ci left: 3.962887e-03	ci right 4.364348e-03	k: 1664	n:400000
Cons ci ratio: 2.061516e-02	ci left: 8.204480e-02	ci right 8.375625e-02	k: 33159	n:400000
KS ci ratio: 1.063506e-01	ci left: 3.204927e-03	ci right 3.567326e-03	k: 1353	n:400000
HELZ   400000 perm   203 sec   (1967 perm/sec)   p_kst 3.382500e-03   p_cons 8.289750e-02   p_joint 4.160000e-03

Joint ci ratio: 8.927489e-02	ci left: 4.471469e-03	ci right 4.891676e-03	k: 1918	n:410000
Cons ci ratio: 2.034817e-02	ci left: 8.215970e-02	ci right 8.385108e-02	k: 34031	n:410000
KS ci ratio: 1.048506e-01	ci left: 3.219368e-03	ci right 3.577950e-03	k: 1392	n:410000
HELZ   410000 perm   210 sec   (1951 perm/sec)   p_kst 3.395122e-03   p_cons 8.300244e-02   p_joint 4.678049e-03

Joint ci ratio: 8.996535e-02	ci left: 4.297488e-03	ci right 4.704632e-03	k: 1889	n:420000
Cons ci ratio: 2.012496e-02	ci left: 8.201566e-02	ci right 8.368534e-02	k: 34796	n:420000
KS ci ratio: 1.035212e-01	ci left: 3.226198e-03	ci right 3.580707e-03	k: 1428	n:420000
HELZ   420000 perm   217 sec   (1936 perm/sec)   p_kst 3.400000e-03   p_cons 8.284762e-02   p_joint 4.497619e-03

Joint ci ratio: 8.891309e-02	ci left: 4.299857e-03	ci right 4.702214e-03	k: 1934	n:430000
Cons ci ratio: 1.989581e-02	ci left: 8.197797e-02	ci right 8.362766e-02	k: 35604	n:430000
KS ci ratio: 1.023815e-01	ci left: 3.223672e-03	ci right 3.573770e-03	k: 1460	n:430000
HELZ   430000 perm   224 sec   (1921 perm/sec)   p_kst 3.395349e-03   p_cons 8.280000e-02   p_joint 4.497674e-03

Joint ci ratio: 8.841424e-02	ci left: 4.251020e-03	ci right 4.646459e-03	k: 1956	n:440000
Cons ci ratio: 1.966490e-02	ci left: 8.201449e-02	ci right 8.364555e-02	k: 36444	n:440000
KS ci ratio: 1.011766e-01	ci left: 3.227928e-03	ci right 3.574117e-03	k: 1495	n:440000
HELZ   440000 perm   231 sec   (1905 perm/sec)   p_kst 3.397727e-03   p_cons 8.282727e-02   p_joint 4.445455e-03

Joint ci ratio: 8.329399e-02	ci left: 4.693709e-03	ci right 5.103816e-03	k: 2203	n:450000
Cons ci ratio: 1.945322e-02	ci left: 8.196101e-02	ci right 8.357326e-02	k: 37244	n:450000
KS ci ratio: 1.001118e-01	ci left: 3.225517e-03	ci right 3.567593e-03	k: 1527	n:450000
HELZ   450000 perm   238 sec   (1891 perm/sec)   p_kst 3.393333e-03   p_cons 8.276444e-02   p_joint 4.895556e-03

Joint ci ratio: 8.223664e-02	ci left: 4.713022e-03	ci right 5.119339e-03	k: 2260	n:460000
Cons ci ratio: 1.923089e-02	ci left: 8.204629e-02	ci right 8.364157e-02	k: 38107	n:460000
KS ci ratio: 9.873125e-02	ci left: 3.246553e-03	ci right 3.585836e-03	k: 1570	n:460000
HELZ   460000 perm   245 sec   (1875 perm/sec)   p_kst 3.413043e-03   p_cons 8.284130e-02   p_joint 4.913043e-03

Outputting figure to mutsig2_images.part000000000078/HELZ.9_5949_460000_0.003413_0.082841_0.004913.png
                gene_name: HELZ
               theta_stop: 0.099 
                    nperm: 460000 
                     p_ks: 0.0034 
        ci_ks_bounds_left: 0.0032 
       ci_ks_bounds_right: 0.0036 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.0049 
     ci_joint_bounds_left: 0.0047 
    ci_joint_bounds_right: 0.0051 

Current progress: 7 percent done.
HELB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.277655e-02	ci left: 7.389648e-01	ci right 7.560908e-01	k: 7476	n:10000
Cons ci ratio: 5.530440e-02	ci left: 3.250533e-01	ci right 3.436433e-01	k: 3343	n:10000
KS ci ratio: 1.081773e-02	ci left: 9.241000e-01	ci right 9.342483e-01	k: 9293	n:10000
HELB   10000 perm   2 sec   (4300 perm/sec)   p_kst 9.293000e-01   p_cons 3.343000e-01   p_joint 7.476000e-01

Outputting figure to mutsig2_images.part000000000078/HELB.8_3316_10000_0.9293_0.3343_0.7476.png
                gene_name: HELB
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 9 percent done.
HERC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.371664e-01	ci left: 7.029921e-02	ci right 8.074967e-02	k: 754	n:10000
Cons ci ratio: 1.094871e-02	ci left: 9.224484e-01	ci right 9.327009e-01	k: 9277	n:10000
KS ci ratio: 2.757973e-01	ci left: 1.706687e-02	ci right 2.261782e-02	k: 197	n:10000
HERC3   10000 perm   2 sec   (4390 perm/sec)   p_kst 1.970000e-02   p_cons 9.277000e-01   p_joint 7.540000e-02

Joint ci ratio: 1.009534e-01	ci left: 6.655043e-02	ci right 7.367517e-02	k: 1401	n:20000
Cons ci ratio: 7.624080e-03	ci left: 9.260690e-01	ci right 9.332054e-01	k: 18594	n:20000
KS ci ratio: 1.932871e-01	ci left: 1.819999e-02	ci right 2.214125e-02	k: 402	n:20000
HERC3   20000 perm   5 sec   (3986 perm/sec)   p_kst 2.010000e-02   p_cons 9.297000e-01   p_joint 7.005000e-02

Joint ci ratio: 9.444866e-02	ci left: 5.172973e-02	ci right 5.689034e-02	k: 1628	n:30000
Cons ci ratio: 6.183159e-03	ci left: 9.276317e-01	ci right 9.334179e-01	k: 27917	n:30000
KS ci ratio: 1.589639e-01	ci left: 1.828556e-02	ci right 2.147505e-02	k: 595	n:30000
HERC3   30000 perm   8 sec   (3631 perm/sec)   p_kst 1.983333e-02   p_cons 9.305667e-01   p_joint 5.426667e-02

Joint ci ratio: 9.814697e-02	ci left: 3.646471e-02	ci right 4.025268e-02	k: 1533	n:40000
Cons ci ratio: 5.620809e-03	ci left: 9.213851e-01	ci right 9.266032e-01	k: 36961	n:40000
KS ci ratio: 1.384395e-01	ci left: 1.828815e-02	ci right 2.103221e-02	k: 785	n:40000
HERC3   40000 perm   11 sec   (3541 perm/sec)   p_kst 1.962500e-02   p_cons 9.240250e-01   p_joint 3.832500e-02

Joint ci ratio: 8.810855e-02	ci left: 3.639972e-02	ci right 3.977418e-02	k: 1903	n:50000
Cons ci ratio: 5.026754e-03	ci left: 9.216831e-01	ci right 9.263475e-01	k: 46202	n:50000
KS ci ratio: 1.244395e-01	ci left: 1.824778e-02	ci right 2.068846e-02	k: 972	n:50000
HERC3   50000 perm   15 sec   (3420 perm/sec)   p_kst 1.944000e-02   p_cons 9.240400e-01   p_joint 3.806000e-02

Joint ci ratio: 7.455071e-02	ci left: 4.240542e-02	ci right 4.570553e-02	k: 2642	n:60000
Cons ci ratio: 4.595458e-03	ci left: 9.216819e-01	ci right 9.259437e-01	k: 55430	n:60000
KS ci ratio: 1.135280e-01	ci left: 1.837615e-02	ci right 2.060401e-02	k: 1168	n:60000
HERC3   60000 perm   18 sec   (3314 perm/sec)   p_kst 1.946667e-02   p_cons 9.238333e-01   p_joint 4.403333e-02

Joint ci ratio: 7.105133e-02	ci left: 4.018888e-02	ci right 4.316355e-02	k: 2916	n:70000
Cons ci ratio: 4.185182e-03	ci left: 9.241516e-01	ci right 9.280415e-01	k: 64828	n:70000
KS ci ratio: 1.052181e-01	ci left: 1.841889e-02	ci right 2.047835e-02	k: 1360	n:70000
HERC3   70000 perm   22 sec   (3201 perm/sec)   p_kst 1.942857e-02   p_cons 9.261143e-01   p_joint 4.165714e-02

Joint ci ratio: 6.190801e-02	ci left: 4.624560e-02	ci right 4.921231e-02	k: 3817	n:80000
Cons ci ratio: 3.923114e-03	ci left: 9.239873e-01	ci right 9.276317e-01	k: 74066	n:80000
KS ci ratio: 9.876079e-02	ci left: 1.835787e-02	ci right 2.027722e-02	k: 1544	n:80000
HERC3   80000 perm   25 sec   (3182 perm/sec)   p_kst 1.930000e-02   p_cons 9.258250e-01   p_joint 4.771250e-02

Outputting figure to mutsig2_images.part000000000078/HERC3.8_3249_80000_0.0193_0.92583_0.047712.png
                gene_name: HERC3
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.049 

Current progress: 11 percent done.
HERC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.953620e-01	ci left: 3.490925e-02	ci right 4.256245e-02	k: 386	n:10000
Cons ci ratio: 1.073740e-01	ci left: 1.112507e-01	ci right 1.239730e-01	k: 1175	n:10000
KS ci ratio: 2.619600e-01	ci left: 1.902780e-02	ci right 2.485533e-02	k: 218	n:10000
HERC5   10000 perm   2 sec   (4131 perm/sec)   p_kst 2.180000e-02   p_cons 1.175000e-01   p_joint 3.860000e-02

Joint ci ratio: 1.856719e-01	ci left: 1.977319e-02	ci right 2.386748e-02	k: 435	n:20000
Cons ci ratio: 7.644287e-02	ci left: 1.117405e-01	ci right 1.206714e-01	k: 2323	n:20000
KS ci ratio: 1.899469e-01	ci left: 1.886701e-02	ci right 2.287398e-02	k: 416	n:20000
HERC5   20000 perm   5 sec   (3801 perm/sec)   p_kst 2.080000e-02   p_cons 1.161500e-01   p_joint 2.175000e-02

Joint ci ratio: 1.712440e-01	ci left: 1.569513e-02	ci right 1.866610e-02	k: 514	n:30000
Cons ci ratio: 6.180548e-02	ci left: 1.145672e-01	ci right 1.219069e-01	k: 3546	n:30000
KS ci ratio: 1.521975e-01	ci left: 1.998476e-02	ci right 2.330878e-02	k: 648	n:30000
HERC5   30000 perm   8 sec   (3652 perm/sec)   p_kst 2.160000e-02   p_cons 1.182000e-01   p_joint 1.713333e-02

Joint ci ratio: 1.316779e-01	ci left: 2.024606e-02	ci right 2.312396e-02	k: 866	n:40000
Cons ci ratio: 5.749077e-02	ci left: 1.011235e-01	ci right 1.071341e-01	k: 4164	n:40000
KS ci ratio: 1.339050e-01	ci left: 1.956886e-02	ci right 2.240128e-02	k: 838	n:40000
HERC5   40000 perm   11 sec   (3525 perm/sec)   p_kst 2.095000e-02   p_cons 1.041000e-01   p_joint 2.165000e-02

Joint ci ratio: 1.124189e-01	ci left: 2.240385e-02	ci right 2.509183e-02	k: 1186	n:50000
Cons ci ratio: 4.998770e-02	ci left: 1.067756e-01	ci right 1.122698e-01	k: 5475	n:50000
KS ci ratio: 1.183781e-01	ci left: 2.018823e-02	ci right 2.274774e-02	k: 1072	n:50000
HERC5   50000 perm   15 sec   (3415 perm/sec)   p_kst 2.144000e-02   p_cons 1.095000e-01   p_joint 2.372000e-02

Joint ci ratio: 1.145821e-01	ci left: 1.803595e-02	ci right 2.024424e-02	k: 1147	n:60000
Cons ci ratio: 4.565266e-02	ci left: 1.069295e-01	ci right 1.119417e-01	k: 6565	n:60000
KS ci ratio: 1.078332e-01	ci left: 2.038673e-02	ci right 2.272653e-02	k: 1292	n:60000
HERC5   60000 perm   18 sec   (3325 perm/sec)   p_kst 2.153333e-02   p_cons 1.094167e-01   p_joint 1.911667e-02

Joint ci ratio: 9.007530e-02	ci left: 2.515500e-02	ci right 2.754162e-02	k: 1843	n:70000
Cons ci ratio: 4.124054e-02	ci left: 1.119518e-01	ci right 1.166802e-01	k: 8001	n:70000
KS ci ratio: 9.971613e-02	ci left: 2.052186e-02	ci right 2.268947e-02	k: 1511	n:70000
HERC5   70000 perm   22 sec   (3247 perm/sec)   p_kst 2.158571e-02   p_cons 1.143000e-01   p_joint 2.632857e-02

Outputting figure to mutsig2_images.part000000000078/HERC5.8_3167_70000_0.021586_0.1143_0.026329.png
                gene_name: HERC5
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.028 

Current progress: 12 percent done.
HGF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.193901e-02	ci left: 4.563836e-01	ci right 4.760361e-01	k: 4662	n:10000
Cons ci ratio: 3.586320e-02	ci left: 5.344770e-01	ci right 5.540972e-01	k: 5443	n:10000
KS ci ratio: 6.256426e-02	ci left: 2.729972e-01	ci right 2.907301e-01	k: 2818	n:10000
HGF   10000 perm   2 sec   (4525 perm/sec)   p_kst 2.818000e-01   p_cons 5.443000e-01   p_joint 4.662000e-01

Outputting figure to mutsig2_images.part000000000078/HGF.8_2279_10000_0.2818_0.5443_0.4662.png
                gene_name: HGF
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 14 percent done.
HEPHL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.315067e-02	ci left: 7.326985e-01	ci right 7.499607e-01	k: 7414	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
HEPHL1   10000 perm   2 sec   (4434 perm/sec)   p_kst 1   p_cons 7.414000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HEPHL1.7_3560_10000_1_0.7414_1.png
                gene_name: HEPHL1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
HERC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.239677e-02	ci left: 4.509930e-01	ci right 4.706299e-01	k: 4608	n:10000
Cons ci ratio: 6.945106e-02	ci left: 2.331377e-01	ci right 2.500131e-01	k: 2415	n:10000
KS ci ratio: 3.687980e-02	ci left: 5.205606e-01	ci right 5.402216e-01	k: 5304	n:10000
HERC6   10000 perm   2 sec   (4489 perm/sec)   p_kst 5.304000e-01   p_cons 2.415000e-01   p_joint 4.608000e-01

Outputting figure to mutsig2_images.part000000000078/HERC6.7_3160_10000_0.5304_0.2415_0.4608.png
                gene_name: HERC6
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 18 percent done.
HEG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.045098e-02	ci left: 2.280016e-01	ci right 2.447522e-01	k: 2363	n:10000
Cons ci ratio: 1.032853e-01	ci left: 1.193599e-01	ci right 1.324588e-01	k: 1258	n:10000
KS ci ratio: 6.672096e-02	ci left: 2.479627e-01	ci right 2.651793e-01	k: 2565	n:10000
HEG1   10000 perm   2 sec   (4319 perm/sec)   p_kst 2.565000e-01   p_cons 1.258000e-01   p_joint 2.363000e-01

Joint ci ratio: 6.063483e-02	ci left: 1.675831e-01	ci right 1.781122e-01	k: 3456	n:20000
Cons ci ratio: 7.080039e-02	ci left: 1.281747e-01	ci right 1.376323e-01	k: 2657	n:20000
KS ci ratio: 4.681717e-02	ci left: 2.534351e-01	ci right 2.656349e-01	k: 5190	n:20000
HEG1   20000 perm   5 sec   (3801 perm/sec)   p_kst 2.595000e-01   p_cons 1.328500e-01   p_joint 1.728000e-01

Outputting figure to mutsig2_images.part000000000078/HEG1.6_4214_20000_0.2595_0.13285_0.1728.png
                gene_name: HEG1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 20 percent done.
HELQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.269826e-01	ci left: 8.144990e-02	ci right 9.259206e-02	k: 869	n:10000
Cons ci ratio: 5.336215e-02	ci left: 3.410438e-01	ci right 3.598434e-01	k: 3504	n:10000
KS ci ratio: 2.357589e-01	ci left: 2.372311e-02	ci right 3.015646e-02	k: 268	n:10000
HELQ   10000 perm   2 sec   (4436 perm/sec)   p_kst 2.680000e-02   p_cons 3.504000e-01   p_joint 8.690000e-02

Joint ci ratio: 1.040601e-01	ci left: 6.279246e-02	ci right 6.973429e-02	k: 1324	n:20000
Cons ci ratio: 3.781152e-02	ci left: 3.428891e-01	ci right 3.561547e-01	k: 6990	n:20000
KS ci ratio: 1.706635e-01	ci left: 2.350321e-02	ci right 2.793614e-02	k: 513	n:20000
HELQ   20000 perm   5 sec   (3983 perm/sec)   p_kst 2.565000e-02   p_cons 3.495000e-01   p_joint 6.620000e-02

Joint ci ratio: 1.189535e-01	ci left: 3.285172e-02	ci right 3.703897e-02	k: 1047	n:30000
Cons ci ratio: 3.104230e-02	ci left: 3.416450e-01	ci right 3.524513e-01	k: 10411	n:30000
KS ci ratio: 1.425090e-01	ci left: 2.284446e-02	ci right 2.638176e-02	k: 737	n:30000
HELQ   30000 perm   8 sec   (3732 perm/sec)   p_kst 2.456667e-02   p_cons 3.470333e-01   p_joint 3.490000e-02

Joint ci ratio: 7.836272e-02	ci left: 5.656326e-02	ci right 6.120104e-02	k: 2354	n:40000
Cons ci ratio: 2.572302e-02	ci left: 3.625731e-01	ci right 3.720462e-01	k: 14692	n:40000
KS ci ratio: 1.215923e-01	ci left: 2.378312e-02	ci right 2.688631e-02	k: 1012	n:40000
HELQ   40000 perm   11 sec   (3581 perm/sec)   p_kst 2.530000e-02   p_cons 3.673000e-01   p_joint 5.885000e-02

Joint ci ratio: 8.268245e-02	ci left: 4.123849e-02	ci right 4.481481e-02	k: 2150	n:50000
Cons ci ratio: 2.298684e-02	ci left: 3.634913e-01	ci right 3.719640e-01	k: 18386	n:50000
KS ci ratio: 1.093889e-01	ci left: 2.366863e-02	ci right 2.642689e-02	k: 1251	n:50000
HELQ   50000 perm   14 sec   (3491 perm/sec)   p_kst 2.502000e-02   p_cons 3.677200e-01   p_joint 4.300000e-02

Joint ci ratio: 8.261403e-02	ci left: 3.467055e-02	ci right 3.767453e-02	k: 2169	n:60000
Cons ci ratio: 2.104763e-02	ci left: 3.624598e-01	ci right 3.701865e-01	k: 21979	n:60000
KS ci ratio: 1.000426e-01	ci left: 2.370041e-02	ci right 2.621250e-02	k: 1496	n:60000
HELQ   60000 perm   18 sec   (3404 perm/sec)   p_kst 2.493333e-02   p_cons 3.663167e-01   p_joint 3.615000e-02

Joint ci ratio: 7.521076e-02	ci left: 3.595036e-02	ci right 3.877387e-02	k: 2614	n:70000
Cons ci ratio: 1.946914e-02	ci left: 3.631570e-01	ci right 3.703112e-01	k: 25671	n:70000
KS ci ratio: 9.296335e-02	ci left: 2.361865e-02	ci right 2.593526e-02	k: 1733	n:70000
HELQ   70000 perm   21 sec   (3326 perm/sec)   p_kst 2.475714e-02   p_cons 3.667286e-01   p_joint 3.734286e-02

Outputting figure to mutsig2_images.part000000000078/HELQ.6_3378_70000_0.024757_0.36673_0.037343.png
                gene_name: HELQ
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 21 percent done.
HERC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.979036e-02	ci left: 7.888790e-01	ci right 8.047477e-01	k: 7969	n:10000
Cons ci ratio: 8.123819e-03	ci left: 9.548231e-01	ci right 9.627068e-01	k: 9589	n:10000
KS ci ratio: 4.340871e-02	ci left: 4.393171e-01	ci right 4.589126e-01	k: 4491	n:10000
HERC4   10000 perm   2 sec   (4024 perm/sec)   p_kst 4.491000e-01   p_cons 9.589000e-01   p_joint 7.969000e-01

Outputting figure to mutsig2_images.part000000000078/HERC4.6_3270_10000_0.4491_0.9589_0.7969.png
                gene_name: HERC4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 23 percent done.
HEY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.356182e-01	ci left: 7.184865e-02	ci right 8.239926e-02	k: 770	n:10000
Cons ci ratio: 2.716280e-01	ci left: 1.762636e-02	ci right 2.325787e-02	k: 203	n:10000
KS ci ratio: 5.162669e-02	ci left: 3.561511e-01	ci right 3.751272e-01	k: 3656	n:10000
HEY2   10000 perm   2 sec   (5491 perm/sec)   p_kst 3.656000e-01   p_cons 2.030000e-02   p_joint 7.700000e-02

Joint ci ratio: 1.136954e-01	ci left: 5.290189e-02	ci right 5.932793e-02	k: 1121	n:20000
Cons ci ratio: 1.952745e-01	ci left: 1.781911e-02	ci right 2.172227e-02	k: 394	n:20000
KS ci ratio: 3.639554e-02	ci left: 3.603647e-01	ci right 3.737740e-01	k: 7341	n:20000
HEY2   20000 perm   4 sec   (4840 perm/sec)   p_kst 3.670500e-01   p_cons 1.970000e-02   p_joint 5.605000e-02

Joint ci ratio: 8.488528e-02	ci left: 6.354265e-02	ci right 6.920834e-02	k: 1990	n:30000
Cons ci ratio: 1.606216e-01	ci left: 1.790127e-02	ci right 2.105943e-02	k: 583	n:30000
KS ci ratio: 2.982153e-02	ci left: 3.599807e-01	ci right 3.709120e-01	k: 10963	n:30000
HEY2   30000 perm   6 sec   (4681 perm/sec)   p_kst 3.654333e-01   p_cons 1.943333e-02   p_joint 6.633333e-02

Joint ci ratio: 8.041469e-02	ci left: 5.381565e-02	ci right 5.834906e-02	k: 2242	n:40000
Cons ci ratio: 1.427612e-01	ci left: 1.717789e-02	ci right 1.984267e-02	k: 739	n:40000
KS ci ratio: 2.571058e-02	ci left: 3.627975e-01	ci right 3.722718e-01	k: 14701	n:40000
HEY2   40000 perm   9 sec   (4570 perm/sec)   p_kst 3.675250e-01   p_cons 1.847500e-02   p_joint 5.605000e-02

Joint ci ratio: 7.483618e-02	ci left: 5.006994e-02	ci right 5.398228e-02	k: 2600	n:50000
Cons ci ratio: 1.265104e-01	ci left: 1.764690e-02	ci right 2.004942e-02	k: 941	n:50000
KS ci ratio: 2.275628e-02	ci left: 3.681800e-01	ci right 3.766749e-01	k: 18621	n:50000
HEY2   50000 perm   11 sec   (4512 perm/sec)   p_kst 3.724200e-01   p_cons 1.882000e-02   p_joint 5.200000e-02

Joint ci ratio: 6.640942e-02	ci left: 5.305779e-02	ci right 5.671874e-02	k: 3292	n:60000
Cons ci ratio: 1.154047e-01	ci left: 1.777682e-02	ci right 1.997007e-02	k: 1131	n:60000
KS ci ratio: 2.082132e-02	ci left: 3.674819e-01	ci right 3.752305e-01	k: 22281	n:60000
HEY2   60000 perm   14 sec   (4436 perm/sec)   p_kst 3.713500e-01   p_cons 1.885000e-02   p_joint 5.486667e-02

Joint ci ratio: 6.766035e-02	ci left: 4.420685e-02	ci right 4.731666e-02	k: 3202	n:70000
Cons ci ratio: 1.051000e-01	ci left: 1.846065e-02	ci right 2.052231e-02	k: 1363	n:70000
KS ci ratio: 1.928899e-02	ci left: 3.674767e-01	ci right 3.746483e-01	k: 25974	n:70000
HEY2   70000 perm   16 sec   (4371 perm/sec)   p_kst 3.710571e-01   p_cons 1.947143e-02   p_joint 4.574286e-02

Joint ci ratio: 6.104817e-02	ci left: 4.751426e-02	ci right 5.051855e-02	k: 3920	n:80000
Cons ci ratio: 9.885870e-02	ci left: 1.832128e-02	ci right 2.023881e-02	k: 1541	n:80000
KS ci ratio: 1.799965e-02	ci left: 3.688363e-01	ci right 3.755480e-01	k: 29775	n:80000
HEY2   80000 perm   19 sec   (4298 perm/sec)   p_kst 3.721875e-01   p_cons 1.926250e-02   p_joint 4.900000e-02

Outputting figure to mutsig2_images.part000000000078/HEY2.6_1034_80000_0.37219_0.019262_0.049.png
                gene_name: HEY2
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.051 

Current progress: 25 percent done.
HGSNAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.437322e-02	ci left: 2.092502e-01	ci right 2.255148e-01	k: 2173	n:10000
Cons ci ratio: 1.266640e-01	ci left: 8.183830e-02	ci right 9.300341e-02	k: 873	n:10000
KS ci ratio: 4.919105e-02	ci left: 3.787315e-01	ci right 3.979336e-01	k: 3883	n:10000
HGSNAT   10000 perm   2 sec   (4760 perm/sec)   p_kst 3.883000e-01   p_cons 8.730000e-02   p_joint 2.173000e-01

Joint ci ratio: 5.338344e-02	ci left: 2.066497e-01	ci right 2.180341e-01	k: 4246	n:20000
Cons ci ratio: 8.620424e-02	ci left: 8.964657e-02	ci right 9.777200e-02	k: 1873	n:20000
KS ci ratio: 3.483806e-02	ci left: 3.808396e-01	ci right 3.943931e-01	k: 7752	n:20000
HGSNAT   20000 perm   5 sec   (4395 perm/sec)   p_kst 3.876000e-01   p_cons 9.365000e-02   p_joint 2.123000e-01

Outputting figure to mutsig2_images.part000000000078/HGSNAT.6_1980_20000_0.3876_0.09365_0.2123.png
                gene_name: HGSNAT
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 27 percent done.
HIF3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.021762e-02	ci left: 2.291867e-01	ci right 2.459664e-01	k: 2375	n:10000
Cons ci ratio: 3.892077e-02	ci left: 4.936506e-01	ci right 5.133474e-01	k: 5035	n:10000
KS ci ratio: 8.830905e-02	ci left: 1.572823e-01	ci right 1.719136e-01	k: 1645	n:10000
HIF3A   10000 perm   2 sec   (5258 perm/sec)   p_kst 1.645000e-01   p_cons 5.035000e-01   p_joint 2.375000e-01

Outputting figure to mutsig2_images.part000000000078/HIF3A.6_2094_10000_0.1645_0.5035_0.2375.png
                gene_name: HIF3A
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 29 percent done.
HIPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.566438e-02	ci left: 2.035310e-01	ci right 2.196374e-01	k: 2115	n:10000
Cons ci ratio: 3.189000e-02	ci left: 5.920266e-01	ci right 6.113142e-01	k: 6017	n:10000
KS ci ratio: 1.195989e-01	ci left: 9.117000e-02	ci right 1.028660e-01	k: 969	n:10000
HIPK1   10000 perm   2 sec   (4364 perm/sec)   p_kst 9.690000e-02   p_cons 6.017000e-01   p_joint 2.115000e-01

Joint ci ratio: 6.177228e-02	ci left: 1.623977e-01	ci right 1.727991e-01	k: 3351	n:20000
Cons ci ratio: 2.265448e-02	ci left: 5.926700e-01	ci right 6.063011e-01	k: 11990	n:20000
KS ci ratio: 8.290107e-02	ci left: 9.636635e-02	ci right 1.047502e-01	k: 2010	n:20000
HIPK1   20000 perm   5 sec   (3958 perm/sec)   p_kst 1.005000e-01   p_cons 5.995000e-01   p_joint 1.675500e-01

Outputting figure to mutsig2_images.part000000000078/HIPK1.6_3795_20000_0.1005_0.5995_0.16755.png
                gene_name: HIPK1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 30 percent done.
HELLS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.103697e-02	ci left: 7.681038e-01	ci right 7.845349e-01	k: 7764	n:10000
Cons ci ratio: 6.092113e-02	ci left: 2.837935e-01	ci right 3.017273e-01	k: 2927	n:10000
KS ci ratio: 1.016190e-02	ci left: 9.321629e-01	ci right 9.417806e-01	k: 9371	n:10000
HELLS   10000 perm   2 sec   (4860 perm/sec)   p_kst 9.371000e-01   p_cons 2.927000e-01   p_joint 7.764000e-01

Outputting figure to mutsig2_images.part000000000078/HELLS.5_2605_10000_0.9371_0.2927_0.7764.png
                gene_name: HELLS
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 32 percent done.
HEMGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.428612e-02	ci left: 8.763339e-01	ci right 8.890423e-01	k: 8828	n:10000
Cons ci ratio: 3.978639e-02	ci left: 4.826547e-01	ci right 5.023497e-01	k: 4925	n:10000
KS ci ratio: 1.227943e-02	ci left: 9.049403e-01	ci right 9.162192e-01	k: 9107	n:10000
HEMGN   10000 perm   2 sec   (4802 perm/sec)   p_kst 9.107000e-01   p_cons 4.925000e-01   p_joint 8.828000e-01

Outputting figure to mutsig2_images.part000000000078/HEMGN.5_1471_10000_0.9107_0.4925_0.8828.png
                gene_name: HEMGN
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 34 percent done.
HHAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.362865e-02	ci left: 4.368230e-01	ci right 4.564081e-01	k: 4466	n:10000
Cons ci ratio: 6.679098e-02	ci left: 2.475672e-01	ci right 2.647751e-01	k: 2561	n:10000
KS ci ratio: 5.111871e-02	ci left: 3.607251e-01	ci right 3.797506e-01	k: 3702	n:10000
HHAT   10000 perm   2 sec   (5092 perm/sec)   p_kst 3.702000e-01   p_cons 2.561000e-01   p_joint 4.466000e-01

Outputting figure to mutsig2_images.part000000000078/HHAT.5_1624_10000_0.3702_0.2561_0.4466.png
                gene_name: HHAT
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 36 percent done.
HHIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.002142e-02	ci left: 2.899374e-01	ci right 3.079799e-01	k: 2989	n:10000
Cons ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
KS ci ratio: 1.654673e-02	ci left: 8.416271e-01	ci right 8.557691e-01	k: 8488	n:10000
HHIP   10000 perm   2 sec   (5002 perm/sec)   p_kst 8.488000e-01   p_cons 1.050000e-01   p_joint 2.989000e-01

Joint ci ratio: 2.714593e-02	ci left: 5.034459e-01	ci right 5.173511e-01	k: 10208	n:20000
Cons ci ratio: 8.418691e-02	ci left: 9.366788e-02	ci right 1.019495e-01	k: 1955	n:20000
KS ci ratio: 1.177696e-02	ci left: 8.420369e-01	ci right 8.520620e-01	k: 16942	n:20000
HHIP   20000 perm   4 sec   (4642 perm/sec)   p_kst 8.471000e-01   p_cons 9.775000e-02   p_joint 5.104000e-01

Outputting figure to mutsig2_images.part000000000078/HHIP.5_2155_20000_0.8471_0.09775_0.5104.png
                gene_name: HHIP
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 38 percent done.
HHIPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.659946e-02	ci left: 5.243644e-01	ci right 5.440157e-01	k: 5342	n:10000
Cons ci ratio: 2.612611e-02	ci left: 6.832497e-01	ci right 7.014381e-01	k: 6924	n:10000
KS ci ratio: 5.289665e-02	ci left: 3.450184e-01	ci right 3.638665e-01	k: 3544	n:10000
HHIPL2   10000 perm   2 sec   (5125 perm/sec)   p_kst 3.544000e-01   p_cons 6.924000e-01   p_joint 5.342000e-01

Outputting figure to mutsig2_images.part000000000078/HHIPL2.5_2211_10000_0.3544_0.6924_0.5342.png
                gene_name: HHIPL2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 39 percent done.
HIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.441419e-02	ci left: 7.115912e-01	ci right 7.292802e-01	k: 7205	n:10000
Cons ci ratio: 5.743326e-02	ci left: 3.085789e-01	ci right 3.269274e-01	k: 3177	n:10000
KS ci ratio: 2.560606e-02	ci left: 6.918185e-01	ci right 7.098644e-01	k: 7009	n:10000
HIP1   10000 perm   2 sec   (4287 perm/sec)   p_kst 7.009000e-01   p_cons 3.177000e-01   p_joint 7.205000e-01

Outputting figure to mutsig2_images.part000000000078/HIP1.5_3238_10000_0.7009_0.3177_0.7205.png
                gene_name: HIP1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 41 percent done.
HEPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.610910e-02	ci left: 3.187002e-01	ci right 3.372001e-01	k: 3279	n:10000
Cons ci ratio: 1.702089e-02	ci left: 8.340910e-01	ci right 8.485096e-01	k: 8414	n:10000
KS ci ratio: 9.194552e-02	ci left: 1.466828e-01	ci right 1.609195e-01	k: 1537	n:10000
HEPH   10000 perm   2 sec   (4495 perm/sec)   p_kst 1.537000e-01   p_cons 8.414000e-01   p_joint 3.279000e-01

Outputting figure to mutsig2_images.part000000000078/HEPH.4_3723_10000_0.1537_0.8414_0.3279.png
                gene_name: HEPH
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 43 percent done.
HINFP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.241134e-01	ci left: 8.504395e-02	ci right 9.639578e-02	k: 906	n:10000
Cons ci ratio: 8.184094e-02	ci left: 1.789079e-01	ci right 1.942751e-01	k: 1865	n:10000
KS ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
HINFP   10000 perm   2 sec   (5412 perm/sec)   p_kst 3.600000e-02   p_cons 1.865000e-01   p_joint 9.060000e-02

Joint ci ratio: 9.258836e-02	ci left: 7.842928e-02	ci right 8.609269e-02	k: 1644	n:20000
Cons ci ratio: 5.682515e-02	ci left: 1.867097e-01	ci right 1.976799e-01	k: 3843	n:20000
KS ci ratio: 1.399415e-01	ci left: 3.510267e-02	ci right 4.043280e-02	k: 754	n:20000
HINFP   20000 perm   4 sec   (4733 perm/sec)   p_kst 3.770000e-02   p_cons 1.921500e-01   p_joint 8.220000e-02

Joint ci ratio: 8.928937e-02	ci left: 5.766500e-02	ci right 6.308720e-02	k: 1810	n:30000
Cons ci ratio: 4.627855e-02	ci left: 1.885143e-01	ci right 1.974785e-01	k: 5789	n:30000
KS ci ratio: 1.161132e-01	ci left: 3.447105e-02	ci right 3.875263e-02	k: 1097	n:30000
HINFP   30000 perm   7 sec   (4358 perm/sec)   p_kst 3.656667e-02   p_cons 1.929667e-01   p_joint 6.033333e-02

Joint ci ratio: 7.137191e-02	ci left: 6.761673e-02	ci right 7.264590e-02	k: 2804	n:40000
Cons ci ratio: 4.004956e-02	ci left: 1.893408e-01	ci right 1.971038e-01	k: 7728	n:40000
KS ci ratio: 1.015699e-01	ci left: 3.407370e-02	ci right 3.774407e-02	k: 1435	n:40000
HINFP   40000 perm   9 sec   (4256 perm/sec)   p_kst 3.587500e-02   p_cons 1.932000e-01   p_joint 7.010000e-02

Joint ci ratio: 5.765084e-02	ci left: 8.219467e-02	ci right 8.709368e-02	k: 4231	n:50000
Cons ci ratio: 3.577386e-02	ci left: 1.901644e-01	ci right 1.971112e-01	k: 9681	n:50000
KS ci ratio: 9.111062e-02	ci left: 3.407113e-02	ci right 3.734306e-02	k: 1784	n:50000
HINFP   50000 perm   12 sec   (4158 perm/sec)   p_kst 3.568000e-02   p_cons 1.936200e-01   p_joint 8.462000e-02

Outputting figure to mutsig2_images.part000000000078/HINFP.4_1590_50000_0.03568_0.19362_0.08462.png
                gene_name: HINFP
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.087 

Current progress: 45 percent done.
HIPK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.658696e-02	ci left: 6.756920e-01	ci right 6.940002e-01	k: 6849	n:10000
Cons ci ratio: 6.199738e-02	ci left: 2.766613e-01	ci right 2.944638e-01	k: 2855	n:10000
KS ci ratio: 2.085518e-02	ci left: 7.711422e-01	ci right 7.874947e-01	k: 7794	n:10000
HIPK2   10000 perm   2 sec   (4765 perm/sec)   p_kst 7.794000e-01   p_cons 2.855000e-01   p_joint 6.849000e-01

Outputting figure to mutsig2_images.part000000000078/HIPK2.4_3657_10000_0.7794_0.2855_0.6849.png
                gene_name: HIPK2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 46 percent done.
HIPK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.683115e-02	ci left: 4.022303e-01	ci right 4.216210e-01	k: 4119	n:10000
Cons ci ratio: 1.049122e-01	ci left: 1.160369e-01	ci right 1.289839e-01	k: 1224	n:10000
KS ci ratio: 1.799302e-02	ci left: 8.184250e-01	ci right 8.333847e-01	k: 8260	n:10000
HIPK3   10000 perm   2 sec   (4653 perm/sec)   p_kst 8.260000e-01   p_cons 1.224000e-01   p_joint 4.119000e-01

Joint ci ratio: 3.304605e-02	ci left: 4.061144e-01	ci right 4.198109e-01	k: 8259	n:20000
Cons ci ratio: 7.558075e-02	ci left: 1.140515e-01	ci right 1.230598e-01	k: 2370	n:20000
KS ci ratio: 1.192206e-02	ci left: 8.387949e-01	ci right 8.489049e-01	k: 16878	n:20000
HIPK3   20000 perm   5 sec   (4183 perm/sec)   p_kst 8.439000e-01   p_cons 1.185000e-01   p_joint 4.129500e-01

Outputting figure to mutsig2_images.part000000000078/HIPK3.4_3712_20000_0.8439_0.1185_0.41295.png
                gene_name: HIPK3
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 48 percent done.
HIST1H1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.934937e-02	ci left: 7.961830e-01	ci right 8.118395e-01	k: 8041	n:10000
KS ci ratio: 5.245524e-03	ci left: 9.797349e-01	ci right 9.849787e-01	k: 9825	n:10000
HIST1H1A   10000 perm   2 sec   (6095 perm/sec)   p_kst 9.825000e-01   p_cons 8.041000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HIST1H1A.4_652_10000_0.9825_0.8041_1.png
                gene_name: HIST1H1A
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
HEPACAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.095758e-01	ci left: 3.024949e-02	ci right 3.742541e-02	k: 337	n:10000
Cons ci ratio: 3.880608e-01	ci left: 8.143597e-03	ci right 1.214950e-02	k: 100	n:10000
KS ci ratio: 2.897138e-02	ci left: 6.372398e-01	ci right 6.560747e-01	k: 6467	n:10000
HEPACAM2   10000 perm   2 sec   (5426 perm/sec)   p_kst 6.467000e-01   p_cons 1.000000e-02   p_joint 3.370000e-02

Joint ci ratio: 1.613936e-01	ci left: 2.633371e-02	ci right 3.100466e-02	k: 572	n:20000
Cons ci ratio: 2.908546e-01	ci left: 7.691529e-03	ci right 1.035416e-02	k: 179	n:20000
KS ci ratio: 2.031222e-02	ci left: 6.439458e-01	ci right 6.572104e-01	k: 13012	n:20000
HEPACAM2   20000 perm   4 sec   (4985 perm/sec)   p_kst 6.506000e-01   p_cons 8.950000e-03   p_joint 2.860000e-02

Joint ci ratio: 1.147108e-01	ci left: 3.531357e-02	ci right 3.964326e-02	k: 1123	n:30000
Cons ci ratio: 2.370412e-01	ci left: 7.962418e-03	ci right 1.013426e-02	k: 270	n:30000
KS ci ratio: 1.650491e-02	ci left: 6.473815e-01	ci right 6.581889e-01	k: 19584	n:30000
HEPACAM2   30000 perm   6 sec   (4726 perm/sec)   p_kst 6.528000e-01   p_cons 9.000000e-03   p_joint 3.743333e-02

Joint ci ratio: 1.256607e-01	ci left: 2.225571e-02	ci right 2.526398e-02	k: 949	n:40000
Cons ci ratio: 2.045243e-01	ci left: 8.168963e-03	ci right 1.005334e-02	k: 363	n:40000
KS ci ratio: 1.427880e-02	ci left: 6.485875e-01	ci right 6.579402e-01	k: 26131	n:40000
HEPACAM2   40000 perm   9 sec   (4587 perm/sec)   p_kst 6.532750e-01   p_cons 9.075000e-03   p_joint 2.372500e-02

Joint ci ratio: 7.776611e-02	ci left: 4.647627e-02	ci right 5.025639e-02	k: 2417	n:50000
Cons ci ratio: 1.856276e-01	ci left: 8.019069e-03	ci right 9.678709e-03	k: 441	n:50000
KS ci ratio: 1.276167e-02	ci left: 6.494305e-01	ci right 6.577916e-01	k: 32681	n:50000
HEPACAM2   50000 perm   11 sec   (4399 perm/sec)   p_kst 6.536200e-01   p_cons 8.820000e-03   p_joint 4.834000e-02

Joint ci ratio: 7.005184e-02	ci left: 4.785983e-02	ci right 5.135057e-02	k: 2975	n:60000
Cons ci ratio: 1.700049e-01	ci left: 8.036275e-03	ci right 9.545148e-03	k: 526	n:60000
KS ci ratio: 1.163402e-02	ci left: 6.504119e-01	ci right 6.580398e-01	k: 39254	n:60000
HEPACAM2   60000 perm   14 sec   (4174 perm/sec)   p_kst 6.542333e-01   p_cons 8.766667e-03   p_joint 4.958333e-02

Joint ci ratio: 7.579988e-02	ci left: 3.540336e-02	ci right 3.820663e-02	k: 2575	n:70000
Cons ci ratio: 1.576314e-01	ci left: 8.066503e-03	ci right 9.460389e-03	k: 612	n:70000
KS ci ratio: 1.078917e-02	ci left: 6.499328e-01	ci right 6.569973e-01	k: 45743	n:70000
HEPACAM2   70000 perm   17 sec   (4068 perm/sec)   p_kst 6.534714e-01   p_cons 8.742857e-03   p_joint 3.678571e-02

Joint ci ratio: 6.691104e-02	ci left: 3.975935e-02	ci right 4.252405e-02	k: 3290	n:80000
Cons ci ratio: 1.475115e-01	ci left: 8.104217e-03	ci right 9.406784e-03	k: 699	n:80000
KS ci ratio: 1.009785e-02	ci left: 6.499152e-01	ci right 6.565237e-01	k: 52258	n:80000
HEPACAM2   80000 perm   20 sec   (4028 perm/sec)   p_kst 6.532250e-01   p_cons 8.737500e-03   p_joint 4.112500e-02

Joint ci ratio: 6.384692e-02	ci left: 3.891504e-02	ci right 4.149249e-02	k: 3617	n:90000
Cons ci ratio: 1.393881e-01	ci left: 8.103600e-03	ci right 9.328381e-03	k: 783	n:90000
KS ci ratio: 9.520884e-03	ci left: 6.500801e-01	ci right 6.563101e-01	k: 58788	n:90000
HEPACAM2   90000 perm   23 sec   (3989 perm/sec)   p_kst 6.532000e-01   p_cons 8.700000e-03   p_joint 4.018889e-02

Joint ci ratio: 6.596401e-02	ci left: 3.298369e-02	ci right 3.524344e-02	k: 3410	n:100000
Cons ci ratio: 1.323972e-01	ci left: 8.114356e-03	ci right 9.274411e-03	k: 868	n:100000
KS ci ratio: 9.024738e-03	ci left: 6.506214e-01	ci right 6.565297e-01	k: 65358	n:100000
HEPACAM2   100000 perm   25 sec   (3949 perm/sec)   p_kst 6.535800e-01   p_cons 8.680000e-03   p_joint 3.410000e-02

Joint ci ratio: 6.236360e-02	ci left: 3.359037e-02	ci right 3.576153e-02	k: 3813	n:110000
Cons ci ratio: 1.263626e-01	ci left: 8.124414e-03	ci right 9.228998e-03	k: 953	n:110000
KS ci ratio: 8.602304e-03	ci left: 6.508889e-01	ci right 6.565212e-01	k: 71908	n:110000
HEPACAM2   110000 perm   28 sec   (3896 perm/sec)   p_kst 6.537091e-01   p_cons 8.663636e-03   p_joint 3.466364e-02

Joint ci ratio: 5.446325e-02	ci left: 4.025512e-02	ci right 4.251711e-02	k: 4965	n:120000
Cons ci ratio: 1.213794e-01	ci left: 8.093384e-03	ci right 9.147236e-03	k: 1033	n:120000
KS ci ratio: 8.240646e-03	ci left: 6.507581e-01	ci right 6.561512e-01	k: 78415	n:120000
HEPACAM2   120000 perm   31 sec   (3846 perm/sec)   p_kst 6.534583e-01   p_cons 8.608333e-03   p_joint 4.137500e-02

Joint ci ratio: 5.512159e-02	ci left: 3.641301e-02	ci right 3.848461e-02	k: 4867	n:130000
Cons ci ratio: 1.175294e-01	ci left: 7.985701e-03	ci right 8.990255e-03	k: 1102	n:130000
KS ci ratio: 7.916901e-03	ci left: 6.508906e-01	ci right 6.560718e-01	k: 84953	n:130000
HEPACAM2   130000 perm   35 sec   (3766 perm/sec)   p_kst 6.534846e-01   p_cons 8.476923e-03   p_joint 3.743846e-02

Joint ci ratio: 5.616764e-02	ci left: 3.267628e-02	ci right 3.457168e-02	k: 4706	n:140000
Cons ci ratio: 1.131987e-01	ci left: 8.011862e-03	ci right 8.980089e-03	k: 1188	n:140000
KS ci ratio: 7.628661e-03	ci left: 6.510006e-01	ci right 6.559930e-01	k: 91490	n:140000
HEPACAM2   140000 perm   38 sec   (3711 perm/sec)   p_kst 6.535000e-01   p_cons 8.485714e-03   p_joint 3.361429e-02

Joint ci ratio: 5.260307e-02	ci left: 3.476012e-02	ci right 3.664455e-02	k: 5354	n:150000
Cons ci ratio: 1.095744e-01	ci left: 7.996209e-03	ci right 8.929607e-03	k: 1268	n:150000
KS ci ratio: 7.371292e-03	ci left: 6.510055e-01	ci right 6.558286e-01	k: 98013	n:150000
HEPACAM2   150000 perm   41 sec   (3649 perm/sec)   p_kst 6.534200e-01   p_cons 8.453333e-03   p_joint 3.569333e-02

Joint ci ratio: 5.364064e-02	ci left: 3.143291e-02	ci right 3.317160e-02	k: 5167	n:160000
Cons ci ratio: 1.064365e-01	ci left: 7.958607e-03	ci right 8.859343e-03	k: 1344	n:160000
KS ci ratio: 7.132419e-03	ci left: 6.513878e-01	ci right 6.560566e-01	k: 104596	n:160000
HEPACAM2   160000 perm   45 sec   (3594 perm/sec)   p_kst 6.537250e-01   p_cons 8.400000e-03   p_joint 3.229375e-02

Joint ci ratio: 5.209301e-02	ci left: 3.139493e-02	ci right 3.307990e-02	k: 5479	n:170000
Cons ci ratio: 1.034802e-01	ci left: 7.937228e-03	ci right 8.809075e-03	k: 1422	n:170000
KS ci ratio: 6.928390e-03	ci left: 6.508731e-01	ci right 6.554041e-01	k: 111034	n:170000
HEPACAM2   170000 perm   48 sec   (3545 perm/sec)   p_kst 6.531412e-01   p_cons 8.364706e-03   p_joint 3.222941e-02

Joint ci ratio: 4.861530e-02	ci left: 3.401296e-02	ci right 3.571317e-02	k: 6274	n:180000
Cons ci ratio: 1.006221e-01	ci left: 7.940200e-03	ci right 8.786860e-03	k: 1504	n:180000
KS ci ratio: 6.741148e-03	ci left: 6.504007e-01	ci right 6.548055e-01	k: 117469	n:180000
HEPACAM2   180000 perm   52 sec   (3486 perm/sec)   p_kst 6.526056e-01   p_cons 8.355556e-03   p_joint 3.485556e-02

Joint ci ratio: 4.748834e-02	ci left: 3.379829e-02	ci right 3.544753e-02	k: 6577	n:190000
Cons ci ratio: 9.852203e-02	ci left: 7.855863e-03	ci right 8.675036e-03	k: 1569	n:190000
KS ci ratio: 6.561358e-03	ci left: 6.504594e-01	ci right 6.547465e-01	k: 123995	n:190000
HEPACAM2   190000 perm   55 sec   (3440 perm/sec)   p_kst 6.526053e-01   p_cons 8.257895e-03   p_joint 3.461579e-02

Outputting figure to mutsig2_images.part000000000078/HEPACAM2.3_1472_190000_0.65261_0.0082579_0.034616.png
                gene_name: HEPACAM2
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.0083 
      ci_cons_bounds_left: 0.0079 
     ci_cons_bounds_right: 0.0087 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.035 

Current progress: 52 percent done.
HEXB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.048516e-02	ci left: 9.282324e-01	ci right 9.381134e-01	k: 9333	n:10000
Cons ci ratio: 1.387591e-02	ci left: 8.823723e-01	ci right 8.948003e-01	k: 8887	n:10000
KS ci ratio: 3.134726e-02	ci left: 6.002590e-01	ci right 6.194770e-01	k: 6099	n:10000
HEXB   10000 perm   2 sec   (5253 perm/sec)   p_kst 6.099000e-01   p_cons 8.887000e-01   p_joint 9.333000e-01

Outputting figure to mutsig2_images.part000000000078/HEXB.3_1727_10000_0.6099_0.8887_0.9333.png
                gene_name: HEXB
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 54 percent done.
HEY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.320867e-03	ci left: 9.791993e-01	ci right 9.845147e-01	k: 9820	n:10000
Cons ci ratio: 2.659928e-02	ci left: 6.754905e-01	ci right 6.938018e-01	k: 6847	n:10000
KS ci ratio: 2.193174e-02	ci left: 7.531230e-01	ci right 7.699244e-01	k: 7616	n:10000
HEY1   10000 perm   2 sec   (5468 perm/sec)   p_kst 7.616000e-01   p_cons 6.847000e-01   p_joint 9.820000e-01

Outputting figure to mutsig2_images.part000000000078/HEY1.3_947_10000_0.7616_0.6847_0.982.png
                gene_name: HEY1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 55 percent done.
HFE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.138976e-01	ci left: 9.983694e-02	ci right 1.119937e-01	k: 1058	n:10000
Cons ci ratio: 9.846546e-02	ci left: 1.300234e-01	ci right 1.435889e-01	k: 1367	n:10000
KS ci ratio: 1.024951e-01	ci left: 1.210221e-01	ci right 1.341957e-01	k: 1275	n:10000
HFE   10000 perm   2 sec   (6236 perm/sec)   p_kst 1.275000e-01   p_cons 1.367000e-01   p_joint 1.058000e-01

Joint ci ratio: 9.021867e-02	ci left: 8.234569e-02	ci right 9.017509e-02	k: 1724	n:20000
Cons ci ratio: 6.984875e-02	ci left: 1.312774e-01	ci right 1.408286e-01	k: 2720	n:20000
KS ci ratio: 7.157880e-02	ci left: 1.257128e-01	ci right 1.350949e-01	k: 2607	n:20000
HFE   20000 perm   4 sec   (5469 perm/sec)   p_kst 1.303500e-01   p_cons 1.360000e-01   p_joint 8.620000e-02

Outputting figure to mutsig2_images.part000000000078/HFE.3_1071_20000_0.13035_0.136_0.0862.png
                gene_name: HFE
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.090 

Current progress: 57 percent done.
HFE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.901581e-02	ci left: 1.896376e-01	ci right 2.053390e-01	k: 1974	n:10000
Cons ci ratio: 7.635134e-02	ci left: 2.005737e-01	ci right 2.165964e-01	k: 2085	n:10000
KS ci ratio: 6.177028e-02	ci left: 2.781469e-01	ci right 2.959773e-01	k: 2870	n:10000
HFE2   10000 perm   2 sec   (6315 perm/sec)   p_kst 2.870000e-01   p_cons 2.085000e-01   p_joint 1.974000e-01

Outputting figure to mutsig2_images.part000000000078/HFE2.3_1293_10000_0.287_0.2085_0.1974.png
                gene_name: HFE2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 59 percent done.
HHLA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.092113e-02	ci left: 2.837935e-01	ci right 3.017273e-01	k: 2927	n:10000
Cons ci ratio: 3.592830e-02	ci left: 5.335757e-01	ci right 5.531990e-01	k: 5434	n:10000
KS ci ratio: 7.128045e-02	ci left: 2.238545e-01	ci right 2.405018e-01	k: 2321	n:10000
HHLA3   10000 perm   2 sec   (6509 perm/sec)   p_kst 2.321000e-01   p_cons 5.434000e-01   p_joint 2.927000e-01

Outputting figure to mutsig2_images.part000000000078/HHLA3.3_475_10000_0.2321_0.5434_0.2927.png
                gene_name: HHLA3
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 61 percent done.
HIF1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.655618e-02	ci left: 6.761958e-01	ci right 6.944962e-01	k: 6854	n:10000
Cons ci ratio: 5.953818e-02	ci left: 2.933074e-01	ci right 3.114079e-01	k: 3023	n:10000
KS ci ratio: 3.825701e-02	ci left: 5.022507e-01	ci right 5.219422e-01	k: 5121	n:10000
HIF1A   10000 perm   2 sec   (4961 perm/sec)   p_kst 5.121000e-01   p_cons 3.023000e-01   p_joint 6.854000e-01

Outputting figure to mutsig2_images.part000000000078/HIF1A.3_2541_10000_0.5121_0.3023_0.6854.png
                gene_name: HIF1A
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 62 percent done.
HIPK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.647702e-02	ci left: 2.493471e-01	ci right 2.665941e-01	k: 2579	n:10000
Cons ci ratio: 7.430771e-02	ci left: 2.095461e-01	ci right 2.258187e-01	k: 2176	n:10000
KS ci ratio: 4.939873e-02	ci left: 3.767412e-01	ci right 3.959251e-01	k: 3863	n:10000
HIPK4   10000 perm   2 sec   (5837 perm/sec)   p_kst 3.863000e-01   p_cons 2.176000e-01   p_joint 2.579000e-01

Outputting figure to mutsig2_images.part000000000078/HIPK4.3_1867_10000_0.3863_0.2176_0.2579.png
                gene_name: HIPK4
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 64 percent done.
HIRIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.169905e-02	ci left: 1.473694e-01	ci right 1.616325e-01	k: 1544	n:10000
Cons ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
KS ci ratio: 3.746868e-02	ci left: 5.126548e-01	ci right 5.323321e-01	k: 5225	n:10000
HIRIP3   10000 perm   2 sec   (5612 perm/sec)   p_kst 5.225000e-01   p_cons 5.170000e-02   p_joint 1.544000e-01

Joint ci ratio: 6.177228e-02	ci left: 1.623977e-01	ci right 1.727991e-01	k: 3351	n:20000
Cons ci ratio: 1.293542e-01	ci left: 4.105370e-02	ci right 4.677985e-02	k: 877	n:20000
KS ci ratio: 2.645908e-02	ci left: 5.162500e-01	ci right 5.301433e-01	k: 10464	n:20000
HIRIP3   20000 perm   4 sec   (4995 perm/sec)   p_kst 5.232000e-01   p_cons 4.385000e-02   p_joint 1.675500e-01

Joint ci ratio: 4.734013e-02	ci left: 1.816108e-01	ci right 1.904501e-01	k: 5580	n:30000
Cons ci ratio: 1.056181e-01	ci left: 4.157680e-02	ci right 4.624538e-02	k: 1316	n:30000
KS ci ratio: 2.172580e-02	ci left: 5.147284e-01	ci right 5.260677e-01	k: 15612	n:30000
HIRIP3   30000 perm   6 sec   (4789 perm/sec)   p_kst 5.204000e-01   p_cons 4.386667e-02   p_joint 1.860000e-01

Joint ci ratio: 4.227446e-02	ci left: 1.731716e-01	ci right 1.806754e-01	k: 7076	n:40000
Cons ci ratio: 9.018656e-02	ci left: 4.306243e-02	ci right 4.715394e-02	k: 1803	n:40000
KS ci ratio: 1.877954e-02	ci left: 5.164407e-01	ci right 5.262562e-01	k: 20854	n:40000
HIRIP3   40000 perm   9 sec   (4624 perm/sec)   p_kst 5.213500e-01   p_cons 4.507500e-02   p_joint 1.769000e-01

Outputting figure to mutsig2_images.part000000000078/HIRIP3.3_1699_40000_0.52135_0.045075_0.1769.png
                gene_name: HIRIP3
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 66 percent done.
HELT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.319010e-02	ci left: 4.418115e-01	ci right 4.614167e-01	k: 4516	n:10000
Cons ci ratio: 7.830018e-02	ci left: 1.924939e-01	ci right 2.082810e-01	k: 2003	n:10000
KS ci ratio: 9.166397e-02	ci left: 1.474675e-01	ci right 1.617343e-01	k: 1545	n:10000
HELT   10000 perm   2 sec   (6459 perm/sec)   p_kst 1.545000e-01   p_cons 2.003000e-01   p_joint 4.516000e-01

Outputting figure to mutsig2_images.part000000000078/HELT.2_1000_10000_0.1545_0.2003_0.4516.png
                gene_name: HELT
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 68 percent done.
HEPACAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.092556e-01	ci left: 3.034440e-02	ci right 3.753044e-02	k: 338	n:10000
Cons ci ratio: 4.113205e-01	ci left: 7.153353e-03	ci right 1.094096e-02	k: 89	n:10000
KS ci ratio: 4.597208e-02	ci left: 4.111978e-01	ci right 4.306483e-01	k: 4209	n:10000
HEPACAM   10000 perm   2 sec   (6122 perm/sec)   p_kst 4.209000e-01   p_cons 8.900000e-03   p_joint 3.380000e-02

Joint ci ratio: 1.831122e-01	ci left: 2.034603e-02	ci right 2.449443e-02	k: 447	n:20000
Cons ci ratio: 2.800644e-01	ci left: 8.341806e-03	ci right 1.110354e-02	k: 193	n:20000
KS ci ratio: 3.257691e-02	ci left: 4.130470e-01	ci right 4.267763e-01	k: 8398	n:20000
HEPACAM   20000 perm   4 sec   (5349 perm/sec)   p_kst 4.199000e-01   p_cons 9.650000e-03   p_joint 2.235000e-02

Joint ci ratio: 1.588280e-01	ci left: 1.831759e-02	ci right 2.150967e-02	k: 596	n:30000
Cons ci ratio: 2.259452e-01	ci left: 8.810667e-03	ci right 1.108575e-02	k: 297	n:30000
KS ci ratio: 2.657065e-02	ci left: 4.148388e-01	ci right 4.260433e-01	k: 12613	n:30000
HEPACAM   30000 perm   6 sec   (5058 perm/sec)   p_kst 4.204333e-01   p_cons 9.900000e-03   p_joint 1.986667e-02

Joint ci ratio: 1.347274e-01	ci left: 1.932710e-02	ci right 2.214308e-02	k: 828	n:40000
Cons ci ratio: 1.916555e-01	ci left: 9.357548e-03	ci right 1.136449e-02	k: 413	n:40000
KS ci ratio: 2.291977e-02	ci left: 4.175278e-01	ci right 4.272335e-01	k: 16895	n:40000
HEPACAM   40000 perm   8 sec   (4840 perm/sec)   p_kst 4.223750e-01   p_cons 1.032500e-02   p_joint 2.070000e-02

Joint ci ratio: 1.121771e-01	ci left: 2.250111e-02	ci right 2.519456e-02	k: 1191	n:50000
Cons ci ratio: 1.708395e-01	ci left: 9.529293e-03	ci right 1.132823e-02	k: 520	n:50000
KS ci ratio: 2.050508e-02	ci left: 4.179253e-01	ci right 4.266037e-01	k: 21113	n:50000
HEPACAM   50000 perm   11 sec   (4592 perm/sec)   p_kst 4.222600e-01   p_cons 1.040000e-02   p_joint 2.382000e-02

Joint ci ratio: 1.016201e-01	ci left: 2.296888e-02	ci right 2.544410e-02	k: 1451	n:60000
Cons ci ratio: 1.563596e-01	ci left: 9.555608e-03	ci right 1.119227e-02	k: 621	n:60000
KS ci ratio: 1.874715e-02	ci left: 4.175610e-01	ci right 4.254799e-01	k: 25291	n:60000
HEPACAM   60000 perm   13 sec   (4483 perm/sec)   p_kst 4.215167e-01   p_cons 1.035000e-02   p_joint 2.418333e-02

Joint ci ratio: 9.399680e-02	ci left: 2.310215e-02	ci right 2.539466e-02	k: 1696	n:70000
Cons ci ratio: 1.437305e-01	ci left: 9.758106e-03	ci right 1.128288e-02	k: 735	n:70000
KS ci ratio: 1.732567e-02	ci left: 4.187228e-01	ci right 4.260551e-01	k: 29567	n:70000
HEPACAM   70000 perm   16 sec   (4395 perm/sec)   p_kst 4.223857e-01   p_cons 1.050000e-02   p_joint 2.422857e-02

Joint ci ratio: 9.060548e-02	ci left: 2.182564e-02	ci right 2.390916e-02	k: 1828	n:80000
Cons ci ratio: 1.331062e-01	ci left: 1.001067e-02	ci right 1.145014e-02	k: 857	n:80000
KS ci ratio: 1.622205e-02	ci left: 4.184994e-01	ci right 4.253563e-01	k: 33754	n:80000
HEPACAM   80000 perm   19 sec   (4305 perm/sec)   p_kst 4.219250e-01   p_cons 1.071250e-02   p_joint 2.285000e-02

Joint ci ratio: 9.042092e-02	ci left: 1.952982e-02	ci right 2.139016e-02	k: 1840	n:90000
Cons ci ratio: 1.254446e-01	ci left: 1.005961e-02	ci right 1.141665e-02	k: 965	n:90000
KS ci ratio: 1.528571e-02	ci left: 4.189702e-01	ci right 4.254348e-01	k: 37998	n:90000
HEPACAM   90000 perm   21 sec   (4235 perm/sec)   p_kst 4.222000e-01   p_cons 1.072222e-02   p_joint 2.044444e-02

Joint ci ratio: 8.587854e-02	ci left: 1.953276e-02	ci right 2.129521e-02	k: 2040	n:100000
Cons ci ratio: 1.192508e-01	ci left: 1.005213e-02	ci right 1.133649e-02	k: 1068	n:100000
KS ci ratio: 1.447550e-02	ci left: 4.200052e-01	ci right 4.261393e-01	k: 42307	n:100000
HEPACAM   100000 perm   24 sec   (4171 perm/sec)   p_kst 4.230700e-01   p_cons 1.068000e-02   p_joint 2.040000e-02

Joint ci ratio: 8.177239e-02	ci left: 1.962617e-02	ci right 2.130833e-02	k: 2250	n:110000
Cons ci ratio: 1.131144e-01	ci left: 1.018873e-02	ci right 1.141908e-02	k: 1187	n:110000
KS ci ratio: 1.378305e-02	ci left: 4.208137e-01	ci right 4.266631e-01	k: 46611	n:110000
HEPACAM   110000 perm   27 sec   (4109 perm/sec)   p_kst 4.237364e-01   p_cons 1.079091e-02   p_joint 2.045455e-02

Joint ci ratio: 7.828522e-02	ci left: 1.966482e-02	ci right 2.127513e-02	k: 2455	n:120000
Cons ci ratio: 1.078789e-01	ci left: 1.029587e-02	ci right 1.147795e-02	k: 1305	n:120000
KS ci ratio: 1.321349e-02	ci left: 4.203024e-01	ci right 4.259013e-01	k: 50772	n:120000
HEPACAM   120000 perm   30 sec   (4046 perm/sec)   p_kst 4.231000e-01   p_cons 1.087500e-02   p_joint 2.045833e-02

Joint ci ratio: 7.515157e-02	ci left: 1.972902e-02	ci right 2.127709e-02	k: 2664	n:130000
Cons ci ratio: 1.039380e-01	ci left: 1.026021e-02	ci right 1.139254e-02	k: 1406	n:130000
KS ci ratio: 1.269153e-02	ci left: 4.205506e-01	ci right 4.259298e-01	k: 55021	n:130000
HEPACAM   130000 perm   33 sec   (3981 perm/sec)   p_kst 4.232385e-01   p_cons 1.081538e-02   p_joint 2.049231e-02

Joint ci ratio: 7.258590e-02	ci left: 1.966588e-02	ci right 2.115408e-02	k: 2856	n:140000
Cons ci ratio: 9.999822e-02	ci left: 1.031391e-02	ci right 1.140649e-02	k: 1519	n:140000
KS ci ratio: 1.221332e-02	ci left: 4.213094e-01	ci right 4.264937e-01	k: 59346	n:140000
HEPACAM   140000 perm   36 sec   (3918 perm/sec)   p_kst 4.239000e-01   p_cons 1.085000e-02   p_joint 2.040000e-02

Outputting figure to mutsig2_images.part000000000078/HEPACAM.2_1279_140000_0.4239_0.01085_0.0204.png
                gene_name: HEPACAM
               theta_stop: 0.100 
                    nperm: 140000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.010 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 70 percent done.
HERPUD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.766676e-02	ci left: 8.237123e-01	ci right 8.384943e-01	k: 8312	n:10000
Cons ci ratio: 4.826174e-02	ci left: 3.877898e-01	ci right 4.070700e-01	k: 3974	n:10000
KS ci ratio: 2.112175e-02	ci left: 7.666861e-01	ci right 7.831535e-01	k: 7750	n:10000
HERPUD2   10000 perm   2 sec   (5603 perm/sec)   p_kst 7.750000e-01   p_cons 3.974000e-01   p_joint 8.312000e-01

Outputting figure to mutsig2_images.part000000000078/HERPUD2.2_1253_10000_0.775_0.3974_0.8312.png
                gene_name: HERPUD2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 71 percent done.
HESX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.299056e-02	ci left: 8.950816e-01	ci right 9.068836e-01	k: 9011	n:10000
KS ci ratio: 3.182352e-02	ci left: 5.930304e-01	ci right 6.123098e-01	k: 6027	n:10000
HESX1   10000 perm   2 sec   (6476 perm/sec)   p_kst 6.027000e-01   p_cons 9.011000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HESX1.2_574_10000_0.6027_0.9011_1.png
                gene_name: HESX1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
HEXIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.612326e-02	ci left: 4.096033e-01	ci right 4.290437e-01	k: 4193	n:10000
Cons ci ratio: 3.054934e-02	ci left: 6.125124e-01	ci right 6.316164e-01	k: 6221	n:10000
KS ci ratio: 1.129456e-01	ci left: 1.013965e-01	ci right 1.136332e-01	k: 1074	n:10000
HEXIM2   10000 perm   2 sec   (6324 perm/sec)   p_kst 1.074000e-01   p_cons 6.221000e-01   p_joint 4.193000e-01

Joint ci ratio: 3.540230e-02	ci left: 3.732659e-01	ci right 3.867690e-01	k: 7600	n:20000
Cons ci ratio: 2.185614e-02	ci left: 6.098200e-01	ci right 6.233461e-01	k: 12332	n:20000
KS ci ratio: 8.116213e-02	ci left: 1.001949e-01	ci right 1.087205e-01	k: 2088	n:20000
HEXIM2   20000 perm   4 sec   (5513 perm/sec)   p_kst 1.044000e-01   p_cons 6.166000e-01   p_joint 3.800000e-01

Outputting figure to mutsig2_images.part000000000078/HEXIM2.2_869_20000_0.1044_0.6166_0.38.png
                gene_name: HEXIM2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 75 percent done.
HEYL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.607332e-02	ci left: 5.315730e-01	ci right 5.512029e-01	k: 5414	n:10000
KS ci ratio: 2.865516e-02	ci left: 6.422690e-01	ci right 6.610426e-01	k: 6517	n:10000
HEYL   10000 perm   2 sec   (5585 perm/sec)   p_kst 6.517000e-01   p_cons 5.414000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HEYL.2_1007_10000_0.6517_0.5414_1.png
                gene_name: HEYL
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
HGD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.602799e-02	ci left: 8.497808e-01	ci right 8.636107e-01	k: 8568	n:10000
KS ci ratio: 5.918727e-02	ci left: 2.957857e-01	ci right 3.139281e-01	k: 3048	n:10000
HGD   10000 perm   2 sec   (5901 perm/sec)   p_kst 3.048000e-01   p_cons 8.568000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HGD.2_1394_10000_0.3048_0.8568_1.png
                gene_name: HGD
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
HGFAC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.240467e-02	ci left: 5.842987e-01	ci right 6.036465e-01	k: 5940	n:10000
KS ci ratio: 3.014793e-02	ci left: 6.187420e-01	ci right 6.377832e-01	k: 6283	n:10000
HGFAC   10000 perm   2 sec   (5666 perm/sec)   p_kst 6.283000e-01   p_cons 5.940000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HGFAC.2_2024_10000_0.6283_0.594_1.png
                gene_name: HGFAC
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
HHATL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.502147e-02	ci left: 8.652935e-01	ci right 8.784890e-01	k: 8720	n:10000
Cons ci ratio: 4.766254e-02	ci left: 3.937641e-01	ci right 4.130922e-01	k: 4034	n:10000
KS ci ratio: 5.874346e-02	ci left: 2.989585e-01	ci right 3.171535e-01	k: 3080	n:10000
HHATL   10000 perm   2 sec   (5766 perm/sec)   p_kst 3.080000e-01   p_cons 4.034000e-01   p_joint 8.720000e-01

Outputting figure to mutsig2_images.part000000000078/HHATL.2_1559_10000_0.308_0.4034_0.872.png
                gene_name: HHATL
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 82 percent done.
HHEX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
Cons ci ratio: 5.159332e-02	ci left: 3.564494e-01	ci right 3.754288e-01	k: 3659	n:10000
KS ci ratio: 8.984102e-01	ci left: 1.067132e-03	ci right 2.843290e-03	k: 18	n:10000
HHEX   10000 perm   2 sec   (6363 perm/sec)   p_kst 1.800000e-03   p_cons 3.659000e-01   p_joint 1.450000e-02

Joint ci ratio: 2.547487e-01	ci left: 1.020918e-02	ci right 1.323527e-02	k: 233	n:20000
Cons ci ratio: 3.657636e-02	ci left: 3.580739e-01	ci right 3.714655e-01	k: 7295	n:20000
KS ci ratio: 5.651098e-01	ci left: 1.727187e-03	ci right 3.123791e-03	k: 47	n:20000
HHEX   20000 perm   4 sec   (5513 perm/sec)   p_kst 2.350000e-03   p_cons 3.647500e-01   p_joint 1.165000e-02

Joint ci ratio: 2.286735e-01	ci left: 8.590510e-03	ci right 1.083930e-02	k: 290	n:30000
Cons ci ratio: 2.974453e-02	ci left: 3.611769e-01	ci right 3.721156e-01	k: 10999	n:30000
KS ci ratio: 4.582351e-01	ci left: 1.878312e-03	ci right 3.021462e-03	k: 72	n:30000
HHEX   30000 perm   6 sec   (5290 perm/sec)   p_kst 2.400000e-03   p_cons 3.666333e-01   p_joint 9.666667e-03

Joint ci ratio: 2.148943e-01	ci left: 7.363245e-03	ci right 9.159242e-03	k: 329	n:40000
Cons ci ratio: 2.577568e-02	ci left: 3.616257e-01	ci right 3.710937e-01	k: 14654	n:40000
KS ci ratio: 4.174083e-01	ci left: 1.742441e-03	ci right 2.682173e-03	k: 87	n:40000
HHEX   40000 perm   8 sec   (5123 perm/sec)   p_kst 2.175000e-03   p_cons 3.663500e-01   p_joint 8.225000e-03

Joint ci ratio: 1.775008e-01	ci left: 8.802120e-03	ci right 1.053552e-02	k: 482	n:50000
Cons ci ratio: 2.300167e-02	ci left: 3.631921e-01	ci right 3.716633e-01	k: 18371	n:50000
KS ci ratio: 3.651176e-01	ci left: 1.881076e-03	ci right 2.738348e-03	k: 114	n:50000
HHEX   50000 perm   10 sec   (4957 perm/sec)   p_kst 2.280000e-03   p_cons 3.674200e-01   p_joint 9.640000e-03

Joint ci ratio: 1.733548e-01	ci left: 7.717154e-03	ci right 9.197648e-03	k: 506	n:60000
Cons ci ratio: 2.102046e-02	ci left: 3.630584e-01	ci right 3.707878e-01	k: 22015	n:60000
KS ci ratio: 3.274133e-01	ci left: 1.993779e-03	ci right 2.788911e-03	k: 142	n:60000
HHEX   60000 perm   12 sec   (4820 perm/sec)   p_kst 2.366667e-03   p_cons 3.669167e-01   p_joint 8.433333e-03

Joint ci ratio: 1.531574e-01	ci left: 8.560956e-03	ci right 9.994450e-03	k: 648	n:70000
Cons ci ratio: 1.945717e-02	ci left: 3.634421e-01	ci right 3.705975e-01	k: 25691	n:70000
KS ci ratio: 3.020693e-01	ci left: 2.037936e-03	ci right 2.775708e-03	k: 167	n:70000
HHEX   70000 perm   15 sec   (4712 perm/sec)   p_kst 2.385714e-03   p_cons 3.670143e-01   p_joint 9.257143e-03

Joint ci ratio: 1.546955e-01	ci left: 7.346252e-03	ci right 8.589828e-03	k: 636	n:80000
Cons ci ratio: 1.822320e-02	ci left: 3.630973e-01	ci right 3.697874e-01	k: 29315	n:80000
KS ci ratio: 2.775339e-01	ci left: 2.142592e-03	ci right 2.844265e-03	k: 198	n:80000
HHEX   80000 perm   17 sec   (4612 perm/sec)   p_kst 2.475000e-03   p_cons 3.664375e-01   p_joint 7.950000e-03

Joint ci ratio: 1.780714e-01	ci left: 4.878552e-03	ci right 5.842641e-03	k: 481	n:90000
Cons ci ratio: 1.717421e-02	ci left: 3.634728e-01	ci right 3.697803e-01	k: 32996	n:90000
KS ci ratio: 2.645651e-01	ci left: 2.111650e-03	ci right 2.765525e-03	k: 218	n:90000
HHEX   90000 perm   20 sec   (4512 perm/sec)   p_kst 2.422222e-03   p_cons 3.666222e-01   p_joint 5.344444e-03

Joint ci ratio: 2.097671e-01	ci left: 3.115000e-03	ci right 3.854261e-03	k: 347	n:100000
Cons ci ratio: 1.628213e-02	ci left: 3.639417e-01	ci right 3.699260e-01	k: 36693	n:100000
KS ci ratio: 2.466242e-01	ci left: 2.209382e-03	ci right 2.840026e-03	k: 251	n:100000
HHEX   100000 perm   23 sec   (4410 perm/sec)   p_kst 2.510000e-03   p_cons 3.669300e-01   p_joint 3.470000e-03

Joint ci ratio: 2.015431e-01	ci left: 3.081876e-03	ci right 3.781073e-03	k: 376	n:110000
Cons ci ratio: 1.553699e-02	ci left: 3.637060e-01	ci right 3.694102e-01	k: 40321	n:110000
KS ci ratio: 2.343854e-01	ci left: 2.239205e-03	ci right 2.842047e-03	k: 278	n:110000
HHEX   110000 perm   26 sec   (4306 perm/sec)   p_kst 2.527273e-03   p_cons 3.665545e-01   p_joint 3.418182e-03

Joint ci ratio: 1.954273e-01	ci left: 3.015104e-03	ci right 3.675924e-03	k: 400	n:120000
Cons ci ratio: 1.488104e-02	ci left: 3.636563e-01	ci right 3.691168e-01	k: 43966	n:120000
KS ci ratio: 2.241722e-01	ci left: 2.256834e-03	ci right 2.834293e-03	k: 304	n:120000
HHEX   120000 perm   28 sec   (4221 perm/sec)   p_kst 2.533333e-03   p_cons 3.663833e-01   p_joint 3.333333e-03

Joint ci ratio: 3.116677e-01	ci left: 1.026260e-03	ci right 1.411928e-03	k: 157	n:130000
Cons ci ratio: 1.488232e-02	ci left: 3.453795e-01	ci right 3.505657e-01	k: 45236	n:130000
KS ci ratio: 2.145386e-01	ci left: 2.286790e-03	ci right 2.843461e-03	k: 332	n:130000
HHEX   130000 perm   32 sec   (4116 perm/sec)   p_kst 2.553846e-03   p_cons 3.479692e-01   p_joint 1.207692e-03

Joint ci ratio: 3.004666e-01	ci left: 1.032090e-03	ci right 1.403351e-03	k: 169	n:140000
Cons ci ratio: 1.433392e-02	ci left: 3.456970e-01	ci right 3.506950e-01	k: 48747	n:140000
KS ci ratio: 2.054790e-01	ci left: 2.326473e-03	ci right 2.865885e-03	k: 362	n:140000
HHEX   140000 perm   35 sec   (4049 perm/sec)   p_kst 2.585714e-03   p_cons 3.481929e-01   p_joint 1.207143e-03

Joint ci ratio: 3.323349e-01	ci left: 7.729670e-04	ci right 1.086841e-03	k: 138	n:150000
Cons ci ratio: 1.384931e-02	ci left: 3.457355e-01	ci right 3.505637e-01	k: 52222	n:150000
KS ci ratio: 2.003084e-01	ci left: 2.291603e-03	ci right 2.807925e-03	k: 381	n:150000
HHEX   150000 perm   38 sec   (3980 perm/sec)   p_kst 2.540000e-03   p_cons 3.481467e-01   p_joint 9.200000e-04

Joint ci ratio: 3.253897e-01	ci left: 7.590600e-04	ci right 1.059500e-03	k: 144	n:160000
Cons ci ratio: 1.341425e-02	ci left: 3.456532e-01	ci right 3.503273e-01	k: 55678	n:160000
KS ci ratio: 1.950224e-01	ci left: 2.273130e-03	ci right 2.770170e-03	k: 402	n:160000
HHEX   160000 perm   41 sec   (3906 perm/sec)   p_kst 2.512500e-03   p_cons 3.479875e-01   p_joint 9.000000e-04

Joint ci ratio: 3.147175e-01	ci left: 7.685096e-04	ci right 1.060708e-03	k: 154	n:170000
Cons ci ratio: 1.299115e-02	ci left: 3.465106e-01	ci right 3.510475e-01	k: 59292	n:170000
KS ci ratio: 1.890199e-01	ci left: 2.285008e-03	ci right 2.767501e-03	k: 428	n:170000
HHEX   170000 perm   44 sec   (3848 perm/sec)   p_kst 2.517647e-03   p_cons 3.487765e-01   p_joint 9.058824e-04

Joint ci ratio: 3.031971e-01	ci left: 7.873160e-04	ci right 1.073595e-03	k: 166	n:180000
Cons ci ratio: 1.262989e-02	ci left: 3.464038e-01	ci right 3.508122e-01	k: 62749	n:180000
KS ci ratio: 1.833376e-01	ci left: 2.301075e-03	ci right 2.770731e-03	k: 455	n:180000
HHEX   180000 perm   47 sec   (3794 perm/sec)   p_kst 2.527778e-03   p_cons 3.486056e-01   p_joint 9.222222e-04

Joint ci ratio: 2.945072e-01	ci left: 7.945653e-04	ci right 1.073655e-03	k: 176	n:190000
Cons ci ratio: 1.229504e-02	ci left: 3.463887e-01	ci right 3.506791e-01	k: 66221	n:190000
KS ci ratio: 1.786961e-01	ci left: 2.300558e-03	ci right 2.756936e-03	k: 479	n:190000
HHEX   190000 perm   51 sec   (3740 perm/sec)   p_kst 2.521053e-03   p_cons 3.485316e-01   p_joint 9.263158e-04

Joint ci ratio: 2.872939e-01	ci left: 7.965543e-04	ci right 1.068246e-03	k: 185	n:200000
Cons ci ratio: 1.199605e-02	ci left: 3.459770e-01	ci right 3.501574e-01	k: 69613	n:200000
KS ci ratio: 1.745638e-01	ci left: 2.295446e-03	ci right 2.739169e-03	k: 502	n:200000
HHEX   200000 perm   54 sec   (3683 perm/sec)   p_kst 2.510000e-03   p_cons 3.480650e-01   p_joint 9.250000e-04

Joint ci ratio: 2.791567e-01	ci left: 8.072851e-04	ci right 1.073467e-03	k: 196	n:210000
Cons ci ratio: 1.170716e-02	ci left: 3.460195e-01	ci right 3.500990e-01	k: 73092	n:210000
KS ci ratio: 1.711956e-01	ci left: 2.277254e-03	ci right 2.708090e-03	k: 522	n:210000
HHEX   210000 perm   58 sec   (3627 perm/sec)   p_kst 2.485714e-03   p_cons 3.480571e-01   p_joint 9.333333e-04

Joint ci ratio: 2.716740e-01	ci left: 8.171387e-04	ci right 1.078117e-03	k: 207	n:220000
Cons ci ratio: 1.143062e-02	ci left: 3.463588e-01	ci right 3.503452e-01	k: 76637	n:220000
KS ci ratio: 1.673982e-01	ci left: 2.278212e-03	ci right 2.698704e-03	k: 546	n:220000
HHEX   220000 perm   62 sec   (3568 perm/sec)   p_kst 2.481818e-03   p_cons 3.483500e-01   p_joint 9.409091e-04

Joint ci ratio: 2.246783e-01	ci left: 1.173299e-03	ci right 1.474276e-03	k: 303	n:230000
Cons ci ratio: 1.118210e-02	ci left: 3.462919e-01	ci right 3.501902e-01	k: 80095	n:230000
KS ci ratio: 1.635559e-01	ci left: 2.287522e-03	ci right 2.699088e-03	k: 572	n:230000
HHEX   230000 perm   66 sec   (3510 perm/sec)   p_kst 2.486957e-03   p_cons 3.482391e-01   p_joint 1.317391e-03

Joint ci ratio: 2.221383e-01	ci left: 1.151945e-03	ci right 1.443647e-03	k: 310	n:240000
Cons ci ratio: 1.094319e-02	ci left: 3.464769e-01	ci right 3.502934e-01	k: 83612	n:240000
KS ci ratio: 1.615974e-01	ci left: 2.248165e-03	ci right 2.647336e-03	k: 586	n:240000
HHEX   240000 perm   69 sec   (3457 perm/sec)   p_kst 2.441667e-03   p_cons 3.483833e-01   p_joint 1.291667e-03

Joint ci ratio: 2.176362e-01	ci left: 1.155003e-03	ci right 1.440760e-03	k: 323	n:250000
Cons ci ratio: 1.071566e-02	ci left: 3.467877e-01	ci right 3.505278e-01	k: 87164	n:250000
KS ci ratio: 1.585221e-01	ci left: 2.246553e-03	ci right 2.637125e-03	k: 609	n:250000
HHEX   250000 perm   74 sec   (3401 perm/sec)   p_kst 2.436000e-03   p_cons 3.486560e-01   p_joint 1.292000e-03

Joint ci ratio: 2.143546e-01	ci left: 1.146961e-03	ci right 1.425886e-03	k: 333	n:260000
Cons ci ratio: 1.050478e-02	ci left: 3.469448e-01	ci right 3.506124e-01	k: 90682	n:260000
KS ci ratio: 1.556159e-01	ci left: 2.245132e-03	ci right 2.627633e-03	k: 632	n:260000
HHEX   260000 perm   78 sec   (3353 perm/sec)   p_kst 2.430769e-03   p_cons 3.487769e-01   p_joint 1.280769e-03

Joint ci ratio: 2.112172e-01	ci left: 1.139544e-03	ci right 1.412084e-03	k: 343	n:270000
Cons ci ratio: 1.031705e-02	ci left: 3.465989e-01	ci right 3.501970e-01	k: 94067	n:270000
KS ci ratio: 1.534513e-01	ci left: 2.226066e-03	ci right 2.599558e-03	k: 650	n:270000
HHEX   270000 perm   82 sec   (3304 perm/sec)   p_kst 2.407407e-03   p_cons 3.483963e-01   p_joint 1.270370e-03

Joint ci ratio: 2.064689e-01	ci left: 1.153001e-03	ci right 1.421778e-03	k: 359	n:280000
Cons ci ratio: 1.013019e-02	ci left: 3.466742e-01	ci right 3.502075e-01	k: 97563	n:280000
KS ci ratio: 1.495919e-01	ci left: 2.263392e-03	ci right 2.632741e-03	k: 684	n:280000
HHEX   280000 perm   86 sec   (3259 perm/sec)   p_kst 2.442857e-03   p_cons 3.484393e-01   p_joint 1.282143e-03

Joint ci ratio: 2.033857e-01	ci left: 1.149227e-03	ci right 1.412626e-03	k: 370	n:290000
Cons ci ratio: 9.956829e-03	ci left: 3.465761e-01	ci right 3.500476e-01	k: 101010	n:290000
KS ci ratio: 1.475609e-01	ci left: 2.248424e-03	ci right 2.609910e-03	k: 703	n:290000
HHEX   290000 perm   90 sec   (3211 perm/sec)   p_kst 2.424138e-03   p_cons 3.483103e-01   p_joint 1.275862e-03

Joint ci ratio: 1.991359e-01	ci left: 1.161566e-03	ci right 1.421555e-03	k: 386	n:300000
Cons ci ratio: 9.782732e-03	ci left: 3.469179e-01	ci right 3.503317e-01	k: 104587	n:300000
KS ci ratio: 1.450084e-01	ci left: 2.253760e-03	ci right 2.609294e-03	k: 728	n:300000
HHEX   300000 perm   95 sec   (3170 perm/sec)   p_kst 2.426667e-03   p_cons 3.486233e-01   p_joint 1.286667e-03

Joint ci ratio: 1.859014e-01	ci left: 1.299123e-03	ci right 1.568400e-03	k: 443	n:310000
Cons ci ratio: 9.625517e-03	ci left: 3.468579e-01	ci right 3.502159e-01	k: 108046	n:310000
KS ci ratio: 1.413676e-01	ci left: 2.299252e-03	ci right 2.652087e-03	k: 766	n:310000
HHEX   310000 perm   99 sec   (3127 perm/sec)   p_kst 2.470968e-03   p_cons 3.485355e-01   p_joint 1.429032e-03

Joint ci ratio: 1.832386e-01	ci left: 1.297274e-03	ci right 1.561887e-03	k: 456	n:320000
Cons ci ratio: 9.471603e-03	ci left: 3.469956e-01	ci right 3.503009e-01	k: 111567	n:320000
KS ci ratio: 1.393833e-01	ci left: 2.293735e-03	ci right 2.640373e-03	k: 788	n:320000
HHEX   320000 perm   104 sec   (3088 perm/sec)   p_kst 2.462500e-03   p_cons 3.486469e-01   p_joint 1.425000e-03

Joint ci ratio: 1.814620e-01	ci left: 1.283989e-03	ci right 1.543075e-03	k: 465	n:330000
Cons ci ratio: 9.331815e-03	ci left: 3.467863e-01	ci right 3.500406e-01	k: 114976	n:330000
KS ci ratio: 1.374804e-01	ci left: 2.288585e-03	ci right 2.629336e-03	k: 810	n:330000
HHEX   330000 perm   108 sec   (3051 perm/sec)   p_kst 2.454545e-03   p_cons 3.484121e-01   p_joint 1.409091e-03

Joint ci ratio: 1.803071e-01	ci left: 1.263072e-03	ci right 1.516137e-03	k: 471	n:340000
Cons ci ratio: 9.193924e-03	ci left: 3.467924e-01	ci right 3.499984e-01	k: 118454	n:340000
KS ci ratio: 1.363939e-01	ci left: 2.258197e-03	ci right 2.591550e-03	k: 823	n:340000
HHEX   340000 perm   113 sec   (3005 perm/sec)   p_kst 2.420588e-03   p_cons 3.483941e-01   p_joint 1.385294e-03

Joint ci ratio: 1.780583e-01	ci left: 1.259732e-03	ci right 1.508641e-03	k: 483	n:350000
Cons ci ratio: 9.064709e-03	ci left: 3.466615e-01	ci right 3.498210e-01	k: 121884	n:350000
KS ci ratio: 1.348491e-01	ci left: 2.246120e-03	ci right 2.573634e-03	k: 842	n:350000
HHEX   350000 perm   118 sec   (2959 perm/sec)   p_kst 2.405714e-03   p_cons 3.482400e-01   p_joint 1.380000e-03

Joint ci ratio: 1.744882e-01	ci left: 1.277845e-03	ci right 1.524737e-03	k: 503	n:360000
Cons ci ratio: 8.937346e-03	ci left: 3.467130e-01	ci right 3.498283e-01	k: 125377	n:360000
KS ci ratio: 1.319814e-01	ci left: 2.283078e-03	ci right 2.608347e-03	k: 879	n:360000
HHEX   360000 perm   123 sec   (2920 perm/sec)   p_kst 2.441667e-03   p_cons 3.482694e-01   p_joint 1.397222e-03

Joint ci ratio: 1.706360e-01	ci left: 1.302787e-03	ci right 1.548370e-03	k: 526	n:370000
Cons ci ratio: 8.814522e-03	ci left: 3.467971e-01	ci right 3.498701e-01	k: 128883	n:370000
KS ci ratio: 1.291480e-01	ci left: 2.323339e-03	ci right 2.646693e-03	k: 918	n:370000
HHEX   370000 perm   129 sec   (2879 perm/sec)   p_kst 2.481081e-03   p_cons 3.483324e-01   p_joint 1.421622e-03

Joint ci ratio: 1.684137e-01	ci left: 1.303783e-03	ci right 1.546028e-03	k: 540	n:380000
Cons ci ratio: 8.698895e-03	ci left: 3.467588e-01	ci right 3.497909e-01	k: 132344	n:380000
KS ci ratio: 1.274264e-01	ci left: 2.325877e-03	ci right 2.644943e-03	k: 943	n:380000
HHEX   380000 perm   134 sec   (2838 perm/sec)   p_kst 2.481579e-03   p_cons 3.482737e-01   p_joint 1.421053e-03

Joint ci ratio: 1.662761e-01	ci left: 1.304746e-03	ci right 1.543785e-03	k: 554	n:390000
Cons ci ratio: 8.589109e-03	ci left: 3.466483e-01	ci right 3.496411e-01	k: 135776	n:390000
KS ci ratio: 1.257718e-01	ci left: 2.328312e-03	ci right 2.643255e-03	k: 968	n:390000
HHEX   390000 perm   140 sec   (2796 perm/sec)   p_kst 2.482051e-03   p_cons 3.481436e-01   p_joint 1.420513e-03

Joint ci ratio: 1.643625e-01	ci left: 1.303283e-03	ci right 1.539034e-03	k: 567	n:400000
Cons ci ratio: 8.479546e-03	ci left: 3.467485e-01	ci right 3.497037e-01	k: 139290	n:400000
KS ci ratio: 1.242428e-01	ci left: 2.328228e-03	ci right 2.639049e-03	k: 992	n:400000
HHEX   400000 perm   145 sec   (2759 perm/sec)   p_kst 2.480000e-03   p_cons 3.482250e-01   p_joint 1.417500e-03

Joint ci ratio: 1.989134e-01	ci left: 8.522300e-04	ci right 1.042741e-03	k: 387	n:410000
Cons ci ratio: 8.372721e-03	ci left: 3.469171e-01	ci right 3.498363e-01	k: 142834	n:410000
KS ci ratio: 1.228287e-01	ci left: 2.325805e-03	ci right 2.632513e-03	k: 1015	n:410000
HHEX   410000 perm   150 sec   (2725 perm/sec)   p_kst 2.475610e-03   p_cons 3.483756e-01   p_joint 9.439024e-04

Joint ci ratio: 1.961520e-01	ci left: 8.568342e-04	ci right 1.045398e-03	k: 398	n:420000
Cons ci ratio: 8.273781e-03	ci left: 3.468614e-01	ci right 3.497455e-01	k: 146287	n:420000
KS ci ratio: 1.209379e-01	ci left: 2.344298e-03	ci right 2.648345e-03	k: 1047	n:420000
HHEX   420000 perm   156 sec   (2698 perm/sec)   p_kst 2.492857e-03   p_cons 3.483024e-01   p_joint 9.476190e-04

Joint ci ratio: 1.923321e-01	ci left: 8.723084e-04	ci right 1.060102e-03	k: 414	n:430000
Cons ci ratio: 8.175670e-03	ci left: 3.469525e-01	ci right 3.498030e-01	k: 149802	n:430000
KS ci ratio: 1.188014e-01	ci left: 2.375504e-03	ci right 2.677773e-03	k: 1085	n:430000
HHEX   430000 perm   161 sec   (2668 perm/sec)   p_kst 2.523256e-03   p_cons 3.483767e-01   p_joint 9.627907e-04

Joint ci ratio: 1.900559e-01	ci left: 8.741227e-04	ci right 1.059823e-03	k: 424	n:440000
Cons ci ratio: 8.080321e-03	ci left: 3.470760e-01	ci right 3.498941e-01	k: 153333	n:440000
KS ci ratio: 1.175102e-01	ci left: 2.374449e-03	ci right 2.673072e-03	k: 1109	n:440000
HHEX   440000 perm   167 sec   (2637 perm/sec)   p_kst 2.520455e-03   p_cons 3.484841e-01   p_joint 9.636364e-04

Joint ci ratio: 1.876428e-01	ci left: 8.779868e-04	ci right 1.061869e-03	k: 435	n:450000
Cons ci ratio: 7.987411e-03	ci left: 3.472409e-01	ci right 3.500277e-01	k: 156885	n:450000
KS ci ratio: 1.162602e-01	ci left: 2.373457e-03	ci right 2.668562e-03	k: 1133	n:450000
HHEX   450000 perm   173 sec   (2605 perm/sec)   p_kst 2.517778e-03   p_cons 3.486333e-01   p_joint 9.666667e-04

Joint ci ratio: 1.855272e-01	ci left: 8.796239e-04	ci right 1.061539e-03	k: 445	n:460000
Cons ci ratio: 7.899334e-03	ci left: 3.473010e-01	ci right 3.500574e-01	k: 160392	n:460000
KS ci ratio: 1.150493e-01	ci left: 2.372525e-03	ci right 2.664232e-03	k: 1157	n:460000
HHEX   460000 perm   179 sec   (2574 perm/sec)   p_kst 2.515217e-03   p_cons 3.486783e-01   p_joint 9.673913e-04

Joint ci ratio: 1.832805e-01	ci left: 8.832326e-04	ci right 1.063436e-03	k: 456	n:470000
Cons ci ratio: 7.819417e-03	ci left: 3.470505e-01	ci right 3.497769e-01	k: 163754	n:470000
KS ci ratio: 1.138272e-01	ci left: 2.373714e-03	ci right 2.662260e-03	k: 1182	n:470000
HHEX   470000 perm   184 sec   (2548 perm/sec)   p_kst 2.514894e-03   p_cons 3.484128e-01   p_joint 9.702128e-04

Joint ci ratio: 1.809201e-01	ci left: 8.886926e-04	ci right 1.067419e-03	k: 468	n:480000
Cons ci ratio: 7.736441e-03	ci left: 3.471290e-01	ci right 3.498270e-01	k: 167269	n:480000
KS ci ratio: 1.125032e-01	ci left: 2.380945e-03	ci right 2.666780e-03	k: 1210	n:480000
HHEX   480000 perm   190 sec   (2522 perm/sec)   p_kst 2.520833e-03   p_cons 3.484771e-01   p_joint 9.750000e-04

Joint ci ratio: 1.801546e-01	ci left: 8.783499e-04	ci right 1.054167e-03	k: 472	n:490000
Cons ci ratio: 7.655363e-03	ci left: 3.472452e-01	ci right 3.499157e-01	k: 170804	n:490000
KS ci ratio: 1.119515e-01	ci left: 2.356155e-03	ci right 2.637534e-03	k: 1222	n:490000
HHEX   490000 perm   196 sec   (2496 perm/sec)   p_kst 2.493878e-03   p_cons 3.485796e-01   p_joint 9.632653e-04

Joint ci ratio: 1.786504e-01	ci left: 8.760643e-04	ci right 1.049802e-03	k: 480	n:500000
Cons ci ratio: 7.576148e-03	ci left: 3.473949e-01	ci right 3.500388e-01	k: 174358	n:500000
KS ci ratio: 1.108690e-01	ci left: 2.355694e-03	ci right 2.634121e-03	k: 1246	n:500000
HHEX   500000 perm   202 sec   (2472 perm/sec)   p_kst 2.492000e-03   p_cons 3.487160e-01   p_joint 9.600000e-04

Joint ci ratio: 1.773650e-01	ci left: 8.720003e-04	ci right 1.043554e-03	k: 487	n:510000
Cons ci ratio: 7.505495e-03	ci left: 3.471667e-01	ci right 3.497841e-01	k: 177722	n:510000
KS ci ratio: 1.101218e-01	ci left: 2.341915e-03	ci right 2.616727e-03	k: 1263	n:510000
HHEX   510000 perm   208 sec   (2449 perm/sec)   p_kst 2.476471e-03   p_cons 3.484745e-01   p_joint 9.549020e-04

Joint ci ratio: 1.748735e-01	ci left: 8.809678e-04	ci right 1.051594e-03	k: 501	n:520000
Cons ci ratio: 7.433095e-03	ci left: 3.471721e-01	ci right 3.497642e-01	k: 181203	n:520000
KS ci ratio: 1.090911e-01	ci left: 2.341767e-03	ci right 2.613824e-03	k: 1287	n:520000
HHEX   520000 perm   214 sec   (2424 perm/sec)   p_kst 2.475000e-03   p_cons 3.484673e-01   p_joint 9.634615e-04

Joint ci ratio: 1.741819e-01	ci left: 8.715628e-04	ci right 1.039630e-03	k: 505	n:530000
Cons ci ratio: 7.362200e-03	ci left: 3.472114e-01	ci right 3.497789e-01	k: 184702	n:530000
KS ci ratio: 1.083790e-01	ci left: 2.328785e-03	ci right 2.597455e-03	k: 1304	n:530000
HHEX   530000 perm   221 sec   (2401 perm/sec)   p_kst 2.460377e-03   p_cons 3.484943e-01   p_joint 9.528302e-04

Joint ci ratio: 1.723187e-01	ci left: 8.749100e-04	ci right 1.041630e-03	k: 516	n:540000
Cons ci ratio: 7.293741e-03	ci left: 3.472216e-01	ci right 3.497652e-01	k: 188186	n:540000
KS ci ratio: 1.073555e-01	ci left: 2.330706e-03	ci right 2.596899e-03	k: 1329	n:540000
HHEX   540000 perm   227 sec   (2377 perm/sec)   p_kst 2.461111e-03   p_cons 3.484926e-01   p_joint 9.555556e-04

Joint ci ratio: 1.713280e-01	ci left: 8.694423e-04	ci right 1.034069e-03	k: 522	n:550000
Cons ci ratio: 7.225422e-03	ci left: 3.473405e-01	ci right 3.498611e-01	k: 191730	n:550000
KS ci ratio: 1.064787e-01	ci left: 2.327260e-03	ci right 2.590752e-03	k: 1351	n:550000
HHEX   550000 perm   234 sec   (2349 perm/sec)   p_kst 2.456364e-03   p_cons 3.486000e-01   p_joint 9.490909e-04

Joint ci ratio: 1.700327e-01	ci left: 8.675919e-04	ci right 1.030499e-03	k: 530	n:560000
Cons ci ratio: 7.160563e-03	ci left: 3.473554e-01	ci right 3.498533e-01	k: 195218	n:560000
KS ci ratio: 1.056231e-01	ci left: 2.323945e-03	ci right 2.584816e-03	k: 1373	n:560000
HHEX   560000 perm   241 sec   (2326 perm/sec)   p_kst 2.451786e-03   p_cons 3.486036e-01   p_joint 9.464286e-04

Joint ci ratio: 1.682982e-01	ci left: 8.708523e-04	ci right 1.032535e-03	k: 541	n:570000
Cons ci ratio: 7.099174e-03	ci left: 3.472576e-01	ci right 3.497334e-01	k: 198642	n:570000
KS ci ratio: 1.045254e-01	ci left: 2.332715e-03	ci right 2.591682e-03	k: 1402	n:570000
HHEX   570000 perm   247 sec   (2304 perm/sec)   p_kst 2.459649e-03   p_cons 3.484947e-01   p_joint 9.491228e-04

Joint ci ratio: 1.672222e-01	ci left: 8.673997e-04	ci right 1.027308e-03	k: 548	n:580000
Cons ci ratio: 7.038001e-03	ci left: 3.472495e-01	ci right 3.497037e-01	k: 202116	n:580000
KS ci ratio: 1.036427e-01	ci left: 2.332798e-03	ci right 2.589454e-03	k: 1426	n:580000
HHEX   580000 perm   255 sec   (2279 perm/sec)   p_kst 2.458621e-03   p_cons 3.484759e-01   p_joint 9.448276e-04

Joint ci ratio: 1.655715e-01	ci left: 8.705658e-04	ci right 1.029315e-03	k: 559	n:590000
Cons ci ratio: 6.977862e-03	ci left: 3.472756e-01	ci right 3.497090e-01	k: 205610	n:590000
KS ci ratio: 1.026403e-01	ci left: 2.339493e-03	ci right 2.594245e-03	k: 1454	n:590000
HHEX   590000 perm   262 sec   (2255 perm/sec)   p_kst 2.464407e-03   p_cons 3.484915e-01   p_joint 9.474576e-04

Joint ci ratio: 1.633968e-01	ci left: 8.800277e-04	ci right 1.038188e-03	k: 574	n:600000
Cons ci ratio: 6.917665e-03	ci left: 3.474041e-01	ci right 3.498173e-01	k: 209166	n:600000
KS ci ratio: 1.015978e-01	ci left: 2.349225e-03	ci right 2.602284e-03	k: 1484	n:600000
HHEX   600000 perm   269 sec   (2232 perm/sec)   p_kst 2.473333e-03   p_cons 3.486100e-01   p_joint 9.566667e-04

Joint ci ratio: 1.617177e-01	ci left: 8.844730e-04	ci right 1.041640e-03	k: 586	n:610000
Cons ci ratio: 6.859493e-03	ci left: 3.474958e-01	ci right 3.498892e-01	k: 212702	n:610000
KS ci ratio: 1.007867e-01	ci left: 2.349061e-03	ci right 2.599963e-03	k: 1508	n:610000
HHEX   610000 perm   276 sec   (2209 perm/sec)   p_kst 2.472131e-03   p_cons 3.486918e-01   p_joint 9.606557e-04

Joint ci ratio: 1.603575e-01	ci left: 8.856864e-04	ci right 1.041618e-03	k: 596	n:620000
Cons ci ratio: 6.802595e-03	ci left: 3.475959e-01	ci right 3.499701e-01	k: 216245	n:620000
KS ci ratio: 1.000602e-01	ci left: 2.345766e-03	ci right 2.594403e-03	k: 1530	n:620000
HHEX   620000 perm   283 sec   (2188 perm/sec)   p_kst 2.467742e-03   p_cons 3.487823e-01   p_joint 9.612903e-04

Joint ci ratio: 1.589001e-01	ci left: 8.883909e-04	ci right 1.043241e-03	k: 607	n:630000
Cons ci ratio: 6.748316e-03	ci left: 3.476104e-01	ci right 3.499656e-01	k: 219736	n:630000
KS ci ratio: 9.918919e-02	ci left: 2.350321e-03	ci right 2.597147e-03	k: 1557	n:630000
HHEX   630000 perm   291 sec   (2168 perm/sec)   p_kst 2.471429e-03   p_cons 3.487873e-01   p_joint 9.634921e-04

Joint ci ratio: 1.579936e-01	ci left: 8.850135e-04	ci right 1.038312e-03	k: 614	n:640000
Cons ci ratio: 6.696144e-03	ci left: 3.475683e-01	ci right 3.499050e-01	k: 223191	n:640000
KS ci ratio: 9.843398e-02	ci left: 2.350170e-03	ci right 2.594993e-03	k: 1581	n:640000
HHEX   640000 perm   298 sec   (2148 perm/sec)   p_kst 2.470312e-03   p_cons 3.487359e-01   p_joint 9.593750e-04

Joint ci ratio: 1.567245e-01	ci left: 8.861767e-04	ci right 1.038327e-03	k: 624	n:650000
Cons ci ratio: 6.645390e-03	ci left: 3.475122e-01	ci right 3.498307e-01	k: 226636	n:650000
KS ci ratio: 9.775681e-02	ci left: 2.347030e-03	ci right 2.589746e-03	k: 1603	n:650000
HHEX   650000 perm   305 sec   (2129 perm/sec)   p_kst 2.466154e-03   p_cons 3.486708e-01   p_joint 9.600000e-04

Joint ci ratio: 1.556082e-01	ci left: 8.858533e-04	ci right 1.036764e-03	k: 633	n:660000
Cons ci ratio: 6.594870e-03	ci left: 3.475199e-01	ci right 3.498208e-01	k: 230122	n:660000
KS ci ratio: 9.700376e-02	ci left: 2.348425e-03	ci right 2.589309e-03	k: 1628	n:660000
HHEX   660000 perm   313 sec   (2110 perm/sec)   p_kst 2.466667e-03   p_cons 3.486697e-01   p_joint 9.590909e-04

Joint ci ratio: 1.549987e-01	ci left: 8.798040e-04	ci right 1.029043e-03	k: 638	n:670000
Cons ci ratio: 6.545420e-03	ci left: 3.475320e-01	ci right 3.498156e-01	k: 233611	n:670000
KS ci ratio: 9.650209e-02	ci left: 2.338132e-03	ci right 2.576650e-03	k: 1645	n:670000
HHEX   670000 perm   321 sec   (2089 perm/sec)   p_kst 2.455224e-03   p_cons 3.486731e-01   p_joint 9.522388e-04

Joint ci ratio: 1.539186e-01	ci left: 8.795895e-04	ci right 1.027656e-03	k: 647	n:680000
Cons ci ratio: 6.499128e-03	ci left: 3.473997e-01	ci right 3.496663e-01	k: 237002	n:680000
KS ci ratio: 9.577745e-02	ci left: 2.339629e-03	ci right 2.576406e-03	k: 1670	n:680000
HHEX   680000 perm   329 sec   (2068 perm/sec)   p_kst 2.455882e-03   p_cons 3.485324e-01   p_joint 9.514706e-04

Joint ci ratio: 1.530942e-01	ci left: 8.765970e-04	ci right 1.023297e-03	k: 654	n:690000
Cons ci ratio: 6.451662e-03	ci left: 3.474220e-01	ci right 3.496721e-01	k: 240497	n:690000
KS ci ratio: 9.520969e-02	ci left: 2.334014e-03	ci right 2.568745e-03	k: 1690	n:690000
HHEX   690000 perm   336 sec   (2051 perm/sec)   p_kst 2.449275e-03   p_cons 3.485464e-01   p_joint 9.478261e-04

Joint ci ratio: 1.394769e-01	ci left: 1.048517e-03	ci right 1.207086e-03	k: 788	n:700000
Cons ci ratio: 6.406410e-03	ci left: 3.473594e-01	ci right 3.495933e-01	k: 243933	n:700000
KS ci ratio: 9.462418e-02	ci left: 2.329959e-03	ci right 2.562761e-03	k: 1711	n:700000
HHEX   700000 perm   344 sec   (2033 perm/sec)   p_kst 2.444286e-03   p_cons 3.484757e-01   p_joint 1.125714e-03

Joint ci ratio: 1.316127e-01	ci left: 1.165745e-03	ci right 1.331325e-03	k: 885	n:710000
Cons ci ratio: 6.362452e-03	ci left: 3.472733e-01	ci right 3.494913e-01	k: 247351	n:710000
KS ci ratio: 9.369771e-02	ci left: 2.343903e-03	ci right 2.575679e-03	k: 1745	n:710000
HHEX   710000 perm   352 sec   (2017 perm/sec)   p_kst 2.457746e-03   p_cons 3.483817e-01   p_joint 1.246479e-03

Joint ci ratio: 1.311699e-01	ci left: 1.157613e-03	ci right 1.321442e-03	k: 891	n:720000
Cons ci ratio: 6.319019e-03	ci left: 3.472161e-01	ci right 3.494185e-01	k: 250788	n:720000
KS ci ratio: 9.306034e-02	ci left: 2.343903e-03	ci right 2.574018e-03	k: 1769	n:720000
HHEX   720000 perm   360 sec   (2000 perm/sec)   p_kst 2.456944e-03   p_cons 3.483167e-01   p_joint 1.237500e-03

Joint ci ratio: 1.374037e-01	ci left: 1.037165e-03	ci right 1.191495e-03	k: 812	n:730000
Cons ci ratio: 6.275346e-03	ci left: 3.472412e-01	ci right 3.494285e-01	k: 254284	n:730000
KS ci ratio: 9.251338e-02	ci left: 2.339895e-03	ci right 2.568192e-03	k: 1790	n:730000
HHEX   730000 perm   368 sec   (1984 perm/sec)   p_kst 2.452055e-03   p_cons 3.483342e-01   p_joint 1.112329e-03

Joint ci ratio: 1.486241e-01	ci left: 8.693813e-04	ci right 1.010248e-03	k: 694	n:740000
Cons ci ratio: 6.232270e-03	ci left: 3.472873e-01	ci right 3.494598e-01	k: 257796	n:740000
KS ci ratio: 9.189972e-02	ci left: 2.339959e-03	ci right 2.566667e-03	k: 1814	n:740000
HHEX   740000 perm   376 sec   (1969 perm/sec)   p_kst 2.451351e-03   p_cons 3.483730e-01   p_joint 9.378378e-04

Joint ci ratio: 1.474616e-01	ci left: 8.719130e-04	ci right 1.011988e-03	k: 705	n:750000
Cons ci ratio: 6.190941e-03	ci left: 3.472683e-01	ci right 3.494262e-01	k: 261260	n:750000
KS ci ratio: 9.122356e-02	ci left: 2.343935e-03	ci right 2.569268e-03	k: 1841	n:750000
HHEX   750000 perm   384 sec   (1954 perm/sec)   p_kst 2.454667e-03   p_cons 3.483467e-01   p_joint 9.400000e-04

Joint ci ratio: 1.283250e-01	ci left: 1.147609e-03	ci right 1.306232e-03	k: 931	n:760000
Cons ci ratio: 6.150691e-03	ci left: 3.472301e-01	ci right 3.493737e-01	k: 264709	n:760000
KS ci ratio: 9.058639e-02	ci left: 2.346527e-03	ci right 2.570450e-03	k: 1867	n:760000
HHEX   760000 perm   392 sec   (1939 perm/sec)   p_kst 2.456579e-03   p_cons 3.483013e-01   p_joint 1.225000e-03

Joint ci ratio: 1.273044e-01	ci left: 1.151563e-03	ci right 1.309371e-03	k: 946	n:770000
Cons ci ratio: 6.109817e-03	ci left: 3.472968e-01	ci right 3.494265e-01	k: 268238	n:770000
KS ci ratio: 8.981989e-02	ci left: 2.356674e-03	ci right 2.579563e-03	k: 1899	n:770000
HHEX   770000 perm   401 sec   (1920 perm/sec)   p_kst 2.466234e-03   p_cons 3.483610e-01   p_joint 1.228571e-03

Joint ci ratio: 1.445231e-01	ci left: 8.741995e-04	ci right 1.011602e-03	k: 734	n:780000
Cons ci ratio: 6.070707e-03	ci left: 3.472900e-01	ci right 3.494060e-01	k: 271711	n:780000
KS ci ratio: 8.928122e-02	ci left: 2.355287e-03	ci right 2.576639e-03	k: 1922	n:780000
HHEX   780000 perm   409 sec   (1905 perm/sec)   p_kst 2.464103e-03   p_cons 3.483474e-01   p_joint 9.410256e-04

Joint ci ratio: 1.438400e-01	ci left: 8.716747e-04	ci right 1.007977e-03	k: 741	n:790000
Cons ci ratio: 6.030624e-03	ci left: 3.474125e-01	ci right 3.495152e-01	k: 275286	n:790000
KS ci ratio: 8.895859e-02	ci left: 2.342799e-03	ci right 2.562140e-03	k: 1936	n:790000
HHEX   790000 perm   418 sec   (1889 perm/sec)   p_kst 2.450633e-03   p_cons 3.484633e-01   p_joint 9.379747e-04

Joint ci ratio: 1.425960e-01	ci left: 8.764466e-04	ci right 1.012209e-03	k: 754	n:800000
Cons ci ratio: 5.992907e-03	ci left: 3.474121e-01	ci right 3.495015e-01	k: 278765	n:800000
KS ci ratio: 8.834486e-02	ci left: 2.346516e-03	ci right 2.564611e-03	k: 1963	n:800000
HHEX   800000 perm   428 sec   (1871 perm/sec)   p_kst 2.453750e-03   p_cons 3.484563e-01   p_joint 9.425000e-04

Joint ci ratio: 1.241959e-01	ci left: 1.152091e-03	ci right 1.305833e-03	k: 994	n:810000
Cons ci ratio: 5.957234e-03	ci left: 3.473093e-01	ci right 3.493856e-01	k: 282161	n:810000
KS ci ratio: 8.787650e-02	ci left: 2.342901e-03	ci right 2.559447e-03	k: 1984	n:810000
HHEX   810000 perm   436 sec   (1857 perm/sec)   p_kst 2.449383e-03   p_cons 3.483469e-01   p_joint 1.227160e-03

Joint ci ratio: 1.293773e-01	ci left: 1.045931e-03	ci right 1.191776e-03	k: 916	n:820000
Cons ci ratio: 5.920853e-03	ci left: 3.473114e-01	ci right 3.493751e-01	k: 285641	n:820000
KS ci ratio: 8.726301e-02	ci left: 2.347728e-03	ci right 2.563128e-03	k: 2012	n:820000
HHEX   820000 perm   445 sec   (1842 perm/sec)   p_kst 2.453659e-03   p_cons 3.483427e-01   p_joint 1.117073e-03

Joint ci ratio: 1.284007e-01	ci left: 1.049653e-03	ci right 1.194828e-03	k: 930	n:830000
Cons ci ratio: 5.884850e-03	ci left: 3.473352e-01	ci right 3.493864e-01	k: 289139	n:830000
KS ci ratio: 8.672611e-02	ci left: 2.348908e-03	ci right 2.563022e-03	k: 2037	n:830000
HHEX   830000 perm   454 sec   (1829 perm/sec)   p_kst 2.454217e-03   p_cons 3.483602e-01   p_joint 1.120482e-03

Joint ci ratio: 1.388748e-01	ci left: 8.818024e-04	ci right 1.014535e-03	k: 795	n:840000
Cons ci ratio: 5.849035e-03	ci left: 3.473941e-01	ci right 3.494331e-01	k: 292667	n:840000
KS ci ratio: 8.632493e-02	ci left: 2.343074e-03	ci right 2.555619e-03	k: 2056	n:840000
HHEX   840000 perm   463 sec   (1815 perm/sec)   p_kst 2.447619e-03   p_cons 3.484131e-01   p_joint 9.464286e-04

Joint ci ratio: 1.271104e-01	ci left: 1.046594e-03	ci right 1.189782e-03	k: 949	n:850000
Cons ci ratio: 5.814650e-03	ci left: 3.473906e-01	ci right 3.494175e-01	k: 296143	n:850000
KS ci ratio: 8.570196e-02	ci left: 2.350043e-03	ci right 2.561605e-03	k: 2086	n:850000
HHEX   850000 perm   472 sec   (1802 perm/sec)   p_kst 2.454118e-03   p_cons 3.484035e-01   p_joint 1.116471e-03

Joint ci ratio: 1.265127e-01	ci left: 1.044557e-03	ci right 1.186744e-03	k: 958	n:860000
Cons ci ratio: 5.780450e-03	ci left: 3.474197e-01	ci right 3.494349e-01	k: 299647	n:860000
KS ci ratio: 8.519320e-02	ci left: 2.351166e-03	ci right 2.561510e-03	k: 2111	n:860000
HHEX   860000 perm   481 sec   (1786 perm/sec)   p_kst 2.454651e-03   p_cons 3.484267e-01   p_joint 1.113953e-03

Joint ci ratio: 1.255991e-01	ci left: 1.048136e-03	ci right 1.189702e-03	k: 972	n:870000
Cons ci ratio: 5.746395e-03	ci left: 3.474837e-01	ci right 3.494874e-01	k: 303182	n:870000
KS ci ratio: 8.469339e-02	ci left: 2.352266e-03	ci right 2.561413e-03	k: 2136	n:870000
HHEX   870000 perm   491 sec   (1773 perm/sec)   p_kst 2.455172e-03   p_cons 3.484851e-01   p_joint 1.117241e-03

Joint ci ratio: 1.251500e-01	ci left: 1.043930e-03	ci right 1.184387e-03	k: 979	n:880000
Cons ci ratio: 5.713392e-03	ci left: 3.475101e-01	ci right 3.495023e-01	k: 306685	n:880000
KS ci ratio: 8.428047e-02	ci left: 2.348895e-03	ci right 2.556674e-03	k: 2157	n:880000
HHEX   880000 perm   500 sec   (1760 perm/sec)   p_kst 2.451136e-03   p_cons 3.485057e-01   p_joint 1.112500e-03

Joint ci ratio: 1.240780e-01	ci left: 1.050706e-03	ci right 1.190775e-03	k: 996	n:890000
Cons ci ratio: 5.679364e-03	ci left: 3.476627e-01	ci right 3.496439e-01	k: 310301	n:890000
KS ci ratio: 8.373880e-02	ci left: 2.353303e-03	ci right 2.560069e-03	k: 2185	n:890000
HHEX   890000 perm   509 sec   (1748 perm/sec)   p_kst 2.455056e-03   p_cons 3.486528e-01   p_joint 1.119101e-03

Joint ci ratio: 1.234605e-01	ci left: 1.049799e-03	ci right 1.189000e-03	k: 1006	n:900000
Cons ci ratio: 5.646806e-03	ci left: 3.477420e-01	ci right 3.497123e-01	k: 313854	n:900000
KS ci ratio: 8.330179e-02	ci left: 2.352177e-03	ci right 2.557713e-03	k: 2208	n:900000
HHEX   900000 perm   519 sec   (1735 perm/sec)   p_kst 2.453333e-03   p_cons 3.487267e-01   p_joint 1.117778e-03

Joint ci ratio: 1.225509e-01	ci left: 1.054239e-03	ci right 1.192924e-03	k: 1021	n:910000
Cons ci ratio: 5.615100e-03	ci left: 3.477955e-01	ci right 3.497549e-01	k: 317385	n:910000
KS ci ratio: 8.294609e-02	ci left: 2.346774e-03	ci right 2.550919e-03	k: 2227	n:910000
HHEX   910000 perm   528 sec   (1724 perm/sec)   p_kst 2.447253e-03   p_cons 3.487747e-01   p_joint 1.121978e-03

Joint ci ratio: 1.220742e-01	ci left: 1.051209e-03	ci right 1.188919e-03	k: 1029	n:920000
Cons ci ratio: 5.584202e-03	ci left: 3.478250e-01	ci right 3.497738e-01	k: 320895	n:920000
KS ci ratio: 8.237470e-02	ci left: 2.354265e-03	ci right 2.557584e-03	k: 2258	n:920000
HHEX   920000 perm   537 sec   (1712 perm/sec)   p_kst 2.454348e-03   p_cons 3.487989e-01   p_joint 1.118478e-03

Joint ci ratio: 1.213692e-01	ci left: 1.052417e-03	ci right 1.189431e-03	k: 1041	n:930000
Cons ci ratio: 5.554466e-03	ci left: 3.478002e-01	ci right 3.497384e-01	k: 324355	n:930000
KS ci ratio: 8.194060e-02	ci left: 2.354227e-03	ci right 2.556419e-03	k: 2282	n:930000
HHEX   930000 perm   547 sec   (1699 perm/sec)   p_kst 2.453763e-03   p_cons 3.487688e-01   p_joint 1.119355e-03

Joint ci ratio: 1.204477e-01	ci left: 1.057727e-03	ci right 1.194313e-03	k: 1057	n:940000
Cons ci ratio: 5.525835e-03	ci left: 3.477238e-01	ci right 3.496516e-01	k: 327766	n:940000
KS ci ratio: 8.140724e-02	ci left: 2.360445e-03	ci right 2.561789e-03	k: 2312	n:940000
HHEX   940000 perm   558 sec   (1685 perm/sec)   p_kst 2.459574e-03   p_cons 3.486872e-01   p_joint 1.124468e-03

Joint ci ratio: 1.200515e-01	ci left: 1.053740e-03	ci right 1.189331e-03	k: 1064	n:950000
Cons ci ratio: 5.498151e-03	ci left: 3.476070e-01	ci right 3.495245e-01	k: 331137	n:950000
KS ci ratio: 8.102294e-02	ci left: 2.358286e-03	ci right 2.558451e-03	k: 2334	n:950000
HHEX   950000 perm   568 sec   (1672 perm/sec)   p_kst 2.456842e-03   p_cons 3.485653e-01   p_joint 1.120000e-03

Joint ci ratio: 1.192699e-01	ci left: 1.056910e-03	ci right 1.191962e-03	k: 1078	n:960000
Cons ci ratio: 5.468558e-03	ci left: 3.476852e-01	ci right 3.495928e-01	k: 334693	n:960000
KS ci ratio: 8.067836e-02	ci left: 2.354132e-03	ci right 2.553056e-03	k: 2354	n:960000
HHEX   960000 perm   578 sec   (1660 perm/sec)   p_kst 2.452083e-03   p_cons 3.486385e-01   p_joint 1.122917e-03

Joint ci ratio: 1.129493e-01	ci left: 1.170143e-03	ci right 1.311213e-03	k: 1202	n:970000
Cons ci ratio: 5.439338e-03	ci left: 3.477701e-01	ci right 3.496679e-01	k: 338257	n:970000
KS ci ratio: 8.027039e-02	ci left: 2.354107e-03	ci right 2.551976e-03	k: 2378	n:970000
HHEX   970000 perm   588 sec   (1649 perm/sec)   p_kst 2.451546e-03   p_cons 3.487186e-01   p_joint 1.239175e-03

Joint ci ratio: 1.122977e-01	ci left: 1.172086e-03	ci right 1.312521e-03	k: 1216	n:980000
Cons ci ratio: 5.411724e-03	ci left: 3.477574e-01	ci right 3.496455e-01	k: 341727	n:980000
KS ci ratio: 7.998543e-02	ci left: 2.347085e-03	ci right 2.543630e-03	k: 2395	n:980000
HHEX   980000 perm   598 sec   (1639 perm/sec)   p_kst 2.443878e-03   p_cons 3.487010e-01   p_joint 1.240816e-03

Joint ci ratio: 1.176459e-01	ci left: 1.054288e-03	ci right 1.187042e-03	k: 1108	n:990000
Cons ci ratio: 5.384826e-03	ci left: 3.477198e-01	ci right 3.495983e-01	k: 345172	n:990000
KS ci ratio: 7.963734e-02	ci left: 2.344165e-03	ci right 2.539572e-03	k: 2416	n:990000
HHEX   990000 perm   608 sec   (1628 perm/sec)   p_kst 2.440404e-03   p_cons 3.486586e-01   p_joint 1.119192e-03

Joint ci ratio: 1.111169e-01	ci left: 1.173918e-03	ci right 1.312996e-03	k: 1242	n:1000000
Cons ci ratio: 5.358325e-03	ci left: 3.476830e-01	ci right 3.495519e-01	k: 348617	n:1000000
KS ci ratio: 7.917988e-02	ci left: 2.348168e-03	ci right 2.542732e-03	k: 2444	n:1000000
HHEX   1000000 perm   618 sec   (1617 perm/sec)   p_kst 2.444000e-03   p_cons 3.486170e-01   p_joint 1.242000e-03

Joint ci ratio: 1.165477e-01	ci left: 1.053594e-03	ci right 1.184938e-03	k: 1129	n:1010000
Cons ci ratio: 5.331340e-03	ci left: 3.477211e-01	ci right 3.495808e-01	k: 352137	n:1010000
KS ci ratio: 7.876215e-02	ci left: 2.350153e-03	ci right 2.543807e-03	k: 2470	n:1010000
HHEX   1010000 perm   629 sec   (1607 perm/sec)   p_kst 2.445545e-03   p_cons 3.486505e-01   p_joint 1.117822e-03

Joint ci ratio: 1.101030e-01	ci left: 1.172825e-03	ci right 1.310424e-03	k: 1265	n:1020000
Cons ci ratio: 5.305307e-03	ci left: 3.477114e-01	ci right 3.495620e-01	k: 355609	n:1020000
KS ci ratio: 7.842972e-02	ci left: 2.347296e-03	ci right 2.539861e-03	k: 2491	n:1020000
HHEX   1020000 perm   639 sec   (1597 perm/sec)   p_kst 2.442157e-03   p_cons 3.486363e-01   p_joint 1.240196e-03

Joint ci ratio: 1.095849e-01	ci left: 1.172769e-03	ci right 1.309672e-03	k: 1277	n:1030000
Cons ci ratio: 5.278603e-03	ci left: 3.477922e-01	ci right 3.496339e-01	k: 359174	n:1030000
KS ci ratio: 7.807033e-02	ci left: 2.346399e-03	ci right 2.537969e-03	k: 2514	n:1030000
HHEX   1030000 perm   649 sec   (1587 perm/sec)   p_kst 2.440777e-03   p_cons 3.487126e-01   p_joint 1.239806e-03

Joint ci ratio: 1.089895e-01	ci left: 1.174586e-03	ci right 1.310908e-03	k: 1291	n:1040000
Cons ci ratio: 5.253466e-03	ci left: 3.477706e-01	ci right 3.496033e-01	k: 362634	n:1040000
KS ci ratio: 7.763920e-02	ci left: 2.350237e-03	ci right 2.541012e-03	k: 2542	n:1040000
HHEX   1040000 perm   660 sec   (1577 perm/sec)   p_kst 2.444231e-03   p_cons 3.486865e-01   p_joint 1.241346e-03

Joint ci ratio: 1.143916e-01	ci left: 1.053227e-03	ci right 1.181932e-03	k: 1172	n:1050000
Cons ci ratio: 5.227796e-03	ci left: 3.478265e-01	ci right 3.496505e-01	k: 366175	n:1050000
KS ci ratio: 7.729052e-02	ci left: 2.349334e-03	ci right 2.539141e-03	k: 2565	n:1050000
HHEX   1050000 perm   671 sec   (1566 perm/sec)   p_kst 2.442857e-03   p_cons 3.487381e-01   p_joint 1.116190e-03

Joint ci ratio: 1.139072e-01	ci left: 1.052455e-03	ci right 1.180485e-03	k: 1182	n:1060000
Cons ci ratio: 5.202683e-03	ci left: 3.478653e-01	ci right 3.496808e-01	k: 369699	n:1060000
KS ci ratio: 7.697630e-02	ci left: 2.346600e-03	ci right 2.535381e-03	k: 2586	n:1060000
HHEX   1060000 perm   681 sec   (1556 perm/sec)   p_kst 2.439623e-03   p_cons 3.487726e-01   p_joint 1.115094e-03

Joint ci ratio: 1.133338e-01	ci left: 1.053515e-03	ci right 1.180986e-03	k: 1194	n:1070000
Cons ci ratio: 5.179089e-03	ci left: 3.478016e-01	ci right 3.496085e-01	k: 373114	n:1070000
KS ci ratio: 7.659232e-02	ci left: 2.348501e-03	ci right 2.536451e-03	k: 2612	n:1070000
HHEX   1070000 perm   692 sec   (1546 perm/sec)   p_kst 2.441121e-03   p_cons 3.487047e-01   p_joint 1.115888e-03

Joint ci ratio: 1.069000e-01	ci left: 1.177030e-03	ci right 1.310853e-03	k: 1342	n:1080000
Cons ci ratio: 5.155246e-03	ci left: 3.477891e-01	ci right 3.495876e-01	k: 376583	n:1080000
KS ci ratio: 7.606969e-02	ci left: 2.359454e-03	ci right 2.546934e-03	k: 2648	n:1080000
HHEX   1080000 perm   703 sec   (1537 perm/sec)   p_kst 2.451852e-03   p_cons 3.486880e-01   p_joint 1.242593e-03

Joint ci ratio: 1.064649e-01	ci left: 1.176054e-03	ci right 1.309187e-03	k: 1353	n:1090000
Cons ci ratio: 5.131791e-03	ci left: 3.477714e-01	ci right 3.495615e-01	k: 380046	n:1090000
KS ci ratio: 7.574164e-02	ci left: 2.358508e-03	ci right 2.545069e-03	k: 2671	n:1090000
HHEX   1090000 perm   714 sec   (1527 perm/sec)   p_kst 2.450459e-03   p_cons 3.486661e-01   p_joint 1.241284e-03

Joint ci ratio: 1.058800e-01	ci left: 1.178637e-03	ci right 1.311284e-03	k: 1368	n:1100000
Cons ci ratio: 5.108562e-03	ci left: 3.477621e-01	ci right 3.495441e-01	k: 383518	n:1100000
KS ci ratio: 7.529187e-02	ci left: 2.365609e-03	ci right 2.551572e-03	k: 2703	n:1100000
HHEX   1100000 perm   725 sec   (1518 perm/sec)   p_kst 2.457273e-03   p_cons 3.486527e-01   p_joint 1.243636e-03

Joint ci ratio: 1.055721e-01	ci left: 1.175036e-03	ci right 1.306868e-03	k: 1376	n:1110000
Cons ci ratio: 5.085070e-03	ci left: 3.478044e-01	ci right 3.495784e-01	k: 387047	n:1110000
KS ci ratio: 7.502892e-02	ci left: 2.361092e-03	ci right 2.546024e-03	k: 2722	n:1110000
HHEX   1110000 perm   736 sec   (1509 perm/sec)   p_kst 2.452252e-03   p_cons 3.486910e-01   p_joint 1.239640e-03

Joint ci ratio: 1.047758e-01	ci left: 1.182801e-03	ci right 1.314443e-03	k: 1397	n:1120000
Cons ci ratio: 5.063432e-03	ci left: 3.477085e-01	ci right 3.494744e-01	k: 390422	n:1120000
KS ci ratio: 7.456453e-02	ci left: 2.369801e-03	ci right 2.554216e-03	k: 2756	n:1120000
HHEX   1120000 perm   747 sec   (1499 perm/sec)   p_kst 2.460714e-03   p_cons 3.485911e-01   p_joint 1.247321e-03

Joint ci ratio: 1.045147e-01	ci left: 1.178366e-03	ci right 1.309167e-03	k: 1404	n:1130000
Cons ci ratio: 5.040917e-03	ci left: 3.477178e-01	ci right 3.494759e-01	k: 393914	n:1130000
KS ci ratio: 7.424211e-02	ci left: 2.369673e-03	ci right 2.553246e-03	k: 2780	n:1130000
HHEX   1130000 perm   759 sec   (1489 perm/sec)   p_kst 2.460177e-03   p_cons 3.485965e-01   p_joint 1.242478e-03

Joint ci ratio: 1.041449e-01	ci left: 1.176573e-03	ci right 1.306684e-03	k: 1414	n:1140000
Cons ci ratio: 5.018740e-03	ci left: 3.477234e-01	ci right 3.494738e-01	k: 397402	n:1140000
KS ci ratio: 7.391063e-02	ci left: 2.370410e-03	ci right 2.553185e-03	k: 2805	n:1140000
HHEX   1140000 perm   771 sec   (1480 perm/sec)   p_kst 2.460526e-03   p_cons 3.485982e-01   p_joint 1.240351e-03

Joint ci ratio: 1.037789e-01	ci left: 1.174811e-03	ci right 1.304244e-03	k: 1424	n:1150000
Cons ci ratio: 4.996661e-03	ci left: 3.477464e-01	ci right 3.494892e-01	k: 400910	n:1150000
KS ci ratio: 7.364878e-02	ci left: 2.366868e-03	ci right 2.548696e-03	k: 2825	n:1150000
HHEX   1150000 perm   782 sec   (1470 perm/sec)   p_kst 2.456522e-03   p_cons 3.486174e-01   p_joint 1.238261e-03

Joint ci ratio: 1.033447e-01	ci left: 1.174760e-03	ci right 1.303613e-03	k: 1436	n:1160000
Cons ci ratio: 4.975098e-03	ci left: 3.477483e-01	ci right 3.494835e-01	k: 404394	n:1160000
KS ci ratio: 7.329937e-02	ci left: 2.369312e-03	ci right 2.550428e-03	k: 2852	n:1160000
HHEX   1160000 perm   794 sec   (1461 perm/sec)   p_kst 2.458621e-03   p_cons 3.486155e-01   p_joint 1.237931e-03

Joint ci ratio: 1.029515e-01	ci left: 1.173879e-03	ci right 1.302115e-03	k: 1447	n:1170000
Cons ci ratio: 4.953914e-03	ci left: 3.477408e-01	ci right 3.494685e-01	k: 407867	n:1170000
KS ci ratio: 7.295490e-02	ci left: 2.371717e-03	ci right 2.552128e-03	k: 2879	n:1170000
HHEX   1170000 perm   806 sec   (1451 perm/sec)   p_kst 2.460684e-03   p_cons 3.486043e-01   p_joint 1.236752e-03

Joint ci ratio: 1.023872e-01	ci left: 1.177142e-03	ci right 1.304987e-03	k: 1463	n:1180000
Cons ci ratio: 4.932455e-03	ci left: 3.477833e-01	ci right 3.495038e-01	k: 411399	n:1180000
KS ci ratio: 7.272818e-02	ci left: 2.366593e-03	ci right 2.546032e-03	k: 2897	n:1180000
HHEX   1180000 perm   818 sec   (1442 perm/sec)   p_kst 2.455085e-03   p_cons 3.486432e-01   p_joint 1.239831e-03

Joint ci ratio: 1.019356e-01	ci left: 1.177895e-03	ci right 1.305224e-03	k: 1476	n:1190000
Cons ci ratio: 4.912036e-03	ci left: 3.477547e-01	ci right 3.494679e-01	k: 414847	n:1190000
KS ci ratio: 7.235448e-02	ci left: 2.371459e-03	ci right 2.550304e-03	k: 2927	n:1190000
HHEX   1190000 perm   830 sec   (1434 perm/sec)   p_kst 2.459664e-03   p_cons 3.486109e-01   p_joint 1.240336e-03

Joint ci ratio: 1.015582e-01	ci left: 1.177013e-03	ci right 1.303747e-03	k: 1487	n:1200000
Cons ci ratio: 4.891465e-03	ci left: 3.477640e-01	ci right 3.494701e-01	k: 418340	n:1200000
KS ci ratio: 7.203531e-02	ci left: 2.372973e-03	ci right 2.551109e-03	k: 2953	n:1200000
HHEX   1200000 perm   842 sec   (1425 perm/sec)   p_kst 2.460833e-03   p_cons 3.486167e-01   p_joint 1.239167e-03

Joint ci ratio: 1.010164e-01	ci left: 1.180174e-03	ci right 1.306531e-03	k: 1503	n:1210000
Cons ci ratio: 4.870946e-03	ci left: 3.477922e-01	ci right 3.494912e-01	k: 421856	n:1210000
KS ci ratio: 7.169622e-02	ci left: 2.376086e-03	ci right 2.553582e-03	k: 2981	n:1210000
HHEX   1210000 perm   854 sec   (1416 perm/sec)   p_kst 2.463636e-03   p_cons 3.486413e-01   p_joint 1.242149e-03

Joint ci ratio: 1.006491e-01	ci left: 1.179289e-03	ci right 1.305065e-03	k: 1514	n:1220000
Cons ci ratio: 4.850560e-03	ci left: 3.478314e-01	ci right 3.495234e-01	k: 425386	n:1220000
KS ci ratio: 7.137376e-02	ci left: 2.378345e-03	ci right 2.555178e-03	k: 3008	n:1220000
HHEX   1220000 perm   867 sec   (1408 perm/sec)   p_kst 2.465574e-03   p_cons 3.486770e-01   p_joint 1.240984e-03

Joint ci ratio: 1.002528e-01	ci left: 1.179213e-03	ci right 1.304456e-03	k: 1526	n:1230000
Cons ci ratio: 4.830610e-03	ci left: 3.478529e-01	ci right 3.495381e-01	k: 428895	n:1230000
KS ci ratio: 7.107908e-02	ci left: 2.378972e-03	ci right 2.555091e-03	k: 3033	n:1230000
HHEX   1230000 perm   879 sec   (1399 perm/sec)   p_kst 2.465854e-03   p_cons 3.486951e-01   p_joint 1.240650e-03

Joint ci ratio: 9.979632e-02	ci left: 1.180711e-03	ci right 1.305509e-03	k: 1540	n:1240000
Cons ci ratio: 4.811348e-03	ci left: 3.478321e-01	ci right 3.495105e-01	k: 432352	n:1240000
KS ci ratio: 7.086936e-02	ci left: 2.374045e-03	ci right 2.549259e-03	k: 3051	n:1240000
HHEX   1240000 perm   891 sec   (1392 perm/sec)   p_kst 2.460484e-03   p_cons 3.486710e-01   p_joint 1.241935e-03

Outputting figure to mutsig2_images.part000000000078/HHEX.2_829_1240000_0.0024605_0.34867_0.0012419.png
                gene_name: HHEX
               theta_stop: 0.100 
                    nperm: 1240000 
                     p_ks: 0.0025 
        ci_ks_bounds_left: 0.0024 
       ci_ks_bounds_right: 0.0025 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.0012 
     ci_joint_bounds_left: 0.0012 
    ci_joint_bounds_right: 0.0013 

Current progress: 84 percent done.
HHLA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.156145e-02	ci left: 2.224724e-01	ci right 2.390847e-01	k: 2307	n:10000
Cons ci ratio: 8.516918e-02	ci left: 1.673034e-01	ci right 1.822866e-01	k: 1747	n:10000
KS ci ratio: 2.640239e-02	ci left: 6.787147e-01	ci right 6.969757e-01	k: 6879	n:10000
HHLA2   10000 perm   2 sec   (6146 perm/sec)   p_kst 6.879000e-01   p_cons 1.747000e-01   p_joint 2.307000e-01

Outputting figure to mutsig2_images.part000000000078/HHLA2.2_1277_10000_0.6879_0.1747_0.2307.png
                gene_name: HHLA2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 86 percent done.
HIAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.091607e-02	ci left: 9.228612e-01	ci right 9.330878e-01	k: 9281	n:10000
Cons ci ratio: 4.326865e-02	ci left: 4.409135e-01	ci right 4.605152e-01	k: 4507	n:10000
KS ci ratio: 3.608784e-02	ci left: 5.313727e-01	ci right 5.510033e-01	k: 5412	n:10000
HIAT1   10000 perm   2 sec   (5955 perm/sec)   p_kst 5.412000e-01   p_cons 4.507000e-01   p_joint 9.281000e-01

Outputting figure to mutsig2_images.part000000000078/HIAT1.2_1521_10000_0.5412_0.4507_0.9281.png
                gene_name: HIAT1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 88 percent done.
HIATL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.237722e-02	ci left: 9.036042e-01	ci right 9.149561e-01	k: 9094	n:10000
Cons ci ratio: 4.663840e-02	ci left: 4.042228e-01	ci right 4.236274e-01	k: 4139	n:10000
KS ci ratio: 1.230957e-02	ci left: 9.045292e-01	ci right 9.158305e-01	k: 9103	n:10000
HIATL1   10000 perm   2 sec   (6210 perm/sec)   p_kst 9.103000e-01   p_cons 4.139000e-01   p_joint 9.094000e-01

Outputting figure to mutsig2_images.part000000000078/HIATL1.2_1569_10000_0.9103_0.4139_0.9094.png
                gene_name: HIATL1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 89 percent done.
HIF1AN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.251226e-02	ci left: 5.826932e-01	ci right 6.020529e-01	k: 5924	n:10000
Cons ci ratio: 3.310805e-02	ci left: 5.738649e-01	ci right 5.932863e-01	k: 5836	n:10000
KS ci ratio: 5.297765e-02	ci left: 3.443228e-01	ci right 3.631625e-01	k: 3537	n:10000
HIF1AN   10000 perm   2 sec   (6110 perm/sec)   p_kst 3.537000e-01   p_cons 5.836000e-01   p_joint 5.924000e-01

Outputting figure to mutsig2_images.part000000000078/HIF1AN.2_1082_10000_0.3537_0.5836_0.5924.png
                gene_name: HIF1AN
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 91 percent done.
HIGD1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.338490e-02	ci left: 1.427601e-01	ci right 1.568446e-01	k: 1497	n:10000
Cons ci ratio: 8.096203e-02	ci left: 1.821553e-01	ci right 1.976258e-01	k: 1898	n:10000
KS ci ratio: 8.600512e-02	ci left: 1.645515e-01	ci right 1.794401e-01	k: 1719	n:10000
HIGD1B   10000 perm   1 sec   (7496 perm/sec)   p_kst 1.719000e-01   p_cons 1.898000e-01   p_joint 1.497000e-01

Outputting figure to mutsig2_images.part000000000078/HIGD1B.2_312_10000_0.1719_0.1898_0.1497.png
                gene_name: HIGD1B
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 93 percent done.
HIP1R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.209660e-02	ci left: 5.889150e-01	ci right 6.082275e-01	k: 5986	n:10000
KS ci ratio: 1.109475e-02	ci left: 9.205911e-01	ci right 9.309592e-01	k: 9259	n:10000
HIP1R   10000 perm   2 sec   (5146 perm/sec)   p_kst 9.259000e-01   p_cons 5.986000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HIP1R.2_3335_10000_0.9259_0.5986_1.png
                gene_name: HIP1R
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
HIRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.345662e-02	ci left: 5.687500e-01	ci right 5.882042e-01	k: 5785	n:10000
Cons ci ratio: 4.570908e-02	ci left: 4.139884e-01	ci right 4.334561e-01	k: 4237	n:10000
KS ci ratio: 3.888965e-02	ci left: 4.940505e-01	ci right 5.137472e-01	k: 5039	n:10000
HIRA   10000 perm   2 sec   (5001 perm/sec)   p_kst 5.039000e-01   p_cons 4.237000e-01   p_joint 5.785000e-01

Outputting figure to mutsig2_images.part000000000078/HIRA.2_3154_10000_0.5039_0.4237_0.5785.png
                gene_name: HIRA
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 96 percent done.
HIST1H1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.500901e-02	ci left: 7.017023e-01	ci right 7.195748e-01	k: 7107	n:10000
Cons ci ratio: 3.301959e-02	ci left: 5.751689e-01	ci right 5.945816e-01	k: 5849	n:10000
KS ci ratio: 1.062509e-01	ci left: 1.133992e-01	ci right 1.262232e-01	k: 1197	n:10000
HIST1H1D   10000 perm   2 sec   (6566 perm/sec)   p_kst 1.197000e-01   p_cons 5.849000e-01   p_joint 7.107000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 2.310535e-02	ci left: 5.831460e-01	ci right 5.968278e-01	k: 11800	n:20000
KS ci ratio: 7.538251e-02	ci left: 1.145924e-01	ci right 1.236187e-01	k: 2381	n:20000
HIST1H1D   20000 perm   4 sec   (5658 perm/sec)   p_kst 1.190500e-01   p_cons 5.900000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000078/HIST1H1D.2_670_20000_0.11905_0.59_1.png
                gene_name: HIST1H1D
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
HIST1H2AA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
Cons ci ratio: 3.470045e-02	ci left: 5.508059e-01	ci right 5.703587e-01	k: 5606	n:10000
KS ci ratio: 9.663204e-02	ci left: 1.344301e-01	ci right 1.481796e-01	k: 1412	n:10000
HIST1H2AA   10000 perm   1 sec   (7272 perm/sec)   p_kst 1.412000e-01   p_cons 5.606000e-01   p_joint 2.945000e-01

Outputting figure to mutsig2_images.part000000000078/HIST1H2AA.2_400_10000_0.1412_0.5606_0.2945.png
                gene_name: HIST1H2AA
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000078
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 78 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1646>
Subject: Job 9893966: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1646>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000079> was used as the working directory.
Started at Sat Oct  6 00:11:26 2012
Results reported at Sat Oct  6 00:21:57 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000079.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000079.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 79  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000079.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    640.66 sec.
    Max Memory :      3470 MB
    Max Swap   :      5963 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
79
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 79
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 79: processing genes 7033 - 7122
Calculating significance of each gene.
Using projection method.
7033	HIST1H2AJ	4.435366e-01
7034	HIST1H2AK	1
7035	HIST1H2AL	2.844847e-01
7036	HIST1H2AM	3.076032e-01
7037	HIST1H2BA	6.973362e-03
7038	HIST1H2BB	2.174574e-01
7039	HIST1H2BC	5.955702e-01
7040	HIST1H2BD	1.425278e-01
7041	HIST1H2BE	3.665850e-01
7042	HIST1H2BF	4.504336e-01
7043	HIST1H2BG	1
7044	HIST1H2BH	3.901658e-01
7045	HIST1H2BI	1
7046	HIST1H2BJ	1
7047	HIST1H2BK	5.688130e-01
7048	HIST1H2BL	6.055138e-01
7049	HIST1H2BM	2.303099e-01
7050	HIST1H2BN	1
7051	HIST1H2BO	4.334784e-01
7052	HIST1H3A	1
7053	HIST1H3B	4.598651e-01
7054	HIST1H3C	4.597897e-02
7055	HIST1H3D	2.750646e-02
7056	HIST1H3E	1
7057	HIST1H3F	1
7058	HIST1H3G	1
7059	HIST1H3H	1
7060	HIST1H3I	1
7061	HIST1H3J	1
7062	HIST1H4A	4.932074e-01
7063	HIST1H4B	4.564532e-01
7064	HIST1H4C	1
7065	HIST1H4D	1
7066	HIST1H4E	8.204232e-02
7067	HIST1H4F	4.219056e-01
7068	HIST1H4G	4.383554e-01
7069	HIST1H4H	1
7070	HIST1H4I	1
7071	HIST1H4J	1
7072	HIST1H4K	1
7073	HIST1H4L	4.293676e-01
7074	HIST2H2AB	6.147013e-01
7075	HIST2H2AC	1
7076	HIST2H2BE	1
7077	HIST2H2BF	4.674865e-01
7078	HIST2H3D	5.511719e-01
7079	HIST3H2A	1
7080	HIST3H2BB	2.828493e-01
7081	HIST3H3	3.051988e-01
7082	HIST4H4	1
7083	HIVEP1	9.963723e-01
7084	HIVEP2	7.007918e-01
7085	HIVEP3	7.257100e-01
7086	HJURP	9.234654e-01
7087	HK1	4.041986e-01
7088	HK2	8.684399e-01
7089	HK3	7.891009e-01
7090	HKDC1	5.698570e-01
7091	HKR1	3.954781e-03
7092	HLA-A	3.073903e-01
7093	HLA-B	3.882701e-02
7094	HLA-C	4.985775e-01
7095	HLA-DMA	4.217933e-01
7096	HLA-DMB	7.386710e-01
7097	HLA-DOA	7.961762e-01
7098	HLA-DOB	4.418238e-01
7099	HLA-DPA1	5.725591e-01
7100	HLA-DPB1	1.894381e-01
7101	HLA-DQA1	3.530153e-01
7102	HLA-DQA2	8.397600e-02
7103	HLA-DQB1	6.298171e-01
7104	HLA-DRA	1.340110e-03
In gene HLA-DRB1 the following bins exceed PROBCAP:
    COAD-AA-3844	categ 7	N = 784     n = 1	mu =   3.29e-08
7105	HLA-DRB1	2.037897e-01
7106	HLA-DRB5	7.464583e-01
7107	HLA-E	7.822237e-01
7108	HLA-F	6.827117e-01
7109	HLA-G	6.485027e-01
7110	HLCS	2.534375e-01
7111	HLF	4.532319e-01
7112	HLTF	6.778380e-01
7113	HLX	1.974753e-01
7114	HM13	7.578427e-01
7115	HMBOX1	8.206666e-01
7116	HMBS	5.146975e-01
In gene HMCN1 the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 17295   n = 1	mu =   1.03e-07
7117	HMCN1	2.659121e-04
7118	HMG20A	7.344638e-03
7119	HMG20B	1
7120	HMGA1	1
7121	HMGA2	1.010183e-01
7122	HMGB1	6.490593e-01
Done

Running MutSig 2:
Scatter job 79: processing genes 7033 - 7122
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HMCN1
Processing conservation and coverage...
57% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.403689e-02	ci left: 4.322344e-01	ci right 4.517994e-01	k: 4420	n:10000
Cons ci ratio: 6.301137e-03	ci left: 9.716422e-01	ci right 9.778770e-01	k: 9749	n:10000
KS ci ratio: 5.763252e-02	ci left: 3.070909e-01	ci right 3.254162e-01	k: 3162	n:10000
HMCN1   10000 perm   5 sec   (2074 perm/sec)   p_kst 3.162000e-01   p_cons 9.749000e-01   p_joint 4.420000e-01

Outputting figure to mutsig2_images.part000000000079/HMCN1.49_17336_10000_0.3162_0.9749_0.442.png
                gene_name: HMCN1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 3 percent done.
HIVEP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.617064e-02	ci left: 4.091051e-01	ci right 4.285422e-01	k: 4188	n:10000
KS ci ratio: 2.179286e-02	ci left: 7.554502e-01	ci right 7.721959e-01	k: 7639	n:10000
HIVEP2   10000 perm   3 sec   (3655 perm/sec)   p_kst 7.639000e-01   p_cons 4.188000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HIVEP2.12_7365_10000_0.7639_0.4188_1.png
                gene_name: HIVEP2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
HIVEP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.113784e-01	ci left: 1.317075e-02	ci right 1.811726e-02	k: 155	n:10000
Cons ci ratio: 4.284655e-01	ci left: 6.526864e-03	ci right 1.016828e-02	k: 82	n:10000
KS ci ratio: 2.292716e-01	ci left: 2.513779e-02	ci right 3.174074e-02	k: 283	n:10000
HIVEP3   10000 perm   3 sec   (3796 perm/sec)   p_kst 2.830000e-02   p_cons 8.200000e-03   p_joint 1.550000e-02

Joint ci ratio: 3.313245e-01	ci left: 5.799905e-03	ci right 8.146877e-03	k: 138	n:20000
Cons ci ratio: 3.057768e-01	ci left: 6.904673e-03	ci right 9.441445e-03	k: 162	n:20000
KS ci ratio: 1.686536e-01	ci left: 2.407833e-02	ci right 2.856082e-02	k: 525	n:20000
HIVEP3   20000 perm   6 sec   (3551 perm/sec)   p_kst 2.625000e-02   p_cons 8.100000e-03   p_joint 6.900000e-03

Joint ci ratio: 3.512923e-01	ci left: 3.408625e-03	ci right 4.889942e-03	k: 123	n:30000
Cons ci ratio: 2.392788e-01	ci left: 7.805623e-03	ci right 9.957774e-03	k: 265	n:30000
KS ci ratio: 1.366427e-01	ci left: 2.487288e-02	ci right 2.855288e-02	k: 800	n:30000
HIVEP3   30000 perm   9 sec   (3444 perm/sec)   p_kst 2.666667e-02   p_cons 8.833333e-03   p_joint 4.100000e-03

Joint ci ratio: 3.766879e-01	ci left: 2.192729e-03	ci right 3.231562e-03	k: 107	n:40000
Cons ci ratio: 2.077153e-01	ci left: 7.908047e-03	ci right 9.764313e-03	k: 352	n:40000
KS ci ratio: 1.187369e-01	ci left: 2.494793e-02	ci right 2.812131e-02	k: 1060	n:40000
HIVEP3   40000 perm   12 sec   (3366 perm/sec)   p_kst 2.650000e-02   p_cons 8.800000e-03   p_joint 2.675000e-03

Joint ci ratio: 2.245125e-01	ci left: 5.379655e-03	ci right 6.758638e-03	k: 302	n:50000
Cons ci ratio: 1.791943e-01	ci left: 8.630088e-03	ci right 1.034758e-02	k: 473	n:50000
KS ci ratio: 1.066258e-01	ci left: 2.491489e-02	ci right 2.774047e-02	k: 1315	n:50000
HIVEP3   50000 perm   15 sec   (3321 perm/sec)   p_kst 2.630000e-02   p_cons 9.460000e-03   p_joint 6.040000e-03

Joint ci ratio: 1.437019e-01	ci left: 1.136908e-02	ci right 1.314523e-02	k: 734	n:60000
Cons ci ratio: 1.596335e-01	ci left: 9.155264e-03	ci right 1.075934e-02	k: 596	n:60000
KS ci ratio: 9.782028e-02	ci left: 2.479012e-02	ci right 2.735600e-02	k: 1563	n:60000
HIVEP3   60000 perm   18 sec   (3265 perm/sec)   p_kst 2.605000e-02   p_cons 9.933333e-03   p_joint 1.223333e-02

Joint ci ratio: 1.542405e-01	ci left: 8.437289e-03	ci right 9.860989e-03	k: 639	n:70000
Cons ci ratio: 1.492600e-01	ci left: 9.028453e-03	ci right 1.049833e-02	k: 682	n:70000
KS ci ratio: 9.025139e-02	ci left: 2.505720e-02	ci right 2.743943e-02	k: 1836	n:70000
HIVEP3   70000 perm   22 sec   (3203 perm/sec)   p_kst 2.622857e-02   p_cons 9.742857e-03   p_joint 9.128571e-03

Joint ci ratio: 1.521868e-01	ci left: 7.598747e-03	ci right 8.862306e-03	k: 657	n:80000
Cons ci ratio: 1.406769e-01	ci left: 8.935896e-03	ci right 1.030002e-02	k: 768	n:80000
KS ci ratio: 8.430770e-02	ci left: 2.520205e-02	ci right 2.743248e-02	k: 2104	n:80000
HIVEP3   80000 perm   25 sec   (3147 perm/sec)   p_kst 2.630000e-02   p_cons 9.600000e-03   p_joint 8.212500e-03

Joint ci ratio: 2.028209e-01	ci left: 3.714121e-03	ci right 4.562775e-03	k: 371	n:90000
Cons ci ratio: 1.398387e-01	ci left: 8.049970e-03	ci right 9.270905e-03	k: 778	n:90000
KS ci ratio: 7.936787e-02	ci left: 2.534052e-02	ci right 2.744571e-02	k: 2374	n:90000
HIVEP3   90000 perm   29 sec   (3114 perm/sec)   p_kst 2.637778e-02   p_cons 8.644444e-03   p_joint 4.122222e-03

Joint ci ratio: 1.537306e-01	ci left: 5.963197e-03	ci right 6.965752e-03	k: 645	n:100000
Cons ci ratio: 1.296413e-01	ci left: 8.472328e-03	ci right 9.656411e-03	k: 905	n:100000
KS ci ratio: 7.541087e-02	ci left: 2.531692e-02	ci right 2.731068e-02	k: 2630	n:100000
HIVEP3   100000 perm   33 sec   (3050 perm/sec)   p_kst 2.630000e-02   p_cons 9.050000e-03   p_joint 6.450000e-03

Joint ci ratio: 1.454071e-01	ci left: 6.086182e-03	ci right 7.049202e-03	k: 721	n:110000
Cons ci ratio: 1.238971e-01	ci left: 8.459144e-03	ci right 9.585153e-03	k: 991	n:110000
KS ci ratio: 7.191551e-02	ci left: 2.535335e-02	ci right 2.725355e-02	k: 2892	n:110000
HIVEP3   110000 perm   37 sec   (2997 perm/sec)   p_kst 2.629091e-02   p_cons 9.009091e-03   p_joint 6.554545e-03

Joint ci ratio: 1.432674e-01	ci left: 5.755641e-03	ci right 6.651807e-03	k: 743	n:120000
Cons ci ratio: 1.189101e-01	ci left: 8.441037e-03	ci right 9.516227e-03	k: 1076	n:120000
KS ci ratio: 6.879793e-02	ci left: 2.543465e-02	ci right 2.725500e-02	k: 3160	n:120000
HIVEP3   120000 perm   41 sec   (2960 perm/sec)   p_kst 2.633333e-02   p_cons 8.966667e-03   p_joint 6.191667e-03

Joint ci ratio: 1.464015e-01	ci left: 5.082948e-03	ci right 5.893196e-03	k: 712	n:130000
Cons ci ratio: 1.136934e-01	ci left: 8.546080e-03	ci right 9.583689e-03	k: 1177	n:130000
KS ci ratio: 6.624229e-02	ci left: 2.536115e-02	ci right 2.710622e-02	k: 3409	n:130000
HIVEP3   130000 perm   44 sec   (2927 perm/sec)   p_kst 2.622308e-02   p_cons 9.053846e-03   p_joint 5.476923e-03

Joint ci ratio: 1.554528e-01	ci left: 4.169857e-03	ci right 4.879477e-03	k: 632	n:140000
Cons ci ratio: 1.085525e-01	ci left: 8.727349e-03	ci right 9.735991e-03	k: 1291	n:140000
KS ci ratio: 6.389800e-02	ci left: 2.534143e-02	ci right 2.702113e-02	k: 3664	n:140000
HIVEP3   140000 perm   48 sec   (2891 perm/sec)   p_kst 2.617143e-02   p_cons 9.221429e-03   p_joint 4.514286e-03

Joint ci ratio: 1.530667e-01	ci left: 4.020028e-03	ci right 4.692685e-03	k: 652	n:150000
Cons ci ratio: 1.048063e-01	ci left: 8.755480e-03	ci right 9.730298e-03	k: 1385	n:150000
KS ci ratio: 6.156080e-02	ci left: 2.550914e-02	ci right 2.713591e-02	k: 3947	n:150000
HIVEP3   150000 perm   53 sec   (2854 perm/sec)   p_kst 2.631333e-02   p_cons 9.233333e-03   p_joint 4.346667e-03

Joint ci ratio: 1.532055e-01	ci left: 3.762727e-03	ci right 4.392952e-03	k: 651	n:160000
Cons ci ratio: 1.017007e-01	ci left: 8.731877e-03	ci right 9.673537e-03	k: 1471	n:160000
KS ci ratio: 5.957114e-02	ci left: 2.556447e-02	ci right 2.714026e-02	k: 4215	n:160000
HIVEP3   160000 perm   57 sec   (2811 perm/sec)   p_kst 2.634375e-02   p_cons 9.193750e-03   p_joint 4.068750e-03

Joint ci ratio: 1.514845e-01	ci left: 3.626242e-03	ci right 4.226164e-03	k: 666	n:170000
Cons ci ratio: 9.882372e-02	ci left: 8.717166e-03	ci right 9.629103e-03	k: 1558	n:170000
KS ci ratio: 5.769008e-02	ci left: 2.567783e-02	ci right 2.720896e-02	k: 4494	n:170000
HIVEP3   170000 perm   61 sec   (2784 perm/sec)   p_kst 2.643529e-02   p_cons 9.164706e-03   p_joint 3.917647e-03

Joint ci ratio: 1.086649e-01	ci left: 6.787568e-03	ci right 7.572875e-03	k: 1291	n:180000
Cons ci ratio: 9.608953e-02	ci left: 8.720693e-03	ci right 9.606335e-03	k: 1648	n:180000
KS ci ratio: 5.609139e-02	ci left: 2.567518e-02	ci right 2.716235e-02	k: 4754	n:180000
HIVEP3   180000 perm   66 sec   (2747 perm/sec)   p_kst 2.641111e-02   p_cons 9.155556e-03   p_joint 7.172222e-03

Joint ci ratio: 1.188314e-01	ci left: 5.356206e-03	ci right 6.037956e-03	k: 1081	n:190000
Cons ci ratio: 9.324626e-02	ci left: 8.785855e-03	ci right 9.650271e-03	k: 1750	n:190000
KS ci ratio: 5.449600e-02	ci left: 2.578758e-02	ci right 2.723744e-02	k: 5036	n:190000
HIVEP3   190000 perm   70 sec   (2722 perm/sec)   p_kst 2.650526e-02   p_cons 9.210526e-03   p_joint 5.689474e-03

Joint ci ratio: 1.227290e-01	ci left: 4.763424e-03	ci right 5.391053e-03	k: 1014	n:200000
Cons ci ratio: 9.093897e-02	ci left: 8.786198e-03	ci right 9.628119e-03	k: 1840	n:200000
KS ci ratio: 5.310125e-02	ci left: 2.582019e-02	ci right 2.723358e-02	k: 5304	n:200000
HIVEP3   200000 perm   75 sec   (2678 perm/sec)   p_kst 2.652000e-02   p_cons 9.200000e-03   p_joint 5.070000e-03

Joint ci ratio: 1.202685e-01	ci left: 4.730511e-03	ci right 5.340418e-03	k: 1056	n:210000
Cons ci ratio: 8.893444e-02	ci left: 8.758805e-03	ci right 9.578639e-03	k: 1924	n:210000
KS ci ratio: 5.178453e-02	ci left: 2.587363e-02	ci right 2.725377e-02	k: 5577	n:210000
HIVEP3   210000 perm   79 sec   (2649 perm/sec)   p_kst 2.655714e-02   p_cons 9.161905e-03   p_joint 5.028571e-03

Joint ci ratio: 1.234930e-01	ci left: 4.277453e-03	ci right 4.844813e-03	k: 1002	n:220000
Cons ci ratio: 8.707875e-02	ci left: 8.729641e-03	ci right 9.528827e-03	k: 2007	n:220000
KS ci ratio: 5.060557e-02	ci left: 2.587770e-02	ci right 2.722572e-02	k: 5840	n:220000
HIVEP3   220000 perm   84 sec   (2623 perm/sec)   p_kst 2.654545e-02   p_cons 9.122727e-03   p_joint 4.554545e-03

Joint ci ratio: 1.215136e-01	ci left: 4.230552e-03	ci right 4.782049e-03	k: 1035	n:230000
Cons ci ratio: 8.494594e-02	ci left: 8.784041e-03	ci right 9.567534e-03	k: 2109	n:230000
KS ci ratio: 4.948283e-02	ci left: 2.590323e-02	ci right 2.722178e-02	k: 6108	n:230000
HIVEP3   230000 perm   88 sec   (2601 perm/sec)   p_kst 2.655652e-02   p_cons 9.169565e-03   p_joint 4.500000e-03

Joint ci ratio: 1.186822e-01	ci left: 4.256357e-03	ci right 4.797382e-03	k: 1085	n:240000
Cons ci ratio: 8.284919e-02	ci left: 8.858612e-03	ci right 9.628310e-03	k: 2217	n:240000
KS ci ratio: 4.842384e-02	ci left: 2.593517e-02	ci right 2.722630e-02	k: 6378	n:240000
HIVEP3   240000 perm   93 sec   (2574 perm/sec)   p_kst 2.657500e-02   p_cons 9.237500e-03   p_joint 4.520833e-03

Joint ci ratio: 1.020801e-01	ci left: 5.564548e-03	ci right 6.166995e-03	k: 1465	n:250000
Cons ci ratio: 8.114724e-02	ci left: 8.872560e-03	ci right 9.626884e-03	k: 2311	n:250000
KS ci ratio: 4.740443e-02	ci left: 2.599250e-02	ci right 2.725851e-02	k: 6655	n:250000
HIVEP3   250000 perm   98 sec   (2546 perm/sec)   p_kst 2.662000e-02   p_cons 9.244000e-03   p_joint 5.860000e-03

Joint ci ratio: 1.000859e-01	ci left: 5.571714e-03	ci right 6.162460e-03	k: 1524	n:260000
Cons ci ratio: 7.949604e-02	ci left: 8.896895e-03	ci right 9.637183e-03	k: 2408	n:260000
KS ci ratio: 4.659199e-02	ci left: 2.588598e-02	ci right 2.712461e-02	k: 6890	n:260000
HIVEP3   260000 perm   104 sec   (2503 perm/sec)   p_kst 2.650000e-02   p_cons 9.261538e-03   p_joint 5.861538e-03

Joint ci ratio: 9.826661e-02	ci left: 5.571229e-03	ci right 6.150567e-03	k: 1581	n:270000
Cons ci ratio: 7.784769e-02	ci left: 8.941364e-03	ci right 9.669227e-03	k: 2511	n:270000
KS ci ratio: 4.570149e-02	ci left: 2.591937e-02	ci right 2.713527e-02	k: 7161	n:270000
HIVEP3   270000 perm   109 sec   (2479 perm/sec)   p_kst 2.652222e-02   p_cons 9.300000e-03   p_joint 5.855556e-03

Outputting figure to mutsig2_images.part000000000079/HIVEP3.9_7245_270000_0.026522_0.0093_0.0058556.png
                gene_name: HIVEP3
               theta_stop: 0.098 
                    nperm: 270000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.0093 
      ci_cons_bounds_left: 0.0089 
     ci_cons_bounds_right: 0.0097 
                  p_joint: 0.0059 
     ci_joint_bounds_left: 0.0056 
    ci_joint_bounds_right: 0.0062 

Current progress: 9 percent done.
HKR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.307694e-02	ci left: 4.431087e-01	ci right 4.627188e-01	k: 4529	n:10000
Cons ci ratio: 3.126171e-02	ci left: 6.015643e-01	ci right 6.207708e-01	k: 6112	n:10000
KS ci ratio: 8.173326e-02	ci left: 1.793015e-01	ci right 1.946813e-01	k: 1869	n:10000
HKR1   10000 perm   2 sec   (4900 perm/sec)   p_kst 1.869000e-01   p_cons 6.112000e-01   p_joint 4.529000e-01

Outputting figure to mutsig2_images.part000000000079/HKR1.9_1996_10000_0.1869_0.6112_0.4529.png
                gene_name: HKR1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 12 percent done.
HIVEP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.902211e-02	ci left: 6.364352e-01	ci right 6.552797e-01	k: 6459	n:10000
Cons ci ratio: 4.812099e-02	ci left: 3.891836e-01	ci right 4.084753e-01	k: 3988	n:10000
KS ci ratio: 2.981327e-02	ci left: 6.239682e-01	ci right 6.429540e-01	k: 6335	n:10000
HIVEP1   10000 perm   3 sec   (3889 perm/sec)   p_kst 6.335000e-01   p_cons 3.988000e-01   p_joint 6.459000e-01

Outputting figure to mutsig2_images.part000000000079/HIVEP1.8_8189_10000_0.6335_0.3988_0.6459.png
                gene_name: HIVEP1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 15 percent done.
HKDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.355244e-02	ci left: 2.129985e-01	ci right 2.293642e-01	k: 2211	n:10000
Cons ci ratio: 2.186533e-02	ci left: 7.542360e-01	ci right 7.710108e-01	k: 7627	n:10000
KS ci ratio: 1.154273e-01	ci left: 9.740099e-02	ci right 1.094311e-01	k: 1033	n:10000
HKDC1   10000 perm   2 sec   (5111 perm/sec)   p_kst 1.033000e-01   p_cons 7.627000e-01   p_joint 2.211000e-01

Joint ci ratio: 4.102250e-02	ci left: 3.069736e-01	ci right 3.198806e-01	k: 6268	n:20000
Cons ci ratio: 1.551667e-02	ci left: 7.554301e-01	ci right 7.672938e-01	k: 15228	n:20000
KS ci ratio: 8.175332e-02	ci left: 9.886943e-02	ci right 1.073463e-01	k: 2061	n:20000
HKDC1   20000 perm   4 sec   (4585 perm/sec)   p_kst 1.030500e-01   p_cons 7.614000e-01   p_joint 3.134000e-01

Outputting figure to mutsig2_images.part000000000079/HKDC1.8_2826_20000_0.10305_0.7614_0.3134.png
                gene_name: HKDC1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 18 percent done.
HLTF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.416829e-01	ci left: 6.604181e-02	ci right 7.620974e-02	k: 710	n:10000
Cons ci ratio: 1.378589e-01	ci left: 6.962154e-02	ci right 8.002777e-02	k: 747	n:10000
KS ci ratio: 7.869324e-02	ci left: 1.909179e-01	ci right 2.066579e-01	k: 1987	n:10000
HLTF   10000 perm   3 sec   (3358 perm/sec)   p_kst 1.987000e-01   p_cons 7.470000e-02   p_joint 7.100000e-02

Joint ci ratio: 8.617888e-02	ci left: 8.969559e-02	ci right 9.782296e-02	k: 1874	n:20000
Cons ci ratio: 9.734244e-02	ci left: 7.133775e-02	ci right 7.868638e-02	k: 1499	n:20000
KS ci ratio: 5.568893e-02	ci left: 1.929912e-01	ci right 2.040966e-01	k: 3970	n:20000
HLTF   20000 perm   6 sec   (3622 perm/sec)   p_kst 1.985000e-01   p_cons 7.495000e-02   p_joint 9.370000e-02

Outputting figure to mutsig2_images.part000000000079/HLTF.8_3130_20000_0.1985_0.07495_0.0937.png
                gene_name: HLTF
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.098 

Current progress: 21 percent done.
HLX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.125939e-01	ci left: 1.019814e-01	ci right 1.142479e-01	k: 1080	n:10000
Cons ci ratio: 5.755268e-02	ci left: 3.076861e-01	ci right 3.260207e-01	k: 3168	n:10000
KS ci ratio: 1.890957e-01	ci left: 3.729324e-02	ci right 4.517686e-02	k: 411	n:10000
HLX   10000 perm   2 sec   (4487 perm/sec)   p_kst 4.110000e-02   p_cons 3.168000e-01   p_joint 1.080000e-01

Joint ci ratio: 1.209472e-01	ci left: 4.687441e-02	ci right 5.295730e-02	k: 997	n:20000
Cons ci ratio: 4.104633e-02	ci left: 3.067251e-01	ci right 3.196293e-01	k: 6263	n:20000
KS ci ratio: 1.357013e-01	ci left: 3.732625e-02	ci right 4.280850e-02	k: 800	n:20000
HLX   20000 perm   5 sec   (3998 perm/sec)   p_kst 4.000000e-02   p_cons 3.131500e-01   p_joint 4.985000e-02

Joint ci ratio: 8.767754e-02	ci left: 5.972137e-02	ci right 6.523040e-02	k: 1873	n:30000
Cons ci ratio: 3.348049e-02	ci left: 3.083515e-01	ci right 3.188846e-01	k: 9408	n:30000
KS ci ratio: 1.094551e-01	ci left: 3.875160e-02	ci right 4.327117e-02	k: 1229	n:30000
HLX   30000 perm   8 sec   (3828 perm/sec)   p_kst 4.096667e-02   p_cons 3.136000e-01   p_joint 6.243333e-02

Joint ci ratio: 6.896901e-02	ci left: 7.214200e-02	ci right 7.731994e-02	k: 2988	n:40000
Cons ci ratio: 2.899553e-02	ci left: 3.090545e-01	ci right 3.181726e-01	k: 12544	n:40000
KS ci ratio: 9.455108e-02	ci left: 3.924870e-02	ci right 4.316826e-02	k: 1647	n:40000
HLX   40000 perm   11 sec   (3797 perm/sec)   p_kst 4.117500e-02   p_cons 3.136000e-01   p_joint 7.470000e-02

Outputting figure to mutsig2_images.part000000000079/HLX.7_1483_40000_0.041175_0.3136_0.0747.png
                gene_name: HLX
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.077 

Current progress: 24 percent done.
HK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.888270e-02	ci left: 6.386479e-01	ci right 6.574658e-01	k: 6481	n:10000
KS ci ratio: 2.559385e-02	ci left: 6.920201e-01	ci right 7.100626e-01	k: 7011	n:10000
HK1   10000 perm   3 sec   (3802 perm/sec)   p_kst 7.011000e-01   p_cons 6.481000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HK1.6_3004_10000_0.7011_0.6481_1.png
                gene_name: HK1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
HLCS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.429861e-01	ci left: 6.488166e-02	ci right 7.497062e-02	k: 698	n:10000
Cons ci ratio: 2.880045e-02	ci left: 6.399554e-01	ci right 6.587575e-01	k: 6494	n:10000
KS ci ratio: 2.162892e-01	ci left: 2.835310e-02	ci right 3.532314e-02	k: 317	n:10000
HLCS   10000 perm   2 sec   (5509 perm/sec)   p_kst 3.170000e-02   p_cons 6.494000e-01   p_joint 6.980000e-02

Joint ci ratio: 1.020536e-01	ci left: 6.518352e-02	ci right 7.224249e-02	k: 1373	n:20000
Cons ci ratio: 1.973464e-02	ci left: 6.570035e-01	ci right 6.701489e-01	k: 13272	n:20000
KS ci ratio: 1.489962e-01	ci left: 3.095285e-02	ci right 3.598398e-02	k: 668	n:20000
HLCS   20000 perm   4 sec   (4944 perm/sec)   p_kst 3.340000e-02   p_cons 6.636000e-01   p_joint 6.865000e-02

Joint ci ratio: 7.761271e-02	ci left: 7.531708e-02	ci right 8.143153e-02	k: 2350	n:30000
Cons ci ratio: 1.684122e-02	ci left: 6.381501e-01	ci right 6.490221e-01	k: 19308	n:30000
KS ci ratio: 1.218759e-01	ci left: 3.129835e-02	ci right 3.539267e-02	k: 999	n:30000
HLCS   30000 perm   6 sec   (4650 perm/sec)   p_kst 3.330000e-02   p_cons 6.436000e-01   p_joint 7.833333e-02

Joint ci ratio: 6.159291e-02	ci left: 8.911083e-02	ci right 9.479857e-02	k: 3677	n:40000
Cons ci ratio: 1.452389e-02	ci left: 6.408143e-01	ci right 6.502146e-01	k: 25821	n:40000
KS ci ratio: 1.050734e-01	ci left: 3.185552e-02	ci right 3.541260e-02	k: 1344	n:40000
HLCS   40000 perm   9 sec   (4490 perm/sec)   p_kst 3.360000e-02   p_cons 6.455250e-01   p_joint 9.192500e-02

Joint ci ratio: 6.138874e-02	ci left: 7.308065e-02	ci right 7.772879e-02	k: 3769	n:50000
Cons ci ratio: 1.235042e-02	ci left: 6.641534e-01	ci right 6.724270e-01	k: 33415	n:50000
KS ci ratio: 9.471923e-02	ci left: 3.154908e-02	ci right 3.470543e-02	k: 1655	n:50000
HLCS   50000 perm   11 sec   (4362 perm/sec)   p_kst 3.310000e-02   p_cons 6.683000e-01   p_joint 7.538000e-02

Outputting figure to mutsig2_images.part000000000079/HLCS.6_2217_50000_0.0331_0.6683_0.07538.png
                gene_name: HLCS
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.078 

Current progress: 29 percent done.
HK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.591685e-02	ci left: 8.515144e-01	ci right 8.652761e-01	k: 8585	n:10000
Cons ci ratio: 4.327738e-02	ci left: 4.408137e-01	ci right 4.604151e-01	k: 4506	n:10000
KS ci ratio: 1.620383e-02	ci left: 8.470282e-01	ci right 8.609649e-01	k: 8541	n:10000
HK3   10000 perm   2 sec   (4931 perm/sec)   p_kst 8.541000e-01   p_cons 4.506000e-01   p_joint 8.585000e-01

Outputting figure to mutsig2_images.part000000000079/HK3.5_2844_10000_0.8541_0.4506_0.8585.png
                gene_name: HK3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 32 percent done.
HLA-DRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.233711e-02	ci left: 4.516917e-01	ci right 4.713307e-01	k: 4615	n:10000
Cons ci ratio: 9.271244e-03	ci left: 9.425310e-01	ci right 9.514063e-01	k: 9471	n:10000
KS ci ratio: 6.740994e-02	ci left: 2.441069e-01	ci right 2.612374e-01	k: 2526	n:10000
HLA-DRA   10000 perm   2 sec   (5200 perm/sec)   p_kst 2.526000e-01   p_cons 9.471000e-01   p_joint 4.615000e-01

Outputting figure to mutsig2_images.part000000000079/HLA-DRA.5_781_10000_0.2526_0.9471_0.4615.png
                gene_name: HLA-DRA
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 35 percent done.
HMG20A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.581985e-02	ci left: 5.350779e-01	ci right 5.546960e-01	k: 5449	n:10000
Cons ci ratio: 4.337237e-03	ci left: 9.856678e-01	ci right 9.900411e-01	k: 9880	n:10000
KS ci ratio: 4.999771e-02	ci left: 3.710696e-01	ci right 3.902000e-01	k: 3806	n:10000
HMG20A   10000 perm   2 sec   (6215 perm/sec)   p_kst 3.806000e-01   p_cons 9.880000e-01   p_joint 5.449000e-01

Outputting figure to mutsig2_images.part000000000079/HMG20A.5_1076_10000_0.3806_0.988_0.5449.png
                gene_name: HMG20A
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 38 percent done.
HIST1H2BA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.163580e-02	ci left: 7.580813e-01	ci right 7.747632e-01	k: 7665	n:10000
Cons ci ratio: 2.993534e-02	ci left: 6.220585e-01	ci right 6.410648e-01	k: 6316	n:10000
KS ci ratio: 2.822100e-02	ci left: 6.492111e-01	ci right 6.678964e-01	k: 6586	n:10000
HIST1H2BA   10000 perm   1 sec   (7027 perm/sec)   p_kst 6.586000e-01   p_cons 6.316000e-01   p_joint 7.665000e-01

Outputting figure to mutsig2_images.part000000000079/HIST1H2BA.4_388_10000_0.6586_0.6316_0.7665.png
                gene_name: HIST1H2BA
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 41 percent done.
HIST1H3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.489344e-02	ci left: 8.672346e-01	ci right 8.803468e-01	k: 8739	n:10000
KS ci ratio: 5.275781e-03	ci left: 9.795206e-01	ci right 9.847932e-01	k: 9823	n:10000
HIST1H3C   10000 perm   2 sec   (6574 perm/sec)   p_kst 9.823000e-01   p_cons 8.739000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HIST1H3C.3_415_10000_0.9823_0.8739_1.png
                gene_name: HIST1H3C
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
HIST1H3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.422880e-02	ci left: 3.337920e-01	ci right 3.524995e-01	k: 3431	n:10000
Cons ci ratio: 1.854117e-02	ci left: 8.094827e-01	ci right 8.247321e-01	k: 8172	n:10000
KS ci ratio: 6.888722e-02	ci left: 2.361016e-01	ci right 2.530474e-01	k: 2445	n:10000
HIST1H3D   10000 perm   2 sec   (6661 perm/sec)   p_kst 2.445000e-01   p_cons 8.172000e-01   p_joint 3.431000e-01

Outputting figure to mutsig2_images.part000000000079/HIST1H3D.3_415_10000_0.2445_0.8172_0.3431.png
                gene_name: HIST1H3D
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 47 percent done.
HJURP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.435967e-02	ci left: 4.286440e-01	ci right 4.481919e-01	k: 4384	n:10000
Cons ci ratio: 9.028637e-02	ci left: 1.513922e-01	ci right 1.658072e-01	k: 1585	n:10000
KS ci ratio: 2.053356e-02	ci left: 7.765116e-01	ci right 7.927222e-01	k: 7847	n:10000
HJURP   10000 perm   2 sec   (5755 perm/sec)   p_kst 7.847000e-01   p_cons 1.585000e-01   p_joint 4.384000e-01

Outputting figure to mutsig2_images.part000000000079/HJURP.3_2283_10000_0.7847_0.1585_0.4384.png
                gene_name: HJURP
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 50 percent done.
HK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.341096e-02	ci left: 1.733008e-01	ci right 1.884856e-01	k: 1808	n:10000
Cons ci ratio: 5.710380e-02	ci left: 3.110592e-01	ci right 3.294457e-01	k: 3202	n:10000
KS ci ratio: 1.297800e-01	ci left: 7.814990e-02	ci right 8.909410e-02	k: 835	n:10000
HK2   10000 perm   2 sec   (5454 perm/sec)   p_kst 8.350000e-02   p_cons 3.202000e-01   p_joint 1.808000e-01

Joint ci ratio: 5.679772e-02	ci left: 1.868581e-01	ci right 1.978315e-01	k: 3846	n:20000
Cons ci ratio: 4.037854e-02	ci left: 3.137853e-01	ci right 3.267670e-01	k: 6405	n:20000
KS ci ratio: 9.246592e-02	ci left: 7.862504e-02	ci right 8.629687e-02	k: 1648	n:20000
HK2   20000 perm   4 sec   (5049 perm/sec)   p_kst 8.240000e-02   p_cons 3.202500e-01   p_joint 1.923000e-01

Outputting figure to mutsig2_images.part000000000079/HK2.3_2826_20000_0.0824_0.32025_0.1923.png
                gene_name: HK2
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 53 percent done.
HLA-A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.071583e-02	ci left: 2.851807e-01	ci right 3.031394e-01	k: 2941	n:10000
Cons ci ratio: 1.920806e-02	ci left: 7.985170e-01	ci right 8.141041e-01	k: 8064	n:10000
KS ci ratio: 1.109326e-01	ci left: 1.048095e-01	ci right 1.172181e-01	k: 1109	n:10000
HLA-A   10000 perm   2 sec   (6119 perm/sec)   p_kst 1.109000e-01   p_cons 8.064000e-01   p_joint 2.941000e-01

Joint ci ratio: 5.344736e-02	ci left: 2.062536e-01	ci right 2.176302e-01	k: 4238	n:20000
Cons ci ratio: 1.454291e-02	ci left: 7.783821e-01	ci right 7.898351e-01	k: 15683	n:20000
KS ci ratio: 7.781324e-02	ci left: 1.082015e-01	ci right 1.170115e-01	k: 2251	n:20000
HLA-A   20000 perm   4 sec   (5422 perm/sec)   p_kst 1.125500e-01   p_cons 7.841500e-01   p_joint 2.119000e-01

Outputting figure to mutsig2_images.part000000000079/HLA-A.3_1130_20000_0.11255_0.78415_0.2119.png
                gene_name: HLA-A
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 56 percent done.
HLA-B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.755134e-02	ci left: 5.115541e-01	ci right 5.312334e-01	k: 5214	n:10000
Cons ci ratio: 1.718632e-02	ci left: 8.314445e-01	ci right 8.459577e-01	k: 8388	n:10000
KS ci ratio: 4.896405e-02	ci left: 3.809211e-01	ci right 4.001427e-01	k: 3905	n:10000
HLA-B   10000 perm   2 sec   (6289 perm/sec)   p_kst 3.905000e-01   p_cons 8.388000e-01   p_joint 5.214000e-01

Outputting figure to mutsig2_images.part000000000079/HLA-B.3_1117_10000_0.3905_0.8388_0.5214.png
                gene_name: HLA-B
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 59 percent done.
HLA-DQA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.579547e-02	ci left: 6.886930e-01	ci right 7.067917e-01	k: 6978	n:10000
Cons ci ratio: 5.093290e-02	ci left: 3.624157e-01	ci right 3.814590e-01	k: 3719	n:10000
KS ci ratio: 3.794440e-02	ci left: 5.063518e-01	ci right 5.260388e-01	k: 5162	n:10000
HLA-DQA2   10000 perm   2 sec   (5973 perm/sec)   p_kst 5.162000e-01   p_cons 3.719000e-01   p_joint 6.978000e-01

Outputting figure to mutsig2_images.part000000000079/HLA-DQA2.3_784_10000_0.5162_0.3719_0.6978.png
                gene_name: HLA-DQA2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 62 percent done.
HIST1H2BB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.735360e-02	ci left: 6.632026e-01	ci right 6.816968e-01	k: 6725	n:10000
KS ci ratio: 5.272375e-02	ci left: 3.465091e-01	ci right 3.653749e-01	k: 3559	n:10000
HIST1H2BB   10000 perm   2 sec   (6506 perm/sec)   p_kst 3.559000e-01   p_cons 6.725000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HIST1H2BB.2_385_10000_0.3559_0.6725_1.png
                gene_name: HIST1H2BB
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
HIST1H2BD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.524631e-02	ci left: 6.977684e-01	ci right 7.157111e-01	k: 7068	n:10000
Cons ci ratio: 2.363374e-02	ci left: 7.246163e-01	ci right 7.420476e-01	k: 7334	n:10000
KS ci ratio: 5.844174e-02	ci left: 3.011400e-01	ci right 3.193706e-01	k: 3102	n:10000
HIST1H2BD   10000 perm   1 sec   (6890 perm/sec)   p_kst 3.102000e-01   p_cons 7.334000e-01   p_joint 7.068000e-01

Outputting figure to mutsig2_images.part000000000079/HIST1H2BD.2_385_10000_0.3102_0.7334_0.7068.png
                gene_name: HIST1H2BD
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 68 percent done.
HIST1H2BM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.138054e-02	ci left: 2.233609e-01	ci right 2.399957e-01	k: 2316	n:10000
Cons ci ratio: 8.449635e-02	ci left: 1.695643e-01	ci right 1.846243e-01	k: 1770	n:10000
KS ci ratio: 5.432516e-02	ci left: 3.329974e-01	ci right 3.516945e-01	k: 3423	n:10000
HIST1H2BM   10000 perm   1 sec   (6949 perm/sec)   p_kst 3.423000e-01   p_cons 1.770000e-01   p_joint 2.316000e-01

Outputting figure to mutsig2_images.part000000000079/HIST1H2BM.2_385_10000_0.3423_0.177_0.2316.png
                gene_name: HIST1H2BM
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 71 percent done.
HIST1H4E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.631022e-02	ci left: 6.802263e-01	ci right 6.984633e-01	k: 6894	n:10000
Cons ci ratio: 7.767639e-03	ci left: 9.583798e-01	ci right 9.659480e-01	k: 9623	n:10000
KS ci ratio: 2.908557e-02	ci left: 6.354296e-01	ci right 6.542860e-01	k: 6449	n:10000
HIST1H4E   10000 perm   1 sec   (6999 perm/sec)   p_kst 6.449000e-01   p_cons 9.623000e-01   p_joint 6.894000e-01

Outputting figure to mutsig2_images.part000000000079/HIST1H4E.2_316_10000_0.6449_0.9623_0.6894.png
                gene_name: HIST1H4E
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 74 percent done.
HIST3H3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.473093e-02	ci left: 8.696873e-01	ci right 8.826927e-01	k: 8763	n:10000
Cons ci ratio: 3.841808e-02	ci left: 5.001504e-01	ci right 5.198437e-01	k: 5100	n:10000
KS ci ratio: 2.560606e-02	ci left: 6.918185e-01	ci right 7.098644e-01	k: 7009	n:10000
HIST3H3   10000 perm   2 sec   (6260 perm/sec)   p_kst 7.009000e-01   p_cons 5.100000e-01   p_joint 8.763000e-01

Outputting figure to mutsig2_images.part000000000079/HIST3H3.2_415_10000_0.7009_0.51_0.8763.png
                gene_name: HIST3H3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 76 percent done.
HLA-C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.460375e-02	ci left: 3.307132e-01	ci right 3.493801e-01	k: 3400	n:10000
Cons ci ratio: 4.426074e-02	ci left: 4.297410e-01	ci right 4.492943e-01	k: 4395	n:10000
KS ci ratio: 1.404114e-01	ci left: 6.720239e-02	ci right 7.744844e-02	k: 722	n:10000
HLA-C   10000 perm   2 sec   (6246 perm/sec)   p_kst 7.220000e-02   p_cons 4.395000e-01   p_joint 3.400000e-01

Joint ci ratio: 1.304872e-02	ci left: 8.131882e-01	ci right 8.239190e-01	k: 16372	n:20000
Cons ci ratio: 3.291351e-02	ci left: 4.080594e-01	ci right 4.217654e-01	k: 8298	n:20000
KS ci ratio: 9.765953e-02	ci left: 7.089790e-02	ci right 7.822636e-02	k: 1490	n:20000
HLA-C   20000 perm   4 sec   (5411 perm/sec)   p_kst 7.450000e-02   p_cons 4.149000e-01   p_joint 8.186000e-01

Outputting figure to mutsig2_images.part000000000079/HLA-C.2_1133_20000_0.0745_0.4149_0.8186.png
                gene_name: HLA-C
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 79 percent done.
HLA-DMA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.644158e-01	ci left: 3.455366e-03	ci right 6.245157e-03	k: 47	n:10000
Cons ci ratio: 1.966875e-01	ci left: 3.443296e-02	ci right 4.203907e-02	k: 381	n:10000
KS ci ratio: 1.922817e-01	ci left: 3.605305e-02	ci right 4.381788e-02	k: 398	n:10000
HLA-DMA   10000 perm   1 sec   (6933 perm/sec)   p_kst 3.980000e-02   p_cons 3.810000e-02   p_joint 4.700000e-03

Joint ci ratio: 4.217842e-01	ci left: 3.396118e-03	ci right 5.252548e-03	k: 85	n:20000
Cons ci ratio: 1.400379e-01	ci left: 3.505436e-02	ci right 4.038113e-02	k: 753	n:20000
KS ci ratio: 1.370436e-01	ci left: 3.660089e-02	ci right 4.203409e-02	k: 785	n:20000
HLA-DMA   20000 perm   3 sec   (6099 perm/sec)   p_kst 3.925000e-02   p_cons 3.765000e-02   p_joint 4.250000e-03

Joint ci ratio: 3.366144e-01	ci left: 3.743736e-03	ci right 5.287973e-03	k: 134	n:30000
Cons ci ratio: 1.116994e-01	ci left: 3.722660e-02	ci right 4.166316e-02	k: 1182	n:30000
KS ci ratio: 1.128463e-01	ci left: 3.648066e-02	ci right 4.087593e-02	k: 1159	n:30000
HLA-DMA   30000 perm   5 sec   (5705 perm/sec)   p_kst 3.863333e-02   p_cons 3.940000e-02   p_joint 4.466667e-03

Joint ci ratio: 2.931583e-01	ci left: 3.798247e-03	ci right 5.125276e-03	k: 177	n:40000
Cons ci ratio: 9.739023e-02	ci left: 3.702618e-02	ci right 4.084113e-02	k: 1556	n:40000
KS ci ratio: 9.804732e-02	ci left: 3.653794e-02	ci right 4.032944e-02	k: 1536	n:40000
HLA-DMA   40000 perm   7 sec   (5429 perm/sec)   p_kst 3.840000e-02   p_cons 3.890000e-02   p_joint 4.425000e-03

Joint ci ratio: 2.625059e-01	ci left: 3.857478e-03	ci right 5.041191e-03	k: 221	n:50000
Cons ci ratio: 8.676714e-02	ci left: 3.751573e-02	ci right 4.093804e-02	k: 1960	n:50000
KS ci ratio: 8.756022e-02	ci left: 3.684999e-02	ci right 4.024386e-02	k: 1926	n:50000
HLA-DMA   50000 perm   10 sec   (5245 perm/sec)   p_kst 3.852000e-02   p_cons 3.920000e-02   p_joint 4.420000e-03

Joint ci ratio: 2.425788e-01	ci left: 3.807855e-03	ci right 4.874298e-03	k: 259	n:60000
Cons ci ratio: 7.882805e-02	ci left: 3.802083e-02	ci right 4.115724e-02	k: 2374	n:60000
KS ci ratio: 8.051983e-02	ci left: 3.646784e-02	ci right 3.954372e-02	k: 2279	n:60000
HLA-DMA   60000 perm   12 sec   (4974 perm/sec)   p_kst 3.798333e-02   p_cons 3.956667e-02   p_joint 4.316667e-03

Joint ci ratio: 2.269768e-01	ci left: 3.761374e-03	ci right 4.737567e-03	k: 296	n:70000
Cons ci ratio: 7.289625e-02	ci left: 3.822343e-02	ci right 4.112918e-02	k: 2776	n:70000
KS ci ratio: 7.500244e-02	ci left: 3.614675e-02	ci right 3.897747e-02	k: 2628	n:70000
HLA-DMA   70000 perm   14 sec   (4893 perm/sec)   p_kst 3.754286e-02   p_cons 3.965714e-02   p_joint 4.228571e-03

Joint ci ratio: 2.112046e-01	ci left: 3.834700e-03	ci right 4.751822e-03	k: 342	n:80000
Cons ci ratio: 6.826348e-02	ci left: 3.823450e-02	ci right 4.094902e-02	k: 3166	n:80000
KS ci ratio: 7.008056e-02	ci left: 3.631694e-02	ci right 3.896673e-02	k: 3010	n:80000
HLA-DMA   80000 perm   17 sec   (4776 perm/sec)   p_kst 3.762500e-02   p_cons 3.957500e-02   p_joint 4.275000e-03

Joint ci ratio: 1.993528e-01	ci left: 3.851319e-03	ci right 4.714446e-03	k: 384	n:90000
Cons ci ratio: 6.439594e-02	ci left: 3.826957e-02	ci right 4.082688e-02	k: 3558	n:90000
KS ci ratio: 6.619837e-02	ci left: 3.625723e-02	ci right 3.875047e-02	k: 3374	n:90000
HLA-DMA   90000 perm   19 sec   (4706 perm/sec)   p_kst 3.748889e-02   p_cons 3.953333e-02   p_joint 4.266667e-03

Joint ci ratio: 1.895187e-01	ci left: 3.856238e-03	ci right 4.672927e-03	k: 425	n:100000
Cons ci ratio: 6.093468e-02	ci left: 3.852776e-02	ci right 4.095903e-02	k: 3973	n:100000
KS ci ratio: 6.270583e-02	ci left: 3.642941e-02	ci right 3.879751e-02	k: 3760	n:100000
HLA-DMA   100000 perm   22 sec   (4631 perm/sec)   p_kst 3.760000e-02   p_cons 3.973000e-02   p_joint 4.250000e-03

Joint ci ratio: 1.800443e-01	ci left: 3.904528e-03	ci right 4.685600e-03	k: 471	n:110000
Cons ci ratio: 5.819191e-02	ci left: 3.846411e-02	ci right 4.077842e-02	k: 4357	n:110000
KS ci ratio: 5.981098e-02	ci left: 3.645663e-02	ci right 3.871329e-02	k: 4133	n:110000
HLA-DMA   110000 perm   24 sec   (4557 perm/sec)   p_kst 3.757273e-02   p_cons 3.960909e-02   p_joint 4.281818e-03

Joint ci ratio: 1.744167e-01	ci left: 3.826011e-03	ci right 4.564932e-03	k: 502	n:120000
Cons ci ratio: 5.571564e-02	ci left: 3.851180e-02	ci right 4.072719e-02	k: 4753	n:120000
KS ci ratio: 5.732955e-02	ci left: 3.642389e-02	ci right 3.858187e-02	k: 4499	n:120000
HLA-DMA   120000 perm   27 sec   (4478 perm/sec)   p_kst 3.749167e-02   p_cons 3.960833e-02   p_joint 4.183333e-03

Joint ci ratio: 1.689682e-01	ci left: 3.774633e-03	ci right 4.478538e-03	k: 535	n:130000
Cons ci ratio: 5.365020e-02	ci left: 3.838687e-02	ci right 4.051066e-02	k: 5127	n:130000
KS ci ratio: 5.515692e-02	ci left: 3.636747e-02	ci right 3.843784e-02	k: 4861	n:130000
HLA-DMA   130000 perm   30 sec   (4403 perm/sec)   p_kst 3.739231e-02   p_cons 3.943846e-02   p_joint 4.115385e-03

Joint ci ratio: 1.627130e-01	ci left: 3.792571e-03	ci right 4.471077e-03	k: 577	n:140000
Cons ci ratio: 5.190181e-02	ci left: 3.813297e-02	ci right 4.017189e-02	k: 5480	n:140000
KS ci ratio: 5.316637e-02	ci left: 3.638391e-02	ci right 3.837816e-02	k: 5232	n:140000
HLA-DMA   140000 perm   32 sec   (4337 perm/sec)   p_kst 3.737143e-02   p_cons 3.914286e-02   p_joint 4.121429e-03

Joint ci ratio: 1.563469e-01	ci left: 3.846969e-03	ci right 4.505757e-03	k: 625	n:150000
Cons ci ratio: 5.004224e-02	ci left: 3.831568e-02	ci right 4.028885e-02	k: 5894	n:150000
KS ci ratio: 5.129610e-02	ci left: 3.651126e-02	ci right 3.844000e-02	k: 5620	n:150000
HLA-DMA   150000 perm   35 sec   (4235 perm/sec)   p_kst 3.746667e-02   p_cons 3.929333e-02   p_joint 4.166667e-03

Joint ci ratio: 1.507863e-01	ci left: 3.889004e-03	ci right 4.529166e-03	k: 672	n:160000
Cons ci ratio: 4.838915e-02	ci left: 3.844580e-02	ci right 4.035844e-02	k: 6303	n:160000
KS ci ratio: 4.949909e-02	ci left: 3.678433e-02	ci right 3.865747e-02	k: 6034	n:160000
HLA-DMA   160000 perm   38 sec   (4175 perm/sec)   p_kst 3.771250e-02   p_cons 3.939375e-02   p_joint 4.200000e-03

Joint ci ratio: 1.462906e-01	ci left: 3.898118e-03	ci right 4.518977e-03	k: 714	n:170000
Cons ci ratio: 4.701018e-02	ci left: 3.836963e-02	ci right 4.022260e-02	k: 6679	n:170000
KS ci ratio: 4.794038e-02	ci left: 3.693326e-02	ci right 3.875313e-02	k: 6432	n:170000
HLA-DMA   170000 perm   41 sec   (4117 perm/sec)   p_kst 3.783529e-02   p_cons 3.928824e-02   p_joint 4.200000e-03

Joint ci ratio: 1.406891e-01	ci left: 3.992227e-03	ci right 4.601686e-03	k: 772	n:180000
Cons ci ratio: 4.556826e-02	ci left: 3.858833e-02	ci right 4.039320e-02	k: 7107	n:180000
KS ci ratio: 4.647426e-02	ci left: 3.713788e-02	ci right 3.891037e-02	k: 6843	n:180000
HLA-DMA   180000 perm   44 sec   (4060 perm/sec)   p_kst 3.801667e-02   p_cons 3.948333e-02   p_joint 4.288889e-03

Joint ci ratio: 1.365127e-01	ci left: 4.025986e-03	ci right 4.620872e-03	k: 820	n:190000
Cons ci ratio: 4.434332e-02	ci left: 3.862857e-02	ci right 4.038551e-02	k: 7505	n:190000
KS ci ratio: 4.516725e-02	ci left: 3.726966e-02	ci right 3.899710e-02	k: 7244	n:190000
HLA-DMA   190000 perm   47 sec   (4003 perm/sec)   p_kst 3.812632e-02   p_cons 3.950000e-02   p_joint 4.315789e-03

Joint ci ratio: 1.326874e-01	ci left: 4.056610e-03	ci right 4.637900e-03	k: 868	n:200000
Cons ci ratio: 4.310437e-02	ci left: 3.885340e-02	ci right 4.056997e-02	k: 7941	n:200000
KS ci ratio: 4.406360e-02	ci left: 3.722563e-02	ci right 3.890780e-02	k: 7612	n:200000
HLA-DMA   200000 perm   51 sec   (3950 perm/sec)   p_kst 3.806000e-02   p_cons 3.970500e-02   p_joint 4.340000e-03

Joint ci ratio: 1.292374e-01	ci left: 4.079919e-03	ci right 4.648182e-03	k: 915	n:210000
Cons ci ratio: 4.205533e-02	ci left: 3.889245e-02	ci right 4.056791e-02	k: 8342	n:210000
KS ci ratio: 4.294210e-02	ci left: 3.734649e-02	ci right 3.899010e-02	k: 8014	n:210000
HLA-DMA   210000 perm   54 sec   (3864 perm/sec)   p_kst 3.816190e-02   p_cons 3.972381e-02   p_joint 4.357143e-03

Joint ci ratio: 1.263069e-01	ci left: 4.083676e-03	ci right 4.638599e-03	k: 958	n:220000
Cons ci ratio: 4.104024e-02	ci left: 3.900042e-02	ci right 4.063901e-02	k: 8759	n:220000
KS ci ratio: 4.192280e-02	ci left: 3.742085e-02	ci right 3.902770e-02	k: 8408	n:220000
HLA-DMA   220000 perm   58 sec   (3804 perm/sec)   p_kst 3.821818e-02   p_cons 3.981364e-02   p_joint 4.354545e-03

Joint ci ratio: 1.238157e-01	ci left: 4.070383e-03	ci right 4.611790e-03	k: 997	n:230000
Cons ci ratio: 4.009526e-02	ci left: 3.909944e-02	ci right 4.070349e-02	k: 9176	n:230000
KS ci ratio: 4.099216e-02	ci left: 3.745474e-02	ci right 3.902649e-02	k: 8794	n:230000
HLA-DMA   230000 perm   61 sec   (3755 perm/sec)   p_kst 3.823478e-02   p_cons 3.989565e-02   p_joint 4.334783e-03

Joint ci ratio: 1.207087e-01	ci left: 4.110830e-03	ci right 4.642916e-03	k: 1049	n:240000
Cons ci ratio: 3.925106e-02	ci left: 3.911630e-02	ci right 4.068650e-02	k: 9575	n:240000
KS ci ratio: 4.003481e-02	ci left: 3.764296e-02	ci right 3.918488e-02	k: 9218	n:240000
HLA-DMA   240000 perm   65 sec   (3704 perm/sec)   p_kst 3.840833e-02   p_cons 3.989583e-02   p_joint 4.370833e-03

Joint ci ratio: 1.185286e-01	ci left: 4.097727e-03	ci right 4.617867e-03	k: 1088	n:250000
Cons ci ratio: 3.845803e-02	ci left: 3.913215e-02	ci right 4.067054e-02	k: 9974	n:250000
KS ci ratio: 3.931784e-02	ci left: 3.748765e-02	ci right 3.899508e-02	k: 9559	n:250000
HLA-DMA   250000 perm   68 sec   (3655 perm/sec)   p_kst 3.823600e-02   p_cons 3.989600e-02   p_joint 4.352000e-03

Joint ci ratio: 1.164108e-01	ci left: 4.089447e-03	ci right 4.598623e-03	k: 1128	n:260000
Cons ci ratio: 3.769418e-02	ci left: 3.918137e-02	ci right 4.069044e-02	k: 10382	n:260000
KS ci ratio: 3.853901e-02	ci left: 3.753123e-02	ci right 3.900985e-02	k: 9949	n:260000
HLA-DMA   260000 perm   72 sec   (3609 perm/sec)   p_kst 3.826538e-02   p_cons 3.993077e-02   p_joint 4.338462e-03

Joint ci ratio: 1.145503e-01	ci left: 4.071062e-03	ci right 4.569300e-03	k: 1165	n:270000
Cons ci ratio: 3.700090e-02	ci left: 3.917217e-02	ci right 4.065254e-02	k: 10775	n:270000
KS ci ratio: 3.785230e-02	ci left: 3.748011e-02	ci right 3.892983e-02	k: 10314	n:270000
HLA-DMA   270000 perm   76 sec   (3559 perm/sec)   p_kst 3.820000e-02   p_cons 3.990741e-02   p_joint 4.314815e-03

Joint ci ratio: 1.122155e-01	ci left: 4.095707e-03	ci right 4.586068e-03	k: 1214	n:280000
Cons ci ratio: 3.630898e-02	ci left: 3.923821e-02	ci right 4.069276e-02	k: 11189	n:280000
KS ci ratio: 3.710542e-02	ci left: 3.762045e-02	ci right 3.904627e-02	k: 10732	n:280000
HLA-DMA   280000 perm   80 sec   (3517 perm/sec)   p_kst 3.832857e-02   p_cons 3.996071e-02   p_joint 4.335714e-03

Joint ci ratio: 1.103692e-01	ci left: 4.091919e-03	ci right 4.573242e-03	k: 1255	n:290000
Cons ci ratio: 3.569615e-02	ci left: 3.921104e-02	ci right 4.063955e-02	k: 11577	n:290000
KS ci ratio: 3.646061e-02	ci left: 3.763173e-02	ci right 3.903268e-02	k: 11115	n:290000
HLA-DMA   290000 perm   84 sec   (3473 perm/sec)   p_kst 3.832759e-02   p_cons 3.992069e-02   p_joint 4.327586e-03

Joint ci ratio: 1.083180e-01	ci left: 4.111148e-03	ci right 4.585172e-03	k: 1303	n:300000
Cons ci ratio: 3.505389e-02	ci left: 3.931478e-02	ci right 4.072079e-02	k: 12004	n:300000
KS ci ratio: 3.580298e-02	ci left: 3.773500e-02	ci right 3.911393e-02	k: 11526	n:300000
HLA-DMA   300000 perm   87 sec   (3430 perm/sec)   p_kst 3.842000e-02   p_cons 4.001333e-02   p_joint 4.343333e-03

Joint ci ratio: 1.070552e-01	ci left: 4.075833e-03	ci right 4.539960e-03	k: 1334	n:310000
Cons ci ratio: 3.451891e-02	ci left: 3.924889e-02	ci right 4.063069e-02	k: 12380	n:310000
KS ci ratio: 3.523807e-02	ci left: 3.771027e-02	ci right 3.906612e-02	k: 11899	n:310000
HLA-DMA   310000 perm   92 sec   (3388 perm/sec)   p_kst 3.838387e-02   p_cons 3.993548e-02   p_joint 4.303226e-03

Joint ci ratio: 1.055256e-01	ci left: 4.067097e-03	ci right 4.523202e-03	k: 1373	n:320000
Cons ci ratio: 3.392469e-02	ci left: 3.937325e-02	ci right 4.073510e-02	k: 12816	n:320000
KS ci ratio: 3.470643e-02	ci left: 3.767175e-02	ci right 3.900537e-02	k: 12267	n:320000
HLA-DMA   320000 perm   96 sec   (3345 perm/sec)   p_kst 3.833437e-02   p_cons 4.005000e-02   p_joint 4.290625e-03

Joint ci ratio: 1.038018e-01	ci left: 4.079598e-03	ci right 4.529175e-03	k: 1419	n:330000
Cons ci ratio: 3.345359e-02	ci left: 3.927683e-02	ci right 4.061612e-02	k: 13181	n:330000
KS ci ratio: 3.415460e-02	ci left: 3.772889e-02	ci right 3.904287e-02	k: 12666	n:330000
HLA-DMA   330000 perm   101 sec   (3283 perm/sec)   p_kst 3.838182e-02   p_cons 3.994242e-02   p_joint 4.300000e-03

Joint ci ratio: 1.023704e-01	ci left: 4.074223e-03	ci right 4.516644e-03	k: 1459	n:340000
Cons ci ratio: 3.295853e-02	ci left: 3.928541e-02	ci right 4.060479e-02	k: 13580	n:340000
KS ci ratio: 3.369405e-02	ci left: 3.763986e-02	ci right 3.893273e-02	k: 13016	n:340000
HLA-DMA   340000 perm   105 sec   (3243 perm/sec)   p_kst 3.828235e-02   p_cons 3.994118e-02   p_joint 4.291176e-03

Joint ci ratio: 1.010644e-01	ci left: 4.063625e-03	ci right 4.498931e-03	k: 1497	n:350000
Cons ci ratio: 3.247877e-02	ci left: 3.930782e-02	ci right 4.060838e-02	k: 13984	n:350000
KS ci ratio: 3.318071e-02	ci left: 3.771193e-02	ci right 3.898716e-02	k: 13421	n:350000
HLA-DMA   350000 perm   109 sec   (3203 perm/sec)   p_kst 3.834571e-02   p_cons 3.995429e-02   p_joint 4.277143e-03

Joint ci ratio: 9.983973e-02	ci left: 4.050941e-03	ci right 4.479322e-03	k: 1534	n:360000
Cons ci ratio: 3.204838e-02	ci left: 3.926021e-02	ci right 4.054166e-02	k: 14363	n:360000
KS ci ratio: 3.271476e-02	ci left: 3.772501e-02	ci right 3.898243e-02	k: 13806	n:360000
HLA-DMA   360000 perm   114 sec   (3163 perm/sec)   p_kst 3.835000e-02   p_cons 3.989722e-02   p_joint 4.261111e-03

Outputting figure to mutsig2_images.part000000000079/HLA-DMA.2_806_360000_0.03835_0.039897_0.0042611.png
                gene_name: HLA-DMA
               theta_stop: 0.100 
                    nperm: 360000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.0043 
     ci_joint_bounds_left: 0.0041 
    ci_joint_bounds_right: 0.0045 

Current progress: 82 percent done.
HLA-DPB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.868840e-02	ci left: 2.993551e-01	ci right 3.175566e-01	k: 3084	n:10000
Cons ci ratio: 9.390706e-03	ci left: 9.411809e-01	ci right 9.501572e-01	k: 9458	n:10000
KS ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
HLA-DPB1   10000 perm   1 sec   (6750 perm/sec)   p_kst 4.320000e-02   p_cons 9.458000e-01   p_joint 3.084000e-01

Joint ci ratio: 1.759420e-02	ci left: 7.064738e-01	ci right 7.190643e-01	k: 14256	n:20000
Cons ci ratio: 6.870783e-03	ci left: 9.388247e-01	ci right 9.453461e-01	k: 18843	n:20000
KS ci ratio: 1.315637e-01	ci left: 3.969753e-02	ci right 4.533646e-02	k: 849	n:20000
HLA-DPB1   20000 perm   3 sec   (5954 perm/sec)   p_kst 4.245000e-02   p_cons 9.421500e-01   p_joint 7.128000e-01

Joint ci ratio: 1.334651e-02	ci left: 7.369754e-01	ci right 7.469110e-01	k: 22259	n:30000
Cons ci ratio: 5.647825e-03	ci left: 9.386825e-01	ci right 9.440316e-01	k: 28242	n:30000
KS ci ratio: 1.076870e-01	ci left: 4.001771e-02	ci right 4.460480e-02	k: 1268	n:30000
HLA-DPB1   30000 perm   5 sec   (5660 perm/sec)   p_kst 4.226667e-02   p_cons 9.414000e-01   p_joint 7.419667e-01

Joint ci ratio: 1.368607e-02	ci left: 6.676001e-01	ci right 6.768249e-01	k: 26889	n:40000
Cons ci ratio: 4.882027e-03	ci left: 9.392572e-01	ci right 9.438784e-01	k: 37664	n:40000
KS ci ratio: 9.346211e-02	ci left: 4.015283e-02	ci right 4.411399e-02	k: 1684	n:40000
HLA-DPB1   40000 perm   7 sec   (5393 perm/sec)   p_kst 4.210000e-02   p_cons 9.416000e-01   p_joint 6.722250e-01

Outputting figure to mutsig2_images.part000000000079/HLA-DPB1.2_797_40000_0.0421_0.9416_0.67222.png
                gene_name: HLA-DPB1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 85 percent done.
HLA-DRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.343441e-02	ci left: 7.279497e-01	ci right 7.453122e-01	k: 7367	n:10000
KS ci ratio: 6.383989e-02	ci left: 2.649783e-01	ci right 2.825537e-01	k: 2737	n:10000
HLA-DRB1   10000 perm   2 sec   (6457 perm/sec)   p_kst 2.737000e-01   p_cons 7.367000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HLA-DRB1.2_825_10000_0.2737_0.7367_1.png
                gene_name: HLA-DRB1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
HLA-F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.108667e-02	ci left: 9.206943e-01	ci right 9.310560e-01	k: 9260	n:10000
KS ci ratio: 2.548400e-02	ci left: 6.938352e-01	ci right 7.118465e-01	k: 7029	n:10000
HLA-F   10000 perm   2 sec   (5837 perm/sec)   p_kst 7.029000e-01   p_cons 9.260000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HLA-F.2_1366_10000_0.7029_0.926_1.png
                gene_name: HLA-F
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
HLA-G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.476548e-02	ci left: 1.391331e-01	ci right 1.530738e-01	k: 1460	n:10000
Cons ci ratio: 1.652095e-02	ci left: 8.420346e-01	ci right 8.561614e-01	k: 8492	n:10000
KS ci ratio: 2.723101e-01	ci left: 1.753307e-02	ci right 2.315124e-02	k: 202	n:10000
HLA-G   10000 perm   1 sec   (6795 perm/sec)   p_kst 2.020000e-02   p_cons 8.492000e-01   p_joint 1.460000e-01

Joint ci ratio: 6.578898e-02	ci left: 1.457679e-01	ci right 1.557339e-01	k: 3014	n:20000
Cons ci ratio: 1.165399e-02	ci left: 8.447728e-01	ci right 8.547253e-01	k: 16996	n:20000
KS ci ratio: 1.908840e-01	ci left: 1.867638e-02	ci right 2.266469e-02	k: 412	n:20000
HLA-G   20000 perm   3 sec   (5873 perm/sec)   p_kst 2.060000e-02   p_cons 8.498000e-01   p_joint 1.507000e-01

Joint ci ratio: 5.372027e-02	ci left: 1.466690e-01	ci right 1.547988e-01	k: 4521	n:30000
Cons ci ratio: 9.522698e-03	ci left: 8.455045e-01	ci right 8.536277e-01	k: 25488	n:30000
KS ci ratio: 1.534099e-01	ci left: 1.966392e-02	ci right 2.296302e-02	k: 638	n:30000
HLA-G   30000 perm   6 sec   (5448 perm/sec)   p_kst 2.126667e-02   p_cons 8.496000e-01   p_joint 1.507000e-01

Joint ci ratio: 4.637992e-02	ci left: 1.479993e-01	ci right 1.550514e-01	k: 6060	n:40000
Cons ci ratio: 8.269386e-03	ci left: 8.453524e-01	ci right 8.523969e-01	k: 33956	n:40000
KS ci ratio: 1.318334e-01	ci left: 2.019768e-02	ci right 2.307236e-02	k: 864	n:40000
HLA-G   40000 perm   8 sec   (5312 perm/sec)   p_kst 2.160000e-02   p_cons 8.489000e-01   p_joint 1.515000e-01

Joint ci ratio: 4.170188e-02	ci left: 1.470392e-01	ci right 1.533215e-01	k: 7508	n:50000
Cons ci ratio: 7.405542e-03	ci left: 8.454078e-01	ci right 8.517117e-01	k: 42429	n:50000
KS ci ratio: 1.179296e-01	ci left: 2.034360e-02	ci right 2.291236e-02	k: 1080	n:50000
HLA-G   50000 perm   10 sec   (5194 perm/sec)   p_kst 2.160000e-02   p_cons 8.485800e-01   p_joint 1.501600e-01

Joint ci ratio: 2.945320e-02	ci left: 2.245650e-01	ci right 2.312947e-01	k: 13675	n:60000
Cons ci ratio: 6.713655e-03	ci left: 8.474704e-01	ci right 8.531957e-01	k: 51021	n:60000
KS ci ratio: 1.069490e-01	ci left: 2.072753e-02	ci right 2.308570e-02	k: 1313	n:60000
HLA-G   60000 perm   12 sec   (5080 perm/sec)   p_kst 2.188333e-02   p_cons 8.503500e-01   p_joint 2.279167e-01

Joint ci ratio: 2.629657e-02	ci left: 2.377784e-01	ci right 2.441288e-01	k: 16866	n:70000
Cons ci ratio: 6.213001e-03	ci left: 8.477936e-01	ci right 8.530916e-01	k: 59532	n:70000
KS ci ratio: 9.911481e-02	ci left: 2.077274e-02	ci right 2.295286e-02	k: 1529	n:70000
HLA-G   70000 perm   14 sec   (4982 perm/sec)   p_kst 2.184286e-02   p_cons 8.504571e-01   p_joint 2.409429e-01

Outputting figure to mutsig2_images.part000000000079/HLA-G.2_1041_70000_0.021843_0.85046_0.24094.png
                gene_name: HLA-G
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.24 

Current progress: 94 percent done.
HLF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.465171e-02	ci left: 1.394271e-01	ci right 1.533796e-01	k: 1463	n:10000
Cons ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
KS ci ratio: 2.309509e-01	ci left: 2.476030e-02	ci right 3.131851e-02	k: 279	n:10000
HLF   10000 perm   1 sec   (6709 perm/sec)   p_kst 2.790000e-02   p_cons 1.086000e-01   p_joint 1.463000e-01

Joint ci ratio: 9.225269e-02	ci left: 7.896763e-02	ci right 8.665417e-02	k: 1655	n:20000
Cons ci ratio: 7.926844e-02	ci left: 1.046148e-01	ci right 1.132993e-01	k: 2178	n:20000
KS ci ratio: 1.627139e-01	ci left: 2.590150e-02	ci right 3.053703e-02	k: 563	n:20000
HLF   20000 perm   4 sec   (5405 perm/sec)   p_kst 2.815000e-02   p_cons 1.089000e-01   p_joint 8.275000e-02

Joint ci ratio: 1.129476e-01	ci left: 3.641581e-02	ci right 4.080746e-02	k: 1157	n:30000
Cons ci ratio: 6.500776e-02	ci left: 1.045749e-01	ci right 1.116345e-01	k: 3242	n:30000
KS ci ratio: 1.345851e-01	ci left: 2.564642e-02	ci right 2.937917e-02	k: 824	n:30000
HLF   30000 perm   6 sec   (5252 perm/sec)   p_kst 2.746667e-02   p_cons 1.080667e-01   p_joint 3.856667e-02

Joint ci ratio: 9.818026e-02	ci left: 3.644030e-02	ci right 4.022710e-02	k: 1532	n:40000
Cons ci ratio: 5.618207e-02	ci left: 1.054435e-01	ci right 1.115635e-01	k: 4339	n:40000
KS ci ratio: 1.168279e-01	ci left: 2.577352e-02	ci right 2.899558e-02	k: 1094	n:40000
HLF   40000 perm   8 sec   (5066 perm/sec)   p_kst 2.735000e-02   p_cons 1.084750e-01   p_joint 3.830000e-02

Joint ci ratio: 8.789283e-02	ci left: 3.657590e-02	ci right 3.995798e-02	k: 1912	n:50000
Cons ci ratio: 5.016275e-02	ci left: 1.061032e-01	ci right 1.115823e-01	k: 5441	n:50000
KS ci ratio: 1.050380e-01	ci left: 2.567477e-02	ci right 2.854049e-02	k: 1354	n:50000
HLF   50000 perm   10 sec   (4911 perm/sec)   p_kst 2.708000e-02   p_cons 1.088200e-01   p_joint 3.824000e-02

Joint ci ratio: 8.002854e-02	ci left: 3.690915e-02	ci right 4.000237e-02	k: 2306	n:60000
Cons ci ratio: 4.575445e-02	ci left: 1.065005e-01	ci right 1.115040e-01	k: 6539	n:60000
KS ci ratio: 9.576528e-02	ci left: 2.586417e-02	ci right 2.848184e-02	k: 1629	n:60000
HLF   60000 perm   12 sec   (4818 perm/sec)   p_kst 2.715000e-02   p_cons 1.089833e-01   p_joint 3.843333e-02

Outputting figure to mutsig2_images.part000000000079/HLF.2_904_60000_0.02715_0.10898_0.038433.png
                gene_name: HLF
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.040 

Current progress: 97 percent done.
HMBS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.340334e-02	ci left: 2.136891e-01	ci right 2.300732e-01	k: 2218	n:10000
KS ci ratio: 9.005031e-02	ci left: 1.520792e-01	ci right 1.665198e-01	k: 1592	n:10000
HMBS   10000 perm   2 sec   (5965 perm/sec)   p_kst 1.592000e-01   p_cons 2.218000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000079/HMBS.2_1142_10000_0.1592_0.2218_1.png
                gene_name: HMBS
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000079
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 79 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9893967: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000080> was used as the working directory.
Started at Sat Oct  6 00:12:36 2012
Results reported at Sat Oct  6 00:21:23 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000080.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000080.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 80  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000080.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    502.87 sec.
    Max Memory :      3555 MB
    Max Swap   :      5886 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
80
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 80
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 80: processing genes 7123 - 7212
Calculating significance of each gene.
Using projection method.
7123	HMGB2	5.948354e-01
7124	HMGB3	3.705617e-01
7125	HMGB4	6.643503e-01
7126	HMGCL	4.423164e-01
7127	HMGCLL1	4.053369e-01
7128	HMGCR	7.614530e-01
7129	HMGCS1	8.117176e-01
7130	HMGCS2	9.335858e-01
7131	HMGN1	1
7132	HMGN2	1
7133	HMGN3	1
7134	HMGN4	1
In gene HMGN5 the following bins exceed PROBCAP:
    COAD-AA-3715	categ 6	N = 363     n = 1	mu =   6.38e-06
    COAD-AA-3984	categ 6	N = 363     n = 1	mu =   1.17e-05
7135	HMGN5	1.829541e-02
7136	HMGXB4	3.824612e-02
7137	HMHA1	1
7138	HMHB1	1
7139	HMMR	9.702258e-02
7140	HMOX1	4.885784e-01
7141	HMOX2	6.552602e-01
7142	HMP19	5.697053e-01
7143	HMSD	1.104406e-01
7144	HMX2	1
7145	HMX3	1
7146	HN1	1
7147	HN1L	1
7148	HNF1A	7.364663e-01
7149	HNF1B	7.273085e-01
7150	HNF4A	2.139024e-01
7151	HNF4G	7.604759e-01
7152	HNMT	5.985186e-02
7153	HNRNPA0	1
7154	HNRNPA1	3.034771e-01
7155	HNRNPA1L2	7.029136e-01
7156	HNRNPA2B1	3.805952e-01
In gene HNRNPA3 the following bins exceed PROBCAP:
    READ-AG-4015	categ 6	N = 1101    n = 1	mu =   3.29e-07
7157	HNRNPA3	9.851792e-03
7158	HNRNPAB	2.100342e-01
7159	HNRNPC	1
7160	HNRNPCL1	4.719056e-01
7161	HNRNPD	3.640030e-01
7162	HNRNPF	2.619644e-01
7163	HNRNPH1	7.249865e-01
7164	HNRNPH2	9.081711e-01
7165	HNRNPH3	5.954651e-01
7166	HNRNPK	3.257139e-01
7167	HNRNPL	5.462683e-02
7168	HNRNPM	8.317588e-01
7169	HNRNPR	1
7170	HNRNPU	9.618139e-01
7171	HNRNPUL1	8.731323e-02
7172	HNRNPUL2	7.720483e-01
7173	HNRPDL	1
7174	HNRPLL	1
7175	HOMER1	2.589462e-01
7176	HOMER2	5.902871e-01
7177	HOMER3	4.664537e-01
7178	HOMEZ	4.319163e-01
7179	HOOK1	9.388249e-02
7180	HOOK2	9.906658e-01
7181	HOOK3	5.040442e-01
7182	HOPX	1
7183	HORMAD1	2.444739e-01
7184	HORMAD2	7.625346e-01
7185	HOXA1	4.236695e-01
7186	HOXA10	1
7187	HOXA11	3.555035e-01
7188	HOXA13	7.901194e-01
7189	HOXA2	6.410438e-01
7190	HOXA3	8.402975e-01
7191	HOXA4	9.592775e-02
7192	HOXA5	5.851557e-01
7193	HOXA6	1.567473e-01
7194	HOXA7	8.321122e-01
7195	HOXA9	1
7196	HOXB1	8.334478e-01
7197	HOXB13	1
7198	HOXB2	7.344625e-01
7199	HOXB3	9.142353e-01
7200	HOXB4	8.568965e-01
7201	HOXB5	1
7202	HOXB6	7.940231e-01
7203	HOXB7	4.865172e-01
7204	HOXB8	8.911008e-01
7205	HOXB9	5.945501e-01
7206	HOXC10	9.308651e-01
7207	HOXC11	6.963339e-01
7208	HOXC12	2.584254e-01
7209	HOXC13	2.566948e-01
7210	HOXC4	7.392305e-01
7211	HOXC5	7.599210e-01
7212	HOXC6	8.115148e-01
Done

Running MutSig 2:
Scatter job 80: processing genes 7123 - 7212
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HNRNPUL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.076335e-01	ci left: 1.107625e-01	ci right 1.234615e-01	k: 1170	n:10000
Cons ci ratio: 1.433170e-01	ci left: 6.459169e-02	ci right 7.466078e-02	k: 695	n:10000
KS ci ratio: 8.355196e-02	ci left: 1.728091e-01	ci right 1.879776e-01	k: 1803	n:10000
HNRNPUL1   10000 perm   2 sec   (5320 perm/sec)   p_kst 1.803000e-01   p_cons 6.950000e-02   p_joint 1.170000e-01

Joint ci ratio: 8.620424e-02	ci left: 8.964657e-02	ci right 9.777200e-02	k: 1873	n:20000
Cons ci ratio: 1.010697e-01	ci left: 6.640396e-02	ci right 7.352168e-02	k: 1398	n:20000
KS ci ratio: 5.951412e-02	ci left: 1.729185e-01	ci right 1.835752e-01	k: 3564	n:20000
HNRNPUL1   20000 perm   8 sec   (2651 perm/sec)   p_kst 1.782000e-01   p_cons 6.990000e-02   p_joint 9.365000e-02

Joint ci ratio: 6.695708e-02	ci left: 9.908979e-02	ci right 1.059874e-01	k: 3075	n:30000
Cons ci ratio: 8.249198e-02	ci left: 6.710517e-02	ci right 7.291177e-02	k: 2099	n:30000
KS ci ratio: 4.825052e-02	ci left: 1.759642e-01	ci right 1.846978e-01	k: 5409	n:30000
HNRNPUL1   30000 perm   10 sec   (2966 perm/sec)   p_kst 1.803000e-01   p_cons 6.996667e-02   p_joint 1.025000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPUL1.8_2631_30000_0.1803_0.069967_0.1025.png
                gene_name: HNRNPUL1
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.11 

Current progress: 2 percent done.
HMGXB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.333015e-02	ci left: 8.902613e-01	ci right 9.023067e-01	k: 8964	n:10000
Cons ci ratio: 2.997394e-02	ci left: 6.214554e-01	ci right 6.404682e-01	k: 6310	n:10000
KS ci ratio: 2.962739e-02	ci left: 6.268832e-01	ci right 6.458373e-01	k: 6364	n:10000
HMGXB4   10000 perm   2 sec   (5578 perm/sec)   p_kst 6.364000e-01   p_cons 6.310000e-01   p_joint 8.964000e-01

Outputting figure to mutsig2_images.part000000000080/HMGXB4.6_1846_10000_0.6364_0.631_0.8964.png
                gene_name: HMGXB4
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 5 percent done.
HMMR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.178264e-02	ci left: 9.116264e-01	ci right 9.225292e-01	k: 9172	n:10000
Cons ci ratio: 3.305359e-02	ci left: 5.746674e-01	ci right 5.940834e-01	k: 5844	n:10000
KS ci ratio: 1.105432e-02	ci left: 9.211069e-01	ci right 9.314431e-01	k: 9264	n:10000
HMMR   10000 perm   2 sec   (5787 perm/sec)   p_kst 9.264000e-01   p_cons 5.844000e-01   p_joint 9.172000e-01

Outputting figure to mutsig2_images.part000000000080/HMMR.6_2250_10000_0.9264_0.5844_0.9172.png
                gene_name: HMMR
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 8 percent done.
HNF4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.759331e-02	ci left: 3.944612e-01	ci right 4.137947e-01	k: 4041	n:10000
KS ci ratio: 1.425160e-02	ci left: 8.768454e-01	ci right 8.895304e-01	k: 8833	n:10000
HNF4A   10000 perm   2 sec   (5582 perm/sec)   p_kst 8.833000e-01   p_cons 4.041000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HNF4A.6_1643_10000_0.8833_0.4041_1.png
                gene_name: HNF4A
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
HNRNPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.247955e-01	ci left: 8.416945e-02	ci right 9.547082e-02	k: 897	n:10000
Cons ci ratio: 8.717051e-02	ci left: 1.608181e-01	ci right 1.755758e-01	k: 1681	n:10000
KS ci ratio: 1.245670e-01	ci left: 8.446093e-02	ci right 9.577916e-02	k: 900	n:10000
HNRNPL   10000 perm   2 sec   (5861 perm/sec)   p_kst 9.000000e-02   p_cons 1.681000e-01   p_joint 8.970000e-02

Joint ci ratio: 7.242749e-02	ci left: 1.231038e-01	ci right 1.324047e-01	k: 2554	n:20000
Cons ci ratio: 6.069853e-02	ci left: 1.672867e-01	ci right 1.778086e-01	k: 3450	n:20000
KS ci ratio: 8.411543e-02	ci left: 9.381504e-02	ci right 1.021023e-01	k: 1958	n:20000
HNRNPL   20000 perm   4 sec   (5259 perm/sec)   p_kst 9.790000e-02   p_cons 1.725000e-01   p_joint 1.277000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPL.6_1822_20000_0.0979_0.1725_0.1277.png
                gene_name: HNRNPL
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 12 percent done.
HNRNPA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.874557e-02	ci left: 8.061311e-01	ci right 8.214857e-01	k: 8139	n:10000
Cons ci ratio: 1.846048e-02	ci left: 8.108033e-01	ci right 8.260108e-01	k: 8185	n:10000
KS ci ratio: 2.394201e-02	ci left: 7.194657e-01	ci right 7.370011e-01	k: 7283	n:10000
HNRNPA3   10000 perm   2 sec   (5597 perm/sec)   p_kst 7.283000e-01   p_cons 8.185000e-01   p_joint 8.139000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPA3.5_1177_10000_0.7283_0.8185_0.8139.png
                gene_name: HNRNPA3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 15 percent done.
HOOK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.419792e-02	ci left: 4.304391e-01	ci right 4.499957e-01	k: 4402	n:10000
Cons ci ratio: 2.695096e-02	ci left: 6.697486e-01	ci right 6.881471e-01	k: 6790	n:10000
KS ci ratio: 6.460297e-02	ci left: 2.603270e-01	ci right 2.778077e-01	k: 2690	n:10000
HOOK1   10000 perm   2 sec   (5383 perm/sec)   p_kst 2.690000e-01   p_cons 6.790000e-01   p_joint 4.402000e-01

Outputting figure to mutsig2_images.part000000000080/HOOK1.5_2275_10000_0.269_0.679_0.4402.png
                gene_name: HOOK1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 18 percent done.
HOXA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.513262e-02	ci left: 2.571609e-01	ci right 2.745757e-01	k: 2658	n:10000
Cons ci ratio: 4.288625e-02	ci left: 4.453040e-01	ci right 4.649221e-01	k: 4551	n:10000
KS ci ratio: 1.139578e-01	ci left: 9.973948e-02	ci right 1.118912e-01	k: 1057	n:10000
HOXA6   10000 perm   2 sec   (6515 perm/sec)   p_kst 1.057000e-01   p_cons 4.551000e-01   p_joint 2.658000e-01

Joint ci ratio: 4.766641e-02	ci left: 2.466391e-01	ci right 2.587329e-01	k: 5053	n:20000
Cons ci ratio: 3.002681e-02	ci left: 4.531239e-01	ci right 4.669878e-01	k: 9201	n:20000
KS ci ratio: 8.090291e-02	ci left: 1.007841e-01	ci right 1.093311e-01	k: 2100	n:20000
HOXA6   20000 perm   3 sec   (5932 perm/sec)   p_kst 1.050000e-01   p_cons 4.600500e-01   p_joint 2.526500e-01

Outputting figure to mutsig2_images.part000000000080/HOXA6.5_710_20000_0.105_0.46005_0.25265.png
                gene_name: HOXA6
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 20 percent done.
HMGCLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
Cons ci ratio: 7.829804e-01	ci left: 1.538312e-03	ci right 3.568919e-03	k: 24	n:10000
KS ci ratio: 7.150104e-02	ci left: 2.227686e-01	ci right 2.393884e-01	k: 2310	n:10000
HMGCLL1   10000 perm   2 sec   (5798 perm/sec)   p_kst 2.310000e-01   p_cons 2.400000e-03   p_joint 3.560000e-02

Joint ci ratio: 1.494591e-01	ci left: 3.076009e-02	ci right 3.577680e-02	k: 664	n:20000
Cons ci ratio: 4.579519e-01	ci left: 2.817812e-03	ci right 4.531487e-03	k: 72	n:20000
KS ci ratio: 5.018527e-02	ci left: 2.278491e-01	ci right 2.396284e-01	k: 4674	n:20000
HMGCLL1   20000 perm   4 sec   (5530 perm/sec)   p_kst 2.337000e-01   p_cons 3.600000e-03   p_joint 3.320000e-02

Joint ci ratio: 1.516017e-01	ci left: 2.014522e-02	ci right 2.348162e-02	k: 653	n:30000
Cons ci ratio: 3.874710e-01	ci left: 2.743017e-03	ci right 4.089323e-03	k: 101	n:30000
KS ci ratio: 4.088683e-02	ci left: 2.297148e-01	ci right 2.393366e-01	k: 7035	n:30000
HMGCLL1   30000 perm   6 sec   (5376 perm/sec)   p_kst 2.345000e-01   p_cons 3.366667e-03   p_joint 2.176667e-02

Joint ci ratio: 1.157990e-01	ci left: 2.623506e-02	ci right 2.948397e-02	k: 1113	n:40000
Cons ci ratio: 3.486666e-01	ci left: 2.601872e-03	ci right 3.722182e-03	k: 125	n:40000
KS ci ratio: 3.547661e-02	ci left: 2.296840e-01	ci right 2.380046e-01	k: 9353	n:40000
HMGCLL1   40000 perm   8 sec   (5258 perm/sec)   p_kst 2.338250e-01   p_cons 3.125000e-03   p_joint 2.782500e-02

Joint ci ratio: 1.119369e-01	ci left: 2.259837e-02	ci right 2.529729e-02	k: 1196	n:50000
Cons ci ratio: 2.680186e-01	ci left: 3.689404e-03	ci right 4.849313e-03	k: 212	n:50000
KS ci ratio: 3.164738e-02	ci left: 2.310702e-01	ci right 2.385206e-01	k: 11739	n:50000
HMGCLL1   50000 perm   10 sec   (4905 perm/sec)   p_kst 2.347800e-01   p_cons 4.240000e-03   p_joint 2.392000e-02

Joint ci ratio: 9.273874e-02	ci left: 2.757403e-02	ci right 3.027179e-02	k: 1734	n:60000
Cons ci ratio: 2.489076e-01	ci left: 3.604482e-03	ci right 4.644385e-03	k: 246	n:60000
KS ci ratio: 2.886590e-02	ci left: 2.316948e-01	ci right 2.384975e-01	k: 14105	n:60000
HMGCLL1   60000 perm   12 sec   (4872 perm/sec)   p_kst 2.350833e-01   p_cons 4.100000e-03   p_joint 2.890000e-02

Joint ci ratio: 9.290843e-02	ci left: 2.364657e-02	ci right 2.596447e-02	k: 1735	n:70000
Cons ci ratio: 2.313188e-01	ci left: 3.613220e-03	ci right 4.571464e-03	k: 285	n:70000
KS ci ratio: 2.663367e-02	ci left: 2.331711e-01	ci right 2.394794e-01	k: 16542	n:70000
HMGCLL1   70000 perm   15 sec   (4803 perm/sec)   p_kst 2.363143e-01   p_cons 4.071429e-03   p_joint 2.478571e-02

Joint ci ratio: 8.805241e-02	ci left: 2.310948e-02	ci right 2.525022e-02	k: 1933	n:80000
Cons ci ratio: 2.150152e-01	ci left: 3.692676e-03	ci right 4.593868e-03	k: 330	n:80000
KS ci ratio: 2.495179e-02	ci left: 2.328245e-01	ci right 2.387197e-01	k: 18861	n:80000
HMGCLL1   80000 perm   17 sec   (4732 perm/sec)   p_kst 2.357625e-01   p_cons 4.125000e-03   p_joint 2.416250e-02

Joint ci ratio: 7.305393e-02	ci left: 2.986634e-02	ci right 3.214179e-02	k: 2789	n:90000
Cons ci ratio: 2.020047e-01	ci left: 3.745771e-03	ci right 4.597787e-03	k: 374	n:90000
KS ci ratio: 2.353839e-02	ci left: 2.327862e-01	ci right 2.383419e-01	k: 21200	n:90000
HMGCLL1   90000 perm   19 sec   (4668 perm/sec)   p_kst 2.355556e-01   p_cons 4.155556e-03   p_joint 3.098889e-02

Joint ci ratio: 6.842174e-02	ci left: 3.069156e-02	ci right 3.287571e-02	k: 3177	n:100000
Cons ci ratio: 1.879740e-01	ci left: 3.922943e-03	ci right 4.746214e-03	k: 432	n:100000
KS ci ratio: 2.235262e-02	ci left: 2.325740e-01	ci right 2.378414e-01	k: 23520	n:100000
HMGCLL1   100000 perm   22 sec   (4600 perm/sec)   p_kst 2.352000e-01   p_cons 4.320000e-03   p_joint 3.177000e-02

Joint ci ratio: 6.144331e-02	ci left: 3.458438e-02	ci right 3.678564e-02	k: 3924	n:110000
Cons ci ratio: 1.812046e-01	ci left: 3.852439e-03	ci right 4.628603e-03	k: 465	n:110000
KS ci ratio: 2.130975e-02	ci left: 2.327414e-01	ci right 2.377635e-01	k: 25877	n:110000
HMGCLL1   110000 perm   24 sec   (4532 perm/sec)   p_kst 2.352455e-01   p_cons 4.227273e-03   p_joint 3.567273e-02

Joint ci ratio: 5.758262e-02	ci left: 3.611160e-02	ci right 3.826084e-02	k: 4461	n:120000
Cons ci ratio: 1.728705e-01	ci left: 3.897764e-03	ci right 4.643173e-03	k: 511	n:120000
KS ci ratio: 2.038486e-02	ci left: 2.331597e-01	ci right 2.379698e-01	k: 28267	n:120000
HMGCLL1   120000 perm   27 sec   (4463 perm/sec)   p_kst 2.355583e-01   p_cons 4.258333e-03   p_joint 3.717500e-02

Joint ci ratio: 4.980049e-02	ci left: 4.435826e-02	ci right 4.663130e-02	k: 5913	n:130000
Cons ci ratio: 1.657389e-01	ci left: 3.929432e-03	ci right 4.646803e-03	k: 556	n:130000
KS ci ratio: 1.957747e-02	ci left: 2.333949e-01	ci right 2.380169e-01	k: 30641	n:130000
HMGCLL1   130000 perm   30 sec   (4386 perm/sec)   p_kst 2.357000e-01   p_cons 4.276923e-03   p_joint 4.548462e-02

Joint ci ratio: 4.804797e-02	ci left: 4.429418e-02	ci right 4.648184e-02	k: 6353	n:140000
Cons ci ratio: 1.588935e-01	ci left: 3.984554e-03	ci right 4.679079e-03	k: 605	n:140000
KS ci ratio: 1.887771e-02	ci left: 2.332437e-01	ci right 2.376958e-01	k: 32965	n:140000
HMGCLL1   140000 perm   32 sec   (4335 perm/sec)   p_kst 2.354643e-01   p_cons 4.321429e-03   p_joint 4.537857e-02

Joint ci ratio: 4.762531e-02	ci left: 4.218324e-02	ci right 4.424780e-02	k: 6481	n:150000
Cons ci ratio: 1.533027e-01	ci left: 4.007204e-03	ci right 4.678844e-03	k: 650	n:150000
KS ci ratio: 1.825034e-02	ci left: 2.330688e-01	ci right 2.373681e-01	k: 35282	n:150000
HMGCLL1   150000 perm   35 sec   (4258 perm/sec)   p_kst 2.352133e-01   p_cons 4.333333e-03   p_joint 4.320667e-02

Joint ci ratio: 4.982603e-02	ci left: 3.631500e-02	ci right 3.817681e-02	k: 5958	n:160000
Cons ci ratio: 1.484776e-01	ci left: 4.015359e-03	ci right 4.665303e-03	k: 693	n:160000
KS ci ratio: 1.768471e-02	ci left: 2.328556e-01	ci right 2.370165e-01	k: 37589	n:160000
HMGCLL1   160000 perm   38 sec   (4162 perm/sec)   p_kst 2.349313e-01   p_cons 4.331250e-03   p_joint 3.723750e-02

Joint ci ratio: 5.871095e-02	ci left: 2.480219e-02	ci right 2.630816e-02	k: 4343	n:170000
Cons ci ratio: 1.664235e-01	ci left: 2.982185e-03	ci right 3.529090e-03	k: 552	n:170000
KS ci ratio: 1.714249e-02	ci left: 2.332148e-01	ci right 2.372531e-01	k: 39989	n:170000
HMGCLL1   170000 perm   41 sec   (4105 perm/sec)   p_kst 2.352294e-01   p_cons 3.247059e-03   p_joint 2.554706e-02

Joint ci ratio: 5.702200e-02	ci left: 2.485333e-02	ci right 2.631756e-02	k: 4604	n:180000
Cons ci ratio: 1.620862e-01	ci left: 2.976323e-03	ci right 3.506542e-03	k: 582	n:180000
KS ci ratio: 1.666937e-02	ci left: 2.330594e-01	ci right 2.369825e-01	k: 42303	n:180000
HMGCLL1   180000 perm   44 sec   (4051 perm/sec)   p_kst 2.350167e-01   p_cons 3.233333e-03   p_joint 2.557778e-02

Joint ci ratio: 5.559414e-02	ci left: 2.479061e-02	ci right 2.621339e-02	k: 4844	n:190000
Cons ci ratio: 1.576846e-01	ci left: 2.986411e-03	ci right 3.502613e-03	k: 615	n:190000
KS ci ratio: 1.622317e-02	ci left: 2.331474e-01	ci right 2.369659e-01	k: 44660	n:190000
HMGCLL1   190000 perm   48 sec   (3996 perm/sec)   p_kst 2.350526e-01   p_cons 3.236842e-03   p_joint 2.549474e-02

Joint ci ratio: 5.558936e-02	ci left: 2.358518e-02	ci right 2.493866e-02	k: 4851	n:200000
Cons ci ratio: 1.539807e-01	ci left: 2.981241e-03	ci right 3.483328e-03	k: 645	n:200000
KS ci ratio: 1.580680e-02	ci left: 2.333226e-01	ci right 2.370450e-01	k: 47036	n:200000
HMGCLL1   200000 perm   51 sec   (3945 perm/sec)   p_kst 2.351800e-01   p_cons 3.225000e-03   p_joint 2.425500e-02

Joint ci ratio: 5.517574e-02	ci left: 2.282342e-02	ci right 2.412312e-02	k: 4928	n:210000
Cons ci ratio: 1.513140e-01	ci left: 2.944613e-03	ci right 3.431165e-03	k: 668	n:210000
KS ci ratio: 1.542726e-02	ci left: 2.333351e-01	ci right 2.369675e-01	k: 49381	n:210000
HMGCLL1   210000 perm   54 sec   (3894 perm/sec)   p_kst 2.351476e-01   p_cons 3.180952e-03   p_joint 2.346667e-02

Joint ci ratio: 5.113870e-02	ci left: 2.534798e-02	ci right 2.668273e-02	k: 5722	n:220000
Cons ci ratio: 1.469809e-01	ci left: 2.985806e-03	ci right 3.463795e-03	k: 708	n:220000
KS ci ratio: 1.507495e-02	ci left: 2.333202e-01	ci right 2.368686e-01	k: 51720	n:220000
HMGCLL1   220000 perm   57 sec   (3843 perm/sec)   p_kst 2.350909e-01   p_cons 3.218182e-03   p_joint 2.600909e-02

Joint ci ratio: 4.998521e-02	ci left: 2.539210e-02	ci right 2.669814e-02	k: 5989	n:230000
Cons ci ratio: 1.432881e-01	ci left: 3.011019e-03	ci right 3.479899e-03	k: 745	n:230000
KS ci ratio: 1.473824e-02	ci left: 2.334895e-01	ci right 2.369606e-01	k: 54101	n:230000
HMGCLL1   230000 perm   61 sec   (3769 perm/sec)   p_kst 2.352217e-01   p_cons 3.239130e-03   p_joint 2.603913e-02

Joint ci ratio: 5.053022e-02	ci left: 2.384401e-02	ci right 2.508418e-02	k: 5870	n:240000
Cons ci ratio: 1.398604e-01	ci left: 3.034269e-03	ci right 3.494523e-03	k: 782	n:240000
KS ci ratio: 1.453539e-02	ci left: 2.308735e-01	ci right 2.342580e-01	k: 55815	n:240000
HMGCLL1   240000 perm   65 sec   (3709 perm/sec)   p_kst 2.325625e-01   p_cons 3.258333e-03   p_joint 2.445833e-02

Joint ci ratio: 5.034520e-02	ci left: 2.307960e-02	ci right 2.427548e-02	k: 5918	n:250000
Cons ci ratio: 1.369189e-01	ci left: 3.044191e-03	ci right 3.495447e-03	k: 816	n:250000
KS ci ratio: 1.424613e-02	ci left: 2.307973e-01	ci right 2.341129e-01	k: 58113	n:250000
HMGCLL1   250000 perm   68 sec   (3665 perm/sec)   p_kst 2.324520e-01   p_cons 3.264000e-03   p_joint 2.367200e-02

Joint ci ratio: 4.936244e-02	ci left: 2.309590e-02	ci right 2.426860e-02	k: 6156	n:260000
Cons ci ratio: 1.343934e-01	ci left: 3.042290e-03	ci right 3.484282e-03	k: 847	n:260000
KS ci ratio: 1.396656e-02	ci left: 2.309042e-01	ci right 2.341556e-01	k: 60457	n:260000
HMGCLL1   260000 perm   72 sec   (3620 perm/sec)   p_kst 2.325269e-01   p_cons 3.257692e-03   p_joint 2.367692e-02

Joint ci ratio: 4.389608e-02	ci left: 2.805878e-02	ci right 2.932173e-02	k: 7745	n:270000
Cons ci ratio: 1.315530e-01	ci left: 3.062093e-03	ci right 3.496825e-03	k: 884	n:270000
KS ci ratio: 1.371150e-02	ci left: 2.307783e-01	ci right 2.339682e-01	k: 62740	n:270000
HMGCLL1   270000 perm   76 sec   (3576 perm/sec)   p_kst 2.323704e-01   p_cons 3.274074e-03   p_joint 2.868519e-02

Joint ci ratio: 4.180460e-02	ci left: 2.980958e-02	ci right 3.108588e-02	k: 8524	n:280000
Cons ci ratio: 1.296637e-01	ci left: 3.042554e-03	ci right 3.467830e-03	k: 910	n:280000
KS ci ratio: 1.345806e-02	ci left: 2.309755e-01	ci right 2.341086e-01	k: 65111	n:280000
HMGCLL1   280000 perm   79 sec   (3534 perm/sec)   p_kst 2.325393e-01   p_cons 3.250000e-03   p_joint 3.044286e-02

Joint ci ratio: 4.106184e-02	ci left: 2.984298e-02	ci right 3.109746e-02	k: 8835	n:290000
Cons ci ratio: 1.268390e-01	ci left: 3.074485e-03	ci right 3.494159e-03	k: 951	n:290000
KS ci ratio: 1.322021e-02	ci left: 2.311046e-01	ci right 2.341835e-01	k: 67466	n:290000
HMGCLL1   290000 perm   83 sec   (3492 perm/sec)   p_kst 2.326414e-01   p_cons 3.279310e-03   p_joint 3.046552e-02

Joint ci ratio: 4.173260e-02	ci left: 2.797345e-02	ci right 2.916901e-02	k: 8570	n:300000
Cons ci ratio: 1.248234e-01	ci left: 3.072083e-03	ci right 3.484272e-03	k: 982	n:300000
KS ci ratio: 1.299393e-02	ci left: 2.312421e-01	ci right 2.342698e-01	k: 69826	n:300000
HMGCLL1   300000 perm   87 sec   (3448 perm/sec)   p_kst 2.327533e-01   p_cons 3.273333e-03   p_joint 2.856667e-02

Joint ci ratio: 3.976597e-02	ci left: 2.978883e-02	ci right 3.100062e-02	k: 9421	n:310000
Cons ci ratio: 1.227794e-01	ci left: 3.076139e-03	ci right 3.481622e-03	k: 1015	n:310000
KS ci ratio: 1.278143e-02	ci left: 2.313003e-01	ci right 2.342789e-01	k: 72164	n:310000
HMGCLL1   310000 perm   91 sec   (3404 perm/sec)   p_kst 2.327871e-01   p_cons 3.274194e-03   p_joint 3.039032e-02

Joint ci ratio: 3.825020e-02	ci left: 3.116996e-02	ci right 3.238854e-02	k: 10168	n:320000
Cons ci ratio: 1.208906e-01	ci left: 3.076962e-03	ci right 3.475868e-03	k: 1047	n:320000
KS ci ratio: 1.258453e-02	ci left: 2.311994e-01	ci right 2.341304e-01	k: 74452	n:320000
HMGCLL1   320000 perm   95 sec   (3364 perm/sec)   p_kst 2.326625e-01   p_cons 3.271875e-03   p_joint 3.177500e-02

Joint ci ratio: 3.706587e-02	ci left: 3.217387e-02	ci right 3.339193e-02	k: 10817	n:330000
Cons ci ratio: 1.188656e-01	ci left: 3.089541e-03	ci right 3.482897e-03	k: 1083	n:330000
KS ci ratio: 1.238615e-02	ci left: 2.314013e-01	ci right 2.342883e-01	k: 76838	n:330000
HMGCLL1   330000 perm   99 sec   (3327 perm/sec)   p_kst 2.328424e-01   p_cons 3.281818e-03   p_joint 3.277879e-02

Joint ci ratio: 3.663723e-02	ci left: 3.197644e-02	ci right 3.317272e-02	k: 11074	n:340000
Cons ci ratio: 1.173075e-01	ci left: 3.081446e-03	ci right 3.468273e-03	k: 1112	n:340000
KS ci ratio: 1.220641e-02	ci left: 2.313128e-01	ci right 2.341565e-01	k: 79129	n:340000
HMGCLL1   340000 perm   103 sec   (3291 perm/sec)   p_kst 2.327324e-01   p_cons 3.270588e-03   p_joint 3.257059e-02

Joint ci ratio: 3.653917e-02	ci left: 3.125512e-02	ci right 3.242122e-02	k: 11142	n:350000
Cons ci ratio: 1.155556e-01	ci left: 3.087719e-03	ci right 3.469149e-03	k: 1146	n:350000
KS ci ratio: 1.203378e-02	ci left: 2.312439e-01	ci right 2.340463e-01	k: 81425	n:350000
HMGCLL1   350000 perm   107 sec   (3256 perm/sec)   p_kst 2.326429e-01   p_cons 3.274286e-03   p_joint 3.183429e-02

Joint ci ratio: 3.599142e-02	ci left: 3.132557e-02	ci right 3.247642e-02	k: 11483	n:360000
Cons ci ratio: 1.140739e-01	ci left: 3.082889e-03	ci right 3.458510e-03	k: 1176	n:360000
KS ci ratio: 1.186413e-02	ci left: 2.313038e-01	ci right 2.340671e-01	k: 83766	n:360000
HMGCLL1   360000 perm   112 sec   (3219 perm/sec)   p_kst 2.326833e-01   p_cons 3.266667e-03   p_joint 3.189722e-02

Joint ci ratio: 3.553595e-02	ci left: 3.127445e-02	ci right 3.240858e-02	k: 11780	n:370000
Cons ci ratio: 1.124609e-01	ci left: 3.088857e-03	ci right 3.459531e-03	k: 1210	n:370000
KS ci ratio: 1.170438e-02	ci left: 2.312718e-01	ci right 2.339973e-01	k: 86074	n:370000
HMGCLL1   370000 perm   117 sec   (3172 perm/sec)   p_kst 2.326324e-01   p_cons 3.270270e-03   p_joint 3.183784e-02

Joint ci ratio: 3.717497e-02	ci left: 2.790021e-02	ci right 2.895963e-02	k: 10802	n:380000
Cons ci ratio: 1.111386e-01	ci left: 3.081752e-03	ci right 3.446940e-03	k: 1239	n:380000
KS ci ratio: 1.154801e-02	ci left: 2.313310e-01	ci right 2.340205e-01	k: 88416	n:380000
HMGCLL1   380000 perm   121 sec   (3139 perm/sec)   p_kst 2.326737e-01   p_cons 3.260526e-03   p_joint 2.842632e-02

Joint ci ratio: 3.620300e-02	ci left: 2.865602e-02	ci right 2.971510e-02	k: 11381	n:390000
Cons ci ratio: 1.099053e-01	ci left: 3.072542e-03	ci right 3.432337e-03	k: 1267	n:390000
KS ci ratio: 1.140045e-02	ci left: 2.313029e-01	ci right 2.339575e-01	k: 90725	n:390000
HMGCLL1   390000 perm   126 sec   (3105 perm/sec)   p_kst 2.326282e-01   p_cons 3.248718e-03   p_joint 2.918205e-02

Joint ci ratio: 3.577420e-02	ci left: 2.862092e-02	ci right 2.966592e-02	k: 11656	n:400000
Cons ci ratio: 1.087543e-01	ci left: 3.061382e-03	ci right 3.415875e-03	k: 1294	n:400000
KS ci ratio: 1.126133e-02	ci left: 2.311841e-01	ci right 2.338048e-01	k: 92997	n:400000
HMGCLL1   400000 perm   130 sec   (3073 perm/sec)   p_kst 2.324925e-01   p_cons 3.235000e-03   p_joint 2.914000e-02

Joint ci ratio: 3.373749e-02	ci left: 3.133999e-02	ci right 3.241786e-02	k: 13069	n:410000
Cons ci ratio: 1.078846e-01	ci left: 3.036544e-03	ci right 3.385170e-03	k: 1315	n:410000
KS ci ratio: 1.112679e-02	ci left: 2.310835e-01	ci right 2.336715e-01	k: 95274	n:410000
HMGCLL1   410000 perm   135 sec   (3040 perm/sec)   p_kst 2.323756e-01   p_cons 3.207317e-03   p_joint 3.187561e-02

Joint ci ratio: 3.543867e-02	ci left: 2.780527e-02	ci right 2.881077e-02	k: 11888	n:420000
Cons ci ratio: 1.070354e-01	ci left: 3.012899e-03	ci right 3.355916e-03	k: 1336	n:420000
KS ci ratio: 1.099293e-02	ci left: 2.311186e-01	ci right 2.336756e-01	k: 97606	n:420000
HMGCLL1   420000 perm   140 sec   (3003 perm/sec)   p_kst 2.323952e-01   p_cons 3.180952e-03   p_joint 2.830476e-02

Joint ci ratio: 3.228706e-02	ci left: 3.260881e-02	ci right 3.368122e-02	k: 14251	n:430000
Cons ci ratio: 1.059324e-01	ci left: 3.006213e-03	ci right 3.344722e-03	k: 1364	n:430000
KS ci ratio: 1.086407e-02	ci left: 2.311429e-01	ci right 2.336700e-01	k: 99934	n:430000
HMGCLL1   430000 perm   145 sec   (2973 perm/sec)   p_kst 2.324047e-01   p_cons 3.172093e-03   p_joint 3.314186e-02

Joint ci ratio: 3.387028e-02	ci left: 2.904258e-02	ci right 3.004544e-02	k: 12998	n:440000
Cons ci ratio: 1.045995e-01	ci left: 3.015342e-03	ci right 3.350344e-03	k: 1399	n:440000
KS ci ratio: 1.074251e-02	ci left: 2.310710e-01	ci right 2.335689e-01	k: 102220	n:440000
HMGCLL1   440000 perm   149 sec   (2944 perm/sec)   p_kst 2.323182e-01   p_cons 3.179545e-03   p_joint 2.954091e-02

Joint ci ratio: 3.297332e-02	ci left: 2.994879e-02	ci right 3.095504e-02	k: 13702	n:450000
Cons ci ratio: 1.032795e-01	ci left: 3.026255e-03	ci right 3.357970e-03	k: 1435	n:450000
KS ci ratio: 1.062421e-02	ci left: 2.310268e-01	ci right 2.334966e-01	k: 104517	n:450000
HMGCLL1   450000 perm   154 sec   (2915 perm/sec)   p_kst 2.322600e-01   p_cons 3.188889e-03   p_joint 3.044889e-02

Joint ci ratio: 2.995352e-02	ci left: 3.535774e-02	ci right 3.643507e-02	k: 16511	n:460000
Cons ci ratio: 1.022176e-01	ci left: 3.024009e-03	ci right 3.351864e-03	k: 1465	n:460000
KS ci ratio: 1.051012e-02	ci left: 2.309717e-01	ci right 2.334142e-01	k: 106808	n:460000
HMGCLL1   460000 perm   159 sec   (2886 perm/sec)   p_kst 2.321913e-01   p_cons 3.184783e-03   p_joint 3.589348e-02

Joint ci ratio: 2.897674e-02	ci left: 3.693540e-02	ci right 3.802350e-02	k: 17614	n:470000
Cons ci ratio: 1.010184e-01	ci left: 3.032244e-03	ci right 3.356907e-03	k: 1500	n:470000
KS ci ratio: 1.040174e-02	ci left: 2.308469e-01	ci right 2.332628e-01	k: 109065	n:470000
HMGCLL1   470000 perm   165 sec   (2855 perm/sec)   p_kst 2.320532e-01   p_cons 3.191489e-03   p_joint 3.747660e-02

Joint ci ratio: 2.855952e-02	ci left: 3.722706e-02	ci right 3.830770e-02	k: 18127	n:480000
Cons ci ratio: 1.000240e-01	ci left: 3.030001e-03	ci right 3.351042e-03	k: 1530	n:480000
KS ci ratio: 1.029412e-02	ci left: 2.308148e-01	ci right 2.332051e-01	k: 111364	n:480000
HMGCLL1   480000 perm   170 sec   (2821 perm/sec)   p_kst 2.320083e-01   p_cons 3.187500e-03   p_joint 3.776458e-02

Joint ci ratio: 2.826316e-02	ci left: 3.724138e-02	ci right 3.831103e-02	k: 18509	n:490000
Cons ci ratio: 9.883633e-02	ci left: 3.041797e-03	ci right 3.360040e-03	k: 1567	n:490000
KS ci ratio: 1.019053e-02	ci left: 2.307576e-01	ci right 2.331232e-01	k: 113650	n:490000
HMGCLL1   490000 perm   176 sec   (2791 perm/sec)   p_kst 2.319388e-01   p_cons 3.197959e-03   p_joint 3.777347e-02

Outputting figure to mutsig2_images.part000000000080/HMGCLL1.4_1153_490000_0.23194_0.003198_0.037773.png
                gene_name: HMGCLL1
               theta_stop: 0.099 
                    nperm: 490000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.0032 
      ci_cons_bounds_left: 0.0030 
     ci_cons_bounds_right: 0.0034 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.038 

Current progress: 22 percent done.
HNMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.008264e-02	ci left: 3.702737e-01	ci right 3.893963e-01	k: 3798	n:10000
Cons ci ratio: 1.962522e-02	ci left: 7.916175e-01	ci right 8.074076e-01	k: 7996	n:10000
KS ci ratio: 7.507969e-02	ci left: 2.060944e-01	ci right 2.222724e-01	k: 2141	n:10000
HNMT   10000 perm   2 sec   (6488 perm/sec)   p_kst 2.141000e-01   p_cons 7.996000e-01   p_joint 3.798000e-01

Outputting figure to mutsig2_images.part000000000080/HNMT.4_1121_10000_0.2141_0.7996_0.3798.png
                gene_name: HNMT
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 25 percent done.
HNRNPAB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.132906e-02	ci left: 4.636729e-01	ci right 4.833426e-01	k: 4735	n:10000
Cons ci ratio: 3.310805e-02	ci left: 5.738649e-01	ci right 5.932863e-01	k: 5836	n:10000
KS ci ratio: 6.347270e-02	ci left: 2.672549e-01	ci right 2.848757e-01	k: 2760	n:10000
HNRNPAB   10000 perm   2 sec   (5998 perm/sec)   p_kst 2.760000e-01   p_cons 5.836000e-01   p_joint 4.735000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPAB.4_1027_10000_0.276_0.5836_0.4735.png
                gene_name: HNRNPAB
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 28 percent done.
HNRNPF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.506606e-01	ci left: 5.860517e-02	ci right 6.825107e-02	k: 633	n:10000
Cons ci ratio: 1.460163e-02	ci left: 8.716295e-01	ci right 8.845493e-01	k: 8782	n:10000
KS ci ratio: 2.757973e-01	ci left: 1.706687e-02	ci right 2.261782e-02	k: 197	n:10000
HNRNPF   10000 perm   2 sec   (5552 perm/sec)   p_kst 1.970000e-02   p_cons 8.782000e-01   p_joint 6.330000e-02

Joint ci ratio: 1.175168e-01	ci left: 4.959502e-02	ci right 5.583583e-02	k: 1053	n:20000
Cons ci ratio: 1.035760e-02	ci left: 8.728762e-01	ci right 8.820138e-01	k: 17550	n:20000
KS ci ratio: 1.991674e-01	ci left: 1.710552e-02	ci right 2.093613e-02	k: 379	n:20000
HNRNPF   20000 perm   4 sec   (5042 perm/sec)   p_kst 1.895000e-02   p_cons 8.775000e-01   p_joint 5.265000e-02

Joint ci ratio: 1.070718e-01	ci left: 4.047235e-02	ci right 4.508339e-02	k: 1282	n:30000
Cons ci ratio: 8.509016e-03	ci left: 8.723862e-01	ci right 8.798741e-01	k: 26285	n:30000
KS ci ratio: 1.627664e-01	ci left: 1.742115e-02	ci right 2.053966e-02	k: 568	n:30000
HNRNPF   30000 perm   6 sec   (4963 perm/sec)   p_kst 1.893333e-02   p_cons 8.761667e-01   p_joint 4.273333e-02

Joint ci ratio: 8.561386e-02	ci left: 4.766398e-02	ci right 5.195167e-02	k: 1991	n:40000
Cons ci ratio: 7.375409e-03	ci left: 8.727051e-01	ci right 8.791902e-01	k: 35039	n:40000
KS ci ratio: 1.425650e-01	ci left: 1.722613e-02	ci right 1.989441e-02	k: 741	n:40000
HNRNPF   40000 perm   8 sec   (4812 perm/sec)   p_kst 1.852500e-02   p_cons 8.759750e-01   p_joint 4.977500e-02

Joint ci ratio: 7.736350e-02	ci left: 4.694741e-02	ci right 5.074519e-02	k: 2441	n:50000
Cons ci ratio: 6.550937e-03	ci left: 8.745741e-01	ci right 8.803420e-01	k: 43874	n:50000
KS ci ratio: 1.278307e-01	ci left: 1.727878e-02	ci right 1.965759e-02	k: 922	n:50000
HNRNPF   50000 perm   11 sec   (4746 perm/sec)   p_kst 1.844000e-02   p_cons 8.774800e-01   p_joint 4.882000e-02

Joint ci ratio: 7.917580e-02	ci left: 3.769383e-02	ci right 4.081761e-02	k: 2354	n:60000
Cons ci ratio: 5.966114e-03	ci left: 8.753378e-01	ci right 8.805923e-01	k: 52679	n:60000
KS ci ratio: 1.125500e-01	ci left: 1.870023e-02	ci right 2.094656e-02	k: 1188	n:60000
HNRNPF   60000 perm   13 sec   (4673 perm/sec)   p_kst 1.980000e-02   p_cons 8.779833e-01   p_joint 3.923333e-02

Joint ci ratio: 7.187811e-02	ci left: 3.929027e-02	ci right 4.223367e-02	k: 2852	n:70000
Cons ci ratio: 5.508352e-03	ci left: 8.761290e-01	ci right 8.809825e-01	k: 61500	n:70000
KS ci ratio: 1.047481e-01	ci left: 1.858590e-02	ci right 2.065419e-02	k: 1372	n:70000
HNRNPF   70000 perm   15 sec   (4598 perm/sec)   p_kst 1.960000e-02   p_cons 8.785714e-01   p_joint 4.074286e-02

Joint ci ratio: 7.418446e-02	ci left: 3.247249e-02	ci right 3.498648e-02	k: 2697	n:80000
Cons ci ratio: 5.147354e-03	ci left: 8.765059e-01	ci right 8.810416e-01	k: 70303	n:80000
KS ci ratio: 9.830757e-02	ci left: 1.852863e-02	ci right 2.045644e-02	k: 1558	n:80000
HNRNPF   80000 perm   18 sec   (4531 perm/sec)   p_kst 1.947500e-02   p_cons 8.787875e-01   p_joint 3.371250e-02

Outputting figure to mutsig2_images.part000000000080/HNRNPF.4_1252_80000_0.019475_0.87879_0.033712.png
                gene_name: HNRNPF
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.035 

Current progress: 30 percent done.
HNRNPK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.874557e-02	ci left: 8.061311e-01	ci right 8.214857e-01	k: 8139	n:10000
Cons ci ratio: 7.044556e-03	ci left: 9.652030e-01	ci right 9.721204e-01	k: 9688	n:10000
KS ci ratio: 4.339994e-02	ci left: 4.394169e-01	ci right 4.590127e-01	k: 4492	n:10000
HNRNPK   10000 perm   2 sec   (6087 perm/sec)   p_kst 4.492000e-01   p_cons 9.688000e-01   p_joint 8.139000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPK.4_1490_10000_0.4492_0.9688_0.8139.png
                gene_name: HNRNPK
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 32 percent done.
HOOK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.509389e-02	ci left: 3.267412e-01	ci right 3.453544e-01	k: 3360	n:10000
Cons ci ratio: 2.286705e-02	ci left: 7.374485e-01	ci right 7.546079e-01	k: 7461	n:10000
KS ci ratio: 7.275060e-02	ci left: 2.167479e-01	ci right 2.332127e-01	k: 2249	n:10000
HOOK3   10000 perm   2 sec   (5990 perm/sec)   p_kst 2.249000e-01   p_cons 7.461000e-01   p_joint 3.360000e-01

Outputting figure to mutsig2_images.part000000000080/HOOK3.4_2245_10000_0.2249_0.7461_0.336.png
                gene_name: HOOK3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 35 percent done.
HMGCR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.235470e-02	ci left: 9.039125e-01	ci right 9.152476e-01	k: 9097	n:10000
KS ci ratio: 7.307472e-03	ci left: 9.627847e-01	ci right 9.699403e-01	k: 9665	n:10000
HMGCR   10000 perm   2 sec   (6005 perm/sec)   p_kst 9.665000e-01   p_cons 9.097000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HMGCR.3_2743_10000_0.9665_0.9097_1.png
                gene_name: HMGCR
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
HMGN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.186117e-02	ci left: 3.540633e-01	ci right 3.730162e-01	k: 3635	n:10000
Cons ci ratio: 5.905110e-03	ci left: 9.748256e-01	ci right 9.806915e-01	k: 9779	n:10000
KS ci ratio: 1.198728e-01	ci left: 9.078082e-02	ci right 1.024554e-01	k: 965	n:10000
HMGN5   10000 perm   1 sec   (6865 perm/sec)   p_kst 9.650000e-02   p_cons 9.779000e-01   p_joint 3.635000e-01

Joint ci ratio: 4.943354e-02	ci left: 2.332515e-01	ci right 2.451244e-01	k: 4783	n:20000
Cons ci ratio: 3.882867e-03	ci left: 9.788017e-01	ci right 9.826567e-01	k: 19616	n:20000
KS ci ratio: 8.368985e-02	ci left: 9.469809e-02	ci right 1.030190e-01	k: 1976	n:20000
HMGN5   20000 perm   3 sec   (6084 perm/sec)   p_kst 9.880000e-02   p_cons 9.808000e-01   p_joint 2.391500e-01

Outputting figure to mutsig2_images.part000000000080/HMGN5.3_873_20000_0.0988_0.9808_0.23915.png
                gene_name: HMGN5
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 40 percent done.
HMOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.593140e-02	ci left: 3.200898e-01	ci right 3.386097e-01	k: 3293	n:10000
Cons ci ratio: 1.057738e-02	ci left: 9.270955e-01	ci right 9.370510e-01	k: 9322	n:10000
KS ci ratio: 7.074492e-02	ci left: 2.265204e-01	ci right 2.432343e-01	k: 2348	n:10000
HMOX2   10000 perm   1 sec   (7347 perm/sec)   p_kst 2.348000e-01   p_cons 9.322000e-01   p_joint 3.293000e-01

Outputting figure to mutsig2_images.part000000000080/HMOX2.3_971_10000_0.2348_0.9322_0.3293.png
                gene_name: HMOX2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 42 percent done.
HNRNPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.083508e-02	ci left: 4.696656e-01	ci right 4.893464e-01	k: 4795	n:10000
Cons ci ratio: 6.881274e-02	ci left: 2.364969e-01	ci right 2.534520e-01	k: 2449	n:10000
KS ci ratio: 3.559658e-02	ci left: 5.381826e-01	ci right 5.577894e-01	k: 5480	n:10000
HNRNPA1   10000 perm   2 sec   (6564 perm/sec)   p_kst 5.480000e-01   p_cons 2.449000e-01   p_joint 4.795000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPA1.3_1159_10000_0.548_0.2449_0.4795.png
                gene_name: HNRNPA1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 45 percent done.
HNRNPCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.077436e-02	ci left: 2.847843e-01	ci right 3.027359e-01	k: 2937	n:10000
Cons ci ratio: 3.095346e-02	ci left: 6.062845e-01	ci right 6.254480e-01	k: 6159	n:10000
KS ci ratio: 9.711277e-02	ci left: 1.332547e-01	ci right 1.469557e-01	k: 1400	n:10000
HNRNPCL1   10000 perm   1 sec   (6763 perm/sec)   p_kst 1.400000e-01   p_cons 6.159000e-01   p_joint 2.937000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPCL1.3_886_10000_0.14_0.6159_0.2937.png
                gene_name: HNRNPCL1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 48 percent done.
HNRNPM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.669516e-02	ci left: 5.230630e-01	ci right 5.427178e-01	k: 5329	n:10000
Cons ci ratio: 1.207744e-01	ci left: 8.951617e-02	ci right 1.011208e-01	k: 952	n:10000
KS ci ratio: 2.361561e-02	ci left: 7.249193e-01	ci right 7.423444e-01	k: 7337	n:10000
HNRNPM   10000 perm   2 sec   (5607 perm/sec)   p_kst 7.337000e-01   p_cons 9.520000e-02   p_joint 5.329000e-01

Joint ci ratio: 3.414731e-02	ci left: 3.903590e-01	ci right 4.039709e-01	k: 7943	n:20000
Cons ci ratio: 8.572558e-02	ci left: 9.057813e-02	ci right 9.874015e-02	k: 1892	n:20000
KS ci ratio: 1.693199e-02	ci left: 7.220268e-01	ci right 7.344068e-01	k: 14565	n:20000
HNRNPM   20000 perm   4 sec   (5176 perm/sec)   p_kst 7.282500e-01   p_cons 9.460000e-02   p_joint 3.971500e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPM.3_2257_20000_0.72825_0.0946_0.39715.png
                gene_name: HNRNPM
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 50 percent done.
HOMER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.044595e-02	ci left: 3.668915e-01	ci right 3.859806e-01	k: 3764	n:10000
Cons ci ratio: 5.472561e-02	ci left: 3.297201e-01	ci right 3.483737e-01	k: 3390	n:10000
KS ci ratio: 4.648497e-02	ci left: 4.058169e-01	ci right 4.252323e-01	k: 4155	n:10000
HOMER1   10000 perm   1 sec   (6672 perm/sec)   p_kst 4.155000e-01   p_cons 3.390000e-01   p_joint 3.764000e-01

Outputting figure to mutsig2_images.part000000000080/HOMER1.3_1101_10000_0.4155_0.339_0.3764.png
                gene_name: HOMER1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 52 percent done.
HOMEZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.359337e-02	ci left: 4.372220e-01	ci right 4.568089e-01	k: 4470	n:10000
Cons ci ratio: 6.969831e-02	ci left: 2.318535e-01	ci right 2.486980e-01	k: 2402	n:10000
KS ci ratio: 5.103114e-02	ci left: 3.615207e-01	ci right 3.805545e-01	k: 3710	n:10000
HOMEZ   10000 perm   2 sec   (6375 perm/sec)   p_kst 3.710000e-01   p_cons 2.402000e-01   p_joint 4.470000e-01

Outputting figure to mutsig2_images.part000000000080/HOMEZ.3_1661_10000_0.371_0.2402_0.447.png
                gene_name: HOMEZ
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 55 percent done.
HORMAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.804254e-03	ci left: 9.364092e-01	ci right 9.457318e-01	k: 9412	n:10000
Cons ci ratio: 2.432331e-02	ci left: 7.131053e-01	ci right 7.307652e-01	k: 7220	n:10000
KS ci ratio: 2.692624e-02	ci left: 6.701514e-01	ci right 6.885440e-01	k: 6794	n:10000
HORMAD1   10000 perm   1 sec   (6727 perm/sec)   p_kst 6.794000e-01   p_cons 7.220000e-01   p_joint 9.412000e-01

Outputting figure to mutsig2_images.part000000000080/HORMAD1.3_1241_10000_0.6794_0.722_0.9412.png
                gene_name: HORMAD1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 57 percent done.
HOXA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.399460e-02	ci left: 5.609292e-01	ci right 5.804296e-01	k: 5707	n:10000
KS ci ratio: 2.481456e-02	ci left: 7.049308e-01	ci right 7.227445e-01	k: 7139	n:10000
HOXA1   10000 perm   1 sec   (7114 perm/sec)   p_kst 7.139000e-01   p_cons 5.707000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HOXA1.3_1016_10000_0.7139_0.5707_1.png
                gene_name: HOXA1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
HOXA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.423380e-02	ci left: 4.300402e-01	ci right 4.495949e-01	k: 4398	n:10000
Cons ci ratio: 6.020807e-02	ci left: 2.886490e-01	ci right 3.066690e-01	k: 2976	n:10000
KS ci ratio: 4.197272e-02	ci left: 4.559843e-01	ci right 4.756356e-01	k: 4658	n:10000
HOXA3   10000 perm   2 sec   (6622 perm/sec)   p_kst 4.658000e-01   p_cons 2.976000e-01   p_joint 4.398000e-01

Outputting figure to mutsig2_images.part000000000080/HOXA3.3_1340_10000_0.4658_0.2976_0.4398.png
                gene_name: HOXA3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 62 percent done.
HOXA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
Cons ci ratio: 5.107490e-02	ci left: 3.611229e-01	ci right 3.801525e-01	k: 3706	n:10000
KS ci ratio: 2.607453e-01	ci left: 1.921493e-02	ci right 2.506805e-02	k: 220	n:10000
HOXA4   10000 perm   2 sec   (6572 perm/sec)   p_kst 2.200000e-02   p_cons 3.706000e-01   p_joint 4.660000e-02

Joint ci ratio: 1.531921e-01	ci left: 2.926703e-02	ci right 3.417036e-02	k: 633	n:20000
Cons ci ratio: 3.602254e-02	ci left: 3.651460e-01	ci right 3.785913e-01	k: 7437	n:20000
KS ci ratio: 1.814617e-01	ci left: 2.072815e-02	ci right 2.491218e-02	k: 455	n:20000
HOXA4   20000 perm   3 sec   (5839 perm/sec)   p_kst 2.275000e-02   p_cons 3.718500e-01   p_joint 3.165000e-02

Joint ci ratio: 1.250818e-01	ci left: 2.971393e-02	ci right 3.371077e-02	k: 950	n:30000
Cons ci ratio: 3.032964e-02	ci left: 3.522069e-01	ci right 3.630873e-01	k: 10729	n:30000
KS ci ratio: 1.487213e-01	ci left: 2.094787e-02	ci right 2.434544e-02	k: 678	n:30000
HOXA4   30000 perm   5 sec   (5560 perm/sec)   p_kst 2.260000e-02   p_cons 3.576333e-01   p_joint 3.166667e-02

Joint ci ratio: 9.039666e-02	ci left: 4.286675e-02	ci right 4.694965e-02	k: 1795	n:40000
Cons ci ratio: 2.612770e-02	ci left: 3.553687e-01	ci right 3.648017e-01	k: 14403	n:40000
KS ci ratio: 1.308321e-01	ci left: 2.051221e-02	ci right 2.340777e-02	k: 877	n:40000
HOXA4   40000 perm   7 sec   (5397 perm/sec)   p_kst 2.192500e-02   p_cons 3.600750e-01   p_joint 4.487500e-02

Joint ci ratio: 8.615169e-02	ci left: 3.804450e-02	ci right 4.148920e-02	k: 1987	n:50000
Cons ci ratio: 2.338251e-02	ci left: 3.556114e-01	ci right 3.640449e-01	k: 17991	n:50000
KS ci ratio: 1.175412e-01	ci left: 2.047956e-02	ci right 2.305638e-02	k: 1087	n:50000
HOXA4   50000 perm   10 sec   (5174 perm/sec)   p_kst 2.174000e-02   p_cons 3.598200e-01   p_joint 3.974000e-02

Joint ci ratio: 7.298996e-02	ci left: 4.419007e-02	ci right 4.755403e-02	k: 2751	n:60000
Cons ci ratio: 2.130850e-02	ci left: 3.567730e-01	ci right 3.644738e-01	k: 21637	n:60000
KS ci ratio: 1.067002e-01	ci left: 2.082491e-02	ci right 2.318831e-02	k: 1319	n:60000
HOXA4   60000 perm   12 sec   (5035 perm/sec)   p_kst 2.198333e-02   p_cons 3.606167e-01   p_joint 4.585000e-02

Joint ci ratio: 6.746194e-02	ci left: 4.445984e-02	ci right 4.757793e-02	k: 3220	n:70000
Cons ci ratio: 1.971827e-02	ci left: 3.572839e-01	ci right 3.644133e-01	k: 25259	n:70000
KS ci ratio: 9.852392e-02	ci left: 2.102366e-02	ci right 2.321620e-02	k: 1547	n:70000
HOXA4   70000 perm   14 sec   (4936 perm/sec)   p_kst 2.210000e-02   p_cons 3.608429e-01   p_joint 4.600000e-02

Outputting figure to mutsig2_images.part000000000080/HOXA4.3_971_70000_0.0221_0.36084_0.046.png
                gene_name: HOXA4
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.048 

Current progress: 65 percent done.
HOXC12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.799000e-02	ci left: 5.057516e-01	ci right 5.254393e-01	k: 5156	n:10000
Cons ci ratio: 1.025873e-01	ci left: 1.208265e-01	ci right 1.339914e-01	k: 1273	n:10000
KS ci ratio: 1.653384e-02	ci left: 8.418309e-01	ci right 8.559652e-01	k: 8490	n:10000
HOXC12   10000 perm   1 sec   (6702 perm/sec)   p_kst 8.490000e-01   p_cons 1.273000e-01   p_joint 5.156000e-01

Joint ci ratio: 3.206735e-02	ci left: 4.207295e-01	ci right 4.344916e-01	k: 8552	n:20000
Cons ci ratio: 7.288606e-02	ci left: 1.217258e-01	ci right 1.309832e-01	k: 2526	n:20000
KS ci ratio: 1.161289e-02	ci left: 8.456849e-01	ci right 8.556129e-01	k: 17014	n:20000
HOXC12   20000 perm   3 sec   (5971 perm/sec)   p_kst 8.507000e-01   p_cons 1.263000e-01   p_joint 4.276000e-01

Outputting figure to mutsig2_images.part000000000080/HOXC12.3_857_20000_0.8507_0.1263_0.4276.png
                gene_name: HOXC12
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 68 percent done.
HOXC13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.356182e-01	ci left: 7.184865e-02	ci right 8.239926e-02	k: 770	n:10000
Cons ci ratio: 2.213733e-01	ci left: 2.702777e-02	ci right 3.384941e-02	k: 303	n:10000
KS ci ratio: 1.862839e-01	ci left: 3.843896e-02	ci right 4.643037e-02	k: 423	n:10000
HOXC13   10000 perm   2 sec   (6614 perm/sec)   p_kst 4.230000e-02   p_cons 3.030000e-02   p_joint 7.700000e-02

Joint ci ratio: 1.464120e-01	ci left: 3.206168e-02	ci right 3.717478e-02	k: 691	n:20000
Cons ci ratio: 1.534422e-01	ci left: 2.917075e-02	ci right 3.406667e-02	k: 631	n:20000
KS ci ratio: 1.322148e-01	ci left: 3.931020e-02	ci right 4.492391e-02	k: 841	n:20000
HOXC13   20000 perm   3 sec   (5863 perm/sec)   p_kst 4.205000e-02   p_cons 3.155000e-02   p_joint 3.455000e-02

Joint ci ratio: 1.496256e-01	ci left: 2.069096e-02	ci right 2.406909e-02	k: 670	n:30000
Cons ci ratio: 1.273824e-01	ci left: 2.864765e-02	ci right 3.257728e-02	k: 917	n:30000
KS ci ratio: 1.079092e-01	ci left: 3.985535e-02	ci right 4.443385e-02	k: 1263	n:30000
HOXC13   30000 perm   5 sec   (5544 perm/sec)   p_kst 4.210000e-02   p_cons 3.056667e-02   p_joint 2.233333e-02

Joint ci ratio: 1.181661e-01	ci left: 2.519071e-02	ci right 2.837849e-02	k: 1070	n:40000
Cons ci ratio: 1.094891e-01	ci left: 2.934747e-02	ci right 3.277106e-02	k: 1241	n:40000
KS ci ratio: 9.328885e-02	ci left: 4.029947e-02	ci right 4.426733e-02	k: 1690	n:40000
HOXC13   40000 perm   7 sec   (5389 perm/sec)   p_kst 4.225000e-02   p_cons 3.102500e-02   p_joint 2.675000e-02

Joint ci ratio: 1.469072e-01	ci left: 1.300773e-02	ci right 1.508925e-02	k: 701	n:50000
Cons ci ratio: 9.186040e-02	ci left: 3.352351e-02	ci right 3.677075e-02	k: 1756	n:50000
KS ci ratio: 8.339394e-02	ci left: 4.055242e-02	ci right 4.410097e-02	k: 2115	n:50000
HOXC13   50000 perm   10 sec   (5252 perm/sec)   p_kst 4.230000e-02   p_cons 3.512000e-02   p_joint 1.402000e-02

Joint ci ratio: 9.782028e-02	ci left: 2.479012e-02	ci right 2.735600e-02	k: 1563	n:60000
Cons ci ratio: 8.380328e-02	ci left: 3.370696e-02	ci right 3.667155e-02	k: 2110	n:60000
KS ci ratio: 7.603738e-02	ci left: 4.080153e-02	ci right 4.404292e-02	k: 2544	n:60000
HOXC13   60000 perm   12 sec   (5133 perm/sec)   p_kst 4.240000e-02   p_cons 3.516667e-02   p_joint 2.605000e-02

Outputting figure to mutsig2_images.part000000000080/HOXC13.3_1001_60000_0.0424_0.035167_0.02605.png
                gene_name: HOXC13
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.035 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 70 percent done.
HMOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.767943e-02	ci left: 5.098532e-01	ci right 5.295353e-01	k: 5197	n:10000
Cons ci ratio: 6.675595e-02	ci left: 2.477650e-01	ci right 2.649772e-01	k: 2563	n:10000
KS ci ratio: 3.864930e-02	ci left: 4.971503e-01	ci right 5.168456e-01	k: 5070	n:10000
HMOX1   10000 perm   1 sec   (7169 perm/sec)   p_kst 5.070000e-01   p_cons 2.563000e-01   p_joint 5.197000e-01

Outputting figure to mutsig2_images.part000000000080/HMOX1.2_887_10000_0.507_0.2563_0.5197.png
                gene_name: HMOX1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 72 percent done.
HMSD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.831063e-02	ci left: 5.015506e-01	ci right 5.212428e-01	k: 5114	n:10000
Cons ci ratio: 1.158652e-01	ci left: 9.671912e-02	ci right 1.087134e-01	k: 1026	n:10000
KS ci ratio: 2.251712e-02	ci left: 7.433121e-01	ci right 7.603410e-01	k: 7519	n:10000
HMSD   10000 perm   1 sec   (7141 perm/sec)   p_kst 7.519000e-01   p_cons 1.026000e-01   p_joint 5.114000e-01

Joint ci ratio: 2.514937e-02	ci left: 5.415215e-01	ci right 5.553644e-01	k: 10969	n:20000
Cons ci ratio: 8.060316e-02	ci left: 1.014715e-01	ci right 1.100435e-01	k: 2114	n:20000
KS ci ratio: 1.611414e-02	ci left: 7.413175e-01	ci right 7.534105e-01	k: 14948	n:20000
HMSD   20000 perm   3 sec   (6358 perm/sec)   p_kst 7.474000e-01   p_cons 1.057000e-01   p_joint 5.484500e-01

Outputting figure to mutsig2_images.part000000000080/HMSD.2_432_20000_0.7474_0.1057_0.54845.png
                gene_name: HMSD
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 75 percent done.
HNF1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.442098e-01	ci left: 6.381856e-02	ci right 7.383439e-02	k: 687	n:10000
Cons ci ratio: 8.170639e-02	ci left: 1.793999e-01	ci right 1.947829e-01	k: 1870	n:10000
KS ci ratio: 1.484236e-01	ci left: 6.034192e-02	ci right 7.011322e-02	k: 651	n:10000
HNF1A   10000 perm   2 sec   (6318 perm/sec)   p_kst 6.510000e-02   p_cons 1.870000e-01   p_joint 6.870000e-02

Joint ci ratio: 1.090359e-01	ci left: 5.738108e-02	ci right 6.404735e-02	k: 1213	n:20000
Cons ci ratio: 5.541051e-02	ci left: 1.945742e-01	ci right 2.057131e-01	k: 4002	n:20000
KS ci ratio: 1.025352e-01	ci left: 6.459783e-02	ci right 7.162836e-02	k: 1361	n:20000
HNF1A   20000 perm   3 sec   (5739 perm/sec)   p_kst 6.805000e-02   p_cons 2.001000e-01   p_joint 6.065000e-02

Joint ci ratio: 1.113082e-01	ci left: 3.748611e-02	ci right 4.193693e-02	k: 1190	n:30000
Cons ci ratio: 4.525446e-02	ci left: 1.955192e-01	ci right 2.046056e-01	k: 6001	n:30000
KS ci ratio: 8.354483e-02	ci left: 6.550338e-02	ci right 7.124721e-02	k: 2050	n:30000
HNF1A   30000 perm   5 sec   (5478 perm/sec)   p_kst 6.833333e-02   p_cons 2.000333e-01   p_joint 3.966667e-02

Joint ci ratio: 9.709861e-02	ci left: 3.724591e-02	ci right 4.107136e-02	k: 1565	n:40000
Cons ci ratio: 3.938755e-02	ci left: 1.945510e-01	ci right 2.023928e-01	k: 7938	n:40000
KS ci ratio: 7.191098e-02	ci left: 6.665796e-02	ci right 7.165481e-02	k: 2765	n:40000
HNF1A   40000 perm   8 sec   (5314 perm/sec)   p_kst 6.912500e-02   p_cons 1.984500e-01   p_joint 3.912500e-02

Outputting figure to mutsig2_images.part000000000080/HNF1A.2_1936_40000_0.069125_0.19845_0.039125.png
                gene_name: HNF1A
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.041 

Current progress: 78 percent done.
HNF1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.136044e-02	ci left: 6.000581e-01	ci right 6.192779e-01	k: 6097	n:10000
Cons ci ratio: 2.667321e-02	ci left: 6.742815e-01	ci right 6.926115e-01	k: 6835	n:10000
KS ci ratio: 3.829530e-02	ci left: 5.017506e-01	ci right 5.214426e-01	k: 5116	n:10000
HNF1B   10000 perm   2 sec   (6558 perm/sec)   p_kst 5.116000e-01   p_cons 6.835000e-01   p_joint 6.097000e-01

Outputting figure to mutsig2_images.part000000000080/HNF1B.2_1710_10000_0.5116_0.6835_0.6097.png
                gene_name: HNF1B
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 80 percent done.
HNF4G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.200770e-02	ci left: 2.203008e-01	ci right 2.368576e-01	k: 2285	n:10000
KS ci ratio: 5.000832e-02	ci left: 3.709701e-01	ci right 3.900995e-01	k: 3805	n:10000
HNF4G   10000 perm   1 sec   (6804 perm/sec)   p_kst 3.805000e-01   p_cons 2.285000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HNF4G.2_1378_10000_0.3805_0.2285_1.png
                gene_name: HNF4G
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
HNRNPA2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.185996e-02	ci left: 9.105972e-01	ci right 9.215590e-01	k: 9162	n:10000
Cons ci ratio: 1.315740e-02	ci left: 8.927222e-01	ci right 9.046444e-01	k: 8988	n:10000
KS ci ratio: 2.542912e-02	ci left: 6.947428e-01	ci right 7.127384e-01	k: 7038	n:10000
HNRNPA2B1   10000 perm   1 sec   (7052 perm/sec)   p_kst 7.038000e-01   p_cons 8.988000e-01   p_joint 9.162000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPA2B1.2_1106_10000_0.7038_0.8988_0.9162.png
                gene_name: HNRNPA2B1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 85 percent done.
HNRNPD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.448599e-02	ci left: 4.272478e-01	ci right 4.467889e-01	k: 4370	n:10000
KS ci ratio: 4.996592e-02	ci left: 3.713681e-01	ci right 3.905013e-01	k: 3809	n:10000
HNRNPD   10000 perm   1 sec   (6759 perm/sec)   p_kst 3.809000e-01   p_cons 4.370000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000080/HNRNPD.2_1100_10000_0.3809_0.437_1.png
                gene_name: HNRNPD
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
HNRNPUL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.817613e-03	ci left: 9.886188e-01	ci right 9.924873e-01	k: 9907	n:10000
Cons ci ratio: 3.610965e-02	ci left: 5.310723e-01	ci right 5.507039e-01	k: 5409	n:10000
KS ci ratio: 9.507050e-02	ci left: 1.383491e-01	ci right 1.522583e-01	k: 1452	n:10000
HNRNPUL2   10000 perm   2 sec   (6237 perm/sec)   p_kst 1.452000e-01   p_cons 5.409000e-01   p_joint 9.907000e-01

Outputting figure to mutsig2_images.part000000000080/HNRNPUL2.2_2300_10000_0.1452_0.5409_0.9907.png
                gene_name: HNRNPUL2
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 90 percent done.
HOXA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.232929e-01	ci left: 8.611301e-02	ci right 9.752607e-02	k: 917	n:10000
Cons ci ratio: 1.444354e-01	ci left: 6.362530e-02	ci right 7.362777e-02	k: 685	n:10000
KS ci ratio: 9.103792e-02	ci left: 1.492334e-01	ci right 1.635673e-01	k: 1563	n:10000
HOXA11   10000 perm   2 sec   (6348 perm/sec)   p_kst 1.563000e-01   p_cons 6.850000e-02   p_joint 9.170000e-02

Joint ci ratio: 3.868388e-02	ci left: 3.326374e-01	ci right 3.458094e-01	k: 6784	n:20000
Cons ci ratio: 1.026971e-01	ci left: 6.440262e-02	ci right 7.142363e-02	k: 1357	n:20000
KS ci ratio: 6.497890e-02	ci left: 1.489245e-01	ci right 1.589763e-01	k: 3078	n:20000
HOXA11   20000 perm   3 sec   (5905 perm/sec)   p_kst 1.539000e-01   p_cons 6.785000e-02   p_joint 3.392000e-01

Joint ci ratio: 6.033888e-02	ci left: 1.195995e-01	ci right 1.270736e-01	k: 3699	n:30000
Cons ci ratio: 8.378625e-02	ci left: 6.514386e-02	ci right 7.087347e-02	k: 2039	n:30000
KS ci ratio: 5.311311e-02	ci left: 1.495699e-01	ci right 1.577640e-01	k: 4609	n:30000
HOXA11   30000 perm   5 sec   (5692 perm/sec)   p_kst 1.536333e-01   p_cons 6.796667e-02   p_joint 1.233000e-01

Outputting figure to mutsig2_images.part000000000080/HOXA11.2_950_30000_0.15363_0.067967_0.1233.png
                gene_name: HOXA11
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 92 percent done.
HOXA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.083156e-01	ci left: 1.094933e-01	ci right 1.221314e-01	k: 1157	n:10000
Cons ci ratio: 7.251022e-03	ci left: 9.633100e-01	ci right 9.704146e-01	k: 9670	n:10000
KS ci ratio: 1.469819e-01	ci left: 6.150035e-02	ci right 7.135407e-02	k: 663	n:10000
HOXA2   10000 perm   1 sec   (7254 perm/sec)   p_kst 6.630000e-02   p_cons 9.670000e-01   p_joint 1.157000e-01

Joint ci ratio: 7.559769e-03	ci left: 9.271946e-01	ci right 9.342795e-01	k: 18616	n:20000
Cons ci ratio: 5.127897e-03	ci left: 9.643786e-01	ci right 9.693845e-01	k: 19339	n:20000
KS ci ratio: 1.039341e-01	ci left: 6.293881e-02	ci right 6.988790e-02	k: 1327	n:20000
HOXA2   20000 perm   3 sec   (6361 perm/sec)   p_kst 6.635000e-02   p_cons 9.669500e-01   p_joint 9.308000e-01

Joint ci ratio: 6.603514e-03	ci left: 9.184667e-01	ci right 9.245847e-01	k: 27647	n:30000
Cons ci ratio: 3.963837e-03	ci left: 9.682819e-01	ci right 9.721597e-01	k: 29108	n:30000
KS ci ratio: 8.571830e-02	ci left: 6.236657e-02	ci right 6.798467e-02	k: 1954	n:30000
HOXA2   30000 perm   5 sec   (6031 perm/sec)   p_kst 6.513333e-02   p_cons 9.702667e-01   p_joint 9.215667e-01

Outputting figure to mutsig2_images.part000000000080/HOXA2.2_1139_30000_0.065133_0.97027_0.92157.png
                gene_name: HOXA2
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.92 

Current progress: 95 percent done.
HOXB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.196689e-02	ci left: 2.204982e-01	ci right 2.370601e-01	k: 2287	n:10000
Cons ci ratio: 1.576595e-02	ci left: 8.538604e-01	ci right 8.675287e-01	k: 8608	n:10000
KS ci ratio: 2.847290e-01	ci left: 1.594989e-02	ci right 2.133572e-02	k: 185	n:10000
HOXB3   10000 perm   2 sec   (6580 perm/sec)   p_kst 1.850000e-02   p_cons 8.608000e-01   p_joint 2.287000e-01

Joint ci ratio: 4.840978e-02	ci left: 2.408864e-01	ci right 2.528873e-01	k: 4937	n:20000
Cons ci ratio: 1.111247e-02	ci left: 8.566859e-01	ci right 8.663087e-01	k: 17231	n:20000
KS ci ratio: 1.947721e-01	ci left: 1.791431e-02	ci right 2.182703e-02	k: 396	n:20000
HOXB3   20000 perm   3 sec   (5967 perm/sec)   p_kst 1.980000e-02   p_cons 8.615500e-01   p_joint 2.468500e-01

Joint ci ratio: 3.973668e-02	ci left: 2.400421e-01	ci right 2.498074e-01	k: 7347	n:30000
Cons ci ratio: 9.035636e-03	ci left: 8.585851e-01	ci right 8.664113e-01	k: 25876	n:30000
KS ci ratio: 1.572233e-01	ci left: 1.870206e-02	ci right 2.192512e-02	k: 608	n:30000
HOXB3   30000 perm   6 sec   (5401 perm/sec)   p_kst 2.026667e-02   p_cons 8.625333e-01   p_joint 2.449000e-01

Joint ci ratio: 3.449774e-02	ci left: 2.397972e-01	ci right 2.482399e-01	k: 9760	n:40000
Cons ci ratio: 7.834334e-03	ci left: 8.588338e-01	ci right 8.656135e-01	k: 34490	n:40000
KS ci ratio: 1.349770e-01	ci left: 1.925458e-02	ci right 2.206561e-02	k: 825	n:40000
HOXB3   40000 perm   8 sec   (5312 perm/sec)   p_kst 2.062500e-02   p_cons 8.622500e-01   p_joint 2.440000e-01

Joint ci ratio: 3.403676e-02	ci left: 2.060790e-01	ci right 2.132347e-01	k: 10482	n:50000
Cons ci ratio: 6.989186e-03	ci left: 8.598137e-01	ci right 8.658641e-01	k: 43143	n:50000
KS ci ratio: 1.210570e-01	ci left: 1.929524e-02	ci right 2.180086e-02	k: 1026	n:50000
HOXB3   50000 perm   10 sec   (5206 perm/sec)   p_kst 2.052000e-02   p_cons 8.628600e-01   p_joint 2.096400e-01

Joint ci ratio: 2.950770e-02	ci left: 2.239184e-01	ci right 2.306413e-01	k: 13636	n:60000
Cons ci ratio: 6.087533e-03	ci left: 8.709147e-01	ci right 8.762491e-01	k: 52416	n:60000
KS ci ratio: 1.108037e-01	ci left: 1.929999e-02	ci right 2.158006e-02	k: 1225	n:60000
HOXB3   60000 perm   12 sec   (5109 perm/sec)   p_kst 2.041667e-02   p_cons 8.736000e-01   p_joint 2.272667e-01

Joint ci ratio: 2.633772e-02	ci left: 2.372096e-01	ci right 2.435548e-01	k: 16826	n:70000
Cons ci ratio: 5.640673e-03	ci left: 8.709284e-01	ci right 8.758691e-01	k: 61139	n:70000
KS ci ratio: 1.021599e-01	ci left: 1.954660e-02	ci right 2.166483e-02	k: 1441	n:70000
HOXB3   70000 perm   14 sec   (5017 perm/sec)   p_kst 2.058571e-02   p_cons 8.734143e-01   p_joint 2.403714e-01

Joint ci ratio: 2.559512e-02	ci left: 2.238148e-01	ci right 2.296301e-01	k: 18137	n:80000
Cons ci ratio: 5.277584e-03	ci left: 8.710382e-01	ci right 8.756597e-01	k: 69869	n:80000
KS ci ratio: 9.612927e-02	ci left: 1.938276e-02	ci right 2.135224e-02	k: 1628	n:80000
HOXB3   80000 perm   16 sec   (4927 perm/sec)   p_kst 2.035000e-02   p_cons 8.733625e-01   p_joint 2.267125e-01

Outputting figure to mutsig2_images.part000000000080/HOXB3.2_1304_80000_0.02035_0.87336_0.22671.png
                gene_name: HOXB3
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 98 percent done.
HOXC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.214247e-02	ci left: 3.515781e-01	ci right 3.705029e-01	k: 3610	n:10000
Cons ci ratio: 6.749929e-02	ci left: 2.436126e-01	ci right 2.607320e-01	k: 2521	n:10000
KS ci ratio: 2.419615e-02	ci left: 7.152252e-01	ci right 7.328441e-01	k: 7241	n:10000
HOXC4   10000 perm   1 sec   (6796 perm/sec)   p_kst 7.241000e-01   p_cons 2.521000e-01   p_joint 3.610000e-01

Outputting figure to mutsig2_images.part000000000080/HOXC4.2_803_10000_0.7241_0.2521_0.361.png
                gene_name: HOXC4
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000080
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 80 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1651>
Subject: Job 9893970: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1651>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000081> was used as the working directory.
Started at Sat Oct  6 00:12:48 2012
Results reported at Sat Oct  6 00:22:30 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000081.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000081.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 81  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000081.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    612.09 sec.
    Max Memory :      3594 MB
    Max Swap   :      5995 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
81
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 81
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 81: processing genes 7213 - 7302
Calculating significance of each gene.
Using projection method.
7213	HOXC8	1
7214	HOXC9	6.264589e-01
7215	HOXD1	2.915702e-01
7216	HOXD10	5.239693e-01
7217	HOXD11	4.215020e-01
7218	HOXD12	6.458408e-01
7219	HOXD13	1
7220	HOXD3	8.469250e-01
7221	HOXD4	5.530316e-01
7222	HOXD8	6.954686e-01
7223	HOXD9	2.990279e-01
7224	HP	8.697244e-01
7225	HP1BP3	3.874543e-01
7226	HPCA	6.579193e-01
7227	HPCAL1	1
7228	HPCAL4	1
7229	HPD	3.499883e-01
7230	HPDL	1
7231	HPGD	1
7232	HPGDS	1
7233	HPN	1
7234	HPR	6.774126e-01
7235	HPRT1	1.483247e-01
7236	HPS1	2.877796e-01
7237	HPS3	6.248268e-01
7238	HPS4	1
7239	HPS5	9.464279e-01
7240	HPS6	3.350233e-01
7241	HPSE	7.660934e-01
7242	HPSE2	3.353080e-02
7243	HPX	8.485427e-01
7244	HR	9.245602e-01
7245	HRAS	1
7246	HRASLS	8.172659e-02
7247	HRASLS2	5.837979e-01
7248	HRASLS5	2.700732e-01
7249	HRC	6.024702e-02
7250	HRCT1	1
7251	HRG	4.830684e-02
7252	HRH1	9.281046e-01
7253	HRH2	3.378494e-01
7254	HRH3	1
7255	HRH4	3.927214e-01
7256	HRNR	8.387755e-03
7257	HRSP12	5.205974e-02
7258	HS1BP3	8.494384e-01
7259	HS2ST1	1.506873e-01
7260	HS3ST1	8.156198e-01
7261	HS3ST2	1.778757e-01
7262	HS3ST3A1	1
7263	HS3ST3B1	5.817712e-01
7264	HS3ST4	3.068590e-02
7265	HS3ST5	1.036605e-01
7266	HS3ST6	1
7267	HS6ST1	1
7268	HS6ST2	7.233858e-01
7269	HS6ST3	5.307830e-01
7270	HSBP1	1
7271	HSCB	1
7272	HSD11B1	6.473687e-01
7273	HSD11B1L	1
7274	HSD11B2	1
7275	HSD17B1	1
7276	HSD17B10	1.965261e-01
7277	HSD17B11	1
In gene HSD17B12 the following bins exceed PROBCAP:
    COAD-AA-A01I	categ 6	N = 983     n = 1	mu =   3.29e-07
7278	HSD17B12	2.752765e-01
7279	HSD17B13	4.922877e-01
7280	HSD17B14	5.381415e-01
7281	HSD17B2	5.906521e-01
7282	HSD17B3	3.127573e-01
7283	HSD17B4	6.853064e-01
7284	HSD17B6	3.096328e-01
7285	HSD17B7	1
7286	HSD17B8	6.658477e-01
7287	HSD3B1	2.251600e-01
7288	HSD3B2	8.798872e-01
7289	HSD3B7	7.163747e-01
7290	HSDL1	4.489245e-01
7291	HSDL2	8.114070e-01
7292	HSF1	2.686519e-01
7293	HSF2	3.711304e-01
7294	HSF2BP	2.312472e-01
7295	HSF4	6.316972e-01
7296	HSF5	6.492038e-01
7297	HSH2D	4.593513e-01
7298	HSP90AA1	8.394406e-01
7299	HSP90AB1	9.088637e-01
7300	HSP90B1	8.283288e-01
7301	HSPA12A	8.095072e-01
7302	HSPA12B	9.416281e-01
Done

Running MutSig 2:
Scatter job 81: processing genes 7213 - 7302
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HRNR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.308563e-02	ci left: 4.430089e-01	ci right 4.626186e-01	k: 4528	n:10000
Cons ci ratio: 1.575280e-02	ci left: 8.540644e-01	ci right 8.677246e-01	k: 8610	n:10000
KS ci ratio: 7.260489e-02	ci left: 2.174386e-01	ci right 2.339215e-01	k: 2256	n:10000
HRNR   10000 perm   3 sec   (3450 perm/sec)   p_kst 2.256000e-01   p_cons 8.610000e-01   p_joint 4.528000e-01

Outputting figure to mutsig2_images.part000000000081/HRNR.16_8561_10000_0.2256_0.861_0.4528.png
                gene_name: HRNR
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 2 percent done.
HPSE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.662210e-02	ci left: 3.147305e-01	ci right 3.331722e-01	k: 3239	n:10000
Cons ci ratio: 6.516600e-02	ci left: 2.569630e-01	ci right 2.743737e-01	k: 2656	n:10000
KS ci ratio: 4.895376e-02	ci left: 3.810207e-01	ci right 4.002431e-01	k: 3906	n:10000
HPSE2   10000 perm   2 sec   (5172 perm/sec)   p_kst 3.906000e-01   p_cons 2.656000e-01   p_joint 3.239000e-01

Outputting figure to mutsig2_images.part000000000081/HPSE2.12_1865_10000_0.3906_0.2656_0.3239.png
                gene_name: HPSE2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 4 percent done.
HRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.502819e-02	ci left: 8.651913e-01	ci right 8.783912e-01	k: 8719	n:10000
KS ci ratio: 2.471742e-02	ci left: 7.065452e-01	ci right 7.243291e-01	k: 7155	n:10000
HRG   10000 perm   2 sec   (5726 perm/sec)   p_kst 7.155000e-01   p_cons 8.719000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HRG.9_1606_10000_0.7155_0.8719_1.png
                gene_name: HRG
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
HRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.508199e-02	ci left: 7.004918e-01	ci right 7.183861e-01	k: 7095	n:10000
Cons ci ratio: 2.634093e-02	ci left: 6.797224e-01	ci right 6.979674e-01	k: 6889	n:10000
KS ci ratio: 4.052554e-02	ci left: 4.734617e-01	ci right 4.931480e-01	k: 4833	n:10000
HRC   10000 perm   2 sec   (5555 perm/sec)   p_kst 4.833000e-01   p_cons 6.889000e-01   p_joint 7.095000e-01

Outputting figure to mutsig2_images.part000000000081/HRC.6_2124_10000_0.4833_0.6889_0.7095.png
                gene_name: HRC
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 8 percent done.
HPS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.528895e-02	ci left: 6.970623e-01	ci right 7.150175e-01	k: 7061	n:10000
Cons ci ratio: 1.809928e-02	ci left: 8.166970e-01	ci right 8.317137e-01	k: 8243	n:10000
KS ci ratio: 3.032889e-02	ci left: 6.159285e-01	ci right 6.349984e-01	k: 6255	n:10000
HPS3   10000 perm   2 sec   (4977 perm/sec)   p_kst 6.255000e-01   p_cons 8.243000e-01   p_joint 7.061000e-01

Outputting figure to mutsig2_images.part000000000081/HPS3.5_3083_10000_0.6255_0.8243_0.7061.png
                gene_name: HPS3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 10 percent done.
HS3ST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.784492e-02	ci left: 1.314920e-01	ci right 1.451194e-01	k: 1382	n:10000
Cons ci ratio: 9.423735e-02	ci left: 1.405053e-01	ci right 1.545008e-01	k: 1474	n:10000
KS ci ratio: 9.580454e-02	ci left: 1.364873e-01	ci right 1.503211e-01	k: 1433	n:10000
HS3ST4   10000 perm   2 sec   (5565 perm/sec)   p_kst 1.433000e-01   p_cons 1.474000e-01   p_joint 1.382000e-01

Outputting figure to mutsig2_images.part000000000081/HS3ST4.5_1379_10000_0.1433_0.1474_0.1382.png
                gene_name: HS3ST4
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.15 

Current progress: 12 percent done.
HSP90B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.609581e-02	ci left: 1.642567e-01	ci right 1.791350e-01	k: 1716	n:10000
Cons ci ratio: 2.572823e-02	ci left: 6.898019e-01	ci right 7.078821e-01	k: 6989	n:10000
KS ci ratio: 1.407264e-01	ci left: 6.691220e-02	ci right 7.713880e-02	k: 719	n:10000
HSP90B1   10000 perm   2 sec   (5360 perm/sec)   p_kst 7.190000e-02   p_cons 6.989000e-01   p_joint 1.716000e-01

Joint ci ratio: 6.371186e-02	ci left: 1.540556e-01	ci right 1.642437e-01	k: 3182	n:20000
Cons ci ratio: 1.825147e-02	ci left: 6.911309e-01	ci right 7.039116e-01	k: 13951	n:20000
KS ci ratio: 9.841040e-02	ci left: 6.987174e-02	ci right 7.715284e-02	k: 1469	n:20000
HSP90B1   20000 perm   4 sec   (4827 perm/sec)   p_kst 7.345000e-02   p_cons 6.975500e-01   p_joint 1.591000e-01

Outputting figure to mutsig2_images.part000000000081/HSP90B1.5_2484_20000_0.07345_0.69755_0.1591.png
                gene_name: HSP90B1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 14 percent done.
HP1BP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.187670e-02	ci left: 5.922273e-01	ci right 6.115133e-01	k: 6019	n:10000
KS ci ratio: 3.152538e-02	ci left: 5.975480e-01	ci right 6.167896e-01	k: 6072	n:10000
HP1BP3   10000 perm   2 sec   (6049 perm/sec)   p_kst 6.072000e-01   p_cons 6.019000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HP1BP3.4_1710_10000_0.6072_0.6019_1.png
                gene_name: HP1BP3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
HPD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.124631e-02	ci left: 2.816139e-01	ci right 2.995082e-01	k: 2905	n:10000
Cons ci ratio: 1.059408e-02	ci left: 9.268889e-01	ci right 9.368578e-01	k: 9320	n:10000
KS ci ratio: 8.360851e-02	ci left: 1.726124e-01	ci right 1.877744e-01	k: 1801	n:10000
HPD   10000 perm   2 sec   (5936 perm/sec)   p_kst 1.801000e-01   p_cons 9.320000e-01   p_joint 2.905000e-01

Outputting figure to mutsig2_images.part000000000081/HPD.4_1238_10000_0.1801_0.932_0.2905.png
                gene_name: HPD
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 18 percent done.
HPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.228335e-03	ci left: 9.635202e-01	ci right 9.706043e-01	k: 9672	n:10000
KS ci ratio: 2.141821e-02	ci left: 7.617251e-01	ci right 7.783173e-01	k: 7701	n:10000
HPS1   10000 perm   2 sec   (5562 perm/sec)   p_kst 7.701000e-01   p_cons 9.672000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HPS1.4_2213_10000_0.7701_0.9672_1.png
                gene_name: HPS1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
HPS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.969865e-02	ci left: 7.904003e-01	ci right 8.062255e-01	k: 7984	n:10000
Cons ci ratio: 4.102367e-02	ci left: 4.673682e-01	ci right 4.870451e-01	k: 4772	n:10000
KS ci ratio: 3.228391e-02	ci left: 5.861050e-01	ci right 6.054392e-01	k: 5958	n:10000
HPS6   10000 perm   2 sec   (5527 perm/sec)   p_kst 5.958000e-01   p_cons 4.772000e-01   p_joint 7.984000e-01

Outputting figure to mutsig2_images.part000000000081/HPS6.4_2332_10000_0.5958_0.4772_0.7984.png
                gene_name: HPS6
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 22 percent done.
HRH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.154889e-02	ci left: 3.568471e-01	ci right 3.758308e-01	k: 3663	n:10000
Cons ci ratio: 8.307477e-02	ci left: 1.744810e-01	ci right 1.897046e-01	k: 1820	n:10000
KS ci ratio: 5.844174e-02	ci left: 3.011400e-01	ci right 3.193706e-01	k: 3102	n:10000
HRH2   10000 perm   2 sec   (6370 perm/sec)   p_kst 3.102000e-01   p_cons 1.820000e-01   p_joint 3.663000e-01

Outputting figure to mutsig2_images.part000000000081/HRH2.4_1206_10000_0.3102_0.182_0.3663.png
                gene_name: HRH2
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 24 percent done.
HS2ST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.732451e-01	ci left: 4.446748e-02	ci right 5.299787e-02	k: 486	n:10000
Cons ci ratio: 2.442917e-01	ci left: 2.202897e-02	ci right 2.825186e-02	k: 250	n:10000
KS ci ratio: 5.705138e-02	ci left: 3.114560e-01	ci right 3.298486e-01	k: 3206	n:10000
HS2ST1   10000 perm   2 sec   (6096 perm/sec)   p_kst 3.206000e-01   p_cons 2.500000e-02   p_joint 4.860000e-02

Joint ci ratio: 8.495935e-02	ci left: 9.209831e-02	ci right 1.003195e-01	k: 1923	n:20000
Cons ci ratio: 1.756369e-01	ci left: 2.216252e-02	ci right 2.647729e-02	k: 485	n:20000
KS ci ratio: 4.021682e-02	ci left: 3.155257e-01	ci right 3.285261e-01	k: 6440	n:20000
HS2ST1   20000 perm   4 sec   (5393 perm/sec)   p_kst 3.220000e-01   p_cons 2.425000e-02   p_joint 9.615000e-02

Joint ci ratio: 6.959649e-02	ci left: 9.229527e-02	ci right 9.898328e-02	k: 2868	n:30000
Cons ci ratio: 1.438130e-01	ci left: 2.242630e-02	ci right 2.593335e-02	k: 724	n:30000
KS ci ratio: 3.286074e-02	ci left: 3.164148e-01	ci right 3.270197e-01	k: 9651	n:30000
HS2ST1   30000 perm   6 sec   (5122 perm/sec)   p_kst 3.217000e-01   p_cons 2.413333e-02   p_joint 9.560000e-02

Joint ci ratio: 5.120868e-02	ci left: 1.244933e-01	ci right 1.310608e-01	k: 5110	n:40000
Cons ci ratio: 1.235457e-01	ci left: 2.303133e-02	ci right 2.608822e-02	k: 981	n:40000
KS ci ratio: 2.843272e-02	ci left: 3.175213e-01	ci right 3.267046e-01	k: 12884	n:40000
HS2ST1   40000 perm   8 sec   (4946 perm/sec)   p_kst 3.221000e-01   p_cons 2.452500e-02   p_joint 1.277500e-01

Joint ci ratio: 4.327697e-02	ci left: 1.379010e-01	ci right 1.440208e-01	k: 7047	n:50000
Cons ci ratio: 1.100215e-01	ci left: 2.339613e-02	ci right 2.613943e-02	k: 1237	n:50000
KS ci ratio: 2.554704e-02	ci left: 3.160314e-01	ci right 3.242295e-01	k: 16006	n:50000
HS2ST1   50000 perm   10 sec   (4816 perm/sec)   p_kst 3.201200e-01   p_cons 2.474000e-02   p_joint 1.409400e-01

Joint ci ratio: 4.371383e-02	ci left: 1.155939e-01	ci right 1.207764e-01	k: 7090	n:60000
Cons ci ratio: 1.001800e-01	ci left: 2.363537e-02	ci right 2.614421e-02	k: 1492	n:60000
KS ci ratio: 2.338954e-02	ci left: 3.151215e-01	ci right 3.225960e-01	k: 19131	n:60000
HS2ST1   60000 perm   13 sec   (4701 perm/sec)   p_kst 3.188500e-01   p_cons 2.486667e-02   p_joint 1.181667e-01

Joint ci ratio: 4.286013e-02	ci left: 1.044504e-01	ci right 1.090394e-01	k: 7471	n:70000
Cons ci ratio: 9.312870e-02	ci left: 2.353488e-02	ci right 2.584760e-02	k: 1727	n:70000
KS ci ratio: 2.183719e-02	ci left: 3.117731e-01	ci right 3.186708e-01	k: 22065	n:70000
HS2ST1   70000 perm   15 sec   (4600 perm/sec)   p_kst 3.152143e-01   p_cons 2.467143e-02   p_joint 1.067286e-01

Outputting figure to mutsig2_images.part000000000081/HS2ST1.4_1103_70000_0.31521_0.024671_0.10673.png
                gene_name: HS2ST1
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 27 percent done.
HS3ST5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.073996e-02	ci left: 7.730669e-01	ci right 7.893690e-01	k: 7813	n:10000
Cons ci ratio: 5.389372e-02	ci left: 3.365732e-01	ci right 3.553166e-01	k: 3459	n:10000
KS ci ratio: 1.915886e-02	ci left: 7.993290e-01	ci right 8.148917e-01	k: 8072	n:10000
HS3ST5   10000 perm   2 sec   (6371 perm/sec)   p_kst 8.072000e-01   p_cons 3.459000e-01   p_joint 7.813000e-01

Outputting figure to mutsig2_images.part000000000081/HS3ST5.4_1049_10000_0.8072_0.3459_0.7813.png
                gene_name: HS3ST5
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 29 percent done.
HOXD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.379027e-02	ci left: 1.416816e-01	ci right 1.557237e-01	k: 1486	n:10000
Cons ci ratio: 5.541639e-02	ci left: 3.241598e-01	ci right 3.427373e-01	k: 3334	n:10000
KS ci ratio: 7.830018e-02	ci left: 1.924939e-01	ci right 2.082810e-01	k: 2003	n:10000
HOXD1   10000 perm   2 sec   (6350 perm/sec)   p_kst 2.003000e-01   p_cons 3.334000e-01   p_joint 1.486000e-01

Outputting figure to mutsig2_images.part000000000081/HOXD1.3_995_10000_0.2003_0.3334_0.1486.png
                gene_name: HOXD1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 31 percent done.
HOXD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919412e-02	ci left: 4.901514e-01	ci right 5.098486e-01	k: 5000	n:10000
Cons ci ratio: 2.906652e-02	ci left: 6.357313e-01	ci right 6.545841e-01	k: 6452	n:10000
KS ci ratio: 5.874346e-02	ci left: 2.989585e-01	ci right 3.171535e-01	k: 3080	n:10000
HOXD9   10000 perm   2 sec   (6335 perm/sec)   p_kst 3.080000e-01   p_cons 6.452000e-01   p_joint 5.000000e-01

Outputting figure to mutsig2_images.part000000000081/HOXD9.3_1067_10000_0.308_0.6452_0.5.png
                gene_name: HOXD9
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 33 percent done.
HPS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.185675e-02	ci left: 5.925284e-01	ci right 6.118120e-01	k: 6022	n:10000
Cons ci ratio: 7.700481e-02	ci left: 1.978142e-01	ci right 2.137576e-01	k: 2057	n:10000
KS ci ratio: 3.618240e-02	ci left: 5.300710e-01	ci right 5.497057e-01	k: 5399	n:10000
HPS5   10000 perm   2 sec   (5435 perm/sec)   p_kst 5.399000e-01   p_cons 2.057000e-01   p_joint 6.022000e-01

Outputting figure to mutsig2_images.part000000000081/HPS5.3_3478_10000_0.5399_0.2057_0.6022.png
                gene_name: HPS5
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 35 percent done.
HRSP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.537902e-02	ci left: 3.244576e-01	ci right 3.430393e-01	k: 3337	n:10000
Cons ci ratio: 3.082280e-02	ci left: 6.082933e-01	ci right 6.274380e-01	k: 6179	n:10000
KS ci ratio: 5.775266e-02	ci left: 3.061982e-01	ci right 3.245095e-01	k: 3153	n:10000
HRSP12   10000 perm   1 sec   (6744 perm/sec)   p_kst 3.153000e-01   p_cons 6.179000e-01   p_joint 3.337000e-01

Outputting figure to mutsig2_images.part000000000081/HRSP12.3_438_10000_0.3153_0.6179_0.3337.png
                gene_name: HRSP12
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 37 percent done.
HS3ST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.473410e-01	ci left: 2.146516e-02	ci right 2.761609e-02	k: 244	n:10000
Cons ci ratio: 4.737275e-01	ci left: 5.196070e-03	ci right 8.501060e-03	k: 67	n:10000
KS ci ratio: 1.907883e-02	ci left: 8.006485e-01	ci right 8.161714e-01	k: 8085	n:10000
HS3ST2   10000 perm   2 sec   (6293 perm/sec)   p_kst 8.085000e-01   p_cons 6.700000e-03   p_joint 2.440000e-02

Joint ci ratio: 1.654508e-01	ci left: 2.503753e-02	ci right 2.960129e-02	k: 545	n:20000
Cons ci ratio: 3.509248e-01	ci left: 5.113783e-03	ci right 7.333458e-03	k: 123	n:20000
KS ci ratio: 1.354921e-02	ci left: 8.016126e-01	ci right 8.125980e-01	k: 16143	n:20000
HS3ST2   20000 perm   4 sec   (5555 perm/sec)   p_kst 8.071500e-01   p_cons 6.150000e-03   p_joint 2.725000e-02

Joint ci ratio: 6.772008e-02	ci left: 9.705419e-02	ci right 1.038901e-01	k: 3013	n:30000
Cons ci ratio: 2.769537e-01	ci left: 5.715107e-03	ci right 7.582366e-03	k: 198	n:30000
KS ci ratio: 1.042867e-02	ci left: 8.205177e-01	ci right 8.291527e-01	k: 24746	n:30000
HS3ST2   30000 perm   6 sec   (5294 perm/sec)   p_kst 8.248667e-01   p_cons 6.600000e-03   p_joint 1.004333e-01

Joint ci ratio: 6.147335e-02	ci left: 8.943131e-02	ci right 9.512804e-02	k: 3690	n:40000
Cons ci ratio: 2.390951e-01	ci left: 5.876993e-03	ci right 7.495874e-03	k: 266	n:40000
KS ci ratio: 9.055387e-03	ci left: 8.203329e-01	ci right 8.278200e-01	k: 32964	n:40000
HS3ST2   40000 perm   8 sec   (5118 perm/sec)   p_kst 8.241000e-01   p_cons 6.650000e-03   p_joint 9.225000e-02

Joint ci ratio: 4.167576e-02	ci left: 1.471978e-01	ci right 1.534828e-01	k: 7516	n:50000
Cons ci ratio: 2.150735e-01	ci left: 5.890100e-03	ci right 7.328084e-03	k: 329	n:50000
KS ci ratio: 8.150705e-03	ci left: 8.188804e-01	ci right 8.256021e-01	k: 41113	n:50000
HS3ST2   50000 perm   10 sec   (4969 perm/sec)   p_kst 8.222600e-01   p_cons 6.580000e-03   p_joint 1.503200e-01

Joint ci ratio: 4.173230e-02	ci left: 1.255182e-01	ci right 1.308845e-01	k: 7691	n:60000
Cons ci ratio: 1.946106e-01	ci left: 6.062863e-03	ci right 7.385528e-03	k: 402	n:60000
KS ci ratio: 7.442052e-03	ci left: 8.191168e-01	ci right 8.252520e-01	k: 49332	n:60000
HS3ST2   60000 perm   12 sec   (4841 perm/sec)   p_kst 8.222000e-01   p_cons 6.700000e-03   p_joint 1.281833e-01

Joint ci ratio: 4.245102e-02	ci left: 1.062759e-01	ci right 1.108994e-01	k: 7600	n:70000
Cons ci ratio: 1.788706e-01	ci left: 6.204576e-03	ci right 7.436839e-03	k: 476	n:70000
KS ci ratio: 6.899413e-03	ci left: 8.189446e-01	ci right 8.246287e-01	k: 57526	n:70000
HS3ST2   70000 perm   15 sec   (4725 perm/sec)   p_kst 8.218000e-01   p_cons 6.800000e-03   p_joint 1.085714e-01

Joint ci ratio: 3.966543e-02	ci left: 1.066378e-01	ci right 1.109656e-01	k: 8703	n:80000
Cons ci ratio: 1.662686e-01	ci left: 6.326087e-03	ci right 7.485106e-03	k: 551	n:80000
KS ci ratio: 6.439751e-03	ci left: 8.197715e-01	ci right 8.250801e-01	k: 65795	n:80000
HS3ST2   80000 perm   17 sec   (4617 perm/sec)   p_kst 8.224375e-01   p_cons 6.887500e-03   p_joint 1.087875e-01

Joint ci ratio: 3.492133e-02	ci left: 1.206624e-01	ci right 1.249620e-01	k: 11052	n:90000
Cons ci ratio: 1.579161e-01	ci left: 6.262807e-03	ci right 7.347126e-03	k: 611	n:90000
KS ci ratio: 6.066224e-03	ci left: 8.201777e-01	ci right 8.251793e-01	k: 74042	n:90000
HS3ST2   90000 perm   20 sec   (4521 perm/sec)   p_kst 8.226889e-01   p_cons 6.788889e-03   p_joint 1.228000e-01

Joint ci ratio: 3.372222e-02	ci left: 1.170290e-01	ci right 1.210531e-01	k: 11903	n:100000
Cons ci ratio: 1.494808e-01	ci left: 6.319247e-03	ci right 7.349670e-03	k: 682	n:100000
KS ci ratio: 5.750953e-03	ci left: 8.205095e-01	ci right 8.252518e-01	k: 82289	n:100000
HS3ST2   100000 perm   23 sec   (4435 perm/sec)   p_kst 8.228900e-01   p_cons 6.820000e-03   p_joint 1.190300e-01

Joint ci ratio: 3.550784e-02	ci left: 9.797161e-02	ci right 1.015223e-01	k: 10971	n:110000
Cons ci ratio: 1.428406e-01	ci left: 6.314075e-03	ci right 7.294019e-03	k: 747	n:110000
KS ci ratio: 5.479877e-03	ci left: 8.208046e-01	ci right 8.253238e-01	k: 90538	n:110000
HS3ST2   110000 perm   25 sec   (4354 perm/sec)   p_kst 8.230727e-01   p_cons 6.790909e-03   p_joint 9.973636e-02

Joint ci ratio: 2.967880e-02	ci left: 1.250381e-01	ci right 1.288133e-01	k: 15230	n:120000
Cons ci ratio: 1.368440e-01	ci left: 6.326708e-03	ci right 7.264032e-03	k: 814	n:120000
KS ci ratio: 5.229869e-03	ci left: 8.218334e-01	ci right 8.261510e-01	k: 98880	n:120000
HS3ST2   120000 perm   28 sec   (4276 perm/sec)   p_kst 8.240000e-01   p_cons 6.783333e-03   p_joint 1.269167e-01

Joint ci ratio: 3.136179e-02	ci left: 1.055996e-01	ci right 1.089718e-01	k: 13946	n:130000
Cons ci ratio: 1.319970e-01	ci left: 6.293484e-03	ci right 7.190269e-03	k: 875	n:130000
KS ci ratio: 5.023094e-03	ci left: 8.220115e-01	ci right 8.261586e-01	k: 107132	n:130000
HS3ST2   130000 perm   31 sec   (4201 perm/sec)   p_kst 8.240923e-01   p_cons 6.730769e-03   p_joint 1.072769e-01

Joint ci ratio: 2.935867e-02	ci left: 1.112964e-01	ci right 1.146197e-01	k: 15813	n:140000
Cons ci ratio: 1.274259e-01	ci left: 6.286259e-03	ci right 7.148648e-03	k: 939	n:140000
KS ci ratio: 4.837024e-03	ci left: 8.222891e-01	ci right 8.262832e-01	k: 115401	n:140000
HS3ST2   140000 perm   34 sec   (4129 perm/sec)   p_kst 8.242929e-01   p_cons 6.707143e-03   p_joint 1.129500e-01

Joint ci ratio: 2.843851e-02	ci left: 1.108256e-01	ci right 1.140294e-01	k: 16863	n:150000
Cons ci ratio: 1.230524e-01	ci left: 6.306311e-03	ci right 7.139594e-03	k: 1007	n:150000
KS ci ratio: 4.670849e-03	ci left: 8.224917e-01	ci right 8.263491e-01	k: 123664	n:150000
HS3ST2   150000 perm   37 sec   (4061 perm/sec)   p_kst 8.244267e-01   p_cons 6.713333e-03   p_joint 1.124200e-01

Joint ci ratio: 2.769030e-02	ci left: 1.097691e-01	ci right 1.128575e-01	k: 17809	n:160000
Cons ci ratio: 1.191562e-01	ci left: 6.318235e-03	ci right 7.124796e-03	k: 1074	n:160000
KS ci ratio: 4.525874e-03	ci left: 8.223384e-01	ci right 8.260748e-01	k: 131874	n:160000
HS3ST2   160000 perm   40 sec   (3995 perm/sec)   p_kst 8.242125e-01   p_cons 6.712500e-03   p_joint 1.113062e-01

Joint ci ratio: 2.673267e-02	ci left: 1.107794e-01	ci right 1.137868e-01	k: 19087	n:170000
Cons ci ratio: 1.157612e-01	ci left: 6.311983e-03	ci right 7.093218e-03	k: 1138	n:170000
KS ci ratio: 4.396011e-03	ci left: 8.220454e-01	ci right 8.256729e-01	k: 140057	n:170000
HS3ST2   170000 perm   43 sec   (3924 perm/sec)   p_kst 8.238647e-01   p_cons 6.694118e-03   p_joint 1.122765e-01

Joint ci ratio: 2.648316e-02	ci left: 1.070723e-01	ci right 1.099514e-01	k: 19531	n:180000
Cons ci ratio: 1.134988e-01	ci left: 6.209526e-03	ci right 6.962053e-03	k: 1184	n:180000
KS ci ratio: 4.271879e-03	ci left: 8.221156e-01	ci right 8.256406e-01	k: 148299	n:180000
HS3ST2   180000 perm   47 sec   (3843 perm/sec)   p_kst 8.238833e-01   p_cons 6.577778e-03   p_joint 1.085056e-01

Joint ci ratio: 2.581413e-02	ci left: 1.068328e-01	ci right 1.096318e-01	k: 20563	n:190000
Cons ci ratio: 1.107319e-01	ci left: 6.189640e-03	ci right 6.920275e-03	k: 1244	n:190000
KS ci ratio: 4.160794e-03	ci left: 8.219631e-01	ci right 8.253954e-01	k: 156500	n:190000
HS3ST2   190000 perm   50 sec   (3789 perm/sec)   p_kst 8.236842e-01   p_cons 6.547368e-03   p_joint 1.082263e-01

Joint ci ratio: 2.771419e-02	ci left: 8.967339e-02	ci right 9.219848e-02	k: 18186	n:200000
Cons ci ratio: 1.078671e-01	ci left: 6.206002e-03	ci right 6.918413e-03	k: 1311	n:200000
KS ci ratio: 4.057452e-03	ci left: 8.218621e-01	ci right 8.252085e-01	k: 164708	n:200000
HS3ST2   200000 perm   54 sec   (3735 perm/sec)   p_kst 8.235400e-01   p_cons 6.555000e-03   p_joint 9.093000e-02

Joint ci ratio: 3.621196e-02	ci left: 5.189453e-02	ci right 5.381308e-02	k: 11098	n:210000
Cons ci ratio: 1.058726e-01	ci left: 6.142199e-03	ci right 6.833435e-03	k: 1361	n:210000
KS ci ratio: 3.963974e-03	ci left: 8.215854e-01	ci right 8.248533e-01	k: 172877	n:210000
HS3ST2   210000 perm   57 sec   (3682 perm/sec)   p_kst 8.232238e-01   p_cons 6.480952e-03   p_joint 5.284762e-02

Joint ci ratio: 3.537381e-02	ci left: 5.193224e-02	ci right 5.380684e-02	k: 11630	n:220000
Cons ci ratio: 1.034697e-01	ci left: 6.146302e-03	ci right 6.821346e-03	k: 1425	n:220000
KS ci ratio: 3.878897e-03	ci left: 8.211660e-01	ci right 8.243619e-01	k: 181009	n:220000
HS3ST2   220000 perm   61 sec   (3632 perm/sec)   p_kst 8.227682e-01   p_cons 6.477273e-03   p_joint 5.286364e-02

Joint ci ratio: 2.560863e-02	ci left: 9.127134e-02	ci right 9.364329e-02	k: 21264	n:230000
Cons ci ratio: 1.008155e-01	ci left: 6.201074e-03	ci right 6.863628e-03	k: 1501	n:230000
KS ci ratio: 3.793900e-03	ci left: 8.211809e-01	ci right 8.243066e-01	k: 189232	n:230000
HS3ST2   230000 perm   64 sec   (3584 perm/sec)   p_kst 8.227478e-01   p_cons 6.526087e-03   p_joint 9.245217e-02

Joint ci ratio: 2.545335e-02	ci left: 8.879164e-02	ci right 9.108494e-02	k: 21584	n:240000
Cons ci ratio: 9.940736e-02	ci left: 6.117363e-03	ci right 6.761311e-03	k: 1544	n:240000
KS ci ratio: 3.715689e-03	ci left: 8.210824e-01	ci right 8.241431e-01	k: 197428	n:240000
HS3ST2   240000 perm   68 sec   (3538 perm/sec)   p_kst 8.226167e-01   p_cons 6.433333e-03   p_joint 8.993333e-02

Outputting figure to mutsig2_images.part000000000081/HS3ST2.3_1112_240000_0.82262_0.0064333_0.089933.png
                gene_name: HS3ST2
               theta_stop: 0.099 
                    nperm: 240000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.0064 
      ci_cons_bounds_left: 0.0061 
     ci_cons_bounds_right: 0.0068 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.091 

Current progress: 39 percent done.
HSD17B14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.894940e-02	ci left: 8.027803e-01	ci right 8.182384e-01	k: 8106	n:10000
KS ci ratio: 1.259363e-02	ci left: 9.006249e-01	ci right 9.121371e-01	k: 9065	n:10000
HSD17B14   10000 perm   2 sec   (6602 perm/sec)   p_kst 9.065000e-01   p_cons 8.106000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HSD17B14.3_849_10000_0.9065_0.8106_1.png
                gene_name: HSD17B14
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
HSD17B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.202174e-01	ci left: 9.029438e-02	ci right 1.019421e-01	k: 960	n:10000
Cons ci ratio: 1.353006e-02	ci left: 8.873914e-01	ci right 8.995783e-01	k: 8936	n:10000
KS ci ratio: 2.318040e-01	ci left: 2.457161e-02	ci right 3.110733e-02	k: 277	n:10000
HSD17B4   10000 perm   2 sec   (5677 perm/sec)   p_kst 2.770000e-02   p_cons 8.936000e-01   p_joint 9.600000e-02

Joint ci ratio: 9.758882e-02	ci left: 7.099564e-02	ci right 7.832859e-02	k: 1492	n:20000
Cons ci ratio: 9.548330e-03	ci left: 8.896004e-01	ci right 8.981847e-01	k: 17879	n:20000
KS ci ratio: 1.654508e-01	ci left: 2.503753e-02	ci right 2.960129e-02	k: 545	n:20000
HSD17B4   20000 perm   4 sec   (5075 perm/sec)   p_kst 2.725000e-02   p_cons 8.939500e-01   p_joint 7.460000e-02

Joint ci ratio: 9.205290e-02	ci left: 5.437022e-02	ci right 5.964931e-02	k: 1709	n:30000
Cons ci ratio: 7.781440e-03	ci left: 8.907660e-01	ci right 8.977575e-01	k: 26829	n:30000
KS ci ratio: 1.365551e-01	ci left: 2.490510e-02	ci right 2.858732e-02	k: 801	n:30000
HSD17B4   30000 perm   6 sec   (4832 perm/sec)   p_kst 2.670000e-02   p_cons 8.943000e-01   p_joint 5.696667e-02

Joint ci ratio: 7.290699e-02	ci left: 6.493745e-02	ci right 6.987558e-02	k: 2695	n:40000
Cons ci ratio: 6.720943e-03	ci left: 8.917521e-01	ci right 8.977905e-01	k: 35792	n:40000
KS ci ratio: 1.162291e-01	ci left: 2.604071e-02	ci right 2.927835e-02	k: 1105	n:40000
HSD17B4   40000 perm   9 sec   (4670 perm/sec)   p_kst 2.762500e-02   p_cons 8.948000e-01   p_joint 6.737500e-02

Joint ci ratio: 5.494911e-02	ci left: 8.983589e-02	ci right 9.493155e-02	k: 4618	n:50000
Cons ci ratio: 6.021524e-03	ci left: 8.917542e-01	ci right 8.971599e-01	k: 44724	n:50000
KS ci ratio: 1.005153e-01	ci left: 2.803426e-02	ci right 3.102069e-02	k: 1475	n:50000
HSD17B4   50000 perm   11 sec   (4535 perm/sec)   p_kst 2.950000e-02   p_cons 8.944800e-01   p_joint 9.236000e-02

Joint ci ratio: 6.390148e-02	ci left: 5.712768e-02	ci right 6.091512e-02	k: 3540	n:60000
Cons ci ratio: 5.499154e-03	ci left: 8.919135e-01	ci right 8.968483e-01	k: 53664	n:60000
KS ci ratio: 9.315423e-02	ci left: 2.732968e-02	ci right 3.001617e-02	k: 1719	n:60000
HSD17B4   60000 perm   14 sec   (4423 perm/sec)   p_kst 2.865000e-02   p_cons 8.944000e-01   p_joint 5.900000e-02

Outputting figure to mutsig2_images.part000000000081/HSD17B4.3_2307_60000_0.02865_0.8944_0.059.png
                gene_name: HSD17B4
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.061 

Current progress: 43 percent done.
HSD3B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.602805e-02	ci left: 6.848624e-01	ci right 7.030245e-01	k: 6940	n:10000
Cons ci ratio: 4.633221e-02	ci left: 4.074111e-01	ci right 4.268372e-01	k: 4171	n:10000
KS ci ratio: 2.701279e-02	ci left: 6.687414e-01	ci right 6.871549e-01	k: 6780	n:10000
HSD3B1   10000 perm   2 sec   (6475 perm/sec)   p_kst 6.780000e-01   p_cons 4.171000e-01   p_joint 6.940000e-01

Outputting figure to mutsig2_images.part000000000081/HSD3B1.3_1134_10000_0.678_0.4171_0.694.png
                gene_name: HSD3B1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 45 percent done.
HSF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.038522e-01	ci left: 1.181869e-01	ci right 1.312326e-01	k: 1246	n:10000
Cons ci ratio: 1.165041e-02	ci left: 9.133766e-01	ci right 9.241779e-01	k: 9189	n:10000
KS ci ratio: 1.239631e-01	ci left: 8.523830e-02	ci right 9.660131e-02	k: 908	n:10000
HSF2   10000 perm   2 sec   (6010 perm/sec)   p_kst 9.080000e-02   p_cons 9.189000e-01   p_joint 1.246000e-01

Joint ci ratio: 5.822618e-02	ci left: 1.793431e-01	ci right 1.901487e-01	k: 3694	n:20000
Cons ci ratio: 8.269481e-03	ci left: 9.144178e-01	ci right 9.220601e-01	k: 18366	n:20000
KS ci ratio: 8.575060e-02	ci left: 9.052910e-02	ci right 9.868920e-02	k: 1891	n:20000
HSF2   20000 perm   4 sec   (5348 perm/sec)   p_kst 9.455000e-02   p_cons 9.183000e-01   p_joint 1.847000e-01

Outputting figure to mutsig2_images.part000000000081/HSF2.3_1663_20000_0.09455_0.9183_0.1847.png
                gene_name: HSF2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 47 percent done.
HSF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.309272e-02	ci left: 1.435445e-01	ci right 1.576597e-01	k: 1505	n:10000
Cons ci ratio: 8.606556e-02	ci left: 1.643550e-01	ci right 1.792367e-01	k: 1717	n:10000
KS ci ratio: 8.112025e-02	ci left: 1.815648e-01	ci right 1.970166e-01	k: 1892	n:10000
HSF5   10000 perm   2 sec   (6054 perm/sec)   p_kst 1.892000e-01   p_cons 1.717000e-01   p_joint 1.505000e-01

Outputting figure to mutsig2_images.part000000000081/HSF5.3_1815_10000_0.1892_0.1717_0.1505.png
                gene_name: HSF5
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 49 percent done.
HSP90AA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.897850e-02	ci left: 2.972729e-01	ci right 3.154400e-01	k: 3063	n:10000
Cons ci ratio: 2.549010e-02	ci left: 6.937343e-01	ci right 7.117474e-01	k: 7028	n:10000
KS ci ratio: 7.637447e-02	ci left: 2.004751e-01	ci right 2.164950e-01	k: 2084	n:10000
HSP90AA1   10000 perm   2 sec   (5408 perm/sec)   p_kst 2.084000e-01   p_cons 7.028000e-01   p_joint 3.063000e-01

Outputting figure to mutsig2_images.part000000000081/HSP90AA1.3_2613_10000_0.2084_0.7028_0.3063.png
                gene_name: HSP90AA1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 51 percent done.
HSP90AB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.525240e-02	ci left: 6.976675e-01	ci right 7.156120e-01	k: 7067	n:10000
Cons ci ratio: 2.878780e-02	ci left: 6.401566e-01	ci right 6.589562e-01	k: 6496	n:10000
KS ci ratio: 3.422405e-02	ci left: 5.576212e-01	ci right 5.771396e-01	k: 5674	n:10000
HSP90AB1   10000 perm   2 sec   (5723 perm/sec)   p_kst 5.674000e-01   p_cons 6.496000e-01   p_joint 7.067000e-01

Outputting figure to mutsig2_images.part000000000081/HSP90AB1.3_2219_10000_0.5674_0.6496_0.7067.png
                gene_name: HSP90AB1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 53 percent done.
HSPA12A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.087337e-02	ci left: 7.708384e-01	ci right 7.871988e-01	k: 7791	n:10000
KS ci ratio: 2.886371e-02	ci left: 6.389496e-01	ci right 6.577639e-01	k: 6484	n:10000
HSPA12A   10000 perm   2 sec   (5954 perm/sec)   p_kst 6.484000e-01   p_cons 7.791000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HSPA12A.3_2076_10000_0.6484_0.7791_1.png
                gene_name: HSPA12A
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
HOXD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.391144e-02	ci left: 5.621323e-01	ci right 5.816258e-01	k: 5719	n:10000
KS ci ratio: 5.660918e-02	ci left: 3.148297e-01	ci right 3.332729e-01	k: 3240	n:10000
HOXD10   10000 perm   2 sec   (6636 perm/sec)   p_kst 3.240000e-01   p_cons 5.719000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HOXD10.2_1031_10000_0.324_0.5719_1.png
                gene_name: HOXD10
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
HOXD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.440813e-02	ci left: 7.116922e-01	ci right 7.293792e-01	k: 7206	n:10000
Cons ci ratio: 2.262572e-02	ci left: 7.414922e-01	ci right 7.585620e-01	k: 7501	n:10000
KS ci ratio: 5.676458e-02	ci left: 3.136389e-01	ci right 3.320644e-01	k: 3228	n:10000
HOXD3   10000 perm   2 sec   (6456 perm/sec)   p_kst 3.228000e-01   p_cons 7.501000e-01   p_joint 7.206000e-01

Outputting figure to mutsig2_images.part000000000081/HOXD3.2_1307_10000_0.3228_0.7501_0.7206.png
                gene_name: HOXD3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 59 percent done.
HOXD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.281508e-02	ci left: 8.975446e-01	ci right 9.092192e-01	k: 9035	n:10000
Cons ci ratio: 8.143879e-02	ci left: 1.803839e-01	ci right 1.957983e-01	k: 1880	n:10000
KS ci ratio: 2.726052e-02	ci left: 6.647131e-01	ci right 6.831855e-01	k: 6740	n:10000
HOXD8   10000 perm   1 sec   (6809 perm/sec)   p_kst 6.740000e-01   p_cons 1.880000e-01   p_joint 9.035000e-01

Outputting figure to mutsig2_images.part000000000081/HOXD8.2_881_10000_0.674_0.188_0.9035.png
                gene_name: HOXD8
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 61 percent done.
HPRT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.059670e-02	ci left: 3.654989e-01	ci right 3.845739e-01	k: 3750	n:10000
Cons ci ratio: 1.656929e-01	ci left: 4.859368e-02	ci right 5.746898e-02	k: 529	n:10000
KS ci ratio: 1.963746e-02	ci left: 7.914146e-01	ci right 8.072106e-01	k: 7994	n:10000
HPRT1   10000 perm   1 sec   (6704 perm/sec)   p_kst 7.994000e-01   p_cons 5.290000e-02   p_joint 3.750000e-01

Joint ci ratio: 2.297426e-02	ci left: 5.859027e-01	ci right 5.995704e-01	k: 11855	n:20000
Cons ci ratio: 1.164133e-01	ci left: 5.051865e-02	ci right 5.681191e-02	k: 1072	n:20000
KS ci ratio: 1.385089e-02	ci left: 7.945900e-01	ci right 8.057226e-01	k: 16004	n:20000
HPRT1   20000 perm   3 sec   (5928 perm/sec)   p_kst 8.002000e-01   p_cons 5.360000e-02   p_joint 5.927500e-01

Joint ci ratio: 5.298416e-02	ci left: 1.501963e-01	ci right 1.584041e-01	k: 4628	n:30000
Cons ci ratio: 9.650168e-02	ci left: 4.961210e-02	ci right 5.467508e-02	k: 1563	n:30000
KS ci ratio: 1.130088e-02	ci left: 7.958650e-01	ci right 8.049434e-01	k: 24013	n:30000
HPRT1   30000 perm   5 sec   (5632 perm/sec)   p_kst 8.004333e-01   p_cons 5.210000e-02   p_joint 1.542667e-01

Outputting figure to mutsig2_images.part000000000081/HPRT1.2_693_30000_0.80043_0.0521_0.15427.png
                gene_name: HPRT1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 63 percent done.
HPSE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.045107e-01	ci left: 1.381734e-02	ci right 1.887010e-02	k: 162	n:10000
Cons ci ratio: 3.301551e-01	ci left: 1.160595e-02	ci right 1.628351e-02	k: 138	n:10000
KS ci ratio: 5.826473e-02	ci left: 3.024292e-01	ci right 3.206807e-01	k: 3115	n:10000
HPSE   10000 perm   2 sec   (6208 perm/sec)   p_kst 3.115000e-01   p_cons 1.380000e-02   p_joint 1.620000e-02

Joint ci ratio: 1.291237e-01	ci left: 4.119905e-02	ci right 4.693445e-02	k: 880	n:20000
Cons ci ratio: 2.439040e-01	ci left: 1.119427e-02	ci right 1.434975e-02	k: 254	n:20000
KS ci ratio: 4.098440e-02	ci left: 3.073713e-01	ci right 3.202828e-01	k: 6276	n:20000
HPSE   20000 perm   4 sec   (5513 perm/sec)   p_kst 3.138000e-01   p_cons 1.270000e-02   p_joint 4.400000e-02

Joint ci ratio: 1.588280e-01	ci left: 1.831759e-02	ci right 2.150967e-02	k: 596	n:30000
Cons ci ratio: 1.966889e-01	ci left: 1.178058e-02	ci right 1.438165e-02	k: 391	n:30000
KS ci ratio: 3.338482e-02	ci left: 3.095792e-01	ci right 3.201234e-01	k: 9445	n:30000
HPSE   30000 perm   6 sec   (5243 perm/sec)   p_kst 3.148333e-01   p_cons 1.303333e-02   p_joint 1.986667e-02

Joint ci ratio: 9.700195e-02	ci left: 3.731916e-02	ci right 4.114810e-02	k: 1568	n:40000
Cons ci ratio: 1.688175e-01	ci left: 1.217635e-02	ci right 1.444512e-02	k: 531	n:40000
KS ci ratio: 2.902755e-02	ci left: 3.085814e-01	ci right 3.176958e-01	k: 12525	n:40000
HPSE   40000 perm   8 sec   (5065 perm/sec)   p_kst 3.131250e-01   p_cons 1.327500e-02   p_joint 3.920000e-02

Joint ci ratio: 8.016419e-02	ci left: 4.380748e-02	ci right 4.748551e-02	k: 2281	n:50000
Cons ci ratio: 1.507657e-01	ci left: 1.233348e-02	ci right 1.436361e-02	k: 666	n:50000
KS ci ratio: 2.600110e-02	ci left: 3.084382e-01	ci right 3.165836e-01	k: 15625	n:50000
HPSE   50000 perm   10 sec   (4928 perm/sec)   p_kst 3.125000e-01   p_cons 1.332000e-02   p_joint 4.562000e-02

Joint ci ratio: 7.275475e-02	ci left: 4.446848e-02	ci right 4.784226e-02	k: 2768	n:60000
Cons ci ratio: 1.381028e-01	ci left: 1.233425e-02	ci right 1.417994e-02	k: 794	n:60000
KS ci ratio: 2.368897e-02	ci left: 3.096392e-01	ci right 3.170788e-01	k: 18801	n:60000
HPSE   60000 perm   12 sec   (4808 perm/sec)   p_kst 3.133500e-01   p_cons 1.323333e-02   p_joint 4.613333e-02

Joint ci ratio: 7.371552e-02	ci left: 3.739542e-02	ci right 4.027154e-02	k: 2717	n:70000
Cons ci ratio: 1.262474e-01	ci left: 1.272737e-02	ci right 1.445616e-02	k: 950	n:70000
KS ci ratio: 2.196356e-02	ci left: 3.092949e-01	ci right 3.161778e-01	k: 21891	n:70000
HPSE   70000 perm   15 sec   (4703 perm/sec)   p_kst 3.127286e-01   p_cons 1.357143e-02   p_joint 3.881429e-02

Joint ci ratio: 6.890023e-02	ci left: 3.754604e-02	ci right 4.023753e-02	k: 3110	n:80000
Cons ci ratio: 1.175390e-01	ci left: 1.290592e-02	ci right 1.452963e-02	k: 1096	n:80000
KS ci ratio: 2.052022e-02	ci left: 3.100366e-01	ci right 3.164770e-01	k: 25060	n:80000
HPSE   80000 perm   18 sec   (4541 perm/sec)   p_kst 3.132500e-01   p_cons 1.370000e-02   p_joint 3.887500e-02

Joint ci ratio: 6.675520e-02	ci left: 3.566684e-02	ci right 3.814090e-02	k: 3320	n:90000
Cons ci ratio: 1.113729e-01	ci left: 1.282104e-02	ci right 1.434389e-02	k: 1221	n:90000
KS ci ratio: 1.933897e-02	ci left: 3.103921e-01	ci right 3.164644e-01	k: 28208	n:90000
HPSE   90000 perm   20 sec   (4462 perm/sec)   p_kst 3.134222e-01   p_cons 1.356667e-02   p_joint 3.688889e-02

Joint ci ratio: 5.778122e-02	ci left: 4.272721e-02	ci right 4.527932e-02	k: 4399	n:100000
Cons ci ratio: 1.056489e-01	ci left: 1.286205e-02	ci right 1.430637e-02	k: 1357	n:100000
KS ci ratio: 1.832711e-02	ci left: 3.110042e-01	ci right 3.167666e-01	k: 31388	n:100000
HPSE   100000 perm   23 sec   (4377 perm/sec)   p_kst 3.138800e-01   p_cons 1.357000e-02   p_joint 4.399000e-02

Joint ci ratio: 6.128964e-02	ci left: 3.475455e-02	ci right 3.696091e-02	k: 3943	n:110000
Cons ci ratio: 1.020848e-01	ci left: 1.255158e-02	ci right 1.391063e-02	k: 1454	n:110000
KS ci ratio: 1.745281e-02	ci left: 3.116658e-01	ci right 3.171622e-01	k: 34585	n:110000
HPSE   110000 perm   26 sec   (4306 perm/sec)   p_kst 3.144091e-01   p_cons 1.321818e-02   p_joint 3.584545e-02

Joint ci ratio: 5.894050e-02	ci left: 3.450120e-02	ci right 3.660465e-02	k: 4265	n:120000
Cons ci ratio: 9.771614e-02	ci left: 1.258627e-02	ci right 1.388741e-02	k: 1587	n:120000
KS ci ratio: 1.672311e-02	ci left: 3.114409e-01	ci right 3.167014e-01	k: 37688	n:120000
HPSE   120000 perm   28 sec   (4237 perm/sec)   p_kst 3.140667e-01   p_cons 1.322500e-02   p_joint 3.554167e-02

Outputting figure to mutsig2_images.part000000000081/HPSE.2_1680_120000_0.31407_0.013225_0.035542.png
                gene_name: HPSE
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.037 

Current progress: 65 percent done.
HR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.831423e-02	ci left: 2.391649e-01	ci right 2.561823e-01	k: 2476	n:10000
Cons ci ratio: 1.340238e-01	ci left: 7.349567e-02	ci right 8.415122e-02	k: 787	n:10000
KS ci ratio: 2.053356e-02	ci left: 7.765116e-01	ci right 7.927222e-01	k: 7847	n:10000
HR   10000 perm   2 sec   (5483 perm/sec)   p_kst 7.847000e-01   p_cons 7.870000e-02   p_joint 2.476000e-01

Joint ci ratio: 7.914620e-02	ci left: 1.049095e-01	ci right 1.136044e-01	k: 2184	n:20000
Cons ci ratio: 9.447857e-02	ci left: 7.549372e-02	ci right 8.302914e-02	k: 1584	n:20000
KS ci ratio: 1.441183e-02	ci left: 7.814611e-01	ci right 7.928553e-01	k: 15744	n:20000
HR   20000 perm   4 sec   (4896 perm/sec)   p_kst 7.872000e-01   p_cons 7.920000e-02   p_joint 1.092000e-01

Outputting figure to mutsig2_images.part000000000081/HR.2_3642_20000_0.7872_0.0792_0.1092.png
                gene_name: HR
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 67 percent done.
HRASLS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.042832e-02	ci left: 4.746606e-01	ci right 4.943484e-01	k: 4845	n:10000
Cons ci ratio: 4.827181e-02	ci left: 3.876902e-01	ci right 4.069696e-01	k: 3973	n:10000
KS ci ratio: 4.301616e-02	ci left: 4.438072e-01	ci right 4.634199e-01	k: 4536	n:10000
HRASLS   10000 perm   1 sec   (6944 perm/sec)   p_kst 4.536000e-01   p_cons 3.973000e-01   p_joint 4.845000e-01

Outputting figure to mutsig2_images.part000000000081/HRASLS.2_519_10000_0.4536_0.3973_0.4845.png
                gene_name: HRASLS
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 69 percent done.
HRASLS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.600800e-02	ci left: 5.324742e-01	ci right 5.521012e-01	k: 5423	n:10000
Cons ci ratio: 7.424233e-02	ci left: 2.098419e-01	ci right 2.261227e-01	k: 2179	n:10000
KS ci ratio: 2.195589e-02	ci left: 7.527183e-01	ci right 7.695293e-01	k: 7612	n:10000
HRASLS5   10000 perm   1 sec   (6912 perm/sec)   p_kst 7.612000e-01   p_cons 2.179000e-01   p_joint 5.423000e-01

Outputting figure to mutsig2_images.part000000000081/HRASLS5.2_864_10000_0.7612_0.2179_0.5423.png
                gene_name: HRASLS5
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 71 percent done.
HRH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.293134e-02	ci left: 3.447203e-01	ci right 3.635648e-01	k: 3541	n:10000
Cons ci ratio: 9.639384e-02	ci left: 1.350178e-01	ci right 1.487915e-01	k: 1418	n:10000
KS ci ratio: 2.013815e-02	ci left: 7.830994e-01	ci right 7.991306e-01	k: 7912	n:10000
HRH4   10000 perm   2 sec   (6610 perm/sec)   p_kst 7.912000e-01   p_cons 1.418000e-01   p_joint 3.541000e-01

Outputting figure to mutsig2_images.part000000000081/HRH4.2_1185_10000_0.7912_0.1418_0.3541.png
                gene_name: HRH4
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 73 percent done.
HS3ST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.818335e-02	ci left: 3.030243e-01	ci right 3.212853e-01	k: 3121	n:10000
Cons ci ratio: 2.233008e-02	ci left: 7.464469e-01	ci right 7.634043e-01	k: 7550	n:10000
KS ci ratio: 3.389164e-01	ci left: 1.096414e-02	ci right 1.552595e-02	k: 131	n:10000
HS3ST1   10000 perm   1 sec   (6816 perm/sec)   p_kst 1.310000e-02   p_cons 7.550000e-01   p_joint 3.121000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.589439e-02	ci left: 7.465080e-01	ci right 7.585185e-01	k: 15051	n:20000
KS ci ratio: 2.401172e-01	ci left: 1.157027e-02	ci right 1.477358e-02	k: 262	n:20000
HS3ST1   20000 perm   3 sec   (6034 perm/sec)   p_kst 1.310000e-02   p_cons 7.525500e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.306195e-02	ci left: 7.451936e-01	ci right 7.550246e-01	k: 22504	n:30000
KS ci ratio: 1.995451e-01	ci left: 1.143190e-02	ci right 1.399710e-02	k: 380	n:30000
HS3ST1   30000 perm   5 sec   (5727 perm/sec)   p_kst 1.266667e-02   p_cons 7.501333e-01   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 1.126925e-02	ci left: 7.472847e-01	ci right 7.557788e-01	k: 30062	n:40000
KS ci ratio: 1.742065e-01	ci left: 1.141029e-02	ci right 1.361132e-02	k: 499	n:40000
HS3ST1   40000 perm   7 sec   (5530 perm/sec)   p_kst 1.247500e-02   p_cons 7.515500e-01   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 1.008736e-02	ci left: 7.474464e-01	ci right 7.550444e-01	k: 37563	n:50000
KS ci ratio: 1.550634e-01	ci left: 1.164070e-02	ci right 1.361649e-02	k: 630	n:50000
HS3ST1   50000 perm   9 sec   (5370 perm/sec)   p_kst 1.260000e-02   p_cons 7.512600e-01   p_joint 1

Joint ci ratio: 6.533116e-05	ci left: 9.999385e-01	ci right 1	k: 60000	n:60000
Cons ci ratio: 9.209117e-03	ci left: 7.477539e-01	ci right 7.546885e-01	k: 45074	n:60000
KS ci ratio: 1.426252e-01	ci left: 1.154592e-02	ci right 1.333504e-02	k: 745	n:60000
HS3ST1   60000 perm   11 sec   (5235 perm/sec)   p_kst 1.241667e-02   p_cons 7.512333e-01   p_joint 1

Joint ci ratio: 5.599840e-05	ci left: 9.999473e-01	ci right 1	k: 70000	n:70000
Cons ci ratio: 8.532614e-03	ci left: 7.477217e-01	ci right 7.541432e-01	k: 52566	n:70000
KS ci ratio: 1.336351e-01	ci left: 1.133082e-02	ci right 1.296713e-02	k: 849	n:70000
HS3ST1   70000 perm   14 sec   (5115 perm/sec)   p_kst 1.212857e-02   p_cons 7.509429e-01   p_joint 1

Joint ci ratio: 4.899878e-05	ci left: 9.999539e-01	ci right 1	k: 80000	n:80000
Cons ci ratio: 7.981913e-03	ci left: 7.479128e-01	ci right 7.539190e-01	k: 60074	n:80000
KS ci ratio: 1.260881e-01	ci left: 1.118430e-02	ci right 1.270140e-02	k: 954	n:80000
HS3ST1   80000 perm   16 sec   (5000 perm/sec)   p_kst 1.192500e-02   p_cons 7.509250e-01   p_joint 1

Joint ci ratio: 4.355459e-05	ci left: 9.999590e-01	ci right 1	k: 90000	n:90000
Cons ci ratio: 7.537771e-03	ci left: 7.474697e-01	ci right 7.531364e-01	k: 67528	n:90000
KS ci ratio: 1.183970e-01	ci left: 1.132041e-02	ci right 1.275575e-02	k: 1082	n:90000
HS3ST1   90000 perm   18 sec   (4898 perm/sec)   p_kst 1.202222e-02   p_cons 7.503111e-01   p_joint 1

Joint ci ratio: 3.919922e-05	ci left: 9.999631e-01	ci right 1	k: 100000	n:100000
Cons ci ratio: 7.141819e-03	ci left: 7.480968e-01	ci right 7.534687e-01	k: 75079	n:100000
KS ci ratio: 1.125741e-01	ci left: 1.130515e-02	ci right 1.266337e-02	k: 1197	n:100000
HS3ST1   100000 perm   21 sec   (4798 perm/sec)   p_kst 1.197000e-02   p_cons 7.507900e-01   p_joint 1

Joint ci ratio: 3.563572e-05	ci left: 9.999665e-01	ci right 1	k: 110000	n:110000
Cons ci ratio: 6.807457e-03	ci left: 7.483330e-01	ci right 7.534537e-01	k: 82599	n:110000
KS ci ratio: 1.068358e-01	ci left: 1.144454e-02	ci right 1.274501e-02	k: 1329	n:110000
HS3ST1   110000 perm   23 sec   (4705 perm/sec)   p_kst 1.208182e-02   p_cons 7.509000e-01   p_joint 1

Joint ci ratio: 3.266612e-05	ci left: 9.999693e-01	ci right 1	k: 120000	n:120000
Cons ci ratio: 6.510531e-03	ci left: 7.488524e-01	ci right 7.537521e-01	k: 90157	n:120000
KS ci ratio: 1.021419e-01	ci left: 1.150530e-02	ci right 1.275178e-02	k: 1454	n:120000
HS3ST1   120000 perm   26 sec   (4616 perm/sec)   p_kst 1.211667e-02   p_cons 7.513083e-01   p_joint 1

Joint ci ratio: 3.015338e-05	ci left: 9.999716e-01	ci right 1	k: 130000	n:130000
Cons ci ratio: 6.265041e-03	ci left: 7.483544e-01	ci right 7.530652e-01	k: 97593	n:130000
KS ci ratio: 9.754913e-02	ci left: 1.167036e-02	ci right 1.287462e-02	k: 1594	n:130000
HS3ST1   130000 perm   29 sec   (4532 perm/sec)   p_kst 1.226154e-02   p_cons 7.507154e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HS3ST1.2_928_130000_0.012262_0.75072_1.png
                gene_name: HS3ST1
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
HS3ST3B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.519152e-02	ci left: 6.986761e-01	ci right 7.166028e-01	k: 7077	n:10000
KS ci ratio: 2.517934e-02	ci left: 6.988779e-01	ci right 7.168009e-01	k: 7079	n:10000
HS3ST3B1   10000 perm   1 sec   (6753 perm/sec)   p_kst 7.079000e-01   p_cons 7.077000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HS3ST3B1.2_1181_10000_0.7079_0.7077_1.png
                gene_name: HS3ST3B1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
HS6ST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.146986e-02	ci left: 2.801280e-01	ci right 2.979950e-01	k: 2890	n:10000
Cons ci ratio: 1.308937e-01	ci left: 7.688883e-02	ci right 8.775595e-02	k: 822	n:10000
KS ci ratio: 5.310533e-02	ci left: 3.432297e-01	ci right 3.620562e-01	k: 3526	n:10000
HS6ST2   10000 perm   2 sec   (6186 perm/sec)   p_kst 3.526000e-01   p_cons 8.220000e-02   p_joint 2.890000e-01

Joint ci ratio: 4.725352e-02	ci left: 2.499128e-01	ci right 2.620582e-01	k: 5119	n:20000
Cons ci ratio: 9.024730e-02	ci left: 8.229672e-02	ci right 9.012407e-02	k: 1723	n:20000
KS ci ratio: 3.791569e-02	ci left: 3.416448e-01	ci right 3.548994e-01	k: 6965	n:20000
HS6ST2   20000 perm   4 sec   (5437 perm/sec)   p_kst 3.482500e-01   p_cons 8.615000e-02   p_joint 2.559500e-01

Outputting figure to mutsig2_images.part000000000081/HS6ST2.2_1958_20000_0.34825_0.08615_0.25595.png
                gene_name: HS6ST2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 80 percent done.
HS6ST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.655262e-02	ci left: 1.627829e-01	ci right 1.776098e-01	k: 1701	n:10000
KS ci ratio: 3.784578e-02	ci left: 5.076523e-01	ci right 5.273375e-01	k: 5175	n:10000
HS6ST3   10000 perm   2 sec   (6467 perm/sec)   p_kst 5.175000e-01   p_cons 1.701000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HS6ST3.2_1424_10000_0.5175_0.1701_1.png
                gene_name: HS6ST3
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
HSD17B10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.976835e-02	ci left: 6.246718e-01	ci right 6.436500e-01	k: 6342	n:10000
Cons ci ratio: 1.377760e-02	ci left: 8.838059e-01	ci right 8.961658e-01	k: 8901	n:10000
KS ci ratio: 6.486675e-02	ci left: 2.587439e-01	ci right 2.761918e-01	k: 2674	n:10000
HSD17B10   10000 perm   1 sec   (6782 perm/sec)   p_kst 2.674000e-01   p_cons 8.901000e-01   p_joint 6.342000e-01

Outputting figure to mutsig2_images.part000000000081/HSD17B10.2_810_10000_0.2674_0.8901_0.6342.png
                gene_name: HSD17B10
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 84 percent done.
HSD17B12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.808495e-02	ci left: 1.579697e-01	ci right 1.726258e-01	k: 1652	n:10000
KS ci ratio: 1.734323e-01	ci left: 4.437162e-02	ci right 5.289379e-02	k: 485	n:10000
HSD17B12   10000 perm   1 sec   (6743 perm/sec)   p_kst 4.850000e-02   p_cons 1.652000e-01   p_joint 1

Joint ci ratio: 5.367236e-02	ci left: 2.048676e-01	ci right 2.162167e-01	k: 4210	n:20000
Cons ci ratio: 6.192770e-02	ci left: 1.617065e-01	ci right 1.720906e-01	k: 3337	n:20000
KS ci ratio: 1.242589e-01	ci left: 4.444751e-02	ci right 5.038496e-02	k: 947	n:20000
HSD17B12   20000 perm   3 sec   (5941 perm/sec)   p_kst 4.735000e-02   p_cons 1.668500e-01   p_joint 2.105000e-01

Joint ci ratio: 4.380810e-02	ci left: 2.060307e-01	ci right 2.152920e-01	k: 6319	n:30000
Cons ci ratio: 5.060040e-02	ci left: 1.624653e-01	ci right 1.709327e-01	k: 5000	n:30000
KS ci ratio: 1.007898e-01	ci left: 4.557572e-02	ci right 5.044562e-02	k: 1439	n:30000
HSD17B12   30000 perm   5 sec   (5621 perm/sec)   p_kst 4.796667e-02   p_cons 1.666667e-01   p_joint 2.106333e-01

Joint ci ratio: 4.149994e-02	ci left: 1.785766e-01	ci right 1.861695e-01	k: 7294	n:40000
Cons ci ratio: 4.389246e-02	ci left: 1.625885e-01	ci right 1.699100e-01	k: 6649	n:40000
KS ci ratio: 8.655540e-02	ci left: 4.665998e-02	ci right 5.090583e-02	k: 1950	n:40000
HSD17B12   40000 perm   7 sec   (5408 perm/sec)   p_kst 4.875000e-02   p_cons 1.662250e-01   p_joint 1.823500e-01

Outputting figure to mutsig2_images.part000000000081/HSD17B12.2_983_40000_0.04875_0.16623_0.18235.png
                gene_name: HSD17B12
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 86 percent done.
HSD17B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.525351e-02	ci left: 4.188726e-01	ci right 4.383690e-01	k: 4286	n:10000
Cons ci ratio: 7.911566e-02	ci left: 1.892437e-01	ci right 2.049332e-01	k: 1970	n:10000
KS ci ratio: 6.561992e-02	ci left: 2.542921e-01	ci right 2.716462e-01	k: 2629	n:10000
HSD17B2   10000 perm   2 sec   (6595 perm/sec)   p_kst 2.629000e-01   p_cons 1.970000e-01   p_joint 4.286000e-01

Outputting figure to mutsig2_images.part000000000081/HSD17B2.2_1184_10000_0.2629_0.197_0.4286.png
                gene_name: HSD17B2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 88 percent done.
HSD17B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.069142e-02	ci left: 7.738773e-01	ci right 7.901581e-01	k: 7821	n:10000
KS ci ratio: 3.316256e-02	ci left: 5.730625e-01	ci right 5.924892e-01	k: 5828	n:10000
HSD17B3   10000 perm   1 sec   (6683 perm/sec)   p_kst 5.828000e-01   p_cons 7.821000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000081/HSD17B3.2_977_10000_0.5828_0.7821_1.png
                gene_name: HSD17B3
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
HSD17B6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.469696e-02	ci left: 8.701983e-01	ci right 8.831813e-01	k: 8768	n:10000
Cons ci ratio: 1.135979e-01	ci left: 1.003243e-01	ci right 1.125061e-01	k: 1063	n:10000
KS ci ratio: 1.037572e-01	ci left: 1.183824e-01	ci right 1.314370e-01	k: 1248	n:10000
HSD17B6   10000 perm   1 sec   (6685 perm/sec)   p_kst 1.248000e-01   p_cons 1.063000e-01   p_joint 8.768000e-01

Joint ci ratio: 6.270728e-02	ci left: 1.583001e-01	ci right 1.685980e-01	k: 3268	n:20000
Cons ci ratio: 8.208660e-02	ci left: 9.813315e-02	ci right 1.065829e-01	k: 2046	n:20000
KS ci ratio: 7.353701e-02	ci left: 1.198066e-01	ci right 1.290029e-01	k: 2487	n:20000
HSD17B6   20000 perm   3 sec   (5878 perm/sec)   p_kst 1.243500e-01   p_cons 1.023000e-01   p_joint 1.634000e-01

Outputting figure to mutsig2_images.part000000000081/HSD17B6.2_970_20000_0.12435_0.1023_0.1634.png
                gene_name: HSD17B6
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 92 percent done.
HSD3B7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.603921e-02	ci left: 1.358995e-01	ci right 1.497093e-01	k: 1427	n:10000
Cons ci ratio: 4.922911e-01	ci left: 4.756711e-03	ci right 7.941167e-03	k: 62	n:10000
KS ci ratio: 1.175301e-01	ci left: 9.418721e-02	ci right 1.060469e-01	k: 1000	n:10000
HSD3B7   10000 perm   2 sec   (6594 perm/sec)   p_kst 1.000000e-01   p_cons 6.200000e-03   p_joint 1.427000e-01

Joint ci ratio: 1.447942e-01	ci left: 3.278524e-02	ci right 3.795099e-02	k: 706	n:20000
Cons ci ratio: 3.582663e-01	ci left: 4.885950e-03	ci right 7.061454e-03	k: 118	n:20000
KS ci ratio: 8.326984e-02	ci left: 9.558124e-02	ci right 1.039355e-01	k: 1994	n:20000
HSD3B7   20000 perm   3 sec   (5834 perm/sec)   p_kst 9.970000e-02   p_cons 5.900000e-03   p_joint 3.530000e-02

Joint ci ratio: 2.259452e-01	ci left: 8.810667e-03	ci right 1.108575e-02	k: 297	n:30000
Cons ci ratio: 2.971666e-01	ci left: 4.910451e-03	ci right 6.654022e-03	k: 172	n:30000
KS ci ratio: 6.797106e-02	ci left: 9.639764e-02	ci right 1.032134e-01	k: 2993	n:30000
HSD3B7   30000 perm   5 sec   (5486 perm/sec)   p_kst 9.976667e-02   p_cons 5.733333e-03   p_joint 9.900000e-03

Joint ci ratio: 3.064081e-01	ci left: 3.451342e-03	ci right 4.722318e-03	k: 162	n:40000
Cons ci ratio: 2.507000e-01	ci left: 5.313599e-03	ci right 6.859426e-03	k: 242	n:40000
KS ci ratio: 5.886486e-02	ci left: 9.685462e-02	ci right 1.027536e-01	k: 3991	n:40000
HSD3B7   40000 perm   8 sec   (5307 perm/sec)   p_kst 9.977500e-02   p_cons 6.050000e-03   p_joint 4.050000e-03

Joint ci ratio: 3.877379e-01	ci left: 1.645615e-03	ci right 2.453950e-03	k: 101	n:50000
Cons ci ratio: 2.226715e-01	ci left: 5.474083e-03	ci right 6.864189e-03	k: 307	n:50000
KS ci ratio: 5.288621e-02	ci left: 9.637573e-02	ci right 1.016309e-01	k: 4949	n:50000
HSD3B7   50000 perm   10 sec   (5009 perm/sec)   p_kst 9.898000e-02   p_cons 6.140000e-03   p_joint 2.020000e-03

Joint ci ratio: 2.020640e-01	ci left: 5.603390e-03	ci right 6.878412e-03	k: 373	n:60000
Cons ci ratio: 2.004523e-01	ci left: 5.698378e-03	ci right 6.983408e-03	k: 379	n:60000
KS ci ratio: 4.776680e-02	ci left: 9.850098e-02	ci right 1.033377e-01	k: 6054	n:60000
HSD3B7   60000 perm   12 sec   (4906 perm/sec)   p_kst 1.009000e-01   p_cons 6.316667e-03   p_joint 6.216667e-03

Joint ci ratio: 1.877983e-01	ci left: 5.604672e-03	ci right 6.779684e-03	k: 432	n:70000
Cons ci ratio: 1.875805e-01	ci left: 5.618290e-03	ci right 6.794635e-03	k: 433	n:70000
KS ci ratio: 4.418931e-02	ci left: 9.881963e-02	ci right 1.032992e-01	k: 7073	n:70000
HSD3B7   70000 perm   15 sec   (4822 perm/sec)   p_kst 1.010429e-01   p_cons 6.185714e-03   p_joint 6.171429e-03

Joint ci ratio: 2.156704e-01	ci left: 3.669020e-03	ci right 4.567529e-03	k: 328	n:80000
Cons ci ratio: 1.744073e-01	ci left: 5.727562e-03	ci right 6.833701e-03	k: 501	n:80000
KS ci ratio: 4.129436e-02	ci left: 9.914311e-02	ci right 1.033359e-01	k: 8098	n:80000
HSD3B7   80000 perm   17 sec   (4758 perm/sec)   p_kst 1.012250e-01   p_cons 6.262500e-03   p_joint 4.100000e-03

Joint ci ratio: 1.945880e-01	ci left: 4.052060e-03	ci right 4.935901e-03	k: 403	n:90000
Cons ci ratio: 1.625252e-01	ci left: 5.900084e-03	ci right 6.954330e-03	k: 577	n:90000
KS ci ratio: 3.905295e-02	ci left: 9.870824e-02	ci right 1.026509e-01	k: 9060	n:90000
HSD3B7   90000 perm   19 sec   (4696 perm/sec)   p_kst 1.006667e-01   p_cons 6.411111e-03   p_joint 4.477778e-03

Joint ci ratio: 1.854110e-01	ci left: 4.037357e-03	ci right 4.871788e-03	k: 444	n:100000
Cons ci ratio: 1.553113e-01	ci left: 5.838195e-03	ci right 6.830766e-03	k: 632	n:100000
KS ci ratio: 3.703208e-02	ci left: 9.889103e-02	ci right 1.026322e-01	k: 10075	n:100000
HSD3B7   100000 perm   22 sec   (4632 perm/sec)   p_kst 1.007500e-01   p_cons 6.320000e-03   p_joint 4.440000e-03

Joint ci ratio: 1.781587e-01	ci left: 3.991377e-03	ci right 4.780560e-03	k: 481	n:110000
Cons ci ratio: 1.480088e-01	ci left: 5.867203e-03	ci right 6.813653e-03	k: 696	n:110000
KS ci ratio: 3.528677e-02	ci left: 9.908999e-02	ci right 1.026584e-01	k: 11095	n:110000
HSD3B7   110000 perm   24 sec   (4553 perm/sec)   p_kst 1.008636e-01   p_cons 6.327273e-03   p_joint 4.372727e-03

Joint ci ratio: 1.713644e-01	ci left: 3.969545e-03	ci right 4.721385e-03	k: 520	n:120000
Cons ci ratio: 1.420241e-01	ci left: 5.860130e-03	ci right 6.763977e-03	k: 756	n:120000
KS ci ratio: 3.379963e-02	ci left: 9.908556e-02	ci right 1.025004e-01	k: 12094	n:120000
HSD3B7   120000 perm   27 sec   (4473 perm/sec)   p_kst 1.007833e-01   p_cons 6.300000e-03   p_joint 4.333333e-03

Joint ci ratio: 1.366272e-01	ci left: 5.862229e-03	ci right 6.729246e-03	k: 817	n:130000
Cons ci ratio: 1.375610e-01	ci left: 5.780499e-03	ci right 6.641750e-03	k: 806	n:130000
KS ci ratio: 3.243912e-02	ci left: 9.934414e-02	ci right 1.026275e-01	k: 13127	n:130000
HSD3B7   130000 perm   30 sec   (4401 perm/sec)   p_kst 1.009769e-01   p_cons 6.200000e-03   p_joint 6.284615e-03

Joint ci ratio: 1.590254e-01	ci left: 3.977694e-03	ci right 4.671654e-03	k: 604	n:140000
Cons ci ratio: 1.315014e-01	ci left: 5.892221e-03	ci right 6.728425e-03	k: 882	n:140000
KS ci ratio: 3.128232e-02	ci left: 9.927023e-02	ci right 1.024320e-01	k: 14118	n:140000
HSD3B7   140000 perm   32 sec   (4331 perm/sec)   p_kst 1.008429e-01   p_cons 6.300000e-03   p_joint 4.314286e-03

Joint ci ratio: 1.267107e-01	ci left: 5.938109e-03	ci right 6.747817e-03	k: 950	n:150000
Cons ci ratio: 1.288412e-01	ci left: 5.738010e-03	ci right 6.534594e-03	k: 919	n:150000
KS ci ratio: 3.029348e-02	ci left: 9.889677e-02	ci right 1.019454e-01	k: 15062	n:150000
HSD3B7   150000 perm   35 sec   (4266 perm/sec)   p_kst 1.004133e-01   p_cons 6.126667e-03   p_joint 6.333333e-03

Joint ci ratio: 1.228335e-01	ci left: 5.936328e-03	ci right 6.719223e-03	k: 1011	n:160000
Cons ci ratio: 1.253512e-01	ci left: 5.694044e-03	ci right 6.461520e-03	k: 971	n:160000
KS ci ratio: 2.931450e-02	ci left: 9.904952e-02	ci right 1.020025e-01	k: 16083	n:160000
HSD3B7   160000 perm   38 sec   (4191 perm/sec)   p_kst 1.005188e-01   p_cons 6.068750e-03   p_joint 6.318750e-03

Joint ci ratio: 9.825286e-02	ci left: 8.820461e-03	ci right 9.737567e-03	k: 1576	n:170000
Cons ci ratio: 1.221902e-01	ci left: 5.649804e-03	ci right 6.390724e-03	k: 1022	n:170000
KS ci ratio: 2.847655e-02	ci left: 9.885837e-02	ci right 1.017200e-01	k: 17048	n:170000
HSD3B7   170000 perm   41 sec   (4122 perm/sec)   p_kst 1.002824e-01   p_cons 6.011765e-03   p_joint 9.270588e-03

Joint ci ratio: 8.078765e-02	ci left: 1.238922e-02	ci right 1.343766e-02	k: 2323	n:180000
Cons ci ratio: 1.181551e-01	ci left: 5.718526e-03	ci right 6.441965e-03	k: 1093	n:180000
KS ci ratio: 2.768351e-02	ci left: 9.883862e-02	ci right 1.016187e-01	k: 18040	n:180000
HSD3B7   180000 perm   44 sec   (4063 perm/sec)   p_kst 1.002222e-01   p_cons 6.072222e-03   p_joint 1.290556e-02

Joint ci ratio: 7.884667e-02	ci left: 1.233549e-02	ci right 1.335314e-02	k: 2439	n:190000
Cons ci ratio: 1.151431e-01	ci left: 5.713907e-03	ci right 6.417081e-03	k: 1151	n:190000
KS ci ratio: 2.695166e-02	ci left: 9.883241e-02	ci right 1.015377e-01	k: 19034	n:190000
HSD3B7   190000 perm   48 sec   (3995 perm/sec)   p_kst 1.001789e-01   p_cons 6.057895e-03   p_joint 1.283684e-02

Joint ci ratio: 7.119896e-02	ci left: 1.439813e-02	ci right 1.546599e-02	k: 2985	n:200000
Cons ci ratio: 1.116562e-01	ci left: 5.782871e-03	ci right 6.471562e-03	k: 1224	n:200000
KS ci ratio: 2.626111e-02	ci left: 9.892214e-02	ci right 1.015595e-01	k: 20047	n:200000
HSD3B7   200000 perm   51 sec   (3926 perm/sec)   p_kst 1.002350e-01   p_cons 6.120000e-03   p_joint 1.492500e-02

Joint ci ratio: 6.936302e-02	ci left: 1.446104e-02	ci right 1.550479e-02	k: 3145	n:210000
Cons ci ratio: 1.083839e-01	ci left: 5.854823e-03	ci right 6.530345e-03	k: 1299	n:210000
KS ci ratio: 2.562984e-02	ci left: 9.894258e-02	ci right 1.015161e-01	k: 21047	n:210000
HSD3B7   210000 perm   54 sec   (3864 perm/sec)   p_kst 1.002238e-01   p_cons 6.185714e-03   p_joint 1.497619e-02

Joint ci ratio: 6.796543e-02	ci left: 1.438893e-02	ci right 1.540573e-02	k: 3276	n:220000
Cons ci ratio: 1.063212e-01	ci left: 5.814282e-03	ci right 6.471559e-03	k: 1350	n:220000
KS ci ratio: 2.506856e-02	ci left: 9.877201e-02	ci right 1.012840e-01	k: 22005	n:220000
HSD3B7   220000 perm   58 sec   (3805 perm/sec)   p_kst 1.000227e-01   p_cons 6.136364e-03   p_joint 1.489091e-02

Joint ci ratio: 6.654010e-02	ci left: 1.437033e-02	ci right 1.536369e-02	k: 3418	n:230000
Cons ci ratio: 1.042224e-01	ci left: 5.794318e-03	ci right 6.435615e-03	k: 1405	n:230000
KS ci ratio: 2.453251e-02	ci left: 9.869035e-02	ci right 1.011458e-01	k: 22980	n:230000
HSD3B7   230000 perm   61 sec   (3753 perm/sec)   p_kst 9.991304e-02   p_cons 6.108696e-03   p_joint 1.486087e-02

Joint ci ratio: 6.529395e-02	ci left: 1.431249e-02	ci right 1.528262e-02	k: 3550	n:240000
Cons ci ratio: 1.027039e-01	ci left: 5.723349e-03	ci right 6.347004e-03	k: 1447	n:240000
KS ci ratio: 2.401052e-02	ci left: 9.875694e-02	ci right 1.011611e-01	k: 23989	n:240000
HSD3B7   240000 perm   65 sec   (3701 perm/sec)   p_kst 9.995417e-02   p_cons 6.029167e-03   p_joint 1.479167e-02

Joint ci ratio: 6.399195e-02	ci left: 1.431455e-02	ci right 1.526475e-02	k: 3696	n:250000
Cons ci ratio: 1.009435e-01	ci left: 5.693215e-03	ci right 6.302323e-03	k: 1498	n:250000
KS ci ratio: 2.351735e-02	ci left: 9.884258e-02	ci right 1.011987e-01	k: 25004	n:250000
HSD3B7   250000 perm   68 sec   (3650 perm/sec)   p_kst 1.000160e-01   p_cons 5.992000e-03   p_joint 1.478400e-02

Joint ci ratio: 6.155663e-02	ci left: 1.488471e-02	ci right 1.583383e-02	k: 3992	n:260000
Cons ci ratio: 9.901395e-02	ci left: 5.695494e-03	ci right 6.292521e-03	k: 1557	n:260000
KS ci ratio: 2.301555e-02	ci left: 9.921673e-02	ci right 1.015306e-01	k: 26096	n:260000
HSD3B7   260000 perm   72 sec   (3601 perm/sec)   p_kst 1.003692e-01   p_cons 5.988462e-03   p_joint 1.535385e-02

Outputting figure to mutsig2_images.part000000000081/HSD3B7.2_1134_260000_0.10037_0.0059885_0.015354.png
                gene_name: HSD3B7
               theta_stop: 0.099 
                    nperm: 260000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.0060 
      ci_cons_bounds_left: 0.0057 
     ci_cons_bounds_right: 0.0063 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 94 percent done.
HSDL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.159885e-03	ci left: 9.437779e-01	ci right 9.525587e-01	k: 9483	n:10000
Cons ci ratio: 4.505088e-02	ci left: 4.210658e-01	ci right 4.405745e-01	k: 4308	n:10000
KS ci ratio: 7.995015e-02	ci left: 1.859943e-01	ci right 2.015845e-01	k: 1937	n:10000
HSDL1   10000 perm   1 sec   (6701 perm/sec)   p_kst 1.937000e-01   p_cons 4.308000e-01   p_joint 9.483000e-01

Outputting figure to mutsig2_images.part000000000081/HSDL1.2_1009_10000_0.1937_0.4308_0.9483.png
                gene_name: HSDL1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 96 percent done.
HSF2BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.130334e-02	ci left: 9.179100e-01	ci right 9.284419e-01	k: 9233	n:10000
Cons ci ratio: 3.375935e-02	ci left: 5.643380e-01	ci right 5.838188e-01	k: 5741	n:10000
KS ci ratio: 2.610772e-02	ci left: 6.835521e-01	ci right 7.017356e-01	k: 6927	n:10000
HSF2BP   10000 perm   1 sec   (6875 perm/sec)   p_kst 6.927000e-01   p_cons 5.741000e-01   p_joint 9.233000e-01

Outputting figure to mutsig2_images.part000000000081/HSF2BP.2_1037_10000_0.6927_0.5741_0.9233.png
                gene_name: HSF2BP
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 98 percent done.
HSH2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.684594e-02	ci left: 6.714609e-01	ci right 6.898338e-01	k: 6807	n:10000
Cons ci ratio: 4.011404e-02	ci left: 4.785574e-01	ci right 4.982494e-01	k: 4884	n:10000
KS ci ratio: 4.108126e-02	ci left: 4.666691e-01	ci right 4.863446e-01	k: 4765	n:10000
HSH2D   10000 perm   1 sec   (6907 perm/sec)   p_kst 4.765000e-01   p_cons 4.884000e-01   p_joint 6.807000e-01

Outputting figure to mutsig2_images.part000000000081/HSH2D.2_1080_10000_0.4765_0.4884_0.6807.png
                gene_name: HSH2D
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000081
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 81 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1543>
Subject: Job 9893971: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1543>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000082> was used as the working directory.
Started at Sat Oct  6 00:13:10 2012
Results reported at Sat Oct  6 03:41:48 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000082.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000082.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 82  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000082.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  13310.11 sec.
    Max Memory :      3644 MB
    Max Swap   :      6000 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
82
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 82
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 82: processing genes 7303 - 7392
Calculating significance of each gene.
Using projection method.
7303	HSPA13	3.741634e-01
7304	HSPA14	8.455883e-01
7305	HSPA1L	1.445674e-03
7306	HSPA2	9.297985e-01
7307	HSPA4	4.760428e-01
7308	HSPA4L	5.787581e-01
7309	HSPA5	9.843453e-01
7310	HSPA6	4.913851e-01
7311	HSPA8	3.216272e-01
7312	HSPA9	2.275990e-01
7313	HSPB1	1
7314	HSPB11	3.237511e-01
7315	HSPB2	3.055666e-01
7316	HSPB3	2.488347e-01
7317	HSPB7	1
7318	HSPB8	3.836422e-01
7319	HSPB9	3.363464e-01
7320	HSPBAP1	8.708599e-01
7321	HSPBP1	5.396003e-01
7322	HSPC159	1
7323	HSPD1	6.906661e-01
7324	HSPE1	1
7325	HSPG2	9.999777e-01
7326	HSPH1	7.786562e-01
7327	HTATIP2	4.642584e-01
7328	HTATSF1	7.741255e-01
7329	HTN1	1.307958e-01
7330	HTN3	2.477710e-02
7331	HTR1A	7.049568e-02
7332	HTR1B	2.507000e-01
7333	HTR1D	4.350695e-01
7334	HTR1E	3.945358e-03
7335	HTR1F	3.619762e-01
7336	HTR2A	6.607382e-01
7337	HTR2B	6.330875e-01
7338	HTR2C	3.418152e-03
7339	HTR3A	1.199918e-01
7340	HTR3B	2.324208e-02
7341	HTR3C	2.875752e-01
7342	HTR3D	9.475939e-02
7343	HTR3E	2.385947e-01
7344	HTR4	2.406607e-01
7345	HTR5A	2.903303e-01
7346	HTR6	1
7347	HTR7	3.307191e-01
7348	HTRA1	1.191439e-02
7349	HTRA2	5.829957e-01
7350	HTRA3	8.218203e-01
7351	HTRA4	8.425255e-01
7352	HTT	9.827119e-01
7353	HUNK	6.826915e-01
7354	HUS1	7.219000e-01
7355	HUS1B	5.911416e-01
7356	HUWE1	3.422437e-01
7357	HVCN1	1.204945e-01
7358	HYAL1	1
7359	HYAL2	1
7360	HYAL3	1
7361	HYAL4	1.411015e-01
7362	HYDIN	5.565554e-02
7363	HYI	6.298483e-01
7364	HYLS1	6.030222e-01
7365	HYOU1	7.090013e-02
7366	IAH1	4.113645e-01
7367	IAPP	1
7368	IARS	2.790776e-01
7369	IARS2	3.612040e-01
7370	IBSP	1.689350e-01
7371	IBTK	4.015498e-01
7372	ICA1	1.793869e-01
7373	ICA1L	1.438160e-01
7374	ICAM1	6.910614e-01
7375	ICAM2	7.865488e-01
7376	ICAM3	1
7377	ICAM4	4.061791e-01
7378	ICAM5	8.897586e-01
7379	ICK	5.786096e-01
7380	ICMT	1
7381	ICOS	4.584550e-01
7382	ICOSLG	1
7383	ICT1	1
7384	ID1	1
7385	ID2	1
7386	ID3	1
7387	ID4	1
7388	IDE	2.541800e-01
7389	IDH1	2.477843e-01
7390	IDH2	2.186623e-03
7391	IDH3A	4.348934e-02
7392	IDH3B	1
Done

Running MutSig 2:
Scatter job 82: processing genes 7303 - 7392
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
HYDIN
Processing conservation and coverage...
63% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.723172e-01	ci left: 4.494682e-02	ci right 5.351821e-02	k: 491	n:10000
Cons ci ratio: 6.707253e-02	ci left: 2.459853e-01	ci right 2.631579e-01	k: 2545	n:10000
KS ci ratio: 2.335379e-01	ci left: 2.419439e-02	ci right 3.068483e-02	k: 273	n:10000
HYDIN   10000 perm   7 sec   (1514 perm/sec)   p_kst 2.730000e-02   p_cons 2.545000e-01   p_joint 4.910000e-02

Joint ci ratio: 1.654508e-01	ci left: 2.503753e-02	ci right 2.960129e-02	k: 545	n:20000
Cons ci ratio: 4.732184e-02	ci left: 2.493672e-01	ci right 2.615040e-01	k: 5108	n:20000
KS ci ratio: 1.585670e-01	ci left: 2.729474e-02	ci right 3.204331e-02	k: 592	n:20000
HYDIN   20000 perm   19 sec   (1080 perm/sec)   p_kst 2.960000e-02   p_cons 2.554000e-01   p_joint 2.725000e-02

Joint ci ratio: 1.040174e-01	ci left: 4.284418e-02	ci right 4.757773e-02	k: 1355	n:30000
Cons ci ratio: 3.833086e-02	ci left: 2.535196e-01	ci right 2.634606e-01	k: 7754	n:30000
KS ci ratio: 1.318969e-01	ci left: 2.671071e-02	ci right 3.051465e-02	k: 857	n:30000
HYDIN   30000 perm   26 sec   (1161 perm/sec)   p_kst 2.856667e-02   p_cons 2.584667e-01   p_joint 4.516667e-02

Joint ci ratio: 1.078423e-01	ci left: 3.024808e-02	ci right 3.372030e-02	k: 1278	n:40000
Cons ci ratio: 3.316742e-02	ci left: 2.545130e-01	ci right 2.631220e-01	k: 10352	n:40000
KS ci ratio: 1.137159e-01	ci left: 2.720712e-02	ci right 3.051175e-02	k: 1153	n:40000
HYDIN   40000 perm   33 sec   (1217 perm/sec)   p_kst 2.882500e-02   p_cons 2.588000e-01   p_joint 3.195000e-02

Joint ci ratio: 7.902781e-02	ci left: 4.504354e-02	ci right 4.876929e-02	k: 2344	n:50000
Cons ci ratio: 2.957836e-02	ci left: 2.560996e-01	ci right 2.638083e-01	k: 12997	n:50000
KS ci ratio: 1.025372e-01	ci left: 2.694191e-02	ci right 2.987318e-02	k: 1419	n:50000
HYDIN   50000 perm   40 sec   (1239 perm/sec)   p_kst 2.838000e-02   p_cons 2.599400e-01   p_joint 4.688000e-02

Joint ci ratio: 7.235840e-02	ci left: 4.494344e-02	ci right 4.833391e-02	k: 2797	n:60000
Cons ci ratio: 2.692845e-02	ci left: 2.574726e-01	ci right 2.645172e-01	k: 15659	n:60000
KS ci ratio: 9.423134e-02	ci left: 2.671079e-02	ci right 2.936846e-02	k: 1681	n:60000
HYDIN   60000 perm   49 sec   (1219 perm/sec)   p_kst 2.801667e-02   p_cons 2.609833e-01   p_joint 4.661667e-02

Outputting figure to mutsig2_images.part000000000082/HYDIN.55_15715_60000_0.028017_0.26098_0.046617.png
                gene_name: HYDIN
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.048 

Current progress: 2 percent done.
HUWE1
Processing conservation and coverage...
74% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.336069e-02	ci left: 5.701540e-01	ci right 5.895994e-01	k: 5799	n:10000
KS ci ratio: 2.151493e-02	ci left: 7.601055e-01	ci right 7.767378e-01	k: 7685	n:10000
HUWE1   10000 perm   5 sec   (2038 perm/sec)   p_kst 7.685000e-01   p_cons 5.799000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HUWE1.18_13449_10000_0.7685_0.5799_1.png
                gene_name: HUWE1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
HTT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
Cons ci ratio: 1.835874e-01	ci left: 3.958555e-02	ci right 4.768301e-02	k: 435	n:10000
KS ci ratio: 3.631366e-02	ci left: 5.282688e-01	ci right 5.479090e-01	k: 5381	n:10000
HTT   10000 perm   3 sec   (2902 perm/sec)   p_kst 5.381000e-01   p_cons 4.350000e-02   p_joint 1.789000e-01

Joint ci ratio: 4.968611e-02	ci left: 2.314175e-01	ci right 2.432590e-01	k: 4746	n:20000
Cons ci ratio: 1.136954e-01	ci left: 5.290189e-02	ci right 5.932793e-02	k: 1121	n:20000
KS ci ratio: 2.578544e-02	ci left: 5.291087e-01	ci right 5.429808e-01	k: 10721	n:20000
HTT   20000 perm   7 sec   (2695 perm/sec)   p_kst 5.360500e-01   p_cons 5.605000e-02   p_joint 2.373000e-01

Joint ci ratio: 4.057801e-02	ci left: 2.324287e-01	ci right 2.420889e-01	k: 7117	n:30000
Cons ci ratio: 9.481852e-02	ci left: 5.133870e-02	ci right 5.648146e-02	k: 1616	n:30000
KS ci ratio: 2.088618e-02	ci left: 5.343733e-01	ci right 5.456857e-01	k: 16201	n:30000
HTT   30000 perm   11 sec   (2611 perm/sec)   p_kst 5.400333e-01   p_cons 5.386667e-02   p_joint 2.372333e-01

Outputting figure to mutsig2_images.part000000000082/HTT.12_9697_30000_0.54003_0.053867_0.23723.png
                gene_name: HTT
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 5 percent done.
HSPA1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.748669e-03	ci left: 9.678372e-01	ci right 9.744845e-01	k: 9713	n:10000
KS ci ratio: 1.393192e-02	ci left: 8.815532e-01	ci right 8.940199e-01	k: 8879	n:10000
HSPA1L   10000 perm   2 sec   (5084 perm/sec)   p_kst 8.879000e-01   p_cons 9.713000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HSPA1L.9_1930_10000_0.8879_0.9713_1.png
                gene_name: HSPA1L
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
HSPG2
Processing conservation and coverage...
73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.222915e-02	ci left: 1.458981e-01	ci right 1.601047e-01	k: 1529	n:10000
Cons ci ratio: 9.219358e-02	ci left: 1.459962e-01	ci right 1.602065e-01	k: 1530	n:10000
KS ci ratio: 8.200305e-02	ci left: 1.783175e-01	ci right 1.936658e-01	k: 1859	n:10000
HSPG2   10000 perm   5 sec   (2191 perm/sec)   p_kst 1.859000e-01   p_cons 1.530000e-01   p_joint 1.529000e-01

Outputting figure to mutsig2_images.part000000000082/HSPG2.9_13564_10000_0.1859_0.153_0.1529.png
                gene_name: HSPG2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 9 percent done.
HTR2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.243755e-02	ci left: 3.489937e-01	ci right 3.678888e-01	k: 3584	n:10000
Cons ci ratio: 4.299014e-02	ci left: 4.441065e-01	ci right 4.637203e-01	k: 4539	n:10000
KS ci ratio: 1.005180e-01	ci left: 1.253257e-01	ci right 1.386894e-01	k: 1319	n:10000
HTR2C   10000 perm   2 sec   (5775 perm/sec)   p_kst 1.319000e-01   p_cons 4.539000e-01   p_joint 3.584000e-01

Joint ci ratio: 4.827996e-02	ci left: 2.418782e-01	ci right 2.538952e-01	k: 4957	n:20000
Cons ci ratio: 2.978919e-02	ci left: 4.570691e-01	ci right 4.709413e-01	k: 9280	n:20000
KS ci ratio: 7.212038e-02	ci left: 1.240390e-01	ci right 1.333692e-01	k: 2573	n:20000
HTR2C   20000 perm   4 sec   (5048 perm/sec)   p_kst 1.286500e-01   p_cons 4.640000e-01   p_joint 2.478500e-01

Outputting figure to mutsig2_images.part000000000082/HTR2C.8_1393_20000_0.12865_0.464_0.24785.png
                gene_name: HTR2C
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 11 percent done.
HYOU1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.373646e-02	ci left: 7.228992e-01	ci right 7.403656e-01	k: 7317	n:10000
Cons ci ratio: 5.012518e-02	ci left: 3.698758e-01	ci right 3.889945e-01	k: 3794	n:10000
KS ci ratio: 2.485708e-02	ci left: 7.042245e-01	ci right 7.220512e-01	k: 7132	n:10000
HYOU1   10000 perm   2 sec   (4962 perm/sec)   p_kst 7.132000e-01   p_cons 3.794000e-01   p_joint 7.317000e-01

Outputting figure to mutsig2_images.part000000000082/HYOU1.8_3100_10000_0.7132_0.3794_0.7317.png
                gene_name: HYOU1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 12 percent done.
HTR1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.917816e-01	ci left: 3.624378e-02	ci right 4.402702e-02	k: 400	n:10000
Cons ci ratio: 1.948389e-01	ci left: 3.509982e-02	ci right 4.277176e-02	k: 388	n:10000
KS ci ratio: 1.103741e-01	ci left: 1.057850e-01	ci right 1.182420e-01	k: 1119	n:10000
HTR1E   10000 perm   2 sec   (5396 perm/sec)   p_kst 1.119000e-01   p_cons 3.880000e-02   p_joint 4.000000e-02

Joint ci ratio: 1.474078e-01	ci left: 3.162770e-02	ci right 3.670891e-02	k: 682	n:20000
Cons ci ratio: 1.354374e-01	ci left: 3.747135e-02	ci right 4.296335e-02	k: 803	n:20000
KS ci ratio: 7.974153e-02	ci left: 1.034850e-01	ci right 1.121294e-01	k: 2155	n:20000
HTR1E   20000 perm   4 sec   (4741 perm/sec)   p_kst 1.077500e-01   p_cons 4.015000e-02   p_joint 3.410000e-02

Joint ci ratio: 1.518392e-01	ci left: 2.008103e-02	ci right 2.341249e-02	k: 651	n:30000
Cons ci ratio: 1.119459e-01	ci left: 3.706442e-02	ci right 4.149204e-02	k: 1177	n:30000
KS ci ratio: 6.558744e-02	ci left: 1.028995e-01	ci right 1.099103e-01	k: 3191	n:30000
HTR1E   30000 perm   7 sec   (4481 perm/sec)   p_kst 1.063667e-01   p_cons 3.923333e-02   p_joint 2.170000e-02

Joint ci ratio: 1.236102e-01	ci left: 2.300709e-02	ci right 2.606247e-02	k: 980	n:40000
Cons ci ratio: 1.031064e-01	ci left: 3.307405e-02	ci right 3.669388e-02	k: 1394	n:40000
KS ci ratio: 5.651862e-02	ci left: 1.043078e-01	ci right 1.103994e-01	k: 4293	n:40000
HTR1E   40000 perm   9 sec   (4328 perm/sec)   p_kst 1.073250e-01   p_cons 3.485000e-02   p_joint 2.450000e-02

Joint ci ratio: 9.265584e-02	ci left: 3.295644e-02	ci right 3.617789e-02	k: 1727	n:50000
Cons ci ratio: 8.561491e-02	ci left: 3.851459e-02	ci right 4.197904e-02	k: 2011	n:50000
KS ci ratio: 4.986507e-02	ci left: 1.072504e-01	ci right 1.127550e-01	k: 5499	n:50000
HTR1E   50000 perm   12 sec   (4239 perm/sec)   p_kst 1.099800e-01   p_cons 4.022000e-02   p_joint 3.454000e-02

Outputting figure to mutsig2_images.part000000000082/HTR1E.7_1102_50000_0.10998_0.04022_0.03454.png
                gene_name: HTR1E
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 14 percent done.
HTR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.750623e-02	ci left: 5.121545e-01	ci right 5.318327e-01	k: 5220	n:10000
Cons ci ratio: 2.191363e-02	ci left: 7.534265e-01	ci right 7.702207e-01	k: 7619	n:10000
KS ci ratio: 4.614221e-02	ci left: 4.094040e-01	ci right 4.288431e-01	k: 4191	n:10000
HTR7   10000 perm   2 sec   (5668 perm/sec)   p_kst 4.191000e-01   p_cons 7.619000e-01   p_joint 5.220000e-01

Outputting figure to mutsig2_images.part000000000082/HTR7.7_1460_10000_0.4191_0.7619_0.522.png
                gene_name: HTR7
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 16 percent done.
HTRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.505740e-02	ci left: 2.061931e-01	ci right 2.223737e-01	k: 2142	n:10000
Cons ci ratio: 3.979435e-02	ci left: 4.825547e-01	ci right 5.022497e-01	k: 4924	n:10000
KS ci ratio: 1.091164e-01	ci left: 1.080293e-01	ci right 1.205964e-01	k: 1142	n:10000
HTRA1   10000 perm   2 sec   (5687 perm/sec)   p_kst 1.142000e-01   p_cons 4.924000e-01   p_joint 2.142000e-01

Joint ci ratio: 6.201693e-02	ci left: 1.613115e-01	ci right 1.716857e-01	k: 3329	n:20000
Cons ci ratio: 2.803707e-02	ci left: 4.872972e-01	ci right 5.012045e-01	k: 9885	n:20000
KS ci ratio: 7.554461e-02	ci left: 1.141498e-01	ci right 1.231614e-01	k: 2372	n:20000
HTRA1   20000 perm   4 sec   (5037 perm/sec)   p_kst 1.186000e-01   p_cons 4.942500e-01   p_joint 1.664500e-01

Outputting figure to mutsig2_images.part000000000082/HTRA1.7_1479_20000_0.1186_0.49425_0.16645.png
                gene_name: HTRA1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 18 percent done.
IBTK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.298081e-02	ci left: 2.156624e-01	ci right 2.320987e-01	k: 2238	n:10000
Cons ci ratio: 2.109753e-02	ci left: 7.670911e-01	ci right 7.835482e-01	k: 7754	n:10000
KS ci ratio: 9.495584e-02	ci left: 1.386431e-01	ci right 1.525641e-01	k: 1455	n:10000
IBTK   10000 perm   2 sec   (4446 perm/sec)   p_kst 1.455000e-01   p_cons 7.754000e-01   p_joint 2.238000e-01

Outputting figure to mutsig2_images.part000000000082/IBTK.7_4174_10000_0.1455_0.7754_0.2238.png
                gene_name: IBTK
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 20 percent done.
IDE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.410837e-02	ci left: 4.314365e-01	ci right 4.509978e-01	k: 4412	n:10000
KS ci ratio: 2.043634e-02	ci left: 7.781330e-01	ci right 7.943000e-01	k: 7863	n:10000
IDE   10000 perm   2 sec   (4651 perm/sec)   p_kst 7.863000e-01   p_cons 4.412000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/IDE.7_3160_10000_0.7863_0.4412_1.png
                gene_name: IDE
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
IDH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.879644e-02	ci left: 4.952504e-01	ci right 5.149466e-01	k: 5051	n:10000
KS ci ratio: 1.011880e-02	ci left: 9.326804e-01	ci right 9.422628e-01	k: 9376	n:10000
IDH2   10000 perm   2 sec   (5458 perm/sec)   p_kst 9.376000e-01   p_cons 5.051000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/IDH2.7_1403_10000_0.9376_0.5051_1.png
                gene_name: IDH2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
HSPA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.061291e-01	ci left: 3.129396e-02	ci right 3.858023e-02	k: 348	n:10000
Cons ci ratio: 5.227834e-02	ci left: 3.503853e-01	ci right 3.692964e-01	k: 3598	n:10000
KS ci ratio: 2.607453e-01	ci left: 1.921493e-02	ci right 2.506805e-02	k: 220	n:10000
HSPA4   10000 perm   2 sec   (5025 perm/sec)   p_kst 2.200000e-02   p_cons 3.598000e-01   p_joint 3.480000e-02

Joint ci ratio: 1.634610e-01	ci left: 2.566144e-02	ci right 3.027716e-02	k: 558	n:20000
Cons ci ratio: 3.847343e-02	ci left: 3.350756e-01	ci right 3.482705e-01	k: 6833	n:20000
KS ci ratio: 1.800525e-01	ci left: 2.106263e-02	ci right 2.527757e-02	k: 462	n:20000
HSPA4   20000 perm   4 sec   (4472 perm/sec)   p_kst 2.310000e-02   p_cons 3.416500e-01   p_joint 2.790000e-02

Joint ci ratio: 9.938418e-02	ci left: 4.684472e-02	ci right 5.177636e-02	k: 1478	n:30000
Cons ci ratio: 3.127658e-02	ci left: 3.382579e-01	ci right 3.490391e-01	k: 10309	n:30000
KS ci ratio: 1.458884e-01	ci left: 2.178327e-02	ci right 2.524319e-02	k: 704	n:30000
HSPA4   30000 perm   7 sec   (4233 perm/sec)   p_kst 2.346667e-02   p_cons 3.436333e-01   p_joint 4.926667e-02

Joint ci ratio: 1.011324e-01	ci left: 3.436636e-02	ci right 3.805137e-02	k: 1447	n:40000
Cons ci ratio: 2.701840e-02	ci left: 3.401161e-01	ci right 3.494564e-01	k: 13791	n:40000
KS ci ratio: 1.281706e-01	ci left: 2.138366e-02	ci right 2.433617e-02	k: 913	n:40000
HSPA4   40000 perm   10 sec   (4105 perm/sec)   p_kst 2.282500e-02   p_cons 3.447750e-01   p_joint 3.617500e-02

Joint ci ratio: 9.053363e-02	ci left: 3.450149e-02	ci right 3.779265e-02	k: 1806	n:50000
Cons ci ratio: 2.410834e-02	ci left: 3.416899e-01	ci right 3.500480e-01	k: 17293	n:50000
KS ci ratio: 1.144092e-01	ci left: 2.162605e-02	ci right 2.426974e-02	k: 1146	n:50000
HSPA4   50000 perm   12 sec   (4042 perm/sec)   p_kst 2.292000e-02   p_cons 3.458600e-01   p_joint 3.612000e-02

Joint ci ratio: 8.228022e-02	ci left: 3.494825e-02	ci right 3.796347e-02	k: 2186	n:60000
Cons ci ratio: 2.204742e-02	ci left: 3.412454e-01	ci right 3.488696e-01	k: 20703	n:60000
KS ci ratio: 1.048864e-01	ci left: 2.155548e-02	ci right 2.395765e-02	k: 1364	n:60000
HSPA4   60000 perm   15 sec   (3972 perm/sec)   p_kst 2.273333e-02   p_cons 3.450500e-01   p_joint 3.643333e-02

Joint ci ratio: 7.157786e-02	ci left: 3.961318e-02	ci right 4.256787e-02	k: 2875	n:70000
Cons ci ratio: 2.045049e-02	ci left: 3.406798e-01	ci right 3.477331e-01	k: 24094	n:70000
KS ci ratio: 9.759314e-02	ci left: 2.142800e-02	ci right 2.364039e-02	k: 1576	n:70000
HSPA4   70000 perm   18 sec   (3907 perm/sec)   p_kst 2.251429e-02   p_cons 3.442000e-01   p_joint 4.107143e-02

Outputting figure to mutsig2_images.part000000000082/HSPA4.6_2599_70000_0.022514_0.3442_0.041071.png
                gene_name: HSPA4
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.043 

Current progress: 25 percent done.
HTR3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.475807e-02	ci left: 8.692784e-01	ci right 8.823018e-01	k: 8759	n:10000
Cons ci ratio: 4.348773e-02	ci left: 4.384192e-01	ci right 4.580110e-01	k: 4482	n:10000
KS ci ratio: 2.691388e-02	ci left: 6.703529e-01	ci right 6.887424e-01	k: 6796	n:10000
HTR3A   10000 perm   2 sec   (6141 perm/sec)   p_kst 6.796000e-01   p_cons 4.482000e-01   p_joint 8.759000e-01

Outputting figure to mutsig2_images.part000000000082/HTR3A.6_1609_10000_0.6796_0.4482_0.8759.png
                gene_name: HTR3A
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 27 percent done.
HTR3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.880608e-01	ci left: 8.143597e-03	ci right 1.214950e-02	k: 100	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 4.332111e-02	ci left: 4.403148e-01	ci right 4.599142e-01	k: 4501	n:10000
HTR3B   10000 perm   2 sec   (6149 perm/sec)   p_kst 4.501000e-01   p_cons 1.000000e-04   p_joint 1.000000e-02

Joint ci ratio: 3.552752e-01	ci left: 4.977027e-03	ci right 7.170311e-03	k: 120	n:20000
Cons ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
KS ci ratio: 3.068481e-02	ci left: 4.423890e-01	ci right 4.562258e-01	k: 8986	n:20000
HTR3B   20000 perm   4 sec   (5425 perm/sec)   p_kst 4.493000e-01   p_cons 1.000000e-04   p_joint 6.000000e-03

Joint ci ratio: 3.443882e-01	ci left: 3.560779e-03	ci right 5.071034e-03	k: 128	n:30000
Cons ci ratio: 1.752902e+00	ci left: 3.633000e-05	ci right 3.413508e-04	k: 4	n:30000
KS ci ratio: 2.489840e-02	ci left: 4.467559e-01	ci right 4.580533e-01	k: 13572	n:30000
HTR3B   30000 perm   6 sec   (4996 perm/sec)   p_kst 4.524000e-01   p_cons 1.333333e-04   p_joint 4.266667e-03

Joint ci ratio: 3.603281e-01	ci left: 2.419637e-03	ci right 3.504518e-03	k: 117	n:40000
Cons ci ratio: 1.752946e+00	ci left: 2.724728e-05	ci right 2.560197e-04	k: 4	n:40000
KS ci ratio: 2.157710e-02	ci left: 4.471888e-01	ci right 4.569682e-01	k: 18083	n:40000
HTR3B   40000 perm   8 sec   (4864 perm/sec)   p_kst 4.520750e-01   p_cons 1.000000e-04   p_joint 2.925000e-03

Joint ci ratio: 3.332284e-01	ci left: 2.300894e-03	ci right 3.238319e-03	k: 137	n:50000
Cons ci ratio: 1.600221e+00	ci left: 3.247050e-05	ci right 2.333511e-04	k: 5	n:50000
KS ci ratio: 1.933421e-02	ci left: 4.468113e-01	ci right 4.555544e-01	k: 22559	n:50000
HTR3B   50000 perm   11 sec   (4750 perm/sec)   p_kst 4.511800e-01   p_cons 1.000000e-04   p_joint 2.740000e-03

Joint ci ratio: 3.822148e-01	ci left: 1.416472e-03	ci right 2.099838e-03	k: 104	n:60000
Cons ci ratio: 1.481522e+00	ci left: 3.669909e-05	ci right 2.176451e-04	k: 6	n:60000
KS ci ratio: 1.763478e-02	ci left: 4.476121e-01	ci right 4.555926e-01	k: 27096	n:60000
HTR3B   60000 perm   13 sec   (4641 perm/sec)   p_kst 4.516000e-01   p_cons 1.000000e-04   p_joint 1.733333e-03

Joint ci ratio: 3.575360e-01	ci left: 1.408504e-03	ci right 2.033963e-03	k: 119	n:70000
Cons ci ratio: 1.481536e+00	ci left: 3.145626e-05	ci right 1.865545e-04	k: 6	n:70000
KS ci ratio: 1.635498e-02	ci left: 4.470519e-01	ci right 4.544379e-01	k: 31552	n:70000
HTR3B   70000 perm   15 sec   (4534 perm/sec)   p_kst 4.507429e-01   p_cons 8.571429e-05   p_joint 1.700000e-03

Joint ci ratio: 3.409085e-01	ci left: 1.369286e-03	ci right 1.942828e-03	k: 131	n:80000
Cons ci ratio: 1.385851e+00	ci left: 3.518024e-05	ci right 1.802751e-04	k: 7	n:80000
KS ci ratio: 1.531706e-02	ci left: 4.466981e-01	ci right 4.536055e-01	k: 36012	n:80000
HTR3B   80000 perm   18 sec   (4443 perm/sec)   p_kst 4.501500e-01   p_cons 8.750000e-05   p_joint 1.637500e-03

Joint ci ratio: 3.346513e-01	ci left: 1.267975e-03	ci right 1.787228e-03	k: 136	n:90000
Cons ci ratio: 1.385860e+00	ci left: 3.127125e-05	ci right 1.602453e-04	k: 7	n:90000
KS ci ratio: 1.445131e-02	ci left: 4.465460e-01	ci right 4.530572e-01	k: 40482	n:90000
HTR3B   90000 perm   21 sec   (4333 perm/sec)   p_kst 4.498000e-01   p_cons 7.777778e-05   p_joint 1.511111e-03

Joint ci ratio: 3.422659e-01	ci left: 1.086257e-03	ci right 1.543456e-03	k: 130	n:100000
Cons ci ratio: 1.306601e+00	ci left: 3.453893e-05	ci right 1.576258e-04	k: 8	n:100000
KS ci ratio: 1.370226e-02	ci left: 4.469830e-01	ci right 4.531599e-01	k: 45007	n:100000
HTR3B   100000 perm   24 sec   (4243 perm/sec)   p_kst 4.500700e-01   p_cons 8.000000e-05   p_joint 1.300000e-03

Joint ci ratio: 3.287452e-01	ci left: 1.079085e-03	ci right 1.511535e-03	k: 141	n:110000
Cons ci ratio: 1.306607e+00	ci left: 3.139898e-05	ci right 1.432967e-04	k: 8	n:110000
KS ci ratio: 1.307439e-02	ci left: 4.467570e-01	ci right 4.526456e-01	k: 49467	n:110000
HTR3B   110000 perm   26 sec   (4167 perm/sec)   p_kst 4.497000e-01   p_cons 7.272727e-05   p_joint 1.281818e-03

Joint ci ratio: 3.156785e-01	ci left: 1.081077e-03	ci right 1.493631e-03	k: 153	n:120000
Cons ci ratio: 1.239556e+00	ci left: 3.429533e-05	ci right 1.423686e-04	k: 9	n:120000
KS ci ratio: 1.253107e-02	ci left: 4.463578e-01	ci right 4.519947e-01	k: 53901	n:120000
HTR3B   120000 perm   29 sec   (4093 perm/sec)   p_kst 4.491750e-01   p_cons 7.500000e-05   p_joint 1.275000e-03

Joint ci ratio: 3.097113e-01	ci left: 1.040446e-03	ci right 1.428507e-03	k: 159	n:130000
Cons ci ratio: 1.239560e+00	ci left: 3.165719e-05	ci right 1.314175e-04	k: 9	n:130000
KS ci ratio: 1.202821e-02	ci left: 4.469316e-01	ci right 4.523476e-01	k: 58453	n:130000
HTR3B   130000 perm   32 sec   (4023 perm/sec)   p_kst 4.496385e-01   p_cons 6.923077e-05   p_joint 1.223077e-03

Joint ci ratio: 3.177802e-01	ci left: 9.134739e-04	ci right 1.264859e-03	k: 151	n:140000
Cons ci ratio: 1.131554e+00	ci left: 3.922321e-05	ci right 1.405816e-04	k: 11	n:140000
KS ci ratio: 1.190220e-02	ci left: 4.339498e-01	ci right 4.391528e-01	k: 61117	n:140000
HTR3B   140000 perm   35 sec   (3948 perm/sec)   p_kst 4.365500e-01   p_cons 7.857143e-05   p_joint 1.078571e-03

Joint ci ratio: 3.397553e-01	ci left: 7.363392e-04	ci right 1.043482e-03	k: 132	n:150000
Cons ci ratio: 1.131557e+00	ci left: 3.660829e-05	ci right 1.312098e-04	k: 11	n:150000
KS ci ratio: 1.150775e-02	ci left: 4.336483e-01	ci right 4.386741e-01	k: 65424	n:150000
HTR3B   150000 perm   39 sec   (3883 perm/sec)   p_kst 4.361600e-01   p_cons 7.333333e-05   p_joint 8.800000e-04

Joint ci ratio: 3.397647e-01	ci left: 6.903150e-04	ci right 9.782697e-04	k: 132	n:160000
Cons ci ratio: 9.799479e-01	ci left: 5.247208e-05	ci right 1.546217e-04	k: 15	n:160000
KS ci ratio: 1.114171e-02	ci left: 4.337556e-01	ci right 4.386217e-01	k: 69790	n:160000
HTR3B   160000 perm   42 sec   (3816 perm/sec)   p_kst 4.361875e-01   p_cons 9.375000e-05   p_joint 8.250000e-04

Joint ci ratio: 3.311630e-01	ci left: 6.874168e-04	ci right 9.653566e-04	k: 139	n:170000
Cons ci ratio: 9.506893e-01	ci left: 5.379729e-05	ci right 1.528367e-04	k: 16	n:170000
KS ci ratio: 1.080336e-02	ci left: 4.340877e-01	ci right 4.388086e-01	k: 74196	n:170000
HTR3B   170000 perm   45 sec   (3750 perm/sec)   p_kst 4.364471e-01   p_cons 9.411765e-05   p_joint 8.176471e-04

Joint ci ratio: 3.842755e-01	ci left: 4.670896e-04	ci right 6.939436e-04	k: 103	n:180000
Cons ci ratio: 8.553619e-01	ci left: 6.787083e-05	ci right 1.715969e-04	k: 20	n:180000
KS ci ratio: 1.050782e-02	ci left: 4.337407e-01	ci right 4.383280e-01	k: 78486	n:180000
HTR3B   180000 perm   49 sec   (3691 perm/sec)   p_kst 4.360333e-01   p_cons 1.111111e-04   p_joint 5.722222e-04

Joint ci ratio: 3.686519e-01	ci left: 4.853948e-04	ci right 7.092475e-04	k: 112	n:190000
Cons ci ratio: 8.173249e-01	ci left: 7.256602e-05	ci right 1.753014e-04	k: 22	n:190000
KS ci ratio: 1.023625e-02	ci left: 4.333846e-01	ci right 4.378489e-01	k: 82767	n:190000
HTR3B   190000 perm   52 sec   (3622 perm/sec)   p_kst 4.356158e-01   p_cons 1.157895e-04   p_joint 5.894737e-04

Joint ci ratio: 3.670361e-01	ci left: 4.656619e-04	ci right 6.792470e-04	k: 113	n:200000
Cons ci ratio: 8.001166e-01	ci left: 7.290149e-05	ci right 1.725515e-04	k: 23	n:200000
KS ci ratio: 9.974141e-03	ci left: 4.335853e-01	ci right 4.379366e-01	k: 87152	n:200000
HTR3B   200000 perm   56 sec   (3559 perm/sec)   p_kst 4.357600e-01   p_cons 1.150000e-04   p_joint 5.650000e-04

Joint ci ratio: 3.638615e-01	ci left: 4.521362e-04	ci right 6.572977e-04	k: 115	n:210000
Cons ci ratio: 7.407592e-01	ci left: 8.473104e-05	ci right 1.870592e-04	k: 27	n:210000
KS ci ratio: 9.734485e-03	ci left: 4.336016e-01	ci right 4.378478e-01	k: 91502	n:210000
HTR3B   210000 perm   60 sec   (3506 perm/sec)   p_kst 4.357238e-01   p_cons 1.285714e-04   p_joint 5.476190e-04

Joint ci ratio: 3.562648e-01	ci left: 4.522561e-04	ci right 6.521951e-04	k: 120	n:220000
Cons ci ratio: 7.407615e-01	ci left: 8.087955e-05	ci right 1.785568e-04	k: 27	n:220000
KS ci ratio: 9.508677e-03	ci left: 4.337538e-01	ci right 4.379024e-01	k: 95882	n:220000
HTR3B   220000 perm   64 sec   (3447 perm/sec)   p_kst 4.358273e-01   p_cons 1.227273e-04   p_joint 5.454545e-04

Joint ci ratio: 3.899681e-01	ci left: 3.537700e-04	ci right 5.287873e-04	k: 100	n:230000
Cons ci ratio: 7.278783e-01	ci left: 8.089624e-05	ci right 1.759422e-04	k: 28	n:230000
KS ci ratio: 9.302985e-03	ci left: 4.336244e-01	ci right 4.376816e-01	k: 100200	n:230000
HTR3B   230000 perm   68 sec   (3396 perm/sec)   p_kst 4.356522e-01   p_cons 1.217391e-04   p_joint 4.347826e-04

Joint ci ratio: 3.806592e-01	ci left: 3.578452e-04	ci right 5.295960e-04	k: 105	n:240000
Cons ci ratio: 7.040058e-01	ci left: 8.433851e-05	ci right 1.784405e-04	k: 30	n:240000
KS ci ratio: 9.101445e-03	ci left: 4.339731e-01	ci right 4.379451e-01	k: 104630	n:240000
HTR3B   240000 perm   72 sec   (3349 perm/sec)   p_kst 4.359583e-01   p_cons 1.250000e-04   p_joint 4.375000e-04

Joint ci ratio: 3.771199e-01	ci left: 3.507692e-04	ci right 5.171711e-04	k: 107	n:250000
Cons ci ratio: 7.040077e-01	ci left: 8.096491e-05	ci right 1.713031e-04	k: 30	n:250000
KS ci ratio: 8.912094e-03	ci left: 4.343148e-01	ci right 4.382067e-01	k: 109065	n:250000
HTR3B   250000 perm   76 sec   (3304 perm/sec)   p_kst 4.362600e-01   p_cons 1.200000e-04   p_joint 4.280000e-04

Joint ci ratio: 3.686817e-01	ci left: 3.547069e-04	ci right 5.183046e-04	k: 112	n:260000
Cons ci ratio: 6.929207e-01	ci left: 8.101292e-05	ci right 1.692343e-04	k: 31	n:260000
KS ci ratio: 8.349629e-03	ci left: 4.568793e-01	ci right 4.607139e-01	k: 119287	n:260000
HTR3B   260000 perm   80 sec   (3258 perm/sec)   p_kst 4.587962e-01   p_cons 1.192308e-04   p_joint 4.307692e-04

Joint ci ratio: 3.638840e-01	ci left: 3.516579e-04	ci right 5.112378e-04	k: 115	n:270000
Cons ci ratio: 6.625568e-01	ci left: 8.720889e-05	ci right 1.759645e-04	k: 34	n:270000
KS ci ratio: 8.194952e-03	ci left: 4.568302e-01	ci right 4.605929e-01	k: 123852	n:270000
HTR3B   270000 perm   84 sec   (3215 perm/sec)   p_kst 4.587111e-01   p_cons 1.259259e-04   p_joint 4.259259e-04

Joint ci ratio: 3.548222e-01	ci left: 3.585932e-04	ci right 5.163338e-04	k: 121	n:280000
Cons ci ratio: 6.532902e-01	ci left: 8.706858e-05	ci right 1.738405e-04	k: 35	n:280000
KS ci ratio: 8.048218e-03	ci left: 4.568066e-01	ci right 4.605014e-01	k: 128423	n:280000
HTR3B   280000 perm   88 sec   (3172 perm/sec)   p_kst 4.586536e-01   p_cons 1.250000e-04   p_joint 4.321429e-04

Joint ci ratio: 3.548249e-01	ci left: 3.462275e-04	ci right 4.985299e-04	k: 121	n:290000
Cons ci ratio: 6.532917e-01	ci left: 8.406616e-05	ci right 1.678461e-04	k: 35	n:290000
KS ci ratio: 7.907116e-03	ci left: 4.569093e-01	ci right 4.605398e-01	k: 133030	n:290000
HTR3B   290000 perm   93 sec   (3129 perm/sec)   p_kst 4.587241e-01   p_cons 1.206897e-04   p_joint 4.172414e-04

Joint ci ratio: 2.097104e-01	ci left: 1.041372e-03	ci right 1.288427e-03	k: 348	n:300000
Cons ci ratio: 6.532930e-01	ci left: 8.126391e-05	ci right 1.622514e-04	k: 35	n:300000
KS ci ratio: 7.792779e-03	ci left: 4.557560e-01	ci right 4.593248e-01	k: 137262	n:300000
HTR3B   300000 perm   97 sec   (3087 perm/sec)   p_kst 4.575400e-01   p_cons 1.166667e-04   p_joint 1.160000e-03

Joint ci ratio: 2.079325e-01	ci left: 1.026121e-03	ci right 1.267231e-03	k: 354	n:310000
Cons ci ratio: 6.444045e-01	ci left: 8.133663e-05	ci right 1.607679e-04	k: 36	n:310000
KS ci ratio: 7.670615e-03	ci left: 4.554903e-01	ci right 4.590008e-01	k: 141746	n:310000
HTR3B   310000 perm   102 sec   (3050 perm/sec)   p_kst 4.572452e-01   p_cons 1.161290e-04   p_joint 1.141935e-03

Joint ci ratio: 2.047842e-01	ci left: 1.026654e-03	ci right 1.263779e-03	k: 365	n:320000
Cons ci ratio: 6.444058e-01	ci left: 7.879482e-05	ci right 1.557441e-04	k: 36	n:320000
KS ci ratio: 7.547694e-03	ci left: 4.556571e-01	ci right 4.591124e-01	k: 146363	n:320000
HTR3B   320000 perm   106 sec   (3012 perm/sec)   p_kst 4.573844e-01   p_cons 1.125000e-04   p_joint 1.140625e-03

Joint ci ratio: 2.009756e-01	ci left: 1.035813e-03	ci right 1.270059e-03	k: 379	n:330000
Cons ci ratio: 6.276643e-01	ci left: 8.148931e-05	ci right 1.580511e-04	k: 38	n:330000
KS ci ratio: 7.431225e-03	ci left: 4.557658e-01	ci right 4.591683e-01	k: 150964	n:330000
HTR3B   330000 perm   111 sec   (2972 perm/sec)   p_kst 4.574667e-01   p_cons 1.151515e-04   p_joint 1.148485e-03

Joint ci ratio: 2.076505e-01	ci left: 9.383645e-04	ci right 1.158517e-03	k: 355	n:340000
Cons ci ratio: 6.197690e-01	ci left: 8.156833e-05	ci right 1.568034e-04	k: 39	n:340000
KS ci ratio: 7.323369e-03	ci left: 4.556391e-01	ci right 4.589911e-01	k: 155487	n:340000
HTR3B   340000 perm   116 sec   (2935 perm/sec)   p_kst 4.573147e-01   p_cons 1.147059e-04   p_joint 1.044118e-03

Joint ci ratio: 2.134329e-01	ci left: 8.601263e-04	ci right 1.068279e-03	k: 336	n:350000
Cons ci ratio: 5.977568e-01	ci left: 8.648677e-05	ci right 1.622017e-04	k: 42	n:350000
KS ci ratio: 7.219287e-03	ci left: 4.555742e-01	ci right 4.588779e-01	k: 160029	n:350000
HTR3B   350000 perm   121 sec   (2900 perm/sec)   p_kst 4.572257e-01   p_cons 1.200000e-04   p_joint 9.600000e-04

Joint ci ratio: 2.088342e-01	ci left: 8.756985e-04	ci right 1.082470e-03	k: 351	n:360000
Cons ci ratio: 5.909253e-01	ci left: 8.644384e-05	ci right 1.608875e-04	k: 43	n:360000
KS ci ratio: 7.117925e-03	ci left: 4.556244e-01	ci right 4.588818e-01	k: 164611	n:360000
HTR3B   360000 perm   126 sec   (2865 perm/sec)   p_kst 4.572528e-01   p_cons 1.194444e-04   p_joint 9.750000e-04

Joint ci ratio: 2.407171e-01	ci left: 6.300574e-04	ci right 8.049422e-04	k: 264	n:370000
Cons ci ratio: 5.909263e-01	ci left: 8.410749e-05	ci right 1.565393e-04	k: 43	n:370000
KS ci ratio: 7.023317e-03	ci left: 4.554884e-01	ci right 4.587014e-01	k: 169125	n:370000
HTR3B   370000 perm   131 sec   (2831 perm/sec)   p_kst 4.570946e-01   p_cons 1.162162e-04   p_joint 7.135135e-04

Joint ci ratio: 2.367302e-01	ci left: 6.357449e-04	ci right 8.088574e-04	k: 273	n:380000
Cons ci ratio: 5.779367e-01	ci left: 8.637840e-05	ci right 1.584535e-04	k: 45	n:380000
KS ci ratio: 6.929553e-03	ci left: 4.555625e-01	ci right 4.587329e-01	k: 173716	n:380000
HTR3B   380000 perm   136 sec   (2797 perm/sec)   p_kst 4.571474e-01   p_cons 1.184211e-04   p_joint 7.184211e-04

Joint ci ratio: 2.204276e-01	ci left: 7.209809e-04	ci right 9.019532e-04	k: 315	n:390000
Cons ci ratio: 5.717556e-01	ci left: 8.635454e-05	ci right 1.573240e-04	k: 46	n:390000
KS ci ratio: 6.941961e-03	ci left: 4.482609e-01	ci right 4.513860e-01	k: 175431	n:390000
HTR3B   390000 perm   141 sec   (2764 perm/sec)   p_kst 4.498231e-01   p_cons 1.179487e-04   p_joint 8.076923e-04

Joint ci ratio: 2.082532e-01	ci left: 7.928639e-04	ci right 9.794883e-04	k: 353	n:400000
Cons ci ratio: 5.435702e-01	ci left: 9.493355e-05	ci right 1.676356e-04	k: 51	n:400000
KS ci ratio: 6.854404e-03	ci left: 4.482974e-01	ci right 4.513833e-01	k: 179936	n:400000
HTR3B   400000 perm   146 sec   (2732 perm/sec)   p_kst 4.498400e-01   p_cons 1.275000e-04   p_joint 8.825000e-04

Joint ci ratio: 2.221982e-01	ci left: 6.742901e-04	ci right 8.450881e-04	k: 310	n:410000
Cons ci ratio: 5.237956e-01	ci left: 1.010589e-04	ci right 1.746064e-04	k: 55	n:410000
KS ci ratio: 6.773348e-03	ci left: 4.480935e-01	ci right 4.511413e-01	k: 184343	n:410000
HTR3B   410000 perm   152 sec   (2702 perm/sec)   p_kst 4.496171e-01   p_cons 1.341463e-04   p_joint 7.560976e-04

Joint ci ratio: 2.204340e-01	ci left: 6.694802e-04	ci right 8.375308e-04	k: 315	n:420000
Cons ci ratio: 5.237965e-01	ci left: 9.865273e-05	ci right 1.704492e-04	k: 55	n:420000
KS ci ratio: 6.690721e-03	ci left: 4.482232e-01	ci right 4.512346e-01	k: 188886	n:420000
HTR3B   420000 perm   157 sec   (2671 perm/sec)   p_kst 4.497286e-01   p_cons 1.309524e-04   p_joint 7.500000e-04

Joint ci ratio: 2.180324e-01	ci left: 6.692961e-04	ci right 8.352249e-04	k: 322	n:430000
Cons ci ratio: 5.060339e-01	ci left: 1.044517e-04	ci right 1.769865e-04	k: 59	n:430000
KS ci ratio: 6.612567e-03	ci left: 4.482332e-01	ci right 4.512093e-01	k: 193380	n:430000
HTR3B   430000 perm   163 sec   (2641 perm/sec)   p_kst 4.497209e-01   p_cons 1.372093e-04   p_joint 7.488372e-04

Joint ci ratio: 2.204378e-01	ci left: 6.390482e-04	ci right 7.994628e-04	k: 315	n:440000
Cons ci ratio: 5.060347e-01	ci left: 1.020777e-04	ci right 1.729641e-04	k: 59	n:440000
KS ci ratio: 6.538170e-03	ci left: 4.481612e-01	ci right 4.511031e-01	k: 197838	n:440000
HTR3B   440000 perm   168 sec   (2612 perm/sec)   p_kst 4.496318e-01   p_cons 1.340909e-04   p_joint 7.159091e-04

Joint ci ratio: 2.240150e-01	ci left: 6.038605e-04	ci right 7.582416e-04	k: 305	n:450000
Cons ci ratio: 4.978056e-01	ci left: 1.036908e-04	ci right 1.741234e-04	k: 61	n:450000
KS ci ratio: 6.465009e-03	ci left: 4.481858e-01	ci right 4.510949e-01	k: 202338	n:450000
HTR3B   450000 perm   174 sec   (2582 perm/sec)   p_kst 4.496400e-01   p_cons 1.355556e-04   p_joint 6.777778e-04

Joint ci ratio: 2.222074e-01	ci left: 6.009951e-04	ci right 7.532343e-04	k: 310	n:460000
Cons ci ratio: 4.899654e-01	ci left: 1.052427e-04	ci right 1.752235e-04	k: 63	n:460000
KS ci ratio: 6.392285e-03	ci left: 4.483616e-01	ci right 4.512390e-01	k: 206908	n:460000
HTR3B   460000 perm   180 sec   (2555 perm/sec)   p_kst 4.498000e-01   p_cons 1.369565e-04   p_joint 6.739130e-04

Joint ci ratio: 2.194031e-01	ci left: 6.042880e-04	ci right 7.551690e-04	k: 318	n:470000
Cons ci ratio: 4.861820e-01	ci left: 1.048692e-04	ci right 1.738830e-04	k: 64	n:470000
KS ci ratio: 6.325983e-03	ci left: 4.482154e-01	ci right 4.510618e-01	k: 211330	n:470000
HTR3B   470000 perm   186 sec   (2528 perm/sec)   p_kst 4.496383e-01   p_cons 1.361702e-04   p_joint 6.765957e-04

Joint ci ratio: 2.167024e-01	ci left: 6.074553e-04	ci right 7.570117e-04	k: 326	n:480000
Cons ci ratio: 4.824850e-01	ci left: 1.045132e-04	ci right 1.725964e-04	k: 65	n:480000
KS ci ratio: 6.260779e-03	ci left: 4.481483e-01	ci right 4.509649e-01	k: 215787	n:480000
HTR3B   480000 perm   192 sec   (2502 perm/sec)   p_kst 4.495562e-01   p_cons 1.354167e-04   p_joint 6.791667e-04

Joint ci ratio: 2.147415e-01	ci left: 6.066416e-04	ci right 7.544679e-04	k: 332	n:490000
Cons ci ratio: 4.788710e-01	ci left: 1.041737e-04	ci right 1.713605e-04	k: 66	n:490000
KS ci ratio: 6.196758e-03	ci left: 4.481473e-01	ci right 4.509350e-01	k: 220275	n:490000
HTR3B   490000 perm   198 sec   (2477 perm/sec)   p_kst 4.495408e-01   p_cons 1.346939e-04   p_joint 6.775510e-04

Joint ci ratio: 2.128328e-01	ci left: 6.058662e-04	ci right 7.520202e-04	k: 338	n:500000
Cons ci ratio: 4.753370e-01	ci left: 1.038496e-04	ci right 1.701722e-04	k: 67	n:500000
KS ci ratio: 6.135182e-03	ci left: 4.481045e-01	ci right 4.508641e-01	k: 224742	n:500000
HTR3B   500000 perm   204 sec   (2452 perm/sec)   p_kst 4.494840e-01   p_cons 1.340000e-04   p_joint 6.760000e-04

Joint ci ratio: 1.383110e-01	ci left: 1.463768e-03	ci right 1.683133e-03	k: 801	n:510000
Cons ci ratio: 4.684970e-01	ci left: 1.052684e-04	ci right 1.712203e-04	k: 69	n:510000
KS ci ratio: 6.075117e-03	ci left: 4.480870e-01	ci right 4.508194e-01	k: 229221	n:510000
HTR3B   510000 perm   210 sec   (2427 perm/sec)   p_kst 4.494529e-01   p_cons 1.352941e-04   p_joint 1.570588e-03

Joint ci ratio: 1.373728e-01	ci left: 1.456042e-03	ci right 1.672649e-03	k: 812	n:520000
Cons ci ratio: 4.651862e-01	ci left: 1.049408e-04	ci right 1.700754e-04	k: 70	n:520000
KS ci ratio: 6.017530e-03	ci left: 4.480089e-01	ci right 4.507148e-01	k: 233668	n:520000
HTR3B   520000 perm   216 sec   (2404 perm/sec)   p_kst 4.493615e-01   p_cons 1.346154e-04   p_joint 1.561538e-03

Joint ci ratio: 1.477474e-01	ci left: 1.228405e-03	ci right 1.426168e-03	k: 702	n:530000
Cons ci ratio: 4.619446e-01	ci left: 1.046271e-04	ci right 1.689722e-04	k: 71	n:530000
KS ci ratio: 5.962005e-03	ci left: 4.478960e-01	ci right 4.505762e-01	k: 238095	n:530000
HTR3B   530000 perm   223 sec   (2379 perm/sec)   p_kst 4.492358e-01   p_cons 1.339623e-04   p_joint 1.324528e-03

Joint ci ratio: 1.474345e-01	ci left: 1.211006e-03	ci right 1.405519e-03	k: 705	n:540000
Cons ci ratio: 4.556591e-01	ci left: 1.059651e-04	ci right 1.699721e-04	k: 73	n:540000
KS ci ratio: 5.906861e-03	ci left: 4.478819e-01	ci right 4.505371e-01	k: 242573	n:540000
HTR3B   540000 perm   229 sec   (2356 perm/sec)   p_kst 4.492093e-01   p_cons 1.351852e-04   p_joint 1.305556e-03

Joint ci ratio: 1.565854e-01	ci left: 1.049054e-03	ci right 1.228995e-03	k: 625	n:550000
Cons ci ratio: 4.496234e-01	ci left: 1.072601e-04	ci right 1.709300e-04	k: 75	n:550000
KS ci ratio: 5.853456e-03	ci left: 4.478484e-01	ci right 4.504794e-01	k: 247040	n:550000
HTR3B   550000 perm   236 sec   (2334 perm/sec)   p_kst 4.491636e-01   p_cons 1.363636e-04   p_joint 1.136364e-03

Joint ci ratio: 1.548629e-01	ci left: 1.054347e-03	ci right 1.233022e-03	k: 639	n:560000
Cons ci ratio: 4.466943e-01	ci left: 1.069289e-04	ci right 1.698638e-04	k: 76	n:560000
KS ci ratio: 5.801118e-03	ci left: 4.478466e-01	ci right 4.504539e-01	k: 251524	n:560000
HTR3B   560000 perm   242 sec   (2313 perm/sec)   p_kst 4.491500e-01   p_cons 1.357143e-04   p_joint 1.141071e-03

Joint ci ratio: 1.539045e-01	ci left: 1.049342e-03	ci right 1.225967e-03	k: 647	n:570000
Cons ci ratio: 4.410035e-01	ci left: 1.081695e-04	ci right 1.707822e-04	k: 78	n:570000
KS ci ratio: 5.749588e-03	ci left: 4.478941e-01	ci right 4.504784e-01	k: 256036	n:570000
HTR3B   570000 perm   249 sec   (2291 perm/sec)   p_kst 4.491860e-01   p_cons 1.368421e-04   p_joint 1.135088e-03

Joint ci ratio: 1.570932e-01	ci left: 9.881639e-04	ci right 1.158262e-03	k: 621	n:580000
Cons ci ratio: 4.382387e-01	ci left: 1.078377e-04	ci right 1.697516e-04	k: 79	n:580000
KS ci ratio: 5.700282e-03	ci left: 4.478641e-01	ci right 4.504260e-01	k: 260504	n:580000
HTR3B   580000 perm   256 sec   (2269 perm/sec)   p_kst 4.491448e-01   p_cons 1.362069e-04   p_joint 1.070690e-03

Joint ci ratio: 1.615774e-01	ci left: 9.160828e-04	ci right 1.078712e-03	k: 587	n:590000
Cons ci ratio: 4.328611e-01	ci left: 1.090280e-04	ci right 1.706338e-04	k: 81	n:590000
KS ci ratio: 5.651854e-03	ci left: 4.478675e-01	ci right 4.504076e-01	k: 264991	n:590000
HTR3B   590000 perm   263 sec   (2247 perm/sec)   p_kst 4.491373e-01   p_cons 1.372881e-04   p_joint 9.949153e-04

Joint ci ratio: 1.622708e-01	ci left: 8.928182e-04	ci right 1.052063e-03	k: 582	n:600000
Cons ci ratio: 4.276768e-01	ci left: 1.101832e-04	ci right 1.714821e-04	k: 83	n:600000
KS ci ratio: 5.603187e-03	ci left: 4.479991e-01	ci right 4.505180e-01	k: 269555	n:600000
HTR3B   600000 perm   270 sec   (2226 perm/sec)   p_kst 4.492583e-01   p_cons 1.383333e-04   p_joint 9.700000e-04

Joint ci ratio: 1.607611e-01	ci left: 8.954858e-04	ci right 1.053577e-03	k: 593	n:610000
Cons ci ratio: 4.251537e-01	ci left: 1.098403e-04	ci right 1.704853e-04	k: 84	n:610000
KS ci ratio: 5.558056e-03	ci left: 4.479217e-01	ci right 4.504198e-01	k: 273994	n:610000
HTR3B   610000 perm   276 sec   (2207 perm/sec)   p_kst 4.491705e-01   p_cons 1.377049e-04   p_joint 9.721311e-04

Joint ci ratio: 1.615813e-01	ci left: 8.717545e-04	ci right 1.026518e-03	k: 587	n:620000
Cons ci ratio: 4.251542e-01	ci left: 1.080686e-04	ci right 1.677355e-04	k: 84	n:620000
KS ci ratio: 5.511914e-03	ci left: 4.480339e-01	ci right 4.505118e-01	k: 278549	n:620000
HTR3B   620000 perm   284 sec   (2186 perm/sec)   p_kst 4.492726e-01   p_cons 1.354839e-04   p_joint 9.467742e-04

Joint ci ratio: 1.658732e-01	ci left: 8.122468e-04	ci right 9.606586e-04	k: 557	n:630000
Cons ci ratio: 4.226753e-01	ci left: 1.077712e-04	ci right 1.668288e-04	k: 85	n:630000
KS ci ratio: 5.467445e-03	ci left: 4.480934e-01	ci right 4.505515e-01	k: 283073	n:630000
HTR3B   630000 perm   291 sec   (2165 perm/sec)   p_kst 4.493222e-01   p_cons 1.349206e-04   p_joint 8.841270e-04

Joint ci ratio: 1.641175e-01	ci left: 8.175314e-04	ci right 9.651716e-04	k: 569	n:640000
Cons ci ratio: 4.202392e-01	ci left: 1.074840e-04	ci right 1.659494e-04	k: 86	n:640000
KS ci ratio: 5.423710e-03	ci left: 4.481808e-01	ci right 4.506197e-01	k: 287616	n:640000
HTR3B   640000 perm   298 sec   (2145 perm/sec)   p_kst 4.494000e-01   p_cons 1.343750e-04   p_joint 8.890625e-04

Joint ci ratio: 1.626964e-01	ci left: 8.197096e-04	ci right 9.663359e-04	k: 579	n:650000
Cons ci ratio: 4.154904e-01	ci left: 1.085838e-04	ci right 1.667950e-04	k: 88	n:650000
KS ci ratio: 5.382581e-03	ci left: 4.481210e-01	ci right 4.505410e-01	k: 292065	n:650000
HTR3B   650000 perm   306 sec   (2124 perm/sec)   p_kst 4.493308e-01   p_cons 1.353846e-04   p_joint 8.907692e-04

Joint ci ratio: 1.614486e-01	ci left: 8.203731e-04	ci right 9.658834e-04	k: 588	n:660000
Cons ci ratio: 4.108990e-01	ci left: 1.096538e-04	ci right 1.676114e-04	k: 90	n:660000
KS ci ratio: 5.340574e-03	ci left: 4.482297e-01	ci right 4.506314e-01	k: 296624	n:660000
HTR3B   660000 perm   314 sec   (2105 perm/sec)   p_kst 4.494303e-01   p_cons 1.363636e-04   p_joint 8.909091e-04

Joint ci ratio: 1.598283e-01	ci left: 8.253193e-04	ci right 9.700968e-04	k: 600	n:670000
Cons ci ratio: 4.108994e-01	ci left: 1.080172e-04	ci right 1.651098e-04	k: 90	n:670000
KS ci ratio: 5.300015e-03	ci left: 4.482905e-01	ci right 4.506742e-01	k: 301153	n:670000
HTR3B   670000 perm   321 sec   (2086 perm/sec)   p_kst 4.494821e-01   p_cons 1.343284e-04   p_joint 8.955224e-04

Joint ci ratio: 1.594316e-01	ci left: 8.174175e-04	ci right 9.604189e-04	k: 603	n:680000
Cons ci ratio: 4.064570e-01	ci left: 1.090675e-04	ci right 1.659237e-04	k: 92	n:680000
KS ci ratio: 5.260381e-03	ci left: 4.483480e-01	ci right 4.507142e-01	k: 305681	n:680000
HTR3B   680000 perm   329 sec   (2066 perm/sec)   p_kst 4.495309e-01   p_cons 1.352941e-04   p_joint 8.867647e-04

Joint ci ratio: 1.582568e-01	ci left: 8.180959e-04	ci right 9.600613e-04	k: 612	n:690000
Cons ci ratio: 4.021555e-01	ci left: 1.100906e-04	ci right 1.667108e-04	k: 94	n:690000
KS ci ratio: 5.221976e-03	ci left: 4.483707e-01	ci right 4.507196e-01	k: 310186	n:690000
HTR3B   690000 perm   337 sec   (2048 perm/sec)   p_kst 4.495449e-01   p_cons 1.362319e-04   p_joint 8.869565e-04

Joint ci ratio: 1.577436e-01	ci left: 8.118970e-04	ci right 9.522864e-04	k: 616	n:700000
Cons ci ratio: 4.000556e-01	ci left: 1.098023e-04	ci right 1.659012e-04	k: 95	n:700000
KS ci ratio: 5.184100e-03	ci left: 4.484213e-01	ci right 4.507534e-01	k: 314711	n:700000
HTR3B   700000 perm   345 sec   (2031 perm/sec)   p_kst 4.495871e-01   p_cons 1.357143e-04   p_joint 8.800000e-04

Joint ci ratio: 1.602331e-01	ci left: 7.747647e-04	ci right 9.110512e-04	k: 597	n:710000
Cons ci ratio: 3.979882e-01	ci left: 1.095229e-04	ci right 1.651136e-04	k: 96	n:710000
KS ci ratio: 5.146333e-03	ci left: 4.485382e-01	ci right 4.508538e-01	k: 319284	n:710000
HTR3B   710000 perm   353 sec   (2014 perm/sec)   p_kst 4.496958e-01   p_cons 1.352113e-04   p_joint 8.408451e-04

Joint ci ratio: 1.590407e-01	ci left: 7.760048e-04	ci right 9.113966e-04	k: 606	n:720000
Cons ci ratio: 3.959526e-01	ci left: 1.092520e-04	ci right 1.643473e-04	k: 97	n:720000
KS ci ratio: 5.110541e-03	ci left: 4.485393e-01	ci right 4.508388e-01	k: 323776	n:720000
HTR3B   720000 perm   360 sec   (1997 perm/sec)   p_kst 4.496889e-01   p_cons 1.347222e-04   p_joint 8.416667e-04

Joint ci ratio: 1.622849e-01	ci left: 7.338182e-04	ci right 8.647160e-04	k: 582	n:730000
Cons ci ratio: 3.919729e-01	ci left: 1.102237e-04	ci right 1.651057e-04	k: 99	n:730000
KS ci ratio: 5.075499e-03	ci left: 4.485392e-01	ci right 4.508229e-01	k: 328267	n:730000
HTR3B   730000 perm   369 sec   (1980 perm/sec)   p_kst 4.496808e-01   p_cons 1.356164e-04   p_joint 7.972603e-04

Joint ci ratio: 1.615937e-01	ci left: 7.303846e-04	ci right 8.600612e-04	k: 587	n:740000
Cons ci ratio: 3.919732e-01	ci left: 1.087341e-04	ci right 1.628746e-04	k: 99	n:740000
KS ci ratio: 5.039875e-03	ci left: 4.486661e-01	ci right 4.509343e-01	k: 332852	n:740000
HTR3B   740000 perm   377 sec   (1965 perm/sec)   p_kst 4.498000e-01   p_cons 1.337838e-04   p_joint 7.932432e-04

Joint ci ratio: 1.605055e-01	ci left: 7.308829e-04	ci right 8.596899e-04	k: 595	n:750000
Cons ci ratio: 3.881112e-01	ci left: 1.096895e-04	ci right 1.636298e-04	k: 101	n:750000
KS ci ratio: 5.004855e-03	ci left: 4.488030e-01	ci right 4.510561e-01	k: 337447	n:750000
HTR3B   750000 perm   385 sec   (1949 perm/sec)   p_kst 4.499293e-01   p_cons 1.346667e-04   p_joint 7.933333e-04

Joint ci ratio: 1.614581e-01	ci left: 7.124260e-04	ci right 8.387976e-04	k: 588	n:760000
Cons ci ratio: 3.881115e-01	ci left: 1.082462e-04	ci right 1.614768e-04	k: 101	n:760000
KS ci ratio: 4.971943e-03	ci left: 4.487982e-01	ci right 4.510364e-01	k: 341937	n:760000
HTR3B   760000 perm   393 sec   (1933 perm/sec)   p_kst 4.499171e-01   p_cons 1.328947e-04   p_joint 7.736842e-04

Joint ci ratio: 1.598376e-01	ci left: 7.181318e-04	ci right 8.441143e-04	k: 600	n:770000
Cons ci ratio: 3.862230e-01	ci left: 1.080127e-04	ci right 1.608043e-04	k: 102	n:770000
KS ci ratio: 4.939697e-03	ci left: 4.487910e-01	ci right 4.510146e-01	k: 346425	n:770000
HTR3B   770000 perm   402 sec   (1917 perm/sec)   p_kst 4.499026e-01   p_cons 1.324675e-04   p_joint 7.792208e-04

Joint ci ratio: 1.590459e-01	ci left: 7.163103e-04	ci right 8.412914e-04	k: 606	n:780000
Cons ci ratio: 3.825268e-01	ci left: 1.089443e-04	ci right 1.615534e-04	k: 104	n:780000
KS ci ratio: 4.907219e-03	ci left: 4.488699e-01	ci right 4.510792e-01	k: 350980	n:780000
HTR3B   780000 perm   410 sec   (1900 perm/sec)   p_kst 4.499744e-01   p_cons 1.333333e-04   p_joint 7.769231e-04

Joint ci ratio: 1.650027e-01	ci left: 6.550172e-04	ci right 7.740096e-04	k: 563	n:790000
Cons ci ratio: 3.900294e-01	ci left: 1.029935e-04	ci right 1.539559e-04	k: 100	n:790000
KS ci ratio: 4.875510e-03	ci left: 4.489329e-01	ci right 4.511282e-01	k: 355524	n:790000
HTR3B   790000 perm   419 sec   (1885 perm/sec)   p_kst 4.500304e-01   p_cons 1.265823e-04   p_joint 7.126582e-04

Joint ci ratio: 1.632744e-01	ci left: 6.612135e-04	ci right 7.799499e-04	k: 575	n:800000
Cons ci ratio: 3.862240e-01	ci left: 1.039622e-04	ci right 1.547742e-04	k: 102	n:800000
KS ci ratio: 4.845325e-03	ci left: 4.489006e-01	ci right 4.510822e-01	k: 359993	n:800000
HTR3B   800000 perm   428 sec   (1869 perm/sec)   p_kst 4.499913e-01   p_cons 1.275000e-04   p_joint 7.187500e-04

Joint ci ratio: 1.631335e-01	ci left: 6.542343e-04	ci right 7.716061e-04	k: 576	n:810000
Cons ci ratio: 3.843627e-01	ci left: 1.037937e-04	ci right 1.542170e-04	k: 103	n:810000
KS ci ratio: 4.814865e-03	ci left: 4.489544e-01	ci right 4.511225e-01	k: 364531	n:810000
HTR3B   810000 perm   437 sec   (1854 perm/sec)   p_kst 4.500383e-01   p_cons 1.271605e-04   p_joint 7.111111e-04

Joint ci ratio: 1.678584e-01	ci left: 6.088462e-04	ci right 7.215589e-04	k: 544	n:820000
Cons ci ratio: 3.825281e-01	ci left: 1.036298e-04	ci right 1.536728e-04	k: 104	n:820000
KS ci ratio: 4.785963e-03	ci left: 4.489045e-01	ci right 4.510593e-01	k: 368985	n:820000
HTR3B   820000 perm   446 sec   (1840 perm/sec)   p_kst 4.499817e-01   p_cons 1.268293e-04   p_joint 6.634146e-04

Joint ci ratio: 1.667907e-01	ci left: 6.095913e-04	ci right 7.216520e-04	k: 551	n:830000
Cons ci ratio: 3.807195e-01	ci left: 1.034705e-04	ci right 1.531412e-04	k: 105	n:830000
KS ci ratio: 4.757645e-03	ci left: 4.488486e-01	ci right 4.509903e-01	k: 373433	n:830000
HTR3B   830000 perm   454 sec   (1826 perm/sec)   p_kst 4.499193e-01   p_cons 1.265060e-04   p_joint 6.638554e-04

Joint ci ratio: 1.652998e-01	ci left: 6.137444e-04	ci right 7.254597e-04	k: 561	n:840000
Cons ci ratio: 3.737326e-01	ci left: 1.065492e-04	ci right 1.565294e-04	k: 109	n:840000
KS ci ratio: 4.729334e-03	ci left: 4.488452e-01	ci right 4.509742e-01	k: 377924	n:840000
HTR3B   840000 perm   464 sec   (1811 perm/sec)   p_kst 4.499095e-01   p_cons 1.297619e-04   p_joint 6.678571e-04

Joint ci ratio: 1.657437e-01	ci left: 6.031404e-04	ci right 7.132498e-04	k: 558	n:850000
Cons ci ratio: 3.737329e-01	ci left: 1.052957e-04	ci right 1.546879e-04	k: 109	n:850000
KS ci ratio: 4.701635e-03	ci left: 4.488302e-01	ci right 4.509466e-01	k: 382405	n:850000
HTR3B   850000 perm   473 sec   (1797 perm/sec)   p_kst 4.498882e-01   p_cons 1.282353e-04   p_joint 6.564706e-04

Joint ci ratio: 1.647156e-01	ci left: 6.039302e-04	ci right 7.134320e-04	k: 565	n:860000
Cons ci ratio: 3.720457e-01	ci left: 1.051251e-04	ci right 1.541605e-04	k: 110	n:860000
KS ci ratio: 4.674921e-03	ci left: 4.487621e-01	ci right 4.508661e-01	k: 386840	n:860000
HTR3B   860000 perm   482 sec   (1783 perm/sec)   p_kst 4.498140e-01   p_cons 1.279070e-04   p_joint 6.569767e-04

Joint ci ratio: 1.635636e-01	ci left: 6.058062e-04	ci right 7.148043e-04	k: 573	n:870000
Cons ci ratio: 3.687384e-01	ci left: 1.060017e-04	ci right 1.549004e-04	k: 112	n:870000
KS ci ratio: 4.648399e-03	ci left: 4.487232e-01	ci right 4.508150e-01	k: 391299	n:870000
HTR3B   870000 perm   492 sec   (1769 perm/sec)   p_kst 4.497690e-01   p_cons 1.287356e-04   p_joint 6.586207e-04

Joint ci ratio: 1.638501e-01	ci left: 5.967422e-04	ci right 7.043161e-04	k: 571	n:880000
Cons ci ratio: 3.687387e-01	ci left: 1.047971e-04	ci right 1.531402e-04	k: 112	n:880000
KS ci ratio: 4.621739e-03	ci left: 4.487477e-01	ci right 4.508276e-01	k: 395813	n:880000
HTR3B   880000 perm   501 sec   (1756 perm/sec)   p_kst 4.497875e-01   p_cons 1.272727e-04   p_joint 6.488636e-04

Joint ci ratio: 1.529938e-01	ci left: 6.806841e-04	ci right 7.945159e-04	k: 655	n:890000
Cons ci ratio: 3.491964e-01	ci left: 1.169102e-04	ci right 1.673369e-04	k: 125	n:890000
KS ci ratio: 4.595856e-03	ci left: 4.487369e-01	ci right 4.508050e-01	k: 400296	n:890000
HTR3B   890000 perm   511 sec   (1743 perm/sec)   p_kst 4.497708e-01   p_cons 1.404494e-04   p_joint 7.359551e-04

Joint ci ratio: 1.532283e-01	ci left: 6.709836e-04	ci right 7.833810e-04	k: 653	n:900000
Cons ci ratio: 3.478190e-01	ci left: 1.166250e-04	ci right 1.666856e-04	k: 126	n:900000
KS ci ratio: 4.570167e-03	ci left: 4.487518e-01	ci right 4.508085e-01	k: 404802	n:900000
HTR3B   900000 perm   520 sec   (1730 perm/sec)   p_kst 4.497800e-01   p_cons 1.400000e-04   p_joint 7.255556e-04

Joint ci ratio: 1.525304e-01	ci left: 6.699513e-04	ci right 7.816179e-04	k: 659	n:910000
Cons ci ratio: 3.464578e-01	ci left: 1.163465e-04	ci right 1.660482e-04	k: 127	n:910000
KS ci ratio: 4.545217e-03	ci left: 4.487325e-01	ci right 4.507778e-01	k: 409277	n:910000
HTR3B   910000 perm   530 sec   (1717 perm/sec)   p_kst 4.497549e-01   p_cons 1.395604e-04   p_joint 7.241758e-04

Joint ci ratio: 1.518418e-01	ci left: 6.689426e-04	ci right 7.798920e-04	k: 665	n:920000
Cons ci ratio: 3.464580e-01	ci left: 1.150819e-04	ci right 1.642434e-04	k: 127	n:920000
KS ci ratio: 4.520294e-03	ci left: 4.487548e-01	ci right 4.507890e-01	k: 413790	n:920000
HTR3B   920000 perm   540 sec   (1704 perm/sec)   p_kst 4.497717e-01   p_cons 1.380435e-04   p_joint 7.228261e-04

Joint ci ratio: 1.511626e-01	ci left: 6.679567e-04	ci right 7.782021e-04	k: 671	n:930000
Cons ci ratio: 3.464583e-01	ci left: 1.138444e-04	ci right 1.624774e-04	k: 127	n:930000
KS ci ratio: 4.495503e-03	ci left: 4.488068e-01	ci right 4.508300e-01	k: 418331	n:930000
HTR3B   930000 perm   550 sec   (1691 perm/sec)   p_kst 4.498183e-01   p_cons 1.365591e-04   p_joint 7.215054e-04

Joint ci ratio: 1.232797e-01	ci left: 1.008218e-03	ci right 1.141695e-03	k: 1009	n:940000
Cons ci ratio: 3.424679e-01	ci left: 1.155488e-04	ci right 1.642154e-04	k: 130	n:940000
KS ci ratio: 4.471885e-03	ci left: 4.487727e-01	ci right 4.507851e-01	k: 422792	n:940000
HTR3B   940000 perm   560 sec   (1679 perm/sec)   p_kst 4.497787e-01   p_cons 1.382979e-04   p_joint 1.073404e-03

Joint ci ratio: 1.232804e-01	ci left: 9.976051e-04	ci right 1.129678e-03	k: 1009	n:950000
Cons ci ratio: 3.361130e-01	ci left: 1.191473e-04	ci right 1.681966e-04	k: 135	n:950000
KS ci ratio: 4.448521e-03	ci left: 4.487519e-01	ci right 4.507537e-01	k: 427265	n:950000
HTR3B   950000 perm   570 sec   (1667 perm/sec)   p_kst 4.497526e-01   p_cons 1.421053e-04   p_joint 1.062105e-03

Joint ci ratio: 1.228557e-01	ci left: 9.942804e-04	ci right 1.125427e-03	k: 1016	n:960000
Cons ci ratio: 3.348841e-01	ci left: 1.188601e-04	ci right 1.675736e-04	k: 136	n:960000
KS ci ratio: 4.425007e-03	ci left: 4.487889e-01	ci right 4.507802e-01	k: 431793	n:960000
HTR3B   960000 perm   580 sec   (1655 perm/sec)   p_kst 4.497844e-01   p_cons 1.416667e-04   p_joint 1.058333e-03

Joint ci ratio: 1.224353e-01	ci left: 9.910251e-04	ci right 1.121262e-03	k: 1023	n:970000
Cons ci ratio: 3.336687e-01	ci left: 1.185792e-04	ci right 1.669632e-04	k: 137	n:970000
KS ci ratio: 4.402963e-03	ci left: 4.487014e-01	ci right 4.506824e-01	k: 436201	n:970000
HTR3B   970000 perm   590 sec   (1643 perm/sec)   p_kst 4.496918e-01   p_cons 1.412371e-04   p_joint 1.054639e-03

Joint ci ratio: 9.869526e-02	ci left: 1.527807e-03	ci right 1.687407e-03	k: 1574	n:980000
Cons ci ratio: 3.324663e-01	ci left: 1.183042e-04	ci right 1.663649e-04	k: 138	n:980000
KS ci ratio: 4.379573e-03	ci left: 4.488045e-01	ci right 4.507754e-01	k: 440794	n:980000
HTR3B   980000 perm   601 sec   (1631 perm/sec)   p_kst 4.497898e-01   p_cons 1.408163e-04   p_joint 1.606122e-03

Joint ci ratio: 9.816685e-02	ci left: 1.529123e-03	ci right 1.687957e-03	k: 1591	n:990000
Cons ci ratio: 3.312769e-01	ci left: 1.180352e-04	ci right 1.657785e-04	k: 139	n:990000
KS ci ratio: 4.356819e-03	ci left: 4.488752e-01	ci right 4.508362e-01	k: 445357	n:990000
HTR3B   990000 perm   611 sec   (1620 perm/sec)   p_kst 4.498556e-01   p_cons 1.404040e-04   p_joint 1.607071e-03

Joint ci ratio: 9.789088e-02	ci left: 1.522611e-03	ci right 1.680298e-03	k: 1600	n:1000000
Cons ci ratio: 3.312771e-01	ci left: 1.168548e-04	ci right 1.641207e-04	k: 139	n:1000000
KS ci ratio: 4.334810e-03	ci left: 4.488996e-01	ci right 4.508507e-01	k: 449875	n:1000000
HTR3B   1000000 perm   621 sec   (1610 perm/sec)   p_kst 4.498750e-01   p_cons 1.390000e-04   p_joint 1.600000e-03

Joint ci ratio: 9.755656e-02	ci left: 1.518160e-03	ci right 1.674819e-03	k: 1611	n:1010000
Cons ci ratio: 3.301003e-01	ci left: 1.166058e-04	ci right 1.635678e-04	k: 140	n:1010000
KS ci ratio: 4.313787e-03	ci left: 4.488483e-01	ci right 4.507896e-01	k: 454317	n:1010000
HTR3B   1010000 perm   632 sec   (1599 perm/sec)   p_kst 4.498188e-01   p_cons 1.386139e-04   p_joint 1.595050e-03

Joint ci ratio: 1.002071e-01	ci left: 1.422956e-03	ci right 1.574015e-03	k: 1527	n:1020000
Cons ci ratio: 3.289360e-01	ci left: 1.163619e-04	ci right 1.630254e-04	k: 141	n:1020000
KS ci ratio: 4.292574e-03	ci left: 4.488548e-01	ci right 4.507866e-01	k: 458817	n:1020000
HTR3B   1020000 perm   642 sec   (1588 perm/sec)   p_kst 4.498206e-01   p_cons 1.382353e-04   p_joint 1.497059e-03

Joint ci ratio: 9.968652e-02	ci left: 1.424287e-03	ci right 1.574655e-03	k: 1543	n:1030000
Cons ci ratio: 3.277840e-01	ci left: 1.161230e-04	ci right 1.624932e-04	k: 142	n:1030000
KS ci ratio: 4.271779e-03	ci left: 4.488486e-01	ci right 4.507711e-01	k: 463304	n:1030000
HTR3B   1030000 perm   653 sec   (1577 perm/sec)   p_kst 4.498097e-01   p_cons 1.378641e-04   p_joint 1.498058e-03

Joint ci ratio: 9.965493e-02	ci left: 1.411529e-03	ci right 1.560500e-03	k: 1544	n:1040000
Cons ci ratio: 3.277842e-01	ci left: 1.150064e-04	ci right 1.609308e-04	k: 142	n:1040000
KS ci ratio: 4.250549e-03	ci left: 4.489282e-01	ci right 4.508413e-01	k: 467880	n:1040000
HTR3B   1040000 perm   664 sec   (1567 perm/sec)   p_kst 4.498846e-01   p_cons 1.365385e-04   p_joint 1.484615e-03

Joint ci ratio: 1.000455e-01	ci left: 1.386942e-03	ci right 1.533926e-03	k: 1532	n:1050000
Cons ci ratio: 3.277844e-01	ci left: 1.139111e-04	ci right 1.593981e-04	k: 142	n:1050000
KS ci ratio: 4.230438e-03	ci left: 4.489119e-01	ci right 4.508160e-01	k: 472357	n:1050000
HTR3B   1050000 perm   675 sec   (1556 perm/sec)   p_kst 4.498638e-01   p_cons 1.352381e-04   p_joint 1.459048e-03

Joint ci ratio: 1.012776e-01	ci left: 1.339829e-03	ci right 1.483672e-03	k: 1495	n:1060000
Cons ci ratio: 3.266443e-01	ci left: 1.137024e-04	ci right 1.589150e-04	k: 143	n:1060000
KS ci ratio: 4.210392e-03	ci left: 4.489215e-01	ci right 4.508165e-01	k: 476861	n:1060000
HTR3B   1060000 perm   686 sec   (1546 perm/sec)   p_kst 4.498689e-01   p_cons 1.349057e-04   p_joint 1.410377e-03

Joint ci ratio: 1.007069e-01	ci left: 1.342794e-03	ci right 1.486095e-03	k: 1512	n:1070000
Cons ci ratio: 3.232938e-01	ci left: 1.152148e-04	ci right 1.604615e-04	k: 146	n:1070000
KS ci ratio: 4.190543e-03	ci left: 4.489412e-01	ci right 4.508273e-01	k: 481376	n:1070000
HTR3B   1070000 perm   697 sec   (1536 perm/sec)   p_kst 4.498841e-01   p_cons 1.364486e-04   p_joint 1.413084e-03

Joint ci ratio: 1.025568e-01	ci left: 1.281629e-03	ci right 1.421067e-03	k: 1458	n:1080000
Cons ci ratio: 3.221998e-01	ci left: 1.149989e-04	ci right 1.599764e-04	k: 147	n:1080000
KS ci ratio: 4.171665e-03	ci left: 4.488781e-01	ci right 4.507555e-01	k: 485802	n:1080000
HTR3B   1080000 perm   708 sec   (1526 perm/sec)   p_kst 4.498167e-01   p_cons 1.361111e-04   p_joint 1.350000e-03

Joint ci ratio: 1.024872e-01	ci left: 1.271659e-03	ci right 1.409912e-03	k: 1460	n:1090000
Cons ci ratio: 3.200445e-01	ci left: 1.156308e-04	ci right 1.604910e-04	k: 149	n:1090000
KS ci ratio: 4.153133e-03	ci left: 4.488052e-01	ci right 4.506739e-01	k: 490216	n:1090000
HTR3B   1090000 perm   719 sec   (1515 perm/sec)   p_kst 4.497394e-01   p_cons 1.366972e-04   p_joint 1.339450e-03

Joint ci ratio: 1.022428e-01	ci left: 1.266299e-03	ci right 1.403621e-03	k: 1467	n:1100000
Cons ci ratio: 3.200447e-01	ci left: 1.145796e-04	ci right 1.590320e-04	k: 149	n:1100000
KS ci ratio: 4.134375e-03	ci left: 4.487900e-01	ci right 4.506502e-01	k: 494692	n:1100000
HTR3B   1100000 perm   731 sec   (1505 perm/sec)   p_kst 4.497200e-01   p_cons 1.354545e-04   p_joint 1.333636e-03

Joint ci ratio: 1.018620e-01	ci left: 1.264547e-03	ci right 1.401139e-03	k: 1478	n:1110000
Cons ci ratio: 3.189832e-01	ci left: 1.143761e-04	ci right 1.585722e-04	k: 150	n:1110000
KS ci ratio: 4.116812e-03	ci left: 4.486617e-01	ci right 4.505134e-01	k: 499042	n:1110000
HTR3B   1110000 perm   742 sec   (1496 perm/sec)   p_kst 4.495874e-01   p_cons 1.351351e-04   p_joint 1.331532e-03

Joint ci ratio: 1.016221e-01	ci left: 1.259348e-03	ci right 1.395038e-03	k: 1485	n:1120000
Cons ci ratio: 3.179323e-01	ci left: 1.141763e-04	ci right 1.581203e-04	k: 151	n:1120000
KS ci ratio: 4.098547e-03	ci left: 4.486472e-01	ci right 4.504906e-01	k: 503517	n:1120000
HTR3B   1120000 perm   753 sec   (1487 perm/sec)   p_kst 4.495688e-01   p_cons 1.348214e-04   p_joint 1.325893e-03

Joint ci ratio: 1.009112e-01	ci left: 1.266317e-03	ci right 1.401747e-03	k: 1506	n:1130000
Cons ci ratio: 3.148402e-01	ci left: 1.156100e-04	ci right 1.595860e-04	k: 154	n:1130000
KS ci ratio: 4.080172e-03	ci left: 4.486754e-01	ci right 4.505107e-01	k: 508040	n:1130000
HTR3B   1130000 perm   765 sec   (1477 perm/sec)   p_kst 4.495929e-01   p_cons 1.362832e-04   p_joint 1.332743e-03

Joint ci ratio: 1.033436e-01	ci left: 1.195371e-03	ci right 1.326482e-03	k: 1436	n:1140000
Cons ci ratio: 3.118367e-01	ci left: 1.170206e-04	ci right 1.610239e-04	k: 157	n:1140000
KS ci ratio: 4.062553e-03	ci left: 4.486409e-01	ci right 4.504681e-01	k: 512492	n:1140000
HTR3B   1140000 perm   777 sec   (1468 perm/sec)   p_kst 4.495544e-01   p_cons 1.377193e-04   p_joint 1.259649e-03

Joint ci ratio: 1.042931e-01	ci left: 1.162954e-03	ci right 1.291753e-03	k: 1410	n:1150000
Cons ci ratio: 3.098815e-01	ci left: 1.176065e-04	ci right 1.614981e-04	k: 159	n:1150000
KS ci ratio: 4.044074e-03	ci left: 4.487401e-01	ci right 4.505593e-01	k: 517097	n:1150000
HTR3B   1150000 perm   788 sec   (1459 perm/sec)   p_kst 4.496496e-01   p_cons 1.382609e-04   p_joint 1.226087e-03

Joint ci ratio: 1.036703e-01	ci left: 1.167202e-03	ci right 1.295654e-03	k: 1427	n:1160000
Cons ci ratio: 3.070164e-01	ci left: 1.189787e-04	ci right 1.628916e-04	k: 162	n:1160000
KS ci ratio: 4.026910e-03	ci left: 4.487065e-01	ci right 4.505179e-01	k: 521550	n:1160000
HTR3B   1160000 perm   800 sec   (1450 perm/sec)   p_kst 4.496121e-01   p_cons 1.396552e-04   p_joint 1.230172e-03

Joint ci ratio: 1.044426e-01	ci left: 1.139744e-03	ci right 1.266165e-03	k: 1406	n:1170000
Cons ci ratio: 3.070166e-01	ci left: 1.179618e-04	ci right 1.614994e-04	k: 162	n:1170000
KS ci ratio: 4.009928e-03	ci left: 4.486778e-01	ci right 4.504814e-01	k: 526008	n:1170000
HTR3B   1170000 perm   812 sec   (1441 perm/sec)   p_kst 4.495795e-01   p_cons 1.384615e-04   p_joint 1.201709e-03

Joint ci ratio: 1.058457e-01	ci left: 1.099552e-03	ci right 1.223256e-03	k: 1369	n:1180000
Cons ci ratio: 3.070168e-01	ci left: 1.169621e-04	ci right 1.601307e-04	k: 162	n:1180000
KS ci ratio: 3.992797e-03	ci left: 4.486945e-01	ci right 4.504905e-01	k: 530519	n:1180000
HTR3B   1180000 perm   824 sec   (1432 perm/sec)   p_kst 4.495924e-01   p_cons 1.372881e-04   p_joint 1.160169e-03

Joint ci ratio: 1.053470e-01	ci left: 1.100948e-03	ci right 1.224189e-03	k: 1382	n:1190000
Cons ci ratio: 3.070169e-01	ci left: 1.159792e-04	ci right 1.587851e-04	k: 162	n:1190000
KS ci ratio: 3.975883e-03	ci left: 4.487110e-01	ci right 4.504994e-01	k: 535030	n:1190000
HTR3B   1190000 perm   836 sec   (1424 perm/sec)   p_kst 4.496050e-01   p_cons 1.361345e-04   p_joint 1.161345e-03

Joint ci ratio: 1.047427e-01	ci left: 1.104757e-03	ci right 1.227671e-03	k: 1398	n:1200000
Cons ci ratio: 3.051505e-01	ci left: 1.165514e-04	ci right 1.592562e-04	k: 164	n:1200000
KS ci ratio: 3.959023e-03	ci left: 4.487472e-01	ci right 4.505281e-01	k: 539565	n:1200000
HTR3B   1200000 perm   848 sec   (1415 perm/sec)   p_kst 4.496375e-01   p_cons 1.366667e-04   p_joint 1.165000e-03

Joint ci ratio: 8.784573e-02	ci left: 1.570786e-03	ci right 1.715914e-03	k: 1987	n:1210000
Cons ci ratio: 3.024134e-01	ci left: 1.178786e-04	ci right 1.606077e-04	k: 167	n:1210000
KS ci ratio: 3.942592e-03	ci left: 4.487555e-01	ci right 4.505290e-01	k: 544067	n:1210000
HTR3B   1210000 perm   861 sec   (1405 perm/sec)   p_kst 4.496421e-01   p_cons 1.380165e-04   p_joint 1.642149e-03

Joint ci ratio: 8.742883e-02	ci left: 1.573143e-03	ci right 1.717764e-03	k: 2006	n:1220000
Cons ci ratio: 3.006292e-01	ci left: 1.184277e-04	ci right 1.610542e-04	k: 169	n:1220000
KS ci ratio: 3.926442e-03	ci left: 4.487539e-01	ci right 4.505201e-01	k: 548557	n:1220000
HTR3B   1220000 perm   874 sec   (1397 perm/sec)   p_kst 4.496369e-01   p_cons 1.385246e-04   p_joint 1.644262e-03

Joint ci ratio: 8.721206e-02	ci left: 1.568306e-03	ci right 1.712106e-03	k: 2016	n:1230000
Cons ci ratio: 2.997489e-01	ci left: 1.182167e-04	ci right 1.606189e-04	k: 170	n:1230000
KS ci ratio: 3.910766e-03	ci left: 4.487173e-01	ci right 4.504764e-01	k: 553004	n:1230000
HTR3B   1230000 perm   886 sec   (1388 perm/sec)   p_kst 4.495967e-01   p_cons 1.382114e-04   p_joint 1.639024e-03

Joint ci ratio: 8.674010e-02	ci left: 1.573014e-03	ci right 1.716426e-03	k: 2038	n:1240000
Cons ci ratio: 2.980112e-01	ci left: 1.187553e-04	ci right 1.610571e-04	k: 172	n:1240000
KS ci ratio: 3.894990e-03	ci left: 4.487177e-01	ci right 4.504696e-01	k: 557496	n:1240000
HTR3B   1240000 perm   899 sec   (1379 perm/sec)   p_kst 4.495935e-01   p_cons 1.387097e-04   p_joint 1.643548e-03

Joint ci ratio: 8.650726e-02	ci left: 1.569040e-03	ci right 1.711685e-03	k: 2049	n:1250000
Cons ci ratio: 2.954602e-01	ci left: 1.200266e-04	ci right 1.623467e-04	k: 175	n:1250000
KS ci ratio: 3.879197e-03	ci left: 4.487445e-01	ci right 4.504894e-01	k: 562021	n:1250000
HTR3B   1250000 perm   912 sec   (1371 perm/sec)   p_kst 4.496168e-01   p_cons 1.400000e-04   p_joint 1.639200e-03

Joint ci ratio: 8.778228e-02	ci left: 1.510780e-03	ci right 1.650257e-03	k: 1990	n:1260000
Cons ci ratio: 2.946244e-01	ci left: 1.198090e-04	ci right 1.619105e-04	k: 176	n:1260000
KS ci ratio: 3.864182e-03	ci left: 4.486954e-01	ci right 4.504334e-01	k: 566451	n:1260000
HTR3B   1260000 perm   924 sec   (1364 perm/sec)   p_kst 4.495643e-01   p_cons 1.396825e-04   p_joint 1.579365e-03

Joint ci ratio: 8.747534e-02	ci left: 1.509666e-03	ci right 1.648528e-03	k: 2004	n:1270000
Cons ci ratio: 2.937957e-01	ci left: 1.195949e-04	ci right 1.614810e-04	k: 177	n:1270000
KS ci ratio: 3.848851e-03	ci left: 4.487102e-01	ci right 4.504413e-01	k: 570961	n:1270000
HTR3B   1270000 perm   937 sec   (1356 perm/sec)   p_kst 4.495756e-01   p_cons 1.393701e-04   p_joint 1.577953e-03

Joint ci ratio: 8.712838e-02	ci left: 1.510099e-03	ci right 1.648422e-03	k: 2020	n:1280000
Cons ci ratio: 2.929740e-01	ci left: 1.193843e-04	ci right 1.610580e-04	k: 178	n:1280000
KS ci ratio: 3.833931e-03	ci left: 4.486950e-01	ci right 4.504193e-01	k: 575433	n:1280000
HTR3B   1280000 perm   949 sec   (1348 perm/sec)   p_kst 4.495570e-01   p_cons 1.390625e-04   p_joint 1.578125e-03

Joint ci ratio: 8.661532e-02	ci left: 1.516593e-03	ci right 1.654652e-03	k: 2044	n:1290000
Cons ci ratio: 2.921591e-01	ci left: 1.191772e-04	ci right 1.606414e-04	k: 179	n:1290000
KS ci ratio: 3.819482e-03	ci left: 4.486413e-01	ci right 4.503589e-01	k: 579855	n:1290000
HTR3B   1290000 perm   962 sec   (1340 perm/sec)   p_kst 4.495000e-01   p_cons 1.387597e-04   p_joint 1.584496e-03

Joint ci ratio: 8.627846e-02	ci left: 1.516969e-03	ci right 1.654498e-03	k: 2060	n:1300000
Cons ci ratio: 2.897542e-01	ci left: 1.203997e-04	ci right 1.618813e-04	k: 182	n:1300000
KS ci ratio: 3.804923e-03	ci left: 4.486239e-01	ci right 4.503348e-01	k: 584323	n:1300000
HTR3B   1300000 perm   975 sec   (1333 perm/sec)   p_kst 4.494792e-01   p_cons 1.400000e-04   p_joint 1.584615e-03

Joint ci ratio: 8.884138e-02	ci left: 1.418028e-03	ci right 1.550604e-03	k: 1943	n:1310000
Cons ci ratio: 2.874078e-01	ci left: 1.216050e-04	ci right 1.631009e-04	k: 185	n:1310000
KS ci ratio: 3.790406e-03	ci left: 4.486227e-01	ci right 4.503271e-01	k: 588812	n:1310000
HTR3B   1310000 perm   989 sec   (1325 perm/sec)   p_kst 4.494748e-01   p_cons 1.412214e-04   p_joint 1.483206e-03

Joint ci ratio: 8.847798e-02	ci left: 1.419138e-03	ci right 1.551247e-03	k: 1959	n:1320000
Cons ci ratio: 2.874080e-01	ci left: 1.206837e-04	ci right 1.618653e-04	k: 185	n:1320000
KS ci ratio: 3.776037e-03	ci left: 4.486239e-01	ci right 4.503218e-01	k: 593304	n:1320000
HTR3B   1320000 perm   1002 sec   (1317 perm/sec)   p_kst 4.494727e-01   p_cons 1.401515e-04   p_joint 1.484091e-03

Joint ci ratio: 8.809668e-02	ci left: 1.420967e-03	ci right 1.552647e-03	k: 1976	n:1330000
Cons ci ratio: 2.874081e-01	ci left: 1.197763e-04	ci right 1.606483e-04	k: 185	n:1330000
KS ci ratio: 3.761219e-03	ci left: 4.487054e-01	ci right 4.503970e-01	k: 597903	n:1330000
HTR3B   1330000 perm   1015 sec   (1310 perm/sec)   p_kst 4.495511e-01   p_cons 1.390977e-04   p_joint 1.485714e-03

Joint ci ratio: 8.791920e-02	ci left: 1.416202e-03	ci right 1.547162e-03	k: 1984	n:1340000
Cons ci ratio: 2.866387e-01	ci left: 1.195750e-04	ci right 1.602493e-04	k: 186	n:1340000
KS ci ratio: 3.747370e-03	ci left: 4.486806e-01	ci right 4.503659e-01	k: 602361	n:1340000
HTR3B   1340000 perm   1029 sec   (1303 perm/sec)   p_kst 4.495231e-01   p_cons 1.388060e-04   p_joint 1.480597e-03

Joint ci ratio: 8.758888e-02	ci left: 1.416579e-03	ci right 1.547056e-03	k: 1999	n:1350000
Cons ci ratio: 2.836211e-01	ci left: 1.214404e-04	ci right 1.622365e-04	k: 190	n:1350000
KS ci ratio: 3.732858e-03	ci left: 4.487643e-01	ci right 4.504433e-01	k: 606965	n:1350000
HTR3B   1350000 perm   1042 sec   (1296 perm/sec)   p_kst 4.496037e-01   p_cons 1.407407e-04   p_joint 1.480741e-03

Joint ci ratio: 9.335227e-02	ci left: 1.234394e-03	ci right 1.355981e-03	k: 1760	n:1360000
Cons ci ratio: 2.821476e-01	ci left: 1.219137e-04	ci right 1.626182e-04	k: 192	n:1360000
KS ci ratio: 3.719092e-03	ci left: 4.487696e-01	ci right 4.504424e-01	k: 611464	n:1360000
HTR3B   1360000 perm   1055 sec   (1289 perm/sec)   p_kst 4.496059e-01   p_cons 1.411765e-04   p_joint 1.294118e-03

Joint ci ratio: 9.314111e-02	ci left: 1.231087e-03	ci right 1.352059e-03	k: 1768	n:1370000
Cons ci ratio: 2.814196e-01	ci left: 1.217022e-04	ci right 1.622126e-04	k: 193	n:1370000
KS ci ratio: 3.705587e-03	ci left: 4.487602e-01	ci right 4.504269e-01	k: 615943	n:1370000
HTR3B   1370000 perm   1068 sec   (1282 perm/sec)   p_kst 4.495934e-01   p_cons 1.408759e-04   p_joint 1.290511e-03

Joint ci ratio: 9.280075e-02	ci left: 1.231367e-03	ci right 1.351901e-03	k: 1781	n:1380000
Cons ci ratio: 2.799800e-01	ci left: 1.221676e-04	ci right 1.625881e-04	k: 195	n:1380000
KS ci ratio: 3.692202e-03	ci left: 4.487546e-01	ci right 4.504152e-01	k: 620427	n:1380000
HTR3B   1380000 perm   1082 sec   (1276 perm/sec)   p_kst 4.495848e-01   p_cons 1.413043e-04   p_joint 1.290580e-03

Joint ci ratio: 9.261921e-02	ci left: 1.227428e-03	ci right 1.347328e-03	k: 1788	n:1390000
Cons ci ratio: 2.792685e-01	ci left: 1.219576e-04	ci right 1.621882e-04	k: 196	n:1390000
KS ci ratio: 3.679147e-03	ci left: 4.487239e-01	ci right 4.503785e-01	k: 624876	n:1390000
HTR3B   1390000 perm   1095 sec   (1269 perm/sec)   p_kst 4.495511e-01   p_cons 1.410072e-04   p_joint 1.286331e-03

Joint ci ratio: 9.254198e-02	ci left: 1.220753e-03	ci right 1.339897e-03	k: 1791	n:1400000
Cons ci ratio: 2.792687e-01	ci left: 1.210865e-04	ci right 1.610297e-04	k: 196	n:1400000
KS ci ratio: 3.666267e-03	ci left: 4.486886e-01	ci right 4.503373e-01	k: 629318	n:1400000
HTR3B   1400000 perm   1109 sec   (1262 perm/sec)   p_kst 4.495129e-01   p_cons 1.400000e-04   p_joint 1.279286e-03

Joint ci ratio: 9.231059e-02	ci left: 1.218331e-03	ci right 1.336924e-03	k: 1800	n:1410000
Cons ci ratio: 2.792688e-01	ci left: 1.202277e-04	ci right 1.598877e-04	k: 196	n:1410000
KS ci ratio: 3.652887e-03	ci left: 4.487397e-01	ci right 4.503825e-01	k: 633881	n:1410000
HTR3B   1410000 perm   1123 sec   (1256 perm/sec)   p_kst 4.495610e-01   p_cons 1.390071e-04   p_joint 1.276596e-03

Joint ci ratio: 9.269833e-02	ci left: 1.199431e-03	ci right 1.316702e-03	k: 1785	n:1420000
Cons ci ratio: 2.778619e-01	ci left: 1.206911e-04	ci right 1.602683e-04	k: 198	n:1420000
KS ci ratio: 3.639596e-03	ci left: 4.487978e-01	ci right 4.504348e-01	k: 638455	n:1420000
HTR3B   1420000 perm   1137 sec   (1249 perm/sec)   p_kst 4.496162e-01   p_cons 1.394366e-04   p_joint 1.257042e-03

Joint ci ratio: 9.226014e-02	ci left: 1.202657e-03	ci right 1.319658e-03	k: 1802	n:1430000
Cons ci ratio: 2.751104e-01	ci left: 1.224505e-04	ci right 1.621381e-04	k: 202	n:1430000
KS ci ratio: 3.627080e-03	ci left: 4.487690e-01	ci right 4.504004e-01	k: 642906	n:1430000
HTR3B   1430000 perm   1151 sec   (1242 perm/sec)   p_kst 4.495846e-01   p_cons 1.412587e-04   p_joint 1.260140e-03

Joint ci ratio: 9.277719e-02	ci left: 1.180737e-03	ci right 1.296284e-03	k: 1782	n:1440000
Cons ci ratio: 2.717834e-01	ci left: 1.248343e-04	ci right 1.647218e-04	k: 207	n:1440000
KS ci ratio: 3.614580e-03	ci left: 4.487560e-01	ci right 4.503817e-01	k: 647379	n:1440000
HTR3B   1440000 perm   1165 sec   (1236 perm/sec)   p_kst 4.495688e-01   p_cons 1.437500e-04   p_joint 1.237500e-03

Joint ci ratio: 1.043805e-01	ci left: 9.209933e-04	ci right 1.023086e-03	k: 1408	n:1450000
Cons ci ratio: 2.711324e-01	ci left: 1.246161e-04	ci right 1.643223e-04	k: 208	n:1450000
KS ci ratio: 3.601962e-03	ci left: 4.487770e-01	ci right 4.503970e-01	k: 651901	n:1450000
HTR3B   1450000 perm   1180 sec   (1229 perm/sec)   p_kst 4.495869e-01   p_cons 1.434483e-04   p_joint 9.710345e-04

Joint ci ratio: 1.040120e-01	ci left: 9.213560e-04	ci right 1.023106e-03	k: 1418	n:1460000
Cons ci ratio: 2.698443e-01	ci left: 1.250396e-04	ci right 1.646593e-04	k: 210	n:1460000
KS ci ratio: 3.589292e-03	ci left: 4.488230e-01	ci right 4.504375e-01	k: 656460	n:1460000
HTR3B   1460000 perm   1194 sec   (1223 perm/sec)   p_kst 4.496301e-01   p_cons 1.438356e-04   p_joint 9.712329e-04

Joint ci ratio: 1.037565e-01	ci left: 9.197264e-04	ci right 1.021032e-03	k: 1425	n:1470000
Cons ci ratio: 2.698445e-01	ci left: 1.241889e-04	ci right 1.635392e-04	k: 210	n:1470000
KS ci ratio: 3.577143e-03	ci left: 4.488146e-01	ci right 4.504236e-01	k: 660940	n:1470000
HTR3B   1470000 perm   1208 sec   (1217 perm/sec)   p_kst 4.496190e-01   p_cons 1.428571e-04   p_joint 9.693878e-04

Joint ci ratio: 1.033946e-01	ci left: 9.200937e-04	ci right 1.021065e-03	k: 1435	n:1480000
Cons ci ratio: 2.692073e-01	ci left: 1.239799e-04	ci right 1.631554e-04	k: 211	n:1480000
KS ci ratio: 3.564678e-03	ci left: 4.488672e-01	ci right 4.504708e-01	k: 665510	n:1480000
HTR3B   1480000 perm   1223 sec   (1210 perm/sec)   p_kst 4.496689e-01   p_cons 1.425676e-04   p_joint 9.695946e-04

Joint ci ratio: 1.031436e-01	ci left: 9.184952e-04	ci right 1.019031e-03	k: 1442	n:1490000
Cons ci ratio: 2.685747e-01	ci left: 1.237737e-04	ci right 1.627767e-04	k: 212	n:1490000
KS ci ratio: 3.552444e-03	ci left: 4.489050e-01	ci right 4.505032e-01	k: 670059	n:1490000
HTR3B   1490000 perm   1237 sec   (1204 perm/sec)   p_kst 4.497040e-01   p_cons 1.422819e-04   p_joint 9.677852e-04

Joint ci ratio: 1.029655e-01	ci left: 9.156193e-04	ci right 1.015657e-03	k: 1447	n:1500000
Cons ci ratio: 2.679465e-01	ci left: 1.235703e-04	ci right 1.624029e-04	k: 213	n:1500000
KS ci ratio: 3.540144e-03	ci left: 4.489690e-01	ci right 4.505619e-01	k: 674648	n:1500000
HTR3B   1500000 perm   1252 sec   (1198 perm/sec)   p_kst 4.497653e-01   p_cons 1.420000e-04   p_joint 9.646667e-04

Joint ci ratio: 1.026118e-01	ci left: 9.160078e-04	ci right 1.015723e-03	k: 1457	n:1510000
Cons ci ratio: 2.679466e-01	ci left: 1.227520e-04	ci right 1.613274e-04	k: 213	n:1510000
KS ci ratio: 3.528575e-03	ci left: 4.489474e-01	ci right 4.505349e-01	k: 679109	n:1510000
HTR3B   1510000 perm   1267 sec   (1192 perm/sec)   p_kst 4.497411e-01   p_cons 1.410596e-04   p_joint 9.649007e-04

Joint ci ratio: 1.023665e-01	ci left: 9.144687e-04	ci right 1.013764e-03	k: 1464	n:1520000
Cons ci ratio: 2.679467e-01	ci left: 1.219444e-04	ci right 1.602661e-04	k: 213	n:1520000
KS ci ratio: 3.517040e-03	ci left: 4.489372e-01	ci right 4.505196e-01	k: 683587	n:1520000
HTR3B   1520000 perm   1282 sec   (1186 perm/sec)   p_kst 4.497283e-01   p_cons 1.401316e-04   p_joint 9.631579e-04

Joint ci ratio: 1.020189e-01	ci left: 9.148607e-04	ci right 1.013841e-03	k: 1474	n:1530000
Cons ci ratio: 2.673229e-01	ci left: 1.217571e-04	ci right 1.599159e-04	k: 214	n:1530000
KS ci ratio: 3.505436e-03	ci left: 4.489527e-01	ci right 4.505299e-01	k: 688104	n:1530000
HTR3B   1530000 perm   1297 sec   (1180 perm/sec)   p_kst 4.497412e-01   p_cons 1.398693e-04   p_joint 9.633987e-04

Joint ci ratio: 1.036135e-01	ci left: 8.804498e-04	ci right 9.772871e-04	k: 1429	n:1540000
Cons ci ratio: 2.673230e-01	ci left: 1.209665e-04	ci right 1.588775e-04	k: 214	n:1540000
KS ci ratio: 3.494011e-03	ci left: 4.489589e-01	ci right 4.505309e-01	k: 692607	n:1540000
HTR3B   1540000 perm   1311 sec   (1174 perm/sec)   p_kst 4.497448e-01   p_cons 1.389610e-04   p_joint 9.279221e-04

Joint ci ratio: 1.032889e-01	ci left: 8.804257e-04	ci right 9.769386e-04	k: 1438	n:1550000
Cons ci ratio: 2.673232e-01	ci left: 1.201861e-04	ci right 1.578525e-04	k: 214	n:1550000
KS ci ratio: 3.483009e-03	ci left: 4.489205e-01	ci right 4.504874e-01	k: 697041	n:1550000
HTR3B   1550000 perm   1326 sec   (1169 perm/sec)   p_kst 4.497039e-01   p_cons 1.380645e-04   p_joint 9.277419e-04

Joint ci ratio: 1.029675e-01	ci left: 8.804023e-04	ci right 9.765942e-04	k: 1447	n:1560000
Cons ci ratio: 2.673233e-01	ci left: 1.194156e-04	ci right 1.568407e-04	k: 214	n:1560000
KS ci ratio: 3.471464e-03	ci left: 4.489749e-01	ci right 4.505368e-01	k: 701619	n:1560000
HTR3B   1560000 perm   1341 sec   (1163 perm/sec)   p_kst 4.497558e-01   p_cons 1.371795e-04   p_joint 9.275641e-04

Joint ci ratio: 1.045330e-01	ci left: 8.481160e-04	ci right 9.422758e-04	k: 1404	n:1570000
Cons ci ratio: 2.642677e-01	ci left: 1.216276e-04	ci right 1.592381e-04	k: 219	n:1570000
KS ci ratio: 3.460318e-03	ci left: 4.489879e-01	ci right 4.505448e-01	k: 706133	n:1570000
HTR3B   1570000 perm   1357 sec   (1157 perm/sec)   p_kst 4.497662e-01   p_cons 1.394904e-04   p_joint 8.942675e-04

Joint ci ratio: 1.040893e-01	ci left: 8.501451e-04	ci right 9.441050e-04	k: 1416	n:1580000
Cons ci ratio: 2.636692e-01	ci left: 1.214488e-04	ci right 1.589049e-04	k: 220	n:1580000
KS ci ratio: 3.449547e-03	ci left: 4.489621e-01	ci right 4.505141e-01	k: 710586	n:1580000
HTR3B   1580000 perm   1372 sec   (1151 perm/sec)   p_kst 4.497380e-01   p_cons 1.392405e-04   p_joint 8.962025e-04

Joint ci ratio: 1.036876e-01	ci left: 8.515368e-04	ci right 9.452651e-04	k: 1427	n:1590000
Cons ci ratio: 2.630747e-01	ci left: 1.212724e-04	ci right 1.585759e-04	k: 221	n:1590000
KS ci ratio: 3.438815e-03	ci left: 4.489454e-01	ci right 4.504925e-01	k: 715053	n:1590000
HTR3B   1590000 perm   1388 sec   (1146 perm/sec)   p_kst 4.497189e-01   p_cons 1.389937e-04   p_joint 8.974843e-04

Joint ci ratio: 1.035790e-01	ci left: 8.480410e-04	ci right 9.412808e-04	k: 1430	n:1600000
Cons ci ratio: 2.630748e-01	ci left: 1.205144e-04	ci right 1.575848e-04	k: 221	n:1600000
KS ci ratio: 3.427888e-03	ci left: 4.489715e-01	ci right 4.505137e-01	k: 719588	n:1600000
HTR3B   1600000 perm   1404 sec   (1140 perm/sec)   p_kst 4.497425e-01   p_cons 1.381250e-04   p_joint 8.937500e-04

Joint ci ratio: 1.032907e-01	ci left: 8.476140e-04	ci right 9.405318e-04	k: 1438	n:1610000
Cons ci ratio: 2.630750e-01	ci left: 1.197659e-04	ci right 1.566060e-04	k: 221	n:1610000
KS ci ratio: 3.417378e-03	ci left: 4.489519e-01	ci right 4.504893e-01	k: 724050	n:1610000
HTR3B   1610000 perm   1419 sec   (1134 perm/sec)   p_kst 4.497205e-01   p_cons 1.372671e-04   p_joint 8.931677e-04

Joint ci ratio: 1.031119e-01	ci left: 8.453885e-04	ci right 9.378922e-04	k: 1443	n:1620000
Cons ci ratio: 2.630751e-01	ci left: 1.190266e-04	ci right 1.556393e-04	k: 221	n:1620000
KS ci ratio: 3.406747e-03	ci left: 4.489640e-01	ci right 4.504967e-01	k: 728563	n:1620000
HTR3B   1620000 perm   1435 sec   (1129 perm/sec)   p_kst 4.497302e-01   p_cons 1.364198e-04   p_joint 8.907407e-04

Joint ci ratio: 1.028629e-01	ci left: 8.443860e-04	ci right 9.365433e-04	k: 1450	n:1630000
Cons ci ratio: 2.618979e-01	ci left: 1.194426e-04	ci right 1.559920e-04	k: 223	n:1630000
KS ci ratio: 3.396269e-03	ci left: 4.489680e-01	ci right 4.504960e-01	k: 733063	n:1630000
HTR3B   1630000 perm   1451 sec   (1124 perm/sec)   p_kst 4.497319e-01   p_cons 1.368098e-04   p_joint 8.895706e-04

Joint ci ratio: 1.027216e-01	ci left: 8.416135e-04	ci right 9.333345e-04	k: 1454	n:1640000
Cons ci ratio: 2.613153e-01	ci left: 1.192841e-04	ci right 1.556905e-04	k: 224	n:1640000
KS ci ratio: 3.385500e-03	ci left: 4.490287e-01	ci right 4.505520e-01	k: 737656	n:1640000
HTR3B   1640000 perm   1466 sec   (1118 perm/sec)   p_kst 4.497902e-01   p_cons 1.365854e-04   p_joint 8.865854e-04

Joint ci ratio: 1.025457e-01	ci left: 8.394653e-04	ci right 9.307860e-04	k: 1459	n:1650000
Cons ci ratio: 2.613154e-01	ci left: 1.185611e-04	ci right 1.547469e-04	k: 224	n:1650000
KS ci ratio: 3.375787e-03	ci left: 4.489486e-01	ci right 4.504673e-01	k: 742018	n:1650000
HTR3B   1650000 perm   1482 sec   (1113 perm/sec)   p_kst 4.497079e-01   p_cons 1.357576e-04   p_joint 8.842424e-04

Joint ci ratio: 1.029703e-01	ci left: 8.273649e-04	ci right 9.177646e-04	k: 1447	n:1660000
Cons ci ratio: 2.607367e-01	ci left: 1.184099e-04	ci right 1.544565e-04	k: 225	n:1660000
KS ci ratio: 3.365698e-03	ci left: 4.489370e-01	ci right 4.504511e-01	k: 746492	n:1660000
HTR3B   1660000 perm   1498 sec   (1108 perm/sec)   p_kst 4.496940e-01   p_cons 1.355422e-04   p_joint 8.716867e-04

Joint ci ratio: 1.027578e-01	ci left: 8.259110e-04	ci right 9.159542e-04	k: 1453	n:1670000
Cons ci ratio: 2.601618e-01	ci left: 1.182606e-04	ci right 1.541694e-04	k: 226	n:1670000
KS ci ratio: 3.355330e-03	ci left: 4.489800e-01	ci right 4.504896e-01	k: 751057	n:1670000
HTR3B   1670000 perm   1514 sec   (1103 perm/sec)   p_kst 4.497347e-01   p_cons 1.353293e-04   p_joint 8.700599e-04

Joint ci ratio: 1.026521e-01	ci left: 8.227346e-04	ci right 9.123338e-04	k: 1456	n:1680000
Cons ci ratio: 2.601619e-01	ci left: 1.175567e-04	ci right 1.532517e-04	k: 226	n:1680000
KS ci ratio: 3.345809e-03	ci left: 4.489112e-01	ci right 4.504163e-01	k: 755435	n:1680000
HTR3B   1680000 perm   1531 sec   (1098 perm/sec)   p_kst 4.496637e-01   p_cons 1.345238e-04   p_joint 8.666667e-04

Joint ci ratio: 1.034730e-01	ci left: 8.046073e-04	ci right 8.929756e-04	k: 1433	n:1690000
Cons ci ratio: 2.595908e-01	ci left: 1.174142e-04	ci right 1.529751e-04	k: 227	n:1690000
KS ci ratio: 3.335838e-03	ci left: 4.489220e-01	ci right 4.504226e-01	k: 759946	n:1690000
HTR3B   1690000 perm   1547 sec   (1093 perm/sec)   p_kst 4.496722e-01   p_cons 1.343195e-04   p_joint 8.479290e-04

Joint ci ratio: 1.037633e-01	ci left: 7.952902e-04	ci right 8.828953e-04	k: 1425	n:1700000
Cons ci ratio: 2.590234e-01	ci left: 1.172736e-04	ci right 1.527016e-04	k: 228	n:1700000
KS ci ratio: 3.325620e-03	ci left: 4.489826e-01	ci right 4.504788e-01	k: 764542	n:1700000
HTR3B   1700000 perm   1563 sec   (1087 perm/sec)   p_kst 4.497306e-01   p_cons 1.341176e-04   p_joint 8.382353e-04

Joint ci ratio: 1.034014e-01	ci left: 7.963358e-04	ci right 8.837315e-04	k: 1435	n:1710000
Cons ci ratio: 2.567902e-01	ci left: 1.187757e-04	ci right 1.542987e-04	k: 232	n:1710000
KS ci ratio: 3.316012e-03	ci left: 4.489653e-01	ci right 4.504571e-01	k: 769006	n:1710000
HTR3B   1710000 perm   1580 sec   (1082 perm/sec)   p_kst 4.497111e-01   p_cons 1.356725e-04   p_joint 8.391813e-04

Joint ci ratio: 1.031146e-01	ci left: 7.962370e-04	ci right 8.833648e-04	k: 1443	n:1720000
Cons ci ratio: 2.556951e-01	ci left: 1.191733e-04	ci right 1.546389e-04	k: 234	n:1720000
KS ci ratio: 3.306258e-03	ci left: 4.489825e-01	ci right 4.504700e-01	k: 773529	n:1720000
HTR3B   1720000 perm   1597 sec   (1077 perm/sec)   p_kst 4.497262e-01   p_cons 1.360465e-04   p_joint 8.389535e-04

Joint ci ratio: 1.026181e-01	ci left: 7.995188e-04	ci right 8.865592e-04	k: 1457	n:1730000
Cons ci ratio: 2.540783e-01	ci left: 1.201078e-04	ci right 1.555896e-04	k: 237	n:1730000
KS ci ratio: 3.296463e-03	ci left: 4.490186e-01	ci right 4.505018e-01	k: 778085	n:1730000
HTR3B   1730000 perm   1614 sec   (1072 perm/sec)   p_kst 4.497601e-01   p_cons 1.369942e-04   p_joint 8.421965e-04

Joint ci ratio: 1.024427e-01	ci left: 7.977238e-04	ci right 8.844113e-04	k: 1462	n:1740000
Cons ci ratio: 2.540784e-01	ci left: 1.194175e-04	ci right 1.546955e-04	k: 237	n:1740000
KS ci ratio: 3.286799e-03	ci left: 4.490474e-01	ci right 4.505263e-01	k: 782629	n:1740000
HTR3B   1740000 perm   1630 sec   (1067 perm/sec)   p_kst 4.497868e-01   p_cons 1.362069e-04   p_joint 8.402299e-04

Joint ci ratio: 1.021986e-01	ci left: 7.970630e-04	ci right 8.834598e-04	k: 1469	n:1750000
Cons ci ratio: 2.530175e-01	ci left: 1.198054e-04	ci right 1.550268e-04	k: 239	n:1750000
KS ci ratio: 3.277572e-03	ci left: 4.490228e-01	ci right 4.504974e-01	k: 787080	n:1750000
HTR3B   1750000 perm   1648 sec   (1062 perm/sec)   p_kst 4.497600e-01   p_cons 1.365714e-04   p_joint 8.394286e-04

Joint ci ratio: 1.017495e-01	ci left: 7.997322e-04	ci right 8.860148e-04	k: 1482	n:1760000
Cons ci ratio: 2.514507e-01	ci left: 1.207215e-04	ci right 1.559580e-04	k: 242	n:1760000
KS ci ratio: 3.268126e-03	ci left: 4.490433e-01	ci right 4.505137e-01	k: 791610	n:1760000
HTR3B   1760000 perm   1665 sec   (1057 perm/sec)   p_kst 4.497784e-01   p_cons 1.375000e-04   p_joint 8.420455e-04

Joint ci ratio: 1.014762e-01	ci left: 7.996189e-04	ci right 8.856437e-04	k: 1490	n:1770000
Cons ci ratio: 2.514508e-01	ci left: 1.200394e-04	ci right 1.550769e-04	k: 242	n:1770000
KS ci ratio: 3.258724e-03	ci left: 4.490692e-01	ci right 4.505355e-01	k: 796150	n:1770000
HTR3B   1770000 perm   1682 sec   (1052 perm/sec)   p_kst 4.498023e-01   p_cons 1.367232e-04   p_joint 8.418079e-04

Joint ci ratio: 1.011375e-01	ci left: 8.006023e-04	ci right 8.864284e-04	k: 1500	n:1780000
Cons ci ratio: 2.514509e-01	ci left: 1.193650e-04	ci right 1.542057e-04	k: 242	n:1780000
KS ci ratio: 3.249443e-03	ci left: 4.490886e-01	ci right 4.505508e-01	k: 800679	n:1780000
HTR3B   1780000 perm   1699 sec   (1048 perm/sec)   p_kst 4.498197e-01   p_cons 1.359551e-04   p_joint 8.426966e-04

Joint ci ratio: 1.020260e-01	ci left: 7.819731e-04	ci right 8.665827e-04	k: 1474	n:1790000
Cons ci ratio: 2.514510e-01	ci left: 1.186982e-04	ci right 1.533442e-04	k: 242	n:1790000
KS ci ratio: 3.240143e-03	ci left: 4.491230e-01	ci right 4.505811e-01	k: 805235	n:1790000
HTR3B   1790000 perm   1716 sec   (1043 perm/sec)   p_kst 4.498520e-01   p_cons 1.351955e-04   p_joint 8.234637e-04

Joint ci ratio: 1.017505e-01	ci left: 7.819600e-04	ci right 8.663260e-04	k: 1482	n:1800000
Cons ci ratio: 2.509352e-01	ci left: 1.185593e-04	ci right 1.530828e-04	k: 243	n:1800000
KS ci ratio: 3.231302e-03	ci left: 4.490986e-01	ci right 4.505527e-01	k: 809686	n:1800000
HTR3B   1800000 perm   1734 sec   (1038 perm/sec)   p_kst 4.498256e-01   p_cons 1.350000e-04   p_joint 8.233333e-04

Joint ci ratio: 1.015795e-01	ci left: 7.803320e-04	ci right 8.643724e-04	k: 1487	n:1810000
Cons ci ratio: 2.499130e-01	ci left: 1.189399e-04	ci right 1.534112e-04	k: 245	n:1810000
KS ci ratio: 3.221944e-03	ci left: 4.491651e-01	ci right 4.506152e-01	k: 814301	n:1810000
HTR3B   1810000 perm   1752 sec   (1033 perm/sec)   p_kst 4.498901e-01   p_cons 1.353591e-04   p_joint 8.215470e-04

Joint ci ratio: 1.012398e-01	ci left: 7.813996e-04	ci right 8.652568e-04	k: 1497	n:1820000
Cons ci ratio: 2.494066e-01	ci left: 1.188015e-04	ci right 1.531520e-04	k: 246	n:1820000
KS ci ratio: 3.213401e-03	ci left: 4.491177e-01	ci right 4.505638e-01	k: 818710	n:1820000
HTR3B   1820000 perm   1769 sec   (1029 perm/sec)   p_kst 4.498407e-01   p_cons 1.351648e-04   p_joint 8.225275e-04

Joint ci ratio: 1.009035e-01	ci left: 7.824560e-04	ci right 8.661312e-04	k: 1507	n:1830000
Cons ci ratio: 2.484029e-01	ci left: 1.191770e-04	ci right 1.534761e-04	k: 248	n:1830000
KS ci ratio: 3.204677e-03	ci left: 4.491091e-01	ci right 4.505512e-01	k: 823189	n:1830000
HTR3B   1830000 perm   1787 sec   (1024 perm/sec)   p_kst 4.498301e-01   p_cons 1.355191e-04   p_joint 8.234973e-04

Joint ci ratio: 1.014098e-01	ci left: 7.702574e-04	ci right 8.530659e-04	k: 1492	n:1840000
Cons ci ratio: 2.484030e-01	ci left: 1.185293e-04	ci right 1.526420e-04	k: 248	n:1840000
KS ci ratio: 3.195990e-03	ci left: 4.491060e-01	ci right 4.505442e-01	k: 827678	n:1840000
HTR3B   1840000 perm   1805 sec   (1020 perm/sec)   p_kst 4.498250e-01   p_cons 1.347826e-04   p_joint 8.108696e-04

Joint ci ratio: 1.011055e-01	ci left: 7.708355e-04	ci right 8.534428e-04	k: 1501	n:1850000
Cons ci ratio: 2.479057e-01	ci left: 1.183956e-04	ci right 1.523909e-04	k: 249	n:1850000
KS ci ratio: 3.187122e-03	ci left: 4.491419e-01	ci right 4.505761e-01	k: 832239	n:1850000
HTR3B   1850000 perm   1823 sec   (1015 perm/sec)   p_kst 4.498589e-01   p_cons 1.345946e-04   p_joint 8.113514e-04

Joint ci ratio: 1.008707e-01	ci left: 7.703596e-04	ci right 8.527128e-04	k: 1508	n:1860000
Cons ci ratio: 2.464315e-01	ci left: 1.192720e-04	ci right 1.532842e-04	k: 252	n:1860000
KS ci ratio: 3.178683e-03	ci left: 4.491220e-01	ci right 4.505524e-01	k: 836697	n:1860000
HTR3B   1860000 perm   1841 sec   (1010 perm/sec)   p_kst 4.498371e-01   p_cons 1.354839e-04   p_joint 8.107527e-04

Joint ci ratio: 1.007041e-01	ci left: 7.688464e-04	ci right 8.508941e-04	k: 1513	n:1870000
Cons ci ratio: 2.464316e-01	ci left: 1.186342e-04	ci right 1.524645e-04	k: 252	n:1870000
KS ci ratio: 3.170297e-03	ci left: 4.491044e-01	ci right 4.505310e-01	k: 841159	n:1870000
HTR3B   1870000 perm   1859 sec   (1006 perm/sec)   p_kst 4.498176e-01   p_cons 1.347594e-04   p_joint 8.090909e-04

Joint ci ratio: 1.004391e-01	ci left: 7.689051e-04	ci right 8.507304e-04	k: 1521	n:1880000
Cons ci ratio: 2.459460e-01	ci left: 1.185023e-04	ci right 1.522182e-04	k: 253	n:1880000
KS ci ratio: 3.161984e-03	ci left: 4.490860e-01	ci right 4.505088e-01	k: 845619	n:1880000
HTR3B   1880000 perm   1877 sec   (1002 perm/sec)   p_kst 4.497973e-01   p_cons 1.345745e-04   p_joint 8.090426e-04

Joint ci ratio: 1.000454e-01	ci left: 7.710269e-04	ci right 8.527374e-04	k: 1533	n:1890000
Cons ci ratio: 2.454633e-01	ci left: 1.183718e-04	ci right 1.519745e-04	k: 254	n:1890000
KS ci ratio: 3.153665e-03	ci left: 4.490789e-01	ci right 4.504979e-01	k: 850100	n:1890000
HTR3B   1890000 perm   1895 sec   (998 perm/sec)   p_kst 4.497884e-01   p_cons 1.343915e-04   p_joint 8.111111e-04

Joint ci ratio: 1.002420e-01	ci left: 7.638899e-04	ci right 8.450125e-04	k: 1527	n:1900000
Cons ci ratio: 2.445063e-01	ci left: 1.187368e-04	ci right 1.522917e-04	k: 256	n:1900000
KS ci ratio: 3.145100e-03	ci left: 4.491209e-01	ci right 4.505361e-01	k: 854674	n:1900000
HTR3B   1900000 perm   1913 sec   (993 perm/sec)   p_kst 4.498284e-01   p_cons 1.347368e-04   p_joint 8.036842e-04

Joint ci ratio: 9.988301e-02	ci left: 7.655055e-04	ci right 8.464916e-04	k: 1538	n:1910000
Cons ci ratio: 2.445064e-01	ci left: 1.181152e-04	ci right 1.514944e-04	k: 256	n:1910000
KS ci ratio: 3.136847e-03	ci left: 4.491241e-01	ci right 4.505357e-01	k: 859175	n:1910000
HTR3B   1910000 perm   1931 sec   (989 perm/sec)   p_kst 4.498298e-01   p_cons 1.340314e-04   p_joint 8.052356e-04

Joint ci ratio: 9.959220e-02	ci left: 7.660891e-04	ci right 8.468871e-04	k: 1547	n:1920000
Cons ci ratio: 2.435605e-01	ci left: 1.184779e-04	ci right 1.518106e-04	k: 258	n:1920000
KS ci ratio: 3.128580e-03	ci left: 4.491399e-01	ci right 4.505478e-01	k: 863700	n:1920000
HTR3B   1920000 perm   1950 sec   (985 perm/sec)   p_kst 4.498437e-01   p_cons 1.343750e-04   p_joint 8.057292e-04

Joint ci ratio: 9.920831e-02	ci left: 7.681828e-04	ci right 8.488712e-04	k: 1559	n:1930000
Cons ci ratio: 2.421619e-01	ci left: 1.193239e-04	ci right 1.526728e-04	k: 261	n:1930000
KS ci ratio: 3.120534e-03	ci left: 4.491306e-01	ci right 4.505348e-01	k: 868177	n:1930000
HTR3B   1930000 perm   1968 sec   (981 perm/sec)   p_kst 4.498326e-01   p_cons 1.352332e-04   p_joint 8.077720e-04

Joint ci ratio: 9.991612e-02	ci left: 7.531650e-04	ci right 8.328734e-04	k: 1537	n:1940000
Cons ci ratio: 2.417011e-01	ci left: 1.191930e-04	ci right 1.524325e-04	k: 262	n:1940000
KS ci ratio: 3.112447e-03	ci left: 4.491379e-01	ci right 4.505385e-01	k: 872686	n:1940000
HTR3B   1940000 perm   1986 sec   (977 perm/sec)   p_kst 4.498381e-01   p_cons 1.350515e-04   p_joint 7.922680e-04

Joint ci ratio: 1.003416e-01	ci left: 7.428027e-04	ci right 8.217690e-04	k: 1524	n:1950000
Cons ci ratio: 2.412429e-01	ci left: 1.190636e-04	ci right 1.521946e-04	k: 263	n:1950000
KS ci ratio: 3.104354e-03	ci left: 4.491559e-01	ci right 4.505529e-01	k: 877216	n:1950000
HTR3B   1950000 perm   2005 sec   (973 perm/sec)   p_kst 4.498544e-01   p_cons 1.348718e-04   p_joint 7.815385e-04

Joint ci ratio: 9.994905e-02	ci left: 7.449820e-04	ci right 8.238520e-04	k: 1536	n:1960000
Cons ci ratio: 2.389902e-01	ci left: 1.208537e-04	ci right 1.541222e-04	k: 268	n:1960000
KS ci ratio: 3.096340e-03	ci left: 4.491712e-01	ci right 4.505646e-01	k: 881741	n:1960000
HTR3B   1960000 perm   2023 sec   (969 perm/sec)   p_kst 4.498679e-01   p_cons 1.367347e-04   p_joint 7.836735e-04

Joint ci ratio: 9.972225e-02	ci left: 7.446650e-04	ci right 8.233120e-04	k: 1543	n:1970000
Cons ci ratio: 2.389902e-01	ci left: 1.202402e-04	ci right 1.533399e-04	k: 268	n:1970000
KS ci ratio: 3.088290e-03	ci left: 4.492021e-01	ci right 4.505920e-01	k: 886297	n:1970000
HTR3B   1970000 perm   2042 sec   (965 perm/sec)   p_kst 4.498970e-01   p_cons 1.360406e-04   p_joint 7.832487e-04

Joint ci ratio: 9.952909e-02	ci left: 7.438588e-04	ci right 8.222596e-04	k: 1549	n:1980000
Cons ci ratio: 2.385473e-01	ci left: 1.201078e-04	ci right 1.531007e-04	k: 269	n:1980000
KS ci ratio: 3.080475e-03	ci left: 4.492049e-01	ci right 4.505912e-01	k: 890798	n:1980000
HTR3B   1980000 perm   2061 sec   (961 perm/sec)   p_kst 4.498980e-01   p_cons 1.358586e-04   p_joint 7.823232e-04

Joint ci ratio: 9.930513e-02	ci left: 7.435510e-04	ci right 8.217327e-04	k: 1556	n:1990000
Cons ci ratio: 2.372329e-01	ci left: 1.209219e-04	ci right 1.539285e-04	k: 272	n:1990000
KS ci ratio: 3.072722e-03	ci left: 4.492071e-01	ci right 4.505900e-01	k: 895298	n:1990000
HTR3B   1990000 perm   2080 sec   (957 perm/sec)   p_kst 4.498985e-01   p_cons 1.366834e-04   p_joint 7.819095e-04

Joint ci ratio: 1.009405e-01	ci left: 7.154587e-04	ci right 7.919989e-04	k: 1506	n:2000000
Cons ci ratio: 2.367996e-01	ci left: 1.207876e-04	ci right 1.536885e-04	k: 273	n:2000000
KS ci ratio: 3.065152e-03	ci left: 4.491894e-01	ci right 4.505688e-01	k: 899758	n:2000000
HTR3B   2000000 perm   2098 sec   (953 perm/sec)   p_kst 4.498790e-01   p_cons 1.365000e-04   p_joint 7.530000e-04

Joint ci ratio: 1.012776e-01	ci left: 7.070497e-04	ci right 7.829579e-04	k: 1496	n:2010000
Cons ci ratio: 2.359400e-01	ci left: 1.211228e-04	ci right 1.539777e-04	k: 275	n:2010000
KS ci ratio: 3.057431e-03	ci left: 4.492051e-01	ci right 4.505811e-01	k: 904285	n:2010000
HTR3B   2010000 perm   2118 sec   (949 perm/sec)   p_kst 4.498930e-01   p_cons 1.368159e-04   p_joint 7.442786e-04

Joint ci ratio: 1.011089e-01	ci left: 7.059620e-04	ci right 7.816197e-04	k: 1501	n:2020000
Cons ci ratio: 2.355138e-01	ci left: 1.209890e-04	ci right 1.537397e-04	k: 276	n:2020000
KS ci ratio: 3.049942e-03	ci left: 4.491925e-01	ci right 4.505651e-01	k: 908755	n:2020000
HTR3B   2020000 perm   2137 sec   (945 perm/sec)   p_kst 4.498787e-01   p_cons 1.366337e-04   p_joint 7.430693e-04

Joint ci ratio: 1.009746e-01	ci left: 7.044050e-04	ci right 7.797897e-04	k: 1505	n:2030000
Cons ci ratio: 2.355138e-01	ci left: 1.203930e-04	ci right 1.529824e-04	k: 276	n:2030000
KS ci ratio: 3.042713e-03	ci left: 4.491465e-01	ci right 4.505157e-01	k: 913157	n:2030000
HTR3B   2030000 perm   2156 sec   (942 perm/sec)   p_kst 4.498310e-01   p_cons 1.359606e-04   p_joint 7.413793e-04

Joint ci ratio: 1.007741e-01	ci left: 7.038190e-04	ci right 7.789825e-04	k: 1511	n:2040000
Cons ci ratio: 2.350899e-01	ci left: 1.202641e-04	ci right 1.527515e-04	k: 277	n:2040000
KS ci ratio: 3.035241e-03	ci left: 4.491490e-01	ci right 4.505148e-01	k: 917657	n:2040000
HTR3B   2040000 perm   2176 sec   (938 perm/sec)   p_kst 4.498319e-01   p_cons 1.357843e-04   p_joint 7.406863e-04

Joint ci ratio: 1.005748e-01	ci left: 7.032389e-04	ci right 7.781831e-04	k: 1517	n:2050000
Cons ci ratio: 2.350900e-01	ci left: 1.196774e-04	ci right 1.520064e-04	k: 277	n:2050000
KS ci ratio: 3.027950e-03	ci left: 4.491310e-01	ci right 4.504935e-01	k: 922115	n:2050000
HTR3B   2050000 perm   2195 sec   (934 perm/sec)   p_kst 4.498122e-01   p_cons 1.351220e-04   p_joint 7.400000e-04

Joint ci ratio: 1.003437e-01	ci left: 7.031378e-04	ci right 7.778889e-04	k: 1524	n:2060000
Cons ci ratio: 2.346683e-01	ci left: 1.195534e-04	ci right 1.517824e-04	k: 278	n:2060000
KS ci ratio: 3.020295e-03	ci left: 4.491812e-01	ci right 4.505403e-01	k: 926713	n:2060000
HTR3B   2060000 perm   2215 sec   (930 perm/sec)   p_kst 4.498607e-01   p_cons 1.349515e-04   p_joint 7.398058e-04

Joint ci ratio: 1.001142e-01	ci left: 7.030378e-04	ci right 7.775974e-04	k: 1531	n:2070000
Cons ci ratio: 2.346684e-01	ci left: 1.189758e-04	ci right 1.510492e-04	k: 278	n:2070000
KS ci ratio: 3.013143e-03	ci left: 4.491579e-01	ci right 4.505138e-01	k: 931160	n:2070000
HTR3B   2070000 perm   2235 sec   (926 perm/sec)   p_kst 4.498357e-01   p_cons 1.342995e-04   p_joint 7.396135e-04

Joint ci ratio: 9.991879e-02	ci left: 7.024703e-04	ci right 7.768157e-04	k: 1537	n:2080000
Cons ci ratio: 2.338317e-01	ci left: 1.193089e-04	ci right 1.513409e-04	k: 280	n:2080000
KS ci ratio: 3.005723e-03	ci left: 4.491872e-01	ci right 4.505398e-01	k: 935716	n:2080000
HTR3B   2080000 perm   2255 sec   (923 perm/sec)   p_kst 4.498635e-01   p_cons 1.346154e-04   p_joint 7.389423e-04

Joint ci ratio: 9.962768e-02	ci left: 7.033080e-04	ci right 7.775125e-04	k: 1546	n:2090000
Cons ci ratio: 2.330040e-01	ci left: 1.196390e-04	ci right 1.516295e-04	k: 282	n:2090000
KS ci ratio: 2.998346e-03	ci left: 4.492182e-01	ci right 4.505676e-01	k: 940276	n:2090000
HTR3B   2090000 perm   2274 sec   (919 perm/sec)   p_kst 4.498928e-01   p_cons 1.349282e-04   p_joint 7.397129e-04

Joint ci ratio: 9.937106e-02	ci left: 7.036736e-04	ci right 7.777144e-04	k: 1554	n:2100000
Cons ci ratio: 2.321849e-01	ci left: 1.199662e-04	ci right 1.519153e-04	k: 284	n:2100000
KS ci ratio: 2.991417e-03	ci left: 4.491837e-01	ci right 4.505298e-01	k: 944699	n:2100000
HTR3B   2100000 perm   2294 sec   (915 perm/sec)   p_kst 4.498567e-01   p_cons 1.352381e-04   p_joint 7.400000e-04

Joint ci ratio: 9.930734e-02	ci left: 7.012630e-04	ci right 7.750000e-04	k: 1556	n:2110000
Cons ci ratio: 2.317787e-01	ci left: 1.198441e-04	ci right 1.516967e-04	k: 285	n:2110000
KS ci ratio: 2.984396e-03	ci left: 4.491727e-01	ci right 4.505156e-01	k: 949171	n:2110000
HTR3B   2110000 perm   2314 sec   (912 perm/sec)   p_kst 4.498441e-01   p_cons 1.350711e-04   p_joint 7.374408e-04

Joint ci ratio: 9.886371e-02	ci left: 7.043953e-04	ci right 7.781116e-04	k: 1570	n:2120000
Cons ci ratio: 2.301745e-01	ci left: 1.210564e-04	ci right 1.529769e-04	k: 289	n:2120000
KS ci ratio: 2.977364e-03	ci left: 4.491717e-01	ci right 4.505115e-01	k: 953664	n:2120000
HTR3B   2120000 perm   2334 sec   (908 perm/sec)   p_kst 4.498415e-01   p_cons 1.363208e-04   p_joint 7.405660e-04

Joint ci ratio: 9.892692e-02	ci left: 7.001725e-04	ci right 7.734964e-04	k: 1568	n:2130000
Cons ci ratio: 2.289930e-01	ci left: 1.218155e-04	ci right 1.537480e-04	k: 292	n:2130000
KS ci ratio: 2.970376e-03	ci left: 4.491717e-01	ci right 4.505083e-01	k: 958159	n:2130000
HTR3B   2130000 perm   2354 sec   (905 perm/sec)   p_kst 4.498399e-01   p_cons 1.370892e-04   p_joint 7.361502e-04

Joint ci ratio: 9.867566e-02	ci left: 7.005466e-04	ci right 7.737126e-04	k: 1576	n:2140000
Cons ci ratio: 2.282154e-01	ci left: 1.221273e-04	ci right 1.540176e-04	k: 294	n:2140000
KS ci ratio: 2.963547e-03	ci left: 4.491534e-01	ci right 4.504869e-01	k: 962615	n:2140000
HTR3B   2140000 perm   2375 sec   (901 perm/sec)   p_kst 4.498201e-01   p_cons 1.373832e-04   p_joint 7.364486e-04

Joint ci ratio: 1.002467e-01	ci left: 6.750639e-04	ci right 7.467571e-04	k: 1527	n:2150000
Cons ci ratio: 2.282155e-01	ci left: 1.215593e-04	ci right 1.533012e-04	k: 294	n:2150000
KS ci ratio: 2.956683e-03	ci left: 4.491488e-01	ci right 4.504792e-01	k: 967100	n:2150000
HTR3B   2150000 perm   2395 sec   (898 perm/sec)   p_kst 4.498140e-01   p_cons 1.367442e-04   p_joint 7.102326e-04

Joint ci ratio: 1.000178e-01	ci left: 6.750982e-04	ci right 7.466217e-04	k: 1534	n:2160000
Cons ci ratio: 2.278297e-01	ci left: 1.214330e-04	ci right 1.530809e-04	k: 295	n:2160000
KS ci ratio: 2.949845e-03	ci left: 4.491480e-01	ci right 4.504753e-01	k: 971593	n:2160000
HTR3B   2160000 perm   2417 sec   (894 perm/sec)   p_kst 4.498116e-01   p_cons 1.365741e-04   p_joint 7.101852e-04

Joint ci ratio: 9.988783e-02	ci left: 6.737844e-04	ci right 7.450705e-04	k: 1538	n:2170000
Cons ci ratio: 2.278298e-01	ci left: 1.208734e-04	ci right 1.523754e-04	k: 295	n:2170000
KS ci ratio: 2.942975e-03	ci left: 4.491605e-01	ci right 4.504848e-01	k: 976115	n:2170000
HTR3B   2170000 perm   2438 sec   (890 perm/sec)   p_kst 4.498226e-01   p_cons 1.359447e-04   p_joint 7.087558e-04

Joint ci ratio: 9.956482e-02	ci left: 6.751664e-04	ci right 7.463542e-04	k: 1548	n:2180000
Cons ci ratio: 2.270639e-01	ci left: 1.211841e-04	ci right 1.526461e-04	k: 297	n:2180000
KS ci ratio: 2.936020e-03	ci left: 4.491954e-01	ci right 4.505166e-01	k: 980686	n:2180000
HTR3B   2180000 perm   2461 sec   (886 perm/sec)   p_kst 4.498560e-01   p_cons 1.362385e-04   p_joint 7.100917e-04

Joint ci ratio: 9.934061e-02	ci left: 6.752003e-04	ci right 7.462220e-04	k: 1555	n:2190000
Cons ci ratio: 2.270640e-01	ci left: 1.206308e-04	ci right 1.519491e-04	k: 297	n:2190000
KS ci ratio: 2.929170e-03	ci left: 4.492204e-01	ci right 4.505386e-01	k: 985236	n:2190000
HTR3B   2190000 perm   2481 sec   (883 perm/sec)   p_kst 4.498795e-01   p_cons 1.356164e-04   p_joint 7.100457e-04

Joint ci ratio: 9.908620e-02	ci left: 6.756774e-04	ci right 7.465567e-04	k: 1563	n:2200000
Cons ci ratio: 2.263058e-01	ci left: 1.209399e-04	ci right 1.522190e-04	k: 299	n:2200000
KS ci ratio: 2.922614e-03	ci left: 4.492034e-01	ci right 4.505186e-01	k: 989694	n:2200000
HTR3B   2200000 perm   2501 sec   (880 perm/sec)   p_kst 4.498609e-01   p_cons 1.359091e-04   p_joint 7.104545e-04

Joint ci ratio: 9.886520e-02	ci left: 6.757090e-04	ci right 7.464244e-04	k: 1570	n:2210000
Cons ci ratio: 2.251826e-01	ci left: 1.216734e-04	ci right 1.529643e-04	k: 302	n:2210000
KS ci ratio: 2.916199e-03	ci left: 4.491702e-01	ci right 4.504824e-01	k: 994116	n:2210000
HTR3B   2210000 perm   2522 sec   (876 perm/sec)   p_kst 4.498262e-01   p_cons 1.366516e-04   p_joint 7.104072e-04

Joint ci ratio: 9.848966e-02	ci left: 6.779373e-04	ci right 7.486008e-04	k: 1582	n:2220000
Cons ci ratio: 2.248120e-01	ci left: 1.215504e-04	ci right 1.527511e-04	k: 303	n:2220000
KS ci ratio: 2.909521e-03	ci left: 4.491891e-01	ci right 4.504984e-01	k: 998653	n:2220000
HTR3B   2220000 perm   2543 sec   (873 perm/sec)   p_kst 4.498437e-01   p_cons 1.364865e-04   p_joint 7.126126e-04

Joint ci ratio: 9.814915e-02	ci left: 6.797087e-04	ci right 7.502978e-04	k: 1593	n:2230000
Cons ci ratio: 2.248120e-01	ci left: 1.210053e-04	ci right 1.520661e-04	k: 303	n:2230000
KS ci ratio: 2.902867e-03	ci left: 4.492115e-01	ci right 4.505178e-01	k: 1003198	n:2230000
HTR3B   2230000 perm   2564 sec   (870 perm/sec)   p_kst 4.498646e-01   p_cons 1.358744e-04   p_joint 7.143498e-04

Joint ci ratio: 9.790376e-02	ci left: 6.801582e-04	ci right 7.506072e-04	k: 1601	n:2240000
Cons ci ratio: 2.248121e-01	ci left: 1.204651e-04	ci right 1.513873e-04	k: 303	n:2240000
KS ci ratio: 2.896346e-03	ci left: 4.492189e-01	ci right 4.505223e-01	k: 1007710	n:2240000
HTR3B   2240000 perm   2585 sec   (867 perm/sec)   p_kst 4.498705e-01   p_cons 1.352679e-04   p_joint 7.147321e-04

Joint ci ratio: 9.762986e-02	ci left: 6.810375e-04	ci right 7.513689e-04	k: 1610	n:2250000
Cons ci ratio: 2.240762e-01	ci left: 1.207686e-04	ci right 1.516532e-04	k: 305	n:2250000
KS ci ratio: 2.889837e-03	ci left: 4.492316e-01	ci right 4.505321e-01	k: 1012234	n:2250000
HTR3B   2250000 perm   2607 sec   (863 perm/sec)   p_kst 4.498818e-01   p_cons 1.355556e-04   p_joint 7.155556e-04

Joint ci ratio: 9.861504e-02	ci left: 6.642119e-04	ci right 7.335380e-04	k: 1578	n:2260000
Cons ci ratio: 2.229857e-01	ci left: 1.214874e-04	ci right 1.523838e-04	k: 308	n:2260000
KS ci ratio: 2.883343e-03	ci left: 4.492490e-01	ci right 4.505467e-01	k: 1016769	n:2260000
HTR3B   2260000 perm   2627 sec   (860 perm/sec)   p_kst 4.498978e-01   p_cons 1.362832e-04   p_joint 6.982301e-04

Joint ci ratio: 9.845931e-02	ci left: 6.634342e-04	ci right 7.325635e-04	k: 1583	n:2270000
Cons ci ratio: 2.226258e-01	ci left: 1.213681e-04	ci right 1.521776e-04	k: 309	n:2270000
KS ci ratio: 2.877033e-03	ci left: 4.492421e-01	ci right 4.505369e-01	k: 1021249	n:2270000
HTR3B   2270000 perm   2648 sec   (857 perm/sec)   p_kst 4.498894e-01   p_cons 1.361233e-04   p_joint 6.973568e-04

Joint ci ratio: 9.673315e-02	ci left: 6.849146e-04	ci right 7.549600e-04	k: 1640	n:2280000
Cons ci ratio: 2.219111e-01	ci left: 1.216642e-04	ci right 1.524361e-04	k: 311	n:2280000
KS ci ratio: 2.903119e-03	ci left: 4.436952e-01	ci right 4.449856e-01	k: 1013096	n:2280000
HTR3B   2280000 perm   2670 sec   (854 perm/sec)   p_kst 4.443404e-01   p_cons 1.364035e-04   p_joint 7.192982e-04

Joint ci ratio: 9.729862e-02	ci left: 6.738279e-04	ci right 7.431653e-04	k: 1621	n:2290000
Cons ci ratio: 2.215563e-01	ci left: 1.215453e-04	ci right 1.522313e-04	k: 312	n:2290000
KS ci ratio: 2.896803e-03	ci left: 4.436917e-01	ci right 4.449792e-01	k: 1017528	n:2290000
HTR3B   2290000 perm   2692 sec   (851 perm/sec)   p_kst 4.443354e-01   p_cons 1.362445e-04   p_joint 7.078603e-04

Joint ci ratio: 9.705954e-02	ci left: 6.742920e-04	ci right 7.434969e-04	k: 1629	n:2300000
Cons ci ratio: 2.208518e-01	ci left: 1.218383e-04	ci right 1.524871e-04	k: 314	n:2300000
KS ci ratio: 2.890408e-03	ci left: 4.437086e-01	ci right 4.449933e-01	k: 1022007	n:2300000
HTR3B   2300000 perm   2714 sec   (848 perm/sec)   p_kst 4.443509e-01   p_cons 1.365217e-04   p_joint 7.082609e-04

Joint ci ratio: 9.676311e-02	ci left: 6.755971e-04	ci right 7.447122e-04	k: 1639	n:2310000
Cons ci ratio: 2.208519e-01	ci left: 1.213108e-04	ci right 1.518270e-04	k: 314	n:2310000
KS ci ratio: 2.884217e-03	ci left: 4.436976e-01	ci right 4.449796e-01	k: 1026422	n:2310000
HTR3B   2310000 perm   2736 sec   (844 perm/sec)   p_kst 4.443385e-01   p_cons 1.359307e-04   p_joint 7.095238e-04

Joint ci ratio: 9.655727e-02	ci left: 6.756293e-04	ci right 7.445923e-04	k: 1646	n:2320000
Cons ci ratio: 2.205022e-01	ci left: 1.211951e-04	ci right 1.516274e-04	k: 315	n:2320000
KS ci ratio: 2.878003e-03	ci left: 4.436975e-01	ci right 4.449767e-01	k: 1030862	n:2320000
HTR3B   2320000 perm   2758 sec   (841 perm/sec)   p_kst 4.443371e-01   p_cons 1.357759e-04   p_joint 7.094828e-04

Joint ci ratio: 9.641108e-02	ci left: 6.748237e-04	ci right 7.435944e-04	k: 1651	n:2330000
Cons ci ratio: 2.201541e-01	ci left: 1.210805e-04	ci right 1.514295e-04	k: 316	n:2330000
KS ci ratio: 2.871858e-03	ci left: 4.436923e-01	ci right 4.449688e-01	k: 1035290	n:2330000
HTR3B   2330000 perm   2780 sec   (838 perm/sec)   p_kst 4.443305e-01   p_cons 1.356223e-04   p_joint 7.085837e-04

Joint ci ratio: 8.868800e-02	ci left: 7.971850e-04	ci right 8.715806e-04	k: 1951	n:2340000
Cons ci ratio: 2.198077e-01	ci left: 1.209668e-04	ci right 1.512332e-04	k: 317	n:2340000
KS ci ratio: 2.865751e-03	ci left: 4.436876e-01	ci right 4.449613e-01	k: 1039719	n:2340000
HTR3B   2340000 perm   2802 sec   (835 perm/sec)   p_kst 4.443244e-01   p_cons 1.354701e-04   p_joint 8.337607e-04

Joint ci ratio: 8.846166e-02	ci left: 7.979538e-04	ci right 8.722213e-04	k: 1961	n:2350000
Cons ci ratio: 2.187781e-01	ci left: 1.216586e-04	ci right 1.519362e-04	k: 320	n:2350000
KS ci ratio: 2.859520e-03	ci left: 4.437109e-01	ci right 4.449820e-01	k: 1044214	n:2350000
HTR3B   2350000 perm   2824 sec   (832 perm/sec)   p_kst 4.443464e-01   p_cons 1.361702e-04   p_joint 8.344681e-04

Joint ci ratio: 9.061353e-02	ci left: 7.564616e-04	ci right 8.286707e-04	k: 1869	n:2360000
Cons ci ratio: 2.187781e-01	ci left: 1.211431e-04	ci right 1.512925e-04	k: 320	n:2360000
KS ci ratio: 2.853578e-03	ci left: 4.436909e-01	ci right 4.449592e-01	k: 1048607	n:2360000
HTR3B   2360000 perm   2846 sec   (829 perm/sec)   p_kst 4.443250e-01   p_cons 1.355932e-04   p_joint 7.919492e-04

Joint ci ratio: 9.032410e-02	ci left: 7.582185e-04	ci right 8.303520e-04	k: 1881	n:2370000
Cons ci ratio: 2.170937e-01	ci left: 1.226265e-04	ci right 1.528788e-04	k: 325	n:2370000
KS ci ratio: 2.847591e-03	ci left: 4.436854e-01	ci right 4.449510e-01	k: 1053034	n:2370000
HTR3B   2370000 perm   2869 sec   (826 perm/sec)   p_kst 4.443181e-01   p_cons 1.371308e-04   p_joint 7.936709e-04

Joint ci ratio: 9.008505e-02	ci left: 7.591397e-04	ci right 8.311595e-04	k: 1891	n:2380000
Cons ci ratio: 2.164308e-01	ci left: 1.229060e-04	ci right 1.531223e-04	k: 327	n:2380000
KS ci ratio: 2.841577e-03	ci left: 4.436913e-01	ci right 4.449542e-01	k: 1057488	n:2380000
HTR3B   2380000 perm   2893 sec   (823 perm/sec)   p_kst 4.443227e-01   p_cons 1.373950e-04   p_joint 7.945378e-04

Joint ci ratio: 8.989520e-02	ci left: 7.592353e-04	ci right 8.311045e-04	k: 1899	n:2390000
Cons ci ratio: 2.154477e-01	ci left: 1.235791e-04	ci right 1.538046e-04	k: 330	n:2390000
KS ci ratio: 2.835708e-03	ci left: 4.436783e-01	ci right 4.449386e-01	k: 1061897	n:2390000
HTR3B   2390000 perm   2915 sec   (820 perm/sec)   p_kst 4.443084e-01   p_cons 1.380753e-04   p_joint 7.945607e-04

Joint ci ratio: 8.975363e-02	ci left: 7.585157e-04	ci right 8.301977e-04	k: 1905	n:2400000
Cons ci ratio: 2.154478e-01	ci left: 1.230642e-04	ci right 1.531638e-04	k: 330	n:2400000
KS ci ratio: 2.829789e-03	ci left: 4.436804e-01	ci right 4.449381e-01	k: 1066342	n:2400000
HTR3B   2400000 perm   2938 sec   (817 perm/sec)   p_kst 4.443092e-01   p_cons 1.375000e-04   p_joint 7.937500e-04

Joint ci ratio: 8.965967e-02	ci left: 7.569908e-04	ci right 8.284499e-04	k: 1909	n:2410000
Cons ci ratio: 2.144779e-01	ci left: 1.237313e-04	ci right 1.538400e-04	k: 333	n:2410000
KS ci ratio: 2.823941e-03	ci left: 4.436767e-01	ci right 4.449318e-01	k: 1070773	n:2410000
HTR3B   2410000 perm   2960 sec   (814 perm/sec)   p_kst 4.443041e-01   p_cons 1.381743e-04   p_joint 7.921162e-04

Joint ci ratio: 8.951921e-02	ci left: 7.562865e-04	ci right 8.275614e-04	k: 1915	n:2420000
Cons ci ratio: 2.141576e-01	ci left: 1.236111e-04	ci right 1.536396e-04	k: 334	n:2420000
KS ci ratio: 2.818105e-03	ci left: 4.436771e-01	ci right 4.449296e-01	k: 1075214	n:2420000
HTR3B   2420000 perm   2983 sec   (811 perm/sec)   p_kst 4.443033e-01   p_cons 1.380165e-04   p_joint 7.913223e-04

Joint ci ratio: 9.061456e-02	ci left: 7.346702e-04	ci right 8.048000e-04	k: 1869	n:2430000
Cons ci ratio: 2.132050e-01	ci left: 1.242709e-04	ci right 1.543079e-04	k: 337	n:2430000
KS ci ratio: 2.812277e-03	ci left: 4.436825e-01	ci right 4.449324e-01	k: 1079667	n:2430000
HTR3B   2430000 perm   3005 sec   (809 perm/sec)   p_kst 4.443074e-01   p_cons 1.386831e-04   p_joint 7.691358e-04

Joint ci ratio: 9.039727e-02	ci left: 7.352643e-04	ci right 8.052736e-04	k: 1878	n:2440000
Cons ci ratio: 2.125770e-01	ci left: 1.245376e-04	ci right 1.545388e-04	k: 339	n:2440000
KS ci ratio: 2.806646e-03	ci left: 4.436596e-01	ci right 4.449069e-01	k: 1084051	n:2440000
HTR3B   2440000 perm   3028 sec   (806 perm/sec)   p_kst 4.442832e-01   p_cons 1.389344e-04   p_joint 7.696721e-04

Joint ci ratio: 9.020544e-02	ci left: 7.354548e-04	ci right 8.053258e-04	k: 1886	n:2450000
Cons ci ratio: 2.122651e-01	ci left: 1.244157e-04	ci right 1.543379e-04	k: 340	n:2450000
KS ci ratio: 2.800796e-03	ci left: 4.436813e-01	ci right 4.449261e-01	k: 1088544	n:2450000
HTR3B   2450000 perm   3052 sec   (803 perm/sec)   p_kst 4.443037e-01   p_cons 1.387755e-04   p_joint 7.697959e-04

Joint ci ratio: 9.001482e-02	ci left: 7.356439e-04	ci right 8.053774e-04	k: 1894	n:2460000
Cons ci ratio: 2.119545e-01	ci left: 1.242948e-04	ci right 1.541385e-04	k: 341	n:2460000
KS ci ratio: 2.795082e-03	ci left: 4.436854e-01	ci right 4.449277e-01	k: 1092994	n:2460000
HTR3B   2460000 perm   3075 sec   (800 perm/sec)   p_kst 4.443065e-01   p_cons 1.386179e-04   p_joint 7.699187e-04

Joint ci ratio: 8.982541e-02	ci left: 7.358316e-04	ci right 8.054284e-04	k: 1902	n:2470000
Cons ci ratio: 2.116454e-01	ci left: 1.241750e-04	ci right 1.539408e-04	k: 342	n:2470000
KS ci ratio: 2.789425e-03	ci left: 4.436855e-01	ci right 4.449252e-01	k: 1097434	n:2470000
HTR3B   2470000 perm   3098 sec   (797 perm/sec)   p_kst 4.443053e-01   p_cons 1.384615e-04   p_joint 7.700405e-04

Joint ci ratio: 9.049428e-02	ci left: 7.218285e-04	ci right 7.906362e-04	k: 1874	n:2480000
Cons ci ratio: 2.110310e-01	ci left: 1.244381e-04	ci right 1.541691e-04	k: 344	n:2480000
KS ci ratio: 2.783853e-03	ci left: 4.436766e-01	ci right 4.449138e-01	k: 1101852	n:2480000
HTR3B   2480000 perm   3121 sec   (795 perm/sec)   p_kst 4.442952e-01   p_cons 1.387097e-04   p_joint 7.556452e-04

Joint ci ratio: 9.042205e-02	ci left: 7.201071e-04	ci right 7.886930e-04	k: 1877	n:2490000
Cons ci ratio: 2.110310e-01	ci left: 1.239383e-04	ci right 1.535500e-04	k: 344	n:2490000
KS ci ratio: 2.778193e-03	ci left: 4.436891e-01	ci right 4.449239e-01	k: 1106323	n:2490000
HTR3B   2490000 perm   3144 sec   (792 perm/sec)   p_kst 4.443064e-01   p_cons 1.381526e-04   p_joint 7.538153e-04

Joint ci ratio: 9.025401e-02	ci left: 7.199635e-04	ci right 7.884015e-04	k: 1884	n:2500000
Cons ci ratio: 2.104220e-01	ci left: 1.242004e-04	ci right 1.537779e-04	k: 346	n:2500000
KS ci ratio: 2.772755e-03	ci left: 4.436683e-01	ci right 4.449006e-01	k: 1110711	n:2500000
HTR3B   2500000 perm   3169 sec   (789 perm/sec)   p_kst 4.442844e-01   p_cons 1.384000e-04   p_joint 7.536000e-04

Joint ci ratio: 8.994429e-02	ci left: 7.221577e-04	ci right 7.905564e-04	k: 1897	n:2510000
Cons ci ratio: 2.092194e-01	ci left: 1.252154e-04	ci right 1.548425e-04	k: 350	n:2510000
KS ci ratio: 2.767128e-03	ci left: 4.436871e-01	ci right 4.449170e-01	k: 1115198	n:2510000
HTR3B   2510000 perm   3192 sec   (786 perm/sec)   p_kst 4.443020e-01   p_cons 1.394422e-04   p_joint 7.557769e-04

Joint ci ratio: 8.977890e-02	ci left: 7.220073e-04	ci right 7.902594e-04	k: 1904	n:2520000
Cons ci ratio: 2.089221e-01	ci left: 1.250946e-04	ci right 1.546456e-04	k: 351	n:2520000
KS ci ratio: 2.761632e-03	ci left: 4.436884e-01	ci right 4.449157e-01	k: 1119641	n:2520000
HTR3B   2520000 perm   3215 sec   (784 perm/sec)   p_kst 4.443020e-01   p_cons 1.392857e-04   p_joint 7.555556e-04

Joint ci ratio: 8.954414e-02	ci left: 7.230175e-04	ci right 7.911770e-04	k: 1914	n:2530000
Cons ci ratio: 2.077449e-01	ci left: 1.260987e-04	ci right 1.556978e-04	k: 355	n:2530000
KS ci ratio: 2.756253e-03	ci left: 4.436746e-01	ci right 4.448995e-01	k: 1124046	n:2530000
HTR3B   2530000 perm   3239 sec   (781 perm/sec)   p_kst 4.442870e-01   p_cons 1.403162e-04   p_joint 7.565217e-04

Joint ci ratio: 8.952088e-02	ci left: 7.205558e-04	ci right 7.884647e-04	k: 1915	n:2540000
Cons ci ratio: 2.077450e-01	ci left: 1.256023e-04	ci right 1.550848e-04	k: 355	n:2540000
KS ci ratio: 2.750683e-03	ci left: 4.437006e-01	ci right 4.449231e-01	k: 1128552	n:2540000
HTR3B   2540000 perm   3262 sec   (779 perm/sec)   p_kst 4.443118e-01   p_cons 1.397638e-04   p_joint 7.539370e-04

Joint ci ratio: 8.933457e-02	ci left: 7.207972e-04	ci right 7.885801e-04	k: 1923	n:2550000
Cons ci ratio: 2.074538e-01	ci left: 1.254815e-04	ci right 1.548891e-04	k: 356	n:2550000
KS ci ratio: 2.745256e-03	ci left: 4.437069e-01	ci right 4.449270e-01	k: 1133008	n:2550000
HTR3B   2550000 perm   3286 sec   (776 perm/sec)   p_kst 4.443169e-01   p_cons 1.396078e-04   p_joint 7.541176e-04

Joint ci ratio: 8.905720e-02	ci left: 7.225646e-04	ci right 7.902917e-04	k: 1935	n:2560000
Cons ci ratio: 2.068751e-01	ci left: 1.257320e-04	ci right 1.551058e-04	k: 358	n:2560000
KS ci ratio: 2.739827e-03	ci left: 4.437193e-01	ci right 4.449371e-01	k: 1137480	n:2560000
HTR3B   2560000 perm   3310 sec   (774 perm/sec)   p_kst 4.443281e-01   p_cons 1.398437e-04   p_joint 7.558594e-04

Joint ci ratio: 8.947456e-02	ci left: 7.129053e-04	ci right 7.800566e-04	k: 1917	n:2570000
Cons ci ratio: 2.065876e-01	ci left: 1.256118e-04	ci right 1.549115e-04	k: 359	n:2570000
KS ci ratio: 2.734334e-03	ci left: 4.437488e-01	ci right 4.449642e-01	k: 1141996	n:2570000
HTR3B   2570000 perm   3334 sec   (771 perm/sec)   p_kst 4.443564e-01   p_cons 1.396887e-04   p_joint 7.459144e-04

Joint ci ratio: 8.968551e-02	ci left: 7.067318e-04	ci right 7.734668e-04	k: 1908	n:2580000
Cons ci ratio: 2.060161e-01	ci left: 1.258600e-04	ci right 1.551263e-04	k: 361	n:2580000
KS ci ratio: 2.729284e-03	ci left: 4.437040e-01	ci right 4.449170e-01	k: 1146321	n:2580000
HTR3B   2580000 perm   3358 sec   (768 perm/sec)   p_kst 4.443105e-01   p_cons 1.399225e-04   p_joint 7.395349e-04

Joint ci ratio: 8.961520e-02	ci left: 7.051354e-04	ci right 7.716647e-04	k: 1911	n:2590000
Cons ci ratio: 2.054493e-01	ci left: 1.261065e-04	ci right 1.553392e-04	k: 363	n:2590000
KS ci ratio: 2.724147e-03	ci left: 4.436804e-01	ci right 4.448911e-01	k: 1150700	n:2590000
HTR3B   2590000 perm   3382 sec   (766 perm/sec)   p_kst 4.442857e-01   p_cons 1.401544e-04   p_joint 7.378378e-04

Joint ci ratio: 8.992177e-02	ci left: 6.975355e-04	ci right 7.635847e-04	k: 1898	n:2600000
Cons ci ratio: 2.051677e-01	ci left: 1.259863e-04	ci right 1.551461e-04	k: 364	n:2600000
KS ci ratio: 2.718979e-03	ci left: 4.436678e-01	ci right 4.448761e-01	k: 1155107	n:2600000
HTR3B   2600000 perm   3407 sec   (763 perm/sec)   p_kst 4.442719e-01   p_cons 1.400000e-04   p_joint 7.300000e-04

Joint ci ratio: 8.970941e-02	ci left: 6.982338e-04	ci right 7.641848e-04	k: 1907	n:2610000
Cons ci ratio: 2.043297e-01	ci left: 1.265941e-04	ci right 1.557600e-04	k: 367	n:2610000
KS ci ratio: 2.713914e-03	ci left: 4.436419e-01	ci right 4.448479e-01	k: 1159479	n:2610000
HTR3B   2610000 perm   3431 sec   (761 perm/sec)   p_kst 4.442448e-01   p_cons 1.406130e-04   p_joint 7.306513e-04

Joint ci ratio: 8.956871e-02	ci left: 6.978075e-04	ci right 7.636094e-04	k: 1913	n:2620000
Cons ci ratio: 2.040526e-01	ci left: 1.264731e-04	ci right 1.555666e-04	k: 368	n:2620000
KS ci ratio: 2.708921e-03	ci left: 4.436081e-01	ci right 4.448118e-01	k: 1163830	n:2620000
HTR3B   2620000 perm   3456 sec   (758 perm/sec)   p_kst 4.442099e-01   p_cons 1.404580e-04   p_joint 7.301527e-04

Joint ci ratio: 8.369214e-02	ci left: 7.985720e-04	ci right 8.686943e-04	k: 2191	n:2630000
Cons ci ratio: 2.032281e-01	ci left: 1.270748e-04	ci right 1.561739e-04	k: 371	n:2630000
KS ci ratio: 2.703723e-03	ci left: 4.436172e-01	ci right 4.448186e-01	k: 1168293	n:2630000
HTR3B   2630000 perm   3482 sec   (755 perm/sec)   p_kst 4.442179e-01   p_cons 1.410646e-04   p_joint 8.330798e-04

Joint ci ratio: 8.352084e-02	ci left: 7.988850e-04	ci right 8.688841e-04	k: 2200	n:2640000
Cons ci ratio: 2.029555e-01	ci left: 1.269529e-04	ci right 1.559804e-04	k: 372	n:2640000
KS ci ratio: 2.698550e-03	ci left: 4.436270e-01	ci right 4.448261e-01	k: 1172758	n:2640000
HTR3B   2640000 perm   3506 sec   (753 perm/sec)   p_kst 4.442265e-01   p_cons 1.409091e-04   p_joint 8.333333e-04

Joint ci ratio: 8.333172e-02	ci left: 7.995652e-04	ci right 8.694576e-04	k: 2210	n:2650000
Cons ci ratio: 2.029556e-01	ci left: 1.264739e-04	ci right 1.553918e-04	k: 372	n:2650000
KS ci ratio: 2.693452e-03	ci left: 4.436284e-01	ci right 4.448253e-01	k: 1177201	n:2650000
HTR3B   2650000 perm   3530 sec   (751 perm/sec)   p_kst 4.442268e-01   p_cons 1.403774e-04   p_joint 8.339623e-04

Joint ci ratio: 8.386502e-02	ci left: 7.862528e-04	ci right 8.554429e-04	k: 2182	n:2660000
Cons ci ratio: 2.021442e-01	ci left: 1.270690e-04	ci right 1.559925e-04	k: 375	n:2660000
KS ci ratio: 2.688500e-03	ci left: 4.436084e-01	ci right 4.448030e-01	k: 1181587	n:2660000
HTR3B   2660000 perm   3556 sec   (748 perm/sec)   p_kst 4.442056e-01   p_cons 1.409774e-04   p_joint 8.203008e-04

Joint ci ratio: 1.063079e-01	ci left: 4.819258e-04	ci right 5.363955e-04	k: 1358	n:2670000
Cons ci ratio: 2.021443e-01	ci left: 1.265931e-04	ci right 1.554083e-04	k: 375	n:2670000
KS ci ratio: 2.720518e-03	ci left: 4.368490e-01	ci right 4.380395e-01	k: 1167976	n:2670000
HTR3B   2670000 perm   3580 sec   (746 perm/sec)   p_kst 4.374442e-01   p_cons 1.404494e-04   p_joint 5.086142e-04

Joint ci ratio: 1.061908e-01	ci left: 4.812172e-04	ci right 5.355431e-04	k: 1361	n:2680000
Cons ci ratio: 2.021443e-01	ci left: 1.261207e-04	ci right 1.548284e-04	k: 375	n:2680000
KS ci ratio: 2.715468e-03	ci left: 4.368448e-01	ci right 4.380330e-01	k: 1172336	n:2680000
HTR3B   2680000 perm   3606 sec   (743 perm/sec)   p_kst 4.374388e-01   p_cons 1.399254e-04   p_joint 5.078358e-04

Joint ci ratio: 8.520400e-02	ci left: 7.527392e-04	ci right 8.200902e-04	k: 2114	n:2690000
Cons ci ratio: 2.101204e-01	ci left: 1.157800e-04	ci right 1.433077e-04	k: 347	n:2690000
KS ci ratio: 2.710431e-03	ci left: 4.368431e-01	ci right 4.380291e-01	k: 1176703	n:2690000
HTR3B   2690000 perm   3631 sec   (741 perm/sec)   p_kst 4.374361e-01   p_cons 1.289963e-04   p_joint 7.858736e-04

Joint ci ratio: 8.504331e-02	ci left: 7.528511e-04	ci right 8.200789e-04	k: 2122	n:2700000
Cons ci ratio: 2.098192e-01	ci left: 1.157020e-04	ci right 1.431667e-04	k: 348	n:2700000
KS ci ratio: 2.705354e-03	ci left: 4.368537e-01	ci right 4.380375e-01	k: 1181103	n:2700000
HTR3B   2700000 perm   3656 sec   (738 perm/sec)   p_kst 4.374456e-01   p_cons 1.288889e-04   p_joint 7.859259e-04

Joint ci ratio: 8.484370e-02	ci left: 7.536847e-04	ci right 8.208211e-04	k: 2132	n:2710000
Cons ci ratio: 2.086269e-01	ci left: 1.166738e-04	ci right 1.441917e-04	k: 352	n:2710000
KS ci ratio: 2.700329e-03	ci left: 4.368602e-01	ci right 4.380418e-01	k: 1185492	n:2710000
HTR3B   2710000 perm   3681 sec   (736 perm/sec)   p_kst 4.374509e-01   p_cons 1.298893e-04   p_joint 7.867159e-04

Joint ci ratio: 8.474447e-02	ci left: 7.527131e-04	ci right 8.196806e-04	k: 2137	n:2720000
Cons ci ratio: 2.083321e-01	ci left: 1.165933e-04	ci right 1.440484e-04	k: 353	n:2720000
KS ci ratio: 2.695579e-03	ci left: 4.368214e-01	ci right 4.380008e-01	k: 1189758	n:2720000
HTR3B   2720000 perm   3706 sec   (734 perm/sec)   p_kst 4.374110e-01   p_cons 1.297794e-04   p_joint 7.856618e-04

Joint ci ratio: 8.464560e-02	ci left: 7.517486e-04	ci right 8.185484e-04	k: 2142	n:2730000
Cons ci ratio: 2.080384e-01	ci left: 1.165134e-04	ci right 1.439061e-04	k: 354	n:2730000
KS ci ratio: 2.690662e-03	ci left: 4.368180e-01	ci right 4.379953e-01	k: 1194120	n:2730000
HTR3B   2730000 perm   3731 sec   (732 perm/sec)   p_kst 4.374066e-01   p_cons 1.296703e-04   p_joint 7.846154e-04

Joint ci ratio: 8.440953e-02	ci left: 7.532920e-04	ci right 8.200331e-04	k: 2154	n:2740000
Cons ci ratio: 2.071649e-01	ci left: 1.171262e-04	ci right 1.445326e-04	k: 357	n:2740000
KS ci ratio: 2.685865e-03	ci left: 4.367976e-01	ci right 4.379727e-01	k: 1198435	n:2740000
HTR3B   2740000 perm   3756 sec   (729 perm/sec)   p_kst 4.373850e-01   p_cons 1.302920e-04   p_joint 7.861314e-04

Joint ci ratio: 8.492391e-02	ci left: 7.412982e-04	ci right 8.073967e-04	k: 2128	n:2750000
Cons ci ratio: 2.065886e-01	ci left: 1.173898e-04	ci right 1.447719e-04	k: 359	n:2750000
KS ci ratio: 2.680931e-03	ci left: 4.368070e-01	ci right 4.379800e-01	k: 1202832	n:2750000
HTR3B   2750000 perm   3782 sec   (727 perm/sec)   p_kst 4.373935e-01   p_cons 1.305455e-04   p_joint 7.738182e-04

Joint ci ratio: 8.478465e-02	ci left: 7.410947e-04	ci right 8.070614e-04	k: 2135	n:2760000
Cons ci ratio: 2.060171e-01	ci left: 1.176517e-04	ci right 1.450094e-04	k: 361	n:2760000
KS ci ratio: 2.676131e-03	ci left: 4.367969e-01	ci right 4.379677e-01	k: 1207175	n:2760000
HTR3B   2760000 perm   3807 sec   (725 perm/sec)   p_kst 4.373822e-01   p_cons 1.307971e-04   p_joint 7.735507e-04

Joint ci ratio: 8.510436e-02	ci left: 7.327657e-04	ci right 7.982491e-04	k: 2119	n:2770000
Cons ci ratio: 2.048881e-01	ci left: 1.185968e-04	ci right 1.460041e-04	k: 365	n:2770000
KS ci ratio: 2.671441e-03	ci left: 4.367713e-01	ci right 4.379400e-01	k: 1211475	n:2770000
HTR3B   2770000 perm   3834 sec   (723 perm/sec)   p_kst 4.373556e-01   p_cons 1.317690e-04   p_joint 7.649819e-04

Joint ci ratio: 8.496421e-02	ci left: 7.325943e-04	ci right 7.979493e-04	k: 2126	n:2780000
Cons ci ratio: 2.048882e-01	ci left: 1.181701e-04	ci right 1.454789e-04	k: 365	n:2780000
KS ci ratio: 2.666567e-03	ci left: 4.367844e-01	ci right 4.379510e-01	k: 1215882	n:2780000
HTR3B   2780000 perm   3860 sec   (720 perm/sec)   p_kst 4.373676e-01   p_cons 1.312950e-04   p_joint 7.647482e-04

Joint ci ratio: 8.474531e-02	ci left: 7.338275e-04	ci right 7.991155e-04	k: 2137	n:2790000
Cons ci ratio: 2.037775e-01	ci left: 1.191069e-04	ci right 1.464644e-04	k: 369	n:2790000
KS ci ratio: 2.661651e-03	ci left: 4.368099e-01	ci right 4.379744e-01	k: 1220324	n:2790000
HTR3B   2790000 perm   3886 sec   (718 perm/sec)   p_kst 4.373921e-01   p_cons 1.322581e-04   p_joint 7.659498e-04

Joint ci ratio: 8.460693e-02	ci left: 7.336538e-04	ci right 7.988144e-04	k: 2144	n:2800000
Cons ci ratio: 2.035027e-01	ci left: 1.190205e-04	ci right 1.463167e-04	k: 370	n:2800000
KS ci ratio: 2.656911e-03	ci left: 4.368078e-01	ci right 4.379702e-01	k: 1224689	n:2800000
HTR3B   2800000 perm   3913 sec   (716 perm/sec)   p_kst 4.373889e-01   p_cons 1.321429e-04   p_joint 7.657143e-04

Joint ci ratio: 8.464655e-02	ci left: 7.303462e-04	ci right 7.952449e-04	k: 2142	n:2810000
Cons ci ratio: 2.024144e-01	ci left: 1.199481e-04	ci right 1.472917e-04	k: 374	n:2810000
KS ci ratio: 2.652091e-03	ci left: 4.368252e-01	ci right 4.379856e-01	k: 1229109	n:2810000
HTR3B   2810000 perm   3940 sec   (713 perm/sec)   p_kst 4.374053e-01   p_cons 1.330961e-04   p_joint 7.622776e-04

Joint ci ratio: 8.444970e-02	ci left: 7.312274e-04	ci right 7.960460e-04	k: 2152	n:2820000
Cons ci ratio: 2.024144e-01	ci left: 1.195227e-04	ci right 1.467694e-04	k: 374	n:2820000
KS ci ratio: 2.647444e-03	ci left: 4.368152e-01	ci right 4.379735e-01	k: 1233452	n:2820000
HTR3B   2820000 perm   3966 sec   (711 perm/sec)   p_kst 4.373943e-01   p_cons 1.326241e-04   p_joint 7.631206e-04

Joint ci ratio: 8.472594e-02	ci left: 7.238011e-04	ci right 7.881816e-04	k: 2138	n:2830000
Cons ci ratio: 2.018768e-01	ci left: 1.197713e-04	ci right 1.469932e-04	k: 376	n:2830000
KS ci ratio: 2.642834e-03	ci left: 4.368029e-01	ci right 4.379591e-01	k: 1237788	n:2830000
HTR3B   2830000 perm   3993 sec   (709 perm/sec)   p_kst 4.373809e-01   p_cons 1.328622e-04   p_joint 7.554770e-04

Joint ci ratio: 8.458766e-02	ci left: 7.236651e-04	ci right 7.879233e-04	k: 2145	n:2840000
Cons ci ratio: 2.013434e-01	ci left: 1.200183e-04	ci right 1.472154e-04	k: 378	n:2840000
KS ci ratio: 2.638075e-03	ci left: 4.368230e-01	ci right 4.379772e-01	k: 1242216	n:2840000
HTR3B   2840000 perm   4019 sec   (707 perm/sec)   p_kst 4.374000e-01   p_cons 1.330986e-04   p_joint 7.552817e-04

Joint ci ratio: 8.482544e-02	ci left: 7.170045e-04	ci right 7.808590e-04	k: 2133	n:2850000
Cons ci ratio: 2.008142e-01	ci left: 1.202636e-04	ci right 1.474359e-04	k: 380	n:2850000
KS ci ratio: 2.633443e-03	ci left: 4.368240e-01	ci right 4.379762e-01	k: 1246590	n:2850000
HTR3B   2850000 perm   4046 sec   (704 perm/sec)   p_kst 4.374000e-01   p_cons 1.333333e-04   p_joint 7.484211e-04

Joint ci ratio: 8.464711e-02	ci left: 7.175777e-04	ci right 7.813423e-04	k: 2142	n:2860000
Cons ci ratio: 2.005512e-01	ci left: 1.201752e-04	ci right 1.472875e-04	k: 381	n:2860000
KS ci ratio: 2.628917e-03	ci left: 4.368096e-01	ci right 4.379598e-01	k: 1250920	n:2860000
HTR3B   2860000 perm   4071 sec   (702 perm/sec)   p_kst 4.373846e-01   p_cons 1.332168e-04   p_joint 7.489510e-04

Joint ci ratio: 8.446990e-02	ci left: 7.181470e-04	ci right 7.818220e-04	k: 2151	n:2870000
Cons ci ratio: 2.002892e-01	ci left: 1.200874e-04	ci right 1.471402e-04	k: 382	n:2870000
KS ci ratio: 2.624325e-03	ci left: 4.368120e-01	ci right 4.379602e-01	k: 1255298	n:2870000
HTR3B   2870000 perm   4098 sec   (700 perm/sec)   p_kst 4.373861e-01   p_cons 1.331010e-04   p_joint 7.494774e-04

Joint ci ratio: 8.433286e-02	ci left: 7.180327e-04	ci right 7.815892e-04	k: 2158	n:2880000
Cons ci ratio: 1.997683e-01	ci left: 1.203301e-04	ci right 1.473585e-04	k: 384	n:2880000
KS ci ratio: 2.619785e-03	ci left: 4.368093e-01	ci right 4.379554e-01	k: 1259661	n:2880000
HTR3B   2880000 perm   4125 sec   (698 perm/sec)   p_kst 4.373823e-01   p_cons 1.333333e-04   p_joint 7.493056e-04

Joint ci ratio: 8.429391e-02	ci left: 7.162256e-04	ci right 7.795914e-04	k: 2160	n:2890000
Cons ci ratio: 1.997684e-01	ci left: 1.199137e-04	ci right 1.468486e-04	k: 384	n:2890000
KS ci ratio: 2.615149e-03	ci left: 4.368290e-01	ci right 4.379732e-01	k: 1264089	n:2890000
HTR3B   2890000 perm   4152 sec   (696 perm/sec)   p_kst 4.374010e-01   p_cons 1.328720e-04   p_joint 7.474048e-04

Joint ci ratio: 8.415772e-02	ci left: 7.161188e-04	ci right 7.793678e-04	k: 2167	n:2900000
Cons ci ratio: 1.997684e-01	ci left: 1.195002e-04	ci right 1.463423e-04	k: 384	n:2900000
KS ci ratio: 2.610389e-03	ci left: 4.368765e-01	ci right 4.380188e-01	k: 1268598	n:2900000
HTR3B   2900000 perm   4179 sec   (694 perm/sec)   p_kst 4.374476e-01   p_cons 1.324138e-04   p_joint 7.472414e-04

Joint ci ratio: 8.494569e-02	ci left: 7.002026e-04	ci right 7.626535e-04	k: 2127	n:2910000
Cons ci ratio: 1.989945e-01	ci left: 1.200690e-04	ci right 1.469217e-04	k: 387	n:2910000
KS ci ratio: 2.605837e-03	ci left: 4.368894e-01	ci right 4.380296e-01	k: 1273007	n:2910000
HTR3B   2910000 perm   4206 sec   (692 perm/sec)   p_kst 4.374595e-01   p_cons 1.329897e-04   p_joint 7.309278e-04

Joint ci ratio: 8.484610e-02	ci left: 6.994806e-04	ci right 7.617904e-04	k: 2132	n:2920000
Cons ci ratio: 1.987386e-01	ci left: 1.199832e-04	ci right 1.467780e-04	k: 388	n:2920000
KS ci ratio: 2.601449e-03	ci left: 4.368758e-01	ci right 4.380141e-01	k: 1277339	n:2920000
HTR3B   2920000 perm   4233 sec   (690 perm/sec)   p_kst 4.374449e-01   p_cons 1.328767e-04   p_joint 7.301370e-04

Joint ci ratio: 8.590050e-02	ci left: 6.797244e-04	ci right 7.410645e-04	k: 2080	n:2930000
Cons ci ratio: 1.982297e-01	ci left: 1.202224e-04	ci right 1.469935e-04	k: 390	n:2930000
KS ci ratio: 2.597077e-03	ci left: 4.368633e-01	ci right 4.379996e-01	k: 1281674	n:2930000
HTR3B   2930000 perm   4260 sec   (688 perm/sec)   p_kst 4.374314e-01   p_cons 1.331058e-04   p_joint 7.098976e-04

Joint ci ratio: 8.573584e-02	ci left: 6.800751e-04	ci right 7.413234e-04	k: 2088	n:2940000
Cons ci ratio: 1.979767e-01	ci left: 1.201368e-04	ci right 1.468505e-04	k: 391	n:2940000
KS ci ratio: 2.592610e-03	ci left: 4.368730e-01	ci right 4.380074e-01	k: 1286074	n:2940000
HTR3B   2940000 perm   4287 sec   (686 perm/sec)   p_kst 4.374401e-01   p_cons 1.329932e-04   p_joint 7.102041e-04

Joint ci ratio: 8.551095e-02	ci left: 6.814188e-04	ci right 7.426190e-04	k: 2099	n:2950000
Cons ci ratio: 1.979767e-01	ci left: 1.197295e-04	ci right 1.463528e-04	k: 391	n:2950000
KS ci ratio: 2.588182e-03	ci left: 4.368796e-01	ci right 4.380121e-01	k: 1290465	n:2950000
HTR3B   2950000 perm   4314 sec   (684 perm/sec)   p_kst 4.374458e-01   p_cons 1.325424e-04   p_joint 7.115254e-04

Joint ci ratio: 8.538906e-02	ci left: 6.811004e-04	ci right 7.421805e-04	k: 2105	n:2960000
Cons ci ratio: 1.979768e-01	ci left: 1.193250e-04	ci right 1.458583e-04	k: 391	n:2960000
KS ci ratio: 2.583866e-03	ci left: 4.368692e-01	ci right 4.379998e-01	k: 1294806	n:2960000
HTR3B   2960000 perm   4341 sec   (682 perm/sec)   p_kst 4.374345e-01   p_cons 1.320946e-04   p_joint 7.111486e-04

Joint ci ratio: 8.524751e-02	ci left: 6.811137e-04	ci right 7.420888e-04	k: 2112	n:2970000
Cons ci ratio: 1.977247e-01	ci left: 1.192433e-04	ci right 1.457206e-04	k: 392	n:2970000
KS ci ratio: 2.579467e-03	ci left: 4.368788e-01	ci right 4.380075e-01	k: 1299206	n:2970000
HTR3B   2970000 perm   4369 sec   (680 perm/sec)   p_kst 4.374431e-01   p_cons 1.319865e-04   p_joint 7.111111e-04

Joint ci ratio: 8.516698e-02	ci left: 6.801418e-04	ci right 7.409694e-04	k: 2116	n:2980000
Cons ci ratio: 1.977248e-01	ci left: 1.188431e-04	ci right 1.452316e-04	k: 392	n:2980000
KS ci ratio: 2.575215e-03	ci left: 4.368645e-01	ci right 4.379913e-01	k: 1303535	n:2980000
HTR3B   2980000 perm   4397 sec   (678 perm/sec)   p_kst 4.374279e-01   p_cons 1.315436e-04   p_joint 7.100671e-04

Joint ci ratio: 8.504656e-02	ci left: 6.798310e-04	ci right 7.405407e-04	k: 2122	n:2990000
Cons ci ratio: 1.977248e-01	ci left: 1.184457e-04	ci right 1.447459e-04	k: 392	n:2990000
KS ci ratio: 2.571058e-03	ci left: 4.368363e-01	ci right 4.379612e-01	k: 1307822	n:2990000
HTR3B   2990000 perm   4425 sec   (676 perm/sec)   p_kst 4.373987e-01   p_cons 1.311037e-04   p_joint 7.096990e-04

Joint ci ratio: 8.488676e-02	ci left: 6.801749e-04	ci right 7.407955e-04	k: 2130	n:3000000
Cons ci ratio: 1.974737e-01	ci left: 1.183677e-04	ci right 1.446132e-04	k: 393	n:3000000
KS ci ratio: 2.566741e-03	ci left: 4.368426e-01	ci right 4.379656e-01	k: 1312212	n:3000000
HTR3B   3000000 perm   4452 sec   (674 perm/sec)   p_kst 4.374040e-01   p_cons 1.310000e-04   p_joint 7.100000e-04

Joint ci ratio: 8.464869e-02	ci left: 6.818175e-04	ci right 7.424056e-04	k: 2142	n:3010000
Cons ci ratio: 1.974738e-01	ci left: 1.179744e-04	ci right 1.441327e-04	k: 393	n:3010000
KS ci ratio: 2.562357e-03	ci left: 4.368661e-01	ci right 4.379872e-01	k: 1316654	n:3010000
HTR3B   3010000 perm   4480 sec   (672 perm/sec)   p_kst 4.374266e-01   p_cons 1.305648e-04   p_joint 7.116279e-04

Joint ci ratio: 8.559327e-02	ci left: 6.643279e-04	ci right 7.240535e-04	k: 2095	n:3020000
Cons ci ratio: 1.972237e-01	ci left: 1.178986e-04	ci right 1.440029e-04	k: 394	n:3020000
KS ci ratio: 2.558079e-03	ci left: 4.368732e-01	ci right 4.379925e-01	k: 1321047	n:3020000
HTR3B   3020000 perm   4508 sec   (670 perm/sec)   p_kst 4.374328e-01   p_cons 1.304636e-04   p_joint 6.937086e-04

Joint ci ratio: 8.549138e-02	ci left: 6.637502e-04	ci right 7.233493e-04	k: 2100	n:3030000
Cons ci ratio: 1.964789e-01	ci left: 1.184508e-04	ci right 1.445665e-04	k: 397	n:3030000
KS ci ratio: 2.553786e-03	ci left: 4.368872e-01	ci right 4.380047e-01	k: 1325461	n:3030000
HTR3B   3030000 perm   4535 sec   (668 perm/sec)   p_kst 4.374459e-01   p_cons 1.310231e-04   p_joint 6.930693e-04

Joint ci ratio: 8.619222e-02	ci left: 6.506225e-04	ci right 7.095458e-04	k: 2066	n:3040000
Cons ci ratio: 1.962325e-01	ci left: 1.183739e-04	ci right 1.444361e-04	k: 398	n:3040000
KS ci ratio: 2.549624e-03	ci left: 4.368801e-01	ci right 4.379957e-01	k: 1329811	n:3040000
HTR3B   3040000 perm   4563 sec   (666 perm/sec)   p_kst 4.374378e-01   p_cons 1.309211e-04   p_joint 6.796053e-04

Joint ci ratio: 8.608819e-02	ci left: 6.500934e-04	ci right 7.088941e-04	k: 2071	n:3050000
Cons ci ratio: 1.959871e-01	ci left: 1.182976e-04	ci right 1.443065e-04	k: 399	n:3050000
KS ci ratio: 2.545246e-03	ci left: 4.369186e-01	ci right 4.380324e-01	k: 1334300	n:3050000
HTR3B   3050000 perm   4591 sec   (664 perm/sec)   p_kst 4.374754e-01   p_cons 1.308197e-04   p_joint 6.790164e-04

Joint ci ratio: 8.596382e-02	ci left: 6.498875e-04	ci right 7.085804e-04	k: 2077	n:3060000
Cons ci ratio: 1.957426e-01	ci left: 1.182217e-04	ci right 1.441777e-04	k: 400	n:3060000
KS ci ratio: 2.541149e-03	ci left: 4.369068e-01	ci right 4.380188e-01	k: 1338636	n:3060000
HTR3B   3060000 perm   4620 sec   (662 perm/sec)   p_kst 4.374627e-01   p_cons 1.307190e-04   p_joint 6.787582e-04

Joint ci ratio: 8.575768e-02	ci left: 6.509580e-04	ci right 7.095996e-04	k: 2087	n:3070000
Cons ci ratio: 1.947735e-01	ci left: 1.190759e-04	ci right 1.450746e-04	k: 404	n:3070000
KS ci ratio: 2.536919e-03	ci left: 4.369248e-01	ci right 4.380349e-01	k: 1343063	n:3070000
HTR3B   3070000 perm   4648 sec   (660 perm/sec)   p_kst 4.374798e-01   p_cons 1.315961e-04   p_joint 6.798046e-04

Joint ci ratio: 8.636000e-02	ci left: 6.396314e-04	ci right 6.976777e-04	k: 2058	n:3080000
Cons ci ratio: 1.945335e-01	ci left: 1.189981e-04	ci right 1.449440e-04	k: 405	n:3080000
KS ci ratio: 2.532677e-03	ci left: 4.369491e-01	ci right 4.380575e-01	k: 1347510	n:3080000
HTR3B   3080000 perm   4677 sec   (658 perm/sec)   p_kst 4.375032e-01   p_cons 1.314935e-04   p_joint 6.681818e-04

Joint ci ratio: 8.625535e-02	ci left: 6.391446e-04	ci right 6.970729e-04	k: 2063	n:3090000
Cons ci ratio: 1.942944e-01	ci left: 1.189209e-04	ci right 1.448143e-04	k: 406	n:3090000
KS ci ratio: 2.528469e-03	ci left: 4.369707e-01	ci right 4.380773e-01	k: 1351949	n:3090000
HTR3B   3090000 perm   4705 sec   (657 perm/sec)   p_kst 4.375239e-01   p_cons 1.313916e-04   p_joint 6.676375e-04

Joint ci ratio: 8.604711e-02	ci left: 6.402391e-04	ci right 6.981195e-04	k: 2073	n:3100000
Cons ci ratio: 1.940561e-01	ci left: 1.188442e-04	ci right 1.446854e-04	k: 407	n:3100000
KS ci ratio: 2.524443e-03	ci left: 4.369609e-01	ci right 4.380657e-01	k: 1356291	n:3100000
HTR3B   3100000 perm   4734 sec   (655 perm/sec)   p_kst 4.375132e-01   p_cons 1.312903e-04   p_joint 6.687097e-04

Joint ci ratio: 8.598500e-02	ci left: 6.391243e-04	ci right 6.968602e-04	k: 2076	n:3110000
Cons ci ratio: 1.935822e-01	ci left: 1.190739e-04	ci right 1.448944e-04	k: 409	n:3110000
KS ci ratio: 2.520470e-03	ci left: 4.369444e-01	ci right 4.380474e-01	k: 1360612	n:3110000
HTR3B   3110000 perm   4763 sec   (653 perm/sec)   p_kst 4.374958e-01   p_cons 1.315113e-04   p_joint 6.675241e-04

Joint ci ratio: 8.577870e-02	ci left: 6.402122e-04	ci right 6.979006e-04	k: 2086	n:3120000
Cons ci ratio: 1.926447e-01	ci left: 1.199124e-04	ci right 1.457740e-04	k: 413	n:3120000
KS ci ratio: 2.516421e-03	ci left: 4.369466e-01	ci right 4.380478e-01	k: 1364991	n:3120000
HTR3B   3120000 perm   4792 sec   (651 perm/sec)   p_kst 4.374971e-01   p_cons 1.323718e-04   p_joint 6.685897e-04

Joint ci ratio: 8.559431e-02	ci left: 6.409806e-04	ci right 6.986079e-04	k: 2095	n:3130000
Cons ci ratio: 1.921810e-01	ci left: 1.201374e-04	ci right 1.459780e-04	k: 415	n:3130000
KS ci ratio: 2.512264e-03	ci left: 4.369736e-01	ci right 4.380731e-01	k: 1369448	n:3130000
HTR3B   3130000 perm   4821 sec   (649 perm/sec)   p_kst 4.375233e-01   p_cons 1.325879e-04   p_joint 6.693291e-04

Joint ci ratio: 8.539081e-02	ci left: 6.420559e-04	ci right 6.996358e-04	k: 2105	n:3140000
Cons ci ratio: 1.919504e-01	ci left: 1.200580e-04	ci right 1.458469e-04	k: 416	n:3140000
KS ci ratio: 2.508280e-03	ci left: 4.369706e-01	ci right 4.380683e-01	k: 1373811	n:3140000
HTR3B   3140000 perm   4850 sec   (647 perm/sec)   p_kst 4.375194e-01   p_cons 1.324841e-04   p_joint 6.703822e-04

Joint ci ratio: 8.528965e-02	ci left: 6.415710e-04	ci right 6.990359e-04	k: 2110	n:3150000
Cons ci ratio: 1.919505e-01	ci left: 1.196769e-04	ci right 1.453838e-04	k: 416	n:3150000
KS ci ratio: 2.504215e-03	ci left: 4.369873e-01	ci right 4.380833e-01	k: 1378236	n:3150000
HTR3B   3150000 perm   4881 sec   (645 perm/sec)   p_kst 4.375352e-01   p_cons 1.320635e-04   p_joint 6.698413e-04

Joint ci ratio: 8.600617e-02	ci left: 6.287018e-04	ci right 6.855108e-04	k: 2075	n:3160000
Cons ci ratio: 1.917208e-01	ci left: 1.195994e-04	ci right 1.452554e-04	k: 417	n:3160000
KS ci ratio: 2.500361e-03	ci left: 4.369662e-01	ci right 4.380605e-01	k: 1382542	n:3160000
HTR3B   3160000 perm   4910 sec   (644 perm/sec)   p_kst 4.375133e-01   p_cons 1.319620e-04   p_joint 6.566456e-04

Joint ci ratio: 8.579973e-02	ci left: 6.298054e-04	ci right 6.865706e-04	k: 2085	n:3170000
Cons ci ratio: 1.914918e-01	ci left: 1.195224e-04	ci right 1.451278e-04	k: 418	n:3170000
KS ci ratio: 2.496357e-03	ci left: 4.369784e-01	ci right 4.380709e-01	k: 1386953	n:3170000
HTR3B   3170000 perm   4939 sec   (642 perm/sec)   p_kst 4.375246e-01   p_cons 1.318612e-04   p_joint 6.577287e-04

Joint ci ratio: 8.557434e-02	ci left: 6.312099e-04	ci right 6.879448e-04	k: 2096	n:3180000
Cons ci ratio: 1.908099e-01	ci left: 1.200448e-04	ci right 1.456599e-04	k: 421	n:3180000
KS ci ratio: 2.492342e-03	ci left: 4.369965e-01	ci right 4.380873e-01	k: 1391383	n:3180000
HTR3B   3180000 perm   4968 sec   (640 perm/sec)   p_kst 4.375418e-01   p_cons 1.323899e-04   p_joint 6.591195e-04

Joint ci ratio: 8.553362e-02	ci left: 6.298447e-04	ci right 6.864286e-04	k: 2098	n:3190000
Cons ci ratio: 1.908100e-01	ci left: 1.196685e-04	ci right 1.452033e-04	k: 421	n:3190000
KS ci ratio: 2.488452e-03	ci left: 4.369934e-01	ci right 4.380825e-01	k: 1395746	n:3190000
HTR3B   3190000 perm   4998 sec   (638 perm/sec)   p_kst 4.375379e-01   p_cons 1.319749e-04   p_joint 6.576803e-04

Joint ci ratio: 8.539135e-02	ci left: 6.300172e-04	ci right 6.865178e-04	k: 2105	n:3200000
Cons ci ratio: 1.908100e-01	ci left: 1.192945e-04	ci right 1.447495e-04	k: 421	n:3200000
KS ci ratio: 2.484486e-03	ci left: 4.370092e-01	ci right 4.380966e-01	k: 1400169	n:3200000
HTR3B   3200000 perm   5028 sec   (636 perm/sec)   p_kst 4.375528e-01   p_cons 1.315625e-04   p_joint 6.578125e-04

Joint ci ratio: 8.529018e-02	ci left: 6.295789e-04	ci right 6.859700e-04	k: 2110	n:3210000
Cons ci ratio: 1.905843e-01	ci left: 1.192196e-04	ci right 1.446249e-04	k: 422	n:3210000
KS ci ratio: 2.480698e-03	ci left: 4.369930e-01	ci right 4.380787e-01	k: 1404490	n:3210000
HTR3B   3210000 perm   5057 sec   (635 perm/sec)   p_kst 4.375358e-01   p_cons 1.314642e-04   p_joint 6.573209e-04

Joint ci ratio: 8.516924e-02	ci left: 6.294473e-04	ci right 6.857427e-04	k: 2116	n:3220000
Cons ci ratio: 1.905844e-01	ci left: 1.188493e-04	ci right 1.441758e-04	k: 422	n:3220000
KS ci ratio: 2.476828e-03	ci left: 4.369969e-01	ci right 4.380809e-01	k: 1408875	n:3220000
HTR3B   3220000 perm   5087 sec   (633 perm/sec)   p_kst 4.375388e-01   p_cons 1.310559e-04   p_joint 6.571429e-04

Joint ci ratio: 8.508892e-02	ci left: 6.287106e-04	ci right 6.848844e-04	k: 2120	n:3230000
Cons ci ratio: 1.905844e-01	ci left: 1.184814e-04	ci right 1.437294e-04	k: 422	n:3230000
KS ci ratio: 2.472887e-03	ci left: 4.370183e-01	ci right 4.381007e-01	k: 1413317	n:3230000
HTR3B   3230000 perm   5117 sec   (631 perm/sec)   p_kst 4.375594e-01   p_cons 1.306502e-04   p_joint 6.563467e-04

Joint ci ratio: 8.498883e-02	ci left: 6.282805e-04	ci right 6.843466e-04	k: 2125	n:3240000
Cons ci ratio: 1.901354e-01	ci left: 1.187035e-04	ci right 1.439325e-04	k: 424	n:3240000
KS ci ratio: 2.469221e-03	ci left: 4.369887e-01	ci right 4.380694e-01	k: 1417594	n:3240000
HTR3B   3240000 perm   5147 sec   (629 perm/sec)   p_kst 4.375290e-01   p_cons 1.308642e-04   p_joint 6.558642e-04

Joint ci ratio: 8.476975e-02	ci left: 6.296601e-04	ci right 6.856973e-04	k: 2136	n:3250000
Cons ci ratio: 1.890267e-01	ci left: 1.198038e-04	ci right 1.451010e-04	k: 429	n:3250000
KS ci ratio: 2.465307e-03	ci left: 4.370119e-01	ci right 4.380909e-01	k: 1422042	n:3250000
HTR3B   3250000 perm   5177 sec   (628 perm/sec)   p_kst 4.375514e-01   p_cons 1.320000e-04   p_joint 6.572308e-04

Joint ci ratio: 8.467078e-02	ci left: 6.292299e-04	ci right 6.851602e-04	k: 2141	n:3260000
Cons ci ratio: 1.888072e-01	ci left: 1.197285e-04	ci right 1.449772e-04	k: 430	n:3260000
KS ci ratio: 2.461645e-03	ci left: 4.369884e-01	ci right 4.380657e-01	k: 1426338	n:3260000
HTR3B   3260000 perm   5207 sec   (626 perm/sec)   p_kst 4.375270e-01   p_cons 1.319018e-04   p_joint 6.567485e-04

Joint ci ratio: 8.494911e-02	ci left: 6.231150e-04	ci right 6.786929e-04	k: 2127	n:3270000
Cons ci ratio: 1.881535e-01	ci left: 1.202365e-04	ci right 1.454945e-04	k: 433	n:3270000
KS ci ratio: 2.457839e-03	ci left: 4.369971e-01	ci right 4.380728e-01	k: 1430739	n:3270000
HTR3B   3270000 perm   5237 sec   (624 perm/sec)   p_kst 4.375349e-01   p_cons 1.324159e-04   p_joint 6.504587e-04

Joint ci ratio: 8.477001e-02	ci left: 6.239009e-04	ci right 6.794258e-04	k: 2136	n:3280000
Cons ci ratio: 1.875065e-01	ci left: 1.207416e-04	ci right 1.460085e-04	k: 436	n:3280000
KS ci ratio: 2.454105e-03	ci left: 4.369947e-01	ci right 4.380688e-01	k: 1435104	n:3280000
HTR3B   3280000 perm   5266 sec   (623 perm/sec)   p_kst 4.375317e-01   p_cons 1.329268e-04   p_joint 6.512195e-04

Joint ci ratio: 7.910186e-02	ci left: 7.163866e-04	ci right 7.756832e-04	k: 2453	n:3290000
Cons ci ratio: 1.868661e-01	ci left: 1.212437e-04	ci right 1.465192e-04	k: 439	n:3290000
KS ci ratio: 2.450360e-03	ci left: 4.369982e-01	ci right 4.380706e-01	k: 1439488	n:3290000
HTR3B   3290000 perm   5296 sec   (621 perm/sec)   p_kst 4.375343e-01   p_cons 1.334347e-04   p_joint 7.455927e-04

Joint ci ratio: 7.407607e-02	ci left: 8.164654e-04	ci right 8.795672e-04	k: 2797	n:3300000
Cons ci ratio: 1.866542e-01	ci left: 1.211652e-04	ci right 1.463924e-04	k: 440	n:3300000
KS ci ratio: 2.446613e-03	ci left: 4.370053e-01	ci right 4.380760e-01	k: 1443884	n:3300000
HTR3B   3300000 perm   5326 sec   (620 perm/sec)   p_kst 4.375406e-01   p_cons 1.333333e-04   p_joint 8.475758e-04

Joint ci ratio: 7.398360e-02	ci left: 8.160744e-04	ci right 8.790639e-04	k: 2804	n:3310000
Cons ci ratio: 1.866542e-01	ci left: 1.207991e-04	ci right 1.459501e-04	k: 440	n:3310000
KS ci ratio: 2.442792e-03	ci left: 4.370307e-01	ci right 4.380999e-01	k: 1448341	n:3310000
HTR3B   3310000 perm   5356 sec   (618 perm/sec)   p_kst 4.375653e-01   p_cons 1.329305e-04   p_joint 8.471299e-04

Joint ci ratio: 7.381270e-02	ci left: 8.174597e-04	ci right 8.804041e-04	k: 2817	n:3320000
Cons ci ratio: 1.858133e-01	ci left: 1.215839e-04	ci right 1.467714e-04	k: 444	n:3320000
KS ci ratio: 2.439102e-03	ci left: 4.370331e-01	ci right 4.381007e-01	k: 1452722	n:3320000
HTR3B   3320000 perm   5387 sec   (616 perm/sec)   p_kst 4.375669e-01   p_cons 1.337349e-04   p_joint 8.484940e-04

Joint ci ratio: 7.373428e-02	ci left: 8.167734e-04	ci right 8.795953e-04	k: 2823	n:3330000
Cons ci ratio: 1.858134e-01	ci left: 1.212188e-04	ci right 1.463307e-04	k: 444	n:3330000
KS ci ratio: 2.435429e-03	ci left: 4.370355e-01	ci right 4.381015e-01	k: 1457103	n:3330000
HTR3B   3330000 perm   5418 sec   (615 perm/sec)   p_kst 4.375685e-01   p_cons 1.333333e-04   p_joint 8.477477e-04

Joint ci ratio: 7.356510e-02	ci left: 8.181485e-04	ci right 8.809256e-04	k: 2836	n:3340000
Cons ci ratio: 1.851901e-01	ci left: 1.217123e-04	ci right 1.468324e-04	k: 447	n:3340000
KS ci ratio: 2.431662e-03	ci left: 4.370604e-01	ci right 4.381247e-01	k: 1461559	n:3340000
HTR3B   3340000 perm   5448 sec   (613 perm/sec)   p_kst 4.375925e-01   p_cons 1.338323e-04   p_joint 8.491018e-04

Joint ci ratio: 7.344868e-02	ci left: 8.183435e-04	ci right 8.810319e-04	k: 2845	n:3350000
Cons ci ratio: 1.849838e-01	ci left: 1.216337e-04	ci right 1.467064e-04	k: 448	n:3350000
KS ci ratio: 2.427981e-03	ci left: 4.370711e-01	ci right 4.381338e-01	k: 1465968	n:3350000
HTR3B   3350000 perm   5478 sec   (612 perm/sec)   p_kst 4.376024e-01   p_cons 1.337313e-04   p_joint 8.492537e-04

Joint ci ratio: 7.449078e-02	ci left: 7.928305e-04	ci right 8.544636e-04	k: 2766	n:3360000
Cons ci ratio: 1.845732e-01	ci left: 1.218394e-04	ci right 1.468926e-04	k: 450	n:3360000
KS ci ratio: 2.424307e-03	ci left: 4.370837e-01	ci right 4.381449e-01	k: 1470384	n:3360000
HTR3B   3360000 perm   5509 sec   (610 perm/sec)   p_kst 4.376143e-01   p_cons 1.339286e-04   p_joint 8.232143e-04

Joint ci ratio: 7.436992e-02	ci left: 7.930988e-04	ci right 8.546484e-04	k: 2775	n:3370000
Cons ci ratio: 1.841653e-01	ci left: 1.220439e-04	ci right 1.470775e-04	k: 452	n:3370000
KS ci ratio: 2.420766e-03	ci left: 4.370726e-01	ci right 4.381322e-01	k: 1474720	n:3370000
HTR3B   3370000 perm   5540 sec   (608 perm/sec)   p_kst 4.376024e-01   p_cons 1.341246e-04   p_joint 8.234421e-04

Joint ci ratio: 7.423631e-02	ci left: 7.936560e-04	ci right 8.551334e-04	k: 2785	n:3380000
Cons ci ratio: 1.839623e-01	ci left: 1.219651e-04	ci right 1.469518e-04	k: 453	n:3380000
KS ci ratio: 2.417188e-03	ci left: 4.370722e-01	ci right 4.381303e-01	k: 1479092	n:3380000
HTR3B   3380000 perm   5571 sec   (607 perm/sec)   p_kst 4.376012e-01   p_cons 1.340237e-04   p_joint 8.239645e-04

Joint ci ratio: 7.412996e-02	ci left: 7.936309e-04	ci right 8.550145e-04	k: 2793	n:3390000
Cons ci ratio: 1.837601e-01	ci left: 1.218867e-04	ci right 1.468269e-04	k: 454	n:3390000
KS ci ratio: 2.413565e-03	ci left: 4.370842e-01	ci right 4.381407e-01	k: 1483506	n:3390000
HTR3B   3390000 perm   5603 sec   (605 perm/sec)   p_kst 4.376124e-01   p_cons 1.339233e-04   p_joint 8.238938e-04

Joint ci ratio: 7.394487e-02	ci left: 7.953382e-04	ci right 8.566936e-04	k: 2807	n:3400000
Cons ci ratio: 1.829576e-01	ci left: 1.226507e-04	ci right 1.476255e-04	k: 458	n:3400000
KS ci ratio: 2.409983e-03	ci left: 4.370911e-01	ci right 4.381460e-01	k: 1487903	n:3400000
HTR3B   3400000 perm   5635 sec   (603 perm/sec)   p_kst 4.376185e-01   p_cons 1.347059e-04   p_joint 8.255882e-04

Joint ci ratio: 7.389230e-02	ci left: 7.941571e-04	ci right 8.553760e-04	k: 2811	n:3410000
Cons ci ratio: 1.829576e-01	ci left: 1.222910e-04	ci right 1.471925e-04	k: 458	n:3410000
KS ci ratio: 2.406576e-03	ci left: 4.370654e-01	ci right 4.381188e-01	k: 1492189	n:3410000
HTR3B   3410000 perm   5667 sec   (602 perm/sec)   p_kst 4.375921e-01   p_cons 1.343109e-04   p_joint 8.243402e-04

Joint ci ratio: 7.397142e-02	ci left: 7.901130e-04	ci right 8.510881e-04	k: 2805	n:3420000
Cons ci ratio: 1.827586e-01	ci left: 1.222125e-04	ci right 1.470679e-04	k: 459	n:3420000
KS ci ratio: 2.403032e-03	ci left: 4.370709e-01	ci right 4.381228e-01	k: 1496581	n:3420000
HTR3B   3420000 perm   5698 sec   (600 perm/sec)   p_kst 4.375968e-01   p_cons 1.342105e-04   p_joint 8.201754e-04

Joint ci ratio: 6.803042e-02	ci left: 9.341510e-04	ci right 1.000224e-03	k: 3316	n:3430000
Cons ci ratio: 1.825603e-01	ci left: 1.221344e-04	ci right 1.469440e-04	k: 460	n:3430000
KS ci ratio: 2.399565e-03	ci left: 4.370638e-01	ci right 4.381141e-01	k: 1500930	n:3430000
HTR3B   3430000 perm   5729 sec   (599 perm/sec)   p_kst 4.375889e-01   p_cons 1.341108e-04   p_joint 9.667638e-04

Joint ci ratio: 6.796901e-02	ci left: 9.331500e-04	ci right 9.990900e-04	k: 3322	n:3440000
Cons ci ratio: 1.825603e-01	ci left: 1.217793e-04	ci right 1.465169e-04	k: 460	n:3440000
KS ci ratio: 2.396024e-03	ci left: 4.370751e-01	ci right 4.381239e-01	k: 1505342	n:3440000
HTR3B   3440000 perm   5761 sec   (597 perm/sec)   p_kst 4.375994e-01   p_cons 1.337209e-04   p_joint 9.656977e-04

Joint ci ratio: 6.784660e-02	ci left: 9.338644e-04	ci right 9.997314e-04	k: 3334	n:3450000
Cons ci ratio: 1.823627e-01	ci left: 1.217030e-04	ci right 1.463952e-04	k: 461	n:3450000
KS ci ratio: 2.392611e-03	ci left: 4.370631e-01	ci right 4.381103e-01	k: 1509674	n:3450000
HTR3B   3450000 perm   5792 sec   (596 perm/sec)   p_kst 4.375867e-01   p_cons 1.336232e-04   p_joint 9.663768e-04

Joint ci ratio: 6.777553e-02	ci left: 9.331542e-04	ci right 9.988995e-04	k: 3341	n:3460000
Cons ci ratio: 1.821656e-01	ci left: 1.216271e-04	ci right 1.462743e-04	k: 462	n:3460000
KS ci ratio: 2.389162e-03	ci left: 4.370616e-01	ci right 4.381073e-01	k: 1514042	n:3460000
HTR3B   3460000 perm   5824 sec   (594 perm/sec)   p_kst 4.375844e-01   p_cons 1.335260e-04   p_joint 9.656069e-04

Joint ci ratio: 6.764406e-02	ci left: 9.341480e-04	ci right 9.998306e-04	k: 3354	n:3470000
Cons ci ratio: 1.817734e-01	ci left: 1.218267e-04	ci right 1.464554e-04	k: 464	n:3470000
KS ci ratio: 2.385744e-03	ci left: 4.370566e-01	ci right 4.381008e-01	k: 1518398	n:3470000
HTR3B   3470000 perm   5856 sec   (593 perm/sec)   p_kst 4.375787e-01   p_cons 1.337176e-04   p_joint 9.665706e-04

Joint ci ratio: 6.759376e-02	ci left: 9.328761e-04	ci right 9.984186e-04	k: 3359	n:3480000
Cons ci ratio: 1.817735e-01	ci left: 1.214766e-04	ci right 1.460345e-04	k: 464	n:3480000
KS ci ratio: 2.382218e-03	ci left: 4.370773e-01	ci right 4.381200e-01	k: 1522843	n:3480000
HTR3B   3480000 perm   5888 sec   (591 perm/sec)   p_kst 4.375986e-01   p_cons 1.333333e-04   p_joint 9.652299e-04

Joint ci ratio: 6.753352e-02	ci left: 9.318932e-04	ci right 9.973061e-04	k: 3365	n:3490000
Cons ci ratio: 1.813838e-01	ci left: 1.216755e-04	ci right 1.462152e-04	k: 466	n:3490000
KS ci ratio: 2.378790e-03	ci left: 4.370806e-01	ci right 4.381218e-01	k: 1527228	n:3490000
HTR3B   3490000 perm   5919 sec   (590 perm/sec)   p_kst 4.376011e-01   p_cons 1.335244e-04   p_joint 9.641834e-04

Joint ci ratio: 6.734364e-02	ci left: 9.345678e-04	ci right 9.999767e-04	k: 3384	n:3500000
Cons ci ratio: 1.808040e-01	ci left: 1.221462e-04	ci right 1.466934e-04	k: 469	n:3500000
KS ci ratio: 2.375498e-03	ci left: 4.370588e-01	ci right 4.380985e-01	k: 1531525	n:3500000
HTR3B   3500000 perm   5951 sec   (588 perm/sec)   p_kst 4.375786e-01   p_cons 1.340000e-04   p_joint 9.668571e-04

Joint ci ratio: 6.726421e-02	ci left: 9.341460e-04	ci right 9.994453e-04	k: 3392	n:3510000
Cons ci ratio: 1.804205e-01	ci left: 1.223422e-04	ci right 1.468710e-04	k: 471	n:3510000
KS ci ratio: 2.372174e-03	ci left: 4.370467e-01	ci right 4.380850e-01	k: 1535856	n:3510000
HTR3B   3510000 perm   5983 sec   (587 perm/sec)   p_kst 4.375658e-01   p_cons 1.341880e-04   p_joint 9.663818e-04

Joint ci ratio: 6.713569e-02	ci left: 9.351233e-04	ci right 1.000361e-03	k: 3405	n:3520000
Cons ci ratio: 1.802297e-01	ci left: 1.222659e-04	ci right 1.467506e-04	k: 472	n:3520000
KS ci ratio: 2.368897e-03	ci left: 4.370277e-01	ci right 4.380645e-01	k: 1540162	n:3520000
HTR3B   3520000 perm   6015 sec   (585 perm/sec)   p_kst 4.375460e-01   p_cons 1.340909e-04   p_joint 9.673295e-04

Joint ci ratio: 6.707667e-02	ci left: 9.341454e-04	ci right 9.992555e-04	k: 3411	n:3530000
Cons ci ratio: 1.798498e-01	ci left: 1.224606e-04	ci right 1.469270e-04	k: 474	n:3530000
KS ci ratio: 2.365518e-03	ci left: 4.370328e-01	ci right 4.380681e-01	k: 1544553	n:3530000
HTR3B   3530000 perm   6048 sec   (584 perm/sec)   p_kst 4.375504e-01   p_cons 1.342776e-04   p_joint 9.662890e-04

Joint ci ratio: 6.700800e-02	ci left: 9.334508e-04	ci right 9.984433e-04	k: 3418	n:3540000
Cons ci ratio: 1.796608e-01	ci left: 1.223845e-04	ci right 1.468071e-04	k: 475	n:3540000
KS ci ratio: 2.362106e-03	ci left: 4.370478e-01	ci right 4.380817e-01	k: 1548979	n:3540000
HTR3B   3540000 perm   6081 sec   (582 perm/sec)   p_kst 4.375647e-01   p_cons 1.341808e-04   p_joint 9.655367e-04

Joint ci ratio: 6.711625e-02	ci left: 9.277747e-04	ci right 9.924804e-04	k: 3407	n:3550000
Cons ci ratio: 1.790973e-01	ci left: 1.228468e-04	ci right 1.472766e-04	k: 478	n:3550000
KS ci ratio: 2.358841e-03	ci left: 4.370351e-01	ci right 4.380675e-01	k: 1553307	n:3550000
HTR3B   3550000 perm   6113 sec   (581 perm/sec)   p_kst 4.375513e-01   p_cons 1.346479e-04   p_joint 9.597183e-04

Joint ci ratio: 6.721512e-02	ci left: 9.224067e-04	ci right 9.868365e-04	k: 3397	n:3560000
Cons ci ratio: 1.789106e-01	ci left: 1.227701e-04	ci right 1.471563e-04	k: 479	n:3560000
KS ci ratio: 2.355598e-03	ci left: 4.370208e-01	ci right 4.380517e-01	k: 1557629	n:3560000
HTR3B   3560000 perm   6145 sec   (579 perm/sec)   p_kst 4.375362e-01   p_cons 1.345506e-04   p_joint 9.542135e-04

Joint ci ratio: 6.712628e-02	ci left: 9.223016e-04	ci right 9.866356e-04	k: 3406	n:3570000
Cons ci ratio: 1.789106e-01	ci left: 1.224262e-04	ci right 1.467441e-04	k: 479	n:3570000
KS ci ratio: 2.352258e-03	ci left: 4.370296e-01	ci right 4.380590e-01	k: 1562033	n:3570000
HTR3B   3570000 perm   6178 sec   (578 perm/sec)   p_kst 4.375443e-01   p_cons 1.341737e-04   p_joint 9.540616e-04

Joint ci ratio: 6.705746e-02	ci left: 9.216478e-04	ci right 9.858677e-04	k: 3413	n:3580000
Cons ci ratio: 1.789107e-01	ci left: 1.220842e-04	ci right 1.463342e-04	k: 479	n:3580000
KS ci ratio: 2.348976e-03	ci left: 4.370290e-01	ci right 4.380571e-01	k: 1566404	n:3580000
HTR3B   3580000 perm   6211 sec   (576 perm/sec)   p_kst 4.375430e-01   p_cons 1.337989e-04   p_joint 9.533520e-04

Joint ci ratio: 6.698884e-02	ci left: 9.209977e-04	ci right 9.851041e-04	k: 3420	n:3590000
Cons ci ratio: 1.789107e-01	ci left: 1.217441e-04	ci right 1.459266e-04	k: 479	n:3590000
KS ci ratio: 2.345691e-03	ci left: 4.370322e-01	ci right 4.380588e-01	k: 1570788	n:3590000
HTR3B   3590000 perm   6245 sec   (575 perm/sec)   p_kst 4.375454e-01   p_cons 1.334262e-04   p_joint 9.526462e-04

Joint ci ratio: 6.687163e-02	ci left: 9.217169e-04	ci right 9.857568e-04	k: 3432	n:3600000
Cons ci ratio: 1.785391e-01	ci left: 1.219367e-04	ci right 1.461016e-04	k: 481	n:3600000
KS ci ratio: 2.342528e-03	ci left: 4.370125e-01	ci right 4.380376e-01	k: 1575090	n:3600000
HTR3B   3600000 perm   6280 sec   (573 perm/sec)   p_kst 4.375250e-01   p_cons 1.336111e-04   p_joint 9.533333e-04

Joint ci ratio: 6.682303e-02	ci left: 9.205256e-04	ci right 9.844344e-04	k: 3437	n:3610000
Cons ci ratio: 1.785392e-01	ci left: 1.215989e-04	ci right 1.456969e-04	k: 481	n:3610000
KS ci ratio: 2.339249e-03	ci left: 4.370200e-01	ci right 4.380438e-01	k: 1579490	n:3610000
HTR3B   3610000 perm   6314 sec   (572 perm/sec)   p_kst 4.375319e-01   p_cons 1.332410e-04   p_joint 9.520776e-04

Joint ci ratio: 6.674543e-02	ci left: 9.201557e-04	ci right 9.839618e-04	k: 3445	n:3620000
Cons ci ratio: 1.783543e-01	ci left: 1.215269e-04	ci right 1.455830e-04	k: 482	n:3620000
KS ci ratio: 2.335980e-03	ci left: 4.370281e-01	ci right 4.380504e-01	k: 1583892	n:3620000
HTR3B   3620000 perm   6348 sec   (570 perm/sec)   p_kst 4.375392e-01   p_cons 1.331492e-04   p_joint 9.516575e-04

Joint ci ratio: 6.666811e-02	ci left: 9.197880e-04	ci right 9.834918e-04	k: 3453	n:3630000
Cons ci ratio: 1.781699e-01	ci left: 1.214553e-04	ci right 1.454697e-04	k: 483	n:3630000
KS ci ratio: 2.332710e-03	ci left: 4.370394e-01	ci right 4.380604e-01	k: 1588306	n:3630000
HTR3B   3630000 perm   6384 sec   (569 perm/sec)   p_kst 4.375499e-01   p_cons 1.330579e-04   p_joint 9.512397e-04

Joint ci ratio: 6.657180e-02	ci left: 9.199626e-04	ci right 9.835829e-04	k: 3463	n:3640000
Cons ci ratio: 1.781699e-01	ci left: 1.211216e-04	ci right 1.450701e-04	k: 483	n:3640000
KS ci ratio: 2.329472e-03	ci left: 4.370469e-01	ci right 4.380664e-01	k: 1592706	n:3640000
HTR3B   3640000 perm   6420 sec   (567 perm/sec)   p_kst 4.375566e-01   p_cons 1.326923e-04   p_joint 9.513736e-04

Joint ci ratio: 6.645677e-02	ci left: 9.206751e-04	ci right 9.842305e-04	k: 3475	n:3650000
Cons ci ratio: 1.781700e-01	ci left: 1.207898e-04	ci right 1.446726e-04	k: 483	n:3650000
KS ci ratio: 2.326300e-03	ci left: 4.370430e-01	ci right 4.380612e-01	k: 1597065	n:3650000
HTR3B   3650000 perm   6454 sec   (566 perm/sec)   p_kst 4.375521e-01   p_cons 1.323288e-04   p_joint 9.520548e-04

Joint ci ratio: 6.637091e-02	ci left: 9.205778e-04	ci right 9.840412e-04	k: 3484	n:3660000
Cons ci ratio: 1.781700e-01	ci left: 1.204597e-04	ci right 1.442774e-04	k: 483	n:3660000
KS ci ratio: 2.323189e-03	ci left: 4.370291e-01	ci right 4.380458e-01	k: 1601387	n:3660000
HTR3B   3660000 perm   6489 sec   (564 perm/sec)   p_kst 4.375374e-01   p_cons 1.319672e-04   p_joint 9.519126e-04

Joint ci ratio: 6.629487e-02	ci left: 9.202131e-04	ci right 9.835758e-04	k: 3492	n:3670000
Cons ci ratio: 1.778030e-01	ci left: 1.206522e-04	ci right 1.444534e-04	k: 485	n:3670000
KS ci ratio: 2.320029e-03	ci left: 4.370283e-01	ci right 4.380437e-01	k: 1605757	n:3670000
HTR3B   3670000 perm   6525 sec   (562 perm/sec)   p_kst 4.375360e-01   p_cons 1.321526e-04   p_joint 9.514986e-04

Joint ci ratio: 6.925549e-02	ci left: 8.397075e-04	ci right 9.002128e-04	k: 3200	n:3680000
Cons ci ratio: 1.776204e-01	ci left: 1.205840e-04	ci right 1.443447e-04	k: 486	n:3680000
KS ci ratio: 2.316812e-03	ci left: 4.370422e-01	ci right 4.380562e-01	k: 1610181	n:3680000
HTR3B   3680000 perm   6562 sec   (561 perm/sec)   p_kst 4.375492e-01   p_cons 1.320652e-04   p_joint 8.695652e-04

Joint ci ratio: 6.910449e-02	ci left: 8.411603e-04	ci right 9.016328e-04	k: 3214	n:3690000
Cons ci ratio: 1.768953e-01	ci left: 1.212931e-04	ci right 1.450856e-04	k: 490	n:3690000
KS ci ratio: 2.313694e-03	ci left: 4.370379e-01	ci right 4.380505e-01	k: 1614538	n:3690000
HTR3B   3690000 perm   6596 sec   (559 perm/sec)   p_kst 4.375442e-01   p_cons 1.327913e-04   p_joint 8.710027e-04

Joint ci ratio: 6.901868e-02	ci left: 8.410117e-04	ci right 9.013954e-04	k: 3222	n:3700000
Cons ci ratio: 1.767155e-01	ci left: 1.212236e-04	ci right 1.449757e-04	k: 491	n:3700000
KS ci ratio: 2.310519e-03	ci left: 4.370485e-01	ci right 4.380597e-01	k: 1618950	n:3700000
HTR3B   3700000 perm   6630 sec   (558 perm/sec)   p_kst 4.375541e-01   p_cons 1.327027e-04   p_joint 8.708108e-04

Joint ci ratio: 6.893318e-02	ci left: 8.408640e-04	ci right 9.011593e-04	k: 3230	n:3710000
Cons ci ratio: 1.761791e-01	ci left: 1.216698e-04	ci right 1.454292e-04	k: 494	n:3710000
KS ci ratio: 2.307430e-03	ci left: 4.370434e-01	ci right 4.380532e-01	k: 1623304	n:3710000
HTR3B   3710000 perm   6663 sec   (557 perm/sec)   p_kst 4.375482e-01   p_cons 1.331536e-04   p_joint 8.706199e-04

Joint ci ratio: 6.880550e-02	ci left: 8.417739e-04	ci right 9.020182e-04	k: 3242	n:3720000
Cons ci ratio: 1.754715e-01	ci left: 1.223707e-04	ci right 1.461608e-04	k: 498	n:3720000
KS ci ratio: 2.304271e-03	ci left: 4.370560e-01	ci right 4.380645e-01	k: 1627724	n:3720000
HTR3B   3720000 perm   6698 sec   (555 perm/sec)   p_kst 4.375602e-01   p_cons 1.338710e-04   p_joint 8.715054e-04

Joint ci ratio: 6.874196e-02	ci left: 8.410980e-04	ci right 9.012361e-04	k: 3248	n:3730000
Cons ci ratio: 1.754715e-01	ci left: 1.220426e-04	ci right 1.457690e-04	k: 498	n:3730000
KS ci ratio: 2.301258e-03	ci left: 4.370399e-01	ci right 4.380471e-01	k: 1632037	n:3730000
HTR3B   3730000 perm   6733 sec   (554 perm/sec)   p_kst 4.375434e-01   p_cons 1.335121e-04   p_joint 8.707775e-04

Joint ci ratio: 6.862587e-02	ci left: 8.417398e-04	ci right 9.018181e-04	k: 3259	n:3740000
Cons ci ratio: 1.749464e-01	ci left: 1.224832e-04	ci right 1.462165e-04	k: 501	n:3740000
KS ci ratio: 2.298174e-03	ci left: 4.370418e-01	ci right 4.380476e-01	k: 1636417	n:3740000
HTR3B   3740000 perm   6766 sec   (553 perm/sec)   p_kst 4.375447e-01   p_cons 1.339572e-04   p_joint 8.713904e-04

Joint ci ratio: 6.901908e-02	ci left: 8.297981e-04	ci right 8.893770e-04	k: 3222	n:3750000
Cons ci ratio: 1.749464e-01	ci left: 1.221566e-04	ci right 1.458266e-04	k: 501	n:3750000
KS ci ratio: 2.295128e-03	ci left: 4.370381e-01	ci right 4.380425e-01	k: 1640776	n:3750000
HTR3B   3750000 perm   6800 sec   (551 perm/sec)   p_kst 4.375403e-01   p_cons 1.336000e-04   p_joint 8.592000e-04

Joint ci ratio: 6.944093e-02	ci left: 8.173982e-04	ci right 8.764600e-04	k: 3183	n:3760000
Cons ci ratio: 1.749465e-01	ci left: 1.218317e-04	ci right 1.454388e-04	k: 501	n:3760000
KS ci ratio: 2.292027e-03	ci left: 4.370488e-01	ci right 4.380519e-01	k: 1645189	n:3760000
HTR3B   3760000 perm   6833 sec   (550 perm/sec)   p_kst 4.375503e-01   p_cons 1.332447e-04   p_joint 8.465426e-04

Joint ci ratio: 6.937562e-02	ci left: 8.167939e-04	ci right 8.757543e-04	k: 3189	n:3770000
Cons ci ratio: 1.747725e-01	ci left: 1.217622e-04	ci right 1.453298e-04	k: 502	n:3770000
KS ci ratio: 2.288976e-03	ci left: 4.370514e-01	ci right 4.380532e-01	k: 1649572	n:3770000
HTR3B   3770000 perm   6867 sec   (549 perm/sec)   p_kst 4.375523e-01   p_cons 1.331565e-04   p_joint 8.458886e-04

Joint ci ratio: 6.925629e-02	ci left: 8.174927e-04	ci right 8.763980e-04	k: 3200	n:3780000
Cons ci ratio: 1.747725e-01	ci left: 1.214401e-04	ci right 1.449454e-04	k: 502	n:3780000
KS ci ratio: 2.285904e-03	ci left: 4.370612e-01	ci right 4.380617e-01	k: 1653982	n:3780000
HTR3B   3780000 perm   6901 sec   (548 perm/sec)   p_kst 4.375614e-01   p_cons 1.328042e-04   p_joint 8.465608e-04

Joint ci ratio: 6.919149e-02	ci left: 8.168914e-04	ci right 8.756961e-04	k: 3206	n:3790000
Cons ci ratio: 1.745990e-01	ci left: 1.213720e-04	ci right 1.448383e-04	k: 503	n:3790000
KS ci ratio: 2.282901e-03	ci left: 4.370588e-01	ci right 4.380579e-01	k: 1658346	n:3790000
HTR3B   3790000 perm   6936 sec   (546 perm/sec)   p_kst 4.375583e-01   p_cons 1.327177e-04   p_joint 8.459103e-04

Joint ci ratio: 6.900875e-02	ci left: 8.191381e-04	ci right 8.779425e-04	k: 3223	n:3800000
Cons ci ratio: 1.745991e-01	ci left: 1.210526e-04	ci right 1.444571e-04	k: 503	n:3800000
KS ci ratio: 2.279921e-03	ci left: 4.370538e-01	ci right 4.380516e-01	k: 1662700	n:3800000
HTR3B   3800000 perm   6970 sec   (545 perm/sec)   p_kst 4.375526e-01   p_cons 1.323684e-04   p_joint 8.481579e-04

Joint ci ratio: 6.919165e-02	ci left: 8.126032e-04	ci right 8.710993e-04	k: 3206	n:3810000
Cons ci ratio: 1.740817e-01	ci left: 1.214879e-04	ci right 1.448997e-04	k: 506	n:3810000
KS ci ratio: 2.277083e-03	ci left: 4.370207e-01	ci right 4.380172e-01	k: 1666947	n:3810000
HTR3B   3810000 perm   7004 sec   (544 perm/sec)   p_kst 4.375189e-01   p_cons 1.328084e-04   p_joint 8.414698e-04

Joint ci ratio: 6.922414e-02	ci left: 8.097042e-04	ci right 8.680201e-04	k: 3203	n:3820000
Cons ci ratio: 1.739103e-01	ci left: 1.214203e-04	ci right 1.447936e-04	k: 507	n:3820000
KS ci ratio: 2.274078e-03	ci left: 4.370263e-01	ci right 4.380215e-01	k: 1671341	n:3820000
HTR3B   3820000 perm   7038 sec   (543 perm/sec)   p_kst 4.375238e-01   p_cons 1.327225e-04   p_joint 8.384817e-04

Joint ci ratio: 6.914865e-02	ci left: 8.093861e-04	ci right 8.676130e-04	k: 3210	n:3830000
Cons ci ratio: 1.732296e-01	ci left: 1.221023e-04	ci right 1.455052e-04	k: 511	n:3830000
KS ci ratio: 2.271176e-03	ci left: 4.370120e-01	ci right 4.380059e-01	k: 1675659	n:3830000
HTR3B   3830000 perm   7073 sec   (541 perm/sec)   p_kst 4.375089e-01   p_cons 1.334204e-04   p_joint 8.381201e-04

Joint ci ratio: 6.907342e-02	ci left: 8.090698e-04	ci right 8.672080e-04	k: 3217	n:3840000
Cons ci ratio: 1.730606e-01	ci left: 1.220334e-04	ci right 1.453980e-04	k: 512	n:3840000
KS ci ratio: 2.268219e-03	ci left: 4.370123e-01	ci right 4.380049e-01	k: 1680033	n:3840000
HTR3B   3840000 perm   7108 sec   (540 perm/sec)   p_kst 4.375086e-01   p_cons 1.333333e-04   p_joint 8.377604e-04

Joint ci ratio: 6.894496e-02	ci left: 8.100314e-04	ci right 8.681262e-04	k: 3229	n:3850000
Cons ci ratio: 1.727243e-01	ci left: 1.222134e-04	ci right 1.455623e-04	k: 514	n:3850000
KS ci ratio: 2.265260e-03	ci left: 4.370153e-01	ci right 4.380066e-01	k: 1684417	n:3850000
HTR3B   3850000 perm   7143 sec   (539 perm/sec)   p_kst 4.375109e-01   p_cons 1.335065e-04   p_joint 8.387013e-04

Joint ci ratio: 6.889168e-02	ci left: 8.092059e-04	ci right 8.671948e-04	k: 3234	n:3860000
Cons ci ratio: 1.723898e-01	ci left: 1.223926e-04	ci right 1.457257e-04	k: 516	n:3860000
KS ci ratio: 2.262280e-03	ci left: 4.370255e-01	ci right 4.380155e-01	k: 1688829	n:3860000
HTR3B   3860000 perm   7178 sec   (538 perm/sec)   p_kst 4.375205e-01   p_cons 1.336788e-04   p_joint 8.378238e-04

Joint ci ratio: 6.875364e-02	ci left: 8.104163e-04	ci right 8.683709e-04	k: 3247	n:3870000
Cons ci ratio: 1.718918e-01	ci left: 1.228181e-04	ci right 1.461577e-04	k: 519	n:3870000
KS ci ratio: 2.259296e-03	ci left: 4.370390e-01	ci right 4.380278e-01	k: 1693254	n:3870000
HTR3B   3870000 perm   7214 sec   (536 perm/sec)   p_kst 4.375333e-01   p_cons 1.341085e-04   p_joint 8.390181e-04

Joint ci ratio: 6.866912e-02	ci left: 8.103540e-04	ci right 8.682301e-04	k: 3255	n:3880000
Cons ci ratio: 1.717268e-01	ci left: 1.227482e-04	ci right 1.460498e-04	k: 520	n:3880000
KS ci ratio: 2.256434e-03	ci left: 4.370285e-01	ci right 4.380160e-01	k: 1697586	n:3880000
HTR3B   3880000 perm   7248 sec   (535 perm/sec)   p_kst 4.375222e-01   p_cons 1.340206e-04   p_joint 8.389175e-04

Joint ci ratio: 6.856390e-02	ci left: 8.107974e-04	ci right 8.686130e-04	k: 3265	n:3890000
Cons ci ratio: 1.715622e-01	ci left: 1.226787e-04	ci right 1.459424e-04	k: 521	n:3890000
KS ci ratio: 2.253528e-03	ci left: 4.370301e-01	ci right 4.380163e-01	k: 1701965	n:3890000
HTR3B   3890000 perm   7285 sec   (534 perm/sec)   p_kst 4.375231e-01   p_cons 1.339332e-04   p_joint 8.393316e-04

Joint ci ratio: 6.849056e-02	ci left: 8.104826e-04	ci right 8.682114e-04	k: 3272	n:3900000
Cons ci ratio: 1.712345e-01	ci left: 1.228550e-04	ci right 1.461030e-04	k: 523	n:3900000
KS ci ratio: 2.250717e-03	ci left: 4.370132e-01	ci right 4.379982e-01	k: 1706272	n:3900000
HTR3B   3900000 perm   7321 sec   (533 perm/sec)   p_kst 4.375056e-01   p_cons 1.341026e-04   p_joint 8.389744e-04

Joint ci ratio: 6.841745e-02	ci left: 8.101694e-04	ci right 8.678118e-04	k: 3279	n:3910000
Cons ci ratio: 1.712345e-01	ci left: 1.225408e-04	ci right 1.457293e-04	k: 523	n:3910000
KS ci ratio: 2.247723e-03	ci left: 4.370386e-01	ci right 4.380223e-01	k: 1710744	n:3910000
HTR3B   3910000 perm   7357 sec   (531 perm/sec)   p_kst 4.375304e-01   p_cons 1.337596e-04   p_joint 8.386189e-04

Joint ci ratio: 6.823040e-02	ci left: 8.126160e-04	ci right 8.702682e-04	k: 3297	n:3920000
Cons ci ratio: 1.709086e-01	ci left: 1.227165e-04	ci right 1.458896e-04	k: 525	n:3920000
KS ci ratio: 2.244855e-03	ci left: 4.370392e-01	ci right 4.380216e-01	k: 1715119	n:3920000
HTR3B   3920000 perm   7392 sec   (530 perm/sec)   p_kst 4.375304e-01   p_cons 1.339286e-04   p_joint 8.410714e-04

Joint ci ratio: 6.812718e-02	ci left: 8.130495e-04	ci right 8.706417e-04	k: 3307	n:3930000
Cons ci ratio: 1.705846e-01	ci left: 1.228914e-04	ci right 1.460490e-04	k: 527	n:3930000
KS ci ratio: 2.241979e-03	ci left: 4.370438e-01	ci right 4.380250e-01	k: 1719510	n:3930000
HTR3B   3930000 perm   7428 sec   (529 perm/sec)   p_kst 4.375344e-01   p_cons 1.340967e-04   p_joint 8.414758e-04

Joint ci ratio: 6.804495e-02	ci left: 8.129818e-04	ci right 8.704970e-04	k: 3315	n:3940000
Cons ci ratio: 1.704233e-01	ci left: 1.228225e-04	ci right 1.459430e-04	k: 528	n:3940000
KS ci ratio: 2.239136e-03	ci left: 4.370436e-01	ci right 4.380235e-01	k: 1723882	n:3940000
HTR3B   3940000 perm   7470 sec   (527 perm/sec)   p_kst 4.375335e-01   p_cons 1.340102e-04   p_joint 8.413706e-04

Joint ci ratio: 6.894569e-02	ci left: 7.895240e-04	ci right 8.461486e-04	k: 3229	n:3950000
Cons ci ratio: 1.699421e-01	ci left: 1.232387e-04	ci right 1.463653e-04	k: 531	n:3950000
KS ci ratio: 2.236285e-03	ci left: 4.370474e-01	ci right 4.380261e-01	k: 1728270	n:3950000
HTR3B   3950000 perm   7509 sec   (526 perm/sec)   p_kst 4.375367e-01   p_cons 1.344304e-04   p_joint 8.174684e-04

Joint ci ratio: 6.883919e-02	ci left: 7.900120e-04	ci right 8.465806e-04	k: 3239	n:3960000
Cons ci ratio: 1.694649e-01	ci left: 1.236529e-04	ci right 1.467854e-04	k: 534	n:3960000
KS ci ratio: 2.233466e-03	ci left: 4.370467e-01	ci right 4.380241e-01	k: 1732640	n:3960000
HTR3B   3960000 perm   7545 sec   (525 perm/sec)   p_kst 4.375354e-01   p_cons 1.348485e-04   p_joint 8.179293e-04

Joint ci ratio: 6.877556e-02	ci left: 7.895074e-04	ci right 8.459855e-04	k: 3245	n:3970000
Cons ci ratio: 1.693068e-01	ci left: 1.235826e-04	ci right 1.466782e-04	k: 535	n:3970000
KS ci ratio: 2.230628e-03	ci left: 4.370525e-01	ci right 4.380287e-01	k: 1737036	n:3970000
HTR3B   3970000 perm   7582 sec   (524 perm/sec)   p_kst 4.375406e-01   p_cons 1.347607e-04   p_joint 8.173804e-04

Joint ci ratio: 6.866985e-02	ci left: 7.899931e-04	ci right 8.464156e-04	k: 3255	n:3980000
Cons ci ratio: 1.689918e-01	ci left: 1.237534e-04	ci right 1.468335e-04	k: 537	n:3980000
KS ci ratio: 2.227796e-03	ci left: 4.370593e-01	ci right 4.380343e-01	k: 1741436	n:3980000
HTR3B   3980000 perm   7619 sec   (522 perm/sec)   p_kst 4.375467e-01   p_cons 1.349246e-04   p_joint 8.178392e-04

Joint ci ratio: 6.860668e-02	ci left: 7.894911e-04	ci right 8.458239e-04	k: 3261	n:3990000
Cons ci ratio: 1.686785e-01	ci left: 1.239233e-04	ci right 1.469879e-04	k: 539	n:3990000
KS ci ratio: 2.224918e-03	ci left: 4.370786e-01	ci right 4.380523e-01	k: 1745886	n:3990000
HTR3B   3990000 perm   7656 sec   (521 perm/sec)   p_kst 4.375654e-01   p_cons 1.350877e-04   p_joint 8.172932e-04

Joint ci ratio: 6.852271e-02	ci left: 7.894831e-04	ci right 8.457436e-04	k: 3269	n:4000000
Cons ci ratio: 1.685225e-01	ci left: 1.238529e-04	ci right 1.468809e-04	k: 540	n:4000000
KS ci ratio: 2.222092e-03	ci left: 4.370888e-01	ci right 4.380613e-01	k: 1750300	n:4000000
HTR3B   4000000 perm   7693 sec   (520 perm/sec)   p_kst 4.375750e-01   p_cons 1.350000e-04   p_joint 8.172500e-04

Joint ci ratio: 6.845995e-02	ci left: 7.889849e-04	ci right 8.451564e-04	k: 3275	n:4010000
Cons ci ratio: 1.683670e-01	ci left: 1.237829e-04	ci right 1.467745e-04	k: 541	n:4010000
KS ci ratio: 2.219275e-03	ci left: 4.370992e-01	ci right 4.380705e-01	k: 1754715	n:4010000
HTR3B   4010000 perm   7731 sec   (519 perm/sec)   p_kst 4.375848e-01   p_cons 1.349127e-04   p_joint 8.167082e-04

Joint ci ratio: 6.597702e-02	ci left: 8.484119e-04	ci right 9.065398e-04	k: 3526	n:4020000
Cons ci ratio: 1.682119e-01	ci left: 1.237133e-04	ci right 1.466686e-04	k: 542	n:4020000
KS ci ratio: 2.216511e-03	ci left: 4.371003e-01	ci right 4.380704e-01	k: 1759093	n:4020000
HTR3B   4020000 perm   7770 sec   (517 perm/sec)   p_kst 4.375853e-01   p_cons 1.348259e-04   p_joint 8.771144e-04

Joint ci ratio: 6.584642e-02	ci left: 8.497233e-04	ci right 9.078215e-04	k: 3540	n:4030000
Cons ci ratio: 1.679030e-01	ci left: 1.238817e-04	ci right 1.468218e-04	k: 544	n:4030000
KS ci ratio: 2.213687e-03	ci left: 4.371168e-01	ci right 4.380858e-01	k: 1763533	n:4030000
HTR3B   4030000 perm   7809 sec   (516 perm/sec)   p_kst 4.376012e-01   p_cons 1.349876e-04   p_joint 8.784119e-04

Joint ci ratio: 6.572585e-02	ci left: 8.507850e-04	ci right 9.088451e-04	k: 3553	n:4040000
Cons ci ratio: 1.677492e-01	ci left: 1.238122e-04	ci right 1.467163e-04	k: 545	n:4040000
KS ci ratio: 2.211028e-03	ci left: 4.370991e-01	ci right 4.380668e-01	k: 1767835	n:4040000
HTR3B   4040000 perm   7845 sec   (515 perm/sec)   p_kst 4.375829e-01   p_cons 1.349010e-04   p_joint 8.794554e-04

Joint ci ratio: 6.567969e-02	ci left: 8.498985e-04	ci right 9.078559e-04	k: 3558	n:4050000
Cons ci ratio: 1.677492e-01	ci left: 1.235065e-04	ci right 1.463541e-04	k: 545	n:4050000
KS ci ratio: 2.208291e-03	ci left: 4.371010e-01	ci right 4.380675e-01	k: 1772216	n:4050000
HTR3B   4050000 perm   7887 sec   (514 perm/sec)   p_kst 4.375842e-01   p_cons 1.345679e-04   p_joint 8.785185e-04

Joint ci ratio: 6.560601e-02	ci left: 8.497433e-04	ci right 9.076226e-04	k: 3566	n:4060000
Cons ci ratio: 1.672902e-01	ci left: 1.239102e-04	ci right 1.467634e-04	k: 548	n:4060000
KS ci ratio: 2.205519e-03	ci left: 4.371129e-01	ci right 4.380783e-01	k: 1776638	n:4060000
HTR3B   4060000 perm   7926 sec   (512 perm/sec)   p_kst 4.375956e-01   p_cons 1.349754e-04   p_joint 8.783251e-04

Joint ci ratio: 6.637409e-02	ci left: 8.278402e-04	ci right 8.849131e-04	k: 3484	n:4070000
Cons ci ratio: 1.669863e-01	ci left: 1.240766e-04	ci right 1.469148e-04	k: 550	n:4070000
KS ci ratio: 2.202789e-03	ci left: 4.371177e-01	ci right 4.380819e-01	k: 1781031	n:4070000
HTR3B   4070000 perm   7970 sec   (511 perm/sec)   p_kst 4.375998e-01   p_cons 1.351351e-04   p_joint 8.560197e-04

Joint ci ratio: 6.626957e-02	ci left: 8.284625e-04	ci right 8.854850e-04	k: 3495	n:4080000
Cons ci ratio: 1.669863e-01	ci left: 1.237725e-04	ci right 1.465547e-04	k: 550	n:4080000
KS ci ratio: 2.200005e-03	ci left: 4.371369e-01	ci right 4.380999e-01	k: 1785483	n:4080000
HTR3B   4080000 perm   8010 sec   (509 perm/sec)   p_kst 4.376184e-01   p_cons 1.348039e-04   p_joint 8.566176e-04

Joint ci ratio: 6.616554e-02	ci left: 8.290819e-04	ci right 8.860540e-04	k: 3506	n:4090000
Cons ci ratio: 1.668350e-01	ci left: 1.237042e-04	ci right 1.464511e-04	k: 551	n:4090000
KS ci ratio: 2.197289e-03	ci left: 4.371431e-01	ci right 4.381049e-01	k: 1789882	n:4090000
HTR3B   4090000 perm   8049 sec   (508 perm/sec)   p_kst 4.376240e-01   p_cons 1.347188e-04   p_joint 8.572127e-04

Joint ci ratio: 6.602444e-02	ci left: 8.306578e-04	ci right 8.876119e-04	k: 3521	n:4100000
Cons ci ratio: 1.666841e-01	ci left: 1.236362e-04	ci right 1.463480e-04	k: 552	n:4100000
KS ci ratio: 2.194634e-03	ci left: 4.371378e-01	ci right 4.380984e-01	k: 1794234	n:4100000
HTR3B   4100000 perm   8087 sec   (507 perm/sec)   p_kst 4.376180e-01   p_cons 1.346341e-04   p_joint 8.587805e-04

Joint ci ratio: 6.593090e-02	ci left: 8.310297e-04	ci right 8.879254e-04	k: 3531	n:4110000
Cons ci ratio: 1.666841e-01	ci left: 1.233354e-04	ci right 1.459919e-04	k: 552	n:4110000
KS ci ratio: 2.191903e-03	ci left: 4.371517e-01	ci right 4.381112e-01	k: 1798665	n:4110000
HTR3B   4110000 perm   8130 sec   (506 perm/sec)   p_kst 4.376314e-01   p_cons 1.343066e-04   p_joint 8.591241e-04

Joint ci ratio: 6.586567e-02	ci left: 8.306837e-04	ci right 8.874973e-04	k: 3538	n:4120000
Cons ci ratio: 1.665336e-01	ci left: 1.232686e-04	ci right 1.458904e-04	k: 553	n:4120000
KS ci ratio: 2.189268e-03	ci left: 4.371461e-01	ci right 4.381044e-01	k: 1803016	n:4120000
HTR3B   4120000 perm   8170 sec   (504 perm/sec)   p_kst 4.376252e-01   p_cons 1.342233e-04   p_joint 8.587379e-04

Joint ci ratio: 6.576353e-02	ci left: 8.312920e-04	ci right 8.880557e-04	k: 3549	n:4130000
Cons ci ratio: 1.665337e-01	ci left: 1.229701e-04	ci right 1.455371e-04	k: 553	n:4130000
KS ci ratio: 2.186535e-03	ci left: 4.371651e-01	ci right 4.381222e-01	k: 1807468	n:4130000
HTR3B   4130000 perm   8209 sec   (503 perm/sec)   p_kst 4.376436e-01   p_cons 1.338983e-04   p_joint 8.593220e-04

Joint ci ratio: 6.564341e-02	ci left: 8.323726e-04	ci right 8.891023e-04	k: 3562	n:4140000
Cons ci ratio: 1.662338e-01	ci left: 1.231361e-04	ci right 1.456888e-04	k: 555	n:4140000
KS ci ratio: 2.183918e-03	ci left: 4.371600e-01	ci right 4.381160e-01	k: 1811821	n:4140000
HTR3B   4140000 perm   8247 sec   (502 perm/sec)   p_kst 4.376379e-01   p_cons 1.340580e-04   p_joint 8.603865e-04

Joint ci ratio: 6.558823e-02	ci left: 8.317889e-04	ci right 8.884293e-04	k: 3568	n:4150000
Cons ci ratio: 1.660846e-01	ci left: 1.230703e-04	ci right 1.455887e-04	k: 556	n:4150000
KS ci ratio: 2.181179e-03	ci left: 4.371843e-01	ci right 4.381392e-01	k: 1816296	n:4150000
HTR3B   4150000 perm   8284 sec   (501 perm/sec)   p_kst 4.376617e-01   p_cons 1.339759e-04   p_joint 8.597590e-04

Joint ci ratio: 6.546907e-02	ci left: 8.328632e-04	ci right 8.894699e-04	k: 3581	n:4160000
Cons ci ratio: 1.657872e-01	ci left: 1.232353e-04	ci right 1.457394e-04	k: 558	n:4160000
KS ci ratio: 2.178557e-03	ci left: 4.371847e-01	ci right 4.381384e-01	k: 1820672	n:4160000
HTR3B   4160000 perm   8323 sec   (500 perm/sec)   p_kst 4.376615e-01   p_cons 1.341346e-04   p_joint 8.608173e-04

Joint ci ratio: 6.539609e-02	ci left: 8.327530e-04	ci right 8.892867e-04	k: 3589	n:4170000
Cons ci ratio: 1.657872e-01	ci left: 1.229397e-04	ci right 1.453899e-04	k: 558	n:4170000
KS ci ratio: 2.176081e-03	ci left: 4.371542e-01	ci right 4.381068e-01	k: 1824919	n:4170000
HTR3B   4170000 perm   8362 sec   (499 perm/sec)   p_kst 4.376305e-01   p_cons 1.338129e-04   p_joint 8.606715e-04

Joint ci ratio: 6.535062e-02	ci left: 8.319374e-04	ci right 8.883750e-04	k: 3594	n:4180000
Cons ci ratio: 1.657872e-01	ci left: 1.226456e-04	ci right 1.450421e-04	k: 558	n:4180000
KS ci ratio: 2.173509e-03	ci left: 4.371473e-01	ci right 4.380987e-01	k: 1829264	n:4180000
HTR3B   4180000 perm   8400 sec   (498 perm/sec)   p_kst 4.376230e-01   p_cons 1.334928e-04   p_joint 8.598086e-04

Joint ci ratio: 6.528710e-02	ci left: 8.315952e-04	ci right 8.879527e-04	k: 3601	n:4190000
Cons ci ratio: 1.654914e-01	ci left: 1.228105e-04	ci right 1.451930e-04	k: 560	n:4190000
KS ci ratio: 2.170879e-03	ci left: 4.371557e-01	ci right 4.381060e-01	k: 1833673	n:4190000
HTR3B   4190000 perm   8437 sec   (497 perm/sec)   p_kst 4.376308e-01   p_cons 1.336516e-04   p_joint 8.594272e-04

Joint ci ratio: 6.535986e-02	ci left: 8.277415e-04	ci right 8.839027e-04	k: 3593	n:4200000
Cons ci ratio: 1.650507e-01	ci left: 1.232028e-04	ci right 1.455911e-04	k: 563	n:4200000
KS ci ratio: 2.168299e-03	ci left: 4.371550e-01	ci right 4.381041e-01	k: 1838044	n:4200000
HTR3B   4200000 perm   8474 sec   (496 perm/sec)   p_kst 4.376295e-01   p_cons 1.340476e-04   p_joint 8.554762e-04

Joint ci ratio: 6.527817e-02	ci left: 8.278782e-04	ci right 8.839758e-04	k: 3602	n:4210000
Cons ci ratio: 1.650507e-01	ci left: 1.229102e-04	ci right 1.452453e-04	k: 563	n:4210000
KS ci ratio: 2.165645e-03	ci left: 4.371731e-01	ci right 4.381211e-01	k: 1842494	n:4210000
HTR3B   4210000 perm   8512 sec   (495 perm/sec)   p_kst 4.376470e-01   p_cons 1.337292e-04   p_joint 8.555819e-04

Joint ci ratio: 6.517873e-02	ci left: 8.284806e-04	ci right 8.845302e-04	k: 3613	n:4220000
Cons ci ratio: 1.650507e-01	ci left: 1.226189e-04	ci right 1.449011e-04	k: 563	n:4220000
KS ci ratio: 2.163126e-03	ci left: 4.371626e-01	ci right 4.381095e-01	k: 1846824	n:4220000
HTR3B   4220000 perm   8552 sec   (493 perm/sec)   p_kst 4.376360e-01   p_cons 1.334123e-04   p_joint 8.561611e-04

Joint ci ratio: 6.513372e-02	ci left: 8.276848e-04	ci right 8.836404e-04	k: 3618	n:4230000
Cons ci ratio: 1.649046e-01	ci left: 1.225557e-04	ci right 1.448048e-04	k: 564	n:4230000
KS ci ratio: 2.160639e-03	ci left: 4.371470e-01	ci right 4.380928e-01	k: 1851132	n:4230000
HTR3B   4230000 perm   8591 sec   (492 perm/sec)   p_kst 4.376199e-01   p_cons 1.333333e-04   p_joint 8.553191e-04

Joint ci ratio: 6.507981e-02	ci left: 8.271247e-04	ci right 8.829945e-04	k: 3624	n:4240000
Cons ci ratio: 1.644685e-01	ci left: 1.229450e-04	ci right 1.451999e-04	k: 567	n:4240000
KS ci ratio: 2.158048e-03	ci left: 4.371570e-01	ci right 4.381016e-01	k: 1855548	n:4240000
HTR3B   4240000 perm   8630 sec   (491 perm/sec)   p_kst 4.376292e-01   p_cons 1.337264e-04   p_joint 8.547170e-04

Joint ci ratio: 6.502604e-02	ci left: 8.265673e-04	ci right 8.823516e-04	k: 3630	n:4250000
Cons ci ratio: 1.644685e-01	ci left: 1.226557e-04	ci right 1.448583e-04	k: 567	n:4250000
KS ci ratio: 2.155507e-03	ci left: 4.371577e-01	ci right 4.381012e-01	k: 1859925	n:4250000
HTR3B   4250000 perm   8669 sec   (490 perm/sec)   p_kst 4.376294e-01   p_cons 1.334118e-04   p_joint 8.541176e-04

Joint ci ratio: 6.507994e-02	ci left: 8.232415e-04	ci right 8.788491e-04	k: 3624	n:4260000
Cons ci ratio: 1.643240e-01	ci left: 1.225929e-04	ci right 1.447626e-04	k: 568	n:4260000
KS ci ratio: 2.152999e-03	ci left: 4.371530e-01	ci right 4.380954e-01	k: 1864279	n:4260000
HTR3B   4260000 perm   8706 sec   (489 perm/sec)   p_kst 4.376242e-01   p_cons 1.333333e-04   p_joint 8.507042e-04

Joint ci ratio: 6.499035e-02	ci left: 8.236173e-04	ci right 8.791709e-04	k: 3634	n:4270000
Cons ci ratio: 1.641798e-01	ci left: 1.225303e-04	ci right 1.446674e-04	k: 569	n:4270000
KS ci ratio: 2.150535e-03	ci left: 4.371402e-01	ci right 4.380815e-01	k: 1868598	n:4270000
HTR3B   4270000 perm   8745 sec   (488 perm/sec)   p_kst 4.376108e-01   p_cons 1.332553e-04   p_joint 8.510539e-04

Joint ci ratio: 6.489222e-02	ci left: 8.242214e-04	ci right 8.797285e-04	k: 3645	n:4280000
Cons ci ratio: 1.641798e-01	ci left: 1.222441e-04	ci right 1.443294e-04	k: 569	n:4280000
KS ci ratio: 2.148031e-03	ci left: 4.371383e-01	ci right 4.380786e-01	k: 1872964	n:4280000
HTR3B   4280000 perm   8785 sec   (487 perm/sec)   p_kst 4.376084e-01   p_cons 1.329439e-04   p_joint 8.516355e-04

Joint ci ratio: 6.499943e-02	ci left: 8.195483e-04	ci right 8.748353e-04	k: 3633	n:4290000
Cons ci ratio: 1.638925e-01	ci left: 1.224062e-04	ci right 1.444783e-04	k: 571	n:4290000
KS ci ratio: 2.145458e-03	ci left: 4.371545e-01	ci right 4.380936e-01	k: 1877407	n:4290000
HTR3B   4290000 perm   8825 sec   (486 perm/sec)   p_kst 4.376240e-01   p_cons 1.331002e-04   p_joint 8.468531e-04

Joint ci ratio: 6.488344e-02	ci left: 8.206165e-04	ci right 8.758732e-04	k: 3646	n:4300000
Cons ci ratio: 1.636067e-01	ci left: 1.225676e-04	ci right 1.446264e-04	k: 573	n:4300000
KS ci ratio: 2.143024e-03	ci left: 4.371408e-01	ci right 4.380788e-01	k: 1881722	n:4300000
HTR3B   4300000 perm   8865 sec   (485 perm/sec)   p_kst 4.376098e-01   p_cons 1.332558e-04   p_joint 8.479070e-04

Joint ci ratio: 6.515226e-02	ci left: 8.118650e-04	ci right 8.667674e-04	k: 3616	n:4310000
Cons ci ratio: 1.636067e-01	ci left: 1.222832e-04	ci right 1.442909e-04	k: 573	n:4310000
KS ci ratio: 2.140457e-03	ci left: 4.371596e-01	ci right 4.380966e-01	k: 1886177	n:4310000
HTR3B   4310000 perm   8905 sec   (484 perm/sec)   p_kst 4.376281e-01   p_cons 1.329466e-04   p_joint 8.389791e-04

Joint ci ratio: 6.504442e-02	ci left: 8.127183e-04	ci right 8.675840e-04	k: 3628	n:4320000
Cons ci ratio: 1.633224e-01	ci left: 1.224441e-04	ci right 1.444388e-04	k: 575	n:4320000
KS ci ratio: 2.138036e-03	ci left: 4.371469e-01	ci right 4.380828e-01	k: 1890496	n:4320000
HTR3B   4320000 perm   8945 sec   (483 perm/sec)   p_kst 4.376148e-01   p_cons 1.331019e-04   p_joint 8.398148e-04

Joint ci ratio: 6.496391e-02	ci left: 8.128861e-04	ci right 8.676926e-04	k: 3637	n:4330000
Cons ci ratio: 1.628987e-01	ci left: 1.228259e-04	ci right 1.448263e-04	k: 578	n:4330000
KS ci ratio: 2.135530e-03	ci left: 4.371555e-01	ci right 4.380903e-01	k: 1894907	n:4330000
HTR3B   4330000 perm   8985 sec   (482 perm/sec)   p_kst 4.376229e-01   p_cons 1.334873e-04   p_joint 8.399538e-04

Joint ci ratio: 6.492826e-02	ci left: 8.119197e-04	ci right 8.666300e-04	k: 3641	n:4340000
Cons ci ratio: 1.628988e-01	ci left: 1.225429e-04	ci right 1.444926e-04	k: 578	n:4340000
KS ci ratio: 2.133101e-03	ci left: 4.371486e-01	ci right 4.380823e-01	k: 1899251	n:4340000
HTR3B   4340000 perm   9024 sec   (481 perm/sec)   p_kst 4.376154e-01   p_cons 1.331797e-04   p_joint 8.389401e-04

Joint ci ratio: 6.486596e-02	ci left: 8.116363e-04	ci right 8.662730e-04	k: 3648	n:4350000
Cons ci ratio: 1.627583e-01	ci left: 1.224817e-04	ci right 1.443997e-04	k: 579	n:4350000
KS ci ratio: 2.130692e-03	ci left: 4.371390e-01	ci right 4.380716e-01	k: 1903583	n:4350000
HTR3B   4350000 perm   9063 sec   (480 perm/sec)   p_kst 4.376053e-01   p_cons 1.331034e-04   p_joint 8.386207e-04

Joint ci ratio: 6.476839e-02	ci left: 8.122568e-04	ci right 8.668500e-04	k: 3659	n:4360000
Cons ci ratio: 1.621999e-01	ci left: 1.230809e-04	ci right 1.450232e-04	k: 583	n:4360000
KS ci ratio: 2.128251e-03	ci left: 4.371386e-01	ci right 4.380702e-01	k: 1907955	n:4360000
HTR3B   4360000 perm   9103 sec   (479 perm/sec)   p_kst 4.376044e-01   p_cons 1.337156e-04   p_joint 8.392202e-04

Joint ci ratio: 6.469773e-02	ci left: 8.121991e-04	ci right 8.667266e-04	k: 3667	n:4370000
Cons ci ratio: 1.621999e-01	ci left: 1.227993e-04	ci right 1.446913e-04	k: 583	n:4370000
KS ci ratio: 2.125790e-03	ci left: 4.371449e-01	ci right 4.380753e-01	k: 1912356	n:4370000
HTR3B   4370000 perm   9142 sec   (478 perm/sec)   p_kst 4.376101e-01   p_cons 1.334096e-04   p_joint 8.391304e-04

Joint ci ratio: 6.015757e-02	ci left: 9.393539e-04	ci right 9.978387e-04	k: 4241	n:4380000
Cons ci ratio: 1.619229e-01	ci left: 1.229570e-04	ci right 1.448361e-04	k: 585	n:4380000
KS ci ratio: 2.123346e-03	ci left: 4.371490e-01	ci right 4.380784e-01	k: 1916748	n:4380000
HTR3B   4380000 perm   9181 sec   (477 perm/sec)   p_kst 4.376137e-01   p_cons 1.335616e-04   p_joint 9.682648e-04

Joint ci ratio: 6.009386e-02	ci left: 9.392335e-04	ci right 9.976467e-04	k: 4250	n:4390000
Cons ci ratio: 1.616472e-01	ci left: 1.231141e-04	ci right 1.449802e-04	k: 587	n:4390000
KS ci ratio: 2.120887e-03	ci left: 4.371586e-01	ci right 4.380870e-01	k: 1921164	n:4390000
HTR3B   4390000 perm   9221 sec   (476 perm/sec)   p_kst 4.376228e-01   p_cons 1.337130e-04   p_joint 9.681093e-04

Joint ci ratio: 6.001625e-02	ci left: 9.395613e-04	ci right 9.979168e-04	k: 4261	n:4400000
Cons ci ratio: 1.613730e-01	ci left: 1.232704e-04	ci right 1.451236e-04	k: 589	n:4400000
KS ci ratio: 2.118533e-03	ci left: 4.371457e-01	ci right 4.380730e-01	k: 1925481	n:4400000
HTR3B   4400000 perm   9261 sec   (475 perm/sec)   p_kst 4.376093e-01   p_cons 1.338636e-04   p_joint 9.684091e-04

Joint ci ratio: 6.063901e-02	ci left: 9.180001e-04	ci right 9.756289e-04	k: 4174	n:4410000
Cons ci ratio: 1.613730e-01	ci left: 1.229909e-04	ci right 1.447945e-04	k: 589	n:4410000
KS ci ratio: 2.116177e-03	ci left: 4.371353e-01	ci right 4.380616e-01	k: 1929809	n:4410000
HTR3B   4410000 perm   9300 sec   (474 perm/sec)   p_kst 4.375984e-01   p_cons 1.335601e-04   p_joint 9.464853e-04

Joint ci ratio: 6.057376e-02	ci left: 9.179286e-04	ci right 9.754886e-04	k: 4183	n:4420000
Cons ci ratio: 1.611002e-01	ci left: 1.231469e-04	ci right 1.449376e-04	k: 591	n:4420000
KS ci ratio: 2.113759e-03	ci left: 4.371411e-01	ci right 4.380663e-01	k: 1934208	n:4420000
HTR3B   4420000 perm   9344 sec   (473 perm/sec)   p_kst 4.376036e-01   p_cons 1.337104e-04   p_joint 9.463801e-04

Joint ci ratio: 6.047264e-02	ci left: 9.189689e-04	ci right 9.764947e-04	k: 4197	n:4430000
Cons ci ratio: 1.608287e-01	ci left: 1.233022e-04	ci right 1.450801e-04	k: 593	n:4430000
KS ci ratio: 2.111389e-03	ci left: 4.371377e-01	ci right 4.380619e-01	k: 1938567	n:4430000
HTR3B   4430000 perm   9385 sec   (472 perm/sec)   p_kst 4.375998e-01   p_cons 1.338600e-04   p_joint 9.474041e-04

Joint ci ratio: 6.042230e-02	ci left: 9.184519e-04	ci right 9.758958e-04	k: 4204	n:4440000
Cons ci ratio: 1.606935e-01	ci left: 1.232406e-04	ci right 1.449876e-04	k: 594	n:4440000
KS ci ratio: 2.108981e-03	ci left: 4.371450e-01	ci right 4.380681e-01	k: 1942973	n:4440000
HTR3B   4440000 perm   9427 sec   (471 perm/sec)   p_kst 4.376065e-01   p_cons 1.337838e-04   p_joint 9.468468e-04

Joint ci ratio: 6.035775e-02	ci left: 9.183799e-04	ci right 9.757558e-04	k: 4213	n:4450000
Cons ci ratio: 1.602899e-01	ci left: 1.236108e-04	ci right 1.453630e-04	k: 597	n:4450000
KS ci ratio: 2.106635e-03	ci left: 4.371397e-01	ci right 4.380618e-01	k: 1947323	n:4450000
HTR3B   4450000 perm   9468 sec   (470 perm/sec)   p_kst 4.376007e-01   p_cons 1.341573e-04   p_joint 9.467416e-04

Joint ci ratio: 6.029340e-02	ci left: 9.183083e-04	ci right 9.756163e-04	k: 4222	n:4460000
Cons ci ratio: 1.601561e-01	ci left: 1.235489e-04	ci right 1.452703e-04	k: 598	n:4460000
KS ci ratio: 2.104211e-03	ci left: 4.371545e-01	ci right 4.380756e-01	k: 1951763	n:4460000
HTR3B   4460000 perm   9508 sec   (469 perm/sec)   p_kst 4.376150e-01   p_cons 1.340807e-04   p_joint 9.466368e-04

Joint ci ratio: 6.025064e-02	ci left: 9.175759e-04	ci right 9.747963e-04	k: 4228	n:4470000
Cons ci ratio: 1.597565e-01	ci left: 1.239167e-04	ci right 1.456433e-04	k: 601	n:4470000
KS ci ratio: 2.101869e-03	ci left: 4.371519e-01	ci right 4.380719e-01	k: 1956125	n:4470000
HTR3B   4470000 perm   9549 sec   (468 perm/sec)   p_kst 4.376119e-01   p_cons 1.344519e-04   p_joint 9.458613e-04

Joint ci ratio: 6.111753e-02	ci left: 8.893679e-04	ci right 9.456554e-04	k: 4109	n:4480000
Cons ci ratio: 1.594918e-01	ci left: 1.240687e-04	ci right 1.457824e-04	k: 603	n:4480000
KS ci ratio: 2.099466e-03	ci left: 4.371655e-01	ci right 4.380845e-01	k: 1960560	n:4480000
HTR3B   4480000 perm   9590 sec   (467 perm/sec)   p_kst 4.376250e-01   p_cons 1.345982e-04   p_joint 9.171875e-04

Joint ci ratio: 6.108042e-02	ci left: 8.884837e-04	ci right 9.446798e-04	k: 4114	n:4490000
Cons ci ratio: 1.594918e-01	ci left: 1.237924e-04	ci right 1.454577e-04	k: 603	n:4490000
KS ci ratio: 2.097115e-03	ci left: 4.371689e-01	ci right 4.380869e-01	k: 1964949	n:4490000
HTR3B   4490000 perm   9632 sec   (466 perm/sec)   p_kst 4.376278e-01   p_cons 1.342984e-04   p_joint 9.162584e-04

Joint ci ratio: 6.099893e-02	ci left: 8.889164e-04	ci right 9.450623e-04	k: 4125	n:4500000
Cons ci ratio: 1.589662e-01	ci left: 1.243708e-04	ci right 1.460588e-04	k: 607	n:4500000
KS ci ratio: 2.094777e-03	ci left: 4.371709e-01	ci right 4.380878e-01	k: 1969332	n:4500000
HTR3B   4500000 perm   9673 sec   (465 perm/sec)   p_kst 4.376293e-01   p_cons 1.348889e-04   p_joint 9.166667e-04

Joint ci ratio: 6.091777e-02	ci left: 8.893473e-04	ci right 9.454430e-04	k: 4136	n:4510000
Cons ci ratio: 1.588357e-01	ci left: 1.243079e-04	ci right 1.459655e-04	k: 608	n:4510000
KS ci ratio: 2.092420e-03	ci left: 4.371793e-01	ci right 4.380953e-01	k: 1973744	n:4510000
HTR3B   4510000 perm   9715 sec   (464 perm/sec)   p_kst 4.376373e-01   p_cons 1.348115e-04   p_joint 9.170732e-04

Joint ci ratio: 6.084427e-02	ci left: 8.895584e-04	ci right 9.455974e-04	k: 4146	n:4520000
Cons ci ratio: 1.588357e-01	ci left: 1.240329e-04	ci right 1.456425e-04	k: 608	n:4520000
KS ci ratio: 2.090136e-03	ci left: 4.371722e-01	ci right 4.380871e-01	k: 1978086	n:4520000
HTR3B   4520000 perm   9756 sec   (463 perm/sec)   p_kst 4.376296e-01   p_cons 1.345133e-04   p_joint 9.172566e-04

Joint ci ratio: 6.078567e-02	ci left: 8.893339e-04	ci right 9.453028e-04	k: 4154	n:4530000
Cons ci ratio: 1.585755e-01	ci left: 1.241831e-04	ci right 1.457800e-04	k: 610	n:4530000
KS ci ratio: 2.087840e-03	ci left: 4.371698e-01	ci right 4.380837e-01	k: 1982449	n:4530000
HTR3B   4530000 perm   9799 sec   (462 perm/sec)   p_kst 4.376267e-01   p_cons 1.346578e-04   p_joint 9.169978e-04

Joint ci ratio: 5.899381e-02	ci left: 9.429192e-04	ci right 1.000452e-03	k: 4410	n:4540000
Cons ci ratio: 1.580589e-01	ci left: 1.247557e-04	ci right 1.463749e-04	k: 614	n:4540000
KS ci ratio: 2.085578e-03	ci left: 4.371612e-01	ci right 4.380741e-01	k: 1986784	n:4540000
HTR3B   4540000 perm   9841 sec   (461 perm/sec)   p_kst 4.376176e-01   p_cons 1.352423e-04   p_joint 9.713656e-04

Joint ci ratio: 5.896711e-02	ci left: 9.417130e-04	ci right 9.991449e-04	k: 4414	n:4550000
Cons ci ratio: 1.580590e-01	ci left: 1.244815e-04	ci right 1.460532e-04	k: 614	n:4550000
KS ci ratio: 2.083315e-03	ci left: 4.371546e-01	ci right 4.380665e-01	k: 1991128	n:4550000
HTR3B   4550000 perm   9881 sec   (460 perm/sec)   p_kst 4.376105e-01   p_cons 1.349451e-04   p_joint 9.701099e-04

Joint ci ratio: 5.890044e-02	ci left: 9.418085e-04	ci right 9.991791e-04	k: 4424	n:4560000
Cons ci ratio: 1.578026e-01	ci left: 1.246298e-04	ci right 1.461888e-04	k: 616	n:4560000
KS ci ratio: 2.081055e-03	ci left: 4.371490e-01	ci right 4.380599e-01	k: 1995476	n:4560000
HTR3B   4560000 perm   9926 sec   (459 perm/sec)   p_kst 4.376044e-01   p_cons 1.350877e-04   p_joint 9.701754e-04

Joint ci ratio: 5.880746e-02	ci left: 9.427661e-04	ci right 1.000101e-03	k: 4438	n:4570000
Cons ci ratio: 1.571670e-01	ci left: 1.254081e-04	ci right 1.470061e-04	k: 621	n:4570000
KS ci ratio: 2.078816e-03	ci left: 4.371403e-01	ci right 4.380502e-01	k: 1999810	n:4570000
HTR3B   4570000 perm   9968 sec   (458 perm/sec)   p_kst 4.375952e-01   p_cons 1.358862e-04   p_joint 9.711160e-04

Joint ci ratio: 5.874133e-02	ci left: 9.428589e-04	ci right 1.000133e-03	k: 4448	n:4580000
Cons ci ratio: 1.569149e-01	ci left: 1.255538e-04	ci right 1.471389e-04	k: 623	n:4580000
KS ci ratio: 2.076559e-03	ci left: 4.371375e-01	ci right 4.380464e-01	k: 2004171	n:4580000
HTR3B   4580000 perm   10011 sec   (458 perm/sec)   p_kst 4.375919e-01   p_cons 1.360262e-04   p_joint 9.711790e-04

Joint ci ratio: 5.871498e-02	ci left: 9.416634e-04	ci right 9.988384e-04	k: 4452	n:4590000
Cons ci ratio: 1.569149e-01	ci left: 1.252802e-04	ci right 1.468184e-04	k: 623	n:4590000
KS ci ratio: 2.074303e-03	ci left: 4.371363e-01	ci right 4.380442e-01	k: 2008539	n:4590000
HTR3B   4590000 perm   10054 sec   (457 perm/sec)   p_kst 4.375902e-01   p_cons 1.357298e-04   p_joint 9.699346e-04

Joint ci ratio: 5.930451e-02	ci left: 9.207679e-04	ci right 9.772547e-04	k: 4364	n:4600000
Cons ci ratio: 1.564143e-01	ci left: 1.258434e-04	ci right 1.474028e-04	k: 627	n:4600000
KS ci ratio: 2.072060e-03	ci left: 4.371338e-01	ci right 4.380407e-01	k: 2012901	n:4600000
HTR3B   4600000 perm   10098 sec   (456 perm/sec)   p_kst 4.375872e-01   p_cons 1.363043e-04   p_joint 9.486957e-04

Joint ci ratio: 5.922992e-02	ci left: 9.211213e-04	ci right 9.775563e-04	k: 4375	n:4610000
Cons ci ratio: 1.562900e-01	ci left: 1.257788e-04	ci right 1.473085e-04	k: 628	n:4610000
KS ci ratio: 2.069758e-03	ci left: 4.371469e-01	ci right 4.380528e-01	k: 2017335	n:4610000
HTR3B   4610000 perm   10140 sec   (455 perm/sec)   p_kst 4.375998e-01   p_cons 1.362256e-04   p_joint 9.490239e-04

Joint ci ratio: 5.998947e-02	ci left: 8.956725e-04	ci right 9.512764e-04	k: 4265	n:4620000
Cons ci ratio: 1.560421e-01	ci left: 1.259225e-04	ci right 1.474394e-04	k: 630	n:4620000
KS ci ratio: 2.067528e-03	ci left: 4.371448e-01	ci right 4.380497e-01	k: 2021699	n:4620000
HTR3B   4620000 perm   10182 sec   (454 perm/sec)   p_kst 4.375972e-01   p_cons 1.363636e-04   p_joint 9.231602e-04

Joint ci ratio: 5.992629e-02	ci left: 8.956527e-04	ci right 9.511948e-04	k: 4274	n:4630000
Cons ci ratio: 1.559186e-01	ci left: 1.258581e-04	ci right 1.473454e-04	k: 631	n:4630000
KS ci ratio: 2.065254e-03	ci left: 4.371548e-01	ci right 4.380587e-01	k: 2026119	n:4630000
HTR3B   4630000 perm   10223 sec   (453 perm/sec)   p_kst 4.376067e-01   p_cons 1.362851e-04   p_joint 9.231102e-04

Joint ci ratio: 5.989830e-02	ci left: 8.945716e-04	ci right 9.500198e-04	k: 4278	n:4640000
Cons ci ratio: 1.559186e-01	ci left: 1.255869e-04	ci right 1.470278e-04	k: 631	n:4640000
KS ci ratio: 2.063073e-03	ci left: 4.371444e-01	ci right 4.380474e-01	k: 2030445	n:4640000
HTR3B   4640000 perm   10265 sec   (452 perm/sec)   p_kst 4.375959e-01   p_cons 1.359914e-04   p_joint 9.219828e-04

Joint ci ratio: 5.980750e-02	ci left: 8.954016e-04	ci right 9.508143e-04	k: 4291	n:4650000
Cons ci ratio: 1.556725e-01	ci left: 1.257301e-04	ci right 1.471585e-04	k: 633	n:4650000
KS ci ratio: 2.060890e-03	ci left: 4.371361e-01	ci right 4.380381e-01	k: 2034780	n:4650000
HTR3B   4650000 perm   10308 sec   (451 perm/sec)   p_kst 4.375871e-01   p_cons 1.361290e-04   p_joint 9.227957e-04

Joint ci ratio: 5.971710e-02	ci left: 8.962282e-04	ci right 9.516053e-04	k: 4304	n:4660000
Cons ci ratio: 1.553054e-01	ci left: 1.260791e-04	ci right 1.475115e-04	k: 636	n:4660000
KS ci ratio: 2.058623e-03	ci left: 4.371497e-01	ci right 4.380508e-01	k: 2039217	n:4660000
HTR3B   4660000 perm   10350 sec   (450 perm/sec)   p_kst 4.376002e-01   p_cons 1.364807e-04   p_joint 9.236052e-04

Joint ci ratio: 5.965478e-02	ci left: 8.962075e-04	ci right 9.515235e-04	k: 4313	n:4670000
Cons ci ratio: 1.549410e-01	ci left: 1.264266e-04	ci right 1.478630e-04	k: 639	n:4670000
KS ci ratio: 2.056441e-03	ci left: 4.371446e-01	ci right 4.380447e-01	k: 2043567	n:4670000
HTR3B   4670000 perm   10394 sec   (449 perm/sec)   p_kst 4.375946e-01   p_cons 1.368308e-04   p_joint 9.235546e-04

Joint ci ratio: 5.959265e-02	ci left: 8.961869e-04	ci right 9.514421e-04	k: 4322	n:4680000
Cons ci ratio: 1.546994e-01	ci left: 1.265672e-04	ci right 1.479909e-04	k: 641	n:4680000
KS ci ratio: 2.054179e-03	ci left: 4.371603e-01	ci right 4.380594e-01	k: 2048014	n:4680000
HTR3B   4680000 perm   10437 sec   (448 perm/sec)   p_kst 4.376098e-01   p_cons 1.369658e-04   p_joint 9.235043e-04

Joint ci ratio: 5.952384e-02	ci left: 8.963765e-04	ci right 9.515774e-04	k: 4332	n:4690000
Cons ci ratio: 1.545791e-01	ci left: 1.265023e-04	ci right 1.478968e-04	k: 642	n:4690000
KS ci ratio: 2.051961e-03	ci left: 4.371672e-01	ci right 4.380653e-01	k: 2052420	n:4690000
HTR3B   4690000 perm   10480 sec   (448 perm/sec)   p_kst 4.376162e-01   p_cons 1.368870e-04   p_joint 9.236674e-04

Joint ci ratio: 5.942788e-02	ci left: 8.974038e-04	ci right 9.525757e-04	k: 4346	n:4700000
Cons ci ratio: 1.544590e-01	ci left: 1.264377e-04	ci right 1.478031e-04	k: 643	n:4700000
KS ci ratio: 2.049792e-03	ci left: 4.371640e-01	ci right 4.380612e-01	k: 2056779	n:4700000
HTR3B   4700000 perm   10526 sec   (446 perm/sec)   p_kst 4.376126e-01   p_cons 1.368085e-04   p_joint 9.246809e-04

Joint ci ratio: 5.786352e-02	ci left: 9.452891e-04	ci right 1.001824e-03	k: 4584	n:4710000
Cons ci ratio: 1.542197e-01	ci left: 1.265775e-04	ci right 1.479303e-04	k: 645	n:4710000
KS ci ratio: 2.047557e-03	ci left: 4.371784e-01	ci right 4.380747e-01	k: 2061221	n:4710000
HTR3B   4710000 perm   10569 sec   (446 perm/sec)   p_kst 4.376265e-01   p_cons 1.369427e-04   p_joint 9.732484e-04

Joint ci ratio: 5.778794e-02	ci left: 9.457920e-04	ci right 1.002281e-03	k: 4596	n:4720000
Cons ci ratio: 1.541005e-01	ci left: 1.265130e-04	ci right 1.478370e-04	k: 646	n:4720000
KS ci ratio: 2.045354e-03	ci left: 4.371869e-01	ci right 4.380822e-01	k: 2065635	n:4720000
HTR3B   4720000 perm   10613 sec   (445 perm/sec)   p_kst 4.376345e-01   p_cons 1.368644e-04   p_joint 9.737288e-04

Joint ci ratio: 5.773773e-02	ci left: 9.454593e-04	ci right 1.001877e-03	k: 4604	n:4730000
Cons ci ratio: 1.539816e-01	ci left: 1.264488e-04	ci right 1.477440e-04	k: 647	n:4730000
KS ci ratio: 2.043209e-03	ci left: 4.371829e-01	ci right 4.380772e-01	k: 2069990	n:4730000
HTR3B   4730000 perm   10663 sec   (444 perm/sec)   p_kst 4.376300e-01   p_cons 1.367865e-04   p_joint 9.733615e-04

Joint ci ratio: 5.766888e-02	ci left: 9.457519e-04	ci right 1.002118e-03	k: 4615	n:4740000
Cons ci ratio: 1.538629e-01	ci left: 1.263849e-04	ci right 1.476514e-04	k: 648	n:4740000
KS ci ratio: 2.041097e-03	ci left: 4.371727e-01	ci right 4.380662e-01	k: 2074316	n:4740000
HTR3B   4740000 perm   10709 sec   (443 perm/sec)   p_kst 4.376194e-01   p_cons 1.367089e-04   p_joint 9.736287e-04

Joint ci ratio: 5.761275e-02	ci left: 9.456283e-04	ci right 1.001930e-03	k: 4624	n:4750000
Cons ci ratio: 1.538629e-01	ci left: 1.261188e-04	ci right 1.473405e-04	k: 648	n:4750000
KS ci ratio: 2.038947e-03	ci left: 4.371732e-01	ci right 4.380656e-01	k: 2078692	n:4750000
HTR3B   4750000 perm   10755 sec   (442 perm/sec)   p_kst 4.376194e-01   p_cons 1.364211e-04   p_joint 9.734737e-04

Joint ci ratio: 5.755057e-02	ci left: 9.457122e-04	ci right 1.001956e-03	k: 4634	n:4760000
Cons ci ratio: 1.533909e-01	ci left: 1.266619e-04	ci right 1.479036e-04	k: 652	n:4760000
KS ci ratio: 2.036816e-03	ci left: 4.371709e-01	ci right 4.380624e-01	k: 2083055	n:4760000
HTR3B   4760000 perm   10798 sec   (441 perm/sec)   p_kst 4.376166e-01   p_cons 1.369748e-04   p_joint 9.735294e-04

Joint ci ratio: 5.749478e-02	ci left: 9.455893e-04	ci right 1.001770e-03	k: 4643	n:4770000
Cons ci ratio: 1.530397e-01	ci left: 1.270012e-04	ci right 1.482466e-04	k: 655	n:4770000
KS ci ratio: 2.034686e-03	ci left: 4.371698e-01	ci right 4.380604e-01	k: 2087424	n:4770000
HTR3B   4770000 perm   10844 sec   (440 perm/sec)   p_kst 4.376151e-01   p_cons 1.373166e-04   p_joint 9.733753e-04

Joint ci ratio: 5.753826e-02	ci left: 9.421676e-04	ci right 9.981887e-04	k: 4636	n:4780000
Cons ci ratio: 1.529232e-01	ci left: 1.269367e-04	ci right 1.481536e-04	k: 656	n:4780000
KS ci ratio: 2.032552e-03	ci left: 4.371713e-01	ci right 4.380610e-01	k: 2091805	n:4780000
HTR3B   4780000 perm   10888 sec   (439 perm/sec)   p_kst 4.376161e-01   p_cons 1.372385e-04   p_joint 9.698745e-04

Joint ci ratio: 5.747013e-02	ci left: 9.424641e-04	ci right 9.984342e-04	k: 4647	n:4790000
Cons ci ratio: 1.529233e-01	ci left: 1.266717e-04	ci right 1.478443e-04	k: 656	n:4790000
KS ci ratio: 2.030474e-03	ci left: 4.371611e-01	ci right 4.380498e-01	k: 2096130	n:4790000
HTR3B   4790000 perm   10933 sec   (438 perm/sec)   p_kst 4.376054e-01   p_cons 1.369520e-04   p_joint 9.701461e-04

Joint ci ratio: 5.741457e-02	ci left: 9.423487e-04	ci right 9.982561e-04	k: 4656	n:4800000
Cons ci ratio: 1.524598e-01	ci left: 1.272093e-04	ci right 1.484015e-04	k: 660	n:4800000
KS ci ratio: 2.028362e-03	ci left: 4.371605e-01	ci right 4.380483e-01	k: 2100501	n:4800000
HTR3B   4800000 perm   10977 sec   (437 perm/sec)   p_kst 4.376044e-01   p_cons 1.375000e-04   p_joint 9.700000e-04

Joint ci ratio: 5.745787e-02	ci left: 9.389551e-04	ci right 9.947046e-04	k: 4649	n:4810000
Cons ci ratio: 1.522297e-01	ci left: 1.273447e-04	ci right 1.485246e-04	k: 662	n:4810000
KS ci ratio: 2.026269e-03	ci left: 4.371570e-01	ci right 4.380439e-01	k: 2104858	n:4810000
HTR3B   4810000 perm   11019 sec   (437 perm/sec)   p_kst 4.376004e-01   p_cons 1.376299e-04   p_joint 9.665281e-04

Joint ci ratio: 5.735923e-02	ci left: 9.402790e-04	ci right 9.960080e-04	k: 4665	n:4820000
Cons ci ratio: 1.518864e-01	ci left: 1.276793e-04	ci right 1.488625e-04	k: 665	n:4820000
KS ci ratio: 2.024257e-03	ci left: 4.371353e-01	ci right 4.380212e-01	k: 2109127	n:4820000
HTR3B   4820000 perm   11063 sec   (436 perm/sec)   p_kst 4.375782e-01   p_cons 1.379668e-04   p_joint 9.678423e-04

Joint ci ratio: 5.732241e-02	ci left: 9.395566e-04	ci right 9.952059e-04	k: 4671	n:4830000
Cons ci ratio: 1.517725e-01	ci left: 1.276141e-04	ci right 1.487692e-04	k: 666	n:4830000
KS ci ratio: 2.022117e-03	ci left: 4.371463e-01	ci right 4.380314e-01	k: 2113554	n:4830000
HTR3B   4830000 perm   11111 sec   (435 perm/sec)   p_kst 4.375888e-01   p_cons 1.378882e-04   p_joint 9.670807e-04

Joint ci ratio: 5.727953e-02	ci left: 9.390409e-04	ci right 9.946167e-04	k: 4678	n:4840000
Cons ci ratio: 1.515455e-01	ci left: 1.277480e-04	ci right 1.488907e-04	k: 668	n:4840000
KS ci ratio: 2.020047e-03	ci left: 4.371419e-01	ci right 4.380260e-01	k: 2117906	n:4840000
HTR3B   4840000 perm   11162 sec   (434 perm/sec)   p_kst 4.375839e-01   p_cons 1.380165e-04   p_joint 9.665289e-04

Joint ci ratio: 5.722453e-02	ci left: 9.389339e-04	ci right 9.944482e-04	k: 4687	n:4850000
Cons ci ratio: 1.514323e-01	ci left: 1.276829e-04	ci right 1.487977e-04	k: 669	n:4850000
KS ci ratio: 2.017921e-03	ci left: 4.371527e-01	ci right 4.380359e-01	k: 2122332	n:4850000
HTR3B   4850000 perm   11208 sec   (433 perm/sec)   p_kst 4.375942e-01   p_cons 1.379381e-04   p_joint 9.663918e-04

Joint ci ratio: 5.717577e-02	ci left: 9.386245e-04	ci right 9.940716e-04	k: 4695	n:4860000
Cons ci ratio: 1.513195e-01	ci left: 1.276182e-04	ci right 1.487051e-04	k: 670	n:4860000
KS ci ratio: 2.015885e-03	ci left: 4.371430e-01	ci right 4.380253e-01	k: 2126659	n:4860000
HTR3B   4860000 perm   11255 sec   (432 perm/sec)   p_kst 4.375842e-01   p_cons 1.378601e-04   p_joint 9.660494e-04

Joint ci ratio: 5.708465e-02	ci left: 9.397332e-04	ci right 9.951545e-04	k: 4710	n:4870000
Cons ci ratio: 1.510944e-01	ci left: 1.277513e-04	ci right 1.488259e-04	k: 672	n:4870000
KS ci ratio: 2.013774e-03	ci left: 4.371534e-01	ci right 4.380348e-01	k: 2131083	n:4870000
HTR3B   4870000 perm   11303 sec   (431 perm/sec)   p_kst 4.375940e-01   p_cons 1.379877e-04   p_joint 9.671458e-04

Joint ci ratio: 5.702415e-02	ci left: 9.398275e-04	ci right 9.951936e-04	k: 4720	n:4880000
Cons ci ratio: 1.509823e-01	ci left: 1.276867e-04	ci right 1.487336e-04	k: 673	n:4880000
KS ci ratio: 2.011709e-03	ci left: 4.371538e-01	ci right 4.380343e-01	k: 2135459	n:4880000
HTR3B   4880000 perm   11349 sec   (430 perm/sec)   p_kst 4.375941e-01   p_cons 1.379098e-04   p_joint 9.672131e-04

Joint ci ratio: 5.695181e-02	ci left: 9.403246e-04	ci right 9.956474e-04	k: 4732	n:4890000
Cons ci ratio: 1.507588e-01	ci left: 1.278191e-04	ci right 1.488539e-04	k: 675	n:4890000
KS ci ratio: 2.009600e-03	ci left: 4.371668e-01	ci right 4.380464e-01	k: 2139896	n:4890000
HTR3B   4890000 perm   11393 sec   (429 perm/sec)   p_kst 4.376065e-01   p_cons 1.380368e-04   p_joint 9.676892e-04

Joint ci ratio: 5.690975e-02	ci left: 9.398138e-04	ci right 9.950644e-04	k: 4739	n:4900000
Cons ci ratio: 1.507588e-01	ci left: 1.275583e-04	ci right 1.485501e-04	k: 675	n:4900000
KS ci ratio: 2.007582e-03	ci left: 4.371591e-01	ci right 4.380378e-01	k: 2144232	n:4900000
HTR3B   4900000 perm   11439 sec   (428 perm/sec)   p_kst 4.375984e-01   p_cons 1.377551e-04   p_joint 9.671429e-04

Joint ci ratio: 5.684382e-02	ci left: 9.401082e-04	ci right 9.953099e-04	k: 4750	n:4910000
Cons ci ratio: 1.505363e-01	ci left: 1.276904e-04	ci right 1.486702e-04	k: 677	n:4910000
KS ci ratio: 2.005459e-03	ci left: 4.371784e-01	ci right 4.380563e-01	k: 2148701	n:4910000
HTR3B   4910000 perm   11482 sec   (428 perm/sec)   p_kst 4.376173e-01   p_cons 1.378819e-04   p_joint 9.674134e-04

Joint ci ratio: 5.677813e-02	ci left: 9.404014e-04	ci right 9.955545e-04	k: 4761	n:4920000
Cons ci ratio: 1.502043e-01	ci left: 1.280177e-04	ci right 1.490007e-04	k: 680	n:4920000
KS ci ratio: 2.003365e-03	ci left: 4.371925e-01	ci right 4.380694e-01	k: 2153144	n:4920000
HTR3B   4920000 perm   11529 sec   (427 perm/sec)   p_kst 4.376309e-01   p_cons 1.382114e-04   p_joint 9.676829e-04

Joint ci ratio: 5.673050e-02	ci left: 9.400936e-04	ci right 9.951808e-04	k: 4769	n:4930000
Cons ci ratio: 1.502043e-01	ci left: 1.277580e-04	ci right 1.486985e-04	k: 680	n:4930000
KS ci ratio: 2.001301e-03	ci left: 4.372006e-01	ci right 4.380766e-01	k: 2157558	n:4930000
HTR3B   4930000 perm   11574 sec   (426 perm/sec)   p_kst 4.376385e-01   p_cons 1.379310e-04   p_joint 9.673428e-04

Joint ci ratio: 5.669488e-02	ci left: 9.393879e-04	ci right 9.943981e-04	k: 4775	n:4940000
Cons ci ratio: 1.502044e-01	ci left: 1.274994e-04	ci right 1.483975e-04	k: 680	n:4940000
KS ci ratio: 1.999244e-03	ci left: 4.372086e-01	ci right 4.380838e-01	k: 2161972	n:4940000
HTR3B   4940000 perm   11620 sec   (425 perm/sec)   p_kst 4.376462e-01   p_cons 1.376518e-04   p_joint 9.665992e-04

Joint ci ratio: 5.662377e-02	ci left: 9.398800e-04	ci right 9.948478e-04	k: 4787	n:4950000
Cons ci ratio: 1.499843e-01	ci left: 1.276307e-04	ci right 1.485169e-04	k: 682	n:4950000
KS ci ratio: 1.997238e-03	ci left: 4.372053e-01	ci right 4.380796e-01	k: 2166330	n:4950000
HTR3B   4950000 perm   11664 sec   (424 perm/sec)   p_kst 4.376424e-01   p_cons 1.377778e-04   p_joint 9.670707e-04

Joint ci ratio: 5.660017e-02	ci left: 9.387801e-04	ci right 9.936599e-04	k: 4791	n:4960000
Cons ci ratio: 1.498746e-01	ci left: 1.275674e-04	ci right 1.484267e-04	k: 683	n:4960000
KS ci ratio: 1.995274e-03	ci left: 4.371934e-01	ci right 4.380668e-01	k: 2170645	n:4960000
HTR3B   4960000 perm   11709 sec   (424 perm/sec)   p_kst 4.376300e-01   p_cons 1.377016e-04   p_joint 9.659274e-04

Joint ci ratio: 5.657069e-02	ci left: 9.378830e-04	ci right 9.926809e-04	k: 4796	n:4970000
Cons ci ratio: 1.497652e-01	ci left: 1.275044e-04	ci right 1.483368e-04	k: 684	n:4970000
KS ci ratio: 1.993238e-03	ci left: 4.372008e-01	ci right 4.380733e-01	k: 2175056	n:4970000
HTR3B   4970000 perm   11753 sec   (423 perm/sec)   p_kst 4.376370e-01   p_cons 1.376258e-04   p_joint 9.649899e-04

Joint ci ratio: 5.651770e-02	ci left: 9.377814e-04	ci right 9.925204e-04	k: 4805	n:4980000
Cons ci ratio: 1.495470e-01	ci left: 1.276350e-04	ci right 1.484555e-04	k: 686	n:4980000
KS ci ratio: 1.991254e-03	ci left: 4.371966e-01	ci right 4.380682e-01	k: 2179409	n:4980000
HTR3B   4980000 perm   11798 sec   (422 perm/sec)   p_kst 4.376323e-01   p_cons 1.377510e-04   p_joint 9.648594e-04

Joint ci ratio: 5.648247e-02	ci left: 9.370875e-04	ci right 9.917507e-04	k: 4811	n:4990000
Cons ci ratio: 1.494383e-01	ci left: 1.275721e-04	ci right 1.483659e-04	k: 687	n:4990000
KS ci ratio: 1.989256e-03	ci left: 4.371975e-01	ci right 4.380683e-01	k: 2183788	n:4990000
HTR3B   4990000 perm   11844 sec   (421 perm/sec)   p_kst 4.376329e-01   p_cons 1.376754e-04   p_joint 9.641283e-04

Joint ci ratio: 5.641802e-02	ci left: 9.373823e-04	ci right 9.919983e-04	k: 4822	n:5000000
Cons ci ratio: 1.493298e-01	ci left: 1.275095e-04	ci right 1.482767e-04	k: 688	n:5000000
KS ci ratio: 1.987235e-03	ci left: 4.372055e-01	ci right 4.380754e-01	k: 2188202	n:5000000
HTR3B   5000000 perm   11888 sec   (421 perm/sec)   p_kst 4.376404e-01   p_cons 1.376000e-04   p_joint 9.644000e-04

Outputting figure to mutsig2_images.part000000000082/HTR3B.6_1362_5000000_0.43764_0.0001376_0.0009644.png
                gene_name: HTR3B
               theta_stop: 0.15 
                    nperm: 5000000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.00014 
      ci_cons_bounds_left: 0.00013 
     ci_cons_bounds_right: 0.00015 
                  p_joint: 0.00096 
     ci_joint_bounds_left: 0.00094 
    ci_joint_bounds_right: 0.00099 

Current progress: 29 percent done.
IARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.274838e-02	ci left: 5.791816e-01	ci right 5.985666e-01	k: 5889	n:10000
Cons ci ratio: 5.031728e-02	ci left: 3.680851e-01	ci right 3.871862e-01	k: 3776	n:10000
KS ci ratio: 4.498665e-02	ci left: 4.217637e-01	ci right 4.412762e-01	k: 4315	n:10000
IARS   10000 perm   2 sec   (4317 perm/sec)   p_kst 4.315000e-01   p_cons 3.776000e-01   p_joint 5.889000e-01

Outputting figure to mutsig2_images.part000000000082/IARS.6_3921_10000_0.4315_0.3776_0.5889.png
                gene_name: IARS
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 30 percent done.
IARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.782306e-02	ci left: 5.079524e-01	ci right 5.276372e-01	k: 5178	n:10000
Cons ci ratio: 4.346137e-02	ci left: 4.387185e-01	ci right 4.583115e-01	k: 4485	n:10000
KS ci ratio: 5.486017e-02	ci left: 3.286278e-01	ci right 3.472667e-01	k: 3379	n:10000
IARS2   10000 perm   2 sec   (4678 perm/sec)   p_kst 3.379000e-01   p_cons 4.485000e-01   p_joint 5.178000e-01

Outputting figure to mutsig2_images.part000000000082/IARS2.6_3131_10000_0.3379_0.4485_0.5178.png
                gene_name: IARS2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 32 percent done.
HSPA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.247168e-02	ci left: 2.735913e-01	ci right 2.913356e-01	k: 2824	n:10000
Cons ci ratio: 4.597208e-02	ci left: 4.111978e-01	ci right 4.306483e-01	k: 4209	n:10000
KS ci ratio: 7.916568e-02	ci left: 1.890467e-01	ci right 2.047302e-01	k: 1968	n:10000
HSPA9   10000 perm   2 sec   (5777 perm/sec)   p_kst 1.968000e-01   p_cons 4.209000e-01   p_joint 2.824000e-01

Outputting figure to mutsig2_images.part000000000082/HSPA9.5_2108_10000_0.1968_0.4209_0.2824.png
                gene_name: HSPA9
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 34 percent done.
HTR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.474909e-02	ci left: 4.243561e-01	ci right 4.438824e-01	k: 4341	n:10000
Cons ci ratio: 3.292450e-02	ci left: 5.765733e-01	ci right 5.959764e-01	k: 5863	n:10000
KS ci ratio: 7.172305e-02	ci left: 2.216827e-01	ci right 2.382749e-01	k: 2299	n:10000
HTR1A   10000 perm   2 sec   (5992 perm/sec)   p_kst 2.299000e-01   p_cons 5.863000e-01   p_joint 4.341000e-01

Outputting figure to mutsig2_images.part000000000082/HTR1A.5_1273_10000_0.2299_0.5863_0.4341.png
                gene_name: HTR1A
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 36 percent done.
HTR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.207470e-02	ci left: 9.077165e-01	ci right 9.188414e-01	k: 9134	n:10000
Cons ci ratio: 1.911578e-02	ci left: 8.000395e-01	ci right 8.155808e-01	k: 8079	n:10000
KS ci ratio: 2.184721e-02	ci left: 7.545395e-01	ci right 7.713071e-01	k: 7630	n:10000
HTR1B   10000 perm   1 sec   (6827 perm/sec)   p_kst 7.630000e-01   p_cons 8.079000e-01   p_joint 9.134000e-01

Outputting figure to mutsig2_images.part000000000082/HTR1B.5_1177_10000_0.763_0.8079_0.9134.png
                gene_name: HTR1B
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 38 percent done.
HTR3E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.618240e-02	ci left: 5.300710e-01	ci right 5.497057e-01	k: 5399	n:10000
Cons ci ratio: 4.099081e-02	ci left: 4.677677e-01	ci right 4.874453e-01	k: 4776	n:10000
KS ci ratio: 4.504170e-02	ci left: 4.211655e-01	ci right 4.406747e-01	k: 4309	n:10000
HTR3E   10000 perm   2 sec   (5783 perm/sec)   p_kst 4.309000e-01   p_cons 4.776000e-01   p_joint 5.399000e-01

Outputting figure to mutsig2_images.part000000000082/HTR3E.5_1448_10000_0.4309_0.4776_0.5399.png
                gene_name: HTR3E
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 39 percent done.
HTR5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.735992e-02	ci left: 1.963361e-01	ci right 2.122365e-01	k: 2042	n:10000
Cons ci ratio: 4.827181e-02	ci left: 3.876902e-01	ci right 4.069696e-01	k: 3973	n:10000
KS ci ratio: 1.175954e-01	ci left: 9.408985e-02	ci right 1.059443e-01	k: 999	n:10000
HTR5A   10000 perm   2 sec   (6250 perm/sec)   p_kst 9.990000e-02   p_cons 3.973000e-01   p_joint 2.042000e-01

Joint ci ratio: 6.268436e-02	ci left: 1.583988e-01	ci right 1.686992e-01	k: 3270	n:20000
Cons ci ratio: 3.428317e-02	ci left: 3.884649e-01	ci right 4.020656e-01	k: 7905	n:20000
KS ci ratio: 8.231076e-02	ci left: 9.764233e-02	ci right 1.060738e-01	k: 2036	n:20000
HTR5A   20000 perm   4 sec   (5533 perm/sec)   p_kst 1.018000e-01   p_cons 3.952500e-01   p_joint 1.635000e-01

Outputting figure to mutsig2_images.part000000000082/HTR5A.5_1082_20000_0.1018_0.39525_0.1635.png
                gene_name: HTR5A
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 41 percent done.
ICA1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.828377e-02	ci left: 6.482049e-01	ci right 6.669033e-01	k: 6576	n:10000
Cons ci ratio: 2.339214e-02	ci left: 7.286569e-01	ci right 7.460046e-01	k: 7374	n:10000
KS ci ratio: 3.852581e-02	ci left: 4.987503e-01	ci right 5.184447e-01	k: 5086	n:10000
ICA1L   10000 perm   2 sec   (6133 perm/sec)   p_kst 5.086000e-01   p_cons 7.374000e-01   p_joint 6.576000e-01

Outputting figure to mutsig2_images.part000000000082/ICA1L.5_1511_10000_0.5086_0.7374_0.6576.png
                gene_name: ICA1L
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 43 percent done.
HSPA4L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.783297e-02	ci left: 6.554508e-01	ci right 6.740531e-01	k: 6648	n:10000
KS ci ratio: 7.136961e-03	ci left: 9.643613e-01	ci right 9.713627e-01	k: 9680	n:10000
HSPA4L   10000 perm   2 sec   (5221 perm/sec)   p_kst 9.680000e-01   p_cons 6.648000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HSPA4L.4_2596_10000_0.968_0.6648_1.png
                gene_name: HSPA4L
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
HSPA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.111979e-01	ci left: 2.977507e-02	ci right 3.690017e-02	k: 332	n:10000
Cons ci ratio: 1.773010e-01	ci left: 4.245560e-02	ci right 5.081107e-02	k: 465	n:10000
KS ci ratio: 1.072707e-01	ci left: 1.114460e-01	ci right 1.241776e-01	k: 1177	n:10000
HSPA8   10000 perm   2 sec   (5602 perm/sec)   p_kst 1.177000e-01   p_cons 4.650000e-02   p_joint 3.320000e-02

Joint ci ratio: 1.298188e-01	ci left: 4.076302e-02	ci right 4.647062e-02	k: 871	n:20000
Cons ci ratio: 1.243277e-01	ci left: 4.439900e-02	ci right 5.033349e-02	k: 946	n:20000
KS ci ratio: 7.213646e-02	ci left: 1.239898e-01	ci right 1.333184e-01	k: 2572	n:20000
HSPA8   20000 perm   4 sec   (5013 perm/sec)   p_kst 1.286000e-01   p_cons 4.730000e-02   p_joint 4.355000e-02

Joint ci ratio: 6.499652e-02	ci left: 1.046078e-01	ci right 1.116683e-01	k: 3243	n:30000
Cons ci ratio: 1.025990e-01	ci left: 4.401455e-02	ci right 4.880712e-02	k: 1391	n:30000
KS ci ratio: 5.942636e-02	ci left: 1.228897e-01	ci right 1.304494e-01	k: 3799	n:30000
HSPA8   30000 perm   6 sec   (4851 perm/sec)   p_kst 1.266333e-01   p_cons 4.636667e-02   p_joint 1.081000e-01

Joint ci ratio: 8.215583e-02	ci left: 5.163341e-02	ci right 5.608164e-02	k: 2153	n:40000
Cons ci ratio: 8.774390e-02	ci left: 4.543593e-02	ci right 4.963007e-02	k: 1900	n:40000
KS ci ratio: 5.166748e-02	ci left: 1.225402e-01	ci right 1.290643e-01	k: 5031	n:40000
HSPA8   40000 perm   8 sec   (4720 perm/sec)   p_kst 1.257750e-01   p_cons 4.750000e-02   p_joint 5.382500e-02

Outputting figure to mutsig2_images.part000000000082/HSPA8.4_1973_40000_0.12577_0.0475_0.053825.png
                gene_name: HSPA8
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 46 percent done.
HUNK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.181638e-02	ci left: 3.544610e-01	ci right 3.734183e-01	k: 3639	n:10000
KS ci ratio: 2.382108e-02	ci left: 7.214854e-01	ci right 7.389803e-01	k: 7303	n:10000
HUNK   10000 perm   2 sec   (5368 perm/sec)   p_kst 7.303000e-01   p_cons 3.639000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HUNK.4_2189_10000_0.7303_0.3639_1.png
                gene_name: HUNK
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
HYAL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.324248e-02	ci left: 1.738909e-01	ci right 1.890951e-01	k: 1814	n:10000
Cons ci ratio: 1.389693e-02	ci left: 8.820651e-01	ci right 8.945077e-01	k: 8884	n:10000
KS ci ratio: 1.375610e-01	ci left: 6.991195e-02	ci right 8.033717e-02	k: 750	n:10000
HYAL4   10000 perm   2 sec   (5844 perm/sec)   p_kst 7.500000e-02   p_cons 8.884000e-01   p_joint 1.814000e-01

Joint ci ratio: 5.840073e-02	ci left: 1.784534e-01	ci right 1.892387e-01	k: 3676	n:20000
Cons ci ratio: 1.038407e-02	ci left: 8.723175e-01	ci right 8.814726e-01	k: 17539	n:20000
KS ci ratio: 1.003010e-01	ci left: 6.738054e-02	ci right 7.454480e-02	k: 1418	n:20000
HYAL4   20000 perm   4 sec   (5078 perm/sec)   p_kst 7.090000e-02   p_cons 8.769500e-01   p_joint 1.838000e-01

Joint ci ratio: 4.971424e-02	ci left: 1.673818e-01	ci right 1.759485e-01	k: 5149	n:30000
Cons ci ratio: 8.536436e-03	ci left: 8.716772e-01	ci right 8.791832e-01	k: 26264	n:30000
KS ci ratio: 8.223961e-02	ci left: 6.749752e-02	ci right 7.331934e-02	k: 2111	n:30000
HYAL4   30000 perm   6 sec   (4857 perm/sec)   p_kst 7.036667e-02   p_cons 8.754667e-01   p_joint 1.716333e-01

Outputting figure to mutsig2_images.part000000000082/HYAL4.4_1458_30000_0.070367_0.87547_0.17163.png
                gene_name: HYAL4
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 50 percent done.
ICA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.004742e-01	ci left: 1.254236e-01	ci right 1.387915e-01	k: 1320	n:10000
Cons ci ratio: 1.372829e-02	ci left: 8.845229e-01	ci right 8.968485e-01	k: 8908	n:10000
KS ci ratio: 1.497797e-01	ci left: 5.928045e-02	ci right 6.897537e-02	k: 640	n:10000
ICA1   10000 perm   2 sec   (6218 perm/sec)   p_kst 6.400000e-02   p_cons 8.908000e-01   p_joint 1.320000e-01

Joint ci ratio: 8.565064e-02	ci left: 9.072523e-02	ci right 9.889301e-02	k: 1895	n:20000
Cons ci ratio: 9.538260e-03	ci left: 8.898039e-01	ci right 8.983812e-01	k: 17883	n:20000
KS ci ratio: 1.092757e-01	ci left: 5.713750e-02	ci right 6.379100e-02	k: 1208	n:20000
ICA1   20000 perm   4 sec   (5403 perm/sec)   p_kst 6.040000e-02   p_cons 8.941500e-01   p_joint 9.475000e-02

Joint ci ratio: 6.057253e-02	ci left: 1.187771e-01	ci right 1.262295e-01	k: 3674	n:30000
Cons ci ratio: 8.166991e-03	ci left: 8.811333e-01	ci right 8.883920e-01	k: 26544	n:30000
KS ci ratio: 8.853736e-02	ci left: 5.861147e-02	ci right 6.407386e-02	k: 1839	n:30000
ICA1   30000 perm   6 sec   (5123 perm/sec)   p_kst 6.130000e-02   p_cons 8.848000e-01   p_joint 1.224667e-01

Outputting figure to mutsig2_images.part000000000082/ICA1.4_1504_30000_0.0613_0.8848_0.12247.png
                gene_name: ICA1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 52 percent done.
IDH3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.012596e-02	ci left: 7.833022e-01	ci right 7.993277e-01	k: 7914	n:10000
Cons ci ratio: 4.976527e-02	ci left: 3.732585e-01	ci right 3.924098e-01	k: 3828	n:10000
KS ci ratio: 2.349480e-02	ci left: 7.269395e-01	ci right 7.443230e-01	k: 7357	n:10000
IDH3A   10000 perm   2 sec   (6447 perm/sec)   p_kst 7.357000e-01   p_cons 3.828000e-01   p_joint 7.914000e-01

Outputting figure to mutsig2_images.part000000000082/IDH3A.4_1145_10000_0.7357_0.3828_0.7914.png
                gene_name: IDH3A
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 54 percent done.
HSPA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.398202e-02	ci left: 2.110256e-01	ci right 2.273383e-01	k: 2191	n:10000
Cons ci ratio: 2.394806e-02	ci left: 7.193647e-01	ci right 7.369022e-01	k: 7282	n:10000
KS ci ratio: 1.539269e-01	ci left: 5.619485e-02	ci right 6.566293e-02	k: 608	n:10000
HSPA6   10000 perm   2 sec   (5519 perm/sec)   p_kst 6.080000e-02   p_cons 7.282000e-01   p_joint 2.191000e-01

Joint ci ratio: 5.231376e-02	ci left: 2.134331e-01	ci right 2.249487e-01	k: 4383	n:20000
Cons ci ratio: 1.692772e-02	ci left: 7.221275e-01	ci right 7.345061e-01	k: 14567	n:20000
KS ci ratio: 1.113996e-01	ci left: 5.504340e-02	ci right 6.158575e-02	k: 1165	n:20000
HSPA6   20000 perm   4 sec   (4963 perm/sec)   p_kst 5.825000e-02   p_cons 7.283500e-01   p_joint 2.191500e-01

Joint ci ratio: 5.286268e-02	ci left: 1.507897e-01	ci right 1.590105e-01	k: 4646	n:30000
Cons ci ratio: 1.332095e-02	ci left: 7.377133e-01	ci right 7.476397e-01	k: 22281	n:30000
KS ci ratio: 9.112414e-02	ci left: 5.544646e-02	ci right 6.077285e-02	k: 1742	n:30000
HSPA6   30000 perm   6 sec   (4718 perm/sec)   p_kst 5.806667e-02   p_cons 7.427000e-01   p_joint 1.548667e-01

Outputting figure to mutsig2_images.part000000000082/HSPA6.3_1936_30000_0.058067_0.7427_0.15487.png
                gene_name: HSPA6
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 55 percent done.
HSPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.954424e-02	ci left: 6.281901e-01	ci right 6.471296e-01	k: 6377	n:10000
Cons ci ratio: 6.929979e-02	ci left: 2.339280e-01	ci right 2.508223e-01	k: 2423	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
HSPH1   10000 perm   2 sec   (5412 perm/sec)   p_kst 1   p_cons 2.423000e-01   p_joint 6.377000e-01

Outputting figure to mutsig2_images.part000000000082/HSPH1.3_2649_10000_1_0.2423_0.6377.png
                gene_name: HSPH1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 57 percent done.
HTR2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.441962e-02	ci left: 5.548147e-01	ci right 5.743477e-01	k: 5646	n:10000
Cons ci ratio: 7.398202e-02	ci left: 2.110256e-01	ci right 2.273383e-01	k: 2191	n:10000
KS ci ratio: 1.831749e-02	ci left: 8.131401e-01	ci right 8.282726e-01	k: 8208	n:10000
HTR2A   10000 perm   1 sec   (6696 perm/sec)   p_kst 8.208000e-01   p_cons 2.191000e-01   p_joint 5.646000e-01

Outputting figure to mutsig2_images.part000000000082/HTR2A.3_1592_10000_0.8208_0.2191_0.5646.png
                gene_name: HTR2A
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 59 percent done.
HTR3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.073529e-02	ci left: 9.251327e-01	ci right 9.352150e-01	k: 9303	n:10000
KS ci ratio: 5.541190e-03	ci left: 9.775957e-01	ci right 9.831195e-01	k: 9805	n:10000
HTR3C   10000 perm   2 sec   (6140 perm/sec)   p_kst 9.805000e-01   p_cons 9.303000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HTR3C.3_1380_10000_0.9805_0.9303_1.png
                gene_name: HTR3C
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
HTR3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.227834e-02	ci left: 3.503853e-01	ci right 3.692964e-01	k: 3598	n:10000
Cons ci ratio: 4.785116e-02	ci left: 3.918721e-01	ci right 4.111853e-01	k: 4015	n:10000
KS ci ratio: 8.435169e-02	ci left: 1.700559e-01	ci right 1.851324e-01	k: 1775	n:10000
HTR3D   10000 perm   2 sec   (6509 perm/sec)   p_kst 1.775000e-01   p_cons 4.015000e-01   p_joint 3.598000e-01

Outputting figure to mutsig2_images.part000000000082/HTR3D.3_1567_10000_0.1775_0.4015_0.3598.png
                gene_name: HTR3D
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 62 percent done.
HTR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.619358e-02	ci left: 6.821411e-01	ci right 7.003474e-01	k: 6913	n:10000
Cons ci ratio: 3.861839e-02	ci left: 4.975503e-01	ci right 5.172454e-01	k: 5074	n:10000
KS ci ratio: 2.457181e-02	ci left: 7.089672e-01	ci right 7.267058e-01	k: 7179	n:10000
HTR4   10000 perm   2 sec   (5797 perm/sec)   p_kst 7.179000e-01   p_cons 5.074000e-01   p_joint 6.913000e-01

Outputting figure to mutsig2_images.part000000000082/HTR4.3_1487_10000_0.7179_0.5074_0.6913.png
                gene_name: HTR4
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 64 percent done.
HTRA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.416858e-02	ci left: 8.780732e-01	ci right 8.907019e-01	k: 8845	n:10000
KS ci ratio: 1.058573e-02	ci left: 9.269922e-01	ci right 9.369544e-01	k: 9321	n:10000
HTRA2   10000 perm   2 sec   (6014 perm/sec)   p_kst 9.321000e-01   p_cons 8.845000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HTRA2.3_1409_10000_0.9321_0.8845_1.png
                gene_name: HTRA2
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
HVCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.302908e-01	ci left: 7.756782e-02	ci right 8.847654e-02	k: 829	n:10000
Cons ci ratio: 1.831486e-01	ci left: 3.977673e-02	ci right 4.789171e-02	k: 437	n:10000
KS ci ratio: 4.489509e-02	ci left: 4.227607e-01	ci right 4.422786e-01	k: 4325	n:10000
HVCN1   10000 perm   1 sec   (7037 perm/sec)   p_kst 4.325000e-01   p_cons 4.370000e-02   p_joint 8.290000e-02

Joint ci ratio: 7.385945e-02	ci left: 1.188718e-01	ci right 1.280380e-01	k: 2468	n:20000
Cons ci ratio: 1.281378e-01	ci left: 4.182901e-02	ci right 4.760429e-02	k: 893	n:20000
KS ci ratio: 3.182292e-02	ci left: 4.244715e-01	ci right 4.382485e-01	k: 8627	n:20000
HVCN1   20000 perm   3 sec   (6185 perm/sec)   p_kst 4.313500e-01   p_cons 4.465000e-02   p_joint 1.234000e-01

Joint ci ratio: 9.071046e-02	ci left: 5.593575e-02	ci right 6.128346e-02	k: 1757	n:30000
Cons ci ratio: 1.041784e-01	ci left: 4.271417e-02	ci right 4.744110e-02	k: 1351	n:30000
KS ci ratio: 2.607165e-02	ci left: 4.240886e-01	ci right 4.353250e-01	k: 12891	n:30000
HVCN1   30000 perm   5 sec   (5862 perm/sec)   p_kst 4.297000e-01   p_cons 4.503333e-02   p_joint 5.856667e-02

Joint ci ratio: 5.798934e-02	ci left: 9.954410e-02	ci right 1.055137e-01	k: 4100	n:40000
Cons ci ratio: 9.044941e-02	ci left: 4.281783e-02	ci right 4.689857e-02	k: 1793	n:40000
KS ci ratio: 2.246655e-02	ci left: 4.272880e-01	ci right 4.370219e-01	k: 17286	n:40000
HVCN1   40000 perm   7 sec   (5655 perm/sec)   p_kst 4.321500e-01   p_cons 4.482500e-02   p_joint 1.025000e-01

Outputting figure to mutsig2_images.part000000000082/HVCN1.3_846_40000_0.43215_0.044825_0.1025.png
                gene_name: HVCN1
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.100 
    ci_joint_bounds_right: 0.11 

Current progress: 68 percent done.
HYLS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.533157e-02	ci left: 5.418888e-01	ci right 5.614810e-01	k: 5517	n:10000
Cons ci ratio: 4.958674e-02	ci left: 3.749500e-01	ci right 3.941173e-01	k: 3845	n:10000
KS ci ratio: 4.436868e-02	ci left: 4.285442e-01	ci right 4.480917e-01	k: 4383	n:10000
HYLS1   10000 perm   1 sec   (7118 perm/sec)   p_kst 4.383000e-01   p_cons 3.845000e-01   p_joint 5.517000e-01

Outputting figure to mutsig2_images.part000000000082/HYLS1.3_904_10000_0.4383_0.3845_0.5517.png
                gene_name: HYLS1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 70 percent done.
IBSP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.575879e-02	ci left: 6.892979e-01	ci right 7.073865e-01	k: 6984	n:10000
KS ci ratio: 3.027713e-02	ci left: 6.167323e-01	ci right 6.357941e-01	k: 6263	n:10000
IBSP   10000 perm   2 sec   (6393 perm/sec)   p_kst 6.263000e-01   p_cons 6.984000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/IBSP.3_978_10000_0.6263_0.6984_1.png
                gene_name: IBSP
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
ICAM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.757859e-02	ci left: 8.251362e-01	ci right 8.398695e-01	k: 8326	n:10000
KS ci ratio: 2.070962e-02	ci left: 7.735734e-01	ci right 7.898622e-01	k: 7818	n:10000
ICAM4   10000 perm   2 sec   (6356 perm/sec)   p_kst 7.818000e-01   p_cons 8.326000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/ICAM4.3_925_10000_0.7818_0.8326_1.png
                gene_name: ICAM4
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
ICAM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.095497e-01	ci left: 1.072486e-01	ci right 1.197776e-01	k: 1134	n:10000
Cons ci ratio: 2.624881e-02	ci left: 6.812340e-01	ci right 6.994550e-01	k: 6904	n:10000
KS ci ratio: 2.998689e-01	ci left: 1.427992e-02	ci right 1.940710e-02	k: 167	n:10000
ICAM5   10000 perm   2 sec   (5320 perm/sec)   p_kst 1.670000e-02   p_cons 6.904000e-01   p_joint 1.134000e-01

Joint ci ratio: 1.009921e-01	ci left: 6.650160e-02	ci right 7.362401e-02	k: 1400	n:20000
Cons ci ratio: 1.967059e-02	ci left: 6.584603e-01	ci right 6.715917e-01	k: 13301	n:20000
KS ci ratio: 2.076863e-01	ci left: 1.568069e-02	ci right 1.936149e-02	k: 349	n:20000
ICAM5   20000 perm   4 sec   (4753 perm/sec)   p_kst 1.745000e-02   p_cons 6.650500e-01   p_joint 7.000000e-02

Joint ci ratio: 9.109640e-02	ci left: 5.547908e-02	ci right 6.080689e-02	k: 1743	n:30000
Cons ci ratio: 1.606899e-02	ci left: 6.594593e-01	ci right 6.701755e-01	k: 19945	n:30000
KS ci ratio: 1.673200e-01	ci left: 1.646177e-02	ci right 1.949927e-02	k: 538	n:30000
ICAM5   30000 perm   7 sec   (4535 perm/sec)   p_kst 1.793333e-02   p_cons 6.648333e-01   p_joint 5.810000e-02

Joint ci ratio: 7.949883e-02	ci left: 5.501754e-02	ci right 5.959699e-02	k: 2291	n:40000
Cons ci ratio: 1.381982e-02	ci left: 6.632851e-01	ci right 6.725405e-01	k: 26717	n:40000
KS ci ratio: 1.453853e-01	ci left: 1.655093e-02	ci right 1.916973e-02	k: 713	n:40000
ICAM5   40000 perm   9 sec   (4388 perm/sec)   p_kst 1.782500e-02   p_cons 6.679250e-01   p_joint 5.727500e-02

Joint ci ratio: 6.599040e-02	ci left: 6.374053e-02	ci right 6.811003e-02	k: 3295	n:50000
Cons ci ratio: 1.236045e-02	ci left: 6.637923e-01	ci right 6.720682e-01	k: 33397	n:50000
KS ci ratio: 1.301483e-01	ci left: 1.665909e-02	ci right 1.899737e-02	k: 890	n:50000
ICAM5   50000 perm   12 sec   (4271 perm/sec)   p_kst 1.780000e-02   p_cons 6.679400e-01   p_joint 6.590000e-02

Joint ci ratio: 6.709118e-02	ci left: 5.202436e-02	ci right 5.565228e-02	k: 3229	n:60000
Cons ci ratio: 1.127436e-02	ci left: 6.645163e-01	ci right 6.720674e-01	k: 40098	n:60000
KS ci ratio: 1.191611e-01	ci left: 1.665997e-02	ci right 1.878704e-02	k: 1062	n:60000
ICAM5   60000 perm   14 sec   (4175 perm/sec)   p_kst 1.770000e-02   p_cons 6.683000e-01   p_joint 5.381667e-02

Joint ci ratio: 6.926181e-02	ci left: 4.223956e-02	ci right 4.528412e-02	k: 3062	n:70000
Cons ci ratio: 1.044444e-02	ci left: 6.645260e-01	ci right 6.715173e-01	k: 46762	n:70000
KS ci ratio: 1.109228e-01	ci left: 1.655542e-02	ci right 1.851343e-02	k: 1226	n:70000
ICAM5   70000 perm   17 sec   (4087 perm/sec)   p_kst 1.751429e-02   p_cons 6.680286e-01   p_joint 4.374286e-02

Joint ci ratio: 6.800677e-02	ci left: 3.851729e-02	ci right 4.124120e-02	k: 3189	n:80000
Cons ci ratio: 9.764192e-03	ci left: 6.650126e-01	ci right 6.715502e-01	k: 53463	n:80000
KS ci ratio: 1.046467e-01	ci left: 1.633470e-02	ci right 1.815055e-02	k: 1378	n:80000
ICAM5   80000 perm   20 sec   (4007 perm/sec)   p_kst 1.722500e-02   p_cons 6.682875e-01   p_joint 3.986250e-02

Joint ci ratio: 5.498405e-02	ci left: 5.198386e-02	ci right 5.493389e-02	k: 4810	n:90000
Cons ci ratio: 9.208517e-03	ci left: 6.650683e-01	ci right 6.712320e-01	k: 60134	n:90000
KS ci ratio: 9.841612e-02	ci left: 1.646903e-02	ci right 1.818451e-02	k: 1558	n:90000
ICAM5   90000 perm   23 sec   (3934 perm/sec)   p_kst 1.731111e-02   p_cons 6.681556e-01   p_joint 5.344444e-02

Outputting figure to mutsig2_images.part000000000082/ICAM5.3_2819_90000_0.017311_0.66816_0.053444.png
                gene_name: ICAM5
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.055 

Current progress: 75 percent done.
ICK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.708704e-02	ci left: 6.675328e-01	ci right 6.859641e-01	k: 6768	n:10000
Cons ci ratio: 1.909115e-02	ci left: 8.004455e-01	ci right 8.159745e-01	k: 8083	n:10000
KS ci ratio: 3.371106e-02	ci left: 5.650398e-01	ci right 5.845166e-01	k: 5748	n:10000
ICK   10000 perm   2 sec   (5975 perm/sec)   p_kst 5.748000e-01   p_cons 8.083000e-01   p_joint 6.768000e-01

Outputting figure to mutsig2_images.part000000000082/ICK.3_1951_10000_0.5748_0.8083_0.6768.png
                gene_name: ICK
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 77 percent done.
IDH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.580278e-02	ci left: 4.129917e-01	ci right 4.324533e-01	k: 4227	n:10000
Cons ci ratio: 4.072890e-02	ci left: 4.709642e-01	ci right 4.906470e-01	k: 4808	n:10000
KS ci ratio: 6.083299e-02	ci left: 2.843880e-01	ci right 3.023325e-01	k: 2933	n:10000
IDH1   10000 perm   2 sec   (5977 perm/sec)   p_kst 2.933000e-01   p_cons 4.808000e-01   p_joint 4.227000e-01

Outputting figure to mutsig2_images.part000000000082/IDH1.3_1277_10000_0.2933_0.4808_0.4227.png
                gene_name: IDH1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 79 percent done.
HSPA13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.761910e-02	ci left: 5.106536e-01	ci right 5.303344e-01	k: 5205	n:10000
KS ci ratio: 3.145295e-03	ci left: 9.919467e-01	ci right 9.951556e-01	k: 9937	n:10000
HSPA13   10000 perm   2 sec   (6246 perm/sec)   p_kst 9.937000e-01   p_cons 5.205000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HSPA13.2_1436_10000_0.9937_0.5205_1.png
                gene_name: HSPA13
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 1.00 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
HSPA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.416833e-02	ci left: 5.584231e-01	ci right 5.779372e-01	k: 5682	n:10000
KS ci ratio: 4.949261e-02	ci left: 3.758456e-01	ci right 3.950212e-01	k: 3854	n:10000
HSPA2   10000 perm   2 sec   (6155 perm/sec)   p_kst 3.854000e-01   p_cons 5.682000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HSPA2.2_1924_10000_0.3854_0.5682_1.png
                gene_name: HSPA2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
HSPB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.433571e-02	ci left: 5.560174e-01	ci right 5.755442e-01	k: 5658	n:10000
Cons ci ratio: 5.490924e-02	ci left: 3.282306e-01	ci right 3.468641e-01	k: 3375	n:10000
KS ci ratio: 2.481456e-02	ci left: 7.049308e-01	ci right 7.227445e-01	k: 7139	n:10000
HSPB2   10000 perm   1 sec   (7060 perm/sec)   p_kst 7.139000e-01   p_cons 3.375000e-01   p_joint 5.658000e-01

Outputting figure to mutsig2_images.part000000000082/HSPB2.2_557_10000_0.7139_0.3375_0.5658.png
                gene_name: HSPB2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 84 percent done.
HSPB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.657893e-02	ci left: 8.411177e-01	ci right 8.552788e-01	k: 8483	n:10000
KS ci ratio: 4.574653e-02	ci left: 4.135897e-01	ci right 4.330550e-01	k: 4233	n:10000
HSPB3   10000 perm   2 sec   (6597 perm/sec)   p_kst 4.233000e-01   p_cons 8.483000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HSPB3.2_457_10000_0.4233_0.8483_1.png
                gene_name: HSPB3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
HSPBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.745238e-02	ci left: 8.271707e-01	ci right 8.418339e-01	k: 8346	n:10000
KS ci ratio: 1.717671e-01	ci left: 4.523448e-02	ci right 5.383036e-02	k: 494	n:10000
HSPBP1   10000 perm   1 sec   (6705 perm/sec)   p_kst 4.940000e-02   p_cons 8.346000e-01   p_joint 1

Joint ci ratio: 6.459499e-02	ci left: 1.504538e-01	ci right 1.605466e-01	k: 3109	n:20000
Cons ci ratio: 1.231554e-02	ci left: 8.299340e-01	ci right 8.402683e-01	k: 16703	n:20000
KS ci ratio: 1.219146e-01	ci left: 4.614611e-02	ci right 5.218582e-02	k: 982	n:20000
HSPBP1   20000 perm   3 sec   (5825 perm/sec)   p_kst 4.910000e-02   p_cons 8.351500e-01   p_joint 1.554500e-01

Joint ci ratio: 5.196578e-02	ci left: 1.552743e-01	ci right 1.635918e-01	k: 4782	n:30000
Cons ci ratio: 9.993915e-03	ci left: 8.326027e-01	ci right 8.409986e-01	k: 25105	n:30000
KS ci ratio: 9.844263e-02	ci left: 4.772353e-02	ci right 5.269737e-02	k: 1505	n:30000
HSPBP1   30000 perm   5 sec   (5494 perm/sec)   p_kst 5.016667e-02   p_cons 8.368333e-01   p_joint 1.594000e-01

Outputting figure to mutsig2_images.part000000000082/HSPBP1.2_1108_30000_0.050167_0.83683_0.1594.png
                gene_name: HSPBP1
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 88 percent done.
HSPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.977666e-01	ci left: 3.405205e-02	ci right 4.162024e-02	k: 377	n:10000
Cons ci ratio: 1.466274e-01	ci left: 6.179002e-02	ci right 7.166421e-02	k: 666	n:10000
KS ci ratio: 3.558222e-02	ci left: 5.383830e-01	ci right 5.579889e-01	k: 5482	n:10000
HSPD1   10000 perm   2 sec   (6271 perm/sec)   p_kst 5.482000e-01   p_cons 6.660000e-02   p_joint 3.770000e-02

Joint ci ratio: 1.387052e-01	ci left: 3.573081e-02	ci right 4.110445e-02	k: 767	n:20000
Cons ci ratio: 1.040180e-01	ci left: 6.284124e-02	ci right 6.978550e-02	k: 1325	n:20000
KS ci ratio: 2.552223e-02	ci left: 5.342134e-01	ci right 5.480746e-01	k: 10823	n:20000
HSPD1   20000 perm   4 sec   (5478 perm/sec)   p_kst 5.411500e-01   p_cons 6.625000e-02   p_joint 3.835000e-02

Joint ci ratio: 1.164992e-01	ci left: 3.424427e-02	ci right 3.851279e-02	k: 1090	n:30000
Cons ci ratio: 8.543815e-02	ci left: 6.275856e-02	ci right 6.839259e-02	k: 1966	n:30000
KS ci ratio: 2.095915e-02	ci left: 5.326385e-01	ci right 5.439540e-01	k: 16149	n:30000
HSPD1   30000 perm   6 sec   (5078 perm/sec)   p_kst 5.383000e-01   p_cons 6.553333e-02   p_joint 3.633333e-02

Joint ci ratio: 9.926255e-02	ci left: 3.565933e-02	ci right 3.940819e-02	k: 1500	n:40000
Cons ci ratio: 7.322788e-02	ci left: 6.439681e-02	ci right 6.931630e-02	k: 2673	n:40000
KS ci ratio: 1.811579e-02	ci left: 5.343750e-01	ci right 5.441693e-01	k: 21571	n:40000
HSPD1   40000 perm   8 sec   (4932 perm/sec)   p_kst 5.392750e-01   p_cons 6.682500e-02   p_joint 3.750000e-02

Outputting figure to mutsig2_images.part000000000082/HSPD1.2_1766_40000_0.53927_0.066825_0.0375.png
                gene_name: HSPD1
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 89 percent done.
HTATIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.115807e-02	ci left: 7.660785e-01	ci right 7.825614e-01	k: 7744	n:10000
KS ci ratio: 1.378463e-02	ci left: 8.837035e-01	ci right 8.960683e-01	k: 8900	n:10000
HTATIP2   10000 perm   1 sec   (6705 perm/sec)   p_kst 8.900000e-01   p_cons 7.744000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HTATIP2.2_954_10000_0.89_0.7744_1.png
                gene_name: HTATIP2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
HTATSF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.193174e-02	ci left: 7.531230e-01	ci right 7.699244e-01	k: 7616	n:10000
Cons ci ratio: 8.412142e-02	ci left: 1.708424e-01	ci right 1.859454e-01	k: 1783	n:10000
KS ci ratio: 1.866511e-02	ci left: 8.074513e-01	ci right 8.227647e-01	k: 8152	n:10000
HTATSF1   10000 perm   2 sec   (5870 perm/sec)   p_kst 8.152000e-01   p_cons 1.783000e-01   p_joint 7.616000e-01

Outputting figure to mutsig2_images.part000000000082/HTATSF1.2_2304_10000_0.8152_0.1783_0.7616.png
                gene_name: HTATSF1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 93 percent done.
HTR1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.332572e-02	ci left: 7.297682e-01	ci right 7.470927e-01	k: 7385	n:10000
Cons ci ratio: 4.689887e-02	ci left: 4.015330e-01	ci right 4.209187e-01	k: 4112	n:10000
KS ci ratio: 1.613229e-02	ci left: 8.481495e-01	ci right 8.620429e-01	k: 8552	n:10000
HTR1D   10000 perm   1 sec   (6938 perm/sec)   p_kst 8.552000e-01   p_cons 4.112000e-01   p_joint 7.385000e-01

Outputting figure to mutsig2_images.part000000000082/HTR1D.2_1138_10000_0.8552_0.4112_0.7385.png
                gene_name: HTR1D
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 95 percent done.
HTR1F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.020242e-02	ci left: 4.774582e-01	ci right 4.971492e-01	k: 4873	n:10000
KS ci ratio: 8.712888e-03	ci left: 9.486681e-01	ci right 9.570656e-01	k: 9530	n:10000
HTR1F   10000 perm   1 sec   (6916 perm/sec)   p_kst 9.530000e-01   p_cons 4.873000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/HTR1F.2_1105_10000_0.953_0.4873_1.png
                gene_name: HTR1F
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
IAH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.135169e-02	ci left: 7.628386e-01	ci right 7.794031e-01	k: 7712	n:10000
KS ci ratio: 2.423853e-02	ci left: 7.145185e-01	ci right 7.321512e-01	k: 7234	n:10000
IAH1   10000 perm   1 sec   (6927 perm/sec)   p_kst 7.234000e-01   p_cons 7.712000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000082/IAH1.2_771_10000_0.7234_0.7712_1.png
                gene_name: IAH1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
ICAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.033598e-02	ci left: 1.845176e-01	ci right 2.000620e-01	k: 1922	n:10000
Cons ci ratio: 1.178575e-01	ci left: 9.370045e-02	ci right 1.055340e-01	k: 995	n:10000
KS ci ratio: 1.434125e-02	ci left: 8.755155e-01	ci right 8.882611e-01	k: 8820	n:10000
ICAM1   10000 perm   2 sec   (6228 perm/sec)   p_kst 8.820000e-01   p_cons 9.950000e-02   p_joint 1.922000e-01

Joint ci ratio: 6.862754e-02	ci left: 1.354158e-01	ci right 1.450891e-01	k: 2804	n:20000
Cons ci ratio: 8.383109e-02	ci left: 9.440373e-02	ci right 1.027134e-01	k: 1970	n:20000
KS ci ratio: 1.015430e-02	ci left: 8.771435e-01	ci right 8.861452e-01	k: 17634	n:20000
ICAM1   20000 perm   4 sec   (5424 perm/sec)   p_kst 8.817000e-01   p_cons 9.850000e-02   p_joint 1.402000e-01

Outputting figure to mutsig2_images.part000000000082/ICAM1.2_1627_20000_0.8817_0.0985_0.1402.png
                gene_name: ICAM1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000082
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 82 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1552>
Subject: Job 9893972: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1552>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000083> was used as the working directory.
Started at Sat Oct  6 00:13:19 2012
Results reported at Sat Oct  6 00:23:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000083.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000083.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 83  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000083.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    699.96 sec.
    Max Memory :      3570 MB
    Max Swap   :      5899 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
83
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 83
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 83: processing genes 7393 - 7482
Calculating significance of each gene.
Using projection method.
7393	IDH3G	8.025397e-01
7394	IDI1	5.513433e-01
7395	IDI2	5.860523e-01
7396	IDO1	2.301568e-01
7397	IDO2	8.822034e-01
7398	IDS	5.831327e-01
7399	IDUA	8.537487e-01
7400	IER2	1
7401	IER3	1
7402	IER3IP1	1
7403	IER5	1
7404	IER5L	1
In gene IFFO1 the following bins exceed PROBCAP:
    READ-AG-3727	categ 6	N = 1593    n = 1	mu =   2.96e-07
7405	IFFO1	8.502915e-01
7406	IFI16	7.003073e-01
7407	IFI27	1
7408	IFI27L1	1
7409	IFI27L2	3.277963e-01
7410	IFI30	6.281142e-01
7411	IFI35	1.220699e-01
7412	IFI44	3.224003e-01
7413	IFI44L	5.765966e-01
7414	IFI6	1
7415	IFIH1	4.863038e-01
7416	IFIT1	3.533502e-02
7417	IFIT1B	2.882356e-01
7418	IFIT2	6.771467e-01
7419	IFIT3	2.947862e-01
7420	IFIT5	4.155870e-01
7421	IFITM1	3.092454e-01
7422	IFITM2	6.119124e-01
7423	IFITM3	1
7424	IFITM5	1
7425	IFLTD1	1.567102e-02
7426	IFNA1	3.500129e-01
7427	IFNA10	7.567374e-02
7428	IFNA13	3.221062e-01
7429	IFNA14	1
7430	IFNA16	2.325000e-02
7431	IFNA17	1
7432	IFNA2	1.808812e-02
7433	IFNA21	2.675473e-01
7434	IFNA4	2.315322e-01
In gene IFNA5 the following bins exceed PROBCAP:
    COAD-AA-3516	categ 6	N = 574     n = 1	mu =   2.17e-06
7435	IFNA5	2.567831e-01
7436	IFNA6	2.552703e-01
7437	IFNA7	5.118444e-01
7438	IFNA8	5.003469e-01
7439	IFNAR1	3.824638e-01
7440	IFNAR2	6.371561e-01
7441	IFNB1	2.784848e-01
7442	IFNE	3.295959e-01
7443	IFNG	5.054362e-01
7444	IFNGR1	4.540109e-01
7445	IFNGR2	5.670068e-01
7446	IFNK	5.137594e-01
7447	IFNW1	1
7448	IFRD1	1.218951e-01
7449	IFRD2	5.633638e-01
7450	IFT122	7.383973e-01
7451	IFT140	9.297020e-01
7452	IFT172	4.790718e-01
7453	IFT20	1
7454	IFT27	1
7455	IFT46	7.121805e-01
7456	IFT52	1
7457	IFT57	4.644721e-01
7458	IFT74	8.994094e-01
7459	IFT80	1.105192e-04
7460	IFT81	3.130542e-01
7461	IFT88	1.528964e-01
7462	IGBP1	3.432260e-01
7463	IGDCC3	5.988342e-02
7464	IGDCC4	4.216780e-01
7465	IGF1	3.072881e-01
7466	IGF1R	4.250313e-01
7467	IGF2	1
7468	IGF2BP1	2.990581e-01
7469	IGF2BP2	9.706923e-01
7470	IGF2BP3	3.992807e-01
7471	IGF2R	4.707644e-01
7472	IGFALS	1
7473	IGFBP1	6.421385e-01
7474	IGFBP2	5.096926e-01
7475	IGFBP3	1.402874e-03
7476	IGFBP4	1.379441e-01
7477	IGFBP5	5.099441e-01
7478	IGFBP6	1
7479	IGFBP7	1
7480	IGFBPL1	1
7481	IGFL1	1
7482	IGFL2	1
Done

Running MutSig 2:
Scatter job 83: processing genes 7393 - 7482
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
IGF2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.323079e-02	ci left: 5.720595e-01	ci right 5.914928e-01	k: 5818	n:10000
Cons ci ratio: 1.498783e-02	ci left: 8.658043e-01	ci right 8.789779e-01	k: 8725	n:10000
KS ci ratio: 4.164532e-02	ci left: 4.598782e-01	ci right 4.795394e-01	k: 4697	n:10000
IGF2R   10000 perm   4 sec   (2532 perm/sec)   p_kst 4.697000e-01   p_cons 8.725000e-01   p_joint 5.818000e-01

Outputting figure to mutsig2_images.part000000000083/IGF2R.19_7668_10000_0.4697_0.8725_0.5818.png
                gene_name: IGF2R
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 2 percent done.
IFT172
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.052060e-01	ci left: 1.154507e-01	ci right 1.283705e-01	k: 1218	n:10000
Cons ci ratio: 6.582365e-02	ci left: 2.531052e-01	ci right 2.704338e-01	k: 2617	n:10000
KS ci ratio: 1.089014e-01	ci left: 1.084196e-01	ci right 1.210058e-01	k: 1146	n:10000
IFT172   10000 perm   3 sec   (3454 perm/sec)   p_kst 1.146000e-01   p_cons 2.617000e-01   p_joint 1.218000e-01

Joint ci ratio: 7.796938e-02	ci left: 1.078084e-01	ci right 1.166047e-01	k: 2243	n:20000
Cons ci ratio: 4.637670e-02	ci left: 2.570570e-01	ci right 2.693119e-01	k: 5263	n:20000
KS ci ratio: 7.618347e-02	ci left: 1.124288e-01	ci right 1.213829e-01	k: 2337	n:20000
IFT172   20000 perm   6 sec   (3235 perm/sec)   p_kst 1.168500e-01   p_cons 2.631500e-01   p_joint 1.121500e-01

Outputting figure to mutsig2_images.part000000000083/IFT172.11_5442_20000_0.11685_0.26315_0.11215.png
                gene_name: IFT172
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 5 percent done.
IFT80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.099875e-01	ci left: 1.064680e-01	ci right 1.189587e-01	k: 1126	n:10000
Cons ci ratio: 3.753630e-02	ci left: 5.117542e-01	ci right 5.314332e-01	k: 5216	n:10000
KS ci ratio: 1.697915e-01	ci left: 4.628962e-02	ci right 5.497454e-02	k: 505	n:10000
IFT80   10000 perm   2 sec   (4368 perm/sec)   p_kst 5.050000e-02   p_cons 5.216000e-01   p_joint 1.126000e-01

Joint ci ratio: 8.923154e-02	ci left: 8.405991e-02	ci right 9.196034e-02	k: 1759	n:20000
Cons ci ratio: 2.679777e-02	ci left: 5.098974e-01	ci right 5.237977e-01	k: 10337	n:20000
KS ci ratio: 1.219146e-01	ci left: 4.614611e-02	ci right 5.218582e-02	k: 982	n:20000
IFT80   20000 perm   5 sec   (4013 perm/sec)   p_kst 4.910000e-02   p_cons 5.168500e-01   p_joint 8.795000e-02

Joint ci ratio: 7.001553e-02	ci left: 9.127818e-02	ci right 9.793390e-02	k: 2837	n:30000
Cons ci ratio: 2.175774e-02	ci left: 5.139948e-01	ci right 5.253347e-01	k: 15590	n:30000
KS ci ratio: 9.945493e-02	ci left: 4.677963e-02	ci right 5.170813e-02	k: 1476	n:30000
IFT80   30000 perm   8 sec   (3885 perm/sec)   p_kst 4.920000e-02   p_cons 5.196667e-01   p_joint 9.456667e-02

Outputting figure to mutsig2_images.part000000000083/IFT80.11_2410_30000_0.0492_0.51967_0.094567.png
                gene_name: IFT80
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.098 

Current progress: 7 percent done.
IGF1R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.693422e-02	ci left: 1.981098e-01	ci right 2.140618e-01	k: 2060	n:10000
Cons ci ratio: 7.306490e-02	ci left: 2.152677e-01	ci right 2.316936e-01	k: 2234	n:10000
KS ci ratio: 7.174331e-02	ci left: 2.215840e-01	ci right 2.381737e-01	k: 2298	n:10000
IGF1R   10000 perm   2 sec   (4542 perm/sec)   p_kst 2.298000e-01   p_cons 2.234000e-01   p_joint 2.060000e-01

Outputting figure to mutsig2_images.part000000000083/IGF1R.8_4188_10000_0.2298_0.2234_0.206.png
                gene_name: IGF1R
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 9 percent done.
IGF2BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.740117e-02	ci left: 5.135553e-01	ci right 5.332311e-01	k: 5234	n:10000
Cons ci ratio: 1.622981e-02	ci left: 8.466204e-01	ci right 8.605729e-01	k: 8537	n:10000
KS ci ratio: 6.284356e-02	ci left: 2.712149e-01	ci right 2.889134e-01	k: 2800	n:10000
IGF2BP1   10000 perm   2 sec   (4948 perm/sec)   p_kst 2.800000e-01   p_cons 8.537000e-01   p_joint 5.234000e-01

Outputting figure to mutsig2_images.part000000000083/IGF2BP1.8_1794_10000_0.28_0.8537_0.5234.png
                gene_name: IGF2BP1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 12 percent done.
IGDCC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.063929e-02	ci left: 4.720631e-01	ci right 4.917475e-01	k: 4819	n:10000
Cons ci ratio: 8.432283e-02	ci left: 1.701542e-01	ci right 1.852341e-01	k: 1776	n:10000
KS ci ratio: 7.419256e-03	ci left: 9.617346e-01	ci right 9.689910e-01	k: 9655	n:10000
IGDCC3   10000 perm   2 sec   (4196 perm/sec)   p_kst 9.655000e-01   p_cons 1.776000e-01   p_joint 4.819000e-01

Outputting figure to mutsig2_images.part000000000083/IGDCC3.7_2501_10000_0.9655_0.1776_0.4819.png
                gene_name: IGDCC3
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 14 percent done.
IFIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.979647e-02	ci left: 7.887776e-01	ci right 8.046492e-01	k: 7968	n:10000
Cons ci ratio: 4.305088e-02	ci left: 4.434080e-01	ci right 4.630192e-01	k: 4532	n:10000
KS ci ratio: 2.503941e-02	ci left: 7.011979e-01	ci right 7.190795e-01	k: 7102	n:10000
IFIT1   10000 perm   2 sec   (5209 perm/sec)   p_kst 7.102000e-01   p_cons 4.532000e-01   p_joint 7.968000e-01

Outputting figure to mutsig2_images.part000000000083/IFIT1.6_1445_10000_0.7102_0.4532_0.7968.png
                gene_name: IFIT1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 16 percent done.
IFLTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.553173e-02	ci left: 4.158821e-01	ci right 4.353612e-01	k: 4256	n:10000
Cons ci ratio: 2.108542e-02	ci left: 7.672937e-01	ci right 7.837455e-01	k: 7756	n:10000
KS ci ratio: 7.148093e-02	ci left: 2.228673e-01	ci right 2.394896e-01	k: 2311	n:10000
IFLTD1   10000 perm   2 sec   (5158 perm/sec)   p_kst 2.311000e-01   p_cons 7.756000e-01   p_joint 4.256000e-01

Outputting figure to mutsig2_images.part000000000083/IFLTD1.6_1354_10000_0.2311_0.7756_0.4256.png
                gene_name: IFLTD1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 19 percent done.
IFT122
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.985006e-02	ci left: 2.911267e-01	ci right 3.091898e-01	k: 3001	n:10000
Cons ci ratio: 1.116695e-01	ci left: 1.035416e-01	ci right 1.158868e-01	k: 1096	n:10000
KS ci ratio: 4.152016e-02	ci left: 4.613760e-01	ci right 4.810407e-01	k: 4712	n:10000
IFT122   10000 perm   2 sec   (4390 perm/sec)   p_kst 4.712000e-01   p_cons 1.096000e-01   p_joint 3.001000e-01

Joint ci ratio: 3.953606e-02	ci left: 3.229860e-01	ci right 3.360636e-01	k: 6590	n:20000
Cons ci ratio: 7.834346e-02	ci left: 1.068747e-01	ci right 1.156386e-01	k: 2224	n:20000
KS ci ratio: 2.836710e-02	ci left: 4.814495e-01	ci right 4.953539e-01	k: 9768	n:20000
IFT122   20000 perm   5 sec   (3992 perm/sec)   p_kst 4.884000e-01   p_cons 1.112000e-01   p_joint 3.295000e-01

Outputting figure to mutsig2_images.part000000000083/IFT122.6_4006_20000_0.4884_0.1112_0.3295.png
                gene_name: IFT122
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 21 percent done.
IFT140
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.346729e-02	ci left: 1.731041e-01	ci right 1.882824e-01	k: 1806	n:10000
Cons ci ratio: 3.201653e-02	ci left: 5.901194e-01	ci right 6.094224e-01	k: 5998	n:10000
KS ci ratio: 1.194625e-01	ci left: 9.136461e-02	ci right 1.030712e-01	k: 971	n:10000
IFT140   10000 perm   3 sec   (3943 perm/sec)   p_kst 9.710000e-02   p_cons 5.998000e-01   p_joint 1.806000e-01

Joint ci ratio: 5.484581e-02	ci left: 1.978398e-01	ci right 2.090466e-01	k: 4068	n:20000
Cons ci ratio: 2.272531e-02	ci left: 5.911660e-01	ci right 6.048055e-01	k: 11960	n:20000
KS ci ratio: 8.435431e-02	ci left: 9.332451e-02	ci right 1.015929e-01	k: 1948	n:20000
IFT140   20000 perm   5 sec   (3731 perm/sec)   p_kst 9.740000e-02   p_cons 5.980000e-01   p_joint 2.034000e-01

Outputting figure to mutsig2_images.part000000000083/IFT140.6_4505_20000_0.0974_0.598_0.2034.png
                gene_name: IFT140
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 23 percent done.
IGF2BP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.576724e-02	ci left: 3.213802e-01	ci right 3.399186e-01	k: 3306	n:10000
Cons ci ratio: 4.255920e-02	ci left: 4.490965e-01	ci right 4.687274e-01	k: 4589	n:10000
KS ci ratio: 7.008223e-02	ci left: 2.298781e-01	ci right 2.466746e-01	k: 2382	n:10000
IGF2BP3   10000 perm   2 sec   (5284 perm/sec)   p_kst 2.382000e-01   p_cons 4.589000e-01   p_joint 3.306000e-01

Outputting figure to mutsig2_images.part000000000083/IGF2BP3.6_1800_10000_0.2382_0.4589_0.3306.png
                gene_name: IGF2BP3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 26 percent done.
IFIH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.643869e-01	ci left: 4.936226e-02	ci right 5.829990e-02	k: 537	n:10000
Cons ci ratio: 1.552890e-01	ci left: 5.523135e-02	ci right 6.462705e-02	k: 598	n:10000
KS ci ratio: 1.730584e-01	ci left: 4.456333e-02	ci right 5.310195e-02	k: 487	n:10000
IFIH1   10000 perm   2 sec   (4006 perm/sec)   p_kst 4.870000e-02   p_cons 5.980000e-02   p_joint 5.370000e-02

Joint ci ratio: 1.203141e-01	ci left: 4.736004e-02	ci right 5.347151e-02	k: 1007	n:20000
Cons ci ratio: 1.064011e-01	ci left: 6.015897e-02	ci right 6.696859e-02	k: 1270	n:20000
KS ci ratio: 1.213315e-01	ci left: 4.658307e-02	ci right 5.264873e-02	k: 991	n:20000
IFIH1   20000 perm   5 sec   (3697 perm/sec)   p_kst 4.955000e-02   p_cons 6.350000e-02   p_joint 5.035000e-02

Joint ci ratio: 8.902807e-02	ci left: 5.799134e-02	ci right 6.342745e-02	k: 1820	n:30000
Cons ci ratio: 8.931561e-02	ci left: 5.763236e-02	ci right 6.305317e-02	k: 1809	n:30000
KS ci ratio: 9.945493e-02	ci left: 4.677963e-02	ci right 5.170813e-02	k: 1476	n:30000
IFIH1   30000 perm   8 sec   (3576 perm/sec)   p_kst 4.920000e-02   p_cons 6.030000e-02   p_joint 6.066667e-02

Outputting figure to mutsig2_images.part000000000083/IFIH1.5_3142_30000_0.0492_0.0603_0.060667.png
                gene_name: IFIH1
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.063 

Current progress: 28 percent done.
IFIT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.958849e-02	ci left: 7.922262e-01	ci right 8.079986e-01	k: 8002	n:10000
Cons ci ratio: 3.033536e-02	ci left: 6.158280e-01	ci right 6.348989e-01	k: 6254	n:10000
KS ci ratio: 2.960179e-02	ci left: 6.272853e-01	ci right 6.462349e-01	k: 6368	n:10000
IFIT2   10000 perm   2 sec   (5362 perm/sec)   p_kst 6.368000e-01   p_cons 6.254000e-01   p_joint 8.002000e-01

Outputting figure to mutsig2_images.part000000000083/IFIT2.5_1427_10000_0.6368_0.6254_0.8002.png
                gene_name: IFIT2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 30 percent done.
IFRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.307401e-02	ci left: 5.743665e-01	ci right 5.937845e-01	k: 5841	n:10000
Cons ci ratio: 8.254871e-02	ci left: 1.763499e-01	ci right 1.916346e-01	k: 1839	n:10000
KS ci ratio: 1.528263e-02	ci left: 8.613106e-01	ci right 8.746743e-01	k: 8681	n:10000
IFRD1   10000 perm   2 sec   (4727 perm/sec)   p_kst 8.681000e-01   p_cons 1.839000e-01   p_joint 5.841000e-01

Outputting figure to mutsig2_images.part000000000083/IFRD1.5_1404_10000_0.8681_0.1839_0.5841.png
                gene_name: IFRD1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 33 percent done.
IFT88
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.325932e-02	ci left: 7.308797e-01	ci right 7.481806e-01	k: 7396	n:10000
Cons ci ratio: 3.209660e-02	ci left: 5.889150e-01	ci right 6.082275e-01	k: 5986	n:10000
KS ci ratio: 2.974270e-02	ci left: 6.250738e-01	ci right 6.440477e-01	k: 6346	n:10000
IFT88   10000 perm   2 sec   (4733 perm/sec)   p_kst 6.346000e-01   p_cons 5.986000e-01   p_joint 7.396000e-01

Outputting figure to mutsig2_images.part000000000083/IFT88.5_2606_10000_0.6346_0.5986_0.7396.png
                gene_name: IFT88
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 35 percent done.
IGDCC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.924285e-02	ci left: 3.782339e-01	ci right 3.974315e-01	k: 3878	n:10000
Cons ci ratio: 8.915327e-02	ci left: 1.547295e-01	ci right 1.692679e-01	k: 1619	n:10000
KS ci ratio: 5.189480e-02	ci left: 3.537651e-01	ci right 3.727147e-01	k: 3632	n:10000
IGDCC4   10000 perm   2 sec   (4578 perm/sec)   p_kst 3.632000e-01   p_cons 1.619000e-01   p_joint 3.878000e-01

Outputting figure to mutsig2_images.part000000000083/IGDCC4.5_3833_10000_0.3632_0.1619_0.3878.png
                gene_name: IGDCC4
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 37 percent done.
IDO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.297765e-02	ci left: 3.443228e-01	ci right 3.631625e-01	k: 3537	n:10000
Cons ci ratio: 6.677346e-02	ci left: 2.476661e-01	ci right 2.648761e-01	k: 2562	n:10000
KS ci ratio: 5.955229e-02	ci left: 2.932083e-01	ci right 3.113070e-01	k: 3022	n:10000
IDO1   10000 perm   2 sec   (6022 perm/sec)   p_kst 3.022000e-01   p_cons 2.562000e-01   p_joint 3.537000e-01

Outputting figure to mutsig2_images.part000000000083/IDO1.4_1252_10000_0.3022_0.2562_0.3537.png
                gene_name: IDO1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 40 percent done.
IFIT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.357268e-02	ci left: 8.867766e-01	ci right 8.989934e-01	k: 8930	n:10000
Cons ci ratio: 3.054934e-02	ci left: 6.125124e-01	ci right 6.316164e-01	k: 6221	n:10000
KS ci ratio: 2.225164e-02	ci left: 7.477617e-01	ci right 7.646888e-01	k: 7563	n:10000
IFIT3   10000 perm   2 sec   (5464 perm/sec)   p_kst 7.563000e-01   p_cons 6.221000e-01   p_joint 8.930000e-01

Outputting figure to mutsig2_images.part000000000083/IFIT3.4_1490_10000_0.7563_0.6221_0.893.png
                gene_name: IFIT3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 42 percent done.
IFNA16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.852581e-02	ci left: 4.987503e-01	ci right 5.184447e-01	k: 5086	n:10000
Cons ci ratio: 5.508155e-02	ci left: 3.268405e-01	ci right 3.454551e-01	k: 3361	n:10000
KS ci ratio: 5.537902e-02	ci left: 3.244576e-01	ci right 3.430393e-01	k: 3337	n:10000
IFNA16   10000 perm   2 sec   (6651 perm/sec)   p_kst 3.337000e-01   p_cons 3.361000e-01   p_joint 5.086000e-01

Outputting figure to mutsig2_images.part000000000083/IFNA16.4_574_10000_0.3337_0.3361_0.5086.png
                gene_name: IFNA16
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 44 percent done.
IFNA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.269452e-02	ci left: 1.446231e-01	ci right 1.587804e-01	k: 1516	n:10000
Cons ci ratio: 4.545732e-02	ci left: 4.166796e-01	ci right 4.361633e-01	k: 4264	n:10000
KS ci ratio: 1.382589e-01	ci left: 6.923436e-02	ci right 7.961519e-02	k: 743	n:10000
IFNA2   10000 perm   2 sec   (5727 perm/sec)   p_kst 7.430000e-02   p_cons 4.264000e-01   p_joint 1.516000e-01

Joint ci ratio: 6.020370e-02	ci left: 1.696083e-01	ci right 1.801863e-01	k: 3497	n:20000
Cons ci ratio: 3.185862e-02	ci left: 4.239226e-01	ci right 4.376975e-01	k: 8616	n:20000
KS ci ratio: 9.709772e-02	ci left: 7.167988e-02	ci right 7.904415e-02	k: 1506	n:20000
IFNA2   20000 perm   4 sec   (5093 perm/sec)   p_kst 7.530000e-02   p_cons 4.308000e-01   p_joint 1.748500e-01

Outputting figure to mutsig2_images.part000000000083/IFNA2.4_571_20000_0.0753_0.4308_0.17485.png
                gene_name: IFNA2
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 47 percent done.
IGFBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.209850e-01	ci left: 8.922438e-02	ci right 1.008128e-01	k: 949	n:10000
Cons ci ratio: 3.980231e-02	ci left: 4.824548e-01	ci right 5.021497e-01	k: 4923	n:10000
KS ci ratio: 1.388648e-01	ci left: 6.865367e-02	ci right 7.899624e-02	k: 737	n:10000
IGFBP3   10000 perm   2 sec   (6549 perm/sec)   p_kst 7.370000e-02   p_cons 4.923000e-01   p_joint 9.490000e-02

Joint ci ratio: 5.512657e-02	ci left: 1.962069e-01	ci right 2.073799e-01	k: 4035	n:20000
Cons ci ratio: 2.750668e-02	ci left: 4.968456e-01	ci right 5.107533e-01	k: 10076	n:20000
KS ci ratio: 9.917709e-02	ci left: 6.884579e-02	ci right 7.607910e-02	k: 1448	n:20000
IGFBP3   20000 perm   4 sec   (5317 perm/sec)   p_kst 7.240000e-02   p_cons 5.038000e-01   p_joint 2.017500e-01

Outputting figure to mutsig2_images.part000000000083/IGFBP3.4_910_20000_0.0724_0.5038_0.20175.png
                gene_name: IGFBP3
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 49 percent done.
IFI35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.212673e-01	ci left: 8.883535e-02	ci right 1.004021e-01	k: 945	n:10000
Cons ci ratio: 3.868797e-02	ci left: 4.966503e-01	ci right 5.163459e-01	k: 5065	n:10000
KS ci ratio: 2.510420e-01	ci left: 2.080800e-02	ci right 2.687375e-02	k: 237	n:10000
IFI35   10000 perm   2 sec   (5297 perm/sec)   p_kst 2.370000e-02   p_cons 5.065000e-01   p_joint 9.450000e-02

Joint ci ratio: 1.047389e-01	ci left: 6.201199e-02	ci right 6.891500e-02	k: 1308	n:20000
Cons ci ratio: 2.751768e-02	ci left: 4.966456e-01	ci right 5.105534e-01	k: 10072	n:20000
KS ci ratio: 1.645238e-01	ci left: 2.532545e-02	ci right 2.991327e-02	k: 551	n:20000
IFI35   20000 perm   4 sec   (5080 perm/sec)   p_kst 2.755000e-02   p_cons 5.036000e-01   p_joint 6.540000e-02

Joint ci ratio: 9.519244e-02	ci left: 5.094770e-02	ci right 5.607254e-02	k: 1604	n:30000
Cons ci ratio: 2.247015e-02	ci left: 4.978921e-01	ci right 5.092405e-01	k: 15107	n:30000
KS ci ratio: 1.315030e-01	ci left: 2.687203e-02	ci right 3.068662e-02	k: 862	n:30000
IFI35   30000 perm   6 sec   (4932 perm/sec)   p_kst 2.873333e-02   p_cons 5.035667e-01   p_joint 5.346667e-02

Joint ci ratio: 6.127239e-02	ci left: 8.997369e-02	ci right 9.568558e-02	k: 3712	n:40000
Cons ci ratio: 1.943047e-02	ci left: 4.994126e-01	ci right 5.092368e-01	k: 20173	n:40000
KS ci ratio: 1.128627e-01	ci left: 2.762041e-02	ci right 3.094839e-02	k: 1170	n:40000
IFI35   40000 perm   8 sec   (4763 perm/sec)   p_kst 2.925000e-02   p_cons 5.043250e-01   p_joint 9.280000e-02

Joint ci ratio: 4.916477e-02	ci left: 1.100199e-01	ci right 1.155852e-01	k: 5639	n:50000
Cons ci ratio: 1.733362e-02	ci left: 5.012474e-01	ci right 5.100319e-01	k: 25282	n:50000
KS ci ratio: 1.017290e-01	ci left: 2.737098e-02	ci right 3.032406e-02	k: 1441	n:50000
IFI35   50000 perm   11 sec   (4672 perm/sec)   p_kst 2.882000e-02   p_cons 5.056400e-01   p_joint 1.127800e-01

Joint ci ratio: 4.245063e-02	ci left: 1.217856e-01	ci right 1.270841e-01	k: 7465	n:60000
Cons ci ratio: 1.586114e-02	ci left: 5.004409e-01	ci right 5.084586e-01	k: 30267	n:60000
KS ci ratio: 9.287664e-02	ci left: 2.749258e-02	ci right 3.018659e-02	k: 1729	n:60000
IFI35   60000 perm   13 sec   (4526 perm/sec)   p_kst 2.881667e-02   p_cons 5.044500e-01   p_joint 1.244167e-01

Outputting figure to mutsig2_images.part000000000083/IFI35.3_895_60000_0.028817_0.50445_0.12442.png
                gene_name: IFI35
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 51 percent done.
IFI44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.509927e-02	ci left: 2.573588e-01	ci right 2.747777e-01	k: 2660	n:10000
Cons ci ratio: 1.767052e-01	ci left: 4.274287e-02	ci right 5.112360e-02	k: 468	n:10000
KS ci ratio: 2.444450e-02	ci left: 7.110866e-01	ci right 7.287851e-01	k: 7200	n:10000
IFI44   10000 perm   2 sec   (5927 perm/sec)   p_kst 7.200000e-01   p_cons 4.680000e-02   p_joint 2.660000e-01

Joint ci ratio: 5.752079e-02	ci left: 1.830013e-01	ci right 1.938895e-01	k: 3768	n:20000
Cons ci ratio: 1.235085e-01	ci left: 4.498124e-02	ci right 5.095106e-02	k: 958	n:20000
KS ci ratio: 1.732595e-02	ci left: 7.127643e-01	ci right 7.252719e-01	k: 14381	n:20000
IFI44   20000 perm   4 sec   (5145 perm/sec)   p_kst 7.190500e-01   p_cons 4.790000e-02   p_joint 1.884000e-01

Joint ci ratio: 4.610104e-02	ci left: 1.897037e-01	ci right 1.986889e-01	k: 5825	n:30000
Cons ci ratio: 1.006431e-01	ci left: 4.570585e-02	ci right 5.058213e-02	k: 1443	n:30000
KS ci ratio: 1.417294e-02	ci left: 7.131722e-01	ci right 7.233855e-01	k: 21549	n:30000
IFI44   30000 perm   6 sec   (4909 perm/sec)   p_kst 7.183000e-01   p_cons 4.810000e-02   p_joint 1.941667e-01

Joint ci ratio: 4.233261e-02	ci left: 1.727749e-01	ci right 1.802721e-01	k: 7060	n:40000
Cons ci ratio: 8.762298e-02	ci left: 4.555832e-02	ci right 4.975766e-02	k: 1905	n:40000
KS ci ratio: 1.223323e-02	ci left: 7.152199e-01	ci right 7.240482e-01	k: 28786	n:40000
IFI44   40000 perm   8 sec   (4745 perm/sec)   p_kst 7.196500e-01   p_cons 4.762500e-02   p_joint 1.765000e-01

Outputting figure to mutsig2_images.part000000000083/IFI44.3_1367_40000_0.71965_0.047625_0.1765.png
                gene_name: IFI44
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 53 percent done.
IFIT1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.585772e-02	ci left: 2.529073e-01	ci right 2.702318e-01	k: 2615	n:10000
Cons ci ratio: 8.033598e-02	ci left: 1.845176e-01	ci right 2.000620e-01	k: 1922	n:10000
KS ci ratio: 6.973651e-02	ci left: 2.316560e-01	ci right 2.484957e-01	k: 2400	n:10000
IFIT1B   10000 perm   2 sec   (5794 perm/sec)   p_kst 2.400000e-01   p_cons 1.922000e-01   p_joint 2.615000e-01

Outputting figure to mutsig2_images.part000000000083/IFIT1B.3_1433_10000_0.24_0.1922_0.2615.png
                gene_name: IFIT1B
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 56 percent done.
IFIT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.544741e-02	ci left: 6.944402e-01	ci right 7.124411e-01	k: 7035	n:10000
Cons ci ratio: 5.071561e-02	ci left: 3.644048e-01	ci right 3.834687e-01	k: 3739	n:10000
KS ci ratio: 3.331279e-02	ci left: 5.708560e-01	ci right 5.902970e-01	k: 5806	n:10000
IFIT5   10000 perm   2 sec   (5758 perm/sec)   p_kst 5.806000e-01   p_cons 3.739000e-01   p_joint 7.035000e-01

Outputting figure to mutsig2_images.part000000000083/IFIT5.3_1457_10000_0.5806_0.3739_0.7035.png
                gene_name: IFIT5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 58 percent done.
IFNA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.691072e-02	ci left: 1.982083e-01	ci right 2.141632e-01	k: 2061	n:10000
Cons ci ratio: 1.928796e-02	ci left: 7.971977e-01	ci right 8.128242e-01	k: 8051	n:10000
KS ci ratio: 1.487901e-01	ci left: 6.005239e-02	ci right 6.980294e-02	k: 648	n:10000
IFNA10   10000 perm   1 sec   (6854 perm/sec)   p_kst 6.480000e-02   p_cons 8.051000e-01   p_joint 2.061000e-01

Joint ci ratio: 5.923126e-02	ci left: 1.743020e-01	ci right 1.849913e-01	k: 3592	n:20000
Cons ci ratio: 1.345341e-02	ci left: 8.038362e-01	ci right 8.147738e-01	k: 16187	n:20000
KS ci ratio: 1.043980e-01	ci left: 6.240220e-02	ci right 6.932467e-02	k: 1316	n:20000
IFNA10   20000 perm   3 sec   (5890 perm/sec)   p_kst 6.580000e-02   p_cons 8.093500e-01   p_joint 1.796000e-01

Joint ci ratio: 4.973173e-02	ci left: 1.672828e-01	ci right 1.758475e-01	k: 5146	n:30000
Cons ci ratio: 1.103140e-02	ci left: 8.035302e-01	ci right 8.124767e-01	k: 24241	n:30000
KS ci ratio: 8.557791e-02	ci left: 6.256256e-02	ci right 6.818863e-02	k: 1960	n:30000
IFNA10   30000 perm   5 sec   (5564 perm/sec)   p_kst 6.533333e-02   p_cons 8.080333e-01   p_joint 1.715333e-01

Outputting figure to mutsig2_images.part000000000083/IFNA10.3_574_30000_0.065333_0.80803_0.17153.png
                gene_name: IFNA10
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 60 percent done.
IFNA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.842084e-03	ci left: 9.576469e-01	ci right 9.652813e-01	k: 9616	n:10000
Cons ci ratio: 1.113507e-02	ci left: 9.200754e-01	ci right 9.304753e-01	k: 9254	n:10000
KS ci ratio: 3.827232e-02	ci left: 5.020507e-01	ci right 5.217424e-01	k: 5119	n:10000
IFNA6   10000 perm   1 sec   (6857 perm/sec)   p_kst 5.119000e-01   p_cons 9.254000e-01   p_joint 9.616000e-01

Outputting figure to mutsig2_images.part000000000083/IFNA6.3_572_10000_0.5119_0.9254_0.9616.png
                gene_name: IFNA6
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 63 percent done.
IFNAR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.973534e-02	ci left: 7.897918e-01	ci right 8.056344e-01	k: 7978	n:10000
KS ci ratio: 5.013191e-03	ci left: 9.813449e-01	ci right 9.863675e-01	k: 9840	n:10000
IFNAR1   10000 perm   2 sec   (5668 perm/sec)   p_kst 9.840000e-01   p_cons 7.978000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000083/IFNAR1.3_1718_10000_0.984_0.7978_1.png
                gene_name: IFNAR1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
IFNGR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.777941e-02	ci left: 3.059998e-01	ci right 3.243080e-01	k: 3151	n:10000
Cons ci ratio: 8.591465e-02	ci left: 1.648463e-01	ci right 1.797451e-01	k: 1722	n:10000
KS ci ratio: 4.983906e-02	ci left: 3.725620e-01	ci right 3.917067e-01	k: 3821	n:10000
IFNGR1   10000 perm   2 sec   (5374 perm/sec)   p_kst 3.821000e-01   p_cons 1.722000e-01   p_joint 3.151000e-01

Outputting figure to mutsig2_images.part000000000083/IFNGR1.3_1498_10000_0.3821_0.1722_0.3151.png
                gene_name: IFNGR1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 67 percent done.
IFT81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.034830e-02	ci left: 6.156270e-01	ci right 6.347000e-01	k: 6252	n:10000
Cons ci ratio: 1.653384e-02	ci left: 8.418309e-01	ci right 8.559652e-01	k: 8490	n:10000
KS ci ratio: 5.021042e-02	ci left: 3.690799e-01	ci right 3.881908e-01	k: 3786	n:10000
IFT81   10000 perm   2 sec   (5546 perm/sec)   p_kst 3.786000e-01   p_cons 8.490000e-01   p_joint 6.252000e-01

Outputting figure to mutsig2_images.part000000000083/IFT81.3_2215_10000_0.3786_0.849_0.6252.png
                gene_name: IFT81
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 70 percent done.
IGBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.538916e-02	ci left: 8.596771e-01	ci right 8.731087e-01	k: 8665	n:10000
KS ci ratio: 2.629793e-02	ci left: 6.804278e-01	ci right 6.986616e-01	k: 6896	n:10000
IGBP1   10000 perm   2 sec   (6206 perm/sec)   p_kst 6.896000e-01   p_cons 8.665000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000083/IGBP1.3_1044_10000_0.6896_0.8665_1.png
                gene_name: IGBP1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
IDH3G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.357936e-02	ci left: 7.255253e-01	ci right 7.429380e-01	k: 7343	n:10000
Cons ci ratio: 2.945635e-01	ci left: 1.483579e-02	ci right 2.005075e-02	k: 173	n:10000
KS ci ratio: 6.100950e-02	ci left: 2.831991e-01	ci right 3.011221e-01	k: 2921	n:10000
IDH3G   10000 perm   1 sec   (6871 perm/sec)   p_kst 2.921000e-01   p_cons 1.730000e-02   p_joint 7.343000e-01

Joint ci ratio: 1.920746e-01	ci left: 1.843815e-02	ci right 2.240301e-02	k: 407	n:20000
Cons ci ratio: 2.079889e-01	ci left: 1.563326e-02	ci right 1.930895e-02	k: 348	n:20000
KS ci ratio: 4.284505e-02	ci left: 2.886849e-01	ci right 3.013748e-01	k: 5900	n:20000
IDH3G   20000 perm   3 sec   (5940 perm/sec)   p_kst 2.950000e-01   p_cons 1.740000e-02   p_joint 2.035000e-02

Joint ci ratio: 1.593736e-01	ci left: 1.818947e-02	ci right 2.137116e-02	k: 592	n:30000
Cons ci ratio: 1.714134e-01	ci left: 1.566320e-02	ci right 1.863136e-02	k: 513	n:30000
KS ci ratio: 3.466734e-02	ci left: 2.936234e-01	ci right 3.040156e-01	k: 8964	n:30000
IDH3G   30000 perm   5 sec   (5590 perm/sec)   p_kst 2.988000e-01   p_cons 1.710000e-02   p_joint 1.973333e-02

Joint ci ratio: 1.394381e-01	ci left: 1.802253e-02	ci right 2.074787e-02	k: 774	n:40000
Cons ci ratio: 1.496006e-01	ci left: 1.561134e-02	ci right 1.815949e-02	k: 674	n:40000
KS ci ratio: 3.006107e-02	ci left: 2.937938e-01	ci right 3.027855e-01	k: 11931	n:40000
IDH3G   40000 perm   7 sec   (5361 perm/sec)   p_kst 2.982750e-01   p_cons 1.685000e-02   p_joint 1.935000e-02

Joint ci ratio: 1.233450e-01	ci left: 1.857744e-02	ci right 2.103876e-02	k: 989	n:50000
Cons ci ratio: 1.325151e-01	ci left: 1.605913e-02	ci right 1.835742e-02	k: 859	n:50000
KS ci ratio: 2.692088e-02	ci left: 2.937537e-01	ci right 3.017898e-01	k: 14888	n:50000
IDH3G   50000 perm   10 sec   (5127 perm/sec)   p_kst 2.977600e-01   p_cons 1.718000e-02   p_joint 1.978000e-02

Joint ci ratio: 1.172661e-01	ci left: 1.721017e-02	ci right 1.937012e-02	k: 1096	n:60000
Cons ci ratio: 1.215700e-01	ci left: 1.599688e-02	ci right 1.808354e-02	k: 1021	n:60000
KS ci ratio: 2.464284e-02	ci left: 2.929634e-01	ci right 3.002896e-01	k: 17797	n:60000
IDH3G   60000 perm   12 sec   (4910 perm/sec)   p_kst 2.966167e-01   p_cons 1.701667e-02   p_joint 1.826667e-02

Joint ci ratio: 1.078754e-01	ci left: 1.751462e-02	ci right 1.952557e-02	k: 1295	n:70000
Cons ci ratio: 1.114323e-01	ci left: 1.640258e-02	ci right 1.835201e-02	k: 1215	n:70000
KS ci ratio: 2.287539e-02	ci left: 2.921356e-01	ci right 2.989099e-01	k: 20686	n:70000
IDH3G   70000 perm   15 sec   (4728 perm/sec)   p_kst 2.955143e-01   p_cons 1.735714e-02   p_joint 1.850000e-02

Joint ci ratio: 1.003282e-01	ci left: 1.778473e-02	ci right 1.967540e-02	k: 1497	n:80000
Cons ci ratio: 1.036944e-01	ci left: 1.663919e-02	ci right 1.847104e-02	k: 1403	n:80000
KS ci ratio: 2.136800e-02	ci left: 2.929376e-01	ci right 2.992772e-01	k: 23688	n:80000
IDH3G   80000 perm   17 sec   (4647 perm/sec)   p_kst 2.961000e-01   p_cons 1.753750e-02   p_joint 1.871250e-02

Joint ci ratio: 9.465479e-02	ci left: 1.781412e-02	ci right 1.959487e-02	k: 1682	n:90000
Cons ci ratio: 9.784289e-02	ci left: 1.666420e-02	ci right 1.838932e-02	k: 1576	n:90000
KS ci ratio: 2.017451e-02	ci left: 2.925313e-01	ci right 2.985041e-01	k: 26596	n:90000
IDH3G   90000 perm   20 sec   (4568 perm/sec)   p_kst 2.955111e-01   p_cons 1.751111e-02   p_joint 1.868889e-02

Outputting figure to mutsig2_images.part000000000083/IDH3G.2_1297_90000_0.29551_0.017511_0.018689.png
                gene_name: IDH3G
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 74 percent done.
IDS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.896315e-01	ci left: 3.113627e-03	ci right 5.787748e-03	k: 43	n:10000
Cons ci ratio: 2.067437e-01	ci left: 3.110398e-02	ci right 3.837033e-02	k: 346	n:10000
KS ci ratio: 2.458026e-01	ci left: 2.174701e-02	ci right 2.793403e-02	k: 247	n:10000
IDS   10000 perm   2 sec   (6292 perm/sec)   p_kst 2.470000e-02   p_cons 3.460000e-02   p_joint 4.300000e-03

Joint ci ratio: 4.817099e-01	ci left: 2.509150e-03	ci right 4.140543e-03	k: 65	n:20000
Cons ci ratio: 1.470737e-01	ci left: 3.177235e-02	ci right 3.686421e-02	k: 685	n:20000
KS ci ratio: 1.734545e-01	ci left: 2.273688e-02	ci right 2.710273e-02	k: 497	n:20000
IDS   20000 perm   4 sec   (5461 perm/sec)   p_kst 2.485000e-02   p_cons 3.425000e-02   p_joint 3.250000e-03

Joint ci ratio: 3.782780e-01	ci left: 2.893683e-03	ci right 4.271882e-03	k: 106	n:30000
Cons ci ratio: 1.203893e-01	ci left: 3.207488e-02	ci right 3.621597e-02	k: 1023	n:30000
KS ci ratio: 1.413354e-01	ci left: 2.323058e-02	ci right 2.679555e-02	k: 749	n:30000
IDS   30000 perm   6 sec   (5091 perm/sec)   p_kst 2.496667e-02   p_cons 3.410000e-02   p_joint 3.533333e-03

Joint ci ratio: 3.017950e-01	ci left: 3.566836e-03	ci right 4.856777e-03	k: 167	n:40000
Cons ci ratio: 1.030299e-01	ci left: 3.312280e-02	ci right 3.674512e-02	k: 1396	n:40000
KS ci ratio: 1.226523e-01	ci left: 2.337080e-02	ci right 2.644870e-02	k: 995	n:40000
IDS   40000 perm   8 sec   (4919 perm/sec)   p_kst 2.487500e-02   p_cons 3.490000e-02   p_joint 4.175000e-03

Joint ci ratio: 2.718916e-01	ci left: 3.577498e-03	ci right 4.721253e-03	k: 206	n:50000
Cons ci ratio: 9.251729e-02	ci left: 3.305420e-02	ci right 3.628012e-02	k: 1732	n:50000
KS ci ratio: 1.096587e-01	ci left: 2.355184e-02	ci right 2.630370e-02	k: 1245	n:50000
IDS   50000 perm   10 sec   (4777 perm/sec)   p_kst 2.490000e-02   p_cons 3.464000e-02   p_joint 4.120000e-03

Joint ci ratio: 2.514764e-01	ci left: 3.526356e-03	ci right 4.555863e-03	k: 241	n:60000
Cons ci ratio: 8.536640e-02	ci left: 3.249884e-02	ci right 3.541313e-02	k: 2036	n:60000
KS ci ratio: 1.004563e-01	ci left: 2.350530e-02	ci right 2.600762e-02	k: 1484	n:60000
IDS   60000 perm   13 sec   (4615 perm/sec)   p_kst 2.473333e-02   p_cons 3.393333e-02   p_joint 4.016667e-03

Joint ci ratio: 2.681831e-01	ci left: 2.635088e-03	ci right 3.464098e-03	k: 212	n:70000
Cons ci ratio: 7.888810e-02	ci left: 3.272571e-02	ci right 3.542737e-02	k: 2384	n:70000
KS ci ratio: 9.247238e-02	ci left: 2.386997e-02	ci right 2.619820e-02	k: 1751	n:70000
IDS   70000 perm   15 sec   (4519 perm/sec)   p_kst 2.501429e-02   p_cons 3.405714e-02   p_joint 3.028571e-03

Joint ci ratio: 1.967479e-01	ci left: 4.451673e-03	ci right 5.434757e-03	k: 394	n:80000
Cons ci ratio: 7.359370e-02	ci left: 3.298811e-02	ci right 3.552081e-02	k: 2739	n:80000
KS ci ratio: 8.615393e-02	ci left: 2.413715e-02	ci right 2.632246e-02	k: 2017	n:80000
IDS   80000 perm   18 sec   (4343 perm/sec)   p_kst 2.521250e-02   p_cons 3.423750e-02   p_joint 4.925000e-03

Joint ci ratio: 2.025478e-01	ci left: 3.724670e-03	ci right 4.574446e-03	k: 372	n:90000
Cons ci ratio: 6.929760e-02	ci left: 3.314229e-02	ci right 3.553229e-02	k: 3089	n:90000
KS ci ratio: 8.160088e-02	ci left: 2.397889e-02	ci right 2.602966e-02	k: 2249	n:90000
IDS   90000 perm   21 sec   (4219 perm/sec)   p_kst 2.498889e-02   p_cons 3.432222e-02   p_joint 4.133333e-03

Joint ci ratio: 1.477482e-01	ci left: 6.473335e-03	ci right 7.515569e-03	k: 698	n:100000
Cons ci ratio: 6.549825e-02	ci left: 3.344622e-02	ci right 3.572087e-02	k: 3457	n:100000
KS ci ratio: 7.712912e-02	ci left: 2.420794e-02	ci right 2.615974e-02	k: 2517	n:100000
IDS   100000 perm   24 sec   (4103 perm/sec)   p_kst 2.517000e-02   p_cons 3.457000e-02   p_joint 6.980000e-03

Joint ci ratio: 1.404957e-01	ci left: 6.533343e-03	ci right 7.529279e-03	k: 772	n:110000
Cons ci ratio: 6.227064e-02	ci left: 3.368886e-02	ci right 3.586303e-02	k: 3824	n:110000
KS ci ratio: 7.356428e-02	ci left: 2.423714e-02	ci right 2.609710e-02	k: 2767	n:110000
IDS   110000 perm   28 sec   (3962 perm/sec)   p_kst 2.515455e-02   p_cons 3.476364e-02   p_joint 7.018182e-03

Joint ci ratio: 1.344561e-01	ci left: 6.560225e-03	ci right 7.513832e-03	k: 843	n:120000
Cons ci ratio: 5.969916e-02	ci left: 3.364694e-02	ci right 3.572562e-02	k: 4161	n:120000
KS ci ratio: 7.015455e-02	ci left: 2.446797e-02	ci right 2.625507e-02	k: 3042	n:120000
IDS   120000 perm   31 sec   (3885 perm/sec)   p_kst 2.535000e-02   p_cons 3.467500e-02   p_joint 7.025000e-03

Joint ci ratio: 1.686525e-01	ci left: 3.789370e-03	ci right 4.494569e-03	k: 537	n:130000
Cons ci ratio: 5.740219e-02	ci left: 3.363580e-02	ci right 3.563118e-02	k: 4501	n:130000
KS ci ratio: 6.710617e-02	ci left: 2.471793e-02	ci right 2.644178e-02	k: 3324	n:130000
IDS   130000 perm   34 sec   (3829 perm/sec)   p_kst 2.556923e-02   p_cons 3.462308e-02   p_joint 4.130769e-03

Joint ci ratio: 1.618715e-01	ci left: 3.833694e-03	ci right 4.515665e-03	k: 583	n:140000
Cons ci ratio: 5.536331e-02	ci left: 3.361348e-02	ci right 3.553443e-02	k: 4839	n:140000
KS ci ratio: 6.467227e-02	ci left: 2.474379e-02	ci right 2.640451e-02	k: 3579	n:140000
IDS   140000 perm   37 sec   (3754 perm/sec)   p_kst 2.556429e-02   p_cons 3.456429e-02   p_joint 4.164286e-03

Joint ci ratio: 1.576161e-01	ci left: 3.782912e-03	ci right 4.436485e-03	k: 615	n:150000
Cons ci ratio: 5.325097e-02	ci left: 3.393742e-02	ci right 3.580061e-02	k: 5229	n:150000
KS ci ratio: 6.260270e-02	ci left: 2.467528e-02	ci right 2.627647e-02	k: 3820	n:150000
IDS   150000 perm   41 sec   (3690 perm/sec)   p_kst 2.546667e-02   p_cons 3.486000e-02   p_joint 4.100000e-03

Joint ci ratio: 1.522703e-01	ci left: 3.810823e-03	ci right 4.444853e-03	k: 659	n:160000
Cons ci ratio: 5.159199e-02	ci left: 3.392581e-02	ci right 3.572860e-02	k: 5571	n:160000
KS ci ratio: 6.060515e-02	ci left: 2.470844e-02	ci right 2.625882e-02	k: 4076	n:160000
IDS   160000 perm   44 sec   (3635 perm/sec)   p_kst 2.547500e-02   p_cons 3.481875e-02   p_joint 4.118750e-03

Joint ci ratio: 1.586920e-01	ci left: 3.292600e-03	ci right 3.865711e-03	k: 607	n:170000
Cons ci ratio: 5.007460e-02	ci left: 3.392217e-02	ci right 3.567021e-02	k: 5914	n:170000
KS ci ratio: 5.880827e-02	ci left: 2.472102e-02	ci right 2.622463e-02	k: 4329	n:170000
IDS   170000 perm   47 sec   (3580 perm/sec)   p_kst 2.546471e-02   p_cons 3.478824e-02   p_joint 3.570588e-03

Joint ci ratio: 1.544335e-01	ci left: 3.291167e-03	ci right 3.847233e-03	k: 641	n:180000
Cons ci ratio: 4.874018e-02	ci left: 3.384276e-02	ci right 3.553893e-02	k: 6243	n:180000
KS ci ratio: 5.713670e-02	ci left: 2.475472e-02	ci right 2.621617e-02	k: 4586	n:180000
IDS   180000 perm   51 sec   (3525 perm/sec)   p_kst 2.547778e-02   p_cons 3.468333e-02   p_joint 3.561111e-03

Joint ci ratio: 1.640883e-01	ci left: 2.748971e-03	ci right 3.245333e-03	k: 568	n:190000
Cons ci ratio: 4.754077e-02	ci left: 3.372545e-02	ci right 3.537300e-02	k: 6563	n:190000
KS ci ratio: 5.558237e-02	ci left: 2.480099e-02	ci right 2.622406e-02	k: 4846	n:190000
IDS   190000 perm   55 sec   (3472 perm/sec)   p_kst 2.550526e-02   p_cons 3.454211e-02   p_joint 2.989474e-03

Joint ci ratio: 1.183545e-01	ci left: 5.132025e-03	ci right 5.782435e-03	k: 1090	n:200000
Cons ci ratio: 4.638736e-02	ci left: 3.367472e-02	ci right 3.527881e-02	k: 6894	n:200000
KS ci ratio: 5.416468e-02	ci left: 2.482832e-02	ci right 2.621548e-02	k: 5103	n:200000
IDS   200000 perm   58 sec   (3420 perm/sec)   p_kst 2.551500e-02   p_cons 3.447000e-02   p_joint 5.450000e-03

Joint ci ratio: 1.428820e-01	ci left: 3.316186e-03	ci right 3.831000e-03	k: 749	n:210000
Cons ci ratio: 4.526863e-02	ci left: 3.369520e-02	ci right 3.526054e-02	k: 7239	n:210000
KS ci ratio: 5.271415e-02	ci left: 2.498038e-02	ci right 2.633752e-02	k: 5387	n:210000
IDS   210000 perm   63 sec   (3355 perm/sec)   p_kst 2.565238e-02   p_cons 3.447143e-02   p_joint 3.566667e-03

Joint ci ratio: 1.389519e-01	ci left: 3.354019e-03	ci right 3.859199e-03	k: 792	n:220000
Cons ci ratio: 4.431797e-02	ci left: 3.357933e-02	ci right 3.510570e-02	k: 7554	n:220000
KS ci ratio: 5.148145e-02	ci left: 2.501583e-02	ci right 2.634217e-02	k: 5648	n:220000
IDS   220000 perm   67 sec   (3298 perm/sec)   p_kst 2.567273e-02   p_cons 3.433636e-02   p_joint 3.600000e-03

Joint ci ratio: 1.253384e-01	ci left: 3.969274e-03	ci right 4.504208e-03	k: 973	n:230000
Cons ci ratio: 4.333079e-02	ci left: 3.361584e-02	ci right 3.510897e-02	k: 7902	n:230000
KS ci ratio: 5.022245e-02	ci left: 2.515589e-02	ci right 2.645610e-02	k: 5934	n:230000
IDS   230000 perm   71 sec   (3242 perm/sec)   p_kst 2.580000e-02   p_cons 3.435652e-02   p_joint 4.230435e-03

Joint ci ratio: 1.319004e-01	ci left: 3.424751e-03	ci right 3.912357e-03	k: 879	n:240000
Cons ci ratio: 4.242542e-02	ci left: 3.362078e-02	ci right 3.508216e-02	k: 8243	n:240000
KS ci ratio: 4.921825e-02	ci left: 2.511586e-02	ci right 2.638730e-02	k: 6179	n:240000
IDS   240000 perm   75 sec   (3190 perm/sec)   p_kst 2.574583e-02   p_cons 3.434583e-02   p_joint 3.662500e-03

Joint ci ratio: 1.397800e-01	ci left: 2.916746e-03	ci right 3.358898e-03	k: 783	n:250000
Cons ci ratio: 4.156700e-02	ci left: 3.363750e-02	ci right 3.506932e-02	k: 8587	n:250000
KS ci ratio: 4.824500e-02	ci left: 2.510694e-02	ci right 2.635209e-02	k: 6431	n:250000
IDS   250000 perm   80 sec   (3141 perm/sec)   p_kst 2.572400e-02   p_cons 3.434800e-02   p_joint 3.132000e-03

Joint ci ratio: 1.262175e-01	ci left: 3.462797e-03	ci right 3.932988e-03	k: 960	n:260000
Cons ci ratio: 4.075630e-02	ci left: 3.365702e-02	ci right 3.506108e-02	k: 8932	n:260000
KS ci ratio: 4.723670e-02	ci left: 2.519398e-02	ci right 2.641662e-02	k: 6708	n:260000
IDS   260000 perm   84 sec   (3087 perm/sec)   p_kst 2.580000e-02   p_cons 3.435385e-02   p_joint 3.692308e-03

Joint ci ratio: 1.232989e-01	ci left: 3.499603e-03	ci right 3.963002e-03	k: 1006	n:270000
Cons ci ratio: 3.998457e-02	ci left: 3.368635e-02	ci right 3.506441e-02	k: 9280	n:270000
KS ci ratio: 4.637433e-02	ci left: 2.518327e-02	ci right 2.638249e-02	k: 6960	n:270000
IDS   270000 perm   89 sec   (3041 perm/sec)   p_kst 2.577778e-02   p_cons 3.437037e-02   p_joint 3.725926e-03

Joint ci ratio: 1.210362e-01	ci left: 3.506185e-03	ci right 3.961325e-03	k: 1044	n:280000
Cons ci ratio: 3.928677e-02	ci left: 3.366076e-02	ci right 3.501319e-02	k: 9613	n:280000
KS ci ratio: 4.558998e-02	ci left: 2.513820e-02	ci right 2.631450e-02	k: 7202	n:280000
IDS   280000 perm   93 sec   (3003 perm/sec)   p_kst 2.572143e-02   p_cons 3.433214e-02   p_joint 3.728571e-03

Joint ci ratio: 1.103692e-01	ci left: 4.091919e-03	ci right 4.573242e-03	k: 1255	n:290000
Cons ci ratio: 3.859617e-02	ci left: 3.368495e-02	ci right 3.501403e-02	k: 9960	n:290000
KS ci ratio: 4.479166e-02	ci left: 2.515438e-02	ci right 2.631029e-02	k: 7461	n:290000
IDS   290000 perm   98 sec   (2967 perm/sec)   p_kst 2.572759e-02   p_cons 3.434483e-02   p_joint 4.327586e-03

Joint ci ratio: 1.081931e-01	ci left: 4.120878e-03	ci right 4.595441e-03	k: 1306	n:300000
Cons ci ratio: 3.801336e-02	ci left: 3.358222e-02	ci right 3.488680e-02	k: 10269	n:300000
KS ci ratio: 4.395504e-02	ci left: 2.525869e-02	ci right 2.639716e-02	k: 7747	n:300000
IDS   300000 perm   102 sec   (2931 perm/sec)   p_kst 2.582333e-02   p_cons 3.423000e-02   p_joint 4.353333e-03

Joint ci ratio: 8.874298e-02	ci left: 5.977163e-03	ci right 6.535354e-03	k: 1938	n:310000
Cons ci ratio: 3.734484e-02	ci left: 3.368125e-02	ci right 3.496618e-02	k: 10639	n:310000
KS ci ratio: 4.323548e-02	ci left: 2.527346e-02	ci right 2.639349e-02	k: 8007	n:310000
IDS   310000 perm   107 sec   (2896 perm/sec)   p_kst 2.582903e-02   p_cons 3.431935e-02   p_joint 6.251613e-03

Outputting figure to mutsig2_images.part000000000083/IDS.2_1719_310000_0.025829_0.034319_0.0062516.png
                gene_name: IDS
               theta_stop: 0.089 
                    nperm: 310000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.0063 
     ci_joint_bounds_left: 0.0060 
    ci_joint_bounds_right: 0.0065 

Current progress: 77 percent done.
IFNA13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.829259e-02	ci left: 8.135465e-01	ci right 8.286659e-01	k: 8212	n:10000
Cons ci ratio: 4.002586e-02	ci left: 4.796566e-01	ci right 4.993495e-01	k: 4895	n:10000
KS ci ratio: 2.402065e-02	ci left: 7.181531e-01	ci right 7.357145e-01	k: 7270	n:10000
IFNA13   10000 perm   1 sec   (6828 perm/sec)   p_kst 7.270000e-01   p_cons 4.895000e-01   p_joint 8.212000e-01

Outputting figure to mutsig2_images.part000000000083/IFNA13.2_577_10000_0.727_0.4895_0.8212.png
                gene_name: IFNA13
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 79 percent done.
IFNA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.850386e-02	ci left: 6.446834e-01	ci right 6.634268e-01	k: 6541	n:10000
Cons ci ratio: 1.820536e-02	ci left: 8.149692e-01	ci right 8.300424e-01	k: 8226	n:10000
KS ci ratio: 7.426411e-02	ci left: 2.097433e-01	ci right 2.260214e-01	k: 2178	n:10000
IFNA4   10000 perm   2 sec   (4556 perm/sec)   p_kst 2.178000e-01   p_cons 8.226000e-01   p_joint 6.541000e-01

Outputting figure to mutsig2_images.part000000000083/IFNA4.2_574_10000_0.2178_0.8226_0.6541.png
                gene_name: IFNA4
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 81 percent done.
IFNAR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.692006e-02	ci left: 6.702522e-01	ci right 6.886432e-01	k: 6795	n:10000
KS ci ratio: 5.424714e-03	ci left: 9.784504e-01	ci right 9.838641e-01	k: 9813	n:10000
IFNAR2   10000 perm   2 sec   (5449 perm/sec)   p_kst 9.813000e-01   p_cons 6.795000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000083/IFNAR2.2_1740_10000_0.9813_0.6795_1.png
                gene_name: IFNAR2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
IFNE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.027488e-02	ci left: 4.765590e-01	ci right 4.962490e-01	k: 4864	n:10000
Cons ci ratio: 4.954487e-02	ci left: 3.753480e-01	ci right 3.945190e-01	k: 3849	n:10000
KS ci ratio: 9.416248e-02	ci left: 1.407013e-01	ci right 1.547046e-01	k: 1476	n:10000
IFNE   10000 perm   1 sec   (6733 perm/sec)   p_kst 1.476000e-01   p_cons 3.849000e-01   p_joint 4.864000e-01

Outputting figure to mutsig2_images.part000000000083/IFNE.2_631_10000_0.1476_0.3849_0.4864.png
                gene_name: IFNE
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 86 percent done.
IFNGR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.470529e-02	ci left: 7.067471e-01	ci right 7.245272e-01	k: 7157	n:10000
Cons ci ratio: 2.761474e-02	ci left: 6.589740e-01	ci right 6.775279e-01	k: 6683	n:10000
KS ci ratio: 4.137052e-02	ci left: 4.631735e-01	ci right 4.828422e-01	k: 4730	n:10000
IFNGR2   10000 perm   2 sec   (5997 perm/sec)   p_kst 4.730000e-01   p_cons 6.683000e-01   p_joint 7.157000e-01

Outputting figure to mutsig2_images.part000000000083/IFNGR2.2_1042_10000_0.473_0.6683_0.7157.png
                gene_name: IFNGR2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 88 percent done.
IFRD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
Cons ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
KS ci ratio: 7.582348e-02	ci left: 2.028409e-01	ci right 2.189279e-01	k: 2108	n:10000
IFRD2   10000 perm   2 sec   (6658 perm/sec)   p_kst 2.108000e-01   p_cons 1.130000e-02   p_joint 1.130000e-02

Joint ci ratio: 2.261475e-01	ci left: 1.312511e-02	ci right 1.651809e-02	k: 295	n:20000
Cons ci ratio: 2.261475e-01	ci left: 1.312511e-02	ci right 1.651809e-02	k: 295	n:20000
KS ci ratio: 5.344736e-02	ci left: 2.062536e-01	ci right 2.176302e-01	k: 4238	n:20000
IFRD2   20000 perm   4 sec   (5662 perm/sec)   p_kst 2.119000e-01   p_cons 1.475000e-02   p_joint 1.475000e-02

Joint ci ratio: 1.815619e-01	ci left: 1.390964e-02	ci right 1.671870e-02	k: 458	n:30000
Cons ci ratio: 1.815619e-01	ci left: 1.390964e-02	ci right 1.671870e-02	k: 458	n:30000
KS ci ratio: 4.393141e-02	ci left: 2.051050e-01	ci right 2.143513e-01	k: 6291	n:30000
IFRD2   30000 perm   6 sec   (5332 perm/sec)   p_kst 2.097000e-01   p_cons 1.526667e-02   p_joint 1.526667e-02

Joint ci ratio: 1.573685e-01	ci left: 1.407186e-02	ci right 1.649925e-02	k: 610	n:40000
Cons ci ratio: 1.573685e-01	ci left: 1.407186e-02	ci right 1.649925e-02	k: 610	n:40000
KS ci ratio: 3.818213e-02	ci left: 2.045525e-01	ci right 2.125398e-01	k: 8341	n:40000
IFRD2   40000 perm   8 sec   (5157 perm/sec)   p_kst 2.085250e-01   p_cons 1.525000e-02   p_joint 1.525000e-02

Joint ci ratio: 1.390770e-01	ci left: 1.455130e-02	ci right 1.674546e-02	k: 781	n:50000
Cons ci ratio: 1.390770e-01	ci left: 1.455130e-02	ci right 1.674546e-02	k: 781	n:50000
KS ci ratio: 3.405526e-02	ci left: 2.059002e-01	ci right 2.130536e-01	k: 10473	n:50000
IFRD2   50000 perm   10 sec   (5006 perm/sec)   p_kst 2.094600e-01   p_cons 1.562000e-02   p_joint 1.562000e-02

Joint ci ratio: 1.263726e-01	ci left: 1.478505e-02	ci right 1.679552e-02	k: 946	n:60000
Cons ci ratio: 1.263726e-01	ci left: 1.478505e-02	ci right 1.679552e-02	k: 946	n:60000
KS ci ratio: 3.103623e-02	ci left: 2.067632e-01	ci right 2.132982e-01	k: 12601	n:60000
IFRD2   60000 perm   12 sec   (4886 perm/sec)   p_kst 2.100167e-01   p_cons 1.576667e-02   p_joint 1.576667e-02

Joint ci ratio: 1.188049e-01	ci left: 1.440371e-02	ci right 1.623679e-02	k: 1071	n:70000
Cons ci ratio: 1.188049e-01	ci left: 1.440371e-02	ci right 1.623679e-02	k: 1071	n:70000
KS ci ratio: 2.868871e-02	ci left: 2.075276e-01	ci right 2.135822e-01	k: 14738	n:70000
IFRD2   70000 perm   15 sec   (4776 perm/sec)   p_kst 2.105429e-01   p_cons 1.530000e-02   p_joint 1.530000e-02

Joint ci ratio: 1.121185e-01	ci left: 1.420554e-02	ci right 1.590490e-02	k: 1203	n:80000
Cons ci ratio: 1.121185e-01	ci left: 1.420554e-02	ci right 1.590490e-02	k: 1203	n:80000
KS ci ratio: 2.687077e-02	ci left: 2.072938e-01	ci right 2.129522e-01	k: 16809	n:80000
IFRD2   80000 perm   17 sec   (4675 perm/sec)   p_kst 2.101125e-01   p_cons 1.503750e-02   p_joint 1.503750e-02

Joint ci ratio: 1.054892e-01	ci left: 1.431337e-02	ci right 1.591810e-02	k: 1359	n:90000
Cons ci ratio: 1.054892e-01	ci left: 1.431337e-02	ci right 1.591810e-02	k: 1359	n:90000
KS ci ratio: 2.536479e-02	ci left: 2.070553e-01	ci right 2.123857e-01	k: 18874	n:90000
IFRD2   90000 perm   20 sec   (4577 perm/sec)   p_kst 2.097111e-01   p_cons 1.510000e-02   p_joint 1.510000e-02

Joint ci ratio: 1.004855e-01	ci left: 1.423621e-02	ci right 1.575211e-02	k: 1498	n:100000
Cons ci ratio: 1.004855e-01	ci left: 1.423621e-02	ci right 1.575211e-02	k: 1498	n:100000
KS ci ratio: 2.408367e-02	ci left: 2.069115e-01	ci right 2.119654e-01	k: 20943	n:100000
IFRD2   100000 perm   22 sec   (4482 perm/sec)   p_kst 2.094300e-01   p_cons 1.498000e-02   p_joint 1.498000e-02

Joint ci ratio: 9.577679e-02	ci left: 1.428107e-02	ci right 1.572648e-02	k: 1649	n:110000
Cons ci ratio: 9.577679e-02	ci left: 1.428107e-02	ci right 1.572648e-02	k: 1649	n:110000
KS ci ratio: 2.295809e-02	ci left: 2.070982e-01	ci right 2.119171e-01	k: 23045	n:110000
IFRD2   110000 perm   25 sec   (4393 perm/sec)   p_kst 2.095000e-01   p_cons 1.499091e-02   p_joint 1.499091e-02

Outputting figure to mutsig2_images.part000000000083/IFRD2.2_1569_110000_0.2095_0.014991_0.014991.png
                gene_name: IFRD2
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.016 

Current progress: 91 percent done.
IFT57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.857947e-02	ci left: 6.434762e-01	ci right 6.622347e-01	k: 6529	n:10000
Cons ci ratio: 2.228785e-02	ci left: 7.471549e-01	ci right 7.640960e-01	k: 7557	n:10000
KS ci ratio: 3.384917e-02	ci left: 5.630346e-01	ci right 5.825230e-01	k: 5728	n:10000
IFT57   10000 perm   2 sec   (6501 perm/sec)   p_kst 5.728000e-01   p_cons 7.557000e-01   p_joint 6.529000e-01

Outputting figure to mutsig2_images.part000000000083/IFT57.2_1334_10000_0.5728_0.7557_0.6529.png
                gene_name: IFT57
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 93 percent done.
IGF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.602251e-02	ci left: 5.322739e-01	ci right 5.519016e-01	k: 5421	n:10000
KS ci ratio: 1.748396e-02	ci left: 8.266621e-01	ci right 8.413428e-01	k: 8341	n:10000
IGF1   10000 perm   1 sec   (6720 perm/sec)   p_kst 8.341000e-01   p_cons 5.421000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000083/IGF1.2_687_10000_0.8341_0.5421_1.png
                gene_name: IGF1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
IGFBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.651450e-02	ci left: 8.421365e-01	ci right 8.562594e-01	k: 8493	n:10000
Cons ci ratio: 1.392492e-02	ci left: 8.816556e-01	ci right 8.941174e-01	k: 8880	n:10000
KS ci ratio: 1.471006e-01	ci left: 6.140379e-02	ci right 7.125068e-02	k: 662	n:10000
IGFBP1   10000 perm   1 sec   (6687 perm/sec)   p_kst 6.620000e-02   p_cons 8.880000e-01   p_joint 8.493000e-01

Joint ci ratio: 4.277820e-02	ci left: 2.893307e-01	ci right 3.020287e-01	k: 5913	n:20000
Cons ci ratio: 1.021017e-02	ci left: 8.759749e-01	ci right 8.850142e-01	k: 17611	n:20000
KS ci ratio: 1.028190e-01	ci left: 6.425622e-02	ci right 7.127008e-02	k: 1354	n:20000
IGFBP1   20000 perm   3 sec   (5887 perm/sec)   p_kst 6.770000e-02   p_cons 8.805500e-01   p_joint 2.956500e-01

Joint ci ratio: 2.918691e-02	ci left: 3.699827e-01	ci right 3.809748e-01	k: 11264	n:30000
Cons ci ratio: 8.363327e-03	ci left: 8.761342e-01	ci right 8.835254e-01	k: 26396	n:30000
KS ci ratio: 8.317542e-02	ci left: 6.605905e-02	ci right 7.182476e-02	k: 2067	n:30000
IGFBP1   30000 perm   5 sec   (5574 perm/sec)   p_kst 6.890000e-02   p_cons 8.798667e-01   p_joint 3.754667e-01

Outputting figure to mutsig2_images.part000000000083/IGFBP1.2_796_30000_0.0689_0.87987_0.37547.png
                gene_name: IGFBP1
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 98 percent done.
IGFBP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.809983e-01	ci left: 4.073298e-02	ci right 4.893483e-02	k: 447	n:10000
Cons ci ratio: 5.697292e-02	ci left: 3.120513e-01	ci right 3.304529e-01	k: 3212	n:10000
KS ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
IGFBP4   10000 perm   1 sec   (6718 perm/sec)   p_kst 4.450000e-02   p_cons 3.212000e-01   p_joint 4.470000e-02

Joint ci ratio: 1.263723e-01	ci left: 4.299245e-02	ci right 4.884048e-02	k: 917	n:20000
Cons ci ratio: 4.020761e-02	ci left: 3.156252e-01	ci right 3.286266e-01	k: 6442	n:20000
KS ci ratio: 1.270263e-01	ci left: 4.255610e-02	ci right 4.837698e-02	k: 908	n:20000
IGFBP4   20000 perm   4 sec   (5676 perm/sec)   p_kst 4.540000e-02   p_cons 3.221000e-01   p_joint 4.585000e-02

Joint ci ratio: 1.046249e-01	ci left: 4.235666e-02	ci right 4.706535e-02	k: 1340	n:30000
Cons ci ratio: 3.294121e-02	ci left: 3.153529e-01	ci right 3.259485e-01	k: 9619	n:30000
KS ci ratio: 1.039371e-01	ci left: 4.290919e-02	ci right 4.764604e-02	k: 1357	n:30000
IGFBP4   30000 perm   6 sec   (5263 perm/sec)   p_kst 4.523333e-02   p_cons 3.206333e-01   p_joint 4.466667e-02

Joint ci ratio: 7.469018e-02	ci left: 6.201368e-02	ci right 6.684979e-02	k: 2576	n:40000
Cons ci ratio: 2.852084e-02	ci left: 3.161764e-01	ci right 3.253496e-01	k: 12830	n:40000
KS ci ratio: 8.971882e-02	ci left: 4.350276e-02	ci right 4.761354e-02	k: 1821	n:40000
IGFBP4   40000 perm   8 sec   (5081 perm/sec)   p_kst 4.552500e-02   p_cons 3.207500e-01   p_joint 6.440000e-02

Outputting figure to mutsig2_images.part000000000083/IGFBP4.2_793_40000_0.045525_0.32075_0.0644.png
                gene_name: IGFBP4
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.067 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000083
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 83 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1644>
Subject: Job 9893974: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1644>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000084> was used as the working directory.
Started at Sat Oct  6 00:13:27 2012
Results reported at Sat Oct  6 00:21:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000084.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000084.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 84  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000084.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    510.46 sec.
    Max Memory :      3612 MB
    Max Swap   :      6006 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
84
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 84
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 84: processing genes 7483 - 7573
Calculating significance of each gene.
Using projection method.
7483	IGFL3	1.529802e-01
7484	IGFL4	1
7485	IGHMBP2	8.125001e-01
7486	IGJ	1.775548e-01
7487	IGLL1	5.566238e-01
7488	IGLL5	1
7489	IGLON5	5.486709e-02
7490	IGSF1	2.324013e-01
7491	IGSF10	2.891281e-01
7492	IGSF11	3.144331e-01
7493	IGSF21	2.043872e-01
7494	IGSF22	8.287629e-01
7495	IGSF3	8.787667e-01
7496	IGSF5	7.463650e-03
7497	IGSF6	1
7498	IGSF8	3.679431e-01
7499	IGSF9	3.724283e-01
7500	IGSF9B	6.367959e-01
7501	IHH	8.600327e-01
7502	IK	7.729016e-01
7503	IKBIP	8.303156e-01
7504	IKBKAP	9.659640e-01
7505	IKBKB	6.353672e-01
7506	IKBKE	8.670372e-01
7507	IKZF1	5.879206e-01
7508	IKZF2	1.232493e-01
7509	IKZF3	3.830477e-01
7510	IKZF4	9.617406e-01
7511	IKZF5	1
7512	IL10	2.949101e-01
7513	IL10RA	5.748962e-01
7514	IL10RB	9.538330e-02
7515	IL11	3.982499e-01
7516	IL11RA	8.454690e-01
7517	IL12A	7.492398e-01
7518	IL12B	5.434316e-01
7519	IL12RB1	7.089375e-01
7520	IL12RB2	1.934706e-01
7521	IL13	5.051963e-01
7522	IL13RA1	4.171988e-01
7523	IL13RA2	1.610225e-01
7524	IL15	2.901401e-01
7525	IL15RA	4.239888e-01
7526	IL16	5.689923e-01
7527	IL17A	4.749152e-02
7528	IL17B	1
In gene IL17C the following bins exceed PROBCAP:
    COAD-AA-3854	categ 6	N = 606     n = 1	mu =   2.96e-07
7529	IL17C	3.209100e-01
7530	IL17D	1
7531	IL17F	4.436771e-01
7532	IL17RA	5.984388e-02
7533	IL17RB	8.264280e-01
7534	IL17RC	7.596195e-01
7535	IL17RD	3.693103e-01
7536	IL17RE	1
7537	IL17REL	7.201002e-01
7538	IL18	1
7539	IL18BP	2.657767e-01
7540	IL18R1	2.909918e-04
7541	IL18RAP	2.824163e-01
7542	IL19	4.320546e-01
7543	IL1A	5.239729e-01
7544	IL1B	7.404489e-01
7545	IL1F10	1
7546	IL1F5	1.908340e-01
7547	IL1F6	4.382815e-01
7548	IL1F7	6.539912e-01
7549	IL1F8	1
7550	IL1F9	1.872044e-01
7551	IL1R1	2.555715e-01
7552	IL1R2	9.737425e-03
7553	IL1RAP	9.236204e-01
7554	IL1RAPL1	6.896920e-02
7555	IL1RAPL2	1.051040e-05
7556	IL1RL1	5.017041e-01
7557	IL1RL2	4.931253e-01
7558	IL1RN	1.991487e-02
7559	IL2	3.498388e-03
7560	IL20	3.615016e-02
7561	IL20RA	1.136693e-01
7562	IL20RB	5.192273e-01
7563	IL21	4.819914e-02
7564	IL21R	1.349291e-01
7565	IL22	1.002016e-01
7566	IL22RA1	9.102848e-01
7567	IL22RA2	1
7568	IL23A	1
7569	IL23R	6.866319e-01
7570	IL24	9.598458e-02
7571	IL25	4.266961e-01
7572	IL26	4.000178e-02
7573	IL27	5.857910e-01
Done

Running MutSig 2:
Scatter job 84: processing genes 7483 - 7573
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
IGSF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.745920e-02	ci left: 6.614910e-01	ci right 6.800095e-01	k: 6708	n:10000
Cons ci ratio: 4.964965e-02	ci left: 3.743530e-01	ci right 3.935147e-01	k: 3839	n:10000
KS ci ratio: 3.808135e-02	ci left: 5.045512e-01	ci right 5.242404e-01	k: 5144	n:10000
IGSF10   10000 perm   3 sec   (3129 perm/sec)   p_kst 5.144000e-01   p_cons 3.839000e-01   p_joint 6.708000e-01

Outputting figure to mutsig2_images.part000000000084/IGSF10.21_7944_10000_0.5144_0.3839_0.6708.png
                gene_name: IGSF10
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 2 percent done.
IL18R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.600744e-02	ci left: 3.194942e-01	ci right 3.380056e-01	k: 3287	n:10000
Cons ci ratio: 1.684207e-02	ci left: 8.369418e-01	ci right 8.512571e-01	k: 8442	n:10000
KS ci ratio: 8.464158e-02	ci left: 1.690728e-01	ci right 1.841161e-01	k: 1765	n:10000
IL18R1   10000 perm   2 sec   (5257 perm/sec)   p_kst 1.765000e-01   p_cons 8.442000e-01   p_joint 3.287000e-01

Outputting figure to mutsig2_images.part000000000084/IL18R1.10_1666_10000_0.1765_0.8442_0.3287.png
                gene_name: IL18R1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 4 percent done.
IL1RAPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.331963e-02	ci left: 5.707557e-01	ci right 5.901974e-01	k: 5805	n:10000
Cons ci ratio: 1.840208e-03	ci left: 9.967917e-01	ci right 9.986996e-01	k: 9979	n:10000
KS ci ratio: 5.871592e-02	ci left: 2.991568e-01	ci right 3.173550e-01	k: 3082	n:10000
IL1RAPL2   10000 perm   2 sec   (5112 perm/sec)   p_kst 3.082000e-01   p_cons 9.979000e-01   p_joint 5.805000e-01

Outputting figure to mutsig2_images.part000000000084/IL1RAPL2.10_2101_10000_0.3082_0.9979_0.5805.png
                gene_name: IL1RAPL2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 6 percent done.
IGSF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.196701e-02	ci left: 2.768594e-01	ci right 2.946656e-01	k: 2857	n:10000
Cons ci ratio: 1.052060e-01	ci left: 1.154507e-01	ci right 1.283705e-01	k: 1218	n:10000
KS ci ratio: 4.345259e-02	ci left: 4.388183e-01	ci right 4.584117e-01	k: 4486	n:10000
IGSF1   10000 perm   2 sec   (4778 perm/sec)   p_kst 4.486000e-01   p_cons 1.218000e-01   p_joint 2.857000e-01

Joint ci ratio: 4.815728e-02	ci left: 2.428203e-01	ci right 2.548528e-01	k: 4976	n:20000
Cons ci ratio: 7.325148e-02	ci left: 1.206431e-01	ci right 1.298661e-01	k: 2504	n:20000
KS ci ratio: 3.007218e-02	ci left: 4.523748e-01	ci right 4.662370e-01	k: 9186	n:20000
IGSF1   20000 perm   5 sec   (4362 perm/sec)   p_kst 4.593000e-01   p_cons 1.252000e-01   p_joint 2.488000e-01

Outputting figure to mutsig2_images.part000000000084/IGSF1.9_4164_20000_0.4593_0.1252_0.2488.png
                gene_name: IGSF1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 7 percent done.
IL16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.435067e-02	ci left: 4.287437e-01	ci right 4.482921e-01	k: 4385	n:10000
Cons ci ratio: 1.730686e-02	ci left: 8.295109e-01	ci right 8.440923e-01	k: 8369	n:10000
KS ci ratio: 6.437385e-02	ci left: 2.617124e-01	ci right 2.792215e-01	k: 2704	n:10000
IL16   10000 perm   2 sec   (4520 perm/sec)   p_kst 2.704000e-01   p_cons 8.369000e-01   p_joint 4.385000e-01

Outputting figure to mutsig2_images.part000000000084/IL16.9_4071_10000_0.2704_0.8369_0.4385.png
                gene_name: IL16
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 9 percent done.
IGSF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.236922e-02	ci left: 3.495901e-01	ci right 3.684921e-01	k: 3590	n:10000
Cons ci ratio: 6.599437e-02	ci left: 2.521161e-01	ci right 2.694235e-01	k: 2607	n:10000
KS ci ratio: 1.092784e-01	ci left: 1.077365e-01	ci right 1.202894e-01	k: 1139	n:10000
IGSF5   10000 perm   2 sec   (5859 perm/sec)   p_kst 1.139000e-01   p_cons 2.607000e-01   p_joint 3.590000e-01

Joint ci ratio: 6.369996e-02	ci left: 1.541050e-01	ci right 1.642943e-01	k: 3183	n:20000
Cons ci ratio: 4.891623e-02	ci left: 2.370686e-01	ci right 2.490062e-01	k: 4860	n:20000
KS ci ratio: 7.603624e-02	ci left: 1.128222e-01	ci right 1.217894e-01	k: 2345	n:20000
IGSF5   20000 perm   4 sec   (5032 perm/sec)   p_kst 1.172500e-01   p_cons 2.430000e-01   p_joint 1.591500e-01

Outputting figure to mutsig2_images.part000000000084/IGSF5.8_1260_20000_0.11725_0.243_0.15915.png
                gene_name: IGSF5
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 11 percent done.
IGSF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.478182e-01	ci left: 6.082454e-02	ci right 7.063030e-02	k: 656	n:10000
Cons ci ratio: 2.067437e-01	ci left: 3.110398e-02	ci right 3.837033e-02	k: 346	n:10000
KS ci ratio: 4.761308e-02	ci left: 3.942620e-01	ci right 4.135940e-01	k: 4039	n:10000
IGSF9   10000 perm   2 sec   (4950 perm/sec)   p_kst 4.039000e-01   p_cons 3.460000e-02   p_joint 6.560000e-02

Joint ci ratio: 1.195048e-01	ci left: 4.799150e-02	ci right 5.413986e-02	k: 1020	n:20000
Cons ci ratio: 1.522032e-01	ci left: 2.965219e-02	ci right 3.458507e-02	k: 641	n:20000
KS ci ratio: 3.254684e-02	ci left: 4.134960e-01	ci right 4.272272e-01	k: 8407	n:20000
IGSF9   20000 perm   5 sec   (4432 perm/sec)   p_kst 4.203500e-01   p_cons 3.205000e-02   p_joint 5.100000e-02

Joint ci ratio: 7.996158e-02	ci left: 7.119339e-02	ci right 7.715605e-02	k: 2224	n:30000
Cons ci ratio: 1.280313e-01	ci left: 2.835696e-02	ci right 3.226803e-02	k: 908	n:30000
KS ci ratio: 2.645829e-02	ci left: 4.169015e-01	ci right 4.281135e-01	k: 12675	n:30000
IGSF9   30000 perm   7 sec   (4265 perm/sec)   p_kst 4.225000e-01   p_cons 3.026667e-02   p_joint 7.413333e-02

Joint ci ratio: 6.853629e-02	ci left: 7.300312e-02	ci right 7.820869e-02	k: 3023	n:40000
Cons ci ratio: 1.092623e-01	ci left: 2.946915e-02	ci right 3.289936e-02	k: 1246	n:40000
KS ci ratio: 2.291625e-02	ci left: 4.176027e-01	ci right 4.273086e-01	k: 16898	n:40000
IGSF9   40000 perm   10 sec   (4162 perm/sec)   p_kst 4.224500e-01   p_cons 3.115000e-02   p_joint 7.557500e-02

Joint ci ratio: 6.098725e-02	ci left: 7.398767e-02	ci right 7.866166e-02	k: 3815	n:50000
Cons ci ratio: 9.804437e-02	ci left: 2.945906e-02	ci right 3.251571e-02	k: 1548	n:50000
KS ci ratio: 2.046144e-02	ci left: 4.189638e-01	ci right 4.276451e-01	k: 21165	n:50000
IGSF9   50000 perm   12 sec   (4081 perm/sec)   p_kst 4.233000e-01   p_cons 3.096000e-02   p_joint 7.630000e-02

Outputting figure to mutsig2_images.part000000000084/IGSF9.8_3620_50000_0.4233_0.03096_0.0763.png
                gene_name: IGSF9
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.079 

Current progress: 13 percent done.
IGSF9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.319447e-01	ci left: 7.572512e-02	ci right 8.652038e-02	k: 810	n:10000
Cons ci ratio: 2.055197e-01	ci left: 3.148396e-02	ci right 3.879009e-02	k: 350	n:10000
KS ci ratio: 4.498665e-02	ci left: 4.217637e-01	ci right 4.412762e-01	k: 4315	n:10000
IGSF9B   10000 perm   2 sec   (4842 perm/sec)   p_kst 4.315000e-01   p_cons 3.500000e-02   p_joint 8.100000e-02

Joint ci ratio: 8.900991e-02	ci left: 8.445180e-02	ci right 9.236834e-02	k: 1767	n:20000
Cons ci ratio: 1.441613e-01	ci left: 3.307475e-02	ci right 3.826138e-02	k: 712	n:20000
KS ci ratio: 3.272445e-02	ci left: 4.108524e-01	ci right 4.245716e-01	k: 8354	n:20000
IGSF9B   20000 perm   5 sec   (4401 perm/sec)   p_kst 4.177000e-01   p_cons 3.560000e-02   p_joint 8.835000e-02

Joint ci ratio: 6.985254e-02	ci left: 9.167188e-02	ci right 9.834013e-02	k: 2849	n:30000
Cons ci ratio: 1.105372e-01	ci left: 3.800521e-02	ci right 4.248439e-02	k: 1206	n:30000
KS ci ratio: 2.670924e-02	ci left: 4.123104e-01	ci right 4.235055e-01	k: 12537	n:30000
IGSF9B   30000 perm   7 sec   (4218 perm/sec)   p_kst 4.179000e-01   p_cons 4.020000e-02   p_joint 9.496667e-02

Joint ci ratio: 4.916635e-02	ci left: 1.337433e-01	ci right 1.405095e-01	k: 5484	n:40000
Cons ci ratio: 9.598766e-02	ci left: 3.810059e-02	ci right 4.196655e-02	k: 1600	n:40000
KS ci ratio: 2.307309e-02	ci left: 4.142831e-01	ci right 4.239786e-01	k: 16765	n:40000
IGSF9B   40000 perm   10 sec   (4089 perm/sec)   p_kst 4.191250e-01   p_cons 4.000000e-02   p_joint 1.371000e-01

Outputting figure to mutsig2_images.part000000000084/IGSF9B.8_4126_40000_0.41913_0.04_0.1371.png
                gene_name: IGSF9B
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 15 percent done.
IL1RAPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.616482e-02	ci left: 8.476398e-01	ci right 8.615529e-01	k: 8547	n:10000
Cons ci ratio: 4.195586e-02	ci left: 4.561840e-01	ci right 4.758358e-01	k: 4660	n:10000
KS ci ratio: 2.392387e-02	ci left: 7.197687e-01	ci right 7.372980e-01	k: 7286	n:10000
IL1RAPL1   10000 perm   2 sec   (5154 perm/sec)   p_kst 7.286000e-01   p_cons 4.660000e-01   p_joint 8.547000e-01

Outputting figure to mutsig2_images.part000000000084/IL1RAPL1.8_2131_10000_0.7286_0.466_0.8547.png
                gene_name: IL1RAPL1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 17 percent done.
IL1R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.293129e-02	ci left: 5.764730e-01	ci right 5.958768e-01	k: 5862	n:10000
Cons ci ratio: 7.483523e-02	ci left: 2.071791e-01	ci right 2.233870e-01	k: 2152	n:10000
KS ci ratio: 6.184739e-03	ci left: 9.725959e-01	ci right 9.787227e-01	k: 9758	n:10000
IL1R2   10000 perm   2 sec   (5805 perm/sec)   p_kst 9.758000e-01   p_cons 2.152000e-01   p_joint 5.862000e-01

Outputting figure to mutsig2_images.part000000000084/IL1R2.7_1229_10000_0.9758_0.2152_0.5862.png
                gene_name: IL1R2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 19 percent done.
IKZF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.924317e-02	ci left: 2.953892e-01	ci right 3.135248e-01	k: 3044	n:10000
Cons ci ratio: 2.083093e-02	ci left: 7.715474e-01	ci right 7.878893e-01	k: 7798	n:10000
KS ci ratio: 8.951618e-02	ci left: 1.536497e-01	ci right 1.681484e-01	k: 1608	n:10000
IKZF2   10000 perm   2 sec   (4792 perm/sec)   p_kst 1.608000e-01   p_cons 7.798000e-01   p_joint 3.044000e-01

Outputting figure to mutsig2_images.part000000000084/IKZF2.6_1609_10000_0.1608_0.7798_0.3044.png
                gene_name: IKZF2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 20 percent done.
IL12RB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.387659e-02	ci left: 4.340298e-01	ci right 4.536029e-01	k: 4438	n:10000
KS ci ratio: 1.217355e-02	ci left: 9.063796e-01	ci right 9.175790e-01	k: 9121	n:10000
IL12RB2   10000 perm   2 sec   (4767 perm/sec)   p_kst 9.121000e-01   p_cons 4.438000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IL12RB2.6_2649_10000_0.9121_0.4438_1.png
                gene_name: IL12RB2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
IL17RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.340422e-02	ci left: 7.284549e-01	ci right 7.458068e-01	k: 7372	n:10000
Cons ci ratio: 4.939873e-02	ci left: 3.767412e-01	ci right 3.959251e-01	k: 3863	n:10000
KS ci ratio: 3.857979e-02	ci left: 4.980503e-01	ci right 5.177451e-01	k: 5079	n:10000
IL17RA   10000 perm   2 sec   (4137 perm/sec)   p_kst 5.079000e-01   p_cons 3.863000e-01   p_joint 7.372000e-01

Outputting figure to mutsig2_images.part000000000084/IL17RA.6_2653_10000_0.5079_0.3863_0.7372.png
                gene_name: IL17RA
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 24 percent done.
IGSF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.468708e-02	ci left: 7.070498e-01	ci right 7.248243e-01	k: 7160	n:10000
Cons ci ratio: 2.520369e-02	ci left: 6.984744e-01	ci right 7.164046e-01	k: 7075	n:10000
KS ci ratio: 4.295548e-02	ci left: 4.445057e-01	ci right 4.641209e-01	k: 4543	n:10000
IGSF3   10000 perm   2 sec   (4559 perm/sec)   p_kst 4.543000e-01   p_cons 7.075000e-01   p_joint 7.160000e-01

Outputting figure to mutsig2_images.part000000000084/IGSF3.5_3689_10000_0.4543_0.7075_0.716.png
                gene_name: IGSF3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 26 percent done.
IGSF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.607495e-02	ci left: 2.017565e-01	ci right 2.178129e-01	k: 2097	n:10000
Cons ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
KS ci ratio: 1.395808e-01	ci left: 6.797633e-02	ci right 7.827401e-02	k: 730	n:10000
IGSF8   10000 perm   2 sec   (5556 perm/sec)   p_kst 7.300000e-02   p_cons 5.464000e-01   p_joint 2.097000e-01

Joint ci ratio: 7.731122e-02	ci left: 1.094793e-01	ci right 1.183333e-01	k: 2277	n:20000
Cons ci ratio: 2.534290e-02	ci left: 5.377171e-01	ci right 5.515699e-01	k: 10893	n:20000
KS ci ratio: 9.965990e-02	ci left: 6.821079e-02	ci right 7.541429e-02	k: 1435	n:20000
IGSF8   20000 perm   4 sec   (4987 perm/sec)   p_kst 7.175000e-02   p_cons 5.446500e-01   p_joint 1.138500e-01

Outputting figure to mutsig2_images.part000000000084/IGSF8.5_1866_20000_0.07175_0.54465_0.11385.png
                gene_name: IGSF8
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 28 percent done.
IL10RB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.115543e-02	ci left: 4.657702e-01	ci right 4.854441e-01	k: 4756	n:10000
Cons ci ratio: 2.191363e-02	ci left: 7.534265e-01	ci right 7.702207e-01	k: 7619	n:10000
KS ci ratio: 6.628658e-02	ci left: 2.504348e-01	ci right 2.677057e-01	k: 2590	n:10000
IL10RB   10000 perm   2 sec   (5950 perm/sec)   p_kst 2.590000e-01   p_cons 7.619000e-01   p_joint 4.756000e-01

Outputting figure to mutsig2_images.part000000000084/IL10RB.5_1006_10000_0.259_0.7619_0.4756.png
                gene_name: IL10RB
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 30 percent done.
IL17RD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.960819e-02	ci left: 6.271848e-01	ci right 6.461355e-01	k: 6367	n:10000
Cons ci ratio: 5.875724e-02	ci left: 2.988593e-01	ci right 3.170527e-01	k: 3079	n:10000
KS ci ratio: 3.299240e-02	ci left: 5.755702e-01	ci right 5.949801e-01	k: 5853	n:10000
IL17RD   10000 perm   2 sec   (5408 perm/sec)   p_kst 5.853000e-01   p_cons 3.079000e-01   p_joint 6.367000e-01

Outputting figure to mutsig2_images.part000000000084/IL17RD.5_2272_10000_0.5853_0.3079_0.6367.png
                gene_name: IL17RD
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 31 percent done.
IL20RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.277074e-01	ci left: 8.057611e-02	ci right 9.166638e-02	k: 860	n:10000
Cons ci ratio: 7.915936e-03	ci left: 9.569143e-01	ci right 9.646143e-01	k: 9609	n:10000
KS ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
IL20RA   10000 perm   2 sec   (5180 perm/sec)   p_kst 1.610000e-02   p_cons 9.609000e-01   p_joint 8.600000e-02

Joint ci ratio: 1.588432e-01	ci left: 2.719860e-02	ci right 3.193948e-02	k: 590	n:20000
Cons ci ratio: 5.741501e-03	ci left: 9.560562e-01	ci right 9.616094e-01	k: 19178	n:20000
KS ci ratio: 2.180628e-01	ci left: 1.416473e-02	ci right 1.767805e-02	k: 317	n:20000
IL20RA   20000 perm   4 sec   (4925 perm/sec)   p_kst 1.585000e-02   p_cons 9.589000e-01   p_joint 2.950000e-02

Joint ci ratio: 1.065093e-01	ci left: 4.089459e-02	ci right 4.552773e-02	k: 1295	n:30000
Cons ci ratio: 4.826038e-03	ci left: 9.541647e-01	ci right 9.588131e-01	k: 28696	n:30000
KS ci ratio: 1.745493e-01	ci left: 1.508879e-02	ci right 1.800592e-02	k: 495	n:30000
IL20RA   30000 perm   6 sec   (4801 perm/sec)   p_kst 1.650000e-02   p_cons 9.565333e-01   p_joint 4.316667e-02

Joint ci ratio: 9.221223e-02	ci left: 4.122835e-02	ci right 4.523830e-02	k: 1728	n:40000
Cons ci ratio: 4.089607e-03	ci left: 9.562949e-01	ci right 9.602382e-01	k: 38332	n:40000
KS ci ratio: 1.540725e-01	ci left: 1.469689e-02	ci right 1.717411e-02	k: 636	n:40000
IL20RA   40000 perm   9 sec   (4619 perm/sec)   p_kst 1.590000e-02   p_cons 9.583000e-01   p_joint 4.320000e-02

Joint ci ratio: 7.579390e-02	ci left: 4.885210e-02	ci right 5.272027e-02	k: 2538	n:50000
Cons ci ratio: 3.650348e-03	ci left: 9.566742e-01	ci right 9.601923e-01	k: 47923	n:50000
KS ci ratio: 1.389868e-01	ci left: 1.457062e-02	ci right 1.676614e-02	k: 782	n:50000
IL20RA   50000 perm   11 sec   (4537 perm/sec)   p_kst 1.564000e-02   p_cons 9.584600e-01   p_joint 5.076000e-02

Joint ci ratio: 8.307187e-02	ci left: 3.429488e-02	ci right 3.728357e-02	k: 2146	n:60000
Cons ci ratio: 3.415402e-03	ci left: 9.547864e-01	ci right 9.580693e-01	k: 57387	n:60000
KS ci ratio: 1.262372e-01	ci left: 1.481734e-02	ci right 1.682989e-02	k: 948	n:60000
IL20RA   60000 perm   14 sec   (4443 perm/sec)   p_kst 1.580000e-02   p_cons 9.564500e-01   p_joint 3.576667e-02

Joint ci ratio: 8.177187e-02	ci left: 3.048443e-02	ci right 3.309743e-02	k: 2224	n:70000
Cons ci ratio: 3.150305e-03	ci left: 9.552241e-01	ci right 9.582521e-01	k: 66973	n:70000
KS ci ratio: 1.126162e-01	ci left: 1.605528e-02	ci right 1.798505e-02	k: 1190	n:70000
IL20RA   70000 perm   16 sec   (4370 perm/sec)   p_kst 1.700000e-02   p_cons 9.567571e-01   p_joint 3.177143e-02

Joint ci ratio: 6.498849e-02	ci left: 4.208454e-02	ci right 4.492369e-02	k: 3479	n:80000
Cons ci ratio: 2.923381e-03	ci left: 9.559903e-01	ci right 9.588014e-01	k: 76593	n:80000
KS ci ratio: 1.060643e-01	ci left: 1.589637e-02	ci right 1.768892e-02	k: 1342	n:80000
IL20RA   80000 perm   19 sec   (4263 perm/sec)   p_kst 1.677500e-02   p_cons 9.574125e-01   p_joint 4.348750e-02

Joint ci ratio: 6.649576e-02	ci left: 3.594016e-02	ci right 3.842312e-02	k: 3345	n:90000
Cons ci ratio: 2.760701e-03	ci left: 9.559362e-01	ci right 9.585898e-01	k: 86155	n:90000
KS ci ratio: 1.002645e-01	ci left: 1.586201e-02	ci right 1.754712e-02	k: 1502	n:90000
IL20RA   90000 perm   22 sec   (4161 perm/sec)   p_kst 1.668889e-02   p_cons 9.572778e-01   p_joint 3.716667e-02

Joint ci ratio: 6.689341e-02	ci left: 3.208830e-02	ci right 3.431888e-02	k: 3319	n:100000
Cons ci ratio: 2.610598e-03	ci left: 9.562719e-01	ci right 9.587814e-01	k: 95754	n:100000
KS ci ratio: 9.523538e-02	ci left: 1.586598e-02	ci right 1.746224e-02	k: 1665	n:100000
IL20RA   100000 perm   24 sec   (4104 perm/sec)   p_kst 1.665000e-02   p_cons 9.575400e-01   p_joint 3.319000e-02

Outputting figure to mutsig2_images.part000000000084/IL20RA.5_1690_100000_0.01665_0.95754_0.03319.png
                gene_name: IL20RA
               theta_stop: 0.095 
                    nperm: 100000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 33 percent done.
IL21R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.531823e-02	ci left: 4.181748e-01	ci right 4.376672e-01	k: 4279	n:10000
KS ci ratio: 2.862992e-02	ci left: 6.426714e-01	ci right 6.614400e-01	k: 6521	n:10000
IL21R   10000 perm   2 sec   (5651 perm/sec)   p_kst 6.521000e-01   p_cons 4.279000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IL21R.5_1649_10000_0.6521_0.4279_1.png
                gene_name: IL21R
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
IGHMBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.274035e-02	ci left: 7.395713e-01	ci right 7.566839e-01	k: 7482	n:10000
Cons ci ratio: 4.969165e-02	ci left: 3.739550e-01	ci right 3.931129e-01	k: 3835	n:10000
KS ci ratio: 2.487530e-02	ci left: 7.039218e-01	ci right 7.217540e-01	k: 7129	n:10000
IGHMBP2   10000 perm   2 sec   (5494 perm/sec)   p_kst 7.129000e-01   p_cons 3.835000e-01   p_joint 7.482000e-01

Outputting figure to mutsig2_images.part000000000084/IGHMBP2.4_3042_10000_0.7129_0.3835_0.7482.png
                gene_name: IGHMBP2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 37 percent done.
IGLON5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.245524e-03	ci left: 9.797349e-01	ci right 9.849787e-01	k: 9825	n:10000
KS ci ratio: 2.093398e-02	ci left: 7.698255e-01	ci right 7.862122e-01	k: 7781	n:10000
IGLON5   10000 perm   2 sec   (6156 perm/sec)   p_kst 7.781000e-01   p_cons 9.825000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IGLON5.4_1043_10000_0.7781_0.9825_1.png
                gene_name: IGLON5
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
IGSF21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.058498e-01	ci left: 1.141806e-01	ci right 1.270413e-01	k: 1205	n:10000
Cons ci ratio: 1.100976e-01	ci left: 1.062728e-01	ci right 1.187539e-01	k: 1124	n:10000
KS ci ratio: 9.353182e-02	ci left: 1.423679e-01	ci right 1.564370e-01	k: 1493	n:10000
IGSF21   10000 perm   2 sec   (6210 perm/sec)   p_kst 1.493000e-01   p_cons 1.124000e-01   p_joint 1.205000e-01

Joint ci ratio: 7.856213e-02	ci left: 1.063343e-01	ci right 1.150793e-01	k: 2213	n:20000
Cons ci ratio: 8.085991e-02	ci left: 1.008823e-01	ci right 1.094329e-01	k: 2102	n:20000
KS ci ratio: 6.596943e-02	ci left: 1.450775e-01	ci right 1.550245e-01	k: 3000	n:20000
IGSF21   20000 perm   4 sec   (5502 perm/sec)   p_kst 1.500000e-01   p_cons 1.051000e-01   p_joint 1.106500e-01

Outputting figure to mutsig2_images.part000000000084/IGSF21.4_1444_20000_0.15_0.1051_0.11065.png
                gene_name: IGSF21
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 41 percent done.
IKBKB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.154559e-02	ci left: 1.799903e-01	ci right 1.953921e-01	k: 1876	n:10000
Cons ci ratio: 5.690767e-02	ci left: 3.125475e-01	ci right 3.309565e-01	k: 3217	n:10000
KS ci ratio: 1.032384e-01	ci left: 1.194577e-01	ci right 1.325610e-01	k: 1259	n:10000
IKBKB   10000 perm   2 sec   (5612 perm/sec)   p_kst 1.259000e-01   p_cons 3.217000e-01   p_joint 1.876000e-01

Joint ci ratio: 5.680686e-02	ci left: 1.868086e-01	ci right 1.977810e-01	k: 3845	n:20000
Cons ci ratio: 3.960326e-02	ci left: 3.222399e-01	ci right 3.353099e-01	k: 6575	n:20000
KS ci ratio: 7.123371e-02	ci left: 1.267960e-01	ci right 1.362115e-01	k: 2629	n:20000
IKBKB   20000 perm   4 sec   (5266 perm/sec)   p_kst 1.314500e-01   p_cons 3.287500e-01   p_joint 1.922500e-01

Outputting figure to mutsig2_images.part000000000084/IKBKB.4_2355_20000_0.13145_0.32875_0.19225.png
                gene_name: IKBKB
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 43 percent done.
IKBKE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.331165e-02	ci left: 1.429561e-01	ci right 1.570484e-01	k: 1499	n:10000
Cons ci ratio: 8.944993e-02	ci left: 1.538460e-01	ci right 1.683520e-01	k: 1610	n:10000
KS ci ratio: 1.153651e-01	ci left: 9.749841e-02	ci right 1.095337e-01	k: 1034	n:10000
IKBKE   10000 perm   2 sec   (5290 perm/sec)   p_kst 1.034000e-01   p_cons 1.610000e-01   p_joint 1.499000e-01

Joint ci ratio: 7.296871e-02	ci left: 1.214797e-01	ci right 1.307293e-01	k: 2521	n:20000
Cons ci ratio: 6.410752e-02	ci left: 1.524273e-01	ci right 1.625725e-01	k: 3149	n:20000
KS ci ratio: 8.237831e-02	ci left: 9.749509e-02	ci right 1.059211e-01	k: 2033	n:20000
IKBKE   20000 perm   4 sec   (4941 perm/sec)   p_kst 1.016500e-01   p_cons 1.574500e-01   p_joint 1.260500e-01

Outputting figure to mutsig2_images.part000000000084/IKBKE.4_2231_20000_0.10165_0.15745_0.12605.png
                gene_name: IKBKE
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 44 percent done.
IL18RAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.697569e-02	ci left: 6.693457e-01	ci right 6.877502e-01	k: 6786	n:10000
KS ci ratio: 5.199832e-03	ci left: 9.800565e-01	ci right 9.852569e-01	k: 9828	n:10000
IL18RAP   10000 perm   2 sec   (5432 perm/sec)   p_kst 9.828000e-01   p_cons 6.786000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IL18RAP.4_1840_10000_0.9828_0.6786_1.png
                gene_name: IL18RAP
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
IL1R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.781514e-03	ci left: 9.757832e-01	ci right 9.815332e-01	k: 9788	n:10000
Cons ci ratio: 2.136983e-02	ci left: 7.625349e-01	ci right 7.791070e-01	k: 7709	n:10000
KS ci ratio: 1.103812e-02	ci left: 9.213133e-01	ci right 9.316366e-01	k: 9266	n:10000
IL1R1   10000 perm   2 sec   (5728 perm/sec)   p_kst 9.266000e-01   p_cons 7.709000e-01   p_joint 9.788000e-01

Outputting figure to mutsig2_images.part000000000084/IL1R1.4_1750_10000_0.9266_0.7709_0.9788.png
                gene_name: IL1R1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 48 percent done.
IL1RL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.957627e-02	ci left: 3.750495e-01	ci right 3.942177e-01	k: 3846	n:10000
Cons ci ratio: 7.939167e-02	ci left: 1.881605e-01	ci right 2.038170e-01	k: 1959	n:10000
KS ci ratio: 3.395300e-02	ci left: 5.615307e-01	ci right 5.810277e-01	k: 5713	n:10000
IL1RL2   10000 perm   2 sec   (5600 perm/sec)   p_kst 5.713000e-01   p_cons 1.959000e-01   p_joint 3.846000e-01

Outputting figure to mutsig2_images.part000000000084/IL1RL2.4_1772_10000_0.5713_0.1959_0.3846.png
                gene_name: IL1RL2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 50 percent done.
IL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.199815e-02	ci left: 7.520101e-01	ci right 7.688379e-01	k: 7605	n:10000
KS ci ratio: 9.821929e-03	ci left: 9.362019e-01	ci right 9.455392e-01	k: 9410	n:10000
IL2   10000 perm   1 sec   (7183 perm/sec)   p_kst 9.410000e-01   p_cons 7.605000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IL2.4_478_10000_0.941_0.7605_1.png
                gene_name: IL2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
IGSF22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.468541e-02	ci left: 4.250540e-01	ci right 4.445840e-01	k: 4348	n:10000
Cons ci ratio: 6.380780e-02	ci left: 2.651762e-01	ci right 2.827556e-01	k: 2739	n:10000
KS ci ratio: 7.939167e-02	ci left: 1.881605e-01	ci right 2.038170e-01	k: 1959	n:10000
IGSF22   10000 perm   2 sec   (4916 perm/sec)   p_kst 1.959000e-01   p_cons 2.739000e-01   p_joint 4.348000e-01

Outputting figure to mutsig2_images.part000000000084/IGSF22.3_4069_10000_0.1959_0.2739_0.4348.png
                gene_name: IGSF22
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 54 percent done.
IKZF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.700260e-03	ci left: 9.682593e-01	ci right 9.748622e-01	k: 9717	n:10000
Cons ci ratio: 2.370020e-02	ci left: 7.235052e-01	ci right 7.409593e-01	k: 7323	n:10000
KS ci ratio: 1.430680e-02	ci left: 8.760270e-01	ci right 8.887493e-01	k: 8825	n:10000
IKZF1   10000 perm   2 sec   (5771 perm/sec)   p_kst 8.825000e-01   p_cons 7.323000e-01   p_joint 9.717000e-01

Outputting figure to mutsig2_images.part000000000084/IKZF1.3_1588_10000_0.8825_0.7323_0.9717.png
                gene_name: IKZF1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 56 percent done.
IKZF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.735752e-02	ci left: 8.286969e-01	ci right 8.433068e-01	k: 8361	n:10000
KS ci ratio: 1.236221e-02	ci left: 9.038097e-01	ci right 9.151504e-01	k: 9096	n:10000
IKZF3   10000 perm   2 sec   (5393 perm/sec)   p_kst 9.096000e-01   p_cons 8.361000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IKZF3.3_1562_10000_0.9096_0.8361_1.png
                gene_name: IKZF3
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
IL13RA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.071047e-02	ci left: 9.254425e-01	ci right 9.355050e-01	k: 9306	n:10000
Cons ci ratio: 3.065336e-02	ci left: 6.109050e-01	ci right 6.300247e-01	k: 6205	n:10000
KS ci ratio: 1.710368e-02	ci left: 8.327676e-01	ci right 8.472337e-01	k: 8401	n:10000
IL13RA2   10000 perm   2 sec   (5328 perm/sec)   p_kst 8.401000e-01   p_cons 6.205000e-01   p_joint 9.306000e-01

Outputting figure to mutsig2_images.part000000000084/IL13RA2.3_1179_10000_0.8401_0.6205_0.9306.png
                gene_name: IL13RA2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 59 percent done.
IL17RC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.299974e-02	ci left: 2.702248e-01	ci right 2.879041e-01	k: 2790	n:10000
Cons ci ratio: 7.291787e-02	ci left: 2.159584e-01	ci right 2.324025e-01	k: 2241	n:10000
KS ci ratio: 6.866427e-02	ci left: 2.372873e-01	ci right 2.542610e-01	k: 2457	n:10000
IL17RC   10000 perm   2 sec   (5276 perm/sec)   p_kst 2.457000e-01   p_cons 2.241000e-01   p_joint 2.790000e-01

Outputting figure to mutsig2_images.part000000000084/IL17RC.3_2452_10000_0.2457_0.2241_0.279.png
                gene_name: IL17RC
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 61 percent done.
IL1RL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.918611e-02	ci left: 1.546314e-01	ci right 1.691662e-01	k: 1618	n:10000
Cons ci ratio: 1.238882e-01	ci left: 8.533549e-02	ci right 9.670407e-02	k: 909	n:10000
KS ci ratio: 7.561906e-02	ci left: 2.037281e-01	ci right 2.198401e-01	k: 2117	n:10000
IL1RL1   10000 perm   2 sec   (5771 perm/sec)   p_kst 2.117000e-01   p_cons 9.090000e-02   p_joint 1.618000e-01

Joint ci ratio: 7.783271e-02	ci left: 1.081524e-01	ci right 1.169606e-01	k: 2250	n:20000
Cons ci ratio: 8.437829e-02	ci left: 9.327545e-02	ci right 1.015420e-01	k: 1947	n:20000
KS ci ratio: 5.396467e-02	ci left: 2.030856e-01	ci right 2.143992e-01	k: 4174	n:20000
IL1RL1   20000 perm   4 sec   (5346 perm/sec)   p_kst 2.087000e-01   p_cons 9.735000e-02   p_joint 1.125000e-01

Outputting figure to mutsig2_images.part000000000084/IL1RL1.3_1728_20000_0.2087_0.09735_0.1125.png
                gene_name: IL1RL1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 63 percent done.
IL1RN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.371172e-02	ci left: 2.657701e-01	ci right 2.833614e-01	k: 2745	n:10000
Cons ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
KS ci ratio: 3.613146e-02	ci left: 5.307719e-01	ci right 5.504044e-01	k: 5406	n:10000
IL1RN   10000 perm   2 sec   (6618 perm/sec)   p_kst 5.406000e-01   p_cons 2.820000e-02   p_joint 2.745000e-01

Joint ci ratio: 4.139717e-02	ci left: 3.030962e-01	ci right 3.159592e-01	k: 6190	n:20000
Cons ci ratio: 1.619766e-01	ci left: 2.614160e-02	ci right 3.079684e-02	k: 568	n:20000
KS ci ratio: 2.574918e-02	ci left: 5.298093e-01	ci right 5.436800e-01	k: 10735	n:20000
IL1RN   20000 perm   3 sec   (5874 perm/sec)   p_kst 5.367500e-01   p_cons 2.840000e-02   p_joint 3.095000e-01

Joint ci ratio: 3.674123e-02	ci left: 2.699858e-01	ci right 2.801245e-01	k: 8251	n:30000
Cons ci ratio: 1.340017e-01	ci left: 2.587211e-02	ci right 2.962009e-02	k: 831	n:30000
KS ci ratio: 2.110575e-02	ci left: 5.291693e-01	ci right 5.404906e-01	k: 16045	n:30000
IL1RN   30000 perm   5 sec   (5574 perm/sec)   p_kst 5.348333e-01   p_cons 2.770000e-02   p_joint 2.750333e-01

Joint ci ratio: 2.529411e-02	ci left: 3.704020e-01	ci right 3.799161e-01	k: 15006	n:40000
Cons ci ratio: 1.155858e-01	ci left: 2.633224e-02	ci right 2.958677e-02	k: 1117	n:40000
KS ci ratio: 1.828598e-02	ci left: 5.297220e-01	ci right 5.395230e-01	k: 21385	n:40000
IL1RN   40000 perm   7 sec   (5373 perm/sec)   p_kst 5.346250e-01   p_cons 2.792500e-02   p_joint 3.751500e-01

Joint ci ratio: 2.300266e-02	ci left: 3.631721e-01	ci right 3.716433e-01	k: 18370	n:50000
Cons ci ratio: 1.041720e-01	ci left: 2.610355e-02	ci right 2.899165e-02	k: 1376	n:50000
KS ci ratio: 1.637153e-02	ci left: 5.297557e-01	ci right 5.385203e-01	k: 26707	n:50000
IL1RN   50000 perm   10 sec   (5223 perm/sec)   p_kst 5.341400e-01   p_cons 2.752000e-02   p_joint 3.674000e-01

Joint ci ratio: 3.052784e-02	ci left: 2.122652e-01	ci right 2.188623e-01	k: 12933	n:60000
Cons ci ratio: 9.501887e-02	ci left: 2.627115e-02	ci right 2.890814e-02	k: 1654	n:60000
KS ci ratio: 1.491087e-02	ci left: 5.312826e-01	ci right 5.392807e-01	k: 32117	n:60000
IL1RN   60000 perm   12 sec   (5078 perm/sec)   p_kst 5.352833e-01   p_cons 2.756667e-02   p_joint 2.155500e-01

Outputting figure to mutsig2_images.part000000000084/IL1RN.3_631_60000_0.53528_0.027567_0.21555.png
                gene_name: IL1RN
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 65 percent done.
IL20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.819289e-02	ci left: 8.151724e-01	ci right 8.302391e-01	k: 8228	n:10000
Cons ci ratio: 1.635299e-02	ci left: 8.446839e-01	ci right 8.587105e-01	k: 8518	n:10000
KS ci ratio: 2.751516e-02	ci left: 6.605848e-01	ci right 6.791161e-01	k: 6699	n:10000
IL20   10000 perm   1 sec   (6680 perm/sec)   p_kst 6.699000e-01   p_cons 8.518000e-01   p_joint 8.228000e-01

Outputting figure to mutsig2_images.part000000000084/IL20.3_551_10000_0.6699_0.8518_0.8228.png
                gene_name: IL20
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 67 percent done.
IL23R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.262256e-02	ci left: 1.448193e-01	ci right 1.589842e-01	k: 1518	n:10000
Cons ci ratio: 3.881972e-02	ci left: 4.949504e-01	ci right 5.146468e-01	k: 5048	n:10000
KS ci ratio: 1.459254e-01	ci left: 6.236946e-02	ci right 7.228440e-02	k: 672	n:10000
IL23R   10000 perm   2 sec   (6027 perm/sec)   p_kst 6.720000e-02   p_cons 5.048000e-01   p_joint 1.518000e-01

Joint ci ratio: 5.987208e-02	ci left: 1.711892e-01	ci right 1.818050e-01	k: 3529	n:20000
Cons ci ratio: 2.654139e-02	ci left: 5.146993e-01	ci right 5.285945e-01	k: 10433	n:20000
KS ci ratio: 1.025756e-01	ci left: 6.454903e-02	ci right 7.157718e-02	k: 1360	n:20000
IL23R   20000 perm   4 sec   (5350 perm/sec)   p_kst 6.800000e-02   p_cons 5.216500e-01   p_joint 1.764500e-01

Joint ci ratio: 5.770017e-02	ci left: 1.294727e-01	ci right 1.371984e-01	k: 3999	n:30000
Cons ci ratio: 2.157541e-02	ci left: 5.181964e-01	ci right 5.295323e-01	k: 15716	n:30000
KS ci ratio: 8.376422e-02	ci left: 6.517655e-02	ci right 7.090745e-02	k: 2040	n:30000
IL23R   30000 perm   6 sec   (5095 perm/sec)   p_kst 6.800000e-02   p_cons 5.238667e-01   p_joint 1.333000e-01

Outputting figure to mutsig2_images.part000000000084/IL23R.3_1930_30000_0.068_0.52387_0.1333.png
                gene_name: IL23R
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 69 percent done.
IL26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.976194e-02	ci left: 6.247723e-01	ci right 6.437494e-01	k: 6343	n:10000
Cons ci ratio: 4.371700e-02	ci left: 4.358254e-01	ci right 4.554063e-01	k: 4456	n:10000
KS ci ratio: 6.192151e-02	ci left: 2.771565e-01	ci right 2.949683e-01	k: 2860	n:10000
IL26   10000 perm   2 sec   (6573 perm/sec)   p_kst 2.860000e-01   p_cons 4.456000e-01   p_joint 6.343000e-01

Outputting figure to mutsig2_images.part000000000084/IL26.3_536_10000_0.286_0.4456_0.6343.png
                gene_name: IL26
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 70 percent done.
IGJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.093700e-01	ci left: 1.335536e-02	ci right 1.833248e-02	k: 157	n:10000
Cons ci ratio: 3.093700e-01	ci left: 1.335536e-02	ci right 1.833248e-02	k: 157	n:10000
KS ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
IGJ   10000 perm   1 sec   (7087 perm/sec)   p_kst 1.292000e-01   p_cons 1.570000e-02   p_joint 1.570000e-02

Joint ci ratio: 1.240530e-01	ci left: 4.459306e-02	ci right 5.053936e-02	k: 950	n:20000
Cons ci ratio: 2.166821e-01	ci left: 1.435399e-02	ci right 1.788872e-02	k: 321	n:20000
KS ci ratio: 7.184833e-02	ci left: 1.248759e-01	ci right 1.342321e-01	k: 2590	n:20000
IGJ   20000 perm   3 sec   (6291 perm/sec)   p_kst 1.295000e-01   p_cons 1.605000e-02   p_joint 4.750000e-02

Joint ci ratio: 1.788124e-01	ci left: 1.435554e-02	ci right 1.720602e-02	k: 472	n:30000
Cons ci ratio: 1.788124e-01	ci left: 1.435554e-02	ci right 1.720602e-02	k: 472	n:30000
KS ci ratio: 5.884267e-02	ci left: 1.250618e-01	ci right 1.326769e-01	k: 3865	n:30000
IGJ   30000 perm   5 sec   (5988 perm/sec)   p_kst 1.288333e-01   p_cons 1.573333e-02   p_joint 1.573333e-02

Joint ci ratio: 8.890390e-02	ci left: 4.428569e-02	ci right 4.843049e-02	k: 1853	n:40000
Cons ci ratio: 1.553160e-01	ci left: 1.445643e-02	ci right 1.691461e-02	k: 626	n:40000
KS ci ratio: 5.137013e-02	ci left: 1.238010e-01	ci right 1.303532e-01	k: 5082	n:40000
IGJ   40000 perm   7 sec   (5771 perm/sec)   p_kst 1.270500e-01   p_cons 1.565000e-02   p_joint 4.632500e-02

Joint ci ratio: 1.395309e-01	ci left: 1.445474e-02	ci right 1.664203e-02	k: 776	n:50000
Cons ci ratio: 1.395309e-01	ci left: 1.445474e-02	ci right 1.664203e-02	k: 776	n:50000
KS ci ratio: 4.615833e-02	ci left: 1.231426e-01	ci right 1.289809e-01	k: 6302	n:50000
IGJ   50000 perm   9 sec   (5593 perm/sec)   p_kst 1.260400e-01   p_cons 1.552000e-02   p_joint 1.552000e-02

Joint ci ratio: 1.273323e-01	ci left: 1.455901e-02	ci right 1.655492e-02	k: 932	n:60000
Cons ci ratio: 1.273323e-01	ci left: 1.455901e-02	ci right 1.655492e-02	k: 932	n:60000
KS ci ratio: 4.219604e-02	ci left: 1.230903e-01	ci right 1.284127e-01	k: 7544	n:60000
IGJ   60000 perm   11 sec   (5448 perm/sec)   p_kst 1.257333e-01   p_cons 1.553333e-02   p_joint 1.553333e-02

Joint ci ratio: 5.093420e-02	ci left: 7.602377e-02	ci right 8.001129e-02	k: 5460	n:70000
Cons ci ratio: 1.161381e-01	ci left: 1.508344e-02	ci right 1.695699e-02	k: 1120	n:70000
KS ci ratio: 3.905963e-02	ci left: 1.233234e-01	ci right 1.282505e-01	k: 8804	n:70000
IGJ   70000 perm   13 sec   (5321 perm/sec)   p_kst 1.257714e-01   p_cons 1.600000e-02   p_joint 7.800000e-02

Joint ci ratio: 4.763279e-02	ci left: 7.618787e-02	ci right 7.991780e-02	k: 6243	n:80000
Cons ci ratio: 1.089464e-01	ci left: 1.505670e-02	ci right 1.680366e-02	k: 1273	n:80000
KS ci ratio: 3.657826e-02	ci left: 1.232365e-01	ci right 1.278407e-01	k: 10042	n:80000
IGJ   80000 perm   15 sec   (5209 perm/sec)   p_kst 1.255250e-01   p_cons 1.591250e-02   p_joint 7.803750e-02

Joint ci ratio: 4.498337e-02	ci left: 7.605811e-02	ci right 7.956916e-02	k: 7002	n:90000
Cons ci ratio: 1.025070e-01	ci left: 1.516866e-02	ci right 1.681831e-02	k: 1438	n:90000
KS ci ratio: 3.452893e-02	ci left: 1.230996e-01	ci right 1.274357e-01	k: 11273	n:90000
IGJ   90000 perm   18 sec   (5113 perm/sec)   p_kst 1.252556e-01   p_cons 1.597778e-02   p_joint 7.780000e-02

Joint ci ratio: 3.278047e-02	ci left: 1.230554e-01	ci right 1.271664e-01	k: 12510	n:100000
Cons ci ratio: 9.675249e-02	ci left: 1.536803e-02	ci right 1.694022e-02	k: 1614	n:100000
KS ci ratio: 3.278047e-02	ci left: 1.230554e-01	ci right 1.271664e-01	k: 12510	n:100000
IGJ   100000 perm   20 sec   (5020 perm/sec)   p_kst 1.251000e-01   p_cons 1.614000e-02   p_joint 1.251000e-01

Outputting figure to mutsig2_images.part000000000084/IGJ.2_496_100000_0.1251_0.01614_0.1251.png
                gene_name: IGJ
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 72 percent done.
IGSF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.007111e-02	ci left: 7.842146e-01	ci right 8.002148e-01	k: 7923	n:10000
Cons ci ratio: 8.307184e-03	ci left: 9.529432e-01	ci right 9.609878e-01	k: 9571	n:10000
KS ci ratio: 4.128764e-02	ci left: 4.641722e-01	ci right 4.838429e-01	k: 4740	n:10000
IGSF11   10000 perm   2 sec   (6415 perm/sec)   p_kst 4.740000e-01   p_cons 9.571000e-01   p_joint 7.923000e-01

Outputting figure to mutsig2_images.part000000000084/IGSF11.2_1377_10000_0.474_0.9571_0.7923.png
                gene_name: IGSF11
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 74 percent done.
IK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.555493e-02	ci left: 8.571254e-01	ci right 8.706618e-01	k: 8640	n:10000
Cons ci ratio: 4.223506e-02	ci left: 4.528895e-01	ci right 4.725322e-01	k: 4627	n:10000
KS ci ratio: 2.248092e-02	ci left: 7.439188e-01	ci right 7.609339e-01	k: 7525	n:10000
IK   10000 perm   2 sec   (6251 perm/sec)   p_kst 7.525000e-01   p_cons 4.627000e-01   p_joint 8.640000e-01

Outputting figure to mutsig2_images.part000000000084/IK.2_1754_10000_0.7525_0.4627_0.864.png
                gene_name: IK
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 76 percent done.
IKBIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.234863e-02	ci left: 2.743835e-01	ci right 2.921429e-01	k: 2832	n:10000
Cons ci ratio: 6.716099e-02	ci left: 2.454909e-01	ci right 2.626525e-01	k: 2540	n:10000
KS ci ratio: 2.848497e-02	ci left: 6.449852e-01	ci right 6.637248e-01	k: 6544	n:10000
IKBIP   10000 perm   2 sec   (6003 perm/sec)   p_kst 6.544000e-01   p_cons 2.540000e-01   p_joint 2.832000e-01

Outputting figure to mutsig2_images.part000000000084/IKBIP.2_1906_10000_0.6544_0.254_0.2832.png
                gene_name: IKBIP
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 78 percent done.
IKBKAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.189665e-02	ci left: 5.919262e-01	ci right 6.112146e-01	k: 6016	n:10000
Cons ci ratio: 3.566848e-02	ci left: 5.371811e-01	ci right 5.567915e-01	k: 5470	n:10000
KS ci ratio: 4.792091e-02	ci left: 3.911750e-01	ci right 4.104828e-01	k: 4008	n:10000
IKBKAP   10000 perm   2 sec   (5357 perm/sec)   p_kst 4.008000e-01   p_cons 5.470000e-01   p_joint 6.016000e-01

Outputting figure to mutsig2_images.part000000000084/IKBKAP.2_4143_10000_0.4008_0.547_0.6016.png
                gene_name: IKBKAP
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 80 percent done.
IL10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.342460e-02	ci left: 2.135905e-01	ci right 2.299719e-01	k: 2217	n:10000
Cons ci ratio: 2.414167e-02	ci left: 7.161338e-01	ci right 7.337350e-01	k: 7250	n:10000
KS ci ratio: 1.182535e-01	ci left: 9.311639e-02	ci right 1.049184e-01	k: 989	n:10000
IL10   10000 perm   2 sec   (6657 perm/sec)   p_kst 9.890000e-02   p_cons 7.250000e-01   p_joint 2.217000e-01

Joint ci ratio: 5.382621e-02	ci left: 2.039271e-01	ci right 2.152575e-01	k: 4191	n:20000
Cons ci ratio: 1.716525e-02	ci left: 7.165394e-01	ci right 7.289958e-01	k: 14456	n:20000
KS ci ratio: 8.378394e-02	ci left: 9.450185e-02	ci right 1.028153e-01	k: 1972	n:20000
IL10   20000 perm   3 sec   (5944 perm/sec)   p_kst 9.860000e-02   p_cons 7.228000e-01   p_joint 2.095500e-01

Outputting figure to mutsig2_images.part000000000084/IL10.2_557_20000_0.0986_0.7228_0.20955.png
                gene_name: IL10
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 81 percent done.
IL10RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.696151e-01	ci left: 4.638557e-02	ci right 5.507852e-02	k: 506	n:10000
Cons ci ratio: 2.206259e-01	ci left: 2.721699e-02	ci right 3.406005e-02	k: 305	n:10000
KS ci ratio: 2.956981e-02	ci left: 6.277880e-01	ci right 6.467320e-01	k: 6373	n:10000
IL10RA   10000 perm   2 sec   (6116 perm/sec)   p_kst 6.373000e-01   p_cons 3.050000e-02   p_joint 5.060000e-02

Joint ci ratio: 6.289135e-02	ci left: 1.575103e-01	ci right 1.677880e-01	k: 3252	n:20000
Cons ci ratio: 1.358782e-01	ci left: 3.722952e-02	ci right 4.270526e-02	k: 798	n:20000
KS ci ratio: 2.084217e-02	ci left: 6.320980e-01	ci right 6.454616e-01	k: 12776	n:20000
IL10RA   20000 perm   4 sec   (5202 perm/sec)   p_kst 6.388000e-01   p_cons 3.990000e-02   p_joint 1.626000e-01

Joint ci ratio: 4.167665e-02	ci left: 2.229646e-01	ci right 2.324882e-01	k: 6831	n:30000
Cons ci ratio: 1.102520e-01	ci left: 3.819990e-02	ci right 4.268966e-02	k: 1212	n:30000
KS ci ratio: 1.701782e-02	ci left: 6.333345e-01	ci right 6.442386e-01	k: 19164	n:30000
IL10RA   30000 perm   6 sec   (4924 perm/sec)   p_kst 6.388000e-01   p_cons 4.040000e-02   p_joint 2.277000e-01

Joint ci ratio: 5.021102e-02	ci left: 1.288950e-01	ci right 1.355585e-01	k: 5288	n:40000
Cons ci ratio: 9.611280e-02	ci left: 3.800290e-02	ci right 4.186425e-02	k: 1596	n:40000
KS ci ratio: 1.473478e-02	ci left: 6.341705e-01	ci right 6.436093e-01	k: 25556	n:40000
IL10RA   40000 perm   8 sec   (4816 perm/sec)   p_kst 6.389000e-01   p_cons 3.990000e-02   p_joint 1.322000e-01

Outputting figure to mutsig2_images.part000000000084/IL10RA.2_1765_40000_0.6389_0.0399_0.1322.png
                gene_name: IL10RA
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 83 percent done.
IL12B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.325932e-02	ci left: 7.308797e-01	ci right 7.481806e-01	k: 7396	n:10000
KS ci ratio: 4.070444e-02	ci left: 4.712639e-01	ci right 4.909471e-01	k: 4811	n:10000
IL12B   10000 perm   1 sec   (6766 perm/sec)   p_kst 4.811000e-01   p_cons 7.396000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IL12B.2_1011_10000_0.4811_0.7396_1.png
                gene_name: IL12B
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
IL12RB1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 87 percent done.
IL13RA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.997954e-03	ci left: 9.656240e-01	ci right 9.724991e-01	k: 9692	n:10000
Cons ci ratio: 3.705039e-02	ci left: 5.182587e-01	ci right 5.379249e-01	k: 5281	n:10000
KS ci ratio: 8.487256e-03	ci left: 9.510652e-01	ci right 9.592670e-01	k: 9553	n:10000
IL13RA1   10000 perm   2 sec   (6236 perm/sec)   p_kst 9.553000e-01   p_cons 5.281000e-01   p_joint 9.692000e-01

Outputting figure to mutsig2_images.part000000000084/IL13RA1.2_1328_10000_0.9553_0.5281_0.9692.png
                gene_name: IL13RA1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 89 percent done.
IL17A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.318302e-02	ci left: 5.727616e-01	ci right 5.921903e-01	k: 5825	n:10000
Cons ci ratio: 3.691682e-02	ci left: 5.200602e-01	ci right 5.397224e-01	k: 5299	n:10000
KS ci ratio: 3.499009e-02	ci left: 5.466977e-01	ci right 5.662694e-01	k: 5565	n:10000
IL17A   10000 perm   1 sec   (7212 perm/sec)   p_kst 5.565000e-01   p_cons 5.299000e-01   p_joint 5.825000e-01

Outputting figure to mutsig2_images.part000000000084/IL17A.2_480_10000_0.5565_0.5299_0.5825.png
                gene_name: IL17A
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 91 percent done.
IL18BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.558480e-02	ci left: 1.659274e-01	ci right 1.808634e-01	k: 1733	n:10000
Cons ci ratio: 3.079670e-02	ci left: 6.086951e-01	ci right 6.278360e-01	k: 6183	n:10000
KS ci ratio: 2.118569e-01	ci left: 2.958536e-02	ci right 3.669001e-02	k: 330	n:10000
IL18BP   10000 perm   1 sec   (6731 perm/sec)   p_kst 3.300000e-02   p_cons 6.183000e-01   p_joint 1.733000e-01

Joint ci ratio: 5.249014e-02	ci left: 2.122941e-01	ci right 2.237880e-01	k: 4360	n:20000
Cons ci ratio: 2.183997e-02	ci left: 6.101711e-01	ci right 6.236949e-01	k: 12339	n:20000
KS ci ratio: 1.492271e-01	ci left: 3.085647e-02	ci right 3.588039e-02	k: 666	n:20000
IL18BP   20000 perm   4 sec   (5651 perm/sec)   p_kst 3.330000e-02   p_cons 6.169500e-01   p_joint 2.180000e-01

Joint ci ratio: 5.411539e-02	ci left: 1.448232e-01	ci right 1.529116e-01	k: 4465	n:30000
Cons ci ratio: 1.876459e-02	ci left: 5.870145e-01	ci right 5.981675e-01	k: 17778	n:30000
KS ci ratio: 1.222558e-01	ci left: 3.110427e-02	ci right 3.518680e-02	k: 993	n:30000
IL18BP   30000 perm   6 sec   (5105 perm/sec)   p_kst 3.310000e-02   p_cons 5.926000e-01   p_joint 1.488333e-01

Joint ci ratio: 4.299596e-02	ci left: 1.683379e-01	ci right 1.757597e-01	k: 6881	n:40000
Cons ci ratio: 1.631731e-02	ci left: 5.857873e-01	ci right 5.954495e-01	k: 23625	n:40000
KS ci ratio: 1.068962e-01	ci left: 3.078376e-02	ci right 3.428453e-02	k: 1300	n:40000
IL18BP   40000 perm   8 sec   (4990 perm/sec)   p_kst 3.250000e-02   p_cons 5.906250e-01   p_joint 1.720250e-01

Joint ci ratio: 3.791110e-02	ci left: 1.728099e-01	ci right 1.795078e-01	k: 8807	n:50000
Cons ci ratio: 1.461360e-02	ci left: 5.856738e-01	ci right 5.943157e-01	k: 29500	n:50000
KS ci ratio: 9.657435e-02	ci left: 3.035735e-02	ci right 3.345731e-02	k: 1594	n:50000
IL18BP   50000 perm   10 sec   (4918 perm/sec)   p_kst 3.188000e-02   p_cons 5.900000e-01   p_joint 1.761400e-01

Outputting figure to mutsig2_images.part000000000084/IL18BP.2_640_50000_0.03188_0.59_0.17614.png
                gene_name: IL18BP
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 93 percent done.
IL1F5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.316462e-02	ci left: 8.926197e-01	ci right 9.045470e-01	k: 8987	n:10000
Cons ci ratio: 1.706549e-02	ci left: 8.333784e-01	ci right 8.478226e-01	k: 8407	n:10000
KS ci ratio: 2.007721e-02	ci left: 7.841132e-01	ci right 8.001162e-01	k: 7922	n:10000
IL1F5   10000 perm   1 sec   (6984 perm/sec)   p_kst 7.922000e-01   p_cons 8.407000e-01   p_joint 8.987000e-01

Outputting figure to mutsig2_images.part000000000084/IL1F5.2_484_10000_0.7922_0.8407_0.8987.png
                gene_name: IL1F5
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 94 percent done.
IL21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.387591e-02	ci left: 8.823723e-01	ci right 8.948003e-01	k: 8887	n:10000
KS ci ratio: 2.279465e-02	ci left: 7.386615e-01	ci right 7.557942e-01	k: 7473	n:10000
IL21   10000 perm   2 sec   (6627 perm/sec)   p_kst 7.473000e-01   p_cons 8.887000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000084/IL21.2_509_10000_0.7473_0.8887_1.png
                gene_name: IL21
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
IL22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.464460e-02	ci left: 7.077562e-01	ci right 7.255175e-01	k: 7167	n:10000
Cons ci ratio: 4.289489e-02	ci left: 4.452043e-01	ci right 4.648220e-01	k: 4550	n:10000
KS ci ratio: 5.066151e-02	ci left: 3.649021e-01	ci right 3.839711e-01	k: 3744	n:10000
IL22   10000 perm   2 sec   (6660 perm/sec)   p_kst 3.744000e-01   p_cons 4.550000e-01   p_joint 7.167000e-01

Outputting figure to mutsig2_images.part000000000084/IL22.2_560_10000_0.3744_0.455_0.7167.png
                gene_name: IL22
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 98 percent done.
IL24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.832371e-02	ci left: 8.130385e-01	ci right 8.281743e-01	k: 8207	n:10000
Cons ci ratio: 2.046673e-02	ci left: 7.776263e-01	ci right 7.938069e-01	k: 7858	n:10000
KS ci ratio: 3.942995e-02	ci left: 4.871524e-01	ci right 5.068493e-01	k: 4970	n:10000
IL24   10000 perm   1 sec   (7079 perm/sec)   p_kst 4.970000e-01   p_cons 7.858000e-01   p_joint 8.207000e-01

Outputting figure to mutsig2_images.part000000000084/IL24.2_648_10000_0.497_0.7858_0.8207.png
                gene_name: IL24
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000084
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 84 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1713>
Subject: Job 9893975: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1713>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000085> was used as the working directory.
Started at Sat Oct  6 00:13:36 2012
Results reported at Sat Oct  6 04:13:59 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000085.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000085.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 85  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000085.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  14616.02 sec.
    Max Memory :      4949 MB
    Max Swap   :      7380 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
85
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 85
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 85: processing genes 7574 - 7663
Calculating significance of each gene.
Using projection method.
7574	IL27RA	3.781990e-01
7575	IL28A	1
7576	IL28B	1
7577	IL28RA	3.376297e-01
7578	IL29	1
7579	IL2RA	5.087445e-01
7580	IL2RB	5.109666e-01
7581	IL2RG	1
7582	IL3	3.806274e-02
7583	IL31	2.154413e-01
7584	IL31RA	6.301267e-01
7585	IL32	4.928597e-02
7586	IL33	2.944208e-01
7587	IL34	6.510848e-01
7588	IL4	1.058810e-01
7589	IL4I1	8.034656e-01
7590	IL4R	9.717103e-01
7591	IL5	1
7592	IL5RA	3.410625e-01
7593	IL6	2.355961e-01
7594	IL6R	4.843604e-01
7595	IL6ST	5.881241e-01
7596	IL7	2.675974e-01
7597	IL7R	2.942457e-01
7598	IL8	3.845748e-01
7599	IL9	1.508935e-01
7600	ILDR1	9.859837e-02
7601	ILDR2	6.066053e-01
7602	ILF2	1
7603	ILF3	7.292965e-01
7604	ILK	1
7605	ILKAP	6.354884e-01
7606	ILVBL	8.996118e-01
7607	IMMP1L	3.596071e-01
7608	IMMP2L	1.730516e-02
7609	IMMT	4.371529e-01
7610	IMP3	2.745554e-01
7611	IMP4	2.711455e-01
7612	IMP5	5.910764e-01
7613	IMPA1	2.071066e-01
7614	IMPA2	3.064118e-01
7615	IMPACT	4.965290e-01
7616	IMPAD1	8.505942e-01
7617	IMPDH1	6.324396e-01
7618	IMPDH2	5.370586e-01
7619	IMPG1	2.434630e-01
7620	IMPG2	4.470618e-01
7621	INA	5.008309e-01
7622	INADL	8.943325e-01
7623	INCA1	1
7624	INCENP	9.948574e-01
7625	INF2	7.787147e-01
7626	ING1	3.873351e-02
7627	ING2	7.502889e-01
7628	ING3	5.311977e-01
7629	ING4	2.059551e-01
7630	ING5	1.186708e-01
7631	INHA	5.277209e-01
7632	INHBA	1.052678e-03
7633	INHBB	8.924818e-01
7634	INHBC	4.507602e-01
7635	INHBE	7.428677e-01
7636	INMT	4.144960e-01
7637	INO80	5.143227e-01
7638	INO80B	7.853457e-01
7639	INO80C	1
7640	INO80D	9.394531e-01
7641	INO80E	1.236506e-01
7642	INPP1	3.630894e-01
7643	INPP4A	9.325309e-01
7644	INPP4B	6.451397e-01
7645	INPP5A	4.752764e-01
7646	INPP5B	9.803295e-01
7647	INPP5D	7.870135e-01
7648	INPP5E	1
7649	INPP5F	4.653729e-01
7650	INPP5J	8.748630e-01
7651	INPP5K	1.628640e-01
7652	INPPL1	7.809573e-01
7653	INS	1
7654	INS-IGF2	1
7655	INSC	4.915478e-01
7656	INSIG1	5.568518e-01
7657	INSIG2	4.466487e-01
7658	INSL3	1
7659	INSL4	1
7660	INSL5	1
7661	INSL6	3.799231e-03
7662	INSM1	1
7663	INSM2	9.821593e-01
Done

Running MutSig 2:
Scatter job 85: processing genes 7574 - 7663
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
INHBA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.334730e-01	ci left: 7.407714e-02	ci right 8.476939e-02	k: 793	n:10000
Cons ci ratio: 2.497861e-02	ci left: 7.022067e-01	ci right 7.200701e-01	k: 7112	n:10000
KS ci ratio: 1.624806e-01	ci left: 5.051566e-02	ci right 5.954576e-02	k: 549	n:10000
INHBA   10000 perm   2 sec   (4885 perm/sec)   p_kst 5.490000e-02   p_cons 7.112000e-01   p_joint 7.930000e-02

Joint ci ratio: 9.070869e-02	ci left: 8.151323e-02	ci right 8.930779e-02	k: 1707	n:20000
Cons ci ratio: 1.765436e-02	ci left: 7.050649e-01	ci right 7.176736e-01	k: 14228	n:20000
KS ci ratio: 1.177528e-01	ci left: 4.940061e-02	ci right 5.563030e-02	k: 1049	n:20000
INHBA   20000 perm   9 sec   (2339 perm/sec)   p_kst 5.245000e-02   p_cons 7.114000e-01   p_joint 8.535000e-02

Joint ci ratio: 6.650031e-02	ci left: 1.003376e-01	ci right 1.072726e-01	k: 3113	n:30000
Cons ci ratio: 1.440899e-02	ci left: 7.064032e-01	ci right 7.166891e-01	k: 21347	n:30000
KS ci ratio: 9.702640e-02	ci left: 4.909101e-02	ci right 5.412960e-02	k: 1547	n:30000
INHBA   30000 perm   11 sec   (2722 perm/sec)   p_kst 5.156667e-02   p_cons 7.115667e-01   p_joint 1.037667e-01

Outputting figure to mutsig2_images.part000000000085/INHBA.10_1289_30000_0.051567_0.71157_0.10377.png
                gene_name: INHBA
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 2 percent done.
INO80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.764659e-02	ci left: 1.951537e-01	ci right 2.110196e-01	k: 2030	n:10000
Cons ci ratio: 8.670614e-02	ci left: 1.622916e-01	ci right 1.771013e-01	k: 1696	n:10000
KS ci ratio: 1.087943e-01	ci left: 1.086148e-01	ci right 1.212105e-01	k: 1148	n:10000
INO80   10000 perm   2 sec   (4249 perm/sec)   p_kst 1.148000e-01   p_cons 1.696000e-01   p_joint 2.030000e-01

Joint ci ratio: 8.303886e-02	ci left: 9.607192e-02	ci right 1.044447e-01	k: 2004	n:20000
Cons ci ratio: 6.419219e-02	ci left: 1.520819e-01	ci right 1.622180e-01	k: 3142	n:20000
KS ci ratio: 7.655473e-02	ci left: 1.114456e-01	ci right 1.203665e-01	k: 2317	n:20000
INO80   20000 perm   5 sec   (3891 perm/sec)   p_kst 1.158500e-01   p_cons 1.571000e-01   p_joint 1.002000e-01

Outputting figure to mutsig2_images.part000000000085/INO80.9_4811_20000_0.11585_0.1571_0.1002.png
                gene_name: INO80
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 4 percent done.
INPP5F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.035655e-01	ci left: 1.390981e-02	ci right 1.897755e-02	k: 163	n:10000
Cons ci ratio: 1.781042e-01	ci left: 4.207265e-02	ci right 5.039427e-02	k: 461	n:10000
KS ci ratio: 2.601440e-01	ci left: 1.930852e-02	ci right 2.517438e-02	k: 221	n:10000
INPP5F   10000 perm   2 sec   (4339 perm/sec)   p_kst 2.210000e-02   p_cons 4.610000e-02   p_joint 1.630000e-02

Joint ci ratio: 1.808539e-01	ci left: 2.087148e-02	ci right 2.506879e-02	k: 458	n:20000
Cons ci ratio: 1.255857e-01	ci left: 4.352588e-02	ci right 4.940689e-02	k: 928	n:20000
KS ci ratio: 1.750839e-01	ci left: 2.230608e-02	ci right 2.663369e-02	k: 488	n:20000
INPP5F   20000 perm   5 sec   (4089 perm/sec)   p_kst 2.440000e-02   p_cons 4.640000e-02   p_joint 2.290000e-02

Joint ci ratio: 1.389777e-01	ci left: 2.403537e-02	ci right 2.765724e-02	k: 774	n:30000
Cons ci ratio: 1.029875e-01	ci left: 4.368940e-02	ci right 4.846567e-02	k: 1381	n:30000
KS ci ratio: 1.416262e-01	ci left: 2.313404e-02	ci right 2.669212e-02	k: 746	n:30000
INPP5F   30000 perm   8 sec   (3989 perm/sec)   p_kst 2.486667e-02   p_cons 4.603333e-02   p_joint 2.580000e-02

Joint ci ratio: 1.442580e-01	ci left: 1.681613e-02	ci right 1.945449e-02	k: 724	n:40000
Cons ci ratio: 9.068782e-02	ci left: 4.259770e-02	ci right 4.666873e-02	k: 1784	n:40000
KS ci ratio: 1.180529e-01	ci left: 2.523927e-02	ci right 2.842992e-02	k: 1072	n:40000
INPP5F   40000 perm   10 sec   (3913 perm/sec)   p_kst 2.680000e-02   p_cons 4.460000e-02   p_joint 1.810000e-02

Joint ci ratio: 1.051178e-01	ci left: 2.563579e-02	ci right 2.849947e-02	k: 1352	n:50000
Cons ci ratio: 8.210577e-02	ci left: 4.180705e-02	ci right 4.540618e-02	k: 2179	n:50000
KS ci ratio: 1.061298e-01	ci left: 2.514866e-02	ci right 2.798666e-02	k: 1327	n:50000
INPP5F   50000 perm   13 sec   (3840 perm/sec)   p_kst 2.654000e-02   p_cons 4.358000e-02   p_joint 2.704000e-02

Joint ci ratio: 1.046122e-01	ci left: 2.166916e-02	ci right 2.407730e-02	k: 1371	n:60000
Cons ci ratio: 7.498205e-02	ci left: 4.193074e-02	ci right 4.521360e-02	k: 2613	n:60000
KS ci ratio: 9.652890e-02	ci left: 2.545726e-02	ci right 2.805545e-02	k: 1604	n:60000
INPP5F   60000 perm   16 sec   (3678 perm/sec)   p_kst 2.673333e-02   p_cons 4.355000e-02   p_joint 2.285000e-02

Joint ci ratio: 8.547253e-02	ci left: 2.792318e-02	ci right 3.043034e-02	k: 2041	n:70000
Cons ci ratio: 6.917919e-02	ci left: 4.233790e-02	ci right 4.538577e-02	k: 3069	n:70000
KS ci ratio: 8.952828e-02	ci left: 2.546241e-02	ci right 2.786276e-02	k: 1865	n:70000
INPP5F   70000 perm   19 sec   (3607 perm/sec)   p_kst 2.664286e-02   p_cons 4.384286e-02   p_joint 2.915714e-02

Outputting figure to mutsig2_images.part000000000085/INPP5F.9_3479_70000_0.026643_0.043843_0.029157.png
                gene_name: INPP5F
               theta_stop: 0.090 
                    nperm: 70000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 5 percent done.
IMPG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.483936e-02	ci left: 8.680521e-01	ci right 8.811288e-01	k: 8747	n:10000
Cons ci ratio: 1.513557e-02	ci left: 8.635571e-01	ci right 8.768264e-01	k: 8703	n:10000
KS ci ratio: 1.894940e-02	ci left: 8.027803e-01	ci right 8.182384e-01	k: 8106	n:10000
IMPG2   10000 perm   2 sec   (4194 perm/sec)   p_kst 8.106000e-01   p_cons 8.703000e-01   p_joint 8.747000e-01

Outputting figure to mutsig2_images.part000000000085/IMPG2.8_3802_10000_0.8106_0.8703_0.8747.png
                gene_name: IMPG2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 7 percent done.
ILDR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.278220e-02	ci left: 5.786800e-01	ci right 5.980685e-01	k: 5884	n:10000
Cons ci ratio: 1.870845e-02	ci left: 8.067404e-01	ci right 8.220760e-01	k: 8145	n:10000
KS ci ratio: 4.131249e-02	ci left: 4.638726e-01	ci right 4.835427e-01	k: 4737	n:10000
ILDR1   10000 perm   2 sec   (5336 perm/sec)   p_kst 4.737000e-01   p_cons 8.145000e-01   p_joint 5.884000e-01

Outputting figure to mutsig2_images.part000000000085/ILDR1.7_1537_10000_0.4737_0.8145_0.5884.png
                gene_name: ILDR1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 9 percent done.
IMMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.420760e-02	ci left: 1.705475e-01	ci right 1.856405e-01	k: 1780	n:10000
Cons ci ratio: 1.203560e-01	ci left: 9.009981e-02	ci right 1.017368e-01	k: 958	n:10000
KS ci ratio: 8.170639e-02	ci left: 1.793999e-01	ci right 1.947829e-01	k: 1870	n:10000
IMMT   10000 perm   2 sec   (5378 perm/sec)   p_kst 1.870000e-01   p_cons 9.580000e-02   p_joint 1.780000e-01

Joint ci ratio: 7.430647e-02	ci left: 1.175927e-01	ci right 1.267175e-01	k: 2442	n:20000
Cons ci ratio: 8.560077e-02	ci left: 9.082330e-02	ci right 9.899491e-02	k: 1897	n:20000
KS ci ratio: 5.885224e-02	ci left: 1.761799e-01	ci right 1.869129e-01	k: 3630	n:20000
IMMT   20000 perm   4 sec   (4684 perm/sec)   p_kst 1.815000e-01   p_cons 9.485000e-02   p_joint 1.221000e-01

Outputting figure to mutsig2_images.part000000000085/IMMT.7_2337_20000_0.1815_0.09485_0.1221.png
                gene_name: IMMT
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 11 percent done.
IMPG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.061291e-01	ci left: 3.129396e-02	ci right 3.858023e-02	k: 348	n:10000
Cons ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
KS ci ratio: 3.764171e-02	ci left: 5.103535e-01	ci right 5.300347e-01	k: 5202	n:10000
IMPG1   10000 perm   2 sec   (5316 perm/sec)   p_kst 5.202000e-01   p_cons 1.600000e-03   p_joint 3.480000e-02

Joint ci ratio: 1.989008e-01	ci left: 1.715307e-02	ci right 2.098856e-02	k: 380	n:20000
Cons ci ratio: 6.270744e-01	ci left: 1.344893e-03	ci right 2.606975e-03	k: 38	n:20000
KS ci ratio: 2.745447e-02	ci left: 4.977955e-01	ci right 5.117031e-01	k: 10095	n:20000
IMPG1   20000 perm   4 sec   (4760 perm/sec)   p_kst 5.047500e-01   p_cons 1.900000e-03   p_joint 1.900000e-02

Joint ci ratio: 1.890189e-01	ci left: 1.279637e-02	ci right 1.549893e-02	k: 423	n:30000
Cons ci ratio: 5.233342e-01	ci left: 1.381407e-03	ci right 2.385675e-03	k: 55	n:30000
KS ci ratio: 2.158983e-02	ci left: 5.178630e-01	ci right 5.291991e-01	k: 15706	n:30000
IMPG1   30000 perm   7 sec   (4532 perm/sec)   p_kst 5.235333e-01   p_cons 1.833333e-03   p_joint 1.410000e-02

Joint ci ratio: 1.847870e-01	ci left: 1.009638e-02	ci right 1.217550e-02	k: 444	n:40000
Cons ci ratio: 4.405932e-01	ci left: 1.541690e-03	ci right 2.433099e-03	k: 78	n:40000
KS ci ratio: 1.880873e-02	ci left: 5.156654e-01	ci right 5.254816e-01	k: 20823	n:40000
IMPG1   40000 perm   9 sec   (4389 perm/sec)   p_kst 5.205750e-01   p_cons 1.950000e-03   p_joint 1.110000e-02

Joint ci ratio: 1.218467e-01	ci left: 1.904299e-02	ci right 2.153314e-02	k: 1013	n:50000
Cons ci ratio: 3.716530e-01	ci left: 1.808469e-03	ci right 2.650996e-03	k: 110	n:50000
KS ci ratio: 1.697188e-02	ci left: 5.117888e-01	ci right 5.205693e-01	k: 25809	n:50000
IMPG1   50000 perm   12 sec   (4283 perm/sec)   p_kst 5.161800e-01   p_cons 2.200000e-03   p_joint 2.026000e-02

Joint ci ratio: 1.336576e-01	ci left: 1.318794e-02	ci right 1.509282e-02	k: 847	n:60000
Cons ci ratio: 3.447627e-01	ci left: 1.780089e-03	ci right 2.536029e-03	k: 128	n:60000
KS ci ratio: 1.548174e-02	ci left: 5.125424e-01	ci right 5.205560e-01	k: 30993	n:60000
IMPG1   60000 perm   14 sec   (4191 perm/sec)   p_kst 5.165500e-01   p_cons 2.133333e-03   p_joint 1.411667e-02

Joint ci ratio: 1.070370e-01	ci left: 1.779279e-02	ci right 1.981880e-02	k: 1315	n:70000
Cons ci ratio: 3.105207e-01	ci left: 1.919226e-03	ci right 2.637316e-03	k: 158	n:70000
KS ci ratio: 1.432126e-02	ci left: 5.132618e-01	ci right 5.206797e-01	k: 36188	n:70000
IMPG1   70000 perm   17 sec   (4110 perm/sec)   p_kst 5.169714e-01   p_cons 2.257143e-03   p_joint 1.878571e-02

Joint ci ratio: 9.431321e-02	ci left: 2.013967e-02	ci right 2.214526e-02	k: 1690	n:80000
Cons ci ratio: 2.886519e-01	ci left: 1.968372e-03	ci right 2.643533e-03	k: 183	n:80000
KS ci ratio: 1.340262e-02	ci left: 5.132679e-01	ci right 5.202059e-01	k: 41339	n:80000
IMPG1   80000 perm   20 sec   (4035 perm/sec)   p_kst 5.167375e-01   p_cons 2.287500e-03   p_joint 2.112500e-02

Joint ci ratio: 1.045180e-01	ci left: 1.458396e-02	ci right 1.620305e-02	k: 1384	n:90000
Cons ci ratio: 2.951904e-01	ci left: 1.667243e-03	ci right 2.254491e-03	k: 175	n:90000
KS ci ratio: 1.261995e-02	ci left: 5.141071e-01	ci right 5.206474e-01	k: 46564	n:90000
IMPG1   90000 perm   23 sec   (3953 perm/sec)   p_kst 5.173778e-01   p_cons 1.944444e-03   p_joint 1.537778e-02

Joint ci ratio: 8.263065e-02	ci left: 2.109975e-02	ci right 2.292812e-02	k: 2200	n:100000
Cons ci ratio: 2.728365e-01	ci left: 1.779196e-03	ci right 2.350303e-03	k: 205	n:100000
KS ci ratio: 1.206300e-02	ci left: 5.105068e-01	ci right 5.167124e-01	k: 51361	n:100000
IMPG1   100000 perm   26 sec   (3889 perm/sec)   p_kst 5.136100e-01   p_cons 2.050000e-03   p_joint 2.200000e-02

Joint ci ratio: 9.981505e-02	ci left: 1.313663e-02	ci right 1.452555e-02	k: 1520	n:110000
Cons ci ratio: 2.689659e-01	ci left: 1.668279e-03	ci right 2.194901e-03	k: 211	n:110000
KS ci ratio: 1.112432e-02	ci left: 5.272999e-01	ci right 5.332076e-01	k: 58328	n:110000
IMPG1   110000 perm   29 sec   (3820 perm/sec)   p_kst 5.302545e-01   p_cons 1.918182e-03   p_joint 1.381818e-02

Joint ci ratio: 1.016830e-01	ci left: 1.161090e-02	ci right 1.286284e-02	k: 1467	n:120000
Cons ci ratio: 2.599323e-01	ci left: 1.645968e-03	ci right 2.145263e-03	k: 226	n:120000
KS ci ratio: 1.065386e-02	ci left: 5.272796e-01	ci right 5.329356e-01	k: 63613	n:120000
IMPG1   120000 perm   32 sec   (3766 perm/sec)   p_kst 5.301083e-01   p_cons 1.883333e-03   p_joint 1.222500e-02

Joint ci ratio: 9.932969e-02	ci left: 1.125007e-02	ci right 1.243339e-02	k: 1538	n:130000
Cons ci ratio: 2.538622e-01	ci left: 1.598518e-03	ci right 2.070302e-03	k: 237	n:130000
KS ci ratio: 1.024936e-02	ci left: 5.267361e-01	ci right 5.321703e-01	k: 68829	n:130000
IMPG1   130000 perm   35 sec   (3708 perm/sec)   p_kst 5.294538e-01   p_cons 1.823077e-03   p_joint 1.183077e-02

Joint ci ratio: 1.035336e-01	ci left: 9.610662e-03	ci right 1.066692e-02	k: 1418	n:140000
Cons ci ratio: 2.472054e-01	ci left: 1.571363e-03	ci right 2.021103e-03	k: 250	n:140000
KS ci ratio: 9.889508e-03	ci left: 5.261811e-01	ci right 5.314177e-01	k: 74032	n:140000
IMPG1   140000 perm   38 sec   (3638 perm/sec)   p_kst 5.288000e-01   p_cons 1.785714e-03   p_joint 1.012857e-02

Joint ci ratio: 1.000348e-01	ci left: 9.626149e-03	ci right 1.064625e-02	k: 1519	n:150000
Cons ci ratio: 2.387914e-01	ci left: 1.579301e-03	ci right 2.013653e-03	k: 268	n:150000
KS ci ratio: 9.557502e-03	ci left: 5.260966e-01	ci right 5.311556e-01	k: 79294	n:150000
IMPG1   150000 perm   42 sec   (3588 perm/sec)   p_kst 5.286267e-01   p_cons 1.786667e-03   p_joint 1.012667e-02

Joint ci ratio: 9.924611e-02	ci left: 9.176765e-03	ci right 1.014113e-02	k: 1544	n:160000
Cons ci ratio: 2.324019e-01	ci left: 1.568811e-03	ci right 1.987074e-03	k: 283	n:160000
KS ci ratio: 9.258691e-03	ci left: 5.259254e-01	ci right 5.308236e-01	k: 84540	n:160000
IMPG1   160000 perm   45 sec   (3530 perm/sec)   p_kst 5.283750e-01   p_cons 1.768750e-03   p_joint 9.650000e-03

Joint ci ratio: 8.720268e-02	ci left: 1.123452e-02	ci right 1.226458e-02	k: 1996	n:170000
Cons ci ratio: 2.261209e-01	ci left: 1.565241e-03	ci right 1.969701e-03	k: 299	n:170000
KS ci ratio: 8.981698e-03	ci left: 5.260295e-01	ci right 5.307813e-01	k: 89829	n:170000
IMPG1   170000 perm   49 sec   (3484 perm/sec)   p_kst 5.284059e-01   p_cons 1.758824e-03   p_joint 1.174118e-02

Joint ci ratio: 8.623270e-02	ci left: 1.086030e-02	ci right 1.184442e-02	k: 2042	n:180000
Cons ci ratio: 2.185973e-01	ci left: 1.588455e-03	ci right 1.983423e-03	k: 320	n:180000
KS ci ratio: 8.726608e-03	ci left: 5.262129e-01	ci right 5.308306e-01	k: 95134	n:180000
IMPG1   180000 perm   52 sec   (3439 perm/sec)   p_kst 5.285222e-01   p_cons 1.777778e-03   p_joint 1.134444e-02

Joint ci ratio: 8.647295e-02	ci left: 1.023707e-02	ci right 1.116742e-02	k: 2032	n:190000
Cons ci ratio: 2.111603e-01	ci left: 1.619395e-03	ci right 2.006585e-03	k: 343	n:190000
KS ci ratio: 8.492445e-03	ci left: 5.263577e-01	ci right 5.308520e-01	k: 100435	n:190000
IMPG1   190000 perm   56 sec   (3395 perm/sec)   p_kst 5.286053e-01   p_cons 1.805263e-03   p_joint 1.069474e-02

Joint ci ratio: 9.169603e-02	ci left: 8.639594e-03	ci right 9.474729e-03	k: 1810	n:200000
Cons ci ratio: 2.058436e-01	ci left: 1.623727e-03	ci right 2.000948e-03	k: 361	n:200000
KS ci ratio: 8.274761e-03	ci left: 5.265744e-01	ci right 5.309547e-01	k: 105753	n:200000
IMPG1   200000 perm   60 sec   (3352 perm/sec)   p_kst 5.287650e-01   p_cons 1.805000e-03   p_joint 9.050000e-03

Joint ci ratio: 8.990580e-02	ci left: 8.567896e-03	ci right 9.379079e-03	k: 1883	n:210000
Cons ci ratio: 2.001194e-01	ci left: 1.641326e-03	ci right 2.010738e-03	k: 382	n:210000
KS ci ratio: 8.073850e-03	ci left: 5.267194e-01	ci right 5.309940e-01	k: 111060	n:210000
IMPG1   210000 perm   63 sec   (3310 perm/sec)   p_kst 5.288571e-01   p_cons 1.819048e-03   p_joint 8.966667e-03

Joint ci ratio: 8.867474e-02	ci left: 8.413945e-03	ci right 9.199079e-03	k: 1936	n:220000
Cons ci ratio: 1.958213e-01	ci left: 1.640163e-03	ci right 2.000439e-03	k: 399	n:220000
KS ci ratio: 7.884019e-03	ci left: 5.270343e-01	ci right 5.312104e-01	k: 116407	n:220000
IMPG1   220000 perm   67 sec   (3269 perm/sec)   p_kst 5.291227e-01   p_cons 1.813636e-03   p_joint 8.800000e-03

Joint ci ratio: 8.825638e-02	ci left: 8.128850e-03	ci right 8.883615e-03	k: 1955	n:230000
Cons ci ratio: 1.906471e-01	ci left: 1.659878e-03	ci right 2.013735e-03	k: 421	n:230000
KS ci ratio: 7.712220e-03	ci left: 5.269836e-01	ci right 5.310678e-01	k: 121676	n:230000
IMPG1   230000 perm   71 sec   (3229 perm/sec)   p_kst 5.290261e-01   p_cons 1.830435e-03   p_joint 8.500000e-03

Joint ci ratio: 7.993564e-02	ci left: 9.524085e-03	ci right 1.032115e-02	k: 2380	n:240000
Cons ci ratio: 1.875630e-01	ci left: 1.646288e-03	ci right 1.990922e-03	k: 435	n:240000
KS ci ratio: 7.555036e-03	ci left: 5.266838e-01	ci right 5.306821e-01	k: 126884	n:240000
IMPG1   240000 perm   75 sec   (3185 perm/sec)   p_kst 5.286833e-01   p_cons 1.812500e-03   p_joint 9.916667e-03

Joint ci ratio: 7.269944e-02	ci left: 1.107787e-02	ci right 1.191751e-02	k: 2873	n:250000
Cons ci ratio: 1.822059e-01	ci left: 1.679626e-03	ci right 2.020089e-03	k: 461	n:250000
KS ci ratio: 7.399652e-03	ci left: 5.269090e-01	ci right 5.308264e-01	k: 132217	n:250000
IMPG1   250000 perm   80 sec   (3142 perm/sec)   p_kst 5.288680e-01   p_cons 1.844000e-03   p_joint 1.149200e-02

Joint ci ratio: 5.777133e-02	ci left: 1.689707e-02	ci right 1.790604e-02	k: 4523	n:260000
Cons ci ratio: 1.789440e-01	ci left: 1.677454e-03	ci right 2.010731e-03	k: 478	n:260000
KS ci ratio: 7.311908e-03	ci left: 5.231168e-01	ci right 5.269596e-01	k: 136510	n:260000
IMPG1   260000 perm   84 sec   (3104 perm/sec)   p_kst 5.250385e-01   p_cons 1.838462e-03   p_joint 1.739615e-02

Joint ci ratio: 5.594465e-02	ci left: 1.735938e-02	ci right 1.836212e-02	k: 4821	n:270000
Cons ci ratio: 1.753207e-01	ci left: 1.686117e-03	ci right 2.013613e-03	k: 498	n:270000
KS ci ratio: 7.177911e-03	ci left: 5.229661e-01	ci right 5.267371e-01	k: 141710	n:270000
IMPG1   270000 perm   88 sec   (3062 perm/sec)   p_kst 5.248519e-01   p_cons 1.844444e-03   p_joint 1.785556e-02

Joint ci ratio: 5.728245e-02	ci left: 1.597856e-02	ci right 1.692434e-02	k: 4605	n:280000
Cons ci ratio: 1.724090e-01	ci left: 1.683971e-03	ci right 2.005052e-03	k: 515	n:280000
KS ci ratio: 7.047284e-03	ci left: 5.230911e-01	ci right 5.267941e-01	k: 146984	n:280000
IMPG1   280000 perm   93 sec   (3022 perm/sec)   p_kst 5.249429e-01   p_cons 1.839286e-03   p_joint 1.644643e-02

Joint ci ratio: 5.669535e-02	ci left: 1.575724e-02	ci right 1.668005e-02	k: 4702	n:290000
Cons ci ratio: 1.693197e-01	ci left: 1.688618e-03	ci right 2.004229e-03	k: 534	n:290000
KS ci ratio: 6.927177e-03	ci left: 5.229460e-01	ci right 5.265845e-01	k: 152182	n:290000
IMPG1   290000 perm   97 sec   (2989 perm/sec)   p_kst 5.247655e-01   p_cons 1.841379e-03   p_joint 1.621379e-02

Joint ci ratio: 5.606052e-02	ci left: 1.558689e-02	ci right 1.648916e-02	k: 4810	n:300000
Cons ci ratio: 1.659412e-01	ci left: 1.702589e-03	ci right 2.013827e-03	k: 556	n:300000
KS ci ratio: 6.810686e-03	ci left: 5.229811e-01	ci right 5.265584e-01	k: 157431	n:300000
IMPG1   300000 perm   102 sec   (2953 perm/sec)   p_kst 5.247700e-01   p_cons 1.853333e-03   p_joint 1.603333e-02

Joint ci ratio: 5.646396e-02	ci left: 1.487720e-02	ci right 1.574480e-02	k: 4745	n:310000
Cons ci ratio: 1.640394e-01	ci left: 1.687870e-03	ci right 1.992531e-03	k: 569	n:310000
KS ci ratio: 6.697107e-03	ci left: 5.232209e-01	ci right 5.267399e-01	k: 162744	n:310000
IMPG1   310000 perm   106 sec   (2920 perm/sec)   p_kst 5.249806e-01   p_cons 1.835484e-03   p_joint 1.530645e-02

Joint ci ratio: 5.686815e-02	ci left: 1.421499e-02	ci right 1.505009e-02	k: 4681	n:320000
Cons ci ratio: 1.617851e-01	ci left: 1.683085e-03	ci right 1.982302e-03	k: 585	n:320000
KS ci ratio: 6.589356e-03	ci left: 5.234212e-01	ci right 5.268846e-01	k: 168049	n:320000
IMPG1   320000 perm   111 sec   (2885 perm/sec)   p_kst 5.251531e-01   p_cons 1.828125e-03   p_joint 1.462813e-02

Joint ci ratio: 5.377316e-02	ci left: 1.542213e-02	ci right 1.627731e-02	k: 5229	n:330000
Cons ci ratio: 1.593563e-01	ci left: 1.684436e-03	ci right 1.978968e-03	k: 603	n:330000
KS ci ratio: 6.486603e-03	ci left: 5.236127e-01	ci right 5.270232e-01	k: 173355	n:330000
IMPG1   330000 perm   116 sec   (2849 perm/sec)   p_kst 5.253182e-01   p_cons 1.827273e-03   p_joint 1.584545e-02

Joint ci ratio: 5.400127e-02	ci left: 1.484946e-02	ci right 1.567648e-02	k: 5188	n:340000
Cons ci ratio: 1.576698e-01	ci left: 1.671612e-03	ci right 1.960515e-03	k: 616	n:340000
KS ci ratio: 6.390395e-03	ci left: 5.236463e-01	ci right 5.270062e-01	k: 178611	n:340000
IMPG1   340000 perm   121 sec   (2819 perm/sec)   p_kst 5.253265e-01   p_cons 1.811765e-03   p_joint 1.525882e-02

Joint ci ratio: 5.390262e-02	ci left: 1.448430e-02	ci right 1.528947e-02	k: 5209	n:350000
Cons ci ratio: 1.552966e-01	ci left: 1.676012e-03	ci right 1.960909e-03	k: 635	n:350000
KS ci ratio: 6.299174e-03	ci left: 5.236126e-01	ci right 5.269241e-01	k: 183844	n:350000
IMPG1   350000 perm   125 sec   (2791 perm/sec)   p_kst 5.252686e-01   p_cons 1.814286e-03   p_joint 1.488286e-02

Joint ci ratio: 5.497278e-02	ci left: 1.354475e-02	ci right 1.431311e-02	k: 5013	n:360000
Cons ci ratio: 1.526776e-01	ci left: 1.688213e-03	ci right 1.969903e-03	k: 657	n:360000
KS ci ratio: 6.212235e-03	ci left: 5.235422e-01	ci right 5.268074e-01	k: 189063	n:360000
IMPG1   360000 perm   130 sec   (2763 perm/sec)   p_kst 5.251750e-01   p_cons 1.825000e-03   p_joint 1.392500e-02

Joint ci ratio: 5.525763e-02	ci left: 1.304797e-02	ci right 1.379211e-02	k: 4964	n:370000
Cons ci ratio: 1.498559e-01	ci left: 1.707597e-03	ci right 1.986783e-03	k: 682	n:370000
KS ci ratio: 6.131490e-03	ci left: 5.232569e-01	ci right 5.264778e-01	k: 194201	n:370000
IMPG1   370000 perm   135 sec   (2734 perm/sec)   p_kst 5.248676e-01   p_cons 1.843243e-03   p_joint 1.341622e-02

Joint ci ratio: 5.503772e-02	ci left: 1.281097e-02	ci right 1.353859e-02	k: 5005	n:380000
Cons ci ratio: 1.474985e-01	ci left: 1.718402e-03	ci right 1.994546e-03	k: 704	n:380000
KS ci ratio: 6.050425e-03	ci left: 5.232660e-01	ci right 5.264442e-01	k: 199445	n:380000
IMPG1   380000 perm   140 sec   (2705 perm/sec)   p_kst 5.248553e-01   p_cons 1.852632e-03   p_joint 1.317105e-02

Joint ci ratio: 5.463949e-02	ci left: 1.266960e-02	ci right 1.338382e-02	k: 5079	n:390000
Cons ci ratio: 1.449497e-01	ci left: 1.736099e-03	ci right 2.009848e-03	k: 729	n:390000
KS ci ratio: 5.970742e-03	ci left: 5.234210e-01	ci right 5.265581e-01	k: 204746	n:390000
IMPG1   390000 perm   146 sec   (2678 perm/sec)   p_kst 5.249897e-01   p_cons 1.869231e-03   p_joint 1.302308e-02

Joint ci ratio: 5.410629e-02	ci left: 1.260191e-02	ci right 1.330517e-02	k: 5180	n:400000
Cons ci ratio: 1.430037e-01	ci left: 1.740896e-03	ci right 2.011402e-03	k: 749	n:400000
KS ci ratio: 5.894746e-03	ci left: 5.235160e-01	ci right 5.266136e-01	k: 210026	n:400000
IMPG1   400000 perm   151 sec   (2651 perm/sec)   p_kst 5.250650e-01   p_cons 1.872500e-03   p_joint 1.295000e-02

Joint ci ratio: 5.346037e-02	ci left: 1.259773e-02	ci right 1.329210e-02	k: 5306	n:410000
Cons ci ratio: 1.409508e-01	ci left: 1.750188e-03	ci right 2.017906e-03	k: 771	n:410000
KS ci ratio: 5.823089e-03	ci left: 5.234774e-01	ci right 5.265369e-01	k: 215253	n:410000
IMPG1   410000 perm   156 sec   (2625 perm/sec)   p_kst 5.250073e-01   p_cons 1.880488e-03   p_joint 1.294146e-02

Joint ci ratio: 5.173858e-02	ci left: 1.313435e-02	ci right 1.383429e-02	k: 5662	n:420000
Cons ci ratio: 1.388963e-01	ci left: 1.761362e-03	ci right 2.026537e-03	k: 794	n:420000
KS ci ratio: 5.754258e-03	ci left: 5.234169e-01	ci right 5.264399e-01	k: 220470	n:420000
IMPG1   420000 perm   161 sec   (2601 perm/sec)   p_kst 5.249286e-01   p_cons 1.890476e-03   p_joint 1.348095e-02

Joint ci ratio: 5.026111e-02	ci left: 1.359812e-02	ci right 1.430148e-02	k: 5997	n:430000
Cons ci ratio: 1.375198e-01	ci left: 1.756323e-03	ci right 2.017904e-03	k: 810	n:430000
KS ci ratio: 5.687784e-03	ci left: 5.233619e-01	ci right 5.263494e-01	k: 225688	n:430000
IMPG1   430000 perm   167 sec   (2576 perm/sec)   p_kst 5.248558e-01   p_cons 1.883721e-03   p_joint 1.394651e-02

Joint ci ratio: 5.318581e-02	ci left: 1.187098e-02	ci right 1.252183e-02	k: 5365	n:440000
Cons ci ratio: 1.363487e-01	ci left: 1.747134e-03	ci right 2.004951e-03	k: 824	n:440000
KS ci ratio: 5.787567e-03	ci left: 5.089536e-01	ci right 5.119099e-01	k: 224590	n:440000
IMPG1   440000 perm   172 sec   (2552 perm/sec)   p_kst 5.104318e-01   p_cons 1.872727e-03   p_joint 1.219318e-02

Joint ci ratio: 5.524010e-02	ci left: 1.076086e-02	ci right 1.137435e-02	k: 4979	n:450000
Cons ci ratio: 1.346455e-01	ci left: 1.753394e-03	ci right 2.008644e-03	k: 845	n:450000
KS ci ratio: 5.722602e-03	ci left: 5.089961e-01	ci right 5.119194e-01	k: 229706	n:450000
IMPG1   450000 perm   178 sec   (2529 perm/sec)   p_kst 5.104578e-01   p_cons 1.877778e-03   p_joint 1.106444e-02

Joint ci ratio: 5.284745e-02	ci left: 1.150710e-02	ci right 1.213386e-02	k: 5436	n:460000
Cons ci ratio: 1.331585e-01	ci left: 1.755198e-03	ci right 2.007664e-03	k: 864	n:460000
KS ci ratio: 5.659433e-03	ci left: 5.090673e-01	ci right 5.119586e-01	k: 234836	n:460000
IMPG1   460000 perm   184 sec   (2505 perm/sec)   p_kst 5.105130e-01   p_cons 1.878261e-03   p_joint 1.181739e-02

Joint ci ratio: 5.298249e-02	ci left: 1.120763e-02	ci right 1.181969e-02	k: 5410	n:470000
Cons ci ratio: 1.318692e-01	ci left: 1.752824e-03	ci right 2.002317e-03	k: 881	n:470000
KS ci ratio: 5.598453e-03	ci left: 5.091229e-01	ci right 5.119833e-01	k: 239960	n:470000
IMPG1   470000 perm   189 sec   (2481 perm/sec)   p_kst 5.105532e-01   p_cons 1.874468e-03   p_joint 1.151064e-02

Joint ci ratio: 5.036194e-02	ci left: 1.215056e-02	ci right 1.278034e-02	k: 5982	n:480000
Cons ci ratio: 1.306167e-01	ci left: 1.750560e-03	ci right 1.997181e-03	k: 898	n:480000
KS ci ratio: 5.540835e-03	ci left: 5.090472e-01	ci right 5.118776e-01	k: 245022	n:480000
IMPG1   480000 perm   196 sec   (2454 perm/sec)   p_kst 5.104625e-01   p_cons 1.870833e-03   p_joint 1.246250e-02

Joint ci ratio: 5.001001e-02	ci left: 1.207387e-02	ci right 1.269518e-02	k: 6067	n:490000
Cons ci ratio: 1.291171e-01	ci left: 1.756300e-03	ci right 2.000671e-03	k: 919	n:490000
KS ci ratio: 5.482608e-03	ci left: 5.091891e-01	ci right 5.119904e-01	k: 250189	n:490000
IMPG1   490000 perm   202 sec   (2431 perm/sec)   p_kst 5.105898e-01   p_cons 1.875510e-03   p_joint 1.238163e-02

Joint ci ratio: 4.986262e-02	ci left: 1.190545e-02	ci right 1.251622e-02	k: 6104	n:500000
Cons ci ratio: 1.278723e-01	ci left: 1.756017e-03	ci right 1.997814e-03	k: 937	n:500000
KS ci ratio: 5.427307e-03	ci left: 5.092214e-01	ci right 5.119945e-01	k: 255304	n:500000
IMPG1   500000 perm   208 sec   (2409 perm/sec)   p_kst 5.106080e-01   p_cons 1.874000e-03   p_joint 1.220800e-02

Joint ci ratio: 5.188904e-02	ci left: 1.077942e-02	ci right 1.135557e-02	k: 5643	n:510000
Cons ci ratio: 1.265965e-01	ci left: 1.757654e-03	ci right 1.997081e-03	k: 956	n:510000
KS ci ratio: 5.372867e-03	ci left: 5.093251e-01	ci right 5.120709e-01	k: 260456	n:510000
IMPG1   510000 perm   214 sec   (2387 perm/sec)   p_kst 5.106980e-01   p_cons 1.874510e-03   p_joint 1.106471e-02

Joint ci ratio: 5.165459e-02	ci left: 1.067081e-02	ci right 1.123850e-02	k: 5695	n:520000
Cons ci ratio: 1.258110e-01	ci left: 1.746201e-03	ci right 1.982482e-03	k: 968	n:520000
KS ci ratio: 5.319296e-03	ci left: 5.094942e-01	ci right 5.122134e-01	k: 265644	n:520000
IMPG1   520000 perm   220 sec   (2366 perm/sec)   p_kst 5.108538e-01   p_cons 1.861538e-03   p_joint 1.095192e-02

Joint ci ratio: 5.140064e-02	ci left: 1.057562e-02	ci right 1.113540e-02	k: 5752	n:530000
Cons ci ratio: 1.247219e-01	ci left: 1.744324e-03	ci right 1.978156e-03	k: 985	n:530000
KS ci ratio: 5.269344e-03	ci left: 5.094626e-01	ci right 5.121561e-01	k: 270729	n:530000
IMPG1   530000 perm   226 sec   (2345 perm/sec)   p_kst 5.108094e-01   p_cons 1.858491e-03   p_joint 1.085283e-02

Joint ci ratio: 5.159657e-02	ci left: 1.030296e-02	ci right 1.085045e-02	k: 5710	n:540000
Cons ci ratio: 1.234143e-01	ci left: 1.749704e-03	ci right 1.981619e-03	k: 1006	n:540000
KS ci ratio: 5.220366e-03	ci left: 5.094713e-01	ci right 5.121397e-01	k: 275835	n:540000
IMPG1   540000 perm   232 sec   (2325 perm/sec)   p_kst 5.108056e-01   p_cons 1.862963e-03   p_joint 1.057407e-02

Joint ci ratio: 5.198466e-02	ci left: 9.966638e-03	ci right 1.050036e-02	k: 5627	n:550000
Cons ci ratio: 1.219096e-01	ci left: 1.761952e-03	ci right 1.992437e-03	k: 1031	n:550000
KS ci ratio: 5.171450e-03	ci left: 5.096034e-01	ci right 5.122474e-01	k: 281009	n:550000
IMPG1   550000 perm   239 sec   (2305 perm/sec)   p_kst 5.109255e-01   p_cons 1.874545e-03   p_joint 1.023091e-02

Joint ci ratio: 5.205490e-02	ci left: 9.763961e-03	ci right 1.028756e-02	k: 5613	n:560000
Cons ci ratio: 1.205158e-01	ci left: 1.772046e-03	ci right 2.001013e-03	k: 1055	n:560000
KS ci ratio: 5.126429e-03	ci left: 5.094827e-01	ci right 5.121029e-01	k: 286044	n:560000
IMPG1   560000 perm   245 sec   (2284 perm/sec)   p_kst 5.107929e-01   p_cons 1.883929e-03   p_joint 1.002321e-02

Joint ci ratio: 5.153821e-02	ci left: 9.788345e-03	ci right 1.030788e-02	k: 5726	n:570000
Cons ci ratio: 1.193348e-01	ci left: 1.776695e-03	ci right 2.003854e-03	k: 1076	n:570000
KS ci ratio: 5.080332e-03	ci left: 5.095856e-01	ci right 5.121827e-01	k: 291204	n:570000
IMPG1   570000 perm   252 sec   (2263 perm/sec)   p_kst 5.108842e-01   p_cons 1.887719e-03   p_joint 1.004561e-02

Joint ci ratio: 5.140690e-02	ci left: 9.670623e-03	ci right 1.018257e-02	k: 5756	n:580000
Cons ci ratio: 1.181879e-01	ci left: 1.781194e-03	ci right 2.006587e-03	k: 1097	n:580000
KS ci ratio: 5.038933e-03	ci left: 5.093402e-01	ci right 5.119149e-01	k: 296164	n:580000
IMPG1   580000 perm   258 sec   (2245 perm/sec)   p_kst 5.106276e-01   p_cons 1.891379e-03   p_joint 9.924138e-03

Joint ci ratio: 5.133479e-02	ci left: 9.535141e-03	ci right 1.003918e-02	k: 5773	n:590000
Cons ci ratio: 1.169688e-01	ci left: 1.788841e-03	ci right 2.012705e-03	k: 1120	n:590000
KS ci ratio: 4.995138e-03	ci left: 5.094422e-01	ci right 5.119950e-01	k: 301324	n:590000
IMPG1   590000 perm   265 sec   (2225 perm/sec)   p_kst 5.107186e-01   p_cons 1.898305e-03   p_joint 9.784746e-03

Joint ci ratio: 5.122269e-02	ci left: 9.418985e-03	ci right 9.915766e-03	k: 5799	n:600000
Cons ci ratio: 1.159390e-01	ci left: 1.791390e-03	ci right 2.013464e-03	k: 1140	n:600000
KS ci ratio: 4.952448e-03	ci left: 5.095426e-01	ci right 5.120740e-01	k: 306485	n:600000
IMPG1   600000 perm   272 sec   (2205 perm/sec)   p_kst 5.108083e-01   p_cons 1.900000e-03   p_joint 9.665000e-03

Joint ci ratio: 5.085629e-02	ci left: 9.400521e-03	ci right 9.892677e-03	k: 5883	n:610000
Cons ci ratio: 1.150850e-01	ci left: 1.789086e-03	ci right 2.009130e-03	k: 1157	n:610000
KS ci ratio: 4.910528e-03	ci left: 5.096709e-01	ci right 5.121814e-01	k: 311665	n:610000
IMPG1   610000 perm   279 sec   (2188 perm/sec)   p_kst 5.109262e-01   p_cons 1.896721e-03   p_joint 9.644262e-03

Joint ci ratio: 5.049763e-02	ci left: 9.382665e-03	ci right 9.870321e-03	k: 5967	n:620000
Cons ci ratio: 1.142984e-01	ci left: 1.785296e-03	ci right 2.003272e-03	k: 1173	n:620000
KS ci ratio: 4.870503e-03	ci left: 5.097081e-01	ci right 5.121983e-01	k: 316791	n:620000
IMPG1   620000 perm   286 sec   (2171 perm/sec)   p_kst 5.109532e-01   p_cons 1.891935e-03   p_joint 9.624194e-03

Joint ci ratio: 4.874659e-02	ci left: 9.912574e-03	ci right 1.040941e-02	k: 6400	n:630000
Cons ci ratio: 1.131946e-01	ci left: 1.792427e-03	ci right 2.009019e-03	k: 1196	n:630000
KS ci ratio: 4.829615e-03	ci left: 5.099331e-01	ci right 5.124033e-01	k: 322036	n:630000
IMPG1   630000 perm   293 sec   (2153 perm/sec)   p_kst 5.111683e-01   p_cons 1.898413e-03   p_joint 1.015873e-02

Joint ci ratio: 4.831400e-02	ci left: 9.935200e-03	ci right 1.042862e-02	k: 6515	n:640000
Cons ci ratio: 1.122144e-01	ci left: 1.796308e-03	ci right 2.011365e-03	k: 1217	n:640000
KS ci ratio: 4.791476e-03	ci left: 5.099698e-01	ci right 5.124207e-01	k: 327165	n:640000
IMPG1   640000 perm   299 sec   (2137 perm/sec)   p_kst 5.111953e-01   p_cons 1.901563e-03   p_joint 1.017969e-02

Joint ci ratio: 4.816870e-02	ci left: 9.843136e-03	ci right 1.033048e-02	k: 6555	n:650000
Cons ci ratio: 1.115300e-01	ci left: 1.791104e-03	ci right 2.004144e-03	k: 1232	n:650000
KS ci ratio: 4.753524e-03	ci left: 5.100794e-01	ci right 5.125113e-01	k: 332342	n:650000
IMPG1   650000 perm   307 sec   (2120 perm/sec)   p_kst 5.112954e-01   p_cons 1.895385e-03   p_joint 1.008462e-02

Joint ci ratio: 4.688213e-02	ci left: 1.023601e-02	ci right 1.072890e-02	k: 6917	n:660000
Cons ci ratio: 1.105479e-01	ci left: 1.796374e-03	ci right 2.008037e-03	k: 1254	n:660000
KS ci ratio: 4.718376e-03	ci left: 5.099826e-01	ci right 5.123961e-01	k: 337385	n:660000
IMPG1   660000 perm   314 sec   (2103 perm/sec)   p_kst 5.111894e-01   p_cons 1.900000e-03   p_joint 1.048030e-02

Joint ci ratio: 4.664795e-02	ci left: 1.018649e-02	ci right 1.067448e-02	k: 6987	n:670000
Cons ci ratio: 1.097637e-01	ci left: 1.795688e-03	ci right 2.005672e-03	k: 1272	n:670000
KS ci ratio: 4.682751e-03	ci left: 5.100217e-01	ci right 5.124170e-01	k: 342517	n:670000
IMPG1   670000 perm   321 sec   (2087 perm/sec)   p_kst 5.112194e-01   p_cons 1.898507e-03   p_joint 1.042836e-02

Joint ci ratio: 4.625855e-02	ci left: 1.020820e-02	ci right 1.069304e-02	k: 7105	n:680000
Cons ci ratio: 1.087430e-01	ci left: 1.803610e-03	ci right 2.012434e-03	k: 1296	n:680000
KS ci ratio: 4.647442e-03	ci left: 5.101111e-01	ci right 5.124888e-01	k: 347684	n:680000
IMPG1   680000 perm   330 sec   (2062 perm/sec)   p_kst 5.113000e-01   p_cons 1.905882e-03   p_joint 1.044853e-02

Joint ci ratio: 4.629172e-02	ci left: 1.004734e-02	ci right 1.052490e-02	k: 7096	n:690000
Cons ci ratio: 1.078320e-01	ci left: 1.808492e-03	ci right 2.016015e-03	k: 1318	n:690000
KS ci ratio: 4.614030e-03	ci left: 5.100777e-01	ci right 5.124381e-01	k: 352768	n:690000
IMPG1   690000 perm   339 sec   (2035 perm/sec)   p_kst 5.112580e-01   p_cons 1.910145e-03   p_joint 1.028406e-02

Joint ci ratio: 4.607919e-02	ci left: 9.997002e-03	ci right 1.046992e-02	k: 7162	n:700000
Cons ci ratio: 1.069037e-01	ci left: 1.814631e-03	ci right 2.020954e-03	k: 1341	n:700000
KS ci ratio: 4.582219e-03	ci left: 5.099482e-01	ci right 5.122917e-01	k: 357784	n:700000
IMPG1   700000 perm   348 sec   (2013 perm/sec)   p_kst 5.111200e-01   p_cons 1.915714e-03   p_joint 1.023143e-02

Joint ci ratio: 4.629850e-02	ci left: 9.764288e-03	ci right 1.022846e-02	k: 7096	n:710000
Cons ci ratio: 1.063901e-01	ci left: 1.806894e-03	ci right 2.011288e-03	k: 1354	n:710000
KS ci ratio: 4.550313e-03	ci left: 5.099041e-01	ci right 5.122310e-01	k: 362858	n:710000
IMPG1   710000 perm   355 sec   (1998 perm/sec)   p_kst 5.110676e-01   p_cons 1.907042e-03   p_joint 9.994366e-03

Joint ci ratio: 4.602743e-02	ci left: 9.743991e-03	ci right 1.020441e-02	k: 7180	n:720000
Cons ci ratio: 1.059615e-01	ci left: 1.796670e-03	ci right 1.999038e-03	k: 1365	n:720000
KS ci ratio: 4.518348e-03	ci left: 5.099405e-01	ci right 5.122511e-01	k: 367989	n:720000
IMPG1   720000 perm   364 sec   (1981 perm/sec)   p_kst 5.110958e-01   p_cons 1.895833e-03   p_joint 9.972222e-03

Joint ci ratio: 4.320814e-02	ci left: 1.090835e-02	ci right 1.139143e-02	k: 8138	n:730000
Cons ci ratio: 1.052322e-01	ci left: 1.797398e-03	ci right 1.998368e-03	k: 1384	n:730000
KS ci ratio: 4.487022e-03	ci left: 5.099786e-01	ci right 5.122734e-01	k: 373122	n:730000
IMPG1   730000 perm   371 sec   (1966 perm/sec)   p_kst 5.111260e-01   p_cons 1.895890e-03   p_joint 1.114795e-02

Joint ci ratio: 4.291913e-02	ci left: 1.090799e-02	ci right 1.138774e-02	k: 8248	n:740000
Cons ci ratio: 1.045550e-01	ci left: 1.796795e-03	ci right 1.996326e-03	k: 1402	n:740000
KS ci ratio: 4.456617e-03	ci left: 5.099847e-01	ci right 5.122639e-01	k: 378232	n:740000
IMPG1   740000 perm   379 sec   (1953 perm/sec)   p_kst 5.111243e-01   p_cons 1.894595e-03   p_joint 1.114595e-02

Joint ci ratio: 4.295660e-02	ci left: 1.074538e-02	ci right 1.121841e-02	k: 8235	n:750000
Cons ci ratio: 1.039641e-01	ci left: 1.793615e-03	ci right 1.991598e-03	k: 1418	n:750000
KS ci ratio: 4.427305e-03	ci left: 5.099360e-01	ci right 5.121999e-01	k: 383301	n:750000
IMPG1   750000 perm   387 sec   (1937 perm/sec)   p_kst 5.110680e-01   p_cons 1.890667e-03   p_joint 1.098000e-02

Joint ci ratio: 4.323118e-02	ci left: 1.047120e-02	ci right 1.093517e-02	k: 8133	n:760000
Cons ci ratio: 1.034915e-01	ci left: 1.786676e-03	ci right 1.982942e-03	k: 1431	n:760000
KS ci ratio: 4.398738e-03	ci left: 5.098689e-01	ci right 5.121179e-01	k: 388355	n:760000
IMPG1   760000 perm   395 sec   (1924 perm/sec)   p_kst 5.109934e-01   p_cons 1.882895e-03   p_joint 1.070132e-02

Joint ci ratio: 4.200901e-02	ci left: 1.094686e-02	ci right 1.141787e-02	k: 8609	n:770000
Cons ci ratio: 1.029896e-01	ci left: 1.781184e-03	ci right 1.975841e-03	k: 1445	n:770000
KS ci ratio: 4.369786e-03	ci left: 5.099101e-01	ci right 5.121444e-01	k: 393491	n:770000
IMPG1   770000 perm   403 sec   (1910 perm/sec)   p_kst 5.110273e-01   p_cons 1.876623e-03   p_joint 1.118052e-02

Joint ci ratio: 4.224084e-02	ci left: 1.068978e-02	ci right 1.115233e-02	k: 8517	n:780000
Cons ci ratio: 1.024950e-01	ci left: 1.775836e-03	ci right 1.968919e-03	k: 1459	n:780000
KS ci ratio: 4.342857e-03	ci left: 5.097823e-01	ci right 5.120023e-01	k: 398496	n:780000
IMPG1   780000 perm   411 sec   (1897 perm/sec)   p_kst 5.108923e-01   p_cons 1.870513e-03   p_joint 1.091923e-02

Joint ci ratio: 4.207435e-02	ci left: 1.063963e-02	ci right 1.109815e-02	k: 8585	n:790000
Cons ci ratio: 1.019727e-01	ci left: 1.771859e-03	ci right 1.963469e-03	k: 1474	n:790000
KS ci ratio: 4.314965e-03	ci left: 5.098261e-01	ci right 5.120320e-01	k: 403634	n:790000
IMPG1   790000 perm   419 sec   (1884 perm/sec)   p_kst 5.109291e-01   p_cons 1.865823e-03   p_joint 1.086709e-02

Joint ci ratio: 4.050416e-02	ci left: 1.133804e-02	ci right 1.180800e-02	k: 9257	n:800000
Cons ci ratio: 1.014584e-01	ci left: 1.767983e-03	ci right 1.958153e-03	k: 1489	n:800000
KS ci ratio: 4.287690e-03	ci left: 5.098589e-01	ci right 5.120510e-01	k: 408764	n:800000
IMPG1   800000 perm   428 sec   (1871 perm/sec)   p_kst 5.109550e-01   p_cons 1.861250e-03   p_joint 1.157125e-02

Joint ci ratio: 3.986940e-02	ci left: 1.155863e-02	ci right 1.203005e-02	k: 9552	n:810000
Cons ci ratio: 1.008511e-01	ci left: 1.767816e-03	ci right 1.956762e-03	k: 1507	n:810000
KS ci ratio: 4.260104e-03	ci left: 5.099873e-01	ci right 5.121657e-01	k: 413972	n:810000
IMPG1   810000 perm   436 sec   (1858 perm/sec)   p_kst 5.110765e-01   p_cons 1.860494e-03   p_joint 1.179259e-02

Joint ci ratio: 3.986386e-02	ci left: 1.142249e-02	ci right 1.188829e-02	k: 9556	n:820000
Cons ci ratio: 1.003864e-01	ci left: 1.762901e-03	ci right 1.950402e-03	k: 1521	n:820000
KS ci ratio: 4.233746e-03	ci left: 5.100296e-01	ci right 5.121947e-01	k: 419112	n:820000
IMPG1   820000 perm   444 sec   (1846 perm/sec)   p_kst 5.111122e-01   p_cons 1.854878e-03   p_joint 1.165366e-02

Joint ci ratio: 3.975323e-02	ci left: 1.134927e-02	ci right 1.181077e-02	k: 9610	n:830000
Cons ci ratio: 1.000588e-01	ci left: 1.753407e-03	ci right 1.939254e-03	k: 1531	n:830000
KS ci ratio: 4.207953e-03	ci left: 5.100613e-01	ci right 5.122133e-01	k: 424244	n:830000
IMPG1   830000 perm   453 sec   (1834 perm/sec)   p_kst 5.111373e-01   p_cons 1.844578e-03   p_joint 1.157831e-02

Joint ci ratio: 3.921474e-02	ci left: 1.152536e-02	ci right 1.198754e-02	k: 9874	n:840000
Cons ci ratio: 9.941190e-02	ci left: 1.755749e-03	ci right 1.940571e-03	k: 1551	n:840000
KS ci ratio: 4.183104e-03	ci left: 5.100351e-01	ci right 5.121743e-01	k: 429328	n:840000
IMPG1   840000 perm   461 sec   (1821 perm/sec)   p_kst 5.111048e-01   p_cons 1.846429e-03   p_joint 1.175476e-02

Outputting figure to mutsig2_images.part000000000085/IMPG1.7_2462_840000_0.5111_0.0018464_0.011755.png
                gene_name: IMPG1
               theta_stop: 0.099 
                    nperm: 840000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.0018 
      ci_cons_bounds_left: 0.0018 
     ci_cons_bounds_right: 0.0019 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.012 

Current progress: 12 percent done.
INPP4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.451724e-02	ci left: 7.098755e-01	ci right 7.275970e-01	k: 7188	n:10000
Cons ci ratio: 4.746511e-02	ci left: 3.957559e-01	ci right 4.150992e-01	k: 4054	n:10000
KS ci ratio: 2.865516e-02	ci left: 6.422690e-01	ci right 6.610426e-01	k: 6517	n:10000
INPP4B   10000 perm   2 sec   (5163 perm/sec)   p_kst 6.517000e-01   p_cons 4.054000e-01   p_joint 7.188000e-01

Outputting figure to mutsig2_images.part000000000085/INPP4B.7_2867_10000_0.6517_0.4054_0.7188.png
                gene_name: INPP4B
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 14 percent done.
IL5RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.003386e-02	ci left: 4.795567e-01	ci right 4.992495e-01	k: 4894	n:10000
KS ci ratio: 2.084912e-02	ci left: 7.712435e-01	ci right 7.875934e-01	k: 7795	n:10000
IL5RA   10000 perm   2 sec   (5808 perm/sec)   p_kst 7.795000e-01   p_cons 4.894000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IL5RA.6_1329_10000_0.7795_0.4894_1.png
                gene_name: IL5RA
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
ING1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
Cons ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
KS ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
ING1   10000 perm   2 sec   (5705 perm/sec)   p_kst 1.700000e-03   p_cons 3.740000e-02   p_joint 1.050000e-02

Joint ci ratio: 4.077371e-01	ci left: 3.664911e-03	ci right 5.583495e-03	k: 91	n:20000
Cons ci ratio: 1.406204e-01	ci left: 3.476452e-02	ci right 4.007106e-02	k: 747	n:20000
KS ci ratio: 6.191709e-01	ci left: 1.386997e-03	ci right 2.664760e-03	k: 39	n:20000
ING1   20000 perm   4 sec   (5170 perm/sec)   p_kst 1.950000e-03   p_cons 3.735000e-02   p_joint 4.550000e-03

Joint ci ratio: 3.730653e-01	ci left: 2.984266e-03	ci right 4.381238e-03	k: 109	n:30000
Cons ci ratio: 1.183696e-01	ci left: 3.317548e-02	ci right 3.738181e-02	k: 1057	n:30000
KS ci ratio: 5.142149e-01	ci left: 1.439349e-03	ci right 2.460979e-03	k: 57	n:30000
ING1   30000 perm   6 sec   (4903 perm/sec)   p_kst 1.900000e-03   p_cons 3.523333e-02   p_joint 3.633333e-03

Joint ci ratio: 4.247264e-01	ci left: 1.675377e-03	ci right 2.599293e-03	k: 84	n:40000
Cons ci ratio: 1.034914e-01	ci left: 3.283029e-02	ci right 3.643768e-02	k: 1384	n:40000
KS ci ratio: 4.405932e-01	ci left: 1.541690e-03	ci right 2.433099e-03	k: 78	n:40000
ING1   40000 perm   8 sec   (4737 perm/sec)   p_kst 1.950000e-03   p_cons 3.460000e-02   p_joint 2.100000e-03

Joint ci ratio: 3.839838e-01	ci left: 1.681740e-03	ci right 2.497801e-03	k: 103	n:50000
Cons ci ratio: 8.983957e-02	ci left: 3.502974e-02	ci right 3.834434e-02	k: 1833	n:50000
KS ci ratio: 4.128281e-01	ci left: 1.429723e-03	ci right 2.189994e-03	k: 89	n:50000
ING1   50000 perm   11 sec   (4616 perm/sec)   p_kst 1.780000e-03   p_cons 3.666000e-02   p_joint 2.060000e-03

Joint ci ratio: 3.956530e-01	ci left: 1.311197e-03	ci right 1.971846e-03	k: 97	n:60000
Cons ci ratio: 8.179625e-02	ci left: 3.535667e-02	ci right 3.838834e-02	k: 2211	n:60000
KS ci ratio: 3.768594e-01	ci left: 1.461708e-03	ci right 2.154575e-03	k: 107	n:60000
ING1   60000 perm   13 sec   (4514 perm/sec)   p_kst 1.783333e-03   p_cons 3.685000e-02   p_joint 1.616667e-03

Joint ci ratio: 2.043639e-01	ci left: 4.694204e-03	ci right 5.776004e-03	k: 365	n:70000
Cons ci ratio: 7.425725e-02	ci left: 3.686223e-02	ci right 3.971907e-02	k: 2679	n:70000
KS ci ratio: 3.590377e-01	ci left: 1.395503e-03	ci right 2.018400e-03	k: 118	n:70000
ING1   70000 perm   16 sec   (4416 perm/sec)   p_kst 1.685714e-03   p_cons 3.827143e-02   p_joint 5.214286e-03

Joint ci ratio: 2.078829e-01	ci left: 3.965012e-03	ci right 4.896490e-03	k: 353	n:80000
Cons ci ratio: 6.948326e-02	ci left: 3.693144e-02	ci right 3.960218e-02	k: 3060	n:80000
KS ci ratio: 3.286650e-01	ci left: 1.483796e-03	ci right 2.078270e-03	k: 141	n:80000
ING1   80000 perm   18 sec   (4331 perm/sec)   p_kst 1.762500e-03   p_cons 3.825000e-02   p_joint 4.412500e-03

Joint ci ratio: 2.053302e-01	ci left: 3.619213e-03	ci right 4.457696e-03	k: 362	n:90000
Cons ci ratio: 6.557510e-02	ci left: 3.693520e-02	ci right 3.945024e-02	k: 3436	n:90000
KS ci ratio: 3.187356e-01	ci left: 1.410797e-03	ci right 1.955464e-03	k: 150	n:90000
ING1   90000 perm   21 sec   (4252 perm/sec)   p_kst 1.666667e-03   p_cons 3.817778e-02   p_joint 4.022222e-03

Joint ci ratio: 2.053719e-01	ci left: 3.257227e-03	ci right 4.012014e-03	k: 362	n:100000
Cons ci ratio: 6.205720e-02	ci left: 3.717800e-02	ci right 3.956887e-02	k: 3836	n:100000
KS ci ratio: 3.012821e-01	ci left: 1.435728e-03	ci right 1.953863e-03	k: 168	n:100000
ING1   100000 perm   24 sec   (4176 perm/sec)   p_kst 1.680000e-03   p_cons 3.836000e-02   p_joint 3.620000e-03

Joint ci ratio: 1.939465e-01	ci left: 3.341146e-03	ci right 4.067226e-03	k: 406	n:110000
Cons ci ratio: 5.923275e-02	ci left: 3.715557e-02	ci right 3.943250e-02	k: 4211	n:110000
KS ci ratio: 2.903279e-01	ci left: 1.414620e-03	ci right 1.903167e-03	k: 181	n:110000
ING1   110000 perm   27 sec   (4105 perm/sec)   p_kst 1.645455e-03   p_cons 3.828182e-02   p_joint 3.690909e-03

Joint ci ratio: 1.889200e-01	ci left: 3.237248e-03	ci right 3.920422e-03	k: 428	n:120000
Cons ci ratio: 5.665921e-02	ci left: 3.727045e-02	ci right 3.945193e-02	k: 4602	n:120000
KS ci ratio: 2.769536e-01	ci left: 1.436073e-03	ci right 1.905204e-03	k: 199	n:120000
ING1   120000 perm   30 sec   (4039 perm/sec)   p_kst 1.658333e-03   p_cons 3.835000e-02   p_joint 3.566667e-03

Joint ci ratio: 2.086528e-01	ci left: 2.425218e-03	ci right 2.997323e-03	k: 351	n:130000
Cons ci ratio: 5.427018e-02	ci left: 3.753650e-02	ci right 3.963799e-02	k: 5015	n:130000
KS ci ratio: 2.658837e-01	ci left: 1.447481e-03	ci right 1.898292e-03	k: 216	n:130000
ING1   130000 perm   33 sec   (3964 perm/sec)   p_kst 1.661538e-03   p_cons 3.857692e-02   p_joint 2.700000e-03

Joint ci ratio: 2.092700e-01	ci left: 2.238427e-03	ci right 2.768228e-03	k: 349	n:140000
Cons ci ratio: 5.240133e-02	ci left: 3.742763e-02	ci right 3.944868e-02	k: 5380	n:140000
KS ci ratio: 2.538789e-01	ci left: 1.484327e-03	ci right 1.922440e-03	k: 237	n:140000
ING1   140000 perm   36 sec   (3858 perm/sec)   p_kst 1.692857e-03   p_cons 3.842857e-02   p_joint 2.492857e-03

Joint ci ratio: 2.280059e-01	ci left: 1.742521e-03	ci right 2.197075e-03	k: 294	n:150000
Cons ci ratio: 5.065355e-02	ci left: 3.741998e-02	ci right 3.937125e-02	k: 5758	n:150000
KS ci ratio: 2.357383e-01	ci left: 1.623198e-03	ci right 2.063082e-03	k: 275	n:150000
ING1   150000 perm   41 sec   (3639 perm/sec)   p_kst 1.833333e-03   p_cons 3.838667e-02   p_joint 1.960000e-03

Joint ci ratio: 1.567449e-01	ci left: 3.588480e-03	ci right 4.204711e-03	k: 622	n:160000
Cons ci ratio: 4.915728e-02	ci left: 3.728457e-02	ci right 3.916971e-02	k: 6115	n:160000
KS ci ratio: 2.253570e-01	ci left: 1.674872e-03	ci right 2.105998e-03	k: 301	n:160000
ING1   160000 perm   45 sec   (3539 perm/sec)   p_kst 1.881250e-03   p_cons 3.821875e-02   p_joint 3.887500e-03

Joint ci ratio: 1.532239e-01	ci left: 3.541359e-03	ci right 4.134583e-03	k: 651	n:170000
Cons ci ratio: 4.765622e-02	ci left: 3.736355e-02	ci right 3.919341e-02	k: 6506	n:170000
KS ci ratio: 2.206616e-01	ci left: 1.648547e-03	ci right 2.062855e-03	k: 314	n:170000
ING1   170000 perm   49 sec   (3499 perm/sec)   p_kst 1.847059e-03   p_cons 3.827059e-02   p_joint 3.829412e-03

Joint ci ratio: 1.480858e-01	ci left: 3.590547e-03	ci right 4.170056e-03	k: 697	n:180000
Cons ci ratio: 4.629874e-02	ci left: 3.741256e-02	ci right 3.919123e-02	k: 6893	n:180000
KS ci ratio: 2.130190e-01	ci left: 1.677804e-03	ci right 2.082953e-03	k: 337	n:180000
ING1   180000 perm   52 sec   (3461 perm/sec)   p_kst 1.872222e-03   p_cons 3.829444e-02   p_joint 3.872222e-03

Joint ci ratio: 2.058337e-01	ci left: 1.709194e-03	ci right 2.106250e-03	k: 361	n:190000
Cons ci ratio: 4.609460e-02	ci left: 3.582257e-02	ci right 3.751792e-02	k: 6966	n:190000
KS ci ratio: 2.047037e-01	ci left: 1.729166e-03	ci right 2.128381e-03	k: 365	n:190000
ING1   190000 perm   55 sec   (3426 perm/sec)   p_kst 1.921053e-03   p_cons 3.666316e-02   p_joint 1.900000e-03

Joint ci ratio: 2.038782e-01	ci left: 1.656934e-03	ci right 2.037737e-03	k: 368	n:200000
Cons ci ratio: 4.498379e-02	ci left: 3.575654e-02	ci right 3.740693e-02	k: 7315	n:200000
KS ci ratio: 1.998490e-01	ci left: 1.728150e-03	ci right 2.116514e-03	k: 383	n:200000
ING1   200000 perm   59 sec   (3389 perm/sec)   p_kst 1.915000e-03   p_cons 3.657500e-02   p_joint 1.840000e-03

Joint ci ratio: 1.998582e-01	ci left: 1.645850e-03	ci right 2.015737e-03	k: 383	n:210000
Cons ci ratio: 4.390800e-02	ci left: 3.576320e-02	ci right 3.737343e-02	k: 7678	n:210000
KS ci ratio: 1.958128e-01	ci left: 1.718273e-03	ci right 2.095688e-03	k: 399	n:210000
ING1   210000 perm   63 sec   (3350 perm/sec)   p_kst 1.900000e-03   p_cons 3.656190e-02   p_joint 1.823810e-03

Joint ci ratio: 1.996064e-01	ci left: 1.575351e-03	ci right 1.928893e-03	k: 384	n:220000
Cons ci ratio: 4.295857e-02	ci left: 3.568422e-02	ci right 3.725529e-02	k: 8022	n:220000
KS ci ratio: 1.906391e-01	ci left: 1.735334e-03	ci right 2.105259e-03	k: 421	n:220000
ING1   220000 perm   66 sec   (3309 perm/sec)   p_kst 1.913636e-03   p_cons 3.646364e-02   p_joint 1.745455e-03

Joint ci ratio: 2.001354e-01	ci left: 1.498591e-03	ci right 1.835906e-03	k: 382	n:230000
Cons ci ratio: 4.197196e-02	ci left: 3.577170e-02	ci right 3.730957e-02	k: 8403	n:230000
KS ci ratio: 1.866994e-01	ci left: 1.734449e-03	ci right 2.095679e-03	k: 439	n:230000
ING1   230000 perm   72 sec   (3178 perm/sec)   p_kst 1.908696e-03   p_cons 3.653478e-02   p_joint 1.660870e-03

Joint ci ratio: 2.041870e-01	ci left: 1.376804e-03	ci right 1.693763e-03	k: 367	n:240000
Cons ci ratio: 4.104549e-02	ci left: 3.586051e-02	ci right 3.736737e-02	k: 8786	n:240000
KS ci ratio: 1.833960e-01	ci left: 1.725758e-03	ci right 2.078112e-03	k: 455	n:240000
ING1   240000 perm   76 sec   (3148 perm/sec)   p_kst 1.895833e-03   p_cons 3.660833e-02   p_joint 1.529167e-03

Joint ci ratio: 1.988530e-01	ci left: 1.397697e-03	ci right 1.710042e-03	k: 387	n:250000
Cons ci ratio: 4.015505e-02	ci left: 3.598218e-02	ci right 3.746059e-02	k: 9179	n:250000
KS ci ratio: 1.791248e-01	ci left: 1.740737e-03	ci right 2.086974e-03	k: 477	n:250000
ING1   250000 perm   80 sec   (3119 perm/sec)   p_kst 1.908000e-03   p_cons 3.671600e-02   p_joint 1.548000e-03

Joint ci ratio: 1.983476e-01	ci left: 1.351246e-03	ci right 1.652349e-03	k: 389	n:260000
Cons ci ratio: 3.939069e-02	ci left: 3.596909e-02	ci right 3.741819e-02	k: 9539	n:260000
KS ci ratio: 1.767397e-01	ci left: 1.721557e-03	ci right 2.058932e-03	k: 490	n:260000
ING1   260000 perm   84 sec   (3090 perm/sec)   p_kst 1.884615e-03   p_cons 3.668846e-02   p_joint 1.496154e-03

Joint ci ratio: 2.022869e-01	ci left: 1.248424e-03	ci right 1.532822e-03	k: 374	n:270000
Cons ci ratio: 3.874972e-02	ci left: 3.581045e-02	ci right 3.722915e-02	k: 9859	n:270000
KS ci ratio: 1.739295e-01	ci left: 1.714454e-03	ci right 2.044534e-03	k: 506	n:270000
ING1   270000 perm   88 sec   (3061 perm/sec)   p_kst 1.874074e-03   p_cons 3.651481e-02   p_joint 1.385185e-03

Joint ci ratio: 2.140439e-01	ci left: 1.068410e-03	ci right 1.327806e-03	k: 334	n:280000
Cons ci ratio: 3.802867e-02	ci left: 3.586502e-02	ci right 3.725888e-02	k: 10236	n:280000
KS ci ratio: 1.719091e-01	ci left: 1.694224e-03	ci right 2.016227e-03	k: 518	n:280000
ING1   280000 perm   92 sec   (3029 perm/sec)   p_kst 1.850000e-03   p_cons 3.655714e-02   p_joint 1.192857e-03

Joint ci ratio: 2.121547e-01	ci left: 1.051153e-03	ci right 1.303813e-03	k: 340	n:290000
Cons ci ratio: 3.747858e-02	ci left: 3.567003e-02	ci right 3.703581e-02	k: 10541	n:290000
KS ci ratio: 1.690035e-01	ci left: 1.695224e-03	ci right 2.011416e-03	k: 536	n:290000
ING1   290000 perm   97 sec   (3001 perm/sec)   p_kst 1.848276e-03   p_cons 3.634828e-02   p_joint 1.172414e-03

Joint ci ratio: 2.100118e-01	ci left: 1.038213e-03	ci right 1.284919e-03	k: 347	n:300000
Cons ci ratio: 3.687237e-02	ci left: 3.563683e-02	ci right 3.697881e-02	k: 10891	n:300000
KS ci ratio: 1.660906e-01	ci left: 1.699394e-03	ci right 2.010355e-03	k: 555	n:300000
ING1   300000 perm   101 sec   (2973 perm/sec)   p_kst 1.850000e-03   p_cons 3.630333e-02   p_joint 1.156667e-03

Joint ci ratio: 2.100157e-01	ci left: 1.004721e-03	ci right 1.243472e-03	k: 347	n:310000
Cons ci ratio: 3.627456e-02	ci left: 3.564432e-02	ci right 3.696436e-02	k: 11253	n:310000
KS ci ratio: 1.641838e-01	ci left: 1.684776e-03	ci right 1.989174e-03	k: 568	n:310000
ING1   310000 perm   105 sec   (2946 perm/sec)   p_kst 1.832258e-03   p_cons 3.630000e-02   p_joint 1.119355e-03

Joint ci ratio: 2.076437e-01	ci left: 9.970155e-04	ci right 1.230920e-03	k: 355	n:320000
Cons ci ratio: 3.575286e-02	ci left: 3.555856e-02	ci right 3.685610e-02	k: 11585	n:320000
KS ci ratio: 1.609617e-01	ci left: 1.701079e-03	ci right 2.001807e-03	k: 591	n:320000
ING1   320000 perm   110 sec   (2918 perm/sec)   p_kst 1.846875e-03   p_cons 3.620313e-02   p_joint 1.109375e-03

Joint ci ratio: 2.028549e-01	ci left: 1.015672e-03	ci right 1.247777e-03	k: 372	n:330000
Cons ci ratio: 3.514456e-02	ci left: 3.569146e-02	ci right 3.697124e-02	k: 11988	n:330000
KS ci ratio: 1.583094e-01	ci left: 1.707717e-03	ci right 2.004171e-03	k: 611	n:330000
ING1   330000 perm   114 sec   (2889 perm/sec)   p_kst 1.851515e-03   p_cons 3.632727e-02   p_joint 1.127273e-03

Joint ci ratio: 2.001895e-01	ci left: 1.013727e-03	ci right 1.241972e-03	k: 382	n:340000
Cons ci ratio: 3.460832e-02	ci left: 3.573213e-02	ci right 3.699343e-02	k: 12362	n:340000
KS ci ratio: 1.554149e-01	ci left: 1.722483e-03	ci right 2.015524e-03	k: 634	n:340000
ING1   340000 perm   119 sec   (2858 perm/sec)   p_kst 1.864706e-03   p_cons 3.635882e-02   p_joint 1.123529e-03

Joint ci ratio: 2.076536e-01	ci left: 9.115528e-04	ci right 1.125418e-03	k: 355	n:350000
Cons ci ratio: 3.414183e-02	ci left: 3.567711e-02	ci right 3.691916e-02	k: 12703	n:350000
KS ci ratio: 1.537305e-01	ci left: 1.711721e-03	ci right 1.999484e-03	k: 648	n:350000
ING1   350000 perm   124 sec   (2831 perm/sec)   p_kst 1.851429e-03   p_cons 3.629429e-02   p_joint 1.014286e-03

Joint ci ratio: 2.042394e-01	ci left: 9.178466e-04	ci right 1.129206e-03	k: 367	n:360000
Cons ci ratio: 3.206233e-02	ci left: 3.922713e-02	ci right 4.050807e-02	k: 14351	n:360000
KS ci ratio: 1.517561e-01	ci left: 1.709590e-03	ci right 1.992969e-03	k: 665	n:360000
ING1   360000 perm   128 sec   (2805 perm/sec)   p_kst 1.847222e-03   p_cons 3.986389e-02   p_joint 1.019444e-03

Joint ci ratio: 2.012534e-01	ci left: 9.212606e-04	ci right 1.129924e-03	k: 378	n:370000
Cons ci ratio: 3.160452e-02	ci left: 3.928769e-02	ci right 4.055196e-02	k: 14769	n:370000
KS ci ratio: 1.494182e-01	ci left: 1.718004e-03	ci right 1.997998e-03	k: 686	n:370000
ING1   370000 perm   133 sec   (2778 perm/sec)   p_kst 1.854054e-03   p_cons 3.991622e-02   p_joint 1.021622e-03

Joint ci ratio: 2.036916e-01	ci left: 8.745312e-04	ci right 1.075309e-03	k: 369	n:380000
Cons ci ratio: 3.121076e-02	ci left: 3.923549e-02	ci right 4.048206e-02	k: 15145	n:380000
KS ci ratio: 1.481314e-01	ci left: 1.703196e-03	ci right 1.978174e-03	k: 698	n:380000
ING1   380000 perm   138 sec   (2752 perm/sec)   p_kst 1.836842e-03   p_cons 3.985526e-02   p_joint 9.710526e-04

Joint ci ratio: 2.017924e-01	ci left: 8.691446e-04	ci right 1.066596e-03	k: 376	n:390000
Cons ci ratio: 3.080552e-02	ci left: 3.924969e-02	ci right 4.048024e-02	k: 15546	n:390000
KS ci ratio: 1.464651e-01	ci left: 1.699037e-03	ci right 1.969988e-03	k: 714	n:390000
ING1   390000 perm   143 sec   (2726 perm/sec)   p_kst 1.830769e-03   p_cons 3.986154e-02   p_joint 9.641026e-04

Joint ci ratio: 2.002065e-01	ci left: 8.616607e-04	ci right 1.055685e-03	k: 382	n:400000
Cons ci ratio: 3.044053e-02	ci left: 3.920123e-02	ci right 4.041544e-02	k: 15922	n:400000
KS ci ratio: 1.450526e-01	ci left: 1.690284e-03	ci right 1.957015e-03	k: 728	n:400000
ING1   400000 perm   148 sec   (2701 perm/sec)   p_kst 1.820000e-03   p_cons 3.980500e-02   p_joint 9.550000e-04

Joint ci ratio: 1.986573e-01	ci left: 8.545477e-04	ci right 1.045301e-03	k: 388	n:410000
Cons ci ratio: 3.007381e-02	ci left: 3.919155e-02	ci right 4.039058e-02	k: 16313	n:410000
KS ci ratio: 1.432944e-01	ci left: 1.691377e-03	ci right 1.954768e-03	k: 746	n:410000
ING1   410000 perm   153 sec   (2676 perm/sec)   p_kst 1.819512e-03   p_cons 3.978780e-02   p_joint 9.463415e-04

Joint ci ratio: 2.007363e-01	ci left: 8.161044e-04	ci right 1.000417e-03	k: 380	n:420000
Cons ci ratio: 2.976551e-02	ci left: 3.906657e-02	ci right 4.024932e-02	k: 16655	n:420000
KS ci ratio: 1.455599e-01	ci left: 1.598317e-03	ci right 1.851493e-03	k: 723	n:420000
ING1   420000 perm   159 sec   (2647 perm/sec)   p_kst 1.721429e-03   p_cons 3.965476e-02   p_joint 9.047619e-04

Joint ci ratio: 2.007385e-01	ci left: 7.971244e-04	ci right 9.771523e-04	k: 380	n:430000
Cons ci ratio: 2.940083e-02	ci left: 3.911603e-02	ci right 4.028553e-02	k: 17070	n:430000
KS ci ratio: 1.446649e-01	ci left: 1.581316e-03	ci right 1.830126e-03	k: 732	n:430000
ING1   430000 perm   164 sec   (2621 perm/sec)   p_kst 1.702326e-03   p_cons 3.969767e-02   p_joint 8.837209e-04

Joint ci ratio: 1.991769e-01	ci left: 7.919614e-04	ci right 9.692628e-04	k: 386	n:440000
Cons ci ratio: 2.906654e-02	ci left: 3.911820e-02	ci right 4.027424e-02	k: 17465	n:440000
KS ci ratio: 1.430160e-01	ci left: 1.582623e-03	ci right 1.828558e-03	k: 749	n:440000
ING1   440000 perm   169 sec   (2597 perm/sec)   p_kst 1.702273e-03   p_cons 3.969318e-02   p_joint 8.772727e-04

Joint ci ratio: 1.966521e-01	ci left: 7.954835e-04	ci right 9.710455e-04	k: 396	n:450000
Cons ci ratio: 2.874592e-02	ci left: 3.911372e-02	ci right 4.025666e-02	k: 17857	n:450000
KS ci ratio: 1.410542e-01	ci left: 1.592463e-03	ci right 1.836247e-03	k: 770	n:450000
ING1   450000 perm   175 sec   (2574 perm/sec)   p_kst 1.711111e-03   p_cons 3.968222e-02   p_joint 8.800000e-04

Joint ci ratio: 1.951833e-01	ci left: 7.905938e-04	ci right 9.636185e-04	k: 402	n:460000
Cons ci ratio: 2.844866e-02	ci left: 3.907496e-02	ci right 4.020477e-02	k: 18233	n:460000
KS ci ratio: 1.394358e-01	ci left: 1.595602e-03	ci right 1.836831e-03	k: 788	n:460000
ING1   460000 perm   180 sec   (2551 perm/sec)   p_kst 1.713043e-03   p_cons 3.963696e-02   p_joint 8.739130e-04

Joint ci ratio: 1.937470e-01	ci left: 7.859169e-04	ci right 9.565030e-04	k: 408	n:470000
Cons ci ratio: 2.814470e-02	ci left: 3.908017e-02	ci right 4.019786e-02	k: 18629	n:470000
KS ci ratio: 1.380433e-01	ci left: 1.594513e-03	ci right 1.832973e-03	k: 804	n:470000
ING1   470000 perm   186 sec   (2526 perm/sec)   p_kst 1.710638e-03   p_cons 3.963617e-02   p_joint 8.680851e-04

Joint ci ratio: 2.012772e-01	ci left: 7.101304e-04	ci right 8.709940e-04	k: 378	n:480000
Cons ci ratio: 2.785561e-02	ci left: 3.907074e-02	ci right 4.017650e-02	k: 19018	n:480000
KS ci ratio: 1.365253e-01	ci left: 1.597507e-03	ci right 1.833573e-03	k: 822	n:480000
ING1   480000 perm   192 sec   (2503 perm/sec)   p_kst 1.712500e-03   p_cons 3.962083e-02   p_joint 7.875000e-04

Joint ci ratio: 1.999631e-01	ci left: 7.053293e-04	ci right 8.639348e-04	k: 383	n:490000
Cons ci ratio: 2.758487e-02	ci left: 3.903539e-02	ci right 4.012925e-02	k: 19394	n:490000
KS ci ratio: 1.353791e-01	ci left: 1.592504e-03	ci right 1.825696e-03	k: 836	n:490000
ING1   490000 perm   198 sec   (2477 perm/sec)   p_kst 1.706122e-03   p_cons 3.957959e-02   p_joint 7.816327e-04

Joint ci ratio: 2.068152e-01	ci left: 6.437662e-04	ci right 7.941168e-04	k: 358	n:500000
Cons ci ratio: 2.727953e-02	ci left: 3.911874e-02	ci right 4.020260e-02	k: 19829	n:500000
KS ci ratio: 1.341824e-01	ci left: 1.589642e-03	ci right 1.820194e-03	k: 851	n:500000
ING1   500000 perm   204 sec   (2455 perm/sec)   p_kst 1.702000e-03   p_cons 3.965800e-02   p_joint 7.160000e-04

Joint ci ratio: 2.088644e-01	ci left: 6.181313e-04	ci right 7.641082e-04	k: 351	n:510000
Cons ci ratio: 2.700422e-02	ci left: 3.914239e-02	ci right 4.021579e-02	k: 20235	n:510000
KS ci ratio: 1.332480e-01	ci left: 1.581214e-03	ci right 1.808820e-03	k: 863	n:510000
ING1   510000 perm   210 sec   (2434 perm/sec)   p_kst 1.692157e-03   p_cons 3.967647e-02   p_joint 6.882353e-04

Joint ci ratio: 2.065304e-01	ci left: 6.208287e-04	ci right 7.655974e-04	k: 359	n:520000
Cons ci ratio: 2.672698e-02	ci left: 3.919384e-02	ci right 4.025745e-02	k: 20656	n:520000
KS ci ratio: 1.318812e-01	ci left: 1.584274e-03	ci right 1.809798e-03	k: 881	n:520000
ING1   520000 perm   215 sec   (2413 perm/sec)   p_kst 1.694231e-03   p_cons 3.972308e-02   p_joint 6.903846e-04

Joint ci ratio: 2.048307e-01	ci left: 6.198526e-04	ci right 7.630552e-04	k: 365	n:530000
Cons ci ratio: 2.648297e-02	ci left: 3.917216e-02	ci right 4.022533e-02	k: 21039	n:530000
KS ci ratio: 1.307011e-01	ci left: 1.583579e-03	ci right 1.806830e-03	k: 897	n:530000
ING1   530000 perm   222 sec   (2391 perm/sec)   p_kst 1.692453e-03   p_cons 3.969623e-02   p_joint 6.886792e-04

Joint ci ratio: 2.048320e-01	ci left: 6.083735e-04	ci right 7.489251e-04	k: 365	n:540000
Cons ci ratio: 2.624234e-02	ci left: 3.916053e-02	ci right 4.020368e-02	k: 21427	n:540000
KS ci ratio: 1.296944e-01	ci left: 1.579335e-03	ci right 1.800141e-03	k: 911	n:540000
ING1   540000 perm   228 sec   (2372 perm/sec)   p_kst 1.687037e-03   p_cons 3.967963e-02   p_joint 6.759259e-04

Joint ci ratio: 2.088696e-01	ci left: 5.731749e-04	ci right 7.085387e-04	k: 351	n:550000
Cons ci ratio: 2.600256e-02	ci left: 3.916562e-02	ci right 4.019923e-02	k: 21824	n:550000
KS ci ratio: 1.280200e-01	ci left: 1.592850e-03	ci right 1.812452e-03	k: 935	n:550000
ING1   550000 perm   234 sec   (2352 perm/sec)   p_kst 1.700000e-03   p_cons 3.968000e-02   p_joint 6.381818e-04

Joint ci ratio: 2.416606e-01	ci left: 4.129265e-04	ci right 5.280583e-04	k: 262	n:560000
Cons ci ratio: 2.576985e-02	ci left: 3.916880e-02	ci right 4.019311e-02	k: 22220	n:560000
KS ci ratio: 1.268064e-01	ci left: 1.595525e-03	ci right 1.813254e-03	k: 953	n:560000
ING1   560000 perm   240 sec   (2332 perm/sec)   p_kst 1.701786e-03   p_cons 3.967857e-02   p_joint 4.678571e-04

Joint ci ratio: 2.402943e-01	ci left: 4.106275e-04	ci right 5.243746e-04	k: 265	n:570000
Cons ci ratio: 2.556623e-02	ci left: 3.910391e-02	ci right 4.011832e-02	k: 22577	n:570000
KS ci ratio: 1.261478e-01	ci left: 1.584521e-03	ci right 1.799542e-03	k: 963	n:570000
ING1   570000 perm   246 sec   (2313 perm/sec)   p_kst 1.689474e-03   p_cons 3.960877e-02   p_joint 4.649123e-04

Joint ci ratio: 2.380672e-01	ci left: 4.116519e-04	ci right 5.244700e-04	k: 270	n:580000
Cons ci ratio: 2.533116e-02	ci left: 3.914925e-02	ci right 4.015536e-02	k: 22997	n:580000
KS ci ratio: 1.253704e-01	ci left: 1.577240e-03	ci right 1.789856e-03	k: 975	n:580000
ING1   580000 perm   253 sec   (2295 perm/sec)   p_kst 1.681034e-03   p_cons 3.965000e-02   p_joint 4.655172e-04

Joint ci ratio: 2.363296e-01	ci left: 4.110515e-04	ci right 5.227625e-04	k: 274	n:590000
Cons ci ratio: 2.511977e-02	ci left: 3.914086e-02	ci right 4.013824e-02	k: 23386	n:590000
KS ci ratio: 1.246705e-01	ci left: 1.568568e-03	ci right 1.778746e-03	k: 986	n:590000
ING1   590000 perm   259 sec   (2277 perm/sec)   p_kst 1.671186e-03   p_cons 3.963729e-02   p_joint 4.644068e-04

Joint ci ratio: 2.329647e-01	ci left: 4.167503e-04	ci right 5.281653e-04	k: 282	n:600000
Cons ci ratio: 2.490705e-02	ci left: 3.915267e-02	ci right 4.014178e-02	k: 23787	n:600000
KS ci ratio: 1.237959e-01	ci left: 1.565033e-03	ci right 1.773159e-03	k: 1000	n:600000
ING1   600000 perm   266 sec   (2259 perm/sec)   p_kst 1.666667e-03   p_cons 3.964500e-02   p_joint 4.700000e-04

Joint ci ratio: 2.342108e-01	ci left: 4.052878e-04	ci right 5.143019e-04	k: 279	n:610000
Cons ci ratio: 2.471720e-02	ci left: 3.911035e-02	ci right 4.009075e-02	k: 24155	n:610000
KS ci ratio: 1.225770e-01	ci left: 1.571154e-03	ci right 1.777887e-03	k: 1020	n:610000
ING1   610000 perm   272 sec   (2240 perm/sec)   p_kst 1.672131e-03   p_cons 3.959836e-02   p_joint 4.573770e-04

Joint ci ratio: 2.337944e-01	ci left: 4.002692e-04	ci right 5.077142e-04	k: 280	n:620000
Cons ci ratio: 2.453371e-02	ci left: 3.906300e-02	ci right 4.003485e-02	k: 24519	n:620000
KS ci ratio: 1.215105e-01	ci left: 1.573959e-03	ci right 1.779130e-03	k: 1038	n:620000
ING1   620000 perm   279 sec   (2223 perm/sec)   p_kst 1.674194e-03   p_cons 3.954677e-02   p_joint 4.516129e-04

Joint ci ratio: 2.313374e-01	ci left: 4.028847e-04	ci right 5.097329e-04	k: 286	n:630000
Cons ci ratio: 2.433440e-02	ci left: 3.907873e-02	ci right 4.004297e-02	k: 24922	n:630000
KS ci ratio: 1.205856e-01	ci left: 1.573603e-03	ci right 1.777055e-03	k: 1054	n:630000
ING1   630000 perm   286 sec   (2205 perm/sec)   p_kst 1.673016e-03   p_cons 3.955873e-02   p_joint 4.539683e-04

Joint ci ratio: 2.301380e-01	ci left: 4.010061e-04	ci right 5.067263e-04	k: 289	n:640000
Cons ci ratio: 2.414831e-02	ci left: 3.906760e-02	ci right 4.002408e-02	k: 25308	n:640000
KS ci ratio: 1.197937e-01	ci left: 1.570233e-03	ci right 1.771821e-03	k: 1068	n:640000
ING1   640000 perm   293 sec   (2187 perm/sec)   p_kst 1.668750e-03   p_cons 3.954375e-02   p_joint 4.515625e-04

Joint ci ratio: 2.317433e-01	ci left: 3.890387e-04	ci right 4.924217e-04	k: 285	n:650000
Cons ci ratio: 2.396933e-02	ci left: 3.904765e-02	ci right 3.999646e-02	k: 25688	n:650000
KS ci ratio: 1.191273e-01	ci left: 1.563985e-03	ci right 1.763576e-03	k: 1080	n:650000
ING1   650000 perm   300 sec   (2170 perm/sec)   p_kst 1.661538e-03   p_cons 3.952000e-02   p_joint 4.384615e-04

Joint ci ratio: 2.309376e-01	ci left: 3.859988e-04	ci right 4.881665e-04	k: 287	n:660000
Cons ci ratio: 2.378573e-02	ci left: 3.905545e-02	ci right 3.999708e-02	k: 26086	n:660000
KS ci ratio: 1.179328e-01	ci left: 1.572634e-03	ci right 1.771175e-03	k: 1102	n:660000
ING1   660000 perm   307 sec   (2153 perm/sec)   p_kst 1.669697e-03   p_cons 3.952424e-02   p_joint 4.348485e-04

Joint ci ratio: 2.289586e-01	ci left: 3.872705e-04	ci right 4.887722e-04	k: 292	n:670000
Cons ci ratio: 2.361976e-02	ci left: 3.902001e-02	ci right 3.995413e-02	k: 26455	n:670000
KS ci ratio: 1.172443e-01	ci left: 1.567994e-03	ci right 1.764714e-03	k: 1115	n:670000
ING1   670000 perm   314 sec   (2137 perm/sec)   p_kst 1.664179e-03   p_cons 3.948507e-02   p_joint 4.358209e-04

Joint ci ratio: 2.281815e-01	ci left: 3.843480e-04	ci right 4.846938e-04	k: 294	n:680000
Cons ci ratio: 2.345447e-02	ci left: 3.899440e-02	ci right 3.992129e-02	k: 26830	n:680000
KS ci ratio: 1.165676e-01	ci left: 1.563493e-03	ci right 1.758439e-03	k: 1128	n:680000
ING1   680000 perm   321 sec   (2120 perm/sec)   p_kst 1.658824e-03   p_cons 3.945588e-02   p_joint 4.323529e-04

Joint ci ratio: 2.266502e-01	ci left: 3.842446e-04	ci right 4.837960e-04	k: 298	n:690000
Cons ci ratio: 2.327881e-02	ci left: 3.901424e-02	ci right 3.993456e-02	k: 27236	n:690000
KS ci ratio: 1.155988e-01	ci left: 1.567571e-03	ci right 1.761289e-03	k: 1147	n:690000
ING1   690000 perm   328 sec   (2104 perm/sec)   p_kst 1.662319e-03   p_cons 3.947246e-02   p_joint 4.318841e-04

Joint ci ratio: 2.258963e-01	ci left: 3.814505e-04	ci right 4.799036e-04	k: 300	n:700000
Cons ci ratio: 2.310877e-02	ci left: 3.902785e-02	ci right 3.994168e-02	k: 27638	n:700000
KS ci ratio: 1.147522e-01	ci left: 1.568763e-03	ci right 1.761113e-03	k: 1164	n:700000
ING1   700000 perm   335 sec   (2089 perm/sec)   p_kst 1.662857e-03   p_cons 3.948286e-02   p_joint 4.285714e-04

Joint ci ratio: 2.236777e-01	ci left: 3.840530e-04	ci right 4.820700e-04	k: 306	n:710000
Cons ci ratio: 2.294795e-02	ci left: 3.902289e-02	ci right 3.993017e-02	k: 28027	n:710000
KS ci ratio: 1.141661e-01	ci left: 1.563085e-03	ci right 1.753694e-03	k: 1176	n:710000
ING1   710000 perm   342 sec   (2073 perm/sec)   p_kst 1.656338e-03   p_cons 3.947465e-02   p_joint 4.309859e-04

Joint ci ratio: 2.236784e-01	ci left: 3.787188e-04	ci right 4.753748e-04	k: 306	n:720000
Cons ci ratio: 2.278835e-02	ci left: 3.902500e-02	ci right 3.992593e-02	k: 28421	n:720000
KS ci ratio: 1.135411e-01	ci left: 1.558917e-03	ci right 1.747907e-03	k: 1189	n:720000
ING1   720000 perm   350 sec   (2055 perm/sec)   p_kst 1.651389e-03   p_cons 3.947361e-02   p_joint 4.250000e-04

Joint ci ratio: 2.229537e-01	ci left: 3.761173e-04	ci right 4.717556e-04	k: 308	n:730000
Cons ci ratio: 2.263407e-02	ci left: 3.902026e-02	ci right 3.991491e-02	k: 28810	n:730000
KS ci ratio: 1.125055e-01	ci left: 1.566847e-03	ci right 1.754951e-03	k: 1211	n:730000
ING1   730000 perm   358 sec   (2040 perm/sec)   p_kst 1.658904e-03   p_cons 3.946575e-02   p_joint 4.219178e-04

Joint ci ratio: 2.229543e-01	ci left: 3.710345e-04	ci right 4.653807e-04	k: 308	n:740000
Cons ci ratio: 2.249051e-02	ci left: 3.899013e-02	ci right 3.987834e-02	k: 29180	n:740000
KS ci ratio: 1.115883e-01	ci left: 1.571943e-03	ci right 1.759019e-03	k: 1231	n:740000
ING1   740000 perm   365 sec   (2025 perm/sec)   p_kst 1.663514e-03   p_cons 3.943243e-02   p_joint 4.162162e-04

Joint ci ratio: 2.215251e-01	ci left: 3.711238e-04	ci right 4.648054e-04	k: 312	n:750000
Cons ci ratio: 2.232606e-02	ci left: 3.904040e-02	ci right 3.992317e-02	k: 29610	n:750000
KS ci ratio: 1.109598e-01	ci left: 1.569131e-03	ci right 1.754752e-03	k: 1245	n:750000
ING1   750000 perm   373 sec   (2010 perm/sec)   p_kst 1.660000e-03   p_cons 3.948000e-02   p_joint 4.160000e-04

Joint ci ratio: 1.504794e-01	ci left: 8.249699e-04	ci right 9.604597e-04	k: 677	n:760000
Cons ci ratio: 2.218055e-02	ci left: 3.903701e-02	ci right 3.991387e-02	k: 30000	n:760000
KS ci ratio: 1.102105e-01	ci left: 1.570234e-03	ci right 1.754650e-03	k: 1262	n:760000
ING1   760000 perm   381 sec   (1996 perm/sec)   p_kst 1.660526e-03   p_cons 3.947368e-02   p_joint 8.907895e-04

Joint ci ratio: 1.493817e-01	ci left: 8.267559e-04	ci right 9.614600e-04	k: 687	n:770000
Cons ci ratio: 2.203595e-02	ci left: 3.904019e-02	ci right 3.991133e-02	k: 30395	n:770000
KS ci ratio: 1.093906e-01	ci left: 1.573839e-03	ci right 1.757215e-03	k: 1281	n:770000
ING1   770000 perm   388 sec   (1982 perm/sec)   p_kst 1.663636e-03   p_cons 3.947403e-02   p_joint 8.922078e-04

Joint ci ratio: 1.486277e-01	ci left: 8.247962e-04	ci right 9.584424e-04	k: 694	n:780000
Cons ci ratio: 2.189637e-02	ci left: 3.903565e-02	ci right 3.990111e-02	k: 30784	n:780000
KS ci ratio: 1.082558e-01	ci left: 1.587336e-03	ci right 1.770243e-03	k: 1308	n:780000
ING1   780000 perm   396 sec   (1968 perm/sec)   p_kst 1.676923e-03   p_cons 3.946667e-02   p_joint 8.897436e-04

Joint ci ratio: 1.507046e-01	ci left: 7.912047e-04	ci right 9.213609e-04	k: 675	n:790000
Cons ci ratio: 2.176050e-02	ci left: 3.902747e-02	ci right 3.988731e-02	k: 31170	n:790000
KS ci ratio: 1.078042e-01	ci left: 1.580791e-03	ci right 1.762135e-03	k: 1319	n:790000
ING1   790000 perm   404 sec   (1954 perm/sec)   p_kst 1.669620e-03   p_cons 3.945570e-02   p_joint 8.544304e-04

Joint ci ratio: 1.517196e-01	ci left: 7.704896e-04	ci right 8.981694e-04	k: 666	n:800000
Cons ci ratio: 2.162178e-02	ci left: 3.903816e-02	ci right 3.989268e-02	k: 31571	n:800000
KS ci ratio: 1.073582e-01	ci left: 1.574410e-03	ci right 1.754229e-03	k: 1330	n:800000
ING1   800000 perm   412 sec   (1941 perm/sec)   p_kst 1.662500e-03   p_cons 3.946375e-02   p_joint 8.325000e-04

Joint ci ratio: 1.520630e-01	ci left: 7.574141e-04	ci right 8.832370e-04	k: 663	n:810000
Cons ci ratio: 2.148322e-02	ci left: 3.905720e-02	ci right 3.990660e-02	k: 31979	n:810000
KS ci ratio: 1.066394e-01	ci left: 1.576601e-03	ci right 1.755388e-03	k: 1348	n:810000
ING1   810000 perm   421 sec   (1926 perm/sec)   p_kst 1.664198e-03   p_cons 3.948025e-02   p_joint 8.185185e-04

Joint ci ratio: 1.689476e-01	ci left: 6.006692e-04	ci right 7.126631e-04	k: 537	n:820000
Cons ci ratio: 2.134730e-02	ci left: 3.907579e-02	ci right 3.992015e-02	k: 32387	n:820000
KS ci ratio: 1.061295e-01	ci left: 1.572806e-03	ci right 1.750257e-03	k: 1361	n:820000
ING1   820000 perm   429 sec   (1912 perm/sec)   p_kst 1.659756e-03   p_cons 3.949634e-02   p_joint 6.548780e-04

Joint ci ratio: 1.695803e-01	ci left: 5.888168e-04	ci right 6.990540e-04	k: 533	n:830000
Cons ci ratio: 2.121965e-02	ci left: 3.907357e-02	ci right 3.991278e-02	k: 32778	n:830000
KS ci ratio: 1.055116e-01	ci left: 1.572623e-03	ci right 1.748956e-03	k: 1377	n:830000
ING1   830000 perm   437 sec   (1899 perm/sec)   p_kst 1.659036e-03   p_cons 3.949157e-02   p_joint 6.421687e-04

Joint ci ratio: 1.716849e-01	ci left: 5.669912e-04	ci right 6.745961e-04	k: 520	n:840000
Cons ci ratio: 2.110089e-02	ci left: 3.904774e-02	ci right 3.988163e-02	k: 33149	n:840000
KS ci ratio: 1.047540e-01	ci left: 1.577085e-03	ci right 1.752571e-03	k: 1397	n:840000
ING1   840000 perm   445 sec   (1887 perm/sec)   p_kst 1.663095e-03   p_cons 3.946310e-02   p_joint 6.190476e-04

Joint ci ratio: 1.708671e-01	ci left: 5.659509e-04	ci right 6.727940e-04	k: 525	n:850000
Cons ci ratio: 2.097889e-02	ci left: 3.904125e-02	ci right 3.987013e-02	k: 33536	n:850000
KS ci ratio: 1.040492e-01	ci left: 1.580301e-03	ci right 1.754888e-03	k: 1416	n:850000
ING1   850000 perm   453 sec   (1875 perm/sec)   p_kst 1.665882e-03   p_cons 3.945412e-02   p_joint 6.176471e-04

Joint ci ratio: 1.713574e-01	ci left: 5.560308e-04	ci right 6.613335e-04	k: 522	n:860000
Cons ci ratio: 2.085802e-02	ci left: 3.903840e-02	ci right 3.986238e-02	k: 33926	n:860000
KS ci ratio: 1.035029e-01	ci left: 1.578914e-03	ci right 1.752377e-03	k: 1431	n:860000
ING1   860000 perm   462 sec   (1863 perm/sec)   p_kst 1.663953e-03   p_cons 3.944884e-02   p_joint 6.069767e-04

Joint ci ratio: 1.697419e-01	ci left: 5.606434e-04	ci right 6.657163e-04	k: 532	n:870000
Cons ci ratio: 2.073356e-02	ci left: 3.905621e-02	ci right 3.987560e-02	k: 34334	n:870000
KS ci ratio: 1.029295e-01	ci left: 1.578682e-03	ci right 1.751100e-03	k: 1447	n:870000
ING1   870000 perm   470 sec   (1851 perm/sec)   p_kst 1.663218e-03   p_cons 3.946437e-02   p_joint 6.114943e-04

Joint ci ratio: 1.720181e-01	ci left: 5.390432e-04	ci right 6.415632e-04	k: 518	n:880000
Cons ci ratio: 2.062056e-02	ci left: 3.903971e-02	ci right 3.985423e-02	k: 34712	n:880000
KS ci ratio: 1.022956e-01	ci left: 1.580672e-03	ci right 1.752181e-03	k: 1465	n:880000
ING1   880000 perm   479 sec   (1839 perm/sec)   p_kst 1.664773e-03   p_cons 3.944545e-02   p_joint 5.886364e-04

Joint ci ratio: 1.756101e-01	ci left: 5.104168e-04	ci right 6.097346e-04	k: 497	n:890000
Cons ci ratio: 2.050484e-02	ci left: 3.904036e-02	ci right 3.985028e-02	k: 35105	n:890000
KS ci ratio: 1.019142e-01	ci left: 1.574955e-03	ci right 1.745169e-03	k: 1476	n:890000
ING1   890000 perm   487 sec   (1827 perm/sec)   p_kst 1.658427e-03   p_cons 3.944382e-02   p_joint 5.584270e-04

Joint ci ratio: 1.745617e-01	ci left: 5.111200e-04	ci right 6.099183e-04	k: 503	n:900000
Cons ci ratio: 2.038237e-02	ci left: 3.907308e-02	ci right 3.987877e-02	k: 35527	n:900000
KS ci ratio: 1.012649e-01	ci left: 1.578030e-03	ci right 1.747425e-03	k: 1495	n:900000
ING1   900000 perm   496 sec   (1816 perm/sec)   p_kst 1.661111e-03   p_cons 3.947444e-02   p_joint 5.588889e-04

Joint ci ratio: 1.738732e-01	ci left: 5.097072e-04	ci right 6.078030e-04	k: 507	n:910000
Cons ci ratio: 2.026383e-02	ci left: 3.909853e-02	ci right 3.990001e-02	k: 35943	n:910000
KS ci ratio: 1.004287e-01	ci left: 1.587469e-03	ci right 1.756387e-03	k: 1520	n:910000
ING1   910000 perm   505 sec   (1802 perm/sec)   p_kst 1.670330e-03   p_cons 3.949780e-02   p_joint 5.571429e-04

Joint ci ratio: 1.730239e-01	ci left: 5.093658e-04	ci right 6.068669e-04	k: 512	n:920000
Cons ci ratio: 2.015831e-02	ci left: 3.908234e-02	ci right 3.987926e-02	k: 36321	n:920000
KS ci ratio: 1.001006e-01	ci left: 1.580811e-03	ci right 1.748438e-03	k: 1530	n:920000
ING1   920000 perm   514 sec   (1790 perm/sec)   p_kst 1.663043e-03   p_cons 3.947935e-02   p_joint 5.565217e-04

Joint ci ratio: 1.716901e-01	ci left: 5.121198e-04	ci right 6.093143e-04	k: 520	n:930000
Cons ci ratio: 2.004674e-02	ci left: 3.909540e-02	ci right 3.988812e-02	k: 36726	n:930000
KS ci ratio: 9.964616e-02	ci left: 1.578491e-03	ci right 1.745068e-03	k: 1544	n:930000
ING1   930000 perm   523 sec   (1779 perm/sec)   p_kst 1.660215e-03   p_cons 3.949032e-02   p_joint 5.591398e-04

Joint ci ratio: 1.707099e-01	ci left: 5.127813e-04	ci right 6.094884e-04	k: 526	n:940000
Cons ci ratio: 1.994427e-02	ci left: 3.908066e-02	ci right 3.986899e-02	k: 37105	n:940000
KS ci ratio: 9.910240e-02	ci left: 1.579334e-03	ci right 1.745038e-03	k: 1561	n:940000
ING1   940000 perm   532 sec   (1768 perm/sec)   p_kst 1.660638e-03   p_cons 3.947340e-02   p_joint 5.595745e-04

Joint ci ratio: 1.694286e-01	ci left: 5.154462e-04	ci right 6.118518e-04	k: 534	n:950000
Cons ci ratio: 1.983923e-02	ci left: 3.908196e-02	ci right 3.986612e-02	k: 37499	n:950000
KS ci ratio: 9.853621e-02	ci left: 1.581189e-03	ci right 1.746084e-03	k: 1579	n:950000
ING1   950000 perm   541 sec   (1755 perm/sec)   p_kst 1.662105e-03   p_cons 3.947263e-02   p_joint 5.621053e-04

Joint ci ratio: 1.763237e-01	ci left: 4.692148e-04	ci right 5.609259e-04	k: 493	n:960000
Cons ci ratio: 1.973529e-02	ci left: 3.908531e-02	ci right 3.986538e-02	k: 37895	n:960000
KS ci ratio: 9.804108e-02	ci left: 1.580975e-03	ci right 1.744972e-03	k: 1595	n:960000
ING1   960000 perm   551 sec   (1743 perm/sec)   p_kst 1.661458e-03   p_cons 3.947396e-02   p_joint 5.135417e-04

Joint ci ratio: 1.749128e-01	ci left: 4.722625e-04	ci right 5.637527e-04	k: 501	n:970000
Cons ci ratio: 1.963377e-02	ci left: 3.908553e-02	ci right 3.986155e-02	k: 38288	n:970000
KS ci ratio: 9.737200e-02	ci left: 1.586803e-03	ci right 1.750217e-03	k: 1617	n:970000
ING1   970000 perm   560 sec   (1733 perm/sec)   p_kst 1.667010e-03   p_cons 3.947216e-02   p_joint 5.164948e-04

Joint ci ratio: 1.747392e-01	ci left: 4.684192e-04	ci right 5.590652e-04	k: 502	n:980000
Cons ci ratio: 1.953379e-02	ci left: 3.908576e-02	ci right 3.985778e-02	k: 38681	n:980000
KS ci ratio: 9.686444e-02	ci left: 1.587536e-03	ci right 1.750126e-03	k: 1634	n:980000
ING1   980000 perm   571 sec   (1718 perm/sec)   p_kst 1.667347e-03   p_cons 3.947041e-02   p_joint 5.122449e-04

Joint ci ratio: 1.737062e-01	ci left: 4.694841e-04	ci right 5.597427e-04	k: 508	n:990000
Cons ci ratio: 1.943404e-02	ci left: 3.909101e-02	ci right 3.985916e-02	k: 39079	n:990000
KS ci ratio: 9.654051e-02	ci left: 1.582343e-03	ci right 1.743828e-03	k: 1645	n:990000
ING1   990000 perm   582 sec   (1702 perm/sec)   p_kst 1.661616e-03   p_cons 3.947374e-02   p_joint 5.131313e-04

Joint ci ratio: 1.726913e-01	ci left: 4.705291e-04	ci right 5.604051e-04	k: 514	n:1000000
Cons ci ratio: 1.933860e-02	ci left: 3.908523e-02	ci right 3.984944e-02	k: 39466	n:1000000
KS ci ratio: 9.598799e-02	ci left: 1.585062e-03	ci right 1.745847e-03	k: 1664	n:1000000
ING1   1000000 perm   591 sec   (1691 perm/sec)   p_kst 1.664000e-03   p_cons 3.946600e-02   p_joint 5.140000e-04

Joint ci ratio: 1.721907e-01	ci left: 4.687125e-04	ci right 5.579550e-04	k: 517	n:1010000
Cons ci ratio: 1.924706e-02	ci left: 3.906971e-02	ci right 3.982997e-02	k: 39843	n:1010000
KS ci ratio: 9.550166e-02	ci left: 1.585797e-03	ci right 1.745795e-03	k: 1681	n:1010000
ING1   1010000 perm   601 sec   (1682 perm/sec)   p_kst 1.664356e-03   p_cons 3.944851e-02   p_joint 5.118812e-04

Joint ci ratio: 1.716944e-01	ci left: 4.669318e-04	ci right 5.555525e-04	k: 520	n:1020000
Cons ci ratio: 1.914963e-02	ci left: 3.908280e-02	ci right 3.983942e-02	k: 40249	n:1020000
KS ci ratio: 9.507873e-02	ci left: 1.584605e-03	ci right 1.743736e-03	k: 1696	n:1020000
ING1   1020000 perm   610 sec   (1671 perm/sec)   p_kst 1.662745e-03   p_cons 3.945980e-02   p_joint 5.098039e-04

Joint ci ratio: 1.712023e-01	ci left: 4.651861e-04	ci right 5.531963e-04	k: 523	n:1030000
Cons ci ratio: 1.905367e-02	ci left: 3.909565e-02	ci right 3.984869e-02	k: 40655	n:1030000
KS ci ratio: 9.463368e-02	ci left: 1.584386e-03	ci right 1.742709e-03	k: 1712	n:1030000
ING1   1030000 perm   620 sec   (1661 perm/sec)   p_kst 1.662136e-03   p_cons 3.947087e-02   p_joint 5.077670e-04

Joint ci ratio: 1.702304e-01	ci left: 4.662359e-04	ci right 5.538926e-04	k: 529	n:1040000
Cons ci ratio: 1.896009e-02	ci left: 3.910444e-02	ci right 3.985390e-02	k: 41057	n:1040000
KS ci ratio: 9.411308e-02	ci left: 1.586990e-03	ci right 1.744652e-03	k: 1731	n:1040000
ING1   1040000 perm   630 sec   (1650 perm/sec)   p_kst 1.664423e-03   p_cons 3.947788e-02   p_joint 5.086538e-04

Joint ci ratio: 1.686465e-01	ci left: 4.709156e-04	ci right 5.585446e-04	k: 539	n:1050000
Cons ci ratio: 1.886693e-02	ci left: 3.911685e-02	ci right 3.986283e-02	k: 41463	n:1050000
KS ci ratio: 9.378894e-02	ci left: 1.583036e-03	ci right 1.739734e-03	k: 1743	n:1050000
ING1   1050000 perm   640 sec   (1640 perm/sec)   p_kst 1.660000e-03   p_cons 3.948857e-02   p_joint 5.133333e-04

Joint ci ratio: 1.671059e-01	ci left: 4.755108e-04	ci right 5.631051e-04	k: 549	n:1060000
Cons ci ratio: 1.877280e-02	ci left: 3.913844e-02	ci right 3.988106e-02	k: 41879	n:1060000
KS ci ratio: 9.317627e-02	ci left: 1.589292e-03	ci right 1.745526e-03	k: 1766	n:1060000
ING1   1060000 perm   650 sec   (1630 perm/sec)   p_kst 1.666038e-03   p_cons 3.950849e-02   p_joint 5.179245e-04

Joint ci ratio: 1.662018e-01	ci left: 4.764403e-04	ci right 5.636836e-04	k: 555	n:1070000
Cons ci ratio: 1.868328e-02	ci left: 3.914660e-02	ci right 3.988580e-02	k: 42281	n:1070000
KS ci ratio: 9.278335e-02	ci left: 1.588132e-03	ci right 1.743558e-03	k: 1781	n:1070000
ING1   1070000 perm   661 sec   (1619 perm/sec)   p_kst 1.664486e-03   p_cons 3.951495e-02   p_joint 5.186916e-04

Joint ci ratio: 1.648724e-01	ci left: 4.800170e-04	ci right 5.671425e-04	k: 564	n:1080000
Cons ci ratio: 1.860025e-02	ci left: 3.913342e-02	ci right 3.986905e-02	k: 42660	n:1080000
KS ci ratio: 9.226688e-02	ci left: 1.591517e-03	ci right 1.746360e-03	k: 1801	n:1080000
ING1   1080000 perm   671 sec   (1610 perm/sec)   p_kst 1.667593e-03   p_cons 3.950000e-02   p_joint 5.222222e-04

Joint ci ratio: 1.640038e-01	ci left: 4.808913e-04	ci right 5.676702e-04	k: 570	n:1090000
Cons ci ratio: 1.851295e-02	ci left: 3.914241e-02	ci right 3.987472e-02	k: 43063	n:1090000
KS ci ratio: 9.186000e-02	ci left: 1.591257e-03	ci right 1.745355e-03	k: 1817	n:1090000
ING1   1090000 perm   681 sec   (1600 perm/sec)   p_kst 1.666972e-03   p_cons 3.950734e-02   p_joint 5.229358e-04

Joint ci ratio: 1.630076e-01	ci left: 4.826228e-04	ci right 5.691333e-04	k: 577	n:1100000
Cons ci ratio: 1.843525e-02	ci left: 3.911685e-02	ci right 3.984558e-02	k: 43428	n:1100000
KS ci ratio: 9.143349e-02	ci left: 1.591891e-03	ci right 1.745297e-03	k: 1834	n:1100000
ING1   1100000 perm   692 sec   (1591 perm/sec)   p_kst 1.667273e-03   p_cons 3.948000e-02   p_joint 5.245455e-04

Joint ci ratio: 1.617529e-01	ci left: 4.860536e-04	ci right 5.724432e-04	k: 586	n:1110000
Cons ci ratio: 1.834980e-02	ci left: 3.912763e-02	ci right 3.985315e-02	k: 43833	n:1110000
KS ci ratio: 9.096368e-02	ci left: 1.594277e-03	ci right 1.747081e-03	k: 1853	n:1110000
ING1   1110000 perm   702 sec   (1581 perm/sec)   p_kst 1.669369e-03   p_cons 3.948919e-02   p_joint 5.279279e-04

Joint ci ratio: 1.609324e-01	ci left: 4.868547e-04	ci right 5.729053e-04	k: 592	n:1120000
Cons ci ratio: 1.827714e-02	ci left: 3.909023e-02	ci right 3.981215e-02	k: 44184	n:1120000
KS ci ratio: 9.052524e-02	ci left: 1.595749e-03	ci right 1.747918e-03	k: 1871	n:1120000
ING1   1120000 perm   712 sec   (1572 perm/sec)   p_kst 1.670536e-03   p_cons 3.945000e-02   p_joint 5.285714e-04

Joint ci ratio: 1.607972e-01	ci left: 4.833955e-04	ci right 5.687560e-04	k: 593	n:1130000
Cons ci ratio: 1.819875e-02	ci left: 3.908081e-02	ci right 3.979943e-02	k: 44566	n:1130000
KS ci ratio: 8.992643e-02	ci left: 1.603252e-03	ci right 1.755072e-03	k: 1896	n:1130000
ING1   1130000 perm   723 sec   (1563 perm/sec)   p_kst 1.677876e-03   p_cons 3.943894e-02   p_joint 5.247788e-04

Joint ci ratio: 1.602586e-01	ci left: 4.825230e-04	ci right 5.674166e-04	k: 597	n:1140000
Cons ci ratio: 1.811821e-02	ci left: 3.908466e-02	ci right 3.980014e-02	k: 44963	n:1140000
KS ci ratio: 8.957306e-02	ci left: 1.602051e-03	ci right 1.753130e-03	k: 1911	n:1140000
ING1   1140000 perm   734 sec   (1554 perm/sec)   p_kst 1.676316e-03   p_cons 3.944123e-02   p_joint 5.236842e-04

Joint ci ratio: 1.598583e-01	ci left: 4.808313e-04	ci right 5.651957e-04	k: 600	n:1150000
Cons ci ratio: 1.803686e-02	ci left: 3.909624e-02	ci right 3.980869e-02	k: 45369	n:1150000
KS ci ratio: 8.924703e-02	ci left: 1.600022e-03	ci right 1.750332e-03	k: 1925	n:1150000
ING1   1150000 perm   744 sec   (1545 perm/sec)   p_kst 1.673913e-03   p_cons 3.945130e-02   p_joint 5.217391e-04

Joint ci ratio: 1.240942e-01	ci left: 8.061390e-04	ci right 9.136198e-04	k: 996	n:1160000
Cons ci ratio: 1.792442e-02	ci left: 3.924325e-02	ci right 3.995387e-02	k: 45933	n:1160000
KS ci ratio: 8.892452e-02	ci left: 1.598029e-03	ci right 1.747581e-03	k: 1939	n:1160000
ING1   1160000 perm   755 sec   (1536 perm/sec)   p_kst 1.671552e-03   p_cons 3.959741e-02   p_joint 8.586207e-04

Joint ci ratio: 1.254881e-01	ci left: 7.810318e-04	ci right 8.864217e-04	k: 974	n:1170000
Cons ci ratio: 1.784184e-02	ci left: 3.926947e-02	ci right 3.997726e-02	k: 46358	n:1170000
KS ci ratio: 8.867370e-02	ci left: 1.593563e-03	ci right 1.742255e-03	k: 1950	n:1170000
ING1   1170000 perm   766 sec   (1528 perm/sec)   p_kst 1.666667e-03   p_cons 3.962222e-02   p_joint 8.324786e-04

Joint ci ratio: 1.247860e-01	ci left: 7.834432e-04	ci right 8.885233e-04	k: 985	n:1180000
Cons ci ratio: 1.776356e-02	ci left: 3.928175e-02	ci right 3.998662e-02	k: 46767	n:1180000
KS ci ratio: 8.824497e-02	ci left: 1.595804e-03	ci right 1.743947e-03	k: 1969	n:1180000
ING1   1180000 perm   776 sec   (1520 perm/sec)   p_kst 1.668644e-03   p_cons 3.963305e-02   p_joint 8.347458e-04

Joint ci ratio: 1.240956e-01	ci left: 7.858157e-04	ci right 8.905880e-04	k: 996	n:1190000
Cons ci ratio: 1.769410e-02	ci left: 3.926035e-02	ci right 3.996206e-02	k: 47136	n:1190000
KS ci ratio: 8.786665e-02	ci left: 1.596365e-03	ci right 1.743893e-03	k: 1986	n:1190000
ING1   1190000 perm   787 sec   (1512 perm/sec)   p_kst 1.668908e-03   p_cons 3.961008e-02   p_joint 8.369748e-04

Joint ci ratio: 1.237240e-01	ci left: 7.841122e-04	ci right 8.883214e-04	k: 1002	n:1200000
Cons ci ratio: 1.761677e-02	ci left: 3.927666e-02	ci right 3.997556e-02	k: 47550	n:1200000
KS ci ratio: 8.738403e-02	ci left: 1.600994e-03	ci right 1.748095e-03	k: 2008	n:1200000
ING1   1200000 perm   798 sec   (1505 perm/sec)   p_kst 1.673333e-03   p_cons 3.962500e-02   p_joint 8.350000e-04

Joint ci ratio: 1.231726e-01	ci left: 7.848403e-04	ci right 8.886474e-04	k: 1011	n:1210000
Cons ci ratio: 1.754292e-02	ci left: 3.928201e-02	ci right 3.997804e-02	k: 47951	n:1210000
KS ci ratio: 8.701663e-02	ci left: 1.601505e-03	ci right 1.748004e-03	k: 2025	n:1210000
ING1   1210000 perm   809 sec   (1496 perm/sec)   p_kst 1.673554e-03   p_cons 3.962893e-02   p_joint 8.355372e-04

Joint ci ratio: 1.240969e-01	ci left: 7.664919e-04	ci right 8.686888e-04	k: 996	n:1220000
Cons ci ratio: 1.747244e-02	ci left: 3.927667e-02	ci right 3.996978e-02	k: 48339	n:1220000
KS ci ratio: 8.665383e-02	ci left: 1.602010e-03	ci right 1.747913e-03	k: 2042	n:1220000
ING1   1220000 perm   820 sec   (1488 perm/sec)   p_kst 1.673770e-03   p_cons 3.962213e-02   p_joint 8.163934e-04

Joint ci ratio: 1.236020e-01	ci left: 7.665628e-04	ci right 8.683318e-04	k: 1004	n:1230000
Cons ci ratio: 1.740373e-02	ci left: 3.926737e-02	ci right 3.995756e-02	k: 48722	n:1230000
KS ci ratio: 8.619082e-02	ci left: 1.606486e-03	ci right 1.751975e-03	k: 2064	n:1230000
ING1   1230000 perm   831 sec   (1480 perm/sec)   p_kst 1.678049e-03   p_cons 3.961138e-02   p_joint 8.162602e-04

Joint ci ratio: 1.243476e-01	ci left: 7.510032e-04	ci right 8.513522e-04	k: 992	n:1240000
Cons ci ratio: 1.733361e-02	ci left: 3.926786e-02	ci right 3.995526e-02	k: 49117	n:1240000
KS ci ratio: 8.561196e-02	ci left: 1.615626e-03	ci right 1.760911e-03	k: 2092	n:1240000
ING1   1240000 perm   842 sec   (1472 perm/sec)   p_kst 1.687097e-03   p_cons 3.961048e-02   p_joint 8.000000e-04

Joint ci ratio: 1.244735e-01	ci left: 7.434447e-04	ci right 8.428918e-04	k: 990	n:1250000
Cons ci ratio: 1.726017e-02	ci left: 3.928668e-02	ci right 3.997146e-02	k: 49535	n:1250000
KS ci ratio: 8.534745e-02	ci left: 1.612879e-03	ci right 1.757446e-03	k: 2105	n:1250000
ING1   1250000 perm   854 sec   (1464 perm/sec)   p_kst 1.684000e-03   p_cons 3.962800e-02   p_joint 7.920000e-04

Joint ci ratio: 1.239741e-01	ci left: 7.436963e-04	ci right 8.427486e-04	k: 998	n:1260000
Cons ci ratio: 1.719679e-02	ci left: 3.926489e-02	ci right 3.994675e-02	k: 49902	n:1260000
KS ci ratio: 8.488498e-02	ci left: 1.617944e-03	ci right 1.762140e-03	k: 2128	n:1260000
ING1   1260000 perm   865 sec   (1457 perm/sec)   p_kst 1.688889e-03   p_cons 3.960476e-02   p_joint 7.920635e-04

Joint ci ratio: 1.238505e-01	ci left: 7.393663e-04	ci right 8.377365e-04	k: 1000	n:1270000
Cons ci ratio: 1.713091e-02	ci left: 3.925756e-02	ci right 3.993666e-02	k: 50287	n:1270000
KS ci ratio: 8.468655e-02	ci left: 1.612911e-03	ci right 1.756306e-03	k: 2138	n:1270000
ING1   1270000 perm   877 sec   (1449 perm/sec)   p_kst 1.683465e-03   p_cons 3.959606e-02   p_joint 7.874016e-04

Joint ci ratio: 1.231145e-01	ci left: 7.426755e-04	ci right 8.408560e-04	k: 1012	n:1280000
Cons ci ratio: 1.706561e-02	ci left: 3.925114e-02	ci right 3.992751e-02	k: 50673	n:1280000
KS ci ratio: 8.435201e-02	ci left: 1.613310e-03	ci right 1.756147e-03	k: 2155	n:1280000
ING1   1280000 perm   888 sec   (1441 perm/sec)   p_kst 1.683594e-03   p_cons 3.958828e-02   p_joint 7.906250e-04

Joint ci ratio: 1.288425e-01	ci left: 6.708483e-04	ci right 7.639751e-04	k: 924	n:1290000
Cons ci ratio: 1.699308e-02	ci left: 3.928033e-02	ci right 3.995430e-02	k: 51105	n:1290000
KS ci ratio: 8.394405e-02	ci left: 1.616741e-03	ci right 1.759155e-03	k: 2176	n:1290000
ING1   1290000 perm   900 sec   (1434 perm/sec)   p_kst 1.686822e-03   p_cons 3.961628e-02   p_joint 7.162791e-04

Joint ci ratio: 1.284958e-01	ci left: 6.694103e-04	ci right 7.620683e-04	k: 929	n:1300000
Cons ci ratio: 1.692780e-02	ci left: 3.928073e-02	ci right 3.995209e-02	k: 51500	n:1300000
KS ci ratio: 8.359912e-02	ci left: 1.617860e-03	ci right 1.759759e-03	k: 2194	n:1300000
ING1   1300000 perm   911 sec   (1427 perm/sec)   p_kst 1.687692e-03   p_cons 3.961538e-02   p_joint 7.146154e-04

Joint ci ratio: 1.277424e-01	ci left: 6.724282e-04	ci right 7.649168e-04	k: 940	n:1310000
Cons ci ratio: 1.686005e-02	ci left: 3.929557e-02	ci right 3.996448e-02	k: 51914	n:1310000
KS ci ratio: 8.331499e-02	ci left: 1.616722e-03	ci right 1.758015e-03	k: 2209	n:1310000
ING1   1310000 perm   923 sec   (1420 perm/sec)   p_kst 1.686260e-03   p_cons 3.962901e-02   p_joint 7.175573e-04

Joint ci ratio: 1.270689e-01	ci left: 6.746684e-04	ci right 7.669390e-04	k: 950	n:1320000
Cons ci ratio: 1.679946e-02	ci left: 3.928153e-02	ci right 3.994777e-02	k: 52290	n:1320000
KS ci ratio: 8.288461e-02	ci left: 1.621536e-03	ci right 1.762483e-03	k: 2232	n:1320000
ING1   1320000 perm   934 sec   (1413 perm/sec)   p_kst 1.690909e-03   p_cons 3.961364e-02   p_joint 7.196970e-04

Joint ci ratio: 1.263401e-01	ci left: 6.776043e-04	ci right 7.697052e-04	k: 961	n:1330000
Cons ci ratio: 1.673555e-02	ci left: 3.928567e-02	ci right 3.994942e-02	k: 52690	n:1330000
KS ci ratio: 8.258928e-02	ci left: 1.621125e-03	ci right 1.761510e-03	k: 2248	n:1330000
ING1   1330000 perm   946 sec   (1406 perm/sec)   p_kst 1.690226e-03   p_cons 3.961654e-02   p_joint 7.225564e-04

Joint ci ratio: 1.302612e-01	ci left: 6.313741e-04	ci right 7.200608e-04	k: 904	n:1340000
Cons ci ratio: 1.666941e-02	ci left: 3.930313e-02	ci right 3.996453e-02	k: 53108	n:1340000
KS ci ratio: 8.229708e-02	ci left: 1.620721e-03	ci right 1.760551e-03	k: 2264	n:1340000
ING1   1340000 perm   958 sec   (1399 perm/sec)   p_kst 1.689552e-03   p_cons 3.963284e-02   p_joint 6.746269e-04

Joint ci ratio: 1.299029e-01	ci left: 6.302804e-04	ci right 7.185512e-04	k: 909	n:1350000
Cons ci ratio: 1.661020e-02	ci left: 3.929231e-02	ci right 3.995115e-02	k: 53488	n:1350000
KS ci ratio: 8.195400e-02	ci left: 1.622501e-03	ci right 1.761873e-03	k: 2283	n:1350000
ING1   1350000 perm   970 sec   (1392 perm/sec)   p_kst 1.691111e-03   p_cons 3.962074e-02   p_joint 6.733333e-04

Joint ci ratio: 1.309880e-01	ci left: 6.149762e-04	ci right 7.018790e-04	k: 894	n:1360000
Cons ci ratio: 1.654794e-02	ci left: 3.929849e-02	ci right 3.995494e-02	k: 53891	n:1360000
KS ci ratio: 8.166847e-02	ci left: 1.622095e-03	ci right 1.760923e-03	k: 2299	n:1360000
ING1   1360000 perm   982 sec   (1385 perm/sec)   p_kst 1.690441e-03   p_cons 3.962574e-02   p_joint 6.573529e-04

Joint ci ratio: 1.887900e-01	ci left: 2.849037e-04	ci right 3.449790e-04	k: 430	n:1370000
Cons ci ratio: 1.648100e-02	ci left: 3.932930e-02	ci right 3.998359e-02	k: 54328	n:1370000
KS ci ratio: 8.009710e-02	ci left: 1.675337e-03	ci right 1.815834e-03	k: 2390	n:1370000
ING1   1370000 perm   994 sec   (1378 perm/sec)   p_kst 1.744526e-03   p_cons 3.965547e-02   p_joint 3.138686e-04

Joint ci ratio: 1.883536e-01	ci left: 2.842201e-04	ci right 3.439968e-04	k: 432	n:1380000
Cons ci ratio: 1.641923e-02	ci left: 3.933947e-02	ci right 3.999145e-02	k: 54737	n:1380000
KS ci ratio: 7.966488e-02	ci left: 1.681661e-03	ci right 1.821893e-03	k: 2416	n:1380000
ING1   1380000 perm   1006 sec   (1371 perm/sec)   p_kst 1.750725e-03   p_cons 3.966449e-02   p_joint 3.130435e-04

Joint ci ratio: 1.877044e-01	ci left: 2.842320e-04	ci right 3.437818e-04	k: 435	n:1390000
Cons ci ratio: 1.635769e-02	ci left: 3.935164e-02	ci right 4.000136e-02	k: 55149	n:1390000
KS ci ratio: 7.945163e-02	ci left: 1.678729e-03	ci right 1.818324e-03	k: 2429	n:1390000
ING1   1390000 perm   1018 sec   (1365 perm/sec)   p_kst 1.747482e-03   p_cons 3.967554e-02   p_joint 3.129496e-04

Joint ci ratio: 1.870620e-01	ci left: 2.842441e-04	ci right 3.435694e-04	k: 438	n:1400000
Cons ci ratio: 1.629806e-02	ci left: 3.935795e-02	ci right 4.000538e-02	k: 55553	n:1400000
KS ci ratio: 7.912660e-02	ci left: 1.680741e-03	ci right 1.819905e-03	k: 2449	n:1400000
ING1   1400000 perm   1031 sec   (1358 perm/sec)   p_kst 1.749286e-03   p_cons 3.968071e-02   p_joint 3.128571e-04

Joint ci ratio: 1.860056e-01	ci left: 2.856087e-04	ci right 3.448442e-04	k: 443	n:1410000
Cons ci ratio: 1.623545e-02	ci left: 3.938113e-02	ci right 4.002643e-02	k: 55981	n:1410000
KS ci ratio: 7.888556e-02	ci left: 1.679249e-03	ci right 1.817846e-03	k: 2464	n:1410000
ING1   1410000 perm   1044 sec   (1351 perm/sec)   p_kst 1.747518e-03   p_cons 3.970284e-02   p_joint 3.141844e-04

Joint ci ratio: 1.849669e-01	ci left: 2.869551e-04	ci right 3.461002e-04	k: 448	n:1420000
Cons ci ratio: 1.617879e-02	ci left: 3.937944e-02	ci right 4.002244e-02	k: 56374	n:1420000
KS ci ratio: 7.855157e-02	ci left: 1.681921e-03	ci right 1.820124e-03	k: 2485	n:1420000
ING1   1420000 perm   1056 sec   (1344 perm/sec)   p_kst 1.750000e-03   p_cons 3.970000e-02   p_joint 3.154930e-04

Joint ci ratio: 1.843521e-01	ci left: 2.869493e-04	ci right 3.458747e-04	k: 451	n:1430000
Cons ci ratio: 1.612035e-02	ci left: 3.938892e-02	ci right 4.002973e-02	k: 56783	n:1430000
KS ci ratio: 7.831572e-02	ci left: 1.680443e-03	ci right 1.818091e-03	k: 2500	n:1430000
ING1   1430000 perm   1069 sec   (1338 perm/sec)   p_kst 1.748252e-03   p_cons 3.970839e-02   p_joint 3.153846e-04

Joint ci ratio: 1.835417e-01	ci left: 2.876065e-04	ci right 3.463783e-04	k: 455	n:1440000
Cons ci ratio: 1.606356e-02	ci left: 3.939343e-02	ci right 4.003203e-02	k: 57185	n:1440000
KS ci ratio: 7.805092e-02	ci left: 1.680348e-03	ci right 1.817502e-03	k: 2517	n:1440000
ING1   1440000 perm   1082 sec   (1331 perm/sec)   p_kst 1.747917e-03   p_cons 3.971181e-02   p_joint 3.159722e-04

Joint ci ratio: 1.829409e-01	ci left: 2.875971e-04	ci right 3.461532e-04	k: 458	n:1450000
Cons ci ratio: 1.600896e-02	ci left: 3.939033e-02	ci right 4.002669e-02	k: 57576	n:1450000
KS ci ratio: 7.789659e-02	ci left: 1.675521e-03	ci right 1.811999e-03	k: 2527	n:1450000
ING1   1450000 perm   1094 sec   (1325 perm/sec)   p_kst 1.742759e-03   p_cons 3.970759e-02   p_joint 3.158621e-04

Joint ci ratio: 1.312848e-01	ci left: 5.702038e-04	ci right 6.509766e-04	k: 890	n:1460000
Cons ci ratio: 1.595376e-02	ci left: 3.939272e-02	ci right 4.002691e-02	k: 57975	n:1460000
KS ci ratio: 7.765129e-02	ci left: 1.674791e-03	ci right 1.810760e-03	k: 2543	n:1460000
ING1   1460000 perm   1107 sec   (1319 perm/sec)   p_kst 1.741781e-03   p_cons 3.970890e-02   p_joint 6.095890e-04

Joint ci ratio: 1.305541e-01	ci left: 5.729049e-04	ci right 6.535735e-04	k: 900	n:1470000
Cons ci ratio: 1.589885e-02	ci left: 3.939645e-02	ci right 4.002849e-02	k: 58376	n:1470000
KS ci ratio: 7.742343e-02	ci left: 1.673404e-03	ci right 1.808844e-03	k: 2558	n:1470000
ING1   1470000 perm   1120 sec   (1312 perm/sec)   p_kst 1.740136e-03   p_cons 3.971156e-02   p_joint 6.122449e-04

Joint ci ratio: 1.303374e-01	ci left: 5.709947e-04	ci right 6.512507e-04	k: 903	n:1480000
Cons ci ratio: 1.584240e-02	ci left: 3.941023e-02	ci right 4.004023e-02	k: 58792	n:1480000
KS ci ratio: 7.715255e-02	ci left: 1.674024e-03	ci right 1.809019e-03	k: 2576	n:1480000
ING1   1480000 perm   1134 sec   (1305 perm/sec)   p_kst 1.740541e-03   p_cons 3.972432e-02   p_joint 6.101351e-04

Joint ci ratio: 1.296933e-01	ci left: 5.730064e-04	ci right 6.531164e-04	k: 912	n:1490000
Cons ci ratio: 1.578821e-02	ci left: 3.941580e-02	ci right 4.004371e-02	k: 59196	n:1490000
KS ci ratio: 7.692905e-02	ci left: 1.672662e-03	ci right 1.807139e-03	k: 2591	n:1490000
ING1   1490000 perm   1147 sec   (1299 perm/sec)   p_kst 1.738926e-03   p_cons 3.972886e-02   p_joint 6.120805e-04

Joint ci ratio: 1.302659e-01	ci left: 5.640263e-04	ci right 6.432559e-04	k: 904	n:1500000
Cons ci ratio: 1.573306e-02	ci left: 3.942860e-02	ci right 4.005451e-02	k: 59611	n:1500000
KS ci ratio: 7.673697e-02	ci left: 1.670011e-03	ci right 1.803924e-03	k: 2604	n:1500000
ING1   1500000 perm   1160 sec   (1293 perm/sec)   p_kst 1.736000e-03   p_cons 3.974067e-02   p_joint 6.026667e-04

Joint ci ratio: 1.309923e-01	ci left: 5.538847e-04	ci right 6.321573e-04	k: 894	n:1510000
Cons ci ratio: 1.568175e-02	ci left: 3.942541e-02	ci right 4.004920e-02	k: 60002	n:1510000
KS ci ratio: 7.648780e-02	ci left: 1.669994e-03	ci right 1.803452e-03	k: 2621	n:1510000
ING1   1510000 perm   1174 sec   (1286 perm/sec)   p_kst 1.735762e-03   p_cons 3.973642e-02   p_joint 5.920530e-04

Joint ci ratio: 1.315081e-01	ci left: 5.457865e-04	ci right 6.232422e-04	k: 887	n:1520000
Cons ci ratio: 1.562851e-02	ci left: 3.943406e-02	ci right 4.005585e-02	k: 60411	n:1520000
KS ci ratio: 7.627001e-02	ci left: 1.668687e-03	ci right 1.801644e-03	k: 2636	n:1520000
ING1   1520000 perm   1187 sec   (1281 perm/sec)   p_kst 1.734211e-03   p_cons 3.974408e-02   p_joint 5.835526e-04

Joint ci ratio: 1.312867e-01	ci left: 5.441156e-04	ci right 6.211939e-04	k: 890	n:1530000
Cons ci ratio: 1.557982e-02	ci left: 3.942306e-02	ci right 4.004273e-02	k: 60790	n:1530000
KS ci ratio: 7.601101e-02	ci left: 1.669321e-03	ci right 1.801857e-03	k: 2654	n:1530000
ING1   1530000 perm   1201 sec   (1274 perm/sec)   p_kst 1.734641e-03   p_cons 3.973203e-02   p_joint 5.816993e-04

Joint ci ratio: 1.310663e-01	ci left: 5.424665e-04	ci right 6.191722e-04	k: 893	n:1540000
Cons ci ratio: 1.552761e-02	ci left: 3.943162e-02	ci right 4.004933e-02	k: 61199	n:1540000
KS ci ratio: 7.579726e-02	ci left: 1.668037e-03	ci right 1.800082e-03	k: 2669	n:1540000
ING1   1540000 perm   1214 sec   (1268 perm/sec)   p_kst 1.733117e-03   p_cons 3.973961e-02   p_joint 5.798701e-04

Joint ci ratio: 1.307742e-01	ci left: 5.414628e-04	ci right 6.178427e-04	k: 897	n:1550000
Cons ci ratio: 1.547710e-02	ci left: 3.943429e-02	ci right 4.005001e-02	k: 61599	n:1550000
KS ci ratio: 7.551489e-02	ci left: 1.669935e-03	ci right 1.801616e-03	k: 2689	n:1550000
ING1   1550000 perm   1228 sec   (1262 perm/sec)   p_kst 1.734839e-03   p_cons 3.974129e-02   p_joint 5.787097e-04

Joint ci ratio: 1.388180e-01	ci left: 4.754285e-04	ci right 5.469599e-04	k: 796	n:1560000
Cons ci ratio: 1.542954e-02	ci left: 3.942479e-02	ci right 4.003846e-02	k: 61980	n:1560000
KS ci ratio: 7.530528e-02	ci left: 1.668664e-03	ci right 1.799864e-03	k: 2704	n:1560000
ING1   1560000 perm   1242 sec   (1256 perm/sec)   p_kst 1.733333e-03   p_cons 3.973077e-02   p_joint 5.102564e-04

Joint ci ratio: 1.423464e-01	ci left: 4.484326e-04	ci right 5.177629e-04	k: 757	n:1570000
Cons ci ratio: 1.537947e-02	ci left: 3.943001e-02	ci right 4.004175e-02	k: 62384	n:1570000
KS ci ratio: 7.511124e-02	ci left: 1.666785e-03	ci right 1.797484e-03	k: 2718	n:1570000
ING1   1570000 perm   1256 sec   (1250 perm/sec)   p_kst 1.731210e-03   p_cons 3.973503e-02   p_joint 4.821656e-04

Joint ci ratio: 1.422528e-01	ci left: 4.462048e-04	ci right 5.151413e-04	k: 758	n:1580000
Cons ci ratio: 1.532987e-02	ci left: 3.943517e-02	ci right 4.004500e-02	k: 62788	n:1580000
KS ci ratio: 7.487753e-02	ci left: 1.666793e-03	ci right 1.797069e-03	k: 2735	n:1580000
ING1   1580000 perm   1270 sec   (1245 perm/sec)   p_kst 1.731013e-03   p_cons 3.973924e-02   p_joint 4.797468e-04

Joint ci ratio: 1.457532e-01	ci left: 4.215722e-04	ci right 4.884454e-04	k: 722	n:1590000
Cons ci ratio: 1.528164e-02	ci left: 3.943588e-02	ci right 4.004378e-02	k: 63185	n:1590000
KS ci ratio: 7.467317e-02	ci left: 1.665568e-03	ci right 1.795377e-03	k: 2750	n:1590000
ING1   1590000 perm   1283 sec   (1239 perm/sec)   p_kst 1.729560e-03   p_cons 3.973899e-02   p_joint 4.540881e-04

Joint ci ratio: 1.151528e-01	ci left: 6.820666e-04	ci right 7.660076e-04	k: 1157	n:1600000
Cons ci ratio: 1.523748e-02	ci left: 3.941853e-02	ci right 4.002439e-02	k: 63553	n:1600000
KS ci ratio: 7.433599e-02	ci left: 1.670492e-03	ci right 1.800072e-03	k: 2775	n:1600000
ING1   1600000 perm   1297 sec   (1233 perm/sec)   p_kst 1.734375e-03   p_cons 3.972063e-02   p_joint 7.231250e-04

Joint ci ratio: 1.182058e-01	ci left: 6.422528e-04	ci right 7.235359e-04	k: 1098	n:1610000
Cons ci ratio: 1.518776e-02	ci left: 3.943110e-02	ci right 4.003516e-02	k: 63969	n:1610000
KS ci ratio: 7.406959e-02	ci left: 1.672308e-03	ci right 1.801544e-03	k: 2795	n:1610000
ING1   1610000 perm   1311 sec   (1228 perm/sec)   p_kst 1.736025e-03   p_cons 3.973230e-02   p_joint 6.819876e-04

Joint ci ratio: 1.181523e-01	ci left: 6.388872e-04	ci right 7.197052e-04	k: 1099	n:1620000
Cons ci ratio: 1.514306e-02	ci left: 3.942076e-02	ci right 4.002287e-02	k: 64348	n:1620000
KS ci ratio: 7.387175e-02	ci left: 1.671073e-03	ci right 1.799854e-03	k: 2810	n:1620000
ING1   1620000 perm   1325 sec   (1223 perm/sec)   p_kst 1.734568e-03   p_cons 3.972099e-02   p_joint 6.783951e-04

Joint ci ratio: 1.230642e-01	ci left: 5.837970e-04	ci right 6.609400e-04	k: 1013	n:1630000
Cons ci ratio: 1.509656e-02	ci left: 3.942155e-02	ci right 4.002181e-02	k: 64745	n:1630000
KS ci ratio: 7.371470e-02	ci left: 1.668048e-03	ci right 1.796310e-03	k: 2822	n:1630000
ING1   1630000 perm   1339 sec   (1218 perm/sec)   p_kst 1.731288e-03   p_cons 3.972086e-02   p_joint 6.214724e-04

Joint ci ratio: 1.227017e-01	ci left: 5.837833e-04	ci right 6.606809e-04	k: 1019	n:1640000
Cons ci ratio: 1.505218e-02	ci left: 3.941383e-02	ci right 4.001219e-02	k: 65128	n:1640000
KS ci ratio: 7.351969e-02	ci left: 1.666854e-03	ci right 1.794672e-03	k: 2837	n:1640000
ING1   1640000 perm   1353 sec   (1212 perm/sec)   p_kst 1.729878e-03   p_cons 3.971220e-02   p_joint 6.213415e-04

Joint ci ratio: 1.224619e-01	ci left: 5.825951e-04	ci right 6.591753e-04	k: 1023	n:1650000
Cons ci ratio: 1.500222e-02	ci left: 3.943640e-02	ci right 4.003310e-02	k: 65561	n:1650000
KS ci ratio: 7.335197e-02	ci left: 1.664486e-03	ci right 1.791818e-03	k: 2850	n:1650000
ING1   1650000 perm   1367 sec   (1207 perm/sec)   p_kst 1.727273e-03   p_cons 3.973394e-02   p_joint 6.200000e-04

Joint ci ratio: 1.219863e-01	ci left: 5.837575e-04	ci right 6.601709e-04	k: 1031	n:1660000
Cons ci ratio: 1.495913e-02	ci left: 3.942629e-02	ci right 4.002110e-02	k: 65940	n:1660000
KS ci ratio: 7.315982e-02	ci left: 1.663330e-03	ci right 1.790226e-03	k: 2865	n:1660000
ING1   1660000 perm   1381 sec   (1202 perm/sec)   p_kst 1.725904e-03   p_cons 3.972289e-02   p_joint 6.210843e-04

Joint ci ratio: 1.218684e-01	ci left: 5.814229e-04	ci right 6.574519e-04	k: 1033	n:1670000
Cons ci ratio: 1.491220e-02	ci left: 3.943778e-02	ci right 4.003089e-02	k: 66355	n:1670000
KS ci ratio: 7.294381e-02	ci left: 1.663363e-03	ci right 1.789872e-03	k: 2882	n:1670000
ING1   1670000 perm   1395 sec   (1197 perm/sec)   p_kst 1.725749e-03   p_cons 3.973353e-02   p_joint 6.185629e-04

Joint ci ratio: 1.213414e-01	ci left: 5.831563e-04	ci right 6.590585e-04	k: 1042	n:1680000
Cons ci ratio: 1.486651e-02	ci left: 3.944498e-02	ci right 4.003637e-02	k: 66763	n:1680000
KS ci ratio: 7.265445e-02	ci left: 1.666904e-03	ci right 1.793157e-03	k: 2905	n:1680000
ING1   1680000 perm   1410 sec   (1192 perm/sec)   p_kst 1.729167e-03   p_cons 3.973988e-02   p_joint 6.202381e-04

Joint ci ratio: 1.208786e-01	ci left: 5.842960e-04	ci right 6.600358e-04	k: 1050	n:1690000
Cons ci ratio: 1.482354e-02	ci left: 3.944031e-02	ci right 4.002990e-02	k: 67151	n:1690000
KS ci ratio: 7.244287e-02	ci left: 1.666917e-03	ci right 1.792788e-03	k: 2922	n:1690000
ING1   1690000 perm   1424 sec   (1187 perm/sec)   p_kst 1.728994e-03   p_cons 3.973432e-02   p_joint 6.213018e-04

Joint ci ratio: 1.205351e-01	ci left: 5.842818e-04	ci right 6.597892e-04	k: 1056	n:1700000
Cons ci ratio: 1.478425e-02	ci left: 3.941870e-02	ci right 4.000640e-02	k: 67510	n:1700000
KS ci ratio: 7.220853e-02	ci left: 1.668086e-03	ci right 1.793621e-03	k: 2941	n:1700000
ING1   1700000 perm   1439 sec   (1181 perm/sec)   p_kst 1.730000e-03   p_cons 3.971176e-02   p_joint 6.211765e-04

Joint ci ratio: 1.203077e-01	ci left: 5.831337e-04	ci right 6.583404e-04	k: 1060	n:1710000
Cons ci ratio: 1.474041e-02	ci left: 3.942241e-02	ci right 4.000839e-02	k: 67912	n:1710000
KS ci ratio: 7.197645e-02	ci left: 1.669242e-03	ci right 1.794443e-03	k: 2960	n:1710000
ING1   1710000 perm   1454 sec   (1176 perm/sec)   p_kst 1.730994e-03   p_cons 3.971462e-02   p_joint 6.198830e-04

Joint ci ratio: 1.197446e-01	ci left: 5.853828e-04	ci right 6.605012e-04	k: 1070	n:1720000
Cons ci ratio: 1.469763e-02	ci left: 3.942259e-02	ci right 4.000687e-02	k: 68308	n:1720000
KS ci ratio: 7.178279e-02	ci left: 1.668672e-03	ci right 1.793480e-03	k: 2976	n:1720000
ING1   1720000 perm   1469 sec   (1171 perm/sec)   p_kst 1.730233e-03   p_cons 3.971395e-02   p_joint 6.220930e-04

Joint ci ratio: 1.195217e-01	ci left: 5.842420e-04	ci right 6.590646e-04	k: 1074	n:1730000
Cons ci ratio: 1.465532e-02	ci left: 3.942220e-02	ci right 4.000478e-02	k: 68703	n:1730000
KS ci ratio: 7.156675e-02	ci left: 1.669245e-03	ci right 1.793704e-03	k: 2994	n:1730000
ING1   1730000 perm   1484 sec   (1166 perm/sec)   p_kst 1.730636e-03   p_cons 3.971272e-02   p_joint 6.208092e-04

Joint ci ratio: 1.193000e-01	ci left: 5.831145e-04	ci right 6.576444e-04	k: 1078	n:1740000
Cons ci ratio: 1.461008e-02	ci left: 3.943900e-02	ci right 4.002001e-02	k: 69128	n:1740000
KS ci ratio: 7.132893e-02	ci left: 1.670941e-03	ci right 1.795095e-03	k: 3014	n:1740000
ING1   1740000 perm   1498 sec   (1161 perm/sec)   p_kst 1.732184e-03   p_cons 3.972874e-02   p_joint 6.195402e-04

Joint ci ratio: 1.188055e-01	ci left: 5.847721e-04	ci right 6.591823e-04	k: 1087	n:1750000
Cons ci ratio: 1.456438e-02	ci left: 3.946016e-02	ci right 4.003965e-02	k: 69561	n:1750000
KS ci ratio: 7.114044e-02	ci left: 1.670372e-03	ci right 1.794143e-03	k: 3030	n:1750000
ING1   1750000 perm   1513 sec   (1156 perm/sec)   p_kst 1.731429e-03   p_cons 3.974914e-02   p_joint 6.211429e-04

Joint ci ratio: 1.185878e-01	ci left: 5.836548e-04	ci right 6.577771e-04	k: 1091	n:1760000
Cons ci ratio: 1.452322e-02	ci left: 3.945957e-02	ci right 4.003740e-02	k: 69956	n:1760000
KS ci ratio: 7.096511e-02	ci left: 1.669253e-03	ci right 1.792623e-03	k: 3045	n:1760000
ING1   1760000 perm   1528 sec   (1152 perm/sec)   p_kst 1.730114e-03   p_cons 3.974773e-02   p_joint 6.198864e-04

Joint ci ratio: 1.183172e-01	ci left: 5.830985e-04	ci right 6.569694e-04	k: 1096	n:1770000
Cons ci ratio: 1.448165e-02	ci left: 3.946293e-02	ci right 4.003914e-02	k: 70358	n:1770000
KS ci ratio: 7.076791e-02	ci left: 1.669256e-03	ci right 1.792270e-03	k: 3062	n:1770000
ING1   1770000 perm   1543 sec   (1147 perm/sec)   p_kst 1.729944e-03   p_cons 3.975028e-02   p_joint 6.192090e-04

Joint ci ratio: 1.180486e-01	ci left: 5.825486e-04	ci right 6.561706e-04	k: 1101	n:1780000
Cons ci ratio: 1.444235e-02	ci left: 3.945618e-02	ci right 4.003071e-02	k: 70742	n:1780000
KS ci ratio: 7.056087e-02	ci left: 1.669812e-03	ci right 1.792492e-03	k: 3080	n:1780000
ING1   1780000 perm   1558 sec   (1142 perm/sec)   p_kst 1.730337e-03   p_cons 3.974270e-02   p_joint 6.185393e-04

Joint ci ratio: 1.178883e-01	ci left: 5.809206e-04	ci right 6.542303e-04	k: 1104	n:1790000
Cons ci ratio: 1.440369e-02	ci left: 3.944783e-02	ci right 4.002070e-02	k: 71123	n:1790000
KS ci ratio: 7.037839e-02	ci left: 1.669265e-03	ci right 1.791574e-03	k: 3096	n:1790000
ING1   1790000 perm   1573 sec   (1138 perm/sec)   p_kst 1.729609e-03   p_cons 3.973352e-02   p_joint 6.167598e-04

Joint ci ratio: 1.176756e-01	ci left: 5.798500e-04	ci right 6.528833e-04	k: 1108	n:1800000
Cons ci ratio: 1.436230e-02	ci left: 3.945564e-02	ci right 4.002695e-02	k: 71533	n:1800000
KS ci ratio: 7.025386e-02	ci left: 1.665995e-03	ci right 1.787840e-03	k: 3107	n:1800000
ING1   1800000 perm   1589 sec   (1133 perm/sec)   p_kst 1.726111e-03   p_cons 3.974056e-02   p_joint 6.155556e-04

Joint ci ratio: 1.172534e-01	ci left: 5.809365e-04	ci right 6.538259e-04	k: 1116	n:1810000
Cons ci ratio: 1.432406e-02	ci left: 3.944849e-02	ci right 4.001817e-02	k: 71916	n:1810000
KS ci ratio: 7.008498e-02	ci left: 1.664932e-03	ci right 1.786395e-03	k: 3122	n:1810000
ING1   1810000 perm   1604 sec   (1128 perm/sec)   p_kst 1.724862e-03   p_cons 3.973260e-02   p_joint 6.165746e-04

Joint ci ratio: 1.174114e-01	ci left: 5.761444e-04	ci right 6.485369e-04	k: 1113	n:1820000
Cons ci ratio: 1.428479e-02	ci left: 3.944855e-02	ci right 4.001665e-02	k: 72312	n:1820000
KS ci ratio: 6.988386e-02	ci left: 1.665501e-03	ci right 1.786643e-03	k: 3140	n:1820000
ING1   1820000 perm   1620 sec   (1124 perm/sec)   p_kst 1.725275e-03   p_cons 3.973187e-02   p_joint 6.115385e-04

Joint ci ratio: 1.170965e-01	ci left: 5.761786e-04	ci right 6.483678e-04	k: 1119	n:1830000
Cons ci ratio: 1.424911e-02	ci left: 3.943118e-02	ci right 3.999760e-02	k: 72676	n:1830000
KS ci ratio: 6.969552e-02	ci left: 1.665528e-03	ci right 1.786331e-03	k: 3157	n:1830000
ING1   1830000 perm   1635 sec   (1119 perm/sec)   p_kst 1.725137e-03   p_cons 3.971366e-02   p_joint 6.114754e-04

Joint ci ratio: 1.169401e-01	ci left: 5.746299e-04	ci right 6.465222e-04	k: 1122	n:1840000
Cons ci ratio: 1.421025e-02	ci left: 3.943241e-02	ci right 3.999730e-02	k: 73074	n:1840000
KS ci ratio: 6.949772e-02	ci left: 1.666088e-03	ci right 1.786576e-03	k: 3175	n:1840000
ING1   1840000 perm   1651 sec   (1115 perm/sec)   p_kst 1.725543e-03   p_cons 3.971413e-02   p_joint 6.097826e-04

Joint ci ratio: 1.165257e-01	ci left: 5.757219e-04	ci right 6.474780e-04	k: 1130	n:1850000
Cons ci ratio: 1.417733e-02	ci left: 3.940347e-02	ci right 3.996662e-02	k: 73416	n:1850000
KS ci ratio: 6.934511e-02	ci left: 1.664518e-03	ci right 1.784618e-03	k: 3189	n:1850000
ING1   1850000 perm   1667 sec   (1110 perm/sec)   p_kst 1.723784e-03   p_cons 3.968432e-02   p_joint 6.108108e-04

Joint ci ratio: 1.163203e-01	ci left: 5.747145e-04	ci right 6.462101e-04	k: 1134	n:1860000
Cons ci ratio: 1.413547e-02	ci left: 3.942413e-02	ci right 3.998590e-02	k: 73850	n:1860000
KS ci ratio: 6.916108e-02	ci left: 1.664551e-03	ci right 1.784321e-03	k: 3206	n:1860000
ING1   1860000 perm   1682 sec   (1106 perm/sec)   p_kst 1.723656e-03   p_cons 3.970430e-02   p_joint 6.096774e-04

Joint ci ratio: 1.160141e-01	ci left: 5.747565e-04	ci right 6.460562e-04	k: 1140	n:1870000
Cons ci ratio: 1.409743e-02	ci left: 3.942592e-02	ci right 3.998620e-02	k: 74249	n:1870000
KS ci ratio: 6.901067e-02	ci left: 1.663007e-03	ci right 1.782395e-03	k: 3220	n:1870000
ING1   1870000 perm   1698 sec   (1101 perm/sec)   p_kst 1.721925e-03   p_cons 3.970535e-02   p_joint 6.096257e-04

Joint ci ratio: 1.156598e-01	ci left: 5.753148e-04	ci right 6.464509e-04	k: 1147	n:1880000
Cons ci ratio: 1.406028e-02	ci left: 3.942452e-02	ci right 3.998328e-02	k: 74642	n:1880000
KS ci ratio: 6.883993e-02	ci left: 1.662525e-03	ci right 1.781572e-03	k: 3236	n:1880000
ING1   1880000 perm   1714 sec   (1097 perm/sec)   p_kst 1.721277e-03   p_cons 3.970319e-02   p_joint 6.101064e-04

Joint ci ratio: 1.154589e-01	ci left: 5.743260e-04	ci right 6.452081e-04	k: 1151	n:1890000
Cons ci ratio: 1.402372e-02	ci left: 3.942155e-02	ci right 3.997881e-02	k: 75032	n:1890000
KS ci ratio: 6.858601e-02	ci left: 1.666209e-03	ci right 1.785062e-03	k: 3260	n:1890000
ING1   1890000 perm   1730 sec   (1092 perm/sec)   p_kst 1.724868e-03   p_cons 3.969947e-02   p_joint 6.089947e-04

Joint ci ratio: 1.151594e-01	ci left: 5.743701e-04	ci right 6.450612e-04	k: 1157	n:1900000
Cons ci ratio: 1.398706e-02	ci left: 3.942071e-02	ci right 3.997649e-02	k: 75426	n:1900000
KS ci ratio: 6.847074e-02	ci left: 1.663130e-03	ci right 1.781555e-03	k: 3271	n:1900000
ING1   1900000 perm   1746 sec   (1088 perm/sec)   p_kst 1.721579e-03   p_cons 3.969789e-02   p_joint 6.089474e-04

Joint ci ratio: 1.149611e-01	ci left: 5.733969e-04	ci right 6.438384e-04	k: 1161	n:1910000
Cons ci ratio: 1.395106e-02	ci left: 3.941779e-02	ci right 3.997209e-02	k: 75816	n:1910000
KS ci ratio: 6.830397e-02	ci left: 1.662656e-03	ci right 1.780748e-03	k: 3287	n:1910000
ING1   1910000 perm   1762 sec   (1084 perm/sec)   p_kst 1.720942e-03   p_cons 3.969424e-02   p_joint 6.078534e-04

Joint ci ratio: 1.148130e-01	ci left: 5.719280e-04	ci right 6.420925e-04	k: 1164	n:1920000
Cons ci ratio: 1.391601e-02	ci left: 3.941127e-02	ci right 3.996407e-02	k: 76199	n:1920000
KS ci ratio: 6.815907e-02	ci left: 1.661163e-03	ci right 1.778889e-03	k: 3301	n:1920000
ING1   1920000 perm   1778 sec   (1080 perm/sec)   p_kst 1.719271e-03   p_cons 3.968698e-02   p_joint 6.062500e-04

Joint ci ratio: 1.214045e-01	ci left: 5.071143e-04	ci right 5.731558e-04	k: 1041	n:1930000
Cons ci ratio: 1.387820e-02	ci left: 3.942135e-02	ci right 3.997278e-02	k: 76614	n:1930000
KS ci ratio: 6.802537e-02	ci left: 1.659177e-03	ci right 1.776523e-03	k: 3314	n:1930000
ING1   1930000 perm   1794 sec   (1076 perm/sec)   p_kst 1.717098e-03   p_cons 3.969637e-02   p_joint 5.393782e-04

Joint ci ratio: 1.209411e-01	ci left: 5.084991e-04	ci right 5.744500e-04	k: 1049	n:1940000
Cons ci ratio: 1.384276e-02	ci left: 3.942002e-02	ci right 3.997001e-02	k: 77007	n:1940000
KS ci ratio: 6.779050e-02	ci left: 1.662279e-03	ci right 1.779422e-03	k: 3337	n:1940000
ING1   1940000 perm   1811 sec   (1071 perm/sec)   p_kst 1.720103e-03   p_cons 3.969433e-02   p_joint 5.407216e-04

Joint ci ratio: 1.027996e-01	ci left: 7.068168e-04	ci right 7.839092e-04	k: 1452	n:1950000
Cons ci ratio: 1.381260e-02	ci left: 3.939111e-02	ci right 3.993949e-02	k: 77346	n:1950000
KS ci ratio: 6.763873e-02	ci left: 1.661317e-03	ci right 1.778120e-03	k: 3352	n:1950000
ING1   1950000 perm   1828 sec   (1067 perm/sec)   p_kst 1.718974e-03   p_cons 3.966462e-02   p_joint 7.446154e-04

Joint ci ratio: 1.030841e-01	ci left: 6.992339e-04	ci right 7.757231e-04	k: 1444	n:1960000
Cons ci ratio: 1.377646e-02	ci left: 3.939656e-02	ci right 3.994357e-02	k: 77752	n:1960000
KS ci ratio: 6.748798e-02	ci left: 1.660364e-03	ci right 1.776830e-03	k: 3367	n:1960000
ING1   1960000 perm   1844 sec   (1063 perm/sec)   p_kst 1.717857e-03   p_cons 3.966939e-02   p_joint 7.367347e-04

Joint ci ratio: 1.029063e-01	ci left: 6.981571e-04	ci right 7.743889e-04	k: 1449	n:1970000
Cons ci ratio: 1.373968e-02	ci left: 3.940702e-02	ci right 3.995271e-02	k: 78168	n:1970000
KS ci ratio: 6.728844e-02	ci left: 1.661917e-03	ci right 1.778134e-03	k: 3387	n:1970000
ING1   1970000 perm   1860 sec   (1059 perm/sec)   p_kst 1.719289e-03   p_cons 3.967919e-02   p_joint 7.355330e-04

Joint ci ratio: 1.024129e-01	ci left: 7.015203e-04	ci right 7.777300e-04	k: 1463	n:1980000
Cons ci ratio: 1.370792e-02	ci left: 3.939120e-02	ci right 3.993540e-02	k: 78532	n:1980000
KS ci ratio: 6.713014e-02	ci left: 1.661469e-03	ci right 1.777370e-03	k: 3403	n:1980000
ING1   1980000 perm   1877 sec   (1055 perm/sec)   p_kst 1.718687e-03   p_cons 3.966263e-02   p_joint 7.388889e-04

Joint ci ratio: 1.022037e-01	ci left: 7.009330e-04	ci right 7.769140e-04	k: 1469	n:1990000
Cons ci ratio: 1.367232e-02	ci left: 3.939808e-02	ci right 3.994095e-02	k: 78941	n:1990000
KS ci ratio: 6.688484e-02	ci left: 1.665472e-03	ci right 1.781212e-03	k: 3428	n:1990000
ING1   1990000 perm   1894 sec   (1051 perm/sec)   p_kst 1.722613e-03   p_cons 3.966884e-02   p_joint 7.381910e-04

Joint ci ratio: 1.020304e-01	ci left: 6.998645e-04	ci right 7.755933e-04	k: 1474	n:2000000
Cons ci ratio: 1.363798e-02	ci left: 3.939941e-02	ci right 3.994092e-02	k: 79339	n:2000000
KS ci ratio: 6.673907e-02	ci left: 1.664520e-03	ci right 1.779931e-03	k: 3443	n:2000000
ING1   2000000 perm   1911 sec   (1047 perm/sec)   p_kst 1.721500e-03   p_cons 3.966950e-02   p_joint 7.370000e-04

Joint ci ratio: 1.018236e-01	ci left: 6.992915e-04	ci right 7.747957e-04	k: 1480	n:2010000
Cons ci ratio: 1.360372e-02	ci left: 3.940172e-02	ci right 3.994189e-02	k: 79739	n:2010000
KS ci ratio: 6.654608e-02	ci left: 1.666023e-03	ci right 1.781191e-03	k: 3463	n:2010000
ING1   2010000 perm   1928 sec   (1043 perm/sec)   p_kst 1.722886e-03   p_cons 3.967114e-02   p_joint 7.363184e-04

Joint ci ratio: 1.015156e-01	ci left: 7.001718e-04	ci right 7.755288e-04	k: 1489	n:2020000
Cons ci ratio: 1.357201e-02	ci left: 3.939118e-02	ci right 3.992994e-02	k: 80113	n:2020000
KS ci ratio: 6.644077e-02	ci left: 1.663130e-03	ci right 1.777910e-03	k: 3474	n:2020000
ING1   2020000 perm   1945 sec   (1039 perm/sec)   p_kst 1.719802e-03   p_cons 3.965990e-02   p_joint 7.371287e-04

Joint ci ratio: 1.024139e-01	ci left: 6.842412e-04	ci right 7.585744e-04	k: 1463	n:2030000
Cons ci ratio: 1.354105e-02	ci left: 3.937780e-02	ci right 3.991514e-02	k: 80481	n:2030000
KS ci ratio: 6.629787e-02	ci left: 1.662204e-03	ci right 1.776663e-03	k: 3489	n:2030000
ING1   2030000 perm   1962 sec   (1035 perm/sec)   p_kst 1.718719e-03   p_cons 3.964581e-02   p_joint 7.206897e-04

Joint ci ratio: 1.019620e-01	ci left: 6.870968e-04	ci right 7.613912e-04	k: 1476	n:2040000
Cons ci ratio: 1.350838e-02	ci left: 3.937530e-02	ci right 3.991130e-02	k: 80871	n:2040000
KS ci ratio: 6.608982e-02	ci left: 1.664662e-03	ci right 1.778917e-03	k: 3511	n:2040000
ING1   2040000 perm   1979 sec   (1031 perm/sec)   p_kst 1.721078e-03   p_cons 3.964265e-02   p_joint 7.235294e-04

Joint ci ratio: 1.018243e-01	ci left: 6.856466e-04	ci right 7.596781e-04	k: 1480	n:2050000
Cons ci ratio: 1.347612e-02	ci left: 3.937186e-02	ci right 3.990652e-02	k: 81259	n:2050000
KS ci ratio: 6.597728e-02	ci left: 1.662298e-03	ci right 1.776190e-03	k: 3523	n:2050000
ING1   2050000 perm   1996 sec   (1027 perm/sec)   p_kst 1.718537e-03   p_cons 3.963854e-02   p_joint 7.219512e-04

Joint ci ratio: 1.016187e-01	ci left: 6.851567e-04	ci right 7.589770e-04	k: 1486	n:2060000
Cons ci ratio: 1.344315e-02	ci left: 3.937377e-02	ci right 3.990714e-02	k: 81658	n:2060000
KS ci ratio: 6.588398e-02	ci left: 1.659003e-03	ci right 1.772502e-03	k: 3533	n:2060000
ING1   2060000 perm   2013 sec   (1023 perm/sec)   p_kst 1.715049e-03   p_cons 3.963981e-02   p_joint 7.213592e-04

Joint ci ratio: 1.016873e-01	ci left: 6.809051e-04	ci right 7.543198e-04	k: 1484	n:2070000
Cons ci ratio: 1.341203e-02	ci left: 3.936652e-02	ci right 3.989854e-02	k: 82038	n:2070000
KS ci ratio: 6.574464e-02	ci left: 1.658116e-03	ci right 1.771305e-03	k: 3548	n:2070000
ING1   2070000 perm   2031 sec   (1019 perm/sec)   p_kst 1.714010e-03   p_cons 3.963188e-02   p_joint 7.169082e-04

Joint ci ratio: 1.015166e-01	ci left: 6.799742e-04	ci right 7.531582e-04	k: 1489	n:2080000
Cons ci ratio: 1.338308e-02	ci left: 3.934831e-02	ci right 3.987893e-02	k: 82395	n:2080000
KS ci ratio: 6.560618e-02	ci left: 1.657237e-03	ci right 1.770119e-03	k: 3563	n:2080000
ING1   2080000 perm   2049 sec   (1015 perm/sec)   p_kst 1.712981e-03   p_cons 3.961298e-02   p_joint 7.158654e-04

Joint ci ratio: 1.012790e-01	ci left: 6.799851e-04	ci right 7.529888e-04	k: 1496	n:2090000
Cons ci ratio: 1.334952e-02	ci left: 3.935747e-02	ci right 3.988687e-02	k: 82809	n:2090000
KS ci ratio: 6.547775e-02	ci left: 1.655897e-03	ci right 1.768458e-03	k: 3577	n:2090000
ING1   2090000 perm   2067 sec   (1011 perm/sec)   p_kst 1.711483e-03   p_cons 3.962153e-02   p_joint 7.157895e-04

Joint ci ratio: 1.010431e-01	ci left: 6.799961e-04	ci right 7.528207e-04	k: 1503	n:2100000
Cons ci ratio: 1.331980e-02	ci left: 3.934613e-02	ci right 3.987419e-02	k: 83180	n:2100000
KS ci ratio: 6.535007e-02	ci left: 1.654569e-03	ci right 1.766812e-03	k: 3591	n:2100000
ING1   2100000 perm   2084 sec   (1008 perm/sec)   p_kst 1.710000e-03   p_cons 3.960952e-02   p_joint 7.157143e-04

Joint ci ratio: 1.008756e-01	ci left: 6.790832e-04	ci right 7.516824e-04	k: 1508	n:2110000
Cons ci ratio: 1.328779e-02	ci left: 3.934907e-02	ci right 3.987589e-02	k: 83581	n:2110000
KS ci ratio: 6.526848e-02	ci left: 1.650923e-03	ci right 1.762774e-03	k: 3600	n:2110000
ING1   2110000 perm   2102 sec   (1004 perm/sec)   p_kst 1.706161e-03   p_cons 3.961185e-02   p_joint 7.146919e-04

Joint ci ratio: 1.012457e-01	ci left: 6.708223e-04	ci right 7.428171e-04	k: 1497	n:2120000
Cons ci ratio: 1.325783e-02	ci left: 3.934164e-02	ci right 3.986717e-02	k: 83960	n:2120000
KS ci ratio: 6.506994e-02	ci left: 1.653344e-03	ci right 1.765005e-03	k: 3622	n:2120000
ING1   2120000 perm   2120 sec   (1000 perm/sec)   p_kst 1.708491e-03   p_cons 3.960377e-02   p_joint 7.061321e-04

Joint ci ratio: 1.011783e-01	ci left: 6.685880e-04	ci right 7.402925e-04	k: 1499	n:2130000
Cons ci ratio: 1.322855e-02	ci left: 3.933147e-02	ci right 3.985569e-02	k: 84333	n:2130000
KS ci ratio: 6.491781e-02	ci left: 1.653433e-03	ci right 1.764830e-03	k: 3639	n:2130000
ING1   2130000 perm   2138 sec   (996 perm/sec)   p_kst 1.708451e-03   p_cons 3.959296e-02   p_joint 7.037559e-04

Joint ci ratio: 1.009766e-01	ci left: 6.681966e-04	ci right 7.397077e-04	k: 1505	n:2140000
Cons ci ratio: 1.319890e-02	ci left: 3.932466e-02	ci right 3.984761e-02	k: 84713	n:2140000
KS ci ratio: 6.474015e-02	ci left: 1.654901e-03	ci right 1.766080e-03	k: 3659	n:2140000
ING1   2140000 perm   2156 sec   (993 perm/sec)   p_kst 1.709813e-03   p_cons 3.958551e-02   p_joint 7.032710e-04

Joint ci ratio: 1.031590e-01	ci left: 6.365338e-04	ci right 7.062179e-04	k: 1442	n:2150000
Cons ci ratio: 1.316695e-02	ci left: 3.933229e-02	ci right 3.985406e-02	k: 85124	n:2150000
KS ci ratio: 6.459912e-02	ci left: 1.654526e-03	ci right 1.765428e-03	k: 3675	n:2150000
ING1   2150000 perm   2174 sec   (989 perm/sec)   p_kst 1.709302e-03   p_cons 3.959256e-02   p_joint 6.706977e-04

Joint ci ratio: 1.029097e-01	ci left: 6.367441e-04	ci right 7.062726e-04	k: 1449	n:2160000
Cons ci ratio: 1.313707e-02	ci left: 3.932924e-02	ci right 3.984978e-02	k: 85512	n:2160000
KS ci ratio: 6.449402e-02	ci left: 1.652332e-03	ci right 1.762900e-03	k: 3687	n:2160000
ING1   2160000 perm   2192 sec   (986 perm/sec)   p_kst 1.706944e-03   p_cons 3.958889e-02   p_joint 6.708333e-04

Joint ci ratio: 1.026269e-01	ci left: 6.374017e-04	ci right 7.067992e-04	k: 1457	n:2170000
Cons ci ratio: 1.310818e-02	ci left: 3.932162e-02	ci right 3.984090e-02	k: 85890	n:2170000
KS ci ratio: 6.431981e-02	ci left: 1.653785e-03	ci right 1.764141e-03	k: 3707	n:2170000
ING1   2170000 perm   2210 sec   (982 perm/sec)   p_kst 1.708295e-03   p_cons 3.958065e-02   p_joint 6.714286e-04

Joint ci ratio: 1.024514e-01	ci left: 6.367126e-04	ci right 7.059094e-04	k: 1462	n:2180000
Cons ci ratio: 1.307925e-02	ci left: 3.931544e-02	ci right 3.983349e-02	k: 86271	n:2180000
KS ci ratio: 6.414700e-02	ci left: 1.655226e-03	ci right 1.765370e-03	k: 3727	n:2180000
ING1   2180000 perm   2227 sec   (979 perm/sec)   p_kst 1.709633e-03   p_cons 3.957385e-02   p_joint 6.706422e-04

Joint ci ratio: 1.022072e-01	ci left: 6.369198e-04	ci right 7.059642e-04	k: 1469	n:2190000
Cons ci ratio: 1.304863e-02	ci left: 3.932025e-02	ci right 3.983714e-02	k: 86676	n:2190000
KS ci ratio: 6.400980e-02	ci left: 1.654857e-03	ci right 1.764732e-03	k: 3743	n:2190000
ING1   2190000 perm   2245 sec   (975 perm/sec)   p_kst 1.709132e-03   p_cons 3.957808e-02   p_joint 6.707763e-04

Joint ci ratio: 1.018268e-01	ci left: 6.388971e-04	ci right 7.078827e-04	k: 1480	n:2200000
Cons ci ratio: 1.301970e-02	ci left: 3.931640e-02	ci right 3.983209e-02	k: 87062	n:2200000
KS ci ratio: 6.387348e-02	ci left: 1.654491e-03	ci right 1.764100e-03	k: 3759	n:2200000
ING1   2200000 perm   2263 sec   (972 perm/sec)   p_kst 1.708636e-03   p_cons 3.957364e-02   p_joint 6.727273e-04

Joint ci ratio: 1.016212e-01	ci left: 6.386521e-04	ci right 7.074636e-04	k: 1486	n:2210000
Cons ci ratio: 1.298888e-02	ci left: 3.932477e-02	ci right 3.983933e-02	k: 87475	n:2210000
KS ci ratio: 6.373803e-02	ci left: 1.654129e-03	ci right 1.763473e-03	k: 3775	n:2210000
ING1   2210000 perm   2282 sec   (969 perm/sec)   p_kst 1.708145e-03   p_cons 3.958145e-02   p_joint 6.723982e-04

Joint ci ratio: 1.013150e-01	ci left: 6.397264e-04	ci right 7.084337e-04	k: 1495	n:2220000
Cons ci ratio: 1.296088e-02	ci left: 3.931780e-02	ci right 3.983115e-02	k: 87854	n:2220000
KS ci ratio: 6.358664e-02	ci left: 1.654657e-03	ci right 1.763766e-03	k: 3793	n:2220000
ING1   2220000 perm   2300 sec   (965 perm/sec)   p_kst 1.708559e-03   p_cons 3.957387e-02   p_joint 6.734234e-04

Joint ci ratio: 1.013152e-01	ci left: 6.368577e-04	ci right 7.052570e-04	k: 1495	n:2230000
Cons ci ratio: 1.293582e-02	ci left: 3.929479e-02	ci right 3.980685e-02	k: 88197	n:2230000
KS ci ratio: 6.342799e-02	ci left: 1.655622e-03	ci right 1.764512e-03	k: 3812	n:2230000
ING1   2230000 perm   2318 sec   (962 perm/sec)   p_kst 1.709417e-03   p_cons 3.955022e-02   p_joint 6.704036e-04

Joint ci ratio: 1.010790e-01	ci left: 6.370605e-04	ci right 7.053126e-04	k: 1502	n:2240000
Cons ci ratio: 1.290884e-02	ci left: 3.928401e-02	ci right 3.979486e-02	k: 88567	n:2240000
KS ci ratio: 6.333678e-02	ci left: 1.653064e-03	ci right 1.761624e-03	k: 3823	n:2240000
ING1   2240000 perm   2337 sec   (959 perm/sec)   p_kst 1.706696e-03   p_cons 3.953884e-02   p_joint 6.705357e-04

Joint ci ratio: 1.011802e-01	ci left: 6.329294e-04	ci right 7.008109e-04	k: 1499	n:2250000
Cons ci ratio: 1.288234e-02	ci left: 3.927156e-02	ci right 3.978118e-02	k: 88933	n:2250000
KS ci ratio: 6.320471e-02	ci left: 1.652716e-03	ci right 1.761018e-03	k: 3839	n:2250000
ING1   2250000 perm   2356 sec   (955 perm/sec)   p_kst 1.706222e-03   p_cons 3.952578e-02   p_joint 6.662222e-04

Joint ci ratio: 1.009449e-01	ci left: 6.331479e-04	ci right 7.008855e-04	k: 1506	n:2260000
Cons ci ratio: 1.285390e-02	ci left: 3.927157e-02	ci right 3.978006e-02	k: 89327	n:2260000
KS ci ratio: 6.308165e-02	ci left: 1.651935e-03	ci right 1.759968e-03	k: 3854	n:2260000
ING1   2260000 perm   2375 sec   (952 perm/sec)   p_kst 1.705310e-03   p_cons 3.952522e-02   p_joint 6.663717e-04

Joint ci ratio: 1.008113e-01	ci left: 6.320763e-04	ci right 6.996045e-04	k: 1510	n:2270000
Cons ci ratio: 1.282469e-02	ci left: 3.927728e-02	ci right 3.978468e-02	k: 89734	n:2270000
KS ci ratio: 6.299193e-02	ci left: 1.649427e-03	ci right 1.757137e-03	k: 3865	n:2270000
ING1   2270000 perm   2393 sec   (949 perm/sec)   p_kst 1.702643e-03   p_cons 3.953040e-02   p_joint 6.651982e-04

Joint ci ratio: 1.004462e-01	ci left: 6.340073e-04	ci right 7.014820e-04	k: 1521	n:2280000
Cons ci ratio: 1.279670e-02	ci left: 3.927683e-02	ci right 3.978311e-02	k: 90127	n:2280000
KS ci ratio: 6.285389e-02	ci left: 1.649532e-03	ci right 1.757003e-03	k: 3882	n:2280000
ING1   2280000 perm   2412 sec   (945 perm/sec)   p_kst 1.702632e-03   p_cons 3.952939e-02   p_joint 6.671053e-04

Joint ci ratio: 1.002817e-01	ci left: 6.333673e-04	ci right 7.006569e-04	k: 1526	n:2290000
Cons ci ratio: 1.276985e-02	ci left: 3.927073e-02	ci right 3.977586e-02	k: 90507	n:2290000
KS ci ratio: 6.278936e-02	ci left: 1.645767e-03	ci right 1.752879e-03	k: 3890	n:2290000
ING1   2290000 perm   2431 sec   (942 perm/sec)   p_kst 1.698690e-03   p_cons 3.952271e-02   p_joint 6.663755e-04

Joint ci ratio: 1.000526e-01	ci left: 6.335807e-04	ci right 7.007303e-04	k: 1533	n:2300000
Cons ci ratio: 1.274339e-02	ci left: 3.926337e-02	ci right 3.976735e-02	k: 90884	n:2300000
KS ci ratio: 6.265265e-02	ci left: 1.645887e-03	ci right 1.752765e-03	k: 3907	n:2300000
ING1   2300000 perm   2450 sec   (939 perm/sec)   p_kst 1.698696e-03   p_cons 3.951478e-02   p_joint 6.665217e-04

Joint ci ratio: 1.026290e-01	ci left: 5.987707e-04	ci right 6.639636e-04	k: 1457	n:2310000
Cons ci ratio: 1.271594e-02	ci left: 3.926299e-02	ci right 3.976587e-02	k: 91277	n:2310000
KS ci ratio: 6.256474e-02	ci left: 1.643449e-03	ci right 1.750014e-03	k: 3918	n:2310000
ING1   2310000 perm   2469 sec   (936 perm/sec)   p_kst 1.696104e-03   p_cons 3.951385e-02   p_joint 6.307359e-04

Joint ci ratio: 1.028057e-01	ci left: 5.940899e-04	ci right 6.588913e-04	k: 1452	n:2320000
Cons ci ratio: 1.268895e-02	ci left: 3.926089e-02	ci right 3.976267e-02	k: 91666	n:2320000
KS ci ratio: 6.240566e-02	ci left: 1.644851e-03	ci right 1.751226e-03	k: 3938	n:2320000
ING1   2320000 perm   2488 sec   (932 perm/sec)   p_kst 1.697414e-03   p_cons 3.951121e-02   p_joint 6.258621e-04

Joint ci ratio: 1.025941e-01	ci left: 5.940491e-04	ci right 6.587046e-04	k: 1458	n:2330000
Cons ci ratio: 1.266306e-02	ci left: 3.925325e-02	ci right 3.975390e-02	k: 92042	n:2330000
KS ci ratio: 6.225567e-02	ci left: 1.645819e-03	ci right 1.751992e-03	k: 3957	n:2330000
ING1   2330000 perm   2507 sec   (929 perm/sec)   p_kst 1.698283e-03   p_cons 3.950300e-02   p_joint 6.257511e-04

Joint ci ratio: 1.022442e-01	ci left: 5.956745e-04	ci right 6.602725e-04	k: 1468	n:2340000
Cons ci ratio: 1.263725e-02	ci left: 3.924610e-02	ci right 3.974564e-02	k: 92419	n:2340000
KS ci ratio: 6.206768e-02	ci left: 1.648883e-03	ci right 1.754920e-03	k: 3981	n:2340000
ING1   2340000 perm   2527 sec   (926 perm/sec)   p_kst 1.701282e-03   p_cons 3.949530e-02   p_joint 6.273504e-04

Joint ci ratio: 1.020707e-01	ci left: 5.952130e-04	ci right 6.596449e-04	k: 1473	n:2350000
Cons ci ratio: 1.261076e-02	ci left: 3.924411e-02	ci right 3.974256e-02	k: 92808	n:2350000
KS ci ratio: 6.195113e-02	ci left: 1.648150e-03	ci right 1.753935e-03	k: 3996	n:2350000
ING1   2350000 perm   2546 sec   (923 perm/sec)   p_kst 1.700426e-03   p_cons 3.949277e-02   p_joint 6.268085e-04

Joint ci ratio: 1.022445e-01	ci left: 5.906263e-04	ci right 6.546771e-04	k: 1468	n:2360000
Cons ci ratio: 1.258274e-02	ci left: 3.925227e-02	ci right 3.974971e-02	k: 93221	n:2360000
KS ci ratio: 6.175050e-02	ci left: 1.652013e-03	ci right 1.757690e-03	k: 4022	n:2360000
ING1   2360000 perm   2565 sec   (920 perm/sec)   p_kst 1.704237e-03   p_cons 3.950042e-02   p_joint 6.220339e-04

Joint ci ratio: 1.056070e-01	ci left: 5.503238e-04	ci right 6.120885e-04	k: 1376	n:2370000
Cons ci ratio: 1.255575e-02	ci left: 3.925531e-02	ci right 3.975172e-02	k: 93622	n:2370000
KS ci ratio: 6.159754e-02	ci left: 1.653352e-03	ci right 1.758842e-03	k: 4042	n:2370000
ING1   2370000 perm   2584 sec   (917 perm/sec)   p_kst 1.705485e-03   p_cons 3.950295e-02   p_joint 5.805907e-04

Joint ci ratio: 1.057610e-01	ci left: 5.463752e-04	ci right 6.077917e-04	k: 1372	n:2380000
Cons ci ratio: 1.252817e-02	ci left: 3.926294e-02	ci right 3.975835e-02	k: 94034	n:2380000
KS ci ratio: 6.148361e-02	ci left: 1.652610e-03	ci right 1.757852e-03	k: 4057	n:2380000
ING1   2380000 perm   2604 sec   (914 perm/sec)   p_kst 1.704622e-03   p_cons 3.951008e-02   p_joint 5.764706e-04

Joint ci ratio: 1.055689e-01	ci left: 5.461259e-04	ci right 6.073960e-04	k: 1377	n:2390000
Cons ci ratio: 1.250263e-02	ci left: 3.925925e-02	ci right 3.975359e-02	k: 94419	n:2390000
KS ci ratio: 6.136278e-02	ci left: 1.652287e-03	ci right 1.757294e-03	k: 4073	n:2390000
ING1   2390000 perm   2623 sec   (911 perm/sec)   p_kst 1.704184e-03   p_cons 3.950586e-02   p_joint 5.761506e-04

Joint ci ratio: 1.061098e-01	ci left: 5.381713e-04	ci right 5.988776e-04	k: 1363	n:2400000
Cons ci ratio: 1.247772e-02	ci left: 3.925267e-02	ci right 3.974594e-02	k: 94797	n:2400000
KS ci ratio: 6.125015e-02	ci left: 1.651557e-03	ci right 1.756318e-03	k: 4088	n:2400000
ING1   2400000 perm   2643 sec   (908 perm/sec)   p_kst 1.703333e-03   p_cons 3.949875e-02   p_joint 5.679167e-04

Joint ci ratio: 1.058771e-01	ci left: 5.383619e-04	ci right 5.989483e-04	k: 1369	n:2410000
Cons ci ratio: 1.245140e-02	ci left: 3.925567e-02	ci right 3.974793e-02	k: 95198	n:2410000
KS ci ratio: 6.113068e-02	ci left: 1.651241e-03	ci right 1.755771e-03	k: 4104	n:2410000
ING1   2410000 perm   2663 sec   (905 perm/sec)   p_kst 1.702905e-03   p_cons 3.950124e-02   p_joint 5.680498e-04

Joint ci ratio: 1.056845e-01	ci left: 5.381487e-04	ci right 5.985940e-04	k: 1374	n:2420000
Cons ci ratio: 1.242314e-02	ci left: 3.927142e-02	ci right 3.976274e-02	k: 95630	n:2420000
KS ci ratio: 6.098226e-02	ci left: 1.652556e-03	ci right 1.756906e-03	k: 4124	n:2420000
ING1   2420000 perm   2683 sec   (902 perm/sec)   p_kst 1.704132e-03   p_cons 3.951653e-02   p_joint 5.677686e-04

Joint ci ratio: 1.107130e-01	ci left: 4.870855e-04	ci right 5.445684e-04	k: 1252	n:2430000
Cons ci ratio: 1.239763e-02	ci left: 3.927144e-02	ci right 3.976175e-02	k: 96024	n:2430000
KS ci ratio: 6.090119e-02	ci left: 1.650213e-03	ci right 1.754272e-03	k: 4135	n:2430000
ING1   2430000 perm   2703 sec   (899 perm/sec)   p_kst 1.701646e-03   p_cons 3.951605e-02   p_joint 5.152263e-04

Joint ci ratio: 1.104488e-01	ci left: 4.874803e-04	ci right 5.448635e-04	k: 1258	n:2440000
Cons ci ratio: 1.237215e-02	ci left: 3.927229e-02	ci right 3.976159e-02	k: 96420	n:2440000
KS ci ratio: 6.079108e-02	ci left: 1.649504e-03	ci right 1.753323e-03	k: 4150	n:2440000
ING1   2440000 perm   2723 sec   (896 perm/sec)   p_kst 1.700820e-03   p_cons 3.951639e-02   p_joint 5.155738e-04

Joint ci ratio: 1.101430e-01	ci left: 4.882689e-04	ci right 5.455755e-04	k: 1265	n:2450000
Cons ci ratio: 1.234708e-02	ci left: 3.927150e-02	ci right 3.975980e-02	k: 96812	n:2450000
KS ci ratio: 6.066698e-02	ci left: 1.649605e-03	ci right 1.753211e-03	k: 4167	n:2450000
ING1   2450000 perm   2742 sec   (893 perm/sec)   p_kst 1.700816e-03   p_cons 3.951510e-02   p_joint 5.163265e-04

Joint ci ratio: 1.099694e-01	ci left: 4.878653e-04	ci right 5.450285e-04	k: 1269	n:2460000
Cons ci ratio: 1.231940e-02	ci left: 3.928774e-02	ci right 3.977514e-02	k: 97246	n:2460000
KS ci ratio: 6.057990e-02	ci left: 1.647703e-03	ci right 1.751036e-03	k: 4179	n:2460000
ING1   2460000 perm   2763 sec   (890 perm/sec)   p_kst 1.698780e-03   p_cons 3.953089e-02   p_joint 5.158537e-04

Joint ci ratio: 1.096246e-01	ci left: 4.890401e-04	ci right 5.461496e-04	k: 1277	n:2470000
Cons ci ratio: 1.229518e-02	ci left: 3.928366e-02	ci right 3.977005e-02	k: 97630	n:2470000
KS ci ratio: 6.042104e-02	ci left: 1.649805e-03	ci right 1.752989e-03	k: 4201	n:2470000
ING1   2470000 perm   2783 sec   (888 perm/sec)   p_kst 1.700810e-03   p_cons 3.952632e-02   p_joint 5.170040e-04

Joint ci ratio: 1.093682e-01	ci left: 4.894212e-04	ci right 5.464330e-04	k: 1283	n:2480000
Cons ci ratio: 1.227012e-02	ci left: 3.928566e-02	ci right 3.977106e-02	k: 98029	n:2480000
KS ci ratio: 6.033502e-02	ci left: 1.647918e-03	ci right 1.750832e-03	k: 4213	n:2480000
ING1   2480000 perm   2803 sec   (885 perm/sec)   p_kst 1.698790e-03   p_cons 3.952782e-02   p_joint 5.173387e-04

Joint ci ratio: 1.089447e-01	ci left: 4.913621e-04	ci right 5.483641e-04	k: 1293	n:2490000
Cons ci ratio: 1.224567e-02	ci left: 3.928483e-02	ci right 3.976925e-02	k: 98421	n:2490000
KS ci ratio: 6.022081e-02	ci left: 1.647629e-03	ci right 1.750323e-03	k: 4229	n:2490000
ING1   2490000 perm   2823 sec   (882 perm/sec)   p_kst 1.698394e-03   p_cons 3.952651e-02   p_joint 5.192771e-04

Joint ci ratio: 1.091136e-01	ci left: 4.878403e-04	ci right 5.445271e-04	k: 1289	n:2500000
Cons ci ratio: 1.222188e-02	ci left: 3.928082e-02	ci right 3.976425e-02	k: 98805	n:2500000
KS ci ratio: 6.010016e-02	ci left: 1.647736e-03	ci right 1.750224e-03	k: 4246	n:2500000
ING1   2500000 perm   2846 sec   (878 perm/sec)   p_kst 1.698400e-03   p_cons 3.952200e-02   p_joint 5.156000e-04

Joint ci ratio: 1.088188e-01	ci left: 4.886095e-04	ci right 5.452225e-04	k: 1296	n:2510000
Cons ci ratio: 1.219573e-02	ci left: 3.929234e-02	ci right 3.977486e-02	k: 99228	n:2510000
KS ci ratio: 5.998728e-02	ci left: 1.647450e-03	ci right 1.749721e-03	k: 4262	n:2510000
ING1   2510000 perm   2866 sec   (876 perm/sec)   p_kst 1.698008e-03   p_cons 3.953307e-02   p_joint 5.163347e-04

Joint ci ratio: 9.535107e-02	ci left: 6.382741e-04	ci right 7.025649e-04	k: 1688	n:2520000
Cons ci ratio: 1.217299e-02	ci left: 3.928358e-02	ci right 3.976510e-02	k: 99600	n:2520000
KS ci ratio: 5.980508e-02	ci left: 1.651075e-03	ci right 1.753250e-03	k: 4288	n:2520000
ING1   2520000 perm   2887 sec   (873 perm/sec)   p_kst 1.701587e-03   p_cons 3.952381e-02   p_joint 6.698413e-04

Outputting figure to mutsig2_images.part000000000085/ING1.6_1425_2520000_0.0017016_0.039524_0.00066984.png
                gene_name: ING1
               theta_stop: 0.095 
                    nperm: 2520000 
                     p_ks: 0.0017 
        ci_ks_bounds_left: 0.0017 
       ci_ks_bounds_right: 0.0018 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.00067 
     ci_joint_bounds_left: 0.00064 
    ci_joint_bounds_right: 0.00070 

Current progress: 18 percent done.
IL27RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.072868e-02	ci left: 1.501165e-01	ci right 1.644837e-01	k: 1572	n:10000
Cons ci ratio: 1.054030e-01	ci left: 1.150598e-01	ci right 1.279615e-01	k: 1214	n:10000
KS ci ratio: 9.076292e-02	ci left: 1.500184e-01	ci right 1.643819e-01	k: 1571	n:10000
IL27RA   10000 perm   2 sec   (5667 perm/sec)   p_kst 1.571000e-01   p_cons 1.214000e-01   p_joint 1.572000e-01

Joint ci ratio: 9.361530e-02	ci left: 7.681453e-02	ci right 8.440792e-02	k: 1611	n:20000
Cons ci ratio: 7.561694e-02	ci left: 1.139531e-01	ci right 1.229581e-01	k: 2368	n:20000
KS ci ratio: 6.424070e-02	ci left: 1.518845e-01	ci right 1.620154e-01	k: 3138	n:20000
IL27RA   20000 perm   4 sec   (5125 perm/sec)   p_kst 1.569000e-01   p_cons 1.184000e-01   p_joint 8.055000e-02

Outputting figure to mutsig2_images.part000000000085/IL27RA.5_1967_20000_0.1569_0.1184_0.08055.png
                gene_name: IL27RA
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.084 

Current progress: 19 percent done.
IL31RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.421704e-02	ci left: 8.773570e-01	ci right 8.900186e-01	k: 8838	n:10000
KS ci ratio: 2.191363e-02	ci left: 7.534265e-01	ci right 7.702207e-01	k: 7619	n:10000
IL31RA   10000 perm   2 sec   (5773 perm/sec)   p_kst 7.619000e-01   p_cons 8.838000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IL31RA.5_2355_10000_0.7619_0.8838_1.png
                gene_name: IL31RA
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
IMMP2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.269812e-02	ci left: 7.402790e-01	ci right 7.573759e-01	k: 7489	n:10000
KS ci ratio: 8.933874e-03	ci left: 9.462737e-01	ci right 9.548614e-01	k: 9507	n:10000
IMMP2L   10000 perm   2 sec   (5649 perm/sec)   p_kst 9.507000e-01   p_cons 7.489000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IMMP2L.5_548_10000_0.9507_0.7489_1.png
                gene_name: IMMP2L
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
INADL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.274162e-02	ci left: 5.792819e-01	ci right 5.986662e-01	k: 5890	n:10000
Cons ci ratio: 1.942301e-02	ci left: 7.949654e-01	ci right 8.106578e-01	k: 8029	n:10000
KS ci ratio: 4.899491e-02	ci left: 3.806225e-01	ci right 3.998415e-01	k: 3902	n:10000
INADL   10000 perm   2 sec   (4283 perm/sec)   p_kst 3.902000e-01   p_cons 8.029000e-01   p_joint 5.890000e-01

Outputting figure to mutsig2_images.part000000000085/INADL.5_5574_10000_0.3902_0.8029_0.589.png
                gene_name: INADL
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 25 percent done.
INPP5K
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.262613e-02	ci left: 2.726011e-01	ci right 2.903264e-01	k: 2814	n:10000
Cons ci ratio: 6.073045e-02	ci left: 2.850816e-01	ci right 3.030385e-01	k: 2940	n:10000
KS ci ratio: 7.543835e-02	ci left: 2.045169e-01	ci right 2.206509e-01	k: 2125	n:10000
INPP5K   10000 perm   2 sec   (6368 perm/sec)   p_kst 2.125000e-01   p_cons 2.940000e-01   p_joint 2.814000e-01

Outputting figure to mutsig2_images.part000000000085/INPP5K.5_1395_10000_0.2125_0.294_0.2814.png
                gene_name: INPP5K
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 26 percent done.
INSL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.022342e-02	ci left: 7.816803e-01	ci right 7.977506e-01	k: 7898	n:10000
Cons ci ratio: 1.772965e-02	ci left: 8.226953e-01	ci right 8.375119e-01	k: 8302	n:10000
KS ci ratio: 2.904114e-02	ci left: 6.361335e-01	ci right 6.549816e-01	k: 6456	n:10000
INSL6   10000 perm   2 sec   (5886 perm/sec)   p_kst 6.456000e-01   p_cons 8.302000e-01   p_joint 7.898000e-01

Outputting figure to mutsig2_images.part000000000085/INSL6.5_650_10000_0.6456_0.8302_0.7898.png
                gene_name: INSL6
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 28 percent done.
ILF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.678445e-02	ci left: 8.378583e-01	ci right 8.521401e-01	k: 8451	n:10000
KS ci ratio: 1.585132e-02	ci left: 8.525343e-01	ci right 8.662556e-01	k: 8595	n:10000
ILF3   10000 perm   2 sec   (5456 perm/sec)   p_kst 8.595000e-01   p_cons 8.451000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/ILF3.4_2845_10000_0.8595_0.8451_1.png
                gene_name: ILF3
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
ILKAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.758145e-02	ci left: 5.111539e-01	ci right 5.308339e-01	k: 5210	n:10000
Cons ci ratio: 4.446792e-02	ci left: 4.274473e-01	ci right 4.469893e-01	k: 4372	n:10000
KS ci ratio: 4.570908e-02	ci left: 4.139884e-01	ci right 4.334561e-01	k: 4237	n:10000
ILKAP   10000 perm   2 sec   (6044 perm/sec)   p_kst 4.237000e-01   p_cons 4.372000e-01   p_joint 5.210000e-01

Outputting figure to mutsig2_images.part000000000085/ILKAP.4_1227_10000_0.4237_0.4372_0.521.png
                gene_name: ILKAP
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 32 percent done.
IMPDH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.224974e-03	ci left: 9.430505e-01	ci right 9.518865e-01	k: 9476	n:10000
Cons ci ratio: 2.631022e-02	ci left: 6.802263e-01	ci right 6.984633e-01	k: 6894	n:10000
KS ci ratio: 1.817418e-02	ci left: 8.154773e-01	ci right 8.305340e-01	k: 8231	n:10000
IMPDH2   10000 perm   2 sec   (6307 perm/sec)   p_kst 8.231000e-01   p_cons 6.894000e-01   p_joint 9.476000e-01

Outputting figure to mutsig2_images.part000000000085/IMPDH2.4_1601_10000_0.8231_0.6894_0.9476.png
                gene_name: IMPDH2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 33 percent done.
INPP5D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.980694e-01	ci left: 1.446512e-02	ci right 1.962175e-02	k: 169	n:10000
Cons ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
KS ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
INPP5D   10000 perm   2 sec   (5548 perm/sec)   p_kst 8.600000e-03   p_cons 1.200000e-03   p_joint 1.690000e-02

Joint ci ratio: 3.693575e-01	ci left: 4.567803e-03	ci right 6.679840e-03	k: 111	n:20000
Cons ci ratio: 1.181570e+00	ci left: 2.397946e-04	ci right 9.193249e-04	k: 10	n:20000
KS ci ratio: 3.096304e-01	ci left: 6.720018e-03	ci right 9.226206e-03	k: 158	n:20000
INPP5D   20000 perm   4 sec   (4980 perm/sec)   p_kst 7.900000e-03   p_cons 5.000000e-04   p_joint 5.550000e-03

Joint ci ratio: 3.973651e-01	ci left: 2.592756e-03	ci right 3.906364e-03	k: 96	n:30000
Cons ci ratio: 9.236603e-01	ci left: 3.301378e-04	ci right 9.071337e-04	k: 17	n:30000
KS ci ratio: 2.525475e-01	ci left: 6.960659e-03	ci right 9.003021e-03	k: 238	n:30000
INPP5D   30000 perm   6 sec   (4754 perm/sec)   p_kst 7.933333e-03   p_cons 5.666667e-04   p_joint 3.200000e-03

Joint ci ratio: 5.380899e-01	ci left: 9.710499e-04	ci right 1.704432e-03	k: 52	n:40000
Cons ci ratio: 8.355065e-01	ci left: 3.250117e-04	ci right 8.024069e-04	k: 21	n:40000
KS ci ratio: 2.155539e-01	ci left: 7.315922e-03	ci right 9.106577e-03	k: 327	n:40000
INPP5D   40000 perm   9 sec   (4609 perm/sec)   p_kst 8.175000e-03   p_cons 5.250000e-04   p_joint 1.300000e-03

Joint ci ratio: 1.866959e-01	ci left: 7.923694e-03	ci right 9.574101e-03	k: 436	n:50000
Cons ci ratio: 7.154689e-01	ci left: 3.884684e-04	ci right 8.328714e-04	k: 29	n:50000
KS ci ratio: 1.913907e-01	ci left: 7.523421e-03	ci right 9.134446e-03	k: 415	n:50000
INPP5D   50000 perm   11 sec   (4497 perm/sec)   p_kst 8.300000e-03   p_cons 5.800000e-04   p_joint 8.720000e-03

Joint ci ratio: 2.077284e-01	ci left: 5.287067e-03	ci right 6.528124e-03	k: 353	n:60000
Cons ci ratio: 6.357013e-01	ci left: 4.342262e-04	ci right 8.498946e-04	k: 37	n:60000
KS ci ratio: 1.763615e-01	ci left: 7.446130e-03	ci right 8.902045e-03	k: 489	n:60000
INPP5D   60000 perm   14 sec   (4404 perm/sec)   p_kst 8.150000e-03   p_cons 6.166667e-04   p_joint 5.883333e-03

Joint ci ratio: 2.189756e-01	ci left: 4.058178e-03	ci right 5.069281e-03	k: 318	n:70000
Cons ci ratio: 6.046833e-01	ci left: 4.203504e-04	ci right 7.945046e-04	k: 41	n:70000
KS ci ratio: 1.623748e-01	ci left: 7.586368e-03	ci right 8.940583e-03	k: 577	n:70000
INPP5D   70000 perm   16 sec   (4318 perm/sec)   p_kst 8.242857e-03   p_cons 5.857143e-04   p_joint 4.542857e-03

Joint ci ratio: 1.865762e-01	ci left: 4.975419e-03	ci right 6.010940e-03	k: 438	n:80000
Cons ci ratio: 6.047066e-01	ci left: 3.678032e-04	ci right 6.952006e-04	k: 41	n:80000
KS ci ratio: 1.513770e-01	ci left: 7.682948e-03	ci right 8.953096e-03	k: 664	n:80000
INPP5D   80000 perm   19 sec   (4244 perm/sec)   p_kst 8.300000e-03   p_cons 5.125000e-04   p_joint 5.475000e-03

Joint ci ratio: 2.456140e-01	ci left: 2.475764e-03	ci right 3.179111e-03	k: 253	n:90000
Cons ci ratio: 5.908145e-01	ci left: 3.457911e-04	ci right 6.435102e-04	k: 43	n:90000
KS ci ratio: 1.449968e-01	ci left: 7.471181e-03	ci right 8.649747e-03	k: 724	n:90000
INPP5D   90000 perm   22 sec   (4172 perm/sec)   p_kst 8.044444e-03   p_cons 4.777778e-04   p_joint 2.811111e-03

Joint ci ratio: 2.456489e-01	ci left: 2.228151e-03	ci right 2.861253e-03	k: 253	n:100000
Cons ci ratio: 5.598600e-01	ci left: 3.539347e-04	ci right 6.363606e-04	k: 48	n:100000
KS ci ratio: 1.381238e-01	ci left: 7.437854e-03	ci right 8.550968e-03	k: 798	n:100000
INPP5D   100000 perm   24 sec   (4104 perm/sec)   p_kst 7.980000e-03   p_cons 4.800000e-04   p_joint 2.530000e-03

Joint ci ratio: 2.486384e-01	ci left: 1.974391e-03	ci right 2.543271e-03	k: 247	n:110000
Cons ci ratio: 5.434752e-01	ci left: 3.452266e-04	ci right 6.095517e-04	k: 51	n:110000
KS ci ratio: 1.326039e-01	ci left: 7.358916e-03	ci right 8.412733e-03	k: 866	n:110000
INPP5D   110000 perm   27 sec   (4041 perm/sec)   p_kst 7.872727e-03   p_cons 4.636364e-04   p_joint 2.245455e-03

Joint ci ratio: 2.331572e-01	ci left: 2.076119e-03	ci right 2.631702e-03	k: 281	n:120000
Cons ci ratio: 5.059412e-01	ci left: 3.742999e-04	ci right 6.341690e-04	k: 59	n:120000
KS ci ratio: 1.263419e-01	ci left: 7.455285e-03	ci right 8.468710e-03	k: 954	n:120000
INPP5D   120000 perm   30 sec   (3981 perm/sec)   p_kst 7.950000e-03   p_cons 4.916667e-04   p_joint 2.341667e-03

Joint ci ratio: 2.319452e-01	ci left: 1.938133e-03	ci right 2.453706e-03	k: 284	n:130000
Cons ci ratio: 4.898775e-01	ci left: 3.724112e-04	ci right 6.199916e-04	k: 63	n:130000
KS ci ratio: 1.217170e-01	ci left: 7.433369e-03	ci right 8.404158e-03	k: 1028	n:130000
INPP5D   130000 perm   33 sec   (3925 perm/sec)   p_kst 7.907692e-03   p_cons 4.846154e-04   p_joint 2.184615e-03

Joint ci ratio: 2.348716e-01	ci left: 1.752599e-03	ci right 2.225551e-03	k: 277	n:140000
Cons ci ratio: 4.586800e-01	ci left: 4.024180e-04	ci right 6.476146e-04	k: 72	n:140000
KS ci ratio: 1.173510e-01	ci left: 7.442902e-03	ci right 8.377652e-03	k: 1106	n:140000
INPP5D   140000 perm   36 sec   (3869 perm/sec)   p_kst 7.900000e-03   p_cons 5.142857e-04   p_joint 1.978571e-03

Joint ci ratio: 2.438378e-01	ci left: 1.510395e-03	ci right 1.935903e-03	k: 257	n:150000
Cons ci ratio: 4.409168e-01	ci left: 4.110594e-04	ci right 6.489417e-04	k: 78	n:150000
KS ci ratio: 1.128015e-01	ci left: 7.535937e-03	ci right 8.443237e-03	k: 1197	n:150000
INPP5D   150000 perm   39 sec   (3814 perm/sec)   p_kst 7.980000e-03   p_cons 5.200000e-04   p_joint 1.713333e-03

Joint ci ratio: 2.849687e-01	ci left: 1.013114e-03	ci right 1.355374e-03	k: 188	n:160000
Cons ci ratio: 4.225895e-01	ci left: 4.243650e-04	ci right 6.568576e-04	k: 85	n:160000
KS ci ratio: 1.087857e-01	ci left: 7.611871e-03	ci right 8.493596e-03	k: 1287	n:160000
INPP5D   160000 perm   43 sec   (3763 perm/sec)   p_kst 8.043750e-03   p_cons 5.312500e-04   p_joint 1.175000e-03

Joint ci ratio: 2.784192e-01	ci left: 1.002720e-03	ci right 1.332318e-03	k: 197	n:170000
Cons ci ratio: 4.042041e-01	ci left: 4.415691e-04	ci right 6.701428e-04	k: 93	n:170000
KS ci ratio: 1.055571e-01	ci left: 7.622090e-03	ci right 8.477168e-03	k: 1367	n:170000
INPP5D   170000 perm   46 sec   (3684 perm/sec)   p_kst 8.041176e-03   p_cons 5.470588e-04   p_joint 1.158824e-03

Joint ci ratio: 2.703471e-01	ci left: 1.009095e-03	ci right 1.329541e-03	k: 209	n:180000
Cons ci ratio: 3.979073e-01	ci left: 4.320224e-04	ci right 6.512529e-04	k: 96	n:180000
KS ci ratio: 1.026356e-01	ci left: 7.626104e-03	ci right 8.456525e-03	k: 1446	n:180000
INPP5D   180000 perm   50 sec   (3636 perm/sec)   p_kst 8.033333e-03   p_cons 5.333333e-04   p_joint 1.161111e-03

Joint ci ratio: 2.623478e-01	ci left: 1.019839e-03	ci right 1.332542e-03	k: 222	n:190000
Cons ci ratio: 3.880326e-01	ci left: 4.330000e-04	ci right 6.458797e-04	k: 101	n:190000
KS ci ratio: 9.987801e-02	ci left: 7.640253e-03	ci right 8.448550e-03	k: 1527	n:190000
INPP5D   190000 perm   53 sec   (3586 perm/sec)   p_kst 8.036842e-03   p_cons 5.315789e-04   p_joint 1.168421e-03

Joint ci ratio: 2.936849e-01	ci left: 7.594661e-04	ci right 1.025343e-03	k: 177	n:200000
Cons ci ratio: 3.806422e-01	ci left: 4.294174e-04	ci right 6.355094e-04	k: 105	n:200000
KS ci ratio: 9.720966e-02	ci left: 7.672772e-03	ci right 8.461586e-03	k: 1612	n:200000
INPP5D   200000 perm   57 sec   (3526 perm/sec)   p_kst 8.060000e-03   p_cons 5.250000e-04   p_joint 8.850000e-04

Joint ci ratio: 3.107578e-01	ci left: 6.396727e-04	ci right 8.792171e-04	k: 158	n:210000
Cons ci ratio: 3.703055e-01	ci left: 4.348447e-04	ci right 6.365020e-04	k: 111	n:210000
KS ci ratio: 9.460402e-02	ci left: 7.725704e-03	ci right 8.497490e-03	k: 1702	n:210000
INPP5D   210000 perm   60 sec   (3482 perm/sec)   p_kst 8.104762e-03   p_cons 5.285714e-04   p_joint 7.523810e-04

Joint ci ratio: 3.041355e-01	ci left: 6.399607e-04	ci right 8.735177e-04	k: 165	n:220000
Cons ci ratio: 3.638661e-01	ci left: 4.315837e-04	ci right 6.274221e-04	k: 115	n:220000
KS ci ratio: 9.243142e-02	ci left: 7.734108e-03	ci right 8.488030e-03	k: 1783	n:220000
INPP5D   220000 perm   64 sec   (3437 perm/sec)   p_kst 8.104545e-03   p_cons 5.227273e-04   p_joint 7.500000e-04

Joint ci ratio: 2.953674e-01	ci left: 6.523464e-04	ci right 8.822754e-04	k: 175	n:230000
Cons ci ratio: 3.519307e-01	ci left: 4.444757e-04	ci right 6.380384e-04	k: 123	n:230000
KS ci ratio: 9.037752e-02	ci left: 7.746216e-03	ci right 8.483652e-03	k: 1865	n:230000
INPP5D   230000 perm   68 sec   (3393 perm/sec)   p_kst 8.108696e-03   p_cons 5.347826e-04   p_joint 7.608696e-04

Joint ci ratio: 2.920694e-01	ci left: 6.406036e-04	ci right 8.634061e-04	k: 179	n:240000
Cons ci ratio: 3.463892e-01	ci left: 4.411609e-04	ci right 6.295763e-04	k: 127	n:240000
KS ci ratio: 8.834049e-02	ci left: 7.777862e-03	ci right 8.500759e-03	k: 1952	n:240000
INPP5D   240000 perm   72 sec   (3350 perm/sec)   p_kst 8.133333e-03   p_cons 5.291667e-04   p_joint 7.458333e-04

Joint ci ratio: 2.987938e-01	ci left: 5.853479e-04	ci right 7.945095e-04	k: 171	n:250000
Cons ci ratio: 3.385450e-01	ci left: 4.454509e-04	ci right 6.304491e-04	k: 133	n:250000
KS ci ratio: 8.656370e-02	ci left: 7.783662e-03	ci right 8.491812e-03	k: 2033	n:250000
INPP5D   250000 perm   76 sec   (3309 perm/sec)   p_kst 8.132000e-03   p_cons 5.320000e-04   p_joint 6.840000e-04

Joint ci ratio: 2.953805e-01	ci left: 5.770722e-04	ci right 7.804799e-04	k: 175	n:260000
Cons ci ratio: 3.348193e-01	ci left: 4.388810e-04	ci right 6.187118e-04	k: 136	n:260000
KS ci ratio: 8.509303e-02	ci left: 7.751500e-03	ci right 8.444148e-03	k: 2104	n:260000
INPP5D   260000 perm   80 sec   (3269 perm/sec)   p_kst 8.092308e-03   p_cons 5.230769e-04   p_joint 6.730769e-04

Joint ci ratio: 2.896760e-01	ci left: 5.797231e-04	ci right 7.793959e-04	k: 182	n:270000
Cons ci ratio: 3.300367e-01	ci left: 4.362045e-04	ci right 6.118436e-04	k: 140	n:270000
KS ci ratio: 8.365609e-02	ci left: 7.729069e-03	ci right 8.407480e-03	k: 2177	n:270000
INPP5D   270000 perm   84 sec   (3231 perm/sec)   p_kst 8.062963e-03   p_cons 5.185185e-04   p_joint 6.740741e-04

Joint ci ratio: 2.835440e-01	ci left: 5.855370e-04	ci right 7.821795e-04	k: 190	n:280000
Cons ci ratio: 3.254534e-01	ci left: 4.337361e-04	ci right 6.054492e-04	k: 144	n:280000
KS ci ratio: 8.236337e-02	ci left: 7.694338e-03	ci right 8.358763e-03	k: 2246	n:280000
INPP5D   280000 perm   88 sec   (3194 perm/sec)   p_kst 8.021429e-03   p_cons 5.142857e-04   p_joint 6.785714e-04

Joint ci ratio: 2.691278e-01	ci left: 6.327480e-04	ci right 8.326202e-04	k: 211	n:290000
Cons ci ratio: 3.189215e-01	ci left: 4.377965e-04	ci right 6.069285e-04	k: 150	n:290000
KS ci ratio: 7.923654e-02	ci left: 8.037223e-03	ci right 8.703693e-03	k: 2426	n:290000
INPP5D   290000 perm   92 sec   (3159 perm/sec)   p_kst 8.365517e-03   p_cons 5.172414e-04   p_joint 7.275862e-04

Joint ci ratio: 4.788499e-01	ci left: 1.701519e-04	ci right 2.798856e-04	k: 66	n:300000
Cons ci ratio: 3.880712e-01	ci left: 2.742286e-04	ci right 4.090657e-04	k: 101	n:300000
KS ci ratio: 7.782179e-02	ci left: 8.060160e-03	ci right 8.716057e-03	k: 2515	n:300000
INPP5D   300000 perm   96 sec   (3124 perm/sec)   p_kst 8.383333e-03   p_cons 3.366667e-04   p_joint 2.200000e-04

Joint ci ratio: 4.861644e-01	ci left: 1.589964e-04	ci right 2.636266e-04	k: 64	n:310000
Cons ci ratio: 3.843225e-01	ci left: 2.712076e-04	ci right 4.029453e-04	k: 103	n:310000
KS ci ratio: 7.646541e-02	ci left: 8.084880e-03	ci right 8.730812e-03	k: 2605	n:310000
INPP5D   310000 perm   100 sec   (3090 perm/sec)   p_kst 8.403226e-03   p_cons 3.322581e-04   p_joint 2.064516e-04

Joint ci ratio: 4.861660e-01	ci left: 1.540277e-04	ci right 2.553885e-04	k: 64	n:320000
Cons ci ratio: 3.788967e-01	ci left: 2.712081e-04	ci right 4.006234e-04	k: 106	n:320000
KS ci ratio: 7.520570e-02	ci left: 8.102015e-03	ci right 8.738186e-03	k: 2693	n:320000
INPP5D   320000 perm   105 sec   (3057 perm/sec)   p_kst 8.415625e-03   p_cons 3.312500e-04   p_joint 2.000000e-04

Joint ci ratio: 4.824697e-01	ci left: 1.520202e-04	ci right 2.510473e-04	k: 65	n:330000
Cons ci ratio: 3.736945e-01	ci left: 2.712208e-04	ci right 3.984302e-04	k: 109	n:330000
KS ci ratio: 7.424889e-02	ci left: 8.064651e-03	ci right 8.689483e-03	k: 2763	n:330000
INPP5D   330000 perm   109 sec   (3023 perm/sec)   p_kst 8.372727e-03   p_cons 3.303030e-04   p_joint 1.969697e-04

Joint ci ratio: 4.651691e-01	ci left: 1.604988e-04	ci right 2.601129e-04	k: 70	n:340000
Cons ci ratio: 3.670795e-01	ci left: 2.739135e-04	ci right 3.995665e-04	k: 113	n:340000
KS ci ratio: 7.305523e-02	ci left: 8.090177e-03	ci right 8.706482e-03	k: 2854	n:340000
INPP5D   340000 perm   114 sec   (2989 perm/sec)   p_kst 8.394118e-03   p_cons 3.323529e-04   p_joint 2.058824e-04

Joint ci ratio: 4.556419e-01	ci left: 1.634902e-04	ci right 2.622402e-04	k: 73	n:350000
Cons ci ratio: 3.608039e-01	ci left: 2.764710e-04	ci right 4.006194e-04	k: 117	n:350000
KS ci ratio: 7.216478e-02	ci left: 8.058198e-03	ci right 8.664270e-03	k: 2925	n:350000
INPP5D   350000 perm   118 sec   (2956 perm/sec)   p_kst 8.357143e-03   p_cons 3.342857e-04   p_joint 2.085714e-04

Joint ci ratio: 4.466771e-01	ci left: 1.663350e-04	ci right 2.642300e-04	k: 76	n:360000
Cons ci ratio: 3.577853e-01	ci left: 2.738453e-04	ci right 3.955461e-04	k: 119	n:360000
KS ci ratio: 7.109115e-02	ci left: 8.077156e-03	ci right 8.675243e-03	k: 3014	n:360000
INPP5D   360000 perm   123 sec   (2925 perm/sec)   p_kst 8.372222e-03   p_cons 3.305556e-04   p_joint 2.111111e-04

Joint ci ratio: 4.587554e-01	ci left: 1.522613e-04	ci right 2.450535e-04	k: 72	n:370000
Cons ci ratio: 3.491614e-01	ci left: 2.812208e-04	ci right 4.025055e-04	k: 125	n:370000
KS ci ratio: 6.993919e-02	ci left: 8.124365e-03	ci right 8.715805e-03	k: 3114	n:370000
INPP5D   370000 perm   128 sec   (2894 perm/sec)   p_kst 8.416216e-03   p_cons 3.378378e-04   p_joint 1.945946e-04

Joint ci ratio: 4.496093e-01	ci left: 1.552458e-04	ci right 2.473968e-04	k: 75	n:380000
Cons ci ratio: 3.450777e-01	ci left: 2.810268e-04	ci right 4.004936e-04	k: 128	n:380000
KS ci ratio: 6.901486e-02	ci left: 8.127779e-03	ci right 8.711333e-03	k: 3198	n:380000
INPP5D   380000 perm   133 sec   (2863 perm/sec)   p_kst 8.415789e-03   p_cons 3.368421e-04   p_joint 1.973684e-04

Joint ci ratio: 4.496104e-01	ci left: 1.512651e-04	ci right 2.410535e-04	k: 75	n:390000
Cons ci ratio: 3.424340e-01	ci left: 2.785064e-04	ci right 3.957939e-04	k: 130	n:390000
KS ci ratio: 6.813670e-02	ci left: 8.128545e-03	ci right 8.704435e-03	k: 3281	n:390000
INPP5D   390000 perm   138 sec   (2829 perm/sec)   p_kst 8.412821e-03   p_cons 3.333333e-04   p_joint 1.923077e-04

Joint ci ratio: 4.409904e-01	ci left: 1.541424e-04	ci right 2.433629e-04	k: 78	n:400000
Cons ci ratio: 3.360797e-01	ci left: 2.829791e-04	ci right 3.994597e-04	k: 135	n:400000
KS ci ratio: 6.722076e-02	ci left: 8.146526e-03	ci right 8.715629e-03	k: 3371	n:400000
INPP5D   400000 perm   143 sec   (2800 perm/sec)   p_kst 8.427500e-03   p_cons 3.375000e-04   p_joint 1.950000e-04

Joint ci ratio: 4.438098e-01	ci left: 1.482154e-04	ci right 2.347184e-04	k: 77	n:410000
Cons ci ratio: 3.348518e-01	ci left: 2.783107e-04	ci right 3.923607e-04	k: 136	n:410000
KS ci ratio: 6.645705e-02	ci left: 8.134893e-03	ci right 8.696478e-03	k: 3449	n:410000
INPP5D   410000 perm   148 sec   (2772 perm/sec)   p_kst 8.412195e-03   p_cons 3.317073e-04   p_joint 1.878049e-04

Joint ci ratio: 4.355130e-01	ci left: 1.510386e-04	ci right 2.370586e-04	k: 80	n:420000
Cons ci ratio: 3.348532e-01	ci left: 2.716841e-04	ci right 3.830191e-04	k: 136	n:420000
KS ci ratio: 6.573758e-02	ci left: 8.119164e-03	ci right 8.673364e-03	k: 3525	n:420000
INPP5D   420000 perm   153 sec   (2744 perm/sec)   p_kst 8.392857e-03   p_cons 3.238095e-04   p_joint 1.904762e-04

Joint ci ratio: 4.438118e-01	ci left: 1.413216e-04	ci right 2.238015e-04	k: 77	n:430000
Cons ci ratio: 3.289044e-01	ci left: 2.760251e-04	ci right 3.867047e-04	k: 141	n:430000
KS ci ratio: 6.493199e-02	ci left: 8.131656e-03	ci right 8.679650e-03	k: 3613	n:430000
INPP5D   430000 perm   158 sec   (2717 perm/sec)   p_kst 8.402326e-03   p_cons 3.279070e-04   p_joint 1.790698e-04

Joint ci ratio: 4.438128e-01	ci left: 1.381097e-04	ci right 2.187152e-04	k: 77	n:440000
Cons ci ratio: 3.221675e-01	ci left: 2.822742e-04	ci right 3.926625e-04	k: 147	n:440000
KS ci ratio: 6.426043e-02	ci left: 8.116781e-03	ci right 8.657905e-03	k: 3689	n:440000
INPP5D   440000 perm   164 sec   (2691 perm/sec)   p_kst 8.384091e-03   p_cons 3.340909e-04   p_joint 1.750000e-04

Joint ci ratio: 4.824827e-01	ci left: 1.114809e-04	ci right 1.841027e-04	k: 65	n:450000
Cons ci ratio: 3.200130e-01	ci left: 2.800876e-04	ci right 3.887382e-04	k: 149	n:450000
KS ci ratio: 6.460271e-02	ci left: 7.853290e-03	ci right 8.379740e-03	k: 3651	n:450000
INPP5D   450000 perm   169 sec   (2663 perm/sec)   p_kst 8.113333e-03   p_cons 3.311111e-04   p_joint 1.444444e-04

Joint ci ratio: 4.788688e-01	ci left: 1.109678e-04	ci right 1.825360e-04	k: 66	n:460000
Cons ci ratio: 3.179011e-01	ci left: 2.779985e-04	ci right 3.849822e-04	k: 151	n:460000
KS ci ratio: 6.388937e-02	ci left: 7.857964e-03	ci right 8.378695e-03	k: 3733	n:460000
INPP5D   460000 perm   175 sec   (2635 perm/sec)   p_kst 8.115217e-03   p_cons 3.282609e-04   p_joint 1.434783e-04

Joint ci ratio: 4.753349e-01	ci left: 1.104784e-04	ci right 1.810340e-04	k: 67	n:470000
Cons ci ratio: 3.148097e-01	ci left: 2.779599e-04	ci right 3.836792e-04	k: 154	n:470000
KS ci ratio: 6.324929e-02	ci left: 7.849904e-03	ci right 8.364699e-03	k: 3809	n:470000
INPP5D   470000 perm   180 sec   (2609 perm/sec)   p_kst 8.104255e-03   p_cons 3.276596e-04   p_joint 1.425532e-04

Joint ci ratio: 5.285419e-01	ci left: 8.451456e-05	ci right 1.467856e-04	k: 54	n:480000
Cons ci ratio: 3.098512e-01	ci left: 2.817695e-04	ci right 3.869162e-04	k: 159	n:480000
KS ci ratio: 6.381420e-02	ci left: 7.551011e-03	ci right 8.050791e-03	k: 3743	n:480000
INPP5D   480000 perm   186 sec   (2583 perm/sec)   p_kst 7.797917e-03   p_cons 3.312500e-04   p_joint 1.125000e-04

Joint ci ratio: 5.285425e-01	ci left: 8.278975e-05	ci right 1.437900e-04	k: 54	n:490000
Cons ci ratio: 3.060490e-01	ci left: 2.835517e-04	ci right 3.878120e-04	k: 163	n:490000
KS ci ratio: 6.316801e-02	ci left: 7.551557e-03	ci right 8.046126e-03	k: 3820	n:490000
INPP5D   490000 perm   192 sec   (2559 perm/sec)   p_kst 7.795918e-03   p_cons 3.326531e-04   p_joint 1.102041e-04

Joint ci ratio: 5.191866e-01	ci left: 8.460467e-05	ci right 1.454389e-04	k: 56	n:500000
Cons ci ratio: 3.014872e-01	ci left: 2.871187e-04	ci right 3.908154e-04	k: 168	n:500000
KS ci ratio: 6.256533e-02	ci left: 7.546199e-03	ci right 8.035531e-03	k: 3894	n:500000
INPP5D   500000 perm   197 sec   (2533 perm/sec)   p_kst 7.788000e-03   p_cons 3.360000e-04   p_joint 1.120000e-04

Joint ci ratio: 5.191872e-01	ci left: 8.294573e-05	ci right 1.425872e-04	k: 56	n:510000
Cons ci ratio: 2.988465e-01	ci left: 2.869283e-04	ci right 3.894764e-04	k: 171	n:510000
KS ci ratio: 6.202684e-02	ci left: 7.529488e-03	ci right 8.013384e-03	k: 3962	n:510000
INPP5D   510000 perm   203 sec   (2509 perm/sec)   p_kst 7.768627e-03   p_cons 3.352941e-04   p_joint 1.098039e-04

Joint ci ratio: 5.543445e-01	ci left: 6.971323e-05	ci right 1.245762e-04	k: 49	n:520000
Cons ci ratio: 2.954308e-01	ci left: 2.885295e-04	ci right 3.902504e-04	k: 175	n:520000
KS ci ratio: 6.147129e-02	ci left: 7.521013e-03	ci right 7.999880e-03	k: 4034	n:520000
INPP5D   520000 perm   209 sec   (2486 perm/sec)   p_kst 7.757692e-03   p_cons 3.365385e-04   p_joint 9.423077e-05

Joint ci ratio: 5.435790e-01	ci left: 7.164770e-05	ci right 1.265180e-04	k: 51	n:530000
Cons ci ratio: 2.929448e-01	ci left: 2.883282e-04	ci right 3.889641e-04	k: 178	n:530000
KS ci ratio: 6.094536e-02	ci left: 7.509160e-03	ci right 7.983038e-03	k: 4104	n:530000
INPP5D   530000 perm   216 sec   (2458 perm/sec)   p_kst 7.743396e-03   p_cons 3.358491e-04   p_joint 9.622642e-05

Joint ci ratio: 5.599741e-01	ci left: 6.554035e-05	ci right 1.178521e-04	k: 48	n:540000
Cons ci ratio: 2.889367e-01	ci left: 2.915725e-04	ci right 3.916940e-04	k: 183	n:540000
KS ci ratio: 6.037444e-02	ci left: 7.512355e-03	ci right 7.981838e-03	k: 4182	n:540000
INPP5D   540000 perm   222 sec   (2437 perm/sec)   p_kst 7.744444e-03   p_cons 3.388889e-04   p_joint 8.888889e-05

Joint ci ratio: 5.543460e-01	ci left: 6.591065e-05	ci right 1.177812e-04	k: 49	n:550000
Cons ci ratio: 2.850888e-01	ci left: 2.947079e-04	ci right 3.943157e-04	k: 188	n:550000
KS ci ratio: 5.988303e-02	ci left: 7.499334e-03	ci right 7.964056e-03	k: 4251	n:550000
INPP5D   550000 perm   228 sec   (2416 perm/sec)   p_kst 7.729091e-03   p_cons 3.418182e-04   p_joint 8.909091e-05

Joint ci ratio: 5.543465e-01	ci left: 6.473366e-05	ci right 1.156780e-04	k: 49	n:560000
Cons ci ratio: 2.813906e-01	ci left: 2.977397e-04	ci right 3.968354e-04	k: 193	n:560000
KS ci ratio: 5.950065e-02	ci left: 7.462161e-03	ci right 7.921526e-03	k: 4306	n:560000
INPP5D   560000 perm   234 sec   (2396 perm/sec)   p_kst 7.689286e-03   p_cons 3.446429e-04   p_joint 8.750000e-05

Joint ci ratio: 5.488848e-01	ci left: 6.510763e-05	ci right 1.156453e-04	k: 50	n:570000
Cons ci ratio: 2.799516e-01	ci left: 2.957780e-04	ci right 3.936285e-04	k: 195	n:570000
KS ci ratio: 5.909819e-02	ci left: 7.433217e-03	ci right 7.887598e-03	k: 4365	n:570000
INPP5D   570000 perm   240 sec   (2376 perm/sec)   p_kst 7.657895e-03   p_cons 3.421053e-04   p_joint 8.771930e-05

Joint ci ratio: 5.599759e-01	ci left: 6.102028e-05	ci right 1.097244e-04	k: 48	n:580000
Cons ci ratio: 2.778335e-01	ci left: 2.954891e-04	ci right 3.923750e-04	k: 198	n:580000
KS ci ratio: 5.855727e-02	ci left: 7.442660e-03	ci right 7.893314e-03	k: 4446	n:580000
INPP5D   580000 perm   246 sec   (2356 perm/sec)   p_kst 7.665517e-03   p_cons 3.413793e-04   p_joint 8.275862e-05

Joint ci ratio: 5.717675e-01	ci left: 5.708153e-05	ci right 1.039945e-04	k: 46	n:590000
Cons ci ratio: 2.750825e-01	ci left: 2.967905e-04	ci right 3.929730e-04	k: 202	n:590000
KS ci ratio: 5.807619e-02	ci left: 7.440107e-03	ci right 7.886781e-03	k: 4520	n:590000
INPP5D   590000 perm   252 sec   (2337 perm/sec)   p_kst 7.661017e-03   p_cons 3.423729e-04   p_joint 7.796610e-05

Joint ci ratio: 5.717679e-01	ci left: 5.613017e-05	ci right 1.022613e-04	k: 46	n:600000
Cons ci ratio: 2.730722e-01	ci left: 2.965005e-04	ci right 3.917662e-04	k: 205	n:600000
KS ci ratio: 5.755001e-02	ci left: 7.452440e-03	ci right 7.895666e-03	k: 4603	n:600000
INPP5D   600000 perm   259 sec   (2318 perm/sec)   p_kst 7.671667e-03   p_cons 3.416667e-04   p_joint 7.666667e-05

Joint ci ratio: 5.657805e-01	ci left: 5.661337e-05	ci right 1.024578e-04	k: 47	n:610000
Cons ci ratio: 2.691797e-01	ci left: 3.008074e-04	ci right 3.958467e-04	k: 211	n:610000
KS ci ratio: 5.709929e-02	ci left: 7.448226e-03	ci right 7.887617e-03	k: 4676	n:610000
INPP5D   610000 perm   265 sec   (2299 perm/sec)   p_kst 7.665574e-03   p_cons 3.459016e-04   p_joint 7.704918e-05

Joint ci ratio: 5.657809e-01	ci left: 5.570024e-05	ci right 1.008053e-04	k: 47	n:620000
Cons ci ratio: 2.672952e-01	ci left: 3.004690e-04	ci right 3.946255e-04	k: 214	n:620000
KS ci ratio: 5.659300e-02	ci left: 7.461652e-03	ci right 7.897805e-03	k: 4760	n:620000
INPP5D   620000 perm   272 sec   (2278 perm/sec)   p_kst 7.677419e-03   p_cons 3.451613e-04   p_joint 7.580645e-05

Joint ci ratio: 5.599778e-01	ci left: 5.617736e-05	ci right 1.010163e-04	k: 48	n:630000
Cons ci ratio: 2.672959e-01	ci left: 2.956996e-04	ci right 3.883617e-04	k: 214	n:630000
KS ci ratio: 5.615838e-02	ci left: 7.459018e-03	ci right 7.891560e-03	k: 4834	n:630000
INPP5D   630000 perm   279 sec   (2260 perm/sec)   p_kst 7.673016e-03   p_cons 3.396825e-04   p_joint 7.619048e-05

Joint ci ratio: 5.657816e-01	ci left: 5.395960e-05	ci right 9.765512e-05	k: 47	n:640000
Cons ci ratio: 2.624567e-01	ci left: 3.027495e-04	ci right 3.956214e-04	k: 222	n:640000
KS ci ratio: 5.565370e-02	ci left: 7.478050e-03	ci right 7.907674e-03	k: 4922	n:640000
INPP5D   640000 perm   285 sec   (2242 perm/sec)   p_kst 7.690625e-03   p_cons 3.468750e-04   p_joint 7.343750e-05

Joint ci ratio: 5.599785e-01	ci left: 5.444881e-05	ci right 9.790811e-05	k: 48	n:650000
Cons ci ratio: 2.601339e-01	ci left: 3.038427e-04	ci right 3.960908e-04	k: 226	n:650000
KS ci ratio: 5.521237e-02	ci left: 7.482858e-03	ci right 7.909240e-03	k: 5001	n:650000
INPP5D   650000 perm   293 sec   (2221 perm/sec)   p_kst 7.693846e-03   p_cons 3.476923e-04   p_joint 7.384615e-05

Joint ci ratio: 5.717700e-01	ci left: 5.102738e-05	ci right 9.296491e-05	k: 46	n:660000
Cons ci ratio: 2.584319e-01	ci left: 3.034891e-04	ci right 3.949297e-04	k: 229	n:660000
KS ci ratio: 5.476509e-02	ci left: 7.492016e-03	ci right 7.915352e-03	k: 5083	n:660000
INPP5D   660000 perm   300 sec   (2203 perm/sec)   p_kst 7.701515e-03   p_cons 3.469697e-04   p_joint 6.969697e-05

Joint ci ratio: 5.779522e-01	ci left: 4.899042e-05	ci right 8.986994e-05	k: 45	n:670000
Cons ci ratio: 2.578724e-01	ci left: 3.003553e-04	ci right 3.906242e-04	k: 230	n:670000
KS ci ratio: 5.429145e-02	ci left: 7.511222e-03	ci right 7.931857e-03	k: 5172	n:670000
INPP5D   670000 perm   307 sec   (2186 perm/sec)   p_kst 7.719403e-03   p_cons 3.432836e-04   p_joint 6.716418e-05

Joint ci ratio: 5.657829e-01	ci left: 5.078548e-05	ci right 9.191077e-05	k: 47	n:680000
Cons ci ratio: 2.556682e-01	ci left: 3.014421e-04	ci right 3.911398e-04	k: 234	n:680000
KS ci ratio: 5.393846e-02	ci left: 7.499408e-03	ci right 7.916567e-03	k: 5240	n:680000
INPP5D   680000 perm   314 sec   (2168 perm/sec)   p_kst 7.705882e-03   p_cons 3.441176e-04   p_joint 6.911765e-05

Joint ci ratio: 5.657832e-01	ci left: 5.004945e-05	ci right 9.057875e-05	k: 47	n:690000
Cons ci ratio: 2.529907e-01	ci left: 3.038579e-04	ci right 3.931783e-04	k: 239	n:690000
KS ci ratio: 5.348071e-02	ci left: 7.519406e-03	ci right 7.934018e-03	k: 5330	n:690000
INPP5D   690000 perm   321 sec   (2151 perm/sec)   p_kst 7.724638e-03   p_cons 3.463768e-04   p_joint 6.811594e-05

Joint ci ratio: 6.358903e-01	ci left: 3.721657e-05	ci right 7.285588e-05	k: 37	n:700000
Cons ci ratio: 2.509084e-01	ci left: 3.048706e-04	ci right 3.936358e-04	k: 243	n:700000
KS ci ratio: 5.310357e-02	ci left: 7.519111e-03	ci right 7.930693e-03	k: 5406	n:700000
INPP5D   700000 perm   328 sec   (2135 perm/sec)   p_kst 7.722857e-03   p_cons 3.471429e-04   p_joint 5.285714e-05

Joint ci ratio: 6.276847e-01	ci left: 3.787500e-05	ci right 7.346120e-05	k: 38	n:710000
Cons ci ratio: 2.498866e-01	ci left: 3.032168e-04	ci right 3.910850e-04	k: 245	n:710000
KS ci ratio: 5.267141e-02	ci left: 7.536904e-03	ci right 7.946001e-03	k: 5495	n:710000
INPP5D   710000 perm   335 sec   (2119 perm/sec)   p_kst 7.739437e-03   p_cons 3.450704e-04   p_joint 5.352113e-05

Joint ci ratio: 6.625844e-01	ci left: 3.270298e-05	ci right 6.598770e-05	k: 34	n:720000
Cons ci ratio: 2.478794e-01	ci left: 3.042145e-04	ci right 3.915546e-04	k: 249	n:720000
KS ci ratio: 5.231102e-02	ci left: 7.536395e-03	ci right 7.942581e-03	k: 5571	n:720000
INPP5D   720000 perm   342 sec   (2103 perm/sec)   p_kst 7.737500e-03   p_cons 3.458333e-04   p_joint 4.722222e-05

Joint ci ratio: 6.625846e-01	ci left: 3.225499e-05	ci right 6.508377e-05	k: 34	n:730000
Cons ci ratio: 2.449569e-01	ci left: 3.077590e-04	ci right 3.949164e-04	k: 255	n:730000
KS ci ratio: 5.192088e-02	ci left: 7.546727e-03	ci right 7.950345e-03	k: 5655	n:730000
INPP5D   730000 perm   350 sec   (2087 perm/sec)   p_kst 7.746575e-03   p_cons 3.493151e-04   p_joint 4.657534e-05

Joint ci ratio: 6.444275e-01	ci left: 3.407314e-05	ci right 6.734961e-05	k: 36	n:740000
Cons ci ratio: 2.421354e-01	ci left: 3.112135e-04	ci right 3.981816e-04	k: 261	n:740000
KS ci ratio: 5.153482e-02	ci left: 7.558124e-03	ci right 7.959257e-03	k: 5740	n:740000
INPP5D   740000 perm   357 sec   (2071 perm/sec)   p_kst 7.756757e-03   p_cons 3.527027e-04   p_joint 4.864865e-05

Joint ci ratio: 6.533172e-01	ci left: 3.250525e-05	ci right 6.490144e-05	k: 35	n:750000
Cons ci ratio: 2.389636e-01	ci left: 3.158349e-04	ci right 4.027671e-04	k: 268	n:750000
KS ci ratio: 5.120155e-02	ci left: 7.556065e-03	ci right 7.954418e-03	k: 5815	n:750000
INPP5D   750000 perm   365 sec   (2054 perm/sec)   p_kst 7.753333e-03   p_cons 3.573333e-04   p_joint 4.666667e-05

Joint ci ratio: 6.533174e-01	ci left: 3.207755e-05	ci right 6.404749e-05	k: 35	n:760000
Cons ci ratio: 2.359133e-01	ci left: 3.203419e-04	ci right 4.072249e-04	k: 275	n:760000
KS ci ratio: 5.086161e-02	ci left: 7.557965e-03	ci right 7.953696e-03	k: 5893	n:760000
INPP5D   760000 perm   373 sec   (2037 perm/sec)   p_kst 7.753947e-03   p_cons 3.618421e-04   p_joint 4.605263e-05

Joint ci ratio: 6.533176e-01	ci left: 3.166095e-05	ci right 6.321571e-05	k: 35	n:770000
Cons ci ratio: 2.350634e-01	ci left: 3.186257e-04	ci right 4.046867e-04	k: 277	n:770000
KS ci ratio: 5.050705e-02	ci left: 7.566236e-03	ci right 7.959558e-03	k: 5976	n:770000
INPP5D   770000 perm   381 sec   (2022 perm/sec)   p_kst 7.761039e-03   p_cons 3.597403e-04   p_joint 4.545455e-05

Joint ci ratio: 6.533178e-01	ci left: 3.125504e-05	ci right 6.240526e-05	k: 35	n:780000
Cons ci ratio: 2.342226e-01	ci left: 3.169541e-04	ci right 4.022130e-04	k: 279	n:780000
KS ci ratio: 5.018485e-02	ci left: 7.566709e-03	ci right 7.957473e-03	k: 6053	n:780000
INPP5D   780000 perm   389 sec   (2007 perm/sec)   p_kst 7.760256e-03   p_cons 3.576923e-04   p_joint 4.487179e-05

Joint ci ratio: 6.444285e-01	ci left: 3.191660e-05	ci right 6.308701e-05	k: 36	n:790000
Cons ci ratio: 2.329779e-01	ci left: 3.165173e-04	ci right 4.011410e-04	k: 282	n:790000
KS ci ratio: 4.988103e-02	ci left: 7.563426e-03	ci right 7.951589e-03	k: 6127	n:790000
INPP5D   790000 perm   396 sec   (1993 perm/sec)   p_kst 7.755696e-03   p_cons 3.569620e-04   p_joint 4.556962e-05

Joint ci ratio: 6.444287e-01	ci left: 3.151764e-05	ci right 6.229843e-05	k: 36	n:800000
Cons ci ratio: 2.313486e-01	ci left: 3.172700e-04	ci right 4.014170e-04	k: 286	n:800000
KS ci ratio: 4.959879e-02	ci left: 7.555294e-03	ci right 7.940783e-03	k: 6197	n:800000
INPP5D   800000 perm   404 sec   (1978 perm/sec)   p_kst 7.746250e-03   p_cons 3.575000e-04   p_joint 4.500000e-05

Joint ci ratio: 6.444289e-01	ci left: 3.112853e-05	ci right 6.152932e-05	k: 36	n:810000
Cons ci ratio: 2.305470e-01	ci left: 3.156794e-04	ci right 3.990730e-04	k: 288	n:810000
KS ci ratio: 4.930940e-02	ci left: 7.551028e-03	ci right 7.933987e-03	k: 6270	n:810000
INPP5D   810000 perm   412 sec   (1964 perm/sec)   p_kst 7.740741e-03   p_cons 3.555556e-04   p_joint 4.444444e-05

Joint ci ratio: 6.444291e-01	ci left: 3.074891e-05	ci right 6.077897e-05	k: 36	n:820000
Cons ci ratio: 2.293597e-01	ci left: 3.152774e-04	ci right 3.980752e-04	k: 291	n:820000
KS ci ratio: 4.900944e-02	ci left: 7.551690e-03	ci right 7.932287e-03	k: 6347	n:820000
INPP5D   820000 perm   420 sec   (1950 perm/sec)   p_kst 7.740244e-03   p_cons 3.548780e-04   p_joint 4.390244e-05

Joint ci ratio: 6.276872e-01	ci left: 3.239907e-05	ci right 6.284039e-05	k: 38	n:830000
Cons ci ratio: 2.274206e-01	ci left: 3.171584e-04	ci right 3.996473e-04	k: 296	n:830000
KS ci ratio: 4.868436e-02	ci left: 7.561866e-03	ci right 7.940377e-03	k: 6432	n:830000
INPP5D   830000 perm   429 sec   (1936 perm/sec)   p_kst 7.749398e-03   p_cons 3.566265e-04   p_joint 4.578313e-05

Joint ci ratio: 6.276874e-01	ci left: 3.201336e-05	ci right 6.209230e-05	k: 38	n:840000
Cons ci ratio: 2.266590e-01	ci left: 3.156282e-04	ci right 3.974057e-04	k: 298	n:840000
KS ci ratio: 4.836192e-02	ci left: 7.572984e-03	ci right 7.949470e-03	k: 6518	n:840000
INPP5D   840000 perm   437 sec   (1923 perm/sec)   p_kst 7.759524e-03   p_cons 3.547619e-04   p_joint 4.523810e-05

Joint ci ratio: 6.276876e-01	ci left: 3.163673e-05	ci right 6.136181e-05	k: 38	n:850000
Cons ci ratio: 2.251578e-01	ci left: 3.163545e-04	ci right 3.977021e-04	k: 302	n:850000
KS ci ratio: 4.806047e-02	ci left: 7.579198e-03	ci right 7.953580e-03	k: 6600	n:850000
INPP5D   850000 perm   446 sec   (1908 perm/sec)   p_kst 7.764706e-03   p_cons 3.552941e-04   p_joint 4.470588e-05

Joint ci ratio: 6.276878e-01	ci left: 3.126886e-05	ci right 6.064830e-05	k: 38	n:860000
Cons ci ratio: 2.240515e-01	ci left: 3.159681e-04	ci right 3.967620e-04	k: 305	n:860000
KS ci ratio: 4.775739e-02	ci left: 7.587573e-03	ci right 7.959940e-03	k: 6684	n:860000
INPP5D   860000 perm   455 sec   (1891 perm/sec)   p_kst 7.772093e-03   p_cons 3.546512e-04   p_joint 4.418605e-05

Joint ci ratio: 6.048542e-01	ci left: 3.381895e-05	ci right 6.393180e-05	k: 41	n:870000
Cons ci ratio: 2.218864e-01	ci left: 3.188477e-04	ci right 3.994825e-04	k: 311	n:870000
KS ci ratio: 4.750597e-02	ci left: 7.580996e-03	ci right 7.951028e-03	k: 6755	n:870000
INPP5D   870000 perm   464 sec   (1877 perm/sec)   p_kst 7.764368e-03   p_cons 3.574713e-04   p_joint 4.712644e-05

Joint ci ratio: 5.977795e-01	ci left: 3.439783e-05	ci right 6.451287e-05	k: 42	n:880000
Cons ci ratio: 2.197828e-01	ci left: 3.216656e-04	ci right 4.021376e-04	k: 317	n:880000
KS ci ratio: 4.720276e-02	ci left: 7.592542e-03	ci right 7.960709e-03	k: 6842	n:880000
INPP5D   880000 perm   472 sec   (1863 perm/sec)   p_kst 7.775000e-03   p_cons 3.602273e-04   p_joint 4.772727e-05

Joint ci ratio: 5.843440e-01	ci left: 3.592210e-05	ci right 6.636792e-05	k: 44	n:890000
Cons ci ratio: 2.167365e-01	ci left: 3.276111e-04	ci right 4.082833e-04	k: 326	n:890000
KS ci ratio: 4.694285e-02	ci left: 7.591621e-03	ci right 7.957661e-03	k: 6918	n:890000
INPP5D   890000 perm   481 sec   (1851 perm/sec)   p_kst 7.773034e-03   p_cons 3.662921e-04   p_joint 4.943820e-05

Joint ci ratio: 5.843442e-01	ci left: 3.552296e-05	ci right 6.563050e-05	k: 44	n:900000
Cons ci ratio: 2.147748e-01	ci left: 3.302775e-04	ci right 4.107731e-04	k: 332	n:900000
KS ci ratio: 4.667037e-02	ci left: 7.596217e-03	ci right 7.960295e-03	k: 6999	n:900000
INPP5D   900000 perm   490 sec   (1837 perm/sec)   p_kst 7.776667e-03   p_cons 3.688889e-04   p_joint 4.888889e-05

Joint ci ratio: 5.843443e-01	ci left: 3.513259e-05	ci right 6.490929e-05	k: 44	n:910000
Cons ci ratio: 2.134963e-01	ci left: 3.308079e-04	ci right 4.108901e-04	k: 336	n:910000
KS ci ratio: 4.640259e-02	ci left: 7.600718e-03	ci right 7.962866e-03	k: 7080	n:910000
INPP5D   910000 perm   499 sec   (1824 perm/sec)   p_kst 7.780220e-03   p_cons 3.692308e-04   p_joint 4.835165e-05

Joint ci ratio: 5.843445e-01	ci left: 3.475072e-05	ci right 6.420376e-05	k: 44	n:920000
Cons ci ratio: 2.119298e-01	ci left: 3.323575e-04	ci right 4.121477e-04	k: 341	n:920000
KS ci ratio: 4.614586e-02	ci left: 7.602977e-03	ci right 7.963176e-03	k: 7159	n:920000
INPP5D   920000 perm   508 sec   (1812 perm/sec)   p_kst 7.781522e-03   p_cons 3.706522e-04   p_joint 4.782609e-05

Joint ci ratio: 5.843446e-01	ci left: 3.437705e-05	ci right 6.351341e-05	k: 44	n:930000
Cons ci ratio: 2.110064e-01	ci left: 3.318387e-04	ci right 4.111124e-04	k: 344	n:930000
KS ci ratio: 4.591572e-02	ci left: 7.597753e-03	ci right 7.955861e-03	k: 7231	n:930000
INPP5D   930000 perm   517 sec   (1799 perm/sec)   p_kst 7.775269e-03   p_cons 3.698925e-04   p_joint 4.731183e-05

Joint ci ratio: 5.843448e-01	ci left: 3.401134e-05	ci right 6.283774e-05	k: 44	n:940000
Cons ci ratio: 2.088975e-01	ci left: 3.353639e-04	ci right 4.145766e-04	k: 351	n:940000
KS ci ratio: 4.567639e-02	ci left: 7.596851e-03	ci right 7.953001e-03	k: 7307	n:940000
INPP5D   940000 perm   526 sec   (1788 perm/sec)   p_kst 7.773404e-03   p_cons 3.734043e-04   p_joint 4.680851e-05

Joint ci ratio: 5.779582e-01	ci left: 3.455105e-05	ci right 6.338217e-05	k: 45	n:950000
Cons ci ratio: 2.086017e-01	ci left: 3.328313e-04	ci right 4.113202e-04	k: 352	n:950000
KS ci ratio: 4.540669e-02	ci left: 7.607421e-03	ci right 7.961906e-03	k: 7394	n:950000
INPP5D   950000 perm   535 sec   (1775 perm/sec)   p_kst 7.783158e-03   p_cons 3.705263e-04   p_joint 4.736842e-05

Joint ci ratio: 5.779583e-01	ci left: 3.419115e-05	ci right 6.272194e-05	k: 45	n:960000
Cons ci ratio: 2.071397e-01	ci left: 3.343016e-04	ci right 4.125147e-04	k: 357	n:960000
KS ci ratio: 4.513867e-02	ci left: 7.618807e-03	ci right 7.971673e-03	k: 7482	n:960000
INPP5D   960000 perm   544 sec   (1763 perm/sec)   p_kst 7.793750e-03   p_cons 3.718750e-04   p_joint 4.687500e-05

Joint ci ratio: 5.779585e-01	ci left: 3.383866e-05	ci right 6.207533e-05	k: 45	n:970000
Cons ci ratio: 2.062773e-01	ci left: 3.337878e-04	ci right 4.115146e-04	k: 360	n:970000
KS ci ratio: 4.490224e-02	ci left: 7.620789e-03	ci right 7.971850e-03	k: 7561	n:970000
INPP5D   970000 perm   554 sec   (1752 perm/sec)   p_kst 7.794845e-03   p_cons 3.711340e-04   p_joint 4.639175e-05

Joint ci ratio: 5.717768e-01	ci left: 3.436528e-05	ci right 6.260926e-05	k: 46	n:980000
Cons ci ratio: 2.051439e-01	ci left: 3.342532e-04	ci right 4.116071e-04	k: 364	n:980000
KS ci ratio: 4.463712e-02	ci left: 7.633836e-03	ci right 7.983368e-03	k: 7651	n:980000
INPP5D   980000 perm   564 sec   (1739 perm/sec)   p_kst 7.807143e-03   p_cons 3.714286e-04   p_joint 4.693878e-05

Joint ci ratio: 3.720489e-01	ci left: 9.132068e-05	ci right 1.339174e-04	k: 110	n:990000
Cons ci ratio: 2.040289e-01	ci left: 3.347104e-04	ci right 4.116965e-04	k: 368	n:990000
KS ci ratio: 4.444613e-02	ci left: 7.622650e-03	ci right 7.970138e-03	k: 7717	n:990000
INPP5D   990000 perm   573 sec   (1728 perm/sec)   p_kst 7.794949e-03   p_cons 3.717172e-04   p_joint 1.111111e-04

Joint ci ratio: 3.771816e-01	ci left: 8.768989e-05	ci right 1.292971e-04	k: 107	n:1000000
Cons ci ratio: 2.032046e-01	ci left: 3.342103e-04	ci right 4.107323e-04	k: 371	n:1000000
KS ci ratio: 4.423467e-02	ci left: 7.619603e-03	ci right 7.965258e-03	k: 7791	n:1000000
INPP5D   1000000 perm   583 sec   (1715 perm/sec)   p_kst 7.791000e-03   p_cons 3.710000e-04   p_joint 1.070000e-04

Joint ci ratio: 3.737368e-01	ci left: 8.861501e-05	ci right 1.301831e-04	k: 109	n:1010000
Cons ci ratio: 2.029323e-01	ci left: 3.318410e-04	ci right 4.077061e-04	k: 372	n:1010000
KS ci ratio: 4.402337e-02	ci left: 7.617599e-03	ci right 7.961471e-03	k: 7866	n:1010000
INPP5D   1010000 perm   592 sec   (1705 perm/sec)   p_kst 7.788119e-03   p_cons 3.683168e-04   p_joint 1.079208e-04

Joint ci ratio: 2.962986e-01	ci left: 1.461841e-04	ci right 1.979009e-04	k: 174	n:1020000
Cons ci ratio: 2.005270e-01	ci left: 3.369656e-04	ci right 4.129775e-04	k: 381	n:1020000
KS ci ratio: 4.378452e-02	ci left: 7.626305e-03	ci right 7.968655e-03	k: 7952	n:1020000
INPP5D   1020000 perm   602 sec   (1694 perm/sec)   p_kst 7.796078e-03   p_cons 3.735294e-04   p_joint 1.705882e-04

Joint ci ratio: 2.929690e-01	ci left: 1.483614e-04	ci right 2.001492e-04	k: 178	n:1030000
Cons ci ratio: 1.997443e-01	ci left: 3.364608e-04	ci right 4.120264e-04	k: 384	n:1030000
KS ci ratio: 4.354679e-02	ci left: 7.635808e-03	ci right 7.976677e-03	k: 8039	n:1030000
INPP5D   1030000 perm   612 sec   (1682 perm/sec)   p_kst 7.804854e-03   p_cons 3.728155e-04   p_joint 1.728155e-04

Joint ci ratio: 2.913458e-01	ci left: 1.487170e-04	ci right 2.002883e-04	k: 180	n:1040000
Cons ci ratio: 1.982056e-01	ci left: 3.387074e-04	ci right 4.141208e-04	k: 390	n:1040000
KS ci ratio: 4.333708e-02	ci left: 7.636572e-03	ci right 7.975793e-03	k: 8117	n:1040000
INPP5D   1040000 perm   622 sec   (1672 perm/sec)   p_kst 7.804808e-03   p_cons 3.750000e-04   p_joint 1.730769e-04

Joint ci ratio: 3.098795e-01	ci left: 1.288072e-04	ci right 1.768787e-04	k: 159	n:1050000
Cons ci ratio: 1.977007e-01	ci left: 3.372920e-04	ci right 4.121759e-04	k: 392	n:1050000
KS ci ratio: 4.311447e-02	ci left: 7.642979e-03	ci right 7.980697e-03	k: 8201	n:1050000
INPP5D   1050000 perm   632 sec   (1662 perm/sec)   p_kst 7.810476e-03   p_cons 3.733333e-04   p_joint 1.514286e-04

Joint ci ratio: 1.949900e-01	ci left: 3.439773e-04	ci right 4.191741e-04	k: 403	n:1060000
Cons ci ratio: 1.962084e-01	ci left: 3.394913e-04	ci right 4.142265e-04	k: 398	n:1060000
KS ci ratio: 4.289787e-02	ci left: 7.648336e-03	ci right 7.984551e-03	k: 8284	n:1060000
INPP5D   1060000 perm   642 sec   (1652 perm/sec)   p_kst 7.815094e-03   p_cons 3.754717e-04   p_joint 3.801887e-04

Joint ci ratio: 1.947494e-01	ci left: 3.416515e-04	ci right 4.162368e-04	k: 404	n:1070000
Cons ci ratio: 1.949904e-01	ci left: 3.407625e-04	ci right 4.152567e-04	k: 403	n:1070000
KS ci ratio: 4.264599e-02	ci left: 7.667467e-03	ci right 8.002495e-03	k: 8382	n:1070000
INPP5D   1070000 perm   652 sec   (1641 perm/sec)   p_kst 7.833645e-03   p_cons 3.766355e-04   p_joint 3.775701e-04

Joint ci ratio: 2.054291e-01	ci left: 3.024250e-04	ci right 3.725226e-04	k: 363	n:1080000
Cons ci ratio: 1.937947e-01	ci left: 3.420117e-04	ci right 4.162663e-04	k: 408	n:1080000
KS ci ratio: 4.243381e-02	ci left: 7.673423e-03	ci right 8.007002e-03	k: 8466	n:1080000
INPP5D   1080000 perm   662 sec   (1632 perm/sec)   p_kst 7.838889e-03   p_cons 3.777778e-04   p_joint 3.361111e-04

Joint ci ratio: 2.043095e-01	ci left: 3.031319e-04	ci right 3.729626e-04	k: 367	n:1090000
Cons ci ratio: 1.937951e-01	ci left: 3.388739e-04	ci right 4.124475e-04	k: 408	n:1090000
KS ci ratio: 4.227712e-02	ci left: 7.660210e-03	ci right 7.991955e-03	k: 8529	n:1090000
INPP5D   1090000 perm   672 sec   (1622 perm/sec)   p_kst 7.824771e-03   p_cons 3.743119e-04   p_joint 3.366972e-04

Joint ci ratio: 2.040327e-01	ci left: 3.012388e-04	ci right 3.705276e-04	k: 368	n:1100000
Cons ci ratio: 1.935588e-01	ci left: 3.366582e-04	ci right 4.096511e-04	k: 409	n:1100000
KS ci ratio: 4.205561e-02	ci left: 7.671528e-03	ci right 8.001981e-03	k: 8619	n:1100000
INPP5D   1100000 perm   682 sec   (1612 perm/sec)   p_kst 7.835455e-03   p_cons 3.718182e-04   p_joint 3.345455e-04

Joint ci ratio: 1.566305e-01	ci left: 5.197901e-04	ci right 6.089756e-04	k: 625	n:1110000
Cons ci ratio: 1.921577e-01	ci left: 3.387697e-04	ci right 4.116266e-04	k: 415	n:1110000
KS ci ratio: 4.186662e-02	ci left: 7.671948e-03	ci right 8.000898e-03	k: 8697	n:1110000
INPP5D   1110000 perm   693 sec   (1602 perm/sec)   p_kst 7.835135e-03   p_cons 3.738739e-04   p_joint 5.630631e-04

Joint ci ratio: 1.557619e-01	ci left: 5.211549e-04	ci right 6.100324e-04	k: 632	n:1120000
Cons ci ratio: 1.910131e-01	ci left: 3.399951e-04	ci right 4.126295e-04	k: 420	n:1120000
KS ci ratio: 4.168495e-02	ci left: 7.670597e-03	ci right 7.998028e-03	k: 8773	n:1120000
INPP5D   1120000 perm   703 sec   (1593 perm/sec)   p_kst 7.833036e-03   p_cons 3.750000e-04   p_joint 5.642857e-04

Joint ci ratio: 1.549077e-01	ci left: 5.224968e-04	ci right 6.110691e-04	k: 639	n:1130000
Cons ci ratio: 1.905612e-01	ci left: 3.386717e-04	ci right 4.108323e-04	k: 422	n:1130000
KS ci ratio: 4.149381e-02	ci left: 7.673652e-03	ci right 7.999675e-03	k: 8854	n:1130000
INPP5D   1130000 perm   713 sec   (1584 perm/sec)   p_kst 7.835398e-03   p_cons 3.734513e-04   p_joint 5.654867e-04

Joint ci ratio: 1.572613e-01	ci left: 5.018974e-04	ci right 5.883923e-04	k: 620	n:1140000
Cons ci ratio: 1.894447e-01	ci left: 3.398783e-04	ci right 4.118228e-04	k: 427	n:1140000
KS ci ratio: 4.134493e-02	ci left: 7.661897e-03	ci right 7.986225e-03	k: 8918	n:1140000
INPP5D   1140000 perm   724 sec   (1575 perm/sec)   p_kst 7.822807e-03   p_cons 3.745614e-04   p_joint 5.438596e-04

Joint ci ratio: 1.368435e-01	ci left: 6.642439e-04	ci right 7.626467e-04	k: 819	n:1150000
Cons ci ratio: 1.885656e-01	ci left: 3.402365e-04	ci right 4.118844e-04	k: 431	n:1150000
KS ci ratio: 4.113538e-02	ci left: 7.673587e-03	ci right 7.996725e-03	k: 9009	n:1150000
INPP5D   1150000 perm   734 sec   (1567 perm/sec)   p_kst 7.833913e-03   p_cons 3.747826e-04   p_joint 7.121739e-04

Joint ci ratio: 1.364283e-01	ci left: 6.626806e-04	ci right 7.605298e-04	k: 824	n:1160000
Cons ci ratio: 1.876986e-01	ci left: 3.405893e-04	ci right 4.119441e-04	k: 435	n:1160000
KS ci ratio: 4.096075e-02	ci left: 7.673133e-03	ci right 7.994848e-03	k: 9086	n:1160000
INPP5D   1160000 perm   745 sec   (1558 perm/sec)   p_kst 7.832759e-03   p_cons 3.750000e-04   p_joint 7.103448e-04

Joint ci ratio: 1.439591e-01	ci left: 5.877365e-04	ci right 6.797220e-04	k: 740	n:1170000
Cons ci ratio: 1.876989e-01	ci left: 3.376782e-04	ci right 4.084233e-04	k: 435	n:1170000
KS ci ratio: 4.078384e-02	ci left: 7.674383e-03	ci right 7.994728e-03	k: 9165	n:1170000
INPP5D   1170000 perm   755 sec   (1549 perm/sec)   p_kst 7.833333e-03   p_cons 3.717949e-04   p_joint 6.324786e-04

Joint ci ratio: 1.431882e-01	ci left: 5.892918e-04	ci right 6.809846e-04	k: 748	n:1180000
Cons ci ratio: 1.855822e-01	ci left: 3.428953e-04	ci right 4.138320e-04	k: 445	n:1180000
KS ci ratio: 4.059371e-02	ci left: 7.681486e-03	ci right 8.000598e-03	k: 9251	n:1180000
INPP5D   1180000 perm   766 sec   (1540 perm/sec)   p_kst 7.839831e-03   p_cons 3.771186e-04   p_joint 6.338983e-04

Joint ci ratio: 1.170249e-01	ci left: 8.868803e-04	ci right 9.979248e-04	k: 1120	n:1190000
Cons ci ratio: 1.843462e-01	ci left: 3.448224e-04	ci right 4.156296e-04	k: 451	n:1190000
KS ci ratio: 4.042805e-02	ci left: 7.680154e-03	ci right 7.997879e-03	k: 9327	n:1190000
INPP5D   1190000 perm   777 sec   (1531 perm/sec)   p_kst 7.837815e-03   p_cons 3.789916e-04   p_joint 9.411765e-04

Joint ci ratio: 1.165064e-01	ci left: 8.875796e-04	ci right 9.981853e-04	k: 1130	n:1200000
Cons ci ratio: 1.835359e-01	ci left: 3.451287e-04	ci right 4.156527e-04	k: 455	n:1200000
KS ci ratio: 4.024930e-02	ci left: 7.684622e-03	ci right 8.001093e-03	k: 9410	n:1200000
INPP5D   1200000 perm   788 sec   (1523 perm/sec)   p_kst 7.841667e-03   p_cons 3.791667e-04   p_joint 9.416667e-04

Joint ci ratio: 1.160456e-01	ci left: 8.874659e-04	ci right 9.975901e-04	k: 1139	n:1210000
Cons ci ratio: 1.829351e-01	ci left: 3.446420e-04	ci right 4.148105e-04	k: 458	n:1210000
KS ci ratio: 4.009206e-02	ci left: 7.681656e-03	ci right 7.996740e-03	k: 9484	n:1210000
INPP5D   1210000 perm   799 sec   (1515 perm/sec)   p_kst 7.838017e-03   p_cons 3.785124e-04   p_joint 9.413223e-04

Joint ci ratio: 1.157922e-01	ci left: 8.841710e-04	ci right 9.936304e-04	k: 1144	n:1220000
Cons ci ratio: 1.823403e-01	ci left: 3.441637e-04	ci right 4.139817e-04	k: 461	n:1220000
KS ci ratio: 3.991561e-02	ci left: 7.686855e-03	ci right 8.000734e-03	k: 9568	n:1220000
INPP5D   1220000 perm   810 sec   (1506 perm/sec)   p_kst 7.842623e-03   p_cons 3.778689e-04   p_joint 9.377049e-04

Joint ci ratio: 1.153898e-01	ci left: 8.832986e-04	ci right 9.922441e-04	k: 1152	n:1230000
Cons ci ratio: 1.815560e-01	ci left: 3.444695e-04	ci right 4.140160e-04	k: 465	n:1230000
KS ci ratio: 3.973524e-02	ci left: 7.694389e-03	ci right 8.007123e-03	k: 9655	n:1230000
INPP5D   1230000 perm   821 sec   (1498 perm/sec)   p_kst 7.849593e-03   p_cons 3.780488e-04   p_joint 9.365854e-04

Joint ci ratio: 1.150909e-01	ci left: 8.808744e-04	ci right 9.892204e-04	k: 1158	n:1240000
Cons ci ratio: 1.802073e-01	ci left: 3.470812e-04	ci right 4.165776e-04	k: 472	n:1240000
KS ci ratio: 3.956344e-02	ci left: 7.699408e-03	ci right 8.010962e-03	k: 9739	n:1240000
INPP5D   1240000 perm   833 sec   (1489 perm/sec)   p_kst 7.854032e-03   p_cons 3.806452e-04   p_joint 9.338710e-04

Joint ci ratio: 1.144507e-01	ci left: 8.839289e-04	ci right 9.920049e-04	k: 1171	n:1250000
Cons ci ratio: 1.796386e-01	ci left: 3.465964e-04	ci right 4.157530e-04	k: 475	n:1250000
KS ci ratio: 3.943027e-02	ci left: 7.690090e-03	ci right 8.000197e-03	k: 9805	n:1250000
INPP5D   1250000 perm   844 sec   (1481 perm/sec)   p_kst 7.844000e-03   p_cons 3.800000e-04   p_joint 9.368000e-04

Joint ci ratio: 1.142075e-01	ci left: 8.807683e-04	ci right 9.882137e-04	k: 1176	n:1260000
Cons ci ratio: 1.790753e-01	ci left: 3.461197e-04	ci right 4.149411e-04	k: 478	n:1260000
KS ci ratio: 3.929443e-02	ci left: 7.682494e-03	ci right 7.991203e-03	k: 9873	n:1260000
INPP5D   1260000 perm   855 sec   (1473 perm/sec)   p_kst 7.835714e-03   p_cons 3.793651e-04   p_joint 9.333333e-04

Joint ci ratio: 1.136296e-01	ci left: 8.830128e-04	ci right 9.901503e-04	k: 1188	n:1270000
Cons ci ratio: 1.785172e-01	ci left: 3.456508e-04	ci right 4.141417e-04	k: 481	n:1270000
KS ci ratio: 3.914609e-02	ci left: 7.680478e-03	ci right 7.987914e-03	k: 9948	n:1270000
INPP5D   1270000 perm   867 sec   (1465 perm/sec)   p_kst 7.833071e-03   p_cons 3.787402e-04   p_joint 9.354331e-04

Joint ci ratio: 1.130133e-01	ci left: 8.859827e-04	ci right 9.928587e-04	k: 1201	n:1280000
Cons ci ratio: 1.775983e-01	ci left: 3.466826e-04	ci right 4.149863e-04	k: 486	n:1280000
KS ci ratio: 3.899158e-02	ci left: 7.681590e-03	ci right 7.987830e-03	k: 10027	n:1280000
INPP5D   1280000 perm   878 sec   (1457 perm/sec)   p_kst 7.833594e-03   p_cons 3.796875e-04   p_joint 9.382812e-04

Joint ci ratio: 1.011888e-01	ci left: 1.103205e-03	ci right 1.221534e-03	k: 1498	n:1290000
Cons ci ratio: 1.766935e-01	ci left: 3.476993e-04	ci right 4.158170e-04	k: 491	n:1290000
KS ci ratio: 3.882340e-02	ci left: 7.688830e-03	ci right 7.994006e-03	k: 10114	n:1290000
INPP5D   1290000 perm   890 sec   (1450 perm/sec)   p_kst 7.840310e-03   p_cons 3.806202e-04   p_joint 1.161240e-03

Joint ci ratio: 1.007195e-01	ci left: 1.105216e-03	ci right 1.223179e-03	k: 1512	n:1300000
Cons ci ratio: 1.759795e-01	ci left: 3.479658e-04	ci right 4.158310e-04	k: 495	n:1300000
KS ci ratio: 3.867458e-02	ci left: 7.689103e-03	ci right 7.993095e-03	k: 10192	n:1300000
INPP5D   1300000 perm   902 sec   (1442 perm/sec)   p_kst 7.840000e-03   p_cons 3.807692e-04   p_joint 1.163077e-03

Joint ci ratio: 1.011560e-01	ci left: 1.087105e-03	ci right 1.203668e-03	k: 1499	n:1310000
Cons ci ratio: 1.752742e-01	ci left: 3.482288e-04	ci right 4.158442e-04	k: 499	n:1310000
KS ci ratio: 3.853880e-02	ci left: 7.684839e-03	ci right 7.987572e-03	k: 10264	n:1310000
INPP5D   1310000 perm   913 sec   (1434 perm/sec)   p_kst 7.835115e-03   p_cons 3.809160e-04   p_joint 1.144275e-03

Joint ci ratio: 1.029588e-01	ci left: 1.040480e-03	ci right 1.154152e-03	k: 1447	n:1320000
Cons ci ratio: 1.745773e-01	ci left: 3.484883e-04	ci right 4.158567e-04	k: 503	n:1320000
KS ci ratio: 3.835212e-02	ci left: 7.701651e-03	ci right 8.003545e-03	k: 10364	n:1320000
INPP5D   1320000 perm   925 sec   (1427 perm/sec)   p_kst 7.851515e-03   p_cons 3.810606e-04   p_joint 1.096212e-03

Joint ci ratio: 1.024645e-01	ci left: 1.042913e-03	ci right 1.156270e-03	k: 1461	n:1330000
Cons ci ratio: 1.742320e-01	ci left: 3.473062e-04	ci right 4.142994e-04	k: 505	n:1330000
KS ci ratio: 3.819021e-02	ci left: 7.709277e-03	ci right 8.010165e-03	k: 10452	n:1330000
INPP5D   1330000 perm   937 sec   (1419 perm/sec)   p_kst 7.858647e-03   p_cons 3.796992e-04   p_joint 1.098496e-03

Joint ci ratio: 1.020465e-01	ci left: 1.043856e-03	ci right 1.156826e-03	k: 1473	n:1340000
Cons ci ratio: 1.737179e-01	ci left: 3.468557e-04	ci right 4.135438e-04	k: 508	n:1340000
KS ci ratio: 3.806492e-02	ci left: 7.702746e-03	ci right 8.002372e-03	k: 10521	n:1340000
INPP5D   1340000 perm   949 sec   (1412 perm/sec)   p_kst 7.851493e-03   p_cons 3.791045e-04   p_joint 1.099254e-03

Joint ci ratio: 1.015994e-01	ci left: 1.045508e-03	ci right 1.158131e-03	k: 1486	n:1350000
Cons ci ratio: 1.728708e-01	ci left: 3.478295e-04	ci right 4.143447e-04	k: 513	n:1350000
KS ci ratio: 3.791561e-02	ci left: 7.706587e-03	ci right 8.005160e-03	k: 10604	n:1350000
INPP5D   1350000 perm   961 sec   (1405 perm/sec)   p_kst 7.854815e-03   p_cons 3.800000e-04   p_joint 1.100741e-03

Joint ci ratio: 1.013273e-01	ci left: 1.043554e-03	ci right 1.155647e-03	k: 1494	n:1360000
Cons ci ratio: 1.720360e-01	ci left: 3.487897e-04	ci right 4.151330e-04	k: 518	n:1360000
KS ci ratio: 3.776270e-02	ci left: 7.712558e-03	ci right 8.010132e-03	k: 10690	n:1360000
INPP5D   1360000 perm   973 sec   (1397 perm/sec)   p_kst 7.860294e-03   p_cons 3.808824e-04   p_joint 1.098529e-03

Joint ci ratio: 1.009901e-01	ci left: 1.043051e-03	ci right 1.154696e-03	k: 1504	n:1370000
Cons ci ratio: 1.717056e-01	ci left: 3.476408e-04	ci right 4.136254e-04	k: 520	n:1370000
KS ci ratio: 3.762394e-02	ci left: 7.713383e-03	ci right 8.009871e-03	k: 10769	n:1370000
INPP5D   1370000 perm   985 sec   (1390 perm/sec)   p_kst 7.860584e-03   p_cons 3.795620e-04   p_joint 1.097810e-03

Joint ci ratio: 1.010241e-01	ci left: 1.034786e-03	ci right 1.145586e-03	k: 1503	n:1380000
Cons ci ratio: 1.707252e-01	ci left: 3.492832e-04	ci right 4.151621e-04	k: 526	n:1380000
KS ci ratio: 3.748844e-02	ci left: 7.713480e-03	ci right 8.008881e-03	k: 10847	n:1380000
INPP5D   1380000 perm   998 sec   (1383 perm/sec)   p_kst 7.860145e-03   p_cons 3.811594e-04   p_joint 1.089130e-03

Joint ci ratio: 1.089644e-01	ci left: 8.795196e-04	ci right 9.815710e-04	k: 1292	n:1390000
Cons ci ratio: 1.700810e-01	ci left: 3.495254e-04	ci right 4.151756e-04	k: 530	n:1390000
KS ci ratio: 3.734062e-02	ci left: 7.719279e-03	ci right 8.013712e-03	k: 10933	n:1390000
INPP5D   1390000 perm   1011 sec   (1375 perm/sec)   p_kst 7.865468e-03   p_cons 3.812950e-04   p_joint 9.294964e-04

Joint ci ratio: 1.085454e-01	ci left: 8.801859e-04	ci right 9.818969e-04	k: 1302	n:1400000
Cons ci ratio: 1.700812e-01	ci left: 3.470287e-04	ci right 4.122101e-04	k: 530	n:1400000
KS ci ratio: 3.718433e-02	ci left: 7.729244e-03	ci right 8.022797e-03	k: 11025	n:1400000
INPP5D   1400000 perm   1023 sec   (1368 perm/sec)   p_kst 7.875000e-03   p_cons 3.785714e-04   p_joint 9.300000e-04

Joint ci ratio: 1.082138e-01	ci left: 8.794634e-04	ci right 9.807606e-04	k: 1310	n:1410000
Cons ci ratio: 1.699214e-01	ci left: 3.452466e-04	ci right 4.100260e-04	k: 531	n:1410000
KS ci ratio: 3.706697e-02	ci left: 7.723611e-03	ci right 8.016005e-03	k: 11095	n:1410000
INPP5D   1410000 perm   1036 sec   (1361 perm/sec)   p_kst 7.868794e-03   p_cons 3.765957e-04   p_joint 9.290780e-04

Joint ci ratio: 1.078852e-01	ci left: 8.787515e-04	ci right 9.796399e-04	k: 1318	n:1420000
Cons ci ratio: 1.691284e-01	ci left: 3.461870e-04	ci right 4.108089e-04	k: 536	n:1420000
KS ci ratio: 3.693072e-02	ci left: 7.726432e-03	ci right 8.017834e-03	k: 11177	n:1420000
INPP5D   1420000 perm   1049 sec   (1354 perm/sec)   p_kst 7.871127e-03   p_cons 3.774648e-04   p_joint 9.281690e-04

Joint ci ratio: 1.074380e-01	ci left: 8.800916e-04	ci right 9.806886e-04	k: 1329	n:1430000
Cons ci ratio: 1.678823e-01	ci left: 3.491246e-04	ci right 4.137662e-04	k: 544	n:1430000
KS ci ratio: 3.679925e-02	ci left: 7.727829e-03	ci right 8.018225e-03	k: 11257	n:1430000
INPP5D   1430000 perm   1063 sec   (1346 perm/sec)   p_kst 7.872028e-03   p_cons 3.804196e-04   p_joint 9.293706e-04

Joint ci ratio: 1.070764e-01	ci left: 8.800622e-04	ci right 9.802958e-04	k: 1338	n:1440000
Cons ci ratio: 1.674222e-01	ci left: 3.486961e-04	ci right 4.130635e-04	k: 547	n:1440000
KS ci ratio: 3.667733e-02	ci left: 7.725769e-03	ci right 8.015105e-03	k: 11332	n:1440000
INPP5D   1440000 perm   1080 sec   (1333 perm/sec)   p_kst 7.869444e-03   p_cons 3.798611e-04   p_joint 9.291667e-04

Joint ci ratio: 1.133029e-01	ci left: 7.780856e-04	ci right 8.722025e-04	k: 1195	n:1450000
Cons ci ratio: 1.672698e-01	ci left: 3.469520e-04	ci right 4.109333e-04	k: 548	n:1450000
KS ci ratio: 3.655823e-02	ci left: 7.723055e-03	ci right 8.011330e-03	k: 11406	n:1450000
INPP5D   1450000 perm   1095 sec   (1324 perm/sec)   p_kst 7.866207e-03   p_cons 3.779310e-04   p_joint 8.241379e-04

Joint ci ratio: 1.132559e-01	ci left: 7.734217e-04	ci right 8.669329e-04	k: 1196	n:1460000
Cons ci ratio: 1.669660e-01	ci left: 3.458882e-04	ci right 4.095458e-04	k: 550	n:1460000
KS ci ratio: 3.644188e-02	ci left: 7.719700e-03	ci right 8.006915e-03	k: 11479	n:1460000
INPP5D   1460000 perm   1108 sec   (1318 perm/sec)   p_kst 7.862329e-03   p_cons 3.767123e-04   p_joint 8.191781e-04

Joint ci ratio: 1.127389e-01	ci left: 7.754318e-04	ci right 8.687298e-04	k: 1207	n:1470000
Cons ci ratio: 1.663633e-01	ci left: 3.461428e-04	ci right 4.095943e-04	k: 554	n:1470000
KS ci ratio: 3.631397e-02	ci left: 7.721786e-03	ci right 8.008049e-03	k: 11560	n:1470000
INPP5D   1470000 perm   1121 sec   (1311 perm/sec)   p_kst 7.863946e-03   p_cons 3.768707e-04   p_joint 8.210884e-04

Joint ci ratio: 1.124138e-01	ci left: 7.747890e-04	ci right 8.677229e-04	k: 1214	n:1480000
Cons ci ratio: 1.656188e-01	ci left: 3.470420e-04	ci right 4.103453e-04	k: 559	n:1480000
KS ci ratio: 3.618582e-02	ci left: 7.724516e-03	ci right 8.009848e-03	k: 11642	n:1480000
INPP5D   1480000 perm   1134 sec   (1305 perm/sec)   p_kst 7.866216e-03   p_cons 3.777027e-04   p_joint 8.202703e-04

Joint ci ratio: 1.119997e-01	ci left: 7.754598e-04	ci right 8.681089e-04	k: 1223	n:1490000
Cons ci ratio: 1.651770e-01	ci left: 3.466430e-04	ci right 4.096880e-04	k: 562	n:1490000
KS ci ratio: 3.609472e-02	ci left: 7.711912e-03	ci right 7.996046e-03	k: 11701	n:1490000
INPP5D   1490000 perm   1148 sec   (1298 perm/sec)   p_kst 7.853020e-03   p_cons 3.771812e-04   p_joint 8.208054e-04

Joint ci ratio: 1.116355e-01	ci left: 7.754743e-04	ci right 8.678040e-04	k: 1231	n:1500000
Cons ci ratio: 1.644483e-01	ci left: 3.475279e-04	ci right 4.104274e-04	k: 567	n:1500000
KS ci ratio: 3.599352e-02	ci left: 7.704102e-03	ci right 7.987136e-03	k: 11767	n:1500000
INPP5D   1500000 perm   1161 sec   (1292 perm/sec)   p_kst 7.844667e-03   p_cons 3.780000e-04   p_joint 8.206667e-04

Joint ci ratio: 1.112299e-01	ci left: 7.761328e-04	ci right 8.681832e-04	k: 1240	n:1510000
Cons ci ratio: 1.640158e-01	ci left: 3.471315e-04	ci right 4.097777e-04	k: 570	n:1510000
KS ci ratio: 3.586872e-02	ci left: 7.706899e-03	ci right 7.989034e-03	k: 11849	n:1510000
INPP5D   1510000 perm   1175 sec   (1285 perm/sec)   p_kst 7.847020e-03   p_cons 3.774834e-04   p_joint 8.211921e-04

Joint ci ratio: 1.107844e-01	ci left: 7.774230e-04	ci right 8.692330e-04	k: 1250	n:1520000
Cons ci ratio: 1.631607e-01	ci left: 3.486335e-04	ci right 4.111906e-04	k: 576	n:1520000
KS ci ratio: 3.576637e-02	ci left: 7.700531e-03	ci right 7.981612e-03	k: 11917	n:1520000
INPP5D   1520000 perm   1189 sec   (1279 perm/sec)   p_kst 7.840132e-03   p_cons 3.789474e-04   p_joint 8.223684e-04

Joint ci ratio: 1.108734e-01	ci left: 7.710707e-04	ci right 8.622085e-04	k: 1248	n:1530000
Cons ci ratio: 1.628788e-01	ci left: 3.476087e-04	ci right 4.098636e-04	k: 578	n:1530000
KS ci ratio: 3.566040e-02	ci left: 7.696191e-03	ci right 7.976265e-03	k: 11988	n:1530000
INPP5D   1530000 perm   1202 sec   (1272 perm/sec)   p_kst 7.835294e-03   p_cons 3.777778e-04   p_joint 8.156863e-04

Joint ci ratio: 1.103883e-01	ci left: 7.730090e-04	ci right 8.639501e-04	k: 1259	n:1540000
Cons ci ratio: 1.624585e-01	ci left: 3.472202e-04	ci right 4.092294e-04	k: 581	n:1540000
KS ci ratio: 3.555982e-02	ci left: 7.689978e-03	ci right 7.969020e-03	k: 12056	n:1540000
INPP5D   1540000 perm   1216 sec   (1266 perm/sec)   p_kst 7.828571e-03   p_cons 3.772727e-04   p_joint 8.175325e-04

Joint ci ratio: 1.103886e-01	ci left: 7.680217e-04	ci right 8.583764e-04	k: 1259	n:1550000
Cons ci ratio: 1.613531e-01	ci left: 3.499323e-04	ci right 4.119594e-04	k: 589	n:1550000
KS ci ratio: 3.546303e-02	ci left: 7.682568e-03	ci right 7.960566e-03	k: 12122	n:1550000
INPP5D   1550000 perm   1230 sec   (1260 perm/sec)   p_kst 7.820645e-03   p_cons 3.800000e-04   p_joint 8.122581e-04

Joint ci ratio: 1.099097e-01	ci left: 7.699556e-04	ci right 8.601194e-04	k: 1270	n:1560000
Cons ci ratio: 1.610804e-01	ci left: 3.489195e-04	ci right 4.106524e-04	k: 591	n:1560000
KS ci ratio: 3.536118e-02	ci left: 7.677795e-03	ci right 7.954807e-03	k: 12192	n:1560000
INPP5D   1560000 perm   1244 sec   (1254 perm/sec)   p_kst 7.815385e-03   p_cons 3.788462e-04   p_joint 8.141026e-04

Joint ci ratio: 1.096084e-01	ci left: 7.693876e-04	ci right 8.592219e-04	k: 1277	n:1570000
Cons ci ratio: 1.606738e-01	ci left: 3.485310e-04	ci right 4.100245e-04	k: 594	n:1570000
KS ci ratio: 3.526890e-02	ci left: 7.669295e-03	ci right 7.945264e-03	k: 12256	n:1570000
INPP5D   1570000 perm   1258 sec   (1248 perm/sec)   p_kst 7.806369e-03   p_cons 3.783439e-04   p_joint 8.133758e-04

Joint ci ratio: 1.093094e-01	ci left: 7.688271e-04	ci right 8.583354e-04	k: 1284	n:1580000
Cons ci ratio: 1.602703e-01	ci left: 3.481475e-04	ci right 4.094043e-04	k: 597	n:1580000
KS ci ratio: 3.513856e-02	ci left: 7.677844e-03	ci right 7.953079e-03	k: 12347	n:1580000
INPP5D   1580000 perm   1272 sec   (1242 perm/sec)   p_kst 7.814557e-03   p_cons 3.778481e-04   p_joint 8.126582e-04

Joint ci ratio: 1.089708e-01	ci left: 7.688858e-04	ci right 8.581058e-04	k: 1292	n:1590000
Cons ci ratio: 1.596044e-01	ci left: 3.489767e-04	ci right 4.100999e-04	k: 602	n:1590000
KS ci ratio: 3.503236e-02	ci left: 7.676312e-03	ci right 7.950643e-03	k: 12422	n:1590000
INPP5D   1590000 perm   1286 sec   (1236 perm/sec)   p_kst 7.812579e-03   p_cons 3.786164e-04   p_joint 8.125786e-04

Joint ci ratio: 1.092675e-01	ci left: 7.598245e-04	ci right 8.482485e-04	k: 1285	n:1600000
Cons ci ratio: 1.592089e-01	ci left: 3.485958e-04	ci right 4.094865e-04	k: 605	n:1600000
KS ci ratio: 3.492572e-02	ci left: 7.675419e-03	ci right 7.948867e-03	k: 12498	n:1600000
INPP5D   1600000 perm   1300 sec   (1231 perm/sec)   p_kst 7.811250e-03   p_cons 3.781250e-04   p_joint 8.031250e-04

Joint ci ratio: 1.090135e-01	ci left: 7.587301e-04	ci right 8.468083e-04	k: 1291	n:1610000
Cons ci ratio: 1.586860e-01	ci left: 3.488163e-04	ci right 4.095263e-04	k: 609	n:1610000
KS ci ratio: 3.482422e-02	ci left: 7.672692e-03	ci right 7.945232e-03	k: 12571	n:1610000
INPP5D   1610000 perm   1315 sec   (1225 perm/sec)   p_kst 7.808075e-03   p_cons 3.782609e-04   p_joint 8.018634e-04

Joint ci ratio: 1.087613e-01	ci left: 7.576494e-04	ci right 8.453857e-04	k: 1297	n:1620000
Cons ci ratio: 1.584266e-01	ci left: 3.478487e-04	ci right 4.082819e-04	k: 611	n:1620000
KS ci ratio: 3.471117e-02	ci left: 7.675507e-03	ci right 7.947245e-03	k: 12653	n:1620000
INPP5D   1620000 perm   1329 sec   (1219 perm/sec)   p_kst 7.810494e-03   p_cons 3.771605e-04   p_joint 8.006173e-04

Joint ci ratio: 1.085109e-01	ci left: 7.565821e-04	ci right 8.439802e-04	k: 1303	n:1630000
Cons ci ratio: 1.580398e-01	ci left: 3.474823e-04	ci right 4.076904e-04	k: 614	n:1630000
KS ci ratio: 3.461016e-02	ci left: 7.673423e-03	ci right 7.944281e-03	k: 12727	n:1630000
INPP5D   1630000 perm   1343 sec   (1213 perm/sec)   p_kst 7.807975e-03   p_cons 3.766871e-04   p_joint 7.993865e-04

Joint ci ratio: 1.082208e-01	ci left: 7.561214e-04	ci right 8.432180e-04	k: 1310	n:1640000
Cons ci ratio: 1.568957e-01	ci left: 3.506351e-04	ci right 4.109083e-04	k: 623	n:1640000
KS ci ratio: 3.450324e-02	ci left: 7.674389e-03	ci right 7.944427e-03	k: 12806	n:1640000
INPP5D   1640000 perm   1358 sec   (1208 perm/sec)   p_kst 7.808537e-03   p_cons 3.798780e-04   p_joint 7.987805e-04

Joint ci ratio: 1.094820e-01	ci left: 7.338516e-04	ci right 8.194315e-04	k: 1280	n:1650000
Cons ci ratio: 1.562708e-01	ci left: 3.514216e-04	ci right 4.115669e-04	k: 628	n:1650000
KS ci ratio: 3.439058e-02	ci left: 7.678348e-03	ci right 7.947626e-03	k: 12890	n:1650000
INPP5D   1650000 perm   1372 sec   (1202 perm/sec)   p_kst 7.812121e-03   p_cons 3.806061e-04   p_joint 7.757576e-04

Joint ci ratio: 1.090148e-01	ci left: 7.358763e-04	ci right 8.213026e-04	k: 1291	n:1660000
Cons ci ratio: 1.556533e-01	ci left: 3.521991e-04	ci right 4.122170e-04	k: 633	n:1660000
KS ci ratio: 3.427768e-02	ci left: 7.682859e-03	ci right 7.951393e-03	k: 12975	n:1660000
INPP5D   1660000 perm   1387 sec   (1197 perm/sec)   p_kst 7.816265e-03   p_cons 3.813253e-04   p_joint 7.777108e-04

Joint ci ratio: 1.088886e-01	ci left: 7.332172e-04	ci right 8.182300e-04	k: 1294	n:1670000
Cons ci ratio: 1.555308e-01	ci left: 3.506656e-04	ci right 4.103708e-04	k: 634	n:1670000
KS ci ratio: 3.418832e-02	ci left: 7.677223e-03	ci right 7.944847e-03	k: 13043	n:1670000
INPP5D   1670000 perm   1402 sec   (1191 perm/sec)   p_kst 7.810180e-03   p_cons 3.796407e-04   p_joint 7.748503e-04

Joint ci ratio: 1.085539e-01	ci left: 7.334853e-04	ci right 8.182509e-04	k: 1302	n:1680000
Cons ci ratio: 1.554086e-01	ci left: 3.491504e-04	ci right 4.085465e-04	k: 635	n:1680000
KS ci ratio: 3.409966e-02	ci left: 7.671656e-03	ci right 7.938379e-03	k: 13111	n:1680000
INPP5D   1680000 perm   1417 sec   (1186 perm/sec)   p_kst 7.804167e-03   p_cons 3.779762e-04   p_joint 7.750000e-04

Joint ci ratio: 1.085958e-01	ci left: 7.285694e-04	ci right 8.128016e-04	k: 1301	n:1690000
Cons ci ratio: 1.545603e-01	ci left: 3.510658e-04	ci right 4.104316e-04	k: 642	n:1690000
KS ci ratio: 3.399739e-02	ci left: 7.672609e-03	ci right 7.938549e-03	k: 13190	n:1690000
INPP5D   1690000 perm   1432 sec   (1180 perm/sec)   p_kst 7.804734e-03   p_cons 3.798817e-04   p_joint 7.698225e-04

Joint ci ratio: 1.106565e-01	ci left: 6.968219e-04	ci right 7.790120e-04	k: 1253	n:1700000
Cons ci ratio: 1.539627e-01	ci left: 3.518284e-04	ci right 4.110719e-04	k: 647	n:1700000
KS ci ratio: 3.388959e-02	ci left: 7.676469e-03	ci right 7.941683e-03	k: 13274	n:1700000
INPP5D   1700000 perm   1447 sec   (1175 perm/sec)   p_kst 7.808235e-03   p_cons 3.805882e-04   p_joint 7.370588e-04

Joint ci ratio: 1.156059e-01	ci left: 6.330788e-04	ci right 7.113184e-04	k: 1148	n:1710000
Cons ci ratio: 1.537258e-01	ci left: 3.508954e-04	ci right 4.098825e-04	k: 649	n:1710000
KS ci ratio: 3.376881e-02	ci left: 7.686663e-03	ci right 7.951265e-03	k: 13369	n:1710000
INPP5D   1710000 perm   1462 sec   (1170 perm/sec)   p_kst 7.818129e-03   p_cons 3.795322e-04   p_joint 6.713450e-04

Joint ci ratio: 1.153053e-01	ci left: 6.327858e-04	ci right 7.107719e-04	k: 1154	n:1720000
Cons ci ratio: 1.530211e-01	ci left: 3.522099e-04	ci right 4.111216e-04	k: 655	n:1720000
KS ci ratio: 3.369474e-02	ci left: 7.675986e-03	ci right 7.939629e-03	k: 13428	n:1720000
INPP5D   1720000 perm   1477 sec   (1165 perm/sec)   p_kst 7.806977e-03   p_cons 3.808140e-04   p_joint 6.709302e-04

Joint ci ratio: 1.150069e-01	ci left: 6.324963e-04	ci right 7.102314e-04	k: 1160	n:1730000
Cons ci ratio: 1.524412e-01	ci left: 3.529537e-04	ci right 4.117457e-04	k: 660	n:1730000
KS ci ratio: 3.360232e-02	ci left: 7.674030e-03	ci right 7.936870e-03	k: 13502	n:1730000
INPP5D   1730000 perm   1493 sec   (1159 perm/sec)   p_kst 7.804624e-03   p_cons 3.815029e-04   p_joint 6.705202e-04

Joint ci ratio: 1.148094e-01	ci left: 6.310941e-04	ci right 7.085146e-04	k: 1164	n:1740000
Cons ci ratio: 1.518678e-01	ci left: 3.536894e-04	ci right 4.123622e-04	k: 665	n:1740000
KS ci ratio: 3.350072e-02	ci left: 7.676658e-03	ci right 7.938777e-03	k: 13584	n:1740000
INPP5D   1740000 perm   1508 sec   (1154 perm/sec)   p_kst 7.806897e-03   p_cons 3.821839e-04   p_joint 6.689655e-04

Joint ci ratio: 1.144660e-01	ci left: 6.313731e-04	ci right 7.085806e-04	k: 1171	n:1750000
Cons ci ratio: 1.515269e-01	ci left: 3.533175e-04	ci right 4.117852e-04	k: 668	n:1750000
KS ci ratio: 3.341235e-02	ci left: 7.673590e-03	ci right 7.934900e-03	k: 13656	n:1750000
INPP5D   1750000 perm   1523 sec   (1149 perm/sec)   p_kst 7.803429e-03   p_cons 3.817143e-04   p_joint 6.691429e-04

Joint ci ratio: 1.025485e-01	ci left: 7.869976e-04	ci right 8.726132e-04	k: 1459	n:1760000
Cons ci ratio: 1.511884e-01	ci left: 3.529500e-04	ci right 4.112146e-04	k: 671	n:1760000
KS ci ratio: 3.331734e-02	ci left: 7.673939e-03	ci right 7.934503e-03	k: 13734	n:1760000
INPP5D   1760000 perm   1539 sec   (1144 perm/sec)   p_kst 7.803409e-03   p_cons 3.812500e-04   p_joint 8.289773e-04

Joint ci ratio: 1.072461e-01	ci left: 7.137802e-04	ci right 7.952122e-04	k: 1334	n:1770000
Cons ci ratio: 1.508521e-01	ci left: 3.525868e-04	ci right 4.106502e-04	k: 674	n:1770000
KS ci ratio: 3.323042e-02	ci left: 7.670922e-03	ci right 7.930692e-03	k: 13806	n:1770000
INPP5D   1770000 perm   1554 sec   (1139 perm/sec)   p_kst 7.800000e-03   p_cons 3.807910e-04   p_joint 7.536723e-04

Joint ci ratio: 1.069660e-01	ci left: 7.135975e-04	ci right 7.947826e-04	k: 1341	n:1780000
Cons ci ratio: 1.501859e-01	ci left: 3.538499e-04	ci right 4.118408e-04	k: 680	n:1780000
KS ci ratio: 3.310692e-02	ci left: 7.685213e-03	ci right 7.944482e-03	k: 13909	n:1780000
INPP5D   1780000 perm   1570 sec   (1134 perm/sec)   p_kst 7.814045e-03   p_cons 3.820225e-04   p_joint 7.533708e-04

Joint ci ratio: 1.065696e-01	ci left: 7.150483e-04	ci right 7.960782e-04	k: 1351	n:1790000
Cons ci ratio: 1.495286e-01	ci left: 3.550993e-04	ci right 4.130176e-04	k: 686	n:1790000
KS ci ratio: 3.301211e-02	ci left: 7.686603e-03	ci right 7.945161e-03	k: 13989	n:1790000
INPP5D   1790000 perm   1585 sec   (1129 perm/sec)   p_kst 7.815084e-03   p_cons 3.832402e-04   p_joint 7.547486e-04

Joint ci ratio: 1.065305e-01	ci left: 7.116165e-04	ci right 7.922260e-04	k: 1352	n:1800000
Cons ci ratio: 1.490952e-01	ci left: 3.552658e-04	ci right 4.130282e-04	k: 690	n:1800000
KS ci ratio: 3.291575e-02	ci left: 7.689080e-03	ci right 7.946952e-03	k: 14071	n:1800000
INPP5D   1800000 perm   1601 sec   (1124 perm/sec)   p_kst 7.817222e-03   p_cons 3.833333e-04   p_joint 7.511111e-04

Joint ci ratio: 1.062560e-01	ci left: 7.114494e-04	ci right 7.918193e-04	k: 1359	n:1810000
Cons ci ratio: 1.483455e-01	ci left: 3.570265e-04	ci right 4.147575e-04	k: 697	n:1810000
KS ci ratio: 3.282607e-02	ci left: 7.688790e-03	ci right 7.945937e-03	k: 14148	n:1810000
INPP5D   1810000 perm   1619 sec   (1118 perm/sec)   p_kst 7.816575e-03   p_cons 3.850829e-04   p_joint 7.508287e-04

Joint ci ratio: 1.057516e-01	ci left: 7.144939e-04	ci right 7.948007e-04	k: 1372	n:1820000
Cons ci ratio: 1.481335e-01	ci left: 3.561229e-04	ci right 4.136182e-04	k: 699	n:1820000
KS ci ratio: 3.271627e-02	ci left: 7.698315e-03	ci right 7.954903e-03	k: 14243	n:1820000
INPP5D   1820000 perm   1634 sec   (1114 perm/sec)   p_kst 7.825824e-03   p_cons 3.840659e-04   p_joint 7.538462e-04

Joint ci ratio: 1.053685e-01	ci left: 7.159098e-04	ci right 7.960662e-04	k: 1382	n:1830000
Cons ci ratio: 1.475026e-01	ci left: 3.573343e-04	ci right 4.147579e-04	k: 705	n:1830000
KS ci ratio: 3.262132e-02	ci left: 7.701233e-03	ci right 7.957159e-03	k: 14326	n:1830000
INPP5D   1830000 perm   1651 sec   (1108 perm/sec)   p_kst 7.828415e-03   p_cons 3.852459e-04   p_joint 7.551913e-04

Joint ci ratio: 1.052925e-01	ci left: 7.130773e-04	ci right 7.928554e-04	k: 1384	n:1840000
Cons ci ratio: 1.470866e-01	ci left: 3.574861e-04	ci right 4.147577e-04	k: 709	n:1840000
KS ci ratio: 3.253744e-02	ci left: 7.699268e-03	ci right 7.954459e-03	k: 14400	n:1840000
INPP5D   1840000 perm   1666 sec   (1104 perm/sec)   p_kst 7.826087e-03   p_cons 3.853261e-04   p_joint 7.521739e-04

Joint ci ratio: 1.051788e-01	ci left: 7.108017e-04	ci right 7.902341e-04	k: 1387	n:1850000
Cons ci ratio: 1.469832e-01	ci left: 3.560744e-04	ci right 4.130762e-04	k: 710	n:1850000
KS ci ratio: 3.245759e-02	ci left: 7.695716e-03	ci right 7.950152e-03	k: 14471	n:1850000
INPP5D   1850000 perm   1683 sec   (1099 perm/sec)   p_kst 7.822162e-03   p_cons 3.837838e-04   p_joint 7.497297e-04

Joint ci ratio: 1.082260e-01	ci left: 6.666861e-04	ci right 7.434845e-04	k: 1310	n:1860000
Cons ci ratio: 1.464690e-01	ci left: 3.567495e-04	ci right 4.136422e-04	k: 715	n:1860000
KS ci ratio: 3.235479e-02	ci left: 7.703404e-03	ci right 7.957272e-03	k: 14563	n:1860000
INPP5D   1860000 perm   1699 sec   (1095 perm/sec)   p_kst 7.829570e-03   p_cons 3.844086e-04   p_joint 7.043011e-04

Joint ci ratio: 1.076932e-01	ci left: 6.698851e-04	ci right 7.466481e-04	k: 1323	n:1870000
Cons ci ratio: 1.462650e-01	ci left: 3.558721e-04	ci right 4.125389e-04	k: 717	n:1870000
KS ci ratio: 3.227406e-02	ci left: 7.700931e-03	ci right 7.954073e-03	k: 14636	n:1870000
INPP5D   1870000 perm   1715 sec   (1090 perm/sec)   p_kst 7.826738e-03   p_cons 3.834225e-04   p_joint 7.074866e-04

Joint ci ratio: 1.071682e-01	ci left: 6.730510e-04	ci right 7.497771e-04	k: 1336	n:1880000
Cons ci ratio: 1.459604e-01	ci left: 3.555166e-04	ci right 4.119986e-04	k: 720	n:1880000
KS ci ratio: 3.218620e-02	ci left: 7.702179e-03	ci right 7.954660e-03	k: 14716	n:1880000
INPP5D   1880000 perm   1732 sec   (1086 perm/sec)   p_kst 7.827660e-03   p_cons 3.829787e-04   p_joint 7.106383e-04

Joint ci ratio: 1.068092e-01	ci left: 6.741244e-04	ci right 7.506993e-04	k: 1345	n:1890000
Cons ci ratio: 1.453567e-01	ci left: 3.566944e-04	ci right 4.131089e-04	k: 726	n:1890000
KS ci ratio: 3.210016e-02	ci left: 7.702890e-03	ci right 7.954707e-03	k: 14795	n:1890000
INPP5D   1890000 perm   1748 sec   (1081 perm/sec)   p_kst 7.828042e-03   p_cons 3.841270e-04   p_joint 7.116402e-04

Joint ci ratio: 1.063753e-01	ci left: 6.762116e-04	ci right 7.526919e-04	k: 1356	n:1900000
Cons ci ratio: 1.451573e-01	ci left: 3.558315e-04	ci right 4.120255e-04	k: 728	n:1900000
KS ci ratio: 3.200396e-02	ci left: 7.708815e-03	ci right 7.960057e-03	k: 14884	n:1900000
INPP5D   1900000 perm   1765 sec   (1076 perm/sec)   p_kst 7.833684e-03   p_cons 3.831579e-04   p_joint 7.136842e-04

Joint ci ratio: 1.060631e-01	ci left: 6.767484e-04	ci right 7.530508e-04	k: 1364	n:1910000
Cons ci ratio: 1.447607e-01	ci left: 3.559868e-04	ci right 4.120384e-04	k: 732	n:1910000
KS ci ratio: 3.191721e-02	ci left: 7.710525e-03	ci right 7.961128e-03	k: 14965	n:1910000
INPP5D   1910000 perm   1782 sec   (1072 perm/sec)   p_kst 7.835079e-03   p_cons 3.832461e-04   p_joint 7.141361e-04

Joint ci ratio: 1.059856e-01	ci left: 6.742377e-04	ci right 7.501980e-04	k: 1366	n:1920000
Cons ci ratio: 1.446621e-01	ci left: 3.546346e-04	ci right 4.104321e-04	k: 733	n:1920000
KS ci ratio: 3.183116e-02	ci left: 7.712217e-03	ci right 7.962188e-03	k: 15046	n:1920000
INPP5D   1920000 perm   1798 sec   (1068 perm/sec)   p_kst 7.836458e-03   p_cons 3.817708e-04   p_joint 7.114583e-04

Joint ci ratio: 1.058696e-01	ci left: 6.722574e-04	ci right 7.479066e-04	k: 1369	n:1930000
Cons ci ratio: 1.443674e-01	ci left: 3.542953e-04	ci right 4.099161e-04	k: 736	n:1930000
KS ci ratio: 3.175004e-02	ci left: 7.711837e-03	ci right 7.961146e-03	k: 15123	n:1930000
INPP5D   1930000 perm   1815 sec   (1063 perm/sec)   p_kst 7.835751e-03   p_cons 3.813472e-04   p_joint 7.093264e-04

Joint ci ratio: 1.056770e-01	ci left: 6.713013e-04	ci right 7.466969e-04	k: 1374	n:1940000
Cons ci ratio: 1.439773e-01	ci left: 3.544565e-04	ci right 4.099393e-04	k: 740	n:1940000
KS ci ratio: 3.167059e-02	ci left: 7.710949e-03	ci right 7.959595e-03	k: 15199	n:1940000
INPP5D   1940000 perm   1832 sec   (1059 perm/sec)   p_kst 7.834536e-03   p_cons 3.814433e-04   p_joint 7.082474e-04

Joint ci ratio: 1.053328e-01	ci left: 6.723523e-04	ci right 7.476048e-04	k: 1383	n:1950000
Cons ci ratio: 1.434939e-01	ci left: 3.551107e-04	ci right 4.104933e-04	k: 745	n:1950000
KS ci ratio: 3.158547e-02	ci left: 7.713125e-03	ci right 7.961161e-03	k: 15281	n:1950000
INPP5D   1950000 perm   1849 sec   (1054 perm/sec)   p_kst 7.836410e-03   p_cons 3.820513e-04   p_joint 7.092308e-04

Joint ci ratio: 1.057930e-01	ci left: 6.629610e-04	ci right 7.375067e-04	k: 1371	n:1960000
Cons ci ratio: 1.431107e-01	ci left: 3.552666e-04	ci right 4.105129e-04	k: 749	n:1960000
KS ci ratio: 3.150931e-02	ci left: 7.711229e-03	ci right 7.958595e-03	k: 15355	n:1960000
INPP5D   1960000 perm   1866 sec   (1050 perm/sec)   p_kst 7.834184e-03   p_cons 3.821429e-04   p_joint 6.994898e-04

Joint ci ratio: 1.078174e-01	ci left: 6.343984e-04	ci right 7.071840e-04	k: 1320	n:1970000
Cons ci ratio: 1.428254e-01	ci left: 3.549316e-04	ci right 4.100063e-04	k: 752	n:1970000
KS ci ratio: 3.141729e-02	ci left: 7.717412e-03	ci right 7.964241e-03	k: 15445	n:1970000
INPP5D   1970000 perm   1883 sec   (1046 perm/sec)   p_kst 7.840102e-03   p_cons 3.817259e-04   p_joint 6.700508e-04

Joint ci ratio: 1.076140e-01	ci left: 6.336515e-04	ci right 7.062056e-04	k: 1325	n:1980000
Cons ci ratio: 1.424475e-01	ci left: 3.550871e-04	ci right 4.100278e-04	k: 756	n:1980000
KS ci ratio: 3.132505e-02	ci left: 7.724035e-03	ci right 7.970337e-03	k: 15536	n:1980000
INPP5D   1980000 perm   1900 sec   (1042 perm/sec)   p_kst 7.846465e-03   p_cons 3.818182e-04   p_joint 6.691919e-04

Joint ci ratio: 1.084771e-01	ci left: 6.201995e-04	ci right 6.918193e-04	k: 1304	n:1990000
Cons ci ratio: 1.419794e-01	ci left: 3.557259e-04	ci right 4.105693e-04	k: 761	n:1990000
KS ci ratio: 3.124268e-02	ci left: 7.726105e-03	ci right 7.971813e-03	k: 15618	n:1990000
INPP5D   1990000 perm   1918 sec   (1038 perm/sec)   p_kst 7.848241e-03   p_cons 3.824121e-04   p_joint 6.552764e-04

Joint ci ratio: 1.092763e-01	ci left: 6.078570e-04	ci right 6.786019e-04	k: 1285	n:2000000
Cons ci ratio: 1.415158e-01	ci left: 3.563586e-04	ci right 4.111050e-04	k: 766	n:2000000
KS ci ratio: 3.116997e-02	ci left: 7.723689e-03	ci right 7.968739e-03	k: 15691	n:2000000
INPP5D   2000000 perm   1935 sec   (1033 perm/sec)   p_kst 7.845500e-03   p_cons 3.830000e-04   p_joint 6.425000e-04

Joint ci ratio: 1.089800e-01	ci left: 6.082204e-04	ci right 6.788033e-04	k: 1292	n:2010000
Cons ci ratio: 1.413317e-01	ci left: 3.555455e-04	ci right 4.100899e-04	k: 768	n:2010000
KS ci ratio: 3.109180e-02	ci left: 7.724261e-03	ci right 7.968703e-03	k: 15770	n:2010000
INPP5D   2010000 perm   1953 sec   (1029 perm/sec)   p_kst 7.845771e-03   p_cons 3.820896e-04   p_joint 6.427861e-04

Joint ci ratio: 1.092341e-01	ci left: 6.023201e-04	ci right 6.723917e-04	k: 1286	n:2020000
Cons ci ratio: 1.408745e-01	ci left: 3.561733e-04	ci right 4.106224e-04	k: 773	n:2020000
KS ci ratio: 3.102901e-02	ci left: 7.717458e-03	ci right 7.961184e-03	k: 15834	n:2020000
INPP5D   2020000 perm   1970 sec   (1025 perm/sec)   p_kst 7.838614e-03   p_cons 3.826733e-04   p_joint 6.366337e-04

Joint ci ratio: 1.087701e-01	ci left: 6.046240e-04	ci right 6.746458e-04	k: 1297	n:2030000
Cons ci ratio: 1.405118e-01	ci left: 3.563198e-04	ci right 4.106393e-04	k: 777	n:2030000
KS ci ratio: 3.094896e-02	ci left: 7.719523e-03	ci right 7.962673e-03	k: 15916	n:2030000
INPP5D   2030000 perm   1988 sec   (1021 perm/sec)   p_kst 7.840394e-03   p_cons 3.827586e-04   p_joint 6.389163e-04

Joint ci ratio: 1.083949e-01	ci left: 6.059521e-04	ci right 6.758702e-04	k: 1306	n:2040000
Cons ci ratio: 1.400624e-01	ci left: 3.569381e-04	ci right 4.111633e-04	k: 782	n:2040000
KS ci ratio: 3.087438e-02	ci left: 7.719135e-03	ci right 7.961677e-03	k: 15993	n:2040000
INPP5D   2040000 perm   2006 sec   (1017 perm/sec)   p_kst 7.839706e-03   p_cons 3.833333e-04   p_joint 6.401961e-04

Joint ci ratio: 1.080236e-01	ci left: 6.072677e-04	ci right 6.770823e-04	k: 1315	n:2050000
Cons ci ratio: 1.397061e-01	ci left: 3.570799e-04	ci right 4.111771e-04	k: 786	n:2050000
KS ci ratio: 3.080227e-02	ci left: 7.717784e-03	ci right 7.959707e-03	k: 16068	n:2050000
INPP5D   2050000 perm   2023 sec   (1013 perm/sec)   p_kst 7.838049e-03   p_cons 3.834146e-04   p_joint 6.414634e-04

Joint ci ratio: 1.077374e-01	ci left: 6.076262e-04	ci right 6.772852e-04	k: 1322	n:2060000
Cons ci ratio: 1.396175e-01	ci left: 3.558149e-04	ci right 4.096835e-04	k: 787	n:2060000
KS ci ratio: 3.073258e-02	ci left: 7.715483e-03	ci right 7.956777e-03	k: 16141	n:2060000
INPP5D   2060000 perm   2041 sec   (1009 perm/sec)   p_kst 7.835437e-03   p_cons 3.820388e-04   p_joint 6.417476e-04

Joint ci ratio: 1.076562e-01	ci left: 6.056309e-04	ci right 6.750055e-04	k: 1324	n:2070000
Cons ci ratio: 1.393525e-01	ci left: 3.554947e-04	ci right 4.092042e-04	k: 790	n:2070000
KS ci ratio: 3.067194e-02	ci left: 7.708891e-03	ci right 7.949494e-03	k: 16205	n:2070000
INPP5D   2070000 perm   2058 sec   (1006 perm/sec)   p_kst 7.828502e-03   p_cons 3.816425e-04   p_joint 6.396135e-04

Joint ci ratio: 1.073729e-01	ci left: 6.059941e-04	ci right 6.752161e-04	k: 1331	n:2080000
Cons ci ratio: 1.388269e-01	ci left: 3.565698e-04	ci right 4.102218e-04	k: 796	n:2080000
KS ci ratio: 3.060219e-02	ci left: 7.707133e-03	ci right 7.947125e-03	k: 16279	n:2080000
INPP5D   2080000 perm   2076 sec   (1002 perm/sec)   p_kst 7.826442e-03   p_cons 3.826923e-04   p_joint 6.399038e-04

Joint ci ratio: 1.073328e-01	ci left: 6.035602e-04	ci right 6.724768e-04	k: 1332	n:2090000
Cons ci ratio: 1.385664e-01	ci left: 3.562494e-04	ci right 4.097442e-04	k: 799	n:2090000
KS ci ratio: 3.054138e-02	ci left: 7.701119e-03	ci right 7.940439e-03	k: 16344	n:2090000
INPP5D   2090000 perm   2095 sec   (998 perm/sec)   p_kst 7.820096e-03   p_cons 3.822967e-04   p_joint 6.373206e-04

Joint ci ratio: 1.071722e-01	ci left: 6.025398e-04	ci right 6.712304e-04	k: 1336	n:2100000
Cons ci ratio: 1.382212e-01	ci left: 3.563918e-04	ci right 4.097637e-04	k: 803	n:2100000
KS ci ratio: 3.047718e-02	ci left: 7.697053e-03	ci right 7.935736e-03	k: 16413	n:2100000
INPP5D   2100000 perm   2113 sec   (994 perm/sec)   p_kst 7.815714e-03   p_cons 3.823810e-04   p_joint 6.361905e-04

Joint ci ratio: 1.070522e-01	ci left: 6.010678e-04	ci right 6.695091e-04	k: 1339	n:2110000
Cons ci ratio: 1.381355e-01	ci left: 3.551602e-04	ci right 4.083120e-04	k: 804	n:2110000
KS ci ratio: 3.040410e-02	ci left: 7.697730e-03	ci right 7.935851e-03	k: 16492	n:2110000
INPP5D   2110000 perm   2131 sec   (990 perm/sec)   p_kst 7.816114e-03   p_cons 3.810427e-04   p_joint 6.345972e-04

Joint ci ratio: 1.068928e-01	ci left: 6.000689e-04	ci right 6.682883e-04	k: 1343	n:2120000
Cons ci ratio: 1.377935e-01	ci left: 3.553066e-04	ci right 4.083379e-04	k: 808	n:2120000
KS ci ratio: 3.032969e-02	ci left: 7.699338e-03	ci right 7.936915e-03	k: 16573	n:2120000
INPP5D   2120000 perm   2149 sec   (987 perm/sec)   p_kst 7.817453e-03   p_cons 3.811321e-04   p_joint 6.334906e-04

Joint ci ratio: 1.064580e-01	ci left: 6.022782e-04	ci right 6.704528e-04	k: 1354	n:2130000
Cons ci ratio: 1.372853e-01	ci left: 3.563585e-04	ci right 4.093346e-04	k: 814	n:2130000
KS ci ratio: 3.026865e-02	ci left: 7.694407e-03	ci right 7.931347e-03	k: 16640	n:2130000
INPP5D   2130000 perm   2167 sec   (983 perm/sec)   p_kst 7.812207e-03   p_cons 3.821596e-04   p_joint 6.356808e-04

Joint ci ratio: 1.063796e-01	ci left: 6.003735e-04	ci right 6.682793e-04	k: 1356	n:2140000
Cons ci ratio: 1.370334e-01	ci left: 3.560470e-04	ci right 4.088717e-04	k: 817	n:2140000
KS ci ratio: 3.021801e-02	ci left: 7.684422e-03	ci right 7.920651e-03	k: 16696	n:2140000
INPP5D   2140000 perm   2185 sec   (979 perm/sec)   p_kst 7.801869e-03   p_cons 3.817757e-04   p_joint 6.336449e-04

Joint ci ratio: 1.062232e-01	ci left: 5.993921e-04	ci right 6.670810e-04	k: 1360	n:2150000
Cons ci ratio: 1.367828e-01	ci left: 3.557386e-04	ci right 4.084131e-04	k: 820	n:2150000
KS ci ratio: 3.014677e-02	ci left: 7.685147e-03	ci right 7.920832e-03	k: 16775	n:2150000
INPP5D   2150000 perm   2204 sec   (975 perm/sec)   p_kst 7.802326e-03   p_cons 3.813953e-04   p_joint 6.325581e-04

Joint ci ratio: 1.059898e-01	ci left: 5.993212e-04	ci right 6.668441e-04	k: 1366	n:2160000
Cons ci ratio: 1.365336e-01	ci left: 3.554330e-04	ci right 4.079587e-04	k: 823	n:2160000
KS ci ratio: 3.008143e-02	ci left: 7.683110e-03	ci right 7.918213e-03	k: 16848	n:2160000
INPP5D   2160000 perm   2223 sec   (972 perm/sec)   p_kst 7.800000e-03   p_cons 3.810185e-04   p_joint 6.324074e-04

Joint ci ratio: 1.070132e-01	ci left: 5.848967e-04	ci right 6.514708e-04	k: 1340	n:2170000
Cons ci ratio: 1.363683e-01	ci left: 3.546853e-04	ci right 4.070318e-04	k: 825	n:2170000
KS ci ratio: 2.999775e-02	ci left: 7.690697e-03	ci right 7.925366e-03	k: 16942	n:2170000
INPP5D   2170000 perm   2241 sec   (968 perm/sec)   p_kst 7.807373e-03   p_cons 3.801843e-04   p_joint 6.175115e-04

Joint ci ratio: 1.067350e-01	ci left: 5.853388e-04	ci right 6.517792e-04	k: 1347	n:2180000
Cons ci ratio: 1.360393e-01	ci left: 3.548306e-04	ci right 4.070620e-04	k: 829	n:2180000
KS ci ratio: 2.991035e-02	ci left: 7.700492e-03	ci right 7.934764e-03	k: 17041	n:2180000
INPP5D   2180000 perm   2260 sec   (964 perm/sec)   p_kst 7.816972e-03   p_cons 3.802752e-04   p_joint 6.178899e-04

Joint ci ratio: 1.081904e-01	ci left: 5.666692e-04	ci right 6.319234e-04	k: 1311	n:2190000
Cons ci ratio: 1.358757e-01	ci left: 3.540925e-04	ci right 4.061476e-04	k: 831	n:2190000
KS ci ratio: 2.984741e-02	ci left: 7.697961e-03	ci right 7.931654e-03	k: 17113	n:2190000
INPP5D   2190000 perm   2279 sec   (961 perm/sec)   p_kst 7.814155e-03   p_cons 3.794521e-04   p_joint 5.986301e-04

Joint ci ratio: 1.079849e-01	ci left: 5.663047e-04	ci right 6.313852e-04	k: 1316	n:2200000
Cons ci ratio: 1.356314e-01	ci left: 3.538004e-04	ci right 4.057114e-04	k: 834	n:2200000
KS ci ratio: 2.979360e-02	ci left: 7.690941e-03	ci right 7.923994e-03	k: 17175	n:2200000
INPP5D   2200000 perm   2298 sec   (957 perm/sec)   p_kst 7.806818e-03   p_cons 3.790909e-04   p_joint 5.981818e-04

Joint ci ratio: 1.076584e-01	ci left: 5.672646e-04	ci right 6.322457e-04	k: 1324	n:2210000
Cons ci ratio: 1.353077e-01	ci left: 3.539481e-04	ci right 4.057469e-04	k: 838	n:2210000
KS ci ratio: 2.973139e-02	ci left: 7.688477e-03	ci right 7.920960e-03	k: 17247	n:2210000
INPP5D   2210000 perm   2317 sec   (954 perm/sec)   p_kst 7.804072e-03   p_cons 3.791855e-04   p_joint 5.990950e-04

Joint ci ratio: 1.073751e-01	ci left: 5.677777e-04	ci right 6.326356e-04	k: 1331	n:2220000
Cons ci ratio: 1.351468e-01	ci left: 3.532241e-04	ci right 4.048505e-04	k: 840	n:2220000
KS ci ratio: 2.967302e-02	ci left: 7.684247e-03	ci right 7.916139e-03	k: 17315	n:2220000
INPP5D   2220000 perm   2336 sec   (950 perm/sec)   p_kst 7.799550e-03   p_cons 3.783784e-04   p_joint 5.995495e-04

Joint ci ratio: 1.071741e-01	ci left: 5.674136e-04	ci right 6.321010e-04	k: 1336	n:2230000
Cons ci ratio: 1.349864e-01	ci left: 3.525067e-04	ci right 4.039622e-04	k: 842	n:2230000
KS ci ratio: 2.959870e-02	ci left: 7.688513e-03	ci right 7.919942e-03	k: 17402	n:2230000
INPP5D   2230000 perm   2355 sec   (947 perm/sec)   p_kst 7.803587e-03   p_cons 3.775785e-04   p_joint 5.991031e-04

Joint ci ratio: 1.067755e-01	ci left: 5.692254e-04	ci right 6.338628e-04	k: 1346	n:2240000
Cons ci ratio: 1.348266e-01	ci left: 3.517957e-04	ci right 4.030818e-04	k: 844	n:2240000
KS ci ratio: 2.953004e-02	ci left: 7.690083e-03	ci right 7.921013e-03	k: 17483	n:2240000
INPP5D   2240000 perm   2374 sec   (944 perm/sec)   p_kst 7.804911e-03   p_cons 3.767857e-04   p_joint 6.008929e-04

Joint ci ratio: 1.067360e-01	ci left: 5.671280e-04	ci right 6.315020e-04	k: 1347	n:2250000
Cons ci ratio: 1.342715e-01	ci left: 3.532386e-04	ci right 4.045061e-04	k: 851	n:2250000
KS ci ratio: 2.947031e-02	ci left: 7.687228e-03	ci right 7.917597e-03	k: 17554	n:2250000
INPP5D   2250000 perm   2393 sec   (940 perm/sec)   p_kst 7.801778e-03   p_cons 3.782222e-04   p_joint 5.986667e-04

Joint ci ratio: 1.064599e-01	ci left: 5.676334e-04	ci right 6.318876e-04	k: 1354	n:2260000
Cons ci ratio: 1.340358e-01	ci left: 3.529585e-04	ci right 4.040882e-04	k: 854	n:2260000
KS ci ratio: 2.939498e-02	ci left: 7.692744e-03	ci right 7.922679e-03	k: 17644	n:2260000
INPP5D   2260000 perm   2412 sec   (937 perm/sec)   p_kst 7.807080e-03   p_cons 3.778761e-04   p_joint 5.991150e-04

Joint ci ratio: 1.060303e-01	ci left: 5.698499e-04	ci right 6.340784e-04	k: 1365	n:2270000
Cons ci ratio: 1.337233e-01	ci left: 3.531067e-04	ci right 4.041292e-04	k: 858	n:2270000
KS ci ratio: 2.934107e-02	ci left: 7.687279e-03	ci right 7.916623e-03	k: 17709	n:2270000
INPP5D   2270000 perm   2431 sec   (934 perm/sec)   p_kst 7.801322e-03   p_cons 3.779736e-04   p_joint 6.013216e-04

Joint ci ratio: 1.058368e-01	ci left: 5.694854e-04	ci right 6.335485e-04	k: 1370	n:2280000
Cons ci ratio: 1.335680e-01	ci left: 3.524058e-04	ci right 4.032632e-04	k: 860	n:2280000
KS ci ratio: 2.927335e-02	ci left: 7.689264e-03	ci right 7.918129e-03	k: 17791	n:2280000
INPP5D   2280000 perm   2450 sec   (930 perm/sec)   p_kst 7.803070e-03   p_cons 3.771930e-04   p_joint 6.008772e-04

Joint ci ratio: 1.055293e-01	ci left: 5.703997e-04	ci right 6.343676e-04	k: 1378	n:2290000
Cons ci ratio: 1.332588e-01	ci left: 3.525554e-04	ci right 4.033072e-04	k: 864	n:2290000
KS ci ratio: 2.921104e-02	ci left: 7.688632e-03	ci right 7.916982e-03	k: 17867	n:2290000
INPP5D   2290000 perm   2470 sec   (927 perm/sec)   p_kst 7.802183e-03   p_cons 3.772926e-04   p_joint 6.017467e-04

Joint ci ratio: 1.053385e-01	ci left: 5.700363e-04	ci right 6.338407e-04	k: 1383	n:2300000
Cons ci ratio: 1.327228e-01	ci left: 3.539648e-04	ci right 4.046983e-04	k: 871	n:2300000
KS ci ratio: 2.914176e-02	ci left: 7.691890e-03	ci right 7.919787e-03	k: 17952	n:2300000
INPP5D   2300000 perm   2489 sec   (924 perm/sec)   p_kst 7.805217e-03   p_cons 3.786957e-04   p_joint 6.013043e-04

Joint ci ratio: 1.051109e-01	ci left: 5.700976e-04	ci right 6.337625e-04	k: 1389	n:2310000
Cons ci ratio: 1.325709e-01	ci left: 3.532695e-04	ci right 4.038409e-04	k: 873	n:2310000
KS ci ratio: 2.907379e-02	ci left: 7.694691e-03	ci right 7.922130e-03	k: 18036	n:2310000
INPP5D   2310000 perm   2509 sec   (921 perm/sec)   p_kst 7.807792e-03   p_cons 3.779221e-04   p_joint 6.012987e-04

Joint ci ratio: 1.048097e-01	ci left: 5.709981e-04	ci right 6.345696e-04	k: 1397	n:2320000
Cons ci ratio: 1.323439e-01	ci left: 3.529970e-04	ci right 4.034362e-04	k: 876	n:2320000
KS ci ratio: 2.899742e-02	ci left: 7.702176e-03	ci right 7.929228e-03	k: 18131	n:2320000
INPP5D   2320000 perm   2529 sec   (917 perm/sec)   p_kst 7.815086e-03   p_cons 3.775862e-04   p_joint 6.021552e-04

Joint ci ratio: 1.045855e-01	ci left: 5.710551e-04	ci right 6.344886e-04	k: 1403	n:2330000
Cons ci ratio: 1.319683e-01	ci left: 3.535570e-04	ci right 4.039215e-04	k: 881	n:2330000
KS ci ratio: 2.893765e-02	ci left: 7.701075e-03	ci right 7.927619e-03	k: 18206	n:2330000
INPP5D   2330000 perm   2548 sec   (914 perm/sec)   p_kst 7.813734e-03   p_cons 3.781116e-04   p_joint 6.021459e-04

Joint ci ratio: 1.043998e-01	ci left: 5.706956e-04	ci right 6.339697e-04	k: 1408	n:2340000
Cons ci ratio: 1.315957e-01	ci left: 3.541124e-04	ci right 4.044025e-04	k: 886	n:2340000
KS ci ratio: 2.887507e-02	ci left: 7.701681e-03	ci right 7.927745e-03	k: 18285	n:2340000
INPP5D   2340000 perm   2568 sec   (911 perm/sec)   p_kst 7.814103e-03   p_cons 3.786325e-04   p_joint 6.017094e-04

Joint ci ratio: 1.040679e-01	ci left: 5.719971e-04	ci right 6.352015e-04	k: 1417	n:2350000
Cons ci ratio: 1.315217e-01	ci left: 3.530171e-04	ci right 4.031212e-04	k: 887	n:2350000
KS ci ratio: 2.882001e-02	ci left: 7.698480e-03	ci right 7.924012e-03	k: 18355	n:2350000
INPP5D   2350000 perm   2589 sec   (908 perm/sec)   p_kst 7.810638e-03   p_cons 3.774468e-04   p_joint 6.029787e-04

Joint ci ratio: 1.038849e-01	ci left: 5.716369e-04	ci right 6.346837e-04	k: 1422	n:2360000
Cons ci ratio: 1.313739e-01	ci left: 3.523408e-04	ci right 4.022884e-04	k: 889	n:2360000
KS ci ratio: 2.876369e-02	ci left: 7.696148e-03	ci right 7.921164e-03	k: 18427	n:2360000
INPP5D   2360000 perm   2609 sec   (905 perm/sec)   p_kst 7.808051e-03   p_cons 3.766949e-04   p_joint 6.025424e-04

Joint ci ratio: 1.037029e-01	ci left: 5.712799e-04	ci right 6.341702e-04	k: 1427	n:2370000
Cons ci ratio: 1.313002e-01	ci left: 3.512622e-04	ci right 4.010267e-04	k: 890	n:2370000
KS ci ratio: 2.868895e-02	ci left: 7.703891e-03	ci right 7.928538e-03	k: 18523	n:2370000
INPP5D   2370000 perm   2628 sec   (902 perm/sec)   p_kst 7.815612e-03   p_cons 3.755274e-04   p_joint 6.021097e-04

Joint ci ratio: 1.036667e-01	ci left: 5.692888e-04	ci right 6.319367e-04	k: 1428	n:2380000
Cons ci ratio: 1.309333e-01	ci left: 3.518182e-04	ci right 4.015115e-04	k: 895	n:2380000
KS ci ratio: 2.863417e-02	ci left: 7.701139e-03	ci right 7.925271e-03	k: 18594	n:2380000
INPP5D   2380000 perm   2648 sec   (899 perm/sec)   p_kst 7.812605e-03   p_cons 3.760504e-04   p_joint 6.000000e-04

Joint ci ratio: 1.034859e-01	ci left: 5.689447e-04	ci right 6.314388e-04	k: 1433	n:2390000
Cons ci ratio: 1.304971e-01	ci left: 3.527746e-04	ci right 4.024240e-04	k: 901	n:2390000
KS ci ratio: 2.857585e-02	ci left: 7.700489e-03	ci right 7.924137e-03	k: 18670	n:2390000
INPP5D   2390000 perm   2668 sec   (896 perm/sec)   p_kst 7.811715e-03   p_cons 3.769874e-04   p_joint 5.995816e-04

Joint ci ratio: 1.031626e-01	ci left: 5.702272e-04	ci right 6.326547e-04	k: 1442	n:2400000
Cons ci ratio: 1.302087e-01	ci left: 3.529170e-04	ci right 4.024682e-04	k: 905	n:2400000
KS ci ratio: 2.851635e-02	ci left: 7.700671e-03	ci right 7.923852e-03	k: 18748	n:2400000
INPP5D   2400000 perm   2688 sec   (893 perm/sec)   p_kst 7.811667e-03   p_cons 3.770833e-04   p_joint 6.008333e-04

Joint ci ratio: 1.029843e-01	ci left: 5.698823e-04	ci right 6.321577e-04	k: 1447	n:2410000
Cons ci ratio: 1.299936e-01	ci left: 3.526569e-04	ci right 4.020835e-04	k: 908	n:2410000
KS ci ratio: 2.845493e-02	ci left: 7.702089e-03	ci right 7.924822e-03	k: 18829	n:2410000
INPP5D   2410000 perm   2708 sec   (890 perm/sec)   p_kst 7.812863e-03   p_cons 3.767635e-04   p_joint 6.004149e-04

Joint ci ratio: 1.082348e-01	ci left: 5.124094e-04	ci right 5.714411e-04	k: 1310	n:2420000
Cons ci ratio: 1.297797e-01	ci left: 3.523990e-04	ci right 4.017020e-04	k: 911	n:2420000
KS ci ratio: 2.839467e-02	ci left: 7.703085e-03	ci right 7.925368e-03	k: 18909	n:2420000
INPP5D   2420000 perm   2728 sec   (887 perm/sec)   p_kst 7.813636e-03   p_cons 3.764463e-04   p_joint 5.413223e-04

Joint ci ratio: 1.112921e-01	ci left: 4.818842e-04	ci right 5.390702e-04	k: 1239	n:2430000
Cons ci ratio: 1.295668e-01	ci left: 3.521434e-04	ci right 4.013235e-04	k: 914	n:2430000
KS ci ratio: 2.832877e-02	ci left: 7.707343e-03	ci right 7.929224e-03	k: 18997	n:2430000
INPP5D   2430000 perm   2748 sec   (884 perm/sec)   p_kst 7.817695e-03   p_cons 3.761317e-04   p_joint 5.098765e-04

Joint ci ratio: 1.112473e-01	ci left: 4.803076e-04	ci right 5.372821e-04	k: 1240	n:2440000
Cons ci ratio: 1.292845e-01	ci left: 3.522864e-04	ci right 4.013711e-04	k: 918	n:2440000
KS ci ratio: 2.827378e-02	ci left: 7.705868e-03	ci right 7.927269e-03	k: 19071	n:2440000
INPP5D   2440000 perm   2768 sec   (881 perm/sec)   p_kst 7.815984e-03   p_cons 3.762295e-04   p_joint 5.081967e-04

Joint ci ratio: 1.109794e-01	ci left: 4.807281e-04	ci right 5.376062e-04	k: 1246	n:2450000
Cons ci ratio: 1.290740e-01	ci left: 3.520334e-04	ci right 4.009969e-04	k: 921	n:2450000
KS ci ratio: 2.822580e-02	ci left: 7.700759e-03	ci right 7.921631e-03	k: 19136	n:2450000
INPP5D   2450000 perm   2789 sec   (878 perm/sec)   p_kst 7.810612e-03   p_cons 3.759184e-04   p_joint 5.085714e-04

Joint ci ratio: 1.106250e-01	ci left: 4.819359e-04	ci right 5.387629e-04	k: 1254	n:2460000
Cons ci ratio: 1.287254e-01	ci left: 3.525694e-04	ci right 4.014648e-04	k: 926	n:2460000
KS ci ratio: 2.816698e-02	ci left: 7.701746e-03	ci right 7.922179e-03	k: 19216	n:2460000
INPP5D   2460000 perm   2810 sec   (875 perm/sec)   p_kst 7.811382e-03   p_cons 3.764228e-04   p_joint 5.097561e-04

Joint ci ratio: 1.103615e-01	ci left: 4.823467e-04	ci right 5.390779e-04	k: 1260	n:2470000
Cons ci ratio: 1.284486e-01	ci left: 3.527093e-04	ci right 4.015109e-04	k: 930	n:2470000
KS ci ratio: 2.811660e-02	ci left: 7.698303e-03	ci right 7.918237e-03	k: 19285	n:2470000
INPP5D   2470000 perm   2832 sec   (872 perm/sec)   p_kst 7.807692e-03   p_cons 3.765182e-04   p_joint 5.101215e-04

Joint ci ratio: 1.106694e-01	ci left: 4.776572e-04	ci right 5.340037e-04	k: 1253	n:2480000
Cons ci ratio: 1.284487e-01	ci left: 3.512871e-04	ci right 3.998920e-04	k: 930	n:2480000
KS ci ratio: 2.805626e-02	ci left: 7.700495e-03	ci right 7.920012e-03	k: 19368	n:2480000
INPP5D   2480000 perm   2852 sec   (869 perm/sec)   p_kst 7.809677e-03   p_cons 3.750000e-04   p_joint 5.052419e-04

Joint ci ratio: 1.105813e-01	ci left: 4.765198e-04	ci right 5.326845e-04	k: 1255	n:2490000
Cons ci ratio: 1.283110e-01	ci left: 3.506537e-04	ci right 3.991150e-04	k: 932	n:2490000
KS ci ratio: 2.799414e-02	ci left: 7.703865e-03	ci right 7.922984e-03	k: 19454	n:2490000
INPP5D   2490000 perm   2873 sec   (867 perm/sec)   p_kst 7.812851e-03   p_cons 3.742972e-04   p_joint 5.040161e-04

Joint ci ratio: 1.103618e-01	ci left: 4.765585e-04	ci right 5.326091e-04	k: 1260	n:2500000
Cons ci ratio: 1.281052e-01	ci left: 3.504126e-04	ci right 3.987570e-04	k: 935	n:2500000
KS ci ratio: 2.794396e-02	ci left: 7.700854e-03	ci right 7.919488e-03	k: 19524	n:2500000
INPP5D   2500000 perm   2894 sec   (864 perm/sec)   p_kst 7.809600e-03   p_cons 3.740000e-04   p_joint 5.040000e-04

Joint ci ratio: 1.102308e-01	ci left: 4.758221e-04	ci right 5.317153e-04	k: 1263	n:2510000
Cons ci ratio: 1.279004e-01	ci left: 3.501735e-04	ci right 3.984018e-04	k: 938	n:2510000
KS ci ratio: 2.789189e-02	ci left: 7.699054e-03	ci right 7.917223e-03	k: 19597	n:2510000
INPP5D   2510000 perm   2915 sec   (861 perm/sec)   p_kst 7.807570e-03   p_cons 3.737052e-04   p_joint 5.031873e-04

Joint ci ratio: 1.099268e-01	ci left: 4.766352e-04	ci right 5.324595e-04	k: 1270	n:2520000
Cons ci ratio: 1.279005e-01	ci left: 3.487839e-04	ci right 3.968209e-04	k: 938	n:2520000
KS ci ratio: 2.784368e-02	ci left: 7.695298e-03	ci right 7.912978e-03	k: 19665	n:2520000
INPP5D   2520000 perm   2936 sec   (858 perm/sec)   p_kst 7.803571e-03   p_cons 3.722222e-04   p_joint 5.039683e-04

Joint ci ratio: 1.097974e-01	ci left: 4.759045e-04	ci right 5.315733e-04	k: 1273	n:2530000
Cons ci ratio: 1.274938e-01	ci left: 3.497011e-04	ci right 3.976996e-04	k: 944	n:2530000
KS ci ratio: 2.778721e-02	ci left: 7.696282e-03	ci right 7.913542e-03	k: 19745	n:2530000
INPP5D   2530000 perm   2958 sec   (855 perm/sec)   p_kst 7.804348e-03   p_cons 3.731225e-04   p_joint 5.031621e-04

Joint ci ratio: 1.097113e-01	ci left: 4.747966e-04	ci right 5.302895e-04	k: 1275	n:2540000
Cons ci ratio: 1.272248e-01	ci left: 3.498490e-04	ci right 3.977588e-04	k: 948	n:2540000
KS ci ratio: 2.772333e-02	ci left: 7.701561e-03	ci right 7.918461e-03	k: 19836	n:2540000
INPP5D   2540000 perm   2979 sec   (853 perm/sec)   p_kst 7.809449e-03   p_cons 3.732283e-04   p_joint 5.019685e-04

Joint ci ratio: 1.094116e-01	ci left: 4.756045e-04	ci right 5.310302e-04	k: 1282	n:2550000
Cons ci ratio: 1.270242e-01	ci left: 3.496161e-04	ci right 3.974129e-04	k: 951	n:2550000
KS ci ratio: 2.766199e-02	ci left: 7.705629e-03	ci right 7.922157e-03	k: 19924	n:2550000
INPP5D   2550000 perm   3000 sec   (850 perm/sec)   p_kst 7.813333e-03   p_cons 3.729412e-04   p_joint 5.027451e-04

Joint ci ratio: 1.104941e-01	ci left: 4.642495e-04	ci right 5.189220e-04	k: 1257	n:2560000
Cons ci ratio: 1.270243e-01	ci left: 3.482504e-04	ci right 3.958605e-04	k: 951	n:2560000
KS ci ratio: 2.760036e-02	ci left: 7.710055e-03	ci right 7.926217e-03	k: 20013	n:2560000
INPP5D   2560000 perm   3021 sec   (847 perm/sec)   p_kst 7.817578e-03   p_cons 3.714844e-04   p_joint 4.910156e-04

Joint ci ratio: 1.103188e-01	ci left: 4.639565e-04	ci right 5.185022e-04	k: 1261	n:2570000
Cons ci ratio: 1.268246e-01	ci left: 3.480255e-04	ci right 3.955245e-04	k: 954	n:2570000
KS ci ratio: 2.755779e-02	ci left: 7.704013e-03	ci right 7.919667e-03	k: 20075	n:2570000
INPP5D   2570000 perm   3042 sec   (845 perm/sec)   p_kst 7.811284e-03   p_cons 3.712062e-04   p_joint 4.906615e-04

Joint ci ratio: 1.099275e-01	ci left: 4.655505e-04	ci right 5.200769e-04	k: 1270	n:2580000
Cons ci ratio: 1.265598e-01	ci left: 3.481779e-04	ci right 3.955910e-04	k: 958	n:2580000
KS ci ratio: 2.749685e-02	ci left: 7.708411e-03	ci right 7.923704e-03	k: 20164	n:2580000
INPP5D   2580000 perm   3064 sec   (842 perm/sec)   p_kst 7.815504e-03   p_cons 3.713178e-04   p_joint 4.922481e-04

Joint ci ratio: 1.097980e-01	ci left: 4.648795e-04	ci right 5.192590e-04	k: 1273	n:2590000
Cons ci ratio: 1.263624e-01	ci left: 3.479552e-04	ci right 3.952585e-04	k: 961	n:2590000
KS ci ratio: 2.743905e-02	ci left: 7.711242e-03	ci right 7.926154e-03	k: 20249	n:2590000
INPP5D   2590000 perm   3087 sec   (839 perm/sec)   p_kst 7.818147e-03   p_cons 3.710425e-04   p_joint 4.915058e-04

Joint ci ratio: 1.095832e-01	ci left: 4.649618e-04	ci right 5.192377e-04	k: 1278	n:2600000
Cons ci ratio: 1.261658e-01	ci left: 3.477343e-04	ci right 3.949286e-04	k: 964	n:2600000
KS ci ratio: 2.738500e-02	ci left: 7.712142e-03	ci right 7.926649e-03	k: 20329	n:2600000
INPP5D   2600000 perm   3109 sec   (836 perm/sec)   p_kst 7.818846e-03   p_cons 3.707692e-04   p_joint 4.915385e-04

Joint ci ratio: 1.092420e-01	ci left: 4.661616e-04	ci right 5.203972e-04	k: 1286	n:2610000
Cons ci ratio: 1.258402e-01	ci left: 3.482573e-04	ci right 3.953915e-04	k: 969	n:2610000
KS ci ratio: 2.732519e-02	ci left: 7.716460e-03	ci right 7.930611e-03	k: 20418	n:2610000
INPP5D   2610000 perm   3131 sec   (834 perm/sec)   p_kst 7.822989e-03   p_cons 3.712644e-04   p_joint 4.927203e-04

Joint ci ratio: 1.090304e-01	ci left: 4.662387e-04	ci right 5.203715e-04	k: 1291	n:2620000
Cons ci ratio: 1.257754e-01	ci left: 3.472978e-04	ci right 3.942761e-04	k: 970	n:2620000
KS ci ratio: 2.727114e-02	ci left: 7.717713e-03	ci right 7.931468e-03	k: 20499	n:2620000
INPP5D   2620000 perm   3155 sec   (830 perm/sec)   p_kst 7.824046e-03   p_cons 3.702290e-04   p_joint 4.927481e-04

Joint ci ratio: 1.085691e-01	ci left: 4.685347e-04	ci right 5.226891e-04	k: 1302	n:2630000
Cons ci ratio: 1.253886e-01	ci left: 3.481869e-04	ci right 3.951299e-04	k: 976	n:2630000
KS ci ratio: 2.721208e-02	ci left: 7.721978e-03	ci right 7.935381e-03	k: 20588	n:2630000
INPP5D   2630000 perm   3177 sec   (828 perm/sec)   p_kst 7.828137e-03   p_cons 3.711027e-04   p_joint 4.950570e-04

Joint ci ratio: 1.085692e-01	ci left: 4.667599e-04	ci right 5.207092e-04	k: 1302	n:2640000
Cons ci ratio: 1.251965e-01	ci left: 3.479688e-04	ci right 3.948052e-04	k: 979	n:2640000
KS ci ratio: 2.716598e-02	ci left: 7.719063e-03	ci right 7.932019e-03	k: 20658	n:2640000
INPP5D   2640000 perm   3200 sec   (825 perm/sec)   p_kst 7.825000e-03   p_cons 3.708333e-04   p_joint 4.931818e-04

Joint ci ratio: 1.084445e-01	ci left: 4.660999e-04	ci right 5.199071e-04	k: 1305	n:2650000
Cons ci ratio: 1.250054e-01	ci left: 3.477524e-04	ci right 3.944828e-04	k: 982	n:2650000
KS ci ratio: 2.712144e-02	ci left: 7.715421e-03	ci right 7.927921e-03	k: 20726	n:2650000
INPP5D   2650000 perm   3223 sec   (822 perm/sec)   p_kst 7.821132e-03   p_cons 3.705660e-04   p_joint 4.924528e-04

Joint ci ratio: 1.083202e-01	ci left: 4.654448e-04	ci right 5.191110e-04	k: 1308	n:2660000
Cons ci ratio: 1.247518e-01	ci left: 3.479018e-04	ci right 3.945505e-04	k: 986	n:2660000
KS ci ratio: 2.707252e-02	ci left: 7.714420e-03	ci right 7.926503e-03	k: 20801	n:2660000
INPP5D   2660000 perm   3245 sec   (820 perm/sec)   p_kst 7.819925e-03   p_cons 3.706767e-04   p_joint 4.917293e-04

Joint ci ratio: 1.081963e-01	ci left: 4.647948e-04	ci right 5.183207e-04	k: 1311	n:2670000
Cons ci ratio: 1.244998e-01	ci left: 3.480502e-04	ci right 3.946176e-04	k: 990	n:2670000
KS ci ratio: 2.702908e-02	ci left: 7.710450e-03	ci right 7.922080e-03	k: 20868	n:2670000
INPP5D   2670000 perm   3268 sec   (817 perm/sec)   p_kst 7.815730e-03   p_cons 3.707865e-04   p_joint 4.910112e-04

Joint ci ratio: 1.078679e-01	ci left: 4.659649e-04	ci right 5.194524e-04	k: 1319	n:2680000
Cons ci ratio: 1.240623e-01	ci left: 3.492823e-04	ci right 3.958382e-04	k: 997	n:2680000
KS ci ratio: 2.697028e-02	ci left: 7.715406e-03	ci right 7.926704e-03	k: 20959	n:2680000
INPP5D   2680000 perm   3291 sec   (814 perm/sec)   p_kst 7.820522e-03   p_cons 3.720149e-04   p_joint 4.921642e-04

Joint ci ratio: 1.077455e-01	ci left: 4.653178e-04	ci right 5.186666e-04	k: 1322	n:2690000
Cons ci ratio: 1.238763e-01	ci left: 3.490645e-04	ci right 3.955165e-04	k: 1000	n:2690000
KS ci ratio: 2.691508e-02	ci left: 7.718480e-03	ci right 7.929422e-03	k: 21045	n:2690000
INPP5D   2690000 perm   3313 sec   (812 perm/sec)   p_kst 7.823420e-03   p_cons 3.717472e-04   p_joint 4.914498e-04

Joint ci ratio: 1.076642e-01	ci left: 4.643152e-04	ci right 5.175064e-04	k: 1324	n:2700000
Cons ci ratio: 1.236911e-01	ci left: 3.488484e-04	ci right 3.951972e-04	k: 1003	n:2700000
KS ci ratio: 2.686278e-02	ci left: 7.720059e-03	ci right 7.930628e-03	k: 21127	n:2700000
INPP5D   2700000 perm   3336 sec   (809 perm/sec)   p_kst 7.824815e-03   p_cons 3.714815e-04   p_joint 4.903704e-04

Joint ci ratio: 1.075426e-01	ci left: 4.636791e-04	ci right 5.167335e-04	k: 1327	n:2710000
Cons ci ratio: 1.234454e-01	ci left: 3.489915e-04	ci right 3.952605e-04	k: 1007	n:2710000
KS ci ratio: 2.681333e-02	ci left: 7.720161e-03	ci right 7.930339e-03	k: 21205	n:2710000
INPP5D   2710000 perm   3358 sec   (807 perm/sec)   p_kst 7.824723e-03   p_cons 3.715867e-04   p_joint 4.896679e-04

Joint ci ratio: 1.083622e-01	ci left: 4.548199e-04	ci right 5.072825e-04	k: 1307	n:2720000
Cons ci ratio: 1.232621e-01	ci left: 3.487773e-04	ci right 3.949443e-04	k: 1010	n:2720000
KS ci ratio: 2.675782e-02	ci left: 7.723914e-03	ci right 7.933753e-03	k: 21293	n:2720000
INPP5D   2720000 perm   3381 sec   (805 perm/sec)   p_kst 7.828309e-03   p_cons 3.713235e-04   p_joint 4.805147e-04

Joint ci ratio: 1.106278e-01	ci left: 4.342713e-04	ci right 4.854793e-04	k: 1254	n:2730000
Cons ci ratio: 1.230190e-01	ci left: 3.489198e-04	ci right 3.950079e-04	k: 1014	n:2730000
KS ci ratio: 2.671462e-02	ci left: 7.720727e-03	ci right 7.930136e-03	k: 21362	n:2730000
INPP5D   2730000 perm   3403 sec   (802 perm/sec)   p_kst 7.824908e-03   p_cons 3.714286e-04   p_joint 4.593407e-04

Joint ci ratio: 1.104958e-01	ci left: 4.337510e-04	ci right 4.848327e-04	k: 1257	n:2740000
Cons ci ratio: 1.228980e-01	ci left: 3.483539e-04	ci right 3.943186e-04	k: 1016	n:2740000
KS ci ratio: 2.666974e-02	ci left: 7.718651e-03	ci right 7.927646e-03	k: 21434	n:2740000
INPP5D   2740000 perm   3426 sec   (800 perm/sec)   p_kst 7.822628e-03   p_cons 3.708029e-04   p_joint 4.587591e-04

Joint ci ratio: 1.156206e-01	ci left: 3.936571e-04	ci right 4.423140e-04	k: 1148	n:2750000
Cons ci ratio: 1.225970e-01	ci left: 3.488495e-04	ci right 3.947587e-04	k: 1021	n:2750000
KS ci ratio: 2.661574e-02	ci left: 7.722009e-03	ci right 7.930665e-03	k: 21521	n:2750000
INPP5D   2750000 perm   3450 sec   (797 perm/sec)   p_kst 7.825818e-03   p_cons 3.712727e-04   p_joint 4.174545e-04

Joint ci ratio: 1.154199e-01	ci left: 3.936382e-04	ci right 4.422026e-04	k: 1152	n:2760000
Cons ci ratio: 1.223578e-01	ci left: 3.489904e-04	ci right 3.948221e-04	k: 1025	n:2760000
KS ci ratio: 2.656021e-02	ci left: 7.726423e-03	ci right 7.934756e-03	k: 21611	n:2760000
INPP5D   2760000 perm   3473 sec   (795 perm/sec)   p_kst 7.830072e-03   p_cons 3.713768e-04   p_joint 4.173913e-04

Joint ci ratio: 1.150710e-01	ci left: 3.946714e-04	ci right 4.432061e-04	k: 1159	n:2770000
Cons ci ratio: 1.221793e-01	ci left: 3.487804e-04	ci right 3.945129e-04	k: 1028	n:2770000
KS ci ratio: 2.651302e-02	ci left: 7.726143e-03	ci right 7.934093e-03	k: 21688	n:2770000
INPP5D   2770000 perm   3496 sec   (792 perm/sec)   p_kst 7.829603e-03   p_cons 3.711191e-04   p_joint 4.184116e-04

Joint ci ratio: 1.148732e-01	ci left: 3.946492e-04	ci right 4.430920e-04	k: 1163	n:2780000
Cons ci ratio: 1.217658e-01	ci left: 3.499670e-04	ci right 3.956885e-04	k: 1035	n:2780000
KS ci ratio: 2.646058e-02	ci left: 7.729082e-03	ci right 7.936693e-03	k: 21774	n:2780000
INPP5D   2780000 perm   3519 sec   (790 perm/sec)   p_kst 7.832374e-03   p_cons 3.723022e-04   p_joint 4.183453e-04

Joint ci ratio: 1.146763e-01	ci left: 3.946272e-04	ci right 4.429787e-04	k: 1167	n:2790000
Cons ci ratio: 1.214146e-01	ci left: 3.507978e-04	ci right 3.964862e-04	k: 1041	n:2790000
KS ci ratio: 2.641453e-02	ci left: 7.728439e-03	ci right 7.935667e-03	k: 21850	n:2790000
INPP5D   2790000 perm   3543 sec   (787 perm/sec)   p_kst 7.831541e-03   p_cons 3.731183e-04   p_joint 4.182796e-04

Joint ci ratio: 1.184388e-01	ci left: 3.679060e-04	ci right 4.145660e-04	k: 1094	n:2800000
Cons ci ratio: 1.212983e-01	ci left: 3.502375e-04	ci right 3.958062e-04	k: 1043	n:2800000
KS ci ratio: 2.636631e-02	ci left: 7.729221e-03	ci right 7.936085e-03	k: 21930	n:2800000
INPP5D   2800000 perm   3566 sec   (785 perm/sec)   p_kst 7.832143e-03   p_cons 3.725000e-04   p_joint 3.907143e-04

Joint ci ratio: 1.193141e-01	ci left: 3.610720e-04	ci right 4.072276e-04	k: 1078	n:2810000
Cons ci ratio: 1.206070e-01	ci left: 3.531324e-04	ci right 3.987972e-04	k: 1055	n:2810000
KS ci ratio: 2.631894e-02	ci left: 7.729643e-03	ci right 7.936142e-03	k: 22009	n:2810000
INPP5D   2810000 perm   3589 sec   (783 perm/sec)   p_kst 7.832384e-03   p_cons 3.754448e-04   p_joint 3.836299e-04

Joint ci ratio: 1.190936e-01	ci left: 3.611677e-04	ci right 4.072442e-04	k: 1082	n:2820000
Cons ci ratio: 1.203224e-01	ci left: 3.535998e-04	ci right 3.992094e-04	k: 1060	n:2820000
KS ci ratio: 2.627363e-02	ci left: 7.729006e-03	ci right 7.935127e-03	k: 22085	n:2820000
INPP5D   2820000 perm   3613 sec   (781 perm/sec)   p_kst 7.831560e-03   p_cons 3.758865e-04   p_joint 3.836879e-04

Joint ci ratio: 1.187105e-01	ci left: 3.622915e-04	ci right 4.083522e-04	k: 1089	n:2830000
Cons ci ratio: 1.202092e-01	ci left: 3.530358e-04	ci right 3.985268e-04	k: 1062	n:2830000
KS ci ratio: 2.622676e-02	ci left: 7.729427e-03	ci right 7.935186e-03	k: 22164	n:2830000
INPP5D   2830000 perm   3637 sec   (778 perm/sec)   p_kst 7.831802e-03   p_cons 3.752650e-04   p_joint 3.848057e-04

Joint ci ratio: 1.187106e-01	ci left: 3.610158e-04	ci right 4.069144e-04	k: 1089	n:2840000
Cons ci ratio: 1.199275e-01	ci left: 3.535004e-04	ci right 3.989369e-04	k: 1067	n:2840000
KS ci ratio: 2.618845e-02	ci left: 7.724948e-03	ci right 7.930283e-03	k: 22229	n:2840000
INPP5D   2840000 perm   3660 sec   (776 perm/sec)   p_kst 7.827113e-03   p_cons 3.757042e-04   p_joint 3.834507e-04

Joint ci ratio: 1.186018e-01	ci left: 3.604300e-04	ci right 4.062092e-04	k: 1091	n:2850000
Cons ci ratio: 1.197035e-01	ci left: 3.536215e-04	ci right 3.989827e-04	k: 1071	n:2850000
KS ci ratio: 2.614145e-02	ci left: 7.725730e-03	ci right 7.930711e-03	k: 22309	n:2850000
INPP5D   2850000 perm   3684 sec   (774 perm/sec)   p_kst 7.827719e-03   p_cons 3.757895e-04   p_joint 3.828070e-04

Joint ci ratio: 1.184393e-01	ci left: 3.601876e-04	ci right 4.058689e-04	k: 1094	n:2860000
Cons ci ratio: 1.195364e-01	ci left: 3.534026e-04	ci right 3.986680e-04	k: 1074	n:2860000
KS ci ratio: 2.610410e-02	ci left: 7.720948e-03	ci right 7.925505e-03	k: 22373	n:2860000
INPP5D   2860000 perm   3708 sec   (771 perm/sec)   p_kst 7.822727e-03   p_cons 3.755245e-04   p_joint 3.825175e-04

Joint ci ratio: 1.181161e-01	ci left: 3.609613e-04	ci right 4.066071e-04	k: 1100	n:2870000
Cons ci ratio: 1.193146e-01	ci left: 3.535234e-04	ci right 3.987142e-04	k: 1078	n:2870000
KS ci ratio: 2.606457e-02	ci left: 7.717584e-03	ci right 7.921738e-03	k: 22441	n:2870000
INPP5D   2870000 perm   3731 sec   (769 perm/sec)   p_kst 7.819164e-03   p_cons 3.756098e-04   p_joint 3.832753e-04

Joint ci ratio: 1.179021e-01	ci left: 3.610559e-04	ci right 4.066252e-04	k: 1104	n:2880000
Cons ci ratio: 1.192042e-01	ci left: 3.529696e-04	ci right 3.980449e-04	k: 1080	n:2880000
KS ci ratio: 2.601823e-02	ci left: 7.718384e-03	ci right 7.922191e-03	k: 22521	n:2880000
INPP5D   2880000 perm   3755 sec   (767 perm/sec)   p_kst 7.819792e-03   p_cons 3.750000e-04   p_joint 3.833333e-04

Joint ci ratio: 1.188747e-01	ci left: 3.537625e-04	ci right 3.988055e-04	k: 1086	n:2890000
Cons ci ratio: 1.190392e-01	ci left: 3.527553e-04	ci right 3.977366e-04	k: 1083	n:2890000
KS ci ratio: 2.597213e-02	ci left: 7.719179e-03	ci right 7.922640e-03	k: 22601	n:2890000
INPP5D   2890000 perm   3779 sec   (765 perm/sec)   p_kst 7.820415e-03   p_cons 3.747405e-04   p_joint 3.757785e-04

Joint ci ratio: 1.186566e-01	ci left: 3.538810e-04	ci right 3.988506e-04	k: 1090	n:2900000
Cons ci ratio: 1.189295e-01	ci left: 3.522081e-04	ci right 3.970753e-04	k: 1085	n:2900000
KS ci ratio: 2.592743e-02	ci left: 7.719283e-03	ci right 7.922391e-03	k: 22679	n:2900000
INPP5D   2900000 perm   3804 sec   (762 perm/sec)   p_kst 7.820345e-03   p_cons 3.741379e-04   p_joint 3.758621e-04

Joint ci ratio: 1.777999e-01	ci left: 1.521630e-04	ci right 1.821798e-04	k: 485	n:2910000
Cons ci ratio: 1.186023e-01	ci left: 3.529984e-04	ci right 3.978338e-04	k: 1091	n:2910000
KS ci ratio: 2.473648e-02	ci left: 8.450169e-03	ci right 8.662151e-03	k: 24897	n:2910000
INPP5D   2910000 perm   3828 sec   (760 perm/sec)   p_kst 8.555670e-03   p_cons 3.749141e-04   p_joint 1.666667e-04

Joint ci ratio: 1.776173e-01	ci left: 1.519691e-04	ci right 1.819136e-04	k: 486	n:2920000
Cons ci ratio: 1.182778e-01	ci left: 3.537834e-04	ci right 3.985870e-04	k: 1097	n:2920000
KS ci ratio: 2.469187e-02	ci left: 8.451861e-03	ci right 8.663499e-03	k: 24987	n:2920000
INPP5D   2920000 perm   3852 sec   (758 perm/sec)   p_kst 8.557192e-03   p_cons 3.756849e-04   p_joint 1.664384e-04

Joint ci ratio: 1.776174e-01	ci left: 1.514504e-04	ci right 1.812928e-04	k: 486	n:2930000
Cons ci ratio: 1.181165e-01	ci left: 3.535695e-04	ci right 3.982808e-04	k: 1100	n:2930000
KS ci ratio: 2.463809e-02	ci left: 8.459988e-03	ci right 8.671361e-03	k: 25096	n:2930000
INPP5D   2930000 perm   3877 sec   (756 perm/sec)   p_kst 8.565188e-03   p_cons 3.754266e-04   p_joint 1.658703e-04

Joint ci ratio: 1.772538e-01	ci left: 1.515853e-04	ci right 1.813866e-04	k: 488	n:2940000
Cons ci ratio: 1.177960e-01	ci left: 3.543475e-04	ci right 3.990271e-04	k: 1106	n:2940000
KS ci ratio: 2.460042e-02	ci left: 8.457241e-03	ci right 8.668218e-03	k: 25173	n:2940000
INPP5D   2940000 perm   3901 sec   (754 perm/sec)   p_kst 8.562245e-03   p_cons 3.761905e-04   p_joint 1.659864e-04

Joint ci ratio: 1.772538e-01	ci left: 1.510715e-04	ci right 1.807717e-04	k: 488	n:2950000
Cons ci ratio: 1.176367e-01	ci left: 3.541334e-04	ci right 3.987214e-04	k: 1109	n:2950000
KS ci ratio: 2.455949e-02	ci left: 8.456872e-03	ci right 8.667484e-03	k: 25257	n:2950000
INPP5D   2950000 perm   3926 sec   (751 perm/sec)   p_kst 8.561695e-03   p_cons 3.759322e-04   p_joint 1.654237e-04

Joint ci ratio: 1.770729e-01	ci left: 1.508840e-04	ci right 1.805138e-04	k: 489	n:2960000
Cons ci ratio: 1.173726e-01	ci left: 3.545765e-04	ci right 3.991131e-04	k: 1114	n:2960000
KS ci ratio: 2.452168e-02	ci left: 8.454491e-03	ci right 8.664715e-03	k: 25335	n:2960000
INPP5D   2960000 perm   3950 sec   (749 perm/sec)   p_kst 8.559122e-03   p_cons 3.763514e-04   p_joint 1.652027e-04

Joint ci ratio: 1.763544e-01	ci left: 1.516632e-04	ci right 1.813123e-04	k: 493	n:2970000
Cons ci ratio: 1.171626e-01	ci left: 3.546900e-04	ci right 3.991556e-04	k: 1118	n:2970000
KS ci ratio: 2.447192e-02	ci left: 8.460493e-03	ci right 8.670433e-03	k: 25438	n:2970000
INPP5D   2970000 perm   3975 sec   (747 perm/sec)   p_kst 8.564983e-03   p_cons 3.764310e-04   p_joint 1.659933e-04

Joint ci ratio: 1.756447e-01	ci left: 1.524374e-04	ci right 1.821052e-04	k: 497	n:2980000
Cons ci ratio: 1.169538e-01	ci left: 3.548027e-04	ci right 3.991977e-04	k: 1122	n:2980000
KS ci ratio: 2.443259e-02	ci left: 8.459451e-03	ci right 8.669023e-03	k: 25520	n:2980000
INPP5D   2980000 perm   4000 sec   (745 perm/sec)   p_kst 8.563758e-03   p_cons 3.765101e-04   p_joint 1.667785e-04

Joint ci ratio: 1.754686e-01	ci left: 1.522473e-04	ci right 1.818453e-04	k: 498	n:2990000
Cons ci ratio: 1.168498e-01	ci left: 3.542654e-04	ci right 3.985511e-04	k: 1124	n:2990000
KS ci ratio: 2.438768e-02	ci left: 8.462405e-03	ci right 8.671659e-03	k: 25614	n:2990000
INPP5D   2990000 perm   4024 sec   (743 perm/sec)   p_kst 8.566555e-03   p_cons 3.759197e-04   p_joint 1.665552e-04

Joint ci ratio: 1.751180e-01	ci left: 1.523773e-04	ci right 1.819350e-04	k: 500	n:3000000
Cons ci ratio: 1.165394e-01	ci left: 3.550261e-04	ci right 3.992809e-04	k: 1130	n:3000000
KS ci ratio: 2.435497e-02	ci left: 8.457056e-03	ci right 8.665894e-03	k: 25683	n:3000000
INPP5D   3000000 perm   4049 sec   (741 perm/sec)   p_kst 8.561000e-03   p_cons 3.766667e-04   p_joint 1.666667e-04

Joint ci ratio: 1.749435e-01	ci left: 1.521887e-04	ci right 1.816774e-04	k: 501	n:3010000
Cons ci ratio: 1.162826e-01	ci left: 3.554594e-04	ci right 3.996639e-04	k: 1135	n:3010000
KS ci ratio: 2.431430e-02	ci left: 8.457357e-03	ci right 8.665849e-03	k: 25769	n:3010000
INPP5D   3010000 perm   4074 sec   (739 perm/sec)   p_kst 8.561130e-03   p_cons 3.770764e-04   p_joint 1.664452e-04

Joint ci ratio: 1.747696e-01	ci left: 1.520014e-04	ci right 1.814214e-04	k: 502	n:3020000
Cons ci ratio: 1.161294e-01	ci left: 3.552469e-04	ci right 3.993627e-04	k: 1138	n:3020000
KS ci ratio: 2.427714e-02	ci left: 8.455353e-03	ci right 8.663472e-03	k: 25848	n:3020000
INPP5D   3020000 perm   4099 sec   (737 perm/sec)   p_kst 8.558940e-03   p_cons 3.768212e-04   p_joint 1.662252e-04

Joint ci ratio: 1.745961e-01	ci left: 1.518153e-04	ci right 1.811671e-04	k: 503	n:3030000
Cons ci ratio: 1.160276e-01	ci left: 3.547154e-04	ci right 3.987239e-04	k: 1140	n:3030000
KS ci ratio: 2.423073e-02	ci left: 8.459923e-03	ci right 8.667751e-03	k: 25947	n:3030000
INPP5D   3030000 perm   4124 sec   (735 perm/sec)   p_kst 8.563366e-03   p_cons 3.762376e-04   p_joint 1.660066e-04

Joint ci ratio: 1.742507e-01	ci left: 1.519451e-04	ci right 1.812577e-04	k: 505	n:3040000
Cons ci ratio: 1.159261e-01	ci left: 3.541873e-04	ci right 3.980893e-04	k: 1142	n:3040000
KS ci ratio: 2.419536e-02	ci left: 8.456943e-03	ci right 8.664390e-03	k: 26023	n:3040000
INPP5D   3040000 perm   4149 sec   (733 perm/sec)   p_kst 8.560197e-03   p_cons 3.756579e-04   p_joint 1.661184e-04

Joint ci ratio: 1.742508e-01	ci left: 1.514469e-04	ci right 1.806634e-04	k: 505	n:3050000
Cons ci ratio: 1.157238e-01	ci left: 3.542996e-04	ci right 3.981335e-04	k: 1146	n:3050000
KS ci ratio: 2.415921e-02	ci left: 8.454634e-03	ci right 8.661711e-03	k: 26101	n:3050000
INPP5D   3050000 perm   4174 sec   (731 perm/sec)   p_kst 8.557705e-03   p_cons 3.757377e-04   p_joint 1.655738e-04

Joint ci ratio: 1.737365e-01	ci left: 1.518897e-04	ci right 1.810961e-04	k: 508	n:3060000
Cons ci ratio: 1.156231e-01	ci left: 3.537764e-04	ci right 3.975049e-04	k: 1148	n:3060000
KS ci ratio: 2.411719e-02	ci left: 8.456564e-03	ci right 8.663322e-03	k: 26192	n:3060000
INPP5D   3060000 perm   4199 sec   (729 perm/sec)   p_kst 8.559477e-03   p_cons 3.751634e-04   p_joint 1.660131e-04

Joint ci ratio: 1.733961e-01	ci left: 1.520181e-04	ci right 1.811859e-04	k: 510	n:3070000
Cons ci ratio: 1.155728e-01	ci left: 3.529403e-04	ci right 3.965453e-04	k: 1149	n:3070000
KS ci ratio: 2.407030e-02	ci left: 8.462043e-03	ci right 8.668528e-03	k: 26294	n:3070000
INPP5D   3070000 perm   4225 sec   (727 perm/sec)   p_kst 8.564821e-03   p_cons 3.742671e-04   p_joint 1.661238e-04

Joint ci ratio: 1.728893e-01	ci left: 1.524564e-04	ci right 1.816139e-04	k: 513	n:3080000
Cons ci ratio: 1.155227e-01	ci left: 3.521097e-04	ci right 3.955919e-04	k: 1150	n:3080000
KS ci ratio: 2.402920e-02	ci left: 8.463614e-03	ci right 8.669779e-03	k: 26384	n:3080000
INPP5D   3080000 perm   4250 sec   (725 perm/sec)   p_kst 8.566234e-03   p_cons 3.733766e-04   p_joint 1.665584e-04

Joint ci ratio: 1.727214e-01	ci left: 1.522726e-04	ci right 1.813637e-04	k: 514	n:3090000
Cons ci ratio: 1.153724e-01	ci left: 3.519130e-04	ci right 3.953105e-04	k: 1153	n:3090000
KS ci ratio: 2.399150e-02	ci left: 8.462923e-03	ci right 8.668744e-03	k: 26467	n:3090000
INPP5D   3090000 perm   4276 sec   (723 perm/sec)   p_kst 8.565372e-03   p_cons 3.731392e-04   p_joint 1.663430e-04

Joint ci ratio: 1.727215e-01	ci left: 1.517814e-04	ci right 1.807787e-04	k: 514	n:3100000
Cons ci ratio: 1.152726e-01	ci left: 3.514044e-04	ci right 3.946991e-04	k: 1155	n:3100000
KS ci ratio: 2.396354e-02	ci left: 8.455503e-03	ci right 8.660901e-03	k: 26529	n:3100000
INPP5D   3100000 perm   4302 sec   (721 perm/sec)   p_kst 8.557742e-03   p_cons 3.725806e-04   p_joint 1.658065e-04

Joint ci ratio: 1.733963e-01	ci left: 1.500629e-04	ci right 1.788556e-04	k: 510	n:3110000
Cons ci ratio: 1.148264e-01	ci left: 3.530851e-04	ci right 3.964071e-04	k: 1164	n:3110000
KS ci ratio: 2.392797e-02	ci left: 8.453565e-03	ci right 8.658606e-03	k: 26608	n:3110000
INPP5D   3110000 perm   4328 sec   (719 perm/sec)   p_kst 8.555627e-03   p_cons 3.742765e-04   p_joint 1.639871e-04

Joint ci ratio: 1.728895e-01	ci left: 1.505018e-04	ci right 1.792855e-04	k: 513	n:3120000
Cons ci ratio: 1.146298e-01	ci left: 3.531987e-04	ci right 3.964554e-04	k: 1168	n:3120000
KS ci ratio: 2.389075e-02	ci left: 8.452913e-03	ci right 8.657616e-03	k: 26691	n:3120000
INPP5D   3120000 perm   4354 sec   (717 perm/sec)   p_kst 8.554808e-03   p_cons 3.743590e-04   p_joint 1.644231e-04

Joint ci ratio: 1.727216e-01	ci left: 1.503266e-04	ci right 1.790460e-04	k: 514	n:3130000
Cons ci ratio: 1.144341e-01	ci left: 3.533116e-04	ci right 3.965033e-04	k: 1172	n:3130000
KS ci ratio: 2.385774e-02	ci left: 8.449408e-03	ci right 8.653739e-03	k: 26765	n:3130000
INPP5D   3130000 perm   4380 sec   (715 perm/sec)   p_kst 8.551118e-03   p_cons 3.744409e-04   p_joint 1.642173e-04

Joint ci ratio: 1.725542e-01	ci left: 1.501526e-04	ci right 1.788080e-04	k: 515	n:3140000
Cons ci ratio: 1.143367e-01	ci left: 3.528051e-04	ci right 3.958957e-04	k: 1174	n:3140000
KS ci ratio: 2.381995e-02	ci left: 8.449408e-03	ci right 8.653411e-03	k: 26850	n:3140000
INPP5D   3140000 perm   4406 sec   (713 perm/sec)   p_kst 8.550955e-03   p_cons 3.738854e-04   p_joint 1.640127e-04

Joint ci ratio: 1.725542e-01	ci left: 1.496759e-04	ci right 1.782404e-04	k: 515	n:3150000
Cons ci ratio: 1.141426e-01	ci left: 3.529186e-04	ci right 3.959450e-04	k: 1178	n:3150000
KS ci ratio: 2.377878e-02	ci left: 8.451933e-03	ci right 8.655639e-03	k: 26943	n:3150000
INPP5D   3150000 perm   4432 sec   (711 perm/sec)   p_kst 8.553333e-03   p_cons 3.739683e-04   p_joint 1.634921e-04

Joint ci ratio: 1.744237e-01	ci left: 1.458724e-04	ci right 1.740443e-04	k: 504	n:3160000
Cons ci ratio: 1.140943e-01	ci left: 3.521092e-04	ci right 3.950175e-04	k: 1179	n:3160000
KS ci ratio: 2.374003e-02	ci left: 8.452869e-03	ci right 8.656261e-03	k: 27031	n:3160000
INPP5D   3160000 perm   4458 sec   (709 perm/sec)   p_kst 8.554114e-03   p_cons 3.731013e-04   p_joint 1.594937e-04

Joint ci ratio: 1.739079e-01	ci left: 1.463173e-04	ci right 1.744829e-04	k: 507	n:3170000
Cons ci ratio: 1.139014e-01	ci left: 3.522243e-04	ci right 3.950692e-04	k: 1183	n:3170000
KS ci ratio: 2.370456e-02	ci left: 8.451604e-03	ci right 8.654658e-03	k: 27112	n:3170000
INPP5D   3170000 perm   4485 sec   (707 perm/sec)   p_kst 8.552681e-03   p_cons 3.731861e-04   p_joint 1.599369e-04

Joint ci ratio: 1.737370e-01	ci left: 1.461580e-04	ci right 1.742623e-04	k: 508	n:3180000
Cons ci ratio: 1.136616e-01	ci left: 3.526443e-04	ci right 3.954439e-04	k: 1188	n:3180000
KS ci ratio: 2.366135e-02	ci left: 8.455975e-03	ci right 8.658758e-03	k: 27211	n:3180000
INPP5D   3180000 perm   4513 sec   (705 perm/sec)   p_kst 8.556918e-03   p_cons 3.735849e-04   p_joint 1.597484e-04

Joint ci ratio: 1.732272e-01	ci left: 1.465994e-04	ci right 1.746973e-04	k: 511	n:3190000
Cons ci ratio: 1.134709e-01	ci left: 3.527571e-04	ci right 3.954938e-04	k: 1192	n:3190000
KS ci ratio: 2.361838e-02	ci left: 8.460318e-03	ci right 8.662833e-03	k: 27310	n:3190000
INPP5D   3190000 perm   4539 sec   (703 perm/sec)   p_kst 8.561129e-03   p_cons 3.736677e-04   p_joint 1.601881e-04

Joint ci ratio: 1.732273e-01	ci left: 1.461413e-04	ci right 1.741513e-04	k: 511	n:3200000
Cons ci ratio: 1.134234e-01	ci left: 3.519584e-04	ci right 3.945792e-04	k: 1193	n:3200000
KS ci ratio: 2.357260e-02	ci left: 8.466809e-03	ci right 8.669081e-03	k: 27416	n:3200000
INPP5D   3200000 perm   4565 sec   (701 perm/sec)   p_kst 8.567500e-03   p_cons 3.728125e-04   p_joint 1.596875e-04

Joint ci ratio: 1.730584e-01	ci left: 1.459840e-04	ci right 1.739338e-04	k: 512	n:3210000
Cons ci ratio: 1.133286e-01	ci left: 3.514673e-04	ci right 3.939907e-04	k: 1195	n:3210000
KS ci ratio: 2.353701e-02	ci left: 8.466137e-03	ci right 8.668084e-03	k: 27499	n:3210000
INPP5D   3210000 perm   4592 sec   (699 perm/sec)   p_kst 8.566667e-03   p_cons 3.722741e-04   p_joint 1.595016e-04

Joint ci ratio: 1.789093e-01	ci left: 1.357335e-04	ci right 1.626945e-04	k: 479	n:3220000
Cons ci ratio: 1.132813e-01	ci left: 3.506776e-04	ci right 3.930865e-04	k: 1196	n:3220000
KS ci ratio: 2.349385e-02	ci left: 8.471027e-03	ci right 8.672715e-03	k: 27600	n:3220000
INPP5D   3220000 perm   4618 sec   (697 perm/sec)   p_kst 8.571429e-03   p_cons 3.714286e-04   p_joint 1.487578e-04

Joint ci ratio: 1.787233e-01	ci left: 1.356090e-04	ci right 1.625142e-04	k: 480	n:3230000
Cons ci ratio: 1.131396e-01	ci left: 3.504944e-04	ci right 3.928246e-04	k: 1199	n:3230000
KS ci ratio: 2.345648e-02	ci left: 8.471886e-03	ci right 8.673269e-03	k: 27688	n:3230000
INPP5D   3230000 perm   4645 sec   (695 perm/sec)   p_kst 8.572136e-03   p_cons 3.712074e-04   p_joint 1.486068e-04

Joint ci ratio: 1.783529e-01	ci left: 1.357801e-04	ci right 1.626575e-04	k: 482	n:3240000
Cons ci ratio: 1.129515e-01	ci left: 3.506122e-04	ci right 3.928817e-04	k: 1203	n:3240000
KS ci ratio: 2.342482e-02	ci left: 8.468751e-03	ci right 8.669784e-03	k: 27763	n:3240000
INPP5D   3240000 perm   4671 sec   (694 perm/sec)   p_kst 8.568827e-03   p_cons 3.712963e-04   p_joint 1.487654e-04

Joint ci ratio: 1.781685e-01	ci left: 1.356563e-04	ci right 1.624784e-04	k: 483	n:3250000
Cons ci ratio: 1.128111e-01	ci left: 3.504304e-04	ci right 3.926219e-04	k: 1206	n:3250000
KS ci ratio: 2.338862e-02	ci left: 8.469000e-03	ci right 8.669724e-03	k: 27849	n:3250000
INPP5D   3250000 perm   4697 sec   (692 perm/sec)   p_kst 8.568923e-03   p_cons 3.710769e-04   p_joint 1.486154e-04

Joint ci ratio: 1.781686e-01	ci left: 1.352402e-04	ci right 1.619800e-04	k: 483	n:3260000
Cons ci ratio: 1.127177e-01	ci left: 3.499517e-04	ci right 3.920484e-04	k: 1208	n:3260000
KS ci ratio: 2.335048e-02	ci left: 8.470772e-03	ci right 8.671206e-03	k: 27940	n:3260000
INPP5D   3260000 perm   4723 sec   (690 perm/sec)   p_kst 8.570552e-03   p_cons 3.705521e-04   p_joint 1.481595e-04

Joint ci ratio: 1.778016e-01	ci left: 1.354110e-04	ci right 1.621235e-04	k: 485	n:3270000
Cons ci ratio: 1.123928e-01	ci left: 3.509619e-04	ci right 3.930503e-04	k: 1215	n:3270000
KS ci ratio: 2.332050e-02	ci left: 8.466757e-03	ci right 8.666836e-03	k: 28012	n:3270000
INPP5D   3270000 perm   4750 sec   (688 perm/sec)   p_kst 8.566361e-03   p_cons 3.715596e-04   p_joint 1.483180e-04

Joint ci ratio: 1.776189e-01	ci left: 1.352894e-04	ci right 1.619476e-04	k: 486	n:3280000
Cons ci ratio: 1.123467e-01	ci left: 3.501882e-04	ci right 3.921655e-04	k: 1216	n:3280000
KS ci ratio: 2.327936e-02	ci left: 8.470951e-03	ci right 8.670771e-03	k: 28111	n:3280000
INPP5D   3280000 perm   4776 sec   (687 perm/sec)   p_kst 8.570427e-03   p_cons 3.707317e-04   p_joint 1.481707e-04

Joint ci ratio: 1.858132e-01	ci left: 1.226926e-04	ci right 1.481098e-04	k: 444	n:3290000
Cons ci ratio: 1.122545e-01	ci left: 3.497146e-04	ci right 3.915985e-04	k: 1218	n:3290000
KS ci ratio: 2.324799e-02	ci left: 8.468170e-03	ci right 8.667651e-03	k: 28187	n:3290000
INPP5D   3290000 perm   4803 sec   (685 perm/sec)   p_kst 8.567477e-03   p_cons 3.702128e-04   p_joint 1.349544e-04

Joint ci ratio: 1.853971e-01	ci left: 1.228987e-04	ci right 1.482951e-04	k: 446	n:3300000
Cons ci ratio: 1.118879e-01	ci left: 3.510112e-04	ci right 3.929039e-04	k: 1226	n:3300000
KS ci ratio: 2.321509e-02	ci left: 8.466610e-03	ci right 8.665769e-03	k: 28267	n:3300000
INPP5D   3300000 perm   4830 sec   (683 perm/sec)   p_kst 8.565758e-03   p_cons 3.715152e-04   p_joint 1.351515e-04

Joint ci ratio: 1.851900e-01	ci left: 1.228155e-04	ci right 1.481632e-04	k: 447	n:3310000
Cons ci ratio: 1.117059e-01	ci left: 3.511254e-04	ci right 3.929592e-04	k: 1230	n:3310000
KS ci ratio: 2.317903e-02	ci left: 8.467463e-03	ci right 8.666329e-03	k: 28355	n:3310000
INPP5D   3310000 perm   4857 sec   (682 perm/sec)   p_kst 8.566465e-03   p_cons 3.716012e-04   p_joint 1.350453e-04

Joint ci ratio: 1.849837e-01	ci left: 1.227328e-04	ci right 1.480321e-04	k: 448	n:3320000
Cons ci ratio: 1.116153e-01	ci left: 3.506534e-04	ci right 3.923948e-04	k: 1232	n:3320000
KS ci ratio: 2.314314e-02	ci left: 8.468311e-03	ci right 8.666885e-03	k: 28443	n:3320000
INPP5D   3320000 perm   4883 sec   (680 perm/sec)   p_kst 8.567169e-03   p_cons 3.710843e-04   p_joint 1.349398e-04

Joint ci ratio: 1.864430e-01	ci left: 1.203598e-04	ci right 1.453879e-04	k: 441	n:3330000
Cons ci ratio: 1.113897e-01	ci left: 3.510600e-04	ci right 3.927598e-04	k: 1237	n:3330000
KS ci ratio: 2.310864e-02	ci left: 8.468259e-03	ci right 8.666531e-03	k: 28528	n:3330000
INPP5D   3330000 perm   4911 sec   (678 perm/sec)   p_kst 8.566967e-03   p_cons 3.714715e-04   p_joint 1.324324e-04

Joint ci ratio: 1.864430e-01	ci left: 1.199995e-04	ci right 1.449526e-04	k: 441	n:3340000
Cons ci ratio: 1.110314e-01	ci left: 3.523375e-04	ci right 3.940456e-04	k: 1245	n:3340000
KS ci ratio: 2.307795e-02	ci left: 8.465528e-03	ci right 8.663469e-03	k: 28604	n:3340000
INPP5D   3340000 perm   4938 sec   (676 perm/sec)   p_kst 8.564072e-03   p_cons 3.727545e-04   p_joint 1.320359e-04

Joint ci ratio: 1.864431e-01	ci left: 1.196413e-04	ci right 1.445199e-04	k: 441	n:3350000
Cons ci ratio: 1.108093e-01	ci left: 3.527369e-04	ci right 3.944033e-04	k: 1250	n:3350000
KS ci ratio: 2.304780e-02	ci left: 8.462516e-03	ci right 8.660126e-03	k: 28679	n:3350000
INPP5D   3350000 perm   4965 sec   (675 perm/sec)   p_kst 8.560896e-03   p_cons 3.731343e-04   p_joint 1.316418e-04

Joint ci ratio: 1.864431e-01	ci left: 1.192852e-04	ci right 1.440898e-04	k: 441	n:3360000
Cons ci ratio: 1.106767e-01	ci left: 3.525552e-04	ci right 3.941471e-04	k: 1253	n:3360000
KS ci ratio: 2.301453e-02	ci left: 8.461890e-03	ci right 8.659196e-03	k: 28762	n:3360000
INPP5D   3360000 perm   4993 sec   (673 perm/sec)   p_kst 8.560119e-03   p_cons 3.729167e-04   p_joint 1.312500e-04

Joint ci ratio: 1.862326e-01	ci left: 1.192141e-04	ci right 1.439728e-04	k: 442	n:3370000
Cons ci ratio: 1.104567e-01	ci left: 3.529517e-04	ci right 3.945022e-04	k: 1258	n:3370000
KS ci ratio: 2.297779e-02	ci left: 8.463924e-03	ci right 8.660958e-03	k: 28854	n:3370000
INPP5D   3370000 perm   5021 sec   (671 perm/sec)   p_kst 8.562018e-03   p_cons 3.732938e-04   p_joint 1.311573e-04

Joint ci ratio: 1.860227e-01	ci left: 1.191435e-04	ci right 1.438564e-04	k: 443	n:3380000
Cons ci ratio: 1.103253e-01	ci left: 3.527705e-04	ci right 3.942471e-04	k: 1261	n:3380000
KS ci ratio: 2.294002e-02	ci left: 8.466828e-03	ci right 8.663601e-03	k: 28949	n:3380000
INPP5D   3380000 perm   5049 sec   (669 perm/sec)   p_kst 8.564793e-03   p_cons 3.730769e-04   p_joint 1.310651e-04

Joint ci ratio: 1.856051e-01	ci left: 1.193546e-04	ci right 1.440495e-04	k: 445	n:3390000
Cons ci ratio: 1.101944e-01	ci left: 3.525905e-04	ci right 3.939935e-04	k: 1264	n:3390000
KS ci ratio: 2.291040e-02	ci left: 8.463849e-03	ci right 8.660296e-03	k: 29024	n:3390000
INPP5D   3390000 perm   5077 sec   (668 perm/sec)   p_kst 8.561652e-03   p_cons 3.728614e-04   p_joint 1.312684e-04

Joint ci ratio: 1.851904e-01	ci left: 1.195645e-04	ci right 1.442413e-04	k: 447	n:3400000
Cons ci ratio: 1.099773e-01	ci left: 3.529835e-04	ci right 3.943457e-04	k: 1269	n:3400000
KS ci ratio: 2.287614e-02	ci left: 8.464397e-03	ci right 8.660559e-03	k: 29111	n:3400000
INPP5D   3400000 perm   5105 sec   (666 perm/sec)   p_kst 8.562059e-03   p_cons 3.732353e-04   p_joint 1.314706e-04

Joint ci ratio: 1.851904e-01	ci left: 1.192138e-04	ci right 1.438183e-04	k: 447	n:3410000
Cons ci ratio: 1.097614e-01	ci left: 3.533744e-04	ci right 3.946958e-04	k: 1274	n:3410000
KS ci ratio: 2.284005e-02	ci left: 8.466400e-03	ci right 8.662295e-03	k: 29203	n:3410000
INPP5D   3410000 perm   5133 sec   (664 perm/sec)   p_kst 8.563930e-03   p_cons 3.736070e-04   p_joint 1.310850e-04

Joint ci ratio: 1.851904e-01	ci left: 1.188653e-04	ci right 1.433978e-04	k: 447	n:3420000
Cons ci ratio: 1.095468e-01	ci left: 3.537630e-04	ci right 3.950438e-04	k: 1279	n:3420000
KS ci ratio: 2.280768e-02	ci left: 8.465775e-03	ci right 8.661374e-03	k: 29286	n:3420000
INPP5D   3420000 perm   5161 sec   (663 perm/sec)   p_kst 8.563158e-03   p_cons 3.739766e-04   p_joint 1.307018e-04

Joint ci ratio: 1.847784e-01	ci left: 1.190748e-04	ci right 1.435898e-04	k: 449	n:3430000
Cons ci ratio: 1.092909e-01	ci left: 3.544331e-04	ci right 3.956892e-04	k: 1285	n:3430000
KS ci ratio: 2.277778e-02	ci left: 8.463415e-03	ci right 8.658699e-03	k: 29363	n:3430000
INPP5D   3430000 perm   5190 sec   (661 perm/sec)   p_kst 8.560641e-03   p_cons 3.746356e-04   p_joint 1.309038e-04

Joint ci ratio: 1.498700e-01	ci left: 1.839349e-04	ci right 2.140100e-04	k: 683	n:3440000
Cons ci ratio: 1.090791e-01	ci left: 3.548165e-04	ci right 3.960321e-04	k: 1290	n:3440000
KS ci ratio: 2.274450e-02	ci left: 8.463669e-03	ci right 8.658671e-03	k: 29449	n:3440000
INPP5D   3440000 perm   5218 sec   (659 perm/sec)   p_kst 8.560756e-03   p_cons 3.750000e-04   p_joint 1.985465e-04

Joint ci ratio: 1.496514e-01	ci left: 1.839597e-04	ci right 2.139911e-04	k: 685	n:3450000
Cons ci ratio: 1.089526e-01	ci left: 3.546339e-04	ci right 3.957775e-04	k: 1293	n:3450000
KS ci ratio: 2.270593e-02	ci left: 8.467958e-03	ci right 8.662723e-03	k: 29549	n:3450000
INPP5D   3450000 perm   5246 sec   (658 perm/sec)   p_kst 8.564928e-03   p_cons 3.747826e-04   p_joint 1.985507e-04

Joint ci ratio: 1.492169e-01	ci left: 1.845409e-04	ci right 2.145719e-04	k: 689	n:3460000
Cons ci ratio: 1.086590e-01	ci left: 3.555770e-04	ci right 3.967117e-04	k: 1300	n:3460000
KS ci ratio: 2.267682e-02	ci left: 8.465325e-03	ci right 8.659777e-03	k: 29625	n:3460000
INPP5D   3460000 perm   5274 sec   (656 perm/sec)   p_kst 8.562139e-03   p_cons 3.757225e-04   p_joint 1.991329e-04

Joint ci ratio: 1.491090e-01	ci left: 1.842865e-04	ci right 2.142525e-04	k: 690	n:3470000
Cons ci ratio: 1.084923e-01	ci left: 3.556738e-04	ci right 3.967525e-04	k: 1304	n:3470000
KS ci ratio: 2.264513e-02	ci left: 8.464713e-03	ci right 8.658875e-03	k: 29708	n:3470000
INPP5D   3470000 perm   5302 sec   (654 perm/sec)   p_kst 8.561383e-03   p_cons 3.757925e-04   p_joint 1.988473e-04

Joint ci ratio: 1.555462e-01	ci left: 1.682779e-04	ci right 1.969324e-04	k: 634	n:3480000
Cons ci ratio: 1.083264e-01	ci left: 3.557700e-04	ci right 3.967930e-04	k: 1308	n:3480000
KS ci ratio: 2.261128e-02	ci left: 8.465819e-03	ci right 8.659713e-03	k: 29797	n:3480000
INPP5D   3480000 perm   5330 sec   (653 perm/sec)   p_kst 8.562356e-03   p_cons 3.758621e-04   p_joint 1.821839e-04

Joint ci ratio: 1.554239e-01	ci left: 1.680712e-04	ci right 1.966658e-04	k: 635	n:3490000
Cons ci ratio: 1.082025e-01	ci left: 3.555869e-04	ci right 3.965389e-04	k: 1311	n:3490000
KS ci ratio: 2.258253e-02	ci left: 8.463215e-03	ci right 8.656800e-03	k: 29873	n:3490000
INPP5D   3490000 perm   5358 sec   (651 perm/sec)   p_kst 8.559599e-03   p_cons 3.756447e-04   p_joint 1.819484e-04

Joint ci ratio: 1.553019e-01	ci left: 1.678656e-04	ci right 1.964007e-04	k: 636	n:3500000
Cons ci ratio: 1.081202e-01	ci left: 3.551269e-04	ci right 3.959928e-04	k: 1313	n:3500000
KS ci ratio: 2.255427e-02	ci left: 8.460342e-03	ci right 8.653615e-03	k: 29948	n:3500000
INPP5D   3500000 perm   5387 sec   (650 perm/sec)   p_kst 8.556571e-03   p_cons 3.751429e-04   p_joint 1.817143e-04

Joint ci ratio: 1.550587e-01	ci left: 1.679350e-04	ci right 1.964331e-04	k: 638	n:3510000
Cons ci ratio: 1.080380e-01	ci left: 3.546695e-04	ci right 3.954498e-04	k: 1315	n:3510000
KS ci ratio: 2.251439e-02	ci left: 8.466268e-03	ci right 8.659331e-03	k: 30054	n:3510000
INPP5D   3510000 perm   5416 sec   (648 perm/sec)   p_kst 8.562393e-03   p_cons 3.746439e-04   p_joint 1.817664e-04

Joint ci ratio: 1.546959e-01	ci left: 1.682771e-04	ci right 1.967603e-04	k: 641	n:3520000
Cons ci ratio: 1.078742e-01	ci left: 3.547676e-04	ci right 3.954934e-04	k: 1319	n:3520000
KS ci ratio: 2.248677e-02	ci left: 8.463120e-03	ci right 8.655871e-03	k: 30128	n:3520000
INPP5D   3520000 perm   5444 sec   (647 perm/sec)   p_kst 8.559091e-03   p_cons 3.747159e-04   p_joint 1.821023e-04

Joint ci ratio: 1.544555e-01	ci left: 1.683451e-04	ci right 1.967914e-04	k: 643	n:3530000
Cons ci ratio: 1.078334e-01	ci left: 3.540383e-04	ci right 3.946640e-04	k: 1320	n:3530000
KS ci ratio: 2.245961e-02	ci left: 8.459709e-03	ci right 8.652147e-03	k: 30201	n:3530000
INPP5D   3530000 perm   5473 sec   (645 perm/sec)   p_kst 8.555524e-03   p_cons 3.739377e-04   p_joint 1.821530e-04

Joint ci ratio: 1.542162e-01	ci left: 1.684127e-04	ci right 1.968222e-04	k: 645	n:3540000
Cons ci ratio: 1.075488e-01	ci left: 3.549623e-04	ci right 3.955798e-04	k: 1327	n:3540000
KS ci ratio: 2.241987e-02	ci left: 8.465868e-03	ci right 8.658101e-03	k: 30308	n:3540000
INPP5D   3540000 perm   5503 sec   (643 perm/sec)   p_kst 8.561582e-03   p_cons 3.748588e-04   p_joint 1.822034e-04

Joint ci ratio: 1.536228e-01	ci left: 1.692925e-04	ci right 1.977304e-04	k: 650	n:3550000
Cons ci ratio: 1.074679e-01	ci left: 3.545106e-04	ci right 3.950440e-04	k: 1329	n:3550000
KS ci ratio: 2.238961e-02	ci left: 8.464990e-03	ci right 8.656940e-03	k: 30390	n:3550000
INPP5D   3550000 perm   5532 sec   (642 perm/sec)   p_kst 8.560563e-03   p_cons 3.743662e-04   p_joint 1.830986e-04

Joint ci ratio: 1.535050e-01	ci left: 1.690871e-04	ci right 1.974667e-04	k: 651	n:3560000
Cons ci ratio: 1.071461e-01	ci left: 3.557017e-04	ci right 3.962418e-04	k: 1337	n:3560000
KS ci ratio: 2.235615e-02	ci left: 8.466631e-03	ci right 8.658327e-03	k: 30481	n:3560000
INPP5D   3560000 perm   5562 sec   (640 perm/sec)   p_kst 8.562079e-03   p_cons 3.755618e-04   p_joint 1.828652e-04

Joint ci ratio: 1.549377e-01	ci left: 1.653818e-04	ci right 1.934227e-04	k: 639	n:3570000
Cons ci ratio: 1.069464e-01	ci left: 3.560684e-04	ci right 3.965699e-04	k: 1342	n:3570000
KS ci ratio: 2.232431e-02	ci left: 8.467148e-03	ci right 8.658580e-03	k: 30568	n:3570000
INPP5D   3570000 perm   5593 sec   (638 perm/sec)   p_kst 8.562465e-03   p_cons 3.759104e-04   p_joint 1.789916e-04

Joint ci ratio: 1.545758e-01	ci left: 1.657254e-04	ci right 1.937528e-04	k: 642	n:3580000
Cons ci ratio: 1.069067e-01	ci left: 3.553457e-04	ci right 3.957490e-04	k: 1343	n:3580000
KS ci ratio: 2.229591e-02	ci left: 8.465163e-03	ci right 8.656303e-03	k: 30646	n:3580000
INPP5D   3580000 perm   5622 sec   (637 perm/sec)   p_kst 8.560335e-03   p_cons 3.751397e-04   p_joint 1.793296e-04

Joint ci ratio: 1.539782e-01	ci left: 1.666027e-04	ci right 1.946596e-04	k: 647	n:3590000
Cons ci ratio: 1.065899e-01	ci left: 3.565248e-04	ci right 3.969345e-04	k: 1351	n:3590000
KS ci ratio: 2.226140e-02	ci left: 8.467898e-03	ci right 8.658801e-03	k: 30741	n:3590000
INPP5D   3590000 perm   5651 sec   (635 perm/sec)   p_kst 8.562953e-03   p_cons 3.763231e-04   p_joint 1.802228e-04

Joint ci ratio: 1.537411e-01	ci left: 1.666741e-04	ci right 1.946958e-04	k: 649	n:3600000
Cons ci ratio: 1.065505e-01	ci left: 3.558048e-04	ci right 3.961171e-04	k: 1352	n:3600000
KS ci ratio: 2.222996e-02	ci left: 8.468409e-03	ci right 8.659050e-03	k: 30828	n:3600000
INPP5D   3600000 perm   5681 sec   (634 perm/sec)   p_kst 8.563333e-03   p_cons 3.755556e-04   p_joint 1.802778e-04

Joint ci ratio: 1.536230e-01	ci left: 1.664788e-04	ci right 1.944441e-04	k: 650	n:3610000
Cons ci ratio: 1.063933e-01	ci left: 3.558977e-04	ci right 3.961573e-04	k: 1356	n:3610000
KS ci ratio: 2.219866e-02	ci left: 8.468916e-03	ci right 8.659297e-03	k: 30915	n:3610000
INPP5D   3610000 perm   5710 sec   (632 perm/sec)   p_kst 8.563712e-03   p_cons 3.756233e-04   p_joint 1.800554e-04

Joint ci ratio: 1.535052e-01	ci left: 1.662845e-04	ci right 1.941938e-04	k: 651	n:3620000
Cons ci ratio: 1.061589e-01	ci left: 3.565280e-04	ci right 3.967644e-04	k: 1362	n:3620000
KS ci ratio: 2.216460e-02	ci left: 8.471619e-03	ci right 8.661765e-03	k: 31010	n:3620000
INPP5D   3620000 perm   5740 sec   (631 perm/sec)   p_kst 8.566298e-03   p_cons 3.762431e-04   p_joint 1.798343e-04

Joint ci ratio: 1.533876e-01	ci left: 1.660913e-04	ci right 1.939449e-04	k: 652	n:3630000
Cons ci ratio: 1.060422e-01	ci left: 3.563503e-04	ci right 3.965198e-04	k: 1365	n:3630000
KS ci ratio: 2.214003e-02	ci left: 8.467184e-03	ci right 8.657017e-03	k: 31079	n:3630000
INPP5D   3630000 perm   5769 sec   (629 perm/sec)   p_kst 8.561708e-03   p_cons 3.760331e-04   p_joint 1.796143e-04

Joint ci ratio: 1.532703e-01	ci left: 1.658992e-04	ci right 1.936973e-04	k: 653	n:3640000
Cons ci ratio: 1.057715e-01	ci left: 3.572435e-04	ci right 3.974044e-04	k: 1372	n:3640000
KS ci ratio: 2.211018e-02	ci left: 8.466872e-03	ci right 8.656438e-03	k: 31163	n:3640000
INPP5D   3640000 perm   5799 sec   (628 perm/sec)   p_kst 8.561264e-03   p_cons 3.769231e-04   p_joint 1.793956e-04

Joint ci ratio: 1.530365e-01	ci left: 1.659716e-04	ci right 1.937356e-04	k: 655	n:3650000
Cons ci ratio: 1.055795e-01	ci left: 3.575984e-04	ci right 3.977217e-04	k: 1377	n:3650000
KS ci ratio: 2.207546e-02	ci left: 8.470376e-03	ci right 8.659720e-03	k: 31261	n:3650000
INPP5D   3650000 perm   5829 sec   (626 perm/sec)   p_kst 8.564658e-03   p_cons 3.772603e-04   p_joint 1.794521e-04

Joint ci ratio: 1.528038e-01	ci left: 1.660437e-04	ci right 1.937736e-04	k: 657	n:3660000
Cons ci ratio: 1.054265e-01	ci left: 3.576854e-04	ci right 3.977568e-04	k: 1381	n:3660000
KS ci ratio: 2.204941e-02	ci left: 8.467340e-03	ci right 8.656389e-03	k: 31335	n:3660000
INPP5D   3660000 perm   5859 sec   (625 perm/sec)   p_kst 8.561475e-03   p_cons 3.773224e-04   p_joint 1.795082e-04

Joint ci ratio: 1.525721e-01	ci left: 1.661154e-04	ci right 1.938114e-04	k: 659	n:3670000
Cons ci ratio: 1.053123e-01	ci left: 3.575067e-04	ci right 3.975119e-04	k: 1384	n:3670000
KS ci ratio: 2.201993e-02	ci left: 8.467031e-03	ci right 8.655817e-03	k: 31419	n:3670000
INPP5D   3670000 perm   5889 sec   (623 perm/sec)   p_kst 8.561035e-03   p_cons 3.771117e-04   p_joint 1.795640e-04

Joint ci ratio: 1.523414e-01	ci left: 1.661868e-04	ci right 1.938489e-04	k: 661	n:3680000
Cons ci ratio: 1.052364e-01	ci left: 3.570644e-04	ci right 3.969895e-04	k: 1386	n:3680000
KS ci ratio: 2.199161e-02	ci left: 8.465912e-03	ci right 8.654428e-03	k: 31500	n:3680000
INPP5D   3680000 perm   5920 sec   (622 perm/sec)   p_kst 8.559783e-03   p_cons 3.766304e-04   p_joint 1.796196e-04

Joint ci ratio: 1.518832e-01	ci left: 1.667791e-04	ci right 1.944488e-04	k: 665	n:3690000
Cons ci ratio: 1.051985e-01	ci left: 3.563606e-04	ci right 3.961918e-04	k: 1387	n:3690000
KS ci ratio: 2.196060e-02	ci left: 8.466956e-03	ci right 8.655226e-03	k: 31589	n:3690000
INPP5D   3690000 perm   5951 sec   (620 perm/sec)   p_kst 8.560705e-03   p_cons 3.758808e-04   p_joint 1.802168e-04

Joint ci ratio: 1.517693e-01	ci left: 1.665884e-04	ci right 1.942038e-04	k: 666	n:3700000
Cons ci ratio: 1.050472e-01	ci left: 3.564501e-04	ci right 3.962305e-04	k: 1391	n:3700000
KS ci ratio: 2.192797e-02	ci left: 8.469338e-03	ci right 8.657378e-03	k: 31683	n:3700000
INPP5D   3700000 perm   5982 sec   (619 perm/sec)   p_kst 8.562973e-03   p_cons 3.759459e-04   p_joint 1.800000e-04

Joint ci ratio: 1.516557e-01	ci left: 1.663987e-04	ci right 1.939601e-04	k: 667	n:3710000
Cons ci ratio: 1.049719e-01	ci left: 3.560142e-04	ci right 3.957158e-04	k: 1393	n:3710000
KS ci ratio: 2.190314e-02	ci left: 8.465811e-03	ci right 8.653556e-03	k: 31755	n:3710000
INPP5D   3710000 perm   6012 sec   (617 perm/sec)   p_kst 8.559299e-03   p_cons 3.754717e-04   p_joint 1.797844e-04

Joint ci ratio: 1.514292e-01	ci left: 1.664686e-04	ci right 1.939967e-04	k: 669	n:3720000
Cons ci ratio: 1.049343e-01	ci left: 3.553190e-04	ci right 3.949279e-04	k: 1394	n:3720000
KS ci ratio: 2.187701e-02	ci left: 8.463371e-03	ci right 8.650836e-03	k: 31831	n:3720000
INPP5D   3720000 perm   6042 sec   (616 perm/sec)   p_kst 8.556720e-03   p_cons 3.747312e-04   p_joint 1.798387e-04

Joint ci ratio: 1.509791e-01	ci left: 1.670541e-04	ci right 1.945895e-04	k: 673	n:3730000
Cons ci ratio: 1.048217e-01	ci left: 3.551496e-04	ci right 3.946945e-04	k: 1397	n:3730000
KS ci ratio: 2.184682e-02	ci left: 8.464145e-03	ci right 8.651365e-03	k: 31919	n:3730000
INPP5D   3730000 perm   6074 sec   (614 perm/sec)   p_kst 8.557373e-03   p_cons 3.745308e-04   p_joint 1.804290e-04

Joint ci ratio: 1.505330e-01	ci left: 1.676366e-04	ci right 1.951791e-04	k: 677	n:3740000
Cons ci ratio: 1.046347e-01	ci left: 3.555018e-04	ci right 3.950110e-04	k: 1402	n:3740000
KS ci ratio: 2.181573e-02	ci left: 8.465712e-03	ci right 8.652697e-03	k: 32010	n:3740000
INPP5D   3740000 perm   6104 sec   (613 perm/sec)   p_kst 8.558824e-03   p_cons 3.748663e-04   p_joint 1.810160e-04

Joint ci ratio: 1.504222e-01	ci left: 1.674462e-04	ci right 1.949353e-04	k: 678	n:3750000
Cons ci ratio: 1.044858e-01	ci left: 3.555926e-04	ci right 3.950522e-04	k: 1406	n:3750000
KS ci ratio: 2.178204e-02	ci left: 8.469393e-03	ci right 8.656167e-03	k: 32109	n:3750000
INPP5D   3750000 perm   6135 sec   (611 perm/sec)   p_kst 8.562400e-03   p_cons 3.749333e-04   p_joint 1.808000e-04

Joint ci ratio: 1.503115e-01	ci left: 1.672568e-04	ci right 1.946928e-04	k: 679	n:3760000
Cons ci ratio: 1.043746e-01	ci left: 3.554239e-04	ci right 3.948203e-04	k: 1409	n:3760000
KS ci ratio: 2.175293e-02	ci left: 8.469616e-03	ci right 8.656142e-03	k: 32195	n:3760000
INPP5D   3760000 perm   6166 sec   (610 perm/sec)   p_kst 8.562500e-03   p_cons 3.747340e-04   p_joint 1.805851e-04

Joint ci ratio: 1.502011e-01	ci left: 1.670685e-04	ci right 1.944516e-04	k: 680	n:3770000
Cons ci ratio: 1.043007e-01	ci left: 3.549978e-04	ci right 3.943173e-04	k: 1411	n:3770000
KS ci ratio: 2.172597e-02	ci left: 8.468255e-03	ci right 8.654517e-03	k: 32275	n:3770000
INPP5D   3770000 perm   6196 sec   (608 perm/sec)   p_kst 8.561008e-03   p_cons 3.742706e-04   p_joint 1.803714e-04

Joint ci ratio: 1.502012e-01	ci left: 1.666265e-04	ci right 1.939372e-04	k: 680	n:3780000
Cons ci ratio: 1.041533e-01	ci left: 3.550893e-04	ci right 3.943600e-04	k: 1415	n:3780000
KS ci ratio: 2.169606e-02	ci left: 8.469269e-03	ci right 8.655294e-03	k: 32364	n:3780000
INPP5D   3780000 perm   6227 sec   (607 perm/sec)   p_kst 8.561905e-03   p_cons 3.743386e-04   p_joint 1.798942e-04

Joint ci ratio: 1.498714e-01	ci left: 1.669487e-04	ci right 1.942467e-04	k: 683	n:3790000
Cons ci ratio: 1.039699e-01	ci left: 3.554373e-04	ci right 3.946730e-04	k: 1420	n:3790000
KS ci ratio: 2.166864e-02	ci left: 8.468442e-03	ci right 8.654210e-03	k: 32446	n:3790000
INPP5D   3790000 perm   6258 sec   (606 perm/sec)   p_kst 8.560950e-03   p_cons 3.746702e-04   p_joint 1.802111e-04

Joint ci ratio: 1.498714e-01	ci left: 1.665093e-04	ci right 1.937355e-04	k: 683	n:3800000
Cons ci ratio: 1.038603e-01	ci left: 3.552709e-04	ci right 3.944444e-04	k: 1423	n:3800000
KS ci ratio: 2.164099e-02	ci left: 8.467880e-03	ci right 8.653396e-03	k: 32529	n:3800000
INPP5D   3800000 perm   6290 sec   (604 perm/sec)   p_kst 8.560263e-03   p_cons 3.744737e-04   p_joint 1.797368e-04

Joint ci ratio: 1.496528e-01	ci left: 1.665776e-04	ci right 1.937716e-04	k: 685	n:3810000
Cons ci ratio: 1.037875e-01	ci left: 3.548497e-04	ci right 3.939477e-04	k: 1425	n:3810000
KS ci ratio: 2.160943e-02	ci left: 8.470454e-03	ci right 8.655753e-03	k: 32624	n:3810000
INPP5D   3810000 perm   6320 sec   (603 perm/sec)   p_kst 8.562730e-03   p_cons 3.740157e-04   p_joint 1.797900e-04

Joint ci ratio: 1.494351e-01	ci left: 1.666455e-04	ci right 1.938075e-04	k: 687	n:3820000
Cons ci ratio: 1.036422e-01	ci left: 3.549408e-04	ci right 3.939906e-04	k: 1429	n:3820000
KS ci ratio: 2.158433e-02	ci left: 8.468068e-03	ci right 8.653097e-03	k: 32700	n:3820000
INPP5D   3820000 perm   6352 sec   (601 perm/sec)   p_kst 8.560209e-03   p_cons 3.740838e-04   p_joint 1.798429e-04

Joint ci ratio: 1.502014e-01	ci left: 1.644512e-04	ci right 1.914054e-04	k: 680	n:3830000
Cons ci ratio: 1.033894e-01	ci left: 3.557944e-04	ci right 3.948369e-04	k: 1436	n:3830000
KS ci ratio: 2.155965e-02	ci left: 8.465435e-03	ci right 8.650192e-03	k: 32775	n:3830000
INPP5D   3830000 perm   6384 sec   (600 perm/sec)   p_kst 8.557441e-03   p_cons 3.749347e-04   p_joint 1.775457e-04

Joint ci ratio: 1.509795e-01	ci left: 1.622687e-04	ci right 1.890154e-04	k: 673	n:3840000
Cons ci ratio: 1.033176e-01	ci left: 3.553752e-04	ci right 3.943430e-04	k: 1438	n:3840000
KS ci ratio: 2.153043e-02	ci left: 8.466442e-03	ci right 8.650967e-03	k: 32864	n:3840000
INPP5D   3840000 perm   6416 sec   (599 perm/sec)   p_kst 8.558333e-03   p_cons 3.744792e-04   p_joint 1.752604e-04

Joint ci ratio: 1.503118e-01	ci left: 1.633469e-04	ci right 1.901416e-04	k: 679	n:3850000
Cons ci ratio: 1.032817e-01	ci left: 3.547052e-04	ci right 3.935852e-04	k: 1439	n:3850000
KS ci ratio: 2.150363e-02	ci left: 8.465635e-03	ci right 8.649910e-03	k: 32946	n:3850000
INPP5D   3850000 perm   6448 sec   (597 perm/sec)   p_kst 8.557403e-03   p_cons 3.737662e-04   p_joint 1.763636e-04

Joint ci ratio: 1.605570e-01	ci left: 1.420074e-04	ci right 1.670427e-04	k: 595	n:3860000
Cons ci ratio: 1.032459e-01	ci left: 3.540386e-04	ci right 3.928313e-04	k: 1440	n:3860000
KS ci ratio: 2.148054e-02	ci left: 8.461998e-03	ci right 8.645994e-03	k: 33017	n:3860000
INPP5D   3860000 perm   6479 sec   (596 perm/sec)   p_kst 8.553627e-03   p_cons 3.730570e-04   p_joint 1.541451e-04

Joint ci ratio: 1.605571e-01	ci left: 1.416405e-04	ci right 1.666110e-04	k: 595	n:3870000
Cons ci ratio: 1.031029e-01	ci left: 3.541307e-04	ci right 3.928765e-04	k: 1444	n:3870000
KS ci ratio: 2.145589e-02	ci left: 8.459665e-03	ci right 8.643397e-03	k: 33093	n:3870000
INPP5D   3870000 perm   6511 sec   (594 perm/sec)   p_kst 8.551163e-03   p_cons 3.731266e-04   p_joint 1.537468e-04

Joint ci ratio: 1.601545e-01	ci left: 1.420176e-04	ci right 1.669858e-04	k: 598	n:3880000
Cons ci ratio: 1.030317e-01	ci left: 3.537202e-04	ci right 3.923927e-04	k: 1446	n:3880000
KS ci ratio: 2.142871e-02	ci left: 8.459395e-03	ci right 8.642886e-03	k: 33177	n:3880000
INPP5D   3880000 perm   6543 sec   (593 perm/sec)   p_kst 8.550773e-03   p_cons 3.726804e-04   p_joint 1.541237e-04

Joint ci ratio: 1.600210e-01	ci left: 1.418993e-04	ci right 1.668239e-04	k: 599	n:3890000
Cons ci ratio: 1.028896e-01	ci left: 3.538127e-04	ci right 3.924387e-04	k: 1450	n:3890000
KS ci ratio: 2.139937e-02	ci left: 8.460917e-03	ci right 8.644186e-03	k: 33268	n:3890000
INPP5D   3890000 perm   6575 sec   (592 perm/sec)   p_kst 8.552185e-03   p_cons 3.727506e-04   p_joint 1.539846e-04

Joint ci ratio: 1.600210e-01	ci left: 1.415354e-04	ci right 1.663961e-04	k: 599	n:3900000
Cons ci ratio: 1.028187e-01	ci left: 3.534051e-04	ci right 3.919584e-04	k: 1452	n:3900000
KS ci ratio: 2.136821e-02	ci left: 8.463961e-03	ci right 8.647026e-03	k: 33365	n:3900000
INPP5D   3900000 perm   6607 sec   (590 perm/sec)   p_kst 8.555128e-03   p_cons 3.723077e-04   p_joint 1.535897e-04

Joint ci ratio: 1.596224e-01	ci left: 1.419100e-04	ci right 1.667685e-04	k: 602	n:3910000
Cons ci ratio: 1.026423e-01	ci left: 3.537472e-04	ci right 3.922676e-04	k: 1457	n:3910000
KS ci ratio: 2.134330e-02	ci left: 8.462157e-03	ci right 8.644966e-03	k: 33443	n:3910000
INPP5D   3910000 perm   6639 sec   (589 perm/sec)   p_kst 8.553197e-03   p_cons 3.726343e-04   p_joint 1.539642e-04

Joint ci ratio: 1.589646e-01	ci left: 1.427727e-04	ci right 1.676694e-04	k: 607	n:3920000
Cons ci ratio: 1.023967e-01	ci left: 3.545847e-04	ci right 3.930984e-04	k: 1464	n:3920000
KS ci ratio: 2.131912e-02	ci left: 8.459854e-03	ci right 8.642404e-03	k: 33519	n:3920000
INPP5D   3920000 perm   6671 sec   (588 perm/sec)   p_kst 8.550765e-03   p_cons 3.734694e-04   p_joint 1.548469e-04

Joint ci ratio: 1.585739e-01	ci left: 1.431424e-04	ci right 1.680364e-04	k: 610	n:3930000
Cons ci ratio: 1.022224e-01	ci left: 3.549221e-04	ci right 3.934030e-04	k: 1469	n:3930000
KS ci ratio: 2.129054e-02	ci left: 8.461106e-03	ci right 8.643436e-03	k: 33609	n:3930000
INPP5D   3930000 perm   6704 sec   (586 perm/sec)   p_kst 8.551908e-03   p_cons 3.737913e-04   p_joint 1.552163e-04

Joint ci ratio: 1.585739e-01	ci left: 1.427791e-04	ci right 1.676099e-04	k: 610	n:3940000
Cons ci ratio: 1.022225e-01	ci left: 3.540213e-04	ci right 3.924045e-04	k: 1469	n:3940000
KS ci ratio: 2.126463e-02	ci left: 8.460333e-03	ci right 8.642421e-03	k: 33691	n:3940000
INPP5D   3940000 perm   6737 sec   (585 perm/sec)   p_kst 8.551015e-03   p_cons 3.728426e-04   p_joint 1.548223e-04

Joint ci ratio: 1.581860e-01	ci left: 1.431471e-04	ci right 1.679752e-04	k: 613	n:3950000
Cons ci ratio: 1.019799e-01	ci left: 3.548520e-04	ci right 3.932284e-04	k: 1476	n:3950000
KS ci ratio: 2.123849e-02	ci left: 8.459815e-03	ci right 8.641666e-03	k: 33774	n:3950000
INPP5D   3950000 perm   6770 sec   (583 perm/sec)   p_kst 8.550380e-03   p_cons 3.736709e-04   p_joint 1.551899e-04

Joint ci ratio: 1.581860e-01	ci left: 1.427856e-04	ci right 1.675510e-04	k: 613	n:3960000
Cons ci ratio: 1.018077e-01	ci left: 3.551863e-04	ci right 3.935302e-04	k: 1481	n:3960000
KS ci ratio: 2.120992e-02	ci left: 8.461310e-03	ci right 8.642945e-03	k: 33865	n:3960000
INPP5D   3960000 perm   6804 sec   (582 perm/sec)   p_kst 8.551768e-03   p_cons 3.739899e-04   p_joint 1.547980e-04

Joint ci ratio: 1.576732e-01	ci left: 1.433937e-04	ci right 1.681763e-04	k: 617	n:3970000
Cons ci ratio: 1.016706e-01	ci left: 3.552736e-04	ci right 3.935721e-04	k: 1485	n:3970000
KS ci ratio: 2.117926e-02	ci left: 8.464551e-03	ci right 8.645990e-03	k: 33963	n:3970000
INPP5D   3970000 perm   6837 sec   (581 perm/sec)   p_kst 8.554912e-03   p_cons 3.740554e-04   p_joint 1.554156e-04

Joint ci ratio: 1.574187e-01	ci left: 1.435161e-04	ci right 1.682760e-04	k: 619	n:3980000
Cons ci ratio: 1.016364e-01	ci left: 3.546258e-04	ci right 3.928409e-04	k: 1486	n:3980000
KS ci ratio: 2.115281e-02	ci left: 8.464527e-03	ci right 8.645736e-03	k: 34048	n:3980000
INPP5D   3980000 perm   6871 sec   (579 perm/sec)   p_kst 8.554774e-03   p_cons 3.733668e-04   p_joint 1.555276e-04

Joint ci ratio: 1.572919e-01	ci left: 1.433971e-04	ci right 1.681148e-04	k: 620	n:3990000
Cons ci ratio: 1.015682e-01	ci left: 3.542255e-04	ci right 3.923703e-04	k: 1488	n:3990000
KS ci ratio: 2.112147e-02	ci left: 8.468493e-03	ci right 8.649515e-03	k: 34149	n:3990000
INPP5D   3990000 perm   6906 sec   (578 perm/sec)   p_kst 8.558647e-03   p_cons 3.729323e-04   p_joint 1.553885e-04

Joint ci ratio: 1.571654e-01	ci left: 1.432788e-04	ci right 1.679543e-04	k: 621	n:4000000
Cons ci ratio: 1.013641e-01	ci left: 3.548019e-04	ci right 3.929275e-04	k: 1494	n:4000000
KS ci ratio: 2.109927e-02	ci left: 8.465226e-03	ci right 8.645986e-03	k: 34221	n:4000000
INPP5D   4000000 perm   6938 sec   (577 perm/sec)   p_kst 8.555250e-03   p_cons 3.735000e-04   p_joint 1.552500e-04

Joint ci ratio: 1.569134e-01	ci left: 1.434007e-04	ci right 1.680538e-04	k: 623	n:4010000
Cons ci ratio: 1.012288e-01	ci left: 3.548893e-04	ci right 3.929704e-04	k: 1498	n:4010000
KS ci ratio: 2.107095e-02	ci left: 8.466938e-03	ci right 8.647489e-03	k: 34313	n:4010000
INPP5D   4010000 perm   6971 sec   (575 perm/sec)   p_kst 8.556858e-03   p_cons 3.735661e-04   p_joint 1.553616e-04

Joint ci ratio: 1.565375e-01	ci left: 1.437609e-04	ci right 1.684113e-04	k: 626	n:4020000
Cons ci ratio: 1.011951e-01	ci left: 3.542490e-04	ci right 3.922479e-04	k: 1499	n:4020000
KS ci ratio: 2.104305e-02	ci left: 8.468394e-03	ci right 8.648733e-03	k: 34404	n:4020000
INPP5D   4020000 perm   7003 sec   (574 perm/sec)   p_kst 8.558209e-03   p_cons 3.728856e-04   p_joint 1.557214e-04

Joint ci ratio: 1.561643e-01	ci left: 1.441195e-04	ci right 1.687669e-04	k: 629	n:4030000
Cons ci ratio: 1.010940e-01	ci left: 3.540955e-04	ci right 3.920378e-04	k: 1502	n:4030000
KS ci ratio: 2.101988e-02	ci left: 8.466139e-03	ci right 8.646230e-03	k: 34480	n:4030000
INPP5D   4030000 perm   7036 sec   (573 perm/sec)   p_kst 8.555831e-03   p_cons 3.727047e-04   p_joint 1.560794e-04

Joint ci ratio: 1.559170e-01	ci left: 1.442385e-04	ci right 1.688635e-04	k: 631	n:4040000
Cons ci ratio: 1.009263e-01	ci left: 3.544254e-04	ci right 3.923363e-04	k: 1507	n:4040000
KS ci ratio: 2.099923e-02	ci left: 8.461927e-03	ci right 8.641749e-03	k: 34548	n:4040000
INPP5D   4040000 perm   7070 sec   (571 perm/sec)   p_kst 8.551485e-03   p_cons 3.730198e-04   p_joint 1.561881e-04

Joint ci ratio: 1.556709e-01	ci left: 1.443569e-04	ci right 1.689596e-04	k: 633	n:4050000
Cons ci ratio: 1.008929e-01	ci left: 3.537910e-04	ci right 3.916207e-04	k: 1508	n:4050000
KS ci ratio: 2.097405e-02	ci left: 8.461419e-03	ci right 8.641013e-03	k: 34631	n:4050000
INPP5D   4050000 perm   7103 sec   (570 perm/sec)   p_kst 8.550864e-03   p_cons 3.723457e-04   p_joint 1.562963e-04

Joint ci ratio: 1.555483e-01	ci left: 1.442381e-04	ci right 1.687994e-04	k: 634	n:4060000
Cons ci ratio: 1.007927e-01	ci left: 3.536398e-04	ci right 3.914137e-04	k: 1511	n:4060000
KS ci ratio: 2.094076e-02	ci left: 8.467530e-03	ci right 8.646965e-03	k: 34741	n:4060000
INPP5D   4060000 perm   7136 sec   (569 perm/sec)   p_kst 8.556897e-03   p_cons 3.721675e-04   p_joint 1.561576e-04

Joint ci ratio: 1.555483e-01	ci left: 1.438837e-04	ci right 1.683846e-04	k: 634	n:4070000
Cons ci ratio: 1.006265e-01	ci left: 3.539685e-04	ci right 3.917114e-04	k: 1516	n:4070000
KS ci ratio: 2.091459e-02	ci left: 8.467990e-03	ci right 8.647207e-03	k: 34828	n:4070000
INPP5D   4070000 perm   7169 sec   (568 perm/sec)   p_kst 8.557248e-03   p_cons 3.724816e-04   p_joint 1.557740e-04

Joint ci ratio: 1.554260e-01	ci left: 1.437666e-04	ci right 1.682265e-04	k: 635	n:4080000
Cons ci ratio: 1.005934e-01	ci left: 3.533399e-04	ci right 3.910026e-04	k: 1517	n:4080000
KS ci ratio: 2.088760e-02	ci left: 8.469178e-03	ci right 8.648187e-03	k: 34918	n:4080000
INPP5D   4080000 perm   7202 sec   (567 perm/sec)   p_kst 8.558333e-03   p_cons 3.718137e-04   p_joint 1.556373e-04

Joint ci ratio: 1.553039e-01	ci left: 1.436501e-04	ci right 1.680692e-04	k: 636	n:4090000
Cons ci ratio: 1.004281e-01	ci left: 3.536677e-04	ci right 3.912998e-04	k: 1522	n:4090000
KS ci ratio: 2.086163e-02	ci left: 8.469632e-03	ci right 8.648424e-03	k: 35005	n:4090000
INPP5D   4090000 perm   7236 sec   (565 perm/sec)   p_kst 8.558680e-03   p_cons 3.721271e-04   p_joint 1.555012e-04

Joint ci ratio: 1.551822e-01	ci left: 1.435341e-04	ci right 1.679127e-04	k: 637	n:4100000
Cons ci ratio: 1.002636e-01	ci left: 3.539940e-04	ci right 3.915955e-04	k: 1527	n:4100000
KS ci ratio: 2.083515e-02	ci left: 8.470568e-03	ci right 8.649151e-03	k: 35094	n:4100000
INPP5D   4100000 perm   7270 sec   (564 perm/sec)   p_kst 8.559512e-03   p_cons 3.724390e-04   p_joint 1.553659e-04

Joint ci ratio: 1.549395e-01	ci left: 1.436527e-04	ci right 1.680096e-04	k: 639	n:4110000
Cons ci ratio: 1.001000e-01	ci left: 3.543188e-04	ci right 3.918897e-04	k: 1532	n:4110000
KS ci ratio: 2.080013e-02	ci left: 8.478520e-03	ci right 8.656966e-03	k: 35212	n:4110000
INPP5D   4110000 perm   7303 sec   (563 perm/sec)   p_kst 8.567397e-03   p_cons 3.727494e-04   p_joint 1.554745e-04

Joint ci ratio: 1.545776e-01	ci left: 1.440039e-04	ci right 1.683582e-04	k: 642	n:4120000
Cons ci ratio: 9.990462e-02	ci left: 3.548787e-04	ci right 3.924313e-04	k: 1538	n:4120000
KS ci ratio: 2.077626e-02	ci left: 8.477499e-03	ci right 8.655717e-03	k: 35293	n:4120000
INPP5D   4120000 perm   7338 sec   (561 perm/sec)   p_kst 8.566262e-03   p_cons 3.733010e-04   p_joint 1.558252e-04

Joint ci ratio: 1.543378e-01	ci left: 1.441208e-04	ci right 1.684535e-04	k: 644	n:4130000
Cons ci ratio: 9.964592e-02	ci left: 3.559081e-04	ci right 3.934664e-04	k: 1546	n:4130000
KS ci ratio: 2.074951e-02	ci left: 8.478892e-03	ci right 8.656907e-03	k: 35384	n:4130000
INPP5D   4130000 perm   7374 sec   (560 perm/sec)   p_kst 8.567554e-03   p_cons 3.743341e-04   p_joint 1.559322e-04

Joint ci ratio: 1.540990e-01	ci left: 1.442371e-04	ci right 1.685483e-04	k: 646	n:4140000
Cons ci ratio: 9.951734e-02	ci left: 3.559906e-04	ci right 3.935063e-04	k: 1550	n:4140000
KS ci ratio: 2.072317e-02	ci left: 8.480038e-03	ci right 8.657848e-03	k: 35474	n:4140000
INPP5D   4140000 perm   7408 sec   (559 perm/sec)   p_kst 8.568599e-03   p_cons 3.743961e-04   p_joint 1.560386e-04

Joint ci ratio: 1.538614e-01	ci left: 1.443529e-04	ci right 1.686426e-04	k: 648	n:4150000
Cons ci ratio: 9.948530e-02	ci left: 3.553677e-04	ci right 3.928050e-04	k: 1551	n:4150000
KS ci ratio: 2.069868e-02	ci left: 8.479741e-03	ci right 8.657332e-03	k: 35558	n:4150000
INPP5D   4150000 perm   7442 sec   (558 perm/sec)   p_kst 8.568193e-03   p_cons 3.737349e-04   p_joint 1.561446e-04

Joint ci ratio: 1.421803e-01	ci left: 1.697021e-04	ci right 1.959057e-04	k: 759	n:4160000
Cons ci ratio: 9.942129e-02	ci left: 3.549823e-04	ci right 3.923535e-04	k: 1553	n:4160000
KS ci ratio: 2.067516e-02	ci left: 8.478727e-03	ci right 8.656093e-03	k: 35639	n:4160000
INPP5D   4160000 perm   7476 sec   (556 perm/sec)   p_kst 8.567067e-03   p_cons 3.733173e-04   p_joint 1.824519e-04

Joint ci ratio: 1.420869e-01	ci left: 1.695264e-04	ci right 1.956843e-04	k: 760	n:4170000
Cons ci ratio: 9.929357e-02	ci left: 3.550664e-04	ci right 3.923957e-04	k: 1557	n:4170000
KS ci ratio: 2.064705e-02	ci left: 8.481536e-03	ci right 8.658716e-03	k: 35736	n:4170000
INPP5D   4170000 perm   7510 sec   (555 perm/sec)   p_kst 8.569784e-03   p_cons 3.733813e-04   p_joint 1.822542e-04

Joint ci ratio: 1.419006e-01	ci left: 1.695823e-04	ci right 1.957116e-04	k: 762	n:4180000
Cons ci ratio: 9.910290e-02	ci left: 3.556168e-04	ci right 3.929279e-04	k: 1563	n:4180000
KS ci ratio: 2.062428e-02	ci left: 8.480047e-03	ci right 8.656999e-03	k: 35815	n:4180000
INPP5D   4180000 perm   7543 sec   (554 perm/sec)   p_kst 8.568182e-03   p_cons 3.739234e-04   p_joint 1.822967e-04

Joint ci ratio: 1.419006e-01	ci left: 1.691776e-04	ci right 1.952445e-04	k: 762	n:4190000
Cons ci ratio: 9.903962e-02	ci left: 3.552335e-04	ci right 3.924793e-04	k: 1565	n:4190000
KS ci ratio: 2.060564e-02	ci left: 8.475241e-03	ci right 8.651931e-03	k: 35880	n:4190000
INPP5D   4190000 perm   7577 sec   (553 perm/sec)   p_kst 8.563246e-03   p_cons 3.735084e-04   p_joint 1.818616e-04

Joint ci ratio: 1.415301e-01	ci left: 1.696934e-04	ci right 1.957657e-04	k: 766	n:4200000
Cons ci ratio: 9.897646e-02	ci left: 3.548521e-04	ci right 3.920328e-04	k: 1567	n:4200000
KS ci ratio: 2.057984e-02	ci left: 8.476380e-03	ci right 8.652870e-03	k: 35970	n:4200000
INPP5D   4200000 perm   7612 sec   (552 perm/sec)   p_kst 8.564286e-03   p_cons 3.730952e-04   p_joint 1.823810e-04

Joint ci ratio: 1.415301e-01	ci left: 1.692903e-04	ci right 1.953007e-04	k: 766	n:4210000
Cons ci ratio: 9.885045e-02	ci left: 3.549359e-04	ci right 3.920752e-04	k: 1571	n:4210000
KS ci ratio: 2.055902e-02	ci left: 8.473497e-03	ci right 8.649746e-03	k: 36043	n:4210000
INPP5D   4210000 perm   7646 sec   (551 perm/sec)   p_kst 8.561283e-03   p_cons 3.731591e-04   p_joint 1.819477e-04

Joint ci ratio: 1.506457e-01	ci left: 1.483408e-04	ci right 1.727328e-04	k: 676	n:4220000
Cons ci ratio: 9.878765e-02	ci left: 3.545570e-04	ci right 3.916318e-04	k: 1573	n:4220000
KS ci ratio: 2.052823e-02	ci left: 8.478878e-03	ci right 8.654972e-03	k: 36151	n:4220000
INPP5D   4220000 perm   7680 sec   (549 perm/sec)   p_kst 8.566588e-03   p_cons 3.727488e-04   p_joint 1.601896e-04

Joint ci ratio: 1.499825e-01	ci left: 1.493552e-04	ci right 1.737962e-04	k: 682	n:4230000
Cons ci ratio: 9.866236e-02	ci left: 3.546411e-04	ci right 3.916749e-04	k: 1577	n:4230000
KS ci ratio: 2.049930e-02	ci left: 8.482824e-03	ci right 8.658748e-03	k: 36253	n:4230000
INPP5D   4230000 perm   7714 sec   (548 perm/sec)   p_kst 8.570449e-03   p_cons 3.728132e-04   p_joint 1.612293e-04

Joint ci ratio: 1.508688e-01	ci left: 1.471872e-04	ci right 1.714286e-04	k: 674	n:4240000
Cons ci ratio: 9.863114e-02	ci left: 3.540347e-04	ci right 3.909928e-04	k: 1578	n:4240000
KS ci ratio: 2.047474e-02	ci left: 8.483231e-03	ci right 8.658951e-03	k: 36340	n:4240000
INPP5D   4240000 perm   7748 sec   (547 perm/sec)   p_kst 8.570755e-03   p_cons 3.721698e-04   p_joint 1.589623e-04

Joint ci ratio: 1.505347e-01	ci left: 1.475201e-04	ci right 1.717577e-04	k: 677	n:4250000
Cons ci ratio: 9.856876e-02	ci left: 3.536607e-04	ci right 3.905550e-04	k: 1580	n:4250000
KS ci ratio: 2.044886e-02	ci left: 8.484807e-03	ci right 8.660334e-03	k: 36432	n:4250000
INPP5D   4250000 perm   7783 sec   (546 perm/sec)   p_kst 8.572235e-03   p_cons 3.717647e-04   p_joint 1.592941e-04

Joint ci ratio: 1.502027e-01	ci left: 1.478516e-04	ci right 1.720852e-04	k: 680	n:4260000
Cons ci ratio: 9.847538e-02	ci left: 3.535174e-04	ci right 3.903598e-04	k: 1583	n:4260000
KS ci ratio: 2.042448e-02	ci left: 8.485208e-03	ci right 8.660532e-03	k: 36519	n:4260000
INPP5D   4260000 perm   7818 sec   (545 perm/sec)   p_kst 8.572535e-03   p_cons 3.715962e-04   p_joint 1.596244e-04

Joint ci ratio: 1.502027e-01	ci left: 1.475053e-04	ci right 1.716822e-04	k: 680	n:4270000
Cons ci ratio: 9.832031e-02	ci left: 3.538316e-04	ci right 3.906454e-04	k: 1588	n:4270000
KS ci ratio: 2.040132e-02	ci left: 8.484675e-03	ci right 8.659787e-03	k: 36602	n:4270000
INPP5D   4270000 perm   7852 sec   (544 perm/sec)   p_kst 8.571897e-03   p_cons 3.718970e-04   p_joint 1.592506e-04

Joint ci ratio: 1.497635e-01	ci left: 1.480602e-04	ci right 1.722507e-04	k: 684	n:4280000
Cons ci ratio: 9.807369e-02	ci left: 3.548281e-04	ci right 3.916477e-04	k: 1596	n:4280000
KS ci ratio: 2.037879e-02	ci left: 8.483679e-03	ci right 8.658575e-03	k: 36683	n:4280000
INPP5D   4280000 perm   7888 sec   (543 perm/sec)   p_kst 8.570794e-03   p_cons 3.728972e-04   p_joint 1.598131e-04

Joint ci ratio: 1.495453e-01	ci left: 1.481638e-04	ci right 1.723328e-04	k: 686	n:4290000
Cons ci ratio: 9.801236e-02	ci left: 3.544558e-04	ci right 3.912124e-04	k: 1598	n:4290000
KS ci ratio: 2.035690e-02	ci left: 8.482225e-03	ci right 8.656901e-03	k: 36762	n:4290000
INPP5D   4290000 perm   7923 sec   (541 perm/sec)   p_kst 8.569231e-03   p_cons 3.724942e-04   p_joint 1.599068e-04

Joint ci ratio: 1.494366e-01	ci left: 1.480431e-04	ci right 1.721733e-04	k: 687	n:4300000
Cons ci ratio: 9.798175e-02	ci left: 3.538583e-04	ci right 3.905409e-04	k: 1599	n:4300000
KS ci ratio: 2.033675e-02	ci left: 8.479389e-03	ci right 8.653832e-03	k: 36835	n:4300000
INPP5D   4300000 perm   7960 sec   (540 perm/sec)   p_kst 8.566279e-03   p_cons 3.718605e-04   p_joint 1.597674e-04

Joint ci ratio: 1.493282e-01	ci left: 1.479229e-04	ci right 1.720145e-04	k: 688	n:4310000
Cons ci ratio: 9.789003e-02	ci left: 3.537163e-04	ci right 3.903478e-04	k: 1602	n:4310000
KS ci ratio: 2.031666e-02	ci left: 8.476566e-03	ci right 8.650777e-03	k: 36908	n:4310000
INPP5D   4310000 perm   7995 sec   (539 perm/sec)   p_kst 8.563341e-03   p_cons 3.716937e-04   p_joint 1.596288e-04

Joint ci ratio: 1.492199e-01	ci left: 1.478034e-04	ci right 1.718565e-04	k: 689	n:4320000
Cons ci ratio: 9.779857e-02	ci left: 3.535750e-04	ci right 3.901557e-04	k: 1605	n:4320000
KS ci ratio: 2.029718e-02	ci left: 8.473296e-03	ci right 8.647271e-03	k: 36979	n:4320000
INPP5D   4320000 perm   8031 sec   (538 perm/sec)   p_kst 8.559954e-03   p_cons 3.715278e-04   p_joint 1.594907e-04

Joint ci ratio: 1.488966e-01	ci left: 1.481290e-04	ci right 1.721782e-04	k: 692	n:4330000
Cons ci ratio: 9.767700e-02	ci left: 3.536596e-04	ci right 3.902010e-04	k: 1609	n:4330000
KS ci ratio: 2.027583e-02	ci left: 8.471650e-03	ci right 8.645405e-03	k: 37057	n:4330000
INPP5D   4330000 perm   8066 sec   (537 perm/sec)   p_kst 8.558199e-03   p_cons 3.715935e-04   p_joint 1.598152e-04

Joint ci ratio: 1.486822e-01	ci left: 1.482314e-04	ci right 1.722595e-04	k: 694	n:4340000
Cons ci ratio: 9.758613e-02	ci left: 3.535191e-04	ci right 3.900100e-04	k: 1612	n:4340000
KS ci ratio: 2.025344e-02	ci left: 8.470928e-03	ci right 8.644475e-03	k: 37139	n:4340000
INPP5D   4340000 perm   8101 sec   (536 perm/sec)   p_kst 8.557373e-03   p_cons 3.714286e-04   p_joint 1.599078e-04

Joint ci ratio: 1.486822e-01	ci left: 1.478906e-04	ci right 1.718635e-04	k: 694	n:4350000
Cons ci ratio: 9.752571e-02	ci left: 3.531550e-04	ci right 3.895844e-04	k: 1614	n:4350000
KS ci ratio: 2.022839e-02	ci left: 8.472497e-03	ci right 8.645859e-03	k: 37231	n:4350000
INPP5D   4350000 perm   8138 sec   (535 perm/sec)   p_kst 8.558851e-03   p_cons 3.710345e-04   p_joint 1.595402e-04

Joint ci ratio: 1.485753e-01	ci left: 1.477722e-04	ci right 1.717072e-04	k: 695	n:4360000
Cons ci ratio: 9.734503e-02	ci left: 3.536876e-04	ci right 3.901006e-04	k: 1620	n:4360000
KS ci ratio: 2.020588e-02	ci left: 8.472006e-03	ci right 8.645162e-03	k: 37314	n:4360000
INPP5D   4360000 perm   8172 sec   (534 perm/sec)   p_kst 8.558257e-03   p_cons 3.715596e-04   p_joint 1.594037e-04

Joint ci ratio: 1.483623e-01	ci left: 1.478748e-04	ci right 1.717889e-04	k: 697	n:4370000
Cons ci ratio: 9.725508e-02	ci left: 3.535480e-04	ci right 3.899111e-04	k: 1623	n:4370000
KS ci ratio: 2.017992e-02	ci left: 8.474476e-03	ci right 8.647458e-03	k: 37410	n:4370000
INPP5D   4370000 perm   8209 sec   (532 perm/sec)   p_kst 8.560641e-03   p_cons 3.713959e-04   p_joint 1.594966e-04

Joint ci ratio: 1.481502e-01	ci left: 1.479768e-04	ci right 1.718703e-04	k: 699	n:4380000
Cons ci ratio: 9.707589e-02	ci left: 3.540774e-04	ci right 3.904240e-04	k: 1629	n:4380000
KS ci ratio: 2.015568e-02	ci left: 8.475572e-03	ci right 8.648366e-03	k: 37500	n:4380000
INPP5D   4380000 perm   8245 sec   (531 perm/sec)   p_kst 8.561644e-03   p_cons 3.719178e-04   p_joint 1.595890e-04

Joint ci ratio: 1.480445e-01	ci left: 1.478591e-04	ci right 1.717150e-04	k: 700	n:4390000
Cons ci ratio: 9.692733e-02	ci left: 3.543822e-04	ci right 3.907012e-04	k: 1634	n:4390000
KS ci ratio: 2.013261e-02	ci left: 8.475757e-03	ci right 8.648355e-03	k: 37586	n:4390000
INPP5D   4390000 perm   8281 sec   (530 perm/sec)   p_kst 8.561731e-03   p_cons 3.722096e-04   p_joint 1.594533e-04

Joint ci ratio: 1.479390e-01	ci left: 1.477419e-04	ci right 1.715604e-04	k: 701	n:4400000
Cons ci ratio: 9.683854e-02	ci left: 3.542421e-04	ci right 3.905116e-04	k: 1637	n:4400000
KS ci ratio: 2.011204e-02	ci left: 8.473906e-03	ci right 8.646287e-03	k: 37663	n:4400000
INPP5D   4400000 perm   8316 sec   (529 perm/sec)   p_kst 8.559773e-03   p_cons 3.720455e-04   p_joint 1.593182e-04

Joint ci ratio: 1.477287e-01	ci left: 1.478436e-04	ci right 1.716416e-04	k: 703	n:4410000
Cons ci ratio: 9.657353e-02	ci left: 3.554303e-04	ci right 3.917162e-04	k: 1646	n:4410000
KS ci ratio: 2.009045e-02	ci left: 8.472966e-03	ci right 8.645141e-03	k: 37744	n:4410000
INPP5D   4410000 perm   8353 sec   (528 perm/sec)   p_kst 8.558730e-03   p_cons 3.732426e-04   p_joint 1.594104e-04

Joint ci ratio: 1.476239e-01	ci left: 1.477270e-04	ci right 1.714879e-04	k: 704	n:4420000
Cons ci ratio: 9.651497e-02	ci left: 3.550677e-04	ci right 3.912934e-04	k: 1648	n:4420000
KS ci ratio: 2.006975e-02	ci left: 8.471354e-03	ci right 8.643318e-03	k: 37822	n:4420000
INPP5D   4420000 perm   8390 sec   (527 perm/sec)   p_kst 8.557014e-03   p_cons 3.728507e-04   p_joint 1.592760e-04

Joint ci ratio: 1.472069e-01	ci left: 1.482632e-04	ci right 1.720370e-04	k: 708	n:4430000
Cons ci ratio: 9.642730e-02	ci left: 3.549271e-04	ci right 3.911037e-04	k: 1651	n:4430000
KS ci ratio: 2.004750e-02	ci left: 8.471098e-03	ci right 8.642863e-03	k: 37906	n:4430000
INPP5D   4430000 perm   8426 sec   (526 perm/sec)   p_kst 8.556659e-03   p_cons 3.726862e-04   p_joint 1.598194e-04

Joint ci ratio: 1.469997e-01	ci left: 1.483631e-04	ci right 1.721166e-04	k: 710	n:4440000
Cons ci ratio: 9.633987e-02	ci left: 3.547871e-04	ci right 3.909148e-04	k: 1654	n:4440000
KS ci ratio: 2.002745e-02	ci left: 8.469050e-03	ci right 8.640600e-03	k: 37982	n:4440000
INPP5D   4440000 perm   8462 sec   (525 perm/sec)   p_kst 8.554505e-03   p_cons 3.725225e-04   p_joint 1.599099e-04

Joint ci ratio: 1.463833e-01	ci left: 1.493286e-04	ci right 1.731276e-04	k: 716	n:4450000
Cons ci ratio: 9.622366e-02	ci left: 3.548670e-04	ci right 3.909568e-04	k: 1658	n:4450000
KS ci ratio: 2.000296e-02	ci left: 8.470813e-03	ci right 8.642187e-03	k: 38075	n:4450000
INPP5D   4450000 perm   8498 sec   (524 perm/sec)   p_kst 8.556180e-03   p_cons 3.725843e-04   p_joint 1.608989e-04

Joint ci ratio: 1.458755e-01	ci left: 1.500739e-04	ci right 1.739014e-04	k: 721	n:4460000
Cons ci ratio: 9.602126e-02	ci left: 3.556031e-04	ci right 3.916875e-04	k: 1665	n:4460000
KS ci ratio: 1.998041e-02	ci left: 8.471007e-03	ci right 8.642188e-03	k: 38161	n:4460000
INPP5D   4460000 perm   8534 sec   (523 perm/sec)   p_kst 8.556278e-03   p_cons 3.733184e-04   p_joint 1.616592e-04

Joint ci ratio: 1.455733e-01	ci left: 1.503848e-04	ci right 1.742080e-04	k: 724	n:4470000
Cons ci ratio: 9.590619e-02	ci left: 3.556810e-04	ci right 3.917275e-04	k: 1669	n:4470000
KS ci ratio: 1.995662e-02	ci left: 8.472312e-03	ci right 8.643314e-03	k: 38252	n:4470000
INPP5D   4470000 perm   8570 sec   (522 perm/sec)   p_kst 8.557494e-03   p_cons 3.733781e-04   p_joint 1.619687e-04

Joint ci ratio: 1.454730e-01	ci left: 1.502642e-04	ci right 1.740504e-04	k: 725	n:4480000
Cons ci ratio: 9.576293e-02	ci left: 3.559764e-04	ci right 3.919959e-04	k: 1674	n:4480000
KS ci ratio: 1.993344e-02	ci left: 8.473168e-03	ci right 8.643986e-03	k: 38341	n:4480000
INPP5D   4480000 perm   8606 sec   (521 perm/sec)   p_kst 8.558259e-03   p_cons 3.736607e-04   p_joint 1.618304e-04

Joint ci ratio: 1.454731e-01	ci left: 1.499295e-04	ci right 1.736628e-04	k: 725	n:4490000
Cons ci ratio: 9.562030e-02	ci left: 3.562705e-04	ci right 3.922631e-04	k: 1679	n:4490000
KS ci ratio: 1.991007e-02	ci left: 8.474241e-03	ci right 8.644879e-03	k: 38431	n:4490000
INPP5D   4490000 perm   8644 sec   (519 perm/sec)   p_kst 8.559243e-03   p_cons 3.739421e-04   p_joint 1.614699e-04

Joint ci ratio: 1.453730e-01	ci left: 1.498105e-04	ci right 1.735072e-04	k: 726	n:4500000
Cons ci ratio: 9.553505e-02	ci left: 3.561295e-04	ci right 3.920740e-04	k: 1682	n:4500000
KS ci ratio: 1.988601e-02	ci left: 8.475974e-03	ci right 8.646437e-03	k: 38524	n:4500000
INPP5D   4500000 perm   8680 sec   (518 perm/sec)   p_kst 8.560889e-03   p_cons 3.737778e-04   p_joint 1.613333e-04

Joint ci ratio: 1.452731e-01	ci left: 1.496920e-04	ci right 1.733523e-04	k: 727	n:4510000
Cons ci ratio: 9.542172e-02	ci left: 3.562056e-04	ci right 3.921128e-04	k: 1686	n:4510000
KS ci ratio: 1.986204e-02	ci left: 8.477698e-03	ci right 8.647989e-03	k: 38617	n:4510000
INPP5D   4510000 perm   8716 sec   (517 perm/sec)   p_kst 8.562528e-03   p_cons 3.738359e-04   p_joint 1.611973e-04

Joint ci ratio: 1.451735e-01	ci left: 1.495740e-04	ci right 1.731980e-04	k: 728	n:4520000
Cons ci ratio: 9.536522e-02	ci left: 3.558495e-04	ci right 3.916983e-04	k: 1688	n:4520000
KS ci ratio: 1.984047e-02	ci left: 8.477434e-03	ci right 8.647533e-03	k: 38701	n:4520000
INPP5D   4520000 perm   8751 sec   (516 perm/sec)   p_kst 8.562168e-03   p_cons 3.734513e-04   p_joint 1.610619e-04

Joint ci ratio: 1.451735e-01	ci left: 1.492438e-04	ci right 1.728157e-04	k: 728	n:4530000
Cons ci ratio: 9.511210e-02	ci left: 3.570034e-04	ci right 3.928677e-04	k: 1697	n:4530000
KS ci ratio: 1.981872e-02	ci left: 8.477391e-03	ci right 8.647300e-03	k: 38786	n:4530000
INPP5D   4530000 perm   8787 sec   (516 perm/sec)   p_kst 8.562031e-03   p_cons 3.746137e-04   p_joint 1.607064e-04

Joint ci ratio: 1.448757e-01	ci left: 1.495519e-04	ci right 1.731198e-04	k: 731	n:4540000
Cons ci ratio: 9.488879e-02	ci left: 3.579373e-04	ci right 3.938063e-04	k: 1705	n:4540000
KS ci ratio: 1.979807e-02	ci left: 8.476471e-03	ci right 8.646183e-03	k: 38867	n:4540000
INPP5D   4540000 perm   8823 sec   (515 perm/sec)   p_kst 8.561013e-03   p_cons 3.755507e-04   p_joint 1.610132e-04

Joint ci ratio: 1.448757e-01	ci left: 1.492232e-04	ci right 1.727393e-04	k: 731	n:4550000
Cons ci ratio: 9.477774e-02	ci left: 3.580089e-04	ci right 3.938407e-04	k: 1709	n:4550000
KS ci ratio: 1.977339e-02	ci left: 8.479055e-03	ci right 8.648604e-03	k: 38964	n:4550000
INPP5D   4550000 perm   8860 sec   (514 perm/sec)   p_kst 8.563516e-03   p_cons 3.756044e-04   p_joint 1.606593e-04

Joint ci ratio: 1.447769e-01	ci left: 1.491073e-04	ci right 1.725877e-04	k: 732	n:4560000
Cons ci ratio: 9.466708e-02	ci left: 3.580802e-04	ci right 3.938750e-04	k: 1713	n:4560000
KS ci ratio: 1.975135e-02	ci left: 8.479445e-03	ci right 8.648811e-03	k: 39051	n:4560000
INPP5D   4560000 perm   8896 sec   (513 perm/sec)   p_kst 8.563816e-03   p_cons 3.756579e-04   p_joint 1.605263e-04

Joint ci ratio: 1.447769e-01	ci left: 1.487811e-04	ci right 1.722101e-04	k: 732	n:4570000
Cons ci ratio: 9.461191e-02	ci left: 3.577239e-04	ci right 3.934611e-04	k: 1715	n:4570000
KS ci ratio: 1.973243e-02	ci left: 8.477221e-03	ci right 8.646378e-03	k: 39126	n:4570000
INPP5D   4570000 perm   8933 sec   (512 perm/sec)   p_kst 8.561488e-03   p_cons 3.752735e-04   p_joint 1.601751e-04

Joint ci ratio: 1.445798e-01	ci left: 1.488771e-04	ci right 1.722865e-04	k: 734	n:4580000
Cons ci ratio: 9.452933e-02	ci left: 3.575824e-04	ci right 3.932726e-04	k: 1718	n:4580000
KS ci ratio: 1.971332e-02	ci left: 8.475224e-03	ci right 8.644176e-03	k: 39202	n:4580000
INPP5D   4580000 perm   8969 sec   (511 perm/sec)   p_kst 8.559389e-03   p_cons 3.751092e-04   p_joint 1.602620e-04

Joint ci ratio: 1.443834e-01	ci left: 1.489727e-04	ci right 1.723627e-04	k: 736	n:4590000
Cons ci ratio: 9.439214e-02	ci left: 3.578669e-04	ci right 3.935308e-04	k: 1723	n:4590000
KS ci ratio: 1.968996e-02	ci left: 8.476921e-03	ci right 8.645704e-03	k: 39295	n:4590000
INPP5D   4590000 perm   9006 sec   (510 perm/sec)   p_kst 8.561002e-03   p_cons 3.753813e-04   p_joint 1.603486e-04

Joint ci ratio: 1.442856e-01	ci left: 1.488584e-04	ci right 1.722132e-04	k: 737	n:4600000
Cons ci ratio: 9.428282e-02	ci left: 3.579380e-04	ci right 3.935654e-04	k: 1727	n:4600000
KS ci ratio: 1.966492e-02	ci left: 8.480125e-03	ci right 8.648755e-03	k: 39395	n:4600000
INPP5D   4600000 perm   9043 sec   (509 perm/sec)   p_kst 8.564130e-03   p_cons 3.754348e-04   p_joint 1.602174e-04

Joint ci ratio: 1.440905e-01	ci left: 1.489537e-04	ci right 1.722891e-04	k: 739	n:4610000
Cons ci ratio: 9.420109e-02	ci left: 3.577970e-04	ci right 3.933777e-04	k: 1730	n:4610000
KS ci ratio: 1.964299e-02	ci left: 8.480725e-03	ci right 8.649177e-03	k: 39483	n:4610000
INPP5D   4610000 perm   9080 sec   (508 perm/sec)   p_kst 8.564642e-03   p_cons 3.752711e-04   p_joint 1.603037e-04

Joint ci ratio: 1.440905e-01	ci left: 1.486313e-04	ci right 1.719162e-04	k: 739	n:4620000
Cons ci ratio: 9.409244e-02	ci left: 3.578680e-04	ci right 3.934125e-04	k: 1734	n:4620000
KS ci ratio: 1.962088e-02	ci left: 8.481538e-03	ci right 8.649814e-03	k: 39572	n:4620000
INPP5D   4620000 perm   9117 sec   (507 perm/sec)   p_kst 8.565368e-03   p_cons 3.753247e-04   p_joint 1.599567e-04

Joint ci ratio: 1.437993e-01	ci left: 1.489349e-04	ci right 1.722161e-04	k: 742	n:4630000
Cons ci ratio: 9.395714e-02	ci left: 3.581496e-04	ci right 3.936681e-04	k: 1739	n:4630000
KS ci ratio: 1.959312e-02	ci left: 8.487291e-03	ci right 8.655441e-03	k: 39684	n:4630000
INPP5D   4630000 perm   9154 sec   (506 perm/sec)   p_kst 8.571058e-03   p_cons 3.755940e-04   p_joint 1.602592e-04

Joint ci ratio: 1.433178e-01	ci left: 1.496528e-04	ci right 1.729612e-04	k: 747	n:4640000
Cons ci ratio: 9.393018e-02	ci left: 3.575881e-04	ci right 3.930402e-04	k: 1740	n:4640000
KS ci ratio: 1.957118e-02	ci left: 8.488087e-03	ci right 8.656062e-03	k: 39773	n:4640000
INPP5D   4640000 perm   9192 sec   (505 perm/sec)   p_kst 8.571767e-03   p_cons 3.750000e-04   p_joint 1.609914e-04

Joint ci ratio: 1.432221e-01	ci left: 1.495383e-04	ci right 1.728120e-04	k: 748	n:4650000
Cons ci ratio: 9.384936e-02	ci left: 3.574491e-04	ci right 3.928553e-04	k: 1743	n:4650000
KS ci ratio: 1.955030e-02	ci left: 8.488023e-03	ci right 8.655815e-03	k: 39858	n:4650000
INPP5D   4650000 perm   9229 sec   (504 perm/sec)   p_kst 8.571613e-03   p_cons 3.748387e-04   p_joint 1.608602e-04

Joint ci ratio: 1.430313e-01	ci left: 1.496312e-04	ci right 1.728857e-04	k: 750	n:4660000
Cons ci ratio: 9.376875e-02	ci left: 3.573107e-04	ci right 3.926711e-04	k: 1746	n:4660000
KS ci ratio: 1.953122e-02	ci left: 8.486465e-03	ci right 8.654061e-03	k: 39936	n:4660000
INPP5D   4660000 perm   9266 sec   (503 perm/sec)   p_kst 8.569957e-03   p_cons 3.746781e-04   p_joint 1.609442e-04

Joint ci ratio: 1.429362e-01	ci left: 1.495173e-04	ci right 1.727373e-04	k: 751	n:4670000
Cons ci ratio: 9.371514e-02	ci left: 3.569639e-04	ci right 3.922686e-04	k: 1748	n:4670000
KS ci ratio: 1.950997e-02	ci left: 8.486831e-03	ci right 8.654250e-03	k: 40023	n:4670000
INPP5D   4670000 perm   9304 sec   (502 perm/sec)   p_kst 8.570236e-03   p_cons 3.743041e-04   p_joint 1.608137e-04

Joint ci ratio: 1.427465e-01	ci left: 1.496099e-04	ci right 1.728108e-04	k: 753	n:4680000
Cons ci ratio: 9.363488e-02	ci left: 3.568271e-04	ci right 3.920864e-04	k: 1751	n:4680000
KS ci ratio: 1.948880e-02	ci left: 8.487196e-03	ci right 8.654438e-03	k: 40110	n:4680000
INPP5D   4680000 perm   9341 sec   (501 perm/sec)   p_kst 8.570513e-03   p_cons 3.741453e-04   p_joint 1.608974e-04

Joint ci ratio: 1.426519e-01	ci left: 1.494965e-04	ci right 1.726632e-04	k: 754	n:4690000
Cons ci ratio: 9.350154e-02	ci left: 3.571074e-04	ci right 3.923415e-04	k: 1756	n:4690000
KS ci ratio: 1.946965e-02	ci left: 8.485862e-03	ci right 8.652912e-03	k: 40189	n:4690000
INPP5D   4690000 perm   9379 sec   (500 perm/sec)   p_kst 8.569083e-03   p_cons 3.744136e-04   p_joint 1.607676e-04

Joint ci ratio: 1.424633e-01	ci left: 1.495887e-04	ci right 1.727365e-04	k: 756	n:4700000
Cons ci ratio: 9.328936e-02	ci left: 3.580100e-04	ci right 3.932486e-04	k: 1764	n:4700000
KS ci ratio: 1.944958e-02	ci left: 8.485381e-03	ci right 8.652247e-03	k: 40272	n:4700000
INPP5D   4700000 perm   9417 sec   (499 perm/sec)   p_kst 8.568511e-03   p_cons 3.753191e-04   p_joint 1.608511e-04

Joint ci ratio: 1.421819e-01	ci left: 1.498854e-04	ci right 1.730294e-04	k: 759	n:4710000
Cons ci ratio: 9.318382e-02	ci left: 3.580794e-04	ci right 3.932827e-04	k: 1768	n:4710000
KS ci ratio: 1.942521e-02	ci left: 8.488705e-03	ci right 8.655425e-03	k: 40373	n:4710000
INPP5D   4710000 perm   9454 sec   (498 perm/sec)   p_kst 8.571762e-03   p_cons 3.753715e-04   p_joint 1.611465e-04

Joint ci ratio: 1.420884e-01	ci left: 1.497722e-04	ci right 1.728822e-04	k: 760	n:4720000
Cons ci ratio: 9.313121e-02	ci left: 3.577346e-04	ci right 3.928831e-04	k: 1770	n:4720000
KS ci ratio: 1.940649e-02	ci left: 8.487165e-03	ci right 8.653693e-03	k: 40451	n:4720000
INPP5D   4720000 perm   9492 sec   (497 perm/sec)   p_kst 8.570127e-03   p_cons 3.750000e-04   p_joint 1.610169e-04

Joint ci ratio: 1.419021e-01	ci left: 1.498634e-04	ci right 1.729545e-04	k: 762	n:4730000
Cons ci ratio: 9.307869e-02	ci left: 3.573913e-04	ci right 3.924851e-04	k: 1772	n:4730000
KS ci ratio: 1.938782e-02	ci left: 8.485632e-03	ci right 8.651968e-03	k: 40529	n:4730000
INPP5D   4730000 perm   9530 sec   (496 perm/sec)   p_kst 8.568499e-03   p_cons 3.746300e-04   p_joint 1.610994e-04

Joint ci ratio: 1.418092e-01	ci left: 1.497507e-04	ci right 1.728081e-04	k: 763	n:4740000
Cons ci ratio: 9.300005e-02	ci left: 3.572555e-04	ci right 3.923047e-04	k: 1775	n:4740000
KS ci ratio: 1.936344e-02	ci left: 8.489145e-03	ci right 8.655338e-03	k: 40631	n:4740000
INPP5D   4740000 perm   9568 sec   (495 perm/sec)   p_kst 8.571941e-03   p_cons 3.744726e-04   p_joint 1.609705e-04

Joint ci ratio: 1.453736e-01	ci left: 1.419257e-04	ci right 1.643753e-04	k: 726	n:4750000
Cons ci ratio: 9.286940e-02	ci left: 3.575315e-04	ci right 3.925559e-04	k: 1780	n:4750000
KS ci ratio: 1.934825e-02	ci left: 8.484681e-03	ci right 8.650655e-03	k: 40695	n:4750000
INPP5D   4750000 perm   9606 sec   (494 perm/sec)   p_kst 8.567368e-03   p_cons 3.747368e-04   p_joint 1.528421e-04

Joint ci ratio: 1.453736e-01	ci left: 1.416275e-04	ci right 1.640300e-04	k: 726	n:4760000
Cons ci ratio: 9.281731e-02	ci left: 3.571908e-04	ci right 3.921611e-04	k: 1782	n:4760000
KS ci ratio: 1.932712e-02	ci left: 8.485464e-03	ci right 8.651269e-03	k: 40784	n:4760000
INPP5D   4760000 perm   9645 sec   (494 perm/sec)   p_kst 8.568067e-03   p_cons 3.743697e-04   p_joint 1.525210e-04

Joint ci ratio: 1.451741e-01	ci left: 1.417347e-04	ci right 1.641206e-04	k: 728	n:4770000
Cons ci ratio: 9.266151e-02	ci left: 3.576707e-04	ci right 3.926260e-04	k: 1788	n:4770000
KS ci ratio: 1.930654e-02	ci left: 8.485825e-03	ci right 8.651460e-03	k: 40871	n:4770000
INPP5D   4770000 perm   9683 sec   (493 perm/sec)   p_kst 8.568344e-03   p_cons 3.748428e-04   p_joint 1.526205e-04

Joint ci ratio: 1.450746e-01	ci left: 1.416398e-04	ci right 1.639940e-04	k: 729	n:4780000
Cons ci ratio: 9.260978e-02	ci left: 3.573311e-04	ci right 3.922327e-04	k: 1790	n:4780000
KS ci ratio: 1.928531e-02	ci left: 8.486810e-03	ci right 8.652280e-03	k: 40961	n:4780000
INPP5D   4780000 perm   9721 sec   (492 perm/sec)   p_kst 8.569247e-03   p_cons 3.744770e-04   p_joint 1.525105e-04

Joint ci ratio: 1.450746e-01	ci left: 1.413441e-04	ci right 1.636517e-04	k: 729	n:4790000
Cons ci ratio: 9.250653e-02	ci left: 3.574009e-04	ci right 3.922683e-04	k: 1794	n:4790000
KS ci ratio: 1.926486e-02	ci left: 8.487168e-03	ci right 8.652467e-03	k: 41048	n:4790000
INPP5D   4790000 perm   9760 sec   (491 perm/sec)   p_kst 8.569520e-03   p_cons 3.745303e-04   p_joint 1.521921e-04

Joint ci ratio: 1.449754e-01	ci left: 1.412504e-04	ci right 1.635266e-04	k: 730	n:4800000
Cons ci ratio: 9.248080e-02	ci left: 3.568598e-04	ci right 3.916642e-04	k: 1795	n:4800000
KS ci ratio: 1.924447e-02	ci left: 8.487524e-03	ci right 8.652653e-03	k: 41135	n:4800000
INPP5D   4800000 perm   9798 sec   (490 perm/sec)   p_kst 8.569792e-03   p_cons 3.739583e-04   p_joint 1.520833e-04

Joint ci ratio: 1.446788e-01	ci left: 1.415578e-04	ci right 1.638329e-04	k: 733	n:4810000
Cons ci ratio: 9.245509e-02	ci left: 3.563210e-04	ci right 3.910626e-04	k: 1796	n:4810000
KS ci ratio: 1.923027e-02	ci left: 8.482499e-03	ci right 8.647407e-03	k: 41196	n:4810000
INPP5D   4810000 perm   9836 sec   (489 perm/sec)   p_kst 8.564657e-03   p_cons 3.733888e-04   p_joint 1.523909e-04

Joint ci ratio: 1.445803e-01	ci left: 1.414641e-04	ci right 1.637080e-04	k: 734	n:4820000
Cons ci ratio: 9.237802e-02	ci left: 3.561897e-04	ci right 3.908881e-04	k: 1799	n:4820000
KS ci ratio: 1.920601e-02	ci left: 8.486374e-03	ci right 8.651147e-03	k: 41300	n:4820000
INPP5D   4820000 perm   9875 sec   (488 perm/sec)   p_kst 8.568465e-03   p_cons 3.732365e-04   p_joint 1.522822e-04

Joint ci ratio: 1.443840e-01	ci left: 1.415703e-04	ci right 1.637981e-04	k: 736	n:4830000
Cons ci ratio: 9.232676e-02	ci left: 3.558568e-04	ci right 3.905025e-04	k: 1801	n:4830000
KS ci ratio: 1.918183e-02	ci left: 8.490233e-03	ci right 8.654871e-03	k: 41404	n:4830000
INPP5D   4830000 perm   9914 sec   (487 perm/sec)   p_kst 8.572257e-03   p_cons 3.728778e-04   p_joint 1.523810e-04

Joint ci ratio: 1.441885e-01	ci left: 1.416761e-04	ci right 1.638878e-04	k: 738	n:4840000
Cons ci ratio: 9.227558e-02	ci left: 3.555252e-04	ci right 3.901184e-04	k: 1803	n:4840000
KS ci ratio: 1.916381e-02	ci left: 8.488729e-03	ci right 8.653182e-03	k: 41482	n:4840000
INPP5D   4840000 perm   9952 sec   (486 perm/sec)   p_kst 8.570661e-03   p_cons 3.725207e-04   p_joint 1.524793e-04

Joint ci ratio: 1.440911e-01	ci left: 1.415827e-04	ci right 1.637635e-04	k: 739	n:4850000
Cons ci ratio: 9.212249e-02	ci left: 3.560008e-04	ci right 3.905796e-04	k: 1809	n:4850000
KS ci ratio: 1.914583e-02	ci left: 8.487232e-03	ci right 8.651500e-03	k: 41560	n:4850000
INPP5D   4850000 perm   9991 sec   (485 perm/sec)   p_kst 8.569072e-03   p_cons 3.729897e-04   p_joint 1.523711e-04

Joint ci ratio: 1.438967e-01	ci left: 1.416881e-04	ci right 1.638529e-04	k: 741	n:4860000
Cons ci ratio: 9.199550e-02	ci left: 3.562734e-04	ci right 3.908285e-04	k: 1814	n:4860000
KS ci ratio: 1.912466e-02	ci left: 8.488608e-03	ci right 8.652719e-03	k: 41652	n:4860000
INPP5D   4860000 perm   10030 sec   (485 perm/sec)   p_kst 8.570370e-03   p_cons 3.732510e-04   p_joint 1.524691e-04

Joint ci ratio: 1.437999e-01	ci left: 1.415951e-04	ci right 1.637292e-04	k: 742	n:4870000
Cons ci ratio: 9.186904e-02	ci left: 3.565449e-04	ci right 3.910762e-04	k: 1819	n:4870000
KS ci ratio: 1.910103e-02	ci left: 8.492227e-03	ci right 8.656202e-03	k: 41755	n:4870000
INPP5D   4870000 perm   10069 sec   (484 perm/sec)   p_kst 8.573922e-03   p_cons 3.735113e-04   p_joint 1.523614e-04

Joint ci ratio: 1.437032e-01	ci left: 1.415025e-04	ci right 1.636059e-04	k: 743	n:4880000
Cons ci ratio: 9.169284e-02	ci left: 3.572158e-04	ci right 3.917422e-04	k: 1826	n:4880000
KS ci ratio: 1.908139e-02	ci left: 8.492363e-03	ci right 8.656171e-03	k: 41841	n:4880000
INPP5D   4880000 perm   10109 sec   (483 perm/sec)   p_kst 8.573975e-03   p_cons 3.741803e-04   p_joint 1.522541e-04

Joint ci ratio: 1.435104e-01	ci left: 1.416074e-04	ci right 1.636950e-04	k: 745	n:4890000
Cons ci ratio: 9.154263e-02	ci left: 3.576842e-04	ci right 3.921962e-04	k: 1832	n:4890000
KS ci ratio: 1.906181e-02	ci left: 8.492500e-03	ci right 8.656140e-03	k: 41927	n:4890000
INPP5D   4890000 perm   10148 sec   (482 perm/sec)   p_kst 8.574029e-03   p_cons 3.746421e-04   p_joint 1.523517e-04

Joint ci ratio: 1.433184e-01	ci left: 1.417120e-04	ci right 1.637838e-04	k: 747	n:4900000
Cons ci ratio: 9.144291e-02	ci left: 3.577519e-04	ci right 3.922308e-04	k: 1836	n:4900000
KS ci ratio: 1.903909e-02	ci left: 8.495479e-03	ci right 8.658980e-03	k: 42027	n:4900000
INPP5D   4900000 perm   10188 sec   (481 perm/sec)   p_kst 8.576939e-03   p_cons 3.746939e-04   p_joint 1.524490e-04

Joint ci ratio: 1.433185e-01	ci left: 1.414233e-04	ci right 1.634502e-04	k: 747	n:4910000
Cons ci ratio: 9.134351e-02	ci left: 3.578193e-04	ci right 3.922652e-04	k: 1840	n:4910000
KS ci ratio: 1.901850e-02	ci left: 8.496622e-03	ci right 8.659966e-03	k: 42118	n:4910000
INPP5D   4910000 perm   10227 sec   (480 perm/sec)   p_kst 8.578004e-03   p_cons 3.747454e-04   p_joint 1.521385e-04

Joint ci ratio: 1.432228e-01	ci left: 1.413319e-04	ci right 1.633285e-04	k: 748	n:4920000
Cons ci ratio: 9.129395e-02	ci left: 3.574892e-04	ci right 3.918837e-04	k: 1842	n:4920000
KS ci ratio: 1.899957e-02	ci left: 8.496345e-03	ci right 8.659519e-03	k: 42202	n:4920000
INPP5D   4920000 perm   10266 sec   (479 perm/sec)   p_kst 8.577642e-03   p_cons 3.743902e-04   p_joint 1.520325e-04

Joint ci ratio: 1.428418e-01	ci left: 1.418275e-04	ci right 1.638376e-04	k: 752	n:4930000
Cons ci ratio: 9.114568e-02	ci left: 3.579534e-04	ci right 3.923336e-04	k: 1848	n:4930000
KS ci ratio: 1.898273e-02	ci left: 8.494251e-03	ci right 8.657239e-03	k: 42277	n:4930000
INPP5D   4930000 perm   10306 sec   (478 perm/sec)   p_kst 8.575456e-03   p_cons 3.748479e-04   p_joint 1.525355e-04

Joint ci ratio: 1.427471e-01	ci left: 1.417356e-04	ci right 1.637156e-04	k: 753	n:4940000
Cons ci ratio: 9.114572e-02	ci left: 3.572288e-04	ci right 3.915394e-04	k: 1848	n:4940000
KS ci ratio: 1.896458e-02	ci left: 8.493376e-03	ci right 8.656189e-03	k: 42358	n:4940000
INPP5D   4940000 perm   10346 sec   (478 perm/sec)   p_kst 8.574494e-03   p_cons 3.740891e-04   p_joint 1.524291e-04

Joint ci ratio: 1.427471e-01	ci left: 1.414493e-04	ci right 1.633849e-04	k: 753	n:4950000
Cons ci ratio: 9.107187e-02	ci left: 3.570994e-04	ci right 3.913683e-04	k: 1851	n:4950000
KS ci ratio: 1.894423e-02	ci left: 8.494514e-03	ci right 8.657173e-03	k: 42449	n:4950000
INPP5D   4950000 perm   10386 sec   (477 perm/sec)   p_kst 8.575556e-03   p_cons 3.739394e-04   p_joint 1.521212e-04

Joint ci ratio: 1.426525e-01	ci left: 1.413585e-04	ci right 1.632643e-04	k: 754	n:4960000
Cons ci ratio: 9.090022e-02	ci left: 3.577586e-04	ci right 3.920226e-04	k: 1858	n:4960000
KS ci ratio: 1.892125e-02	ci left: 8.498056e-03	ci right 8.660583e-03	k: 42552	n:4960000
INPP5D   4960000 perm   10425 sec   (476 perm/sec)   p_kst 8.579032e-03   p_cons 3.745968e-04   p_joint 1.520161e-04

Joint ci ratio: 1.426526e-01	ci left: 1.410741e-04	ci right 1.629358e-04	k: 754	n:4970000
Cons ci ratio: 9.082697e-02	ci left: 3.576286e-04	ci right 3.918512e-04	k: 1861	n:4970000
KS ci ratio: 1.890172e-02	ci left: 8.498580e-03	ci right 8.660947e-03	k: 42640	n:4970000
INPP5D   4970000 perm   10466 sec   (475 perm/sec)   p_kst 8.579477e-03   p_cons 3.744467e-04   p_joint 1.517103e-04

Joint ci ratio: 1.425582e-01	ci left: 1.409844e-04	ci right 1.628165e-04	k: 755	n:4980000
Cons ci ratio: 9.077824e-02	ci left: 3.573030e-04	ci right 3.914751e-04	k: 1863	n:4980000
KS ci ratio: 1.888112e-02	ci left: 8.500101e-03	ci right 8.662319e-03	k: 42733	n:4980000
INPP5D   4980000 perm   10507 sec   (474 perm/sec)   p_kst 8.580924e-03   p_cons 3.740964e-04   p_joint 1.516064e-04

Joint ci ratio: 1.425582e-01	ci left: 1.407019e-04	ci right 1.624903e-04	k: 755	n:4990000
Cons ci ratio: 9.070529e-02	ci left: 3.571745e-04	ci right 3.913054e-04	k: 1866	n:4990000
KS ci ratio: 1.886171e-02	ci left: 8.500619e-03	ci right 8.662678e-03	k: 42821	n:4990000
INPP5D   4990000 perm   10547 sec   (473 perm/sec)   p_kst 8.581363e-03   p_cons 3.739479e-04   p_joint 1.513026e-04

Joint ci ratio: 1.423700e-01	ci left: 1.408062e-04	ci right 1.625795e-04	k: 757	n:5000000
Cons ci ratio: 9.060827e-02	ci left: 3.572420e-04	ci right 3.913409e-04	k: 1870	n:5000000
KS ci ratio: 1.883992e-02	ci left: 8.503324e-03	ci right 8.665246e-03	k: 42920	n:5000000
INPP5D   5000000 perm   10587 sec   (472 perm/sec)   p_kst 8.584000e-03   p_cons 3.740000e-04   p_joint 1.514000e-04

Outputting figure to mutsig2_images.part000000000085/INPP5D.4_3186_5000000_0.008584_0.000374_0.0001514.png
                gene_name: INPP5D
               theta_stop: 0.14 
                    nperm: 5000000 
                     p_ks: 0.0086 
        ci_ks_bounds_left: 0.0085 
       ci_ks_bounds_right: 0.0087 
                   p_cons: 0.00037 
      ci_cons_bounds_left: 0.00036 
     ci_cons_bounds_right: 0.00039 
                  p_joint: 0.00015 
     ci_joint_bounds_left: 0.00014 
    ci_joint_bounds_right: 0.00016 

Current progress: 35 percent done.
INPPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.181638e-02	ci left: 3.544610e-01	ci right 3.734183e-01	k: 3639	n:10000
Cons ci ratio: 2.575879e-02	ci left: 6.892979e-01	ci right 7.073865e-01	k: 6984	n:10000
KS ci ratio: 8.293560e-02	ci left: 1.749728e-01	ci right 1.902126e-01	k: 1825	n:10000
INPPL1   10000 perm   2 sec   (4843 perm/sec)   p_kst 1.825000e-01   p_cons 6.984000e-01   p_joint 3.639000e-01

Outputting figure to mutsig2_images.part000000000085/INPPL1.4_3889_10000_0.1825_0.6984_0.3639.png
                gene_name: INPPL1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 37 percent done.
IL28RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.079455e-02	ci left: 7.721552e-01	ci right 7.884812e-01	k: 7804	n:10000
Cons ci ratio: 3.201653e-02	ci left: 5.901194e-01	ci right 6.094224e-01	k: 5998	n:10000
KS ci ratio: 1.397384e-02	ci left: 8.809390e-01	ci right 8.934345e-01	k: 8873	n:10000
IL28RA   10000 perm   2 sec   (5974 perm/sec)   p_kst 8.873000e-01   p_cons 5.998000e-01   p_joint 7.804000e-01

Outputting figure to mutsig2_images.part000000000085/IL28RA.3_1591_10000_0.8873_0.5998_0.7804.png
                gene_name: IL28RA
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 39 percent done.
IL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.803670e-01	ci left: 4.101996e-02	ci right 4.924766e-02	k: 450	n:10000
Cons ci ratio: 3.134257e-01	ci left: 1.298624e-02	ci right 1.790194e-02	k: 153	n:10000
KS ci ratio: 1.320333e-01	ci left: 7.562816e-02	ci right 8.641740e-02	k: 809	n:10000
IL3   10000 perm   2 sec   (6639 perm/sec)   p_kst 8.090000e-02   p_cons 1.530000e-02   p_joint 4.500000e-02

Joint ci ratio: 1.233734e-01	ci left: 4.507829e-02	ci right 5.105398e-02	k: 960	n:20000
Cons ci ratio: 2.194697e-01	ci left: 1.397554e-02	ci right 1.746732e-02	k: 313	n:20000
KS ci ratio: 9.552987e-02	ci left: 7.392873e-02	ci right 8.139460e-02	k: 1552	n:20000
IL3   20000 perm   3 sec   (6066 perm/sec)   p_kst 7.760000e-02   p_cons 1.565000e-02   p_joint 4.800000e-02

Joint ci ratio: 1.169449e-01	ci left: 3.398512e-02	ci right 3.823866e-02	k: 1082	n:30000
Cons ci ratio: 1.809622e-01	ci left: 1.400516e-02	ci right 1.682316e-02	k: 461	n:30000
KS ci ratio: 7.843007e-02	ci left: 7.384403e-02	ci right 7.990488e-02	k: 2305	n:30000
IL3   30000 perm   5 sec   (5796 perm/sec)   p_kst 7.683333e-02   p_cons 1.536667e-02   p_joint 3.606667e-02

Joint ci ratio: 1.024989e-01	ci left: 3.346411e-02	ci right 3.710376e-02	k: 1410	n:40000
Cons ci ratio: 1.571075e-01	ci left: 1.411992e-02	ci right 1.655118e-02	k: 612	n:40000
KS ci ratio: 6.788282e-02	ci left: 7.433190e-02	ci right 7.957971e-02	k: 3077	n:40000
IL3   40000 perm   7 sec   (5620 perm/sec)   p_kst 7.692500e-02   p_cons 1.530000e-02   p_joint 3.525000e-02

Joint ci ratio: 1.206380e-01	ci left: 1.943109e-02	ci right 2.194499e-02	k: 1033	n:50000
Cons ci ratio: 1.371304e-01	ci left: 1.497632e-02	ci right 1.720038e-02	k: 803	n:50000
KS ci ratio: 6.096995e-02	ci left: 7.402711e-02	ci right 7.870221e-02	k: 3817	n:50000
IL3   50000 perm   9 sec   (5479 perm/sec)   p_kst 7.634000e-02   p_cons 1.606000e-02   p_joint 2.066000e-02

Joint ci ratio: 1.187636e-01	ci left: 1.677323e-02	ci right 1.890711e-02	k: 1069	n:60000
Cons ci ratio: 1.247757e-01	ci left: 1.517267e-02	ci right 1.720785e-02	k: 970	n:60000
KS ci ratio: 5.556984e-02	ci left: 7.445122e-02	ci right 7.872317e-02	k: 4594	n:60000
IL3   60000 perm   11 sec   (5347 perm/sec)   p_kst 7.656667e-02   p_cons 1.616667e-02   p_joint 1.781667e-02

Joint ci ratio: 1.094786e-01	ci left: 1.700017e-02	ci right 1.898293e-02	k: 1258	n:70000
Cons ci ratio: 1.159805e-01	ci left: 1.512508e-02	ci right 1.700106e-02	k: 1123	n:70000
KS ci ratio: 5.121445e-02	ci left: 7.524728e-02	ci right 7.921642e-02	k: 5405	n:70000
IL3   70000 perm   13 sec   (5212 perm/sec)   p_kst 7.721429e-02   p_cons 1.604286e-02   p_joint 1.797143e-02

Joint ci ratio: 8.367703e-02	ci left: 2.558162e-02	ci right 2.782788e-02	k: 2135	n:80000
Cons ci ratio: 1.092518e-01	ci left: 1.497155e-02	ci right 1.671382e-02	k: 1266	n:80000
KS ci ratio: 4.772405e-02	ci left: 7.591588e-02	ci right 7.963981e-02	k: 6221	n:80000
IL3   80000 perm   16 sec   (5096 perm/sec)   p_kst 7.776250e-02   p_cons 1.582500e-02   p_joint 2.668750e-02

Joint ci ratio: 9.835194e-02	ci left: 1.649071e-02	ci right 1.820727e-02	k: 1560	n:90000
Cons ci ratio: 1.037223e-01	ci left: 1.481130e-02	ci right 1.644236e-02	k: 1405	n:90000
KS ci ratio: 4.497292e-02	ci left: 7.609110e-02	ci right 7.960284e-02	k: 7005	n:90000
IL3   90000 perm   18 sec   (4914 perm/sec)   p_kst 7.783333e-02   p_cons 1.561111e-02   p_joint 1.733333e-02

Joint ci ratio: 9.359208e-02	ci left: 1.643250e-02	ci right 1.805567e-02	k: 1723	n:100000
Cons ci ratio: 9.783564e-02	ci left: 1.502642e-02	ci right 1.658185e-02	k: 1579	n:100000
KS ci ratio: 4.261892e-02	ci left: 7.633524e-02	ci right 7.966929e-02	k: 7799	n:100000
IL3   100000 perm   21 sec   (4824 perm/sec)   p_kst 7.799000e-02   p_cons 1.579000e-02   p_joint 1.723000e-02

Outputting figure to mutsig2_images.part000000000085/IL3.3_479_100000_0.07799_0.01579_0.01723.png
                gene_name: IL3
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.018 

Current progress: 40 percent done.
IL32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.978118e-02	ci left: 6.244707e-01	ci right 6.434512e-01	k: 6340	n:10000
KS ci ratio: 2.308428e-02	ci left: 7.338101e-01	ci right 7.510485e-01	k: 7425	n:10000
IL32   10000 perm   2 sec   (6572 perm/sec)   p_kst 7.425000e-01   p_cons 6.340000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IL32.3_591_10000_0.7425_0.634_1.png
                gene_name: IL32
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
IL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.605580e-03	ci left: 9.498142e-01	ci right 9.581188e-01	k: 9541	n:10000
Cons ci ratio: 5.484792e-02	ci left: 3.287271e-01	ci right 3.473673e-01	k: 3380	n:10000
KS ci ratio: 3.799000e-02	ci left: 5.057516e-01	ci right 5.254393e-01	k: 5156	n:10000
IL4   10000 perm   1 sec   (7128 perm/sec)   p_kst 5.156000e-01   p_cons 3.380000e-01   p_joint 9.541000e-01

Outputting figure to mutsig2_images.part000000000085/IL4.3_478_10000_0.5156_0.338_0.9541.png
                gene_name: IL4
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 44 percent done.
IL6R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.114155e-02	ci left: 1.489391e-01	ci right 1.632618e-01	k: 1560	n:10000
Cons ci ratio: 8.119962e-02	ci left: 1.812696e-01	ci right 1.967120e-01	k: 1889	n:10000
KS ci ratio: 9.434992e-02	ci left: 1.402112e-01	ci right 1.541950e-01	k: 1471	n:10000
IL6R   10000 perm   2 sec   (6184 perm/sec)   p_kst 1.471000e-01   p_cons 1.889000e-01   p_joint 1.560000e-01

Outputting figure to mutsig2_images.part000000000085/IL6R.3_1447_10000_0.1471_0.1889_0.156.png
                gene_name: IL6R
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 46 percent done.
IL6ST
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.996985e-02	ci left: 4.803561e-01	ci right 5.000496e-01	k: 4902	n:10000
Cons ci ratio: 1.873320e-02	ci left: 8.063342e-01	ci right 8.216825e-01	k: 8141	n:10000
KS ci ratio: 5.655754e-02	ci left: 3.152266e-01	ci right 3.336757e-01	k: 3244	n:10000
IL6ST   10000 perm   2 sec   (5219 perm/sec)   p_kst 3.244000e-01   p_cons 8.141000e-01   p_joint 4.902000e-01

Outputting figure to mutsig2_images.part000000000085/IL6ST.3_2817_10000_0.3244_0.8141_0.4902.png
                gene_name: IL6ST
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 47 percent done.
IL7R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.059483e-02	ci left: 6.118092e-01	ci right 6.309201e-01	k: 6214	n:10000
KS ci ratio: 1.994303e-02	ci left: 7.863438e-01	ci right 8.022844e-01	k: 7944	n:10000
IL7R   10000 perm   2 sec   (6532 perm/sec)   p_kst 7.944000e-01   p_cons 6.214000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IL7R.3_1412_10000_0.7944_0.6214_1.png
                gene_name: IL7R
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
IMP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.483114e-02	ci left: 4.234587e-01	ci right 4.429803e-01	k: 4332	n:10000
Cons ci ratio: 6.233328e-02	ci left: 2.744825e-01	ci right 2.922438e-01	k: 2833	n:10000
KS ci ratio: 3.351152e-02	ci left: 5.679478e-01	ci right 5.874070e-01	k: 5777	n:10000
IMP4   10000 perm   2 sec   (6635 perm/sec)   p_kst 5.777000e-01   p_cons 2.833000e-01   p_joint 4.332000e-01

Outputting figure to mutsig2_images.part000000000085/IMP4.3_912_10000_0.5777_0.2833_0.4332.png
                gene_name: IMP4
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 51 percent done.
IMP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.589924e-01	ci left: 5.272798e-02	ci right 6.193202e-02	k: 572	n:10000
Cons ci ratio: 6.312521e-02	ci left: 2.694328e-01	ci right 2.870966e-01	k: 2782	n:10000
KS ci ratio: 2.083034e-01	ci left: 3.062918e-02	ci right 3.784546e-02	k: 341	n:10000
IMP5   10000 perm   2 sec   (5798 perm/sec)   p_kst 3.410000e-02   p_cons 2.782000e-01   p_joint 5.720000e-02

Joint ci ratio: 9.962254e-02	ci left: 6.825964e-02	ci right 7.546543e-02	k: 1436	n:20000
Cons ci ratio: 4.411996e-02	ci left: 2.767144e-01	ci right 2.892488e-01	k: 5659	n:20000
KS ci ratio: 1.455428e-01	ci left: 3.244754e-02	ci right 3.758880e-02	k: 699	n:20000
IMP5   20000 perm   4 sec   (5165 perm/sec)   p_kst 3.495000e-02   p_cons 2.829500e-01   p_joint 7.180000e-02

Joint ci ratio: 8.287453e-02	ci left: 6.651671e-02	ci right 7.230035e-02	k: 2081	n:30000
Cons ci ratio: 3.583542e-02	ci left: 2.799957e-01	ci right 2.902460e-01	k: 8553	n:30000
KS ci ratio: 1.165546e-01	ci left: 3.421187e-02	ci right 3.847853e-02	k: 1089	n:30000
IMP5   30000 perm   6 sec   (4931 perm/sec)   p_kst 3.630000e-02   p_cons 2.851000e-01   p_joint 6.936667e-02

Joint ci ratio: 7.850450e-02	ci left: 5.636695e-02	ci right 6.099737e-02	k: 2346	n:40000
Cons ci ratio: 3.091179e-02	ci left: 2.822963e-01	ci right 2.911847e-01	k: 11469	n:40000
KS ci ratio: 1.007002e-01	ci left: 3.465905e-02	ci right 3.835863e-02	k: 1459	n:40000
IMP5   40000 perm   8 sec   (4784 perm/sec)   p_kst 3.647500e-02   p_cons 2.867250e-01   p_joint 5.865000e-02

Joint ci ratio: 6.766513e-02	ci left: 6.076769e-02	ci right 6.504323e-02	k: 3144	n:50000
Cons ci ratio: 2.760988e-02	ci left: 2.833362e-01	ci right 2.912886e-01	k: 14365	n:50000
KS ci ratio: 8.976339e-02	ci left: 3.508844e-02	ci right 3.840563e-02	k: 1836	n:50000
IMP5   50000 perm   11 sec   (4650 perm/sec)   p_kst 3.672000e-02   p_cons 2.873000e-01   p_joint 6.288000e-02

Outputting figure to mutsig2_images.part000000000085/IMP5.3_2059_50000_0.03672_0.2873_0.06288.png
                gene_name: IMP5
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.065 

Current progress: 53 percent done.
IMPACT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.662397e-02	ci left: 8.404046e-01	ci right 8.545923e-01	k: 8476	n:10000
KS ci ratio: 1.103812e-02	ci left: 9.213133e-01	ci right 9.316366e-01	k: 9266	n:10000
IMPACT   10000 perm   2 sec   (6307 perm/sec)   p_kst 9.266000e-01   p_cons 8.476000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IMPACT.3_1007_10000_0.9266_0.8476_1.png
                gene_name: IMPACT
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
INF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.977892e-02	ci left: 2.916223e-01	ci right 3.096939e-01	k: 3006	n:10000
Cons ci ratio: 1.944755e-02	ci left: 7.945595e-01	ci right 8.102639e-01	k: 8025	n:10000
KS ci ratio: 8.931779e-02	ci left: 1.542387e-01	ci right 1.687591e-01	k: 1614	n:10000
INF2   10000 perm   2 sec   (5382 perm/sec)   p_kst 1.614000e-01   p_cons 8.025000e-01   p_joint 3.006000e-01

Outputting figure to mutsig2_images.part000000000085/INF2.3_3871_10000_0.1614_0.8025_0.3006.png
                gene_name: INF2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 56 percent done.
INHBC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.740679e-02	ci left: 3.087773e-01	ci right 3.271288e-01	k: 3179	n:10000
Cons ci ratio: 1.232929e-01	ci left: 8.611301e-02	ci right 9.752607e-02	k: 917	n:10000
KS ci ratio: 4.367280e-02	ci left: 4.363242e-01	ci right 4.559072e-01	k: 4461	n:10000
INHBC   10000 perm   2 sec   (6274 perm/sec)   p_kst 4.461000e-01   p_cons 9.170000e-02   p_joint 3.179000e-01

Joint ci ratio: 4.817016e-02	ci left: 2.427212e-01	ci right 2.547520e-01	k: 4974	n:20000
Cons ci ratio: 8.532785e-02	ci left: 9.136270e-02	ci right 9.955535e-02	k: 1908	n:20000
KS ci ratio: 2.990924e-02	ci left: 4.550715e-01	ci right 4.689396e-01	k: 9240	n:20000
INHBC   20000 perm   4 sec   (5572 perm/sec)   p_kst 4.620000e-01   p_cons 9.540000e-02   p_joint 2.487000e-01

Outputting figure to mutsig2_images.part000000000085/INHBC.3_1067_20000_0.462_0.0954_0.2487.png
                gene_name: INHBC
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.100 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 58 percent done.
INPP4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.078901e-02	ci left: 2.846853e-01	ci right 3.026351e-01	k: 2936	n:10000
Cons ci ratio: 9.198086e-02	ci left: 1.465847e-01	ci right 1.608177e-01	k: 1536	n:10000
KS ci ratio: 5.375114e-02	ci left: 3.377653e-01	ci right 3.565238e-01	k: 3471	n:10000
INPP4A   10000 perm   2 sec   (5272 perm/sec)   p_kst 3.471000e-01   p_cons 1.536000e-01   p_joint 2.936000e-01

Outputting figure to mutsig2_images.part000000000085/INPP4A.3_3215_10000_0.3471_0.1536_0.2936.png
                gene_name: INPP4A
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 60 percent done.
INSC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.944755e-02	ci left: 7.945595e-01	ci right 8.102639e-01	k: 8025	n:10000
Cons ci ratio: 4.164532e-02	ci left: 4.598782e-01	ci right 4.795394e-01	k: 4697	n:10000
KS ci ratio: 3.204988e-02	ci left: 5.896176e-01	ci right 6.089245e-01	k: 5993	n:10000
INSC   10000 perm   2 sec   (5900 perm/sec)   p_kst 5.993000e-01   p_cons 4.697000e-01   p_joint 8.025000e-01

Outputting figure to mutsig2_images.part000000000085/INSC.3_1792_10000_0.5993_0.4697_0.8025.png
                gene_name: INSC
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 61 percent done.
IL2RA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.305088e-02	ci left: 4.434080e-01	ci right 4.630192e-01	k: 4532	n:10000
Cons ci ratio: 9.651276e-02	ci left: 1.347239e-01	ci right 1.484856e-01	k: 1415	n:10000
KS ci ratio: 2.679039e-02	ci left: 6.723675e-01	ci right 6.907266e-01	k: 6816	n:10000
IL2RA   10000 perm   1 sec   (6898 perm/sec)   p_kst 6.816000e-01   p_cons 1.415000e-01   p_joint 4.532000e-01

Outputting figure to mutsig2_images.part000000000085/IL2RA.2_851_10000_0.6816_0.1415_0.4532.png
                gene_name: IL2RA
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 63 percent done.
IL2RB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.120469e-03	ci left: 9.920588e-01	ci right 9.952433e-01	k: 9938	n:10000
Cons ci ratio: 1.707186e-02	ci left: 8.332766e-01	ci right 8.477245e-01	k: 8406	n:10000
KS ci ratio: 1.519581e-02	ci left: 8.626380e-01	ci right 8.759461e-01	k: 8694	n:10000
IL2RB   10000 perm   2 sec   (6178 perm/sec)   p_kst 8.694000e-01   p_cons 8.406000e-01   p_joint 9.938000e-01

Outputting figure to mutsig2_images.part000000000085/IL2RB.2_1692_10000_0.8694_0.8406_0.9938.png
                gene_name: IL2RB
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 65 percent done.
IL31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.068087e-01	ci left: 1.123248e-01	ci right 1.250982e-01	k: 1186	n:10000
Cons ci ratio: 9.205164e-02	ci left: 1.463885e-01	ci right 1.606140e-01	k: 1534	n:10000
KS ci ratio: 1.210554e-01	ci left: 8.912712e-02	ci right 1.007101e-01	k: 948	n:10000
IL31   10000 perm   1 sec   (6811 perm/sec)   p_kst 9.480000e-02   p_cons 1.534000e-01   p_joint 1.186000e-01

Joint ci ratio: 1.002630e-01	ci left: 6.742937e-02	ci right 7.459595e-02	k: 1419	n:20000
Cons ci ratio: 6.343949e-02	ci left: 1.551906e-01	ci right 1.654083e-01	k: 3205	n:20000
KS ci ratio: 8.532785e-02	ci left: 9.136270e-02	ci right 9.955535e-02	k: 1908	n:20000
IL31   20000 perm   3 sec   (5986 perm/sec)   p_kst 9.540000e-02   p_cons 1.602500e-01   p_joint 7.095000e-02

Joint ci ratio: 8.365433e-02	ci left: 6.533996e-02	ci right 7.107733e-02	k: 2045	n:30000
Cons ci ratio: 5.177275e-02	ci left: 1.562637e-01	ci right 1.646022e-01	k: 4812	n:30000
KS ci ratio: 7.013843e-02	ci left: 9.098291e-02	ci right 9.762923e-02	k: 2828	n:30000
IL31   30000 perm   5 sec   (5680 perm/sec)   p_kst 9.426667e-02   p_cons 1.604000e-01   p_joint 6.816667e-02

Outputting figure to mutsig2_images.part000000000085/IL31.2_507_30000_0.094267_0.1604_0.068167.png
                gene_name: IL31
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.071 

Current progress: 67 percent done.
IL33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.493607e-02	ci left: 7.029129e-01	ci right 7.207635e-01	k: 7119	n:10000
KS ci ratio: 6.132368e-03	ci left: 9.730202e-01	ci right 9.790982e-01	k: 9762	n:10000
IL33   10000 perm   1 sec   (6670 perm/sec)   p_kst 9.762000e-01   p_cons 7.119000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IL33.2_841_10000_0.9762_0.7119_1.png
                gene_name: IL33
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
IL4I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.270783e-02	ci left: 5.797835e-01	ci right 5.991643e-01	k: 5895	n:10000
KS ci ratio: 4.152849e-02	ci left: 4.612762e-01	ci right 4.809407e-01	k: 4711	n:10000
IL4I1   10000 perm   2 sec   (6154 perm/sec)   p_kst 4.711000e-01   p_cons 5.895000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IL4I1.2_1815_10000_0.4711_0.5895_1.png
                gene_name: IL4I1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
IL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.352362e-03	ci left: 9.623645e-01	ci right 9.695607e-01	k: 9661	n:10000
Cons ci ratio: 8.615380e-03	ci left: 9.497099e-01	ci right 9.580231e-01	k: 9540	n:10000
KS ci ratio: 1.024491e-01	ci left: 1.211198e-01	ci right 1.342979e-01	k: 1276	n:10000
IL6   10000 perm   1 sec   (6980 perm/sec)   p_kst 1.276000e-01   p_cons 9.540000e-01   p_joint 9.661000e-01

Joint ci ratio: 5.207474e-03	ci left: 9.633429e-01	ci right 9.684205e-01	k: 19319	n:20000
Cons ci ratio: 5.864098e-03	ci left: 9.543026e-01	ci right 9.599635e-01	k: 19144	n:20000
KS ci ratio: 7.320138e-02	ci left: 1.207908e-01	ci right 1.300185e-01	k: 2507	n:20000
IL6   20000 perm   3 sec   (6142 perm/sec)   p_kst 1.253500e-01   p_cons 9.572000e-01   p_joint 9.659500e-01

Outputting figure to mutsig2_images.part000000000085/IL6.2_659_20000_0.12535_0.9572_0.96595.png
                gene_name: IL6
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 72 percent done.
IL7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.210996e-02	ci left: 5.887143e-01	ci right 6.080283e-01	k: 5984	n:10000
KS ci ratio: 2.886371e-02	ci left: 6.389496e-01	ci right 6.577639e-01	k: 6484	n:10000
IL7   10000 perm   1 sec   (6750 perm/sec)   p_kst 6.484000e-01   p_cons 5.984000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IL7.2_558_10000_0.6484_0.5984_1.png
                gene_name: IL7
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
IL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.815390e-02	ci left: 1.930849e-01	ci right 2.088897e-01	k: 2009	n:10000
Cons ci ratio: 2.973629e-02	ci left: 6.251744e-01	ci right 6.441471e-01	k: 6347	n:10000
KS ci ratio: 2.571973e-01	ci left: 1.977670e-02	ci right 2.570584e-02	k: 226	n:10000
IL9   10000 perm   1 sec   (6874 perm/sec)   p_kst 2.260000e-02   p_cons 6.347000e-01   p_joint 2.009000e-01

Joint ci ratio: 6.077303e-02	ci left: 1.669410e-01	ci right 1.774545e-01	k: 3443	n:20000
Cons ci ratio: 2.093258e-02	ci left: 6.300904e-01	ci right 6.434698e-01	k: 12736	n:20000
KS ci ratio: 1.867697e-01	ci left: 1.953462e-02	ci right 2.360613e-02	k: 430	n:20000
IL9   20000 perm   3 sec   (5968 perm/sec)   p_kst 2.150000e-02   p_cons 6.368000e-01   p_joint 1.721500e-01

Joint ci ratio: 5.659500e-02	ci left: 1.339510e-01	ci right 1.417859e-01	k: 4135	n:30000
Cons ci ratio: 1.710149e-02	ci left: 6.310608e-01	ci right 6.419795e-01	k: 19096	n:30000
KS ci ratio: 1.505461e-01	ci left: 2.043410e-02	ci right 2.379267e-02	k: 662	n:30000
IL9   30000 perm   5 sec   (5648 perm/sec)   p_kst 2.206667e-02   p_cons 6.365333e-01   p_joint 1.378333e-01

Joint ci ratio: 5.368202e-02	ci left: 1.144585e-01	ci right 1.207971e-01	k: 4704	n:40000
Cons ci ratio: 1.479631e-02	ci left: 6.322402e-01	ci right 6.416899e-01	k: 25479	n:40000
KS ci ratio: 1.299271e-01	ci left: 2.080263e-02	ci right 2.371730e-02	k: 889	n:40000
IL9   40000 perm   7 sec   (5435 perm/sec)   p_kst 2.222500e-02   p_cons 6.369750e-01   p_joint 1.176000e-01

Joint ci ratio: 4.884323e-02	ci left: 1.113257e-01	ci right 1.169192e-01	k: 5705	n:50000
Cons ci ratio: 1.321182e-02	ci left: 6.335291e-01	ci right 6.419749e-01	k: 31888	n:50000
KS ci ratio: 1.164517e-01	ci left: 2.086809e-02	ci right 2.346779e-02	k: 1107	n:50000
IL9   50000 perm   9 sec   (5279 perm/sec)   p_kst 2.214000e-02   p_cons 6.377600e-01   p_joint 1.141000e-01

Joint ci ratio: 4.364058e-02	ci left: 1.159406e-01	ci right 1.211297e-01	k: 7111	n:60000
Cons ci ratio: 1.204664e-02	ci left: 6.344404e-01	ci right 6.421462e-01	k: 38298	n:60000
KS ci ratio: 1.069906e-01	ci left: 2.071130e-02	ci right 2.306860e-02	k: 1312	n:60000
IL9   60000 perm   12 sec   (5142 perm/sec)   p_kst 2.186667e-02   p_cons 6.383000e-01   p_joint 1.185167e-01

Joint ci ratio: 3.768618e-02	ci left: 1.313428e-01	ci right 1.364019e-01	k: 9370	n:70000
Cons ci ratio: 1.116685e-02	ci left: 6.341551e-01	ci right 6.412906e-01	k: 44641	n:70000
KS ci ratio: 9.836160e-02	ci left: 2.109337e-02	ci right 2.328934e-02	k: 1552	n:70000
IL9   70000 perm   14 sec   (5019 perm/sec)   p_kst 2.217143e-02   p_cons 6.377286e-01   p_joint 1.338571e-01

Outputting figure to mutsig2_images.part000000000085/IL9.2_455_70000_0.022171_0.63773_0.13386.png
                gene_name: IL9
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 75 percent done.
ILDR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.020443e-03	ci left: 9.558684e-01	ci right 9.636608e-01	k: 9599	n:10000
KS ci ratio: 2.024777e-02	ci left: 7.812748e-01	ci right 7.973563e-01	k: 7894	n:10000
ILDR2   10000 perm   2 sec   (6329 perm/sec)   p_kst 7.894000e-01   p_cons 9.599000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/ILDR2.2_1960_10000_0.7894_0.9599_1.png
                gene_name: ILDR2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
ILVBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.633558e-02	ci left: 5.279684e-01	ci right 5.476096e-01	k: 5378	n:10000
KS ci ratio: 1.975368e-02	ci left: 7.894875e-01	ci right 8.053389e-01	k: 7975	n:10000
ILVBL   10000 perm   2 sec   (6154 perm/sec)   p_kst 7.975000e-01   p_cons 5.378000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/ILVBL.2_1959_10000_0.7975_0.5378_1.png
                gene_name: ILVBL
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
IMPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.031596e-02	ci left: 9.303005e-01	ci right 9.400441e-01	k: 9353	n:10000
KS ci ratio: 2.755249e-02	ci left: 6.599808e-01	ci right 6.785206e-01	k: 6693	n:10000
IMPA1   10000 perm   2 sec   (6531 perm/sec)   p_kst 6.693000e-01   p_cons 9.353000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IMPA1.2_1047_10000_0.6693_0.9353_1.png
                gene_name: IMPA1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
IMPA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.627716e-02	ci left: 5.287694e-01	ci right 5.484081e-01	k: 5386	n:10000
KS ci ratio: 2.210077e-02	ci left: 7.502904e-01	ci right 7.671586e-01	k: 7588	n:10000
IMPA2   10000 perm   2 sec   (6459 perm/sec)   p_kst 7.588000e-01   p_cons 5.386000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IMPA2.2_899_10000_0.7588_0.5386_1.png
                gene_name: IMPA2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
IMPDH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.391754e-02	ci left: 3.363745e-01	ci right 3.551154e-01	k: 3457	n:10000
KS ci ratio: 1.350161e-02	ci left: 8.878013e-01	ci right 8.999681e-01	k: 8940	n:10000
IMPDH1   10000 perm   2 sec   (6020 perm/sec)   p_kst 8.940000e-01   p_cons 3.457000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/IMPDH1.2_1882_10000_0.894_0.3457_1.png
                gene_name: IMPDH1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
INA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.205181e-02	ci left: 9.080250e-01	ci right 9.191326e-01	k: 9137	n:10000
KS ci ratio: 8.265884e-02	ci left: 1.759564e-01	ci right 1.912283e-01	k: 1835	n:10000
INA   10000 perm   2 sec   (6596 perm/sec)   p_kst 1.835000e-01   p_cons 9.137000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/INA.2_1512_10000_0.1835_0.9137_1.png
                gene_name: INA
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
ING3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.750290e-02	ci left: 8.263569e-01	ci right 8.410482e-01	k: 8338	n:10000
Cons ci ratio: 3.234426e-02	ci left: 5.852018e-01	ci right 6.045429e-01	k: 5949	n:10000
KS ci ratio: 3.137362e-02	ci left: 5.998573e-01	ci right 6.190789e-01	k: 6095	n:10000
ING3   10000 perm   2 sec   (6351 perm/sec)   p_kst 6.095000e-01   p_cons 5.949000e-01   p_joint 8.338000e-01

Outputting figure to mutsig2_images.part000000000085/ING3.2_1321_10000_0.6095_0.5949_0.8338.png
                gene_name: ING3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 88 percent done.
ING4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.665833e-02	ci left: 5.235635e-01	ci right 5.432170e-01	k: 5334	n:10000
Cons ci ratio: 3.454578e-02	ci left: 5.530107e-01	ci right 5.725527e-01	k: 5628	n:10000
KS ci ratio: 7.180414e-02	ci left: 2.212878e-01	ci right 2.378700e-01	k: 2295	n:10000
ING4   10000 perm   2 sec   (6626 perm/sec)   p_kst 2.295000e-01   p_cons 5.628000e-01   p_joint 5.334000e-01

Outputting figure to mutsig2_images.part000000000085/ING4.2_782_10000_0.2295_0.5628_0.5334.png
                gene_name: ING4
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 89 percent done.
INHA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.270890e-02	ci left: 2.169452e-01	ci right 2.334152e-01	k: 2251	n:10000
Cons ci ratio: 6.323539e-02	ci left: 2.687398e-01	ci right 2.863900e-01	k: 2775	n:10000
KS ci ratio: 1.424392e-01	ci left: 6.536500e-02	ci right 7.548697e-02	k: 703	n:10000
INHA   10000 perm   2 sec   (6432 perm/sec)   p_kst 7.030000e-02   p_cons 2.775000e-01   p_joint 2.251000e-01

Joint ci ratio: 5.638971e-02	ci left: 1.890835e-01	ci right 2.001054e-01	k: 3891	n:20000
Cons ci ratio: 4.516461e-02	ci left: 2.673802e-01	ci right 2.797857e-01	k: 5471	n:20000
KS ci ratio: 1.007218e-01	ci left: 6.684339e-02	ci right 7.398211e-02	k: 1407	n:20000
INHA   20000 perm   3 sec   (5717 perm/sec)   p_kst 7.035000e-02   p_cons 2.735500e-01   p_joint 1.945500e-01

Joint ci ratio: 3.442620e-02	ci left: 2.965420e-01	ci right 3.069631e-01	k: 9052	n:30000
Cons ci ratio: 3.657612e-02	ci left: 2.717754e-01	ci right 2.819345e-01	k: 8305	n:30000
KS ci ratio: 8.188564e-02	ci left: 6.805338e-02	ci right 7.389670e-02	k: 2128	n:30000
INHA   30000 perm   6 sec   (5412 perm/sec)   p_kst 7.093333e-02   p_cons 2.768333e-01   p_joint 3.017333e-01

Outputting figure to mutsig2_images.part000000000085/INHA.2_1109_30000_0.070933_0.27683_0.30173.png
                gene_name: INHA
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 91 percent done.
INMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.823653e-02	ci left: 8.144611e-01	ci right 8.295509e-01	k: 8221	n:10000
KS ci ratio: 6.067200e-02	ci left: 2.854779e-01	ci right 3.034419e-01	k: 2944	n:10000
INMT   10000 perm   1 sec   (6855 perm/sec)   p_kst 2.944000e-01   p_cons 8.221000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/INMT.2_804_10000_0.2944_0.8221_1.png
                gene_name: INMT
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
INO80D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.225711e-02	ci left: 5.865064e-01	ci right 6.058375e-01	k: 5962	n:10000
KS ci ratio: 5.234648e-02	ci left: 3.497889e-01	ci right 3.686932e-01	k: 3592	n:10000
INO80D   10000 perm   2 sec   (5550 perm/sec)   p_kst 3.592000e-01   p_cons 5.962000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000085/INO80D.2_3120_10000_0.3592_0.5962_1.png
                gene_name: INO80D
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
INO80E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.901255e-03	ci left: 9.820981e-01	ci right 9.870138e-01	k: 9847	n:10000
Cons ci ratio: 4.341748e-02	ci left: 4.392173e-01	ci right 4.588124e-01	k: 4490	n:10000
KS ci ratio: 3.759650e-02	ci left: 5.109538e-01	ci right 5.306341e-01	k: 5208	n:10000
INO80E   10000 perm   2 sec   (6661 perm/sec)   p_kst 5.208000e-01   p_cons 4.490000e-01   p_joint 9.847000e-01

Outputting figure to mutsig2_images.part000000000085/INO80E.2_763_10000_0.5208_0.449_0.9847.png
                gene_name: INO80E
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 96 percent done.
INPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.618131e-02	ci left: 6.823426e-01	ci right 7.005457e-01	k: 6915	n:10000
Cons ci ratio: 3.766434e-02	ci left: 5.100533e-01	ci right 5.297351e-01	k: 5199	n:10000
KS ci ratio: 4.607595e-02	ci left: 4.101016e-01	ci right 4.295451e-01	k: 4198	n:10000
INPP1   10000 perm   2 sec   (6581 perm/sec)   p_kst 4.198000e-01   p_cons 5.199000e-01   p_joint 6.915000e-01

Outputting figure to mutsig2_images.part000000000085/INPP1.2_1220_10000_0.4198_0.5199_0.6915.png
                gene_name: INPP1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 98 percent done.
INPP5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.780142e-02	ci left: 3.923700e-01	ci right 4.116871e-01	k: 4020	n:10000
Cons ci ratio: 7.864387e-02	ci left: 1.911149e-01	ci right 2.068608e-01	k: 1989	n:10000
KS ci ratio: 3.536729e-02	ci left: 5.413880e-01	ci right 5.609822e-01	k: 5512	n:10000
INPP5A   10000 perm   2 sec   (6346 perm/sec)   p_kst 5.512000e-01   p_cons 1.989000e-01   p_joint 4.020000e-01

Outputting figure to mutsig2_images.part000000000085/INPP5A.2_1299_10000_0.5512_0.1989_0.402.png
                gene_name: INPP5A
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000085
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 85 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1706>
Subject: Job 9893977: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1706>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000086> was used as the working directory.
Started at Sat Oct  6 00:13:43 2012
Results reported at Sat Oct  6 00:25:54 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000086.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000086.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 86  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000086.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    768.42 sec.
    Max Memory :      3539 MB
    Max Swap   :      5898 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
86
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 86
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 86: processing genes 7664 - 7753
Calculating significance of each gene.
Using projection method.
7664	INSR	8.221134e-01
7665	INSRR	5.555680e-01
7666	INTS1	9.838935e-01
7667	INTS10	8.635133e-01
7668	INTS12	4.834479e-01
7669	INTS2	6.001986e-01
7670	INTS3	3.128615e-01
7671	INTS4	5.880212e-01
7672	INTS5	5.998163e-01
7673	INTS6	2.598352e-01
7674	INTS7	2.124696e-01
7675	INTS8	4.486950e-01
7676	INTS9	9.003546e-01
7677	INTU	4.165287e-01
7678	INVS	2.818813e-01
7679	IP6K1	2.510325e-01
7680	IP6K2	7.848302e-01
7681	IP6K3	2.357041e-01
7682	IPCEF1	1
7683	IPMK	2.937314e-01
7684	IPO11	7.796491e-01
7685	IPO13	3.903580e-01
7686	IPO4	8.630420e-01
7687	IPO5	6.732928e-01
7688	IPO7	5.256664e-01
7689	IPO8	2.158383e-02
7690	IPO9	4.391201e-01
7691	IPP	5.175528e-01
7692	IPPK	7.574458e-01
7693	IQCA1	1.319602e-01
7694	IQCB1	8.802937e-03
7695	IQCC	1
7696	IQCD	1.585972e-01
7697	IQCE	1.928364e-01
7698	IQCF1	1.202821e-01
7699	IQCF2	1.334445e-01
7700	IQCF3	3.241081e-02
7701	IQCG	2.845542e-01
7702	IQCH	3.862697e-01
7703	IQCJ	2.741088e-01
7704	IQCK	3.889943e-01
7705	IQGAP1	3.140041e-01
7706	IQGAP2	6.248324e-02
7707	IQGAP3	1.879474e-01
7708	IQSEC1	7.557315e-01
7709	IQSEC2	4.320113e-01
7710	IQSEC3	9.902943e-01
7711	IQUB	2.202281e-01
7712	IRAK1	9.085884e-01
7713	IRAK1BP1	3.069133e-01
7714	IRAK2	1.619918e-01
7715	IRAK3	6.900272e-01
7716	IRAK4	2.487144e-01
7717	IREB2	5.809530e-01
7718	IRF1	5.626600e-01
7719	IRF2	4.853217e-01
7720	IRF2BP1	1
7721	IRF2BP2	1
7722	IRF3	5.393054e-01
7723	IRF4	3.333849e-01
7724	IRF5	4.861855e-01
7725	IRF6	6.718625e-01
7726	IRF7	1
7727	IRF8	1
7728	IRF9	2.255003e-01
7729	IRGC	8.265892e-01
7730	IRGQ	9.665252e-01
7731	IRS1	6.253536e-01
7732	IRS2	1
7733	IRS4	3.811539e-02
7734	IRX1	5.864610e-01
7735	IRX2	6.874384e-01
7736	IRX3	1.338364e-01
7737	IRX4	1
7738	IRX5	4.525850e-01
7739	IRX6	1.509044e-01
7740	ISCA1	3.536581e-01
7741	ISCA1P1	1
7742	ISCA2	1
7743	ISCU	2.292033e-01
7744	ISG15	1
7745	ISG20	5.622168e-01
7746	ISG20L2	6.866596e-01
7747	ISL1	3.306890e-04
7748	ISL2	1
7749	ISLR	3.783035e-01
7750	ISLR2	8.300323e-01
7751	ISM1	8.141784e-01
7752	ISM2	9.027601e-01
7753	ISOC1	1
Done

Running MutSig 2:
Scatter job 86: processing genes 7664 - 7753
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
IRS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.119598e-02	ci left: 6.025685e-01	ci right 6.217661e-01	k: 6122	n:10000
KS ci ratio: 1.609321e-02	ci left: 8.487612e-01	ci right 8.626309e-01	k: 8558	n:10000
IRS4   10000 perm   3 sec   (3980 perm/sec)   p_kst 8.558000e-01   p_cons 6.122000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IRS4.15_3778_10000_0.8558_0.6122_1.png
                gene_name: IRS4
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 1 percent done.
IQGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.634093e-02	ci left: 6.797224e-01	ci right 6.979674e-01	k: 6889	n:10000
KS ci ratio: 6.675939e-03	ci left: 9.684703e-01	ci right 9.750510e-01	k: 9719	n:10000
IQGAP1   10000 perm   2 sec   (4128 perm/sec)   p_kst 9.719000e-01   p_cons 6.889000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IQGAP1.13_5126_10000_0.9719_0.6889_1.png
                gene_name: IQGAP1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
IPO8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.243755e-02	ci left: 3.489937e-01	ci right 3.678888e-01	k: 3584	n:10000
Cons ci ratio: 4.370816e-02	ci left: 4.359251e-01	ci right 4.555065e-01	k: 4457	n:10000
KS ci ratio: 5.775266e-02	ci left: 3.061982e-01	ci right 3.245095e-01	k: 3153	n:10000
IPO8   10000 perm   2 sec   (4632 perm/sec)   p_kst 3.153000e-01   p_cons 4.457000e-01   p_joint 3.584000e-01

Outputting figure to mutsig2_images.part000000000086/IPO8.12_3214_10000_0.3153_0.4457_0.3584.png
                gene_name: IPO8
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 4 percent done.
IQGAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.181688e-02	ci left: 5.931307e-01	ci right 6.124094e-01	k: 6028	n:10000
Cons ci ratio: 8.630829e-02	ci left: 1.635689e-01	ci right 1.784233e-01	k: 1709	n:10000
KS ci ratio: 9.326530e-03	ci left: 9.419078e-01	ci right 9.508299e-01	k: 9465	n:10000
IQGAP2   10000 perm   2 sec   (4380 perm/sec)   p_kst 9.465000e-01   p_cons 1.709000e-01   p_joint 6.028000e-01

Outputting figure to mutsig2_images.part000000000086/IQGAP2.12_4872_10000_0.9465_0.1709_0.6028.png
                gene_name: IQGAP2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 6 percent done.
IQGAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.028186e-01	ci left: 1.203376e-01	ci right 1.334806e-01	k: 1268	n:10000
Cons ci ratio: 1.219806e-01	ci left: 8.786290e-02	ci right 9.937509e-02	k: 935	n:10000
KS ci ratio: 6.419492e-02	ci left: 2.628009e-01	ci right 2.803323e-01	k: 2715	n:10000
IQGAP3   10000 perm   2 sec   (4392 perm/sec)   p_kst 2.715000e-01   p_cons 9.350000e-02   p_joint 1.268000e-01

Joint ci ratio: 9.447857e-02	ci left: 7.549372e-02	ci right 8.302914e-02	k: 1584	n:20000
Cons ci ratio: 9.091253e-02	ci left: 8.117049e-02	ci right 8.895064e-02	k: 1700	n:20000
KS ci ratio: 4.535856e-02	ci left: 2.656924e-01	ci right 2.780739e-01	k: 5437	n:20000
IQGAP3   20000 perm   5 sec   (4017 perm/sec)   p_kst 2.718500e-01   p_cons 8.500000e-02   p_joint 7.920000e-02

Outputting figure to mutsig2_images.part000000000086/IQGAP3.11_5048_20000_0.27185_0.085_0.0792.png
                gene_name: IQGAP3
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.083 

Current progress: 7 percent done.
IQCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.307477e-02	ci left: 1.744810e-01	ci right 1.897046e-01	k: 1820	n:10000
Cons ci ratio: 9.834058e-02	ci left: 1.303171e-01	ci right 1.438950e-01	k: 1370	n:10000
KS ci ratio: 7.712279e-02	ci left: 1.973215e-01	ci right 2.132506e-01	k: 2052	n:10000
IQCA1   10000 perm   2 sec   (5090 perm/sec)   p_kst 2.052000e-01   p_cons 1.370000e-01   p_joint 1.820000e-01

Outputting figure to mutsig2_images.part000000000086/IQCA1.9_2545_10000_0.2052_0.137_0.182.png
                gene_name: IQCA1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 9 percent done.
ISL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.787322e-02	ci left: 3.053055e-01	ci right 3.236027e-01	k: 3144	n:10000
Cons ci ratio: 2.281878e-02	ci left: 7.382572e-01	ci right 7.553988e-01	k: 7469	n:10000
KS ci ratio: 8.834118e-02	ci left: 1.571841e-01	ci right 1.718119e-01	k: 1644	n:10000
ISL1   10000 perm   2 sec   (5599 perm/sec)   p_kst 1.644000e-01   p_cons 7.469000e-01   p_joint 3.144000e-01

Outputting figure to mutsig2_images.part000000000086/ISL1.9_1074_10000_0.1644_0.7469_0.3144.png
                gene_name: ISL1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 10 percent done.
INSRR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.209943e-02	ci left: 4.544868e-01	ci right 4.741340e-01	k: 4643	n:10000
Cons ci ratio: 1.858457e-02	ci left: 8.087717e-01	ci right 8.240436e-01	k: 8165	n:10000
KS ci ratio: 6.465227e-02	ci left: 2.600302e-01	ci right 2.775047e-01	k: 2687	n:10000
INSRR   10000 perm   2 sec   (4503 perm/sec)   p_kst 2.687000e-01   p_cons 8.165000e-01   p_joint 4.643000e-01

Outputting figure to mutsig2_images.part000000000086/INSRR.8_3982_10000_0.2687_0.8165_0.4643.png
                gene_name: INSRR
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 12 percent done.
INTS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.122612e-02	ci left: 1.811711e-01	ci right 1.966105e-01	k: 1888	n:10000
Cons ci ratio: 1.116726e-02	ci left: 9.196628e-01	ci right 9.300880e-01	k: 9250	n:10000
KS ci ratio: 1.489128e-01	ci left: 5.995589e-02	ci right 6.969950e-02	k: 647	n:10000
INTS7   10000 perm   2 sec   (5234 perm/sec)   p_kst 6.470000e-02   p_cons 9.250000e-01   p_joint 1.888000e-01

Joint ci ratio: 5.961589e-02	ci left: 1.724244e-01	ci right 1.830695e-01	k: 3554	n:20000
Cons ci ratio: 7.917343e-03	ci left: 9.208536e-01	ci right 9.282224e-01	k: 18492	n:20000
KS ci ratio: 1.041021e-01	ci left: 6.274367e-02	ci right 6.968309e-02	k: 1323	n:20000
INTS7   20000 perm   4 sec   (4719 perm/sec)   p_kst 6.615000e-02   p_cons 9.246000e-01   p_joint 1.777000e-01

Joint ci ratio: 5.771682e-02	ci left: 1.294069e-01	ci right 1.371310e-01	k: 3997	n:30000
Cons ci ratio: 6.641490e-03	ci left: 9.176187e-01	ci right 9.237662e-01	k: 27622	n:30000
KS ci ratio: 8.423012e-02	ci left: 6.449025e-02	ci right 7.019389e-02	k: 2019	n:30000
INTS7   30000 perm   7 sec   (4521 perm/sec)   p_kst 6.730000e-02   p_cons 9.207333e-01   p_joint 1.332333e-01

Outputting figure to mutsig2_images.part000000000086/INTS7.8_2969_30000_0.0673_0.92073_0.13323.png
                gene_name: INTS7
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 13 percent done.
IRAK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.490568e-02	ci left: 7.034174e-01	ci right 7.212588e-01	k: 7124	n:10000
Cons ci ratio: 3.663624e-02	ci left: 5.238638e-01	ci right 5.435165e-01	k: 5337	n:10000
KS ci ratio: 3.608784e-02	ci left: 5.313727e-01	ci right 5.510033e-01	k: 5412	n:10000
IRAK2   10000 perm   2 sec   (5605 perm/sec)   p_kst 5.412000e-01   p_cons 5.337000e-01   p_joint 7.124000e-01

Outputting figure to mutsig2_images.part000000000086/IRAK2.8_1930_10000_0.5412_0.5337_0.7124.png
                gene_name: IRAK2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 15 percent done.
IRS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.886633e-02	ci left: 4.943505e-01	ci right 5.140471e-01	k: 5042	n:10000
KS ci ratio: 1.554170e-02	ci left: 8.573295e-01	ci right 8.708576e-01	k: 8642	n:10000
IRS1   10000 perm   2 sec   (4757 perm/sec)   p_kst 8.642000e-01   p_cons 5.042000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IRS1.8_3733_10000_0.8642_0.5042_1.png
                gene_name: IRS1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
INTS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.300347e-01	ci left: 7.785885e-02	ci right 8.878533e-02	k: 832	n:10000
Cons ci ratio: 8.895760e-03	ci left: 9.466899e-01	ci right 9.552449e-01	k: 9511	n:10000
KS ci ratio: 1.736201e-01	ci left: 4.427577e-02	ci right 5.278970e-02	k: 484	n:10000
INTS6   10000 perm   2 sec   (5321 perm/sec)   p_kst 4.840000e-02   p_cons 9.511000e-01   p_joint 8.320000e-02

Joint ci ratio: 6.232029e-02	ci left: 1.599785e-01	ci right 1.703191e-01	k: 3302	n:20000
Cons ci ratio: 6.274161e-03	ci left: 9.482257e-01	ci right 9.542422e-01	k: 19026	n:20000
KS ci ratio: 1.235085e-01	ci left: 4.498124e-02	ci right 5.095106e-02	k: 958	n:20000
INTS6   20000 perm   4 sec   (4814 perm/sec)   p_kst 4.790000e-02   p_cons 9.513000e-01   p_joint 1.651000e-01

Joint ci ratio: 5.601511e-02	ci left: 1.363883e-01	ci right 1.442815e-01	k: 4209	n:30000
Cons ci ratio: 5.122128e-03	ci left: 9.488036e-01	ci right 9.537085e-01	k: 28539	n:30000
KS ci ratio: 9.988242e-02	ci left: 4.638913e-02	ci right 5.129872e-02	k: 1464	n:30000
INTS6   30000 perm   7 sec   (4560 perm/sec)   p_kst 4.880000e-02   p_cons 9.513000e-01   p_joint 1.403000e-01

Outputting figure to mutsig2_images.part000000000086/INTS6.7_2745_30000_0.0488_0.9513_0.1403.png
                gene_name: INTS6
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 18 percent done.
IQCH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.674665e-02	ci left: 1.988982e-01	ci right 2.148729e-01	k: 2068	n:10000
Cons ci ratio: 2.920630e-02	ci left: 6.335189e-01	ci right 6.523977e-01	k: 6430	n:10000
KS ci ratio: 2.046152e-01	ci left: 3.176903e-02	ci right 3.910482e-02	k: 353	n:10000
IQCH   10000 perm   2 sec   (5488 perm/sec)   p_kst 3.530000e-02   p_cons 6.430000e-01   p_joint 2.068000e-01

Joint ci ratio: 8.900991e-02	ci left: 8.445180e-02	ci right 9.236834e-02	k: 1767	n:20000
Cons ci ratio: 2.069338e-02	ci left: 6.354109e-01	ci right 6.487477e-01	k: 12842	n:20000
KS ci ratio: 1.535677e-01	ci left: 2.912262e-02	ci right 3.401482e-02	k: 630	n:20000
IQCH   20000 perm   4 sec   (4965 perm/sec)   p_kst 3.150000e-02   p_cons 6.421000e-01   p_joint 8.835000e-02

Joint ci ratio: 8.112933e-02	ci left: 6.926340e-02	ci right 7.515310e-02	k: 2165	n:30000
Cons ci ratio: 1.738963e-02	ci left: 6.232707e-01	ci right 6.342377e-01	k: 18863	n:30000
KS ci ratio: 1.281768e-01	ci left: 2.829237e-02	ci right 3.219931e-02	k: 906	n:30000
IQCH   30000 perm   6 sec   (4757 perm/sec)   p_kst 3.020000e-02   p_cons 6.287667e-01   p_joint 7.216667e-02

Joint ci ratio: 7.300868e-02	ci left: 6.476542e-02	ci right 6.969763e-02	k: 2688	n:40000
Cons ci ratio: 1.423155e-02	ci left: 6.500922e-01	ci right 6.594354e-01	k: 26191	n:40000
KS ci ratio: 1.107845e-01	ci left: 2.866619e-02	ci right 3.205244e-02	k: 1213	n:40000
IQCH   40000 perm   9 sec   (4604 perm/sec)   p_kst 3.032500e-02   p_cons 6.547750e-01   p_joint 6.720000e-02

Joint ci ratio: 6.611935e-02	ci left: 6.350423e-02	ci right 6.786636e-02	k: 3283	n:50000
Cons ci ratio: 1.270254e-02	ci left: 6.515364e-01	ci right 6.598855e-01	k: 32786	n:50000
KS ci ratio: 1.011169e-01	ci left: 2.770259e-02	ci right 3.067240e-02	k: 1458	n:50000
IQCH   50000 perm   11 sec   (4499 perm/sec)   p_kst 2.916000e-02   p_cons 6.557200e-01   p_joint 6.566000e-02

Joint ci ratio: 6.770256e-02	ci left: 5.112231e-02	ci right 5.472108e-02	k: 3174	n:60000
Cons ci ratio: 1.158049e-02	ci left: 6.525006e-01	ci right 6.601176e-01	k: 39379	n:60000
KS ci ratio: 9.216592e-02	ci left: 2.791617e-02	ci right 3.062962e-02	k: 1755	n:60000
IQCH   60000 perm   14 sec   (4398 perm/sec)   p_kst 2.925000e-02   p_cons 6.563167e-01   p_joint 5.290000e-02

Outputting figure to mutsig2_images.part000000000086/IQCH.7_3296_60000_0.02925_0.65632_0.0529.png
                gene_name: IQCH
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.055 

Current progress: 19 percent done.
INSR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.748396e-02	ci left: 8.266621e-01	ci right 8.413428e-01	k: 8341	n:10000
Cons ci ratio: 4.637034e-02	ci left: 4.070126e-01	ci right 4.264360e-01	k: 4167	n:10000
KS ci ratio: 1.248199e-02	ci left: 9.021657e-01	ci right 9.135954e-01	k: 9080	n:10000
INSR   10000 perm   2 sec   (4758 perm/sec)   p_kst 9.080000e-01   p_cons 4.167000e-01   p_joint 8.341000e-01

Outputting figure to mutsig2_images.part000000000086/INSR.6_4237_10000_0.908_0.4167_0.8341.png
                gene_name: INSR
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 21 percent done.
INTS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.181638e-02	ci left: 3.544610e-01	ci right 3.734183e-01	k: 3639	n:10000
Cons ci ratio: 4.935709e-02	ci left: 3.771392e-01	ci right 3.963268e-01	k: 3867	n:10000
KS ci ratio: 7.029523e-02	ci left: 2.287917e-01	ci right 2.455617e-01	k: 2371	n:10000
INTS3   10000 perm   2 sec   (5257 perm/sec)   p_kst 2.371000e-01   p_cons 3.867000e-01   p_joint 3.639000e-01

Outputting figure to mutsig2_images.part000000000086/INTS3.6_3249_10000_0.2371_0.3867_0.3639.png
                gene_name: INTS3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 22 percent done.
INTS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.428867e-01	ci left: 1.068957e-02	ci right 1.520079e-02	k: 128	n:10000
Cons ci ratio: 4.668639e-01	ci left: 5.372463e-03	ci right 8.724383e-03	k: 69	n:10000
KS ci ratio: 6.257972e-02	ci left: 2.728981e-01	ci right 2.906292e-01	k: 2817	n:10000
INTS5   10000 perm   2 sec   (5655 perm/sec)   p_kst 2.817000e-01   p_cons 6.900000e-03   p_joint 1.280000e-02

Joint ci ratio: 2.249930e-01	ci left: 1.326674e-02	ci right 1.667640e-02	k: 298	n:20000
Cons ci ratio: 3.156909e-01	ci left: 6.443412e-03	ci right 8.902974e-03	k: 152	n:20000
KS ci ratio: 4.527850e-02	ci left: 2.663874e-01	ci right 2.787788e-01	k: 5451	n:20000
INTS5   20000 perm   4 sec   (5057 perm/sec)   p_kst 2.725500e-01   p_cons 7.600000e-03   p_joint 1.490000e-02

Joint ci ratio: 1.281039e-01	ci left: 2.832467e-02	ci right 3.223367e-02	k: 907	n:30000
Cons ci ratio: 2.574802e-01	ci left: 6.679709e-03	ci right 8.684070e-03	k: 229	n:30000
KS ci ratio: 3.699158e-02	ci left: 2.673015e-01	ci right 2.774093e-01	k: 8170	n:30000
INTS5   30000 perm   6 sec   (4826 perm/sec)   p_kst 2.723333e-01   p_cons 7.633333e-03   p_joint 3.023333e-02

Joint ci ratio: 1.314456e-01	ci left: 2.031864e-02	ci right 2.320137e-02	k: 869	n:40000
Cons ci ratio: 2.326054e-01	ci left: 6.229965e-03	ci right 7.892807e-03	k: 281	n:40000
KS ci ratio: 3.198458e-02	ci left: 2.686134e-01	ci right 2.773696e-01	k: 10919	n:40000
INTS5   40000 perm   9 sec   (4661 perm/sec)   p_kst 2.729750e-01   p_cons 7.025000e-03   p_joint 2.172500e-02

Joint ci ratio: 1.297044e-01	ci left: 1.677525e-02	ci right 1.912119e-02	k: 896	n:50000
Cons ci ratio: 2.047126e-01	ci left: 6.534589e-03	ci right 8.043464e-03	k: 363	n:50000
KS ci ratio: 2.869753e-02	ci left: 2.678441e-01	ci right 2.756624e-01	k: 13587	n:50000
INTS5   50000 perm   11 sec   (4552 perm/sec)   p_kst 2.717400e-01   p_cons 7.260000e-03   p_joint 1.792000e-02

Joint ci ratio: 1.158225e-01	ci left: 1.764727e-02	ci right 1.983296e-02	k: 1123	n:60000
Cons ci ratio: 1.866184e-01	ci left: 6.618540e-03	ci right 7.996428e-03	k: 437	n:60000
KS ci ratio: 2.621768e-02	ci left: 2.678779e-01	ci right 2.750109e-01	k: 16286	n:60000
INTS5   60000 perm   13 sec   (4465 perm/sec)   p_kst 2.714333e-01   p_cons 7.283333e-03   p_joint 1.871667e-02

Joint ci ratio: 1.099240e-01	ci left: 1.686117e-02	ci right 1.883623e-02	k: 1248	n:70000
Cons ci ratio: 1.707669e-01	ci left: 6.833160e-03	ci right 8.122457e-03	k: 522	n:70000
KS ci ratio: 2.427681e-02	ci left: 2.680797e-01	ci right 2.746821e-01	k: 18996	n:70000
INTS5   70000 perm   16 sec   (4356 perm/sec)   p_kst 2.713714e-01   p_cons 7.457143e-03   p_joint 1.782857e-02

Joint ci ratio: 1.047627e-01	ci left: 1.629816e-02	ci right 1.811209e-02	k: 1375	n:80000
Cons ci ratio: 1.587659e-01	ci left: 6.961829e-03	ci right 8.174293e-03	k: 604	n:80000
KS ci ratio: 2.269730e-02	ci left: 2.684950e-01	ci right 2.746716e-01	k: 21726	n:80000
INTS5   80000 perm   19 sec   (4237 perm/sec)   p_kst 2.715750e-01   p_cons 7.550000e-03   p_joint 1.718750e-02

Joint ci ratio: 1.009498e-01	ci left: 1.564530e-02	ci right 1.731941e-02	k: 1482	n:90000
Cons ci ratio: 1.477969e-01	ci left: 7.182091e-03	ci right 8.338864e-03	k: 697	n:90000
KS ci ratio: 2.142803e-02	ci left: 2.681423e-01	ci right 2.739614e-01	k: 24394	n:90000
INTS5   90000 perm   22 sec   (4164 perm/sec)   p_kst 2.710444e-01   p_cons 7.744444e-03   p_joint 1.646667e-02

Joint ci ratio: 8.950525e-02	ci left: 1.797696e-02	ci right 1.967111e-02	k: 1881	n:100000
Cons ci ratio: 1.409059e-01	ci left: 7.138596e-03	ci right 8.230250e-03	k: 767	n:100000
KS ci ratio: 2.030301e-02	ci left: 2.687851e-01	ci right 2.743082e-01	k: 27154	n:100000
INTS5   100000 perm   24 sec   (4100 perm/sec)   p_kst 2.715400e-01   p_cons 7.670000e-03   p_joint 1.881000e-02

Joint ci ratio: 8.705268e-02	ci left: 1.731147e-02	ci right 1.889590e-02	k: 1990	n:110000
Cons ci ratio: 1.340133e-01	ci left: 7.200698e-03	ci right 8.243690e-03	k: 848	n:110000
KS ci ratio: 1.940654e-02	ci left: 2.679308e-01	ci right 2.731904e-01	k: 29761	n:110000
INTS5   110000 perm   27 sec   (4035 perm/sec)   p_kst 2.705545e-01   p_cons 7.709091e-03   p_joint 1.809091e-02

Joint ci ratio: 8.779457e-02	ci left: 1.562371e-02	ci right 1.706647e-02	k: 1960	n:120000
Cons ci ratio: 1.284606e-01	ci left: 7.205126e-03	ci right 8.202220e-03	k: 923	n:120000
KS ci ratio: 1.856806e-02	ci left: 2.683038e-01	ci right 2.733406e-01	k: 32498	n:120000
INTS5   120000 perm   31 sec   (3910 perm/sec)   p_kst 2.708167e-01   p_cons 7.691667e-03   p_joint 1.633333e-02

Joint ci ratio: 8.677858e-02	ci left: 1.478277e-02	ci right 1.613127e-02	k: 2008	n:130000
Cons ci ratio: 1.241100e-01	ci left: 7.142526e-03	ci right 8.095019e-03	k: 989	n:130000
KS ci ratio: 1.782408e-02	ci left: 2.687462e-01	ci right 2.735871e-01	k: 35251	n:130000
INTS5   130000 perm   34 sec   (3855 perm/sec)   p_kst 2.711615e-01   p_cons 7.607692e-03   p_joint 1.544615e-02

Joint ci ratio: 6.796901e-02	ci left: 2.241776e-02	ci right 2.400207e-02	k: 3248	n:140000
Cons ci ratio: 1.151183e-01	ci left: 7.741183e-03	ci right 8.693640e-03	k: 1149	n:140000
KS ci ratio: 1.717934e-02	ci left: 2.687513e-01	ci right 2.734153e-01	k: 37951	n:140000
INTS5   140000 perm   37 sec   (3804 perm/sec)   p_kst 2.710786e-01   p_cons 8.207143e-03   p_joint 2.320000e-02

Joint ci ratio: 6.457194e-02	ci left: 2.320511e-02	ci right 2.476003e-02	k: 3596	n:150000
Cons ci ratio: 1.114039e-01	ci left: 7.730371e-03	ci right 8.648792e-03	k: 1227	n:150000
KS ci ratio: 1.658112e-02	ci left: 2.692039e-01	ci right 2.737116e-01	k: 40718	n:150000
INTS5   150000 perm   40 sec   (3746 perm/sec)   p_kst 2.714533e-01   p_cons 8.180000e-03   p_joint 2.397333e-02

Joint ci ratio: 6.178953e-02	ci left: 2.377878e-02	ci right 2.530102e-02	k: 3925	n:160000
Cons ci ratio: 1.081108e-01	ci left: 7.709179e-03	ci right 8.596283e-03	k: 1303	n:160000
KS ci ratio: 1.604943e-02	ci left: 2.694029e-01	ci right 2.737679e-01	k: 43453	n:160000
INTS5   160000 perm   43 sec   (3695 perm/sec)   p_kst 2.715812e-01   p_cons 8.143750e-03   p_joint 2.453125e-02

Joint ci ratio: 6.093565e-02	ci left: 2.304005e-02	ci right 2.449390e-02	k: 4039	n:170000
Cons ci ratio: 1.050167e-01	ci left: 7.702291e-03	ci right 8.561669e-03	k: 1381	n:170000
KS ci ratio: 1.556349e-02	ci left: 2.696392e-01	ci right 2.738745e-01	k: 46198	n:170000
INTS5   170000 perm   47 sec   (3648 perm/sec)   p_kst 2.717529e-01   p_cons 8.123529e-03   p_joint 2.375882e-02

Joint ci ratio: 5.982798e-02	ci left: 2.259706e-02	ci right 2.399613e-02	k: 4192	n:180000
Cons ci ratio: 1.019629e-01	ci left: 7.728979e-03	ci right 8.564756e-03	k: 1465	n:180000
KS ci ratio: 1.512151e-02	ci left: 2.697900e-01	ci right 2.739062e-01	k: 48932	n:180000
INTS5   180000 perm   50 sec   (3601 perm/sec)   p_kst 2.718444e-01   p_cons 8.138889e-03   p_joint 2.328889e-02

Joint ci ratio: 6.475712e-02	ci left: 1.830796e-02	ci right 1.953836e-02	k: 3594	n:190000
Cons ci ratio: 9.922544e-02	ci left: 7.742915e-03	ci right 8.556410e-03	k: 1547	n:190000
KS ci ratio: 1.471849e-02	ci left: 2.698372e-01	ci right 2.738435e-01	k: 51649	n:190000
INTS5   190000 perm   53 sec   (3555 perm/sec)   p_kst 2.718368e-01   p_cons 8.142105e-03   p_joint 1.891579e-02

Outputting figure to mutsig2_images.part000000000086/INTS5.6_3068_190000_0.27184_0.0081421_0.018916.png
                gene_name: INTS5
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.0081 
      ci_cons_bounds_left: 0.0077 
     ci_cons_bounds_right: 0.0086 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 24 percent done.
INTS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.945480e-02	ci left: 6.295976e-01	ci right 6.485213e-01	k: 6391	n:10000
Cons ci ratio: 3.398073e-02	ci left: 5.611297e-01	ci right 5.806290e-01	k: 5709	n:10000
KS ci ratio: 2.956342e-02	ci left: 6.278885e-01	ci right 6.468314e-01	k: 6374	n:10000
INTS8   10000 perm   2 sec   (4809 perm/sec)   p_kst 6.374000e-01   p_cons 5.709000e-01   p_joint 6.391000e-01

Outputting figure to mutsig2_images.part000000000086/INTS8.6_3096_10000_0.6374_0.5709_0.6391.png
                gene_name: INTS8
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 25 percent done.
INTU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.349092e-02	ci left: 5.682486e-01	ci right 5.877059e-01	k: 5780	n:10000
KS ci ratio: 2.419615e-02	ci left: 7.152252e-01	ci right 7.328441e-01	k: 7241	n:10000
INTU   10000 perm   2 sec   (5322 perm/sec)   p_kst 7.241000e-01   p_cons 5.780000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/INTU.6_2893_10000_0.7241_0.578_1.png
                gene_name: INTU
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
INVS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.088419e-02	ci left: 4.690663e-01	ci right 4.887460e-01	k: 4789	n:10000
KS ci ratio: 9.953727e-03	ci left: 9.346478e-01	ci right 9.440942e-01	k: 9395	n:10000
INVS   10000 perm   2 sec   (4960 perm/sec)   p_kst 9.395000e-01   p_cons 4.789000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/INVS.6_3262_10000_0.9395_0.4789_1.png
                gene_name: INVS
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
IPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.260207e-02	ci left: 4.485975e-01	ci right 4.682268e-01	k: 4584	n:10000
Cons ci ratio: 2.042418e-02	ci left: 7.783356e-01	ci right 7.944972e-01	k: 7865	n:10000
KS ci ratio: 8.263127e-02	ci left: 1.760548e-01	ci right 1.913299e-01	k: 1836	n:10000
IPP   10000 perm   2 sec   (5494 perm/sec)   p_kst 1.836000e-01   p_cons 7.865000e-01   p_joint 4.584000e-01

Outputting figure to mutsig2_images.part000000000086/IPP.6_1889_10000_0.1836_0.7865_0.4584.png
                gene_name: IPP
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 29 percent done.
IQCB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.968030e-02	ci left: 7.907046e-01	ci right 8.065211e-01	k: 7987	n:10000
KS ci ratio: 2.900942e-02	ci left: 6.366364e-01	ci right 6.554785e-01	k: 6461	n:10000
IQCB1   10000 perm   2 sec   (5524 perm/sec)   p_kst 6.461000e-01   p_cons 7.987000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IQCB1.6_1849_10000_0.6461_0.7987_1.png
                gene_name: IQCB1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
IREB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.394201e-02	ci left: 7.194657e-01	ci right 7.370011e-01	k: 7283	n:10000
Cons ci ratio: 8.549534e-02	ci left: 1.662222e-01	ci right 1.811684e-01	k: 1736	n:10000
KS ci ratio: 1.138285e-02	ci left: 9.168793e-01	ci right 9.274733e-01	k: 9223	n:10000
IREB2   10000 perm   2 sec   (5250 perm/sec)   p_kst 9.223000e-01   p_cons 1.736000e-01   p_joint 7.283000e-01

Outputting figure to mutsig2_images.part000000000086/IREB2.6_2980_10000_0.9223_0.1736_0.7283.png
                gene_name: IREB2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 32 percent done.
IPO13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.665833e-02	ci left: 5.235635e-01	ci right 5.432170e-01	k: 5334	n:10000
Cons ci ratio: 3.481326e-02	ci left: 5.492026e-01	ci right 5.687630e-01	k: 5590	n:10000
KS ci ratio: 5.332702e-02	ci left: 3.413419e-01	ci right 3.601452e-01	k: 3507	n:10000
IPO13   10000 perm   2 sec   (5401 perm/sec)   p_kst 3.507000e-01   p_cons 5.590000e-01   p_joint 5.334000e-01

Outputting figure to mutsig2_images.part000000000086/IPO13.5_2972_10000_0.3507_0.559_0.5334.png
                gene_name: IPO13
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 34 percent done.
IPO5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.577984e-02	ci left: 3.212809e-01	ci right 3.398179e-01	k: 3305	n:10000
Cons ci ratio: 7.277146e-02	ci left: 2.166492e-01	ci right 2.331114e-01	k: 2248	n:10000
KS ci ratio: 5.442180e-02	ci left: 3.322029e-01	ci right 3.508895e-01	k: 3415	n:10000
IPO5   10000 perm   2 sec   (5180 perm/sec)   p_kst 3.415000e-01   p_cons 2.248000e-01   p_joint 3.305000e-01

Outputting figure to mutsig2_images.part000000000086/IPO5.5_3456_10000_0.3415_0.2248_0.3305.png
                gene_name: IPO5
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 35 percent done.
IPO9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.058822e-02	ci left: 7.755997e-01	ci right 7.918347e-01	k: 7838	n:10000
KS ci ratio: 2.156933e-02	ci left: 7.591946e-01	ci right 7.758493e-01	k: 7676	n:10000
IPO9   10000 perm   2 sec   (5226 perm/sec)   p_kst 7.676000e-01   p_cons 7.838000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IPO9.5_3222_10000_0.7676_0.7838_1.png
                gene_name: IPO9
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
IQCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.142503e-02	ci left: 2.804252e-01	ci right 2.982977e-01	k: 2893	n:10000
Cons ci ratio: 3.236439e-02	ci left: 5.849008e-01	ci right 6.042441e-01	k: 5946	n:10000
KS ci ratio: 8.818083e-02	ci left: 1.576751e-01	ci right 1.723206e-01	k: 1649	n:10000
IQCE   10000 perm   2 sec   (4534 perm/sec)   p_kst 1.649000e-01   p_cons 5.946000e-01   p_joint 2.893000e-01

Outputting figure to mutsig2_images.part000000000086/IQCE.5_2176_10000_0.1649_0.5946_0.2893.png
                gene_name: IQCE
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 38 percent done.
IQSEC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.375026e-02	ci left: 1.721207e-01	ci right 1.872663e-01	k: 1796	n:10000
Cons ci ratio: 1.483020e-01	ci left: 6.043844e-02	ci right 7.021664e-02	k: 652	n:10000
KS ci ratio: 4.793088e-02	ci left: 3.910755e-01	ci right 4.103824e-01	k: 4007	n:10000
IQSEC2   10000 perm   2 sec   (4592 perm/sec)   p_kst 4.007000e-01   p_cons 6.520000e-02   p_joint 1.796000e-01

Joint ci ratio: 4.668357e-02	ci left: 2.545266e-01	ci right 2.667431e-01	k: 5212	n:20000
Cons ci ratio: 1.054301e-01	ci left: 6.123167e-02	ci right 6.809556e-02	k: 1292	n:20000
KS ci ratio: 3.442340e-02	ci left: 3.865210e-01	ci right 4.001100e-01	k: 7866	n:20000
IQSEC2   20000 perm   5 sec   (4154 perm/sec)   p_kst 3.933000e-01   p_cons 6.460000e-02   p_joint 2.606000e-01

Joint ci ratio: 5.544949e-02	ci left: 1.388260e-01	ci right 1.467766e-01	k: 4283	n:30000
Cons ci ratio: 8.931561e-02	ci left: 5.763236e-02	ci right 6.305317e-02	k: 1809	n:30000
KS ci ratio: 2.827706e-02	ci left: 3.849071e-01	ci right 3.959808e-01	k: 11713	n:30000
IQSEC2   30000 perm   8 sec   (3905 perm/sec)   p_kst 3.904333e-01   p_cons 6.030000e-02   p_joint 1.427667e-01

Outputting figure to mutsig2_images.part000000000086/IQSEC2.5_4657_30000_0.39043_0.0603_0.14277.png
                gene_name: IQSEC2
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 40 percent done.
IQUB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.062909e-02	ci left: 3.652005e-01	ci right 3.842725e-01	k: 3747	n:10000
Cons ci ratio: 5.184997e-02	ci left: 3.541627e-01	ci right 3.731168e-01	k: 3636	n:10000
KS ci ratio: 6.879415e-02	ci left: 2.365957e-01	ci right 2.535531e-01	k: 2450	n:10000
IQUB   10000 perm   2 sec   (5487 perm/sec)   p_kst 2.450000e-01   p_cons 3.636000e-01   p_joint 3.747000e-01

Outputting figure to mutsig2_images.part000000000086/IQUB.5_2424_10000_0.245_0.3636_0.3747.png
                gene_name: IQUB
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 41 percent done.
ISLR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.310703e-02	ci left: 2.150704e-01	ci right 2.314911e-01	k: 2232	n:10000
Cons ci ratio: 2.948034e-02	ci left: 6.291955e-01	ci right 6.481237e-01	k: 6387	n:10000
KS ci ratio: 1.193945e-01	ci left: 9.146191e-02	ci right 1.031739e-01	k: 972	n:10000
ISLR   10000 perm   2 sec   (6326 perm/sec)   p_kst 9.720000e-02   p_cons 6.387000e-01   p_joint 2.232000e-01

Joint ci ratio: 5.992362e-02	ci left: 1.709422e-01	ci right 1.815521e-01	k: 3524	n:20000
Cons ci ratio: 2.084443e-02	ci left: 6.320478e-01	ci right 6.454118e-01	k: 12775	n:20000
KS ci ratio: 8.454669e-02	ci left: 9.293210e-02	ci right 1.011855e-01	k: 1940	n:20000
ISLR   20000 perm   4 sec   (5652 perm/sec)   p_kst 9.700000e-02   p_cons 6.387500e-01   p_joint 1.762000e-01

Outputting figure to mutsig2_images.part000000000086/ISLR.5_1291_20000_0.097_0.63875_0.1762.png
                gene_name: ISLR
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 43 percent done.
INTS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.069629e-02	ci left: 4.713638e-01	ci right 4.910472e-01	k: 4812	n:10000
Cons ci ratio: 5.524235e-02	ci left: 3.255497e-01	ci right 3.441466e-01	k: 3348	n:10000
KS ci ratio: 4.920140e-02	ci left: 3.786320e-01	ci right 3.978331e-01	k: 3882	n:10000
INTS2   10000 perm   2 sec   (5210 perm/sec)   p_kst 3.882000e-01   p_cons 3.348000e-01   p_joint 4.812000e-01

Outputting figure to mutsig2_images.part000000000086/INTS2.4_3715_10000_0.3882_0.3348_0.4812.png
                gene_name: INTS2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 44 percent done.
INTS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.355196e-02	ci left: 1.728091e-01	ci right 1.879776e-01	k: 1803	n:10000
Cons ci ratio: 1.743772e-01	ci left: 4.389243e-02	ci right 5.237330e-02	k: 480	n:10000
KS ci ratio: 3.988998e-02	ci left: 4.813555e-01	ci right 5.010497e-01	k: 4912	n:10000
INTS4   10000 perm   2 sec   (5542 perm/sec)   p_kst 4.912000e-01   p_cons 4.800000e-02   p_joint 1.803000e-01

Joint ci ratio: 5.927148e-02	ci left: 1.741044e-01	ci right 1.847890e-01	k: 3588	n:20000
Cons ci ratio: 1.202513e-01	ci left: 4.740861e-02	ci right 5.352292e-02	k: 1008	n:20000
KS ci ratio: 2.798665e-02	ci left: 4.881969e-01	ci right 5.021045e-01	k: 9903	n:20000
INTS4   20000 perm   4 sec   (4996 perm/sec)   p_kst 4.951500e-01   p_cons 5.040000e-02   p_joint 1.794000e-01

Joint ci ratio: 4.850227e-02	ci left: 1.744455e-01	ci right 1.831501e-01	k: 5363	n:30000
Cons ci ratio: 9.776107e-02	ci left: 4.837465e-02	ci right 5.337945e-02	k: 1525	n:30000
KS ci ratio: 2.282950e-02	ci left: 4.899596e-01	ci right 5.013079e-01	k: 14869	n:30000
INTS4   30000 perm   6 sec   (4810 perm/sec)   p_kst 4.956333e-01   p_cons 5.083333e-02   p_joint 1.787667e-01

Outputting figure to mutsig2_images.part000000000086/INTS4.4_2984_30000_0.49563_0.050833_0.17877.png
                gene_name: INTS4
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 46 percent done.
IP6K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.528606e-01	ci left: 5.696592e-02	ci right 6.649137e-02	k: 616	n:10000
Cons ci ratio: 6.744565e-02	ci left: 2.439092e-01	ci right 2.610352e-01	k: 2524	n:10000
KS ci ratio: 1.822799e-01	ci left: 4.015916e-02	ci right 4.830902e-02	k: 441	n:10000
IP6K1   10000 perm   2 sec   (6078 perm/sec)   p_kst 4.410000e-02   p_cons 2.524000e-01   p_joint 6.160000e-02

Joint ci ratio: 8.595144e-02	ci left: 9.013685e-02	ci right 9.828157e-02	k: 1883	n:20000
Cons ci ratio: 4.738412e-02	ci left: 2.488711e-01	ci right 2.610002e-01	k: 5098	n:20000
KS ci ratio: 1.310014e-01	ci left: 4.003650e-02	ci right 4.569738e-02	k: 856	n:20000
IP6K1   20000 perm   4 sec   (5450 perm/sec)   p_kst 4.280000e-02   p_cons 2.549000e-01   p_joint 9.415000e-02

Joint ci ratio: 8.084807e-02	ci left: 6.972131e-02	ci right 7.562844e-02	k: 2179	n:30000
Cons ci ratio: 3.850494e-02	ci left: 2.517973e-01	ci right 2.617165e-01	k: 7702	n:30000
KS ci ratio: 1.054925e-01	ci left: 4.167427e-02	ci right 4.634789e-02	k: 1319	n:30000
IP6K1   30000 perm   6 sec   (5200 perm/sec)   p_kst 4.396667e-02   p_cons 2.567333e-01   p_joint 7.263333e-02

Joint ci ratio: 8.126252e-02	ci left: 5.273666e-02	ci right 5.722822e-02	k: 2198	n:40000
Cons ci ratio: 3.345293e-02	ci left: 2.512561e-01	ci right 2.598294e-01	k: 10221	n:40000
KS ci ratio: 9.152281e-02	ci left: 4.183960e-02	ci right 4.587696e-02	k: 1753	n:40000
IP6K1   40000 perm   8 sec   (5017 perm/sec)   p_kst 4.382500e-02   p_cons 2.555250e-01   p_joint 5.495000e-02

Outputting figure to mutsig2_images.part000000000086/IP6K1.4_1346_40000_0.043825_0.25553_0.05495.png
                gene_name: IP6K1
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 47 percent done.
IP6K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.228728e-02	ci left: 2.747796e-01	ci right 2.925466e-01	k: 2836	n:10000
Cons ci ratio: 8.908765e-02	ci left: 1.549259e-01	ci right 1.694715e-01	k: 1621	n:10000
KS ci ratio: 5.680355e-02	ci left: 3.133413e-01	ci right 3.317622e-01	k: 3225	n:10000
IP6K3   10000 perm   2 sec   (6465 perm/sec)   p_kst 3.225000e-01   p_cons 1.621000e-01   p_joint 2.836000e-01

Outputting figure to mutsig2_images.part000000000086/IP6K3.4_1253_10000_0.3225_0.1621_0.2836.png
                gene_name: IP6K3
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 49 percent done.
IPO11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.815763e-02	ci left: 5.035510e-01	ci right 5.232412e-01	k: 5134	n:10000
Cons ci ratio: 2.693242e-02	ci left: 6.700507e-01	ci right 6.884448e-01	k: 6793	n:10000
KS ci ratio: 5.357377e-02	ci left: 3.392554e-01	ci right 3.580328e-01	k: 3486	n:10000
IPO11   10000 perm   2 sec   (5482 perm/sec)   p_kst 3.486000e-01   p_cons 6.793000e-01   p_joint 5.134000e-01

Outputting figure to mutsig2_images.part000000000086/IPO11.4_3168_10000_0.3486_0.6793_0.5134.png
                gene_name: IPO11
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 50 percent done.
IPO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.878092e-02	ci left: 4.954504e-01	ci right 5.151465e-01	k: 5053	n:10000
Cons ci ratio: 7.239686e-03	ci left: 9.634151e-01	ci right 9.705095e-01	k: 9671	n:10000
KS ci ratio: 7.740754e-02	ci left: 1.961390e-01	ci right 2.120337e-01	k: 2040	n:10000
IPO4   10000 perm   2 sec   (5436 perm/sec)   p_kst 2.040000e-01   p_cons 9.671000e-01   p_joint 5.053000e-01

Outputting figure to mutsig2_images.part000000000086/IPO4.4_3366_10000_0.204_0.9671_0.5053.png
                gene_name: IPO4
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 51 percent done.
IPO7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.950589e-02	ci left: 6.287933e-01	ci right 6.477261e-01	k: 6383	n:10000
Cons ci ratio: 1.934324e-02	ci left: 7.962844e-01	ci right 8.119380e-01	k: 8042	n:10000
KS ci ratio: 4.198959e-02	ci left: 4.557846e-01	ci right 4.754354e-01	k: 4656	n:10000
IPO7   10000 perm   2 sec   (5227 perm/sec)   p_kst 4.656000e-01   p_cons 8.042000e-01   p_joint 6.383000e-01

Outputting figure to mutsig2_images.part000000000086/IPO7.4_3217_10000_0.4656_0.8042_0.6383.png
                gene_name: IPO7
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 53 percent done.
IQSEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.963746e-02	ci left: 7.914146e-01	ci right 8.072106e-01	k: 7994	n:10000
KS ci ratio: 1.629469e-02	ci left: 8.456012e-01	ci right 8.595928e-01	k: 8527	n:10000
IQSEC1   10000 perm   2 sec   (5216 perm/sec)   p_kst 8.527000e-01   p_cons 7.994000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IQSEC1.4_3520_10000_0.8527_0.7994_1.png
                gene_name: IQSEC1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
IRAK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.612086e-02	ci left: 2.015594e-01	ci right 2.176102e-01	k: 2095	n:10000
Cons ci ratio: 8.961576e-02	ci left: 1.533552e-01	ci right 1.678431e-01	k: 1605	n:10000
KS ci ratio: 7.321256e-02	ci left: 2.145771e-01	ci right 2.309847e-01	k: 2227	n:10000
IRAK4   10000 perm   2 sec   (6253 perm/sec)   p_kst 2.227000e-01   p_cons 1.605000e-01   p_joint 2.095000e-01

Outputting figure to mutsig2_images.part000000000086/IRAK4.4_1427_10000_0.2227_0.1605_0.2095.png
                gene_name: IRAK4
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 56 percent done.
IRX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
Cons ci ratio: 4.048500e-02	ci left: 4.739612e-01	ci right 4.936482e-01	k: 4838	n:10000
KS ci ratio: 6.812237e-01	ci left: 2.189796e-03	ci right 4.514469e-03	k: 32	n:10000
IRX3   10000 perm   2 sec   (5848 perm/sec)   p_kst 3.200000e-03   p_cons 4.838000e-01   p_joint 1.130000e-02

Joint ci ratio: 2.166821e-01	ci left: 1.435399e-02	ci right 1.788872e-02	k: 321	n:20000
Cons ci ratio: 2.886259e-02	ci left: 4.728045e-01	ci right 4.867014e-01	k: 9595	n:20000
KS ci ratio: 3.910091e-01	ci left: 4.024882e-03	ci right 6.023201e-03	k: 99	n:20000
IRX3   20000 perm   4 sec   (5268 perm/sec)   p_kst 4.950000e-03   p_cons 4.797500e-01   p_joint 1.605000e-02

Joint ci ratio: 1.213123e-01	ci left: 3.158952e-02	ci right 3.570144e-02	k: 1008	n:30000
Cons ci ratio: 2.302056e-02	ci left: 4.857940e-01	ci right 4.971410e-01	k: 14744	n:30000
KS ci ratio: 3.171422e-01	ci left: 4.264115e-03	ci right 5.900658e-03	k: 151	n:30000
IRX3   30000 perm   6 sec   (4821 perm/sec)   p_kst 5.033333e-03   p_cons 4.914667e-01   p_joint 3.360000e-02

Joint ci ratio: 1.369366e-01	ci left: 1.869877e-02	ci right 2.147152e-02	k: 802	n:40000
Cons ci ratio: 1.991339e-02	ci left: 4.871389e-01	ci right 4.969622e-01	k: 19682	n:40000
KS ci ratio: 2.785964e-01	ci left: 4.239341e-03	ci right 5.634023e-03	k: 196	n:40000
IRX3   40000 perm   8 sec   (4742 perm/sec)   p_kst 4.900000e-03   p_cons 4.920500e-01   p_joint 2.005000e-02

Joint ci ratio: 1.328297e-01	ci left: 1.598174e-02	ci right 1.827481e-02	k: 855	n:50000
Cons ci ratio: 1.883824e-02	ci left: 4.597009e-01	ci right 4.684633e-01	k: 23204	n:50000
KS ci ratio: 2.524244e-01	ci left: 4.194344e-03	ci right 5.424234e-03	k: 239	n:50000
IRX3   50000 perm   11 sec   (4675 perm/sec)   p_kst 4.780000e-03   p_cons 4.640800e-01   p_joint 1.710000e-02

Joint ci ratio: 1.509358e-01	ci left: 1.027706e-02	ci right 1.197073e-02	k: 666	n:60000
Cons ci ratio: 1.718534e-02	ci left: 4.604195e-01	ci right 4.684173e-01	k: 27865	n:60000
KS ci ratio: 2.332974e-01	ci left: 4.137076e-03	ci right 5.245005e-03	k: 280	n:60000
IRX3   60000 perm   13 sec   (4594 perm/sec)   p_kst 4.666667e-03   p_cons 4.644167e-01   p_joint 1.110000e-02

Joint ci ratio: 1.408573e-01	ci left: 1.017157e-02	ci right 1.172651e-02	k: 765	n:70000
Cons ci ratio: 1.510486e-02	ci left: 4.866329e-01	ci right 4.940536e-01	k: 34324	n:70000
KS ci ratio: 2.114494e-01	ci left: 4.369115e-03	ci right 5.415432e-03	k: 341	n:70000
IRX3   70000 perm   15 sec   (4519 perm/sec)   p_kst 4.871429e-03   p_cons 4.903429e-01   p_joint 1.092857e-02

Joint ci ratio: 1.187522e-01	ci left: 1.263894e-02	ci right 1.424663e-02	k: 1074	n:80000
Cons ci ratio: 1.454721e-02	ci left: 4.723215e-01	ci right 4.792553e-01	k: 38063	n:80000
KS ci ratio: 1.992992e-01	ci left: 4.332844e-03	ci right 5.303603e-03	k: 384	n:80000
IRX3   80000 perm   18 sec   (4447 perm/sec)   p_kst 4.800000e-03   p_cons 4.757875e-01   p_joint 1.342500e-02

Joint ci ratio: 1.238348e-01	ci left: 1.032881e-02	ci right 1.170298e-02	k: 990	n:90000
Cons ci ratio: 1.372684e-02	ci left: 4.720993e-01	ci right 4.786356e-01	k: 42783	n:90000
KS ci ratio: 1.888067e-01	ci left: 4.316563e-03	ci right 5.226920e-03	k: 428	n:90000
IRX3   90000 perm   21 sec   (4374 perm/sec)   p_kst 4.755556e-03   p_cons 4.753667e-01   p_joint 1.100000e-02

Joint ci ratio: 1.059658e-01	ci left: 1.278414e-02	ci right 1.422428e-02	k: 1349	n:100000
Cons ci ratio: 1.300254e-02	ci left: 4.730303e-01	ci right 4.792311e-01	k: 47613	n:100000
KS ci ratio: 1.805829e-01	ci left: 4.266408e-03	ci right 5.122710e-03	k: 468	n:100000
IRX3   100000 perm   23 sec   (4300 perm/sec)   p_kst 4.680000e-03   p_cons 4.761300e-01   p_joint 1.349000e-02

Joint ci ratio: 8.461794e-02	ci left: 1.832598e-02	ci right 1.995405e-02	k: 2104	n:110000
Cons ci ratio: 1.239707e-02	ci left: 4.731902e-01	ci right 4.791020e-01	k: 52376	n:110000
KS ci ratio: 1.695413e-01	ci left: 4.426236e-03	ci right 5.254749e-03	k: 531	n:110000
IRX3   110000 perm   26 sec   (4231 perm/sec)   p_kst 4.827273e-03   p_cons 4.761455e-01   p_joint 1.912727e-02

Joint ci ratio: 8.607050e-02	ci left: 1.625980e-02	ci right 1.773034e-02	k: 2038	n:120000
Cons ci ratio: 1.188110e-02	ci left: 4.728208e-01	ci right 4.784803e-01	k: 57078	n:120000
KS ci ratio: 1.632252e-01	ci left: 4.392805e-03	ci right 5.181420e-03	k: 573	n:120000
IRX3   120000 perm   29 sec   (4164 perm/sec)   p_kst 4.775000e-03   p_cons 4.756500e-01   p_joint 1.698333e-02

Joint ci ratio: 9.347966e-02	ci left: 1.272188e-02	ci right 1.397689e-02	k: 1734	n:130000
Cons ci ratio: 1.142477e-02	ci left: 4.725052e-01	ci right 4.779421e-01	k: 61779	n:130000
KS ci ratio: 1.568006e-01	ci left: 4.409349e-03	ci right 5.166847e-03	k: 621	n:130000
IRX3   130000 perm   32 sec   (4093 perm/sec)   p_kst 4.776923e-03   p_cons 4.752231e-01   p_joint 1.333846e-02

Joint ci ratio: 9.100844e-02	ci left: 1.248300e-02	ci right 1.368015e-02	k: 1830	n:140000
Cons ci ratio: 1.101696e-02	ci left: 4.722526e-01	ci right 4.774913e-01	k: 66482	n:140000
KS ci ratio: 1.505162e-01	ci left: 4.458423e-03	ci right 5.190889e-03	k: 674	n:140000
IRX3   140000 perm   35 sec   (4036 perm/sec)   p_kst 4.814286e-03   p_cons 4.748714e-01   p_joint 1.307143e-02

Joint ci ratio: 7.819015e-02	ci left: 1.583521e-02	ci right 1.713024e-02	k: 2471	n:150000
Cons ci ratio: 1.064465e-02	ci left: 4.722834e-01	ci right 4.773442e-01	k: 71222	n:150000
KS ci ratio: 1.444338e-01	ci left: 4.533610e-03	ci right 5.245735e-03	k: 732	n:150000
IRX3   150000 perm   38 sec   (3980 perm/sec)   p_kst 4.880000e-03   p_cons 4.748133e-01   p_joint 1.647333e-02

Joint ci ratio: 8.107629e-02	ci left: 1.381582e-02	ci right 1.498937e-02	k: 2303	n:160000
Cons ci ratio: 1.030072e-02	ci left: 4.726504e-01	ci right 4.775505e-01	k: 76016	n:160000
KS ci ratio: 1.395667e-01	ci left: 4.563720e-03	ci right 5.254408e-03	k: 784	n:160000
IRX3   160000 perm   41 sec   (3927 perm/sec)   p_kst 4.900000e-03   p_cons 4.751000e-01   p_joint 1.439375e-02

Joint ci ratio: 7.537957e-02	ci left: 1.506821e-02	ci right 1.625427e-02	k: 2661	n:170000
Cons ci ratio: 9.988457e-03	ci left: 4.729589e-01	ci right 4.777126e-01	k: 80807	n:170000
KS ci ratio: 1.354864e-01	ci left: 4.567905e-03	ci right 5.237386e-03	k: 832	n:170000
IRX3   170000 perm   44 sec   (3876 perm/sec)   p_kst 4.894118e-03   p_cons 4.753353e-01   p_joint 1.565294e-02

Joint ci ratio: 6.998017e-02	ci left: 1.653339e-02	ci right 1.773779e-02	k: 3083	n:180000
Cons ci ratio: 9.712054e-03	ci left: 4.727684e-01	ci right 4.773879e-01	k: 85514	n:180000
KS ci ratio: 1.317442e-01	ci left: 4.571886e-03	ci right 5.221995e-03	k: 880	n:180000
IRX3   180000 perm   47 sec   (3825 perm/sec)   p_kst 4.888889e-03   p_cons 4.750778e-01   p_joint 1.712778e-02

Joint ci ratio: 6.994315e-02	ci left: 1.569400e-02	ci right 1.683661e-02	k: 3089	n:190000
Cons ci ratio: 9.445822e-03	ci left: 4.732101e-01	ci right 4.777064e-01	k: 90337	n:190000
KS ci ratio: 1.282959e-01	ci left: 4.575676e-03	ci right 5.207997e-03	k: 928	n:190000
IRX3   190000 perm   50 sec   (3772 perm/sec)   p_kst 4.884211e-03   p_cons 4.754579e-01   p_joint 1.625789e-02

Joint ci ratio: 6.245791e-02	ci left: 1.871137e-02	ci right 1.992262e-02	k: 3862	n:200000
Cons ci ratio: 9.203292e-03	ci left: 4.734492e-01	ci right 4.778315e-01	k: 95128	n:200000
KS ci ratio: 1.249764e-01	ci left: 4.588975e-03	ci right 5.205510e-03	k: 978	n:200000
IRX3   200000 perm   54 sec   (3717 perm/sec)   p_kst 4.890000e-03   p_cons 4.756400e-01   p_joint 1.931000e-02

Joint ci ratio: 5.799755e-02	ci left: 2.067263e-02	ci right 2.191206e-02	k: 4470	n:210000
Cons ci ratio: 8.980245e-03	ci left: 4.735715e-01	ci right 4.778482e-01	k: 99899	n:210000
KS ci ratio: 1.219615e-01	ci left: 4.596580e-03	ci right 5.198164e-03	k: 1027	n:210000
IRX3   210000 perm   57 sec   (3662 perm/sec)   p_kst 4.890476e-03   p_cons 4.757095e-01   p_joint 2.128571e-02

Joint ci ratio: 5.672541e-02	ci left: 2.064244e-02	ci right 2.185203e-02	k: 4673	n:220000
Cons ci ratio: 8.772746e-03	ci left: 4.736794e-01	ci right 4.778576e-01	k: 104669	n:220000
KS ci ratio: 1.190993e-01	ci left: 4.608067e-03	ci right 5.196003e-03	k: 1077	n:220000
IRX3   220000 perm   61 sec   (3607 perm/sec)   p_kst 4.895455e-03   p_cons 4.757682e-01   p_joint 2.124091e-02

Joint ci ratio: 5.675838e-02	ci left: 1.974040e-02	ci right 2.089782e-02	k: 4672	n:230000
Cons ci ratio: 8.577950e-03	ci left: 4.738397e-01	ci right 4.779261e-01	k: 109453	n:230000
KS ci ratio: 1.171096e-01	ci left: 4.563827e-03	ci right 5.135718e-03	k: 1114	n:230000
IRX3   230000 perm   65 sec   (3555 perm/sec)   p_kst 4.843478e-03   p_cons 4.758826e-01   p_joint 2.031304e-02

Joint ci ratio: 5.453439e-02	ci left: 2.049995e-02	ci right 2.165333e-02	k: 5057	n:240000
Cons ci ratio: 8.393475e-03	ci left: 4.741126e-01	ci right 4.781130e-01	k: 114267	n:240000
KS ci ratio: 1.139802e-01	ci left: 4.624543e-03	ci right 5.187516e-03	k: 1176	n:240000
IRX3   240000 perm   68 sec   (3510 perm/sec)   p_kst 4.900000e-03   p_cons 4.761125e-01   p_joint 2.107083e-02

Joint ci ratio: 5.413877e-02	ci left: 1.998362e-02	ci right 2.109953e-02	k: 5134	n:250000
Cons ci ratio: 8.225090e-03	ci left: 4.740806e-01	ci right 4.780000e-01	k: 119010	n:250000
KS ci ratio: 1.114056e-01	ci left: 4.653364e-03	ci right 5.206209e-03	k: 1231	n:250000
IRX3   250000 perm   72 sec   (3466 perm/sec)   p_kst 4.924000e-03   p_cons 4.760400e-01   p_joint 2.053600e-02

Joint ci ratio: 5.433899e-02	ci left: 1.908958e-02	ci right 2.015963e-02	k: 5101	n:260000
Cons ci ratio: 8.064707e-03	ci left: 4.741594e-01	ci right 4.780027e-01	k: 123781	n:260000
KS ci ratio: 1.093830e-01	ci left: 4.646426e-03	ci right 5.187778e-03	k: 1277	n:260000
IRX3   260000 perm   76 sec   (3406 perm/sec)   p_kst 4.911538e-03   p_cons 4.760808e-01   p_joint 1.961923e-02

Joint ci ratio: 6.226655e-02	ci left: 1.401600e-02	ci right 1.492039e-02	k: 3905	n:270000
Cons ci ratio: 7.915176e-03	ci left: 4.741183e-01	ci right 4.778896e-01	k: 128521	n:270000
KS ci ratio: 1.111996e-01	ci left: 4.326633e-03	ci right 4.839646e-03	k: 1236	n:270000
IRX3   270000 perm   80 sec   (3364 perm/sec)   p_kst 4.577778e-03   p_cons 4.760037e-01   p_joint 1.446296e-02

Joint ci ratio: 6.155965e-02	ci left: 1.383536e-02	ci right 1.471760e-02	k: 3996	n:280000
Cons ci ratio: 7.769770e-03	ci left: 4.743307e-01	ci right 4.780341e-01	k: 133331	n:280000
KS ci ratio: 1.083846e-01	ci left: 4.397888e-03	ci right 4.905306e-03	k: 1301	n:280000
IRX3   280000 perm   85 sec   (3296 perm/sec)   p_kst 4.646429e-03   p_cons 4.761821e-01   p_joint 1.427143e-02

Joint ci ratio: 6.118811e-02	ci left: 1.352798e-02	ci right 1.438523e-02	k: 4046	n:290000
Cons ci ratio: 7.634731e-03	ci left: 4.743567e-01	ci right 4.779955e-01	k: 138091	n:290000
KS ci ratio: 1.065989e-01	ci left: 4.393881e-03	ci right 4.891960e-03	k: 1345	n:290000
IRX3   290000 perm   89 sec   (3257 perm/sec)   p_kst 4.637931e-03   p_cons 4.761759e-01   p_joint 1.395172e-02

Joint ci ratio: 6.242570e-02	ci left: 1.256817e-02	ci right 1.338128e-02	k: 3891	n:300000
Cons ci ratio: 7.507249e-03	ci left: 4.743314e-01	ci right 4.779090e-01	k: 142836	n:300000
KS ci ratio: 1.047095e-01	ci left: 4.406437e-03	ci right 4.896541e-03	k: 1394	n:300000
IRX3   300000 perm   93 sec   (3220 perm/sec)   p_kst 4.646667e-03   p_cons 4.761200e-01   p_joint 1.297000e-02

Joint ci ratio: 6.156378e-02	ci left: 1.251207e-02	ci right 1.330998e-02	k: 4001	n:310000
Cons ci ratio: 7.385565e-03	ci left: 4.743341e-01	ci right 4.778535e-01	k: 147589	n:310000
KS ci ratio: 1.032048e-01	ci left: 4.393111e-03	ci right 4.874286e-03	k: 1435	n:310000
IRX3   310000 perm   97 sec   (3181 perm/sec)   p_kst 4.629032e-03   p_cons 4.760935e-01   p_joint 1.290645e-02

Joint ci ratio: 6.154522e-02	ci left: 1.213330e-02	ci right 1.290681e-02	k: 4005	n:320000
Cons ci ratio: 7.269703e-03	ci left: 4.743308e-01	ci right 4.777947e-01	k: 152340	n:320000
KS ci ratio: 1.016250e-01	ci left: 4.392849e-03	ci right 4.866190e-03	k: 1480	n:320000
IRX3   320000 perm   102 sec   (3144 perm/sec)   p_kst 4.625000e-03   p_cons 4.760625e-01   p_joint 1.251563e-02

Joint ci ratio: 6.059952e-02	ci left: 1.214161e-02	ci right 1.290335e-02	k: 4131	n:330000
Cons ci ratio: 7.160129e-03	ci left: 4.742584e-01	ci right 4.776693e-01	k: 157068	n:330000
KS ci ratio: 1.001486e-01	ci left: 4.389701e-03	ci right 4.855427e-03	k: 1524	n:330000
IRX3   330000 perm   106 sec   (3109 perm/sec)   p_kst 4.618182e-03   p_cons 4.759636e-01   p_joint 1.251818e-02

Joint ci ratio: 6.015559e-02	ci left: 1.196407e-02	ci right 1.270898e-02	k: 4193	n:340000
Cons ci ratio: 7.055447e-03	ci left: 4.741848e-01	ci right 4.775451e-01	k: 161794	n:340000
KS ci ratio: 9.867149e-02	ci left: 4.392523e-03	ci right 4.851277e-03	k: 1570	n:340000
IRX3   340000 perm   111 sec   (3073 perm/sec)   p_kst 4.617647e-03   p_cons 4.758647e-01   p_joint 1.233235e-02

Outputting figure to mutsig2_images.part000000000086/IRX3.4_1522_340000_0.0046176_0.47586_0.012332.png
                gene_name: IRX3
               theta_stop: 0.099 
                    nperm: 340000 
                     p_ks: 0.0046 
        ci_ks_bounds_left: 0.0044 
       ci_ks_bounds_right: 0.0049 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 57 percent done.
IRX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.355019e-02	ci left: 3.394541e-01	ci right 3.582340e-01	k: 3488	n:10000
Cons ci ratio: 9.561004e-02	ci left: 1.369772e-01	ci right 1.508309e-01	k: 1438	n:10000
KS ci ratio: 2.795794e-02	ci left: 6.534378e-01	ci right 6.720673e-01	k: 6628	n:10000
IRX6   10000 perm   2 sec   (5931 perm/sec)   p_kst 6.628000e-01   p_cons 1.438000e-01   p_joint 3.488000e-01

Outputting figure to mutsig2_images.part000000000086/IRX6.4_1365_10000_0.6628_0.1438_0.3488.png
                gene_name: IRX6
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 59 percent done.
ISLR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.431310e-02	ci left: 3.330967e-01	ci right 3.517951e-01	k: 3424	n:10000
Cons ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
KS ci ratio: 1.116726e-02	ci left: 9.196628e-01	ci right 9.300880e-01	k: 9250	n:10000
ISLR2   10000 perm   2 sec   (5932 perm/sec)   p_kst 9.250000e-01   p_cons 1.086000e-01   p_joint 3.424000e-01

Joint ci ratio: 3.264051e-02	ci left: 4.120993e-01	ci right 4.258242e-01	k: 8379	n:20000
Cons ci ratio: 7.536455e-02	ci left: 1.146416e-01	ci right 1.236695e-01	k: 2382	n:20000
KS ci ratio: 7.760187e-03	ci left: 9.236652e-01	ci right 9.309100e-01	k: 18547	n:20000
ISLR2   20000 perm   4 sec   (5314 perm/sec)   p_kst 9.273500e-01   p_cons 1.191000e-01   p_joint 4.189500e-01

Outputting figure to mutsig2_images.part000000000086/ISLR2.4_2242_20000_0.92735_0.1191_0.41895.png
                gene_name: ISLR2
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 60 percent done.
INTS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.333331e-02	ci left: 5.705552e-01	ci right 5.899980e-01	k: 5803	n:10000
Cons ci ratio: 1.480552e-02	ci left: 8.685630e-01	ci right 8.816176e-01	k: 8752	n:10000
KS ci ratio: 4.870791e-02	ci left: 3.834095e-01	ci right 4.026528e-01	k: 3930	n:10000
INTS1   10000 perm   2 sec   (4448 perm/sec)   p_kst 3.930000e-01   p_cons 8.752000e-01   p_joint 5.803000e-01

Outputting figure to mutsig2_images.part000000000086/INTS1.3_6761_10000_0.393_0.8752_0.5803.png
                gene_name: INTS1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 62 percent done.
IQCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.280928e-02	ci left: 5.782787e-01	ci right 5.976700e-01	k: 5880	n:10000
Cons ci ratio: 8.313059e-02	ci left: 1.742843e-01	ci right 1.895015e-01	k: 1818	n:10000
KS ci ratio: 8.722590e-03	ci left: 9.485639e-01	ci right 9.569698e-01	k: 9529	n:10000
IQCD   10000 perm   2 sec   (6512 perm/sec)   p_kst 9.529000e-01   p_cons 1.818000e-01   p_joint 5.880000e-01

Outputting figure to mutsig2_images.part000000000086/IQCD.3_1052_10000_0.9529_0.1818_0.588.png
                gene_name: IQCD
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 63 percent done.
IQCF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.986017e-02	ci left: 3.723630e-01	ci right 3.915058e-01	k: 3819	n:10000
Cons ci ratio: 3.608784e-02	ci left: 5.313727e-01	ci right 5.510033e-01	k: 5412	n:10000
KS ci ratio: 7.184476e-02	ci left: 2.210904e-01	ci right 2.376675e-01	k: 2293	n:10000
IQCF1   10000 perm   2 sec   (5820 perm/sec)   p_kst 2.293000e-01   p_cons 5.412000e-01   p_joint 3.819000e-01

Outputting figure to mutsig2_images.part000000000086/IQCF1.3_634_10000_0.2293_0.5412_0.3819.png
                gene_name: IQCF1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 65 percent done.
IQCF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.487514e-02	ci left: 1.682863e-01	ci right 1.833030e-01	k: 1757	n:10000
Cons ci ratio: 1.029115e-01	ci left: 1.201421e-01	ci right 1.332762e-01	k: 1266	n:10000
KS ci ratio: 8.805305e-02	ci left: 1.580679e-01	ci right 1.727275e-01	k: 1653	n:10000
IQCF3   10000 perm   1 sec   (6868 perm/sec)   p_kst 1.653000e-01   p_cons 1.266000e-01   p_joint 1.757000e-01

Joint ci ratio: 7.280364e-02	ci left: 1.219718e-01	ci right 1.312370e-01	k: 2531	n:20000
Cons ci ratio: 7.666701e-02	ci left: 1.111506e-01	ci right 1.200615e-01	k: 2311	n:20000
KS ci ratio: 6.328675e-02	ci left: 1.558322e-01	ci right 1.660666e-01	k: 3218	n:20000
IQCF3   20000 perm   3 sec   (6044 perm/sec)   p_kst 1.609000e-01   p_cons 1.155500e-01   p_joint 1.265500e-01

Outputting figure to mutsig2_images.part000000000086/IQCF3.3_477_20000_0.1609_0.11555_0.12655.png
                gene_name: IQCF3
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 66 percent done.
IQCG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.281715e-02	ci left: 4.461024e-01	ci right 4.657233e-01	k: 4559	n:10000
Cons ci ratio: 1.634004e-02	ci left: 8.448877e-01	ci right 8.589066e-01	k: 8520	n:10000
KS ci ratio: 6.613156e-02	ci left: 2.513249e-01	ci right 2.686151e-01	k: 2599	n:10000
IQCG   10000 perm   2 sec   (6019 perm/sec)   p_kst 2.599000e-01   p_cons 8.520000e-01   p_joint 4.559000e-01

Outputting figure to mutsig2_images.part000000000086/IQCG.3_1372_10000_0.2599_0.852_0.4559.png
                gene_name: IQCG
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 68 percent done.
IRAK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.560455e-01	ci left: 1.996408e-02	ci right 2.591832e-02	k: 228	n:10000
Cons ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
KS ci ratio: 7.530342e-02	ci left: 2.051084e-01	ci right 2.212590e-01	k: 2131	n:10000
IRAK3   10000 perm   2 sec   (6112 perm/sec)   p_kst 2.131000e-01   p_cons 1.060000e-02   p_joint 2.280000e-02

Joint ci ratio: 2.478726e-01	ci left: 1.081866e-02	ci right 1.392552e-02	k: 246	n:20000
Cons ci ratio: 2.815335e-01	ci left: 8.248793e-03	ci right 1.099660e-02	k: 191	n:20000
KS ci ratio: 5.242097e-02	ci left: 2.127398e-01	ci right 2.242422e-01	k: 4369	n:20000
IRAK3   20000 perm   4 sec   (5472 perm/sec)   p_kst 2.184500e-01   p_cons 9.550000e-03   p_joint 1.230000e-02

Joint ci ratio: 2.989094e-01	ci left: 4.848747e-03	ci right 6.582421e-03	k: 170	n:30000
Cons ci ratio: 2.323291e-01	ci left: 8.307694e-03	ci right 1.052221e-02	k: 281	n:30000
KS ci ratio: 4.303279e-02	ci left: 2.119827e-01	ci right 2.213389e-01	k: 6499	n:30000
IRAK3   30000 perm   6 sec   (5223 perm/sec)   p_kst 2.166333e-01   p_cons 9.366667e-03   p_joint 5.666667e-03

Joint ci ratio: 2.899043e-01	ci left: 3.890962e-03	ci right 5.232527e-03	k: 181	n:40000
Cons ci ratio: 1.990767e-01	ci left: 8.643905e-03	ci right 1.057829e-02	k: 383	n:40000
KS ci ratio: 3.712450e-02	ci left: 2.139122e-01	ci right 2.220288e-01	k: 8718	n:40000
IRAK3   40000 perm   8 sec   (5057 perm/sec)   p_kst 2.179500e-01   p_cons 9.575000e-03   p_joint 4.525000e-03

Joint ci ratio: 1.902412e-01	ci left: 7.618678e-03	ci right 9.239171e-03	k: 420	n:50000
Cons ci ratio: 1.782476e-01	ci left: 8.725652e-03	ci right 1.045200e-02	k: 478	n:50000
KS ci ratio: 3.331418e-02	ci left: 2.132344e-01	ci right 2.204785e-01	k: 10842	n:50000
IRAK3   50000 perm   10 sec   (4936 perm/sec)   p_kst 2.168400e-01   p_cons 9.560000e-03   p_joint 8.400000e-03

Joint ci ratio: 1.912934e-01	ci left: 6.284992e-03	ci right 7.630030e-03	k: 416	n:60000
Cons ci ratio: 1.622619e-01	ci left: 8.851240e-03	ci right 1.043007e-02	k: 577	n:60000
KS ci ratio: 3.041246e-02	ci left: 2.135414e-01	ci right 2.201527e-01	k: 13010	n:60000
IRAK3   60000 perm   12 sec   (4826 perm/sec)   p_kst 2.168333e-01   p_cons 9.616667e-03   p_joint 6.933333e-03

Joint ci ratio: 1.715953e-01	ci left: 6.764772e-03	ci right 8.047997e-03	k: 517	n:70000
Cons ci ratio: 1.518637e-01	ci left: 8.712152e-03	ci right 1.015752e-02	k: 659	n:70000
KS ci ratio: 2.824620e-02	ci left: 2.127146e-01	ci right 2.188233e-01	k: 15103	n:70000
IRAK3   70000 perm   15 sec   (4720 perm/sec)   p_kst 2.157571e-01   p_cons 9.414286e-03   p_joint 7.385714e-03

Joint ci ratio: 1.695470e-01	ci left: 6.074551e-03	ci right 7.211672e-03	k: 530	n:80000
Cons ci ratio: 1.424647e-01	ci left: 8.706735e-03	ci right 1.005420e-02	k: 749	n:80000
KS ci ratio: 2.645192e-02	ci left: 2.125305e-01	ci right 2.182401e-01	k: 17230	n:80000
IRAK3   80000 perm   17 sec   (4623 perm/sec)   p_kst 2.153750e-01   p_cons 9.362500e-03   p_joint 6.625000e-03

Joint ci ratio: 1.446953e-01	ci left: 7.503315e-03	ci right 8.684276e-03	k: 727	n:90000
Cons ci ratio: 1.343774e-01	ci left: 8.736897e-03	ci right 1.000614e-02	k: 842	n:90000
KS ci ratio: 2.496117e-02	ci left: 2.123971e-01	ci right 2.177768e-01	k: 19357	n:90000
IRAK3   90000 perm   20 sec   (4537 perm/sec)   p_kst 2.150778e-01   p_cons 9.355556e-03   p_joint 8.077778e-03

Joint ci ratio: 1.454605e-01	ci left: 6.685317e-03	ci right 7.743568e-03	k: 720	n:100000
Cons ci ratio: 1.274588e-01	ci left: 8.772444e-03	ci right 9.976272e-03	k: 936	n:100000
KS ci ratio: 2.371600e-02	ci left: 2.120289e-01	ci right 2.171277e-01	k: 21457	n:100000
IRAK3   100000 perm   22 sec   (4450 perm/sec)   p_kst 2.145700e-01   p_cons 9.360000e-03   p_joint 7.200000e-03

Joint ci ratio: 1.288377e-01	ci left: 7.807506e-03	ci right 8.891383e-03	k: 917	n:110000
Cons ci ratio: 1.212722e-01	ci left: 8.838169e-03	ci right 9.987920e-03	k: 1034	n:110000
KS ci ratio: 2.262685e-02	ci left: 2.119324e-01	ci right 2.167917e-01	k: 23579	n:110000
IRAK3   110000 perm   25 sec   (4371 perm/sec)   p_kst 2.143545e-01   p_cons 9.400000e-03   p_joint 8.336364e-03

Joint ci ratio: 1.406288e-01	ci left: 5.980736e-03	ci right 6.893363e-03	k: 771	n:120000
Cons ci ratio: 1.163222e-01	ci left: 8.829370e-03	ci right 9.927870e-03	k: 1124	n:120000
KS ci ratio: 2.162699e-02	ci left: 2.126036e-01	ci right 2.172602e-01	k: 25791	n:120000
IRAK3   120000 perm   28 sec   (4298 perm/sec)   p_kst 2.149250e-01   p_cons 9.366667e-03   p_joint 6.425000e-03

Joint ci ratio: 1.238581e-01	ci left: 7.172348e-03	ci right 8.126734e-03	k: 993	n:130000
Cons ci ratio: 1.120259e-01	ci left: 8.807776e-03	ci right 9.860439e-03	k: 1212	n:130000
KS ci ratio: 2.075552e-02	ci left: 2.130682e-01	ci right 2.175445e-01	k: 27989	n:130000
IRAK3   130000 perm   31 sec   (4224 perm/sec)   p_kst 2.153000e-01   p_cons 9.323077e-03   p_joint 7.638462e-03

Joint ci ratio: 1.148668e-01	ci left: 7.775877e-03	ci right 8.730372e-03	k: 1154	n:140000
Cons ci ratio: 1.085525e-01	ci left: 8.727349e-03	ci right 9.735991e-03	k: 1291	n:140000
KS ci ratio: 2.001197e-02	ci left: 2.129571e-01	ci right 2.172690e-01	k: 30115	n:140000
IRAK3   140000 perm   34 sec   (4156 perm/sec)   p_kst 2.151071e-01   p_cons 9.221429e-03   p_joint 8.242857e-03

Joint ci ratio: 1.004025e-01	ci left: 9.554636e-03	ci right 1.057110e-02	k: 1508	n:150000
Cons ci ratio: 1.053446e-01	ci left: 8.664578e-03	ci right 9.634537e-03	k: 1371	n:150000
KS ci ratio: 1.932850e-02	ci left: 2.131158e-01	ci right 2.172818e-01	k: 32279	n:150000
IRAK3   150000 perm   37 sec   (4089 perm/sec)   p_kst 2.151933e-01   p_cons 9.140000e-03   p_joint 1.005333e-02

Joint ci ratio: 1.038957e-01	ci left: 8.360345e-03	ci right 9.282586e-03	k: 1410	n:160000
Cons ci ratio: 1.021569e-01	ci left: 8.652680e-03	ci right 9.590237e-03	k: 1458	n:160000
KS ci ratio: 1.870609e-02	ci left: 2.133379e-01	ci right 2.173725e-01	k: 34456	n:160000
IRAK3   160000 perm   40 sec   (4022 perm/sec)   p_kst 2.153500e-01   p_cons 9.112500e-03   p_joint 8.812500e-03

Joint ci ratio: 1.010383e-01	ci left: 8.332814e-03	ci right 9.225236e-03	k: 1491	n:170000
Cons ci ratio: 9.917746e-02	ci left: 8.654048e-03	ci right 9.562811e-03	k: 1547	n:170000
KS ci ratio: 1.815470e-02	ci left: 2.132660e-01	ci right 2.171790e-01	k: 36587	n:170000
IRAK3   170000 perm   43 sec   (3926 perm/sec)   p_kst 2.152176e-01   p_cons 9.100000e-03   p_joint 8.770588e-03

Joint ci ratio: 9.846758e-02	ci left: 8.297812e-03	ci right 9.162567e-03	k: 1570	n:180000
Cons ci ratio: 9.635526e-02	ci left: 8.671886e-03	ci right 9.555144e-03	k: 1639	n:180000
KS ci ratio: 1.763370e-02	ci left: 2.135027e-01	ci right 2.173065e-01	k: 38772	n:180000
IRAK3   180000 perm   47 sec   (3870 perm/sec)   p_kst 2.154000e-01   p_cons 9.105556e-03   p_joint 8.722222e-03

Outputting figure to mutsig2_images.part000000000086/IRAK3.3_1839_180000_0.2154_0.0091056_0.0087222.png
                gene_name: IRAK3
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.0091 
      ci_cons_bounds_left: 0.0087 
     ci_cons_bounds_right: 0.0096 
                  p_joint: 0.0087 
     ci_joint_bounds_left: 0.0083 
    ci_joint_bounds_right: 0.0092 

Current progress: 69 percent done.
IRF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.331998e-01	ci left: 7.436791e-02	ci right 8.507844e-02	k: 796	n:10000
Cons ci ratio: 7.805671e-02	ci left: 1.934789e-01	ci right 2.092954e-01	k: 2013	n:10000
KS ci ratio: 1.279515e-01	ci left: 8.028489e-02	ci right 9.135778e-02	k: 857	n:10000
IRF2   10000 perm   2 sec   (6359 perm/sec)   p_kst 8.570000e-02   p_cons 2.013000e-01   p_joint 7.960000e-02

Joint ci ratio: 1.015781e-01	ci left: 6.576929e-02	ci right 7.285655e-02	k: 1385	n:20000
Cons ci ratio: 5.469398e-02	ci left: 1.987305e-01	ci right 2.099556e-01	k: 4086	n:20000
KS ci ratio: 9.039081e-02	ci left: 8.205187e-02	ci right 8.986900e-02	k: 1718	n:20000
IRF2   20000 perm   4 sec   (5606 perm/sec)   p_kst 8.590000e-02   p_cons 2.043000e-01   p_joint 6.925000e-02

Joint ci ratio: 8.153578e-02	ci left: 6.860931e-02	ci right 7.447400e-02	k: 2145	n:30000
Cons ci ratio: 4.483463e-02	ci left: 1.984937e-01	ci right 2.076305e-01	k: 6091	n:30000
KS ci ratio: 7.323861e-02	ci left: 8.396534e-02	ci right 9.038154e-02	k: 2614	n:30000
IRF2   30000 perm   6 sec   (5358 perm/sec)   p_kst 8.713333e-02   p_cons 2.030333e-01   p_joint 7.150000e-02

Outputting figure to mutsig2_images.part000000000086/IRF2.3_1082_30000_0.087133_0.20303_0.0715.png
                gene_name: IRF2
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.074 

Current progress: 71 percent done.
IRF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.950098e-02	ci left: 4.862528e-01	ci right 5.059495e-01	k: 4961	n:10000
Cons ci ratio: 2.971706e-02	ci left: 6.254759e-01	ci right 6.444454e-01	k: 6350	n:10000
KS ci ratio: 5.388181e-02	ci left: 3.366725e-01	ci right 3.554172e-01	k: 3460	n:10000
IRF4   10000 perm   2 sec   (6333 perm/sec)   p_kst 3.460000e-01   p_cons 6.350000e-01   p_joint 4.961000e-01

Outputting figure to mutsig2_images.part000000000086/IRF4.3_1388_10000_0.346_0.635_0.4961.png
                gene_name: IRF4
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 72 percent done.
IRF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.792416e-02	ci left: 8.195432e-01	ci right 8.344658e-01	k: 8271	n:10000
Cons ci ratio: 5.649311e-02	ci left: 3.157228e-01	ci right 3.341792e-01	k: 3249	n:10000
KS ci ratio: 5.918697e-03	ci left: 9.747193e-01	ci right 9.805979e-01	k: 9778	n:10000
IRF5   10000 perm   2 sec   (6258 perm/sec)   p_kst 9.778000e-01   p_cons 3.249000e-01   p_joint 8.271000e-01

Outputting figure to mutsig2_images.part000000000086/IRF5.3_1577_10000_0.9778_0.3249_0.8271.png
                gene_name: IRF5
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 74 percent done.
IRF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.793668e-02	ci left: 8.193399e-01	ci right 8.342692e-01	k: 8269	n:10000
Cons ci ratio: 3.671727e-02	ci left: 5.227627e-01	ci right 5.424183e-01	k: 5326	n:10000
KS ci ratio: 2.214301e-02	ci left: 7.495823e-01	ci right 7.664671e-01	k: 7581	n:10000
IRF9   10000 perm   2 sec   (5874 perm/sec)   p_kst 7.581000e-01   p_cons 5.326000e-01   p_joint 8.269000e-01

Outputting figure to mutsig2_images.part000000000086/IRF9.3_1214_10000_0.7581_0.5326_0.8269.png
                gene_name: IRF9
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 75 percent done.
IRX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.163782e-02	ci left: 5.958412e-01	ci right 6.150973e-01	k: 6055	n:10000
Cons ci ratio: 7.854533e-02	ci left: 1.915089e-01	ci right 2.072666e-01	k: 1993	n:10000
KS ci ratio: 2.073996e-02	ci left: 7.730669e-01	ci right 7.893690e-01	k: 7813	n:10000
IRX5   10000 perm   2 sec   (6372 perm/sec)   p_kst 7.813000e-01   p_cons 1.993000e-01   p_joint 6.055000e-01

Outputting figure to mutsig2_images.part000000000086/IRX5.3_1464_10000_0.7813_0.1993_0.6055.png
                gene_name: IRX5
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 76 percent done.
INTS10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.227943e-02	ci left: 9.049403e-01	ci right 9.162192e-01	k: 9107	n:10000
Cons ci ratio: 3.969896e-02	ci left: 4.837540e-01	ci right 5.034497e-01	k: 4936	n:10000
KS ci ratio: 9.379027e-02	ci left: 1.416816e-01	ci right 1.557237e-01	k: 1486	n:10000
INTS10   10000 perm   2 sec   (6204 perm/sec)   p_kst 1.486000e-01   p_cons 4.936000e-01   p_joint 9.107000e-01

Outputting figure to mutsig2_images.part000000000086/INTS10.2_2201_10000_0.1486_0.4936_0.9107.png
                gene_name: INTS10
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 78 percent done.
INTS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.415012e-02	ci left: 1.707441e-01	ci right 1.858438e-01	k: 1782	n:10000
Cons ci ratio: 1.389664e-01	ci left: 6.855690e-02	ci right 7.889307e-02	k: 736	n:10000
KS ci ratio: 5.238060e-02	ci left: 3.494907e-01	ci right 3.683915e-01	k: 3589	n:10000
INTS12   10000 perm   2 sec   (6459 perm/sec)   p_kst 3.589000e-01   p_cons 7.360000e-02   p_joint 1.782000e-01

Joint ci ratio: 4.972044e-02	ci left: 2.311697e-01	ci right 2.430069e-01	k: 4741	n:20000
Cons ci ratio: 1.040601e-01	ci left: 6.279246e-02	ci right 6.973429e-02	k: 1324	n:20000
KS ci ratio: 3.690616e-02	ci left: 3.539409e-01	ci right 3.672996e-01	k: 7212	n:20000
INTS12   20000 perm   3 sec   (5761 perm/sec)   p_kst 3.606000e-01   p_cons 6.620000e-02   p_joint 2.370500e-01

Joint ci ratio: 4.305393e-02	ci left: 2.118173e-01	ci right 2.211710e-01	k: 6494	n:30000
Cons ci ratio: 8.536850e-02	ci left: 6.285657e-02	ci right 6.849457e-02	k: 1969	n:30000
KS ci ratio: 3.021994e-02	ci left: 3.538679e-01	ci right 3.647594e-01	k: 10779	n:30000
INTS12   30000 perm   5 sec   (5499 perm/sec)   p_kst 3.593000e-01   p_cons 6.563333e-02   p_joint 2.164667e-01

Outputting figure to mutsig2_images.part000000000086/INTS12.2_1413_30000_0.3593_0.065633_0.21647.png
                gene_name: INTS12
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 79 percent done.
INTS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.327861e-02	ci left: 5.713575e-01	ci right 5.907953e-01	k: 5811	n:10000
Cons ci ratio: 2.752138e-02	ci left: 6.604841e-01	ci right 6.790169e-01	k: 6698	n:10000
KS ci ratio: 4.368164e-02	ci left: 4.362244e-01	ci right 4.558070e-01	k: 4460	n:10000
INTS9   10000 perm   2 sec   (6225 perm/sec)   p_kst 4.460000e-01   p_cons 6.698000e-01   p_joint 5.811000e-01

Outputting figure to mutsig2_images.part000000000086/INTS9.2_2045_10000_0.446_0.6698_0.5811.png
                gene_name: INTS9
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 81 percent done.
IPMK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.808866e-02	ci left: 3.037185e-01	ci right 3.219906e-01	k: 3128	n:10000
KS ci ratio: 2.161767e-02	ci left: 7.583849e-01	ci right 7.750594e-01	k: 7668	n:10000
IPMK   10000 perm   2 sec   (6548 perm/sec)   p_kst 7.668000e-01   p_cons 3.128000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IPMK.2_1275_10000_0.7668_0.3128_1.png
                gene_name: IPMK
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
IPPK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.385488e-02	ci left: 8.826795e-01	ci right 8.950929e-01	k: 8890	n:10000
KS ci ratio: 4.319882e-02	ci left: 4.417117e-01	ci right 4.613165e-01	k: 4515	n:10000
IPPK   10000 perm   2 sec   (6483 perm/sec)   p_kst 4.515000e-01   p_cons 8.890000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IPPK.2_1528_10000_0.4515_0.889_1.png
                gene_name: IPPK
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
IQCF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.185929e-02	ci left: 7.543371e-01	ci right 7.711095e-01	k: 7628	n:10000
Cons ci ratio: 2.607707e-02	ci left: 6.840560e-01	ci right 7.022314e-01	k: 6932	n:10000
KS ci ratio: 2.438996e-02	ci left: 7.119950e-01	ci right 7.296762e-01	k: 7209	n:10000
IQCF2   10000 perm   1 sec   (7095 perm/sec)   p_kst 7.209000e-01   p_cons 6.932000e-01   p_joint 7.628000e-01

Outputting figure to mutsig2_images.part000000000086/IQCF2.2_507_10000_0.7209_0.6932_0.7628.png
                gene_name: IQCF2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 85 percent done.
IQCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.428763e-01	ci left: 6.497832e-02	ci right 7.507390e-02	k: 699	n:10000
Cons ci ratio: 6.881274e-02	ci left: 2.364969e-01	ci right 2.534520e-01	k: 2449	n:10000
KS ci ratio: 1.042345e-01	ci left: 1.174050e-01	ci right 1.304149e-01	k: 1238	n:10000
IQCK   10000 perm   1 sec   (6880 perm/sec)   p_kst 1.238000e-01   p_cons 2.449000e-01   p_joint 6.990000e-02

Joint ci ratio: 5.651594e-02	ci left: 1.883911e-01	ci right 1.993980e-01	k: 3877	n:20000
Cons ci ratio: 4.846843e-02	ci left: 2.404401e-01	ci right 2.524337e-01	k: 4928	n:20000
KS ci ratio: 7.394489e-02	ci left: 1.186258e-01	ci right 1.277841e-01	k: 2463	n:20000
IQCK   20000 perm   3 sec   (6078 perm/sec)   p_kst 1.231500e-01   p_cons 2.464000e-01   p_joint 1.938500e-01

Outputting figure to mutsig2_images.part000000000086/IQCK.2_900_20000_0.12315_0.2464_0.19385.png
                gene_name: IQCK
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 87 percent done.
IQSEC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.534673e-02	ci left: 1.667136e-01	ci right 1.816767e-01	k: 1741	n:10000
KS ci ratio: 5.254030e-02	ci left: 3.480992e-01	ci right 3.669838e-01	k: 3575	n:10000
IQSEC3   10000 perm   2 sec   (5673 perm/sec)   p_kst 3.575000e-01   p_cons 1.741000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/IQSEC3.2_3684_10000_0.3575_0.1741_1.png
                gene_name: IQSEC3
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
IRAK1BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.668181e-02	ci left: 8.394879e-01	ci right 8.537096e-01	k: 8467	n:10000
Cons ci ratio: 2.952506e-02	ci left: 6.284917e-01	ci right 6.474279e-01	k: 6380	n:10000
KS ci ratio: 3.103856e-02	ci left: 6.049788e-01	ci right 6.241544e-01	k: 6146	n:10000
IRAK1BP1   10000 perm   1 sec   (6860 perm/sec)   p_kst 6.146000e-01   p_cons 6.380000e-01   p_joint 8.467000e-01

Outputting figure to mutsig2_images.part000000000086/IRAK1BP1.2_799_10000_0.6146_0.638_0.8467.png
                gene_name: IRAK1BP1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 90 percent done.
IRF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
Cons ci ratio: 2.138699e-01	ci left: 2.901644e-02	ci right 3.605933e-02	k: 324	n:10000
KS ci ratio: 1.459254e-01	ci left: 6.236946e-02	ci right 7.228440e-02	k: 672	n:10000
IRF3   10000 perm   1 sec   (6757 perm/sec)   p_kst 6.720000e-02   p_cons 3.240000e-02   p_joint 2.130000e-02

Joint ci ratio: 2.334606e-01	ci left: 1.227629e-02	ci right 1.556726e-02	k: 277	n:20000
Cons ci ratio: 1.513527e-01	ci left: 2.998929e-02	ci right 3.494786e-02	k: 648	n:20000
KS ci ratio: 1.039761e-01	ci left: 6.289002e-02	ci right 6.983670e-02	k: 1326	n:20000
IRF3   20000 perm   3 sec   (6008 perm/sec)   p_kst 6.630000e-02   p_cons 3.240000e-02   p_joint 1.385000e-02

Joint ci ratio: 1.677961e-01	ci left: 1.636590e-02	ci right 1.939517e-02	k: 535	n:30000
Cons ci ratio: 1.233510e-01	ci left: 3.055447e-02	ci right 3.460338e-02	k: 976	n:30000
KS ci ratio: 8.479409e-02	ci left: 6.367335e-02	ci right 6.934429e-02	k: 1994	n:30000
IRF3   30000 perm   5 sec   (5711 perm/sec)   p_kst 6.646667e-02   p_cons 3.253333e-02   p_joint 1.783333e-02

Joint ci ratio: 1.608806e-01	ci left: 1.344740e-02	ci right 1.582383e-02	k: 584	n:40000
Cons ci ratio: 1.060565e-01	ci left: 3.127086e-02	ci right 3.479735e-02	k: 1320	n:40000
KS ci ratio: 7.346369e-02	ci left: 6.400365e-02	ci right 6.890952e-02	k: 2657	n:40000
IRF3   40000 perm   7 sec   (5527 perm/sec)   p_kst 6.642500e-02   p_cons 3.300000e-02   p_joint 1.460000e-02

Joint ci ratio: 1.546914e-01	ci left: 1.169840e-02	ci right 1.367878e-02	k: 633	n:50000
Cons ci ratio: 9.401688e-02	ci left: 3.201811e-02	ci right 3.519634e-02	k: 1679	n:50000
KS ci ratio: 6.575577e-02	ci left: 6.417377e-02	ci right 6.855674e-02	k: 3317	n:50000
IRF3   50000 perm   9 sec   (5375 perm/sec)   p_kst 6.634000e-02   p_cons 3.358000e-02   p_joint 1.266000e-02

Joint ci ratio: 1.393516e-01	ci left: 1.210892e-02	ci right 1.393864e-02	k: 780	n:60000
Cons ci ratio: 8.575941e-02	ci left: 3.220505e-02	ci right 3.510695e-02	k: 2018	n:60000
KS ci ratio: 5.995890e-02	ci left: 6.450262e-02	ci right 6.850610e-02	k: 3989	n:60000
IRF3   60000 perm   11 sec   (5240 perm/sec)   p_kst 6.648333e-02   p_cons 3.363333e-02   p_joint 1.300000e-02

Joint ci ratio: 9.125104e-02	ci left: 2.451239e-02	ci right 2.687001e-02	k: 1797	n:70000
Cons ci ratio: 7.916342e-02	ci left: 3.250151e-02	ci right 3.519445e-02	k: 2368	n:70000
KS ci ratio: 5.565222e-02	ci left: 6.434081e-02	ci right 6.803810e-02	k: 4632	n:70000
IRF3   70000 perm   14 sec   (5120 perm/sec)   p_kst 6.617143e-02   p_cons 3.382857e-02   p_joint 2.567143e-02

Outputting figure to mutsig2_images.part000000000086/IRF3.2_1312_70000_0.066171_0.033829_0.025671.png
                gene_name: IRF3
               theta_stop: 0.091 
                    nperm: 70000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 91 percent done.
IRF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.452654e-02	ci left: 2.085598e-01	ci right 2.248056e-01	k: 2166	n:10000
Cons ci ratio: 4.767244e-02	ci left: 3.936645e-01	ci right 4.129918e-01	k: 4033	n:10000
KS ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
IRF6   10000 perm   2 sec   (6523 perm/sec)   p_kst 4.150000e-02   p_cons 4.033000e-01   p_joint 2.166000e-01

Joint ci ratio: 6.254725e-02	ci left: 1.589912e-01	ci right 1.693067e-01	k: 3282	n:20000
Cons ci ratio: 3.368821e-02	ci left: 3.968398e-01	ci right 4.104882e-01	k: 8073	n:20000
KS ci ratio: 1.322148e-01	ci left: 3.931020e-02	ci right 4.492391e-02	k: 841	n:20000
IRF6   20000 perm   3 sec   (5788 perm/sec)   p_kst 4.205000e-02   p_cons 4.036500e-01   p_joint 1.641000e-01

Joint ci ratio: 6.805948e-02	ci left: 9.616785e-02	ci right 1.029766e-01	k: 2986	n:30000
Cons ci ratio: 2.743210e-02	ci left: 3.994046e-01	ci right 4.105471e-01	k: 12149	n:30000
KS ci ratio: 1.092239e-01	ci left: 3.891389e-02	ci right 4.344218e-02	k: 1234	n:30000
IRF6   30000 perm   5 sec   (5501 perm/sec)   p_kst 4.113333e-02   p_cons 4.049667e-01   p_joint 9.953333e-02

Joint ci ratio: 5.407352e-02	ci left: 1.129761e-01	ci right 1.192797e-01	k: 4644	n:40000
Cons ci ratio: 2.370641e-02	ci left: 4.011819e-01	ci right 4.108317e-01	k: 16240	n:40000
KS ci ratio: 9.398742e-02	ci left: 3.971295e-02	ci right 4.365394e-02	k: 1666	n:40000
IRF6   40000 perm   8 sec   (5314 perm/sec)   p_kst 4.165000e-02   p_cons 4.060000e-01   p_joint 1.161000e-01

Outputting figure to mutsig2_images.part000000000086/IRF6.2_1432_40000_0.04165_0.406_0.1161.png
                gene_name: IRF6
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 93 percent done.
IRGC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.223299e-02	ci left: 3.507829e-01	ci right 3.696986e-01	k: 3602	n:10000
Cons ci ratio: 3.405012e-02	ci left: 5.601272e-01	ci right 5.796320e-01	k: 5699	n:10000
KS ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
IRGC   10000 perm   1 sec   (6713 perm/sec)   p_kst 1.050000e-01   p_cons 5.699000e-01   p_joint 3.602000e-01

Joint ci ratio: 2.583732e-02	ci left: 5.281079e-01	ci right 5.419820e-01	k: 10701	n:20000
Cons ci ratio: 2.279153e-02	ci left: 5.897624e-01	ci right 6.034095e-01	k: 11932	n:20000
KS ci ratio: 8.026407e-02	ci left: 1.022572e-01	ci right 1.108575e-01	k: 2130	n:20000
IRGC   20000 perm   3 sec   (5967 perm/sec)   p_kst 1.065000e-01   p_cons 5.966000e-01   p_joint 5.350500e-01

Outputting figure to mutsig2_images.part000000000086/IRGC.2_1396_20000_0.1065_0.5966_0.53505.png
                gene_name: IRGC
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.54 

Current progress: 94 percent done.
IRGQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.414688e-01	ci left: 6.623521e-02	ci right 7.641622e-02	k: 712	n:10000
Cons ci ratio: 2.155899e-01	ci left: 2.854258e-02	ci right 3.553353e-02	k: 319	n:10000
KS ci ratio: 3.809659e-02	ci left: 5.043512e-01	ci right 5.240405e-01	k: 5142	n:10000
IRGQ   10000 perm   2 sec   (6260 perm/sec)   p_kst 5.142000e-01   p_cons 3.190000e-02   p_joint 7.120000e-02

Joint ci ratio: 1.105960e-01	ci left: 5.582245e-02	ci right 6.240645e-02	k: 1181	n:20000
Cons ci ratio: 1.843791e-01	ci left: 2.005956e-02	ci right 2.418100e-02	k: 441	n:20000
KS ci ratio: 2.680850e-02	ci left: 5.096973e-01	ci right 5.235978e-01	k: 10333	n:20000
IRGQ   20000 perm   4 sec   (5576 perm/sec)   p_kst 5.166500e-01   p_cons 2.205000e-02   p_joint 5.905000e-02

Joint ci ratio: 9.813429e-02	ci left: 4.801652e-02	ci right 5.300432e-02	k: 1514	n:30000
Cons ci ratio: 1.491714e-01	ci left: 2.081941e-02	ci right 2.420727e-02	k: 674	n:30000
KS ci ratio: 2.182612e-02	ci left: 5.124276e-01	ci right 5.237689e-01	k: 15543	n:30000
IRGQ   30000 perm   6 sec   (5316 perm/sec)   p_kst 5.181000e-01   p_cons 2.246667e-02   p_joint 5.046667e-02

Joint ci ratio: 8.902986e-02	ci left: 4.416335e-02	ci right 4.830285e-02	k: 1848	n:40000
Cons ci ratio: 1.288940e-01	ci left: 2.114153e-02	ci right 2.407834e-02	k: 903	n:40000
KS ci ratio: 1.890693e-02	ci left: 5.130646e-01	ci right 5.228828e-01	k: 20719	n:40000
IRGQ   40000 perm   8 sec   (5139 perm/sec)   p_kst 5.179750e-01   p_cons 2.257500e-02   p_joint 4.620000e-02

Joint ci ratio: 9.853781e-02	ci left: 2.916622e-02	ci right 3.220859e-02	k: 1533	n:50000
Cons ci ratio: 9.648066e-02	ci left: 3.041594e-02	ci right 3.351871e-02	k: 1597	n:50000
KS ci ratio: 1.689863e-02	ci left: 5.139494e-01	ci right 5.227285e-01	k: 25917	n:50000
IRGQ   50000 perm   10 sec   (4998 perm/sec)   p_kst 5.183400e-01   p_cons 3.194000e-02   p_joint 3.066000e-02

Outputting figure to mutsig2_images.part000000000086/IRGQ.2_1880_50000_0.51834_0.03194_0.03066.png
                gene_name: IRGQ
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 96 percent done.
IRX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.402797e-02	ci left: 4.323342e-01	ci right 4.518996e-01	k: 4421	n:10000
Cons ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
KS ci ratio: 3.656271e-02	ci left: 5.248649e-01	ci right 5.445149e-01	k: 5347	n:10000
IRX1   10000 perm   1 sec   (6706 perm/sec)   p_kst 5.347000e-01   p_cons 4.100000e-02   p_joint 4.421000e-01

Joint ci ratio: 3.108474e-02	ci left: 4.359995e-01	ci right 4.498171e-01	k: 8858	n:20000
Cons ci ratio: 1.266618e-01	ci left: 4.279850e-02	ci right 4.863449e-02	k: 913	n:20000
KS ci ratio: 2.597785e-02	ci left: 5.254057e-01	ci right 5.392849e-01	k: 10647	n:20000
IRX1   20000 perm   3 sec   (5925 perm/sec)   p_kst 5.323500e-01   p_cons 4.565000e-02   p_joint 4.429000e-01

Joint ci ratio: 2.003870e-02	ci left: 5.548947e-01	ci right 5.661602e-01	k: 16816	n:30000
Cons ci ratio: 1.000261e-01	ci left: 4.625897e-02	ci right 5.116224e-02	k: 1460	n:30000
KS ci ratio: 2.116804e-02	ci left: 5.277017e-01	ci right 5.390252e-01	k: 16001	n:30000
IRX1   30000 perm   6 sec   (5441 perm/sec)   p_kst 5.333667e-01   p_cons 4.866667e-02   p_joint 5.605333e-01

Joint ci ratio: 2.153794e-02	ci left: 4.480879e-01	ci right 4.578690e-01	k: 18119	n:40000
Cons ci ratio: 8.735861e-02	ci left: 4.582759e-02	ci right 5.003836e-02	k: 1916	n:40000
KS ci ratio: 1.832828e-02	ci left: 5.285713e-01	ci right 5.383738e-01	k: 21339	n:40000
IRX1   40000 perm   8 sec   (5311 perm/sec)   p_kst 5.334750e-01   p_cons 4.790000e-02   p_joint 4.529750e-01

Outputting figure to mutsig2_images.part000000000086/IRX1.2_1459_40000_0.53348_0.0479_0.45298.png
                gene_name: IRX1
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 97 percent done.
IRX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.068598e-01	ci left: 1.122272e-01	ci right 1.249959e-01	k: 1185	n:10000
Cons ci ratio: 4.782131e-02	ci left: 3.921708e-01	ci right 4.114864e-01	k: 4018	n:10000
KS ci ratio: 1.699685e-01	ci left: 4.619368e-02	ci right 5.487054e-02	k: 504	n:10000
IRX2   10000 perm   2 sec   (6524 perm/sec)   p_kst 5.040000e-02   p_cons 4.018000e-01   p_joint 1.185000e-01

Joint ci ratio: 6.297228e-02	ci left: 1.571648e-01	ci right 1.674336e-01	k: 3245	n:20000
Cons ci ratio: 3.367772e-02	ci left: 3.969893e-01	ci right 4.106386e-01	k: 8076	n:20000
KS ci ratio: 1.195665e-01	ci left: 4.794292e-02	ci right 5.408845e-02	k: 1019	n:20000
IRX2   20000 perm   3 sec   (5778 perm/sec)   p_kst 5.095000e-02   p_cons 4.038000e-01   p_joint 1.622500e-01

Joint ci ratio: 5.324281e-02	ci left: 1.489435e-01	ci right 1.571238e-01	k: 4590	n:30000
Cons ci ratio: 2.752719e-02	ci left: 3.977418e-01	ci right 4.088769e-01	k: 12099	n:30000
KS ci ratio: 9.729176e-02	ci left: 4.883050e-02	ci right 5.385684e-02	k: 1539	n:30000
IRX2   30000 perm   5 sec   (5461 perm/sec)   p_kst 5.130000e-02   p_cons 4.033000e-01   p_joint 1.530000e-01

Outputting figure to mutsig2_images.part000000000086/IRX2.2_1432_30000_0.0513_0.4033_0.153.png
                gene_name: IRX2
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 99 percent done.
ISM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.305884e-02	ci left: 3.436272e-01	ci right 3.624585e-01	k: 3530	n:10000
KS ci ratio: 3.709500e-02	ci left: 5.176582e-01	ci right 5.373258e-01	k: 5275	n:10000
ISM1   10000 perm   2 sec   (6569 perm/sec)   p_kst 5.275000e-01   p_cons 3.530000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000086/ISM1.2_1419_10000_0.5275_0.353_1.png
                gene_name: ISM1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000086
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 86 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1554>
Subject: Job 9893979: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1554>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000087> was used as the working directory.
Started at Sat Oct  6 00:13:48 2012
Results reported at Sat Oct  6 00:28:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000087.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000087.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 87  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000087.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1002.50 sec.
    Max Memory :      3615 MB
    Max Swap   :      5982 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
87
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 87
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 87: processing genes 7754 - 7843
Calculating significance of each gene.
Using projection method.
7754	ISOC2	1
7755	ISPD	1.150810e-01
7756	ISX	1
7757	ISY1	1
7758	ISYNA1	1
7759	ITCH	6.072044e-01
7760	ITFG1	7.728830e-01
7761	ITFG2	7.795952e-01
7762	ITFG3	9.697321e-01
7763	ITGA1	9.116448e-01
7764	ITGA10	3.808779e-01
7765	ITGA11	9.579650e-01
7766	ITGA2	1.779974e-01
7767	ITGA2B	8.685888e-01
7768	ITGA3	9.235012e-01
7769	ITGA4	5.143717e-01
7770	ITGA5	3.117013e-01
7771	ITGA6	8.045933e-01
7772	ITGA7	5.167931e-01
7773	ITGA8	1.332808e-01
7774	ITGA9	5.603547e-01
7775	ITGAD	6.246059e-01
7776	ITGAE	8.337404e-01
7777	ITGAL	6.068959e-01
7778	ITGAM	4.382759e-01
7779	ITGAV	6.988393e-01
7780	ITGAX	8.709030e-01
7781	ITGB1	3.034059e-01
7782	ITGB1BP1	1
7783	ITGB1BP2	2.405886e-01
7784	ITGB1BP3	5.617965e-01
7785	ITGB2	5.663221e-01
7786	ITGB3	4.347937e-01
7787	ITGB3BP	6.934831e-02
7788	ITGB4	9.952869e-01
7789	ITGB5	5.747785e-01
7790	ITGB6	5.444448e-01
7791	ITGB7	6.675272e-01
7792	ITGB8	5.122426e-01
7793	ITGBL1	3.032502e-02
7794	ITIH1	4.238706e-02
7795	ITIH2	1.384515e-02
7796	ITIH3	5.010458e-01
7797	ITIH4	7.725243e-01
7798	ITIH5	4.384577e-02
7799	ITIH5L	5.856725e-02
7800	ITK	8.514835e-04
7801	ITLN1	7.017189e-01
7802	ITLN2	2.673867e-01
7803	ITM2A	4.575052e-01
7804	ITM2B	6.371750e-01
7805	ITM2C	1
7806	ITPA	1.425032e-01
7807	ITPK1	7.698990e-01
7808	ITPKA	1
7809	ITPKB	9.522558e-01
7810	ITPKC	9.698158e-01
7811	ITPR1	5.580402e-01
7812	ITPR2	9.198583e-01
7813	ITPR3	8.851985e-01
7814	ITPRIP	5.132565e-01
7815	ITPRIPL1	7.558344e-01
7816	ITPRIPL2	8.544350e-01
7817	ITSN1	6.194169e-01
7818	ITSN2	4.538682e-01
7819	IVD	1
7820	IVL	1.595593e-02
7821	IVNS1ABP	5.394210e-01
7822	IWS1	9.658951e-01
7823	IYD	4.988682e-02
7824	IZUMO1	3.300371e-01
7825	JAG1	4.547304e-01
7826	JAG2	1
7827	JAGN1	1
7828	JAK1	8.753640e-01
7829	JAK2	1.948159e-01
7830	JAK3	2.987655e-01
7831	JAKMIP1	6.376016e-02
7832	JAKMIP2	1.243451e-04
7833	JAKMIP3	4.867091e-01
7834	JAM2	1
7835	JAM3	3.996917e-01
7836	JARID2	5.881649e-02
7837	JAZF1	6.687718e-01
7838	JDP2	1
7839	JHDM1D	9.921793e-01
7840	JKAMP	1.351921e-01
7841	JMJD1C	7.138461e-01
7842	JMJD4	1
7843	JMJD5	1
Done

Running MutSig 2:
Scatter job 87: processing genes 7754 - 7843
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ITPR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.865692e-02	ci left: 3.839072e-01	ci right 4.031548e-01	k: 3935	n:10000
Cons ci ratio: 7.160178e-02	ci left: 2.222750e-01	ci right 2.388823e-01	k: 2305	n:10000
KS ci ratio: 4.918069e-02	ci left: 3.788311e-01	ci right 3.980340e-01	k: 3884	n:10000
ITPR1   10000 perm   4 sec   (2359 perm/sec)   p_kst 3.884000e-01   p_cons 2.305000e-01   p_joint 3.935000e-01

Outputting figure to mutsig2_images.part000000000087/ITPR1.19_8517_10000_0.3884_0.2305_0.3935.png
                gene_name: ITPR1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 2 percent done.
ITPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.573248e-02	ci left: 2.032352e-01	ci right 2.193333e-01	k: 2112	n:10000
Cons ci ratio: 4.142864e-02	ci left: 4.624745e-01	ci right 4.821416e-01	k: 4723	n:10000
KS ci ratio: 1.181872e-01	ci left: 9.321372e-02	ci right 1.050210e-01	k: 990	n:10000
ITPR2   10000 perm   4 sec   (2805 perm/sec)   p_kst 9.900000e-02   p_cons 4.723000e-01   p_joint 2.112000e-01

Joint ci ratio: 5.977956e-02	ci left: 1.716339e-01	ci right 1.822602e-01	k: 3538	n:20000
Cons ci ratio: 2.911236e-02	ci left: 4.685078e-01	ci right 4.823993e-01	k: 9509	n:20000
KS ci ratio: 8.310798e-02	ci left: 9.592472e-02	ci right 1.042920e-01	k: 2001	n:20000
ITPR2   20000 perm   8 sec   (2615 perm/sec)   p_kst 1.000500e-01   p_cons 4.754500e-01   p_joint 1.769000e-01

Outputting figure to mutsig2_images.part000000000087/ITPR2.18_8334_20000_0.10005_0.47545_0.1769.png
                gene_name: ITPR2
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 3 percent done.
JAKMIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.483523e-02	ci left: 2.071791e-01	ci right 2.233870e-01	k: 2152	n:10000
Cons ci ratio: 5.072644e-02	ci left: 3.643054e-01	ci right 3.833682e-01	k: 3738	n:10000
KS ci ratio: 1.006938e-01	ci left: 1.249344e-01	ci right 1.382810e-01	k: 1315	n:10000
JAKMIP2   10000 perm   2 sec   (4357 perm/sec)   p_kst 1.315000e-01   p_cons 3.738000e-01   p_joint 2.152000e-01

Joint ci ratio: 5.546248e-02	ci left: 1.942774e-01	ci right 2.054100e-01	k: 3996	n:20000
Cons ci ratio: 3.763756e-02	ci left: 3.449797e-01	ci right 3.582635e-01	k: 7032	n:20000
KS ci ratio: 7.242749e-02	ci left: 1.231038e-01	ci right 1.324047e-01	k: 2554	n:20000
JAKMIP2   20000 perm   5 sec   (3955 perm/sec)   p_kst 1.277000e-01   p_cons 3.516000e-01   p_joint 1.998000e-01

Outputting figure to mutsig2_images.part000000000087/JAKMIP2.17_2513_20000_0.1277_0.3516_0.1998.png
                gene_name: JAKMIP2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 5 percent done.
ITIH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.573961e-01	ci left: 5.378678e-02	ci right 6.307254e-02	k: 583	n:10000
Cons ci ratio: 5.409676e-02	ci left: 3.348846e-01	ci right 3.536063e-01	k: 3442	n:10000
KS ci ratio: 2.052170e-01	ci left: 3.157898e-02	ci right 3.889501e-02	k: 351	n:10000
ITIH1   10000 perm   2 sec   (4432 perm/sec)   p_kst 3.510000e-02   p_cons 3.442000e-01   p_joint 5.830000e-02

Joint ci ratio: 7.472519e-02	ci left: 1.164121e-01	ci right 1.254984e-01	k: 2418	n:20000
Cons ci ratio: 3.891364e-02	ci left: 3.300003e-01	ci right 3.431472e-01	k: 6731	n:20000
KS ci ratio: 1.396534e-01	ci left: 3.524760e-02	ci right 4.058782e-02	k: 757	n:20000
ITIH1   20000 perm   5 sec   (4018 perm/sec)   p_kst 3.785000e-02   p_cons 3.365500e-01   p_joint 1.209000e-01

Joint ci ratio: 6.974443e-02	ci left: 9.193435e-02	ci right 9.861093e-02	k: 2857	n:30000
Cons ci ratio: 3.187986e-02	ci left: 3.297249e-01	ci right 3.404403e-01	k: 10052	n:30000
KS ci ratio: 1.155139e-01	ci left: 3.482746e-02	ci right 3.912947e-02	k: 1108	n:30000
ITIH1   30000 perm   8 sec   (3851 perm/sec)   p_kst 3.693333e-02   p_cons 3.350667e-01   p_joint 9.523333e-02

Joint ci ratio: 6.304778e-02	ci left: 8.533981e-02	ci right 9.092015e-02	k: 3524	n:40000
Cons ci ratio: 2.766307e-02	ci left: 3.295770e-01	ci right 3.388471e-01	k: 13368	n:40000
KS ci ratio: 9.960780e-02	ci left: 3.541533e-02	ci right 3.915223e-02	k: 1490	n:40000
ITIH1   40000 perm   11 sec   (3738 perm/sec)   p_kst 3.725000e-02   p_cons 3.342000e-01   p_joint 8.810000e-02

Outputting figure to mutsig2_images.part000000000087/ITIH1.13_2824_40000_0.03725_0.3342_0.0881.png
                gene_name: ITIH1
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.091 

Current progress: 6 percent done.
ITIH5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.138680e-02	ci left: 5.996565e-01	ci right 6.188798e-01	k: 6093	n:10000
Cons ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
KS ci ratio: 1.493392e-02	ci left: 8.666216e-01	ci right 8.797602e-01	k: 8733	n:10000
ITIH5   10000 perm   2 sec   (4215 perm/sec)   p_kst 8.733000e-01   p_cons 3.267000e-01   p_joint 6.093000e-01

Outputting figure to mutsig2_images.part000000000087/ITIH5.12_3022_10000_0.8733_0.3267_0.6093.png
                gene_name: ITIH5
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 8 percent done.
ITPR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.890802e-02	ci left: 6.382456e-01	ci right 6.570684e-01	k: 6477	n:10000
KS ci ratio: 1.203653e-02	ci left: 9.082308e-01	ci right 9.193268e-01	k: 9139	n:10000
ITPR3   10000 perm   4 sec   (2845 perm/sec)   p_kst 9.139000e-01   p_cons 6.477000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITPR3.12_8248_10000_0.9139_0.6477_1.png
                gene_name: ITPR3
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
ITSN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.803680e-02	ci left: 8.177134e-01	ci right 8.326966e-01	k: 8253	n:10000
Cons ci ratio: 3.792162e-02	ci left: 5.066519e-01	ci right 5.263385e-01	k: 5165	n:10000
KS ci ratio: 3.040012e-02	ci left: 6.148232e-01	ci right 6.339043e-01	k: 6244	n:10000
ITSN1   10000 perm   3 sec   (3519 perm/sec)   p_kst 6.244000e-01   p_cons 5.165000e-01   p_joint 8.253000e-01

Outputting figure to mutsig2_images.part000000000087/ITSN1.12_5328_10000_0.6244_0.5165_0.8253.png
                gene_name: ITSN1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 11 percent done.
ITK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.814236e-02	ci left: 5.037510e-01	ci right 5.234410e-01	k: 5136	n:10000
Cons ci ratio: 3.938267e-02	ci left: 4.877522e-01	ci right 5.074492e-01	k: 4976	n:10000
KS ci ratio: 5.108585e-02	ci left: 3.610234e-01	ci right 3.800520e-01	k: 3705	n:10000
ITK   10000 perm   2 sec   (4228 perm/sec)   p_kst 3.705000e-01   p_cons 4.976000e-01   p_joint 5.136000e-01

Outputting figure to mutsig2_images.part000000000087/ITK.11_1931_10000_0.3705_0.4976_0.5136.png
                gene_name: ITK
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 12 percent done.
JARID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.749029e-02	ci left: 6.609875e-01	ci right 6.795132e-01	k: 6703	n:10000
Cons ci ratio: 2.552671e-02	ci left: 6.931293e-01	ci right 7.111528e-01	k: 7022	n:10000
KS ci ratio: 4.625609e-02	ci left: 4.082083e-01	ci right 4.276396e-01	k: 4179	n:10000
JARID2   10000 perm   2 sec   (4079 perm/sec)   p_kst 4.179000e-01   p_cons 7.022000e-01   p_joint 6.703000e-01

Outputting figure to mutsig2_images.part000000000087/JARID2.11_3813_10000_0.4179_0.7022_0.6703.png
                gene_name: JARID2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 14 percent done.
ITIH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.788599e-02	ci left: 1.313941e-01	ci right 1.450174e-01	k: 1381	n:10000
Cons ci ratio: 1.002557e-01	ci left: 1.259128e-01	ci right 1.393020e-01	k: 1325	n:10000
KS ci ratio: 8.561466e-02	ci left: 1.658291e-01	ci right 1.807618e-01	k: 1732	n:10000
ITIH2   10000 perm   2 sec   (4246 perm/sec)   p_kst 1.732000e-01   p_cons 1.325000e-01   p_joint 1.381000e-01

Joint ci ratio: 5.767167e-02	ci left: 1.822102e-01	ci right 1.930807e-01	k: 3752	n:20000
Cons ci ratio: 7.034327e-02	ci left: 1.296521e-01	ci right 1.391545e-01	k: 2687	n:20000
KS ci ratio: 6.120284e-02	ci left: 1.649655e-01	ci right 1.754306e-01	k: 3403	n:20000
ITIH2   20000 perm   5 sec   (3841 perm/sec)   p_kst 1.701500e-01   p_cons 1.343500e-01   p_joint 1.876000e-01

Outputting figure to mutsig2_images.part000000000087/ITIH2.10_2925_20000_0.17015_0.13435_0.1876.png
                gene_name: ITIH2
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 15 percent done.
ITSN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
Cons ci ratio: 4.694732e-02	ci left: 4.010349e-01	ci right 4.204171e-01	k: 4107	n:10000
KS ci ratio: 1.202867e-01	ci left: 9.019709e-02	ci right 1.018395e-01	k: 959	n:10000
ITSN2   10000 perm   3 sec   (3139 perm/sec)   p_kst 9.590000e-02   p_cons 4.107000e-01   p_joint 1.789000e-01

Joint ci ratio: 6.369996e-02	ci left: 1.541050e-01	ci right 1.642943e-01	k: 3183	n:20000
Cons ci ratio: 3.400512e-02	ci left: 3.923530e-01	ci right 4.059764e-01	k: 7983	n:20000
KS ci ratio: 8.498378e-02	ci left: 9.204927e-02	ci right 1.002686e-01	k: 1922	n:20000
ITSN2   20000 perm   7 sec   (2963 perm/sec)   p_kst 9.610000e-02   p_cons 3.991500e-01   p_joint 1.591500e-01

Outputting figure to mutsig2_images.part000000000087/ITSN2.10_5301_20000_0.0961_0.39915_0.15915.png
                gene_name: ITSN2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 17 percent done.
JAKMIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.716754e-02	ci left: 6.662236e-01	ci right 6.846741e-01	k: 6755	n:10000
Cons ci ratio: 7.228335e-03	ci left: 9.635202e-01	ci right 9.706043e-01	k: 9672	n:10000
KS ci ratio: 3.657006e-02	ci left: 5.247648e-01	ci right 5.444151e-01	k: 5346	n:10000
JAKMIP1   10000 perm   2 sec   (4460 perm/sec)   p_kst 5.346000e-01   p_cons 9.672000e-01   p_joint 6.755000e-01

Outputting figure to mutsig2_images.part000000000087/JAKMIP1.10_2651_10000_0.5346_0.9672_0.6755.png
                gene_name: JAKMIP1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 18 percent done.
ITGB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.985756e-02	ci left: 7.877635e-01	ci right 8.036639e-01	k: 7958	n:10000
Cons ci ratio: 2.538644e-02	ci left: 6.954487e-01	ci right 7.134321e-01	k: 7045	n:10000
KS ci ratio: 2.414167e-02	ci left: 7.161338e-01	ci right 7.337350e-01	k: 7250	n:10000
ITGB3   10000 perm   2 sec   (4613 perm/sec)   p_kst 7.250000e-01   p_cons 7.045000e-01   p_joint 7.958000e-01

Outputting figure to mutsig2_images.part000000000087/ITGB3.9_2427_10000_0.725_0.7045_0.7958.png
                gene_name: ITGB3
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 20 percent done.
JAK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.353098e-01	ci left: 2.381734e-02	ci right 3.026216e-02	k: 269	n:10000
Cons ci ratio: 6.536699e-02	ci left: 2.557759e-01	ci right 2.731615e-01	k: 2644	n:10000
KS ci ratio: 2.458026e-01	ci left: 2.174701e-02	ci right 2.793403e-02	k: 247	n:10000
JAK2   10000 perm   3 sec   (3995 perm/sec)   p_kst 2.470000e-02   p_cons 2.644000e-01   p_joint 2.690000e-02

Joint ci ratio: 1.302097e-01	ci left: 4.052082e-02	ci right 4.621290e-02	k: 866	n:20000
Cons ci ratio: 4.652663e-02	ci left: 2.558166e-01	ci right 2.680527e-01	k: 5238	n:20000
KS ci ratio: 1.745358e-01	ci left: 2.244966e-02	ci right 2.679005e-02	k: 491	n:20000
JAK2   20000 perm   5 sec   (3671 perm/sec)   p_kst 2.455000e-02   p_cons 2.619000e-01   p_joint 4.330000e-02

Joint ci ratio: 1.218759e-01	ci left: 3.129835e-02	ci right 3.539267e-02	k: 999	n:30000
Cons ci ratio: 3.812531e-02	ci left: 2.555732e-01	ci right 2.655399e-01	k: 7816	n:30000
KS ci ratio: 1.391621e-01	ci left: 2.397097e-02	ci right 2.758833e-02	k: 772	n:30000
JAK2   30000 perm   8 sec   (3538 perm/sec)   p_kst 2.573333e-02   p_cons 2.605333e-01   p_joint 3.330000e-02

Joint ci ratio: 9.221223e-02	ci left: 4.122835e-02	ci right 4.523830e-02	k: 1728	n:40000
Cons ci ratio: 3.307690e-02	ci left: 2.555573e-01	ci right 2.641776e-01	k: 10394	n:40000
KS ci ratio: 1.190253e-01	ci left: 2.482656e-02	ci right 2.799270e-02	k: 1055	n:40000
JAK2   40000 perm   12 sec   (3451 perm/sec)   p_kst 2.637500e-02   p_cons 2.598500e-01   p_joint 4.320000e-02

Joint ci ratio: 7.256841e-02	ci left: 5.313552e-02	ci right 5.715632e-02	k: 2756	n:50000
Cons ci ratio: 2.941474e-02	ci left: 2.582293e-01	ci right 2.659584e-01	k: 13104	n:50000
KS ci ratio: 1.063770e-01	ci left: 2.503177e-02	ci right 2.786357e-02	k: 1321	n:50000
JAK2   50000 perm   15 sec   (3388 perm/sec)   p_kst 2.642000e-02   p_cons 2.620800e-01   p_joint 5.512000e-02

Joint ci ratio: 6.974416e-02	ci left: 4.826958e-02	ci right 5.177411e-02	k: 3000	n:60000
Cons ci ratio: 2.690056e-02	ci left: 2.578708e-01	ci right 2.649189e-01	k: 15683	n:60000
KS ci ratio: 9.715263e-02	ci left: 2.513180e-02	ci right 2.771429e-02	k: 1584	n:60000
JAK2   60000 perm   18 sec   (3322 perm/sec)   p_kst 2.640000e-02   p_cons 2.613833e-01   p_joint 5.000000e-02

Outputting figure to mutsig2_images.part000000000087/JAK2.9_3491_60000_0.0264_0.26138_0.05.png
                gene_name: JAK2
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.052 

Current progress: 21 percent done.
JMJD1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.622981e-02	ci left: 8.466204e-01	ci right 8.605729e-01	k: 8537	n:10000
Cons ci ratio: 6.005007e-02	ci left: 2.897392e-01	ci right 3.077782e-01	k: 2987	n:10000
KS ci ratio: 1.771079e-02	ci left: 8.230004e-01	ci right 8.378066e-01	k: 8305	n:10000
JMJD1C   10000 perm   3 sec   (3373 perm/sec)   p_kst 8.305000e-01   p_cons 2.987000e-01   p_joint 8.537000e-01

Outputting figure to mutsig2_images.part000000000087/JMJD1C.9_7727_10000_0.8305_0.2987_0.8537.png
                gene_name: JMJD1C
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 23 percent done.
ITGA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.041386e-01	ci left: 1.176005e-01	ci right 1.306194e-01	k: 1240	n:10000
Cons ci ratio: 3.526734e-02	ci left: 5.427904e-01	ci right 5.623789e-01	k: 5526	n:10000
KS ci ratio: 1.980390e-01	ci left: 3.395684e-02	ci right 4.151552e-02	k: 376	n:10000
ITGA4   10000 perm   2 sec   (4626 perm/sec)   p_kst 3.760000e-02   p_cons 5.526000e-01   p_joint 1.240000e-01

Joint ci ratio: 9.965990e-02	ci left: 6.821079e-02	ci right 7.541429e-02	k: 1435	n:20000
Cons ci ratio: 2.500248e-02	ci left: 5.444251e-01	ci right 5.582600e-01	k: 11027	n:20000
KS ci ratio: 1.396534e-01	ci left: 3.524760e-02	ci right 4.058782e-02	k: 757	n:20000
ITGA4   20000 perm   5 sec   (4180 perm/sec)   p_kst 3.785000e-02   p_cons 5.513500e-01   p_joint 7.175000e-02

Joint ci ratio: 8.249198e-02	ci left: 6.710517e-02	ci right 7.291177e-02	k: 2099	n:30000
Cons ci ratio: 2.013785e-02	ci left: 5.524583e-01	ci right 5.637304e-01	k: 16743	n:30000
KS ci ratio: 1.146578e-01	ci left: 3.534598e-02	ci right 3.967751e-02	k: 1124	n:30000
ITGA4   30000 perm   7 sec   (4000 perm/sec)   p_kst 3.746667e-02   p_cons 5.581000e-01   p_joint 6.996667e-02

Joint ci ratio: 7.103208e-02	ci left: 6.823140e-02	ci right 7.328113e-02	k: 2829	n:40000
Cons ci ratio: 1.743212e-02	ci left: 5.534420e-01	ci right 5.631996e-01	k: 22333	n:40000
KS ci ratio: 9.953848e-02	ci left: 3.546413e-02	ci right 3.920343e-02	k: 1492	n:40000
ITGA4   40000 perm   10 sec   (3882 perm/sec)   p_kst 3.730000e-02   p_cons 5.583250e-01   p_joint 7.072500e-02

Outputting figure to mutsig2_images.part000000000087/ITGA4.8_3211_40000_0.0373_0.55832_0.070725.png
                gene_name: ITGA4
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.073 

Current progress: 24 percent done.
ITGA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.420057e-01	ci left: 6.575174e-02	ci right 7.590000e-02	k: 707	n:10000
Cons ci ratio: 4.258492e-02	ci left: 4.487971e-01	ci right 4.684270e-01	k: 4586	n:10000
KS ci ratio: 1.938045e-01	ci left: 3.548103e-02	ci right 4.319029e-02	k: 392	n:10000
ITGA8   10000 perm   3 sec   (3868 perm/sec)   p_kst 3.920000e-02   p_cons 4.586000e-01   p_joint 7.070000e-02

Joint ci ratio: 9.741266e-02	ci left: 7.124000e-02	ci right 7.858416e-02	k: 1497	n:20000
Cons ci ratio: 2.924986e-02	ci left: 4.661598e-01	ci right 4.800480e-01	k: 9462	n:20000
KS ci ratio: 1.319696e-01	ci left: 3.945544e-02	ci right 4.507862e-02	k: 844	n:20000
ITGA8   20000 perm   6 sec   (3622 perm/sec)   p_kst 4.220000e-02   p_cons 4.731000e-01   p_joint 7.485000e-02

Joint ci ratio: 6.553002e-02	ci left: 1.030637e-01	ci right 1.100793e-01	k: 3196	n:30000
Cons ci ratio: 2.370812e-02	ci left: 4.711007e-01	ci right 4.824372e-01	k: 14303	n:30000
KS ci ratio: 1.062952e-01	ci left: 4.105701e-02	ci right 4.569861e-02	k: 1300	n:30000
ITGA8   30000 perm   9 sec   (3499 perm/sec)   p_kst 4.333333e-02   p_cons 4.767667e-01   p_joint 1.065333e-01

Joint ci ratio: 6.879504e-02	ci left: 7.248644e-02	ci right 7.767545e-02	k: 3002	n:40000
Cons ci ratio: 2.049990e-02	ci left: 4.726443e-01	ci right 4.824589e-01	k: 19102	n:40000
KS ci ratio: 9.461098e-02	ci left: 3.919983e-02	ci right 4.311713e-02	k: 1645	n:40000
ITGA8   40000 perm   12 sec   (3448 perm/sec)   p_kst 4.112500e-02   p_cons 4.775500e-01   p_joint 7.505000e-02

Outputting figure to mutsig2_images.part000000000087/ITGA8.8_3312_40000_0.041125_0.47755_0.07505.png
                gene_name: ITGA8
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.078 

Current progress: 26 percent done.
ITGAD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.597900e-02	ci left: 5.328747e-01	ci right 5.525004e-01	k: 5427	n:10000
Cons ci ratio: 5.692071e-02	ci left: 3.124482e-01	ci right 3.308558e-01	k: 3216	n:10000
KS ci ratio: 3.597175e-02	ci left: 5.329749e-01	ci right 5.526002e-01	k: 5428	n:10000
ITGAD   10000 perm   2 sec   (4283 perm/sec)   p_kst 5.428000e-01   p_cons 3.216000e-01   p_joint 5.427000e-01

Outputting figure to mutsig2_images.part000000000087/ITGAD.8_3606_10000_0.5428_0.3216_0.5427.png
                gene_name: ITGAD
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 27 percent done.
ITGAL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.450369e-02	ci left: 5.536120e-01	ci right 5.731511e-01	k: 5634	n:10000
KS ci ratio: 1.429301e-02	ci left: 8.762316e-01	ci right 8.889446e-01	k: 8827	n:10000
ITGAL   10000 perm   3 sec   (3930 perm/sec)   p_kst 8.827000e-01   p_cons 5.634000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITGAL.8_3637_10000_0.8827_0.5634_1.png
                gene_name: ITGAL
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
ITGAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.270515e-02	ci left: 4.473998e-01	ci right 4.670251e-01	k: 4572	n:10000
Cons ci ratio: 4.540162e-02	ci left: 4.172776e-01	ci right 4.367649e-01	k: 4270	n:10000
KS ci ratio: 5.424083e-02	ci left: 3.336927e-01	ci right 3.523989e-01	k: 3430	n:10000
ITGAM   10000 perm   2 sec   (4091 perm/sec)   p_kst 3.430000e-01   p_cons 4.270000e-01   p_joint 4.572000e-01

Outputting figure to mutsig2_images.part000000000087/ITGAM.8_3582_10000_0.343_0.427_0.4572.png
                gene_name: ITGAM
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 30 percent done.
ITIH5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.000184e-02	ci left: 4.799564e-01	ci right 4.996496e-01	k: 4898	n:10000
Cons ci ratio: 3.148575e-02	ci left: 5.981504e-01	ci right 6.173868e-01	k: 6078	n:10000
KS ci ratio: 6.174011e-02	ci left: 2.783450e-01	ci right 2.961790e-01	k: 2872	n:10000
ITIH5L   10000 perm   3 sec   (3741 perm/sec)   p_kst 2.872000e-01   p_cons 6.078000e-01   p_joint 4.898000e-01

Outputting figure to mutsig2_images.part000000000087/ITIH5L.8_3994_10000_0.2872_0.6078_0.4898.png
                gene_name: ITIH5L
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 32 percent done.
JAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.468960e-02	ci left: 1.393291e-01	ci right 1.532776e-01	k: 1462	n:10000
Cons ci ratio: 7.062704e-02	ci left: 2.271129e-01	ci right 2.438415e-01	k: 2354	n:10000
KS ci ratio: 1.172051e-01	ci left: 9.467402e-02	ci right 1.065598e-01	k: 1005	n:10000
JAG1   10000 perm   3 sec   (3946 perm/sec)   p_kst 1.005000e-01   p_cons 2.354000e-01   p_joint 1.462000e-01

Joint ci ratio: 7.610977e-02	ci left: 1.126255e-01	ci right 1.215862e-01	k: 2341	n:20000
Cons ci ratio: 4.695765e-02	ci left: 2.522940e-01	ci right 2.644763e-01	k: 5167	n:20000
KS ci ratio: 8.540206e-02	ci left: 9.121559e-02	ci right 9.940250e-02	k: 1905	n:20000
JAG1   20000 perm   6 sec   (3586 perm/sec)   p_kst 9.525000e-02   p_cons 2.583500e-01   p_joint 1.170500e-01

Outputting figure to mutsig2_images.part000000000087/JAG1.8_3761_20000_0.09525_0.25835_0.11705.png
                gene_name: JAG1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 33 percent done.
JAK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.632823e-02	ci left: 2.006723e-01	ci right 2.166978e-01	k: 2086	n:10000
Cons ci ratio: 5.289665e-02	ci left: 3.450184e-01	ci right 3.638665e-01	k: 3544	n:10000
KS ci ratio: 1.137175e-01	ci left: 1.001293e-01	ci right 1.123011e-01	k: 1061	n:10000
JAK3   10000 perm   3 sec   (3953 perm/sec)   p_kst 1.061000e-01   p_cons 3.544000e-01   p_joint 2.086000e-01

Joint ci ratio: 5.183701e-02	ci left: 2.165532e-01	ci right 2.281276e-01	k: 4446	n:20000
Cons ci ratio: 3.763756e-02	ci left: 3.449797e-01	ci right 3.582635e-01	k: 7032	n:20000
KS ci ratio: 8.142351e-02	ci left: 9.960579e-02	ci right 1.081098e-01	k: 2076	n:20000
JAK3   20000 perm   6 sec   (3594 perm/sec)   p_kst 1.038000e-01   p_cons 3.516000e-01   p_joint 2.223000e-01

Outputting figure to mutsig2_images.part000000000087/JAK3.8_3467_20000_0.1038_0.3516_0.2223.png
                gene_name: JAK3
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 35 percent done.
ITGA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.676522e-02	ci left: 8.381638e-01	ci right 8.524344e-01	k: 8454	n:10000
Cons ci ratio: 2.514891e-02	ci left: 6.993822e-01	ci right 7.172963e-01	k: 7084	n:10000
KS ci ratio: 3.283636e-02	ci left: 5.778774e-01	ci right 5.972716e-01	k: 5876	n:10000
ITGA10   10000 perm   3 sec   (3908 perm/sec)   p_kst 5.876000e-01   p_cons 7.084000e-01   p_joint 8.454000e-01

Outputting figure to mutsig2_images.part000000000087/ITGA10.7_3624_10000_0.5876_0.7084_0.8454.png
                gene_name: ITGA10
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 36 percent done.
ITGA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.949518e-03	ci left: 9.817751e-01	ci right 9.867370e-01	k: 9844	n:10000
Cons ci ratio: 1.653384e-02	ci left: 8.418309e-01	ci right 8.559652e-01	k: 8490	n:10000
KS ci ratio: 2.682125e-02	ci left: 6.718638e-01	ci right 6.902306e-01	k: 6811	n:10000
ITGA5   10000 perm   2 sec   (4500 perm/sec)   p_kst 6.811000e-01   p_cons 8.490000e-01   p_joint 9.844000e-01

Outputting figure to mutsig2_images.part000000000087/ITGA5.7_3270_10000_0.6811_0.849_0.9844.png
                gene_name: ITGA5
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 38 percent done.
ITGAE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.542902e-02	ci left: 8.590646e-01	ci right 8.725215e-01	k: 8659	n:10000
Cons ci ratio: 2.228785e-02	ci left: 7.471549e-01	ci right 7.640960e-01	k: 7557	n:10000
KS ci ratio: 2.803301e-02	ci left: 6.522301e-01	ci right 6.708757e-01	k: 6616	n:10000
ITGAE   10000 perm   2 sec   (4004 perm/sec)   p_kst 6.616000e-01   p_cons 7.557000e-01   p_joint 8.659000e-01

Outputting figure to mutsig2_images.part000000000087/ITGAE.7_3664_10000_0.6616_0.7557_0.8659.png
                gene_name: ITGAE
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 39 percent done.
ITGA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.648848e-02	ci left: 6.773041e-01	ci right 6.955872e-01	k: 6865	n:10000
Cons ci ratio: 1.218113e-02	ci left: 9.062768e-01	ci right 9.174819e-01	k: 9120	n:10000
KS ci ratio: 3.486977e-02	ci left: 5.484010e-01	ci right 5.679651e-01	k: 5582	n:10000
ITGA2   10000 perm   3 sec   (3820 perm/sec)   p_kst 5.582000e-01   p_cons 9.120000e-01   p_joint 6.865000e-01

Outputting figure to mutsig2_images.part000000000087/ITGA2.6_3666_10000_0.5582_0.912_0.6865.png
                gene_name: ITGA2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 41 percent done.
ITGA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.990030e-02	ci left: 7.870536e-01	ci right 8.029742e-01	k: 7951	n:10000
Cons ci ratio: 2.410536e-02	ci left: 7.167396e-01	ci right 7.343289e-01	k: 7256	n:10000
KS ci ratio: 2.683359e-02	ci left: 6.716624e-01	ci right 6.900322e-01	k: 6809	n:10000
ITGA7   10000 perm   3 sec   (3996 perm/sec)   p_kst 6.809000e-01   p_cons 7.256000e-01   p_joint 7.951000e-01

Outputting figure to mutsig2_images.part000000000087/ITGA7.6_3785_10000_0.6809_0.7256_0.7951.png
                gene_name: ITGA7
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 42 percent done.
ITGA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.392673e-01	ci left: 6.170319e-03	ci right 9.725324e-03	k: 78	n:10000
Cons ci ratio: 4.233520e-01	ci left: 6.705543e-03	ci right 1.038936e-02	k: 84	n:10000
KS ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
ITGA9   10000 perm   2 sec   (4398 perm/sec)   p_kst 4.270000e-02   p_cons 8.400000e-03   p_joint 7.800000e-03

Joint ci ratio: 3.871372e-01	ci left: 4.115134e-03	ci right 6.132872e-03	k: 101	n:20000
Cons ci ratio: 2.822767e-01	ci left: 8.202300e-03	ci right 1.094312e-02	k: 190	n:20000
KS ci ratio: 1.313219e-01	ci left: 3.984279e-02	ci right 4.549114e-02	k: 852	n:20000
ITGA9   20000 perm   5 sec   (3890 perm/sec)   p_kst 4.260000e-02   p_cons 9.500000e-03   p_joint 5.050000e-03

Joint ci ratio: 3.973651e-01	ci left: 2.592756e-03	ci right 3.906364e-03	k: 96	n:30000
Cons ci ratio: 2.183043e-01	ci left: 9.472069e-03	ci right 1.182415e-02	k: 318	n:30000
KS ci ratio: 1.061673e-01	ci left: 4.115446e-02	ci right 4.580114e-02	k: 1303	n:30000
ITGA9   30000 perm   8 sec   (3766 perm/sec)   p_kst 4.343333e-02   p_cons 1.060000e-02   p_joint 3.200000e-03

Joint ci ratio: 3.406245e-01	ci left: 2.738922e-03	ci right 3.885061e-03	k: 131	n:40000
Cons ci ratio: 1.928357e-01	ci left: 9.238511e-03	ci right 1.123355e-02	k: 408	n:40000
KS ci ratio: 9.160477e-02	ci left: 4.176625e-02	ci right 4.580032e-02	k: 1750	n:40000
ITGA9   40000 perm   11 sec   (3642 perm/sec)   p_kst 4.375000e-02   p_cons 1.020000e-02   p_joint 3.275000e-03

Joint ci ratio: 3.589144e-01	ci left: 1.953812e-03	ci right 2.825571e-03	k: 118	n:50000
Cons ci ratio: 1.730344e-01	ci left: 9.280380e-03	ci right 1.105718e-02	k: 507	n:50000
KS ci ratio: 8.146317e-02	ci left: 4.245413e-02	ci right 4.607902e-02	k: 2212	n:50000
ITGA9   50000 perm   14 sec   (3556 perm/sec)   p_kst 4.424000e-02   p_cons 1.014000e-02   p_joint 2.360000e-03

Joint ci ratio: 1.996607e-01	ci left: 5.745887e-03	ci right 7.035891e-03	k: 382	n:60000
Cons ci ratio: 1.563596e-01	ci left: 9.555608e-03	ci right 1.119227e-02	k: 621	n:60000
KS ci ratio: 7.376585e-02	ci left: 4.328947e-02	ci right 4.662139e-02	k: 2696	n:60000
ITGA9   60000 perm   17 sec   (3498 perm/sec)   p_kst 4.493333e-02   p_cons 1.035000e-02   p_joint 6.366667e-03

Joint ci ratio: 2.166010e-01	ci left: 4.152744e-03	ci right 5.174697e-03	k: 325	n:70000
Cons ci ratio: 1.436319e-01	ci left: 9.771883e-03	ci right 1.129767e-02	k: 736	n:70000
KS ci ratio: 6.841359e-02	ci left: 4.326525e-02	ci right 4.634405e-02	k: 3135	n:70000
ITGA9   70000 perm   20 sec   (3447 perm/sec)   p_kst 4.478571e-02   p_cons 1.051429e-02   p_joint 4.642857e-03

Joint ci ratio: 2.180116e-01	ci left: 3.586255e-03	ci right 4.475307e-03	k: 321	n:80000
Cons ci ratio: 1.342175e-01	ci left: 9.841470e-03	ci right 1.126936e-02	k: 843	n:80000
KS ci ratio: 6.419224e-02	ci left: 4.310602e-02	ci right 4.597713e-02	k: 3562	n:80000
ITGA9   80000 perm   24 sec   (3390 perm/sec)   p_kst 4.452500e-02   p_cons 1.053750e-02   p_joint 4.012500e-03

Joint ci ratio: 2.059005e-01	ci left: 3.598131e-03	ci right 4.434336e-03	k: 360	n:90000
Cons ci ratio: 1.264406e-01	ci left: 9.898140e-03	ci right 1.124480e-02	k: 950	n:90000
KS ci ratio: 6.050822e-02	ci left: 4.320578e-02	ci right 4.591257e-02	k: 4009	n:90000
ITGA9   90000 perm   27 sec   (3331 perm/sec)   p_kst 4.454444e-02   p_cons 1.055556e-02   p_joint 4.000000e-03

Joint ci ratio: 1.953616e-01	ci left: 3.618237e-03	ci right 4.410957e-03	k: 400	n:100000
Cons ci ratio: 1.203944e-01	ci left: 9.858067e-03	ci right 1.113057e-02	k: 1048	n:100000
KS ci ratio: 5.725241e-02	ci left: 4.349649e-02	ci right 4.607000e-02	k: 4477	n:100000
ITGA9   100000 perm   31 sec   (3254 perm/sec)   p_kst 4.477000e-02   p_cons 1.048000e-02   p_joint 4.000000e-03

Joint ci ratio: 1.920610e-01	ci left: 3.410371e-03	ci right 4.143448e-03	k: 414	n:110000
Cons ci ratio: 1.144363e-01	ci left: 9.950195e-03	ci right 1.116673e-02	k: 1160	n:110000
KS ci ratio: 5.465662e-02	ci left: 4.345041e-02	ci right 4.590094e-02	k: 4913	n:110000
ITGA9   110000 perm   34 sec   (3212 perm/sec)   p_kst 4.466364e-02   p_cons 1.054545e-02   p_joint 3.763636e-03

Joint ci ratio: 1.840330e-01	ci left: 3.419998e-03	ci right 4.120986e-03	k: 451	n:120000
Cons ci ratio: 1.095010e-01	ci left: 9.987722e-03	ci right 1.115278e-02	k: 1267	n:120000
KS ci ratio: 5.240002e-02	ci left: 4.338954e-02	ci right 4.573253e-02	k: 5346	n:120000
ITGA9   120000 perm   38 sec   (3170 perm/sec)   p_kst 4.455000e-02   p_cons 1.055833e-02   p_joint 3.758333e-03

Joint ci ratio: 1.456841e-01	ci left: 5.134836e-03	ci right 5.948997e-03	k: 719	n:130000
Cons ci ratio: 1.006280e-01	ci left: 1.095749e-02	ci right 1.212599e-02	k: 1499	n:130000
KS ci ratio: 5.031062e-02	ci left: 4.349181e-02	ci right 4.574394e-02	k: 5799	n:130000
ITGA9   130000 perm   42 sec   (3129 perm/sec)   p_kst 4.460769e-02   p_cons 1.153077e-02   p_joint 5.530769e-03

Joint ci ratio: 1.436227e-01	ci left: 4.912592e-03	ci right 5.679545e-03	k: 740	n:140000
Cons ci ratio: 9.673714e-02	ci left: 1.103173e-02	ci right 1.216007e-02	k: 1622	n:140000
KS ci ratio: 4.846492e-02	ci left: 4.355988e-02	ci right 4.573046e-02	k: 6249	n:140000
ITGA9   140000 perm   45 sec   (3095 perm/sec)   p_kst 4.463571e-02   p_cons 1.158571e-02   p_joint 5.285714e-03

Joint ci ratio: 1.479217e-01	ci left: 4.315197e-03	ci right 5.010829e-03	k: 698	n:150000
Cons ci ratio: 9.386546e-02	ci left: 1.095354e-02	ci right 1.203880e-02	k: 1723	n:150000
KS ci ratio: 4.695173e-02	ci left: 4.336309e-02	ci right 4.545457e-02	k: 6660	n:150000
ITGA9   150000 perm   49 sec   (3062 perm/sec)   p_kst 4.440000e-02   p_cons 1.148667e-02   p_joint 4.653333e-03

Joint ci ratio: 1.252863e-01	ci left: 5.700099e-03	ci right 6.467964e-03	k: 972	n:160000
Cons ci ratio: 9.085821e-02	ci left: 1.097720e-02	ci right 1.202811e-02	k: 1839	n:160000
KS ci ratio: 4.557865e-02	ci left: 4.317947e-02	ci right 4.519959e-02	k: 7069	n:160000
ITGA9   160000 perm   53 sec   (3030 perm/sec)   p_kst 4.418125e-02   p_cons 1.149375e-02   p_joint 6.075000e-03

Joint ci ratio: 1.047496e-01	ci left: 7.742395e-03	ci right 8.603916e-03	k: 1388	n:170000
Cons ci ratio: 9.164761e-02	ci left: 1.015885e-02	ci right 1.114030e-02	k: 1809	n:170000
KS ci ratio: 4.479125e-02	ci left: 4.214530e-02	ci right 4.408208e-02	k: 7328	n:170000
ITGA9   170000 perm   57 sec   (2995 perm/sec)   p_kst 4.310588e-02   p_cons 1.064118e-02   p_joint 8.164706e-03

Joint ci ratio: 1.058149e-01	ci left: 7.166099e-03	ci right 7.972105e-03	k: 1361	n:180000
Cons ci ratio: 8.957402e-02	ci left: 1.005596e-02	ci right 1.100434e-02	k: 1894	n:180000
KS ci ratio: 4.351204e-02	ci left: 4.220490e-02	ci right 4.408763e-02	k: 7765	n:180000
ITGA9   180000 perm   61 sec   (2962 perm/sec)   p_kst 4.313889e-02   p_cons 1.052222e-02   p_joint 7.561111e-03

Joint ci ratio: 1.101545e-01	ci left: 6.256182e-03	ci right 6.990572e-03	k: 1257	n:190000
Cons ci ratio: 8.699348e-02	ci left: 1.011347e-02	ci right 1.103840e-02	k: 2008	n:190000
KS ci ratio: 4.239869e-02	ci left: 4.213909e-02	ci right 4.396962e-02	k: 8179	n:190000
ITGA9   190000 perm   65 sec   (2930 perm/sec)   p_kst 4.304737e-02   p_cons 1.056842e-02   p_joint 6.615789e-03

Joint ci ratio: 1.087042e-01	ci left: 6.108694e-03	ci right 6.815725e-03	k: 1291	n:200000
Cons ci ratio: 8.464398e-02	ci left: 1.016068e-02	ci right 1.106359e-02	k: 2121	n:200000
KS ci ratio: 4.135407e-02	ci left: 4.210518e-02	ci right 4.388809e-02	k: 8598	n:200000
ITGA9   200000 perm   69 sec   (2899 perm/sec)   p_kst 4.299000e-02   p_cons 1.060500e-02   p_joint 6.455000e-03

Joint ci ratio: 8.879489e-02	ci left: 8.786747e-03	ci right 9.607839e-03	k: 1930	n:210000
Cons ci ratio: 8.269979e-02	ci left: 1.014772e-02	ci right 1.102777e-02	k: 2222	n:210000
KS ci ratio: 4.037836e-02	ci left: 4.208444e-02	ci right 4.382344e-02	k: 9019	n:210000
ITGA9   210000 perm   73 sec   (2862 perm/sec)   p_kst 4.294762e-02   p_cons 1.058095e-02   p_joint 9.190476e-03

Outputting figure to mutsig2_images.part000000000087/ITGA9.6_3220_210000_0.042948_0.010581_0.0091905.png
                gene_name: ITGA9
               theta_stop: 0.089 
                    nperm: 210000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.010 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.0092 
     ci_joint_bounds_left: 0.0088 
    ci_joint_bounds_right: 0.0096 

Current progress: 44 percent done.
ITGAX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.695073e-02	ci left: 8.352108e-01	ci right 8.495891e-01	k: 8425	n:10000
Cons ci ratio: 7.915936e-03	ci left: 9.569143e-01	ci right 9.646143e-01	k: 9609	n:10000
KS ci ratio: 3.814999e-02	ci left: 5.036510e-01	ci right 5.233411e-01	k: 5135	n:10000
ITGAX   10000 perm   2 sec   (4357 perm/sec)   p_kst 5.135000e-01   p_cons 9.609000e-01   p_joint 8.425000e-01

Outputting figure to mutsig2_images.part000000000087/ITGAX.6_3612_10000_0.5135_0.9609_0.8425.png
                gene_name: ITGAX
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 45 percent done.
ITGB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.283085e-02	ci left: 7.380550e-01	ci right 7.552011e-01	k: 7467	n:10000
KS ci ratio: 8.516963e-03	ci left: 9.507523e-01	ci right 9.589800e-01	k: 9550	n:10000
ITGB1   10000 perm   2 sec   (4931 perm/sec)   p_kst 9.550000e-01   p_cons 7.467000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITGB1.6_2695_10000_0.955_0.7467_1.png
                gene_name: ITGB1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
ITGB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.143038e-02	ci left: 9.162609e-01	ci right 9.268919e-01	k: 9217	n:10000
Cons ci ratio: 1.982091e-02	ci left: 7.883719e-01	ci right 8.042551e-01	k: 7964	n:10000
KS ci ratio: 1.973534e-02	ci left: 7.897918e-01	ci right 8.056344e-01	k: 7978	n:10000
ITGB5   10000 perm   2 sec   (4707 perm/sec)   p_kst 7.978000e-01   p_cons 7.964000e-01   p_joint 9.217000e-01

Outputting figure to mutsig2_images.part000000000087/ITGB5.6_2460_10000_0.7978_0.7964_0.9217.png
                gene_name: ITGB5
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 48 percent done.
ITGB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.442281e-02	ci left: 2.614155e-01	ci right 2.789186e-01	k: 2701	n:10000
Cons ci ratio: 5.391754e-02	ci left: 3.363745e-01	ci right 3.551154e-01	k: 3457	n:10000
KS ci ratio: 8.552514e-02	ci left: 1.661239e-01	ci right 1.810667e-01	k: 1735	n:10000
ITGB6   10000 perm   2 sec   (4592 perm/sec)   p_kst 1.735000e-01   p_cons 3.457000e-01   p_joint 2.701000e-01

Outputting figure to mutsig2_images.part000000000087/ITGB6.6_2427_10000_0.1735_0.3457_0.2701.png
                gene_name: ITGB6
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 50 percent done.
JAKMIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.231538e-01	ci left: 1.215729e-02	ci right 1.693165e-02	k: 144	n:10000
Cons ci ratio: 5.474812e-01	ci left: 3.713306e-03	ci right 6.586626e-03	k: 50	n:10000
KS ci ratio: 9.480348e-02	ci left: 1.390351e-01	ci right 1.529718e-01	k: 1459	n:10000
JAKMIP3   10000 perm   2 sec   (4859 perm/sec)   p_kst 1.459000e-01   p_cons 5.000000e-03   p_joint 1.440000e-02

Joint ci ratio: 3.744341e-01	ci left: 4.431766e-03	ci right 6.515982e-03	k: 108	n:20000
Cons ci ratio: 3.871372e-01	ci left: 4.115134e-03	ci right 6.132872e-03	k: 101	n:20000
KS ci ratio: 6.755281e-02	ci left: 1.392105e-01	ci right 1.489932e-01	k: 2881	n:20000
JAKMIP3   20000 perm   5 sec   (4356 perm/sec)   p_kst 1.440500e-01   p_cons 5.050000e-03   p_joint 5.400000e-03

Joint ci ratio: 3.281742e-01	ci left: 3.957669e-03	ci right 5.540593e-03	k: 141	n:30000
Cons ci ratio: 3.281742e-01	ci left: 3.957669e-03	ci right 5.540593e-03	k: 141	n:30000
KS ci ratio: 5.487546e-02	ci left: 1.413630e-01	ci right 1.493725e-01	k: 4360	n:30000
JAKMIP3   30000 perm   7 sec   (4177 perm/sec)   p_kst 1.453333e-01   p_cons 4.700000e-03   p_joint 4.700000e-03

Joint ci ratio: 3.227175e-01	ci left: 3.082802e-03	ci right 4.291016e-03	k: 146	n:40000
Cons ci ratio: 2.859844e-01	ci left: 4.006968e-03	ci right 5.366478e-03	k: 186	n:40000
KS ci ratio: 4.756516e-02	ci left: 1.416866e-01	ci right 1.486150e-01	k: 5805	n:40000
JAKMIP3   40000 perm   10 sec   (4056 perm/sec)   p_kst 1.451250e-01   p_cons 4.650000e-03   p_joint 3.650000e-03

Joint ci ratio: 1.190602e-01	ci left: 1.995522e-02	ci right 2.250079e-02	k: 1060	n:50000
Cons ci ratio: 2.256391e-01	ci left: 5.323021e-03	ci right 6.695285e-03	k: 299	n:50000
KS ci ratio: 4.253850e-02	ci left: 1.420830e-01	ci right 1.482782e-01	k: 7258	n:50000
JAKMIP3   50000 perm   13 sec   (3953 perm/sec)   p_kst 1.451600e-01   p_cons 5.980000e-03   p_joint 2.120000e-02

Joint ci ratio: 1.256333e-01	ci left: 1.496268e-02	ci right 1.698453e-02	k: 957	n:60000
Cons ci ratio: 2.074339e-01	ci left: 5.302872e-03	ci right 6.545650e-03	k: 354	n:60000
KS ci ratio: 3.887084e-02	ci left: 1.421089e-01	ci right 1.477588e-01	k: 8695	n:60000
JAKMIP3   60000 perm   15 sec   (3874 perm/sec)   p_kst 1.449167e-01   p_cons 5.900000e-03   p_joint 1.595000e-02

Joint ci ratio: 1.197731e-01	ci left: 1.416800e-02	ci right 1.598681e-02	k: 1054	n:70000
Cons ci ratio: 1.942207e-01	ci left: 5.223695e-03	ci right 6.360716e-03	k: 404	n:70000
KS ci ratio: 3.588477e-02	ci left: 1.430231e-01	ci right 1.482634e-01	k: 10194	n:70000
JAKMIP3   70000 perm   18 sec   (3798 perm/sec)   p_kst 1.456286e-01   p_cons 5.771429e-03   p_joint 1.505714e-02

Joint ci ratio: 9.817919e-02	ci left: 1.857743e-02	ci right 2.050764e-02	k: 1562	n:80000
Cons ci ratio: 1.828442e-01	ci left: 5.190067e-03	ci right 6.246264e-03	k: 456	n:80000
KS ci ratio: 3.356787e-02	ci left: 1.431874e-01	ci right 1.480883e-01	k: 11650	n:80000
JAKMIP3   80000 perm   21 sec   (3727 perm/sec)   p_kst 1.456250e-01   p_cons 5.700000e-03   p_joint 1.952500e-02

Joint ci ratio: 9.709358e-02	ci left: 1.692447e-02	ci right 1.866236e-02	k: 1600	n:90000
Cons ci ratio: 1.727467e-01	ci left: 5.197325e-03	ci right 6.190498e-03	k: 511	n:90000
KS ci ratio: 3.183221e-02	ci left: 1.418998e-01	ci right 1.465009e-01	k: 12977	n:90000
JAKMIP3   90000 perm   25 sec   (3656 perm/sec)   p_kst 1.441889e-01   p_cons 5.677778e-03   p_joint 1.777778e-02

Joint ci ratio: 9.337188e-02	ci left: 1.651066e-02	ci right 1.813751e-02	k: 1731	n:100000
Cons ci ratio: 1.630038e-01	ci left: 5.281158e-03	ci right 6.227855e-03	k: 574	n:100000
KS ci ratio: 3.018891e-02	ci left: 1.420976e-01	ci right 1.464630e-01	k: 14427	n:100000
JAKMIP3   100000 perm   28 sec   (3583 perm/sec)   p_kst 1.442700e-01   p_cons 5.740000e-03   p_joint 1.731000e-02

Joint ci ratio: 8.574609e-02	ci left: 1.784534e-02	ci right 1.945291e-02	k: 2050	n:110000
Cons ci ratio: 1.552331e-01	ci left: 5.316075e-03	ci right 6.219374e-03	k: 633	n:110000
KS ci ratio: 2.876473e-02	ci left: 1.423638e-01	ci right 1.465277e-01	k: 15888	n:110000
JAKMIP3   110000 perm   31 sec   (3519 perm/sec)   p_kst 1.444364e-01   p_cons 5.754545e-03   p_joint 1.863636e-02

Joint ci ratio: 8.322963e-02	ci left: 1.739403e-02	ci right 1.891271e-02	k: 2177	n:120000
Cons ci ratio: 1.496768e-01	ci left: 5.257800e-03	ci right 6.116354e-03	k: 681	n:120000
KS ci ratio: 2.754149e-02	ci left: 1.424406e-01	ci right 1.464266e-01	k: 17331	n:120000
JAKMIP3   120000 perm   35 sec   (3458 perm/sec)   p_kst 1.444250e-01   p_cons 5.675000e-03   p_joint 1.814167e-02

Joint ci ratio: 8.691049e-02	ci left: 1.473761e-02	ci right 1.608413e-02	k: 2002	n:130000
Cons ci ratio: 1.434959e-01	ci left: 5.297976e-03	ci right 6.124307e-03	k: 741	n:130000
KS ci ratio: 2.647530e-02	ci left: 1.423863e-01	ci right 1.462142e-01	k: 18758	n:130000
JAKMIP3   130000 perm   38 sec   (3405 perm/sec)   p_kst 1.442923e-01   p_cons 5.700000e-03   p_joint 1.540000e-02

Joint ci ratio: 8.558239e-02	ci left: 1.413201e-02	ci right 1.540248e-02	k: 2066	n:140000
Cons ci ratio: 1.381959e-01	ci left: 5.319243e-03	ci right 6.115725e-03	k: 799	n:140000
KS ci ratio: 2.551003e-02	ci left: 1.424773e-01	ci right 1.461660e-01	k: 20204	n:140000
JAKMIP3   140000 perm   42 sec   (3355 perm/sec)   p_kst 1.443143e-01   p_cons 5.707143e-03   p_joint 1.475714e-02

Joint ci ratio: 8.393256e-02	ci left: 1.373136e-02	ci right 1.494085e-02	k: 2149	n:150000
Cons ci ratio: 1.344713e-01	ci left: 5.254383e-03	ci right 6.018251e-03	k: 844	n:150000
KS ci ratio: 2.468450e-02	ci left: 1.421472e-01	ci right 1.457065e-01	k: 21588	n:150000
JAKMIP3   150000 perm   45 sec   (3301 perm/sec)   p_kst 1.439200e-01   p_cons 5.626667e-03   p_joint 1.432667e-02

Joint ci ratio: 8.583097e-02	ci left: 1.231609e-02	ci right 1.342667e-02	k: 2058	n:160000
Cons ci ratio: 1.292908e-01	ci left: 5.343024e-03	ci right 6.087558e-03	k: 913	n:160000
KS ci ratio: 2.387359e-02	ci left: 1.424820e-01	ci right 1.459309e-01	k: 23072	n:160000
JAKMIP3   160000 perm   49 sec   (3235 perm/sec)   p_kst 1.442000e-01   p_cons 5.706250e-03   p_joint 1.286250e-02

Joint ci ratio: 8.890764e-02	ci left: 1.080295e-02	ci right 1.181382e-02	k: 1921	n:170000
Cons ci ratio: 1.255037e-01	ci left: 5.347644e-03	ci right 6.069370e-03	k: 969	n:170000
KS ci ratio: 2.314758e-02	ci left: 1.426737e-01	ci right 1.460208e-01	k: 24538	n:170000
JAKMIP3   170000 perm   53 sec   (3185 perm/sec)   p_kst 1.443412e-01   p_cons 5.700000e-03   p_joint 1.130000e-02

Joint ci ratio: 8.842576e-02	ci left: 1.032219e-02	ci right 1.128255e-02	k: 1943	n:180000
Cons ci ratio: 1.209100e-01	ci left: 5.454398e-03	ci right 6.161661e-03	k: 1044	n:180000
KS ci ratio: 2.249210e-02	ci left: 1.427570e-01	ci right 1.460100e-01	k: 25988	n:180000
JAKMIP3   180000 perm   57 sec   (3147 perm/sec)   p_kst 1.443778e-01   p_cons 5.800000e-03   p_joint 1.079444e-02

Joint ci ratio: 8.632285e-02	ci left: 1.027313e-02	ci right 1.120505e-02	k: 2039	n:190000
Cons ci ratio: 1.175810e-01	ci left: 5.473698e-03	ci right 6.162564e-03	k: 1104	n:190000
KS ci ratio: 2.187582e-02	ci left: 1.429847e-01	ci right 1.461524e-01	k: 27467	n:190000
JAKMIP3   190000 perm   61 sec   (3109 perm/sec)   p_kst 1.445632e-01   p_cons 5.810526e-03   p_joint 1.073158e-02

Joint ci ratio: 8.330519e-02	ci left: 1.049361e-02	ci right 1.141064e-02	k: 2189	n:200000
Cons ci ratio: 1.153118e-01	ci left: 5.413595e-03	ci right 6.080853e-03	k: 1148	n:200000
KS ci ratio: 2.098937e-02	ci left: 1.469392e-01	ci right 1.500610e-01	k: 29699	n:200000
JAKMIP3   200000 perm   65 sec   (3070 perm/sec)   p_kst 1.484950e-01   p_cons 5.740000e-03   p_joint 1.094500e-02

Joint ci ratio: 8.192117e-02	ci left: 1.034365e-02	ci right 1.123184e-02	k: 2264	n:210000
Cons ci ratio: 1.124602e-01	ci left: 5.428757e-03	ci right 6.080238e-03	k: 1207	n:210000
KS ci ratio: 2.048585e-02	ci left: 1.469484e-01	ci right 1.499946e-01	k: 31178	n:210000
JAKMIP3   210000 perm   69 sec   (3032 perm/sec)   p_kst 1.484667e-01   p_cons 5.747619e-03   p_joint 1.078095e-02

Joint ci ratio: 8.147032e-02	ci left: 9.989175e-03	ci right 1.084198e-02	k: 2290	n:220000
Cons ci ratio: 1.100726e-01	ci left: 5.416198e-03	ci right 6.051477e-03	k: 1260	n:220000
KS ci ratio: 1.999857e-02	ci left: 1.471885e-01	ci right 1.501662e-01	k: 32708	n:220000
JAKMIP3   220000 perm   73 sec   (2994 perm/sec)   p_kst 1.486727e-01   p_cons 5.727273e-03   p_joint 1.040909e-02

Joint ci ratio: 8.044909e-02	ci left: 9.806154e-03	ci right 1.063235e-02	k: 2349	n:230000
Cons ci ratio: 1.074206e-01	ci left: 5.447178e-03	ci right 6.069724e-03	k: 1323	n:230000
KS ci ratio: 1.956597e-02	ci left: 1.471313e-01	ci right 1.500428e-01	k: 34174	n:230000
JAKMIP3   230000 perm   78 sec   (2957 perm/sec)   p_kst 1.485826e-01   p_cons 5.752174e-03   p_joint 1.021304e-02

Joint ci ratio: 7.553995e-02	ci left: 1.067649e-02	ci right 1.151871e-02	k: 2662	n:240000
Cons ci ratio: 1.053725e-01	ci left: 5.431111e-03	ci right 6.039252e-03	k: 1375	n:240000
KS ci ratio: 1.917418e-02	ci left: 1.468969e-01	ci right 1.497449e-01	k: 35596	n:240000
JAKMIP3   240000 perm   82 sec   (2922 perm/sec)   p_kst 1.483167e-01   p_cons 5.729167e-03   p_joint 1.109167e-02

Joint ci ratio: 7.656589e-02	ci left: 9.978543e-03	ci right 1.077687e-02	k: 2593	n:250000
Cons ci ratio: 1.031471e-01	ci left: 5.447611e-03	ci right 6.043936e-03	k: 1435	n:250000
KS ci ratio: 1.878357e-02	ci left: 1.469687e-01	ci right 1.497594e-01	k: 37090	n:250000
JAKMIP3   250000 perm   87 sec   (2886 perm/sec)   p_kst 1.483600e-01   p_cons 5.740000e-03   p_joint 1.037200e-02

Joint ci ratio: 7.913214e-02	ci left: 8.979847e-03	ci right 9.723460e-03	k: 2430	n:260000
Cons ci ratio: 1.010570e-01	ci left: 5.462966e-03	ci right 6.048135e-03	k: 1495	n:260000
KS ci ratio: 1.841759e-02	ci left: 1.470126e-01	ci right 1.497491e-01	k: 38578	n:260000
JAKMIP3   260000 perm   91 sec   (2849 perm/sec)   p_kst 1.483769e-01   p_cons 5.750000e-03   p_joint 9.346154e-03

Joint ci ratio: 6.991999e-02	ci left: 1.110487e-02	ci right 1.191307e-02	k: 3106	n:270000
Cons ci ratio: 9.892926e-02	ci left: 5.495358e-03	ci right 6.070884e-03	k: 1560	n:270000
KS ci ratio: 1.806928e-02	ci left: 1.470942e-01	ci right 1.497800e-01	k: 40077	n:270000
JAKMIP3   270000 perm   96 sec   (2808 perm/sec)   p_kst 1.484333e-01   p_cons 5.777778e-03   p_joint 1.150370e-02

Outputting figure to mutsig2_images.part000000000087/JAKMIP3.6_2619_270000_0.14843_0.0057778_0.011504.png
                gene_name: JAKMIP3
               theta_stop: 0.099 
                    nperm: 270000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.0058 
      ci_cons_bounds_left: 0.0055 
     ci_cons_bounds_right: 0.0061 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 52 percent done.
ITGAV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.474450e-02	ci left: 8.694829e-01	ci right 8.824972e-01	k: 8761	n:10000
KS ci ratio: 1.823653e-02	ci left: 8.144611e-01	ci right 8.295509e-01	k: 8221	n:10000
ITGAV   10000 perm   2 sec   (4479 perm/sec)   p_kst 8.221000e-01   p_cons 8.761000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITGAV.5_3318_10000_0.8221_0.8761_1.png
                gene_name: ITGAV
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
ITGB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.378463e-02	ci left: 8.837035e-01	ci right 8.960683e-01	k: 8900	n:10000
Cons ci ratio: 2.830261e-02	ci left: 6.479030e-01	ci right 6.666053e-01	k: 6573	n:10000
KS ci ratio: 2.249902e-02	ci left: 7.436154e-01	ci right 7.606374e-01	k: 7522	n:10000
ITGB2   10000 perm   2 sec   (4887 perm/sec)   p_kst 7.522000e-01   p_cons 6.573000e-01   p_joint 8.900000e-01

Outputting figure to mutsig2_images.part000000000087/ITGB2.5_2370_10000_0.7522_0.6573_0.89.png
                gene_name: ITGB2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 55 percent done.
ITGB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.518550e-02	ci left: 1.380551e-01	ci right 1.519524e-01	k: 1449	n:10000
Cons ci ratio: 1.269826e-01	ci left: 8.144990e-02	ci right 9.259206e-02	k: 869	n:10000
KS ci ratio: 7.148093e-02	ci left: 2.228673e-01	ci right 2.394896e-01	k: 2311	n:10000
ITGB8   10000 perm   2 sec   (5124 perm/sec)   p_kst 2.311000e-01   p_cons 8.690000e-02   p_joint 1.449000e-01

Joint ci ratio: 5.503263e-02	ci left: 1.967512e-01	ci right 2.079355e-01	k: 4046	n:20000
Cons ci ratio: 8.373686e-02	ci left: 9.459997e-02	ci right 1.029171e-01	k: 1974	n:20000
KS ci ratio: 4.961759e-02	ci left: 2.319132e-01	ci right 2.437632e-01	k: 4756	n:20000
ITGB8   20000 perm   4 sec   (4580 perm/sec)   p_kst 2.378000e-01   p_cons 9.870000e-02   p_joint 2.023000e-01

Outputting figure to mutsig2_images.part000000000087/ITGB8.5_2366_20000_0.2378_0.0987_0.2023.png
                gene_name: ITGB8
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 56 percent done.
ITGBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.669787e-02	ci left: 6.738786e-01	ci right 6.922147e-01	k: 6831	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ITGBL1   10000 perm   2 sec   (5441 perm/sec)   p_kst 1   p_cons 6.831000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITGBL1.5_1529_10000_1_0.6831_1.png
                gene_name: ITGBL1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
IVNS1ABP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.021733e-02	ci left: 7.817816e-01	ci right 7.978492e-01	k: 7899	n:10000
KS ci ratio: 2.275242e-02	ci left: 7.393691e-01	ci right 7.564862e-01	k: 7480	n:10000
IVNS1ABP   10000 perm   2 sec   (5147 perm/sec)   p_kst 7.480000e-01   p_cons 7.899000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/IVNS1ABP.5_1981_10000_0.748_0.7899_1.png
                gene_name: IVNS1ABP
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
ISPD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.141213e-02	ci left: 1.804823e-01	ci right 1.958998e-01	k: 1881	n:10000
Cons ci ratio: 8.603533e-02	ci left: 1.644533e-01	ci right 1.793384e-01	k: 1718	n:10000
KS ci ratio: 6.080366e-02	ci left: 2.845862e-01	ci right 3.025342e-01	k: 2935	n:10000
ISPD   10000 perm   2 sec   (5459 perm/sec)   p_kst 2.935000e-01   p_cons 1.718000e-01   p_joint 1.881000e-01

Outputting figure to mutsig2_images.part000000000087/ISPD.4_1396_10000_0.2935_0.1718_0.1881.png
                gene_name: ISPD
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 61 percent done.
ITGA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.441419e-02	ci left: 7.115912e-01	ci right 7.292802e-01	k: 7205	n:10000
Cons ci ratio: 3.080322e-02	ci left: 6.085946e-01	ci right 6.277365e-01	k: 6182	n:10000
KS ci ratio: 3.767943e-02	ci left: 5.098532e-01	ci right 5.295353e-01	k: 5197	n:10000
ITGA11   10000 perm   2 sec   (4468 perm/sec)   p_kst 5.197000e-01   p_cons 6.182000e-01   p_joint 7.205000e-01

Outputting figure to mutsig2_images.part000000000087/ITGA11.4_3687_10000_0.5197_0.6182_0.7205.png
                gene_name: ITGA11
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 62 percent done.
ITGA2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.935524e-02	ci left: 2.945961e-01	ci right 3.127184e-01	k: 3036	n:10000
Cons ci ratio: 6.548479e-02	ci left: 2.550834e-01	ci right 2.724544e-01	k: 2637	n:10000
KS ci ratio: 6.359997e-02	ci left: 2.664630e-01	ci right 2.840681e-01	k: 2752	n:10000
ITGA2B   10000 perm   2 sec   (4383 perm/sec)   p_kst 2.752000e-01   p_cons 2.637000e-01   p_joint 3.036000e-01

Outputting figure to mutsig2_images.part000000000087/ITGA2B.4_3240_10000_0.2752_0.2637_0.3036.png
                gene_name: ITGA2B
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 64 percent done.
ITGA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.395289e-02	ci left: 8.812461e-01	ci right 8.937272e-01	k: 8876	n:10000
Cons ci ratio: 1.721807e-02	ci left: 8.309356e-01	ci right 8.454668e-01	k: 8383	n:10000
KS ci ratio: 2.449299e-02	ci left: 7.102792e-01	ci right 7.279930e-01	k: 7192	n:10000
ITGA3   10000 perm   2 sec   (4717 perm/sec)   p_kst 7.192000e-01   p_cons 8.383000e-01   p_joint 8.876000e-01

Outputting figure to mutsig2_images.part000000000087/ITGA3.4_3416_10000_0.7192_0.8383_0.8876.png
                gene_name: ITGA3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 65 percent done.
ITGA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.351839e-02	ci left: 5.678475e-01	ci right 5.873073e-01	k: 5776	n:10000
Cons ci ratio: 4.562496e-02	ci left: 4.148854e-01	ci right 4.343585e-01	k: 4246	n:10000
KS ci ratio: 3.983416e-02	ci left: 4.820550e-01	ci right 5.017497e-01	k: 4919	n:10000
ITGA6   10000 perm   2 sec   (4451 perm/sec)   p_kst 4.919000e-01   p_cons 4.246000e-01   p_joint 5.776000e-01

Outputting figure to mutsig2_images.part000000000087/ITGA6.4_3488_10000_0.4919_0.4246_0.5776.png
                gene_name: ITGA6
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 67 percent done.
ITGB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.227051e-02	ci left: 5.863057e-01	ci right 6.056384e-01	k: 5960	n:10000
KS ci ratio: 1.152503e-02	ci left: 9.150246e-01	ci right 9.257290e-01	k: 9205	n:10000
ITGB7   10000 perm   2 sec   (5078 perm/sec)   p_kst 9.205000e-01   p_cons 5.960000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITGB7.4_2453_10000_0.9205_0.596_1.png
                gene_name: ITGB7
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
ITIH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.941687e-02	ci left: 1.880620e-01	ci right 2.037156e-01	k: 1958	n:10000
Cons ci ratio: 4.910833e-02	ci left: 3.795277e-01	ci right 3.987369e-01	k: 3891	n:10000
KS ci ratio: 9.863257e-02	ci left: 1.296319e-01	ci right 1.431807e-01	k: 1363	n:10000
ITIH3   10000 perm   2 sec   (4345 perm/sec)   p_kst 1.363000e-01   p_cons 3.891000e-01   p_joint 1.958000e-01

Outputting figure to mutsig2_images.part000000000087/ITIH3.4_2761_10000_0.1363_0.3891_0.1958.png
                gene_name: ITIH3
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 70 percent done.
ITPKB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.008704e-01	ci left: 1.245431e-01	ci right 1.378726e-01	k: 1311	n:10000
Cons ci ratio: 8.313059e-02	ci left: 1.742843e-01	ci right 1.895015e-01	k: 1818	n:10000
KS ci ratio: 1.318562e-01	ci left: 7.582209e-02	ci right 8.662335e-02	k: 811	n:10000
ITPKB   10000 perm   2 sec   (4835 perm/sec)   p_kst 8.110000e-02   p_cons 1.818000e-01   p_joint 1.311000e-01

Joint ci ratio: 7.181649e-02	ci left: 1.249743e-01	ci right 1.343336e-01	k: 2592	n:20000
Cons ci ratio: 6.156279e-02	ci left: 1.633359e-01	ci right 1.737607e-01	k: 3370	n:20000
KS ci ratio: 9.425271e-02	ci left: 7.583612e-02	ci right 8.338663e-02	k: 1591	n:20000
ITPKB   20000 perm   5 sec   (4365 perm/sec)   p_kst 7.955000e-02   p_cons 1.685000e-01   p_joint 1.296000e-01

Outputting figure to mutsig2_images.part000000000087/ITPKB.4_2869_20000_0.07955_0.1685_0.1296.png
                gene_name: ITPKB
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 71 percent done.
IVL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.436572e-02	ci left: 7.123987e-01	ci right 7.300722e-01	k: 7213	n:10000
KS ci ratio: 1.192926e-02	ci left: 9.096710e-01	ci right 9.206857e-01	k: 9153	n:10000
IVL   10000 perm   2 sec   (5814 perm/sec)   p_kst 9.153000e-01   p_cons 7.213000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/IVL.4_1762_10000_0.9153_0.7213_1.png
                gene_name: IVL
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
IYD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.408154e-02	ci left: 2.634937e-01	ci right 2.810391e-01	k: 2722	n:10000
Cons ci ratio: 2.531941e-02	ci left: 6.965581e-01	ci right 7.145221e-01	k: 7056	n:10000
KS ci ratio: 7.575520e-02	ci left: 2.031366e-01	ci right 2.192320e-01	k: 2111	n:10000
IYD   10000 perm   2 sec   (5329 perm/sec)   p_kst 2.111000e-01   p_cons 7.056000e-01   p_joint 2.722000e-01

Outputting figure to mutsig2_images.part000000000087/IYD.4_1067_10000_0.2111_0.7056_0.2722.png
                gene_name: IYD
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 74 percent done.
JAK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.308071e-01	ci left: 7.698582e-02	ci right 8.785890e-02	k: 823	n:10000
Cons ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KS ci ratio: 1.994172e-01	ci left: 3.348089e-02	ci right 4.099178e-02	k: 371	n:10000
JAK1   10000 perm   2 sec   (4248 perm/sec)   p_kst 3.710000e-02   p_cons 1   p_joint 8.230000e-02

Joint ci ratio: 9.361530e-02	ci left: 7.681453e-02	ci right 8.440792e-02	k: 1611	n:20000
Cons ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
KS ci ratio: 1.402313e-01	ci left: 3.495774e-02	ci right 4.027778e-02	k: 751	n:20000
JAK1   20000 perm   5 sec   (3817 perm/sec)   p_kst 3.755000e-02   p_cons 1   p_joint 8.055000e-02

Joint ci ratio: 7.911975e-02	ci left: 7.263311e-02	ci right 7.864938e-02	k: 2268	n:30000
Cons ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
KS ci ratio: 1.127453e-01	ci left: 3.654551e-02	ci right 4.094439e-02	k: 1161	n:30000
JAK1   30000 perm   8 sec   (3650 perm/sec)   p_kst 3.870000e-02   p_cons 1   p_joint 7.560000e-02

Joint ci ratio: 6.568833e-02	ci left: 7.905832e-02	ci right 8.445258e-02	k: 3269	n:40000
Cons ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
KS ci ratio: 9.838063e-02	ci left: 3.629386e-02	ci right 4.007357e-02	k: 1526	n:40000
JAK1   40000 perm   11 sec   (3555 perm/sec)   p_kst 3.815000e-02   p_cons 1   p_joint 8.172500e-02

Outputting figure to mutsig2_images.part000000000087/JAK1.4_3561_40000_0.03815_1_0.081725.png
                gene_name: JAK1
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 1 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.084 

Current progress: 76 percent done.
JKAMP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.185996e-02	ci left: 9.105972e-01	ci right 9.215590e-01	k: 9162	n:10000
KS ci ratio: 2.322310e-02	ci left: 7.314859e-01	ci right 7.487740e-01	k: 7402	n:10000
JKAMP   10000 perm   2 sec   (5991 perm/sec)   p_kst 7.402000e-01   p_cons 9.162000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/JKAMP.4_964_10000_0.7402_0.9162_1.png
                gene_name: JKAMP
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
ITCH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.266795e-02	ci left: 7.407845e-01	ci right 7.578701e-01	k: 7494	n:10000
KS ci ratio: 4.208421e-03	ci left: 9.864298e-01	ci right 9.906784e-01	k: 9887	n:10000
ITCH   10000 perm   2 sec   (4736 perm/sec)   p_kst 9.887000e-01   p_cons 7.494000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITCH.3_2681_10000_0.9887_0.7494_1.png
                gene_name: ITCH
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
ITGA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.129592e-02	ci left: 4.640723e-01	ci right 4.837429e-01	k: 4739	n:10000
Cons ci ratio: 6.476759e-02	ci left: 2.593375e-01	ci right 2.767978e-01	k: 2680	n:10000
KS ci ratio: 5.672566e-02	ci left: 3.139366e-01	ci right 3.323665e-01	k: 3231	n:10000
ITGA1   10000 perm   2 sec   (4360 perm/sec)   p_kst 3.231000e-01   p_cons 2.680000e-01   p_joint 4.739000e-01

Outputting figure to mutsig2_images.part000000000087/ITGA1.3_3656_10000_0.3231_0.268_0.4739.png
                gene_name: ITGA1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 80 percent done.
ITGB3BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.417999e-02	ci left: 4.306386e-01	ci right 4.501961e-01	k: 4404	n:10000
Cons ci ratio: 2.418404e-02	ci left: 7.154271e-01	ci right 7.330421e-01	k: 7243	n:10000
KS ci ratio: 6.295281e-02	ci left: 2.705218e-01	ci right 2.882069e-01	k: 2793	n:10000
ITGB3BP   10000 perm   2 sec   (6475 perm/sec)   p_kst 2.793000e-01   p_cons 7.243000e-01   p_joint 4.404000e-01

Outputting figure to mutsig2_images.part000000000087/ITGB3BP.3_566_10000_0.2793_0.7243_0.4404.png
                gene_name: ITGB3BP
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 82 percent done.
ITGB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.381460e-02	ci left: 5.635359e-01	ci right 5.830214e-01	k: 5733	n:10000
Cons ci ratio: 6.764274e-02	ci left: 2.428218e-01	ci right 2.599232e-01	k: 2513	n:10000
KS ci ratio: 2.455362e-02	ci left: 7.092699e-01	ci right 7.270028e-01	k: 7182	n:10000
ITGB4   10000 perm   3 sec   (3733 perm/sec)   p_kst 7.182000e-01   p_cons 2.513000e-01   p_joint 5.733000e-01

Outputting figure to mutsig2_images.part000000000087/ITGB4.3_5788_10000_0.7182_0.2513_0.5733.png
                gene_name: ITGB4
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 83 percent done.
ITIH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.945362e-02	ci left: 2.939022e-01	ci right 3.120127e-01	k: 3029	n:10000
Cons ci ratio: 2.817710e-02	ci left: 6.499155e-01	ci right 6.685916e-01	k: 6593	n:10000
KS ci ratio: 9.048988e-02	ci left: 1.508034e-01	ci right 1.651964e-01	k: 1579	n:10000
ITIH4   10000 perm   2 sec   (5207 perm/sec)   p_kst 1.579000e-01   p_cons 6.593000e-01   p_joint 3.029000e-01

Outputting figure to mutsig2_images.part000000000087/ITIH4.3_2889_10000_0.1579_0.6593_0.3029.png
                gene_name: ITIH4
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 85 percent done.
ITLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.023915e-02	ci left: 9.312316e-01	ci right 9.409125e-01	k: 9362	n:10000
KS ci ratio: 3.021896e-02	ci left: 6.176367e-01	ci right 6.366892e-01	k: 6272	n:10000
ITLN2   10000 perm   2 sec   (6157 perm/sec)   p_kst 6.272000e-01   p_cons 9.362000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITLN2.3_1010_10000_0.6272_0.9362_1.png
                gene_name: ITLN2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
ITPRIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.186327e-02	ci left: 4.572822e-01	ci right 4.769370e-01	k: 4671	n:10000
Cons ci ratio: 1.179233e-01	ci left: 9.360310e-02	ci right 1.054314e-01	k: 994	n:10000
KS ci ratio: 1.806805e-02	ci left: 8.172052e-01	ci right 8.322052e-01	k: 8248	n:10000
ITPRIP   10000 perm   2 sec   (5920 perm/sec)   p_kst 8.248000e-01   p_cons 9.940000e-02   p_joint 4.671000e-01

Joint ci ratio: 4.322923e-02	ci left: 2.850087e-01	ci right 2.976520e-01	k: 5826	n:20000
Cons ci ratio: 8.197512e-02	ci left: 9.837857e-02	ci right 1.068374e-01	k: 2051	n:20000
KS ci ratio: 1.269372e-02	ci left: 8.213313e-01	ci right 8.318736e-01	k: 16533	n:20000
ITPRIP   20000 perm   4 sec   (5135 perm/sec)   p_kst 8.266500e-01   p_cons 1.025500e-01   p_joint 2.913000e-01

Outputting figure to mutsig2_images.part000000000087/ITPRIP.3_1648_20000_0.82665_0.10255_0.2913.png
                gene_name: ITPRIP
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 88 percent done.
IZUMO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.425481e-01	ci left: 6.526833e-02	ci right 7.538371e-02	k: 702	n:10000
Cons ci ratio: 1.319447e-01	ci left: 7.572512e-02	ci right 8.652038e-02	k: 810	n:10000
KS ci ratio: 1.812101e-01	ci left: 4.063733e-02	ci right 4.883054e-02	k: 446	n:10000
IZUMO1   10000 perm   2 sec   (6256 perm/sec)   p_kst 4.460000e-02   p_cons 8.100000e-02   p_joint 7.020000e-02

Joint ci ratio: 1.433295e-01	ci left: 3.346084e-02	ci right 3.867516e-02	k: 720	n:20000
Cons ci ratio: 8.781642e-02	ci left: 8.660762e-02	ci right 9.461186e-02	k: 1811	n:20000
KS ci ratio: 1.322969e-01	ci left: 3.926179e-02	ci right 4.487233e-02	k: 840	n:20000
IZUMO1   20000 perm   4 sec   (5423 perm/sec)   p_kst 4.200000e-02   p_cons 9.055000e-02   p_joint 3.600000e-02

Joint ci ratio: 1.167772e-01	ci left: 3.408229e-02	ci right 3.834147e-02	k: 1085	n:30000
Cons ci ratio: 7.152879e-02	ci left: 8.773571e-02	ci right 9.427708e-02	k: 2729	n:30000
KS ci ratio: 1.071154e-01	ci left: 4.043988e-02	ci right 4.504921e-02	k: 1281	n:30000
IZUMO1   30000 perm   6 sec   (5037 perm/sec)   p_kst 4.270000e-02   p_cons 9.096667e-02   p_joint 3.616667e-02

Joint ci ratio: 9.589410e-02	ci left: 3.817386e-02	ci right 4.204327e-02	k: 1603	n:40000
Cons ci ratio: 6.213392e-02	ci left: 8.768111e-02	ci right 9.332850e-02	k: 3619	n:40000
KS ci ratio: 9.328885e-02	ci left: 4.029947e-02	ci right 4.426733e-02	k: 1690	n:40000
IZUMO1   40000 perm   8 sec   (4776 perm/sec)   p_kst 4.225000e-02   p_cons 9.047500e-02   p_joint 4.007500e-02

Outputting figure to mutsig2_images.part000000000087/IZUMO1.3_1089_40000_0.04225_0.090475_0.040075.png
                gene_name: IZUMO1
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.042 

Current progress: 89 percent done.
JAM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.530440e-02	ci left: 3.250533e-01	ci right 3.436433e-01	k: 3343	n:10000
Cons ci ratio: 3.089463e-02	ci left: 6.071884e-01	ci right 6.263435e-01	k: 6168	n:10000
KS ci ratio: 7.174331e-02	ci left: 2.215840e-01	ci right 2.381737e-01	k: 2298	n:10000
JAM3   10000 perm   2 sec   (6019 perm/sec)   p_kst 2.298000e-01   p_cons 6.168000e-01   p_joint 3.343000e-01

Outputting figure to mutsig2_images.part000000000087/JAM3.3_1104_10000_0.2298_0.6168_0.3343.png
                gene_name: JAM3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 91 percent done.
ITFG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.332662e-02	ci left: 1.735958e-01	ci right 1.887903e-01	k: 1811	n:10000
Cons ci ratio: 1.347678e-01	ci left: 7.272051e-02	ci right 8.332686e-02	k: 779	n:10000
KS ci ratio: 2.365790e-02	ci left: 7.242122e-01	ci right 7.416519e-01	k: 7330	n:10000
ITFG1   10000 perm   2 sec   (5795 perm/sec)   p_kst 7.330000e-01   p_cons 7.790000e-02   p_joint 1.811000e-01

Joint ci ratio: 5.667917e-02	ci left: 1.875010e-01	ci right 1.984884e-01	k: 3859	n:20000
Cons ci ratio: 1.004153e-01	ci left: 6.723404e-02	ci right 7.439135e-02	k: 1415	n:20000
KS ci ratio: 1.680799e-02	ci left: 7.249471e-01	ci right 7.372856e-01	k: 14623	n:20000
ITFG1   20000 perm   4 sec   (5068 perm/sec)   p_kst 7.311500e-01   p_cons 7.075000e-02   p_joint 1.929500e-01

Joint ci ratio: 1.269256e-02	ci left: 7.558638e-01	ci right 7.655523e-01	k: 22822	n:30000
Cons ci ratio: 8.096829e-02	ci left: 6.952506e-02	ci right 7.542473e-02	k: 2173	n:30000
KS ci ratio: 1.375225e-02	ci left: 7.252727e-01	ci right 7.353493e-01	k: 21910	n:30000
ITFG1   30000 perm   6 sec   (4833 perm/sec)   p_kst 7.303333e-01   p_cons 7.243333e-02   p_joint 7.607333e-01

Outputting figure to mutsig2_images.part000000000087/ITFG1.2_1911_30000_0.73033_0.072433_0.76073.png
                gene_name: ITFG1
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 92 percent done.
ITFG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.770196e-02	ci left: 6.575647e-01	ci right 6.761380e-01	k: 6669	n:10000
Cons ci ratio: 2.004063e-02	ci left: 7.847215e-01	ci right 8.007076e-01	k: 7928	n:10000
KS ci ratio: 1.511704e-01	ci left: 5.821938e-02	ci right 6.783712e-02	k: 629	n:10000
ITFG2   10000 perm   2 sec   (6008 perm/sec)   p_kst 6.290000e-02   p_cons 7.928000e-01   p_joint 6.669000e-01

Joint ci ratio: 2.576990e-02	ci left: 5.294090e-01	ci right 5.432805e-01	k: 10727	n:20000
Cons ci ratio: 1.416204e-02	ci left: 7.873175e-01	ci right 7.985972e-01	k: 15860	n:20000
KS ci ratio: 1.064458e-01	ci left: 6.011022e-02	ci right 6.691736e-02	k: 1269	n:20000
ITFG2   20000 perm   4 sec   (5217 perm/sec)   p_kst 6.345000e-02   p_cons 7.930000e-01   p_joint 5.363500e-01

Joint ci ratio: 2.372397e-02	ci left: 4.707675e-01	ci right 4.821037e-01	k: 14293	n:30000
Cons ci ratio: 1.157494e-02	ci left: 7.880344e-01	ci right 7.972422e-01	k: 23780	n:30000
KS ci ratio: 8.790290e-02	ci left: 5.942755e-02	ci right 6.492429e-02	k: 1864	n:30000
ITFG2   30000 perm   6 sec   (4890 perm/sec)   p_kst 6.213333e-02   p_cons 7.926667e-01   p_joint 4.764333e-01

Outputting figure to mutsig2_images.part000000000087/ITFG2.2_1392_30000_0.062133_0.79267_0.47643.png
                gene_name: ITFG2
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 94 percent done.
ITGB1BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.513967e-02	ci left: 1.674016e-01	ci right 1.823882e-01	k: 1748	n:10000
Cons ci ratio: 1.205181e-02	ci left: 9.080250e-01	ci right 9.191326e-01	k: 9137	n:10000
KS ci ratio: 2.682907e-01	ci left: 1.809309e-02	ci right 2.379077e-02	k: 208	n:10000
ITGB1BP2   10000 perm   2 sec   (5945 perm/sec)   p_kst 2.080000e-02   p_cons 9.137000e-01   p_joint 1.748000e-01

Joint ci ratio: 6.335714e-02	ci left: 1.555361e-01	ci right 1.657628e-01	k: 3212	n:20000
Cons ci ratio: 8.436352e-03	ci left: 9.113045e-01	ci right 9.190743e-01	k: 18305	n:20000
KS ci ratio: 1.962908e-01	ci left: 1.762875e-02	ci right 2.151270e-02	k: 390	n:20000
ITGB1BP2   20000 perm   4 sec   (5202 perm/sec)   p_kst 1.950000e-02   p_cons 9.152500e-01   p_joint 1.606000e-01

Joint ci ratio: 3.370734e-02	ci left: 3.054651e-01	ci right 3.159716e-01	k: 9321	n:30000
Cons ci ratio: 6.857438e-03	ci left: 9.127362e-01	ci right 9.190496e-01	k: 27478	n:30000
KS ci ratio: 1.572233e-01	ci left: 1.870206e-02	ci right 2.192512e-02	k: 608	n:30000
ITGB1BP2   30000 perm   6 sec   (5022 perm/sec)   p_kst 2.026667e-02   p_cons 9.159333e-01   p_joint 3.107000e-01

Joint ci ratio: 4.431273e-02	ci left: 1.599869e-01	ci right 1.672620e-01	k: 6544	n:40000
Cons ci ratio: 5.904081e-03	ci left: 9.140760e-01	ci right 9.195134e-01	k: 36673	n:40000
KS ci ratio: 1.367629e-01	ci left: 1.874709e-02	ci right 2.152319e-02	k: 804	n:40000
ITGB1BP2   40000 perm   8 sec   (4874 perm/sec)   p_kst 2.010000e-02   p_cons 9.168250e-01   p_joint 1.636000e-01

Joint ci ratio: 6.875647e-02	ci left: 5.893742e-02	ci right 6.315372e-02	k: 3051	n:50000
Cons ci ratio: 5.272527e-03	ci left: 9.146083e-01	ci right 9.194631e-01	k: 45853	n:50000
KS ci ratio: 1.220928e-01	ci left: 1.896539e-02	ci right 2.145076e-02	k: 1009	n:50000
ITGB1BP2   50000 perm   10 sec   (4762 perm/sec)   p_kst 2.018000e-02   p_cons 9.170600e-01   p_joint 6.102000e-02

Joint ci ratio: 4.251243e-02	ci left: 1.214718e-01	ci right 1.267646e-01	k: 7446	n:60000
Cons ci ratio: 4.799668e-03	ci left: 9.152531e-01	ci right 9.196731e-01	k: 55049	n:60000
KS ci ratio: 1.116433e-01	ci left: 1.900818e-02	ci right 2.127190e-02	k: 1207	n:60000
ITGB1BP2   60000 perm   13 sec   (4670 perm/sec)   p_kst 2.011667e-02   p_cons 9.174833e-01   p_joint 1.241000e-01

Joint ci ratio: 5.728487e-02	ci left: 6.090106e-02	ci right 6.450672e-02	k: 4388	n:70000
Cons ci ratio: 4.452733e-03	ci left: 9.151051e-01	ci right 9.192031e-01	k: 64202	n:70000
KS ci ratio: 1.029648e-01	ci left: 1.924022e-02	ci right 2.134266e-02	k: 1419	n:70000
ITGB1BP2   70000 perm   15 sec   (4581 perm/sec)   p_kst 2.027143e-02   p_cons 9.171714e-01   p_joint 6.268571e-02

Joint ci ratio: 5.768400e-02	ci left: 5.299856e-02	ci right 5.615884e-02	k: 4365	n:80000
Cons ci ratio: 4.166050e-03	ci left: 9.152058e-01	ci right 9.190389e-01	k: 73371	n:80000
KS ci ratio: 9.621975e-02	ci left: 1.934615e-02	ci right 2.131385e-02	k: 1625	n:80000
ITGB1BP2   80000 perm   18 sec   (4491 perm/sec)   p_kst 2.031250e-02   p_cons 9.171375e-01   p_joint 5.456250e-02

Outputting figure to mutsig2_images.part000000000087/ITGB1BP2.2_1088_80000_0.020313_0.91714_0.054562.png
                gene_name: ITGB1BP2
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.056 

Current progress: 95 percent done.
ITPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.948034e-02	ci left: 6.291955e-01	ci right 6.481237e-01	k: 6387	n:10000
KS ci ratio: 2.637780e-02	ci left: 6.791178e-01	ci right 6.973724e-01	k: 6883	n:10000
ITPA   10000 perm   1 sec   (7078 perm/sec)   p_kst 6.883000e-01   p_cons 6.387000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITPA.2_617_10000_0.6883_0.6387_1.png
                gene_name: ITPA
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
ITPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.715155e-02	ci left: 3.989431e-01	ci right 4.183102e-01	k: 4086	n:10000
Cons ci ratio: 4.215023e-02	ci left: 4.538878e-01	ci right 4.735333e-01	k: 4637	n:10000
KS ci ratio: 2.148972e-01	ci left: 2.873209e-02	ci right 3.574387e-02	k: 321	n:10000
ITPK1   10000 perm   2 sec   (6570 perm/sec)   p_kst 3.210000e-02   p_cons 4.637000e-01   p_joint 4.086000e-01

Joint ci ratio: 8.044320e-03	ci left: 9.185543e-01	ci right 9.260224e-01	k: 18447	n:20000
Cons ci ratio: 2.990623e-02	ci left: 4.551214e-01	ci right 4.689896e-01	k: 9241	n:20000
KS ci ratio: 1.519588e-01	ci left: 2.974850e-02	ci right 3.468873e-02	k: 643	n:20000
ITPK1   20000 perm   4 sec   (5707 perm/sec)   p_kst 3.215000e-02   p_cons 4.620500e-01   p_joint 9.223500e-01

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 2.443784e-02	ci left: 4.560127e-01	ci right 4.673281e-01	k: 13850	n:30000
KS ci ratio: 1.215618e-01	ci left: 3.146011e-02	ci right 3.556422e-02	k: 1004	n:30000
ITPK1   30000 perm   6 sec   (5381 perm/sec)   p_kst 3.346667e-02   p_cons 4.616667e-01   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 2.116373e-02	ci left: 4.567799e-01	ci right 4.665756e-01	k: 18467	n:40000
KS ci ratio: 1.039588e-01	ci left: 3.253782e-02	ci right 3.613020e-02	k: 1372	n:40000
ITPK1   40000 perm   8 sec   (5098 perm/sec)   p_kst 3.430000e-02   p_cons 4.616750e-01   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 1.887615e-02	ci left: 4.587016e-01	ci right 4.674627e-01	k: 23154	n:50000
KS ci ratio: 9.265584e-02	ci left: 3.295644e-02	ci right 3.617789e-02	k: 1727	n:50000
ITPK1   50000 perm   10 sec   (4965 perm/sec)   p_kst 3.454000e-02   p_cons 4.630800e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000087/ITPK1.2_1333_50000_0.03454_0.46308_1.png
                gene_name: ITPK1
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
ITPRIPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.323001e-01	ci left: 7.533730e-02	ci right 8.610844e-02	k: 806	n:10000
Cons ci ratio: 2.442917e-01	ci left: 2.202897e-02	ci right 2.825186e-02	k: 250	n:10000
KS ci ratio: 3.822641e-02	ci left: 5.026508e-01	ci right 5.223419e-01	k: 5125	n:10000
ITPRIPL1   10000 perm   2 sec   (5865 perm/sec)   p_kst 5.125000e-01   p_cons 2.500000e-02   p_joint 8.060000e-02

Joint ci ratio: 8.846213e-02	ci left: 8.543163e-02	ci right 9.338821e-02	k: 1787	n:20000
Cons ci ratio: 1.649854e-01	ci left: 2.518148e-02	ci right 2.975729e-02	k: 548	n:20000
KS ci ratio: 2.721390e-02	ci left: 5.021957e-01	ci right 5.161016e-01	k: 10183	n:20000
ITPRIPL1   20000 perm   4 sec   (5235 perm/sec)   p_kst 5.091500e-01   p_cons 2.740000e-02   p_joint 8.935000e-02

Joint ci ratio: 8.112933e-02	ci left: 6.926340e-02	ci right 7.515310e-02	k: 2165	n:30000
Cons ci ratio: 1.337539e-01	ci left: 2.596885e-02	ci right 2.972334e-02	k: 834	n:30000
KS ci ratio: 2.230745e-02	ci left: 5.015255e-01	ci right 5.128731e-01	k: 15216	n:30000
ITPRIPL1   30000 perm   6 sec   (4985 perm/sec)   p_kst 5.072000e-01   p_cons 2.780000e-02   p_joint 7.216667e-02

Joint ci ratio: 9.788187e-02	ci left: 3.665999e-02	ci right 4.045737e-02	k: 1541	n:40000
Cons ci ratio: 1.180529e-01	ci left: 2.523927e-02	ci right 2.842992e-02	k: 1072	n:40000
KS ci ratio: 1.932388e-02	ci left: 5.021627e-01	ci right 5.119863e-01	k: 20283	n:40000
ITPRIPL1   40000 perm   8 sec   (4818 perm/sec)   p_kst 5.070750e-01   p_cons 2.680000e-02   p_joint 3.852500e-02

Joint ci ratio: 5.630946e-02	ci left: 8.586648e-02	ci right 9.086143e-02	k: 4417	n:50000
Cons ci ratio: 1.056405e-01	ci left: 2.538247e-02	ci right 2.823283e-02	k: 1339	n:50000
KS ci ratio: 1.727823e-02	ci left: 5.028475e-01	ci right 5.116316e-01	k: 25362	n:50000
ITPRIPL1   50000 perm   11 sec   (4686 perm/sec)   p_kst 5.072400e-01   p_cons 2.678000e-02   p_joint 8.834000e-02

Joint ci ratio: 5.381991e-02	ci left: 7.904287e-02	ci right 8.343107e-02	k: 4873	n:60000
Cons ci ratio: 9.737371e-02	ci left: 2.501790e-02	ci right 2.759487e-02	k: 1577	n:60000
KS ci ratio: 1.569963e-02	ci left: 5.055579e-01	ci right 5.135745e-01	k: 30574	n:60000
ITPRIPL1   60000 perm   13 sec   (4568 perm/sec)   p_kst 5.095667e-01   p_cons 2.628333e-02   p_joint 8.121667e-02

Outputting figure to mutsig2_images.part000000000087/ITPRIPL1.2_1710_60000_0.50957_0.026283_0.081217.png
                gene_name: ITPRIPL1
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.083 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000087
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 87 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1559>
Subject: Job 9893980: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1559>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000088> was used as the working directory.
Started at Sat Oct  6 00:13:50 2012
Results reported at Sat Oct  6 00:25:52 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000088.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000088.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 88  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000088.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    791.01 sec.
    Max Memory :      3644 MB
    Max Swap   :      6012 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
88
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 88
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 88: processing genes 7844 - 7933
Calculating significance of each gene.
Using projection method.
7844	JMJD6	7.971835e-01
7845	JMJD7	1
7846	JMJD7-PLA2G4B	8.509580e-01
7847	JMJD8	1
7848	JMY	9.045473e-01
7849	JOSD1	4.980276e-01
7850	JOSD2	1
7851	JPH1	6.864962e-01
7852	JPH2	8.140866e-01
7853	JPH3	9.383443e-01
7854	JPH4	8.691572e-01
7855	JRK	1
7856	JRKL	8.530370e-02
7857	JSRP1	3.434866e-01
7858	JTB	1.499668e-01
7859	JUB	1
7860	JUN	1
7861	JUNB	1
7862	JUND	1
7863	JUP	8.890588e-01
7864	KAAG1	1
7865	KAL1	1.063045e-01
7866	KALRN	1.946741e-01
7867	KANK1	9.877151e-01
7868	KANK2	9.799883e-01
7869	KANK3	8.007767e-01
7870	KANK4	9.293474e-01
7871	KARS	5.356519e-01
7872	KAT2A	9.775084e-01
7873	KAT2B	6.479641e-01
7874	KAT5	3.480153e-01
7875	KATNA1	1
7876	KATNAL1	2.191806e-02
7877	KATNAL2	2.664270e-02
7878	KATNB1	1
7879	KAZ	7.028960e-01
7880	KAZALD1	1
7881	KBTBD10	9.220021e-01
7882	KBTBD12	4.802436e-01
7883	KBTBD2	3.230723e-01
7884	KBTBD3	6.179416e-02
7885	KBTBD4	5.119889e-01
7886	KBTBD5	8.596196e-01
7887	KBTBD6	6.931563e-01
7888	KBTBD7	7.483520e-01
7889	KBTBD8	5.746920e-01
7890	KCMF1	1
7891	KCNA1	3.922415e-03
7892	KCNA10	2.503269e-02
7893	KCNA2	6.584769e-02
7894	KCNA3	4.099678e-02
7895	KCNA4	1.542863e-04
7896	KCNA5	3.153900e-01
7897	KCNA6	7.383925e-01
7898	KCNA7	8.557467e-01
7899	KCNAB1	1.306339e-01
7900	KCNAB2	8.363622e-01
7901	KCNAB3	6.297182e-01
7902	KCNB1	4.156251e-01
7903	KCNB2	1.279753e-03
7904	KCNC1	2.876951e-01
7905	KCNC2	8.379919e-02
7906	KCNC3	4.250763e-01
7907	KCNC4	9.742337e-01
7908	KCND1	2.142591e-01
7909	KCND2	1.560974e-02
7910	KCND3	1.282189e-02
7911	KCNE1	8.356742e-02
7912	KCNE1L	4.433099e-01
7913	KCNE2	1
7914	KCNE3	1
7915	KCNE4	4.950330e-01
7916	KCNF1	7.521170e-01
In gene KCNG1 the following bins exceed PROBCAP:
    COAD-AA-3530	categ 6	N = 1529    n = 1	mu =   1.97e-07
7917	KCNG1	1.545524e-01
7918	KCNG2	1
7919	KCNG3	9.053590e-01
7920	KCNG4	8.264019e-01
7921	KCNH1	1.165162e-01
7922	KCNH2	4.722728e-01
7923	KCNH3	8.936377e-01
7924	KCNH4	9.221535e-01
7925	KCNH5	1.854631e-04
7926	KCNH6	8.954112e-01
7927	KCNH7	6.694443e-04
7928	KCNH8	1.464694e-01
7929	KCNIP1	4.137571e-03
7930	KCNIP2	1.603709e-01
7931	KCNIP3	3.628932e-01
7932	KCNIP4	6.791572e-01
7933	KCNJ1	9.926216e-03
Done

Running MutSig 2:
Scatter job 88: processing genes 7844 - 7933
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KALRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.371700e-02	ci left: 4.358254e-01	ci right 4.554063e-01	k: 4456	n:10000
Cons ci ratio: 4.495916e-02	ci left: 4.220628e-01	ci right 4.415769e-01	k: 4318	n:10000
KS ci ratio: 4.855515e-02	ci left: 3.849027e-01	ci right 4.041588e-01	k: 3945	n:10000
KALRN   10000 perm   4 sec   (2451 perm/sec)   p_kst 3.945000e-01   p_cons 4.318000e-01   p_joint 4.456000e-01

Outputting figure to mutsig2_images.part000000000088/KALRN.23_9357_10000_0.3945_0.4318_0.4456.png
                gene_name: KALRN
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 2 percent done.
KCNH5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.281275e-02	ci left: 7.383583e-01	ci right 7.554977e-01	k: 7470	n:10000
KS ci ratio: 2.835916e-02	ci left: 6.469974e-01	ci right 6.657114e-01	k: 6564	n:10000
KCNH5   10000 perm   3 sec   (3519 perm/sec)   p_kst 6.564000e-01   p_cons 7.470000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNH5.19_3045_10000_0.6564_0.747_1.png
                gene_name: KCNH5
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
KCNH7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.323893e-01	ci left: 7.524035e-02	ci right 8.600545e-02	k: 805	n:10000
Cons ci ratio: 2.145532e-01	ci left: 2.882687e-02	ci right 3.584904e-02	k: 322	n:10000
KS ci ratio: 7.223301e-02	ci left: 2.192151e-01	ci right 2.357440e-01	k: 2274	n:10000
KCNH7   10000 perm   3 sec   (3095 perm/sec)   p_kst 2.274000e-01   p_cons 3.220000e-02   p_joint 8.050000e-02

Joint ci ratio: 1.031460e-01	ci left: 6.386583e-02	ci right 7.086059e-02	k: 1346	n:20000
Cons ci ratio: 1.570719e-01	ci left: 2.782361e-02	ci right 3.261426e-02	k: 603	n:20000
KS ci ratio: 5.112061e-02	ci left: 2.213582e-01	ci right 2.330212e-01	k: 4543	n:20000
KCNH7   20000 perm   7 sec   (2920 perm/sec)   p_kst 2.271500e-01   p_cons 3.015000e-02   p_joint 6.730000e-02

Joint ci ratio: 8.440947e-02	ci left: 6.422883e-02	ci right 6.992203e-02	k: 2011	n:30000
Cons ci ratio: 1.264617e-01	ci left: 2.906762e-02	ci right 3.302389e-02	k: 930	n:30000
KS ci ratio: 4.180344e-02	ci left: 2.219059e-01	ci right 2.314138e-01	k: 6799	n:30000
KCNH7   30000 perm   10 sec   (2872 perm/sec)   p_kst 2.266333e-01   p_cons 3.100000e-02   p_joint 6.703333e-02

Joint ci ratio: 7.138559e-02	ci left: 6.759214e-02	ci right 7.262048e-02	k: 2803	n:40000
Cons ci ratio: 1.081923e-01	ci left: 3.005332e-02	ci right 3.351509e-02	k: 1270	n:40000
KS ci ratio: 3.621237e-02	ci left: 2.224553e-01	ci right 2.306845e-01	k: 9062	n:40000
KCNH7   40000 perm   15 sec   (2752 perm/sec)   p_kst 2.265500e-01   p_cons 3.175000e-02   p_joint 7.007500e-02

Joint ci ratio: 6.928996e-02	ci left: 5.807168e-02	ci right 6.225956e-02	k: 3007	n:50000
Cons ci ratio: 9.714199e-02	ci left: 3.000580e-02	ci right 3.308890e-02	k: 1576	n:50000
KS ci ratio: 3.194439e-02	ci left: 2.277489e-01	ci right 2.351623e-01	k: 11572	n:50000
KCNH7   50000 perm   19 sec   (2681 perm/sec)   p_kst 2.314400e-01   p_cons 3.152000e-02   p_joint 6.014000e-02

Outputting figure to mutsig2_images.part000000000088/KCNH7.19_3721_50000_0.23144_0.03152_0.06014.png
                gene_name: KCNH7
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 5 percent done.
KCNA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.233612e-02	ci left: 7.463458e-01	ci right 7.633055e-01	k: 7549	n:10000
Cons ci ratio: 1.611275e-02	ci left: 8.484554e-01	ci right 8.623369e-01	k: 8555	n:10000
KS ci ratio: 3.532443e-02	ci left: 5.419890e-01	ci right 5.615808e-01	k: 5518	n:10000
KCNA4   10000 perm   3 sec   (3853 perm/sec)   p_kst 5.518000e-01   p_cons 8.555000e-01   p_joint 7.549000e-01

Outputting figure to mutsig2_images.part000000000088/KCNA4.13_1966_10000_0.5518_0.8555_0.7549.png
                gene_name: KCNA4
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 7 percent done.
KCNB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.112712e-01	ci left: 1.042243e-01	ci right 1.166037e-01	k: 1103	n:10000
Cons ci ratio: 5.739355e-02	ci left: 3.088765e-01	ci right 3.272296e-01	k: 3180	n:10000
KS ci ratio: 1.423304e-01	ci left: 6.546168e-02	ci right 7.559023e-02	k: 704	n:10000
KCNB2   10000 perm   3 sec   (3940 perm/sec)   p_kst 7.040000e-02   p_cons 3.180000e-01   p_joint 1.103000e-01

Joint ci ratio: 6.461960e-02	ci left: 1.503551e-01	ci right 1.604453e-01	k: 3107	n:20000
Cons ci ratio: 3.720816e-02	ci left: 3.502068e-01	ci right 3.635349e-01	k: 7137	n:20000
KS ci ratio: 9.965990e-02	ci left: 6.821079e-02	ci right 7.541429e-02	k: 1435	n:20000
KCNB2   20000 perm   5 sec   (3799 perm/sec)   p_kst 7.175000e-02   p_cons 3.568500e-01   p_joint 1.553500e-01

Outputting figure to mutsig2_images.part000000000088/KCNB2.11_2744_20000_0.07175_0.35685_0.15535.png
                gene_name: KCNB2
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 8 percent done.
KCND3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.169468e-01	ci left: 9.506351e-02	ci right 1.069701e-01	k: 1009	n:10000
Cons ci ratio: 9.393873e-02	ci left: 1.412895e-01	ci right 1.553161e-01	k: 1482	n:10000
KS ci ratio: 1.202867e-01	ci left: 9.019709e-02	ci right 1.018395e-01	k: 959	n:10000
KCND3   10000 perm   2 sec   (4809 perm/sec)   p_kst 9.590000e-02   p_cons 1.482000e-01   p_joint 1.009000e-01

Joint ci ratio: 6.534300e-02	ci left: 1.474941e-01	ci right 1.575072e-01	k: 3049	n:20000
Cons ci ratio: 6.410752e-02	ci left: 1.524273e-01	ci right 1.625725e-01	k: 3149	n:20000
KS ci ratio: 8.481310e-02	ci left: 9.239258e-02	ci right 1.006252e-01	k: 1929	n:20000
KCND3   20000 perm   5 sec   (4183 perm/sec)   p_kst 9.645000e-02   p_cons 1.574500e-01   p_joint 1.524500e-01

Outputting figure to mutsig2_images.part000000000088/KCND3.11_1996_20000_0.09645_0.15745_0.15245.png
                gene_name: KCND3
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 10 percent done.
KCNH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.546586e-03	ci left: 9.504396e-01	ci right 9.586930e-01	k: 9547	n:10000
Cons ci ratio: 3.639408e-02	ci left: 5.271675e-01	ci right 5.468110e-01	k: 5370	n:10000
KS ci ratio: 9.066260e-03	ci left: 9.448175e-01	ci right 9.535185e-01	k: 9493	n:10000
KCNH1   10000 perm   2 sec   (4362 perm/sec)   p_kst 9.493000e-01   p_cons 5.370000e-01   p_joint 9.547000e-01

Outputting figure to mutsig2_images.part000000000088/KCNH1.11_3014_10000_0.9493_0.537_0.9547.png
                gene_name: KCNH1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 12 percent done.
KCNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.926953e-02	ci left: 7.975022e-01	ci right 8.131196e-01	k: 8054	n:10000
Cons ci ratio: 3.128144e-02	ci left: 6.012631e-01	ci right 6.204723e-01	k: 6109	n:10000
KS ci ratio: 2.580158e-02	ci left: 6.885921e-01	ci right 7.066926e-01	k: 6977	n:10000
KCNA1   10000 perm   2 sec   (5073 perm/sec)   p_kst 6.977000e-01   p_cons 6.109000e-01   p_joint 8.054000e-01

Outputting figure to mutsig2_images.part000000000088/KCNA1.10_1492_10000_0.6977_0.6109_0.8054.png
                gene_name: KCNA1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 13 percent done.
KCNA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.772737e-01	ci left: 5.108009e-03	ci right 8.389267e-03	k: 66	n:10000
Cons ci ratio: 1.977666e-01	ci left: 3.405205e-02	ci right 4.162024e-02	k: 377	n:10000
KS ci ratio: 2.895240e-01	ci left: 1.539246e-02	ci right 2.069361e-02	k: 179	n:10000
KCNA3   10000 perm   2 sec   (4847 perm/sec)   p_kst 1.790000e-02   p_cons 3.770000e-02   p_joint 6.600000e-03

Joint ci ratio: 2.223652e-01	ci left: 1.359738e-02	ci right 1.704562e-02	k: 305	n:20000
Cons ci ratio: 1.353497e-01	ci left: 3.751972e-02	ci right 4.301496e-02	k: 804	n:20000
KS ci ratio: 2.016150e-01	ci left: 1.667773e-02	ci right 2.046408e-02	k: 370	n:20000
KCNA3   20000 perm   5 sec   (4335 perm/sec)   p_kst 1.850000e-02   p_cons 4.020000e-02   p_joint 1.525000e-02

Joint ci ratio: 2.126491e-01	ci left: 1.000844e-02	ci right 1.242095e-02	k: 335	n:30000
Cons ci ratio: 1.109208e-01	ci left: 3.774564e-02	ci right 4.221067e-02	k: 1198	n:30000
KS ci ratio: 1.645439e-01	ci left: 1.703726e-02	ci right 2.012364e-02	k: 556	n:30000
KCNA3   30000 perm   7 sec   (4135 perm/sec)   p_kst 1.853333e-02   p_cons 3.993333e-02   p_joint 1.116667e-02

Joint ci ratio: 2.083115e-01	ci left: 7.860632e-03	ci right 9.711739e-03	k: 350	n:40000
Cons ci ratio: 9.645934e-02	ci left: 3.773427e-02	ci right 4.158293e-02	k: 1585	n:40000
KS ci ratio: 1.425650e-01	ci left: 1.722613e-02	ci right 1.989441e-02	k: 741	n:40000
KCNA3   40000 perm   10 sec   (4062 perm/sec)   p_kst 1.852500e-02   p_cons 3.962500e-02   p_joint 8.750000e-03

Joint ci ratio: 2.061436e-01	ci left: 6.439702e-03	ci right 7.938370e-03	k: 358	n:50000
Cons ci ratio: 8.617426e-02	ci left: 3.802491e-02	ci right 4.146878e-02	k: 1986	n:50000
KS ci ratio: 1.276898e-01	ci left: 1.731752e-02	ci right 1.969884e-02	k: 924	n:50000
KCNA3   50000 perm   13 sec   (3986 perm/sec)   p_kst 1.848000e-02   p_cons 3.972000e-02   p_joint 7.160000e-03

Joint ci ratio: 1.936454e-01	ci left: 6.126308e-03	ci right 7.455406e-03	k: 406	n:60000
Cons ci ratio: 7.886263e-02	ci left: 3.798813e-02	ci right 4.112327e-02	k: 2372	n:60000
KS ci ratio: 1.174297e-01	ci left: 1.716161e-02	ci right 1.931868e-02	k: 1093	n:60000
KCNA3   60000 perm   15 sec   (3897 perm/sec)   p_kst 1.821667e-02   p_cons 3.953333e-02   p_joint 6.766667e-03

Joint ci ratio: 1.262474e-01	ci left: 1.272737e-02	ci right 1.445616e-02	k: 950	n:70000
Cons ci ratio: 7.288259e-02	ci left: 3.823746e-02	ci right 4.114371e-02	k: 2777	n:70000
KS ci ratio: 1.123764e-01	ci left: 1.612473e-02	ci right 1.805845e-02	k: 1195	n:70000
KCNA3   70000 perm   18 sec   (3819 perm/sec)   p_kst 1.707143e-02   p_cons 3.967143e-02   p_joint 1.357143e-02

Joint ci ratio: 1.262219e-01	ci left: 1.116008e-02	ci right 1.267562e-02	k: 952	n:80000
Cons ci ratio: 6.786287e-02	ci left: 3.867714e-02	ci right 4.140634e-02	k: 3202	n:80000
KS ci ratio: 1.057842e-01	ci left: 1.598158e-02	ci right 1.777870e-02	k: 1349	n:80000
KCNA3   80000 perm   21 sec   (3747 perm/sec)   p_kst 1.686250e-02   p_cons 4.002500e-02   p_joint 1.190000e-02

Joint ci ratio: 1.136086e-01	ci left: 1.231332e-02	ci right 1.380719e-02	k: 1174	n:90000
Cons ci ratio: 6.415235e-02	ci left: 3.855400e-02	ci right 4.112021e-02	k: 3584	n:90000
KS ci ratio: 9.972605e-02	ci left: 1.603542e-02	ci right 1.772926e-02	k: 1518	n:90000
KCNA3   90000 perm   25 sec   (3654 perm/sec)   p_kst 1.686667e-02   p_cons 3.982222e-02   p_joint 1.304444e-02

Joint ci ratio: 1.218706e-01	ci left: 9.615570e-03	ci right 1.087308e-02	k: 1023	n:100000
Cons ci ratio: 6.092670e-02	ci left: 3.853761e-02	ci right 4.096918e-02	k: 3974	n:100000
KS ci ratio: 9.457366e-02	ci left: 1.609060e-02	ci right 1.769759e-02	k: 1688	n:100000
KCNA3   100000 perm   28 sec   (3562 perm/sec)   p_kst 1.688000e-02   p_cons 3.974000e-02   p_joint 1.023000e-02

Joint ci ratio: 1.199914e-01	ci left: 9.032187e-03	ci right 1.019389e-02	k: 1056	n:110000
Cons ci ratio: 5.840153e-02	ci left: 3.819520e-02	ci right 4.050189e-02	k: 4327	n:110000
KS ci ratio: 9.044273e-02	ci left: 1.603094e-02	ci right 1.755833e-02	k: 1846	n:110000
KCNA3   110000 perm   31 sec   (3512 perm/sec)   p_kst 1.678182e-02   p_cons 3.933636e-02   p_joint 9.600000e-03

Joint ci ratio: 1.188544e-01	ci left: 8.449124e-03	ci right 9.524806e-03	k: 1077	n:120000
Cons ci ratio: 5.872673e-02	ci left: 3.474765e-02	ci right 3.685819e-02	k: 4295	n:120000
KS ci ratio: 8.716408e-02	ci left: 1.585202e-02	ci right 1.730481e-02	k: 1988	n:120000
KCNA3   120000 perm   35 sec   (3455 perm/sec)   p_kst 1.656667e-02   p_cons 3.579167e-02   p_joint 8.975000e-03

Joint ci ratio: 9.817418e-02	ci left: 1.152023e-02	ci right 1.271706e-02	k: 1574	n:130000
Cons ci ratio: 5.637888e-02	ci left: 3.484209e-02	ci right 3.687099e-02	k: 4660	n:130000
KS ci ratio: 8.377917e-02	ci left: 1.586721e-02	ci right 1.726217e-02	k: 2152	n:130000
KCNA3   130000 perm   38 sec   (3406 perm/sec)   p_kst 1.655385e-02   p_cons 3.584615e-02   p_joint 1.210769e-02

Outputting figure to mutsig2_images.part000000000088/KCNA3.10_1732_130000_0.016554_0.035846_0.012108.png
                gene_name: KCNA3
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 15 percent done.
KCNA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.854894e-02	ci left: 4.984503e-01	ci right 5.181449e-01	k: 5083	n:10000
Cons ci ratio: 1.348025e-02	ci left: 8.881088e-01	ci right 9.002605e-01	k: 8943	n:10000
KS ci ratio: 6.195184e-02	ci left: 2.769584e-01	ci right 2.947665e-01	k: 2858	n:10000
KCNA10   10000 perm   2 sec   (4595 perm/sec)   p_kst 2.858000e-01   p_cons 8.943000e-01   p_joint 5.083000e-01

Outputting figure to mutsig2_images.part000000000088/KCNA10.9_1540_10000_0.2858_0.8943_0.5083.png
                gene_name: KCNA10
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 17 percent done.
KCNH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.012858e-02	ci left: 6.190435e-01	ci right 6.380815e-01	k: 6286	n:10000
KS ci ratio: 1.184452e-02	ci left: 9.108030e-01	ci right 9.217531e-01	k: 9164	n:10000
KCNH8   10000 perm   3 sec   (3917 perm/sec)   p_kst 9.164000e-01   p_cons 6.286000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNH8.9_3388_10000_0.9164_0.6286_1.png
                gene_name: KCNH8
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
KCNC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.738645e-02	ci left: 3.965527e-01	ci right 4.159020e-01	k: 4062	n:10000
Cons ci ratio: 4.684082e-02	ci left: 4.021307e-01	ci right 4.215207e-01	k: 4118	n:10000
KS ci ratio: 7.275060e-02	ci left: 2.167479e-01	ci right 2.332127e-01	k: 2249	n:10000
KCNC2   10000 perm   2 sec   (4632 perm/sec)   p_kst 2.249000e-01   p_cons 4.118000e-01   p_joint 4.062000e-01

Outputting figure to mutsig2_images.part000000000088/KCNC2.8_1999_10000_0.2249_0.4118_0.4062.png
                gene_name: KCNC2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 20 percent done.
KATNAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.491338e-02	ci left: 4.225613e-01	ci right 4.420781e-01	k: 4323	n:10000
Cons ci ratio: 7.202812e-02	ci left: 2.202021e-01	ci right 2.367564e-01	k: 2284	n:10000
KS ci ratio: 1.619083e-02	ci left: 8.472320e-01	ci right 8.611609e-01	k: 8543	n:10000
KATNAL2   10000 perm   2 sec   (4503 perm/sec)   p_kst 8.543000e-01   p_cons 2.284000e-01   p_joint 4.323000e-01

Outputting figure to mutsig2_images.part000000000088/KATNAL2.7_1457_10000_0.8543_0.2284_0.4323.png
                gene_name: KATNAL2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 22 percent done.
KBTBD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.888903e-02	ci left: 6.385473e-01	ci right 6.573664e-01	k: 6480	n:10000
Cons ci ratio: 5.920124e-02	ci left: 2.956866e-01	ci right 3.138273e-01	k: 3047	n:10000
KS ci ratio: 2.935912e-02	ci left: 6.311057e-01	ci right 6.500123e-01	k: 6406	n:10000
KBTBD3   10000 perm   2 sec   (4694 perm/sec)   p_kst 6.406000e-01   p_cons 3.047000e-01   p_joint 6.480000e-01

Outputting figure to mutsig2_images.part000000000088/KBTBD3.7_1847_10000_0.6406_0.3047_0.648.png
                gene_name: KBTBD3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 23 percent done.
KCNAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.669465e-02	ci left: 8.392842e-01	ci right 8.535134e-01	k: 8465	n:10000
Cons ci ratio: 1.819289e-02	ci left: 8.151724e-01	ci right 8.302391e-01	k: 8228	n:10000
KS ci ratio: 2.632250e-02	ci left: 6.800247e-01	ci right 6.982650e-01	k: 6892	n:10000
KCNAB1   10000 perm   2 sec   (4647 perm/sec)   p_kst 6.892000e-01   p_cons 8.228000e-01   p_joint 8.465000e-01

Outputting figure to mutsig2_images.part000000000088/KCNAB1.7_1787_10000_0.6892_0.8228_0.8465.png
                gene_name: KCNAB1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 25 percent done.
KCND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.561466e-02	ci left: 1.658291e-01	ci right 1.807618e-01	k: 1732	n:10000
Cons ci ratio: 3.966721e-02	ci left: 4.841538e-01	ci right 5.038497e-01	k: 4940	n:10000
KS ci ratio: 1.075295e-01	ci left: 1.109577e-01	ci right 1.236661e-01	k: 1172	n:10000
KCND1   10000 perm   2 sec   (4185 perm/sec)   p_kst 1.172000e-01   p_cons 4.940000e-01   p_joint 1.732000e-01

Joint ci ratio: 5.770953e-02	ci left: 1.820125e-01	ci right 1.928785e-01	k: 3748	n:20000
Cons ci ratio: 2.818044e-02	ci left: 4.847481e-01	ci right 4.986543e-01	k: 9834	n:20000
KS ci ratio: 7.120254e-02	ci left: 1.268944e-01	ci right 1.363130e-01	k: 2631	n:20000
KCND1   20000 perm   5 sec   (4000 perm/sec)   p_kst 1.315500e-01   p_cons 4.917000e-01   p_joint 1.874000e-01

Outputting figure to mutsig2_images.part000000000088/KCND1.7_1968_20000_0.13155_0.4917_0.1874.png
                gene_name: KCND1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 27 percent done.
KCND2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.546220e-02	ci left: 8.585543e-01	ci right 8.720322e-01	k: 8654	n:10000
Cons ci ratio: 4.194744e-02	ci left: 4.562838e-01	ci right 4.759360e-01	k: 4661	n:10000
KS ci ratio: 2.144844e-02	ci left: 7.612190e-01	ci right 7.778238e-01	k: 7696	n:10000
KCND2   10000 perm   2 sec   (4506 perm/sec)   p_kst 7.696000e-01   p_cons 4.661000e-01   p_joint 8.654000e-01

Outputting figure to mutsig2_images.part000000000088/KCND2.7_1917_10000_0.7696_0.4661_0.8654.png
                gene_name: KCND2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 28 percent done.
KAT2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.219806e-01	ci left: 8.786290e-02	ci right 9.937509e-02	k: 935	n:10000
Cons ci ratio: 1.678782e-01	ci left: 4.734532e-02	ci right 5.611815e-02	k: 516	n:10000
KS ci ratio: 1.257205e-01	ci left: 8.300372e-02	ci right 9.423727e-02	k: 885	n:10000
KAT2B   10000 perm   2 sec   (4207 perm/sec)   p_kst 8.850000e-02   p_cons 5.160000e-02   p_joint 9.350000e-02

Joint ci ratio: 1.245349e-01	ci left: 4.425346e-02	ci right 5.017908e-02	k: 943	n:20000
Cons ci ratio: 1.161276e-01	ci left: 5.076176e-02	ci right 5.706873e-02	k: 1077	n:20000
KS ci ratio: 8.937081e-02	ci left: 8.381499e-02	ci right 9.170534e-02	k: 1754	n:20000
KAT2B   20000 perm   5 sec   (3808 perm/sec)   p_kst 8.770000e-02   p_cons 5.385000e-02   p_joint 4.715000e-02

Joint ci ratio: 9.617773e-02	ci left: 4.993781e-02	ci right 5.501597e-02	k: 1573	n:30000
Cons ci ratio: 9.557049e-02	ci left: 5.055674e-02	ci right 5.566357e-02	k: 1592	n:30000
KS ci ratio: 7.264673e-02	ci left: 8.524378e-02	ci right 9.170284e-02	k: 2653	n:30000
KAT2B   30000 perm   8 sec   (3630 perm/sec)   p_kst 8.843333e-02   p_cons 5.306667e-02   p_joint 5.243333e-02

Outputting figure to mutsig2_images.part000000000088/KAT2B.6_2571_30000_0.088433_0.053067_0.052433.png
                gene_name: KAT2B
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.055 

Current progress: 30 percent done.
KBTBD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.327738e-02	ci left: 4.408137e-01	ci right 4.604151e-01	k: 4506	n:10000
KS ci ratio: 7.363547e-03	ci left: 9.622595e-01	ci right 9.694658e-01	k: 9660	n:10000
KBTBD6   10000 perm   2 sec   (5522 perm/sec)   p_kst 9.660000e-01   p_cons 4.506000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KBTBD6.6_2029_10000_0.966_0.4506_1.png
                gene_name: KBTBD6
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
KCNIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.304147e-02	ci left: 8.943634e-01	ci right 9.062022e-01	k: 9004	n:10000
Cons ci ratio: 9.706602e-03	ci left: 9.375495e-01	ci right 9.467908e-01	k: 9423	n:10000
KS ci ratio: 3.138021e-02	ci left: 5.997569e-01	ci right 6.189793e-01	k: 6094	n:10000
KCNIP1   10000 perm   2 sec   (5235 perm/sec)   p_kst 6.094000e-01   p_cons 9.423000e-01   p_joint 9.004000e-01

Outputting figure to mutsig2_images.part000000000088/KCNIP1.6_812_10000_0.6094_0.9423_0.9004.png
                gene_name: KCNIP1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 33 percent done.
JRKL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.882749e-02	ci left: 4.948504e-01	ci right 5.145468e-01	k: 5047	n:10000
KS ci ratio: 1.009287e-02	ci left: 9.329910e-01	ci right 9.425521e-01	k: 9379	n:10000
JRKL   10000 perm   2 sec   (5382 perm/sec)   p_kst 9.379000e-01   p_cons 5.047000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/JRKL.5_1579_10000_0.9379_0.5047_1.png
                gene_name: JRKL
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
KAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.344429e-02	ci left: 3.403483e-01	ci right 3.591393e-01	k: 3497	n:10000
Cons ci ratio: 7.551511e-03	ci left: 9.604756e-01	ci right 9.678508e-01	k: 9643	n:10000
KS ci ratio: 7.180414e-02	ci left: 2.212878e-01	ci right 2.378700e-01	k: 2295	n:10000
KAL1   10000 perm   2 sec   (4116 perm/sec)   p_kst 2.295000e-01   p_cons 9.643000e-01   p_joint 3.497000e-01

Outputting figure to mutsig2_images.part000000000088/KAL1.5_2099_10000_0.2295_0.9643_0.3497.png
                gene_name: KAL1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 37 percent done.
KATNAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.184528e-01	ci left: 9.282438e-02	ci right 1.046106e-01	k: 986	n:10000
Cons ci ratio: 3.107787e-02	ci left: 6.043762e-01	ci right 6.235573e-01	k: 6140	n:10000
KS ci ratio: 1.383594e-01	ci left: 6.913757e-02	ci right 7.951204e-02	k: 742	n:10000
KATNAL1   10000 perm   2 sec   (5673 perm/sec)   p_kst 7.420000e-02   p_cons 6.140000e-01   p_joint 9.860000e-02

Joint ci ratio: 8.797668e-02	ci left: 8.631360e-02	ci right 9.430597e-02	k: 1805	n:20000
Cons ci ratio: 2.212511e-02	ci left: 6.040021e-01	ci right 6.175657e-01	k: 12216	n:20000
KS ci ratio: 9.563005e-02	ci left: 7.378204e-02	ci right 8.124134e-02	k: 1549	n:20000
KATNAL1   20000 perm   4 sec   (5016 perm/sec)   p_kst 7.745000e-02   p_cons 6.108000e-01   p_joint 9.025000e-02

Outputting figure to mutsig2_images.part000000000088/KATNAL1.5_1513_20000_0.07745_0.6108_0.09025.png
                gene_name: KATNAL1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.094 

Current progress: 38 percent done.
KBTBD12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.684594e-02	ci left: 6.714609e-01	ci right 6.898338e-01	k: 6807	n:10000
Cons ci ratio: 2.255936e-02	ci left: 7.426043e-01	ci right 7.596492e-01	k: 7512	n:10000
KS ci ratio: 4.239677e-02	ci left: 4.509930e-01	ci right 4.706299e-01	k: 4608	n:10000
KBTBD12   10000 perm   2 sec   (5333 perm/sec)   p_kst 4.608000e-01   p_cons 7.512000e-01   p_joint 6.807000e-01

Outputting figure to mutsig2_images.part000000000088/KBTBD12.5_1892_10000_0.4608_0.7512_0.6807.png
                gene_name: KBTBD12
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 40 percent done.
KCNA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.871592e-02	ci left: 2.991568e-01	ci right 3.173550e-01	k: 3082	n:10000
Cons ci ratio: 1.414688e-01	ci left: 6.623521e-02	ci right 7.641622e-02	k: 712	n:10000
KS ci ratio: 3.579820e-02	ci left: 5.353783e-01	ci right 5.549953e-01	k: 5452	n:10000
KCNA2   10000 perm   2 sec   (5448 perm/sec)   p_kst 5.452000e-01   p_cons 7.120000e-02   p_joint 3.082000e-01

Joint ci ratio: 4.095112e-02	ci left: 3.077194e-01	ci right 3.206347e-01	k: 6283	n:20000
Cons ci ratio: 9.765953e-02	ci left: 7.089790e-02	ci right 7.822636e-02	k: 1490	n:20000
KS ci ratio: 2.507078e-02	ci left: 5.430734e-01	ci right 5.569121e-01	k: 11000	n:20000
KCNA2   20000 perm   4 sec   (4815 perm/sec)   p_kst 5.500000e-01   p_cons 7.450000e-02   p_joint 3.141500e-01

Outputting figure to mutsig2_images.part000000000088/KCNA2.5_1504_20000_0.55_0.0745_0.31415.png
                gene_name: KCNA2
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 42 percent done.
KCNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.200793e-01	ci left: 9.048895e-02	ci right 1.021474e-01	k: 962	n:10000
Cons ci ratio: 1.194462e-02	ci left: 9.094652e-01	ci right 9.204916e-01	k: 9151	n:10000
KS ci ratio: 1.692637e-01	ci left: 4.657748e-02	ci right 5.528648e-02	k: 508	n:10000
KCNB1   10000 perm   2 sec   (5450 perm/sec)   p_kst 5.080000e-02   p_cons 9.151000e-01   p_joint 9.620000e-02

Joint ci ratio: 7.103171e-02	ci left: 1.274361e-01	ci right 1.368712e-01	k: 2642	n:20000
Cons ci ratio: 8.771717e-03	ci left: 9.049293e-01	ci right 9.129513e-01	k: 18180	n:20000
KS ci ratio: 1.183488e-01	ci left: 4.891463e-02	ci right 5.511643e-02	k: 1039	n:20000
KCNB1   20000 perm   4 sec   (4752 perm/sec)   p_kst 5.195000e-02   p_cons 9.090000e-01   p_joint 1.321000e-01

Joint ci ratio: 6.844182e-02	ci left: 9.518314e-02	ci right 1.019615e-01	k: 2956	n:30000
Cons ci ratio: 7.189040e-03	ci left: 9.050456e-01	ci right 9.116084e-01	k: 27251	n:30000
KS ci ratio: 9.813429e-02	ci left: 4.801652e-02	ci right 5.300432e-02	k: 1514	n:30000
KCNB1   30000 perm   7 sec   (4503 perm/sec)   p_kst 5.046667e-02   p_cons 9.083667e-01   p_joint 9.853333e-02

Outputting figure to mutsig2_images.part000000000088/KCNB1.5_2585_30000_0.050467_0.90837_0.098533.png
                gene_name: KCNB1
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 43 percent done.
KCNC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.029653e-02	ci left: 6.164309e-01	ci right 6.354957e-01	k: 6260	n:10000
Cons ci ratio: 6.256426e-02	ci left: 2.729972e-01	ci right 2.907301e-01	k: 2818	n:10000
KS ci ratio: 3.931186e-02	ci left: 4.886519e-01	ci right 5.083490e-01	k: 4985	n:10000
KCNC1   10000 perm   2 sec   (5203 perm/sec)   p_kst 4.985000e-01   p_cons 2.818000e-01   p_joint 6.260000e-01

Outputting figure to mutsig2_images.part000000000088/KCNC1.5_1806_10000_0.4985_0.2818_0.626.png
                gene_name: KCNC1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 45 percent done.
KCNG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.394806e-02	ci left: 7.193647e-01	ci right 7.369022e-01	k: 7282	n:10000
Cons ci ratio: 3.659211e-02	ci left: 5.244645e-01	ci right 5.441155e-01	k: 5343	n:10000
KS ci ratio: 2.996751e-02	ci left: 6.215560e-01	ci right 6.405676e-01	k: 6311	n:10000
KCNG1   10000 perm   2 sec   (4552 perm/sec)   p_kst 6.311000e-01   p_cons 5.343000e-01   p_joint 7.282000e-01

Outputting figure to mutsig2_images.part000000000088/KCNG1.5_1550_10000_0.6311_0.5343_0.7282.png
                gene_name: KCNG1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 47 percent done.
KCNH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.432174e-02	ci left: 5.562179e-01	ci right 5.757437e-01	k: 5660	n:10000
Cons ci ratio: 4.339994e-02	ci left: 4.394169e-01	ci right 4.590127e-01	k: 4492	n:10000
KS ci ratio: 4.586852e-02	ci left: 4.122941e-01	ci right 4.317514e-01	k: 4220	n:10000
KCNH2   10000 perm   3 sec   (3580 perm/sec)   p_kst 4.220000e-01   p_cons 4.492000e-01   p_joint 5.660000e-01

Outputting figure to mutsig2_images.part000000000088/KCNH2.5_3921_10000_0.422_0.4492_0.566.png
                gene_name: KCNH2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 48 percent done.
KCNH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.628462e-02	ci left: 4.079093e-01	ci right 4.273387e-01	k: 4176	n:10000
KS ci ratio: 1.320792e-02	ci left: 8.920044e-01	ci right 9.039627e-01	k: 8981	n:10000
KCNH6   10000 perm   2 sec   (4749 perm/sec)   p_kst 8.981000e-01   p_cons 4.176000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNH6.5_3041_10000_0.8981_0.4176_1.png
                gene_name: KCNH6
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
KCNIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.634260e-01	ci left: 4.993888e-02	ci right 5.892291e-02	k: 543	n:10000
Cons ci ratio: 2.577789e-01	ci left: 1.968303e-02	ci right 2.559958e-02	k: 225	n:10000
KS ci ratio: 5.132760e-02	ci left: 3.588357e-01	ci right 3.778410e-01	k: 3683	n:10000
KCNIP2   10000 perm   2 sec   (6036 perm/sec)   p_kst 3.683000e-01   p_cons 2.250000e-02   p_joint 5.430000e-02

Joint ci ratio: 1.127930e-01	ci left: 5.372913e-02	ci right 6.020043e-02	k: 1138	n:20000
Cons ci ratio: 1.841662e-01	ci left: 2.010730e-02	ci right 2.423325e-02	k: 442	n:20000
KS ci ratio: 3.660400e-02	ci left: 3.577253e-01	ci right 3.711142e-01	k: 7288	n:20000
KCNIP2   20000 perm   4 sec   (5293 perm/sec)   p_kst 3.644000e-01   p_cons 2.210000e-02   p_joint 5.690000e-02

Joint ci ratio: 8.947354e-02	ci left: 5.743657e-02	ci right 6.284900e-02	k: 1803	n:30000
Cons ci ratio: 1.503145e-01	ci left: 2.049831e-02	ci right 2.386178e-02	k: 664	n:30000
KS ci ratio: 3.006957e-02	ci left: 3.561601e-01	ci right 3.670667e-01	k: 10848	n:30000
KCNIP2   30000 perm   6 sec   (5021 perm/sec)   p_kst 3.616000e-01   p_cons 2.213333e-02   p_joint 6.010000e-02

Joint ci ratio: 7.419897e-02	ci left: 6.279976e-02	ci right 6.766359e-02	k: 2608	n:40000
Cons ci ratio: 1.291868e-01	ci left: 2.104469e-02	ci right 2.397520e-02	k: 899	n:40000
KS ci ratio: 2.594166e-02	ci left: 3.586591e-01	ci right 3.681107e-01	k: 14535	n:40000
KCNIP2   40000 perm   8 sec   (4833 perm/sec)   p_kst 3.633750e-01   p_cons 2.247500e-02   p_joint 6.520000e-02

Joint ci ratio: 6.783793e-02	ci left: 6.047245e-02	ci right 6.473851e-02	k: 3129	n:50000
Cons ci ratio: 1.168297e-01	ci left: 2.073210e-02	ci right 2.332381e-02	k: 1100	n:50000
KS ci ratio: 2.317786e-02	ci left: 3.596609e-01	ci right 3.681149e-01	k: 18194	n:50000
KCNIP2   50000 perm   11 sec   (4622 perm/sec)   p_kst 3.638800e-01   p_cons 2.200000e-02   p_joint 6.258000e-02

Joint ci ratio: 6.189222e-02	ci left: 6.072383e-02	ci right 6.461861e-02	k: 3759	n:60000
Cons ci ratio: 1.068658e-01	ci left: 2.075999e-02	ci right 2.311990e-02	k: 1315	n:60000
KS ci ratio: 2.114088e-02	ci left: 3.604145e-01	ci right 3.681320e-01	k: 21856	n:60000
KCNIP2   60000 perm   13 sec   (4508 perm/sec)   p_kst 3.642667e-01   p_cons 2.191667e-02   p_joint 6.265000e-02

Joint ci ratio: 5.858454e-02	ci left: 5.835045e-02	ci right 6.188612e-02	k: 4207	n:70000
Cons ci ratio: 9.448294e-02	ci left: 2.286488e-02	ci right 2.514624e-02	k: 1679	n:70000
KS ci ratio: 1.959672e-02	ci left: 3.601349e-01	ci right 3.672764e-01	k: 25459	n:70000
KCNIP2   70000 perm   16 sec   (4411 perm/sec)   p_kst 3.637000e-01   p_cons 2.398571e-02   p_joint 6.010000e-02

Outputting figure to mutsig2_images.part000000000088/KCNIP2.5_1059_70000_0.3637_0.023986_0.0601.png
                gene_name: KCNIP2
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 52 percent done.
KCNJ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.519609e-02	ci left: 5.437922e-01	ci right 5.633765e-01	k: 5536	n:10000
Cons ci ratio: 4.341748e-02	ci left: 4.392173e-01	ci right 4.588124e-01	k: 4490	n:10000
KS ci ratio: 5.395331e-02	ci left: 3.360765e-01	ci right 3.548136e-01	k: 3454	n:10000
KCNJ1   10000 perm   2 sec   (5569 perm/sec)   p_kst 3.454000e-01   p_cons 4.490000e-01   p_joint 5.536000e-01

Outputting figure to mutsig2_images.part000000000088/KCNJ1.5_1184_10000_0.3454_0.449_0.5536.png
                gene_name: KCNJ1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 53 percent done.
JMJD7-PLA2G4B
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.888187e-02	ci left: 3.817174e-01	ci right 4.009460e-01	k: 3913	n:10000
KS ci ratio: 2.127910e-02	ci left: 7.640535e-01	ci right 7.805875e-01	k: 7724	n:10000
JMJD7-PLA2G4B   10000 perm   2 sec   (4201 perm/sec)   p_kst 7.724000e-01   p_cons 3.913000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/JMJD7-PLA2G4B.3_3139_10000_0.7724_0.3913_1.png
                gene_name: JMJD7-PLA2G4B
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
KANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.438552e-02	ci left: 3.325008e-01	ci right 3.511914e-01	k: 3418	n:10000
Cons ci ratio: 5.567918e-02	ci left: 3.220751e-01	ci right 3.406233e-01	k: 3313	n:10000
KS ci ratio: 6.174011e-02	ci left: 2.783450e-01	ci right 2.961790e-01	k: 2872	n:10000
KANK1   10000 perm   2 sec   (4227 perm/sec)   p_kst 2.872000e-01   p_cons 3.313000e-01   p_joint 3.418000e-01

Outputting figure to mutsig2_images.part000000000088/KANK1.4_4103_10000_0.2872_0.3313_0.3418.png
                gene_name: KANK1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 57 percent done.
KAT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.747785e-02	ci left: 6.611889e-01	ci right 6.797117e-01	k: 6705	n:10000
Cons ci ratio: 4.255920e-02	ci left: 4.490965e-01	ci right 4.687274e-01	k: 4589	n:10000
KS ci ratio: 5.426490e-02	ci left: 3.334940e-01	ci right 3.521976e-01	k: 3428	n:10000
KAT5   10000 perm   2 sec   (5173 perm/sec)   p_kst 3.428000e-01   p_cons 4.589000e-01   p_joint 6.705000e-01

Outputting figure to mutsig2_images.part000000000088/KAT5.4_1693_10000_0.3428_0.4589_0.6705.png
                gene_name: KAT5
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 58 percent done.
KAZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.356124e-02	ci left: 7.258284e-01	ci right 7.432348e-01	k: 7346	n:10000
Cons ci ratio: 2.497861e-02	ci left: 7.022067e-01	ci right 7.200701e-01	k: 7112	n:10000
KS ci ratio: 3.641604e-02	ci left: 5.268671e-01	ci right 5.465115e-01	k: 5367	n:10000
KAZ   10000 perm   2 sec   (4656 perm/sec)   p_kst 5.367000e-01   p_cons 7.112000e-01   p_joint 7.346000e-01

Outputting figure to mutsig2_images.part000000000088/KAZ.4_2644_10000_0.5367_0.7112_0.7346.png
                gene_name: KAZ
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 60 percent done.
KBTBD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.450369e-02	ci left: 5.536120e-01	ci right 5.731511e-01	k: 5634	n:10000
Cons ci ratio: 2.452213e-03	ci left: 9.947879e-01	ci right 9.973095e-01	k: 9962	n:10000
KS ci ratio: 3.845652e-02	ci left: 4.996504e-01	ci right 5.193441e-01	k: 5095	n:10000
KBTBD10   10000 perm   2 sec   (4550 perm/sec)   p_kst 5.095000e-01   p_cons 9.962000e-01   p_joint 5.634000e-01

Outputting figure to mutsig2_images.part000000000088/KBTBD10.4_1845_10000_0.5095_0.9962_0.5634.png
                gene_name: KBTBD10
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 62 percent done.
KBTBD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.740610e-02	ci left: 3.963535e-01	ci right 4.157013e-01	k: 4060	n:10000
Cons ci ratio: 3.928043e-02	ci left: 4.890517e-01	ci right 5.087489e-01	k: 4989	n:10000
KS ci ratio: 5.859226e-02	ci left: 3.000492e-01	ci right 3.182621e-01	k: 3091	n:10000
KBTBD7   10000 perm   2 sec   (4535 perm/sec)   p_kst 3.091000e-01   p_cons 4.989000e-01   p_joint 4.060000e-01

Outputting figure to mutsig2_images.part000000000088/KBTBD7.4_2059_10000_0.3091_0.4989_0.406.png
                gene_name: KBTBD7
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 63 percent done.
KBTBD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.458093e-01	ci left: 6.246605e-02	ci right 7.238775e-02	k: 673	n:10000
Cons ci ratio: 6.366378e-02	ci left: 2.660670e-01	ci right 2.836643e-01	k: 2748	n:10000
KS ci ratio: 3.073991e-01	ci left: 1.354008e-02	ci right 1.854760e-02	k: 159	n:10000
KBTBD8   10000 perm   2 sec   (5349 perm/sec)   p_kst 1.590000e-02   p_cons 2.748000e-01   p_joint 6.730000e-02

Joint ci ratio: 1.450070e-01	ci left: 3.268875e-02	ci right 3.784751e-02	k: 704	n:20000
Cons ci ratio: 4.528992e-02	ci left: 2.662881e-01	ci right 2.786781e-01	k: 5449	n:20000
KS ci ratio: 2.163410e-01	ci left: 1.440132e-02	ci right 1.794137e-02	k: 322	n:20000
KBTBD8   20000 perm   4 sec   (4746 perm/sec)   p_kst 1.610000e-02   p_cons 2.724500e-01   p_joint 3.520000e-02

Joint ci ratio: 1.531652e-01	ci left: 1.972808e-02	ci right 2.303218e-02	k: 640	n:30000
Cons ci ratio: 3.720743e-02	ci left: 2.650151e-01	ci right 2.750961e-01	k: 8101	n:30000
KS ci ratio: 1.870157e-01	ci left: 1.308242e-02	ci right 1.581280e-02	k: 432	n:30000
KBTBD8   30000 perm   7 sec   (4522 perm/sec)   p_kst 1.440000e-02   p_cons 2.700333e-01   p_joint 2.133333e-02

Joint ci ratio: 1.515535e-01	ci left: 1.520211e-02	ci right 1.771879e-02	k: 657	n:40000
Cons ci ratio: 3.221989e-02	ci left: 2.657282e-01	ci right 2.744552e-01	k: 10803	n:40000
KS ci ratio: 1.615828e-01	ci left: 1.332738e-02	ci right 1.569388e-02	k: 579	n:40000
KBTBD8   40000 perm   10 sec   (4182 perm/sec)   p_kst 1.447500e-02   p_cons 2.700750e-01   p_joint 1.642500e-02

Joint ci ratio: 1.214804e-01	ci left: 1.915941e-02	ci right 2.165671e-02	k: 1019	n:50000
Cons ci ratio: 2.886961e-02	ci left: 2.654949e-01	ci right 2.732919e-01	k: 13469	n:50000
KS ci ratio: 1.457533e-01	ci left: 1.321978e-02	ci right 1.531717e-02	k: 712	n:50000
KBTBD8   50000 perm   12 sec   (4013 perm/sec)   p_kst 1.424000e-02   p_cons 2.693800e-01   p_joint 2.038000e-02

Joint ci ratio: 1.202013e-01	ci left: 1.636881e-02	ci right 1.847824e-02	k: 1044	n:60000
Cons ci ratio: 2.632415e-02	ci left: 2.662845e-01	ci right 2.734044e-01	k: 16190	n:60000
KS ci ratio: 1.315493e-01	ci left: 1.362320e-02	ci right 1.555750e-02	k: 874	n:60000
KBTBD8   60000 perm   16 sec   (3790 perm/sec)   p_kst 1.456667e-02   p_cons 2.698333e-01   p_joint 1.740000e-02

Joint ci ratio: 1.061364e-01	ci left: 1.809885e-02	ci right 2.014129e-02	k: 1337	n:70000
Cons ci ratio: 2.442145e-02	ci left: 2.657460e-01	ci right 2.723303e-01	k: 18832	n:70000
KS ci ratio: 1.207058e-01	ci left: 1.394621e-02	ci right 1.575148e-02	k: 1038	n:70000
KBTBD8   70000 perm   19 sec   (3742 perm/sec)   p_kst 1.482857e-02   p_cons 2.690286e-01   p_joint 1.910000e-02

Joint ci ratio: 9.311090e-02	ci left: 2.066483e-02	ci right 2.269506e-02	k: 1733	n:80000
Cons ci ratio: 2.284594e-02	ci left: 2.659293e-01	ci right 2.720874e-01	k: 21520	n:80000
KS ci ratio: 1.124032e-01	ci left: 1.413261e-02	ci right 1.582783e-02	k: 1197	n:80000
KBTBD8   80000 perm   22 sec   (3711 perm/sec)   p_kst 1.496250e-02   p_cons 2.690000e-01   p_joint 2.166250e-02

Joint ci ratio: 9.606026e-02	ci left: 1.729328e-02	ci right 1.904908e-02	k: 1634	n:90000
Cons ci ratio: 2.152606e-02	ci left: 2.663484e-01	ci right 2.721553e-01	k: 24232	n:90000
KS ci ratio: 1.059648e-01	ci left: 1.418351e-02	ci right 1.578130e-02	k: 1347	n:90000
KBTBD8   90000 perm   24 sec   (3677 perm/sec)   p_kst 1.496667e-02   p_cons 2.692444e-01   p_joint 1.815556e-02

Joint ci ratio: 9.309875e-02	ci left: 1.660837e-02	ci right 1.823979e-02	k: 1741	n:100000
Cons ci ratio: 2.044457e-02	ci left: 2.660540e-01	ci right 2.715595e-01	k: 26880	n:100000
KS ci ratio: 1.000460e-01	ci left: 1.436300e-02	ci right 1.588532e-02	k: 1511	n:100000
KBTBD8   100000 perm   27 sec   (3636 perm/sec)   p_kst 1.511000e-02   p_cons 2.688000e-01   p_joint 1.741000e-02

Joint ci ratio: 8.683087e-02	ci left: 1.740043e-02	ci right 1.898875e-02	k: 2000	n:110000
Cons ci ratio: 1.945763e-02	ci left: 2.668976e-01	ci right 2.721509e-01	k: 29647	n:110000
KS ci ratio: 9.565915e-02	ci left: 1.431658e-02	ci right 1.576370e-02	k: 1653	n:110000
KBTBD8   110000 perm   31 sec   (3594 perm/sec)   p_kst 1.502727e-02   p_cons 2.695182e-01   p_joint 1.818182e-02

Outputting figure to mutsig2_images.part000000000088/KBTBD8.4_1822_110000_0.015027_0.26952_0.018182.png
                gene_name: KBTBD8
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 65 percent done.
KCNA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.943197e-01	ci left: 3.529041e-02	ci right 4.298104e-02	k: 390	n:10000
Cons ci ratio: 7.264646e-02	ci left: 2.172413e-01	ci right 2.337190e-01	k: 2254	n:10000
KS ci ratio: 2.005397e-01	ci left: 3.310027e-02	ci right 4.057267e-02	k: 367	n:10000
KCNA5   10000 perm   2 sec   (4291 perm/sec)   p_kst 3.670000e-02   p_cons 2.254000e-01   p_joint 3.900000e-02

Joint ci ratio: 1.286660e-01	ci left: 4.148978e-02	ci right 4.724363e-02	k: 886	n:20000
Cons ci ratio: 5.252094e-02	ci left: 2.120960e-01	ci right 2.235861e-01	k: 4356	n:20000
KS ci ratio: 1.452206e-01	ci left: 3.259226e-02	ci right 3.774403e-02	k: 702	n:20000
KCNA5   20000 perm   5 sec   (3949 perm/sec)   p_kst 3.510000e-02   p_cons 2.178000e-01   p_joint 4.430000e-02

Joint ci ratio: 1.222558e-01	ci left: 3.110427e-02	ci right 3.518680e-02	k: 993	n:30000
Cons ci ratio: 4.297793e-02	ci left: 2.124126e-01	ci right 2.217756e-01	k: 6512	n:30000
KS ci ratio: 1.181383e-01	ci left: 3.330500e-02	ci right 3.751892e-02	k: 1061	n:30000
KCNA5   30000 perm   8 sec   (3951 perm/sec)   p_kst 3.536667e-02   p_cons 2.170667e-01   p_joint 3.310000e-02

Joint ci ratio: 1.034914e-01	ci left: 3.283029e-02	ci right 3.643768e-02	k: 1384	n:40000
Cons ci ratio: 3.728861e-02	ci left: 2.124224e-01	ci right 2.205188e-01	k: 8658	n:40000
KS ci ratio: 1.014966e-01	ci left: 3.412248e-02	ci right 3.779529e-02	k: 1437	n:40000
KCNA5   40000 perm   10 sec   (3913 perm/sec)   p_kst 3.592500e-02   p_cons 2.164500e-01   p_joint 3.460000e-02

Joint ci ratio: 8.893735e-02	ci left: 3.573422e-02	ci right 3.907976e-02	k: 1869	n:50000
Cons ci ratio: 3.335543e-02	ci left: 2.128170e-01	ci right 2.200560e-01	k: 10821	n:50000
KS ci ratio: 9.048170e-02	ci left: 3.454061e-02	ci right 3.783352e-02	k: 1808	n:50000
KCNA5   50000 perm   13 sec   (3841 perm/sec)   p_kst 3.616000e-02   p_cons 2.164200e-01   p_joint 3.738000e-02

Outputting figure to mutsig2_images.part000000000088/KCNA5.4_1846_50000_0.03616_0.21642_0.03738.png
                gene_name: KCNA5
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 67 percent done.
KCNC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.254881e-02	ci left: 2.730962e-01	ci right 2.908310e-01	k: 2819	n:10000
Cons ci ratio: 1.912809e-02	ci left: 7.998365e-01	ci right 8.153839e-01	k: 8077	n:10000
KS ci ratio: 1.054030e-01	ci left: 1.150598e-01	ci right 1.279615e-01	k: 1214	n:10000
KCNC3   10000 perm   2 sec   (5229 perm/sec)   p_kst 1.214000e-01   p_cons 8.077000e-01   p_joint 2.819000e-01

Joint ci ratio: 5.381809e-02	ci left: 2.039766e-01	ci right 2.153080e-01	k: 4192	n:20000
Cons ci ratio: 1.359923e-02	ci left: 8.004504e-01	ci right 8.114605e-01	k: 16120	n:20000
KS ci ratio: 7.507870e-02	ci left: 1.154284e-01	ci right 1.244824e-01	k: 2398	n:20000
KCNC3   20000 perm   4 sec   (4722 perm/sec)   p_kst 1.199000e-01   p_cons 8.060000e-01   p_joint 2.096000e-01

Outputting figure to mutsig2_images.part000000000088/KCNC3.4_2290_20000_0.1199_0.806_0.2096.png
                gene_name: KCNC3
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 68 percent done.
KCNH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.033322e-01	ci left: 1.192622e-01	ci right 1.323567e-01	k: 1257	n:10000
Cons ci ratio: 1.320333e-01	ci left: 7.562816e-02	ci right 8.641740e-02	k: 809	n:10000
KS ci ratio: 7.213041e-02	ci left: 2.197085e-01	ci right 2.362502e-01	k: 2279	n:10000
KCNH3   10000 perm   2 sec   (4945 perm/sec)   p_kst 2.279000e-01   p_cons 8.090000e-02   p_joint 1.257000e-01

Joint ci ratio: 6.911550e-02	ci left: 1.337406e-01	ci right 1.433648e-01	k: 2770	n:20000
Cons ci ratio: 8.889963e-02	ci left: 8.464776e-02	ci right 9.257232e-02	k: 1771	n:20000
KS ci ratio: 5.033986e-02	ci left: 2.267589e-01	ci right 2.385189e-01	k: 4652	n:20000
KCNH3   20000 perm   5 sec   (4417 perm/sec)   p_kst 2.326000e-01   p_cons 8.855000e-02   p_joint 1.385000e-01

Outputting figure to mutsig2_images.part000000000088/KCNH3.4_3312_20000_0.2326_0.08855_0.1385.png
                gene_name: KCNH3
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 70 percent done.
JPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.266216e-02	ci left: 4.478988e-01	ci right 4.675258e-01	k: 4577	n:10000
Cons ci ratio: 1.193694e-02	ci left: 9.095681e-01	ci right 9.205886e-01	k: 9152	n:10000
KS ci ratio: 5.191724e-02	ci left: 3.535663e-01	ci right 3.725136e-01	k: 3630	n:10000
JPH1   10000 perm   2 sec   (5397 perm/sec)   p_kst 3.630000e-01   p_cons 9.152000e-01   p_joint 4.577000e-01

Outputting figure to mutsig2_images.part000000000088/JPH1.3_2006_10000_0.363_0.9152_0.4577.png
                gene_name: JPH1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 72 percent done.
KARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.970476e-02	ci left: 7.902989e-01	ci right 8.061270e-01	k: 7983	n:10000
KS ci ratio: 4.273097e-02	ci left: 4.471004e-01	ci right 4.667247e-01	k: 4569	n:10000
KARS   10000 perm   2 sec   (5623 perm/sec)   p_kst 4.569000e-01   p_cons 7.983000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KARS.3_2000_10000_0.4569_0.7983_1.png
                gene_name: KARS
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
KBTBD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.719059e-02	ci left: 3.985447e-01	ci right 4.179088e-01	k: 4082	n:10000
Cons ci ratio: 6.723193e-02	ci left: 2.450955e-01	ci right 2.622482e-01	k: 2536	n:10000
KS ci ratio: 4.818124e-02	ci left: 3.885863e-01	ci right 4.078731e-01	k: 3982	n:10000
KBTBD2   10000 perm   2 sec   (5612 perm/sec)   p_kst 3.982000e-01   p_cons 2.536000e-01   p_joint 4.082000e-01

Outputting figure to mutsig2_images.part000000000088/KBTBD2.3_1884_10000_0.3982_0.2536_0.4082.png
                gene_name: KBTBD2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 75 percent done.
KBTBD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.485564e-02	ci left: 5.486014e-01	ci right 5.681645e-01	k: 5584	n:10000
Cons ci ratio: 3.360699e-03	ci left: 9.909413e-01	ci right 9.943623e-01	k: 9928	n:10000
KS ci ratio: 4.888187e-02	ci left: 3.817174e-01	ci right 4.009460e-01	k: 3913	n:10000
KBTBD5   10000 perm   2 sec   (5344 perm/sec)   p_kst 3.913000e-01   p_cons 9.928000e-01   p_joint 5.584000e-01

Outputting figure to mutsig2_images.part000000000088/KBTBD5.3_1890_10000_0.3913_0.9928_0.5584.png
                gene_name: KBTBD5
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 77 percent done.
KCNA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.191911e-01	ci left: 9.175384e-02	ci right 1.034818e-01	k: 975	n:10000
Cons ci ratio: 1.328380e-01	ci left: 7.475563e-02	ci right 8.549047e-02	k: 800	n:10000
KS ci ratio: 1.070134e-01	ci left: 1.119342e-01	ci right 1.246891e-01	k: 1182	n:10000
KCNA6   10000 perm   2 sec   (6186 perm/sec)   p_kst 1.182000e-01   p_cons 8.000000e-02   p_joint 9.750000e-02

Joint ci ratio: 9.830217e-02	ci left: 7.001832e-02	ci right 7.730621e-02	k: 1472	n:20000
Cons ci ratio: 9.219200e-02	ci left: 7.906552e-02	ci right 8.675625e-02	k: 1657	n:20000
KS ci ratio: 7.610977e-02	ci left: 1.126255e-01	ci right 1.215862e-01	k: 2341	n:20000
KCNA6   20000 perm   4 sec   (5306 perm/sec)   p_kst 1.170500e-01   p_cons 8.285000e-02   p_joint 7.360000e-02

Outputting figure to mutsig2_images.part000000000088/KCNA6.3_1594_20000_0.11705_0.08285_0.0736.png
                gene_name: KCNA6
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.077 

Current progress: 78 percent done.
KCNE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.169744e-02	ci left: 5.949377e-01	ci right 6.142014e-01	k: 6046	n:10000
Cons ci ratio: 8.386407e-02	ci left: 1.717274e-01	ci right 1.868599e-01	k: 1792	n:10000
KS ci ratio: 1.179038e-02	ci left: 9.115235e-01	ci right 9.224322e-01	k: 9171	n:10000
KCNE1   10000 perm   1 sec   (6710 perm/sec)   p_kst 9.171000e-01   p_cons 1.792000e-01   p_joint 6.046000e-01

Outputting figure to mutsig2_images.part000000000088/KCNE1.3_394_10000_0.9171_0.1792_0.6046.png
                gene_name: KCNE1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 80 percent done.
KCNH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.791228e-01	ci left: 4.159407e-02	ci right 4.987317e-02	k: 456	n:10000
Cons ci ratio: 1.135979e-01	ci left: 1.003243e-01	ci right 1.125061e-01	k: 1063	n:10000
KS ci ratio: 2.005397e-01	ci left: 3.310027e-02	ci right 4.057267e-02	k: 367	n:10000
KCNH4   10000 perm   2 sec   (5442 perm/sec)   p_kst 3.670000e-02   p_cons 1.063000e-01   p_joint 4.560000e-02

Joint ci ratio: 1.135882e-01	ci left: 5.299920e-02	ci right 5.943059e-02	k: 1123	n:20000
Cons ci ratio: 7.610977e-02	ci left: 1.126255e-01	ci right 1.215862e-01	k: 2341	n:20000
KS ci ratio: 1.410125e-01	ci left: 3.457132e-02	ci right 3.986432e-02	k: 743	n:20000
KCNH4   20000 perm   4 sec   (4790 perm/sec)   p_kst 3.715000e-02   p_cons 1.170500e-01   p_joint 5.615000e-02

Joint ci ratio: 1.042592e-01	ci left: 4.264917e-02	ci right 4.737279e-02	k: 1349	n:30000
Cons ci ratio: 6.284487e-02	ci left: 1.111806e-01	ci right 1.184275e-01	k: 3443	n:30000
KS ci ratio: 1.168889e-01	ci left: 3.401751e-02	ci right 3.827293e-02	k: 1083	n:30000
KCNH4   30000 perm   7 sec   (4549 perm/sec)   p_kst 3.610000e-02   p_cons 1.147667e-01   p_joint 4.496667e-02

Joint ci ratio: 9.366541e-02	ci left: 3.998176e-02	ci right 4.393509e-02	k: 1677	n:40000
Cons ci ratio: 5.665914e-02	ci left: 1.038387e-01	ci right 1.099185e-01	k: 4274	n:40000
KS ci ratio: 1.006287e-01	ci left: 3.470784e-02	ci right 3.840983e-02	k: 1461	n:40000
KCNH4   40000 perm   9 sec   (4392 perm/sec)   p_kst 3.652500e-02   p_cons 1.068500e-01   p_joint 4.192500e-02

Joint ci ratio: 9.513594e-02	ci left: 3.127551e-02	ci right 3.441903e-02	k: 1641	n:50000
Cons ci ratio: 5.054397e-02	ci left: 1.046594e-01	ci right 1.101063e-01	k: 5368	n:50000
KS ci ratio: 8.926016e-02	ci left: 3.547980e-02	ci right 3.881421e-02	k: 1856	n:50000
KCNH4   50000 perm   12 sec   (4239 perm/sec)   p_kst 3.712000e-02   p_cons 1.073600e-01   p_joint 3.282000e-02

Outputting figure to mutsig2_images.part000000000088/KCNH4.3_3118_50000_0.03712_0.10736_0.03282.png
                gene_name: KCNH4
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 82 percent done.
JMJD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.688161e-02	ci left: 3.127459e-01	ci right 3.311579e-01	k: 3219	n:10000
Cons ci ratio: 6.447185e-02	ci left: 2.611186e-01	ci right 2.786156e-01	k: 2698	n:10000
KS ci ratio: 1.498109e-02	ci left: 8.659064e-01	ci right 8.790757e-01	k: 8726	n:10000
JMJD6   10000 perm   2 sec   (6157 perm/sec)   p_kst 8.726000e-01   p_cons 2.698000e-01   p_joint 3.219000e-01

Outputting figure to mutsig2_images.part000000000088/JMJD6.2_1277_10000_0.8726_0.2698_0.3219.png
                gene_name: JMJD6
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 83 percent done.
JMY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.627750e-03	ci left: 9.597417e-01	ci right 9.671851e-01	k: 9636	n:10000
Cons ci ratio: 3.793680e-02	ci left: 5.064518e-01	ci right 5.261387e-01	k: 5163	n:10000
KS ci ratio: 3.130118e-02	ci left: 6.009618e-01	ci right 6.201737e-01	k: 6106	n:10000
JMY   10000 perm   2 sec   (4985 perm/sec)   p_kst 6.106000e-01   p_cons 5.163000e-01   p_joint 9.636000e-01

Outputting figure to mutsig2_images.part000000000088/JMY.2_3007_10000_0.6106_0.5163_0.9636.png
                gene_name: JMY
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 85 percent done.
JPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.578270e-01	ci left: 5.349797e-02	ci right 6.276153e-02	k: 580	n:10000
Cons ci ratio: 4.209943e-02	ci left: 4.544868e-01	ci right 4.741340e-01	k: 4643	n:10000
KS ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
JPH2   10000 perm   2 sec   (5600 perm/sec)   p_kst 3.010000e-02   p_cons 4.643000e-01   p_joint 5.800000e-02

Joint ci ratio: 7.435849e-02	ci left: 1.174451e-01	ci right 1.265651e-01	k: 2439	n:20000
Cons ci ratio: 2.964289e-02	ci left: 4.595164e-01	ci right 4.733934e-01	k: 9329	n:20000
KS ci ratio: 1.601038e-01	ci left: 2.676609e-02	ci right 3.147214e-02	k: 581	n:20000
JPH2   20000 perm   4 sec   (4986 perm/sec)   p_kst 2.905000e-02   p_cons 4.664500e-01   p_joint 1.219500e-01

Joint ci ratio: 6.541557e-02	ci left: 1.033922e-01	ci right 1.104174e-01	k: 3206	n:30000
Cons ci ratio: 2.427135e-02	ci left: 4.594095e-01	ci right 4.707306e-01	k: 13952	n:30000
KS ci ratio: 1.301125e-01	ci left: 2.745293e-02	ci right 3.130560e-02	k: 880	n:30000
JPH2   30000 perm   6 sec   (4741 perm/sec)   p_kst 2.933333e-02   p_cons 4.650667e-01   p_joint 1.068667e-01

Joint ci ratio: 5.572229e-02	ci left: 1.070237e-01	ci right 1.131830e-01	k: 4403	n:40000
Cons ci ratio: 2.103433e-02	ci left: 4.598275e-01	ci right 4.696276e-01	k: 18589	n:40000
KS ci ratio: 1.115449e-01	ci left: 2.827700e-02	ci right 3.164170e-02	k: 1197	n:40000
JPH2   40000 perm   9 sec   (4582 perm/sec)   p_kst 2.992500e-02   p_cons 4.647250e-01   p_joint 1.100750e-01

Joint ci ratio: 4.971287e-02	ci left: 1.078438e-01	ci right 1.133615e-01	k: 5529	n:50000
Cons ci ratio: 1.874760e-02	ci left: 4.620993e-01	ci right 4.708646e-01	k: 23324	n:50000
KS ci ratio: 9.944430e-02	ci left: 2.863920e-02	ci right 3.165568e-02	k: 1506	n:50000
JPH2   50000 perm   11 sec   (4441 perm/sec)   p_kst 3.012000e-02   p_cons 4.664800e-01   p_joint 1.105800e-01

Outputting figure to mutsig2_images.part000000000088/JPH2.2_2126_50000_0.03012_0.46648_0.11058.png
                gene_name: JPH2
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 87 percent done.
JSRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.266772e-02	ci left: 8.995979e-01	ci right 9.111647e-01	k: 9055	n:10000
Cons ci ratio: 1.262330e-02	ci left: 9.002141e-01	ci right 9.117481e-01	k: 9061	n:10000
KS ci ratio: 2.278862e-02	ci left: 7.387626e-01	ci right 7.558931e-01	k: 7474	n:10000
JSRP1   10000 perm   2 sec   (4063 perm/sec)   p_kst 7.474000e-01   p_cons 9.061000e-01   p_joint 9.055000e-01

Outputting figure to mutsig2_images.part000000000088/JSRP1.2_1020_10000_0.7474_0.9061_0.9055.png
                gene_name: JSRP1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 88 percent done.
JTB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.034183e-02	ci left: 6.157275e-01	ci right 6.347995e-01	k: 6253	n:10000
KS ci ratio: 3.190330e-02	ci left: 5.918258e-01	ci right 6.111151e-01	k: 6015	n:10000
JTB   10000 perm   2 sec   (5378 perm/sec)   p_kst 6.015000e-01   p_cons 6.253000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/JTB.2_461_10000_0.6015_0.6253_1.png
                gene_name: JTB
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
JUP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.589946e-02	ci left: 6.869792e-01	ci right 7.051065e-01	k: 6961	n:10000
KS ci ratio: 1.979647e-02	ci left: 7.887776e-01	ci right 8.046492e-01	k: 7968	n:10000
JUP   10000 perm   2 sec   (5691 perm/sec)   p_kst 7.968000e-01   p_cons 6.961000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/JUP.2_2290_10000_0.7968_0.6961_1.png
                gene_name: JUP
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
KANK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.510200e-02	ci left: 2.059958e-01	ci right 2.221711e-01	k: 2140	n:10000
Cons ci ratio: 9.922299e-02	ci left: 1.282615e-01	ci right 1.417519e-01	k: 1349	n:10000
KS ci ratio: 2.170226e-02	ci left: 7.569681e-01	ci right 7.736771e-01	k: 7654	n:10000
KANK4   10000 perm   2 sec   (5292 perm/sec)   p_kst 7.654000e-01   p_cons 1.349000e-01   p_joint 2.140000e-01

Outputting figure to mutsig2_images.part000000000088/KANK4.2_3024_10000_0.7654_0.1349_0.214.png
                gene_name: KANK4
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 93 percent done.
KBTBD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.521587e-02	ci left: 8.623316e-01	ci right 8.756526e-01	k: 8691	n:10000
Cons ci ratio: 4.339994e-02	ci left: 4.394169e-01	ci right 4.590127e-01	k: 4492	n:10000
KS ci ratio: 1.008262e-01	ci left: 1.246409e-01	ci right 1.379747e-01	k: 1312	n:10000
KBTBD4   10000 perm   2 sec   (6039 perm/sec)   p_kst 1.312000e-01   p_cons 4.492000e-01   p_joint 8.691000e-01

Joint ci ratio: 1.075358e-02	ci left: 8.644483e-01	ci right 8.738441e-01	k: 17384	n:20000
Cons ci ratio: 2.974432e-02	ci left: 4.578183e-01	ci right 4.716920e-01	k: 9295	n:20000
KS ci ratio: 7.114030e-02	ci left: 1.270914e-01	ci right 1.365159e-01	k: 2635	n:20000
KBTBD4   20000 perm   4 sec   (5293 perm/sec)   p_kst 1.317500e-01   p_cons 4.647500e-01   p_joint 8.692000e-01

Outputting figure to mutsig2_images.part000000000088/KBTBD4.2_1621_20000_0.13175_0.46475_0.8692.png
                gene_name: KBTBD4
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 95 percent done.
KCNF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.566438e-02	ci left: 2.035310e-01	ci right 2.196374e-01	k: 2115	n:10000
KS ci ratio: 1.456068e-02	ci left: 8.722429e-01	ci right 8.851355e-01	k: 8788	n:10000
KCNF1   10000 perm   2 sec   (6080 perm/sec)   p_kst 8.788000e-01   p_cons 2.115000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNF1.2_1489_10000_0.8788_0.2115_1.png
                gene_name: KCNF1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
KCNG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.051743e-02	ci left: 4.735616e-01	ci right 4.932481e-01	k: 4834	n:10000
Cons ci ratio: 1.103187e-01	ci left: 1.058826e-01	ci right 1.183444e-01	k: 1120	n:10000
KS ci ratio: 5.662210e-02	ci left: 3.147305e-01	ci right 3.331722e-01	k: 3239	n:10000
KCNG4   10000 perm   2 sec   (5776 perm/sec)   p_kst 3.239000e-01   p_cons 1.120000e-01   p_joint 4.834000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.844266e-02	ci left: 1.066291e-01	ci right 1.153844e-01	k: 2219	n:20000
KS ci ratio: 3.940670e-02	ci left: 3.244285e-01	ci right 3.375207e-01	k: 6619	n:20000
KCNG4   20000 perm   4 sec   (5174 perm/sec)   p_kst 3.309500e-01   p_cons 1.109500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000088/KCNG4.2_1568_20000_0.33095_0.11095_1.png
                gene_name: KCNG4
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
KCNIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.252227e-01	ci left: 2.608227e-02	ci right 3.279558e-02	k: 293	n:10000
Cons ci ratio: 2.252227e-01	ci left: 2.608227e-02	ci right 3.279558e-02	k: 293	n:10000
KS ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
KCNIP3   10000 perm   2 sec   (6543 perm/sec)   p_kst 1.086000e-01   p_cons 2.930000e-02   p_joint 2.930000e-02

Joint ci ratio: 1.843982e-02	ci left: 6.867559e-01	ci right 6.995879e-01	k: 13864	n:20000
Cons ci ratio: 1.639141e-01	ci left: 2.551743e-02	ci right 3.012122e-02	k: 555	n:20000
KS ci ratio: 7.997037e-02	ci left: 1.029448e-01	ci right 1.115698e-01	k: 2144	n:20000
KCNIP3   20000 perm   4 sec   (5547 perm/sec)   p_kst 1.072000e-01   p_cons 2.775000e-02   p_joint 6.932000e-01

Joint ci ratio: 1.759634e-02	ci left: 6.177216e-01	ci right 6.287212e-01	k: 18697	n:30000
Cons ci ratio: 1.311903e-01	ci left: 2.700110e-02	ci right 3.082419e-02	k: 866	n:30000
KS ci ratio: 6.459535e-02	ci left: 1.057906e-01	ci right 1.128853e-01	k: 3279	n:30000
KCNIP3   30000 perm   6 sec   (5109 perm/sec)   p_kst 1.093000e-01   p_cons 2.886667e-02   p_joint 6.232333e-01

Joint ci ratio: 1.117344e-02	ci left: 7.504777e-01	ci right 7.589353e-01	k: 30189	n:40000
Cons ci ratio: 1.125168e-01	ci left: 2.779061e-02	ci right 3.112816e-02	k: 1177	n:40000
KS ci ratio: 5.593661e-02	ci left: 1.062829e-01	ci right 1.124239e-01	k: 4373	n:40000
KCNIP3   40000 perm   8 sec   (4948 perm/sec)   p_kst 1.093250e-01   p_cons 2.942500e-02   p_joint 7.547250e-01

Joint ci ratio: 1.678730e-02	ci left: 5.172503e-01	ci right 5.260271e-01	k: 26082	n:50000
Cons ci ratio: 1.012241e-01	ci left: 2.764407e-02	ci right 3.061094e-02	k: 1455	n:50000
KS ci ratio: 5.002361e-02	ci left: 1.066372e-01	ci right 1.121283e-01	k: 5468	n:50000
KCNIP3   50000 perm   10 sec   (4840 perm/sec)   p_kst 1.093600e-01   p_cons 2.910000e-02   p_joint 5.216400e-01

Joint ci ratio: 9.097009e-03	ci left: 7.523251e-01	ci right 7.592169e-01	k: 45347	n:60000
Cons ci ratio: 9.307070e-02	ci left: 2.737855e-02	ci right 3.006729e-02	k: 1722	n:60000
KS ci ratio: 4.567610e-02	ci left: 1.068305e-01	ci right 1.118407e-01	k: 6559	n:60000
KCNIP3   60000 perm   13 sec   (4730 perm/sec)   p_kst 1.093167e-01   p_cons 2.870000e-02   p_joint 7.557833e-01

Outputting figure to mutsig2_images.part000000000088/KCNIP3.2_914_60000_0.10932_0.0287_0.75578.png
                gene_name: KCNIP3
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000088
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 88 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1641>
Subject: Job 9893984: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1641>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000089> was used as the working directory.
Started at Sat Oct  6 00:15:20 2012
Results reported at Sat Oct  6 00:28:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000089.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000089.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 89  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000089.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    836.58 sec.
    Max Memory :      3487 MB
    Max Swap   :      5937 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
89
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 89
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 89: processing genes 7934 - 8023
Calculating significance of each gene.
Using projection method.
7934	KCNJ10	3.266986e-01
7935	KCNJ11	6.704391e-01
7936	KCNJ12	2.172913e-01
7937	KCNJ13	7.884273e-01
7938	KCNJ14	4.265602e-01
7939	KCNJ15	1.320901e-01
7940	KCNJ16	5.445913e-02
7941	KCNJ2	8.386309e-01
7942	KCNJ3	9.219865e-02
7943	KCNJ4	8.633915e-01
7944	KCNJ5	1.488088e-01
7945	KCNJ6	8.946322e-01
7946	KCNJ8	5.371655e-01
7947	KCNJ9	2.089184e-01
7948	KCNK1	3.896747e-01
7949	KCNK10	3.738488e-01
7950	KCNK12	1
7951	KCNK13	9.334143e-03
7952	KCNK15	1
7953	KCNK16	6.686107e-01
7954	KCNK17	1.153778e-01
7955	KCNK18	2.466020e-01
7956	KCNK2	6.250487e-02
7957	KCNK3	4.307362e-01
7958	KCNK4	1
7959	KCNK5	1.729692e-01
7960	KCNK6	4.268783e-01
7961	KCNK7	1
7962	KCNK9	5.835013e-02
7963	KCNMA1	7.420130e-02
7964	KCNMB1	6.410594e-01
7965	KCNMB2	5.671164e-01
7966	KCNMB3	1
7967	KCNMB4	2.364823e-01
7968	KCNN1	8.607597e-01
7969	KCNN2	3.736406e-01
7970	KCNN3	6.225248e-01
7971	KCNN4	1
7972	KCNQ1	6.450189e-01
7973	KCNQ2	6.322117e-01
In gene KCNQ3 the following bins exceed PROBCAP:
    READ-AG-A01L	categ 6	N = 2557    n = 1	mu =   3.23e-07
7974	KCNQ3	4.312399e-04
7975	KCNQ4	1.523528e-01
7976	KCNQ5	2.751080e-03
7977	KCNRG	8.832353e-02
7978	KCNS1	1
7979	KCNS2	5.450964e-02
7980	KCNS3	1.023869e-01
7981	KCNT1	8.664404e-01
7982	KCNT2	2.019683e-03
7983	KCNU1	5.202318e-01
7984	KCNV1	4.013406e-01
7985	KCNV2	4.185683e-01
7986	KCTD1	3.279404e-01
7987	KCTD10	7.691948e-01
7988	KCTD11	5.850990e-01
7989	KCTD12	8.332072e-01
7990	KCTD13	6.593456e-01
7991	KCTD14	7.434027e-01
7992	KCTD15	1
7993	KCTD16	2.546807e-01
7994	KCTD17	1
7995	KCTD18	2.613446e-01
7996	KCTD19	8.975206e-01
7997	KCTD2	1
7998	KCTD20	7.450832e-02
7999	KCTD21	2.802045e-01
8000/18030 8000	KCTD3	4.145779e-01
8001	KCTD4	3.964812e-01
8002	KCTD5	1
8003	KCTD6	4.221306e-01
8004	KCTD7	6.496287e-02
8005	KCTD8	1.023928e-01
8006	KCTD9	6.442808e-01
8007	KDELC1	5.374059e-01
8008	KDELC2	4.780501e-01
8009	KDELR1	4.201766e-01
8010	KDELR2	7.074710e-01
8011	KDELR3	4.367293e-01
8012	KDM1A	8.169072e-01
8013	KDM1B	7.661751e-01
8014	KDM2A	5.742611e-01
8015	KDM2B	8.859004e-01
8016	KDM3A	5.691008e-01
8017	KDM3B	3.679269e-01
8018	KDM4A	7.751312e-01
8019	KDM4B	1
8020	KDM4C	3.721977e-01
8021	KDM4D	5.818988e-01
8022	KDM5A	5.664716e-01
8023	KDM5B	1.129108e-01
Done

Running MutSig 2:
Scatter job 89: processing genes 7934 - 8023
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KCNQ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.108113e-02	ci left: 2.248418e-01	ci right 2.415139e-01	k: 2331	n:10000
Cons ci ratio: 1.023114e-01	ci left: 1.214132e-01	ci right 1.346043e-01	k: 1279	n:10000
KS ci ratio: 5.208602e-02	ci left: 3.520751e-01	ci right 3.710056e-01	k: 3615	n:10000
KCNQ3   10000 perm   2 sec   (4596 perm/sec)   p_kst 3.615000e-01   p_cons 1.279000e-01   p_joint 2.331000e-01

Joint ci ratio: 5.200245e-02	ci left: 2.154636e-01	ci right 2.270176e-01	k: 4424	n:20000
Cons ci ratio: 7.168948e-02	ci left: 1.253682e-01	ci right 1.347397e-01	k: 2600	n:20000
KS ci ratio: 3.679439e-02	ci left: 3.553351e-01	ci right 3.687050e-01	k: 7240	n:20000
KCNQ3   20000 perm   7 sec   (2985 perm/sec)   p_kst 3.620000e-01   p_cons 1.300000e-01   p_joint 2.212000e-01

Outputting figure to mutsig2_images.part000000000089/KCNQ3.14_2679_20000_0.362_0.13_0.2212.png
                gene_name: KCNQ3
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 2 percent done.
KDM3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.063013e-01	ci left: 1.133015e-01	ci right 1.261210e-01	k: 1196	n:10000
Cons ci ratio: 1.994172e-01	ci left: 3.348089e-02	ci right 4.099178e-02	k: 371	n:10000
KS ci ratio: 1.846048e-02	ci left: 8.108033e-01	ci right 8.260108e-01	k: 8185	n:10000
KDM3B   10000 perm   2 sec   (4168 perm/sec)   p_kst 8.185000e-01   p_cons 3.710000e-02   p_joint 1.196000e-01

Joint ci ratio: 7.051004e-02	ci left: 1.291103e-01	ci right 1.385964e-01	k: 2676	n:20000
Cons ci ratio: 1.440565e-01	ci left: 3.312301e-02	ci right 3.831311e-02	k: 713	n:20000
KS ci ratio: 1.418360e-02	ci left: 7.868126e-01	ci right 7.981022e-01	k: 15850	n:20000
KDM3B   20000 perm   5 sec   (3717 perm/sec)   p_kst 7.925000e-01   p_cons 3.565000e-02   p_joint 1.338000e-01

Joint ci ratio: 5.921245e-02	ci left: 1.236795e-01	ci right 1.312595e-01	k: 3823	n:30000
Cons ci ratio: 1.142889e-01	ci left: 3.557287e-02	ci right 3.991724e-02	k: 1131	n:30000
KS ci ratio: 1.147040e-02	ci left: 7.910252e-01	ci right 8.001842e-01	k: 23869	n:30000
KDM3B   30000 perm   8 sec   (3574 perm/sec)   p_kst 7.956333e-01   p_cons 3.770000e-02   p_joint 1.274333e-01

Joint ci ratio: 5.219082e-02	ci left: 1.203648e-01	ci right 1.268399e-01	k: 4943	n:40000
Cons ci ratio: 9.912541e-02	ci left: 3.575694e-02	ci right 3.951056e-02	k: 1504	n:40000
KS ci ratio: 9.935414e-03	ci left: 7.915890e-01	ci right 7.995180e-01	k: 31823	n:40000
KDM3B   40000 perm   12 sec   (3397 perm/sec)   p_kst 7.955750e-01   p_cons 3.760000e-02   p_joint 1.235750e-01

Outputting figure to mutsig2_images.part000000000089/KDM3B.13_5382_40000_0.79558_0.0376_0.12358.png
                gene_name: KDM3B
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 3 percent done.
KCNMA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.711799e-02	ci left: 6.670292e-01	ci right 6.854680e-01	k: 6763	n:10000
KS ci ratio: 1.085878e-02	ci left: 9.235838e-01	ci right 9.337648e-01	k: 9288	n:10000
KCNMA1   10000 perm   2 sec   (4535 perm/sec)   p_kst 9.288000e-01   p_cons 6.763000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KCNMA1.12_3995_10000_0.9288_0.6763_1.png
                gene_name: KCNMA1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
KCNU1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.406905e-02	ci left: 7.173453e-01	ci right 7.349227e-01	k: 7262	n:10000
Cons ci ratio: 3.188335e-02	ci left: 5.921269e-01	ci right 6.114137e-01	k: 6018	n:10000
KS ci ratio: 3.885079e-02	ci left: 4.945505e-01	ci right 5.142470e-01	k: 5044	n:10000
KCNU1   10000 perm   2 sec   (4778 perm/sec)   p_kst 5.044000e-01   p_cons 6.018000e-01   p_joint 7.262000e-01

Outputting figure to mutsig2_images.part000000000089/KCNU1.12_3558_10000_0.5044_0.6018_0.7262.png
                gene_name: KCNU1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 6 percent done.
KDM5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.064358e-01	ci left: 3.119896e-02	ci right 3.847528e-02	k: 347	n:10000
Cons ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
KS ci ratio: 5.500759e-02	ci left: 3.274362e-01	ci right 3.460590e-01	k: 3367	n:10000
KDM5A   10000 perm   2 sec   (4009 perm/sec)   p_kst 3.367000e-01   p_cons 1.160000e-02   p_joint 3.470000e-02

Joint ci ratio: 1.736334e-01	ci left: 2.268901e-02	ci right 2.705062e-02	k: 496	n:20000
Cons ci ratio: 2.488949e-01	ci left: 1.072482e-02	ci right 1.381940e-02	k: 244	n:20000
KS ci ratio: 3.872706e-02	ci left: 3.321398e-01	ci right 3.453071e-01	k: 6774	n:20000
KDM5A   20000 perm   5 sec   (3680 perm/sec)   p_kst 3.387000e-01   p_cons 1.220000e-02   p_joint 2.480000e-02

Joint ci ratio: 1.329373e-01	ci left: 2.629135e-02	ci right 3.006743e-02	k: 844	n:30000
Cons ci ratio: 2.039269e-01	ci left: 1.092521e-02	ci right 1.343725e-02	k: 364	n:30000
KS ci ratio: 3.182985e-02	ci left: 3.304221e-01	ci right 3.411430e-01	k: 10073	n:30000
KDM5A   30000 perm   8 sec   (3618 perm/sec)   p_kst 3.357667e-01   p_cons 1.213333e-02   p_joint 2.813333e-02

Joint ci ratio: 1.291134e-01	ci left: 2.106890e-02	ci right 2.400098e-02	k: 900	n:40000
Cons ci ratio: 1.778438e-01	ci left: 1.093208e-02	ci right 1.308963e-02	k: 479	n:40000
KS ci ratio: 2.759329e-02	ci left: 3.306981e-01	ci right 3.399759e-01	k: 13413	n:40000
KDM5A   40000 perm   11 sec   (3566 perm/sec)   p_kst 3.353250e-01   p_cons 1.197500e-02   p_joint 2.250000e-02

Joint ci ratio: 1.235361e-01	ci left: 1.851926e-02	ci right 2.097695e-02	k: 986	n:50000
Cons ci ratio: 1.611196e-01	ci left: 1.075669e-02	ci right 1.266064e-02	k: 584	n:50000
KS ci ratio: 2.459352e-02	ci left: 3.327567e-01	ci right 3.410623e-01	k: 16845	n:50000
KDM5A   50000 perm   14 sec   (3526 perm/sec)   p_kst 3.369000e-01   p_cons 1.168000e-02   p_joint 1.972000e-02

Joint ci ratio: 9.522617e-02	ci left: 2.615719e-02	ci right 2.878878e-02	k: 1647	n:60000
Cons ci ratio: 1.470816e-01	ci left: 1.083887e-02	ci right 1.257551e-02	k: 701	n:60000
KS ci ratio: 2.207345e-02	ci left: 3.407135e-01	ci right 3.483349e-01	k: 20671	n:60000
KDM5A   60000 perm   17 sec   (3485 perm/sec)   p_kst 3.445167e-01   p_cons 1.168333e-02   p_joint 2.745000e-02

Joint ci ratio: 8.906351e-02	ci left: 2.572793e-02	ci right 2.814007e-02	k: 1884	n:70000
Cons ci ratio: 1.356693e-01	ci left: 1.098558e-02	ci right 1.259813e-02	k: 824	n:70000
KS ci ratio: 2.042786e-02	ci left: 3.411786e-01	ci right 3.482343e-01	k: 24129	n:70000
KDM5A   70000 perm   20 sec   (3431 perm/sec)   p_kst 3.447000e-01   p_cons 1.177143e-02   p_joint 2.691429e-02

Joint ci ratio: 7.258482e-02	ci left: 3.389678e-02	ci right 3.646207e-02	k: 2813	n:80000
Cons ci ratio: 1.271706e-01	ci left: 1.099057e-02	ci right 1.249515e-02	k: 938	n:80000
KS ci ratio: 1.909116e-02	ci left: 3.418176e-01	ci right 3.484186e-01	k: 27609	n:80000
KDM5A   80000 perm   24 sec   (3376 perm/sec)   p_kst 3.451125e-01   p_cons 1.172500e-02   p_joint 3.516250e-02

Joint ci ratio: 7.135598e-02	ci left: 3.128552e-02	ci right 3.361141e-02	k: 2919	n:90000
Cons ci ratio: 1.200920e-01	ci left: 1.099691e-02	ci right 1.241261e-02	k: 1052	n:90000
KS ci ratio: 1.802822e-02	ci left: 3.412840e-01	ci right 3.475038e-01	k: 30995	n:90000
KDM5A   90000 perm   27 sec   (3324 perm/sec)   p_kst 3.443889e-01   p_cons 1.168889e-02   p_joint 3.243333e-02

Joint ci ratio: 6.914412e-02	ci left: 3.006222e-02	ci right 3.222508e-02	k: 3113	n:100000
Cons ci ratio: 1.142757e-01	ci left: 1.096497e-02	ci right 1.230358e-02	k: 1162	n:100000
KS ci ratio: 1.710686e-02	ci left: 3.413447e-01	ci right 3.472444e-01	k: 34429	n:100000
KDM5A   100000 perm   30 sec   (3281 perm/sec)   p_kst 3.442900e-01   p_cons 1.162000e-02   p_joint 3.113000e-02

Joint ci ratio: 7.767868e-02	ci left: 2.174760e-02	ci right 2.351406e-02	k: 2488	n:110000
Cons ci ratio: 1.087129e-01	ci left: 1.104635e-02	ci right 1.232504e-02	k: 1284	n:110000
KS ci ratio: 1.631962e-02	ci left: 3.412377e-01	ci right 3.468614e-01	k: 37845	n:110000
KDM5A   110000 perm   34 sec   (3234 perm/sec)   p_kst 3.440455e-01   p_cons 1.167273e-02   p_joint 2.261818e-02

Joint ci ratio: 7.661406e-02	ci left: 2.053140e-02	ci right 2.217518e-02	k: 2561	n:120000
Cons ci ratio: 1.045314e-01	ci left: 1.097747e-02	ci right 1.219630e-02	k: 1389	n:120000
KS ci ratio: 1.562933e-02	ci left: 3.412287e-01	ci right 3.466122e-01	k: 41270	n:120000
KDM5A   120000 perm   38 sec   (3190 perm/sec)   p_kst 3.439167e-01   p_cons 1.157500e-02   p_joint 2.134167e-02

Joint ci ratio: 6.609316e-02	ci left: 2.547468e-02	ci right 2.722346e-02	k: 3424	n:130000
Cons ci ratio: 1.007981e-01	ci left: 1.091999e-02	ci right 1.208657e-02	k: 1494	n:130000
KS ci ratio: 1.501573e-02	ci left: 3.413482e-01	ci right 3.465203e-01	k: 44711	n:130000
KDM5A   130000 perm   41 sec   (3148 perm/sec)   p_kst 3.439308e-01   p_cons 1.149231e-02   p_joint 2.633846e-02

Joint ci ratio: 6.434104e-02	ci left: 2.499689e-02	ci right 2.666568e-02	k: 3615	n:140000
Cons ci ratio: 9.749971e-02	ci left: 1.085744e-02	ci right 1.197722e-02	k: 1597	n:140000
KS ci ratio: 1.447969e-02	ci left: 3.411263e-01	ci right 3.461088e-01	k: 48106	n:140000
KDM5A   140000 perm   45 sec   (3103 perm/sec)   p_kst 3.436143e-01   p_cons 1.140714e-02   p_joint 2.582143e-02

Outputting figure to mutsig2_images.part000000000089/KDM5A.12_5185_140000_0.34361_0.011407_0.025821.png
                gene_name: KDM5A
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 8 percent done.
KCNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.847290e-02	ci left: 8.106001e-01	ci right 8.258141e-01	k: 8183	n:10000
Cons ci ratio: 2.253522e-02	ci left: 7.430088e-01	ci right 7.600445e-01	k: 7516	n:10000
KS ci ratio: 2.540473e-02	ci left: 6.951461e-01	ci right 7.131348e-01	k: 7042	n:10000
KCNT2   10000 perm   2 sec   (4710 perm/sec)   p_kst 7.042000e-01   p_cons 7.516000e-01   p_joint 8.183000e-01

Outputting figure to mutsig2_images.part000000000089/KCNT2.11_3520_10000_0.7042_0.7516_0.8183.png
                gene_name: KCNT2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 10 percent done.
KCNQ5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.646584e-02	ci left: 4.060162e-01	ci right 4.254329e-01	k: 4157	n:10000
Cons ci ratio: 5.038155e-02	ci left: 3.674883e-01	ci right 3.865834e-01	k: 3770	n:10000
KS ci ratio: 6.124631e-02	ci left: 2.816139e-01	ci right 2.995082e-01	k: 2905	n:10000
KCNQ5   10000 perm   2 sec   (4623 perm/sec)   p_kst 2.905000e-01   p_cons 3.770000e-01   p_joint 4.157000e-01

Outputting figure to mutsig2_images.part000000000089/KCNQ5.10_2916_10000_0.2905_0.377_0.4157.png
                gene_name: KCNQ5
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 11 percent done.
KDM5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.862636e-02	ci left: 3.842059e-01	ci right 4.034560e-01	k: 3938	n:10000
Cons ci ratio: 8.093572e-02	ci left: 1.822537e-01	ci right 1.977273e-01	k: 1899	n:10000
KS ci ratio: 4.412626e-02	ci left: 4.312370e-01	ci right 4.507974e-01	k: 4410	n:10000
KDM5B   10000 perm   2 sec   (4418 perm/sec)   p_kst 4.410000e-01   p_cons 1.899000e-01   p_joint 3.938000e-01

Outputting figure to mutsig2_images.part000000000089/KDM5B.9_4743_10000_0.441_0.1899_0.3938.png
                gene_name: KDM5B
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 13 percent done.
KDM4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.578567e-02	ci left: 8.535544e-01	ci right 8.672349e-01	k: 8605	n:10000
Cons ci ratio: 5.419274e-02	ci left: 3.340900e-01	ci right 3.528013e-01	k: 3434	n:10000
KS ci ratio: 2.827121e-02	ci left: 6.484061e-01	ci right 6.671019e-01	k: 6578	n:10000
KDM4C   10000 perm   2 sec   (4447 perm/sec)   p_kst 6.578000e-01   p_cons 3.434000e-01   p_joint 8.605000e-01

Outputting figure to mutsig2_images.part000000000089/KDM4C.7_3497_10000_0.6578_0.3434_0.8605.png
                gene_name: KDM4C
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 14 percent done.
KCNJ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.465098e-01	ci left: 6.188659e-02	ci right 7.176758e-02	k: 667	n:10000
Cons ci ratio: 1.276362e-02	ci left: 8.982632e-01	ci right 9.099002e-01	k: 9042	n:10000
KS ci ratio: 2.086194e-01	ci left: 3.053425e-02	ci right 3.774046e-02	k: 340	n:10000
KCNJ3   10000 perm   2 sec   (5230 perm/sec)   p_kst 3.400000e-02   p_cons 9.042000e-01   p_joint 6.670000e-02

Joint ci ratio: 1.076732e-01	ci left: 5.879414e-02	ci right 6.553384e-02	k: 1242	n:20000
Cons ci ratio: 9.222918e-03	ci left: 8.961154e-01	ci right 9.044678e-01	k: 18007	n:20000
KS ci ratio: 1.501612e-01	ci left: 3.047099e-02	ci right 3.546599e-02	k: 658	n:20000
KCNJ3   20000 perm   4 sec   (4907 perm/sec)   p_kst 3.290000e-02   p_cons 9.003500e-01   p_joint 6.210000e-02

Joint ci ratio: 8.198932e-02	ci left: 6.788989e-02	ci right 7.372689e-02	k: 2123	n:30000
Cons ci ratio: 7.488788e-03	ci left: 8.979032e-01	ci right 9.046856e-01	k: 27040	n:30000
KS ci ratio: 1.239423e-01	ci left: 3.026347e-02	ci right 3.429444e-02	k: 967	n:30000
KCNJ3   30000 perm   6 sec   (4779 perm/sec)   p_kst 3.223333e-02   p_cons 9.013333e-01   p_joint 7.076667e-02

Joint ci ratio: 7.659830e-02	ci left: 5.909138e-02	ci right 6.382253e-02	k: 2457	n:40000
Cons ci ratio: 6.473768e-03	ci left: 8.986900e-01	ci right 9.045515e-01	k: 36066	n:40000
KS ci ratio: 1.086790e-01	ci left: 2.978556e-02	ci right 3.323290e-02	k: 1259	n:40000
KCNJ3   40000 perm   9 sec   (4677 perm/sec)   p_kst 3.147500e-02   p_cons 9.016500e-01   p_joint 6.142500e-02

Joint ci ratio: 7.739683e-02	ci left: 4.690814e-02	ci right 5.070446e-02	k: 2439	n:50000
Cons ci ratio: 5.812072e-03	ci left: 8.983286e-01	ci right 9.035847e-01	k: 45049	n:50000
KS ci ratio: 9.632510e-02	ci left: 3.051360e-02	ci right 3.362103e-02	k: 1602	n:50000
KCNJ3   50000 perm   11 sec   (4584 perm/sec)   p_kst 3.204000e-02   p_cons 9.009800e-01   p_joint 4.878000e-02

Outputting figure to mutsig2_images.part000000000089/KCNJ3.6_1518_50000_0.03204_0.90098_0.04878.png
                gene_name: KCNJ3
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.051 

Current progress: 16 percent done.
KCNK18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.531331e-02	ci left: 6.966589e-01	ci right 7.146211e-01	k: 7057	n:10000
Cons ci ratio: 2.140007e-02	ci left: 7.620288e-01	ci right 7.786135e-01	k: 7704	n:10000
KS ci ratio: 5.377486e-02	ci left: 3.375666e-01	ci right 3.563226e-01	k: 3469	n:10000
KCNK18   10000 perm   2 sec   (5853 perm/sec)   p_kst 3.469000e-01   p_cons 7.704000e-01   p_joint 7.057000e-01

Outputting figure to mutsig2_images.part000000000089/KCNK18.6_1167_10000_0.3469_0.7704_0.7057.png
                gene_name: KCNK18
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 17 percent done.
KCNK9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.773191e-02	ci left: 3.930670e-01	ci right 4.123897e-01	k: 4027	n:10000
Cons ci ratio: 3.969102e-02	ci left: 4.838540e-01	ci right 5.035497e-01	k: 4937	n:10000
KS ci ratio: 5.571689e-02	ci left: 3.217772e-01	ci right 3.403213e-01	k: 3310	n:10000
KCNK9   10000 perm   2 sec   (5944 perm/sec)   p_kst 3.310000e-01   p_cons 4.937000e-01   p_joint 4.027000e-01

Outputting figure to mutsig2_images.part000000000089/KCNK9.6_1133_10000_0.331_0.4937_0.4027.png
                gene_name: KCNK9
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 19 percent done.
KCNQ4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
Cons ci ratio: 4.125455e-02	ci left: 4.645717e-01	ci right 4.842432e-01	k: 4744	n:10000
KS ci ratio: 1.217655e-01	ci left: 8.815461e-02	ci right 9.968320e-02	k: 938	n:10000
KCNQ4   10000 perm   2 sec   (5427 perm/sec)   p_kst 9.380000e-02   p_cons 4.744000e-01   p_joint 1.277000e-01

Joint ci ratio: 6.229770e-02	ci left: 1.600772e-01	ci right 1.704203e-01	k: 3304	n:20000
Cons ci ratio: 2.954186e-02	ci left: 4.612146e-01	ci right 4.750947e-01	k: 9363	n:20000
KS ci ratio: 8.602708e-02	ci left: 8.998976e-02	ci right 9.812870e-02	k: 1880	n:20000
KCNQ4   20000 perm   4 sec   (4903 perm/sec)   p_kst 9.400000e-02   p_cons 4.681500e-01   p_joint 1.652000e-01

Outputting figure to mutsig2_images.part000000000089/KCNQ4.6_2144_20000_0.094_0.46815_0.1652.png
                gene_name: KCNQ4
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 21 percent done.
KCNS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.463711e-02	ci left: 5.517079e-01	ci right 5.712563e-01	k: 5615	n:10000
Cons ci ratio: 4.252495e-02	ci left: 4.494958e-01	ci right 4.691280e-01	k: 4593	n:10000
KS ci ratio: 4.593439e-02	ci left: 4.115964e-01	ci right 4.310494e-01	k: 4213	n:10000
KCNS2   10000 perm   2 sec   (5710 perm/sec)   p_kst 4.213000e-01   p_cons 4.593000e-01   p_joint 5.615000e-01

Outputting figure to mutsig2_images.part000000000089/KCNS2.6_1438_10000_0.4213_0.4593_0.5615.png
                gene_name: KCNS2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 22 percent done.
KCNV2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.633479e-02	ci left: 6.798232e-01	ci right 6.980666e-01	k: 6890	n:10000
Cons ci ratio: 2.345253e-02	ci left: 7.276467e-01	ci right 7.450155e-01	k: 7364	n:10000
KS ci ratio: 4.828189e-02	ci left: 3.875906e-01	ci right 4.068693e-01	k: 3972	n:10000
KCNV2   10000 perm   2 sec   (5493 perm/sec)   p_kst 3.972000e-01   p_cons 7.364000e-01   p_joint 6.890000e-01

Outputting figure to mutsig2_images.part000000000089/KCNV2.6_1646_10000_0.3972_0.7364_0.689.png
                gene_name: KCNV2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 24 percent done.
KDM3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.113205e-01	ci left: 7.153353e-03	ci right 1.094096e-02	k: 89	n:10000
Cons ci ratio: 2.157537e-02	ci left: 7.590934e-01	ci right 7.757506e-01	k: 7675	n:10000
KS ci ratio: 6.918207e-01	ci left: 2.107242e-03	ci right 4.397341e-03	k: 31	n:10000
KDM3A   10000 perm   2 sec   (4567 perm/sec)   p_kst 3.100000e-03   p_cons 7.675000e-01   p_joint 8.900000e-03

Joint ci ratio: 1.897147e-01	ci left: 1.891468e-02	ci right 2.292630e-02	k: 417	n:20000
Cons ci ratio: 1.529242e-02	ci left: 7.607246e-01	ci right 7.724978e-01	k: 15333	n:20000
KS ci ratio: 4.012173e-01	ci left: 3.799699e-03	ci right 5.748583e-03	k: 94	n:20000
KDM3A   20000 perm   5 sec   (4196 perm/sec)   p_kst 4.700000e-03   p_cons 7.666500e-01   p_joint 2.085000e-02

Joint ci ratio: 1.819649e-01	ci left: 1.384596e-02	ci right 1.664906e-02	k: 456	n:30000
Cons ci ratio: 1.333025e-02	ci left: 7.374450e-01	ci right 7.473747e-01	k: 22273	n:30000
KS ci ratio: 3.417378e-01	ci left: 3.621720e-03	ci right 5.143390e-03	k: 130	n:30000
KDM3A   30000 perm   7 sec   (4044 perm/sec)   p_kst 4.333333e-03   p_cons 7.424333e-01   p_joint 1.520000e-02

Joint ci ratio: 1.871401e-01	ci left: 9.834062e-03	ci right 1.188788e-02	k: 433	n:40000
Cons ci ratio: 1.152951e-02	ci left: 7.386122e-01	ci right 7.472025e-01	k: 29717	n:40000
KS ci ratio: 3.045377e-01	ci left: 3.497522e-03	ci right 4.776119e-03	k: 164	n:40000
KDM3A   40000 perm   10 sec   (3946 perm/sec)   p_kst 4.100000e-03   p_cons 7.429250e-01   p_joint 1.082500e-02

Joint ci ratio: 1.882227e-01	ci left: 7.790214e-03	ci right 9.427604e-03	k: 429	n:50000
Cons ci ratio: 1.031786e-02	ci left: 7.388644e-01	ci right 7.465474e-01	k: 37136	n:50000
KS ci ratio: 2.745683e-01	ci left: 3.502960e-03	ci right 4.635813e-03	k: 202	n:50000
KDM3A   50000 perm   13 sec   (3865 perm/sec)   p_kst 4.040000e-03   p_cons 7.427200e-01   p_joint 8.580000e-03

Joint ci ratio: 1.919901e-01	ci left: 6.237376e-03	ci right 7.577653e-03	k: 413	n:60000
Cons ci ratio: 9.428409e-03	ci left: 7.388139e-01	ci right 7.458293e-01	k: 44540	n:60000
KS ci ratio: 2.514764e-01	ci left: 3.526356e-03	ci right 4.555863e-03	k: 241	n:60000
KDM3A   60000 perm   16 sec   (3788 perm/sec)   p_kst 4.016667e-03   p_cons 7.423333e-01   p_joint 6.883333e-03

Joint ci ratio: 1.900188e-01	ci left: 5.468535e-03	ci right 6.630127e-03	k: 422	n:70000
Cons ci ratio: 8.733035e-03	ci left: 7.388994e-01	ci right 7.453948e-01	k: 51951	n:70000
KS ci ratio: 2.359184e-01	ci left: 3.465243e-03	ci right 4.405185e-03	k: 274	n:70000
KDM3A   70000 perm   19 sec   (3728 perm/sec)   p_kst 3.914286e-03   p_cons 7.421571e-01   p_joint 6.028571e-03

Joint ci ratio: 1.384227e-01	ci left: 9.237582e-03	ci right 1.062330e-02	k: 793	n:80000
Cons ci ratio: 8.153422e-03	ci left: 7.398440e-01	ci right 7.459134e-01	k: 59431	n:80000
KS ci ratio: 2.211363e-01	ci left: 3.479921e-03	ci right 4.356659e-03	k: 312	n:80000
KDM3A   80000 perm   22 sec   (3666 perm/sec)   p_kst 3.900000e-03   p_cons 7.428875e-01   p_joint 9.912500e-03

Joint ci ratio: 1.368573e-01	ci left: 8.414778e-03	ci right 9.661620e-03	k: 812	n:90000
Cons ci ratio: 7.696037e-03	ci left: 7.395742e-01	ci right 7.452990e-01	k: 66820	n:90000
KS ci ratio: 2.128180e-01	ci left: 3.355926e-03	ci right 4.165466e-03	k: 337	n:90000
KDM3A   90000 perm   25 sec   (3571 perm/sec)   p_kst 3.744444e-03   p_cons 7.424444e-01   p_joint 9.022222e-03

Joint ci ratio: 1.412771e-01	ci left: 7.099999e-03	ci right 8.188851e-03	k: 763	n:100000
Cons ci ratio: 7.316080e-03	ci left: 7.389350e-01	ci right 7.443709e-01	k: 74166	n:100000
KS ci ratio: 2.015083e-01	ci left: 3.390119e-03	ci right 4.159105e-03	k: 376	n:100000
KDM3A   100000 perm   28 sec   (3520 perm/sec)   p_kst 3.760000e-03   p_cons 7.416600e-01   p_joint 7.630000e-03

Joint ci ratio: 1.124465e-01	ci left: 1.031245e-02	ci right 1.154990e-02	k: 1201	n:110000
Cons ci ratio: 6.974385e-03	ci left: 7.391299e-01	ci right 7.443119e-01	k: 81590	n:110000
KS ci ratio: 1.911386e-01	ci left: 3.444996e-03	ci right 4.181546e-03	k: 418	n:110000
KDM3A   110000 perm   32 sec   (3470 perm/sec)   p_kst 3.800000e-03   p_cons 7.417273e-01   p_joint 1.091818e-02

Joint ci ratio: 1.145869e-01	ci left: 9.104593e-03	ci right 1.021930e-02	k: 1158	n:120000
Cons ci ratio: 6.681282e-03	ci left: 7.390213e-01	ci right 7.439837e-01	k: 88981	n:120000
KS ci ratio: 1.846491e-01	ci left: 3.396147e-03	ci right 4.094839e-03	k: 448	n:120000
KDM3A   120000 perm   35 sec   (3424 perm/sec)   p_kst 3.733333e-03   p_cons 7.415083e-01   p_joint 9.650000e-03

Joint ci ratio: 1.119328e-01	ci left: 8.822733e-03	ci right 9.876250e-03	k: 1214	n:130000
Cons ci ratio: 6.421499e-03	ci left: 7.389797e-01	ci right 7.437480e-01	k: 96378	n:130000
KS ci ratio: 1.776650e-01	ci left: 3.399274e-03	ci right 4.069316e-03	k: 484	n:130000
KDM3A   130000 perm   38 sec   (3379 perm/sec)   p_kst 3.723077e-03   p_cons 7.413692e-01   p_joint 9.338462e-03

Joint ci ratio: 9.438230e-02	ci left: 1.159663e-02	ci right 1.275228e-02	k: 1703	n:140000
Cons ci ratio: 6.181883e-03	ci left: 7.394416e-01	ci right 7.440340e-01	k: 103844	n:140000
KS ci ratio: 1.722495e-01	ci left: 3.368197e-03	ci right 4.009772e-03	k: 515	n:140000
KDM3A   140000 perm   42 sec   (3334 perm/sec)   p_kst 3.678571e-03   p_cons 7.417429e-01   p_joint 1.216429e-02

Joint ci ratio: 9.383793e-02	ci left: 1.096005e-02	ci right 1.204562e-02	k: 1724	n:150000
Cons ci ratio: 5.973351e-03	ci left: 7.394502e-01	ci right 7.438871e-01	k: 111251	n:150000
KS ci ratio: 1.666901e-01	ci left: 3.367089e-03	ci right 3.985674e-03	k: 550	n:150000
KDM3A   150000 perm   46 sec   (3289 perm/sec)   p_kst 3.666667e-03   p_cons 7.416733e-01   p_joint 1.149333e-02

Joint ci ratio: 9.208099e-02	ci left: 1.068399e-02	ci right 1.172133e-02	k: 1791	n:160000
Cons ci ratio: 5.782987e-03	ci left: 7.395666e-01	ci right 7.438621e-01	k: 118675	n:160000
KS ci ratio: 1.626141e-01	ci left: 3.324429e-03	ci right 3.918782e-03	k: 578	n:160000
KDM3A   160000 perm   49 sec   (3242 perm/sec)   p_kst 3.612500e-03   p_cons 7.417187e-01   p_joint 1.119375e-02

Joint ci ratio: 8.988234e-02	ci left: 1.056711e-02	ci right 1.156731e-02	k: 1880	n:170000
Cons ci ratio: 5.613956e-03	ci left: 7.393823e-01	ci right 7.435507e-01	k: 126050	n:170000
KS ci ratio: 1.577830e-01	ci left: 3.332151e-03	ci right 3.908510e-03	k: 614	n:170000
KDM3A   170000 perm   53 sec   (3202 perm/sec)   p_kst 3.611765e-03   p_cons 7.414706e-01   p_joint 1.105882e-02

Joint ci ratio: 9.387398e-02	ci left: 9.143825e-03	ci right 1.004985e-02	k: 1726	n:180000
Cons ci ratio: 5.453074e-03	ci left: 7.396323e-01	ci right 7.436821e-01	k: 133499	n:180000
KS ci ratio: 1.526540e-01	ci left: 3.371309e-03	ci right 3.933752e-03	k: 656	n:180000
KDM3A   180000 perm   57 sec   (3163 perm/sec)   p_kst 3.644444e-03   p_cons 7.416611e-01   p_joint 9.588889e-03

Joint ci ratio: 9.141948e-02	ci left: 9.145845e-03	ci right 1.002711e-02	k: 1820	n:190000
Cons ci ratio: 5.312124e-03	ci left: 7.393615e-01	ci right 7.433048e-01	k: 140854	n:190000
KS ci ratio: 1.491774e-01	ci left: 3.350866e-03	ci right 3.896031e-03	k: 687	n:190000
KDM3A   190000 perm   61 sec   (3126 perm/sec)   p_kst 3.615789e-03   p_cons 7.413368e-01   p_joint 9.578947e-03

Joint ci ratio: 8.907754e-02	ci left: 9.162610e-03	ci right 1.002169e-02	k: 1917	n:200000
Cons ci ratio: 5.172783e-03	ci left: 7.397707e-01	ci right 7.436123e-01	k: 148339	n:200000
KS ci ratio: 1.461321e-01	ci left: 3.322962e-03	ci right 3.851587e-03	k: 716	n:200000
KDM3A   200000 perm   65 sec   (3087 perm/sec)   p_kst 3.580000e-03   p_cons 7.416950e-01   p_joint 9.585000e-03

Joint ci ratio: 9.932893e-02	ci left: 6.996073e-03	ci right 7.731909e-03	k: 1545	n:210000
Cons ci ratio: 5.047489e-03	ci left: 7.398652e-01	ci right 7.436138e-01	k: 155766	n:210000
KS ci ratio: 1.447335e-01	ci left: 3.228955e-03	ci right 3.737283e-03	k: 730	n:210000
KDM3A   210000 perm   69 sec   (3050 perm/sec)   p_kst 3.476190e-03   p_cons 7.417429e-01   p_joint 7.357143e-03

Joint ci ratio: 9.703372e-02	ci left: 7.006176e-03	ci right 7.725078e-03	k: 1619	n:220000
Cons ci ratio: 4.929125e-03	ci left: 7.400888e-01	ci right 7.437503e-01	k: 163223	n:220000
KS ci ratio: 1.413882e-01	ci left: 3.235582e-03	ci right 3.732188e-03	k: 765	n:220000
KDM3A   220000 perm   73 sec   (3012 perm/sec)   p_kst 3.477273e-03   p_cons 7.419227e-01   p_joint 7.359091e-03

Joint ci ratio: 9.862506e-02	ci left: 6.485159e-03	ci right 7.162142e-03	k: 1568	n:230000
Cons ci ratio: 4.819369e-03	ci left: 7.402415e-01	ci right 7.438219e-01	k: 170668	n:230000
KS ci ratio: 1.376624e-01	ci left: 3.271143e-03	ci right 3.758892e-03	k: 807	n:230000
KDM3A   230000 perm   77 sec   (2979 perm/sec)   p_kst 3.508696e-03   p_cons 7.420348e-01   p_joint 6.817391e-03

Joint ci ratio: 9.256753e-02	ci left: 7.073206e-03	ci right 7.763770e-03	k: 1779	n:240000
Cons ci ratio: 4.612472e-03	ci left: 7.488556e-01	ci right 7.523217e-01	k: 180142	n:240000
KS ci ratio: 1.346142e-01	ci left: 3.283763e-03	ci right 3.761684e-03	k: 844	n:240000
KDM3A   240000 perm   82 sec   (2939 perm/sec)   p_kst 3.516667e-03   p_cons 7.505917e-01   p_joint 7.412500e-03

Joint ci ratio: 9.072605e-02	ci left: 7.075585e-03	ci right 7.751910e-03	k: 1852	n:250000
Cons ci ratio: 4.517732e-03	ci left: 7.490194e-01	ci right 7.524148e-01	k: 187680	n:250000
KS ci ratio: 1.318350e-01	ci left: 3.291614e-03	ci right 3.760012e-03	k: 880	n:250000
KDM3A   250000 perm   86 sec   (2908 perm/sec)   p_kst 3.520000e-03   p_cons 7.507200e-01   p_joint 7.408000e-03

Joint ci ratio: 9.012874e-02	ci left: 6.897398e-03	ci right 7.552120e-03	k: 1877	n:260000
Cons ci ratio: 4.428463e-03	ci left: 7.491828e-01	ci right 7.525116e-01	k: 195221	n:260000
KS ci ratio: 1.297905e-01	ci left: 3.269179e-03	ci right 3.726614e-03	k: 908	n:260000
KDM3A   260000 perm   91 sec   (2872 perm/sec)   p_kst 3.492308e-03   p_cons 7.508500e-01   p_joint 7.219231e-03

Joint ci ratio: 8.412462e-02	ci left: 7.642031e-03	ci right 8.316743e-03	k: 2153	n:270000
Cons ci ratio: 4.346347e-03	ci left: 7.491565e-01	ci right 7.524233e-01	k: 202714	n:270000
KS ci ratio: 1.264906e-01	ci left: 3.320183e-03	ci right 3.772058e-03	k: 956	n:270000
KDM3A   270000 perm   95 sec   (2842 perm/sec)   p_kst 3.540741e-03   p_cons 7.507926e-01   p_joint 7.974074e-03

Joint ci ratio: 8.241886e-02	ci left: 7.683843e-03	ci right 8.347829e-03	k: 2243	n:280000
Cons ci ratio: 4.270754e-03	ci left: 7.489465e-01	ci right 7.521554e-01	k: 210155	n:280000
KS ci ratio: 1.241764e-01	ci left: 3.326146e-03	ci right 3.769942e-03	k: 992	n:280000
KDM3A   280000 perm   100 sec   (2809 perm/sec)   p_kst 3.542857e-03   p_cons 7.505536e-01   p_joint 8.010714e-03

Joint ci ratio: 8.482505e-02	ci left: 7.000131e-03	ci right 7.623568e-03	k: 2119	n:290000
Cons ci ratio: 4.194679e-03	ci left: 7.491351e-01	ci right 7.522875e-01	k: 217707	n:290000
KS ci ratio: 1.216885e-01	ci left: 3.348486e-03	ci right 3.785666e-03	k: 1033	n:290000
KDM3A   290000 perm   104 sec   (2781 perm/sec)   p_kst 3.562069e-03   p_cons 7.507138e-01   p_joint 7.306897e-03

Joint ci ratio: 8.351648e-02	ci left: 6.985424e-03	ci right 7.597486e-03	k: 2186	n:300000
Cons ci ratio: 4.126017e-03	ci left: 7.489942e-01	ci right 7.520943e-01	k: 225164	n:300000
KS ci ratio: 1.194559e-01	ci left: 3.362950e-03	ci right 3.793394e-03	k: 1072	n:300000
KDM3A   300000 perm   109 sec   (2753 perm/sec)   p_kst 3.573333e-03   p_cons 7.505467e-01   p_joint 7.286667e-03

Joint ci ratio: 7.549278e-02	ci left: 8.296936e-03	ci right 8.951009e-03	k: 2672	n:310000
Cons ci ratio: 4.057191e-03	ci left: 7.491796e-01	ci right 7.522286e-01	k: 232719	n:310000
KS ci ratio: 1.173418e-01	ci left: 3.376550e-03	ci right 3.800555e-03	k: 1111	n:310000
KDM3A   310000 perm   114 sec   (2719 perm/sec)   p_kst 3.583871e-03   p_cons 7.507065e-01   p_joint 8.619355e-03

Joint ci ratio: 7.425264e-02	ci left: 8.313644e-03	ci right 8.957802e-03	k: 2762	n:320000
Cons ci ratio: 3.990996e-03	ci left: 7.494196e-01	ci right 7.524196e-01	k: 240295	n:320000
KS ci ratio: 1.152859e-01	ci left: 3.392398e-03	ci right 3.810421e-03	k: 1151	n:320000
KDM3A   320000 perm   119 sec   (2682 perm/sec)   p_kst 3.596875e-03   p_cons 7.509219e-01   p_joint 8.631250e-03

Joint ci ratio: 7.449389e-02	ci left: 8.011112e-03	ci right 8.633932e-03	k: 2745	n:330000
Cons ci ratio: 3.930164e-03	ci left: 7.494328e-01	ci right 7.523870e-01	k: 247801	n:330000
KS ci ratio: 1.136698e-01	ci left: 3.386734e-03	ci right 3.797817e-03	k: 1184	n:330000
KDM3A   330000 perm   124 sec   (2657 perm/sec)   p_kst 3.587879e-03   p_cons 7.509121e-01   p_joint 8.318182e-03

Joint ci ratio: 7.447575e-02	ci left: 7.781229e-03	ci right 8.386023e-03	k: 2747	n:340000
Cons ci ratio: 3.873736e-03	ci left: 7.492806e-01	ci right 7.521916e-01	k: 255251	n:340000
KS ci ratio: 1.118437e-01	ci left: 3.398596e-03	ci right 3.804055e-03	k: 1223	n:340000
KDM3A   340000 perm   129 sec   (2632 perm/sec)   p_kst 3.597059e-03   p_cons 7.507382e-01   p_joint 8.079412e-03

Joint ci ratio: 7.262930e-02	ci left: 7.954382e-03	ci right 8.556660e-03	k: 2888	n:350000
Cons ci ratio: 3.816374e-03	ci left: 7.494608e-01	ci right 7.523293e-01	k: 262814	n:350000
KS ci ratio: 1.103663e-01	ci left: 3.393158e-03	ci right 3.792273e-03	k: 1256	n:350000
KDM3A   350000 perm   134 sec   (2608 perm/sec)   p_kst 3.588571e-03   p_cons 7.508971e-01   p_joint 8.251429e-03

Joint ci ratio: 7.182755e-02	ci left: 7.910715e-03	ci right 8.502798e-03	k: 2953	n:360000
Cons ci ratio: 3.761067e-03	ci left: 7.496731e-01	ci right 7.525007e-01	k: 270392	n:360000
KS ci ratio: 1.086505e-01	ci left: 3.406973e-03	ci right 3.801084e-03	k: 1296	n:360000
KDM3A   360000 perm   139 sec   (2584 perm/sec)   p_kst 3.600000e-03   p_cons 7.510889e-01   p_joint 8.202778e-03

Joint ci ratio: 7.130222e-02	ci left: 7.813688e-03	ci right 8.394055e-03	k: 2997	n:370000
Cons ci ratio: 3.711044e-03	ci left: 7.495762e-01	ci right 7.523658e-01	k: 277860	n:370000
KS ci ratio: 1.071733e-01	ci left: 3.409564e-03	ci right 3.798274e-03	k: 1332	n:370000
KDM3A   370000 perm   145 sec   (2560 perm/sec)   p_kst 3.600000e-03   p_cons 7.509730e-01   p_joint 8.100000e-03

Joint ci ratio: 7.047356e-02	ci left: 7.791592e-03	ci right 8.363316e-03	k: 3068	n:380000
Cons ci ratio: 3.660826e-03	ci left: 7.497036e-01	ci right 7.524557e-01	k: 285411	n:380000
KS ci ratio: 1.059102e-01	ci left: 3.401804e-03	ci right 3.784774e-03	k: 1364	n:380000
KDM3A   380000 perm   150 sec   (2537 perm/sec)   p_kst 3.589474e-03   p_cons 7.510816e-01   p_joint 8.073684e-03

Joint ci ratio: 6.969551e-02	ci left: 7.765626e-03	ci right 8.328899e-03	k: 3137	n:390000
Cons ci ratio: 3.613261e-03	ci left: 7.497553e-01	ci right 7.524718e-01	k: 292935	n:390000
KS ci ratio: 1.048792e-01	ci left: 3.381982e-03	ci right 3.758786e-03	k: 1391	n:390000
KDM3A   390000 perm   155 sec   (2513 perm/sec)   p_kst 3.566667e-03   p_cons 7.511154e-01   p_joint 8.043590e-03

Joint ci ratio: 6.902951e-02	ci left: 7.721334e-03	ci right 8.275828e-03	k: 3198	n:400000
Cons ci ratio: 3.567813e-03	ci left: 7.497720e-01	ci right 7.524543e-01	k: 300446	n:400000
KS ci ratio: 1.036581e-01	ci left: 3.377781e-03	ci right 3.749468e-03	k: 1424	n:400000
KDM3A   400000 perm   161 sec   (2489 perm/sec)   p_kst 3.560000e-03   p_cons 7.511150e-01   p_joint 7.995000e-03

Joint ci ratio: 6.739925e-02	ci left: 7.907032e-03	ci right 8.460928e-03	k: 3354	n:410000
Cons ci ratio: 3.524153e-03	ci left: 7.497760e-01	ci right 7.524254e-01	k: 307952	n:410000
KS ci ratio: 1.022676e-01	ci left: 3.388069e-03	ci right 3.755587e-03	k: 1463	n:410000
KDM3A   410000 perm   166 sec   (2465 perm/sec)   p_kst 3.568293e-03   p_cons 7.511024e-01   p_joint 8.180488e-03

Joint ci ratio: 6.746671e-02	ci left: 7.704698e-03	ci right 8.244980e-03	k: 3348	n:420000
Cons ci ratio: 3.481414e-03	ci left: 7.498491e-01	ci right 7.524665e-01	k: 315487	n:420000
KS ci ratio: 1.008308e-01	ci left: 3.404863e-03	ci right 3.768705e-03	k: 1505	n:420000
KDM3A   420000 perm   172 sec   (2443 perm/sec)   p_kst 3.583333e-03   p_cons 7.511595e-01   p_joint 7.971429e-03

Joint ci ratio: 6.674374e-02	ci left: 7.692436e-03	ci right 8.225854e-03	k: 3421	n:430000
Cons ci ratio: 3.441135e-03	ci left: 7.498165e-01	ci right 7.524034e-01	k: 322978	n:430000
KS ci ratio: 9.977674e-02	ci left: 3.398231e-03	ci right 3.757347e-03	k: 1537	n:430000
KDM3A   430000 perm   178 sec   (2417 perm/sec)   p_kst 3.574419e-03   p_cons 7.511116e-01   p_joint 7.955814e-03

Outputting figure to mutsig2_images.part000000000089/KDM3A.6_4066_430000_0.0035744_0.75111_0.0079558.png
                gene_name: KDM3A
               theta_stop: 0.100 
                    nperm: 430000 
                     p_ks: 0.0036 
        ci_ks_bounds_left: 0.0034 
       ci_ks_bounds_right: 0.0038 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.0080 
     ci_joint_bounds_left: 0.0077 
    ci_joint_bounds_right: 0.0082 

Current progress: 25 percent done.
KCNJ16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.837333e-02	ci left: 1.570859e-01	ci right 1.717101e-01	k: 1643	n:10000
Cons ci ratio: 5.218770e-02	ci left: 3.511805e-01	ci right 3.701008e-01	k: 3606	n:10000
KS ci ratio: 1.127108e-01	ci left: 1.017865e-01	ci right 1.140430e-01	k: 1078	n:10000
KCNJ16   10000 perm   2 sec   (5497 perm/sec)   p_kst 1.078000e-01   p_cons 3.606000e-01   p_joint 1.643000e-01

Joint ci ratio: 6.176121e-02	ci left: 1.624471e-01	ci right 1.728497e-01	k: 3352	n:20000
Cons ci ratio: 3.456808e-02	ci left: 3.845274e-01	ci right 3.981042e-01	k: 7826	n:20000
KS ci ratio: 7.997037e-02	ci left: 1.029448e-01	ci right 1.115698e-01	k: 2144	n:20000
KCNJ16   20000 perm   4 sec   (4839 perm/sec)   p_kst 1.072000e-01   p_cons 3.913000e-01   p_joint 1.676000e-01

Outputting figure to mutsig2_images.part000000000089/KCNJ16.5_1261_20000_0.1072_0.3913_0.1676.png
                gene_name: KCNJ16
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 27 percent done.
KCNK13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.953620e-01	ci left: 3.490925e-02	ci right 4.256245e-02	k: 386	n:10000
Cons ci ratio: 1.418978e-01	ci left: 6.584842e-02	ci right 7.600325e-02	k: 708	n:10000
KS ci ratio: 1.062005e-01	ci left: 1.134968e-01	ci right 1.263255e-01	k: 1198	n:10000
KCNK13   10000 perm   2 sec   (5137 perm/sec)   p_kst 1.198000e-01   p_cons 7.080000e-02   p_joint 3.860000e-02

Joint ci ratio: 9.271124e-02	ci left: 7.823353e-02	ci right 8.588850e-02	k: 1640	n:20000
Cons ci ratio: 9.661324e-02	ci left: 7.236421e-02	ci right 7.975961e-02	k: 1520	n:20000
KS ci ratio: 7.522128e-02	ci left: 1.150350e-01	ci right 1.240759e-01	k: 2390	n:20000
KCNK13   20000 perm   4 sec   (4516 perm/sec)   p_kst 1.195000e-01   p_cons 7.600000e-02   p_joint 8.200000e-02

Outputting figure to mutsig2_images.part000000000089/KCNK13.5_1235_20000_0.1195_0.076_0.082.png
                gene_name: KCNK13
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.086 

Current progress: 29 percent done.
KCNK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.909943e-03	ci left: 9.351657e-01	ci right 9.445760e-01	k: 9400	n:10000
Cons ci ratio: 2.755871e-02	ci left: 6.598801e-01	ci right 6.784213e-01	k: 6692	n:10000
KS ci ratio: 3.277544e-02	ci left: 5.787803e-01	ci right 5.981681e-01	k: 5885	n:10000
KCNK2   10000 perm   2 sec   (5780 perm/sec)   p_kst 5.885000e-01   p_cons 6.692000e-01   p_joint 9.400000e-01

Outputting figure to mutsig2_images.part000000000089/KCNK2.5_1352_10000_0.5885_0.6692_0.94.png
                gene_name: KCNK2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.94 

Current progress: 30 percent done.
KCNK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.127937e-02	ci left: 4.642721e-01	ci right 4.839430e-01	k: 4741	n:10000
Cons ci ratio: 4.436868e-02	ci left: 4.285442e-01	ci right 4.480917e-01	k: 4383	n:10000
KS ci ratio: 4.971267e-02	ci left: 3.737560e-01	ci right 3.929120e-01	k: 3833	n:10000
KCNK5   10000 perm   2 sec   (6087 perm/sec)   p_kst 3.833000e-01   p_cons 4.383000e-01   p_joint 4.741000e-01

Outputting figure to mutsig2_images.part000000000089/KCNK5.5_1520_10000_0.3833_0.4383_0.4741.png
                gene_name: KCNK5
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 32 percent done.
KCTD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.349549e-02	ci left: 1.730058e-01	ci right 1.881808e-01	k: 1805	n:10000
Cons ci ratio: 2.064893e-02	ci left: 7.745865e-01	ci right 7.908485e-01	k: 7828	n:10000
KS ci ratio: 1.155520e-01	ci left: 9.720616e-02	ci right 1.092261e-01	k: 1031	n:10000
KCTD3   10000 perm   2 sec   (5368 perm/sec)   p_kst 1.031000e-01   p_cons 7.828000e-01   p_joint 1.805000e-01

Joint ci ratio: 6.415587e-02	ci left: 1.522299e-01	ci right 1.623700e-01	k: 3145	n:20000
Cons ci ratio: 1.532874e-02	ci left: 7.598673e-01	ci right 7.716553e-01	k: 15316	n:20000
KS ci ratio: 8.177543e-02	ci left: 9.882035e-02	ci right 1.072955e-01	k: 2060	n:20000
KCTD3   20000 perm   4 sec   (4817 perm/sec)   p_kst 1.030000e-01   p_cons 7.658000e-01   p_joint 1.572500e-01

Outputting figure to mutsig2_images.part000000000089/KCTD3.5_2520_20000_0.103_0.7658_0.15725.png
                gene_name: KCTD3
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 33 percent done.
KDM2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.323372e-02	ci left: 4.413126e-01	ci right 4.609159e-01	k: 4511	n:10000
Cons ci ratio: 6.597726e-02	ci left: 2.522150e-01	ci right 2.695245e-01	k: 2608	n:10000
KS ci ratio: 4.972318e-02	ci left: 3.736565e-01	ci right 3.928116e-01	k: 3832	n:10000
KDM2A   10000 perm   2 sec   (5091 perm/sec)   p_kst 3.832000e-01   p_cons 2.608000e-01   p_joint 4.511000e-01

Outputting figure to mutsig2_images.part000000000089/KDM2A.5_3569_10000_0.3832_0.2608_0.4511.png
                gene_name: KDM2A
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 35 percent done.
KDM2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.276542e-02	ci left: 4.467012e-01	ci right 4.663241e-01	k: 4565	n:10000
Cons ci ratio: 3.480620e-02	ci left: 5.493028e-01	ci right 5.688627e-01	k: 5591	n:10000
KS ci ratio: 4.572780e-02	ci left: 4.137890e-01	ci right 4.332556e-01	k: 4235	n:10000
KDM2B   10000 perm   2 sec   (4710 perm/sec)   p_kst 4.235000e-01   p_cons 5.591000e-01   p_joint 4.565000e-01

Outputting figure to mutsig2_images.part000000000089/KDM2B.5_4192_10000_0.4235_0.5591_0.4565.png
                gene_name: KDM2B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 37 percent done.
KCNJ15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.996134e-02	ci left: 7.860396e-01	ci right 8.019887e-01	k: 7941	n:10000
KS ci ratio: 1.920806e-02	ci left: 7.985170e-01	ci right 8.141041e-01	k: 8064	n:10000
KCNJ15   10000 perm   2 sec   (5769 perm/sec)   p_kst 8.064000e-01   p_cons 7.941000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KCNJ15.4_1132_10000_0.8064_0.7941_1.png
                gene_name: KCNJ15
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
KCNJ5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.357136e-01	ci left: 7.175179e-02	ci right 8.229618e-02	k: 769	n:10000
Cons ci ratio: 4.245653e-02	ci left: 4.502943e-01	ci right 4.699290e-01	k: 4601	n:10000
KS ci ratio: 1.420057e-01	ci left: 6.575174e-02	ci right 7.590000e-02	k: 707	n:10000
KCNJ5   10000 perm   2 sec   (6178 perm/sec)   p_kst 7.070000e-02   p_cons 4.601000e-01   p_joint 7.690000e-02

Joint ci ratio: 6.584042e-02	ci left: 1.455706e-01	ci right 1.555312e-01	k: 3010	n:20000
Cons ci ratio: 3.044721e-02	ci left: 4.462332e-01	ci right 4.600804e-01	k: 9063	n:20000
KS ci ratio: 1.009921e-01	ci left: 6.650160e-02	ci right 7.362401e-02	k: 1400	n:20000
KCNJ5   20000 perm   4 sec   (5552 perm/sec)   p_kst 7.000000e-02   p_cons 4.531500e-01   p_joint 1.505000e-01

Joint ci ratio: 5.298416e-02	ci left: 1.501963e-01	ci right 1.584041e-01	k: 4628	n:30000
Cons ci ratio: 2.486660e-02	ci left: 4.473885e-01	ci right 4.586872e-01	k: 13591	n:30000
KS ci ratio: 8.153578e-02	ci left: 6.860931e-02	ci right 7.447400e-02	k: 2145	n:30000
KCNJ5   30000 perm   6 sec   (5309 perm/sec)   p_kst 7.150000e-02   p_cons 4.530333e-01   p_joint 1.542667e-01

Outputting figure to mutsig2_images.part000000000089/KCNJ5.4_1268_30000_0.0715_0.45303_0.15427.png
                gene_name: KCNJ5
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 40 percent done.
KCNJ8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.681323e-02	ci left: 5.214615e-01	ci right 5.411203e-01	k: 5313	n:10000
KS ci ratio: 4.836201e-03	ci left: 9.825290e-01	ci right 9.873825e-01	k: 9851	n:10000
KCNJ8   10000 perm   2 sec   (6243 perm/sec)   p_kst 9.851000e-01   p_cons 5.313000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KCNJ8.4_1283_10000_0.9851_0.5313_1.png
                gene_name: KCNJ8
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
KCNK10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.243155e-02	ci left: 5.838973e-01	ci right 6.032481e-01	k: 5936	n:10000
Cons ci ratio: 5.972212e-02	ci left: 2.920188e-01	ci right 3.100972e-01	k: 3010	n:10000
KS ci ratio: 1.885064e-02	ci left: 8.044048e-01	ci right 8.198129e-01	k: 8122	n:10000
KCNK10   10000 perm   2 sec   (6034 perm/sec)   p_kst 8.122000e-01   p_cons 3.010000e-01   p_joint 5.936000e-01

Outputting figure to mutsig2_images.part000000000089/KCNK10.4_1757_10000_0.8122_0.301_0.5936.png
                gene_name: KCNK10
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 43 percent done.
KCNN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.777941e-02	ci left: 3.059998e-01	ci right 3.243080e-01	k: 3151	n:10000
Cons ci ratio: 3.352525e-02	ci left: 5.677472e-01	ci right 5.872076e-01	k: 5775	n:10000
KS ci ratio: 8.069985e-02	ci left: 1.831396e-01	ci right 1.986409e-01	k: 1908	n:10000
KCNN3   10000 perm   2 sec   (5856 perm/sec)   p_kst 1.908000e-01   p_cons 5.775000e-01   p_joint 3.151000e-01

Outputting figure to mutsig2_images.part000000000089/KCNN3.4_2250_10000_0.1908_0.5775_0.3151.png
                gene_name: KCNN3
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 44 percent done.
KCNRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.616784e-02	ci left: 5.302713e-01	ci right 5.499054e-01	k: 5401	n:10000
KS ci ratio: 2.899040e-02	ci left: 6.369381e-01	ci right 6.557766e-01	k: 6464	n:10000
KCNRG   10000 perm   2 sec   (6305 perm/sec)   p_kst 6.464000e-01   p_cons 5.401000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KCNRG.4_929_10000_0.6464_0.5401_1.png
                gene_name: KCNRG
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
KCNS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.757768e-02	ci left: 1.595411e-01	ci right 1.742535e-01	k: 1668	n:10000
KS ci ratio: 2.787669e-02	ci left: 6.547462e-01	ci right 6.733581e-01	k: 6641	n:10000
KCNS3   10000 perm   2 sec   (6068 perm/sec)   p_kst 6.641000e-01   p_cons 1.668000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KCNS3.4_1480_10000_0.6641_0.1668_1.png
                gene_name: KCNS3
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
KCTD18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.621708e-02	ci left: 1.638637e-01	ci right 1.787283e-01	k: 1712	n:10000
Cons ci ratio: 1.111015e-01	ci left: 1.045169e-01	ci right 1.169109e-01	k: 1106	n:10000
KS ci ratio: 4.998711e-02	ci left: 3.711691e-01	ci right 3.903004e-01	k: 3807	n:10000
KCTD18   10000 perm   2 sec   (6191 perm/sec)   p_kst 3.807000e-01   p_cons 1.106000e-01   p_joint 1.712000e-01

Joint ci ratio: 2.615838e-02	ci left: 5.219533e-01	ci right 5.358383e-01	k: 10578	n:20000
Cons ci ratio: 8.007495e-02	ci left: 1.026992e-01	ci right 1.113154e-01	k: 2139	n:20000
KS ci ratio: 3.606499e-02	ci left: 3.645981e-01	ci right 3.780394e-01	k: 7426	n:20000
KCTD18   20000 perm   4 sec   (5451 perm/sec)   p_kst 3.713000e-01   p_cons 1.069500e-01   p_joint 5.289000e-01

Outputting figure to mutsig2_images.part000000000089/KCTD18.4_1305_20000_0.3713_0.10695_0.5289.png
                gene_name: KCTD18
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 49 percent done.
KCTD20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.846382e-02	ci left: 3.857986e-01	ci right 4.050623e-01	k: 3954	n:10000
Cons ci ratio: 2.483886e-02	ci left: 7.045272e-01	ci right 7.223483e-01	k: 7135	n:10000
KS ci ratio: 7.130045e-02	ci left: 2.237558e-01	ci right 2.404006e-01	k: 2320	n:10000
KCTD20   10000 perm   2 sec   (5918 perm/sec)   p_kst 2.320000e-01   p_cons 7.135000e-01   p_joint 3.954000e-01

Outputting figure to mutsig2_images.part000000000089/KCTD20.4_1288_10000_0.232_0.7135_0.3954.png
                gene_name: KCTD20
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 51 percent done.
KCTD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.008344e-02	ci left: 6.197470e-01	ci right 6.387777e-01	k: 6293	n:10000
KS ci ratio: 3.129460e-02	ci left: 6.010623e-01	ci right 6.202732e-01	k: 6107	n:10000
KCTD7   10000 perm   2 sec   (6083 perm/sec)   p_kst 6.107000e-01   p_cons 6.293000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KCTD7.4_891_10000_0.6107_0.6293_1.png
                gene_name: KCTD7
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
KCTD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.229247e-01	ci left: 8.659902e-02	ci right 9.803975e-02	k: 922	n:10000
Cons ci ratio: 2.481456e-02	ci left: 7.049308e-01	ci right 7.227445e-01	k: 7139	n:10000
KS ci ratio: 2.055197e-01	ci left: 3.148396e-02	ci right 3.879009e-02	k: 350	n:10000
KCTD8   10000 perm   2 sec   (5600 perm/sec)   p_kst 3.500000e-02   p_cons 7.139000e-01   p_joint 9.220000e-02

Joint ci ratio: 7.340230e-02	ci left: 1.202003e-01	ci right 1.294091e-01	k: 2495	n:20000
Cons ci ratio: 1.755768e-02	ci left: 7.073292e-01	ci right 7.199086e-01	k: 14273	n:20000
KS ci ratio: 1.459755e-01	ci left: 3.225460e-02	ci right 3.738180e-02	k: 695	n:20000
KCTD8   20000 perm   4 sec   (5272 perm/sec)   p_kst 3.475000e-02   p_cons 7.136500e-01   p_joint 1.247500e-01

Joint ci ratio: 6.723751e-02	ci left: 9.833459e-02	ci right 1.052094e-01	k: 3052	n:30000
Cons ci ratio: 1.388613e-02	ci left: 7.214175e-01	ci right 7.315386e-01	k: 21795	n:30000
KS ci ratio: 1.197251e-01	ci left: 3.243089e-02	ci right 3.659322e-02	k: 1034	n:30000
KCTD8   30000 perm   6 sec   (5070 perm/sec)   p_kst 3.446667e-02   p_cons 7.265000e-01   p_joint 1.017333e-01

Joint ci ratio: 6.945997e-02	ci left: 7.118259e-02	ci right 7.632949e-02	k: 2949	n:40000
Cons ci ratio: 1.206663e-02	ci left: 7.207462e-01	ci right 7.295211e-01	k: 29006	n:40000
KS ci ratio: 1.041160e-01	ci left: 3.244034e-02	ci right 3.602770e-02	k: 1368	n:40000
KCTD8   40000 perm   8 sec   (4927 perm/sec)   p_kst 3.420000e-02   p_cons 7.251500e-01   p_joint 7.372500e-02

Joint ci ratio: 6.003027e-02	ci left: 7.621622e-02	ci right 8.095284e-02	k: 3928	n:50000
Cons ci ratio: 1.081088e-02	ci left: 7.205410e-01	ci right 7.283930e-01	k: 36224	n:50000
KS ci ratio: 9.240687e-02	ci left: 3.313241e-02	ci right 3.636190e-02	k: 1736	n:50000
KCTD8   50000 perm   10 sec   (4821 perm/sec)   p_kst 3.472000e-02   p_cons 7.244800e-01   p_joint 7.856000e-02

Outputting figure to mutsig2_images.part000000000089/KCTD8.4_1430_50000_0.03472_0.72448_0.07856.png
                gene_name: KCTD8
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.081 

Current progress: 54 percent done.
KDM4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.282482e-02	ci left: 7.381561e-01	ci right 7.553000e-01	k: 7468	n:10000
Cons ci ratio: 5.031728e-02	ci left: 3.680851e-01	ci right 3.871862e-01	k: 3776	n:10000
KS ci ratio: 3.018666e-02	ci left: 6.181391e-01	ci right 6.371865e-01	k: 6277	n:10000
KDM4A   10000 perm   2 sec   (4931 perm/sec)   p_kst 6.277000e-01   p_cons 3.776000e-01   p_joint 7.468000e-01

Outputting figure to mutsig2_images.part000000000089/KDM4A.4_3279_10000_0.6277_0.3776_0.7468.png
                gene_name: KDM4A
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 56 percent done.
KCNJ10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.377012e-02	ci left: 4.352269e-01	ci right 4.548052e-01	k: 4450	n:10000
Cons ci ratio: 8.141213e-02	ci left: 1.804823e-01	ci right 1.958998e-01	k: 1881	n:10000
KS ci ratio: 3.307401e-02	ci left: 5.743665e-01	ci right 5.937845e-01	k: 5841	n:10000
KCNJ10   10000 perm   2 sec   (6304 perm/sec)   p_kst 5.841000e-01   p_cons 1.881000e-01   p_joint 4.450000e-01

Outputting figure to mutsig2_images.part000000000089/KCNJ10.3_1144_10000_0.5841_0.1881_0.445.png
                gene_name: KCNJ10
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 57 percent done.
KCNJ12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.375241e-02	ci left: 4.354264e-01	ci right 4.550056e-01	k: 4452	n:10000
Cons ci ratio: 1.670282e-01	ci left: 4.782537e-02	ci right 5.663779e-02	k: 521	n:10000
KS ci ratio: 4.604759e-02	ci left: 4.104006e-01	ci right 4.298460e-01	k: 4201	n:10000
KCNJ12   10000 perm   2 sec   (6232 perm/sec)   p_kst 4.201000e-01   p_cons 5.210000e-02   p_joint 4.452000e-01

Joint ci ratio: 3.504069e-02	ci left: 3.780989e-01	ci right 3.916346e-01	k: 7697	n:20000
Cons ci ratio: 1.179902e-01	ci left: 4.920621e-02	ci right 5.542476e-02	k: 1045	n:20000
KS ci ratio: 3.262041e-02	ci left: 4.123986e-01	ci right 4.261249e-01	k: 8385	n:20000
KCNJ12   20000 perm   4 sec   (5505 perm/sec)   p_kst 4.192500e-01   p_cons 5.225000e-02   p_joint 3.848500e-01

Joint ci ratio: 3.405940e-02	ci left: 3.010530e-01	ci right 3.115179e-01	k: 9188	n:30000
Cons ci ratio: 9.519244e-02	ci left: 5.094770e-02	ci right 5.607254e-02	k: 1604	n:30000
KS ci ratio: 2.671473e-02	ci left: 4.122106e-01	ci right 4.234054e-01	k: 12534	n:30000
KCNJ12   30000 perm   6 sec   (5250 perm/sec)   p_kst 4.178000e-01   p_cons 5.346667e-02   p_joint 3.062667e-01

Outputting figure to mutsig2_images.part000000000089/KCNJ12.3_1306_30000_0.4178_0.053467_0.30627.png
                gene_name: KCNJ12
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 59 percent done.
KCNJ9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.533594e-02	ci left: 8.604938e-01	ci right 8.738915e-01	k: 8673	n:10000
KS ci ratio: 4.279990e-02	ci left: 4.463020e-01	ci right 4.659236e-01	k: 4561	n:10000
KCNJ9   10000 perm   2 sec   (6088 perm/sec)   p_kst 4.561000e-01   p_cons 8.673000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KCNJ9.3_1190_10000_0.4561_0.8673_1.png
                gene_name: KCNJ9
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
KCNK17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.353182e-02	ci left: 1.423679e-01	ci right 1.564370e-01	k: 1493	n:10000
Cons ci ratio: 1.161806e-01	ci left: 9.623212e-02	ci right 1.082007e-01	k: 1021	n:10000
KS ci ratio: 1.120715e-01	ci left: 1.028590e-01	ci right 1.151698e-01	k: 1089	n:10000
KCNK17   10000 perm   2 sec   (6393 perm/sec)   p_kst 1.089000e-01   p_cons 1.021000e-01   p_joint 1.493000e-01

Joint ci ratio: 1.185896e-01	ci left: 4.872026e-02	ci right 5.491086e-02	k: 1035	n:20000
Cons ci ratio: 8.249123e-02	ci left: 9.724970e-02	ci right 1.056666e-01	k: 2028	n:20000
KS ci ratio: 7.957616e-02	ci left: 1.038780e-01	ci right 1.125363e-01	k: 2163	n:20000
KCNK17   20000 perm   3 sec   (5719 perm/sec)   p_kst 1.081500e-01   p_cons 1.014000e-01   p_joint 5.175000e-02

Joint ci ratio: 7.777435e-02	ci left: 7.502245e-02	ci right 8.112623e-02	k: 2341	n:30000
Cons ci ratio: 7.194999e-02	ci left: 8.678475e-02	ci right 9.329489e-02	k: 2700	n:30000
KS ci ratio: 6.591140e-02	ci left: 1.019798e-01	ci right 1.089635e-01	k: 3163	n:30000
KCNK17   30000 perm   5 sec   (5502 perm/sec)   p_kst 1.054333e-01   p_cons 9.000000e-02   p_joint 7.803333e-02

Outputting figure to mutsig2_images.part000000000089/KCNK17.3_1151_30000_0.10543_0.09_0.078033.png
                gene_name: KCNK17
               theta_stop: 0.078 
                    nperm: 30000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.081 

Current progress: 62 percent done.
KCNMB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.085963e-02	ci left: 4.693659e-01	ci right 4.890462e-01	k: 4792	n:10000
Cons ci ratio: 2.172038e-02	ci left: 7.566645e-01	ci right 7.733809e-01	k: 7651	n:10000
KS ci ratio: 5.531683e-02	ci left: 3.249540e-01	ci right 3.435426e-01	k: 3342	n:10000
KCNMB4   10000 perm   2 sec   (6609 perm/sec)   p_kst 3.342000e-01   p_cons 7.651000e-01   p_joint 4.792000e-01

Outputting figure to mutsig2_images.part000000000089/KCNMB4.3_645_10000_0.3342_0.7651_0.4792.png
                gene_name: KCNMB4
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 63 percent done.
KCNN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.742813e-02	ci left: 6.619944e-01	ci right 6.805058e-01	k: 6713	n:10000
Cons ci ratio: 6.033790e-02	ci left: 2.877571e-01	ci right 3.057615e-01	k: 2967	n:10000
KS ci ratio: 3.567568e-02	ci left: 5.370809e-01	ci right 5.566918e-01	k: 5469	n:10000
KCNN2   10000 perm   2 sec   (5597 perm/sec)   p_kst 5.469000e-01   p_cons 2.967000e-01   p_joint 6.713000e-01

Outputting figure to mutsig2_images.part000000000089/KCNN2.3_1772_10000_0.5469_0.2967_0.6713.png
                gene_name: KCNN2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 65 percent done.
KCNQ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.042473e-02	ci left: 2.871625e-01	ci right 3.051564e-01	k: 2961	n:10000
Cons ci ratio: 5.332702e-02	ci left: 3.413419e-01	ci right 3.601452e-01	k: 3507	n:10000
KS ci ratio: 7.154130e-02	ci left: 2.225711e-01	ci right 2.391859e-01	k: 2308	n:10000
KCNQ2   10000 perm   2 sec   (5590 perm/sec)   p_kst 2.308000e-01   p_cons 3.507000e-01   p_joint 2.961000e-01

Outputting figure to mutsig2_images.part000000000089/KCNQ2.3_2751_10000_0.2308_0.3507_0.2961.png
                gene_name: KCNQ2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 67 percent done.
KCNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.176357e-02	ci left: 2.214853e-01	ci right 2.380724e-01	k: 2297	n:10000
Cons ci ratio: 7.295982e-02	ci left: 2.157611e-01	ci right 2.322000e-01	k: 2239	n:10000
KS ci ratio: 1.696151e-01	ci left: 4.638557e-02	ci right 5.507852e-02	k: 506	n:10000
KCNT1   10000 perm   2 sec   (4925 perm/sec)   p_kst 5.060000e-02   p_cons 2.239000e-01   p_joint 2.297000e-01

Joint ci ratio: 1.134813e-01	ci left: 5.309651e-02	ci right 5.953324e-02	k: 1125	n:20000
Cons ci ratio: 5.257494e-02	ci left: 2.117494e-01	ci right 2.232329e-01	k: 4349	n:20000
KS ci ratio: 1.208198e-01	ci left: 4.697153e-02	ci right 5.306014e-02	k: 999	n:20000
KCNT1   20000 perm   4 sec   (4538 perm/sec)   p_kst 4.995000e-02   p_cons 2.174500e-01   p_joint 5.625000e-02

Joint ci ratio: 7.087383e-02	ci left: 8.924436e-02	ci right 9.583480e-02	k: 2775	n:30000
Cons ci ratio: 4.289382e-02	ci left: 2.130741e-01	ci right 2.224473e-01	k: 6532	n:30000
KS ci ratio: 9.854601e-02	ci left: 4.762588e-02	ci right 5.259504e-02	k: 1502	n:30000
KCNT1   30000 perm   7 sec   (4169 perm/sec)   p_kst 5.006667e-02   p_cons 2.177333e-01   p_joint 9.250000e-02

Outputting figure to mutsig2_images.part000000000089/KCNT1.3_3832_30000_0.050067_0.21773_0.0925.png
                gene_name: KCNT1
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.096 

Current progress: 68 percent done.
KCNV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
Cons ci ratio: 2.511849e-02	ci left: 6.998865e-01	ci right 7.177916e-01	k: 7089	n:10000
KS ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
KCNV1   10000 perm   2 sec   (6111 perm/sec)   p_kst 4.380000e-02   p_cons 7.089000e-01   p_joint 2.157000e-01

Joint ci ratio: 5.848845e-02	ci left: 1.780085e-01	ci right 1.887837e-01	k: 3667	n:20000
Cons ci ratio: 1.734524e-02	ci left: 7.123114e-01	ci right 7.248250e-01	k: 14372	n:20000
KS ci ratio: 1.210749e-01	ci left: 4.677729e-02	ci right 5.285444e-02	k: 995	n:20000
KCNV1   20000 perm   4 sec   (5415 perm/sec)   p_kst 4.975000e-02   p_cons 7.186000e-01   p_joint 1.833500e-01

Joint ci ratio: 4.319827e-02	ci left: 2.106930e-01	ci right 2.200289e-01	k: 6460	n:30000
Cons ci ratio: 1.412159e-02	ci left: 7.146468e-01	ci right 7.248440e-01	k: 21593	n:30000
KS ci ratio: 9.830525e-02	ci left: 4.785375e-02	ci right 5.283379e-02	k: 1509	n:30000
KCNV1   30000 perm   6 sec   (5048 perm/sec)   p_kst 5.030000e-02   p_cons 7.197667e-01   p_joint 2.153333e-01

Outputting figure to mutsig2_images.part000000000089/KCNV1.3_1515_30000_0.0503_0.71977_0.21533.png
                gene_name: KCNV1
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 70 percent done.
KCTD16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.458556e-02	ci left: 4.261509e-01	ci right 4.456865e-01	k: 4359	n:10000
Cons ci ratio: 4.832224e-02	ci left: 3.871924e-01	ci right 4.064677e-01	k: 3968	n:10000
KS ci ratio: 6.051180e-02	ci left: 2.865679e-01	ci right 3.045513e-01	k: 2955	n:10000
KCTD16   10000 perm   1 sec   (6686 perm/sec)   p_kst 2.955000e-01   p_cons 3.968000e-01   p_joint 4.359000e-01

Outputting figure to mutsig2_images.part000000000089/KCTD16.3_1295_10000_0.2955_0.3968_0.4359.png
                gene_name: KCTD16
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 71 percent done.
KCTD19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.360009e-01	ci left: 7.146123e-02	ci right 8.198693e-02	k: 766	n:10000
Cons ci ratio: 1.442374e-02	ci left: 8.742881e-01	ci right 8.870892e-01	k: 8808	n:10000
KS ci ratio: 2.631913e-01	ci left: 1.884073e-02	ci right 2.464254e-02	k: 216	n:10000
KCTD19   10000 perm   2 sec   (5404 perm/sec)   p_kst 2.160000e-02   p_cons 8.808000e-01   p_joint 7.660000e-02

Joint ci ratio: 1.165281e-01	ci left: 5.042141e-02	ci right 5.670918e-02	k: 1070	n:20000
Cons ci ratio: 9.676201e-03	ci left: 8.870059e-01	ci right 8.956799e-01	k: 17828	n:20000
KS ci ratio: 1.872141e-01	ci left: 1.943921e-02	ci right 2.350157e-02	k: 428	n:20000
KCTD19   20000 perm   4 sec   (4504 perm/sec)   p_kst 2.140000e-02   p_cons 8.914000e-01   p_joint 5.350000e-02

Joint ci ratio: 5.985092e-02	ci left: 1.213432e-01	ci right 1.288629e-01	k: 3752	n:30000
Cons ci ratio: 8.100089e-03	ci left: 8.828226e-01	ci right 8.900357e-01	k: 26594	n:30000
KS ci ratio: 1.495117e-01	ci left: 2.072307e-02	ci right 2.410363e-02	k: 671	n:30000
KCTD19   30000 perm   8 sec   (3857 perm/sec)   p_kst 2.236667e-02   p_cons 8.864667e-01   p_joint 1.250667e-01

Joint ci ratio: 6.904393e-02	ci left: 7.199439e-02	ci right 7.716757e-02	k: 2982	n:40000
Cons ci ratio: 6.755690e-03	ci left: 8.907649e-01	ci right 8.968278e-01	k: 35753	n:40000
KS ci ratio: 1.319114e-01	ci left: 2.017348e-02	ci right 2.304655e-02	k: 863	n:40000
KCTD19   40000 perm   10 sec   (3834 perm/sec)   p_kst 2.157500e-02   p_cons 8.938250e-01   p_joint 7.455000e-02

Joint ci ratio: 6.444451e-02	ci left: 6.667528e-02	ci right 7.113493e-02	k: 3444	n:50000
Cons ci ratio: 6.048280e-03	ci left: 8.909048e-01	ci right 8.963294e-01	k: 44682	n:50000
KS ci ratio: 1.167213e-01	ci left: 2.077095e-02	ci right 2.336495e-02	k: 1102	n:50000
KCTD19   50000 perm   13 sec   (3872 perm/sec)   p_kst 2.204000e-02   p_cons 8.936400e-01   p_joint 6.888000e-02

Joint ci ratio: 6.511190e-02	ci left: 5.510880e-02	ci right 5.883420e-02	k: 3417	n:60000
Cons ci ratio: 5.524831e-03	ci left: 8.910212e-01	ci right 8.959740e-01	k: 53611	n:60000
KS ci ratio: 1.064120e-01	ci left: 2.093853e-02	ci right 2.330801e-02	k: 1326	n:60000
KCTD19   60000 perm   15 sec   (3879 perm/sec)   p_kst 2.210000e-02   p_cons 8.935167e-01   p_joint 5.695000e-02

Joint ci ratio: 5.935370e-02	ci left: 5.691350e-02	ci right 6.040891e-02	k: 4105	n:70000
Cons ci ratio: 5.110423e-03	ci left: 8.913788e-01	ci right 8.959599e-01	k: 62558	n:70000
KS ci ratio: 9.944757e-02	ci left: 2.063336e-02	ci right 2.280654e-02	k: 1519	n:70000
KCTD19   70000 perm   18 sec   (3867 perm/sec)   p_kst 2.170000e-02   p_cons 8.936857e-01   p_joint 5.864286e-02

Outputting figure to mutsig2_images.part000000000089/KCTD19.3_2845_70000_0.0217_0.89369_0.058643.png
                gene_name: KCTD19
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.060 

Current progress: 73 percent done.
KDELC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.592875e-01	ci left: 5.253552e-02	ci right 6.172460e-02	k: 570	n:10000
Cons ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
KS ci ratio: 4.981796e-02	ci left: 3.727610e-01	ci right 3.919076e-01	k: 3823	n:10000
KDELC1   10000 perm   2 sec   (6395 perm/sec)   p_kst 3.823000e-01   p_cons 1.170000e-02   p_joint 5.700000e-02

Joint ci ratio: 1.172236e-01	ci left: 4.983805e-02	ci right 5.609272e-02	k: 1058	n:20000
Cons ci ratio: 2.575473e-01	ci left: 9.975082e-03	ci right 1.296948e-02	k: 228	n:20000
KS ci ratio: 3.398387e-02	ci left: 3.926521e-01	ci right 4.062772e-01	k: 7989	n:20000
KDELC1   20000 perm   3 sec   (5737 perm/sec)   p_kst 3.994500e-01   p_cons 1.140000e-02   p_joint 5.290000e-02

Joint ci ratio: 1.155680e-01	ci left: 3.479506e-02	ci right 3.909522e-02	k: 1107	n:30000
Cons ci ratio: 2.129699e-01	ci left: 9.976869e-03	ci right 1.238586e-02	k: 334	n:30000
KS ci ratio: 2.771489e-02	ci left: 3.944829e-01	ci right 4.056032e-01	k: 12001	n:30000
KDELC1   30000 perm   6 sec   (5439 perm/sec)   p_kst 4.000333e-01   p_cons 1.113333e-02   p_joint 3.690000e-02

Joint ci ratio: 8.353800e-02	ci left: 4.999129e-02	ci right 5.437402e-02	k: 2086	n:40000
Cons ci ratio: 1.877974e-01	ci left: 9.762548e-03	ci right 1.180941e-02	k: 430	n:40000
KS ci ratio: 2.406020e-02	ci left: 3.940713e-01	ci right 4.036933e-01	k: 15955	n:40000
KDELC1   40000 perm   8 sec   (5255 perm/sec)   p_kst 3.988750e-01   p_cons 1.075000e-02   p_joint 5.215000e-02

Joint ci ratio: 8.674412e-02	ci left: 3.753531e-02	ci right 4.095845e-02	k: 1961	n:50000
Cons ci ratio: 1.695291e-01	ci left: 9.682541e-03	ci right 1.149495e-02	k: 528	n:50000
KS ci ratio: 2.152905e-02	ci left: 3.943843e-01	ci right 4.029875e-01	k: 19934	n:50000
KDELC1   50000 perm   10 sec   (5118 perm/sec)   p_kst 3.986800e-01   p_cons 1.056000e-02   p_joint 3.922000e-02

Joint ci ratio: 6.389189e-02	ci left: 5.714409e-02	ci right 6.093203e-02	k: 3541	n:60000
Cons ci ratio: 1.554779e-01	ci left: 9.667765e-03	ci right 1.131343e-02	k: 628	n:60000
KS ci ratio: 1.962117e-02	ci left: 3.955442e-01	ci right 4.033988e-01	k: 23968	n:60000
KDELC1   60000 perm   12 sec   (4999 perm/sec)   p_kst 3.994667e-01   p_cons 1.046667e-02   p_joint 5.901667e-02

Joint ci ratio: 6.717822e-02	ci left: 4.482531e-02	ci right 4.795529e-02	k: 3246	n:70000
Cons ci ratio: 1.451320e-01	ci left: 9.565265e-03	ci right 1.107574e-02	k: 721	n:70000
KS ci ratio: 1.814828e-02	ci left: 3.962966e-01	ci right 4.035688e-01	k: 27995	n:70000
KDELC1   70000 perm   14 sec   (4884 perm/sec)   p_kst 3.999286e-01   p_cons 1.030000e-02   p_joint 4.637143e-02

Joint ci ratio: 6.001710e-02	ci left: 4.910358e-02	ci right 5.215411e-02	k: 4049	n:80000
Cons ci ratio: 1.363562e-01	ci left: 9.527365e-03	ci right 1.093349e-02	k: 817	n:80000
KS ci ratio: 1.697944e-02	ci left: 3.964404e-01	ci right 4.032419e-01	k: 31987	n:80000
KDELC1   80000 perm   17 sec   (4776 perm/sec)   p_kst 3.998375e-01   p_cons 1.021250e-02   p_joint 5.061250e-02

Joint ci ratio: 5.134087e-02	ci left: 5.926938e-02	ci right 6.240345e-02	k: 5474	n:90000
Cons ci ratio: 1.279448e-01	ci left: 9.661398e-03	ci right 1.099267e-02	k: 928	n:90000
KS ci ratio: 1.599855e-02	ci left: 3.969303e-01	ci right 4.033429e-01	k: 36012	n:90000
KDELC1   90000 perm   19 sec   (4673 perm/sec)   p_kst 4.001333e-01   p_cons 1.031111e-02   p_joint 6.082222e-02

Joint ci ratio: 6.552770e-02	ci left: 3.341670e-02	ci right 3.569040e-02	k: 3454	n:100000
Cons ci ratio: 1.212737e-01	ci left: 9.712558e-03	ci right 1.097609e-02	k: 1033	n:100000
KS ci ratio: 1.528445e-02	ci left: 3.937358e-01	ci right 3.998102e-01	k: 39677	n:100000
KDELC1   100000 perm   22 sec   (4581 perm/sec)   p_kst 3.967700e-01   p_cons 1.033000e-02   p_joint 3.454000e-02

Joint ci ratio: 6.119315e-02	ci left: 3.486203e-02	ci right 3.707161e-02	k: 3955	n:110000
Cons ci ratio: 1.157020e-01	ci left: 9.729400e-03	ci right 1.093299e-02	k: 1135	n:110000
KS ci ratio: 1.456894e-02	ci left: 3.940160e-01	ci right 3.998076e-01	k: 43660	n:110000
KDELC1   110000 perm   24 sec   (4503 perm/sec)   p_kst 3.969091e-01   p_cons 1.031818e-02   p_joint 3.595455e-02

Joint ci ratio: 5.983333e-02	ci left: 3.349911e-02	ci right 3.557347e-02	k: 4143	n:120000
Cons ci ratio: 1.117031e-01	ci left: 9.590575e-03	ci right 1.073328e-02	k: 1218	n:120000
KS ci ratio: 1.395044e-02	ci left: 3.940802e-01	ci right 3.996247e-01	k: 47622	n:120000
KDELC1   120000 perm   27 sec   (4432 perm/sec)   p_kst 3.968500e-01   p_cons 1.015000e-02   p_joint 3.452500e-02

Joint ci ratio: 5.543587e-02	ci left: 3.601075e-02	ci right 3.807151e-02	k: 4814	n:130000
Cons ci ratio: 1.079246e-01	ci left: 9.503666e-03	ci right 1.059528e-02	k: 1305	n:130000
KS ci ratio: 1.341621e-02	ci left: 3.937241e-01	ci right 3.990497e-01	k: 51530	n:130000
KDELC1   130000 perm   30 sec   (4287 perm/sec)   p_kst 3.963846e-01   p_cons 1.003846e-02   p_joint 3.703077e-02

Joint ci ratio: 5.192647e-02	ci left: 3.809770e-02	ci right 4.013573e-02	k: 5475	n:140000
Cons ci ratio: 1.042033e-01	ci left: 9.485400e-03	ci right 1.053504e-02	k: 1400	n:140000
KS ci ratio: 1.291698e-02	ci left: 3.942359e-01	ci right 3.993684e-01	k: 55552	n:140000
KDELC1   140000 perm   33 sec   (4199 perm/sec)   p_kst 3.968000e-01   p_cons 1.000000e-02   p_joint 3.910714e-02

Joint ci ratio: 5.243575e-02	ci left: 3.497733e-02	ci right 3.686733e-02	k: 5387	n:150000
Cons ci ratio: 1.002683e-01	ci left: 9.580640e-03	ci right 1.059843e-02	k: 1512	n:150000
KS ci ratio: 1.247500e-02	ci left: 3.944760e-01	ci right 3.994346e-01	k: 59543	n:150000
KDELC1   150000 perm   36 sec   (4136 perm/sec)   p_kst 3.969533e-01   p_cons 1.008000e-02   p_joint 3.591333e-02

Joint ci ratio: 4.993930e-02	ci left: 3.615445e-02	ci right 3.801237e-02	k: 5932	n:160000
Cons ci ratio: 9.800465e-02	ci left: 9.414558e-03	ci right 1.039082e-02	k: 1583	n:160000
KS ci ratio: 1.208874e-02	ci left: 3.941643e-01	ci right 3.989644e-01	k: 63450	n:160000
KDELC1   160000 perm   39 sec   (4076 perm/sec)   p_kst 3.965625e-01   p_cons 9.893750e-03   p_joint 3.707500e-02

Outputting figure to mutsig2_images.part000000000089/KDELC1.3_1549_160000_0.39656_0.0098937_0.037075.png
                gene_name: KDELC1
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.0099 
      ci_cons_bounds_left: 0.0094 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.038 

Current progress: 75 percent done.
KDM1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.227196e-02	ci left: 2.748786e-01	ci right 2.926475e-01	k: 2837	n:10000
Cons ci ratio: 7.767058e-02	ci left: 1.950552e-01	ci right 2.109182e-01	k: 2029	n:10000
KS ci ratio: 6.318812e-02	ci left: 2.690368e-01	ci right 2.866928e-01	k: 2778	n:10000
KDM1A   10000 perm   2 sec   (5426 perm/sec)   p_kst 2.778000e-01   p_cons 2.029000e-01   p_joint 2.837000e-01

Outputting figure to mutsig2_images.part000000000089/KDM1A.3_2715_10000_0.2778_0.2029_0.2837.png
                gene_name: KDM1A
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 76 percent done.
KDM1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.153763e-03	ci left: 9.803783e-01	ci right 9.855349e-01	k: 9831	n:10000
Cons ci ratio: 2.959539e-02	ci left: 6.273859e-01	ci right 6.463343e-01	k: 6369	n:10000
KS ci ratio: 8.256589e-03	ci left: 9.534652e-01	ci right 9.614655e-01	k: 9576	n:10000
KDM1B   10000 perm   2 sec   (5900 perm/sec)   p_kst 9.576000e-01   p_cons 6.369000e-01   p_joint 9.831000e-01

Outputting figure to mutsig2_images.part000000000089/KDM1B.3_1837_10000_0.9576_0.6369_0.9831.png
                gene_name: KDM1B
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 78 percent done.
KCNJ11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.338029e-02	ci left: 8.895437e-01	ci right 9.016248e-01	k: 8957	n:10000
Cons ci ratio: 4.447696e-02	ci left: 4.273475e-01	ci right 4.468891e-01	k: 4371	n:10000
KS ci ratio: 1.751436e-01	ci left: 4.350916e-02	ci right 5.195681e-02	k: 476	n:10000
KCNJ11   10000 perm   2 sec   (5738 perm/sec)   p_kst 4.760000e-02   p_cons 4.371000e-01   p_joint 8.957000e-01

Joint ci ratio: 3.120469e-02	ci left: 4.341029e-01	ci right 4.479143e-01	k: 8820	n:20000
Cons ci ratio: 3.176785e-02	ci left: 4.253198e-01	ci right 4.391000e-01	k: 8644	n:20000
KS ci ratio: 1.246042e-01	ci left: 4.420494e-02	ci right 5.012760e-02	k: 942	n:20000
KCNJ11   20000 perm   4 sec   (5493 perm/sec)   p_kst 4.710000e-02   p_cons 4.322000e-01   p_joint 4.410000e-01

Joint ci ratio: 7.762224e-03	ci left: 8.912394e-01	ci right 8.982173e-01	k: 26843	n:30000
Cons ci ratio: 2.593382e-02	ci left: 4.266843e-01	ci right 4.379288e-01	k: 12969	n:30000
KS ci ratio: 1.019099e-01	ci left: 4.459990e-02	ci right 4.942165e-02	k: 1409	n:30000
KCNJ11   30000 perm   6 sec   (5369 perm/sec)   p_kst 4.696667e-02   p_cons 4.323000e-01   p_joint 8.947667e-01

Joint ci ratio: 6.734319e-03	ci left: 8.913724e-01	ci right 8.974202e-01	k: 35777	n:40000
Cons ci ratio: 2.261479e-02	ci left: 4.240677e-01	ci right 4.337927e-01	k: 17157	n:40000
KS ci ratio: 8.845457e-02	ci left: 4.472617e-02	ci right 4.888994e-02	k: 1871	n:40000
KCNJ11   40000 perm   8 sec   (5259 perm/sec)   p_kst 4.677500e-02   p_cons 4.289250e-01   p_joint 8.944250e-01

Outputting figure to mutsig2_images.part000000000089/KCNJ11.2_1177_40000_0.046775_0.42893_0.89443.png
                gene_name: KCNJ11
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 79 percent done.
KCNJ14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.040012e-02	ci left: 6.148232e-01	ci right 6.339043e-01	k: 6244	n:10000
Cons ci ratio: 6.561992e-02	ci left: 2.542921e-01	ci right 2.716462e-01	k: 2629	n:10000
KS ci ratio: 4.679252e-02	ci left: 4.026288e-01	ci right 4.220223e-01	k: 4123	n:10000
KCNJ14   10000 perm   2 sec   (6099 perm/sec)   p_kst 4.123000e-01   p_cons 2.629000e-01   p_joint 6.244000e-01

Outputting figure to mutsig2_images.part000000000089/KCNJ14.2_1319_10000_0.4123_0.2629_0.6244.png
                gene_name: KCNJ14
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 81 percent done.
KCNK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.492391e-02	ci left: 7.031147e-01	ci right 7.209616e-01	k: 7121	n:10000
KS ci ratio: 4.096618e-02	ci left: 4.680674e-01	ci right 4.877455e-01	k: 4779	n:10000
KCNK1   10000 perm   1 sec   (6832 perm/sec)   p_kst 4.779000e-01   p_cons 7.121000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KCNK1.2_1023_10000_0.4779_0.7121_1.png
                gene_name: KCNK1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
KCNK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.316556e-02	ci left: 1.433484e-01	ci right 1.574560e-01	k: 1503	n:10000
Cons ci ratio: 5.575464e-02	ci left: 3.214794e-01	ci right 3.400192e-01	k: 3307	n:10000
KS ci ratio: 1.255651e-01	ci left: 8.319799e-02	ci right 9.444288e-02	k: 887	n:10000
KCNK3   10000 perm   2 sec   (6533 perm/sec)   p_kst 8.870000e-02   p_cons 3.307000e-01   p_joint 1.503000e-01

Joint ci ratio: 4.572684e-03	ci left: 9.712310e-01	ci right 9.757299e-01	k: 19471	n:20000
Cons ci ratio: 3.940670e-02	ci left: 3.244285e-01	ci right 3.375207e-01	k: 6619	n:20000
KS ci ratio: 8.854373e-02	ci left: 8.528465e-02	ci right 9.323524e-02	k: 1784	n:20000
KCNK3   20000 perm   4 sec   (5582 perm/sec)   p_kst 8.920000e-02   p_cons 3.309500e-01   p_joint 9.735500e-01

Outputting figure to mutsig2_images.part000000000089/KCNK3.2_1193_20000_0.0892_0.33095_0.97355.png
                gene_name: KCNK3
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 84 percent done.
KCNK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.925322e-02	ci left: 3.781344e-01	ci right 3.973310e-01	k: 3877	n:10000
Cons ci ratio: 3.574771e-02	ci left: 5.360794e-01	ci right 5.556939e-01	k: 5459	n:10000
KS ci ratio: 1.429861e-01	ci left: 6.488166e-02	ci right 7.497062e-02	k: 698	n:10000
KCNK6   10000 perm   2 sec   (6590 perm/sec)   p_kst 6.980000e-02   p_cons 5.459000e-01   p_joint 3.877000e-01

Joint ci ratio: 1.415126e-02	ci left: 7.875700e-01	ci right 7.988446e-01	k: 15865	n:20000
Cons ci ratio: 2.514176e-02	ci left: 5.416716e-01	ci right 5.555142e-01	k: 10972	n:20000
KS ci ratio: 1.000357e-01	ci left: 6.772239e-02	ci right 7.490285e-02	k: 1425	n:20000
KCNK6   20000 perm   3 sec   (5801 perm/sec)   p_kst 7.125000e-02   p_cons 5.486000e-01   p_joint 7.932500e-01

Joint ci ratio: 4.286865e-02	ci left: 2.132725e-01	ci right 2.226489e-01	k: 6538	n:30000
Cons ci ratio: 2.054104e-02	ci left: 5.426474e-01	ci right 5.539432e-01	k: 16449	n:30000
KS ci ratio: 8.129125e-02	ci left: 6.900175e-02	ci right 7.488147e-02	k: 2157	n:30000
KCNK6   30000 perm   6 sec   (5371 perm/sec)   p_kst 7.190000e-02   p_cons 5.483000e-01   p_joint 2.179333e-01

Outputting figure to mutsig2_images.part000000000089/KCNK6.2_954_30000_0.0719_0.5483_0.21793.png
                gene_name: KCNK6
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 86 percent done.
KCNN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.533769e-02	ci left: 6.962555e-01	ci right 7.142248e-01	k: 7053	n:10000
Cons ci ratio: 3.662888e-02	ci left: 5.239639e-01	ci right 5.436164e-01	k: 5338	n:10000
KS ci ratio: 3.531015e-02	ci left: 5.421894e-01	ci right 5.617803e-01	k: 5520	n:10000
KCNN1   10000 perm   2 sec   (6311 perm/sec)   p_kst 5.520000e-01   p_cons 5.338000e-01   p_joint 7.053000e-01

Outputting figure to mutsig2_images.part000000000089/KCNN1.2_1668_10000_0.552_0.5338_0.7053.png
                gene_name: KCNN1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 87 percent done.
KCNQ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.851016e-02	ci left: 6.445828e-01	ci right 6.633275e-01	k: 6540	n:10000
Cons ci ratio: 6.139518e-02	ci left: 2.806233e-01	ci right 2.984994e-01	k: 2895	n:10000
KS ci ratio: 6.048275e-02	ci left: 2.867661e-01	ci right 3.047530e-01	k: 2957	n:10000
KCNQ1   10000 perm   2 sec   (5804 perm/sec)   p_kst 2.957000e-01   p_cons 2.895000e-01   p_joint 6.540000e-01

Outputting figure to mutsig2_images.part000000000089/KCNQ1.2_2104_10000_0.2957_0.2895_0.654.png
                gene_name: KCNQ1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 89 percent done.
KCTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
Cons ci ratio: 2.816585e-01	ci left: 1.632191e-02	ci right 2.176339e-02	k: 189	n:10000
KS ci ratio: 1.386620e-01	ci left: 6.884722e-02	ci right 7.920257e-02	k: 739	n:10000
KCTD1   10000 perm   2 sec   (5791 perm/sec)   p_kst 7.390000e-02   p_cons 1.890000e-02   p_joint 1.090000e-02

Joint ci ratio: 1.890231e-01	ci left: 1.905770e-02	ci right 2.308322e-02	k: 420	n:20000
Cons ci ratio: 2.044404e-01	ci left: 1.620275e-02	ci right 1.993924e-02	k: 360	n:20000
KS ci ratio: 9.932497e-02	ci left: 6.865040e-02	ci right 7.587455e-02	k: 1444	n:20000
KCTD1   20000 perm   4 sec   (5102 perm/sec)   p_kst 7.220000e-02   p_cons 1.800000e-02   p_joint 2.100000e-02

Joint ci ratio: 1.547767e-01	ci left: 1.931113e-02	ci right 2.258257e-02	k: 627	n:30000
Cons ci ratio: 1.699062e-01	ci left: 1.595059e-02	ci right 1.894391e-02	k: 522	n:30000
KS ci ratio: 8.000043e-02	ci left: 7.112796e-02	ci right 7.708817e-02	k: 2222	n:30000
KCTD1   30000 perm   6 sec   (4890 perm/sec)   p_kst 7.406667e-02   p_cons 1.740000e-02   p_joint 2.090000e-02

Joint ci ratio: 1.403644e-01	ci left: 1.778113e-02	ci right 2.048932e-02	k: 764	n:40000
Cons ci ratio: 1.473949e-01	ci left: 1.609305e-02	ci right 1.867770e-02	k: 694	n:40000
KS ci ratio: 6.883222e-02	ci left: 7.241263e-02	ci right 7.759927e-02	k: 2999	n:40000
KCTD1   40000 perm   9 sec   (4648 perm/sec)   p_kst 7.497500e-02   p_cons 1.735000e-02   p_joint 1.910000e-02

Joint ci ratio: 1.243743e-01	ci left: 1.826717e-02	ci right 2.070906e-02	k: 973	n:50000
Cons ci ratio: 1.323585e-01	ci left: 1.609782e-02	ci right 1.839872e-02	k: 861	n:50000
KS ci ratio: 6.162774e-02	ci left: 7.254831e-02	ci right 7.718119e-02	k: 3742	n:50000
KCTD1   50000 perm   11 sec   (4542 perm/sec)   p_kst 7.484000e-02   p_cons 1.722000e-02   p_joint 1.946000e-02

Joint ci ratio: 1.156653e-01	ci left: 1.769585e-02	ci right 1.988438e-02	k: 1126	n:60000
Cons ci ratio: 1.220569e-01	ci left: 1.586755e-02	ci right 1.794623e-02	k: 1013	n:60000
KS ci ratio: 5.622173e-02	ci left: 7.283892e-02	ci right 7.706896e-02	k: 4496	n:60000
KCTD1   60000 perm   13 sec   (4455 perm/sec)   p_kst 7.493333e-02   p_cons 1.688333e-02   p_joint 1.876667e-02

Joint ci ratio: 1.015860e-01	ci left: 1.976946e-02	ci right 2.189909e-02	k: 1457	n:70000
Cons ci ratio: 1.132955e-01	ci left: 1.586084e-02	ci right 1.777951e-02	k: 1176	n:70000
KS ci ratio: 5.178234e-02	ci left: 7.370859e-02	ci right 7.764096e-02	k: 5296	n:70000
KCTD1   70000 perm   16 sec   (4377 perm/sec)   p_kst 7.565714e-02   p_cons 1.680000e-02   p_joint 2.081429e-02

Joint ci ratio: 1.001240e-01	ci left: 1.785788e-02	ci right 1.975224e-02	k: 1503	n:80000
Cons ci ratio: 1.048791e-01	ci left: 1.626163e-02	ci right 1.807363e-02	k: 1372	n:80000
KS ci ratio: 4.852786e-02	ci left: 7.357953e-02	ci right 7.725133e-02	k: 6032	n:80000
KCTD1   80000 perm   19 sec   (4302 perm/sec)   p_kst 7.540000e-02   p_cons 1.715000e-02   p_joint 1.878750e-02

Joint ci ratio: 7.947104e-02	ci left: 2.527515e-02	ci right 2.737776e-02	k: 2368	n:90000
Cons ci ratio: 9.906474e-02	ci left: 1.625220e-02	ci right 1.795690e-02	k: 1538	n:90000
KS ci ratio: 4.576393e-02	ci left: 7.365016e-02	ci right 7.711060e-02	k: 6783	n:90000
KCTD1   90000 perm   21 sec   (4206 perm/sec)   p_kst 7.536667e-02   p_cons 1.708889e-02   p_joint 2.631111e-02

Outputting figure to mutsig2_images.part000000000089/KCTD1.2_2618_90000_0.075367_0.017089_0.026311.png
                gene_name: KCTD1
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 90 percent done.
KCTD21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.651176e-02	ci left: 2.491493e-01	ci right 2.663920e-01	k: 2577	n:10000
Cons ci ratio: 2.483886e-02	ci left: 7.045272e-01	ci right 7.223483e-01	k: 7135	n:10000
KS ci ratio: 9.476548e-02	ci left: 1.391331e-01	ci right 1.530738e-01	k: 1460	n:10000
KCTD21   10000 perm   2 sec   (6470 perm/sec)   p_kst 1.460000e-01   p_cons 7.135000e-01   p_joint 2.577000e-01

Outputting figure to mutsig2_images.part000000000089/KCTD21.2_787_10000_0.146_0.7135_0.2577.png
                gene_name: KCTD21
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 92 percent done.
KCTD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.342088e-01	ci left: 7.330186e-02	ci right 8.394515e-02	k: 785	n:10000
Cons ci ratio: 1.745679e-01	ci left: 4.379660e-02	ci right 5.226918e-02	k: 479	n:10000
KS ci ratio: 1.025873e-01	ci left: 1.208265e-01	ci right 1.339914e-01	k: 1273	n:10000
KCTD4   10000 perm   1 sec   (6840 perm/sec)   p_kst 1.273000e-01   p_cons 4.790000e-02   p_joint 7.850000e-02

Joint ci ratio: 1.001491e-01	ci left: 6.757588e-02	ci right 7.474940e-02	k: 1422	n:20000
Cons ci ratio: 1.212030e-01	ci left: 4.668018e-02	ci right 5.275159e-02	k: 993	n:20000
KS ci ratio: 7.200805e-02	ci left: 1.243836e-01	ci right 1.337245e-01	k: 2580	n:20000
KCTD4   20000 perm   3 sec   (6086 perm/sec)   p_kst 1.290000e-01   p_cons 4.965000e-02   p_joint 7.110000e-02

Joint ci ratio: 7.657496e-02	ci left: 7.724892e-02	ci right 8.343264e-02	k: 2409	n:30000
Cons ci ratio: 9.999010e-02	ci left: 4.629151e-02	ci right 5.119636e-02	k: 1461	n:30000
KS ci ratio: 5.925686e-02	ci left: 1.235150e-01	ci right 1.310907e-01	k: 3818	n:30000
KCTD4   30000 perm   5 sec   (5730 perm/sec)   p_kst 1.272667e-01   p_cons 4.870000e-02   p_joint 8.030000e-02

Outputting figure to mutsig2_images.part000000000089/KCTD4.2_784_30000_0.12727_0.0487_0.0803.png
                gene_name: KCTD4
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.083 

Current progress: 94 percent done.
KCTD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.996751e-02	ci left: 6.215560e-01	ci right 6.405676e-01	k: 6311	n:10000
Cons ci ratio: 1.693796e-02	ci left: 8.354145e-01	ci right 8.497853e-01	k: 8427	n:10000
KS ci ratio: 5.969375e-02	ci left: 2.922170e-01	ci right 3.102989e-01	k: 3012	n:10000
KCTD6   10000 perm   1 sec   (6918 perm/sec)   p_kst 3.012000e-01   p_cons 8.427000e-01   p_joint 6.311000e-01

Outputting figure to mutsig2_images.part000000000089/KCTD6.2_722_10000_0.3012_0.8427_0.6311.png
                gene_name: KCTD6
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 95 percent done.
KDELC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.448967e-02	ci left: 5.538124e-01	ci right 5.733505e-01	k: 5636	n:10000
KS ci ratio: 1.689324e-02	ci left: 8.361272e-01	ci right 8.504722e-01	k: 8434	n:10000
KDELC2   10000 perm   2 sec   (6039 perm/sec)   p_kst 8.434000e-01   p_cons 5.636000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KDELC2.2_1556_10000_0.8434_0.5636_1.png
                gene_name: KDELC2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
KDELR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.314463e-02	ci left: 7.327995e-01	ci right 7.500596e-01	k: 7415	n:10000
Cons ci ratio: 2.072783e-02	ci left: 7.732695e-01	ci right 7.895662e-01	k: 7815	n:10000
KS ci ratio: 6.879415e-02	ci left: 2.365957e-01	ci right 2.535531e-01	k: 2450	n:10000
KDELR1   10000 perm   1 sec   (6853 perm/sec)   p_kst 2.450000e-01   p_cons 7.815000e-01   p_joint 7.415000e-01

Outputting figure to mutsig2_images.part000000000089/KDELR1.2_659_10000_0.245_0.7815_0.7415.png
                gene_name: KDELR1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 98 percent done.
KDM4D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.268928e-02	ci left: 3.468072e-01	ci right 3.656766e-01	k: 3562	n:10000
KS ci ratio: 1.636594e-02	ci left: 8.444801e-01	ci right 8.585145e-01	k: 8516	n:10000
KDM4D   10000 perm   2 sec   (5993 perm/sec)   p_kst 8.516000e-01   p_cons 3.562000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000089/KDM4D.2_1576_10000_0.8516_0.3562_1.png
                gene_name: KDM4D
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000089
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 89 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1548>
Subject: Job 9893985: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1548>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000090> was used as the working directory.
Started at Sat Oct  6 00:15:27 2012
Results reported at Sat Oct  6 00:31:30 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000090.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000090.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 90  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000090.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1084.81 sec.
    Max Memory :      3599 MB
    Max Swap   :      5876 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
90
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 90
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 90: processing genes 8024 - 8114
Calculating significance of each gene.
Using projection method.
8024	KDM5C	5.276979e-01
In gene KDM5D the following bins exceed PROBCAP:
    COAD-AA-A01I	categ 6	N = 4691    n = 1	mu =   3.29e-07
8025	KDM5D	9.451971e-01
8026	KDM6A	9.952806e-01
In gene KDM6B the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 4610    n = 1	mu =   8.55e-07
8027	KDM6B	8.196289e-01
8028	KDR	4.698477e-01
8029	KDSR	4.407630e-01
8030	KEAP1	7.948236e-01
8031	KEL	4.982761e-02
8032	KERA	6.439242e-03
8033	KHDC1	5.247080e-01
8034	KHDRBS1	6.012810e-01
8035	KHDRBS2	4.202545e-01
8036	KHDRBS3	9.124995e-02
8037	KHK	8.006499e-01
8038	KHNYN	6.402259e-01
8039	KHSRP	5.729120e-01
8040	KIAA0020	4.374936e-01
8041	KIAA0090	8.755031e-01
8042	KIAA0100	6.434949e-01
8043	KIAA0101	1
8044	KIAA0141	3.012212e-01
8045	KIAA0146	2.119832e-01
8046	KIAA0174	1
8047	KIAA0182	9.980893e-01
8048	KIAA0195	5.839427e-01
8049	KIAA0196	6.397115e-01
8050	KIAA0226	9.586890e-01
8051	KIAA0232	5.575405e-01
8052	KIAA0240	3.655224e-01
8053	KIAA0247	1
8054	KIAA0284	9.813362e-01
8055	KIAA0317	9.879855e-01
8056	KIAA0319	1.011723e-01
8057	KIAA0319L	3.369113e-01
8058	KIAA0355	9.574231e-01
8059	KIAA0368	3.486231e-01
8060	KIAA0391	8.141554e-01
8061	KIAA0406	8.629001e-01
8062	KIAA0408	3.518786e-01
8063	KIAA0415	9.718073e-01
8064	KIAA0427	6.026922e-01
8065	KIAA0430	9.922352e-01
8066	KIAA0467	8.677788e-01
8067	KIAA0494	7.170045e-01
8068	KIAA0495	4.167579e-01
8069	KIAA0513	9.515493e-01
8070	KIAA0528	4.428967e-01
8071	KIAA0556	6.790868e-01
8072	KIAA0562	5.592588e-02
8073	KIAA0564	2.888213e-01
8074	KIAA0586	4.594086e-01
8075	KIAA0649	9.516450e-01
8076	KIAA0652	8.022241e-01
8077	KIAA0664	9.966612e-01
8078	KIAA0748	1.244119e-01
8079	KIAA0753	1.364284e-01
8080	KIAA0754	8.773914e-01
8081	KIAA0776	3.023715e-01
8082	KIAA0802	4.428685e-01
8083	KIAA0831	1
8084	KIAA0892	1
8085	KIAA0895	3.830815e-01
8086	KIAA0895L	5.870378e-01
8087	KIAA0907	6.006710e-01
8088	KIAA0913	9.578145e-01
8089	KIAA0922	4.966633e-01
8090	KIAA0947	7.535171e-01
8091	KIAA1009	6.035794e-01
8092	KIAA1012	1
8093	KIAA1024	2.217148e-01
8094	KIAA1033	5.008547e-01
8095	KIAA1045	1.914406e-01
8096	KIAA1109	6.806133e-01
8097	KIAA1143	5.232586e-01
8098	KIAA1147	8.195963e-01
8099	KIAA1161	9.970901e-01
8100	KIAA1191	1
8101	KIAA1199	2.403810e-01
8102	KIAA1210	7.302105e-01
8103	KIAA1211	9.602569e-01
8104	KIAA1217	2.905582e-01
8105	KIAA1244	9.689819e-01
8106	KIAA1257	5.311939e-01
8107	KIAA1267	1.643962e-01
8108	KIAA1274	9.368226e-01
8109	KIAA1279	6.963057e-01
8110	KIAA1310	1.666257e-01
8111	KIAA1324	5.097049e-01
8112	KIAA1324L	1.518193e-01
8113	KIAA1328	7.040292e-01
8114	KIAA1370	1.871222e-01
Done

Running MutSig 2:
Scatter job 90: processing genes 8024 - 8114
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KIAA1109
Processing conservation and coverage...
65% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.422405e-02	ci left: 5.576212e-01	ci right 5.771396e-01	k: 5674	n:10000
Cons ci ratio: 1.983313e-02	ci left: 7.881691e-01	ci right 8.040580e-01	k: 7962	n:10000
KS ci ratio: 4.187168e-02	ci left: 4.571824e-01	ci right 4.768369e-01	k: 4670	n:10000
KIAA1109   10000 perm   7 sec   (1506 perm/sec)   p_kst 4.670000e-01   p_cons 7.962000e-01   p_joint 5.674000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1109.30_15354_10000_0.467_0.7962_0.5674.png
                gene_name: KIAA1109
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 1 percent done.
KIAA0368
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.193266e-01	ci left: 9.155922e-02	ci right 1.032765e-01	k: 973	n:10000
Cons ci ratio: 1.055019e-01	ci left: 1.148645e-01	ci right 1.277571e-01	k: 1212	n:10000
KS ci ratio: 1.091704e-01	ci left: 1.079317e-01	ci right 1.204941e-01	k: 1141	n:10000
KIAA0368   10000 perm   3 sec   (3301 perm/sec)   p_kst 1.141000e-01   p_cons 1.212000e-01   p_joint 9.730000e-02

Joint ci ratio: 9.627114e-02	ci left: 7.285307e-02	ci right 8.027059e-02	k: 1530	n:20000
Cons ci ratio: 7.184833e-02	ci left: 1.248759e-01	ci right 1.342321e-01	k: 2590	n:20000
KS ci ratio: 7.607298e-02	ci left: 1.127238e-01	ci right 1.216878e-01	k: 2343	n:20000
KIAA0368   20000 perm   7 sec   (2933 perm/sec)   p_kst 1.171500e-01   p_cons 1.295000e-01   p_joint 7.650000e-02

Outputting figure to mutsig2_images.part000000000090/KIAA0368.13_6258_20000_0.11715_0.1295_0.0765.png
                gene_name: KIAA0368
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.080 

Current progress: 3 percent done.
KIAA1217
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.554271e-01	ci left: 5.513502e-02	ci right 6.452344e-02	k: 597	n:10000
Cons ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
KS ci ratio: 1.391093e-02	ci left: 8.818604e-01	ci right 8.943125e-01	k: 8882	n:10000
KIAA1217   10000 perm   3 sec   (3511 perm/sec)   p_kst 8.882000e-01   p_cons 1.200000e-02   p_joint 5.970000e-02

Joint ci ratio: 9.783690e-02	ci left: 7.065356e-02	ci right 7.797078e-02	k: 1485	n:20000
Cons ci ratio: 2.415168e-01	ci left: 1.142923e-02	ci right 1.461469e-02	k: 259	n:20000
KS ci ratio: 9.941446e-03	ci left: 8.815651e-01	ci right 8.904224e-01	k: 17721	n:20000
KIAA1217   20000 perm   6 sec   (3219 perm/sec)   p_kst 8.860500e-01   p_cons 1.295000e-02   p_joint 7.425000e-02

Joint ci ratio: 8.054963e-02	ci left: 7.021196e-02	ci right 7.613768e-02	k: 2194	n:30000
Cons ci ratio: 2.065198e-01	ci left: 1.064047e-02	ci right 1.312207e-02	k: 355	n:30000
KS ci ratio: 8.133577e-03	ci left: 8.819779e-01	ci right 8.892139e-01	k: 26569	n:30000
KIAA1217   30000 perm   10 sec   (3079 perm/sec)   p_kst 8.856333e-01   p_cons 1.183333e-02   p_joint 7.313333e-02

Joint ci ratio: 7.790678e-02	ci left: 5.720131e-02	ci right 6.186289e-02	k: 2380	n:40000
Cons ci ratio: 1.780316e-01	ci left: 1.090819e-02	ci right 1.306353e-02	k: 478	n:40000
KS ci ratio: 7.078756e-03	ci left: 8.814538e-01	ci right 8.877403e-01	k: 35385	n:40000
KIAA1217   40000 perm   13 sec   (3008 perm/sec)   p_kst 8.846250e-01   p_cons 1.195000e-02   p_joint 5.950000e-02

Joint ci ratio: 5.801099e-02	ci left: 8.124733e-02	ci right 8.612113e-02	k: 4183	n:50000
Cons ci ratio: 1.573522e-01	ci left: 1.129461e-02	ci right 1.324263e-02	k: 612	n:50000
KS ci ratio: 6.337716e-03	ci left: 8.815852e-01	ci right 8.872101e-01	k: 44221	n:50000
KIAA1217   50000 perm   17 sec   (2931 perm/sec)   p_kst 8.844200e-01   p_cons 1.224000e-02   p_joint 8.366000e-02

Joint ci ratio: 6.191857e-02	ci left: 6.067455e-02	ci right 6.456789e-02	k: 3756	n:60000
Cons ci ratio: 1.477217e-01	ci left: 1.074252e-02	ci right 1.247187e-02	k: 695	n:60000
KS ci ratio: 5.789339e-03	ci left: 8.816968e-01	ci right 8.868326e-01	k: 53057	n:60000
KIAA1217   60000 perm   21 sec   (2903 perm/sec)   p_kst 8.842833e-01   p_cons 1.158333e-02   p_joint 6.260000e-02

Joint ci ratio: 5.529520e-02	ci left: 6.513047e-02	ci right 6.884837e-02	k: 4688	n:70000
Cons ci ratio: 1.375371e-01	ci left: 1.068192e-02	ci right 1.227325e-02	k: 802	n:70000
KS ci ratio: 5.367275e-03	ci left: 8.816047e-01	ci right 8.863634e-01	k: 61880	n:70000
KIAA1217   70000 perm   25 sec   (2854 perm/sec)   p_kst 8.840000e-01   p_cons 1.145714e-02   p_joint 6.697143e-02

Joint ci ratio: 5.067700e-02	ci left: 6.782131e-02	ci right 7.135998e-02	k: 5566	n:80000
Cons ci ratio: 1.266936e-01	ci left: 1.107532e-02	ci right 1.258539e-02	k: 945	n:80000
KS ci ratio: 5.024277e-03	ci left: 8.816096e-01	ci right 8.860626e-01	k: 70708	n:80000
KIAA1217   80000 perm   28 sec   (2821 perm/sec)   p_kst 8.838500e-01   p_cons 1.181250e-02   p_joint 6.957500e-02

Joint ci ratio: 4.493468e-02	ci left: 7.621206e-02	ci right 7.972631e-02	k: 7016	n:90000
Cons ci ratio: 1.196901e-01	ci left: 1.107238e-02	ci right 1.249268e-02	k: 1059	n:90000
KS ci ratio: 4.732176e-03	ci left: 8.819460e-01	ci right 8.861404e-01	k: 79565	n:90000
KIAA1217   90000 perm   32 sec   (2775 perm/sec)   p_kst 8.840556e-01   p_cons 1.176667e-02   p_joint 7.795556e-02

Joint ci ratio: 3.903689e-02	ci left: 8.980909e-02	ci right 9.339464e-02	k: 9159	n:100000
Cons ci ratio: 1.133426e-01	ci left: 1.114962e-02	ci right 1.249892e-02	k: 1181	n:100000
KS ci ratio: 4.615085e-03	ci left: 8.762275e-01	ci right 8.802906e-01	k: 87827	n:100000
KIAA1217   100000 perm   37 sec   (2736 perm/sec)   p_kst 8.782700e-01   p_cons 1.181000e-02   p_joint 9.159000e-02

Joint ci ratio: 3.981589e-02	ci left: 7.936717e-02	ci right 8.260042e-02	k: 8907	n:110000
Cons ci ratio: 1.178704e-01	ci left: 9.367458e-03	ci right 1.054950e-02	k: 1094	n:110000
KS ci ratio: 4.409595e-03	ci left: 8.758683e-01	ci right 8.797481e-01	k: 96560	n:110000
KIAA1217   110000 perm   41 sec   (2715 perm/sec)   p_kst 8.778182e-01   p_cons 9.945455e-03   p_joint 8.097273e-02

Joint ci ratio: 3.779134e-02	ci left: 8.072624e-02	ci right 8.384399e-02	k: 9873	n:120000
Cons ci ratio: 1.122627e-01	ci left: 9.493350e-03	ci right 1.063052e-02	k: 1206	n:120000
KS ci ratio: 4.225497e-03	ci left: 8.757659e-01	ci right 8.794825e-01	k: 105316	n:120000
KIAA1217   120000 perm   45 sec   (2692 perm/sec)   p_kst 8.776333e-01   p_cons 1.005000e-02   p_joint 8.227500e-02

Joint ci ratio: 3.492649e-02	ci left: 8.679352e-02	ci right 8.988640e-02	k: 11483	n:130000
Cons ci ratio: 1.085561e-01	ci left: 9.391376e-03	ci right 1.047681e-02	k: 1290	n:130000
KS ci ratio: 4.062676e-03	ci left: 8.756823e-01	ci right 8.792547e-01	k: 114072	n:130000
KIAA1217   130000 perm   49 sec   (2665 perm/sec)   p_kst 8.774769e-01   p_cons 9.923077e-03   p_joint 8.833077e-02

Joint ci ratio: 3.693162e-02	ci left: 7.310145e-02	ci right 7.585906e-02	k: 10426	n:140000
Cons ci ratio: 1.048095e-01	ci left: 9.374073e-03	ci right 1.041780e-02	k: 1384	n:140000
KS ci ratio: 3.722099e-03	ci left: 8.862645e-01	ci right 8.895765e-01	k: 124310	n:140000
KIAA1217   140000 perm   53 sec   (2641 perm/sec)   p_kst 8.879286e-01   p_cons 9.885714e-03   p_joint 7.447143e-02

Joint ci ratio: 3.654325e-02	ci left: 6.994325e-02	ci right 7.255336e-02	k: 10686	n:150000
Cons ci ratio: 1.012532e-01	ci left: 9.392133e-03	ci right 1.040028e-02	k: 1483	n:150000
KS ci ratio: 3.598569e-03	ci left: 8.861719e-01	ci right 8.893731e-01	k: 133167	n:150000
KIAA1217   150000 perm   57 sec   (2616 perm/sec)   p_kst 8.877800e-01   p_cons 9.886667e-03   p_joint 7.124000e-02

Joint ci ratio: 3.594008e-02	ci left: 6.796112e-02	ci right 7.045452e-02	k: 11072	n:160000
Cons ci ratio: 9.763182e-02	ci left: 9.487740e-03	ci right 1.046764e-02	k: 1595	n:160000
KS ci ratio: 3.483946e-03	ci left: 8.862434e-01	ci right 8.893426e-01	k: 142048	n:160000
KIAA1217   160000 perm   62 sec   (2589 perm/sec)   p_kst 8.878000e-01   p_cons 9.968750e-03   p_joint 6.920000e-02

Outputting figure to mutsig2_images.part000000000090/KIAA1217.13_5916_160000_0.8878_0.0099688_0.0692.png
                gene_name: KIAA1217
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.0100 
      ci_cons_bounds_left: 0.0095 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.070 

Current progress: 4 percent done.
KIAA0922
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.183877e-02	ci left: 3.542622e-01	ci right 3.732173e-01	k: 3637	n:10000
Cons ci ratio: 2.947396e-02	ci left: 6.292960e-01	ci right 6.482231e-01	k: 6388	n:10000
KS ci ratio: 7.054868e-02	ci left: 2.275079e-01	ci right 2.442463e-01	k: 2358	n:10000
KIAA0922   10000 perm   3 sec   (3834 perm/sec)   p_kst 2.358000e-01   p_cons 6.388000e-01   p_joint 3.637000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0922.12_4973_10000_0.2358_0.6388_0.3637.png
                gene_name: KIAA0922
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 6 percent done.
KIAA0556
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.894940e-02	ci left: 8.027803e-01	ci right 8.182384e-01	k: 8106	n:10000
Cons ci ratio: 3.801281e-02	ci left: 5.054515e-01	ci right 5.251396e-01	k: 5153	n:10000
KS ci ratio: 2.586887e-02	ci left: 6.874832e-01	ci right 7.056022e-01	k: 6966	n:10000
KIAA0556   10000 perm   3 sec   (3793 perm/sec)   p_kst 6.966000e-01   p_cons 5.153000e-01   p_joint 8.106000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0556.11_4969_10000_0.6966_0.5153_0.8106.png
                gene_name: KIAA0556
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 7 percent done.
KIAA0564
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.312912e-02	ci left: 1.434464e-01	ci right 1.575578e-01	k: 1504	n:10000
Cons ci ratio: 2.255332e-02	ci left: 7.427054e-01	ci right 7.597480e-01	k: 7513	n:10000
KS ci ratio: 1.269826e-01	ci left: 8.144990e-02	ci right 9.259206e-02	k: 869	n:10000
KIAA0564   10000 perm   3 sec   (3147 perm/sec)   p_kst 8.690000e-02   p_cons 7.513000e-01   p_joint 1.504000e-01

Joint ci ratio: 5.881266e-02	ci left: 1.763775e-01	ci right 1.871151e-01	k: 3634	n:20000
Cons ci ratio: 1.590933e-02	ci left: 7.461552e-01	ci right 7.581714e-01	k: 15044	n:20000
KS ci ratio: 8.741912e-02	ci left: 8.734272e-02	ci right 9.537654e-02	k: 1826	n:20000
KIAA0564   20000 perm   7 sec   (2942 perm/sec)   p_kst 9.130000e-02   p_cons 7.522000e-01   p_joint 1.817000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0564.11_5902_20000_0.0913_0.7522_0.1817.png
                gene_name: KIAA0564
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 8 percent done.
KIAA0802
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.840600e-02	ci left: 2.386708e-01	ci right 2.556767e-01	k: 2471	n:10000
Cons ci ratio: 6.717872e-02	ci left: 2.453921e-01	ci right 2.625515e-01	k: 2539	n:10000
KS ci ratio: 8.971560e-02	ci left: 1.530607e-01	ci right 1.675377e-01	k: 1602	n:10000
KIAA0802   10000 perm   3 sec   (3741 perm/sec)   p_kst 1.602000e-01   p_cons 2.539000e-01   p_joint 2.471000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0802.11_4817_10000_0.1602_0.2539_0.2471.png
                gene_name: KIAA0802
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 10 percent done.
KIAA0947
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.980390e-01	ci left: 3.395684e-02	ci right 4.151552e-02	k: 376	n:10000
Cons ci ratio: 5.474812e-01	ci left: 3.713306e-03	ci right 6.586626e-03	k: 50	n:10000
KS ci ratio: 3.780034e-02	ci left: 5.082525e-01	ci right 5.279369e-01	k: 5181	n:10000
KIAA0947   10000 perm   3 sec   (3249 perm/sec)   p_kst 5.181000e-01   p_cons 5.000000e-03   p_joint 3.760000e-02

Joint ci ratio: 1.711769e-01	ci left: 2.335948e-02	ci right 2.777992e-02	k: 510	n:20000
Cons ci ratio: 3.815379e-01	ci left: 4.250695e-03	ci right 6.297200e-03	k: 104	n:20000
KS ci ratio: 2.806512e-02	ci left: 4.867974e-01	ci right 5.007045e-01	k: 9875	n:20000
KIAA0947   20000 perm   7 sec   (3007 perm/sec)   p_kst 4.937500e-01   p_cons 5.200000e-03   p_joint 2.550000e-02

Joint ci ratio: 1.850737e-01	ci left: 1.336863e-02	ci right 1.612652e-02	k: 441	n:30000
Cons ci ratio: 3.140424e-01	ci left: 4.356227e-03	ci right 6.008502e-03	k: 154	n:30000
KS ci ratio: 2.239985e-02	ci left: 4.994588e-01	ci right 5.108069e-01	k: 15154	n:30000
KIAA0947   30000 perm   10 sec   (2979 perm/sec)   p_kst 5.051333e-01   p_cons 5.133333e-03   p_joint 1.470000e-02

Joint ci ratio: 1.339866e-01	ci left: 1.954468e-02	ci right 2.237546e-02	k: 837	n:40000
Cons ci ratio: 2.647682e-01	ci left: 4.728754e-03	ci right 6.194449e-03	k: 217	n:40000
KS ci ratio: 1.936354e-02	ci left: 5.011377e-01	ci right 5.109615e-01	k: 20242	n:40000
KIAA0947   40000 perm   14 sec   (2928 perm/sec)   p_kst 5.060500e-01   p_cons 5.425000e-03   p_joint 2.092500e-02

Joint ci ratio: 1.285419e-01	ci left: 1.708509e-02	ci right 1.945132e-02	k: 912	n:50000
Cons ci ratio: 2.388072e-01	ci left: 4.720048e-03	ci right 6.018397e-03	k: 267	n:50000
KS ci ratio: 1.738292e-02	ci left: 4.998274e-01	ci right 5.086121e-01	k: 25211	n:50000
KIAA0947   50000 perm   17 sec   (2893 perm/sec)   p_kst 5.042200e-01   p_cons 5.340000e-03   p_joint 1.824000e-02

Joint ci ratio: 1.430140e-01	ci left: 1.148161e-02	ci right 1.326602e-02	k: 741	n:60000
Cons ci ratio: 2.171872e-01	ci left: 4.813530e-03	ci right 6.001748e-03	k: 323	n:60000
KS ci ratio: 1.581784e-02	ci left: 5.018076e-01	ci right 5.098251e-01	k: 30349	n:60000
KIAA0947   60000 perm   21 sec   (2851 perm/sec)   p_kst 5.058167e-01   p_cons 5.383333e-03   p_joint 1.235000e-02

Joint ci ratio: 1.065839e-01	ci left: 1.794581e-02	ci right 1.998005e-02	k: 1326	n:70000
Cons ci ratio: 2.029748e-01	ci left: 4.762007e-03	ci right 5.851048e-03	k: 370	n:70000
KS ci ratio: 1.467350e-02	ci left: 5.011175e-01	ci right 5.085393e-01	k: 35338	n:70000
KIAA0947   70000 perm   25 sec   (2824 perm/sec)   p_kst 5.048286e-01   p_cons 5.285714e-03   p_joint 1.894286e-02

Joint ci ratio: 9.655365e-02	ci left: 1.921190e-02	ci right 2.117311e-02	k: 1614	n:80000
Cons ci ratio: 1.859384e-01	ci left: 5.011179e-03	ci right 6.050175e-03	k: 441	n:80000
KS ci ratio: 1.371839e-02	ci left: 5.016290e-01	ci right 5.085706e-01	k: 40408	n:80000
KIAA0947   80000 perm   29 sec   (2795 perm/sec)   p_kst 5.051000e-01   p_cons 5.512500e-03   p_joint 2.017500e-02

Joint ci ratio: 9.508752e-02	ci left: 1.765134e-02	ci right 1.942433e-02	k: 1667	n:90000
Cons ci ratio: 1.741201e-01	ci left: 5.112275e-03	ci right 6.097780e-03	k: 503	n:90000
KS ci ratio: 1.293557e-02	ci left: 5.017612e-01	ci right 5.083051e-01	k: 45453	n:90000
KIAA0947   90000 perm   33 sec   (2757 perm/sec)   p_kst 5.050333e-01   p_cons 5.588889e-03   p_joint 1.852222e-02

Joint ci ratio: 7.313029e-02	ci left: 2.690764e-02	ci right 2.895987e-02	k: 2792	n:100000
Cons ci ratio: 1.644483e-01	ci left: 5.185235e-03	ci right 6.123788e-03	k: 564	n:100000
KS ci ratio: 1.227383e-02	ci left: 5.018461e-01	ci right 5.080536e-01	k: 50495	n:100000
KIAA0947   100000 perm   37 sec   (2728 perm/sec)   p_kst 5.049500e-01   p_cons 5.640000e-03   p_joint 2.792000e-02

Joint ci ratio: 6.716483e-02	ci left: 2.902660e-02	ci right 3.105282e-02	k: 3303	n:110000
Cons ci ratio: 1.581445e-01	ci left: 5.115140e-03	ci right 6.002144e-03	k: 610	n:110000
KS ci ratio: 1.170552e-02	ci left: 5.018680e-01	ci right 5.077863e-01	k: 55531	n:110000
KIAA0947   110000 perm   41 sec   (2700 perm/sec)   p_kst 5.048273e-01   p_cons 5.545455e-03   p_joint 3.002727e-02

Joint ci ratio: 6.592946e-02	ci left: 2.767238e-02	ci right 2.956716e-02	k: 3433	n:120000
Cons ci ratio: 1.520492e-01	ci left: 5.089372e-03	ci right 5.934795e-03	k: 660	n:120000
KS ci ratio: 1.119754e-02	ci left: 5.024253e-01	ci right 5.080912e-01	k: 60631	n:120000
KIAA0947   120000 perm   45 sec   (2671 perm/sec)   p_kst 5.052583e-01   p_cons 5.500000e-03   p_joint 2.860833e-02

Joint ci ratio: 6.426624e-02	ci left: 2.692817e-02	ci right 2.872374e-02	k: 3616	n:130000
Cons ci ratio: 1.460927e-01	ci left: 5.105185e-03	ci right 5.917112e-03	k: 715	n:130000
KS ci ratio: 1.075769e-02	ci left: 5.025628e-01	ci right 5.080061e-01	k: 65687	n:130000
KIAA0947   130000 perm   49 sec   (2645 perm/sec)   p_kst 5.052846e-01   p_cons 5.500000e-03   p_joint 2.781538e-02

Joint ci ratio: 6.496148e-02	ci left: 2.452587e-02	ci right 2.617959e-02	k: 3548	n:140000
Cons ci ratio: 1.396966e-01	ci left: 5.202014e-03	ci right 5.990104e-03	k: 782	n:140000
KS ci ratio: 1.035733e-02	ci left: 5.030988e-01	ci right 5.083438e-01	k: 70801	n:140000
KIAA0947   140000 perm   54 sec   (2616 perm/sec)   p_kst 5.057214e-01   p_cons 5.585714e-03   p_joint 2.534286e-02

Joint ci ratio: 6.260270e-02	ci left: 2.467528e-02	ci right 2.627647e-02	k: 3820	n:150000
Cons ci ratio: 1.341523e-01	ci left: 5.280158e-03	ci right 6.045807e-03	k: 848	n:150000
KS ci ratio: 9.998428e-03	ci left: 5.035731e-01	ci right 5.086400e-01	k: 75916	n:150000
KIAA0947   150000 perm   58 sec   (2587 perm/sec)   p_kst 5.061067e-01   p_cons 5.653333e-03   p_joint 2.546667e-02

Joint ci ratio: 6.390721e-02	ci left: 2.224025e-02	ci right 2.371460e-02	k: 3675	n:160000
Cons ci ratio: 1.297916e-01	ci left: 5.300685e-03	ci right 6.042400e-03	k: 906	n:160000
KS ci ratio: 9.679498e-03	ci left: 5.037283e-01	ci right 5.086340e-01	k: 80989	n:160000
KIAA0947   160000 perm   62 sec   (2562 perm/sec)   p_kst 5.061813e-01   p_cons 5.662500e-03   p_joint 2.296875e-02

Joint ci ratio: 6.308848e-02	ci left: 2.150485e-02	ci right 2.291151e-02	k: 3774	n:170000
Cons ci ratio: 1.257647e-01	ci left: 5.324850e-03	ci right 6.045106e-03	k: 965	n:170000
KS ci ratio: 9.376675e-03	ci left: 5.045380e-01	ci right 5.092970e-01	k: 86176	n:170000
KIAA0947   170000 perm   67 sec   (2535 perm/sec)   p_kst 5.069176e-01   p_cons 5.676471e-03   p_joint 2.220000e-02

Joint ci ratio: 6.301754e-02	ci left: 2.038084e-02	ci right 2.171242e-02	k: 3787	n:180000
Cons ci ratio: 1.214961e-01	ci left: 5.400518e-03	ci right 6.104433e-03	k: 1034	n:180000
KS ci ratio: 9.109171e-03	ci left: 5.047875e-01	ci right 5.094123e-01	k: 91278	n:180000
KIAA0947   180000 perm   72 sec   (2507 perm/sec)   p_kst 5.071000e-01   p_cons 5.744444e-03   p_joint 2.103889e-02

Joint ci ratio: 6.362976e-02	ci left: 1.896068e-02	ci right 2.021194e-02	k: 3720	n:190000
Cons ci ratio: 1.181741e-01	ci left: 5.417501e-03	ci right 6.102974e-03	k: 1093	n:190000
KS ci ratio: 8.869208e-03	ci left: 5.046808e-01	ci right 5.091821e-01	k: 96317	n:190000
KIAA0947   190000 perm   76 sec   (2485 perm/sec)   p_kst 5.069316e-01   p_cons 5.752632e-03   p_joint 1.957895e-02

Joint ci ratio: 5.722415e-02	ci left: 2.226857e-02	ci right 2.358531e-02	k: 4584	n:200000
Cons ci ratio: 1.155142e-01	ci left: 5.394170e-03	ci right 6.060279e-03	k: 1144	n:200000
KS ci ratio: 8.643887e-03	ci left: 5.047813e-01	ci right 5.091685e-01	k: 101395	n:200000
KIAA0947   200000 perm   81 sec   (2456 perm/sec)   p_kst 5.069750e-01   p_cons 5.720000e-03   p_joint 2.292000e-02

Joint ci ratio: 5.466122e-02	ci left: 2.325094e-02	ci right 2.456225e-02	k: 5019	n:210000
Cons ci ratio: 1.128366e-01	ci left: 5.391729e-03	ci right 6.041076e-03	k: 1199	n:210000
KS ci ratio: 8.434106e-03	ci left: 5.049212e-01	ci right 5.092025e-01	k: 106483	n:210000
KIAA0947   210000 perm   86 sec   (2432 perm/sec)   p_kst 5.070619e-01   p_cons 5.709524e-03   p_joint 2.390000e-02

Joint ci ratio: 5.393238e-02	ci left: 2.281718e-02	ci right 2.408633e-02	k: 5158	n:220000
Cons ci ratio: 1.099412e-01	ci left: 5.429461e-03	ci right 6.065486e-03	k: 1263	n:220000
KS ci ratio: 8.239718e-03	ci left: 5.049994e-01	ci right 5.091822e-01	k: 111560	n:220000
KIAA0947   220000 perm   91 sec   (2407 perm/sec)   p_kst 5.070909e-01   p_cons 5.740909e-03   p_joint 2.344545e-02

Joint ci ratio: 5.288514e-02	ci left: 2.271307e-02	ci right 2.395115e-02	k: 5365	n:230000
Cons ci ratio: 1.077073e-01	ci left: 5.417558e-03	ci right 6.038476e-03	k: 1316	n:230000
KS ci ratio: 8.052503e-03	ci left: 5.054241e-01	ci right 5.095148e-01	k: 116718	n:230000
KIAA0947   230000 perm   97 sec   (2380 perm/sec)   p_kst 5.074696e-01   p_cons 5.721739e-03   p_joint 2.332609e-02

Joint ci ratio: 5.436991e-02	ci left: 2.062328e-02	ci right 2.177999e-02	k: 5087	n:240000
Cons ci ratio: 1.051805e-01	ci left: 5.451399e-03	ci right 6.060631e-03	k: 1380	n:240000
KS ci ratio: 7.887606e-03	ci left: 5.051727e-01	ci right 5.091772e-01	k: 121722	n:240000
KIAA0947   240000 perm   102 sec   (2355 perm/sec)   p_kst 5.071750e-01   p_cons 5.750000e-03   p_joint 2.119583e-02

Joint ci ratio: 5.349874e-02	ci left: 2.046124e-02	ci right 2.158990e-02	k: 5255	n:250000
Cons ci ratio: 1.030749e-01	ci left: 5.455405e-03	ci right 6.052141e-03	k: 1437	n:250000
KS ci ratio: 7.728973e-03	ci left: 5.051662e-01	ci right 5.090897e-01	k: 126782	n:250000
KIAA0947   250000 perm   107 sec   (2331 perm/sec)   p_kst 5.071280e-01   p_cons 5.748000e-03   p_joint 2.102000e-02

Joint ci ratio: 5.090366e-02	ci left: 2.173204e-02	ci right 2.287095e-02	k: 5797	n:260000
Cons ci ratio: 1.006518e-01	ci left: 5.507962e-03	ci right 6.095445e-03	k: 1507	n:260000
KS ci ratio: 7.578841e-03	ci left: 5.052071e-01	ci right 5.090543e-01	k: 131854	n:260000
KIAA0947   260000 perm   113 sec   (2307 perm/sec)   p_kst 5.071308e-01   p_cons 5.796154e-03   p_joint 2.229615e-02

Joint ci ratio: 4.239527e-02	ci left: 3.004152e-02	ci right 3.134636e-02	k: 8286	n:270000
Cons ci ratio: 9.632577e-02	ci left: 5.802531e-03	ci right 6.393332e-03	k: 1645	n:270000
KS ci ratio: 7.438840e-03	ci left: 5.051308e-01	ci right 5.089061e-01	k: 136895	n:270000
KIAA0947   270000 perm   118 sec   (2283 perm/sec)   p_kst 5.070185e-01   p_cons 6.092593e-03   p_joint 3.068889e-02

Outputting figure to mutsig2_images.part000000000090/KIAA0947.11_6877_270000_0.50702_0.0060926_0.030689.png
                gene_name: KIAA0947
               theta_stop: 0.096 
                    nperm: 270000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.0061 
      ci_cons_bounds_left: 0.0058 
     ci_cons_bounds_right: 0.0064 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.031 

Current progress: 11 percent done.
KDR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.007111e-02	ci left: 7.842146e-01	ci right 8.002148e-01	k: 7923	n:10000
Cons ci ratio: 2.265589e-02	ci left: 7.409867e-01	ci right 7.580678e-01	k: 7496	n:10000
KS ci ratio: 3.489098e-02	ci left: 5.481004e-01	ci right 5.676658e-01	k: 5579	n:10000
KDR   10000 perm   3 sec   (3774 perm/sec)   p_kst 5.579000e-01   p_cons 7.496000e-01   p_joint 7.923000e-01

Outputting figure to mutsig2_images.part000000000090/KDR.10_4191_10000_0.5579_0.7496_0.7923.png
                gene_name: KDR
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 13 percent done.
KIAA0100
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.275781e-03	ci left: 9.795206e-01	ci right 9.847932e-01	k: 9823	n:10000
Cons ci ratio: 2.263779e-02	ci left: 7.412900e-01	ci right 7.583643e-01	k: 7499	n:10000
KS ci ratio: 2.266192e-02	ci left: 7.408856e-01	ci right 7.579689e-01	k: 7495	n:10000
KIAA0100   10000 perm   3 sec   (3280 perm/sec)   p_kst 7.495000e-01   p_cons 7.499000e-01   p_joint 9.823000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0100.10_6864_10000_0.7495_0.7499_0.9823.png
                gene_name: KIAA0100
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 14 percent done.
KIAA0467
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.863244e-03	ci left: 9.574375e-01	ci right 9.650907e-01	k: 9614	n:10000
KS ci ratio: 8.467404e-03	ci left: 9.512738e-01	ci right 9.594583e-01	k: 9555	n:10000
KIAA0467   10000 perm   3 sec   (2888 perm/sec)   p_kst 9.555000e-01   p_cons 9.614000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0467.10_7822_10000_0.9555_0.9614_1.png
                gene_name: KIAA0467
               theta_stop: 0.0085 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
KIAA0562
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.317333e-03	ci left: 9.420117e-01	ci right 9.509260e-01	k: 9466	n:10000
Cons ci ratio: 2.216715e-02	ci left: 7.491777e-01	ci right 7.660720e-01	k: 7577	n:10000
KS ci ratio: 3.232413e-02	ci left: 5.855029e-01	ci right 6.048417e-01	k: 5952	n:10000
KIAA0562   10000 perm   2 sec   (4449 perm/sec)   p_kst 5.952000e-01   p_cons 7.577000e-01   p_joint 9.466000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0562.10_2862_10000_0.5952_0.7577_0.9466.png
                gene_name: KIAA0562
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 17 percent done.
KIAA0753
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.419881e-02	ci left: 2.100392e-01	ci right 2.263253e-01	k: 2181	n:10000
Cons ci ratio: 9.615707e-02	ci left: 1.356056e-01	ci right 1.494034e-01	k: 1424	n:10000
KS ci ratio: 7.837355e-02	ci left: 1.921984e-01	ci right 2.079767e-01	k: 2000	n:10000
KIAA0753   10000 perm   2 sec   (4232 perm/sec)   p_kst 2.000000e-01   p_cons 1.424000e-01   p_joint 2.181000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0753.10_2976_10000_0.2_0.1424_0.2181.png
                gene_name: KIAA0753
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 18 percent done.
KDM5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.972318e-02	ci left: 3.736565e-01	ci right 3.928116e-01	k: 3832	n:10000
Cons ci ratio: 3.899868e-02	ci left: 4.926508e-01	ci right 5.123478e-01	k: 5025	n:10000
KS ci ratio: 6.635571e-02	ci left: 2.500393e-01	ci right 2.673015e-01	k: 2586	n:10000
KDM5C   10000 perm   3 sec   (3552 perm/sec)   p_kst 2.586000e-01   p_cons 5.025000e-01   p_joint 3.832000e-01

Outputting figure to mutsig2_images.part000000000090/KDM5C.9_4885_10000_0.2586_0.5025_0.3832.png
                gene_name: KDM5C
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 20 percent done.
KIAA0586
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.972063e-02	ci left: 1.868804e-01	ci right 2.024978e-01	k: 1946	n:10000
Cons ci ratio: 1.540616e-01	ci left: 5.609849e-02	ci right 6.555935e-02	k: 607	n:10000
KS ci ratio: 6.663364e-02	ci left: 2.484571e-01	ci right 2.656846e-01	k: 2570	n:10000
KIAA0586   10000 perm   3 sec   (3902 perm/sec)   p_kst 2.570000e-01   p_cons 6.070000e-02   p_joint 1.946000e-01

Joint ci ratio: 6.887046e-02	ci left: 1.345781e-01	ci right 1.442270e-01	k: 2787	n:20000
Cons ci ratio: 1.049106e-01	ci left: 6.181689e-02	ci right 6.871016e-02	k: 1304	n:20000
KS ci ratio: 4.699444e-02	ci left: 2.519963e-01	ci right 2.641741e-01	k: 5161	n:20000
KIAA0586   20000 perm   6 sec   (3599 perm/sec)   p_kst 2.580500e-01   p_cons 6.520000e-02   p_joint 1.393500e-01

Joint ci ratio: 6.022753e-02	ci left: 1.199943e-01	ci right 1.274788e-01	k: 3711	n:30000
Cons ci ratio: 8.497675e-02	ci left: 6.341196e-02	ci right 6.907239e-02	k: 1986	n:30000
KS ci ratio: 3.853186e-02	ci left: 2.515323e-01	ci right 2.614482e-01	k: 7694	n:30000
KIAA0586   30000 perm   9 sec   (3492 perm/sec)   p_kst 2.564667e-01   p_cons 6.620000e-02   p_joint 1.237000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0586.9_4539_30000_0.25647_0.0662_0.1237.png
                gene_name: KIAA0586
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 21 percent done.
KIAA1199
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.073802e-02	ci left: 6.095991e-01	ci right 6.287314e-01	k: 6192	n:10000
Cons ci ratio: 5.814273e-02	ci left: 3.033218e-01	ci right 3.215876e-01	k: 3124	n:10000
KS ci ratio: 9.408979e-03	ci left: 9.409733e-01	ci right 9.499650e-01	k: 9456	n:10000
KIAA1199   10000 perm   3 sec   (3982 perm/sec)   p_kst 9.456000e-01   p_cons 3.124000e-01   p_joint 6.192000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1199.9_4198_10000_0.9456_0.3124_0.6192.png
                gene_name: KIAA1199
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 23 percent done.
KIAA1370
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.804040e-02	ci left: 2.406473e-01	ci right 2.576990e-01	k: 2491	n:10000
Cons ci ratio: 1.462208e-02	ci left: 8.713228e-01	ci right 8.842562e-01	k: 8779	n:10000
KS ci ratio: 8.555495e-02	ci left: 1.660256e-01	ci right 1.809651e-01	k: 1734	n:10000
KIAA1370   10000 perm   2 sec   (4092 perm/sec)   p_kst 1.734000e-01   p_cons 8.779000e-01   p_joint 2.491000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1370.9_3279_10000_0.1734_0.8779_0.2491.png
                gene_name: KIAA1370
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 24 percent done.
KEL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.412697e-02	ci left: 8.786872e-01	ci right 8.912875e-01	k: 8851	n:10000
Cons ci ratio: 2.321706e-02	ci left: 7.315870e-01	ci right 7.488729e-01	k: 7403	n:10000
KS ci ratio: 2.973629e-02	ci left: 6.251744e-01	ci right 6.441471e-01	k: 6347	n:10000
KEL   10000 perm   2 sec   (4736 perm/sec)   p_kst 6.347000e-01   p_cons 7.403000e-01   p_joint 8.851000e-01

Outputting figure to mutsig2_images.part000000000090/KEL.8_2275_10000_0.6347_0.7403_0.8851.png
                gene_name: KEL
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 25 percent done.
KIAA0319
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.894319e-02	ci left: 2.358052e-01	ci right 2.527440e-01	k: 2442	n:10000
Cons ci ratio: 1.292744e-01	ci left: 7.873206e-02	ci right 8.971158e-02	k: 841	n:10000
KS ci ratio: 3.194324e-02	ci left: 5.912235e-01	ci right 6.105177e-01	k: 6009	n:10000
KIAA0319   10000 perm   2 sec   (4681 perm/sec)   p_kst 6.009000e-01   p_cons 8.410000e-02   p_joint 2.442000e-01

Joint ci ratio: 5.520369e-02	ci left: 1.957616e-01	ci right 2.069253e-01	k: 4026	n:20000
Cons ci ratio: 9.345775e-02	ci left: 7.705916e-02	ci right 8.466322e-02	k: 1616	n:20000
KS ci ratio: 2.348943e-02	ci left: 5.751278e-01	ci right 5.888484e-01	k: 11640	n:20000
KIAA0319   20000 perm   5 sec   (4124 perm/sec)   p_kst 5.820000e-01   p_cons 8.080000e-02   p_joint 2.013000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0319.8_3331_20000_0.582_0.0808_0.2013.png
                gene_name: KIAA0319
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 27 percent done.
KIAA0528
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.664856e-02	ci left: 6.746845e-01	ci right 6.930083e-01	k: 6839	n:10000
Cons ci ratio: 3.321714e-02	ci left: 5.722601e-01	ci right 5.916921e-01	k: 5820	n:10000
KS ci ratio: 3.328544e-02	ci left: 5.712572e-01	ci right 5.906956e-01	k: 5810	n:10000
KIAA0528   10000 perm   2 sec   (4697 perm/sec)   p_kst 5.810000e-01   p_cons 5.820000e-01   p_joint 6.839000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0528.8_3099_10000_0.581_0.582_0.6839.png
                gene_name: KIAA0528
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 28 percent done.
KIAA1009
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.254592e-02	ci left: 5.821915e-01	ci right 6.015549e-01	k: 5919	n:10000
Cons ci ratio: 5.830549e-02	ci left: 3.021317e-01	ci right 3.203783e-01	k: 3112	n:10000
KS ci ratio: 2.752760e-02	ci left: 6.603835e-01	ci right 6.789176e-01	k: 6697	n:10000
KIAA1009   10000 perm   3 sec   (3980 perm/sec)   p_kst 6.697000e-01   p_cons 3.112000e-01   p_joint 5.919000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1009.8_4316_10000_0.6697_0.3112_0.5919.png
                gene_name: KIAA1009
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 30 percent done.
KIAA1033
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.509683e-02	ci left: 4.205673e-01	ci right 4.400733e-01	k: 4303	n:10000
Cons ci ratio: 2.964659e-02	ci left: 6.265817e-01	ci right 6.455390e-01	k: 6361	n:10000
KS ci ratio: 6.241010e-02	ci left: 2.739874e-01	ci right 2.917393e-01	k: 2828	n:10000
KIAA1033   10000 perm   2 sec   (4139 perm/sec)   p_kst 2.828000e-01   p_cons 6.361000e-01   p_joint 4.303000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1033.8_3654_10000_0.2828_0.6361_0.4303.png
                gene_name: KIAA1033
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 31 percent done.
KIAA1210
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.428683e-02	ci left: 5.567190e-01	ci right 5.762422e-01	k: 5665	n:10000
KS ci ratio: 9.997367e-03	ci left: 9.341299e-01	ci right 9.436124e-01	k: 9390	n:10000
KIAA1210   10000 perm   3 sec   (3822 perm/sec)   p_kst 9.390000e-01   p_cons 5.665000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA1210.8_5186_10000_0.939_0.5665_1.png
                gene_name: KIAA1210
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
KIAA1244
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.385736e-02	ci left: 7.208794e-01	ci right 7.383866e-01	k: 7297	n:10000
Cons ci ratio: 6.473460e-02	ci left: 2.595354e-01	ci right 2.769998e-01	k: 2682	n:10000
KS ci ratio: 1.789910e-02	ci left: 8.199499e-01	ci right 8.348589e-01	k: 8275	n:10000
KIAA1244   10000 perm   3 sec   (3541 perm/sec)   p_kst 8.275000e-01   p_cons 2.682000e-01   p_joint 7.297000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1244.8_6670_10000_0.8275_0.2682_0.7297.png
                gene_name: KIAA1244
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 34 percent done.
KIAA1267
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.468518e-02	ci left: 2.598323e-01	ci right 2.773027e-01	k: 2685	n:10000
Cons ci ratio: 1.812426e-02	ci left: 8.162904e-01	ci right 8.313205e-01	k: 8239	n:10000
KS ci ratio: 8.745193e-02	ci left: 1.599340e-01	ci right 1.746603e-01	k: 1672	n:10000
KIAA1267   10000 perm   2 sec   (4471 perm/sec)   p_kst 1.672000e-01   p_cons 8.239000e-01   p_joint 2.685000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1267.8_3374_10000_0.1672_0.8239_0.2685.png
                gene_name: KIAA1267
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 35 percent done.
KERA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.209943e-02	ci left: 4.544868e-01	ci right 4.741340e-01	k: 4643	n:10000
Cons ci ratio: 2.618131e-02	ci left: 6.823426e-01	ci right 7.005457e-01	k: 6915	n:10000
KS ci ratio: 5.029588e-02	ci left: 3.682841e-01	ci right 3.873871e-01	k: 3778	n:10000
KERA   10000 perm   2 sec   (5474 perm/sec)   p_kst 3.778000e-01   p_cons 6.915000e-01   p_joint 4.643000e-01

Outputting figure to mutsig2_images.part000000000090/KERA.7_1067_10000_0.3778_0.6915_0.4643.png
                gene_name: KERA
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 37 percent done.
KIAA0232
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.405475e-02	ci left: 4.320349e-01	ci right 4.515990e-01	k: 4418	n:10000
Cons ci ratio: 5.104208e-02	ci left: 3.614212e-01	ci right 3.804540e-01	k: 3709	n:10000
KS ci ratio: 4.242237e-02	ci left: 4.506935e-01	ci right 4.703295e-01	k: 4605	n:10000
KIAA0232   10000 perm   3 sec   (3881 perm/sec)   p_kst 4.605000e-01   p_cons 3.709000e-01   p_joint 4.418000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0232.7_4220_10000_0.4605_0.3709_0.4418.png
                gene_name: KIAA0232
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 38 percent done.
KIAA1324
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.443237e-02	ci left: 7.112884e-01	ci right 7.289832e-01	k: 7202	n:10000
Cons ci ratio: 3.601525e-02	ci left: 5.323740e-01	ci right 5.520014e-01	k: 5422	n:10000
KS ci ratio: 3.728889e-02	ci left: 5.150563e-01	ci right 5.347292e-01	k: 5249	n:10000
KIAA1324   10000 perm   2 sec   (4328 perm/sec)   p_kst 5.249000e-01   p_cons 5.422000e-01   p_joint 7.202000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1324.7_3130_10000_0.5249_0.5422_0.7202.png
                gene_name: KIAA1324
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 39 percent done.
KIAA1324L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.420057e-01	ci left: 6.575174e-02	ci right 7.590000e-02	k: 707	n:10000
Cons ci ratio: 3.030947e-02	ci left: 6.162299e-01	ci right 6.352968e-01	k: 6258	n:10000
KS ci ratio: 1.920312e-01	ci left: 3.614841e-02	ci right 4.392246e-02	k: 399	n:10000
KIAA1324L   10000 perm   2 sec   (4283 perm/sec)   p_kst 3.990000e-02   p_cons 6.258000e-01   p_joint 7.070000e-02

Joint ci ratio: 8.595144e-02	ci left: 9.013685e-02	ci right 9.828157e-02	k: 1883	n:20000
Cons ci ratio: 2.162568e-02	ci left: 6.148362e-01	ci right 6.283284e-01	k: 12432	n:20000
KS ci ratio: 1.311613e-01	ci left: 3.993964e-02	ci right 4.559426e-02	k: 854	n:20000
KIAA1324L   20000 perm   5 sec   (3897 perm/sec)   p_kst 4.270000e-02   p_cons 6.216000e-01   p_joint 9.415000e-02

Joint ci ratio: 7.052443e-02	ci left: 9.006439e-02	ci right 9.668127e-02	k: 2800	n:30000
Cons ci ratio: 1.772145e-02	ci left: 6.143791e-01	ci right 6.253977e-01	k: 18597	n:30000
KS ci ratio: 1.069847e-01	ci left: 4.053731e-02	ci right 4.515175e-02	k: 1284	n:30000
KIAA1324L   30000 perm   8 sec   (3773 perm/sec)   p_kst 4.280000e-02   p_cons 6.199000e-01   p_joint 9.333333e-02

Joint ci ratio: 6.891918e-02	ci left: 7.224041e-02	ci right 7.742152e-02	k: 2992	n:40000
Cons ci ratio: 1.538564e-02	ci left: 6.139442e-01	ci right 6.234885e-01	k: 24749	n:40000
KS ci ratio: 9.539950e-02	ci left: 3.856467e-02	ci right 4.245240e-02	k: 1619	n:40000
KIAA1324L   40000 perm   11 sec   (3680 perm/sec)   p_kst 4.047500e-02   p_cons 6.187250e-01   p_joint 7.480000e-02

Outputting figure to mutsig2_images.part000000000090/KIAA1324L.7_3178_40000_0.040475_0.61872_0.0748.png
                gene_name: KIAA1324L
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.077 

Current progress: 41 percent done.
KIAA0146
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.596919e-02	ci left: 8.506986e-01	ci right 8.644924e-01	k: 8577	n:10000
KS ci ratio: 3.990594e-02	ci left: 4.811556e-01	ci right 5.008497e-01	k: 4910	n:10000
KIAA0146   10000 perm   2 sec   (4959 perm/sec)   p_kst 4.910000e-01   p_cons 8.577000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0146.6_2828_10000_0.491_0.8577_1.png
                gene_name: KIAA0146
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
KIAA0240
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.001785e-02	ci left: 4.797565e-01	ci right 4.994495e-01	k: 4896	n:10000
Cons ci ratio: 7.213041e-02	ci left: 2.197085e-01	ci right 2.362502e-01	k: 2279	n:10000
KS ci ratio: 3.409181e-02	ci left: 5.595257e-01	ci right 5.790339e-01	k: 5693	n:10000
KIAA0240   10000 perm   2 sec   (4524 perm/sec)   p_kst 5.693000e-01   p_cons 2.279000e-01   p_joint 4.896000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0240.6_3284_10000_0.5693_0.2279_0.4896.png
                gene_name: KIAA0240
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 44 percent done.
KIAA0319L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.809059e-01	ci left: 1.641496e-02	ci right 2.187026e-02	k: 190	n:10000
Cons ci ratio: 2.408683e-01	ci left: 2.268733e-02	ci right 2.899301e-02	k: 257	n:10000
KS ci ratio: 2.008231e-01	ci left: 3.300513e-02	ci right 4.046787e-02	k: 366	n:10000
KIAA0319L   10000 perm   2 sec   (4564 perm/sec)   p_kst 3.660000e-02   p_cons 2.570000e-02   p_joint 1.900000e-02

Joint ci ratio: 1.356132e-01	ci left: 3.737462e-02	ci right 4.286011e-02	k: 801	n:20000
Cons ci ratio: 1.745358e-01	ci left: 2.244966e-02	ci right 2.679005e-02	k: 491	n:20000
KS ci ratio: 1.400379e-01	ci left: 3.505436e-02	ci right 4.038113e-02	k: 753	n:20000
KIAA0319L   20000 perm   5 sec   (4245 perm/sec)   p_kst 3.765000e-02   p_cons 2.455000e-02   p_joint 4.005000e-02

Joint ci ratio: 1.135611e-01	ci left: 3.602672e-02	ci right 4.039662e-02	k: 1145	n:30000
Cons ci ratio: 1.383377e-01	ci left: 2.426080e-02	ci right 2.789843e-02	k: 781	n:30000
KS ci ratio: 1.146578e-01	ci left: 3.534598e-02	ci right 3.967751e-02	k: 1124	n:30000
KIAA0319L   30000 perm   7 sec   (4066 perm/sec)   p_kst 3.746667e-02   p_cons 2.603333e-02   p_joint 3.816667e-02

Joint ci ratio: 1.074523e-01	ci left: 3.046721e-02	ci right 3.395114e-02	k: 1287	n:40000
Cons ci ratio: 1.185076e-01	ci left: 2.504504e-02	ci right 2.822419e-02	k: 1064	n:40000
KS ci ratio: 9.909120e-02	ci left: 3.578135e-02	ci right 3.953616e-02	k: 1505	n:40000
KIAA0319L   40000 perm   10 sec   (3973 perm/sec)   p_kst 3.762500e-02   p_cons 2.660000e-02   p_joint 3.217500e-02

Joint ci ratio: 8.467649e-02	ci left: 3.935701e-02	ci right 4.285652e-02	k: 2054	n:50000
Cons ci ratio: 1.061298e-01	ci left: 2.514866e-02	ci right 2.798666e-02	k: 1327	n:50000
KS ci ratio: 8.871580e-02	ci left: 3.591037e-02	ci right 3.926360e-02	k: 1878	n:50000
KIAA0319L   50000 perm   13 sec   (3894 perm/sec)   p_kst 3.756000e-02   p_cons 2.654000e-02   p_joint 4.108000e-02

Joint ci ratio: 8.432216e-02	ci left: 3.329876e-02	ci right 3.624646e-02	k: 2085	n:60000
Cons ci ratio: 9.631331e-02	ci left: 2.557119e-02	ci right 2.817485e-02	k: 1611	n:60000
KS ci ratio: 7.836539e-02	ci left: 3.846233e-02	ci right 4.161569e-02	k: 2401	n:60000
KIAA0319L   60000 perm   16 sec   (3823 perm/sec)   p_kst 4.001667e-02   p_cons 2.685000e-02   p_joint 3.475000e-02

Outputting figure to mutsig2_images.part000000000090/KIAA0319L.6_3230_60000_0.040017_0.02685_0.03475.png
                gene_name: KIAA0319L
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 45 percent done.
KIAA0408
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.550139e-01	ci left: 5.542402e-02	ci right 6.483425e-02	k: 600	n:10000
Cons ci ratio: 2.663449e-01	ci left: 1.837333e-02	ci right 2.411031e-02	k: 211	n:10000
KS ci ratio: 9.667188e-02	ci left: 1.343321e-01	ci right 1.480776e-01	k: 1411	n:10000
KIAA0408   10000 perm   2 sec   (5153 perm/sec)   p_kst 1.411000e-01   p_cons 2.110000e-02   p_joint 6.000000e-02

Joint ci ratio: 1.648311e-01	ci left: 2.522947e-02	ci right 2.980929e-02	k: 549	n:20000
Cons ci ratio: 1.874375e-01	ci left: 1.939152e-02	ci right 2.344929e-02	k: 427	n:20000
KS ci ratio: 7.134306e-02	ci left: 1.264513e-01	ci right 1.358562e-01	k: 2622	n:20000
KIAA0408   20000 perm   4 sec   (4713 perm/sec)   p_kst 1.311000e-01   p_cons 2.135000e-02   p_joint 2.745000e-02

Joint ci ratio: 1.883442e-01	ci left: 1.289170e-02	ci right 1.560357e-02	k: 426	n:30000
Cons ci ratio: 1.531652e-01	ci left: 1.972808e-02	ci right 2.303218e-02	k: 640	n:30000
KS ci ratio: 5.817090e-02	ci left: 1.276292e-01	ci right 1.353090e-01	k: 3943	n:30000
KIAA0408   30000 perm   7 sec   (4518 perm/sec)   p_kst 1.314333e-01   p_cons 2.133333e-02   p_joint 1.420000e-02

Joint ci ratio: 1.246563e-01	ci left: 2.261923e-02	ci right 2.565040e-02	k: 964	n:40000
Cons ci ratio: 1.332575e-01	ci left: 1.976230e-02	ci right 2.260780e-02	k: 846	n:40000
KS ci ratio: 5.061988e-02	ci left: 1.270649e-01	ci right 1.336888e-01	k: 5214	n:40000
KIAA0408   40000 perm   9 sec   (4383 perm/sec)   p_kst 1.303500e-01   p_cons 2.115000e-02   p_joint 2.410000e-02

Joint ci ratio: 1.283987e-01	ci left: 1.712382e-02	ci right 1.949257e-02	k: 914	n:50000
Cons ci ratio: 1.188316e-01	ci left: 2.003289e-02	ci right 2.258311e-02	k: 1064	n:50000
KS ci ratio: 4.552010e-02	ci left: 1.262121e-01	ci right 1.321110e-01	k: 6457	n:50000
KIAA0408   50000 perm   12 sec   (4286 perm/sec)   p_kst 1.291400e-01   p_cons 2.128000e-02   p_joint 1.828000e-02

Joint ci ratio: 1.101633e-01	ci left: 1.952700e-02	ci right 2.181969e-02	k: 1239	n:60000
Cons ci ratio: 1.117850e-01	ci left: 1.895955e-02	ci right 2.122054e-02	k: 1204	n:60000
KS ci ratio: 4.138128e-02	ci left: 1.274013e-01	ci right 1.328012e-01	k: 7805	n:60000
KIAA0408   60000 perm   14 sec   (4189 perm/sec)   p_kst 1.300833e-01   p_cons 2.006667e-02   p_joint 2.065000e-02

Joint ci ratio: 1.089947e-01	ci left: 1.715310e-02	ci right 1.914427e-02	k: 1269	n:70000
Cons ci ratio: 1.031503e-01	ci left: 1.917060e-02	ci right 2.126944e-02	k: 1414	n:70000
KS ci ratio: 3.809079e-02	ci left: 1.289055e-01	ci right 1.339251e-01	k: 9198	n:70000
KIAA0408   70000 perm   17 sec   (4104 perm/sec)   p_kst 1.314000e-01   p_cons 2.020000e-02   p_joint 1.812857e-02

Joint ci ratio: 1.241934e-01	ci left: 1.153558e-02	ci right 1.307509e-02	k: 983	n:80000
Cons ci ratio: 9.192572e-02	ci left: 2.120237e-02	ci right 2.325748e-02	k: 1777	n:80000
KS ci ratio: 3.575047e-02	ci left: 1.283094e-01	ci right 1.329924e-01	k: 10451	n:80000
KIAA0408   80000 perm   20 sec   (4011 perm/sec)   p_kst 1.306375e-01   p_cons 2.221250e-02   p_joint 1.228750e-02

Joint ci ratio: 1.252481e-01	ci left: 1.009191e-02	ci right 1.145102e-02	k: 968	n:90000
Cons ci ratio: 8.687412e-02	ci left: 2.116031e-02	ci right 2.309289e-02	k: 1990	n:90000
KS ci ratio: 3.366062e-02	ci left: 1.287469e-01	ci right 1.331658e-01	k: 11785	n:90000
KIAA0408   90000 perm   23 sec   (3945 perm/sec)   p_kst 1.309444e-01   p_cons 2.211111e-02   p_joint 1.075556e-02

Joint ci ratio: 1.090793e-01	ci left: 1.205406e-02	ci right 1.345442e-02	k: 1274	n:100000
Cons ci ratio: 8.215483e-02	ci left: 2.134471e-02	ci right 2.318315e-02	k: 2225	n:100000
KS ci ratio: 3.201711e-02	ci left: 1.282690e-01	ci right 1.324525e-01	k: 13035	n:100000
KIAA0408   100000 perm   26 sec   (3883 perm/sec)   p_kst 1.303500e-01   p_cons 2.225000e-02   p_joint 1.274000e-02

Joint ci ratio: 1.195922e-01	ci left: 9.093933e-03	ci right 1.025941e-02	k: 1063	n:110000
Cons ci ratio: 7.834141e-02	ci left: 2.138198e-02	ci right 2.313424e-02	k: 2447	n:110000
KS ci ratio: 3.016483e-02	ci left: 1.310797e-01	ci right 1.351033e-01	k: 14639	n:110000
KIAA0408   110000 perm   29 sec   (3807 perm/sec)   p_kst 1.330818e-01   p_cons 2.224545e-02   p_joint 9.663636e-03

Joint ci ratio: 9.364624e-02	ci left: 1.371726e-02	ci right 1.507302e-02	k: 1726	n:120000
Cons ci ratio: 7.492799e-02	ci left: 2.146378e-02	ci right 2.314275e-02	k: 2675	n:120000
KS ci ratio: 2.835941e-02	ci left: 1.353988e-01	ci right 1.393021e-01	k: 16481	n:120000
KIAA0408   120000 perm   32 sec   (3739 perm/sec)   p_kst 1.373417e-01   p_cons 2.229167e-02   p_joint 1.438333e-02

Outputting figure to mutsig2_images.part000000000090/KIAA0408.5_2105_120000_0.13734_0.022292_0.014383.png
                gene_name: KIAA0408
               theta_stop: 0.094 
                    nperm: 120000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 46 percent done.
KIAA0748
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.935118e-02	ci left: 4.881520e-01	ci right 5.078491e-01	k: 4980	n:10000
Cons ci ratio: 5.706448e-02	ci left: 3.113568e-01	ci right 3.297478e-01	k: 3205	n:10000
KS ci ratio: 5.133863e-02	ci left: 3.587363e-01	ci right 3.777405e-01	k: 3682	n:10000
KIAA0748   10000 perm   2 sec   (5391 perm/sec)   p_kst 3.682000e-01   p_cons 3.205000e-01   p_joint 4.980000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0748.6_1602_10000_0.3682_0.3205_0.498.png
                gene_name: KIAA0748
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 48 percent done.
KIAA0754
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.216342e-02	ci left: 5.879114e-01	ci right 6.072317e-01	k: 5976	n:10000
KS ci ratio: 1.899873e-02	ci left: 8.019682e-01	ci right 8.174510e-01	k: 8098	n:10000
KIAA0754   10000 perm   2 sec   (4118 perm/sec)   p_kst 8.098000e-01   p_cons 5.976000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0754.6_4288_10000_0.8098_0.5976_1.png
                gene_name: KIAA0754
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
KIAA0776
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.448266e-02	ci left: 5.539127e-01	ci right 5.734502e-01	k: 5637	n:10000
Cons ci ratio: 2.588722e-02	ci left: 6.871808e-01	ci right 7.053048e-01	k: 6963	n:10000
KS ci ratio: 5.555378e-02	ci left: 3.230678e-01	ci right 3.416300e-01	k: 3323	n:10000
KIAA0776   10000 perm   2 sec   (4653 perm/sec)   p_kst 3.323000e-01   p_cons 6.963000e-01   p_joint 5.637000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0776.6_2461_10000_0.3323_0.6963_0.5637.png
                gene_name: KIAA0776
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 51 percent done.
KIAA0895
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.017843e-02	ci left: 3.693784e-01	ci right 3.884922e-01	k: 3789	n:10000
Cons ci ratio: 6.387201e-02	ci left: 2.647803e-01	ci right 2.823518e-01	k: 2735	n:10000
KS ci ratio: 5.205220e-02	ci left: 3.523733e-01	ci right 3.713072e-01	k: 3618	n:10000
KIAA0895   10000 perm   2 sec   (5219 perm/sec)   p_kst 3.618000e-01   p_cons 2.735000e-01   p_joint 3.789000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0895.6_1620_10000_0.3618_0.2735_0.3789.png
                gene_name: KIAA0895
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 52 percent done.
KIAA1024
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
Cons ci ratio: 9.273055e-02	ci left: 1.445251e-01	ci right 1.586785e-01	k: 1515	n:10000
KS ci ratio: 2.213733e-01	ci left: 2.702777e-02	ci right 3.384941e-02	k: 303	n:10000
KIAA1024   10000 perm   2 sec   (4793 perm/sec)   p_kst 3.030000e-02   p_cons 1.515000e-01   p_joint 1.340000e-02

Joint ci ratio: 1.878865e-01	ci left: 1.929613e-02	ci right 2.334471e-02	k: 425	n:20000
Cons ci ratio: 6.667673e-02	ci left: 1.424148e-01	ci right 1.522879e-01	k: 2946	n:20000
KS ci ratio: 1.568044e-01	ci left: 2.791979e-02	ci right 3.271805e-02	k: 605	n:20000
KIAA1024   20000 perm   5 sec   (4409 perm/sec)   p_kst 3.025000e-02   p_cons 1.473000e-01   p_joint 2.125000e-02

Joint ci ratio: 1.403785e-01	ci left: 2.355244e-02	ci right 2.714029e-02	k: 759	n:30000
Cons ci ratio: 5.174714e-02	ci left: 1.563956e-01	ci right 1.647369e-01	k: 4816	n:30000
KS ci ratio: 1.277417e-01	ci left: 2.848615e-02	ci right 3.240548e-02	k: 912	n:30000
KIAA1024   30000 perm   7 sec   (4236 perm/sec)   p_kst 3.040000e-02   p_cons 1.605333e-01   p_joint 2.530000e-02

Joint ci ratio: 1.388908e-01	ci left: 1.816740e-02	ci right 2.090298e-02	k: 780	n:40000
Cons ci ratio: 4.485467e-02	ci left: 1.567169e-01	ci right 1.639325e-01	k: 6412	n:40000
KS ci ratio: 1.102240e-01	ci left: 2.895814e-02	ci right 3.236045e-02	k: 1225	n:40000
KIAA1024   40000 perm   10 sec   (4129 perm/sec)   p_kst 3.062500e-02   p_cons 1.603000e-01   p_joint 1.950000e-02

Joint ci ratio: 1.372172e-01	ci left: 1.495700e-02	ci right 1.717970e-02	k: 802	n:50000
Cons ci ratio: 4.013495e-02	ci left: 1.569948e-01	ci right 1.634447e-01	k: 8010	n:50000
KS ci ratio: 9.820806e-02	ci left: 2.936144e-02	ci right 3.241334e-02	k: 1543	n:50000
KIAA1024   50000 perm   12 sec   (4044 perm/sec)   p_kst 3.086000e-02   p_cons 1.602000e-01   p_joint 1.604000e-02

Joint ci ratio: 1.097124e-01	ci left: 1.968918e-02	ci right 2.199083e-02	k: 1249	n:60000
Cons ci ratio: 3.664533e-02	ci left: 1.572236e-01	ci right 1.631093e-01	k: 9609	n:60000
KS ci ratio: 8.999785e-02	ci left: 2.926890e-02	ci right 3.204341e-02	k: 1838	n:60000
KIAA1024   60000 perm   15 sec   (3963 perm/sec)   p_kst 3.063333e-02   p_cons 1.601500e-01   p_joint 2.081667e-02

Joint ci ratio: 1.111073e-01	ci left: 1.649984e-02	ci right 1.845474e-02	k: 1222	n:70000
Cons ci ratio: 3.395165e-02	ci left: 1.572486e-01	ci right 1.626939e-01	k: 11197	n:70000
KS ci ratio: 8.329188e-02	ci left: 2.939245e-02	ci right 3.196094e-02	k: 2146	n:70000
KIAA1024   70000 perm   18 sec   (3856 perm/sec)   p_kst 3.065714e-02   p_cons 1.599571e-01   p_joint 1.745714e-02

Joint ci ratio: 8.695290e-02	ci left: 2.369666e-02	ci right 2.586299e-02	k: 1981	n:80000
Cons ci ratio: 3.110552e-02	ci left: 1.630549e-01	ci right 1.682194e-01	k: 13250	n:80000
KS ci ratio: 7.803913e-02	ci left: 2.938053e-02	ci right 3.177868e-02	k: 2445	n:80000
KIAA1024   80000 perm   21 sec   (3775 perm/sec)   p_kst 3.056250e-02   p_cons 1.656250e-01   p_joint 2.476250e-02

Outputting figure to mutsig2_images.part000000000090/KIAA1024.6_2763_80000_0.030562_0.16562_0.024762.png
                gene_name: KIAA1024
               theta_stop: 0.087 
                    nperm: 80000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 54 percent done.
KHDRBS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.704442e-02	ci left: 4.000388e-01	ci right 4.194138e-01	k: 4097	n:10000
KS ci ratio: 2.156329e-02	ci left: 7.592958e-01	ci right 7.759480e-01	k: 7677	n:10000
KHDRBS3   10000 perm   2 sec   (5072 perm/sec)   p_kst 7.677000e-01   p_cons 4.097000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KHDRBS3.5_1077_10000_0.7677_0.4097_1.png
                gene_name: KHDRBS3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
KIAA0195
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.545732e-02	ci left: 4.166796e-01	ci right 4.361633e-01	k: 4264	n:10000
Cons ci ratio: 1.409225e-02	ci left: 8.791989e-01	ci right 8.917756e-01	k: 8856	n:10000
KS ci ratio: 7.017888e-02	ci left: 2.293843e-01	ci right 2.461688e-01	k: 2377	n:10000
KIAA0195   10000 perm   2 sec   (4194 perm/sec)   p_kst 2.377000e-01   p_cons 8.856000e-01   p_joint 4.264000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0195.5_4195_10000_0.2377_0.8856_0.4264.png
                gene_name: KIAA0195
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 56 percent done.
KIAA1211
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.855334e-02	ci left: 2.378802e-01	ci right 2.548678e-01	k: 2463	n:10000
Cons ci ratio: 1.799496e-01	ci left: 4.121131e-02	ci right 4.945618e-02	k: 452	n:10000
KS ci ratio: 1.245212e-02	ci left: 9.025767e-01	ci right 9.139842e-01	k: 9084	n:10000
KIAA1211   10000 perm   2 sec   (4504 perm/sec)   p_kst 9.084000e-01   p_cons 4.520000e-02   p_joint 2.463000e-01

Joint ci ratio: 5.866479e-02	ci left: 1.771189e-01	ci right 1.878736e-01	k: 3649	n:20000
Cons ci ratio: 1.239162e-01	ci left: 4.469010e-02	ci right 5.064229e-02	k: 952	n:20000
KS ci ratio: 8.705313e-03	ci left: 9.062039e-01	ci right 9.141764e-01	k: 18205	n:20000
KIAA1211   20000 perm   5 sec   (4171 perm/sec)   p_kst 9.102500e-01   p_cons 4.760000e-02   p_joint 1.824500e-01

Joint ci ratio: 4.552485e-02	ci left: 1.936356e-01	ci right 2.026896e-01	k: 5944	n:30000
Cons ci ratio: 9.840823e-02	ci left: 4.775609e-02	ci right 5.273147e-02	k: 1506	n:30000
KS ci ratio: 7.066053e-03	ci left: 9.079245e-01	ci right 9.143956e-01	k: 27336	n:30000
KIAA1211   30000 perm   7 sec   (4018 perm/sec)   p_kst 9.112000e-01   p_cons 5.020000e-02   p_joint 1.981333e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1211.5_3734_30000_0.9112_0.0502_0.19813.png
                gene_name: KIAA1211
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 58 percent done.
KIAA1310
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.098851e-02	ci left: 7.689140e-01	ci right 7.853243e-01	k: 7772	n:10000
Cons ci ratio: 3.673202e-02	ci left: 5.225625e-01	ci right 5.422186e-01	k: 5324	n:10000
KS ci ratio: 3.437765e-02	ci left: 5.554160e-01	ci right 5.749460e-01	k: 5652	n:10000
KIAA1310   10000 perm   2 sec   (4726 perm/sec)   p_kst 5.652000e-01   p_cons 5.324000e-01   p_joint 7.772000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1310.5_2717_10000_0.5652_0.5324_0.7772.png
                gene_name: KIAA1310
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 59 percent done.
KDM6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.589720e-02	ci left: 8.518204e-01	ci right 8.655699e-01	k: 8588	n:10000
Cons ci ratio: 7.174331e-02	ci left: 2.215840e-01	ci right 2.381737e-01	k: 2298	n:10000
KS ci ratio: 1.849152e-02	ci left: 8.102954e-01	ci right 8.255190e-01	k: 8180	n:10000
KDM6B   10000 perm   3 sec   (3949 perm/sec)   p_kst 8.180000e-01   p_cons 2.298000e-01   p_joint 8.588000e-01

Outputting figure to mutsig2_images.part000000000090/KDM6B.4_5125_10000_0.818_0.2298_0.8588.png
                gene_name: KDM6B
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 61 percent done.
KIAA0020
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.849152e-02	ci left: 8.102954e-01	ci right 8.255190e-01	k: 8180	n:10000
Cons ci ratio: 3.939842e-02	ci left: 4.875523e-01	ci right 5.072492e-01	k: 4974	n:10000
KS ci ratio: 2.126095e-02	ci left: 7.643573e-01	ci right 7.808836e-01	k: 7727	n:10000
KIAA0020   10000 perm   2 sec   (5101 perm/sec)   p_kst 7.727000e-01   p_cons 4.974000e-01   p_joint 8.180000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0020.4_2015_10000_0.7727_0.4974_0.818.png
                gene_name: KIAA0020
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 62 percent done.
KIAA0196
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.541090e-02	ci left: 4.171780e-01	ci right 4.366646e-01	k: 4269	n:10000
Cons ci ratio: 4.540162e-02	ci left: 4.172776e-01	ci right 4.367649e-01	k: 4270	n:10000
KS ci ratio: 5.318683e-02	ci left: 3.425342e-01	ci right 3.613521e-01	k: 3519	n:10000
KIAA0196   10000 perm   2 sec   (4579 perm/sec)   p_kst 3.519000e-01   p_cons 4.270000e-01   p_joint 4.269000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0196.4_3592_10000_0.3519_0.427_0.4269.png
                gene_name: KIAA0196
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 63 percent done.
KIAA0664
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.529587e-02	ci left: 5.423897e-01	ci right 5.619799e-01	k: 5522	n:10000
KS ci ratio: 1.287374e-02	ci left: 8.967235e-01	ci right 9.084408e-01	k: 9027	n:10000
KIAA0664   10000 perm   2 sec   (4502 perm/sec)   p_kst 9.027000e-01   p_cons 5.522000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0664.4_4030_10000_0.9027_0.5522_1.png
                gene_name: KIAA0664
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
KIAA1045
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.686859e-02	ci left: 3.128451e-01	ci right 3.312586e-01	k: 3220	n:10000
KS ci ratio: 2.919359e-02	ci left: 6.337201e-01	ci right 6.525965e-01	k: 6432	n:10000
KIAA1045   10000 perm   2 sec   (5173 perm/sec)   p_kst 6.432000e-01   p_cons 3.220000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA1045.4_1231_10000_0.6432_0.322_1.png
                gene_name: KIAA1045
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
KDM5D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.242483e-02	ci left: 5.839977e-01	ci right 6.033477e-01	k: 5937	n:10000
Cons ci ratio: 7.759865e-02	ci left: 1.953508e-01	ci right 2.112224e-01	k: 2032	n:10000
KS ci ratio: 1.999794e-02	ci left: 7.854313e-01	ci right 8.013975e-01	k: 7935	n:10000
KDM5D   10000 perm   2 sec   (4164 perm/sec)   p_kst 7.935000e-01   p_cons 2.032000e-01   p_joint 5.937000e-01

Outputting figure to mutsig2_images.part000000000090/KDM5D.3_4821_10000_0.7935_0.2032_0.5937.png
                gene_name: KDM5D
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 68 percent done.
KEAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.475807e-02	ci left: 8.692784e-01	ci right 8.823018e-01	k: 8759	n:10000
Cons ci ratio: 5.053201e-02	ci left: 3.660957e-01	ci right 3.851768e-01	k: 3756	n:10000
KS ci ratio: 3.015439e-02	ci left: 6.186415e-01	ci right 6.376837e-01	k: 6282	n:10000
KEAP1   10000 perm   2 sec   (5293 perm/sec)   p_kst 6.282000e-01   p_cons 3.756000e-01   p_joint 8.759000e-01

Outputting figure to mutsig2_images.part000000000090/KEAP1.3_1895_10000_0.6282_0.3756_0.8759.png
                gene_name: KEAP1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 69 percent done.
KHDRBS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.701956e-02	ci left: 2.462819e-01	ci right 2.634612e-01	k: 2548	n:10000
Cons ci ratio: 1.214091e-01	ci left: 8.864084e-02	ci right 1.001967e-01	k: 943	n:10000
KS ci ratio: 5.977892e-02	ci left: 2.916223e-01	ci right 3.096939e-01	k: 3006	n:10000
KHDRBS2   10000 perm   2 sec   (5388 perm/sec)   p_kst 3.006000e-01   p_cons 9.430000e-02   p_joint 2.548000e-01

Joint ci ratio: 4.721634e-02	ci left: 2.502105e-01	ci right 2.623605e-01	k: 5125	n:20000
Cons ci ratio: 9.111760e-02	ci left: 8.082777e-02	ci right 8.859346e-02	k: 1693	n:20000
KS ci ratio: 4.190127e-02	ci left: 2.979768e-01	ci right 3.107801e-01	k: 6087	n:20000
KHDRBS2   20000 perm   4 sec   (5209 perm/sec)   p_kst 3.043500e-01   p_cons 8.465000e-02   p_joint 2.562500e-01

Outputting figure to mutsig2_images.part000000000090/KHDRBS2.3_1086_20000_0.30435_0.08465_0.25625.png
                gene_name: KHDRBS2
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 70 percent done.
KHNYN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.436136e-02	ci left: 3.326995e-01	ci right 3.513926e-01	k: 3420	n:10000
Cons ci ratio: 1.041866e-01	ci left: 1.175028e-01	ci right 1.305171e-01	k: 1239	n:10000
KS ci ratio: 2.768949e-02	ci left: 6.577660e-01	ci right 6.763366e-01	k: 6671	n:10000
KHNYN   10000 perm   2 sec   (5552 perm/sec)   p_kst 6.671000e-01   p_cons 1.239000e-01   p_joint 3.420000e-01

Joint ci ratio: 3.621608e-02	ci left: 3.626556e-01	ci right 3.760824e-01	k: 7387	n:20000
Cons ci ratio: 7.328493e-02	ci left: 1.205447e-01	ci right 1.297646e-01	k: 2502	n:20000
KS ci ratio: 1.929652e-02	ci left: 6.670014e-01	ci right 6.800481e-01	k: 13471	n:20000
KHNYN   20000 perm   4 sec   (5022 perm/sec)   p_kst 6.735500e-01   p_cons 1.251000e-01   p_joint 3.693500e-01

Outputting figure to mutsig2_images.part000000000090/KHNYN.3_2065_20000_0.67355_0.1251_0.36935.png
                gene_name: KHNYN
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 72 percent done.
KIAA0090
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.435067e-02	ci left: 4.287437e-01	ci right 4.482921e-01	k: 4385	n:10000
Cons ci ratio: 3.917062e-02	ci left: 4.904513e-01	ci right 5.101485e-01	k: 5003	n:10000
KS ci ratio: 7.514666e-02	ci left: 2.057986e-01	ci right 2.219684e-01	k: 2138	n:10000
KIAA0090   10000 perm   2 sec   (4736 perm/sec)   p_kst 2.138000e-01   p_cons 5.003000e-01   p_joint 4.385000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0090.3_3074_10000_0.2138_0.5003_0.4385.png
                gene_name: KIAA0090
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 73 percent done.
KIAA0141
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.101545e-02	ci left: 4.674681e-01	ci right 4.871451e-01	k: 4773	n:10000
Cons ci ratio: 2.439601e-02	ci left: 7.118940e-01	ci right 7.295772e-01	k: 7208	n:10000
KS ci ratio: 6.967923e-02	ci left: 2.319523e-01	ci right 2.487992e-01	k: 2403	n:10000
KIAA0141   10000 perm   2 sec   (5897 perm/sec)   p_kst 2.403000e-01   p_cons 7.208000e-01   p_joint 4.773000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0141.3_1596_10000_0.2403_0.7208_0.4773.png
                gene_name: KIAA0141
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 75 percent done.
KIAA0226
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.788599e-02	ci left: 1.313941e-01	ci right 1.450174e-01	k: 1381	n:10000
Cons ci ratio: 4.202335e-02	ci left: 4.553853e-01	ci right 4.750350e-01	k: 4652	n:10000
KS ci ratio: 1.200103e-01	ci left: 9.058624e-02	ci right 1.022501e-01	k: 963	n:10000
KIAA0226   10000 perm   2 sec   (5420 perm/sec)   p_kst 9.630000e-02   p_cons 4.652000e-01   p_joint 1.381000e-01

Joint ci ratio: 6.171699e-02	ci left: 1.626446e-01	ci right 1.730522e-01	k: 3356	n:20000
Cons ci ratio: 3.073135e-02	ci left: 4.416402e-01	ci right 4.554748e-01	k: 8971	n:20000
KS ci ratio: 8.527848e-02	ci left: 9.146078e-02	ci right 9.965724e-02	k: 1910	n:20000
KIAA0226   20000 perm   4 sec   (4847 perm/sec)   p_kst 9.550000e-02   p_cons 4.485500e-01   p_joint 1.678000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0226.3_3048_20000_0.0955_0.44855_0.1678.png
                gene_name: KIAA0226
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.100 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 76 percent done.
KIAA0427
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.417799e-02	ci left: 7.155281e-01	ci right 7.331411e-01	k: 7244	n:10000
Cons ci ratio: 5.044595e-02	ci left: 3.668915e-01	ci right 3.859806e-01	k: 3764	n:10000
KS ci ratio: 2.885105e-02	ci left: 6.391508e-01	ci right 6.579626e-01	k: 6486	n:10000
KIAA0427   10000 perm   2 sec   (6172 perm/sec)   p_kst 6.486000e-01   p_cons 3.764000e-01   p_joint 7.244000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0427.3_1847_10000_0.6486_0.3764_0.7244.png
                gene_name: KIAA0427
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 77 percent done.
KIAA0907
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.153651e-01	ci left: 9.749841e-02	ci right 1.095337e-01	k: 1034	n:10000
Cons ci ratio: 2.432992e-01	ci left: 2.221701e-02	ci right 2.846368e-02	k: 252	n:10000
KS ci ratio: 1.798050e-02	ci left: 8.186283e-01	ci right 8.335812e-01	k: 8262	n:10000
KIAA0907   10000 perm   2 sec   (5513 perm/sec)   p_kst 8.262000e-01   p_cons 2.520000e-02   p_joint 1.034000e-01

Joint ci ratio: 6.624234e-02	ci left: 1.440419e-01	ci right 1.539604e-01	k: 2979	n:20000
Cons ci ratio: 1.767584e-01	ci left: 2.187547e-02	ci right 2.616445e-02	k: 479	n:20000
KS ci ratio: 1.273798e-02	ci left: 8.203195e-01	ci right 8.308856e-01	k: 16513	n:20000
KIAA0907   20000 perm   4 sec   (4984 perm/sec)   p_kst 8.256500e-01   p_cons 2.395000e-02   p_joint 1.489500e-01

Joint ci ratio: 4.555352e-02	ci left: 1.934374e-01	ci right 2.024879e-01	k: 5938	n:30000
Cons ci ratio: 1.455715e-01	ci left: 2.187970e-02	ci right 2.534674e-02	k: 707	n:30000
KS ci ratio: 1.049117e-02	ci left: 8.187678e-01	ci right 8.274362e-01	k: 24694	n:30000
KIAA0907   30000 perm   6 sec   (4702 perm/sec)   p_kst 8.231333e-01   p_cons 2.356667e-02   p_joint 1.979333e-01

Joint ci ratio: 4.545545e-02	ci left: 1.531996e-01	ci right 1.603503e-01	k: 6270	n:40000
Cons ci ratio: 1.257285e-01	ci left: 2.223148e-02	ci right 2.523821e-02	k: 948	n:40000
KS ci ratio: 9.107654e-03	ci left: 8.186441e-01	ci right 8.261590e-01	k: 32897	n:40000
KIAA0907   40000 perm   9 sec   (4538 perm/sec)   p_kst 8.224250e-01   p_cons 2.370000e-02   p_joint 1.567500e-01

Joint ci ratio: 3.853393e-02	ci left: 1.681654e-01	ci right 1.747928e-01	k: 8573	n:50000
Cons ci ratio: 1.124674e-01	ci left: 2.238440e-02	ci right 2.507128e-02	k: 1185	n:50000
KS ci ratio: 8.152378e-03	ci left: 8.188200e-01	ci right 8.255426e-01	k: 41110	n:50000
KIAA0907   50000 perm   11 sec   (4372 perm/sec)   p_kst 8.222000e-01   p_cons 2.370000e-02   p_joint 1.714600e-01

Joint ci ratio: 3.745609e-02	ci left: 1.514676e-01	ci right 1.572659e-01	k: 9261	n:60000
Cons ci ratio: 1.014056e-01	ci left: 2.306640e-02	ci right 2.554657e-02	k: 1457	n:60000
KS ci ratio: 7.421258e-03	ci left: 8.199389e-01	ci right 8.260631e-01	k: 49381	n:60000
KIAA0907   60000 perm   14 sec   (4275 perm/sec)   p_kst 8.230167e-01   p_cons 2.428333e-02   p_joint 1.543500e-01

Joint ci ratio: 3.397875e-02	ci left: 1.570358e-01	ci right 1.624781e-01	k: 11182	n:70000
Cons ci ratio: 9.385519e-02	ci left: 2.317194e-02	ci right 2.546773e-02	k: 1701	n:70000
KS ci ratio: 6.904797e-03	ci left: 8.187147e-01	ci right 8.244015e-01	k: 57510	n:70000
KIAA0907   70000 perm   17 sec   (4189 perm/sec)   p_kst 8.215714e-01   p_cons 2.430000e-02   p_joint 1.597429e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0907.3_1901_70000_0.82157_0.0243_0.15974.png
                gene_name: KIAA0907
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 79 percent done.
KIAA0913
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.136698e-02	ci left: 9.170854e-01	ci right 9.276670e-01	k: 9225	n:10000
KS ci ratio: 3.992989e-02	ci left: 4.808558e-01	ci right 5.005496e-01	k: 4907	n:10000
KIAA0913   10000 perm   3 sec   (3815 perm/sec)   p_kst 4.907000e-01   p_cons 9.225000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0913.3_5633_10000_0.4907_0.9225_1.png
                gene_name: KIAA0913
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
KDSR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.784775e-03	ci left: 9.675208e-01	ci right 9.742012e-01	k: 9710	n:10000
Cons ci ratio: 4.668649e-02	ci left: 4.037247e-01	ci right 4.231258e-01	k: 4134	n:10000
KS ci ratio: 1.434813e-02	ci left: 8.754132e-01	ci right 8.881634e-01	k: 8819	n:10000
KDSR   10000 perm   2 sec   (6204 perm/sec)   p_kst 8.819000e-01   p_cons 4.134000e-01   p_joint 9.710000e-01

Outputting figure to mutsig2_images.part000000000090/KDSR.2_1039_10000_0.8819_0.4134_0.971.png
                gene_name: KDSR
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 82 percent done.
KHDRBS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.652540e-02	ci left: 6.766995e-01	ci right 6.949921e-01	k: 6859	n:10000
Cons ci ratio: 3.563971e-02	ci left: 5.375817e-01	ci right 5.571907e-01	k: 5474	n:10000
KS ci ratio: 3.747619e-02	ci left: 5.125547e-01	ci right 5.322323e-01	k: 5224	n:10000
KHDRBS1   10000 perm   2 sec   (5795 perm/sec)   p_kst 5.224000e-01   p_cons 5.474000e-01   p_joint 6.859000e-01

Outputting figure to mutsig2_images.part000000000090/KHDRBS1.2_1368_10000_0.5224_0.5474_0.6859.png
                gene_name: KHDRBS1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 83 percent done.
KHSRP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.816527e-02	ci left: 5.034510e-01	ci right 5.231413e-01	k: 5133	n:10000
Cons ci ratio: 4.235415e-02	ci left: 4.514920e-01	ci right 4.711305e-01	k: 4613	n:10000
KS ci ratio: 4.511523e-02	ci left: 4.203680e-01	ci right 4.398728e-01	k: 4301	n:10000
KHSRP   10000 perm   2 sec   (5968 perm/sec)   p_kst 4.301000e-01   p_cons 4.613000e-01   p_joint 5.133000e-01

Outputting figure to mutsig2_images.part000000000090/KHSRP.2_2216_10000_0.4301_0.4613_0.5133.png
                gene_name: KHSRP
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 85 percent done.
KIAA0284
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.154130e-02	ci left: 2.225711e-01	ci right 2.391859e-01	k: 2308	n:10000
Cons ci ratio: 3.165721e-01	ci left: 1.270967e-02	ci right 1.757875e-02	k: 150	n:10000
KS ci ratio: 4.480136e-03	ci left: 9.847992e-01	ci right 9.893104e-01	k: 9872	n:10000
KIAA0284   10000 perm   2 sec   (4647 perm/sec)   p_kst 9.872000e-01   p_cons 1.500000e-02   p_joint 2.308000e-01

Joint ci ratio: 6.789724e-02	ci left: 1.379783e-01	ci right 1.477258e-01	k: 2856	n:20000
Cons ci ratio: 2.212663e-01	ci left: 1.373916e-02	ci right 1.720379e-02	k: 308	n:20000
KS ci ratio: 3.009013e-03	ci left: 9.868179e-01	ci right 9.898377e-01	k: 19768	n:20000
KIAA0284   20000 perm   5 sec   (4268 perm/sec)   p_kst 9.884000e-01   p_cons 1.540000e-02   p_joint 1.428000e-01

Joint ci ratio: 5.016765e-02	ci left: 1.648409e-01	ci right 1.733566e-01	k: 5072	n:30000
Cons ci ratio: 1.761816e-01	ci left: 1.480177e-02	ci right 1.769301e-02	k: 486	n:30000
KS ci ratio: 2.451612e-03	ci left: 9.871583e-01	ci right 9.896125e-01	k: 29653	n:30000
KIAA0284   30000 perm   7 sec   (4102 perm/sec)   p_kst 9.884333e-01   p_cons 1.620000e-02   p_joint 1.690667e-01

Joint ci ratio: 6.965134e-02	ci left: 7.081362e-02	ci right 7.594852e-02	k: 2934	n:40000
Cons ci ratio: 1.576307e-01	ci left: 1.402381e-02	ci right 1.644731e-02	k: 608	n:40000
KS ci ratio: 2.153094e-03	ci left: 9.869887e-01	ci right 9.891396e-01	k: 39524	n:40000
KIAA0284   40000 perm   10 sec   (3999 perm/sec)   p_kst 9.881000e-01   p_cons 1.520000e-02   p_joint 7.335000e-02

Joint ci ratio: 5.153889e-02	ci left: 1.010210e-01	ci right 1.063851e-01	k: 5184	n:50000
Cons ci ratio: 1.369574e-01	ci left: 1.501497e-02	ci right 1.724172e-02	k: 805	n:50000
KS ci ratio: 1.931930e-03	ci left: 9.870275e-01	ci right 9.889552e-01	k: 49401	n:50000
KIAA0284   50000 perm   13 sec   (3906 perm/sec)   p_kst 9.880200e-01   p_cons 1.610000e-02   p_joint 1.036800e-01

Joint ci ratio: 4.286807e-02	ci left: 1.196884e-01	ci right 1.249482e-01	k: 7338	n:60000
Cons ci ratio: 1.249065e-01	ci left: 1.514036e-02	ci right 1.717350e-02	k: 968	n:60000
KS ci ratio: 1.754920e-03	ci left: 9.872345e-01	ci right 9.889844e-01	k: 59288	n:60000
KIAA0284   60000 perm   16 sec   (3825 perm/sec)   p_kst 9.881333e-01   p_cons 1.613333e-02   p_joint 1.223000e-01

Joint ci ratio: 3.848429e-02	ci left: 1.265960e-01	ci right 1.315777e-01	k: 9035	n:70000
Cons ci ratio: 1.147417e-01	ci left: 1.545819e-02	ci right 1.735363e-02	k: 1147	n:70000
KS ci ratio: 1.613014e-03	ci left: 9.874757e-01	ci right 9.890834e-01	k: 69181	n:70000
KIAA0284   70000 perm   19 sec   (3749 perm/sec)   p_kst 9.883000e-01   p_cons 1.638571e-02   p_joint 1.290714e-01

Joint ci ratio: 5.247226e-02	ci left: 6.349879e-02	ci right 6.693282e-02	k: 5216	n:80000
Cons ci ratio: 1.074979e-01	ci left: 1.547037e-02	ci right 1.723996e-02	k: 1307	n:80000
KS ci ratio: 1.512795e-03	ci left: 9.874662e-01	ci right 9.889731e-01	k: 79059	n:80000
KIAA0284   80000 perm   22 sec   (3686 perm/sec)   p_kst 9.882375e-01   p_cons 1.633750e-02   p_joint 6.520000e-02

Joint ci ratio: 3.394287e-02	ci left: 1.268716e-01	ci right 1.312634e-01	k: 11615	n:90000
Cons ci ratio: 1.007772e-01	ci left: 1.569947e-02	ci right 1.737634e-02	k: 1487	n:90000
KS ci ratio: 1.412084e-03	ci left: 9.877476e-01	ci right 9.891540e-01	k: 88962	n:90000
KIAA0284   90000 perm   25 sec   (3623 perm/sec)   p_kst 9.884667e-01   p_cons 1.652222e-02   p_joint 1.290556e-01

Joint ci ratio: 3.223930e-02	ci left: 1.267197e-01	ci right 1.308819e-01	k: 12879	n:100000
Cons ci ratio: 9.564488e-02	ci left: 1.572927e-02	ci right 1.731896e-02	k: 1651	n:100000
KS ci ratio: 1.352802e-03	ci left: 9.875525e-01	ci right 9.888990e-01	k: 98824	n:100000
KIAA0284   100000 perm   28 sec   (3537 perm/sec)   p_kst 9.882400e-01   p_cons 1.651000e-02   p_joint 1.287900e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0284.2_4737_100000_0.98824_0.01651_0.12879.png
                gene_name: KIAA0284
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 86 percent done.
KIAA0355
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.333015e-02	ci left: 8.902613e-01	ci right 9.023067e-01	k: 8964	n:10000
Cons ci ratio: 8.798932e-02	ci left: 1.582644e-01	ci right 1.729310e-01	k: 1655	n:10000
KS ci ratio: 6.151475e-02	ci left: 2.798308e-01	ci right 2.976924e-01	k: 2887	n:10000
KIAA0355   10000 perm   2 sec   (5117 perm/sec)   p_kst 2.887000e-01   p_cons 1.655000e-01   p_joint 8.964000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0355.2_3265_10000_0.2887_0.1655_0.8964.png
                gene_name: KIAA0355
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 87 percent done.
KIAA0391
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.988199e-02	ci left: 7.873578e-01	ci right 8.032698e-01	k: 7954	n:10000
Cons ci ratio: 2.962739e-02	ci left: 6.268832e-01	ci right 6.458373e-01	k: 6364	n:10000
KS ci ratio: 3.650398e-02	ci left: 5.256658e-01	ci right 5.453136e-01	k: 5355	n:10000
KIAA0391   10000 perm   2 sec   (5762 perm/sec)   p_kst 5.355000e-01   p_cons 6.364000e-01   p_joint 7.954000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0391.2_1780_10000_0.5355_0.6364_0.7954.png
                gene_name: KIAA0391
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 89 percent done.
KIAA0406
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.504931e-02	ci left: 2.576556e-01	ci right 2.750807e-01	k: 2663	n:10000
Cons ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
KS ci ratio: 1.126523e-01	ci left: 1.018840e-01	ci right 1.141454e-01	k: 1079	n:10000
KIAA0406   10000 perm   2 sec   (4815 perm/sec)   p_kst 1.079000e-01   p_cons 5.464000e-01   p_joint 2.663000e-01

Joint ci ratio: 3.442701e-02	ci left: 3.864712e-01	ci right 4.000599e-01	k: 7865	n:20000
Cons ci ratio: 2.489654e-02	ci left: 5.465278e-01	ci right 5.603566e-01	k: 11069	n:20000
KS ci ratio: 8.219848e-02	ci left: 9.788774e-02	ci right 1.063283e-01	k: 2041	n:20000
KIAA0406   20000 perm   5 sec   (4392 perm/sec)   p_kst 1.020500e-01   p_cons 5.534500e-01   p_joint 3.932500e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0406.2_3298_20000_0.10205_0.55345_0.39325.png
                gene_name: KIAA0406
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 90 percent done.
KIAA0430
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.098745e-02	ci left: 3.619185e-01	ci right 3.809565e-01	k: 3714	n:10000
KS ci ratio: 1.731320e-02	ci left: 8.294091e-01	ci right 8.439942e-01	k: 8368	n:10000
KIAA0430   10000 perm   3 sec   (3898 perm/sec)   p_kst 8.368000e-01   p_cons 3.714000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0430.2_5336_10000_0.8368_0.3714_1.png
                gene_name: KIAA0430
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
KIAA0649
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.402236e-02	ci left: 5.605282e-01	ci right 5.800308e-01	k: 5703	n:10000
KS ci ratio: 4.823153e-02	ci left: 3.880884e-01	ci right 4.073712e-01	k: 3977	n:10000
KIAA0649   10000 perm   2 sec   (4565 perm/sec)   p_kst 3.977000e-01   p_cons 5.703000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000090/KIAA0649.2_3634_10000_0.3977_0.5703_1.png
                gene_name: KIAA0649
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
KIAA0895L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.506374e-02	ci left: 7.007944e-01	ci right 7.186833e-01	k: 7098	n:10000
Cons ci ratio: 3.084238e-02	ci left: 6.079920e-01	ci right 6.271395e-01	k: 6176	n:10000
KS ci ratio: 8.088317e-02	ci left: 1.824506e-01	ci right 1.979303e-01	k: 1901	n:10000
KIAA0895L   10000 perm   2 sec   (5944 perm/sec)   p_kst 1.901000e-01   p_cons 6.176000e-01   p_joint 7.098000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA0895L.2_1440_10000_0.1901_0.6176_0.7098.png
                gene_name: KIAA0895L
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 94 percent done.
KIAA1257
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.478554e-02	ci left: 4.239572e-01	ci right 4.434814e-01	k: 4337	n:10000
Cons ci ratio: 6.785907e-02	ci left: 2.416357e-01	ci right 2.587100e-01	k: 2501	n:10000
KS ci ratio: 4.226054e-02	ci left: 4.525901e-01	ci right 4.722318e-01	k: 4624	n:10000
KIAA1257   10000 perm   2 sec   (6139 perm/sec)   p_kst 4.624000e-01   p_cons 2.501000e-01   p_joint 4.337000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1257.2_1258_10000_0.4624_0.2501_0.4337.png
                gene_name: KIAA1257
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 96 percent done.
KIAA1274
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.486315e-02	ci left: 7.041236e-01	ci right 7.219521e-01	k: 7131	n:10000
Cons ci ratio: 9.320203e-02	ci left: 1.432503e-01	ci right 1.573541e-01	k: 1502	n:10000
KS ci ratio: 2.564880e-02	ci left: 6.911127e-01	ci right 7.091706e-01	k: 7002	n:10000
KIAA1274   10000 perm   2 sec   (5403 perm/sec)   p_kst 7.002000e-01   p_cons 1.502000e-01   p_joint 7.131000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1274.2_2647_10000_0.7002_0.1502_0.7131.png
                gene_name: KIAA1274
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 97 percent done.
KIAA1279
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.961818e-02	ci left: 3.746515e-01	ci right 3.938160e-01	k: 3842	n:10000
Cons ci ratio: 6.074508e-02	ci left: 2.849825e-01	ci right 3.029377e-01	k: 2939	n:10000
KS ci ratio: 5.132760e-02	ci left: 3.588357e-01	ci right 3.778410e-01	k: 3683	n:10000
KIAA1279   10000 perm   2 sec   (5636 perm/sec)   p_kst 3.683000e-01   p_cons 2.939000e-01   p_joint 3.842000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1279.2_1894_10000_0.3683_0.2939_0.3842.png
                gene_name: KIAA1279
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 99 percent done.
KIAA1328
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.522995e-02	ci left: 3.256490e-01	ci right 3.442472e-01	k: 3349	n:10000
Cons ci ratio: 1.183198e-01	ci left: 9.301905e-02	ci right 1.048158e-01	k: 988	n:10000
KS ci ratio: 6.751719e-02	ci left: 2.435138e-01	ci right 2.606309e-01	k: 2520	n:10000
KIAA1328   10000 perm   2 sec   (5453 perm/sec)   p_kst 2.520000e-01   p_cons 9.880000e-02   p_joint 3.349000e-01

Joint ci ratio: 4.562930e-02	ci left: 2.633596e-01	ci right 2.757075e-01	k: 5390	n:20000
Cons ci ratio: 8.177543e-02	ci left: 9.882035e-02	ci right 1.072955e-01	k: 2060	n:20000
KS ci ratio: 4.802240e-02	ci left: 2.438618e-01	ci right 2.559110e-01	k: 4997	n:20000
KIAA1328   20000 perm   4 sec   (4937 perm/sec)   p_kst 2.498500e-01   p_cons 1.030000e-01   p_joint 2.695000e-01

Outputting figure to mutsig2_images.part000000000090/KIAA1328.2_1774_20000_0.24985_0.103_0.2695.png
                gene_name: KIAA1328
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000090
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 90 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1704>
Subject: Job 9893989: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1704>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000091> was used as the working directory.
Started at Sat Oct  6 00:15:27 2012
Results reported at Sat Oct  6 03:28:27 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000091.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000091.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 91  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000091.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11597.86 sec.
    Max Memory :      3511 MB
    Max Swap   :      5974 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
91
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 91
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 91: processing genes 8115 - 8204
Calculating significance of each gene.
Using projection method.
8115	KIAA1377	3.679084e-02
8116	KIAA1383	8.803039e-01
8117	KIAA1407	5.318419e-01
8118	KIAA1409	1.034064e-01
8119	KIAA1429	4.816328e-01
8120	KIAA1430	2.364811e-01
8121	KIAA1432	1.921928e-01
8122	KIAA1462	7.605559e-01
8123	KIAA1467	2.682088e-01
8124	KIAA1468	6.086923e-01
8125	KIAA1486	1.526759e-04
8126	KIAA1522	1
8127	KIAA1524	7.621193e-01
8128	KIAA1529	1
8129	KIAA1530	8.972438e-01
8130	KIAA1539	1.035984e-01
In gene KIAA1543 the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 2888    n = 1	mu =   4.60e-07
8131	KIAA1543	9.563940e-01
8132	KIAA1549	9.950928e-01
8133	KIAA1586	2.702148e-01
8134	KIAA1598	2.024014e-01
8135	KIAA1609	5.361696e-02
8136	KIAA1614	9.978913e-01
8137	KIAA1632	2.785614e-01
8138	KIAA1644	3.075986e-01
8139	KIAA1683	7.823373e-01
8140	KIAA1704	1.773823e-01
8141	KIAA1712	4.369810e-02
8142	KIAA1715	2.790817e-01
8143	KIAA1737	1
8144	KIAA1751	9.014346e-01
8145	KIAA1755	6.143582e-01
8146	KIAA1797	6.886949e-01
8147	KIAA1804	7.308528e-07
8148	KIAA1826	1.309659e-01
8149	KIAA1841	4.768158e-01
8150	KIAA1919	6.047068e-01
8151	KIAA1949	8.159263e-01
8152	KIAA1958	1.256545e-01
8153	KIAA1967	3.275554e-01
8154	KIAA1984	1
8155	KIAA2013	1
8156	KIAA2018	6.325030e-01
8157	KIAA2022	1.180316e-03
8158	KIAA2026	6.460408e-01
8159	KIDINS220	7.636217e-01
8160	KIF11	1.883754e-01
8161	KIF12	8.271699e-01
8162	KIF13A	5.187324e-01
8163	KIF13B	4.419693e-01
8164	KIF14	7.880718e-01
8165	KIF15	4.664075e-01
8166	KIF16B	2.620153e-01
8167	KIF17	8.387662e-01
8168	KIF18A	1.879011e-01
8169	KIF18B	9.427436e-01
8170	KIF19	9.799434e-01
8171	KIF1A	7.920191e-01
8172	KIF1B	9.827368e-01
8173	KIF1C	5.822521e-01
8174	KIF20A	8.419334e-01
8175	KIF20B	5.011930e-02
8176	KIF21A	6.837407e-01
8177	KIF21B	9.576978e-01
8178	KIF23	5.904441e-01
8179	KIF24	8.949949e-01
8180	KIF25	1.680246e-01
8181	KIF26A	9.830900e-01
8182	KIF26B	9.586212e-01
8183	KIF27	8.963340e-01
8184	KIF2A	7.253369e-01
8185	KIF2B	8.167631e-03
8186	KIF2C	4.138170e-01
8187	KIF3A	1.260422e-01
8188	KIF3B	6.493405e-01
8189	KIF3C	8.555591e-01
8190	KIF4A	8.942528e-01
8191	KIF4B	2.056354e-01
8192	KIF5A	6.008921e-01
8193	KIF5B	2.659415e-01
8194	KIF5C	6.656435e-01
8195	KIF6	5.339871e-01
8196	KIF7	7.434174e-01
8197	KIF9	1.704464e-01
8198	KIFAP3	7.542108e-01
8199	KIFC1	1
8200	KIFC2	1
8201	KIFC3	7.971640e-01
8202	KIN	5.237855e-01
8203	KIR2DL1	2.881122e-01
8204	KIR2DL3	7.659601e-01
Done

Running MutSig 2:
Scatter job 91: processing genes 8115 - 8204
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KIAA1409
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.408115e-02	ci left: 7.171434e-01	ci right 7.347248e-01	k: 7260	n:10000
Cons ci ratio: 6.164979e-02	ci left: 2.789393e-01	ci right 2.967844e-01	k: 2878	n:10000
KS ci ratio: 2.911732e-02	ci left: 6.349268e-01	ci right 6.537891e-01	k: 6444	n:10000
KIAA1409   10000 perm   3 sec   (3282 perm/sec)   p_kst 6.444000e-01   p_cons 2.878000e-01   p_joint 7.260000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1409.27_7565_10000_0.6444_0.2878_0.726.png
                gene_name: KIAA1409
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 1 percent done.
KIAA1632
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.247189e-02	ci left: 5.832952e-01	ci right 6.026506e-01	k: 5930	n:10000
Cons ci ratio: 1.318628e-02	ci left: 8.923120e-01	ci right 9.042548e-01	k: 8984	n:10000
KS ci ratio: 5.444600e-02	ci left: 3.320042e-01	ci right 3.506883e-01	k: 3413	n:10000
KIAA1632   10000 perm   3 sec   (3442 perm/sec)   p_kst 3.413000e-01   p_cons 8.984000e-01   p_joint 5.930000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1632.19_7916_10000_0.3413_0.8984_0.593.png
                gene_name: KIAA1632
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 3 percent done.
KIAA1804
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 7.677370e-01	ci left: 1.618501e-03	ci right 3.688296e-03	k: 25	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
KIAA1804   10000 perm   2 sec   (4595 perm/sec)   p_kst 3.000000e-04   p_cons 2.500000e-03   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 5.836868e-01	ci left: 1.598964e-03	ci right 2.952284e-03	k: 44	n:20000
KS ci ratio: 1.752814e+00	ci left: 5.449587e-05	ci right 5.119995e-04	k: 4	n:20000
KIAA1804   20000 perm   5 sec   (4199 perm/sec)   p_kst 2.000000e-04   p_cons 2.200000e-03   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 5.013857e-01	ci left: 1.526547e-03	ci right 2.573657e-03	k: 60	n:30000
KS ci ratio: 1.306449e+00	ci left: 1.151345e-04	ci right 5.253717e-04	k: 8	n:30000
KIAA1804   30000 perm   7 sec   (4053 perm/sec)   p_kst 2.666667e-04   p_cons 2.000000e-03   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 4.198056e-01	ci left: 1.720071e-03	ci right 2.654562e-03	k: 86	n:40000
KS ci ratio: 1.181747e+00	ci left: 1.198910e-04	ci right 4.597107e-04	k: 10	n:40000
KIAA1804   40000 perm   10 sec   (3958 perm/sec)   p_kst 2.500000e-04   p_cons 2.150000e-03   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 3.785512e-01	ci left: 1.735999e-03	ci right 2.563509e-03	k: 106	n:50000
KS ci ratio: 1.131459e+00	ci left: 1.098282e-04	ci right 3.936066e-04	k: 11	n:50000
KIAA1804   50000 perm   13 sec   (3827 perm/sec)   p_kst 2.200000e-04   p_cons 2.120000e-03   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 3.434312e-01	ci left: 1.795318e-03	ci right 2.554126e-03	k: 129	n:60000
KS ci ratio: 1.087086e+00	ci left: 1.033471e-04	ci right 3.493337e-04	k: 12	n:60000
KIAA1804   60000 perm   16 sec   (3676 perm/sec)   p_kst 2.000000e-04   p_cons 2.150000e-03   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 3.240807e-01	ci left: 1.748268e-03	ci right 2.436908e-03	k: 145	n:70000
KS ci ratio: 9.506174e-01	ci left: 1.306538e-04	ci right 3.711592e-04	k: 16	n:70000
KIAA1804   70000 perm   20 sec   (3547 perm/sec)   p_kst 2.285714e-04   p_cons 2.071429e-03   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 3.048548e-01	ci left: 1.748508e-03	ci right 2.388465e-03	k: 164	n:80000
KS ci ratio: 8.172539e-01	ci left: 1.723488e-04	ci right 4.163239e-04	k: 22	n:80000
KIAA1804   80000 perm   25 sec   (3212 perm/sec)   p_kst 2.750000e-04   p_cons 2.050000e-03   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 2.804112e-01	ci left: 1.863151e-03	ci right 2.480750e-03	k: 194	n:90000
KS ci ratio: 7.686599e-01	ci left: 1.797709e-04	ci right 4.100277e-04	k: 25	n:90000
KIAA1804   90000 perm   28 sec   (3214 perm/sec)   p_kst 2.777778e-04   p_cons 2.155556e-03   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.633949e-01	ci left: 1.919135e-03	ci right 2.510332e-03	k: 220	n:100000
KS ci ratio: 7.542987e-01	ci left: 1.698474e-04	ci right 3.809372e-04	k: 26	n:100000
KIAA1804   100000 perm   31 sec   (3196 perm/sec)   p_kst 2.600000e-04   p_cons 2.200000e-03   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 2.400588e-01	ci left: 2.128031e-03	ci right 2.716876e-03	k: 265	n:110000
KS ci ratio: 7.278265e-01	ci left: 1.691501e-04	ci right 3.678682e-04	k: 28	n:110000
KIAA1804   110000 perm   35 sec   (3153 perm/sec)   p_kst 2.545455e-04   p_cons 2.409091e-03   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 2.260373e-01	ci left: 2.217511e-03	ci right 2.790287e-03	k: 299	n:120000
KS ci ratio: 7.039589e-01	ci left: 1.686801e-04	ci right 3.568715e-04	k: 30	n:120000
KIAA1804   120000 perm   38 sec   (3129 perm/sec)   p_kst 2.500000e-04   p_cons 2.491667e-03   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 2.188640e-01	ci left: 2.192206e-03	ci right 2.738058e-03	k: 319	n:130000
KS ci ratio: 7.039661e-01	ci left: 1.557043e-04	ci right 3.294212e-04	k: 30	n:130000
KIAA1804   130000 perm   43 sec   (3059 perm/sec)   p_kst 2.307692e-04   p_cons 2.453846e-03   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 2.145583e-01	ci left: 2.123429e-03	ci right 2.640384e-03	k: 332	n:140000
KS ci ratio: 6.823015e-01	ci left: 1.563478e-04	ci right 3.226595e-04	k: 32	n:140000
KIAA1804   140000 perm   46 sec   (3028 perm/sec)   p_kst 2.285714e-04   p_cons 2.371429e-03   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 2.092875e-01	ci left: 2.089182e-03	ci right 2.583703e-03	k: 349	n:150000
KS ci ratio: 6.625214e-01	ci left: 1.569782e-04	ci right 3.167297e-04	k: 34	n:150000
KIAA1804   150000 perm   50 sec   (3007 perm/sec)   p_kst 2.266667e-04   p_cons 2.326667e-03   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 2.049474e-01	ci left: 2.047491e-03	ci right 2.520834e-03	k: 364	n:160000
KS ci ratio: 6.276239e-01	ci left: 1.680744e-04	ci right 3.259729e-04	k: 38	n:160000
KIAA1804   160000 perm   54 sec   (2988 perm/sec)   p_kst 2.375000e-04   p_cons 2.275000e-03   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 1.985238e-01	ci left: 2.061098e-03	ci right 2.520845e-03	k: 388	n:170000
KS ci ratio: 5.908840e-01	ci left: 1.830606e-04	ci right 3.406952e-04	k: 43	n:170000
KIAA1804   170000 perm   57 sec   (2969 perm/sec)   p_kst 2.529412e-04   p_cons 2.282353e-03   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 1.929029e-01	ci left: 2.068111e-03	ci right 2.514828e-03	k: 411	n:180000
KS ci ratio: 5.657262e-01	ci left: 1.918607e-04	ci right 3.472075e-04	k: 47	n:180000
KIAA1804   180000 perm   61 sec   (2949 perm/sec)   p_kst 2.611111e-04   p_cons 2.283333e-03   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 1.873028e-01	ci left: 2.084582e-03	ci right 2.520299e-03	k: 436	n:190000
KS ci ratio: 5.488347e-01	ci left: 1.953270e-04	ci right 3.469263e-04	k: 50	n:190000
KIAA1804   190000 perm   65 sec   (2927 perm/sec)   p_kst 2.631579e-04   p_cons 2.294737e-03   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 1.827594e-01	ci left: 2.085258e-03	ci right 2.509373e-03	k: 458	n:200000
KS ci ratio: 5.383807e-01	ci left: 1.941863e-04	ci right 3.409416e-04	k: 52	n:200000
KIAA1804   200000 perm   69 sec   (2903 perm/sec)   p_kst 2.600000e-04   p_cons 2.290000e-03   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 1.770616e-01	ci left: 2.122389e-03	ci right 2.539158e-03	k: 488	n:210000
KS ci ratio: 5.383842e-01	ci left: 1.849391e-04	ci right 3.247069e-04	k: 52	n:210000
KIAA1804   210000 perm   73 sec   (2880 perm/sec)   p_kst 2.476190e-04   p_cons 2.323810e-03   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 1.730391e-01	ci left: 2.125882e-03	ci right 2.532862e-03	k: 511	n:220000
KS ci ratio: 5.285054e-01	ci left: 1.843982e-04	ci right 3.202530e-04	k: 54	n:220000
KIAA1804   220000 perm   77 sec   (2857 perm/sec)   p_kst 2.454545e-04   p_cons 2.322727e-03   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 1.681795e-01	ci left: 2.158321e-03	ci right 2.558732e-03	k: 541	n:230000
KS ci ratio: 5.285083e-01	ci left: 1.763807e-04	ci right 3.063294e-04	k: 54	n:230000
KIAA1804   230000 perm   81 sec   (2834 perm/sec)   p_kst 2.347826e-04   p_cons 2.352174e-03   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 1.650141e-01	ci left: 2.152243e-03	ci right 2.543264e-03	k: 562	n:240000
KS ci ratio: 5.146579e-01	ci left: 1.798850e-04	ci right 3.076980e-04	k: 57	n:240000
KIAA1804   240000 perm   85 sec   (2811 perm/sec)   p_kst 2.375000e-04   p_cons 2.341667e-03   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 1.617435e-01	ci left: 2.154392e-03	ci right 2.537292e-03	k: 585	n:250000
KS ci ratio: 5.060081e-01	ci left: 1.796588e-04	ci right 3.044124e-04	k: 59	n:250000
KIAA1804   250000 perm   90 sec   (2786 perm/sec)   p_kst 2.360000e-04   p_cons 2.340000e-03   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 1.582697e-01	ci left: 2.167528e-03	ci right 2.543703e-03	k: 611	n:260000
KS ci ratio: 4.977802e-01	ci left: 1.794668e-04	ci right 3.013632e-04	k: 61	n:260000
KIAA1804   260000 perm   94 sec   (2764 perm/sec)   p_kst 2.346154e-04   p_cons 2.350000e-03   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 1.548889e-01	ci left: 2.183332e-03	ci right 2.553405e-03	k: 638	n:270000
KS ci ratio: 4.899410e-01	ci left: 1.793043e-04	ci right 2.985250e-04	k: 63	n:270000
KIAA1804   270000 perm   99 sec   (2741 perm/sec)   p_kst 2.333333e-04   p_cons 2.362963e-03   p_joint 0

Joint ci ratio: 4.202021e-01	ci left: 2.456818e-04	ci right 3.793052e-04	k: 86	n:280000
Cons ci ratio: 1.529875e-01	ci left: 2.160296e-03	ci right 2.521557e-03	k: 654	n:280000
KS ci ratio: 4.753112e-01	ci left: 1.854478e-04	ci right 3.038746e-04	k: 67	n:280000
KIAA1804   280000 perm   103 sec   (2716 perm/sec)   p_kst 2.392857e-04   p_cons 2.335714e-03   p_joint 3.071429e-04

Joint ci ratio: 4.108625e-01	ci left: 2.495610e-04	ci right 3.814529e-04	k: 90	n:290000
Cons ci ratio: 1.504816e-01	ci left: 2.158785e-03	ci right 2.513347e-03	k: 676	n:290000
KS ci ratio: 4.651607e-01	ci left: 1.881717e-04	ci right 3.049585e-04	k: 70	n:290000
KIAA1804   290000 perm   108 sec   (2694 perm/sec)   p_kst 2.413793e-04   p_cons 2.331034e-03   p_joint 3.103448e-04

Joint ci ratio: 4.086249e-01	ci left: 2.442319e-04	ci right 3.724132e-04	k: 91	n:300000
Cons ci ratio: 1.476720e-01	ci left: 2.170260e-03	ci right 2.519465e-03	k: 702	n:300000
KS ci ratio: 4.587447e-01	ci left: 1.877898e-04	ci right 3.022309e-04	k: 72	n:300000
KIAA1804   300000 perm   112 sec   (2672 perm/sec)   p_kst 2.400000e-04   p_cons 2.340000e-03   p_joint 3.033333e-04

Joint ci ratio: 4.021212e-01	ci left: 2.450441e-04	ci right 3.710590e-04	k: 94	n:310000
Cons ci ratio: 1.455152e-01	ci left: 2.165508e-03	ci right 2.508417e-03	k: 723	n:310000
KS ci ratio: 4.525871e-01	ci left: 1.874429e-04	ci right 2.996690e-04	k: 74	n:310000
KIAA1804   310000 perm   117 sec   (2649 perm/sec)   p_kst 2.387097e-04   p_cons 2.332258e-03   p_joint 3.032258e-04

Joint ci ratio: 3.959185e-01	ci left: 2.458206e-04	ci right 3.697745e-04	k: 97	n:320000
Cons ci ratio: 1.439351e-01	ci left: 2.146024e-03	ci right 2.481840e-03	k: 739	n:320000
KS ci ratio: 4.466710e-01	ci left: 1.871274e-04	ci right 2.972578e-04	k: 76	n:320000
KIAA1804   320000 perm   122 sec   (2627 perm/sec)   p_kst 2.375000e-04   p_cons 2.309375e-03   p_joint 3.031250e-04

Joint ci ratio: 3.899943e-01	ci left: 2.465641e-04	ci right 3.685540e-04	k: 100	n:330000
Cons ci ratio: 1.423111e-01	ci left: 2.130662e-03	ci right 2.459993e-03	k: 756	n:330000
KS ci ratio: 4.437995e-01	ci left: 1.841473e-04	ci right 2.916181e-04	k: 77	n:330000
KIAA1804   330000 perm   127 sec   (2604 perm/sec)   p_kst 2.333333e-04   p_cons 2.290909e-03   p_joint 3.030303e-04

Joint ci ratio: 3.880790e-01	ci left: 2.419656e-04	ci right 3.609419e-04	k: 101	n:340000
Cons ci ratio: 1.401972e-01	ci left: 2.133252e-03	ci right 2.457677e-03	k: 779	n:340000
KS ci ratio: 4.355030e-01	ci left: 1.865779e-04	ci right 2.928355e-04	k: 80	n:340000
KIAA1804   340000 perm   132 sec   (2584 perm/sec)   p_kst 2.352941e-04   p_cons 2.291176e-03   p_joint 2.970588e-04

Joint ci ratio: 4.000279e-01	ci left: 2.196073e-04	ci right 3.317973e-04	k: 95	n:350000
Cons ci ratio: 1.385211e-01	ci left: 2.124695e-03	ci right 2.443635e-03	k: 798	n:350000
KS ci ratio: 4.302243e-01	ci left: 1.863386e-04	ci right 2.908021e-04	k: 82	n:350000
KIAA1804   350000 perm   137 sec   (2560 perm/sec)   p_kst 2.342857e-04   p_cons 2.280000e-03   p_joint 2.714286e-04

Joint ci ratio: 3.899993e-01	ci left: 2.260166e-04	ci right 3.378421e-04	k: 100	n:360000
Cons ci ratio: 1.366527e-01	ci left: 2.124683e-03	ci right 2.438970e-03	k: 820	n:360000
KS ci ratio: 4.154672e-01	ci left: 1.960561e-04	ci right 3.011539e-04	k: 88	n:360000
KIAA1804   360000 perm   142 sec   (2537 perm/sec)   p_kst 2.444444e-04   p_cons 2.277778e-03   p_joint 2.777778e-04

Joint ci ratio: 3.824980e-01	ci left: 2.296692e-04	ci right 3.405666e-04	k: 104	n:370000
Cons ci ratio: 1.351797e-01	ci left: 2.114253e-03	ci right 2.423355e-03	k: 838	n:370000
KS ci ratio: 4.086369e-01	ci left: 1.980248e-04	ci right 3.019587e-04	k: 91	n:370000
KIAA1804   370000 perm   147 sec   (2515 perm/sec)   p_kst 2.459459e-04   p_cons 2.264865e-03   p_joint 2.810811e-04

Joint ci ratio: 3.806904e-01	ci left: 2.260043e-04	ci right 3.344874e-04	k: 105	n:380000
Cons ci ratio: 1.333640e-01	ci left: 2.117108e-03	ci right 2.422140e-03	k: 861	n:380000
KS ci ratio: 4.064348e-01	ci left: 1.951753e-04	ci right 2.969125e-04	k: 92	n:380000
KIAA1804   380000 perm   152 sec   (2493 perm/sec)   p_kst 2.421053e-04   p_cons 2.265789e-03   p_joint 2.763158e-04

Joint ci ratio: 3.825008e-01	ci left: 2.178910e-04	ci right 3.231022e-04	k: 104	n:390000
Cons ci ratio: 1.318438e-01	ci left: 2.112403e-03	ci right 2.413017e-03	k: 881	n:390000
KS ci ratio: 4.021340e-01	ci left: 1.947775e-04	ci right 2.949464e-04	k: 94	n:390000
KIAA1804   390000 perm   158 sec   (2468 perm/sec)   p_kst 2.410256e-04   p_cons 2.258974e-03   p_joint 2.666667e-04

Joint ci ratio: 3.861989e-01	ci left: 2.079267e-04	ci right 3.095442e-04	k: 102	n:400000
Cons ci ratio: 1.303019e-01	ci left: 2.110372e-03	ci right 2.406912e-03	k: 902	n:400000
KS ci ratio: 4.000348e-01	ci left: 1.921558e-04	ci right 2.903238e-04	k: 95	n:400000
KIAA1804   400000 perm   164 sec   (2446 perm/sec)   p_kst 2.375000e-04   p_cons 2.255000e-03   p_joint 2.550000e-04

Joint ci ratio: 3.979681e-01	ci left: 1.896633e-04	ci right 2.859254e-04	k: 96	n:410000
Cons ci ratio: 1.290933e-01	ci left: 2.099016e-03	ci right 2.391016e-03	k: 919	n:410000
KS ci ratio: 3.939268e-01	ci left: 1.940557e-04	ci right 2.912866e-04	k: 98	n:410000
KIAA1804   410000 perm   169 sec   (2426 perm/sec)   p_kst 2.390244e-04   p_cons 2.241463e-03   p_joint 2.341463e-04

Joint ci ratio: 3.939279e-01	ci left: 1.894352e-04	ci right 2.843513e-04	k: 98	n:420000
Cons ci ratio: 1.276450e-01	ci left: 2.097434e-03	ci right 2.385692e-03	k: 940	n:420000
KS ci ratio: 3.919529e-01	ci left: 1.915809e-04	ci right 2.869663e-04	k: 99	n:420000
KIAA1804   420000 perm   175 sec   (2406 perm/sec)   p_kst 2.357143e-04   p_cons 2.238095e-03   p_joint 2.333333e-04

Joint ci ratio: 3.939290e-01	ci left: 1.850297e-04	ci right 2.777387e-04	k: 98	n:430000
Cons ci ratio: 1.262443e-01	ci left: 2.095943e-03	ci right 2.380598e-03	k: 961	n:430000
KS ci ratio: 3.919540e-01	ci left: 1.871255e-04	ci right 2.802929e-04	k: 99	n:430000
KIAA1804   430000 perm   180 sec   (2386 perm/sec)   p_kst 2.302326e-04   p_cons 2.234884e-03   p_joint 2.279070e-04

Joint ci ratio: 3.900094e-01	ci left: 1.849219e-04	ci right 2.764177e-04	k: 100	n:440000
Cons ci ratio: 1.246348e-01	ci left: 2.103344e-03	ci right 2.385093e-03	k: 986	n:440000
KS ci ratio: 3.843418e-01	ci left: 1.910765e-04	ci right 2.838962e-04	k: 103	n:440000
KIAA1804   440000 perm   186 sec   (2366 perm/sec)   p_kst 2.340909e-04   p_cons 2.240909e-03   p_joint 2.272727e-04

Joint ci ratio: 3.862044e-01	ci left: 1.848232e-04	ci right 2.751512e-04	k: 102	n:450000
Cons ci ratio: 1.232686e-01	ci left: 2.103976e-03	ci right 2.382495e-03	k: 1008	n:450000
KS ci ratio: 3.806988e-01	ci left: 1.908474e-04	ci right 2.824573e-04	k: 105	n:450000
KIAA1804   450000 perm   192 sec   (2347 perm/sec)   p_kst 2.333333e-04   p_cons 2.240000e-03   p_joint 2.266667e-04

Joint ci ratio: 3.843438e-01	ci left: 1.827686e-04	ci right 2.715532e-04	k: 103	n:460000
Cons ci ratio: 1.220651e-01	ci left: 2.100381e-03	ci right 2.375514e-03	k: 1028	n:460000
KS ci ratio: 3.789162e-01	ci left: 1.886649e-04	ci right 2.786975e-04	k: 106	n:460000
KIAA1804   460000 perm   198 sec   (2328 perm/sec)   p_kst 2.304348e-04   p_cons 2.234783e-03   p_joint 2.239130e-04

Joint ci ratio: 3.789172e-01	ci left: 1.846506e-04	ci right 2.727679e-04	k: 106	n:470000
Cons ci ratio: 1.210119e-01	ci left: 2.092825e-03	ci right 2.364434e-03	k: 1046	n:470000
KS ci ratio: 3.737132e-01	ci left: 1.904300e-04	ci right 2.797517e-04	k: 109	n:470000
KIAA1804   470000 perm   204 sec   (2308 perm/sec)   p_kst 2.319149e-04   p_cons 2.225532e-03   p_joint 2.255319e-04

Joint ci ratio: 3.771593e-01	ci left: 1.826891e-04	ci right 2.693657e-04	k: 107	n:480000
Cons ci ratio: 1.198727e-01	ci left: 2.089636e-03	ci right 2.358096e-03	k: 1066	n:480000
KS ci ratio: 3.720265e-01	ci left: 1.883508e-04	ci right 2.762013e-04	k: 110	n:480000
KIAA1804   480000 perm   210 sec   (2289 perm/sec)   p_kst 2.291667e-04   p_cons 2.220833e-03   p_joint 2.229167e-04

Joint ci ratio: 3.687197e-01	ci left: 1.882086e-04	ci right 2.750244e-04	k: 112	n:490000
Cons ci ratio: 1.187103e-01	ci left: 2.088568e-03	ci right 2.354107e-03	k: 1087	n:490000
KS ci ratio: 3.654986e-01	ci left: 1.919138e-04	ci right 2.794809e-04	k: 114	n:490000
KIAA1804   490000 perm   216 sec   (2271 perm/sec)   p_kst 2.326531e-04   p_cons 2.218367e-03   p_joint 2.285714e-04

Joint ci ratio: 3.670994e-01	ci left: 1.862595e-04	ci right 2.717081e-04	k: 113	n:500000
Cons ci ratio: 1.171584e-01	ci left: 2.103087e-03	ci right 2.366734e-03	k: 1116	n:500000
KS ci ratio: 3.623614e-01	ci left: 1.917098e-04	ci right 2.782555e-04	k: 116	n:500000
KIAA1804   500000 perm   222 sec   (2253 perm/sec)   p_kst 2.320000e-04   p_cons 2.232000e-03   p_joint 2.260000e-04

Joint ci ratio: 3.655003e-01	ci left: 1.843876e-04	ci right 2.685211e-04	k: 114	n:510000
Cons ci ratio: 1.159704e-01	ci left: 2.105633e-03	ci right 2.366740e-03	k: 1139	n:510000
KS ci ratio: 3.593035e-01	ci left: 1.915168e-04	ci right 2.770751e-04	k: 118	n:510000
KIAA1804   510000 perm   228 sec   (2235 perm/sec)   p_kst 2.313725e-04   p_cons 2.233333e-03   p_joint 2.235294e-04

Joint ci ratio: 3.578038e-01	ci left: 1.895836e-04	ci right 2.738424e-04	k: 119	n:520000
Cons ci ratio: 1.145222e-01	ci left: 2.119303e-03	ci right 2.378601e-03	k: 1168	n:520000
KS ci ratio: 3.563218e-01	ci left: 1.913342e-04	ci right 2.759372e-04	k: 120	n:520000
KIAA1804   520000 perm   234 sec   (2218 perm/sec)   p_kst 2.307692e-04   p_cons 2.246154e-03   p_joint 2.288462e-04

Joint ci ratio: 3.519849e-01	ci left: 1.928810e-04	ci right 2.768927e-04	k: 123	n:530000
Cons ci ratio: 1.135552e-01	ci left: 2.115975e-03	ci right 2.372534e-03	k: 1188	n:530000
KS ci ratio: 3.491795e-01	ci left: 1.963224e-04	ci right 2.809972e-04	k: 125	n:530000
KIAA1804   530000 perm   241 sec   (2200 perm/sec)   p_kst 2.358491e-04   p_cons 2.241509e-03   p_joint 2.320755e-04

Joint ci ratio: 3.519856e-01	ci left: 1.893091e-04	ci right 2.717652e-04	k: 123	n:540000
Cons ci ratio: 1.123796e-01	ci left: 2.121779e-03	ci right 2.376201e-03	k: 1213	n:540000
KS ci ratio: 3.450952e-01	ci left: 1.977580e-04	ci right 2.818315e-04	k: 128	n:540000
KIAA1804   540000 perm   247 sec   (2183 perm/sec)   p_kst 2.370370e-04   p_cons 2.246296e-03   p_joint 2.277778e-04

Joint ci ratio: 3.505753e-01	ci left: 1.875248e-04	ci right 2.688020e-04	k: 124	n:550000
Cons ci ratio: 1.112848e-01	ci left: 2.125617e-03	ci right 2.377854e-03	k: 1237	n:550000
KS ci ratio: 3.385949e-01	ci left: 2.024731e-04	ci right 2.865755e-04	k: 133	n:550000
KIAA1804   550000 perm   254 sec   (2167 perm/sec)   p_kst 2.418182e-04   p_cons 2.249091e-03   p_joint 2.254545e-04

Joint ci ratio: 3.491818e-01	ci left: 1.858049e-04	ci right 2.659441e-04	k: 125	n:560000
Cons ci ratio: 1.106175e-01	ci left: 2.113701e-03	ci right 2.362922e-03	k: 1252	n:560000
KS ci ratio: 3.360961e-01	ci left: 2.021264e-04	ci right 2.853309e-04	k: 135	n:560000
KIAA1804   560000 perm   261 sec   (2147 perm/sec)   p_kst 2.410714e-04   p_cons 2.235714e-03   p_joint 2.232143e-04

Joint ci ratio: 3.478047e-01	ci left: 1.841460e-04	ci right 2.631858e-04	k: 126	n:570000
Cons ci ratio: 1.094013e-01	ci left: 2.124390e-03	ci right 2.371940e-03	k: 1280	n:570000
KS ci ratio: 3.360968e-01	ci left: 1.985803e-04	ci right 2.803252e-04	k: 135	n:570000
KIAA1804   570000 perm   268 sec   (2129 perm/sec)   p_kst 2.368421e-04   p_cons 2.245614e-03   p_joint 2.210526e-04

Joint ci ratio: 3.437679e-01	ci left: 1.856943e-04	ci right 2.642679e-04	k: 129	n:580000
Cons ci ratio: 1.087250e-01	ci left: 2.114596e-03	ci right 2.359384e-03	k: 1296	n:580000
KS ci ratio: 3.324499e-01	ci left: 1.998949e-04	ci right 2.810969e-04	k: 138	n:580000
KIAA1804   580000 perm   275 sec   (2113 perm/sec)   p_kst 2.379310e-04   p_cons 2.234483e-03   p_joint 2.224138e-04

Joint ci ratio: 3.385977e-01	ci left: 1.887459e-04	ci right 2.671470e-04	k: 133	n:590000
Cons ci ratio: 1.076919e-01	ci left: 2.119982e-03	ci right 2.362913e-03	k: 1321	n:590000
KS ci ratio: 3.289192e-01	ci left: 2.011695e-04	ci right 2.818379e-04	k: 141	n:590000
KIAA1804   590000 perm   281 sec   (2097 perm/sec)   p_kst 2.389831e-04   p_cons 2.238983e-03   p_joint 2.254237e-04

Joint ci ratio: 3.189647e-01	ci left: 2.115975e-04	ci right 2.933556e-04	k: 150	n:600000
Cons ci ratio: 1.159899e-01	ci left: 1.789771e-03	ci right 2.011749e-03	k: 1139	n:600000
KS ci ratio: 3.277675e-01	ci left: 1.993459e-04	ci right 2.789442e-04	k: 142	n:600000
KIAA1804   600000 perm   288 sec   (2081 perm/sec)   p_kst 2.366667e-04   p_cons 1.898333e-03   p_joint 2.500000e-04

Joint ci ratio: 3.324519e-01	ci left: 1.900638e-04	ci right 2.672728e-04	k: 138	n:610000
Cons ci ratio: 1.148369e-01	ci left: 1.797047e-03	ci right 2.017562e-03	k: 1162	n:610000
KS ci ratio: 3.277682e-01	ci left: 1.960779e-04	ci right 2.743715e-04	k: 142	n:610000
KIAA1804   610000 perm   295 sec   (2066 perm/sec)   p_kst 2.327869e-04   p_cons 1.904918e-03   p_joint 2.262295e-04

Joint ci ratio: 3.312628e-01	ci left: 1.884767e-04	ci right 2.647088e-04	k: 139	n:620000
Cons ci ratio: 1.137656e-01	ci left: 1.802533e-03	ci right 2.021518e-03	k: 1184	n:620000
KS ci ratio: 3.200277e-01	ci left: 2.032880e-04	ci right 2.821509e-04	k: 149	n:620000
KIAA1804   620000 perm   302 sec   (2051 perm/sec)   p_kst 2.403226e-04   p_cons 1.909677e-03   p_joint 2.241935e-04

Joint ci ratio: 3.312634e-01	ci left: 1.854850e-04	ci right 2.605071e-04	k: 139	n:630000
Cons ci ratio: 1.128644e-01	ci left: 1.803225e-03	ci right 2.020444e-03	k: 1203	n:630000
KS ci ratio: 3.179154e-01	ci left: 2.029817e-04	ci right 2.811003e-04	k: 151	n:630000
KIAA1804   630000 perm   309 sec   (2036 perm/sec)   p_kst 2.396825e-04   p_cons 1.909524e-03   p_joint 2.206349e-04

Joint ci ratio: 3.277700e-01	ci left: 1.868866e-04	ci right 2.615106e-04	k: 142	n:640000
Cons ci ratio: 1.113476e-01	ci left: 1.825167e-03	ci right 2.041881e-03	k: 1236	n:640000
KS ci ratio: 3.108374e-01	ci left: 2.098850e-04	ci right 2.885054e-04	k: 158	n:640000
KIAA1804   640000 perm   317 sec   (2021 perm/sec)   p_kst 2.468750e-04   p_cons 1.931250e-03   p_joint 2.218750e-04

Joint ci ratio: 3.255017e-01	ci left: 1.868361e-04	ci right 2.608157e-04	k: 144	n:650000
Cons ci ratio: 1.103263e-01	ci left: 1.831492e-03	ci right 2.046832e-03	k: 1259	n:650000
KS ci ratio: 3.089008e-01	ci left: 2.094937e-04	ci right 2.873823e-04	k: 160	n:650000
KIAA1804   650000 perm   324 sec   (2006 perm/sec)   p_kst 2.461538e-04   p_cons 1.936923e-03   p_joint 2.215385e-04

Joint ci ratio: 3.221856e-01	ci left: 1.881812e-04	ci right 2.617776e-04	k: 147	n:660000
Cons ci ratio: 1.093327e-01	ci left: 1.837633e-03	ci right 2.051625e-03	k: 1282	n:660000
KS ci ratio: 3.069999e-01	ci left: 2.091157e-04	ci right 2.862918e-04	k: 162	n:660000
KIAA1804   660000 perm   331 sec   (1992 perm/sec)   p_kst 2.454545e-04   p_cons 1.942424e-03   p_joint 2.227273e-04

Joint ci ratio: 3.200306e-01	ci left: 1.881170e-04	ci right 2.610953e-04	k: 149	n:670000
Cons ci ratio: 1.088676e-01	ci left: 1.826175e-03	ci right 2.037870e-03	k: 1293	n:670000
KS ci ratio: 3.042131e-01	ci left: 2.101289e-04	ci right 2.868386e-04	k: 165	n:670000
KIAA1804   670000 perm   339 sec   (1978 perm/sec)   p_kst 2.462687e-04   p_cons 1.929851e-03   p_joint 2.223881e-04

Joint ci ratio: 3.189694e-01	ci left: 1.867033e-04	ci right 2.588438e-04	k: 150	n:680000
Cons ci ratio: 1.082010e-01	ci left: 1.822210e-03	ci right 2.032069e-03	k: 1309	n:680000
KS ci ratio: 3.033012e-01	ci left: 2.083973e-04	ci right 2.842028e-04	k: 166	n:680000
KIAA1804   680000 perm   346 sec   (1964 perm/sec)   p_kst 2.441176e-04   p_cons 1.925000e-03   p_joint 2.205882e-04

Joint ci ratio: 3.361039e-01	ci left: 1.640441e-04	ci right 2.315739e-04	k: 135	n:690000
Cons ci ratio: 1.075872e-01	ci left: 1.816954e-03	ci right 2.024945e-03	k: 1324	n:690000
KS ci ratio: 2.997325e-01	ci left: 2.107357e-04	ci right 2.863182e-04	k: 170	n:690000
KIAA1804   690000 perm   354 sec   (1950 perm/sec)   p_kst 2.463768e-04   p_cons 1.918841e-03   p_joint 1.956522e-04

Joint ci ratio: 3.324568e-01	ci left: 1.656267e-04	ci right 2.329097e-04	k: 138	n:700000
Cons ci ratio: 1.069037e-01	ci left: 1.814631e-03	ci right 2.020954e-03	k: 1341	n:700000
KS ci ratio: 2.962869e-01	ci left: 2.130123e-04	ci right 2.883681e-04	k: 174	n:700000
KIAA1804   700000 perm   361 sec   (1937 perm/sec)   p_kst 2.485714e-04   p_cons 1.915714e-03   p_joint 1.971429e-04

Joint ci ratio: 3.959522e-01	ci left: 1.107907e-04	ci right 1.666620e-04	k: 97	n:710000
Cons ci ratio: 1.061940e-01	ci left: 1.813750e-03	ci right 2.018517e-03	k: 1359	n:710000
KS ci ratio: 2.954443e-01	ci left: 2.113160e-04	ci right 2.858193e-04	k: 175	n:710000
KIAA1804   710000 perm   369 sec   (1924 perm/sec)   p_kst 2.464789e-04   p_cons 1.914085e-03   p_joint 1.366197e-04

Joint ci ratio: 3.939475e-01	ci left: 1.105029e-04	ci right 1.658734e-04	k: 98	n:720000
Cons ci ratio: 1.058064e-01	ci left: 1.802079e-03	ci right 2.004740e-03	k: 1369	n:720000
KS ci ratio: 2.937799e-01	ci left: 2.109536e-04	ci right 2.848321e-04	k: 177	n:720000
KIAA1804   720000 perm   377 sec   (1910 perm/sec)   p_kst 2.458333e-04   p_cons 1.901389e-03   p_joint 1.361111e-04

Joint ci ratio: 3.919729e-01	ci left: 1.102237e-04	ci right 1.651057e-04	k: 99	n:730000
Cons ci ratio: 1.050424e-01	ci left: 1.804068e-03	ci right 2.005397e-03	k: 1389	n:730000
KS ci ratio: 2.905333e-01	ci left: 2.131418e-04	ci right 2.868100e-04	k: 181	n:730000
KIAA1804   730000 perm   385 sec   (1897 perm/sec)   p_kst 2.479452e-04   p_cons 1.902740e-03   p_joint 1.356164e-04

Joint ci ratio: 3.979893e-01	ci left: 1.050827e-04	ci right 1.584199e-04	k: 96	n:740000
Cons ci ratio: 1.044432e-01	ci left: 1.800743e-03	ci right 2.000485e-03	k: 1405	n:740000
KS ci ratio: 2.873920e-01	ci left: 2.152752e-04	ci right 2.887303e-04	k: 185	n:740000
KIAA1804   740000 perm   393 sec   (1885 perm/sec)   p_kst 2.500000e-04   p_cons 1.898649e-03   p_joint 1.297297e-04

Joint ci ratio: 4.042915e-01	ci left: 1.000851e-04	ci right 1.519063e-04	k: 93	n:750000
Cons ci ratio: 1.038176e-01	ci left: 1.798810e-03	ci right 1.997069e-03	k: 1422	n:750000
KS ci ratio: 2.851019e-01	ci left: 2.161178e-04	ci right 2.891669e-04	k: 188	n:750000
KIAA1804   750000 perm   401 sec   (1872 perm/sec)   p_kst 2.506667e-04   p_cons 1.896000e-03   p_joint 1.240000e-04

Joint ci ratio: 4.021581e-01	ci left: 9.995055e-05	ci right 1.513561e-04	k: 94	n:760000
Cons ci ratio: 1.031672e-01	ci left: 1.798212e-03	ci right 1.995089e-03	k: 1440	n:760000
KS ci ratio: 2.828657e-01	ci left: 2.169404e-04	ci right 2.895898e-04	k: 191	n:760000
KIAA1804   760000 perm   409 sec   (1859 perm/sec)   p_kst 2.513158e-04   p_cons 1.894737e-03   p_joint 1.236842e-04

Joint ci ratio: 3.979904e-01	ci left: 1.009885e-04	ci right 1.522478e-04	k: 96	n:770000
Cons ci ratio: 1.027054e-01	ci left: 1.791307e-03	ci right 1.986497e-03	k: 1453	n:770000
KS ci ratio: 2.799642e-01	ci left: 2.189513e-04	ci right 2.913893e-04	k: 195	n:770000
KIAA1804   770000 perm   417 sec   (1847 perm/sec)   p_kst 2.532468e-04   p_cons 1.887013e-03   p_joint 1.246753e-04

Joint ci ratio: 3.939496e-01	ci left: 1.020026e-04	ci right 1.531141e-04	k: 98	n:780000
Cons ci ratio: 1.023546e-01	ci left: 1.780833e-03	ci right 1.974179e-03	k: 1463	n:780000
KS ci ratio: 2.750941e-01	ci left: 2.244942e-04	ci right 2.972507e-04	k: 202	n:780000
KIAA1804   780000 perm   425 sec   (1834 perm/sec)   p_kst 2.589744e-04   p_cons 1.875641e-03   p_joint 1.256410e-04

Joint ci ratio: 3.939499e-01	ci left: 1.007114e-04	ci right 1.511759e-04	k: 98	n:790000
Cons ci ratio: 1.018690e-01	ci left: 1.775559e-03	ci right 1.967363e-03	k: 1477	n:790000
KS ci ratio: 2.750945e-01	ci left: 2.216525e-04	ci right 2.934881e-04	k: 202	n:790000
KIAA1804   790000 perm   434 sec   (1822 perm/sec)   p_kst 2.556962e-04   p_cons 1.869620e-03   p_joint 1.240506e-04

Joint ci ratio: 3.919753e-01	ci left: 1.005790e-04	ci right 1.506592e-04	k: 99	n:800000
Cons ci ratio: 1.012882e-01	ci left: 1.774075e-03	ci right 1.964561e-03	k: 1494	n:800000
KS ci ratio: 2.737494e-01	ci left: 2.212098e-04	ci right 2.924911e-04	k: 204	n:800000
KIAA1804   800000 perm   442 sec   (1810 perm/sec)   p_kst 2.550000e-04   p_cons 1.867500e-03   p_joint 1.237500e-04

Joint ci ratio: 3.900300e-01	ci left: 1.004505e-04	ci right 1.501545e-04	k: 100	n:810000
Cons ci ratio: 1.006507e-01	ci left: 1.775037e-03	ci right 1.964356e-03	k: 1513	n:810000
KS ci ratio: 2.724238e-01	ci left: 2.207789e-04	ci right 2.915179e-04	k: 206	n:810000
KIAA1804   810000 perm   450 sec   (1799 perm/sec)   p_kst 2.543210e-04   p_cons 1.867901e-03   p_joint 1.234568e-04

Joint ci ratio: 3.881135e-01	ci left: 1.003257e-04	ci right 1.496616e-04	k: 101	n:820000
Cons ci ratio: 1.001560e-01	ci left: 1.771224e-03	ci right 1.959153e-03	k: 1528	n:820000
KS ci ratio: 2.704709e-01	ci left: 2.214960e-04	ci right 2.918697e-04	k: 209	n:820000
KIAA1804   820000 perm   459 sec   (1786 perm/sec)   p_kst 2.548780e-04   p_cons 1.863415e-03   p_joint 1.231707e-04

Joint ci ratio: 3.843633e-01	ci left: 1.012926e-04	ci right 1.505010e-04	k: 103	n:830000
Cons ci ratio: 9.970083e-02	ci left: 1.766329e-03	ci right 1.952837e-03	k: 1542	n:830000
KS ci ratio: 2.679310e-01	ci left: 2.233215e-04	ci right 2.934969e-04	k: 213	n:830000
KIAA1804   830000 perm   468 sec   (1775 perm/sec)   p_kst 2.566265e-04   p_cons 1.857831e-03   p_joint 1.240964e-04

Joint ci ratio: 3.807198e-01	ci left: 1.022387e-04	ci right 1.513181e-04	k: 105	n:840000
Cons ci ratio: 9.915620e-02	ci left: 1.765036e-03	ci right 1.950331e-03	k: 1559	n:840000
KS ci ratio: 2.654613e-01	ci left: 2.251065e-04	ci right 2.950823e-04	k: 217	n:840000
KIAA1804   840000 perm   476 sec   (1764 perm/sec)   p_kst 2.583333e-04   p_cons 1.855952e-03   p_joint 1.250000e-04

Joint ci ratio: 3.789366e-01	ci left: 1.021001e-04	ci right 1.508262e-04	k: 106	n:850000
Cons ci ratio: 9.871450e-02	ci left: 1.760334e-03	ci right 1.944264e-03	k: 1573	n:850000
KS ci ratio: 2.630587e-01	ci left: 2.268524e-04	ci right 2.966276e-04	k: 221	n:850000
KIAA1804   850000 perm   485 sec   (1752 perm/sec)   p_kst 2.600000e-04   p_cons 1.850588e-03   p_joint 1.247059e-04

Joint ci ratio: 3.789369e-01	ci left: 1.009128e-04	ci right 1.490724e-04	k: 106	n:860000
Cons ci ratio: 9.803158e-02	ci left: 1.764817e-03	ci right 1.947866e-03	k: 1595	n:860000
KS ci ratio: 2.624684e-01	ci left: 2.253007e-04	ci right 2.944177e-04	k: 222	n:860000
KIAA1804   860000 perm   494 sec   (1740 perm/sec)   p_kst 2.581395e-04   p_cons 1.854651e-03   p_joint 1.232558e-04

Joint ci ratio: 3.771785e-01	ci left: 1.007931e-04	ci right 1.486171e-04	k: 107	n:870000
Cons ci ratio: 9.757433e-02	ci left: 1.761351e-03	ci right 1.943140e-03	k: 1610	n:870000
KS ci ratio: 2.618821e-01	ci left: 2.237849e-04	ci right 2.922585e-04	k: 223	n:870000
KIAA1804   870000 perm   503 sec   (1729 perm/sec)   p_kst 2.563218e-04   p_cons 1.850575e-03   p_joint 1.229885e-04

Joint ci ratio: 3.737338e-01	ci left: 1.017060e-04	ci right 1.494145e-04	k: 109	n:880000
Cons ci ratio: 9.682558e-02	ci left: 1.769055e-03	ci right 1.950158e-03	k: 1635	n:880000
KS ci ratio: 2.595746e-01	ci left: 2.254904e-04	ci right 2.937791e-04	k: 227	n:880000
KIAA1804   880000 perm   512 sec   (1718 perm/sec)   p_kst 2.579545e-04   p_cons 1.857955e-03   p_joint 1.238636e-04

Joint ci ratio: 3.720465e-01	ci left: 1.015815e-04	ci right 1.489641e-04	k: 110	n:890000
Cons ci ratio: 9.632649e-02	ci left: 1.767818e-03	ci right 1.947809e-03	k: 1652	n:890000
KS ci ratio: 2.578834e-01	ci left: 2.261090e-04	ci right 2.940671e-04	k: 230	n:890000
KIAA1804   890000 perm   521 sec   (1707 perm/sec)   p_kst 2.584270e-04   p_cons 1.856180e-03   p_joint 1.235955e-04

Joint ci ratio: 3.687392e-01	ci left: 1.024682e-04	ci right 1.497371e-04	k: 112	n:900000
Cons ci ratio: 9.557735e-02	ci left: 1.776371e-03	ci right 1.955748e-03	k: 1678	n:900000
KS ci ratio: 2.556791e-01	ci left: 2.277551e-04	ci right 2.955296e-04	k: 234	n:900000
KIAA1804   900000 perm   531 sec   (1696 perm/sec)   p_kst 2.600000e-04   p_cons 1.864444e-03   p_joint 1.244444e-04

Joint ci ratio: 3.671184e-01	ci left: 1.023395e-04	ci right 1.492917e-04	k: 113	n:910000
Cons ci ratio: 9.518160e-02	ci left: 1.771868e-03	ci right 1.950008e-03	k: 1692	n:910000
KS ci ratio: 2.545981e-01	ci left: 2.273096e-04	ci right 2.946200e-04	k: 236	n:910000
KIAA1804   910000 perm   540 sec   (1685 perm/sec)   p_kst 2.593407e-04   p_cons 1.859341e-03   p_joint 1.241758e-04

Joint ci ratio: 3.737348e-01	ci left: 9.728396e-05	ci right 1.429183e-04	k: 109	n:920000
Cons ci ratio: 9.473513e-02	ci left: 1.769587e-03	ci right 1.946616e-03	k: 1708	n:920000
KS ci ratio: 2.524762e-01	ci left: 2.289104e-04	ci right 2.960411e-04	k: 240	n:920000
KIAA1804   920000 perm   549 sec   (1675 perm/sec)   p_kst 2.608696e-04   p_cons 1.856522e-03   p_joint 1.184783e-04

Joint ci ratio: 3.703827e-01	ci left: 9.818736e-05	ci right 1.437323e-04	k: 111	n:930000
Cons ci ratio: 9.404940e-02	ci left: 1.776807e-03	ci right 1.953201e-03	k: 1733	n:930000
KS ci ratio: 2.509192e-01	ci left: 2.294714e-04	ci right 2.962867e-04	k: 243	n:930000
KIAA1804   930000 perm   559 sec   (1664 perm/sec)   p_kst 2.612903e-04   p_cons 1.863441e-03   p_joint 1.193548e-04

Joint ci ratio: 3.703829e-01	ci left: 9.714280e-05	ci right 1.422032e-04	k: 111	n:940000
Cons ci ratio: 9.353832e-02	ci left: 1.777643e-03	ci right 1.953109e-03	k: 1752	n:940000
KS ci ratio: 2.498972e-01	ci left: 2.290243e-04	ci right 2.953957e-04	k: 245	n:940000
KIAA1804   940000 perm   568 sec   (1654 perm/sec)   p_kst 2.606383e-04   p_cons 1.863830e-03   p_joint 1.180851e-04

Joint ci ratio: 3.655196e-01	ci left: 9.898619e-05	ci right 1.441549e-04	k: 114	n:950000
Cons ci ratio: 9.311447e-02	ci left: 1.775380e-03	ci right 1.949785e-03	k: 1768	n:950000
KS ci ratio: 2.478898e-01	ci left: 2.305615e-04	ci right 2.967588e-04	k: 249	n:950000
KIAA1804   950000 perm   578 sec   (1645 perm/sec)   p_kst 2.621053e-04   p_cons 1.861053e-03   p_joint 1.200000e-04

Joint ci ratio: 3.639407e-01	ci left: 9.890129e-05	ci right 1.437900e-04	k: 115	n:960000
Cons ci ratio: 9.272237e-02	ci left: 1.772148e-03	ci right 1.945463e-03	k: 1783	n:960000
KS ci ratio: 2.464157e-01	ci left: 2.310913e-04	ci right 2.969857e-04	k: 252	n:960000
KIAA1804   960000 perm   587 sec   (1635 perm/sec)   p_kst 2.625000e-04   p_cons 1.857292e-03   p_joint 1.197917e-04

Joint ci ratio: 3.703836e-01	ci left: 9.413836e-05	ci right 1.378052e-04	k: 111	n:970000
Cons ci ratio: 9.230947e-02	ci left: 1.769992e-03	ci right 1.942283e-03	k: 1799	n:970000
KS ci ratio: 2.444904e-01	ci left: 2.325790e-04	ci right 2.983008e-04	k: 256	n:970000
KIAA1804   970000 perm   597 sec   (1624 perm/sec)   p_kst 2.639175e-04   p_cons 1.854639e-03   p_joint 1.144330e-04

Joint ci ratio: 3.703838e-01	ci left: 9.317775e-05	ci right 1.363991e-04	k: 111	n:980000
Cons ci ratio: 9.182609e-02	ci left: 1.770872e-03	ci right 1.942298e-03	k: 1818	n:980000
KS ci ratio: 2.430757e-01	ci left: 2.330800e-04	ci right 2.985048e-04	k: 259	n:980000
KIAA1804   980000 perm   607 sec   (1615 perm/sec)   p_kst 2.642857e-04   p_cons 1.855102e-03   p_joint 1.132653e-04

Joint ci ratio: 3.703840e-01	ci left: 9.223656e-05	ci right 1.350213e-04	k: 111	n:990000
Cons ci ratio: 9.127562e-02	ci left: 1.774698e-03	ci right 1.945409e-03	k: 1840	n:990000
KS ci ratio: 2.421462e-01	ci left: 2.326230e-04	ci right 2.976324e-04	k: 261	n:990000
KIAA1804   990000 perm   617 sec   (1606 perm/sec)   p_kst 2.636364e-04   p_cons 1.858586e-03   p_joint 1.121212e-04

Joint ci ratio: 3.881178e-01	ci left: 8.226689e-05	ci right 1.227228e-04	k: 101	n:1000000
Cons ci ratio: 9.100449e-02	ci left: 1.767700e-03	ci right 1.937206e-03	k: 1851	n:1000000
KS ci ratio: 2.407717e-01	ci left: 2.331153e-04	ci right 2.978372e-04	k: 264	n:1000000
KIAA1804   1000000 perm   626 sec   (1597 perm/sec)   p_kst 2.640000e-04   p_cons 1.851000e-03   p_joint 1.010000e-04

Joint ci ratio: 3.862292e-01	ci left: 8.234608e-05	ci right 1.225938e-04	k: 102	n:1010000
Cons ci ratio: 9.058974e-02	ci left: 1.766647e-03	ci right 1.935240e-03	k: 1868	n:1010000
KS ci ratio: 2.398683e-01	ci left: 2.326682e-04	ci right 2.969875e-04	k: 266	n:1010000
KIAA1804   1010000 perm   636 sec   (1587 perm/sec)   p_kst 2.633663e-04   p_cons 1.849505e-03   p_joint 1.009901e-04

Joint ci ratio: 3.825330e-01	ci left: 8.331009e-05	ci right 1.235412e-04	k: 104	n:1020000
Cons ci ratio: 9.015666e-02	ci left: 1.766576e-03	ci right 1.934313e-03	k: 1886	n:1020000
KS ci ratio: 2.389750e-01	ci left: 2.322303e-04	ci right 2.961541e-04	k: 268	n:1020000
KIAA1804   1020000 perm   647 sec   (1578 perm/sec)   p_kst 2.627451e-04   p_cons 1.849020e-03   p_joint 1.019608e-04

Joint ci ratio: 3.789408e-01	ci left: 8.425717e-05	ci right 1.244685e-04	k: 106	n:1030000
Cons ci ratio: 8.951813e-02	ci left: 1.775049e-03	ci right 1.942335e-03	k: 1913	n:1030000
KS ci ratio: 2.367842e-01	ci left: 2.345407e-04	ci right 2.984219e-04	k: 273	n:1030000
KIAA1804   1030000 perm   657 sec   (1569 perm/sec)   p_kst 2.650485e-04   p_cons 1.857282e-03   p_joint 1.029126e-04

Joint ci ratio: 3.771824e-01	ci left: 8.431717e-05	ci right 1.243242e-04	k: 107	n:1040000
Cons ci ratio: 8.914641e-02	ci left: 1.773022e-03	ci right 1.939387e-03	k: 1929	n:1040000
KS ci ratio: 2.354985e-01	ci left: 2.349995e-04	ci right 2.986074e-04	k: 276	n:1040000
KIAA1804   1040000 perm   667 sec   (1560 perm/sec)   p_kst 2.653846e-04   p_cons 1.854808e-03   p_joint 1.028846e-04

Joint ci ratio: 3.703853e-01	ci left: 8.696585e-05	ci right 1.273059e-04	k: 111	n:1050000
Cons ci ratio: 8.873361e-02	ci left: 1.772898e-03	ci right 1.938441e-03	k: 1947	n:1050000
KS ci ratio: 2.342335e-01	ci left: 2.354504e-04	ci right 2.987885e-04	k: 279	n:1050000
KIAA1804   1050000 perm   677 sec   (1551 perm/sec)   p_kst 2.657143e-04   p_cons 1.854286e-03   p_joint 1.057143e-04

Joint ci ratio: 3.703854e-01	ci left: 8.614541e-05	ci right 1.261049e-04	k: 111	n:1060000
Cons ci ratio: 8.830400e-02	ci left: 1.773700e-03	ci right 1.938475e-03	k: 1966	n:1060000
KS ci ratio: 2.338165e-01	ci left: 2.341173e-04	ci right 2.969684e-04	k: 280	n:1060000
KIAA1804   1060000 perm   688 sec   (1542 perm/sec)   p_kst 2.641509e-04   p_cons 1.854717e-03   p_joint 1.047170e-04

Joint ci ratio: 3.687429e-01	ci left: 8.618810e-05	ci right 1.259474e-04	k: 112	n:1070000
Cons ci ratio: 8.792493e-02	ci left: 1.772661e-03	ci right 1.936596e-03	k: 1983	n:1070000
KS ci ratio: 2.325782e-01	ci left: 2.345692e-04	ci right 2.971602e-04	k: 283	n:1070000
KIAA1804   1070000 perm   698 sec   (1532 perm/sec)   p_kst 2.644860e-04   p_cons 1.853271e-03   p_joint 1.046729e-04

Joint ci ratio: 3.671221e-01	ci left: 8.623038e-05	ci right 1.257923e-04	k: 113	n:1080000
Cons ci ratio: 8.761653e-02	ci left: 1.768926e-03	ci right 1.931912e-03	k: 1997	n:1080000
KS ci ratio: 2.313594e-01	ci left: 2.350137e-04	ci right 2.973476e-04	k: 286	n:1080000
KIAA1804   1080000 perm   709 sec   (1523 perm/sec)   p_kst 2.648148e-04   p_cons 1.849074e-03   p_joint 1.046296e-04

Joint ci ratio: 3.639433e-01	ci left: 8.710562e-05	ci right 1.266409e-04	k: 115	n:1090000
Cons ci ratio: 8.722452e-02	ci left: 1.768850e-03	ci right 1.931063e-03	k: 2015	n:1090000
KS ci ratio: 2.301596e-01	ci left: 2.354508e-04	ci right 2.975308e-04	k: 289	n:1090000
KIAA1804   1090000 perm   720 sec   (1515 perm/sec)   p_kst 2.651376e-04   p_cons 1.848624e-03   p_joint 1.055046e-04

Joint ci ratio: 3.639435e-01	ci left: 8.631374e-05	ci right 1.254897e-04	k: 115	n:1100000
Cons ci ratio: 8.683774e-02	ci left: 1.768777e-03	ci right 1.930227e-03	k: 2033	n:1100000
KS ci ratio: 2.285884e-01	ci left: 2.367377e-04	ci right 2.986709e-04	k: 293	n:1100000
KIAA1804   1100000 perm   730 sec   (1507 perm/sec)   p_kst 2.663636e-04   p_cons 1.848182e-03   p_joint 1.045455e-04

Joint ci ratio: 3.623849e-01	ci left: 8.635484e-05	ci right 1.253419e-04	k: 116	n:1110000
Cons ci ratio: 8.630869e-02	ci left: 1.774877e-03	ci right 1.935848e-03	k: 2058	n:1110000
KS ci ratio: 2.274309e-01	ci left: 2.371533e-04	ci right 2.988370e-04	k: 296	n:1110000
KIAA1804   1110000 perm   741 sec   (1499 perm/sec)   p_kst 2.666667e-04   p_cons 1.854054e-03   p_joint 1.045045e-04

Joint ci ratio: 3.623850e-01	ci left: 8.558381e-05	ci right 1.242228e-04	k: 116	n:1120000
Cons ci ratio: 8.587180e-02	ci left: 1.777377e-03	ci right 1.937717e-03	k: 2079	n:1120000
KS ci ratio: 2.270492e-01	ci left: 2.358779e-04	ci right 2.971124e-04	k: 297	n:1120000
KIAA1804   1120000 perm   751 sec   (1491 perm/sec)   p_kst 2.651786e-04   p_cons 1.856250e-03   p_joint 1.035714e-04

Joint ci ratio: 3.703867e-01	ci left: 8.080892e-05	ci right 1.182932e-04	k: 111	n:1130000
Cons ci ratio: 8.552308e-02	ci left: 1.776370e-03	ci right 1.935936e-03	k: 2096	n:1130000
KS ci ratio: 2.262912e-01	ci left: 2.354599e-04	ci right 2.963533e-04	k: 299	n:1130000
KIAA1804   1130000 perm   762 sec   (1483 perm/sec)   p_kst 2.646018e-04   p_cons 1.854867e-03   p_joint 9.823009e-05

Joint ci ratio: 3.687441e-01	ci left: 8.089580e-05	ci right 1.182138e-04	k: 112	n:1140000
Cons ci ratio: 8.521896e-02	ci left: 1.773664e-03	ci right 1.932393e-03	k: 2111	n:1140000
KS ci ratio: 2.262914e-01	ci left: 2.333944e-04	ci right 2.937538e-04	k: 299	n:1140000
KIAA1804   1140000 perm   773 sec   (1475 perm/sec)   p_kst 2.622807e-04   p_cons 1.851754e-03   p_joint 9.824561e-05

Joint ci ratio: 3.720518e-01	ci left: 7.861509e-05	ci right 1.152856e-04	k: 110	n:1150000
Cons ci ratio: 8.499818e-02	ci left: 1.767603e-03	ci right 1.925358e-03	k: 2122	n:1150000
KS ci ratio: 2.255409e-01	ci left: 2.330056e-04	ci right 2.930368e-04	k: 301	n:1150000
KIAA1804   1150000 perm   784 sec   (1467 perm/sec)   p_kst 2.617391e-04   p_cons 1.845217e-03   p_joint 9.565217e-05

Joint ci ratio: 3.959629e-01	ci left: 6.781125e-05	ci right 1.020092e-04	k: 97	n:1160000
Cons ci ratio: 8.475921e-02	ci left: 1.762490e-03	ci right 1.919325e-03	k: 2134	n:1160000
KS ci ratio: 2.236965e-01	ci left: 2.350648e-04	ci right 2.950630e-04	k: 306	n:1160000
KIAA1804   1160000 perm   795 sec   (1459 perm/sec)   p_kst 2.637931e-04   p_cons 1.839655e-03   p_joint 8.362069e-05

Joint ci ratio: 3.959630e-01	ci left: 6.723167e-05	ci right 1.011373e-04	k: 97	n:1170000
Cons ci ratio: 8.434532e-02	ci left: 1.764995e-03	ci right 1.921248e-03	k: 2155	n:1170000
KS ci ratio: 2.229715e-01	ci left: 2.346695e-04	ci right 2.943460e-04	k: 308	n:1170000
KIAA1804   1170000 perm   806 sec   (1452 perm/sec)   p_kst 2.632479e-04   p_cons 1.841880e-03   p_joint 8.290598e-05

Joint ci ratio: 3.959632e-01	ci left: 6.666190e-05	ci right 1.002803e-04	k: 97	n:1180000
Cons ci ratio: 8.403417e-02	ci left: 1.763311e-03	ci right 1.918811e-03	k: 2171	n:1180000
KS ci ratio: 2.218969e-01	ci left: 2.350815e-04	ci right 2.945353e-04	k: 311	n:1180000
KIAA1804   1180000 perm   817 sec   (1444 perm/sec)   p_kst 2.635593e-04   p_cons 1.839831e-03   p_joint 8.220339e-05

Joint ci ratio: 3.919834e-01	ci left: 6.761589e-05	ci right 1.012839e-04	k: 99	n:1190000
Cons ci ratio: 8.361166e-02	ci left: 1.766593e-03	ci right 1.921562e-03	k: 2193	n:1190000
KS ci ratio: 2.282028e-01	ci left: 2.196252e-04	ci right 2.769710e-04	k: 294	n:1190000
KIAA1804   1190000 perm   829 sec   (1436 perm/sec)   p_kst 2.470588e-04   p_cons 1.842857e-03   p_joint 8.319328e-05

Joint ci ratio: 3.939584e-01	ci left: 6.630143e-05	ci right 9.952462e-05	k: 98	n:1200000
Cons ci ratio: 8.338416e-02	ci left: 1.761663e-03	ci right 1.915758e-03	k: 2205	n:1200000
KS ci ratio: 2.266711e-01	ci left: 2.209385e-04	ci right 2.781858e-04	k: 298	n:1200000
KIAA1804   1200000 perm   840 sec   (1428 perm/sec)   p_kst 2.483333e-04   p_cons 1.837500e-03   p_joint 8.166667e-05

Joint ci ratio: 3.939585e-01	ci left: 6.575348e-05	ci right 9.870211e-05	k: 98	n:1210000
Cons ci ratio: 8.304606e-02	ci left: 1.761670e-03	ci right 1.915110e-03	k: 2223	n:1210000
KS ci ratio: 2.247991e-01	ci left: 2.230112e-04	ci right 2.802522e-04	k: 303	n:1210000
KIAA1804   1210000 perm   852 sec   (1421 perm/sec)   p_kst 2.504132e-04   p_cons 1.837190e-03   p_joint 8.099174e-05

Joint ci ratio: 3.979997e-01	ci left: 6.373841e-05	ci right 9.609132e-05	k: 96	n:1220000
Cons ci ratio: 8.273051e-02	ci left: 1.760876e-03	ci right 1.913636e-03	k: 2240	n:1220000
KS ci ratio: 2.247993e-01	ci left: 2.211832e-04	ci right 2.779551e-04	k: 303	n:1220000
KIAA1804   1220000 perm   864 sec   (1413 perm/sec)   p_kst 2.483607e-04   p_cons 1.836066e-03   p_joint 7.868852e-05

Joint ci ratio: 3.979998e-01	ci left: 6.322021e-05	ci right 9.531010e-05	k: 96	n:1230000
Cons ci ratio: 8.249177e-02	ci left: 1.756910e-03	ci right 1.908866e-03	k: 2253	n:1230000
KS ci ratio: 2.236982e-01	ci left: 2.216870e-04	ci right 2.782711e-04	k: 306	n:1230000
KIAA1804   1230000 perm   875 sec   (1405 perm/sec)   p_kst 2.487805e-04   p_cons 1.831707e-03   p_joint 7.804878e-05

Joint ci ratio: 3.939589e-01	ci left: 6.416266e-05	ci right 9.631418e-05	k: 98	n:1240000
Cons ci ratio: 8.218248e-02	ci left: 1.756169e-03	ci right 1.907463e-03	k: 2270	n:1240000
KS ci ratio: 2.226131e-01	ci left: 2.221833e-04	ci right 2.785813e-04	k: 309	n:1240000
KIAA1804   1240000 perm   887 sec   (1398 perm/sec)   p_kst 2.491935e-04   p_cons 1.830645e-03   p_joint 7.903226e-05

Joint ci ratio: 3.939591e-01	ci left: 6.364935e-05	ci right 9.554367e-05	k: 98	n:1250000
Cons ci ratio: 8.169798e-02	ci left: 1.763277e-03	ci right 1.914246e-03	k: 2297	n:1250000
KS ci ratio: 2.215437e-01	ci left: 2.226723e-04	ci right 2.788859e-04	k: 312	n:1250000
KIAA1804   1250000 perm   899 sec   (1391 perm/sec)   p_kst 2.496000e-04   p_cons 1.837600e-03   p_joint 7.840000e-05

Joint ci ratio: 3.919843e-01	ci left: 6.385942e-05	ci right 9.565708e-05	k: 99	n:1260000
Cons ci ratio: 8.146804e-02	ci left: 1.759390e-03	ci right 1.909582e-03	k: 2310	n:1260000
KS ci ratio: 2.204895e-01	ci left: 2.231543e-04	ci right 2.791851e-04	k: 315	n:1260000
KIAA1804   1260000 perm   911 sec   (1384 perm/sec)   p_kst 2.500000e-04   p_cons 1.833333e-03   p_joint 7.857143e-05

Joint ci ratio: 3.980003e-01	ci left: 6.122900e-05	ci right 9.230823e-05	k: 96	n:1270000
Cons ci ratio: 8.125755e-02	ci left: 1.754793e-03	ci right 1.904187e-03	k: 2322	n:1270000
KS ci ratio: 2.187653e-01	ci left: 2.251176e-04	ci right 2.811400e-04	k: 320	n:1270000
KIAA1804   1270000 perm   923 sec   (1376 perm/sec)   p_kst 2.519685e-04   p_cons 1.828346e-03   p_joint 7.559055e-05

Joint ci ratio: 3.939594e-01	ci left: 6.215756e-05	ci right 9.330438e-05	k: 98	n:1280000
Cons ci ratio: 8.087537e-02	ci left: 1.757923e-03	ci right 1.906846e-03	k: 2344	n:1280000
KS ci ratio: 2.180870e-01	ci left: 2.248359e-04	ci right 2.805914e-04	k: 322	n:1280000
KIAA1804   1280000 perm   935 sec   (1369 perm/sec)   p_kst 2.515625e-04   p_cons 1.831250e-03   p_joint 7.656250e-05

Joint ci ratio: 3.939596e-01	ci left: 6.167572e-05	ci right 9.258110e-05	k: 98	n:1290000
Cons ci ratio: 8.063516e-02	ci left: 1.754929e-03	ci right 1.903136e-03	k: 2358	n:1290000
KS ci ratio: 2.154350e-01	ci left: 2.289579e-04	ci right 2.849539e-04	k: 330	n:1290000
KIAA1804   1290000 perm   947 sec   (1362 perm/sec)   p_kst 2.558140e-04   p_cons 1.827907e-03   p_joint 7.596899e-05

Joint ci ratio: 4.064704e-01	ci left: 5.705036e-05	ci right 8.679148e-05	k: 92	n:1300000
Cons ci ratio: 8.026166e-02	ci left: 1.758012e-03	ci right 1.905760e-03	k: 2380	n:1300000
KS ci ratio: 2.147871e-01	ci left: 2.286523e-04	ci right 2.843832e-04	k: 332	n:1300000
KIAA1804   1300000 perm   959 sec   (1356 perm/sec)   p_kst 2.553846e-04   p_cons 1.830769e-03   p_joint 7.076923e-05

Joint ci ratio: 4.064705e-01	ci left: 5.661486e-05	ci right 8.612896e-05	k: 92	n:1310000
Cons ci ratio: 8.002686e-02	ci left: 1.755065e-03	ci right 1.902113e-03	k: 2394	n:1310000
KS ci ratio: 2.147873e-01	ci left: 2.269068e-04	ci right 2.822124e-04	k: 332	n:1310000
KIAA1804   1310000 perm   971 sec   (1349 perm/sec)   p_kst 2.534351e-04   p_cons 1.827481e-03   p_joint 7.022901e-05

Joint ci ratio: 4.043026e-01	ci left: 5.686628e-05	ci right 8.631089e-05	k: 93	n:1320000
Cons ci ratio: 7.977753e-02	ci left: 1.752905e-03	ci right 1.899294e-03	k: 2409	n:1320000
KS ci ratio: 2.131925e-01	ci left: 2.287728e-04	ci right 2.840649e-04	k: 337	n:1320000
KIAA1804   1320000 perm   983 sec   (1343 perm/sec)   p_kst 2.553030e-04   p_cons 1.825000e-03   p_joint 7.045455e-05

Joint ci ratio: 4.021690e-01	ci left: 5.711433e-05	ci right 8.648969e-05	k: 94	n:1330000
Cons ci ratio: 7.941576e-02	ci left: 1.755938e-03	ci right 1.901884e-03	k: 2431	n:1330000
KS ci ratio: 2.125646e-01	ci left: 2.284763e-04	ci right 2.835129e-04	k: 339	n:1330000
KIAA1804   1330000 perm   995 sec   (1336 perm/sec)   p_kst 2.548872e-04   p_cons 1.827820e-03   p_joint 7.067669e-05

Joint ci ratio: 4.000688e-01	ci left: 5.735908e-05	ci right 8.666542e-05	k: 95	n:1340000
Cons ci ratio: 7.904274e-02	ci left: 1.759658e-03	ci right 1.905195e-03	k: 2454	n:1340000
KS ci ratio: 2.113250e-01	ci left: 2.295979e-04	ci right 2.845404e-04	k: 343	n:1340000
KIAA1804   1340000 perm   1008 sec   (1330 perm/sec)   p_kst 2.559701e-04   p_cons 1.831343e-03   p_joint 7.089552e-05

Joint ci ratio: 3.980013e-01	ci left: 5.760060e-05	ci right 8.683815e-05	k: 96	n:1350000
Cons ci ratio: 7.875456e-02	ci left: 1.759694e-03	ci right 1.904679e-03	k: 2472	n:1350000
KS ci ratio: 2.107134e-01	ci left: 2.293003e-04	ci right 2.839924e-04	k: 345	n:1350000
KIAA1804   1350000 perm   1020 sec   (1324 perm/sec)   p_kst 2.555556e-04   p_cons 1.831111e-03   p_joint 7.111111e-05

Joint ci ratio: 3.980014e-01	ci left: 5.717706e-05	ci right 8.619964e-05	k: 96	n:1360000
Cons ci ratio: 7.858020e-02	ci left: 1.754684e-03	ci right 1.898921e-03	k: 2483	n:1360000
KS ci ratio: 2.104097e-01	ci left: 2.283108e-04	ci right 2.826782e-04	k: 346	n:1360000
KIAA1804   1360000 perm   1033 sec   (1317 perm/sec)   p_kst 2.544118e-04   p_cons 1.825735e-03   p_joint 7.058824e-05

Joint ci ratio: 3.959655e-01	ci left: 5.741676e-05	ci right 8.637289e-05	k: 97	n:1370000
Cons ci ratio: 7.834411e-02	ci left: 1.752610e-03	ci right 1.896224e-03	k: 2498	n:1370000
KS ci ratio: 2.101073e-01	ci left: 2.273358e-04	ci right 2.813832e-04	k: 347	n:1370000
KIAA1804   1370000 perm   1045 sec   (1311 perm/sec)   p_kst 2.532847e-04   p_cons 1.823358e-03   p_joint 7.080292e-05

Joint ci ratio: 3.959656e-01	ci left: 5.700070e-05	ci right 8.574700e-05	k: 97	n:1380000
Cons ci ratio: 7.806348e-02	ci left: 1.752698e-03	ci right 1.895782e-03	k: 2516	n:1380000
KS ci ratio: 2.089100e-01	ci left: 2.284349e-04	ci right 2.823946e-04	k: 351	n:1380000
KIAA1804   1380000 perm   1058 sec   (1305 perm/sec)   p_kst 2.543478e-04   p_cons 1.823188e-03   p_joint 7.028986e-05

Joint ci ratio: 3.959657e-01	ci left: 5.659062e-05	ci right 8.513012e-05	k: 97	n:1390000
Cons ci ratio: 7.781660e-02	ci left: 1.751375e-03	ci right 1.893879e-03	k: 2532	n:1390000
KS ci ratio: 2.083190e-01	ci left: 2.281552e-04	ci right 2.818769e-04	k: 353	n:1390000
KIAA1804   1390000 perm   1070 sec   (1299 perm/sec)   p_kst 2.539568e-04   p_cons 1.821583e-03   p_joint 6.978417e-05

Joint ci ratio: 3.939608e-01	ci left: 5.682974e-05	ci right 8.530693e-05	k: 98	n:1400000
Cons ci ratio: 7.757205e-02	ci left: 1.750072e-03	ci right 1.892002e-03	k: 2548	n:1400000
KS ci ratio: 2.071519e-01	ci left: 2.292340e-04	ci right 2.828690e-04	k: 357	n:1400000
KIAA1804   1400000 perm   1083 sec   (1293 perm/sec)   p_kst 2.550000e-04   p_cons 1.820000e-03   p_joint 7.000000e-05

Joint ci ratio: 3.900405e-01	ci left: 5.770532e-05	ci right 8.625948e-05	k: 100	n:1410000
Cons ci ratio: 7.739027e-02	ci left: 1.746006e-03	ci right 1.887259e-03	k: 2560	n:1410000
KS ci ratio: 2.065757e-01	ci left: 2.289532e-04	ci right 2.823547e-04	k: 359	n:1410000
KIAA1804   1410000 perm   1096 sec   (1286 perm/sec)   p_kst 2.546099e-04   p_cons 1.815603e-03   p_joint 7.092199e-05

Joint ci ratio: 3.900406e-01	ci left: 5.729894e-05	ci right 8.565202e-05	k: 100	n:1420000
Cons ci ratio: 7.722480e-02	ci left: 1.741307e-03	ci right 1.881865e-03	k: 2571	n:1420000
KS ci ratio: 2.062895e-01	ci left: 2.280087e-04	ci right 2.811069e-04	k: 360	n:1420000
KIAA1804   1420000 perm   1109 sec   (1280 perm/sec)   p_kst 2.535211e-04   p_cons 1.810563e-03   p_joint 7.042254e-05

Joint ci ratio: 3.881239e-01	ci left: 5.752914e-05	ci right 8.582044e-05	k: 101	n:1430000
Cons ci ratio: 7.691137e-02	ci left: 1.743532e-03	ci right 1.883673e-03	k: 2592	n:1430000
KS ci ratio: 2.048754e-01	ci left: 2.297308e-04	ci right 2.828173e-04	k: 365	n:1430000
KIAA1804   1430000 perm   1122 sec   (1274 perm/sec)   p_kst 2.552448e-04   p_cons 1.812587e-03   p_joint 7.062937e-05

Joint ci ratio: 3.881240e-01	ci left: 5.712963e-05	ci right 8.522447e-05	k: 101	n:1440000
Cons ci ratio: 7.673418e-02	ci left: 1.739597e-03	ci right 1.879085e-03	k: 2604	n:1440000
KS ci ratio: 2.043179e-01	ci left: 2.294531e-04	ci right 2.823132e-04	k: 367	n:1440000
KIAA1804   1440000 perm   1135 sec   (1268 perm/sec)   p_kst 2.548611e-04   p_cons 1.808333e-03   p_joint 7.013889e-05

Joint ci ratio: 3.881241e-01	ci left: 5.673563e-05	ci right 8.463671e-05	k: 101	n:1450000
Cons ci ratio: 7.645584e-02	ci left: 1.740453e-03	ci right 1.879480e-03	k: 2623	n:1450000
KS ci ratio: 2.029437e-01	ci left: 2.311432e-04	ci right 2.839901e-04	k: 372	n:1450000
KIAA1804   1450000 perm   1149 sec   (1262 perm/sec)   p_kst 2.565517e-04   p_cons 1.808966e-03   p_joint 6.965517e-05

Joint ci ratio: 3.843738e-01	ci left: 5.758387e-05	ci right 8.555926e-05	k: 103	n:1460000
Cons ci ratio: 7.610842e-02	ci left: 1.744657e-03	ci right 1.883359e-03	k: 2647	n:1460000
KS ci ratio: 2.026723e-01	ci left: 2.302101e-04	ci right 2.827646e-04	k: 373	n:1460000
KIAA1804   1460000 perm   1162 sec   (1257 perm/sec)   p_kst 2.554795e-04   p_cons 1.813014e-03   p_joint 7.054795e-05

Joint ci ratio: 3.843739e-01	ci left: 5.719214e-05	ci right 8.497723e-05	k: 103	n:1470000
Cons ci ratio: 7.580834e-02	ci left: 1.746803e-03	ci right 1.885104e-03	k: 2668	n:1470000
KS ci ratio: 2.021326e-01	ci left: 2.299357e-04	ci right 2.822705e-04	k: 375	n:1470000
KIAA1804   1470000 perm   1175 sec   (1251 perm/sec)   p_kst 2.551020e-04   p_cons 1.814966e-03   p_joint 7.006803e-05

Joint ci ratio: 3.843740e-01	ci left: 5.680571e-05	ci right 8.440306e-05	k: 103	n:1480000
Cons ci ratio: 7.556809e-02	ci left: 1.746269e-03	ci right 1.884071e-03	k: 2685	n:1480000
KS ci ratio: 2.013310e-01	ci left: 2.303067e-04	ci right 2.824925e-04	k: 378	n:1480000
KIAA1804   1480000 perm   1188 sec   (1245 perm/sec)   p_kst 2.554054e-04   p_cons 1.814189e-03   p_joint 6.959459e-05

Joint ci ratio: 3.843741e-01	ci left: 5.642446e-05	ci right 8.383660e-05	k: 103	n:1490000
Cons ci ratio: 7.534408e-02	ci left: 1.745085e-03	ci right 1.882367e-03	k: 2701	n:1490000
KS ci ratio: 2.013312e-01	ci left: 2.287610e-04	ci right 2.805966e-04	k: 378	n:1490000
KIAA1804   1490000 perm   1202 sec   (1239 perm/sec)   p_kst 2.536913e-04   p_cons 1.812752e-03   p_joint 6.912752e-05

Joint ci ratio: 3.843742e-01	ci left: 5.604829e-05	ci right 8.327770e-05	k: 103	n:1500000
Cons ci ratio: 7.505291e-02	ci left: 1.747188e-03	ci right 1.884081e-03	k: 2722	n:1500000
KS ci ratio: 2.010662e-01	ci left: 2.278690e-04	ci right 2.794262e-04	k: 379	n:1500000
KIAA1804   1500000 perm   1216 sec   (1234 perm/sec)   p_kst 2.526667e-04   p_cons 1.814667e-03   p_joint 6.866667e-05

Joint ci ratio: 3.825394e-01	ci left: 5.627553e-05	ci right 8.345198e-05	k: 104	n:1510000
Cons ci ratio: 7.475145e-02	ci left: 1.749913e-03	ci right 1.886446e-03	k: 2744	n:1510000
KS ci ratio: 2.002772e-01	ci left: 2.282469e-04	ci right 2.796621e-04	k: 382	n:1510000
KIAA1804   1510000 perm   1230 sec   (1228 perm/sec)   p_kst 2.529801e-04   p_cons 1.817219e-03   p_joint 6.887417e-05

Joint ci ratio: 3.825395e-01	ci left: 5.590529e-05	ci right 8.290296e-05	k: 104	n:1520000
Cons ci ratio: 7.453460e-02	ci left: 1.748731e-03	ci right 1.884758e-03	k: 2760	n:1520000
KS ci ratio: 2.000163e-01	ci left: 2.273702e-04	ci right 2.785131e-04	k: 383	n:1520000
KIAA1804   1520000 perm   1243 sec   (1222 perm/sec)   p_kst 2.519737e-04   p_cons 1.815789e-03   p_joint 6.842105e-05

Joint ci ratio: 3.825396e-01	ci left: 5.553989e-05	ci right 8.236111e-05	k: 104	n:1530000
Cons ci ratio: 7.417260e-02	ci left: 1.754620e-03	ci right 1.890414e-03	k: 2787	n:1530000
KS ci ratio: 1.994975e-01	ci left: 2.271259e-04	ci right 2.780652e-04	k: 385	n:1530000
KIAA1804   1530000 perm   1258 sec   (1217 perm/sec)   p_kst 2.516340e-04   p_cons 1.821569e-03   p_joint 6.797386e-05

Joint ci ratio: 3.843745e-01	ci left: 5.459249e-05	ci right 8.111465e-05	k: 103	n:1540000
Cons ci ratio: 7.396073e-02	ci left: 1.753424e-03	ci right 1.888721e-03	k: 2803	n:1540000
KS ci ratio: 1.987267e-01	ci left: 2.275020e-04	ci right 2.783046e-04	k: 388	n:1540000
KIAA1804   1540000 perm   1272 sec   (1211 perm/sec)   p_kst 2.519481e-04   p_cons 1.820130e-03   p_joint 6.688312e-05

Joint ci ratio: 3.843746e-01	ci left: 5.424027e-05	ci right 8.059134e-05	k: 103	n:1550000
Cons ci ratio: 7.375067e-02	ci left: 1.752243e-03	ci right 1.887048e-03	k: 2819	n:1550000
KS ci ratio: 1.982179e-01	ci left: 2.272604e-04	ci right 2.778635e-04	k: 390	n:1550000
KIAA1804   1550000 perm   1286 sec   (1205 perm/sec)   p_kst 2.516129e-04   p_cons 1.818710e-03   p_joint 6.645161e-05

Joint ci ratio: 4.043048e-01	ci left: 4.811757e-05	ci right 7.303238e-05	k: 93	n:1560000
Cons ci ratio: 7.347752e-02	ci left: 1.754225e-03	ci right 1.888661e-03	k: 2840	n:1560000
KS ci ratio: 1.972116e-01	ci left: 2.282408e-04	ci right 2.787732e-04	k: 394	n:1560000
KIAA1804   1560000 perm   1300 sec   (1200 perm/sec)   p_kst 2.525641e-04   p_cons 1.820513e-03   p_joint 5.961538e-05

Joint ci ratio: 4.021712e-01	ci left: 4.838343e-05	ci right 7.326842e-05	k: 94	n:1570000
Cons ci ratio: 7.318178e-02	ci left: 1.757432e-03	ci right 1.891550e-03	k: 2863	n:1570000
KS ci ratio: 1.962205e-01	ci left: 2.292094e-04	ci right 2.796706e-04	k: 398	n:1570000
KIAA1804   1570000 perm   1314 sec   (1195 perm/sec)   p_kst 2.535032e-04   p_cons 1.823567e-03   p_joint 5.987261e-05

Joint ci ratio: 3.980034e-01	ci left: 4.921565e-05	ci right 7.419724e-05	k: 96	n:1580000
Cons ci ratio: 7.292754e-02	ci left: 1.758737e-03	ci right 1.892467e-03	k: 2883	n:1580000
KS ci ratio: 1.952441e-01	ci left: 2.301663e-04	ci right 2.805561e-04	k: 402	n:1580000
KIAA1804   1580000 perm   1328 sec   (1189 perm/sec)   p_kst 2.544304e-04   p_cons 1.824684e-03   p_joint 6.075949e-05

Joint ci ratio: 3.980034e-01	ci left: 4.890612e-05	ci right 7.373060e-05	k: 96	n:1590000
Cons ci ratio: 7.278903e-02	ci left: 1.754467e-03	ci right 1.887609e-03	k: 2894	n:1590000
KS ci ratio: 1.942823e-01	ci left: 2.311117e-04	ci right 2.814298e-04	k: 406	n:1590000
KIAA1804   1590000 perm   1343 sec   (1184 perm/sec)   p_kst 2.553459e-04   p_cons 1.820126e-03   p_joint 6.037736e-05

Joint ci ratio: 4.043051e-01	ci left: 4.691463e-05	ci right 7.120659e-05	k: 93	n:1600000
Cons ci ratio: 7.248904e-02	ci left: 1.758230e-03	ci right 1.891084e-03	k: 2918	n:1600000
KS ci ratio: 1.935701e-01	ci left: 2.314513e-04	ci right 2.816368e-04	k: 409	n:1600000
KIAA1804   1600000 perm   1357 sec   (1179 perm/sec)   p_kst 2.556250e-04   p_cons 1.823750e-03   p_joint 5.812500e-05

Joint ci ratio: 4.043052e-01	ci left: 4.662323e-05	ci right 7.076431e-05	k: 93	n:1610000
Cons ci ratio: 7.235301e-02	ci left: 1.754017e-03	ci right 1.886294e-03	k: 2929	n:1610000
KS ci ratio: 1.930998e-01	ci left: 2.311958e-04	ci right 2.811898e-04	k: 411	n:1610000
KIAA1804   1610000 perm   1372 sec   (1173 perm/sec)   p_kst 2.552795e-04   p_cons 1.819255e-03   p_joint 5.776398e-05

Joint ci ratio: 4.000713e-01	ci left: 4.744511e-05	ci right 7.168631e-05	k: 95	n:1620000
Cons ci ratio: 7.210728e-02	ci left: 1.755313e-03	ci right 1.887219e-03	k: 2949	n:1620000
KS ci ratio: 1.924005e-01	ci left: 2.315311e-04	ci right 2.813952e-04	k: 414	n:1620000
KIAA1804   1620000 perm   1387 sec   (1168 perm/sec)   p_kst 2.555556e-04   p_cons 1.820370e-03   p_joint 5.864198e-05

Joint ci ratio: 3.980037e-01	ci left: 4.770596e-05	ci right 7.192127e-05	k: 96	n:1630000
Cons ci ratio: 7.190044e-02	ci left: 1.754786e-03	ci right 1.886258e-03	k: 2966	n:1630000
KS ci ratio: 1.919386e-01	ci left: 2.312787e-04	ci right 2.809548e-04	k: 416	n:1630000
KIAA1804   1630000 perm   1401 sec   (1163 perm/sec)   p_kst 2.552147e-04   p_cons 1.819632e-03   p_joint 5.889571e-05

Joint ci ratio: 3.980038e-01	ci left: 4.741507e-05	ci right 7.148273e-05	k: 96	n:1640000
Cons ci ratio: 7.164727e-02	ci left: 1.756661e-03	ci right 1.887791e-03	k: 2987	n:1640000
KS ci ratio: 1.919388e-01	ci left: 2.298684e-04	ci right 2.792417e-04	k: 416	n:1640000
KIAA1804   1640000 perm   1416 sec   (1158 perm/sec)   p_kst 2.536585e-04   p_cons 1.821341e-03   p_joint 5.853659e-05

Joint ci ratio: 3.980039e-01	ci left: 4.712771e-05	ci right 7.104950e-05	k: 96	n:1650000
Cons ci ratio: 7.133740e-02	ci left: 1.761491e-03	ci right 1.892389e-03	k: 3013	n:1650000
KS ci ratio: 1.919389e-01	ci left: 2.284753e-04	ci right 2.775493e-04	k: 416	n:1650000
KIAA1804   1650000 perm   1430 sec   (1154 perm/sec)   p_kst 2.521212e-04   p_cons 1.826061e-03   p_joint 5.818182e-05

Joint ci ratio: 3.980039e-01	ci left: 4.684380e-05	ci right 7.062149e-05	k: 96	n:1660000
Cons ci ratio: 7.105494e-02	ci left: 1.765080e-03	ci right 1.895704e-03	k: 3037	n:1660000
KS ci ratio: 1.903477e-01	ci left: 2.311140e-04	ci right 2.802957e-04	k: 423	n:1660000
KIAA1804   1660000 perm   1445 sec   (1149 perm/sec)   p_kst 2.548193e-04   p_cons 1.829518e-03   p_joint 5.783133e-05

Joint ci ratio: 3.980040e-01	ci left: 4.656330e-05	ci right 7.019861e-05	k: 96	n:1670000
Cons ci ratio: 7.090351e-02	ci left: 1.762157e-03	ci right 1.892275e-03	k: 3050	n:1670000
KS ci ratio: 1.894560e-01	ci left: 2.320115e-04	ci right 2.811262e-04	k: 427	n:1670000
KIAA1804   1670000 perm   1460 sec   (1144 perm/sec)   p_kst 2.556886e-04   p_cons 1.826347e-03   p_joint 5.748503e-05

Joint ci ratio: 3.980041e-01	ci left: 4.628614e-05	ci right 6.978077e-05	k: 96	n:1680000
Cons ci ratio: 7.067222e-02	ci left: 1.763362e-03	ci right 1.893127e-03	k: 3070	n:1680000
KS ci ratio: 1.892352e-01	ci left: 2.311974e-04	ci right 2.800763e-04	k: 428	n:1680000
KIAA1804   1680000 perm   1475 sec   (1139 perm/sec)   p_kst 2.547619e-04   p_cons 1.827381e-03   p_joint 5.714286e-05

Joint ci ratio: 3.959682e-01	ci left: 4.654489e-05	ci right 7.001836e-05	k: 97	n:1690000
Cons ci ratio: 7.051177e-02	ci left: 1.761065e-03	ci right 1.890356e-03	k: 3084	n:1690000
KS ci ratio: 1.887956e-01	ci left: 2.309568e-04	ci right 2.796584e-04	k: 430	n:1690000
KIAA1804   1690000 perm   1490 sec   (1134 perm/sec)   p_kst 2.544379e-04   p_cons 1.824852e-03   p_joint 5.739645e-05

Joint ci ratio: 3.959683e-01	ci left: 4.627110e-05	ci right 6.960649e-05	k: 97	n:1700000
Cons ci ratio: 7.031831e-02	ci left: 1.760530e-03	ci right 1.889412e-03	k: 3101	n:1700000
KS ci ratio: 1.887958e-01	ci left: 2.295983e-04	ci right 2.780134e-04	k: 430	n:1700000
KIAA1804   1700000 perm   1505 sec   (1130 perm/sec)   p_kst 2.529412e-04   p_cons 1.824118e-03   p_joint 5.705882e-05

Joint ci ratio: 3.939633e-01	ci left: 4.652722e-05	ci right 6.984202e-05	k: 98	n:1710000
Cons ci ratio: 7.012644e-02	ci left: 1.760001e-03	ci right 1.888479e-03	k: 3118	n:1710000
KS ci ratio: 1.883593e-01	ci left: 2.293700e-04	ci right 2.776123e-04	k: 432	n:1710000
KIAA1804   1710000 perm   1520 sec   (1125 perm/sec)   p_kst 2.526316e-04   p_cons 1.823392e-03   p_joint 5.730994e-05

Joint ci ratio: 3.900430e-01	ci left: 4.730489e-05	ci right 7.071281e-05	k: 100	n:1720000
Cons ci ratio: 6.989150e-02	ci left: 1.761764e-03	ci right 1.889922e-03	k: 3139	n:1720000
KS ci ratio: 1.879258e-01	ci left: 2.291444e-04	ci right 2.772158e-04	k: 434	n:1720000
KIAA1804   1720000 perm   1535 sec   (1120 perm/sec)   p_kst 2.523256e-04   p_cons 1.825000e-03   p_joint 5.813953e-05

Joint ci ratio: 3.900431e-01	ci left: 4.703145e-05	ci right 7.030407e-05	k: 100	n:1730000
Cons ci ratio: 6.972522e-02	ci left: 1.760100e-03	ci right 1.887820e-03	k: 3154	n:1730000
KS ci ratio: 1.872811e-01	ci left: 2.294726e-04	ci right 2.774288e-04	k: 437	n:1730000
KIAA1804   1730000 perm   1550 sec   (1116 perm/sec)   p_kst 2.526012e-04   p_cons 1.823121e-03   p_joint 5.780347e-05

Joint ci ratio: 3.900431e-01	ci left: 4.676115e-05	ci right 6.990002e-05	k: 100	n:1740000
Cons ci ratio: 6.952717e-02	ci left: 1.760149e-03	ci right 1.887495e-03	k: 3172	n:1740000
KS ci ratio: 1.866430e-01	ci left: 2.297972e-04	ci right 2.776391e-04	k: 440	n:1740000
KIAA1804   1740000 perm   1566 sec   (1111 perm/sec)   p_kst 2.528736e-04   p_cons 1.822989e-03   p_joint 5.747126e-05

Joint ci ratio: 3.900432e-01	ci left: 4.649394e-05	ci right 6.950060e-05	k: 100	n:1750000
Cons ci ratio: 6.927645e-02	ci left: 1.763006e-03	ci right 1.890080e-03	k: 3195	n:1750000
KS ci ratio: 1.860113e-01	ci left: 2.301184e-04	ci right 2.778468e-04	k: 443	n:1750000
KIAA1804   1750000 perm   1581 sec   (1107 perm/sec)   p_kst 2.531429e-04   p_cons 1.825714e-03   p_joint 5.714286e-05

Joint ci ratio: 3.881265e-01	ci left: 4.674237e-05	ci right 6.972920e-05	k: 101	n:1760000
Cons ci ratio: 6.912530e-02	ci left: 1.760806e-03	ci right 1.887433e-03	k: 3209	n:1760000
KS ci ratio: 1.853860e-01	ci left: 2.304362e-04	ci right 2.780518e-04	k: 446	n:1760000
KIAA1804   1760000 perm   1597 sec   (1102 perm/sec)   p_kst 2.534091e-04   p_cons 1.823295e-03   p_joint 5.738636e-05

Joint ci ratio: 3.881265e-01	ci left: 4.647829e-05	ci right 6.933526e-05	k: 101	n:1770000
Cons ci ratio: 6.890024e-02	ci left: 1.762517e-03	ci right 1.888839e-03	k: 3230	n:1770000
KS ci ratio: 1.847670e-01	ci left: 2.307507e-04	ci right 2.782542e-04	k: 449	n:1770000
KIAA1804   1770000 perm   1613 sec   (1098 perm/sec)   p_kst 2.536723e-04   p_cons 1.824859e-03   p_joint 5.706215e-05

Joint ci ratio: 3.843763e-01	ci left: 4.723166e-05	ci right 7.017791e-05	k: 103	n:1780000
Cons ci ratio: 6.861398e-02	ci left: 1.767524e-03	ci right 1.893657e-03	k: 3257	n:1780000
KS ci ratio: 1.835473e-01	ci left: 2.326698e-04	ci right 2.802170e-04	k: 455	n:1780000
KIAA1804   1780000 perm   1628 sec   (1093 perm/sec)   p_kst 2.556180e-04   p_cons 1.829775e-03   p_joint 5.786517e-05

Joint ci ratio: 3.900435e-01	ci left: 4.545497e-05	ci right 6.794752e-05	k: 100	n:1790000
Cons ci ratio: 6.847760e-02	ci left: 1.764787e-03	ci right 1.890465e-03	k: 3270	n:1790000
KS ci ratio: 1.833464e-01	ci left: 2.319030e-04	ci right 2.792358e-04	k: 456	n:1790000
KIAA1804   1790000 perm   1644 sec   (1089 perm/sec)   p_kst 2.547486e-04   p_cons 1.826816e-03   p_joint 5.586592e-05

Joint ci ratio: 3.900435e-01	ci left: 4.520244e-05	ci right 6.757004e-05	k: 100	n:1800000
Cons ci ratio: 6.830036e-02	ci left: 1.764266e-03	ci right 1.889568e-03	k: 3287	n:1800000
KS ci ratio: 1.833465e-01	ci left: 2.306146e-04	ci right 2.776845e-04	k: 456	n:1800000
KIAA1804   1800000 perm   1660 sec   (1084 perm/sec)   p_kst 2.533333e-04   p_cons 1.826111e-03   p_joint 5.555556e-05

Joint ci ratio: 3.900436e-01	ci left: 4.495270e-05	ci right 6.719672e-05	k: 100	n:1810000
Cons ci ratio: 6.815550e-02	ci left: 1.762121e-03	ci right 1.886995e-03	k: 3301	n:1810000
KS ci ratio: 1.833467e-01	ci left: 2.293405e-04	ci right 2.761504e-04	k: 456	n:1810000
KIAA1804   1810000 perm   1676 sec   (1080 perm/sec)   p_kst 2.519337e-04   p_cons 1.823757e-03   p_joint 5.524862e-05

Joint ci ratio: 3.900436e-01	ci left: 4.470571e-05	ci right 6.682751e-05	k: 100	n:1820000
Cons ci ratio: 6.798075e-02	ci left: 1.761621e-03	ci right 1.886127e-03	k: 3318	n:1820000
KS ci ratio: 1.827478e-01	ci left: 2.296532e-04	ci right 2.763568e-04	k: 459	n:1820000
KIAA1804   1820000 perm   1692 sec   (1075 perm/sec)   p_kst 2.521978e-04   p_cons 1.823077e-03   p_joint 5.494505e-05

Joint ci ratio: 3.881269e-01	ci left: 4.495440e-05	ci right 6.706198e-05	k: 101	n:1830000
Cons ci ratio: 6.774633e-02	ci left: 1.764350e-03	ci right 1.888602e-03	k: 3341	n:1830000
KS ci ratio: 1.825496e-01	ci left: 2.289197e-04	ci right 2.754181e-04	k: 460	n:1830000
KIAA1804   1830000 perm   1709 sec   (1071 perm/sec)   p_kst 2.513661e-04   p_cons 1.825683e-03   p_joint 5.519126e-05

Joint ci ratio: 3.881270e-01	ci left: 4.471008e-05	ci right 6.669752e-05	k: 101	n:1840000
Cons ci ratio: 6.759487e-02	ci left: 1.762775e-03	ci right 1.886628e-03	k: 3356	n:1840000
KS ci ratio: 1.823520e-01	ci left: 2.281942e-04	ci right 2.744896e-04	k: 461	n:1840000
KIAA1804   1840000 perm   1725 sec   (1066 perm/sec)   p_kst 2.505435e-04   p_cons 1.823913e-03   p_joint 5.489130e-05

Joint ci ratio: 2.484031e-01	ci left: 1.178886e-04	ci right 1.518169e-04	k: 248	n:1850000
Cons ci ratio: 5.975171e-02	ci left: 2.251715e-03	ci right 2.390931e-03	k: 4293	n:1850000
KS ci ratio: 1.817628e-01	ci left: 2.285085e-04	ci right 2.747013e-04	k: 464	n:1850000
KIAA1804   1850000 perm   1742 sec   (1062 perm/sec)   p_kst 2.508108e-04   p_cons 2.320541e-03   p_joint 1.340541e-04

Joint ci ratio: 2.479058e-01	ci left: 1.177590e-04	ci right 1.515717e-04	k: 249	n:1860000
Cons ci ratio: 5.958541e-02	ci left: 2.252320e-03	ci right 2.391172e-03	k: 4317	n:1860000
KS ci ratio: 1.815677e-01	ci left: 2.277931e-04	ci right 2.737864e-04	k: 465	n:1860000
KIAA1804   1860000 perm   1758 sec   (1058 perm/sec)   p_kst 2.500000e-04   p_cons 2.320968e-03   p_joint 1.338710e-04

Joint ci ratio: 2.464316e-01	ci left: 1.186342e-04	ci right 1.524645e-04	k: 252	n:1870000
Cons ci ratio: 5.942049e-02	ci left: 2.252919e-03	ci right 2.391410e-03	k: 4341	n:1870000
KS ci ratio: 1.807933e-01	ci left: 2.286170e-04	ci right 2.745583e-04	k: 469	n:1870000
KIAA1804   1870000 perm   1775 sec   (1054 perm/sec)   p_kst 2.508021e-04   p_cons 2.321390e-03   p_joint 1.347594e-04

Joint ci ratio: 2.484034e-01	ci left: 1.160074e-04	ci right 1.493943e-04	k: 248	n:1880000
Cons ci ratio: 5.920938e-02	ci left: 2.257180e-03	ci right 2.395424e-03	k: 4372	n:1880000
KS ci ratio: 1.806014e-01	ci left: 2.279088e-04	ci right 2.736538e-04	k: 470	n:1880000
KIAA1804   1880000 perm   1791 sec   (1049 perm/sec)   p_kst 2.500000e-04   p_cons 2.325532e-03   p_joint 1.319149e-04

Joint ci ratio: 2.484035e-01	ci left: 1.153936e-04	ci right 1.486038e-04	k: 248	n:1890000
Cons ci ratio: 5.907450e-02	ci left: 2.255663e-03	ci right 2.393488e-03	k: 4392	n:1890000
KS ci ratio: 1.800289e-01	ci left: 2.282186e-04	ci right 2.738648e-04	k: 473	n:1890000
KIAA1804   1890000 perm   1808 sec   (1045 perm/sec)   p_kst 2.502646e-04   p_cons 2.323810e-03   p_joint 1.312169e-04

Joint ci ratio: 2.479062e-01	ci left: 1.152799e-04	ci right 1.483807e-04	k: 249	n:1900000
Cons ci ratio: 5.890709e-02	ci left: 2.256755e-03	ci right 2.394243e-03	k: 4417	n:1900000
KS ci ratio: 1.789001e-01	ci left: 2.300335e-04	ci right 2.757230e-04	k: 479	n:1900000
KIAA1804   1900000 perm   1825 sec   (1041 perm/sec)   p_kst 2.521053e-04   p_cons 2.324737e-03   p_joint 1.310526e-04

Joint ci ratio: 2.469204e-01	ci left: 1.156585e-04	ci right 1.487157e-04	k: 251	n:1910000
Cons ci ratio: 5.870800e-02	ci left: 2.260415e-03	ci right 2.397645e-03	k: 4447	n:1910000
KS ci ratio: 1.783436e-01	ci left: 2.303296e-04	ci right 2.759202e-04	k: 482	n:1910000
KIAA1804   1910000 perm   1842 sec   (1037 perm/sec)   p_kst 2.523560e-04   p_cons 2.328272e-03   p_joint 1.314136e-04

Joint ci ratio: 2.469205e-01	ci left: 1.150561e-04	ci right 1.479412e-04	k: 251	n:1920000
Cons ci ratio: 5.855680e-02	ci left: 2.260446e-03	ci right 2.397312e-03	k: 4470	n:1920000
KS ci ratio: 1.781593e-01	ci left: 2.296276e-04	ci right 2.750272e-04	k: 483	n:1920000
KIAA1804   1920000 perm   1859 sec   (1033 perm/sec)   p_kst 2.515625e-04   p_cons 2.328125e-03   p_joint 1.307292e-04

Joint ci ratio: 2.562428e-01	ci left: 1.057213e-04	ci right 1.372617e-04	k: 233	n:1930000
Cons ci ratio: 5.835473e-02	ci left: 2.264561e-03	ci right 2.401187e-03	k: 4501	n:1930000
KS ci ratio: 1.774276e-01	ci left: 2.304181e-04	ci right 2.757668e-04	k: 487	n:1930000
KIAA1804   1930000 perm   1876 sec   (1029 perm/sec)   p_kst 2.523316e-04   p_cons 2.332124e-03   p_joint 1.207254e-04

Joint ci ratio: 2.562429e-01	ci left: 1.051763e-04	ci right 1.365542e-04	k: 233	n:1940000
Cons ci ratio: 5.821269e-02	ci left: 2.264063e-03	ci right 2.400316e-03	k: 4523	n:1940000
KS ci ratio: 1.772461e-01	ci left: 2.297230e-04	ci right 2.748837e-04	k: 488	n:1940000
KIAA1804   1940000 perm   1893 sec   (1025 perm/sec)   p_kst 2.515464e-04   p_cons 2.331443e-03   p_joint 1.201031e-04

Joint ci ratio: 2.551548e-01	ci left: 1.055969e-04	ci right 1.369451e-04	k: 235	n:1950000
Cons ci ratio: 5.805249e-02	ci left: 2.265087e-03	ci right 2.401013e-03	k: 4548	n:1950000
KS ci ratio: 1.767049e-01	ci left: 2.300152e-04	ci right 2.750806e-04	k: 491	n:1950000
KIAA1804   1950000 perm   1910 sec   (1021 perm/sec)   p_kst 2.517949e-04   p_cons 2.332308e-03   p_joint 1.205128e-04

Joint ci ratio: 2.535482e-01	ci left: 1.064912e-04	ci right 1.378744e-04	k: 238	n:1960000
Cons ci ratio: 5.786191e-02	ci left: 2.268615e-03	ci right 2.404291e-03	k: 4578	n:1960000
KS ci ratio: 1.759909e-01	ci left: 2.307924e-04	ci right 2.758079e-04	k: 495	n:1960000
KIAA1804   1960000 perm   1927 sec   (1017 perm/sec)   p_kst 2.525510e-04   p_cons 2.335714e-03   p_joint 1.214286e-04

Joint ci ratio: 2.530194e-01	ci left: 1.064260e-04	ci right 1.377143e-04	k: 239	n:1970000
Cons ci ratio: 5.772343e-02	ci left: 2.268105e-03	ci right 2.403415e-03	k: 4600	n:1970000
KS ci ratio: 1.752854e-01	ci left: 2.315621e-04	ci right 2.765275e-04	k: 499	n:1970000
KIAA1804   1970000 perm   1945 sec   (1013 perm/sec)   p_kst 2.532995e-04   p_cons 2.335025e-03   p_joint 1.213198e-04

Joint ci ratio: 2.519717e-01	ci left: 1.068347e-04	ci right 1.380927e-04	k: 241	n:1980000
Cons ci ratio: 5.760467e-02	ci left: 2.266108e-03	ci right 2.401011e-03	k: 4619	n:1980000
KS ci ratio: 1.747619e-01	ci left: 2.318413e-04	ci right 2.767123e-04	k: 502	n:1980000
KIAA1804   1980000 perm   1962 sec   (1009 perm/sec)   p_kst 2.535354e-04   p_cons 2.332828e-03   p_joint 1.217172e-04

Joint ci ratio: 2.530196e-01	ci left: 1.053564e-04	ci right 1.363303e-04	k: 239	n:1990000
Cons ci ratio: 5.746182e-02	ci left: 2.266112e-03	ci right 2.400670e-03	k: 4642	n:1990000
KS ci ratio: 1.740711e-01	ci left: 2.325986e-04	ci right 2.774195e-04	k: 506	n:1990000
KIAA1804   1990000 perm   1979 sec   (1005 perm/sec)   p_kst 2.542714e-04   p_cons 2.332663e-03   p_joint 1.201005e-04

Joint ci ratio: 2.530197e-01	ci left: 1.048296e-04	ci right 1.356486e-04	k: 239	n:2000000
Cons ci ratio: 5.736317e-02	ci left: 2.262666e-03	ci right 2.396781e-03	k: 4658	n:2000000
KS ci ratio: 1.735583e-01	ci left: 2.328704e-04	ci right 2.775976e-04	k: 509	n:2000000
KIAA1804   2000000 perm   1997 sec   (1002 perm/sec)   p_kst 2.545000e-04   p_cons 2.329000e-03   p_joint 1.195000e-04

Joint ci ratio: 2.530197e-01	ci left: 1.043080e-04	ci right 1.349737e-04	k: 239	n:2010000
Cons ci ratio: 5.724662e-02	ci left: 2.260726e-03	ci right 2.394445e-03	k: 4677	n:2010000
KS ci ratio: 1.728816e-01	ci left: 2.336156e-04	ci right 2.782928e-04	k: 513	n:2010000
KIAA1804   2010000 perm   2014 sec   (998 perm/sec)   p_kst 2.552239e-04   p_cons 2.326866e-03   p_joint 1.189055e-04

Joint ci ratio: 2.519720e-01	ci left: 1.047191e-04	ci right 1.353582e-04	k: 241	n:2020000
Cons ci ratio: 5.711859e-02	ci left: 2.259782e-03	ci right 2.393136e-03	k: 4698	n:2020000
KS ci ratio: 1.720468e-01	ci left: 2.348275e-04	ci right 2.794970e-04	k: 518	n:2020000
KIAA1804   2020000 perm   2032 sec   (994 perm/sec)   p_kst 2.564356e-04   p_cons 2.325743e-03   p_joint 1.193069e-04

Joint ci ratio: 2.514530e-01	ci left: 1.046648e-04	ci right 1.352150e-04	k: 242	n:2030000
Cons ci ratio: 5.696723e-02	ci left: 2.260790e-03	ci right 2.393838e-03	k: 4723	n:2030000
KS ci ratio: 1.717162e-01	ci left: 2.346136e-04	ci right 2.791478e-04	k: 520	n:2030000
KIAA1804   2030000 perm   2049 sec   (991 perm/sec)   p_kst 2.561576e-04   p_cons 2.326601e-03   p_joint 1.192118e-04

Joint ci ratio: 2.509372e-01	ci left: 1.046111e-04	ci right 1.350732e-04	k: 243	n:2040000
Cons ci ratio: 5.682906e-02	ci left: 2.260821e-03	ci right 2.393539e-03	k: 4746	n:2040000
KS ci ratio: 1.710608e-01	ci left: 2.353402e-04	ci right 2.798242e-04	k: 524	n:2040000
KIAA1804   2040000 perm   2067 sec   (987 perm/sec)   p_kst 2.568627e-04   p_cons 2.326471e-03   p_joint 1.191176e-04

Joint ci ratio: 2.499150e-01	ci left: 1.050152e-04	ci right 1.354510e-04	k: 245	n:2050000
Cons ci ratio: 5.670977e-02	ci left: 2.259411e-03	ci right 2.391758e-03	k: 4766	n:2050000
KS ci ratio: 1.705741e-01	ci left: 2.355930e-04	ci right 2.799851e-04	k: 527	n:2050000
KIAA1804   2050000 perm   2085 sec   (983 perm/sec)   p_kst 2.570732e-04   p_cons 2.324878e-03   p_joint 1.195122e-04

Joint ci ratio: 2.494086e-01	ci left: 1.049604e-04	ci right 1.353092e-04	k: 246	n:2060000
Cons ci ratio: 5.654979e-02	ci left: 2.261364e-03	ci right 2.393439e-03	k: 4793	n:2060000
KS ci ratio: 1.699316e-01	ci left: 2.363084e-04	ci right 2.806504e-04	k: 531	n:2060000
KIAA1804   2060000 perm   2103 sec   (980 perm/sec)   p_kst 2.577670e-04   p_cons 2.326699e-03   p_joint 1.194175e-04

Joint ci ratio: 2.494087e-01	ci left: 1.044534e-04	ci right 1.346556e-04	k: 246	n:2070000
Cons ci ratio: 5.638530e-02	ci left: 2.263775e-03	ci right 2.395594e-03	k: 4821	n:2070000
KS ci ratio: 1.694544e-01	ci left: 2.365545e-04	ci right 2.808053e-04	k: 534	n:2070000
KIAA1804   2070000 perm   2121 sec   (976 perm/sec)   p_kst 2.579710e-04   p_cons 2.328986e-03   p_joint 1.188406e-04

Joint ci ratio: 2.540813e-01	ci left: 9.989720e-05	ci right 1.294089e-04	k: 237	n:2080000
Cons ci ratio: 5.626878e-02	ci left: 2.262372e-03	ci right 2.393828e-03	k: 4841	n:2080000
KS ci ratio: 1.689813e-01	ci left: 2.367985e-04	ci right 2.809586e-04	k: 537	n:2080000
KIAA1804   2080000 perm   2139 sec   (972 perm/sec)   p_kst 2.581731e-04   p_cons 2.327404e-03   p_joint 1.139423e-04

Joint ci ratio: 2.540813e-01	ci left: 9.941922e-05	ci right 1.287897e-04	k: 237	n:2090000
Cons ci ratio: 5.616455e-02	ci left: 2.260038e-03	ci right 2.391108e-03	k: 4859	n:2090000
KS ci ratio: 1.686681e-01	ci left: 2.365820e-04	ci right 2.806117e-04	k: 539	n:2090000
KIAA1804   2090000 perm   2157 sec   (969 perm/sec)   p_kst 2.578947e-04   p_cons 2.324880e-03   p_joint 1.133971e-04

Joint ci ratio: 2.540814e-01	ci left: 9.894579e-05	ci right 1.281764e-04	k: 237	n:2100000
Cons ci ratio: 5.602638e-02	ci left: 2.260544e-03	ci right 2.391310e-03	k: 4883	n:2100000
KS ci ratio: 1.683566e-01	ci left: 2.363676e-04	ci right 2.802679e-04	k: 541	n:2100000
KIAA1804   2100000 perm   2175 sec   (965 perm/sec)   p_kst 2.576190e-04   p_cons 2.325238e-03   p_joint 1.128571e-04

Joint ci ratio: 2.540815e-01	ci left: 9.847685e-05	ci right 1.275690e-04	k: 237	n:2110000
Cons ci ratio: 5.592349e-02	ci left: 2.258242e-03	ci right 2.388627e-03	k: 4901	n:2110000
KS ci ratio: 1.680469e-01	ci left: 2.361553e-04	ci right 2.799274e-04	k: 543	n:2110000
KIAA1804   2110000 perm   2193 sec   (962 perm/sec)   p_kst 2.573460e-04   p_cons 2.322749e-03   p_joint 1.123223e-04

Joint ci ratio: 2.579030e-01	ci left: 9.492225e-05	ci right 1.234540e-04	k: 230	n:2120000
Cons ci ratio: 5.575872e-02	ci left: 2.261078e-03	ci right 2.391230e-03	k: 4930	n:2120000
KS ci ratio: 1.678927e-01	ci left: 2.354933e-04	ci right 2.790985e-04	k: 544	n:2120000
KIAA1804   2120000 perm   2212 sec   (958 perm/sec)   p_kst 2.566038e-04   p_cons 2.325472e-03   p_joint 1.084906e-04

Joint ci ratio: 2.573465e-01	ci left: 9.491578e-05	ci right 1.233741e-04	k: 231	n:2130000
Cons ci ratio: 5.564603e-02	ci left: 2.259722e-03	ci right 2.389524e-03	k: 4950	n:2130000
KS ci ratio: 1.672799e-01	ci left: 2.361868e-04	ci right 2.797448e-04	k: 548	n:2130000
KIAA1804   2130000 perm   2230 sec   (955 perm/sec)   p_kst 2.572770e-04   p_cons 2.323944e-03   p_joint 1.084507e-04

Joint ci ratio: 2.567937e-01	ci left: 9.490943e-05	ci right 1.232949e-04	k: 232	n:2140000
Cons ci ratio: 5.553962e-02	ci left: 2.257917e-03	ci right 2.387360e-03	k: 4969	n:2140000
KS ci ratio: 1.669761e-01	ci left: 2.359787e-04	ci right 2.794112e-04	k: 550	n:2140000
KIAA1804   2140000 perm   2249 sec   (952 perm/sec)   p_kst 2.570093e-04   p_cons 2.321963e-03   p_joint 1.084112e-04

Joint ci ratio: 2.556986e-01	ci left: 9.533849e-05	ci right 1.237113e-04	k: 234	n:2150000
Cons ci ratio: 5.542268e-02	ci left: 2.257047e-03	ci right 2.386159e-03	k: 4990	n:2150000
KS ci ratio: 1.663732e-01	ci left: 2.366639e-04	ci right 2.800496e-04	k: 554	n:2150000
KIAA1804   2150000 perm   2267 sec   (948 perm/sec)   p_kst 2.576744e-04   p_cons 2.320930e-03   p_joint 1.088372e-04

Joint ci ratio: 2.530208e-01	ci left: 9.706437e-05	ci right 1.256006e-04	k: 239	n:2160000
Cons ci ratio: 5.526229e-02	ci left: 2.259838e-03	ci right 2.388724e-03	k: 5019	n:2160000
KS ci ratio: 1.659254e-01	ci left: 2.368994e-04	ci right 2.801997e-04	k: 557	n:2160000
KIAA1804   2160000 perm   2286 sec   (945 perm/sec)   p_kst 2.578704e-04   p_cons 2.323611e-03   p_joint 1.106481e-04

Joint ci ratio: 2.530209e-01	ci left: 9.661707e-05	ci right 1.250218e-04	k: 239	n:2170000
Cons ci ratio: 5.509234e-02	ci left: 2.263513e-03	ci right 2.392199e-03	k: 5050	n:2170000
KS ci ratio: 1.659255e-01	ci left: 2.358077e-04	ci right 2.789085e-04	k: 557	n:2170000
KIAA1804   2170000 perm   2305 sec   (941 perm/sec)   p_kst 2.566820e-04   p_cons 2.327189e-03   p_joint 1.101382e-04

Joint ci ratio: 2.535498e-01	ci left: 9.574427e-05	ci right 1.239606e-04	k: 238	n:2180000
Cons ci ratio: 5.498364e-02	ci left: 2.262178e-03	ci right 2.390526e-03	k: 5070	n:2180000
KS ci ratio: 1.653339e-01	ci left: 2.364848e-04	ci right 2.795399e-04	k: 561	n:2180000
KIAA1804   2180000 perm   2324 sec   (938 perm/sec)   p_kst 2.573394e-04   p_cons 2.325688e-03   p_joint 1.091743e-04

Joint ci ratio: 2.535498e-01	ci left: 9.530708e-05	ci right 1.233946e-04	k: 238	n:2190000
Cons ci ratio: 5.484858e-02	ci left: 2.263107e-03	ci right 2.391182e-03	k: 5095	n:2190000
KS ci ratio: 1.653340e-01	ci left: 2.354050e-04	ci right 2.782635e-04	k: 561	n:2190000
KIAA1804   2190000 perm   2343 sec   (935 perm/sec)   p_kst 2.561644e-04   p_cons 2.326484e-03   p_joint 1.086758e-04

Joint ci ratio: 2.530211e-01	ci left: 9.529956e-05	ci right 1.233170e-04	k: 239	n:2200000
Cons ci ratio: 5.470916e-02	ci left: 2.264477e-03	ci right 2.392293e-03	k: 5121	n:2200000
KS ci ratio: 1.650406e-01	ci left: 2.352065e-04	ci right 2.779453e-04	k: 563	n:2200000
KIAA1804   2200000 perm   2362 sec   (931 perm/sec)   p_kst 2.559091e-04   p_cons 2.327727e-03   p_joint 1.086364e-04

Joint ci ratio: 2.524956e-01	ci left: 9.529216e-05	ci right 1.232401e-04	k: 240	n:2210000
Cons ci ratio: 5.461335e-02	ci left: 2.262264e-03	ci right 2.389725e-03	k: 5139	n:2210000
KS ci ratio: 1.646034e-01	ci left: 2.354437e-04	ci right 2.781010e-04	k: 566	n:2210000
KIAA1804   2210000 perm   2381 sec   (928 perm/sec)   p_kst 2.561086e-04   p_cons 2.325339e-03   p_joint 1.085973e-04

Joint ci ratio: 2.519734e-01	ci left: 9.528490e-05	ci right 1.231638e-04	k: 241	n:2220000
Cons ci ratio: 5.448099e-02	ci left: 2.263181e-03	ci right 2.390375e-03	k: 5164	n:2220000
KS ci ratio: 1.640258e-01	ci left: 2.361108e-04	ci right 2.787241e-04	k: 570	n:2220000
KIAA1804   2220000 perm   2400 sec   (925 perm/sec)   p_kst 2.567568e-04   p_cons 2.326126e-03   p_joint 1.085586e-04

Joint ci ratio: 2.504258e-01	ci left: 9.611822e-05	ci right 1.240413e-04	k: 244	n:2230000
Cons ci ratio: 5.438111e-02	ci left: 2.261436e-03	ci right 2.388292e-03	k: 5183	n:2230000
KS ci ratio: 1.630293e-01	ci left: 2.380626e-04	ci right 2.807416e-04	k: 577	n:2230000
KIAA1804   2230000 perm   2420 sec   (922 perm/sec)   p_kst 2.587444e-04   p_cons 2.324215e-03   p_joint 1.094170e-04

Joint ci ratio: 2.499163e-01	ci left: 9.610756e-05	ci right 1.239619e-04	k: 245	n:2240000
Cons ci ratio: 5.425044e-02	ci left: 2.262350e-03	ci right 2.388942e-03	k: 5208	n:2240000
KS ci ratio: 1.627480e-01	ci left: 2.378563e-04	ci right 2.804175e-04	k: 579	n:2240000
KIAA1804   2240000 perm   2439 sec   (919 perm/sec)   p_kst 2.584821e-04   p_cons 2.325000e-03   p_joint 1.093750e-04

Joint ci ratio: 2.499164e-01	ci left: 9.568042e-05	ci right 1.234110e-04	k: 245	n:2250000
Cons ci ratio: 5.417779e-02	ci left: 2.258433e-03	ci right 2.384631e-03	k: 5222	n:2250000
KS ci ratio: 1.627481e-01	ci left: 2.367991e-04	ci right 2.791712e-04	k: 579	n:2250000
KIAA1804   2250000 perm   2458 sec   (915 perm/sec)   p_kst 2.573333e-04   p_cons 2.320889e-03   p_joint 1.088889e-04

Joint ci ratio: 2.494099e-01	ci left: 9.567185e-05	ci right 1.233350e-04	k: 246	n:2260000
Cons ci ratio: 5.405373e-02	ci left: 2.258915e-03	ci right 2.384843e-03	k: 5246	n:2260000
KS ci ratio: 1.626081e-01	ci left: 2.361758e-04	ci right 2.783964e-04	k: 580	n:2260000
KIAA1804   2260000 perm   2478 sec   (912 perm/sec)   p_kst 2.566372e-04   p_cons 2.321239e-03   p_joint 1.088496e-04

Joint ci ratio: 2.590278e-01	ci left: 8.782583e-05	ci right 1.143583e-04	k: 228	n:2270000
Cons ci ratio: 5.389467e-02	ci left: 2.262437e-03	ci right 2.388178e-03	k: 5277	n:2270000
KS ci ratio: 1.623289e-01	ci left: 2.359806e-04	ci right 2.780869e-04	k: 582	n:2270000
KIAA1804   2270000 perm   2497 sec   (909 perm/sec)   p_kst 2.563877e-04   p_cons 2.324670e-03   p_joint 1.004405e-04

Joint ci ratio: 2.579039e-01	ci left: 8.826100e-05	ci right 1.147906e-04	k: 230	n:2280000
Cons ci ratio: 5.380306e-02	ci left: 2.260302e-03	ci right 2.385704e-03	k: 5295	n:2280000
KS ci ratio: 1.612263e-01	ci left: 2.383124e-04	ci right 2.805179e-04	k: 590	n:2280000
KIAA1804   2280000 perm   2517 sec   (906 perm/sec)   p_kst 2.587719e-04   p_cons 2.322368e-03   p_joint 1.008772e-04

Joint ci ratio: 2.562453e-01	ci left: 8.910123e-05	ci right 1.156836e-04	k: 233	n:2290000
Cons ci ratio: 5.368661e-02	ci left: 2.260340e-03	ci right 2.385465e-03	k: 5318	n:2290000
KS ci ratio: 1.609542e-01	ci left: 2.381099e-04	ci right 2.802014e-04	k: 592	n:2290000
KIAA1804   2290000 perm   2536 sec   (903 perm/sec)   p_kst 2.585153e-04   p_cons 2.322271e-03   p_joint 1.017467e-04

Joint ci ratio: 2.556995e-01	ci left: 8.912072e-05	ci right 1.156433e-04	k: 234	n:2300000
Cons ci ratio: 5.358600e-02	ci left: 2.259092e-03	ci right 2.383906e-03	k: 5338	n:2300000
KS ci ratio: 1.606835e-01	ci left: 2.379092e-04	ci right 2.798877e-04	k: 594	n:2300000
KIAA1804   2300000 perm   2556 sec   (900 perm/sec)   p_kst 2.582609e-04   p_cons 2.320870e-03   p_joint 1.017391e-04

Joint ci ratio: 2.551572e-01	ci left: 8.914011e-05	ci right 1.156032e-04	k: 235	n:2310000
Cons ci ratio: 5.348095e-02	ci left: 2.258281e-03	ci right 2.382798e-03	k: 5359	n:2310000
KS ci ratio: 1.601461e-01	ci left: 2.385413e-04	ci right 2.804771e-04	k: 598	n:2310000
KIAA1804   2310000 perm   2575 sec   (897 perm/sec)   p_kst 2.588745e-04   p_cons 2.319913e-03   p_joint 1.017316e-04

Joint ci ratio: 2.546183e-01	ci left: 8.915938e-05	ci right 1.155634e-04	k: 236	n:2320000
Cons ci ratio: 5.337652e-02	ci left: 2.257478e-03	ci right 2.381700e-03	k: 5380	n:2320000
KS ci ratio: 1.598794e-01	ci left: 2.383407e-04	ci right 2.801647e-04	k: 600	n:2320000
KIAA1804   2320000 perm   2596 sec   (894 perm/sec)   p_kst 2.586207e-04   p_cons 2.318966e-03   p_joint 1.017241e-04

Joint ci ratio: 2.524963e-01	ci left: 9.038438e-05	ci right 1.168930e-04	k: 240	n:2330000
Cons ci ratio: 5.325787e-02	ci left: 2.257953e-03	ci right 2.381916e-03	k: 5404	n:2330000
KS ci ratio: 1.592184e-01	ci left: 2.393780e-04	ci right 2.811938e-04	k: 605	n:2330000
KIAA1804   2330000 perm   2615 sec   (891 perm/sec)   p_kst 2.596567e-04   p_cons 2.319313e-03   p_joint 1.030043e-04

Joint ci ratio: 2.524963e-01	ci left: 8.999812e-05	ci right 1.163935e-04	k: 240	n:2340000
Cons ci ratio: 5.311061e-02	ci left: 2.260953e-03	ci right 2.384728e-03	k: 5434	n:2340000
KS ci ratio: 1.590872e-01	ci left: 2.387654e-04	ci right 2.804365e-04	k: 606	n:2340000
KIAA1804   2340000 perm   2636 sec   (888 perm/sec)   p_kst 2.589744e-04   p_cons 2.322222e-03   p_joint 1.025641e-04

Joint ci ratio: 2.519741e-01	ci left: 9.001379e-05	ci right 1.163506e-04	k: 241	n:2350000
Cons ci ratio: 5.302781e-02	ci left: 2.258470e-03	ci right 2.381910e-03	k: 5451	n:2350000
KS ci ratio: 1.586955e-01	ci left: 2.389752e-04	ci right 2.805704e-04	k: 609	n:2350000
KIAA1804   2350000 perm   2656 sec   (885 perm/sec)   p_kst 2.591489e-04   p_cons 2.319574e-03   p_joint 1.025532e-04

Joint ci ratio: 2.514551e-01	ci left: 9.002937e-05	ci right 1.163080e-04	k: 242	n:2360000
Cons ci ratio: 5.288727e-02	ci left: 2.261026e-03	ci right 2.384268e-03	k: 5480	n:2360000
KS ci ratio: 1.584360e-01	ci left: 2.387764e-04	ci right 2.802627e-04	k: 611	n:2360000
KIAA1804   2360000 perm   2676 sec   (882 perm/sec)   p_kst 2.588983e-04   p_cons 2.322034e-03   p_joint 1.025424e-04

Joint ci ratio: 2.613209e-01	ci left: 8.254236e-05	ci right 1.077355e-04	k: 224	n:2370000
Cons ci ratio: 5.279108e-02	ci left: 2.259813e-03	ci right 2.382758e-03	k: 5500	n:2370000
KS ci ratio: 1.580491e-01	ci left: 2.389846e-04	ci right 2.803960e-04	k: 614	n:2370000
KIAA1804   2370000 perm   2697 sec   (879 perm/sec)   p_kst 2.590717e-04   p_cons 2.320675e-03   p_joint 9.451477e-05

Joint ci ratio: 2.601671e-01	ci left: 8.298097e-05	ci right 1.081780e-04	k: 226	n:2380000
Cons ci ratio: 5.267629e-02	ci left: 2.260269e-03	ci right 2.382964e-03	k: 5524	n:2380000
KS ci ratio: 1.577928e-01	ci left: 2.387876e-04	ci right 2.800914e-04	k: 616	n:2380000
KIAA1804   2380000 perm   2717 sec   (876 perm/sec)   p_kst 2.588235e-04   p_cons 2.321008e-03   p_joint 9.495798e-05

Joint ci ratio: 2.595959e-01	ci left: 8.302492e-05	ci right 1.081710e-04	k: 227	n:2390000
Cons ci ratio: 5.259550e-02	ci left: 2.257831e-03	ci right 2.380200e-03	k: 5541	n:2390000
KS ci ratio: 1.574105e-01	ci left: 2.389942e-04	ci right 2.802242e-04	k: 619	n:2390000
KIAA1804   2390000 perm   2737 sec   (873 perm/sec)   p_kst 2.589958e-04   p_cons 2.318410e-03   p_joint 9.497908e-05

Joint ci ratio: 2.573481e-01	ci left: 8.423769e-05	ci right 1.094946e-04	k: 231	n:2400000
Cons ci ratio: 5.247725e-02	ci left: 2.258703e-03	ci right 2.380836e-03	k: 5566	n:2400000
KS ci ratio: 1.569052e-01	ci left: 2.395995e-04	ci right 2.807887e-04	k: 623	n:2400000
KIAA1804   2400000 perm   2758 sec   (870 perm/sec)   p_kst 2.595833e-04   p_cons 2.319167e-03   p_joint 9.625000e-05

Joint ci ratio: 2.567953e-01	ci left: 8.427636e-05	ci right 1.094819e-04	k: 232	n:2410000
Cons ci ratio: 5.234104e-02	ci left: 2.261207e-03	ci right 2.383148e-03	k: 5595	n:2410000
KS ci ratio: 1.566543e-01	ci left: 2.394027e-04	ci right 2.804860e-04	k: 625	n:2410000
KIAA1804   2410000 perm   2779 sec   (867 perm/sec)   p_kst 2.593361e-04   p_cons 2.321577e-03   p_joint 9.626556e-05

Joint ci ratio: 2.562460e-01	ci left: 8.431477e-05	ci right 1.094692e-04	k: 233	n:2420000
Cons ci ratio: 5.222915e-02	ci left: 2.261651e-03	ci right 2.383347e-03	k: 5619	n:2420000
KS ci ratio: 1.562803e-01	ci left: 2.396045e-04	ci right 2.806152e-04	k: 628	n:2420000
KIAA1804   2420000 perm   2800 sec   (864 perm/sec)   p_kst 2.595041e-04   p_cons 2.321901e-03   p_joint 9.628099e-05

Joint ci ratio: 2.562460e-01	ci left: 8.396779e-05	ci right 1.090188e-04	k: 233	n:2430000
Cons ci ratio: 5.214576e-02	ci left: 2.259654e-03	ci right 2.381043e-03	k: 5637	n:2430000
KS ci ratio: 1.559089e-01	ci left: 2.398049e-04	ci right 2.807431e-04	k: 631	n:2430000
KIAA1804   2430000 perm   2821 sec   (861 perm/sec)   p_kst 2.596708e-04   p_cons 2.319753e-03   p_joint 9.588477e-05

Joint ci ratio: 2.557002e-01	ci left: 8.400721e-05	ci right 1.090080e-04	k: 234	n:2440000
Cons ci ratio: 5.207662e-02	ci left: 2.256461e-03	ci right 2.377512e-03	k: 5652	n:2440000
KS ci ratio: 1.555402e-01	ci left: 2.400037e-04	ci right 2.808699e-04	k: 634	n:2440000
KIAA1804   2440000 perm   2841 sec   (859 perm/sec)   p_kst 2.598361e-04   p_cons 2.316393e-03   p_joint 9.590164e-05

Joint ci ratio: 2.551579e-01	ci left: 8.404636e-05	ci right 1.089973e-04	k: 235	n:2450000
Cons ci ratio: 5.196642e-02	ci left: 2.256919e-03	ci right 2.377731e-03	k: 5676	n:2450000
KS ci ratio: 1.554179e-01	ci left: 2.394163e-04	ci right 2.801475e-04	k: 635	n:2450000
KIAA1804   2450000 perm   2862 sec   (856 perm/sec)   p_kst 2.591837e-04   p_cons 2.316735e-03   p_joint 9.591837e-05

Joint ci ratio: 2.551580e-01	ci left: 8.370470e-05	ci right 1.085543e-04	k: 235	n:2460000
Cons ci ratio: 5.190713e-02	ci left: 2.252960e-03	ci right 2.373419e-03	k: 5689	n:2460000
KS ci ratio: 1.550526e-01	ci left: 2.396152e-04	ci right 2.802756e-04	k: 638	n:2460000
KIAA1804   2460000 perm   2883 sec   (853 perm/sec)   p_kst 2.593496e-04   p_cons 2.312602e-03   p_joint 9.552846e-05

Joint ci ratio: 2.540836e-01	ci left: 8.412387e-05	ci right 1.089760e-04	k: 237	n:2470000
Cons ci ratio: 5.176622e-02	ci left: 2.256227e-03	ci right 2.376523e-03	k: 5720	n:2470000
KS ci ratio: 1.544495e-01	ci left: 2.405910e-04	ci right 2.812434e-04	k: 643	n:2470000
KIAA1804   2470000 perm   2903 sec   (851 perm/sec)   p_kst 2.603239e-04   p_cons 2.315789e-03   p_joint 9.595142e-05

Joint ci ratio: 2.535515e-01	ci left: 8.416223e-05	ci right 1.089654e-04	k: 238	n:2480000
Cons ci ratio: 5.166699e-02	ci left: 2.255886e-03	ci right 2.375926e-03	k: 5742	n:2480000
KS ci ratio: 1.540910e-01	ci left: 2.407839e-04	ci right 2.813657e-04	k: 646	n:2480000
KIAA1804   2480000 perm   2924 sec   (848 perm/sec)   p_kst 2.604839e-04   p_cons 2.315323e-03   p_joint 9.596774e-05

Joint ci ratio: 2.530227e-01	ci left: 8.420035e-05	ci right 1.089549e-04	k: 239	n:2490000
Cons ci ratio: 5.159075e-02	ci left: 2.253565e-03	ci right 2.373300e-03	k: 5759	n:2490000
KS ci ratio: 1.539721e-01	ci left: 2.402030e-04	ci right 2.806528e-04	k: 647	n:2490000
KIAA1804   2490000 perm   2945 sec   (845 perm/sec)   p_kst 2.598394e-04   p_cons 2.312851e-03   p_joint 9.598394e-05

Joint ci ratio: 2.530227e-01	ci left: 8.386354e-05	ci right 1.085191e-04	k: 239	n:2500000
Cons ci ratio: 5.148359e-02	ci left: 2.254027e-03	ci right 2.373530e-03	k: 5783	n:2500000
KS ci ratio: 1.534990e-01	ci left: 2.407807e-04	ci right 2.811917e-04	k: 651	n:2500000
KIAA1804   2500000 perm   2966 sec   (843 perm/sec)   p_kst 2.604000e-04   p_cons 2.313200e-03   p_joint 9.560000e-05

Joint ci ratio: 2.524972e-01	ci left: 8.390260e-05	ci right 1.085103e-04	k: 240	n:2510000
Cons ci ratio: 5.137710e-02	ci left: 2.254486e-03	ci right 2.373759e-03	k: 5807	n:2510000
KS ci ratio: 1.532641e-01	ci left: 2.405876e-04	ci right 2.808988e-04	k: 653	n:2510000
KIAA1804   2510000 perm   2988 sec   (840 perm/sec)   p_kst 2.601594e-04   p_cons 2.313546e-03   p_joint 9.561753e-05

Joint ci ratio: 2.514559e-01	ci left: 8.431319e-05	ci right 1.089234e-04	k: 242	n:2520000
Cons ci ratio: 5.129773e-02	ci left: 2.252590e-03	ci right 2.371574e-03	k: 5825	n:2520000
KS ci ratio: 1.527975e-01	ci left: 2.411594e-04	ci right 2.814322e-04	k: 657	n:2520000
KIAA1804   2520000 perm   3009 sec   (837 perm/sec)   p_kst 2.607143e-04   p_cons 2.311508e-03   p_joint 9.603175e-05

Joint ci ratio: 2.514560e-01	ci left: 8.397993e-05	ci right 1.084928e-04	k: 242	n:2530000
Cons ci ratio: 5.120555e-02	ci left: 2.251881e-03	ci right 2.370607e-03	k: 5846	n:2530000
KS ci ratio: 1.524504e-01	ci left: 2.413467e-04	ci right 2.815508e-04	k: 660	n:2530000
KIAA1804   2530000 perm   3031 sec   (835 perm/sec)   p_kst 2.608696e-04   p_cons 2.310672e-03   p_joint 9.565217e-05

Joint ci ratio: 2.514560e-01	ci left: 8.364930e-05	ci right 1.080657e-04	k: 242	n:2540000
Cons ci ratio: 5.109205e-02	ci left: 2.253121e-03	ci right 2.371641e-03	k: 5872	n:2540000
KS ci ratio: 1.523352e-01	ci left: 2.407752e-04	ci right 2.808510e-04	k: 661	n:2540000
KIAA1804   2540000 perm   3053 sec   (832 perm/sec)   p_kst 2.602362e-04   p_cons 2.311811e-03   p_joint 9.527559e-05

Joint ci ratio: 2.509402e-01	ci left: 8.368874e-05	ci right 1.080587e-04	k: 243	n:2550000
Cons ci ratio: 5.098796e-02	ci left: 2.253577e-03	ci right 2.371872e-03	k: 5896	n:2550000
KS ci ratio: 1.521057e-01	ci left: 2.405854e-04	ci right 2.805638e-04	k: 663	n:2550000
KIAA1804   2550000 perm   3074 sec   (830 perm/sec)   p_kst 2.600000e-04   p_cons 2.312157e-03   p_joint 9.529412e-05

Joint ci ratio: 2.494115e-01	ci left: 8.446024e-05	ci right 1.088818e-04	k: 246	n:2560000
Cons ci ratio: 5.086299e-02	ci left: 2.255957e-03	ci right 2.374079e-03	k: 5925	n:2560000
KS ci ratio: 1.517632e-01	ci left: 2.407730e-04	ci right 2.806843e-04	k: 666	n:2560000
KIAA1804   2560000 perm   3095 sec   (827 perm/sec)   p_kst 2.601563e-04   p_cons 2.314453e-03   p_joint 9.609375e-05

Joint ci ratio: 2.494116e-01	ci left: 8.413160e-05	ci right 1.084581e-04	k: 246	n:2570000
Cons ci ratio: 5.078169e-02	ci left: 2.254478e-03	ci right 2.372328e-03	k: 5944	n:2570000
KS ci ratio: 1.515362e-01	ci left: 2.405848e-04	ci right 2.803998e-04	k: 668	n:2570000
KIAA1804   2570000 perm   3117 sec   (825 perm/sec)   p_kst 2.599222e-04   p_cons 2.312840e-03   p_joint 9.571984e-05

Joint ci ratio: 2.489082e-01	ci left: 8.416890e-05	ci right 1.084495e-04	k: 247	n:2580000
Cons ci ratio: 5.066673e-02	ci left: 2.256073e-03	ci right 2.373731e-03	k: 5971	n:2580000
KS ci ratio: 1.508611e-01	ci left: 2.418899e-04	ci right 2.817265e-04	k: 674	n:2580000
KIAA1804   2580000 perm   3139 sec   (822 perm/sec)   p_kst 2.612403e-04   p_cons 2.314341e-03   p_joint 9.573643e-05

Joint ci ratio: 2.484079e-01	ci left: 8.420597e-05	ci right 1.084409e-04	k: 248	n:2590000
Cons ci ratio: 5.055254e-02	ci left: 2.257655e-03	ci right 2.375123e-03	k: 5998	n:2590000
KS ci ratio: 1.507495e-01	ci left: 2.413275e-04	ci right 2.810394e-04	k: 675	n:2590000
KIAA1804   2590000 perm   3162 sec   (819 perm/sec)   p_kst 2.606178e-04   p_cons 2.315830e-03   p_joint 9.575290e-05

Joint ci ratio: 2.474162e-01	ci left: 8.460355e-05	ci right 1.088407e-04	k: 250	n:2600000
Cons ci ratio: 5.046852e-02	ci left: 2.256567e-03	ci right 2.373777e-03	k: 6018	n:2600000
KS ci ratio: 1.501950e-01	ci left: 2.422500e-04	ci right 2.819539e-04	k: 680	n:2600000
KIAA1804   2600000 perm   3184 sec   (817 perm/sec)   p_kst 2.615385e-04   p_cons 2.314615e-03   p_joint 9.615385e-05

Joint ci ratio: 2.469248e-01	ci left: 8.463881e-05	ci right 1.088305e-04	k: 251	n:2610000
Cons ci ratio: 5.037655e-02	ci left: 2.256244e-03	ci right 2.373218e-03	k: 6040	n:2610000
KS ci ratio: 1.498653e-01	ci left: 2.424281e-04	ci right 2.820662e-04	k: 683	n:2610000
KIAA1804   2610000 perm   3206 sec   (814 perm/sec)   p_kst 2.616858e-04   p_cons 2.314176e-03   p_joint 9.616858e-05

Joint ci ratio: 2.459507e-01	ci left: 8.503198e-05	ci right 1.092256e-04	k: 253	n:2620000
Cons ci ratio: 5.026846e-02	ci left: 2.257431e-03	ci right 2.374208e-03	k: 6066	n:2620000
KS ci ratio: 1.496467e-01	ci left: 2.422376e-04	ci right 2.817815e-04	k: 685	n:2620000
KIAA1804   2620000 perm   3228 sec   (812 perm/sec)   p_kst 2.614504e-04   p_cons 2.315267e-03   p_joint 9.656489e-05

Joint ci ratio: 2.459508e-01	ci left: 8.470866e-05	ci right 1.088103e-04	k: 253	n:2630000
Cons ci ratio: 5.018997e-02	ci left: 2.255981e-03	ci right 2.372496e-03	k: 6085	n:2630000
KS ci ratio: 1.493205e-01	ci left: 2.424145e-04	ci right 2.818934e-04	k: 688	n:2630000
KIAA1804   2630000 perm   3250 sec   (809 perm/sec)   p_kst 2.615970e-04   p_cons 2.313688e-03   p_joint 9.619772e-05

Joint ci ratio: 2.459508e-01	ci left: 8.438780e-05	ci right 1.083981e-04	k: 253	n:2640000
Cons ci ratio: 5.012419e-02	ci left: 2.253420e-03	ci right 2.369646e-03	k: 6101	n:2640000
KS ci ratio: 1.488889e-01	ci left: 2.429549e-04	ci right 2.823973e-04	k: 692	n:2640000
KIAA1804   2640000 perm   3273 sec   (807 perm/sec)   p_kst 2.621212e-04   p_cons 2.310985e-03   p_joint 9.583333e-05

Joint ci ratio: 2.454681e-01	ci left: 8.442348e-05	ci right 1.083896e-04	k: 254	n:2650000
Cons ci ratio: 5.005867e-02	ci left: 2.250879e-03	ci right 2.366817e-03	k: 6117	n:2650000
KS ci ratio: 1.483546e-01	ci left: 2.438548e-04	ci right 2.832885e-04	k: 697	n:2650000
KIAA1804   2650000 perm   3295 sec   (804 perm/sec)   p_kst 2.630189e-04   p_cons 2.308302e-03   p_joint 9.584906e-05

Joint ci ratio: 2.440367e-01	ci left: 8.516475e-05	ci right 1.091790e-04	k: 257	n:2660000
Cons ci ratio: 4.995669e-02	ci left: 2.251698e-03	ci right 2.367435e-03	k: 6142	n:2660000
KS ci ratio: 1.479313e-01	ci left: 2.443860e-04	ci right 2.837830e-04	k: 701	n:2660000
KIAA1804   2660000 perm   3317 sec   (802 perm/sec)   p_kst 2.635338e-04   p_cons 2.309023e-03   p_joint 9.661654e-05

Joint ci ratio: 2.440367e-01	ci left: 8.484578e-05	ci right 1.087701e-04	k: 257	n:2670000
Cons ci ratio: 4.988777e-02	ci left: 2.249552e-03	ci right 2.365015e-03	k: 6159	n:2670000
KS ci ratio: 1.477211e-01	ci left: 2.441921e-04	ci right 2.834969e-04	k: 703	n:2670000
KIAA1804   2670000 perm   3339 sec   (800 perm/sec)   p_kst 2.632959e-04   p_cons 2.306742e-03   p_joint 9.625468e-05

Joint ci ratio: 2.430962e-01	ci left: 8.522992e-05	ci right 1.091559e-04	k: 259	n:2680000
Cons ci ratio: 4.976666e-02	ci left: 2.252213e-03	ci right 2.367524e-03	k: 6189	n:2680000
KS ci ratio: 1.473031e-01	ci left: 2.447184e-04	ci right 2.839866e-04	k: 707	n:2680000
KIAA1804   2680000 perm   3362 sec   (797 perm/sec)   p_kst 2.638060e-04   p_cons 2.309328e-03   p_joint 9.664179e-05

Joint ci ratio: 2.417057e-01	ci left: 8.596059e-05	ci right 1.099330e-04	k: 262	n:2690000
Cons ci ratio: 4.967446e-02	ci left: 2.252284e-03	ci right 2.367379e-03	k: 6212	n:2690000
KS ci ratio: 1.469920e-01	ci left: 2.448828e-04	ci right 2.840872e-04	k: 710	n:2690000
KIAA1804   2690000 perm   3384 sec   (795 perm/sec)   p_kst 2.639405e-04   p_cons 2.309294e-03   p_joint 9.739777e-05

Joint ci ratio: 2.417057e-01	ci left: 8.564222e-05	ci right 1.095258e-04	k: 262	n:2700000
Cons ci ratio: 4.959075e-02	ci left: 2.251624e-03	ci right 2.366485e-03	k: 6233	n:2700000
KS ci ratio: 1.468888e-01	ci left: 2.443326e-04	ci right 2.834190e-04	k: 711	n:2700000
KIAA1804   2700000 perm   3407 sec   (792 perm/sec)   p_kst 2.633333e-04   p_cons 2.308519e-03   p_joint 9.703704e-05

Joint ci ratio: 2.403388e-01	ci left: 8.636636e-05	ci right 1.102954e-04	k: 265	n:2710000
Cons ci ratio: 4.950348e-02	ci left: 2.251332e-03	ci right 2.365971e-03	k: 6255	n:2710000
KS ci ratio: 1.464779e-01	ci left: 2.448529e-04	ci right 2.839033e-04	k: 715	n:2710000
KIAA1804   2710000 perm   3430 sec   (790 perm/sec)   p_kst 2.638376e-04   p_cons 2.308118e-03   p_joint 9.778598e-05

Joint ci ratio: 2.398883e-01	ci left: 8.639437e-05	ci right 1.102796e-04	k: 266	n:2720000
Cons ci ratio: 4.943642e-02	ci left: 2.249228e-03	ci right 2.363600e-03	k: 6272	n:2720000
KS ci ratio: 1.461720e-01	ci left: 2.450152e-04	ci right 2.840028e-04	k: 718	n:2720000
KIAA1804   2720000 perm   3453 sec   (788 perm/sec)   p_kst 2.639706e-04   p_cons 2.305882e-03   p_joint 9.779412e-05

Joint ci ratio: 2.389948e-01	ci left: 8.676656e-05	ci right 1.106521e-04	k: 268	n:2730000
Cons ci ratio: 4.933818e-02	ci left: 2.250034e-03	ci right 2.364213e-03	k: 6297	n:2730000
KS ci ratio: 1.458680e-01	ci left: 2.451765e-04	ci right 2.841016e-04	k: 721	n:2730000
KIAA1804   2730000 perm   3476 sec   (785 perm/sec)   p_kst 2.641026e-04   p_cons 2.306593e-03   p_joint 9.816850e-05

Joint ci ratio: 2.385518e-01	ci left: 8.679302e-05	ci right 1.106351e-04	k: 269	n:2740000
Cons ci ratio: 4.921713e-02	ci left: 2.252996e-03	ci right 2.367038e-03	k: 6328	n:2740000
KS ci ratio: 1.456664e-01	ci left: 2.449850e-04	ci right 2.838212e-04	k: 723	n:2740000
KIAA1804   2740000 perm   3499 sec   (783 perm/sec)   p_kst 2.638686e-04   p_cons 2.309489e-03   p_joint 9.817518e-05

Joint ci ratio: 2.385518e-01	ci left: 8.647741e-05	ci right 1.102327e-04	k: 269	n:2750000
Cons ci ratio: 4.912407e-02	ci left: 2.253424e-03	ci right 2.367265e-03	k: 6352	n:2750000
KS ci ratio: 1.454656e-01	ci left: 2.447949e-04	ci right 2.835429e-04	k: 725	n:2750000
KIAA1804   2750000 perm   3523 sec   (781 perm/sec)   p_kst 2.636364e-04   p_cons 2.309818e-03   p_joint 9.781818e-05

Joint ci ratio: 2.376732e-01	ci left: 8.684550e-05	ci right 1.106011e-04	k: 271	n:2760000
Cons ci ratio: 4.899689e-02	ci left: 2.257069e-03	ci right 2.370791e-03	k: 6385	n:2760000
KS ci ratio: 1.449672e-01	ci left: 2.456538e-04	ci right 2.843929e-04	k: 730	n:2760000
KIAA1804   2760000 perm   3546 sec   (778 perm/sec)   p_kst 2.644928e-04   p_cons 2.313406e-03   p_joint 9.818841e-05

Joint ci ratio: 2.376732e-01	ci left: 8.653198e-05	ci right 1.102019e-04	k: 271	n:2770000
Cons ci ratio: 4.892420e-02	ci left: 2.255696e-03	ci right 2.369175e-03	k: 6404	n:2770000
KS ci ratio: 1.448682e-01	ci left: 2.451148e-04	ci right 2.837403e-04	k: 731	n:2770000
KIAA1804   2770000 perm   3569 sec   (776 perm/sec)   p_kst 2.638989e-04   p_cons 2.311913e-03   p_joint 9.783394e-05

Joint ci ratio: 2.372375e-01	ci left: 8.655902e-05	ci right 1.101865e-04	k: 272	n:2780000
Cons ci ratio: 4.881757e-02	ci left: 2.257531e-03	ci right 2.370848e-03	k: 6432	n:2780000
KS ci ratio: 1.444740e-01	ci left: 2.456199e-04	ci right 2.842106e-04	k: 735	n:2780000
KIAA1804   2780000 perm   3593 sec   (774 perm/sec)   p_kst 2.643885e-04   p_cons 2.313669e-03   p_joint 9.784173e-05

Joint ci ratio: 2.372375e-01	ci left: 8.624877e-05	ci right 1.097916e-04	k: 272	n:2790000
Cons ci ratio: 4.869275e-02	ci left: 2.261123e-03	ci right 2.374322e-03	k: 6465	n:2790000
KS ci ratio: 1.442781e-01	ci left: 2.454305e-04	ci right 2.839346e-04	k: 737	n:2790000
KIAA1804   2790000 perm   3616 sec   (772 perm/sec)   p_kst 2.641577e-04   p_cons 2.317204e-03   p_joint 9.749104e-05

Joint ci ratio: 2.368042e-01	ci left: 8.627668e-05	ci right 1.097778e-04	k: 273	n:2800000
Cons ci ratio: 4.860638e-02	ci left: 2.261162e-03	ci right 2.374157e-03	k: 6488	n:2800000
KS ci ratio: 1.438886e-01	ci left: 2.459310e-04	ci right 2.844006e-04	k: 741	n:2800000
KIAA1804   2800000 perm   3640 sec   (769 perm/sec)   p_kst 2.646429e-04   p_cons 2.317143e-03   p_joint 9.750000e-05

Joint ci ratio: 2.368043e-01	ci left: 8.596964e-05	ci right 1.093871e-04	k: 273	n:2810000
Cons ci ratio: 4.847572e-02	ci left: 2.265420e-03	ci right 2.378314e-03	k: 6523	n:2810000
KS ci ratio: 1.435023e-01	ci left: 2.464282e-04	ci right 2.848631e-04	k: 745	n:2810000
KIAA1804   2810000 perm   3664 sec   (767 perm/sec)   p_kst 2.651246e-04   p_cons 2.321352e-03   p_joint 9.715302e-05

Joint ci ratio: 2.368043e-01	ci left: 8.566478e-05	ci right 1.089992e-04	k: 273	n:2820000
Cons ci ratio: 4.839420e-02	ci left: 2.265093e-03	ci right 2.377776e-03	k: 6545	n:2820000
KS ci ratio: 1.432146e-01	ci left: 2.465800e-04	ci right 2.849549e-04	k: 748	n:2820000
KIAA1804   2820000 perm   3688 sec   (765 perm/sec)   p_kst 2.652482e-04   p_cons 2.320922e-03   p_joint 9.680851e-05

Joint ci ratio: 2.363734e-01	ci left: 8.569449e-05	ci right 1.089883e-04	k: 274	n:2830000
Cons ci ratio: 4.826892e-02	ci left: 2.268959e-03	ci right 2.381534e-03	k: 6579	n:2830000
KS ci ratio: 1.429287e-01	ci left: 2.467308e-04	ci right 2.850460e-04	k: 751	n:2830000
KIAA1804   2830000 perm   3711 sec   (763 perm/sec)   p_kst 2.653710e-04   p_cons 2.324735e-03   p_joint 9.681979e-05

Joint ci ratio: 2.398888e-01	ci left: 8.274388e-05	ci right 1.056200e-04	k: 266	n:2840000
Cons ci ratio: 4.820674e-02	ci left: 2.266883e-03	ci right 2.379206e-03	k: 6596	n:2840000
KS ci ratio: 1.424558e-01	ci left: 2.475597e-04	ci right 2.858657e-04	k: 756	n:2840000
KIAA1804   2840000 perm   3735 sec   (760 perm/sec)   p_kst 2.661972e-04   p_cons 2.322535e-03   p_joint 9.366197e-05

Joint ci ratio: 2.385523e-01	ci left: 8.344310e-05	ci right 1.063650e-04	k: 269	n:2850000
Cons ci ratio: 4.811564e-02	ci left: 2.267595e-03	ci right 2.379736e-03	k: 6621	n:2850000
KS ci ratio: 1.419876e-01	ci left: 2.483831e-04	ci right 2.866794e-04	k: 761	n:2850000
KIAA1804   2850000 perm   3759 sec   (758 perm/sec)   p_kst 2.670175e-04   p_cons 2.323158e-03   p_joint 9.438596e-05

Joint ci ratio: 2.381117e-01	ci left: 8.348011e-05	ci right 1.063635e-04	k: 270	n:2860000
Cons ci ratio: 4.804680e-02	ci left: 2.266230e-03	ci right 2.378138e-03	k: 6640	n:2860000
KS ci ratio: 1.417089e-01	ci left: 2.485263e-04	ci right 2.867632e-04	k: 764	n:2860000
KIAA1804   2860000 perm   3783 sec   (756 perm/sec)   p_kst 2.671329e-04   p_cons 2.321678e-03   p_joint 9.440559e-05

Joint ci ratio: 2.376736e-01	ci left: 8.351691e-05	ci right 1.063621e-04	k: 271	n:2870000
Cons ci ratio: 4.794219e-02	ci left: 2.268317e-03	ci right 2.380078e-03	k: 6669	n:2870000
KS ci ratio: 1.415241e-01	ci left: 2.483326e-04	ci right 2.864856e-04	k: 766	n:2870000
KIAA1804   2870000 perm   3807 sec   (754 perm/sec)   p_kst 2.668990e-04   p_cons 2.323693e-03   p_joint 9.442509e-05

Joint ci ratio: 2.368046e-01	ci left: 8.388009e-05	ci right 1.067284e-04	k: 273	n:2880000
Cons ci ratio: 4.784541e-02	ci left: 2.269704e-03	ci right 2.381301e-03	k: 6696	n:2880000
KS ci ratio: 1.414319e-01	ci left: 2.478052e-04	ci right 2.858503e-04	k: 767	n:2880000
KIAA1804   2880000 perm   3832 sec   (752 perm/sec)   p_kst 2.663194e-04   p_cons 2.325000e-03   p_joint 9.479167e-05

Joint ci ratio: 2.359450e-01	ci left: 8.424091e-05	ci right 1.070921e-04	k: 275	n:2890000
Cons ci ratio: 4.775278e-02	ci left: 2.270739e-03	ci right 2.382165e-03	k: 6722	n:2890000
KS ci ratio: 1.408826e-01	ci left: 2.489506e-04	ci right 2.870106e-04	k: 773	n:2890000
KIAA1804   2890000 perm   3856 sec   (749 perm/sec)   p_kst 2.674740e-04   p_cons 2.325952e-03   p_joint 9.515571e-05

Joint ci ratio: 2.359450e-01	ci left: 8.395042e-05	ci right 1.067228e-04	k: 275	n:2900000
Cons ci ratio: 4.767131e-02	ci left: 2.270746e-03	ci right 2.381976e-03	k: 6745	n:2900000
KS ci ratio: 1.407009e-01	ci left: 2.487575e-04	ci right 2.867349e-04	k: 775	n:2900000
KIAA1804   2900000 perm   3880 sec   (747 perm/sec)   p_kst 2.672414e-04   p_cons 2.325862e-03   p_joint 9.482759e-05

Joint ci ratio: 2.355187e-01	ci left: 8.398528e-05	ci right 1.067199e-04	k: 276	n:2910000
Cons ci ratio: 4.759378e-02	ci left: 2.270412e-03	ci right 2.381441e-03	k: 6767	n:2910000
KS ci ratio: 1.406104e-01	ci left: 2.482342e-04	ci right 2.861052e-04	k: 776	n:2910000
KIAA1804   2910000 perm   3905 sec   (745 perm/sec)   p_kst 2.666667e-04   p_cons 2.325430e-03   p_joint 9.484536e-05

Joint ci ratio: 2.355188e-01	ci left: 8.369766e-05	ci right 1.063545e-04	k: 276	n:2920000
Cons ci ratio: 4.751662e-02	ci left: 2.270082e-03	ci right 2.380909e-03	k: 6789	n:2920000
KS ci ratio: 1.402498e-01	ci left: 2.487058e-04	ci right 2.865434e-04	k: 780	n:2920000
KIAA1804   2920000 perm   3929 sec   (743 perm/sec)   p_kst 2.671233e-04   p_cons 2.325000e-03   p_joint 9.452055e-05

Joint ci ratio: 2.346730e-01	ci left: 8.405439e-05	ci right 1.067142e-04	k: 278	n:2930000
Cons ci ratio: 4.744333e-02	ci left: 2.269416e-03	ci right 2.380035e-03	k: 6810	n:2930000
KS ci ratio: 1.399812e-01	ci left: 2.488450e-04	ci right 2.866252e-04	k: 783	n:2930000
KIAA1804   2930000 perm   3953 sec   (741 perm/sec)   p_kst 2.672355e-04   p_cons 2.324232e-03   p_joint 9.488055e-05

Joint ci ratio: 2.338364e-01	ci left: 8.440885e-05	ci right 1.070714e-04	k: 280	n:2940000
Cons ci ratio: 4.737733e-02	ci left: 2.268083e-03	ci right 2.378479e-03	k: 6829	n:2940000
KS ci ratio: 1.398031e-01	ci left: 2.486550e-04	ci right 2.863543e-04	k: 785	n:2940000
KIAA1804   2940000 perm   3978 sec   (739 perm/sec)   p_kst 2.670068e-04   p_cons 2.322789e-03   p_joint 9.523810e-05

Joint ci ratio: 2.325980e-01	ci left: 8.508025e-05	ci right 1.077847e-04	k: 283	n:2950000
Cons ci ratio: 4.728393e-02	ci left: 2.269439e-03	ci right 2.379677e-03	k: 6856	n:2950000
KS ci ratio: 1.397142e-01	ci left: 2.481393e-04	ci right 2.857345e-04	k: 786	n:2950000
KIAA1804   2950000 perm   4004 sec   (737 perm/sec)   p_kst 2.664407e-04   p_cons 2.324068e-03   p_joint 9.593220e-05

Joint ci ratio: 2.317832e-01	ci left: 8.542920e-05	ci right 1.081354e-04	k: 285	n:2960000
Cons ci ratio: 4.721859e-02	ci left: 2.268115e-03	ci right 2.378133e-03	k: 6875	n:2960000
KS ci ratio: 1.394487e-01	ci left: 2.482791e-04	ci right 2.858180e-04	k: 789	n:2960000
KIAA1804   2960000 perm   4028 sec   (735 perm/sec)   p_kst 2.665541e-04   p_cons 2.322635e-03   p_joint 9.628378e-05

Joint ci ratio: 2.317833e-01	ci left: 8.514155e-05	ci right 1.077713e-04	k: 285	n:2970000
Cons ci ratio: 4.709537e-02	ci left: 2.272456e-03	ci right 2.382390e-03	k: 6911	n:2970000
KS ci ratio: 1.393606e-01	ci left: 2.477681e-04	ci right 2.852041e-04	k: 790	n:2970000
KIAA1804   2970000 perm   4053 sec   (733 perm/sec)   p_kst 2.659933e-04   p_cons 2.326936e-03   p_joint 9.595960e-05

Joint ci ratio: 2.313791e-01	ci left: 8.517195e-05	ci right 1.077647e-04	k: 286	n:2980000
Cons ci ratio: 4.703080e-02	ci left: 2.271132e-03	ci right 2.380846e-03	k: 6930	n:2980000
KS ci ratio: 1.390970e-01	ci left: 2.479083e-04	ci right 2.852888e-04	k: 793	n:2980000
KIAA1804   2980000 perm   4078 sec   (731 perm/sec)   p_kst 2.661074e-04   p_cons 2.325503e-03   p_joint 9.597315e-05

Joint ci ratio: 2.305771e-01	ci left: 8.551729e-05	ci right 1.081118e-04	k: 288	n:2990000
Cons ci ratio: 4.693944e-02	ci left: 2.272460e-03	ci right 2.382019e-03	k: 6957	n:2990000
KS ci ratio: 1.389222e-01	ci left: 2.477248e-04	ci right 2.850268e-04	k: 795	n:2990000
KIAA1804   2990000 perm   4102 sec   (729 perm/sec)   p_kst 2.658863e-04   p_cons 2.326756e-03   p_joint 9.632107e-05

Joint ci ratio: 2.309771e-01	ci left: 8.491816e-05	ci right 1.073989e-04	k: 287	n:3000000
Cons ci ratio: 4.685532e-02	ci left: 2.273121e-03	ci right 2.382510e-03	k: 6982	n:3000000
KS ci ratio: 1.386611e-01	ci left: 2.478643e-04	ci right 2.851114e-04	k: 798	n:3000000
KIAA1804   3000000 perm   4127 sec   (727 perm/sec)   p_kst 2.660000e-04   p_cons 2.327333e-03   p_joint 9.566667e-05

Joint ci ratio: 2.313792e-01	ci left: 8.432305e-05	ci right 1.066906e-04	k: 286	n:3010000
Cons ci ratio: 4.680179e-02	ci left: 2.270822e-03	ci right 2.379973e-03	k: 6998	n:3010000
KS ci ratio: 1.383153e-01	ci left: 2.483237e-04	ci right 2.855391e-04	k: 802	n:3010000
KIAA1804   3010000 perm   4153 sec   (725 perm/sec)   p_kst 2.664452e-04   p_cons 2.324917e-03   p_joint 9.501661e-05

Joint ci ratio: 2.301792e-01	ci left: 8.497979e-05	ci right 1.073881e-04	k: 289	n:3020000
Cons ci ratio: 4.669177e-02	ci left: 2.274102e-03	ci right 2.383147e-03	k: 7031	n:3020000
KS ci ratio: 1.379721e-01	ci left: 2.487802e-04	ci right 2.859639e-04	k: 806	n:3020000
KIAA1804   3020000 perm   4179 sec   (723 perm/sec)   p_kst 2.668874e-04   p_cons 2.328146e-03   p_joint 9.569536e-05

Joint ci ratio: 2.301793e-01	ci left: 8.469933e-05	ci right 1.070336e-04	k: 289	n:3030000
Cons ci ratio: 4.660898e-02	ci left: 2.274752e-03	ci right 2.383629e-03	k: 7056	n:3030000
KS ci ratio: 1.378014e-01	ci left: 2.485964e-04	ci right 2.857029e-04	k: 808	n:3030000
KIAA1804   3030000 perm   4204 sec   (721 perm/sec)   p_kst 2.666667e-04   p_cons 2.328713e-03   p_joint 9.537954e-05

Joint ci ratio: 2.297834e-01	ci left: 8.473071e-05	ci right 1.070294e-04	k: 290	n:3040000
Cons ci ratio: 4.652334e-02	ci left: 2.275722e-03	ci right 2.384440e-03	k: 7082	n:3040000
KS ci ratio: 1.375466e-01	ci left: 2.487315e-04	ci right 2.857839e-04	k: 811	n:3040000
KIAA1804   3040000 perm   4229 sec   (719 perm/sec)   p_kst 2.667763e-04   p_cons 2.329605e-03   p_joint 9.539474e-05

Joint ci ratio: 2.293896e-01	ci left: 8.476192e-05	ci right 1.070252e-04	k: 291	n:3050000
Cons ci ratio: 4.645454e-02	ci left: 2.275066e-03	ci right 2.383587e-03	k: 7103	n:3050000
KS ci ratio: 1.372932e-01	ci left: 2.488658e-04	ci right 2.858643e-04	k: 814	n:3050000
KIAA1804   3050000 perm   4255 sec   (717 perm/sec)   p_kst 2.668852e-04   p_cons 2.328852e-03   p_joint 9.540984e-05

Joint ci ratio: 2.282202e-01	ci left: 8.540912e-05	ci right 1.077119e-04	k: 294	n:3060000
Cons ci ratio: 4.636974e-02	ci left: 2.276029e-03	ci right 2.384393e-03	k: 7129	n:3060000
KS ci ratio: 1.369575e-01	ci left: 2.493149e-04	ci right 2.862821e-04	k: 818	n:3060000
KIAA1804   3060000 perm   4280 sec   (715 perm/sec)   p_kst 2.673203e-04   p_cons 2.329739e-03   p_joint 9.607843e-05

Joint ci ratio: 2.278344e-01	ci left: 8.543804e-05	ci right 1.077054e-04	k: 295	n:3070000
Cons ci ratio: 4.631786e-02	ci left: 2.273767e-03	ci right 2.381899e-03	k: 7145	n:3070000
KS ci ratio: 1.363759e-01	ci left: 2.507049e-04	ci right 2.877077e-04	k: 825	n:3070000
KIAA1804   3070000 perm   4306 sec   (713 perm/sec)   p_kst 2.687296e-04   p_cons 2.327362e-03   p_joint 9.609121e-05

Joint ci ratio: 2.274505e-01	ci left: 8.546681e-05	ci right 1.076988e-04	k: 296	n:3080000
Cons ci ratio: 4.624027e-02	ci left: 2.274086e-03	ci right 2.382048e-03	k: 7169	n:3080000
KS ci ratio: 1.361289e-01	ci left: 2.508318e-04	ci right 2.877807e-04	k: 828	n:3080000
KIAA1804   3080000 perm   4331 sec   (711 perm/sec)   p_kst 2.688312e-04   p_cons 2.327597e-03   p_joint 9.610390e-05

Joint ci ratio: 2.270685e-01	ci left: 8.549542e-05	ci right 1.076923e-04	k: 297	n:3090000
Cons ci ratio: 4.616307e-02	ci left: 2.274404e-03	ci right 2.382195e-03	k: 7193	n:3090000
KS ci ratio: 1.359650e-01	ci left: 2.506453e-04	ci right 2.875187e-04	k: 830	n:3090000
KIAA1804   3090000 perm   4357 sec   (709 perm/sec)   p_kst 2.686084e-04   p_cons 2.327832e-03   p_joint 9.611650e-05

Joint ci ratio: 2.259340e-01	ci left: 8.613247e-05	ci right 1.083675e-04	k: 300	n:3100000
Cons ci ratio: 4.607026e-02	ci left: 2.276314e-03	ci right 2.383974e-03	k: 7222	n:3100000
KS ci ratio: 1.355577e-01	ci left: 2.513949e-04	ci right 2.882588e-04	k: 835	n:3100000
KIAA1804   3100000 perm   4382 sec   (707 perm/sec)   p_kst 2.693548e-04   p_cons 2.329677e-03   p_joint 9.677419e-05

Joint ci ratio: 2.259341e-01	ci left: 8.585551e-05	ci right 1.080190e-04	k: 300	n:3110000
Cons ci ratio: 4.598119e-02	ci left: 2.277895e-03	ci right 2.385415e-03	k: 7250	n:3110000
KS ci ratio: 1.353959e-01	ci left: 2.512078e-04	ci right 2.879968e-04	k: 837	n:3110000
KIAA1804   3110000 perm   4408 sec   (705 perm/sec)   p_kst 2.691318e-04   p_cons 2.331190e-03   p_joint 9.646302e-05

Joint ci ratio: 2.255597e-01	ci left: 8.588273e-05	ci right 1.080114e-04	k: 301	n:3120000
Cons ci ratio: 4.590844e-02	ci left: 2.277881e-03	ci right 2.385226e-03	k: 7273	n:3120000
KS ci ratio: 1.353959e-01	ci left: 2.504026e-04	ci right 2.870738e-04	k: 837	n:3120000
KIAA1804   3120000 perm   4434 sec   (704 perm/sec)   p_kst 2.682692e-04   p_cons 2.331090e-03   p_joint 9.647436e-05

Joint ci ratio: 2.255597e-01	ci left: 8.560834e-05	ci right 1.076663e-04	k: 301	n:3130000
Cons ci ratio: 4.585493e-02	ci left: 2.275972e-03	ci right 2.383099e-03	k: 7290	n:3130000
KS ci ratio: 1.349938e-01	ci left: 2.511461e-04	ci right 2.878080e-04	k: 842	n:3130000
KIAA1804   3130000 perm   4461 sec   (702 perm/sec)   p_kst 2.690096e-04   p_cons 2.329073e-03   p_joint 9.616613e-05

Joint ci ratio: 2.251872e-01	ci left: 8.563619e-05	ci right 1.076599e-04	k: 302	n:3140000
Cons ci ratio: 4.578278e-02	ci left: 2.275965e-03	ci right 2.382918e-03	k: 7313	n:3140000
KS ci ratio: 1.347542e-01	ci left: 2.512694e-04	ci right 2.878791e-04	k: 845	n:3140000
KIAA1804   3140000 perm   4487 sec   (700 perm/sec)   p_kst 2.691083e-04   p_cons 2.328981e-03   p_joint 9.617834e-05

Joint ci ratio: 2.244476e-01	ci left: 8.596350e-05	ci right 1.079887e-04	k: 304	n:3150000
Cons ci ratio: 4.569224e-02	ci left: 2.277841e-03	ci right 2.384665e-03	k: 7342	n:3150000
KS ci ratio: 1.345159e-01	ci left: 2.513920e-04	ci right 2.879496e-04	k: 848	n:3150000
KIAA1804   3150000 perm   4513 sec   (698 perm/sec)   p_kst 2.692063e-04   p_cons 2.330794e-03   p_joint 9.650794e-05

Joint ci ratio: 2.244477e-01	ci left: 8.569146e-05	ci right 1.076470e-04	k: 304	n:3160000
Cons ci ratio: 4.560844e-02	ci left: 2.279079e-03	ci right 2.385760e-03	k: 7369	n:3160000
KS ci ratio: 1.343578e-01	ci left: 2.512081e-04	ci right 2.876926e-04	k: 850	n:3160000
KIAA1804   3160000 perm   4539 sec   (696 perm/sec)   p_kst 2.689873e-04   p_cons 2.331962e-03   p_joint 9.620253e-05

Joint ci ratio: 2.240806e-01	ci left: 8.571888e-05	ci right 1.076405e-04	k: 305	n:3170000
Cons ci ratio: 4.552201e-02	ci left: 2.280622e-03	ci right 2.387168e-03	k: 7397	n:3170000
KS ci ratio: 1.341215e-01	ci left: 2.513302e-04	ci right 2.877632e-04	k: 853	n:3170000
KIAA1804   3170000 perm   4564 sec   (694 perm/sec)   p_kst 2.690852e-04   p_cons 2.333438e-03   p_joint 9.621451e-05

Joint ci ratio: 2.237154e-01	ci left: 8.574616e-05	ci right 1.076341e-04	k: 306	n:3180000
Cons ci ratio: 4.546677e-02	ci left: 2.279046e-03	ci right 2.385386e-03	k: 7415	n:3180000
KS ci ratio: 1.340431e-01	ci left: 2.508438e-04	ci right 2.871833e-04	k: 854	n:3180000
KIAA1804   3180000 perm   4590 sec   (693 perm/sec)   p_kst 2.685535e-04   p_cons 2.331761e-03   p_joint 9.622642e-05

Joint ci ratio: 2.237154e-01	ci left: 8.547736e-05	ci right 1.072967e-04	k: 306	n:3190000
Cons ci ratio: 4.537504e-02	ci left: 2.281199e-03	ci right 2.387419e-03	k: 7445	n:3190000
KS ci ratio: 1.338866e-01	ci left: 2.506634e-04	ci right 2.869310e-04	k: 856	n:3190000
KIAA1804   3190000 perm   4617 sec   (691 perm/sec)   p_kst 2.683386e-04   p_cons 2.333856e-03   p_joint 9.592476e-05

Joint ci ratio: 2.237154e-01	ci left: 8.521024e-05	ci right 1.069614e-04	k: 306	n:3200000
Cons ci ratio: 4.529297e-02	ci left: 2.282412e-03	ci right 2.388491e-03	k: 7472	n:3200000
KS ci ratio: 1.336529e-01	ci left: 2.507862e-04	ci right 2.870032e-04	k: 859	n:3200000
KIAA1804   3200000 perm   4643 sec   (689 perm/sec)   p_kst 2.684375e-04   p_cons 2.335000e-03   p_joint 9.562500e-05

Joint ci ratio: 2.237155e-01	ci left: 8.494479e-05	ci right 1.066282e-04	k: 306	n:3210000
Cons ci ratio: 4.520530e-02	ci left: 2.284234e-03	ci right 2.390187e-03	k: 7501	n:3210000
KS ci ratio: 1.336530e-01	ci left: 2.500049e-04	ci right 2.861091e-04	k: 859	n:3210000
KIAA1804   3210000 perm   4670 sec   (687 perm/sec)   p_kst 2.676012e-04   p_cons 2.336760e-03   p_joint 9.532710e-05

Joint ci ratio: 2.233520e-01	ci left: 8.497415e-05	ci right 1.066250e-04	k: 307	n:3220000
Cons ci ratio: 4.513016e-02	ci left: 2.284817e-03	ci right 2.390616e-03	k: 7526	n:3220000
KS ci ratio: 1.334204e-01	ci left: 2.501291e-04	ci right 2.861833e-04	k: 862	n:3220000
KIAA1804   3220000 perm   4697 sec   (686 perm/sec)   p_kst 2.677019e-04   p_cons 2.337267e-03   p_joint 9.534161e-05

Joint ci ratio: 2.229903e-01	ci left: 8.500337e-05	ci right 1.066217e-04	k: 308	n:3230000
Cons ci ratio: 4.506436e-02	ci left: 2.284477e-03	ci right 2.390102e-03	k: 7548	n:3230000
KS ci ratio: 1.333432e-01	ci left: 2.496540e-04	ci right 2.856172e-04	k: 863	n:3230000
KIAA1804   3230000 perm   4724 sec   (684 perm/sec)   p_kst 2.671827e-04   p_cons 2.336842e-03   p_joint 9.535604e-05

Joint ci ratio: 2.222721e-01	ci left: 8.532388e-05	ci right 1.069443e-04	k: 310	n:3240000
Cons ci ratio: 4.498098e-02	ci left: 2.285971e-03	ci right 2.391465e-03	k: 7576	n:3240000
KS ci ratio: 1.332662e-01	ci left: 2.491818e-04	ci right 2.850546e-04	k: 864	n:3240000
KIAA1804   3240000 perm   4773 sec   (679 perm/sec)   p_kst 2.666667e-04   p_cons 2.338272e-03   p_joint 9.567901e-05

Joint ci ratio: 2.219156e-01	ci left: 8.535192e-05	ci right 1.069400e-04	k: 311	n:3250000
Cons ci ratio: 4.491287e-02	ci left: 2.285935e-03	ci right 2.391263e-03	k: 7599	n:3250000
KS ci ratio: 1.332662e-01	ci left: 2.484150e-04	ci right 2.841775e-04	k: 864	n:3250000
KIAA1804   3250000 perm   4800 sec   (677 perm/sec)   p_kst 2.658462e-04   p_cons 2.338154e-03   p_joint 9.569231e-05

Joint ci ratio: 2.215608e-01	ci left: 8.537981e-05	ci right 1.069358e-04	k: 312	n:3260000
Cons ci ratio: 4.484212e-02	ci left: 2.286202e-03	ci right 2.391372e-03	k: 7623	n:3260000
KS ci ratio: 1.331893e-01	ci left: 2.479496e-04	ci right 2.836228e-04	k: 865	n:3260000
KIAA1804   3260000 perm   4827 sec   (675 perm/sec)   p_kst 2.653374e-04   p_cons 2.338344e-03   p_joint 9.570552e-05

Joint ci ratio: 2.215609e-01	ci left: 8.511871e-05	ci right 1.066087e-04	k: 312	n:3270000
Cons ci ratio: 4.477464e-02	ci left: 2.286165e-03	ci right 2.391172e-03	k: 7646	n:3270000
KS ci ratio: 1.331894e-01	ci left: 2.471913e-04	ci right 2.827555e-04	k: 865	n:3270000
KIAA1804   3270000 perm   4854 sec   (674 perm/sec)   p_kst 2.645260e-04   p_cons 2.338226e-03   p_joint 9.541284e-05

Joint ci ratio: 2.212078e-01	ci left: 8.514718e-05	ci right 1.066055e-04	k: 313	n:3280000
Cons ci ratio: 4.470453e-02	ci left: 2.286431e-03	ci right 2.391280e-03	k: 7670	n:3280000
KS ci ratio: 1.330358e-01	ci left: 2.470271e-04	ci right 2.825235e-04	k: 867	n:3280000
KIAA1804   3280000 perm   4881 sec   (672 perm/sec)   p_kst 2.643293e-04   p_cons 2.338415e-03   p_joint 9.542683e-05

Joint ci ratio: 2.205066e-01	ci left: 8.546265e-05	ci right 1.069229e-04	k: 315	n:3290000
Cons ci ratio: 4.463476e-02	ci left: 2.286694e-03	ci right 2.391388e-03	k: 7694	n:3290000
KS ci ratio: 1.327303e-01	ci left: 2.474517e-04	ci right 2.829209e-04	k: 871	n:3290000
KIAA1804   3290000 perm   4908 sec   (670 perm/sec)   p_kst 2.647416e-04   p_cons 2.338602e-03   p_joint 9.574468e-05

Joint ci ratio: 2.205066e-01	ci left: 8.520367e-05	ci right 1.065989e-04	k: 315	n:3300000
Cons ci ratio: 4.457400e-02	ci left: 2.286058e-03	ci right 2.390576e-03	k: 7715	n:3300000
KS ci ratio: 1.326543e-01	ci left: 2.469948e-04	ci right 2.823767e-04	k: 872	n:3300000
KIAA1804   3300000 perm   4935 sec   (669 perm/sec)   p_kst 2.642424e-04   p_cons 2.337879e-03   p_joint 9.545455e-05

Joint ci ratio: 2.201586e-01	ci left: 8.523170e-05	ci right 1.065956e-04	k: 316	n:3310000
Cons ci ratio: 4.450195e-02	ci left: 2.286620e-03	ci right 2.390991e-03	k: 7740	n:3310000
KS ci ratio: 1.325027e-01	ci left: 2.468328e-04	ci right 2.821478e-04	k: 874	n:3310000
KIAA1804   3310000 perm   4962 sec   (667 perm/sec)   p_kst 2.640483e-04   p_cons 2.338369e-03   p_joint 9.546828e-05

Joint ci ratio: 2.201586e-01	ci left: 8.497498e-05	ci right 1.062745e-04	k: 316	n:3320000
Cons ci ratio: 4.444173e-02	ci left: 2.285987e-03	ci right 2.390185e-03	k: 7761	n:3320000
KS ci ratio: 1.322761e-01	ci left: 2.469630e-04	ci right 2.822315e-04	k: 877	n:3320000
KIAA1804   3320000 perm   4991 sec   (665 perm/sec)   p_kst 2.641566e-04   p_cons 2.337651e-03   p_joint 9.518072e-05

Joint ci ratio: 2.201586e-01	ci left: 8.471979e-05	ci right 1.059554e-04	k: 316	n:3330000
Cons ci ratio: 4.436746e-02	ci left: 2.286844e-03	ci right 2.390902e-03	k: 7787	n:3330000
KS ci ratio: 1.321257e-01	ci left: 2.468021e-04	ci right 2.820044e-04	k: 879	n:3330000
KIAA1804   3330000 perm   5018 sec   (664 perm/sec)   p_kst 2.639640e-04   p_cons 2.338438e-03   p_joint 9.489489e-05

Joint ci ratio: 2.198122e-01	ci left: 8.474905e-05	ci right 1.059540e-04	k: 317	n:3340000
Cons ci ratio: 4.430209e-02	ci left: 2.286807e-03	ci right 2.390706e-03	k: 7810	n:3340000
KS ci ratio: 1.319010e-01	ci left: 2.469317e-04	ci right 2.820879e-04	k: 882	n:3340000
KIAA1804   3340000 perm   5045 sec   (662 perm/sec)   p_kst 2.640719e-04   p_cons 2.338323e-03   p_joint 9.491018e-05

Joint ci ratio: 2.194674e-01	ci left: 8.477815e-05	ci right 1.059527e-04	k: 318	n:3350000
Cons ci ratio: 4.421722e-02	ci left: 2.288837e-03	ci right 2.392624e-03	k: 7840	n:3350000
KS ci ratio: 1.317519e-01	ci left: 2.467719e-04	ci right 2.818626e-04	k: 884	n:3350000
KIAA1804   3350000 perm   5072 sec   (660 perm/sec)   p_kst 2.638806e-04   p_cons 2.340299e-03   p_joint 9.492537e-05

Joint ci ratio: 2.194674e-01	ci left: 8.452583e-05	ci right 1.056373e-04	k: 318	n:3360000
Cons ci ratio: 4.417504e-02	ci left: 2.286440e-03	ci right 2.390016e-03	k: 7855	n:3360000
KS ci ratio: 1.316776e-01	ci left: 2.463253e-04	ci right 2.813311e-04	k: 885	n:3360000
KIAA1804   3360000 perm   5100 sec   (659 perm/sec)   p_kst 2.633929e-04   p_cons 2.337798e-03   p_joint 9.464286e-05

Joint ci ratio: 2.187826e-01	ci left: 8.483592e-05	ci right 1.059499e-04	k: 320	n:3370000
Cons ci ratio: 4.413579e-02	ci left: 2.283763e-03	ci right 2.387124e-03	k: 7869	n:3370000
KS ci ratio: 1.313813e-01	ci left: 2.467422e-04	ci right 2.817223e-04	k: 889	n:3370000
KIAA1804   3370000 perm   5129 sec   (657 perm/sec)   p_kst 2.637982e-04   p_cons 2.335015e-03   p_joint 9.495549e-05

Joint ci ratio: 2.184426e-01	ci left: 8.486459e-05	ci right 1.059484e-04	k: 321	n:3380000
Cons ci ratio: 4.407704e-02	ci left: 2.283151e-03	ci right 2.386344e-03	k: 7890	n:3380000
KS ci ratio: 1.308676e-01	ci left: 2.480153e-04	ci right 2.830277e-04	k: 896	n:3380000
KIAA1804   3380000 perm   5173 sec   (653 perm/sec)   p_kst 2.650888e-04   p_cons 2.334320e-03   p_joint 9.497041e-05

Joint ci ratio: 2.181042e-01	ci left: 8.489311e-05	ci right 1.059470e-04	k: 322	n:3390000
Cons ci ratio: 4.399345e-02	ci left: 2.285168e-03	ci right 2.388251e-03	k: 7920	n:3390000
KS ci ratio: 1.306493e-01	ci left: 2.481397e-04	ci right 2.831067e-04	k: 899	n:3390000
KIAA1804   3390000 perm   5200 sec   (652 perm/sec)   p_kst 2.651917e-04   p_cons 2.336283e-03   p_joint 9.498525e-05

Joint ci ratio: 2.177674e-01	ci left: 8.492149e-05	ci right 1.059455e-04	k: 323	n:3400000
Cons ci ratio: 4.394358e-02	ci left: 2.283683e-03	ci right 2.386579e-03	k: 7938	n:3400000
KS ci ratio: 1.303599e-01	ci left: 2.485480e-04	ci right 2.834889e-04	k: 903	n:3400000
KIAA1804   3400000 perm   5227 sec   (650 perm/sec)   p_kst 2.655882e-04   p_cons 2.334706e-03   p_joint 9.500000e-05

Joint ci ratio: 2.177674e-01	ci left: 8.467245e-05	ci right 1.056348e-04	k: 323	n:3410000
Cons ci ratio: 4.388007e-02	ci left: 2.283657e-03	ci right 2.386399e-03	k: 7961	n:3410000
KS ci ratio: 1.301441e-01	ci left: 2.486702e-04	ci right 2.835659e-04	k: 906	n:3410000
KIAA1804   3410000 perm   5256 sec   (649 perm/sec)   p_kst 2.656891e-04   p_cons 2.334604e-03   p_joint 9.472141e-05

Joint ci ratio: 2.177674e-01	ci left: 8.442487e-05	ci right 1.053260e-04	k: 323	n:3420000
Cons ci ratio: 4.382783e-02	ci left: 2.282474e-03	ci right 2.385038e-03	k: 7980	n:3420000
KS ci ratio: 1.300009e-01	ci left: 2.485088e-04	ci right 2.833406e-04	k: 908	n:3420000
KIAA1804   3420000 perm   5284 sec   (647 perm/sec)   p_kst 2.654971e-04   p_cons 2.333333e-03   p_joint 9.444444e-05

Joint ci ratio: 2.177675e-01	ci left: 8.417873e-05	ci right 1.050189e-04	k: 323	n:3430000
Cons ci ratio: 4.375934e-02	ci left: 2.283029e-03	ci right 2.385453e-03	k: 8005	n:3430000
KS ci ratio: 1.298581e-01	ci left: 2.483485e-04	ci right 2.831166e-04	k: 910	n:3430000
KIAA1804   3430000 perm   5312 sec   (646 perm/sec)   p_kst 2.653061e-04   p_cons 2.333819e-03   p_joint 9.416910e-05

Joint ci ratio: 2.170984e-01	ci left: 8.448376e-05	ci right 1.053266e-04	k: 325	n:3440000
Cons ci ratio: 4.368572e-02	ci left: 2.284155e-03	ci right 2.386453e-03	k: 8032	n:3440000
KS ci ratio: 1.297869e-01	ci left: 2.479078e-04	ci right 2.825937e-04	k: 911	n:3440000
KIAA1804   3440000 perm   5340 sec   (644 perm/sec)   p_kst 2.648256e-04   p_cons 2.334884e-03   p_joint 9.447674e-05

Joint ci ratio: 2.170984e-01	ci left: 8.423888e-05	ci right 1.050213e-04	k: 325	n:3450000
Cons ci ratio: 4.360433e-02	ci left: 2.286135e-03	ci right 2.388326e-03	k: 8062	n:3450000
KS ci ratio: 1.297159e-01	ci left: 2.474696e-04	ci right 2.820739e-04	k: 912	n:3450000
KIAA1804   3450000 perm   5370 sec   (642 perm/sec)   p_kst 2.643478e-04   p_cons 2.336812e-03   p_joint 9.420290e-05

Joint ci ratio: 2.167662e-01	ci left: 8.426873e-05	ci right 1.050225e-04	k: 326	n:3460000
Cons ci ratio: 4.353418e-02	ci left: 2.286960e-03	ci right 2.389020e-03	k: 8088	n:3460000
KS ci ratio: 1.295740e-01	ci left: 2.473137e-04	ci right 2.818554e-04	k: 914	n:3460000
KIAA1804   3460000 perm   5399 sec   (641 perm/sec)   p_kst 2.641618e-04   p_cons 2.337572e-03   p_joint 9.421965e-05

Joint ci ratio: 2.164355e-01	ci left: 8.429843e-05	ci right 1.050236e-04	k: 327	n:3470000
Cons ci ratio: 4.344827e-02	ci left: 2.289491e-03	ci right 2.391457e-03	k: 8120	n:3470000
KS ci ratio: 1.292214e-01	ci left: 2.479953e-04	ci right 2.825307e-04	k: 919	n:3470000
KIAA1804   3470000 perm   5427 sec   (639 perm/sec)   p_kst 2.648415e-04   p_cons 2.340058e-03   p_joint 9.423631e-05

Joint ci ratio: 2.198126e-01	ci left: 8.133959e-05	ci right 1.016915e-04	k: 317	n:3480000
Cons ci ratio: 4.336553e-02	ci left: 2.291724e-03	ci right 2.393590e-03	k: 8151	n:3480000
KS ci ratio: 1.290812e-01	ci left: 2.478388e-04	ci right 2.823121e-04	k: 921	n:3480000
KIAA1804   3480000 perm   5455 sec   (638 perm/sec)   p_kst 2.646552e-04   p_cons 2.342241e-03   p_joint 9.109195e-05

Joint ci ratio: 2.198126e-01	ci left: 8.110652e-05	ci right 1.014002e-04	k: 317	n:3490000
Cons ci ratio: 4.329652e-02	ci left: 2.292526e-03	ci right 2.394262e-03	k: 8177	n:3490000
KS ci ratio: 1.289414e-01	ci left: 2.476832e-04	ci right 2.820947e-04	k: 923	n:3490000
KIAA1804   3490000 perm   5486 sec   (636 perm/sec)   p_kst 2.644699e-04   p_cons 2.342980e-03   p_joint 9.083095e-05

Joint ci ratio: 2.191246e-01	ci left: 8.141481e-05	ci right 1.017132e-04	k: 319	n:3500000
Cons ci ratio: 4.323313e-02	ci left: 2.292759e-03	ci right 2.394353e-03	k: 8201	n:3500000
KS ci ratio: 1.288718e-01	ci left: 2.472520e-04	ci right 2.815836e-04	k: 924	n:3500000
KIAA1804   3500000 perm   5514 sec   (635 perm/sec)   p_kst 2.640000e-04   p_cons 2.343143e-03   p_joint 9.114286e-05

Joint ci ratio: 2.184430e-01	ci left: 8.172144e-05	ci right 1.020244e-04	k: 321	n:3510000
Cons ci ratio: 4.318053e-02	ci left: 2.291864e-03	ci right 2.393291e-03	k: 8221	n:3510000
KS ci ratio: 1.286633e-01	ci left: 2.473748e-04	ci right 2.816636e-04	k: 927	n:3510000
KIAA1804   3510000 perm   5542 sec   (633 perm/sec)   p_kst 2.641026e-04   p_cons 2.342165e-03   p_joint 9.145299e-05

Joint ci ratio: 2.184430e-01	ci left: 8.148927e-05	ci right 1.017346e-04	k: 321	n:3520000
Cons ci ratio: 4.312027e-02	ci left: 2.291816e-03	ci right 2.393096e-03	k: 8244	n:3520000
KS ci ratio: 1.285249e-01	ci left: 2.472219e-04	ci right 2.814499e-04	k: 929	n:3520000
KIAA1804   3520000 perm   5571 sec   (632 perm/sec)   p_kst 2.639205e-04   p_cons 2.342045e-03   p_joint 9.119318e-05

Joint ci ratio: 2.184431e-01	ci left: 8.125842e-05	ci right 1.014464e-04	k: 321	n:3530000
Cons ci ratio: 4.305503e-02	ci left: 2.292330e-03	ci right 2.393475e-03	k: 8269	n:3530000
KS ci ratio: 1.284558e-01	ci left: 2.467957e-04	ci right 2.809450e-04	k: 930	n:3530000
KIAA1804   3530000 perm   5600 sec   (630 perm/sec)   p_kst 2.634561e-04   p_cons 2.342493e-03   p_joint 9.093484e-05

Joint ci ratio: 2.229912e-01	ci left: 7.755953e-05	ci right 9.728486e-05	k: 308	n:3540000
Cons ci ratio: 4.300049e-02	ci left: 2.291723e-03	ci right 2.392710e-03	k: 8290	n:3540000
KS ci ratio: 1.282494e-01	ci left: 2.469188e-04	ci right 2.810260e-04	k: 933	n:3540000
KIAA1804   3540000 perm   5630 sec   (629 perm/sec)   p_kst 2.635593e-04   p_cons 2.341808e-03   p_joint 8.700565e-05

Joint ci ratio: 2.325999e-01	ci left: 7.070043e-05	ci right 8.956762e-05	k: 283	n:3550000
Cons ci ratio: 4.297466e-02	ci left: 2.288054e-03	ci right 2.388817e-03	k: 8300	n:3550000
KS ci ratio: 1.280439e-01	ci left: 2.470413e-04	ci right 2.811065e-04	k: 936	n:3550000
KIAA1804   3550000 perm   5659 sec   (627 perm/sec)   p_kst 2.636620e-04   p_cons 2.338028e-03   p_joint 7.971831e-05

Joint ci ratio: 2.321914e-01	ci left: 7.076638e-05	ci right 8.961325e-05	k: 284	n:3560000
Cons ci ratio: 4.291008e-02	ci left: 2.288573e-03	ci right 2.389205e-03	k: 8325	n:3560000
KS ci ratio: 1.279075e-01	ci left: 2.468911e-04	ci right 2.808967e-04	k: 938	n:3560000
KIAA1804   3560000 perm   5688 sec   (626 perm/sec)   p_kst 2.634831e-04   p_cons 2.338483e-03   p_joint 7.977528e-05

Joint ci ratio: 2.317851e-01	ci left: 7.083199e-05	ci right 8.965859e-05	k: 285	n:3570000
Cons ci ratio: 4.283295e-02	ci left: 2.290476e-03	ci right 2.391006e-03	k: 8355	n:3570000
KS ci ratio: 1.275007e-01	ci left: 2.478266e-04	ci right 2.818442e-04	k: 944	n:3570000
KIAA1804   3570000 perm   5718 sec   (624 perm/sec)   p_kst 2.644258e-04   p_cons 2.340336e-03   p_joint 7.983193e-05

Joint ci ratio: 2.317852e-01	ci left: 7.063413e-05	ci right 8.940815e-05	k: 285	n:3580000
Cons ci ratio: 4.276389e-02	ci left: 2.291539e-03	ci right 2.391950e-03	k: 8382	n:3580000
KS ci ratio: 1.273660e-01	ci left: 2.476752e-04	ci right 2.816334e-04	k: 946	n:3580000
KIAA1804   3580000 perm   5747 sec   (623 perm/sec)   p_kst 2.642458e-04   p_cons 2.341341e-03   p_joint 7.960894e-05

Joint ci ratio: 2.317852e-01	ci left: 7.043738e-05	ci right 8.915911e-05	k: 285	n:3590000
Cons ci ratio: 4.271554e-02	ci left: 2.290392e-03	ci right 2.390636e-03	k: 8401	n:3590000
KS ci ratio: 1.272317e-01	ci left: 2.475246e-04	ci right 2.814237e-04	k: 948	n:3590000
KIAA1804   3590000 perm   5776 sec   (621 perm/sec)   p_kst 2.640669e-04   p_cons 2.340111e-03   p_joint 7.938719e-05

Joint ci ratio: 2.313810e-01	ci left: 7.050338e-05	ci right 8.920531e-05	k: 286	n:3600000
Cons ci ratio: 4.265466e-02	ci left: 2.290626e-03	ci right 2.390733e-03	k: 8425	n:3600000
KS ci ratio: 1.271648e-01	ci left: 2.471060e-04	ci right 2.809286e-04	k: 949	n:3600000
KIAA1804   3600000 perm   5806 sec   (620 perm/sec)   p_kst 2.636111e-04   p_cons 2.340278e-03   p_joint 7.944444e-05

Joint ci ratio: 2.313811e-01	ci left: 7.030808e-05	ci right 8.895820e-05	k: 286	n:3610000
Cons ci ratio: 4.261426e-02	ci left: 2.288665e-03	ci right 2.388590e-03	k: 8441	n:3610000
KS ci ratio: 1.269645e-01	ci left: 2.472261e-04	ci right 2.810078e-04	k: 952	n:3610000
KIAA1804   3610000 perm   5835 sec   (619 perm/sec)   p_kst 2.637119e-04   p_cons 2.338227e-03   p_joint 7.922438e-05

Joint ci ratio: 2.334235e-01	ci left: 6.881305e-05	ci right 8.725098e-05	k: 281	n:3620000
Cons ci ratio: 4.253367e-02	ci left: 2.291089e-03	ci right 2.390925e-03	k: 8473	n:3620000
KS ci ratio: 1.267651e-01	ci left: 2.473456e-04	ci right 2.810866e-04	k: 955	n:3620000
KIAA1804   3620000 perm   5865 sec   (617 perm/sec)   p_kst 2.638122e-04   p_cons 2.340608e-03   p_joint 7.762431e-05

Joint ci ratio: 2.334235e-01	ci left: 6.862348e-05	ci right 8.701062e-05	k: 281	n:3630000
Cons ci ratio: 4.246605e-02	ci left: 2.292136e-03	ci right 2.391856e-03	k: 8500	n:3630000
KS ci ratio: 1.267651e-01	ci left: 2.466642e-04	ci right 2.803122e-04	k: 955	n:3630000
KIAA1804   3630000 perm   5894 sec   (616 perm/sec)   p_kst 2.630854e-04   p_cons 2.341598e-03   p_joint 7.741047e-05

Joint ci ratio: 2.330107e-01	ci left: 6.869363e-05	ci right 8.706233e-05	k: 282	n:3640000
Cons ci ratio: 4.240872e-02	ci left: 2.292091e-03	ci right 2.391671e-03	k: 8523	n:3640000
KS ci ratio: 1.264349e-01	ci left: 2.473167e-04	ci right 2.809592e-04	k: 960	n:3640000
KIAA1804   3640000 perm   5924 sec   (614 perm/sec)   p_kst 2.637363e-04   p_cons 2.341484e-03   p_joint 7.747253e-05

Joint ci ratio: 2.330107e-01	ci left: 6.850543e-05	ci right 8.682380e-05	k: 282	n:3650000
Cons ci ratio: 4.235411e-02	ci left: 2.291775e-03	ci right 2.391209e-03	k: 8545	n:3650000
KS ci ratio: 1.262380e-01	ci left: 2.474350e-04	ci right 2.810374e-04	k: 963	n:3650000
KIAA1804   3650000 perm   5954 sec   (613 perm/sec)   p_kst 2.638356e-04   p_cons 2.341096e-03   p_joint 7.726027e-05

Joint ci ratio: 2.330108e-01	ci left: 6.831825e-05	ci right 8.658658e-05	k: 282	n:3660000
Cons ci ratio: 4.229476e-02	ci left: 2.292001e-03	ci right 2.391303e-03	k: 8569	n:3660000
KS ci ratio: 1.261073e-01	ci left: 2.472882e-04	ci right 2.808332e-04	k: 965	n:3660000
KIAA1804   3660000 perm   5984 sec   (612 perm/sec)   p_kst 2.636612e-04   p_cons 2.341257e-03   p_joint 7.704918e-05

Joint ci ratio: 1.783544e-01	ci left: 1.198712e-04	ci right 1.435996e-04	k: 482	n:3670000
Cons ci ratio: 4.223566e-02	ci left: 2.292226e-03	ci right 2.391396e-03	k: 8593	n:3670000
KS ci ratio: 1.247582e-01	ci left: 2.521569e-04	ci right 2.859694e-04	k: 986	n:3670000
KIAA1804   3670000 perm   6014 sec   (610 perm/sec)   p_kst 2.686649e-04   p_cons 2.341417e-03   p_joint 1.313351e-04

Joint ci ratio: 1.781701e-01	ci left: 1.198051e-04	ci right 1.434933e-04	k: 483	n:3680000
Cons ci ratio: 4.216699e-02	ci left: 2.293526e-03	ci right 2.392586e-03	k: 8621	n:3680000
KS ci ratio: 1.245690e-01	ci left: 2.522615e-04	ci right 2.860330e-04	k: 989	n:3680000
KIAA1804   3680000 perm   6045 sec   (609 perm/sec)   p_kst 2.687500e-04   p_cons 2.342663e-03   p_joint 1.312500e-04

Joint ci ratio: 1.781701e-01	ci left: 1.194804e-04	ci right 1.431044e-04	k: 483	n:3690000
Cons ci ratio: 4.211331e-02	ci left: 2.293209e-03	ci right 2.392127e-03	k: 8643	n:3690000
KS ci ratio: 1.243807e-01	ci left: 2.523656e-04	ci right 2.860961e-04	k: 992	n:3690000
KIAA1804   3690000 perm   6076 sec   (607 perm/sec)   p_kst 2.688347e-04   p_cons 2.342276e-03   p_joint 1.308943e-04

Joint ci ratio: 1.781701e-01	ci left: 1.191575e-04	ci right 1.427176e-04	k: 483	n:3700000
Cons ci ratio: 4.206469e-02	ci left: 2.292360e-03	ci right 2.391124e-03	k: 8663	n:3700000
KS ci ratio: 1.243807e-01	ci left: 2.516835e-04	ci right 2.853229e-04	k: 992	n:3700000
KIAA1804   3700000 perm   6106 sec   (606 perm/sec)   p_kst 2.681081e-04   p_cons 2.341351e-03   p_joint 1.305405e-04

Joint ci ratio: 1.774384e-01	ci left: 1.198665e-04	ci right 1.434590e-04	k: 487	n:3710000
Cons ci ratio: 4.199202e-02	ci left: 2.294182e-03	ci right 2.392850e-03	k: 8693	n:3710000
KS ci ratio: 1.242557e-01	ci left: 2.515274e-04	ci right 2.851097e-04	k: 994	n:3710000
KIAA1804   3710000 perm   6136 sec   (605 perm/sec)   p_kst 2.679245e-04   p_cons 2.343127e-03   p_joint 1.312668e-04

Joint ci ratio: 1.768954e-01	ci left: 1.203150e-04	ci right 1.439156e-04	k: 490	n:3720000
Cons ci ratio: 4.193176e-02	ci left: 2.294665e-03	ci right 2.393209e-03	k: 8718	n:3720000
KS ci ratio: 1.240688e-01	ci left: 2.516327e-04	ci right 2.851747e-04	k: 997	n:3720000
KIAA1804   3720000 perm   6167 sec   (603 perm/sec)   p_kst 2.680108e-04   p_cons 2.343548e-03   p_joint 1.317204e-04

Joint ci ratio: 1.765362e-01	ci left: 1.205049e-04	ci right 1.440896e-04	k: 492	n:3730000
Cons ci ratio: 4.187177e-02	ci left: 2.295145e-03	ci right 2.393565e-03	k: 8743	n:3730000
KS ci ratio: 1.238827e-01	ci left: 2.517374e-04	ci right 2.852394e-04	k: 1000	n:3730000
KIAA1804   3730000 perm   6197 sec   (602 perm/sec)   p_kst 2.680965e-04   p_cons 2.343968e-03   p_joint 1.319035e-04

Joint ci ratio: 1.761792e-01	ci left: 1.206938e-04	ci right 1.442627e-04	k: 494	n:3740000
Cons ci ratio: 4.180247e-02	ci left: 2.296682e-03	ci right 2.395000e-03	k: 8772	n:3740000
KS ci ratio: 1.238209e-01	ci left: 2.513234e-04	ci right 2.847524e-04	k: 1001	n:3740000
KIAA1804   3740000 perm   6229 sec   (600 perm/sec)   p_kst 2.676471e-04   p_cons 2.345455e-03   p_joint 1.320856e-04

Joint ci ratio: 1.760015e-01	ci left: 1.206269e-04	ci right 1.441564e-04	k: 495	n:3750000
Cons ci ratio: 4.173828e-02	ci left: 2.297682e-03	ci right 2.395889e-03	k: 8799	n:3750000
KS ci ratio: 1.236975e-01	ci left: 2.511700e-04	ci right 2.845429e-04	k: 1003	n:3750000
KIAA1804   3750000 perm   6260 sec   (599 perm/sec)   p_kst 2.674667e-04   p_cons 2.346400e-03   p_joint 1.320000e-04

Joint ci ratio: 1.752960e-01	ci left: 1.213231e-04	ci right 1.448835e-04	k: 499	n:3760000
Cons ci ratio: 4.170042e-02	ci left: 2.295782e-03	ci right 2.393817e-03	k: 8815	n:3760000
KS ci ratio: 1.233906e-01	ci left: 2.517907e-04	ci right 2.851570e-04	k: 1008	n:3760000
KIAA1804   3760000 perm   6291 sec   (598 perm/sec)   p_kst 2.680851e-04   p_cons 2.344415e-03   p_joint 1.327128e-04

Joint ci ratio: 1.751210e-01	ci left: 1.212549e-04	ci right 1.447761e-04	k: 500	n:3770000
Cons ci ratio: 4.162962e-02	ci left: 2.297567e-03	ci right 2.395507e-03	k: 8845	n:3770000
KS ci ratio: 1.232685e-01	ci left: 2.516370e-04	ci right 2.849475e-04	k: 1010	n:3770000
KIAA1804   3770000 perm   6322 sec   (596 perm/sec)   p_kst 2.679045e-04   p_cons 2.346154e-03   p_joint 1.326260e-04

Joint ci ratio: 1.749465e-01	ci left: 1.211871e-04	ci right 1.446692e-04	k: 501	n:3780000
Cons ci ratio: 4.157091e-02	ci left: 2.298034e-03	ci right 2.395853e-03	k: 8870	n:3780000
KS ci ratio: 1.230860e-01	ci left: 2.517405e-04	ci right 2.850117e-04	k: 1013	n:3780000
KIAA1804   3780000 perm   6352 sec   (595 perm/sec)   p_kst 2.679894e-04   p_cons 2.346561e-03   p_joint 1.325397e-04

Joint ci ratio: 1.747725e-01	ci left: 1.211197e-04	ci right 1.445629e-04	k: 502	n:3790000
Cons ci ratio: 4.151946e-02	ci left: 2.297715e-03	ci right 2.395396e-03	k: 8892	n:3790000
KS ci ratio: 1.230254e-01	ci left: 2.513320e-04	ci right 2.845317e-04	k: 1014	n:3790000
KIAA1804   3790000 perm   6384 sec   (594 perm/sec)   p_kst 2.675462e-04   p_cons 2.346174e-03   p_joint 1.324538e-04

Joint ci ratio: 1.745991e-01	ci left: 1.210526e-04	ci right 1.444571e-04	k: 503	n:3800000
Cons ci ratio: 4.147054e-02	ci left: 2.297137e-03	ci right 2.394676e-03	k: 8913	n:3800000
KS ci ratio: 1.228440e-01	ci left: 2.514358e-04	ci right 2.845967e-04	k: 1017	n:3800000
KIAA1804   3800000 perm   6415 sec   (592 perm/sec)   p_kst 2.676316e-04   p_cons 2.345526e-03   p_joint 1.323684e-04

Joint ci ratio: 1.740817e-01	ci left: 1.214879e-04	ci right 1.448997e-04	k: 506	n:3810000
Cons ci ratio: 4.142179e-02	ci left: 2.296563e-03	ci right 2.393960e-03	k: 8934	n:3810000
KS ci ratio: 1.227235e-01	ci left: 2.512847e-04	ci right 2.843907e-04	k: 1019	n:3810000
KIAA1804   3810000 perm   6447 sec   (591 perm/sec)   p_kst 2.674541e-04   p_cons 2.344882e-03   p_joint 1.328084e-04

Joint ci ratio: 1.739103e-01	ci left: 1.214203e-04	ci right 1.447936e-04	k: 507	n:3820000
Cons ci ratio: 4.135471e-02	ci left: 2.298064e-03	ci right 2.395363e-03	k: 8963	n:3820000
KS ci ratio: 1.225434e-01	ci left: 2.513881e-04	ci right 2.844557e-04	k: 1022	n:3820000
KIAA1804   3820000 perm   6478 sec   (590 perm/sec)   p_kst 2.675393e-04   p_cons 2.346335e-03   p_joint 1.327225e-04

Joint ci ratio: 1.733990e-01	ci left: 1.218525e-04	ci right 1.452328e-04	k: 510	n:3830000
Cons ci ratio: 4.130867e-02	ci left: 2.297232e-03	ci right 2.394385e-03	k: 8983	n:3830000
KS ci ratio: 1.223045e-01	ci left: 2.517441e-04	ci right 2.847893e-04	k: 1026	n:3830000
KIAA1804   3830000 perm   6509 sec   (588 perm/sec)   p_kst 2.678851e-04   p_cons 2.345431e-03   p_joint 1.331593e-04

Joint ci ratio: 1.733990e-01	ci left: 1.215352e-04	ci right 1.448546e-04	k: 510	n:3840000
Cons ci ratio: 4.124671e-02	ci left: 2.298208e-03	ci right 2.395253e-03	k: 9010	n:3840000
KS ci ratio: 1.220670e-01	ci left: 2.520984e-04	ci right 2.851212e-04	k: 1030	n:3840000
KIAA1804   3840000 perm   6541 sec   (587 perm/sec)   p_kst 2.682292e-04   p_cons 2.346354e-03   p_joint 1.328125e-04

Joint ci ratio: 1.732296e-01	ci left: 1.214679e-04	ci right 1.447493e-04	k: 511	n:3850000
Cons ci ratio: 4.119189e-02	ci left: 2.298408e-03	ci right 2.395330e-03	k: 9034	n:3850000
KS ci ratio: 1.219488e-01	ci left: 2.519472e-04	ci right 2.849159e-04	k: 1032	n:3850000
KIAA1804   3850000 perm   6572 sec   (586 perm/sec)   p_kst 2.680519e-04   p_cons 2.346494e-03   p_joint 1.327273e-04

Joint ci ratio: 1.728923e-01	ci left: 1.216490e-04	ci right 1.449149e-04	k: 513	n:3860000
Cons ci ratio: 4.115323e-02	ci left: 2.296813e-03	ci right 2.393574e-03	k: 9051	n:3860000
KS ci ratio: 1.217134e-01	ci left: 2.522992e-04	ci right 2.852456e-04	k: 1036	n:3860000
KIAA1804   3860000 perm   6603 sec   (585 perm/sec)   p_kst 2.683938e-04   p_cons 2.344819e-03   p_joint 1.329016e-04

Joint ci ratio: 1.728923e-01	ci left: 1.213346e-04	ci right 1.445405e-04	k: 513	n:3870000
Cons ci ratio: 4.111240e-02	ci left: 2.295481e-03	ci right 2.392088e-03	k: 9069	n:3870000
KS ci ratio: 1.217134e-01	ci left: 2.516472e-04	ci right 2.845086e-04	k: 1036	n:3870000
KIAA1804   3870000 perm   6636 sec   (583 perm/sec)   p_kst 2.677003e-04   p_cons 2.343411e-03   p_joint 1.325581e-04

Joint ci ratio: 1.728923e-01	ci left: 1.210219e-04	ci right 1.441679e-04	k: 513	n:3880000
Cons ci ratio: 4.106717e-02	ci left: 2.294666e-03	ci right 2.391130e-03	k: 9089	n:3880000
KS ci ratio: 1.216548e-01	ci left: 2.512486e-04	ci right 2.840409e-04	k: 1037	n:3880000
KIAA1804   3880000 perm   6666 sec   (582 perm/sec)   p_kst 2.672680e-04   p_cons 2.342526e-03   p_joint 1.322165e-04

Joint ci ratio: 1.725569e-01	ci left: 1.212027e-04	ci right 1.443337e-04	k: 515	n:3890000
Cons ci ratio: 4.102208e-02	ci left: 2.293856e-03	ci right 2.390178e-03	k: 9109	n:3890000
KS ci ratio: 1.214794e-01	ci left: 2.513504e-04	ci right 2.841054e-04	k: 1040	n:3890000
KIAA1804   3890000 perm   6698 sec   (581 perm/sec)   p_kst 2.673522e-04   p_cons 2.341645e-03   p_joint 1.323907e-04

Joint ci ratio: 1.800406e-01	ci left: 1.105976e-04	ci right 1.327199e-04	k: 473	n:3900000
Cons ci ratio: 4.098839e-02	ci left: 2.291781e-03	ci right 2.387935e-03	k: 9124	n:3900000
KS ci ratio: 1.213629e-01	ci left: 2.512032e-04	ci right 2.839053e-04	k: 1042	n:3900000
KIAA1804   3900000 perm   6729 sec   (580 perm/sec)   p_kst 2.671795e-04   p_cons 2.339487e-03   p_joint 1.212821e-04

Joint ci ratio: 1.798510e-01	ci left: 1.105590e-04	ci right 1.326477e-04	k: 474	n:3910000
Cons ci ratio: 4.093908e-02	ci left: 2.291489e-03	ci right 2.387512e-03	k: 9146	n:3910000
KS ci ratio: 1.210730e-01	ci left: 2.518007e-04	ci right 2.844967e-04	k: 1047	n:3910000
KIAA1804   3910000 perm   6761 sec   (578 perm/sec)   p_kst 2.677749e-04   p_cons 2.339130e-03   p_joint 1.212276e-04

Joint ci ratio: 1.808053e-01	ci left: 1.090590e-04	ci right 1.309763e-04	k: 469	n:3920000
Cons ci ratio: 4.089665e-02	ci left: 2.290440e-03	ci right 2.386317e-03	k: 9165	n:3920000
KS ci ratio: 1.210153e-01	ci left: 2.514058e-04	ci right 2.840338e-04	k: 1048	n:3920000
KIAA1804   3920000 perm   6793 sec   (577 perm/sec)   p_kst 2.673469e-04   p_cons 2.338010e-03   p_joint 1.196429e-04

Joint ci ratio: 1.802309e-01	ci left: 1.095104e-04	ci right 1.314409e-04	k: 472	n:3930000
Cons ci ratio: 4.083430e-02	ci left: 2.291664e-03	ci right 2.387443e-03	k: 9193	n:3930000
KS ci ratio: 1.204994e-01	ci left: 2.529870e-04	ci right 2.856702e-04	k: 1057	n:3930000
KIAA1804   3930000 perm   6825 sec   (576 perm/sec)   p_kst 2.689567e-04   p_cons 2.339186e-03   p_joint 1.201018e-04

Joint ci ratio: 1.798511e-01	ci left: 1.097172e-04	ci right 1.316377e-04	k: 474	n:3940000
Cons ci ratio: 4.077667e-02	ci left: 2.292380e-03	ci right 2.388050e-03	k: 9219	n:3940000
KS ci ratio: 1.203856e-01	ci left: 2.528372e-04	ci right 2.854681e-04	k: 1059	n:3940000
KIAA1804   3940000 perm   6857 sec   (575 perm/sec)   p_kst 2.687817e-04   p_cons 2.339848e-03   p_joint 1.203046e-04

Joint ci ratio: 1.796621e-01	ci left: 1.096812e-04	ci right 1.315690e-04	k: 475	n:3950000
Cons ci ratio: 4.072591e-02	ci left: 2.292339e-03	ci right 2.387886e-03	k: 9242	n:3950000
KS ci ratio: 1.203289e-01	ci left: 2.524426e-04	ci right 2.850062e-04	k: 1060	n:3950000
KIAA1804   3950000 perm   6889 sec   (573 perm/sec)   p_kst 2.683544e-04   p_cons 2.339747e-03   p_joint 1.202532e-04

Joint ci ratio: 1.790985e-01	ci left: 1.101278e-04	ci right 1.320283e-04	k: 478	n:3960000
Cons ci ratio: 4.067754e-02	ci left: 2.292050e-03	ci right 2.387468e-03	k: 9264	n:3960000
KS ci ratio: 1.200463e-01	ci left: 2.530298e-04	ci right 2.855870e-04	k: 1065	n:3960000
KIAA1804   3960000 perm   6922 sec   (572 perm/sec)   p_kst 2.689394e-04   p_cons 2.339394e-03   p_joint 1.207071e-04

Joint ci ratio: 1.789119e-01	ci left: 1.100910e-04	ci right 1.319589e-04	k: 479	n:3970000
Cons ci ratio: 4.063592e-02	ci left: 2.291014e-03	ci right 2.386289e-03	k: 9283	n:3970000
KS ci ratio: 1.199901e-01	ci left: 2.526368e-04	ci right 2.851271e-04	k: 1066	n:3970000
KIAA1804   3970000 perm   6955 sec   (571 perm/sec)   p_kst 2.685139e-04   p_cons 2.338287e-03   p_joint 1.206549e-04

Joint ci ratio: 1.787258e-01	ci left: 1.100544e-04	ci right 1.318898e-04	k: 480	n:3980000
Cons ci ratio: 4.057039e-02	ci left: 2.292718e-03	ci right 2.387907e-03	k: 9313	n:3980000
KS ci ratio: 1.195984e-01	ci left: 2.537081e-04	ci right 2.862222e-04	k: 1073	n:3980000
KIAA1804   3980000 perm   6987 sec   (570 perm/sec)   p_kst 2.695980e-04   p_cons 2.339950e-03   p_joint 1.206030e-04

Joint ci ratio: 1.833593e-01	ci left: 1.040360e-04	ci right 1.252720e-04	k: 456	n:3990000
Cons ci ratio: 4.052909e-02	ci left: 2.291686e-03	ci right 2.386733e-03	k: 9332	n:3990000
KS ci ratio: 1.193763e-01	ci left: 2.540448e-04	ci right 2.865373e-04	k: 1077	n:3990000
KIAA1804   3990000 perm   7019 sec   (568 perm/sec)   p_kst 2.699248e-04   p_cons 2.338847e-03   p_joint 1.142857e-04

Joint ci ratio: 1.833594e-01	ci left: 1.037759e-04	ci right 1.249589e-04	k: 456	n:4000000
Cons ci ratio: 4.047274e-02	ci left: 2.292391e-03	ci right 2.387332e-03	k: 9358	n:4000000
KS ci ratio: 1.192105e-01	ci left: 2.541373e-04	ci right 2.865933e-04	k: 1080	n:4000000
KIAA1804   4000000 perm   7051 sec   (567 perm/sec)   p_kst 2.700000e-04   p_cons 2.339500e-03   p_joint 1.140000e-04

Joint ci ratio: 1.831591e-01	ci left: 1.037551e-04	ci right 1.249081e-04	k: 457	n:4010000
Cons ci ratio: 4.042958e-02	ci left: 2.291611e-03	ci right 2.386416e-03	k: 9378	n:4010000
KS ci ratio: 1.191554e-01	ci left: 2.537455e-04	ci right 2.861354e-04	k: 1081	n:4010000
KIAA1804   4010000 perm   7083 sec   (566 perm/sec)   p_kst 2.695761e-04   p_cons 2.338653e-03   p_joint 1.139651e-04

Joint ci ratio: 1.864451e-01	ci left: 9.970097e-05	ci right 1.204334e-04	k: 441	n:4020000
Cons ci ratio: 4.038010e-02	ci left: 2.291574e-03	ci right 2.386259e-03	k: 9401	n:4020000
KS ci ratio: 1.188264e-01	ci left: 2.545624e-04	ci right 2.869606e-04	k: 1087	n:4020000
KIAA1804   4020000 perm   7115 sec   (565 perm/sec)   p_kst 2.703980e-04   p_cons 2.338557e-03   p_joint 1.097015e-04

Joint ci ratio: 1.864451e-01	ci left: 9.945357e-05	ci right 1.201345e-04	k: 441	n:4030000
Cons ci ratio: 4.034368e-02	ci left: 2.290064e-03	ci right 2.384599e-03	k: 9418	n:4030000
KS ci ratio: 1.187718e-01	ci left: 2.541715e-04	ci right 2.865040e-04	k: 1088	n:4030000
KIAA1804   4030000 perm   7148 sec   (564 perm/sec)   p_kst 2.699752e-04   p_cons 2.336973e-03   p_joint 1.094293e-04

Joint ci ratio: 1.858156e-01	ci left: 9.991538e-05	ci right 1.206143e-04	k: 444	n:4040000
Cons ci ratio: 4.028810e-02	ci left: 2.290766e-03	ci right 2.385197e-03	k: 9444	n:4040000
KS ci ratio: 1.185543e-01	ci left: 2.545031e-04	ci right 2.868143e-04	k: 1092	n:4040000
KIAA1804   4040000 perm   7181 sec   (563 perm/sec)   p_kst 2.702970e-04   p_cons 2.337624e-03   p_joint 1.099010e-04

Joint ci ratio: 1.858156e-01	ci left: 9.966867e-05	ci right 1.203165e-04	k: 444	n:4050000
Cons ci ratio: 4.023062e-02	ci left: 2.291710e-03	ci right 2.386041e-03	k: 9471	n:4050000
KS ci ratio: 1.183919e-01	ci left: 2.545935e-04	ci right 2.868688e-04	k: 1095	n:4050000
KIAA1804   4050000 perm   7214 sec   (561 perm/sec)   p_kst 2.703704e-04   p_cons 2.338519e-03   p_joint 1.096296e-04

Joint ci ratio: 1.851924e-01	ci left: 1.001278e-04	ci right 1.207933e-04	k: 447	n:4060000
Cons ci ratio: 4.017762e-02	ci left: 2.292161e-03	ci right 2.386384e-03	k: 9496	n:4060000
KS ci ratio: 1.179621e-01	ci left: 2.558786e-04	ci right 2.881909e-04	k: 1103	n:4060000
KIAA1804   4060000 perm   7247 sec   (560 perm/sec)   p_kst 2.716749e-04   p_cons 2.338916e-03   p_joint 1.100985e-04

Joint ci ratio: 1.847803e-01	ci left: 1.003504e-04	ci right 1.210107e-04	k: 449	n:4070000
Cons ci ratio: 4.012062e-02	ci left: 2.293096e-03	ci right 2.387221e-03	k: 9523	n:4070000
KS ci ratio: 1.178021e-01	ci left: 2.559653e-04	ci right 2.882416e-04	k: 1106	n:4070000
KIAA1804   4070000 perm   7281 sec   (559 perm/sec)   p_kst 2.717445e-04   p_cons 2.339803e-03   p_joint 1.103194e-04

Joint ci ratio: 1.847804e-01	ci left: 1.001045e-04	ci right 1.207141e-04	k: 449	n:4080000
Cons ci ratio: 4.007226e-02	ci left: 2.293057e-03	ci right 2.387064e-03	k: 9546	n:4080000
KS ci ratio: 1.176959e-01	ci left: 2.558137e-04	ci right 2.880398e-04	k: 1108	n:4080000
KIAA1804   4080000 perm   7315 sec   (558 perm/sec)   p_kst 2.715686e-04   p_cons 2.339706e-03   p_joint 1.100490e-04

Joint ci ratio: 1.845754e-01	ci left: 1.000929e-04	ci right 1.206747e-04	k: 450	n:4090000
Cons ci ratio: 4.002198e-02	ci left: 2.293259e-03	ci right 2.387154e-03	k: 9570	n:4090000
KS ci ratio: 1.174314e-01	ci left: 2.563748e-04	ci right 2.885939e-04	k: 1113	n:4090000
KIAA1804   4090000 perm   7348 sec   (557 perm/sec)   p_kst 2.721271e-04   p_cons 2.339853e-03   p_joint 1.100244e-04

Joint ci ratio: 1.839645e-01	ci left: 1.005467e-04	ci right 1.211458e-04	k: 453	n:4100000
Cons ci ratio: 3.997190e-02	ci left: 2.293461e-03	ci right 2.387244e-03	k: 9594	n:4100000
KS ci ratio: 1.171687e-01	ci left: 2.569332e-04	ci right 2.891453e-04	k: 1118	n:4100000
KIAA1804   4100000 perm   7380 sec   (556 perm/sec)   p_kst 2.726829e-04   p_cons 2.340000e-03   p_joint 1.104878e-04

Joint ci ratio: 1.841675e-01	ci left: 1.000700e-04	ci right 1.205965e-04	k: 452	n:4110000
Cons ci ratio: 3.992408e-02	ci left: 2.293421e-03	ci right 2.387088e-03	k: 9617	n:4110000
KS ci ratio: 1.169078e-01	ci left: 2.574890e-04	ci right 2.896939e-04	k: 1123	n:4110000
KIAA1804   4110000 perm   7413 sec   (554 perm/sec)   p_kst 2.732360e-04   p_cons 2.339903e-03   p_joint 1.099757e-04

Joint ci ratio: 1.839646e-01	ci left: 1.000586e-04	ci right 1.205577e-04	k: 453	n:4120000
Cons ci ratio: 3.989095e-02	ci left: 2.291699e-03	ci right 2.385216e-03	k: 9633	n:4120000
KS ci ratio: 1.168039e-01	ci left: 2.573353e-04	ci right 2.894904e-04	k: 1125	n:4120000
KIAA1804   4120000 perm   7448 sec   (553 perm/sec)   p_kst 2.730583e-04   p_cons 2.338107e-03   p_joint 1.099515e-04

Joint ci ratio: 1.837623e-01	ci left: 1.000474e-04	ci right 1.205191e-04	k: 454	n:4130000
Cons ci ratio: 3.982275e-02	ci left: 2.294061e-03	ci right 2.387510e-03	k: 9666	n:4130000
KS ci ratio: 1.167521e-01	ci left: 2.569472e-04	ci right 2.890387e-04	k: 1126	n:4130000
KIAA1804   4130000 perm   7482 sec   (552 perm/sec)   p_kst 2.726392e-04   p_cons 2.340436e-03   p_joint 1.099274e-04

Joint ci ratio: 1.837623e-01	ci left: 9.980569e-05	ci right 1.202280e-04	k: 454	n:4140000
Cons ci ratio: 3.976107e-02	ci left: 2.295694e-03	ci right 2.389062e-03	k: 9696	n:4140000
KS ci ratio: 1.164425e-01	ci left: 2.577336e-04	ci right 2.898320e-04	k: 1132	n:4140000
KIAA1804   4140000 perm   7515 sec   (551 perm/sec)   p_kst 2.734300e-04   p_cons 2.342029e-03   p_joint 1.096618e-04

Joint ci ratio: 1.837623e-01	ci left: 9.956519e-05	ci right 1.199383e-04	k: 454	n:4150000
Cons ci ratio: 3.971401e-02	ci left: 2.295650e-03	ci right 2.388902e-03	k: 9719	n:4150000
KS ci ratio: 1.163912e-01	ci left: 2.573465e-04	ci right 2.893816e-04	k: 1133	n:4150000
KIAA1804   4150000 perm   7550 sec   (550 perm/sec)   p_kst 2.730120e-04   p_cons 2.341928e-03   p_joint 1.093976e-04

Joint ci ratio: 1.950178e-01	ci left: 8.764692e-05	ci right 1.068103e-04	k: 403	n:4160000
Cons ci ratio: 3.967731e-02	ci left: 2.294415e-03	ci right 2.387530e-03	k: 9737	n:4160000
KS ci ratio: 1.161864e-01	ci left: 2.576614e-04	ci right 2.896755e-04	k: 1137	n:4160000
KIAA1804   4160000 perm   7584 sec   (549 perm/sec)   p_kst 2.733173e-04   p_cons 2.340625e-03   p_joint 9.687500e-05

Joint ci ratio: 1.947769e-01	ci left: 8.766484e-05	ci right 1.068057e-04	k: 404	n:4170000
Cons ci ratio: 3.963257e-02	ci left: 2.294136e-03	ci right 2.387132e-03	k: 9759	n:4170000
KS ci ratio: 1.159828e-01	ci left: 2.579749e-04	ci right 2.899679e-04	k: 1141	n:4170000
KIAA1804   4170000 perm   7618 sec   (547 perm/sec)   p_kst 2.736211e-04   p_cons 2.340288e-03   p_joint 9.688249e-05

Joint ci ratio: 1.942977e-01	ci left: 8.791028e-05	ci right 1.070519e-04	k: 406	n:4180000
Cons ci ratio: 3.959002e-02	ci left: 2.293622e-03	ci right 2.386495e-03	k: 9780	n:4180000
KS ci ratio: 1.157802e-01	ci left: 2.582870e-04	ci right 2.902589e-04	k: 1145	n:4180000
KIAA1804   4180000 perm   7653 sec   (546 perm/sec)   p_kst 2.739234e-04   p_cons 2.339713e-03   p_joint 9.712919e-05

Joint ci ratio: 1.942977e-01	ci left: 8.770047e-05	ci right 1.067964e-04	k: 406	n:4190000
Cons ci ratio: 3.952739e-02	ci left: 2.295474e-03	ci right 2.388271e-03	k: 9811	n:4190000
KS ci ratio: 1.155786e-01	ci left: 2.585976e-04	ci right 2.905484e-04	k: 1149	n:4190000
KIAA1804   4190000 perm   7687 sec   (545 perm/sec)   p_kst 2.742243e-04   p_cons 2.341527e-03   p_joint 9.689737e-05

Joint ci ratio: 1.940595e-01	ci left: 8.771818e-05	ci right 1.067918e-04	k: 407	n:4200000
Cons ci ratio: 3.948115e-02	ci left: 2.295430e-03	ci right 2.388115e-03	k: 9834	n:4200000
KS ci ratio: 1.154282e-01	ci left: 2.586755e-04	ci right 2.905915e-04	k: 1152	n:4200000
KIAA1804   4200000 perm   7720 sec   (544 perm/sec)   p_kst 2.742857e-04   p_cons 2.341429e-03   p_joint 9.690476e-05

Joint ci ratio: 1.938221e-01	ci left: 8.773582e-05	ci right 1.067872e-04	k: 408	n:4210000
Cons ci ratio: 3.943105e-02	ci left: 2.295858e-03	ci right 2.388439e-03	k: 9859	n:4210000
KS ci ratio: 1.151289e-01	ci left: 2.594452e-04	ci right 2.913675e-04	k: 1158	n:4210000
KIAA1804   4210000 perm   7755 sec   (543 perm/sec)   p_kst 2.750594e-04   p_cons 2.341805e-03   p_joint 9.691211e-05

Joint ci ratio: 1.933499e-01	ci left: 8.797888e-05	ci right 1.070310e-04	k: 410	n:4220000
Cons ci ratio: 3.936918e-02	ci left: 2.297691e-03	ci right 2.390198e-03	k: 9890	n:4220000
KS ci ratio: 1.149802e-01	ci left: 2.595208e-04	ci right 2.914084e-04	k: 1161	n:4220000
KIAA1804   4220000 perm   7789 sec   (542 perm/sec)   p_kst 2.751185e-04   p_cons 2.343602e-03   p_joint 9.715640e-05

Joint ci ratio: 1.928812e-01	ci left: 8.822085e-05	ci right 1.072736e-04	k: 412	n:4230000
Cons ci ratio: 3.933144e-02	ci left: 2.296706e-03	ci right 2.389083e-03	k: 9909	n:4230000
KS ci ratio: 1.148814e-01	ci left: 2.593665e-04	ci right 2.912059e-04	k: 1163	n:4230000
KIAA1804   4230000 perm   7824 sec   (541 perm/sec)   p_kst 2.749409e-04   p_cons 2.342553e-03   p_joint 9.739953e-05

Joint ci ratio: 1.924158e-01	ci left: 8.846173e-05	ci right 1.075150e-04	k: 414	n:4240000
Cons ci ratio: 3.927399e-02	ci left: 2.298062e-03	ci right 2.390355e-03	k: 9938	n:4240000
KS ci ratio: 1.145864e-01	ci left: 2.601293e-04	ci right 2.919748e-04	k: 1169	n:4240000
KIAA1804   4240000 perm   7858 sec   (540 perm/sec)   p_kst 2.757075e-04   p_cons 2.343868e-03   p_joint 9.764151e-05

Joint ci ratio: 1.924158e-01	ci left: 8.825359e-05	ci right 1.072621e-04	k: 414	n:4250000
Cons ci ratio: 3.923061e-02	ci left: 2.297781e-03	ci right 2.389958e-03	k: 9960	n:4250000
KS ci ratio: 1.145375e-01	ci left: 2.597458e-04	ci right 2.915298e-04	k: 1170	n:4250000
KIAA1804   4250000 perm   7894 sec   (538 perm/sec)   p_kst 2.752941e-04   p_cons 2.343529e-03   p_joint 9.741176e-05

Joint ci ratio: 1.924158e-01	ci left: 8.804642e-05	ci right 1.070103e-04	k: 414	n:4260000
Cons ci ratio: 3.918343e-02	ci left: 2.297965e-03	ci right 2.390037e-03	k: 9984	n:4260000
KS ci ratio: 1.145375e-01	ci left: 2.591360e-04	ci right 2.908455e-04	k: 1170	n:4260000
KIAA1804   4260000 perm   7928 sec   (537 perm/sec)   p_kst 2.746479e-04   p_cons 2.343662e-03   p_joint 9.718310e-05

Joint ci ratio: 1.921844e-01	ci left: 8.806314e-05	ci right 1.070051e-04	k: 415	n:4270000
Cons ci ratio: 3.914230e-02	ci left: 2.297454e-03	ci right 2.389406e-03	k: 10005	n:4270000
KS ci ratio: 1.142938e-01	ci left: 2.596666e-04	ci right 2.913688e-04	k: 1175	n:4270000
KIAA1804   4270000 perm   7963 sec   (536 perm/sec)   p_kst 2.751756e-04   p_cons 2.343091e-03   p_joint 9.718970e-05

Joint ci ratio: 1.921844e-01	ci left: 8.785738e-05	ci right 1.067551e-04	k: 415	n:4280000
Cons ci ratio: 3.909935e-02	ci left: 2.297176e-03	ci right 2.389014e-03	k: 10027	n:4280000
KS ci ratio: 1.142938e-01	ci left: 2.590599e-04	ci right 2.906880e-04	k: 1175	n:4280000
KIAA1804   4280000 perm   7997 sec   (535 perm/sec)   p_kst 2.745327e-04   p_cons 2.342757e-03   p_joint 9.696262e-05

Joint ci ratio: 1.917241e-01	ci left: 8.809638e-05	ci right 1.069948e-04	k: 417	n:4290000
Cons ci ratio: 3.905264e-02	ci left: 2.297361e-03	ci right 2.389094e-03	k: 10051	n:4290000
KS ci ratio: 1.140516e-01	ci left: 2.595883e-04	ci right 2.912092e-04	k: 1180	n:4290000
KIAA1804   4290000 perm   8031 sec   (534 perm/sec)   p_kst 2.750583e-04   p_cons 2.342890e-03   p_joint 9.720280e-05

Joint ci ratio: 1.914952e-01	ci left: 8.811291e-05	ci right 1.069897e-04	k: 418	n:4300000
Cons ci ratio: 3.903134e-02	ci left: 2.294551e-03	ci right 2.386121e-03	k: 10062	n:4300000
KS ci ratio: 1.139551e-01	ci left: 2.594364e-04	ci right 2.910104e-04	k: 1182	n:4300000
KIAA1804   4300000 perm   8066 sec   (533 perm/sec)   p_kst 2.748837e-04   p_cons 2.340000e-03   p_joint 9.720930e-05

Joint ci ratio: 1.912671e-01	ci left: 8.812938e-05	ci right 1.069846e-04	k: 419	n:4310000
Cons ci ratio: 3.899651e-02	ci left: 2.293363e-03	ci right 2.384802e-03	k: 10080	n:4310000
KS ci ratio: 1.137630e-01	ci left: 2.597361e-04	ci right 2.912896e-04	k: 1186	n:4310000
KIAA1804   4310000 perm   8101 sec   (532 perm/sec)   p_kst 2.751740e-04   p_cons 2.338747e-03   p_joint 9.721578e-05

Joint ci ratio: 1.910398e-01	ci left: 8.814578e-05	ci right 1.069795e-04	k: 420	n:4320000
Cons ci ratio: 3.896563e-02	ci left: 2.291722e-03	ci right 2.383022e-03	k: 10096	n:4320000
KS ci ratio: 1.136672e-01	ci left: 2.595847e-04	ci right 2.910915e-04	k: 1188	n:4320000
KIAA1804   4320000 perm   8135 sec   (531 perm/sec)   p_kst 2.750000e-04   p_cons 2.337037e-03   p_joint 9.722222e-05

Joint ci ratio: 1.924160e-01	ci left: 8.662303e-05	ci right 1.052803e-04	k: 414	n:4330000
Cons ci ratio: 3.892133e-02	ci left: 2.291689e-03	ci right 2.382882e-03	k: 10119	n:4330000
KS ci ratio: 1.134290e-01	ci left: 2.601071e-04	ci right 2.916067e-04	k: 1193	n:4330000
KIAA1804   4330000 perm   8170 sec   (530 perm/sec)   p_kst 2.755196e-04   p_cons 2.336952e-03   p_joint 9.561201e-05

Joint ci ratio: 1.924160e-01	ci left: 8.642343e-05	ci right 1.050378e-04	k: 414	n:4340000
Cons ci ratio: 3.887910e-02	ci left: 2.291428e-03	ci right 2.382509e-03	k: 10141	n:4340000
KS ci ratio: 1.131922e-01	ci left: 2.606272e-04	ci right 2.921195e-04	k: 1198	n:4340000
KIAA1804   4340000 perm   8204 sec   (529 perm/sec)   p_kst 2.760369e-04   p_cons 2.336636e-03   p_joint 9.539171e-05

Joint ci ratio: 1.924160e-01	ci left: 8.622476e-05	ci right 1.047963e-04	k: 414	n:4350000
Cons ci ratio: 3.884275e-02	ci left: 2.290486e-03	ci right 2.381443e-03	k: 10160	n:4350000
KS ci ratio: 1.131450e-01	ci left: 2.602514e-04	ci right 2.916844e-04	k: 1199	n:4350000
KIAA1804   4350000 perm   8239 sec   (528 perm/sec)   p_kst 2.756322e-04   p_cons 2.335632e-03   p_joint 9.517241e-05

Joint ci ratio: 1.924161e-01	ci left: 8.602700e-05	ci right 1.045559e-04	k: 414	n:4360000
Cons ci ratio: 3.881033e-02	ci left: 2.289094e-03	ci right 2.379918e-03	k: 10177	n:4360000
KS ci ratio: 1.130509e-01	ci left: 2.601003e-04	ci right 2.914871e-04	k: 1201	n:4360000
KIAA1804   4360000 perm   8274 sec   (527 perm/sec)   p_kst 2.754587e-04   p_cons 2.334174e-03   p_joint 9.495413e-05

Joint ci ratio: 1.921846e-01	ci left: 8.604795e-05	ci right 1.045565e-04	k: 415	n:4370000
Cons ci ratio: 3.875513e-02	ci left: 2.290428e-03	ci right 2.381172e-03	k: 10206	n:4370000
KS ci ratio: 1.129569e-01	ci left: 2.599498e-04	ci right 2.912907e-04	k: 1203	n:4370000
KIAA1804   4370000 perm   8308 sec   (526 perm/sec)   p_kst 2.752860e-04   p_cons 2.335469e-03   p_joint 9.496568e-05

Joint ci ratio: 1.914953e-01	ci left: 8.650354e-05	ci right 1.050356e-04	k: 418	n:4380000
Cons ci ratio: 3.869638e-02	ci left: 2.292207e-03	ci right 2.382882e-03	k: 10237	n:4380000
KS ci ratio: 1.129101e-01	ci left: 2.595782e-04	ci right 2.908604e-04	k: 1204	n:4380000
KIAA1804   4380000 perm   8345 sec   (525 perm/sec)   p_kst 2.748858e-04   p_cons 2.337215e-03   p_joint 9.543379e-05

Joint ci ratio: 1.908134e-01	ci left: 8.695716e-05	ci right 1.055124e-04	k: 421	n:4390000
Cons ci ratio: 3.864921e-02	ci left: 2.292626e-03	ci right 2.383204e-03	k: 10262	n:4390000
KS ci ratio: 1.125835e-01	ci left: 2.605365e-04	ci right 2.918373e-04	k: 1211	n:4390000
KIAA1804   4390000 perm   8379 sec   (524 perm/sec)   p_kst 2.758542e-04   p_cons 2.337585e-03   p_joint 9.589977e-05

Joint ci ratio: 1.896929e-01	ci left: 8.784178e-05	ci right 1.064630e-04	k: 426	n:4400000
Cons ci ratio: 3.859094e-02	ci left: 2.294393e-03	ci right 2.384901e-03	k: 10293	n:4400000
KS ci ratio: 1.123058e-01	ci left: 2.612696e-04	ci right 2.925760e-04	k: 1217	n:4400000
KIAA1804   4400000 perm   8415 sec   (523 perm/sec)   p_kst 2.765909e-04   p_cons 2.339318e-03   p_joint 9.681818e-05

Joint ci ratio: 1.892502e-01	ci left: 8.807459e-05	ci right 1.066966e-04	k: 428	n:4410000
Cons ci ratio: 3.854977e-02	ci left: 2.294131e-03	ci right 2.384529e-03	k: 10315	n:4410000
KS ci ratio: 1.120302e-01	ci left: 2.619996e-04	ci right 2.933112e-04	k: 1223	n:4410000
KIAA1804   4410000 perm   8451 sec   (522 perm/sec)   p_kst 2.773243e-04   p_cons 2.339002e-03   p_joint 9.705215e-05

Joint ci ratio: 1.890300e-01	ci left: 8.809086e-05	ci right 1.066921e-04	k: 429	n:4420000
Cons ci ratio: 3.850500e-02	ci left: 2.294318e-03	ci right 2.384617e-03	k: 10339	n:4420000
KS ci ratio: 1.119845e-01	ci left: 2.616267e-04	ci right 2.928802e-04	k: 1224	n:4420000
KIAA1804   4420000 perm   8485 sec   (521 perm/sec)   p_kst 2.769231e-04   p_cons 2.339140e-03   p_joint 9.705882e-05

Joint ci ratio: 1.890300e-01	ci left: 8.789201e-05	ci right 1.064513e-04	k: 429	n:4430000
Cons ci ratio: 3.847342e-02	ci left: 2.292939e-03	ci right 2.383108e-03	k: 10356	n:4430000
KS ci ratio: 1.118932e-01	ci left: 2.614749e-04	ci right 2.926832e-04	k: 1226	n:4430000
KIAA1804   4430000 perm   8521 sec   (520 perm/sec)   p_kst 2.767494e-04   p_cons 2.337698e-03   p_joint 9.683973e-05

Joint ci ratio: 1.924162e-01	ci left: 8.447695e-05	ci right 1.026721e-04	k: 414	n:4440000
Cons ci ratio: 3.841223e-02	ci left: 2.295136e-03	ci right 2.385245e-03	k: 10389	n:4440000
KS ci ratio: 1.118932e-01	ci left: 2.608860e-04	ci right 2.920240e-04	k: 1226	n:4440000
KIAA1804   4440000 perm   8557 sec   (519 perm/sec)   p_kst 2.761261e-04   p_cons 2.339865e-03   p_joint 9.324324e-05

Joint ci ratio: 1.919542e-01	ci left: 8.471493e-05	ci right 1.029124e-04	k: 416	n:4450000
Cons ci ratio: 3.836240e-02	ci left: 2.295988e-03	ci right 2.386010e-03	k: 10416	n:4450000
KS ci ratio: 1.115753e-01	ci left: 2.618288e-04	ci right 2.929847e-04	k: 1233	n:4450000
KIAA1804   4450000 perm   8592 sec   (518 perm/sec)   p_kst 2.770787e-04   p_cons 2.340674e-03   p_joint 9.348315e-05

Joint ci ratio: 1.919542e-01	ci left: 8.452499e-05	ci right 1.026816e-04	k: 416	n:4460000
Cons ci ratio: 3.831644e-02	ci left: 2.296391e-03	ci right 2.386320e-03	k: 10441	n:4460000
KS ci ratio: 1.115302e-01	ci left: 2.614597e-04	ci right 2.925583e-04	k: 1234	n:4460000
KIAA1804   4460000 perm   8630 sec   (517 perm/sec)   p_kst 2.766816e-04   p_cons 2.341031e-03   p_joint 9.327354e-05

Joint ci ratio: 1.919543e-01	ci left: 8.433589e-05	ci right 1.024519e-04	k: 416	n:4470000
Cons ci ratio: 3.827065e-02	ci left: 2.296793e-03	ci right 2.386627e-03	k: 10466	n:4470000
KS ci ratio: 1.114851e-01	ci left: 2.610923e-04	ci right 2.921338e-04	k: 1235	n:4470000
KIAA1804   4470000 perm   8665 sec   (516 perm/sec)   p_kst 2.762864e-04   p_cons 2.341387e-03   p_joint 9.306488e-05

Joint ci ratio: 1.917245e-01	ci left: 8.436014e-05	ci right 1.024571e-04	k: 417	n:4480000
Cons ci ratio: 3.823050e-02	ci left: 2.296530e-03	ci right 2.386258e-03	k: 10488	n:4480000
KS ci ratio: 1.112154e-01	ci left: 2.618115e-04	ci right 2.928582e-04	k: 1241	n:4480000
KIAA1804   4480000 perm   8701 sec   (515 perm/sec)   p_kst 2.770089e-04   p_cons 2.341071e-03   p_joint 9.308036e-05

Joint ci ratio: 1.914956e-01	ci left: 8.438429e-05	ci right 1.024623e-04	k: 418	n:4490000
Cons ci ratio: 3.817592e-02	ci left: 2.298033e-03	ci right 2.387688e-03	k: 10518	n:4490000
KS ci ratio: 1.110813e-01	ci left: 2.618780e-04	ci right 2.928927e-04	k: 1244	n:4490000
KIAA1804   4490000 perm   8737 sec   (514 perm/sec)   p_kst 2.770601e-04   p_cons 2.342539e-03   p_joint 9.309577e-05

Joint ci ratio: 1.914956e-01	ci left: 8.419677e-05	ci right 1.022346e-04	k: 418	n:4500000
Cons ci ratio: 3.814150e-02	ci left: 2.297108e-03	ci right 2.386645e-03	k: 10537	n:4500000
KS ci ratio: 1.110814e-01	ci left: 2.612960e-04	ci right 2.922418e-04	k: 1244	n:4500000
KIAA1804   4500000 perm   8772 sec   (513 perm/sec)   p_kst 2.764444e-04   p_cons 2.341556e-03   p_joint 9.288889e-05

Joint ci ratio: 1.910402e-01	ci left: 8.443230e-05	ci right 1.024726e-04	k: 420	n:4510000
Cons ci ratio: 3.809272e-02	ci left: 2.297945e-03	ci right 2.387397e-03	k: 10564	n:4510000
KS ci ratio: 1.109033e-01	ci left: 2.615789e-04	ci right 2.925054e-04	k: 1248	n:4510000
KIAA1804   4510000 perm   8809 sec   (512 perm/sec)   p_kst 2.767184e-04   p_cons 2.342350e-03   p_joint 9.312639e-05

Joint ci ratio: 1.903631e-01	ci left: 8.487754e-05	ci right 1.029413e-04	k: 423	n:4520000
Cons ci ratio: 3.805673e-02	ci left: 2.297243e-03	ci right 2.386582e-03	k: 10584	n:4520000
KS ci ratio: 1.106379e-01	ci left: 2.622909e-04	ci right 2.932224e-04	k: 1254	n:4520000
KIAA1804   4520000 perm   8846 sec   (511 perm/sec)   p_kst 2.774336e-04   p_cons 2.341593e-03   p_joint 9.358407e-05

Joint ci ratio: 1.903631e-01	ci left: 8.469017e-05	ci right 1.027140e-04	k: 423	n:4530000
Cons ci ratio: 3.802444e-02	ci left: 2.296108e-03	ci right 2.385325e-03	k: 10602	n:4530000
KS ci ratio: 1.106379e-01	ci left: 2.617119e-04	ci right 2.925752e-04	k: 1254	n:4530000
KIAA1804   4530000 perm   8882 sec   (510 perm/sec)   p_kst 2.768212e-04   p_cons 2.340397e-03   p_joint 9.337748e-05

Joint ci ratio: 1.903631e-01	ci left: 8.450363e-05	ci right 1.024878e-04	k: 423	n:4540000
Cons ci ratio: 3.798147e-02	ci left: 2.296286e-03	ci right 2.385407e-03	k: 10626	n:4540000
KS ci ratio: 1.106380e-01	ci left: 2.611354e-04	ci right 2.919307e-04	k: 1254	n:4540000
KIAA1804   4540000 perm   8919 sec   (509 perm/sec)   p_kst 2.762115e-04   p_cons 2.340529e-03   p_joint 9.317181e-05

Joint ci ratio: 1.899157e-01	ci left: 8.473654e-05	ci right 1.027230e-04	k: 425	n:4550000
Cons ci ratio: 3.793508e-02	ci left: 2.296900e-03	ci right 2.385933e-03	k: 10652	n:4550000
KS ci ratio: 1.104182e-01	ci left: 2.616300e-04	ci right 2.924184e-04	k: 1259	n:4550000
KIAA1804   4550000 perm   8956 sec   (508 perm/sec)   p_kst 2.767033e-04   p_cons 2.341099e-03   p_joint 9.340659e-05

Joint ci ratio: 1.899157e-01	ci left: 8.455072e-05	ci right 1.024977e-04	k: 425	n:4560000
Cons ci ratio: 3.788709e-02	ci left: 2.297728e-03	ci right 2.386678e-03	k: 10679	n:4560000
KS ci ratio: 1.103307e-01	ci left: 2.614828e-04	ci right 2.922278e-04	k: 1261	n:4560000
KIAA1804   4560000 perm   8994 sec   (507 perm/sec)   p_kst 2.765351e-04   p_cons 2.341886e-03   p_joint 9.320175e-05

Joint ci ratio: 1.896932e-01	ci left: 8.457412e-05	ci right 1.025027e-04	k: 426	n:4570000
Cons ci ratio: 3.785877e-02	ci left: 2.296168e-03	ci right 2.384990e-03	k: 10695	n:4570000
KS ci ratio: 1.101562e-01	ci left: 2.617617e-04	ci right 2.924878e-04	k: 1265	n:4570000
KIAA1804   4570000 perm   9033 sec   (506 perm/sec)   p_kst 2.768053e-04   p_cons 2.340263e-03   p_joint 9.321663e-05

Joint ci ratio: 1.896932e-01	ci left: 8.438946e-05	ci right 1.022789e-04	k: 426	n:4580000
Cons ci ratio: 3.780223e-02	ci left: 2.298075e-03	ci right 2.386835e-03	k: 10727	n:4580000
KS ci ratio: 1.101128e-01	ci left: 2.614025e-04	ci right 2.920735e-04	k: 1266	n:4580000
KIAA1804   4580000 perm   9071 sec   (505 perm/sec)   p_kst 2.764192e-04   p_cons 2.342140e-03   p_joint 9.301310e-05

Joint ci ratio: 1.894715e-01	ci left: 8.441313e-05	ci right 1.022842e-04	k: 427	n:4590000
Cons ci ratio: 3.776353e-02	ci left: 2.297816e-03	ci right 2.386474e-03	k: 10749	n:4590000
KS ci ratio: 1.098961e-01	ci left: 2.618924e-04	ci right 2.925564e-04	k: 1271	n:4590000
KIAA1804   4590000 perm   9110 sec   (504 perm/sec)   p_kst 2.769063e-04   p_cons 2.341830e-03   p_joint 9.302832e-05

Joint ci ratio: 1.892505e-01	ci left: 8.443671e-05	ci right 1.022895e-04	k: 428	n:4600000
Cons ci ratio: 3.772496e-02	ci left: 2.297558e-03	ci right 2.386113e-03	k: 10771	n:4600000
KS ci ratio: 1.098098e-01	ci left: 2.617459e-04	ci right 2.923672e-04	k: 1273	n:4600000
KIAA1804   4600000 perm   9148 sec   (503 perm/sec)   p_kst 2.767391e-04   p_cons 2.341522e-03   p_joint 9.304348e-05

Joint ci ratio: 1.890303e-01	ci left: 8.446020e-05	ci right 1.022948e-04	k: 429	n:4610000
Cons ci ratio: 3.768475e-02	ci left: 2.297517e-03	ci right 2.385974e-03	k: 10794	n:4610000
KS ci ratio: 1.096808e-01	ci left: 2.618110e-04	ci right 2.924016e-04	k: 1276	n:4610000
KIAA1804   4610000 perm   9185 sec   (502 perm/sec)   p_kst 2.767896e-04   p_cons 2.341432e-03   p_joint 9.305857e-05

Joint ci ratio: 1.890304e-01	ci left: 8.427739e-05	ci right 1.020734e-04	k: 429	n:4620000
Cons ci ratio: 3.764816e-02	ci left: 2.297046e-03	ci right 2.385397e-03	k: 10815	n:4620000
KS ci ratio: 1.096379e-01	ci left: 2.614548e-04	ci right 2.919911e-04	k: 1277	n:4620000
KIAA1804   4620000 perm   9223 sec   (501 perm/sec)   p_kst 2.764069e-04   p_cons 2.340909e-03   p_joint 9.285714e-05

Joint ci ratio: 1.890304e-01	ci left: 8.409536e-05	ci right 1.018530e-04	k: 429	n:4630000
Cons ci ratio: 3.759950e-02	ci left: 2.298076e-03	ci right 2.386350e-03	k: 10843	n:4630000
KS ci ratio: 1.094667e-01	ci left: 2.617304e-04	ci right 2.922480e-04	k: 1281	n:4630000
KIAA1804   4630000 perm   9260 sec   (500 perm/sec)   p_kst 2.766739e-04   p_cons 2.341901e-03   p_joint 9.265659e-05

Joint ci ratio: 1.890304e-01	ci left: 8.391412e-05	ci right 1.016335e-04	k: 429	n:4640000
Cons ci ratio: 3.754930e-02	ci left: 2.299314e-03	ci right 2.387515e-03	k: 10872	n:4640000
KS ci ratio: 1.094240e-01	ci left: 2.613759e-04	ci right 2.918396e-04	k: 1282	n:4640000
KIAA1804   4640000 perm   9298 sec   (499 perm/sec)   p_kst 2.762931e-04   p_cons 2.343103e-03   p_joint 9.245690e-05

Joint ci ratio: 1.877251e-01	ci left: 8.496314e-05	ci right 1.027660e-04	k: 435	n:4650000
Cons ci ratio: 3.750965e-02	ci left: 2.299269e-03	ci right 2.387374e-03	k: 10895	n:4650000
KS ci ratio: 1.091267e-01	ci left: 2.622781e-04	ci right 2.927585e-04	k: 1289	n:4650000
KIAA1804   4650000 perm   9335 sec   (498 perm/sec)   p_kst 2.772043e-04   p_cons 2.343011e-03   p_joint 9.354839e-05

Joint ci ratio: 1.875102e-01	ci left: 8.498533e-05	ci right 1.027701e-04	k: 436	n:4660000
Cons ci ratio: 3.746669e-02	ci left: 2.299650e-03	ci right 2.387666e-03	k: 10920	n:4660000
KS ci ratio: 1.089158e-01	ci left: 2.627589e-04	ci right 2.932324e-04	k: 1294	n:4660000
KIAA1804   4660000 perm   9373 sec   (497 perm/sec)   p_kst 2.776824e-04   p_cons 2.343348e-03   p_joint 9.356223e-05

Joint ci ratio: 1.870826e-01	ci left: 8.521153e-05	ci right 1.029984e-04	k: 438	n:4670000
Cons ci ratio: 3.744102e-02	ci left: 2.297907e-03	ci right 2.385795e-03	k: 10935	n:4670000
KS ci ratio: 1.087479e-01	ci left: 2.630295e-04	ci right 2.934844e-04	k: 1298	n:4670000
KIAA1804   4670000 perm   9412 sec   (496 perm/sec)   p_kst 2.779443e-04   p_cons 2.341542e-03   p_joint 9.379015e-05

Joint ci ratio: 1.868699e-01	ci left: 8.523313e-05	ci right 1.030020e-04	k: 439	n:4680000
Cons ci ratio: 3.739316e-02	ci left: 2.298924e-03	ci right 2.386736e-03	k: 10963	n:4680000
KS ci ratio: 1.087061e-01	ci left: 2.626753e-04	ci right 2.930768e-04	k: 1299	n:4680000
KIAA1804   4680000 perm   9450 sec   (495 perm/sec)   p_kst 2.775641e-04   p_cons 2.342521e-03   p_joint 9.380342e-05

Joint ci ratio: 1.866579e-01	ci left: 8.525465e-05	ci right 1.030055e-04	k: 440	n:4690000
Cons ci ratio: 3.735060e-02	ci left: 2.299303e-03	ci right 2.387027e-03	k: 10988	n:4690000
KS ci ratio: 1.085809e-01	ci left: 2.627375e-04	ci right 2.931089e-04	k: 1302	n:4690000
KIAA1804   4690000 perm   9488 sec   (494 perm/sec)   p_kst 2.776119e-04   p_cons 2.342857e-03   p_joint 9.381663e-05

Joint ci ratio: 1.864466e-01	ci left: 8.527609e-05	ci right 1.030090e-04	k: 441	n:4700000
Cons ci ratio: 3.730987e-02	ci left: 2.299470e-03	ci right 2.387102e-03	k: 11012	n:4700000
KS ci ratio: 1.084977e-01	ci left: 2.625925e-04	ci right 2.929223e-04	k: 1304	n:4700000
KIAA1804   4700000 perm   9525 sec   (493 perm/sec)   p_kst 2.774468e-04   p_cons 2.342979e-03   p_joint 9.382979e-05

Joint ci ratio: 1.862360e-01	ci left: 8.529744e-05	ci right 1.030125e-04	k: 442	n:4710000
Cons ci ratio: 3.727606e-02	ci left: 2.298794e-03	ci right 2.386320e-03	k: 11032	n:4710000
KS ci ratio: 1.083732e-01	ci left: 2.626546e-04	ci right 2.929546e-04	k: 1307	n:4710000
KIAA1804   4710000 perm   9563 sec   (493 perm/sec)   p_kst 2.774947e-04   p_cons 2.342251e-03   p_joint 9.384289e-05

Joint ci ratio: 1.862361e-01	ci left: 8.511673e-05	ci right 1.027943e-04	k: 442	n:4720000
Cons ci ratio: 3.725078e-02	ci left: 2.297072e-03	ci right 2.384472e-03	k: 11047	n:4720000
KS ci ratio: 1.083318e-01	ci left: 2.623043e-04	ci right 2.925516e-04	k: 1308	n:4720000
KIAA1804   4720000 perm   9603 sec   (492 perm/sec)   p_kst 2.771186e-04   p_cons 2.340466e-03   p_joint 9.364407e-05

Joint ci ratio: 1.862361e-01	ci left: 8.493678e-05	ci right 1.025770e-04	k: 442	n:4730000
Cons ci ratio: 3.720869e-02	ci left: 2.297452e-03	ci right 2.384766e-03	k: 11072	n:4730000
KS ci ratio: 1.082905e-01	ci left: 2.619554e-04	ci right 2.921502e-04	k: 1309	n:4730000
KIAA1804   4730000 perm   9640 sec   (491 perm/sec)   p_kst 2.767442e-04   p_cons 2.340803e-03   p_joint 9.344609e-05

Joint ci ratio: 1.862361e-01	ci left: 8.475759e-05	ci right 1.023606e-04	k: 442	n:4740000
Cons ci ratio: 3.716843e-02	ci left: 2.297622e-03	ci right 2.384845e-03	k: 11096	n:4740000
KS ci ratio: 1.082492e-01	ci left: 2.616080e-04	ci right 2.917505e-04	k: 1310	n:4740000
KIAA1804   4740000 perm   9678 sec   (490 perm/sec)   p_kst 2.763713e-04   p_cons 2.340928e-03   p_joint 9.324895e-05

Joint ci ratio: 1.862361e-01	ci left: 8.457915e-05	ci right 1.021451e-04	k: 442	n:4750000
Cons ci ratio: 3.711994e-02	ci left: 2.298833e-03	ci right 2.385986e-03	k: 11125	n:4750000
KS ci ratio: 1.080844e-01	ci left: 2.618766e-04	ci right 2.920012e-04	k: 1314	n:4750000
KIAA1804   4750000 perm   9717 sec   (489 perm/sec)   p_kst 2.766316e-04   p_cons 2.342105e-03   p_joint 9.305263e-05

Joint ci ratio: 1.860263e-01	ci left: 8.460176e-05	ci right 1.021503e-04	k: 443	n:4760000
Cons ci ratio: 3.709331e-02	ci left: 2.297334e-03	ci right 2.384366e-03	k: 11141	n:4760000
KS ci ratio: 1.078795e-01	ci left: 2.623485e-04	ci right 2.924665e-04	k: 1319	n:4760000
KIAA1804   4760000 perm   9756 sec   (488 perm/sec)   p_kst 2.771008e-04   p_cons 2.340546e-03   p_joint 9.306723e-05

Joint ci ratio: 1.866580e-01	ci left: 8.382480e-05	ci right 1.012780e-04	k: 440	n:4770000
Cons ci ratio: 3.704012e-02	ci left: 2.299164e-03	ci right 2.386138e-03	k: 11173	n:4770000
KS ci ratio: 1.077979e-01	ci left: 2.622065e-04	ci right 2.922840e-04	k: 1321	n:4770000
KIAA1804   4770000 perm   9794 sec   (487 perm/sec)   p_kst 2.769392e-04   p_cons 2.342348e-03   p_joint 9.224319e-05

Joint ci ratio: 1.862362e-01	ci left: 8.404831e-05	ci right 1.015040e-04	k: 442	n:4780000
Cons ci ratio: 3.701035e-02	ci left: 2.298085e-03	ci right 2.384947e-03	k: 11191	n:4780000
KS ci ratio: 1.076351e-01	ci left: 2.624722e-04	ci right 2.925319e-04	k: 1325	n:4780000
KIAA1804   4780000 perm   9833 sec   (486 perm/sec)   p_kst 2.771967e-04   p_cons 2.341213e-03   p_joint 9.246862e-05

Joint ci ratio: 1.862362e-01	ci left: 8.387285e-05	ci right 1.012921e-04	k: 442	n:4790000
Cons ci ratio: 3.696247e-02	ci left: 2.299285e-03	ci right 2.386078e-03	k: 11220	n:4790000
KS ci ratio: 1.074731e-01	ci left: 2.627369e-04	ci right 2.927787e-04	k: 1329	n:4790000
KIAA1804   4790000 perm   9882 sec   (485 perm/sec)   p_kst 2.774530e-04   p_cons 2.342380e-03   p_joint 9.227557e-05

Joint ci ratio: 1.858172e-01	ci left: 8.409538e-05	ci right 1.015171e-04	k: 444	n:4800000
Cons ci ratio: 3.693452e-02	ci left: 2.298004e-03	ci right 2.384681e-03	k: 11237	n:4800000
KS ci ratio: 1.073521e-01	ci left: 2.627977e-04	ci right 2.928105e-04	k: 1332	n:4800000
KIAA1804   4800000 perm   9921 sec   (484 perm/sec)   p_kst 2.775000e-04   p_cons 2.341042e-03   p_joint 9.250000e-05

Joint ci ratio: 1.856088e-01	ci left: 8.411878e-05	ci right 1.015236e-04	k: 445	n:4810000
Cons ci ratio: 3.690500e-02	ci left: 2.296934e-03	ci right 2.383500e-03	k: 11255	n:4810000
KS ci ratio: 1.071513e-01	ci left: 2.632630e-04	ci right 2.932691e-04	k: 1337	n:4810000
KIAA1804   4810000 perm   9963 sec   (483 perm/sec)   p_kst 2.779626e-04   p_cons 2.339917e-03   p_joint 9.251559e-05

Joint ci ratio: 1.856088e-01	ci left: 8.394426e-05	ci right 1.013130e-04	k: 445	n:4820000
Cons ci ratio: 3.687555e-02	ci left: 2.295869e-03	ci right 2.382324e-03	k: 11273	n:4820000
KS ci ratio: 1.070713e-01	ci left: 2.631206e-04	ci right 2.930867e-04	k: 1339	n:4820000
KIAA1804   4820000 perm   10008 sec   (482 perm/sec)   p_kst 2.778008e-04   p_cons 2.338797e-03   p_joint 9.232365e-05

Joint ci ratio: 1.856088e-01	ci left: 8.377046e-05	ci right 1.011032e-04	k: 445	n:4830000
Cons ci ratio: 3.682819e-02	ci left: 2.297064e-03	ci right 2.383451e-03	k: 11302	n:4830000
KS ci ratio: 1.069119e-01	ci left: 2.633818e-04	ci right 2.933302e-04	k: 1343	n:4830000
KIAA1804   4830000 perm   10056 sec   (480 perm/sec)   p_kst 2.780538e-04   p_cons 2.339959e-03   p_joint 9.213251e-05

Joint ci ratio: 1.851940e-01	ci left: 8.399142e-05	ci right 1.013267e-04	k: 447	n:4840000
Cons ci ratio: 3.678102e-02	ci left: 2.298255e-03	ci right 2.384574e-03	k: 11331	n:4840000
KS ci ratio: 1.068721e-01	ci left: 2.630387e-04	ci right 2.929363e-04	k: 1344	n:4840000
KIAA1804   4840000 perm   10097 sec   (479 perm/sec)   p_kst 2.776860e-04   p_cons 2.341116e-03   p_joint 9.235537e-05

Joint ci ratio: 1.851940e-01	ci left: 8.381825e-05	ci right 1.011178e-04	k: 447	n:4850000
Cons ci ratio: 3.673888e-02	ci left: 2.298828e-03	ci right 2.385067e-03	k: 11357	n:4850000
KS ci ratio: 1.066740e-01	ci left: 2.634998e-04	ci right 2.933908e-04	k: 1349	n:4850000
KIAA1804   4850000 perm   10136 sec   (478 perm/sec)   p_kst 2.781443e-04   p_cons 2.341649e-03   p_joint 9.216495e-05

Joint ci ratio: 1.847820e-01	ci left: 8.403825e-05	ci right 1.013403e-04	k: 449	n:4860000
Cons ci ratio: 3.669690e-02	ci left: 2.299398e-03	ci right 2.385558e-03	k: 11383	n:4860000
KS ci ratio: 1.064770e-01	ci left: 2.639590e-04	ci right 2.938433e-04	k: 1354	n:4860000
KIAA1804   4860000 perm   10175 sec   (478 perm/sec)   p_kst 2.786008e-04   p_cons 2.342181e-03   p_joint 9.238683e-05

Joint ci ratio: 1.847820e-01	ci left: 8.386568e-05	ci right 1.011322e-04	k: 449	n:4870000
Cons ci ratio: 3.665505e-02	ci left: 2.299967e-03	ci right 2.386048e-03	k: 11409	n:4870000
KS ci ratio: 1.063593e-01	ci left: 2.640166e-04	ci right 2.938723e-04	k: 1357	n:4870000
KIAA1804   4870000 perm   10215 sec   (477 perm/sec)   p_kst 2.786448e-04   p_cons 2.342710e-03   p_joint 9.219713e-05

Joint ci ratio: 1.843727e-01	ci left: 8.408473e-05	ci right 1.013537e-04	k: 451	n:4880000
Cons ci ratio: 3.660854e-02	ci left: 2.301142e-03	ci right 2.387155e-03	k: 11438	n:4880000
KS ci ratio: 1.062811e-01	ci left: 2.638745e-04	ci right 2.936909e-04	k: 1359	n:4880000
KIAA1804   4880000 perm   10256 sec   (476 perm/sec)   p_kst 2.784836e-04   p_cons 2.343852e-03   p_joint 9.241803e-05

Joint ci ratio: 1.839662e-01	ci left: 8.430292e-05	ci right 1.015743e-04	k: 453	n:4890000
Cons ci ratio: 3.658139e-02	ci left: 2.299881e-03	ci right 2.385782e-03	k: 11455	n:4890000
KS ci ratio: 1.062421e-01	ci left: 2.635340e-04	ci right 2.933002e-04	k: 1360	n:4890000
KIAA1804   4890000 perm   10296 sec   (475 perm/sec)   p_kst 2.781186e-04   p_cons 2.342536e-03   p_joint 9.263804e-05

Joint ci ratio: 1.868703e-01	ci left: 8.140632e-05	ci right 9.837740e-05	k: 439	n:4900000
Cons ci ratio: 3.655271e-02	ci left: 2.298827e-03	ci right 2.384620e-03	k: 11473	n:4900000
KS ci ratio: 1.061252e-01	ci left: 2.635921e-04	ci right 2.933301e-04	k: 1363	n:4900000
KIAA1804   4900000 perm   10336 sec   (474 perm/sec)   p_kst 2.781633e-04   p_cons 2.341429e-03   p_joint 8.959184e-05

Joint ci ratio: 1.866583e-01	ci left: 8.143467e-05	ci right 9.839021e-05	k: 440	n:4910000
Cons ci ratio: 3.652727e-02	ci left: 2.297374e-03	ci right 2.383052e-03	k: 11489	n:4910000
KS ci ratio: 1.061252e-01	ci left: 2.630553e-04	ci right 2.927327e-04	k: 1363	n:4910000
KIAA1804   4910000 perm   10377 sec   (473 perm/sec)   p_kst 2.775967e-04   p_cons 2.339919e-03   p_joint 8.961303e-05

Joint ci ratio: 1.866583e-01	ci left: 8.126915e-05	ci right 9.819023e-05	k: 440	n:4920000
Cons ci ratio: 3.649236e-02	ci left: 2.297135e-03	ci right 2.382721e-03	k: 11511	n:4920000
KS ci ratio: 1.060475e-01	ci left: 2.629163e-04	ci right 2.925550e-04	k: 1365	n:4920000
KIAA1804   4920000 perm   10420 sec   (472 perm/sec)   p_kst 2.774390e-04   p_cons 2.339634e-03   p_joint 8.943089e-05

Joint ci ratio: 1.866583e-01	ci left: 8.110431e-05	ci right 9.799106e-05	k: 440	n:4930000
Cons ci ratio: 3.646230e-02	ci left: 2.296294e-03	ci right 2.381777e-03	k: 11530	n:4930000
KS ci ratio: 1.059699e-01	ci left: 2.627780e-04	ci right 2.923780e-04	k: 1367	n:4930000
KIAA1804   4930000 perm   10463 sec   (471 perm/sec)   p_kst 2.772819e-04   p_cons 2.338742e-03   p_joint 8.924949e-05

Joint ci ratio: 1.866583e-01	ci left: 8.094013e-05	ci right 9.779270e-05	k: 440	n:4940000
Cons ci ratio: 3.641809e-02	ci left: 2.297262e-03	ci right 2.382675e-03	k: 11558	n:4940000
KS ci ratio: 1.059700e-01	ci left: 2.622460e-04	ci right 2.917862e-04	k: 1367	n:4940000
KIAA1804   4940000 perm   10507 sec   (470 perm/sec)   p_kst 2.767206e-04   p_cons 2.339676e-03   p_joint 8.906883e-05

Joint ci ratio: 1.862365e-01	ci left: 8.116179e-05	ci right 9.801802e-05	k: 442	n:4950000
Cons ci ratio: 3.637719e-02	ci left: 2.297826e-03	ci right 2.383162e-03	k: 11584	n:4950000
KS ci ratio: 1.058154e-01	ci left: 2.625029e-04	ci right 2.920262e-04	k: 1371	n:4950000
KIAA1804   4950000 perm   10549 sec   (469 perm/sec)   p_kst 2.769697e-04   p_cons 2.340202e-03   p_joint 8.929293e-05

Joint ci ratio: 1.862365e-01	ci left: 8.099816e-05	ci right 9.782040e-05	k: 442	n:4960000
Cons ci ratio: 3.633800e-02	ci left: 2.298188e-03	ci right 2.383443e-03	k: 11609	n:4960000
KS ci ratio: 1.057383e-01	ci left: 2.623662e-04	ci right 2.918513e-04	k: 1373	n:4960000
KIAA1804   4960000 perm   10590 sec   (468 perm/sec)   p_kst 2.768145e-04   p_cons 2.340524e-03   p_joint 8.911290e-05

Joint ci ratio: 1.849879e-01	ci left: 8.198634e-05	ci right 9.888685e-05	k: 448	n:4970000
Cons ci ratio: 3.629893e-02	ci left: 2.298548e-03	ci right 2.383723e-03	k: 11634	n:4970000
KS ci ratio: 1.054318e-01	ci left: 2.634055e-04	ci right 2.929162e-04	k: 1381	n:4970000
KIAA1804   4970000 perm   10635 sec   (467 perm/sec)   p_kst 2.778672e-04   p_cons 2.340845e-03   p_joint 9.014085e-05

Joint ci ratio: 1.847822e-01	ci left: 8.201322e-05	ci right 9.889837e-05	k: 449	n:4980000
Cons ci ratio: 3.626467e-02	ci left: 2.298311e-03	ci right 2.383394e-03	k: 11656	n:4980000
KS ci ratio: 1.053175e-01	ci left: 2.634631e-04	ci right 2.929463e-04	k: 1384	n:4980000
KIAA1804   4980000 perm   10677 sec   (466 perm/sec)   p_kst 2.779116e-04   p_cons 2.340562e-03   p_joint 9.016064e-05

Joint ci ratio: 1.845772e-01	ci left: 8.204000e-05	ci right 9.890983e-05	k: 450	n:4990000
Cons ci ratio: 3.621341e-02	ci left: 2.300258e-03	ci right 2.385291e-03	k: 11689	n:4990000
KS ci ratio: 1.051658e-01	ci left: 2.637156e-04	ci right 2.931820e-04	k: 1388	n:4990000
KIAA1804   4990000 perm   10717 sec   (466 perm/sec)   p_kst 2.781563e-04   p_cons 2.342485e-03   p_joint 9.018036e-05

Joint ci ratio: 1.843729e-01	ci left: 8.206669e-05	ci right 9.892123e-05	k: 451	n:5000000
Cons ci ratio: 4.048223e-02	ci left: 1.833904e-03	ci right 1.909875e-03	k: 9358	n:5000000
KS ci ratio: 1.050147e-01	ci left: 2.639672e-04	ci right 2.934166e-04	k: 1392	n:5000000
KIAA1804   5000000 perm   10758 sec   (465 perm/sec)   p_kst 2.784000e-04   p_cons 1.871600e-03   p_joint 9.020000e-05

Outputting figure to mutsig2_images.part000000000091/KIAA1804.18_3151_5000000_0.0002784_0.0018716_9.02e-05.png
                gene_name: KIAA1804
               theta_stop: 0.18 
                    nperm: 5000000 
                     p_ks: 0.00028 
        ci_ks_bounds_left: 0.00026 
       ci_ks_bounds_right: 0.00029 
                   p_cons: 0.0019 
      ci_cons_bounds_left: 0.0018 
     ci_cons_bounds_right: 0.0019 
                  p_joint: 9.02e-05 
     ci_joint_bounds_left: 8.21e-05 
    ci_joint_bounds_right: 9.89e-05 

Current progress: 4 percent done.
KIAA1486
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.513363e-02	ci left: 4.201686e-01	ci right 4.396723e-01	k: 4299	n:10000
Cons ci ratio: 6.528325e-03	ci left: 9.697378e-01	ci right 9.761827e-01	k: 9731	n:10000
KS ci ratio: 6.705486e-02	ci left: 2.460841e-01	ci right 2.632590e-01	k: 2546	n:10000
KIAA1486   10000 perm   2 sec   (4422 perm/sec)   p_kst 2.546000e-01   p_cons 9.731000e-01   p_joint 4.299000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1486.16_1982_10000_0.2546_0.9731_0.4299.png
                gene_name: KIAA1486
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 5 percent done.
KIAA2022
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.606481e-02	ci left: 6.842576e-01	ci right 7.024297e-01	k: 6934	n:10000
Cons ci ratio: 4.862636e-02	ci left: 3.842059e-01	ci right 4.034560e-01	k: 3938	n:10000
KS ci ratio: 2.442025e-02	ci left: 7.114903e-01	ci right 7.291812e-01	k: 7204	n:10000
KIAA2022   10000 perm   2 sec   (4239 perm/sec)   p_kst 7.204000e-01   p_cons 3.938000e-01   p_joint 6.934000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA2022.16_4563_10000_0.7204_0.3938_0.6934.png
                gene_name: KIAA2022
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 6 percent done.
KIF20B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.983582e-02	ci left: 2.912258e-01	ci right 3.092906e-01	k: 3002	n:10000
Cons ci ratio: 3.893634e-02	ci left: 4.934506e-01	ci right 5.131474e-01	k: 5033	n:10000
KS ci ratio: 7.441696e-02	ci left: 2.090529e-01	ci right 2.253122e-01	k: 2171	n:10000
KIF20B   10000 perm   2 sec   (4020 perm/sec)   p_kst 2.171000e-01   p_cons 5.033000e-01   p_joint 3.002000e-01

Outputting figure to mutsig2_images.part000000000091/KIF20B.16_5471_10000_0.2171_0.5033_0.3002.png
                gene_name: KIF20B
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 8 percent done.
KIAA1429
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.083070e-02	ci left: 1.826474e-01	ci right 1.981334e-01	k: 1903	n:10000
Cons ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
KS ci ratio: 5.005077e-02	ci left: 3.705722e-01	ci right 3.896977e-01	k: 3801	n:10000
KIAA1429   10000 perm   3 sec   (3877 perm/sec)   p_kst 3.801000e-01   p_cons 9.500000e-02   p_joint 1.903000e-01

Joint ci ratio: 5.982064e-02	ci left: 1.714362e-01	ci right 1.820579e-01	k: 3534	n:20000
Cons ci ratio: 8.452258e-02	ci left: 9.298115e-02	ci right 1.012364e-01	k: 1941	n:20000
KS ci ratio: 3.551525e-02	ci left: 3.717712e-01	ci right 3.852641e-01	k: 7570	n:20000
KIAA1429   20000 perm   6 sec   (3580 perm/sec)   p_kst 3.785000e-01   p_cons 9.705000e-02   p_joint 1.767000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1429.14_5589_20000_0.3785_0.09705_0.1767.png
                gene_name: KIAA1429
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 9 percent done.
KIF16B
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.199653e-02	ci left: 5.904206e-01	ci right 6.097211e-01	k: 6001	n:10000
Cons ci ratio: 4.325118e-02	ci left: 4.411130e-01	ci right 4.607156e-01	k: 4509	n:10000
KS ci ratio: 5.114064e-02	ci left: 3.605262e-01	ci right 3.795496e-01	k: 3700	n:10000
KIF16B   10000 perm   2 sec   (4565 perm/sec)   p_kst 3.700000e-01   p_cons 4.509000e-01   p_joint 6.001000e-01

Outputting figure to mutsig2_images.part000000000091/KIF16B.13_4058_10000_0.37_0.4509_0.6001.png
                gene_name: KIF16B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 10 percent done.
KIAA2026
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.323762e-02	ci left: 5.719593e-01	ci right 5.913931e-01	k: 5817	n:10000
KS ci ratio: 1.195230e-02	ci left: 9.093624e-01	ci right 9.203945e-01	k: 9150	n:10000
KIAA2026   10000 perm   2 sec   (4078 perm/sec)   p_kst 9.150000e-01   p_cons 5.817000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIAA2026.13_6344_10000_0.915_0.5817_1.png
                gene_name: KIAA2026
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
KIF13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.630055e-02	ci left: 3.172115e-01	ci right 3.356897e-01	k: 3264	n:10000
Cons ci ratio: 1.164983e-01	ci left: 9.574517e-02	ci right 1.076880e-01	k: 1016	n:10000
KS ci ratio: 1.705275e-02	ci left: 8.335820e-01	ci right 8.480189e-01	k: 8409	n:10000
KIF13A   10000 perm   2 sec   (4033 perm/sec)   p_kst 8.409000e-01   p_cons 1.016000e-01   p_joint 3.264000e-01

Joint ci ratio: 4.620989e-02	ci left: 2.584464e-01	ci right 2.707221e-01	k: 5291	n:20000
Cons ci ratio: 8.173122e-02	ci left: 9.891852e-02	ci right 1.073972e-01	k: 2062	n:20000
KS ci ratio: 1.207325e-02	ci left: 8.354018e-01	ci right 8.455990e-01	k: 16811	n:20000
KIF13A   20000 perm   5 sec   (3690 perm/sec)   p_kst 8.405500e-01   p_cons 1.031000e-01   p_joint 2.645500e-01

Outputting figure to mutsig2_images.part000000000091/KIF13A.13_5599_20000_0.84055_0.1031_0.26455.png
                gene_name: KIF13A
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 13 percent done.
KIAA2018
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.339994e-02	ci left: 4.394169e-01	ci right 4.590127e-01	k: 4492	n:10000
Cons ci ratio: 3.450369e-02	ci left: 5.536120e-01	ci right 5.731511e-01	k: 5634	n:10000
KS ci ratio: 5.646737e-02	ci left: 3.159213e-01	ci right 3.343806e-01	k: 3251	n:10000
KIAA2018   10000 perm   3 sec   (3964 perm/sec)   p_kst 3.251000e-01   p_cons 5.634000e-01   p_joint 4.492000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA2018.12_6758_10000_0.3251_0.5634_0.4492.png
                gene_name: KIAA2018
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 14 percent done.
KIF14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.319447e-01	ci left: 7.572512e-02	ci right 8.652038e-02	k: 810	n:10000
Cons ci ratio: 1.237387e-01	ci left: 8.552985e-02	ci right 9.690958e-02	k: 911	n:10000
KS ci ratio: 1.291907e-01	ci left: 7.882909e-02	ci right 8.981448e-02	k: 842	n:10000
KIF14   10000 perm   2 sec   (4317 perm/sec)   p_kst 8.420000e-02   p_cons 9.110000e-02   p_joint 8.100000e-02

Joint ci ratio: 7.481318e-02	ci left: 1.161662e-01	ci right 1.252444e-01	k: 2413	n:20000
Cons ci ratio: 8.835364e-02	ci left: 8.562761e-02	ci right 9.359217e-02	k: 1791	n:20000
KS ci ratio: 8.967923e-02	ci left: 8.327621e-02	ci right 9.114429e-02	k: 1743	n:20000
KIF14   20000 perm   6 sec   (3626 perm/sec)   p_kst 8.715000e-02   p_cons 8.955000e-02   p_joint 1.206500e-01

Outputting figure to mutsig2_images.part000000000091/KIF14.12_5063_20000_0.08715_0.08955_0.12065.png
                gene_name: KIF14
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 15 percent done.
KIF21A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.087703e-02	ci left: 2.840908e-01	ci right 3.020299e-01	k: 2930	n:10000
Cons ci ratio: 8.764072e-02	ci left: 1.593447e-01	ci right 1.740500e-01	k: 1666	n:10000
KS ci ratio: 5.176048e-02	ci left: 3.549581e-01	ci right 3.739210e-01	k: 3644	n:10000
KIF21A   10000 perm   3 sec   (3947 perm/sec)   p_kst 3.644000e-01   p_cons 1.666000e-01   p_joint 2.930000e-01

Outputting figure to mutsig2_images.part000000000091/KIF21A.12_5177_10000_0.3644_0.1666_0.293.png
                gene_name: KIF21A
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 16 percent done.
KIF2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.545351e-02	ci left: 6.943394e-01	ci right 7.123420e-01	k: 7034	n:10000
Cons ci ratio: 1.198297e-02	ci left: 9.089508e-01	ci right 9.200063e-01	k: 9146	n:10000
KS ci ratio: 3.451070e-02	ci left: 5.535118e-01	ci right 5.730513e-01	k: 5633	n:10000
KIF2B   10000 perm   2 sec   (5266 perm/sec)   p_kst 5.633000e-01   p_cons 9.146000e-01   p_joint 7.034000e-01

Outputting figure to mutsig2_images.part000000000091/KIF2B.11_2026_10000_0.5633_0.9146_0.7034.png
                gene_name: KIF2B
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 18 percent done.
KIAA1377
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.658476e-02	ci left: 5.245646e-01	ci right 5.442154e-01	k: 5344	n:10000
Cons ci ratio: 3.159811e-02	ci left: 5.964436e-01	ci right 6.156946e-01	k: 6061	n:10000
KS ci ratio: 4.603814e-02	ci left: 4.105002e-01	ci right 4.299463e-01	k: 4202	n:10000
KIAA1377   10000 perm   2 sec   (4684 perm/sec)   p_kst 4.202000e-01   p_cons 6.061000e-01   p_joint 5.344000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1377.10_3398_10000_0.4202_0.6061_0.5344.png
                gene_name: KIAA1377
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 19 percent done.
KIAA1462
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.031596e-02	ci left: 9.303005e-01	ci right 9.400441e-01	k: 9353	n:10000
Cons ci ratio: 1.760380e-02	ci left: 8.247294e-01	ci right 8.394766e-01	k: 8322	n:10000
KS ci ratio: 1.834860e-02	ci left: 8.126320e-01	ci right 8.277809e-01	k: 8203	n:10000
KIAA1462   10000 perm   2 sec   (4239 perm/sec)   p_kst 8.203000e-01   p_cons 8.322000e-01   p_joint 9.353000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1462.10_4092_10000_0.8203_0.8322_0.9353.png
                gene_name: KIAA1462
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 20 percent done.
KIAA1549
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.686127e-02	ci left: 8.366363e-01	ci right 8.509628e-01	k: 8439	n:10000
KS ci ratio: 8.467404e-03	ci left: 9.512738e-01	ci right 9.594583e-01	k: 9555	n:10000
KIAA1549   10000 perm   2 sec   (4353 perm/sec)   p_kst 9.555000e-01   p_cons 8.439000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIAA1549.10_5933_10000_0.9555_0.8439_1.png
                gene_name: KIAA1549
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
KIF13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.357377e-02	ci left: 3.392554e-01	ci right 3.580328e-01	k: 3486	n:10000
Cons ci ratio: 7.419881e-02	ci left: 2.100392e-01	ci right 2.263253e-01	k: 2181	n:10000
KS ci ratio: 6.905540e-02	ci left: 2.352124e-01	ci right 2.521372e-01	k: 2436	n:10000
KIF13B   10000 perm   2 sec   (4118 perm/sec)   p_kst 2.436000e-01   p_cons 2.181000e-01   p_joint 3.486000e-01

Outputting figure to mutsig2_images.part000000000091/KIF13B.10_5641_10000_0.2436_0.2181_0.3486.png
                gene_name: KIF13B
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 23 percent done.
KIF4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.385488e-02	ci left: 8.826795e-01	ci right 8.950929e-01	k: 8890	n:10000
Cons ci ratio: 4.117193e-02	ci left: 4.655704e-01	ci right 4.852439e-01	k: 4754	n:10000
KS ci ratio: 2.561827e-02	ci left: 6.916168e-01	ci right 7.096662e-01	k: 7007	n:10000
KIF4B   10000 perm   2 sec   (5028 perm/sec)   p_kst 7.007000e-01   p_cons 4.754000e-01   p_joint 8.890000e-01

Outputting figure to mutsig2_images.part000000000091/KIF4B.10_3709_10000_0.7007_0.4754_0.889.png
                gene_name: KIF4B
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 24 percent done.
KIF5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.226699e-02	ci left: 3.504847e-01	ci right 3.693970e-01	k: 3599	n:10000
Cons ci ratio: 2.205851e-02	ci left: 7.509985e-01	ci right 7.678501e-01	k: 7595	n:10000
KS ci ratio: 6.705486e-02	ci left: 2.460841e-01	ci right 2.632590e-01	k: 2546	n:10000
KIF5A   10000 perm   2 sec   (5269 perm/sec)   p_kst 2.546000e-01   p_cons 7.595000e-01   p_joint 3.599000e-01

Outputting figure to mutsig2_images.part000000000091/KIF5A.10_3211_10000_0.2546_0.7595_0.3599.png
                gene_name: KIF5A
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 25 percent done.
KIF5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.789100e-02	ci left: 3.914738e-01	ci right 4.107839e-01	k: 4011	n:10000
KS ci ratio: 1.432748e-02	ci left: 8.757201e-01	ci right 8.884564e-01	k: 8822	n:10000
KIF5B   10000 perm   2 sec   (4911 perm/sec)   p_kst 8.822000e-01   p_cons 4.011000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF5B.10_2992_10000_0.8822_0.4011_1.png
                gene_name: KIF5B
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
KIDINS220
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.092792e-02	ci left: 7.699268e-01	ci right 7.863109e-01	k: 7782	n:10000
Cons ci ratio: 4.686983e-02	ci left: 4.018319e-01	ci right 4.212197e-01	k: 4115	n:10000
KS ci ratio: 3.173059e-02	ci left: 5.944357e-01	ci right 6.137036e-01	k: 6041	n:10000
KIDINS220   10000 perm   2 sec   (4362 perm/sec)   p_kst 6.041000e-01   p_cons 4.115000e-01   p_joint 7.782000e-01

Outputting figure to mutsig2_images.part000000000091/KIDINS220.9_5432_10000_0.6041_0.4115_0.7782.png
                gene_name: KIDINS220
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 28 percent done.
KIAA1432
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.217355e-02	ci left: 9.063796e-01	ci right 9.175790e-01	k: 9121	n:10000
Cons ci ratio: 1.267511e-02	ci left: 8.994953e-01	ci right 9.110674e-01	k: 9054	n:10000
KS ci ratio: 1.893089e-02	ci left: 8.030849e-01	ci right 8.185336e-01	k: 8109	n:10000
KIAA1432   10000 perm   2 sec   (4445 perm/sec)   p_kst 8.109000e-01   p_cons 9.054000e-01   p_joint 9.121000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1432.7_4209_10000_0.8109_0.9054_0.9121.png
                gene_name: KIAA1432
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 29 percent done.
KIAA1467
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.330158e-02	ci left: 7.301724e-01	ci right 7.474883e-01	k: 7389	n:10000
Cons ci ratio: 2.520369e-02	ci left: 6.984744e-01	ci right 7.164046e-01	k: 7075	n:10000
KS ci ratio: 3.094692e-02	ci left: 6.063849e-01	ci right 6.255475e-01	k: 6160	n:10000
KIAA1467   10000 perm   2 sec   (5644 perm/sec)   p_kst 6.160000e-01   p_cons 7.075000e-01   p_joint 7.389000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1467.7_1921_10000_0.616_0.7075_0.7389.png
                gene_name: KIAA1467
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 30 percent done.
KIAA1797
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.478410e-02	ci left: 2.592386e-01	ci right 2.766968e-01	k: 2679	n:10000
Cons ci ratio: 2.693242e-02	ci left: 6.700507e-01	ci right 6.884448e-01	k: 6793	n:10000
KS ci ratio: 8.609581e-02	ci left: 1.642567e-01	ci right 1.791350e-01	k: 1716	n:10000
KIAA1797   10000 perm   2 sec   (4417 perm/sec)   p_kst 1.716000e-01   p_cons 6.793000e-01   p_joint 2.679000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1797.7_5578_10000_0.1716_0.6793_0.2679.png
                gene_name: KIAA1797
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 32 percent done.
KIF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.336799e-02	ci left: 7.290610e-01	ci right 7.464003e-01	k: 7378	n:10000
Cons ci ratio: 3.859523e-02	ci left: 4.978503e-01	ci right 5.175452e-01	k: 5077	n:10000
KS ci ratio: 3.869571e-02	ci left: 4.965503e-01	ci right 5.162460e-01	k: 5064	n:10000
KIF11   10000 perm   2 sec   (5136 perm/sec)   p_kst 5.064000e-01   p_cons 5.077000e-01   p_joint 7.378000e-01

Outputting figure to mutsig2_images.part000000000091/KIF11.7_3259_10000_0.5064_0.5077_0.7378.png
                gene_name: KIF11
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 33 percent done.
KIF1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.037421e-02	ci left: 6.152251e-01	ci right 6.343022e-01	k: 6248	n:10000
Cons ci ratio: 7.404691e-02	ci left: 2.107297e-01	ci right 2.270344e-01	k: 2188	n:10000
KS ci ratio: 2.436572e-02	ci left: 7.123987e-01	ci right 7.300722e-01	k: 7213	n:10000
KIF1B   10000 perm   2 sec   (4292 perm/sec)   p_kst 7.213000e-01   p_cons 2.188000e-01   p_joint 6.248000e-01

Outputting figure to mutsig2_images.part000000000091/KIF1B.7_6986_10000_0.7213_0.2188_0.6248.png
                gene_name: KIF1B
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 34 percent done.
KIF21B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.797809e-03	ci left: 9.969128e-01	ci right 9.987779e-01	k: 9980	n:10000
KS ci ratio: 2.464460e-02	ci left: 7.077562e-01	ci right 7.255175e-01	k: 7167	n:10000
KIF21B   10000 perm   2 sec   (4844 perm/sec)   p_kst 7.167000e-01   p_cons 9.980000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF21B.7_5011_10000_0.7167_0.998_1.png
                gene_name: KIF21B
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
KIF26B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.870215e-02	ci left: 2.992559e-01	ci right 3.174558e-01	k: 3083	n:10000
Cons ci ratio: 5.512284e-03	ci left: 9.778092e-01	ci right 9.833058e-01	k: 9807	n:10000
KS ci ratio: 1.008704e-01	ci left: 1.245431e-01	ci right 1.378726e-01	k: 1311	n:10000
KIF26B   10000 perm   2 sec   (4512 perm/sec)   p_kst 1.311000e-01   p_cons 9.807000e-01   p_joint 3.083000e-01

Joint ci ratio: 5.254407e-02	ci left: 2.119475e-01	ci right 2.234347e-01	k: 4353	n:20000
Cons ci ratio: 3.969387e-03	ci left: 9.779111e-01	ci right 9.818476e-01	k: 19599	n:20000
KS ci ratio: 7.159459e-02	ci left: 1.256636e-01	ci right 1.350442e-01	k: 2606	n:20000
KIF26B   20000 perm   5 sec   (4086 perm/sec)   p_kst 1.303000e-01   p_cons 9.799500e-01   p_joint 2.176500e-01

Outputting figure to mutsig2_images.part000000000091/KIF26B.7_6387_20000_0.1303_0.97995_0.21765.png
                gene_name: KIF26B
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 37 percent done.
KIF27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.512443e-02	ci left: 4.202683e-01	ci right 4.397725e-01	k: 4300	n:10000
Cons ci ratio: 7.281323e-02	ci left: 2.164518e-01	ci right 2.329089e-01	k: 2246	n:10000
KS ci ratio: 3.897529e-02	ci left: 4.929507e-01	ci right 5.126477e-01	k: 5028	n:10000
KIF27   10000 perm   2 sec   (4513 perm/sec)   p_kst 5.028000e-01   p_cons 2.246000e-01   p_joint 4.300000e-01

Outputting figure to mutsig2_images.part000000000091/KIF27.7_4274_10000_0.5028_0.2246_0.43.png
                gene_name: KIF27
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 38 percent done.
KIF3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.036150e-01	ci left: 1.186757e-01	ci right 1.317435e-01	k: 1251	n:10000
Cons ci ratio: 2.355655e-03	ci left: 9.951357e-01	ci right 9.975609e-01	k: 9965	n:10000
KS ci ratio: 2.011077e-01	ci left: 3.291000e-02	ci right 4.036307e-02	k: 365	n:10000
KIF3A   10000 perm   2 sec   (5548 perm/sec)   p_kst 3.650000e-02   p_cons 9.965000e-01   p_joint 1.251000e-01

Joint ci ratio: 1.213959e-01	ci left: 4.653451e-02	ci right 5.259730e-02	k: 990	n:20000
Cons ci ratio: 1.642525e-03	ci left: 9.956358e-01	ci right 9.973147e-01	k: 19931	n:20000
KS ci ratio: 1.402313e-01	ci left: 3.495774e-02	ci right 4.027778e-02	k: 751	n:20000
KIF3A   20000 perm   4 sec   (4937 perm/sec)   p_kst 3.755000e-02   p_cons 9.965500e-01   p_joint 4.950000e-02

Joint ci ratio: 8.820587e-02	ci left: 5.903581e-02	ci right 6.451610e-02	k: 1852	n:30000
Cons ci ratio: 1.347566e-03	ci left: 9.957646e-01	ci right 9.971365e-01	k: 29895	n:30000
KS ci ratio: 1.123935e-01	ci left: 3.677252e-02	ci right 4.118400e-02	k: 1168	n:30000
KIF3A   30000 perm   7 sec   (4481 perm/sec)   p_kst 3.893333e-02   p_cons 9.965000e-01   p_joint 6.173333e-02

Joint ci ratio: 7.315461e-02	ci left: 6.451968e-02	ci right 6.944341e-02	k: 2678	n:40000
Cons ci ratio: 1.173936e-03	ci left: 9.958171e-01	ci right 9.970091e-01	k: 39858	n:40000
KS ci ratio: 9.700195e-02	ci left: 3.731916e-02	ci right 4.114810e-02	k: 1568	n:40000
KIF3A   40000 perm   9 sec   (4439 perm/sec)   p_kst 3.920000e-02   p_cons 9.964500e-01   p_joint 6.695000e-02

Outputting figure to mutsig2_images.part000000000091/KIF3A.7_2168_40000_0.0392_0.99645_0.06695.png
                gene_name: KIF3A
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.069 

Current progress: 39 percent done.
KIF5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.962099e-02	ci left: 6.269838e-01	ci right 6.459367e-01	k: 6365	n:10000
Cons ci ratio: 4.061489e-02	ci left: 4.723628e-01	ci right 4.920476e-01	k: 4822	n:10000
KS ci ratio: 4.375241e-02	ci left: 4.354264e-01	ci right 4.550056e-01	k: 4452	n:10000
KIF5C   10000 perm   2 sec   (5346 perm/sec)   p_kst 4.452000e-01   p_cons 4.822000e-01   p_joint 6.365000e-01

Outputting figure to mutsig2_images.part000000000091/KIF5C.7_2898_10000_0.4452_0.4822_0.6365.png
                gene_name: KIF5C
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 41 percent done.
KIF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.744616e-02	ci left: 5.129549e-01	ci right 5.326318e-01	k: 5228	n:10000
Cons ci ratio: 2.385736e-02	ci left: 7.208794e-01	ci right 7.383866e-01	k: 7297	n:10000
KS ci ratio: 5.584290e-02	ci left: 3.207846e-01	ci right 3.393145e-01	k: 3300	n:10000
KIF9   10000 perm   2 sec   (5423 perm/sec)   p_kst 3.300000e-01   p_cons 7.297000e-01   p_joint 5.228000e-01

Outputting figure to mutsig2_images.part000000000091/KIF9.7_2453_10000_0.33_0.7297_0.5228.png
                gene_name: KIF9
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 42 percent done.
KIAA1430
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.906704e-02	ci left: 3.799258e-01	ci right 3.991386e-01	k: 3895	n:10000
Cons ci ratio: 9.825754e-02	ci left: 1.305129e-01	ci right 1.440991e-01	k: 1372	n:10000
KS ci ratio: 3.206990e-02	ci left: 5.893165e-01	ci right 6.086258e-01	k: 5990	n:10000
KIAA1430   10000 perm   2 sec   (5921 perm/sec)   p_kst 5.990000e-01   p_cons 1.372000e-01   p_joint 3.895000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1430.6_1615_10000_0.599_0.1372_0.3895.png
                gene_name: KIAA1430
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 43 percent done.
KIAA1958
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.107083e-01	ci left: 1.051997e-01	ci right 1.176277e-01	k: 1113	n:10000
Cons ci ratio: 5.921521e-02	ci left: 2.955875e-01	ci right 3.137265e-01	k: 3046	n:10000
KS ci ratio: 1.384600e-01	ci left: 6.904079e-02	ci right 7.940888e-02	k: 741	n:10000
KIAA1958   10000 perm   2 sec   (5967 perm/sec)   p_kst 7.410000e-02   p_cons 3.046000e-01   p_joint 1.113000e-01

Joint ci ratio: 8.903753e-02	ci left: 8.440281e-02	ci right 9.231734e-02	k: 1766	n:20000
Cons ci ratio: 4.178776e-02	ci left: 2.991199e-01	ci right 3.119367e-01	k: 6110	n:20000
KS ci ratio: 9.951067e-02	ci left: 6.840617e-02	ci right 7.561886e-02	k: 1439	n:20000
KIAA1958   20000 perm   4 sec   (5317 perm/sec)   p_kst 7.195000e-02   p_cons 3.055000e-01   p_joint 8.830000e-02

Outputting figure to mutsig2_images.part000000000091/KIAA1958.6_2163_20000_0.07195_0.3055_0.0883.png
                gene_name: KIAA1958
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.092 

Current progress: 44 percent done.
KIAA1967
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.956251e-01	ci left: 3.481398e-02	ci right 4.245779e-02	k: 385	n:10000
Cons ci ratio: 8.088317e-02	ci left: 1.824506e-01	ci right 1.979303e-01	k: 1901	n:10000
KS ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
KIAA1967   10000 perm   2 sec   (5095 perm/sec)   p_kst 4.380000e-02   p_cons 1.901000e-01   p_joint 3.850000e-02

Joint ci ratio: 8.371335e-02	ci left: 9.464903e-02	ci right 1.029680e-01	k: 1975	n:20000
Cons ci ratio: 5.847869e-02	ci left: 1.780579e-01	ci right 1.888343e-01	k: 3668	n:20000
KS ci ratio: 1.265892e-01	ci left: 4.284699e-02	ci right 4.868599e-02	k: 914	n:20000
KIAA1967   20000 perm   4 sec   (4466 perm/sec)   p_kst 4.570000e-02   p_cons 1.834000e-01   p_joint 9.875000e-02

Joint ci ratio: 8.326194e-02	ci left: 6.592830e-02	ci right 7.168887e-02	k: 2063	n:30000
Cons ci ratio: 4.673415e-02	ci left: 1.855082e-01	ci right 1.944186e-01	k: 5698	n:30000
KS ci ratio: 1.027927e-01	ci left: 4.385197e-02	ci right 4.863640e-02	k: 1386	n:30000
KIAA1967   30000 perm   7 sec   (4296 perm/sec)   p_kst 4.620000e-02   p_cons 1.899333e-01   p_joint 6.876667e-02

Joint ci ratio: 6.796658e-02	ci left: 7.415963e-02	ci right 7.940200e-02	k: 3070	n:40000
Cons ci ratio: 4.058408e-02	ci left: 1.852727e-01	ci right 1.929725e-01	k: 7564	n:40000
KS ci ratio: 8.590928e-02	ci left: 4.734561e-02	ci right 5.162009e-02	k: 1978	n:40000
KIAA1967   40000 perm   10 sec   (4170 perm/sec)   p_kst 4.945000e-02   p_cons 1.891000e-01   p_joint 7.675000e-02

Outputting figure to mutsig2_images.part000000000091/KIAA1967.6_2852_40000_0.04945_0.1891_0.07675.png
                gene_name: KIAA1967
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.079 

Current progress: 46 percent done.
KIF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.889140e-02	ci left: 1.901300e-01	ci right 2.058463e-01	k: 1979	n:10000
Cons ci ratio: 3.250553e-02	ci left: 5.827935e-01	ci right 6.021526e-01	k: 5925	n:10000
KS ci ratio: 1.048634e-01	ci left: 1.161346e-01	ci right 1.290861e-01	k: 1225	n:10000
KIF17   10000 perm   2 sec   (5388 perm/sec)   p_kst 1.225000e-01   p_cons 5.925000e-01   p_joint 1.979000e-01

Joint ci ratio: 5.548850e-02	ci left: 1.941290e-01	ci right 2.052585e-01	k: 3993	n:20000
Cons ci ratio: 2.270405e-02	ci left: 5.916172e-01	ci right 6.052541e-01	k: 11969	n:20000
KS ci ratio: 7.576212e-02	ci left: 1.135597e-01	ci right 1.225517e-01	k: 2360	n:20000
KIF17   20000 perm   4 sec   (4847 perm/sec)   p_kst 1.180000e-01   p_cons 5.984500e-01   p_joint 1.996500e-01

Outputting figure to mutsig2_images.part000000000091/KIF17.6_3150_20000_0.118_0.59845_0.19965.png
                gene_name: KIF17
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 47 percent done.
KIF18A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.362898e-01	ci left: 7.117069e-02	ci right 8.167765e-02	k: 763	n:10000
Cons ci ratio: 1.618587e-01	ci left: 5.090025e-02	ci right 5.996092e-02	k: 553	n:10000
KS ci ratio: 5.702521e-02	ci left: 3.116545e-01	ci right 3.300500e-01	k: 3208	n:10000
KIF18A   10000 perm   2 sec   (5298 perm/sec)   p_kst 3.208000e-01   p_cons 5.530000e-02   p_joint 7.630000e-02

Joint ci ratio: 9.506608e-02	ci left: 7.461336e-02	ci right 8.210977e-02	k: 1566	n:20000
Cons ci ratio: 1.121678e-01	ci left: 5.431319e-02	ci right 6.081619e-02	k: 1150	n:20000
KS ci ratio: 3.906662e-02	ci left: 3.282590e-01	ci right 3.413890e-01	k: 6696	n:20000
KIF18A   20000 perm   4 sec   (4801 perm/sec)   p_kst 3.348000e-01   p_cons 5.750000e-02   p_joint 7.830000e-02

Joint ci ratio: 7.750545e-02	ci left: 7.551352e-02	ci right 8.163506e-02	k: 2356	n:30000
Cons ci ratio: 9.333306e-02	ci left: 5.293567e-02	ci right 5.815082e-02	k: 1665	n:30000
KS ci ratio: 3.182272e-02	ci left: 3.305217e-01	ci right 3.412434e-01	k: 10076	n:30000
KIF18A   30000 perm   6 sec   (4629 perm/sec)   p_kst 3.358667e-01   p_cons 5.550000e-02   p_joint 7.853333e-02

Outputting figure to mutsig2_images.part000000000091/KIF18A.6_2761_30000_0.33587_0.0555_0.078533.png
                gene_name: KIF18A
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.082 

Current progress: 48 percent done.
KIF1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.830905e-02	ci left: 1.572823e-01	ci right 1.719136e-01	k: 1645	n:10000
Cons ci ratio: 3.258635e-02	ci left: 5.815895e-01	ci right 6.009573e-01	k: 5913	n:10000
KS ci ratio: 1.336559e-01	ci left: 7.388330e-02	ci right 8.456334e-02	k: 791	n:10000
KIF1A   10000 perm   2 sec   (5001 perm/sec)   p_kst 7.910000e-02   p_cons 5.913000e-01   p_joint 1.645000e-01

Joint ci ratio: 6.025590e-02	ci left: 1.693613e-01	ci right 1.799334e-01	k: 3492	n:20000
Cons ci ratio: 2.378515e-02	ci left: 5.690152e-01	ci right 5.827628e-01	k: 11518	n:20000
KS ci ratio: 9.688928e-02	ci left: 7.197315e-02	ci right 7.935078e-02	k: 1512	n:20000
KIF1A   20000 perm   5 sec   (4290 perm/sec)   p_kst 7.560000e-02   p_cons 5.759000e-01   p_joint 1.746000e-01

Outputting figure to mutsig2_images.part000000000091/KIF1A.6_5257_20000_0.0756_0.5759_0.1746.png
                gene_name: KIF1A
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 49 percent done.
KIAA1383
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.412626e-02	ci left: 4.312370e-01	ci right 4.507974e-01	k: 4410	n:10000
Cons ci ratio: 1.899257e-02	ci left: 8.020697e-01	ci right 8.175494e-01	k: 8099	n:10000
KS ci ratio: 5.727471e-02	ci left: 3.097694e-01	ci right 3.281362e-01	k: 3189	n:10000
KIAA1383   10000 perm   2 sec   (5270 perm/sec)   p_kst 3.189000e-01   p_cons 8.099000e-01   p_joint 4.410000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1383.5_3148_10000_0.3189_0.8099_0.441.png
                gene_name: KIAA1383
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 51 percent done.
KIAA1407
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.967515e-02	ci left: 4.840539e-01	ci right 5.037497e-01	k: 4939	n:10000
Cons ci ratio: 4.209943e-02	ci left: 4.544868e-01	ci right 4.741340e-01	k: 4643	n:10000
KS ci ratio: 4.055801e-02	ci left: 4.730621e-01	ci right 4.927479e-01	k: 4829	n:10000
KIAA1407   10000 perm   2 sec   (4937 perm/sec)   p_kst 4.829000e-01   p_cons 4.643000e-01   p_joint 4.939000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1407.5_2879_10000_0.4829_0.4643_0.4939.png
                gene_name: KIAA1407
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 52 percent done.
KIAA1468
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.231794e-02	ci left: 2.745815e-01	ci right 2.923448e-01	k: 2834	n:10000
Cons ci ratio: 1.241134e-01	ci left: 8.504395e-02	ci right 9.639578e-02	k: 906	n:10000
KS ci ratio: 4.708334e-02	ci left: 3.996404e-01	ci right 4.190125e-01	k: 4093	n:10000
KIAA1468   10000 perm   2 sec   (4959 perm/sec)   p_kst 4.093000e-01   p_cons 9.060000e-02   p_joint 2.834000e-01

Joint ci ratio: 4.831883e-02	ci left: 2.415806e-01	ci right 2.535928e-01	k: 4951	n:20000
Cons ci ratio: 8.951065e-02	ci left: 8.357009e-02	ci right 9.145032e-02	k: 1749	n:20000
KS ci ratio: 3.322732e-02	ci left: 4.034714e-01	ci right 4.171547e-01	k: 8206	n:20000
KIAA1468   20000 perm   4 sec   (4537 perm/sec)   p_kst 4.103000e-01   p_cons 8.745000e-02   p_joint 2.475500e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1468.5_3767_20000_0.4103_0.08745_0.24755.png
                gene_name: KIAA1468
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 53 percent done.
KIAA1598
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.528745e-02	ci left: 1.669102e-01	ci right 1.818800e-01	k: 1743	n:10000
Cons ci ratio: 2.878780e-02	ci left: 6.401566e-01	ci right 6.589562e-01	k: 6496	n:10000
KS ci ratio: 1.382589e-01	ci left: 6.923436e-02	ci right 7.961519e-02	k: 743	n:10000
KIAA1598   10000 perm   2 sec   (5439 perm/sec)   p_kst 7.430000e-02   p_cons 6.496000e-01   p_joint 1.743000e-01

Joint ci ratio: 7.162618e-02	ci left: 1.255651e-01	ci right 1.349427e-01	k: 2604	n:20000
Cons ci ratio: 2.028319e-02	ci left: 6.445985e-01	ci right 6.578575e-01	k: 13025	n:20000
KS ci ratio: 9.651026e-02	ci left: 7.251086e-02	ci right 7.991291e-02	k: 1523	n:20000
KIAA1598   20000 perm   4 sec   (4842 perm/sec)   p_kst 7.615000e-02   p_cons 6.512500e-01   p_joint 1.302000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1598.5_1964_20000_0.07615_0.65125_0.1302.png
                gene_name: KIAA1598
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 54 percent done.
KIAA1683
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.660544e-02	ci left: 6.753898e-01	ci right 6.937026e-01	k: 6846	n:10000
Cons ci ratio: 4.142864e-02	ci left: 4.624745e-01	ci right 4.821416e-01	k: 4723	n:10000
KS ci ratio: 5.545381e-02	ci left: 3.238620e-01	ci right 3.424353e-01	k: 3331	n:10000
KIAA1683   10000 perm   2 sec   (5155 perm/sec)   p_kst 3.331000e-01   p_cons 4.723000e-01   p_joint 6.846000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1683.5_4116_10000_0.3331_0.4723_0.6846.png
                gene_name: KIAA1683
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 56 percent done.
KIAA1755
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.680497e-01	ci left: 4.724933e-02	ci right 5.601420e-02	k: 515	n:10000
Cons ci ratio: 3.231538e-01	ci left: 1.215729e-02	ci right 1.693165e-02	k: 144	n:10000
KS ci ratio: 3.158488e-02	ci left: 5.966444e-01	ci right 6.158937e-01	k: 6063	n:10000
KIAA1755   10000 perm   2 sec   (4857 perm/sec)   p_kst 6.063000e-01   p_cons 1.440000e-02   p_joint 5.150000e-02

Joint ci ratio: 1.107954e-01	ci left: 5.562767e-02	ci right 6.220129e-02	k: 1177	n:20000
Cons ci ratio: 2.273197e-01	ci left: 1.298353e-02	ci right 1.635973e-02	k: 292	n:20000
KS ci ratio: 2.238421e-02	ci left: 5.984358e-01	ci right 6.120335e-01	k: 12105	n:20000
KIAA1755   20000 perm   5 sec   (4404 perm/sec)   p_kst 6.052500e-01   p_cons 1.460000e-02   p_joint 5.885000e-02

Joint ci ratio: 9.875369e-02	ci left: 4.743057e-02	ci right 5.239039e-02	k: 1496	n:30000
Cons ci ratio: 1.887932e-01	ci left: 1.282815e-02	ci right 1.553381e-02	k: 424	n:30000
KS ci ratio: 1.823173e-02	ci left: 6.008783e-01	ci right 6.119677e-01	k: 18193	n:30000
KIAA1755   30000 perm   7 sec   (4226 perm/sec)   p_kst 6.064333e-01   p_cons 1.413333e-02   p_joint 4.986667e-02

Joint ci ratio: 7.913324e-02	ci left: 5.550820e-02	ci right 6.010626e-02	k: 2311	n:40000
Cons ci ratio: 1.611604e-01	ci left: 1.339939e-02	ci right 1.577185e-02	k: 582	n:40000
KS ci ratio: 1.514208e-02	ci left: 6.214623e-01	ci right 6.309694e-01	k: 25049	n:40000
KIAA1755   40000 perm   10 sec   (4104 perm/sec)   p_kst 6.262250e-01   p_cons 1.455000e-02   p_joint 5.777500e-02

Joint ci ratio: 7.726376e-02	ci left: 4.706520e-02	ci right 5.086739e-02	k: 2447	n:50000
Cons ci ratio: 1.443225e-01	ci left: 1.348975e-02	ci right 1.560716e-02	k: 726	n:50000
KS ci ratio: 1.354601e-02	ci left: 6.218819e-01	ci right 6.303834e-01	k: 31307	n:50000
KIAA1755   50000 perm   13 sec   (3968 perm/sec)   p_kst 6.261400e-01   p_cons 1.452000e-02   p_joint 4.894000e-02

Joint ci ratio: 7.041357e-02	ci left: 4.738457e-02	ci right 5.085921e-02	k: 2946	n:60000
Cons ci ratio: 1.311695e-01	ci left: 1.370384e-02	ci right 1.564352e-02	k: 879	n:60000
KS ci ratio: 1.233474e-02	ci left: 6.234334e-01	ci right 6.311877e-01	k: 37639	n:60000
KIAA1755   60000 perm   16 sec   (3851 perm/sec)   p_kst 6.273167e-01   p_cons 1.465000e-02   p_joint 4.910000e-02

Joint ci ratio: 5.175064e-02	ci left: 7.379328e-02	ci right 7.772768e-02	k: 5302	n:70000
Cons ci ratio: 1.211802e-01	ci left: 1.383533e-02	ci right 1.563379e-02	k: 1030	n:70000
KS ci ratio: 1.142891e-02	ci left: 6.233479e-01	ci right 6.305273e-01	k: 43886	n:70000
KIAA1755   70000 perm   18 sec   (3787 perm/sec)   p_kst 6.269429e-01   p_cons 1.471429e-02   p_joint 7.574286e-02

Joint ci ratio: 4.988222e-02	ci left: 6.987213e-02	ci right 7.345901e-02	k: 5732	n:80000
Cons ci ratio: 1.136619e-01	ci left: 1.381667e-02	ci right 1.549379e-02	k: 1171	n:80000
KS ci ratio: 1.069805e-02	ci left: 6.232624e-01	ci right 6.299784e-01	k: 50130	n:80000
KIAA1755   80000 perm   22 sec   (3697 perm/sec)   p_kst 6.266250e-01   p_cons 1.463750e-02   p_joint 7.165000e-02

Joint ci ratio: 4.924342e-02	ci left: 6.415571e-02	ci right 6.740568e-02	k: 5919	n:90000
Cons ci ratio: 1.078064e-01	ci left: 1.369670e-02	ci right 1.526816e-02	k: 1302	n:90000
KS ci ratio: 1.009899e-02	ci left: 6.228626e-01	ci right 6.291959e-01	k: 56343	n:90000
KIAA1755   90000 perm   25 sec   (3647 perm/sec)   p_kst 6.260333e-01   p_cons 1.446667e-02   p_joint 6.576667e-02

Joint ci ratio: 4.916540e-02	ci left: 5.829861e-02	ci right 6.124699e-02	k: 5976	n:100000
Cons ci ratio: 1.026264e-01	ci left: 1.364149e-02	ci right 1.512687e-02	k: 1437	n:100000
KS ci ratio: 9.581434e-03	ci left: 6.229924e-01	ci right 6.290003e-01	k: 62600	n:100000
KIAA1755   100000 perm   28 sec   (3597 perm/sec)   p_kst 6.260000e-01   p_cons 1.437000e-02   p_joint 5.976000e-02

Joint ci ratio: 4.815916e-02	ci left: 5.543934e-02	ci right 5.818409e-02	k: 6248	n:110000
Cons ci ratio: 9.825464e-02	ci left: 1.356232e-02	ci right 1.497255e-02	k: 1568	n:110000
KS ci ratio: 9.134128e-03	ci left: 6.232056e-01	ci right 6.289332e-01	k: 68868	n:110000
KIAA1755   110000 perm   31 sec   (3547 perm/sec)   p_kst 6.260727e-01   p_cons 1.425455e-02   p_joint 5.680000e-02

Outputting figure to mutsig2_images.part000000000091/KIAA1755.5_3659_110000_0.62607_0.014255_0.0568.png
                gene_name: KIAA1755
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.058 

Current progress: 57 percent done.
KIF15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.107050e-02	ci left: 9.209006e-01	ci right 9.312496e-01	k: 9262	n:10000
KS ci ratio: 1.305600e-02	ci left: 8.941583e-01	ci right 9.060075e-01	k: 9002	n:10000
KIF15   10000 perm   2 sec   (4881 perm/sec)   p_kst 9.002000e-01   p_cons 9.262000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF15.5_4307_10000_0.9002_0.9262_1.png
                gene_name: KIF15
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
KIF1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.158161e-02	ci left: 2.223737e-01	ci right 2.389835e-01	k: 2306	n:10000
Cons ci ratio: 3.389067e-02	ci left: 5.624330e-01	ci right 5.819249e-01	k: 5722	n:10000
KS ci ratio: 1.191911e-01	ci left: 9.175384e-02	ci right 1.034818e-01	k: 975	n:10000
KIF1C   10000 perm   2 sec   (4957 perm/sec)   p_kst 9.750000e-02   p_cons 5.722000e-01   p_joint 2.306000e-01

Joint ci ratio: 5.709189e-02	ci left: 1.852757e-01	ci right 1.962144e-01	k: 3814	n:20000
Cons ci ratio: 2.384362e-02	ci left: 5.678128e-01	ci right 5.815655e-01	k: 11494	n:20000
KS ci ratio: 8.478879e-02	ci left: 9.244163e-02	ci right 1.006761e-01	k: 1930	n:20000
KIF1C   20000 perm   4 sec   (4488 perm/sec)   p_kst 9.650000e-02   p_cons 5.747000e-01   p_joint 1.907000e-01

Outputting figure to mutsig2_images.part000000000091/KIF1C.5_3396_20000_0.0965_0.5747_0.1907.png
                gene_name: KIF1C
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 59 percent done.
KIF2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.077899e-01	ci left: 1.104696e-01	ci right 1.231546e-01	k: 1167	n:10000
Cons ci ratio: 1.589924e-01	ci left: 5.272798e-02	ci right 6.193202e-02	k: 572	n:10000
KS ci ratio: 7.002437e-02	ci left: 2.301744e-01	ci right 2.469782e-01	k: 2385	n:10000
KIF2C   10000 perm   2 sec   (5775 perm/sec)   p_kst 2.385000e-01   p_cons 5.720000e-02   p_joint 1.167000e-01

Joint ci ratio: 7.109371e-02	ci left: 1.272391e-01	ci right 1.366682e-01	k: 2638	n:20000
Cons ci ratio: 1.124271e-01	ci left: 5.406982e-02	ci right 6.055963e-02	k: 1145	n:20000
KS ci ratio: 4.867154e-02	ci left: 2.389031e-01	ci right 2.508712e-01	k: 4897	n:20000
KIF2C   20000 perm   4 sec   (5177 perm/sec)   p_kst 2.448500e-01   p_cons 5.725000e-02   p_joint 1.319000e-01

Joint ci ratio: 6.164791e-02	ci left: 1.150933e-01	ci right 1.224474e-01	k: 3562	n:30000
Cons ci ratio: 9.202437e-02	ci left: 5.440283e-02	ci right 5.968336e-02	k: 1710	n:30000
KS ci ratio: 3.959752e-02	ci left: 2.413333e-01	ci right 2.511159e-01	k: 7386	n:30000
KIF2C   30000 perm   6 sec   (4768 perm/sec)   p_kst 2.462000e-01   p_cons 5.700000e-02   p_joint 1.187333e-01

Outputting figure to mutsig2_images.part000000000091/KIF2C.5_2262_30000_0.2462_0.057_0.11873.png
                gene_name: KIF2C
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 61 percent done.
KIF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.846546e-02	ci left: 1.300234e-01	ci right 1.435889e-01	k: 1367	n:10000
Cons ci ratio: 1.285909e-02	ci left: 8.969288e-01	ci right 9.086354e-01	k: 9029	n:10000
KS ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
KIF6   10000 perm   2 sec   (5101 perm/sec)   p_kst 4.450000e-02   p_cons 9.029000e-01   p_joint 1.367000e-01

Joint ci ratio: 7.920726e-02	ci left: 1.047622e-01	ci right 1.134519e-01	k: 2181	n:20000
Cons ci ratio: 9.452411e-03	ci left: 8.915340e-01	ci right 9.000506e-01	k: 17917	n:20000
KS ci ratio: 1.271729e-01	ci left: 4.245914e-02	ci right 4.827396e-02	k: 906	n:20000
KIF6   20000 perm   4 sec   (4731 perm/sec)   p_kst 4.530000e-02   p_cons 8.958500e-01   p_joint 1.090500e-01

Joint ci ratio: 5.568474e-02	ci left: 1.378048e-01	ci right 1.457314e-01	k: 4252	n:30000
Cons ci ratio: 7.766344e-03	ci left: 8.911379e-01	ci right 8.981188e-01	k: 26840	n:30000
KS ci ratio: 1.051182e-01	ci left: 4.196671e-02	ci right 4.665539e-02	k: 1328	n:30000
KIF6   30000 perm   8 sec   (3728 perm/sec)   p_kst 4.426667e-02   p_cons 8.946667e-01   p_joint 1.417333e-01

Joint ci ratio: 5.473561e-02	ci left: 1.105306e-01	ci right 1.167756e-01	k: 4545	n:40000
Cons ci ratio: 6.759248e-03	ci left: 8.906637e-01	ci right 8.967290e-01	k: 35749	n:40000
KS ci ratio: 8.776814e-02	ci left: 4.541146e-02	ci right 4.960455e-02	k: 1899	n:40000
KIF6   40000 perm   11 sec   (3640 perm/sec)   p_kst 4.747500e-02   p_cons 8.937250e-01   p_joint 1.136250e-01

Outputting figure to mutsig2_images.part000000000091/KIF6.5_2537_40000_0.047475_0.89372_0.11363.png
                gene_name: KIF6
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 62 percent done.
KIF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.262686e-01	ci left: 8.232386e-02	ci right 9.351756e-02	k: 878	n:10000
Cons ci ratio: 6.656394e-02	ci left: 2.488526e-01	ci right 2.660889e-01	k: 2574	n:10000
KS ci ratio: 1.216940e-01	ci left: 8.825186e-02	ci right 9.978590e-02	k: 939	n:10000
KIF7   10000 perm   3 sec   (3519 perm/sec)   p_kst 9.390000e-02   p_cons 2.574000e-01   p_joint 8.780000e-02

Joint ci ratio: 6.409544e-02	ci left: 1.524766e-01	ci right 1.626232e-01	k: 3150	n:20000
Cons ci ratio: 4.461431e-02	ci left: 2.722454e-01	ci right 2.847190e-01	k: 5569	n:20000
KS ci ratio: 8.615353e-02	ci left: 8.974462e-02	ci right 9.787391e-02	k: 1875	n:20000
KIF7   20000 perm   8 sec   (2629 perm/sec)   p_kst 9.375000e-02   p_cons 2.784500e-01   p_joint 1.575000e-01

Outputting figure to mutsig2_images.part000000000091/KIF7.5_4104_20000_0.09375_0.27845_0.1575.png
                gene_name: KIF7
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 63 percent done.
KIAA1524
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.989034e-02	ci left: 6.227620e-01	ci right 6.417609e-01	k: 6323	n:10000
Cons ci ratio: 3.051687e-02	ci left: 6.130147e-01	ci right 6.321138e-01	k: 6226	n:10000
KS ci ratio: 4.029101e-02	ci left: 4.763591e-01	ci right 4.960489e-01	k: 4862	n:10000
KIAA1524   10000 perm   2 sec   (5210 perm/sec)   p_kst 4.862000e-01   p_cons 6.226000e-01   p_joint 6.323000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1524.4_2802_10000_0.4862_0.6226_0.6323.png
                gene_name: KIAA1524
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 65 percent done.
KIAA1539
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.693762e-02	ci left: 4.011345e-01	ci right 4.205174e-01	k: 4108	n:10000
Cons ci ratio: 7.198729e-02	ci left: 2.203995e-01	ci right 2.369589e-01	k: 2286	n:10000
KS ci ratio: 1.045149e-02	ci left: 9.286459e-01	ci right 9.384997e-01	k: 9337	n:10000
KIAA1539   10000 perm   3 sec   (3269 perm/sec)   p_kst 9.337000e-01   p_cons 2.286000e-01   p_joint 4.108000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1539.4_1645_10000_0.9337_0.2286_0.4108.png
                gene_name: KIAA1539
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 66 percent done.
KIAA1586
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.145532e-01	ci left: 2.882687e-02	ci right 3.584904e-02	k: 322	n:10000
Cons ci ratio: 1.663568e-01	ci left: 4.820949e-02	ci right 5.705342e-02	k: 525	n:10000
KS ci ratio: 1.215513e-01	ci left: 8.844634e-02	ci right 9.999129e-02	k: 941	n:10000
KIAA1586   10000 perm   2 sec   (5488 perm/sec)   p_kst 9.410000e-02   p_cons 5.250000e-02   p_joint 3.220000e-02

Joint ci ratio: 1.273200e-01	ci left: 4.236218e-02	ci right 4.817095e-02	k: 904	n:20000
Cons ci ratio: 1.190142e-01	ci left: 4.838015e-02	ci right 5.455108e-02	k: 1028	n:20000
KS ci ratio: 8.718300e-02	ci left: 8.778382e-02	ci right 9.583530e-02	k: 1835	n:20000
KIAA1586   20000 perm   4 sec   (4966 perm/sec)   p_kst 9.175000e-02   p_cons 5.140000e-02   p_joint 4.520000e-02

Joint ci ratio: 1.024447e-01	ci left: 4.414462e-02	ci right 4.894369e-02	k: 1395	n:30000
Cons ci ratio: 9.134691e-02	ci left: 5.518553e-02	ci right 6.050050e-02	k: 1734	n:30000
KS ci ratio: 7.430191e-02	ci left: 8.173677e-02	ci right 8.807722e-02	k: 2546	n:30000
KIAA1586   30000 perm   6 sec   (4749 perm/sec)   p_kst 8.486667e-02   p_cons 5.780000e-02   p_joint 4.650000e-02

Joint ci ratio: 7.552371e-02	ci left: 6.071197e-02	ci right 6.550170e-02	k: 2523	n:40000
Cons ci ratio: 7.927892e-02	ci left: 5.531193e-02	ci right 5.990256e-02	k: 2303	n:40000
KS ci ratio: 6.431652e-02	ci left: 8.223544e-02	ci right 8.772499e-02	k: 3398	n:40000
KIAA1586   40000 perm   9 sec   (4594 perm/sec)   p_kst 8.495000e-02   p_cons 5.757500e-02   p_joint 6.307500e-02

Outputting figure to mutsig2_images.part000000000091/KIAA1586.4_2380_40000_0.08495_0.057575_0.063075.png
                gene_name: KIAA1586
               theta_stop: 0.079 
                    nperm: 40000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.066 

Current progress: 67 percent done.
KIAA1609
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.232463e-02	ci left: 9.043236e-01	ci right 9.156362e-01	k: 9101	n:10000
Cons ci ratio: 1.573306e-02	ci left: 8.543705e-01	ci right 8.680184e-01	k: 8613	n:10000
KS ci ratio: 2.247489e-02	ci left: 7.440199e-01	ci right 7.610327e-01	k: 7526	n:10000
KIAA1609   10000 perm   2 sec   (6268 perm/sec)   p_kst 7.526000e-01   p_cons 8.613000e-01   p_joint 9.101000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1609.4_1399_10000_0.7526_0.8613_0.9101.png
                gene_name: KIAA1609
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 68 percent done.
KIAA1712
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.208707e-02	ci left: 1.462904e-01	ci right 1.605121e-01	k: 1533	n:10000
Cons ci ratio: 3.811947e-02	ci left: 5.040511e-01	ci right 5.237408e-01	k: 5139	n:10000
KS ci ratio: 1.645486e-01	ci left: 4.926618e-02	ci right 5.819605e-02	k: 536	n:10000
KIAA1712   10000 perm   2 sec   (5973 perm/sec)   p_kst 5.360000e-02   p_cons 5.139000e-01   p_joint 1.533000e-01

Joint ci ratio: 6.478008e-02	ci left: 1.497138e-01	ci right 1.597868e-01	k: 3094	n:20000
Cons ci ratio: 2.647234e-02	ci left: 5.159999e-01	ci right 5.298935e-01	k: 10459	n:20000
KS ci ratio: 1.155061e-01	ci left: 5.129666e-02	ci right 5.763366e-02	k: 1088	n:20000
KIAA1712   20000 perm   4 sec   (5148 perm/sec)   p_kst 5.440000e-02   p_cons 5.229500e-01   p_joint 1.547000e-01

Joint ci ratio: 6.030171e-02	ci left: 1.197311e-01	ci right 1.272087e-01	k: 3703	n:30000
Cons ci ratio: 2.109727e-02	ci left: 5.293695e-01	ci right 5.406904e-01	k: 16051	n:30000
KS ci ratio: 9.345190e-02	ci left: 5.280528e-02	ci right 5.801457e-02	k: 1661	n:30000
KIAA1712   30000 perm   6 sec   (4886 perm/sec)   p_kst 5.536667e-02   p_cons 5.350333e-01   p_joint 1.234333e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1712.4_1331_30000_0.055367_0.53503_0.12343.png
                gene_name: KIAA1712
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 70 percent done.
KIAA1715
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.745679e-01	ci left: 4.379660e-02	ci right 5.226918e-02	k: 479	n:10000
Cons ci ratio: 4.921176e-02	ci left: 3.785325e-01	ci right 3.977327e-01	k: 3881	n:10000
KS ci ratio: 2.313764e-01	ci left: 2.466595e-02	ci right 3.121293e-02	k: 278	n:10000
KIAA1715   10000 perm   2 sec   (6019 perm/sec)   p_kst 2.780000e-02   p_cons 3.881000e-01   p_joint 4.790000e-02

Joint ci ratio: 8.233326e-02	ci left: 9.759325e-02	ci right 1.060229e-01	k: 2035	n:20000
Cons ci ratio: 3.400158e-02	ci left: 3.924028e-01	ci right 4.060265e-01	k: 7984	n:20000
KS ci ratio: 1.587049e-01	ci left: 2.724667e-02	ci right 3.199140e-02	k: 591	n:20000
KIAA1715   20000 perm   4 sec   (5298 perm/sec)   p_kst 2.955000e-02   p_cons 3.992000e-01   p_joint 1.017500e-01

Joint ci ratio: 8.520659e-02	ci left: 6.308525e-02	ci right 6.873250e-02	k: 1976	n:30000
Cons ci ratio: 2.840619e-02	ci left: 3.827462e-01	ci right 3.938088e-01	k: 11648	n:30000
KS ci ratio: 1.335894e-01	ci left: 2.603335e-02	ci right 2.979216e-02	k: 836	n:30000
KIAA1715   30000 perm   6 sec   (5047 perm/sec)   p_kst 2.786667e-02   p_cons 3.882667e-01   p_joint 6.586667e-02

Joint ci ratio: 7.679823e-02	ci left: 5.879678e-02	ci right 6.351717e-02	k: 2445	n:40000
Cons ci ratio: 2.451522e-02	ci left: 3.851409e-01	ci right 3.947250e-01	k: 15597	n:40000
KS ci ratio: 1.151626e-01	ci left: 2.652662e-02	ci right 2.979236e-02	k: 1125	n:40000
KIAA1715   40000 perm   8 sec   (4893 perm/sec)   p_kst 2.812500e-02   p_cons 3.899250e-01   p_joint 6.112500e-02

Joint ci ratio: 7.036653e-02	ci left: 5.637992e-02	ci right 6.051153e-02	k: 2921	n:50000
Cons ci ratio: 2.182006e-02	ci left: 3.879767e-01	ci right 3.965558e-01	k: 19613	n:50000
KS ci ratio: 1.025001e-01	ci left: 2.696141e-02	ci right 2.989368e-02	k: 1420	n:50000
KIAA1715   50000 perm   11 sec   (4757 perm/sec)   p_kst 2.840000e-02   p_cons 3.922600e-01   p_joint 5.842000e-02

Joint ci ratio: 7.171550e-02	ci left: 4.572971e-02	ci right 4.914757e-02	k: 2845	n:60000
Cons ci ratio: 1.940072e-02	ci left: 4.009686e-01	ci right 4.088406e-01	k: 24294	n:60000
KS ci ratio: 9.346236e-02	ci left: 2.715051e-02	ci right 2.982869e-02	k: 1708	n:60000
KIAA1715   60000 perm   13 sec   (4651 perm/sec)   p_kst 2.846667e-02   p_cons 4.049000e-01   p_joint 4.741667e-02

Outputting figure to mutsig2_images.part000000000091/KIAA1715.4_1335_60000_0.028467_0.4049_0.047417.png
                gene_name: KIAA1715
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.049 

Current progress: 71 percent done.
KIF23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.658476e-02	ci left: 5.245646e-01	ci right 5.442154e-01	k: 5344	n:10000
Cons ci ratio: 5.555378e-02	ci left: 3.230678e-01	ci right 3.416300e-01	k: 3323	n:10000
KS ci ratio: 5.776603e-02	ci left: 3.060990e-01	ci right 3.244087e-01	k: 3152	n:10000
KIF23   10000 perm   2 sec   (5467 perm/sec)   p_kst 3.152000e-01   p_cons 3.323000e-01   p_joint 5.344000e-01

Outputting figure to mutsig2_images.part000000000091/KIF23.4_2975_10000_0.3152_0.3323_0.5344.png
                gene_name: KIF23
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 72 percent done.
KIF3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.885079e-02	ci left: 4.945505e-01	ci right 5.142470e-01	k: 5044	n:10000
KS ci ratio: 1.277834e-02	ci left: 8.980579e-01	ci right 9.097056e-01	k: 9040	n:10000
KIF3B   10000 perm   2 sec   (5490 perm/sec)   p_kst 9.040000e-01   p_cons 5.044000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIF3B.4_2276_10000_0.904_0.5044_1.png
                gene_name: KIF3B
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
KIF4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.275781e-03	ci left: 9.795206e-01	ci right 9.847932e-01	k: 9823	n:10000
Cons ci ratio: 1.652095e-02	ci left: 8.420346e-01	ci right 8.561614e-01	k: 8492	n:10000
KS ci ratio: 1.688045e-02	ci left: 8.363308e-01	ci right 8.506684e-01	k: 8436	n:10000
KIF4A   10000 perm   2 sec   (4884 perm/sec)   p_kst 8.436000e-01   p_cons 8.492000e-01   p_joint 9.823000e-01

Outputting figure to mutsig2_images.part000000000091/KIF4A.4_3819_10000_0.8436_0.8492_0.9823.png
                gene_name: KIF4A
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 75 percent done.
KIAA1704
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.315040e-01	ci left: 7.620996e-02	ci right 8.703524e-02	k: 815	n:10000
Cons ci ratio: 3.123971e-01	ci left: 1.307848e-02	ci right 1.800961e-02	k: 154	n:10000
KS ci ratio: 4.613273e-02	ci left: 4.095037e-01	ci right 4.289434e-01	k: 4192	n:10000
KIAA1704   10000 perm   2 sec   (4652 perm/sec)   p_kst 4.192000e-01   p_cons 1.540000e-02   p_joint 8.150000e-02

Joint ci ratio: 7.534660e-02	ci left: 1.146907e-01	ci right 1.237203e-01	k: 2383	n:20000
Cons ci ratio: 2.035806e-01	ci left: 1.634521e-02	ci right 2.009673e-02	k: 363	n:20000
KS ci ratio: 3.276484e-02	ci left: 4.102539e-01	ci right 4.239703e-01	k: 8342	n:20000
KIAA1704   20000 perm   4 sec   (4905 perm/sec)   p_kst 4.171000e-01   p_cons 1.815000e-02   p_joint 1.191500e-01

Joint ci ratio: 6.805948e-02	ci left: 9.616785e-02	ci right 1.029766e-01	k: 2986	n:30000
Cons ci ratio: 1.702378e-01	ci left: 1.588671e-02	ci right 1.887447e-02	k: 520	n:30000
KS ci ratio: 2.670375e-02	ci left: 4.124102e-01	ci right 4.236057e-01	k: 12540	n:30000
KIAA1704   30000 perm   6 sec   (4918 perm/sec)   p_kst 4.180000e-01   p_cons 1.733333e-02   p_joint 9.953333e-02

Joint ci ratio: 5.971601e-02	ci left: 9.433848e-02	ci right 1.001701e-01	k: 3889	n:40000
Cons ci ratio: 1.489287e-01	ci left: 1.575582e-02	ci right 1.831498e-02	k: 680	n:40000
KS ci ratio: 2.318718e-02	ci left: 4.118872e-01	ci right 4.215749e-01	k: 16669	n:40000
KIAA1704   40000 perm   9 sec   (4581 perm/sec)   p_kst 4.167250e-01   p_cons 1.700000e-02   p_joint 9.722500e-02

Joint ci ratio: 6.213157e-02	ci left: 7.144431e-02	ci right 7.604532e-02	k: 3686	n:50000
Cons ci ratio: 1.332261e-01	ci left: 1.588502e-02	ci right 1.817155e-02	k: 850	n:50000
KS ci ratio: 2.077809e-02	ci left: 4.114949e-01	ci right 4.201548e-01	k: 20791	n:50000
KIAA1704   50000 perm   11 sec   (4513 perm/sec)   p_kst 4.158200e-01   p_cons 1.700000e-02   p_joint 7.372000e-02

Joint ci ratio: 6.935578e-02	ci left: 4.879410e-02	ci right 5.231620e-02	k: 3032	n:60000
Cons ci ratio: 1.267129e-01	ci left: 1.470431e-02	ci right 1.670960e-02	k: 941	n:60000
KS ci ratio: 1.892638e-02	ci left: 4.129340e-01	ci right 4.208407e-01	k: 25013	n:60000
KIAA1704   60000 perm   14 sec   (4393 perm/sec)   p_kst 4.168833e-01   p_cons 1.568333e-02   p_joint 5.053333e-02

Joint ci ratio: 5.868848e-02	ci left: 5.815320e-02	ci right 6.168338e-02	k: 4193	n:70000
Cons ci ratio: 1.128090e-01	ci left: 1.599972e-02	ci right 1.792633e-02	k: 1186	n:70000
KS ci ratio: 1.755489e-02	ci left: 4.123308e-01	ci right 4.196476e-01	k: 29119	n:70000
KIAA1704   70000 perm   17 sec   (4064 perm/sec)   p_kst 4.159857e-01   p_cons 1.694286e-02   p_joint 5.990000e-02

Joint ci ratio: 5.795831e-02	ci left: 5.251772e-02	ci right 5.566471e-02	k: 4326	n:80000
Cons ci ratio: 1.067126e-01	ci left: 1.570160e-02	ci right 1.748370e-02	k: 1326	n:80000
KS ci ratio: 1.642701e-02	ci left: 4.123941e-01	ci right 4.192370e-01	k: 33265	n:80000
KIAA1704   80000 perm   22 sec   (3705 perm/sec)   p_kst 4.158125e-01   p_cons 1.657500e-02   p_joint 5.407500e-02

Joint ci ratio: 5.588567e-02	ci left: 5.038293e-02	ci right 5.329049e-02	k: 4664	n:90000
Cons ci ratio: 1.007084e-01	ci left: 1.572114e-02	ci right 1.739911e-02	k: 1489	n:90000
KS ci ratio: 1.546108e-02	ci left: 4.134207e-01	ci right 4.198735e-01	k: 37498	n:90000
KIAA1704   90000 perm   25 sec   (3580 perm/sec)   p_kst 4.166444e-01   p_cons 1.654444e-02   p_joint 5.182222e-02

Joint ci ratio: 5.264573e-02	ci left: 5.114540e-02	ci right 5.392063e-02	k: 5252	n:100000
Cons ci ratio: 9.506145e-02	ci left: 1.592457e-02	ci right 1.752364e-02	k: 1671	n:100000
KS ci ratio: 1.465667e-02	ci left: 4.139515e-01	ci right 4.200734e-01	k: 41701	n:100000
KIAA1704   100000 perm   29 sec   (3447 perm/sec)   p_kst 4.170100e-01   p_cons 1.671000e-02   p_joint 5.252000e-02

Outputting figure to mutsig2_images.part000000000091/KIAA1704.3_1055_100000_0.41701_0.01671_0.05252.png
                gene_name: KIAA1704
               theta_stop: 0.095 
                    nperm: 100000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.054 

Current progress: 76 percent done.
KIAA1751
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.681183e-02	ci left: 4.024296e-01	ci right 4.218216e-01	k: 4121	n:10000
KS ci ratio: 3.466525e-02	ci left: 5.513070e-01	ci right 5.708574e-01	k: 5611	n:10000
KIAA1751   10000 perm   2 sec   (5099 perm/sec)   p_kst 5.611000e-01   p_cons 4.121000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIAA1751.3_2357_10000_0.5611_0.4121_1.png
                gene_name: KIAA1751
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
KIAA1826
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.063989e-02	ci left: 3.651011e-01	ci right 3.841720e-01	k: 3746	n:10000
Cons ci ratio: 2.391178e-02	ci left: 7.199706e-01	ci right 7.374960e-01	k: 7288	n:10000
KS ci ratio: 6.080366e-02	ci left: 2.845862e-01	ci right 3.025342e-01	k: 2935	n:10000
KIAA1826   10000 perm   2 sec   (6006 perm/sec)   p_kst 2.935000e-01   p_cons 7.288000e-01   p_joint 3.746000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1826.3_1046_10000_0.2935_0.7288_0.3746.png
                gene_name: KIAA1826
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 78 percent done.
KIAA1841
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.017574e-03	ci left: 9.875220e-01	ci right 9.915852e-01	k: 9897	n:10000
Cons ci ratio: 3.546029e-02	ci left: 5.400858e-01	ci right 5.596852e-01	k: 5499	n:10000
KS ci ratio: 3.777764e-02	ci left: 5.085527e-01	ci right 5.282366e-01	k: 5184	n:10000
KIAA1841   10000 perm   2 sec   (5700 perm/sec)   p_kst 5.184000e-01   p_cons 5.499000e-01   p_joint 9.897000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1841.3_2337_10000_0.5184_0.5499_0.9897.png
                gene_name: KIAA1841
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 80 percent done.
KIAA1919
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.021878e-02	ci left: 1.515885e-01	ci right 1.660108e-01	k: 1587	n:10000
Cons ci ratio: 1.065542e-01	ci left: 1.128131e-01	ci right 1.256096e-01	k: 1191	n:10000
KS ci ratio: 6.698429e-02	ci left: 2.464796e-01	ci right 2.636633e-01	k: 2550	n:10000
KIAA1919   10000 perm   2 sec   (4750 perm/sec)   p_kst 2.550000e-01   p_cons 1.191000e-01   p_joint 1.587000e-01

Joint ci ratio: 9.210118e-02	ci left: 7.921235e-02	ci right 8.690937e-02	k: 1660	n:20000
Cons ci ratio: 7.570759e-02	ci left: 1.137072e-01	ci right 1.227041e-01	k: 2363	n:20000
KS ci ratio: 4.765379e-02	ci left: 2.467383e-01	ci right 2.588337e-01	k: 5055	n:20000
KIAA1919   20000 perm   5 sec   (4426 perm/sec)   p_kst 2.527500e-01   p_cons 1.181500e-01   p_joint 8.300000e-02

Outputting figure to mutsig2_images.part000000000091/KIAA1919.3_1573_20000_0.25275_0.11815_0.083.png
                gene_name: KIAA1919
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.087 

Current progress: 81 percent done.
KIF20A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.686731e-03	ci left: 9.835003e-01	ci right 9.882104e-01	k: 9860	n:10000
Cons ci ratio: 1.128739e-02	ci left: 9.181162e-01	ci right 9.286356e-01	k: 9235	n:10000
KS ci ratio: 2.500293e-02	ci left: 7.018032e-01	ci right 7.196739e-01	k: 7108	n:10000
KIF20A   10000 perm   2 sec   (5597 perm/sec)   p_kst 7.108000e-01   p_cons 9.235000e-01   p_joint 9.860000e-01

Outputting figure to mutsig2_images.part000000000091/KIF20A.3_2745_10000_0.7108_0.9235_0.986.png
                gene_name: KIF20A
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 82 percent done.
KIF24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.858578e-02	ci left: 6.433756e-01	ci right 6.621354e-01	k: 6528	n:10000
Cons ci ratio: 2.075209e-02	ci left: 7.728643e-01	ci right 7.891717e-01	k: 7811	n:10000
KS ci ratio: 4.116368e-02	ci left: 4.656703e-01	ci right 4.853440e-01	k: 4755	n:10000
KIF24   10000 perm   2 sec   (5052 perm/sec)   p_kst 4.755000e-01   p_cons 7.811000e-01   p_joint 6.528000e-01

Outputting figure to mutsig2_images.part000000000091/KIF24.3_4155_10000_0.4755_0.7811_0.6528.png
                gene_name: KIF24
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 84 percent done.
KIF25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.865137e-01	ci left: 3.834345e-02	ci right 4.632594e-02	k: 422	n:10000
Cons ci ratio: 1.581851e-02	ci left: 8.530443e-01	ci right 8.667453e-01	k: 8600	n:10000
KS ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
KIF25   10000 perm   2 sec   (6513 perm/sec)   p_kst 1.390000e-02   p_cons 8.600000e-01   p_joint 4.220000e-02

Joint ci ratio: 1.104967e-01	ci left: 5.591985e-02	ci right 6.250903e-02	k: 1183	n:20000
Cons ci ratio: 1.146626e-02	ci left: 8.489285e-01	ci right 8.587684e-01	k: 17078	n:20000
KS ci ratio: 2.249930e-01	ci left: 1.326674e-02	ci right 1.667640e-02	k: 298	n:20000
KIF25   20000 perm   4 sec   (5689 perm/sec)   p_kst 1.490000e-02   p_cons 8.539000e-01   p_joint 5.915000e-02

Joint ci ratio: 7.326931e-02	ci left: 8.389978e-02	ci right 9.031377e-02	k: 2612	n:30000
Cons ci ratio: 9.299341e-03	ci left: 8.515377e-01	ci right 8.595266e-01	k: 25667	n:30000
KS ci ratio: 1.778596e-01	ci left: 1.451487e-02	ci right 1.737998e-02	k: 477	n:30000
KIF25   30000 perm   6 sec   (5449 perm/sec)   p_kst 1.590000e-02   p_cons 8.555667e-01   p_joint 8.706667e-02

Joint ci ratio: 9.892069e-02	ci left: 3.590336e-02	ci right 3.966412e-02	k: 1510	n:40000
Cons ci ratio: 7.687797e-03	ci left: 8.633047e-01	ci right 8.699920e-01	k: 34667	n:40000
KS ci ratio: 1.569776e-01	ci left: 1.414395e-02	ci right 1.657714e-02	k: 613	n:40000
KIF25   40000 perm   8 sec   (5079 perm/sec)   p_kst 1.532500e-02   p_cons 8.666750e-01   p_joint 3.775000e-02

Joint ci ratio: 6.999836e-02	ci left: 5.695034e-02	ci right 6.110104e-02	k: 2950	n:50000
Cons ci ratio: 6.906283e-03	ci left: 8.626397e-01	ci right 8.686378e-01	k: 43283	n:50000
KS ci ratio: 1.390770e-01	ci left: 1.455130e-02	ci right 1.674546e-02	k: 781	n:50000
KIF25   50000 perm   10 sec   (4941 perm/sec)   p_kst 1.562000e-02   p_cons 8.656600e-01   p_joint 5.900000e-02

Joint ci ratio: 4.739333e-02	ci left: 9.991912e-02	ci right 1.047861e-01	k: 6140	n:60000
Cons ci ratio: 6.311104e-03	ci left: 8.626599e-01	ci right 8.681380e-01	k: 51925	n:60000
KS ci ratio: 1.271939e-01	ci left: 1.459130e-02	ci right 1.658929e-02	k: 934	n:60000
KIF25   60000 perm   13 sec   (4752 perm/sec)   p_kst 1.556667e-02   p_cons 8.654167e-01   p_joint 1.023333e-01

Joint ci ratio: 4.663791e-02	ci left: 8.952945e-02	ci right 9.381875e-02	k: 6416	n:70000
Cons ci ratio: 5.853370e-03	ci left: 8.624462e-01	ci right 8.675235e-01	k: 60550	n:70000
KS ci ratio: 1.181906e-01	ci left: 1.455626e-02	ci right 1.639850e-02	k: 1082	n:70000
KIF25   70000 perm   15 sec   (4677 perm/sec)   p_kst 1.545714e-02   p_cons 8.650000e-01   p_joint 9.165714e-02

Joint ci ratio: 5.471100e-02	ci left: 5.864786e-02	ci right 6.195911e-02	k: 4823	n:80000
Cons ci ratio: 5.519767e-03	ci left: 8.606986e-01	ci right 8.654750e-01	k: 69048	n:80000
KS ci ratio: 1.107262e-01	ci left: 1.457023e-02	ci right 1.629017e-02	k: 1233	n:80000
KIF25   80000 perm   17 sec   (4593 perm/sec)   p_kst 1.541250e-02   p_cons 8.631000e-01   p_joint 6.028750e-02

Joint ci ratio: 5.434846e-02	ci left: 5.315739e-02	ci right 5.613806e-02	k: 4917	n:90000
Cons ci ratio: 5.203831e-03	ci left: 8.608482e-01	ci right 8.653506e-01	k: 77680	n:90000
KS ci ratio: 1.049809e-01	ci left: 1.445407e-02	ci right 1.606628e-02	k: 1372	n:90000
KIF25   90000 perm   20 sec   (4453 perm/sec)   p_kst 1.524444e-02   p_cons 8.631111e-01   p_joint 5.463333e-02

Joint ci ratio: 5.700629e-02	ci left: 4.386144e-02	ci right 4.644502e-02	k: 4514	n:100000
Cons ci ratio: 4.949329e-03	ci left: 8.603601e-01	ci right 8.646388e-01	k: 86251	n:100000
KS ci ratio: 9.987845e-02	ci left: 1.441177e-02	ci right 1.593655e-02	k: 1516	n:100000
KIF25   100000 perm   23 sec   (4386 perm/sec)   p_kst 1.516000e-02   p_cons 8.625100e-01   p_joint 4.514000e-02

Outputting figure to mutsig2_images.part000000000091/KIF25.3_1187_100000_0.01516_0.86251_0.04514.png
                gene_name: KIF25
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.046 

Current progress: 85 percent done.
KIF2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.703178e-03	ci left: 9.487722e-01	ci right 9.571614e-01	k: 9531	n:10000
Cons ci ratio: 7.555118e-02	ci left: 2.040239e-01	ci right 2.201442e-01	k: 2120	n:10000
KS ci ratio: 1.306326e-02	ci left: 8.940557e-01	ci right 9.059101e-01	k: 9001	n:10000
KIF2A   10000 perm   2 sec   (4997 perm/sec)   p_kst 9.001000e-01   p_cons 2.120000e-01   p_joint 9.531000e-01

Outputting figure to mutsig2_images.part000000000091/KIF2A.3_2319_10000_0.9001_0.212_0.9531.png
                gene_name: KIF2A
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 86 percent done.
KIF3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.127486e-02	ci left: 6.013635e-01	ci right 6.205718e-01	k: 6110	n:10000
Cons ci ratio: 5.565406e-02	ci left: 3.222736e-01	ci right 3.408246e-01	k: 3315	n:10000
KS ci ratio: 3.292450e-02	ci left: 5.765733e-01	ci right 5.959764e-01	k: 5863	n:10000
KIF3C   10000 perm   2 sec   (4707 perm/sec)   p_kst 5.863000e-01   p_cons 3.315000e-01   p_joint 6.110000e-01

Outputting figure to mutsig2_images.part000000000091/KIF3C.3_2414_10000_0.5863_0.3315_0.611.png
                gene_name: KIF3C
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 87 percent done.
KIFC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.085144e-02	ci left: 4.694658e-01	ci right 4.891463e-01	k: 4793	n:10000
Cons ci ratio: 1.547546e-02	ci left: 8.583501e-01	ci right 8.718364e-01	k: 8652	n:10000
KS ci ratio: 5.955229e-02	ci left: 2.932083e-01	ci right 3.113070e-01	k: 3022	n:10000
KIFC3   10000 perm   2 sec   (4345 perm/sec)   p_kst 3.022000e-01   p_cons 8.652000e-01   p_joint 4.793000e-01

Outputting figure to mutsig2_images.part000000000091/KIFC3.3_2583_10000_0.3022_0.8652_0.4793.png
                gene_name: KIFC3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 89 percent done.
KIAA1530
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.609546e-02	ci left: 6.837536e-01	ci right 7.019339e-01	k: 6929	n:10000
KS ci ratio: 6.794962e-02	ci left: 2.411415e-01	ci right 2.582045e-01	k: 2496	n:10000
KIAA1530   10000 perm   2 sec   (5880 perm/sec)   p_kst 2.496000e-01   p_cons 6.929000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIAA1530.2_2182_10000_0.2496_0.6929_1.png
                gene_name: KIAA1530
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
KIAA1543
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.693080e-03	ci left: 9.938690e-01	ci right 9.966303e-01	k: 9954	n:10000
Cons ci ratio: 3.713756e-03	ci left: 9.891692e-01	ci right 9.929363e-01	k: 9912	n:10000
KS ci ratio: 7.216969e-03	ci left: 9.636253e-01	ci right 9.706991e-01	k: 9673	n:10000
KIAA1543   10000 perm   2 sec   (4052 perm/sec)   p_kst 9.673000e-01   p_cons 9.912000e-01   p_joint 9.954000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1543.2_3907_10000_0.9673_0.9912_0.9954.png
                gene_name: KIAA1543
               theta_stop: 0.0072 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1.00 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 91 percent done.
KIAA1644
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.502725e-02	ci left: 7.013997e-01	ci right 7.192776e-01	k: 7104	n:10000
KS ci ratio: 5.734068e-02	ci left: 3.092734e-01	ci right 3.276325e-01	k: 3184	n:10000
KIAA1644   10000 perm   2 sec   (6366 perm/sec)   p_kst 3.184000e-01   p_cons 7.104000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIAA1644.2_616_10000_0.3184_0.7104_1.png
                gene_name: KIAA1644
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
KIAA1949
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.077029e-02	ci left: 7.725604e-01	ci right 7.888758e-01	k: 7808	n:10000
Cons ci ratio: 4.319059e-03	ci left: 9.857766e-01	ci right 9.901322e-01	k: 9881	n:10000
KS ci ratio: 3.806611e-02	ci left: 5.047513e-01	ci right 5.244402e-01	k: 5146	n:10000
KIAA1949   10000 perm   2 sec   (5262 perm/sec)   p_kst 5.146000e-01   p_cons 9.881000e-01   p_joint 7.808000e-01

Outputting figure to mutsig2_images.part000000000091/KIAA1949.2_1854_10000_0.5146_0.9881_0.7808.png
                gene_name: KIAA1949
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 94 percent done.
KIF18B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.044745e-03	ci left: 9.811299e-01	ci right 9.861827e-01	k: 9838	n:10000
Cons ci ratio: 3.120469e-03	ci left: 9.920588e-01	ci right 9.952433e-01	k: 9938	n:10000
KS ci ratio: 7.852670e-03	ci left: 9.575422e-01	ci right 9.651860e-01	k: 9615	n:10000
KIF18B   10000 perm   2 sec   (5978 perm/sec)   p_kst 9.615000e-01   p_cons 9.938000e-01   p_joint 9.838000e-01

Outputting figure to mutsig2_images.part000000000091/KIF18B.2_2628_10000_0.9615_0.9938_0.9838.png
                gene_name: KIF18B
               theta_stop: 0.0079 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 95 percent done.
KIF19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.198729e-02	ci left: 2.203995e-01	ci right 2.369589e-01	k: 2286	n:10000
Cons ci ratio: 7.566438e-02	ci left: 2.035310e-01	ci right 2.196374e-01	k: 2115	n:10000
KS ci ratio: 3.364216e-02	ci left: 5.660425e-01	ci right 5.855133e-01	k: 5758	n:10000
KIF19   10000 perm   3 sec   (3338 perm/sec)   p_kst 5.758000e-01   p_cons 2.115000e-01   p_joint 2.286000e-01

Outputting figure to mutsig2_images.part000000000091/KIF19.2_3077_10000_0.5758_0.2115_0.2286.png
                gene_name: KIF19
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 96 percent done.
KIFAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.671024e-03	ci left: 9.593225e-01	ci right 9.668046e-01	k: 9632	n:10000
KS ci ratio: 4.016222e-02	ci left: 4.779579e-01	ci right 4.976493e-01	k: 4878	n:10000
KIFAP3   10000 perm   2 sec   (5771 perm/sec)   p_kst 4.878000e-01   p_cons 9.632000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000091/KIFAP3.2_2459_10000_0.4878_0.9632_1.png
                gene_name: KIFAP3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
KIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.427486e-02	ci left: 7.139129e-01	ci right 7.315572e-01	k: 7228	n:10000
Cons ci ratio: 8.467069e-02	ci left: 1.689744e-01	ci right 1.840145e-01	k: 1764	n:10000
KS ci ratio: 8.988259e-02	ci left: 1.525700e-01	ci right 1.670288e-01	k: 1597	n:10000
KIN   10000 perm   2 sec   (6549 perm/sec)   p_kst 1.597000e-01   p_cons 1.764000e-01   p_joint 7.228000e-01

Outputting figure to mutsig2_images.part000000000091/KIN.2_1234_10000_0.1597_0.1764_0.7228.png
                gene_name: KIN
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 99 percent done.
KIR2DL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.266640e-01	ci left: 8.183830e-02	ci right 9.300341e-02	k: 873	n:10000
Cons ci ratio: 4.339994e-02	ci left: 4.394169e-01	ci right 4.590127e-01	k: 4492	n:10000
KS ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
KIR2DL1   10000 perm   1 sec   (6708 perm/sec)   p_kst 3.010000e-02   p_cons 4.492000e-01   p_joint 8.730000e-02

Joint ci ratio: 1.900542e-02	ci left: 6.736853e-01	ci right 6.866623e-01	k: 13604	n:20000
Cons ci ratio: 3.058271e-02	ci left: 4.440365e-01	ci right 4.578778e-01	k: 9019	n:20000
KS ci ratio: 1.585670e-01	ci left: 2.729474e-02	ci right 3.204331e-02	k: 592	n:20000
KIR2DL1   20000 perm   3 sec   (5745 perm/sec)   p_kst 2.960000e-02   p_cons 4.509500e-01   p_joint 6.802000e-01

Joint ci ratio: 1.416477e-02	ci left: 7.134068e-01	ci right 7.236176e-01	k: 21556	n:30000
Cons ci ratio: 2.768028e-02	ci left: 3.950814e-01	ci right 4.062045e-01	k: 12019	n:30000
KS ci ratio: 1.298848e-01	ci left: 2.754976e-02	ci right 3.140874e-02	k: 883	n:30000
KIR2DL1   30000 perm   6 sec   (5384 perm/sec)   p_kst 2.943333e-02   p_cons 4.006333e-01   p_joint 7.185333e-01

Joint ci ratio: 1.700405e-02	ci left: 5.656816e-01	ci right 5.754081e-01	k: 22822	n:40000
Cons ci ratio: 2.411799e-02	ci left: 3.929238e-01	ci right 4.025411e-01	k: 15909	n:40000
KS ci ratio: 1.133624e-01	ci left: 2.737729e-02	ci right 3.069155e-02	k: 1160	n:40000
KIR2DL1   40000 perm   8 sec   (5242 perm/sec)   p_kst 2.900000e-02   p_cons 3.977250e-01   p_joint 5.705500e-01

Joint ci ratio: 2.579321e-02	ci left: 3.118859e-01	ci right 3.200555e-01	k: 15798	n:50000
Cons ci ratio: 2.151559e-02	ci left: 3.946837e-01	ci right 4.032880e-01	k: 19949	n:50000
KS ci ratio: 1.005855e-01	ci left: 2.799524e-02	ci right 3.097972e-02	k: 1473	n:50000
KIR2DL1   50000 perm   10 sec   (5114 perm/sec)   p_kst 2.946000e-02   p_cons 3.989800e-01   p_joint 3.159600e-01

Joint ci ratio: 2.354024e-02	ci left: 3.123471e-01	ci right 3.198041e-01	k: 18964	n:60000
Cons ci ratio: 1.966212e-02	ci left: 3.945459e-01	ci right 4.023972e-01	k: 23908	n:60000
KS ci ratio: 9.149713e-02	ci left: 2.832353e-02	ci right 3.105554e-02	k: 1780	n:60000
KIR2DL1   60000 perm   12 sec   (4992 perm/sec)   p_kst 2.966667e-02   p_cons 3.984667e-01   p_joint 3.160667e-01

Outputting figure to mutsig2_images.part000000000091/KIR2DL1.2_1079_60000_0.029667_0.39847_0.31607.png
                gene_name: KIR2DL1
               theta_stop: 0.091 
                    nperm: 60000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000091
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 91 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1417>
Subject: Job 9893990: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1417>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000092> was used as the working directory.
Started at Sat Oct  6 00:15:27 2012
Results reported at Sat Oct  6 03:46:37 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000092.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000092.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 92  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000092.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  13482.03 sec.
    Max Memory :      4393 MB
    Max Swap   :      6873 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
92
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 92
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 92: processing genes 8205 - 8294
Calculating significance of each gene.
Using projection method.
8205	KIR2DL4	1.542514e-01
8206	KIR2DS4	1
8207	KIR3DL1	1.030017e-01
8208	KIR3DL2	7.548692e-02
8209	KIR3DL3	5.471924e-02
8210	KIRREL	3.965119e-01
8211	KIRREL2	2.222969e-01
8212	KIRREL3	4.212545e-02
8213	KISS1	2.168990e-01
8214	KISS1R	1
8215	KIT	4.239957e-01
8216	KITLG	2.570243e-01
8217	KL	7.472274e-01
8218	KLB	7.961665e-01
8219	KLC1	6.282448e-01
8220	KLC2	3.382986e-01
8221	KLC3	1
8222	KLC4	1.773820e-02
8223	KLF1	6.188380e-01
8224	KLF10	8.743710e-01
8225	KLF11	5.010819e-01
8226	KLF12	4.577480e-01
8227	KLF14	3.017163e-01
8228	KLF15	1
8229	KLF17	6.959247e-01
8230	KLF3	2.742669e-01
8231	KLF4	5.402836e-01
8232	KLF5	3.554475e-01
8233	KLF6	6.349443e-01
8234	KLF7	3.314474e-01
8235	KLF8	3.970037e-02
8236	KLF9	1
8237	KLHDC1	5.703715e-01
8238	KLHDC10	1
8239	KLHDC2	3.825600e-01
8240	KLHDC3	6.807337e-01
8241	KLHDC4	1
8242	KLHDC5	8.503087e-02
8243	KLHDC7A	8.847289e-01
8244	KLHDC7B	6.915303e-01
8245	KLHDC8A	1
8246	KLHDC8B	1
8247	KLHDC9	1
8248	KLHL1	1.441613e-01
8249	KLHL10	7.686782e-01
8250	KLHL11	9.660040e-01
8251	KLHL12	8.718130e-01
8252	KLHL13	4.925570e-02
8253	KLHL14	7.527671e-01
8254	KLHL15	4.006336e-01
8255	KLHL17	1
8256	KLHL18	8.567222e-02
8257	KLHL2	4.544710e-01
8258	KLHL20	1.616384e-02
8259	KLHL21	1
8260	KLHL22	1
8261	KLHL23	2.094606e-01
8262	KLHL24	4.304085e-01
8263	KLHL25	5.488224e-01
8264	KLHL26	1
8265	KLHL28	8.622346e-01
8266	KLHL3	8.402920e-01
8267	KLHL30	1
8268	KLHL31	9.346565e-01
8269	KLHL32	2.153039e-02
In gene KLHL34 the following bins exceed PROBCAP:
    READ-AG-3727	categ 6	N = 1204    n = 1	mu =   2.96e-07
8270	KLHL34	7.697107e-01
8271	KLHL35	1
8272	KLHL36	1
8273	KLHL38	2.222581e-01
8274	KLHL4	2.058989e-08
8275	KLHL5	8.067024e-02
8276	KLHL6	2.984689e-01
8277	KLHL7	2.406584e-02
8278	KLHL8	6.245023e-01
8279	KLHL9	1.318905e-01
8280	KLK1	7.358399e-01
8281	KLK10	1
8282	KLK11	7.587619e-01
8283	KLK12	1.700161e-01
8284	KLK13	4.968015e-01
8285	KLK14	7.315583e-01
8286	KLK15	1.077278e-01
8287	KLK2	8.893179e-02
8288	KLK3	1
8289	KLK4	3.136375e-02
8290	KLK5	2.946714e-01
8291	KLK6	6.470466e-01
8292	KLK7	5.842783e-01
8293	KLK8	1
8294	KLK9	7.430459e-01
Done

Running MutSig 2:
Scatter job 92: processing genes 8205 - 8294
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KLHL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.922036e-02	ci left: 7.983141e-01	ci right 8.139072e-01	k: 8062	n:10000
Cons ci ratio: 3.802042e-02	ci left: 5.053515e-01	ci right 5.250397e-01	k: 5152	n:10000
KS ci ratio: 2.068535e-02	ci left: 7.739786e-01	ci right 7.902567e-01	k: 7822	n:10000
KLHL4   10000 perm   2 sec   (4540 perm/sec)   p_kst 7.822000e-01   p_cons 5.152000e-01   p_joint 8.062000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL4.16_2271_10000_0.7822_0.5152_0.8062.png
                gene_name: KLHL4
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 2 percent done.
KLHL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.759195e-01	ci left: 4.312598e-02	ci right 5.154025e-02	k: 472	n:10000
Cons ci ratio: 6.802223e-02	ci left: 2.407462e-01	ci right 2.578001e-01	k: 2492	n:10000
KS ci ratio: 1.883815e-01	ci left: 3.757958e-02	ci right 4.549032e-02	k: 414	n:10000
KLHL5   10000 perm   2 sec   (4235 perm/sec)   p_kst 4.140000e-02   p_cons 2.492000e-01   p_joint 4.720000e-02

Joint ci ratio: 1.231045e-01	ci left: 4.527241e-02	ci right 5.125980e-02	k: 964	n:20000
Cons ci ratio: 4.802881e-02	ci left: 2.438122e-01	ci right 2.558606e-01	k: 4996	n:20000
KS ci ratio: 1.362337e-01	ci left: 3.703607e-02	ci right 4.249877e-02	k: 794	n:20000
KLHL5   20000 perm   5 sec   (3718 perm/sec)   p_kst 3.970000e-02   p_cons 2.498000e-01   p_joint 4.820000e-02

Joint ci ratio: 8.017585e-02	ci left: 7.083352e-02	ci right 7.678267e-02	k: 2213	n:30000
Cons ci ratio: 3.696050e-02	ci left: 2.676329e-01	ci right 2.777445e-01	k: 8180	n:30000
KS ci ratio: 1.105850e-01	ci left: 3.797276e-02	ci right 4.245017e-02	k: 1205	n:30000
KLHL5   30000 perm   9 sec   (3325 perm/sec)   p_kst 4.016667e-02   p_cons 2.726667e-01   p_joint 7.376667e-02

Joint ci ratio: 6.954910e-02	ci left: 7.101041e-02	ci right 7.615170e-02	k: 2942	n:40000
Cons ci ratio: 3.201684e-02	ci left: 2.682154e-01	ci right 2.769676e-01	k: 10903	n:40000
KS ci ratio: 9.642769e-02	ci left: 3.775869e-02	ci right 4.160850e-02	k: 1586	n:40000
KLHL5   40000 perm   12 sec   (3357 perm/sec)   p_kst 3.965000e-02   p_cons 2.725750e-01   p_joint 7.355000e-02

Outputting figure to mutsig2_images.part000000000092/KLHL5.11_2312_40000_0.03965_0.27258_0.07355.png
                gene_name: KLHL5
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.076 

Current progress: 4 percent done.
KIRREL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.637165e-02	ci left: 6.792186e-01	ci right 6.974716e-01	k: 6884	n:10000
Cons ci ratio: 5.439399e-03	ci left: 9.783435e-01	ci right 9.837711e-01	k: 9812	n:10000
KS ci ratio: 3.743116e-02	ci left: 5.131551e-01	ci right 5.328315e-01	k: 5230	n:10000
KIRREL3   10000 perm   2 sec   (4938 perm/sec)   p_kst 5.230000e-01   p_cons 9.812000e-01   p_joint 6.884000e-01

Outputting figure to mutsig2_images.part000000000092/KIRREL3.10_2512_10000_0.523_0.9812_0.6884.png
                gene_name: KIRREL3
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 6 percent done.
KLHL32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.732659e-02	ci left: 1.603269e-01	ci right 1.750672e-01	k: 1676	n:10000
Cons ci ratio: 2.136983e-02	ci left: 7.625349e-01	ci right 7.791070e-01	k: 7709	n:10000
KS ci ratio: 1.276264e-01	ci left: 8.067319e-02	ci right 9.176924e-02	k: 861	n:10000
KLHL32   10000 perm   2 sec   (5360 perm/sec)   p_kst 8.610000e-02   p_cons 7.709000e-01   p_joint 1.676000e-01

Joint ci ratio: 6.458270e-02	ci left: 1.505031e-01	ci right 1.605973e-01	k: 3110	n:20000
Cons ci ratio: 1.535224e-02	ci left: 7.593126e-01	ci right 7.711102e-01	k: 15305	n:20000
KS ci ratio: 8.813772e-02	ci left: 8.601960e-02	ci right 9.400006e-02	k: 1799	n:20000
KLHL32   20000 perm   4 sec   (4657 perm/sec)   p_kst 8.995000e-02   p_cons 7.652500e-01   p_joint 1.555000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL32.9_1903_20000_0.08995_0.76525_0.1555.png
                gene_name: KLHL32
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 8 percent done.
KIT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.185010e-02	ci left: 5.926288e-01	ci right 6.119116e-01	k: 6023	n:10000
Cons ci ratio: 7.606034e-03	ci left: 9.599514e-01	ci right 9.673753e-01	k: 9638	n:10000
KS ci ratio: 4.329487e-02	ci left: 4.406142e-01	ci right 4.602147e-01	k: 4504	n:10000
KIT   10000 perm   2 sec   (4600 perm/sec)   p_kst 4.504000e-01   p_cons 9.638000e-01   p_joint 6.023000e-01

Outputting figure to mutsig2_images.part000000000092/KIT.8_3015_10000_0.4504_0.9638_0.6023.png
                gene_name: KIT
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 9 percent done.
KLC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.499528e-02	ci left: 3.275355e-01	ci right 3.461596e-01	k: 3368	n:10000
Cons ci ratio: 5.265484e-02	ci left: 3.471054e-01	ci right 3.659783e-01	k: 3565	n:10000
KS ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
KLC2   10000 perm   2 sec   (5125 perm/sec)   p_kst 2.266000e-01   p_cons 3.565000e-01   p_joint 3.368000e-01

Outputting figure to mutsig2_images.part000000000092/KLC2.8_1929_10000_0.2266_0.3565_0.3368.png
                gene_name: KLC2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 11 percent done.
KLC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.574205e-02	ci left: 3.215787e-01	ci right 3.401199e-01	k: 3308	n:10000
Cons ci ratio: 1.151171e-01	ci left: 9.788810e-02	ci right 1.099437e-01	k: 1038	n:10000
KS ci ratio: 2.834030e-02	ci left: 6.472993e-01	ci right 6.660094e-01	k: 6567	n:10000
KLC4   10000 perm   2 sec   (5445 perm/sec)   p_kst 6.567000e-01   p_cons 1.038000e-01   p_joint 3.308000e-01

Joint ci ratio: 4.607373e-02	ci left: 2.595878e-01	ci right 2.718804e-01	k: 5314	n:20000
Cons ci ratio: 8.020090e-02	ci left: 1.024046e-01	ci right 1.110102e-01	k: 2133	n:20000
KS ci ratio: 2.052710e-02	ci left: 6.391258e-01	ci right 6.524318e-01	k: 12916	n:20000
KLC4   20000 perm   4 sec   (4929 perm/sec)   p_kst 6.458000e-01   p_cons 1.066500e-01   p_joint 2.657000e-01

Outputting figure to mutsig2_images.part000000000092/KLC4.7_2047_20000_0.6458_0.10665_0.2657.png
                gene_name: KLC4
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 13 percent done.
KLHL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.377591e-03	ci left: 9.522126e-01	ci right 9.603189e-01	k: 9564	n:10000
KS ci ratio: 1.252672e-02	ci left: 9.015493e-01	ci right 9.130121e-01	k: 9074	n:10000
KLHL1   10000 perm   2 sec   (4400 perm/sec)   p_kst 9.074000e-01   p_cons 9.564000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL1.7_2291_10000_0.9074_0.9564_1.png
                gene_name: KLHL1
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
KLHL20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.842331e-02	ci left: 3.861969e-01	ci right 4.054639e-01	k: 3958	n:10000
KS ci ratio: 2.050926e-02	ci left: 7.769169e-01	ci right 7.931167e-01	k: 7851	n:10000
KLHL20   10000 perm   2 sec   (5226 perm/sec)   p_kst 7.851000e-01   p_cons 3.958000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL20.7_1874_10000_0.7851_0.3958_1.png
                gene_name: KLHL20
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
KLHL7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.803301e-02	ci left: 6.522301e-01	ci right 6.708757e-01	k: 6616	n:10000
KS ci ratio: 8.585952e-03	ci left: 9.500226e-01	ci right 9.583102e-01	k: 9543	n:10000
KLHL7   10000 perm   2 sec   (5352 perm/sec)   p_kst 9.543000e-01   p_cons 6.616000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL7.7_1868_10000_0.9543_0.6616_1.png
                gene_name: KLHL7
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
KIRREL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.750059e-03	ci left: 9.936409e-01	ci right 9.964588e-01	k: 9952	n:10000
KS ci ratio: 2.076422e-02	ci left: 7.726617e-01	ci right 7.889744e-01	k: 7809	n:10000
KIRREL2   10000 perm   2 sec   (4761 perm/sec)   p_kst 7.809000e-01   p_cons 9.952000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KIRREL2.6_2231_10000_0.7809_0.9952_1.png
                gene_name: KIRREL2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
KLHL13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.924324e-02	ci left: 2.342244e-01	ci right 2.511257e-01	k: 2426	n:10000
Cons ci ratio: 4.613273e-02	ci left: 4.095037e-01	ci right 4.289434e-01	k: 4192	n:10000
KS ci ratio: 8.879380e-02	ci left: 1.558095e-01	ci right 1.703873e-01	k: 1630	n:10000
KLHL13   10000 perm   2 sec   (4724 perm/sec)   p_kst 1.630000e-01   p_cons 4.192000e-01   p_joint 2.426000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL13.6_2249_10000_0.163_0.4192_0.2426.png
                gene_name: KLHL13
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 23 percent done.
KLHL18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.140060e-02	ci left: 2.232622e-01	ci right 2.398945e-01	k: 2315	n:10000
Cons ci ratio: 7.241845e-02	ci left: 2.183268e-01	ci right 2.348328e-01	k: 2265	n:10000
KS ci ratio: 4.811095e-02	ci left: 3.892832e-01	ci right 4.085757e-01	k: 3989	n:10000
KLHL18   10000 perm   2 sec   (4626 perm/sec)   p_kst 3.989000e-01   p_cons 2.265000e-01   p_joint 2.315000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL18.6_1765_10000_0.3989_0.2265_0.2315.png
                gene_name: KLHL18
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 25 percent done.
KLHL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.323001e-01	ci left: 7.533730e-02	ci right 8.610844e-02	k: 806	n:10000
Cons ci ratio: 9.780389e-02	ci left: 1.315900e-01	ci right 1.452214e-01	k: 1383	n:10000
KS ci ratio: 8.667538e-02	ci left: 1.623899e-01	ci right 1.772030e-01	k: 1697	n:10000
KLHL9   10000 perm   2 sec   (4917 perm/sec)   p_kst 1.697000e-01   p_cons 1.383000e-01   p_joint 8.060000e-02

Joint ci ratio: 8.376039e-02	ci left: 9.455091e-02	ci right 1.028662e-01	k: 1973	n:20000
Cons ci ratio: 6.859909e-02	ci left: 1.355143e-01	ci right 1.451905e-01	k: 2806	n:20000
KS ci ratio: 6.064544e-02	ci left: 1.675337e-01	ci right 1.780616e-01	k: 3455	n:20000
KLHL9   20000 perm   4 sec   (4523 perm/sec)   p_kst 1.727500e-01   p_cons 1.403000e-01   p_joint 9.865000e-02

Outputting figure to mutsig2_images.part000000000092/KLHL9.6_1858_20000_0.17275_0.1403_0.09865.png
                gene_name: KLHL9
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 26 percent done.
KIRREL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.164895e-02	ci left: 3.559523e-01	ci right 3.749262e-01	k: 3654	n:10000
Cons ci ratio: 4.474909e-02	ci left: 4.243561e-01	ci right 4.438824e-01	k: 4341	n:10000
KS ci ratio: 6.400080e-02	ci left: 2.639885e-01	ci right 2.815440e-01	k: 2727	n:10000
KIRREL   10000 perm   2 sec   (5233 perm/sec)   p_kst 2.727000e-01   p_cons 4.341000e-01   p_joint 3.654000e-01

Outputting figure to mutsig2_images.part000000000092/KIRREL.5_2334_10000_0.2727_0.4341_0.3654.png
                gene_name: KIRREL
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 28 percent done.
KLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.277074e-01	ci left: 8.057611e-02	ci right 9.166638e-02	k: 860	n:10000
Cons ci ratio: 2.442917e-01	ci left: 2.202897e-02	ci right 2.825186e-02	k: 250	n:10000
KS ci ratio: 5.932719e-02	ci left: 2.947944e-01	ci right 3.129200e-01	k: 3038	n:10000
KLB   10000 perm   2 sec   (4830 perm/sec)   p_kst 3.038000e-01   p_cons 2.500000e-02   p_joint 8.600000e-02

Joint ci ratio: 1.096138e-01	ci left: 5.679652e-02	ci right 6.343209e-02	k: 1201	n:20000
Cons ci ratio: 1.723925e-01	ci left: 2.302419e-02	ci right 2.741533e-02	k: 503	n:20000
KS ci ratio: 4.201533e-02	ci left: 2.968338e-01	ci right 3.096235e-01	k: 6064	n:20000
KLB   20000 perm   4 sec   (4473 perm/sec)   p_kst 3.032000e-01   p_cons 2.515000e-02   p_joint 6.005000e-02

Joint ci ratio: 7.266175e-02	ci left: 8.521100e-02	ci right 9.166896e-02	k: 2652	n:30000
Cons ci ratio: 1.304178e-01	ci left: 2.732382e-02	ci right 3.116807e-02	k: 876	n:30000
KS ci ratio: 3.440443e-02	ci left: 2.968073e-01	ci right 3.072311e-01	k: 9060	n:30000
KLB   30000 perm   7 sec   (4275 perm/sec)   p_kst 3.020000e-01   p_cons 2.920000e-02   p_joint 8.840000e-02

Joint ci ratio: 7.555567e-02	ci left: 6.066285e-02	ci right 6.545082e-02	k: 2521	n:40000
Cons ci ratio: 1.164458e-01	ci left: 2.594355e-02	ci right 2.917553e-02	k: 1101	n:40000
KS ci ratio: 2.984880e-02	ci left: 2.967559e-01	ci right 3.057730e-01	k: 12050	n:40000
KLB   40000 perm   10 sec   (4168 perm/sec)   p_kst 3.012500e-01   p_cons 2.752500e-02   p_joint 6.302500e-02

Joint ci ratio: 5.995577e-02	ci left: 7.639374e-02	ci right 8.113530e-02	k: 3937	n:50000
Cons ci ratio: 1.042498e-01	ci left: 2.606457e-02	ci right 2.895064e-02	k: 1374	n:50000
KS ci ratio: 2.668586e-02	ci left: 2.974194e-01	ci right 3.054837e-01	k: 15072	n:50000
KLB   50000 perm   12 sec   (4080 perm/sec)   p_kst 3.014400e-01   p_cons 2.748000e-02   p_joint 7.874000e-02

Joint ci ratio: 5.795359e-02	ci left: 6.879303e-02	ci right 7.291526e-02	k: 4250	n:60000
Cons ci ratio: 9.460815e-02	ci left: 2.649910e-02	ci right 2.914684e-02	k: 1668	n:60000
KS ci ratio: 2.481020e-02	ci left: 2.901570e-01	ci right 2.974629e-01	k: 17628	n:60000
KLB   60000 perm   15 sec   (3988 perm/sec)   p_kst 2.938000e-01   p_cons 2.780000e-02   p_joint 7.083333e-02

Outputting figure to mutsig2_images.part000000000092/KLB.5_3155_60000_0.2938_0.0278_0.070833.png
                gene_name: KLB
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.073 

Current progress: 30 percent done.
KLHDC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.013935e-01	ci left: 3.281488e-02	ci right 4.025825e-02	k: 364	n:10000
Cons ci ratio: 1.688045e-02	ci left: 8.363308e-01	ci right 8.506684e-01	k: 8436	n:10000
KS ci ratio: 2.682907e-01	ci left: 1.809309e-02	ci right 2.379077e-02	k: 208	n:10000
KLHDC5   10000 perm   2 sec   (5866 perm/sec)   p_kst 2.080000e-02   p_cons 8.436000e-01   p_joint 3.640000e-02

Joint ci ratio: 1.258701e-01	ci left: 4.333189e-02	ci right 4.920094e-02	k: 924	n:20000
Cons ci ratio: 1.174967e-02	ci left: 8.426448e-01	ci right 8.526539e-01	k: 16954	n:20000
KS ci ratio: 1.937784e-01	ci left: 1.810475e-02	ci right 2.203652e-02	k: 400	n:20000
KLHDC5   20000 perm   4 sec   (5246 perm/sec)   p_kst 2.000000e-02   p_cons 8.477000e-01   p_joint 4.620000e-02

Joint ci ratio: 1.054925e-01	ci left: 4.167427e-02	ci right 4.634789e-02	k: 1319	n:30000
Cons ci ratio: 9.651506e-03	ci left: 8.420002e-01	ci right 8.501993e-01	k: 25384	n:30000
KS ci ratio: 1.595109e-01	ci left: 1.815744e-02	ci right 2.133653e-02	k: 591	n:30000
KLHDC5   30000 perm   6 sec   (5002 perm/sec)   p_kst 1.970000e-02   p_cons 8.461333e-01   p_joint 4.396667e-02

Joint ci ratio: 8.880349e-02	ci left: 4.438357e-02	ci right 4.853259e-02	k: 1857	n:40000
Cons ci ratio: 8.363450e-03	ci left: 8.423999e-01	ci right 8.494998e-01	k: 33839	n:40000
KS ci ratio: 1.388908e-01	ci left: 1.816740e-02	ci right 2.090298e-02	k: 780	n:40000
KLHDC5   40000 perm   8 sec   (4828 perm/sec)   p_kst 1.950000e-02   p_cons 8.459750e-01   p_joint 4.642500e-02

Joint ci ratio: 7.184045e-02	ci left: 5.417745e-02	ci right 5.823427e-02	k: 2809	n:50000
Cons ci ratio: 7.461358e-03	ci left: 8.434515e-01	ci right 8.497882e-01	k: 42332	n:50000
KS ci ratio: 1.250967e-01	ci left: 1.805392e-02	ci right 2.048235e-02	k: 962	n:50000
KLHDC5   50000 perm   11 sec   (4671 perm/sec)   p_kst 1.924000e-02   p_cons 8.466400e-01   p_joint 5.618000e-02

Joint ci ratio: 7.278231e-02	ci left: 4.443572e-02	ci right 4.780835e-02	k: 2766	n:60000
Cons ci ratio: 6.830191e-03	ci left: 8.430028e-01	ci right 8.487970e-01	k: 50755	n:60000
KS ci ratio: 1.148885e-01	ci left: 1.793877e-02	ci right 2.014143e-02	k: 1141	n:60000
KLHDC5   60000 perm   13 sec   (4561 perm/sec)   p_kst 1.901667e-02   p_cons 8.459167e-01   p_joint 4.610000e-02

Joint ci ratio: 7.009147e-02	ci left: 4.127028e-02	ci right 4.428205e-02	k: 2993	n:70000
Cons ci ratio: 6.301030e-03	ci left: 8.441534e-01	ci right 8.495035e-01	k: 59279	n:70000
KS ci ratio: 1.072032e-01	ci left: 1.773716e-02	ci right 1.976016e-02	k: 1311	n:70000
KLHDC5   70000 perm   16 sec   (4383 perm/sec)   p_kst 1.872857e-02   p_cons 8.468429e-01   p_joint 4.275714e-02

Joint ci ratio: 6.377189e-02	ci left: 4.365992e-02	ci right 4.654818e-02	k: 3607	n:80000
Cons ci ratio: 5.896171e-03	ci left: 8.442350e-01	ci right 8.492399e-01	k: 67740	n:80000
KS ci ratio: 9.931941e-02	ci left: 1.815054e-02	ci right 2.005956e-02	k: 1527	n:80000
KLHDC5   80000 perm   19 sec   (4241 perm/sec)   p_kst 1.908750e-02   p_cons 8.467500e-01   p_joint 4.508750e-02

Outputting figure to mutsig2_images.part000000000092/KLHDC5.5_1530_80000_0.019088_0.84675_0.045088.png
                gene_name: KLHDC5
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 32 percent done.
KLHL23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.597292e-02	ci left: 6.857695e-01	ci right 7.039168e-01	k: 6949	n:10000
Cons ci ratio: 2.787669e-02	ci left: 6.547462e-01	ci right 6.733581e-01	k: 6641	n:10000
KS ci ratio: 5.119552e-02	ci left: 3.600290e-01	ci right 3.790471e-01	k: 3695	n:10000
KLHL23   10000 perm   2 sec   (5775 perm/sec)   p_kst 3.695000e-01   p_cons 6.641000e-01   p_joint 6.949000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL23.5_1689_10000_0.3695_0.6641_0.6949.png
                gene_name: KLHL23
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 34 percent done.
KLHL38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.786775e-02	ci left: 8.204583e-01	ci right 8.353502e-01	k: 8280	n:10000
Cons ci ratio: 3.430777e-02	ci left: 5.564183e-01	ci right 5.759431e-01	k: 5662	n:10000
KS ci ratio: 3.614601e-02	ci left: 5.305716e-01	ci right 5.502048e-01	k: 5404	n:10000
KLHL38   10000 perm   2 sec   (5675 perm/sec)   p_kst 5.404000e-01   p_cons 5.662000e-01   p_joint 8.280000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL38.5_1758_10000_0.5404_0.5662_0.828.png
                gene_name: KLHL38
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 36 percent done.
KLHL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.022342e-02	ci left: 7.816803e-01	ci right 7.977506e-01	k: 7898	n:10000
Cons ci ratio: 3.301279e-02	ci left: 5.752692e-01	ci right 5.946812e-01	k: 5850	n:10000
KS ci ratio: 2.889536e-02	ci left: 6.384467e-01	ci right 6.572671e-01	k: 6479	n:10000
KLHL6   10000 perm   2 sec   (5305 perm/sec)   p_kst 6.479000e-01   p_cons 5.850000e-01   p_joint 7.898000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL6.5_1894_10000_0.6479_0.585_0.7898.png
                gene_name: KLHL6
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 38 percent done.
KLK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.140488e-02	ci left: 3.581397e-01	ci right 3.771375e-01	k: 3676	n:10000
Cons ci ratio: 9.419989e-02	ci left: 1.406033e-01	ci right 1.546027e-01	k: 1475	n:10000
KS ci ratio: 3.808135e-02	ci left: 5.045512e-01	ci right 5.242404e-01	k: 5144	n:10000
KLK4   10000 perm   2 sec   (5613 perm/sec)   p_kst 5.144000e-01   p_cons 1.475000e-01   p_joint 3.676000e-01

Outputting figure to mutsig2_images.part000000000092/KLK4.5_785_10000_0.5144_0.1475_0.3676.png
                gene_name: KLK4
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 40 percent done.
KIR3DL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.730385e-02	ci left: 5.148561e-01	ci right 5.345295e-01	k: 5247	n:10000
KS ci ratio: 2.757738e-02	ci left: 6.595781e-01	ci right 6.781235e-01	k: 6689	n:10000
KIR3DL1   10000 perm   2 sec   (5278 perm/sec)   p_kst 6.689000e-01   p_cons 5.247000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KIR3DL1.4_1371_10000_0.6689_0.5247_1.png
                gene_name: KIR3DL1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
KIR3DL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.121293e-01	ci left: 1.027615e-01	ci right 1.150674e-01	k: 1088	n:10000
Cons ci ratio: 9.032022e-02	ci left: 1.512941e-01	ci right 1.657054e-01	k: 1584	n:10000
KS ci ratio: 1.178575e-01	ci left: 9.370045e-02	ci right 1.055340e-01	k: 995	n:10000
KIR3DL2   10000 perm   2 sec   (5404 perm/sec)   p_kst 9.950000e-02   p_cons 1.584000e-01   p_joint 1.088000e-01

Joint ci ratio: 7.816569e-02	ci left: 1.073170e-01	ci right 1.160963e-01	k: 2233	n:20000
Cons ci ratio: 6.057130e-02	ci left: 1.678795e-01	ci right 1.784157e-01	k: 3462	n:20000
KS ci ratio: 8.244601e-02	ci left: 9.734785e-02	ci right 1.057684e-01	k: 2030	n:20000
KIR3DL2   20000 perm   4 sec   (4935 perm/sec)   p_kst 1.015000e-01   p_cons 1.731000e-01   p_joint 1.116500e-01

Outputting figure to mutsig2_images.part000000000092/KIR3DL2.4_1404_20000_0.1015_0.1731_0.11165.png
                gene_name: KIR3DL2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 43 percent done.
KIR3DL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.649439e-02	ci left: 2.492482e-01	ci right 2.664931e-01	k: 2578	n:10000
Cons ci ratio: 6.290595e-02	ci left: 2.708188e-01	ci right 2.885097e-01	k: 2796	n:10000
KS ci ratio: 6.427613e-02	ci left: 2.623061e-01	ci right 2.798274e-01	k: 2710	n:10000
KIR3DL3   10000 perm   2 sec   (5608 perm/sec)   p_kst 2.710000e-01   p_cons 2.796000e-01   p_joint 2.578000e-01

Outputting figure to mutsig2_images.part000000000092/KIR3DL3.4_1265_10000_0.271_0.2796_0.2578.png
                gene_name: KIR3DL3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 45 percent done.
KL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.593619e-02	ci left: 6.863743e-01	ci right 7.045117e-01	k: 6955	n:10000
Cons ci ratio: 1.693157e-02	ci left: 8.355163e-01	ci right 8.498835e-01	k: 8428	n:10000
KS ci ratio: 3.567568e-02	ci left: 5.370809e-01	ci right 5.566918e-01	k: 5469	n:10000
KL   10000 perm   2 sec   (4765 perm/sec)   p_kst 5.469000e-01   p_cons 8.428000e-01   p_joint 6.955000e-01

Outputting figure to mutsig2_images.part000000000092/KL.4_3059_10000_0.5469_0.8428_0.6955.png
                gene_name: KL
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 47 percent done.
KLF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.135306e-01	ci left: 2.911124e-02	ci right 3.616447e-02	k: 325	n:10000
Cons ci ratio: 2.008231e-01	ci left: 3.300513e-02	ci right 4.046787e-02	k: 366	n:10000
KS ci ratio: 1.632674e-01	ci left: 5.003500e-02	ci right 5.902673e-02	k: 544	n:10000
KLF8   10000 perm   2 sec   (6058 perm/sec)   p_kst 5.440000e-02   p_cons 3.660000e-02   p_joint 3.250000e-02

Joint ci ratio: 1.127405e-01	ci left: 5.377780e-02	ci right 6.025175e-02	k: 1139	n:20000
Cons ci ratio: 1.354374e-01	ci left: 3.747135e-02	ci right 4.296335e-02	k: 803	n:20000
KS ci ratio: 1.142358e-01	ci left: 5.241537e-02	ci right 5.881460e-02	k: 1111	n:20000
KLF8   20000 perm   4 sec   (5416 perm/sec)   p_kst 5.555000e-02   p_cons 4.015000e-02   p_joint 5.695000e-02

Joint ci ratio: 1.049530e-01	ci left: 4.209669e-02	ci right 4.679205e-02	k: 1332	n:30000
Cons ci ratio: 1.100160e-01	ci left: 3.836215e-02	ci right 4.286070e-02	k: 1217	n:30000
KS ci ratio: 9.126319e-02	ci left: 5.528338e-02	ci right 6.060264e-02	k: 1737	n:30000
KLF8   30000 perm   6 sec   (5155 perm/sec)   p_kst 5.790000e-02   p_cons 4.056667e-02   p_joint 4.440000e-02

Joint ci ratio: 9.254841e-02	ci left: 4.093499e-02	ci right 4.493171e-02	k: 1716	n:40000
Cons ci ratio: 9.458102e-02	ci left: 3.922427e-02	ci right 4.314270e-02	k: 1646	n:40000
KS ci ratio: 7.957251e-02	ci left: 5.491942e-02	ci right 5.949513e-02	k: 2287	n:40000
KLF8   40000 perm   8 sec   (4971 perm/sec)   p_kst 5.717500e-02   p_cons 4.115000e-02   p_joint 4.290000e-02

Outputting figure to mutsig2_images.part000000000092/KLF8.4_1104_40000_0.057175_0.04115_0.0429.png
                gene_name: KLF8
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.045 

Current progress: 49 percent done.
KLHL24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.153030e-01	ci left: 9.759583e-02	ci right 1.096362e-01	k: 1035	n:10000
Cons ci ratio: 9.999502e-02	ci left: 1.264999e-01	ci right 1.399146e-01	k: 1331	n:10000
KS ci ratio: 1.002993e-01	ci left: 1.258149e-01	ci right 1.391999e-01	k: 1324	n:10000
KLHL24   10000 perm   2 sec   (5660 perm/sec)   p_kst 1.324000e-01   p_cons 1.331000e-01   p_joint 1.035000e-01

Joint ci ratio: 7.824457e-02	ci left: 1.071204e-01	ci right 1.158929e-01	k: 2229	n:20000
Cons ci ratio: 7.154726e-02	ci left: 1.258113e-01	ci right 1.351964e-01	k: 2609	n:20000
KS ci ratio: 6.990824e-02	ci left: 1.310804e-01	ci right 1.406257e-01	k: 2716	n:20000
KLHL24   20000 perm   4 sec   (5100 perm/sec)   p_kst 1.358000e-01   p_cons 1.304500e-01   p_joint 1.114500e-01

Outputting figure to mutsig2_images.part000000000092/KLHL24.4_1827_20000_0.1358_0.13045_0.11145.png
                gene_name: KLHL24
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 51 percent done.
KLHL25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.084215e-01	ci left: 1.092981e-01	ci right 1.219268e-01	k: 1155	n:10000
Cons ci ratio: 3.520321e-02	ci left: 5.436920e-01	ci right 5.632768e-01	k: 5535	n:10000
KS ci ratio: 3.456111e-01	ci left: 1.050669e-02	ci right 1.498385e-02	k: 126	n:10000
KLHL25   10000 perm   2 sec   (5019 perm/sec)   p_kst 1.260000e-02   p_cons 5.535000e-01   p_joint 1.155000e-01

Joint ci ratio: 1.403283e-01	ci left: 3.490943e-02	ci right 4.022610e-02	k: 750	n:20000
Cons ci ratio: 2.468071e-02	ci left: 5.508339e-01	ci right 5.646493e-01	k: 11155	n:20000
KS ci ratio: 2.463622e-01	ci left: 1.095946e-02	ci right 1.408466e-02	k: 249	n:20000
KLHL25   20000 perm   4 sec   (4575 perm/sec)   p_kst 1.245000e-02   p_cons 5.577500e-01   p_joint 3.750000e-02

Joint ci ratio: 7.460641e-02	ci left: 8.111420e-02	ci right 8.743325e-02	k: 2527	n:30000
Cons ci ratio: 2.027018e-02	ci left: 5.492212e-01	ci right 5.605016e-01	k: 16646	n:30000
KS ci ratio: 2.033636e-01	ci left: 1.098852e-02	ci right 1.350727e-02	k: 366	n:30000
KLHL25   30000 perm   7 sec   (4388 perm/sec)   p_kst 1.220000e-02   p_cons 5.548667e-01   p_joint 8.423333e-02

Joint ci ratio: 8.448177e-02	ci left: 4.891322e-02	ci right 5.325225e-02	k: 2042	n:40000
Cons ci ratio: 1.759262e-02	ci left: 5.489123e-01	ci right 5.586799e-01	k: 22152	n:40000
KS ci ratio: 1.784089e-01	ci left: 1.086039e-02	ci right 1.301133e-02	k: 476	n:40000
KLHL25   40000 perm   9 sec   (4238 perm/sec)   p_kst 1.190000e-02   p_cons 5.538000e-01   p_joint 5.105000e-02

Joint ci ratio: 6.362514e-02	ci left: 6.831060e-02	ci right 7.281941e-02	k: 3527	n:50000
Cons ci ratio: 1.566169e-02	ci left: 5.517519e-01	ci right 5.604816e-01	k: 27806	n:50000
KS ci ratio: 1.611196e-01	ci left: 1.075669e-02	ci right 1.266064e-02	k: 584	n:50000
KLHL25   50000 perm   12 sec   (4133 perm/sec)   p_kst 1.168000e-02   p_cons 5.561200e-01   p_joint 7.054000e-02

Joint ci ratio: 8.876060e-02	ci left: 3.008417e-02	ci right 3.289473e-02	k: 1888	n:60000
Cons ci ratio: 1.459112e-02	ci left: 5.420558e-01	ci right 5.500398e-01	k: 32763	n:60000
KS ci ratio: 1.482614e-01	ci left: 1.066224e-02	ci right 1.238550e-02	k: 690	n:60000
KLHL25   60000 perm   15 sec   (4040 perm/sec)   p_kst 1.150000e-02   p_cons 5.460500e-01   p_joint 3.146667e-02

Joint ci ratio: 8.713482e-02	ci left: 2.687424e-02	ci right 2.933652e-02	k: 1966	n:70000
Cons ci ratio: 1.351133e-02	ci left: 5.422599e-01	ci right 5.496506e-01	k: 38217	n:70000
KS ci ratio: 1.377977e-01	ci left: 1.064053e-02	ci right 1.222893e-02	k: 799	n:70000
KLHL25   70000 perm   18 sec   (3954 perm/sec)   p_kst 1.141429e-02   p_cons 5.459571e-01   p_joint 2.808571e-02

Joint ci ratio: 8.488933e-02	ci left: 2.485927e-02	ci right 2.707529e-02	k: 2076	n:80000
Cons ci ratio: 1.266090e-02	ci left: 5.416290e-01	ci right 5.485427e-01	k: 43607	n:80000
KS ci ratio: 1.281407e-01	ci left: 1.082110e-02	ci right 1.231464e-02	k: 924	n:80000
KLHL25   80000 perm   21 sec   (3871 perm/sec)   p_kst 1.155000e-02   p_cons 5.450875e-01   p_joint 2.595000e-02

Joint ci ratio: 8.712055e-02	ci left: 2.104069e-02	ci right 2.296807e-02	k: 1979	n:90000
Cons ci ratio: 1.196277e-02	ci left: 5.407503e-01	ci right 5.472691e-01	k: 48961	n:90000
KS ci ratio: 1.210848e-01	ci left: 1.081365e-02	ci right 1.221810e-02	k: 1035	n:90000
KLHL25   90000 perm   24 sec   (3806 perm/sec)   p_kst 1.150000e-02   p_cons 5.440111e-01   p_joint 2.198889e-02

Joint ci ratio: 8.364662e-02	ci left: 2.059033e-02	ci right 2.239757e-02	k: 2148	n:100000
Cons ci ratio: 1.134755e-02	ci left: 5.409768e-01	ci right 5.471606e-01	k: 54407	n:100000
KS ci ratio: 1.147257e-01	ci left: 1.087752e-02	ci right 1.221104e-02	k: 1153	n:100000
KLHL25   100000 perm   27 sec   (3754 perm/sec)   p_kst 1.153000e-02   p_cons 5.440700e-01   p_joint 2.148000e-02

Joint ci ratio: 6.955603e-02	ci left: 2.708663e-02	ci right 2.904745e-02	k: 3086	n:110000
Cons ci ratio: 1.082695e-02	ci left: 5.407782e-01	ci right 5.466741e-01	k: 59810	n:110000
KS ci ratio: 1.094478e-01	ci left: 1.089598e-02	ci right 1.216634e-02	k: 1267	n:110000
KLHL25   110000 perm   30 sec   (3707 perm/sec)   p_kst 1.151818e-02   p_cons 5.437273e-01   p_joint 2.805455e-02

Joint ci ratio: 6.432720e-02	ci left: 2.905024e-02	ci right 3.098923e-02	k: 3601	n:120000
Cons ci ratio: 1.035946e-02	ci left: 5.412185e-01	ci right 5.468627e-01	k: 65285	n:120000
KS ci ratio: 1.036300e-01	ci left: 1.117232e-02	ci right 1.240144e-02	k: 1413	n:120000
KLHL25   120000 perm   33 sec   (3659 perm/sec)   p_kst 1.177500e-02   p_cons 5.440417e-01   p_joint 3.000833e-02

Joint ci ratio: 6.340590e-02	ci left: 2.765517e-02	ci right 2.947363e-02	k: 3712	n:130000
Cons ci ratio: 9.936774e-03	ci left: 5.421420e-01	ci right 5.475637e-01	k: 70831	n:130000
KS ci ratio: 9.890781e-02	ci left: 1.134762e-02	ci right 1.253584e-02	k: 1551	n:130000
KLHL25   130000 perm   36 sec   (3604 perm/sec)   p_kst 1.193077e-02   p_cons 5.448538e-01   p_joint 2.855385e-02

Outputting figure to mutsig2_images.part000000000092/KLHL25.4_1774_130000_0.011931_0.54485_0.028554.png
                gene_name: KLHL25
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.029 

Current progress: 53 percent done.
KLF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.321103e-02	ci left: 7.316880e-01	ci right 7.489718e-01	k: 7404	n:10000
Cons ci ratio: 7.827576e-02	ci left: 1.925924e-01	ci right 2.083825e-01	k: 2004	n:10000
KS ci ratio: 1.362938e-02	ci left: 8.859570e-01	ci right 8.982135e-01	k: 8922	n:10000
KLF7   10000 perm   2 sec   (6186 perm/sec)   p_kst 8.922000e-01   p_cons 2.004000e-01   p_joint 7.404000e-01

Outputting figure to mutsig2_images.part000000000092/KLF7.3_925_10000_0.8922_0.2004_0.7404.png
                gene_name: KLF7
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 55 percent done.
KLHDC7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.813143e-02	ci left: 2.401532e-01	ci right 2.571935e-01	k: 2486	n:10000
Cons ci ratio: 9.537790e-02	ci left: 1.375651e-01	ci right 1.514427e-01	k: 1444	n:10000
KS ci ratio: 3.763418e-02	ci left: 5.104535e-01	ci right 5.301346e-01	k: 5203	n:10000
KLHDC7A   10000 perm   2 sec   (5681 perm/sec)   p_kst 5.203000e-01   p_cons 1.444000e-01   p_joint 2.486000e-01

Outputting figure to mutsig2_images.part000000000092/KLHDC7A.3_2338_10000_0.5203_0.1444_0.2486.png
                gene_name: KLHDC7A
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 57 percent done.
KLHL14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.135045e-02	ci left: 2.809205e-01	ci right 2.988021e-01	k: 2898	n:10000
Cons ci ratio: 1.211259e-01	ci left: 8.902986e-02	ci right 1.006074e-01	k: 947	n:10000
KS ci ratio: 5.645451e-02	ci left: 3.160206e-01	ci right 3.344813e-01	k: 3252	n:10000
KLHL14   10000 perm   2 sec   (5717 perm/sec)   p_kst 3.252000e-01   p_cons 9.470000e-02   p_joint 2.898000e-01

Joint ci ratio: 4.271666e-02	ci left: 2.899269e-01	ci right 3.026324e-01	k: 5925	n:20000
Cons ci ratio: 8.656147e-02	ci left: 8.896023e-02	ci right 9.705854e-02	k: 1859	n:20000
KS ci ratio: 3.963019e-02	ci left: 3.219414e-01	ci right 3.350085e-01	k: 6569	n:20000
KLHL14   20000 perm   4 sec   (5038 perm/sec)   p_kst 3.284500e-01   p_cons 9.295000e-02   p_joint 2.962500e-01

Outputting figure to mutsig2_images.part000000000092/KLHL14.3_1919_20000_0.32845_0.09295_0.29625.png
                gene_name: KLHL14
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 58 percent done.
KLHL15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.732284e-03	ci left: 9.484598e-01	ci right 9.568740e-01	k: 9528	n:10000
KS ci ratio: 1.626875e-02	ci left: 8.460089e-01	ci right 8.599848e-01	k: 8531	n:10000
KLHL15   10000 perm   2 sec   (5617 perm/sec)   p_kst 8.531000e-01   p_cons 9.528000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL15.3_1823_10000_0.8531_0.9528_1.png
                gene_name: KLHL15
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
KLHL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.337237e-03	ci left: 9.856678e-01	ci right 9.900411e-01	k: 9880	n:10000
Cons ci ratio: 3.964342e-02	ci left: 4.844537e-01	ci right 5.041496e-01	k: 4943	n:10000
KS ci ratio: 3.055584e-02	ci left: 6.124120e-01	ci right 6.315169e-01	k: 6220	n:10000
KLHL2   10000 perm   2 sec   (5717 perm/sec)   p_kst 6.220000e-01   p_cons 4.943000e-01   p_joint 9.880000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL2.3_1884_10000_0.622_0.4943_0.988.png
                gene_name: KLHL2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 62 percent done.
KLHL28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.442180e-02	ci left: 3.322029e-01	ci right 3.508895e-01	k: 3415	n:10000
KS ci ratio: 3.326494e-02	ci left: 5.715581e-01	ci right 5.909945e-01	k: 5813	n:10000
KLHL28   10000 perm   2 sec   (6179 perm/sec)   p_kst 5.813000e-01   p_cons 3.415000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL28.3_1732_10000_0.5813_0.3415_1.png
                gene_name: KLHL28
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
KLHL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.210996e-02	ci left: 5.887143e-01	ci right 6.080283e-01	k: 5984	n:10000
Cons ci ratio: 2.810815e-02	ci left: 6.510225e-01	ci right 6.696841e-01	k: 6604	n:10000
KS ci ratio: 4.338240e-02	ci left: 4.396164e-01	ci right 4.592131e-01	k: 4494	n:10000
KLHL3   10000 perm   2 sec   (5466 perm/sec)   p_kst 4.494000e-01   p_cons 6.604000e-01   p_joint 5.984000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL3.3_1824_10000_0.4494_0.6604_0.5984.png
                gene_name: KLHL3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 66 percent done.
KLK12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.386890e-02	ci left: 8.824747e-01	ci right 8.948979e-01	k: 8888	n:10000
KS ci ratio: 6.712391e-03	ci left: 9.681537e-01	ci right 9.747678e-01	k: 9716	n:10000
KLK12   10000 perm   2 sec   (5957 perm/sec)   p_kst 9.716000e-01   p_cons 8.888000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLK12.3_829_10000_0.9716_0.8888_1.png
                gene_name: KLK12
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
KLK15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.731236e-02	ci left: 1.965332e-01	ci right 2.124394e-01	k: 2044	n:10000
Cons ci ratio: 8.606556e-02	ci left: 1.643550e-01	ci right 1.792367e-01	k: 1717	n:10000
KS ci ratio: 1.183198e-01	ci left: 9.301905e-02	ci right 1.048158e-01	k: 988	n:10000
KLK15   10000 perm   2 sec   (6102 perm/sec)   p_kst 9.880000e-02   p_cons 1.717000e-01   p_joint 2.044000e-01

Joint ci ratio: 6.307669e-02	ci left: 1.567206e-01	ci right 1.669779e-01	k: 3236	n:20000
Cons ci ratio: 6.052902e-02	ci left: 1.680770e-01	ci right 1.786181e-01	k: 3466	n:20000
KS ci ratio: 8.350250e-02	ci left: 9.509059e-02	ci right 1.034263e-01	k: 1984	n:20000
KLK15   20000 perm   4 sec   (5453 perm/sec)   p_kst 9.920000e-02   p_cons 1.733000e-01   p_joint 1.618000e-01

Outputting figure to mutsig2_images.part000000000092/KLK15.3_791_20000_0.0992_0.1733_0.1618.png
                gene_name: KLK15
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 70 percent done.
KLK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 7.056825e-02	ci left: 2.274091e-01	ci right 2.441451e-01	k: 2357	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KLK2   10000 perm   1 sec   (6863 perm/sec)   p_kst 1.000000e-04   p_cons 2.357000e-01   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 4.965868e-02	ci left: 2.316158e-01	ci right 2.434606e-01	k: 4750	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KLK2   20000 perm   3 sec   (6053 perm/sec)   p_kst 5.000000e-05   p_cons 2.375000e-01   p_joint 0

Joint ci ratio: 6.354945e-01	ci left: 8.685245e-04	ci right 1.699591e-03	k: 37	n:30000
Cons ci ratio: 3.946993e-02	ci left: 2.425252e-01	ci right 2.523238e-01	k: 7422	n:30000
KS ci ratio: 2.263062e+00	ci left: 8.073745e-06	ci right 2.408020e-04	k: 2	n:30000
KLK2   30000 perm   5 sec   (5727 perm/sec)   p_kst 6.666667e-05   p_cons 2.474000e-01   p_joint 1.233333e-03

Joint ci ratio: 5.654566e-01	ci left: 8.634696e-04	ci right 1.562198e-03	k: 47	n:40000
Cons ci ratio: 3.409580e-02	ci left: 2.441218e-01	ci right 2.526147e-01	k: 9934	n:40000
KS ci ratio: 2.263100e+00	ci left: 6.055289e-06	ci right 1.806054e-04	k: 2	n:40000
KLK2   40000 perm   7 sec   (5499 perm/sec)   p_kst 5.000000e-05   p_cons 2.483500e-01   p_joint 1.175000e-03

Joint ci ratio: 5.235334e-01	ci left: 8.287747e-04	ci right 1.431564e-03	k: 55	n:50000
Cons ci ratio: 3.043551e-02	ci left: 2.453138e-01	ci right 2.529154e-01	k: 12455	n:50000
KS ci ratio: 1.959902e+00	ci left: 1.237361e-05	ci right 1.753353e-04	k: 3	n:50000
KLK2   50000 perm   9 sec   (5325 perm/sec)   p_kst 6.000000e-05   p_cons 2.491000e-01   p_joint 1.100000e-03

Joint ci ratio: 5.541361e-01	ci left: 6.042337e-04	ci right 1.079535e-03	k: 49	n:60000
Cons ci ratio: 2.782114e-02	ci left: 2.451456e-01	ci right 2.520787e-01	k: 14916	n:60000
KS ci ratio: 1.959918e+00	ci left: 1.031132e-05	ci right 1.461142e-04	k: 3	n:60000
KLK2   60000 perm   12 sec   (5174 perm/sec)   p_kst 5.000000e-05   p_cons 2.486000e-01   p_joint 8.166667e-04

Joint ci ratio: 6.531607e-01	ci left: 3.482923e-04	ci right 6.953110e-04	k: 35	n:70000
Cons ci ratio: 2.569760e-02	ci left: 2.462692e-01	ci right 2.526944e-01	k: 17463	n:70000
KS ci ratio: 1.959930e+00	ci left: 8.838260e-06	ci right 1.252416e-04	k: 3	n:70000
KLK2   70000 perm   14 sec   (5034 perm/sec)   p_kst 4.285714e-05   p_cons 2.494714e-01   p_joint 5.000000e-04

Joint ci ratio: 5.976300e-01	ci left: 3.783992e-04	ci right 7.095820e-04	k: 42	n:80000
Cons ci ratio: 2.408846e-02	ci left: 2.456951e-01	ci right 2.516981e-01	k: 19895	n:80000
KS ci ratio: 1.959939e+00	ci left: 7.733468e-06	ci right 1.095870e-04	k: 3	n:80000
KLK2   80000 perm   16 sec   (4909 perm/sec)   p_kst 3.750000e-05   p_cons 2.486875e-01   p_joint 5.250000e-04

Joint ci ratio: 6.047246e-01	ci left: 3.269337e-04	ci right 6.179623e-04	k: 41	n:90000
Cons ci ratio: 2.270609e-02	ci left: 2.459449e-01	ci right 2.516046e-01	k: 22389	n:90000
KS ci ratio: 1.959946e+00	ci left: 6.874187e-06	ci right 9.741102e-05	k: 3	n:90000
KLK2   90000 perm   19 sec   (4791 perm/sec)   p_kst 3.333333e-05   p_cons 2.487667e-01   p_joint 4.555556e-04

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.156615e-02	ci left: 2.456545e-01	ci right 2.510201e-01	k: 24833	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
KLK2   100000 perm   21 sec   (4683 perm/sec)   p_kst 1.000000e-05   p_cons 2.483300e-01   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 2.057575e-02	ci left: 2.455407e-01	ci right 2.506544e-01	k: 27290	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
KLK2   110000 perm   24 sec   (4583 perm/sec)   p_kst 9.090909e-06   p_cons 2.480909e-01   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 1.967825e-02	ci left: 2.460569e-01	ci right 2.509553e-01	k: 29820	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
KLK2   120000 perm   27 sec   (4483 perm/sec)   p_kst 8.333333e-06   p_cons 2.485000e-01   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 1.890979e-02	ci left: 2.460837e-01	ci right 2.507891e-01	k: 32296	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
KLK2   130000 perm   30 sec   (4390 perm/sec)   p_kst 7.692308e-06   p_cons 2.484308e-01   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 1.822834e-02	ci left: 2.460386e-01	ci right 2.505718e-01	k: 34762	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
KLK2   140000 perm   33 sec   (4303 perm/sec)   p_kst 7.142857e-06   p_cons 2.483000e-01   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 1.758797e-02	ci left: 2.465872e-01	ci right 2.509692e-01	k: 37316	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
KLK2   150000 perm   36 sec   (4219 perm/sec)   p_kst 6.666667e-06   p_cons 2.487733e-01   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 1.702032e-02	ci left: 2.468576e-01	ci right 2.511015e-01	k: 39836	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
KLK2   160000 perm   39 sec   (4129 perm/sec)   p_kst 6.250000e-06   p_cons 2.489750e-01   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 1.650170e-02	ci left: 2.471569e-01	ci right 2.512752e-01	k: 42366	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
KLK2   170000 perm   42 sec   (4038 perm/sec)   p_kst 5.882353e-06   p_cons 2.492118e-01   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 1.602849e-02	ci left: 2.474080e-01	ci right 2.514112e-01	k: 44893	n:180000
KS ci ratio: 2.263188e+00	ci left: 1.345610e-06	ci right 4.013657e-05	k: 2	n:180000
KLK2   180000 perm   46 sec   (3955 perm/sec)   p_kst 1.111111e-05   p_cons 2.494056e-01   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 1.559290e-02	ci left: 2.476552e-01	ci right 2.515524e-01	k: 47424	n:190000
KS ci ratio: 2.263189e+00	ci left: 1.274788e-06	ci right 3.802415e-05	k: 2	n:190000
KLK2   190000 perm   49 sec   (3873 perm/sec)   p_kst 1.052632e-05   p_cons 2.496000e-01   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 1.517723e-02	ci left: 2.482181e-01	ci right 2.520191e-01	k: 50023	n:200000
KS ci ratio: 2.263190e+00	ci left: 1.211049e-06	ci right 3.612297e-05	k: 2	n:200000
KLK2   200000 perm   53 sec   (3794 perm/sec)   p_kst 1.000000e-05   p_cons 2.501150e-01   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 1.480867e-02	ci left: 2.483343e-01	ci right 2.520440e-01	k: 52539	n:210000
KS ci ratio: 2.263192e+00	ci left: 1.153380e-06	ci right 3.440285e-05	k: 2	n:210000
KLK2   210000 perm   56 sec   (3723 perm/sec)   p_kst 9.523810e-06   p_cons 2.501857e-01   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 1.447011e-02	ci left: 2.483277e-01	ci right 2.519517e-01	k: 55030	n:220000
KS ci ratio: 2.263192e+00	ci left: 1.100953e-06	ci right 3.283910e-05	k: 2	n:220000
KLK2   220000 perm   60 sec   (3653 perm/sec)   p_kst 9.090909e-06   p_cons 2.501364e-01   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 1.414572e-02	ci left: 2.485350e-01	ci right 2.520800e-01	k: 57570	n:230000
KS ci ratio: 2.263193e+00	ci left: 1.053086e-06	ci right 3.141133e-05	k: 2	n:230000
KLK2   230000 perm   64 sec   (3583 perm/sec)   p_kst 8.695652e-06   p_cons 2.503043e-01   p_joint 0

Joint ci ratio: 1.239584e+00	ci left: 1.714753e-05	ci right 7.118548e-05	k: 9	n:240000
Cons ci ratio: 1.384436e-02	ci left: 2.486676e-01	ci right 2.521384e-01	k: 60096	n:240000
KS ci ratio: 1.959980e+00	ci left: 2.577808e-06	ci right 3.652987e-05	k: 3	n:240000
KLK2   240000 perm   68 sec   (3512 perm/sec)   p_kst 1.250000e-05   p_cons 2.504000e-01   p_joint 3.750000e-05

Joint ci ratio: 1.239586e+00	ci left: 1.646162e-05	ci right 6.833811e-05	k: 9	n:250000
Cons ci ratio: 1.356653e-02	ci left: 2.486507e-01	ci right 2.520511e-01	k: 62587	n:250000
KS ci ratio: 1.959980e+00	ci left: 2.474695e-06	ci right 3.506869e-05	k: 3	n:250000
KLK2   250000 perm   72 sec   (3456 perm/sec)   p_kst 1.200000e-05   p_cons 2.503480e-01   p_joint 3.600000e-05

Joint ci ratio: 1.239587e+00	ci left: 1.582848e-05	ci right 6.570976e-05	k: 9	n:260000
Cons ci ratio: 1.329947e-02	ci left: 2.487855e-01	ci right 2.521201e-01	k: 65117	n:260000
KS ci ratio: 1.959981e+00	ci left: 2.379514e-06	ci right 3.371991e-05	k: 3	n:260000
KLK2   260000 perm   76 sec   (3407 perm/sec)   p_kst 1.153846e-05   p_cons 2.504500e-01   p_joint 3.461538e-05

Joint ci ratio: 1.239588e+00	ci left: 1.524223e-05	ci right 6.327610e-05	k: 9	n:270000
Cons ci ratio: 1.304617e-02	ci left: 2.489514e-01	ci right 2.522243e-01	k: 67658	n:270000
KS ci ratio: 1.959982e+00	ci left: 2.291384e-06	ci right 3.247103e-05	k: 3	n:270000
KLK2   270000 perm   80 sec   (3358 perm/sec)   p_kst 1.111111e-05   p_cons 2.505852e-01   p_joint 3.333333e-05

Joint ci ratio: 1.131580e+00	ci left: 1.961144e-05	ci right 7.029190e-05	k: 11	n:280000
Cons ci ratio: 1.281144e-02	ci left: 2.489707e-01	ci right 2.521845e-01	k: 70161	n:280000
KS ci ratio: 1.753059e+00	ci left: 3.892390e-06	ci right 3.657669e-05	k: 4	n:280000
KLK2   280000 perm   85 sec   (3311 perm/sec)   p_kst 1.428571e-05   p_cons 2.505750e-01   p_joint 3.928571e-05

Joint ci ratio: 1.131581e+00	ci left: 1.893518e-05	ci right 6.786808e-05	k: 11	n:290000
Cons ci ratio: 1.258397e-02	ci left: 2.491371e-01	ci right 2.522955e-01	k: 72707	n:290000
KS ci ratio: 1.753059e+00	ci left: 3.758169e-06	ci right 3.531544e-05	k: 4	n:290000
KLK2   290000 perm   89 sec   (3264 perm/sec)   p_kst 1.379310e-05   p_cons 2.507138e-01   p_joint 3.793103e-05

Joint ci ratio: 1.181901e+00	ci left: 1.598474e-05	ci right 6.130033e-05	k: 10	n:300000
Cons ci ratio: 1.238093e-02	ci left: 2.489070e-01	ci right 2.520112e-01	k: 75137	n:300000
KS ci ratio: 1.753060e+00	ci left: 3.632896e-06	ci right 3.413827e-05	k: 4	n:300000
KLK2   300000 perm   93 sec   (3219 perm/sec)   p_kst 1.333333e-05   p_cons 2.504567e-01   p_joint 3.333333e-05

Joint ci ratio: 1.181902e+00	ci left: 1.546910e-05	ci right 5.932293e-05	k: 10	n:310000
Cons ci ratio: 1.218794e-02	ci left: 2.486760e-01	ci right 2.517286e-01	k: 77562	n:310000
KS ci ratio: 1.753060e+00	ci left: 3.515706e-06	ci right 3.303705e-05	k: 4	n:310000
KLK2   310000 perm   98 sec   (3174 perm/sec)   p_kst 1.290323e-05   p_cons 2.502000e-01   p_joint 3.225806e-05

Joint ci ratio: 1.131584e+00	ci left: 1.716000e-05	ci right 6.150554e-05	k: 11	n:320000
Cons ci ratio: 1.199999e-02	ci left: 2.485753e-01	ci right 2.515793e-01	k: 80024	n:320000
KS ci ratio: 1.753061e+00	ci left: 3.405839e-06	ci right 3.200465e-05	k: 4	n:320000
KLK2   320000 perm   102 sec   (3127 perm/sec)   p_kst 1.250000e-05   p_cons 2.500750e-01   p_joint 3.437500e-05

Joint ci ratio: 1.087189e+00	ci left: 1.878976e-05	ci right 6.351909e-05	k: 12	n:330000
Cons ci ratio: 1.181676e-02	ci left: 2.485989e-01	ci right 2.515570e-01	k: 82525	n:330000
KS ci ratio: 1.600316e+00	ci left: 4.919673e-06	ci right 3.535822e-05	k: 5	n:330000
KLK2   330000 perm   107 sec   (3080 perm/sec)   p_kst 1.515152e-05   p_cons 2.500758e-01   p_joint 3.636364e-05

Joint ci ratio: 1.087190e+00	ci left: 1.823711e-05	ci right 6.165091e-05	k: 12	n:340000
Cons ci ratio: 1.163738e-02	ci left: 2.487595e-01	ci right 2.516742e-01	k: 85073	n:340000
KS ci ratio: 1.600317e+00	ci left: 4.774977e-06	ci right 3.431829e-05	k: 5	n:340000
KLK2   340000 perm   112 sec   (3034 perm/sec)   p_kst 1.470588e-05   p_cons 2.502147e-01   p_joint 3.529412e-05

Joint ci ratio: 1.087191e+00	ci left: 1.771605e-05	ci right 5.988948e-05	k: 12	n:350000
Cons ci ratio: 1.147203e-02	ci left: 2.487115e-01	ci right 2.515840e-01	k: 87551	n:350000
KS ci ratio: 1.600317e+00	ci left: 4.638548e-06	ci right 3.333777e-05	k: 5	n:350000
KLK2   350000 perm   117 sec   (2994 perm/sec)   p_kst 1.428571e-05   p_cons 2.501457e-01   p_joint 3.428571e-05

Joint ci ratio: 1.047642e+00	ci left: 1.922778e-05	ci right 6.175031e-05	k: 13	n:360000
Cons ci ratio: 1.130593e-02	ci left: 2.489188e-01	ci right 2.517518e-01	k: 90120	n:360000
KS ci ratio: 1.481604e+00	ci left: 6.116397e-06	ci right 3.627596e-05	k: 6	n:360000
KLK2   360000 perm   122 sec   (2957 perm/sec)   p_kst 1.666667e-05   p_cons 2.503333e-01   p_joint 3.611111e-05

Joint ci ratio: 1.012118e+00	ci left: 2.068645e-05	ci right 6.348465e-05	k: 14	n:370000
Cons ci ratio: 1.114827e-02	ci left: 2.490667e-01	ci right 2.518616e-01	k: 92671	n:370000
KS ci ratio: 1.481605e+00	ci left: 5.951088e-06	ci right 3.529554e-05	k: 6	n:370000
KLK2   370000 perm   127 sec   (2922 perm/sec)   p_kst 1.621622e-05   p_cons 2.504622e-01   p_joint 3.783784e-05

Joint ci ratio: 1.012118e+00	ci left: 2.014206e-05	ci right 6.181402e-05	k: 14	n:380000
Cons ci ratio: 1.100714e-02	ci left: 2.488629e-01	ci right 2.516199e-01	k: 95091	n:380000
KS ci ratio: 1.481605e+00	ci left: 5.794480e-06	ci right 3.436672e-05	k: 6	n:380000
KLK2   380000 perm   132 sec   (2888 perm/sec)   p_kst 1.578947e-05   p_cons 2.502395e-01   p_joint 3.684211e-05

Joint ci ratio: 1.012119e+00	ci left: 1.962560e-05	ci right 6.022906e-05	k: 14	n:390000
Cons ci ratio: 1.086647e-02	ci left: 2.488335e-01	ci right 2.515548e-01	k: 97575	n:390000
KS ci ratio: 1.481606e+00	ci left: 5.645903e-06	ci right 3.348553e-05	k: 6	n:390000
KLK2   390000 perm   137 sec   (2854 perm/sec)   p_kst 1.538462e-05   p_cons 2.501923e-01   p_joint 3.589744e-05

Joint ci ratio: 1.012119e+00	ci left: 1.913495e-05	ci right 5.872336e-05	k: 14	n:400000
Cons ci ratio: 1.072513e-02	ci left: 2.490130e-01	ci right 2.517006e-01	k: 100142	n:400000
KS ci ratio: 1.481606e+00	ci left: 5.504755e-06	ci right 3.264840e-05	k: 6	n:400000
KLK2   400000 perm   142 sec   (2819 perm/sec)   p_kst 1.500000e-05   p_cons 2.503550e-01   p_joint 3.500000e-05

Joint ci ratio: 1.012120e+00	ci left: 1.866824e-05	ci right 5.729110e-05	k: 14	n:410000
Cons ci ratio: 1.059213e-02	ci left: 2.490793e-01	ci right 2.517340e-01	k: 102666	n:410000
KS ci ratio: 1.481606e+00	ci left: 5.370492e-06	ci right 3.185210e-05	k: 6	n:410000
KLK2   410000 perm   147 sec   (2785 perm/sec)   p_kst 1.463415e-05   p_cons 2.504049e-01   p_joint 3.414634e-05

Joint ci ratio: 9.799802e-01	ci left: 1.998915e-05	ci right 5.890460e-05	k: 15	n:420000
Cons ci ratio: 1.046574e-02	ci left: 2.490784e-01	ci right 2.517012e-01	k: 105163	n:420000
KS ci ratio: 1.481607e+00	ci left: 5.242623e-06	ci right 3.109372e-05	k: 6	n:420000
KLK2   420000 perm   153 sec   (2748 perm/sec)   p_kst 1.428571e-05   p_cons 2.503881e-01   p_joint 3.571429e-05

Joint ci ratio: 9.507198e-01	ci left: 2.126848e-05	ci right 6.042487e-05	k: 16	n:430000
Cons ci ratio: 1.034659e-02	ci left: 2.489756e-01	ci right 2.515673e-01	k: 107616	n:430000
KS ci ratio: 1.385915e+00	ci left: 6.545055e-06	ci right 3.354082e-05	k: 7	n:430000
KLK2   430000 perm   158 sec   (2717 perm/sec)   p_kst 1.627907e-05   p_cons 2.502698e-01   p_joint 3.720930e-05

Joint ci ratio: 1.012121e+00	ci left: 1.739540e-05	ci right 5.338493e-05	k: 14	n:440000
Cons ci ratio: 1.022907e-02	ci left: 2.489638e-01	ci right 2.515258e-01	k: 110107	n:440000
KS ci ratio: 1.385915e+00	ci left: 6.396303e-06	ci right 3.277853e-05	k: 7	n:440000
KLK2   440000 perm   164 sec   (2686 perm/sec)   p_kst 1.590909e-05   p_cons 2.502432e-01   p_joint 3.181818e-05

Joint ci ratio: 1.012122e+00	ci left: 1.700883e-05	ci right 5.219861e-05	k: 14	n:450000
Cons ci ratio: 1.011809e-02	ci left: 2.488551e-01	ci right 2.513881e-01	k: 112554	n:450000
KS ci ratio: 1.385915e+00	ci left: 6.254162e-06	ci right 3.205013e-05	k: 7	n:450000
KLK2   450000 perm   169 sec   (2655 perm/sec)   p_kst 1.555556e-05   p_cons 2.501200e-01   p_joint 3.111111e-05

Joint ci ratio: 1.012122e+00	ci left: 1.663908e-05	ci right 5.106387e-05	k: 14	n:460000
Cons ci ratio: 1.000509e-02	ci left: 2.489597e-01	ci right 2.514652e-01	k: 115097	n:460000
KS ci ratio: 1.385916e+00	ci left: 6.118202e-06	ci right 3.135339e-05	k: 7	n:460000
KLK2   460000 perm   175 sec   (2626 perm/sec)   p_kst 1.521739e-05   p_cons 2.502109e-01   p_joint 3.043478e-05

Joint ci ratio: 1.047647e+00	ci left: 1.472764e-05	ci right 4.729825e-05	k: 13	n:470000
Cons ci ratio: 9.901007e-03	ci left: 2.488624e-01	ci right 2.513407e-01	k: 117547	n:470000
KS ci ratio: 1.385916e+00	ci left: 5.988027e-06	ci right 3.068630e-05	k: 7	n:470000
KLK2   470000 perm   181 sec   (2597 perm/sec)   p_kst 1.489362e-05   p_cons 2.501000e-01   p_joint 2.765957e-05

Joint ci ratio: 1.047648e+00	ci left: 1.442081e-05	ci right 4.631288e-05	k: 13	n:480000
Cons ci ratio: 9.799670e-03	ci left: 2.487859e-01	ci right 2.512380e-01	k: 120005	n:480000
KS ci ratio: 1.385916e+00	ci left: 5.863276e-06	ci right 3.004701e-05	k: 7	n:480000
KLK2   480000 perm   187 sec   (2568 perm/sec)   p_kst 1.458333e-05   p_cons 2.500104e-01   p_joint 2.708333e-05

Joint ci ratio: 1.181910e+00	ci left: 9.786550e-06	ci right 3.753102e-05	k: 10	n:490000
Cons ci ratio: 9.701540e-03	ci left: 2.487065e-01	ci right 2.511331e-01	k: 122460	n:490000
KS ci ratio: 1.385917e+00	ci left: 5.743617e-06	ci right 2.943381e-05	k: 7	n:490000
KLK2   490000 perm   193 sec   (2538 perm/sec)   p_kst 1.428571e-05   p_cons 2.499184e-01   p_joint 2.040816e-05

Joint ci ratio: 1.181910e+00	ci left: 9.590818e-06	ci right 3.678040e-05	k: 10	n:500000
Cons ci ratio: 9.607069e-03	ci left: 2.486005e-01	ci right 2.510024e-01	k: 124900	n:500000
KS ci ratio: 1.385917e+00	ci left: 5.628744e-06	ci right 2.884514e-05	k: 7	n:500000
KLK2   500000 perm   199 sec   (2512 perm/sec)   p_kst 1.400000e-05   p_cons 2.498000e-01   p_joint 2.000000e-05

Joint ci ratio: 1.181911e+00	ci left: 9.402762e-06	ci right 3.605923e-05	k: 10	n:510000
Cons ci ratio: 9.515354e-03	ci left: 2.484969e-01	ci right 2.508746e-01	k: 127339	n:510000
KS ci ratio: 1.385917e+00	ci left: 5.518376e-06	ci right 2.827955e-05	k: 7	n:510000
KLK2   510000 perm   205 sec   (2484 perm/sec)   p_kst 1.372549e-05   p_cons 2.496843e-01   p_joint 1.960784e-05

Joint ci ratio: 1.181911e+00	ci left: 9.221939e-06	ci right 3.536578e-05	k: 10	n:520000
Cons ci ratio: 9.420315e-03	ci left: 2.486315e-01	ci right 2.509867e-01	k: 129900	n:520000
KS ci ratio: 1.385917e+00	ci left: 5.412253e-06	ci right 2.773572e-05	k: 7	n:520000
KLK2   520000 perm   212 sec   (2458 perm/sec)   p_kst 1.346154e-05   p_cons 2.498077e-01   p_joint 1.923077e-05

Joint ci ratio: 1.181911e+00	ci left: 9.047939e-06	ci right 3.469851e-05	k: 10	n:530000
Cons ci ratio: 9.332388e-03	ci left: 2.485879e-01	ci right 2.509205e-01	k: 132369	n:530000
KS ci ratio: 1.385918e+00	ci left: 5.310135e-06	ci right 2.721240e-05	k: 7	n:530000
KLK2   530000 perm   218 sec   (2431 perm/sec)   p_kst 1.320755e-05   p_cons 2.497528e-01   p_joint 1.886792e-05

Joint ci ratio: 1.087198e+00	ci left: 1.148260e-05	ci right 3.881743e-05	k: 12	n:540000
Cons ci ratio: 9.246329e-03	ci left: 2.485681e-01	ci right 2.508790e-01	k: 134850	n:540000
KS ci ratio: 1.306655e+00	ci left: 6.396007e-06	ci right 2.919088e-05	k: 8	n:540000
KLK2   540000 perm   224 sec   (2408 perm/sec)   p_kst 1.481481e-05   p_cons 2.497222e-01   p_joint 2.222222e-05

Joint ci ratio: 1.047650e+00	ci left: 1.258543e-05	ci right 4.041856e-05	k: 13	n:550000
Cons ci ratio: 9.161319e-03	ci left: 2.486019e-01	ci right 2.508917e-01	k: 137360	n:550000
KS ci ratio: 1.306655e+00	ci left: 6.279715e-06	ci right 2.866014e-05	k: 8	n:550000
KLK2   550000 perm   231 sec   (2384 perm/sec)   p_kst 1.454545e-05   p_cons 2.497455e-01   p_joint 2.363636e-05

Joint ci ratio: 1.047650e+00	ci left: 1.236069e-05	ci right 3.969681e-05	k: 13	n:560000
Cons ci ratio: 9.080948e-03	ci left: 2.485382e-01	ci right 2.508072e-01	k: 139816	n:560000
KS ci ratio: 1.306655e+00	ci left: 6.167577e-06	ci right 2.814836e-05	k: 8	n:560000
KLK2   560000 perm   238 sec   (2354 perm/sec)   p_kst 1.428571e-05   p_cons 2.496714e-01   p_joint 2.321429e-05

Joint ci ratio: 1.047650e+00	ci left: 1.214383e-05	ci right 3.900038e-05	k: 13	n:570000
Cons ci ratio: 8.998567e-03	ci left: 2.486468e-01	ci right 2.508961e-01	k: 142369	n:570000
KS ci ratio: 1.306655e+00	ci left: 6.059374e-06	ci right 2.765453e-05	k: 8	n:570000
KLK2   570000 perm   245 sec   (2329 perm/sec)   p_kst 1.403509e-05   p_cons 2.497702e-01   p_joint 2.280702e-05

Joint ci ratio: 1.047651e+00	ci left: 1.193445e-05	ci right 3.832796e-05	k: 13	n:580000
Cons ci ratio: 8.920603e-03	ci left: 2.486588e-01	ci right 2.508886e-01	k: 144868	n:580000
KS ci ratio: 1.306655e+00	ci left: 5.954901e-06	ci right 2.717773e-05	k: 8	n:580000
KLK2   580000 perm   252 sec   (2305 perm/sec)   p_kst 1.379310e-05   p_cons 2.497724e-01   p_joint 2.241379e-05

Joint ci ratio: 1.047651e+00	ci left: 1.173217e-05	ci right 3.767834e-05	k: 13	n:590000
Cons ci ratio: 8.842512e-03	ci left: 2.487601e-01	ci right 2.509712e-01	k: 147420	n:590000
KS ci ratio: 1.306656e+00	ci left: 5.853970e-06	ci right 2.671709e-05	k: 8	n:590000
KLK2   590000 perm   259 sec   (2282 perm/sec)   p_kst 1.355932e-05   p_cons 2.498644e-01   p_joint 2.203390e-05

Joint ci ratio: 1.047651e+00	ci left: 1.153664e-05	ci right 3.705037e-05	k: 13	n:600000
Cons ci ratio: 8.768853e-03	ci left: 2.487549e-01	ci right 2.509475e-01	k: 149910	n:600000
KS ci ratio: 1.306656e+00	ci left: 5.756404e-06	ci right 2.627181e-05	k: 8	n:600000
KLK2   600000 perm   266 sec   (2259 perm/sec)   p_kst 1.333333e-05   p_cons 2.498500e-01   p_joint 2.166667e-05

Joint ci ratio: 1.047651e+00	ci left: 1.134751e-05	ci right 3.644300e-05	k: 13	n:610000
Cons ci ratio: 8.696053e-03	ci left: 2.487910e-01	ci right 2.509655e-01	k: 152425	n:610000
KS ci ratio: 1.306656e+00	ci left: 5.662036e-06	ci right 2.584113e-05	k: 8	n:610000
KLK2   610000 perm   273 sec   (2237 perm/sec)   p_kst 1.311475e-05   p_cons 2.498770e-01   p_joint 2.131148e-05

Joint ci ratio: 1.131595e+00	ci left: 8.856742e-06	ci right 3.174500e-05	k: 11	n:620000
Cons ci ratio: 8.627301e-03	ci left: 2.487276e-01	ci right 2.508844e-01	k: 154879	n:620000
KS ci ratio: 1.306656e+00	ci left: 5.570713e-06	ci right 2.542434e-05	k: 8	n:620000
KLK2   620000 perm   280 sec   (2217 perm/sec)   p_kst 1.290323e-05   p_cons 2.498048e-01   p_joint 1.774194e-05

Joint ci ratio: 1.131595e+00	ci left: 8.716159e-06	ci right 3.124112e-05	k: 11	n:630000
Cons ci ratio: 8.560553e-03	ci left: 2.486490e-01	ci right 2.507882e-01	k: 157322	n:630000
KS ci ratio: 1.306656e+00	ci left: 5.482289e-06	ci right 2.502078e-05	k: 8	n:630000
KLK2   630000 perm   287 sec   (2196 perm/sec)   p_kst 1.269841e-05   p_cons 2.497175e-01   p_joint 1.746032e-05

Joint ci ratio: 1.131595e+00	ci left: 8.579968e-06	ci right 3.075298e-05	k: 11	n:640000
Cons ci ratio: 8.493417e-03	ci left: 2.486571e-01	ci right 2.507796e-01	k: 159819	n:640000
KS ci ratio: 1.306656e+00	ci left: 5.396628e-06	ci right 2.462983e-05	k: 8	n:640000
KLK2   640000 perm   294 sec   (2175 perm/sec)   p_kst 1.250000e-05   p_cons 2.497172e-01   p_joint 1.718750e-05

Joint ci ratio: 1.131595e+00	ci left: 8.447968e-06	ci right 3.027986e-05	k: 11	n:650000
Cons ci ratio: 8.426556e-03	ci left: 2.487218e-01	ci right 2.508281e-01	k: 162353	n:650000
KS ci ratio: 1.306657e+00	ci left: 5.313602e-06	ci right 2.425092e-05	k: 8	n:650000
KLK2   650000 perm   302 sec   (2155 perm/sec)   p_kst 1.230769e-05   p_cons 2.497738e-01   p_joint 1.692308e-05

Joint ci ratio: 1.131595e+00	ci left: 8.319968e-06	ci right 2.982107e-05	k: 11	n:660000
Cons ci ratio: 8.363650e-03	ci left: 2.486773e-01	ci right 2.507673e-01	k: 164816	n:660000
KS ci ratio: 1.306657e+00	ci left: 5.233093e-06	ci right 2.388348e-05	k: 8	n:660000
KLK2   660000 perm   309 sec   (2136 perm/sec)   p_kst 1.212121e-05   p_cons 2.497212e-01   p_joint 1.666667e-05

Joint ci ratio: 1.131596e+00	ci left: 8.195789e-06	ci right 2.937599e-05	k: 11	n:670000
Cons ci ratio: 8.302396e-03	ci left: 2.486222e-01	ci right 2.506964e-01	k: 167271	n:670000
KS ci ratio: 1.306657e+00	ci left: 5.154987e-06	ci right 2.352701e-05	k: 8	n:670000
KLK2   670000 perm   317 sec   (2116 perm/sec)   p_kst 1.194030e-05   p_cons 2.496582e-01   p_joint 1.641791e-05

Joint ci ratio: 1.131596e+00	ci left: 8.075263e-06	ci right 2.894399e-05	k: 11	n:680000
Cons ci ratio: 8.241822e-03	ci left: 2.485981e-01	ci right 2.506569e-01	k: 169746	n:680000
KS ci ratio: 1.306657e+00	ci left: 5.079178e-06	ci right 2.318103e-05	k: 8	n:680000
KLK2   680000 perm   324 sec   (2097 perm/sec)   p_kst 1.176471e-05   p_cons 2.496265e-01   p_joint 1.617647e-05

Joint ci ratio: 1.131596e+00	ci left: 7.958229e-06	ci right 2.852451e-05	k: 11	n:690000
Cons ci ratio: 8.183156e-03	ci left: 2.485473e-01	ci right 2.505910e-01	k: 172202	n:690000
KS ci ratio: 1.306657e+00	ci left: 5.005567e-06	ci right 2.284507e-05	k: 8	n:690000
KLK2   690000 perm   332 sec   (2078 perm/sec)   p_kst 1.159420e-05   p_cons 2.495681e-01   p_joint 1.594203e-05

Joint ci ratio: 1.131596e+00	ci left: 7.844540e-06	ci right 2.811702e-05	k: 11	n:700000
Cons ci ratio: 8.124237e-03	ci left: 2.485665e-01	ci right 2.505956e-01	k: 174706	n:700000
KS ci ratio: 1.306657e+00	ci left: 4.934058e-06	ci right 2.251872e-05	k: 8	n:700000
KLK2   700000 perm   340 sec   (2060 perm/sec)   p_kst 1.142857e-05   p_cons 2.495800e-01   p_joint 1.571429e-05

Joint ci ratio: 1.131596e+00	ci left: 7.734053e-06	ci right 2.772101e-05	k: 11	n:710000
Cons ci ratio: 8.068758e-03	ci left: 2.484839e-01	ci right 2.504984e-01	k: 177138	n:710000
KS ci ratio: 1.306657e+00	ci left: 4.864565e-06	ci right 2.220155e-05	k: 8	n:710000
KLK2   710000 perm   348 sec   (2042 perm/sec)   p_kst 1.126761e-05   p_cons 2.494901e-01   p_joint 1.549296e-05

Joint ci ratio: 1.131596e+00	ci left: 7.626636e-06	ci right 2.733600e-05	k: 11	n:720000
Cons ci ratio: 8.012556e-03	ci left: 2.484897e-01	ci right 2.504901e-01	k: 179632	n:720000
KS ci ratio: 1.306658e+00	ci left: 4.797001e-06	ci right 2.189320e-05	k: 8	n:720000
KLK2   720000 perm   356 sec   (2025 perm/sec)   p_kst 1.111111e-05   p_cons 2.494889e-01   p_joint 1.527778e-05

Joint ci ratio: 1.131596e+00	ci left: 7.522161e-06	ci right 2.696154e-05	k: 11	n:730000
Cons ci ratio: 7.957803e-03	ci left: 2.484817e-01	ci right 2.504683e-01	k: 182116	n:730000
KS ci ratio: 1.306658e+00	ci left: 4.731288e-06	ci right 2.159330e-05	k: 8	n:730000
KLK2   730000 perm   364 sec   (2008 perm/sec)   p_kst 1.095890e-05   p_cons 2.494740e-01   p_joint 1.506849e-05

Joint ci ratio: 1.181915e+00	ci left: 6.480273e-06	ci right 2.485169e-05	k: 10	n:740000
Cons ci ratio: 7.904472e-03	ci left: 2.484591e-01	ci right 2.504321e-01	k: 184589	n:740000
KS ci ratio: 1.306658e+00	ci left: 4.667352e-06	ci right 2.130150e-05	k: 8	n:740000
KLK2   740000 perm   372 sec   (1991 perm/sec)   p_kst 1.081081e-05   p_cons 2.494446e-01   p_joint 1.351351e-05

Joint ci ratio: 1.181915e+00	ci left: 6.393870e-06	ci right 2.452034e-05	k: 10	n:750000
Cons ci ratio: 7.853597e-03	ci left: 2.483705e-01	ci right 2.503301e-01	k: 187012	n:750000
KS ci ratio: 1.306658e+00	ci left: 4.605120e-06	ci right 2.101748e-05	k: 8	n:750000
KLK2   750000 perm   380 sec   (1974 perm/sec)   p_kst 1.066667e-05   p_cons 2.493493e-01   p_joint 1.333333e-05

Joint ci ratio: 1.181915e+00	ci left: 6.309739e-06	ci right 2.419770e-05	k: 10	n:760000
Cons ci ratio: 7.801936e-03	ci left: 2.483684e-01	ci right 2.503151e-01	k: 189499	n:760000
KS ci ratio: 1.306658e+00	ci left: 4.544527e-06	ci right 2.074093e-05	k: 8	n:760000
KLK2   760000 perm   388 sec   (1957 perm/sec)   p_kst 1.052632e-05   p_cons 2.493408e-01   p_joint 1.315789e-05

Joint ci ratio: 1.181915e+00	ci left: 6.227795e-06	ci right 2.388345e-05	k: 10	n:770000
Cons ci ratio: 7.750313e-03	ci left: 2.484131e-01	ci right 2.503472e-01	k: 192022	n:770000
KS ci ratio: 1.306658e+00	ci left: 4.485507e-06	ci right 2.047157e-05	k: 8	n:770000
KLK2   770000 perm   397 sec   (1940 perm/sec)   p_kst 1.038961e-05   p_cons 2.493792e-01   p_joint 1.298701e-05

Joint ci ratio: 1.131597e+00	ci left: 7.039970e-06	ci right 2.523324e-05	k: 11	n:780000
Cons ci ratio: 7.701284e-03	ci left: 2.483799e-01	ci right 2.503014e-01	k: 194485	n:780000
KS ci ratio: 1.306658e+00	ci left: 4.428000e-06	ci right 2.020912e-05	k: 8	n:780000
KLK2   780000 perm   405 sec   (1924 perm/sec)   p_kst 1.025641e-05   p_cons 2.493397e-01   p_joint 1.410256e-05

Joint ci ratio: 1.131597e+00	ci left: 6.950856e-06	ci right 2.491384e-05	k: 11	n:790000
Cons ci ratio: 7.654520e-03	ci left: 2.482819e-01	ci right 2.501909e-01	k: 196896	n:790000
KS ci ratio: 1.306658e+00	ci left: 4.371949e-06	ci right 1.995331e-05	k: 8	n:790000
KLK2   790000 perm   414 sec   (1909 perm/sec)   p_kst 1.012658e-05   p_cons 2.492354e-01   p_joint 1.392405e-05

Joint ci ratio: 1.131597e+00	ci left: 6.863970e-06	ci right 2.460241e-05	k: 11	n:800000
Cons ci ratio: 7.607808e-03	ci left: 2.482250e-01	ci right 2.501218e-01	k: 199338	n:800000
KS ci ratio: 1.306659e+00	ci left: 4.317300e-06	ci right 1.970389e-05	k: 8	n:800000
KLK2   800000 perm   423 sec   (1891 perm/sec)   p_kst 1.000000e-05   p_cons 2.491725e-01   p_joint 1.375000e-05

Joint ci ratio: 1.131597e+00	ci left: 6.779229e-06	ci right 2.429868e-05	k: 11	n:810000
Cons ci ratio: 7.560320e-03	ci left: 2.482497e-01	ci right 2.501348e-01	k: 201845	n:810000
KS ci ratio: 1.306659e+00	ci left: 4.264000e-06	ci right 1.946063e-05	k: 8	n:810000
KLK2   810000 perm   432 sec   (1874 perm/sec)   p_kst 9.876543e-06   p_cons 2.491914e-01   p_joint 1.358025e-05

Joint ci ratio: 1.131598e+00	ci left: 6.696555e-06	ci right 2.400236e-05	k: 11	n:820000
Cons ci ratio: 7.513269e-03	ci left: 2.482957e-01	ci right 2.501695e-01	k: 204370	n:820000
KS ci ratio: 1.306659e+00	ci left: 4.212000e-06	ci right 1.922331e-05	k: 8	n:820000
KLK2   820000 perm   442 sec   (1857 perm/sec)   p_kst 9.756098e-06   p_cons 2.492317e-01   p_joint 1.341463e-05

Joint ci ratio: 1.131598e+00	ci left: 6.615874e-06	ci right 2.371318e-05	k: 11	n:830000
Cons ci ratio: 7.723789e-03	ci left: 2.359218e-01	ci right 2.377523e-01	k: 196574	n:830000
KS ci ratio: 1.306659e+00	ci left: 4.161252e-06	ci right 1.899171e-05	k: 8	n:830000
KLK2   830000 perm   451 sec   (1841 perm/sec)   p_kst 9.638554e-06   p_cons 2.368361e-01   p_joint 1.325301e-05

Joint ci ratio: 1.131598e+00	ci left: 6.537113e-06	ci right 2.343088e-05	k: 11	n:840000
Cons ci ratio: 7.677104e-03	ci left: 2.359542e-01	ci right 2.377738e-01	k: 198965	n:840000
KS ci ratio: 1.306659e+00	ci left: 4.111714e-06	ci right 1.876561e-05	k: 8	n:840000
KLK2   840000 perm   460 sec   (1826 perm/sec)   p_kst 9.523810e-06   p_cons 2.368631e-01   p_joint 1.309524e-05

Joint ci ratio: 1.131598e+00	ci left: 6.460206e-06	ci right 2.315522e-05	k: 11	n:850000
Cons ci ratio: 7.631281e-03	ci left: 2.359847e-01	ci right 2.377936e-01	k: 201355	n:850000
KS ci ratio: 1.306659e+00	ci left: 4.063340e-06	ci right 1.854484e-05	k: 8	n:850000
KLK2   850000 perm   469 sec   (1811 perm/sec)   p_kst 9.411765e-06   p_cons 2.368882e-01   p_joint 1.294118e-05

Joint ci ratio: 1.087204e+00	ci left: 7.209991e-06	ci right 2.437381e-05	k: 12	n:860000
Cons ci ratio: 7.585487e-03	ci left: 2.360516e-01	ci right 2.378501e-01	k: 203777	n:860000
KS ci ratio: 1.239605e+00	ci left: 4.785328e-06	ci right 1.986596e-05	k: 9	n:860000
KLK2   860000 perm   478 sec   (1797 perm/sec)   p_kst 1.046512e-05   p_cons 2.369500e-01   p_joint 1.395349e-05

Joint ci ratio: 1.087204e+00	ci left: 7.127117e-06	ci right 2.409365e-05	k: 12	n:870000
Cons ci ratio: 7.542666e-03	ci left: 2.360138e-01	ci right 2.378018e-01	k: 206109	n:870000
KS ci ratio: 1.239605e+00	ci left: 4.730324e-06	ci right 1.963761e-05	k: 9	n:870000
KLK2   870000 perm   488 sec   (1783 perm/sec)   p_kst 1.034483e-05   p_cons 2.369069e-01   p_joint 1.379310e-05

Joint ci ratio: 1.087204e+00	ci left: 7.046127e-06	ci right 2.381986e-05	k: 12	n:880000
Cons ci ratio: 7.499972e-03	ci left: 2.360051e-01	ci right 2.377829e-01	k: 208466	n:880000
KS ci ratio: 1.239605e+00	ci left: 4.676571e-06	ci right 1.941446e-05	k: 9	n:880000
KLK2   880000 perm   498 sec   (1769 perm/sec)   p_kst 1.022727e-05   p_cons 2.368932e-01   p_joint 1.363636e-05

Joint ci ratio: 1.087204e+00	ci left: 6.966957e-06	ci right 2.355222e-05	k: 12	n:890000
Cons ci ratio: 7.458923e-03	ci left: 2.359519e-01	ci right 2.377195e-01	k: 210783	n:890000
KS ci ratio: 1.239605e+00	ci left: 4.624025e-06	ci right 1.919632e-05	k: 9	n:890000
KLK2   890000 perm   507 sec   (1755 perm/sec)   p_kst 1.011236e-05   p_cons 2.368348e-01   p_joint 1.348315e-05

Joint ci ratio: 1.087204e+00	ci left: 6.889546e-06	ci right 2.329053e-05	k: 12	n:900000
Cons ci ratio: 7.416419e-03	ci left: 2.360030e-01	ci right 2.377609e-01	k: 213193	n:900000
KS ci ratio: 1.239605e+00	ci left: 4.572647e-06	ci right 1.898303e-05	k: 9	n:900000
KLK2   900000 perm   517 sec   (1742 perm/sec)   p_kst 1.000000e-05   p_cons 2.368811e-01   p_joint 1.333333e-05

Joint ci ratio: 1.087204e+00	ci left: 6.813837e-06	ci right 2.303460e-05	k: 12	n:910000
Cons ci ratio: 7.376046e-03	ci left: 2.359839e-01	ci right 2.377321e-01	k: 215540	n:910000
KS ci ratio: 1.239605e+00	ci left: 4.522398e-06	ci right 1.877443e-05	k: 9	n:910000
KLK2   910000 perm   526 sec   (1729 perm/sec)   p_kst 9.890110e-06   p_cons 2.368571e-01   p_joint 1.318681e-05

Joint ci ratio: 1.087204e+00	ci left: 6.739773e-06	ci right 2.278422e-05	k: 12	n:920000
Cons ci ratio: 7.335708e-03	ci left: 2.359956e-01	ci right 2.377343e-01	k: 217915	n:920000
KS ci ratio: 1.239605e+00	ci left: 4.473241e-06	ci right 1.857036e-05	k: 9	n:920000
KLK2   920000 perm   536 sec   (1716 perm/sec)   p_kst 9.782609e-06   p_cons 2.368641e-01   p_joint 1.304348e-05

Joint ci ratio: 1.087204e+00	ci left: 6.667302e-06	ci right 2.253923e-05	k: 12	n:930000
Cons ci ratio: 7.296871e-03	ci left: 2.359653e-01	ci right 2.376944e-01	k: 220251	n:930000
KS ci ratio: 1.239606e+00	ci left: 4.425142e-06	ci right 1.837068e-05	k: 9	n:930000
KLK2   930000 perm   546 sec   (1703 perm/sec)   p_kst 9.677419e-06   p_cons 2.368290e-01   p_joint 1.290323e-05

Joint ci ratio: 1.087204e+00	ci left: 6.596373e-06	ci right 2.229945e-05	k: 12	n:940000
Cons ci ratio: 7.258729e-03	ci left: 2.359313e-01	ci right 2.376512e-01	k: 222583	n:940000
KS ci ratio: 1.239606e+00	ci left: 4.378066e-06	ci right 1.817524e-05	k: 9	n:940000
KLK2   940000 perm   556 sec   (1690 perm/sec)   p_kst 9.574468e-06   p_cons 2.367904e-01   p_joint 1.276596e-05

Joint ci ratio: 1.087204e+00	ci left: 6.526938e-06	ci right 2.206472e-05	k: 12	n:950000
Cons ci ratio: 7.220149e-03	ci left: 2.359496e-01	ci right 2.376604e-01	k: 224964	n:950000
KS ci ratio: 1.239606e+00	ci left: 4.331981e-06	ci right 1.798393e-05	k: 9	n:950000
KLK2   950000 perm   567 sec   (1677 perm/sec)   p_kst 9.473684e-06   p_cons 2.368042e-01   p_joint 1.263158e-05

Joint ci ratio: 1.087204e+00	ci left: 6.458949e-06	ci right 2.183488e-05	k: 12	n:960000
Cons ci ratio: 7.183669e-03	ci left: 2.358927e-01	ci right 2.375944e-01	k: 227273	n:960000
KS ci ratio: 1.239606e+00	ci left: 4.286856e-06	ci right 1.779660e-05	k: 9	n:960000
KLK2   960000 perm   577 sec   (1665 perm/sec)   p_kst 9.375000e-06   p_cons 2.367427e-01   p_joint 1.250000e-05

Joint ci ratio: 1.087205e+00	ci left: 6.392361e-06	ci right 2.160978e-05	k: 12	n:970000
Cons ci ratio: 7.145798e-03	ci left: 2.359347e-01	ci right 2.376277e-01	k: 229677	n:970000
KS ci ratio: 1.239606e+00	ci left: 4.242661e-06	ci right 1.761313e-05	k: 9	n:970000
KLK2   970000 perm   587 sec   (1653 perm/sec)   p_kst 9.278351e-06   p_cons 2.367804e-01   p_joint 1.237113e-05

Joint ci ratio: 1.087205e+00	ci left: 6.327133e-06	ci right 2.138927e-05	k: 12	n:980000
Cons ci ratio: 7.109082e-03	ci left: 2.359474e-01	ci right 2.376317e-01	k: 232053	n:980000
KS ci ratio: 1.239606e+00	ci left: 4.199369e-06	ci right 1.743340e-05	k: 9	n:980000
KLK2   980000 perm   597 sec   (1641 perm/sec)   p_kst 9.183673e-06   p_cons 2.367888e-01   p_joint 1.224490e-05

Joint ci ratio: 1.087205e+00	ci left: 6.263222e-06	ci right 2.117322e-05	k: 12	n:990000
Cons ci ratio: 7.072215e-03	ci left: 2.359961e-01	ci right 2.376721e-01	k: 234465	n:990000
KS ci ratio: 1.239606e+00	ci left: 4.156951e-06	ci right 1.725731e-05	k: 9	n:990000
KLK2   990000 perm   608 sec   (1628 perm/sec)   p_kst 9.090909e-06   p_cons 2.368333e-01   p_joint 1.212121e-05

Joint ci ratio: 1.239606e+00	ci left: 4.115381e-06	ci right 1.708473e-05	k: 9	n:1000000
Cons ci ratio: 7.036032e-03	ci left: 2.360380e-01	ci right 2.377056e-01	k: 236871	n:1000000
KS ci ratio: 1.239606e+00	ci left: 4.115381e-06	ci right 1.708473e-05	k: 9	n:1000000
KLK2   1000000 perm   619 sec   (1616 perm/sec)   p_kst 9.000000e-06   p_cons 2.368710e-01   p_joint 9.000000e-06

Joint ci ratio: 1.239606e+00	ci left: 4.074635e-06	ci right 1.691558e-05	k: 9	n:1010000
Cons ci ratio: 7.002221e-03	ci left: 2.359850e-01	ci right 2.376442e-01	k: 239182	n:1010000
KS ci ratio: 1.239606e+00	ci left: 4.074635e-06	ci right 1.691558e-05	k: 9	n:1010000
KLK2   1010000 perm   629 sec   (1605 perm/sec)   p_kst 8.910891e-06   p_cons 2.368139e-01   p_joint 8.910891e-06

Joint ci ratio: 1.239606e+00	ci left: 4.034687e-06	ci right 1.674974e-05	k: 9	n:1020000
Cons ci ratio: 6.966435e-03	ci left: 2.360604e-01	ci right 2.377116e-01	k: 241623	n:1020000
KS ci ratio: 1.239606e+00	ci left: 4.034687e-06	ci right 1.674974e-05	k: 9	n:1020000
KLK2   1020000 perm   640 sec   (1594 perm/sec)   p_kst 8.823529e-06   p_cons 2.368853e-01   p_joint 8.823529e-06

Joint ci ratio: 1.239606e+00	ci left: 3.995515e-06	ci right 1.658712e-05	k: 9	n:1030000
Cons ci ratio: 6.932495e-03	ci left: 2.360665e-01	ci right 2.377097e-01	k: 243994	n:1030000
KS ci ratio: 1.239606e+00	ci left: 3.995515e-06	ci right 1.658712e-05	k: 9	n:1030000
KLK2   1030000 perm   651 sec   (1583 perm/sec)   p_kst 8.737864e-06   p_cons 2.368874e-01   p_joint 8.737864e-06

Joint ci ratio: 1.239606e+00	ci left: 3.957097e-06	ci right 1.642763e-05	k: 9	n:1040000
Cons ci ratio: 6.899725e-03	ci left: 2.360370e-01	ci right 2.376722e-01	k: 246328	n:1040000
KS ci ratio: 1.239606e+00	ci left: 3.957097e-06	ci right 1.642763e-05	k: 9	n:1040000
KLK2   1040000 perm   661 sec   (1573 perm/sec)   p_kst 8.653846e-06   p_cons 2.368538e-01   p_joint 8.653846e-06

Joint ci ratio: 1.239606e+00	ci left: 3.919410e-06	ci right 1.627118e-05	k: 9	n:1050000
Cons ci ratio: 6.867054e-03	ci left: 2.360271e-01	ci right 2.376544e-01	k: 248682	n:1050000
KS ci ratio: 1.239606e+00	ci left: 3.919410e-06	ci right 1.627118e-05	k: 9	n:1050000
KLK2   1050000 perm   672 sec   (1561 perm/sec)   p_kst 8.571429e-06   p_cons 2.368400e-01   p_joint 8.571429e-06

Joint ci ratio: 1.239606e+00	ci left: 3.882435e-06	ci right 1.611768e-05	k: 9	n:1060000
Cons ci ratio: 6.835521e-03	ci left: 2.359815e-01	ci right 2.376010e-01	k: 250998	n:1060000
KS ci ratio: 1.239606e+00	ci left: 3.882435e-06	ci right 1.611768e-05	k: 9	n:1060000
KLK2   1060000 perm   684 sec   (1551 perm/sec)   p_kst 8.490566e-06   p_cons 2.367906e-01   p_joint 8.490566e-06

Joint ci ratio: 1.239606e+00	ci left: 3.846150e-06	ci right 1.596705e-05	k: 9	n:1070000
Cons ci ratio: 6.803678e-03	ci left: 2.359761e-01	ci right 2.375880e-01	k: 253356	n:1070000
KS ci ratio: 1.239606e+00	ci left: 3.846150e-06	ci right 1.596705e-05	k: 9	n:1070000
KLK2   1070000 perm   695 sec   (1540 perm/sec)   p_kst 8.411215e-06   p_cons 2.367813e-01   p_joint 8.411215e-06

Joint ci ratio: 1.181918e+00	ci left: 4.440183e-06	ci right 1.702804e-05	k: 10	n:1080000
Cons ci ratio: 6.772780e-03	ci left: 2.359439e-01	ci right 2.375482e-01	k: 255685	n:1080000
KS ci ratio: 1.181918e+00	ci left: 4.440183e-06	ci right 1.702804e-05	k: 10	n:1080000
KLK2   1080000 perm   706 sec   (1530 perm/sec)   p_kst 9.259259e-06   p_cons 2.367454e-01   p_joint 9.259259e-06

Joint ci ratio: 1.181918e+00	ci left: 4.399448e-06	ci right 1.687182e-05	k: 10	n:1090000
Cons ci ratio: 6.741837e-03	ci left: 2.359371e-01	ci right 2.375340e-01	k: 258041	n:1090000
KS ci ratio: 1.181918e+00	ci left: 4.399448e-06	ci right 1.687182e-05	k: 10	n:1090000
KLK2   1090000 perm   718 sec   (1518 perm/sec)   p_kst 9.174312e-06   p_cons 2.367349e-01   p_joint 9.174312e-06

Joint ci ratio: 1.181918e+00	ci left: 4.359453e-06	ci right 1.671844e-05	k: 10	n:1100000
Cons ci ratio: 6.710284e-03	ci left: 2.359858e-01	ci right 2.375756e-01	k: 260458	n:1100000
KS ci ratio: 1.181918e+00	ci left: 4.359453e-06	ci right 1.671844e-05	k: 10	n:1100000
KLK2   1100000 perm   729 sec   (1508 perm/sec)   p_kst 9.090909e-06   p_cons 2.367800e-01   p_joint 9.090909e-06

Joint ci ratio: 1.181918e+00	ci left: 4.320178e-06	ci right 1.656783e-05	k: 10	n:1110000
Cons ci ratio: 6.679637e-03	ci left: 2.360085e-01	ci right 2.375911e-01	k: 262847	n:1110000
KS ci ratio: 1.181918e+00	ci left: 4.320178e-06	ci right 1.656783e-05	k: 10	n:1110000
KLK2   1110000 perm   741 sec   (1498 perm/sec)   p_kst 9.009009e-06   p_cons 2.367991e-01   p_joint 9.009009e-06

Joint ci ratio: 1.181918e+00	ci left: 4.281605e-06	ci right 1.641990e-05	k: 10	n:1120000
Cons ci ratio: 6.648387e-03	ci left: 2.360860e-01	ci right 2.376617e-01	k: 265298	n:1120000
KS ci ratio: 1.181918e+00	ci left: 4.281605e-06	ci right 1.641990e-05	k: 10	n:1120000
KLK2   1120000 perm   752 sec   (1489 perm/sec)   p_kst 8.928571e-06   p_cons 2.368732e-01   p_joint 8.928571e-06

Joint ci ratio: 1.181918e+00	ci left: 4.243715e-06	ci right 1.627459e-05	k: 10	n:1130000
Cons ci ratio: 6.618430e-03	ci left: 2.361154e-01	ci right 2.376842e-01	k: 267696	n:1130000
KS ci ratio: 1.181918e+00	ci left: 4.243715e-06	ci right 1.627459e-05	k: 10	n:1130000
KLK2   1130000 perm   764 sec   (1479 perm/sec)   p_kst 8.849558e-06   p_cons 2.368991e-01   p_joint 8.849558e-06

Joint ci ratio: 1.181918e+00	ci left: 4.206489e-06	ci right 1.613183e-05	k: 10	n:1140000
Cons ci ratio: 6.590697e-03	ci left: 2.360444e-01	ci right 2.376061e-01	k: 269980	n:1140000
KS ci ratio: 1.181918e+00	ci left: 4.206489e-06	ci right 1.613183e-05	k: 10	n:1140000
KLK2   1140000 perm   776 sec   (1469 perm/sec)   p_kst 8.771930e-06   p_cons 2.368246e-01   p_joint 8.771930e-06

Joint ci ratio: 1.181918e+00	ci left: 4.169911e-06	ci right 1.599156e-05	k: 10	n:1150000
Cons ci ratio: 6.560721e-03	ci left: 2.361171e-01	ci right 2.376721e-01	k: 272428	n:1150000
KS ci ratio: 1.181918e+00	ci left: 4.169911e-06	ci right 1.599156e-05	k: 10	n:1150000
KLK2   1150000 perm   789 sec   (1458 perm/sec)   p_kst 8.695652e-06   p_cons 2.368939e-01   p_joint 8.695652e-06

Joint ci ratio: 1.181918e+00	ci left: 4.133963e-06	ci right 1.585370e-05	k: 10	n:1160000
Cons ci ratio: 6.532473e-03	ci left: 2.361153e-01	ci right 2.376636e-01	k: 274791	n:1160000
KS ci ratio: 1.181918e+00	ci left: 4.133963e-06	ci right 1.585370e-05	k: 10	n:1160000
KLK2   1160000 perm   801 sec   (1449 perm/sec)   p_kst 8.620690e-06   p_cons 2.368888e-01   p_joint 8.620690e-06

Joint ci ratio: 1.181918e+00	ci left: 4.098630e-06	ci right 1.571820e-05	k: 10	n:1170000
Cons ci ratio: 6.504849e-03	ci left: 2.360991e-01	ci right 2.376407e-01	k: 277137	n:1170000
KS ci ratio: 1.181918e+00	ci left: 4.098630e-06	ci right 1.571820e-05	k: 10	n:1170000
KLK2   1170000 perm   813 sec   (1440 perm/sec)   p_kst 8.547009e-06   p_cons 2.368692e-01   p_joint 8.547009e-06

Joint ci ratio: 1.131600e+00	ci left: 4.653535e-06	ci right 1.667963e-05	k: 11	n:1180000
Cons ci ratio: 6.477238e-03	ci left: 2.361018e-01	ci right 2.376368e-01	k: 279505	n:1180000
KS ci ratio: 1.181918e+00	ci left: 4.063896e-06	ci right 1.558499e-05	k: 10	n:1180000
KLK2   1180000 perm   825 sec   (1431 perm/sec)   p_kst 8.474576e-06   p_cons 2.368686e-01   p_joint 9.322034e-06

Joint ci ratio: 1.131600e+00	ci left: 4.614429e-06	ci right 1.653947e-05	k: 11	n:1190000
Cons ci ratio: 6.450125e-03	ci left: 2.360960e-01	ci right 2.376246e-01	k: 281863	n:1190000
KS ci ratio: 1.181919e+00	ci left: 4.029746e-06	ci right 1.545403e-05	k: 10	n:1190000
KLK2   1190000 perm   837 sec   (1422 perm/sec)   p_kst 8.403361e-06   p_cons 2.368597e-01   p_joint 9.243697e-06

Joint ci ratio: 1.131600e+00	ci left: 4.575976e-06	ci right 1.640164e-05	k: 11	n:1200000
Cons ci ratio: 6.423454e-03	ci left: 2.360845e-01	ci right 2.376067e-01	k: 284214	n:1200000
KS ci ratio: 1.181919e+00	ci left: 3.996164e-06	ci right 1.532524e-05	k: 10	n:1200000
KLK2   1200000 perm   849 sec   (1413 perm/sec)   p_kst 8.333333e-06   p_cons 2.368450e-01   p_joint 9.166667e-06

Joint ci ratio: 1.131600e+00	ci left: 4.538158e-06	ci right 1.626609e-05	k: 11	n:1210000
Cons ci ratio: 6.396760e-03	ci left: 2.360931e-01	ci right 2.376090e-01	k: 286589	n:1210000
KS ci ratio: 1.181919e+00	ci left: 3.963138e-06	ci right 1.519859e-05	k: 10	n:1210000
KLK2   1210000 perm   862 sec   (1404 perm/sec)   p_kst 8.264463e-06   p_cons 2.368504e-01   p_joint 9.090909e-06

Joint ci ratio: 1.131600e+00	ci left: 4.500959e-06	ci right 1.613276e-05	k: 11	n:1220000
Cons ci ratio: 6.369776e-03	ci left: 2.361367e-01	ci right 2.376465e-01	k: 289007	n:1220000
KS ci ratio: 1.181919e+00	ci left: 3.930653e-06	ci right 1.507401e-05	k: 10	n:1220000
KLK2   1220000 perm   874 sec   (1396 perm/sec)   p_kst 8.196721e-06   p_cons 2.368910e-01   p_joint 9.016393e-06

Joint ci ratio: 1.131601e+00	ci left: 4.464366e-06	ci right 1.600160e-05	k: 11	n:1230000
Cons ci ratio: 6.343300e-03	ci left: 2.361699e-01	ci right 2.376736e-01	k: 291413	n:1230000
KS ci ratio: 1.181919e+00	ci left: 3.898697e-06	ci right 1.495146e-05	k: 10	n:1230000
KLK2   1230000 perm   886 sec   (1388 perm/sec)   p_kst 8.130081e-06   p_cons 2.369211e-01   p_joint 8.943089e-06

Joint ci ratio: 1.131601e+00	ci left: 4.428363e-06	ci right 1.587256e-05	k: 11	n:1240000
Cons ci ratio: 6.317223e-03	ci left: 2.361986e-01	ci right 2.376962e-01	k: 293814	n:1240000
KS ci ratio: 1.181919e+00	ci left: 3.867256e-06	ci right 1.483088e-05	k: 10	n:1240000
KLK2   1240000 perm   899 sec   (1379 perm/sec)   p_kst 8.064516e-06   p_cons 2.369468e-01   p_joint 8.870968e-06

Joint ci ratio: 1.131601e+00	ci left: 4.392936e-06	ci right 1.574558e-05	k: 11	n:1250000
Cons ci ratio: 6.291799e-03	ci left: 2.362076e-01	ci right 2.376992e-01	k: 296191	n:1250000
KS ci ratio: 1.181919e+00	ci left: 3.836317e-06	ci right 1.471224e-05	k: 10	n:1250000
KLK2   1250000 perm   912 sec   (1371 perm/sec)   p_kst 8.000000e-06   p_cons 2.369528e-01   p_joint 8.800000e-06

Joint ci ratio: 1.131601e+00	ci left: 4.358072e-06	ci right 1.562061e-05	k: 11	n:1260000
Cons ci ratio: 6.267518e-03	ci left: 2.361681e-01	ci right 2.376537e-01	k: 298507	n:1260000
KS ci ratio: 1.181919e+00	ci left: 3.805870e-06	ci right 1.459547e-05	k: 10	n:1260000
KLK2   1260000 perm   925 sec   (1362 perm/sec)   p_kst 7.936508e-06   p_cons 2.369103e-01   p_joint 8.730159e-06

Joint ci ratio: 1.131601e+00	ci left: 4.323756e-06	ci right 1.549762e-05	k: 11	n:1270000
Cons ci ratio: 6.243516e-03	ci left: 2.361293e-01	ci right 2.376089e-01	k: 300823	n:1270000
KS ci ratio: 1.181919e+00	ci left: 3.775903e-06	ci right 1.448055e-05	k: 10	n:1270000
KLK2   1270000 perm   939 sec   (1353 perm/sec)   p_kst 7.874016e-06   p_cons 2.368685e-01   p_joint 8.661417e-06

Joint ci ratio: 1.131601e+00	ci left: 4.289977e-06	ci right 1.537654e-05	k: 11	n:1280000
Cons ci ratio: 6.219331e-03	ci left: 2.361176e-01	ci right 2.375914e-01	k: 303173	n:1280000
KS ci ratio: 1.181919e+00	ci left: 3.746404e-06	ci right 1.436742e-05	k: 10	n:1280000
KLK2   1280000 perm   952 sec   (1345 perm/sec)   p_kst 7.812500e-06   p_cons 2.368539e-01   p_joint 8.593750e-06

Joint ci ratio: 1.131601e+00	ci left: 4.256721e-06	ci right 1.525734e-05	k: 11	n:1290000
Cons ci ratio: 6.195398e-03	ci left: 2.361076e-01	ci right 2.375757e-01	k: 305525	n:1290000
KS ci ratio: 1.181919e+00	ci left: 3.717362e-06	ci right 1.425604e-05	k: 10	n:1290000
KLK2   1290000 perm   965 sec   (1337 perm/sec)   p_kst 7.751938e-06   p_cons 2.368411e-01   p_joint 8.527132e-06

Joint ci ratio: 1.131601e+00	ci left: 4.223977e-06	ci right 1.513998e-05	k: 11	n:1300000
Cons ci ratio: 6.172093e-03	ci left: 2.360771e-01	ci right 2.375395e-01	k: 307850	n:1300000
KS ci ratio: 1.181919e+00	ci left: 3.688767e-06	ci right 1.414638e-05	k: 10	n:1300000
KLK2   1300000 perm   978 sec   (1329 perm/sec)   p_kst 7.692308e-06   p_cons 2.368077e-01   p_joint 8.461538e-06

Joint ci ratio: 1.131601e+00	ci left: 4.191733e-06	ci right 1.502441e-05	k: 11	n:1310000
Cons ci ratio: 6.147674e-03	ci left: 2.361279e-01	ci right 2.375847e-01	k: 310281	n:1310000
KS ci ratio: 1.181919e+00	ci left: 3.660608e-06	ci right 1.403839e-05	k: 10	n:1310000
KLK2   1310000 perm   991 sec   (1322 perm/sec)   p_kst 7.633588e-06   p_cons 2.368557e-01   p_joint 8.396947e-06

Joint ci ratio: 1.131601e+00	ci left: 4.159977e-06	ci right 1.491059e-05	k: 11	n:1320000
Cons ci ratio: 6.123734e-03	ci left: 2.361665e-01	ci right 2.376179e-01	k: 312697	n:1320000
KS ci ratio: 1.181919e+00	ci left: 3.632876e-06	ci right 1.393204e-05	k: 10	n:1320000
KLK2   1320000 perm   1004 sec   (1314 perm/sec)   p_kst 7.575758e-06   p_cons 2.368917e-01   p_joint 8.333333e-06

Joint ci ratio: 8.554071e-01	ci left: 9.185376e-06	ci right 2.322425e-05	k: 20	n:1330000
Cons ci ratio: 6.101036e-03	ci left: 2.361476e-01	ci right 2.375934e-01	k: 315037	n:1330000
KS ci ratio: 1.131601e+00	ci left: 4.128699e-06	ci right 1.479848e-05	k: 11	n:1330000
KLK2   1330000 perm   1018 sec   (1306 perm/sec)   p_kst 8.270677e-06   p_cons 2.368699e-01   p_joint 1.503759e-05

Joint ci ratio: 8.993030e-01	ci left: 7.961169e-06	ci right 2.122959e-05	k: 18	n:1340000
Cons ci ratio: 6.078099e-03	ci left: 2.361579e-01	ci right 2.375984e-01	k: 317416	n:1340000
KS ci ratio: 1.131601e+00	ci left: 4.097888e-06	ci right 1.468804e-05	k: 11	n:1340000
KLK2   1340000 perm   1032 sec   (1299 perm/sec)   p_kst 8.208955e-06   p_cons 2.368776e-01   p_joint 1.343284e-05

Joint ci ratio: 8.993030e-01	ci left: 7.902197e-06	ci right 2.107233e-05	k: 18	n:1350000
Cons ci ratio: 6.055705e-03	ci left: 2.361512e-01	ci right 2.375863e-01	k: 319772	n:1350000
KS ci ratio: 1.131601e+00	ci left: 4.067533e-06	ci right 1.457924e-05	k: 11	n:1350000
KLK2   1350000 perm   1045 sec   (1291 perm/sec)   p_kst 8.148148e-06   p_cons 2.368681e-01   p_joint 1.333333e-05

Joint ci ratio: 8.765319e-01	ci left: 8.411227e-06	ci right 2.181672e-05	k: 19	n:1360000
Cons ci ratio: 6.033396e-03	ci left: 2.361540e-01	ci right 2.375839e-01	k: 322141	n:1360000
KS ci ratio: 1.131601e+00	ci left: 4.037625e-06	ci right 1.447204e-05	k: 11	n:1360000
KLK2   1360000 perm   1059 sec   (1284 perm/sec)   p_kst 8.088235e-06   p_cons 2.368684e-01   p_joint 1.397059e-05

Joint ci ratio: 8.765319e-01	ci left: 8.349831e-06	ci right 2.165747e-05	k: 19	n:1370000
Cons ci ratio: 6.010228e-03	ci left: 2.362232e-01	ci right 2.376480e-01	k: 324601	n:1370000
KS ci ratio: 1.131601e+00	ci left: 4.008153e-06	ci right 1.436641e-05	k: 11	n:1370000
KLK2   1370000 perm   1073 sec   (1277 perm/sec)   p_kst 8.029197e-06   p_cons 2.369350e-01   p_joint 1.386861e-05

Joint ci ratio: 8.765320e-01	ci left: 8.289325e-06	ci right 2.150054e-05	k: 19	n:1380000
Cons ci ratio: 5.988081e-03	ci left: 2.362458e-01	ci right 2.376654e-01	k: 326998	n:1380000
KS ci ratio: 1.131601e+00	ci left: 3.979108e-06	ci right 1.426230e-05	k: 11	n:1380000
KLK2   1380000 perm   1087 sec   (1269 perm/sec)   p_kst 7.971014e-06   p_cons 2.369551e-01   p_joint 1.376812e-05

Joint ci ratio: 9.507335e-01	ci left: 6.579426e-06	ci right 1.869274e-05	k: 16	n:1390000
Cons ci ratio: 5.966805e-03	ci left: 2.362300e-01	ci right 2.376445e-01	k: 329342	n:1390000
KS ci ratio: 1.131601e+00	ci left: 3.950481e-06	ci right 1.415970e-05	k: 11	n:1390000
KLK2   1390000 perm   1101 sec   (1263 perm/sec)   p_kst 7.913669e-06   p_cons 2.369367e-01   p_joint 1.151079e-05

Joint ci ratio: 9.507335e-01	ci left: 6.532430e-06	ci right 1.855922e-05	k: 16	n:1400000
Cons ci ratio: 5.944968e-03	ci left: 2.362622e-01	ci right 2.376717e-01	k: 331753	n:1400000
KS ci ratio: 1.131601e+00	ci left: 3.922264e-06	ci right 1.405856e-05	k: 11	n:1400000
KLK2   1400000 perm   1115 sec   (1256 perm/sec)   p_kst 7.857143e-06   p_cons 2.369664e-01   p_joint 1.142857e-05

Joint ci ratio: 9.507336e-01	ci left: 6.486100e-06	ci right 1.842759e-05	k: 16	n:1410000
Cons ci ratio: 5.924485e-03	ci left: 2.362260e-01	ci right 2.376304e-01	k: 334068	n:1410000
KS ci ratio: 1.131601e+00	ci left: 3.894446e-06	ci right 1.395885e-05	k: 11	n:1410000
KLK2   1410000 perm   1129 sec   (1249 perm/sec)   p_kst 7.801418e-06   p_cons 2.369277e-01   p_joint 1.134752e-05

Joint ci ratio: 9.507336e-01	ci left: 6.440423e-06	ci right 1.829782e-05	k: 16	n:1420000
Cons ci ratio: 5.903521e-03	ci left: 2.362325e-01	ci right 2.376319e-01	k: 336443	n:1420000
KS ci ratio: 1.131601e+00	ci left: 3.867020e-06	ci right 1.386055e-05	k: 11	n:1420000
KLK2   1420000 perm   1143 sec   (1242 perm/sec)   p_kst 7.746479e-06   p_cons 2.369317e-01   p_joint 1.126761e-05

Joint ci ratio: 9.507337e-01	ci left: 6.395385e-06	ci right 1.816986e-05	k: 16	n:1430000
Cons ci ratio: 5.882335e-03	ci left: 2.362662e-01	ci right 2.376608e-01	k: 338857	n:1430000
KS ci ratio: 1.131601e+00	ci left: 3.839978e-06	ci right 1.376362e-05	k: 11	n:1430000
KLK2   1430000 perm   1158 sec   (1235 perm/sec)   p_kst 7.692308e-06   p_cons 2.369629e-01   p_joint 1.118881e-05

Joint ci ratio: 9.507337e-01	ci left: 6.350973e-06	ci right 1.804369e-05	k: 16	n:1440000
Cons ci ratio: 5.862479e-03	ci left: 2.362314e-01	ci right 2.376210e-01	k: 341173	n:1440000
KS ci ratio: 1.131601e+00	ci left: 3.813312e-06	ci right 1.366804e-05	k: 11	n:1440000
KLK2   1440000 perm   1172 sec   (1228 perm/sec)   p_kst 7.638889e-06   p_cons 2.369257e-01   p_joint 1.111111e-05

Joint ci ratio: 9.507337e-01	ci left: 6.307173e-06	ci right 1.791925e-05	k: 16	n:1450000
Cons ci ratio: 5.841986e-03	ci left: 2.362488e-01	ci right 2.376337e-01	k: 343564	n:1450000
KS ci ratio: 1.131601e+00	ci left: 3.787013e-06	ci right 1.357378e-05	k: 11	n:1450000
KLK2   1450000 perm   1187 sec   (1222 perm/sec)   p_kst 7.586207e-06   p_cons 2.369407e-01   p_joint 1.103448e-05

Joint ci ratio: 9.507338e-01	ci left: 6.263973e-06	ci right 1.779651e-05	k: 16	n:1460000
Cons ci ratio: 5.821233e-03	ci left: 2.362954e-01	ci right 2.376756e-01	k: 345998	n:1460000
KS ci ratio: 1.131601e+00	ci left: 3.761075e-06	ci right 1.348081e-05	k: 11	n:1460000
KLK2   1460000 perm   1201 sec   (1215 perm/sec)   p_kst 7.534247e-06   p_cons 2.369849e-01   p_joint 1.095890e-05

Joint ci ratio: 9.507338e-01	ci left: 6.221361e-06	ci right 1.767545e-05	k: 16	n:1470000
Cons ci ratio: 5.801659e-03	ci left: 2.362815e-01	ci right 2.376570e-01	k: 348344	n:1470000
KS ci ratio: 1.131602e+00	ci left: 3.735489e-06	ci right 1.338910e-05	k: 11	n:1470000
KLK2   1470000 perm   1216 sec   (1209 perm/sec)   p_kst 7.482993e-06   p_cons 2.369687e-01   p_joint 1.088435e-05

Joint ci ratio: 9.507339e-01	ci left: 6.179325e-06	ci right 1.755602e-05	k: 16	n:1480000
Cons ci ratio: 5.782779e-03	ci left: 2.362368e-01	ci right 2.376075e-01	k: 350644	n:1480000
KS ci ratio: 1.131602e+00	ci left: 3.710249e-06	ci right 1.329864e-05	k: 11	n:1480000
KLK2   1480000 perm   1231 sec   (1202 perm/sec)   p_kst 7.432432e-06   p_cons 2.369216e-01   p_joint 1.081081e-05

Joint ci ratio: 9.507339e-01	ci left: 6.137853e-06	ci right 1.743820e-05	k: 16	n:1490000
Cons ci ratio: 5.763076e-03	ci left: 2.362557e-01	ci right 2.376218e-01	k: 353038	n:1490000
KS ci ratio: 1.131602e+00	ci left: 3.685348e-06	ci right 1.320938e-05	k: 11	n:1490000
KLK2   1490000 perm   1246 sec   (1196 perm/sec)   p_kst 7.382550e-06   p_cons 2.369383e-01   p_joint 1.073826e-05

Joint ci ratio: 9.239470e-01	ci left: 6.602098e-06	ci right 1.814570e-05	k: 17	n:1500000
Cons ci ratio: 5.743848e-03	ci left: 2.362571e-01	ci right 2.376186e-01	k: 355406	n:1500000
KS ci ratio: 1.087207e+00	ci left: 4.133723e-06	ci right 1.397435e-05	k: 12	n:1500000
KLK2   1500000 perm   1261 sec   (1190 perm/sec)   p_kst 8.000000e-06   p_cons 2.369373e-01   p_joint 1.133333e-05

Joint ci ratio: 9.239470e-01	ci left: 6.558375e-06	ci right 1.802553e-05	k: 17	n:1510000
Cons ci ratio: 5.724738e-03	ci left: 2.362630e-01	ci right 2.376201e-01	k: 357781	n:1510000
KS ci ratio: 1.087207e+00	ci left: 4.106348e-06	ci right 1.388180e-05	k: 12	n:1510000
KLK2   1510000 perm   1276 sec   (1184 perm/sec)   p_kst 7.947020e-06   p_cons 2.369411e-01   p_joint 1.125828e-05

Joint ci ratio: 9.239471e-01	ci left: 6.515228e-06	ci right 1.790694e-05	k: 17	n:1520000
Cons ci ratio: 5.705942e-03	ci left: 2.362611e-01	ci right 2.376136e-01	k: 360144	n:1520000
KS ci ratio: 1.087207e+00	ci left: 4.079332e-06	ci right 1.379048e-05	k: 12	n:1520000
KLK2   1520000 perm   1290 sec   (1178 perm/sec)   p_kst 7.894737e-06   p_cons 2.369368e-01   p_joint 1.118421e-05

Joint ci ratio: 9.239471e-01	ci left: 6.472645e-06	ci right 1.778991e-05	k: 17	n:1530000
Cons ci ratio: 5.688060e-03	ci left: 2.362127e-01	ci right 2.375608e-01	k: 362436	n:1530000
KS ci ratio: 1.087207e+00	ci left: 4.052670e-06	ci right 1.370034e-05	k: 12	n:1530000
KLK2   1530000 perm   1305 sec   (1172 perm/sec)   p_kst 7.843137e-06   p_cons 2.368863e-01   p_joint 1.111111e-05

Joint ci ratio: 9.239472e-01	ci left: 6.430614e-06	ci right 1.767439e-05	k: 17	n:1540000
Cons ci ratio: 5.669541e-03	ci left: 2.362163e-01	ci right 2.375600e-01	k: 364807	n:1540000
KS ci ratio: 1.087207e+00	ci left: 4.026354e-06	ci right 1.361138e-05	k: 12	n:1540000
KLK2   1540000 perm   1321 sec   (1166 perm/sec)   p_kst 7.792208e-06   p_cons 2.368877e-01   p_joint 1.103896e-05

Joint ci ratio: 9.239472e-01	ci left: 6.389126e-06	ci right 1.756036e-05	k: 17	n:1550000
Cons ci ratio: 5.650747e-03	ci left: 2.362489e-01	ci right 2.375882e-01	k: 367223	n:1550000
KS ci ratio: 1.087207e+00	ci left: 4.000377e-06	ci right 1.352356e-05	k: 12	n:1550000
KLK2   1550000 perm   1336 sec   (1160 perm/sec)   p_kst 7.741935e-06   p_cons 2.369181e-01   p_joint 1.096774e-05

Joint ci ratio: 9.239472e-01	ci left: 6.348170e-06	ci right 1.744779e-05	k: 17	n:1560000
Cons ci ratio: 5.632529e-03	ci left: 2.362560e-01	ci right 2.375911e-01	k: 369600	n:1560000
KS ci ratio: 1.087208e+00	ci left: 3.974734e-06	ci right 1.343687e-05	k: 12	n:1560000
KLK2   1560000 perm   1352 sec   (1154 perm/sec)   p_kst 7.692308e-06   p_cons 2.369231e-01   p_joint 1.089744e-05

Joint ci ratio: 9.239473e-01	ci left: 6.307736e-06	ci right 1.733666e-05	k: 17	n:1570000
Cons ci ratio: 5.614792e-03	ci left: 2.362434e-01	ci right 2.375742e-01	k: 371946	n:1570000
KS ci ratio: 1.087208e+00	ci left: 3.949417e-06	ci right 1.335129e-05	k: 12	n:1570000
KLK2   1570000 perm   1367 sec   (1148 perm/sec)   p_kst 7.643312e-06   p_cons 2.369083e-01   p_joint 1.082803e-05

Joint ci ratio: 9.239473e-01	ci left: 6.267814e-06	ci right 1.722694e-05	k: 17	n:1580000
Cons ci ratio: 5.596389e-03	ci left: 2.362846e-01	ci right 2.376113e-01	k: 374377	n:1580000
KS ci ratio: 1.087208e+00	ci left: 3.924421e-06	ci right 1.326679e-05	k: 12	n:1580000
KLK2   1580000 perm   1382 sec   (1143 perm/sec)   p_kst 7.594937e-06   p_cons 2.369475e-01   p_joint 1.075949e-05

Joint ci ratio: 9.239473e-01	ci left: 6.228393e-06	ci right 1.711859e-05	k: 17	n:1590000
Cons ci ratio: 5.578282e-03	ci left: 2.363178e-01	ci right 2.376404e-01	k: 376796	n:1590000
KS ci ratio: 1.087208e+00	ci left: 3.899739e-06	ci right 1.318335e-05	k: 12	n:1590000
KLK2   1590000 perm   1398 sec   (1137 perm/sec)   p_kst 7.547170e-06   p_cons 2.369786e-01   p_joint 1.069182e-05

Joint ci ratio: 9.239474e-01	ci left: 6.189466e-06	ci right 1.701160e-05	k: 17	n:1600000
Cons ci ratio: 5.561330e-03	ci left: 2.362869e-01	ci right 2.376053e-01	k: 379113	n:1600000
KS ci ratio: 1.087208e+00	ci left: 3.875365e-06	ci right 1.310095e-05	k: 12	n:1600000
KLK2   1600000 perm   1414 sec   (1132 perm/sec)   p_kst 7.500000e-06   p_cons 2.369456e-01   p_joint 1.062500e-05

Joint ci ratio: 9.239474e-01	ci left: 6.151022e-06	ci right 1.690594e-05	k: 17	n:1610000
Cons ci ratio: 5.543913e-03	ci left: 2.362968e-01	ci right 2.376110e-01	k: 381495	n:1610000
KS ci ratio: 1.087208e+00	ci left: 3.851295e-06	ci right 1.301958e-05	k: 12	n:1610000
KLK2   1610000 perm   1429 sec   (1126 perm/sec)   p_kst 7.453416e-06   p_cons 2.369534e-01   p_joint 1.055901e-05

Joint ci ratio: 9.239474e-01	ci left: 6.113053e-06	ci right 1.680158e-05	k: 17	n:1620000
Cons ci ratio: 5.526582e-03	ci left: 2.363114e-01	ci right 2.376216e-01	k: 383885	n:1620000
KS ci ratio: 1.087208e+00	ci left: 3.827521e-06	ci right 1.293921e-05	k: 12	n:1620000
KLK2   1620000 perm   1445 sec   (1121 perm/sec)   p_kst 7.407407e-06   p_cons 2.369660e-01   p_joint 1.049383e-05

Joint ci ratio: 9.239475e-01	ci left: 6.075549e-06	ci right 1.669850e-05	k: 17	n:1630000
Cons ci ratio: 5.510096e-03	ci left: 2.362812e-01	ci right 2.375873e-01	k: 386202	n:1630000
KS ci ratio: 1.087208e+00	ci left: 3.804039e-06	ci right 1.285983e-05	k: 12	n:1630000
KLK2   1630000 perm   1461 sec   (1115 perm/sec)   p_kst 7.361963e-06   p_cons 2.369337e-01   p_joint 1.042945e-05

Joint ci ratio: 9.239475e-01	ci left: 6.038503e-06	ci right 1.659668e-05	k: 17	n:1640000
Cons ci ratio: 5.493172e-03	ci left: 2.362896e-01	ci right 2.375918e-01	k: 388582	n:1640000
KS ci ratio: 1.087208e+00	ci left: 3.780844e-06	ci right 1.278142e-05	k: 12	n:1640000
KLK2   1640000 perm   1478 sec   (1110 perm/sec)   p_kst 7.317073e-06   p_cons 2.369402e-01   p_joint 1.036585e-05

Joint ci ratio: 9.239475e-01	ci left: 6.001906e-06	ci right 1.649610e-05	k: 17	n:1650000
Cons ci ratio: 5.476330e-03	ci left: 2.363029e-01	ci right 2.376011e-01	k: 390970	n:1650000
KS ci ratio: 1.087208e+00	ci left: 3.757930e-06	ci right 1.270396e-05	k: 12	n:1650000
KLK2   1650000 perm   1493 sec   (1105 perm/sec)   p_kst 7.272727e-06   p_cons 2.369515e-01   p_joint 1.030303e-05

Joint ci ratio: 9.239476e-01	ci left: 5.965750e-06	ci right 1.639672e-05	k: 17	n:1660000
Cons ci ratio: 5.459943e-03	ci left: 2.362961e-01	ci right 2.375904e-01	k: 393325	n:1660000
KS ci ratio: 1.087208e+00	ci left: 3.735292e-06	ci right 1.262743e-05	k: 12	n:1660000
KLK2   1660000 perm   1510 sec   (1100 perm/sec)   p_kst 7.228916e-06   p_cons 2.369428e-01   p_joint 1.024096e-05

Joint ci ratio: 9.239476e-01	ci left: 5.930027e-06	ci right 1.629854e-05	k: 17	n:1670000
Cons ci ratio: 5.444017e-03	ci left: 2.362685e-01	ci right 2.375588e-01	k: 395645	n:1670000
KS ci ratio: 1.087208e+00	ci left: 3.712925e-06	ci right 1.255181e-05	k: 12	n:1670000
KLK2   1670000 perm   1526 sec   (1094 perm/sec)   p_kst 7.185629e-06   p_cons 2.369132e-01   p_joint 1.017964e-05

Joint ci ratio: 9.239476e-01	ci left: 5.894729e-06	ci right 1.620153e-05	k: 17	n:1680000
Cons ci ratio: 5.428211e-03	ci left: 2.362424e-01	ci right 2.375288e-01	k: 397967	n:1680000
KS ci ratio: 1.087208e+00	ci left: 3.690824e-06	ci right 1.247710e-05	k: 12	n:1680000
KLK2   1680000 perm   1542 sec   (1089 perm/sec)   p_kst 7.142857e-06   p_cons 2.368851e-01   p_joint 1.011905e-05

Joint ci ratio: 9.239477e-01	ci left: 5.859849e-06	ci right 1.610566e-05	k: 17	n:1690000
Cons ci ratio: 5.412250e-03	ci left: 2.362361e-01	ci right 2.375187e-01	k: 400322	n:1690000
KS ci ratio: 1.087208e+00	ci left: 3.668985e-06	ci right 1.240327e-05	k: 12	n:1690000
KLK2   1690000 perm   1559 sec   (1084 perm/sec)   p_kst 7.100592e-06   p_cons 2.368769e-01   p_joint 1.005917e-05

Joint ci ratio: 9.239477e-01	ci left: 5.825379e-06	ci right 1.601092e-05	k: 17	n:1700000
Cons ci ratio: 5.396377e-03	ci left: 2.362334e-01	ci right 2.375122e-01	k: 402683	n:1700000
KS ci ratio: 1.087208e+00	ci left: 3.647402e-06	ci right 1.233031e-05	k: 12	n:1700000
KLK2   1700000 perm   1575 sec   (1079 perm/sec)   p_kst 7.058824e-06   p_cons 2.368724e-01   p_joint 1.000000e-05

Joint ci ratio: 9.239477e-01	ci left: 5.791312e-06	ci right 1.591729e-05	k: 17	n:1710000
Cons ci ratio: 5.380712e-03	ci left: 2.362261e-01	ci right 2.375011e-01	k: 405036	n:1710000
KS ci ratio: 1.087208e+00	ci left: 3.626072e-06	ci right 1.225820e-05	k: 12	n:1710000
KLK2   1710000 perm   1592 sec   (1074 perm/sec)   p_kst 7.017544e-06   p_cons 2.368632e-01   p_joint 9.941520e-06

Joint ci ratio: 9.239478e-01	ci left: 5.757642e-06	ci right 1.582475e-05	k: 17	n:1720000
Cons ci ratio: 5.365277e-03	ci left: 2.362125e-01	ci right 2.374838e-01	k: 407378	n:1720000
KS ci ratio: 1.087208e+00	ci left: 3.604991e-06	ci right 1.218694e-05	k: 12	n:1720000
KLK2   1720000 perm   1609 sec   (1069 perm/sec)   p_kst 6.976744e-06   p_cons 2.368477e-01   p_joint 9.883721e-06

Joint ci ratio: 9.239478e-01	ci left: 5.724361e-06	ci right 1.573328e-05	k: 17	n:1730000
Cons ci ratio: 5.349478e-03	ci left: 2.362325e-01	ci right 2.375002e-01	k: 409778	n:1730000
KS ci ratio: 1.087208e+00	ci left: 3.584152e-06	ci right 1.211649e-05	k: 12	n:1730000
KLK2   1730000 perm   1626 sec   (1064 perm/sec)   p_kst 6.936416e-06   p_cons 2.368659e-01   p_joint 9.826590e-06

Joint ci ratio: 9.239478e-01	ci left: 5.691462e-06	ci right 1.564285e-05	k: 17	n:1740000
Cons ci ratio: 5.334327e-03	ci left: 2.362179e-01	ci right 2.374819e-01	k: 412118	n:1740000
KS ci ratio: 1.087208e+00	ci left: 3.563554e-06	ci right 1.204686e-05	k: 12	n:1740000
KLK2   1740000 perm   1643 sec   (1059 perm/sec)   p_kst 6.896552e-06   p_cons 2.368494e-01   p_joint 9.770115e-06

Joint ci ratio: 9.239478e-01	ci left: 5.658939e-06	ci right 1.555347e-05	k: 17	n:1750000
Cons ci ratio: 5.318320e-03	ci left: 2.362702e-01	ci right 2.375307e-01	k: 414575	n:1750000
KS ci ratio: 1.087208e+00	ci left: 3.543191e-06	ci right 1.197802e-05	k: 12	n:1750000
KLK2   1750000 perm   1660 sec   (1054 perm/sec)   p_kst 6.857143e-06   p_cons 2.369000e-01   p_joint 9.714286e-06

Joint ci ratio: 9.239479e-01	ci left: 5.626786e-06	ci right 1.546510e-05	k: 17	n:1760000
Cons ci ratio: 5.303382e-03	ci left: 2.362589e-01	ci right 2.375158e-01	k: 416921	n:1760000
KS ci ratio: 1.087208e+00	ci left: 3.523059e-06	ci right 1.190996e-05	k: 12	n:1760000
KLK2   1760000 perm   1677 sec   (1049 perm/sec)   p_kst 6.818182e-06   p_cons 2.368869e-01   p_joint 9.659091e-06

Joint ci ratio: 9.239479e-01	ci left: 5.594996e-06	ci right 1.537772e-05	k: 17	n:1770000
Cons ci ratio: 5.288420e-03	ci left: 2.362580e-01	ci right 2.375113e-01	k: 419285	n:1770000
KS ci ratio: 1.087208e+00	ci left: 3.503155e-06	ci right 1.184267e-05	k: 12	n:1770000
KLK2   1770000 perm   1694 sec   (1045 perm/sec)   p_kst 6.779661e-06   p_cons 2.368842e-01   p_joint 9.604520e-06

Joint ci ratio: 9.239479e-01	ci left: 5.563564e-06	ci right 1.529133e-05	k: 17	n:1780000
Cons ci ratio: 5.273534e-03	ci left: 2.362604e-01	ci right 2.375101e-01	k: 421655	n:1780000
KS ci ratio: 1.087208e+00	ci left: 3.483474e-06	ci right 1.177614e-05	k: 12	n:1780000
KLK2   1780000 perm   1712 sec   (1040 perm/sec)   p_kst 6.741573e-06   p_cons 2.368848e-01   p_joint 9.550562e-06

Joint ci ratio: 9.239480e-01	ci left: 5.532482e-06	ci right 1.520590e-05	k: 17	n:1790000
Cons ci ratio: 5.258408e-03	ci left: 2.362879e-01	ci right 2.375342e-01	k: 424070	n:1790000
KS ci ratio: 1.087208e+00	ci left: 3.464013e-06	ci right 1.171035e-05	k: 12	n:1790000
KLK2   1790000 perm   1729 sec   (1035 perm/sec)   p_kst 6.703911e-06   p_cons 2.369106e-01   p_joint 9.497207e-06

Joint ci ratio: 9.239480e-01	ci left: 5.501746e-06	ci right 1.512143e-05	k: 17	n:1800000
Cons ci ratio: 5.243822e-03	ci left: 2.362868e-01	ci right 2.375296e-01	k: 426434	n:1800000
KS ci ratio: 1.087208e+00	ci left: 3.444769e-06	ci right 1.164530e-05	k: 12	n:1800000
KLK2   1800000 perm   1748 sec   (1030 perm/sec)   p_kst 6.666667e-06   p_cons 2.369078e-01   p_joint 9.444444e-06

Joint ci ratio: 8.993047e-01	ci left: 5.893900e-06	ci right 1.571695e-05	k: 18	n:1810000
Cons ci ratio: 5.229637e-03	ci left: 2.362664e-01	ci right 2.375057e-01	k: 428763	n:1810000
KS ci ratio: 1.047660e+00	ci left: 3.824289e-06	ci right 1.228196e-05	k: 13	n:1810000
KLK2   1810000 perm   1766 sec   (1025 perm/sec)   p_kst 7.182320e-06   p_cons 2.368856e-01   p_joint 9.944751e-06

Joint ci ratio: 8.765336e-01	ci left: 6.285309e-06	ci right 1.630262e-05	k: 19	n:1820000
Cons ci ratio: 5.215352e-03	ci left: 2.362610e-01	ci right 2.374970e-01	k: 431119	n:1820000
KS ci ratio: 1.012135e+00	ci left: 4.205462e-06	ci right 1.290635e-05	k: 14	n:1820000
KLK2   1820000 perm   1784 sec   (1020 perm/sec)   p_kst 7.692308e-06   p_cons 2.368786e-01   p_joint 1.043956e-05

Joint ci ratio: 8.765336e-01	ci left: 6.250963e-06	ci right 1.621353e-05	k: 19	n:1830000
Cons ci ratio: 5.201065e-03	ci left: 2.362639e-01	ci right 2.374965e-01	k: 433490	n:1830000
KS ci ratio: 1.012135e+00	ci left: 4.182482e-06	ci right 1.283583e-05	k: 14	n:1830000
KLK2   1830000 perm   1802 sec   (1016 perm/sec)   p_kst 7.650273e-06   p_cons 2.368798e-01   p_joint 1.038251e-05

Joint ci ratio: 8.765336e-01	ci left: 6.216990e-06	ci right 1.612542e-05	k: 19	n:1840000
Cons ci ratio: 5.187434e-03	ci left: 2.362293e-01	ci right 2.374585e-01	k: 435792	n:1840000
KS ci ratio: 1.012135e+00	ci left: 4.159751e-06	ci right 1.276607e-05	k: 14	n:1840000
KLK2   1840000 perm   1820 sec   (1011 perm/sec)   p_kst 7.608696e-06   p_cons 2.368435e-01   p_joint 1.032609e-05

Joint ci ratio: 8.765337e-01	ci left: 6.183385e-06	ci right 1.603825e-05	k: 19	n:1850000
Cons ci ratio: 5.173437e-03	ci left: 2.362281e-01	ci right 2.374539e-01	k: 438155	n:1850000
KS ci ratio: 1.012135e+00	ci left: 4.137266e-06	ci right 1.269706e-05	k: 14	n:1850000
KLK2   1850000 perm   1838 sec   (1007 perm/sec)   p_kst 7.567568e-06   p_cons 2.368405e-01   p_joint 1.027027e-05

Joint ci ratio: 8.765337e-01	ci left: 6.150141e-06	ci right 1.595203e-05	k: 19	n:1860000
Cons ci ratio: 5.159591e-03	ci left: 2.362241e-01	ci right 2.374466e-01	k: 440513	n:1860000
KS ci ratio: 1.012135e+00	ci left: 4.115022e-06	ci right 1.262880e-05	k: 14	n:1860000
KLK2   1860000 perm   1856 sec   (1002 perm/sec)   p_kst 7.526882e-06   p_cons 2.368349e-01   p_joint 1.021505e-05

Joint ci ratio: 8.554091e-01	ci left: 6.532910e-06	ci right 1.651780e-05	k: 20	n:1870000
Cons ci ratio: 5.145581e-03	ci left: 2.362395e-01	ci right 2.374587e-01	k: 442907	n:1870000
KS ci ratio: 1.012135e+00	ci left: 4.093017e-06	ci right 1.256126e-05	k: 14	n:1870000
KLK2   1870000 perm   1874 sec   (998 perm/sec)   p_kst 7.486631e-06   p_cons 2.368487e-01   p_joint 1.069519e-05

Joint ci ratio: 8.554091e-01	ci left: 6.498160e-06	ci right 1.642994e-05	k: 20	n:1880000
Cons ci ratio: 5.132327e-03	ci left: 2.362095e-01	ci right 2.374254e-01	k: 445216	n:1880000
KS ci ratio: 1.012135e+00	ci left: 4.071245e-06	ci right 1.249445e-05	k: 14	n:1880000
KLK2   1880000 perm   1892 sec   (993 perm/sec)   p_kst 7.446809e-06   p_cons 2.368170e-01   p_joint 1.063830e-05

Joint ci ratio: 8.554092e-01	ci left: 6.463779e-06	ci right 1.634301e-05	k: 20	n:1890000
Cons ci ratio: 5.118830e-03	ci left: 2.362041e-01	ci right 2.374168e-01	k: 447571	n:1890000
KS ci ratio: 1.012135e+00	ci left: 4.049704e-06	ci right 1.242834e-05	k: 14	n:1890000
KLK2   1890000 perm   1911 sec   (989 perm/sec)   p_kst 7.407407e-06   p_cons 2.368101e-01   p_joint 1.058201e-05

Joint ci ratio: 8.554092e-01	ci left: 6.429759e-06	ci right 1.625699e-05	k: 20	n:1900000
Cons ci ratio: 5.105610e-03	ci left: 2.361867e-01	ci right 2.373962e-01	k: 449903	n:1900000
KS ci ratio: 1.012135e+00	ci left: 4.028390e-06	ci right 1.236293e-05	k: 14	n:1900000
KLK2   1900000 perm   1929 sec   (985 perm/sec)   p_kst 7.368421e-06   p_cons 2.367911e-01   p_joint 1.052632e-05

Joint ci ratio: 8.554092e-01	ci left: 6.396095e-06	ci right 1.617188e-05	k: 20	n:1910000
Cons ci ratio: 5.092522e-03	ci left: 2.361674e-01	ci right 2.373737e-01	k: 452231	n:1910000
KS ci ratio: 1.012135e+00	ci left: 4.007299e-06	ci right 1.229820e-05	k: 14	n:1910000
KLK2   1910000 perm   1947 sec   (981 perm/sec)   p_kst 7.329843e-06   p_cons 2.367702e-01   p_joint 1.047120e-05

Joint ci ratio: 8.554092e-01	ci left: 6.362782e-06	ci right 1.608765e-05	k: 20	n:1920000
Cons ci ratio: 5.079651e-03	ci left: 2.361400e-01	ci right 2.373431e-01	k: 454543	n:1920000
KS ci ratio: 1.012135e+00	ci left: 3.986428e-06	ci right 1.223415e-05	k: 14	n:1920000
KLK2   1920000 perm   1966 sec   (977 perm/sec)   p_kst 7.291667e-06   p_cons 2.367411e-01   p_joint 1.041667e-05

Joint ci ratio: 8.554093e-01	ci left: 6.329814e-06	ci right 1.600430e-05	k: 20	n:1930000
Cons ci ratio: 5.066746e-03	ci left: 2.361222e-01	ci right 2.373221e-01	k: 456873	n:1930000
KS ci ratio: 1.012135e+00	ci left: 3.965772e-06	ci right 1.217076e-05	k: 14	n:1930000
KLK2   1930000 perm   1984 sec   (973 perm/sec)   p_kst 7.253886e-06   p_cons 2.367218e-01   p_joint 1.036269e-05

Joint ci ratio: 9.507352e-01	ci left: 4.714122e-06	ci right 1.339326e-05	k: 16	n:1940000
Cons ci ratio: 5.053917e-03	ci left: 2.361061e-01	ci right 2.373029e-01	k: 459206	n:1940000
KS ci ratio: 1.012135e+00	ci left: 3.945330e-06	ci right 1.210802e-05	k: 14	n:1940000
KLK2   1940000 perm   2004 sec   (968 perm/sec)   p_kst 7.216495e-06   p_cons 2.367041e-01   p_joint 8.247423e-06

Joint ci ratio: 9.507353e-01	ci left: 4.689947e-06	ci right 1.332458e-05	k: 16	n:1950000
Cons ci ratio: 5.040727e-03	ci left: 2.361230e-01	ci right 2.373167e-01	k: 461603	n:1950000
KS ci ratio: 1.012135e+00	ci left: 3.925098e-06	ci right 1.204593e-05	k: 14	n:1950000
KLK2   1950000 perm   2023 sec   (964 perm/sec)   p_kst 7.179487e-06   p_cons 2.367195e-01   p_joint 8.205128e-06

Joint ci ratio: 9.507353e-01	ci left: 4.666018e-06	ci right 1.325660e-05	k: 16	n:1960000
Cons ci ratio: 5.027761e-03	ci left: 2.361311e-01	ci right 2.373218e-01	k: 463983	n:1960000
KS ci ratio: 1.012136e+00	ci left: 3.905072e-06	ci right 1.198447e-05	k: 14	n:1960000
KLK2   1960000 perm   2042 sec   (960 perm/sec)   p_kst 7.142857e-06   p_cons 2.367260e-01   p_joint 8.163265e-06

Joint ci ratio: 9.507353e-01	ci left: 4.642333e-06	ci right 1.318931e-05	k: 16	n:1970000
Cons ci ratio: 5.014619e-03	ci left: 2.361588e-01	ci right 2.373465e-01	k: 466402	n:1970000
KS ci ratio: 1.012136e+00	ci left: 3.885249e-06	ci right 1.192364e-05	k: 14	n:1970000
KLK2   1970000 perm   2061 sec   (956 perm/sec)   p_kst 7.106599e-06   p_cons 2.367523e-01   p_joint 8.121827e-06

Joint ci ratio: 9.507353e-01	ci left: 4.618887e-06	ci right 1.312269e-05	k: 16	n:1980000
Cons ci ratio: 5.001762e-03	ci left: 2.361732e-01	ci right 2.373579e-01	k: 468795	n:1980000
KS ci ratio: 1.012136e+00	ci left: 3.865627e-06	ci right 1.186342e-05	k: 14	n:1980000
KLK2   1980000 perm   2080 sec   (952 perm/sec)   p_kst 7.070707e-06   p_cons 2.367652e-01   p_joint 8.080808e-06

Joint ci ratio: 9.507354e-01	ci left: 4.595676e-06	ci right 1.305675e-05	k: 16	n:1990000
Cons ci ratio: 4.988989e-03	ci left: 2.361884e-01	ci right 2.373702e-01	k: 471190	n:1990000
KS ci ratio: 1.012136e+00	ci left: 3.846201e-06	ci right 1.180380e-05	k: 14	n:1990000
KLK2   1990000 perm   2099 sec   (948 perm/sec)   p_kst 7.035176e-06   p_cons 2.367789e-01   p_joint 8.040201e-06

Joint ci ratio: 9.507354e-01	ci left: 4.572698e-06	ci right 1.299147e-05	k: 16	n:2000000
Cons ci ratio: 4.976679e-03	ci left: 2.361770e-01	ci right 2.373558e-01	k: 473532	n:2000000
KS ci ratio: 1.012136e+00	ci left: 3.826970e-06	ci right 1.174478e-05	k: 14	n:2000000
KLK2   2000000 perm   2119 sec   (944 perm/sec)   p_kst 7.000000e-06   p_cons 2.367660e-01   p_joint 8.000000e-06

Joint ci ratio: 9.507354e-01	ci left: 4.549948e-06	ci right 1.292683e-05	k: 16	n:2010000
Cons ci ratio: 4.964391e-03	ci left: 2.361707e-01	ci right 2.373465e-01	k: 475884	n:2010000
KS ci ratio: 1.012136e+00	ci left: 3.807931e-06	ci right 1.168635e-05	k: 14	n:2010000
KLK2   2010000 perm   2138 sec   (940 perm/sec)   p_kst 6.965174e-06   p_cons 2.367582e-01   p_joint 7.960199e-06

Joint ci ratio: 9.507354e-01	ci left: 4.527424e-06	ci right 1.286284e-05	k: 16	n:2020000
Cons ci ratio: 4.951718e-03	ci left: 2.361990e-01	ci right 2.373720e-01	k: 478306	n:2020000
KS ci ratio: 1.012136e+00	ci left: 3.789079e-06	ci right 1.162850e-05	k: 14	n:2020000
KLK2   2020000 perm   2158 sec   (936 perm/sec)   p_kst 6.930693e-06   p_cons 2.367851e-01   p_joint 7.920792e-06

Joint ci ratio: 9.507354e-01	ci left: 4.505121e-06	ci right 1.279947e-05	k: 16	n:2030000
Cons ci ratio: 4.939795e-03	ci left: 2.361794e-01	ci right 2.373494e-01	k: 480631	n:2030000
KS ci ratio: 1.012136e+00	ci left: 3.770414e-06	ci right 1.157121e-05	k: 14	n:2030000
KLK2   2030000 perm   2177 sec   (932 perm/sec)   p_kst 6.896552e-06   p_cons 2.367640e-01   p_joint 7.881773e-06

Joint ci ratio: 9.507355e-01	ci left: 4.483037e-06	ci right 1.273673e-05	k: 16	n:2040000
Cons ci ratio: 4.927524e-03	ci left: 2.361918e-01	ci right 2.373590e-01	k: 483021	n:2040000
KS ci ratio: 1.012136e+00	ci left: 3.751932e-06	ci right 1.151449e-05	k: 14	n:2040000
KLK2   2040000 perm   2197 sec   (929 perm/sec)   p_kst 6.862745e-06   p_cons 2.367750e-01   p_joint 7.843137e-06

Joint ci ratio: 9.507355e-01	ci left: 4.461169e-06	ci right 1.267460e-05	k: 16	n:2050000
Cons ci ratio: 4.915536e-03	ci left: 2.361899e-01	ci right 2.373542e-01	k: 485382	n:2050000
KS ci ratio: 1.012136e+00	ci left: 3.733629e-06	ci right 1.145833e-05	k: 14	n:2050000
KLK2   2050000 perm   2217 sec   (925 perm/sec)   p_kst 6.829268e-06   p_cons 2.367717e-01   p_joint 7.804878e-06

Joint ci ratio: 9.507355e-01	ci left: 4.439512e-06	ci right 1.261308e-05	k: 16	n:2060000
Cons ci ratio: 4.903285e-03	ci left: 2.362138e-01	ci right 2.373753e-01	k: 487796	n:2060000
KS ci ratio: 1.012136e+00	ci left: 3.715505e-06	ci right 1.140270e-05	k: 14	n:2060000
KLK2   2060000 perm   2237 sec   (921 perm/sec)   p_kst 6.796117e-06   p_cons 2.367942e-01   p_joint 7.766990e-06

Joint ci ratio: 9.507355e-01	ci left: 4.418065e-06	ci right 1.255214e-05	k: 16	n:2070000
Cons ci ratio: 4.891590e-03	ci left: 2.362031e-01	ci right 2.373618e-01	k: 490139	n:2070000
KS ci ratio: 1.012136e+00	ci left: 3.697556e-06	ci right 1.134762e-05	k: 14	n:2070000
KLK2   2070000 perm   2257 sec   (917 perm/sec)   p_kst 6.763285e-06   p_cons 2.367821e-01   p_joint 7.729469e-06

Joint ci ratio: 9.507355e-01	ci left: 4.396825e-06	ci right 1.249180e-05	k: 16	n:2080000
Cons ci ratio: 4.879583e-03	ci left: 2.362219e-01	ci right 2.373779e-01	k: 492543	n:2080000
KS ci ratio: 1.012136e+00	ci left: 3.679779e-06	ci right 1.129306e-05	k: 14	n:2080000
KLK2   2080000 perm   2277 sec   (913 perm/sec)   p_kst 6.730769e-06   p_cons 2.367995e-01   p_joint 7.692308e-06

Joint ci ratio: 9.239487e-01	ci left: 4.738345e-06	ci right 1.302324e-05	k: 17	n:2090000
Cons ci ratio: 4.867573e-03	ci left: 2.362472e-01	ci right 2.374004e-01	k: 494961	n:2090000
KS ci ratio: 9.799960e-01	ci left: 4.016937e-06	ci right 1.183740e-05	k: 15	n:2090000
KLK2   2090000 perm   2297 sec   (910 perm/sec)   p_kst 7.177033e-06   p_cons 2.368234e-01   p_joint 8.133971e-06

Joint ci ratio: 9.239487e-01	ci left: 4.715781e-06	ci right 1.296123e-05	k: 17	n:2100000
Cons ci ratio: 4.856157e-03	ci left: 2.362347e-01	ci right 2.373851e-01	k: 497300	n:2100000
KS ci ratio: 9.799960e-01	ci left: 3.997808e-06	ci right 1.178103e-05	k: 15	n:2100000
KLK2   2100000 perm   2318 sec   (906 perm/sec)   p_kst 7.142857e-06   p_cons 2.368095e-01   p_joint 8.095238e-06

Joint ci ratio: 9.239487e-01	ci left: 4.693432e-06	ci right 1.289980e-05	k: 17	n:2110000
Cons ci ratio: 4.844585e-03	ci left: 2.362398e-01	ci right 2.373875e-01	k: 499676	n:2110000
KS ci ratio: 9.799961e-01	ci left: 3.978861e-06	ci right 1.172520e-05	k: 15	n:2110000
KLK2   2110000 perm   2338 sec   (903 perm/sec)   p_kst 7.109005e-06   p_cons 2.368133e-01   p_joint 8.056872e-06

Joint ci ratio: 9.239487e-01	ci left: 4.671293e-06	ci right 1.283895e-05	k: 17	n:2120000
Cons ci ratio: 4.833330e-03	ci left: 2.362274e-01	ci right 2.373724e-01	k: 502015	n:2120000
KS ci ratio: 9.799961e-01	ci left: 3.960093e-06	ci right 1.166989e-05	k: 15	n:2120000
KLK2   2120000 perm   2358 sec   (899 perm/sec)   p_kst 7.075472e-06   p_cons 2.367995e-01   p_joint 8.018868e-06

Joint ci ratio: 9.239487e-01	ci left: 4.649362e-06	ci right 1.277868e-05	k: 17	n:2130000
Cons ci ratio: 4.822284e-03	ci left: 2.362053e-01	ci right 2.373475e-01	k: 504333	n:2130000
KS ci ratio: 9.799961e-01	ci left: 3.941501e-06	ci right 1.161510e-05	k: 15	n:2130000
KLK2   2130000 perm   2378 sec   (896 perm/sec)   p_kst 7.042254e-06   p_cons 2.367761e-01   p_joint 7.981221e-06

Joint ci ratio: 9.239488e-01	ci left: 4.627636e-06	ci right 1.271896e-05	k: 17	n:2140000
Cons ci ratio: 4.811226e-03	ci left: 2.361899e-01	ci right 2.373295e-01	k: 506665	n:2140000
KS ci ratio: 9.799961e-01	ci left: 3.923083e-06	ci right 1.156082e-05	k: 15	n:2140000
KLK2   2140000 perm   2399 sec   (892 perm/sec)   p_kst 7.009346e-06   p_cons 2.367593e-01   p_joint 7.943925e-06

Joint ci ratio: 9.239488e-01	ci left: 4.606112e-06	ci right 1.265981e-05	k: 17	n:2150000
Cons ci ratio: 4.800256e-03	ci left: 2.361738e-01	ci right 2.373106e-01	k: 508995	n:2150000
KS ci ratio: 9.799961e-01	ci left: 3.904836e-06	ci right 1.150705e-05	k: 15	n:2150000
KLK2   2150000 perm   2419 sec   (889 perm/sec)   p_kst 6.976744e-06   p_cons 2.367419e-01   p_joint 7.906977e-06

Joint ci ratio: 9.239488e-01	ci left: 4.584787e-06	ci right 1.260120e-05	k: 17	n:2160000
Cons ci ratio: 4.789343e-03	ci left: 2.361592e-01	ci right 2.372934e-01	k: 511328	n:2160000
KS ci ratio: 9.799961e-01	ci left: 3.886758e-06	ci right 1.145378e-05	k: 15	n:2160000
KLK2   2160000 perm   2440 sec   (885 perm/sec)   p_kst 6.944444e-06   p_cons 2.367259e-01   p_joint 7.870370e-06

Joint ci ratio: 9.239488e-01	ci left: 4.563659e-06	ci right 1.254313e-05	k: 17	n:2170000
Cons ci ratio: 4.778662e-03	ci left: 2.361327e-01	ci right 2.372643e-01	k: 513635	n:2170000
KS ci ratio: 9.799962e-01	ci left: 3.868847e-06	ci right 1.140100e-05	k: 15	n:2170000
KLK2   2170000 perm   2461 sec   (882 perm/sec)   p_kst 6.912442e-06   p_cons 2.366982e-01   p_joint 7.834101e-06

Joint ci ratio: 9.239488e-01	ci left: 4.542725e-06	ci right 1.248559e-05	k: 17	n:2180000
Cons ci ratio: 4.767429e-03	ci left: 2.361538e-01	ci right 2.372827e-01	k: 516045	n:2180000
KS ci ratio: 9.799962e-01	ci left: 3.851100e-06	ci right 1.134870e-05	k: 15	n:2180000
KLK2   2180000 perm   2482 sec   (878 perm/sec)   p_kst 6.880734e-06   p_cons 2.367179e-01   p_joint 7.798165e-06

Joint ci ratio: 8.993056e-01	ci left: 4.871213e-06	ci right 1.298981e-05	k: 18	n:2190000
Cons ci ratio: 4.755932e-03	ci left: 2.362006e-01	ci right 2.373271e-01	k: 518512	n:2190000
KS ci ratio: 9.507357e-01	ci left: 4.175979e-06	ci right 1.186436e-05	k: 16	n:2190000
KLK2   2190000 perm   2502 sec   (875 perm/sec)   p_kst 7.305936e-06   p_cons 2.367635e-01   p_joint 8.219178e-06

Joint ci ratio: 8.993056e-01	ci left: 4.849071e-06	ci right 1.293077e-05	k: 18	n:2200000
Cons ci ratio: 4.744822e-03	ci left: 2.362238e-01	ci right 2.373478e-01	k: 520928	n:2200000
KS ci ratio: 9.507358e-01	ci left: 4.156998e-06	ci right 1.181043e-05	k: 16	n:2200000
KLK2   2200000 perm   2523 sec   (872 perm/sec)   p_kst 7.272727e-06   p_cons 2.367855e-01   p_joint 8.181818e-06

Joint ci ratio: 8.993056e-01	ci left: 4.827129e-06	ci right 1.287226e-05	k: 18	n:2210000
Cons ci ratio: 4.733861e-03	ci left: 2.362414e-01	ci right 2.373629e-01	k: 523332	n:2210000
KS ci ratio: 9.507358e-01	ci left: 4.138188e-06	ci right 1.175699e-05	k: 16	n:2210000
KLK2   2210000 perm   2545 sec   (868 perm/sec)   p_kst 7.239819e-06   p_cons 2.368018e-01   p_joint 8.144796e-06

Joint ci ratio: 8.993056e-01	ci left: 4.805386e-06	ci right 1.281428e-05	k: 18	n:2220000
Cons ci ratio: 4.723070e-03	ci left: 2.362517e-01	ci right 2.373706e-01	k: 525720	n:2220000
KS ci ratio: 9.507358e-01	ci left: 4.119547e-06	ci right 1.170403e-05	k: 16	n:2220000
KLK2   2220000 perm   2566 sec   (865 perm/sec)   p_kst 7.207207e-06   p_cons 2.368108e-01   p_joint 8.108108e-06

Joint ci ratio: 8.993056e-01	ci left: 4.783837e-06	ci right 1.275681e-05	k: 18	n:2230000
Cons ci ratio: 4.712463e-03	ci left: 2.362534e-01	ci right 2.373697e-01	k: 528089	n:2230000
KS ci ratio: 9.507358e-01	ci left: 4.101074e-06	ci right 1.165154e-05	k: 16	n:2230000
KLK2   2230000 perm   2588 sec   (862 perm/sec)   p_kst 7.174888e-06   p_cons 2.368112e-01   p_joint 8.071749e-06

Joint ci ratio: 8.993057e-01	ci left: 4.762480e-06	ci right 1.269986e-05	k: 18	n:2240000
Cons ci ratio: 4.702095e-03	ci left: 2.362421e-01	ci right 2.373559e-01	k: 530429	n:2240000
KS ci ratio: 9.507358e-01	ci left: 4.082765e-06	ci right 1.159953e-05	k: 16	n:2240000
KLK2   2240000 perm   2610 sec   (858 perm/sec)   p_kst 7.142857e-06   p_cons 2.367987e-01   p_joint 8.035714e-06

Joint ci ratio: 8.993057e-01	ci left: 4.741314e-06	ci right 1.264342e-05	k: 18	n:2250000
Cons ci ratio: 4.691859e-03	ci left: 2.362260e-01	ci right 2.373374e-01	k: 532758	n:2250000
KS ci ratio: 9.507358e-01	ci left: 4.064620e-06	ci right 1.154797e-05	k: 16	n:2250000
KLK2   2250000 perm   2632 sec   (855 perm/sec)   p_kst 7.111111e-06   p_cons 2.367813e-01   p_joint 8.000000e-06

Joint ci ratio: 8.993057e-01	ci left: 4.720334e-06	ci right 1.258748e-05	k: 18	n:2260000
Cons ci ratio: 4.681249e-03	ci left: 2.362441e-01	ci right 2.373530e-01	k: 535164	n:2260000
KS ci ratio: 9.507359e-01	ci left: 4.046635e-06	ci right 1.149688e-05	k: 16	n:2260000
KLK2   2260000 perm   2653 sec   (852 perm/sec)   p_kst 7.079646e-06   p_cons 2.367982e-01   p_joint 7.964602e-06

Joint ci ratio: 8.993057e-01	ci left: 4.699540e-06	ci right 1.253202e-05	k: 18	n:2270000
Cons ci ratio: 4.670346e-03	ci left: 2.362902e-01	ci right 2.373968e-01	k: 537634	n:2270000
KS ci ratio: 9.507359e-01	ci left: 4.028808e-06	ci right 1.144623e-05	k: 16	n:2270000
KLK2   2270000 perm   2675 sec   (849 perm/sec)   p_kst 7.048458e-06   p_cons 2.368432e-01   p_joint 7.929515e-06

Joint ci ratio: 8.993057e-01	ci left: 4.678928e-06	ci right 1.247706e-05	k: 18	n:2280000
Cons ci ratio: 4.660191e-03	ci left: 2.362838e-01	ci right 2.373879e-01	k: 539985	n:2280000
KS ci ratio: 9.507359e-01	ci left: 4.011138e-06	ci right 1.139603e-05	k: 16	n:2280000
KLK2   2280000 perm   2697 sec   (845 perm/sec)   p_kst 7.017544e-06   p_cons 2.368355e-01   p_joint 7.894737e-06

Joint ci ratio: 8.993057e-01	ci left: 4.658496e-06	ci right 1.242257e-05	k: 18	n:2290000
Cons ci ratio: 4.650052e-03	ci left: 2.362814e-01	ci right 2.373831e-01	k: 542345	n:2290000
KS ci ratio: 9.507359e-01	ci left: 3.993622e-06	ci right 1.134626e-05	k: 16	n:2290000
KLK2   2290000 perm   2720 sec   (842 perm/sec)   p_kst 6.986900e-06   p_cons 2.368319e-01   p_joint 7.860262e-06

Joint ci ratio: 8.993058e-01	ci left: 4.638242e-06	ci right 1.236856e-05	k: 18	n:2300000
Cons ci ratio: 4.640202e-03	ci left: 2.362616e-01	ci right 2.373608e-01	k: 544665	n:2300000
KS ci ratio: 9.507359e-01	ci left: 3.976258e-06	ci right 1.129693e-05	k: 16	n:2300000
KLK2   2300000 perm   2742 sec   (839 perm/sec)   p_kst 6.956522e-06   p_cons 2.368109e-01   p_joint 7.826087e-06

Joint ci ratio: 8.993058e-01	ci left: 4.618163e-06	ci right 1.231502e-05	k: 18	n:2310000
Cons ci ratio: 4.630198e-03	ci left: 2.362588e-01	ci right 2.373557e-01	k: 547024	n:2310000
KS ci ratio: 9.507359e-01	ci left: 3.959045e-06	ci right 1.124803e-05	k: 16	n:2310000
KLK2   2310000 perm   2764 sec   (836 perm/sec)   p_kst 6.926407e-06   p_cons 2.368069e-01   p_joint 7.792208e-06

Joint ci ratio: 8.993058e-01	ci left: 4.598257e-06	ci right 1.226194e-05	k: 18	n:2320000
Cons ci ratio: 4.620418e-03	ci left: 2.362436e-01	ci right 2.373381e-01	k: 549354	n:2320000
KS ci ratio: 9.507360e-01	ci left: 3.941980e-06	ci right 1.119954e-05	k: 16	n:2320000
KLK2   2320000 perm   2787 sec   (833 perm/sec)   p_kst 6.896552e-06   p_cons 2.367905e-01   p_joint 7.758621e-06

Joint ci ratio: 8.993058e-01	ci left: 4.578522e-06	ci right 1.220931e-05	k: 18	n:2330000
Cons ci ratio: 4.610530e-03	ci left: 2.362418e-01	ci right 2.373339e-01	k: 551715	n:2330000
KS ci ratio: 9.507360e-01	ci left: 3.925062e-06	ci right 1.115148e-05	k: 16	n:2330000
KLK2   2330000 perm   2809 sec   (829 perm/sec)   p_kst 6.866953e-06   p_cons 2.367876e-01   p_joint 7.725322e-06

Joint ci ratio: 8.993058e-01	ci left: 4.558955e-06	ci right 1.215714e-05	k: 18	n:2340000
Cons ci ratio: 4.600591e-03	ci left: 2.362490e-01	ci right 2.373388e-01	k: 554097	n:2340000
KS ci ratio: 9.507360e-01	ci left: 3.908288e-06	ci right 1.110382e-05	k: 16	n:2340000
KLK2   2340000 perm   2832 sec   (826 perm/sec)   p_kst 6.837607e-06   p_cons 2.367936e-01   p_joint 7.692308e-06

Joint ci ratio: 8.993058e-01	ci left: 4.539555e-06	ci right 1.210540e-05	k: 18	n:2350000
Cons ci ratio: 4.590765e-03	ci left: 2.362523e-01	ci right 2.373398e-01	k: 556470	n:2350000
KS ci ratio: 9.507360e-01	ci left: 3.891657e-06	ci right 1.105657e-05	k: 16	n:2350000
KLK2   2350000 perm   2854 sec   (823 perm/sec)   p_kst 6.808511e-06   p_cons 2.367957e-01   p_joint 7.659574e-06

Joint ci ratio: 8.993059e-01	ci left: 4.520320e-06	ci right 1.205411e-05	k: 18	n:2360000
Cons ci ratio: 4.580851e-03	ci left: 2.362675e-01	ci right 2.373527e-01	k: 558871	n:2360000
KS ci ratio: 9.507360e-01	ci left: 3.875167e-06	ci right 1.100972e-05	k: 16	n:2360000
KLK2   2360000 perm   2877 sec   (820 perm/sec)   p_kst 6.779661e-06   p_cons 2.368097e-01   p_joint 7.627119e-06

Joint ci ratio: 8.993059e-01	ci left: 4.501247e-06	ci right 1.200325e-05	k: 18	n:2370000
Cons ci ratio: 4.570995e-03	ci left: 2.362829e-01	ci right 2.373658e-01	k: 561273	n:2370000
KS ci ratio: 9.507360e-01	ci left: 3.858816e-06	ci right 1.096327e-05	k: 16	n:2370000
KLK2   2370000 perm   2900 sec   (817 perm/sec)   p_kst 6.751055e-06   p_cons 2.368241e-01   p_joint 7.594937e-06

Joint ci ratio: 8.993059e-01	ci left: 4.482334e-06	ci right 1.195281e-05	k: 18	n:2380000
Cons ci ratio: 4.561172e-03	ci left: 2.363007e-01	ci right 2.373814e-01	k: 563681	n:2380000
KS ci ratio: 9.507361e-01	ci left: 3.842602e-06	ci right 1.091720e-05	k: 16	n:2380000
KLK2   2380000 perm   2923 sec   (814 perm/sec)   p_kst 6.722689e-06   p_cons 2.368408e-01   p_joint 7.563025e-06

Joint ci ratio: 8.993059e-01	ci left: 4.463579e-06	ci right 1.190280e-05	k: 18	n:2390000
Cons ci ratio: 4.551379e-03	ci left: 2.363209e-01	ci right 2.373994e-01	k: 566095	n:2390000
KS ci ratio: 9.507361e-01	ci left: 3.826525e-06	ci right 1.087152e-05	k: 16	n:2390000
KLK2   2390000 perm   2945 sec   (811 perm/sec)   p_kst 6.694561e-06   p_cons 2.368598e-01   p_joint 7.531381e-06

Joint ci ratio: 8.993059e-01	ci left: 4.444981e-06	ci right 1.185321e-05	k: 18	n:2400000
Cons ci ratio: 4.541550e-03	ci left: 2.363489e-01	ci right 2.374251e-01	k: 568528	n:2400000
KS ci ratio: 9.507361e-01	ci left: 3.810581e-06	ci right 1.082623e-05	k: 16	n:2400000
KLK2   2400000 perm   2968 sec   (809 perm/sec)   p_kst 6.666667e-06   p_cons 2.368867e-01   p_joint 7.500000e-06

Joint ci ratio: 8.993059e-01	ci left: 4.426537e-06	ci right 1.180402e-05	k: 18	n:2410000
Cons ci ratio: 4.531857e-03	ci left: 2.363708e-01	ci right 2.374448e-01	k: 570947	n:2410000
KS ci ratio: 9.507361e-01	ci left: 3.794769e-06	ci right 1.078130e-05	k: 16	n:2410000
KLK2   2410000 perm   2991 sec   (806 perm/sec)   p_kst 6.639004e-06   p_cons 2.369075e-01   p_joint 7.468880e-06

Joint ci ratio: 8.993060e-01	ci left: 4.408246e-06	ci right 1.175525e-05	k: 18	n:2420000
Cons ci ratio: 4.522697e-03	ci left: 2.363549e-01	ci right 2.374267e-01	k: 573275	n:2420000
KS ci ratio: 9.507361e-01	ci left: 3.779088e-06	ci right 1.073675e-05	k: 16	n:2420000
KLK2   2420000 perm   3014 sec   (803 perm/sec)   p_kst 6.611570e-06   p_cons 2.368905e-01   p_joint 7.438017e-06

Joint ci ratio: 8.993060e-01	ci left: 4.390105e-06	ci right 1.170687e-05	k: 18	n:2430000
Cons ci ratio: 4.513406e-03	ci left: 2.363540e-01	ci right 2.374236e-01	k: 575639	n:2430000
KS ci ratio: 9.507361e-01	ci left: 3.763536e-06	ci right 1.069257e-05	k: 16	n:2430000
KLK2   2430000 perm   3038 sec   (800 perm/sec)   p_kst 6.584362e-06   p_cons 2.368885e-01   p_joint 7.407407e-06

Joint ci ratio: 8.993060e-01	ci left: 4.372113e-06	ci right 1.165889e-05	k: 18	n:2440000
Cons ci ratio: 4.504265e-03	ci left: 2.363457e-01	ci right 2.374131e-01	k: 577985	n:2440000
KS ci ratio: 9.507361e-01	ci left: 3.748112e-06	ci right 1.064875e-05	k: 16	n:2440000
KLK2   2440000 perm   3061 sec   (797 perm/sec)   p_kst 6.557377e-06   p_cons 2.368791e-01   p_joint 7.377049e-06

Joint ci ratio: 8.993060e-01	ci left: 4.354267e-06	ci right 1.161131e-05	k: 18	n:2450000
Cons ci ratio: 4.495275e-03	ci left: 2.363298e-01	ci right 2.373949e-01	k: 580312	n:2450000
KS ci ratio: 9.507362e-01	ci left: 3.732814e-06	ci right 1.060528e-05	k: 16	n:2450000
KLK2   2450000 perm   3084 sec   (794 perm/sec)   p_kst 6.530612e-06   p_cons 2.368620e-01   p_joint 7.346939e-06

Joint ci ratio: 8.993060e-01	ci left: 4.336567e-06	ci right 1.156411e-05	k: 18	n:2460000
Cons ci ratio: 4.485840e-03	ci left: 2.363542e-01	ci right 2.374172e-01	k: 582738	n:2460000
KS ci ratio: 9.507362e-01	ci left: 3.717640e-06	ci right 1.056217e-05	k: 16	n:2460000
KLK2   2460000 perm   3108 sec   (792 perm/sec)   p_kst 6.504065e-06   p_cons 2.368854e-01   p_joint 7.317073e-06

Joint ci ratio: 8.993060e-01	ci left: 4.319010e-06	ci right 1.151729e-05	k: 18	n:2470000
Cons ci ratio: 4.476880e-03	ci left: 2.363448e-01	ci right 2.374056e-01	k: 585081	n:2470000
KS ci ratio: 9.507362e-01	ci left: 3.702588e-06	ci right 1.051941e-05	k: 16	n:2470000
KLK2   2470000 perm   3131 sec   (789 perm/sec)   p_kst 6.477733e-06   p_cons 2.368749e-01   p_joint 7.287449e-06

Joint ci ratio: 8.993061e-01	ci left: 4.301595e-06	ci right 1.147085e-05	k: 18	n:2480000
Cons ci ratio: 4.467629e-03	ci left: 2.363633e-01	ci right 2.374220e-01	k: 587493	n:2480000
KS ci ratio: 9.507362e-01	ci left: 3.687659e-06	ci right 1.047699e-05	k: 16	n:2480000
KLK2   2480000 perm   3155 sec   (786 perm/sec)   p_kst 6.451613e-06   p_cons 2.368923e-01   p_joint 7.258065e-06

Joint ci ratio: 8.993061e-01	ci left: 4.284319e-06	ci right 1.142478e-05	k: 18	n:2490000
Cons ci ratio: 4.458619e-03	ci left: 2.363668e-01	ci right 2.374234e-01	k: 589868	n:2490000
KS ci ratio: 9.507362e-01	ci left: 3.672849e-06	ci right 1.043492e-05	k: 16	n:2490000
KLK2   2490000 perm   3179 sec   (783 perm/sec)   p_kst 6.425703e-06   p_cons 2.368948e-01   p_joint 7.228916e-06

Joint ci ratio: 8.993061e-01	ci left: 4.267182e-06	ci right 1.137908e-05	k: 18	n:2500000
Cons ci ratio: 4.449727e-03	ci left: 2.363651e-01	ci right 2.374195e-01	k: 592230	n:2500000
KS ci ratio: 9.507362e-01	ci left: 3.658157e-06	ci right 1.039318e-05	k: 16	n:2500000
KLK2   2500000 perm   3203 sec   (781 perm/sec)   p_kst 6.400000e-06   p_cons 2.368920e-01   p_joint 7.200000e-06

Joint ci ratio: 8.993061e-01	ci left: 4.250181e-06	ci right 1.133375e-05	k: 18	n:2510000
Cons ci ratio: 4.440815e-03	ci left: 2.363693e-01	ci right 2.374217e-01	k: 594607	n:2510000
KS ci ratio: 9.507362e-01	ci left: 3.643583e-06	ci right 1.035177e-05	k: 16	n:2510000
KLK2   2510000 perm   3227 sec   (778 perm/sec)   p_kst 6.374502e-06   p_cons 2.368952e-01   p_joint 7.171315e-06

Joint ci ratio: 8.993061e-01	ci left: 4.233315e-06	ci right 1.128877e-05	k: 18	n:2520000
Cons ci ratio: 4.432223e-03	ci left: 2.363518e-01	ci right 2.374020e-01	k: 596929	n:2520000
KS ci ratio: 9.507363e-01	ci left: 3.629124e-06	ci right 1.031069e-05	k: 16	n:2520000
KLK2   2520000 perm   3250 sec   (775 perm/sec)   p_kst 6.349206e-06   p_cons 2.368766e-01   p_joint 7.142857e-06

Joint ci ratio: 8.993061e-01	ci left: 4.216583e-06	ci right 1.124415e-05	k: 18	n:2530000
Cons ci ratio: 4.423265e-03	ci left: 2.363683e-01	ci right 2.374165e-01	k: 599337	n:2530000
KS ci ratio: 9.507363e-01	ci left: 3.614780e-06	ci right 1.026994e-05	k: 16	n:2530000
KLK2   2530000 perm   3275 sec   (773 perm/sec)   p_kst 6.324111e-06   p_cons 2.368921e-01   p_joint 7.114625e-06

Joint ci ratio: 8.993061e-01	ci left: 4.199982e-06	ci right 1.119988e-05	k: 18	n:2540000
Cons ci ratio: 4.414751e-03	ci left: 2.363528e-01	ci right 2.373990e-01	k: 601664	n:2540000
KS ci ratio: 9.507363e-01	ci left: 3.600548e-06	ci right 1.022951e-05	k: 16	n:2540000
KLK2   2540000 perm   3299 sec   (770 perm/sec)   p_kst 6.299213e-06   p_cons 2.368756e-01   p_joint 7.086614e-06

Joint ci ratio: 8.993062e-01	ci left: 4.183511e-06	ci right 1.115596e-05	k: 18	n:2550000
Cons ci ratio: 4.406310e-03	ci left: 2.363355e-01	ci right 2.373796e-01	k: 603986	n:2550000
KS ci ratio: 9.507363e-01	ci left: 3.586429e-06	ci right 1.018939e-05	k: 16	n:2550000
KLK2   2550000 perm   3324 sec   (767 perm/sec)   p_kst 6.274510e-06   p_cons 2.368573e-01   p_joint 7.058824e-06

Joint ci ratio: 8.993062e-01	ci left: 4.167170e-06	ci right 1.111238e-05	k: 18	n:2560000
Cons ci ratio: 4.397907e-03	ci left: 2.363192e-01	ci right 2.373611e-01	k: 606310	n:2560000
KS ci ratio: 9.507363e-01	ci left: 3.572419e-06	ci right 1.014959e-05	k: 16	n:2560000
KLK2   2560000 perm   3350 sec   (764 perm/sec)   p_kst 6.250000e-06   p_cons 2.368398e-01   p_joint 7.031250e-06

Joint ci ratio: 8.993062e-01	ci left: 4.150955e-06	ci right 1.106914e-05	k: 18	n:2570000
Cons ci ratio: 4.389439e-03	ci left: 2.363122e-01	ci right 2.373522e-01	k: 608658	n:2570000
KS ci ratio: 9.507363e-01	ci left: 3.558519e-06	ci right 1.011010e-05	k: 16	n:2570000
KLK2   2570000 perm   3375 sec   (761 perm/sec)   p_kst 6.225681e-06   p_cons 2.368319e-01   p_joint 7.003891e-06

Joint ci ratio: 8.993062e-01	ci left: 4.134866e-06	ci right 1.102624e-05	k: 18	n:2580000
Cons ci ratio: 4.380827e-03	ci left: 2.363213e-01	ci right 2.373592e-01	k: 611047	n:2580000
KS ci ratio: 9.507363e-01	ci left: 3.544726e-06	ci right 1.007091e-05	k: 16	n:2580000
KLK2   2580000 perm   3400 sec   (759 perm/sec)   p_kst 6.201550e-06   p_cons 2.368399e-01   p_joint 6.976744e-06

Joint ci ratio: 8.993062e-01	ci left: 4.118901e-06	ci right 1.098367e-05	k: 18	n:2590000
Cons ci ratio: 4.372485e-03	ci left: 2.363121e-01	ci right 2.373480e-01	k: 613389	n:2590000
KS ci ratio: 9.507363e-01	ci left: 3.531040e-06	ci right 1.003203e-05	k: 16	n:2590000
KLK2   2590000 perm   3425 sec   (756 perm/sec)   p_kst 6.177606e-06   p_cons 2.368297e-01   p_joint 6.949807e-06

Joint ci ratio: 8.993062e-01	ci left: 4.103059e-06	ci right 1.094142e-05	k: 18	n:2600000
Cons ci ratio: 4.363949e-03	ci left: 2.363229e-01	ci right 2.373569e-01	k: 615783	n:2600000
KS ci ratio: 9.507364e-01	ci left: 3.517459e-06	ci right 9.993441e-06	k: 16	n:2600000
KLK2   2600000 perm   3450 sec   (754 perm/sec)   p_kst 6.153846e-06   p_cons 2.368396e-01   p_joint 6.923077e-06

Joint ci ratio: 8.993062e-01	ci left: 4.087339e-06	ci right 1.089950e-05	k: 18	n:2610000
Cons ci ratio: 4.355781e-03	ci left: 2.363073e-01	ci right 2.373392e-01	k: 618108	n:2610000
KS ci ratio: 9.507364e-01	ci left: 3.503982e-06	ci right 9.955152e-06	k: 16	n:2610000
KLK2   2610000 perm   3475 sec   (751 perm/sec)   p_kst 6.130268e-06   p_cons 2.368230e-01   p_joint 6.896552e-06

Joint ci ratio: 8.993062e-01	ci left: 4.071738e-06	ci right 1.085790e-05	k: 18	n:2620000
Cons ci ratio: 4.347636e-03	ci left: 2.362937e-01	ci right 2.373236e-01	k: 620438	n:2620000
KS ci ratio: 9.507364e-01	ci left: 3.490608e-06	ci right 9.917156e-06	k: 16	n:2620000
KLK2   2620000 perm   3500 sec   (749 perm/sec)   p_kst 6.106870e-06   p_cons 2.368084e-01   p_joint 6.870229e-06

Joint ci ratio: 8.765351e-01	ci left: 4.349527e-06	ci right 1.128167e-05	k: 19	n:2630000
Cons ci ratio: 4.339637e-03	ci left: 2.362719e-01	ci right 2.372998e-01	k: 622746	n:2630000
KS ci ratio: 9.239495e-01	ci left: 3.765452e-06	ci right 1.034928e-05	k: 17	n:2630000
KLK2   2630000 perm   3526 sec   (746 perm/sec)   p_kst 6.463878e-06   p_cons 2.367856e-01   p_joint 7.224335e-06

Joint ci ratio: 8.765352e-01	ci left: 4.333051e-06	ci right 1.123894e-05	k: 19	n:2640000
Cons ci ratio: 4.331573e-03	ci left: 2.362593e-01	ci right 2.372852e-01	k: 625078	n:2640000
KS ci ratio: 9.239495e-01	ci left: 3.751189e-06	ci right 1.031007e-05	k: 17	n:2640000
KLK2   2640000 perm   3551 sec   (744 perm/sec)   p_kst 6.439394e-06   p_cons 2.367720e-01   p_joint 7.196970e-06

Joint ci ratio: 8.765352e-01	ci left: 4.316700e-06	ci right 1.119653e-05	k: 19	n:2650000
Cons ci ratio: 4.323572e-03	ci left: 2.362453e-01	ci right 2.372693e-01	k: 627406	n:2650000
KS ci ratio: 9.239495e-01	ci left: 3.737033e-06	ci right 1.027117e-05	k: 17	n:2650000
KLK2   2650000 perm   3576 sec   (741 perm/sec)   p_kst 6.415094e-06   p_cons 2.367570e-01   p_joint 7.169811e-06

Joint ci ratio: 8.765352e-01	ci left: 4.300472e-06	ci right 1.115443e-05	k: 19	n:2660000
Cons ci ratio: 4.315633e-03	ci left: 2.362299e-01	ci right 2.372519e-01	k: 629730	n:2660000
KS ci ratio: 9.239496e-01	ci left: 3.722984e-06	ci right 1.023255e-05	k: 17	n:2660000
KLK2   2660000 perm   3602 sec   (739 perm/sec)   p_kst 6.390977e-06   p_cons 2.367406e-01   p_joint 7.142857e-06

Joint ci ratio: 8.765352e-01	ci left: 4.284365e-06	ci right 1.111266e-05	k: 19	n:2670000
Cons ci ratio: 4.307438e-03	ci left: 2.362397e-01	ci right 2.372598e-01	k: 632121	n:2670000
KS ci ratio: 9.239496e-01	ci left: 3.709040e-06	ci right 1.019423e-05	k: 17	n:2670000
KLK2   2670000 perm   3627 sec   (736 perm/sec)   p_kst 6.367041e-06   p_cons 2.367494e-01   p_joint 7.116105e-06

Joint ci ratio: 8.765352e-01	ci left: 4.268379e-06	ci right 1.107119e-05	k: 19	n:2680000
Cons ci ratio: 4.299192e-03	ci left: 2.362576e-01	ci right 2.372758e-01	k: 634534	n:2680000
KS ci ratio: 9.239496e-01	ci left: 3.695201e-06	ci right 1.015619e-05	k: 17	n:2680000
KLK2   2680000 perm   3653 sec   (734 perm/sec)   p_kst 6.343284e-06   p_cons 2.367664e-01   p_joint 7.089552e-06

Joint ci ratio: 8.765352e-01	ci left: 4.252511e-06	ci right 1.103004e-05	k: 19	n:2690000
Cons ci ratio: 4.291365e-03	ci left: 2.362442e-01	ci right 2.372605e-01	k: 636863	n:2690000
KS ci ratio: 9.239496e-01	ci left: 3.681464e-06	ci right 1.011844e-05	k: 17	n:2690000
KLK2   2690000 perm   3678 sec   (731 perm/sec)   p_kst 6.319703e-06   p_cons 2.367520e-01   p_joint 7.063197e-06

Joint ci ratio: 8.765352e-01	ci left: 4.236761e-06	ci right 1.098918e-05	k: 19	n:2700000
Cons ci ratio: 4.283527e-03	ci left: 2.362353e-01	ci right 2.372497e-01	k: 639204	n:2700000
KS ci ratio: 9.239496e-01	ci left: 3.667829e-06	ci right 1.008096e-05	k: 17	n:2700000
KLK2   2700000 perm   3704 sec   (729 perm/sec)   p_kst 6.296296e-06   p_cons 2.367422e-01   p_joint 7.037037e-06

Joint ci ratio: 8.765353e-01	ci left: 4.221127e-06	ci right 1.094863e-05	k: 19	n:2710000
Cons ci ratio: 4.275181e-03	ci left: 2.362729e-01	ci right 2.372856e-01	k: 641671	n:2710000
KS ci ratio: 9.239496e-01	ci left: 3.654294e-06	ci right 1.004376e-05	k: 17	n:2710000
KLK2   2710000 perm   3730 sec   (727 perm/sec)   p_kst 6.273063e-06   p_cons 2.367790e-01   p_joint 7.011070e-06

Joint ci ratio: 8.765353e-01	ci left: 4.205608e-06	ci right 1.090838e-05	k: 19	n:2720000
Cons ci ratio: 4.267180e-03	ci left: 2.362853e-01	ci right 2.372961e-01	k: 644070	n:2720000
KS ci ratio: 9.239496e-01	ci left: 3.640859e-06	ci right 1.000684e-05	k: 17	n:2720000
KLK2   2720000 perm   3756 sec   (724 perm/sec)   p_kst 6.250000e-06   p_cons 2.367904e-01   p_joint 6.985294e-06

Joint ci ratio: 8.765353e-01	ci left: 4.190203e-06	ci right 1.086842e-05	k: 19	n:2730000
Cons ci ratio: 4.259387e-03	ci left: 2.362837e-01	ci right 2.372927e-01	k: 646431	n:2730000
KS ci ratio: 9.239496e-01	ci left: 3.627523e-06	ci right 9.970182e-06	k: 17	n:2730000
KLK2   2730000 perm   3782 sec   (722 perm/sec)   p_kst 6.227106e-06   p_cons 2.367879e-01   p_joint 6.959707e-06

Joint ci ratio: 8.765353e-01	ci left: 4.174911e-06	ci right 1.082876e-05	k: 19	n:2740000
Cons ci ratio: 4.251586e-03	ci left: 2.362865e-01	ci right 2.372936e-01	k: 648804	n:2740000
KS ci ratio: 9.239497e-01	ci left: 3.614284e-06	ci right 9.933794e-06	k: 17	n:2740000
KLK2   2740000 perm   3809 sec   (719 perm/sec)   p_kst 6.204380e-06   p_cons 2.367898e-01   p_joint 6.934307e-06

Joint ci ratio: 8.765353e-01	ci left: 4.159729e-06	ci right 1.078938e-05	k: 19	n:2750000
Cons ci ratio: 4.243754e-03	ci left: 2.362955e-01	ci right 2.373007e-01	k: 651194	n:2750000
KS ci ratio: 9.239497e-01	ci left: 3.601141e-06	ci right 9.897671e-06	k: 17	n:2750000
KLK2   2750000 perm   3835 sec   (717 perm/sec)   p_kst 6.181818e-06   p_cons 2.367978e-01   p_joint 6.909091e-06

Joint ci ratio: 8.765353e-01	ci left: 4.144658e-06	ci right 1.075029e-05	k: 19	n:2760000
Cons ci ratio: 4.236008e-03	ci left: 2.363007e-01	ci right 2.373042e-01	k: 653574	n:2760000
KS ci ratio: 9.239497e-01	ci left: 3.588093e-06	ci right 9.861810e-06	k: 17	n:2760000
KLK2   2760000 perm   3861 sec   (715 perm/sec)   p_kst 6.159420e-06   p_cons 2.368022e-01   p_joint 6.884058e-06

Joint ci ratio: 8.765353e-01	ci left: 4.129695e-06	ci right 1.071148e-05	k: 19	n:2770000
Cons ci ratio: 4.228207e-03	ci left: 2.363143e-01	ci right 2.373159e-01	k: 655977	n:2770000
KS ci ratio: 9.239497e-01	ci left: 3.575140e-06	ci right 9.826208e-06	k: 17	n:2770000
KLK2   2770000 perm   3887 sec   (713 perm/sec)   p_kst 6.137184e-06   p_cons 2.368148e-01   p_joint 6.859206e-06

Joint ci ratio: 8.765353e-01	ci left: 4.114840e-06	ci right 1.067295e-05	k: 19	n:2780000
Cons ci ratio: 4.220512e-03	ci left: 2.363223e-01	ci right 2.373221e-01	k: 658365	n:2780000
KS ci ratio: 9.239497e-01	ci left: 3.562280e-06	ci right 9.790862e-06	k: 17	n:2780000
KLK2   2780000 perm   3914 sec   (710 perm/sec)   p_kst 6.115108e-06   p_cons 2.368219e-01   p_joint 6.834532e-06

Joint ci ratio: 8.765353e-01	ci left: 4.100091e-06	ci right 1.063469e-05	k: 19	n:2790000
Cons ci ratio: 4.213064e-03	ci left: 2.363127e-01	ci right 2.373108e-01	k: 660704	n:2790000
KS ci ratio: 9.239497e-01	ci left: 3.549512e-06	ci right 9.755770e-06	k: 17	n:2790000
KLK2   2790000 perm   3941 sec   (708 perm/sec)   p_kst 6.093190e-06   p_cons 2.368115e-01   p_joint 6.810036e-06

Joint ci ratio: 8.765354e-01	ci left: 4.085448e-06	ci right 1.059671e-05	k: 19	n:2800000
Cons ci ratio: 4.205618e-03	ci left: 2.363064e-01	ci right 2.373027e-01	k: 663052	n:2800000
KS ci ratio: 9.239497e-01	ci left: 3.536835e-06	ci right 9.720928e-06	k: 17	n:2800000
KLK2   2800000 perm   3967 sec   (706 perm/sec)   p_kst 6.071429e-06   p_cons 2.368043e-01   p_joint 6.785714e-06

Joint ci ratio: 8.765354e-01	ci left: 4.070909e-06	ci right 1.055900e-05	k: 19	n:2810000
Cons ci ratio: 4.198533e-03	ci left: 2.362725e-01	ci right 2.372669e-01	k: 665322	n:2810000
KS ci ratio: 9.239497e-01	ci left: 3.524248e-06	ci right 9.686334e-06	k: 17	n:2810000
KLK2   2810000 perm   3994 sec   (704 perm/sec)   p_kst 6.049822e-06   p_cons 2.367694e-01   p_joint 6.761566e-06

Joint ci ratio: 8.765354e-01	ci left: 4.056473e-06	ci right 1.052156e-05	k: 19	n:2820000
Cons ci ratio: 4.190789e-03	ci left: 2.362986e-01	ci right 2.372913e-01	k: 667761	n:2820000
KS ci ratio: 9.239497e-01	ci left: 3.511751e-06	ci right 9.651985e-06	k: 17	n:2820000
KLK2   2820000 perm   4020 sec   (701 perm/sec)   p_kst 6.028369e-06   p_cons 2.367947e-01   p_joint 6.737589e-06

Joint ci ratio: 8.765354e-01	ci left: 4.042139e-06	ci right 1.048438e-05	k: 19	n:2830000
Cons ci ratio: 4.183529e-03	ci left: 2.362864e-01	ci right 2.372774e-01	k: 670092	n:2830000
KS ci ratio: 9.239498e-01	ci left: 3.499342e-06	ci right 9.617879e-06	k: 17	n:2830000
KLK2   2830000 perm   4047 sec   (699 perm/sec)   p_kst 6.007067e-06   p_cons 2.367816e-01   p_joint 6.713781e-06

Joint ci ratio: 8.765354e-01	ci left: 4.027906e-06	ci right 1.044746e-05	k: 19	n:2840000
Cons ci ratio: 4.176372e-03	ci left: 2.362687e-01	ci right 2.372579e-01	k: 672407	n:2840000
KS ci ratio: 9.239498e-01	ci left: 3.487020e-06	ci right 9.584013e-06	k: 17	n:2840000
KLK2   2840000 perm   4074 sec   (697 perm/sec)   p_kst 5.985915e-06   p_cons 2.367630e-01   p_joint 6.690141e-06

Joint ci ratio: 8.765354e-01	ci left: 4.013773e-06	ci right 1.041081e-05	k: 19	n:2850000
Cons ci ratio: 4.169106e-03	ci left: 2.362638e-01	ci right 2.372512e-01	k: 674758	n:2850000
KS ci ratio: 9.239498e-01	ci left: 3.474785e-06	ci right 9.550385e-06	k: 17	n:2850000
KLK2   2850000 perm   4101 sec   (695 perm/sec)   p_kst 5.964912e-06   p_cons 2.367572e-01   p_joint 6.666667e-06

Joint ci ratio: 8.765354e-01	ci left: 3.999739e-06	ci right 1.037440e-05	k: 19	n:2860000
Cons ci ratio: 4.161958e-03	ci left: 2.362518e-01	ci right 2.372375e-01	k: 677089	n:2860000
KS ci ratio: 9.239498e-01	ci left: 3.462635e-06	ci right 9.516992e-06	k: 17	n:2860000
KLK2   2860000 perm   4128 sec   (693 perm/sec)   p_kst 5.944056e-06   p_cons 2.367444e-01   p_joint 6.643357e-06

Joint ci ratio: 8.765354e-01	ci left: 3.985803e-06	ci right 1.033826e-05	k: 19	n:2870000
Cons ci ratio: 4.154755e-03	ci left: 2.362480e-01	ci right 2.372320e-01	k: 679443	n:2870000
KS ci ratio: 9.239498e-01	ci left: 3.450570e-06	ci right 9.483832e-06	k: 17	n:2870000
KLK2   2870000 perm   4155 sec   (691 perm/sec)   p_kst 5.923345e-06   p_cons 2.367397e-01   p_joint 6.620209e-06

Joint ci ratio: 8.765355e-01	ci left: 3.971963e-06	ci right 1.030236e-05	k: 19	n:2880000
Cons ci ratio: 4.147884e-03	ci left: 2.362186e-01	ci right 2.372007e-01	k: 681723	n:2880000
KS ci ratio: 9.239498e-01	ci left: 3.438589e-06	ci right 9.450902e-06	k: 17	n:2880000
KLK2   2880000 perm   4183 sec   (688 perm/sec)   p_kst 5.902778e-06   p_cons 2.367094e-01   p_joint 6.597222e-06

Joint ci ratio: 8.765355e-01	ci left: 3.958219e-06	ci right 1.026671e-05	k: 19	n:2890000
Cons ci ratio: 4.140488e-03	ci left: 2.362380e-01	ci right 2.372185e-01	k: 684144	n:2890000
KS ci ratio: 9.239498e-01	ci left: 3.426691e-06	ci right 9.418200e-06	k: 17	n:2890000
KLK2   2890000 perm   4211 sec   (686 perm/sec)   p_kst 5.882353e-06   p_cons 2.367280e-01   p_joint 6.574394e-06

Joint ci ratio: 8.765355e-01	ci left: 3.944570e-06	ci right 1.023131e-05	k: 19	n:2900000
Cons ci ratio: 4.133305e-03	ci left: 2.362422e-01	ci right 2.372210e-01	k: 686521	n:2900000
KS ci ratio: 9.239498e-01	ci left: 3.414875e-06	ci right 9.385724e-06	k: 17	n:2900000
KLK2   2900000 perm   4239 sec   (684 perm/sec)   p_kst 5.862069e-06   p_cons 2.367314e-01   p_joint 6.551724e-06

Joint ci ratio: 8.765355e-01	ci left: 3.931015e-06	ci right 1.019615e-05	k: 19	n:2910000
Cons ci ratio: 4.125978e-03	ci left: 2.362622e-01	ci right 2.372394e-01	k: 688944	n:2910000
KS ci ratio: 9.239498e-01	ci left: 3.403140e-06	ci right 9.353470e-06	k: 17	n:2910000
KLK2   2910000 perm   4267 sec   (682 perm/sec)   p_kst 5.841924e-06   p_cons 2.367505e-01   p_joint 6.529210e-06

Joint ci ratio: 8.765355e-01	ci left: 3.917553e-06	ci right 1.016123e-05	k: 19	n:2920000
Cons ci ratio: 4.119007e-03	ci left: 2.362543e-01	ci right 2.372298e-01	k: 691286	n:2920000
KS ci ratio: 9.239499e-01	ci left: 3.391485e-06	ci right 9.321438e-06	k: 17	n:2920000
KLK2   2920000 perm   4295 sec   (680 perm/sec)   p_kst 5.821918e-06   p_cons 2.367418e-01   p_joint 6.506849e-06

Joint ci ratio: 8.765355e-01	ci left: 3.904182e-06	ci right 1.012655e-05	k: 19	n:2930000
Cons ci ratio: 4.111993e-03	ci left: 2.362533e-01	ci right 2.372271e-01	k: 693648	n:2930000
KS ci ratio: 9.239499e-01	ci left: 3.379910e-06	ci right 9.289624e-06	k: 17	n:2930000
KLK2   2930000 perm   4322 sec   (678 perm/sec)   p_kst 5.802048e-06   p_cons 2.367399e-01   p_joint 6.484642e-06

Joint ci ratio: 8.765355e-01	ci left: 3.890903e-06	ci right 1.009211e-05	k: 19	n:2940000
Cons ci ratio: 4.104844e-03	ci left: 2.362672e-01	ci right 2.372394e-01	k: 696054	n:2940000
KS ci ratio: 9.239499e-01	ci left: 3.368414e-06	ci right 9.258027e-06	k: 17	n:2940000
KLK2   2940000 perm   4350 sec   (676 perm/sec)   p_kst 5.782313e-06   p_cons 2.367531e-01   p_joint 6.462585e-06

Joint ci ratio: 8.765355e-01	ci left: 3.877713e-06	ci right 1.005790e-05	k: 19	n:2950000
Cons ci ratio: 4.097937e-03	ci left: 2.362631e-01	ci right 2.372336e-01	k: 698407	n:2950000
KS ci ratio: 9.239499e-01	ci left: 3.356995e-06	ci right 9.226644e-06	k: 17	n:2950000
KLK2   2950000 perm   4379 sec   (674 perm/sec)   p_kst 5.762712e-06   p_cons 2.367481e-01   p_joint 6.440678e-06

Joint ci ratio: 8.554110e-01	ci left: 4.127207e-06	ci right 1.043524e-05	k: 20	n:2960000
Cons ci ratio: 4.091122e-03	ci left: 2.362540e-01	ci right 2.372229e-01	k: 700745	n:2960000
KS ci ratio: 8.993066e-01	ci left: 3.604038e-06	ci right 9.610713e-06	k: 18	n:2960000
KLK2   2960000 perm   4406 sec   (672 perm/sec)   p_kst 6.081081e-06   p_cons 2.367382e-01   p_joint 6.756757e-06

Joint ci ratio: 8.554110e-01	ci left: 4.113311e-06	ci right 1.040011e-05	k: 20	n:2970000
Cons ci ratio: 4.084340e-03	ci left: 2.362449e-01	ci right 2.372121e-01	k: 703083	n:2970000
KS ci ratio: 8.993066e-01	ci left: 3.591903e-06	ci right 9.578354e-06	k: 18	n:2970000
KLK2   2970000 perm   4434 sec   (670 perm/sec)   p_kst 6.060606e-06   p_cons 2.367283e-01   p_joint 6.734007e-06

Joint ci ratio: 8.554110e-01	ci left: 4.099508e-06	ci right 1.036521e-05	k: 20	n:2980000
Cons ci ratio: 4.077824e-03	ci left: 2.362155e-01	ci right 2.371810e-01	k: 705360	n:2980000
KS ci ratio: 8.993067e-01	ci left: 3.579850e-06	ci right 9.546212e-06	k: 18	n:2980000
KLK2   2980000 perm   4462 sec   (668 perm/sec)   p_kst 6.040268e-06   p_cons 2.366980e-01   p_joint 6.711409e-06

Joint ci ratio: 8.554110e-01	ci left: 4.085797e-06	ci right 1.033054e-05	k: 20	n:2990000
Cons ci ratio: 4.071066e-03	ci left: 2.362103e-01	ci right 2.371742e-01	k: 707709	n:2990000
KS ci ratio: 8.993067e-01	ci left: 3.567877e-06	ci right 9.514284e-06	k: 18	n:2990000
KLK2   2990000 perm   4491 sec   (666 perm/sec)   p_kst 6.020067e-06   p_cons 2.366920e-01   p_joint 6.688963e-06

Joint ci ratio: 8.554110e-01	ci left: 4.072178e-06	ci right 1.029611e-05	k: 20	n:3000000
Cons ci ratio: 4.064137e-03	ci left: 2.362234e-01	ci right 2.371857e-01	k: 710113	n:3000000
KS ci ratio: 8.993067e-01	ci left: 3.555984e-06	ci right 9.482570e-06	k: 18	n:3000000
KLK2   3000000 perm   4519 sec   (664 perm/sec)   p_kst 6.000000e-06   p_cons 2.367043e-01   p_joint 6.666667e-06

Joint ci ratio: 8.554110e-01	ci left: 4.058649e-06	ci right 1.026190e-05	k: 20	n:3010000
Cons ci ratio: 4.057552e-03	ci left: 2.362089e-01	ci right 2.371696e-01	k: 712434	n:3010000
KS ci ratio: 8.993067e-01	ci left: 3.544170e-06	ci right 9.451067e-06	k: 18	n:3010000
KLK2   3010000 perm   4547 sec   (662 perm/sec)   p_kst 5.980066e-06   p_cons 2.366890e-01   p_joint 6.644518e-06

Joint ci ratio: 8.554110e-01	ci left: 4.045210e-06	ci right 1.022792e-05	k: 20	n:3020000
Cons ci ratio: 4.050765e-03	ci left: 2.362154e-01	ci right 2.371745e-01	k: 714818	n:3020000
KS ci ratio: 8.993067e-01	ci left: 3.532434e-06	ci right 9.419772e-06	k: 18	n:3020000
KLK2   3020000 perm   4575 sec   (660 perm/sec)   p_kst 5.960265e-06   p_cons 2.366947e-01   p_joint 6.622517e-06

Joint ci ratio: 8.554110e-01	ci left: 4.031859e-06	ci right 1.019417e-05	k: 20	n:3030000
Cons ci ratio: 4.043912e-03	ci left: 2.362307e-01	ci right 2.371883e-01	k: 717229	n:3030000
KS ci ratio: 8.993067e-01	ci left: 3.520776e-06	ci right 9.388684e-06	k: 18	n:3030000
KLK2   3030000 perm   4603 sec   (658 perm/sec)   p_kst 5.940594e-06   p_cons 2.367092e-01   p_joint 6.600660e-06

Joint ci ratio: 8.357436e-01	ci left: 4.276101e-06	ci right 1.055943e-05	k: 21	n:3040000
Cons ci ratio: 4.037058e-03	ci left: 2.362492e-01	ci right 2.372052e-01	k: 719650	n:3040000
KS ci ratio: 8.765356e-01	ci left: 3.762912e-06	ci right 9.760132e-06	k: 19	n:3040000
KLK2   3040000 perm   4631 sec   (656 perm/sec)   p_kst 6.250000e-06   p_cons 2.367270e-01   p_joint 6.907895e-06

Joint ci ratio: 8.357437e-01	ci left: 4.262081e-06	ci right 1.052481e-05	k: 21	n:3050000
Cons ci ratio: 4.030475e-03	ci left: 2.362463e-01	ci right 2.372007e-01	k: 722006	n:3050000
KS ci ratio: 8.765356e-01	ci left: 3.750575e-06	ci right 9.728132e-06	k: 19	n:3050000
KLK2   3050000 perm   4660 sec   (654 perm/sec)   p_kst 6.229508e-06   p_cons 2.367233e-01   p_joint 6.885246e-06

Joint ci ratio: 8.357437e-01	ci left: 4.248152e-06	ci right 1.049042e-05	k: 21	n:3060000
Cons ci ratio: 4.023688e-03	ci left: 2.362647e-01	ci right 2.372175e-01	k: 724427	n:3060000
KS ci ratio: 8.765356e-01	ci left: 3.738318e-06	ci right 9.696340e-06	k: 19	n:3060000
KLK2   3060000 perm   4689 sec   (653 perm/sec)   p_kst 6.209150e-06   p_cons 2.367408e-01   p_joint 6.862745e-06

Joint ci ratio: 8.357437e-01	ci left: 4.234315e-06	ci right 1.045625e-05	k: 21	n:3070000
Cons ci ratio: 4.017142e-03	ci left: 2.362643e-01	ci right 2.372157e-01	k: 726791	n:3070000
KS ci ratio: 8.765356e-01	ci left: 3.726141e-06	ci right 9.664756e-06	k: 19	n:3070000
KLK2   3070000 perm   4718 sec   (651 perm/sec)   p_kst 6.188925e-06   p_cons 2.367397e-01   p_joint 6.840391e-06

Joint ci ratio: 8.357437e-01	ci left: 4.220567e-06	ci right 1.042230e-05	k: 21	n:3080000
Cons ci ratio: 4.010758e-03	ci left: 2.362523e-01	ci right 2.372021e-01	k: 729119	n:3080000
KS ci ratio: 8.765357e-01	ci left: 3.714043e-06	ci right 9.633377e-06	k: 19	n:3080000
KLK2   3080000 perm   4747 sec   (649 perm/sec)   p_kst 6.168831e-06   p_cons 2.367269e-01   p_joint 6.818182e-06

Joint ci ratio: 8.357437e-01	ci left: 4.206908e-06	ci right 1.038857e-05	k: 21	n:3090000
Cons ci ratio: 4.004012e-03	ci left: 2.362756e-01	ci right 2.372239e-01	k: 731556	n:3090000
KS ci ratio: 8.765357e-01	ci left: 3.702024e-06	ci right 9.602201e-06	k: 19	n:3090000
KLK2   3090000 perm   4776 sec   (647 perm/sec)   p_kst 6.148867e-06   p_cons 2.367495e-01   p_joint 6.796117e-06

Joint ci ratio: 8.357437e-01	ci left: 4.193337e-06	ci right 1.035506e-05	k: 21	n:3100000
Cons ci ratio: 3.997672e-03	ci left: 2.362653e-01	ci right 2.372120e-01	k: 733889	n:3100000
KS ci ratio: 8.765357e-01	ci left: 3.690082e-06	ci right 9.571227e-06	k: 19	n:3100000
KLK2   3100000 perm   4806 sec   (645 perm/sec)   p_kst 6.129032e-06   p_cons 2.367384e-01   p_joint 6.774194e-06

Joint ci ratio: 8.357437e-01	ci left: 4.179854e-06	ci right 1.032176e-05	k: 21	n:3110000
Cons ci ratio: 3.991294e-03	ci left: 2.362611e-01	ci right 2.372063e-01	k: 736241	n:3110000
KS ci ratio: 8.765357e-01	ci left: 3.678216e-06	ci right 9.540451e-06	k: 19	n:3110000
KLK2   3110000 perm   4835 sec   (643 perm/sec)   p_kst 6.109325e-06   p_cons 2.367334e-01   p_joint 6.752412e-06

Joint ci ratio: 8.357437e-01	ci left: 4.166457e-06	ci right 1.028868e-05	k: 21	n:3120000
Cons ci ratio: 3.984894e-03	ci left: 2.362617e-01	ci right 2.372054e-01	k: 738608	n:3120000
KS ci ratio: 8.765357e-01	ci left: 3.666427e-06	ci right 9.509873e-06	k: 19	n:3120000
KLK2   3120000 perm   4864 sec   (641 perm/sec)   p_kst 6.089744e-06   p_cons 2.367333e-01   p_joint 6.730769e-06

Joint ci ratio: 8.173734e-01	ci left: 4.404888e-06	ci right 1.064160e-05	k: 22	n:3130000
Cons ci ratio: 3.978581e-03	ci left: 2.362573e-01	ci right 2.371994e-01	k: 740959	n:3130000
KS ci ratio: 8.554111e-01	ci left: 3.903046e-06	ci right 9.868474e-06	k: 20	n:3130000
KLK2   3130000 perm   4893 sec   (640 perm/sec)   p_kst 6.389776e-06   p_cons 2.367281e-01   p_joint 7.028754e-06

Joint ci ratio: 8.993068e-01	ci left: 3.397437e-06	ci right 9.059781e-06	k: 18	n:3140000
Cons ci ratio: 3.972256e-03	ci left: 2.362567e-01	ci right 2.371973e-01	k: 743322	n:3140000
KS ci ratio: 8.173734e-01	ci left: 4.390859e-06	ci right 1.060771e-05	k: 22	n:3140000
KLK2   3140000 perm   4923 sec   (638 perm/sec)   p_kst 7.006369e-06   p_cons 2.367268e-01   p_joint 5.732484e-06

Joint ci ratio: 8.993068e-01	ci left: 3.386651e-06	ci right 9.031020e-06	k: 18	n:3150000
Cons ci ratio: 3.966079e-03	ci left: 2.362453e-01	ci right 2.371844e-01	k: 745651	n:3150000
KS ci ratio: 8.173734e-01	ci left: 4.376920e-06	ci right 1.057403e-05	k: 22	n:3150000
KLK2   3150000 perm   4952 sec   (636 perm/sec)   p_kst 6.984127e-06   p_cons 2.367146e-01   p_joint 5.714286e-06

Joint ci ratio: 8.993068e-01	ci left: 3.375934e-06	ci right 9.002441e-06	k: 18	n:3160000
Cons ci ratio: 3.959733e-03	ci left: 2.362520e-01	ci right 2.371896e-01	k: 748037	n:3160000
KS ci ratio: 8.173734e-01	ci left: 4.363069e-06	ci right 1.054057e-05	k: 22	n:3160000
KLK2   3160000 perm   4982 sec   (634 perm/sec)   p_kst 6.962025e-06   p_cons 2.367206e-01   p_joint 5.696203e-06

Joint ci ratio: 8.993068e-01	ci left: 3.365284e-06	ci right 8.974042e-06	k: 18	n:3170000
Cons ci ratio: 3.953607e-03	ci left: 2.362413e-01	ci right 2.371775e-01	k: 750368	n:3170000
KS ci ratio: 8.001635e-01	ci left: 4.599383e-06	ci right 1.088682e-05	k: 23	n:3170000
KLK2   3170000 perm   5012 sec   (633 perm/sec)   p_kst 7.255521e-06   p_cons 2.367091e-01   p_joint 5.678233e-06

Joint ci ratio: 8.993068e-01	ci left: 3.354702e-06	ci right 8.945822e-06	k: 18	n:3180000
Cons ci ratio: 3.947438e-03	ci left: 2.362373e-01	ci right 2.371720e-01	k: 752720	n:3180000
KS ci ratio: 8.001635e-01	ci left: 4.584920e-06	ci right 1.085259e-05	k: 23	n:3180000
KLK2   3180000 perm   5042 sec   (631 perm/sec)   p_kst 7.232704e-06   p_cons 2.367044e-01   p_joint 5.660377e-06

Joint ci ratio: 8.993069e-01	ci left: 3.344185e-06	ci right 8.917779e-06	k: 18	n:3190000
Cons ci ratio: 3.941431e-03	ci left: 2.362211e-01	ci right 2.371543e-01	k: 755033	n:3190000
KS ci ratio: 8.001635e-01	ci left: 4.570547e-06	ci right 1.081857e-05	k: 23	n:3190000
KLK2   3190000 perm   5071 sec   (629 perm/sec)   p_kst 7.210031e-06   p_cons 2.366875e-01   p_joint 5.642633e-06

Joint ci ratio: 8.993069e-01	ci left: 3.333735e-06	ci right 8.889911e-06	k: 18	n:3200000
Cons ci ratio: 3.935287e-03	ci left: 2.362200e-01	ci right 2.371517e-01	k: 757394	n:3200000
KS ci ratio: 8.001635e-01	ci left: 4.556264e-06	ci right 1.078476e-05	k: 23	n:3200000
KLK2   3200000 perm   5102 sec   (627 perm/sec)   p_kst 7.187500e-06   p_cons 2.366856e-01   p_joint 5.625000e-06

Joint ci ratio: 8.993069e-01	ci left: 3.323349e-06	ci right 8.862216e-06	k: 18	n:3210000
Cons ci ratio: 3.929122e-03	ci left: 2.362236e-01	ci right 2.371538e-01	k: 759770	n:3210000
KS ci ratio: 8.001635e-01	ci left: 4.542070e-06	ci right 1.075116e-05	k: 23	n:3210000
KLK2   3210000 perm   5132 sec   (626 perm/sec)   p_kst 7.165109e-06   p_cons 2.366885e-01   p_joint 5.607477e-06

Joint ci ratio: 8.993069e-01	ci left: 3.313028e-06	ci right 8.834694e-06	k: 18	n:3220000
Cons ci ratio: 3.922958e-03	ci left: 2.362296e-01	ci right 2.371584e-01	k: 762154	n:3220000
KS ci ratio: 8.001635e-01	ci left: 4.527964e-06	ci right 1.071777e-05	k: 23	n:3220000
KLK2   3220000 perm   5162 sec   (624 perm/sec)   p_kst 7.142857e-06   p_cons 2.366938e-01   p_joint 5.590062e-06

Joint ci ratio: 8.993069e-01	ci left: 3.302771e-06	ci right 8.807342e-06	k: 18	n:3230000
Cons ci ratio: 3.916565e-03	ci left: 2.362594e-01	ci right 2.371869e-01	k: 764615	n:3230000
KS ci ratio: 8.001636e-01	ci left: 4.513945e-06	ci right 1.068459e-05	k: 23	n:3230000
KLK2   3230000 perm   5193 sec   (622 perm/sec)   p_kst 7.120743e-06   p_cons 2.367229e-01   p_joint 5.572755e-06

Joint ci ratio: 8.993069e-01	ci left: 3.292578e-06	ci right 8.780159e-06	k: 18	n:3240000
Cons ci ratio: 3.910304e-03	ci left: 2.362798e-01	ci right 2.372058e-01	k: 767046	n:3240000
KS ci ratio: 8.001636e-01	ci left: 4.500013e-06	ci right 1.065161e-05	k: 23	n:3240000
KLK2   3240000 perm   5223 sec   (620 perm/sec)   p_kst 7.098765e-06   p_cons 2.367426e-01   p_joint 5.555556e-06

Joint ci ratio: 8.993069e-01	ci left: 3.282447e-06	ci right 8.753143e-06	k: 18	n:3250000
Cons ci ratio: 3.904088e-03	ci left: 2.362985e-01	ci right 2.372232e-01	k: 769472	n:3250000
KS ci ratio: 8.001636e-01	ci left: 4.486167e-06	ci right 1.061884e-05	k: 23	n:3250000
KLK2   3250000 perm   5254 sec   (619 perm/sec)   p_kst 7.076923e-06   p_cons 2.367606e-01   p_joint 5.538462e-06

Joint ci ratio: 8.993069e-01	ci left: 3.272378e-06	ci right 8.726293e-06	k: 18	n:3260000
Cons ci ratio: 3.898283e-03	ci left: 2.362819e-01	ci right 2.372051e-01	k: 771783	n:3260000
KS ci ratio: 8.001636e-01	ci left: 4.472406e-06	ci right 1.058627e-05	k: 23	n:3260000
KLK2   3260000 perm   5286 sec   (617 perm/sec)   p_kst 7.055215e-06   p_cons 2.367433e-01   p_joint 5.521472e-06

Joint ci ratio: 8.993069e-01	ci left: 3.262370e-06	ci right 8.699607e-06	k: 18	n:3270000
Cons ci ratio: 3.892168e-03	ci left: 2.362965e-01	ci right 2.372183e-01	k: 774196	n:3270000
KS ci ratio: 8.001636e-01	ci left: 4.458729e-06	ci right 1.055389e-05	k: 23	n:3270000
KLK2   3270000 perm   5317 sec   (615 perm/sec)   p_kst 7.033639e-06   p_cons 2.367572e-01   p_joint 5.504587e-06

Joint ci ratio: 8.993069e-01	ci left: 3.252424e-06	ci right 8.673084e-06	k: 18	n:3280000
Cons ci ratio: 3.886186e-03	ci left: 2.363013e-01	ci right 2.372217e-01	k: 776577	n:3280000
KS ci ratio: 8.001636e-01	ci left: 4.445135e-06	ci right 1.052172e-05	k: 23	n:3280000
KLK2   3280000 perm   5348 sec   (613 perm/sec)   p_kst 7.012195e-06   p_cons 2.367613e-01   p_joint 5.487805e-06

Joint ci ratio: 8.993069e-01	ci left: 3.242538e-06	ci right 8.646722e-06	k: 18	n:3290000
Cons ci ratio: 3.880310e-03	ci left: 2.362988e-01	ci right 2.372178e-01	k: 778934	n:3290000
KS ci ratio: 7.839969e-01	ci left: 4.673942e-06	ci right 1.085411e-05	k: 24	n:3290000
KLK2   3290000 perm   5379 sec   (612 perm/sec)   p_kst 7.294833e-06   p_cons 2.367581e-01   p_joint 5.471125e-06

Joint ci ratio: 8.993070e-01	ci left: 3.232712e-06	ci right 8.620520e-06	k: 18	n:3300000
Cons ci ratio: 3.874429e-03	ci left: 2.362993e-01	ci right 2.372169e-01	k: 781301	n:3300000
KS ci ratio: 7.839969e-01	ci left: 4.659779e-06	ci right 1.082122e-05	k: 24	n:3300000
KLK2   3300000 perm   5410 sec   (610 perm/sec)   p_kst 7.272727e-06   p_cons 2.367579e-01   p_joint 5.454545e-06

Joint ci ratio: 8.993070e-01	ci left: 3.222946e-06	ci right 8.594476e-06	k: 18	n:3310000
Cons ci ratio: 3.868609e-03	ci left: 2.362965e-01	ci right 2.372127e-01	k: 783657	n:3310000
KS ci ratio: 7.839969e-01	ci left: 4.645701e-06	ci right 1.078853e-05	k: 24	n:3310000
KLK2   3310000 perm   5442 sec   (608 perm/sec)   p_kst 7.250755e-06   p_cons 2.367544e-01   p_joint 5.438066e-06

Joint ci ratio: 8.993070e-01	ci left: 3.213238e-06	ci right 8.568589e-06	k: 18	n:3320000
Cons ci ratio: 3.862516e-03	ci left: 2.363217e-01	ci right 2.372366e-01	k: 786106	n:3320000
KS ci ratio: 7.839969e-01	ci left: 4.631708e-06	ci right 1.075603e-05	k: 24	n:3320000
KLK2   3320000 perm   5474 sec   (606 perm/sec)   p_kst 7.228916e-06   p_cons 2.367789e-01   p_joint 5.421687e-06

Joint ci ratio: 8.993070e-01	ci left: 3.203589e-06	ci right 8.542858e-06	k: 18	n:3330000
Cons ci ratio: 3.856824e-03	ci left: 2.363120e-01	ci right 2.372254e-01	k: 788439	n:3330000
KS ci ratio: 7.839969e-01	ci left: 4.617799e-06	ci right 1.072373e-05	k: 24	n:3330000
KLK2   3330000 perm   5506 sec   (605 perm/sec)   p_kst 7.207207e-06   p_cons 2.367685e-01   p_joint 5.405405e-06

Joint ci ratio: 8.993070e-01	ci left: 3.193997e-06	ci right 8.517280e-06	k: 18	n:3340000
Cons ci ratio: 3.850805e-03	ci left: 2.363352e-01	ci right 2.372473e-01	k: 790882	n:3340000
KS ci ratio: 7.839969e-01	ci left: 4.603973e-06	ci right 1.069163e-05	k: 24	n:3340000
KLK2   3340000 perm   5537 sec   (603 perm/sec)   p_kst 7.185629e-06   p_cons 2.367910e-01   p_joint 5.389222e-06

Joint ci ratio: 8.993070e-01	ci left: 3.184463e-06	ci right 8.491856e-06	k: 18	n:3350000
Cons ci ratio: 3.844904e-03	ci left: 2.363499e-01	ci right 2.372607e-01	k: 793297	n:3350000
KS ci ratio: 7.839970e-01	ci left: 4.590230e-06	ci right 1.065971e-05	k: 24	n:3350000
KLK2   3350000 perm   5568 sec   (602 perm/sec)   p_kst 7.164179e-06   p_cons 2.368051e-01   p_joint 5.373134e-06

Joint ci ratio: 8.993070e-01	ci left: 3.174985e-06	ci right 8.466582e-06	k: 18	n:3360000
Cons ci ratio: 3.839283e-03	ci left: 2.363408e-01	ci right 2.372502e-01	k: 795632	n:3360000
KS ci ratio: 7.839970e-01	ci left: 4.576569e-06	ci right 1.062799e-05	k: 24	n:3360000
KLK2   3360000 perm   5600 sec   (600 perm/sec)   p_kst 7.142857e-06   p_cons 2.367952e-01   p_joint 5.357143e-06

Joint ci ratio: 8.993070e-01	ci left: 3.165564e-06	ci right 8.441459e-06	k: 18	n:3370000
Cons ci ratio: 3.833774e-03	ci left: 2.363234e-01	ci right 2.372314e-01	k: 797939	n:3370000
KS ci ratio: 7.839970e-01	ci left: 4.562988e-06	ci right 1.059645e-05	k: 24	n:3370000
KLK2   3370000 perm   5632 sec   (598 perm/sec)   p_kst 7.121662e-06   p_cons 2.367772e-01   p_joint 5.341246e-06

Joint ci ratio: 8.993070e-01	ci left: 3.156198e-06	ci right 8.416484e-06	k: 18	n:3380000
Cons ci ratio: 3.827998e-03	ci left: 2.363336e-01	ci right 2.372403e-01	k: 800339	n:3380000
KS ci ratio: 7.839970e-01	ci left: 4.549488e-06	ci right 1.056510e-05	k: 24	n:3380000
KLK2   3380000 perm   5665 sec   (597 perm/sec)   p_kst 7.100592e-06   p_cons 2.367867e-01   p_joint 5.325444e-06

Joint ci ratio: 8.993070e-01	ci left: 3.146888e-06	ci right 8.391657e-06	k: 18	n:3390000
Cons ci ratio: 3.822254e-03	ci left: 2.363431e-01	ci right 2.372485e-01	k: 802737	n:3390000
KS ci ratio: 7.839970e-01	ci left: 4.536068e-06	ci right 1.053393e-05	k: 24	n:3390000
KLK2   3390000 perm   5697 sec   (595 perm/sec)   p_kst 7.079646e-06   p_cons 2.367956e-01   p_joint 5.309735e-06

Joint ci ratio: 8.993070e-01	ci left: 3.137633e-06	ci right 8.366975e-06	k: 18	n:3400000
Cons ci ratio: 3.816780e-03	ci left: 2.363294e-01	ci right 2.372334e-01	k: 805056	n:3400000
KS ci ratio: 7.839970e-01	ci left: 4.522726e-06	ci right 1.050295e-05	k: 24	n:3400000
KLK2   3400000 perm   5729 sec   (593 perm/sec)   p_kst 7.058824e-06   p_cons 2.367812e-01   p_joint 5.294118e-06

Joint ci ratio: 8.993070e-01	ci left: 3.128431e-06	ci right 8.342439e-06	k: 18	n:3410000
Cons ci ratio: 3.811164e-03	ci left: 2.363316e-01	ci right 2.372343e-01	k: 807429	n:3410000
KS ci ratio: 7.839970e-01	ci left: 4.509463e-06	ci right 1.047215e-05	k: 24	n:3410000
KLK2   3410000 perm   5761 sec   (592 perm/sec)   p_kst 7.038123e-06   p_cons 2.367827e-01   p_joint 5.278592e-06

Joint ci ratio: 8.993070e-01	ci left: 3.119284e-06	ci right 8.318046e-06	k: 18	n:3420000
Cons ci ratio: 3.805557e-03	ci left: 2.363352e-01	ci right 2.372366e-01	k: 809807	n:3420000
KS ci ratio: 7.839970e-01	ci left: 4.496278e-06	ci right 1.044153e-05	k: 24	n:3420000
KLK2   3420000 perm   5793 sec   (590 perm/sec)   p_kst 7.017544e-06   p_cons 2.367857e-01   p_joint 5.263158e-06

Joint ci ratio: 8.993071e-01	ci left: 3.110190e-06	ci right 8.293795e-06	k: 18	n:3430000
Cons ci ratio: 3.799995e-03	ci left: 2.363368e-01	ci right 2.372368e-01	k: 812178	n:3430000
KS ci ratio: 7.839970e-01	ci left: 4.483169e-06	ci right 1.041109e-05	k: 24	n:3430000
KLK2   3430000 perm   5828 sec   (589 perm/sec)   p_kst 6.997085e-06   p_cons 2.367866e-01   p_joint 5.247813e-06

Joint ci ratio: 8.993071e-01	ci left: 3.101148e-06	ci right 8.269685e-06	k: 18	n:3440000
Cons ci ratio: 3.794334e-03	ci left: 2.363503e-01	ci right 2.372490e-01	k: 814590	n:3440000
KS ci ratio: 7.839970e-01	ci left: 4.470137e-06	ci right 1.038082e-05	k: 24	n:3440000
KLK2   3440000 perm   5861 sec   (587 perm/sec)   p_kst 6.976744e-06   p_cons 2.367994e-01   p_joint 5.232558e-06

Joint ci ratio: 8.993071e-01	ci left: 3.092160e-06	ci right 8.245715e-06	k: 18	n:3450000
Cons ci ratio: 3.788840e-03	ci left: 2.363500e-01	ci right 2.372475e-01	k: 816955	n:3450000
KS ci ratio: 7.839970e-01	ci left: 4.457180e-06	ci right 1.035074e-05	k: 24	n:3450000
KLK2   3450000 perm   5894 sec   (585 perm/sec)   p_kst 6.956522e-06   p_cons 2.367986e-01   p_joint 5.217391e-06

Joint ci ratio: 8.993071e-01	ci left: 3.083223e-06	ci right 8.221884e-06	k: 18	n:3460000
Cons ci ratio: 3.783179e-03	ci left: 2.363680e-01	ci right 2.372642e-01	k: 819383	n:3460000
KS ci ratio: 7.839971e-01	ci left: 4.444298e-06	ci right 1.032082e-05	k: 24	n:3460000
KLK2   3460000 perm   5926 sec   (584 perm/sec)   p_kst 6.936416e-06   p_cons 2.368159e-01   p_joint 5.202312e-06

Joint ci ratio: 8.993071e-01	ci left: 3.074337e-06	ci right 8.198189e-06	k: 18	n:3470000
Cons ci ratio: 3.777724e-03	ci left: 2.363686e-01	ci right 2.372635e-01	k: 821751	n:3470000
KS ci ratio: 7.839971e-01	ci left: 4.431490e-06	ci right 1.029108e-05	k: 24	n:3470000
KLK2   3470000 perm   5959 sec   (582 perm/sec)   p_kst 6.916427e-06   p_cons 2.368159e-01   p_joint 5.187320e-06

Joint ci ratio: 8.993071e-01	ci left: 3.065503e-06	ci right 8.174631e-06	k: 18	n:3480000
Cons ci ratio: 3.772302e-03	ci left: 2.363684e-01	ci right 2.372620e-01	k: 824116	n:3480000
KS ci ratio: 7.839971e-01	ci left: 4.418756e-06	ci right 1.026151e-05	k: 24	n:3480000
KLK2   3480000 perm   5991 sec   (581 perm/sec)   p_kst 6.896552e-06   p_cons 2.368149e-01   p_joint 5.172414e-06

Joint ci ratio: 8.993071e-01	ci left: 3.056719e-06	ci right 8.151209e-06	k: 18	n:3490000
Cons ci ratio: 3.766882e-03	ci left: 2.363701e-01	ci right 2.372624e-01	k: 826488	n:3490000
KS ci ratio: 7.839971e-01	ci left: 4.406094e-06	ci right 1.023210e-05	k: 24	n:3490000
KLK2   3490000 perm   6023 sec   (579 perm/sec)   p_kst 6.876791e-06   p_cons 2.368160e-01   p_joint 5.157593e-06

Joint ci ratio: 8.993071e-01	ci left: 3.047986e-06	ci right 8.127919e-06	k: 18	n:3500000
Cons ci ratio: 3.761420e-03	ci left: 2.363781e-01	ci right 2.372692e-01	k: 828882	n:3500000
KS ci ratio: 7.839971e-01	ci left: 4.393506e-06	ci right 1.020287e-05	k: 24	n:3500000
KLK2   3500000 perm   6056 sec   (578 perm/sec)   p_kst 6.857143e-06   p_cons 2.368234e-01   p_joint 5.142857e-06

Joint ci ratio: 8.993071e-01	ci left: 3.039302e-06	ci right 8.104763e-06	k: 18	n:3510000
Cons ci ratio: 3.756015e-03	ci left: 2.363830e-01	ci right 2.372728e-01	k: 831265	n:3510000
KS ci ratio: 7.839971e-01	ci left: 4.380988e-06	ci right 1.017380e-05	k: 24	n:3510000
KLK2   3510000 perm   6088 sec   (577 perm/sec)   p_kst 6.837607e-06   p_cons 2.368276e-01   p_joint 5.128205e-06

Joint ci ratio: 8.993071e-01	ci left: 3.030668e-06	ci right 8.081738e-06	k: 18	n:3520000
Cons ci ratio: 3.750706e-03	ci left: 2.363807e-01	ci right 2.372692e-01	k: 833623	n:3520000
KS ci ratio: 7.839971e-01	ci left: 4.368542e-06	ci right 1.014490e-05	k: 24	n:3520000
KLK2   3520000 perm   6121 sec   (575 perm/sec)   p_kst 6.818182e-06   p_cons 2.368247e-01   p_joint 5.113636e-06

Joint ci ratio: 8.993071e-01	ci left: 3.022082e-06	ci right 8.058844e-06	k: 18	n:3530000
Cons ci ratio: 3.745502e-03	ci left: 2.363705e-01	ci right 2.372577e-01	k: 835953	n:3530000
KS ci ratio: 7.839971e-01	ci left: 4.356167e-06	ci right 1.011616e-05	k: 24	n:3530000
KLK2   3530000 perm   6154 sec   (574 perm/sec)   p_kst 6.798867e-06   p_cons 2.368139e-01   p_joint 5.099150e-06

Joint ci ratio: 8.993071e-01	ci left: 3.013545e-06	ci right 8.036079e-06	k: 18	n:3540000
Cons ci ratio: 3.740322e-03	ci left: 2.363600e-01	ci right 2.372460e-01	k: 838282	n:3540000
KS ci ratio: 7.839971e-01	ci left: 4.343861e-06	ci right 1.008758e-05	k: 24	n:3540000
KLK2   3540000 perm   6187 sec   (572 perm/sec)   p_kst 6.779661e-06   p_cons 2.368028e-01   p_joint 5.084746e-06

Joint ci ratio: 8.993071e-01	ci left: 3.005056e-06	ci right 8.013442e-06	k: 18	n:3550000
Cons ci ratio: 3.735228e-03	ci left: 2.363435e-01	ci right 2.372282e-01	k: 840589	n:3550000
KS ci ratio: 7.839971e-01	ci left: 4.331625e-06	ci right 1.005917e-05	k: 24	n:3550000
KLK2   3550000 perm   6219 sec   (571 perm/sec)   p_kst 6.760563e-06   p_cons 2.367856e-01   p_joint 5.070423e-06

Joint ci ratio: 8.993072e-01	ci left: 2.996615e-06	ci right 7.990932e-06	k: 18	n:3560000
Cons ci ratio: 3.729969e-03	ci left: 2.363450e-01	ci right 2.372285e-01	k: 842960	n:3560000
KS ci ratio: 7.839971e-01	ci left: 4.319458e-06	ci right 1.003091e-05	k: 24	n:3560000
KLK2   3560000 perm   6251 sec   (570 perm/sec)   p_kst 6.741573e-06   p_cons 2.367865e-01   p_joint 5.056180e-06

Joint ci ratio: 8.993072e-01	ci left: 2.988221e-06	ci right 7.968549e-06	k: 18	n:3570000
Cons ci ratio: 3.724680e-03	ci left: 2.363515e-01	ci right 2.372338e-01	k: 845349	n:3570000
KS ci ratio: 7.839971e-01	ci left: 4.307358e-06	ci right 1.000281e-05	k: 24	n:3570000
KLK2   3570000 perm   6284 sec   (568 perm/sec)   p_kst 6.722689e-06   p_cons 2.367924e-01   p_joint 5.042017e-06

Joint ci ratio: 8.993072e-01	ci left: 2.979874e-06	ci right 7.946290e-06	k: 18	n:3580000
Cons ci ratio: 3.719486e-03	ci left: 2.363511e-01	ci right 2.372321e-01	k: 847713	n:3580000
KS ci ratio: 7.687724e-01	ci left: 4.519190e-06	ci right 1.030862e-05	k: 25	n:3580000
KLK2   3580000 perm   6317 sec   (567 perm/sec)   p_kst 6.983240e-06   p_cons 2.367913e-01   p_joint 5.027933e-06

Joint ci ratio: 8.993072e-01	ci left: 2.971574e-06	ci right 7.924156e-06	k: 18	n:3590000
Cons ci ratio: 3.714230e-03	ci left: 2.363586e-01	ci right 2.372384e-01	k: 850106	n:3590000
KS ci ratio: 7.687724e-01	ci left: 4.506602e-06	ci right 1.027991e-05	k: 25	n:3590000
KLK2   3590000 perm   6350 sec   (565 perm/sec)   p_kst 6.963788e-06   p_cons 2.367983e-01   p_joint 5.013928e-06

Joint ci ratio: 8.993072e-01	ci left: 2.963319e-06	ci right 7.902144e-06	k: 18	n:3600000
Cons ci ratio: 3.709025e-03	ci left: 2.363634e-01	ci right 2.372420e-01	k: 852489	n:3600000
KS ci ratio: 7.687724e-01	ci left: 4.494083e-06	ci right 1.025135e-05	k: 25	n:3600000
KLK2   3600000 perm   6382 sec   (564 perm/sec)   p_kst 6.944444e-06   p_cons 2.368025e-01   p_joint 5.000000e-06

Joint ci ratio: 8.993072e-01	ci left: 2.955111e-06	ci right 7.880255e-06	k: 18	n:3610000
Cons ci ratio: 3.703825e-03	ci left: 2.363698e-01	ci right 2.372472e-01	k: 854878	n:3610000
KS ci ratio: 7.687724e-01	ci left: 4.481634e-06	ci right 1.022296e-05	k: 25	n:3610000
KLK2   3610000 perm   6415 sec   (563 perm/sec)   p_kst 6.925208e-06   p_cons 2.368083e-01   p_joint 4.986150e-06

Joint ci ratio: 8.993072e-01	ci left: 2.946948e-06	ci right 7.858486e-06	k: 18	n:3620000
Cons ci ratio: 3.698819e-03	ci left: 2.363594e-01	ci right 2.372355e-01	k: 857206	n:3620000
KS ci ratio: 7.687724e-01	ci left: 4.469254e-06	ci right 1.019472e-05	k: 25	n:3620000
KLK2   3620000 perm   6448 sec   (561 perm/sec)   p_kst 6.906077e-06   p_cons 2.367972e-01   p_joint 4.972376e-06

Joint ci ratio: 8.993072e-01	ci left: 2.938829e-06	ci right 7.836837e-06	k: 18	n:3630000
Cons ci ratio: 3.693645e-03	ci left: 2.363674e-01	ci right 2.372424e-01	k: 859601	n:3630000
KS ci ratio: 7.687724e-01	ci left: 4.456942e-06	ci right 1.016663e-05	k: 25	n:3630000
KLK2   3630000 perm   6481 sec   (560 perm/sec)   p_kst 6.887052e-06   p_cons 2.368047e-01   p_joint 4.958678e-06

Joint ci ratio: 8.993072e-01	ci left: 2.930756e-06	ci right 7.815308e-06	k: 18	n:3640000
Cons ci ratio: 3.688444e-03	ci left: 2.363801e-01	ci right 2.372538e-01	k: 862013	n:3640000
KS ci ratio: 7.687724e-01	ci left: 4.444698e-06	ci right 1.013870e-05	k: 25	n:3640000
KLK2   3640000 perm   6515 sec   (559 perm/sec)   p_kst 6.868132e-06   p_cons 2.368168e-01   p_joint 4.945055e-06

Joint ci ratio: 8.993072e-01	ci left: 2.922726e-06	ci right 7.793896e-06	k: 18	n:3650000
Cons ci ratio: 3.683260e-03	ci left: 2.363932e-01	ci right 2.372658e-01	k: 864427	n:3650000
KS ci ratio: 7.687724e-01	ci left: 4.432520e-06	ci right 1.011092e-05	k: 25	n:3650000
KLK2   3650000 perm   6548 sec   (557 perm/sec)   p_kst 6.849315e-06   p_cons 2.368293e-01   p_joint 4.931507e-06

Joint ci ratio: 8.993072e-01	ci left: 2.914740e-06	ci right 7.772601e-06	k: 18	n:3660000
Cons ci ratio: 3.678287e-03	ci left: 2.363878e-01	ci right 2.372591e-01	k: 866773	n:3660000
KS ci ratio: 7.687724e-01	ci left: 4.420410e-06	ci right 1.008330e-05	k: 25	n:3660000
KLK2   3660000 perm   6582 sec   (556 perm/sec)   p_kst 6.830601e-06   p_cons 2.368232e-01   p_joint 4.918033e-06

Joint ci ratio: 8.765361e-01	ci left: 3.116962e-06	ci right 8.084689e-06	k: 19	n:3670000
Cons ci ratio: 3.673422e-03	ci left: 2.363736e-01	ci right 2.372437e-01	k: 869087	n:3670000
KS ci ratio: 7.687724e-01	ci left: 4.408365e-06	ci right 1.005582e-05	k: 25	n:3670000
KLK2   3670000 perm   6618 sec   (555 perm/sec)   p_kst 6.811989e-06   p_cons 2.368084e-01   p_joint 5.177112e-06

Joint ci ratio: 8.765361e-01	ci left: 3.108492e-06	ci right 8.062720e-06	k: 19	n:3680000
Cons ci ratio: 3.668525e-03	ci left: 2.363646e-01	ci right 2.372336e-01	k: 871420	n:3680000
KS ci ratio: 7.687724e-01	ci left: 4.396386e-06	ci right 1.002850e-05	k: 25	n:3680000
KLK2   3680000 perm   6652 sec   (553 perm/sec)   p_kst 6.793478e-06   p_cons 2.367989e-01   p_joint 5.163043e-06

Joint ci ratio: 8.765362e-01	ci left: 3.100068e-06	ci right 8.040870e-06	k: 19	n:3690000
Cons ci ratio: 3.663509e-03	ci left: 2.363693e-01	ci right 2.372371e-01	k: 873803	n:3690000
KS ci ratio: 7.687724e-01	ci left: 4.384471e-06	ci right 1.000132e-05	k: 25	n:3690000
KLK2   3690000 perm   6686 sec   (552 perm/sec)   p_kst 6.775068e-06   p_cons 2.368030e-01   p_joint 5.149051e-06

Joint ci ratio: 8.765362e-01	ci left: 3.091690e-06	ci right 8.019138e-06	k: 19	n:3700000
Cons ci ratio: 3.658607e-03	ci left: 2.363647e-01	ci right 2.372313e-01	k: 876152	n:3700000
KS ci ratio: 7.687724e-01	ci left: 4.372621e-06	ci right 9.974290e-06	k: 25	n:3700000
KLK2   3700000 perm   6722 sec   (550 perm/sec)   p_kst 6.756757e-06   p_cons 2.367978e-01   p_joint 5.135135e-06

Joint ci ratio: 8.765362e-01	ci left: 3.083356e-06	ci right 7.997523e-06	k: 19	n:3710000
Cons ci ratio: 3.653788e-03	ci left: 2.363540e-01	ci right 2.372194e-01	k: 878478	n:3710000
KS ci ratio: 7.687725e-01	ci left: 4.360835e-06	ci right 9.947405e-06	k: 25	n:3710000
KLK2   3710000 perm   6757 sec   (549 perm/sec)   p_kst 6.738544e-06   p_cons 2.367865e-01   p_joint 5.121294e-06

Joint ci ratio: 8.765362e-01	ci left: 3.075068e-06	ci right 7.976024e-06	k: 19	n:3720000
Cons ci ratio: 3.648854e-03	ci left: 2.363565e-01	ci right 2.372208e-01	k: 880853	n:3720000
KS ci ratio: 7.687725e-01	ci left: 4.349113e-06	ci right 9.920665e-06	k: 25	n:3720000
KLK2   3720000 perm   6791 sec   (548 perm/sec)   p_kst 6.720430e-06   p_cons 2.367884e-01   p_joint 5.107527e-06

Joint ci ratio: 8.554116e-01	ci left: 3.275209e-06	ci right 8.281054e-06	k: 20	n:3730000
Cons ci ratio: 3.644000e-03	ci left: 2.363531e-01	ci right 2.372162e-01	k: 883206	n:3730000
KS ci ratio: 7.544015e-01	ci left: 4.553373e-06	ci right 1.021339e-05	k: 26	n:3730000
KLK2   3730000 perm   6826 sec   (546 perm/sec)   p_kst 6.970509e-06   p_cons 2.367845e-01   p_joint 5.361930e-06

Joint ci ratio: 8.554116e-01	ci left: 3.266452e-06	ci right 8.258913e-06	k: 20	n:3740000
Cons ci ratio: 3.639259e-03	ci left: 2.363404e-01	ci right 2.372023e-01	k: 885524	n:3740000
KS ci ratio: 7.544015e-01	ci left: 4.541198e-06	ci right 1.018609e-05	k: 26	n:3740000
KLK2   3740000 perm   6861 sec   (545 perm/sec)   p_kst 6.951872e-06   p_cons 2.367711e-01   p_joint 5.347594e-06

Joint ci ratio: 8.554116e-01	ci left: 3.257742e-06	ci right 8.236889e-06	k: 20	n:3750000
Cons ci ratio: 3.634341e-03	ci left: 2.363471e-01	ci right 2.372079e-01	k: 887915	n:3750000
KS ci ratio: 7.544015e-01	ci left: 4.529088e-06	ci right 1.015892e-05	k: 26	n:3750000
KLK2   3750000 perm   6896 sec   (544 perm/sec)   p_kst 6.933333e-06   p_cons 2.367773e-01   p_joint 5.333333e-06

Joint ci ratio: 8.554116e-01	ci left: 3.249077e-06	ci right 8.214982e-06	k: 20	n:3760000
Cons ci ratio: 3.629488e-03	ci left: 2.363494e-01	ci right 2.372090e-01	k: 890289	n:3760000
KS ci ratio: 7.544015e-01	ci left: 4.517043e-06	ci right 1.013191e-05	k: 26	n:3760000
KLK2   3760000 perm   6931 sec   (542 perm/sec)   p_kst 6.914894e-06   p_cons 2.367790e-01   p_joint 5.319149e-06

Joint ci ratio: 8.357443e-01	ci left: 3.448102e-06	ci right 8.514770e-06	k: 21	n:3770000
Cons ci ratio: 3.624756e-03	ci left: 2.363415e-01	ci right 2.372000e-01	k: 892625	n:3770000
KS ci ratio: 7.408075e-01	ci left: 4.719679e-06	ci right 1.042003e-05	k: 27	n:3770000
KLK2   3770000 perm   6966 sec   (541 perm/sec)   p_kst 7.161804e-06   p_cons 2.367706e-01   p_joint 5.570292e-06

Joint ci ratio: 8.357443e-01	ci left: 3.438980e-06	ci right 8.492244e-06	k: 21	n:3780000
Cons ci ratio: 3.620111e-03	ci left: 2.363268e-01	ci right 2.371842e-01	k: 894935	n:3780000
KS ci ratio: 7.408075e-01	ci left: 4.707193e-06	ci right 1.039247e-05	k: 27	n:3780000
KLK2   3780000 perm   7002 sec   (540 perm/sec)   p_kst 7.142857e-06   p_cons 2.367553e-01   p_joint 5.555556e-06

Joint ci ratio: 8.357443e-01	ci left: 3.429906e-06	ci right 8.469837e-06	k: 21	n:3790000
Cons ci ratio: 3.615273e-03	ci left: 2.363333e-01	ci right 2.371895e-01	k: 897325	n:3790000
KS ci ratio: 7.408075e-01	ci left: 4.694773e-06	ci right 1.036504e-05	k: 27	n:3790000
KLK2   3790000 perm   7037 sec   (539 perm/sec)   p_kst 7.124011e-06   p_cons 2.367612e-01   p_joint 5.540897e-06

Joint ci ratio: 8.357443e-01	ci left: 3.420880e-06	ci right 8.447548e-06	k: 21	n:3800000
Cons ci ratio: 3.610504e-03	ci left: 2.363348e-01	ci right 2.371898e-01	k: 899696	n:3800000
KS ci ratio: 7.408075e-01	ci left: 4.682418e-06	ci right 1.033777e-05	k: 27	n:3800000
KLK2   3800000 perm   7072 sec   (537 perm/sec)   p_kst 7.105263e-06   p_cons 2.367621e-01   p_joint 5.526316e-06

Joint ci ratio: 8.357443e-01	ci left: 3.411901e-06	ci right 8.425376e-06	k: 21	n:3810000
Cons ci ratio: 3.605691e-03	ci left: 2.363425e-01	ci right 2.371965e-01	k: 902091	n:3810000
KS ci ratio: 7.408075e-01	ci left: 4.670128e-06	ci right 1.031063e-05	k: 27	n:3810000
KLK2   3810000 perm   7107 sec   (536 perm/sec)   p_kst 7.086614e-06   p_cons 2.367693e-01   p_joint 5.511811e-06

Joint ci ratio: 8.357443e-01	ci left: 3.402969e-06	ci right 8.403320e-06	k: 21	n:3820000
Cons ci ratio: 3.600944e-03	ci left: 2.363455e-01	ci right 2.371984e-01	k: 904468	n:3820000
KS ci ratio: 7.408076e-01	ci left: 4.657903e-06	ci right 1.028364e-05	k: 27	n:3820000
KLK2   3820000 perm   7143 sec   (535 perm/sec)   p_kst 7.068063e-06   p_cons 2.367717e-01   p_joint 5.497382e-06

Joint ci ratio: 8.357443e-01	ci left: 3.394084e-06	ci right 8.381380e-06	k: 21	n:3830000
Cons ci ratio: 3.596242e-03	ci left: 2.363459e-01	ci right 2.371976e-01	k: 906835	n:3830000
KS ci ratio: 7.408076e-01	ci left: 4.645741e-06	ci right 1.025679e-05	k: 27	n:3830000
KLK2   3830000 perm   7178 sec   (534 perm/sec)   p_kst 7.049608e-06   p_cons 2.367715e-01   p_joint 5.483029e-06

Joint ci ratio: 8.357443e-01	ci left: 3.385246e-06	ci right 8.359553e-06	k: 21	n:3840000
Cons ci ratio: 3.591692e-03	ci left: 2.363327e-01	ci right 2.371833e-01	k: 909150	n:3840000
KS ci ratio: 7.408076e-01	ci left: 4.633643e-06	ci right 1.023008e-05	k: 27	n:3840000
KLK2   3840000 perm   7213 sec   (532 perm/sec)   p_kst 7.031250e-06   p_cons 2.367578e-01   p_joint 5.468750e-06

Joint ci ratio: 8.357443e-01	ci left: 3.376453e-06	ci right 8.337840e-06	k: 21	n:3850000
Cons ci ratio: 3.587122e-03	ci left: 2.363235e-01	ci right 2.371730e-01	k: 911480	n:3850000
KS ci ratio: 7.279229e-01	ci left: 4.832680e-06	ci right 1.051110e-05	k: 28	n:3850000
KLK2   3850000 perm   7249 sec   (531 perm/sec)   p_kst 7.272727e-06   p_cons 2.367481e-01   p_joint 5.454545e-06

Joint ci ratio: 8.357443e-01	ci left: 3.367705e-06	ci right 8.316240e-06	k: 21	n:3860000
Cons ci ratio: 3.582489e-03	ci left: 2.363224e-01	ci right 2.371708e-01	k: 913841	n:3860000
KS ci ratio: 7.279229e-01	ci left: 4.820160e-06	ci right 1.048387e-05	k: 28	n:3860000
KLK2   3860000 perm   7283 sec   (530 perm/sec)   p_kst 7.253886e-06   p_cons 2.367464e-01   p_joint 5.440415e-06

Joint ci ratio: 8.357443e-01	ci left: 3.359003e-06	ci right 8.294751e-06	k: 21	n:3870000
Cons ci ratio: 3.577882e-03	ci left: 2.363205e-01	ci right 2.371678e-01	k: 916199	n:3870000
KS ci ratio: 7.279229e-01	ci left: 4.807705e-06	ci right 1.045678e-05	k: 28	n:3870000
KLK2   3870000 perm   7319 sec   (529 perm/sec)   p_kst 7.235142e-06   p_cons 2.367439e-01   p_joint 5.426357e-06

Joint ci ratio: 8.357443e-01	ci left: 3.350346e-06	ci right 8.273372e-06	k: 21	n:3880000
Cons ci ratio: 3.573361e-03	ci left: 2.363116e-01	ci right 2.371578e-01	k: 918530	n:3880000
KS ci ratio: 7.279229e-01	ci left: 4.795314e-06	ci right 1.042983e-05	k: 28	n:3880000
KLK2   3880000 perm   7355 sec   (528 perm/sec)   p_kst 7.216495e-06   p_cons 2.367345e-01   p_joint 5.412371e-06

Joint ci ratio: 8.357443e-01	ci left: 3.341733e-06	ci right 8.252104e-06	k: 21	n:3890000
Cons ci ratio: 3.568816e-03	ci left: 2.363070e-01	ci right 2.371520e-01	k: 920877	n:3890000
KS ci ratio: 7.279229e-01	ci left: 4.782986e-06	ci right 1.040302e-05	k: 28	n:3890000
KLK2   3890000 perm   7391 sec   (526 perm/sec)   p_kst 7.197943e-06   p_cons 2.367293e-01   p_joint 5.398458e-06

Joint ci ratio: 8.357443e-01	ci left: 3.333165e-06	ci right 8.230945e-06	k: 21	n:3900000
Cons ci ratio: 3.564161e-03	ci left: 2.363154e-01	ci right 2.371594e-01	k: 923275	n:3900000
KS ci ratio: 7.279229e-01	ci left: 4.770722e-06	ci right 1.037634e-05	k: 28	n:3900000
KLK2   3900000 perm   7427 sec   (525 perm/sec)   p_kst 7.179487e-06   p_cons 2.367372e-01   p_joint 5.384615e-06

Joint ci ratio: 8.357444e-01	ci left: 3.324640e-06	ci right 8.209894e-06	k: 21	n:3910000
Cons ci ratio: 3.559621e-03	ci left: 2.363138e-01	ci right 2.371567e-01	k: 925634	n:3910000
KS ci ratio: 7.279229e-01	ci left: 4.758521e-06	ci right 1.034980e-05	k: 28	n:3910000
KLK2   3910000 perm   7462 sec   (524 perm/sec)   p_kst 7.161125e-06   p_cons 2.367350e-01   p_joint 5.370844e-06

Joint ci ratio: 8.357444e-01	ci left: 3.316159e-06	ci right 8.188950e-06	k: 21	n:3920000
Cons ci ratio: 3.555199e-03	ci left: 2.363020e-01	ci right 2.371438e-01	k: 927953	n:3920000
KS ci ratio: 7.279229e-01	ci left: 4.746382e-06	ci right 1.032340e-05	k: 28	n:3920000
KLK2   3920000 perm   7498 sec   (523 perm/sec)   p_kst 7.142857e-06   p_cons 2.367227e-01   p_joint 5.357143e-06

Joint ci ratio: 8.357444e-01	ci left: 3.307721e-06	ci right 8.168113e-06	k: 21	n:3930000
Cons ci ratio: 3.550709e-03	ci left: 2.362989e-01	ci right 2.371397e-01	k: 930306	n:3930000
KS ci ratio: 7.279229e-01	ci left: 4.734304e-06	ci right 1.029713e-05	k: 28	n:3930000
KLK2   3930000 perm   7535 sec   (522 perm/sec)   p_kst 7.124682e-06   p_cons 2.367191e-01   p_joint 5.343511e-06

Joint ci ratio: 8.357444e-01	ci left: 3.299326e-06	ci right 8.147382e-06	k: 21	n:3940000
Cons ci ratio: 3.546098e-03	ci left: 2.363098e-01	ci right 2.371495e-01	k: 932714	n:3940000
KS ci ratio: 7.279230e-01	ci left: 4.722288e-06	ci right 1.027100e-05	k: 28	n:3940000
KLK2   3940000 perm   7572 sec   (520 perm/sec)   p_kst 7.106599e-06   p_cons 2.367294e-01   p_joint 5.329949e-06

Joint ci ratio: 8.357444e-01	ci left: 3.290973e-06	ci right 8.126756e-06	k: 21	n:3950000
Cons ci ratio: 3.541453e-03	ci left: 2.363259e-01	ci right 2.371646e-01	k: 935143	n:3950000
KS ci ratio: 7.279230e-01	ci left: 4.710333e-06	ci right 1.024500e-05	k: 28	n:3950000
KLK2   3950000 perm   7608 sec   (519 perm/sec)   p_kst 7.088608e-06   p_cons 2.367451e-01   p_joint 5.316456e-06

Joint ci ratio: 8.357444e-01	ci left: 3.282662e-06	ci right 8.106234e-06	k: 21	n:3960000
Cons ci ratio: 3.536988e-03	ci left: 2.363256e-01	ci right 2.371632e-01	k: 937507	n:3960000
KS ci ratio: 7.279230e-01	ci left: 4.698438e-06	ci right 1.021912e-05	k: 28	n:3960000
KLK2   3960000 perm   7645 sec   (518 perm/sec)   p_kst 7.070707e-06   p_cons 2.367442e-01   p_joint 5.303030e-06

Joint ci ratio: 8.357444e-01	ci left: 3.274394e-06	ci right 8.085815e-06	k: 21	n:3970000
Cons ci ratio: 3.532452e-03	ci left: 2.363341e-01	ci right 2.371706e-01	k: 939906	n:3970000
KS ci ratio: 7.279230e-01	ci left: 4.686604e-06	ci right 1.019338e-05	k: 28	n:3970000
KLK2   3970000 perm   7681 sec   (517 perm/sec)   p_kst 7.052897e-06   p_cons 2.367521e-01   p_joint 5.289673e-06

Joint ci ratio: 8.357444e-01	ci left: 3.266166e-06	ci right 8.065499e-06	k: 21	n:3980000
Cons ci ratio: 3.528180e-03	ci left: 2.363174e-01	ci right 2.371529e-01	k: 942205	n:3980000
KS ci ratio: 7.279230e-01	ci left: 4.674828e-06	ci right 1.016777e-05	k: 28	n:3980000
KLK2   3980000 perm   7723 sec   (515 perm/sec)   p_kst 7.035176e-06   p_cons 2.367349e-01   p_joint 5.276382e-06

Joint ci ratio: 8.357444e-01	ci left: 3.257981e-06	ci right 8.045285e-06	k: 21	n:3990000
Cons ci ratio: 3.523759e-03	ci left: 2.363176e-01	ci right 2.371520e-01	k: 944571	n:3990000
KS ci ratio: 7.279230e-01	ci left: 4.663112e-06	ci right 1.014229e-05	k: 28	n:3990000
KLK2   3990000 perm   7760 sec   (514 perm/sec)   p_kst 7.017544e-06   p_cons 2.367346e-01   p_joint 5.263158e-06

Joint ci ratio: 8.357444e-01	ci left: 3.249836e-06	ci right 8.025172e-06	k: 21	n:4000000
Cons ci ratio: 3.519440e-03	ci left: 2.363090e-01	ci right 2.371424e-01	k: 946902	n:4000000
KS ci ratio: 7.279230e-01	ci left: 4.651454e-06	ci right 1.011693e-05	k: 28	n:4000000
KLK2   4000000 perm   7796 sec   (513 perm/sec)   p_kst 7.000000e-06   p_cons 2.367255e-01   p_joint 5.250000e-06

Joint ci ratio: 8.357444e-01	ci left: 3.241731e-06	ci right 8.005159e-06	k: 21	n:4010000
Cons ci ratio: 3.515108e-03	ci left: 2.363035e-01	ci right 2.371358e-01	k: 949245	n:4010000
KS ci ratio: 7.279230e-01	ci left: 4.639854e-06	ci right 1.009170e-05	k: 28	n:4010000
KLK2   4010000 perm   7833 sec   (512 perm/sec)   p_kst 6.982544e-06   p_cons 2.367195e-01   p_joint 5.236908e-06

Joint ci ratio: 8.357444e-01	ci left: 3.233667e-06	ci right 7.985245e-06	k: 21	n:4020000
Cons ci ratio: 3.510710e-03	ci left: 2.363064e-01	ci right 2.371377e-01	k: 951622	n:4020000
KS ci ratio: 7.279230e-01	ci left: 4.628312e-06	ci right 1.006660e-05	k: 28	n:4020000
KLK2   4020000 perm   7869 sec   (511 perm/sec)   p_kst 6.965174e-06   p_cons 2.367219e-01   p_joint 5.223881e-06

Joint ci ratio: 8.357444e-01	ci left: 3.225643e-06	ci right 7.965431e-06	k: 21	n:4030000
Cons ci ratio: 3.506376e-03	ci left: 2.363044e-01	ci right 2.371347e-01	k: 953979	n:4030000
KS ci ratio: 7.279230e-01	ci left: 4.616828e-06	ci right 1.004162e-05	k: 28	n:4030000
KLK2   4030000 perm   7906 sec   (510 perm/sec)   p_kst 6.947891e-06   p_cons 2.367194e-01   p_joint 5.210918e-06

Joint ci ratio: 8.357444e-01	ci left: 3.217659e-06	ci right 7.945715e-06	k: 21	n:4040000
Cons ci ratio: 3.501984e-03	ci left: 2.363101e-01	ci right 2.371393e-01	k: 956367	n:4040000
KS ci ratio: 7.279230e-01	ci left: 4.605400e-06	ci right 1.001677e-05	k: 28	n:4040000
KLK2   4040000 perm   7944 sec   (509 perm/sec)   p_kst 6.930693e-06   p_cons 2.367245e-01   p_joint 5.198020e-06

Joint ci ratio: 8.357444e-01	ci left: 3.209714e-06	ci right 7.926095e-06	k: 21	n:4050000
Cons ci ratio: 3.497639e-03	ci left: 2.363125e-01	ci right 2.371407e-01	k: 958742	n:4050000
KS ci ratio: 7.279230e-01	ci left: 4.594029e-06	ci right 9.992033e-06	k: 28	n:4050000
KLK2   4050000 perm   7982 sec   (507 perm/sec)   p_kst 6.913580e-06   p_cons 2.367264e-01   p_joint 5.185185e-06

Joint ci ratio: 8.357444e-01	ci left: 3.201808e-06	ci right 7.906573e-06	k: 21	n:4060000
Cons ci ratio: 3.493401e-03	ci left: 2.363056e-01	ci right 2.371327e-01	k: 961079	n:4060000
KS ci ratio: 7.279230e-01	ci left: 4.582713e-06	ci right 9.967422e-06	k: 28	n:4060000
KLK2   4060000 perm   8020 sec   (506 perm/sec)   p_kst 6.896552e-06   p_cons 2.367190e-01   p_joint 5.172414e-06

Joint ci ratio: 8.357444e-01	ci left: 3.193942e-06	ci right 7.887147e-06	k: 21	n:4070000
Cons ci ratio: 3.488981e-03	ci left: 2.363190e-01	ci right 2.371452e-01	k: 963499	n:4070000
KS ci ratio: 7.279230e-01	ci left: 4.571454e-06	ci right 9.942932e-06	k: 28	n:4070000
KLK2   4070000 perm   8057 sec   (505 perm/sec)   p_kst 6.879607e-06   p_cons 2.367319e-01   p_joint 5.159705e-06

Joint ci ratio: 8.357445e-01	ci left: 3.186113e-06	ci right 7.867815e-06	k: 21	n:4080000
Cons ci ratio: 3.484796e-03	ci left: 2.363099e-01	ci right 2.371351e-01	k: 965827	n:4080000
KS ci ratio: 7.279230e-01	ci left: 4.560249e-06	ci right 9.918562e-06	k: 28	n:4080000
KLK2   4080000 perm   8094 sec   (504 perm/sec)   p_kst 6.862745e-06   p_cons 2.367223e-01   p_joint 5.147059e-06

Joint ci ratio: 8.357445e-01	ci left: 3.178323e-06	ci right 7.848579e-06	k: 21	n:4090000
Cons ci ratio: 3.480564e-03	ci left: 2.363072e-01	ci right 2.371313e-01	k: 968181	n:4090000
KS ci ratio: 7.279231e-01	ci left: 4.549099e-06	ci right 9.894312e-06	k: 28	n:4090000
KLK2   4090000 perm   8132 sec   (503 perm/sec)   p_kst 6.845966e-06   p_cons 2.367191e-01   p_joint 5.134474e-06

Joint ci ratio: 8.357445e-01	ci left: 3.170571e-06	ci right 7.829436e-06	k: 21	n:4100000
Cons ci ratio: 3.476447e-03	ci left: 2.362942e-01	ci right 2.371174e-01	k: 970493	n:4100000
KS ci ratio: 7.279231e-01	ci left: 4.538004e-06	ci right 9.870179e-06	k: 28	n:4100000
KLK2   4100000 perm   8170 sec   (502 perm/sec)   p_kst 6.829268e-06   p_cons 2.367056e-01   p_joint 5.121951e-06

Joint ci ratio: 8.357445e-01	ci left: 3.162857e-06	ci right 7.810386e-06	k: 21	n:4110000
Cons ci ratio: 3.472461e-03	ci left: 2.362692e-01	ci right 2.370913e-01	k: 972755	n:4110000
KS ci ratio: 7.279231e-01	ci left: 4.526962e-06	ci right 9.846164e-06	k: 28	n:4110000
KLK2   4110000 perm   8210 sec   (501 perm/sec)   p_kst 6.812652e-06   p_cons 2.366800e-01   p_joint 5.109489e-06

Joint ci ratio: 8.357445e-01	ci left: 3.155180e-06	ci right 7.791429e-06	k: 21	n:4120000
Cons ci ratio: 3.468038e-03	ci left: 2.362911e-01	ci right 2.371122e-01	k: 975210	n:4120000
KS ci ratio: 7.279231e-01	ci left: 4.515975e-06	ci right 9.822266e-06	k: 28	n:4120000
KLK2   4120000 perm   8250 sec   (499 perm/sec)   p_kst 6.796117e-06   p_cons 2.367015e-01   p_joint 5.097087e-06

Joint ci ratio: 8.357445e-01	ci left: 3.147540e-06	ci right 7.772564e-06	k: 21	n:4130000
Cons ci ratio: 3.463758e-03	ci left: 2.362998e-01	ci right 2.371199e-01	k: 977611	n:4130000
KS ci ratio: 7.279231e-01	ci left: 4.505040e-06	ci right 9.798483e-06	k: 28	n:4130000
KLK2   4130000 perm   8287 sec   (498 perm/sec)   p_kst 6.779661e-06   p_cons 2.367097e-01   p_joint 5.084746e-06

Joint ci ratio: 8.357445e-01	ci left: 3.139938e-06	ci right 7.753789e-06	k: 21	n:4140000
Cons ci ratio: 3.459693e-03	ci left: 2.362877e-01	ci right 2.371068e-01	k: 979926	n:4140000
KS ci ratio: 7.279231e-01	ci left: 4.494158e-06	ci right 9.774815e-06	k: 28	n:4140000
KLK2   4140000 perm   8326 sec   (497 perm/sec)   p_kst 6.763285e-06   p_cons 2.366971e-01   p_joint 5.072464e-06

Joint ci ratio: 8.357445e-01	ci left: 3.132372e-06	ci right 7.735105e-06	k: 21	n:4150000
Cons ci ratio: 3.455568e-03	ci left: 2.362834e-01	ci right 2.371015e-01	k: 982273	n:4150000
KS ci ratio: 7.279231e-01	ci left: 4.483329e-06	ci right 9.751261e-06	k: 28	n:4150000
KLK2   4150000 perm   8366 sec   (496 perm/sec)   p_kst 6.746988e-06   p_cons 2.366923e-01   p_joint 5.060241e-06

Joint ci ratio: 8.357445e-01	ci left: 3.124842e-06	ci right 7.716512e-06	k: 21	n:4160000
Cons ci ratio: 3.451281e-03	ci left: 2.362976e-01	ci right 2.371148e-01	k: 984697	n:4160000
KS ci ratio: 7.279231e-01	ci left: 4.472552e-06	ci right 9.727821e-06	k: 28	n:4160000
KLK2   4160000 perm   8405 sec   (495 perm/sec)   p_kst 6.730769e-06   p_cons 2.367060e-01   p_joint 5.048077e-06

Joint ci ratio: 8.357445e-01	ci left: 3.117348e-06	ci right 7.698007e-06	k: 21	n:4170000
Cons ci ratio: 3.447198e-03	ci left: 2.362921e-01	ci right 2.371083e-01	k: 987039	n:4170000
KS ci ratio: 7.279231e-01	ci left: 4.461826e-06	ci right 9.704493e-06	k: 28	n:4170000
KLK2   4170000 perm   8443 sec   (494 perm/sec)   p_kst 6.714628e-06   p_cons 2.367000e-01   p_joint 5.035971e-06

Joint ci ratio: 8.357445e-01	ci left: 3.109890e-06	ci right 7.679590e-06	k: 21	n:4180000
Cons ci ratio: 3.443049e-03	ci left: 2.362950e-01	ci right 2.371102e-01	k: 989416	n:4180000
KS ci ratio: 7.279231e-01	ci left: 4.451152e-06	ci right 9.681276e-06	k: 28	n:4180000
KLK2   4180000 perm   8482 sec   (493 perm/sec)   p_kst 6.698565e-06   p_cons 2.367024e-01   p_joint 5.023923e-06

Joint ci ratio: 8.357445e-01	ci left: 3.102468e-06	ci right 7.661262e-06	k: 21	n:4190000
Cons ci ratio: 3.439029e-03	ci left: 2.362859e-01	ci right 2.371001e-01	k: 991743	n:4190000
KS ci ratio: 7.279231e-01	ci left: 4.440529e-06	ci right 9.658171e-06	k: 28	n:4190000
KLK2   4190000 perm   8524 sec   (492 perm/sec)   p_kst 6.682578e-06   p_cons 2.366928e-01   p_joint 5.011933e-06

Joint ci ratio: 8.357445e-01	ci left: 3.095081e-06	ci right 7.643021e-06	k: 21	n:4200000
Cons ci ratio: 3.434932e-03	ci left: 2.362864e-01	ci right 2.370997e-01	k: 994110	n:4200000
KS ci ratio: 7.279231e-01	ci left: 4.429956e-06	ci right 9.635175e-06	k: 28	n:4200000
KLK2   4200000 perm   8563 sec   (490 perm/sec)   p_kst 6.666667e-06   p_cons 2.366929e-01   p_joint 5.000000e-06

Joint ci ratio: 8.357445e-01	ci left: 3.087730e-06	ci right 7.624867e-06	k: 21	n:4210000
Cons ci ratio: 3.430717e-03	ci left: 2.363009e-01	ci right 2.371132e-01	k: 996536	n:4210000
KS ci ratio: 7.279231e-01	ci left: 4.419434e-06	ci right 9.612289e-06	k: 28	n:4210000
KLK2   4210000 perm   8603 sec   (489 perm/sec)   p_kst 6.650831e-06   p_cons 2.367069e-01   p_joint 4.988124e-06

Joint ci ratio: 8.357445e-01	ci left: 3.080413e-06	ci right 7.606798e-06	k: 21	n:4220000
Cons ci ratio: 3.426803e-03	ci left: 2.362853e-01	ci right 2.370966e-01	k: 998835	n:4220000
KS ci ratio: 7.279231e-01	ci left: 4.408961e-06	ci right 9.589511e-06	k: 28	n:4220000
KLK2   4220000 perm   8643 sec   (488 perm/sec)   p_kst 6.635071e-06   p_cons 2.366908e-01   p_joint 4.976303e-06

Joint ci ratio: 8.357445e-01	ci left: 3.073130e-06	ci right 7.588815e-06	k: 21	n:4230000
Cons ci ratio: 3.422781e-03	ci left: 2.362825e-01	ci right 2.370928e-01	k: 1001188	n:4230000
KS ci ratio: 7.279231e-01	ci left: 4.398538e-06	ci right 9.566841e-06	k: 28	n:4230000
KLK2   4230000 perm   8682 sec   (487 perm/sec)   p_kst 6.619385e-06   p_cons 2.366875e-01   p_joint 4.964539e-06

Joint ci ratio: 8.357445e-01	ci left: 3.065882e-06	ci right 7.570917e-06	k: 21	n:4240000
Cons ci ratio: 3.418742e-03	ci left: 2.362830e-01	ci right 2.370924e-01	k: 1003555	n:4240000
KS ci ratio: 7.279232e-01	ci left: 4.388164e-06	ci right 9.544277e-06	k: 28	n:4240000
KLK2   4240000 perm   8722 sec   (486 perm/sec)   p_kst 6.603774e-06   p_cons 2.366875e-01   p_joint 4.952830e-06

Joint ci ratio: 8.357445e-01	ci left: 3.058669e-06	ci right 7.553103e-06	k: 21	n:4250000
Cons ci ratio: 3.414818e-03	ci left: 2.362729e-01	ci right 2.370813e-01	k: 1005877	n:4250000
KS ci ratio: 7.279232e-01	ci left: 4.377839e-06	ci right 9.521820e-06	k: 28	n:4250000
KLK2   4250000 perm   8764 sec   (485 perm/sec)   p_kst 6.588235e-06   p_cons 2.366769e-01   p_joint 4.941176e-06

Joint ci ratio: 8.357446e-01	ci left: 3.051489e-06	ci right 7.535373e-06	k: 21	n:4260000
Cons ci ratio: 3.410875e-03	ci left: 2.362662e-01	ci right 2.370736e-01	k: 1008213	n:4260000
KS ci ratio: 7.279232e-01	ci left: 4.367562e-06	ci right 9.499469e-06	k: 28	n:4260000
KLK2   4260000 perm   8803 sec   (484 perm/sec)   p_kst 6.572770e-06   p_cons 2.366697e-01   p_joint 4.929577e-06

Joint ci ratio: 8.173742e-01	ci left: 3.228875e-06	ci right 7.800520e-06	k: 22	n:4270000
Cons ci ratio: 3.406969e-03	ci left: 2.362571e-01	ci right 2.370636e-01	k: 1010539	n:4270000
KS ci ratio: 7.156882e-01	ci left: 4.548425e-06	ci right 9.753812e-06	k: 29	n:4270000
KLK2   4270000 perm   8843 sec   (483 perm/sec)   p_kst 6.791569e-06   p_cons 2.366602e-01   p_joint 5.152225e-06

Joint ci ratio: 8.001643e-01	ci left: 3.406551e-06	ci right 8.063375e-06	k: 23	n:4280000
Cons ci ratio: 3.403008e-03	ci left: 2.362553e-01	ci right 2.370609e-01	k: 1012896	n:4280000
KS ci ratio: 7.040502e-01	ci left: 4.729181e-06	ci right 1.000626e-05	k: 30	n:4280000
KLK2   4280000 perm   8883 sec   (482 perm/sec)   p_kst 7.009346e-06   p_cons 2.366579e-01   p_joint 5.373832e-06

Joint ci ratio: 8.001643e-01	ci left: 3.398611e-06	ci right 8.044580e-06	k: 23	n:4290000
Cons ci ratio: 3.399008e-03	ci left: 2.362592e-01	ci right 2.370638e-01	k: 1015277	n:4290000
KS ci ratio: 7.040502e-01	ci left: 4.718157e-06	ci right 9.982937e-06	k: 30	n:4290000
KLK2   4290000 perm   8922 sec   (481 perm/sec)   p_kst 6.993007e-06   p_cons 2.366613e-01   p_joint 5.361305e-06

Joint ci ratio: 8.001643e-01	ci left: 3.390707e-06	ci right 8.025871e-06	k: 23	n:4300000
Cons ci ratio: 3.395205e-03	ci left: 2.362435e-01	ci right 2.370471e-01	k: 1017574	n:4300000
KS ci ratio: 7.040502e-01	ci left: 4.707185e-06	ci right 9.959721e-06	k: 30	n:4300000
KLK2   4300000 perm   8962 sec   (480 perm/sec)   p_kst 6.976744e-06   p_cons 2.366451e-01   p_joint 5.348837e-06

Joint ci ratio: 7.839976e-01	ci left: 3.567811e-06	ci right 8.285394e-06	k: 24	n:4310000
Cons ci ratio: 3.391385e-03	ci left: 2.362311e-01	ci right 2.370338e-01	k: 1019885	n:4310000
KS ci ratio: 6.929620e-01	ci left: 4.887011e-06	ci right 1.020927e-05	k: 31	n:4310000
KLK2   4310000 perm   9002 sec   (479 perm/sec)   p_kst 7.192575e-06   p_cons 2.366323e-01   p_joint 5.568445e-06

Joint ci ratio: 7.839976e-01	ci left: 3.559552e-06	ci right 8.266215e-06	k: 24	n:4320000
Cons ci ratio: 3.387265e-03	ci left: 2.362520e-01	ci right 2.370539e-01	k: 1022340	n:4320000
KS ci ratio: 6.929620e-01	ci left: 4.875699e-06	ci right 1.018564e-05	k: 31	n:4320000
KLK2   4320000 perm   9041 sec   (478 perm/sec)   p_kst 7.175926e-06   p_cons 2.366528e-01   p_joint 5.555556e-06

Joint ci ratio: 7.839976e-01	ci left: 3.551332e-06	ci right 8.247125e-06	k: 24	n:4330000
Cons ci ratio: 3.383236e-03	ci left: 2.362648e-01	ci right 2.370658e-01	k: 1024760	n:4330000
KS ci ratio: 6.929620e-01	ci left: 4.864438e-06	ci right 1.016212e-05	k: 31	n:4330000
KLK2   4330000 perm   9081 sec   (477 perm/sec)   p_kst 7.159353e-06   p_cons 2.366651e-01   p_joint 5.542725e-06

Joint ci ratio: 7.839977e-01	ci left: 3.543149e-06	ci right 8.228122e-06	k: 24	n:4340000
Cons ci ratio: 3.379367e-03	ci left: 2.362619e-01	ci right 2.370619e-01	k: 1027112	n:4340000
KS ci ratio: 6.929620e-01	ci left: 4.853230e-06	ci right 1.013870e-05	k: 31	n:4340000
KLK2   4340000 perm   9122 sec   (476 perm/sec)   p_kst 7.142857e-06   p_cons 2.366618e-01   p_joint 5.529954e-06

Joint ci ratio: 7.687729e-01	ci left: 3.719241e-06	ci right 8.483881e-06	k: 25	n:4350000
Cons ci ratio: 3.375437e-03	ci left: 2.362671e-01	ci right 2.370661e-01	k: 1029499	n:4350000
KS ci ratio: 6.823817e-01	ci left: 5.031724e-06	ci right 1.038492e-05	k: 32	n:4350000
KLK2   4350000 perm   9163 sec   (475 perm/sec)   p_kst 7.356322e-06   p_cons 2.366664e-01   p_joint 5.747126e-06

Joint ci ratio: 7.687729e-01	ci left: 3.710710e-06	ci right 8.464422e-06	k: 25	n:4360000
Cons ci ratio: 3.371574e-03	ci left: 2.362665e-01	ci right 2.370646e-01	k: 1031861	n:4360000
KS ci ratio: 6.823818e-01	ci left: 5.020183e-06	ci right 1.036110e-05	k: 32	n:4360000
KLK2   4360000 perm   9204 sec   (474 perm/sec)   p_kst 7.339450e-06   p_cons 2.366654e-01   p_joint 5.733945e-06

Joint ci ratio: 7.687729e-01	ci left: 3.702219e-06	ci right 8.445053e-06	k: 25	n:4370000
Cons ci ratio: 3.367609e-03	ci left: 2.362782e-01	ci right 2.370755e-01	k: 1034277	n:4370000
KS ci ratio: 6.823818e-01	ci left: 5.008695e-06	ci right 1.033739e-05	k: 32	n:4370000
KLK2   4370000 perm   9245 sec   (473 perm/sec)   p_kst 7.322654e-06   p_cons 2.366767e-01   p_joint 5.720824e-06

Joint ci ratio: 7.687729e-01	ci left: 3.693766e-06	ci right 8.425772e-06	k: 25	n:4380000
Cons ci ratio: 3.363723e-03	ci left: 2.362828e-01	ci right 2.370792e-01	k: 1036662	n:4380000
KS ci ratio: 6.823818e-01	ci left: 4.997260e-06	ci right 1.031379e-05	k: 32	n:4380000
KLK2   4380000 perm   9286 sec   (472 perm/sec)   p_kst 7.305936e-06   p_cons 2.366808e-01   p_joint 5.707763e-06

Joint ci ratio: 7.687729e-01	ci left: 3.685352e-06	ci right 8.406579e-06	k: 25	n:4390000
Cons ci ratio: 3.360000e-03	ci left: 2.362715e-01	ci right 2.370669e-01	k: 1038977	n:4390000
KS ci ratio: 6.823818e-01	ci left: 4.985877e-06	ci right 1.029029e-05	k: 32	n:4390000
KLK2   4390000 perm   9327 sec   (471 perm/sec)   p_kst 7.289294e-06   p_cons 2.366690e-01   p_joint 5.694761e-06

Joint ci ratio: 7.687729e-01	ci left: 3.676976e-06	ci right 8.387473e-06	k: 25	n:4400000
Cons ci ratio: 3.356369e-03	ci left: 2.362516e-01	ci right 2.370461e-01	k: 1041254	n:4400000
KS ci ratio: 6.823818e-01	ci left: 4.974545e-06	ci right 1.026691e-05	k: 32	n:4400000
KLK2   4400000 perm   9367 sec   (470 perm/sec)   p_kst 7.272727e-06   p_cons 2.366486e-01   p_joint 5.681818e-06

Joint ci ratio: 7.687729e-01	ci left: 3.668639e-06	ci right 8.368454e-06	k: 25	n:4410000
Cons ci ratio: 3.352533e-03	ci left: 2.362551e-01	ci right 2.370487e-01	k: 1043634	n:4410000
KS ci ratio: 6.823818e-01	ci left: 4.963265e-06	ci right 1.024362e-05	k: 32	n:4410000
KLK2   4410000 perm   9409 sec   (469 perm/sec)   p_kst 7.256236e-06   p_cons 2.366517e-01   p_joint 5.668934e-06

Joint ci ratio: 7.687729e-01	ci left: 3.660338e-06	ci right 8.349521e-06	k: 25	n:4420000
Cons ci ratio: 3.348811e-03	ci left: 2.362477e-01	ci right 2.370404e-01	k: 1045966	n:4420000
KS ci ratio: 6.823818e-01	ci left: 4.952036e-06	ci right 1.022045e-05	k: 32	n:4420000
KLK2   4420000 perm   9451 sec   (468 perm/sec)   p_kst 7.239819e-06   p_cons 2.366439e-01   p_joint 5.656109e-06

Joint ci ratio: 7.687729e-01	ci left: 3.652076e-06	ci right 8.330673e-06	k: 25	n:4430000
Cons ci ratio: 3.345040e-03	ci left: 2.362469e-01	ci right 2.370387e-01	k: 1048327	n:4430000
KS ci ratio: 6.823818e-01	ci left: 4.940858e-06	ci right 1.019738e-05	k: 32	n:4430000
KLK2   4430000 perm   9493 sec   (467 perm/sec)   p_kst 7.223476e-06   p_cons 2.366427e-01   p_joint 5.643341e-06

Joint ci ratio: 7.687729e-01	ci left: 3.643850e-06	ci right 8.311910e-06	k: 25	n:4440000
Cons ci ratio: 3.341280e-03	ci left: 2.362464e-01	ci right 2.370373e-01	k: 1050689	n:4440000
KS ci ratio: 6.823818e-01	ci left: 4.929729e-06	ci right 1.017441e-05	k: 32	n:4440000
KLK2   4440000 perm   9534 sec   (466 perm/sec)   p_kst 7.207207e-06   p_cons 2.366417e-01   p_joint 5.630631e-06

Joint ci ratio: 7.687729e-01	ci left: 3.635662e-06	ci right 8.293232e-06	k: 25	n:4450000
Cons ci ratio: 3.337535e-03	ci left: 2.362456e-01	ci right 2.370356e-01	k: 1053050	n:4450000
KS ci ratio: 6.823818e-01	ci left: 4.918651e-06	ci right 1.015155e-05	k: 32	n:4450000
KLK2   4450000 perm   9578 sec   (465 perm/sec)   p_kst 7.191011e-06   p_cons 2.366404e-01   p_joint 5.617978e-06

Joint ci ratio: 7.544020e-01	ci left: 3.808089e-06	ci right 8.541698e-06	k: 26	n:4460000
Cons ci ratio: 3.333720e-03	ci left: 2.362538e-01	ci right 2.370429e-01	k: 1055451	n:4460000
KS ci ratio: 6.722718e-01	ci left: 5.093207e-06	ci right 1.039108e-05	k: 33	n:4460000
KLK2   4460000 perm   9622 sec   (464 perm/sec)   p_kst 7.399103e-06   p_cons 2.366482e-01   p_joint 5.829596e-06

Joint ci ratio: 7.544020e-01	ci left: 3.799570e-06	ci right 8.522589e-06	k: 26	n:4470000
Cons ci ratio: 3.329922e-03	ci left: 2.362615e-01	ci right 2.370498e-01	k: 1057850	n:4470000
KS ci ratio: 6.722718e-01	ci left: 5.081813e-06	ci right 1.036783e-05	k: 33	n:4470000
KLK2   4470000 perm   9667 sec   (462 perm/sec)   p_kst 7.382550e-06   p_cons 2.366555e-01   p_joint 5.816555e-06

Joint ci ratio: 7.544020e-01	ci left: 3.791089e-06	ci right 8.503565e-06	k: 26	n:4480000
Cons ci ratio: 3.326141e-03	ci left: 2.362688e-01	ci right 2.370561e-01	k: 1060247	n:4480000
KS ci ratio: 6.722718e-01	ci left: 5.070470e-06	ci right 1.034469e-05	k: 33	n:4480000
KLK2   4480000 perm   9709 sec   (461 perm/sec)   p_kst 7.366071e-06   p_cons 2.366623e-01   p_joint 5.803571e-06

Joint ci ratio: 7.544020e-01	ci left: 3.782646e-06	ci right 8.484626e-06	k: 26	n:4490000
Cons ci ratio: 3.322368e-03	ci left: 2.362764e-01	ci right 2.370629e-01	k: 1062646	n:4490000
KS ci ratio: 6.722718e-01	ci left: 5.059177e-06	ci right 1.032165e-05	k: 33	n:4490000
KLK2   4490000 perm   9751 sec   (460 perm/sec)   p_kst 7.349666e-06   p_cons 2.366695e-01   p_joint 5.790646e-06

Joint ci ratio: 7.544020e-01	ci left: 3.774240e-06	ci right 8.465772e-06	k: 26	n:4500000
Cons ci ratio: 3.318693e-03	ci left: 2.362749e-01	ci right 2.370605e-01	k: 1065004	n:4500000
KS ci ratio: 6.722718e-01	ci left: 5.047934e-06	ci right 1.029871e-05	k: 33	n:4500000
KLK2   4500000 perm   9795 sec   (459 perm/sec)   p_kst 7.333333e-06   p_cons 2.366676e-01   p_joint 5.777778e-06

Joint ci ratio: 7.544020e-01	ci left: 3.765871e-06	ci right 8.447001e-06	k: 26	n:4510000
Cons ci ratio: 3.315116e-03	ci left: 2.362639e-01	ci right 2.370486e-01	k: 1067319	n:4510000
KS ci ratio: 6.722718e-01	ci left: 5.036742e-06	ci right 1.027588e-05	k: 33	n:4510000
KLK2   4510000 perm   9839 sec   (458 perm/sec)   p_kst 7.317073e-06   p_cons 2.366561e-01   p_joint 5.764967e-06

Joint ci ratio: 7.544020e-01	ci left: 3.757539e-06	ci right 8.428313e-06	k: 26	n:4520000
Cons ci ratio: 3.311485e-03	ci left: 2.362602e-01	ci right 2.370441e-01	k: 1069667	n:4520000
KS ci ratio: 6.722719e-01	ci left: 5.025598e-06	ci right 1.025314e-05	k: 33	n:4520000
KLK2   4520000 perm   9890 sec   (457 perm/sec)   p_kst 7.300885e-06   p_cons 2.366520e-01   p_joint 5.752212e-06

Joint ci ratio: 7.544020e-01	ci left: 3.749245e-06	ci right 8.409707e-06	k: 26	n:4530000
Cons ci ratio: 3.307999e-03	ci left: 2.362420e-01	ci right 2.370250e-01	k: 1071949	n:4530000
KS ci ratio: 6.722719e-01	ci left: 5.014504e-06	ci right 1.023051e-05	k: 33	n:4530000
KLK2   4530000 perm   9938 sec   (456 perm/sec)   p_kst 7.284768e-06   p_cons 2.366333e-01   p_joint 5.739514e-06

Joint ci ratio: 7.544020e-01	ci left: 3.740986e-06	ci right 8.391184e-06	k: 26	n:4540000
Cons ci ratio: 3.304292e-03	ci left: 2.362492e-01	ci right 2.370313e-01	k: 1074346	n:4540000
KS ci ratio: 6.722719e-01	ci left: 5.003459e-06	ci right 1.020797e-05	k: 33	n:4540000
KLK2   4540000 perm   9984 sec   (455 perm/sec)   p_kst 7.268722e-06   p_cons 2.366401e-01   p_joint 5.726872e-06

Joint ci ratio: 7.544020e-01	ci left: 3.732764e-06	ci right 8.372741e-06	k: 26	n:4550000
Cons ci ratio: 3.300623e-03	ci left: 2.362535e-01	ci right 2.370348e-01	k: 1076730	n:4550000
KS ci ratio: 6.722719e-01	ci left: 4.992463e-06	ci right 1.018554e-05	k: 33	n:4550000
KLK2   4550000 perm   10031 sec   (454 perm/sec)   p_kst 7.252747e-06   p_cons 2.366440e-01   p_joint 5.714286e-06

Joint ci ratio: 7.544020e-01	ci left: 3.724579e-06	ci right 8.354380e-06	k: 26	n:4560000
Cons ci ratio: 3.297067e-03	ci left: 2.362468e-01	ci right 2.370272e-01	k: 1079064	n:4560000
KS ci ratio: 6.722719e-01	ci left: 4.981514e-06	ci right 1.016320e-05	k: 33	n:4560000
KLK2   4560000 perm   10078 sec   (452 perm/sec)   p_kst 7.236842e-06   p_cons 2.366368e-01   p_joint 5.701754e-06

Joint ci ratio: 7.544020e-01	ci left: 3.716428e-06	ci right 8.336099e-06	k: 26	n:4570000
Cons ci ratio: 3.293488e-03	ci left: 2.362439e-01	ci right 2.370234e-01	k: 1081415	n:4570000
KS ci ratio: 6.722719e-01	ci left: 4.970614e-06	ci right 1.014096e-05	k: 33	n:4570000
KLK2   4570000 perm   10124 sec   (451 perm/sec)   p_kst 7.221007e-06   p_cons 2.366335e-01   p_joint 5.689278e-06

Joint ci ratio: 7.544020e-01	ci left: 3.708314e-06	ci right 8.317898e-06	k: 26	n:4580000
Cons ci ratio: 3.289916e-03	ci left: 2.362416e-01	ci right 2.370203e-01	k: 1083769	n:4580000
KS ci ratio: 6.722719e-01	ci left: 4.959761e-06	ci right 1.011882e-05	k: 33	n:4580000
KLK2   4580000 perm   10172 sec   (450 perm/sec)   p_kst 7.205240e-06   p_cons 2.366308e-01   p_joint 5.676856e-06

Joint ci ratio: 7.544021e-01	ci left: 3.700235e-06	ci right 8.299776e-06	k: 26	n:4590000
Cons ci ratio: 3.286285e-03	ci left: 2.362470e-01	ci right 2.370248e-01	k: 1086158	n:4590000
KS ci ratio: 6.722719e-01	ci left: 4.948955e-06	ci right 1.009678e-05	k: 33	n:4590000
KLK2   4590000 perm   10220 sec   (449 perm/sec)   p_kst 7.189542e-06   p_cons 2.366357e-01   p_joint 5.664488e-06

Joint ci ratio: 7.544021e-01	ci left: 3.692191e-06	ci right 8.281733e-06	k: 26	n:4600000
Cons ci ratio: 3.282623e-03	ci left: 2.362571e-01	ci right 2.370341e-01	k: 1088569	n:4600000
KS ci ratio: 6.722719e-01	ci left: 4.938197e-06	ci right 1.007483e-05	k: 33	n:4600000
KLK2   4600000 perm   10266 sec   (448 perm/sec)   p_kst 7.173913e-06   p_cons 2.366454e-01   p_joint 5.652174e-06

Joint ci ratio: 7.544021e-01	ci left: 3.684182e-06	ci right 8.263769e-06	k: 26	n:4610000
Cons ci ratio: 3.278957e-03	ci left: 2.362689e-01	ci right 2.370451e-01	k: 1090988	n:4610000
KS ci ratio: 6.722719e-01	ci left: 4.927485e-06	ci right 1.005297e-05	k: 33	n:4610000
KLK2   4610000 perm   10310 sec   (447 perm/sec)   p_kst 7.158351e-06   p_cons 2.366568e-01   p_joint 5.639913e-06

Joint ci ratio: 7.544021e-01	ci left: 3.676207e-06	ci right 8.245882e-06	k: 26	n:4620000
Cons ci ratio: 3.275439e-03	ci left: 2.362657e-01	ci right 2.370411e-01	k: 1093338	n:4620000
KS ci ratio: 6.722719e-01	ci left: 4.916819e-06	ci right 1.003121e-05	k: 33	n:4620000
KLK2   4620000 perm   10357 sec   (446 perm/sec)   p_kst 7.142857e-06   p_cons 2.366532e-01   p_joint 5.627706e-06

Joint ci ratio: 7.544021e-01	ci left: 3.668267e-06	ci right 8.228072e-06	k: 26	n:4630000
Cons ci ratio: 3.271924e-03	ci left: 2.362635e-01	ci right 2.370380e-01	k: 1095692	n:4630000
KS ci ratio: 6.722719e-01	ci left: 4.906200e-06	ci right 1.000955e-05	k: 33	n:4630000
KLK2   4630000 perm   10400 sec   (445 perm/sec)   p_kst 7.127430e-06   p_cons 2.366505e-01   p_joint 5.615551e-06

Joint ci ratio: 7.544021e-01	ci left: 3.660362e-06	ci right 8.210339e-06	k: 26	n:4640000
Cons ci ratio: 3.268524e-03	ci left: 2.362498e-01	ci right 2.370234e-01	k: 1097993	n:4640000
KS ci ratio: 6.722719e-01	ci left: 4.895626e-06	ci right 9.987975e-06	k: 33	n:4640000
KLK2   4640000 perm   10446 sec   (444 perm/sec)   p_kst 7.112069e-06   p_cons 2.366364e-01   p_joint 5.603448e-06

Joint ci ratio: 7.544021e-01	ci left: 3.652490e-06	ci right 8.192683e-06	k: 26	n:4650000
Cons ci ratio: 3.265022e-03	ci left: 2.362486e-01	ci right 2.370214e-01	k: 1100352	n:4650000
KS ci ratio: 6.722719e-01	ci left: 4.885098e-06	ci right 9.966495e-06	k: 33	n:4650000
KLK2   4650000 perm   10492 sec   (443 perm/sec)   p_kst 7.096774e-06   p_cons 2.366348e-01   p_joint 5.591398e-06

Joint ci ratio: 7.544021e-01	ci left: 3.644652e-06	ci right 8.175102e-06	k: 26	n:4660000
Cons ci ratio: 3.261551e-03	ci left: 2.362453e-01	ci right 2.370173e-01	k: 1102701	n:4660000
KS ci ratio: 6.722719e-01	ci left: 4.874615e-06	ci right 9.945108e-06	k: 33	n:4660000
KLK2   4660000 perm   10538 sec   (442 perm/sec)   p_kst 7.081545e-06   p_cons 2.366311e-01   p_joint 5.579399e-06

Joint ci ratio: 7.544021e-01	ci left: 3.636847e-06	ci right 8.157596e-06	k: 26	n:4670000
Cons ci ratio: 3.258046e-03	ci left: 2.362469e-01	ci right 2.370181e-01	k: 1105073	n:4670000
KS ci ratio: 6.722719e-01	ci left: 4.864176e-06	ci right 9.923812e-06	k: 33	n:4670000
KLK2   4670000 perm   10587 sec   (441 perm/sec)   p_kst 7.066381e-06   p_cons 2.366323e-01   p_joint 5.567452e-06

Joint ci ratio: 7.544021e-01	ci left: 3.629076e-06	ci right 8.140166e-06	k: 26	n:4680000
Cons ci ratio: 3.254537e-03	ci left: 2.362503e-01	ci right 2.370206e-01	k: 1107453	n:4680000
KS ci ratio: 6.722719e-01	ci left: 4.853783e-06	ci right 9.902608e-06	k: 33	n:4680000
KLK2   4680000 perm   10635 sec   (440 perm/sec)   p_kst 7.051282e-06   p_cons 2.366353e-01   p_joint 5.555556e-06

Joint ci ratio: 7.544021e-01	ci left: 3.621339e-06	ci right 8.122809e-06	k: 26	n:4690000
Cons ci ratio: 3.250936e-03	ci left: 2.362651e-01	ci right 2.370346e-01	k: 1109887	n:4690000
KS ci ratio: 6.722719e-01	ci left: 4.843434e-06	ci right 9.881493e-06	k: 33	n:4690000
KLK2   4690000 perm   10687 sec   (439 perm/sec)   p_kst 7.036247e-06   p_cons 2.366497e-01   p_joint 5.543710e-06

Joint ci ratio: 7.544021e-01	ci left: 3.613634e-06	ci right 8.105527e-06	k: 26	n:4700000
Cons ci ratio: 3.247514e-03	ci left: 2.362611e-01	ci right 2.370298e-01	k: 1112233	n:4700000
KS ci ratio: 6.722720e-01	ci left: 4.833129e-06	ci right 9.860469e-06	k: 33	n:4700000
KLK2   4700000 perm   10731 sec   (438 perm/sec)   p_kst 7.021277e-06   p_cons 2.366453e-01   p_joint 5.531915e-06

Joint ci ratio: 7.408081e-01	ci left: 3.777746e-06	ci right 8.340452e-06	k: 27	n:4710000
Cons ci ratio: 3.243944e-03	ci left: 2.362750e-01	ci right 2.370429e-01	k: 1114663	n:4710000
KS ci ratio: 6.625984e-01	ci left: 4.999153e-06	ci right 1.008737e-05	k: 34	n:4710000
KLK2   4710000 perm   10783 sec   (437 perm/sec)   p_kst 7.218684e-06   p_cons 2.366588e-01   p_joint 5.732484e-06

Joint ci ratio: 7.408081e-01	ci left: 3.769743e-06	ci right 8.322782e-06	k: 27	n:4720000
Cons ci ratio: 3.240572e-03	ci left: 2.362681e-01	ci right 2.370352e-01	k: 1116995	n:4720000
KS ci ratio: 6.625984e-01	ci left: 4.988562e-06	ci right 1.006600e-05	k: 34	n:4720000
KLK2   4720000 perm   10833 sec   (436 perm/sec)   p_kst 7.203390e-06   p_cons 2.366515e-01   p_joint 5.720339e-06

Joint ci ratio: 7.408081e-01	ci left: 3.761773e-06	ci right 8.305186e-06	k: 27	n:4730000
Cons ci ratio: 3.237028e-03	ci left: 2.362815e-01	ci right 2.370478e-01	k: 1119423	n:4730000
KS ci ratio: 6.625984e-01	ci left: 4.978015e-06	ci right 1.004472e-05	k: 34	n:4730000
KLK2   4730000 perm   10878 sec   (435 perm/sec)   p_kst 7.188161e-06   p_cons 2.366645e-01   p_joint 5.708245e-06

Joint ci ratio: 7.408081e-01	ci left: 3.753837e-06	ci right 8.287665e-06	k: 27	n:4740000
Cons ci ratio: 3.233724e-03	ci left: 2.362693e-01	ci right 2.370348e-01	k: 1121730	n:4740000
KS ci ratio: 6.625984e-01	ci left: 4.967513e-06	ci right 1.002353e-05	k: 34	n:4740000
KLK2   4740000 perm   10924 sec   (434 perm/sec)   p_kst 7.172996e-06   p_cons 2.366519e-01   p_joint 5.696203e-06

Joint ci ratio: 7.408081e-01	ci left: 3.745934e-06	ci right 8.270217e-06	k: 27	n:4750000
Cons ci ratio: 3.230227e-03	ci left: 2.362799e-01	ci right 2.370446e-01	k: 1124145	n:4750000
KS ci ratio: 6.625984e-01	ci left: 4.957055e-06	ci right 1.000243e-05	k: 34	n:4750000
KLK2   4750000 perm   10970 sec   (433 perm/sec)   p_kst 7.157895e-06   p_cons 2.366621e-01   p_joint 5.684211e-06

Joint ci ratio: 7.408081e-01	ci left: 3.738064e-06	ci right 8.252843e-06	k: 27	n:4760000
Cons ci ratio: 3.226726e-03	ci left: 2.362922e-01	ci right 2.370560e-01	k: 1126568	n:4760000
KS ci ratio: 6.625984e-01	ci left: 4.946641e-06	ci right 9.981413e-06	k: 34	n:4760000
KLK2   4760000 perm   11017 sec   (432 perm/sec)   p_kst 7.142857e-06   p_cons 2.366739e-01   p_joint 5.672269e-06

Joint ci ratio: 7.408081e-01	ci left: 3.730228e-06	ci right 8.235541e-06	k: 27	n:4770000
Cons ci ratio: 3.223394e-03	ci left: 2.362868e-01	ci right 2.370498e-01	k: 1128907	n:4770000
KS ci ratio: 6.625984e-01	ci left: 4.936271e-06	ci right 9.960487e-06	k: 34	n:4770000
KLK2   4770000 perm   11062 sec   (431 perm/sec)   p_kst 7.127883e-06   p_cons 2.366681e-01   p_joint 5.660377e-06

Joint ci ratio: 7.408081e-01	ci left: 3.722424e-06	ci right 8.218312e-06	k: 27	n:4780000
Cons ci ratio: 3.219959e-03	ci left: 2.362941e-01	ci right 2.370564e-01	k: 1131307	n:4780000
KS ci ratio: 6.625984e-01	ci left: 4.925944e-06	ci right 9.939650e-06	k: 34	n:4780000
KLK2   4780000 perm   11107 sec   (430 perm/sec)   p_kst 7.112971e-06   p_cons 2.366751e-01   p_joint 5.648536e-06

Joint ci ratio: 7.408081e-01	ci left: 3.714652e-06	ci right 8.201155e-06	k: 27	n:4790000
Cons ci ratio: 3.216461e-03	ci left: 2.363096e-01	ci right 2.370711e-01	k: 1133746	n:4790000
KS ci ratio: 6.625984e-01	ci left: 4.915660e-06	ci right 9.918899e-06	k: 34	n:4790000
KLK2   4790000 perm   11154 sec   (429 perm/sec)   p_kst 7.098121e-06   p_cons 2.366902e-01   p_joint 5.636743e-06

Joint ci ratio: 7.408081e-01	ci left: 3.706914e-06	ci right 8.184069e-06	k: 27	n:4800000
Cons ci ratio: 3.213183e-03	ci left: 2.363017e-01	ci right 2.370624e-01	k: 1136073	n:4800000
KS ci ratio: 6.625985e-01	ci left: 4.905419e-06	ci right 9.898234e-06	k: 34	n:4800000
KLK2   4800000 perm   11199 sec   (429 perm/sec)   p_kst 7.083333e-06   p_cons 2.366819e-01   p_joint 5.625000e-06

Joint ci ratio: 7.408081e-01	ci left: 3.699207e-06	ci right 8.167055e-06	k: 27	n:4810000
Cons ci ratio: 3.209741e-03	ci left: 2.363133e-01	ci right 2.370733e-01	k: 1138494	n:4810000
KS ci ratio: 6.625985e-01	ci left: 4.895221e-06	ci right 9.877656e-06	k: 34	n:4810000
KLK2   4810000 perm   11246 sec   (428 perm/sec)   p_kst 7.068607e-06   p_cons 2.366931e-01   p_joint 5.613306e-06

Joint ci ratio: 7.408081e-01	ci left: 3.691532e-06	ci right 8.150110e-06	k: 27	n:4820000
Cons ci ratio: 3.206377e-03	ci left: 2.363175e-01	ci right 2.370766e-01	k: 1140879	n:4820000
KS ci ratio: 6.625985e-01	ci left: 4.885065e-06	ci right 9.857163e-06	k: 34	n:4820000
KLK2   4820000 perm   11295 sec   (427 perm/sec)   p_kst 7.053942e-06   p_cons 2.366969e-01   p_joint 5.601660e-06

Joint ci ratio: 7.408081e-01	ci left: 3.683889e-06	ci right 8.133237e-06	k: 27	n:4830000
Cons ci ratio: 3.203002e-03	ci left: 2.363239e-01	ci right 2.370822e-01	k: 1143275	n:4830000
KS ci ratio: 6.625985e-01	ci left: 4.874951e-06	ci right 9.836755e-06	k: 34	n:4830000
KLK2   4830000 perm   11340 sec   (426 perm/sec)   p_kst 7.039337e-06   p_cons 2.367029e-01   p_joint 5.590062e-06

Joint ci ratio: 7.408081e-01	ci left: 3.676278e-06	ci right 8.116432e-06	k: 27	n:4840000
Cons ci ratio: 3.199624e-03	ci left: 2.363319e-01	ci right 2.370895e-01	k: 1145679	n:4840000
KS ci ratio: 6.625985e-01	ci left: 4.864878e-06	ci right 9.816431e-06	k: 34	n:4840000
KLK2   4840000 perm   11384 sec   (425 perm/sec)   p_kst 7.024793e-06   p_cons 2.367105e-01   p_joint 5.578512e-06

Joint ci ratio: 7.408082e-01	ci left: 3.668698e-06	ci right 8.099697e-06	k: 27	n:4850000
Cons ci ratio: 3.196147e-03	ci left: 2.363523e-01	ci right 2.371091e-01	k: 1148143	n:4850000
KS ci ratio: 6.625985e-01	ci left: 4.854848e-06	ci right 9.796191e-06	k: 34	n:4850000
KLK2   4850000 perm   11428 sec   (424 perm/sec)   p_kst 7.010309e-06   p_cons 2.367305e-01   p_joint 5.567010e-06

Joint ci ratio: 7.408082e-01	ci left: 3.661149e-06	ci right 8.083031e-06	k: 27	n:4860000
Cons ci ratio: 3.192894e-03	ci left: 2.363485e-01	ci right 2.371045e-01	k: 1150490	n:4860000
KS ci ratio: 6.625985e-01	ci left: 4.844858e-06	ci right 9.776034e-06	k: 34	n:4860000
KLK2   4860000 perm   11473 sec   (424 perm/sec)   p_kst 6.995885e-06   p_cons 2.367263e-01   p_joint 5.555556e-06

Joint ci ratio: 7.408082e-01	ci left: 3.653631e-06	ci right 8.066434e-06	k: 27	n:4870000
Cons ci ratio: 3.189638e-03	ci left: 2.363461e-01	ci right 2.371014e-01	k: 1152844	n:4870000
KS ci ratio: 6.625985e-01	ci left: 4.834910e-06	ci right 9.755960e-06	k: 34	n:4870000
KLK2   4870000 perm   11518 sec   (423 perm/sec)   p_kst 6.981520e-06   p_cons 2.367236e-01   p_joint 5.544148e-06

Joint ci ratio: 7.408082e-01	ci left: 3.646144e-06	ci right 8.049904e-06	k: 27	n:4880000
Cons ci ratio: 3.186421e-03	ci left: 2.363405e-01	ci right 2.370950e-01	k: 1155182	n:4880000
KS ci ratio: 6.625985e-01	ci left: 4.825002e-06	ci right 9.735969e-06	k: 34	n:4880000
KLK2   4880000 perm   11563 sec   (422 perm/sec)   p_kst 6.967213e-06   p_cons 2.367176e-01   p_joint 5.532787e-06

Joint ci ratio: 7.408082e-01	ci left: 3.638688e-06	ci right 8.033442e-06	k: 27	n:4890000
Cons ci ratio: 3.183108e-03	ci left: 2.363470e-01	ci right 2.371007e-01	k: 1157579	n:4890000
KS ci ratio: 6.625985e-01	ci left: 4.815135e-06	ci right 9.716059e-06	k: 34	n:4890000
KLK2   4890000 perm   11608 sec   (421 perm/sec)   p_kst 6.952965e-06   p_cons 2.367237e-01   p_joint 5.521472e-06

Joint ci ratio: 7.408082e-01	ci left: 3.631262e-06	ci right 8.017048e-06	k: 27	n:4900000
Cons ci ratio: 3.179814e-03	ci left: 2.363525e-01	ci right 2.371054e-01	k: 1159971	n:4900000
KS ci ratio: 6.625985e-01	ci left: 4.805308e-06	ci right 9.696230e-06	k: 34	n:4900000
KLK2   4900000 perm   11652 sec   (421 perm/sec)   p_kst 6.938776e-06   p_cons 2.367288e-01   p_joint 5.510204e-06

Joint ci ratio: 7.408082e-01	ci left: 3.623867e-06	ci right 8.000720e-06	k: 27	n:4910000
Cons ci ratio: 3.176551e-03	ci left: 2.363554e-01	ci right 2.371076e-01	k: 1162351	n:4910000
KS ci ratio: 6.625985e-01	ci left: 4.795522e-06	ci right 9.676482e-06	k: 34	n:4910000
KLK2   4910000 perm   11697 sec   (420 perm/sec)   p_kst 6.924644e-06   p_cons 2.367314e-01   p_joint 5.498982e-06

Joint ci ratio: 7.279235e-01	ci left: 3.781669e-06	ci right 8.225151e-06	k: 28	n:4920000
Cons ci ratio: 3.173251e-03	ci left: 2.363639e-01	ci right 2.371153e-01	k: 1164758	n:4920000
KS ci ratio: 6.533309e-01	ci left: 4.955042e-06	ci right 9.893589e-06	k: 35	n:4920000
KLK2   4920000 perm   11742 sec   (419 perm/sec)   p_kst 7.113821e-06   p_cons 2.367394e-01   p_joint 5.691057e-06

Joint ci ratio: 7.279235e-01	ci left: 3.773998e-06	ci right 8.208467e-06	k: 28	n:4930000
Cons ci ratio: 3.170079e-03	ci left: 2.363587e-01	ci right 2.371094e-01	k: 1167098	n:4930000
KS ci ratio: 6.533309e-01	ci left: 4.944991e-06	ci right 9.873521e-06	k: 35	n:4930000
KLK2   4930000 perm   11788 sec   (418 perm/sec)   p_kst 7.099391e-06   p_cons 2.367339e-01   p_joint 5.679513e-06

Joint ci ratio: 7.279235e-01	ci left: 3.766359e-06	ci right 8.191851e-06	k: 28	n:4940000
Cons ci ratio: 3.166751e-03	ci left: 2.363726e-01	ci right 2.371225e-01	k: 1169532	n:4940000
KS ci ratio: 6.533309e-01	ci left: 4.934981e-06	ci right 9.853534e-06	k: 35	n:4940000
KLK2   4940000 perm   11833 sec   (417 perm/sec)   p_kst 7.085020e-06   p_cons 2.367474e-01   p_joint 5.668016e-06

Joint ci ratio: 7.279235e-01	ci left: 3.758750e-06	ci right 8.175302e-06	k: 28	n:4950000
Cons ci ratio: 3.163475e-03	ci left: 2.363815e-01	ci right 2.371307e-01	k: 1171942	n:4950000
KS ci ratio: 6.533309e-01	ci left: 4.925011e-06	ci right 9.833628e-06	k: 35	n:4950000
KLK2   4950000 perm   11879 sec   (417 perm/sec)   p_kst 7.070707e-06   p_cons 2.367560e-01   p_joint 5.656566e-06

Joint ci ratio: 7.279235e-01	ci left: 3.751172e-06	ci right 8.158820e-06	k: 28	n:4960000
Cons ci ratio: 3.160254e-03	ci left: 2.363854e-01	ci right 2.371338e-01	k: 1174327	n:4960000
KS ci ratio: 6.533309e-01	ci left: 4.915082e-06	ci right 9.813802e-06	k: 35	n:4960000
KLK2   4960000 perm   11924 sec   (416 perm/sec)   p_kst 7.056452e-06   p_cons 2.367595e-01   p_joint 5.645161e-06

Joint ci ratio: 7.279235e-01	ci left: 3.743624e-06	ci right 8.142403e-06	k: 28	n:4970000
Cons ci ratio: 3.157016e-03	ci left: 2.363923e-01	ci right 2.371400e-01	k: 1176727	n:4970000
KS ci ratio: 6.533309e-01	ci left: 4.905192e-06	ci right 9.794056e-06	k: 35	n:4970000
KLK2   4970000 perm   11970 sec   (415 perm/sec)   p_kst 7.042254e-06   p_cons 2.367660e-01   p_joint 5.633803e-06

Joint ci ratio: 7.279235e-01	ci left: 3.736107e-06	ci right 8.126053e-06	k: 28	n:4980000
Cons ci ratio: 3.153930e-03	ci left: 2.363829e-01	ci right 2.371298e-01	k: 1179046	n:4980000
KS ci ratio: 6.533309e-01	ci left: 4.895343e-06	ci right 9.774390e-06	k: 35	n:4980000
KLK2   4980000 perm   12015 sec   (414 perm/sec)   p_kst 7.028112e-06   p_cons 2.367562e-01   p_joint 5.622490e-06

Joint ci ratio: 7.279235e-01	ci left: 3.728620e-06	ci right 8.109769e-06	k: 28	n:4990000
Cons ci ratio: 3.150769e-03	ci left: 2.363832e-01	ci right 2.371293e-01	k: 1181413	n:4990000
KS ci ratio: 6.533309e-01	ci left: 4.885532e-06	ci right 9.754802e-06	k: 35	n:4990000
KLK2   4990000 perm   12061 sec   (414 perm/sec)   p_kst 7.014028e-06   p_cons 2.367561e-01   p_joint 5.611222e-06

Joint ci ratio: 7.279235e-01	ci left: 3.721162e-06	ci right 8.093549e-06	k: 28	n:5000000
Cons ci ratio: 3.147616e-03	ci left: 2.363837e-01	ci right 2.371291e-01	k: 1183781	n:5000000
KS ci ratio: 6.533309e-01	ci left: 4.875761e-06	ci right 9.735292e-06	k: 35	n:5000000
KLK2   5000000 perm   12107 sec   (413 perm/sec)   p_kst 7.000000e-06   p_cons 2.367562e-01   p_joint 5.600000e-06

Outputting figure to mutsig2_images.part000000000092/KLK2.3_843_5000000_7e-06_0.23676_5.6e-06.png
                gene_name: KLK2
               theta_stop: 0.73 
                    nperm: 5000000 
                     p_ks: 7.00e-06 
        ci_ks_bounds_left: 4.88e-06 
       ci_ks_bounds_right: 9.74e-06 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.24 
                  p_joint: 5.60e-06 
     ci_joint_bounds_left: 3.72e-06 
    ci_joint_bounds_right: 8.09e-06 

Current progress: 72 percent done.
KLK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.560377e-02	ci left: 5.380825e-01	ci right 5.576896e-01	k: 5479	n:10000
Cons ci ratio: 2.342233e-02	ci left: 7.281518e-01	ci right 7.455101e-01	k: 7369	n:10000
KS ci ratio: 6.152973e-02	ci left: 2.797318e-01	ci right 2.975915e-01	k: 2886	n:10000
KLK5   10000 perm   2 sec   (6463 perm/sec)   p_kst 2.886000e-01   p_cons 7.369000e-01   p_joint 5.479000e-01

Outputting figure to mutsig2_images.part000000000092/KLK5.3_902_10000_0.2886_0.7369_0.5479.png
                gene_name: KLK5
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 74 percent done.
KIR2DL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.054524e-01	ci left: 1.149621e-01	ci right 1.278593e-01	k: 1213	n:10000
Cons ci ratio: 1.286912e-01	ci left: 7.941135e-02	ci right 9.043186e-02	k: 848	n:10000
KS ci ratio: 3.305359e-02	ci left: 5.746674e-01	ci right 5.940834e-01	k: 5844	n:10000
KIR2DL4   10000 perm   2 sec   (6509 perm/sec)   p_kst 5.844000e-01   p_cons 8.480000e-02   p_joint 1.213000e-01

Joint ci ratio: 9.216170e-02	ci left: 7.911446e-02	ci right 8.680729e-02	k: 1658	n:20000
Cons ci ratio: 9.305140e-02	ci left: 7.769525e-02	ci right 8.532694e-02	k: 1629	n:20000
KS ci ratio: 2.357885e-02	ci left: 5.732738e-01	ci right 5.870028e-01	k: 11603	n:20000
KIR2DL4   20000 perm   3 sec   (5789 perm/sec)   p_kst 5.801500e-01   p_cons 8.145000e-02   p_joint 8.290000e-02

Outputting figure to mutsig2_images.part000000000092/KIR2DL4.2_1165_20000_0.58015_0.08145_0.0829.png
                gene_name: KIR2DL4
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.087 

Current progress: 75 percent done.
KITLG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.805903e-03	ci left: 9.934134e-01	ci right 9.962867e-01	k: 9950	n:10000
KS ci ratio: 7.830018e-02	ci left: 1.924939e-01	ci right 2.082810e-01	k: 2003	n:10000
KITLG   10000 perm   1 sec   (6917 perm/sec)   p_kst 2.003000e-01   p_cons 9.950000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KITLG.2_858_10000_0.2003_0.995_1.png
                gene_name: KITLG
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
KLC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.274638e-02	ci left: 7.394702e-01	ci right 7.565851e-01	k: 7481	n:10000
Cons ci ratio: 2.740328e-02	ci left: 6.623971e-01	ci right 6.809028e-01	k: 6717	n:10000
KS ci ratio: 4.279990e-02	ci left: 4.463020e-01	ci right 4.659236e-01	k: 4561	n:10000
KLC1   10000 perm   2 sec   (5965 perm/sec)   p_kst 4.561000e-01   p_cons 6.717000e-01   p_joint 7.481000e-01

Outputting figure to mutsig2_images.part000000000092/KLC1.2_1954_10000_0.4561_0.6717_0.7481.png
                gene_name: KLC1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 79 percent done.
KLF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.849639e-02	ci left: 3.007434e-01	ci right 3.189675e-01	k: 3098	n:10000
Cons ci ratio: 1.469819e-01	ci left: 6.150035e-02	ci right 7.135407e-02	k: 663	n:10000
KS ci ratio: 1.684847e-02	ci left: 8.368400e-01	ci right 8.511590e-01	k: 8441	n:10000
KLF11   10000 perm   2 sec   (6137 perm/sec)   p_kst 8.441000e-01   p_cons 6.630000e-02   p_joint 3.098000e-01

Joint ci ratio: 4.219998e-02	ci left: 2.949951e-01	ci right 3.077627e-01	k: 6027	n:20000
Cons ci ratio: 1.042709e-01	ci left: 6.254854e-02	ci right 6.947828e-02	k: 1319	n:20000
KS ci ratio: 1.198984e-02	ci left: 8.372755e-01	ci right 8.474247e-01	k: 16848	n:20000
KLF11   20000 perm   4 sec   (5441 perm/sec)   p_kst 8.424000e-01   p_cons 6.595000e-02   p_joint 3.013500e-01

Joint ci ratio: 1.910462e-02	ci left: 5.782977e-01	ci right 5.894860e-01	k: 17517	n:30000
Cons ci ratio: 8.571830e-02	ci left: 6.236657e-02	ci right 6.798467e-02	k: 1954	n:30000
KS ci ratio: 9.810368e-03	ci left: 8.376545e-01	ci right 8.459459e-01	k: 25255	n:30000
KLF11   30000 perm   6 sec   (5151 perm/sec)   p_kst 8.418333e-01   p_cons 6.513333e-02   p_joint 5.839000e-01

Outputting figure to mutsig2_images.part000000000092/KLF11.2_1555_30000_0.84183_0.065133_0.5839.png
                gene_name: KLF11
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 81 percent done.
KLF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.365600e-03	ci left: 9.788782e-01	ci right 9.842360e-01	k: 9817	n:10000
Cons ci ratio: 3.084238e-02	ci left: 6.079920e-01	ci right 6.271395e-01	k: 6176	n:10000
KS ci ratio: 3.071196e-02	ci left: 6.100009e-01	ci right 6.291294e-01	k: 6196	n:10000
KLF12   10000 perm   2 sec   (6060 perm/sec)   p_kst 6.196000e-01   p_cons 6.176000e-01   p_joint 9.817000e-01

Outputting figure to mutsig2_images.part000000000092/KLF12.2_1237_10000_0.6196_0.6176_0.9817.png
                gene_name: KLF12
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 83 percent done.
KLF14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.748370e-02	ci left: 5.124546e-01	ci right 5.321324e-01	k: 5223	n:10000
Cons ci ratio: 5.906185e-02	ci left: 2.966780e-01	ci right 3.148353e-01	k: 3057	n:10000
KS ci ratio: 2.249299e-02	ci left: 7.437166e-01	ci right 7.607363e-01	k: 7523	n:10000
KLF14   10000 perm   2 sec   (6530 perm/sec)   p_kst 7.523000e-01   p_cons 3.057000e-01   p_joint 5.223000e-01

Outputting figure to mutsig2_images.part000000000092/KLF14.2_976_10000_0.7523_0.3057_0.5223.png
                gene_name: KLF14
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 85 percent done.
KLF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.641604e-02	ci left: 5.268671e-01	ci right 5.465115e-01	k: 5367	n:10000
Cons ci ratio: 3.455280e-02	ci left: 5.529105e-01	ci right 5.724530e-01	k: 5627	n:10000
KS ci ratio: 4.717107e-02	ci left: 3.987439e-01	ci right 4.181095e-01	k: 4084	n:10000
KLF3   10000 perm   2 sec   (6380 perm/sec)   p_kst 4.084000e-01   p_cons 5.627000e-01   p_joint 5.367000e-01

Outputting figure to mutsig2_images.part000000000092/KLF3.2_1058_10000_0.4084_0.5627_0.5367.png
                gene_name: KLF3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 87 percent done.
KLF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
Cons ci ratio: 1.339316e-01	ci left: 7.359257e-02	ci right 8.425426e-02	k: 788	n:10000
KS ci ratio: 5.841444e-02	ci left: 3.013384e-01	ci right 3.195722e-01	k: 3104	n:10000
KLF4   10000 perm   2 sec   (6182 perm/sec)   p_kst 3.104000e-01   p_cons 7.880000e-02   p_joint 1.336000e-01

Joint ci ratio: 1.014994e-01	ci left: 6.586692e-02	ci right 7.295888e-02	k: 1387	n:20000
Cons ci ratio: 9.418845e-02	ci left: 7.593396e-02	ci right 8.348877e-02	k: 1593	n:20000
KS ci ratio: 4.092738e-02	ci left: 3.079679e-01	ci right 3.208861e-01	k: 6288	n:20000
KLF4   20000 perm   4 sec   (5484 perm/sec)   p_kst 3.144000e-01   p_cons 7.965000e-02   p_joint 6.935000e-02

Joint ci ratio: 6.977142e-02	ci left: 9.186873e-02	ci right 9.854323e-02	k: 2855	n:30000
Cons ci ratio: 7.773835e-02	ci left: 7.508792e-02	ci right 8.119407e-02	k: 2343	n:30000
KS ci ratio: 3.331017e-02	ci left: 3.105414e-01	ci right 3.210943e-01	k: 9474	n:30000
KLF4   30000 perm   6 sec   (5210 perm/sec)   p_kst 3.158000e-01   p_cons 7.810000e-02   p_joint 9.516667e-02

Outputting figure to mutsig2_images.part000000000092/KLF4.2_1460_30000_0.3158_0.0781_0.095167.png
                gene_name: KLF4
               theta_stop: 0.078 
                    nperm: 30000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.099 

Current progress: 89 percent done.
KLF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.511784e-02	ci left: 5.448942e-01	ci right 5.644739e-01	k: 5547	n:10000
Cons ci ratio: 4.707361e-02	ci left: 3.997400e-01	ci right 4.191128e-01	k: 4094	n:10000
KS ci ratio: 3.216342e-02	ci left: 5.879114e-01	ci right 6.072317e-01	k: 5976	n:10000
KLF5   10000 perm   2 sec   (6159 perm/sec)   p_kst 5.976000e-01   p_cons 4.094000e-01   p_joint 5.547000e-01

Outputting figure to mutsig2_images.part000000000092/KLF5.2_1390_10000_0.5976_0.4094_0.5547.png
                gene_name: KLF5
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 91 percent done.
KLHDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.273467e-02	ci left: 2.719080e-01	ci right 2.896199e-01	k: 2807	n:10000
Cons ci ratio: 1.656929e-01	ci left: 4.859368e-02	ci right 5.746898e-02	k: 529	n:10000
KS ci ratio: 3.005765e-02	ci left: 6.201489e-01	ci right 6.391755e-01	k: 6297	n:10000
KLHDC2   10000 perm   2 sec   (6223 perm/sec)   p_kst 6.297000e-01   p_cons 5.290000e-02   p_joint 2.807000e-01

Joint ci ratio: 4.832532e-02	ci left: 2.415310e-01	ci right 2.535424e-01	k: 4950	n:20000
Cons ci ratio: 1.330417e-01	ci left: 3.882614e-02	ci right 4.440812e-02	k: 831	n:20000
KS ci ratio: 2.158663e-02	ci left: 6.156891e-01	ci right 6.291753e-01	k: 12449	n:20000
KLHDC2   20000 perm   4 sec   (5594 perm/sec)   p_kst 6.224500e-01   p_cons 4.155000e-02   p_joint 2.475000e-01

Joint ci ratio: 7.716840e-02	ci left: 7.613559e-02	ci right 8.227953e-02	k: 2375	n:30000
Cons ci ratio: 1.083124e-01	ci left: 3.956314e-02	ci right 4.412613e-02	k: 1254	n:30000
KS ci ratio: 1.766134e-02	ci left: 6.159834e-01	ci right 6.269930e-01	k: 18645	n:30000
KLHDC2   30000 perm   6 sec   (5333 perm/sec)   p_kst 6.215000e-01   p_cons 4.180000e-02   p_joint 7.916667e-02

Joint ci ratio: 6.742117e-02	ci left: 7.529172e-02	ci right 8.056975e-02	k: 3116	n:40000
Cons ci ratio: 9.446145e-02	ci left: 3.932200e-02	ci right 4.324495e-02	k: 1650	n:40000
KS ci ratio: 1.531806e-02	ci left: 6.160241e-01	ci right 6.255583e-01	k: 24832	n:40000
KLHDC2   40000 perm   8 sec   (5114 perm/sec)   p_kst 6.208000e-01   p_cons 4.125000e-02   p_joint 7.790000e-02

Outputting figure to mutsig2_images.part000000000092/KLHDC2.2_1273_40000_0.6208_0.04125_0.0779.png
                gene_name: KLHDC2
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.081 

Current progress: 92 percent done.
KLHL10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.408115e-02	ci left: 7.171434e-01	ci right 7.347248e-01	k: 7260	n:10000
Cons ci ratio: 5.539147e-02	ci left: 3.243584e-01	ci right 3.429386e-01	k: 3336	n:10000
KS ci ratio: 2.981327e-02	ci left: 6.239682e-01	ci right 6.429540e-01	k: 6335	n:10000
KLHL10   10000 perm   2 sec   (6092 perm/sec)   p_kst 6.335000e-01   p_cons 3.336000e-01   p_joint 7.260000e-01

Outputting figure to mutsig2_images.part000000000092/KLHL10.2_1847_10000_0.6335_0.3336_0.726.png
                gene_name: KLHL10
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 94 percent done.
KLHL8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.320071e-02	ci left: 8.921069e-01	ci right 9.040601e-01	k: 8982	n:10000
KS ci ratio: 4.167040e-02	ci left: 4.595787e-01	ci right 4.792392e-01	k: 4694	n:10000
KLHL8   10000 perm   2 sec   (5910 perm/sec)   p_kst 4.694000e-01   p_cons 8.982000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000092/KLHL8.2_1899_10000_0.4694_0.8982_1.png
                gene_name: KLHL8
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
KLK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.664246e-03	ci left: 9.491889e-01	ci right 9.575444e-01	k: 9535	n:10000
Cons ci ratio: 3.168419e-02	ci left: 5.951385e-01	ci right 6.144005e-01	k: 6048	n:10000
KS ci ratio: 3.925687e-02	ci left: 4.893516e-01	ci right 5.090488e-01	k: 4992	n:10000
KLK1   10000 perm   2 sec   (6526 perm/sec)   p_kst 4.992000e-01   p_cons 6.048000e-01   p_joint 9.535000e-01

Outputting figure to mutsig2_images.part000000000092/KLK1.2_809_10000_0.4992_0.6048_0.9535.png
                gene_name: KLK1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 98 percent done.
KLK13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.664801e-02	ci left: 4.041232e-01	ci right 4.235270e-01	k: 4138	n:10000
Cons ci ratio: 7.058784e-02	ci left: 2.273104e-01	ci right 2.440439e-01	k: 2356	n:10000
KS ci ratio: 5.784639e-02	ci left: 3.055038e-01	ci right 3.238042e-01	k: 3146	n:10000
KLK13   10000 perm   2 sec   (6610 perm/sec)   p_kst 3.146000e-01   p_cons 2.356000e-01   p_joint 4.138000e-01

Outputting figure to mutsig2_images.part000000000092/KLK13.2_854_10000_0.3146_0.2356_0.4138.png
                gene_name: KLK13
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000092
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 92 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1647>
Subject: Job 9893992: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1647>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000093> was used as the working directory.
Started at Sat Oct  6 00:15:45 2012
Results reported at Sat Oct  6 04:27:47 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000093.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000093.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 93  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000093.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  15285.12 sec.
    Max Memory :      3442 MB
    Max Swap   :      5980 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
93
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 93
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 93: processing genes 8295 - 8384
Calculating significance of each gene.
Using projection method.
8295	KLKB1	1.638599e-01
8296	KLRAQ1	1.979777e-01
8297	KLRB1	3.464604e-02
8298	KLRC1	1
8299	KLRC2	1
8300	KLRC3	8.601664e-02
8301	KLRC4	4.224857e-01
8302	KLRD1	4.836262e-01
8303	KLRF1	1.827227e-01
8304	KLRG1	1
8305	KLRG2	7.540606e-01
8306	KLRK1	8.065549e-02
8307	KMO	2.009544e-01
8308	KNCN	1
8309	KNDC1	6.808855e-01
8310	KNG1	5.769259e-01
8311	KNTC1	9.639820e-01
8312	KPNA1	9.050593e-02
8313	KPNA2	1
8314	KPNA3	5.164270e-01
8315	KPNA4	3.263201e-01
8316	KPNA5	1.515720e-01
8317	KPNA6	2.093380e-01
8318	KPNB1	9.049620e-01
8319	KPRP	7.887353e-01
8320	KPTN	1
8321	KRAS	0
8322	KRBA1	9.682291e-01
8323	KRBA2	3.501196e-01
8324	KRCC1	7.239552e-01
8325	KREMEN1	4.554515e-01
8326	KREMEN2	5.109707e-01
8327	KRI1	7.908021e-01
8328	KRIT1	9.813067e-02
8329	KRR1	8.637472e-01
8330	KRT1	5.508769e-01
8331	KRT10	8.928275e-01
8332	KRT12	8.584310e-01
8333	KRT13	1.807883e-01
8334	KRT14	9.600276e-01
8335	KRT15	4.208504e-01
8336	KRT16	8.293724e-01
8337	KRT17	5.443056e-01
8338	KRT18	5.497435e-01
8339	KRT19	7.796475e-01
8340	KRT2	9.516820e-01
8341	KRT20	9.158498e-01
8342	KRT222	3.494566e-01
8343	KRT23	7.866869e-01
8344	KRT24	8.121816e-01
8345	KRT25	3.212093e-01
8346	KRT26	3.535191e-01
8347	KRT27	6.997256e-01
8348	KRT28	7.885729e-01
8349	KRT3	5.898742e-02
8350	KRT31	4.236034e-01
8351	KRT32	6.387011e-01
8352	KRT33A	5.776919e-01
8353	KRT33B	3.678902e-01
8354	KRT34	3.169236e-01
8355	KRT35	7.802532e-01
8356	KRT36	7.422773e-01
8357	KRT37	6.274884e-02
8358	KRT38	5.845854e-01
8359	KRT39	1
8360	KRT4	8.251010e-01
8361	KRT40	1
8362	KRT5	6.739445e-01
8363	KRT6A	3.367946e-01
8364	KRT6B	7.878952e-01
8365	KRT6C	6.780882e-01
8366	KRT7	4.204717e-01
8367	KRT71	5.722187e-01
8368	KRT72	2.064252e-01
8369	KRT73	1.462469e-01
8370	KRT74	2.006177e-01
8371	KRT75	9.252713e-02
8372	KRT76	6.161141e-01
8373	KRT77	9.566388e-01
8374	KRT78	2.282045e-01
8375	KRT79	6.111669e-01
8376	KRT8	9.384890e-01
8377	KRT80	7.993538e-01
8378	KRT81	6.419429e-01
8379	KRT82	4.634743e-02
8380	KRT83	9.126965e-01
8381	KRT84	7.435541e-03
8382	KRT85	5.903703e-02
8383	KRT86	1
8384	KRT9	2.328385e-01
Done

Running MutSig 2:
Scatter job 93: processing genes 8295 - 8384
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
KRAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KRAS   10000 perm   4 sec   (2317 perm/sec)   p_kst 1.000000e-04   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KRAS   20000 perm   13 sec   (1569 perm/sec)   p_kst 5.000000e-05   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KRAS   30000 perm   16 sec   (1822 perm/sec)   p_kst 3.333333e-05   p_cons 3.333333e-05   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
KRAS   40000 perm   20 sec   (1982 perm/sec)   p_kst 2.500000e-05   p_cons 2.500000e-05   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
KRAS   50000 perm   24 sec   (2082 perm/sec)   p_kst 2.000000e-05   p_cons 2.000000e-05   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 1.239499e+00	ci left: 6.859177e-05	ci right 2.847275e-04	k: 9	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KRAS   60000 perm   28 sec   (2129 perm/sec)   p_kst 1.666667e-05   p_cons 1.500000e-04   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 1.047552e+00	ci left: 9.888862e-05	ci right 3.175561e-04	k: 13	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
KRAS   70000 perm   32 sec   (2171 perm/sec)   p_kst 1.428571e-05   p_cons 1.857143e-04   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 9.506327e-01	ci left: 1.143215e-04	ci right 3.247672e-04	k: 16	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
KRAS   80000 perm   36 sec   (2205 perm/sec)   p_kst 1.250000e-05   p_cons 2.000000e-04   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 8.992098e-01	ci left: 1.185368e-04	ci right 3.160679e-04	k: 18	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
KRAS   90000 perm   40 sec   (2227 perm/sec)   p_kst 1.111111e-05   p_cons 2.000000e-04   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 8.356507e-01	ci left: 1.299979e-04	ci right 3.209895e-04	k: 21	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
KRAS   100000 perm   45 sec   (2234 perm/sec)   p_kst 1.000000e-05   p_cons 2.100000e-04   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 8.000757e-01	ci left: 1.325502e-04	ci right 3.137226e-04	k: 23	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
KRAS   110000 perm   49 sec   (2243 perm/sec)   p_kst 9.090909e-06   p_cons 2.090909e-04   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 1.131545e+00	ci left: 4.576053e-05	ci right 1.640111e-04	k: 11	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
KRAS   120000 perm   53 sec   (2248 perm/sec)   p_kst 8.333333e-06   p_cons 9.166667e-05   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 1.131550e+00	ci left: 4.224043e-05	ci right 1.513952e-04	k: 11	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
KRAS   130000 perm   58 sec   (2249 perm/sec)   p_kst 7.692308e-06   p_cons 8.461538e-05   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 1.047608e+00	ci left: 4.944341e-05	ci right 1.587833e-04	k: 13	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
KRAS   140000 perm   62 sec   (2251 perm/sec)   p_kst 7.142857e-06   p_cons 9.285714e-05   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 1.012086e+00	ci left: 5.102711e-05	ci right 1.565925e-04	k: 14	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
KRAS   150000 perm   67 sec   (2248 perm/sec)   p_kst 6.666667e-06   p_cons 9.333333e-05   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 9.799479e-01	ci left: 5.247208e-05	ci right 1.546217e-04	k: 15	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
KRAS   160000 perm   71 sec   (2244 perm/sec)   p_kst 6.250000e-06   p_cons 9.375000e-05   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 9.799510e-01	ci left: 4.938544e-05	ci right 1.455265e-04	k: 15	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
KRAS   170000 perm   76 sec   (2238 perm/sec)   p_kst 5.882353e-06   p_cons 8.823529e-05   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 9.506921e-01	ci left: 5.080851e-05	ci right 1.443460e-04	k: 16	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
KRAS   180000 perm   81 sec   (2231 perm/sec)   p_kst 5.555556e-06   p_cons 8.888889e-05   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 1.239577e+00	ci left: 2.166008e-05	ci right 8.991811e-05	k: 9	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
KRAS   190000 perm   86 sec   (2221 perm/sec)   p_kst 5.263158e-06   p_cons 4.736842e-05   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 1.181889e+00	ci left: 2.397720e-05	ci right 9.194985e-05	k: 10	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
KRAS   200000 perm   90 sec   (2214 perm/sec)   p_kst 5.000000e-06   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 1.181891e+00	ci left: 2.283541e-05	ci right 8.757137e-05	k: 10	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
KRAS   210000 perm   95 sec   (2204 perm/sec)   p_kst 4.761905e-06   p_cons 4.761905e-05   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 1.131573e+00	ci left: 2.496008e-05	ci right 8.946205e-05	k: 11	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
KRAS   220000 perm   100 sec   (2193 perm/sec)   p_kst 4.545455e-06   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 1.239583e+00	ci left: 1.789308e-05	ci right 7.428045e-05	k: 9	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
KRAS   230000 perm   105 sec   (2181 perm/sec)   p_kst 4.347826e-06   p_cons 3.913043e-05   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 1.181895e+00	ci left: 1.998096e-05	ci right 7.662514e-05	k: 10	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
KRAS   240000 perm   111 sec   (2168 perm/sec)   p_kst 4.166667e-06   p_cons 4.166667e-05   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 1.181896e+00	ci left: 1.918172e-05	ci right 7.356019e-05	k: 10	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
KRAS   250000 perm   116 sec   (2155 perm/sec)   p_kst 4.000000e-06   p_cons 4.000000e-05   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 1.181897e+00	ci left: 1.844395e-05	ci right 7.073100e-05	k: 10	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
KRAS   260000 perm   122 sec   (2138 perm/sec)   p_kst 3.846154e-06   p_cons 3.846154e-05   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 1.306642e+00	ci left: 1.279206e-05	ci right 5.838134e-05	k: 8	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
KRAS   270000 perm   127 sec   (2125 perm/sec)   p_kst 3.703704e-06   p_cons 2.962963e-05   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 1.306643e+00	ci left: 1.233519e-05	ci right 5.629632e-05	k: 8	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
KRAS   280000 perm   133 sec   (2112 perm/sec)   p_kst 3.571429e-06   p_cons 2.857143e-05   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 1.181900e+00	ci left: 1.653594e-05	ci right 6.341410e-05	k: 10	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
KRAS   290000 perm   138 sec   (2096 perm/sec)   p_kst 3.448276e-06   p_cons 3.448276e-05   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 1.131582e+00	ci left: 1.830401e-05	ci right 6.560585e-05	k: 11	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
KRAS   300000 perm   144 sec   (2082 perm/sec)   p_kst 3.333333e-06   p_cons 3.666667e-05   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 1.131583e+00	ci left: 1.771355e-05	ci right 6.348956e-05	k: 11	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
KRAS   310000 perm   150 sec   (2070 perm/sec)   p_kst 3.225806e-06   p_cons 3.548387e-05   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 1.087189e+00	ci left: 1.937694e-05	ci right 6.550404e-05	k: 12	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
KRAS   320000 perm   156 sec   (2057 perm/sec)   p_kst 3.125000e-06   p_cons 3.750000e-05   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 1.087189e+00	ci left: 1.878976e-05	ci right 6.351909e-05	k: 12	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
KRAS   330000 perm   161 sec   (2044 perm/sec)   p_kst 3.030303e-06   p_cons 3.636364e-05   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 1.087190e+00	ci left: 1.823711e-05	ci right 6.165091e-05	k: 12	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
KRAS   340000 perm   167 sec   (2030 perm/sec)   p_kst 2.941176e-06   p_cons 3.529412e-05   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 1.012117e+00	ci left: 2.186854e-05	ci right 6.711229e-05	k: 14	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
KRAS   350000 perm   174 sec   (2015 perm/sec)   p_kst 2.857143e-06   p_cons 4.000000e-05   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 9.799769e-01	ci left: 2.332070e-05	ci right 6.872190e-05	k: 15	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
KRAS   360000 perm   180 sec   (2000 perm/sec)   p_kst 2.777778e-06   p_cons 4.166667e-05   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 9.799775e-01	ci left: 2.269040e-05	ci right 6.686458e-05	k: 15	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
KRAS   370000 perm   186 sec   (1986 perm/sec)   p_kst 2.702703e-06   p_cons 4.054054e-05   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 9.799781e-01	ci left: 2.209328e-05	ci right 6.510500e-05	k: 15	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
KRAS   380000 perm   193 sec   (1974 perm/sec)   p_kst 2.631579e-06   p_cons 3.947368e-05   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 9.799786e-01	ci left: 2.152679e-05	ci right 6.343567e-05	k: 15	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
KRAS   390000 perm   199 sec   (1963 perm/sec)   p_kst 2.564103e-06   p_cons 3.846154e-05   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 9.799792e-01	ci left: 2.098861e-05	ci right 6.184979e-05	k: 15	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
KRAS   400000 perm   205 sec   (1950 perm/sec)   p_kst 2.500000e-06   p_cons 3.750000e-05   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 9.799797e-01	ci left: 2.047669e-05	ci right 6.034128e-05	k: 15	n:410000
KS ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
KRAS   410000 perm   212 sec   (1938 perm/sec)   p_kst 2.439024e-06   p_cons 3.658537e-05   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 9.799802e-01	ci left: 1.998915e-05	ci right 5.890460e-05	k: 15	n:420000
KS ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
KRAS   420000 perm   218 sec   (1925 perm/sec)   p_kst 2.380952e-06   p_cons 3.571429e-05   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 9.799806e-01	ci left: 1.952428e-05	ci right 5.753474e-05	k: 15	n:430000
KS ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
KRAS   430000 perm   225 sec   (1913 perm/sec)   p_kst 2.325581e-06   p_cons 3.488372e-05   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 9.507202e-01	ci left: 2.078510e-05	ci right 5.905160e-05	k: 16	n:440000
KS ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
KRAS   440000 perm   232 sec   (1900 perm/sec)   p_kst 2.272727e-06   p_cons 3.636364e-05   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 9.507206e-01	ci left: 2.032320e-05	ci right 5.773935e-05	k: 16	n:450000
KS ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
KRAS   450000 perm   238 sec   (1888 perm/sec)   p_kst 2.222222e-06   p_cons 3.555556e-05   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 9.507210e-01	ci left: 1.988139e-05	ci right 5.648416e-05	k: 16	n:460000
KS ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
KRAS   460000 perm   245 sec   (1877 perm/sec)   p_kst 2.173913e-06   p_cons 3.478261e-05   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 9.507214e-01	ci left: 1.945838e-05	ci right 5.528239e-05	k: 16	n:470000
KS ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
KRAS   470000 perm   252 sec   (1866 perm/sec)   p_kst 2.127660e-06   p_cons 3.404255e-05   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 9.507218e-01	ci left: 1.905300e-05	ci right 5.413068e-05	k: 16	n:480000
KS ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
KRAS   480000 perm   259 sec   (1855 perm/sec)   p_kst 2.083333e-06   p_cons 3.333333e-05   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 9.507222e-01	ci left: 1.866416e-05	ci right 5.302599e-05	k: 16	n:490000
KS ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
KRAS   490000 perm   266 sec   (1844 perm/sec)   p_kst 2.040816e-06   p_cons 3.265306e-05   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 9.239353e-01	ci left: 1.980637e-05	ci right 5.443674e-05	k: 17	n:500000
KS ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
KRAS   500000 perm   273 sec   (1833 perm/sec)   p_kst 2.000000e-06   p_cons 3.400000e-05   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 9.239356e-01	ci left: 1.941801e-05	ci right 5.336936e-05	k: 17	n:510000
KS ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
KRAS   510000 perm   280 sec   (1822 perm/sec)   p_kst 1.960784e-06   p_cons 3.333333e-05   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 9.239360e-01	ci left: 1.904459e-05	ci right 5.234304e-05	k: 17	n:520000
KS ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
KRAS   520000 perm   287 sec   (1811 perm/sec)   p_kst 1.923077e-06   p_cons 3.269231e-05   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 8.765213e-01	ci left: 2.158361e-05	ci right 5.598218e-05	k: 19	n:530000
KS ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
KRAS   530000 perm   294 sec   (1801 perm/sec)   p_kst 1.886792e-06   p_cons 3.584906e-05   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 3.348654e-01	ci left: 2.113087e-04	ci right 2.979057e-04	k: 136	n:540000
KS ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
KRAS   540000 perm   302 sec   (1788 perm/sec)   p_kst 1.851852e-06   p_cons 2.518519e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 3.312580e-01	ci left: 2.124652e-04	ci right 2.983982e-04	k: 139	n:550000
KS ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
KRAS   550000 perm   309 sec   (1777 perm/sec)   p_kst 1.818182e-06   p_cons 2.527273e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 3.289171e-01	ci left: 2.119466e-04	ci right 2.969360e-04	k: 141	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
KRAS   560000 perm   317 sec   (1767 perm/sec)   p_kst 1.785714e-06   p_cons 2.517857e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 3.277655e-01	ci left: 2.098380e-04	ci right 2.936252e-04	k: 142	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
KRAS   570000 perm   324 sec   (1757 perm/sec)   p_kst 1.754386e-06   p_cons 2.491228e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 3.266258e-01	ci left: 2.078026e-04	ci right 2.904280e-04	k: 143	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
KRAS   580000 perm   332 sec   (1747 perm/sec)   p_kst 1.724138e-06   p_cons 2.465517e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 3.243811e-01	ci left: 2.073934e-04	ci right 2.891714e-04	k: 145	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
KRAS   590000 perm   340 sec   (1735 perm/sec)   p_kst 1.694915e-06   p_cons 2.457627e-04   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 3.200264e-01	ci left: 2.100644e-04	ci right 2.915558e-04	k: 149	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
KRAS   600000 perm   348 sec   (1723 perm/sec)   p_kst 1.666667e-06   p_cons 2.483333e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 3.200270e-01	ci left: 2.066207e-04	ci right 2.867763e-04	k: 149	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
KRAS   610000 perm   356 sec   (1713 perm/sec)   p_kst 1.639344e-06   p_cons 2.442623e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 3.179148e-01	ci left: 2.062557e-04	ci right 2.856340e-04	k: 151	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
KRAS   620000 perm   364 sec   (1703 perm/sec)   p_kst 1.612903e-06   p_cons 2.435484e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 3.148230e-01	ci left: 2.073656e-04	ci right 2.862389e-04	k: 154	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
KRAS   630000 perm   372 sec   (1692 perm/sec)   p_kst 1.587302e-06   p_cons 2.444444e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 3.138127e-01	ci left: 2.055648e-04	ci right 2.834518e-04	k: 155	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
KRAS   640000 perm   380 sec   (1683 perm/sec)   p_kst 1.562500e-06   p_cons 2.421875e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 3.128120e-01	ci left: 2.038197e-04	ci right 2.807501e-04	k: 156	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
KRAS   650000 perm   389 sec   (1670 perm/sec)   p_kst 1.538462e-06   p_cons 2.400000e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 3.079463e-01	ci left: 2.077174e-04	ci right 2.846601e-04	k: 161	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
KRAS   660000 perm   398 sec   (1660 perm/sec)   p_kst 1.515152e-06   p_cons 2.439394e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 3.070005e-01	ci left: 2.059945e-04	ci right 2.820188e-04	k: 162	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
KRAS   670000 perm   406 sec   (1651 perm/sec)   p_kst 1.492537e-06   p_cons 2.417910e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 3.042136e-01	ci left: 2.070387e-04	ci right 2.826205e-04	k: 165	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
KRAS   680000 perm   414 sec   (1643 perm/sec)   p_kst 1.470588e-06   p_cons 2.426471e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 3.042142e-01	ci left: 2.040381e-04	ci right 2.785246e-04	k: 165	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
KRAS   690000 perm   422 sec   (1634 perm/sec)   p_kst 1.449275e-06   p_cons 2.391304e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 3.042147e-01	ci left: 2.011232e-04	ci right 2.745458e-04	k: 165	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
KRAS   700000 perm   431 sec   (1625 perm/sec)   p_kst 1.428571e-06   p_cons 2.357143e-04   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 3.023986e-01	ci left: 2.008931e-04	ci right 2.737096e-04	k: 167	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
KRAS   710000 perm   439 sec   (1616 perm/sec)   p_kst 1.408451e-06   p_cons 2.352113e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 2.988613e-01	ci left: 2.032395e-04	ci right 2.758813e-04	k: 171	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
KRAS   720000 perm   448 sec   (1606 perm/sec)   p_kst 1.388889e-06   p_cons 2.375000e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 2.954453e-01	ci left: 2.055265e-04	ci right 2.779888e-04	k: 175	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
KRAS   730000 perm   457 sec   (1597 perm/sec)   p_kst 1.369863e-06   p_cons 2.397260e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 2.929589e-01	ci left: 2.065040e-04	ci right 2.785845e-04	k: 178	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
KRAS   740000 perm   466 sec   (1589 perm/sec)   p_kst 1.351351e-06   p_cons 2.405405e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 2.889506e-01	ci left: 2.099309e-04	ci right 2.820218e-04	k: 183	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
KRAS   750000 perm   475 sec   (1579 perm/sec)   p_kst 1.333333e-06   p_cons 2.440000e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 2.873930e-01	ci left: 2.096100e-04	ci right 2.811322e-04	k: 185	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
KRAS   760000 perm   484 sec   (1571 perm/sec)   p_kst 1.315789e-06   p_cons 2.434211e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 2.873934e-01	ci left: 2.068878e-04	ci right 2.774812e-04	k: 185	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
KRAS   770000 perm   493 sec   (1560 perm/sec)   p_kst 1.298701e-06   p_cons 2.402597e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 2.836063e-01	ci left: 2.101867e-04	ci right 2.807917e-04	k: 190	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
KRAS   780000 perm   502 sec   (1553 perm/sec)   p_kst 1.282051e-06   p_cons 2.435897e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 2.821331e-01	ci left: 2.098782e-04	ci right 2.799482e-04	k: 192	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
KRAS   790000 perm   511 sec   (1545 perm/sec)   p_kst 1.265823e-06   p_cons 2.430380e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 2.799655e-01	ci left: 2.107405e-04	ci right 2.804624e-04	k: 195	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
KRAS   800000 perm   521 sec   (1537 perm/sec)   p_kst 1.250000e-06   p_cons 2.437500e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 2.792543e-01	ci left: 2.092867e-04	ci right 2.783208e-04	k: 196	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
KRAS   810000 perm   531 sec   (1526 perm/sec)   p_kst 1.234568e-06   p_cons 2.419753e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 2.764614e-01	ci left: 2.112727e-04	ci right 2.801437e-04	k: 200	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
KRAS   820000 perm   540 sec   (1519 perm/sec)   p_kst 1.219512e-06   p_cons 2.439024e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 2.757765e-01	ci left: 2.098486e-04	ci right 2.780565e-04	k: 201	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
KRAS   830000 perm   549 sec   (1511 perm/sec)   p_kst 1.204819e-06   p_cons 2.421687e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 2.757769e-01	ci left: 2.073504e-04	ci right 2.747464e-04	k: 201	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
KRAS   840000 perm   559 sec   (1502 perm/sec)   p_kst 1.190476e-06   p_cons 2.392857e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 2.744218e-01	ci left: 2.071016e-04	ci right 2.740289e-04	k: 203	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
KRAS   850000 perm   570 sec   (1492 perm/sec)   p_kst 1.176471e-06   p_cons 2.388235e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 2.724259e-01	ci left: 2.079427e-04	ci right 2.745694e-04	k: 206	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
KRAS   860000 perm   579 sec   (1485 perm/sec)   p_kst 1.162791e-06   p_cons 2.395349e-04   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 2.711193e-01	ci left: 2.076948e-04	ci right 2.738686e-04	k: 208	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
KRAS   870000 perm   589 sec   (1477 perm/sec)   p_kst 1.149425e-06   p_cons 2.390805e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 2.698314e-01	ci left: 2.074532e-04	ci right 2.731829e-04	k: 210	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
KRAS   880000 perm   599 sec   (1470 perm/sec)   p_kst 1.136364e-06   p_cons 2.386364e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 2.691945e-01	ci left: 2.061700e-04	ci right 2.713128e-04	k: 211	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
KRAS   890000 perm   609 sec   (1463 perm/sec)   p_kst 1.123596e-06   p_cons 2.370787e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 2.679337e-01	ci left: 2.059518e-04	ci right 2.706697e-04	k: 213	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
KRAS   900000 perm   618 sec   (1456 perm/sec)   p_kst 1.111111e-06   p_cons 2.366667e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 2.673101e-01	ci left: 2.047137e-04	ci right 2.688678e-04	k: 214	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
KRAS   910000 perm   628 sec   (1449 perm/sec)   p_kst 1.098901e-06   p_cons 2.351648e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 2.648574e-01	ci left: 2.065465e-04	ci right 2.705825e-04	k: 218	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
KRAS   920000 perm   638 sec   (1442 perm/sec)   p_kst 1.086957e-06   p_cons 2.369565e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 2.648577e-01	ci left: 2.043255e-04	ci right 2.676730e-04	k: 218	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
KRAS   930000 perm   648 sec   (1435 perm/sec)   p_kst 1.075269e-06   p_cons 2.344086e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 2.636566e-01	ci left: 2.041385e-04	ci right 2.670937e-04	k: 220	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
KRAS   940000 perm   658 sec   (1429 perm/sec)   p_kst 1.063830e-06   p_cons 2.340426e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 2.618850e-01	ci left: 2.049396e-04	ci right 2.676476e-04	k: 223	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
KRAS   950000 perm   668 sec   (1422 perm/sec)   p_kst 1.052632e-06   p_cons 2.347368e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 2.595774e-01	ci left: 2.066992e-04	ci right 2.692980e-04	k: 227	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
KRAS   960000 perm   679 sec   (1415 perm/sec)   p_kst 1.041667e-06   p_cons 2.364583e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 2.590102e-01	ci left: 2.055322e-04	ci right 2.676195e-04	k: 228	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
KRAS   970000 perm   689 sec   (1408 perm/sec)   p_kst 1.030928e-06   p_cons 2.350515e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 2.546004e-01	ci left: 2.110729e-04	ci right 2.735761e-04	k: 236	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
KRAS   980000 perm   699 sec   (1401 perm/sec)   p_kst 1.020408e-06   p_cons 2.408163e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 2.535330e-01	ci left: 2.108325e-04	ci right 2.729613e-04	k: 238	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
KRAS   990000 perm   710 sec   (1395 perm/sec)   p_kst 1.010101e-06   p_cons 2.404040e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 2.530044e-01	ci left: 2.096606e-04	ci right 2.712950e-04	k: 239	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
KRAS   1000000 perm   721 sec   (1388 perm/sec)   p_kst 1.000000e-06   p_cons 2.390000e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 2.514377e-01	ci left: 2.103674e-04	ci right 2.717666e-04	k: 242	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
KRAS   1010000 perm   732 sec   (1380 perm/sec)   p_kst 9.900990e-07   p_cons 2.396040e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 2.514380e-01	ci left: 2.083049e-04	ci right 2.691022e-04	k: 242	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
KRAS   1020000 perm   743 sec   (1373 perm/sec)   p_kst 9.803922e-07   p_cons 2.372549e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 2.493936e-01	ci left: 2.099223e-04	ci right 2.706163e-04	k: 246	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
KRAS   1030000 perm   753 sec   (1367 perm/sec)   p_kst 9.708738e-07   p_cons 2.388350e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 2.483900e-01	ci left: 2.097070e-04	ci right 2.700570e-04	k: 248	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
KRAS   1040000 perm   764 sec   (1361 perm/sec)   p_kst 9.615385e-07   p_cons 2.384615e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 2.469070e-01	ci left: 2.103896e-04	ci right 2.705191e-04	k: 251	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
KRAS   1050000 perm   775 sec   (1354 perm/sec)   p_kst 9.523810e-07   p_cons 2.390476e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 2.464188e-01	ci left: 2.092899e-04	ci right 2.689686e-04	k: 252	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
KRAS   1060000 perm   786 sec   (1348 perm/sec)   p_kst 9.433962e-07   p_cons 2.377358e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 2.464190e-01	ci left: 2.073339e-04	ci right 2.664550e-04	k: 252	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
KRAS   1070000 perm   798 sec   (1342 perm/sec)   p_kst 9.345794e-07   p_cons 2.355140e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 2.459336e-01	ci left: 2.062829e-04	ci right 2.649707e-04	k: 253	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
KRAS   1080000 perm   809 sec   (1336 perm/sec)   p_kst 9.259259e-07   p_cons 2.342593e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 2.426127e-01	ci left: 2.104194e-04	ci right 2.693541e-04	k: 260	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
KRAS   1090000 perm   820 sec   (1330 perm/sec)   p_kst 9.174312e-07   p_cons 2.385321e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 2.421495e-01	ci left: 2.093604e-04	ci right 2.678696e-04	k: 261	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
KRAS   1100000 perm   831 sec   (1324 perm/sec)   p_kst 9.090909e-07   p_cons 2.372727e-04   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 2.407748e-01	ci left: 2.100135e-04	ci right 2.683223e-04	k: 264	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
KRAS   1110000 perm   842 sec   (1318 perm/sec)   p_kst 9.009009e-07   p_cons 2.378378e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 2.398714e-01	ci left: 2.098165e-04	ci right 2.678196e-04	k: 266	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
KRAS   1120000 perm   854 sec   (1312 perm/sec)   p_kst 8.928571e-07   p_cons 2.375000e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 2.389781e-01	ci left: 2.096235e-04	ci right 2.673254e-04	k: 268	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
KRAS   1130000 perm   866 sec   (1305 perm/sec)   p_kst 8.849558e-07   p_cons 2.371681e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 2.385352e-01	ci left: 2.086094e-04	ci right 2.659100e-04	k: 269	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
KRAS   1140000 perm   878 sec   (1299 perm/sec)   p_kst 8.771930e-07   p_cons 2.359649e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 2.376567e-01	ci left: 2.084308e-04	ci right 2.654404e-04	k: 271	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
KRAS   1150000 perm   890 sec   (1293 perm/sec)   p_kst 8.695652e-07   p_cons 2.356522e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 2.376569e-01	ci left: 2.066340e-04	ci right 2.631522e-04	k: 271	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
KRAS   1160000 perm   901 sec   (1287 perm/sec)   p_kst 8.620690e-07   p_cons 2.336207e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 2.372214e-01	ci left: 2.056717e-04	ci right 2.618085e-04	k: 272	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
KRAS   1170000 perm   913 sec   (1281 perm/sec)   p_kst 8.547009e-07   p_cons 2.324786e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 2.367883e-01	ci left: 2.047258e-04	ci right 2.604875e-04	k: 273	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
KRAS   1180000 perm   926 sec   (1275 perm/sec)   p_kst 8.474576e-07   p_cons 2.313559e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 2.359288e-01	ci left: 2.045866e-04	ci right 2.600785e-04	k: 275	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
KRAS   1190000 perm   938 sec   (1269 perm/sec)   p_kst 8.403361e-07   p_cons 2.310924e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 2.346569e-01	ci left: 2.052344e-04	ci right 2.605583e-04	k: 278	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
KRAS   1200000 perm   950 sec   (1263 perm/sec)   p_kst 8.333333e-07   p_cons 2.316667e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 2.342376e-01	ci left: 2.043161e-04	ci right 2.592798e-04	k: 279	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
KRAS   1210000 perm   962 sec   (1258 perm/sec)   p_kst 8.264463e-07   p_cons 2.305785e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 2.329927e-01	ci left: 2.049565e-04	ci right 2.597573e-04	k: 282	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
KRAS   1220000 perm   974 sec   (1252 perm/sec)   p_kst 8.196721e-07   p_cons 2.311475e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 2.313632e-01	ci left: 2.063531e-04	ci right 2.610862e-04	k: 286	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
KRAS   1230000 perm   987 sec   (1246 perm/sec)   p_kst 8.130081e-07   p_cons 2.325203e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 2.309613e-01	ci left: 2.054487e-04	ci right 2.598338e-04	k: 287	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
KRAS   1240000 perm   999 sec   (1241 perm/sec)   p_kst 8.064516e-07   p_cons 2.314516e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 2.305615e-01	ci left: 2.045588e-04	ci right 2.586013e-04	k: 288	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
KRAS   1250000 perm   1012 sec   (1236 perm/sec)   p_kst 8.000000e-07   p_cons 2.304000e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 3.336742e-01	ci left: 9.128690e-05	ci right 1.285356e-04	k: 137	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
KRAS   1260000 perm   1024 sec   (1230 perm/sec)   p_kst 7.936508e-07   p_cons 1.087302e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 3.324717e-01	ci left: 9.128966e-05	ci right 1.283765e-04	k: 138	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
KRAS   1270000 perm   1037 sec   (1225 perm/sec)   p_kst 7.874016e-07   p_cons 1.086614e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 3.324719e-01	ci left: 9.057646e-05	ci right 1.273735e-04	k: 138	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
KRAS   1280000 perm   1049 sec   (1220 perm/sec)   p_kst 7.812500e-07   p_cons 1.078125e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 3.312824e-01	ci left: 9.058492e-05	ci right 1.272257e-04	k: 139	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
KRAS   1290000 perm   1062 sec   (1215 perm/sec)   p_kst 7.751938e-07   p_cons 1.077519e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 3.312825e-01	ci left: 8.988811e-05	ci right 1.262471e-04	k: 139	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
KRAS   1300000 perm   1074 sec   (1210 perm/sec)   p_kst 7.692308e-07   p_cons 1.069231e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 3.312826e-01	ci left: 8.920194e-05	ci right 1.252833e-04	k: 139	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
KRAS   1310000 perm   1087 sec   (1205 perm/sec)   p_kst 7.633588e-07   p_cons 1.061069e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 3.312828e-01	ci left: 8.852616e-05	ci right 1.243342e-04	k: 139	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
KRAS   1320000 perm   1100 sec   (1200 perm/sec)   p_kst 7.575758e-07   p_cons 1.053030e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 3.301059e-01	ci left: 8.855001e-05	ci right 1.242135e-04	k: 140	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
KRAS   1330000 perm   1115 sec   (1193 perm/sec)   p_kst 7.518797e-07   p_cons 1.052632e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 3.301061e-01	ci left: 8.788918e-05	ci right 1.232865e-04	k: 140	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
KRAS   1340000 perm   1128 sec   (1188 perm/sec)   p_kst 7.462687e-07   p_cons 1.044776e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 3.289417e-01	ci left: 8.791762e-05	ci right 1.231751e-04	k: 141	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
KRAS   1350000 perm   1140 sec   (1184 perm/sec)   p_kst 7.407407e-07   p_cons 1.044444e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 3.266493e-01	ci left: 8.862075e-05	ci right 1.238606e-04	k: 143	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
KRAS   1360000 perm   1154 sec   (1179 perm/sec)   p_kst 7.352941e-07   p_cons 1.051471e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 3.266494e-01	ci left: 8.797388e-05	ci right 1.229565e-04	k: 143	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
KRAS   1370000 perm   1167 sec   (1174 perm/sec)   p_kst 7.299270e-07   p_cons 1.043796e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 3.266495e-01	ci left: 8.733639e-05	ci right 1.220655e-04	k: 143	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
KRAS   1380000 perm   1180 sec   (1169 perm/sec)   p_kst 7.246377e-07   p_cons 1.036232e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 3.255212e-01	ci left: 8.736861e-05	ci right 1.219654e-04	k: 144	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
KRAS   1390000 perm   1193 sec   (1165 perm/sec)   p_kst 7.194245e-07   p_cons 1.035971e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 3.232991e-01	ci left: 8.805680e-05	ci right 1.226387e-04	k: 146	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
KRAS   1400000 perm   1207 sec   (1160 perm/sec)   p_kst 7.142857e-07   p_cons 1.042857e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 3.222050e-01	ci left: 8.808405e-05	ci right 1.225355e-04	k: 147	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
KRAS   1410000 perm   1220 sec   (1155 perm/sec)   p_kst 7.092199e-07   p_cons 1.042553e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 3.200496e-01	ci left: 8.875868e-05	ci right 1.231941e-04	k: 149	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
KRAS   1420000 perm   1234 sec   (1151 perm/sec)   p_kst 7.042254e-07   p_cons 1.049296e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 3.179370e-01	ci left: 8.942463e-05	ci right 1.238428e-04	k: 151	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
KRAS   1430000 perm   1248 sec   (1146 perm/sec)   p_kst 6.993007e-07   p_cons 1.055944e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 3.158656e-01	ci left: 9.008207e-05	ci right 1.244818e-04	k: 153	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
KRAS   1440000 perm   1262 sec   (1141 perm/sec)   p_kst 6.944444e-07   p_cons 1.062500e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 3.158657e-01	ci left: 8.946081e-05	ci right 1.236233e-04	k: 153	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
KRAS   1450000 perm   1276 sec   (1137 perm/sec)   p_kst 6.896552e-07   p_cons 1.055172e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 3.158658e-01	ci left: 8.884806e-05	ci right 1.227766e-04	k: 153	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
KRAS   1460000 perm   1290 sec   (1132 perm/sec)   p_kst 6.849315e-07   p_cons 1.047945e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 3.138344e-01	ci left: 8.949671e-05	ci right 1.234090e-04	k: 155	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
KRAS   1470000 perm   1303 sec   (1128 perm/sec)   p_kst 6.802721e-07   p_cons 1.054422e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 3.138345e-01	ci left: 8.889199e-05	ci right 1.225752e-04	k: 155	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
KRAS   1480000 perm   1317 sec   (1124 perm/sec)   p_kst 6.756757e-07   p_cons 1.047297e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 3.128335e-01	ci left: 8.891377e-05	ci right 1.224763e-04	k: 156	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
KRAS   1490000 perm   1332 sec   (1119 perm/sec)   p_kst 6.711409e-07   p_cons 1.046980e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 3.128336e-01	ci left: 8.832101e-05	ci right 1.216598e-04	k: 156	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
KRAS   1500000 perm   1346 sec   (1115 perm/sec)   p_kst 6.666667e-07   p_cons 1.040000e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 3.098867e-01	ci left: 8.956765e-05	ci right 1.229956e-04	k: 159	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
KRAS   1510000 perm   1360 sec   (1111 perm/sec)   p_kst 6.622517e-07   p_cons 1.052980e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 3.098868e-01	ci left: 8.897839e-05	ci right 1.221864e-04	k: 159	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
KRAS   1520000 perm   1374 sec   (1107 perm/sec)   p_kst 6.578947e-07   p_cons 1.046053e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 3.079679e-01	ci left: 8.960270e-05	ci right 1.227960e-04	k: 161	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
KRAS   1530000 perm   1388 sec   (1102 perm/sec)   p_kst 6.535948e-07   p_cons 1.052288e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 3.060842e-01	ci left: 9.021953e-05	ci right 1.233970e-04	k: 163	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
KRAS   1540000 perm   1402 sec   (1098 perm/sec)   p_kst 6.493506e-07   p_cons 1.058442e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 3.051552e-01	ci left: 9.023317e-05	ci right 1.232954e-04	k: 164	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
KRAS   1550000 perm   1417 sec   (1094 perm/sec)   p_kst 6.451613e-07   p_cons 1.058065e-04   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 3.042347e-01	ci left: 9.024677e-05	ci right 1.231949e-04	k: 165	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
KRAS   1560000 perm   1432 sec   (1089 perm/sec)   p_kst 6.410256e-07   p_cons 1.057692e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 3.033225e-01	ci left: 9.026035e-05	ci right 1.230956e-04	k: 166	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
KRAS   1570000 perm   1447 sec   (1085 perm/sec)   p_kst 6.369427e-07   p_cons 1.057325e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 3.033226e-01	ci left: 8.968908e-05	ci right 1.223165e-04	k: 166	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
KRAS   1580000 perm   1462 sec   (1080 perm/sec)   p_kst 6.329114e-07   p_cons 1.050633e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 3.015223e-01	ci left: 9.028743e-05	ci right 1.229002e-04	k: 168	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
KRAS   1590000 perm   1478 sec   (1076 perm/sec)   p_kst 6.289308e-07   p_cons 1.056604e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 3.015224e-01	ci left: 8.972313e-05	ci right 1.221321e-04	k: 168	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
KRAS   1600000 perm   1493 sec   (1072 perm/sec)   p_kst 6.250000e-07   p_cons 1.050000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 3.006343e-01	ci left: 8.974005e-05	ci right 1.220414e-04	k: 169	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
KRAS   1610000 perm   1508 sec   (1067 perm/sec)   p_kst 6.211180e-07   p_cons 1.049689e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 2.988812e-01	ci left: 9.032784e-05	ci right 1.226152e-04	k: 171	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
KRAS   1620000 perm   1524 sec   (1063 perm/sec)   p_kst 6.172840e-07   p_cons 1.055556e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 2.988813e-01	ci left: 8.977368e-05	ci right 1.218630e-04	k: 171	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
KRAS   1630000 perm   1539 sec   (1059 perm/sec)   p_kst 6.134969e-07   p_cons 1.049080e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 2.980163e-01	ci left: 8.979039e-05	ci right 1.217752e-04	k: 172	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
KRAS   1640000 perm   1554 sec   (1055 perm/sec)   p_kst 6.097561e-07   p_cons 1.048780e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 2.980164e-01	ci left: 8.924620e-05	ci right 1.210372e-04	k: 172	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
KRAS   1650000 perm   1570 sec   (1051 perm/sec)   p_kst 6.060606e-07   p_cons 1.042424e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 2.980165e-01	ci left: 8.870857e-05	ci right 1.203080e-04	k: 172	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
KRAS   1660000 perm   1585 sec   (1047 perm/sec)   p_kst 6.024096e-07   p_cons 1.036145e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 2.971589e-01	ci left: 8.873148e-05	ci right 1.202310e-04	k: 173	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
KRAS   1670000 perm   1601 sec   (1043 perm/sec)   p_kst 5.988024e-07   p_cons 1.035928e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 2.971590e-01	ci left: 8.820331e-05	ci right 1.195153e-04	k: 173	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
KRAS   1680000 perm   1617 sec   (1039 perm/sec)   p_kst 5.952381e-07   p_cons 1.029762e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 2.963087e-01	ci left: 8.822907e-05	ci right 1.194438e-04	k: 174	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
KRAS   1690000 perm   1633 sec   (1035 perm/sec)   p_kst 5.917160e-07   p_cons 1.029586e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 2.963088e-01	ci left: 8.771008e-05	ci right 1.187412e-04	k: 174	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
KRAS   1700000 perm   1649 sec   (1031 perm/sec)   p_kst 5.882353e-07   p_cons 1.023529e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 2.954658e-01	ci left: 8.773855e-05	ci right 1.186749e-04	k: 175	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
KRAS   1710000 perm   1665 sec   (1027 perm/sec)   p_kst 5.847953e-07   p_cons 1.023392e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 2.946300e-01	ci left: 8.776681e-05	ci right 1.186092e-04	k: 176	n:1720000
KS ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
KRAS   1720000 perm   1681 sec   (1023 perm/sec)   p_kst 5.813953e-07   p_cons 1.023256e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 2.946301e-01	ci left: 8.725948e-05	ci right 1.179236e-04	k: 176	n:1730000
KS ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
KRAS   1730000 perm   1698 sec   (1019 perm/sec)   p_kst 5.780347e-07   p_cons 1.017341e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 2.938013e-01	ci left: 8.729029e-05	ci right 1.178629e-04	k: 177	n:1740000
KS ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
KRAS   1740000 perm   1714 sec   (1015 perm/sec)   p_kst 5.747126e-07   p_cons 1.017241e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 2.938014e-01	ci left: 8.679149e-05	ci right 1.171894e-04	k: 177	n:1750000
KS ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
KRAS   1750000 perm   1730 sec   (1012 perm/sec)   p_kst 5.714286e-07   p_cons 1.011429e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 2.929796e-01	ci left: 8.682472e-05	ci right 1.171334e-04	k: 178	n:1760000
KS ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
KRAS   1760000 perm   1746 sec   (1008 perm/sec)   p_kst 5.681818e-07   p_cons 1.011364e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 2.913563e-01	ci left: 8.738134e-05	ci right 1.176842e-04	k: 180	n:1770000
KS ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
KRAS   1770000 perm   1763 sec   (1004 perm/sec)   p_kst 5.649718e-07   p_cons 1.016949e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 2.897598e-01	ci left: 8.793215e-05	ci right 1.182283e-04	k: 182	n:1780000
KS ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
KRAS   1780000 perm   1779 sec   (1001 perm/sec)   p_kst 5.617978e-07   p_cons 1.022472e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 2.897598e-01	ci left: 8.744091e-05	ci right 1.175678e-04	k: 182	n:1790000
KS ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
KRAS   1790000 perm   1795 sec   (997 perm/sec)   p_kst 5.586592e-07   p_cons 1.016760e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 2.897599e-01	ci left: 8.695512e-05	ci right 1.169146e-04	k: 182	n:1800000
KS ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
KRAS   1800000 perm   1812 sec   (993 perm/sec)   p_kst 5.555556e-07   p_cons 1.011111e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 2.881893e-01	ci left: 8.749960e-05	ci right 1.174535e-04	k: 184	n:1810000
KS ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
KRAS   1810000 perm   1828 sec   (990 perm/sec)   p_kst 5.524862e-07   p_cons 1.016575e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 2.881894e-01	ci left: 8.701883e-05	ci right 1.168082e-04	k: 184	n:1820000
KS ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
KRAS   1820000 perm   1845 sec   (987 perm/sec)   p_kst 5.494505e-07   p_cons 1.010989e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 2.881895e-01	ci left: 8.654331e-05	ci right 1.161699e-04	k: 184	n:1830000
KS ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
KRAS   1830000 perm   1861 sec   (983 perm/sec)   p_kst 5.464481e-07   p_cons 1.005464e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 2.881896e-01	ci left: 8.607297e-05	ci right 1.155385e-04	k: 184	n:1840000
KS ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
KRAS   1840000 perm   1878 sec   (980 perm/sec)   p_kst 5.434783e-07   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 2.874138e-01	ci left: 8.610923e-05	ci right 1.154934e-04	k: 185	n:1850000
KS ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
KRAS   1850000 perm   1895 sec   (976 perm/sec)   p_kst 5.405405e-07   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 2.866443e-01	ci left: 8.614522e-05	ci right 1.154487e-04	k: 186	n:1860000
KS ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
KRAS   1860000 perm   1912 sec   (973 perm/sec)   p_kst 5.376344e-07   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 2.851236e-01	ci left: 8.667739e-05	ci right 1.159774e-04	k: 188	n:1870000
KS ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
KRAS   1870000 perm   1930 sec   (969 perm/sec)   p_kst 5.347594e-07   p_cons 1.005348e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 2.836268e-01	ci left: 8.720431e-05	ci right 1.165000e-04	k: 190	n:1880000
KS ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
KRAS   1880000 perm   1947 sec   (966 perm/sec)   p_kst 5.319149e-07   p_cons 1.010638e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 2.814251e-01	ci left: 8.821777e-05	ci right 1.175830e-04	k: 193	n:1890000
KS ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
KRAS   1890000 perm   1964 sec   (962 perm/sec)   p_kst 5.291005e-07   p_cons 1.021164e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 2.814252e-01	ci left: 8.775347e-05	ci right 1.169642e-04	k: 193	n:1900000
KS ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
KRAS   1900000 perm   1982 sec   (959 perm/sec)   p_kst 5.263158e-07   p_cons 1.015789e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 2.799856e-01	ci left: 8.826744e-05	ci right 1.174724e-04	k: 195	n:1910000
KS ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
KRAS   1910000 perm   1999 sec   (955 perm/sec)   p_kst 5.235602e-07   p_cons 1.020942e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 2.792740e-01	ci left: 8.829203e-05	ci right 1.174178e-04	k: 196	n:1920000
KS ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
KRAS   1920000 perm   2017 sec   (952 perm/sec)   p_kst 5.208333e-07   p_cons 1.020833e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 2.771714e-01	ci left: 8.928054e-05	ci right 1.184720e-04	k: 199	n:1930000
KS ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
KRAS   1930000 perm   2034 sec   (949 perm/sec)   p_kst 5.181347e-07   p_cons 1.031088e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 2.771715e-01	ci left: 8.882033e-05	ci right 1.178613e-04	k: 199	n:1940000
KS ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
KRAS   1940000 perm   2052 sec   (946 perm/sec)   p_kst 5.154639e-07   p_cons 1.025773e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 2.764812e-01	ci left: 8.884207e-05	ci right 1.178052e-04	k: 200	n:1950000
KS ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
KRAS   1950000 perm   2069 sec   (942 perm/sec)   p_kst 5.128205e-07   p_cons 1.025641e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 2.764812e-01	ci left: 8.838879e-05	ci right 1.172042e-04	k: 200	n:1960000
KS ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
KRAS   1960000 perm   2088 sec   (939 perm/sec)   p_kst 5.102041e-07   p_cons 1.020408e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 2.764813e-01	ci left: 8.794011e-05	ci right 1.166093e-04	k: 200	n:1970000
KS ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
KRAS   1970000 perm   2106 sec   (936 perm/sec)   p_kst 5.076142e-07   p_cons 1.015228e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 2.757961e-01	ci left: 8.796605e-05	ci right 1.165603e-04	k: 201	n:1980000
KS ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
KRAS   1980000 perm   2123 sec   (932 perm/sec)   p_kst 5.050505e-07   p_cons 1.015152e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 2.744408e-01	ci left: 8.845972e-05	ci right 1.170487e-04	k: 203	n:1990000
KS ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
KRAS   1990000 perm   2141 sec   (929 perm/sec)   p_kst 5.025126e-07   p_cons 1.020101e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 2.731052e-01	ci left: 8.894878e-05	ci right 1.175319e-04	k: 205	n:2000000
KS ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
KRAS   2000000 perm   2160 sec   (926 perm/sec)   p_kst 5.000000e-07   p_cons 1.025000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 2.731053e-01	ci left: 8.850625e-05	ci right 1.169472e-04	k: 205	n:2010000
KS ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
KRAS   2010000 perm   2178 sec   (923 perm/sec)   p_kst 4.975124e-07   p_cons 1.019900e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 2.717890e-01	ci left: 8.899057e-05	ci right 1.174258e-04	k: 207	n:2020000
KS ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
KRAS   2020000 perm   2197 sec   (920 perm/sec)   p_kst 4.950495e-07   p_cons 1.024752e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 2.717891e-01	ci left: 8.855219e-05	ci right 1.168474e-04	k: 207	n:2030000
KS ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
KRAS   2030000 perm   2215 sec   (916 perm/sec)   p_kst 4.926108e-07   p_cons 1.019704e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 2.717892e-01	ci left: 8.811811e-05	ci right 1.162746e-04	k: 207	n:2040000
KS ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
KRAS   2040000 perm   2234 sec   (913 perm/sec)   p_kst 4.901961e-07   p_cons 1.014706e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 2.711382e-01	ci left: 8.814288e-05	ci right 1.162283e-04	k: 208	n:2050000
KS ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
KRAS   2050000 perm   2252 sec   (910 perm/sec)   p_kst 4.878049e-07   p_cons 1.014634e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 2.704918e-01	ci left: 8.816748e-05	ci right 1.161824e-04	k: 209	n:2060000
KS ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
KRAS   2060000 perm   2271 sec   (907 perm/sec)   p_kst 4.854369e-07   p_cons 1.014563e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 2.698501e-01	ci left: 8.819192e-05	ci right 1.161369e-04	k: 210	n:2070000
KS ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
KRAS   2070000 perm   2289 sec   (904 perm/sec)   p_kst 4.830918e-07   p_cons 1.014493e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 2.698502e-01	ci left: 8.776792e-05	ci right 1.155785e-04	k: 210	n:2080000
KS ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
KRAS   2080000 perm   2308 sec   (901 perm/sec)   p_kst 4.807692e-07   p_cons 1.009615e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 2.692130e-01	ci left: 8.779411e-05	ci right 1.155363e-04	k: 211	n:2090000
KS ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
KRAS   2090000 perm   2327 sec   (898 perm/sec)   p_kst 4.784689e-07   p_cons 1.009569e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 2.685803e-01	ci left: 8.782014e-05	ci right 1.154943e-04	k: 212	n:2100000
KS ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
KRAS   2100000 perm   2346 sec   (895 perm/sec)   p_kst 4.761905e-07   p_cons 1.009524e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 2.679520e-01	ci left: 8.784599e-05	ci right 1.154527e-04	k: 213	n:2110000
KS ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
KRAS   2110000 perm   2365 sec   (892 perm/sec)   p_kst 4.739336e-07   p_cons 1.009479e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 2.679521e-01	ci left: 8.743162e-05	ci right 1.149081e-04	k: 213	n:2120000
KS ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
KRAS   2120000 perm   2384 sec   (889 perm/sec)   p_kst 4.716981e-07   p_cons 1.004717e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 2.679522e-01	ci left: 8.702114e-05	ci right 1.143686e-04	k: 213	n:2130000
KS ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
KRAS   2130000 perm   2404 sec   (886 perm/sec)   p_kst 4.694836e-07   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 2.679522e-01	ci left: 8.661450e-05	ci right 1.138342e-04	k: 213	n:2140000
KS ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
KRAS   2140000 perm   2423 sec   (883 perm/sec)   p_kst 4.672897e-07   p_cons 9.953271e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 2.679523e-01	ci left: 8.621164e-05	ci right 1.133047e-04	k: 213	n:2150000
KS ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
KRAS   2150000 perm   2443 sec   (880 perm/sec)   p_kst 4.651163e-07   p_cons 9.906977e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 2.667088e-01	ci left: 8.667639e-05	ci right 1.137680e-04	k: 215	n:2160000
KS ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
KRAS   2160000 perm   2462 sec   (877 perm/sec)   p_kst 4.629630e-07   p_cons 9.953704e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 2.660936e-01	ci left: 8.670701e-05	ci right 1.137353e-04	k: 216	n:2170000
KS ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
KRAS   2170000 perm   2481 sec   (874 perm/sec)   p_kst 4.608295e-07   p_cons 9.953917e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 2.654826e-01	ci left: 8.673743e-05	ci right 1.137027e-04	k: 217	n:2180000
KS ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
KRAS   2180000 perm   2501 sec   (872 perm/sec)   p_kst 4.587156e-07   p_cons 9.954128e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 2.654826e-01	ci left: 8.634137e-05	ci right 1.131836e-04	k: 217	n:2190000
KS ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
KRAS   2190000 perm   2521 sec   (869 perm/sec)   p_kst 4.566210e-07   p_cons 9.908676e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 2.654827e-01	ci left: 8.594890e-05	ci right 1.126691e-04	k: 217	n:2200000
KS ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
KRAS   2200000 perm   2540 sec   (866 perm/sec)   p_kst 4.545455e-07   p_cons 9.863636e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 2.648759e-01	ci left: 8.598240e-05	ci right 1.126418e-04	k: 218	n:2210000
KS ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
KRAS   2210000 perm   2560 sec   (863 perm/sec)   p_kst 4.524887e-07   p_cons 9.864253e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 2.648759e-01	ci left: 8.559509e-05	ci right 1.121344e-04	k: 218	n:2220000
KS ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
KRAS   2220000 perm   2580 sec   (860 perm/sec)   p_kst 4.504505e-07   p_cons 9.819820e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 2.642732e-01	ci left: 8.562995e-05	ci right 1.121096e-04	k: 219	n:2230000
KS ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
KRAS   2230000 perm   2600 sec   (858 perm/sec)   p_kst 4.484305e-07   p_cons 9.820628e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 2.642733e-01	ci left: 8.524767e-05	ci right 1.116091e-04	k: 219	n:2240000
KS ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
KRAS   2240000 perm   2620 sec   (855 perm/sec)   p_kst 4.464286e-07   p_cons 9.776786e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 2.642734e-01	ci left: 8.486879e-05	ci right 1.111131e-04	k: 219	n:2250000
KS ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
KRAS   2250000 perm   2640 sec   (852 perm/sec)   p_kst 4.444444e-07   p_cons 9.733333e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 2.636748e-01	ci left: 8.490647e-05	ci right 1.110932e-04	k: 220	n:2260000
KS ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
KRAS   2260000 perm   2661 sec   (849 perm/sec)   p_kst 4.424779e-07   p_cons 9.734513e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 2.636748e-01	ci left: 8.453243e-05	ci right 1.106038e-04	k: 220	n:2270000
KS ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
KRAS   2270000 perm   2680 sec   (847 perm/sec)   p_kst 4.405286e-07   p_cons 9.691630e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 2.619031e-01	ci left: 8.539080e-05	ci right 1.115209e-04	k: 223	n:2280000
KS ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
KRAS   2280000 perm   2700 sec   (844 perm/sec)   p_kst 4.385965e-07   p_cons 9.780702e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 2.619031e-01	ci left: 8.501791e-05	ci right 1.110339e-04	k: 223	n:2290000
KS ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
KRAS   2290000 perm   2720 sec   (842 perm/sec)   p_kst 4.366812e-07   p_cons 9.737991e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 2.619032e-01	ci left: 8.464826e-05	ci right 1.105512e-04	k: 223	n:2300000
KS ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
KRAS   2300000 perm   2740 sec   (839 perm/sec)   p_kst 4.347826e-07   p_cons 9.695652e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 2.613205e-01	ci left: 8.468633e-05	ci right 1.105338e-04	k: 224	n:2310000
KS ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
KRAS   2310000 perm   2760 sec   (837 perm/sec)   p_kst 4.329004e-07   p_cons 9.696970e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 2.613206e-01	ci left: 8.432130e-05	ci right 1.100574e-04	k: 224	n:2320000
KS ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
KRAS   2320000 perm   2781 sec   (834 perm/sec)   p_kst 4.310345e-07   p_cons 9.655172e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 2.613207e-01	ci left: 8.395941e-05	ci right 1.095850e-04	k: 224	n:2330000
KS ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
KRAS   2330000 perm   2801 sec   (832 perm/sec)   p_kst 4.291845e-07   p_cons 9.613734e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 2.613207e-01	ci left: 8.360061e-05	ci right 1.091167e-04	k: 224	n:2340000
KS ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
KRAS   2340000 perm   2822 sec   (829 perm/sec)   p_kst 4.273504e-07   p_cons 9.572650e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 2.613208e-01	ci left: 8.324486e-05	ci right 1.086524e-04	k: 224	n:2350000
KS ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
KRAS   2350000 perm   2842 sec   (827 perm/sec)   p_kst 4.255319e-07   p_cons 9.531915e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 2.613208e-01	ci left: 8.289212e-05	ci right 1.081920e-04	k: 224	n:2360000
KS ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
KRAS   2360000 perm   2863 sec   (824 perm/sec)   p_kst 4.237288e-07   p_cons 9.491525e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 2.613209e-01	ci left: 8.254236e-05	ci right 1.077355e-04	k: 224	n:2370000
KS ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
KRAS   2370000 perm   2884 sec   (822 perm/sec)   p_kst 4.219409e-07   p_cons 9.451477e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 2.613209e-01	ci left: 8.219555e-05	ci right 1.072828e-04	k: 224	n:2380000
KS ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
KRAS   2380000 perm   2905 sec   (819 perm/sec)   p_kst 4.201681e-07   p_cons 9.411765e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 2.613210e-01	ci left: 8.185163e-05	ci right 1.068340e-04	k: 224	n:2390000
KS ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
KRAS   2390000 perm   2926 sec   (817 perm/sec)   p_kst 4.184100e-07   p_cons 9.372385e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 2.607422e-01	ci left: 8.189999e-05	ci right 1.068327e-04	k: 225	n:2400000
KS ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
KRAS   2400000 perm   2947 sec   (814 perm/sec)   p_kst 4.166667e-07   p_cons 9.375000e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 2.573482e-01	ci left: 8.388816e-05	ci right 1.090403e-04	k: 231	n:2410000
KS ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
KRAS   2410000 perm   2968 sec   (812 perm/sec)   p_kst 4.149378e-07   p_cons 9.585062e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 2.562460e-01	ci left: 8.431477e-05	ci right 1.094692e-04	k: 233	n:2420000
KS ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
KRAS   2420000 perm   2989 sec   (810 perm/sec)   p_kst 4.132231e-07   p_cons 9.628099e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 2.562460e-01	ci left: 8.396779e-05	ci right 1.090188e-04	k: 233	n:2430000
KS ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
KRAS   2430000 perm   3010 sec   (807 perm/sec)   p_kst 4.115226e-07   p_cons 9.588477e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 2.562461e-01	ci left: 8.362366e-05	ci right 1.085720e-04	k: 233	n:2440000
KS ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
KRAS   2440000 perm   3031 sec   (805 perm/sec)   p_kst 4.098361e-07   p_cons 9.549180e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 2.557003e-01	ci left: 8.366432e-05	ci right 1.085631e-04	k: 234	n:2450000
KS ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
KRAS   2450000 perm   3052 sec   (803 perm/sec)   p_kst 4.081633e-07   p_cons 9.551020e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 2.557003e-01	ci left: 8.332422e-05	ci right 1.081218e-04	k: 234	n:2460000
KS ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
KRAS   2460000 perm   3073 sec   (800 perm/sec)   p_kst 4.065041e-07   p_cons 9.512195e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 2.557004e-01	ci left: 8.298687e-05	ci right 1.076841e-04	k: 234	n:2470000
KS ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
KRAS   2470000 perm   3094 sec   (798 perm/sec)   p_kst 4.048583e-07   p_cons 9.473684e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 2.557004e-01	ci left: 8.265225e-05	ci right 1.072498e-04	k: 234	n:2480000
KS ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
KRAS   2480000 perm   3116 sec   (796 perm/sec)   p_kst 4.032258e-07   p_cons 9.435484e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 2.557005e-01	ci left: 8.232031e-05	ci right 1.068191e-04	k: 234	n:2490000
KS ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
KRAS   2490000 perm   3138 sec   (793 perm/sec)   p_kst 4.016064e-07   p_cons 9.397590e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 2.546192e-01	ci left: 8.273987e-05	ci right 1.072429e-04	k: 236	n:2500000
KS ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
KRAS   2500000 perm   3160 sec   (791 perm/sec)   p_kst 4.000000e-07   p_cons 9.440000e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 2.540838e-01	ci left: 8.278324e-05	ci right 1.072394e-04	k: 237	n:2510000
KS ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
KRAS   2510000 perm   3181 sec   (789 perm/sec)   p_kst 3.984064e-07   p_cons 9.442231e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 2.540838e-01	ci left: 8.245473e-05	ci right 1.068138e-04	k: 237	n:2520000
KS ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
KRAS   2520000 perm   3204 sec   (787 perm/sec)   p_kst 3.968254e-07   p_cons 9.404762e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 2.540839e-01	ci left: 8.212882e-05	ci right 1.063916e-04	k: 237	n:2530000
KS ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
KRAS   2530000 perm   3226 sec   (784 perm/sec)   p_kst 3.952569e-07   p_cons 9.367589e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 2.540839e-01	ci left: 8.180548e-05	ci right 1.059728e-04	k: 237	n:2540000
KS ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
KRAS   2540000 perm   3248 sec   (782 perm/sec)   p_kst 3.937008e-07   p_cons 9.330709e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 2.540840e-01	ci left: 8.148467e-05	ci right 1.055572e-04	k: 237	n:2550000
KS ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
KRAS   2550000 perm   3271 sec   (780 perm/sec)   p_kst 3.921569e-07   p_cons 9.294118e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 2.535518e-01	ci left: 8.153215e-05	ci right 1.055603e-04	k: 238	n:2560000
KS ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
KRAS   2560000 perm   3293 sec   (777 perm/sec)   p_kst 3.906250e-07   p_cons 9.296875e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 2.535519e-01	ci left: 8.121490e-05	ci right 1.051496e-04	k: 238	n:2570000
KS ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
KRAS   2570000 perm   3316 sec   (775 perm/sec)   p_kst 3.891051e-07   p_cons 9.260700e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 2.530231e-01	ci left: 8.126311e-05	ci right 1.051542e-04	k: 239	n:2580000
KS ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
KRAS   2580000 perm   3338 sec   (773 perm/sec)   p_kst 3.875969e-07   p_cons 9.263566e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 2.530231e-01	ci left: 8.094935e-05	ci right 1.047482e-04	k: 239	n:2590000
KS ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
KRAS   2590000 perm   3361 sec   (771 perm/sec)   p_kst 3.861004e-07   p_cons 9.227799e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 2.524976e-01	ci left: 8.099826e-05	ci right 1.047542e-04	k: 240	n:2600000
KS ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
KRAS   2600000 perm   3384 sec   (768 perm/sec)   p_kst 3.846154e-07   p_cons 9.230769e-05   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 2.524977e-01	ci left: 8.068792e-05	ci right 1.043528e-04	k: 240	n:2610000
KS ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
KRAS   2610000 perm   3407 sec   (766 perm/sec)   p_kst 3.831418e-07   p_cons 9.195402e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 2.519755e-01	ci left: 8.073751e-05	ci right 1.043603e-04	k: 241	n:2620000
KS ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
KRAS   2620000 perm   3429 sec   (764 perm/sec)   p_kst 3.816794e-07   p_cons 9.198473e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 2.519755e-01	ci left: 8.043052e-05	ci right 1.039635e-04	k: 241	n:2630000
KS ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
KRAS   2630000 perm   3452 sec   (762 perm/sec)   p_kst 3.802281e-07   p_cons 9.163498e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 2.636766e-01	ci left: 7.268502e-05	ci right 9.510256e-05	k: 220	n:2640000
KS ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
KRAS   2640000 perm   3475 sec   (760 perm/sec)   p_kst 3.787879e-07   p_cons 8.333333e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 2.636767e-01	ci left: 7.241073e-05	ci right 9.474369e-05	k: 220	n:2650000
KS ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
KRAS   2650000 perm   3499 sec   (757 perm/sec)   p_kst 3.773585e-07   p_cons 8.301887e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 2.636767e-01	ci left: 7.213851e-05	ci right 9.438751e-05	k: 220	n:2660000
KS ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
KRAS   2660000 perm   3522 sec   (755 perm/sec)   p_kst 3.759398e-07   p_cons 8.270677e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 2.636768e-01	ci left: 7.186833e-05	ci right 9.403400e-05	k: 220	n:2670000
KS ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
KRAS   2670000 perm   3546 sec   (753 perm/sec)   p_kst 3.745318e-07   p_cons 8.239700e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 2.636768e-01	ci left: 7.160016e-05	ci right 9.368313e-05	k: 220	n:2680000
KS ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
KRAS   2680000 perm   3569 sec   (751 perm/sec)   p_kst 3.731343e-07   p_cons 8.208955e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 2.630823e-01	ci left: 7.168120e-05	ci right 9.373110e-05	k: 221	n:2690000
KS ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
KRAS   2690000 perm   3592 sec   (749 perm/sec)   p_kst 3.717472e-07   p_cons 8.215613e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 2.630823e-01	ci left: 7.141571e-05	ci right 9.338395e-05	k: 221	n:2700000
KS ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
KRAS   2700000 perm   3616 sec   (747 perm/sec)   p_kst 3.703704e-07   p_cons 8.185185e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 2.624918e-01	ci left: 7.149688e-05	ci right 9.343262e-05	k: 222	n:2710000
KS ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
KRAS   2710000 perm   3640 sec   (745 perm/sec)   p_kst 3.690037e-07   p_cons 8.191882e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 2.624918e-01	ci left: 7.123402e-05	ci right 9.308912e-05	k: 222	n:2720000
KS ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
KRAS   2720000 perm   3664 sec   (742 perm/sec)   p_kst 3.676471e-07   p_cons 8.161765e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 2.624918e-01	ci left: 7.097309e-05	ci right 9.274813e-05	k: 222	n:2730000
KS ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
KRAS   2730000 perm   3688 sec   (740 perm/sec)   p_kst 3.663004e-07   p_cons 8.131868e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 2.619053e-01	ci left: 7.105504e-05	ci right 9.279853e-05	k: 223	n:2740000
KS ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
KRAS   2740000 perm   3712 sec   (738 perm/sec)   p_kst 3.649635e-07   p_cons 8.138686e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 2.619053e-01	ci left: 7.079666e-05	ci right 9.246108e-05	k: 223	n:2750000
KS ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
KRAS   2750000 perm   3736 sec   (736 perm/sec)   p_kst 3.636364e-07   p_cons 8.109091e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 2.613226e-01	ci left: 7.087871e-05	ci right 9.251210e-05	k: 224	n:2760000
KS ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
KRAS   2760000 perm   3760 sec   (734 perm/sec)   p_kst 3.623188e-07   p_cons 8.115942e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 2.601688e-01	ci left: 7.129767e-05	ci right 9.294723e-05	k: 226	n:2770000
KS ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
KRAS   2770000 perm   3784 sec   (732 perm/sec)   p_kst 3.610108e-07   p_cons 8.158845e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 2.584664e-01	ci left: 7.205020e-05	ci right 9.376200e-05	k: 229	n:2780000
KS ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
KRAS   2780000 perm   3808 sec   (730 perm/sec)   p_kst 3.597122e-07   p_cons 8.237410e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 2.584664e-01	ci left: 7.179196e-05	ci right 9.342594e-05	k: 229	n:2790000
KS ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
KRAS   2790000 perm   3832 sec   (728 perm/sec)   p_kst 3.584229e-07   p_cons 8.207885e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 2.584665e-01	ci left: 7.153556e-05	ci right 9.309228e-05	k: 229	n:2800000
KS ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
KRAS   2800000 perm   3857 sec   (726 perm/sec)   p_kst 3.571429e-07   p_cons 8.178571e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 2.573499e-01	ci left: 7.194672e-05	ci right 9.351864e-05	k: 231	n:2810000
KS ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
KRAS   2810000 perm   3881 sec   (724 perm/sec)   p_kst 3.558719e-07   p_cons 8.220641e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 2.573500e-01	ci left: 7.169159e-05	ci right 9.318701e-05	k: 231	n:2820000
KS ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
KRAS   2820000 perm   3906 sec   (722 perm/sec)   p_kst 3.546099e-07   p_cons 8.191489e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 2.567971e-01	ci left: 7.176885e-05	ci right 9.323381e-05	k: 232	n:2830000
KS ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
KRAS   2830000 perm   3930 sec   (720 perm/sec)   p_kst 3.533569e-07   p_cons 8.197880e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 2.557020e-01	ci left: 7.217515e-05	ci right 9.365487e-05	k: 234	n:2840000
KS ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
KRAS   2840000 perm   3955 sec   (718 perm/sec)   p_kst 3.521127e-07   p_cons 8.239437e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 2.557020e-01	ci left: 7.192190e-05	ci right 9.332626e-05	k: 234	n:2850000
KS ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
KRAS   2850000 perm   3980 sec   (716 perm/sec)   p_kst 3.508772e-07   p_cons 8.210526e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 2.535531e-01	ci left: 7.297978e-05	ci right 9.448760e-05	k: 238	n:2860000
KS ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
KRAS   2860000 perm   4004 sec   (714 perm/sec)   p_kst 3.496503e-07   p_cons 8.321678e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 2.519765e-01	ci left: 7.370459e-05	ci right 9.526974e-05	k: 241	n:2870000
KS ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
KRAS   2870000 perm   4029 sec   (712 perm/sec)   p_kst 3.484321e-07   p_cons 8.397213e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 2.519765e-01	ci left: 7.344867e-05	ci right 9.493895e-05	k: 241	n:2880000
KS ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
KRAS   2880000 perm   4054 sec   (710 perm/sec)   p_kst 3.472222e-07   p_cons 8.368056e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 2.509416e-01	ci left: 7.384295e-05	ci right 9.534600e-05	k: 243	n:2890000
KS ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
KRAS   2890000 perm   4079 sec   (708 perm/sec)   p_kst 3.460208e-07   p_cons 8.408304e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 2.509417e-01	ci left: 7.358832e-05	ci right 9.501722e-05	k: 243	n:2900000
KS ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
KRAS   2900000 perm   4105 sec   (706 perm/sec)   p_kst 3.448276e-07   p_cons 8.379310e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 2.504290e-01	ci left: 7.365750e-05	ci right 9.505589e-05	k: 244	n:2910000
KS ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
KRAS   2910000 perm   4130 sec   (705 perm/sec)   p_kst 3.436426e-07   p_cons 8.384880e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 2.504291e-01	ci left: 7.340524e-05	ci right 9.473036e-05	k: 244	n:2920000
KS ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
KRAS   2920000 perm   4154 sec   (703 perm/sec)   p_kst 3.424658e-07   p_cons 8.356164e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 2.499195e-01	ci left: 7.347461e-05	ci right 9.476969e-05	k: 245	n:2930000
KS ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
KRAS   2930000 perm   4179 sec   (701 perm/sec)   p_kst 3.412969e-07   p_cons 8.361775e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 2.499196e-01	ci left: 7.322470e-05	ci right 9.444735e-05	k: 245	n:2940000
KS ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
KRAS   2940000 perm   4205 sec   (699 perm/sec)   p_kst 3.401361e-07   p_cons 8.333333e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 2.499196e-01	ci left: 7.297648e-05	ci right 9.412719e-05	k: 245	n:2950000
KS ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
KRAS   2950000 perm   4230 sec   (697 perm/sec)   p_kst 3.389831e-07   p_cons 8.305085e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 2.499196e-01	ci left: 7.272993e-05	ci right 9.380920e-05	k: 245	n:2960000
KS ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
KRAS   2960000 perm   4255 sec   (696 perm/sec)   p_kst 3.378378e-07   p_cons 8.277027e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 2.489098e-01	ci left: 7.311637e-05	ci right 9.420874e-05	k: 247	n:2970000
KS ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
KRAS   2970000 perm   4281 sec   (694 perm/sec)   p_kst 3.367003e-07   p_cons 8.316498e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 2.489098e-01	ci left: 7.287101e-05	ci right 9.389261e-05	k: 247	n:2980000
KS ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
KRAS   2980000 perm   4306 sec   (692 perm/sec)   p_kst 3.355705e-07   p_cons 8.288591e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 2.484095e-01	ci left: 7.294090e-05	ci right 9.393383e-05	k: 248	n:2990000
KS ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
KRAS   2990000 perm   4332 sec   (690 perm/sec)   p_kst 3.344482e-07   p_cons 8.294314e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 2.484096e-01	ci left: 7.269777e-05	ci right 9.362072e-05	k: 248	n:3000000
KS ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
KRAS   3000000 perm   4357 sec   (688 perm/sec)   p_kst 3.333333e-07   p_cons 8.266667e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 2.474178e-01	ci left: 7.307942e-05	ci right 9.401533e-05	k: 250	n:3010000
KS ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
KRAS   3010000 perm   4383 sec   (687 perm/sec)   p_kst 3.322259e-07   p_cons 8.305648e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 2.474179e-01	ci left: 7.283743e-05	ci right 9.370403e-05	k: 250	n:3020000
KS ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
KRAS   3020000 perm   4409 sec   (685 perm/sec)   p_kst 3.311258e-07   p_cons 8.278146e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 2.474179e-01	ci left: 7.259705e-05	ci right 9.339477e-05	k: 250	n:3030000
KS ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
KRAS   3030000 perm   4435 sec   (683 perm/sec)   p_kst 3.300330e-07   p_cons 8.250825e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 2.464380e-01	ci left: 7.297543e-05	ci right 9.378607e-05	k: 252	n:3040000
KS ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
KRAS   3040000 perm   4461 sec   (682 perm/sec)   p_kst 3.289474e-07   p_cons 8.289474e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 2.459524e-01	ci left: 7.304381e-05	ci right 9.382663e-05	k: 253	n:3050000
KS ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
KRAS   3050000 perm   4486 sec   (680 perm/sec)   p_kst 3.278689e-07   p_cons 8.295082e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 2.459524e-01	ci left: 7.280510e-05	ci right 9.352001e-05	k: 253	n:3060000
KS ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
KRAS   3060000 perm   4512 sec   (678 perm/sec)   p_kst 3.267974e-07   p_cons 8.267974e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 2.449897e-01	ci left: 7.317935e-05	ci right 9.390684e-05	k: 255	n:3070000
KS ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
KRAS   3070000 perm   4538 sec   (676 perm/sec)   p_kst 3.257329e-07   p_cons 8.306189e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 2.430978e-01	ci left: 7.416105e-05	ci right 9.497991e-05	k: 259	n:3080000
KS ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
KRAS   3080000 perm   4565 sec   (675 perm/sec)   p_kst 3.246753e-07   p_cons 8.409091e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 2.426316e-01	ci left: 7.422498e-05	ci right 9.501581e-05	k: 260	n:3090000
KS ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
KRAS   3090000 perm   4591 sec   (673 perm/sec)   p_kst 3.236246e-07   p_cons 8.414239e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 2.421681e-01	ci left: 7.428853e-05	ci right 9.505144e-05	k: 261	n:3100000
KS ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
KRAS   3100000 perm   4618 sec   (671 perm/sec)   p_kst 3.225806e-07   p_cons 8.419355e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 2.417073e-01	ci left: 7.435171e-05	ci right 9.508681e-05	k: 262	n:3110000
KS ci ratio: 2.771857e+00	ci left: 8.140774e-09	ci right 1.791524e-06	k: 1	n:3110000
KRAS   3110000 perm   4645 sec   (670 perm/sec)   p_kst 3.215434e-07   p_cons 8.424437e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 2.417073e-01	ci left: 7.411340e-05	ci right 9.478204e-05	k: 262	n:3120000
KS ci ratio: 2.771857e+00	ci left: 8.114682e-09	ci right 1.785782e-06	k: 1	n:3120000
KRAS   3120000 perm   4672 sec   (668 perm/sec)   p_kst 3.205128e-07   p_cons 8.397436e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 2.412491e-01	ci left: 7.417678e-05	ci right 9.481801e-05	k: 263	n:3130000
KS ci ratio: 2.771857e+00	ci left: 8.088757e-09	ci right 1.780076e-06	k: 1	n:3130000
KRAS   3130000 perm   4698 sec   (666 perm/sec)   p_kst 3.194888e-07   p_cons 8.402556e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 2.412491e-01	ci left: 7.394055e-05	ci right 9.451604e-05	k: 263	n:3140000
KS ci ratio: 2.771857e+00	ci left: 8.062996e-09	ci right 1.774407e-06	k: 1	n:3140000
KRAS   3140000 perm   4726 sec   (664 perm/sec)   p_kst 3.184713e-07   p_cons 8.375796e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 2.398899e-01	ci left: 7.460080e-05	ci right 9.522566e-05	k: 266	n:3150000
KS ci ratio: 2.771857e+00	ci left: 8.037399e-09	ci right 1.768774e-06	k: 1	n:3150000
KRAS   3150000 perm   4753 sec   (663 perm/sec)   p_kst 3.174603e-07   p_cons 8.444444e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 2.398899e-01	ci left: 7.436472e-05	ci right 9.492432e-05	k: 266	n:3160000
KS ci ratio: 2.771857e+00	ci left: 8.011965e-09	ci right 1.763177e-06	k: 1	n:3160000
KRAS   3160000 perm   4780 sec   (661 perm/sec)   p_kst 3.164557e-07   p_cons 8.417722e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 2.394420e-01	ci left: 7.442664e-05	ci right 9.495924e-05	k: 267	n:3170000
KS ci ratio: 2.771857e+00	ci left: 7.986690e-09	ci right 1.757615e-06	k: 1	n:3170000
KRAS   3170000 perm   4807 sec   (659 perm/sec)   p_kst 3.154574e-07   p_cons 8.422713e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 2.385534e-01	ci left: 7.478387e-05	ci right 9.532714e-05	k: 269	n:3180000
KS ci ratio: 2.771857e+00	ci left: 7.961575e-09	ci right 1.752088e-06	k: 1	n:3180000
KRAS   3180000 perm   4834 sec   (658 perm/sec)   p_kst 3.144654e-07   p_cons 8.459119e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 2.385535e-01	ci left: 7.454944e-05	ci right 9.502831e-05	k: 269	n:3190000
KS ci ratio: 2.771857e+00	ci left: 7.936617e-09	ci right 1.746595e-06	k: 1	n:3190000
KRAS   3190000 perm   4862 sec   (656 perm/sec)   p_kst 3.134796e-07   p_cons 8.432602e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 2.385535e-01	ci left: 7.431647e-05	ci right 9.473135e-05	k: 269	n:3200000
KS ci ratio: 2.771857e+00	ci left: 7.911815e-09	ci right 1.741137e-06	k: 1	n:3200000
KRAS   3200000 perm   4889 sec   (655 perm/sec)   p_kst 3.125000e-07   p_cons 8.406250e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 2.381130e-01	ci left: 7.437788e-05	ci right 9.476633e-05	k: 270	n:3210000
KS ci ratio: 2.771857e+00	ci left: 7.887168e-09	ci right 1.735713e-06	k: 1	n:3210000
KRAS   3210000 perm   4916 sec   (653 perm/sec)   p_kst 3.115265e-07   p_cons 8.411215e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 2.376748e-01	ci left: 7.443894e-05	ci right 9.480106e-05	k: 271	n:3220000
KS ci ratio: 2.771857e+00	ci left: 7.862673e-09	ci right 1.730323e-06	k: 1	n:3220000
KRAS   3220000 perm   4944 sec   (651 perm/sec)   p_kst 3.105590e-07   p_cons 8.416149e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 2.376749e-01	ci left: 7.420848e-05	ci right 9.450756e-05	k: 271	n:3230000
KS ci ratio: 2.771857e+00	ci left: 7.838331e-09	ci right 1.724966e-06	k: 1	n:3230000
KRAS   3230000 perm   4971 sec   (650 perm/sec)   p_kst 3.095975e-07   p_cons 8.390093e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 2.372392e-01	ci left: 7.426972e-05	ci right 9.454284e-05	k: 272	n:3240000
KS ci ratio: 2.771857e+00	ci left: 7.814138e-09	ci right 1.719642e-06	k: 1	n:3240000
KRAS   3240000 perm   4998 sec   (648 perm/sec)   p_kst 3.086420e-07   p_cons 8.395062e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 2.372392e-01	ci left: 7.404120e-05	ci right 9.425194e-05	k: 272	n:3250000
KS ci ratio: 2.771857e+00	ci left: 7.790095e-09	ci right 1.714351e-06	k: 1	n:3250000
KRAS   3250000 perm   5026 sec   (647 perm/sec)   p_kst 3.076923e-07   p_cons 8.369231e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 2.372392e-01	ci left: 7.381408e-05	ci right 9.396283e-05	k: 272	n:3260000
KS ci ratio: 2.771857e+00	ci left: 7.766199e-09	ci right 1.709092e-06	k: 1	n:3260000
KRAS   3260000 perm   5054 sec   (645 perm/sec)   p_kst 3.067485e-07   p_cons 8.343558e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 2.368059e-01	ci left: 7.387600e-05	ci right 9.399941e-05	k: 273	n:3270000
KS ci ratio: 2.771857e+00	ci left: 7.742449e-09	ci right 1.703865e-06	k: 1	n:3270000
KRAS   3270000 perm   5082 sec   (644 perm/sec)   p_kst 3.058104e-07   p_cons 8.348624e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 2.368059e-01	ci left: 7.365076e-05	ci right 9.371283e-05	k: 273	n:3280000
KS ci ratio: 2.771857e+00	ci left: 7.718844e-09	ci right 1.698671e-06	k: 1	n:3280000
KRAS   3280000 perm   5109 sec   (642 perm/sec)   p_kst 3.048780e-07   p_cons 8.323171e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 2.363750e-01	ci left: 7.371284e-05	ci right 9.374993e-05	k: 274	n:3290000
KS ci ratio: 2.771857e+00	ci left: 7.695382e-09	ci right 1.693507e-06	k: 1	n:3290000
KRAS   3290000 perm   5137 sec   (640 perm/sec)   p_kst 3.039514e-07   p_cons 8.328267e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 2.359464e-01	ci left: 7.377457e-05	ci right 9.378676e-05	k: 275	n:3300000
KS ci ratio: 2.771857e+00	ci left: 7.672063e-09	ci right 1.688376e-06	k: 1	n:3300000
KRAS   3300000 perm   5165 sec   (639 perm/sec)   p_kst 3.030303e-07   p_cons 8.333333e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 2.355201e-01	ci left: 7.383596e-05	ci right 9.382334e-05	k: 276	n:3310000
KS ci ratio: 2.771857e+00	ci left: 7.648885e-09	ci right 1.683275e-06	k: 1	n:3310000
KRAS   3310000 perm   5193 sec   (637 perm/sec)   p_kst 3.021148e-07   p_cons 8.338369e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 2.355201e-01	ci left: 7.361356e-05	ci right 9.354074e-05	k: 276	n:3320000
KS ci ratio: 2.771857e+00	ci left: 7.625846e-09	ci right 1.678205e-06	k: 1	n:3320000
KRAS   3320000 perm   5221 sec   (636 perm/sec)   p_kst 3.012048e-07   p_cons 8.313253e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 2.346744e-01	ci left: 7.395772e-05	ci right 9.389575e-05	k: 278	n:3330000
KS ci ratio: 2.771857e+00	ci left: 7.602945e-09	ci right 1.673165e-06	k: 1	n:3330000
KRAS   3330000 perm   5249 sec   (634 perm/sec)   p_kst 3.003003e-07   p_cons 8.348348e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 2.346744e-01	ci left: 7.373629e-05	ci right 9.361463e-05	k: 278	n:3340000
KS ci ratio: 2.771857e+00	ci left: 7.580182e-09	ci right 1.668156e-06	k: 1	n:3340000
KRAS   3340000 perm   5277 sec   (633 perm/sec)   p_kst 2.994012e-07   p_cons 8.323353e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 2.346745e-01	ci left: 7.351618e-05	ci right 9.333518e-05	k: 278	n:3350000
KS ci ratio: 2.771857e+00	ci left: 7.557555e-09	ci right 1.663176e-06	k: 1	n:3350000
KRAS   3350000 perm   5305 sec   (631 perm/sec)   p_kst 2.985075e-07   p_cons 8.298507e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 2.346745e-01	ci left: 7.329738e-05	ci right 9.305740e-05	k: 278	n:3360000
KS ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
KRAS   3360000 perm   5334 sec   (630 perm/sec)   p_kst 2.976190e-07   p_cons 8.273810e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 2.346745e-01	ci left: 7.307988e-05	ci right 9.278127e-05	k: 278	n:3370000
KS ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
KRAS   3370000 perm   5362 sec   (628 perm/sec)   p_kst 2.967359e-07   p_cons 8.249258e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 2.346745e-01	ci left: 7.286367e-05	ci right 9.250677e-05	k: 278	n:3380000
KS ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
KRAS   3380000 perm   5390 sec   (627 perm/sec)   p_kst 2.958580e-07   p_cons 8.224852e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 2.342551e-01	ci left: 7.292639e-05	ci right 9.254617e-05	k: 279	n:3390000
KS ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
KRAS   3390000 perm   5419 sec   (626 perm/sec)   p_kst 2.949853e-07   p_cons 8.230088e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 2.342551e-01	ci left: 7.271190e-05	ci right 9.227397e-05	k: 279	n:3400000
KS ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
KRAS   3400000 perm   5447 sec   (624 perm/sec)   p_kst 2.941176e-07   p_cons 8.205882e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 2.334229e-01	ci left: 7.305082e-05	ci right 9.262418e-05	k: 281	n:3410000
KS ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
KRAS   3410000 perm   5477 sec   (623 perm/sec)   p_kst 2.932551e-07   p_cons 8.240469e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 2.334229e-01	ci left: 7.283722e-05	ci right 9.235335e-05	k: 281	n:3420000
KS ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
KRAS   3420000 perm   5506 sec   (621 perm/sec)   p_kst 2.923977e-07   p_cons 8.216374e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 2.334230e-01	ci left: 7.262487e-05	ci right 9.208410e-05	k: 281	n:3430000
KS ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
KRAS   3430000 perm   5534 sec   (620 perm/sec)   p_kst 2.915452e-07   p_cons 8.192420e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 2.334230e-01	ci left: 7.241375e-05	ci right 9.181642e-05	k: 281	n:3440000
KS ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
KRAS   3440000 perm   5563 sec   (618 perm/sec)   p_kst 2.906977e-07   p_cons 8.168605e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 2.325996e-01	ci left: 7.274973e-05	ci right 9.216377e-05	k: 283	n:3450000
KS ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
KRAS   3450000 perm   5592 sec   (617 perm/sec)   p_kst 2.898551e-07   p_cons 8.202899e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 2.321912e-01	ci left: 7.281166e-05	ci right 9.220321e-05	k: 284	n:3460000
KS ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
KRAS   3460000 perm   5621 sec   (616 perm/sec)   p_kst 2.890173e-07   p_cons 8.208092e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 2.317849e-01	ci left: 7.287326e-05	ci right 9.224240e-05	k: 285	n:3470000
KS ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
KRAS   3470000 perm   5651 sec   (614 perm/sec)   p_kst 2.881844e-07   p_cons 8.213256e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 2.309786e-01	ci left: 7.320526e-05	ci right 9.258530e-05	k: 287	n:3480000
KS ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
KRAS   3480000 perm   5680 sec   (613 perm/sec)   p_kst 2.873563e-07   p_cons 8.247126e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 2.301807e-01	ci left: 7.353547e-05	ci right 9.292612e-05	k: 289	n:3490000
KS ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
KRAS   3490000 perm   5709 sec   (611 perm/sec)   p_kst 2.865330e-07   p_cons 8.280802e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 2.297849e-01	ci left: 7.359462e-05	ci right 9.296277e-05	k: 290	n:3500000
KS ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
KRAS   3500000 perm   5739 sec   (610 perm/sec)   p_kst 2.857143e-07   p_cons 8.285714e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 2.297849e-01	ci left: 7.338495e-05	ci right 9.269792e-05	k: 290	n:3510000
KS ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
KRAS   3510000 perm   5768 sec   (609 perm/sec)   p_kst 2.849003e-07   p_cons 8.262108e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 2.297849e-01	ci left: 7.317647e-05	ci right 9.243457e-05	k: 290	n:3520000
KS ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
KRAS   3520000 perm   5798 sec   (607 perm/sec)   p_kst 2.840909e-07   p_cons 8.238636e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 2.293911e-01	ci left: 7.323617e-05	ci right 9.247227e-05	k: 291	n:3530000
KS ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
KRAS   3530000 perm   5828 sec   (606 perm/sec)   p_kst 2.832861e-07   p_cons 8.243626e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 2.289993e-01	ci left: 7.329555e-05	ci right 9.250972e-05	k: 292	n:3540000
KS ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
KRAS   3540000 perm   5858 sec   (604 perm/sec)   p_kst 2.824859e-07   p_cons 8.248588e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 2.286095e-01	ci left: 7.335463e-05	ci right 9.254694e-05	k: 293	n:3550000
KS ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
KRAS   3550000 perm   5888 sec   (603 perm/sec)   p_kst 2.816901e-07   p_cons 8.253521e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 2.282217e-01	ci left: 7.341341e-05	ci right 9.258392e-05	k: 294	n:3560000
KS ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
KRAS   3560000 perm   5918 sec   (602 perm/sec)   p_kst 2.808989e-07   p_cons 8.258427e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 2.282218e-01	ci left: 7.320776e-05	ci right 9.232458e-05	k: 294	n:3570000
KS ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
KRAS   3570000 perm   5948 sec   (600 perm/sec)   p_kst 2.801120e-07   p_cons 8.235294e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 2.282218e-01	ci left: 7.300327e-05	ci right 9.206669e-05	k: 294	n:3580000
KS ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
KRAS   3580000 perm   5978 sec   (599 perm/sec)   p_kst 2.793296e-07   p_cons 8.212291e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 2.274520e-01	ci left: 7.332523e-05	ci right 9.239908e-05	k: 296	n:3590000
KS ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
KRAS   3590000 perm   6008 sec   (598 perm/sec)   p_kst 2.785515e-07   p_cons 8.245125e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 2.270701e-01	ci left: 7.338352e-05	ci right 9.243598e-05	k: 297	n:3600000
KS ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
KRAS   3600000 perm   6038 sec   (596 perm/sec)   p_kst 2.777778e-07   p_cons 8.250000e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 2.266900e-01	ci left: 7.344150e-05	ci right 9.247265e-05	k: 298	n:3610000
KS ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
KRAS   3610000 perm   6070 sec   (595 perm/sec)   p_kst 2.770083e-07   p_cons 8.254848e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 2.266901e-01	ci left: 7.323862e-05	ci right 9.221720e-05	k: 298	n:3620000
KS ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
KRAS   3620000 perm   6099 sec   (594 perm/sec)   p_kst 2.762431e-07   p_cons 8.232044e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 2.266901e-01	ci left: 7.303686e-05	ci right 9.196316e-05	k: 298	n:3630000
KS ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
KRAS   3630000 perm   6129 sec   (592 perm/sec)   p_kst 2.754821e-07   p_cons 8.209366e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 2.255613e-01	ci left: 7.361371e-05	ci right 9.258130e-05	k: 301	n:3640000
KS ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
KRAS   3640000 perm   6160 sec   (591 perm/sec)   p_kst 2.747253e-07   p_cons 8.269231e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 2.251887e-01	ci left: 7.367054e-05	ci right 9.261706e-05	k: 302	n:3650000
KS ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
KRAS   3650000 perm   6191 sec   (590 perm/sec)   p_kst 2.739726e-07   p_cons 8.273973e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 2.248181e-01	ci left: 7.372708e-05	ci right 9.265261e-05	k: 303	n:3660000
KS ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
KRAS   3660000 perm   6222 sec   (588 perm/sec)   p_kst 2.732240e-07   p_cons 8.278689e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 2.240821e-01	ci left: 7.404051e-05	ci right 9.297569e-05	k: 305	n:3670000
KS ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
KRAS   3670000 perm   6252 sec   (587 perm/sec)   p_kst 2.724796e-07   p_cons 8.310627e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 2.237169e-01	ci left: 7.409581e-05	ci right 9.300999e-05	k: 306	n:3680000
KS ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
KRAS   3680000 perm   6282 sec   (586 perm/sec)   p_kst 2.717391e-07   p_cons 8.315217e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 2.233534e-01	ci left: 7.415084e-05	ci right 9.304409e-05	k: 307	n:3690000
KS ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
KRAS   3690000 perm   6313 sec   (585 perm/sec)   p_kst 2.710027e-07   p_cons 8.319783e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 2.233534e-01	ci left: 7.395043e-05	ci right 9.279262e-05	k: 307	n:3700000
KS ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
KRAS   3700000 perm   6343 sec   (583 perm/sec)   p_kst 2.702703e-07   p_cons 8.297297e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 2.229917e-01	ci left: 7.400558e-05	ci right 9.282709e-05	k: 308	n:3710000
KS ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
KRAS   3710000 perm   6375 sec   (582 perm/sec)   p_kst 2.695418e-07   p_cons 8.301887e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 2.229917e-01	ci left: 7.380664e-05	ci right 9.257755e-05	k: 308	n:3720000
KS ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
KRAS   3720000 perm   6406 sec   (581 perm/sec)   p_kst 2.688172e-07   p_cons 8.279570e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 2.229917e-01	ci left: 7.360876e-05	ci right 9.232936e-05	k: 308	n:3730000
KS ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
KRAS   3730000 perm   6437 sec   (579 perm/sec)   p_kst 2.680965e-07   p_cons 8.257373e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 2.229918e-01	ci left: 7.341195e-05	ci right 9.208249e-05	k: 308	n:3740000
KS ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
KRAS   3740000 perm   6468 sec   (578 perm/sec)   p_kst 2.673797e-07   p_cons 8.235294e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 2.229918e-01	ci left: 7.321618e-05	ci right 9.183694e-05	k: 308	n:3750000
KS ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
KRAS   3750000 perm   6500 sec   (577 perm/sec)   p_kst 2.666667e-07   p_cons 8.213333e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 2.229918e-01	ci left: 7.302146e-05	ci right 9.159269e-05	k: 308	n:3760000
KS ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
KRAS   3760000 perm   6531 sec   (576 perm/sec)   p_kst 2.659574e-07   p_cons 8.191489e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 2.222736e-01	ci left: 7.332869e-05	ci right 9.190978e-05	k: 310	n:3770000
KS ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
KRAS   3770000 perm   6562 sec   (574 perm/sec)   p_kst 2.652520e-07   p_cons 8.222812e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 2.219171e-01	ci left: 7.338453e-05	ci right 9.194587e-05	k: 311	n:3780000
KS ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
KRAS   3780000 perm   6595 sec   (573 perm/sec)   p_kst 2.645503e-07   p_cons 8.227513e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 2.219171e-01	ci left: 7.319091e-05	ci right 9.170327e-05	k: 311	n:3790000
KS ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
KRAS   3790000 perm   6627 sec   (572 perm/sec)   p_kst 2.638522e-07   p_cons 8.205805e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 2.219172e-01	ci left: 7.299830e-05	ci right 9.146195e-05	k: 311	n:3800000
KS ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
KRAS   3800000 perm   6659 sec   (571 perm/sec)   p_kst 2.631579e-07   p_cons 8.184211e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 2.219172e-01	ci left: 7.280670e-05	ci right 9.122189e-05	k: 311	n:3810000
KS ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
KRAS   3810000 perm   6690 sec   (569 perm/sec)   p_kst 2.624672e-07   p_cons 8.162730e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 2.212093e-01	ci left: 7.311061e-05	ci right 9.153566e-05	k: 313	n:3820000
KS ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
KRAS   3820000 perm   6722 sec   (568 perm/sec)   p_kst 2.617801e-07   p_cons 8.193717e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 2.212093e-01	ci left: 7.291972e-05	ci right 9.129666e-05	k: 313	n:3830000
KS ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
KRAS   3830000 perm   6754 sec   (567 perm/sec)   p_kst 2.610966e-07   p_cons 8.172324e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 2.208579e-01	ci left: 7.297583e-05	ci right 9.133372e-05	k: 314	n:3840000
KS ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
KRAS   3840000 perm   6786 sec   (566 perm/sec)   p_kst 2.604167e-07   p_cons 8.177083e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 2.208579e-01	ci left: 7.278628e-05	ci right 9.109649e-05	k: 314	n:3850000
KS ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
KRAS   3850000 perm   6817 sec   (565 perm/sec)   p_kst 2.597403e-07   p_cons 8.155844e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 2.205082e-01	ci left: 7.284246e-05	ci right 9.113385e-05	k: 315	n:3860000
KS ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
KRAS   3860000 perm   6850 sec   (564 perm/sec)   p_kst 2.590674e-07   p_cons 8.160622e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 2.205082e-01	ci left: 7.265424e-05	ci right 9.089837e-05	k: 315	n:3870000
KS ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
KRAS   3870000 perm   6881 sec   (562 perm/sec)   p_kst 2.583979e-07   p_cons 8.139535e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 2.205082e-01	ci left: 7.246698e-05	ci right 9.066409e-05	k: 315	n:3880000
KS ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
KRAS   3880000 perm   6914 sec   (561 perm/sec)   p_kst 2.577320e-07   p_cons 8.118557e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 2.201601e-01	ci left: 7.252358e-05	ci right 9.070226e-05	k: 316	n:3890000
KS ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
KRAS   3890000 perm   6947 sec   (560 perm/sec)   p_kst 2.570694e-07   p_cons 8.123393e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 2.198137e-01	ci left: 7.257990e-05	ci right 9.074020e-05	k: 317	n:3900000
KS ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
KRAS   3900000 perm   6980 sec   (559 perm/sec)   p_kst 2.564103e-07   p_cons 8.128205e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 2.191257e-01	ci left: 7.287767e-05	ci right 9.104771e-05	k: 319	n:3910000
KS ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
KRAS   3910000 perm   7013 sec   (558 perm/sec)   p_kst 2.557545e-07   p_cons 8.158568e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 2.184441e-01	ci left: 7.317401e-05	ci right 9.135356e-05	k: 321	n:3920000
KS ci ratio: 2.771858e+00	ci left: 6.458624e-09	ci right 1.421337e-06	k: 1	n:3920000
KRAS   3920000 perm   7046 sec   (556 perm/sec)   p_kst 2.551020e-07   p_cons 8.188776e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 2.184441e-01	ci left: 7.298781e-05	ci right 9.112111e-05	k: 321	n:3930000
KS ci ratio: 2.771858e+00	ci left: 6.442190e-09	ci right 1.417720e-06	k: 1	n:3930000
KRAS   3930000 perm   7079 sec   (555 perm/sec)   p_kst 2.544529e-07   p_cons 8.167939e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 2.184441e-01	ci left: 7.280256e-05	ci right 9.088984e-05	k: 321	n:3940000
KS ci ratio: 2.771858e+00	ci left: 6.425839e-09	ci right 1.414122e-06	k: 1	n:3940000
KRAS   3940000 perm   7111 sec   (554 perm/sec)   p_kst 2.538071e-07   p_cons 8.147208e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 2.177688e-01	ci left: 7.309693e-05	ci right 9.119368e-05	k: 323	n:3950000
KS ci ratio: 2.771858e+00	ci left: 6.409572e-09	ci right 1.410542e-06	k: 1	n:3950000
KRAS   3950000 perm   7143 sec   (553 perm/sec)   p_kst 2.531646e-07   p_cons 8.177215e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 2.174335e-01	ci left: 7.315110e-05	ci right 9.122966e-05	k: 324	n:3960000
KS ci ratio: 2.771858e+00	ci left: 6.393386e-09	ci right 1.406980e-06	k: 1	n:3960000
KRAS   3960000 perm   7177 sec   (552 perm/sec)   p_kst 2.525253e-07   p_cons 8.181818e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 2.170998e-01	ci left: 7.320502e-05	ci right 9.126544e-05	k: 325	n:3970000
KS ci ratio: 2.771858e+00	ci left: 6.377281e-09	ci right 1.403436e-06	k: 1	n:3970000
KRAS   3970000 perm   7210 sec   (551 perm/sec)   p_kst 2.518892e-07   p_cons 8.186398e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 2.161076e-01	ci left: 7.373397e-05	ci right 9.183072e-05	k: 328	n:3980000
KS ci ratio: 2.771858e+00	ci left: 6.361258e-09	ci right 1.399910e-06	k: 1	n:3980000
KRAS   3980000 perm   7242 sec   (550 perm/sec)   p_kst 2.512563e-07   p_cons 8.241206e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 2.161077e-01	ci left: 7.354918e-05	ci right 9.160057e-05	k: 328	n:3990000
KS ci ratio: 2.771858e+00	ci left: 6.345315e-09	ci right 1.396401e-06	k: 1	n:3990000
KRAS   3990000 perm   7275 sec   (548 perm/sec)   p_kst 2.506266e-07   p_cons 8.220551e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 2.161077e-01	ci left: 7.336530e-05	ci right 9.137157e-05	k: 328	n:4000000
KS ci ratio: 2.771858e+00	ci left: 6.329452e-09	ci right 1.392910e-06	k: 1	n:4000000
KRAS   4000000 perm   7307 sec   (547 perm/sec)   p_kst 2.500000e-07   p_cons 8.200000e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 2.161077e-01	ci left: 7.318235e-05	ci right 9.114371e-05	k: 328	n:4010000
KS ci ratio: 2.771858e+00	ci left: 6.313668e-09	ci right 1.389436e-06	k: 1	n:4010000
KRAS   4010000 perm   7340 sec   (546 perm/sec)   p_kst 2.493766e-07   p_cons 8.179551e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 2.151290e-01	ci left: 7.370627e-05	ci right 9.170349e-05	k: 331	n:4020000
KS ci ratio: 2.771858e+00	ci left: 6.297962e-09	ci right 1.385980e-06	k: 1	n:4020000
KRAS   4020000 perm   7373 sec   (545 perm/sec)   p_kst 2.487562e-07   p_cons 8.233831e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 2.148058e-01	ci left: 7.375816e-05	ci right 9.173742e-05	k: 332	n:4030000
KS ci ratio: 2.771858e+00	ci left: 6.282334e-09	ci right 1.382541e-06	k: 1	n:4030000
KRAS   4030000 perm   7407 sec   (544 perm/sec)   p_kst 2.481390e-07   p_cons 8.238213e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 2.144840e-01	ci left: 7.380981e-05	ci right 9.177115e-05	k: 333	n:4040000
KS ci ratio: 2.771858e+00	ci left: 6.266784e-09	ci right 1.379119e-06	k: 1	n:4040000
KRAS   4040000 perm   7441 sec   (543 perm/sec)   p_kst 2.475248e-07   p_cons 8.242574e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 2.144840e-01	ci left: 7.362756e-05	ci right 9.154456e-05	k: 333	n:4050000
KS ci ratio: 2.771858e+00	ci left: 6.251311e-09	ci right 1.375714e-06	k: 1	n:4050000
KRAS   4050000 perm   7474 sec   (542 perm/sec)   p_kst 2.469136e-07   p_cons 8.222222e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 2.144840e-01	ci left: 7.344621e-05	ci right 9.131908e-05	k: 333	n:4060000
KS ci ratio: 2.771858e+00	ci left: 6.235913e-09	ci right 1.372325e-06	k: 1	n:4060000
KRAS   4060000 perm   7507 sec   (541 perm/sec)   p_kst 2.463054e-07   p_cons 8.201970e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 2.141636e-01	ci left: 7.349827e-05	ci right 9.135358e-05	k: 334	n:4070000
KS ci ratio: 2.771858e+00	ci left: 6.220592e-09	ci right 1.368953e-06	k: 1	n:4070000
KRAS   4070000 perm   7540 sec   (540 perm/sec)   p_kst 2.457002e-07   p_cons 8.206388e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 2.141637e-01	ci left: 7.331812e-05	ci right 9.112967e-05	k: 334	n:4080000
KS ci ratio: 2.771858e+00	ci left: 6.205345e-09	ci right 1.365598e-06	k: 1	n:4080000
KRAS   4080000 perm   7574 sec   (539 perm/sec)   p_kst 2.450980e-07   p_cons 8.186275e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 2.141637e-01	ci left: 7.313886e-05	ci right 9.090686e-05	k: 334	n:4090000
KS ci ratio: 2.771858e+00	ci left: 6.190173e-09	ci right 1.362259e-06	k: 1	n:4090000
KRAS   4090000 perm   7607 sec   (538 perm/sec)   p_kst 2.444988e-07   p_cons 8.166259e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 2.138447e-01	ci left: 7.319130e-05	ci right 9.094209e-05	k: 335	n:4100000
KS ci ratio: 2.771858e+00	ci left: 6.175075e-09	ci right 1.358937e-06	k: 1	n:4100000
KRAS   4100000 perm   7641 sec   (537 perm/sec)   p_kst 2.439024e-07   p_cons 8.170732e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 2.135272e-01	ci left: 7.324351e-05	ci right 9.097713e-05	k: 336	n:4110000
KS ci ratio: 2.771858e+00	ci left: 6.160051e-09	ci right 1.355630e-06	k: 1	n:4110000
KRAS   4110000 perm   7675 sec   (536 perm/sec)   p_kst 2.433090e-07   p_cons 8.175182e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 2.135272e-01	ci left: 7.306574e-05	ci right 9.075632e-05	k: 336	n:4120000
KS ci ratio: 2.771858e+00	ci left: 6.145099e-09	ci right 1.352340e-06	k: 1	n:4120000
KRAS   4120000 perm   7709 sec   (534 perm/sec)   p_kst 2.427184e-07   p_cons 8.155340e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 2.132111e-01	ci left: 7.311801e-05	ci right 9.079162e-05	k: 337	n:4130000
KS ci ratio: 2.771858e+00	ci left: 6.130220e-09	ci right 1.349065e-06	k: 1	n:4130000
KRAS   4130000 perm   7744 sec   (533 perm/sec)   p_kst 2.421308e-07   p_cons 8.159806e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 2.132112e-01	ci left: 7.294140e-05	ci right 9.057231e-05	k: 337	n:4140000
KS ci ratio: 2.771858e+00	ci left: 6.115413e-09	ci right 1.345807e-06	k: 1	n:4140000
KRAS   4140000 perm   7779 sec   (532 perm/sec)   p_kst 2.415459e-07   p_cons 8.140097e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 2.125831e-01	ci left: 7.322187e-05	ci right 9.086165e-05	k: 339	n:4150000
KS ci ratio: 2.771858e+00	ci left: 6.100677e-09	ci right 1.342564e-06	k: 1	n:4150000
KRAS   4150000 perm   7813 sec   (531 perm/sec)   p_kst 2.409639e-07   p_cons 8.168675e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 2.116514e-01	ci left: 7.372871e-05	ci right 9.140264e-05	k: 342	n:4160000
KS ci ratio: 2.771858e+00	ci left: 6.086011e-09	ci right 1.339337e-06	k: 1	n:4160000
KRAS   4160000 perm   7847 sec   (530 perm/sec)   p_kst 2.403846e-07   p_cons 8.221154e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 2.113435e-01	ci left: 7.377901e-05	ci right 9.143594e-05	k: 343	n:4170000
KS ci ratio: 2.771858e+00	ci left: 6.071417e-09	ci right 1.336125e-06	k: 1	n:4170000
KRAS   4170000 perm   7882 sec   (529 perm/sec)   p_kst 2.398082e-07   p_cons 8.225420e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 2.107318e-01	ci left: 7.405569e-05	ci right 9.172091e-05	k: 345	n:4180000
KS ci ratio: 2.771858e+00	ci left: 6.056892e-09	ci right 1.332928e-06	k: 1	n:4180000
KRAS   4180000 perm   7917 sec   (528 perm/sec)   p_kst 2.392344e-07   p_cons 8.253589e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 2.104279e-01	ci left: 7.410502e-05	ci right 9.175323e-05	k: 346	n:4190000
KS ci ratio: 2.771858e+00	ci left: 6.042436e-09	ci right 1.329747e-06	k: 1	n:4190000
KRAS   4190000 perm   7951 sec   (527 perm/sec)   p_kst 2.386635e-07   p_cons 8.257757e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 2.101253e-01	ci left: 7.415414e-05	ci right 9.178539e-05	k: 347	n:4200000
KS ci ratio: 2.771858e+00	ci left: 6.028049e-09	ci right 1.326581e-06	k: 1	n:4200000
KRAS   4200000 perm   7984 sec   (526 perm/sec)   p_kst 2.380952e-07   p_cons 8.261905e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 2.098241e-01	ci left: 7.420304e-05	ci right 9.181737e-05	k: 348	n:4210000
KS ci ratio: 2.771858e+00	ci left: 6.013731e-09	ci right 1.323430e-06	k: 1	n:4210000
KRAS   4210000 perm   8018 sec   (525 perm/sec)   p_kst 2.375297e-07   p_cons 8.266033e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 2.095241e-01	ci left: 7.425173e-05	ci right 9.184919e-05	k: 349	n:4220000
KS ci ratio: 2.771858e+00	ci left: 5.999481e-09	ci right 1.320294e-06	k: 1	n:4220000
KRAS   4220000 perm   8052 sec   (524 perm/sec)   p_kst 2.369668e-07   p_cons 8.270142e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 2.095241e-01	ci left: 7.407619e-05	ci right 9.163205e-05	k: 349	n:4230000
KS ci ratio: 2.771858e+00	ci left: 5.985298e-09	ci right 1.317173e-06	k: 1	n:4230000
KRAS   4230000 perm   8087 sec   (523 perm/sec)   p_kst 2.364066e-07   p_cons 8.250591e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 2.092254e-01	ci left: 7.412497e-05	ci right 9.166413e-05	k: 350	n:4240000
KS ci ratio: 2.771858e+00	ci left: 5.971181e-09	ci right 1.314066e-06	k: 1	n:4240000
KRAS   4240000 perm   8121 sec   (522 perm/sec)   p_kst 2.358491e-07   p_cons 8.254717e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 2.086319e-01	ci left: 7.439652e-05	ci right 9.194363e-05	k: 352	n:4250000
KS ci ratio: 2.771858e+00	ci left: 5.957131e-09	ci right 1.310974e-06	k: 1	n:4250000
KRAS   4250000 perm   8156 sec   (521 perm/sec)   p_kst 2.352941e-07   p_cons 8.282353e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 2.077509e-01	ci left: 7.488940e-05	ci right 9.246868e-05	k: 355	n:4260000
KS ci ratio: 2.771858e+00	ci left: 5.943147e-09	ci right 1.307897e-06	k: 1	n:4260000
KRAS   4260000 perm   8192 sec   (520 perm/sec)   p_kst 2.347418e-07   p_cons 8.333333e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 2.077509e-01	ci left: 7.471401e-05	ci right 9.225213e-05	k: 355	n:4270000
KS ci ratio: 2.771858e+00	ci left: 5.929229e-09	ci right 1.304834e-06	k: 1	n:4270000
KRAS   4270000 perm   8226 sec   (519 perm/sec)   p_kst 2.341920e-07   p_cons 8.313817e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 2.077509e-01	ci left: 7.453945e-05	ci right 9.203659e-05	k: 355	n:4280000
KS ci ratio: 2.771858e+00	ci left: 5.915376e-09	ci right 1.301785e-06	k: 1	n:4280000
KRAS   4280000 perm   8261 sec   (518 perm/sec)   p_kst 2.336449e-07   p_cons 8.294393e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 2.077509e-01	ci left: 7.436570e-05	ci right 9.182205e-05	k: 355	n:4290000
KS ci ratio: 2.771858e+00	ci left: 5.901587e-09	ci right 1.298751e-06	k: 1	n:4290000
KRAS   4290000 perm   8298 sec   (517 perm/sec)   p_kst 2.331002e-07   p_cons 8.275058e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 2.074598e-01	ci left: 7.441322e-05	ci right 9.185314e-05	k: 356	n:4300000
KS ci ratio: 2.771858e+00	ci left: 5.887862e-09	ci right 1.295730e-06	k: 1	n:4300000
KRAS   4300000 perm   8333 sec   (516 perm/sec)   p_kst 2.325581e-07   p_cons 8.279070e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 2.071698e-01	ci left: 7.446054e-05	ci right 9.188407e-05	k: 357	n:4310000
KS ci ratio: 2.771858e+00	ci left: 5.874201e-09	ci right 1.292724e-06	k: 1	n:4310000
KRAS   4310000 perm   8368 sec   (515 perm/sec)   p_kst 2.320186e-07   p_cons 8.283063e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 2.071698e-01	ci left: 7.428818e-05	ci right 9.167138e-05	k: 357	n:4320000
KS ci ratio: 2.771858e+00	ci left: 5.860604e-09	ci right 1.289732e-06	k: 1	n:4320000
KRAS   4320000 perm   8405 sec   (514 perm/sec)   p_kst 2.314815e-07   p_cons 8.263889e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 2.071698e-01	ci left: 7.411661e-05	ci right 9.145967e-05	k: 357	n:4330000
KS ci ratio: 2.771858e+00	ci left: 5.847069e-09	ci right 1.286753e-06	k: 1	n:4330000
KRAS   4330000 perm   8440 sec   (513 perm/sec)   p_kst 2.309469e-07   p_cons 8.244804e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 2.071699e-01	ci left: 7.394584e-05	ci right 9.124893e-05	k: 357	n:4340000
KS ci ratio: 2.771858e+00	ci left: 5.833596e-09	ci right 1.283788e-06	k: 1	n:4340000
KRAS   4340000 perm   8474 sec   (512 perm/sec)   p_kst 2.304147e-07   p_cons 8.225806e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 2.068811e-01	ci left: 7.399381e-05	ci right 9.128095e-05	k: 358	n:4350000
KS ci ratio: 2.771858e+00	ci left: 5.820186e-09	ci right 1.280837e-06	k: 1	n:4350000
KRAS   4350000 perm   8509 sec   (511 perm/sec)   p_kst 2.298851e-07   p_cons 8.229885e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 2.068811e-01	ci left: 7.382410e-05	ci right 9.107159e-05	k: 358	n:4360000
KS ci ratio: 2.771858e+00	ci left: 5.806837e-09	ci right 1.277899e-06	k: 1	n:4360000
KRAS   4360000 perm   8546 sec   (510 perm/sec)   p_kst 2.293578e-07   p_cons 8.211009e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 2.063072e-01	ci left: 7.408916e-05	ci right 9.134450e-05	k: 360	n:4370000
KS ci ratio: 2.771858e+00	ci left: 5.793549e-09	ci right 1.274975e-06	k: 1	n:4370000
KRAS   4370000 perm   8580 sec   (509 perm/sec)   p_kst 2.288330e-07   p_cons 8.237986e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 2.060221e-01	ci left: 7.413653e-05	ci right 9.137603e-05	k: 361	n:4380000
KS ci ratio: 2.771858e+00	ci left: 5.780321e-09	ci right 1.272064e-06	k: 1	n:4380000
KRAS   4380000 perm   8614 sec   (508 perm/sec)   p_kst 2.283105e-07   p_cons 8.242009e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 2.051736e-01	ci left: 7.461585e-05	ci right 9.188638e-05	k: 364	n:4390000
KS ci ratio: 2.771858e+00	ci left: 5.767154e-09	ci right 1.269166e-06	k: 1	n:4390000
KRAS   4390000 perm   8651 sec   (507 perm/sec)   p_kst 2.277904e-07   p_cons 8.291572e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 2.046138e-01	ci left: 7.487749e-05	ci right 9.215538e-05	k: 366	n:4400000
KS ci ratio: 2.771858e+00	ci left: 5.754047e-09	ci right 1.266282e-06	k: 1	n:4400000
KRAS   4400000 perm   8687 sec   (506 perm/sec)   p_kst 2.272727e-07   p_cons 8.318182e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 2.046138e-01	ci left: 7.470770e-05	ci right 9.194641e-05	k: 366	n:4410000
KS ci ratio: 2.771858e+00	ci left: 5.741000e-09	ci right 1.263411e-06	k: 1	n:4410000
KRAS   4410000 perm   8723 sec   (506 perm/sec)   p_kst 2.267574e-07   p_cons 8.299320e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 2.043356e-01	ci left: 7.475334e-05	ci right 9.197620e-05	k: 367	n:4420000
KS ci ratio: 2.771858e+00	ci left: 5.728011e-09	ci right 1.260552e-06	k: 1	n:4420000
KRAS   4420000 perm   8760 sec   (505 perm/sec)   p_kst 2.262443e-07   p_cons 8.303167e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 2.040585e-01	ci left: 7.479879e-05	ci right 9.200584e-05	k: 368	n:4430000
KS ci ratio: 2.771858e+00	ci left: 5.715081e-09	ci right 1.257707e-06	k: 1	n:4430000
KRAS   4430000 perm   8795 sec   (504 perm/sec)   p_kst 2.257336e-07   p_cons 8.306998e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 2.035077e-01	ci left: 7.505779e-05	ci right 9.227202e-05	k: 370	n:4440000
KS ci ratio: 2.771858e+00	ci left: 5.702209e-09	ci right 1.254874e-06	k: 1	n:4440000
KRAS   4440000 perm   8831 sec   (503 perm/sec)   p_kst 2.252252e-07   p_cons 8.333333e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 2.032340e-01	ci left: 7.510240e-05	ci right 9.230082e-05	k: 371	n:4450000
KS ci ratio: 2.771858e+00	ci left: 5.689395e-09	ci right 1.252054e-06	k: 1	n:4450000
KRAS   4450000 perm   8867 sec   (502 perm/sec)   p_kst 2.247191e-07   p_cons 8.337079e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 2.021500e-01	ci left: 7.578535e-05	ci right 9.303618e-05	k: 375	n:4460000
KS ci ratio: 2.771858e+00	ci left: 5.676638e-09	ci right 1.249247e-06	k: 1	n:4460000
KRAS   4460000 perm   8904 sec   (501 perm/sec)   p_kst 2.242152e-07   p_cons 8.408072e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 2.016145e-01	ci left: 7.604062e-05	ci right 9.329806e-05	k: 377	n:4470000
KS ci ratio: 2.771858e+00	ci left: 5.663939e-09	ci right 1.246452e-06	k: 1	n:4470000
KRAS   4470000 perm   8939 sec   (500 perm/sec)   p_kst 2.237136e-07   p_cons 8.434004e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 2.016145e-01	ci left: 7.587089e-05	ci right 9.308980e-05	k: 377	n:4480000
KS ci ratio: 2.771858e+00	ci left: 5.651297e-09	ci right 1.243670e-06	k: 1	n:4480000
KRAS   4480000 perm   8975 sec   (499 perm/sec)   p_kst 2.232143e-07   p_cons 8.415179e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 2.013484e-01	ci left: 7.591339e-05	ci right 9.311642e-05	k: 378	n:4490000
KS ci ratio: 2.771858e+00	ci left: 5.638710e-09	ci right 1.240900e-06	k: 1	n:4490000
KRAS   4490000 perm   9012 sec   (498 perm/sec)   p_kst 2.227171e-07   p_cons 8.418708e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 2.010832e-01	ci left: 7.595572e-05	ci right 9.314289e-05	k: 379	n:4500000
KS ci ratio: 2.771858e+00	ci left: 5.626179e-09	ci right 1.238142e-06	k: 1	n:4500000
KRAS   4500000 perm   9049 sec   (497 perm/sec)   p_kst 2.222222e-07   p_cons 8.422222e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 2.008192e-01	ci left: 7.599788e-05	ci right 9.316924e-05	k: 380	n:4510000
KS ci ratio: 2.771858e+00	ci left: 5.613705e-09	ci right 1.235397e-06	k: 1	n:4510000
KRAS   4510000 perm   9085 sec   (496 perm/sec)   p_kst 2.217295e-07   p_cons 8.425721e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 2.005562e-01	ci left: 7.603986e-05	ci right 9.319545e-05	k: 381	n:4520000
KS ci ratio: 2.771858e+00	ci left: 5.601285e-09	ci right 1.232664e-06	k: 1	n:4520000
KRAS   4520000 perm   9124 sec   (495 perm/sec)   p_kst 2.212389e-07   p_cons 8.429204e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 2.005562e-01	ci left: 7.587201e-05	ci right 9.298972e-05	k: 381	n:4530000
KS ci ratio: 2.771858e+00	ci left: 5.588920e-09	ci right 1.229943e-06	k: 1	n:4530000
KRAS   4530000 perm   9160 sec   (495 perm/sec)   p_kst 2.207506e-07   p_cons 8.410596e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 2.005562e-01	ci left: 7.570489e-05	ci right 9.278490e-05	k: 381	n:4540000
KS ci ratio: 2.771858e+00	ci left: 5.576610e-09	ci right 1.227234e-06	k: 1	n:4540000
KRAS   4540000 perm   9197 sec   (494 perm/sec)   p_kst 2.202643e-07   p_cons 8.392070e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 2.002942e-01	ci left: 7.574725e-05	ci right 9.281177e-05	k: 382	n:4550000
KS ci ratio: 2.771858e+00	ci left: 5.564354e-09	ci right 1.224536e-06	k: 1	n:4550000
KRAS   4550000 perm   9234 sec   (493 perm/sec)   p_kst 2.197802e-07   p_cons 8.395604e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 1.997732e-01	ci left: 7.599777e-05	ci right 9.306877e-05	k: 384	n:4560000
KS ci ratio: 2.771858e+00	ci left: 5.552151e-09	ci right 1.221851e-06	k: 1	n:4560000
KRAS   4560000 perm   9271 sec   (492 perm/sec)   p_kst 2.192982e-07   p_cons 8.421053e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 1.997733e-01	ci left: 7.583147e-05	ci right 9.286512e-05	k: 384	n:4570000
KS ci ratio: 2.771858e+00	ci left: 5.540002e-09	ci right 1.219177e-06	k: 1	n:4570000
KRAS   4570000 perm   9309 sec   (491 perm/sec)   p_kst 2.188184e-07   p_cons 8.402626e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 1.997733e-01	ci left: 7.566590e-05	ci right 9.266236e-05	k: 384	n:4580000
KS ci ratio: 2.771858e+00	ci left: 5.527906e-09	ci right 1.216515e-06	k: 1	n:4580000
KRAS   4580000 perm   9348 sec   (490 perm/sec)   p_kst 2.183406e-07   p_cons 8.384279e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 1.997733e-01	ci left: 7.550105e-05	ci right 9.246048e-05	k: 384	n:4590000
KS ci ratio: 2.771858e+00	ci left: 5.515862e-09	ci right 1.213865e-06	k: 1	n:4590000
KRAS   4590000 perm   9386 sec   (489 perm/sec)   p_kst 2.178649e-07   p_cons 8.366013e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 1.997733e-01	ci left: 7.533692e-05	ci right 9.225948e-05	k: 384	n:4600000
KS ci ratio: 2.771858e+00	ci left: 5.503871e-09	ci right 1.211226e-06	k: 1	n:4600000
KRAS   4600000 perm   9423 sec   (488 perm/sec)   p_kst 2.173913e-07   p_cons 8.347826e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 1.995144e-01	ci left: 7.537957e-05	ci right 9.228710e-05	k: 385	n:4610000
KS ci ratio: 2.771858e+00	ci left: 5.491932e-09	ci right 1.208599e-06	k: 1	n:4610000
KRAS   4610000 perm   9468 sec   (487 perm/sec)   p_kst 2.169197e-07   p_cons 8.351410e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 1.989995e-01	ci left: 7.562772e-05	ci right 9.254182e-05	k: 387	n:4620000
KS ci ratio: 2.771858e+00	ci left: 5.480045e-09	ci right 1.205983e-06	k: 1	n:4620000
KRAS   4620000 perm   9506 sec   (486 perm/sec)   p_kst 2.164502e-07   p_cons 8.376623e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 1.989995e-01	ci left: 7.546438e-05	ci right 9.234194e-05	k: 387	n:4630000
KS ci ratio: 2.771858e+00	ci left: 5.468209e-09	ci right 1.203378e-06	k: 1	n:4630000
KRAS   4630000 perm   9545 sec   (485 perm/sec)   p_kst 2.159827e-07   p_cons 8.358531e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 1.987435e-01	ci left: 7.550652e-05	ci right 9.236916e-05	k: 388	n:4640000
KS ci ratio: 2.771858e+00	ci left: 5.456424e-09	ci right 1.200785e-06	k: 1	n:4640000
KRAS   4640000 perm   9583 sec   (484 perm/sec)   p_kst 2.155172e-07   p_cons 8.362069e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 1.987436e-01	ci left: 7.534414e-05	ci right 9.217052e-05	k: 388	n:4650000
KS ci ratio: 2.771858e+00	ci left: 5.444690e-09	ci right 1.198202e-06	k: 1	n:4650000
KRAS   4650000 perm   9623 sec   (483 perm/sec)   p_kst 2.150538e-07   p_cons 8.344086e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 1.982346e-01	ci left: 7.559032e-05	ci right 9.242322e-05	k: 390	n:4660000
KS ci ratio: 2.771858e+00	ci left: 5.433006e-09	ci right 1.195631e-06	k: 1	n:4660000
KRAS   4660000 perm   9662 sec   (482 perm/sec)   p_kst 2.145923e-07   p_cons 8.369099e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 1.982346e-01	ci left: 7.542845e-05	ci right 9.222531e-05	k: 390	n:4670000
KS ci ratio: 2.771858e+00	ci left: 5.421372e-09	ci right 1.193071e-06	k: 1	n:4670000
KRAS   4670000 perm   9702 sec   (481 perm/sec)   p_kst 2.141328e-07   p_cons 8.351178e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 1.982346e-01	ci left: 7.526728e-05	ci right 9.202825e-05	k: 390	n:4680000
KS ci ratio: 2.771858e+00	ci left: 5.409788e-09	ci right 1.190522e-06	k: 1	n:4680000
KRAS   4680000 perm   9740 sec   (480 perm/sec)   p_kst 2.136752e-07   p_cons 8.333333e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 1.979816e-01	ci left: 7.530944e-05	ci right 9.205581e-05	k: 391	n:4690000
KS ci ratio: 2.771858e+00	ci left: 5.398253e-09	ci right 1.187983e-06	k: 1	n:4690000
KRAS   4690000 perm   9779 sec   (480 perm/sec)   p_kst 2.132196e-07   p_cons 8.336887e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 1.979816e-01	ci left: 7.514921e-05	ci right 9.185994e-05	k: 391	n:4700000
KS ci ratio: 2.771858e+00	ci left: 5.386768e-09	ci right 1.185455e-06	k: 1	n:4700000
KRAS   4700000 perm   9820 sec   (479 perm/sec)   p_kst 2.127660e-07   p_cons 8.319149e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 1.974785e-01	ci left: 7.539326e-05	ci right 9.211053e-05	k: 393	n:4710000
KS ci ratio: 2.771858e+00	ci left: 5.375331e-09	ci right 1.182939e-06	k: 1	n:4710000
KRAS   4710000 perm   9860 sec   (478 perm/sec)   p_kst 2.123142e-07   p_cons 8.343949e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 1.969791e-01	ci left: 7.563634e-05	ci right 9.236001e-05	k: 395	n:4720000
KS ci ratio: 2.771858e+00	ci left: 5.363942e-09	ci right 1.180432e-06	k: 1	n:4720000
KRAS   4720000 perm   9901 sec   (477 perm/sec)   p_kst 2.118644e-07   p_cons 8.368644e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 1.967309e-01	ci left: 7.567743e-05	ci right 9.238657e-05	k: 396	n:4730000
KS ci ratio: 2.771858e+00	ci left: 5.352602e-09	ci right 1.177937e-06	k: 1	n:4730000
KRAS   4730000 perm   9942 sec   (476 perm/sec)   p_kst 2.114165e-07   p_cons 8.372093e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 1.964836e-01	ci left: 7.571836e-05	ci right 9.241300e-05	k: 397	n:4740000
KS ci ratio: 2.771858e+00	ci left: 5.341310e-09	ci right 1.175452e-06	k: 1	n:4740000
KRAS   4740000 perm   9984 sec   (475 perm/sec)   p_kst 2.109705e-07   p_cons 8.375527e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 1.959917e-01	ci left: 7.595932e-05	ci right 9.266016e-05	k: 399	n:4750000
KS ci ratio: 2.771858e+00	ci left: 5.330065e-09	ci right 1.172977e-06	k: 1	n:4750000
KRAS   4750000 perm   10026 sec   (474 perm/sec)   p_kst 2.105263e-07   p_cons 8.400000e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 1.957472e-01	ci left: 7.599952e-05	ci right 9.268587e-05	k: 400	n:4760000
KS ci ratio: 2.771858e+00	ci left: 5.318867e-09	ci right 1.170513e-06	k: 1	n:4760000
KRAS   4760000 perm   10070 sec   (473 perm/sec)   p_kst 2.100840e-07   p_cons 8.403361e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 1.952608e-01	ci left: 7.623896e-05	ci right 9.293134e-05	k: 402	n:4770000
KS ci ratio: 2.771858e+00	ci left: 5.307716e-09	ci right 1.168059e-06	k: 1	n:4770000
KRAS   4770000 perm   10114 sec   (472 perm/sec)   p_kst 2.096436e-07   p_cons 8.427673e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 1.950190e-01	ci left: 7.627845e-05	ci right 9.295634e-05	k: 403	n:4780000
KS ci ratio: 2.771858e+00	ci left: 5.296612e-09	ci right 1.165615e-06	k: 1	n:4780000
KRAS   4780000 perm   10159 sec   (471 perm/sec)   p_kst 2.092050e-07   p_cons 8.430962e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 1.947781e-01	ci left: 7.631778e-05	ci right 9.298122e-05	k: 404	n:4790000
KS ci ratio: 2.771858e+00	ci left: 5.285555e-09	ci right 1.163182e-06	k: 1	n:4790000
KRAS   4790000 perm   10210 sec   (469 perm/sec)   p_kst 2.087683e-07   p_cons 8.434238e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 1.945381e-01	ci left: 7.635697e-05	ci right 9.300598e-05	k: 405	n:4800000
KS ci ratio: 2.771858e+00	ci left: 5.274543e-09	ci right 1.160758e-06	k: 1	n:4800000
KRAS   4800000 perm   10253 sec   (468 perm/sec)   p_kst 2.083333e-07   p_cons 8.437500e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 1.945381e-01	ci left: 7.619822e-05	ci right 9.281262e-05	k: 405	n:4810000
KS ci ratio: 2.771858e+00	ci left: 5.263578e-09	ci right 1.158345e-06	k: 1	n:4810000
KRAS   4810000 perm   10301 sec   (467 perm/sec)   p_kst 2.079002e-07   p_cons 8.419958e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 1.940607e-01	ci left: 7.643489e-05	ci right 9.305516e-05	k: 407	n:4820000
KS ci ratio: 2.771858e+00	ci left: 5.252657e-09	ci right 1.155942e-06	k: 1	n:4820000
KRAS   4820000 perm   10349 sec   (466 perm/sec)   p_kst 2.074689e-07   p_cons 8.443983e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 1.940607e-01	ci left: 7.627664e-05	ci right 9.286250e-05	k: 407	n:4830000
KS ci ratio: 2.771858e+00	ci left: 5.241782e-09	ci right 1.153549e-06	k: 1	n:4830000
KRAS   4830000 perm   10393 sec   (465 perm/sec)   p_kst 2.070393e-07   p_cons 8.426501e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 1.938233e-01	ci left: 7.631562e-05	ci right 9.288727e-05	k: 408	n:4840000
KS ci ratio: 2.771858e+00	ci left: 5.230952e-09	ci right 1.151165e-06	k: 1	n:4840000
KRAS   4840000 perm   10443 sec   (463 perm/sec)   p_kst 2.066116e-07   p_cons 8.429752e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 1.935868e-01	ci left: 7.635445e-05	ci right 9.291192e-05	k: 409	n:4850000
KS ci ratio: 2.771858e+00	ci left: 5.220167e-09	ci right 1.148792e-06	k: 1	n:4850000
KRAS   4850000 perm   10490 sec   (462 perm/sec)   p_kst 2.061856e-07   p_cons 8.432990e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 1.935868e-01	ci left: 7.619735e-05	ci right 9.272074e-05	k: 409	n:4860000
KS ci ratio: 2.771858e+00	ci left: 5.209426e-09	ci right 1.146428e-06	k: 1	n:4860000
KRAS   4860000 perm   10537 sec   (461 perm/sec)   p_kst 2.057613e-07   p_cons 8.415638e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 1.935868e-01	ci left: 7.604088e-05	ci right 9.253035e-05	k: 409	n:4870000
KS ci ratio: 2.771858e+00	ci left: 5.198729e-09	ci right 1.144074e-06	k: 1	n:4870000
KRAS   4870000 perm   10584 sec   (460 perm/sec)   p_kst 2.053388e-07   p_cons 8.398357e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 1.935868e-01	ci left: 7.588506e-05	ci right 9.234074e-05	k: 409	n:4880000
KS ci ratio: 2.771858e+00	ci left: 5.188076e-09	ci right 1.141730e-06	k: 1	n:4880000
KRAS   4880000 perm   10629 sec   (459 perm/sec)   p_kst 2.049180e-07   p_cons 8.381148e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 1.933512e-01	ci left: 7.592447e-05	ci right 9.236630e-05	k: 410	n:4890000
KS ci ratio: 2.771858e+00	ci left: 5.177466e-09	ci right 1.139395e-06	k: 1	n:4890000
KRAS   4890000 perm   10674 sec   (458 perm/sec)   p_kst 2.044990e-07   p_cons 8.384458e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 1.931164e-01	ci left: 7.596373e-05	ci right 9.239174e-05	k: 411	n:4900000
KS ci ratio: 2.771858e+00	ci left: 5.166900e-09	ci right 1.137070e-06	k: 1	n:4900000
KRAS   4900000 perm   10721 sec   (457 perm/sec)   p_kst 2.040816e-07   p_cons 8.387755e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 1.928825e-01	ci left: 7.600284e-05	ci right 9.241706e-05	k: 412	n:4910000
KS ci ratio: 2.771858e+00	ci left: 5.156376e-09	ci right 1.134754e-06	k: 1	n:4910000
KRAS   4910000 perm   10765 sec   (456 perm/sec)   p_kst 2.036660e-07   p_cons 8.391039e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 1.926494e-01	ci left: 7.604181e-05	ci right 9.244227e-05	k: 413	n:4920000
KS ci ratio: 2.771858e+00	ci left: 5.145896e-09	ci right 1.132447e-06	k: 1	n:4920000
KRAS   4920000 perm   10812 sec   (455 perm/sec)   p_kst 2.032520e-07   p_cons 8.394309e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 1.926494e-01	ci left: 7.588757e-05	ci right 9.225476e-05	k: 413	n:4930000
KS ci ratio: 2.771858e+00	ci left: 5.135458e-09	ci right 1.130150e-06	k: 1	n:4930000
KRAS   4930000 perm   10856 sec   (454 perm/sec)   p_kst 2.028398e-07   p_cons 8.377282e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 1.926494e-01	ci left: 7.573395e-05	ci right 9.206801e-05	k: 413	n:4940000
KS ci ratio: 2.771858e+00	ci left: 5.125062e-09	ci right 1.127863e-06	k: 1	n:4940000
KRAS   4940000 perm   10903 sec   (453 perm/sec)   p_kst 2.024291e-07   p_cons 8.360324e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 1.921857e-01	ci left: 7.596553e-05	ci right 9.230550e-05	k: 415	n:4950000
KS ci ratio: 2.771858e+00	ci left: 5.114709e-09	ci right 1.125584e-06	k: 1	n:4950000
KRAS   4950000 perm   10943 sec   (452 perm/sec)   p_kst 2.020202e-07   p_cons 8.383838e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 1.919551e-01	ci left: 7.600429e-05	ci right 9.233069e-05	k: 416	n:4960000
KS ci ratio: 2.771858e+00	ci left: 5.104397e-09	ci right 1.123315e-06	k: 1	n:4960000
KRAS   4960000 perm   10995 sec   (451 perm/sec)   p_kst 2.016129e-07   p_cons 8.387097e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 1.914964e-01	ci left: 7.623447e-05	ci right 9.256662e-05	k: 418	n:4970000
KS ci ratio: 2.771858e+00	ci left: 5.094126e-09	ci right 1.121054e-06	k: 1	n:4970000
KRAS   4970000 perm   11042 sec   (450 perm/sec)   p_kst 2.012072e-07   p_cons 8.410463e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 1.914965e-01	ci left: 7.608138e-05	ci right 9.238075e-05	k: 418	n:4980000
KS ci ratio: 2.771858e+00	ci left: 5.083897e-09	ci right 1.118803e-06	k: 1	n:4980000
KRAS   4980000 perm   11086 sec   (449 perm/sec)   p_kst 2.008032e-07   p_cons 8.393574e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 1.914965e-01	ci left: 7.592891e-05	ci right 9.219561e-05	k: 418	n:4990000
KS ci ratio: 2.771858e+00	ci left: 5.073709e-09	ci right 1.116561e-06	k: 1	n:4990000
KRAS   4990000 perm   11132 sec   (448 perm/sec)   p_kst 2.004008e-07   p_cons 8.376754e-05   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 2.063083e-01	ci left: 6.475389e-05	ci right 7.983513e-05	k: 360	n:5000000
KS ci ratio: 2.771858e+00	ci left: 5.063562e-09	ci right 1.114328e-06	k: 1	n:5000000
KRAS   5000000 perm   11177 sec   (447 perm/sec)   p_kst 2.000000e-07   p_cons 7.200000e-05   p_joint 0

Outputting figure to mutsig2_images.part000000000093/KRAS.96_707_5000000_2e-07_7.2e-05_0.png
                gene_name: KRAS
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 2.00e-07 
        ci_ks_bounds_left: 5.06e-09 
       ci_ks_bounds_right: 1.11e-06 
                   p_cons: 7.20e-05 
      ci_cons_bounds_left: 6.48e-05 
     ci_cons_bounds_right: 7.98e-05 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 2 percent done.
KNTC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
Cons ci ratio: 1.238931e+00	ci left: 4.116173e-04	ci right 1.707790e-03	k: 9	n:10000
KS ci ratio: 2.031471e-02	ci left: 7.801599e-01	ci right 7.962719e-01	k: 7883	n:10000
KNTC1   10000 perm   3 sec   (3948 perm/sec)   p_kst 7.883000e-01   p_cons 9.000000e-04   p_joint 4.380000e-02

Joint ci ratio: 2.173693e-01	ci left: 1.425935e-02	ci right 1.778339e-02	k: 319	n:20000
Cons ci ratio: 1.011735e+00	ci left: 3.827477e-04	ci right 1.174202e-03	k: 14	n:20000
KS ci ratio: 1.416204e-02	ci left: 7.873175e-01	ci right 7.985972e-01	k: 15860	n:20000
KNTC1   20000 perm   6 sec   (3522 perm/sec)   p_kst 7.930000e-01   p_cons 7.000000e-04   p_joint 1.595000e-02

Joint ci ratio: 2.812540e-01	ci left: 5.529030e-03	ci right 7.368516e-03	k: 192	n:30000
Cons ci ratio: 8.551005e-01	ci left: 4.072634e-04	ci right 1.029426e-03	k: 20	n:30000
KS ci ratio: 1.067324e-02	ci left: 8.136537e-01	ci right 8.224179e-01	k: 24542	n:30000
KNTC1   30000 perm   9 sec   (3449 perm/sec)   p_kst 8.180667e-01   p_cons 6.666667e-04   p_joint 6.400000e-03

Joint ci ratio: 2.446932e-01	ci left: 5.595075e-03	ci right 7.177869e-03	k: 254	n:40000
Cons ci ratio: 7.837452e-01	ci left: 3.844680e-04	ci right 8.926218e-04	k: 24	n:40000
KS ci ratio: 9.380887e-03	ci left: 8.097736e-01	ci right 8.174308e-01	k: 32545	n:40000
KNTC1   40000 perm   12 sec   (3368 perm/sec)   p_kst 8.136250e-01   p_cons 6.000000e-04   p_joint 6.350000e-03

Joint ci ratio: 2.420054e-01	ci left: 4.588444e-03	ci right 5.870034e-03	k: 260	n:50000
Cons ci ratio: 7.277073e-01	ci left: 3.721472e-04	ci right 8.092550e-04	k: 28	n:50000
KS ci ratio: 8.402252e-03	ci left: 8.097556e-01	ci right 8.166080e-01	k: 40660	n:50000
KNTC1   50000 perm   15 sec   (3269 perm/sec)   p_kst 8.132000e-01   p_cons 5.600000e-04   p_joint 5.200000e-03

Joint ci ratio: 2.349837e-01	ci left: 4.074305e-03	ci right 5.174456e-03	k: 276	n:60000
Cons ci ratio: 6.624021e-01	ci left: 3.924641e-04	ci right 7.917707e-04	k: 34	n:60000
KS ci ratio: 7.686562e-03	ci left: 8.094038e-01	ci right 8.156659e-01	k: 48753	n:60000
KNTC1   60000 perm   20 sec   (3076 perm/sec)   p_kst 8.125500e-01   p_cons 5.666667e-04   p_joint 4.600000e-03

Joint ci ratio: 2.262132e-01	ci left: 3.788330e-03	ci right 4.767749e-03	k: 298	n:70000
Cons ci ratio: 6.196249e-01	ci left: 3.962121e-04	ci right 7.615547e-04	k: 39	n:70000
KS ci ratio: 7.135879e-03	ci left: 8.087982e-01	ci right 8.146045e-01	k: 56820	n:70000
KNTC1   70000 perm   23 sec   (3068 perm/sec)   p_kst 8.117143e-01   p_cons 5.571429e-04   p_joint 4.257143e-03

Joint ci ratio: 1.474054e-01	ci left: 8.116259e-03	ci right 9.419740e-03	k: 700	n:80000
Cons ci ratio: 5.907960e-01	ci left: 3.890179e-04	ci right 7.239415e-04	k: 43	n:80000
KS ci ratio: 6.651279e-03	ci left: 8.100794e-01	ci right 8.154979e-01	k: 65024	n:80000
KNTC1   80000 perm   26 sec   (3033 perm/sec)   p_kst 8.128000e-01   p_cons 5.375000e-04   p_joint 8.750000e-03

Joint ci ratio: 1.492036e-01	ci left: 7.042976e-03	ci right 8.189103e-03	k: 684	n:90000
Cons ci ratio: 5.598444e-01	ci left: 3.932633e-04	ci right 7.070612e-04	k: 48	n:90000
KS ci ratio: 6.266760e-03	ci left: 8.104370e-01	ci right 8.155428e-01	k: 73170	n:90000
KNTC1   90000 perm   30 sec   (3019 perm/sec)   p_kst 8.130000e-01   p_cons 5.333333e-04   p_joint 7.600000e-03

Joint ci ratio: 1.466951e-01	ci left: 6.569674e-03	ci right 7.619221e-03	k: 708	n:100000
Cons ci ratio: 5.332977e-01	ci left: 3.970308e-04	ci right 6.931965e-04	k: 53	n:100000
KS ci ratio: 5.948490e-03	ci left: 8.103984e-01	ci right 8.152434e-01	k: 81283	n:100000
KNTC1   100000 perm   34 sec   (2933 perm/sec)   p_kst 8.128300e-01   p_cons 5.300000e-04   p_joint 7.080000e-03

Joint ci ratio: 1.523591e-01	ci left: 5.525905e-03	ci right 6.445889e-03	k: 657	n:110000
Cons ci ratio: 5.102013e-01	ci left: 4.004039e-04	ci right 6.815697e-04	k: 58	n:110000
KS ci ratio: 5.666288e-03	ci left: 8.108018e-01	ci right 8.154181e-01	k: 89443	n:110000
KNTC1   110000 perm   38 sec   (2904 perm/sec)   p_kst 8.131182e-01   p_cons 5.272727e-04   p_joint 5.972727e-03

Joint ci ratio: 1.245149e-01	ci left: 7.681352e-03	ci right 8.709295e-03	k: 982	n:120000
Cons ci ratio: 4.823839e-01	ci left: 4.180710e-04	ci right 6.903473e-04	k: 65	n:120000
KS ci ratio: 5.427908e-03	ci left: 8.107403e-01	ci right 8.151612e-01	k: 97555	n:120000
KNTC1   120000 perm   42 sec   (2865 perm/sec)   p_kst 8.129583e-01   p_cons 5.416667e-04   p_joint 8.183333e-03

Joint ci ratio: 1.246824e-01	ci left: 7.075435e-03	ci right 8.023653e-03	k: 980	n:130000
Cons ci ratio: 4.495217e-01	ci left: 4.538128e-04	ci right 7.231252e-04	k: 75	n:130000
KS ci ratio: 5.209236e-03	ci left: 8.111632e-01	ci right 8.154074e-01	k: 105728	n:130000
KNTC1   130000 perm   46 sec   (2819 perm/sec)   p_kst 8.132923e-01   p_cons 5.769231e-04   p_joint 7.538462e-03

Joint ci ratio: 1.243974e-01	ci left: 6.604548e-03	ci right 7.487483e-03	k: 985	n:140000
Cons ci ratio: 4.354280e-01	ci left: 4.531325e-04	ci right 7.111426e-04	k: 80	n:140000
KS ci ratio: 5.020207e-03	ci left: 8.112129e-01	ci right 8.153027e-01	k: 113857	n:140000
KNTC1   140000 perm   50 sec   (2803 perm/sec)   p_kst 8.132643e-01   p_cons 5.714286e-04   p_joint 7.035714e-03

Joint ci ratio: 1.221408e-01	ci left: 6.403264e-03	ci right 7.242636e-03	k: 1022	n:150000
Cons ci ratio: 4.250618e-01	ci left: 4.467018e-04	ci right 6.932719e-04	k: 84	n:150000
KS ci ratio: 4.854093e-03	ci left: 8.110241e-01	ci right 8.149771e-01	k: 121951	n:150000
KNTC1   150000 perm   54 sec   (2779 perm/sec)   p_kst 8.130067e-01   p_cons 5.600000e-04   p_joint 6.813333e-03

Joint ci ratio: 1.189892e-01	ci left: 6.336430e-03	ci right 7.144100e-03	k: 1077	n:160000
Cons ci ratio: 4.225895e-01	ci left: 4.243650e-04	ci right 6.568576e-04	k: 85	n:160000
KS ci ratio: 4.702182e-03	ci left: 8.109426e-01	ci right 8.147710e-01	k: 130058	n:160000
KNTC1   160000 perm   58 sec   (2749 perm/sec)   p_kst 8.128625e-01   p_cons 5.312500e-04   p_joint 6.731250e-03

Joint ci ratio: 1.258302e-01	ci left: 5.319152e-03	ci right 6.039040e-03	k: 964	n:170000
Cons ci ratio: 4.108165e-01	ci left: 4.257304e-04	ci right 6.506975e-04	k: 90	n:170000
KS ci ratio: 4.561841e-03	ci left: 8.109965e-01	ci right 8.147104e-01	k: 138186	n:170000
KNTC1   170000 perm   62 sec   (2720 perm/sec)   p_kst 8.128588e-01   p_cons 5.294118e-04   p_joint 5.670588e-03

Joint ci ratio: 1.228769e-01	ci left: 5.276625e-03	ci right 5.972776e-03	k: 1011	n:180000
Cons ci ratio: 4.042104e-01	ci left: 4.170363e-04	ci right 6.329148e-04	k: 93	n:180000
KS ci ratio: 4.431093e-03	ci left: 8.112021e-01	ci right 8.148101e-01	k: 146342	n:180000
KNTC1   180000 perm   67 sec   (2699 perm/sec)   p_kst 8.130111e-01   p_cons 5.166667e-04   p_joint 5.616667e-03

Joint ci ratio: 1.249602e-01	ci left: 4.830538e-03	ci right 5.479438e-03	k: 978	n:190000
Cons ci ratio: 3.880326e-01	ci left: 4.330000e-04	ci right 6.458797e-04	k: 101	n:190000
KS ci ratio: 4.314111e-03	ci left: 8.111654e-01	ci right 8.146777e-01	k: 154456	n:190000
KNTC1   190000 perm   71 sec   (2679 perm/sec)   p_kst 8.129263e-01   p_cons 5.315789e-04   p_joint 5.147368e-03

Joint ci ratio: 1.227290e-01	ci left: 4.763424e-03	ci right 5.391053e-03	k: 1014	n:200000
Cons ci ratio: 3.842867e-01	ci left: 4.203785e-04	ci right 6.245531e-04	k: 103	n:200000
KS ci ratio: 4.205446e-03	ci left: 8.111687e-01	ci right 8.145922e-01	k: 162577	n:200000
KNTC1   200000 perm   75 sec   (2651 perm/sec)   p_kst 8.128850e-01   p_cons 5.150000e-04   p_joint 5.070000e-03

Joint ci ratio: 1.196444e-01	ci left: 4.781327e-03	ci right 5.394361e-03	k: 1067	n:210000
Cons ci ratio: 3.638615e-01	ci left: 4.521362e-04	ci right 6.572977e-04	k: 115	n:210000
KS ci ratio: 4.114681e-03	ci left: 8.104226e-01	ci right 8.137688e-01	k: 170541	n:210000
KNTC1   210000 perm   80 sec   (2626 perm/sec)   p_kst 8.121000e-01   p_cons 5.476190e-04   p_joint 5.080952e-03

Joint ci ratio: 1.070815e-01	ci left: 5.730210e-03	ci right 6.382907e-03	k: 1331	n:220000
Cons ci ratio: 3.577470e-01	ci left: 4.481181e-04	ci right 6.472439e-04	k: 119	n:220000
KS ci ratio: 4.020317e-03	ci left: 8.104431e-01	ci right 8.137124e-01	k: 178658	n:220000
KNTC1   220000 perm   84 sec   (2604 perm/sec)   p_kst 8.120818e-01   p_cons 5.409091e-04   p_joint 6.050000e-03

Joint ci ratio: 1.050525e-01	ci left: 5.701155e-03	ci right 6.337477e-03	k: 1383	n:230000
Cons ci ratio: 3.463851e-01	ci left: 4.603427e-04	ci right 6.569478e-04	k: 127	n:230000
KS ci ratio: 3.929753e-03	ci left: 8.106501e-01	ci right 8.138463e-01	k: 186818	n:230000
KNTC1   230000 perm   89 sec   (2580 perm/sec)   p_kst 8.122522e-01   p_cons 5.521739e-04   p_joint 6.013043e-03

Joint ci ratio: 1.055656e-01	ci left: 5.410824e-03	ci right 6.017873e-03	k: 1370	n:240000
Cons ci ratio: 3.410977e-01	ci left: 4.563895e-04	ci right 6.476752e-04	k: 131	n:240000
KS ci ratio: 3.844621e-03	ci left: 8.108741e-01	ci right 8.140017e-01	k: 194986	n:240000
KNTC1   240000 perm   94 sec   (2560 perm/sec)   p_kst 8.124417e-01   p_cons 5.458333e-04   p_joint 5.708333e-03

Joint ci ratio: 1.122790e-01	ci left: 4.579481e-03	ci right 5.128095e-03	k: 1212	n:250000
Cons ci ratio: 3.323970e-01	ci left: 4.637672e-04	ci right 6.521263e-04	k: 138	n:250000
KS ci ratio: 3.769831e-03	ci left: 8.106715e-01	ci right 8.137373e-01	k: 203052	n:250000
KNTC1   250000 perm   99 sec   (2537 perm/sec)   p_kst 8.122080e-01   p_cons 5.520000e-04   p_joint 4.848000e-03

Joint ci ratio: 1.111446e-01	ci left: 4.496803e-03	ci right 5.029713e-03	k: 1237	n:260000
Cons ci ratio: 3.243298e-01	ci left: 4.706344e-04	ci right 6.561785e-04	k: 145	n:260000
KS ci ratio: 3.694203e-03	ci left: 8.109017e-01	ci right 8.139067e-01	k: 211226	n:260000
KNTC1   260000 perm   104 sec   (2509 perm/sec)   p_kst 8.124077e-01   p_cons 5.576923e-04   p_joint 4.757692e-03

Joint ci ratio: 1.149470e-01	ci left: 4.042280e-03	ci right 4.538824e-03	k: 1157	n:270000
Cons ci ratio: 3.189153e-01	ci left: 4.702272e-04	ci right 6.518840e-04	k: 150	n:270000
KS ci ratio: 3.624269e-03	ci left: 8.110040e-01	ci right 8.139523e-01	k: 219370	n:270000
KNTC1   270000 perm   109 sec   (2484 perm/sec)   p_kst 8.124815e-01   p_cons 5.555556e-04   p_joint 4.285185e-03

Joint ci ratio: 1.152561e-01	ci left: 3.877082e-03	ci right 4.354701e-03	k: 1151	n:280000
Cons ci ratio: 3.147743e-01	ci left: 4.665830e-04	ci right 6.440207e-04	k: 154	n:280000
KS ci ratio: 3.556158e-03	ci left: 8.112714e-01	ci right 8.141650e-01	k: 227562	n:280000
KNTC1   280000 perm   114 sec   (2452 perm/sec)   p_kst 8.127214e-01   p_cons 5.500000e-04   p_joint 4.110714e-03

Joint ci ratio: 1.128789e-01	ci left: 3.907538e-03	ci right 4.378319e-03	k: 1200	n:290000
Cons ci ratio: 3.069513e-01	ci left: 4.759291e-04	ci right 6.515436e-04	k: 162	n:290000
KS ci ratio: 3.492574e-03	ci left: 8.114481e-01	ci right 8.142905e-01	k: 235733	n:290000
KNTC1   290000 perm   119 sec   (2429 perm/sec)   p_kst 8.128724e-01   p_cons 5.586207e-04   p_joint 4.137931e-03

Joint ci ratio: 1.129812e-01	ci left: 3.770793e-03	ci right 4.225538e-03	k: 1198	n:300000
Cons ci ratio: 3.023494e-01	ci left: 4.754576e-04	ci right 6.477623e-04	k: 167	n:300000
KS ci ratio: 3.432957e-03	ci left: 8.115533e-01	ci right 8.143474e-01	k: 243886	n:300000
KNTC1   300000 perm   125 sec   (2401 perm/sec)   p_kst 8.129533e-01   p_cons 5.566667e-04   p_joint 3.993333e-03

Joint ci ratio: 1.053259e-01	ci left: 4.214014e-03	ci right 4.685646e-03	k: 1378	n:310000
Cons ci ratio: 2.979484e-01	ci left: 4.750349e-04	ci right 6.442067e-04	k: 172	n:310000
KS ci ratio: 3.374107e-03	ci left: 8.118493e-01	ci right 8.145964e-01	k: 252100	n:310000
KNTC1   310000 perm   130 sec   (2379 perm/sec)   p_kst 8.132258e-01   p_cons 5.548387e-04   p_joint 4.445161e-03

Joint ci ratio: 1.052184e-01	ci left: 4.091441e-03	ci right 4.548857e-03	k: 1381	n:320000
Cons ci ratio: 2.929121e-01	ci left: 4.775507e-04	ci right 6.442106e-04	k: 178	n:320000
KS ci ratio: 3.321489e-03	ci left: 8.118233e-01	ci right 8.145273e-01	k: 260217	n:320000
KNTC1   320000 perm   136 sec   (2361 perm/sec)   p_kst 8.131781e-01   p_cons 5.562500e-04   p_joint 4.315625e-03

Joint ci ratio: 1.071498e-01	ci left: 3.822888e-03	ci right 4.258620e-03	k: 1332	n:330000
Cons ci ratio: 2.896939e-01	ci left: 4.743150e-04	ci right 6.376937e-04	k: 182	n:330000
KS ci ratio: 3.277716e-03	ci left: 8.111975e-01	ci right 8.138637e-01	k: 268136	n:330000
KNTC1   330000 perm   141 sec   (2343 perm/sec)   p_kst 8.125333e-01   p_cons 5.515152e-04   p_joint 4.036364e-03

Joint ci ratio: 1.054235e-01	ci left: 3.836423e-03	ci right 4.266215e-03	k: 1376	n:340000
Cons ci ratio: 2.828213e-01	ci left: 4.849355e-04	ci right 6.473031e-04	k: 191	n:340000
KS ci ratio: 3.226888e-03	ci left: 8.114316e-01	ci right 8.140572e-01	k: 276334	n:340000
KNTC1   340000 perm   146 sec   (2325 perm/sec)   p_kst 8.127471e-01   p_cons 5.617647e-04   p_joint 4.047059e-03

Joint ci ratio: 1.066018e-01	ci left: 3.643350e-03	ci right 4.056360e-03	k: 1346	n:350000
Cons ci ratio: 2.799212e-01	ci left: 4.817023e-04	ci right 6.410418e-04	k: 195	n:350000
KS ci ratio: 3.178499e-03	ci left: 8.116383e-01	ci right 8.142250e-01	k: 284527	n:350000
KNTC1   350000 perm   152 sec   (2307 perm/sec)   p_kst 8.129343e-01   p_cons 5.571429e-04   p_joint 3.845714e-03

Joint ci ratio: 9.100249e-02	ci left: 4.894348e-03	ci right 5.363672e-03	k: 1845	n:360000
Cons ci ratio: 2.730408e-01	ci left: 4.941746e-04	ci right 6.529328e-04	k: 205	n:360000
KS ci ratio: 3.133422e-03	ci left: 8.117168e-01	ci right 8.142670e-01	k: 292678	n:360000
KNTC1   360000 perm   157 sec   (2288 perm/sec)   p_kst 8.129944e-01   p_cons 5.694444e-04   p_joint 5.125000e-03

Joint ci ratio: 8.972338e-02	ci left: 4.902076e-03	ci right 5.365186e-03	k: 1898	n:370000
Cons ci ratio: 2.710751e-01	ci left: 4.883734e-04	ci right 6.439461e-04	k: 208	n:370000
KS ci ratio: 3.091721e-03	ci left: 8.116423e-01	ci right 8.141582e-01	k: 300774	n:370000
KNTC1   370000 perm   164 sec   (2257 perm/sec)   p_kst 8.129027e-01   p_cons 5.621622e-04   p_joint 5.129730e-03

Joint ci ratio: 8.939888e-02	ci left: 4.809080e-03	ci right 5.261676e-03	k: 1912	n:380000
Cons ci ratio: 2.660306e-01	ci left: 4.951571e-04	ci right 6.494664e-04	k: 216	n:380000
KS ci ratio: 3.051720e-03	ci left: 8.115640e-01	ci right 8.140470e-01	k: 308867	n:380000
KNTC1   380000 perm   170 sec   (2241 perm/sec)   p_kst 8.128079e-01   p_cons 5.684211e-04   p_joint 5.031579e-03

Joint ci ratio: 8.823045e-02	ci left: 4.813636e-03	ci right 5.260434e-03	k: 1963	n:390000
Cons ci ratio: 2.606786e-01	ci left: 5.040148e-04	ci right 6.574098e-04	k: 225	n:390000
KS ci ratio: 3.013942e-03	ci left: 8.114179e-01	ci right 8.138697e-01	k: 316932	n:390000
KNTC1   390000 perm   176 sec   (2220 perm/sec)   p_kst 8.126462e-01   p_cons 5.769231e-04   p_joint 5.033333e-03

Joint ci ratio: 9.005097e-02	ci left: 4.502609e-03	ci right 4.929615e-03	k: 1885	n:400000
Cons ci ratio: 2.561831e-01	ci left: 5.101192e-04	ci right 6.622669e-04	k: 233	n:400000
KS ci ratio: 2.976945e-03	ci left: 8.113395e-01	ci right 8.137609e-01	k: 325021	n:400000
KNTC1   400000 perm   183 sec   (2185 perm/sec)   p_kst 8.125525e-01   p_cons 5.825000e-04   p_joint 4.712500e-03

Joint ci ratio: 9.012822e-02	ci left: 4.385625e-03	ci right 4.801912e-03	k: 1882	n:410000
Cons ci ratio: 2.529605e-01	ci left: 5.113779e-04	ci right 6.616798e-04	k: 239	n:410000
KS ci ratio: 2.941041e-03	ci left: 8.112896e-01	ci right 8.136816e-01	k: 333120	n:410000
KNTC1   410000 perm   189 sec   (2168 perm/sec)   p_kst 8.124878e-01   p_cons 5.829268e-04   p_joint 4.590244e-03

Joint ci ratio: 8.956163e-02	ci left: 4.337059e-03	ci right 4.746013e-03	k: 1906	n:420000
Cons ci ratio: 2.503663e-01	ci left: 5.103561e-04	ci right 6.585796e-04	k: 244	n:420000
KS ci ratio: 2.905860e-03	ci left: 8.112995e-01	ci right 8.136628e-01	k: 341243	n:420000
KNTC1   420000 perm   195 sec   (2153 perm/sec)   p_kst 8.124833e-01   p_cons 5.809524e-04   p_joint 4.538095e-03

Joint ci ratio: 8.949571e-02	ci left: 4.243009e-03	ci right 4.642784e-03	k: 1909	n:430000
Cons ci ratio: 2.488482e-01	ci left: 5.050275e-04	ci right 6.506764e-04	k: 247	n:430000
KS ci ratio: 2.872263e-03	ci left: 8.112718e-01	ci right 8.136077e-01	k: 349350	n:430000
KNTC1   430000 perm   201 sec   (2138 perm/sec)   p_kst 8.124419e-01   p_cons 5.744186e-04   p_joint 4.439535e-03

Joint ci ratio: 8.884851e-02	ci left: 4.208791e-03	ci right 4.602325e-03	k: 1937	n:440000
Cons ci ratio: 2.473573e-01	ci left: 4.999438e-04	ci right 6.431298e-04	k: 250	n:440000
KS ci ratio: 2.838132e-03	ci left: 8.114255e-01	ci right 8.137340e-01	k: 357536	n:440000
KNTC1   440000 perm   207 sec   (2122 perm/sec)   p_kst 8.125818e-01   p_cons 5.681818e-04   p_joint 4.402273e-03

Joint ci ratio: 8.805781e-02	ci left: 4.191318e-03	ci right 4.579551e-03	k: 1972	n:450000
Cons ci ratio: 2.468674e-01	ci left: 4.909182e-04	ci right 6.311980e-04	k: 251	n:450000
KS ci ratio: 2.807460e-03	ci left: 8.113253e-01	ci right 8.136085e-01	k: 365611	n:450000
KNTC1   450000 perm   214 sec   (2106 perm/sec)   p_kst 8.124689e-01   p_cons 5.577778e-04   p_joint 4.382222e-03

Joint ci ratio: 8.696221e-02	ci left: 4.206520e-03	ci right 4.591068e-03	k: 2022	n:460000
Cons ci ratio: 2.454116e-01	ci left: 4.863654e-04	ci right 6.243997e-04	k: 254	n:460000
KS ci ratio: 2.776592e-03	ci left: 8.113581e-01	ci right 8.136162e-01	k: 373745	n:460000
KNTC1   460000 perm   220 sec   (2090 perm/sec)   p_kst 8.124891e-01   p_cons 5.521739e-04   p_joint 4.395652e-03

Joint ci ratio: 8.603166e-02	ci left: 4.208612e-03	ci right 4.589027e-03	k: 2066	n:470000
Cons ci ratio: 2.444558e-01	ci left: 4.800112e-04	ci right 6.156309e-04	k: 256	n:470000
KS ci ratio: 2.744917e-03	ci left: 8.115901e-01	ci right 8.138230e-01	k: 381973	n:470000
KNTC1   470000 perm   227 sec   (2071 perm/sec)   p_kst 8.127085e-01   p_cons 5.446809e-04   p_joint 4.395745e-03

Joint ci ratio: 8.511010e-02	ci left: 4.212677e-03	ci right 4.589177e-03	k: 2111	n:480000
Cons ci ratio: 2.425757e-01	ci left: 4.778358e-04	ci right 6.116462e-04	k: 260	n:480000
KS ci ratio: 2.716510e-03	ci left: 8.115641e-01	ci right 8.137738e-01	k: 390082	n:480000
KNTC1   480000 perm   234 sec   (2050 perm/sec)   p_kst 8.126708e-01   p_cons 5.416667e-04   p_joint 4.397917e-03

Joint ci ratio: 8.723416e-02	ci left: 3.924997e-03	ci right 4.284987e-03	k: 2010	n:490000
Cons ci ratio: 2.398345e-01	ci left: 4.795889e-04	ci right 6.121471e-04	k: 266	n:490000
KS ci ratio: 2.689129e-03	ci left: 8.115209e-01	ci right 8.137081e-01	k: 398182	n:490000
KNTC1   490000 perm   241 sec   (2036 perm/sec)   p_kst 8.126163e-01   p_cons 5.428571e-04   p_joint 4.102041e-03

Joint ci ratio: 8.652780e-02	ci left: 3.911062e-03	ci right 4.266722e-03	k: 2043	n:500000
Cons ci ratio: 2.376200e-01	ci left: 4.793991e-04	ci right 6.105012e-04	k: 271	n:500000
KS ci ratio: 2.662122e-03	ci left: 8.115296e-01	ci right 8.136948e-01	k: 406307	n:500000
KNTC1   500000 perm   248 sec   (2018 perm/sec)   p_kst 8.126140e-01   p_cons 5.420000e-04   p_joint 4.086000e-03

Joint ci ratio: 8.556985e-02	ci left: 3.922631e-03	ci right 4.275196e-03	k: 2089	n:510000
Cons ci ratio: 2.350417e-01	ci left: 4.810673e-04	ci right 6.109905e-04	k: 277	n:510000
KS ci ratio: 2.636354e-03	ci left: 8.114870e-01	ci right 8.136311e-01	k: 414406	n:510000
KNTC1   510000 perm   255 sec   (2003 perm/sec)   p_kst 8.125608e-01   p_cons 5.431373e-04   p_joint 4.096078e-03

Joint ci ratio: 8.494304e-02	ci left: 3.905538e-03	ci right 4.253869e-03	k: 2120	n:520000
Cons ci ratio: 2.329562e-01	ci left: 4.808677e-04	ci right 6.094188e-04	k: 282	n:520000
KS ci ratio: 2.610859e-03	ci left: 8.115000e-01	ci right 8.136234e-01	k: 422533	n:520000
KNTC1   520000 perm   262 sec   (1987 perm/sec)   p_kst 8.125635e-01   p_cons 5.423077e-04   p_joint 4.076923e-03

Joint ci ratio: 8.460657e-02	ci left: 3.863241e-03	ci right 4.206367e-03	k: 2137	n:530000
Cons ci ratio: 2.317317e-01	ci left: 4.771255e-04	ci right 6.039097e-04	k: 285	n:530000
KS ci ratio: 2.586297e-03	ci left: 8.114881e-01	ci right 8.135915e-01	k: 430647	n:530000
KNTC1   530000 perm   269 sec   (1972 perm/sec)   p_kst 8.125415e-01   p_cons 5.377358e-04   p_joint 4.032075e-03

Joint ci ratio: 8.310131e-02	ci left: 3.933121e-03	ci right 4.275937e-03	k: 2215	n:540000
Cons ci ratio: 2.281687e-01	ci left: 4.839967e-04	ci right 6.103510e-04	k: 294	n:540000
KS ci ratio: 2.561185e-03	ci left: 8.116234e-01	ci right 8.137066e-01	k: 438840	n:540000
KNTC1   540000 perm   276 sec   (1960 perm/sec)   p_kst 8.126667e-01   p_cons 5.444444e-04   p_joint 4.101852e-03

Joint ci ratio: 8.225162e-02	ci left: 3.943517e-03	ci right 4.283557e-03	k: 2261	n:550000
Cons ci ratio: 2.255085e-01	ci left: 4.872010e-04	ci right 6.127028e-04	k: 301	n:550000
KS ci ratio: 2.537653e-03	ci left: 8.116499e-01	ci right 8.137140e-01	k: 446976	n:550000
KNTC1   550000 perm   283 sec   (1947 perm/sec)   p_kst 8.126836e-01   p_cons 5.472727e-04   p_joint 4.110909e-03

Joint ci ratio: 8.410393e-02	ci left: 3.701718e-03	ci right 4.028448e-03	k: 2163	n:560000
Cons ci ratio: 2.243972e-01	ci left: 4.835561e-04	ci right 6.074204e-04	k: 304	n:560000
KS ci ratio: 2.513637e-03	ci left: 8.118116e-01	ci right 8.138566e-01	k: 455188	n:560000
KNTC1   560000 perm   290 sec   (1933 perm/sec)   p_kst 8.128357e-01   p_cons 5.428571e-04   p_joint 3.862500e-03

Joint ci ratio: 8.320461e-02	ci left: 3.717508e-03	ci right 4.041953e-03	k: 2210	n:570000
Cons ci ratio: 2.229404e-01	ci left: 4.816970e-04	ci right 6.041740e-04	k: 308	n:570000
KS ci ratio: 2.491941e-03	ci left: 8.117656e-01	ci right 8.137927e-01	k: 463285	n:570000
KNTC1   570000 perm   297 sec   (1918 perm/sec)   p_kst 8.127807e-01   p_cons 5.403509e-04   p_joint 3.877193e-03

Joint ci ratio: 8.237015e-02	ci left: 3.729394e-03	ci right 4.051455e-03	k: 2255	n:580000
Cons ci ratio: 2.208068e-01	ci left: 4.831619e-04	ci right 6.046760e-04	k: 314	n:580000
KS ci ratio: 2.470180e-03	ci left: 8.117972e-01	ci right 8.138066e-01	k: 471426	n:580000
KNTC1   580000 perm   305 sec   (1903 perm/sec)   p_kst 8.128034e-01   p_cons 5.413793e-04   p_joint 3.887931e-03

Joint ci ratio: 8.164942e-02	ci left: 3.732590e-03	ci right 4.051973e-03	k: 2295	n:590000
Cons ci ratio: 2.183933e-01	ci left: 4.861847e-04	ci right 6.069430e-04	k: 321	n:590000
KS ci ratio: 2.449171e-03	ci left: 8.118040e-01	ci right 8.137963e-01	k: 479553	n:590000
KNTC1   590000 perm   312 sec   (1890 perm/sec)   p_kst 8.128017e-01   p_cons 5.440678e-04   p_joint 3.889831e-03

Joint ci ratio: 8.183116e-02	ci left: 3.654048e-03	ci right 3.967439e-03	k: 2285	n:600000
Cons ci ratio: 2.163864e-01	ci left: 4.875372e-04	ci right 6.073709e-04	k: 327	n:600000
KS ci ratio: 2.429062e-03	ci left: 8.117639e-01	ci right 8.137397e-01	k: 487652	n:600000
KNTC1   600000 perm   320 sec   (1877 perm/sec)   p_kst 8.127533e-01   p_cons 5.450000e-04   p_joint 3.808333e-03

Joint ci ratio: 8.138821e-02	ci left: 3.634291e-03	ci right 3.944221e-03	k: 2310	n:610000
Cons ci ratio: 2.157303e-01	ci left: 4.826459e-04	ci right 6.008700e-04	k: 329	n:610000
KS ci ratio: 2.408855e-03	ci left: 8.117991e-01	ci right 8.137586e-01	k: 495796	n:610000
KNTC1   610000 perm   327 sec   (1865 perm/sec)   p_kst 8.127803e-01   p_cons 5.393443e-04   p_joint 3.786885e-03

Joint ci ratio: 8.123209e-02	ci left: 3.589892e-03	ci right 3.895419e-03	k: 2319	n:620000
Cons ci ratio: 2.134778e-01	ci left: 4.855449e-04	ci right 6.030747e-04	k: 336	n:620000
KS ci ratio: 2.389044e-03	ci left: 8.118462e-01	ci right 8.137896e-01	k: 503948	n:620000
KNTC1   620000 perm   335 sec   (1853 perm/sec)   p_kst 8.128194e-01   p_cons 5.419355e-04   p_joint 3.740323e-03

Joint ci ratio: 8.083333e-02	ci left: 3.568676e-03	ci right 3.870837e-03	k: 2342	n:630000
Cons ci ratio: 2.119116e-01	ci left: 4.853516e-04	ci right 6.018607e-04	k: 341	n:630000
KS ci ratio: 2.369144e-03	ci left: 8.119650e-01	ci right 8.138925e-01	k: 512146	n:630000
KNTC1   630000 perm   342 sec   (1841 perm/sec)   p_kst 8.129302e-01   p_cons 5.412698e-04   p_joint 3.717460e-03

Joint ci ratio: 8.057722e-02	ci left: 3.535877e-03	ci right 3.834268e-03	k: 2357	n:640000
Cons ci ratio: 2.106834e-01	ci left: 4.836872e-04	ci right 5.990370e-04	k: 345	n:640000
KS ci ratio: 2.350324e-03	ci left: 8.120034e-01	ci right 8.139156e-01	k: 520295	n:640000
KNTC1   640000 perm   350 sec   (1830 perm/sec)   p_kst 8.129609e-01   p_cons 5.390625e-04   p_joint 3.682812e-03

Joint ci ratio: 7.990217e-02	ci left: 3.541783e-03	ci right 3.838052e-03	k: 2397	n:650000
Cons ci ratio: 2.085837e-01	ci left: 4.864499e-04	ci right 6.011547e-04	k: 352	n:650000
KS ci ratio: 2.331769e-03	ci left: 8.120638e-01	ci right 8.139611e-01	k: 528459	n:650000
KNTC1   650000 perm   357 sec   (1819 perm/sec)   p_kst 8.130138e-01   p_cons 5.415385e-04   p_joint 3.687692e-03

Joint ci ratio: 7.962165e-02	ci left: 3.513362e-03	ci right 3.806173e-03	k: 2414	n:660000
Cons ci ratio: 2.077034e-01	ci left: 4.833879e-04	ci right 5.968284e-04	k: 355	n:660000
KS ci ratio: 2.314649e-03	ci left: 8.119904e-01	ci right 8.138735e-01	k: 536536	n:660000
KNTC1   660000 perm   365 sec   (1807 perm/sec)   p_kst 8.129333e-01   p_cons 5.378788e-04   p_joint 3.657576e-03

Joint ci ratio: 7.950827e-02	ci left: 3.471160e-03	ci right 3.760024e-03	k: 2421	n:670000
Cons ci ratio: 2.065465e-01	ci left: 4.818336e-04	ci right 5.942000e-04	k: 359	n:670000
KS ci ratio: 2.297021e-03	ci left: 8.120359e-01	ci right 8.139047e-01	k: 544691	n:670000
KNTC1   670000 perm   373 sec   (1796 perm/sec)   p_kst 8.129716e-01   p_cons 5.358209e-04   p_joint 3.613433e-03

Joint ci ratio: 7.135128e-02	ci left: 4.261400e-03	ci right 4.578139e-03	k: 3004	n:680000
Cons ci ratio: 2.045670e-01	ci left: 4.845121e-04	ci right 5.962849e-04	k: 366	n:680000
KS ci ratio: 2.279967e-03	ci left: 8.120565e-01	ci right 8.139115e-01	k: 552830	n:680000
KNTC1   680000 perm   381 sec   (1785 perm/sec)   p_kst 8.129853e-01   p_cons 5.382353e-04   p_joint 4.417647e-03

Joint ci ratio: 7.509742e-02	ci left: 3.785583e-03	ci right 4.082373e-03	k: 2713	n:690000
Cons ci ratio: 2.040123e-01	ci left: 4.802404e-04	ci right 5.906899e-04	k: 368	n:690000
KS ci ratio: 2.262941e-03	ci left: 8.121230e-01	ci right 8.139643e-01	k: 561001	n:690000
KNTC1   690000 perm   389 sec   (1774 perm/sec)   p_kst 8.130449e-01   p_cons 5.333333e-04   p_joint 3.931884e-03

Joint ci ratio: 6.674901e-02	ci left: 4.739162e-03	ci right 5.067813e-03	k: 3431	n:700000
Cons ci ratio: 2.018358e-01	ci left: 4.842278e-04	ci right 5.942598e-04	k: 376	n:700000
KS ci ratio: 2.246122e-03	ci left: 8.122105e-01	ci right 8.140383e-01	k: 569188	n:700000
KNTC1   700000 perm   397 sec   (1763 perm/sec)   p_kst 8.131257e-01   p_cons 5.371429e-04   p_joint 4.901429e-03

Joint ci ratio: 6.705633e-02	ci left: 4.629473e-03	ci right 4.952053e-03	k: 3400	n:710000
Cons ci ratio: 2.002485e-01	ci left: 4.854330e-04	ci right 5.947654e-04	k: 382	n:710000
KS ci ratio: 2.229951e-03	ci left: 8.122576e-01	ci right 8.140723e-01	k: 577348	n:710000
KNTC1   710000 perm   405 sec   (1753 perm/sec)   p_kst 8.131662e-01   p_cons 5.380282e-04   p_joint 4.788732e-03

Joint ci ratio: 6.761006e-02	ci left: 4.490061e-03	ci right 4.805611e-03	k: 3345	n:720000
Cons ci ratio: 1.986981e-01	ci left: 4.866081e-04	ci right 5.952538e-04	k: 388	n:720000
KS ci ratio: 2.215126e-03	ci left: 8.121656e-01	ci right 8.139680e-01	k: 585409	n:720000
KNTC1   720000 perm   413 sec   (1743 perm/sec)   p_kst 8.130681e-01   p_cons 5.388889e-04   p_joint 4.645833e-03

Joint ci ratio: 7.044984e-02	ci left: 4.074465e-03	ci right 4.373326e-03	k: 3082	n:730000
Cons ci ratio: 1.981897e-01	ci left: 4.825457e-04	ci right 5.899754e-04	k: 390	n:730000
KS ci ratio: 2.199740e-03	ci left: 8.121942e-01	ci right 8.139841e-01	k: 593556	n:730000
KNTC1   730000 perm   422 sec   (1731 perm/sec)   p_kst 8.130904e-01   p_cons 5.342466e-04   p_joint 4.221918e-03

Joint ci ratio: 7.004238e-02	ci left: 4.067198e-03	ci right 4.363731e-03	k: 3118	n:740000
Cons ci ratio: 1.961924e-01	ci left: 4.863020e-04	ci right 5.933465e-04	k: 398	n:740000
KS ci ratio: 2.184349e-03	ci left: 8.122668e-01	ci right 8.140443e-01	k: 601736	n:740000
KNTC1   740000 perm   430 sec   (1720 perm/sec)   p_kst 8.131568e-01   p_cons 5.378378e-04   p_joint 4.213514e-03

Joint ci ratio: 6.953134e-02	ci left: 4.073232e-03	ci right 4.367951e-03	k: 3164	n:750000
Cons ci ratio: 1.952165e-01	ci left: 4.848899e-04	ci right 5.910296e-04	k: 402	n:750000
KS ci ratio: 2.169477e-03	ci left: 8.123094e-01	ci right 8.140749e-01	k: 609895	n:750000
KNTC1   750000 perm   439 sec   (1710 perm/sec)   p_kst 8.131933e-01   p_cons 5.360000e-04   p_joint 4.218667e-03

Joint ci ratio: 6.919382e-02	ci left: 4.059718e-03	ci right 4.351976e-03	k: 3195	n:760000
Cons ci ratio: 1.940167e-01	ci left: 4.847682e-04	ci right 5.901520e-04	k: 407	n:760000
KS ci ratio: 2.154988e-03	ci left: 8.123390e-01	ci right 8.140928e-01	k: 618045	n:760000
KNTC1   760000 perm   447 sec   (1700 perm/sec)   p_kst 8.132171e-01   p_cons 5.355263e-04   p_joint 4.203947e-03

Joint ci ratio: 6.876493e-02	ci left: 4.058046e-03	ci right 4.348301e-03	k: 3235	n:770000
Cons ci ratio: 1.926056e-01	ci left: 4.858876e-04	ci right 5.906566e-04	k: 413	n:770000
KS ci ratio: 2.140383e-03	ci left: 8.124252e-01	ci right 8.141672e-01	k: 626239	n:770000
KNTC1   770000 perm   455 sec   (1691 perm/sec)   p_kst 8.132974e-01   p_cons 5.363636e-04   p_joint 4.201299e-03

Joint ci ratio: 6.875613e-02	ci left: 4.007276e-03	ci right 4.293861e-03	k: 3236	n:780000
Cons ci ratio: 1.919118e-01	ci left: 4.833193e-04	ci right 5.871152e-04	k: 416	n:780000
KS ci ratio: 2.127247e-03	ci left: 8.123410e-01	ci right 8.140721e-01	k: 634302	n:780000
KNTC1   780000 perm   464 sec   (1681 perm/sec)   p_kst 8.132077e-01   p_cons 5.333333e-04   p_joint 4.148718e-03

Joint ci ratio: 6.845074e-02	ci left: 3.992630e-03	ci right 4.276848e-03	k: 3265	n:790000
Cons ci ratio: 1.907715e-01	ci left: 4.832272e-04	ci right 5.863153e-04	k: 421	n:790000
KS ci ratio: 2.114507e-03	ci left: 8.122361e-01	ci right 8.139566e-01	k: 642347	n:790000
KNTC1   790000 perm   473 sec   (1672 perm/sec)   p_kst 8.130975e-01   p_cons 5.329114e-04   p_joint 4.132911e-03

Joint ci ratio: 6.867455e-02	ci left: 3.916917e-03	ci right 4.196693e-03	k: 3244	n:800000
Cons ci ratio: 1.903215e-01	ci left: 4.795675e-04	ci right 5.816056e-04	k: 423	n:800000
KS ci ratio: 2.101483e-03	ci left: 8.122077e-01	ci right 8.139175e-01	k: 650451	n:800000
KNTC1   800000 perm   481 sec   (1662 perm/sec)   p_kst 8.130637e-01   p_cons 5.287500e-04   p_joint 4.055000e-03

Joint ci ratio: 6.828650e-02	ci left: 3.913456e-03	ci right 4.191344e-03	k: 3281	n:810000
Cons ci ratio: 1.896520e-01	ci left: 4.771745e-04	ci right 5.783050e-04	k: 426	n:810000
KS ci ratio: 2.088442e-03	ci left: 8.122172e-01	ci right 8.139164e-01	k: 658585	n:810000
KNTC1   810000 perm   490 sec   (1653 perm/sec)   p_kst 8.130679e-01   p_cons 5.259259e-04   p_joint 4.050617e-03

Joint ci ratio: 6.814243e-02	ci left: 3.882511e-03	ci right 4.157596e-03	k: 3295	n:820000
Cons ci ratio: 1.885513e-01	ci left: 4.771642e-04	ci right 5.776384e-04	k: 431	n:820000
KS ci ratio: 2.075499e-03	ci left: 8.122472e-01	ci right 8.139360e-01	k: 666736	n:820000
KNTC1   820000 perm   499 sec   (1644 perm/sec)   p_kst 8.130927e-01   p_cons 5.256098e-04   p_joint 4.018293e-03

Joint ci ratio: 6.772249e-02	ci left: 3.884292e-03	ci right 4.157741e-03	k: 3336	n:830000
Cons ci ratio: 1.883339e-01	ci left: 4.725631e-04	ci right 5.719406e-04	k: 432	n:830000
KS ci ratio: 2.062361e-03	ci left: 8.123405e-01	ci right 8.140188e-01	k: 674940	n:830000
KNTC1   830000 perm   508 sec   (1634 perm/sec)   p_kst 8.131807e-01   p_cons 5.204819e-04   p_joint 4.019277e-03

Joint ci ratio: 6.727024e-02	ci left: 3.890718e-03	ci right 4.162719e-03	k: 3381	n:840000
Cons ci ratio: 1.874701e-01	ci left: 4.714752e-04	ci right 5.701175e-04	k: 436	n:840000
KS ci ratio: 2.050440e-03	ci left: 8.122873e-01	ci right 8.139557e-01	k: 683023	n:840000
KNTC1   840000 perm   517 sec   (1625 perm/sec)   p_kst 8.131226e-01   p_cons 5.190476e-04   p_joint 4.025000e-03

Joint ci ratio: 6.943866e-02	ci left: 3.605559e-03	ci right 3.866076e-03	k: 3174	n:850000
Cons ci ratio: 1.868302e-01	ci left: 4.692924e-04	ci right 5.671049e-04	k: 439	n:850000
KS ci ratio: 2.037745e-03	ci left: 8.123816e-01	ci right 8.140398e-01	k: 691230	n:850000
KNTC1   850000 perm   526 sec   (1617 perm/sec)   p_kst 8.132118e-01   p_cons 5.164706e-04   p_joint 3.734118e-03

Joint ci ratio: 7.010820e-02	ci left: 3.495077e-03	ci right 3.750145e-03	k: 3114	n:860000
Cons ci ratio: 1.855691e-01	ci left: 4.704871e-04	ci right 5.678122e-04	k: 445	n:860000
KS ci ratio: 2.025980e-03	ci left: 8.123688e-01	ci right 8.140175e-01	k: 699347	n:860000
KNTC1   860000 perm   535 sec   (1608 perm/sec)   p_kst 8.131942e-01   p_cons 5.174419e-04   p_joint 3.620930e-03

Joint ci ratio: 6.549091e-02	ci left: 3.966806e-03	ci right 4.236513e-03	k: 3567	n:870000
Cons ci ratio: 1.843333e-01	ci left: 4.716565e-04	ci right 5.685011e-04	k: 451	n:870000
KS ci ratio: 2.086907e-03	ci left: 8.013579e-01	ci right 8.030332e-01	k: 697911	n:870000
KNTC1   870000 perm   545 sec   (1597 perm/sec)   p_kst 8.021966e-01   p_cons 5.183908e-04   p_joint 4.100000e-03

Joint ci ratio: 6.549244e-02	ci left: 3.921725e-03	ci right 4.188374e-03	k: 3567	n:880000
Cons ci ratio: 1.831218e-01	ci left: 4.728014e-04	ci right 5.691722e-04	k: 457	n:880000
KS ci ratio: 2.075469e-03	ci left: 8.012933e-01	ci right 8.029592e-01	k: 705872	n:880000
KNTC1   880000 perm   554 sec   (1589 perm/sec)   p_kst 8.021273e-01   p_cons 5.193182e-04   p_joint 4.053409e-03

Joint ci ratio: 6.504700e-02	ci left: 3.931819e-03	ci right 4.197267e-03	k: 3616	n:890000
Cons ci ratio: 1.813483e-01	ci left: 4.771402e-04	ci right 5.733500e-04	k: 466	n:890000
KS ci ratio: 2.064297e-03	ci left: 8.012178e-01	ci right 8.028746e-01	k: 713822	n:890000
KNTC1   890000 perm   563 sec   (1580 perm/sec)   p_kst 8.020472e-01   p_cons 5.235955e-04   p_joint 4.062921e-03

Joint ci ratio: 6.470808e-02	ci left: 3.929670e-03	ci right 4.193538e-03	k: 3654	n:900000
Cons ci ratio: 1.798144e-01	ci left: 4.803258e-04	ci right 5.762696e-04	k: 474	n:900000
KS ci ratio: 2.052498e-03	ci left: 8.012687e-01	ci right 8.029160e-01	k: 721884	n:900000
KNTC1   900000 perm   573 sec   (1571 perm/sec)   p_kst 8.020933e-01   p_cons 5.266667e-04   p_joint 4.060000e-03

Joint ci ratio: 6.434816e-02	ci left: 3.930814e-03	ci right 4.193237e-03	k: 3695	n:910000
Cons ci ratio: 1.786893e-01	ci left: 4.813451e-04	ci right 5.768259e-04	k: 480	n:910000
KS ci ratio: 2.041182e-03	ci left: 8.012744e-01	ci right 8.029127e-01	k: 729906	n:910000
KNTC1   910000 perm   582 sec   (1563 perm/sec)   p_kst 8.020945e-01   p_cons 5.274725e-04   p_joint 4.060440e-03

Joint ci ratio: 6.401998e-02	ci left: 3.928730e-03	ci right 4.189626e-03	k: 3733	n:920000
Cons ci ratio: 1.781348e-01	ci left: 4.792283e-04	ci right 5.739625e-04	k: 483	n:920000
KS ci ratio: 2.029877e-03	ci left: 8.013072e-01	ci right 8.029365e-01	k: 737953	n:920000
KNTC1   920000 perm   592 sec   (1555 perm/sec)   p_kst 8.021228e-01   p_cons 5.250000e-04   p_joint 4.057609e-03

Joint ci ratio: 6.400418e-02	ci left: 3.888599e-03	ci right 4.146764e-03	k: 3735	n:930000
Cons ci ratio: 1.779515e-01	ci left: 4.751026e-04	ci right 5.689141e-04	k: 484	n:930000
KS ci ratio: 2.018601e-03	ci left: 8.013642e-01	ci right 8.029845e-01	k: 746023	n:930000
KNTC1   930000 perm   602 sec   (1545 perm/sec)   p_kst 8.021753e-01   p_cons 5.204301e-04   p_joint 4.016129e-03

Joint ci ratio: 6.516266e-02	ci left: 3.710108e-03	ci right 3.961050e-03	k: 3604	n:940000
Cons ci ratio: 1.768608e-01	ci left: 4.761479e-04	ci right 5.695279e-04	k: 490	n:940000
KS ci ratio: 2.007672e-03	ci left: 8.013943e-01	ci right 8.030059e-01	k: 754069	n:940000
KNTC1   940000 perm   613 sec   (1535 perm/sec)   p_kst 8.022011e-01   p_cons 5.212766e-04   p_joint 3.834043e-03

Joint ci ratio: 6.198240e-02	ci left: 4.062650e-03	ci right 4.323545e-03	k: 3982	n:950000
Cons ci ratio: 1.761449e-01	ci left: 4.751603e-04	ci right 5.679293e-04	k: 494	n:950000
KS ci ratio: 1.997263e-03	ci left: 8.013691e-01	ci right 8.029722e-01	k: 762063	n:950000
KNTC1   950000 perm   622 sec   (1527 perm/sec)   p_kst 8.021716e-01   p_cons 5.200000e-04   p_joint 4.191579e-03

Joint ci ratio: 6.169665e-02	ci left: 4.058276e-03	ci right 4.317646e-03	k: 4019	n:960000
Cons ci ratio: 1.752620e-01	ci left: 4.751900e-04	ci right 5.674505e-04	k: 499	n:960000
KS ci ratio: 1.986538e-03	ci left: 8.014205e-01	ci right 8.030152e-01	k: 770130	n:960000
KNTC1   960000 perm   632 sec   (1519 perm/sec)   p_kst 8.022187e-01   p_cons 5.197917e-04   p_joint 4.186458e-03

Joint ci ratio: 6.104572e-02	ci left: 4.103741e-03	ci right 4.363151e-03	k: 4105	n:970000
Cons ci ratio: 1.747387e-01	ci left: 4.732484e-04	ci right 5.648287e-04	k: 502	n:970000
KS ci ratio: 1.991317e-03	ci left: 7.990033e-01	ci right 8.005970e-01	k: 775807	n:970000
KNTC1   970000 perm   642 sec   (1511 perm/sec)   p_kst 7.998010e-01   p_cons 5.175258e-04   p_joint 4.231959e-03

Joint ci ratio: 6.069183e-02	ci left: 4.110100e-03	ci right 4.368354e-03	k: 4153	n:980000
Cons ci ratio: 1.738767e-01	ci left: 4.732988e-04	ci right 5.643895e-04	k: 507	n:980000
KS ci ratio: 1.981308e-03	ci left: 7.989788e-01	ci right 8.005644e-01	k: 783777	n:980000
KNTC1   980000 perm   653 sec   (1502 perm/sec)   p_kst 7.997724e-01   p_cons 5.173469e-04   p_joint 4.237755e-03

Joint ci ratio: 6.112313e-02	ci left: 4.010884e-03	ci right 4.264758e-03	k: 4095	n:990000
Cons ci ratio: 1.730273e-01	ci left: 4.733492e-04	ci right 5.639582e-04	k: 512	n:990000
KS ci ratio: 1.970951e-03	ci left: 7.990357e-01	ci right 8.006131e-01	k: 791827	n:990000
KNTC1   990000 perm   663 sec   (1493 perm/sec)   p_kst 7.998253e-01   p_cons 5.171717e-04   p_joint 4.136364e-03

Joint ci ratio: 6.079737e-02	ci left: 4.014105e-03	ci right 4.266781e-03	k: 4139	n:1000000
Cons ci ratio: 1.716935e-01	ci left: 4.762707e-04	ci right 5.666633e-04	k: 520	n:1000000
KS ci ratio: 1.960999e-03	ci left: 7.990514e-01	ci right 8.006209e-01	k: 799837	n:1000000
KNTC1   1000000 perm   673 sec   (1486 perm/sec)   p_kst 7.998370e-01   p_cons 5.200000e-04   p_joint 4.139000e-03

Joint ci ratio: 6.054947e-02	ci left: 4.007513e-03	ci right 4.258710e-03	k: 4173	n:1010000
Cons ci ratio: 1.712015e-01	ci left: 4.743979e-04	ci right 5.641504e-04	k: 523	n:1010000
KS ci ratio: 1.950961e-03	ci left: 7.991055e-01	ci right 8.006670e-01	k: 807886	n:1010000
KNTC1   1010000 perm   683 sec   (1479 perm/sec)   p_kst 7.998871e-01   p_cons 5.178218e-04   p_joint 4.131683e-03

Joint ci ratio: 6.047075e-02	ci left: 3.978844e-03	ci right 4.227907e-03	k: 4184	n:1020000
Cons ci ratio: 1.705519e-01	ci left: 4.735008e-04	ci right 5.627087e-04	k: 527	n:1020000
KS ci ratio: 1.941469e-03	ci left: 7.990938e-01	ci right 8.006477e-01	k: 815869	n:1020000
KNTC1   1020000 perm   693 sec   (1472 perm/sec)   p_kst 7.998716e-01   p_cons 5.166667e-04   p_joint 4.101961e-03

Joint ci ratio: 6.018385e-02	ci left: 3.978463e-03	ci right 4.226280e-03	k: 4224	n:1030000
Cons ci ratio: 1.699096e-01	ci left: 4.726217e-04	ci right 5.612943e-04	k: 531	n:1030000
KS ci ratio: 1.932090e-03	ci left: 7.990862e-01	ci right 8.006325e-01	k: 823856	n:1030000
KNTC1   1030000 perm   703 sec   (1465 perm/sec)   p_kst 7.998602e-01   p_cons 5.155340e-04   p_joint 4.100971e-03

Joint ci ratio: 5.882355e-02	ci left: 4.126823e-03	ci right 4.377874e-03	k: 4421	n:1040000
Cons ci ratio: 1.688025e-01	ci left: 4.745228e-04	ci right 5.629130e-04	k: 538	n:1040000
KS ci ratio: 1.923105e-03	ci left: 7.990354e-01	ci right 8.005745e-01	k: 831798	n:1040000
KNTC1   1040000 perm   714 sec   (1457 perm/sec)   p_kst 7.998058e-01   p_cons 5.173077e-04   p_joint 4.250962e-03

Joint ci ratio: 5.912085e-02	ci left: 4.046228e-03	ci right 4.293662e-03	k: 4377	n:1050000
Cons ci ratio: 1.681797e-01	ci left: 4.736524e-04	ci right 5.615220e-04	k: 542	n:1050000
KS ci ratio: 1.914165e-03	ci left: 7.989990e-01	ci right 8.005308e-01	k: 839754	n:1050000
KNTC1   1050000 perm   724 sec   (1450 perm/sec)   p_kst 7.997657e-01   p_cons 5.161905e-04   p_joint 4.168571e-03

Joint ci ratio: 5.943638e-02	ci left: 3.965298e-03	ci right 4.209122e-03	k: 4331	n:1060000
Cons ci ratio: 1.669541e-01	ci left: 4.764147e-04	ci right 5.640879e-04	k: 550	n:1060000
KS ci ratio: 1.905152e-03	ci left: 7.989963e-01	ci right 8.005209e-01	k: 847745	n:1060000
KNTC1   1060000 perm   735 sec   (1443 perm/sec)   p_kst 7.997594e-01   p_cons 5.188679e-04   p_joint 4.085849e-03

Joint ci ratio: 5.701679e-02	ci left: 4.272704e-03	ci right 4.524383e-03	k: 4705	n:1070000
Cons ci ratio: 1.660524e-01	ci left: 4.773361e-04	ci right 5.646570e-04	k: 556	n:1070000
KS ci ratio: 1.896210e-03	ci left: 7.990031e-01	ci right 8.005205e-01	k: 855746	n:1070000
KNTC1   1070000 perm   745 sec   (1436 perm/sec)   p_kst 7.997626e-01   p_cons 5.196262e-04   p_joint 4.397196e-03

Joint ci ratio: 5.707890e-02	ci left: 4.224012e-03	ci right 4.473103e-03	k: 4695	n:1080000
Cons ci ratio: 1.654595e-01	ci left: 4.764664e-04	ci right 5.632859e-04	k: 560	n:1080000
KS ci ratio: 1.887190e-03	ci left: 7.990441e-01	ci right 8.005543e-01	k: 863784	n:1080000
KNTC1   1080000 perm   756 sec   (1429 perm/sec)   p_kst 7.998000e-01   p_cons 5.185185e-04   p_joint 4.347222e-03

Joint ci ratio: 5.699478e-02	ci left: 4.197919e-03	ci right 4.445094e-03	k: 4709	n:1090000
Cons ci ratio: 1.644366e-01	ci left: 4.782521e-04	ci right 5.648050e-04	k: 567	n:1090000
KS ci ratio: 1.878621e-03	ci left: 7.990292e-01	ci right 8.005325e-01	k: 871762	n:1090000
KNTC1   1090000 perm   766 sec   (1422 perm/sec)   p_kst 7.997817e-01   p_cons 5.201835e-04   p_joint 4.320183e-03

Joint ci ratio: 5.674838e-02	ci left: 4.196498e-03	ci right 4.442487e-03	k: 4750	n:1100000
Cons ci ratio: 1.631489e-01	ci left: 4.817508e-04	ci right 5.681872e-04	k: 576	n:1100000
KS ci ratio: 1.869764e-03	ci left: 7.990837e-01	ci right 8.005801e-01	k: 879816	n:1100000
KNTC1   1100000 perm   777 sec   (1415 perm/sec)   p_kst 7.998327e-01   p_cons 5.236364e-04   p_joint 4.318182e-03

Joint ci ratio: 5.671952e-02	ci left: 4.163131e-03	ci right 4.407035e-03	k: 4755	n:1110000
Cons ci ratio: 1.625864e-01	ci left: 4.808675e-04	ci right 5.668188e-04	k: 580	n:1110000
KS ci ratio: 1.861571e-03	ci left: 7.990444e-01	ci right 8.005342e-01	k: 887767	n:1110000
KNTC1   1110000 perm   788 sec   (1408 perm/sec)   p_kst 7.997901e-01   p_cons 5.225225e-04   p_joint 4.283784e-03

Joint ci ratio: 5.658932e-02	ci left: 4.145323e-03	ci right 4.387609e-03	k: 4777	n:1120000
Cons ci ratio: 1.617532e-01	ci left: 4.817137e-04	ci right 5.673322e-04	k: 586	n:1120000
KS ci ratio: 1.852889e-03	ci left: 7.991087e-01	ci right 8.005916e-01	k: 895833	n:1120000
KNTC1   1120000 perm   799 sec   (1401 perm/sec)   p_kst 7.998509e-01   p_cons 5.232143e-04   p_joint 4.265179e-03

Joint ci ratio: 5.655474e-02	ci left: 4.113872e-03	ci right 4.354167e-03	k: 4783	n:1130000
Cons ci ratio: 1.606619e-01	ci left: 4.842449e-04	ci right 5.696765e-04	k: 594	n:1130000
KS ci ratio: 1.844369e-03	ci left: 7.991647e-01	ci right 8.006409e-01	k: 903891	n:1130000
KNTC1   1130000 perm   810 sec   (1395 perm/sec)   p_kst 7.999035e-01   p_cons 5.256637e-04   p_joint 4.232743e-03

Joint ci ratio: 5.623795e-02	ci left: 4.124486e-03	ci right 4.364008e-03	k: 4837	n:1140000
Cons ci ratio: 1.597250e-01	ci left: 4.858914e-04	ci right 5.710656e-04	k: 601	n:1140000
KS ci ratio: 1.836298e-03	ci left: 7.991618e-01	ci right 8.006315e-01	k: 911883	n:1140000
KNTC1   1140000 perm   822 sec   (1388 perm/sec)   p_kst 7.998974e-01   p_cons 5.271930e-04   p_joint 4.242982e-03

Joint ci ratio: 5.620400e-02	ci left: 4.093763e-03	ci right 4.331353e-03	k: 4843	n:1150000
Cons ci ratio: 1.593287e-01	ci left: 4.841707e-04	ci right 5.688126e-04	k: 604	n:1150000
KS ci ratio: 1.828222e-03	ci left: 7.991781e-01	ci right 8.006413e-01	k: 919897	n:1150000
KNTC1   1150000 perm   833 sec   (1381 perm/sec)   p_kst 7.999104e-01   p_cons 5.252174e-04   p_joint 4.211304e-03

Joint ci ratio: 5.617010e-02	ci left: 4.063570e-03	ci right 4.299261e-03	k: 4849	n:1160000
Cons ci ratio: 1.591974e-01	ci left: 4.808245e-04	ci right 5.648056e-04	k: 605	n:1160000
KS ci ratio: 1.820354e-03	ci left: 7.991760e-01	ci right 8.006329e-01	k: 927890	n:1160000
KNTC1   1160000 perm   844 sec   (1374 perm/sec)   p_kst 7.999052e-01   p_cons 5.215517e-04   p_joint 4.180172e-03

Joint ci ratio: 5.425014e-02	ci left: 4.322185e-03	ci right 4.564039e-03	k: 5197	n:1170000
Cons ci ratio: 1.581567e-01	ci left: 4.832810e-04	ci right 5.670870e-04	k: 613	n:1170000
KS ci ratio: 1.812583e-03	ci left: 7.991748e-01	ci right 8.006255e-01	k: 935884	n:1170000
KNTC1   1170000 perm   856 sec   (1368 perm/sec)   p_kst 7.999009e-01   p_cons 5.239316e-04   p_joint 4.441880e-03

Joint ci ratio: 5.222127e-02	ci left: 4.628409e-03	ci right 4.877421e-03	k: 5607	n:1180000
Cons ci ratio: 1.575167e-01	ci left: 4.832554e-04	ci right 5.666857e-04	k: 618	n:1180000
KS ci ratio: 1.805005e-03	ci left: 7.991566e-01	ci right 8.006012e-01	k: 943858	n:1180000
KNTC1   1180000 perm   867 sec   (1361 perm/sec)   p_kst 7.998797e-01   p_cons 5.237288e-04   p_joint 4.751695e-03

Joint ci ratio: 5.201768e-02	ci left: 4.626008e-03	ci right 4.873891e-03	k: 5651	n:1190000
Cons ci ratio: 1.565084e-01	ci left: 4.856530e-04	ci right 5.689102e-04	k: 626	n:1190000
KS ci ratio: 1.797131e-03	ci left: 7.992086e-01	ci right 8.006470e-01	k: 951915	n:1190000
KNTC1   1190000 perm   879 sec   (1354 perm/sec)   p_kst 7.999286e-01   p_cons 5.260504e-04   p_joint 4.748739e-03

Joint ci ratio: 5.224207e-02	ci left: 4.547975e-03	ci right 4.792759e-03	k: 5603	n:1200000
Cons ci ratio: 1.555192e-01	ci left: 4.880123e-04	ci right 5.710959e-04	k: 634	n:1200000
KS ci ratio: 1.789801e-03	ci left: 7.991805e-01	ci right 8.006130e-01	k: 959877	n:1200000
KNTC1   1200000 perm   892 sec   (1345 perm/sec)   p_kst 7.998975e-01   p_cons 5.283333e-04   p_joint 4.669167e-03

Joint ci ratio: 5.235112e-02	ci left: 4.491625e-03	ci right 4.733896e-03	k: 5580	n:1210000
Cons ci ratio: 1.546689e-01	ci left: 4.895398e-04	ci right 5.723855e-04	k: 641	n:1210000
KS ci ratio: 1.782233e-03	ci left: 7.992117e-01	ci right 8.006381e-01	k: 967910	n:1210000
KNTC1   1210000 perm   904 sec   (1339 perm/sec)   p_kst 7.999256e-01   p_cons 5.297521e-04   p_joint 4.611570e-03

Joint ci ratio: 5.213670e-02	ci left: 4.492021e-03	ci right 4.733291e-03	k: 5626	n:1220000
Cons ci ratio: 1.544288e-01	ci left: 4.871031e-04	ci right 5.693966e-04	k: 643	n:1220000
KS ci ratio: 1.774819e-03	ci left: 7.992316e-01	ci right 8.006522e-01	k: 975930	n:1220000
KNTC1   1220000 perm   916 sec   (1332 perm/sec)   p_kst 7.999426e-01   p_cons 5.270492e-04   p_joint 4.611475e-03

Joint ci ratio: 5.190652e-02	ci left: 4.495622e-03	ci right 4.735988e-03	k: 5676	n:1230000
Cons ci ratio: 1.535962e-01	ci left: 4.886147e-04	ci right 5.706775e-04	k: 650	n:1230000
KS ci ratio: 1.767569e-03	ci left: 7.992383e-01	ci right 8.006530e-01	k: 983934	n:1230000
KNTC1   1230000 perm   928 sec   (1326 perm/sec)   p_kst 7.999463e-01   p_cons 5.284553e-04   p_joint 4.614634e-03

Joint ci ratio: 5.182959e-02	ci left: 4.472898e-03	ci right 4.711684e-03	k: 5693	n:1240000
Cons ci ratio: 1.528932e-01	ci left: 4.893274e-04	ci right 5.710994e-04	k: 656	n:1240000
KS ci ratio: 1.760474e-03	ci left: 7.992327e-01	ci right 8.006417e-01	k: 991923	n:1240000
KNTC1   1240000 perm   940 sec   (1320 perm/sec)   p_kst 7.999379e-01   p_cons 5.290323e-04   p_joint 4.591129e-03

Joint ci ratio: 5.162149e-02	ci left: 4.473439e-03	ci right 4.711266e-03	k: 5739	n:1250000
Cons ci ratio: 1.524299e-01	ci left: 4.884905e-04	ci right 5.698528e-04	k: 660	n:1250000
KS ci ratio: 1.753314e-03	ci left: 7.992544e-01	ci right 8.006578e-01	k: 999946	n:1250000
KNTC1   1250000 perm   952 sec   (1314 perm/sec)   p_kst 7.999568e-01   p_cons 5.280000e-04   p_joint 4.591200e-03

Joint ci ratio: 5.146952e-02	ci left: 4.464571e-03	ci right 4.701207e-03	k: 5773	n:1260000
Cons ci ratio: 1.512896e-01	ci left: 4.922486e-04	ci right 5.735679e-04	k: 670	n:1260000
KS ci ratio: 1.746211e-03	ci left: 7.992814e-01	ci right 8.006791e-01	k: 1007976	n:1260000
KNTC1   1260000 perm   964 sec   (1308 perm/sec)   p_kst 7.999810e-01   p_cons 5.317460e-04   p_joint 4.581746e-03

Joint ci ratio: 5.149286e-02	ci left: 4.425528e-03	ci right 4.660205e-03	k: 5768	n:1270000
Cons ci ratio: 1.505064e-01	ci left: 4.936764e-04	ci right 5.747714e-04	k: 677	n:1270000
KS ci ratio: 1.739189e-03	ci left: 7.993088e-01	ci right 8.007009e-01	k: 1016007	n:1270000
KNTC1   1270000 perm   976 sec   (1302 perm/sec)   p_kst 8.000055e-01   p_cons 5.330709e-04   p_joint 4.541732e-03

Joint ci ratio: 5.152519e-02	ci left: 4.385553e-03	ci right 4.618260e-03	k: 5761	n:1280000
Cons ci ratio: 1.502851e-01	ci left: 4.913232e-04	ci right 5.719023e-04	k: 679	n:1280000
KS ci ratio: 1.732391e-03	ci left: 7.993099e-01	ci right 8.006966e-01	k: 1024005	n:1280000
KNTC1   1280000 perm   988 sec   (1295 perm/sec)   p_kst 8.000039e-01   p_cons 5.304688e-04   p_joint 4.500781e-03

Joint ci ratio: 5.144096e-02	ci left: 4.366095e-03	ci right 4.597379e-03	k: 5780	n:1290000
Cons ci ratio: 1.498451e-01	ci left: 4.904988e-04	ci right 5.706861e-04	k: 683	n:1290000
KS ci ratio: 1.725279e-03	ci left: 7.993840e-01	ci right 8.007651e-01	k: 1032097	n:1290000
KNTC1   1290000 perm   1001 sec   (1288 perm/sec)   p_kst 8.000752e-01   p_cons 5.294574e-04   p_joint 4.480620e-03

Joint ci ratio: 5.145080e-02	ci left: 4.330989e-03	ci right 4.560459e-03	k: 5778	n:1300000
Cons ci ratio: 1.494090e-01	ci left: 4.896875e-04	ci right 5.694882e-04	k: 687	n:1300000
KS ci ratio: 1.718662e-03	ci left: 7.993807e-01	ci right 8.007565e-01	k: 1040090	n:1300000
KNTC1   1300000 perm   1016 sec   (1279 perm/sec)   p_kst 8.000692e-01   p_cons 5.284615e-04   p_joint 4.444615e-03

Joint ci ratio: 5.180857e-02	ci left: 4.238396e-03	ci right 4.464568e-03	k: 5699	n:1310000
Cons ci ratio: 1.487617e-01	ci left: 4.903587e-04	ci right 5.698918e-04	k: 693	n:1310000
KS ci ratio: 1.712248e-03	ci left: 7.993537e-01	ci right 8.007243e-01	k: 1048052	n:1310000
KNTC1   1310000 perm   1029 sec   (1273 perm/sec)   p_kst 8.000397e-01   p_cons 5.290076e-04   p_joint 4.350382e-03

Joint ci ratio: 5.172746e-02	ci left: 4.219745e-03	ci right 4.444559e-03	k: 5717	n:1320000
Cons ci ratio: 1.480170e-01	ci left: 4.917500e-04	ci right 5.710742e-04	k: 700	n:1320000
KS ci ratio: 1.706067e-03	ci left: 7.992969e-01	ci right 8.006624e-01	k: 1055974	n:1320000
KNTC1   1320000 perm   1042 sec   (1267 perm/sec)   p_kst 7.999803e-01   p_cons 5.303030e-04   p_joint 4.331061e-03

Joint ci ratio: 5.511749e-02	ci left: 3.684276e-03	ci right 3.893834e-03	k: 5038	n:1330000
Cons ci ratio: 1.469721e-01	ci left: 4.952941e-04	ci right 5.745764e-04	k: 710	n:1330000
KS ci ratio: 1.699560e-03	ci left: 7.993147e-01	ci right 8.006750e-01	k: 1063994	n:1330000
KNTC1   1330000 perm   1054 sec   (1261 perm/sec)   p_kst 7.999955e-01   p_cons 5.338346e-04   p_joint 3.787970e-03

Joint ci ratio: 5.528925e-02	ci left: 3.633963e-03	ci right 3.841325e-03	k: 5007	n:1340000
Cons ci ratio: 1.461521e-01	ci left: 4.973491e-04	ci right 5.764774e-04	k: 718	n:1340000
KS ci ratio: 1.693341e-03	ci left: 7.992918e-01	ci right 8.006472e-01	k: 1071960	n:1340000
KNTC1   1340000 perm   1067 sec   (1256 perm/sec)   p_kst 7.999701e-01   p_cons 5.358209e-04   p_joint 3.736567e-03

Joint ci ratio: 5.531774e-02	ci left: 3.603391e-03	ci right 3.809118e-03	k: 5002	n:1350000
Cons ci ratio: 1.457473e-01	ci left: 4.965198e-04	ci right 5.752783e-04	k: 722	n:1350000
KS ci ratio: 1.687162e-03	ci left: 7.992745e-01	ci right 8.006249e-01	k: 1079933	n:1350000
KNTC1   1350000 perm   1080 sec   (1250 perm/sec)   p_kst 7.999504e-01   p_cons 5.348148e-04   p_joint 3.705185e-03

Joint ci ratio: 5.510334e-02	ci left: 3.605176e-03	ci right 3.810182e-03	k: 5041	n:1360000
Cons ci ratio: 1.454460e-01	ci left: 4.949944e-04	ci right 5.733346e-04	k: 725	n:1360000
KS ci ratio: 1.681038e-03	ci left: 7.992597e-01	ci right 8.006052e-01	k: 1087909	n:1360000
KNTC1   1360000 perm   1093 sec   (1244 perm/sec)   p_kst 7.999331e-01   p_cons 5.330882e-04   p_joint 3.706618e-03

Joint ci ratio: 5.541939e-02	ci left: 3.537827e-03	ci right 3.740193e-03	k: 4984	n:1370000
Cons ci ratio: 1.446510e-01	ci left: 4.970088e-04	ci right 5.752008e-04	k: 733	n:1370000
KS ci ratio: 1.770531e-03	ci left: 7.808729e-01	ci right 7.822573e-01	k: 1070745	n:1370000
KNTC1   1370000 perm   1107 sec   (1238 perm/sec)   p_kst 7.815657e-01   p_cons 5.350365e-04   p_joint 3.637956e-03

Joint ci ratio: 5.536442e-02	ci left: 3.519335e-03	ci right 3.720438e-03	k: 4994	n:1380000
Cons ci ratio: 1.444545e-01	ci left: 4.948041e-04	ci right 5.725344e-04	k: 735	n:1380000
KS ci ratio: 1.764197e-03	ci left: 7.808575e-01	ci right 7.822370e-01	k: 1078536	n:1380000
KNTC1   1380000 perm   1120 sec   (1232 perm/sec)   p_kst 7.815478e-01   p_cons 5.326087e-04   p_joint 3.618841e-03

Joint ci ratio: 5.511653e-02	ci left: 3.525944e-03	ci right 3.726493e-03	k: 5039	n:1390000
Cons ci ratio: 1.437724e-01	ci left: 4.960988e-04	ci right 5.736328e-04	k: 742	n:1390000
KS ci ratio: 1.757900e-03	ci left: 7.808481e-01	ci right 7.822227e-01	k: 1086335	n:1390000
KNTC1   1390000 perm   1134 sec   (1226 perm/sec)   p_kst 7.815360e-01   p_cons 5.338129e-04   p_joint 3.625180e-03

Joint ci ratio: 5.495878e-02	ci left: 3.521187e-03	ci right 3.720875e-03	k: 5068	n:1400000
Cons ci ratio: 1.435794e-01	ci left: 4.939324e-04	ci right 5.710154e-04	k: 744	n:1400000
KS ci ratio: 1.751619e-03	ci left: 7.808489e-01	ci right 7.822185e-01	k: 1094148	n:1400000
KNTC1   1400000 perm   1148 sec   (1220 perm/sec)   p_kst 7.815343e-01   p_cons 5.314286e-04   p_joint 3.620000e-03

Joint ci ratio: 5.472165e-02	ci left: 3.526993e-03	ci right 3.726119e-03	k: 5112	n:1410000
Cons ci ratio: 1.431956e-01	ci left: 4.931645e-04	ci right 5.699042e-04	k: 748	n:1410000
KS ci ratio: 1.745521e-03	ci left: 7.808269e-01	ci right 7.821918e-01	k: 1101929	n:1410000
KNTC1   1410000 perm   1161 sec   (1214 perm/sec)   p_kst 7.815099e-01   p_cons 5.304965e-04   p_joint 3.625532e-03

Joint ci ratio: 5.477075e-02	ci left: 3.495902e-03	ci right 3.693455e-03	k: 5103	n:1420000
Cons ci ratio: 1.429098e-01	ci left: 4.917285e-04	ci right 5.680791e-04	k: 751	n:1420000
KS ci ratio: 1.739304e-03	ci left: 7.808413e-01	ci right 7.822012e-01	k: 1109761	n:1420000
KNTC1   1420000 perm   1175 sec   (1209 perm/sec)   p_kst 7.815218e-01   p_cons 5.288732e-04   p_joint 3.593662e-03

Joint ci ratio: 5.473378e-02	ci left: 3.476282e-03	ci right 3.672590e-03	k: 5110	n:1430000
Cons ci ratio: 1.424371e-01	ci left: 4.916615e-04	ci right 5.677278e-04	k: 756	n:1430000
KS ci ratio: 1.733383e-03	ci left: 7.808099e-01	ci right 7.821652e-01	k: 1117528	n:1430000
KNTC1   1430000 perm   1189 sec   (1202 perm/sec)   p_kst 7.814881e-01   p_cons 5.286713e-04   p_joint 3.573427e-03

Joint ci ratio: 5.462197e-02	ci left: 3.466525e-03	ci right 3.661869e-03	k: 5131	n:1440000
Cons ci ratio: 1.418759e-01	ci left: 4.922657e-04	ci right 5.680999e-04	k: 762	n:1440000
KS ci ratio: 1.727174e-03	ci left: 7.808478e-01	ci right 7.821983e-01	k: 1125394	n:1440000
KNTC1   1440000 perm   1203 sec   (1197 perm/sec)   p_kst 7.815236e-01   p_cons 5.291667e-04   p_joint 3.563194e-03

Joint ci ratio: 5.442081e-02	ci left: 3.468467e-03	ci right 3.663179e-03	k: 5169	n:1450000
Cons ci ratio: 1.408638e-01	ci left: 4.961887e-04	ci right 5.720363e-04	k: 773	n:1450000
KS ci ratio: 1.720830e-03	ci left: 7.809252e-01	ci right 7.822709e-01	k: 1133318	n:1450000
KNTC1   1450000 perm   1217 sec   (1192 perm/sec)   p_kst 7.815986e-01   p_cons 5.331034e-04   p_joint 3.564828e-03

Joint ci ratio: 5.423755e-02	ci left: 3.468358e-03	ci right 3.662387e-03	k: 5204	n:1460000
Cons ci ratio: 1.405917e-01	ci left: 4.947726e-04	ci right 5.702454e-04	k: 776	n:1460000
KS ci ratio: 1.715226e-03	ci left: 7.808679e-01	ci right 7.822091e-01	k: 1141047	n:1460000
KNTC1   1460000 perm   1230 sec   (1187 perm/sec)   p_kst 7.815390e-01   p_cons 5.315068e-04   p_joint 3.564384e-03

Joint ci ratio: 5.401992e-02	ci left: 3.472948e-03	ci right 3.666431e-03	k: 5246	n:1470000
Cons ci ratio: 1.400520e-01	ci left: 4.953451e-04	ci right 5.705910e-04	k: 782	n:1470000
KS ci ratio: 1.709376e-03	ci left: 7.808713e-01	ci right 7.822079e-01	k: 1148864	n:1470000
KNTC1   1470000 perm   1245 sec   (1181 perm/sec)   p_kst 7.815401e-01   p_cons 5.319728e-04   p_joint 3.568707e-03

Joint ci ratio: 5.381510e-02	ci left: 3.476145e-03	ci right 3.669049e-03	k: 5286	n:1480000
Cons ci ratio: 1.396070e-01	ci left: 4.952584e-04	ci right 5.702321e-04	k: 787	n:1480000
KS ci ratio: 1.703694e-03	ci left: 7.808530e-01	ci right 7.821851e-01	k: 1156649	n:1480000
KNTC1   1480000 perm   1259 sec   (1176 perm/sec)   p_kst 7.815196e-01   p_cons 5.317568e-04   p_joint 3.571622e-03

Joint ci ratio: 5.265401e-02	ci left: 3.608441e-03	ci right 3.804234e-03	k: 5521	n:1490000
Cons ci ratio: 1.389909e-01	ci left: 4.964688e-04	ci right 5.712666e-04	k: 794	n:1490000
KS ci ratio: 1.697811e-03	ci left: 7.808867e-01	ci right 7.822142e-01	k: 1164511	n:1490000
KNTC1   1490000 perm   1273 sec   (1171 perm/sec)   p_kst 7.815510e-01   p_cons 5.328859e-04   p_joint 3.705369e-03

Joint ci ratio: 5.254494e-02	ci left: 3.599516e-03	ci right 3.794408e-03	k: 5544	n:1500000
Cons ci ratio: 1.382967e-01	ci left: 4.983074e-04	ci right 5.729764e-04	k: 802	n:1500000
KS ci ratio: 1.692150e-03	ci left: 7.808872e-01	ci right 7.822104e-01	k: 1172324	n:1500000
KNTC1   1500000 perm   1287 sec   (1166 perm/sec)   p_kst 7.815493e-01   p_cons 5.346667e-04   p_joint 3.696000e-03

Joint ci ratio: 5.266967e-02	ci left: 3.558684e-03	ci right 3.751837e-03	k: 5518	n:1510000
Cons ci ratio: 1.379536e-01	ci left: 4.975648e-04	ci right 5.719223e-04	k: 806	n:1510000
KS ci ratio: 1.686634e-03	ci left: 7.808699e-01	ci right 7.821887e-01	k: 1180110	n:1510000
KNTC1   1510000 perm   1301 sec   (1160 perm/sec)   p_kst 7.815298e-01   p_cons 5.337748e-04   p_joint 3.654305e-03

Joint ci ratio: 5.252722e-02	ci left: 3.554749e-03	ci right 3.747150e-03	k: 5548	n:1520000
Cons ci ratio: 1.376980e-01	ci left: 4.961969e-04	ci right 5.702014e-04	k: 809	n:1520000
KS ci ratio: 1.681091e-03	ci left: 7.808692e-01	ci right 7.821837e-01	k: 1187921	n:1520000
KNTC1   1520000 perm   1315 sec   (1156 perm/sec)   p_kst 7.815270e-01   p_cons 5.322368e-04   p_joint 3.650000e-03

Joint ci ratio: 4.887439e-02	ci left: 4.084580e-03	ci right 4.289853e-03	k: 6405	n:1530000
Cons ci ratio: 1.369392e-01	ci left: 4.986341e-04	ci right 5.725589e-04	k: 818	n:1530000
KS ci ratio: 1.675345e-03	ci left: 7.809209e-01	ci right 7.822310e-01	k: 1195812	n:1530000
KNTC1   1530000 perm   1330 sec   (1151 perm/sec)   p_kst 7.815765e-01   p_cons 5.346405e-04   p_joint 4.186275e-03

Joint ci ratio: 4.869979e-02	ci left: 4.087563e-03	ci right 4.292231e-03	k: 6451	n:1540000
Cons ci ratio: 1.362751e-01	ci left: 5.004136e-04	ci right 5.742131e-04	k: 826	n:1540000
KS ci ratio: 1.669684e-03	ci left: 7.809668e-01	ci right 7.822724e-01	k: 1203695	n:1540000
KNTC1   1540000 perm   1344 sec   (1146 perm/sec)   p_kst 7.816201e-01   p_cons 5.363636e-04   p_joint 4.188961e-03

Joint ci ratio: 4.907613e-02	ci left: 3.998734e-03	ci right 4.200545e-03	k: 6353	n:1550000
Cons ci ratio: 1.360287e-01	ci left: 4.990546e-04	ci right 5.725099e-04	k: 829	n:1550000
KS ci ratio: 1.664167e-03	ci left: 7.809939e-01	ci right 7.822953e-01	k: 1211550	n:1550000
KNTC1   1550000 perm   1358 sec   (1141 perm/sec)   p_kst 7.816452e-01   p_cons 5.348387e-04   p_joint 4.098710e-03

Joint ci ratio: 4.890320e-02	ci left: 4.001594e-03	ci right 4.202818e-03	k: 6398	n:1560000
Cons ci ratio: 1.351359e-01	ci left: 5.026677e-04	ci right 5.761302e-04	k: 840	n:1560000
KS ci ratio: 1.658732e-03	ci left: 7.810150e-01	ci right 7.823122e-01	k: 1219396	n:1560000
KNTC1   1560000 perm   1374 sec   (1135 perm/sec)   p_kst 7.816641e-01   p_cons 5.384615e-04   p_joint 4.101282e-03

Joint ci ratio: 4.897306e-02	ci left: 3.964780e-03	ci right 4.164445e-03	k: 6380	n:1570000
Cons ci ratio: 1.348158e-01	ci left: 5.019277e-04	ci right 5.750944e-04	k: 844	n:1570000
KS ci ratio: 1.653560e-03	ci left: 7.809924e-01	ci right 7.822855e-01	k: 1227174	n:1570000
KNTC1   1570000 perm   1390 sec   (1129 perm/sec)   p_kst 7.816395e-01   p_cons 5.375796e-04   p_joint 4.063694e-03

Joint ci ratio: 4.929664e-02	ci left: 3.887796e-03	ci right 4.084915e-03	k: 6297	n:1580000
Cons ci ratio: 1.341820e-01	ci left: 5.036439e-04	ci right 5.766881e-04	k: 852	n:1580000
KS ci ratio: 1.648192e-03	ci left: 7.810208e-01	ci right 7.823098e-01	k: 1235032	n:1580000
KNTC1   1580000 perm   1406 sec   (1124 perm/sec)   p_kst 7.816658e-01   p_cons 5.392405e-04   p_joint 3.985443e-03

Joint ci ratio: 5.060460e-02	ci left: 3.664589e-03	ci right 3.855464e-03	k: 5977	n:1590000
Cons ci ratio: 1.338685e-01	ci left: 5.029077e-04	ci right 5.756611e-04	k: 856	n:1590000
KS ci ratio: 1.643097e-03	ci left: 7.810029e-01	ci right 7.822879e-01	k: 1242817	n:1590000
KNTC1   1590000 perm   1421 sec   (1119 perm/sec)   p_kst 7.816459e-01   p_cons 5.383648e-04   p_joint 3.759119e-03

Joint ci ratio: 5.042770e-02	ci left: 3.667604e-03	ci right 3.857949e-03	k: 6019	n:1600000
Cons ci ratio: 1.332479e-01	ci left: 5.045975e-04	ci right 5.772302e-04	k: 864	n:1600000
KS ci ratio: 1.637665e-03	ci left: 7.810654e-01	ci right 7.823461e-01	k: 1250730	n:1600000
KNTC1   1600000 perm   1436 sec   (1114 perm/sec)   p_kst 7.817063e-01   p_cons 5.400000e-04   p_joint 3.761875e-03

Joint ci ratio: 5.024431e-02	ci left: 3.671809e-03	ci right 3.861660e-03	k: 6063	n:1610000
Cons ci ratio: 1.326359e-01	ci left: 5.062671e-04	ci right 5.787790e-04	k: 872	n:1610000
KS ci ratio: 1.632559e-03	ci left: 7.810698e-01	ci right 7.823466e-01	k: 1258551	n:1610000
KNTC1   1610000 perm   1451 sec   (1109 perm/sec)   p_kst 7.817087e-01   p_cons 5.416149e-04   p_joint 3.765839e-03

Joint ci ratio: 5.030322e-02	ci left: 3.640609e-03	ci right 3.829073e-03	k: 6049	n:1620000
Cons ci ratio: 1.318078e-01	ci left: 5.097076e-04	ci right 5.822208e-04	k: 883	n:1620000
KS ci ratio: 1.627460e-03	ci left: 7.810828e-01	ci right 7.823557e-01	k: 1266386	n:1620000
KNTC1   1620000 perm   1466 sec   (1105 perm/sec)   p_kst 7.817198e-01   p_cons 5.450617e-04   p_joint 3.733951e-03

Joint ci ratio: 4.908885e-02	ci left: 3.801256e-03	ci right 3.993151e-03	k: 6351	n:1630000
Cons ci ratio: 1.313628e-01	ci left: 5.101403e-04	ci right 5.824510e-04	k: 889	n:1630000
KS ci ratio: 1.622498e-03	ci left: 7.810767e-01	ci right 7.823456e-01	k: 1274190	n:1630000
KNTC1   1630000 perm   1482 sec   (1100 perm/sec)   p_kst 7.817117e-01   p_cons 5.453988e-04   p_joint 3.896319e-03

Joint ci ratio: 4.895037e-02	ci left: 3.799760e-03	ci right 3.991023e-03	k: 6387	n:1640000
Cons ci ratio: 1.307762e-01	ci left: 5.117479e-04	ci right 5.839373e-04	k: 897	n:1640000
KS ci ratio: 1.617637e-03	ci left: 7.810590e-01	ci right 7.823241e-01	k: 1281975	n:1640000
KNTC1   1640000 perm   1497 sec   (1095 perm/sec)   p_kst 7.816921e-01   p_cons 5.469512e-04   p_joint 3.894512e-03

Joint ci ratio: 4.883215e-02	ci left: 3.795289e-03	ci right 3.985853e-03	k: 6418	n:1650000
Cons ci ratio: 1.302694e-01	ci left: 5.127503e-04	ci right 5.847791e-04	k: 904	n:1650000
KS ci ratio: 1.612725e-03	ci left: 7.810616e-01	ci right 7.823229e-01	k: 1289793	n:1650000
KNTC1   1650000 perm   1513 sec   (1091 perm/sec)   p_kst 7.816927e-01   p_cons 5.478788e-04   p_joint 3.889697e-03

Joint ci ratio: 4.869204e-02	ci left: 3.794443e-03	ci right 3.984403e-03	k: 6455	n:1660000
Cons ci ratio: 1.299111e-01	ci left: 5.125754e-04	ci right 5.843664e-04	k: 909	n:1660000
KS ci ratio: 1.607726e-03	ci left: 7.810919e-01	ci right 7.823493e-01	k: 1297657	n:1660000
KNTC1   1660000 perm   1528 sec   (1086 perm/sec)   p_kst 7.817211e-01   p_cons 5.475904e-04   p_joint 3.888554e-03

Joint ci ratio: 4.857192e-02	ci left: 3.790650e-03	ci right 3.979939e-03	k: 6487	n:1670000
Cons ci ratio: 1.296265e-01	ci left: 5.118236e-04	ci right 5.833401e-04	k: 913	n:1670000
KS ci ratio: 1.602864e-03	ci left: 7.811027e-01	ci right 7.823562e-01	k: 1305489	n:1670000
KNTC1   1670000 perm   1544 sec   (1082 perm/sec)   p_kst 7.817299e-01   p_cons 5.467066e-04   p_joint 3.884431e-03

Joint ci ratio: 4.837824e-02	ci left: 3.798664e-03	ci right 3.987576e-03	k: 6539	n:1680000
Cons ci ratio: 1.292031e-01	ci left: 5.122328e-04	ci right 5.835548e-04	k: 919	n:1680000
KS ci ratio: 1.598129e-03	ci left: 7.810954e-01	ci right 7.823453e-01	k: 1313291	n:1680000
KNTC1   1680000 perm   1559 sec   (1077 perm/sec)   p_kst 7.817208e-01   p_cons 5.470238e-04   p_joint 3.892262e-03

Joint ci ratio: 4.826042e-02	ci left: 3.794893e-03	ci right 3.983145e-03	k: 6571	n:1690000
Cons ci ratio: 1.286449e-01	ci left: 5.137829e-04	ci right 5.849881e-04	k: 927	n:1690000
KS ci ratio: 1.593546e-03	ci left: 7.810646e-01	ci right 7.823108e-01	k: 1321053	n:1690000
KNTC1   1690000 perm   1575 sec   (1073 perm/sec)   p_kst 7.816882e-01   p_cons 5.485207e-04   p_joint 3.888166e-03

Joint ci ratio: 4.820210e-02	ci left: 3.781868e-03	ci right 3.969240e-03	k: 6587	n:1700000
Cons ci ratio: 1.280939e-01	ci left: 5.153155e-04	ci right 5.864039e-04	k: 935	n:1700000
KS ci ratio: 1.588945e-03	ci left: 7.810465e-01	ci right 7.822891e-01	k: 1328836	n:1700000
KNTC1   1700000 perm   1590 sec   (1069 perm/sec)   p_kst 7.816682e-01   p_cons 5.500000e-04   p_joint 3.874706e-03

Joint ci ratio: 4.846553e-02	ci left: 3.718730e-03	ci right 3.904009e-03	k: 6516	n:1710000
Cons ci ratio: 1.277531e-01	ci left: 5.151323e-04	ci right 5.859922e-04	k: 940	n:1710000
KS ci ratio: 1.584332e-03	ci left: 7.810397e-01	ci right 7.822787e-01	k: 1336638	n:1710000
KNTC1   1710000 perm   1606 sec   (1065 perm/sec)   p_kst 7.816596e-01   p_cons 5.497076e-04   p_joint 3.810526e-03

Joint ci ratio: 4.830635e-02	ci left: 3.721807e-03	ci right 3.906614e-03	k: 6559	n:1720000
Cons ci ratio: 1.275501e-01	ci left: 5.138259e-04	ci right 5.843851e-04	k: 943	n:1720000
KS ci ratio: 1.579807e-03	ci left: 7.810225e-01	ci right 7.822579e-01	k: 1344422	n:1720000
KNTC1   1720000 perm   1622 sec   (1060 perm/sec)   p_kst 7.816407e-01   p_cons 5.482558e-04   p_joint 3.813372e-03

Joint ci ratio: 4.623377e-02	ci left: 4.042461e-03	ci right 4.234349e-03	k: 7158	n:1730000
Cons ci ratio: 1.268797e-01	ci left: 5.164522e-04	ci right 5.869713e-04	k: 953	n:1730000
KS ci ratio: 1.575084e-03	ci left: 7.810571e-01	ci right 7.822888e-01	k: 1352295	n:1730000
KNTC1   1730000 perm   1639 sec   (1056 perm/sec)   p_kst 7.816734e-01   p_cons 5.508671e-04   p_joint 4.137572e-03

Joint ci ratio: 4.611481e-02	ci left: 4.040248e-03	ci right 4.231524e-03	k: 7195	n:1740000
Cons ci ratio: 1.267470e-01	ci left: 5.145970e-04	ci right 5.847838e-04	k: 955	n:1740000
KS ci ratio: 1.570506e-03	ci left: 7.810688e-01	ci right 7.822970e-01	k: 1360129	n:1740000
KNTC1   1740000 perm   1655 sec   (1052 perm/sec)   p_kst 7.816833e-01   p_cons 5.488506e-04   p_joint 4.135057e-03

Joint ci ratio: 4.601914e-02	ci left: 4.034106e-03	ci right 4.224684e-03	k: 7225	n:1750000
Cons ci ratio: 1.263511e-01	ci left: 5.149765e-04	ci right 5.849792e-04	k: 961	n:1750000
KS ci ratio: 1.565967e-03	ci left: 7.810803e-01	ci right 7.823050e-01	k: 1367963	n:1750000
KNTC1   1750000 perm   1671 sec   (1047 perm/sec)   p_kst 7.816931e-01   p_cons 5.491429e-04   p_joint 4.128571e-03

Joint ci ratio: 4.587013e-02	ci left: 4.037582e-03	ci right 4.227691e-03	k: 7272	n:1760000
Cons ci ratio: 1.260893e-01	ci left: 5.142515e-04	ci right 5.840000e-04	k: 965	n:1760000
KS ci ratio: 1.561418e-03	ci left: 7.811026e-01	ci right 7.823237e-01	k: 1375816	n:1760000
KNTC1   1760000 perm   1687 sec   (1043 perm/sec)   p_kst 7.817136e-01   p_cons 5.482955e-04   p_joint 4.131818e-03

Joint ci ratio: 4.589285e-02	ci left: 4.010861e-03	ci right 4.199807e-03	k: 7265	n:1770000
Cons ci ratio: 1.255059e-01	ci left: 5.162709e-04	ci right 5.859452e-04	k: 974	n:1770000
KS ci ratio: 1.556855e-03	ci left: 7.811365e-01	ci right 7.823541e-01	k: 1383690	n:1770000
KNTC1   1770000 perm   1704 sec   (1039 perm/sec)   p_kst 7.817458e-01   p_cons 5.502825e-04   p_joint 4.104520e-03

Joint ci ratio: 4.744258e-02	ci left: 3.730126e-03	ci right 3.911944e-03	k: 6800	n:1780000
Cons ci ratio: 1.251853e-01	ci left: 5.160914e-04	ci right 5.855504e-04	k: 979	n:1780000
KS ci ratio: 1.552405e-03	ci left: 7.811537e-01	ci right 7.823679e-01	k: 1391535	n:1780000
KNTC1   1780000 perm   1720 sec   (1035 perm/sec)   p_kst 7.817612e-01   p_cons 5.500000e-04   p_joint 3.820225e-03

Joint ci ratio: 4.733840e-02	ci left: 3.725848e-03	ci right 3.907048e-03	k: 6830	n:1790000
Cons ci ratio: 1.248672e-01	ci left: 5.159141e-04	ci right 5.851597e-04	k: 984	n:1790000
KS ci ratio: 1.548008e-03	ci left: 7.811674e-01	ci right 7.823781e-01	k: 1399374	n:1790000
KNTC1   1790000 perm   1737 sec   (1031 perm/sec)   p_kst 7.817732e-01   p_cons 5.497207e-04   p_joint 3.815642e-03

Joint ci ratio: 4.729722e-02	ci left: 3.711736e-03	ci right 3.892088e-03	k: 6842	n:1800000
Cons ci ratio: 1.245515e-01	ci left: 5.157390e-04	ci right 5.847732e-04	k: 989	n:1800000
KS ci ratio: 1.543787e-03	ci left: 7.811503e-01	ci right 7.823577e-01	k: 1407158	n:1800000
KNTC1   1800000 perm   1753 sec   (1027 perm/sec)   p_kst 7.817544e-01   p_cons 5.494444e-04   p_joint 3.801111e-03

Joint ci ratio: 4.713550e-02	ci left: 3.716890e-03	ci right 3.896858e-03	k: 6889	n:1810000
Cons ci ratio: 1.241134e-01	ci left: 5.166368e-04	ci right 5.855301e-04	k: 996	n:1810000
KS ci ratio: 1.539720e-03	ci left: 7.811069e-01	ci right 7.823110e-01	k: 1414894	n:1810000
KNTC1   1810000 perm   1770 sec   (1023 perm/sec)   p_kst 7.817094e-01   p_cons 5.502762e-04   p_joint 3.806077e-03

Joint ci ratio: 4.696864e-02	ci left: 3.723074e-03	ci right 3.902686e-03	k: 6938	n:1820000
Cons ci ratio: 1.236799e-01	ci left: 5.175251e-04	ci right 5.862781e-04	k: 1003	n:1820000
KS ci ratio: 1.535600e-03	ci left: 7.810826e-01	ci right 7.822835e-01	k: 1422664	n:1820000
KNTC1   1820000 perm   1786 sec   (1019 perm/sec)   p_kst 7.816835e-01   p_cons 5.510989e-04   p_joint 3.812088e-03

Joint ci ratio: 4.682036e-02	ci left: 3.726492e-03	ci right 3.905685e-03	k: 6982	n:1830000
Cons ci ratio: 1.227659e-01	ci left: 5.226412e-04	ci right 5.915236e-04	k: 1018	n:1830000
KS ci ratio: 1.531293e-03	ci left: 7.811079e-01	ci right 7.823054e-01	k: 1430524	n:1830000
KNTC1   1830000 perm   1803 sec   (1015 perm/sec)   p_kst 7.817071e-01   p_cons 5.562842e-04   p_joint 3.815301e-03

Joint ci ratio: 4.475440e-02	ci left: 4.059234e-03	ci right 4.245593e-03	k: 7639	n:1840000
Cons ci ratio: 1.223464e-01	ci left: 5.234885e-04	ci right 5.922297e-04	k: 1025	n:1840000
KS ci ratio: 1.527139e-03	ci left: 7.811068e-01	ci right 7.823011e-01	k: 1438336	n:1840000
KNTC1   1840000 perm   1820 sec   (1011 perm/sec)   p_kst 7.817043e-01   p_cons 5.570652e-04   p_joint 4.151630e-03

Joint ci ratio: 4.465816e-02	ci left: 4.054930e-03	ci right 4.240682e-03	k: 7672	n:1850000
Cons ci ratio: 1.221680e-01	ci left: 5.222309e-04	ci right 5.906997e-04	k: 1028	n:1850000
KS ci ratio: 1.523042e-03	ci left: 7.811002e-01	ci right 7.822913e-01	k: 1446138	n:1850000
KNTC1   1850000 perm   1837 sec   (1007 perm/sec)   p_kst 7.816962e-01   p_cons 5.556757e-04   p_joint 4.147027e-03

Joint ci ratio: 4.456835e-02	ci left: 4.049610e-03	ci right 4.234735e-03	k: 7703	n:1860000
Cons ci ratio: 1.218134e-01	ci left: 5.225506e-04	ci right 5.908480e-04	k: 1034	n:1860000
KS ci ratio: 1.518968e-03	ci left: 7.810959e-01	ci right 7.822838e-01	k: 1453944	n:1860000
KNTC1   1860000 perm   1854 sec   (1003 perm/sec)   p_kst 7.816903e-01   p_cons 5.559140e-04   p_joint 4.141398e-03

Joint ci ratio: 4.461539e-02	ci left: 4.019492e-03	ci right 4.203439e-03	k: 7687	n:1870000
Cons ci ratio: 1.216373e-01	ci left: 5.213116e-04	ci right 5.893416e-04	k: 1037	n:1870000
KS ci ratio: 1.514728e-03	ci left: 7.811367e-01	ci right 7.823213e-01	k: 1461834	n:1870000
KNTC1   1870000 perm   1871 sec   (999 perm/sec)   p_kst 7.817294e-01   p_cons 5.545455e-04   p_joint 4.110695e-03

Joint ci ratio: 4.483009e-02	ci left: 3.959713e-03	ci right 4.141820e-03	k: 7614	n:1880000
Cons ci ratio: 1.211712e-01	ci left: 5.226648e-04	ci right 5.905912e-04	k: 1045	n:1880000
KS ci ratio: 1.510747e-03	ci left: 7.811264e-01	ci right 7.823079e-01	k: 1469629	n:1880000
KNTC1   1880000 perm   1889 sec   (995 perm/sec)   p_kst 7.817176e-01   p_cons 5.558511e-04   p_joint 4.050000e-03

Joint ci ratio: 4.482467e-02	ci left: 3.939808e-03	ci right 4.120976e-03	k: 7616	n:1890000
Cons ci ratio: 1.205959e-01	ci left: 5.250304e-04	ci right 5.929173e-04	k: 1055	n:1890000
KS ci ratio: 1.506738e-03	ci left: 7.811294e-01	ci right 7.823078e-01	k: 1477449	n:1890000
KNTC1   1890000 perm   1906 sec   (991 perm/sec)   p_kst 7.817190e-01   p_cons 5.582011e-04   p_joint 4.029630e-03

Joint ci ratio: 4.469864e-02	ci left: 3.941451e-03	ci right 4.122172e-03	k: 7659	n:1900000
Cons ci ratio: 1.203115e-01	ci left: 5.248194e-04	ci right 5.925075e-04	k: 1060	n:1900000
KS ci ratio: 1.502801e-03	ci left: 7.811235e-01	ci right 7.822988e-01	k: 1485252	n:1900000
KNTC1   1900000 perm   1924 sec   (987 perm/sec)   p_kst 7.817116e-01   p_cons 5.578947e-04   p_joint 4.031053e-03

Joint ci ratio: 4.381210e-02	ci left: 4.082364e-03	ci right 4.265741e-03	k: 7971	n:1910000
Cons ci ratio: 1.201983e-01	ci left: 5.230872e-04	ci right 5.904840e-04	k: 1062	n:1910000
KS ci ratio: 1.498841e-03	ci left: 7.811297e-01	ci right 7.823019e-01	k: 1493078	n:1910000
KNTC1   1910000 perm   1942 sec   (984 perm/sec)   p_kst 7.817162e-01   p_cons 5.560209e-04   p_joint 4.173298e-03

Joint ci ratio: 4.369714e-02	ci left: 4.082738e-03	ci right 4.265638e-03	k: 8013	n:1920000
Cons ci ratio: 1.197485e-01	ci left: 5.244045e-04	ci right 5.917002e-04	k: 1070	n:1920000
KS ci ratio: 1.494862e-03	ci left: 7.811473e-01	ci right 7.823164e-01	k: 1500926	n:1920000
KNTC1   1920000 perm   1959 sec   (980 perm/sec)   p_kst 7.817323e-01   p_cons 5.572917e-04   p_joint 4.173438e-03

Joint ci ratio: 4.379375e-02	ci left: 4.043646e-03	ci right 4.225205e-03	k: 7978	n:1930000
Cons ci ratio: 1.193590e-01	ci left: 5.252058e-04	ci right 5.923697e-04	k: 1077	n:1930000
KS ci ratio: 1.490911e-03	ci left: 7.811658e-01	ci right 7.823318e-01	k: 1508776	n:1930000
KNTC1   1930000 perm   1976 sec   (977 perm/sec)   p_kst 7.817492e-01   p_cons 5.580311e-04   p_joint 4.133679e-03

Joint ci ratio: 4.300052e-02	ci left: 4.173730e-03	ci right 4.357652e-03	k: 8274	n:1940000
Cons ci ratio: 1.190282e-01	ci left: 5.254992e-04	ci right 5.925012e-04	k: 1083	n:1940000
KS ci ratio: 1.487141e-03	ci left: 7.811495e-01	ci right 7.823125e-01	k: 1516559	n:1940000
KNTC1   1940000 perm   1994 sec   (973 perm/sec)   p_kst 7.817314e-01   p_cons 5.582474e-04   p_joint 4.264948e-03

Joint ci ratio: 4.301144e-02	ci left: 4.150296e-03	ci right 4.333233e-03	k: 8270	n:1950000
Cons ci ratio: 1.184287e-01	ci left: 5.282778e-04	ci right 5.952712e-04	k: 1094	n:1950000
KS ci ratio: 1.483441e-03	ci left: 7.811236e-01	ci right 7.822837e-01	k: 1524323	n:1950000
KNTC1   1950000 perm   2012 sec   (969 perm/sec)   p_kst 7.817041e-01   p_cons 5.610256e-04   p_joint 4.241026e-03

Joint ci ratio: 4.294677e-02	ci left: 4.141739e-03	ci right 4.324017e-03	k: 8295	n:1960000
Cons ci ratio: 1.182130e-01	ci left: 5.275629e-04	ci right 5.943353e-04	k: 1098	n:1960000
KS ci ratio: 1.479807e-03	ci left: 7.810893e-01	ci right 7.822466e-01	k: 1532070	n:1960000
KNTC1   1960000 perm   2029 sec   (966 perm/sec)   p_kst 7.816684e-01   p_cons 5.602041e-04   p_joint 4.232143e-03

Joint ci ratio: 4.322014e-02	ci left: 4.068488e-03	ci right 4.248710e-03	k: 8191	n:1970000
Cons ci ratio: 1.178383e-01	ci left: 5.283334e-04	ci right 5.949765e-04	k: 1105	n:1970000
KS ci ratio: 1.476072e-03	ci left: 7.810849e-01	ci right 7.822392e-01	k: 1539875	n:1970000
KNTC1   1970000 perm   2047 sec   (962 perm/sec)   p_kst 7.816624e-01   p_cons 5.609137e-04   p_joint 4.157868e-03

Joint ci ratio: 4.217607e-02	ci left: 4.252309e-03	ci right 4.436014e-03	k: 8600	n:1980000
Cons ci ratio: 1.176258e-01	ci left: 5.276257e-04	ci right 5.940512e-04	k: 1109	n:1980000
KS ci ratio: 1.472261e-03	ci left: 7.811047e-01	ci right 7.822561e-01	k: 1547728	n:1980000
KNTC1   1980000 perm   2066 sec   (959 perm/sec)   p_kst 7.816808e-01   p_cons 5.601010e-04   p_joint 4.343434e-03

Joint ci ratio: 4.208816e-02	ci left: 4.248841e-03	ci right 4.432004e-03	k: 8636	n:1990000
Cons ci ratio: 1.173618e-01	ci left: 5.274131e-04	ci right 5.936524e-04	k: 1114	n:1990000
KS ci ratio: 1.468442e-03	ci left: 7.811329e-01	ci right 7.822813e-01	k: 1555598	n:1990000
KNTC1   1990000 perm   2084 sec   (955 perm/sec)   p_kst 7.817075e-01   p_cons 5.597990e-04   p_joint 4.339698e-03

Joint ci ratio: 4.201297e-02	ci left: 4.242933e-03	ci right 4.425507e-03	k: 8667	n:2000000
Cons ci ratio: 1.172043e-01	ci left: 5.262320e-04	ci right 5.922282e-04	k: 1117	n:2000000
KS ci ratio: 1.464784e-03	ci left: 7.811303e-01	ci right 7.822758e-01	k: 1563407	n:2000000
KNTC1   2000000 perm   2101 sec   (952 perm/sec)   p_kst 7.817035e-01   p_cons 5.585000e-04   p_joint 4.333500e-03

Joint ci ratio: 4.208418e-02	ci left: 4.207546e-03	ci right 4.388911e-03	k: 8638	n:2010000
Cons ci ratio: 1.169953e-01	ci left: 5.255456e-04	ci right 5.913301e-04	k: 1121	n:2010000
KS ci ratio: 1.461054e-03	ci left: 7.811507e-01	ci right 7.822933e-01	k: 1571262	n:2010000
KNTC1   2010000 perm   2120 sec   (948 perm/sec)   p_kst 7.817224e-01   p_cons 5.577114e-04   p_joint 4.297512e-03

Joint ci ratio: 4.197984e-02	ci left: 4.207780e-03	ci right 4.388695e-03	k: 8681	n:2020000
Cons ci ratio: 1.167355e-01	ci left: 5.253468e-04	ci right 5.909503e-04	k: 1126	n:2020000
KS ci ratio: 1.457468e-03	ci left: 7.811441e-01	ci right 7.822839e-01	k: 1579063	n:2020000
KNTC1   2020000 perm   2138 sec   (945 perm/sec)   p_kst 7.817144e-01   p_cons 5.574257e-04   p_joint 4.297525e-03

Joint ci ratio: 4.187626e-02	ci left: 4.208012e-03	ci right 4.388480e-03	k: 8724	n:2030000
Cons ci ratio: 1.164774e-01	ci left: 5.251501e-04	ci right 5.905741e-04	k: 1131	n:2030000
KS ci ratio: 1.453972e-03	ci left: 7.811222e-01	ci right 7.822592e-01	k: 1586833	n:2030000
KNTC1   2030000 perm   2156 sec   (941 perm/sec)   p_kst 7.816911e-01   p_cons 5.571429e-04   p_joint 4.297537e-03

Joint ci ratio: 4.176628e-02	ci left: 4.209698e-03	ci right 4.389753e-03	k: 8770	n:2040000
Cons ci ratio: 1.163747e-01	ci left: 5.235277e-04	ci right 5.886880e-04	k: 1133	n:2040000
KS ci ratio: 1.450219e-03	ci left: 7.811673e-01	ci right 7.823015e-01	k: 1594739	n:2040000
KNTC1   2040000 perm   2174 sec   (938 perm/sec)   p_kst 7.817348e-01   p_cons 5.553922e-04   p_joint 4.299020e-03

Joint ci ratio: 4.191818e-02	ci left: 4.158751e-03	ci right 4.337288e-03	k: 8707	n:2050000
Cons ci ratio: 1.160172e-01	ci left: 5.242893e-04	ci right 5.893302e-04	k: 1140	n:2050000
KS ci ratio: 1.446581e-03	ci left: 7.811915e-01	ci right 7.823228e-01	k: 1602603	n:2050000
KNTC1   2050000 perm   2193 sec   (935 perm/sec)   p_kst 7.817576e-01   p_cons 5.560976e-04   p_joint 4.247317e-03

Joint ci ratio: 4.182466e-02	ci left: 4.157296e-03	ci right 4.335364e-03	k: 8746	n:2060000
Cons ci ratio: 1.159157e-01	ci left: 5.226869e-04	ci right 5.874684e-04	k: 1142	n:2060000
KS ci ratio: 1.443087e-03	ci left: 7.811877e-01	ci right 7.823163e-01	k: 1610410	n:2060000
KNTC1   2060000 perm   2211 sec   (932 perm/sec)   p_kst 7.817524e-01   p_cons 5.543689e-04   p_joint 4.245631e-03

Joint ci ratio: 4.173176e-02	ci left: 4.155856e-03	ci right 4.333458e-03	k: 8785	n:2070000
Cons ci ratio: 1.156630e-01	ci left: 5.225073e-04	ci right 5.871158e-04	k: 1147	n:2070000
KS ci ratio: 1.439494e-03	ci left: 7.812135e-01	ci right 7.823393e-01	k: 1618278	n:2070000
KNTC1   2070000 perm   2230 sec   (928 perm/sec)   p_kst 7.817768e-01   p_cons 5.541063e-04   p_joint 4.243961e-03

Joint ci ratio: 4.180632e-02	ci left: 4.121127e-03	ci right 4.297566e-03	k: 8754	n:2080000
Cons ci ratio: 1.154621e-01	ci left: 5.218627e-04	ci right 5.862718e-04	k: 1151	n:2080000
KS ci ratio: 1.436021e-03	ci left: 7.812169e-01	ci right 7.823400e-01	k: 1626100	n:2080000
KNTC1   2080000 perm   2249 sec   (925 perm/sec)   p_kst 7.817788e-01   p_cons 5.533654e-04   p_joint 4.208654e-03

Joint ci ratio: 4.129130e-02	ci left: 4.205108e-03	ci right 4.382872e-03	k: 8973	n:2090000
Cons ci ratio: 1.152124e-01	ci left: 5.216891e-04	ci right 5.859280e-04	k: 1156	n:2090000
KS ci ratio: 1.432674e-03	ci left: 7.811963e-01	ci right 7.823168e-01	k: 1633872	n:2090000
KNTC1   2090000 perm   2268 sec   (922 perm/sec)   p_kst 7.817569e-01   p_cons 5.531100e-04   p_joint 4.293301e-03

Joint ci ratio: 4.119502e-02	ci left: 4.204878e-03	ci right 4.382208e-03	k: 9015	n:2100000
Cons ci ratio: 1.150138e-01	ci left: 5.210548e-04	ci right 5.850975e-04	k: 1160	n:2100000
KS ci ratio: 1.429310e-03	ci left: 7.811855e-01	ci right 7.823033e-01	k: 1641664	n:2100000
KNTC1   2100000 perm   2287 sec   (918 perm/sec)   p_kst 7.817448e-01   p_cons 5.523810e-04   p_joint 4.292857e-03

Joint ci ratio: 4.107437e-02	ci left: 4.209810e-03	ci right 4.386816e-03	k: 9068	n:2110000
Cons ci ratio: 1.147669e-01	ci left: 5.208869e-04	ci right 5.847622e-04	k: 1165	n:2110000
KS ci ratio: 1.425910e-03	ci left: 7.811890e-01	ci right 7.823041e-01	k: 1649486	n:2110000
KNTC1   2110000 perm   2306 sec   (915 perm/sec)   p_kst 7.817469e-01   p_cons 5.521327e-04   p_joint 4.297630e-03

Joint ci ratio: 4.062291e-02	ci left: 4.284265e-03	ci right 4.462376e-03	k: 9270	n:2120000
Cons ci ratio: 1.146196e-01	ci left: 5.198044e-04	ci right 5.834596e-04	k: 1168	n:2120000
KS ci ratio: 1.422630e-03	ci left: 7.811693e-01	ci right 7.822818e-01	k: 1657259	n:2120000
KNTC1   2120000 perm   2325 sec   (912 perm/sec)   p_kst 7.817259e-01   p_cons 5.509434e-04   p_joint 4.372642e-03

Joint ci ratio: 4.076266e-02	ci left: 4.234873e-03	ci right 4.411550e-03	k: 9207	n:2130000
Cons ci ratio: 1.141808e-01	ci left: 5.214684e-04	ci right 5.850665e-04	k: 1177	n:2130000
KS ci ratio: 1.419381e-03	ci left: 7.811479e-01	ci right 7.822579e-01	k: 1665028	n:2130000
KNTC1   2130000 perm   2344 sec   (909 perm/sec)   p_kst 7.817033e-01   p_cons 5.525822e-04   p_joint 4.322535e-03

Joint ci ratio: 4.066340e-02	ci left: 4.235898e-03	ci right 4.412177e-03	k: 9252	n:2140000
Cons ci ratio: 1.137950e-01	ci left: 5.226634e-04	ci right 5.861774e-04	k: 1185	n:2140000
KS ci ratio: 1.416204e-03	ci left: 7.811146e-01	ci right 7.822220e-01	k: 1672771	n:2140000
KNTC1   2140000 perm   2363 sec   (905 perm/sec)   p_kst 7.816687e-01   p_cons 5.537383e-04   p_joint 4.323364e-03

Joint ci ratio: 4.056487e-02	ci left: 4.236913e-03	ci right 4.412798e-03	k: 9297	n:2150000
Cons ci ratio: 1.135082e-01	ci left: 5.229438e-04	ci right 5.863210e-04	k: 1191	n:2150000
KS ci ratio: 1.412856e-03	ci left: 7.811281e-01	ci right 7.822330e-01	k: 1680614	n:2150000
KNTC1   2150000 perm   2382 sec   (902 perm/sec)   p_kst 7.816809e-01   p_cons 5.539535e-04   p_joint 4.324186e-03

Joint ci ratio: 4.046270e-02	ci left: 4.238837e-03	ci right 4.414348e-03	k: 9344	n:2160000
Cons ci ratio: 1.132709e-01	ci left: 5.227719e-04	ci right 5.859870e-04	k: 1196	n:2160000
KS ci ratio: 1.409526e-03	ci left: 7.811429e-01	ci right 7.822452e-01	k: 1688460	n:2160000
KNTC1   2160000 perm   2401 sec   (899 perm/sec)   p_kst 7.816944e-01   p_cons 5.537037e-04   p_joint 4.325926e-03

Joint ci ratio: 4.042402e-02	ci left: 4.227514e-03	ci right 4.402385e-03	k: 9362	n:2170000
Cons ci ratio: 1.129412e-01	ci left: 5.234974e-04	ci right 5.866036e-04	k: 1203	n:2170000
KS ci ratio: 1.406307e-03	ci left: 7.811364e-01	ci right 7.822361e-01	k: 1696260	n:2170000
KNTC1   2170000 perm   2421 sec   (896 perm/sec)   p_kst 7.816866e-01   p_cons 5.543779e-04   p_joint 4.314286e-03

Joint ci ratio: 4.094595e-02	ci left: 4.100960e-03	ci right 4.272838e-03	k: 9126	n:2180000
Cons ci ratio: 1.126608e-01	ci left: 5.237707e-04	ci right 5.867427e-04	k: 1209	n:2180000
KS ci ratio: 1.403211e-03	ci left: 7.811051e-01	ci right 7.822024e-01	k: 1704006	n:2180000
KNTC1   2180000 perm   2441 sec   (893 perm/sec)   p_kst 7.816541e-01   p_cons 5.545872e-04   p_joint 4.186239e-03

Joint ci ratio: 4.083417e-02	ci left: 4.104832e-03	ci right 4.276391e-03	k: 9176	n:2190000
Cons ci ratio: 1.123363e-01	ci left: 5.244855e-04	ci right 5.873497e-04	k: 1216	n:2190000
KS ci ratio: 1.399999e-03	ci left: 7.811075e-01	ci right 7.822023e-01	k: 1711825	n:2190000
KNTC1   2190000 perm   2461 sec   (890 perm/sec)   p_kst 7.816553e-01   p_cons 5.552511e-04   p_joint 4.189954e-03

Joint ci ratio: 4.081670e-02	ci left: 4.089773e-03	ci right 4.260627e-03	k: 9184	n:2200000
Cons ci ratio: 1.121521e-01	ci left: 5.238686e-04	ci right 5.865492e-04	k: 1220	n:2200000
KS ci ratio: 1.396785e-03	ci left: 7.811158e-01	ci right 7.822080e-01	k: 1719657	n:2200000
KNTC1   2200000 perm   2481 sec   (887 perm/sec)   p_kst 7.816623e-01   p_cons 5.545455e-04   p_joint 4.174545e-03

Joint ci ratio: 4.071484e-02	ci left: 4.091869e-03	ci right 4.262375e-03	k: 9230	n:2210000
Cons ci ratio: 1.119232e-01	ci left: 5.236972e-04	ci right 5.862209e-04	k: 1225	n:2210000
KS ci ratio: 1.393541e-03	ci left: 7.811367e-01	ci right 7.822264e-01	k: 1727517	n:2210000
KNTC1   2210000 perm   2500 sec   (884 perm/sec)   p_kst 7.816819e-01   p_cons 5.542986e-04   p_joint 4.176471e-03

Joint ci ratio: 4.062912e-02	ci left: 4.090826e-03	ci right 4.260922e-03	k: 9269	n:2220000
Cons ci ratio: 1.115146e-01	ci left: 5.252790e-04	ci right 5.877475e-04	k: 1234	n:2220000
KS ci ratio: 1.390379e-03	ci left: 7.811429e-01	ci right 7.822302e-01	k: 1735345	n:2220000
KNTC1   2220000 perm   2519 sec   (881 perm/sec)   p_kst 7.816869e-01   p_cons 5.558559e-04   p_joint 4.175225e-03

Joint ci ratio: 3.974578e-02	ci left: 4.256718e-03	ci right 4.429775e-03	k: 9684	n:2230000
Cons ci ratio: 1.110657e-01	ci left: 5.272830e-04	ci right 5.897210e-04	k: 1244	n:2230000
KS ci ratio: 1.387184e-03	ci left: 7.811622e-01	ci right 7.822470e-01	k: 1743202	n:2230000
KNTC1   2230000 perm   2539 sec   (878 perm/sec)   p_kst 7.817049e-01   p_cons 5.578475e-04   p_joint 4.342601e-03

Joint ci ratio: 3.966808e-02	ci left: 4.254510e-03	ci right 4.427132e-03	k: 9722	n:2240000
Cons ci ratio: 1.108434e-01	ci left: 5.270992e-04	ci right 5.893823e-04	k: 1249	n:2240000
KS ci ratio: 1.384173e-03	ci left: 7.811415e-01	ci right 7.822239e-01	k: 1750970	n:2240000
KNTC1   2240000 perm   2558 sec   (876 perm/sec)   p_kst 7.816830e-01   p_cons 5.575893e-04   p_joint 4.340179e-03

Joint ci ratio: 3.962143e-02	ci left: 4.245722e-03	ci right 4.417780e-03	k: 9745	n:2250000
Cons ci ratio: 1.105343e-01	ci left: 5.277815e-04	ci right 5.899601e-04	k: 1256	n:2250000
KS ci ratio: 1.381074e-03	ci left: 7.811476e-01	ci right 7.822276e-01	k: 1758798	n:2250000
KNTC1   2250000 perm   2578 sec   (873 perm/sec)   p_kst 7.816880e-01   p_cons 5.582222e-04   p_joint 4.331111e-03

Joint ci ratio: 3.950798e-02	ci left: 4.251470e-03	ci right 4.423256e-03	k: 9801	n:2260000
Cons ci ratio: 1.101842e-01	ci left: 5.288884e-04	ci right 5.909871e-04	k: 1264	n:2260000
KS ci ratio: 1.377934e-03	ci left: 7.811688e-01	ci right 7.822464e-01	k: 1766660	n:2260000
KNTC1   2260000 perm   2599 sec   (869 perm/sec)   p_kst 7.817080e-01   p_cons 5.592920e-04   p_joint 4.336726e-03

Joint ci ratio: 3.941959e-02	ci left: 4.251933e-03	ci right 4.423344e-03	k: 9845	n:2270000
Cons ci ratio: 1.099238e-01	ci left: 5.291289e-04	ci right 5.910995e-04	k: 1270	n:2270000
KS ci ratio: 1.374971e-03	ci left: 7.811515e-01	ci right 7.822267e-01	k: 1774435	n:2270000
KNTC1   2270000 perm   2620 sec   (866 perm/sec)   p_kst 7.816894e-01   p_cons 5.594714e-04   p_joint 4.337004e-03

Joint ci ratio: 3.933180e-02	ci left: 4.252392e-03	ci right 4.423432e-03	k: 9889	n:2280000
Cons ci ratio: 1.097943e-01	ci left: 5.280877e-04	ci right 5.898589e-04	k: 1273	n:2280000
KS ci ratio: 1.371985e-03	ci left: 7.811443e-01	ci right 7.822172e-01	k: 1782233	n:2280000
KNTC1   2280000 perm   2641 sec   (863 perm/sec)   p_kst 7.816811e-01   p_cons 5.583333e-04   p_joint 4.337281e-03

Joint ci ratio: 3.970690e-02	ci left: 4.153831e-03	ci right 4.322536e-03	k: 9704	n:2290000
Cons ci ratio: 1.094939e-01	ci left: 5.287546e-04	ci right 5.904237e-04	k: 1280	n:2290000
KS ci ratio: 1.369140e-03	ci left: 7.811071e-01	ci right 7.821777e-01	k: 1789962	n:2290000
KNTC1   2290000 perm   2662 sec   (860 perm/sec)   p_kst 7.816428e-01   p_cons 5.589520e-04   p_joint 4.237555e-03

Joint ci ratio: 3.961922e-02	ci left: 4.154281e-03	ci right 4.322623e-03	k: 9747	n:2300000
Cons ci ratio: 1.092384e-01	ci left: 5.289930e-04	ci right 5.905366e-04	k: 1286	n:2300000
KS ci ratio: 1.366203e-03	ci left: 7.810977e-01	ci right 7.821660e-01	k: 1797754	n:2300000
KNTC1   2300000 perm   2683 sec   (857 perm/sec)   p_kst 7.816322e-01   p_cons 5.591304e-04   p_joint 4.237826e-03

Joint ci ratio: 3.963592e-02	ci left: 4.132867e-03	ci right 4.300414e-03	k: 9739	n:2310000
Cons ci ratio: 1.091113e-01	ci left: 5.279663e-04	ci right 5.893144e-04	k: 1289	n:2310000
KS ci ratio: 1.363316e-03	ci left: 7.810805e-01	ci right 7.821465e-01	k: 1805528	n:2310000
KNTC1   2310000 perm   2703 sec   (855 perm/sec)   p_kst 7.816139e-01   p_cons 5.580087e-04   p_joint 4.216017e-03

Joint ci ratio: 3.956496e-02	ci left: 4.129990e-03	ci right 4.297114e-03	k: 9774	n:2320000
Cons ci ratio: 1.089847e-01	ci left: 5.269484e-04	ci right 5.881026e-04	k: 1292	n:2320000
KS ci ratio: 1.360328e-03	ci left: 7.810932e-01	ci right 7.821569e-01	k: 1813371	n:2320000
KNTC1   2320000 perm   2724 sec   (852 perm/sec)   p_kst 7.816254e-01   p_cons 5.568966e-04   p_joint 4.212931e-03

Joint ci ratio: 3.946409e-02	ci left: 4.133512e-03	ci right 4.300342e-03	k: 9824	n:2330000
Cons ci ratio: 1.088166e-01	ci left: 5.263568e-04	ci right 5.873420e-04	k: 1296	n:2330000
KS ci ratio: 1.357453e-03	ci left: 7.810827e-01	ci right 7.821441e-01	k: 1821160	n:2330000
KNTC1   2330000 perm   2744 sec   (849 perm/sec)   p_kst 7.816137e-01   p_cons 5.562232e-04   p_joint 4.216309e-03

Joint ci ratio: 3.947857e-02	ci left: 4.112885e-03	ci right 4.278944e-03	k: 9817	n:2340000
Cons ci ratio: 1.085241e-01	ci left: 5.270175e-04	ci right 5.879047e-04	k: 1303	n:2340000
KS ci ratio: 1.354671e-03	ci left: 7.810530e-01	ci right 7.821122e-01	k: 1828904	n:2340000
KNTC1   2340000 perm   2765 sec   (846 perm/sec)   p_kst 7.815829e-01   p_cons 5.568376e-04   p_joint 4.195299e-03

Joint ci ratio: 3.950520e-02	ci left: 4.089905e-03	ci right 4.255151e-03	k: 9804	n:2350000
Cons ci ratio: 1.083166e-01	ci left: 5.268449e-04	ci right 5.875884e-04	k: 1308	n:2350000
KS ci ratio: 1.351814e-03	ci left: 7.810469e-01	ci right 7.821039e-01	k: 1836703	n:2350000
KNTC1   2350000 perm   2785 sec   (844 perm/sec)   p_kst 7.815757e-01   p_cons 5.565957e-04   p_joint 4.171915e-03

Joint ci ratio: 3.941684e-02	ci left: 4.091035e-03	ci right 4.255948e-03	k: 9848	n:2360000
Cons ci ratio: 1.080281e-01	ci left: 5.274983e-04	ci right 5.881449e-04	k: 1315	n:2360000
KS ci ratio: 1.348912e-03	ci left: 7.810571e-01	ci right 7.821117e-01	k: 1844540	n:2360000
KNTC1   2360000 perm   2806 sec   (841 perm/sec)   p_kst 7.815847e-01   p_cons 5.572034e-04   p_joint 4.172881e-03

Joint ci ratio: 3.932907e-02	ci left: 4.092156e-03	ci right 4.256739e-03	k: 9892	n:2370000
Cons ci ratio: 1.077827e-01	ci left: 5.277359e-04	ci right 5.882632e-04	k: 1321	n:2370000
KS ci ratio: 1.346111e-03	ci left: 7.810460e-01	ci right 7.820985e-01	k: 1852327	n:2370000
KNTC1   2370000 perm   2827 sec   (838 perm/sec)   p_kst 7.815726e-01   p_cons 5.573840e-04   p_joint 4.173840e-03

Joint ci ratio: 3.934739e-02	ci left: 4.071217e-03	ci right 4.235036e-03	k: 9883	n:2380000
Cons ci ratio: 1.074580e-01	ci left: 5.287894e-04	ci right 5.892433e-04	k: 1329	n:2380000
KS ci ratio: 1.343291e-03	ci left: 7.810443e-01	ci right 7.820945e-01	k: 1860136	n:2380000
KNTC1   2380000 perm   2847 sec   (836 perm/sec)   p_kst 7.815697e-01   p_cons 5.584034e-04   p_joint 4.152521e-03

Joint ci ratio: 3.932577e-02	ci left: 4.058739e-03	ci right 4.221964e-03	k: 9894	n:2390000
Cons ci ratio: 1.072566e-01	ci left: 5.286128e-04	ci right 5.889260e-04	k: 1334	n:2390000
KS ci ratio: 1.340596e-03	ci left: 7.810153e-01	ci right 7.820635e-01	k: 1867880	n:2390000
KNTC1   2390000 perm   2868 sec   (833 perm/sec)   p_kst 7.815397e-01   p_cons 5.581590e-04   p_joint 4.139749e-03

Joint ci ratio: 3.851377e-02	ci left: 4.215131e-03	ci right 4.381068e-03	k: 10314	n:2400000
Cons ci ratio: 1.071764e-01	ci left: 5.272212e-04	ci right 5.873279e-04	k: 1336	n:2400000
KS ci ratio: 1.337912e-03	ci left: 7.809879e-01	ci right 7.820339e-01	k: 1875627	n:2400000
KNTC1   2400000 perm   2890 sec   (830 perm/sec)   p_kst 7.815112e-01   p_cons 5.566667e-04   p_joint 4.297500e-03

Joint ci ratio: 3.848790e-02	ci left: 4.203394e-03	ci right 4.368755e-03	k: 10328	n:2410000
Cons ci ratio: 1.068969e-01	ci left: 5.278604e-04	ci right 5.878731e-04	k: 1343	n:2410000
KS ci ratio: 1.335075e-03	ci left: 7.810039e-01	ci right 7.820477e-01	k: 1883478	n:2410000
KNTC1   2410000 perm   2911 sec   (828 perm/sec)   p_kst 7.815261e-01   p_cons 5.572614e-04   p_joint 4.285477e-03

Joint ci ratio: 3.842105e-02	ci left: 4.200757e-03	ci right 4.365722e-03	k: 10364	n:2420000
Cons ci ratio: 1.066986e-01	ci left: 5.276901e-04	ci right 5.875652e-04	k: 1348	n:2420000
KS ci ratio: 1.332320e-03	ci left: 7.810032e-01	ci right 7.820449e-01	k: 1891289	n:2420000
KNTC1   2420000 perm   2934 sec   (825 perm/sec)   p_kst 7.815244e-01   p_cons 5.570248e-04   p_joint 4.282645e-03

Joint ci ratio: 3.840094e-02	ci left: 4.187953e-03	ci right 4.352327e-03	k: 10375	n:2430000
Cons ci ratio: 1.064229e-01	ci left: 5.283224e-04	ci right 5.881046e-04	k: 1355	n:2430000
KS ci ratio: 1.329520e-03	ci left: 7.810186e-01	ci right 7.820581e-01	k: 1899139	n:2430000
KNTC1   2430000 perm   2955 sec   (822 perm/sec)   p_kst 7.815387e-01   p_cons 5.576132e-04   p_joint 4.269547e-03

Joint ci ratio: 3.832715e-02	ci left: 4.187025e-03	ci right 4.351040e-03	k: 10415	n:2440000
Cons ci ratio: 1.061882e-01	ci left: 5.285508e-04	ci right 5.882187e-04	k: 1361	n:2440000
KS ci ratio: 1.326835e-03	ci left: 7.810089e-01	ci right 7.820462e-01	k: 1906928	n:2440000
KNTC1   2440000 perm   2977 sec   (820 perm/sec)   p_kst 7.815279e-01   p_cons 5.577869e-04   p_joint 4.268443e-03

Joint ci ratio: 3.823727e-02	ci left: 4.189744e-03	ci right 4.353472e-03	k: 10464	n:2450000
Cons ci ratio: 1.059938e-01	ci left: 5.283801e-04	ci right 5.879128e-04	k: 1366	n:2450000
KS ci ratio: 1.324092e-03	ci left: 7.810184e-01	ci right 7.820536e-01	k: 1914764	n:2450000
KNTC1   2450000 perm   2998 sec   (817 perm/sec)   p_kst 7.815363e-01   p_cons 5.575510e-04   p_joint 4.271020e-03

Joint ci ratio: 3.794557e-02	ci left: 4.237539e-03	ci right 4.401843e-03	k: 10625	n:2460000
Cons ci ratio: 1.058391e-01	ci left: 5.278151e-04	ci right 5.871920e-04	k: 1370	n:2460000
KS ci ratio: 1.321370e-03	ci left: 7.810266e-01	ci right 7.820597e-01	k: 1922597	n:2460000
KNTC1   2460000 perm   3020 sec   (815 perm/sec)   p_kst 7.815435e-01   p_cons 5.569106e-04   p_joint 4.319106e-03

Joint ci ratio: 3.788329e-02	ci left: 4.234418e-03	ci right 4.398326e-03	k: 10660	n:2470000
Cons ci ratio: 1.056083e-01	ci left: 5.280432e-04	ci right 5.873080e-04	k: 1376	n:2470000
KS ci ratio: 1.318726e-03	ci left: 7.810190e-01	ci right 7.820500e-01	k: 1930391	n:2470000
KNTC1   2470000 perm   3042 sec   (812 perm/sec)   p_kst 7.815348e-01   p_cons 5.570850e-04   p_joint 4.315789e-03

Joint ci ratio: 3.786936e-02	ci left: 4.220539e-03	ci right 4.383848e-03	k: 10668	n:2480000
Cons ci ratio: 1.050753e-01	ci left: 5.314104e-04	ci right 5.907336e-04	k: 1390	n:2480000
KS ci ratio: 1.316141e-03	ci left: 7.810001e-01	ci right 7.820291e-01	k: 1938157	n:2480000
KNTC1   2480000 perm   3064 sec   (809 perm/sec)   p_kst 7.815149e-01   p_cons 5.604839e-04   p_joint 4.301613e-03

Joint ci ratio: 3.779327e-02	ci left: 4.220694e-03	ci right 4.383675e-03	k: 10711	n:2490000
Cons ci ratio: 1.050376e-01	ci left: 5.296673e-04	ci right 5.887734e-04	k: 1391	n:2490000
KS ci ratio: 1.313539e-03	ci left: 7.809898e-01	ci right 7.820167e-01	k: 1945944	n:2490000
KNTC1   2490000 perm   3086 sec   (807 perm/sec)   p_kst 7.815036e-01   p_cons 5.586345e-04   p_joint 4.301606e-03

Joint ci ratio: 3.772293e-02	ci left: 4.219660e-03	ci right 4.382291e-03	k: 10751	n:2500000
Cons ci ratio: 1.046996e-01	ci left: 5.310542e-04	ci right 5.901126e-04	k: 1400	n:2500000
KS ci ratio: 1.310771e-03	ci left: 7.810269e-01	ci right 7.820517e-01	k: 1953849	n:2500000
KNTC1   2500000 perm   3108 sec   (805 perm/sec)   p_kst 7.815396e-01   p_cons 5.600000e-04   p_joint 4.300400e-03

Joint ci ratio: 3.770213e-02	ci left: 4.207584e-03	ci right 4.369658e-03	k: 10763	n:2510000
Cons ci ratio: 1.043649e-01	ci left: 5.324304e-04	ci right 5.914409e-04	k: 1409	n:2510000
KS ci ratio: 1.308134e-03	ci left: 7.810341e-01	ci right 7.820569e-01	k: 1961680	n:2510000
KNTC1   2510000 perm   3129 sec   (802 perm/sec)   p_kst 7.815458e-01   p_cons 5.613546e-04   p_joint 4.288048e-03

Joint ci ratio: 3.806281e-02	ci left: 4.111484e-03	ci right 4.271404e-03	k: 10561	n:2520000
Cons ci ratio: 1.041435e-01	ci left: 5.326364e-04	ci right 5.915370e-04	k: 1415	n:2520000
KS ci ratio: 1.305533e-03	ci left: 7.810357e-01	ci right 7.820565e-01	k: 1969497	n:2520000
KNTC1   2520000 perm   3151 sec   (800 perm/sec)   p_kst 7.815464e-01   p_cons 5.615079e-04   p_joint 4.190873e-03

Joint ci ratio: 3.797837e-02	ci left: 4.113634e-03	ci right 4.273275e-03	k: 10608	n:2530000
Cons ci ratio: 1.039602e-01	ci left: 5.324560e-04	ci right 5.912266e-04	k: 1420	n:2530000
KS ci ratio: 1.302866e-03	ci left: 7.810591e-01	ci right 7.820778e-01	k: 1977369	n:2530000
KNTC1   2530000 perm   3173 sec   (797 perm/sec)   p_kst 7.815688e-01   p_cons 5.612648e-04   p_joint 4.192885e-03

Joint ci ratio: 3.784103e-02	ci left: 4.127467e-03	ci right 4.287053e-03	k: 10685	n:2540000
Cons ci ratio: 1.036687e-01	ci left: 5.334276e-04	ci right 5.921302e-04	k: 1428	n:2540000
KS ci ratio: 1.300347e-03	ci left: 7.810473e-01	ci right 7.820639e-01	k: 1985152	n:2540000
KNTC1   2540000 perm   3195 sec   (795 perm/sec)   p_kst 7.815559e-01   p_cons 5.622047e-04   p_joint 4.206693e-03

Joint ci ratio: 3.777749e-02	ci left: 4.125265e-03	ci right 4.284492e-03	k: 10721	n:2550000
Cons ci ratio: 1.035239e-01	ci left: 5.328637e-04	ci right 5.914174e-04	k: 1432	n:2550000
KS ci ratio: 1.297791e-03	ci left: 7.810492e-01	ci right 7.820639e-01	k: 1992970	n:2550000
KNTC1   2550000 perm   3217 sec   (793 perm/sec)   p_kst 7.815569e-01   p_cons 5.615686e-04   p_joint 4.204314e-03

Joint ci ratio: 3.772484e-02	ci left: 4.120758e-03	ci right 4.279585e-03	k: 10751	n:2560000
Cons ci ratio: 1.033079e-01	ci left: 5.330653e-04	ci right 5.915116e-04	k: 1438	n:2560000
KS ci ratio: 1.295188e-03	ci left: 7.810676e-01	ci right 7.820802e-01	k: 2000830	n:2560000
KNTC1   2560000 perm   3240 sec   (790 perm/sec)   p_kst 7.815742e-01   p_cons 5.617188e-04   p_joint 4.199609e-03

Joint ci ratio: 3.765663e-02	ci left: 4.119756e-03	ci right 4.278251e-03	k: 10790	n:2570000
Cons ci ratio: 1.032004e-01	ci left: 5.321283e-04	ci right 5.904074e-04	k: 1441	n:2570000
KS ci ratio: 1.292591e-03	ci left: 7.810885e-01	ci right 7.820992e-01	k: 2008697	n:2570000
KNTC1   2570000 perm   3262 sec   (788 perm/sec)   p_kst 7.815942e-01   p_cons 5.607004e-04   p_joint 4.198444e-03

Joint ci ratio: 3.778727e-02	ci left: 4.075375e-03	ci right 4.232718e-03	k: 10716	n:2580000
Cons ci ratio: 1.029864e-01	ci left: 5.323314e-04	ci right 5.905045e-04	k: 1447	n:2580000
KS ci ratio: 1.290134e-03	ci left: 7.810759e-01	ci right 7.820847e-01	k: 2016478	n:2580000
KNTC1   2580000 perm   3284 sec   (786 perm/sec)   p_kst 7.815806e-01   p_cons 5.608527e-04   p_joint 4.153488e-03

Joint ci ratio: 3.769936e-02	ci left: 4.078763e-03	ci right 4.235863e-03	k: 10766	n:2590000
Cons ci ratio: 1.027383e-01	ci left: 5.329092e-04	ci right 5.909968e-04	k: 1454	n:2590000
KS ci ratio: 1.287644e-03	ci left: 7.810762e-01	ci right 7.820830e-01	k: 2024292	n:2590000
KNTC1   2590000 perm   3307 sec   (783 perm/sec)   p_kst 7.815799e-01   p_cons 5.613900e-04   p_joint 4.156757e-03

Joint ci ratio: 3.769088e-02	ci left: 4.064980e-03	ci right 4.221513e-03	k: 10771	n:2600000
Cons ci ratio: 1.026679e-01	ci left: 5.316090e-04	ci right 5.895127e-04	k: 1456	n:2600000
KS ci ratio: 1.285194e-03	ci left: 7.810696e-01	ci right 7.820744e-01	k: 2032088	n:2600000
KNTC1   2600000 perm   3329 sec   (781 perm/sec)   p_kst 7.815723e-01   p_cons 5.600000e-04   p_joint 4.142692e-03

Joint ci ratio: 3.763509e-02	ci left: 4.061550e-03	ci right 4.217714e-03	k: 10803	n:2610000
Cons ci ratio: 1.024922e-01	ci left: 5.314388e-04	ci right 5.892189e-04	k: 1461	n:2610000
KS ci ratio: 1.282732e-03	ci left: 7.810699e-01	ci right 7.820728e-01	k: 2039902	n:2610000
KNTC1   2610000 perm   3352 sec   (779 perm/sec)   p_kst 7.815716e-01   p_cons 5.597701e-04   p_joint 4.139080e-03

Joint ci ratio: 3.756736e-02	ci left: 4.060793e-03	ci right 4.216642e-03	k: 10842	n:2620000
Cons ci ratio: 1.023174e-01	ci left: 5.312699e-04	ci right 5.889272e-04	k: 1466	n:2620000
KS ci ratio: 1.280303e-03	ci left: 7.810652e-01	ci right 7.820662e-01	k: 2047703	n:2620000
KNTC1   2620000 perm   3375 sec   (776 perm/sec)   p_kst 7.815660e-01   p_cons 5.595420e-04   p_joint 4.138168e-03

Joint ci ratio: 3.749308e-02	ci left: 4.061549e-03	ci right 4.217112e-03	k: 10885	n:2630000
Cons ci ratio: 1.020741e-01	ci left: 5.318435e-04	ci right 5.894176e-04	k: 1473	n:2630000
KS ci ratio: 1.277809e-03	ci left: 7.810815e-01	ci right 7.820806e-01	k: 2055559	n:2630000
KNTC1   2630000 perm   3398 sec   (774 perm/sec)   p_kst 7.815814e-01   p_cons 5.600760e-04   p_joint 4.138783e-03

Joint ci ratio: 3.634141e-02	ci left: 4.308129e-03	ci right 4.467962e-03	k: 11583	n:2640000
Cons ci ratio: 9.763503e-02	ci left: 5.804282e-04	ci right 6.403730e-04	k: 1610	n:2640000
KS ci ratio: 1.275456e-03	ci left: 7.810640e-01	ci right 7.820612e-01	k: 2063326	n:2640000
KNTC1   2640000 perm   3422 sec   (772 perm/sec)   p_kst 7.815629e-01   p_cons 6.098485e-04   p_joint 4.387500e-03

Outputting figure to mutsig2_images.part000000000093/KNTC1.9_6882_2640000_0.78156_0.00060985_0.0043875.png
                gene_name: KNTC1
               theta_stop: 0.098 
                    nperm: 2640000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.00061 
      ci_cons_bounds_left: 0.00058 
     ci_cons_bounds_right: 0.00064 
                  p_joint: 0.0044 
     ci_joint_bounds_left: 0.0043 
    ci_joint_bounds_right: 0.0045 

Current progress: 3 percent done.
KRT84
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.078422e-01	ci left: 1.103719e-01	ci right 1.230523e-01	k: 1166	n:10000
Cons ci ratio: 1.111580e-01	ci left: 1.044194e-01	ci right 1.168085e-01	k: 1105	n:10000
KS ci ratio: 9.320203e-02	ci left: 1.432503e-01	ci right 1.573541e-01	k: 1502	n:10000
KRT84   10000 perm   2 sec   (4360 perm/sec)   p_kst 1.502000e-01   p_cons 1.105000e-01   p_joint 1.166000e-01

Joint ci ratio: 7.943217e-02	ci left: 1.042218e-01	ci right 1.128924e-01	k: 2170	n:20000
Cons ci ratio: 7.723471e-02	ci left: 1.096759e-01	ci right 1.185366e-01	k: 2281	n:20000
KS ci ratio: 6.572483e-02	ci left: 1.460145e-01	ci right 1.559872e-01	k: 3019	n:20000
KRT84   20000 perm   5 sec   (4187 perm/sec)   p_kst 1.509500e-01   p_cons 1.140500e-01   p_joint 1.085000e-01

Outputting figure to mutsig2_images.part000000000093/KRT84.9_1839_20000_0.15095_0.11405_0.1085.png
                gene_name: KRT84
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 5 percent done.
KLKB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.992190e-02	ci left: 4.809557e-01	ci right 5.006496e-01	k: 4908	n:10000
Cons ci ratio: 6.890587e-02	ci left: 2.360028e-01	ci right 2.529463e-01	k: 2444	n:10000
KS ci ratio: 2.941013e-02	ci left: 6.303014e-01	ci right 6.492171e-01	k: 6398	n:10000
KLKB1   10000 perm   2 sec   (5040 perm/sec)   p_kst 6.398000e-01   p_cons 2.444000e-01   p_joint 4.908000e-01

Outputting figure to mutsig2_images.part000000000093/KLKB1.6_1973_10000_0.6398_0.2444_0.4908.png
                gene_name: KLKB1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 6 percent done.
KNDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.172700e-01	ci left: 9.457666e-02	ci right 1.064572e-01	k: 1004	n:10000
Cons ci ratio: 9.397593e-02	ci left: 1.411914e-01	ci right 1.552142e-01	k: 1481	n:10000
KS ci ratio: 2.008231e-01	ci left: 3.300513e-02	ci right 4.046787e-02	k: 366	n:10000
KNDC1   10000 perm   2 sec   (4406 perm/sec)   p_kst 3.660000e-02   p_cons 1.481000e-01   p_joint 1.004000e-01

Joint ci ratio: 1.322148e-01	ci left: 3.931020e-02	ci right 4.492391e-02	k: 841	n:20000
Cons ci ratio: 6.521690e-02	ci left: 1.479873e-01	ci right 1.580138e-01	k: 3059	n:20000
KS ci ratio: 1.419064e-01	ci left: 3.413670e-02	ci right 3.939908e-02	k: 734	n:20000
KNDC1   20000 perm   5 sec   (4017 perm/sec)   p_kst 3.670000e-02   p_cons 1.529500e-01   p_joint 4.205000e-02

Joint ci ratio: 1.433074e-01	ci left: 2.258711e-02	ci right 2.610583e-02	k: 729	n:30000
Cons ci ratio: 5.372027e-02	ci left: 1.466690e-01	ci right 1.547988e-01	k: 4521	n:30000
KS ci ratio: 1.140274e-01	ci left: 3.573495e-02	ci right 4.008846e-02	k: 1136	n:30000
KNDC1   30000 perm   8 sec   (3865 perm/sec)   p_kst 3.786667e-02   p_cons 1.507000e-01   p_joint 2.430000e-02

Joint ci ratio: 1.229692e-01	ci left: 2.324955e-02	ci right 2.631997e-02	k: 990	n:40000
Cons ci ratio: 4.686851e-02	ci left: 1.453502e-01	ci right 1.523509e-01	k: 5953	n:40000
KS ci ratio: 1.037633e-01	ci left: 3.265968e-02	ci right 3.625832e-02	k: 1377	n:40000
KNDC1   40000 perm   11 sec   (3735 perm/sec)   p_kst 3.442500e-02   p_cons 1.488250e-01   p_joint 2.475000e-02

Joint ci ratio: 1.022412e-01	ci left: 2.709793e-02	ci right 3.003715e-02	k: 1427	n:50000
Cons ci ratio: 4.194537e-02	ci left: 1.455720e-01	ci right 1.518288e-01	k: 7434	n:50000
KS ci ratio: 9.129643e-02	ci left: 3.393422e-02	ci right 3.719999e-02	k: 1777	n:50000
KNDC1   50000 perm   14 sec   (3678 perm/sec)   p_kst 3.554000e-02   p_cons 1.486800e-01   p_joint 2.854000e-02

Joint ci ratio: 8.162399e-02	ci left: 3.550372e-02	ci right 3.854128e-02	k: 2220	n:60000
Cons ci ratio: 3.815772e-02	ci left: 1.467216e-01	ci right 1.524457e-01	k: 8974	n:60000
KS ci ratio: 8.349630e-02	ci left: 3.395191e-02	ci right 3.692657e-02	k: 2125	n:60000
KNDC1   60000 perm   17 sec   (3625 perm/sec)   p_kst 3.541667e-02   p_cons 1.495667e-01   p_joint 3.700000e-02

Outputting figure to mutsig2_images.part000000000093/KNDC1.6_5370_60000_0.035417_0.14957_0.037.png
                gene_name: KNDC1
               theta_stop: 0.083 
                    nperm: 60000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 8 percent done.
KPNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.714328e-02	ci left: 2.455898e-01	ci right 2.627536e-01	k: 2541	n:10000
Cons ci ratio: 1.245670e-01	ci left: 8.446093e-02	ci right 9.577916e-02	k: 900	n:10000
KS ci ratio: 5.198465e-02	ci left: 3.529698e-01	ci right 3.719104e-01	k: 3624	n:10000
KPNA1   10000 perm   2 sec   (6006 perm/sec)   p_kst 3.624000e-01   p_cons 9.000000e-02   p_joint 2.541000e-01

Joint ci ratio: 5.535001e-02	ci left: 1.949206e-01	ci right 2.060667e-01	k: 4009	n:20000
Cons ci ratio: 8.734023e-02	ci left: 8.748975e-02	ci right 9.552946e-02	k: 1829	n:20000
KS ci ratio: 3.637597e-02	ci left: 3.606137e-01	ci right 3.740249e-01	k: 7346	n:20000
KPNA1   20000 perm   4 sec   (5428 perm/sec)   p_kst 3.673000e-01   p_cons 9.145000e-02   p_joint 2.004500e-01

Outputting figure to mutsig2_images.part000000000093/KPNA1.6_1669_20000_0.3673_0.09145_0.20045.png
                gene_name: KPNA1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 9 percent done.
KRT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.415012e-02	ci left: 1.707441e-01	ci right 1.858438e-01	k: 1782	n:10000
Cons ci ratio: 2.108706e-01	ci left: 2.986994e-02	ci right 3.700523e-02	k: 333	n:10000
KS ci ratio: 1.212039e-02	ci left: 9.070994e-01	ci right 9.182588e-01	k: 9128	n:10000
KRT3   10000 perm   2 sec   (5617 perm/sec)   p_kst 9.128000e-01   p_cons 3.330000e-02   p_joint 1.782000e-01

Joint ci ratio: 6.179443e-02	ci left: 1.622990e-01	ci right 1.726979e-01	k: 3349	n:20000
Cons ci ratio: 1.505158e-01	ci left: 3.032647e-02	ci right 3.531057e-02	k: 655	n:20000
KS ci ratio: 8.463499e-03	ci left: 9.107942e-01	ci right 9.185847e-01	k: 18295	n:20000
KRT3   20000 perm   4 sec   (5067 perm/sec)   p_kst 9.147500e-01   p_cons 3.275000e-02   p_joint 1.674500e-01

Joint ci ratio: 5.234384e-02	ci left: 1.533616e-01	ci right 1.616382e-01	k: 4724	n:30000
Cons ci ratio: 1.193079e-01	ci left: 3.265748e-02	ci right 3.683325e-02	k: 1041	n:30000
KS ci ratio: 7.153007e-03	ci left: 9.058923e-01	ci right 9.124283e-01	k: 27276	n:30000
KRT3   30000 perm   6 sec   (4850 perm/sec)   p_kst 9.092000e-01   p_cons 3.470000e-02   p_joint 1.574667e-01

Joint ci ratio: 4.498422e-02	ci left: 1.559490e-01	ci right 1.631505e-01	k: 6381	n:40000
Cons ci ratio: 1.094891e-01	ci left: 2.934747e-02	ci right 3.277106e-02	k: 1241	n:40000
KS ci ratio: 6.173857e-03	ci left: 9.068996e-01	ci right 9.125407e-01	k: 36390	n:40000
KRT3   40000 perm   8 sec   (4708 perm/sec)   p_kst 9.097500e-01   p_cons 3.102500e-02   p_joint 1.595250e-01

Joint ci ratio: 4.269342e-02	ci left: 1.411910e-01	ci right 1.473703e-01	k: 7213	n:50000
Cons ci ratio: 9.788146e-02	ci left: 2.955668e-02	ci right 3.261808e-02	k: 1553	n:50000
KS ci ratio: 5.547818e-03	ci left: 9.064250e-01	ci right 9.114874e-01	k: 45449	n:50000
KRT3   50000 perm   11 sec   (4599 perm/sec)   p_kst 9.089800e-01   p_cons 3.106000e-02   p_joint 1.442600e-01

Outputting figure to mutsig2_images.part000000000093/KRT3.6_1923_50000_0.90898_0.03106_0.14426.png
                gene_name: KRT3
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 11 percent done.
KRT37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.962467e-03	ci left: 9.345442e-01	ci right 9.439979e-01	k: 9394	n:10000
Cons ci ratio: 1.464933e-02	ci left: 8.709139e-01	ci right 8.838654e-01	k: 8775	n:10000
KS ci ratio: 2.010159e-02	ci left: 7.837077e-01	ci right 7.997220e-01	k: 7918	n:10000
KRT37   10000 perm   2 sec   (6027 perm/sec)   p_kst 7.918000e-01   p_cons 8.775000e-01   p_joint 9.394000e-01

Outputting figure to mutsig2_images.part000000000093/KRT37.6_1378_10000_0.7918_0.8775_0.9394.png
                gene_name: KRT37
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 12 percent done.
KRT75
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.969253e-02	ci left: 7.905018e-01	ci right 8.063240e-01	k: 7985	n:10000
KS ci ratio: 2.958900e-02	ci left: 6.274864e-01	ci right 6.464337e-01	k: 6370	n:10000
KRT75   10000 perm   2 sec   (5728 perm/sec)   p_kst 6.370000e-01   p_cons 7.985000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT75.6_1692_10000_0.637_0.7985_1.png
                gene_name: KRT75
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
KRT82
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.463247e-02	ci left: 7.079580e-01	ci right 7.257155e-01	k: 7169	n:10000
Cons ci ratio: 5.174931e-02	ci left: 3.550575e-01	ci right 3.740215e-01	k: 3645	n:10000
KS ci ratio: 3.393222e-02	ci left: 5.618315e-01	ci right 5.813268e-01	k: 5716	n:10000
KRT82   10000 perm   2 sec   (5517 perm/sec)   p_kst 5.716000e-01   p_cons 3.645000e-01   p_joint 7.169000e-01

Outputting figure to mutsig2_images.part000000000093/KRT82.6_1578_10000_0.5716_0.3645_0.7169.png
                gene_name: KRT82
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 15 percent done.
KRT85
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.502554e-02	ci left: 5.461967e-01	ci right 5.657707e-01	k: 5560	n:10000
Cons ci ratio: 1.349449e-02	ci left: 8.879038e-01	ci right 9.000656e-01	k: 8941	n:10000
KS ci ratio: 4.218414e-02	ci left: 4.534885e-01	ci right 4.731329e-01	k: 4633	n:10000
KRT85   10000 perm   2 sec   (5461 perm/sec)   p_kst 4.633000e-01   p_cons 8.941000e-01   p_joint 5.560000e-01

Outputting figure to mutsig2_images.part000000000093/KRT85.6_1560_10000_0.4633_0.8941_0.556.png
                gene_name: KRT85
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 17 percent done.
KLRAQ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.229981e-01	ci left: 8.650182e-02	ci right 9.793702e-02	k: 921	n:10000
Cons ci ratio: 8.067374e-02	ci left: 1.832380e-01	ci right 1.987424e-01	k: 1909	n:10000
KS ci ratio: 9.549380e-02	ci left: 1.372712e-01	ci right 1.511368e-01	k: 1441	n:10000
KLRAQ1   10000 perm   2 sec   (5031 perm/sec)   p_kst 1.441000e-01   p_cons 1.909000e-01   p_joint 9.210000e-02

Joint ci ratio: 6.002700e-02	ci left: 1.704482e-01	ci right 1.810463e-01	k: 3514	n:20000
Cons ci ratio: 5.583810e-02	ci left: 1.921502e-01	ci right 2.032378e-01	k: 3953	n:20000
KS ci ratio: 6.738898e-02	ci left: 1.398020e-01	ci right 1.496015e-01	k: 2893	n:20000
KLRAQ1   20000 perm   4 sec   (4515 perm/sec)   p_kst 1.446500e-01   p_cons 1.976500e-01   p_joint 1.757000e-01

Outputting figure to mutsig2_images.part000000000093/KLRAQ1.5_2431_20000_0.14465_0.19765_0.1757.png
                gene_name: KLRAQ1
               theta_stop: 0.067 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 18 percent done.
KMO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.249928e-02	ci left: 4.497952e-01	ci right 4.694284e-01	k: 4596	n:10000
Cons ci ratio: 4.050932e-02	ci left: 4.736615e-01	ci right 4.933481e-01	k: 4835	n:10000
KS ci ratio: 4.521658e-02	ci left: 4.192713e-01	ci right 4.387700e-01	k: 4290	n:10000
KMO   10000 perm   2 sec   (6136 perm/sec)   p_kst 4.290000e-01   p_cons 4.835000e-01   p_joint 4.596000e-01

Outputting figure to mutsig2_images.part000000000093/KMO.5_1521_10000_0.429_0.4835_0.4596.png
                gene_name: KMO
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 20 percent done.
KRBA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.386189e-02	ci left: 8.825771e-01	ci right 8.949954e-01	k: 8889	n:10000
Cons ci ratio: 2.790793e-02	ci left: 6.542430e-01	ci right 6.728616e-01	k: 6636	n:10000
KS ci ratio: 2.229991e-02	ci left: 7.469526e-01	ci right 7.638984e-01	k: 7555	n:10000
KRBA2   10000 perm   2 sec   (5134 perm/sec)   p_kst 7.555000e-01   p_cons 6.636000e-01   p_joint 8.889000e-01

Outputting figure to mutsig2_images.part000000000093/KRBA2.5_1487_10000_0.7555_0.6636_0.8889.png
                gene_name: KRBA2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 22 percent done.
KRIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.726672e-02	ci left: 6.646124e-01	ci right 6.830863e-01	k: 6739	n:10000
Cons ci ratio: 3.235768e-02	ci left: 5.850011e-01	ci right 6.043437e-01	k: 5947	n:10000
KS ci ratio: 4.005790e-02	ci left: 4.792569e-01	ci right 4.989495e-01	k: 4891	n:10000
KRIT1   10000 perm   2 sec   (5249 perm/sec)   p_kst 4.891000e-01   p_cons 5.947000e-01   p_joint 6.739000e-01

Outputting figure to mutsig2_images.part000000000093/KRIT1.5_2275_10000_0.4891_0.5947_0.6739.png
                gene_name: KRIT1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 23 percent done.
KRT33B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.073150e-02	ci left: 6.096996e-01	ci right 6.288309e-01	k: 6193	n:10000
Cons ci ratio: 1.606061e-02	ci left: 8.492710e-01	ci right 8.631208e-01	k: 8563	n:10000
KS ci ratio: 4.309433e-02	ci left: 4.429091e-01	ci right 4.625185e-01	k: 4527	n:10000
KRT33B   10000 perm   2 sec   (5028 perm/sec)   p_kst 4.527000e-01   p_cons 8.563000e-01   p_joint 6.193000e-01

Outputting figure to mutsig2_images.part000000000093/KRT33B.5_1243_10000_0.4527_0.8563_0.6193.png
                gene_name: KRT33B
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 25 percent done.
KRT72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.092251e-02	ci left: 2.256317e-01	ci right 2.423235e-01	k: 2339	n:10000
Cons ci ratio: 8.075213e-02	ci left: 1.829427e-01	ci right 1.984379e-01	k: 1906	n:10000
KS ci ratio: 6.218018e-02	ci left: 2.754728e-01	ci right 2.932529e-01	k: 2843	n:10000
KRT72   10000 perm   2 sec   (5162 perm/sec)   p_kst 2.843000e-01   p_cons 1.906000e-01   p_joint 2.339000e-01

Outputting figure to mutsig2_images.part000000000093/KRT72.5_1572_10000_0.2843_0.1906_0.2339.png
                gene_name: KRT72
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 26 percent done.
KRT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.997354e-02	ci left: 7.858368e-01	ci right 8.017917e-01	k: 7939	n:10000
Cons ci ratio: 3.380079e-02	ci left: 5.637364e-01	ci right 5.832208e-01	k: 5735	n:10000
KS ci ratio: 2.807057e-02	ci left: 6.516263e-01	ci right 6.702799e-01	k: 6610	n:10000
KRT9   10000 perm   2 sec   (5959 perm/sec)   p_kst 6.610000e-01   p_cons 5.735000e-01   p_joint 7.939000e-01

Outputting figure to mutsig2_images.part000000000093/KRT9.5_1900_10000_0.661_0.5735_0.7939.png
                gene_name: KRT9
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 28 percent done.
KLRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.161163e-02	ci left: 7.584861e-01	ci right 7.751582e-01	k: 7669	n:10000
KS ci ratio: 7.968333e-03	ci left: 9.563913e-01	ci right 9.641376e-01	k: 9604	n:10000
KLRB1   10000 perm   2 sec   (5885 perm/sec)   p_kst 9.604000e-01   p_cons 7.669000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KLRB1.4_702_10000_0.9604_0.7669_1.png
                gene_name: KLRB1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
KNG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.233604e-02	ci left: 1.456039e-01	ci right 1.597991e-01	k: 1526	n:10000
Cons ci ratio: 2.786419e-02	ci left: 6.549475e-01	ci right 6.735567e-01	k: 6643	n:10000
KS ci ratio: 1.289403e-01	ci left: 7.912021e-02	ci right 9.012318e-02	k: 845	n:10000
KNG1   10000 perm   2 sec   (5598 perm/sec)   p_kst 8.450000e-02   p_cons 6.643000e-01   p_joint 1.526000e-01

Joint ci ratio: 5.841046e-02	ci left: 1.784039e-01	ci right 1.891882e-01	k: 3675	n:20000
Cons ci ratio: 1.923294e-02	ci left: 6.684587e-01	ci right 6.814904e-01	k: 13500	n:20000
KS ci ratio: 9.033333e-02	ci left: 8.214981e-02	ci right 8.997103e-02	k: 1720	n:20000
KNG1   20000 perm   4 sec   (5043 perm/sec)   p_kst 8.600000e-02   p_cons 6.750000e-01   p_joint 1.837500e-01

Outputting figure to mutsig2_images.part000000000093/KNG1.4_2060_20000_0.086_0.675_0.18375.png
                gene_name: KNG1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 31 percent done.
KPNA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.522255e-02	ci left: 8.622295e-01	ci right 8.755548e-01	k: 8690	n:10000
Cons ci ratio: 3.664360e-02	ci left: 5.237637e-01	ci right 5.434167e-01	k: 5336	n:10000
KS ci ratio: 1.733220e-02	ci left: 8.291039e-01	ci right 8.436996e-01	k: 8365	n:10000
KPNA5   10000 perm   2 sec   (6064 perm/sec)   p_kst 8.365000e-01   p_cons 5.336000e-01   p_joint 8.690000e-01

Outputting figure to mutsig2_images.part000000000093/KPNA5.4_1676_10000_0.8365_0.5336_0.869.png
                gene_name: KPNA5
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 32 percent done.
KPNA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.328347e-02	ci left: 7.304755e-01	ci right 7.477850e-01	k: 7392	n:10000
Cons ci ratio: 5.054278e-02	ci left: 3.659962e-01	ci right 3.850763e-01	k: 3755	n:10000
KS ci ratio: 2.937825e-02	ci left: 6.308041e-01	ci right 6.497141e-01	k: 6403	n:10000
KPNA6   10000 perm   2 sec   (5936 perm/sec)   p_kst 6.403000e-01   p_cons 3.755000e-01   p_joint 7.392000e-01

Outputting figure to mutsig2_images.part000000000093/KPNA6.4_1667_10000_0.6403_0.3755_0.7392.png
                gene_name: KPNA6
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 34 percent done.
KRT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.889140e-02	ci left: 1.901300e-01	ci right 2.058463e-01	k: 1979	n:10000
Cons ci ratio: 4.025877e-02	ci left: 4.767588e-01	ci right 4.964490e-01	k: 4866	n:10000
KS ci ratio: 1.511704e-01	ci left: 5.821938e-02	ci right 6.783712e-02	k: 629	n:10000
KRT1   10000 perm   2 sec   (6015 perm/sec)   p_kst 6.290000e-02   p_cons 4.866000e-01   p_joint 1.979000e-01

Joint ci ratio: 6.089053e-02	ci left: 1.663977e-01	ci right 1.768979e-01	k: 3432	n:20000
Cons ci ratio: 2.831606e-02	ci left: 4.823490e-01	ci right 4.962541e-01	k: 9786	n:20000
KS ci ratio: 1.079513e-01	ci left: 5.850174e-02	ci right 6.522634e-02	k: 1236	n:20000
KRT1   20000 perm   4 sec   (5369 perm/sec)   p_kst 6.180000e-02   p_cons 4.893000e-01   p_joint 1.716000e-01

Joint ci ratio: 6.688442e-02	ci left: 9.928680e-02	ci right 1.061903e-01	k: 3081	n:30000
Cons ci ratio: 2.313908e-02	ci left: 4.832281e-01	ci right 4.945740e-01	k: 14667	n:30000
KS ci ratio: 8.939448e-02	ci left: 5.753446e-02	ci right 6.295109e-02	k: 1806	n:30000
KRT1   30000 perm   6 sec   (5111 perm/sec)   p_kst 6.020000e-02   p_cons 4.889000e-01   p_joint 1.027000e-01

Outputting figure to mutsig2_images.part000000000093/KRT1.4_1971_30000_0.0602_0.4889_0.1027.png
                gene_name: KRT1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.11 

Current progress: 35 percent done.
KRT13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.810189e-02	ci left: 6.511231e-01	ci right 6.697834e-01	k: 6605	n:10000
Cons ci ratio: 8.134096e-03	ci left: 9.547186e-01	ci right 9.626113e-01	k: 9588	n:10000
KS ci ratio: 7.194651e-02	ci left: 2.205969e-01	ci right 2.371614e-01	k: 2288	n:10000
KRT13   10000 perm   2 sec   (5096 perm/sec)   p_kst 2.288000e-01   p_cons 9.588000e-01   p_joint 6.605000e-01

Outputting figure to mutsig2_images.part000000000093/KRT13.4_1409_10000_0.2288_0.9588_0.6605.png
                gene_name: KRT13
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 37 percent done.
KRT31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.951784e-02	ci left: 1.876681e-01	ci right 2.033097e-01	k: 1954	n:10000
Cons ci ratio: 8.540610e-02	ci left: 1.665170e-01	ci right 1.814734e-01	k: 1739	n:10000
KS ci ratio: 6.899925e-02	ci left: 2.355088e-01	ci right 2.524406e-01	k: 2439	n:10000
KRT31   10000 perm   2 sec   (6620 perm/sec)   p_kst 2.439000e-01   p_cons 1.739000e-01   p_joint 1.954000e-01

Outputting figure to mutsig2_images.part000000000093/KRT31.4_1279_10000_0.2439_0.1739_0.1954.png
                gene_name: KRT31
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 38 percent done.
KRT34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.556785e-02	ci left: 5.385833e-01	ci right 5.581885e-01	k: 5484	n:10000
Cons ci ratio: 3.086197e-02	ci left: 6.076906e-01	ci right 6.268410e-01	k: 6173	n:10000
KS ci ratio: 4.406368e-02	ci left: 4.319352e-01	ci right 4.514988e-01	k: 4417	n:10000
KRT34   10000 perm   2 sec   (5875 perm/sec)   p_kst 4.417000e-01   p_cons 6.173000e-01   p_joint 5.484000e-01

Outputting figure to mutsig2_images.part000000000093/KRT34.4_1339_10000_0.4417_0.6173_0.5484.png
                gene_name: KRT34
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 40 percent done.
KRT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.533341e-02	ci left: 2.559738e-01	ci right 2.733635e-01	k: 2646	n:10000
Cons ci ratio: 9.291121e-02	ci left: 1.440348e-01	ci right 1.581691e-01	k: 1510	n:10000
KS ci ratio: 7.400364e-02	ci left: 2.109269e-01	ci right 2.272370e-01	k: 2190	n:10000
KRT5   10000 perm   2 sec   (4938 perm/sec)   p_kst 2.190000e-01   p_cons 1.510000e-01   p_joint 2.646000e-01

Outputting figure to mutsig2_images.part000000000093/KRT5.4_1809_10000_0.219_0.151_0.2646.png
                gene_name: KRT5
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 42 percent done.
KRT6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.450053e-02	ci left: 1.398191e-01	ci right 1.537873e-01	k: 1467	n:10000
Cons ci ratio: 8.268642e-02	ci left: 1.758581e-01	ci right 1.911268e-01	k: 1834	n:10000
KS ci ratio: 8.438058e-02	ci left: 1.699576e-01	ci right 1.850308e-01	k: 1774	n:10000
KRT6A   10000 perm   2 sec   (6187 perm/sec)   p_kst 1.774000e-01   p_cons 1.834000e-01   p_joint 1.467000e-01

Outputting figure to mutsig2_images.part000000000093/KRT6A.4_1731_10000_0.1774_0.1834_0.1467.png
                gene_name: KRT6A
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 43 percent done.
KRT73
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.181872e-01	ci left: 9.321372e-02	ci right 1.050210e-01	k: 990	n:10000
Cons ci ratio: 5.195093e-02	ci left: 3.532680e-01	ci right 3.722120e-01	k: 3627	n:10000
KS ci ratio: 1.547402e-01	ci left: 5.561671e-02	ci right 6.504144e-02	k: 602	n:10000
KRT73   10000 perm   2 sec   (5666 perm/sec)   p_kst 6.020000e-02   p_cons 3.627000e-01   p_joint 9.900000e-02

Joint ci ratio: 7.738791e-02	ci left: 1.092827e-01	ci right 1.181299e-01	k: 2273	n:20000
Cons ci ratio: 3.679439e-02	ci left: 3.553351e-01	ci right 3.687050e-01	k: 7240	n:20000
KS ci ratio: 1.109456e-01	ci left: 5.548160e-02	ci right 6.204742e-02	k: 1174	n:20000
KRT73   20000 perm   4 sec   (5254 perm/sec)   p_kst 5.870000e-02   p_cons 3.620000e-01   p_joint 1.136500e-01

Joint ci ratio: 8.244977e-02	ci left: 6.717056e-02	ci right 7.297970e-02	k: 2101	n:30000
Cons ci ratio: 2.990960e-02	ci left: 3.586186e-01	ci right 3.695411e-01	k: 10922	n:30000
KS ci ratio: 9.123533e-02	ci left: 5.531599e-02	ci right 6.063668e-02	k: 1738	n:30000
KRT73   30000 perm   6 sec   (5057 perm/sec)   p_kst 5.793333e-02   p_cons 3.640667e-01   p_joint 7.003333e-02

Outputting figure to mutsig2_images.part000000000093/KRT73.4_1659_30000_0.057933_0.36407_0.070033.png
                gene_name: KRT73
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.073 

Current progress: 45 percent done.
KRT74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.335644e-01	ci left: 7.398022e-02	ci right 8.466637e-02	k: 792	n:10000
Cons ci ratio: 2.639009e-02	ci left: 6.789163e-01	ci right 6.971741e-01	k: 6881	n:10000
KS ci ratio: 2.166412e-01	ci left: 2.825837e-02	ci right 3.521793e-02	k: 316	n:10000
KRT74   10000 perm   2 sec   (5047 perm/sec)   p_kst 3.160000e-02   p_cons 6.881000e-01   p_joint 7.920000e-02

Joint ci ratio: 9.579764e-02	ci left: 7.353756e-02	ci right 8.098590e-02	k: 1544	n:20000
Cons ci ratio: 1.847667e-02	ci left: 6.859011e-01	ci right 6.987429e-01	k: 13847	n:20000
KS ci ratio: 1.552265e-01	ci left: 2.849702e-02	ci right 3.334063e-02	k: 617	n:20000
KRT74   20000 perm   4 sec   (4716 perm/sec)   p_kst 3.085000e-02   p_cons 6.923500e-01   p_joint 7.720000e-02

Joint ci ratio: 7.547369e-02	ci left: 7.937784e-02	ci right 8.563663e-02	k: 2474	n:30000
Cons ci ratio: 1.475012e-02	ci left: 6.966543e-01	ci right 7.070399e-01	k: 21056	n:30000
KS ci ratio: 1.260431e-01	ci left: 2.926149e-02	ci right 3.322998e-02	k: 936	n:30000
KRT74   30000 perm   7 sec   (4482 perm/sec)   p_kst 3.120000e-02   p_cons 7.018667e-01   p_joint 8.246667e-02

Joint ci ratio: 7.231909e-02	ci left: 6.594512e-02	ci right 7.091776e-02	k: 2736	n:40000
Cons ci ratio: 1.285242e-02	ci left: 6.947793e-01	ci right 7.037917e-01	k: 27972	n:40000
KS ci ratio: 1.083685e-01	ci left: 2.995595e-02	ci right 3.341248e-02	k: 1266	n:40000
KRT74   40000 perm   9 sec   (4443 perm/sec)   p_kst 3.165000e-02   p_cons 6.993000e-01   p_joint 6.840000e-02

Joint ci ratio: 6.392784e-02	ci left: 6.769978e-02	ci right 7.219031e-02	k: 3496	n:50000
Cons ci ratio: 1.151691e-02	ci left: 6.944762e-01	ci right 7.025408e-01	k: 34926	n:50000
KS ci ratio: 9.390127e-02	ci left: 3.209629e-02	ci right 3.527815e-02	k: 1683	n:50000
KRT74   50000 perm   11 sec   (4401 perm/sec)   p_kst 3.366000e-02   p_cons 6.985200e-01   p_joint 6.992000e-02

Outputting figure to mutsig2_images.part000000000093/KRT74.4_1626_50000_0.03366_0.69852_0.06992.png
                gene_name: KRT74
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.072 

Current progress: 46 percent done.
KRT78
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.622758e-02	ci left: 4.085072e-01	ci right 4.279405e-01	k: 4182	n:10000
Cons ci ratio: 5.302402e-02	ci left: 3.439253e-01	ci right 3.627602e-01	k: 3533	n:10000
KS ci ratio: 6.933755e-02	ci left: 2.337305e-01	ci right 2.506200e-01	k: 2421	n:10000
KRT78   10000 perm   2 sec   (5575 perm/sec)   p_kst 2.421000e-01   p_cons 3.533000e-01   p_joint 4.182000e-01

Outputting figure to mutsig2_images.part000000000093/KRT78.4_1599_10000_0.2421_0.3533_0.4182.png
                gene_name: KRT78
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 48 percent done.
KLRC3
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.198987e-02	ci left: 5.905209e-01	ci right 6.098207e-01	k: 6002	n:10000
Cons ci ratio: 1.360814e-02	ci left: 8.862643e-01	ci right 8.985060e-01	k: 8925	n:10000
KS ci ratio: 4.472179e-02	ci left: 4.246552e-01	ci right 4.441830e-01	k: 4344	n:10000
KLRC3   10000 perm   1 sec   (6709 perm/sec)   p_kst 4.344000e-01   p_cons 8.925000e-01   p_joint 6.002000e-01

Outputting figure to mutsig2_images.part000000000093/KLRC3.2_847_10000_0.4344_0.8925_0.6002.png
                gene_name: KLRC3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 49 percent done.
KLRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.022950e-02	ci left: 7.815789e-01	ci right 7.976520e-01	k: 7897	n:10000
KS ci ratio: 1.718632e-02	ci left: 8.314445e-01	ci right 8.459577e-01	k: 8388	n:10000
KLRF1   10000 perm   2 sec   (5921 perm/sec)   p_kst 8.388000e-01   p_cons 7.897000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KLRF1.3_723_10000_0.8388_0.7897_1.png
                gene_name: KLRF1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
KLRK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.000918e-03	ci left: 9.963117e-01	ci right 9.983815e-01	k: 9975	n:10000
KS ci ratio: 1.201360e-02	ci left: 9.085394e-01	ci right 9.196180e-01	k: 9142	n:10000
KLRK1   10000 perm   1 sec   (6683 perm/sec)   p_kst 9.142000e-01   p_cons 9.975000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KLRK1.3_679_10000_0.9142_0.9975_1.png
                gene_name: KLRK1
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
KPNA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.451772e-02	ci left: 5.534115e-01	ci right 5.729516e-01	k: 5632	n:10000
Cons ci ratio: 8.636922e-02	ci left: 1.633724e-01	ci right 1.782199e-01	k: 1707	n:10000
KS ci ratio: 4.833233e-02	ci left: 3.870929e-01	ci right 4.063673e-01	k: 3967	n:10000
KPNA4   10000 perm   2 sec   (5519 perm/sec)   p_kst 3.967000e-01   p_cons 1.707000e-01   p_joint 5.632000e-01

Outputting figure to mutsig2_images.part000000000093/KPNA4.3_1634_10000_0.3967_0.1707_0.5632.png
                gene_name: KPNA4
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 54 percent done.
KPRP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.224355e-02	ci left: 4.527897e-01	ci right 4.724321e-01	k: 4626	n:10000
Cons ci ratio: 3.329911e-02	ci left: 5.710566e-01	ci right 5.904963e-01	k: 5808	n:10000
KS ci ratio: 6.278129e-02	ci left: 2.716109e-01	ci right 2.893171e-01	k: 2804	n:10000
KPRP   10000 perm   2 sec   (5826 perm/sec)   p_kst 2.804000e-01   p_cons 5.808000e-01   p_joint 4.626000e-01

Outputting figure to mutsig2_images.part000000000093/KPRP.3_1744_10000_0.2804_0.5808_0.4626.png
                gene_name: KPRP
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 55 percent done.
KRI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.175413e-02	ci left: 4.585802e-01	ci right 4.782382e-01	k: 4684	n:10000
Cons ci ratio: 1.675240e-02	ci left: 8.383675e-01	ci right 8.526306e-01	k: 8456	n:10000
KS ci ratio: 6.635571e-02	ci left: 2.500393e-01	ci right 2.673015e-01	k: 2586	n:10000
KRI1   10000 perm   2 sec   (5426 perm/sec)   p_kst 2.586000e-01   p_cons 8.456000e-01   p_joint 4.684000e-01

Outputting figure to mutsig2_images.part000000000093/KRI1.3_2206_10000_0.2586_0.8456_0.4684.png
                gene_name: KRI1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 57 percent done.
KRT222
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.720168e-02	ci left: 1.607198e-01	ci right 1.754741e-01	k: 1680	n:10000
Cons ci ratio: 9.491770e-02	ci left: 1.387411e-01	ci right 1.526660e-01	k: 1456	n:10000
KS ci ratio: 5.128351e-02	ci left: 3.592335e-01	ci right 3.782430e-01	k: 3687	n:10000
KRT222   10000 perm   1 sec   (6905 perm/sec)   p_kst 3.687000e-01   p_cons 1.456000e-01   p_joint 1.680000e-01

Outputting figure to mutsig2_images.part000000000093/KRT222.3_912_10000_0.3687_0.1456_0.168.png
                gene_name: KRT222
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 58 percent done.
KRT24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.143806e-02	ci left: 3.578414e-01	ci right 3.768359e-01	k: 3673	n:10000
Cons ci ratio: 2.578935e-02	ci left: 6.887938e-01	ci right 7.068908e-01	k: 6979	n:10000
KS ci ratio: 9.850717e-02	ci left: 1.299255e-01	ci right 1.434869e-01	k: 1366	n:10000
KRT24   10000 perm   2 sec   (5617 perm/sec)   p_kst 1.366000e-01   p_cons 6.979000e-01   p_joint 3.673000e-01

Outputting figure to mutsig2_images.part000000000093/KRT24.3_1610_10000_0.1366_0.6979_0.3673.png
                gene_name: KRT24
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 60 percent done.
KRT25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.683568e-02	ci left: 8.370436e-01	ci right 8.513552e-01	k: 8443	n:10000
KS ci ratio: 3.767188e-02	ci left: 5.099533e-01	ci right 5.296352e-01	k: 5198	n:10000
KRT25   10000 perm   2 sec   (5743 perm/sec)   p_kst 5.198000e-01   p_cons 8.443000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT25.3_1385_10000_0.5198_0.8443_1.png
                gene_name: KRT25
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
KRT26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.655280e-01	ci left: 4.868974e-02	ci right 5.757286e-02	k: 530	n:10000
Cons ci ratio: 5.963710e-02	ci left: 2.926135e-01	ci right 3.107021e-01	k: 3016	n:10000
KS ci ratio: 2.366646e-01	ci left: 2.353468e-02	ci right 2.994503e-02	k: 266	n:10000
KRT26   10000 perm   2 sec   (5543 perm/sec)   p_kst 2.660000e-02   p_cons 3.016000e-01   p_joint 5.300000e-02

Joint ci ratio: 8.884463e-02	ci left: 8.474573e-02	ci right 9.267431e-02	k: 1773	n:20000
Cons ci ratio: 4.087049e-02	ci left: 3.085645e-01	ci right 3.214893e-01	k: 6300	n:20000
KS ci ratio: 1.639141e-01	ci left: 2.551743e-02	ci right 3.012122e-02	k: 555	n:20000
KRT26   20000 perm   4 sec   (5005 perm/sec)   p_kst 2.775000e-02   p_cons 3.150000e-01   p_joint 8.865000e-02

Joint ci ratio: 7.874493e-02	ci left: 7.328763e-02	ci right 7.932806e-02	k: 2288	n:30000
Cons ci ratio: 3.315154e-02	ci left: 3.125986e-01	ci right 3.231700e-01	k: 9536	n:30000
KS ci ratio: 1.343342e-01	ci left: 2.574314e-02	ci right 2.948243e-02	k: 827	n:30000
KRT26   30000 perm   6 sec   (4826 perm/sec)   p_kst 2.756667e-02   p_cons 3.178667e-01   p_joint 7.626667e-02

Joint ci ratio: 1.093076e-01	ci left: 2.944481e-02	ci right 3.287370e-02	k: 1245	n:40000
Cons ci ratio: 2.960949e-02	ci left: 3.001414e-01	ci right 3.091870e-01	k: 12186	n:40000
KS ci ratio: 1.156390e-01	ci left: 2.630795e-02	ci right 2.956107e-02	k: 1116	n:40000
KRT26   40000 perm   8 sec   (4740 perm/sec)   p_kst 2.790000e-02   p_cons 3.046500e-01   p_joint 3.112500e-02

Joint ci ratio: 8.953594e-02	ci left: 3.526454e-02	ci right 3.858950e-02	k: 1845	n:50000
Cons ci ratio: 2.564714e-02	ci left: 3.143372e-01	ci right 3.225239e-01	k: 15921	n:50000
KS ci ratio: 1.044845e-01	ci left: 2.594762e-02	ci right 2.882760e-02	k: 1368	n:50000
KRT26   50000 perm   11 sec   (4662 perm/sec)   p_kst 2.736000e-02   p_cons 3.184200e-01   p_joint 3.690000e-02

Joint ci ratio: 8.436407e-02	ci left: 3.326611e-02	ci right 3.621245e-02	k: 2083	n:60000
Cons ci ratio: 2.350309e-02	ci left: 3.130282e-01	ci right 3.204895e-01	k: 19005	n:60000
KS ci ratio: 9.665272e-02	ci left: 2.539216e-02	ci right 2.798722e-02	k: 1600	n:60000
KRT26   60000 perm   13 sec   (4477 perm/sec)   p_kst 2.666667e-02   p_cons 3.167500e-01   p_joint 3.471667e-02

Outputting figure to mutsig2_images.part000000000093/KRT26.3_1439_60000_0.026667_0.31675_0.034717.png
                gene_name: KRT26
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 63 percent done.
KRT35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.532262e-02	ci left: 8.606980e-01	ci right 8.740872e-01	k: 8675	n:10000
Cons ci ratio: 4.155349e-02	ci left: 4.609766e-01	ci right 4.806404e-01	k: 4708	n:10000
KS ci ratio: 2.581381e-02	ci left: 6.883905e-01	ci right 7.064943e-01	k: 6975	n:10000
KRT35   10000 perm   2 sec   (5743 perm/sec)   p_kst 6.975000e-01   p_cons 4.708000e-01   p_joint 8.675000e-01

Outputting figure to mutsig2_images.part000000000093/KRT35.3_1396_10000_0.6975_0.4708_0.8675.png
                gene_name: KRT35
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 65 percent done.
KRT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.442281e-02	ci left: 2.614155e-01	ci right 2.789186e-01	k: 2701	n:10000
Cons ci ratio: 1.582507e-02	ci left: 8.529423e-01	ci right 8.666473e-01	k: 8599	n:10000
KS ci ratio: 9.183970e-02	ci left: 1.469770e-01	ci right 1.612251e-01	k: 1540	n:10000
KRT7   10000 perm   2 sec   (5447 perm/sec)   p_kst 1.540000e-01   p_cons 8.599000e-01   p_joint 2.701000e-01

Outputting figure to mutsig2_images.part000000000093/KRT7.3_1446_10000_0.154_0.8599_0.2701.png
                gene_name: KRT7
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 66 percent done.
KRT71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.461527e-02	ci left: 8.714250e-01	ci right 8.843539e-01	k: 8780	n:10000
Cons ci ratio: 3.805087e-02	ci left: 5.049514e-01	ci right 5.246400e-01	k: 5148	n:10000
KS ci ratio: 2.887637e-02	ci left: 6.387484e-01	ci right 6.575652e-01	k: 6482	n:10000
KRT71   10000 perm   2 sec   (6277 perm/sec)   p_kst 6.482000e-01   p_cons 5.148000e-01   p_joint 8.780000e-01

Outputting figure to mutsig2_images.part000000000093/KRT71.3_1608_10000_0.6482_0.5148_0.878.png
                gene_name: KRT71
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 68 percent done.
KRT79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.975457e-02	ci left: 4.830544e-01	ci right 5.027497e-01	k: 4929	n:10000
Cons ci ratio: 3.845652e-02	ci left: 4.996504e-01	ci right 5.193441e-01	k: 5095	n:10000
KS ci ratio: 5.030657e-02	ci left: 3.681846e-01	ci right 3.872867e-01	k: 3777	n:10000
KRT79   10000 perm   2 sec   (6119 perm/sec)   p_kst 3.777000e-01   p_cons 5.095000e-01   p_joint 4.929000e-01

Outputting figure to mutsig2_images.part000000000093/KRT79.3_1644_10000_0.3777_0.5095_0.4929.png
                gene_name: KRT79
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 69 percent done.
KPNA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.098259e-02	ci left: 4.678676e-01	ci right 4.875454e-01	k: 4777	n:10000
KS ci ratio: 2.713038e-02	ci left: 6.668278e-01	ci right 6.852695e-01	k: 6761	n:10000
KPNA3   10000 perm   2 sec   (6356 perm/sec)   p_kst 6.761000e-01   p_cons 4.777000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KPNA3.2_1634_10000_0.6761_0.4777_1.png
                gene_name: KPNA3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
KREMEN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.522255e-02	ci left: 8.622295e-01	ci right 8.755548e-01	k: 8690	n:10000
Cons ci ratio: 1.346599e-02	ci left: 8.883137e-01	ci right 9.004554e-01	k: 8945	n:10000
KS ci ratio: 5.915936e-02	ci left: 2.959840e-01	ci right 3.141297e-01	k: 3050	n:10000
KREMEN1   10000 perm   2 sec   (5782 perm/sec)   p_kst 3.050000e-01   p_cons 8.945000e-01   p_joint 8.690000e-01

Outputting figure to mutsig2_images.part000000000093/KREMEN1.2_1531_10000_0.305_0.8945_0.869.png
                gene_name: KREMEN1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 72 percent done.
KRT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.028186e-01	ci left: 1.203376e-01	ci right 1.334806e-01	k: 1268	n:10000
Cons ci ratio: 6.898055e-02	ci left: 2.356076e-01	ci right 2.525417e-01	k: 2440	n:10000
KS ci ratio: 5.698598e-02	ci left: 3.119521e-01	ci right 3.303522e-01	k: 3211	n:10000
KRT10   10000 perm   2 sec   (5080 perm/sec)   p_kst 3.211000e-01   p_cons 2.440000e-01   p_joint 1.268000e-01

Joint ci ratio: 4.021221e-02	ci left: 3.155754e-01	ci right 3.285763e-01	k: 6441	n:20000
Cons ci ratio: 4.729076e-02	ci left: 2.496152e-01	ci right 2.617559e-01	k: 5113	n:20000
KS ci ratio: 3.981958e-02	ci left: 3.198524e-01	ci right 3.328981e-01	k: 6527	n:20000
KRT10   20000 perm   4 sec   (5048 perm/sec)   p_kst 3.263500e-01   p_cons 2.556500e-01   p_joint 3.220500e-01

Outputting figure to mutsig2_images.part000000000093/KRT10.2_1787_20000_0.32635_0.25565_0.32205.png
                gene_name: KRT10
               theta_stop: 0.047 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 74 percent done.
KRT12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.152016e-02	ci left: 4.613760e-01	ci right 4.810407e-01	k: 4712	n:10000
Cons ci ratio: 2.138192e-02	ci left: 7.623325e-01	ci right 7.789096e-01	k: 7707	n:10000
KS ci ratio: 2.256183e-01	ci left: 2.598777e-02	ci right 3.269015e-02	k: 292	n:10000
KRT12   10000 perm   2 sec   (6001 perm/sec)   p_kst 2.920000e-02   p_cons 7.707000e-01   p_joint 4.712000e-01

Joint ci ratio: 4.068656e-02	ci left: 3.105035e-01	ci right 3.234497e-01	k: 6339	n:20000
Cons ci ratio: 1.451069e-02	ci left: 7.791392e-01	ci right 7.905778e-01	k: 15698	n:20000
KS ci ratio: 1.631610e-01	ci left: 2.575746e-02	ci right 3.038111e-02	k: 560	n:20000
KRT12   20000 perm   4 sec   (5417 perm/sec)   p_kst 2.800000e-02   p_cons 7.849000e-01   p_joint 3.169500e-01

Joint ci ratio: 4.852430e-02	ci left: 1.743135e-01	ci right 1.830155e-01	k: 5359	n:30000
Cons ci ratio: 1.190167e-02	ci left: 7.786611e-01	ci right 7.880173e-01	k: 23501	n:30000
KS ci ratio: 1.326147e-01	ci left: 2.642037e-02	ci right 3.020505e-02	k: 848	n:30000
KRT12   30000 perm   6 sec   (5211 perm/sec)   p_kst 2.826667e-02   p_cons 7.833667e-01   p_joint 1.786333e-01

Joint ci ratio: 5.431192e-02	ci left: 1.120868e-01	ci right 1.183692e-01	k: 4608	n:40000
Cons ci ratio: 1.033421e-02	ci left: 7.783990e-01	ci right 7.865099e-01	k: 31299	n:40000
KS ci ratio: 1.155326e-01	ci left: 2.635654e-02	ci right 2.961247e-02	k: 1118	n:40000
KRT12   40000 perm   8 sec   (5041 perm/sec)   p_kst 2.795000e-02   p_cons 7.824750e-01   p_joint 1.152000e-01

Joint ci ratio: 5.212976e-02	ci left: 9.894525e-02	ci right 1.042611e-01	k: 5079	n:50000
Cons ci ratio: 9.253369e-03	ci left: 7.784552e-01	ci right 7.857120e-01	k: 39105	n:50000
KS ci ratio: 1.027235e-01	ci left: 2.684441e-02	ci right 2.977070e-02	k: 1414	n:50000
KRT12   50000 perm   10 sec   (4837 perm/sec)   p_kst 2.828000e-02   p_cons 7.821000e-01   p_joint 1.015800e-01

Joint ci ratio: 3.889438e-02	ci left: 1.419601e-01	ci right 1.476076e-01	k: 8686	n:60000
Cons ci ratio: 8.442997e-03	ci left: 7.789425e-01	ci right 7.855636e-01	k: 46936	n:60000
KS ci ratio: 9.408756e-02	ci left: 2.679221e-02	ci right 2.945370e-02	k: 1686	n:60000
KRT12   60000 perm   13 sec   (4699 perm/sec)   p_kst 2.810000e-02   p_cons 7.822667e-01   p_joint 1.447667e-01

Outputting figure to mutsig2_images.part000000000093/KRT12.2_1517_60000_0.0281_0.78227_0.14477.png
                gene_name: KRT12
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 75 percent done.
KRT14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.238060e-02	ci left: 3.494907e-01	ci right 3.683915e-01	k: 3589	n:10000
Cons ci ratio: 2.583216e-02	ci left: 6.880881e-01	ci right 7.061970e-01	k: 6972	n:10000
KS ci ratio: 9.465171e-02	ci left: 1.394271e-01	ci right 1.533796e-01	k: 1463	n:10000
KRT14   10000 perm   2 sec   (6502 perm/sec)   p_kst 1.463000e-01   p_cons 6.972000e-01   p_joint 3.589000e-01

Outputting figure to mutsig2_images.part000000000093/KRT14.2_1451_10000_0.1463_0.6972_0.3589.png
                gene_name: KRT14
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 77 percent done.
KRT15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.191363e-02	ci left: 7.534265e-01	ci right 7.702207e-01	k: 7619	n:10000
KS ci ratio: 3.959588e-02	ci left: 4.850534e-01	ci right 5.047496e-01	k: 4949	n:10000
KRT15   10000 perm   1 sec   (6684 perm/sec)   p_kst 4.949000e-01   p_cons 7.619000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT15.2_1403_10000_0.4949_0.7619_1.png
                gene_name: KRT15
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
KRT16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.516108e-02	ci left: 6.991805e-01	ci right 7.170981e-01	k: 7082	n:10000
Cons ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
KS ci ratio: 2.012596e-02	ci left: 7.833022e-01	ci right 7.993277e-01	k: 7914	n:10000
KRT16   10000 perm   1 sec   (6673 perm/sec)   p_kst 7.914000e-01   p_cons 1.864000e-01   p_joint 7.082000e-01

Outputting figure to mutsig2_images.part000000000093/KRT16.2_1454_10000_0.7914_0.1864_0.7082.png
                gene_name: KRT16
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 80 percent done.
KRT17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.073996e-02	ci left: 7.730669e-01	ci right 7.893690e-01	k: 7813	n:10000
KS ci ratio: 2.940376e-02	ci left: 6.304019e-01	ci right 6.493165e-01	k: 6399	n:10000
KRT17   10000 perm   1 sec   (6668 perm/sec)   p_kst 6.399000e-01   p_cons 7.813000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT17.2_1331_10000_0.6399_0.7813_1.png
                gene_name: KRT17
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
KRT18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.355520e-02	ci left: 7.259294e-01	ci right 7.433338e-01	k: 7347	n:10000
Cons ci ratio: 3.416137e-02	ci left: 5.585233e-01	ci right 5.780369e-01	k: 5683	n:10000
KS ci ratio: 3.159811e-02	ci left: 5.964436e-01	ci right 6.156946e-01	k: 6061	n:10000
KRT18   10000 perm   2 sec   (6581 perm/sec)   p_kst 6.061000e-01   p_cons 5.683000e-01   p_joint 7.347000e-01

Outputting figure to mutsig2_images.part000000000093/KRT18.2_1321_10000_0.6061_0.5683_0.7347.png
                gene_name: KRT18
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 83 percent done.
KRT19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.352371e-02	ci left: 1.729074e-01	ci right 1.880792e-01	k: 1804	n:10000
Cons ci ratio: 9.283885e-02	ci left: 1.442309e-01	ci right 1.583729e-01	k: 1512	n:10000
KS ci ratio: 8.387610e-03	ci left: 9.521083e-01	ci right 9.602233e-01	k: 9563	n:10000
KRT19   10000 perm   2 sec   (6319 perm/sec)   p_kst 9.563000e-01   p_cons 1.512000e-01   p_joint 1.804000e-01

Outputting figure to mutsig2_images.part000000000093/KRT19.2_1227_10000_0.9563_0.1512_0.1804.png
                gene_name: KRT19
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 85 percent done.
KRT27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.715456e-02	ci left: 5.168576e-01	ci right 5.365269e-01	k: 5267	n:10000
KS ci ratio: 2.530113e-02	ci left: 6.968606e-01	ci right 7.148193e-01	k: 7059	n:10000
KRT27   10000 perm   2 sec   (6349 perm/sec)   p_kst 7.059000e-01   p_cons 5.267000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT27.2_1412_10000_0.7059_0.5267_1.png
                gene_name: KRT27
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
KRT32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.360775e-02	ci left: 5.665439e-01	ci right 5.860116e-01	k: 5763	n:10000
Cons ci ratio: 1.697625e-02	ci left: 8.348036e-01	ci right 8.491966e-01	k: 8421	n:10000
KS ci ratio: 4.372585e-02	ci left: 4.357256e-01	ci right 4.553061e-01	k: 4455	n:10000
KRT32   10000 perm   1 sec   (6822 perm/sec)   p_kst 4.455000e-01   p_cons 8.421000e-01   p_joint 5.763000e-01

Outputting figure to mutsig2_images.part000000000093/KRT32.2_1375_10000_0.4455_0.8421_0.5763.png
                gene_name: KRT32
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 88 percent done.
KRT33A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.303600e-02	ci left: 7.346186e-01	ci right 7.518395e-01	k: 7433	n:10000
Cons ci ratio: 4.244799e-02	ci left: 4.503941e-01	ci right 4.700291e-01	k: 4602	n:10000
KS ci ratio: 7.318717e-03	ci left: 9.626796e-01	ci right 9.698454e-01	k: 9664	n:10000
KRT33A   10000 perm   2 sec   (6459 perm/sec)   p_kst 9.664000e-01   p_cons 4.602000e-01   p_joint 7.433000e-01

Outputting figure to mutsig2_images.part000000000093/KRT33A.2_1243_10000_0.9664_0.4602_0.7433.png
                gene_name: KRT33A
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 89 percent done.
KRT36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.920559e-02	ci left: 2.344220e-01	ci right 2.513280e-01	k: 2428	n:10000
KS ci ratio: 3.483445e-02	ci left: 5.489020e-01	ci right 5.684638e-01	k: 5587	n:10000
KRT36   10000 perm   2 sec   (5910 perm/sec)   p_kst 5.587000e-01   p_cons 2.428000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT36.2_1432_10000_0.5587_0.2428_1.png
                gene_name: KRT36
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
KRT38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.043634e-02	ci left: 7.781330e-01	ci right 7.943000e-01	k: 7863	n:10000
KS ci ratio: 1.038389e-02	ci left: 9.294731e-01	ci right 9.392720e-01	k: 9345	n:10000
KRT38   10000 perm   2 sec   (6299 perm/sec)   p_kst 9.345000e-01   p_cons 7.863000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT38.2_1399_10000_0.9345_0.7863_1.png
                gene_name: KRT38
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
KRT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.162669e-02	ci left: 3.561511e-01	ci right 3.751272e-01	k: 3656	n:10000
Cons ci ratio: 2.269208e-02	ci left: 7.403801e-01	ci right 7.574747e-01	k: 7490	n:10000
KS ci ratio: 8.386407e-02	ci left: 1.717274e-01	ci right 1.868599e-01	k: 1792	n:10000
KRT4   10000 perm   2 sec   (6167 perm/sec)   p_kst 1.792000e-01   p_cons 7.490000e-01   p_joint 3.656000e-01

Outputting figure to mutsig2_images.part000000000093/KRT4.2_1821_10000_0.1792_0.749_0.3656.png
                gene_name: KRT4
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 94 percent done.
KRT40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.743137e-02	ci left: 1.960405e-01	ci right 2.119323e-01	k: 2039	n:10000
Cons ci ratio: 8.767228e-02	ci left: 1.592465e-01	ci right 1.739483e-01	k: 1665	n:10000
KS ci ratio: 3.855665e-02	ci left: 4.983503e-01	ci right 5.180449e-01	k: 5082	n:10000
KRT40   10000 perm   2 sec   (6368 perm/sec)   p_kst 5.082000e-01   p_cons 1.665000e-01   p_joint 2.039000e-01

Outputting figure to mutsig2_images.part000000000093/KRT40.2_1324_10000_0.5082_0.1665_0.2039.png
                gene_name: KRT40
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 95 percent done.
KRT6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.434278e-01	ci left: 6.449503e-02	ci right 7.455749e-02	k: 694	n:10000
Cons ci ratio: 1.531252e-01	ci left: 5.677313e-02	ci right 6.628428e-02	k: 614	n:10000
KS ci ratio: 4.226054e-02	ci left: 4.525901e-01	ci right 4.722318e-01	k: 4624	n:10000
KRT6B   10000 perm   2 sec   (5700 perm/sec)   p_kst 4.624000e-01   p_cons 6.140000e-02   p_joint 6.940000e-02

Joint ci ratio: 6.953848e-02	ci left: 1.323119e-01	ci right 1.418939e-01	k: 2741	n:20000
Cons ci ratio: 1.034758e-01	ci left: 6.347548e-02	ci right 7.045106e-02	k: 1338	n:20000
KS ci ratio: 2.991224e-02	ci left: 4.550215e-01	ci right 4.688895e-01	k: 9239	n:20000
KRT6B   20000 perm   4 sec   (5065 perm/sec)   p_kst 4.619500e-01   p_cons 6.690000e-02   p_joint 1.370500e-01

Joint ci ratio: 5.118494e-02	ci left: 1.593312e-01	ci right 1.677340e-01	k: 4905	n:30000
Cons ci ratio: 8.488528e-02	ci left: 6.354265e-02	ci right 6.920834e-02	k: 1990	n:30000
KS ci ratio: 2.432833e-02	ci left: 4.582439e-01	ci right 4.695631e-01	k: 13917	n:30000
KRT6B   30000 perm   6 sec   (4930 perm/sec)   p_kst 4.639000e-01   p_cons 6.633333e-02   p_joint 1.635000e-01

Outputting figure to mutsig2_images.part000000000093/KRT6B.2_1731_30000_0.4639_0.066333_0.1635.png
                gene_name: KRT6B
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 97 percent done.
KRT6C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.076832e-02	ci left: 9.247196e-01	ci right 9.348283e-01	k: 9299	n:10000
KS ci ratio: 1.733853e-02	ci left: 8.290021e-01	ci right 8.436014e-01	k: 8364	n:10000
KRT6C   10000 perm   2 sec   (6151 perm/sec)   p_kst 8.364000e-01   p_cons 9.299000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000093/KRT6C.2_1731_10000_0.8364_0.9299_1.png
                gene_name: KRT6C
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
KRT76
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.064023e-01	ci left: 1.131062e-01	ci right 1.259164e-01	k: 1194	n:10000
Cons ci ratio: 1.241134e-01	ci left: 8.504395e-02	ci right 9.639578e-02	k: 906	n:10000
KS ci ratio: 2.739085e-02	ci left: 6.625985e-01	ci right 6.811013e-01	k: 6719	n:10000
KRT76   10000 perm   2 sec   (6447 perm/sec)   p_kst 6.719000e-01   p_cons 9.060000e-02   p_joint 1.194000e-01

Joint ci ratio: 7.970010e-02	ci left: 1.035833e-01	ci right 1.122311e-01	k: 2157	n:20000
Cons ci ratio: 9.189018e-02	ci left: 7.955498e-02	ci right 8.726664e-02	k: 1667	n:20000
KS ci ratio: 1.940191e-02	ci left: 6.645896e-01	ci right 6.776607e-01	k: 13423	n:20000
KRT76   20000 perm   4 sec   (5698 perm/sec)   p_kst 6.711500e-01   p_cons 8.335000e-02   p_joint 1.078500e-01

Outputting figure to mutsig2_images.part000000000093/KRT76.2_1953_20000_0.67115_0.08335_0.10785.png
                gene_name: KRT76
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000093
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 93 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1707>
Subject: Job 9893993: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1707>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000094> was used as the working directory.
Started at Sat Oct  6 00:15:45 2012
Results reported at Sat Oct  6 03:14:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000094.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000094.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 94  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000094.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10881.60 sec.
    Max Memory :      3639 MB
    Max Swap   :      5994 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
94
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 94
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 94: processing genes 8385 - 8474
Calculating significance of each gene.
Using projection method.
8385	KRTAP1-1	1
8386	KRTAP1-3	1
8387	KRTAP1-5	1
8388	KRTAP10-1	1
8389	KRTAP10-10	1
8390	KRTAP10-11	7.506156e-01
8391	KRTAP10-12	5.267565e-01
8392	KRTAP10-2	1
8393	KRTAP10-3	1
8394	KRTAP10-4	9.106356e-01
8395	KRTAP10-5	1
8396	KRTAP10-6	1.902185e-01
8397	KRTAP10-7	5.796909e-01
8398	KRTAP10-8	4.297948e-01
8399	KRTAP10-9	5.868461e-01
8400	KRTAP11-1	4.702968e-02
8401	KRTAP12-1	2.056930e-01
8402	KRTAP12-2	1
8403	KRTAP12-3	1
8404	KRTAP12-4	1
8405	KRTAP13-1	6.718609e-02
8406	KRTAP13-2	1
8407	KRTAP13-3	3.535550e-01
8408	KRTAP13-4	1
8409	KRTAP15-1	7.783950e-02
8410	KRTAP17-1	2.395918e-01
8411	KRTAP19-1	4.235962e-01
8412	KRTAP19-2	7.301770e-02
8413	KRTAP19-3	3.141979e-01
8414	KRTAP19-4	1.502789e-01
8415	KRTAP19-5	5.529115e-03
8416	KRTAP19-6	3.182690e-03
8417	KRTAP19-7	1
8418	KRTAP19-8	1
8419	KRTAP20-1	1
8420	KRTAP20-2	1
8421	KRTAP21-1	1
8422	KRTAP21-2	1
8423	KRTAP22-1	3.785040e-02
8424	KRTAP23-1	1
8425	KRTAP24-1	5.965431e-01
8426	KRTAP26-1	2.541334e-01
8427	KRTAP27-1	2.848481e-02
8428	KRTAP3-1	1
8429	KRTAP3-2	1
8430	KRTAP3-3	1
8431	KRTAP4-1	4.197514e-01
8432	KRTAP4-12	1
8433	KRTAP4-2	1
8434	KRTAP4-3	4.982087e-02
8435	KRTAP4-4	1.983692e-01
8436	KRTAP4-5	1
8437	KRTAP5-1	1
8438	KRTAP5-10	1
8439	KRTAP5-11	4.894344e-01
8440	KRTAP5-2	2.925780e-01
8441	KRTAP5-3	4.550328e-01
8442	KRTAP5-5	1.219082e-05
8443	KRTAP5-6	3.542540e-01
8444	KRTAP5-7	1
8445	KRTAP5-8	1
8446	KRTAP5-9	4.283425e-01
8447	KRTAP6-1	1
8448	KRTAP6-2	3.487457e-03
8449	KRTAP6-3	1
8450	KRTAP8-1	2.902822e-01
8451	KRTAP9-2	3.979459e-01
8452	KRTAP9-3	1
8453	KRTAP9-4	1
8454	KRTAP9-8	1
8455	KRTAP9-9	1
8456	KRTCAP2	4.130974e-01
8457	KRTCAP3	6.727120e-01
8458	KRTDAP	1
In gene KSR1 the following bins exceed PROBCAP:
    COAD-AA-3678	categ 6	N = 2151    n = 1	mu =   2.96e-07
8459	KSR1	5.079479e-01
8460	KSR2	7.494608e-01
8461	KTELC1	5.610113e-01
8462	KTI12	1
8463	KTN1	2.189723e-01
8464	KY	1
8465	KYNU	1.734659e-01
8466	L1CAM	6.846318e-01
8467	L1TD1	8.467829e-02
8468	L2HGDH	1.681473e-01
8469	L3MBTL	1
8470	L3MBTL2	4.596106e-01
8471	L3MBTL3	7.289923e-01
8472	L3MBTL4	2.911494e-02
8473	LACE1	5.902410e-01
8474	LACRT	3.817463e-01
Done

Running MutSig 2:
Scatter job 94: processing genes 8385 - 8474
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
L1TD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.589183e-02	ci left: 2.527095e-01	ci right 2.700297e-01	k: 2613	n:10000
Cons ci ratio: 3.719929e-02	ci left: 5.162571e-01	ci right 5.359277e-01	k: 5261	n:10000
KS ci ratio: 8.366514e-02	ci left: 1.724157e-01	ci right 1.875712e-01	k: 1799	n:10000
L1TD1   10000 perm   2 sec   (4729 perm/sec)   p_kst 1.799000e-01   p_cons 5.261000e-01   p_joint 2.613000e-01

Outputting figure to mutsig2_images.part000000000094/L1TD1.8_2606_10000_0.1799_0.5261_0.2613.png
                gene_name: L1TD1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 4 percent done.
KTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.423853e-02	ci left: 7.145185e-01	ci right 7.321512e-01	k: 7234	n:10000
Cons ci ratio: 1.409920e-02	ci left: 8.790966e-01	ci right 8.916780e-01	k: 8855	n:10000
KS ci ratio: 3.687980e-02	ci left: 5.205606e-01	ci right 5.402216e-01	k: 5304	n:10000
KTN1   10000 perm   2 sec   (4828 perm/sec)   p_kst 5.304000e-01   p_cons 8.855000e-01   p_joint 7.234000e-01

Outputting figure to mutsig2_images.part000000000094/KTN1.7_4255_10000_0.5304_0.8855_0.7234.png
                gene_name: KTN1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 9 percent done.
KYNU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.152048e-03	ci left: 9.867570e-01	ci right 9.909509e-01	k: 9890	n:10000
KS ci ratio: 9.454540e-03	ci left: 9.404542e-01	ci right 9.494843e-01	k: 9451	n:10000
KYNU   10000 perm   2 sec   (5691 perm/sec)   p_kst 9.451000e-01   p_cons 9.890000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KYNU.7_1476_10000_0.9451_0.989_1.png
                gene_name: KYNU
               theta_stop: 0.0095 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
L3MBTL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.082627e-01	ci left: 1.095910e-01	ci right 1.222338e-01	k: 1158	n:10000
Cons ci ratio: 9.639384e-02	ci left: 1.350178e-01	ci right 1.487915e-01	k: 1418	n:10000
KS ci ratio: 1.244911e-01	ci left: 8.455810e-02	ci right 9.588194e-02	k: 901	n:10000
L3MBTL4   10000 perm   2 sec   (5371 perm/sec)   p_kst 9.010000e-02   p_cons 1.418000e-01   p_joint 1.158000e-01

Joint ci ratio: 9.059276e-02	ci left: 8.170910e-02	ci right 8.951187e-02	k: 1711	n:20000
Cons ci ratio: 6.855648e-02	ci left: 1.356621e-01	ci right 1.453426e-01	k: 2809	n:20000
KS ci ratio: 8.881717e-02	ci left: 8.479472e-02	ci right 9.272531e-02	k: 1774	n:20000
L3MBTL4   20000 perm   4 sec   (4841 perm/sec)   p_kst 8.870000e-02   p_cons 1.404500e-01   p_joint 8.555000e-02

Outputting figure to mutsig2_images.part000000000094/L3MBTL4.6_1944_20000_0.0887_0.14045_0.08555.png
                gene_name: L3MBTL4
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.090 

Current progress: 17 percent done.
KSR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.578376e-02	ci left: 5.355786e-01	ci right 5.551949e-01	k: 5454	n:10000
Cons ci ratio: 5.102021e-02	ci left: 3.616201e-01	ci right 3.806550e-01	k: 3711	n:10000
KS ci ratio: 4.613273e-02	ci left: 4.095037e-01	ci right 4.289434e-01	k: 4192	n:10000
KSR2   10000 perm   2 sec   (5245 perm/sec)   p_kst 4.192000e-01   p_cons 3.711000e-01   p_joint 5.454000e-01

Outputting figure to mutsig2_images.part000000000094/KSR2.5_2846_10000_0.4192_0.3711_0.5454.png
                gene_name: KSR2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 22 percent done.
KRTAP5-5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
KRTAP5-5   10000 perm   1 sec   (7044 perm/sec)   p_kst 2.000000e-04   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
KS ci ratio: 1.600053e+00	ci left: 8.117914e-05	ci right 5.833193e-04	k: 5	n:20000
KRTAP5-5   20000 perm   3 sec   (6209 perm/sec)   p_kst 2.500000e-04   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 1.600147e+00	ci left: 5.411836e-05	ci right 3.889012e-04	k: 5	n:30000
KS ci ratio: 1.239386e+00	ci left: 1.371880e-04	ci right 5.694167e-04	k: 9	n:30000
KRTAP5-5   30000 perm   5 sec   (5906 perm/sec)   p_kst 3.000000e-04   p_cons 1.666667e-04   p_joint 0

Joint ci ratio: 1.959878e+00	ci left: 1.546707e-05	ci right 2.191660e-04	k: 3	n:40000
Cons ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
KS ci ratio: 1.011937e+00	ci left: 1.913610e-04	ci right 5.871709e-04	k: 14	n:40000
KRTAP5-5   40000 perm   7 sec   (5711 perm/sec)   p_kst 3.500000e-04   p_cons 2.500000e-05   p_joint 7.500000e-05

Joint ci ratio: 1.959902e+00	ci left: 1.237361e-05	ci right 1.753353e-04	k: 3	n:50000
Cons ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
KS ci ratio: 9.237773e-01	ci left: 1.980746e-04	ci right 5.443173e-04	k: 17	n:50000
KRTAP5-5   50000 perm   9 sec   (5551 perm/sec)   p_kst 3.400000e-04   p_cons 2.000000e-05   p_joint 6.000000e-05

Joint ci ratio: 2.263138e+00	ci left: 4.036847e-06	ci right 1.204062e-04	k: 2	n:60000
Cons ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KS ci ratio: 7.999999e-01	ci left: 2.430155e-04	ci right 5.751330e-04	k: 23	n:60000
KRTAP5-5   60000 perm   11 sec   (5413 perm/sec)   p_kst 3.833333e-04   p_cons 1.666667e-05   p_joint 3.333333e-05

Joint ci ratio: 1.753002e+00	ci left: 1.556972e-05	ci right 1.463019e-04	k: 4	n:70000
Cons ci ratio: 2.263148e+00	ci left: 3.460151e-06	ci right 1.032060e-04	k: 2	n:70000
KS ci ratio: 7.038918e-01	ci left: 2.891734e-04	ci right 6.117563e-04	k: 30	n:70000
KRTAP5-5   70000 perm   13 sec   (5294 perm/sec)   p_kst 4.285714e-04   p_cons 2.857143e-05   p_joint 5.714286e-05

Joint ci ratio: 1.239528e+00	ci left: 5.144341e-05	ci right 2.135493e-04	k: 9	n:80000
Cons ci ratio: 1.753012e+00	ci left: 1.362348e-05	ci right 1.280149e-04	k: 4	n:80000
KS ci ratio: 6.357530e-01	ci left: 3.256629e-04	ci right 6.374395e-04	k: 37	n:80000
KRTAP5-5   80000 perm   15 sec   (5180 perm/sec)   p_kst 4.625000e-04   p_cons 5.000000e-05   p_joint 1.125000e-04

Joint ci ratio: 1.087128e+00	ci left: 6.889712e-05	ci right 2.328949e-04	k: 12	n:90000
Cons ci ratio: 1.481555e+00	ci left: 2.446587e-05	ci right 1.450996e-04	k: 6	n:90000
KS ci ratio: 5.976483e-01	ci left: 3.363523e-04	ci right 6.307460e-04	k: 42	n:90000
KRTAP5-5   90000 perm   18 sec   (5068 perm/sec)   p_kst 4.666667e-04   p_cons 6.666667e-05   p_joint 1.333333e-04

Joint ci ratio: 1.047585e+00	ci left: 6.922128e-05	ci right 2.222937e-04	k: 13	n:100000
Cons ci ratio: 1.481561e+00	ci left: 2.201925e-05	ci right 1.305901e-04	k: 6	n:100000
KS ci ratio: 5.716535e-01	ci left: 3.367969e-04	ci right 6.135284e-04	k: 46	n:100000
KRTAP5-5   100000 perm   20 sec   (4960 perm/sec)   p_kst 4.600000e-04   p_cons 6.000000e-05   p_joint 1.300000e-04

Joint ci ratio: 9.799243e-01	ci left: 7.632364e-05	ci right 2.249011e-04	k: 15	n:110000
Cons ci ratio: 1.306607e+00	ci left: 3.139898e-05	ci right 1.432967e-04	k: 8	n:110000
KS ci ratio: 5.383212e-01	ci left: 3.530749e-04	ci right 6.198733e-04	k: 52	n:110000
KRTAP5-5   110000 perm   23 sec   (4857 perm/sec)   p_kst 4.727273e-04   p_cons 7.272727e-05   p_joint 1.363636e-04

Joint ci ratio: 9.238797e-01	ci left: 8.252815e-05	ci right 2.268124e-04	k: 17	n:120000
Cons ci ratio: 1.239556e+00	ci left: 3.429533e-05	ci right 1.423686e-04	k: 9	n:120000
KS ci ratio: 5.102129e-01	ci left: 3.670351e-04	ci right 6.247762e-04	k: 58	n:120000
KRTAP5-5   120000 perm   25 sec   (4763 perm/sec)   p_kst 4.833333e-04   p_cons 7.500000e-05   p_joint 1.416667e-04

Joint ci ratio: 9.238853e-01	ci left: 7.617968e-05	ci right 2.093660e-04	k: 17	n:130000
Cons ci ratio: 1.239560e+00	ci left: 3.165719e-05	ci right 1.314175e-04	k: 9	n:130000
KS ci ratio: 5.017849e-01	ci left: 3.522204e-04	ci right 5.940521e-04	k: 60	n:130000
KRTAP5-5   130000 perm   28 sec   (4669 perm/sec)   p_kst 4.615385e-04   p_cons 6.923077e-05   p_joint 1.307692e-04

Joint ci ratio: 9.238902e-01	ci left: 7.073816e-05	ci right 1.944118e-04	k: 17	n:140000
Cons ci ratio: 1.239564e+00	ci left: 2.939593e-05	ci right 1.220308e-04	k: 9	n:140000
KS ci ratio: 4.937607e-01	ci left: 3.395524e-04	ci right 5.676874e-04	k: 62	n:140000
KRTAP5-5   140000 perm   31 sec   (4581 perm/sec)   p_kst 4.428571e-04   p_cons 6.428571e-05   p_joint 1.214286e-04

Joint ci ratio: 9.238943e-01	ci left: 6.602218e-05	ci right 1.814515e-04	k: 17	n:150000
Cons ci ratio: 1.239567e+00	ci left: 2.743618e-05	ci right 1.138956e-04	k: 9	n:150000
KS ci ratio: 4.898938e-01	ci left: 3.227542e-04	ci right 5.373309e-04	k: 63	n:150000
KRTAP5-5   150000 perm   33 sec   (4499 perm/sec)   p_kst 4.200000e-04   p_cons 6.000000e-05   p_joint 1.133333e-04

Joint ci ratio: 9.238980e-01	ci left: 6.189572e-05	ci right 1.701111e-04	k: 17	n:160000
Cons ci ratio: 1.239570e+00	ci left: 2.572139e-05	ci right 1.067773e-04	k: 9	n:160000
KS ci ratio: 4.824176e-01	ci left: 3.135487e-04	ci right 5.177701e-04	k: 65	n:160000
KRTAP5-5   160000 perm   36 sec   (4420 perm/sec)   p_kst 4.062500e-04   p_cons 5.625000e-05   p_joint 1.062500e-04

Joint ci ratio: 8.992568e-01	ci left: 6.275376e-05	ci right 1.673346e-04	k: 18	n:170000
Cons ci ratio: 1.239573e+00	ci left: 2.420835e-05	ci right 1.004965e-04	k: 9	n:170000
KS ci ratio: 4.587014e-01	ci left: 3.314000e-04	ci right 5.333359e-04	k: 72	n:170000
KRTAP5-5   170000 perm   39 sec   (4345 perm/sec)   p_kst 4.235294e-04   p_cons 5.294118e-05   p_joint 1.058824e-04

Joint ci ratio: 8.553619e-01	ci left: 6.787083e-05	ci right 1.715969e-04	k: 20	n:180000
Cons ci ratio: 1.239575e+00	ci left: 2.286343e-05	ci right 9.491344e-05	k: 9	n:180000
KS ci ratio: 4.495587e-01	ci left: 3.277484e-04	ci right 5.222677e-04	k: 75	n:180000
KRTAP5-5   180000 perm   42 sec   (4271 perm/sec)   p_kst 4.166667e-04   p_cons 5.000000e-05   p_joint 1.111111e-04

Joint ci ratio: 1.131568e+00	ci left: 2.890119e-05	ci right 1.035873e-04	k: 11	n:190000
Cons ci ratio: 1.239577e+00	ci left: 2.166008e-05	ci right 8.991811e-05	k: 9	n:190000
KS ci ratio: 4.354616e-01	ci left: 3.338822e-04	ci right 5.240095e-04	k: 80	n:190000
KRTAP5-5   190000 perm   45 sec   (4203 perm/sec)   p_kst 4.210526e-04   p_cons 4.736842e-05   p_joint 5.789474e-05

Joint ci ratio: 1.047625e+00	ci left: 3.461020e-05	ci right 1.111494e-04	k: 13	n:200000
Cons ci ratio: 1.239579e+00	ci left: 2.057707e-05	ci right 8.542229e-05	k: 9	n:200000
KS ci ratio: 4.201756e-01	ci left: 3.439584e-04	ci right 5.310197e-04	k: 86	n:200000
KRTAP5-5   200000 perm   48 sec   (4134 perm/sec)   p_kst 4.300000e-04   p_cons 4.500000e-05   p_joint 6.500000e-05

Joint ci ratio: 1.047627e+00	ci left: 3.296208e-05	ci right 1.058567e-04	k: 13	n:210000
Cons ci ratio: 1.239580e+00	ci left: 1.959720e-05	ci right 8.135464e-05	k: 9	n:210000
KS ci ratio: 4.042257e-01	ci left: 3.574573e-04	ci right 5.425029e-04	k: 93	n:210000
KRTAP5-5   210000 perm   52 sec   (4069 perm/sec)   p_kst 4.428571e-04   p_cons 4.285714e-05   p_joint 6.190476e-05

Joint ci ratio: 1.047628e+00	ci left: 3.146378e-05	ci right 1.010451e-04	k: 13	n:220000
Cons ci ratio: 1.239582e+00	ci left: 1.870641e-05	ci right 7.765677e-05	k: 9	n:220000
KS ci ratio: 3.999951e-01	ci left: 3.493803e-04	ci right 5.278500e-04	k: 95	n:220000
KRTAP5-5   220000 perm   55 sec   (4005 perm/sec)   p_kst 4.318182e-04   p_cons 4.090909e-05   p_joint 5.909091e-05

Joint ci ratio: 1.012104e+00	ci left: 3.327834e-05	ci right 1.021267e-04	k: 14	n:230000
Cons ci ratio: 1.239583e+00	ci left: 1.789308e-05	ci right 7.428045e-05	k: 9	n:230000
KS ci ratio: 3.861617e-01	ci left: 3.616175e-04	ci right 5.383268e-04	k: 102	n:230000
KRTAP5-5   230000 perm   58 sec   (3945 perm/sec)   p_kst 4.434783e-04   p_cons 3.913043e-05   p_joint 6.086957e-05

Joint ci ratio: 1.012106e+00	ci left: 3.189173e-05	ci right 9.787149e-05	k: 14	n:240000
Cons ci ratio: 1.239584e+00	ci left: 1.714753e-05	ci right 7.118548e-05	k: 9	n:240000
KS ci ratio: 3.806592e-01	ci left: 3.578452e-04	ci right 5.295960e-04	k: 105	n:240000
KRTAP5-5   240000 perm   62 sec   (3890 perm/sec)   p_kst 4.375000e-04   p_cons 3.750000e-05   p_joint 5.833333e-05

Joint ci ratio: 1.012107e+00	ci left: 3.061605e-05	ci right 9.395670e-05	k: 14	n:250000
Cons ci ratio: 1.239586e+00	ci left: 1.646162e-05	ci right 6.833811e-05	k: 9	n:250000
KS ci ratio: 3.736744e-01	ci left: 3.580146e-04	ci right 5.259221e-04	k: 109	n:250000
KRTAP5-5   250000 perm   65 sec   (3817 perm/sec)   p_kst 4.360000e-04   p_cons 3.600000e-05   p_joint 5.600000e-05

Joint ci ratio: 9.799680e-01	ci left: 3.229029e-05	ci right 9.515291e-05	k: 15	n:260000
Cons ci ratio: 1.239587e+00	ci left: 1.582848e-05	ci right 6.570976e-05	k: 9	n:260000
KS ci ratio: 3.638810e-01	ci left: 3.651837e-04	ci right 5.308999e-04	k: 115	n:260000
KRTAP5-5   260000 perm   69 sec   (3761 perm/sec)   p_kst 4.423077e-04   p_cons 3.461538e-05   p_joint 5.769231e-05

Joint ci ratio: 9.239204e-01	ci left: 3.667866e-05	ci right 1.008079e-04	k: 17	n:270000
Cons ci ratio: 1.181898e+00	ci left: 1.776084e-05	ci right 6.811137e-05	k: 10	n:270000
KS ci ratio: 3.533733e-01	ci left: 3.752493e-04	ci right 5.394881e-04	k: 122	n:270000
KRTAP5-5   270000 perm   73 sec   (3707 perm/sec)   p_kst 4.518519e-04   p_cons 3.703704e-05   p_joint 6.296296e-05

Joint ci ratio: 8.553805e-01	ci left: 4.363096e-05	ci right 1.103135e-04	k: 20	n:280000
Cons ci ratio: 1.087185e+00	ci left: 2.214510e-05	ci right 7.486161e-05	k: 12	n:280000
KS ci ratio: 3.424113e-01	ci left: 3.879236e-04	ci right 5.512776e-04	k: 130	n:280000
KRTAP5-5   280000 perm   77 sec   (3655 perm/sec)   p_kst 4.642857e-04   p_cons 4.285714e-05   p_joint 7.142857e-05

Joint ci ratio: 8.553817e-01	ci left: 4.212642e-05	ci right 1.065096e-04	k: 20	n:290000
Cons ci ratio: 1.087186e+00	ci left: 2.138147e-05	ci right 7.228021e-05	k: 12	n:290000
KS ci ratio: 3.360578e-01	ci left: 3.903199e-04	ci right 5.509724e-04	k: 135	n:290000
KRTAP5-5   290000 perm   80 sec   (3604 perm/sec)   p_kst 4.655172e-04   p_cons 4.137931e-05   p_joint 6.896552e-05

Joint ci ratio: 8.357148e-01	ci left: 4.333161e-05	ci right 1.070005e-04	k: 21	n:300000
Cons ci ratio: 1.087187e+00	ci left: 2.066875e-05	ci right 6.987091e-05	k: 12	n:300000
KS ci ratio: 3.288807e-01	ci left: 3.956402e-04	ci right 5.542697e-04	k: 141	n:300000
KRTAP5-5   300000 perm   84 sec   (3554 perm/sec)   p_kst 4.700000e-04   p_cons 4.000000e-05   p_joint 7.000000e-05

Joint ci ratio: 8.173449e-01	ci left: 4.447562e-05	ci right 1.074441e-04	k: 22	n:310000
Cons ci ratio: 1.047639e+00	ci left: 2.232906e-05	ci right 7.170989e-05	k: 13	n:310000
KS ci ratio: 3.232390e-01	ci left: 3.976867e-04	ci right 5.538345e-04	k: 146	n:310000
KRTAP5-5   310000 perm   88 sec   (3506 perm/sec)   p_kst 4.709677e-04   p_cons 4.193548e-05   p_joint 7.096774e-05

Joint ci ratio: 8.001354e-01	ci left: 4.556311e-05	ci right 1.078459e-04	k: 23	n:320000
Cons ci ratio: 1.047640e+00	ci left: 2.163127e-05	ci right 6.946899e-05	k: 13	n:320000
KS ci ratio: 3.189293e-01	ci left: 3.967517e-04	ci right 5.500313e-04	k: 150	n:320000
KRTAP5-5   320000 perm   92 sec   (3460 perm/sec)   p_kst 4.687500e-04   p_cons 4.062500e-05   p_joint 7.187500e-05

Joint ci ratio: 8.001363e-01	ci left: 4.418240e-05	ci right 1.045779e-04	k: 23	n:330000
Cons ci ratio: 1.047640e+00	ci left: 2.097577e-05	ci right 6.736389e-05	k: 13	n:330000
KS ci ratio: 3.137765e-01	ci left: 3.986777e-04	ci right 5.497141e-04	k: 155	n:330000
KRTAP5-5   330000 perm   97 sec   (3415 perm/sec)   p_kst 4.696970e-04   p_cons 3.939394e-05   p_joint 6.969697e-05

Joint ci ratio: 8.001372e-01	ci left: 4.288290e-05	ci right 1.015021e-04	k: 23	n:340000
Cons ci ratio: 1.047641e+00	ci left: 2.035884e-05	ci right 6.538263e-05	k: 13	n:340000
KS ci ratio: 3.088657e-01	ci left: 4.005090e-04	ci right 5.493970e-04	k: 160	n:340000
KRTAP5-5   340000 perm   101 sec   (3371 perm/sec)   p_kst 4.705882e-04   p_cons 3.823529e-05   p_joint 6.764706e-05

Joint ci ratio: 8.001381e-01	ci left: 4.165766e-05	ci right 9.860207e-05	k: 23	n:350000
Cons ci ratio: 1.047642e+00	ci left: 1.977715e-05	ci right 6.351458e-05	k: 13	n:350000
KS ci ratio: 3.032659e-01	ci left: 4.048926e-04	ci right 5.521550e-04	k: 166	n:350000
KRTAP5-5   350000 perm   105 sec   (3328 perm/sec)   p_kst 4.742857e-04   p_cons 3.714286e-05   p_joint 6.571429e-05

Joint ci ratio: 7.839717e-01	ci left: 4.271504e-05	ci right 9.919310e-05	k: 24	n:360000
Cons ci ratio: 1.012117e+00	ci left: 2.126108e-05	ci right 6.524809e-05	k: 14	n:360000
KS ci ratio: 2.954085e-01	ci left: 4.167690e-04	ci right 5.636883e-04	k: 175	n:360000
KRTAP5-5   360000 perm   109 sec   (3288 perm/sec)   p_kst 4.861111e-04   p_cons 3.888889e-05   p_joint 6.666667e-05

Joint ci ratio: 7.543758e-01	ci left: 4.590337e-05	ci right 1.029605e-04	k: 26	n:370000
Cons ci ratio: 9.799775e-01	ci left: 2.269040e-05	ci right 6.686458e-05	k: 15	n:370000
KS ci ratio: 2.904979e-01	ci left: 4.205299e-04	ci right 5.658578e-04	k: 181	n:370000
KRTAP5-5   370000 perm   114 sec   (3247 perm/sec)   p_kst 4.891892e-04   p_cons 4.054054e-05   p_joint 7.027027e-05

Joint ci ratio: 7.278970e-01	ci left: 4.896316e-05	ci right 1.064925e-04	k: 28	n:380000
Cons ci ratio: 9.239298e-01	ci left: 2.606107e-05	ci right 7.162705e-05	k: 17	n:380000
KS ci ratio: 2.873576e-01	ci left: 4.192268e-04	ci right 5.622539e-04	k: 185	n:380000
KRTAP5-5   380000 perm   118 sec   (3208 perm/sec)   p_kst 4.868421e-04   p_cons 4.473684e-05   p_joint 7.368421e-05

Joint ci ratio: 7.278977e-01	ci left: 4.770768e-05	ci right 1.037619e-04	k: 28	n:390000
Cons ci ratio: 9.239304e-01	ci left: 2.539283e-05	ci right 6.979049e-05	k: 17	n:390000
KS ci ratio: 2.835714e-01	ci left: 4.203802e-04	ci right 5.615730e-04	k: 190	n:390000
KRTAP5-5   390000 perm   123 sec   (3171 perm/sec)   p_kst 4.871795e-04   p_cons 4.358974e-05   p_joint 7.179487e-05

Joint ci ratio: 6.929361e-01	ci left: 5.265808e-05	ci right 1.100033e-04	k: 31	n:400000
Cons ci ratio: 8.765156e-01	ci left: 2.859834e-05	ci right 7.417614e-05	k: 19	n:400000
KS ci ratio: 2.757402e-01	ci left: 4.354432e-04	ci right 5.769561e-04	k: 201	n:400000
KRTAP5-5   400000 perm   128 sec   (3135 perm/sec)   p_kst 5.025000e-04   p_cons 4.750000e-05   p_joint 7.750000e-05

Joint ci ratio: 6.823561e-01	ci left: 5.338590e-05	ci right 1.101798e-04	k: 32	n:410000
Cons ci ratio: 8.765162e-01	ci left: 2.790081e-05	ci right 7.236699e-05	k: 19	n:410000
KS ci ratio: 2.730504e-01	ci left: 4.339075e-04	ci right 5.733098e-04	k: 205	n:410000
KRTAP5-5   410000 perm   132 sec   (3100 perm/sec)   p_kst 5.000000e-04   p_cons 4.634146e-05   p_joint 7.804878e-05

Joint ci ratio: 6.722464e-01	ci left: 5.408555e-05	ci right 1.103417e-04	k: 33	n:420000
Cons ci ratio: 8.765167e-01	ci left: 2.723650e-05	ci right 7.064399e-05	k: 19	n:420000
KS ci ratio: 2.685255e-01	ci left: 4.391118e-04	ci right 5.774547e-04	k: 212	n:420000
KRTAP5-5   420000 perm   137 sec   (3066 perm/sec)   p_kst 5.047619e-04   p_cons 4.523810e-05   p_joint 7.857143e-05

Joint ci ratio: 6.533052e-01	ci left: 5.669548e-05	ci right 1.131994e-04	k: 35	n:430000
Cons ci ratio: 8.553922e-01	ci left: 2.841073e-05	ci right 7.183253e-05	k: 20	n:430000
KS ci ratio: 2.624342e-01	ci left: 4.506086e-04	ci right 5.888248e-04	k: 222	n:430000
KRTAP5-5   430000 perm   142 sec   (3030 perm/sec)   p_kst 5.162791e-04   p_cons 4.651163e-05   p_joint 8.139535e-05

Joint ci ratio: 6.533059e-01	ci left: 5.540693e-05	ci right 1.106268e-04	k: 35	n:440000
Cons ci ratio: 8.553927e-01	ci left: 2.776503e-05	ci right 7.019999e-05	k: 20	n:440000
KS ci ratio: 2.567394e-01	ci left: 4.616166e-04	ci right 5.996446e-04	k: 232	n:440000
KRTAP5-5   440000 perm   147 sec   (2996 perm/sec)   p_kst 5.272727e-04   p_cons 4.545455e-05   p_joint 7.954545e-05

Joint ci ratio: 6.533065e-01	ci left: 5.417565e-05	ci right 1.081684e-04	k: 35	n:450000
Cons ci ratio: 8.553932e-01	ci left: 2.714803e-05	ci right 6.864001e-05	k: 20	n:450000
KS ci ratio: 2.545640e-01	ci left: 4.596777e-04	ci right 5.957764e-04	k: 236	n:450000
KRTAP5-5   450000 perm   152 sec   (2961 perm/sec)   p_kst 5.244444e-04   p_cons 4.444444e-05   p_joint 7.777778e-05

Joint ci ratio: 6.533071e-01	ci left: 5.299791e-05	ci right 1.058170e-04	k: 35	n:460000
Cons ci ratio: 8.553937e-01	ci left: 2.655785e-05	ci right 6.714785e-05	k: 20	n:460000
KS ci ratio: 2.529686e-01	ci left: 4.557916e-04	ci right 5.897606e-04	k: 239	n:460000
KRTAP5-5   460000 perm   157 sec   (2928 perm/sec)   p_kst 5.195652e-04   p_cons 4.347826e-05   p_joint 7.608696e-05

Joint ci ratio: 6.358816e-01	ci left: 5.542913e-05	ci right 1.085082e-04	k: 37	n:470000
Cons ci ratio: 8.357264e-01	ci left: 2.765836e-05	ci right 6.829862e-05	k: 21	n:470000
KS ci ratio: 2.483538e-01	ci left: 4.640403e-04	ci right 5.975614e-04	k: 248	n:470000
KRTAP5-5   470000 perm   162 sec   (2896 perm/sec)   p_kst 5.276596e-04   p_cons 4.468085e-05   p_joint 7.872340e-05

Joint ci ratio: 6.276762e-01	ci left: 5.602364e-05	ci right 1.086608e-04	k: 38	n:480000
Cons ci ratio: 8.357268e-01	ci left: 2.708214e-05	ci right 6.687575e-05	k: 21	n:480000
KS ci ratio: 2.454145e-01	ci left: 4.660996e-04	ci right 5.983839e-04	k: 254	n:480000
KRTAP5-5   480000 perm   168 sec   (2864 perm/sec)   p_kst 5.291667e-04   p_cons 4.375000e-05   p_joint 7.916667e-05

Joint ci ratio: 6.197805e-01	ci left: 5.659817e-05	ci right 1.088031e-04	k: 39	n:490000
Cons ci ratio: 8.357272e-01	ci left: 2.652944e-05	ci right 6.551095e-05	k: 21	n:490000
KS ci ratio: 2.430433e-01	ci left: 4.661670e-04	ci right 5.969994e-04	k: 259	n:490000
KRTAP5-5   490000 perm   173 sec   (2830 perm/sec)   p_kst 5.285714e-04   p_cons 4.285714e-05   p_joint 7.959184e-05

Joint ci ratio: 6.121754e-01	ci left: 5.715377e-05	ci right 1.089357e-04	k: 40	n:500000
Cons ci ratio: 8.357276e-01	ci left: 2.599884e-05	ci right 6.420075e-05	k: 21	n:500000
KS ci ratio: 2.407396e-01	ci left: 4.662376e-04	ci right 5.956643e-04	k: 264	n:500000
KRTAP5-5   500000 perm   179 sec   (2801 perm/sec)   p_kst 5.280000e-04   p_cons 4.200000e-05   p_joint 8.000000e-05

Joint ci ratio: 6.121759e-01	ci left: 5.603310e-05	ci right 1.067998e-04	k: 40	n:510000
Cons ci ratio: 8.357280e-01	ci left: 2.548906e-05	ci right 6.294192e-05	k: 21	n:510000
KS ci ratio: 2.389433e-01	ci left: 4.644674e-04	ci right 5.922983e-04	k: 268	n:510000
KRTAP5-5   510000 perm   184 sec   (2772 perm/sec)   p_kst 5.254902e-04   p_cons 4.117647e-05   p_joint 7.843137e-05

Joint ci ratio: 6.121764e-01	ci left: 5.495552e-05	ci right 1.047459e-04	k: 40	n:520000
Cons ci ratio: 8.357283e-01	ci left: 2.499888e-05	ci right 6.173152e-05	k: 21	n:520000
KS ci ratio: 2.380608e-01	ci left: 4.591516e-04	ci right 5.849837e-04	k: 270	n:520000
KRTAP5-5   520000 perm   189 sec   (2744 perm/sec)   p_kst 5.192308e-04   p_cons 4.038462e-05   p_joint 7.692308e-05

Joint ci ratio: 5.909371e-01	ci left: 5.871629e-05	ci right 1.092828e-04	k: 43	n:530000
Cons ci ratio: 8.357287e-01	ci left: 2.452720e-05	ci right 6.056678e-05	k: 21	n:530000
KS ci ratio: 2.363233e-01	ci left: 4.575870e-04	ci right 5.819412e-04	k: 274	n:530000
KRTAP5-5   530000 perm   195 sec   (2718 perm/sec)   p_kst 5.169811e-04   p_cons 3.962264e-05   p_joint 8.113208e-05

Joint ci ratio: 5.909376e-01	ci left: 5.762894e-05	ci right 1.072591e-04	k: 43	n:540000
Cons ci ratio: 8.357290e-01	ci left: 2.407299e-05	ci right 5.944519e-05	k: 21	n:540000
KS ci ratio: 2.337865e-01	ci left: 4.595700e-04	ci right 5.829287e-04	k: 280	n:540000
KRTAP5-5   540000 perm   200 sec   (2693 perm/sec)   p_kst 5.185185e-04   p_cons 3.888889e-05   p_joint 7.962963e-05

Joint ci ratio: 5.843347e-01	ci left: 5.812871e-05	ci right 1.073948e-04	k: 44	n:550000
Cons ci ratio: 8.173587e-01	ci left: 2.506795e-05	ci right 6.055986e-05	k: 22	n:550000
KS ci ratio: 2.313297e-01	ci left: 4.614878e-04	ci right 5.838735e-04	k: 286	n:550000
KRTAP5-5   550000 perm   206 sec   (2669 perm/sec)   p_kst 5.200000e-04   p_cons 4.000000e-05   p_joint 8.000000e-05

Joint ci ratio: 5.717663e-01	ci left: 6.013950e-05	ci right 1.095656e-04	k: 46	n:560000
Cons ci ratio: 8.001488e-01	ci left: 2.603594e-05	ci right 6.162668e-05	k: 23	n:560000
KS ci ratio: 2.289487e-01	ci left: 4.633436e-04	ci right 5.847780e-04	k: 292	n:560000
KRTAP5-5   560000 perm   212 sec   (2644 perm/sec)   p_kst 5.214286e-04   p_cons 4.107143e-05   p_joint 8.214286e-05

Joint ci ratio: 5.599754e-01	ci left: 6.209083e-05	ci right 1.116494e-04	k: 48	n:570000
Cons ci ratio: 7.687570e-01	ci left: 2.838385e-05	ci right 6.474482e-05	k: 25	n:570000
KS ci ratio: 2.266398e-01	ci left: 4.651405e-04	ci right 5.856446e-04	k: 298	n:570000
KRTAP5-5   570000 perm   218 sec   (2620 perm/sec)   p_kst 5.228070e-04   p_cons 4.385965e-05   p_joint 8.421053e-05

Joint ci ratio: 5.599759e-01	ci left: 6.102028e-05	ci right 1.097244e-04	k: 48	n:580000
Cons ci ratio: 7.687574e-01	ci left: 2.789447e-05	ci right 6.362854e-05	k: 25	n:580000
KS ci ratio: 2.255117e-01	ci left: 4.620002e-04	ci right 5.810123e-04	k: 301	n:580000
KRTAP5-5   580000 perm   223 sec   (2597 perm/sec)   p_kst 5.189655e-04   p_cons 4.310345e-05   p_joint 8.275862e-05

Joint ci ratio: 5.599763e-01	ci left: 5.998603e-05	ci right 1.078647e-04	k: 48	n:590000
Cons ci ratio: 7.687577e-01	ci left: 2.742168e-05	ci right 6.255010e-05	k: 25	n:590000
KS ci ratio: 2.251401e-01	ci left: 4.557688e-04	ci right 5.729553e-04	k: 302	n:590000
KRTAP5-5   590000 perm   229 sec   (2573 perm/sec)   p_kst 5.118644e-04   p_cons 4.237288e-05   p_joint 8.135593e-05

Joint ci ratio: 5.543482e-01	ci left: 6.041804e-05	ci right 1.079662e-04	k: 49	n:600000
Cons ci ratio: 7.687580e-01	ci left: 2.696465e-05	ci right 6.150761e-05	k: 25	n:600000
KS ci ratio: 2.240341e-01	ci left: 4.528913e-04	ci right 5.686870e-04	k: 305	n:600000
KRTAP5-5   600000 perm   235 sec   (2550 perm/sec)   p_kst 5.083333e-04   p_cons 4.166667e-05   p_joint 8.166667e-05

Joint ci ratio: 5.543485e-01	ci left: 5.942757e-05	ci right 1.061963e-04	k: 49	n:610000
Cons ci ratio: 7.687582e-01	ci left: 2.652260e-05	ci right 6.049930e-05	k: 25	n:610000
KS ci ratio: 2.236697e-01	ci left: 4.470141e-04	ci right 5.610956e-04	k: 306	n:610000
KRTAP5-5   610000 perm   241 sec   (2526 perm/sec)   p_kst 5.016393e-04   p_cons 4.098361e-05   p_joint 8.032787e-05

Joint ci ratio: 5.384300e-01	ci left: 6.263946e-05	ci right 1.099842e-04	k: 52	n:620000
Cons ci ratio: 7.543873e-01	ci left: 2.739383e-05	ci right 6.144460e-05	k: 26	n:620000
KS ci ratio: 2.204608e-01	ci left: 4.535132e-04	ci right 5.673676e-04	k: 315	n:620000
KRTAP5-5   620000 perm   248 sec   (2504 perm/sec)   p_kst 5.080645e-04   p_cons 4.193548e-05   p_joint 8.387097e-05

Joint ci ratio: 5.384303e-01	ci left: 6.164518e-05	ci right 1.082384e-04	k: 52	n:630000
Cons ci ratio: 7.543876e-01	ci left: 2.695900e-05	ci right 6.046930e-05	k: 26	n:630000
KS ci ratio: 2.197670e-01	ci left: 4.493140e-04	ci right 5.617113e-04	k: 317	n:630000
KRTAP5-5   630000 perm   254 sec   (2483 perm/sec)   p_kst 5.031746e-04   p_cons 4.126984e-05   p_joint 8.253968e-05

Joint ci ratio: 5.238087e-01	ci left: 6.474052e-05	ci right 1.118580e-04	k: 55	n:640000
Cons ci ratio: 7.156735e-01	ci left: 3.034670e-05	ci right 6.507567e-05	k: 29	n:640000
KS ci ratio: 2.173871e-01	ci left: 4.526323e-04	ci right 5.644698e-04	k: 324	n:640000
KRTAP5-5   640000 perm   260 sec   (2461 perm/sec)   p_kst 5.062500e-04   p_cons 4.531250e-05   p_joint 8.593750e-05

Joint ci ratio: 5.103170e-01	ci left: 6.775734e-05	ci right 1.153500e-04	k: 58	n:650000
Cons ci ratio: 7.040355e-01	ci left: 3.114002e-05	ci right 6.588684e-05	k: 30	n:650000
KS ci ratio: 2.160617e-01	ci left: 4.514885e-04	ci right 5.622730e-04	k: 328	n:650000
KRTAP5-5   650000 perm   267 sec   (2437 perm/sec)   p_kst 5.046154e-04   p_cons 4.615385e-05   p_joint 8.923077e-05

Joint ci ratio: 5.060464e-01	ci left: 6.805148e-05	ci right 1.153102e-04	k: 59	n:660000
Cons ci ratio: 6.929473e-01	ci left: 3.191385e-05	ci right 6.666908e-05	k: 31	n:660000
KS ci ratio: 2.137989e-01	ci left: 4.546831e-04	ci right 5.649297e-04	k: 335	n:660000
KRTAP5-5   660000 perm   273 sec   (2413 perm/sec)   p_kst 5.075758e-04   p_cons 4.696970e-05   p_joint 8.939394e-05

Joint ci ratio: 5.060468e-01	ci left: 6.703578e-05	ci right 1.135891e-04	k: 59	n:670000
Cons ci ratio: 6.929476e-01	ci left: 3.143752e-05	ci right 6.567403e-05	k: 31	n:670000
KS ci ratio: 2.112978e-01	ci left: 4.592016e-04	ci right 5.690727e-04	k: 343	n:670000
KRTAP5-5   670000 perm   281 sec   (2388 perm/sec)   p_kst 5.119403e-04   p_cons 4.626866e-05   p_joint 8.805970e-05

Joint ci ratio: 5.018817e-01	ci left: 6.733348e-05	ci right 1.135749e-04	k: 60	n:680000
Cons ci ratio: 6.823674e-01	ci left: 3.218842e-05	ci right 6.643237e-05	k: 32	n:680000
KS ci ratio: 2.100801e-01	ci left: 4.580206e-04	ci right 5.668963e-04	k: 347	n:680000
KRTAP5-5   680000 perm   287 sec   (2367 perm/sec)   p_kst 5.102941e-04   p_cons 4.705882e-05   p_joint 8.823529e-05

Joint ci ratio: 5.018820e-01	ci left: 6.635762e-05	ci right 1.119289e-04	k: 60	n:690000
Cons ci ratio: 6.823676e-01	ci left: 3.172191e-05	ci right 6.546960e-05	k: 32	n:690000
KS ci ratio: 2.094795e-01	ci left: 4.541288e-04	ci right 5.617312e-04	k: 349	n:690000
KRTAP5-5   690000 perm   294 sec   (2347 perm/sec)   p_kst 5.057971e-04   p_cons 4.637681e-05   p_joint 8.695652e-05

Joint ci ratio: 4.978181e-01	ci left: 6.665802e-05	ci right 1.119373e-04	k: 61	n:700000
Cons ci ratio: 6.823678e-01	ci left: 3.126874e-05	ci right 6.453432e-05	k: 32	n:700000
KS ci ratio: 2.082928e-01	ci left: 4.530566e-04	ci right 5.597192e-04	k: 353	n:700000
KRTAP5-5   700000 perm   301 sec   (2327 perm/sec)   p_kst 5.042857e-04   p_cons 4.571429e-05   p_joint 8.714286e-05

Joint ci ratio: 4.978184e-01	ci left: 6.571916e-05	ci right 1.103607e-04	k: 61	n:710000
Cons ci ratio: 6.823681e-01	ci left: 3.082833e-05	ci right 6.362540e-05	k: 32	n:710000
KS ci ratio: 2.074161e-01	ci left: 4.506809e-04	ci right 5.562809e-04	k: 356	n:710000
KRTAP5-5   710000 perm   308 sec   (2308 perm/sec)   p_kst 5.014085e-04   p_cons 4.507042e-05   p_joint 8.591549e-05

Joint ci ratio: 4.978187e-01	ci left: 6.480639e-05	ci right 1.088279e-04	k: 61	n:720000
Cons ci ratio: 6.823683e-01	ci left: 3.040016e-05	ci right 6.274172e-05	k: 32	n:720000
KS ci ratio: 2.062639e-01	ci left: 4.496892e-04	ci right 5.543977e-04	k: 360	n:720000
KRTAP5-5   720000 perm   314 sec   (2290 perm/sec)   p_kst 5.000000e-04   p_cons 4.444444e-05   p_joint 8.472222e-05

Joint ci ratio: 4.899782e-01	ci left: 6.631696e-05	ci right 1.104156e-04	k: 63	n:730000
Cons ci ratio: 6.625846e-01	ci left: 3.225499e-05	ci right 6.508377e-05	k: 34	n:730000
KS ci ratio: 2.051307e-01	ci left: 4.487263e-04	ci right 5.525646e-04	k: 364	n:730000
KRTAP5-5   730000 perm   322 sec   (2270 perm/sec)   p_kst 4.986301e-04   p_cons 4.657534e-05   p_joint 8.630137e-05

Joint ci ratio: 4.824968e-01	ci left: 6.779202e-05	ci right 1.119552e-04	k: 65	n:740000
Cons ci ratio: 6.625848e-01	ci left: 3.181911e-05	ci right 6.420427e-05	k: 34	n:740000
KS ci ratio: 2.031913e-01	ci left: 4.516384e-04	ci right 5.550398e-04	k: 371	n:740000
KRTAP5-5   740000 perm   329 sec   (2251 perm/sec)   p_kst 5.013514e-04   p_cons 4.594595e-05   p_joint 8.783784e-05

Joint ci ratio: 4.824971e-01	ci left: 6.688812e-05	ci right 1.104625e-04	k: 65	n:750000
Cons ci ratio: 6.625850e-01	ci left: 3.139485e-05	ci right 6.334822e-05	k: 34	n:750000
KS ci ratio: 2.021077e-01	ci left: 4.506792e-04	ci right 5.532429e-04	k: 375	n:750000
KRTAP5-5   750000 perm   336 sec   (2233 perm/sec)   p_kst 5.000000e-04   p_cons 4.533333e-05   p_joint 8.666667e-05

Joint ci ratio: 4.824974e-01	ci left: 6.600801e-05	ci right 1.090090e-04	k: 65	n:760000
Cons ci ratio: 6.625852e-01	ci left: 3.098176e-05	ci right 6.251470e-05	k: 34	n:760000
KS ci ratio: 2.013065e-01	ci left: 4.484972e-04	ci right 5.501099e-04	k: 378	n:760000
KRTAP5-5   760000 perm   343 sec   (2215 perm/sec)   p_kst 4.973684e-04   p_cons 4.473684e-05   p_joint 8.552632e-05

Joint ci ratio: 4.788831e-01	ci left: 6.629202e-05	ci right 1.090483e-04	k: 66	n:770000
Cons ci ratio: 6.625854e-01	ci left: 3.057939e-05	ci right 6.170282e-05	k: 34	n:770000
KS ci ratio: 1.997316e-01	ci left: 4.500736e-04	ci right 5.511485e-04	k: 384	n:770000
KRTAP5-5   770000 perm   350 sec   (2198 perm/sec)   p_kst 4.987013e-04   p_cons 4.415584e-05   p_joint 8.571429e-05

Joint ci ratio: 4.788833e-01	ci left: 6.544212e-05	ci right 1.076503e-04	k: 66	n:780000
Cons ci ratio: 6.625856e-01	ci left: 3.018735e-05	ci right 6.091177e-05	k: 34	n:780000
KS ci ratio: 1.981931e-01	ci left: 4.516126e-04	ci right 5.521575e-04	k: 390	n:780000
KRTAP5-5   780000 perm   358 sec   (2180 perm/sec)   p_kst 5.000000e-04   p_cons 4.358974e-05   p_joint 8.461538e-05

Joint ci ratio: 4.788836e-01	ci left: 6.461373e-05	ci right 1.062876e-04	k: 66	n:790000
Cons ci ratio: 6.625858e-01	ci left: 2.980523e-05	ci right 6.014074e-05	k: 34	n:790000
KS ci ratio: 1.976885e-01	ci left: 4.483020e-04	ci right 5.478252e-04	k: 392	n:790000
KRTAP5-5   790000 perm   365 sec   (2162 perm/sec)   p_kst 4.962025e-04   p_cons 4.303797e-05   p_joint 8.354430e-05

Joint ci ratio: 4.753493e-01	ci left: 6.490567e-05	ci right 1.063583e-04	k: 67	n:800000
Cons ci ratio: 6.625860e-01	ci left: 2.943266e-05	ci right 5.938899e-05	k: 34	n:800000
KS ci ratio: 1.961964e-01	ci left: 4.498285e-04	ci right 5.488467e-04	k: 398	n:800000
KRTAP5-5   800000 perm   373 sec   (2143 perm/sec)   p_kst 4.975000e-04   p_cons 4.250000e-05   p_joint 8.375000e-05

Joint ci ratio: 4.718922e-01	ci left: 6.519151e-05	ci right 1.064262e-04	k: 68	n:810000
Cons ci ratio: 6.625862e-01	ci left: 2.906929e-05	ci right 5.865580e-05	k: 34	n:810000
KS ci ratio: 1.952204e-01	ci left: 4.489713e-04	ci right 5.472508e-04	k: 402	n:810000
KRTAP5-5   810000 perm   381 sec   (2127 perm/sec)   p_kst 4.962963e-04   p_cons 4.197531e-05   p_joint 8.395062e-05

Joint ci ratio: 4.685093e-01	ci left: 6.547145e-05	ci right 1.064914e-04	k: 69	n:820000
Cons ci ratio: 6.533186e-01	ci left: 2.973040e-05	ci right 5.936112e-05	k: 35	n:820000
KS ci ratio: 1.935465e-01	ci left: 4.516173e-04	ci right 5.495284e-04	k: 409	n:820000
KRTAP5-5   820000 perm   389 sec   (2109 perm/sec)   p_kst 4.987805e-04   p_cons 4.268293e-05   p_joint 8.414634e-05

Joint ci ratio: 4.651982e-01	ci left: 6.574567e-05	ci right 1.065540e-04	k: 70	n:830000
Cons ci ratio: 6.533188e-01	ci left: 2.937220e-05	ci right 5.864594e-05	k: 35	n:830000
KS ci ratio: 1.926093e-01	ci left: 4.507624e-04	ci right 5.479596e-04	k: 413	n:830000
KRTAP5-5   830000 perm   397 sec   (2093 perm/sec)   p_kst 4.975904e-04   p_cons 4.216867e-05   p_joint 8.433735e-05

Joint ci ratio: 4.651985e-01	ci left: 6.496298e-05	ci right 1.052855e-04	k: 70	n:840000
Cons ci ratio: 6.533189e-01	ci left: 2.902253e-05	ci right 5.794778e-05	k: 35	n:840000
KS ci ratio: 1.919155e-01	ci left: 4.487957e-04	ci right 5.451794e-04	k: 416	n:840000
KRTAP5-5   840000 perm   404 sec   (2077 perm/sec)   p_kst 4.952381e-04   p_cons 4.166667e-05   p_joint 8.333333e-05

Joint ci ratio: 4.651987e-01	ci left: 6.419870e-05	ci right 1.040469e-04	k: 70	n:850000
Cons ci ratio: 6.533191e-01	ci left: 2.868108e-05	ci right 5.726604e-05	k: 35	n:850000
KS ci ratio: 1.912290e-01	ci left: 4.468758e-04	ci right 5.424641e-04	k: 419	n:850000
KRTAP5-5   850000 perm   412 sec   (2061 perm/sec)   p_kst 4.929412e-04   p_cons 4.117647e-05   p_joint 8.235294e-05

Joint ci ratio: 6.358936e-01	ci left: 3.029252e-05	ci right 5.930141e-05	k: 37	n:860000
Cons ci ratio: 6.533193e-01	ci left: 2.834758e-05	ci right 5.660016e-05	k: 35	n:860000
KS ci ratio: 1.887723e-01	ci left: 4.538621e-04	ci right 5.495545e-04	k: 430	n:860000
KRTAP5-5   860000 perm   420 sec   (2046 perm/sec)   p_kst 5.000000e-04   p_cons 4.069767e-05   p_joint 4.302326e-05

Joint ci ratio: 4.526228e-01	ci left: 6.678898e-05	ci right 1.067807e-04	k: 74	n:870000
Cons ci ratio: 6.444300e-01	ci left: 2.898172e-05	ci right 5.728595e-05	k: 36	n:870000
KS ci ratio: 1.872576e-01	ci left: 4.563126e-04	ci right 5.516620e-04	k: 437	n:870000
KRTAP5-5   870000 perm   428 sec   (2031 perm/sec)   p_kst 5.022989e-04   p_cons 4.137931e-05   p_joint 8.505747e-05

Joint ci ratio: 4.526231e-01	ci left: 6.603001e-05	ci right 1.055673e-04	k: 74	n:880000
Cons ci ratio: 6.444301e-01	ci left: 2.865238e-05	ci right 5.663498e-05	k: 36	n:880000
KS ci ratio: 1.866198e-01	ci left: 4.543767e-04	ci right 5.489616e-04	k: 440	n:880000
KRTAP5-5   880000 perm   437 sec   (2015 perm/sec)   p_kst 5.000000e-04   p_cons 4.090909e-05   p_joint 8.409091e-05

Joint ci ratio: 6.276883e-01	ci left: 3.021485e-05	ci right 5.860399e-05	k: 38	n:890000
Cons ci ratio: 6.444303e-01	ci left: 2.833044e-05	ci right 5.599864e-05	k: 36	n:890000
KS ci ratio: 1.859885e-01	ci left: 4.524849e-04	ci right 5.463214e-04	k: 443	n:890000
KRTAP5-5   890000 perm   445 sec   (2001 perm/sec)   p_kst 4.977528e-04   p_cons 4.044944e-05   p_joint 4.269663e-05

Joint ci ratio: 4.467061e-01	ci left: 6.653318e-05	ci right 1.056937e-04	k: 76	n:900000
Cons ci ratio: 6.358942e-01	ci left: 2.894618e-05	ci right 5.666581e-05	k: 37	n:900000
KS ci ratio: 1.853635e-01	ci left: 4.506357e-04	ci right 5.437393e-04	k: 446	n:900000
KRTAP5-5   900000 perm   453 sec   (1987 perm/sec)   p_kst 4.955556e-04   p_cons 4.111111e-05   p_joint 8.444444e-05

Joint ci ratio: 6.197925e-01	ci left: 3.047579e-05	ci right 5.858666e-05	k: 39	n:910000
Cons ci ratio: 6.358943e-01	ci left: 2.862808e-05	ci right 5.604311e-05	k: 37	n:910000
KS ci ratio: 1.849505e-01	ci left: 4.477795e-04	ci right 5.400638e-04	k: 448	n:910000
KRTAP5-5   910000 perm   461 sec   (1973 perm/sec)   p_kst 4.923077e-04   p_cons 4.065934e-05   p_joint 4.285714e-05

Joint ci ratio: 4.410153e-01	ci left: 6.701769e-05	ci right 1.058114e-04	k: 78	n:920000
Cons ci ratio: 6.276887e-01	ci left: 2.922958e-05	ci right 5.669301e-05	k: 38	n:920000
KS ci ratio: 1.833242e-01	ci left: 4.512073e-04	ci right 5.432895e-04	k: 456	n:920000
KRTAP5-5   920000 perm   470 sec   (1958 perm/sec)   p_kst 4.956522e-04   p_cons 4.130435e-05   p_joint 8.478261e-05

Joint ci ratio: 6.121873e-01	ci left: 3.072768e-05	ci right 5.856798e-05	k: 40	n:930000
Cons ci ratio: 6.276889e-01	ci left: 2.891528e-05	ci right 5.608341e-05	k: 38	n:930000
KS ci ratio: 1.823295e-01	ci left: 4.514859e-04	ci right 5.430698e-04	k: 461	n:930000
KRTAP5-5   930000 perm   478 sec   (1945 perm/sec)   p_kst 4.956989e-04   p_cons 4.086022e-05   p_joint 4.301075e-05

Joint ci ratio: 6.121875e-01	ci left: 3.040079e-05	ci right 5.794492e-05	k: 40	n:940000
Cons ci ratio: 6.276890e-01	ci left: 2.860767e-05	ci right 5.548678e-05	k: 38	n:940000
KS ci ratio: 1.813508e-01	ci left: 4.517599e-04	ci right 5.428534e-04	k: 466	n:940000
KRTAP5-5   940000 perm   487 sec   (1931 perm/sec)   p_kst 4.957447e-04   p_cons 4.042553e-05   p_joint 4.255319e-05

Joint ci ratio: 6.121876e-01	ci left: 3.008078e-05	ci right 5.733498e-05	k: 40	n:950000
Cons ci ratio: 6.276891e-01	ci left: 2.830653e-05	ci right 5.490272e-05	k: 38	n:950000
KS ci ratio: 1.805792e-01	ci left: 4.510243e-04	ci right 5.415402e-04	k: 470	n:950000
KRTAP5-5   950000 perm   496 sec   (1917 perm/sec)   p_kst 4.947368e-04   p_cons 4.000000e-05   p_joint 4.210526e-05

Joint ci ratio: 6.121878e-01	ci left: 2.976744e-05	ci right 5.673775e-05	k: 40	n:960000
Cons ci ratio: 6.276893e-01	ci left: 2.801167e-05	ci right 5.433082e-05	k: 38	n:960000
KS ci ratio: 1.792519e-01	ci left: 4.532895e-04	ci right 5.435188e-04	k: 477	n:960000
KRTAP5-5   960000 perm   504 sec   (1903 perm/sec)   p_kst 4.968750e-04   p_cons 3.958333e-05   p_joint 4.166667e-05

Joint ci ratio: 6.121879e-01	ci left: 2.946056e-05	ci right 5.615283e-05	k: 40	n:970000
Cons ci ratio: 6.276894e-01	ci left: 2.772289e-05	ci right 5.377071e-05	k: 38	n:970000
KS ci ratio: 1.785066e-01	ci left: 4.525554e-04	ci right 5.422237e-04	k: 481	n:970000
KRTAP5-5   970000 perm   513 sec   (1890 perm/sec)   p_kst 4.958763e-04   p_cons 3.917526e-05   p_joint 4.123711e-05

Joint ci ratio: 6.121880e-01	ci left: 2.915994e-05	ci right 5.557984e-05	k: 40	n:980000
Cons ci ratio: 6.276896e-01	ci left: 2.744000e-05	ci right 5.322203e-05	k: 38	n:980000
KS ci ratio: 1.775879e-01	ci left: 4.528122e-04	ci right 5.420200e-04	k: 486	n:980000
KRTAP5-5   980000 perm   522 sec   (1877 perm/sec)   p_kst 4.959184e-04   p_cons 3.877551e-05   p_joint 4.081633e-05

Joint ci ratio: 6.121882e-01	ci left: 2.886539e-05	ci right 5.501843e-05	k: 40	n:990000
Cons ci ratio: 6.276897e-01	ci left: 2.716283e-05	ci right 5.268444e-05	k: 38	n:990000
KS ci ratio: 1.765039e-01	ci left: 4.540304e-04	ci right 5.428739e-04	k: 492	n:990000
KRTAP5-5   990000 perm   531 sec   (1864 perm/sec)   p_kst 4.969697e-04   p_cons 3.838384e-05   p_joint 4.040404e-05

Joint ci ratio: 6.048561e-01	ci left: 2.942246e-05	ci right 5.562072e-05	k: 41	n:1000000
Cons ci ratio: 6.197937e-01	ci left: 2.773295e-05	ci right 5.331390e-05	k: 39	n:1000000
KS ci ratio: 1.757922e-01	ci left: 4.533137e-04	ci right 5.416214e-04	k: 496	n:1000000
KRTAP5-5   1000000 perm   540 sec   (1851 perm/sec)   p_kst 4.960000e-04   p_cons 3.900000e-05   p_joint 4.100000e-05

Joint ci ratio: 4.251656e-01	ci left: 6.633883e-05	ci right 1.029670e-04	k: 84	n:1010000
Cons ci ratio: 6.048563e-01	ci left: 2.913115e-05	ci right 5.507003e-05	k: 41	n:1010000
KS ci ratio: 1.745670e-01	ci left: 4.554523e-04	ci right 5.434930e-04	k: 503	n:1010000
KRTAP5-5   1010000 perm   549 sec   (1838 perm/sec)   p_kst 4.980198e-04   p_cons 4.059406e-05   p_joint 8.316832e-05

Joint ci ratio: 4.155008e-01	ci left: 6.919524e-05	ci right 1.062915e-04	k: 88	n:1020000
Cons ci ratio: 5.909492e-01	ci left: 3.050929e-05	ci right 5.678460e-05	k: 43	n:1020000
KS ci ratio: 1.735370e-01	ci left: 4.566132e-04	ci right 5.443030e-04	k: 509	n:1020000
KRTAP5-5   1020000 perm   559 sec   (1826 perm/sec)   p_kst 4.990196e-04   p_cons 4.215686e-05   p_joint 8.627451e-05

Joint ci ratio: 4.064665e-01	ci left: 7.200543e-05	ci right 1.095424e-04	k: 92	n:1030000
Cons ci ratio: 5.657898e-01	ci left: 3.352818e-05	ci right 6.067919e-05	k: 47	n:1030000
KS ci ratio: 1.725251e-01	ci left: 4.577531e-04	ci right 5.450957e-04	k: 515	n:1030000
KRTAP5-5   1030000 perm   568 sec   (1813 perm/sec)   p_kst 5.000000e-04   p_cons 4.563107e-05   p_joint 8.932039e-05

Joint ci ratio: 4.064667e-01	ci left: 7.131306e-05	ci right 1.084891e-04	k: 92	n:1040000
Cons ci ratio: 5.657899e-01	ci left: 3.320579e-05	ci right 6.009574e-05	k: 47	n:1040000
KS ci ratio: 1.718603e-01	ci left: 4.570320e-04	ci right 5.438662e-04	k: 519	n:1040000
KRTAP5-5   1040000 perm   577 sec   (1801 perm/sec)   p_kst 4.990385e-04   p_cons 4.519231e-05   p_joint 8.846154e-05

Joint ci ratio: 4.064669e-01	ci left: 7.063389e-05	ci right 1.074559e-04	k: 92	n:1050000
Cons ci ratio: 5.657901e-01	ci left: 3.288954e-05	ci right 5.952340e-05	k: 47	n:1050000
KS ci ratio: 1.708772e-01	ci left: 4.581485e-04	ci right 5.446456e-04	k: 525	n:1050000
KRTAP5-5   1050000 perm   587 sec   (1789 perm/sec)   p_kst 5.000000e-04   p_cons 4.476190e-05   p_joint 8.761905e-05

Joint ci ratio: 4.042990e-01	ci left: 7.081472e-05	ci right 1.074813e-04	k: 93	n:1060000
Cons ci ratio: 5.599868e-01	ci left: 3.338831e-05	ci right 6.003827e-05	k: 48	n:1060000
KS ci ratio: 1.703922e-01	ci left: 4.565357e-04	ci right 5.424585e-04	k: 528	n:1060000
KRTAP5-5   1060000 perm   597 sec   (1777 perm/sec)   p_kst 4.981132e-04   p_cons 4.528302e-05   p_joint 8.773585e-05

Joint ci ratio: 4.021655e-01	ci left: 7.099269e-05	ci right 1.075057e-04	k: 94	n:1070000
Cons ci ratio: 5.599869e-01	ci left: 3.307626e-05	ci right 5.947717e-05	k: 48	n:1070000
KS ci ratio: 1.695926e-01	ci left: 4.567431e-04	ci right 5.422603e-04	k: 533	n:1070000
KRTAP5-5   1070000 perm   606 sec   (1764 perm/sec)   p_kst 4.981308e-04   p_cons 4.485981e-05   p_joint 8.785047e-05

Joint ci ratio: 3.959616e-01	ci left: 7.283435e-05	ci right 1.095654e-04	k: 97	n:1080000
Cons ci ratio: 5.543586e-01	ci left: 3.356543e-05	ci right 5.998160e-05	k: 49	n:1080000
KS ci ratio: 1.686477e-01	ci left: 4.578344e-04	ci right 5.430298e-04	k: 539	n:1080000
KRTAP5-5   1080000 perm   616 sec   (1753 perm/sec)   p_kst 4.990741e-04   p_cons 4.537037e-05   p_joint 8.981481e-05

Joint ci ratio: 3.919818e-01	ci left: 7.381923e-05	ci right 1.105759e-04	k: 99	n:1090000
Cons ci ratio: 5.435930e-01	ci left: 3.483767e-05	ci right 6.151843e-05	k: 51	n:1090000
KS ci ratio: 1.677184e-01	ci left: 4.589070e-04	ci right 5.437839e-04	k: 545	n:1090000
KRTAP5-5   1090000 perm   626 sec   (1741 perm/sec)   p_kst 5.000000e-04   p_cons 4.678899e-05   p_joint 9.082569e-05

Joint ci ratio: 3.919820e-01	ci left: 7.314814e-05	ci right 1.095707e-04	k: 99	n:1100000
Cons ci ratio: 5.435931e-01	ci left: 3.452096e-05	ci right 6.095917e-05	k: 51	n:1100000
KS ci ratio: 1.672597e-01	ci left: 4.573480e-04	ci right 5.416820e-04	k: 548	n:1100000
KRTAP5-5   1100000 perm   636 sec   (1730 perm/sec)   p_kst 4.981818e-04   p_cons 4.636364e-05   p_joint 9.000000e-05

Joint ci ratio: 3.919822e-01	ci left: 7.248914e-05	ci right 1.085836e-04	k: 99	n:1110000
Cons ci ratio: 5.435932e-01	ci left: 3.420996e-05	ci right 6.041000e-05	k: 51	n:1110000
KS ci ratio: 1.659050e-01	ci left: 4.609979e-04	ci right 5.452477e-04	k: 557	n:1110000
KRTAP5-5   1110000 perm   646 sec   (1719 perm/sec)   p_kst 5.018018e-04   p_cons 4.594595e-05   p_joint 8.918919e-05

Joint ci ratio: 3.881200e-01	ci left: 7.345251e-05	ci right 1.095741e-04	k: 101	n:1120000
Cons ci ratio: 5.384404e-01	ci left: 3.467527e-05	ci right 6.088445e-05	k: 52	n:1120000
KS ci ratio: 1.653137e-01	ci left: 4.603053e-04	ci right 5.440987e-04	k: 561	n:1120000
KRTAP5-5   1120000 perm   656 sec   (1708 perm/sec)   p_kst 5.008929e-04   p_cons 4.642857e-05   p_joint 9.017857e-05

Joint ci ratio: 3.843698e-01	ci left: 7.440054e-05	ci right 1.105453e-04	k: 103	n:1130000
Cons ci ratio: 5.285596e-01	ci left: 3.589972e-05	ci right 6.235201e-05	k: 54	n:1130000
KS ci ratio: 1.645831e-01	ci left: 4.604739e-04	ci right 5.438910e-04	k: 566	n:1130000
KRTAP5-5   1130000 perm   666 sec   (1697 perm/sec)   p_kst 5.008850e-04   p_cons 4.778761e-05   p_joint 9.115044e-05

Joint ci ratio: 3.843699e-01	ci left: 7.374789e-05	ci right 1.095757e-04	k: 103	n:1140000
Cons ci ratio: 5.285597e-01	ci left: 3.558481e-05	ci right 6.180507e-05	k: 54	n:1140000
KS ci ratio: 1.638622e-01	ci left: 4.606404e-04	ci right 5.436860e-04	k: 571	n:1140000
KRTAP5-5   1140000 perm   676 sec   (1686 perm/sec)   p_kst 5.008772e-04   p_cons 4.736842e-05   p_joint 9.035088e-05

Joint ci ratio: 3.843701e-01	ci left: 7.310660e-05	ci right 1.086228e-04	k: 103	n:1150000
Cons ci ratio: 5.285598e-01	ci left: 3.527538e-05	ci right 6.126764e-05	k: 54	n:1150000
KS ci ratio: 1.637195e-01	ci left: 4.574687e-04	ci right 5.398636e-04	k: 572	n:1150000
KRTAP5-5   1150000 perm   687 sec   (1675 perm/sec)   p_kst 4.973913e-04   p_cons 4.695652e-05   p_joint 8.956522e-05

Joint ci ratio: 3.789431e-01	ci left: 7.481448e-05	ci right 1.105196e-04	k: 106	n:1160000
Cons ci ratio: 5.238192e-01	ci left: 3.571875e-05	ci right 6.171513e-05	k: 55	n:1160000
KS ci ratio: 1.625882e-01	ci left: 4.601400e-04	ci right 5.423874e-04	k: 580	n:1160000
KRTAP5-5   1160000 perm   697 sec   (1664 perm/sec)   p_kst 5.000000e-04   p_cons 4.741379e-05   p_joint 9.137931e-05

Joint ci ratio: 3.789432e-01	ci left: 7.417503e-05	ci right 1.095750e-04	k: 106	n:1170000
Cons ci ratio: 5.238193e-01	ci left: 3.541346e-05	ci right 6.118765e-05	k: 55	n:1170000
KS ci ratio: 1.623093e-01	ci left: 4.578470e-04	ci right 5.395305e-04	k: 582	n:1170000
KRTAP5-5   1170000 perm   708 sec   (1653 perm/sec)   p_kst 4.974359e-04   p_cons 4.700855e-05   p_joint 9.059829e-05

Joint ci ratio: 3.771848e-01	ci left: 7.431336e-05	ci right 1.095740e-04	k: 107	n:1180000
Cons ci ratio: 5.192039e-01	ci left: 3.584917e-05	ci right 6.162724e-05	k: 56	n:1180000
KS ci ratio: 1.617554e-01	ci left: 4.572194e-04	ci right 5.384854e-04	k: 586	n:1180000
KRTAP5-5   1180000 perm   719 sec   (1642 perm/sec)   p_kst 4.966102e-04   p_cons 4.745763e-05   p_joint 9.067797e-05

Joint ci ratio: 3.703876e-01	ci left: 7.673449e-05	ci right 1.123289e-04	k: 111	n:1190000
Cons ci ratio: 5.060569e-01	ci left: 3.774267e-05	ci right 6.395391e-05	k: 59	n:1190000
KS ci ratio: 1.602604e-01	ci left: 4.622485e-04	ci right 5.435760e-04	k: 597	n:1190000
KRTAP5-5   1190000 perm   729 sec   (1632 perm/sec)   p_kst 5.016807e-04   p_cons 4.957983e-05   p_joint 9.327731e-05

Joint ci ratio: 3.655242e-01	ci left: 7.836390e-05	ci right 1.141229e-04	k: 114	n:1200000
Cons ci ratio: 4.978274e-01	ci left: 3.888369e-05	ci right 6.529707e-05	k: 61	n:1200000
KS ci ratio: 1.590676e-01	ci left: 4.655969e-04	ci right 5.468456e-04	k: 606	n:1200000
KRTAP5-5   1200000 perm   740 sec   (1621 perm/sec)   p_kst 5.050000e-04   p_cons 5.083333e-05   p_joint 9.500000e-05

Joint ci ratio: 3.623865e-01	ci left: 7.921802e-05	ci right 1.149832e-04	k: 116	n:1210000
Cons ci ratio: 4.938605e-01	ci left: 3.928538e-05	ci right 6.568647e-05	k: 62	n:1210000
KS ci ratio: 1.582871e-01	ci left: 4.665108e-04	ci right 5.474816e-04	k: 612	n:1210000
KRTAP5-5   1210000 perm   751 sec   (1612 perm/sec)   p_kst 5.057851e-04   p_cons 5.123967e-05   p_joint 9.586777e-05

Joint ci ratio: 3.623866e-01	ci left: 7.856869e-05	ci right 1.140407e-04	k: 116	n:1220000
Cons ci ratio: 4.938606e-01	ci left: 3.896337e-05	ci right 6.514806e-05	k: 62	n:1220000
KS ci ratio: 1.580297e-01	ci left: 4.642613e-04	ci right 5.446983e-04	k: 614	n:1220000
KRTAP5-5   1220000 perm   761 sec   (1602 perm/sec)   p_kst 5.032787e-04   p_cons 5.081967e-05   p_joint 9.508197e-05

Joint ci ratio: 3.608478e-01	ci left: 7.866906e-05	ci right 1.140001e-04	k: 117	n:1230000
Cons ci ratio: 4.899871e-01	ci left: 3.935870e-05	ci right 6.553154e-05	k: 63	n:1230000
KS ci ratio: 1.572644e-01	ci left: 4.651725e-04	ci right 5.453401e-04	k: 620	n:1230000
KRTAP5-5   1230000 perm   772 sec   (1593 perm/sec)   p_kst 5.040650e-04   p_cons 5.121951e-05   p_joint 9.512195e-05

Joint ci ratio: 3.608479e-01	ci left: 7.803463e-05	ci right 1.130807e-04	k: 117	n:1240000
Cons ci ratio: 4.899872e-01	ci left: 3.904129e-05	ci right 6.500306e-05	k: 63	n:1240000
KS ci ratio: 1.565101e-01	ci left: 4.660698e-04	ci right 5.459707e-04	k: 626	n:1240000
KRTAP5-5   1240000 perm   783 sec   (1584 perm/sec)   p_kst 5.048387e-04   p_cons 5.080645e-05   p_joint 9.435484e-05

Joint ci ratio: 3.593286e-01	ci left: 7.813798e-05	ci right 1.130482e-04	k: 118	n:1250000
Cons ci ratio: 4.862033e-01	ci left: 3.943046e-05	ci right 6.538079e-05	k: 64	n:1250000
KS ci ratio: 1.557665e-01	ci left: 4.669538e-04	ci right 5.465903e-04	k: 632	n:1250000
KRTAP5-5   1250000 perm   794 sec   (1575 perm/sec)   p_kst 5.056000e-04   p_cons 5.120000e-05   p_joint 9.440000e-05

Joint ci ratio: 3.593287e-01	ci left: 7.751783e-05	ci right 1.121510e-04	k: 118	n:1260000
Cons ci ratio: 4.862034e-01	ci left: 3.911751e-05	ci right 6.486190e-05	k: 64	n:1260000
KS ci ratio: 1.547912e-01	ci left: 4.693503e-04	ci right 5.488480e-04	k: 640	n:1260000
KRTAP5-5   1260000 perm   805 sec   (1565 perm/sec)   p_kst 5.079365e-04   p_cons 5.079365e-05   p_joint 9.365079e-05

Joint ci ratio: 3.593288e-01	ci left: 7.690745e-05	ci right 1.112679e-04	k: 118	n:1270000
Cons ci ratio: 4.862035e-01	ci left: 3.880950e-05	ci right 6.435118e-05	k: 64	n:1270000
KS ci ratio: 1.541910e-01	ci left: 4.694395e-04	ci right 5.486154e-04	k: 645	n:1270000
KRTAP5-5   1270000 perm   816 sec   (1557 perm/sec)   p_kst 5.078740e-04   p_cons 5.039370e-05   p_joint 9.291339e-05

Joint ci ratio: 3.578285e-01	ci left: 7.701749e-05	ci right 1.112500e-04	k: 119	n:1280000
Cons ci ratio: 4.825060e-01	ci left: 3.919211e-05	ci right 6.472442e-05	k: 65	n:1280000
KS ci ratio: 1.532449e-01	ci left: 4.717816e-04	ci right 5.508195e-04	k: 653	n:1280000
KRTAP5-5   1280000 perm   827 sec   (1547 perm/sec)   p_kst 5.101562e-04   p_cons 5.078125e-05   p_joint 9.296875e-05

Joint ci ratio: 3.563468e-01	ci left: 7.712611e-05	ci right 1.112320e-04	k: 120	n:1290000
Cons ci ratio: 4.788916e-01	ci left: 3.956951e-05	ci right 6.509116e-05	k: 66	n:1290000
KS ci ratio: 1.522010e-01	ci left: 4.748346e-04	ci right 5.537927e-04	k: 662	n:1290000
KRTAP5-5   1290000 perm   839 sec   (1538 perm/sec)   p_kst 5.131783e-04   p_cons 5.116279e-05   p_joint 9.302326e-05

Joint ci ratio: 3.548833e-01	ci left: 7.723334e-05	ci right 1.112140e-04	k: 121	n:1300000
Cons ci ratio: 4.788917e-01	ci left: 3.926513e-05	ci right 6.459046e-05	k: 66	n:1300000
KS ci ratio: 1.518579e-01	ci left: 4.734019e-04	ci right 5.519282e-04	k: 665	n:1300000
KRTAP5-5   1300000 perm   850 sec   (1530 perm/sec)   p_kst 5.115385e-04   p_cons 5.076923e-05   p_joint 9.307692e-05

Joint ci ratio: 3.520096e-01	ci left: 7.803496e-05	ci right 1.120268e-04	k: 123	n:1310000
Cons ci ratio: 4.753573e-01	ci left: 3.963692e-05	ci right 6.495194e-05	k: 67	n:1310000
KS ci ratio: 1.514040e-01	ci left: 4.727257e-04	ci right 5.508842e-04	k: 669	n:1310000
KRTAP5-5   1310000 perm   861 sec   (1522 perm/sec)   p_kst 5.106870e-04   p_cons 5.114504e-05   p_joint 9.389313e-05

Joint ci ratio: 3.464654e-01	ci left: 8.020832e-05	ci right 1.144731e-04	k: 127	n:1320000
Cons ci ratio: 4.685170e-01	ci left: 4.067152e-05	ci right 6.615402e-05	k: 69	n:1320000
KS ci ratio: 1.505080e-01	ci left: 4.749762e-04	ci right 5.530001e-04	k: 677	n:1320000
KRTAP5-5   1320000 perm   872 sec   (1513 perm/sec)   p_kst 5.128788e-04   p_cons 5.227273e-05   p_joint 9.621212e-05

Joint ci ratio: 3.464655e-01	ci left: 7.960525e-05	ci right 1.136124e-04	k: 127	n:1330000
Cons ci ratio: 4.685171e-01	ci left: 4.036572e-05	ci right 6.565663e-05	k: 69	n:1330000
KS ci ratio: 1.501762e-01	ci left: 4.735757e-04	ci right 5.511827e-04	k: 680	n:1330000
KRTAP5-5   1330000 perm   884 sec   (1505 perm/sec)   p_kst 5.112782e-04   p_cons 5.187970e-05   p_joint 9.548872e-05

Joint ci ratio: 3.451200e-01	ci left: 7.969264e-05	ci right 1.135754e-04	k: 128	n:1340000
Cons ci ratio: 4.685172e-01	ci left: 4.006448e-05	ci right 6.516666e-05	k: 69	n:1340000
KS ci ratio: 1.493017e-01	ci left: 4.757881e-04	ci right 5.532630e-04	k: 688	n:1340000
KRTAP5-5   1340000 perm   896 sec   (1496 perm/sec)   p_kst 5.134328e-04   p_cons 5.149254e-05   p_joint 9.552239e-05

Joint ci ratio: 3.437901e-01	ci left: 7.977899e-05	ci right 1.135387e-04	k: 129	n:1350000
Cons ci ratio: 4.652060e-01	ci left: 4.042128e-05	ci right 6.551125e-05	k: 70	n:1350000
KS ci ratio: 1.486557e-01	ci left: 4.765425e-04	ci right 5.537748e-04	k: 694	n:1350000
KRTAP5-5   1350000 perm   907 sec   (1488 perm/sec)   p_kst 5.140741e-04   p_cons 5.185185e-05   p_joint 9.555556e-05

Joint ci ratio: 3.437902e-01	ci left: 7.919238e-05	ci right 1.127038e-04	k: 129	n:1360000
Cons ci ratio: 4.652061e-01	ci left: 4.012406e-05	ci right 6.502955e-05	k: 70	n:1360000
KS ci ratio: 1.482299e-01	ci left: 4.758704e-04	ci right 5.527532e-04	k: 698	n:1360000
KRTAP5-5   1360000 perm   919 sec   (1479 perm/sec)   p_kst 5.132353e-04   p_cons 5.147059e-05   p_joint 9.485294e-05

Joint ci ratio: 3.437903e-01	ci left: 7.861433e-05	ci right 1.118812e-04	k: 129	n:1370000
Cons ci ratio: 4.652062e-01	ci left: 3.983118e-05	ci right 6.455489e-05	k: 70	n:1370000
KS ci ratio: 1.477025e-01	ci left: 4.759114e-04	ci right 5.525032e-04	k: 703	n:1370000
KRTAP5-5   1370000 perm   931 sec   (1471 perm/sec)   p_kst 5.131387e-04   p_cons 5.109489e-05   p_joint 9.416058e-05

Joint ci ratio: 3.424756e-01	ci left: 7.870686e-05	ci right 1.118573e-04	k: 130	n:1380000
Cons ci ratio: 4.619642e-01	ci left: 4.018252e-05	ci right 6.489582e-05	k: 71	n:1380000
KS ci ratio: 1.471808e-01	ci left: 4.759523e-04	ci right 5.522563e-04	k: 708	n:1380000
KRTAP5-5   1380000 perm   943 sec   (1463 perm/sec)   p_kst 5.130435e-04   p_cons 5.144928e-05   p_joint 9.420290e-05

Joint ci ratio: 3.424757e-01	ci left: 7.814062e-05	ci right 1.110526e-04	k: 130	n:1390000
Cons ci ratio: 4.619643e-01	ci left: 3.989344e-05	ci right 6.442895e-05	k: 71	n:1390000
KS ci ratio: 1.467674e-01	ci left: 4.753001e-04	ci right 5.512667e-04	k: 712	n:1390000
KRTAP5-5   1390000 perm   955 sec   (1455 perm/sec)   p_kst 5.122302e-04   p_cons 5.107914e-05   p_joint 9.352518e-05

Joint ci ratio: 3.424758e-01	ci left: 7.758246e-05	ci right 1.102594e-04	k: 130	n:1400000
Cons ci ratio: 4.619644e-01	ci left: 3.960848e-05	ci right 6.396875e-05	k: 71	n:1400000
KS ci ratio: 1.460522e-01	ci left: 4.767219e-04	ci right 5.525121e-04	k: 719	n:1400000
KRTAP5-5   1400000 perm   967 sec   (1448 perm/sec)   p_kst 5.135714e-04   p_cons 5.071429e-05   p_joint 9.285714e-05

Joint ci ratio: 3.424760e-01	ci left: 7.703223e-05	ci right 1.094774e-04	k: 130	n:1410000
Cons ci ratio: 4.619645e-01	ci left: 3.932757e-05	ci right 6.351507e-05	k: 71	n:1410000
KS ci ratio: 1.458499e-01	ci left: 4.747075e-04	ci right 5.500638e-04	k: 721	n:1410000
KRTAP5-5   1410000 perm   980 sec   (1439 perm/sec)   p_kst 5.113475e-04   p_cons 5.035461e-05   p_joint 9.219858e-05

Joint ci ratio: 3.411762e-01	ci left: 7.713353e-05	ci right 1.094709e-04	k: 131	n:1420000
Cons ci ratio: 4.587893e-01	ci left: 3.967314e-05	ci right 6.385316e-05	k: 72	n:1420000
KS ci ratio: 1.452476e-01	ci left: 4.754360e-04	ci right 5.505692e-04	k: 727	n:1420000
KRTAP5-5   1420000 perm   992 sec   (1431 perm/sec)   p_kst 5.119718e-04   p_cons 5.070423e-05   p_joint 9.225352e-05

Joint ci ratio: 3.386204e-01	ci left: 7.787337e-05	ci right 1.102229e-04	k: 133	n:1430000
Cons ci ratio: 4.587894e-01	ci left: 3.939570e-05	ci right 6.340664e-05	k: 72	n:1430000
KS ci ratio: 1.446527e-01	ci left: 4.761549e-04	ci right 5.510670e-04	k: 733	n:1430000
KRTAP5-5   1430000 perm   1004 sec   (1424 perm/sec)   p_kst 5.125874e-04   p_cons 5.034965e-05   p_joint 9.300699e-05

Joint ci ratio: 3.386205e-01	ci left: 7.733258e-05	ci right 1.094574e-04	k: 133	n:1440000
Cons ci ratio: 4.587895e-01	ci left: 3.912212e-05	ci right 6.296632e-05	k: 72	n:1440000
KS ci ratio: 1.441625e-01	ci left: 4.761951e-04	ci right 5.508377e-04	k: 738	n:1440000
KRTAP5-5   1440000 perm   1016 sec   (1417 perm/sec)   p_kst 5.125000e-04   p_cons 5.000000e-05   p_joint 9.236111e-05

Joint ci ratio: 3.373641e-01	ci left: 7.743038e-05	ci right 1.094505e-04	k: 134	n:1450000
Cons ci ratio: 4.587896e-01	ci left: 3.885231e-05	ci right 6.253207e-05	k: 72	n:1450000
KS ci ratio: 1.435807e-01	ci left: 4.769000e-04	ci right 5.513256e-04	k: 744	n:1450000
KRTAP5-5   1450000 perm   1029 sec   (1409 perm/sec)   p_kst 5.131034e-04   p_cons 4.965517e-05   p_joint 9.241379e-05

Joint ci ratio: 3.373642e-01	ci left: 7.690003e-05	ci right 1.087009e-04	k: 134	n:1460000
Cons ci ratio: 4.587897e-01	ci left: 3.858620e-05	ci right 6.210377e-05	k: 72	n:1460000
KS ci ratio: 1.431969e-01	ci left: 4.762750e-04	ci right 5.503873e-04	k: 748	n:1460000
KRTAP5-5   1460000 perm   1042 sec   (1401 perm/sec)   p_kst 5.123288e-04   p_cons 4.931507e-05   p_joint 9.178082e-05

Joint ci ratio: 3.361216e-01	ci left: 7.699966e-05	ci right 1.086990e-04	k: 135	n:1470000
Cons ci ratio: 4.556791e-01	ci left: 3.892560e-05	ci right 6.243942e-05	k: 73	n:1470000
KS ci ratio: 1.423440e-01	ci left: 4.789388e-04	ci right 5.529841e-04	k: 757	n:1470000
KRTAP5-5   1470000 perm   1054 sec   (1394 perm/sec)   p_kst 5.149660e-04   p_cons 4.965986e-05   p_joint 9.183673e-05

Joint ci ratio: 3.361217e-01	ci left: 7.647939e-05	ci right 1.079645e-04	k: 135	n:1480000
Cons ci ratio: 4.556792e-01	ci left: 3.866259e-05	ci right 6.201754e-05	k: 73	n:1480000
KS ci ratio: 1.420633e-01	ci left: 4.776576e-04	ci right 5.513469e-04	k: 760	n:1480000
KRTAP5-5   1480000 perm   1067 sec   (1387 perm/sec)   p_kst 5.135135e-04   p_cons 4.932432e-05   p_joint 9.121622e-05

Joint ci ratio: 3.324744e-01	ci left: 7.781056e-05	ci right 1.094217e-04	k: 138	n:1490000
Cons ci ratio: 4.526311e-01	ci left: 3.899745e-05	ci right 6.234875e-05	k: 74	n:1490000
KS ci ratio: 1.410473e-01	ci left: 4.815730e-04	ci right 5.552903e-04	k: 771	n:1490000
KRTAP5-5   1490000 perm   1080 sec   (1380 perm/sec)   p_kst 5.174497e-04   p_cons 4.966443e-05   p_joint 9.261745e-05

Joint ci ratio: 3.312849e-01	ci left: 7.790294e-05	ci right 1.094143e-04	k: 139	n:1500000
Cons ci ratio: 4.526311e-01	ci left: 3.873747e-05	ci right 6.193309e-05	k: 74	n:1500000
KS ci ratio: 1.406833e-01	ci left: 4.809352e-04	ci right 5.543490e-04	k: 775	n:1500000
KRTAP5-5   1500000 perm   1093 sec   (1373 perm/sec)   p_kst 5.166667e-04   p_cons 4.933333e-05   p_joint 9.266667e-05

Joint ci ratio: 3.301080e-01	ci left: 7.799430e-05	ci right 1.094067e-04	k: 140	n:1510000
Cons ci ratio: 4.526312e-01	ci left: 3.848093e-05	ci right 6.152294e-05	k: 74	n:1510000
KS ci ratio: 1.401426e-01	ci left: 4.815841e-04	ci right 5.547908e-04	k: 781	n:1510000
KRTAP5-5   1510000 perm   1106 sec   (1366 perm/sec)   p_kst 5.172185e-04   p_cons 4.900662e-05   p_joint 9.271523e-05

Joint ci ratio: 3.301081e-01	ci left: 7.748118e-05	ci right 1.086869e-04	k: 140	n:1520000
Cons ci ratio: 4.526313e-01	ci left: 3.822776e-05	ci right 6.111819e-05	k: 74	n:1520000
KS ci ratio: 1.394310e-01	ci left: 4.834949e-04	ci right 5.565879e-04	k: 789	n:1520000
KRTAP5-5   1520000 perm   1119 sec   (1358 perm/sec)   p_kst 5.190789e-04   p_cons 4.868421e-05   p_joint 9.210526e-05

Joint ci ratio: 3.289437e-01	ci left: 7.757430e-05	ci right 1.086840e-04	k: 141	n:1530000
Cons ci ratio: 4.526314e-01	ci left: 3.797791e-05	ci right 6.071873e-05	k: 74	n:1530000
KS ci ratio: 1.387303e-01	ci left: 4.853817e-04	ci right 5.583607e-04	k: 797	n:1530000
KRTAP5-5   1530000 perm   1132 sec   (1351 perm/sec)   p_kst 5.209150e-04   p_cons 4.836601e-05   p_joint 9.215686e-05

Joint ci ratio: 3.277915e-01	ci left: 7.766639e-05	ci right 1.086810e-04	k: 142	n:1540000
Cons ci ratio: 4.496436e-01	ci left: 3.830685e-05	ci right 6.104712e-05	k: 75	n:1540000
KS ci ratio: 1.382116e-01	ci left: 4.859910e-04	ci right 5.587659e-04	k: 803	n:1540000
KRTAP5-5   1540000 perm   1146 sec   (1344 perm/sec)   p_kst 5.214286e-04   p_cons 4.870130e-05   p_joint 9.220779e-05

Joint ci ratio: 3.266514e-01	ci left: 7.775749e-05	ci right 1.086778e-04	k: 143	n:1550000
Cons ci ratio: 4.496437e-01	ci left: 3.805971e-05	ci right 6.065327e-05	k: 75	n:1550000
KS ci ratio: 1.380402e-01	ci left: 4.841013e-04	ci right 5.564959e-04	k: 805	n:1550000
KRTAP5-5   1550000 perm   1159 sec   (1337 perm/sec)   p_kst 5.193548e-04   p_cons 4.838710e-05   p_joint 9.225806e-05

Joint ci ratio: 3.255230e-01	ci left: 7.784760e-05	ci right 1.086744e-04	k: 144	n:1560000
Cons ci ratio: 4.496437e-01	ci left: 3.781573e-05	ci right 6.026447e-05	k: 75	n:1560000
KS ci ratio: 1.376140e-01	ci left: 4.840927e-04	ci right 5.562442e-04	k: 810	n:1560000
KRTAP5-5   1560000 perm   1172 sec   (1331 perm/sec)   p_kst 5.192308e-04   p_cons 4.807692e-05   p_joint 9.230769e-05

Joint ci ratio: 3.222067e-01	ci left: 7.910727e-05	ci right 1.100479e-04	k: 147	n:1570000
Cons ci ratio: 4.438414e-01	ci left: 3.870541e-05	ci right 6.129694e-05	k: 77	n:1570000
KS ci ratio: 1.371077e-01	ci left: 4.846996e-04	ci right 5.566541e-04	k: 816	n:1570000
KRTAP5-5   1570000 perm   1186 sec   (1324 perm/sec)   p_kst 5.197452e-04   p_cons 4.904459e-05   p_joint 9.363057e-05

Joint ci ratio: 3.211237e-01	ci left: 7.918841e-05	ci right 1.100352e-04	k: 148	n:1580000
Cons ci ratio: 4.410233e-01	ci left: 3.902282e-05	ci right 6.161198e-05	k: 78	n:1580000
KS ci ratio: 1.366070e-01	ci left: 4.852994e-04	ci right 5.570584e-04	k: 822	n:1580000
KRTAP5-5   1580000 perm   1199 sec   (1318 perm/sec)   p_kst 5.202532e-04   p_cons 4.936709e-05   p_joint 9.367089e-05

Joint ci ratio: 3.189898e-01	ci left: 7.984720e-05	ci right 1.107017e-04	k: 150	n:1590000
Cons ci ratio: 4.382582e-01	ci left: 3.933670e-05	ci right 6.192262e-05	k: 79	n:1590000
KS ci ratio: 1.361117e-01	ci left: 4.858920e-04	ci right 5.574571e-04	k: 828	n:1590000
KRTAP5-5   1590000 perm   1212 sec   (1312 perm/sec)   p_kst 5.207547e-04   p_cons 4.968553e-05   p_joint 9.433962e-05

Joint ci ratio: 3.179388e-01	ci left: 7.992320e-05	ci right 1.106846e-04	k: 151	n:1600000
Cons ci ratio: 4.382582e-01	ci left: 3.909084e-05	ci right 6.153561e-05	k: 79	n:1600000
KS ci ratio: 1.358662e-01	ci left: 4.846664e-04	ci right 5.559118e-04	k: 831	n:1600000
KRTAP5-5   1600000 perm   1226 sec   (1305 perm/sec)   p_kst 5.193750e-04   p_cons 4.937500e-05   p_joint 9.437500e-05

Joint ci ratio: 3.168981e-01	ci left: 7.999842e-05	ci right 1.106676e-04	k: 152	n:1610000
Cons ci ratio: 4.382583e-01	ci left: 3.884804e-05	ci right 6.115340e-05	k: 79	n:1610000
KS ci ratio: 1.354598e-01	ci left: 4.846562e-04	ci right 5.556698e-04	k: 836	n:1610000
KRTAP5-5   1610000 perm   1239 sec   (1299 perm/sec)   p_kst 5.192547e-04   p_cons 4.906832e-05   p_joint 9.440994e-05

Joint ci ratio: 3.158675e-01	ci left: 8.007288e-05	ci right 1.106506e-04	k: 153	n:1620000
Cons ci ratio: 4.382584e-01	ci left: 3.860824e-05	ci right 6.077591e-05	k: 79	n:1620000
KS ci ratio: 1.352177e-01	ci left: 4.834537e-04	ci right 5.541543e-04	k: 839	n:1620000
KRTAP5-5   1620000 perm   1253 sec   (1293 perm/sec)   p_kst 5.179012e-04   p_cons 4.876543e-05   p_joint 9.444444e-05

Joint ci ratio: 3.148469e-01	ci left: 8.014658e-05	ci right 1.106336e-04	k: 154	n:1630000
Cons ci ratio: 4.355446e-01	ci left: 3.891738e-05	ci right 6.108364e-05	k: 80	n:1630000
KS ci ratio: 1.348171e-01	ci left: 4.834516e-04	ci right 5.539256e-04	k: 844	n:1630000
KRTAP5-5   1630000 perm   1267 sec   (1286 perm/sec)   p_kst 5.177914e-04   p_cons 4.907975e-05   p_joint 9.447853e-05

Joint ci ratio: 3.148470e-01	ci left: 7.965788e-05	ci right 1.099590e-04	k: 154	n:1640000
Cons ci ratio: 4.355447e-01	ci left: 3.868008e-05	ci right 6.071118e-05	k: 80	n:1640000
KS ci ratio: 1.344992e-01	ci left: 4.828605e-04	ci right 5.530692e-04	k: 848	n:1640000
KRTAP5-5   1640000 perm   1281 sec   (1280 perm/sec)   p_kst 5.170732e-04   p_cons 4.878049e-05   p_joint 9.390244e-05

Joint ci ratio: 3.138362e-01	ci left: 7.973336e-05	ci right 1.099463e-04	k: 155	n:1650000
Cons ci ratio: 4.355447e-01	ci left: 3.844565e-05	ci right 6.034323e-05	k: 80	n:1650000
KS ci ratio: 1.338698e-01	ci left: 4.846199e-04	ci right 5.547284e-04	k: 856	n:1650000
KRTAP5-5   1650000 perm   1295 sec   (1274 perm/sec)   p_kst 5.187879e-04   p_cons 4.848485e-05   p_joint 9.393939e-05

Joint ci ratio: 3.128352e-01	ci left: 7.980809e-05	ci right 1.099336e-04	k: 156	n:1660000
Cons ci ratio: 4.355448e-01	ci left: 3.821405e-05	ci right 5.997972e-05	k: 80	n:1660000
KS ci ratio: 1.334036e-01	ci left: 4.851941e-04	ci right 5.551219e-04	k: 862	n:1660000
KRTAP5-5   1660000 perm   1309 sec   (1268 perm/sec)   p_kst 5.192771e-04   p_cons 4.819277e-05   p_joint 9.397590e-05

Joint ci ratio: 3.108613e-01	ci left: 8.043409e-05	ci right 1.105664e-04	k: 158	n:1670000
Cons ci ratio: 4.355449e-01	ci left: 3.798522e-05	ci right 5.962056e-05	k: 80	n:1670000
KS ci ratio: 1.327132e-01	ci left: 4.874986e-04	ci right 5.573662e-04	k: 871	n:1670000
KRTAP5-5   1670000 perm   1323 sec   (1262 perm/sec)   p_kst 5.215569e-04   p_cons 4.790419e-05   p_joint 9.461078e-05

Joint ci ratio: 3.098884e-01	ci left: 8.050420e-05	ci right 1.105497e-04	k: 159	n:1680000
Cons ci ratio: 4.355449e-01	ci left: 3.775912e-05	ci right 5.926568e-05	k: 80	n:1680000
KS ci ratio: 1.325614e-01	ci left: 4.857478e-04	ci right 5.552786e-04	k: 873	n:1680000
KRTAP5-5   1680000 perm   1338 sec   (1256 perm/sec)   p_kst 5.196429e-04   p_cons 4.761905e-05   p_joint 9.464286e-05

Joint ci ratio: 3.098884e-01	ci left: 8.002784e-05	ci right 1.098956e-04	k: 159	n:1690000
Cons ci ratio: 4.355450e-01	ci left: 3.753569e-05	ci right 5.891500e-05	k: 80	n:1690000
KS ci ratio: 1.315120e-01	ci left: 4.908840e-04	ci right 5.605503e-04	k: 887	n:1690000
KRTAP5-5   1690000 perm   1352 sec   (1250 perm/sec)   p_kst 5.248521e-04   p_cons 4.733728e-05   p_joint 9.408284e-05

Joint ci ratio: 3.098885e-01	ci left: 7.955708e-05	ci right 1.092491e-04	k: 159	n:1700000
Cons ci ratio: 4.355451e-01	ci left: 3.731489e-05	ci right 5.856844e-05	k: 80	n:1700000
KS ci ratio: 1.312168e-01	ci left: 4.902721e-04	ci right 5.596832e-04	k: 891	n:1700000
KRTAP5-5   1700000 perm   1367 sec   (1244 perm/sec)   p_kst 5.241176e-04   p_cons 4.705882e-05   p_joint 9.352941e-05

Joint ci ratio: 3.098886e-01	ci left: 7.909184e-05	ci right 1.086102e-04	k: 159	n:1710000
Cons ci ratio: 4.355451e-01	ci left: 3.709667e-05	ci right 5.822594e-05	k: 80	n:1710000
KS ci ratio: 1.309968e-01	ci left: 4.891018e-04	ci right 5.582221e-04	k: 894	n:1710000
KRTAP5-5   1710000 perm   1381 sec   (1238 perm/sec)   p_kst 5.228070e-04   p_cons 4.678363e-05   p_joint 9.298246e-05

Joint ci ratio: 3.070235e-01	ci left: 8.024121e-05	ci right 1.098575e-04	k: 162	n:1720000
Cons ci ratio: 4.302654e-01	ci left: 3.791705e-05	ci right 5.917618e-05	k: 82	n:1720000
KS ci ratio: 1.302709e-01	ci left: 4.918822e-04	ci right 5.609804e-04	k: 904	n:1720000
KRTAP5-5   1720000 perm   1396 sec   (1232 perm/sec)   p_kst 5.255814e-04   p_cons 4.767442e-05   p_joint 9.418605e-05

Joint ci ratio: 3.060860e-01	ci left: 8.031096e-05	ci right 1.098449e-04	k: 163	n:1730000
Cons ci ratio: 4.276966e-01	ci left: 3.821349e-05	ci right 5.947422e-05	k: 83	n:1730000
KS ci ratio: 1.299840e-01	ci left: 4.912758e-04	ci right 5.601251e-04	k: 908	n:1730000
KRTAP5-5   1730000 perm   1410 sec   (1227 perm/sec)   p_kst 5.248555e-04   p_cons 4.797688e-05   p_joint 9.421965e-05

Joint ci ratio: 3.060861e-01	ci left: 7.984940e-05	ci right 1.092136e-04	k: 163	n:1740000
Cons ci ratio: 4.276966e-01	ci left: 3.799387e-05	ci right 5.913241e-05	k: 83	n:1740000
KS ci ratio: 1.297701e-01	ci left: 4.901205e-04	ci right 5.586862e-04	k: 911	n:1740000
KRTAP5-5   1740000 perm   1425 sec   (1221 perm/sec)   p_kst 5.235632e-04   p_cons 4.770115e-05   p_joint 9.367816e-05

Joint ci ratio: 3.051571e-01	ci left: 7.992074e-05	ci right 1.092046e-04	k: 164	n:1750000
Cons ci ratio: 4.276967e-01	ci left: 3.777676e-05	ci right 5.879452e-05	k: 83	n:1750000
KS ci ratio: 1.289943e-01	ci left: 4.934021e-04	ci right 5.619827e-04	k: 922	n:1750000
KRTAP5-5   1750000 perm   1439 sec   (1216 perm/sec)   p_kst 5.268571e-04   p_cons 4.742857e-05   p_joint 9.371429e-05

Joint ci ratio: 3.051572e-01	ci left: 7.946664e-05	ci right 1.085841e-04	k: 164	n:1760000
Cons ci ratio: 4.276967e-01	ci left: 3.756212e-05	ci right 5.846046e-05	k: 83	n:1760000
KS ci ratio: 1.289246e-01	ci left: 4.911485e-04	ci right 5.593761e-04	k: 923	n:1760000
KRTAP5-5   1760000 perm   1454 sec   (1210 perm/sec)   p_kst 5.244318e-04   p_cons 4.715909e-05   p_joint 9.318182e-05

Joint ci ratio: 3.042367e-01	ci left: 7.953946e-05	ci right 1.085787e-04	k: 165	n:1770000
Cons ci ratio: 4.251734e-01	ci left: 3.785423e-05	ci right 5.875544e-05	k: 84	n:1770000
KS ci ratio: 1.281638e-01	ci left: 4.943886e-04	ci right 5.626302e-04	k: 934	n:1770000
KRTAP5-5   1770000 perm   1469 sec   (1205 perm/sec)   p_kst 5.276836e-04   p_cons 4.745763e-05   p_joint 9.322034e-05

Joint ci ratio: 3.033244e-01	ci left: 7.961159e-05	ci right 1.085732e-04	k: 166	n:1780000
Cons ci ratio: 4.226941e-01	ci left: 3.814342e-05	ci right 5.904675e-05	k: 85	n:1780000
KS ci ratio: 1.279588e-01	ci left: 4.932425e-04	ci right 5.612087e-04	k: 937	n:1780000
KRTAP5-5   1780000 perm   1484 sec   (1200 perm/sec)   p_kst 5.264045e-04   p_cons 4.775281e-05   p_joint 9.325843e-05

Joint ci ratio: 3.015241e-01	ci left: 8.019939e-05	ci right 1.091685e-04	k: 168	n:1790000
Cons ci ratio: 4.226942e-01	ci left: 3.793033e-05	ci right 5.871689e-05	k: 85	n:1790000
KS ci ratio: 1.276191e-01	ci left: 4.931909e-04	ci right 5.609560e-04	k: 942	n:1790000
KRTAP5-5   1790000 perm   1499 sec   (1194 perm/sec)   p_kst 5.262570e-04   p_cons 4.748603e-05   p_joint 9.385475e-05

Joint ci ratio: 3.006360e-01	ci left: 8.026743e-05	ci right 1.091594e-04	k: 169	n:1800000
Cons ci ratio: 4.202578e-01	ci left: 3.821623e-05	ci right 5.900484e-05	k: 86	n:1800000
KS ci ratio: 1.272821e-01	ci left: 4.931402e-04	ci right 5.607059e-04	k: 947	n:1800000
KRTAP5-5   1800000 perm   1514 sec   (1189 perm/sec)   p_kst 5.261111e-04   p_cons 4.777778e-05   p_joint 9.388889e-05

Joint ci ratio: 2.997556e-01	ci left: 8.033484e-05	ci right 1.091503e-04	k: 170	n:1810000
Cons ci ratio: 4.202579e-01	ci left: 3.800509e-05	ci right 5.867884e-05	k: 86	n:1810000
KS ci ratio: 1.270145e-01	ci left: 4.925553e-04	ci right 5.598883e-04	k: 951	n:1810000
KRTAP5-5   1810000 perm   1530 sec   (1183 perm/sec)   p_kst 5.254144e-04   p_cons 4.751381e-05   p_joint 9.392265e-05

Joint ci ratio: 2.980178e-01	ci left: 8.090996e-05	ci right 1.097316e-04	k: 172	n:1820000
Cons ci ratio: 4.178632e-01	ci left: 3.828777e-05	ci right 5.896351e-05	k: 87	n:1820000
KS ci ratio: 1.266822e-01	ci left: 4.925090e-04	ci right 5.596463e-04	k: 956	n:1820000
KRTAP5-5   1820000 perm   1545 sec   (1178 perm/sec)   p_kst 5.252747e-04   p_cons 4.780220e-05   p_joint 9.450549e-05

Joint ci ratio: 2.980179e-01	ci left: 8.046783e-05	ci right 1.091320e-04	k: 172	n:1830000
Cons ci ratio: 4.178632e-01	ci left: 3.807855e-05	ci right 5.864130e-05	k: 87	n:1830000
KS ci ratio: 1.264842e-01	ci left: 4.914052e-04	ci right 5.582794e-04	k: 959	n:1830000
KRTAP5-5   1830000 perm   1560 sec   (1173 perm/sec)   p_kst 5.240437e-04   p_cons 4.754098e-05   p_joint 9.398907e-05

Joint ci ratio: 2.971603e-01	ci left: 8.053341e-05	ci right 1.091228e-04	k: 173	n:1840000
Cons ci ratio: 4.155090e-01	ci left: 3.835809e-05	ci right 5.892275e-05	k: 88	n:1840000
KS ci ratio: 1.264186e-01	ci left: 4.892607e-04	ci right 5.558060e-04	k: 960	n:1840000
KRTAP5-5   1840000 perm   1575 sec   (1168 perm/sec)   p_kst 5.217391e-04   p_cons 4.782609e-05   p_joint 9.402174e-05

Joint ci ratio: 2.963101e-01	ci left: 8.059840e-05	ci right 1.091136e-04	k: 174	n:1850000
Cons ci ratio: 4.131941e-01	ci left: 3.863493e-05	ci right 5.920084e-05	k: 89	n:1850000
KS ci ratio: 1.261563e-01	ci left: 4.887099e-04	ci right 5.550321e-04	k: 964	n:1850000
KRTAP5-5   1850000 perm   1591 sec   (1163 perm/sec)   p_kst 5.210811e-04   p_cons 4.810811e-05   p_joint 9.405405e-05

Joint ci ratio: 2.963101e-01	ci left: 8.016507e-05	ci right 1.085270e-04	k: 174	n:1860000
Cons ci ratio: 4.131942e-01	ci left: 3.842722e-05	ci right 5.888256e-05	k: 89	n:1860000
KS ci ratio: 1.257659e-01	ci left: 4.892066e-04	ci right 5.553754e-04	k: 970	n:1860000
KRTAP5-5   1860000 perm   1606 sec   (1158 perm/sec)   p_kst 5.215054e-04   p_cons 4.784946e-05   p_joint 9.354839e-05

Joint ci ratio: 2.954671e-01	ci left: 8.023146e-05	ci right 1.085209e-04	k: 175	n:1870000
Cons ci ratio: 4.131942e-01	ci left: 3.822172e-05	ci right 5.856768e-05	k: 89	n:1870000
KS ci ratio: 1.256367e-01	ci left: 4.876264e-04	ci right 5.535086e-04	k: 972	n:1870000
KRTAP5-5   1870000 perm   1622 sec   (1153 perm/sec)   p_kst 5.197861e-04   p_cons 4.759358e-05   p_joint 9.358289e-05

Joint ci ratio: 2.946313e-01	ci left: 8.029724e-05	ci right 1.085149e-04	k: 176	n:1880000
Cons ci ratio: 4.109176e-01	ci left: 3.849519e-05	ci right 5.884291e-05	k: 90	n:1880000
KS ci ratio: 1.253793e-01	ci left: 4.870935e-04	ci right 5.527589e-04	k: 976	n:1880000
KRTAP5-5   1880000 perm   1637 sec   (1148 perm/sec)   p_kst 5.191489e-04   p_cons 4.787234e-05   p_joint 9.361702e-05

Joint ci ratio: 2.938025e-01	ci left: 8.036245e-05	ci right 1.085088e-04	k: 177	n:1890000
Cons ci ratio: 4.109177e-01	ci left: 3.829151e-05	ci right 5.853157e-05	k: 90	n:1890000
KS ci ratio: 1.251234e-01	ci left: 4.865664e-04	ci right 5.520169e-04	k: 980	n:1890000
KRTAP5-5   1890000 perm   1653 sec   (1143 perm/sec)   p_kst 5.185185e-04   p_cons 4.761905e-05   p_joint 9.365079e-05

Joint ci ratio: 2.929807e-01	ci left: 8.042707e-05	ci right 1.085026e-04	k: 178	n:1900000
Cons ci ratio: 4.109177e-01	ci left: 3.808997e-05	ci right 5.822352e-05	k: 90	n:1900000
KS ci ratio: 1.248058e-01	ci left: 4.865548e-04	ci right 5.518254e-04	k: 985	n:1900000
KRTAP5-5   1900000 perm   1669 sec   (1138 perm/sec)   p_kst 5.184211e-04   p_cons 4.736842e-05   p_joint 9.368421e-05

Joint ci ratio: 2.921657e-01	ci left: 8.049113e-05	ci right 1.084964e-04	k: 179	n:1910000
Cons ci ratio: 4.086783e-01	ci left: 3.836013e-05	ci right 5.849593e-05	k: 91	n:1910000
KS ci ratio: 1.244906e-01	ci left: 4.865436e-04	ci right 5.516356e-04	k: 990	n:1910000
KRTAP5-5   1910000 perm   1685 sec   (1134 perm/sec)   p_kst 5.183246e-04   p_cons 4.764398e-05   p_joint 9.371728e-05

Joint ci ratio: 2.921658e-01	ci left: 8.007190e-05	ci right 1.079313e-04	k: 179	n:1920000
Cons ci ratio: 4.086784e-01	ci left: 3.816033e-05	ci right 5.819127e-05	k: 91	n:1920000
KS ci ratio: 1.239910e-01	ci left: 4.880467e-04	ci right 5.530586e-04	k: 998	n:1920000
KRTAP5-5   1920000 perm   1701 sec   (1129 perm/sec)   p_kst 5.197917e-04   p_cons 4.739583e-05   p_joint 9.322917e-05

Joint ci ratio: 2.905560e-01	ci left: 8.061757e-05	ci right 1.084839e-04	k: 181	n:1930000
Cons ci ratio: 4.086784e-01	ci left: 3.796261e-05	ci right 5.788976e-05	k: 91	n:1930000
KS ci ratio: 1.236819e-01	ci left: 4.880284e-04	ci right 5.528639e-04	k: 1003	n:1930000
KRTAP5-5   1930000 perm   1717 sec   (1124 perm/sec)   p_kst 5.196891e-04   p_cons 4.715026e-05   p_joint 9.378238e-05

Joint ci ratio: 2.889725e-01	ci left: 8.115803e-05	ci right 1.090303e-04	k: 183	n:1940000
Cons ci ratio: 4.064752e-01	ci left: 3.822954e-05	ci right 5.815940e-05	k: 92	n:1940000
KS ci ratio: 1.234363e-01	ci left: 4.875109e-04	ci right 5.521396e-04	k: 1007	n:1940000
KRTAP5-5   1940000 perm   1734 sec   (1119 perm/sec)   p_kst 5.190722e-04   p_cons 4.742268e-05   p_joint 9.432990e-05

Joint ci ratio: 2.881904e-01	ci left: 8.121754e-05	ci right 1.090210e-04	k: 184	n:1950000
Cons ci ratio: 4.064753e-01	ci left: 3.803349e-05	ci right 5.786114e-05	k: 92	n:1950000
KS ci ratio: 1.228888e-01	ci left: 4.894841e-04	ci right 5.540656e-04	k: 1016	n:1950000
KRTAP5-5   1950000 perm   1749 sec   (1115 perm/sec)   p_kst 5.210256e-04   p_cons 4.717949e-05   p_joint 9.435897e-05

Joint ci ratio: 2.874146e-01	ci left: 8.127654e-05	ci right 1.090117e-04	k: 185	n:1960000
Cons ci ratio: 4.064753e-01	ci left: 3.783944e-05	ci right 5.756594e-05	k: 92	n:1960000
KS ci ratio: 1.225878e-01	ci left: 4.894594e-04	ci right 5.538681e-04	k: 1021	n:1960000
KRTAP5-5   1960000 perm   1765 sec   (1111 perm/sec)   p_kst 5.209184e-04   p_cons 4.693878e-05   p_joint 9.438776e-05

Joint ci ratio: 2.858817e-01	ci left: 8.180622e-05	ci right 1.095464e-04	k: 187	n:1970000
Cons ci ratio: 4.043074e-01	ci left: 3.810321e-05	ci right 5.783283e-05	k: 93	n:1970000
KS ci ratio: 1.223486e-01	ci left: 4.889431e-04	ci right 5.531492e-04	k: 1025	n:1970000
KRTAP5-5   1970000 perm   1781 sec   (1106 perm/sec)   p_kst 5.203046e-04   p_cons 4.720812e-05   p_joint 9.492386e-05

Joint ci ratio: 2.851244e-01	ci left: 8.186195e-05	ci right 1.095342e-04	k: 188	n:1980000
Cons ci ratio: 4.021738e-01	ci left: 3.836459e-05	ci right 5.809676e-05	k: 94	n:1980000
KS ci ratio: 1.221109e-01	ci left: 4.884321e-04	ci right 5.524374e-04	k: 1029	n:1980000
KRTAP5-5   1980000 perm   1797 sec   (1102 perm/sec)   p_kst 5.196970e-04   p_cons 4.747475e-05   p_joint 9.494949e-05

Joint ci ratio: 2.851244e-01	ci left: 8.145058e-05	ci right 1.089838e-04	k: 188	n:1990000
Cons ci ratio: 4.021738e-01	ci left: 3.817181e-05	ci right 5.780482e-05	k: 94	n:1990000
KS ci ratio: 1.215222e-01	ci left: 4.908497e-04	ci right 5.548395e-04	k: 1039	n:1990000
KRTAP5-5   1990000 perm   1814 sec   (1097 perm/sec)   p_kst 5.221106e-04   p_cons 4.723618e-05   p_joint 9.447236e-05

Joint ci ratio: 2.851245e-01	ci left: 8.104333e-05	ci right 1.084389e-04	k: 188	n:2000000
Cons ci ratio: 4.021739e-01	ci left: 3.798095e-05	ci right 5.751579e-05	k: 94	n:2000000
KS ci ratio: 1.209997e-01	ci left: 4.927590e-04	ci right 5.567017e-04	k: 1048	n:2000000
KRTAP5-5   2000000 perm   1830 sec   (1093 perm/sec)   p_kst 5.240000e-04   p_cons 4.700000e-05   p_joint 9.400000e-05

Joint ci ratio: 2.851246e-01	ci left: 8.064012e-05	ci right 1.078994e-04	k: 188	n:2010000
Cons ci ratio: 4.021739e-01	ci left: 3.779199e-05	ci right 5.722965e-05	k: 94	n:2010000
KS ci ratio: 1.207697e-01	ci left: 4.922373e-04	ci right 5.559823e-04	k: 1052	n:2010000
KRTAP5-5   2010000 perm   1846 sec   (1089 perm/sec)   p_kst 5.233831e-04   p_cons 4.676617e-05   p_joint 9.353234e-05

Joint ci ratio: 2.843732e-01	ci left: 8.070062e-05	ci right 1.078955e-04	k: 189	n:2020000
Cons ci ratio: 4.021740e-01	ci left: 3.760490e-05	ci right 5.694633e-05	k: 94	n:2020000
KS ci ratio: 1.203702e-01	ci left: 4.931613e-04	ci right 5.567997e-04	k: 1059	n:2020000
KRTAP5-5   2020000 perm   1863 sec   (1084 perm/sec)   p_kst 5.242574e-04   p_cons 4.653465e-05   p_joint 9.356436e-05

Joint ci ratio: 2.843733e-01	ci left: 8.030307e-05	ci right 1.073640e-04	k: 189	n:2030000
Cons ci ratio: 4.021740e-01	ci left: 3.741965e-05	ci right 5.666581e-05	k: 94	n:2030000
KS ci ratio: 1.202569e-01	ci left: 4.916875e-04	ci right 5.550717e-04	k: 1061	n:2030000
KRTAP5-5   2030000 perm   1879 sec   (1080 perm/sec)   p_kst 5.226601e-04   p_cons 4.630542e-05   p_joint 9.310345e-05

Joint ci ratio: 2.836279e-01	ci left: 8.036472e-05	ci right 1.073628e-04	k: 190	n:2040000
Cons ci ratio: 4.000738e-01	ci left: 3.767696e-05	ci right 5.692744e-05	k: 95	n:2040000
KS ci ratio: 1.199186e-01	ci left: 4.921301e-04	ci right 5.553802e-04	k: 1067	n:2040000
KRTAP5-5   2040000 perm   1896 sec   (1076 perm/sec)   p_kst 5.230392e-04   p_cons 4.656863e-05   p_joint 9.313725e-05

Joint ci ratio: 2.828883e-01	ci left: 8.042585e-05	ci right 1.073614e-04	k: 191	n:2050000
Cons ci ratio: 3.980062e-01	ci left: 3.793202e-05	ci right 5.718626e-05	k: 96	n:2050000
KS ci ratio: 1.197506e-01	ci left: 4.911490e-04	ci right 5.541783e-04	k: 1070	n:2050000
KRTAP5-5   2050000 perm   1912 sec   (1072 perm/sec)   p_kst 5.219512e-04   p_cons 4.682927e-05   p_joint 9.317073e-05

Joint ci ratio: 2.807037e-01	ci left: 8.138885e-05	ci right 1.083992e-04	k: 194	n:2060000
Cons ci ratio: 3.959703e-01	ci left: 3.818485e-05	ci right 5.744231e-05	k: 97	n:2060000
KS ci ratio: 1.195277e-01	ci left: 4.906484e-04	ci right 5.534880e-04	k: 1074	n:2060000
KRTAP5-5   2060000 perm   1929 sec   (1068 perm/sec)   p_kst 5.213592e-04   p_cons 4.708738e-05   p_joint 9.417476e-05

Joint ci ratio: 2.807037e-01	ci left: 8.099566e-05	ci right 1.078755e-04	k: 194	n:2070000
Cons ci ratio: 3.959703e-01	ci left: 3.800038e-05	ci right 5.716481e-05	k: 97	n:2070000
KS ci ratio: 1.193613e-01	ci left: 4.896841e-04	ci right 5.523067e-04	k: 1077	n:2070000
KRTAP5-5   2070000 perm   1946 sec   (1064 perm/sec)   p_kst 5.202899e-04   p_cons 4.685990e-05   p_joint 9.371981e-05

Joint ci ratio: 2.799867e-01	ci left: 8.105323e-05	ci right 1.078714e-04	k: 195	n:2080000
Cons ci ratio: 3.959704e-01	ci left: 3.781769e-05	ci right 5.688998e-05	k: 97	n:2080000
KS ci ratio: 1.190305e-01	ci left: 4.901285e-04	ci right 5.526220e-04	k: 1083	n:2080000
KRTAP5-5   2080000 perm   1962 sec   (1060 perm/sec)   p_kst 5.206731e-04   p_cons 4.663462e-05   p_joint 9.375000e-05

Joint ci ratio: 2.785690e-01	ci left: 8.155535e-05	ci right 1.083790e-04	k: 197	n:2090000
Cons ci ratio: 3.919905e-01	ci left: 3.849888e-05	ci right 5.766906e-05	k: 99	n:2090000
KS ci ratio: 1.187024e-01	ci left: 4.905688e-04	ci right 5.529339e-04	k: 1089	n:2090000
KRTAP5-5   2090000 perm   1979 sec   (1056 perm/sec)   p_kst 5.210526e-04   p_cons 4.736842e-05   p_joint 9.425837e-05

Joint ci ratio: 2.778682e-01	ci left: 8.160996e-05	ci right 1.083722e-04	k: 198	n:2100000
Cons ci ratio: 3.900451e-01	ci left: 3.874492e-05	ci right 5.791722e-05	k: 100	n:2100000
KS ci ratio: 1.183770e-01	ci left: 4.910052e-04	ci right 5.532427e-04	k: 1095	n:2100000
KRTAP5-5   2100000 perm   1996 sec   (1052 perm/sec)   p_kst 5.214286e-04   p_cons 4.761905e-05   p_joint 9.428571e-05

Joint ci ratio: 2.771727e-01	ci left: 8.166414e-05	ci right 1.083655e-04	k: 199	n:2110000
Cons ci ratio: 3.900452e-01	ci left: 3.856129e-05	ci right 5.764273e-05	k: 100	n:2110000
KS ci ratio: 1.182692e-01	ci left: 4.895980e-04	ci right 5.515967e-04	k: 1097	n:2110000
KRTAP5-5   2110000 perm   2013 sec   (1048 perm/sec)   p_kst 5.199052e-04   p_cons 4.739336e-05   p_joint 9.431280e-05

Joint ci ratio: 2.764823e-01	ci left: 8.171789e-05	ci right 1.083587e-04	k: 200	n:2120000
Cons ci ratio: 3.881284e-01	ci left: 3.880495e-05	ci right 5.788846e-05	k: 101	n:2120000
KS ci ratio: 1.177342e-01	ci left: 4.918663e-04	ci right 5.538509e-04	k: 1107	n:2120000
KRTAP5-5   2120000 perm   2031 sec   (1044 perm/sec)   p_kst 5.221698e-04   p_cons 4.764151e-05   p_joint 9.433962e-05

Joint ci ratio: 2.757971e-01	ci left: 8.177122e-05	ci right 1.083518e-04	k: 201	n:2130000
Cons ci ratio: 3.881285e-01	ci left: 3.862277e-05	ci right 5.761668e-05	k: 101	n:2130000
KS ci ratio: 1.174694e-01	ci left: 4.918355e-04	ci right 5.536671e-04	k: 1112	n:2130000
KRTAP5-5   2130000 perm   2048 sec   (1040 perm/sec)   p_kst 5.220657e-04   p_cons 4.741784e-05   p_joint 9.436620e-05

Joint ci ratio: 2.757972e-01	ci left: 8.138911e-05	ci right 1.078455e-04	k: 201	n:2140000
Cons ci ratio: 3.881285e-01	ci left: 3.844229e-05	ci right 5.734745e-05	k: 101	n:2140000
KS ci ratio: 1.174696e-01	ci left: 4.895372e-04	ci right 5.510799e-04	k: 1112	n:2140000
KRTAP5-5   2140000 perm   2065 sec   (1036 perm/sec)   p_kst 5.196262e-04   p_cons 4.719626e-05   p_joint 9.392523e-05

Joint ci ratio: 2.757972e-01	ci left: 8.101055e-05	ci right 1.073439e-04	k: 201	n:2150000
Cons ci ratio: 3.881285e-01	ci left: 3.826349e-05	ci right 5.708071e-05	k: 101	n:2150000
KS ci ratio: 1.172591e-01	ci left: 4.890661e-04	ci right 5.504318e-04	k: 1116	n:2150000
KRTAP5-5   2150000 perm   2082 sec   (1032 perm/sec)   p_kst 5.190698e-04   p_cons 4.697674e-05   p_joint 9.348837e-05

Joint ci ratio: 2.757973e-01	ci left: 8.063550e-05	ci right 1.068470e-04	k: 201	n:2160000
Cons ci ratio: 3.881286e-01	ci left: 3.808634e-05	ci right 5.681645e-05	k: 101	n:2160000
KS ci ratio: 1.169454e-01	ci left: 4.894983e-04	ci right 5.507426e-04	k: 1122	n:2160000
KRTAP5-5   2160000 perm   2100 sec   (1029 perm/sec)   p_kst 5.194444e-04   p_cons 4.675926e-05   p_joint 9.305556e-05

Joint ci ratio: 2.757973e-01	ci left: 8.026391e-05	ci right 1.063546e-04	k: 201	n:2170000
Cons ci ratio: 3.881286e-01	ci left: 3.791083e-05	ci right 5.655463e-05	k: 101	n:2170000
KS ci ratio: 1.166342e-01	ci left: 4.899268e-04	ci right 5.510503e-04	k: 1128	n:2170000
KRTAP5-5   2170000 perm   2117 sec   (1025 perm/sec)   p_kst 5.198157e-04   p_cons 4.654378e-05   p_joint 9.262673e-05

Joint ci ratio: 2.757974e-01	ci left: 7.989572e-05	ci right 1.058667e-04	k: 201	n:2180000
Cons ci ratio: 3.881287e-01	ci left: 3.773692e-05	ci right 5.629520e-05	k: 101	n:2180000
KS ci ratio: 1.164282e-01	ci left: 4.894608e-04	ci right 5.504109e-04	k: 1132	n:2180000
KRTAP5-5   2180000 perm   2134 sec   (1021 perm/sec)   p_kst 5.192661e-04   p_cons 4.633028e-05   p_joint 9.220183e-05

Joint ci ratio: 2.757975e-01	ci left: 7.953090e-05	ci right 1.053833e-04	k: 201	n:2190000
Cons ci ratio: 3.881287e-01	ci left: 3.756461e-05	ci right 5.603815e-05	k: 101	n:2190000
KS ci ratio: 1.163256e-01	ci left: 4.881124e-04	ci right 5.488375e-04	k: 1134	n:2190000
KRTAP5-5   2190000 perm   2152 sec   (1018 perm/sec)   p_kst 5.178082e-04   p_cons 4.611872e-05   p_joint 9.178082e-05

Joint ci ratio: 2.751173e-01	ci left: 7.959255e-05	ci right 1.053902e-04	k: 202	n:2200000
Cons ci ratio: 3.862399e-01	ci left: 3.780416e-05	ci right 5.628201e-05	k: 102	n:2200000
KS ci ratio: 1.160703e-01	ci left: 4.881004e-04	ci right 5.486815e-04	k: 1139	n:2200000
KRTAP5-5   2200000 perm   2170 sec   (1014 perm/sec)   p_kst 5.177273e-04   p_cons 4.636364e-05   p_joint 9.181818e-05

Joint ci ratio: 2.751174e-01	ci left: 7.923240e-05	ci right 1.049133e-04	k: 202	n:2210000
Cons ci ratio: 3.862400e-01	ci left: 3.763310e-05	ci right 5.602734e-05	k: 102	n:2210000
KS ci ratio: 1.157155e-01	ci left: 4.889674e-04	ci right 5.494580e-04	k: 1146	n:2210000
KRTAP5-5   2210000 perm   2188 sec   (1010 perm/sec)   p_kst 5.185520e-04   p_cons 4.615385e-05   p_joint 9.140271e-05

Joint ci ratio: 2.744422e-01	ci left: 7.929492e-05	ci right 1.049221e-04	k: 203	n:2220000
Cons ci ratio: 3.843785e-01	ci left: 3.787040e-05	ci right 5.626885e-05	k: 103	n:2220000
KS ci ratio: 1.155143e-01	ci left: 4.885146e-04	ci right 5.488368e-04	k: 1150	n:2220000
KRTAP5-5   2220000 perm   2206 sec   (1007 perm/sec)   p_kst 5.180180e-04   p_cons 4.639640e-05   p_joint 9.144144e-05

Joint ci ratio: 2.737720e-01	ci left: 7.935695e-05	ci right 1.049308e-04	k: 204	n:2230000
Cons ci ratio: 3.843786e-01	ci left: 3.770057e-05	ci right 5.601652e-05	k: 103	n:2230000
KS ci ratio: 1.152642e-01	ci left: 4.885013e-04	ci right 5.486825e-04	k: 1155	n:2230000
KRTAP5-5   2230000 perm   2223 sec   (1003 perm/sec)   p_kst 5.179372e-04   p_cons 4.618834e-05   p_joint 9.147982e-05

Joint ci ratio: 2.717904e-01	ci left: 8.025038e-05	ci right 1.058930e-04	k: 207	n:2240000
Cons ci ratio: 3.789516e-01	ci left: 3.874307e-05	ci right 5.723362e-05	k: 106	n:2240000
KS ci ratio: 1.148674e-01	ci left: 4.897892e-04	ci right 5.499072e-04	k: 1163	n:2240000
KRTAP5-5   2240000 perm   2241 sec   (999 perm/sec)   p_kst 5.191964e-04   p_cons 4.732143e-05   p_joint 9.241071e-05

Joint ci ratio: 2.717905e-01	ci left: 7.989371e-05	ci right 1.054224e-04	k: 207	n:2250000
Cons ci ratio: 3.789516e-01	ci left: 3.857087e-05	ci right 5.697925e-05	k: 106	n:2250000
KS ci ratio: 1.146705e-01	ci left: 4.893391e-04	ci right 5.492920e-04	k: 1167	n:2250000
KRTAP5-5   2250000 perm   2259 sec   (996 perm/sec)   p_kst 5.186667e-04   p_cons 4.711111e-05   p_joint 9.200000e-05

Joint ci ratio: 2.704931e-01	ci left: 8.036500e-05	ci right 1.059009e-04	k: 209	n:2260000
Cons ci ratio: 3.754588e-01	ci left: 3.920126e-05	ci right 5.769560e-05	k: 108	n:2260000
KS ci ratio: 1.144259e-01	ci left: 4.893229e-04	ci right 5.491372e-04	k: 1172	n:2260000
KRTAP5-5   2260000 perm   2277 sec   (992 perm/sec)   p_kst 5.185841e-04   p_cons 4.778761e-05   p_joint 9.247788e-05

Joint ci ratio: 2.698513e-01	ci left: 8.042166e-05	ci right 1.059046e-04	k: 210	n:2270000
Cons ci ratio: 3.754588e-01	ci left: 3.902857e-05	ci right 5.744144e-05	k: 108	n:2270000
KS ci ratio: 1.139893e-01	ci left: 4.910188e-04	ci right 5.507960e-04	k: 1181	n:2270000
KRTAP5-5   2270000 perm   2296 sec   (989 perm/sec)   p_kst 5.202643e-04   p_cons 4.757709e-05   p_joint 9.251101e-05

Joint ci ratio: 2.685814e-01	ci left: 8.088693e-05	ci right 1.063764e-04	k: 212	n:2280000
Cons ci ratio: 3.737482e-01	ci left: 3.925470e-05	ci right 5.766921e-05	k: 109	n:2280000
KS ci ratio: 1.136054e-01	ci left: 4.922741e-04	ci right 5.519888e-04	k: 1189	n:2280000
KRTAP5-5   2280000 perm   2314 sec   (985 perm/sec)   p_kst 5.214912e-04   p_cons 4.780702e-05   p_joint 9.298246e-05

Joint ci ratio: 2.673292e-01	ci left: 8.134841e-05	ci right 1.068438e-04	k: 214	n:2290000
Cons ci ratio: 3.720608e-01	ci left: 3.947903e-05	ci right 5.789480e-05	k: 110	n:2290000
KS ci ratio: 1.132254e-01	ci left: 4.935188e-04	ci right 5.531709e-04	k: 1197	n:2290000
KRTAP5-5   2290000 perm   2333 sec   (982 perm/sec)   p_kst 5.227074e-04   p_cons 4.803493e-05   p_joint 9.344978e-05

Joint ci ratio: 2.673292e-01	ci left: 8.099472e-05	ci right 1.063792e-04	k: 214	n:2300000
Cons ci ratio: 3.720609e-01	ci left: 3.930739e-05	ci right 5.764309e-05	k: 110	n:2300000
KS ci ratio: 1.130369e-01	ci left: 4.930630e-04	ci right 5.525541e-04	k: 1201	n:2300000
KRTAP5-5   2300000 perm   2352 sec   (978 perm/sec)   p_kst 5.221739e-04   p_cons 4.782609e-05   p_joint 9.304348e-05

Joint ci ratio: 2.673293e-01	ci left: 8.064409e-05	ci right 1.059187e-04	k: 214	n:2310000
Cons ci ratio: 3.720609e-01	ci left: 3.913722e-05	ci right 5.739355e-05	k: 110	n:2310000
KS ci ratio: 1.129431e-01	ci left: 4.917698e-04	ci right 5.510524e-04	k: 1203	n:2310000
KRTAP5-5   2310000 perm   2371 sec   (974 perm/sec)   p_kst 5.207792e-04   p_cons 4.761905e-05   p_joint 9.264069e-05

Joint ci ratio: 2.673293e-01	ci left: 8.029649e-05	ci right 1.054622e-04	k: 214	n:2320000
Cons ci ratio: 3.720610e-01	ci left: 3.896853e-05	ci right 5.714616e-05	k: 110	n:2320000
KS ci ratio: 1.127093e-01	ci left: 4.917445e-04	ci right 5.508932e-04	k: 1208	n:2320000
KRTAP5-5   2320000 perm   2390 sec   (971 perm/sec)   p_kst 5.206897e-04   p_cons 4.741379e-05   p_joint 9.224138e-05

Joint ci ratio: 2.673294e-01	ci left: 7.995186e-05	ci right 1.050095e-04	k: 214	n:2330000
Cons ci ratio: 3.720610e-01	ci left: 3.880128e-05	ci right 5.690090e-05	k: 110	n:2330000
KS ci ratio: 1.123843e-01	ci left: 4.925537e-04	ci right 5.516176e-04	k: 1215	n:2330000
KRTAP5-5   2330000 perm   2408 sec   (967 perm/sec)   p_kst 5.214592e-04   p_cons 4.721030e-05   p_joint 9.184549e-05

Joint ci ratio: 2.660945e-01	ci left: 8.040775e-05	ci right 1.054725e-04	k: 216	n:2340000
Cons ci ratio: 3.703962e-01	ci left: 3.902295e-05	ci right 5.712478e-05	k: 111	n:2340000
KS ci ratio: 1.119707e-01	ci left: 4.941871e-04	ci right 5.532143e-04	k: 1224	n:2340000
KRTAP5-5   2340000 perm   2427 sec   (964 perm/sec)   p_kst 5.230769e-04   p_cons 4.743590e-05   p_joint 9.230769e-05

Joint ci ratio: 2.660946e-01	ci left: 8.006559e-05	ci right 1.050237e-04	k: 216	n:2350000
Cons ci ratio: 3.703963e-01	ci left: 3.885689e-05	ci right 5.688170e-05	k: 111	n:2350000
KS ci ratio: 1.117428e-01	ci left: 4.941523e-04	ci right 5.530473e-04	k: 1229	n:2350000
KRTAP5-5   2350000 perm   2446 sec   (961 perm/sec)   p_kst 5.229787e-04   p_cons 4.723404e-05   p_joint 9.191489e-05

Joint ci ratio: 2.660946e-01	ci left: 7.972632e-05	ci right 1.045787e-04	k: 216	n:2360000
Cons ci ratio: 3.703963e-01	ci left: 3.869224e-05	ci right 5.664067e-05	k: 111	n:2360000
KS ci ratio: 1.114262e-01	ci left: 4.949417e-04	ci right 5.537528e-04	k: 1236	n:2360000
KRTAP5-5   2360000 perm   2465 sec   (957 perm/sec)   p_kst 5.237288e-04   p_cons 4.703390e-05   p_joint 9.152542e-05

Joint ci ratio: 2.654836e-01	ci left: 7.978376e-05	ci right 1.045874e-04	k: 217	n:2370000
Cons ci ratio: 3.703964e-01	ci left: 3.852898e-05	ci right 5.640168e-05	k: 111	n:2370000
KS ci ratio: 1.112017e-01	ci left: 4.949043e-04	ci right 5.535847e-04	k: 1241	n:2370000
KRTAP5-5   2370000 perm   2484 sec   (954 perm/sec)   p_kst 5.236287e-04   p_cons 4.683544e-05   p_joint 9.156118e-05

Joint ci ratio: 2.648768e-01	ci left: 7.984077e-05	ci right 1.045960e-04	k: 218	n:2380000
Cons ci ratio: 3.687537e-01	ci left: 3.874824e-05	ci right 5.662372e-05	k: 112	n:2380000
KS ci ratio: 1.109340e-01	ci left: 4.952759e-04	ci right 5.538497e-04	k: 1247	n:2380000
KRTAP5-5   2380000 perm   2504 sec   (951 perm/sec)   p_kst 5.239496e-04   p_cons 4.705882e-05   p_joint 9.159664e-05

Joint ci ratio: 2.642741e-01	ci left: 7.989737e-05	ci right 1.046044e-04	k: 219	n:2390000
Cons ci ratio: 3.671328e-01	ci left: 3.896584e-05	ci right 5.684373e-05	k: 113	n:2390000
KS ci ratio: 1.107125e-01	ci left: 4.952377e-04	ci right 5.536823e-04	k: 1252	n:2390000
KRTAP5-5   2390000 perm   2523 sec   (947 perm/sec)   p_kst 5.238494e-04   p_cons 4.728033e-05   p_joint 9.163180e-05

Joint ci ratio: 2.619037e-01	ci left: 8.112123e-05	ci right 1.059449e-04	k: 223	n:2400000
Cons ci ratio: 3.608563e-01	ci left: 4.031774e-05	ci right 5.842531e-05	k: 117	n:2400000
KS ci ratio: 1.103169e-01	ci left: 4.968206e-04	ci right 5.552289e-04	k: 1261	n:2400000
KRTAP5-5   2400000 perm   2543 sec   (944 perm/sec)   p_kst 5.254167e-04   p_cons 4.875000e-05   p_joint 9.291667e-05

Joint ci ratio: 2.619038e-01	ci left: 8.078463e-05	ci right 1.055053e-04	k: 223	n:2410000
Cons ci ratio: 3.608563e-01	ci left: 4.015045e-05	ci right 5.818289e-05	k: 117	n:2410000
KS ci ratio: 1.100990e-01	ci left: 4.967766e-04	ci right 5.550569e-04	k: 1266	n:2410000
KRTAP5-5   2410000 perm   2563 sec   (940 perm/sec)   p_kst 5.253112e-04   p_cons 4.854772e-05   p_joint 9.253112e-05

Joint ci ratio: 2.607423e-01	ci left: 8.122312e-05	ci right 1.059498e-04	k: 225	n:2420000
Cons ci ratio: 3.608564e-01	ci left: 3.998453e-05	ci right 5.794246e-05	k: 117	n:2420000
KS ci ratio: 1.098824e-01	ci left: 4.967330e-04	ci right 5.548862e-04	k: 1271	n:2420000
KRTAP5-5   2420000 perm   2583 sec   (937 perm/sec)   p_kst 5.252066e-04   p_cons 4.834711e-05   p_joint 9.297521e-05

Joint ci ratio: 2.601673e-01	ci left: 8.127353e-05	ci right 1.059521e-04	k: 226	n:2430000
Cons ci ratio: 3.608564e-01	ci left: 3.981999e-05	ci right 5.770402e-05	k: 117	n:2430000
KS ci ratio: 1.096242e-01	ci left: 4.970902e-04	ci right 5.551396e-04	k: 1277	n:2430000
KRTAP5-5   2430000 perm   2603 sec   (934 perm/sec)   p_kst 5.255144e-04   p_cons 4.814815e-05   p_joint 9.300412e-05

Joint ci ratio: 2.601674e-01	ci left: 8.094044e-05	ci right 1.055179e-04	k: 226	n:2440000
Cons ci ratio: 3.608565e-01	ci left: 3.965679e-05	ci right 5.746753e-05	k: 117	n:2440000
KS ci ratio: 1.093251e-01	ci left: 4.978433e-04	ci right 5.558118e-04	k: 1284	n:2440000
KRTAP5-5   2440000 perm   2623 sec   (930 perm/sec)   p_kst 5.262295e-04   p_cons 4.795082e-05   p_joint 9.262295e-05

Joint ci ratio: 2.595962e-01	ci left: 8.099165e-05	ci right 1.055219e-04	k: 227	n:2450000
Cons ci ratio: 3.608565e-01	ci left: 3.949493e-05	ci right 5.723297e-05	k: 117	n:2450000
KS ci ratio: 1.091131e-01	ci left: 4.977963e-04	ci right 5.556398e-04	k: 1289	n:2450000
KRTAP5-5   2450000 perm   2643 sec   (927 perm/sec)   p_kst 5.261224e-04   p_cons 4.775510e-05   p_joint 9.265306e-05

Joint ci ratio: 2.595963e-01	ci left: 8.066241e-05	ci right 1.050929e-04	k: 227	n:2460000
Cons ci ratio: 3.608565e-01	ci left: 3.933438e-05	ci right 5.700031e-05	k: 117	n:2460000
KS ci ratio: 1.088182e-01	ci left: 4.985408e-04	ci right 5.563041e-04	k: 1296	n:2460000
KRTAP5-5   2460000 perm   2663 sec   (924 perm/sec)   p_kst 5.268293e-04   p_cons 4.756098e-05   p_joint 9.227642e-05

Joint ci ratio: 2.584651e-01	ci left: 8.109299e-05	ci right 1.055296e-04	k: 229	n:2470000
Cons ci ratio: 3.593371e-01	ci left: 3.954336e-05	ci right 5.721087e-05	k: 118	n:2470000
KS ci ratio: 1.085257e-01	ci left: 4.992794e-04	ci right 5.569628e-04	k: 1303	n:2470000
KRTAP5-5   2470000 perm   2683 sec   (921 perm/sec)   p_kst 5.275304e-04   p_cons 4.777328e-05   p_joint 9.271255e-05

Joint ci ratio: 2.584651e-01	ci left: 8.076600e-05	ci right 1.051041e-04	k: 229	n:2480000
Cons ci ratio: 3.593371e-01	ci left: 3.938391e-05	ci right 5.698019e-05	k: 118	n:2480000
KS ci ratio: 1.082768e-01	ci left: 4.996199e-04	ci right 5.572019e-04	k: 1309	n:2480000
KRTAP5-5   2480000 perm   2703 sec   (917 perm/sec)   p_kst 5.278226e-04   p_cons 4.758065e-05   p_joint 9.233871e-05

Joint ci ratio: 2.584652e-01	ci left: 8.044164e-05	ci right 1.046820e-04	k: 229	n:2490000
Cons ci ratio: 3.593372e-01	ci left: 3.922574e-05	ci right 5.675135e-05	k: 118	n:2490000
KS ci ratio: 1.080297e-01	ci left: 4.999579e-04	ci right 5.574390e-04	k: 1315	n:2490000
KRTAP5-5   2490000 perm   2724 sec   (914 perm/sec)   p_kst 5.281124e-04   p_cons 4.738956e-05   p_joint 9.196787e-05

Joint ci ratio: 2.579051e-01	ci left: 8.049399e-05	ci right 1.046891e-04	k: 230	n:2500000
Cons ci ratio: 3.593372e-01	ci left: 3.906884e-05	ci right 5.652435e-05	k: 118	n:2500000
KS ci ratio: 1.079068e-01	ci left: 4.991256e-04	ci right 5.564416e-04	k: 1318	n:2500000
KRTAP5-5   2500000 perm   2744 sec   (911 perm/sec)   p_kst 5.272000e-04   p_cons 4.720000e-05   p_joint 9.200000e-05

Joint ci ratio: 2.562464e-01	ci left: 8.129151e-05	ci right 1.055441e-04	k: 233	n:2510000
Cons ci ratio: 3.578368e-01	ci left: 3.927570e-05	ci right 5.673330e-05	k: 119	n:2510000
KS ci ratio: 1.076622e-01	ci left: 4.994631e-04	ci right 5.566796e-04	k: 1324	n:2510000
KRTAP5-5   2510000 perm   2765 sec   (908 perm/sec)   p_kst 5.274900e-04   p_cons 4.741036e-05   p_joint 9.282869e-05

Joint ci ratio: 2.551583e-01	ci left: 8.171172e-05	ci right 1.059697e-04	k: 235	n:2520000
Cons ci ratio: 3.548915e-01	ci left: 3.984245e-05	ci right 5.737257e-05	k: 121	n:2520000
KS ci ratio: 1.075001e-01	ci left: 4.990257e-04	ci right 5.561005e-04	k: 1328	n:2520000
KRTAP5-5   2520000 perm   2786 sec   (905 perm/sec)   p_kst 5.269841e-04   p_cons 4.801587e-05   p_joint 9.325397e-05

Joint ci ratio: 2.551583e-01	ci left: 8.138875e-05	ci right 1.055508e-04	k: 235	n:2530000
Cons ci ratio: 3.548915e-01	ci left: 3.968497e-05	ci right 5.714580e-05	k: 121	n:2530000
KS ci ratio: 1.073790e-01	ci left: 4.982071e-04	ci right 5.551201e-04	k: 1331	n:2530000
KRTAP5-5   2530000 perm   2806 sec   (902 perm/sec)   p_kst 5.260870e-04   p_cons 4.782609e-05   p_joint 9.288538e-05

Joint ci ratio: 2.551584e-01	ci left: 8.106832e-05	ci right 1.051352e-04	k: 235	n:2540000
Cons ci ratio: 3.548915e-01	ci left: 3.952873e-05	ci right 5.692082e-05	k: 121	n:2540000
KS ci ratio: 1.072986e-01	ci left: 4.970119e-04	ci right 5.537432e-04	k: 1333	n:2540000
KRTAP5-5   2540000 perm   2827 sec   (898 perm/sec)   p_kst 5.248031e-04   p_cons 4.763780e-05   p_joint 9.251969e-05

Joint ci ratio: 2.546195e-01	ci left: 8.111751e-05	ci right 1.051401e-04	k: 236	n:2550000
Cons ci ratio: 3.534459e-01	ci left: 3.973099e-05	ci right 5.712451e-05	k: 122	n:2550000
KS ci ratio: 1.070981e-01	ci left: 4.969711e-04	ci right 5.535850e-04	k: 1338	n:2550000
KRTAP5-5   2550000 perm   2848 sec   (895 perm/sec)   p_kst 5.247059e-04   p_cons 4.784314e-05   p_joint 9.254902e-05

Joint ci ratio: 2.546195e-01	ci left: 8.080064e-05	ci right 1.047294e-04	k: 236	n:2560000
Cons ci ratio: 3.534459e-01	ci left: 3.957579e-05	ci right 5.690137e-05	k: 122	n:2560000
KS ci ratio: 1.068987e-01	ci left: 4.969306e-04	ci right 5.534279e-04	k: 1343	n:2560000
KRTAP5-5   2560000 perm   2869 sec   (892 perm/sec)   p_kst 5.246094e-04   p_cons 4.765625e-05   p_joint 9.218750e-05

Joint ci ratio: 2.546196e-01	ci left: 8.048624e-05	ci right 1.043219e-04	k: 236	n:2570000
Cons ci ratio: 3.534460e-01	ci left: 3.942180e-05	ci right 5.667996e-05	k: 122	n:2570000
KS ci ratio: 1.065425e-01	ci left: 4.984055e-04	ci right 5.548699e-04	k: 1352	n:2570000
KRTAP5-5   2570000 perm   2890 sec   (889 perm/sec)   p_kst 5.260700e-04   p_cons 4.747082e-05   p_joint 9.182879e-05

Joint ci ratio: 2.540841e-01	ci left: 8.053717e-05	ci right 1.043298e-04	k: 237	n:2580000
Cons ci ratio: 3.520179e-01	ci left: 3.962225e-05	ci right 5.688207e-05	k: 123	n:2580000
KS ci ratio: 1.062679e-01	ci left: 4.991147e-04	ci right 5.555045e-04	k: 1359	n:2580000
KRTAP5-5   2580000 perm   2911 sec   (886 perm/sec)   p_kst 5.267442e-04   p_cons 4.767442e-05   p_joint 9.186047e-05

Joint ci ratio: 2.540841e-01	ci left: 8.022621e-05	ci right 1.039270e-04	k: 237	n:2590000
Cons ci ratio: 3.520179e-01	ci left: 3.946927e-05	ci right 5.666245e-05	k: 123	n:2590000
KS ci ratio: 1.060731e-01	ci left: 4.990669e-04	ci right 5.553415e-04	k: 1364	n:2590000
KRTAP5-5   2590000 perm   2932 sec   (883 perm/sec)   p_kst 5.266409e-04   p_cons 4.749035e-05   p_joint 9.150579e-05

Joint ci ratio: 2.535520e-01	ci left: 8.027780e-05	ci right 1.039363e-04	k: 238	n:2600000
Cons ci ratio: 3.506070e-01	ci left: 3.966815e-05	ci right 5.686294e-05	k: 124	n:2600000
KS ci ratio: 1.059568e-01	ci left: 4.982706e-04	ci right 5.543900e-04	k: 1367	n:2600000
KRTAP5-5   2600000 perm   2953 sec   (880 perm/sec)   p_kst 5.257692e-04   p_cons 4.769231e-05   p_joint 9.153846e-05

Joint ci ratio: 2.535521e-01	ci left: 7.997022e-05	ci right 1.035381e-04	k: 238	n:2610000
Cons ci ratio: 3.506070e-01	ci left: 3.951616e-05	ci right 5.664507e-05	k: 124	n:2610000
KS ci ratio: 1.056482e-01	ci left: 4.993456e-04	ci right 5.554121e-04	k: 1375	n:2610000
KRTAP5-5   2610000 perm   2975 sec   (877 perm/sec)   p_kst 5.268199e-04   p_cons 4.750958e-05   p_joint 9.118774e-05

Joint ci ratio: 2.530233e-01	ci left: 8.002245e-05	ci right 1.035488e-04	k: 239	n:2620000
Cons ci ratio: 3.506070e-01	ci left: 3.936533e-05	ci right 5.642887e-05	k: 124	n:2620000
KS ci ratio: 1.054950e-01	ci left: 4.989261e-04	ci right 5.548592e-04	k: 1379	n:2620000
KRTAP5-5   2620000 perm   2996 sec   (875 perm/sec)   p_kst 5.263359e-04   p_cons 4.732824e-05   p_joint 9.122137e-05

Joint ci ratio: 2.524978e-01	ci left: 8.007432e-05	ci right 1.035593e-04	k: 240	n:2630000
Cons ci ratio: 3.492129e-01	ci left: 3.956247e-05	ci right 5.662782e-05	k: 125	n:2630000
KS ci ratio: 1.052285e-01	ci left: 4.996205e-04	ci right 5.554812e-04	k: 1386	n:2630000
KRTAP5-5   2630000 perm   3018 sec   (872 perm/sec)   p_kst 5.269962e-04   p_cons 4.752852e-05   p_joint 9.125475e-05

Joint ci ratio: 2.514565e-01	ci left: 8.048075e-05	ci right 1.039723e-04	k: 242	n:2640000
Cons ci ratio: 3.478353e-01	ci left: 3.975824e-05	ci right 5.682514e-05	k: 126	n:2640000
KS ci ratio: 1.048511e-01	ci left: 5.014164e-04	ci right 5.572644e-04	k: 1396	n:2640000
KRTAP5-5   2640000 perm   3039 sec   (869 perm/sec)   p_kst 5.287879e-04   p_cons 4.772727e-05   p_joint 9.166667e-05

Joint ci ratio: 1.576671e-01	ci left: 2.148206e-04	ci right 2.519463e-04	k: 617	n:2650000
Cons ci ratio: 3.464739e-01	ci left: 3.995267e-05	ci right 5.702084e-05	k: 127	n:2650000
KS ci ratio: 1.047013e-01	ci left: 5.009941e-04	ci right 5.567105e-04	k: 1400	n:2650000
KRTAP5-5   2650000 perm   3061 sec   (866 perm/sec)   p_kst 5.283019e-04   p_cons 4.792453e-05   p_joint 2.328302e-04

Joint ci ratio: 2.509407e-01	ci left: 8.022790e-05	ci right 1.035902e-04	k: 243	n:2660000
Cons ci ratio: 3.464739e-01	ci left: 3.980247e-05	ci right 5.680647e-05	k: 127	n:2660000
KS ci ratio: 1.045150e-01	ci left: 5.009412e-04	ci right 5.565465e-04	k: 1405	n:2660000
KRTAP5-5   2660000 perm   3083 sec   (863 perm/sec)   p_kst 5.281955e-04   p_cons 4.774436e-05   p_joint 9.135338e-05

Joint ci ratio: 2.499185e-01	ci left: 8.062948e-05	ci right 1.039981e-04	k: 245	n:2670000
Cons ci ratio: 3.464740e-01	ci left: 3.965340e-05	ci right 5.659372e-05	k: 127	n:2670000
KS ci ratio: 1.042927e-01	ci left: 5.012535e-04	ci right 5.567679e-04	k: 1411	n:2670000
KRTAP5-5   2670000 perm   3104 sec   (860 perm/sec)   p_kst 5.284644e-04   p_cons 4.756554e-05   p_joint 9.176030e-05

Joint ci ratio: 2.499186e-01	ci left: 8.032863e-05	ci right 1.036101e-04	k: 245	n:2680000
Cons ci ratio: 3.464740e-01	ci left: 3.950544e-05	ci right 5.638255e-05	k: 127	n:2680000
KS ci ratio: 1.041453e-01	ci left: 5.008368e-04	ci right 5.562218e-04	k: 1415	n:2680000
KRTAP5-5   2680000 perm   3126 sec   (857 perm/sec)   p_kst 5.279851e-04   p_cons 4.738806e-05   p_joint 9.141791e-05

Joint ci ratio: 2.499186e-01	ci left: 8.003000e-05	ci right 1.032249e-04	k: 245	n:2690000
Cons ci ratio: 3.464740e-01	ci left: 3.935858e-05	ci right 5.617295e-05	k: 127	n:2690000
KS ci ratio: 1.039619e-01	ci left: 5.007853e-04	ci right 5.560612e-04	k: 1420	n:2690000
KRTAP5-5   2690000 perm   3148 sec   (855 perm/sec)   p_kst 5.278810e-04   p_cons 4.721190e-05   p_joint 9.107807e-05

Joint ci ratio: 2.489088e-01	ci left: 8.042804e-05	ci right 1.036296e-04	k: 247	n:2700000
Cons ci ratio: 3.464740e-01	ci left: 3.921280e-05	ci right 5.596490e-05	k: 127	n:2700000
KS ci ratio: 1.037431e-01	ci left: 5.010951e-04	ci right 5.562816e-04	k: 1426	n:2700000
KRTAP5-5   2700000 perm   3170 sec   (852 perm/sec)   p_kst 5.281481e-04   p_cons 4.703704e-05   p_joint 9.148148e-05

Joint ci ratio: 2.479111e-01	ci left: 8.082333e-05	ci right 1.040310e-04	k: 249	n:2710000
Cons ci ratio: 3.451285e-01	ci left: 3.940507e-05	ci right 5.615931e-05	k: 128	n:2710000
KS ci ratio: 1.035980e-01	ci left: 5.006838e-04	ci right 5.557432e-04	k: 1430	n:2710000
KRTAP5-5   2710000 perm   3192 sec   (849 perm/sec)   p_kst 5.276753e-04   p_cons 4.723247e-05   p_joint 9.188192e-05

Joint ci ratio: 2.479111e-01	ci left: 8.052619e-05	ci right 1.036486e-04	k: 249	n:2720000
Cons ci ratio: 3.451285e-01	ci left: 3.926020e-05	ci right 5.595285e-05	k: 128	n:2720000
KS ci ratio: 1.034175e-01	ci left: 5.006337e-04	ci right 5.555858e-04	k: 1435	n:2720000
KRTAP5-5   2720000 perm   3214 sec   (846 perm/sec)   p_kst 5.275735e-04   p_cons 4.705882e-05   p_joint 9.154412e-05

Joint ci ratio: 2.479112e-01	ci left: 8.023122e-05	ci right 1.032689e-04	k: 249	n:2730000
Cons ci ratio: 3.451285e-01	ci left: 3.911638e-05	ci right 5.574789e-05	k: 128	n:2730000
KS ci ratio: 1.033456e-01	ci left: 4.995135e-04	ci right 5.543023e-04	k: 1437	n:2730000
KRTAP5-5   2730000 perm   3237 sec   (843 perm/sec)   p_kst 5.263736e-04   p_cons 4.688645e-05   p_joint 9.120879e-05

Joint ci ratio: 2.474168e-01	ci left: 8.028072e-05	ci right 1.032796e-04	k: 250	n:2740000
Cons ci ratio: 3.451286e-01	ci left: 3.897362e-05	ci right 5.554443e-05	k: 128	n:2740000
KS ci ratio: 1.032022e-01	ci left: 4.991126e-04	ci right 5.537768e-04	k: 1441	n:2740000
KRTAP5-5   2740000 perm   3259 sec   (841 perm/sec)   p_kst 5.259124e-04   p_cons 4.671533e-05   p_joint 9.124088e-05

Joint ci ratio: 2.474169e-01	ci left: 7.998878e-05	ci right 1.029040e-04	k: 250	n:2750000
Cons ci ratio: 3.451286e-01	ci left: 3.883190e-05	ci right 5.534245e-05	k: 128	n:2750000
KS ci ratio: 1.031665e-01	ci left: 4.976519e-04	ci right 5.521361e-04	k: 1442	n:2750000
KRTAP5-5   2750000 perm   3281 sec   (838 perm/sec)   p_kst 5.243636e-04   p_cons 4.654545e-05   p_joint 9.090909e-05

Joint ci ratio: 2.474169e-01	ci left: 7.969897e-05	ci right 1.025312e-04	k: 250	n:2760000
Cons ci ratio: 3.451286e-01	ci left: 3.869120e-05	ci right 5.514194e-05	k: 128	n:2760000
KS ci ratio: 1.029172e-01	ci left: 4.983197e-04	ci right 5.527372e-04	k: 1449	n:2760000
KRTAP5-5   2760000 perm   3303 sec   (835 perm/sec)   p_kst 5.250000e-04   p_cons 4.637681e-05   p_joint 9.057971e-05

Joint ci ratio: 2.469255e-01	ci left: 7.974990e-05	ci right 1.025443e-04	k: 251	n:2770000
Cons ci ratio: 3.451287e-01	ci left: 3.855152e-05	ci right 5.494287e-05	k: 128	n:2770000
KS ci ratio: 1.027755e-01	ci left: 4.979276e-04	ci right 5.522229e-04	k: 1453	n:2770000
KRTAP5-5   2770000 perm   3326 sec   (833 perm/sec)   p_kst 5.245487e-04   p_cons 4.620939e-05   p_joint 9.061372e-05

Joint ci ratio: 2.469256e-01	ci left: 7.946303e-05	ci right 1.021755e-04	k: 251	n:2780000
Cons ci ratio: 3.451287e-01	ci left: 3.841285e-05	ci right 5.474524e-05	k: 128	n:2780000
KS ci ratio: 1.027403e-01	ci left: 4.964869e-04	ci right 5.506055e-04	k: 1454	n:2780000
KRTAP5-5   2780000 perm   3349 sec   (830 perm/sec)   p_kst 5.230216e-04   p_cons 4.604317e-05   p_joint 9.028777e-05

Joint ci ratio: 2.464371e-01	ci left: 7.951448e-05	ci right 1.021898e-04	k: 252	n:2790000
Cons ci ratio: 3.437987e-01	ci left: 3.860259e-05	ci right 5.493833e-05	k: 129	n:2790000
KS ci ratio: 1.026346e-01	ci left: 4.957550e-04	ci right 5.497349e-04	k: 1457	n:2790000
KRTAP5-5   2790000 perm   3371 sec   (828 perm/sec)   p_kst 5.222222e-04   p_cons 4.623656e-05   p_joint 9.032258e-05

Joint ci ratio: 2.459515e-01	ci left: 7.956561e-05	ci right 1.022040e-04	k: 253	n:2800000
Cons ci ratio: 3.437987e-01	ci left: 3.846472e-05	ci right 5.474212e-05	k: 129	n:2800000
KS ci ratio: 1.024591e-01	ci left: 4.957244e-04	ci right 5.496030e-04	k: 1462	n:2800000
KRTAP5-5   2800000 perm   3394 sec   (825 perm/sec)   p_kst 5.221429e-04   p_cons 4.607143e-05   p_joint 9.035714e-05

Joint ci ratio: 2.454687e-01	ci left: 7.961642e-05	ci right 1.022180e-04	k: 254	n:2810000
Cons ci ratio: 3.424839e-01	ci left: 3.865304e-05	ci right 5.493373e-05	k: 130	n:2810000
KS ci ratio: 1.022496e-01	ci left: 4.960408e-04	ci right 5.498370e-04	k: 1468	n:2810000
KRTAP5-5   2810000 perm   3417 sec   (822 perm/sec)   p_kst 5.224199e-04   p_cons 4.626335e-05   p_joint 9.039146e-05

Joint ci ratio: 2.449888e-01	ci left: 7.966691e-05	ci right 1.022319e-04	k: 255	n:2820000
Cons ci ratio: 3.424840e-01	ci left: 3.851598e-05	ci right 5.473893e-05	k: 130	n:2820000
KS ci ratio: 1.021454e-01	ci left: 4.953184e-04	ci right 5.489783e-04	k: 1471	n:2820000
KRTAP5-5   2820000 perm   3439 sec   (820 perm/sec)   p_kst 5.216312e-04   p_cons 4.609929e-05   p_joint 9.042553e-05

Joint ci ratio: 2.449889e-01	ci left: 7.938540e-05	ci right 1.018706e-04	k: 255	n:2830000
Cons ci ratio: 3.424840e-01	ci left: 3.837988e-05	ci right 5.454550e-05	k: 130	n:2830000
KS ci ratio: 1.021108e-01	ci left: 4.939125e-04	ci right 5.474008e-04	k: 1472	n:2830000
KRTAP5-5   2830000 perm   3462 sec   (817 perm/sec)   p_kst 5.201413e-04   p_cons 4.593640e-05   p_joint 9.010601e-05

Joint ci ratio: 1.957416e-01	ci left: 1.273798e-04	ci right 1.553463e-04	k: 400	n:2840000
Cons ci ratio: 3.398991e-01	ci left: 3.888863e-05	ci right 5.511778e-05	k: 132	n:2840000
KS ci ratio: 1.018346e-01	ci left: 4.949185e-04	ci right 5.483620e-04	k: 1480	n:2840000
KRTAP5-5   2840000 perm   3485 sec   (815 perm/sec)   p_kst 5.211268e-04   p_cons 4.647887e-05   p_joint 1.408451e-04

Joint ci ratio: 1.957417e-01	ci left: 1.269329e-04	ci right 1.548012e-04	k: 400	n:2850000
Cons ci ratio: 3.398991e-01	ci left: 3.875218e-05	ci right 5.492438e-05	k: 132	n:2850000
KS ci ratio: 1.018003e-01	ci left: 4.935238e-04	ci right 5.467978e-04	k: 1481	n:2850000
KRTAP5-5   2850000 perm   3508 sec   (812 perm/sec)   p_kst 5.196491e-04   p_cons 4.631579e-05   p_joint 1.403509e-04

Joint ci ratio: 1.954981e-01	ci left: 1.268216e-04	ci right 1.546267e-04	k: 401	n:2860000
Cons ci ratio: 3.398991e-01	ci left: 3.861668e-05	ci right 5.473234e-05	k: 132	n:2860000
KS ci ratio: 1.016974e-01	ci left: 4.928205e-04	ci right 5.459616e-04	k: 1484	n:2860000
KRTAP5-5   2860000 perm   3531 sec   (810 perm/sec)   p_kst 5.188811e-04   p_cons 4.615385e-05   p_joint 1.402098e-04

Joint ci ratio: 1.950135e-01	ci left: 1.270425e-04	ci right 1.548188e-04	k: 403	n:2870000
Cons ci ratio: 3.386285e-01	ci left: 3.880088e-05	ci right 5.491964e-05	k: 133	n:2870000
KS ci ratio: 1.014586e-01	ci left: 4.934804e-04	ci right 5.465602e-04	k: 1491	n:2870000
KRTAP5-5   2870000 perm   3554 sec   (807 perm/sec)   p_kst 5.195122e-04   p_cons 4.634146e-05   p_joint 1.404181e-04

Joint ci ratio: 1.947726e-01	ci left: 1.269316e-04	ci right 1.546454e-04	k: 404	n:2880000
Cons ci ratio: 3.386285e-01	ci left: 3.866615e-05	ci right 5.472894e-05	k: 133	n:2880000
KS ci ratio: 1.012890e-01	ci left: 4.934590e-04	ci right 5.464425e-04	k: 1496	n:2880000
KRTAP5-5   2880000 perm   3577 sec   (805 perm/sec)   p_kst 5.194444e-04   p_cons 4.618056e-05   p_joint 1.402778e-04

Joint ci ratio: 2.426309e-01	ci left: 7.936168e-05	ci right 1.015913e-04	k: 260	n:2890000
Cons ci ratio: 3.386285e-01	ci left: 3.853236e-05	ci right 5.453957e-05	k: 133	n:2890000
KS ci ratio: 1.011877e-01	ci left: 4.927633e-04	ci right 5.456161e-04	k: 1499	n:2890000
KRTAP5-5   2890000 perm   3601 sec   (803 perm/sec)   p_kst 5.186851e-04   p_cons 4.602076e-05   p_joint 8.996540e-05

Joint ci ratio: 2.426309e-01	ci left: 7.908802e-05	ci right 1.012409e-04	k: 260	n:2900000
Cons ci ratio: 3.386285e-01	ci left: 3.839949e-05	ci right 5.435151e-05	k: 133	n:2900000
KS ci ratio: 1.010195e-01	ci left: 4.927447e-04	ci right 5.455024e-04	k: 1504	n:2900000
KRTAP5-5   2900000 perm   3624 sec   (800 perm/sec)   p_kst 5.186207e-04   p_cons 4.586207e-05   p_joint 8.965517e-05

Joint ci ratio: 2.426310e-01	ci left: 7.881624e-05	ci right 1.008930e-04	k: 260	n:2910000
Cons ci ratio: 3.386286e-01	ci left: 3.826753e-05	ci right 5.416473e-05	k: 133	n:2910000
KS ci ratio: 1.008521e-01	ci left: 4.927262e-04	ci right 5.453894e-04	k: 1509	n:2910000
KRTAP5-5   2910000 perm   3648 sec   (798 perm/sec)   p_kst 5.185567e-04   p_cons 4.570447e-05   p_joint 8.934708e-05

Joint ci ratio: 2.421675e-01	ci left: 7.886798e-05	ci right 1.009107e-04	k: 261	n:2920000
Cons ci ratio: 3.373720e-01	ci left: 3.844988e-05	ci right 5.435066e-05	k: 134	n:2920000
KS ci ratio: 1.006855e-01	ci left: 4.927080e-04	ci right 5.452771e-04	k: 1514	n:2920000
KRTAP5-5   2920000 perm   3672 sec   (795 perm/sec)   p_kst 5.184932e-04   p_cons 4.589041e-05   p_joint 8.938356e-05

Joint ci ratio: 2.412484e-01	ci left: 7.924007e-05	ci right 1.012902e-04	k: 263	n:2930000
Cons ci ratio: 3.361294e-01	ci left: 3.863109e-05	ci right 5.453521e-05	k: 135	n:2930000
KS ci ratio: 1.004867e-01	ci left: 4.930227e-04	ci right 5.455153e-04	k: 1520	n:2930000
KRTAP5-5   2930000 perm   3696 sec   (793 perm/sec)   p_kst 5.187713e-04   p_cons 4.607509e-05   p_joint 8.976109e-05

Joint ci ratio: 2.407928e-01	ci left: 7.929014e-05	ci right 1.013063e-04	k: 264	n:2940000
Cons ci ratio: 3.361294e-01	ci left: 3.849969e-05	ci right 5.434972e-05	k: 135	n:2940000
KS ci ratio: 1.002891e-01	ci left: 4.933353e-04	ci right 5.457519e-04	k: 1526	n:2940000
KRTAP5-5   2940000 perm   3719 sec   (791 perm/sec)   p_kst 5.190476e-04   p_cons 4.591837e-05   p_joint 8.979592e-05

Joint ci ratio: 2.403397e-01	ci left: 7.933991e-05	ci right 1.013223e-04	k: 265	n:2950000
Cons ci ratio: 3.349004e-01	ci left: 3.867962e-05	ci right 5.453291e-05	k: 136	n:2950000
KS ci ratio: 1.000926e-01	ci left: 4.936459e-04	ci right 5.459867e-04	k: 1532	n:2950000
KRTAP5-5   2950000 perm   3742 sec   (788 perm/sec)   p_kst 5.193220e-04   p_cons 4.610169e-05   p_joint 8.983051e-05

Joint ci ratio: 2.403398e-01	ci left: 7.907187e-05	ci right 1.009800e-04	k: 265	n:2960000
Cons ci ratio: 3.349004e-01	ci left: 3.854894e-05	ci right 5.434868e-05	k: 136	n:2960000
KS ci ratio: 9.996231e-02	ci left: 4.932957e-04	ci right 5.455273e-04	k: 1536	n:2960000
KRTAP5-5   2960000 perm   3766 sec   (786 perm/sec)   p_kst 5.189189e-04   p_cons 4.594595e-05   p_joint 8.952703e-05

Joint ci ratio: 2.403398e-01	ci left: 7.880563e-05	ci right 1.006400e-04	k: 265	n:2970000
Cons ci ratio: 3.349004e-01	ci left: 3.841915e-05	ci right 5.416569e-05	k: 136	n:2970000
KS ci ratio: 9.992988e-02	ci left: 4.919631e-04	ci right 5.440356e-04	k: 1537	n:2970000
KRTAP5-5   2970000 perm   3791 sec   (784 perm/sec)   p_kst 5.175084e-04   p_cons 4.579125e-05   p_joint 8.922559e-05

Joint ci ratio: 2.394413e-01	ci left: 7.917199e-05	ci right 1.010137e-04	k: 267	n:2980000
Cons ci ratio: 3.336848e-01	ci left: 3.859763e-05	ci right 5.434756e-05	k: 137	n:2980000
KS ci ratio: 9.970321e-02	ci left: 4.926026e-04	ci right 5.446176e-04	k: 1544	n:2980000
KRTAP5-5   2980000 perm   3814 sec   (781 perm/sec)   p_kst 5.181208e-04   p_cons 4.597315e-05   p_joint 8.959732e-05

Joint ci ratio: 2.389958e-01	ci left: 7.922160e-05	ci right 1.010303e-04	k: 268	n:2990000
Cons ci ratio: 3.336848e-01	ci left: 3.846854e-05	ci right 5.416580e-05	k: 137	n:2990000
KS ci ratio: 9.951016e-02	ci left: 4.929118e-04	ci right 5.448528e-04	k: 1550	n:2990000
KRTAP5-5   2990000 perm   3839 sec   (779 perm/sec)   p_kst 5.183946e-04   p_cons 4.581940e-05   p_joint 8.963211e-05

Joint ci ratio: 2.385528e-01	ci left: 7.927092e-05	ci right 1.010467e-04	k: 269	n:3000000
Cons ci ratio: 3.336848e-01	ci left: 3.834031e-05	ci right 5.398524e-05	k: 137	n:3000000
KS ci ratio: 9.938211e-02	ci left: 4.925689e-04	ci right 5.444031e-04	k: 1554	n:3000000
KRTAP5-5   3000000 perm   3863 sec   (777 perm/sec)   p_kst 5.180000e-04   p_cons 4.566667e-05   p_joint 8.966667e-05

Joint ci ratio: 2.385529e-01	ci left: 7.900756e-05	ci right 1.007110e-04	k: 269	n:3010000
Cons ci ratio: 3.336849e-01	ci left: 3.821294e-05	ci right 5.380589e-05	k: 137	n:3010000
KS ci ratio: 9.922272e-02	ci left: 4.925523e-04	ci right 5.442969e-04	k: 1559	n:3010000
KRTAP5-5   3010000 perm   3887 sec   (774 perm/sec)   p_kst 5.179402e-04   p_cons 4.551495e-05   p_joint 8.936877e-05

Joint ci ratio: 2.385529e-01	ci left: 7.874595e-05	ci right 1.003776e-04	k: 269	n:3020000
Cons ci ratio: 3.336849e-01	ci left: 3.808640e-05	ci right 5.362773e-05	k: 137	n:3020000
KS ci ratio: 9.909577e-02	ci left: 4.922130e-04	ci right 5.438519e-04	k: 1563	n:3020000
KRTAP5-5   3020000 perm   3912 sec   (772 perm/sec)   p_kst 5.175497e-04   p_cons 4.536424e-05   p_joint 8.907285e-05

Joint ci ratio: 2.385529e-01	ci left: 7.848606e-05	ci right 1.000463e-04	k: 269	n:3030000
Cons ci ratio: 3.336849e-01	ci left: 3.796070e-05	ci right 5.345074e-05	k: 137	n:3030000
KS ci ratio: 9.893775e-02	ci left: 4.921978e-04	ci right 5.437480e-04	k: 1568	n:3030000
KRTAP5-5   3030000 perm   3936 sec   (770 perm/sec)   p_kst 5.174917e-04   p_cons 4.521452e-05   p_joint 8.877888e-05

Joint ci ratio: 2.376742e-01	ci left: 7.884653e-05	ci right 1.004142e-04	k: 271	n:3040000
Cons ci ratio: 3.324824e-01	ci left: 3.813727e-05	ci right 5.363127e-05	k: 138	n:3040000
KS ci ratio: 9.878049e-02	ci left: 4.921828e-04	ci right 5.436448e-04	k: 1573	n:3040000
KRTAP5-5   3040000 perm   3960 sec   (768 perm/sec)   p_kst 5.174342e-04   p_cons 4.539474e-05   p_joint 8.914474e-05

Joint ci ratio: 2.376743e-01	ci left: 7.858802e-05	ci right 1.000850e-04	k: 271	n:3050000
Cons ci ratio: 3.324824e-01	ci left: 3.801223e-05	ci right 5.345543e-05	k: 138	n:3050000
KS ci ratio: 9.859274e-02	ci left: 4.924878e-04	ci right 5.438781e-04	k: 1579	n:3050000
KRTAP5-5   3050000 perm   3984 sec   (766 perm/sec)   p_kst 5.177049e-04   p_cons 4.524590e-05   p_joint 8.885246e-05

Joint ci ratio: 2.372386e-01	ci left: 7.863855e-05	ci right 1.001042e-04	k: 272	n:3060000
Cons ci ratio: 3.312928e-01	ci left: 3.818758e-05	ci right 5.363467e-05	k: 139	n:3060000
KS ci ratio: 9.846819e-02	ci left: 4.921533e-04	ci right 5.434401e-04	k: 1583	n:3060000
KRTAP5-5   3060000 perm   4009 sec   (763 perm/sec)   p_kst 5.173203e-04   p_cons 4.542484e-05   p_joint 8.888889e-05

Joint ci ratio: 2.363743e-01	ci left: 7.899522e-05	ci right 1.004681e-04	k: 274	n:3070000
Cons ci ratio: 3.312929e-01	ci left: 3.806319e-05	ci right 5.345996e-05	k: 139	n:3070000
KS ci ratio: 9.822043e-02	ci left: 4.930920e-04	ci right 5.443398e-04	k: 1591	n:3070000
KRTAP5-5   3070000 perm   4034 sec   (761 perm/sec)   p_kst 5.182410e-04   p_cons 4.527687e-05   p_joint 8.925081e-05

Joint ci ratio: 2.359457e-01	ci left: 7.904420e-05	ci right 1.004858e-04	k: 275	n:3080000
Cons ci ratio: 3.301159e-01	ci left: 3.823733e-05	ci right 5.363793e-05	k: 140	n:3080000
KS ci ratio: 9.794391e-02	ci left: 4.943415e-04	ci right 5.455662e-04	k: 1600	n:3080000
KRTAP5-5   3080000 perm   4059 sec   (759 perm/sec)   p_kst 5.194805e-04   p_cons 4.545455e-05   p_joint 8.928571e-05

Joint ci ratio: 2.359457e-01	ci left: 7.878840e-05	ci right 1.001606e-04	k: 275	n:3090000
Cons ci ratio: 3.301160e-01	ci left: 3.811358e-05	ci right 5.346434e-05	k: 140	n:3090000
KS ci ratio: 9.779133e-02	ci left: 4.943202e-04	ci right 5.454583e-04	k: 1605	n:3090000
KRTAP5-5   3090000 perm   4084 sec   (757 perm/sec)   p_kst 5.194175e-04   p_cons 4.530744e-05   p_joint 8.899676e-05

Joint ci ratio: 2.359457e-01	ci left: 7.853424e-05	ci right 9.983749e-05	k: 275	n:3100000
Cons ci ratio: 3.301160e-01	ci left: 3.799064e-05	ci right 5.329188e-05	k: 140	n:3100000
KS ci ratio: 9.773054e-02	ci left: 4.933550e-04	ci right 5.443597e-04	k: 1607	n:3100000
KRTAP5-5   3100000 perm   4109 sec   (754 perm/sec)   p_kst 5.183871e-04   p_cons 4.516129e-05   p_joint 8.870968e-05

Joint ci ratio: 2.359458e-01	ci left: 7.828172e-05	ci right 9.951647e-05	k: 275	n:3110000
Cons ci ratio: 3.301160e-01	ci left: 3.786848e-05	ci right 5.312052e-05	k: 140	n:3110000
KS ci ratio: 9.757895e-02	ci left: 4.933371e-04	ci right 5.442564e-04	k: 1612	n:3110000
KRTAP5-5   3110000 perm   4134 sec   (752 perm/sec)   p_kst 5.183280e-04   p_cons 4.501608e-05   p_joint 8.842444e-05

Joint ci ratio: 2.350955e-01	ci left: 7.863402e-05	ci right 9.987628e-05	k: 277	n:3120000
Cons ci ratio: 3.289516e-01	ci left: 3.804111e-05	ci right 5.329720e-05	k: 141	n:3120000
KS ci ratio: 9.739796e-02	ci left: 4.936321e-04	ci right 5.444819e-04	k: 1618	n:3120000
KRTAP5-5   3120000 perm   4159 sec   (750 perm/sec)   p_kst 5.185897e-04   p_cons 4.519231e-05   p_joint 8.878205e-05

Joint ci ratio: 2.346738e-01	ci left: 7.868348e-05	ci right 9.989544e-05	k: 278	n:3130000
Cons ci ratio: 3.277993e-01	ci left: 3.821272e-05	ci right 5.347265e-05	k: 142	n:3130000
KS ci ratio: 9.715817e-02	ci left: 4.945487e-04	ci right 5.453604e-04	k: 1626	n:3130000
KRTAP5-5   3130000 perm   4184 sec   (748 perm/sec)   p_kst 5.194888e-04   p_cons 4.536741e-05   p_joint 8.881789e-05

Joint ci ratio: 2.342543e-01	ci left: 7.873266e-05	ci right 9.991445e-05	k: 279	n:3140000
Cons ci ratio: 3.277994e-01	ci left: 3.809103e-05	ci right 5.330236e-05	k: 142	n:3140000
KS ci ratio: 9.703897e-02	ci left: 4.942167e-04	ci right 5.449284e-04	k: 1630	n:3140000
KRTAP5-5   3140000 perm   4208 sec   (746 perm/sec)   p_kst 5.191083e-04   p_cons 4.522293e-05   p_joint 8.885350e-05

Joint ci ratio: 2.334221e-01	ci left: 7.908044e-05	ci right 1.002693e-04	k: 281	n:3150000
Cons ci ratio: 3.255307e-01	ci left: 3.855296e-05	ci right 5.381994e-05	k: 144	n:3150000
KS ci ratio: 9.692022e-02	ci left: 4.938868e-04	ci right 5.444991e-04	k: 1634	n:3150000
KRTAP5-5   3150000 perm   4233 sec   (744 perm/sec)   p_kst 5.187302e-04   p_cons 4.571429e-05   p_joint 8.920635e-05

Joint ci ratio: 2.330093e-01	ci left: 7.912816e-05	ci right 1.002869e-04	k: 282	n:3160000
Cons ci ratio: 3.255308e-01	ci left: 3.843096e-05	ci right 5.364963e-05	k: 144	n:3160000
KS ci ratio: 9.683146e-02	ci left: 4.932502e-04	ci right 5.437484e-04	k: 1637	n:3160000
KRTAP5-5   3160000 perm   4258 sec   (742 perm/sec)   p_kst 5.180380e-04   p_cons 4.556962e-05   p_joint 8.924051e-05

Joint ci ratio: 1.868657e-01	ci left: 1.258334e-04	ci right 1.520656e-04	k: 439	n:3170000
Cons ci ratio: 3.244140e-01	ci left: 3.859945e-05	ci right 5.382149e-05	k: 145	n:3170000
KS ci ratio: 9.671346e-02	ci left: 4.929255e-04	ci right 5.433254e-04	k: 1641	n:3170000
KRTAP5-5   3170000 perm   4283 sec   (740 perm/sec)   p_kst 5.176656e-04   p_cons 4.574132e-05   p_joint 1.384858e-04

Joint ci ratio: 2.321903e-01	ci left: 7.922278e-05	ci right 1.003217e-04	k: 284	n:3180000
Cons ci ratio: 3.233086e-01	ci left: 3.876698e-05	ci right 5.399218e-05	k: 146	n:3180000
KS ci ratio: 9.662526e-02	ci left: 4.922960e-04	ci right 5.425831e-04	k: 1644	n:3180000
KRTAP5-5   3180000 perm   4308 sec   (738 perm/sec)   p_kst 5.169811e-04   p_cons 4.591195e-05   p_joint 8.930818e-05

Joint ci ratio: 1.443784e-01	ci left: 2.143531e-04	ci right 2.480070e-04	k: 736	n:3190000
Cons ci ratio: 3.211314e-01	ci left: 3.922171e-05	ci right 5.450042e-05	k: 148	n:3190000
KS ci ratio: 9.642030e-02	ci left: 4.928941e-04	ci right 5.431295e-04	k: 1651	n:3190000
KRTAP5-5   3190000 perm   4333 sec   (736 perm/sec)   p_kst 5.175549e-04   p_cons 4.639498e-05   p_joint 2.307210e-04

Joint ci ratio: 1.441829e-01	ci left: 2.142857e-04	ci right 2.478796e-04	k: 738	n:3200000
Cons ci ratio: 3.211314e-01	ci left: 3.909914e-05	ci right 5.433010e-05	k: 148	n:3200000
KS ci ratio: 9.612972e-02	ci left: 4.944036e-04	ci right 5.446324e-04	k: 1661	n:3200000
KRTAP5-5   3200000 perm   4358 sec   (734 perm/sec)   p_kst 5.190625e-04   p_cons 4.625000e-05   p_joint 2.306250e-04

Joint ci ratio: 2.309778e-01	ci left: 7.936274e-05	ci right 1.003728e-04	k: 287	n:3210000
Cons ci ratio: 3.211314e-01	ci left: 3.897733e-05	ci right 5.416085e-05	k: 148	n:3210000
KS ci ratio: 9.604311e-02	ci left: 4.937755e-04	ci right 5.438928e-04	k: 1664	n:3210000
KRTAP5-5   3210000 perm   4383 sec   (732 perm/sec)   p_kst 5.183801e-04   p_cons 4.610592e-05   p_joint 8.940810e-05

Joint ci ratio: 2.309778e-01	ci left: 7.911627e-05	ci right 1.000611e-04	k: 287	n:3220000
Cons ci ratio: 3.211314e-01	ci left: 3.885629e-05	ci right 5.399265e-05	k: 148	n:3220000
KS ci ratio: 9.601434e-02	ci left: 4.925451e-04	ci right 5.425217e-04	k: 1665	n:3220000
KRTAP5-5   3220000 perm   4409 sec   (730 perm/sec)   p_kst 5.170807e-04   p_cons 4.596273e-05   p_joint 8.913043e-05

Joint ci ratio: 1.439883e-01	ci left: 2.128923e-04	ci right 2.462188e-04	k: 740	n:3230000
Cons ci ratio: 3.211315e-01	ci left: 3.873599e-05	ci right 5.382549e-05	k: 148	n:3230000
KS ci ratio: 9.592805e-02	ci left: 4.919267e-04	ci right 5.417931e-04	k: 1668	n:3230000
KRTAP5-5   3230000 perm   4435 sec   (728 perm/sec)   p_kst 5.164087e-04   p_cons 4.582043e-05   p_joint 2.291022e-04

Joint ci ratio: 2.305779e-01	ci left: 7.891870e-05	ci right 9.976989e-05	k: 288	n:3240000
Cons ci ratio: 3.211315e-01	ci left: 3.861643e-05	ci right 5.365936e-05	k: 148	n:3240000
KS ci ratio: 9.572748e-02	ci left: 4.925172e-04	ci right 5.423332e-04	k: 1675	n:3240000
KRTAP5-5   3240000 perm   4461 sec   (726 perm/sec)   p_kst 5.169753e-04   p_cons 4.567901e-05   p_joint 8.888889e-05

Joint ci ratio: 2.301800e-01	ci left: 7.896581e-05	ci right 9.978832e-05	k: 289	n:3250000
Cons ci ratio: 3.211315e-01	ci left: 3.849761e-05	ci right 5.349426e-05	k: 148	n:3250000
KS ci ratio: 9.561347e-02	ci left: 4.922030e-04	ci right 5.419247e-04	k: 1679	n:3250000
KRTAP5-5   3250000 perm   4487 sec   (724 perm/sec)   p_kst 5.166154e-04   p_cons 4.553846e-05   p_joint 8.892308e-05

Joint ci ratio: 2.297842e-01	ci left: 7.901266e-05	ci right 9.980661e-05	k: 290	n:3260000
Cons ci ratio: 3.211315e-01	ci left: 3.837952e-05	ci right 5.333017e-05	k: 148	n:3260000
KS ci ratio: 9.552825e-02	ci left: 4.915915e-04	ci right 5.412046e-04	k: 1682	n:3260000
KRTAP5-5   3260000 perm   4513 sec   (722 perm/sec)   p_kst 5.159509e-04   p_cons 4.539877e-05   p_joint 8.895706e-05

Joint ci ratio: 2.293904e-01	ci left: 7.905925e-05	ci right 9.982476e-05	k: 291	n:3270000
Cons ci ratio: 3.200593e-01	ci left: 3.854336e-05	ci right 5.349741e-05	k: 149	n:3270000
KS ci ratio: 9.541494e-02	ci left: 4.912822e-04	ci right 5.408020e-04	k: 1686	n:3270000
KRTAP5-5   3270000 perm   4539 sec   (720 perm/sec)   p_kst 5.155963e-04   p_cons 4.556575e-05   p_joint 8.899083e-05

Joint ci ratio: 2.289986e-01	ci left: 7.910559e-05	ci right 9.984277e-05	k: 292	n:3280000
Cons ci ratio: 3.200593e-01	ci left: 3.842585e-05	ci right 5.333431e-05	k: 149	n:3280000
KS ci ratio: 9.516139e-02	ci left: 4.924629e-04	ci right 5.419624e-04	k: 1695	n:3280000
KRTAP5-5   3280000 perm   4565 sec   (718 perm/sec)   p_kst 5.167683e-04   p_cons 4.542683e-05   p_joint 8.902439e-05

Joint ci ratio: 2.278351e-01	ci left: 7.972483e-05	ci right 1.005032e-04	k: 295	n:3290000
Cons ci ratio: 3.179466e-01	ci left: 3.886829e-05	ci right 5.382861e-05	k: 151	n:3290000
KS ci ratio: 9.488201e-02	ci left: 4.939333e-04	ci right 5.434268e-04	k: 1705	n:3290000
KRTAP5-5   3290000 perm   4591 sec   (717 perm/sec)   p_kst 5.182371e-04   p_cons 4.589666e-05   p_joint 8.966565e-05

Joint ci ratio: 2.274512e-01	ci left: 7.976899e-05	ci right 1.005190e-04	k: 296	n:3300000
Cons ci ratio: 3.169058e-01	ci left: 3.902940e-05	ci right 5.399259e-05	k: 152	n:3300000
KS ci ratio: 9.471558e-02	ci left: 4.942116e-04	ci right 5.436414e-04	k: 1711	n:3300000
KRTAP5-5   3300000 perm   4618 sec   (715 perm/sec)   p_kst 5.184848e-04   p_cons 4.606061e-05   p_joint 8.969697e-05

Joint ci ratio: 2.270692e-01	ci left: 7.981292e-05	ci right 1.005346e-04	k: 297	n:3310000
Cons ci ratio: 3.169058e-01	ci left: 3.891148e-05	ci right 5.382947e-05	k: 152	n:3310000
KS ci ratio: 9.460514e-02	ci left: 4.938984e-04	ci right 5.432360e-04	k: 1715	n:3310000
KRTAP5-5   3310000 perm   4645 sec   (713 perm/sec)   p_kst 5.181269e-04   p_cons 4.592145e-05   p_joint 8.972810e-05

Joint ci ratio: 2.270693e-01	ci left: 7.957252e-05	ci right 1.002317e-04	k: 297	n:3320000
Cons ci ratio: 3.169059e-01	ci left: 3.879428e-05	ci right 5.366733e-05	k: 152	n:3320000
KS ci ratio: 9.438535e-02	ci left: 4.947635e-04	ci right 5.440663e-04	k: 1723	n:3320000
KRTAP5-5   3320000 perm   4671 sec   (711 perm/sec)   p_kst 5.189759e-04   p_cons 4.578313e-05   p_joint 8.945783e-05

Joint ci ratio: 2.263111e-01	ci left: 7.990006e-05	ci right 1.005654e-04	k: 299	n:3330000
Cons ci ratio: 3.158753e-01	ci left: 3.895424e-05	ci right 5.383023e-05	k: 153	n:3330000
KS ci ratio: 9.424878e-02	ci left: 4.947438e-04	ci right 5.439694e-04	k: 1728	n:3330000
KRTAP5-5   3330000 perm   4697 sec   (709 perm/sec)   p_kst 5.189189e-04   p_cons 4.594595e-05   p_joint 8.978979e-05

Joint ci ratio: 2.259348e-01	ci left: 7.994328e-05	ci right 1.005806e-04	k: 300	n:3340000
Cons ci ratio: 3.148546e-01	ci left: 3.911332e-05	ci right 5.399208e-05	k: 154	n:3340000
KS ci ratio: 9.397733e-02	ci left: 4.961861e-04	ci right 5.454052e-04	k: 1738	n:3340000
KRTAP5-5   3340000 perm   4724 sec   (707 perm/sec)   p_kst 5.203593e-04   p_cons 4.610778e-05   p_joint 8.982036e-05

Joint ci ratio: 2.255605e-01	ci left: 7.998627e-05	ci right 1.005958e-04	k: 301	n:3350000
Cons ci ratio: 3.138438e-01	ci left: 3.927152e-05	ci right 5.415289e-05	k: 155	n:3350000
KS ci ratio: 9.368143e-02	ci left: 4.979115e-04	ci right 5.471377e-04	k: 1749	n:3350000
KRTAP5-5   3350000 perm   4752 sec   (705 perm/sec)   p_kst 5.220896e-04   p_cons 4.626866e-05   p_joint 8.985075e-05

Joint ci ratio: 2.248172e-01	ci left: 8.030988e-05	ci right 1.009251e-04	k: 303	n:3360000
Cons ci ratio: 3.128427e-01	ci left: 3.942886e-05	ci right 5.431267e-05	k: 156	n:3360000
KS ci ratio: 9.349460e-02	ci left: 4.984642e-04	ci right 5.476414e-04	k: 1756	n:3360000
KRTAP5-5   3360000 perm   4787 sec   (702 perm/sec)   p_kst 5.226190e-04   p_cons 4.642857e-05   p_joint 9.017857e-05

Joint ci ratio: 2.244484e-01	ci left: 8.035161e-05	ci right 1.009390e-04	k: 304	n:3370000
Cons ci ratio: 3.128427e-01	ci left: 3.931186e-05	ci right 5.415151e-05	k: 156	n:3370000
KS ci ratio: 9.333536e-02	ci left: 4.987239e-04	ci right 5.478383e-04	k: 1762	n:3370000
KRTAP5-5   3370000 perm   4814 sec   (700 perm/sec)   p_kst 5.228487e-04   p_cons 4.629080e-05   p_joint 9.020772e-05

Joint ci ratio: 2.237160e-01	ci left: 8.067239e-05	ci right 1.012653e-04	k: 306	n:3380000
Cons ci ratio: 3.128427e-01	ci left: 3.919555e-05	ci right 5.399129e-05	k: 156	n:3380000
KS ci ratio: 9.317693e-02	ci left: 4.989821e-04	ci right 5.480340e-04	k: 1768	n:3380000
KRTAP5-5   3380000 perm   4841 sec   (698 perm/sec)   p_kst 5.230769e-04   p_cons 4.615385e-05   p_joint 9.053254e-05

Joint ci ratio: 2.233525e-01	ci left: 8.071289e-05	ci right 1.012780e-04	k: 307	n:3390000
Cons ci ratio: 3.118511e-01	ci left: 3.935180e-05	ci right 5.415006e-05	k: 157	n:3390000
KS ci ratio: 9.299310e-02	ci left: 4.995270e-04	ci right 5.485303e-04	k: 1775	n:3390000
KRTAP5-5   3390000 perm   4868 sec   (696 perm/sec)   p_kst 5.235988e-04   p_cons 4.631268e-05   p_joint 9.056047e-05

Joint ci ratio: 2.233526e-01	ci left: 8.047550e-05	ci right 1.009802e-04	k: 307	n:3400000
Cons ci ratio: 3.118512e-01	ci left: 3.923606e-05	ci right 5.399080e-05	k: 157	n:3400000
KS ci ratio: 9.288857e-02	ci left: 4.992069e-04	ci right 5.481208e-04	k: 1779	n:3400000
KRTAP5-5   3400000 perm   4895 sec   (695 perm/sec)   p_kst 5.232353e-04   p_cons 4.617647e-05   p_joint 9.029412e-05

Joint ci ratio: 2.233526e-01	ci left: 8.023950e-05	ci right 1.006840e-04	k: 307	n:3410000
Cons ci ratio: 3.118512e-01	ci left: 3.912099e-05	ci right 5.383247e-05	k: 157	n:3410000
KS ci ratio: 9.283648e-02	ci left: 4.983159e-04	ci right 5.471136e-04	k: 1781	n:3410000
KRTAP5-5   3410000 perm   4922 sec   (693 perm/sec)   p_kst 5.222874e-04   p_cons 4.604106e-05   p_joint 9.002933e-05

Joint ci ratio: 2.226309e-01	ci left: 8.055702e-05	ci right 1.010070e-04	k: 309	n:3420000
Cons ci ratio: 3.108689e-01	ci left: 3.927616e-05	ci right 5.399023e-05	k: 158	n:3420000
KS ci ratio: 9.265465e-02	ci left: 4.988581e-04	ci right 5.476081e-04	k: 1788	n:3420000
KRTAP5-5   3420000 perm   4950 sec   (691 perm/sec)   p_kst 5.228070e-04   p_cons 4.619883e-05   p_joint 9.035088e-05

Joint ci ratio: 2.219162e-01	ci left: 8.087279e-05	ci right 1.013281e-04	k: 311	n:3430000
Cons ci ratio: 3.098959e-01	ci left: 3.943049e-05	ci right 5.414700e-05	k: 159	n:3430000
KS ci ratio: 9.249965e-02	ci left: 4.991125e-04	ci right 5.478013e-04	k: 1794	n:3430000
KRTAP5-5   3430000 perm   4977 sec   (689 perm/sec)   p_kst 5.230321e-04   p_cons 4.635569e-05   p_joint 9.067055e-05

Joint ci ratio: 2.219162e-01	ci left: 8.063769e-05	ci right 1.010335e-04	k: 311	n:3440000
Cons ci ratio: 3.098960e-01	ci left: 3.931587e-05	ci right 5.398960e-05	k: 159	n:3440000
KS ci ratio: 9.229418e-02	ci left: 4.999334e-04	ci right 5.485881e-04	k: 1802	n:3440000
KRTAP5-5   3440000 perm   5005 sec   (687 perm/sec)   p_kst 5.238372e-04   p_cons 4.622093e-05   p_joint 9.040698e-05

Joint ci ratio: 2.215614e-01	ci left: 8.067771e-05	ci right 1.010466e-04	k: 312	n:3450000
Cons ci ratio: 3.089320e-01	ci left: 3.946926e-05	ci right 5.414540e-05	k: 160	n:3450000
KS ci ratio: 9.211551e-02	ci left: 5.004666e-04	ci right 5.490738e-04	k: 1809	n:3450000
KRTAP5-5   3450000 perm   5033 sec   (685 perm/sec)   p_kst 5.243478e-04   p_cons 4.637681e-05   p_joint 9.043478e-05

Joint ci ratio: 2.215614e-01	ci left: 8.044454e-05	ci right 1.007545e-04	k: 312	n:3460000
Cons ci ratio: 3.089320e-01	ci left: 3.935519e-05	ci right 5.398891e-05	k: 160	n:3460000
KS ci ratio: 9.203930e-02	ci left: 4.998672e-04	ci right 5.483739e-04	k: 1812	n:3460000
KRTAP5-5   3460000 perm   5061 sec   (684 perm/sec)   p_kst 5.236994e-04   p_cons 4.624277e-05   p_joint 9.017341e-05

Joint ci ratio: 2.215615e-01	ci left: 8.021271e-05	ci right 1.004642e-04	k: 312	n:3470000
Cons ci ratio: 3.089321e-01	ci left: 3.924177e-05	ci right 5.383332e-05	k: 160	n:3470000
KS ci ratio: 9.193795e-02	ci left: 4.995529e-04	ci right 5.479728e-04	k: 1816	n:3470000
KRTAP5-5   3470000 perm   5089 sec   (682 perm/sec)   p_kst 5.233429e-04   p_cons 4.610951e-05   p_joint 8.991354e-05

Joint ci ratio: 2.212084e-01	ci left: 8.025364e-05	ci right 1.004787e-04	k: 313	n:3480000
Cons ci ratio: 3.089321e-01	ci left: 3.912901e-05	ci right 5.367863e-05	k: 160	n:3480000
KS ci ratio: 9.183693e-02	ci left: 4.992404e-04	ci right 5.475740e-04	k: 1820	n:3480000
KRTAP5-5   3480000 perm   5121 sec   (680 perm/sec)   p_kst 5.229885e-04   p_cons 4.597701e-05   p_joint 8.994253e-05

Joint ci ratio: 2.205072e-01	ci left: 8.056505e-05	ci right 1.007956e-04	k: 315	n:3490000
Cons ci ratio: 3.070309e-01	ci left: 3.954568e-05	ci right 5.414203e-05	k: 162	n:3490000
KS ci ratio: 9.166091e-02	ci left: 4.997696e-04	ci right 5.480568e-04	k: 1827	n:3490000
KRTAP5-5   3490000 perm   5148 sec   (678 perm/sec)   p_kst 5.234957e-04   p_cons 4.641834e-05   p_joint 9.025788e-05

Joint ci ratio: 2.201591e-01	ci left: 8.060481e-05	ci right 1.008090e-04	k: 316	n:3500000
Cons ci ratio: 3.070309e-01	ci left: 3.943269e-05	ci right 5.398734e-05	k: 162	n:3500000
KS ci ratio: 9.158581e-02	ci left: 4.991792e-04	ci right 5.473677e-04	k: 1830	n:3500000
KRTAP5-5   3500000 perm   5176 sec   (676 perm/sec)   p_kst 5.228571e-04   p_cons 4.628571e-05   p_joint 9.028571e-05

Joint ci ratio: 2.201592e-01	ci left: 8.037517e-05	ci right 1.005218e-04	k: 316	n:3510000
Cons ci ratio: 3.070309e-01	ci left: 3.932034e-05	ci right 5.383353e-05	k: 162	n:3510000
KS ci ratio: 9.146102e-02	ci left: 4.991490e-04	ci right 5.472653e-04	k: 1835	n:3510000
KRTAP5-5   3510000 perm   5203 sec   (675 perm/sec)   p_kst 5.227920e-04   p_cons 4.615385e-05   p_joint 9.002849e-05

Joint ci ratio: 2.198127e-01	ci left: 8.041527e-05	ci right 1.005360e-04	k: 317	n:3520000
Cons ci ratio: 3.070309e-01	ci left: 3.920864e-05	ci right 5.368060e-05	k: 162	n:3520000
KS ci ratio: 9.136157e-02	ci left: 4.988413e-04	ci right 5.468729e-04	k: 1839	n:3520000
KRTAP5-5   3520000 perm   5232 sec   (673 perm/sec)   p_kst 5.224432e-04   p_cons 4.602273e-05   p_joint 9.005682e-05

Joint ci ratio: 2.198128e-01	ci left: 8.018746e-05	ci right 1.002512e-04	k: 317	n:3530000
Cons ci ratio: 3.070310e-01	ci left: 3.909757e-05	ci right 5.352853e-05	k: 162	n:3530000
KS ci ratio: 9.123769e-02	ci left: 4.988122e-04	ci right 5.467725e-04	k: 1844	n:3530000
KRTAP5-5   3530000 perm   5259 sec   (671 perm/sec)   p_kst 5.223796e-04   p_cons 4.589235e-05   p_joint 8.980170e-05

Joint ci ratio: 2.194679e-01	ci left: 8.022789e-05	ci right 1.002660e-04	k: 318	n:3540000
Cons ci ratio: 3.070310e-01	ci left: 3.898712e-05	ci right 5.337732e-05	k: 162	n:3540000
KS ci ratio: 9.111432e-02	ci left: 4.987834e-04	ci right 5.466725e-04	k: 1849	n:3540000
KRTAP5-5   3540000 perm   5287 sec   (670 perm/sec)   p_kst 5.223164e-04   p_cons 4.576271e-05   p_joint 8.983051e-05

Joint ci ratio: 2.187831e-01	ci left: 8.053436e-05	ci right 1.005778e-04	k: 320	n:3550000
Cons ci ratio: 3.060935e-01	ci left: 3.913732e-05	ci right 5.353025e-05	k: 163	n:3550000
KS ci ratio: 9.099144e-02	ci left: 4.987547e-04	ci right 5.465731e-04	k: 1854	n:3550000
KRTAP5-5   3550000 perm   5315 sec   (668 perm/sec)   p_kst 5.222535e-04   p_cons 4.591549e-05   p_joint 9.014085e-05

Joint ci ratio: 2.184431e-01	ci left: 8.057366e-05	ci right 1.005915e-04	k: 321	n:3560000
Cons ci ratio: 3.051645e-01	ci left: 3.928675e-05	ci right 5.368226e-05	k: 164	n:3560000
KS ci ratio: 9.094247e-02	ci left: 4.979028e-04	ci right 5.456124e-04	k: 1856	n:3560000
KRTAP5-5   3560000 perm   5343 sec   (666 perm/sec)   p_kst 5.213483e-04   p_cons 4.606742e-05   p_joint 9.016854e-05

Joint ci ratio: 2.170988e-01	ci left: 8.140731e-05	ci right 1.014912e-04	k: 325	n:3570000
Cons ci ratio: 3.033316e-01	ci left: 3.969416e-05	ci right 5.413474e-05	k: 166	n:3570000
KS ci ratio: 9.072284e-02	ci left: 4.989718e-04	ci right 5.466623e-04	k: 1865	n:3570000
KRTAP5-5   3570000 perm   5372 sec   (665 perm/sec)   p_kst 5.224090e-04   p_cons 4.649860e-05   p_joint 9.103641e-05

Joint ci ratio: 2.170988e-01	ci left: 8.117991e-05	ci right 1.012077e-04	k: 325	n:3580000
Cons ci ratio: 3.033316e-01	ci left: 3.958329e-05	ci right 5.398353e-05	k: 166	n:3580000
KS ci ratio: 9.060154e-02	ci left: 4.989430e-04	ci right 5.465636e-04	k: 1870	n:3580000
KRTAP5-5   3580000 perm   5400 sec   (663 perm/sec)   p_kst 5.223464e-04   p_cons 4.636872e-05   p_joint 9.078212e-05

Joint ci ratio: 2.164359e-01	ci left: 8.148064e-05	ci right 1.015131e-04	k: 327	n:3590000
Cons ci ratio: 3.024274e-01	ci left: 3.973041e-05	ci right 5.413281e-05	k: 167	n:3590000
KS ci ratio: 9.038437e-02	ci left: 5.000035e-04	ci right 5.476048e-04	k: 1879	n:3590000
KRTAP5-5   3590000 perm   5429 sec   (661 perm/sec)   p_kst 5.233983e-04   p_cons 4.651811e-05   p_joint 9.108635e-05

Joint ci ratio: 2.164359e-01	ci left: 8.125431e-05	ci right 1.012311e-04	k: 327	n:3600000
Cons ci ratio: 3.024275e-01	ci left: 3.962005e-05	ci right 5.398244e-05	k: 167	n:3600000
KS ci ratio: 9.028839e-02	ci left: 4.997006e-04	ci right 5.472199e-04	k: 1883	n:3600000
KRTAP5-5   3600000 perm   5457 sec   (660 perm/sec)   p_kst 5.230556e-04   p_cons 4.638889e-05   p_joint 9.083333e-05

Joint ci ratio: 2.164359e-01	ci left: 8.102922e-05	ci right 1.009507e-04	k: 327	n:3610000
Cons ci ratio: 3.024275e-01	ci left: 3.951030e-05	ci right 5.383291e-05	k: 167	n:3610000
KS ci ratio: 9.021661e-02	ci left: 4.991286e-04	ci right 5.465539e-04	k: 1886	n:3610000
KRTAP5-5   3610000 perm   5485 sec   (658 perm/sec)   p_kst 5.224377e-04   p_cons 4.626039e-05   p_joint 9.058172e-05

Joint ci ratio: 1.737387e-01	ci left: 1.283928e-04	ci right 1.530814e-04	k: 508	n:3620000
Cons ci ratio: 3.024275e-01	ci left: 3.940115e-05	ci right 5.368420e-05	k: 167	n:3620000
KS ci ratio: 9.012116e-02	ci left: 4.988299e-04	ci right 5.461739e-04	k: 1890	n:3620000
KRTAP5-5   3620000 perm   5513 sec   (657 perm/sec)   p_kst 5.220994e-04   p_cons 4.613260e-05   p_joint 1.403315e-04

Joint ci ratio: 2.157791e-01	ci left: 8.110393e-05	ci right 1.009752e-04	k: 329	n:3630000
Cons ci ratio: 3.024275e-01	ci left: 3.929261e-05	ci right 5.353631e-05	k: 167	n:3630000
KS ci ratio: 8.990742e-02	ci left: 4.998792e-04	ci right 5.472044e-04	k: 1899	n:3630000
KRTAP5-5   3630000 perm   5541 sec   (655 perm/sec)   p_kst 5.231405e-04   p_cons 4.600551e-05   p_joint 9.063361e-05

Joint ci ratio: 1.733984e-01	ci left: 1.282129e-04	ci right 1.528136e-04	k: 510	n:3640000
Cons ci ratio: 3.015314e-01	ci left: 3.943858e-05	ci right 5.368471e-05	k: 168	n:3640000
KS ci ratio: 8.981294e-02	ci left: 4.995801e-04	ci right 5.468247e-04	k: 1903	n:3640000
KRTAP5-5   3640000 perm   5569 sec   (654 perm/sec)   p_kst 5.228022e-04   p_cons 4.615385e-05   p_joint 1.401099e-04

Joint ci ratio: 2.154529e-01	ci left: 8.091870e-05	ci right 1.007107e-04	k: 330	n:3650000
Cons ci ratio: 3.015314e-01	ci left: 3.933053e-05	ci right 5.353763e-05	k: 168	n:3650000
KS ci ratio: 8.967175e-02	ci left: 4.998184e-04	ci right 5.470073e-04	k: 1909	n:3650000
KRTAP5-5   3650000 perm   5597 sec   (652 perm/sec)   p_kst 5.230137e-04   p_cons 4.602740e-05   p_joint 9.041096e-05

Joint ci ratio: 2.148049e-01	ci left: 8.121462e-05	ci right 1.010114e-04	k: 332	n:3660000
Cons ci ratio: 2.997628e-01	ci left: 3.972830e-05	ci right 5.397889e-05	k: 170	n:3660000
KS ci ratio: 8.957802e-02	ci left: 4.995211e-04	ci right 5.466301e-04	k: 1913	n:3660000
KRTAP5-5   3660000 perm   5626 sec   (651 perm/sec)   p_kst 5.226776e-04   p_cons 4.644809e-05   p_joint 9.071038e-05

Joint ci ratio: 1.723892e-01	ci left: 1.287290e-04	ci right 1.532700e-04	k: 516	n:3670000
Cons ci ratio: 2.997629e-01	ci left: 3.962005e-05	ci right 5.383181e-05	k: 170	n:3670000
KS ci ratio: 8.941464e-02	ci left: 5.000247e-04	ci right 5.470907e-04	k: 1920	n:3670000
KRTAP5-5   3670000 perm   5655 sec   (649 perm/sec)   p_kst 5.231608e-04   p_cons 4.632153e-05   p_joint 1.405995e-04

Joint ci ratio: 2.138437e-01	ci left: 8.154470e-05	ci right 1.013213e-04	k: 335	n:3680000
Cons ci ratio: 2.997629e-01	ci left: 3.951239e-05	ci right 5.368553e-05	k: 170	n:3680000
KS ci ratio: 8.925215e-02	ci left: 5.005256e-04	ci right 5.475487e-04	k: 1927	n:3680000
KRTAP5-5   3680000 perm   5684 sec   (647 perm/sec)   p_kst 5.236413e-04   p_cons 4.619565e-05   p_joint 9.103261e-05

Joint ci ratio: 2.138438e-01	ci left: 8.132371e-05	ci right 1.010467e-04	k: 335	n:3690000
Cons ci ratio: 2.997629e-01	ci left: 3.940531e-05	ci right 5.354004e-05	k: 170	n:3690000
KS ci ratio: 8.915973e-02	ci left: 5.002290e-04	ci right 5.471730e-04	k: 1931	n:3690000
KRTAP5-5   3690000 perm   5713 sec   (646 perm/sec)   p_kst 5.233062e-04   p_cons 4.607046e-05   p_joint 9.078591e-05

Joint ci ratio: 1.717262e-01	ci left: 1.287198e-04	ci right 1.531548e-04	k: 520	n:3700000
Cons ci ratio: 2.980251e-01	ci left: 3.979882e-05	ci right 5.397628e-05	k: 172	n:3700000
KS ci ratio: 8.902159e-02	ci left: 5.004626e-04	ci right 5.473519e-04	k: 1937	n:3700000
KRTAP5-5   3700000 perm   5742 sec   (644 perm/sec)   p_kst 5.235135e-04   p_cons 4.648649e-05   p_joint 1.405405e-04

Joint ci ratio: 1.715616e-01	ci left: 1.286308e-04	ci right 1.530231e-04	k: 521	n:3710000
Cons ci ratio: 2.971674e-01	ci left: 3.994097e-05	ci right 5.412040e-05	k: 173	n:3710000
KS ci ratio: 8.897573e-02	ci left: 4.996407e-04	ci right 5.464276e-04	k: 1939	n:3710000
KRTAP5-5   3710000 perm   5772 sec   (643 perm/sec)   p_kst 5.226415e-04   p_cons 4.663073e-05   p_joint 1.404313e-04

Joint ci ratio: 1.713976e-01	ci left: 1.285423e-04	ci right 1.528921e-04	k: 522	n:3720000
Cons ci ratio: 2.963171e-01	ci left: 4.008241e-05	ci right 5.426369e-05	k: 174	n:3720000
KS ci ratio: 8.888416e-02	ci left: 4.993489e-04	ci right 5.460579e-04	k: 1943	n:3720000
KRTAP5-5   3720000 perm   5801 sec   (641 perm/sec)   p_kst 5.223118e-04   p_cons 4.677419e-05   p_joint 1.403226e-04

Joint ci ratio: 1.710708e-01	ci left: 1.287109e-04	ci right 1.530414e-04	k: 524	n:3730000
Cons ci ratio: 2.963172e-01	ci left: 3.997495e-05	ci right 5.411821e-05	k: 174	n:3730000
KS ci ratio: 8.877008e-02	ci left: 4.993209e-04	ci right 5.459642e-04	k: 1948	n:3730000
KRTAP5-5   3730000 perm   5830 sec   (640 perm/sec)   p_kst 5.222520e-04   p_cons 4.664879e-05   p_joint 1.404826e-04

Joint ci ratio: 1.707458e-01	ci left: 1.288786e-04	ci right 1.531898e-04	k: 526	n:3740000
Cons ci ratio: 2.954741e-01	ci left: 4.011560e-05	ci right 5.426067e-05	k: 175	n:3740000
KS ci ratio: 8.870186e-02	ci left: 4.987701e-04	ci right 5.453244e-04	k: 1951	n:3740000
KRTAP5-5   3740000 perm   5859 sec   (638 perm/sec)   p_kst 5.216578e-04   p_cons 4.679144e-05   p_joint 1.406417e-04

Joint ci ratio: 1.704227e-01	ci left: 1.290455e-04	ci right 1.533374e-04	k: 528	n:3750000
Cons ci ratio: 2.946382e-01	ci left: 4.025556e-05	ci right 5.440233e-05	k: 176	n:3750000
KS ci ratio: 8.845292e-02	ci left: 5.003084e-04	ci right 5.468684e-04	k: 1962	n:3750000
KRTAP5-5   3750000 perm   5890 sec   (637 perm/sec)   p_kst 5.232000e-04   p_cons 4.693333e-05   p_joint 1.408000e-04

Joint ci ratio: 1.702619e-01	ci left: 1.289569e-04	ci right 1.532068e-04	k: 529	n:3760000
Cons ci ratio: 2.946383e-01	ci left: 4.014849e-05	ci right 5.425764e-05	k: 176	n:3760000
KS ci ratio: 8.829561e-02	ci left: 5.007984e-04	ci right 5.473168e-04	k: 1969	n:3760000
KRTAP5-5   3760000 perm   5920 sec   (635 perm/sec)   p_kst 5.236702e-04   p_cons 4.680851e-05   p_joint 1.406915e-04

Joint ci ratio: 1.701015e-01	ci left: 1.288688e-04	ci right 1.530770e-04	k: 530	n:3770000
Cons ci ratio: 2.946383e-01	ci left: 4.004200e-05	ci right 5.411372e-05	k: 176	n:3770000
KS ci ratio: 8.818377e-02	ci left: 5.007670e-04	ci right 5.472206e-04	k: 1974	n:3770000
KRTAP5-5   3770000 perm   5949 sec   (634 perm/sec)   p_kst 5.236074e-04   p_cons 4.668435e-05   p_joint 1.405836e-04

Joint ci ratio: 1.697821e-01	ci left: 1.290345e-04	ci right 1.532236e-04	k: 532	n:3780000
Cons ci ratio: 2.946383e-01	ci left: 3.993607e-05	ci right 5.397056e-05	k: 176	n:3780000
KS ci ratio: 8.807236e-02	ci left: 5.007358e-04	ci right 5.471248e-04	k: 1979	n:3780000
KRTAP5-5   3780000 perm   5979 sec   (632 perm/sec)   p_kst 5.235450e-04   p_cons 4.656085e-05   p_joint 1.407407e-04

Joint ci ratio: 1.696230e-01	ci left: 1.289467e-04	ci right 1.530944e-04	k: 533	n:3790000
Cons ci ratio: 2.946383e-01	ci left: 3.983069e-05	ci right 5.382816e-05	k: 176	n:3790000
KS ci ratio: 8.796137e-02	ci left: 5.007049e-04	ci right 5.470295e-04	k: 1984	n:3790000
KRTAP5-5   3790000 perm   6009 sec   (631 perm/sec)   p_kst 5.234828e-04   p_cons 4.643799e-05   p_joint 1.406332e-04

Joint ci ratio: 2.101244e-01	ci left: 8.195987e-05	ci right 1.014470e-04	k: 347	n:3800000
Cons ci ratio: 2.938095e-01	ci left: 3.996961e-05	ci right 5.396903e-05	k: 177	n:3800000
KS ci ratio: 8.780666e-02	ci left: 5.011888e-04	ci right 5.474725e-04	k: 1991	n:3800000
KRTAP5-5   3800000 perm   6039 sec   (629 perm/sec)   p_kst 5.239474e-04   p_cons 4.657895e-05   p_joint 9.131579e-05

Joint ci ratio: 2.089270e-01	ci left: 8.273954e-05	ci right 1.022856e-04	k: 351	n:3810000
Cons ci ratio: 2.938095e-01	ci left: 3.986471e-05	ci right 5.382738e-05	k: 177	n:3810000
KS ci ratio: 8.760893e-02	ci left: 5.021838e-04	ci right 5.484496e-04	k: 2000	n:3810000
KRTAP5-5   3810000 perm   6069 sec   (628 perm/sec)   p_kst 5.249344e-04   p_cons 4.645669e-05   p_joint 9.212598e-05

Joint ci ratio: 2.089270e-01	ci left: 8.252295e-05	ci right 1.020178e-04	k: 351	n:3820000
Cons ci ratio: 2.938095e-01	ci left: 3.976035e-05	ci right 5.368647e-05	k: 177	n:3820000
KS ci ratio: 8.749968e-02	ci left: 5.021494e-04	ci right 5.483514e-04	k: 2005	n:3820000
KRTAP5-5   3820000 perm   6099 sec   (626 perm/sec)   p_kst 5.248691e-04   p_cons 4.633508e-05   p_joint 9.188482e-05

Joint ci ratio: 2.086309e-01	ci left: 8.255493e-05	ci right 1.020262e-04	k: 352	n:3830000
Cons ci ratio: 2.938096e-01	ci left: 3.965654e-05	ci right 5.354630e-05	k: 177	n:3830000
KS ci ratio: 8.743435e-02	ci left: 5.016045e-04	ci right 5.477201e-04	k: 2008	n:3830000
KRTAP5-5   3830000 perm   6130 sec   (625 perm/sec)   p_kst 5.242820e-04   p_cons 4.621410e-05   p_joint 9.190601e-05

Joint ci ratio: 2.086309e-01	ci left: 8.233994e-05	ci right 1.017605e-04	k: 352	n:3840000
Cons ci ratio: 2.938096e-01	ci left: 3.955326e-05	ci right 5.340686e-05	k: 177	n:3840000
KS ci ratio: 8.730407e-02	ci left: 5.018266e-04	ci right 5.478904e-04	k: 2014	n:3840000
KRTAP5-5   3840000 perm   6161 sec   (623 perm/sec)   p_kst 5.244792e-04   p_cons 4.609375e-05   p_joint 9.166667e-05

Joint ci ratio: 2.080424e-01	ci left: 8.261845e-05	ci right 1.020427e-04	k: 354	n:3850000
Cons ci ratio: 2.938096e-01	ci left: 3.945053e-05	ci right 5.326814e-05	k: 177	n:3850000
KS ci ratio: 8.713125e-02	ci left: 5.025557e-04	ci right 5.485905e-04	k: 2022	n:3850000
KRTAP5-5   3850000 perm   6191 sec   (622 perm/sec)   p_kst 5.251948e-04   p_cons 4.597403e-05   p_joint 9.194805e-05

Joint ci ratio: 2.077500e-01	ci left: 8.264999e-05	ci right 1.020509e-04	k: 355	n:3860000
Cons ci ratio: 2.938096e-01	ci left: 3.934832e-05	ci right 5.313014e-05	k: 177	n:3860000
KS ci ratio: 8.700232e-02	ci left: 5.027743e-04	ci right 5.487575e-04	k: 2028	n:3860000
KRTAP5-5   3860000 perm   6221 sec   (621 perm/sec)   p_kst 5.253886e-04   p_cons 4.585492e-05   p_joint 9.196891e-05

Joint ci ratio: 2.074588e-01	ci left: 8.268139e-05	ci right 1.020590e-04	k: 356	n:3870000
Cons ci ratio: 2.938096e-01	ci left: 3.924665e-05	ci right 5.299285e-05	k: 177	n:3870000
KS ci ratio: 8.689532e-02	ci left: 5.027391e-04	ci right 5.486596e-04	k: 2033	n:3870000
KRTAP5-5   3870000 perm   6251 sec   (619 perm/sec)   p_kst 5.253230e-04   p_cons 4.573643e-05   p_joint 9.198966e-05

Joint ci ratio: 2.071689e-01	ci left: 8.271265e-05	ci right 1.020670e-04	k: 357	n:3880000
Cons ci ratio: 2.929878e-01	ci left: 3.938426e-05	ci right 5.313292e-05	k: 178	n:3880000
KS ci ratio: 8.672490e-02	ci left: 5.034605e-04	ci right 5.493521e-04	k: 2041	n:3880000
KRTAP5-5   3880000 perm   6282 sec   (618 perm/sec)   p_kst 5.260309e-04   p_cons 4.587629e-05   p_joint 9.201031e-05

Joint ci ratio: 2.063062e-01	ci left: 8.323131e-05	ci right 1.026157e-04	k: 360	n:3890000
Cons ci ratio: 2.921728e-01	ci left: 3.952122e-05	ci right 5.327221e-05	k: 179	n:3890000
KS ci ratio: 8.657662e-02	ci left: 5.039267e-04	ci right 5.497784e-04	k: 2048	n:3890000
KRTAP5-5   3890000 perm   6312 sec   (616 perm/sec)   p_kst 5.264781e-04   p_cons 4.601542e-05   p_joint 9.254499e-05

Joint ci ratio: 2.060210e-01	ci left: 8.326107e-05	ci right 1.026223e-04	k: 361	n:3900000
Cons ci ratio: 2.913645e-01	ci left: 3.965753e-05	ci right 5.341074e-05	k: 180	n:3900000
KS ci ratio: 8.645013e-02	ci left: 5.041398e-04	ci right 5.499404e-04	k: 2054	n:3900000
KRTAP5-5   3900000 perm   6343 sec   (615 perm/sec)   p_kst 5.266667e-04   p_cons 4.615385e-05   p_joint 9.256410e-05

Joint ci ratio: 2.060211e-01	ci left: 8.304812e-05	ci right 1.023598e-04	k: 361	n:3910000
Cons ci ratio: 2.913645e-01	ci left: 3.955611e-05	ci right 5.327414e-05	k: 180	n:3910000
KS ci ratio: 8.636613e-02	ci left: 5.038513e-04	ci right 5.495790e-04	k: 2058	n:3910000
KRTAP5-5   3910000 perm   6374 sec   (613 perm/sec)   p_kst 5.263427e-04   p_cons 4.603581e-05   p_joint 9.232737e-05

Joint ci ratio: 2.057371e-01	ci left: 8.307822e-05	ci right 1.023669e-04	k: 362	n:3920000
Cons ci ratio: 2.913645e-01	ci left: 3.945520e-05	ci right 5.313823e-05	k: 180	n:3920000
KS ci ratio: 8.628237e-02	ci left: 5.035644e-04	ci right 5.492195e-04	k: 2062	n:3920000
KRTAP5-5   3920000 perm   6405 sec   (612 perm/sec)   p_kst 5.260204e-04   p_cons 4.591837e-05   p_joint 9.234694e-05

Joint ci ratio: 2.054543e-01	ci left: 8.310817e-05	ci right 1.023740e-04	k: 363	n:3930000
Cons ci ratio: 2.913646e-01	ci left: 3.935480e-05	ci right 5.300302e-05	k: 180	n:3930000
KS ci ratio: 8.621973e-02	ci left: 5.030299e-04	ci right 5.486018e-04	k: 2065	n:3930000
KRTAP5-5   3930000 perm   6436 sec   (611 perm/sec)   p_kst 5.254453e-04   p_cons 4.580153e-05   p_joint 9.236641e-05

Joint ci ratio: 2.046128e-01	ci left: 8.361957e-05	ci right 1.029146e-04	k: 366	n:3940000
Cons ci ratio: 2.897680e-01	ci left: 3.972554e-05	ci right 5.341300e-05	k: 182	n:3940000
KS ci ratio: 8.607402e-02	ci left: 5.034916e-04	ci right 5.490243e-04	k: 2072	n:3940000
KRTAP5-5   3940000 perm   6467 sec   (609 perm/sec)   p_kst 5.258883e-04   p_cons 4.619289e-05   p_joint 9.289340e-05

Joint ci ratio: 2.046128e-01	ci left: 8.340788e-05	ci right 1.026540e-04	k: 366	n:3950000
Cons ci ratio: 2.897680e-01	ci left: 3.962497e-05	ci right 5.327778e-05	k: 182	n:3950000
KS ci ratio: 8.597041e-02	ci left: 5.034555e-04	ci right 5.489274e-04	k: 2077	n:3950000
KRTAP5-5   3950000 perm   6499 sec   (608 perm/sec)   p_kst 5.258228e-04   p_cons 4.607595e-05   p_joint 9.265823e-05

Joint ci ratio: 2.046128e-01	ci left: 8.319725e-05	ci right 1.023948e-04	k: 366	n:3960000
Cons ci ratio: 2.897680e-01	ci left: 3.952491e-05	ci right 5.314324e-05	k: 182	n:3960000
KS ci ratio: 8.590844e-02	ci left: 5.029254e-04	ci right 5.483151e-04	k: 2080	n:3960000
KRTAP5-5   3960000 perm   6530 sec   (606 perm/sec)   p_kst 5.252525e-04   p_cons 4.595960e-05   p_joint 9.242424e-05

Joint ci ratio: 2.046129e-01	ci left: 8.298768e-05	ci right 1.021369e-04	k: 366	n:3970000
Cons ci ratio: 2.897680e-01	ci left: 3.942535e-05	ci right 5.300938e-05	k: 182	n:3970000
KS ci ratio: 8.580542e-02	ci left: 5.028910e-04	ci right 5.482205e-04	k: 2085	n:3970000
KRTAP5-5   3970000 perm   6561 sec   (605 perm/sec)   p_kst 5.251889e-04   p_cons 4.584383e-05   p_joint 9.219144e-05

Joint ci ratio: 2.043347e-01	ci left: 8.301756e-05	ci right 1.021444e-04	k: 367	n:3980000
Cons ci ratio: 2.897680e-01	ci left: 3.932629e-05	ci right 5.287619e-05	k: 182	n:3980000
KS ci ratio: 8.568228e-02	ci left: 5.031027e-04	ci right 5.483829e-04	k: 2091	n:3980000
KRTAP5-5   3980000 perm   6592 sec   (604 perm/sec)   p_kst 5.253769e-04   p_cons 4.572864e-05   p_joint 9.221106e-05

Joint ci ratio: 2.040576e-01	ci left: 8.304731e-05	ci right 1.021518e-04	k: 368	n:3990000
Cons ci ratio: 2.897681e-01	ci left: 3.922773e-05	ci right 5.274367e-05	k: 182	n:3990000
KS ci ratio: 8.562093e-02	ci left: 5.025776e-04	ci right 5.477765e-04	k: 2094	n:3990000
KRTAP5-5   3990000 perm   6623 sec   (602 perm/sec)   p_kst 5.248120e-04   p_cons 4.561404e-05   p_joint 9.223058e-05

Joint ci ratio: 2.037816e-01	ci left: 8.307693e-05	ci right 1.021592e-04	k: 369	n:4000000
Cons ci ratio: 2.897681e-01	ci left: 3.912966e-05	ci right 5.261181e-05	k: 182	n:4000000
KS ci ratio: 8.555972e-02	ci left: 5.020551e-04	ci right 5.471731e-04	k: 2097	n:4000000
KRTAP5-5   4000000 perm   6654 sec   (601 perm/sec)   p_kst 5.242500e-04   p_cons 4.550000e-05   p_joint 9.225000e-05

Joint ci ratio: 2.037817e-01	ci left: 8.286975e-05	ci right 1.019044e-04	k: 369	n:4010000
Cons ci ratio: 2.897681e-01	ci left: 3.903208e-05	ci right 5.248061e-05	k: 182	n:4010000
KS ci ratio: 8.551900e-02	ci left: 5.012911e-04	ci right 5.463180e-04	k: 2099	n:4010000
KRTAP5-5   4010000 perm   6686 sec   (600 perm/sec)   p_kst 5.234414e-04   p_cons 4.538653e-05   p_joint 9.201995e-05

Joint ci ratio: 2.037817e-01	ci left: 8.266361e-05	ci right 1.016509e-04	k: 369	n:4020000
Cons ci ratio: 2.897681e-01	ci left: 3.893498e-05	ci right 5.235006e-05	k: 182	n:4020000
KS ci ratio: 8.545800e-02	ci left: 5.007745e-04	ci right 5.457212e-04	k: 2102	n:4020000
KRTAP5-5   4020000 perm   6718 sec   (598 perm/sec)   p_kst 5.228856e-04   p_cons 4.527363e-05   p_joint 9.179104e-05

Joint ci ratio: 2.035069e-01	ci left: 8.269398e-05	ci right 1.016595e-04	k: 370	n:4030000
Cons ci ratio: 2.897681e-01	ci left: 3.883837e-05	ci right 5.222016e-05	k: 182	n:4030000
KS ci ratio: 8.533635e-02	ci left: 5.009889e-04	ci right 5.458877e-04	k: 2108	n:4030000
KRTAP5-5   4030000 perm   6750 sec   (597 perm/sec)   p_kst 5.230769e-04   p_cons 4.516129e-05   p_joint 9.181141e-05

Joint ci ratio: 2.032331e-01	ci left: 8.272421e-05	ci right 1.016679e-04	k: 371	n:4040000
Cons ci ratio: 2.889796e-01	ci left: 3.897180e-05	ci right 5.235634e-05	k: 183	n:4040000
KS ci ratio: 8.521521e-02	ci left: 5.012023e-04	ci right 5.460533e-04	k: 2114	n:4040000
KRTAP5-5   4040000 perm   6782 sec   (596 perm/sec)   p_kst 5.232673e-04   p_cons 4.529703e-05   p_joint 9.183168e-05

Joint ci ratio: 2.029605e-01	ci left: 8.275431e-05	ci right 1.016764e-04	k: 372	n:4050000
Cons ci ratio: 2.889796e-01	ci left: 3.887557e-05	ci right 5.222707e-05	k: 183	n:4050000
KS ci ratio: 8.511466e-02	ci left: 5.011730e-04	ci right 5.459659e-04	k: 2119	n:4050000
KRTAP5-5   4050000 perm   6814 sec   (594 perm/sec)   p_kst 5.232099e-04   p_cons 4.518519e-05   p_joint 9.185185e-05

Joint ci ratio: 2.021492e-01	ci left: 8.325192e-05	ci right 1.022023e-04	k: 375	n:4060000
Cons ci ratio: 2.881975e-01	ci left: 3.900830e-05	ci right 5.236251e-05	k: 184	n:4060000
KS ci ratio: 8.495449e-02	ci left: 5.018672e-04	ci right 5.466334e-04	k: 2127	n:4060000
KRTAP5-5   4060000 perm   6846 sec   (593 perm/sec)   p_kst 5.238916e-04   p_cons 4.532020e-05   p_joint 9.236453e-05

Joint ci ratio: 2.013475e-01	ci left: 8.374724e-05	ci right 1.027254e-04	k: 378	n:4070000
Cons ci ratio: 2.866522e-01	ci left: 3.936843e-05	ci right 5.276058e-05	k: 186	n:4070000
KS ci ratio: 8.477537e-02	ci left: 5.027985e-04	ci right 5.475486e-04	k: 2136	n:4070000
KRTAP5-5   4070000 perm   6878 sec   (592 perm/sec)   p_kst 5.248157e-04   p_cons 4.570025e-05   p_joint 9.287469e-05

Joint ci ratio: 2.008183e-01	ci left: 8.400750e-05	ci right 1.029885e-04	k: 380	n:4080000
Cons ci ratio: 2.858888e-01	ci left: 3.949945e-05	ci right 5.289391e-05	k: 187	n:4080000
KS ci ratio: 8.465660e-02	ci left: 5.030055e-04	ci right 5.477083e-04	k: 2142	n:4080000
KRTAP5-5   4080000 perm   6910 sec   (590 perm/sec)   p_kst 5.250000e-04   p_cons 4.583333e-05   p_joint 9.313725e-05

Joint ci ratio: 2.002932e-01	ci left: 8.426654e-05	ci right 1.032502e-04	k: 382	n:4090000
Cons ci ratio: 2.858888e-01	ci left: 3.940287e-05	ci right 5.276459e-05	k: 187	n:4090000
KS ci ratio: 8.451866e-02	ci left: 5.034510e-04	ci right 5.481168e-04	k: 2149	n:4090000
KRTAP5-5   4090000 perm   6942 sec   (589 perm/sec)   p_kst 5.254279e-04   p_cons 4.572127e-05   p_joint 9.339853e-05

Joint ci ratio: 2.000323e-01	ci left: 8.429269e-05	ci right 1.032545e-04	k: 383	n:4100000
Cons ci ratio: 2.851314e-01	ci left: 3.953320e-05	ci right 5.289722e-05	k: 188	n:4100000
KS ci ratio: 8.444016e-02	ci left: 5.031781e-04	ci right 5.477762e-04	k: 2153	n:4100000
KRTAP5-5   4100000 perm   6974 sec   (588 perm/sec)   p_kst 5.251220e-04   p_cons 4.585366e-05   p_joint 9.341463e-05

Joint ci ratio: 2.000323e-01	ci left: 8.408760e-05	ci right 1.030033e-04	k: 383	n:4110000
Cons ci ratio: 2.851315e-01	ci left: 3.943702e-05	ci right 5.276851e-05	k: 188	n:4110000
KS ci ratio: 8.430327e-02	ci left: 5.036210e-04	ci right 5.481825e-04	k: 2160	n:4110000
KRTAP5-5   4110000 perm   7007 sec   (587 perm/sec)   p_kst 5.255474e-04   p_cons 4.574209e-05   p_joint 9.318735e-05

Joint ci ratio: 2.000323e-01	ci left: 8.388350e-05	ci right 1.027533e-04	k: 383	n:4120000
Cons ci ratio: 2.851315e-01	ci left: 3.934130e-05	ci right 5.264043e-05	k: 188	n:4120000
KS ci ratio: 8.416704e-02	ci left: 5.040619e-04	ci right 5.485867e-04	k: 2167	n:4120000
KRTAP5-5   4120000 perm   7038 sec   (585 perm/sec)   p_kst 5.259709e-04   p_cons 4.563107e-05   p_joint 9.296117e-05

Joint ci ratio: 2.000323e-01	ci left: 8.368039e-05	ci right 1.025045e-04	k: 383	n:4130000
Cons ci ratio: 2.851315e-01	ci left: 3.924604e-05	ci right 5.251298e-05	k: 188	n:4130000
KS ci ratio: 8.408952e-02	ci left: 5.037895e-04	ci right 5.482473e-04	k: 2171	n:4130000
KRTAP5-5   4130000 perm   7071 sec   (584 perm/sec)   p_kst 5.256659e-04   p_cons 4.552058e-05   p_joint 9.273608e-05

Joint ci ratio: 1.997724e-01	ci left: 8.370772e-05	ci right 1.025105e-04	k: 384	n:4140000
Cons ci ratio: 2.851315e-01	ci left: 3.915124e-05	ci right 5.238613e-05	k: 188	n:4140000
KS ci ratio: 8.389656e-02	ci left: 5.049374e-04	ci right 5.493892e-04	k: 2181	n:4140000
KRTAP5-5   4140000 perm   7104 sec   (583 perm/sec)   p_kst 5.268116e-04   p_cons 4.541063e-05   p_joint 9.275362e-05

Joint ci ratio: 1.992555e-01	ci left: 8.396387e-05	ci right 1.027694e-04	k: 386	n:4150000
Cons ci ratio: 2.836347e-01	ci left: 3.950446e-05	ci right 5.277611e-05	k: 190	n:4150000
KS ci ratio: 8.381978e-02	ci left: 5.046643e-04	ci right 5.490495e-04	k: 2185	n:4150000
KRTAP5-5   4150000 perm   7137 sec   (581 perm/sec)   p_kst 5.265060e-04   p_cons 4.578313e-05   p_joint 9.301205e-05

Joint ci ratio: 1.989985e-01	ci left: 8.399044e-05	ci right 1.027748e-04	k: 387	n:4160000
Cons ci ratio: 2.836347e-01	ci left: 3.940950e-05	ci right 5.264924e-05	k: 190	n:4160000
KS ci ratio: 8.372409e-02	ci left: 5.046279e-04	ci right 5.489567e-04	k: 2190	n:4160000
KRTAP5-5   4160000 perm   7170 sec   (580 perm/sec)   p_kst 5.264423e-04   p_cons 4.567308e-05   p_joint 9.302885e-05

Joint ci ratio: 1.989986e-01	ci left: 8.378902e-05	ci right 1.025283e-04	k: 387	n:4170000
Cons ci ratio: 2.836347e-01	ci left: 3.931499e-05	ci right 5.252298e-05	k: 190	n:4170000
KS ci ratio: 8.364778e-02	ci left: 5.043569e-04	ci right 5.486196e-04	k: 2194	n:4170000
KRTAP5-5   4170000 perm   7203 sec   (579 perm/sec)   p_kst 5.261391e-04   p_cons 4.556355e-05   p_joint 9.280576e-05

Joint ci ratio: 1.987426e-01	ci left: 8.381589e-05	ci right 1.025341e-04	k: 388	n:4180000
Cons ci ratio: 2.836347e-01	ci left: 3.922094e-05	ci right 5.239733e-05	k: 190	n:4180000
KS ci ratio: 8.347678e-02	ci left: 5.052585e-04	ci right 5.495052e-04	k: 2203	n:4180000
KRTAP5-5   4180000 perm   7237 sec   (578 perm/sec)   p_kst 5.270335e-04   p_cons 4.545455e-05   p_joint 9.282297e-05

Joint ci ratio: 1.987426e-01	ci left: 8.361585e-05	ci right 1.022894e-04	k: 388	n:4190000
Cons ci ratio: 2.836347e-01	ci left: 3.912733e-05	ci right 5.227228e-05	k: 190	n:4190000
KS ci ratio: 8.342005e-02	ci left: 5.047536e-04	ci right 5.489246e-04	k: 2206	n:4190000
KRTAP5-5   4190000 perm   7270 sec   (576 perm/sec)   p_kst 5.264916e-04   p_cons 4.534606e-05   p_joint 9.260143e-05

Joint ci ratio: 1.987427e-01	ci left: 8.341677e-05	ci right 1.020459e-04	k: 388	n:4200000
Cons ci ratio: 2.836348e-01	ci left: 3.903417e-05	ci right 5.214782e-05	k: 190	n:4200000
KS ci ratio: 8.332572e-02	ci left: 5.047175e-04	ci right 5.488330e-04	k: 2211	n:4200000
KRTAP5-5   4200000 perm   7303 sec   (575 perm/sec)   p_kst 5.264286e-04   p_cons 4.523810e-05   p_joint 9.238095e-05

Joint ci ratio: 1.984877e-01	ci left: 8.344434e-05	ci right 1.020528e-04	k: 389	n:4210000
Cons ci ratio: 2.828951e-01	ci left: 3.916211e-05	ci right 5.227831e-05	k: 191	n:4210000
KS ci ratio: 8.323170e-02	ci left: 5.046816e-04	ci right 5.487417e-04	k: 2216	n:4210000
KRTAP5-5   4210000 perm   7337 sec   (574 perm/sec)   p_kst 5.263658e-04   p_cons 4.536817e-05   p_joint 9.239905e-05

Joint ci ratio: 1.984877e-01	ci left: 8.324661e-05	ci right 1.018110e-04	k: 389	n:4220000
Cons ci ratio: 2.828952e-01	ci left: 3.906931e-05	ci right 5.215443e-05	k: 191	n:4220000
KS ci ratio: 8.315673e-02	ci left: 5.044138e-04	ci right 5.484090e-04	k: 2220	n:4220000
KRTAP5-5   4220000 perm   7371 sec   (572 perm/sec)   p_kst 5.260664e-04   p_cons 4.526066e-05   p_joint 9.218009e-05

Joint ci ratio: 1.984877e-01	ci left: 8.304981e-05	ci right 1.015703e-04	k: 389	n:4230000
Cons ci ratio: 2.828952e-01	ci left: 3.897694e-05	ci right 5.203113e-05	k: 191	n:4230000
KS ci ratio: 8.311935e-02	ci left: 5.036843e-04	ci right 5.475951e-04	k: 2222	n:4230000
KRTAP5-5   4230000 perm   7406 sec   (571 perm/sec)   p_kst 5.252955e-04   p_cons 4.515366e-05   p_joint 9.196217e-05

Joint ci ratio: 1.979807e-01	ci left: 8.330222e-05	ci right 1.018258e-04	k: 391	n:4240000
Cons ci ratio: 2.821613e-01	ci left: 3.910416e-05	ci right 5.216093e-05	k: 192	n:4240000
KS ci ratio: 8.304468e-02	ci left: 5.034202e-04	ci right 5.472666e-04	k: 2226	n:4240000
KRTAP5-5   4240000 perm   7439 sec   (570 perm/sec)   p_kst 5.250000e-04   p_cons 4.528302e-05   p_joint 9.221698e-05

Joint ci ratio: 1.974776e-01	ci left: 8.355351e-05	ci right 1.020801e-04	k: 393	n:4250000
Cons ci ratio: 2.814331e-01	ci left: 3.923082e-05	ci right 5.229008e-05	k: 193	n:4250000
KS ci ratio: 8.295162e-02	ci left: 5.033877e-04	ci right 5.471798e-04	k: 2231	n:4250000
KRTAP5-5   4250000 perm   7473 sec   (569 perm/sec)   p_kst 5.249412e-04   p_cons 4.541176e-05   p_joint 9.247059e-05

Joint ci ratio: 1.974776e-01	ci left: 8.335737e-05	ci right 1.018405e-04	k: 393	n:4260000
Cons ci ratio: 2.814332e-01	ci left: 3.913873e-05	ci right 5.216733e-05	k: 193	n:4260000
KS ci ratio: 8.282183e-02	ci left: 5.038152e-04	ci right 5.475726e-04	k: 2238	n:4260000
KRTAP5-5   4260000 perm   7507 sec   (567 perm/sec)   p_kst 5.253521e-04   p_cons 4.530516e-05   p_joint 9.225352e-05

Joint ci ratio: 1.969783e-01	ci left: 8.360741e-05	ci right 1.020935e-04	k: 395	n:4270000
Cons ci ratio: 2.814332e-01	ci left: 3.904707e-05	ci right 5.204516e-05	k: 193	n:4270000
KS ci ratio: 8.271107e-02	ci left: 5.040113e-04	ci right 5.477245e-04	k: 2244	n:4270000
KRTAP5-5   4270000 perm   7541 sec   (566 perm/sec)   p_kst 5.255269e-04   p_cons 4.519906e-05   p_joint 9.250585e-05

Joint ci ratio: 1.969783e-01	ci left: 8.341207e-05	ci right 1.018549e-04	k: 395	n:4280000
Cons ci ratio: 2.814332e-01	ci left: 3.895583e-05	ci right 5.192356e-05	k: 193	n:4280000
KS ci ratio: 8.265588e-02	ci left: 5.035202e-04	ci right 5.471602e-04	k: 2247	n:4280000
KRTAP5-5   4280000 perm   7575 sec   (565 perm/sec)   p_kst 5.250000e-04   p_cons 4.509346e-05   p_joint 9.228972e-05

Joint ci ratio: 1.967300e-01	ci left: 8.343925e-05	ci right 1.018621e-04	k: 396	n:4290000
Cons ci ratio: 2.814332e-01	ci left: 3.886503e-05	ci right 5.180253e-05	k: 193	n:4290000
KS ci ratio: 8.250918e-02	ci left: 5.041728e-04	ci right 5.477880e-04	k: 2255	n:4290000
KRTAP5-5   4290000 perm   7609 sec   (564 perm/sec)   p_kst 5.256410e-04   p_cons 4.498834e-05   p_joint 9.230769e-05

Joint ci ratio: 1.967301e-01	ci left: 8.324520e-05	ci right 1.016252e-04	k: 396	n:4300000
Cons ci ratio: 2.814332e-01	ci left: 3.877464e-05	ci right 5.168206e-05	k: 193	n:4300000
KS ci ratio: 8.241790e-02	ci left: 5.041391e-04	ci right 5.477009e-04	k: 2260	n:4300000
KRTAP5-5   4300000 perm   7643 sec   (563 perm/sec)   p_kst 5.255814e-04   p_cons 4.488372e-05   p_joint 9.209302e-05

Joint ci ratio: 1.964827e-01	ci left: 8.327266e-05	ci right 1.016328e-04	k: 397	n:4310000
Cons ci ratio: 2.814332e-01	ci left: 3.868468e-05	ci right 5.156215e-05	k: 193	n:4310000
KS ci ratio: 8.234510e-02	ci left: 5.038784e-04	ci right 5.473773e-04	k: 2264	n:4310000
KRTAP5-5   4310000 perm   7677 sec   (561 perm/sec)   p_kst 5.252900e-04   p_cons 4.477958e-05   p_joint 9.211137e-05

Joint ci ratio: 1.962364e-01	ci left: 8.330000e-05	ci right 1.016404e-04	k: 398	n:4320000
Cons ci ratio: 2.814332e-01	ci left: 3.859513e-05	ci right 5.144279e-05	k: 193	n:4320000
KS ci ratio: 8.229064e-02	ci left: 5.033921e-04	ci right 5.468189e-04	k: 2267	n:4320000
KRTAP5-5   4320000 perm   7712 sec   (560 perm/sec)   p_kst 5.247685e-04   p_cons 4.467593e-05   p_joint 9.212963e-05

Joint ci ratio: 1.957464e-01	ci left: 8.354685e-05	ci right 1.018902e-04	k: 400	n:4330000
Cons ci ratio: 2.814333e-01	ci left: 3.850600e-05	ci right 5.132399e-05	k: 193	n:4330000
KS ci ratio: 8.216393e-02	ci left: 5.038129e-04	ci right 5.472059e-04	k: 2274	n:4330000
KRTAP5-5   4330000 perm   7746 sec   (559 perm/sec)   p_kst 5.251732e-04   p_cons 4.457275e-05   p_joint 9.237875e-05

Joint ci ratio: 1.957464e-01	ci left: 8.335434e-05	ci right 1.016554e-04	k: 400	n:4340000
Cons ci ratio: 2.814333e-01	ci left: 3.841727e-05	ci right 5.120573e-05	k: 193	n:4340000
KS ci ratio: 8.205579e-02	ci left: 5.040062e-04	ci right 5.473560e-04	k: 2280	n:4340000
KRTAP5-5   4340000 perm   7780 sec   (558 perm/sec)   p_kst 5.253456e-04   p_cons 4.447005e-05   p_joint 9.216590e-05

Joint ci ratio: 1.957464e-01	ci left: 8.316272e-05	ci right 1.014217e-04	k: 400	n:4350000
Cons ci ratio: 2.814333e-01	ci left: 3.832896e-05	ci right 5.108801e-05	k: 193	n:4350000
KS ci ratio: 8.203785e-02	ci left: 5.030727e-04	ci right 5.463323e-04	k: 2281	n:4350000
KRTAP5-5   4350000 perm   7815 sec   (557 perm/sec)   p_kst 5.243678e-04   p_cons 4.436782e-05   p_joint 9.195402e-05

Joint ci ratio: 1.955028e-01	ci left: 8.319011e-05	ci right 1.014297e-04	k: 401	n:4360000
Cons ci ratio: 2.807107e-01	ci left: 3.845424e-05	ci right 5.121632e-05	k: 194	n:4360000
KS ci ratio: 8.193020e-02	ci left: 5.032668e-04	ci right 5.464836e-04	k: 2287	n:4360000
KRTAP5-5   4360000 perm   7850 sec   (555 perm/sec)   p_kst 5.245413e-04   p_cons 4.449541e-05   p_joint 9.197248e-05

Joint ci ratio: 1.955028e-01	ci left: 8.299974e-05	ci right 1.011976e-04	k: 401	n:4370000
Cons ci ratio: 2.807107e-01	ci left: 3.836624e-05	ci right 5.109912e-05	k: 194	n:4370000
KS ci ratio: 8.187656e-02	ci left: 5.027876e-04	ci right 5.459336e-04	k: 2290	n:4370000
KRTAP5-5   4370000 perm   7885 sec   (554 perm/sec)   p_kst 5.240275e-04   p_cons 4.439359e-05   p_joint 9.176201e-05

Joint ci ratio: 1.950183e-01	ci left: 8.324454e-05	ci right 1.014455e-04	k: 403	n:4380000
Cons ci ratio: 2.799937e-01	ci left: 3.849091e-05	ci right 5.122678e-05	k: 195	n:4380000
KS ci ratio: 8.182303e-02	ci left: 5.023106e-04	ci right 5.453861e-04	k: 2293	n:4380000
KRTAP5-5   4380000 perm   7920 sec   (553 perm/sec)   p_kst 5.235160e-04   p_cons 4.452055e-05   p_joint 9.200913e-05

Joint ci ratio: 1.945373e-01	ci left: 8.348829e-05	ci right 1.016921e-04	k: 405	n:4390000
Cons ci ratio: 2.785760e-01	ci left: 3.882691e-05	ci right 5.159749e-05	k: 197	n:4390000
KS ci ratio: 8.168070e-02	ci left: 5.029514e-04	ci right 5.460034e-04	k: 2301	n:4390000
KRTAP5-5   4390000 perm   7955 sec   (552 perm/sec)   p_kst 5.241458e-04   p_cons 4.487472e-05   p_joint 9.225513e-05

Joint ci ratio: 1.945373e-01	ci left: 8.329854e-05	ci right 1.014610e-04	k: 405	n:4400000
Cons ci ratio: 2.785760e-01	ci left: 3.873867e-05	ci right 5.148022e-05	k: 197	n:4400000
KS ci ratio: 8.157446e-02	ci left: 5.031442e-04	ci right 5.461539e-04	k: 2307	n:4400000
KRTAP5-5   4400000 perm   7991 sec   (551 perm/sec)   p_kst 5.243182e-04   p_cons 4.477273e-05   p_joint 9.204545e-05

Joint ci ratio: 1.945374e-01	ci left: 8.310965e-05	ci right 1.012310e-04	k: 405	n:4410000
Cons ci ratio: 2.785760e-01	ci left: 3.865082e-05	ci right 5.136349e-05	k: 197	n:4410000
KS ci ratio: 8.146862e-02	ci left: 5.033361e-04	ci right 5.463037e-04	k: 2313	n:4410000
KRTAP5-5   4410000 perm   8026 sec   (549 perm/sec)   p_kst 5.244898e-04   p_cons 4.467120e-05   p_joint 9.183673e-05

Joint ci ratio: 1.945374e-01	ci left: 8.292162e-05	ci right 1.010019e-04	k: 405	n:4420000
Cons ci ratio: 2.785760e-01	ci left: 3.856338e-05	ci right 5.124728e-05	k: 197	n:4420000
KS ci ratio: 8.145106e-02	ci left: 5.024189e-04	ci right 5.452986e-04	k: 2314	n:4420000
KRTAP5-5   4420000 perm   8061 sec   (548 perm/sec)   p_kst 5.235294e-04   p_cons 4.457014e-05   p_joint 9.162896e-05

Joint ci ratio: 1.942982e-01	ci left: 8.294919e-05	ci right 1.010106e-04	k: 406	n:4430000
Cons ci ratio: 2.778752e-01	ci left: 3.868631e-05	ci right 5.137304e-05	k: 198	n:4430000
KS ci ratio: 8.138080e-02	ci left: 5.021694e-04	ci right 5.449890e-04	k: 2318	n:4430000
KRTAP5-5   4430000 perm   8096 sec   (547 perm/sec)   p_kst 5.232506e-04   p_cons 4.469526e-05   p_joint 9.164786e-05

Joint ci ratio: 1.938226e-01	ci left: 8.319093e-05	ci right 1.012555e-04	k: 408	n:4440000
Cons ci ratio: 2.771796e-01	ci left: 3.880874e-05	ci right 5.149819e-05	k: 199	n:4440000
KS ci ratio: 8.120585e-02	ci left: 5.032448e-04	ci right 5.460596e-04	k: 2328	n:4440000
KRTAP5-5   4440000 perm   8132 sec   (546 perm/sec)   p_kst 5.243243e-04   p_cons 4.481982e-05   p_joint 9.189189e-05

Joint ci ratio: 1.938226e-01	ci left: 8.300398e-05	ci right 1.010279e-04	k: 408	n:4450000
Cons ci ratio: 2.771796e-01	ci left: 3.872153e-05	ci right 5.138247e-05	k: 199	n:4450000
KS ci ratio: 8.110145e-02	ci left: 5.034349e-04	ci right 5.462081e-04	k: 2334	n:4450000
KRTAP5-5   4450000 perm   8167 sec   (545 perm/sec)   p_kst 5.244944e-04   p_cons 4.471910e-05   p_joint 9.168539e-05

Joint ci ratio: 1.933504e-01	ci left: 8.324457e-05	ci right 1.012715e-04	k: 410	n:4460000
Cons ci ratio: 2.758040e-01	ci left: 3.905205e-05	ci right 5.174670e-05	k: 201	n:4460000
KS ci ratio: 8.101476e-02	ci left: 5.034045e-04	ci right 5.461273e-04	k: 2339	n:4460000
KRTAP5-5   4460000 perm   8202 sec   (544 perm/sec)   p_kst 5.244395e-04   p_cons 4.506726e-05   p_joint 9.192825e-05

Joint ci ratio: 1.928817e-01	ci left: 8.348414e-05	ci right 1.015140e-04	k: 412	n:4470000
Cons ci ratio: 2.751238e-01	ci left: 3.917295e-05	ci right 5.187006e-05	k: 202	n:4470000
KS ci ratio: 8.091108e-02	ci left: 5.035934e-04	ci right 5.462749e-04	k: 2345	n:4470000
KRTAP5-5   4470000 perm   8237 sec   (543 perm/sec)   p_kst 5.246085e-04   p_cons 4.519016e-05   p_joint 9.217002e-05

Joint ci ratio: 1.926486e-01	ci left: 8.351023e-05	ci right 1.015214e-04	k: 413	n:4480000
Cons ci ratio: 2.751238e-01	ci left: 3.908551e-05	ci right 5.175428e-05	k: 202	n:4480000
KS ci ratio: 8.080781e-02	ci left: 5.037815e-04	ci right 5.464219e-04	k: 2351	n:4480000
KRTAP5-5   4480000 perm   8272 sec   (542 perm/sec)   p_kst 5.247768e-04   p_cons 4.508929e-05   p_joint 9.218750e-05

Joint ci ratio: 1.926486e-01	ci left: 8.332424e-05	ci right 1.012953e-04	k: 413	n:4490000
Cons ci ratio: 2.751238e-01	ci left: 3.899846e-05	ci right 5.163901e-05	k: 202	n:4490000
KS ci ratio: 8.073919e-02	ci left: 5.035324e-04	ci right 5.461138e-04	k: 2355	n:4490000
KRTAP5-5   4490000 perm   8308 sec   (540 perm/sec)   p_kst 5.244989e-04   p_cons 4.498886e-05   p_joint 9.198218e-05

Joint ci ratio: 1.924163e-01	ci left: 8.335059e-05	ci right 1.013031e-04	k: 414	n:4500000
Cons ci ratio: 2.751238e-01	ci left: 3.891180e-05	ci right 5.152426e-05	k: 202	n:4500000
KS ci ratio: 8.067075e-02	ci left: 5.032844e-04	ci right 5.458071e-04	k: 2359	n:4500000
KRTAP5-5   4500000 perm   8343 sec   (539 perm/sec)   p_kst 5.242222e-04   p_cons 4.488889e-05   p_joint 9.200000e-05

Joint ci ratio: 1.919543e-01	ci left: 8.358790e-05	ci right 1.015432e-04	k: 416	n:4510000
Cons ci ratio: 2.744487e-01	ci left: 3.903197e-05	ci right 5.164699e-05	k: 203	n:4510000
KS ci ratio: 8.055136e-02	ci left: 5.036892e-04	ci right 5.461802e-04	k: 2366	n:4510000
KRTAP5-5   4510000 perm   8378 sec   (538 perm/sec)   p_kst 5.246120e-04   p_cons 4.501109e-05   p_joint 9.223947e-05

Joint ci ratio: 1.917246e-01	ci left: 8.361358e-05	ci right 1.015504e-04	k: 417	n:4520000
Cons ci ratio: 2.737784e-01	ci left: 3.915165e-05	ci right 5.176913e-05	k: 204	n:4520000
KS ci ratio: 8.038170e-02	ci left: 5.047428e-04	ci right 5.472288e-04	k: 2376	n:4520000
KRTAP5-5   4520000 perm   8413 sec   (537 perm/sec)   p_kst 5.256637e-04   p_cons 4.513274e-05   p_joint 9.225664e-05

Joint ci ratio: 1.914957e-01	ci left: 8.363917e-05	ci right 1.015576e-04	k: 418	n:4530000
Cons ci ratio: 2.731131e-01	ci left: 3.927084e-05	ci right 5.189069e-05	k: 205	n:4530000
KS ci ratio: 8.017951e-02	ci left: 5.062244e-04	ci right 5.487229e-04	k: 2388	n:4530000
KRTAP5-5   4530000 perm   8449 sec   (536 perm/sec)   p_kst 5.271523e-04   p_cons 4.525386e-05   p_joint 9.227373e-05

Joint ci ratio: 1.910402e-01	ci left: 8.387438e-05	ci right 1.017955e-04	k: 420	n:4540000
Cons ci ratio: 2.731131e-01	ci left: 3.918434e-05	ci right 5.177640e-05	k: 205	n:4540000
KS ci ratio: 8.007901e-02	ci left: 5.064045e-04	ci right 5.488623e-04	k: 2394	n:4540000
KRTAP5-5   4540000 perm   8485 sec   (535 perm/sec)   p_kst 5.273128e-04   p_cons 4.515419e-05   p_joint 9.251101e-05

Joint ci ratio: 1.908137e-01	ci left: 8.389931e-05	ci right 1.018020e-04	k: 421	n:4550000
Cons ci ratio: 2.724526e-01	ci left: 3.930297e-05	ci right 5.189738e-05	k: 206	n:4550000
KS ci ratio: 8.006233e-02	ci left: 5.055069e-04	ci right 5.478802e-04	k: 2395	n:4550000
KRTAP5-5   4550000 perm   8521 sec   (534 perm/sec)   p_kst 5.263736e-04   p_cons 4.527473e-05   p_joint 9.252747e-05

Joint ci ratio: 1.908138e-01	ci left: 8.371532e-05	ci right 1.015788e-04	k: 421	n:4560000
Cons ci ratio: 2.724526e-01	ci left: 3.921678e-05	ci right 5.178357e-05	k: 206	n:4560000
KS ci ratio: 7.997893e-02	ci left: 5.054728e-04	ci right 5.477972e-04	k: 2400	n:4560000
KRTAP5-5   4560000 perm   8557 sec   (533 perm/sec)   p_kst 5.263158e-04   p_cons 4.517544e-05   p_joint 9.232456e-05

Joint ci ratio: 1.905881e-01	ci left: 8.374051e-05	ci right 1.015858e-04	k: 422	n:4570000
Cons ci ratio: 2.717969e-01	ci left: 3.933486e-05	ci right 5.190397e-05	k: 207	n:4570000
KS ci ratio: 7.992903e-02	ci left: 5.050101e-04	ci right 5.472681e-04	k: 2403	n:4570000
KRTAP5-5   4570000 perm   8593 sec   (532 perm/sec)   p_kst 5.258206e-04   p_cons 4.529540e-05   p_joint 9.234136e-05

Joint ci ratio: 1.905881e-01	ci left: 8.355767e-05	ci right 1.013640e-04	k: 422	n:4580000
Cons ci ratio: 2.717969e-01	ci left: 3.924898e-05	ci right 5.179064e-05	k: 207	n:4580000
KS ci ratio: 7.981290e-02	ci left: 5.054053e-04	ci right 5.476320e-04	k: 2410	n:4580000
KRTAP5-5   4580000 perm   8627 sec   (531 perm/sec)   p_kst 5.262009e-04   p_cons 4.519651e-05   p_joint 9.213974e-05

Joint ci ratio: 1.901391e-01	ci left: 8.379059e-05	ci right 1.015996e-04	k: 424	n:4590000
Cons ci ratio: 2.717969e-01	ci left: 3.916347e-05	ci right 5.167781e-05	k: 207	n:4590000
KS ci ratio: 7.964785e-02	ci left: 5.064394e-04	ci right 5.486610e-04	k: 2420	n:4590000
KRTAP5-5   4590000 perm   8663 sec   (530 perm/sec)   p_kst 5.272331e-04   p_cons 4.509804e-05   p_joint 9.237473e-05

Joint ci ratio: 1.896933e-01	ci left: 8.402255e-05	ci right 1.018342e-04	k: 426	n:4600000
Cons ci ratio: 2.704995e-01	ci left: 3.948356e-05	ci right 5.202973e-05	k: 209	n:4600000
KS ci ratio: 7.958215e-02	ci left: 5.061907e-04	ci right 5.483551e-04	k: 2424	n:4600000
KRTAP5-5   4600000 perm   8700 sec   (529 perm/sec)   p_kst 5.269565e-04   p_cons 4.543478e-05   p_joint 9.260870e-05

Joint ci ratio: 1.896933e-01	ci left: 8.384029e-05	ci right 1.016133e-04	k: 426	n:4610000
Cons ci ratio: 2.704995e-01	ci left: 3.939791e-05	ci right 5.191687e-05	k: 209	n:4610000
KS ci ratio: 7.950023e-02	ci left: 5.061557e-04	ci right 5.482718e-04	k: 2429	n:4610000
KRTAP5-5   4610000 perm   8736 sec   (528 perm/sec)   p_kst 5.268980e-04   p_cons 4.533623e-05   p_joint 9.240781e-05

Joint ci ratio: 1.896933e-01	ci left: 8.365882e-05	ci right 1.013933e-04	k: 426	n:4620000
Cons ci ratio: 2.704995e-01	ci left: 3.931263e-05	ci right 5.180449e-05	k: 209	n:4620000
KS ci ratio: 7.940226e-02	ci left: 5.063331e-04	ci right 5.484096e-04	k: 2435	n:4620000
KRTAP5-5   4620000 perm   8772 sec   (527 perm/sec)   p_kst 5.270563e-04   p_cons 4.523810e-05   p_joint 9.220779e-05

Joint ci ratio: 1.894716e-01	ci left: 8.368386e-05	ci right 1.014006e-04	k: 427	n:4630000
Cons ci ratio: 2.698578e-01	ci left: 3.942908e-05	ci right 5.192318e-05	k: 210	n:4630000
KS ci ratio: 7.933716e-02	ci left: 5.060863e-04	ci right 5.481062e-04	k: 2439	n:4630000
KRTAP5-5   4630000 perm   8810 sec   (526 perm/sec)   p_kst 5.267819e-04   p_cons 4.535637e-05   p_joint 9.222462e-05

Joint ci ratio: 1.892506e-01	ci left: 8.370881e-05	ci right 1.014077e-04	k: 428	n:4640000
Cons ci ratio: 2.698578e-01	ci left: 3.934410e-05	ci right 5.181128e-05	k: 210	n:4640000
KS ci ratio: 7.922358e-02	ci left: 5.064743e-04	ci right 5.484634e-04	k: 2446	n:4640000
KRTAP5-5   4640000 perm   8846 sec   (525 perm/sec)   p_kst 5.271552e-04   p_cons 4.525862e-05   p_joint 9.224138e-05

Joint ci ratio: 1.890304e-01	ci left: 8.373366e-05	ci right 1.014149e-04	k: 429	n:4650000
Cons ci ratio: 2.692205e-01	ci left: 3.946001e-05	ci right 5.192941e-05	k: 211	n:4650000
KS ci ratio: 7.911050e-02	ci left: 5.068607e-04	ci right 5.488191e-04	k: 2453	n:4650000
KRTAP5-5   4650000 perm   8882 sec   (524 perm/sec)   p_kst 5.275269e-04   p_cons 4.537634e-05   p_joint 9.225806e-05

Joint ci ratio: 1.890304e-01	ci left: 8.355397e-05	ci right 1.011973e-04	k: 429	n:4660000
Cons ci ratio: 2.692206e-01	ci left: 3.937533e-05	ci right 5.181797e-05	k: 211	n:4660000
KS ci ratio: 7.904611e-02	ci left: 5.066144e-04	ci right 5.485167e-04	k: 2457	n:4660000
KRTAP5-5   4660000 perm   8919 sec   (522 perm/sec)   p_kst 5.272532e-04   p_cons 4.527897e-05   p_joint 9.206009e-05

Joint ci ratio: 1.888110e-01	ci left: 8.357906e-05	ci right 1.012048e-04	k: 430	n:4670000
Cons ci ratio: 2.685878e-01	ci left: 3.949072e-05	ci right 5.193555e-05	k: 212	n:4670000
KS ci ratio: 7.901400e-02	ci left: 5.059493e-04	ci right 5.477789e-04	k: 2459	n:4670000
KRTAP5-5   4670000 perm   8955 sec   (522 perm/sec)   p_kst 5.265525e-04   p_cons 4.539615e-05   p_joint 9.207709e-05

Joint ci ratio: 1.877252e-01	ci left: 8.441850e-05	ci right 1.021072e-04	k: 435	n:4680000
Cons ci ratio: 2.667160e-01	ci left: 4.000435e-05	ci right 5.250851e-05	k: 215	n:4680000
KS ci ratio: 7.886983e-02	ci left: 5.067534e-04	ci right 5.485695e-04	k: 2468	n:4680000
KRTAP5-5   4680000 perm   8991 sec   (521 perm/sec)   p_kst 5.273504e-04   p_cons 4.594017e-05   p_joint 9.294872e-05

Joint ci ratio: 1.875103e-01	ci left: 8.444171e-05	ci right 1.021127e-04	k: 436	n:4690000
Cons ci ratio: 2.667160e-01	ci left: 3.991906e-05	ci right 5.239655e-05	k: 215	n:4690000
KS ci ratio: 7.877416e-02	ci left: 5.069270e-04	ci right 5.487043e-04	k: 2474	n:4690000
KRTAP5-5   4690000 perm   9028 sec   (519 perm/sec)   p_kst 5.275053e-04   p_cons 4.584222e-05   p_joint 9.296375e-05

Joint ci ratio: 1.872961e-01	ci left: 8.446483e-05	ci right 1.021182e-04	k: 437	n:4700000
Cons ci ratio: 2.661008e-01	ci left: 4.003268e-05	ci right 5.251201e-05	k: 216	n:4700000
KS ci ratio: 7.866299e-02	ci left: 5.073085e-04	ci right 5.490556e-04	k: 2481	n:4700000
KRTAP5-5   4700000 perm   9065 sec   (518 perm/sec)   p_kst 5.278723e-04   p_cons 4.595745e-05   p_joint 9.297872e-05

Joint ci ratio: 1.506470e-01	ci left: 1.329082e-04	ci right 1.547629e-04	k: 676	n:4710000
Cons ci ratio: 2.642801e-01	ci left: 4.054229e-05	ci right 5.307970e-05	k: 219	n:4710000
KS ci ratio: 7.859969e-02	ci left: 5.070639e-04	ci right 5.487558e-04	k: 2485	n:4710000
KRTAP5-5   4710000 perm   9102 sec   (517 perm/sec)   p_kst 5.276008e-04   p_cons 4.649682e-05   p_joint 1.435244e-04

Joint ci ratio: 1.864466e-01	ci left: 8.491475e-05	ci right 1.025726e-04	k: 441	n:4720000
Cons ci ratio: 2.636815e-01	ci left: 4.065424e-05	ci right 5.319310e-05	k: 220	n:4720000
KS ci ratio: 7.842632e-02	ci left: 5.082744e-04	ci right 5.499694e-04	k: 2496	n:4720000
KRTAP5-5   4720000 perm   9138 sec   (517 perm/sec)   p_kst 5.288136e-04   p_cons 4.661017e-05   p_joint 9.343220e-05

Joint ci ratio: 1.503143e-01	ci left: 1.329566e-04	ci right 1.547666e-04	k: 679	n:4730000
Cons ci ratio: 2.630870e-01	ci left: 4.076575e-05	ci right 5.330598e-05	k: 221	n:4730000
KS ci ratio: 7.831661e-02	ci left: 5.086507e-04	ci right 5.503156e-04	k: 2503	n:4730000
KRTAP5-5   4730000 perm   9175 sec   (516 perm/sec)   p_kst 5.291755e-04   p_cons 4.672304e-05   p_joint 1.435518e-04

Joint ci ratio: 1.502039e-01	ci left: 1.328792e-04	ci right 1.546590e-04	k: 680	n:4740000
Cons ci ratio: 2.624964e-01	ci left: 4.087682e-05	ci right 5.341836e-05	k: 222	n:4740000
KS ci ratio: 7.826975e-02	ci left: 5.081982e-04	ci right 5.497999e-04	k: 2506	n:4740000
KRTAP5-5   4740000 perm   9212 sec   (515 perm/sec)   p_kst 5.286920e-04   p_cons 4.683544e-05   p_joint 1.434599e-04

Joint ci ratio: 1.500938e-01	ci left: 1.328020e-04	ci right 1.545518e-04	k: 681	n:4750000
Cons ci ratio: 2.624964e-01	ci left: 4.079076e-05	ci right 5.330590e-05	k: 222	n:4750000
KS ci ratio: 7.819182e-02	ci left: 5.081603e-04	ci right 5.497156e-04	k: 2511	n:4750000
KRTAP5-5   4750000 perm   9249 sec   (514 perm/sec)   p_kst 5.286316e-04   p_cons 4.673684e-05   p_joint 1.433684e-04

Joint ci ratio: 1.499839e-01	ci left: 1.327252e-04	ci right 1.544451e-04	k: 682	n:4760000
Cons ci ratio: 2.624964e-01	ci left: 4.070507e-05	ci right 5.319391e-05	k: 222	n:4760000
KS ci ratio: 7.806759e-02	ci left: 5.087406e-04	ci right 5.502743e-04	k: 2519	n:4760000
KRTAP5-5   4760000 perm   9287 sec   (513 perm/sec)   p_kst 5.292017e-04   p_cons 4.663866e-05   p_joint 1.432773e-04

Joint ci ratio: 1.497647e-01	ci left: 1.328506e-04	ci right 1.545563e-04	k: 684	n:4770000
Cons ci ratio: 2.619098e-01	ci left: 4.081560e-05	ci right 5.330578e-05	k: 223	n:4770000
KS ci ratio: 7.794394e-02	ci left: 5.093185e-04	ci right 5.508305e-04	k: 2527	n:4770000
KRTAP5-5   4770000 perm   9323 sec   (512 perm/sec)   p_kst 5.297694e-04   p_cons 4.675052e-05   p_joint 1.433962e-04

Joint ci ratio: 1.496555e-01	ci left: 1.327740e-04	ci right 1.544500e-04	k: 685	n:4780000
Cons ci ratio: 2.619099e-01	ci left: 4.073021e-05	ci right 5.319427e-05	k: 223	n:4780000
KS ci ratio: 7.785161e-02	ci left: 5.094837e-04	ci right 5.509578e-04	k: 2533	n:4780000
KRTAP5-5   4780000 perm   9362 sec   (511 perm/sec)   p_kst 5.299163e-04   p_cons 4.665272e-05   p_joint 1.433054e-04

Joint ci ratio: 1.496556e-01	ci left: 1.324968e-04	ci right 1.541276e-04	k: 685	n:4790000
Cons ci ratio: 2.619099e-01	ci left: 4.064518e-05	ci right 5.308321e-05	k: 223	n:4790000
KS ci ratio: 7.783628e-02	ci left: 5.086248e-04	ci right 5.500204e-04	k: 2534	n:4790000
KRTAP5-5   4790000 perm   9401 sec   (510 perm/sec)   p_kst 5.290188e-04   p_cons 4.655532e-05   p_joint 1.430063e-04

Joint ci ratio: 1.496556e-01	ci left: 1.322208e-04	ci right 1.538065e-04	k: 685	n:4800000
Cons ci ratio: 2.619099e-01	ci left: 4.056050e-05	ci right 5.297262e-05	k: 223	n:4800000
KS ci ratio: 7.777496e-02	ci left: 5.083823e-04	ci right 5.497241e-04	k: 2538	n:4800000
KRTAP5-5   4800000 perm   9439 sec   (509 perm/sec)   p_kst 5.287500e-04   p_cons 4.645833e-05   p_joint 1.427083e-04

Joint ci ratio: 1.495466e-01	ci left: 1.321460e-04	ci right 1.537024e-04	k: 686	n:4810000
Cons ci ratio: 2.619099e-01	ci left: 4.047617e-05	ci right 5.286249e-05	k: 223	n:4810000
KS ci ratio: 7.772907e-02	ci left: 5.079369e-04	ci right 5.492170e-04	k: 2541	n:4810000
KRTAP5-5   4810000 perm   9477 sec   (508 perm/sec)   p_kst 5.282744e-04   p_cons 4.636175e-05   p_joint 1.426195e-04

Joint ci ratio: 1.851940e-01	ci left: 8.433994e-05	ci right 1.017472e-04	k: 447	n:4820000
Cons ci ratio: 2.619099e-01	ci left: 4.039220e-05	ci right 5.275282e-05	k: 223	n:4820000
KS ci ratio: 7.763749e-02	ci left: 5.081038e-04	ci right 5.493466e-04	k: 2547	n:4820000
KRTAP5-5   4820000 perm   9515 sec   (507 perm/sec)   p_kst 5.284232e-04   p_cons 4.626556e-05   p_joint 9.273859e-05

Joint ci ratio: 1.851940e-01	ci left: 8.416532e-05	ci right 1.015365e-04	k: 447	n:4830000
Cons ci ratio: 2.619099e-01	ci left: 4.030857e-05	ci right 5.264360e-05	k: 223	n:4830000
KS ci ratio: 7.757663e-02	ci left: 5.078639e-04	ci right 5.490534e-04	k: 2551	n:4830000
KRTAP5-5   4830000 perm   9554 sec   (506 perm/sec)   p_kst 5.281573e-04   p_cons 4.616977e-05   p_joint 9.254658e-05

Joint ci ratio: 1.851940e-01	ci left: 8.399142e-05	ci right 1.013267e-04	k: 447	n:4840000
Cons ci ratio: 2.619099e-01	ci left: 4.022529e-05	ci right 5.253484e-05	k: 223	n:4840000
KS ci ratio: 7.754628e-02	ci left: 5.072198e-04	ci right 5.483403e-04	k: 2553	n:4840000
KRTAP5-5   4840000 perm   9594 sec   (504 perm/sec)   p_kst 5.274793e-04   p_cons 4.607438e-05   p_joint 9.235537e-05

Joint ci ratio: 1.851940e-01	ci left: 8.381825e-05	ci right 1.011178e-04	k: 447	n:4850000
Cons ci ratio: 2.619099e-01	ci left: 4.014235e-05	ci right 5.242652e-05	k: 223	n:4850000
KS ci ratio: 7.747049e-02	ci left: 5.071849e-04	ci right 5.482606e-04	k: 2558	n:4850000
KRTAP5-5   4850000 perm   9633 sec   (503 perm/sec)   p_kst 5.274227e-04   p_cons 4.597938e-05   p_joint 9.216495e-05

Joint ci ratio: 1.845770e-01	ci left: 8.423450e-05	ci right 1.015556e-04	k: 450	n:4860000
Cons ci ratio: 2.607484e-01	ci left: 4.044432e-05	ci right 5.275706e-05	k: 225	n:4860000
KS ci ratio: 7.741002e-02	ci left: 5.069484e-04	ci right 5.479715e-04	k: 2562	n:4860000
KRTAP5-5   4860000 perm   9673 sec   (502 perm/sec)   p_kst 5.271605e-04   p_cons 4.629630e-05   p_joint 9.259259e-05

Joint ci ratio: 1.845770e-01	ci left: 8.406153e-05	ci right 1.013470e-04	k: 450	n:4870000
Cons ci ratio: 2.607484e-01	ci left: 4.036127e-05	ci right 5.264873e-05	k: 225	n:4870000
KS ci ratio: 7.734969e-02	ci left: 5.067129e-04	ci right 5.476835e-04	k: 2566	n:4870000
KRTAP5-5   4870000 perm   9711 sec   (501 perm/sec)   p_kst 5.268994e-04   p_cons 4.620123e-05   p_joint 9.240246e-05

Joint ci ratio: 1.843727e-01	ci left: 8.408473e-05	ci right 1.013537e-04	k: 451	n:4880000
Cons ci ratio: 2.601735e-01	ci left: 4.047011e-05	ci right 5.275911e-05	k: 226	n:4880000
KS ci ratio: 7.727447e-02	ci left: 5.066793e-04	ci right 5.476056e-04	k: 2571	n:4880000
KRTAP5-5   4880000 perm   9751 sec   (500 perm/sec)   p_kst 5.268443e-04   p_cons 4.631148e-05   p_joint 9.241803e-05

Joint ci ratio: 1.841691e-01	ci left: 8.410784e-05	ci right 1.013604e-04	k: 452	n:4890000
Cons ci ratio: 2.596023e-01	ci left: 4.057852e-05	ci right 5.286901e-05	k: 227	n:4890000
KS ci ratio: 7.716952e-02	ci left: 5.070470e-04	ci right 5.479449e-04	k: 2578	n:4890000
KRTAP5-5   4890000 perm   9791 sec   (499 perm/sec)   p_kst 5.271984e-04   p_cons 4.642127e-05   p_joint 9.243354e-05

Joint ci ratio: 1.841691e-01	ci left: 8.393619e-05	ci right 1.011535e-04	k: 452	n:4900000
Cons ci ratio: 2.596023e-01	ci left: 4.049571e-05	ci right 5.276111e-05	k: 227	n:4900000
KS ci ratio: 7.712469e-02	ci left: 5.066127e-04	ci right 5.474507e-04	k: 2581	n:4900000
KRTAP5-5   4900000 perm   9829 sec   (499 perm/sec)   p_kst 5.267347e-04   p_cons 4.632653e-05   p_joint 9.224490e-05

Joint ci ratio: 1.839662e-01	ci left: 8.395953e-05	ci right 1.011605e-04	k: 453	n:4910000
Cons ci ratio: 2.590348e-01	ci left: 4.060366e-05	ci right 5.287053e-05	k: 228	n:4910000
KS ci ratio: 7.703523e-02	ci left: 5.067793e-04	ci right 5.475813e-04	k: 2587	n:4910000
KRTAP5-5   4910000 perm   9869 sec   (498 perm/sec)   p_kst 5.268839e-04   p_cons 4.643585e-05   p_joint 9.226069e-05

Joint ci ratio: 1.839662e-01	ci left: 8.378888e-05	ci right 1.009549e-04	k: 453	n:4920000
Cons ci ratio: 2.590348e-01	ci left: 4.052114e-05	ci right 5.276307e-05	k: 228	n:4920000
KS ci ratio: 7.702039e-02	ci left: 5.059486e-04	ci right 5.466755e-04	k: 2588	n:4920000
KRTAP5-5   4920000 perm   9910 sec   (496 perm/sec)   p_kst 5.260163e-04   p_cons 4.634146e-05   p_joint 9.207317e-05

Joint ci ratio: 1.839662e-01	ci left: 8.361892e-05	ci right 1.007501e-04	k: 453	n:4930000
Cons ci ratio: 2.590348e-01	ci left: 4.043894e-05	ci right 5.265605e-05	k: 228	n:4930000
KS ci ratio: 7.696097e-02	ci left: 5.057181e-04	ci right 5.463936e-04	k: 2592	n:4930000
KRTAP5-5   4930000 perm   9953 sec   (495 perm/sec)   p_kst 5.257606e-04   p_cons 4.624746e-05   p_joint 9.188641e-05

Joint ci ratio: 1.835623e-01	ci left: 8.383588e-05	ci right 1.009697e-04	k: 455	n:4940000
Cons ci ratio: 2.590349e-01	ci left: 4.035708e-05	ci right 5.254946e-05	k: 228	n:4940000
KS ci ratio: 7.682772e-02	ci left: 5.064812e-04	ci right 5.471444e-04	k: 2601	n:4940000
KRTAP5-5   4940000 perm   9993 sec   (494 perm/sec)   p_kst 5.265182e-04   p_cons 4.615385e-05   p_joint 9.210526e-05

Joint ci ratio: 1.833614e-01	ci left: 8.385926e-05	ci right 1.009770e-04	k: 456	n:4950000
Cons ci ratio: 2.590349e-01	ci left: 4.027555e-05	ci right 5.244329e-05	k: 228	n:4950000
KS ci ratio: 7.673929e-02	ci left: 5.066469e-04	ci right 5.472744e-04	k: 2607	n:4950000
KRTAP5-5   4950000 perm   10033 sec   (493 perm/sec)   p_kst 5.266667e-04   p_cons 4.606061e-05   p_joint 9.212121e-05

Joint ci ratio: 1.833614e-01	ci left: 8.369019e-05	ci right 1.007734e-04	k: 456	n:4960000
Cons ci ratio: 2.590349e-01	ci left: 4.019435e-05	ci right 5.233756e-05	k: 228	n:4960000
KS ci ratio: 7.669521e-02	ci left: 5.062186e-04	ci right 5.467875e-04	k: 2610	n:4960000
KRTAP5-5   4960000 perm   10073 sec   (492 perm/sec)   p_kst 5.262097e-04   p_cons 4.596774e-05   p_joint 9.193548e-05

Joint ci ratio: 1.825641e-01	ci left: 8.428977e-05	ci right 1.014123e-04	k: 460	n:4970000
Cons ci ratio: 2.579110e-01	ci left: 4.048982e-05	ci right 5.266068e-05	k: 230	n:4970000
KS ci ratio: 7.659260e-02	ci left: 5.065815e-04	ci right 5.471228e-04	k: 2617	n:4970000
KRTAP5-5   4970000 perm   10113 sec   (491 perm/sec)   p_kst 5.265594e-04   p_cons 4.627767e-05   p_joint 9.255533e-05

Joint ci ratio: 1.468977e-01	ci left: 1.324689e-04	ci right 1.536616e-04	k: 711	n:4980000
Cons ci ratio: 2.573546e-01	ci left: 4.059636e-05	ci right 5.276868e-05	k: 231	n:4980000
KS ci ratio: 7.654877e-02	ci left: 5.061552e-04	ci right 5.466381e-04	k: 2620	n:4980000
KRTAP5-5   4980000 perm   10158 sec   (490 perm/sec)   p_kst 5.261044e-04   p_cons 4.638554e-05   p_joint 1.427711e-04

Joint ci ratio: 1.465892e-01	ci left: 1.327826e-04	ci right 1.539769e-04	k: 714	n:4990000
Cons ci ratio: 2.557066e-01	ci left: 4.107755e-05	ci right 5.330270e-05	k: 234	n:4990000
KS ci ratio: 7.643219e-02	ci left: 5.067134e-04	ci right 5.471765e-04	k: 2628	n:4990000
KRTAP5-5   4990000 perm   10201 sec   (489 perm/sec)   p_kst 5.266533e-04   p_cons 4.689379e-05   p_joint 1.430862e-04

Joint ci ratio: 1.815820e-01	ci left: 8.473846e-05	ci right 1.018493e-04	k: 465	n:5000000
Cons ci ratio: 2.557066e-01	ci left: 4.099540e-05	ci right 5.319610e-05	k: 234	n:5000000
KS ci ratio: 7.634511e-02	ci left: 5.068770e-04	ci right 5.473050e-04	k: 2634	n:5000000
KRTAP5-5   5000000 perm   10243 sec   (488 perm/sec)   p_kst 5.268000e-04   p_cons 4.680000e-05   p_joint 9.300000e-05

Outputting figure to mutsig2_images.part000000000094/KRTAP5-5.4_718_5000000_0.0005268_4.68e-05_9.3e-05.png
                gene_name: KRTAP5-5
               theta_stop: 0.26 
                    nperm: 5000000 
                     p_ks: 0.00053 
        ci_ks_bounds_left: 0.00051 
       ci_ks_bounds_right: 0.00055 
                   p_cons: 4.68e-05 
      ci_cons_bounds_left: 4.10e-05 
     ci_cons_bounds_right: 5.32e-05 
                  p_joint: 9.30e-05 
     ci_joint_bounds_left: 8.47e-05 
    ci_joint_bounds_right: 0.00010 

Current progress: 26 percent done.
KSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.605879e-02	ci left: 5.317732e-01	ci right 5.514025e-01	k: 5416	n:10000
Cons ci ratio: 6.927536e-03	ci left: 9.662559e-01	ci right 9.730668e-01	k: 9698	n:10000
KS ci ratio: 5.018909e-02	ci left: 3.692789e-01	ci right 3.883917e-01	k: 3788	n:10000
KSR1   10000 perm   2 sec   (5600 perm/sec)   p_kst 3.788000e-01   p_cons 9.698000e-01   p_joint 5.416000e-01

Outputting figure to mutsig2_images.part000000000094/KSR1.4_2361_10000_0.3788_0.9698_0.5416.png
                gene_name: KSR1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 30 percent done.
L1CAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.820443e-02	ci left: 2.397579e-01	ci right 2.567890e-01	k: 2482	n:10000
Cons ci ratio: 7.871795e-02	ci left: 1.908194e-01	ci right 2.065565e-01	k: 1986	n:10000
KS ci ratio: 3.378697e-02	ci left: 5.639369e-01	ci right 5.834201e-01	k: 5737	n:10000
L1CAM   10000 perm   3 sec   (3153 perm/sec)   p_kst 5.737000e-01   p_cons 1.986000e-01   p_joint 2.482000e-01

Outputting figure to mutsig2_images.part000000000094/L1CAM.4_3886_10000_0.5737_0.1986_0.2482.png
                gene_name: L1CAM
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 35 percent done.
L3MBTL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.150889e-02	ci left: 7.602067e-01	ci right 7.768366e-01	k: 7686	n:10000
KS ci ratio: 1.245212e-02	ci left: 9.025767e-01	ci right 9.139842e-01	k: 9084	n:10000
L3MBTL2   10000 perm   3 sec   (3163 perm/sec)   p_kst 9.084000e-01   p_cons 7.686000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/L3MBTL2.4_2186_10000_0.9084_0.7686_1.png
                gene_name: L3MBTL2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
LACE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.402247e-01	ci left: 1.087258e-02	ci right 1.541759e-02	k: 130	n:10000
Cons ci ratio: 5.962295e-02	ci left: 2.927127e-01	ci right 3.108030e-01	k: 3017	n:10000
KS ci ratio: 5.421642e-01	ci left: 3.799572e-03	ci right 6.700171e-03	k: 51	n:10000
LACE1   10000 perm   2 sec   (5228 perm/sec)   p_kst 5.100000e-03   p_cons 3.017000e-01   p_joint 1.300000e-02

Joint ci ratio: 2.373881e-01	ci left: 1.185253e-02	ci right 1.509121e-02	k: 268	n:20000
Cons ci ratio: 4.257878e-02	ci left: 2.912684e-01	ci right 3.039905e-01	k: 5952	n:20000
KS ci ratio: 3.833774e-01	ci left: 4.205484e-03	ci right 6.242447e-03	k: 103	n:20000
LACE1   20000 perm   5 sec   (4288 perm/sec)   p_kst 5.150000e-03   p_cons 2.976000e-01   p_joint 1.340000e-02

Joint ci ratio: 1.990167e-01	ci left: 1.149527e-02	ci right 1.406704e-02	k: 382	n:30000
Cons ci ratio: 3.483628e-02	ci left: 2.916004e-01	ci right 3.019723e-01	k: 8903	n:30000
KS ci ratio: 3.061978e-01	ci left: 4.602231e-03	ci right 6.295715e-03	k: 162	n:30000
LACE1   30000 perm   8 sec   (3799 perm/sec)   p_kst 5.400000e-03   p_cons 2.967667e-01   p_joint 1.273333e-02

Joint ci ratio: 1.752745e-01	ci left: 1.126678e-02	ci right 1.345486e-02	k: 493	n:40000
Cons ci ratio: 3.006466e-02	ci left: 2.937441e-01	ci right 3.027352e-01	k: 11929	n:40000
KS ci ratio: 2.717496e-01	ci left: 4.472165e-03	ci right 5.901120e-03	k: 206	n:40000
LACE1   40000 perm   12 sec   (3432 perm/sec)   p_kst 5.150000e-03   p_cons 2.982250e-01   p_joint 1.232500e-02

Joint ci ratio: 1.653165e-01	ci left: 1.020014e-02	ci right 1.205728e-02	k: 555	n:50000
Cons ci ratio: 2.682208e-02	ci left: 2.952877e-01	ci right 3.033356e-01	k: 14965	n:50000
KS ci ratio: 2.443696e-01	ci left: 4.494511e-03	ci right 5.763990e-03	k: 255	n:50000
LACE1   50000 perm   15 sec   (3283 perm/sec)   p_kst 5.100000e-03   p_cons 2.993000e-01   p_joint 1.110000e-02

Joint ci ratio: 1.375776e-01	ci left: 1.243084e-02	ci right 1.428334e-02	k: 800	n:60000
Cons ci ratio: 2.442995e-02	ci left: 2.965838e-01	ci right 3.039356e-01	k: 18015	n:60000
KS ci ratio: 2.227869e-01	ci left: 4.561489e-03	ci right 5.720505e-03	k: 307	n:60000
LACE1   60000 perm   18 sec   (3423 perm/sec)   p_kst 5.116667e-03   p_cons 3.002500e-01   p_joint 1.333333e-02

Joint ci ratio: 1.158235e-01	ci left: 1.516671e-02	ci right 1.704514e-02	k: 1126	n:70000
Cons ci ratio: 2.264212e-02	ci left: 2.964071e-01	ci right 3.032095e-01	k: 20986	n:70000
KS ci ratio: 2.066465e-01	ci left: 4.585774e-03	ci right 5.655881e-03	k: 357	n:70000
LACE1   70000 perm   20 sec   (3519 perm/sec)   p_kst 5.100000e-03   p_cons 2.998000e-01   p_joint 1.608571e-02

Joint ci ratio: 1.135636e-01	ci left: 1.384097e-02	ci right 1.551949e-02	k: 1173	n:80000
Cons ci ratio: 2.118742e-02	ci left: 2.964766e-01	ci right 3.028379e-01	k: 23972	n:80000
KS ci ratio: 1.930971e-01	ci left: 4.630063e-03	ci right 5.631342e-03	k: 409	n:80000
LACE1   80000 perm   22 sec   (3580 perm/sec)   p_kst 5.112500e-03   p_cons 2.996500e-01   p_joint 1.466250e-02

Joint ci ratio: 1.093495e-01	ci left: 1.330741e-02	ci right 1.485747e-02	k: 1266	n:90000
Cons ci ratio: 2.000197e-02	ci left: 2.961096e-01	ci right 3.021033e-01	k: 26919	n:90000
KS ci ratio: 1.823023e-01	ci left: 4.645081e-03	ci right 5.587250e-03	k: 459	n:90000
LACE1   90000 perm   26 sec   (3494 perm/sec)   p_kst 5.100000e-03   p_cons 2.991000e-01   p_joint 1.406667e-02

Joint ci ratio: 1.132941e-01	ci left: 1.115934e-02	ci right 1.250919e-02	k: 1182	n:100000
Cons ci ratio: 1.850649e-02	ci left: 3.068348e-01	ci right 3.125762e-01	k: 30970	n:100000
KS ci ratio: 1.731365e-01	ci left: 4.658344e-03	ci right 5.550732e-03	k: 509	n:100000
LACE1   100000 perm   29 sec   (3468 perm/sec)   p_kst 5.090000e-03   p_cons 3.097000e-01   p_joint 1.182000e-02

Joint ci ratio: 1.163244e-01	ci left: 9.623445e-03	ci right 1.082077e-02	k: 1123	n:110000
Cons ci ratio: 1.762242e-02	ci left: 3.075213e-01	ci right 3.129978e-01	k: 34128	n:110000
KS ci ratio: 1.643447e-01	ci left: 4.722472e-03	ci right 5.576666e-03	k: 565	n:110000
LACE1   110000 perm   33 sec   (3373 perm/sec)   p_kst 5.136364e-03   p_cons 3.102545e-01   p_joint 1.020909e-02

Joint ci ratio: 1.207916e-01	ci left: 8.174214e-03	ci right 9.233068e-03	k: 1043	n:120000
Cons ci ratio: 1.685828e-02	ci left: 3.079906e-01	ci right 3.132352e-01	k: 37273	n:120000
KS ci ratio: 1.577924e-01	ci left: 4.712812e-03	ci right 5.528053e-03	k: 613	n:120000
LACE1   120000 perm   36 sec   (3355 perm/sec)   p_kst 5.108333e-03   p_cons 3.106083e-01   p_joint 8.691667e-03

Joint ci ratio: 1.207741e-01	ci left: 7.552741e-03	ci right 8.530933e-03	k: 1044	n:130000
Cons ci ratio: 1.620103e-02	ci left: 3.079852e-01	ci right 3.130233e-01	k: 40365	n:130000
KS ci ratio: 1.525462e-01	ci left: 4.668207e-03	ci right 5.446430e-03	k: 656	n:130000
LACE1   130000 perm   39 sec   (3365 perm/sec)   p_kst 5.046154e-03   p_cons 3.105000e-01   p_joint 8.030769e-03

Joint ci ratio: 1.176191e-01	ci left: 7.408230e-03	ci right 8.340897e-03	k: 1101	n:140000
Cons ci ratio: 1.561694e-02	ci left: 3.079341e-01	ci right 3.127880e-01	k: 43450	n:140000
KS ci ratio: 1.486468e-01	ci left: 4.575327e-03	ci right 5.316834e-03	k: 691	n:140000
LACE1   140000 perm   42 sec   (3369 perm/sec)   p_kst 4.935714e-03   p_cons 3.103571e-01   p_joint 7.864286e-03

Joint ci ratio: 1.275913e-01	ci left: 5.854183e-03	ci right 6.658415e-03	k: 937	n:150000
Cons ci ratio: 1.510095e-02	ci left: 3.076333e-01	ci right 3.123208e-01	k: 46496	n:150000
KS ci ratio: 1.428752e-01	ci left: 4.636460e-03	ci right 5.356212e-03	k: 748	n:150000
LACE1   150000 perm   45 sec   (3369 perm/sec)   p_kst 4.986667e-03   p_cons 3.099733e-01   p_joint 6.246667e-03

Joint ci ratio: 1.226506e-01	ci left: 5.954506e-03	ci right 6.738544e-03	k: 1014	n:160000
Cons ci ratio: 1.462994e-02	ci left: 3.074597e-01	ci right 3.119972e-01	k: 49556	n:160000
KS ci ratio: 1.373853e-01	ci left: 4.714581e-03	ci right 5.416038e-03	k: 809	n:160000
LACE1   160000 perm   48 sec   (3361 perm/sec)   p_kst 5.056250e-03   p_cons 3.097250e-01   p_joint 6.337500e-03

Joint ci ratio: 9.431732e-02	ci left: 9.584154e-03	ci right 1.053855e-02	k: 1709	n:170000
Cons ci ratio: 1.418441e-02	ci left: 3.077901e-01	ci right 3.121929e-01	k: 52698	n:170000
KS ci ratio: 1.324067e-01	ci left: 4.789665e-03	ci right 5.474437e-03	k: 871	n:170000
LACE1   170000 perm   51 sec   (3324 perm/sec)   p_kst 5.123529e-03   p_cons 3.099882e-01   p_joint 1.005294e-02

Joint ci ratio: 1.009950e-01	ci left: 7.880617e-03	ci right 8.724223e-03	k: 1493	n:180000
Cons ci ratio: 1.378153e-02	ci left: 3.079524e-01	ci right 3.122315e-01	k: 55816	n:180000
KS ci ratio: 1.294033e-01	ci left: 4.743884e-03	ci right 5.405544e-03	k: 912	n:180000
LACE1   180000 perm   55 sec   (3278 perm/sec)   p_kst 5.066667e-03   p_cons 3.100889e-01   p_joint 8.294444e-03

Joint ci ratio: 1.016709e-01	ci left: 7.368283e-03	ci right 8.162635e-03	k: 1474	n:190000
Cons ci ratio: 1.341659e-02	ci left: 3.079259e-01	ci right 3.120904e-01	k: 58901	n:190000
KS ci ratio: 1.254766e-01	ci left: 4.789745e-03	ci right 5.436022e-03	k: 970	n:190000
LACE1   190000 perm   58 sec   (3265 perm/sec)   p_kst 5.105263e-03   p_cons 3.100053e-01   p_joint 7.757895e-03

Joint ci ratio: 1.012080e-01	ci left: 7.068037e-03	ci right 7.826344e-03	k: 1488	n:200000
Cons ci ratio: 1.307246e-02	ci left: 3.081231e-01	ci right 3.121824e-01	k: 62030	n:200000
KS ci ratio: 1.227290e-01	ci left: 4.763424e-03	ci right 5.391053e-03	k: 1014	n:200000
LACE1   200000 perm   62 sec   (3251 perm/sec)   p_kst 5.070000e-03   p_cons 3.101500e-01   p_joint 7.440000e-03

Joint ci ratio: 1.016394e-01	ci left: 6.675702e-03	ci right 7.395149e-03	k: 1476	n:210000
Cons ci ratio: 1.275991e-02	ci left: 3.080887e-01	ci right 3.120499e-01	k: 65114	n:210000
KS ci ratio: 1.200973e-01	ci left: 4.744369e-03	ci right 5.355130e-03	k: 1059	n:210000
LACE1   210000 perm   65 sec   (3218 perm/sec)   p_kst 5.042857e-03   p_cons 3.100667e-01   p_joint 7.028571e-03

Joint ci ratio: 1.004977e-01	ci left: 6.522874e-03	ci right 7.217487e-03	k: 1510	n:220000
Cons ci ratio: 1.245922e-02	ci left: 3.083853e-01	ci right 3.122561e-01	k: 68270	n:220000
KS ci ratio: 1.178425e-01	ci left: 4.709529e-03	ci right 5.303628e-03	k: 1100	n:220000
LACE1   220000 perm   69 sec   (3200 perm/sec)   p_kst 5.000000e-03   p_cons 3.103182e-01   p_joint 6.863636e-03

Joint ci ratio: 1.018792e-01	ci left: 6.069687e-03	ci right 6.725455e-03	k: 1470	n:230000
Cons ci ratio: 1.218390e-02	ci left: 3.084790e-01	ci right 3.122649e-01	k: 71385	n:230000
KS ci ratio: 1.149538e-01	ci left: 4.741160e-03	ci right 5.323595e-03	k: 1156	n:230000
LACE1   230000 perm   74 sec   (3118 perm/sec)   p_kst 5.026087e-03   p_cons 3.103696e-01   p_joint 6.391304e-03

Joint ci ratio: 8.530973e-02	ci left: 8.348634e-03	ci right 9.096637e-03	k: 2092	n:240000
Cons ci ratio: 1.192188e-02	ci left: 3.087156e-01	ci right 3.124223e-01	k: 74536	n:240000
KS ci ratio: 1.133050e-01	ci left: 4.681226e-03	ci right 5.247497e-03	k: 1190	n:240000
LACE1   240000 perm   78 sec   (3072 perm/sec)   p_kst 4.958333e-03   p_cons 3.105667e-01   p_joint 8.716667e-03

Joint ci ratio: 9.520210e-02	ci left: 6.415188e-03	ci right 7.060327e-03	k: 1683	n:250000
Cons ci ratio: 1.197317e-02	ci left: 2.982918e-01	ci right 3.018888e-01	k: 75022	n:250000
KS ci ratio: 1.139914e-01	ci left: 4.439537e-03	ci right 4.980044e-03	k: 1176	n:250000
LACE1   250000 perm   82 sec   (3056 perm/sec)   p_kst 4.704000e-03   p_cons 3.000880e-01   p_joint 6.732000e-03

Joint ci ratio: 9.465043e-02	ci left: 6.243521e-03	ci right 6.867555e-03	k: 1703	n:260000
Cons ci ratio: 1.173431e-02	ci left: 2.985537e-01	ci right 3.020815e-01	k: 78082	n:260000
KS ci ratio: 1.115528e-01	ci left: 4.463148e-03	ci right 4.994139e-03	k: 1228	n:260000
LACE1   260000 perm   86 sec   (3029 perm/sec)   p_kst 4.723077e-03   p_cons 3.003154e-01   p_joint 6.550000e-03

Joint ci ratio: 9.286893e-02	ci left: 6.250993e-03	ci right 6.863375e-03	k: 1769	n:270000
Cons ci ratio: 1.151924e-02	ci left: 2.984308e-01	ci right 3.018920e-01	k: 81043	n:270000
KS ci ratio: 1.094360e-01	ci left: 4.470711e-03	ci right 4.991859e-03	k: 1276	n:270000
LACE1   270000 perm   90 sec   (3008 perm/sec)   p_kst 4.725926e-03   p_cons 3.001593e-01   p_joint 6.551852e-03

Joint ci ratio: 9.282711e-02	ci left: 6.034689e-03	ci right 6.625599e-03	k: 1771	n:280000
Cons ci ratio: 1.131443e-02	ci left: 2.983600e-01	ci right 3.017585e-01	k: 84016	n:280000
KS ci ratio: 1.078450e-01	ci left: 4.443066e-03	ci right 4.952983e-03	k: 1314	n:280000
LACE1   280000 perm   94 sec   (2988 perm/sec)   p_kst 4.692857e-03   p_cons 3.000571e-01   p_joint 6.325000e-03

Joint ci ratio: 9.129489e-02	ci left: 6.028728e-03	ci right 6.608790e-03	k: 1831	n:290000
Cons ci ratio: 1.111459e-02	ci left: 2.985046e-01	ci right 3.018443e-01	k: 87050	n:290000
KS ci ratio: 1.062032e-01	ci left: 4.427450e-03	ci right 4.927356e-03	k: 1355	n:290000
LACE1   290000 perm   98 sec   (2960 perm/sec)   p_kst 4.672414e-03   p_cons 3.001724e-01   p_joint 6.313793e-03

Joint ci ratio: 7.125822e-02	ci left: 9.630655e-03	ci right 1.034553e-02	k: 2995	n:300000
Cons ci ratio: 1.067283e-02	ci left: 3.085283e-01	ci right 3.118421e-01	k: 93055	n:300000
KS ci ratio: 1.047095e-01	ci left: 4.406437e-03	ci right 4.896541e-03	k: 1394	n:300000
LACE1   300000 perm   104 sec   (2878 perm/sec)   p_kst 4.646667e-03   p_cons 3.101833e-01   p_joint 9.983333e-03

Joint ci ratio: 7.215041e-02	ci left: 9.091804e-03	ci right 9.775478e-03	k: 2923	n:310000
Cons ci ratio: 1.049539e-02	ci left: 3.087135e-01	ci right 3.119739e-01	k: 96206	n:310000
KS ci ratio: 1.026675e-01	ci left: 4.440258e-03	ci right 4.923912e-03	k: 1450	n:310000
LACE1   310000 perm   109 sec   (2857 perm/sec)   p_kst 4.677419e-03   p_cons 3.103419e-01   p_joint 9.429032e-03

Joint ci ratio: 7.605007e-02	ci left: 7.921099e-03	ci right 8.550356e-03	k: 2634	n:320000
Cons ci ratio: 1.033421e-02	ci left: 3.085694e-01	ci right 3.117778e-01	k: 99255	n:320000
KS ci ratio: 1.012820e-01	ci left: 4.423310e-03	ci right 4.898229e-03	k: 1490	n:320000
LACE1   320000 perm   113 sec   (2838 perm/sec)   p_kst 4.656250e-03   p_cons 3.101719e-01   p_joint 8.231250e-03

Joint ci ratio: 7.579909e-02	ci left: 7.734547e-03	ci right 8.346866e-03	k: 2652	n:330000
Cons ci ratio: 1.017554e-02	ci left: 3.086310e-01	ci right 3.117905e-01	k: 102369	n:330000
KS ci ratio: 9.998402e-02	ci left: 4.404475e-03	ci right 4.870956e-03	k: 1529	n:330000
LACE1   330000 perm   117 sec   (2817 perm/sec)   p_kst 4.633333e-03   p_cons 3.102091e-01   p_joint 8.036364e-03

Outputting figure to mutsig2_images.part000000000094/LACE1.4_1498_330000_0.0046333_0.31021_0.0080364.png
                gene_name: LACE1
               theta_stop: 0.100 
                    nperm: 330000 
                     p_ks: 0.0046 
        ci_ks_bounds_left: 0.0044 
       ci_ks_bounds_right: 0.0049 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.0080 
     ci_joint_bounds_left: 0.0077 
    ci_joint_bounds_right: 0.0083 

Current progress: 43 percent done.
KRTAP10-6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.943566e-02	ci left: 6.298992e-01	ci right 6.488195e-01	k: 6394	n:10000
KS ci ratio: 4.444821e-03	ci left: 9.850162e-01	ci right 9.894933e-01	k: 9874	n:10000
KRTAP10-6   10000 perm   1 sec   (6863 perm/sec)   p_kst 9.874000e-01   p_cons 6.394000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KRTAP10-6.3_1102_10000_0.9874_0.6394_1.png
                gene_name: KRTAP10-6
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
KRTAP13-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.215377e-02	ci left: 3.514787e-01	ci right 3.704024e-01	k: 3609	n:10000
Cons ci ratio: 4.478554e-02	ci left: 4.239572e-01	ci right 4.434814e-01	k: 4337	n:10000
KS ci ratio: 5.239198e-02	ci left: 3.493913e-01	ci right 3.682910e-01	k: 3588	n:10000
KRTAP13-1   10000 perm   1 sec   (6727 perm/sec)   p_kst 3.588000e-01   p_cons 4.337000e-01   p_joint 3.609000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP13-1.3_523_10000_0.3588_0.4337_0.3609.png
                gene_name: KRTAP13-1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 52 percent done.
KRTAP19-5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.751282e-02	ci left: 3.079837e-01	ci right 3.263229e-01	k: 3171	n:10000
Cons ci ratio: 4.603814e-02	ci left: 4.105002e-01	ci right 4.299463e-01	k: 4202	n:10000
KS ci ratio: 9.731480e-02	ci left: 1.327651e-01	ci right 1.464456e-01	k: 1395	n:10000
KRTAP19-5   10000 perm   1 sec   (6967 perm/sec)   p_kst 1.395000e-01   p_cons 4.202000e-01   p_joint 3.171000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP19-5.3_223_10000_0.1395_0.4202_0.3171.png
                gene_name: KRTAP19-5
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 57 percent done.
KRTAP27-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.485738e-02	ci left: 2.070805e-01	ci right 2.232857e-01	k: 2151	n:10000
Cons ci ratio: 4.719059e-02	ci left: 3.985447e-01	ci right 4.179088e-01	k: 4082	n:10000
KS ci ratio: 1.114983e-01	ci left: 1.038342e-01	ci right 1.161941e-01	k: 1099	n:10000
KRTAP27-1   10000 perm   2 sec   (6226 perm/sec)   p_kst 1.099000e-01   p_cons 4.082000e-01   p_joint 2.151000e-01

Joint ci ratio: 6.333366e-02	ci left: 1.556348e-01	ci right 1.658640e-01	k: 3214	n:20000
Cons ci ratio: 3.319987e-02	ci left: 4.038703e-01	ci right 4.175557e-01	k: 8214	n:20000
KS ci ratio: 7.775489e-02	ci left: 1.083489e-01	ci right 1.171640e-01	k: 2254	n:20000
KRTAP27-1   20000 perm   3 sec   (5979 perm/sec)   p_kst 1.127000e-01   p_cons 4.107000e-01   p_joint 1.607000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP27-1.3_628_20000_0.1127_0.4107_0.1607.png
                gene_name: KRTAP27-1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 61 percent done.
KRTAP4-3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.531941e-02	ci left: 6.965581e-01	ci right 7.145221e-01	k: 7056	n:10000
KS ci ratio: 1.402963e-02	ci left: 8.801201e-01	ci right 8.926539e-01	k: 8865	n:10000
KRTAP4-3   10000 perm   2 sec   (5548 perm/sec)   p_kst 8.865000e-01   p_cons 7.056000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KRTAP4-3.3_592_10000_0.8865_0.7056_1.png
                gene_name: KRTAP4-3
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
KRTAP6-2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.305878e-03	ci left: 9.793064e-01	ci right 9.846075e-01	k: 9821	n:10000
KS ci ratio: 1.801804e-02	ci left: 8.180184e-01	ci right 8.329915e-01	k: 8256	n:10000
KRTAP6-2   10000 perm   2 sec   (4710 perm/sec)   p_kst 8.256000e-01   p_cons 9.821000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KRTAP6-2.3_193_10000_0.8256_0.9821_1.png
                gene_name: KRTAP6-2
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
L2HGDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
Cons ci ratio: 9.747717e-02	ci left: 1.323733e-01	ci right 1.460376e-01	k: 1391	n:10000
KS ci ratio: 5.319759e-01	ci left: 3.972510e-03	ci right 6.926868e-03	k: 53	n:10000
L2HGDH   10000 perm   2 sec   (5095 perm/sec)   p_kst 5.300000e-03   p_cons 1.391000e-01   p_joint 1.240000e-02

Joint ci ratio: 2.047293e-01	ci left: 1.615527e-02	ci right 1.988674e-02	k: 359	n:20000
Cons ci ratio: 6.778656e-02	ci left: 1.383726e-01	ci right 1.481313e-01	k: 2864	n:20000
KS ci ratio: 3.852437e-01	ci left: 4.160297e-03	ci right 6.187672e-03	k: 102	n:20000
L2HGDH   20000 perm   4 sec   (4953 perm/sec)   p_kst 5.100000e-03   p_cons 1.432000e-01   p_joint 1.795000e-02

Joint ci ratio: 2.039269e-01	ci left: 1.092521e-02	ci right 1.343725e-02	k: 364	n:30000
Cons ci ratio: 5.529900e-02	ci left: 1.394850e-01	ci right 1.474509e-01	k: 4303	n:30000
KS ci ratio: 3.171422e-01	ci left: 4.264115e-03	ci right 5.900658e-03	k: 151	n:30000
L2HGDH   30000 perm   7 sec   (4221 perm/sec)   p_kst 5.033333e-03   p_cons 1.434333e-01   p_joint 1.213333e-02

Joint ci ratio: 1.491517e-01	ci left: 1.570766e-02	ci right 1.826316e-02	k: 678	n:40000
Cons ci ratio: 4.827249e-02	ci left: 1.380980e-01	ci right 1.449541e-01	k: 5660	n:40000
KS ci ratio: 2.691479e-01	ci left: 4.565414e-03	ci right 6.007842e-03	k: 210	n:40000
L2HGDH   40000 perm   10 sec   (3985 perm/sec)   p_kst 5.250000e-03   p_cons 1.415000e-01   p_joint 1.695000e-02

Joint ci ratio: 1.541995e-01	ci left: 1.177534e-02	ci right 1.376182e-02	k: 637	n:50000
Cons ci ratio: 4.310979e-02	ci left: 1.388324e-01	ci right 1.449692e-01	k: 7094	n:50000
KS ci ratio: 2.434157e-01	ci left: 4.532077e-03	ci right 5.806414e-03	k: 257	n:50000
L2HGDH   50000 perm   14 sec   (3580 perm/sec)   p_kst 5.140000e-03   p_cons 1.418800e-01   p_joint 1.274000e-02

Joint ci ratio: 1.626888e-01	ci left: 8.803256e-03	ci right 1.037806e-02	k: 574	n:60000
Cons ci ratio: 3.951613e-02	ci left: 1.381087e-01	ci right 1.436928e-01	k: 8453	n:60000
KS ci ratio: 2.209910e-01	ci left: 4.640211e-03	ci right 5.808434e-03	k: 312	n:60000
L2HGDH   60000 perm   18 sec   (3381 perm/sec)   p_kst 5.200000e-03   p_cons 1.408833e-01   p_joint 9.566667e-03

Joint ci ratio: 1.233851e-01	ci left: 1.333657e-02	ci right 1.510404e-02	k: 994	n:70000
Cons ci ratio: 3.652668e-02	ci left: 1.386990e-01	ci right 1.438736e-01	k: 9889	n:70000
KS ci ratio: 2.057816e-01	ci left: 4.626427e-03	ci right 5.700934e-03	k: 360	n:70000
L2HGDH   70000 perm   20 sec   (3476 perm/sec)   p_kst 5.142857e-03   p_cons 1.412714e-01   p_joint 1.420000e-02

Joint ci ratio: 1.039585e-01	ci left: 1.655392e-02	ci right 1.838131e-02	k: 1396	n:80000
Cons ci ratio: 3.421672e-02	ci left: 1.385207e-01	ci right 1.433554e-01	k: 11274	n:80000
KS ci ratio: 1.930971e-01	ci left: 4.630063e-03	ci right 5.631342e-03	k: 409	n:80000
L2HGDH   80000 perm   23 sec   (3541 perm/sec)   p_kst 5.112500e-03   p_cons 1.409250e-01   p_joint 1.745000e-02

Joint ci ratio: 9.743492e-02	ci left: 1.680517e-02	ci right 1.853722e-02	k: 1589	n:90000
Cons ci ratio: 3.229598e-02	ci left: 1.383902e-01	ci right 1.429441e-01	k: 12659	n:90000
KS ci ratio: 1.793857e-01	ci left: 4.804238e-03	ci right 5.761408e-03	k: 474	n:90000
L2HGDH   90000 perm   26 sec   (3396 perm/sec)   p_kst 5.266667e-03   p_cons 1.406556e-01   p_joint 1.765556e-02

Joint ci ratio: 9.869598e-02	ci left: 1.476296e-02	ci right 1.630533e-02	k: 1552	n:100000
Cons ci ratio: 3.063064e-02	ci left: 1.385702e-01	ci right 1.428906e-01	k: 14072	n:100000
KS ci ratio: 1.707959e-01	ci left: 4.792346e-03	ci right 5.696716e-03	k: 523	n:100000
L2HGDH   100000 perm   29 sec   (3425 perm/sec)   p_kst 5.230000e-03   p_cons 1.407200e-01   p_joint 1.552000e-02

Joint ci ratio: 8.151399e-02	ci left: 1.975090e-02	ci right 2.143815e-02	k: 2264	n:110000
Cons ci ratio: 2.913654e-02	ci left: 1.392374e-01	ci right 1.433633e-01	k: 15542	n:110000
KS ci ratio: 1.624796e-01	ci left: 4.835844e-03	ci right 5.699648e-03	k: 578	n:110000
L2HGDH   110000 perm   32 sec   (3453 perm/sec)   p_kst 5.254545e-03   p_cons 1.412909e-01   p_joint 2.058182e-02

Joint ci ratio: 8.059369e-02	ci left: 1.855357e-02	ci right 2.011978e-02	k: 2319	n:120000
Cons ci ratio: 2.790092e-02	ci left: 1.392840e-01	ci right 1.432334e-01	k: 16950	n:120000
KS ci ratio: 1.565164e-01	ci left: 4.792883e-03	ci right 5.614641e-03	k: 623	n:120000
L2HGDH   120000 perm   35 sec   (3468 perm/sec)   p_kst 5.191667e-03   p_cons 1.412500e-01   p_joint 1.932500e-02

Joint ci ratio: 7.978385e-02	ci left: 1.750289e-02	ci right 1.896486e-02	k: 2369	n:130000
Cons ci ratio: 2.686735e-02	ci left: 1.388140e-01	ci right 1.426020e-01	k: 18291	n:130000
KS ci ratio: 1.506003e-01	ci left: 4.794040e-03	ci right 5.582126e-03	k: 673	n:130000
L2HGDH   130000 perm   37 sec   (3473 perm/sec)   p_kst 5.176923e-03   p_cons 1.407000e-01   p_joint 1.822308e-02

Joint ci ratio: 8.384934e-02	ci left: 1.472648e-02	ci right 1.602228e-02	k: 2151	n:140000
Cons ci ratio: 2.589391e-02	ci left: 1.388470e-01	ci right 1.424965e-01	k: 19693	n:140000
KS ci ratio: 1.460192e-01	ci left: 4.747346e-03	ci right 5.501946e-03	k: 716	n:140000
L2HGDH   140000 perm   40 sec   (3470 perm/sec)   p_kst 5.114286e-03   p_cons 1.406643e-01   p_joint 1.536429e-02

Joint ci ratio: 9.707776e-02	ci left: 1.023102e-02	ci right 1.128135e-02	k: 1612	n:150000
Cons ci ratio: 2.508353e-02	ci left: 1.382609e-01	ci right 1.417797e-01	k: 21002	n:150000
KS ci ratio: 1.409955e-01	ci left: 4.765080e-03	ci right 5.494250e-03	k: 768	n:150000
L2HGDH   150000 perm   43 sec   (3462 perm/sec)   p_kst 5.120000e-03   p_cons 1.400133e-01   p_joint 1.074667e-02

Joint ci ratio: 8.686246e-02	ci left: 1.202249e-02	ci right 1.312028e-02	k: 2010	n:160000
Cons ci ratio: 2.428274e-02	ci left: 1.383592e-01	ci right 1.417664e-01	k: 22409	n:160000
KS ci ratio: 1.364571e-01	ci left: 4.780987e-03	ci right 5.487128e-03	k: 820	n:160000
L2HGDH   160000 perm   46 sec   (3452 perm/sec)   p_kst 5.125000e-03   p_cons 1.400562e-01   p_joint 1.256250e-02

Joint ci ratio: 8.430270e-02	ci left: 1.202908e-02	ci right 1.309352e-02	k: 2134	n:170000
Cons ci ratio: 2.355865e-02	ci left: 1.384006e-01	ci right 1.417058e-01	k: 23808	n:170000
KS ci ratio: 1.325596e-01	ci left: 4.778289e-03	ci right 5.462285e-03	k: 869	n:170000
L2HGDH   170000 perm   49 sec   (3436 perm/sec)   p_kst 5.111765e-03   p_cons 1.400471e-01   p_joint 1.255294e-02

Joint ci ratio: 8.184667e-02	ci left: 1.206803e-02	ci right 1.310331e-02	k: 2264	n:180000
Cons ci ratio: 2.288146e-02	ci left: 1.385880e-01	ci right 1.418013e-01	k: 25234	n:180000
KS ci ratio: 1.285569e-01	ci left: 4.808409e-03	ci right 5.474348e-03	k: 924	n:180000
L2HGDH   180000 perm   53 sec   (3416 perm/sec)   p_kst 5.133333e-03   p_cons 1.401889e-01   p_joint 1.257778e-02

Joint ci ratio: 7.964403e-02	ci left: 1.208780e-02	ci right 1.309557e-02	k: 2391	n:190000
Cons ci ratio: 2.225415e-02	ci left: 1.388146e-01	ci right 1.419438e-01	k: 26671	n:190000
KS ci ratio: 1.259337e-01	ci left: 4.754056e-03	ci right 5.398029e-03	k: 963	n:190000
L2HGDH   190000 perm   56 sec   (3394 perm/sec)   p_kst 5.068421e-03   p_cons 1.403737e-01   p_joint 1.258421e-02

Joint ci ratio: 9.364637e-02	ci left: 8.278097e-03	ci right 9.096239e-03	k: 1736	n:200000
Cons ci ratio: 2.168743e-02	ci left: 1.388901e-01	ci right 1.419403e-01	k: 28082	n:200000
KS ci ratio: 1.229117e-01	ci left: 4.748883e-03	ci right 5.375595e-03	k: 1011	n:200000
L2HGDH   200000 perm   59 sec   (3372 perm/sec)   p_kst 5.055000e-03   p_cons 1.404100e-01   p_joint 8.680000e-03

Joint ci ratio: 9.793459e-02	ci left: 7.200465e-03	ci right 7.946558e-03	k: 1589	n:210000
Cons ci ratio: 2.115564e-02	ci left: 1.390305e-01	ci right 1.420080e-01	k: 29508	n:210000
KS ci ratio: 1.204978e-01	ci left: 4.712034e-03	ci right 5.320800e-03	k: 1052	n:210000
L2HGDH   210000 perm   63 sec   (3347 perm/sec)   p_kst 5.009524e-03   p_cons 1.405143e-01   p_joint 7.566667e-03

Joint ci ratio: 9.493108e-02	ci left: 7.325649e-03	ci right 8.060139e-03	k: 1691	n:220000
Cons ci ratio: 2.066154e-02	ci left: 1.391545e-01	ci right 1.420641e-01	k: 30933	n:220000
KS ci ratio: 1.166245e-01	ci left: 4.811023e-03	ci right 5.411221e-03	k: 1123	n:220000
L2HGDH   220000 perm   66 sec   (3319 perm/sec)   p_kst 5.104545e-03   p_cons 1.406045e-01   p_joint 7.686364e-03

Joint ci ratio: 9.294799e-02	ci left: 7.317075e-03	ci right 8.034546e-03	k: 1764	n:230000
Cons ci ratio: 2.021615e-02	ci left: 1.390822e-01	ci right 1.419269e-01	k: 32315	n:230000
KS ci ratio: 1.138223e-01	ci left: 4.838313e-03	ci right 5.426439e-03	k: 1179	n:230000
L2HGDH   230000 perm   70 sec   (3292 perm/sec)   p_kst 5.126087e-03   p_cons 1.405000e-01   p_joint 7.669565e-03

Joint ci ratio: 9.108420e-02	ci left: 7.309363e-03	ci right 8.010939e-03	k: 1837	n:240000
Cons ci ratio: 1.978915e-02	ci left: 1.391286e-01	ci right 1.419134e-01	k: 33724	n:240000
KS ci ratio: 1.113033e-01	ci left: 4.855384e-03	ci right 5.431667e-03	k: 1233	n:240000
L2HGDH   240000 perm   74 sec   (3263 perm/sec)   p_kst 5.137500e-03   p_cons 1.405167e-01   p_joint 7.654167e-03

Joint ci ratio: 8.909360e-02	ci left: 7.341514e-03	ci right 8.029974e-03	k: 1920	n:250000
Cons ci ratio: 1.940032e-02	ci left: 1.390205e-01	ci right 1.417479e-01	k: 35095	n:250000
KS ci ratio: 1.085640e-01	ci left: 4.906247e-03	ci right 5.473318e-03	k: 1296	n:250000
L2HGDH   250000 perm   77 sec   (3236 perm/sec)   p_kst 5.184000e-03   p_cons 1.403800e-01   p_joint 7.680000e-03

Joint ci ratio: 8.709676e-02	ci left: 7.393923e-03	ci right 8.070966e-03	k: 2009	n:260000
Cons ci ratio: 1.902475e-02	ci left: 1.390323e-01	ci right 1.417065e-01	k: 36495	n:260000
KS ci ratio: 1.058220e-01	ci left: 4.972081e-03	ci right 5.531343e-03	k: 1364	n:260000
L2HGDH   260000 perm   81 sec   (3208 perm/sec)   p_kst 5.246154e-03   p_cons 1.403654e-01   p_joint 7.726923e-03

Joint ci ratio: 8.522840e-02	ci left: 7.442608e-03	ci right 8.108763e-03	k: 2098	n:270000
Cons ci ratio: 1.866158e-02	ci left: 1.391543e-01	ci right 1.417793e-01	k: 37925	n:270000
KS ci ratio: 1.033866e-01	ci left: 5.022379e-03	ci right 5.573507e-03	k: 1429	n:270000
L2HGDH   270000 perm   85 sec   (3180 perm/sec)   p_kst 5.292593e-03   p_cons 1.404630e-01   p_joint 7.770370e-03

Joint ci ratio: 7.960597e-02	ci left: 8.243790e-03	ci right 8.930725e-03	k: 2403	n:280000
Cons ci ratio: 1.831899e-02	ci left: 1.392610e-01	ci right 1.418393e-01	k: 39353	n:280000
KS ci ratio: 1.012481e-01	ci left: 5.055295e-03	ci right 5.597879e-03	k: 1490	n:280000
L2HGDH   280000 perm   89 sec   (3152 perm/sec)   p_kst 5.321429e-03   p_cons 1.405464e-01   p_joint 8.582143e-03

Joint ci ratio: 7.810849e-02	ci left: 8.273892e-03	ci right 8.949776e-03	k: 2496	n:290000
Cons ci ratio: 1.800153e-02	ci left: 1.392680e-01	ci right 1.418012e-01	k: 40754	n:290000
KS ci ratio: 9.943056e-02	ci left: 5.065871e-03	ci right 5.599260e-03	k: 1545	n:290000
L2HGDH   290000 perm   93 sec   (3124 perm/sec)   p_kst 5.327586e-03   p_cons 1.405310e-01   p_joint 8.606897e-03

Outputting figure to mutsig2_images.part000000000094/L2HGDH.3_1432_290000_0.0053276_0.14053_0.0086069.png
                gene_name: L2HGDH
               theta_stop: 0.099 
                    nperm: 290000 
                     p_ks: 0.0053 
        ci_ks_bounds_left: 0.0051 
       ci_ks_bounds_right: 0.0056 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.0086 
     ci_joint_bounds_left: 0.0083 
    ci_joint_bounds_right: 0.0089 

Current progress: 74 percent done.
L3MBTL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.952468e-02	ci left: 4.859529e-01	ci right 5.056495e-01	k: 4958	n:10000
Cons ci ratio: 9.032022e-02	ci left: 1.512941e-01	ci right 1.657054e-01	k: 1584	n:10000
KS ci ratio: 4.618837e-03	ci left: 9.839328e-01	ci right 9.885776e-01	k: 9864	n:10000
L3MBTL3   10000 perm   2 sec   (5781 perm/sec)   p_kst 9.864000e-01   p_cons 1.584000e-01   p_joint 4.958000e-01

Outputting figure to mutsig2_images.part000000000094/L3MBTL3.3_2427_10000_0.9864_0.1584_0.4958.png
                gene_name: L3MBTL3
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 78 percent done.
KRTAP10-7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.735981e-02	ci left: 6.631019e-01	ci right 6.815976e-01	k: 6724	n:10000
Cons ci ratio: 2.992248e-02	ci left: 6.222595e-01	ci right 6.412637e-01	k: 6318	n:10000
KS ci ratio: 7.997575e-02	ci left: 1.858959e-01	ci right 2.014830e-01	k: 1936	n:10000
KRTAP10-7   10000 perm   2 sec   (5241 perm/sec)   p_kst 1.936000e-01   p_cons 6.318000e-01   p_joint 6.724000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP10-7.2_1121_10000_0.1936_0.6318_0.6724.png
                gene_name: KRTAP10-7
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 83 percent done.
KRTAP11-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.025773e-02	ci left: 6.170337e-01	ci right 6.360925e-01	k: 6266	n:10000
KS ci ratio: 3.212332e-02	ci left: 5.885136e-01	ci right 6.078292e-01	k: 5982	n:10000
KRTAP11-1   10000 perm   2 sec   (6272 perm/sec)   p_kst 5.982000e-01   p_cons 6.266000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000094/KRTAP11-1.2_496_10000_0.5982_0.6266_1.png
                gene_name: KRTAP11-1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
KRTAP15-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.220355e-02	ci left: 5.873093e-01	ci right 6.066342e-01	k: 5970	n:10000
Cons ci ratio: 3.979435e-02	ci left: 4.825547e-01	ci right 5.022497e-01	k: 4924	n:10000
KS ci ratio: 2.108542e-02	ci left: 7.672937e-01	ci right 7.837455e-01	k: 7756	n:10000
KRTAP15-1   10000 perm   2 sec   (6231 perm/sec)   p_kst 7.756000e-01   p_cons 4.924000e-01   p_joint 5.970000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP15-1.2_418_10000_0.7756_0.4924_0.597.png
                gene_name: KRTAP15-1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 91 percent done.
KRTAP19-6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.861344e-01	ci left: 8.233934e-03	ci right 1.225906e-02	k: 101	n:10000
Cons ci ratio: 2.371212e-01	ci left: 2.344048e-02	ci right 2.983930e-02	k: 265	n:10000
KS ci ratio: 8.458342e-02	ci left: 1.692694e-01	ci right 1.843194e-01	k: 1767	n:10000
KRTAP19-6   10000 perm   2 sec   (5570 perm/sec)   p_kst 1.767000e-01   p_cons 2.650000e-02   p_joint 1.010000e-02

Joint ci ratio: 1.952745e-01	ci left: 1.781911e-02	ci right 2.172227e-02	k: 394	n:20000
Cons ci ratio: 1.633108e-01	ci left: 2.570945e-02	ci right 3.032914e-02	k: 559	n:20000
KS ci ratio: 5.911097e-02	ci left: 1.748950e-01	ci right 1.855981e-01	k: 3604	n:20000
KRTAP19-6   20000 perm   4 sec   (5670 perm/sec)   p_kst 1.802000e-01   p_cons 2.795000e-02   p_joint 1.970000e-02

Joint ci ratio: 1.508956e-01	ci left: 2.033780e-02	ci right 2.368899e-02	k: 659	n:30000
Cons ci ratio: 1.339189e-01	ci left: 2.590436e-02	ci right 2.965451e-02	k: 832	n:30000
KS ci ratio: 4.838697e-02	ci left: 1.751388e-01	ci right 1.838567e-01	k: 5384	n:30000
KRTAP19-6   30000 perm   5 sec   (5634 perm/sec)   p_kst 1.794667e-01   p_cons 2.773333e-02   p_joint 2.196667e-02

Joint ci ratio: 1.049121e-01	ci left: 3.195298e-02	ci right 3.551513e-02	k: 1348	n:40000
Cons ci ratio: 1.149003e-01	ci left: 2.664812e-02	ci right 2.992084e-02	k: 1130	n:40000
KS ci ratio: 4.163612e-02	ci left: 1.776096e-01	ci right 1.851867e-01	k: 7255	n:40000
KRTAP19-6   40000 perm   8 sec   (5308 perm/sec)   p_kst 1.813750e-01   p_cons 2.825000e-02   p_joint 3.370000e-02

Joint ci ratio: 9.276711e-02	ci left: 3.287823e-02	ci right 3.609611e-02	k: 1723	n:50000
Cons ci ratio: 1.018746e-01	ci left: 2.729296e-02	ci right 3.024209e-02	k: 1437	n:50000
KS ci ratio: 3.697437e-02	ci left: 1.801355e-01	ci right 1.869413e-01	k: 9176	n:50000
KRTAP19-6   50000 perm   9 sec   (5275 perm/sec)   p_kst 1.835200e-01   p_cons 2.874000e-02   p_joint 3.446000e-02

Joint ci ratio: 8.499993e-02	ci left: 3.277634e-02	ci right 3.570227e-02	k: 2053	n:60000
Cons ci ratio: 9.326594e-02	ci left: 2.726453e-02	ci right 2.994799e-02	k: 1715	n:60000
KS ci ratio: 3.370114e-02	ci left: 1.808900e-01	ci right 1.871073e-01	k: 11039	n:60000
KRTAP19-6   60000 perm   12 sec   (5061 perm/sec)   p_kst 1.839833e-01   p_cons 2.858333e-02   p_joint 3.421667e-02

Outputting figure to mutsig2_images.part000000000094/KRTAP19-6.2_181_60000_0.18398_0.028583_0.034217.png
                gene_name: KRTAP19-6
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 96 percent done.
KRTAP26-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.305878e-03	ci left: 9.793064e-01	ci right 9.846075e-01	k: 9821	n:10000
Cons ci ratio: 2.519761e-02	ci left: 6.985753e-01	ci right 7.165037e-01	k: 7076	n:10000
KS ci ratio: 2.387550e-02	ci left: 7.205765e-01	ci right 7.380897e-01	k: 7294	n:10000
KRTAP26-1   10000 perm   3 sec   (3965 perm/sec)   p_kst 7.294000e-01   p_cons 7.076000e-01   p_joint 9.821000e-01

Outputting figure to mutsig2_images.part000000000094/KRTAP26-1.2_637_10000_0.7294_0.7076_0.9821.png
                gene_name: KRTAP26-1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000094
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 94 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1418>
Subject: Job 9893995: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1418>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000095> was used as the working directory.
Started at Sat Oct  6 00:15:45 2012
Results reported at Sat Oct  6 00:57:37 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000095.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000095.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 95  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000095.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2770.40 sec.
    Max Memory :      3609 MB
    Max Swap   :      5953 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
95
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 95
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 95: processing genes 8475 - 8564
Calculating significance of each gene.
Using projection method.
8475	LACTB	8.480415e-02
8476	LACTB2	6.069660e-01
8477	LAD1	1.885154e-01
8478	LAG3	3.306658e-01
8479	LAGE3	1
8480	LAIR1	2.922873e-01
8481	LAIR2	1.558079e-01
8482	LALBA	1.123374e-01
8483	LAMA1	1.031404e-01
8484	LAMA2	2.299128e-01
8485	LAMA3	5.537854e-01
8486	LAMA4	5.510643e-01
8487	LAMA5	1
In gene LAMB1 the following bins exceed PROBCAP:
    COAD-AA-3561	categ 6	N = 5493    n = 1	mu =   1.72e-07
8488	LAMB1	4.422728e-01
8489	LAMB2	9.914139e-01
8490	LAMB3	4.109550e-01
8491	LAMB4	1.971559e-01
8492	LAMC1	5.738549e-01
8493	LAMC2	5.861495e-01
8494	LAMC3	5.249298e-01
8495	LAMP1	8.674454e-01
8496	LAMP2	8.367481e-01
8497	LAMP3	3.116764e-01
8498	LANCL1	1.235928e-01
8499	LANCL2	4.499248e-01
8500	LANCL3	1
8501	LAP3	7.853526e-01
8502	LAPTM4A	6.327396e-01
8503	LAPTM4B	1
8504	LAPTM5	7.552631e-01
8505	LARGE	1.807203e-01
8506	LARP1	5.659773e-01
8507	LARP1B	1.568336e-01
8508	LARP4	7.059241e-01
8509	LARP4B	5.518530e-03
8510	LARP6	6.301008e-01
8511	LARP7	8.389213e-01
8512	LARS	7.602897e-01
8513	LARS2	8.558495e-01
8514	LAS1L	3.178393e-01
8515	LASP1	3.938283e-01
8516	LASS1	1
8517	LASS2	1
8518	LASS3	3.119808e-04
8519	LASS4	1
8520	LASS5	1.581977e-01
8521	LASS6	6.940467e-01
8522	LAT	7.395271e-01
8523	LAT2	6.475239e-01
8524	LATS1	1.828181e-01
8525	LATS2	9.239318e-01
8526	LAX1	8.933995e-01
8527	LAYN	2.258975e-01
8528	LBH	3.471264e-01
8529	LBP	7.493257e-01
8530	LBR	5.785066e-01
8531	LBX1	6.945393e-01
8532	LBX2	6.814982e-01
8533	LBXCOR1	8.705396e-01
8534	LCA5	1.864845e-02
8535	LCA5L	4.172636e-01
8536	LCAT	7.977799e-01
8537	LCE1A	5.219844e-02
8538	LCE1B	1.697224e-01
8539	LCE1C	1
8540	LCE1D	2.841557e-01
8541	LCE1E	1
8542	LCE1F	2.127886e-01
8543	LCE2A	1
8544	LCE2B	1
8545	LCE2C	1.516479e-01
8546	LCE2D	3.266247e-01
8547	LCE3A	1
8548	LCE3B	1
8549	LCE3C	1
8550	LCE3D	3.701178e-02
8551	LCE3E	1
8552	LCE4A	1.388084e-01
8553	LCE5A	1
8554	LCK	6.750191e-01
8555	LCLAT1	6.259313e-01
8556	LCMT1	7.007480e-02
8557	LCMT2	9.527092e-01
8558	LCN1	1
8559	LCN10	1
8560	LCN12	1
8561	LCN15	1
8562	LCN2	1
8563	LCN6	1
8564	LCN8	7.189203e-01
Done

Running MutSig 2:
Scatter job 95: processing genes 8475 - 8564
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LAMA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.721990e-02	ci left: 3.982459e-01	ci right 4.176078e-01	k: 4079	n:10000
Cons ci ratio: 2.310842e-02	ci left: 7.334059e-01	ci right 7.506529e-01	k: 7421	n:10000
KS ci ratio: 6.723193e-02	ci left: 2.450955e-01	ci right 2.622482e-01	k: 2536	n:10000
LAMA2   10000 perm   4 sec   (2228 perm/sec)   p_kst 2.536000e-01   p_cons 7.421000e-01   p_joint 4.079000e-01

Outputting figure to mutsig2_images.part000000000095/LAMA2.25_9629_10000_0.2536_0.7421_0.4079.png
                gene_name: LAMA2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 2 percent done.
LAMA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.664326e-02	ci left: 8.400990e-01	ci right 8.542981e-01	k: 8473	n:10000
Cons ci ratio: 4.522581e-02	ci left: 4.191717e-01	ci right 4.386698e-01	k: 4289	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
LAMA1   10000 perm   4 sec   (2601 perm/sec)   p_kst 1   p_cons 4.289000e-01   p_joint 8.473000e-01

Outputting figure to mutsig2_images.part000000000095/LAMA1.24_9480_10000_1_0.4289_0.8473.png
                gene_name: LAMA1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 4 percent done.
LAMA3
Processing conservation and coverage...
95% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.152849e-02	ci left: 4.612762e-01	ci right 4.809407e-01	k: 4711	n:10000
Cons ci ratio: 6.396856e-02	ci left: 2.641865e-01	ci right 2.817460e-01	k: 2729	n:10000
KS ci ratio: 4.349652e-02	ci left: 4.383194e-01	ci right 4.579108e-01	k: 4481	n:10000
LAMA3   10000 perm   4 sec   (2509 perm/sec)   p_kst 4.481000e-01   p_cons 2.729000e-01   p_joint 4.711000e-01

Outputting figure to mutsig2_images.part000000000095/LAMA3.18_10477_10000_0.4481_0.2729_0.4711.png
                gene_name: LAMA3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 7 percent done.
LAMB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.430514e-02	ci left: 7.134081e-01	ci right 7.310622e-01	k: 7223	n:10000
Cons ci ratio: 7.154130e-02	ci left: 2.225711e-01	ci right 2.391859e-01	k: 2308	n:10000
KS ci ratio: 2.081881e-02	ci left: 7.717500e-01	ci right 7.880866e-01	k: 7800	n:10000
LAMB4   10000 perm   3 sec   (3455 perm/sec)   p_kst 7.800000e-01   p_cons 2.308000e-01   p_joint 7.223000e-01

Outputting figure to mutsig2_images.part000000000095/LAMB4.16_5418_10000_0.78_0.2308_0.7223.png
                gene_name: LAMB4
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 9 percent done.
LARP4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.369573e-02	ci left: 2.658691e-01	ci right 2.834624e-01	k: 2746	n:10000
Cons ci ratio: 1.065035e-01	ci left: 1.129108e-01	ci right 1.257119e-01	k: 1192	n:10000
KS ci ratio: 3.006410e-02	ci left: 6.200485e-01	ci right 6.390760e-01	k: 6296	n:10000
LARP4B   10000 perm   2 sec   (4484 perm/sec)   p_kst 6.296000e-01   p_cons 1.192000e-01   p_joint 2.746000e-01

Joint ci ratio: 5.044583e-02	ci left: 2.260156e-01	ci right 2.377624e-01	k: 4637	n:20000
Cons ci ratio: 7.340230e-02	ci left: 1.202003e-01	ci right 1.294091e-01	k: 2495	n:20000
KS ci ratio: 2.138733e-02	ci left: 6.200540e-01	ci right 6.335092e-01	k: 12536	n:20000
LARP4B   20000 perm   5 sec   (4065 perm/sec)   p_kst 6.268000e-01   p_cons 1.247500e-01   p_joint 2.318500e-01

Outputting figure to mutsig2_images.part000000000095/LARP4B.12_2285_20000_0.6268_0.12475_0.23185.png
                gene_name: LARP4B
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 11 percent done.
LAMA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.665763e-02	ci left: 4.040236e-01	ci right 4.234267e-01	k: 4137	n:10000
Cons ci ratio: 7.383106e-02	ci left: 2.117161e-01	ci right 2.280474e-01	k: 2198	n:10000
KS ci ratio: 5.200715e-02	ci left: 3.527710e-01	ci right 3.717094e-01	k: 3622	n:10000
LAMA4   10000 perm   3 sec   (3545 perm/sec)   p_kst 3.622000e-01   p_cons 2.198000e-01   p_joint 4.137000e-01

Outputting figure to mutsig2_images.part000000000095/LAMA4.11_5792_10000_0.3622_0.2198_0.4137.png
                gene_name: LAMA4
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 13 percent done.
LAMC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
Cons ci ratio: 7.391724e-02	ci left: 2.113215e-01	ci right 2.276422e-01	k: 2194	n:10000
KS ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
LAMC1   10000 perm   3 sec   (3874 perm/sec)   p_kst 1.030000e-02   p_cons 2.194000e-01   p_joint 1.160000e-02

Joint ci ratio: 2.194697e-01	ci left: 1.397554e-02	ci right 1.746732e-02	k: 313	n:20000
Cons ci ratio: 5.264454e-02	ci left: 2.113037e-01	ci right 2.227787e-01	k: 4340	n:20000
KS ci ratio: 2.892375e-01	ci left: 7.784307e-03	ci right 1.046133e-02	k: 181	n:20000
LAMC1   20000 perm   6 sec   (3562 perm/sec)   p_kst 9.050000e-03   p_cons 2.170000e-01   p_joint 1.565000e-02

Joint ci ratio: 2.306832e-01	ci left: 8.433355e-03	ci right 1.066317e-02	k: 285	n:30000
Cons ci ratio: 4.522620e-02	ci left: 1.957175e-01	ci right 2.048073e-01	k: 6007	n:30000
KS ci ratio: 2.357281e-01	ci left: 8.056540e-03	ci right 1.024011e-02	k: 273	n:30000
LAMC1   30000 perm   9 sec   (3439 perm/sec)   p_kst 9.100000e-03   p_cons 2.002333e-01   p_joint 9.500000e-03

Joint ci ratio: 1.529780e-01	ci left: 1.491337e-02	ci right 1.740758e-02	k: 645	n:40000
Cons ci ratio: 3.942783e-02	ci left: 1.942284e-01	ci right 2.020654e-01	k: 7925	n:40000
KS ci ratio: 2.012037e-01	ci left: 8.453845e-03	ci right 1.036839e-02	k: 375	n:40000
LAMC1   40000 perm   12 sec   (3359 perm/sec)   p_kst 9.375000e-03   p_cons 1.981250e-01   p_joint 1.612500e-02

Joint ci ratio: 1.608416e-01	ci left: 1.079509e-02	ci right 1.270222e-02	k: 586	n:50000
Cons ci ratio: 3.530648e-02	ci left: 1.942763e-01	ci right 2.012788e-01	k: 9888	n:50000
KS ci ratio: 1.811333e-01	ci left: 8.439034e-03	ci right 1.013867e-02	k: 463	n:50000
LAMC1   50000 perm   15 sec   (3287 perm/sec)   p_kst 9.260000e-03   p_cons 1.977600e-01   p_joint 1.172000e-02

Joint ci ratio: 1.297551e-01	ci left: 1.401031e-02	ci right 1.597035e-02	k: 898	n:60000
Cons ci ratio: 3.215902e-02	ci left: 1.952816e-01	ci right 2.016809e-01	k: 11908	n:60000
KS ci ratio: 1.654716e-01	ci left: 8.499483e-03	ci right 1.004854e-02	k: 555	n:60000
LAMC1   60000 perm   19 sec   (3229 perm/sec)   p_kst 9.250000e-03   p_cons 1.984667e-01   p_joint 1.496667e-02

Joint ci ratio: 9.201551e-02	ci left: 2.410736e-02	ci right 2.644650e-02	k: 1768	n:70000
Cons ci ratio: 2.980405e-02	ci left: 1.951955e-01	ci right 2.011153e-01	k: 13870	n:70000
KS ci ratio: 1.495922e-01	ci left: 8.987184e-03	ci right 1.045389e-02	k: 679	n:70000
LAMC1   70000 perm   22 sec   (3177 perm/sec)   p_kst 9.700000e-03   p_cons 1.981429e-01   p_joint 2.525714e-02

Joint ci ratio: 9.500425e-02	ci left: 1.984663e-02	ci right 2.183833e-02	k: 1666	n:80000
Cons ci ratio: 2.789623e-02	ci left: 1.951936e-01	ci right 2.007283e-01	k: 15836	n:80000
KS ci ratio: 1.398529e-01	ci left: 9.044482e-03	ci right 1.041642e-02	k: 777	n:80000
LAMC1   80000 perm   26 sec   (3128 perm/sec)   p_kst 9.712500e-03   p_cons 1.979500e-01   p_joint 2.082500e-02

Joint ci ratio: 1.158261e-01	ci left: 1.183830e-02	ci right 1.330448e-02	k: 1130	n:90000
Cons ci ratio: 2.630417e-02	ci left: 1.953123e-01	ci right 2.005294e-01	k: 17812	n:90000
KS ci ratio: 1.298653e-01	ci left: 9.370982e-03	ci right 1.068311e-02	k: 901	n:90000
LAMC1   90000 perm   29 sec   (3079 perm/sec)   p_kst 1.001111e-02   p_cons 1.979111e-01   p_joint 1.255556e-02

Joint ci ratio: 1.218706e-01	ci left: 9.615570e-03	ci right 1.087308e-02	k: 1023	n:100000
Cons ci ratio: 2.494351e-02	ci left: 1.955837e-01	ci right 2.005338e-01	k: 19805	n:100000
KS ci ratio: 1.229055e-01	ci left: 9.450726e-03	ci right 1.069794e-02	k: 1006	n:100000
LAMC1   100000 perm   33 sec   (3033 perm/sec)   p_kst 1.006000e-02   p_cons 1.980500e-01   p_joint 1.023000e-02

Joint ci ratio: 1.184177e-01	ci left: 9.279211e-03	ci right 1.045594e-02	k: 1084	n:110000
Cons ci ratio: 2.374982e-02	ci left: 1.961372e-01	ci right 2.008605e-01	k: 21834	n:110000
KS ci ratio: 1.178704e-01	ci left: 9.367458e-03	ci right 1.054950e-02	k: 1094	n:110000
LAMC1   110000 perm   37 sec   (2989 perm/sec)   p_kst 9.945455e-03   p_cons 1.984909e-01   p_joint 9.854545e-03

Joint ci ratio: 9.157030e-02	ci left: 1.435242e-02	ci right 1.573783e-02	k: 1804	n:120000
Cons ci ratio: 2.131983e-02	ci left: 2.174513e-01	ci right 2.221456e-01	k: 26375	n:120000
KS ci ratio: 1.122157e-01	ci left: 9.501451e-03	ci right 1.063908e-02	k: 1207	n:120000
LAMC1   120000 perm   41 sec   (2948 perm/sec)   p_kst 1.005833e-02   p_cons 2.197917e-01   p_joint 1.503333e-02

Joint ci ratio: 8.917581e-02	ci left: 1.399260e-02	ci right 1.530611e-02	k: 1903	n:130000
Cons ci ratio: 2.047379e-02	ci left: 2.177046e-01	ci right 2.222156e-01	k: 28594	n:130000
KS ci ratio: 1.073860e-01	ci left: 9.600999e-03	ci right 1.069794e-02	k: 1318	n:130000
LAMC1   130000 perm   45 sec   (2906 perm/sec)   p_kst 1.013846e-02   p_cons 2.199538e-01   p_joint 1.463846e-02

Joint ci ratio: 1.068543e-01	ci left: 9.012387e-03	ci right 1.003665e-02	k: 1332	n:140000
Cons ci ratio: 2.064177e-02	ci left: 2.027171e-01	ci right 2.069523e-01	k: 28676	n:140000
KS ci ratio: 1.038668e-01	ci left: 9.548028e-03	ci right 1.060098e-02	k: 1409	n:140000
LAMC1   140000 perm   49 sec   (2866 perm/sec)   p_kst 1.006429e-02   p_cons 2.048286e-01   p_joint 9.514286e-03

Joint ci ratio: 1.033852e-01	ci left: 9.002276e-03	ci right 9.990157e-03	k: 1423	n:150000
Cons ci ratio: 1.994444e-02	ci left: 2.027469e-01	ci right 2.068379e-01	k: 30718	n:150000
KS ci ratio: 1.000348e-01	ci left: 9.626149e-03	ci right 1.064625e-02	k: 1519	n:150000
LAMC1   150000 perm   53 sec   (2829 perm/sec)   p_kst 1.012667e-02   p_cons 2.047867e-01   p_joint 9.486667e-03

Joint ci ratio: 9.901985e-02	ci left: 9.219440e-03	ci right 1.018595e-02	k: 1551	n:160000
Cons ci ratio: 1.931184e-02	ci left: 2.027999e-01	ci right 2.067608e-01	k: 32764	n:160000
KS ci ratio: 9.714118e-02	ci left: 9.585327e-03	ci right 1.057005e-02	k: 1611	n:160000
LAMC1   160000 perm   57 sec   (2797 perm/sec)   p_kst 1.006875e-02   p_cons 2.047750e-01   p_joint 9.693750e-03

Outputting figure to mutsig2_images.part000000000095/LAMC1.11_4942_160000_0.010069_0.20478_0.0096937.png
                gene_name: LAMC1
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0096 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.0097 
     ci_joint_bounds_left: 0.0092 
    ci_joint_bounds_right: 0.010 

Current progress: 15 percent done.
LASS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.422220e-01	ci left: 6.555836e-02	ci right 7.569349e-02	k: 705	n:10000
Cons ci ratio: 1.710413e-01	ci left: 4.561810e-02	ci right 5.424649e-02	k: 498	n:10000
KS ci ratio: 1.337476e-01	ci left: 7.378639e-02	ci right 8.446032e-02	k: 790	n:10000
LASS3   10000 perm   2 sec   (5663 perm/sec)   p_kst 7.900000e-02   p_cons 4.980000e-02   p_joint 7.050000e-02

Joint ci ratio: 8.942667e-02	ci left: 8.371703e-02	ci right 9.160333e-02	k: 1752	n:20000
Cons ci ratio: 1.114503e-01	ci left: 5.499471e-02	ci right 6.153445e-02	k: 1164	n:20000
KS ci ratio: 9.361530e-02	ci left: 7.681453e-02	ci right 8.440792e-02	k: 1611	n:20000
LASS3   20000 perm   4 sec   (5001 perm/sec)   p_kst 8.055000e-02   p_cons 5.820000e-02   p_joint 8.760000e-02

Joint ci ratio: 9.588875e-02	ci left: 5.023097e-02	ci right 5.532274e-02	k: 1582	n:30000
Cons ci ratio: 9.653424e-02	ci left: 4.957953e-02	ci right 5.464099e-02	k: 1562	n:30000
KS ci ratio: 7.641991e-02	ci left: 7.754365e-02	ci right 8.373785e-02	k: 2418	n:30000
LASS3   30000 perm   6 sec   (4748 perm/sec)   p_kst 8.060000e-02   p_cons 5.206667e-02   p_joint 5.273333e-02

Outputting figure to mutsig2_images.part000000000095/LASS3.11_1192_30000_0.0806_0.052067_0.052733.png
                gene_name: LASS3
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.055 

Current progress: 17 percent done.
LAMC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.571331e-02	ci left: 8.546766e-01	ci right 8.683121e-01	k: 8616	n:10000
Cons ci ratio: 2.878148e-02	ci left: 6.402572e-01	ci right 6.590556e-01	k: 6497	n:10000
KS ci ratio: 3.077061e-02	ci left: 6.090969e-01	ci right 6.282339e-01	k: 6187	n:10000
LAMC2   10000 perm   2 sec   (4555 perm/sec)   p_kst 6.187000e-01   p_cons 6.497000e-01   p_joint 8.616000e-01

Outputting figure to mutsig2_images.part000000000095/LAMC2.10_3682_10000_0.6187_0.6497_0.8616.png
                gene_name: LAMC2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 20 percent done.
LATS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.520741e-01	ci left: 5.754436e-02	ci right 6.711256e-02	k: 622	n:10000
Cons ci ratio: 8.627786e-02	ci left: 1.636672e-01	ci right 1.785250e-01	k: 1710	n:10000
KS ci ratio: 1.589924e-01	ci left: 5.272798e-02	ci right 6.193202e-02	k: 572	n:10000
LATS1   10000 perm   2 sec   (4372 perm/sec)   p_kst 5.720000e-02   p_cons 1.710000e-01   p_joint 6.220000e-02

Joint ci ratio: 1.118587e-01	ci left: 5.460525e-02	ci right 6.112403e-02	k: 1156	n:20000
Cons ci ratio: 5.745505e-02	ci left: 1.833474e-01	ci right 1.942433e-01	k: 3775	n:20000
KS ci ratio: 1.090359e-01	ci left: 5.738108e-02	ci right 6.404735e-02	k: 1213	n:20000
LATS1   20000 perm   5 sec   (3969 perm/sec)   p_kst 6.065000e-02   p_cons 1.887500e-01   p_joint 5.780000e-02

Joint ci ratio: 9.739180e-02	ci left: 4.873281e-02	ci right 5.375454e-02	k: 1536	n:30000
Cons ci ratio: 4.666341e-02	ci left: 1.859707e-01	ci right 1.948894e-01	k: 5712	n:30000
KS ci ratio: 8.866577e-02	ci left: 5.844827e-02	ci right 6.390376e-02	k: 1834	n:30000
LATS1   30000 perm   8 sec   (3817 perm/sec)   p_kst 6.113333e-02   p_cons 1.904000e-01   p_joint 5.120000e-02

Outputting figure to mutsig2_images.part000000000095/LATS1.10_3421_30000_0.061133_0.1904_0.0512.png
                gene_name: LATS1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.054 

Current progress: 22 percent done.
LAMB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.137775e-01	ci left: 1.000319e-01	ci right 1.121987e-01	k: 1060	n:10000
Cons ci ratio: 2.469922e-02	ci left: 7.068480e-01	ci right 7.246262e-01	k: 7158	n:10000
KS ci ratio: 1.753367e-01	ci left: 4.341336e-02	ci right 5.185268e-02	k: 475	n:10000
LAMB3   10000 perm   2 sec   (4407 perm/sec)   p_kst 4.750000e-02   p_cons 7.158000e-01   p_joint 1.060000e-01

Joint ci ratio: 6.964153e-02	ci left: 1.319671e-01	ci right 1.415388e-01	k: 2734	n:20000
Cons ci ratio: 1.757916e-02	ci left: 7.068260e-01	ci right 7.194120e-01	k: 14263	n:20000
KS ci ratio: 1.239162e-01	ci left: 4.469010e-02	ci right 5.064229e-02	k: 952	n:20000
LAMB3   20000 perm   5 sec   (3990 perm/sec)   p_kst 4.760000e-02   p_cons 7.131500e-01   p_joint 1.367000e-01

Joint ci ratio: 6.232473e-02	ci left: 1.128573e-01	ci right 1.201505e-01	k: 3494	n:30000
Cons ci ratio: 1.470315e-02	ci left: 6.979942e-01	ci right 7.083664e-01	k: 21096	n:30000
KS ci ratio: 1.011593e-01	ci left: 4.525041e-02	ci right 5.010433e-02	k: 1429	n:30000
LAMB3   30000 perm   8 sec   (3819 perm/sec)   p_kst 4.763333e-02   p_cons 7.032000e-01   p_joint 1.164667e-01

Joint ci ratio: 5.922812e-02	ci left: 9.576915e-02	ci right 1.016393e-01	k: 3947	n:40000
Cons ci ratio: 1.270210e-02	ci left: 6.997252e-01	ci right 7.086951e-01	k: 28169	n:40000
KS ci ratio: 8.487653e-02	ci left: 4.847227e-02	ci right 5.279327e-02	k: 2024	n:40000
LAMB3   40000 perm   11 sec   (3717 perm/sec)   p_kst 5.060000e-02   p_cons 7.042250e-01   p_joint 9.867500e-02

Outputting figure to mutsig2_images.part000000000095/LAMB3.9_3607_40000_0.0506_0.70422_0.098675.png
                gene_name: LAMB3
               theta_stop: 0.085 
                    nperm: 40000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 24 percent done.
LCA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.874346e-02	ci left: 2.989585e-01	ci right 3.171535e-01	k: 3080	n:10000
Cons ci ratio: 3.351839e-02	ci left: 5.678475e-01	ci right 5.873073e-01	k: 5776	n:10000
KS ci ratio: 9.526235e-02	ci left: 1.378591e-01	ci right 1.517485e-01	k: 1447	n:10000
LCA5   10000 perm   2 sec   (4693 perm/sec)   p_kst 1.447000e-01   p_cons 5.776000e-01   p_joint 3.080000e-01

Outputting figure to mutsig2_images.part000000000095/LCA5.9_2122_10000_0.1447_0.5776_0.308.png
                gene_name: LCA5
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 26 percent done.
LAMB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.194324e-02	ci left: 5.912235e-01	ci right 6.105177e-01	k: 6009	n:10000
Cons ci ratio: 3.402236e-02	ci left: 5.605282e-01	ci right 5.800308e-01	k: 5703	n:10000
KS ci ratio: 4.126282e-02	ci left: 4.644718e-01	ci right 4.841432e-01	k: 4743	n:10000
LAMB1   10000 perm   3 sec   (3754 perm/sec)   p_kst 4.743000e-01   p_cons 5.703000e-01   p_joint 6.009000e-01

Outputting figure to mutsig2_images.part000000000095/LAMB1.8_5493_10000_0.4743_0.5703_0.6009.png
                gene_name: LAMB1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 28 percent done.
LAMC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.223032e-02	ci left: 5.869078e-01	ci right 6.062359e-01	k: 5966	n:10000
Cons ci ratio: 2.880677e-02	ci left: 6.398548e-01	ci right 6.586581e-01	k: 6493	n:10000
KS ci ratio: 5.016777e-02	ci left: 3.694779e-01	ci right 3.885927e-01	k: 3790	n:10000
LAMC3   10000 perm   2 sec   (4124 perm/sec)   p_kst 3.790000e-01   p_cons 6.493000e-01   p_joint 5.966000e-01

Outputting figure to mutsig2_images.part000000000095/LAMC3.8_4840_10000_0.379_0.6493_0.5966.png
                gene_name: LAMC3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 30 percent done.
LARGE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.102486e-02	ci left: 7.683064e-01	ci right 7.847323e-01	k: 7766	n:10000
KS ci ratio: 2.506374e-02	ci left: 7.007944e-01	ci right 7.186833e-01	k: 7098	n:10000
LARGE   10000 perm   2 sec   (5541 perm/sec)   p_kst 7.098000e-01   p_cons 7.766000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LARGE.7_2327_10000_0.7098_0.7766_1.png
                gene_name: LARGE
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
LCA5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.224432e-02	ci left: 3.506835e-01	ci right 3.695981e-01	k: 3601	n:10000
Cons ci ratio: 3.229731e-02	ci left: 5.859043e-01	ci right 6.052400e-01	k: 5956	n:10000
KS ci ratio: 8.493376e-02	ci left: 1.680897e-01	ci right 1.830998e-01	k: 1755	n:10000
LCA5L   10000 perm   2 sec   (5091 perm/sec)   p_kst 1.755000e-01   p_cons 5.956000e-01   p_joint 3.601000e-01

Outputting figure to mutsig2_images.part000000000095/LCA5L.7_2041_10000_0.1755_0.5956_0.3601.png
                gene_name: LCA5L
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 35 percent done.
LARP1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.956342e-02	ci left: 6.278885e-01	ci right 6.468314e-01	k: 6374	n:10000
Cons ci ratio: 6.990893e-02	ci left: 2.307670e-01	ci right 2.475852e-01	k: 2391	n:10000
KS ci ratio: 2.840946e-02	ci left: 6.461925e-01	ci right 6.649168e-01	k: 6556	n:10000
LARP1   10000 perm   2 sec   (4661 perm/sec)   p_kst 6.556000e-01   p_cons 2.391000e-01   p_joint 6.374000e-01

Outputting figure to mutsig2_images.part000000000095/LARP1.5_3136_10000_0.6556_0.2391_0.6374.png
                gene_name: LARP1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 37 percent done.
LARP1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.743559e-02	ci left: 3.960547e-01	ci right 4.154003e-01	k: 4057	n:10000
Cons ci ratio: 1.962522e-02	ci left: 7.916175e-01	ci right 8.074076e-01	k: 7996	n:10000
KS ci ratio: 8.018115e-02	ci left: 1.851083e-01	ci right 2.006710e-01	k: 1928	n:10000
LARP1B   10000 perm   2 sec   (4510 perm/sec)   p_kst 1.928000e-01   p_cons 7.996000e-01   p_joint 4.057000e-01

Outputting figure to mutsig2_images.part000000000095/LARP1B.6_2951_10000_0.1928_0.7996_0.4057.png
                gene_name: LARP1B
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 39 percent done.
LAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.793293e-02	ci left: 6.538404e-01	ci right 6.724645e-01	k: 6632	n:10000
Cons ci ratio: 7.625897e-02	ci left: 2.009680e-01	ci right 2.170019e-01	k: 2089	n:10000
KS ci ratio: 7.799618e-03	ci left: 9.580656e-01	ci right 9.656623e-01	k: 9620	n:10000
LAD1   10000 perm   2 sec   (5607 perm/sec)   p_kst 9.620000e-01   p_cons 2.089000e-01   p_joint 6.632000e-01

Outputting figure to mutsig2_images.part000000000095/LAD1.5_1594_10000_0.962_0.2089_0.6632.png
                gene_name: LAD1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 41 percent done.
LAMB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.233711e-02	ci left: 4.516917e-01	ci right 4.713307e-01	k: 4615	n:10000
Cons ci ratio: 3.147915e-02	ci left: 5.982508e-01	ci right 6.174863e-01	k: 6079	n:10000
KS ci ratio: 6.284356e-02	ci left: 2.712149e-01	ci right 2.889134e-01	k: 2800	n:10000
LAMB2   10000 perm   3 sec   (3901 perm/sec)   p_kst 2.800000e-01   p_cons 6.079000e-01   p_joint 4.615000e-01

Outputting figure to mutsig2_images.part000000000095/LAMB2.5_5525_10000_0.28_0.6079_0.4615.png
                gene_name: LAMB2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 43 percent done.
LARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.497778e-03	ci left: 9.779161e-01	ci right 9.833989e-01	k: 9808	n:10000
Cons ci ratio: 5.598207e-02	ci left: 3.196927e-01	ci right 3.382070e-01	k: 3289	n:10000
KS ci ratio: 2.566713e-02	ci left: 6.908102e-01	ci right 7.088733e-01	k: 6999	n:10000
LARS   10000 perm   2 sec   (4487 perm/sec)   p_kst 6.999000e-01   p_cons 3.289000e-01   p_joint 9.808000e-01

Outputting figure to mutsig2_images.part000000000095/LARS.5_3659_10000_0.6999_0.3289_0.9808.png
                gene_name: LARS
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 46 percent done.
LBR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.021046e-02	ci left: 4.773583e-01	ci right 4.970491e-01	k: 4872	n:10000
Cons ci ratio: 4.982851e-02	ci left: 3.726615e-01	ci right 3.918072e-01	k: 3822	n:10000
KS ci ratio: 3.022542e-02	ci left: 6.175362e-01	ci right 6.365898e-01	k: 6271	n:10000
LBR   10000 perm   2 sec   (5152 perm/sec)   p_kst 6.271000e-01   p_cons 3.822000e-01   p_joint 4.872000e-01

Outputting figure to mutsig2_images.part000000000095/LBR.5_1900_10000_0.6271_0.3822_0.4872.png
                gene_name: LBR
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 48 percent done.
LANCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.931253e-02	ci left: 7.967918e-01	ci right 8.124303e-01	k: 8047	n:10000
KS ci ratio: 2.675954e-02	ci left: 6.728712e-01	ci right 6.912227e-01	k: 6821	n:10000
LANCL1   10000 perm   2 sec   (5934 perm/sec)   p_kst 6.821000e-01   p_cons 8.047000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LANCL1.4_1236_10000_0.6821_0.8047_1.png
                gene_name: LANCL1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
LAS1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.926994e-02	ci left: 6.325134e-01	ci right 6.514038e-01	k: 6420	n:10000
Cons ci ratio: 7.304386e-02	ci left: 2.153664e-01	ci right 2.317949e-01	k: 2235	n:10000
KS ci ratio: 1.314294e-02	ci left: 8.929274e-01	ci right 9.048391e-01	k: 8990	n:10000
LAS1L   10000 perm   2 sec   (5243 perm/sec)   p_kst 8.990000e-01   p_cons 2.235000e-01   p_joint 6.420000e-01

Outputting figure to mutsig2_images.part000000000095/LAS1L.4_2261_10000_0.899_0.2235_0.642.png
                gene_name: LAS1L
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 52 percent done.
LATS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.648225e-02	ci left: 8.426459e-01	ci right 8.567497e-01	k: 8498	n:10000
Cons ci ratio: 4.540162e-02	ci left: 4.172776e-01	ci right 4.367649e-01	k: 4270	n:10000
KS ci ratio: 2.285498e-02	ci left: 7.376507e-01	ci right 7.548057e-01	k: 7463	n:10000
LATS2   10000 perm   2 sec   (5032 perm/sec)   p_kst 7.463000e-01   p_cons 4.270000e-01   p_joint 8.498000e-01

Outputting figure to mutsig2_images.part000000000095/LATS2.4_3295_10000_0.7463_0.427_0.8498.png
                gene_name: LATS2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 54 percent done.
LACTB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.375610e-01	ci left: 6.991195e-02	ci right 8.033717e-02	k: 750	n:10000
Cons ci ratio: 1.214091e-01	ci left: 8.864084e-02	ci right 1.001967e-01	k: 943	n:10000
KS ci ratio: 1.143206e-01	ci left: 9.915477e-02	ci right 1.112763e-01	k: 1051	n:10000
LACTB   10000 perm   2 sec   (5806 perm/sec)   p_kst 1.051000e-01   p_cons 9.430000e-02   p_joint 7.500000e-02

Joint ci ratio: 9.620311e-02	ci left: 7.295085e-02	ci right 8.037278e-02	k: 1532	n:20000
Cons ci ratio: 8.617888e-02	ci left: 8.969559e-02	ci right 9.782296e-02	k: 1874	n:20000
KS ci ratio: 8.022195e-02	ci left: 1.023554e-01	ci right 1.109593e-01	k: 2132	n:20000
LACTB   20000 perm   4 sec   (5055 perm/sec)   p_kst 1.066000e-01   p_cons 9.370000e-02   p_joint 7.660000e-02

Outputting figure to mutsig2_images.part000000000095/LACTB.3_1672_20000_0.1066_0.0937_0.0766.png
                gene_name: LACTB
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.080 

Current progress: 57 percent done.
LAG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.649454e-02	ci left: 4.057173e-01	ci right 4.251320e-01	k: 4154	n:10000
KS ci ratio: 1.873938e-02	ci left: 8.062326e-01	ci right 8.215841e-01	k: 8140	n:10000
LAG3   10000 perm   2 sec   (6012 perm/sec)   p_kst 8.140000e-01   p_cons 4.154000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LAG3.3_1610_10000_0.814_0.4154_1.png
                gene_name: LAG3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
LAIR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.026381e-02	ci left: 3.685825e-01	ci right 3.876885e-01	k: 3781	n:10000
Cons ci ratio: 9.687168e-02	ci left: 1.338424e-01	ci right 1.475676e-01	k: 1406	n:10000
KS ci ratio: 3.376626e-02	ci left: 5.642377e-01	ci right 5.837192e-01	k: 5740	n:10000
LAIR1   10000 perm   1 sec   (6681 perm/sec)   p_kst 5.740000e-01   p_cons 1.406000e-01   p_joint 3.781000e-01

Outputting figure to mutsig2_images.part000000000095/LAIR1.3_904_10000_0.574_0.1406_0.3781.png
                gene_name: LAIR1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 61 percent done.
LAMP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.784775e-03	ci left: 9.675208e-01	ci right 9.742012e-01	k: 9710	n:10000
Cons ci ratio: 2.782048e-02	ci left: 6.556521e-01	ci right 6.742517e-01	k: 6650	n:10000
KS ci ratio: 3.167756e-02	ci left: 5.952389e-01	ci right 6.145000e-01	k: 6049	n:10000
LAMP3   10000 perm   2 sec   (6336 perm/sec)   p_kst 6.049000e-01   p_cons 6.650000e-01   p_joint 9.710000e-01

Outputting figure to mutsig2_images.part000000000095/LAMP3.3_1275_10000_0.6049_0.665_0.971.png
                gene_name: LAMP3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 63 percent done.
LANCL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.414085e-02	ci left: 8.784825e-01	ci right 8.910923e-01	k: 8849	n:10000
Cons ci ratio: 3.452240e-03	ci left: 9.904966e-01	ci right 9.940075e-01	k: 9924	n:10000
KS ci ratio: 2.651309e-02	ci left: 6.769010e-01	ci right 6.951905e-01	k: 6861	n:10000
LANCL2   10000 perm   2 sec   (6266 perm/sec)   p_kst 6.861000e-01   p_cons 9.924000e-01   p_joint 8.849000e-01

Outputting figure to mutsig2_images.part000000000095/LANCL2.3_1389_10000_0.6861_0.9924_0.8849.png
                gene_name: LANCL2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 65 percent done.
LARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.597175e-02	ci left: 5.329749e-01	ci right 5.526002e-01	k: 5428	n:10000
Cons ci ratio: 6.192151e-02	ci left: 2.771565e-01	ci right 2.949683e-01	k: 2860	n:10000
KS ci ratio: 2.007111e-02	ci left: 7.842146e-01	ci right 8.002148e-01	k: 7923	n:10000
LARS2   10000 perm   2 sec   (5781 perm/sec)   p_kst 7.923000e-01   p_cons 2.860000e-01   p_joint 5.428000e-01

Outputting figure to mutsig2_images.part000000000095/LARS2.3_2792_10000_0.7923_0.286_0.5428.png
                gene_name: LARS2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 67 percent done.
LASS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.380955e-02	ci left: 2.118147e-01	ci right 2.281487e-01	k: 2199	n:10000
Cons ci ratio: 6.918678e-02	ci left: 2.345208e-01	ci right 2.514292e-01	k: 2429	n:10000
KS ci ratio: 1.261899e-01	ci left: 8.242097e-02	ci right 9.362038e-02	k: 879	n:10000
LASS5   10000 perm   1 sec   (6801 perm/sec)   p_kst 8.790000e-02   p_cons 2.429000e-01   p_joint 2.199000e-01

Joint ci ratio: 7.816569e-02	ci left: 1.073170e-01	ci right 1.160963e-01	k: 2233	n:20000
Cons ci ratio: 4.920375e-02	ci left: 2.349369e-01	ci right 2.468385e-01	k: 4817	n:20000
KS ci ratio: 8.948263e-02	ci left: 8.361907e-02	ci right 9.150132e-02	k: 1750	n:20000
LASS5   20000 perm   3 sec   (5913 perm/sec)   p_kst 8.750000e-02   p_cons 2.408500e-01   p_joint 1.116500e-01

Outputting figure to mutsig2_images.part000000000095/LASS5.3_1219_20000_0.0875_0.24085_0.11165.png
                gene_name: LASS5
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 70 percent done.
LASS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.462753e-01	ci left: 6.207973e-02	ci right 7.197432e-02	k: 669	n:10000
Cons ci ratio: 7.899090e-02	ci left: 1.897361e-01	ci right 2.054405e-01	k: 1975	n:10000
KS ci ratio: 1.677072e-01	ci left: 4.744132e-02	ci right 5.622208e-02	k: 517	n:10000
LASS6   10000 perm   2 sec   (6158 perm/sec)   p_kst 5.170000e-02   p_cons 1.975000e-01   p_joint 6.690000e-02

Joint ci ratio: 8.442632e-02	ci left: 9.317735e-02	ci right 1.014401e-01	k: 1945	n:20000
Cons ci ratio: 5.523804e-02	ci left: 1.955637e-01	ci right 2.067233e-01	k: 4022	n:20000
KS ci ratio: 1.233734e-01	ci left: 4.507829e-02	ci right 5.105398e-02	k: 960	n:20000
LASS6   20000 perm   4 sec   (5471 perm/sec)   p_kst 4.800000e-02   p_cons 2.011000e-01   p_joint 9.725000e-02

Joint ci ratio: 8.215595e-02	ci left: 6.762830e-02	ci right 7.345520e-02	k: 2115	n:30000
Cons ci ratio: 4.552963e-02	ci left: 1.936026e-01	ci right 2.026559e-01	k: 5943	n:30000
KS ci ratio: 1.004970e-01	ci left: 4.583599e-02	ci right 5.071864e-02	k: 1447	n:30000
LASS6   30000 perm   6 sec   (5206 perm/sec)   p_kst 4.823333e-02   p_cons 1.981000e-01   p_joint 7.050000e-02

Joint ci ratio: 8.966727e-02	ci left: 4.355169e-02	ci right 4.766461e-02	k: 1823	n:40000
Cons ci ratio: 4.101591e-02	ci left: 1.820732e-01	ci right 1.897224e-01	k: 7435	n:40000
KS ci ratio: 8.830621e-02	ci left: 4.487300e-02	ci right 4.904308e-02	k: 1877	n:40000
LASS6   40000 perm   8 sec   (5030 perm/sec)   p_kst 4.692500e-02   p_cons 1.858750e-01   p_joint 4.557500e-02

Outputting figure to mutsig2_images.part000000000095/LASS6.3_1195_40000_0.046925_0.18588_0.045575.png
                gene_name: LASS6
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.048 

Current progress: 72 percent done.
LAYN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.908765e-02	ci left: 1.549259e-01	ci right 1.694715e-01	k: 1621	n:10000
Cons ci ratio: 8.135889e-02	ci left: 1.806791e-01	ci right 1.961029e-01	k: 1883	n:10000
KS ci ratio: 7.302283e-02	ci left: 2.154651e-01	ci right 2.318962e-01	k: 2236	n:10000
LAYN   10000 perm   2 sec   (5725 perm/sec)   p_kst 2.236000e-01   p_cons 1.883000e-01   p_joint 1.621000e-01

Outputting figure to mutsig2_images.part000000000095/LAYN.3_1153_10000_0.2236_0.1883_0.1621.png
                gene_name: LAYN
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 74 percent done.
LCK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.328380e-01	ci left: 7.475563e-02	ci right 8.549047e-02	k: 800	n:10000
Cons ci ratio: 8.119962e-02	ci left: 1.812696e-01	ci right 1.967120e-01	k: 1889	n:10000
KS ci ratio: 9.635428e-02	ci left: 1.351158e-01	ci right 1.488935e-01	k: 1419	n:10000
LCK   10000 perm   2 sec   (6210 perm/sec)   p_kst 1.419000e-01   p_cons 1.889000e-01   p_joint 8.000000e-02

Joint ci ratio: 7.974153e-02	ci left: 1.034850e-01	ci right 1.121294e-01	k: 2155	n:20000
Cons ci ratio: 5.806241e-02	ci left: 1.801834e-01	ci right 1.910082e-01	k: 3711	n:20000
KS ci ratio: 6.859909e-02	ci left: 1.355143e-01	ci right 1.451905e-01	k: 2806	n:20000
LCK   20000 perm   4 sec   (5396 perm/sec)   p_kst 1.403000e-01   p_cons 1.855500e-01   p_joint 1.077500e-01

Outputting figure to mutsig2_images.part000000000095/LCK.3_1578_20000_0.1403_0.18555_0.10775.png
                gene_name: LCK
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 76 percent done.
LCMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.874877e-02	ci left: 3.830114e-01	ci right 4.022512e-01	k: 3926	n:10000
Cons ci ratio: 1.025412e-01	ci left: 1.209243e-01	ci right 1.340936e-01	k: 1274	n:10000
KS ci ratio: 3.400154e-02	ci left: 5.608290e-01	ci right 5.803299e-01	k: 5706	n:10000
LCMT1   10000 perm   2 sec   (5991 perm/sec)   p_kst 5.706000e-01   p_cons 1.274000e-01   p_joint 3.926000e-01

Joint ci ratio: 3.239040e-02	ci left: 4.158404e-01	ci right 4.295820e-01	k: 8454	n:20000
Cons ci ratio: 7.330167e-02	ci left: 1.204955e-01	ci right 1.297138e-01	k: 2501	n:20000
KS ci ratio: 2.429039e-02	ci left: 5.586963e-01	ci right 5.724847e-01	k: 11312	n:20000
LCMT1   20000 perm   4 sec   (5363 perm/sec)   p_kst 5.656000e-01   p_cons 1.250500e-01   p_joint 4.227000e-01

Outputting figure to mutsig2_images.part000000000095/LCMT1.3_1049_20000_0.5656_0.12505_0.4227.png
                gene_name: LCMT1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 78 percent done.
LAIR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.479635e-02	ci left: 7.052335e-01	ci right 7.230416e-01	k: 7142	n:10000
Cons ci ratio: 2.459001e-02	ci left: 7.086644e-01	ci right 7.264087e-01	k: 7176	n:10000
KS ci ratio: 3.540304e-02	ci left: 5.408871e-01	ci right 5.604833e-01	k: 5507	n:10000
LAIR2   10000 perm   1 sec   (7147 perm/sec)   p_kst 5.507000e-01   p_cons 7.176000e-01   p_joint 7.142000e-01

Outputting figure to mutsig2_images.part000000000095/LAIR2.2_479_10000_0.5507_0.7176_0.7142.png
                gene_name: LAIR2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 80 percent done.
LAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.584626e-02	ci left: 2.027423e-01	ci right 2.188265e-01	k: 2107	n:10000
KS ci ratio: 2.735981e-02	ci left: 6.631019e-01	ci right 6.815976e-01	k: 6724	n:10000
LAP3   10000 perm   2 sec   (6608 perm/sec)   p_kst 6.724000e-01   p_cons 2.107000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LAP3.2_1612_10000_0.6724_0.2107_1.png
                gene_name: LAP3
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
LARP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.532620e-03	ci left: 9.844741e-01	ci right 9.890359e-01	k: 9869	n:10000
Cons ci ratio: 2.046065e-02	ci left: 7.777276e-01	ci right 7.939056e-01	k: 7859	n:10000
KS ci ratio: 4.215870e-02	ci left: 4.537880e-01	ci right 4.734332e-01	k: 4636	n:10000
LARP4   10000 perm   2 sec   (5896 perm/sec)   p_kst 4.636000e-01   p_cons 7.859000e-01   p_joint 9.869000e-01

Outputting figure to mutsig2_images.part000000000095/LARP4.2_2243_10000_0.4636_0.7859_0.9869.png
                gene_name: LARP4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 85 percent done.
LARP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.787402e-02	ci left: 8.203566e-01	ci right 8.352519e-01	k: 8279	n:10000
Cons ci ratio: 2.721712e-02	ci left: 6.654179e-01	ci right 6.838802e-01	k: 6747	n:10000
KS ci ratio: 4.756368e-02	ci left: 3.947600e-01	ci right 4.140957e-01	k: 4044	n:10000
LARP6   10000 perm   2 sec   (6619 perm/sec)   p_kst 4.044000e-01   p_cons 6.747000e-01   p_joint 8.279000e-01

Outputting figure to mutsig2_images.part000000000095/LARP6.2_1574_10000_0.4044_0.6747_0.8279.png
                gene_name: LARP6
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 87 percent done.
LASP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.463632e-03	ci left: 9.403504e-01	ci right 9.493882e-01	k: 9450	n:10000
KS ci ratio: 1.381275e-02	ci left: 8.832939e-01	ci right 8.956782e-01	k: 8896	n:10000
LASP1   10000 perm   1 sec   (7018 perm/sec)   p_kst 8.896000e-01   p_cons 9.450000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000095/LASP1.2_814_10000_0.8896_0.945_1.png
                gene_name: LASP1
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
LBX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
Cons ci ratio: 1.306013e+00	ci left: 3.454445e-04	ci right 1.575707e-03	k: 8	n:10000
KS ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
LBX1   10000 perm   1 sec   (6848 perm/sec)   p_kst 8.800000e-03   p_cons 8.000000e-04   p_joint 1.000000e-04

Joint ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
Cons ci ratio: 1.047271e+00	ci left: 3.461416e-04	ci right 1.111263e-03	k: 13	n:20000
KS ci ratio: 2.807961e-01	ci left: 8.295294e-03	ci right 1.105008e-02	k: 192	n:20000
LBX1   20000 perm   3 sec   (6045 perm/sec)   p_kst 9.600000e-03   p_cons 6.500000e-04   p_joint 1.000000e-04

Joint ci ratio: 8.990099e-01	ci left: 3.556356e-04	ci right 9.480936e-04	k: 18	n:30000
Cons ci ratio: 7.684293e-01	ci left: 5.393597e-04	ci right 1.229920e-03	k: 25	n:30000
KS ci ratio: 2.259452e-01	ci left: 8.810667e-03	ci right 1.108575e-02	k: 297	n:30000
LBX1   30000 perm   5 sec   (5734 perm/sec)   p_kst 9.900000e-03   p_cons 8.333333e-04   p_joint 6.000000e-04

Joint ci ratio: 7.837452e-01	ci left: 3.844680e-04	ci right 8.926218e-04	k: 24	n:40000
Cons ci ratio: 7.037711e-01	ci left: 5.060773e-04	ci right 1.070500e-03	k: 30	n:40000
KS ci ratio: 1.962579e-01	ci left: 8.905409e-03	ci right 1.086673e-02	k: 394	n:40000
LBX1   40000 perm   7 sec   (5508 perm/sec)   p_kst 9.850000e-03   p_cons 7.500000e-04   p_joint 6.000000e-04

Joint ci ratio: 3.559286e-01	ci left: 1.990227e-03	ci right 2.869137e-03	k: 120	n:50000
Cons ci ratio: 5.906963e-01	ci left: 6.224540e-04	ci right 1.158241e-03	k: 43	n:50000
KS ci ratio: 1.760346e-01	ci left: 8.955101e-03	ci right 1.070251e-02	k: 490	n:50000
LBX1   50000 perm   9 sec   (5331 perm/sec)   p_kst 9.800000e-03   p_cons 8.600000e-04   p_joint 2.400000e-03

Joint ci ratio: 3.297327e-01	ci left: 1.963190e-03	ci right 2.752846e-03	k: 140	n:60000
Cons ci ratio: 5.541361e-01	ci left: 6.042337e-04	ci right 1.079535e-03	k: 49	n:60000
KS ci ratio: 1.592299e-01	ci left: 9.203287e-03	ci right 1.081131e-02	k: 599	n:60000
LBX1   60000 perm   12 sec   (5185 perm/sec)   p_kst 9.983333e-03   p_cons 8.166667e-04   p_joint 2.333333e-03

Joint ci ratio: 3.105207e-01	ci left: 1.919226e-03	ci right 2.637316e-03	k: 158	n:70000
Cons ci ratio: 5.332348e-01	ci left: 5.672018e-04	ci right 9.902460e-04	k: 53	n:70000
KS ci ratio: 1.491498e-01	ci left: 9.042210e-03	ci right 1.051314e-02	k: 683	n:70000
LBX1   70000 perm   14 sec   (5047 perm/sec)   p_kst 9.757143e-03   p_cons 7.571429e-04   p_joint 2.257143e-03

Joint ci ratio: 2.902372e-01	ci left: 1.945183e-03	ci right 2.616728e-03	k: 181	n:80000
Cons ci ratio: 5.058769e-01	ci left: 5.614651e-04	ci right 9.512195e-04	k: 59	n:80000
KS ci ratio: 1.402174e-01	ci left: 8.996219e-03	ci right 1.036469e-02	k: 773	n:80000
LBX1   80000 perm   16 sec   (4926 perm/sec)   p_kst 9.662500e-03   p_cons 7.375000e-04   p_joint 2.262500e-03

Joint ci ratio: 2.657845e-01	ci left: 2.090902e-03	ci right 2.741833e-03	k: 216	n:90000
Cons ci ratio: 4.524515e-01	ci left: 6.456747e-04	ci right 1.032116e-03	k: 74	n:90000
KS ci ratio: 1.321026e-01	ci left: 9.048472e-03	ci right 1.033898e-02	k: 871	n:90000
LBX1   90000 perm   19 sec   (4807 perm/sec)   p_kst 9.677778e-03   p_cons 8.222222e-04   p_joint 2.400000e-03

Joint ci ratio: 2.537920e-01	ci left: 2.078141e-03	ci right 2.691293e-03	k: 237	n:100000
Cons ci ratio: 4.300952e-01	ci left: 6.522218e-04	ci right 1.017736e-03	k: 82	n:100000
KS ci ratio: 1.255127e-01	ci left: 9.053348e-03	ci right 1.027535e-02	k: 965	n:100000
LBX1   100000 perm   21 sec   (4704 perm/sec)   p_kst 9.650000e-03   p_cons 8.200000e-04   p_joint 2.370000e-03

Joint ci ratio: 2.409685e-01	ci left: 2.110943e-03	ci right 2.697603e-03	k: 263	n:110000
Cons ci ratio: 4.107558e-01	ci left: 6.579645e-04	ci right 1.005590e-03	k: 90	n:110000
KS ci ratio: 1.199914e-01	ci left: 9.032187e-03	ci right 1.019389e-02	k: 1056	n:110000
LBX1   110000 perm   24 sec   (4608 perm/sec)   p_kst 9.600000e-03   p_cons 8.181818e-04   p_joint 2.390909e-03

Joint ci ratio: 2.319239e-01	ci left: 2.099665e-03	ci right 2.658151e-03	k: 284	n:120000
Cons ci ratio: 3.879712e-01	ci left: 6.856020e-04	ci right 1.022609e-03	k: 101	n:120000
KS ci ratio: 1.145869e-01	ci left: 9.104593e-03	ci right 1.021930e-02	k: 1158	n:120000
LBX1   120000 perm   27 sec   (4515 perm/sec)   p_kst 9.650000e-03   p_cons 8.416667e-04   p_joint 2.366667e-03

Joint ci ratio: 2.220159e-01	ci left: 2.126789e-03	ci right 2.665022e-03	k: 310	n:130000
Cons ci ratio: 3.719096e-01	ci left: 6.954853e-04	ci right 1.019756e-03	k: 110	n:130000
KS ci ratio: 1.094588e-01	ci left: 9.234201e-03	ci right 1.031091e-02	k: 1269	n:130000
LBX1   130000 perm   30 sec   (4349 perm/sec)   p_kst 9.761538e-03   p_cons 8.461538e-04   p_joint 2.384615e-03

Joint ci ratio: 2.161913e-01	ci left: 2.089637e-03	ci right 2.602751e-03	k: 327	n:140000
Cons ci ratio: 3.622514e-01	ci left: 6.847114e-04	ci right 9.937104e-04	k: 116	n:140000
KS ci ratio: 1.050396e-01	ci left: 9.332330e-03	ci right 1.037384e-02	k: 1378	n:140000
LBX1   140000 perm   33 sec   (4231 perm/sec)   p_kst 9.842857e-03   p_cons 8.285714e-04   p_joint 2.335714e-03

Joint ci ratio: 2.108022e-01	ci left: 2.057598e-03	ci right 2.548624e-03	k: 344	n:150000
Cons ci ratio: 3.490735e-01	ci left: 6.937055e-04	ci right 9.927998e-04	k: 125	n:150000
KS ci ratio: 1.019142e-01	ci left: 9.268655e-03	ci right 1.027043e-02	k: 1464	n:150000
LBX1   150000 perm   36 sec   (4152 perm/sec)   p_kst 9.760000e-03   p_cons 8.333333e-04   p_joint 2.293333e-03

Joint ci ratio: 2.032795e-01	ci left: 2.083078e-03	ci right 2.560242e-03	k: 370	n:160000
Cons ci ratio: 3.384935e-01	ci left: 6.960332e-04	ci right 9.850494e-04	k: 133	n:160000
KS ci ratio: 9.901985e-02	ci left: 9.219440e-03	ci right 1.018595e-02	k: 1551	n:160000
LBX1   160000 perm   39 sec   (4082 perm/sec)   p_kst 9.693750e-03   p_cons 8.312500e-04   p_joint 2.312500e-03

Joint ci ratio: 1.967573e-01	ci left: 2.100241e-03	ci right 2.564051e-03	k: 395	n:170000
Cons ci ratio: 3.299857e-01	ci left: 6.928113e-04	ci right 9.717249e-04	k: 140	n:170000
KS ci ratio: 9.603398e-02	ci left: 9.239535e-03	ci right 1.017730e-02	k: 1649	n:170000
LBX1   170000 perm   42 sec   (4008 perm/sec)   p_kst 9.700000e-03   p_cons 8.235294e-04   p_joint 2.323529e-03

Joint ci ratio: 1.919711e-01	ci left: 2.089265e-03	ci right 2.538116e-03	k: 415	n:180000
Cons ci ratio: 3.254062e-01	ci left: 6.747150e-04	ci right 9.417860e-04	k: 144	n:180000
KS ci ratio: 9.362797e-02	ci left: 9.192663e-03	ci right 1.010101e-02	k: 1735	n:180000
LBX1   180000 perm   46 sec   (3944 perm/sec)   p_kst 9.638889e-03   p_cons 8.000000e-04   p_joint 2.305556e-03

Joint ci ratio: 1.873028e-01	ci left: 2.084582e-03	ci right 2.520299e-03	k: 436	n:190000
Cons ci ratio: 3.167848e-01	ci left: 6.779163e-04	ci right 9.377051e-04	k: 152	n:190000
KS ci ratio: 9.131827e-02	ci left: 9.166421e-03	ci right 1.004864e-02	k: 1824	n:190000
LBX1   190000 perm   49 sec   (3879 perm/sec)   p_kst 9.600000e-03   p_cons 8.000000e-04   p_joint 2.294737e-03

Joint ci ratio: 1.835628e-01	ci left: 2.066174e-03	ci right 2.488460e-03	k: 454	n:200000
Cons ci ratio: 3.107518e-01	ci left: 6.716582e-04	ci right 9.231750e-04	k: 158	n:200000
KS ci ratio: 8.903068e-02	ci left: 9.172389e-03	ci right 1.003191e-02	k: 1919	n:200000
LBX1   200000 perm   53 sec   (3766 perm/sec)   p_kst 9.595000e-03   p_cons 7.900000e-04   p_joint 2.270000e-03

Joint ci ratio: 1.772433e-01	ci left: 2.117838e-03	ci right 2.534185e-03	k: 487	n:210000
Cons ci ratio: 3.023128e-01	ci left: 6.792365e-04	ci right 9.253566e-04	k: 167	n:210000
KS ci ratio: 8.692861e-02	ci left: 9.173379e-03	ci right 1.001167e-02	k: 2013	n:210000
LBX1   210000 perm   57 sec   (3688 perm/sec)   p_kst 9.585714e-03   p_cons 7.952381e-04   p_joint 2.319048e-03

Joint ci ratio: 1.723655e-01	ci left: 2.143280e-03	ci right 2.551827e-03	k: 515	n:220000
Cons ci ratio: 2.920593e-01	ci left: 6.988435e-04	ci right 9.418925e-04	k: 179	n:220000
KS ci ratio: 8.498908e-02	ci left: 9.170046e-03	ci right 9.988407e-03	k: 2106	n:220000
LBX1   220000 perm   61 sec   (3625 perm/sec)   p_kst 9.572727e-03   p_cons 8.136364e-04   p_joint 2.340909e-03

Joint ci ratio: 1.666456e-01	ci left: 2.199982e-03	ci right 2.604026e-03	k: 551	n:230000
Cons ci ratio: 2.820487e-01	ci left: 7.209140e-04	ci right 9.615178e-04	k: 192	n:230000
KS ci ratio: 8.326943e-02	ci left: 9.145903e-03	ci right 9.944791e-03	k: 2194	n:230000
LBX1   230000 perm   64 sec   (3573 perm/sec)   p_kst 9.539130e-03   p_cons 8.347826e-04   p_joint 2.395652e-03

Joint ci ratio: 1.631369e-01	ci left: 2.204190e-03	ci right 2.599647e-03	k: 575	n:240000
Cons ci ratio: 2.777656e-01	ci left: 7.141210e-04	ci right 9.482054e-04	k: 198	n:240000
KS ci ratio: 8.130920e-02	ci left: 9.201493e-03	ci right 9.985419e-03	k: 2301	n:240000
LBX1   240000 perm   68 sec   (3520 perm/sec)   p_kst 9.587500e-03   p_cons 8.250000e-04   p_joint 2.395833e-03

Joint ci ratio: 1.607838e-01	ci left: 2.181264e-03	ci right 2.566418e-03	k: 592	n:250000
Cons ci ratio: 2.743423e-01	ci left: 7.041713e-04	ci right 9.316589e-04	k: 203	n:250000
KS ci ratio: 7.986704e-02	ci left: 9.162654e-03	ci right 9.928781e-03	k: 2385	n:250000
LBX1   250000 perm   72 sec   (3468 perm/sec)   p_kst 9.540000e-03   p_cons 8.120000e-04   p_joint 2.368000e-03

Joint ci ratio: 1.576256e-01	ci left: 2.186000e-03	ci right 2.563691e-03	k: 616	n:260000
Cons ci ratio: 2.691164e-01	ci left: 7.057611e-04	ci right 9.286861e-04	k: 211	n:260000
KS ci ratio: 7.824353e-02	ci left: 9.187260e-03	ci right 9.939118e-03	k: 2485	n:260000
LBX1   260000 perm   76 sec   (3419 perm/sec)   p_kst 9.557692e-03   p_cons 8.115385e-04   p_joint 2.369231e-03

Joint ci ratio: 1.546465e-01	ci left: 2.190453e-03	ci right 2.561098e-03	k: 640	n:270000
Cons ci ratio: 2.641782e-01	ci left: 7.072711e-04	ci right 9.258958e-04	k: 219	n:270000
KS ci ratio: 7.688043e-02	ci left: 9.170224e-03	ci right 9.907028e-03	k: 2574	n:270000
LBX1   270000 perm   80 sec   (3372 perm/sec)   p_kst 9.533333e-03   p_cons 8.111111e-04   p_joint 2.370370e-03

Joint ci ratio: 1.517159e-01	ci left: 2.198087e-03	ci right 2.562335e-03	k: 665	n:280000
Cons ci ratio: 2.600736e-01	ci left: 7.053688e-04	ci right 9.194672e-04	k: 226	n:280000
KS ci ratio: 7.562917e-02	ci left: 9.143997e-03	ci right 9.866210e-03	k: 2660	n:280000
LBX1   280000 perm   84 sec   (3321 perm/sec)   p_kst 9.500000e-03   p_cons 8.071429e-04   p_joint 2.375000e-03

Joint ci ratio: 1.493798e-01	ci left: 2.191976e-03	ci right 2.549119e-03	k: 686	n:290000
Cons ci ratio: 2.550660e-01	ci left: 7.100771e-04	ci right 9.207947e-04	k: 235	n:290000
KS ci ratio: 7.432788e-02	ci left: 9.146748e-03	ci right 9.856210e-03	k: 2754	n:290000
LBX1   290000 perm   89 sec   (3265 perm/sec)   p_kst 9.496552e-03   p_cons 8.103448e-04   p_joint 2.365517e-03

Joint ci ratio: 1.470444e-01	ci left: 2.189524e-03	ci right 2.540200e-03	k: 708	n:300000
Cons ci ratio: 2.513658e-01	ci left: 7.082605e-04	ci right 9.149127e-04	k: 242	n:300000
KS ci ratio: 7.288520e-02	ci left: 9.201783e-03	ci right 9.901074e-03	k: 2864	n:300000
LBX1   300000 perm   93 sec   (3214 perm/sec)   p_kst 9.546667e-03   p_cons 8.066667e-04   p_joint 2.360000e-03

Joint ci ratio: 1.450141e-01	ci left: 2.181053e-03	ci right 2.525130e-03	k: 728	n:310000
Cons ci ratio: 2.483197e-01	ci left: 7.035562e-04	ci right 9.059639e-04	k: 248	n:310000
KS ci ratio: 7.173058e-02	ci left: 9.199526e-03	ci right 9.887108e-03	k: 2957	n:310000
LBX1   310000 perm   98 sec   (3166 perm/sec)   p_kst 9.538710e-03   p_cons 8.000000e-04   p_joint 2.348387e-03

Joint ci ratio: 1.424003e-01	ci left: 2.194237e-03	ci right 2.533625e-03	k: 755	n:320000
Cons ci ratio: 2.449016e-01	ci left: 7.020932e-04	ci right 9.008768e-04	k: 255	n:320000
KS ci ratio: 7.066424e-02	ci left: 9.188282e-03	ci right 9.864395e-03	k: 3047	n:320000
LBX1   320000 perm   103 sec   (3121 perm/sec)   p_kst 9.521875e-03   p_cons 7.968750e-04   p_joint 2.359375e-03

Joint ci ratio: 1.399229e-01	ci left: 2.206675e-03	ci right 2.541554e-03	k: 782	n:330000
Cons ci ratio: 2.416208e-01	ci left: 7.007368e-04	ci right 8.960802e-04	k: 262	n:330000
KS ci ratio: 6.957695e-02	ci left: 9.195658e-03	ci right 9.861482e-03	k: 3143	n:330000
LBX1   330000 perm   107 sec   (3079 perm/sec)   p_kst 9.524242e-03   p_cons 7.939394e-04   p_joint 2.369697e-03

Joint ci ratio: 1.381701e-01	ci left: 2.198549e-03	ci right 2.527671e-03	k: 802	n:340000
Cons ci ratio: 2.389117e-01	ci left: 6.967115e-04	ci right 8.884326e-04	k: 268	n:340000
KS ci ratio: 6.857042e-02	ci left: 9.194002e-03	ci right 9.849692e-03	k: 3236	n:340000
LBX1   340000 perm   112 sec   (3038 perm/sec)   p_kst 9.517647e-03   p_cons 7.882353e-04   p_joint 2.358824e-03

Joint ci ratio: 1.359857e-01	ci left: 2.207472e-03	ci right 2.532283e-03	k: 828	n:350000
Cons ci ratio: 2.362917e-01	ci left: 6.929276e-04	ci right 8.812105e-04	k: 274	n:350000
KS ci ratio: 6.763711e-02	ci left: 9.184078e-03	ci right 9.829796e-03	k: 3326	n:350000
LBX1   350000 perm   117 sec   (3000 perm/sec)   p_kst 9.502857e-03   p_cons 7.828571e-04   p_joint 2.365714e-03

Joint ci ratio: 1.341378e-01	ci left: 2.207884e-03	ci right 2.527988e-03	k: 851	n:360000
Cons ci ratio: 2.321085e-01	ci left: 6.998280e-04	ci right 8.861367e-04	k: 284	n:360000
KS ci ratio: 6.687936e-02	ci left: 9.136518e-03	ci right 9.771416e-03	k: 3402	n:360000
LBX1   360000 perm   122 sec   (2962 perm/sec)   p_kst 9.450000e-03   p_cons 7.888889e-04   p_joint 2.363889e-03

Joint ci ratio: 1.319858e-01	ci left: 2.221369e-03	ci right 2.537857e-03	k: 879	n:370000
Cons ci ratio: 2.293098e-01	ci left: 6.987392e-04	ci right 8.821976e-04	k: 291	n:370000
KS ci ratio: 6.595538e-02	ci left: 9.144736e-03	ci right 9.771090e-03	k: 3498	n:370000
LBX1   370000 perm   126 sec   (2926 perm/sec)   p_kst 9.454054e-03   p_cons 7.864865e-04   p_joint 2.375676e-03

Joint ci ratio: 1.301498e-01	ci left: 2.226544e-03	ci right 2.539016e-03	k: 904	n:380000
Cons ci ratio: 2.262317e-01	ci left: 7.002029e-04	ci right 8.812336e-04	k: 299	n:380000
KS ci ratio: 6.502304e-02	ci left: 9.165525e-03	ci right 9.784094e-03	k: 3599	n:380000
LBX1   380000 perm   131 sec   (2891 perm/sec)   p_kst 9.471053e-03   p_cons 7.868421e-04   p_joint 2.378947e-03

Joint ci ratio: 1.279752e-01	ci left: 2.246376e-03	ci right 2.555963e-03	k: 935	n:390000
Cons ci ratio: 2.229124e-01	ci left: 7.040280e-04	ci right 8.830105e-04	k: 308	n:390000
KS ci ratio: 6.412040e-02	ci left: 9.187831e-03	ci right 9.798978e-03	k: 3701	n:390000
LBX1   390000 perm   137 sec   (2857 perm/sec)   p_kst 9.489744e-03   p_cons 7.897436e-04   p_joint 2.397436e-03

Joint ci ratio: 1.263654e-01	ci left: 2.248308e-03	ci right 2.553972e-03	k: 959	n:400000
Cons ci ratio: 2.207797e-01	ci left: 7.005937e-04	ci right 8.767677e-04	k: 314	n:400000
KS ci ratio: 6.340597e-02	ci left: 9.164783e-03	ci right 9.767355e-03	k: 3785	n:400000
LBX1   400000 perm   142 sec   (2816 perm/sec)   p_kst 9.462500e-03   p_cons 7.850000e-04   p_joint 2.397500e-03

Joint ci ratio: 1.246879e-01	ci left: 2.254895e-03	ci right 2.557084e-03	k: 985	n:410000
Cons ci ratio: 2.173560e-01	ci left: 7.065583e-04	ci right 8.811091e-04	k: 324	n:410000
KS ci ratio: 6.261696e-02	ci left: 9.171710e-03	ci right 9.766961e-03	k: 3881	n:410000
LBX1   410000 perm   148 sec   (2779 perm/sec)   p_kst 9.465854e-03   p_cons 7.902439e-04   p_joint 2.402439e-03

Joint ci ratio: 1.237515e-01	ci left: 2.235810e-03	ci right 2.533026e-03	k: 1000	n:420000
Cons ci ratio: 2.160317e-01	ci left: 6.987421e-04	ci right 8.701707e-04	k: 328	n:420000
KS ci ratio: 6.185669e-02	ci left: 9.178351e-03	ci right 9.766541e-03	k: 3977	n:420000
LBX1   420000 perm   153 sec   (2746 perm/sec)   p_kst 9.469048e-03   p_cons 7.809524e-04   p_joint 2.380952e-03

Joint ci ratio: 1.219368e-01	ci left: 2.251439e-03	ci right 2.546028e-03	k: 1030	n:430000
Cons ci ratio: 2.144093e-01	ci left: 6.934933e-04	ci right 8.621882e-04	k: 333	n:430000
KS ci ratio: 6.114619e-02	ci left: 9.177854e-03	ci right 9.759018e-03	k: 4070	n:430000
LBX1   430000 perm   158 sec   (2713 perm/sec)   p_kst 9.465116e-03   p_cons 7.744186e-04   p_joint 2.395349e-03

Joint ci ratio: 1.199733e-01	ci left: 2.275206e-03	ci right 2.567771e-03	k: 1064	n:440000
Cons ci ratio: 2.109627e-01	ci left: 7.014008e-04	ci right 8.689222e-04	k: 344	n:440000
KS ci ratio: 6.034998e-02	ci left: 9.210997e-03	ci right 9.786399e-03	k: 4178	n:440000
LBX1   440000 perm   164 sec   (2683 perm/sec)   p_kst 9.495455e-03   p_cons 7.818182e-04   p_joint 2.418182e-03

Joint ci ratio: 1.183718e-01	ci left: 2.287170e-03	ci right 2.577073e-03	k: 1093	n:450000
Cons ci ratio: 2.085585e-01	ci left: 7.026582e-04	ci right 8.683230e-04	k: 352	n:450000
KS ci ratio: 5.976733e-02	ci left: 9.185790e-03	ci right 9.753886e-03	k: 4260	n:450000
LBX1   450000 perm   170 sec   (2652 perm/sec)   p_kst 9.466667e-03   p_cons 7.822222e-04   p_joint 2.428889e-03

Joint ci ratio: 1.168328e-01	ci left: 2.298639e-03	ci right 2.585946e-03	k: 1122	n:460000
Cons ci ratio: 2.048199e-01	ci left: 7.141817e-04	ci right 8.791673e-04	k: 365	n:460000
KS ci ratio: 5.902996e-02	ci left: 9.215257e-03	ci right 9.777904e-03	k: 4367	n:460000
LBX1   460000 perm   176 sec   (2621 perm/sec)   p_kst 9.493478e-03   p_cons 7.934783e-04   p_joint 2.439130e-03

Joint ci ratio: 1.159594e-01	ci left: 2.284848e-03	ci right 2.568150e-03	k: 1139	n:470000
Cons ci ratio: 2.028891e-01	ci left: 7.131197e-04	ci right 8.761145e-04	k: 372	n:470000
KS ci ratio: 5.839171e-02	ci left: 9.220445e-03	ci right 9.777116e-03	k: 4463	n:470000
LBX1   470000 perm   181 sec   (2592 perm/sec)   p_kst 9.495745e-03   p_cons 7.914894e-04   p_joint 2.423404e-03

Joint ci ratio: 1.149062e-01	ci left: 2.279734e-03	ci right 2.559660e-03	k: 1160	n:480000
Cons ci ratio: 2.012772e-01	ci left: 7.101304e-04	ci right 8.709940e-04	k: 378	n:480000
KS ci ratio: 5.776095e-02	ci left: 9.229555e-03	ci right 9.780557e-03	k: 4561	n:480000
LBX1   480000 perm   187 sec   (2563 perm/sec)   p_kst 9.502083e-03   p_cons 7.875000e-04   p_joint 2.416667e-03

Joint ci ratio: 1.132587e-01	ci left: 2.300618e-03	ci right 2.578787e-03	k: 1194	n:490000
Cons ci ratio: 1.976583e-01	ci left: 7.227830e-04	ci right 8.832144e-04	k: 392	n:490000
KS ci ratio: 5.723084e-02	ci left: 9.212170e-03	ci right 9.756919e-03	k: 4646	n:490000
LBX1   490000 perm   193 sec   (2536 perm/sec)   p_kst 9.481633e-03   p_cons 8.000000e-04   p_joint 2.436735e-03

Joint ci ratio: 1.120461e-01	ci left: 2.305140e-03	ci right 2.580676e-03	k: 1220	n:500000
Cons ci ratio: 1.951902e-01	ci left: 7.273440e-04	ci right 8.865322e-04	k: 402	n:500000
KS ci ratio: 5.670297e-02	ci left: 9.199446e-03	ci right 9.738261e-03	k: 4733	n:500000
LBX1   500000 perm   199 sec   (2508 perm/sec)   p_kst 9.466000e-03   p_cons 8.040000e-04   p_joint 2.440000e-03

Joint ci ratio: 1.109610e-01	ci left: 2.305688e-03	ci right 2.578445e-03	k: 1244	n:510000
Cons ci ratio: 1.939911e-01	ci left: 7.224084e-04	ci right 8.794305e-04	k: 407	n:510000
KS ci ratio: 5.604292e-02	ci left: 9.235582e-03	ci right 9.770013e-03	k: 4845	n:510000
LBX1   510000 perm   206 sec   (2481 perm/sec)   p_kst 9.500000e-03   p_cons 7.980392e-04   p_joint 2.439216e-03

Joint ci ratio: 1.098200e-01	ci left: 2.309967e-03	ci right 2.580239e-03	k: 1270	n:520000
Cons ci ratio: 1.918861e-01	ci left: 7.249877e-04	ci right 8.806609e-04	k: 416	n:520000
KS ci ratio: 5.556971e-02	ci left: 9.215360e-03	ci right 9.743973e-03	k: 4928	n:520000
LBX1   520000 perm   212 sec   (2454 perm/sec)   p_kst 9.476923e-03   p_cons 8.000000e-04   p_joint 2.442308e-03

Joint ci ratio: 1.090512e-01	ci left: 2.299415e-03	ci right 2.566448e-03	k: 1288	n:530000
Cons ci ratio: 1.898481e-01	ci left: 7.274785e-04	ci right 8.818362e-04	k: 425	n:530000
KS ci ratio: 5.497005e-02	ci left: 9.242446e-03	ci right 9.766710e-03	k: 5036	n:530000
LBX1   530000 perm   218 sec   (2430 perm/sec)   p_kst 9.501887e-03   p_cons 8.018868e-04   p_joint 2.430189e-03

Joint ci ratio: 1.080912e-01	ci left: 2.298269e-03	ci right 2.562670e-03	k: 1311	n:540000
Cons ci ratio: 1.878737e-01	ci left: 7.298855e-04	ci right 8.829595e-04	k: 434	n:540000
KS ci ratio: 5.442143e-02	ci left: 9.257597e-03	ci right 9.777315e-03	k: 5138	n:540000
LBX1   540000 perm   225 sec   (2404 perm/sec)   p_kst 9.514815e-03   p_cons 8.037037e-04   p_joint 2.427778e-03

Joint ci ratio: 1.070357e-01	ci left: 2.302484e-03	ci right 2.564620e-03	k: 1337	n:550000
Cons ci ratio: 1.863803e-01	ci left: 7.287459e-04	ci right 8.802286e-04	k: 441	n:550000
KS ci ratio: 5.391489e-02	ci left: 9.263253e-03	ci right 9.778297e-03	k: 5235	n:550000
LBX1   550000 perm   231 sec   (2379 perm/sec)   p_kst 9.518182e-03   p_cons 8.018182e-04   p_joint 2.430909e-03

Joint ci ratio: 1.060885e-01	ci left: 2.303083e-03	ci right 2.562822e-03	k: 1361	n:560000
Cons ci ratio: 1.857518e-01	ci left: 7.208399e-04	ci right 8.701170e-04	k: 444	n:560000
KS ci ratio: 5.344247e-02	ci left: 9.261680e-03	ci right 9.771985e-03	k: 5328	n:560000
LBX1   560000 perm   238 sec   (2355 perm/sec)   p_kst 9.514286e-03   p_cons 7.928571e-04   p_joint 2.430357e-03

Joint ci ratio: 1.051660e-01	ci left: 2.303671e-03	ci right 2.561077e-03	k: 1385	n:570000
Cons ci ratio: 1.839013e-01	ci left: 7.232526e-04	ci right 8.713709e-04	k: 453	n:570000
KS ci ratio: 5.304650e-02	ci left: 9.237673e-03	ci right 9.742770e-03	k: 5408	n:570000
LBX1   570000 perm   244 sec   (2331 perm/sec)   p_kst 9.487719e-03   p_cons 7.947368e-04   p_joint 2.429825e-03

Joint ci ratio: 1.042672e-01	ci left: 2.304248e-03	ci right 2.559383e-03	k: 1409	n:580000
Cons ci ratio: 1.819085e-01	ci left: 7.272349e-04	ci right 8.743770e-04	k: 463	n:580000
KS ci ratio: 5.260601e-02	ci left: 9.233227e-03	ci right 9.733760e-03	k: 5499	n:580000
LBX1   580000 perm   251 sec   (2308 perm/sec)   p_kst 9.481034e-03   p_cons 7.982759e-04   p_joint 2.429310e-03

Joint ci ratio: 1.034633e-01	ci left: 2.301512e-03	ci right 2.554261e-03	k: 1431	n:590000
Cons ci ratio: 1.799791e-01	ci left: 7.310905e-04	ci right 8.772728e-04	k: 473	n:590000
KS ci ratio: 5.215748e-02	ci left: 9.235639e-03	ci right 9.731907e-03	k: 5594	n:590000
LBX1   590000 perm   258 sec   (2285 perm/sec)   p_kst 9.481356e-03   p_cons 8.016949e-04   p_joint 2.425424e-03

Joint ci ratio: 1.026778e-01	ci left: 2.298875e-03	ci right 2.549301e-03	k: 1453	n:600000
Cons ci ratio: 1.788510e-01	ci left: 7.284565e-04	ci right 8.731004e-04	k: 479	n:600000
KS ci ratio: 5.169272e-02	ci left: 9.247861e-03	ci right 9.740226e-03	k: 5695	n:600000
LBX1   600000 perm   265 sec   (2262 perm/sec)   p_kst 9.491667e-03   p_cons 7.983333e-04   p_joint 2.421667e-03

Joint ci ratio: 1.018408e-01	ci left: 2.299526e-03	ci right 2.547860e-03	k: 1477	n:610000
Cons ci ratio: 1.766558e-01	ci left: 7.353117e-04	ci right 8.793334e-04	k: 491	n:610000
KS ci ratio: 5.125356e-02	ci left: 9.254846e-03	ci right 9.743272e-03	k: 5793	n:610000
LBX1   610000 perm   272 sec   (2241 perm/sec)   p_kst 9.496721e-03   p_cons 8.049180e-04   p_joint 2.421311e-03

Joint ci ratio: 1.012607e-01	ci left: 2.289160e-03	ci right 2.534882e-03	k: 1494	n:620000
Cons ci ratio: 1.759426e-01	ci left: 7.296185e-04	ci right 8.718869e-04	k: 495	n:620000
KS ci ratio: 5.076889e-02	ci left: 9.282326e-03	ci right 9.767435e-03	k: 5904	n:620000
LBX1   620000 perm   279 sec   (2219 perm/sec)   p_kst 9.522581e-03   p_cons 7.983871e-04   p_joint 2.409677e-03

Joint ci ratio: 1.001934e-01	ci left: 2.302339e-03	ci right 2.546717e-03	k: 1526	n:630000
Cons ci ratio: 1.735101e-01	ci left: 7.392880e-04	ci right 8.812401e-04	k: 509	n:630000
KS ci ratio: 5.036538e-02	ci left: 9.283875e-03	ci right 9.765096e-03	k: 5999	n:630000
LBX1   630000 perm   287 sec   (2197 perm/sec)   p_kst 9.522222e-03   p_cons 8.079365e-04   p_joint 2.422222e-03

Joint ci ratio: 9.951176e-02	ci left: 2.298357e-03	ci right 2.540557e-03	k: 1547	n:640000
Cons ci ratio: 1.728342e-01	ci left: 7.337156e-04	ci right 8.739916e-04	k: 513	n:640000
KS ci ratio: 4.998376e-02	ci left: 9.280760e-03	ci right 9.758070e-03	k: 6091	n:640000
LBX1   640000 perm   294 sec   (2177 perm/sec)   p_kst 9.517187e-03   p_cons 8.015625e-04   p_joint 2.417188e-03

Joint ci ratio: 9.868631e-02	ci left: 2.302007e-03	ci right 2.542462e-03	k: 1573	n:650000
Cons ci ratio: 1.715047e-01	ci left: 7.342050e-04	ci right 8.733831e-04	k: 521	n:650000
KS ci ratio: 4.958640e-02	ci left: 9.286873e-03	ci right 9.760591e-03	k: 6189	n:650000
LBX1   650000 perm   301 sec   (2157 perm/sec)   p_kst 9.521538e-03   p_cons 8.015385e-04   p_joint 2.420000e-03

Joint ci ratio: 9.769761e-02	ci left: 2.314423e-03	ci right 2.553614e-03	k: 1605	n:660000
Cons ci ratio: 1.698849e-01	ci left: 7.375850e-04	ci right 8.759481e-04	k: 531	n:660000
KS ci ratio: 4.919442e-02	ci left: 9.294311e-03	ci right 9.764555e-03	k: 6288	n:660000
LBX1   660000 perm   309 sec   (2137 perm/sec)   p_kst 9.527273e-03   p_cons 8.045455e-04   p_joint 2.431818e-03

Joint ci ratio: 9.700555e-02	ci left: 2.313372e-03	ci right 2.550665e-03	k: 1628	n:670000
Cons ci ratio: 1.686218e-01	ci left: 7.380108e-04	ci right 8.753198e-04	k: 539	n:670000
KS ci ratio: 4.876922e-02	ci left: 9.317761e-03	ci right 9.785002e-03	k: 6398	n:670000
LBX1   670000 perm   316 sec   (2118 perm/sec)   p_kst 9.549254e-03   p_cons 8.044776e-04   p_joint 2.429851e-03

Joint ci ratio: 9.647446e-02	ci left: 2.305181e-03	ci right 2.540266e-03	k: 1646	n:680000
Cons ci ratio: 1.675395e-01	ci left: 7.370188e-04	ci right 8.731743e-04	k: 546	n:680000
KS ci ratio: 4.844888e-02	ci left: 9.304214e-03	ci right 9.767626e-03	k: 6483	n:680000
LBX1   680000 perm   324 sec   (2098 perm/sec)   p_kst 9.533824e-03   p_cons 8.029412e-04   p_joint 2.420588e-03

Joint ci ratio: 9.583667e-02	ci left: 2.302890e-03	ci right 2.536101e-03	k: 1668	n:690000
Cons ci ratio: 1.663277e-01	ci left: 7.374472e-04	ci right 8.725977e-04	k: 554	n:690000
KS ci ratio: 4.810890e-02	ci left: 9.301094e-03	ci right 9.761009e-03	k: 6575	n:690000
LBX1   690000 perm   332 sec   (2080 perm/sec)   p_kst 9.528986e-03   p_cons 8.028986e-04   p_joint 2.417391e-03

Joint ci ratio: 9.495838e-02	ci left: 2.313221e-03	ci right 2.545213e-03	k: 1699	n:700000
Cons ci ratio: 1.645577e-01	ci left: 7.433455e-04	ci right 8.779838e-04	k: 566	n:700000
KS ci ratio: 4.780131e-02	ci left: 9.288192e-03	ci right 9.744452e-03	k: 6660	n:700000
LBX1   700000 perm   340 sec   (2062 perm/sec)   p_kst 9.514286e-03   p_cons 8.085714e-04   p_joint 2.427143e-03

Joint ci ratio: 9.424034e-02	ci left: 2.316394e-03	ci right 2.546850e-03	k: 1725	n:710000
Cons ci ratio: 1.639808e-01	ci left: 7.382779e-04	ci right 8.714833e-04	k: 570	n:710000
KS ci ratio: 4.748889e-02	ci left: 9.279839e-03	ci right 9.732628e-03	k: 6748	n:710000
LBX1   710000 perm   347 sec   (2043 perm/sec)   p_kst 9.504225e-03   p_cons 8.028169e-04   p_joint 2.429577e-03

Joint ci ratio: 9.375316e-02	ci left: 2.308634e-03	ci right 2.537065e-03	k: 1743	n:720000
Cons ci ratio: 1.629849e-01	ci left: 7.373484e-04	ci right 8.694990e-04	k: 577	n:720000
KS ci ratio: 4.719995e-02	ci left: 9.264863e-03	ci right 9.714096e-03	k: 6831	n:720000
LBX1   720000 perm   355 sec   (2025 perm/sec)   p_kst 9.487500e-03   p_cons 8.013889e-04   p_joint 2.420833e-03

Joint ci ratio: 9.322043e-02	ci left: 2.303765e-03	ci right 2.530349e-03	k: 1763	n:730000
Cons ci ratio: 1.617305e-01	ci left: 7.390757e-04	ci right 8.704173e-04	k: 586	n:730000
KS ci ratio: 4.684786e-02	ci left: 9.277386e-03	ci right 9.723780e-03	k: 6934	n:730000
LBX1   730000 perm   364 sec   (2008 perm/sec)   p_kst 9.498630e-03   p_cons 8.027397e-04   p_joint 2.415068e-03

Joint ci ratio: 9.267066e-02	ci left: 2.300352e-03	ci right 2.525193e-03	k: 1784	n:740000
Cons ci ratio: 1.609105e-01	ci left: 7.368689e-04	ci right 8.670901e-04	k: 592	n:740000
KS ci ratio: 4.655031e-02	ci left: 9.270881e-03	ci right 9.714053e-03	k: 7023	n:740000
LBX1   740000 perm   372 sec   (1991 perm/sec)   p_kst 9.490541e-03   p_cons 8.000000e-04   p_joint 2.410811e-03

Joint ci ratio: 9.195203e-02	ci left: 2.306152e-03	ci right 2.529719e-03	k: 1812	n:750000
Cons ci ratio: 1.595704e-01	ci left: 7.398427e-04	ci right 8.693963e-04	k: 602	n:750000
KS ci ratio: 4.625507e-02	ci left: 9.265876e-03	ci right 9.705925e-03	k: 7113	n:750000
LBX1   750000 perm   380 sec   (1974 perm/sec)   p_kst 9.484000e-03   p_cons 8.026667e-04   p_joint 2.416000e-03

Joint ci ratio: 9.137433e-02	ci left: 2.305378e-03	ci right 2.527390e-03	k: 1835	n:760000
Cons ci ratio: 1.578772e-01	ci left: 7.465340e-04	ci right 8.757408e-04	k: 615	n:760000
KS ci ratio: 4.595250e-02	ci left: 9.266215e-03	ci right 9.703325e-03	k: 7207	n:760000
LBX1   760000 perm   388 sec   (1958 perm/sec)   p_kst 9.482895e-03   p_cons 8.092105e-04   p_joint 2.414474e-03

Joint ci ratio: 9.075847e-02	ci left: 2.307166e-03	ci right 2.527773e-03	k: 1860	n:770000
Cons ci ratio: 1.568619e-01	ci left: 7.468193e-04	ci right 8.751659e-04	k: 623	n:770000
KS ci ratio: 4.566210e-02	ci left: 9.263987e-03	ci right 9.698157e-03	k: 7299	n:770000
LBX1   770000 perm   397 sec   (1941 perm/sec)   p_kst 9.479221e-03   p_cons 8.090909e-04   p_joint 2.415584e-03

Joint ci ratio: 9.022685e-02	ci left: 2.305153e-03	ci right 2.524209e-03	k: 1882	n:780000
Cons ci ratio: 1.561134e-01	ci left: 7.446357e-04	ci right 8.719392e-04	k: 629	n:780000
KS ci ratio: 4.536785e-02	ci left: 9.265626e-03	ci right 9.697003e-03	k: 7394	n:780000
LBX1   780000 perm   405 sec   (1925 perm/sec)   p_kst 9.479487e-03   p_cons 8.064103e-04   p_joint 2.412821e-03

Joint ci ratio: 8.956319e-02	ci left: 2.310621e-03	ci right 2.528496e-03	k: 1910	n:790000
Cons ci ratio: 1.551315e-01	ci left: 7.449422e-04	ci right 8.714226e-04	k: 637	n:790000
KS ci ratio: 4.509137e-02	ci left: 9.262227e-03	ci right 9.690749e-03	k: 7485	n:790000
LBX1   790000 perm   415 sec   (1906 perm/sec)   p_kst 9.474684e-03   p_cons 8.063291e-04   p_joint 2.417722e-03

Joint ci ratio: 8.893695e-02	ci left: 2.314735e-03	ci right 2.531393e-03	k: 1937	n:800000
Cons ci ratio: 1.545275e-01	ci left: 7.416381e-04	ci right 8.670219e-04	k: 642	n:800000
KS ci ratio: 4.479005e-02	ci left: 9.271281e-03	ci right 9.697282e-03	k: 7586	n:800000
LBX1   800000 perm   423 sec   (1890 perm/sec)   p_kst 9.482500e-03   p_cons 8.025000e-04   p_joint 2.421250e-03

Joint ci ratio: 8.827865e-02	ci left: 2.321167e-03	ci right 2.536737e-03	k: 1966	n:810000
Cons ci ratio: 1.534572e-01	ci left: 7.431651e-04	ci right 8.678568e-04	k: 651	n:810000
KS ci ratio: 4.452101e-02	ci left: 9.269133e-03	ci right 9.692411e-03	k: 7678	n:810000
LBX1   810000 perm   432 sec   (1874 perm/sec)   p_kst 9.479012e-03   p_cons 8.037037e-04   p_joint 2.427160e-03

Joint ci ratio: 8.763474e-02	ci left: 2.327449e-03	ci right 2.541944e-03	k: 1995	n:820000
Cons ci ratio: 1.526401e-01	ci left: 7.423118e-04	ci right 8.661365e-04	k: 658	n:820000
KS ci ratio: 4.421084e-02	ci left: 9.286343e-03	ci right 9.707377e-03	k: 7786	n:820000
LBX1   820000 perm   441 sec   (1859 perm/sec)   p_kst 9.495122e-03   p_cons 8.024390e-04   p_joint 2.432927e-03

Joint ci ratio: 8.713423e-02	ci left: 2.326512e-03	ci right 2.539634e-03	k: 2018	n:830000
Cons ci ratio: 1.516082e-01	ci left: 7.437989e-04	ci right 8.669569e-04	k: 667	n:830000
KS ci ratio: 4.395204e-02	ci left: 9.284080e-03	ci right 9.702486e-03	k: 7878	n:830000
LBX1   830000 perm   450 sec   (1843 perm/sec)   p_kst 9.491566e-03   p_cons 8.036145e-04   p_joint 2.431325e-03

Joint ci ratio: 8.679144e-02	ci left: 2.317449e-03	ci right 2.528863e-03	k: 2034	n:840000
Cons ci ratio: 1.513823e-01	ci left: 7.372347e-04	ci right 8.591074e-04	k: 669	n:840000
KS ci ratio: 4.368668e-02	ci left: 9.286589e-03	ci right 9.702518e-03	k: 7974	n:840000
LBX1   840000 perm   460 sec   (1827 perm/sec)   p_kst 9.492857e-03   p_cons 7.964286e-04   p_joint 2.421429e-03

Joint ci ratio: 8.638935e-02	ci left: 2.312053e-03	ci right 2.521949e-03	k: 2053	n:850000
Cons ci ratio: 1.509328e-01	ci left: 7.330891e-04	ci right 8.538841e-04	k: 673	n:850000
KS ci ratio: 4.344508e-02	ci left: 9.280900e-03	ci right 9.694218e-03	k: 8063	n:850000
LBX1   850000 perm   469 sec   (1812 perm/sec)   p_kst 9.485882e-03   p_cons 7.917647e-04   p_joint 2.415294e-03

Joint ci ratio: 8.593050e-02	ci left: 2.310199e-03	ci right 2.518756e-03	k: 2075	n:860000
Cons ci ratio: 1.498252e-01	ci left: 7.357553e-04	ci right 8.560202e-04	k: 683	n:860000
KS ci ratio: 4.316738e-02	ci left: 9.292605e-03	ci right 9.703732e-03	k: 8167	n:860000
LBX1   860000 perm   478 sec   (1798 perm/sec)   p_kst 9.496512e-03   p_cons 7.941860e-04   p_joint 2.412791e-03

Joint ci ratio: 8.551975e-02	ci left: 2.306141e-03	ci right 2.513287e-03	k: 2095	n:870000
Cons ci ratio: 1.492809e-01	ci left: 7.328303e-04	ci right 8.521431e-04	k: 688	n:870000
KS ci ratio: 4.290541e-02	ci left: 9.299500e-03	ci right 9.708374e-03	k: 8267	n:870000
LBX1   870000 perm   488 sec   (1784 perm/sec)   p_kst 9.502299e-03   p_cons 7.908046e-04   p_joint 2.408046e-03

Joint ci ratio: 8.501420e-02	ci left: 2.307738e-03	ci right 2.513741e-03	k: 2120	n:880000
Cons ci ratio: 1.481030e-01	ci left: 7.365377e-04	ci right 8.554242e-04	k: 699	n:880000
KS ci ratio: 4.265845e-02	ci left: 9.301748e-03	ci right 9.708309e-03	k: 8363	n:880000
LBX1   880000 perm   497 sec   (1771 perm/sec)   p_kst 9.503409e-03   p_cons 7.943182e-04   p_joint 2.409091e-03

Joint ci ratio: 8.451752e-02	ci left: 2.309303e-03	ci right 2.514182e-03	k: 2145	n:890000
Cons ci ratio: 1.473681e-01	ci left: 7.358364e-04	ci right 8.539684e-04	k: 706	n:890000
KS ci ratio: 4.242330e-02	ci left: 9.300616e-03	ci right 9.704833e-03	k: 8456	n:890000
LBX1   890000 perm   506 sec   (1758 perm/sec)   p_kst 9.501124e-03   p_cons 7.932584e-04   p_joint 2.410112e-03

Joint ci ratio: 8.397130e-02	ci left: 2.314100e-03	ci right 2.518013e-03	k: 2173	n:900000
Cons ci ratio: 1.464389e-01	ci left: 7.372930e-04	ci right 8.548472e-04	k: 715	n:900000
KS ci ratio: 4.216710e-02	ci left: 9.310511e-03	ci right 9.712655e-03	k: 8559	n:900000
LBX1   900000 perm   516 sec   (1744 perm/sec)   p_kst 9.510000e-03   p_cons 7.944444e-04   p_joint 2.414444e-03

Joint ci ratio: 8.353066e-02	ci left: 2.313415e-03	ci right 2.516146e-03	k: 2196	n:910000
Cons ci ratio: 1.457284e-01	ci left: 7.366020e-04	ci right 8.534265e-04	k: 722	n:910000
KS ci ratio: 4.192282e-02	ci left: 9.316934e-03	ci right 9.716967e-03	k: 8659	n:910000
LBX1   910000 perm   526 sec   (1731 perm/sec)   p_kst 9.515385e-03   p_cons 7.934066e-04   p_joint 2.413187e-03

Joint ci ratio: 8.315322e-02	ci left: 2.309555e-03	ci right 2.510989e-03	k: 2216	n:920000
Cons ci ratio: 1.450281e-01	ci left: 7.359273e-04	ci right 8.520355e-04	k: 729	n:920000
KS ci ratio: 4.169475e-02	ci left: 9.317844e-03	ci right 9.715688e-03	k: 8754	n:920000
LBX1   920000 perm   536 sec   (1718 perm/sec)   p_kst 9.515217e-03   p_cons 7.923913e-04   p_joint 2.408696e-03

Joint ci ratio: 8.274378e-02	ci left: 2.307887e-03	ci right 2.508136e-03	k: 2238	n:930000
Cons ci ratio: 1.442399e-01	ci left: 7.363050e-04	ci right 8.517870e-04	k: 737	n:930000
KS ci ratio: 4.147274e-02	ci left: 9.317676e-03	ci right 9.713344e-03	k: 8848	n:930000
LBX1   930000 perm   546 sec   (1704 perm/sec)   p_kst 9.513978e-03   p_cons 7.924731e-04   p_joint 2.406452e-03

Joint ci ratio: 8.234033e-02	ci left: 2.306256e-03	ci right 2.505341e-03	k: 2260	n:940000
Cons ci ratio: 1.437539e-01	ci left: 7.335994e-04	ci right 8.482362e-04	k: 742	n:940000
KS ci ratio: 4.122399e-02	ci left: 9.331207e-03	ci right 9.725016e-03	k: 8955	n:940000
LBX1   940000 perm   556 sec   (1692 perm/sec)   p_kst 9.526596e-03   p_cons 7.893617e-04   p_joint 2.404255e-03

Joint ci ratio: 8.188881e-02	ci left: 2.307755e-03	ci right 2.505825e-03	k: 2285	n:950000
Cons ci ratio: 1.430816e-01	ci left: 7.329813e-04	ci right 8.469401e-04	k: 749	n:950000
KS ci ratio: 4.099564e-02	ci left: 9.337165e-03	ci right 9.728992e-03	k: 9055	n:950000
LBX1   950000 perm   566 sec   (1679 perm/sec)   p_kst 9.531579e-03   p_cons 7.884211e-04   p_joint 2.405263e-03

Joint ci ratio: 8.149768e-02	ci left: 2.306164e-03	ci right 2.503107e-03	k: 2307	n:960000
Cons ci ratio: 1.420435e-01	ci left: 7.363958e-04	ci right 8.499844e-04	k: 760	n:960000
KS ci ratio: 4.073738e-02	ci left: 9.358473e-03	ci right 9.748662e-03	k: 9170	n:960000
LBX1   960000 perm   576 sec   (1667 perm/sec)   p_kst 9.552083e-03   p_cons 7.916667e-04   p_joint 2.403125e-03

Joint ci ratio: 8.109466e-02	ci left: 2.305619e-03	ci right 2.501495e-03	k: 2330	n:970000
Cons ci ratio: 1.413947e-01	ci left: 7.357647e-04	ci right 8.486939e-04	k: 767	n:970000
KS ci ratio: 4.059221e-02	ci left: 9.329340e-03	ci right 9.716896e-03	k: 9236	n:970000
LBX1   970000 perm   586 sec   (1654 perm/sec)   p_kst 9.521649e-03   p_cons 7.907216e-04   p_joint 2.402062e-03

Joint ci ratio: 8.066322e-02	ci left: 2.307086e-03	ci right 2.501996e-03	k: 2355	n:980000
Cons ci ratio: 1.405734e-01	ci left: 7.371167e-04	ci right 8.495411e-04	k: 776	n:980000
KS ci ratio: 4.037851e-02	ci left: 9.333131e-03	ci right 9.718756e-03	k: 9334	n:980000
LBX1   980000 perm   597 sec   (1643 perm/sec)   p_kst 9.524490e-03   p_cons 7.918367e-04   p_joint 2.403061e-03

Joint ci ratio: 8.025548e-02	ci left: 2.307537e-03	ci right 2.501453e-03	k: 2379	n:990000
Cons ci ratio: 1.398552e-01	ci left: 7.374684e-04	ci right 8.493240e-04	k: 784	n:990000
KS ci ratio: 4.017676e-02	ci left: 9.332850e-03	ci right 9.716492e-03	k: 9428	n:990000
LBX1   990000 perm   607 sec   (1631 perm/sec)   p_kst 9.523232e-03   p_cons 7.919192e-04   p_joint 2.403030e-03

Joint ci ratio: 7.990386e-02	ci left: 2.305041e-03	ci right 2.497859e-03	k: 2400	n:1000000
Cons ci ratio: 1.390603e-01	ci left: 7.387798e-04	ci right 8.501445e-04	k: 793	n:1000000
KS ci ratio: 3.998437e-02	ci left: 9.329609e-03	ci right 9.711240e-03	k: 9519	n:1000000
LBX1   1000000 perm   618 sec   (1619 perm/sec)   p_kst 9.519000e-03   p_cons 7.930000e-04   p_joint 2.400000e-03

Joint ci ratio: 7.962276e-02	ci left: 2.298714e-03	ci right 2.490296e-03	k: 2417	n:1010000
Cons ci ratio: 1.384514e-01	ci left: 7.381552e-04	ci right 8.488984e-04	k: 800	n:1010000
KS ci ratio: 3.978217e-02	ci left: 9.332319e-03	ci right 9.712086e-03	k: 9616	n:1010000
LBX1   1010000 perm   628 sec   (1608 perm/sec)   p_kst 9.520792e-03   p_cons 7.920792e-04   p_joint 2.393069e-03

Joint ci ratio: 7.924679e-02	ci left: 2.298279e-03	ci right 2.488878e-03	k: 2440	n:1020000
Cons ci ratio: 1.381932e-01	ci left: 7.337576e-04	ci right 8.436189e-04	k: 803	n:1020000
KS ci ratio: 3.960978e-02	ci left: 9.322360e-03	ci right 9.700041e-03	k: 9700	n:1020000
LBX1   1020000 perm   639 sec   (1597 perm/sec)   p_kst 9.509804e-03   p_cons 7.872549e-04   p_joint 2.392157e-03

Joint ci ratio: 7.878001e-02	ci left: 2.303565e-03	ci right 2.493425e-03	k: 2469	n:1030000
Cons ci ratio: 1.374261e-01	ci left: 7.350704e-04	ci right 8.444674e-04	k: 812	n:1030000
KS ci ratio: 3.942538e-02	ci left: 9.319328e-03	ci right 9.695088e-03	k: 9791	n:1030000
LBX1   1030000 perm   650 sec   (1586 perm/sec)   p_kst 9.505825e-03   p_cons 7.883495e-04   p_joint 2.397087e-03

Joint ci ratio: 7.832138e-02	ci left: 2.308752e-03	ci right 2.497882e-03	k: 2498	n:1040000
Cons ci ratio: 1.363400e-01	ci left: 7.400745e-04	ci right 8.492751e-04	k: 825	n:1040000
KS ci ratio: 3.924353e-02	ci left: 9.316359e-03	ci right 9.690227e-03	k: 9882	n:1040000
LBX1   1040000 perm   660 sec   (1575 perm/sec)   p_kst 9.501923e-03   p_cons 7.932692e-04   p_joint 2.401923e-03

Joint ci ratio: 7.796346e-02	ci left: 2.308241e-03	ci right 2.496426e-03	k: 2521	n:1050000
Cons ci ratio: 1.354409e-01	ci left: 7.431463e-04	ci right 8.520188e-04	k: 836	n:1050000
KS ci ratio: 3.905627e-02	ci left: 9.317222e-03	ci right 9.689301e-03	k: 9977	n:1050000
LBX1   1050000 perm   671 sec   (1564 perm/sec)   p_kst 9.501905e-03   p_cons 7.961905e-04   p_joint 2.400952e-03

Joint ci ratio: 7.750364e-02	ci left: 2.314217e-03	ci right 2.501726e-03	k: 2551	n:1060000
Cons ci ratio: 1.347983e-01	ci left: 7.434275e-04	ci right 8.517830e-04	k: 844	n:1060000
KS ci ratio: 3.886387e-02	ci left: 9.321811e-03	ci right 9.692198e-03	k: 10076	n:1060000
LBX1   1060000 perm   682 sec   (1553 perm/sec)   p_kst 9.505660e-03   p_cons 7.962264e-04   p_joint 2.406604e-03

Joint ci ratio: 7.709677e-02	ci left: 2.317335e-03	ci right 2.504066e-03	k: 2578	n:1070000
Cons ci ratio: 1.341647e-01	ci left: 7.437047e-04	ci right 8.515505e-04	k: 852	n:1070000
KS ci ratio: 3.868580e-02	ci left: 9.320764e-03	ci right 9.689375e-03	k: 10169	n:1070000
LBX1   1070000 perm   694 sec   (1542 perm/sec)   p_kst 9.503738e-03   p_cons 7.962617e-04   p_joint 2.409346e-03

Joint ci ratio: 7.675531e-02	ci left: 2.316765e-03	ci right 2.502587e-03	k: 2601	n:1080000
Cons ci ratio: 1.334624e-01	ci left: 7.448730e-04	ci right 8.522779e-04	k: 861	n:1080000
KS ci ratio: 3.848745e-02	ci left: 9.330746e-03	ci right 9.697818e-03	k: 10274	n:1080000
LBX1   1080000 perm   705 sec   (1532 perm/sec)   p_kst 9.512963e-03   p_cons 7.972222e-04   p_joint 2.408333e-03

Joint ci ratio: 7.641835e-02	ci left: 2.316207e-03	ci right 2.501132e-03	k: 2624	n:1090000
Cons ci ratio: 1.330004e-01	ci left: 7.433603e-04	ci right 8.501468e-04	k: 867	n:1090000
KS ci ratio: 3.831076e-02	ci left: 9.331462e-03	ci right 9.696840e-03	k: 10369	n:1090000
LBX1   1090000 perm   716 sec   (1521 perm/sec)   p_kst 9.512844e-03   p_cons 7.954128e-04   p_joint 2.407339e-03

Joint ci ratio: 7.597083e-02	ci left: 2.322796e-03	ci right 2.507113e-03	k: 2655	n:1100000
Cons ci ratio: 1.320902e-01	ci left: 7.471500e-04	ci right 8.536887e-04	k: 879	n:1100000
KS ci ratio: 3.813095e-02	ci left: 9.334870e-03	ci right 9.698629e-03	k: 10467	n:1100000
LBX1   1100000 perm   728 sec   (1511 perm/sec)   p_kst 9.515455e-03   p_cons 7.990909e-04   p_joint 2.413636e-03

Joint ci ratio: 7.572911e-02	ci left: 2.316894e-03	ci right 2.500132e-03	k: 2672	n:1110000
Cons ci ratio: 1.317913e-01	ci left: 7.439035e-04	ci right 8.497204e-04	k: 883	n:1110000
KS ci ratio: 3.798089e-02	ci left: 9.324835e-03	ci right 9.686741e-03	k: 10550	n:1110000
LBX1   1110000 perm   740 sec   (1500 perm/sec)   p_kst 9.504505e-03   p_cons 7.954955e-04   p_joint 2.407207e-03

Joint ci ratio: 7.534941e-02	ci left: 2.319859e-03	ci right 2.502372e-03	k: 2699	n:1120000
Cons ci ratio: 1.313464e-01	ci left: 7.424423e-04	ci right 8.476670e-04	k: 889	n:1120000
KS ci ratio: 3.782181e-02	ci left: 9.320288e-03	ci right 9.680470e-03	k: 10639	n:1120000
LBX1   1120000 perm   752 sec   (1490 perm/sec)   p_kst 9.499107e-03   p_cons 7.937500e-04   p_joint 2.409821e-03

Joint ci ratio: 7.500295e-02	ci left: 2.321038e-03	ci right 2.502767e-03	k: 2724	n:1130000
Cons ci ratio: 1.306146e-01	ci left: 7.444316e-04	ci right 8.493048e-04	k: 899	n:1130000
KS ci ratio: 3.763816e-02	ci left: 9.328975e-03	ci right 9.687705e-03	k: 10743	n:1130000
LBX1   1130000 perm   763 sec   (1481 perm/sec)   p_kst 9.507080e-03   p_cons 7.955752e-04   p_joint 2.410619e-03

Joint ci ratio: 7.464762e-02	ci left: 2.323058e-03	ci right 2.504046e-03	k: 2750	n:1140000
Cons ci ratio: 1.301096e-01	ci left: 7.438416e-04	ci right 8.481953e-04	k: 906	n:1140000
KS ci ratio: 3.747285e-02	ci left: 9.329693e-03	ci right 9.686841e-03	k: 10838	n:1140000
LBX1   1140000 perm   775 sec   (1471 perm/sec)   p_kst 9.507018e-03   p_cons 7.947368e-04   p_joint 2.412281e-03

Joint ci ratio: 7.441827e-02	ci left: 2.317364e-03	ci right 2.497330e-03	k: 2767	n:1150000
Cons ci ratio: 1.298953e-01	ci left: 7.398972e-04	ci right 8.435133e-04	k: 909	n:1150000
KS ci ratio: 3.728562e-02	ci left: 9.342463e-03	ci right 9.698274e-03	k: 10947	n:1150000
LBX1   1150000 perm   787 sec   (1461 perm/sec)   p_kst 9.519130e-03   p_cons 7.904348e-04   p_joint 2.406087e-03

Joint ci ratio: 7.413767e-02	ci left: 2.315154e-03	ci right 2.494241e-03	k: 2788	n:1160000
Cons ci ratio: 1.293986e-01	ci left: 7.393575e-04	ci right 8.424717e-04	k: 916	n:1160000
KS ci ratio: 3.710455e-02	ci left: 9.353309e-03	ci right 9.707767e-03	k: 11054	n:1160000
LBX1   1160000 perm   799 sec   (1452 perm/sec)   p_kst 9.529310e-03   p_cons 7.896552e-04   p_joint 2.403448e-03

Joint ci ratio: 7.386022e-02	ci left: 2.312983e-03	ci right 2.491204e-03	k: 2809	n:1170000
Cons ci ratio: 1.290474e-01	ci left: 7.371735e-04	ci right 8.396828e-04	k: 921	n:1170000
KS ci ratio: 3.693277e-02	ci left: 9.360587e-03	ci right 9.713643e-03	k: 11157	n:1170000
LBX1   1170000 perm   811 sec   (1442 perm/sec)   p_kst 9.535897e-03   p_cons 7.871795e-04   p_joint 2.400855e-03

Joint ci ratio: 7.350782e-02	ci left: 2.315841e-03	ci right 2.493395e-03	k: 2836	n:1180000
Cons ci ratio: 1.282842e-01	ci left: 7.399483e-04	ci right 8.421887e-04	k: 932	n:1180000
KS ci ratio: 3.676995e-02	ci left: 9.364385e-03	ci right 9.715995e-03	k: 11256	n:1180000
LBX1   1180000 perm   823 sec   (1433 perm/sec)   p_kst 9.538983e-03   p_cons 7.898305e-04   p_joint 2.403390e-03

Joint ci ratio: 7.318603e-02	ci left: 2.317004e-03	ci right 2.493835e-03	k: 2861	n:1190000
Cons ci ratio: 1.278057e-01	ci left: 7.394242e-04	ci right 8.411821e-04	k: 939	n:1190000
KS ci ratio: 3.661415e-02	ci left: 9.365625e-03	ci right 9.715760e-03	k: 11352	n:1190000
LBX1   1190000 perm   835 sec   (1424 perm/sec)   p_kst 9.539496e-03   p_cons 7.890756e-04   p_joint 2.404202e-03

Joint ci ratio: 7.291909e-02	ci left: 2.314876e-03	ci right 2.490873e-03	k: 2882	n:1200000
Cons ci ratio: 1.273999e-01	ci left: 7.381027e-04	ci right 8.393318e-04	k: 945	n:1200000
KS ci ratio: 3.646192e-02	ci left: 9.366022e-03	ci right 9.714685e-03	k: 11447	n:1200000
LBX1   1200000 perm   848 sec   (1416 perm/sec)   p_kst 9.539167e-03   p_cons 7.875000e-04   p_joint 2.401667e-03

Joint ci ratio: 7.271783e-02	ci left: 2.308726e-03	ci right 2.483752e-03	k: 2898	n:1210000
Cons ci ratio: 1.270647e-01	ci left: 7.360033e-04	ci right 8.366590e-04	k: 950	n:1210000
KS ci ratio: 3.629253e-02	ci left: 9.376243e-03	ci right 9.723631e-03	k: 11554	n:1210000
LBX1   1210000 perm   860 sec   (1407 perm/sec)   p_kst 9.548760e-03   p_cons 7.851240e-04   p_joint 2.395041e-03

Joint ci ratio: 7.241868e-02	ci left: 2.309118e-03	ci right 2.483422e-03	k: 2922	n:1220000
Cons ci ratio: 1.264017e-01	ci left: 7.379074e-04	ci right 8.382575e-04	k: 960	n:1220000
KS ci ratio: 3.612079e-02	ci left: 9.388737e-03	ci right 9.734909e-03	k: 11664	n:1220000
LBX1   1220000 perm   873 sec   (1398 perm/sec)   p_kst 9.560656e-03   p_cons 7.868852e-04   p_joint 2.395082e-03

Joint ci ratio: 7.206194e-02	ci left: 2.313496e-03	ci right 2.487234e-03	k: 2951	n:1230000
Cons ci ratio: 1.259439e-01	ci left: 7.374196e-04	ci right 8.373130e-04	k: 967	n:1230000
KS ci ratio: 3.600244e-02	ci left: 9.374442e-03	ci right 9.718930e-03	k: 11741	n:1230000
LBX1   1230000 perm   885 sec   (1389 perm/sec)   p_kst 9.545528e-03   p_cons 7.861789e-04   p_joint 2.399187e-03

Joint ci ratio: 7.171042e-02	ci left: 2.317806e-03	ci right 2.490983e-03	k: 2980	n:1240000
Cons ci ratio: 1.252342e-01	ci left: 7.400650e-04	ci right 8.397099e-04	k: 978	n:1240000
KS ci ratio: 3.585463e-02	ci left: 9.376365e-03	ci right 9.719480e-03	k: 11838	n:1240000
LBX1   1240000 perm   898 sec   (1380 perm/sec)   p_kst 9.546774e-03   p_cons 7.887097e-04   p_joint 2.403226e-03

Joint ci ratio: 7.142348e-02	ci left: 2.318120e-03	ci right 2.490599e-03	k: 3004	n:1250000
Cons ci ratio: 1.245994e-01	ci left: 7.418945e-04	ci right 8.412420e-04	k: 988	n:1250000
KS ci ratio: 3.569805e-02	ci left: 9.383810e-03	ci right 9.725668e-03	k: 11942	n:1250000
LBX1   1250000 perm   911 sec   (1372 perm/sec)   p_kst 9.553600e-03   p_cons 7.904000e-04   p_joint 2.403200e-03

Joint ci ratio: 7.112819e-02	ci left: 2.319209e-03	ci right 2.491027e-03	k: 3029	n:1260000
Cons ci ratio: 1.240985e-01	ci left: 7.421582e-04	ci right 8.411121e-04	k: 996	n:1260000
KS ci ratio: 3.556438e-02	ci left: 9.380128e-03	ci right 9.720545e-03	k: 12032	n:1260000
LBX1   1260000 perm   924 sec   (1364 perm/sec)   p_kst 9.549206e-03   p_cons 7.904762e-04   p_joint 2.403968e-03

Joint ci ratio: 7.084816e-02	ci left: 2.319510e-03	ci right 2.490646e-03	k: 3053	n:1270000
Cons ci ratio: 1.235421e-01	ci left: 7.431816e-04	ci right 8.417951e-04	k: 1005	n:1270000
KS ci ratio: 3.540125e-02	ci left: 9.392896e-03	ci right 9.732181e-03	k: 12143	n:1270000
LBX1   1270000 perm   937 sec   (1356 perm/sec)   p_kst 9.561417e-03   p_cons 7.913386e-04   p_joint 2.403937e-03

Joint ci ratio: 7.058290e-02	ci left: 2.319040e-03	ci right 2.489474e-03	k: 3076	n:1280000
Cons ci ratio: 1.229931e-01	ci left: 7.441899e-04	ci right 8.424665e-04	k: 1014	n:1280000
KS ci ratio: 3.523600e-02	ci left: 9.407791e-03	ci right 9.745996e-03	k: 12257	n:1280000
LBX1   1280000 perm   950 sec   (1348 perm/sec)   p_kst 9.575781e-03   p_cons 7.921875e-04   p_joint 2.403125e-03

Joint ci ratio: 7.037752e-02	ci left: 2.314770e-03	ci right 2.484375e-03	k: 3094	n:1290000
Cons ci ratio: 1.227516e-01	ci left: 7.414264e-04	ci right 8.391319e-04	k: 1018	n:1290000
KS ci ratio: 3.511317e-02	ci left: 9.400942e-03	ci right 9.737699e-03	k: 12343	n:1290000
LBX1   1290000 perm   963 sec   (1340 perm/sec)   p_kst 9.568217e-03   p_cons 7.891473e-04   p_joint 2.398450e-03

Joint ci ratio: 7.007246e-02	ci left: 2.317369e-03	ci right 2.486399e-03	k: 3121	n:1300000
Cons ci ratio: 1.224517e-01	ci left: 7.394513e-04	ci right 8.366412e-04	k: 1023	n:1300000
KS ci ratio: 3.497174e-02	ci left: 9.404877e-03	ci right 9.740391e-03	k: 12443	n:1300000
LBX1   1300000 perm   976 sec   (1332 perm/sec)   p_kst 9.571538e-03   p_cons 7.869231e-04   p_joint 2.400769e-03

Joint ci ratio: 6.978243e-02	ci left: 2.319180e-03	ci right 2.487613e-03	k: 3147	n:1310000
Cons ci ratio: 1.220353e-01	ci left: 7.389868e-04	ci right 8.357614e-04	k: 1030	n:1310000
KS ci ratio: 3.483762e-02	ci left: 9.405727e-03	ci right 9.739958e-03	k: 12539	n:1310000
LBX1   1310000 perm   989 sec   (1325 perm/sec)   p_kst 9.571756e-03   p_cons 7.862595e-04   p_joint 2.402290e-03

Joint ci ratio: 6.951794e-02	ci left: 2.319475e-03	ci right 2.487266e-03	k: 3171	n:1320000
Cons ci ratio: 1.218584e-01	ci left: 7.355917e-04	ci right 8.317720e-04	k: 1033	n:1320000
KS ci ratio: 3.469671e-02	ci left: 9.411073e-03	ci right 9.744115e-03	k: 12641	n:1320000
LBX1   1320000 perm   1002 sec   (1317 perm/sec)   p_kst 9.576515e-03   p_cons 7.825758e-04   p_joint 2.402273e-03

Joint ci ratio: 6.921302e-02	ci left: 2.322723e-03	ci right 2.489982e-03	k: 3199	n:1330000
Cons ci ratio: 1.214480e-01	ci left: 7.351639e-04	ci right 8.309413e-04	k: 1040	n:1330000
KS ci ratio: 3.456846e-02	ci left: 9.410377e-03	ci right 9.742140e-03	k: 12735	n:1330000
LBX1   1330000 perm   1015 sec   (1310 perm/sec)   p_kst 9.575188e-03   p_cons 7.819549e-04   p_joint 2.405263e-03

Joint ci ratio: 6.881599e-02	ci left: 2.332525e-03	ci right 2.499488e-03	k: 3236	n:1340000
Cons ci ratio: 1.206393e-01	ci left: 7.398091e-04	ci right 8.355041e-04	k: 1054	n:1340000
KS ci ratio: 3.443213e-02	ci left: 9.414874e-03	ci right 9.745460e-03	k: 12836	n:1340000
LBX1   1340000 perm   1029 sec   (1302 perm/sec)   p_kst 9.579104e-03   p_cons 7.865672e-04   p_joint 2.414925e-03

Joint ci ratio: 6.858338e-02	ci left: 2.331264e-03	ci right 2.497549e-03	k: 3258	n:1350000
Cons ci ratio: 1.201844e-01	ci left: 7.400765e-04	ci right 8.354195e-04	k: 1062	n:1350000
KS ci ratio: 3.430410e-02	ci left: 9.415634e-03	ci right 9.744993e-03	k: 12932	n:1350000
LBX1   1350000 perm   1042 sec   (1295 perm/sec)   p_kst 9.579259e-03   p_cons 7.866667e-04   p_joint 2.413333e-03

Joint ci ratio: 6.839492e-02	ci left: 2.327130e-03	ci right 2.492647e-03	k: 3276	n:1360000
Cons ci ratio: 1.199029e-01	ci left: 7.382008e-04	ci right 8.330636e-04	k: 1067	n:1360000
KS ci ratio: 3.417748e-02	ci left: 9.416386e-03	ci right 9.744532e-03	k: 13028	n:1360000
LBX1   1360000 perm   1056 sec   (1288 perm/sec)   p_kst 9.579412e-03   p_cons 7.845588e-04   p_joint 2.408824e-03

Joint ci ratio: 6.815618e-02	ci left: 2.326646e-03	ci right 2.491528e-03	k: 3299	n:1370000
Cons ci ratio: 1.194008e-01	ci left: 7.391852e-04	ci right 8.337487e-04	k: 1076	n:1370000
KS ci ratio: 3.407979e-02	ci left: 9.401929e-03	ci right 9.728616e-03	k: 13103	n:1370000
LBX1   1370000 perm   1070 sec   (1281 perm/sec)   p_kst 9.564234e-03   p_cons 7.854015e-04   p_joint 2.408029e-03

Joint ci ratio: 6.794043e-02	ci left: 2.324744e-03	ci right 2.488949e-03	k: 3320	n:1380000
Cons ci ratio: 1.189050e-01	ci left: 7.401562e-04	ci right 8.344230e-04	k: 1085	n:1380000
KS ci ratio: 3.396993e-02	ci left: 9.394869e-03	ci right 9.720238e-03	k: 13188	n:1380000
LBX1   1380000 perm   1084 sec   (1273 perm/sec)   p_kst 9.556522e-03   p_cons 7.862319e-04   p_joint 2.405797e-03

Joint ci ratio: 6.763548e-02	ci left: 2.329237e-03	ci right 2.492992e-03	k: 3350	n:1390000
Cons ci ratio: 1.184153e-01	ci left: 7.411140e-04	ci right 8.350869e-04	k: 1094	n:1390000
KS ci ratio: 3.386756e-02	ci left: 9.384345e-03	ci right 9.708351e-03	k: 13268	n:1390000
LBX1   1390000 perm   1098 sec   (1266 perm/sec)   p_kst 9.545324e-03   p_cons 7.870504e-04   p_joint 2.410072e-03

Joint ci ratio: 6.737456e-02	ci left: 2.330857e-03	ci right 2.494069e-03	k: 3376	n:1400000
Cons ci ratio: 1.179316e-01	ci left: 7.420589e-04	ci right 8.357404e-04	k: 1103	n:1400000
KS ci ratio: 3.376484e-02	ci left: 9.374681e-03	ci right 9.697353e-03	k: 13349	n:1400000
LBX1   1400000 perm   1112 sec   (1259 perm/sec)   p_kst 9.535000e-03   p_cons 7.878571e-04   p_joint 2.411429e-03

Joint ci ratio: 6.712653e-02	ci left: 2.331759e-03	ci right 2.494409e-03	k: 3401	n:1410000
Cons ci ratio: 1.174537e-01	ci left: 7.429912e-04	ci right 8.363840e-04	k: 1112	n:1410000
KS ci ratio: 3.364408e-02	ci left: 9.375705e-03	ci right 9.697236e-03	k: 13445	n:1410000
LBX1   1410000 perm   1126 sec   (1252 perm/sec)   p_kst 9.535461e-03   p_cons 7.886525e-04   p_joint 2.412057e-03

Joint ci ratio: 6.690079e-02	ci left: 2.331264e-03	ci right 2.493312e-03	k: 3424	n:1420000
Cons ci ratio: 1.170862e-01	ci left: 7.425438e-04	ci right 8.355681e-04	k: 1119	n:1420000
KS ci ratio: 3.353711e-02	ci left: 9.369733e-03	ci right 9.690018e-03	k: 13531	n:1420000
LBX1   1420000 perm   1140 sec   (1245 perm/sec)   p_kst 9.528873e-03   p_cons 7.880282e-04   p_joint 2.411268e-03

Joint ci ratio: 6.675498e-02	ci left: 2.325275e-03	ci right 2.486541e-03	k: 3439	n:1430000
Cons ci ratio: 1.170342e-01	ci left: 7.380299e-04	ci right 8.304448e-04	k: 1120	n:1430000
KS ci ratio: 3.340022e-02	ci left: 9.381185e-03	ci right 9.700527e-03	k: 13642	n:1430000
LBX1   1430000 perm   1154 sec   (1239 perm/sec)   p_kst 9.539860e-03   p_cons 7.832168e-04   p_joint 2.404895e-03

Joint ci ratio: 6.654259e-02	ci left: 2.324150e-03	ci right 2.484806e-03	k: 3461	n:1440000
Cons ci ratio: 1.167223e-01	ci left: 7.369495e-04	ci right 8.289663e-04	k: 1126	n:1440000
KS ci ratio: 3.327110e-02	ci left: 9.389036e-03	ci right 9.707386e-03	k: 13748	n:1440000
LBX1   1440000 perm   1169 sec   (1232 perm/sec)   p_kst 9.547222e-03   p_cons 7.819444e-04   p_joint 2.403472e-03

Joint ci ratio: 6.635130e-02	ci left: 2.321686e-03	ci right 2.481692e-03	k: 3481	n:1450000
Cons ci ratio: 1.164129e-01	ci left: 7.358844e-04	ci right 8.275079e-04	k: 1132	n:1450000
KS ci ratio: 3.314466e-02	ci left: 9.396097e-03	ci right 9.713453e-03	k: 13853	n:1450000
LBX1   1450000 perm   1184 sec   (1225 perm/sec)   p_kst 9.553793e-03   p_cons 7.806897e-04   p_joint 2.400690e-03

Joint ci ratio: 6.609547e-02	ci left: 2.323971e-03	ci right 2.483493e-03	k: 3508	n:1460000
Cons ci ratio: 1.157506e-01	ci left: 7.394897e-04	ci right 8.310024e-04	k: 1145	n:1460000
KS ci ratio: 3.304716e-02	ci left: 9.387439e-03	ci right 9.703552e-03	k: 13935	n:1460000
LBX1   1460000 perm   1198 sec   (1219 perm/sec)   p_kst 9.544521e-03   p_cons 7.842466e-04   p_joint 2.402740e-03

Joint ci ratio: 6.587994e-02	ci left: 2.323549e-03	ci right 2.482503e-03	k: 3531	n:1470000
Cons ci ratio: 1.154990e-01	ci left: 7.377621e-04	ci right 8.288491e-04	k: 1150	n:1470000
KS ci ratio: 3.294577e-02	ci left: 9.381599e-03	ci right 9.696528e-03	k: 14021	n:1470000
LBX1   1470000 perm   1213 sec   (1212 perm/sec)   p_kst 9.538095e-03   p_cons 7.823129e-04   p_joint 2.402041e-03

Joint ci ratio: 6.571284e-02	ci left: 2.319812e-03	ci right 2.478091e-03	k: 3549	n:1480000
Cons ci ratio: 1.150997e-01	ci left: 7.380268e-04	ci right 8.288100e-04	k: 1158	n:1480000
KS ci ratio: 3.283708e-02	ci left: 9.380531e-03	ci right 9.694366e-03	k: 14114	n:1480000
LBX1   1480000 perm   1227 sec   (1206 perm/sec)   p_kst 9.536486e-03   p_cons 7.824324e-04   p_joint 2.397973e-03

Joint ci ratio: 6.544596e-02	ci left: 2.323387e-03	ci right 2.481242e-03	k: 3578	n:1490000
Cons ci ratio: 1.144593e-01	ci left: 7.415480e-04	ci right 8.322226e-04	k: 1171	n:1490000
KS ci ratio: 3.273063e-02	ci left: 9.378813e-03	ci right 9.691554e-03	k: 14206	n:1490000
LBX1   1490000 perm   1242 sec   (1200 perm/sec)   p_kst 9.534228e-03   p_cons 7.859060e-04   p_joint 2.401342e-03

Joint ci ratio: 6.526395e-02	ci left: 2.321013e-03	ci right 2.478252e-03	k: 3598	n:1500000
Cons ci ratio: 1.140707e-01	ci left: 7.417853e-04	ci right 8.321602e-04	k: 1179	n:1500000
KS ci ratio: 3.260679e-02	ci left: 9.387700e-03	ci right 9.699531e-03	k: 14314	n:1500000
LBX1   1500000 perm   1256 sec   (1194 perm/sec)   p_kst 9.542667e-03   p_cons 7.860000e-04   p_joint 2.398667e-03

Joint ci ratio: 6.501146e-02	ci left: 2.323883e-03	ci right 2.480684e-03	k: 3626	n:1510000
Cons ci ratio: 1.135903e-01	ci left: 7.433068e-04	ci right 8.334601e-04	k: 1189	n:1510000
KS ci ratio: 3.250482e-02	ci left: 9.384647e-03	ci right 9.695384e-03	k: 14404	n:1510000
LBX1   1510000 perm   1271 sec   (1188 perm/sec)   p_kst 9.539073e-03   p_cons 7.874172e-04   p_joint 2.401325e-03

Joint ci ratio: 6.479743e-02	ci left: 2.324127e-03	ci right 2.480410e-03	k: 3650	n:1520000
Cons ci ratio: 1.132577e-01	ci left: 7.428912e-04	ci right 8.327127e-04	k: 1196	n:1520000
KS ci ratio: 3.239930e-02	ci left: 9.384247e-03	ci right 9.693942e-03	k: 14498	n:1520000
LBX1   1520000 perm   1287 sec   (1181 perm/sec)   p_kst 9.538158e-03   p_cons 7.868421e-04   p_joint 2.401316e-03

Joint ci ratio: 6.464725e-02	ci left: 2.319868e-03	ci right 2.475489e-03	k: 3667	n:1530000
Cons ci ratio: 1.130220e-01	ci left: 7.412112e-04	ci right 8.306306e-04	k: 1201	n:1530000
KS ci ratio: 3.230262e-02	ci left: 9.379314e-03	ci right 9.687906e-03	k: 14585	n:1530000
LBX1   1530000 perm   1302 sec   (1175 perm/sec)   p_kst 9.532680e-03   p_cons 7.849673e-04   p_joint 2.396732e-03

Joint ci ratio: 6.438436e-02	ci left: 2.323971e-03	ci right 2.479209e-03	k: 3697	n:1540000
Cons ci ratio: 1.125083e-01	ci left: 7.433395e-04	ci right 8.325811e-04	k: 1212	n:1540000
KS ci ratio: 3.221456e-02	ci left: 9.369938e-03	ci right 9.677366e-03	k: 14665	n:1540000
LBX1   1540000 perm   1318 sec   (1169 perm/sec)   p_kst 9.522727e-03   p_cons 7.870130e-04   p_joint 2.400649e-03

Joint ci ratio: 6.413328e-02	ci left: 2.327386e-03	ci right 2.482224e-03	k: 3726	n:1550000
Cons ci ratio: 1.120473e-01	ci left: 7.448143e-04	ci right 8.338423e-04	k: 1222	n:1550000
KS ci ratio: 3.211403e-02	ci left: 9.368364e-03	ci right 9.674763e-03	k: 14757	n:1550000
LBX1   1550000 perm   1333 sec   (1163 perm/sec)   p_kst 9.520645e-03   p_cons 7.883871e-04   p_joint 2.403871e-03

Joint ci ratio: 6.384253e-02	ci left: 2.333914e-03	ci right 2.488456e-03	k: 3760	n:1560000
Cons ci ratio: 1.116826e-01	ci left: 7.450245e-04	ci right 8.337687e-04	k: 1230	n:1560000
KS ci ratio: 3.201878e-02	ci left: 9.364268e-03	ci right 9.669608e-03	k: 14845	n:1560000
LBX1   1560000 perm   1349 sec   (1157 perm/sec)   p_kst 9.516026e-03   p_cons 7.884615e-04   p_joint 2.410256e-03

Joint ci ratio: 6.363981e-02	ci left: 2.334091e-03	ci right 2.488136e-03	k: 3784	n:1570000
Cons ci ratio: 1.114115e-01	ci left: 7.439942e-04	ci right 8.323864e-04	k: 1236	n:1570000
KS ci ratio: 3.189636e-02	ci left: 9.376655e-03	ci right 9.681209e-03	k: 14959	n:1570000
LBX1   1570000 perm   1364 sec   (1151 perm/sec)   p_kst 9.528025e-03   p_cons 7.872611e-04   p_joint 2.410191e-03

Joint ci ratio: 6.343900e-02	ci left: 2.334267e-03	ci right 2.487819e-03	k: 3808	n:1580000
Cons ci ratio: 1.110083e-01	ci left: 7.448231e-04	ci right 8.329727e-04	k: 1245	n:1580000
KS ci ratio: 3.182439e-02	ci left: 9.360003e-03	ci right 9.663318e-03	k: 15027	n:1580000
LBX1   1580000 perm   1379 sec   (1146 perm/sec)   p_kst 9.510759e-03   p_cons 7.879747e-04   p_joint 2.410127e-03

Joint ci ratio: 6.329805e-02	ci left: 2.330108e-03	ci right 2.483034e-03	k: 3825	n:1590000
Cons ci ratio: 1.107864e-01	ci left: 7.431961e-04	ci right 8.309657e-04	k: 1250	n:1590000
KS ci ratio: 3.172851e-02	ci left: 9.357913e-03	ci right 9.660230e-03	k: 15118	n:1590000
LBX1   1590000 perm   1395 sec   (1140 perm/sec)   p_kst 9.508176e-03   p_cons 7.861635e-04   p_joint 2.405660e-03

Joint ci ratio: 6.309223e-02	ci left: 2.330923e-03	ci right 2.483387e-03	k: 3850	n:1600000
Cons ci ratio: 1.103900e-01	ci left: 7.440206e-04	ci right 8.315527e-04	k: 1259	n:1600000
KS ci ratio: 3.162825e-02	ci left: 9.358951e-03	ci right 9.660328e-03	k: 15214	n:1600000
LBX1   1600000 perm   1410 sec   (1135 perm/sec)   p_kst 9.508750e-03   p_cons 7.868750e-04   p_joint 2.406250e-03

Joint ci ratio: 6.292911e-02	ci left: 2.328672e-03	ci right 2.480580e-03	k: 3870	n:1610000
Cons ci ratio: 1.099544e-01	ci left: 7.454394e-04	ci right 8.327700e-04	k: 1269	n:1610000
KS ci ratio: 3.154766e-02	ci left: 9.348885e-03	ci right 9.649157e-03	k: 15292	n:1610000
LBX1   1610000 perm   1426 sec   (1129 perm/sec)   p_kst 9.498137e-03   p_cons 7.881988e-04   p_joint 2.403727e-03

Joint ci ratio: 6.274301e-02	ci left: 2.328272e-03	ci right 2.479689e-03	k: 3893	n:1620000
Cons ci ratio: 1.095668e-01	ci left: 7.462409e-04	ci right 8.333375e-04	k: 1278	n:1620000
KS ci ratio: 3.145528e-02	ci left: 9.346293e-03	ci right 9.645588e-03	k: 15382	n:1620000
LBX1   1620000 perm   1441 sec   (1124 perm/sec)   p_kst 9.495062e-03   p_cons 7.888889e-04   p_joint 2.403086e-03

Joint ci ratio: 6.261466e-02	ci left: 2.323650e-03	ci right 2.474446e-03	k: 3909	n:1630000
Cons ci ratio: 1.093108e-01	ci left: 7.452430e-04	ci right 8.320067e-04	k: 1284	n:1630000
KS ci ratio: 3.137395e-02	ci left: 9.337648e-03	ci right 9.635878e-03	k: 15462	n:1630000
LBX1   1630000 perm   1457 sec   (1119 perm/sec)   p_kst 9.485890e-03   p_cons 7.877301e-04   p_joint 2.398160e-03

Joint ci ratio: 6.234400e-02	ci left: 2.329889e-03	ci right 2.480413e-03	k: 3943	n:1640000
Cons ci ratio: 1.089300e-01	ci left: 7.460369e-04	ci right 8.325710e-04	k: 1293	n:1640000
KS ci ratio: 3.126585e-02	ci left: 9.345444e-03	ci right 9.642877e-03	k: 15569	n:1640000
LBX1   1640000 perm   1473 sec   (1113 perm/sec)   p_kst 9.493293e-03   p_cons 7.884146e-04   p_joint 2.404268e-03

Joint ci ratio: 6.215517e-02	ci left: 2.330088e-03	ci right 2.480152e-03	k: 3967	n:1650000
Cons ci ratio: 1.085114e-01	ci left: 7.474113e-04	ci right 8.337504e-04	k: 1303	n:1650000
KS ci ratio: 3.115785e-02	ci left: 9.353750e-03	ci right 9.650400e-03	k: 15677	n:1650000
LBX1   1650000 perm   1489 sec   (1108 perm/sec)   p_kst 9.501212e-03   p_cons 7.896970e-04   p_joint 2.404242e-03

Joint ci ratio: 6.192919e-02	ci left: 2.333250e-03	ci right 2.482952e-03	k: 3996	n:1660000
Cons ci ratio: 1.080565e-01	ci left: 7.493559e-04	ci right 8.355337e-04	k: 1314	n:1660000
KS ci ratio: 3.106288e-02	ci left: 9.354783e-03	ci right 9.650546e-03	k: 15773	n:1660000
LBX1   1660000 perm   1506 sec   (1103 perm/sec)   p_kst 9.501807e-03   p_cons 7.915663e-04   p_joint 2.407229e-03

Joint ci ratio: 6.173640e-02	ci left: 2.334017e-03	ci right 2.483286e-03	k: 4021	n:1670000
Cons ci ratio: 1.078927e-01	ci left: 7.471992e-04	ci right 8.329904e-04	k: 1318	n:1670000
KS ci ratio: 3.097272e-02	ci left: 9.353429e-03	ci right 9.648276e-03	k: 15865	n:1670000
LBX1   1670000 perm   1522 sec   (1098 perm/sec)   p_kst 9.500000e-03   p_cons 7.892216e-04   p_joint 2.407784e-03

Joint ci ratio: 6.158355e-02	ci left: 2.331845e-03	ci right 2.480593e-03	k: 4041	n:1680000
Cons ci ratio: 1.075670e-01	ci left: 7.473852e-04	ci right 8.329223e-04	k: 1326	n:1680000
KS ci ratio: 3.087650e-02	ci left: 9.356227e-03	ci right 9.650229e-03	k: 15964	n:1680000
LBX1   1680000 perm   1538 sec   (1092 perm/sec)   p_kst 9.502381e-03   p_cons 7.892857e-04   p_joint 2.405357e-03

Joint ci ratio: 6.144699e-02	ci left: 2.328534e-03	ci right 2.476729e-03	k: 4059	n:1690000
Cons ci ratio: 1.072040e-01	ci left: 7.481452e-04	ci right 8.334621e-04	k: 1335	n:1690000
KS ci ratio: 3.078408e-02	ci left: 9.357232e-03	ci right 9.650370e-03	k: 16060	n:1690000
LBX1   1690000 perm   1555 sec   (1087 perm/sec)   p_kst 9.502959e-03   p_cons 7.899408e-04   p_joint 2.401775e-03

Joint ci ratio: 6.129627e-02	ci left: 2.326421e-03	ci right 2.474106e-03	k: 4079	n:1700000
Cons ci ratio: 1.069641e-01	ci left: 7.471792e-04	ci right 8.321834e-04	k: 1341	n:1700000
KS ci ratio: 3.070591e-02	ci left: 9.350053e-03	ci right 9.642210e-03	k: 16142	n:1700000
LBX1   1700000 perm   1571 sec   (1082 perm/sec)   p_kst 9.495294e-03   p_cons 7.888235e-04   p_joint 2.399412e-03

Joint ci ratio: 6.111678e-02	ci left: 2.326637e-03	ci right 2.473887e-03	k: 4103	n:1710000
Cons ci ratio: 1.066072e-01	ci left: 7.479323e-04	ci right 8.327204e-04	k: 1350	n:1710000
KS ci ratio: 3.061215e-02	ci left: 9.352826e-03	ci right 9.644161e-03	k: 16241	n:1710000
LBX1   1710000 perm   1588 sec   (1077 perm/sec)   p_kst 9.497661e-03   p_cons 7.894737e-04   p_joint 2.399415e-03

Joint ci ratio: 6.092407e-02	ci left: 2.327995e-03	ci right 2.474851e-03	k: 4129	n:1720000
Cons ci ratio: 1.060978e-01	ci left: 7.509411e-04	ci right 8.356381e-04	k: 1363	n:1720000
KS ci ratio: 3.051453e-02	ci left: 9.358452e-03	ci right 9.649017e-03	k: 16345	n:1720000
LBX1   1720000 perm   1605 sec   (1072 perm/sec)   p_kst 9.502907e-03   p_cons 7.924419e-04   p_joint 2.400581e-03

Joint ci ratio: 6.074782e-02	ci left: 2.328201e-03	ci right 2.474629e-03	k: 4153	n:1730000
Cons ci ratio: 1.057495e-01	ci left: 7.516649e-04	ci right 8.361479e-04	k: 1372	n:1730000
KS ci ratio: 3.041784e-02	ci left: 9.364015e-03	ci right 9.653815e-03	k: 16449	n:1730000
LBX1   1730000 perm   1622 sec   (1067 perm/sec)   p_kst 9.508092e-03   p_cons 7.930636e-04   p_joint 2.400578e-03

Joint ci ratio: 6.057309e-02	ci left: 2.328404e-03	ci right 2.474409e-03	k: 4177	n:1740000
Cons ci ratio: 1.055192e-01	ci left: 7.507021e-04	ci right 8.348818e-04	k: 1378	n:1740000
KS ci ratio: 3.034335e-02	ci left: 9.356397e-03	ci right 9.645239e-03	k: 16530	n:1740000
LBX1   1740000 perm   1639 sec   (1062 perm/sec)   p_kst 9.500000e-03   p_cons 7.919540e-04   p_joint 2.400575e-03

Joint ci ratio: 6.035667e-02	ci left: 2.331983e-03	ci right 2.477672e-03	k: 4207	n:1750000
Cons ci ratio: 1.052145e-01	ci left: 7.508633e-04	ci right 8.348029e-04	k: 1386	n:1750000
KS ci ratio: 3.026113e-02	ci left: 9.353970e-03	ci right 9.641942e-03	k: 16620	n:1750000
LBX1   1750000 perm   1656 sec   (1057 perm/sec)   p_kst 9.497143e-03   p_cons 7.920000e-04   p_joint 2.404000e-03

Joint ci ratio: 6.017816e-02	ci left: 2.332723e-03	ci right 2.478013e-03	k: 4232	n:1760000
Cons ci ratio: 1.049124e-01	ci left: 7.510231e-04	ci right 8.347245e-04	k: 1394	n:1760000
KS ci ratio: 3.017593e-02	ci left: 9.353828e-03	ci right 9.640971e-03	k: 16714	n:1760000
LBX1   1760000 perm   1673 sec   (1052 perm/sec)   p_kst 9.496591e-03   p_cons 7.920455e-04   p_joint 2.404545e-03

Joint ci ratio: 6.000122e-02	ci left: 2.333456e-03	ci right 2.478349e-03	k: 4257	n:1770000
Cons ci ratio: 1.043897e-01	ci left: 7.544827e-04	ci right 8.381251e-04	k: 1408	n:1770000
KS ci ratio: 3.008241e-02	ci left: 9.359297e-03	ci right 9.645701e-03	k: 16818	n:1770000
LBX1   1770000 perm   1690 sec   (1047 perm/sec)   p_kst 9.501695e-03   p_cons 7.954802e-04   p_joint 2.405085e-03

Joint ci ratio: 5.984685e-02	ci left: 2.332521e-03	ci right 2.476970e-03	k: 4279	n:1780000
Cons ci ratio: 1.040578e-01	ci left: 7.551684e-04	ci right 8.386044e-04	k: 1417	n:1780000
KS ci ratio: 2.999512e-02	ci left: 9.361359e-03	ci right 9.646982e-03	k: 16916	n:1780000
LBX1   1780000 perm   1708 sec   (1042 perm/sec)   p_kst 9.503371e-03   p_cons 7.960674e-04   p_joint 2.403933e-03

Joint ci ratio: 5.965892e-02	ci left: 2.334349e-03	ci right 2.478442e-03	k: 4306	n:1790000
Cons ci ratio: 1.037291e-01	ci left: 7.558469e-04	ci right 8.390780e-04	k: 1426	n:1790000
KS ci ratio: 2.991126e-02	ci left: 9.361736e-03	ci right 9.646558e-03	k: 17011	n:1790000
LBX1   1790000 perm   1725 sec   (1037 perm/sec)   p_kst 9.503352e-03   p_cons 7.966480e-04   p_joint 2.405587e-03

Joint ci ratio: 5.947275e-02	ci left: 2.336157e-03	ci right 2.479896e-03	k: 4333	n:1800000
Cons ci ratio: 1.032956e-01	ci left: 7.581419e-04	ci right 8.412556e-04	k: 1438	n:1800000
KS ci ratio: 2.982897e-02	ci left: 9.361559e-03	ci right 9.645578e-03	k: 17105	n:1800000
LBX1   1800000 perm   1743 sec   (1033 perm/sec)   p_kst 9.502778e-03   p_cons 7.988889e-04   p_joint 2.407222e-03

Joint ci ratio: 5.932241e-02	ci left: 2.335224e-03	ci right 2.478530e-03	k: 4355	n:1810000
Cons ci ratio: 1.031167e-01	ci left: 7.566443e-04	ci right 8.394415e-04	k: 1443	n:1810000
KS ci ratio: 2.974299e-02	ci left: 9.364127e-03	ci right 9.647391e-03	k: 17204	n:1810000
LBX1   1810000 perm   1761 sec   (1028 perm/sec)   p_kst 9.504972e-03   p_cons 7.972376e-04   p_joint 2.406077e-03

Joint ci ratio: 5.916643e-02	ci left: 2.334843e-03	ci right 2.477736e-03	k: 4378	n:1820000
Cons ci ratio: 1.027261e-01	ci left: 7.583754e-04	ci right 8.410286e-04	k: 1454	n:1820000
KS ci ratio: 2.967247e-02	ci left: 9.357395e-03	ci right 9.639773e-03	k: 17286	n:1820000
LBX1   1820000 perm   1779 sec   (1023 perm/sec)   p_kst 9.497802e-03   p_cons 7.989011e-04   p_joint 2.405495e-03

Joint ci ratio: 5.903184e-02	ci left: 2.332852e-03	ci right 2.475287e-03	k: 4398	n:1830000
Cons ci ratio: 1.025501e-01	ci left: 7.568933e-04	ci right 8.392352e-04	k: 1459	n:1830000
KS ci ratio: 2.959643e-02	ci left: 9.354535e-03	ci right 9.636091e-03	k: 17375	n:1830000
LBX1   1830000 perm   1797 sec   (1018 perm/sec)   p_kst 9.494536e-03   p_cons 7.972678e-04   p_joint 2.403279e-03

Joint ci ratio: 5.886480e-02	ci left: 2.333560e-03	ci right 2.475622e-03	k: 4423	n:1840000
Cons ci ratio: 1.022007e-01	ci left: 7.580754e-04	ci right 8.402480e-04	k: 1469	n:1840000
KS ci ratio: 2.951671e-02	ci left: 9.354405e-03	ci right 9.635186e-03	k: 17469	n:1840000
LBX1   1840000 perm   1815 sec   (1014 perm/sec)   p_kst 9.494022e-03   p_cons 7.983696e-04   p_joint 2.403804e-03

Joint ci ratio: 5.871901e-02	ci left: 2.332664e-03	ci right 2.474307e-03	k: 4445	n:1850000
Cons ci ratio: 1.019582e-01	ci left: 7.576649e-04	ci right 8.395865e-04	k: 1476	n:1850000
KS ci ratio: 2.942579e-02	ci left: 9.361789e-03	ci right 9.641912e-03	k: 17577	n:1850000
LBX1   1850000 perm   1833 sec   (1009 perm/sec)   p_kst 9.501081e-03   p_cons 7.978378e-04   p_joint 2.402703e-03

Joint ci ratio: 5.850871e-02	ci left: 2.337075e-03	ci right 2.478460e-03	k: 4477	n:1860000
Cons ci ratio: 1.016832e-01	ci left: 7.577830e-04	ci right 8.394832e-04	k: 1484	n:1860000
KS ci ratio: 2.933989e-02	ci left: 9.366427e-03	ci right 9.645856e-03	k: 17680	n:1860000
LBX1   1860000 perm   1851 sec   (1005 perm/sec)   p_kst 9.505376e-03   p_cons 7.978495e-04   p_joint 2.406989e-03

Joint ci ratio: 5.835254e-02	ci left: 2.337224e-03	ci right 2.478228e-03	k: 4501	n:1870000
Cons ci ratio: 1.014785e-01	ci left: 7.568577e-04	ci right 8.382840e-04	k: 1490	n:1870000
KS ci ratio: 2.926887e-02	ci left: 9.361991e-03	ci right 9.640601e-03	k: 17766	n:1870000
LBX1   1870000 perm   1869 sec   (1000 perm/sec)   p_kst 9.500535e-03   p_cons 7.967914e-04   p_joint 2.406952e-03

Joint ci ratio: 5.824279e-02	ci left: 2.333702e-03	ci right 2.474221e-03	k: 4518	n:1880000
Cons ci ratio: 1.011736e-01	ci left: 7.574978e-04	ci right 8.387336e-04	k: 1499	n:1880000
KS ci ratio: 2.919175e-02	ci left: 9.361828e-03	ci right 9.639686e-03	k: 17860	n:1880000
LBX1   1880000 perm   1887 sec   (996 perm/sec)   p_kst 9.500000e-03   p_cons 7.973404e-04   p_joint 2.403191e-03

Joint ci ratio: 5.810157e-02	ci left: 2.332825e-03	ci right 2.472939e-03	k: 4540	n:1890000
Cons ci ratio: 1.010727e-01	ci left: 7.550369e-04	ci right 8.359233e-04	k: 1502	n:1890000
KS ci ratio: 2.912426e-02	ci left: 9.355889e-03	ci right 9.632919e-03	k: 17943	n:1890000
LBX1   1890000 perm   1906 sec   (992 perm/sec)   p_kst 9.493651e-03   p_cons 7.947090e-04   p_joint 2.402116e-03

Joint ci ratio: 5.791050e-02	ci left: 2.336108e-03	ci right 2.475942e-03	k: 4570	n:1900000
Cons ci ratio: 1.007047e-01	ci left: 7.567065e-04	ci right 8.374592e-04	k: 1513	n:1900000
KS ci ratio: 2.905478e-02	ci left: 9.351581e-03	ci right 9.627812e-03	k: 18029	n:1900000
LBX1   1900000 perm   1924 sec   (987 perm/sec)   p_kst 9.488947e-03   p_cons 7.963158e-04   p_joint 2.405263e-03

Joint ci ratio: 5.775907e-02	ci left: 2.336261e-03	ci right 2.475726e-03	k: 4594	n:1910000
Cons ci ratio: 1.002750e-01	ci left: 7.593800e-04	ci right 8.400518e-04	k: 1526	n:1910000
KS ci ratio: 2.898338e-02	ci left: 9.348879e-03	ci right 9.624339e-03	k: 18118	n:1910000
LBX1   1910000 perm   1943 sec   (983 perm/sec)   p_kst 9.485864e-03   p_cons 7.989529e-04   p_joint 2.405236e-03

Joint ci ratio: 5.761507e-02	ci left: 2.335899e-03	ci right 2.474984e-03	k: 4617	n:1920000
Cons ci ratio: 9.994823e-02	ci left: 7.605028e-04	ci right 8.410152e-04	k: 1536	n:1920000
KS ci ratio: 2.890369e-02	ci left: 9.351893e-03	ci right 9.626673e-03	k: 18218	n:1920000
LBX1   1920000 perm   1961 sec   (979 perm/sec)   p_kst 9.488542e-03   p_cons 8.000000e-04   p_joint 2.404688e-03

Outputting figure to mutsig2_images.part000000000095/LBX1.2_854_1920000_0.0094885_0.0008_0.0024047.png
                gene_name: LBX1
               theta_stop: 0.100 
                    nperm: 1920000 
                     p_ks: 0.0095 
        ci_ks_bounds_left: 0.0094 
       ci_ks_bounds_right: 0.0096 
                   p_cons: 0.00080 
      ci_cons_bounds_left: 0.00076 
     ci_cons_bounds_right: 0.00084 
                  p_joint: 0.0024 
     ci_joint_bounds_left: 0.0023 
    ci_joint_bounds_right: 0.0025 

Current progress: 91 percent done.
LCE1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.173503e-01	ci left: 2.806894e-02	ci right 3.500749e-02	k: 314	n:10000
Cons ci ratio: 2.173503e-01	ci left: 2.806894e-02	ci right 3.500749e-02	k: 314	n:10000
KS ci ratio: 9.072868e-02	ci left: 1.501165e-01	ci right 1.644837e-01	k: 1572	n:10000
LCE1A   10000 perm   1 sec   (7556 perm/sec)   p_kst 1.572000e-01   p_cons 3.140000e-02   p_joint 3.140000e-02

Joint ci ratio: 1.500435e-01	ci left: 3.051917e-02	ci right 3.551780e-02	k: 659	n:20000
Cons ci ratio: 1.500435e-01	ci left: 3.051917e-02	ci right 3.551780e-02	k: 659	n:20000
KS ci ratio: 6.466887e-02	ci left: 1.501578e-01	ci right 1.602427e-01	k: 3103	n:20000
LCE1A   20000 perm   3 sec   (6405 perm/sec)   p_kst 1.551500e-01   p_cons 3.295000e-02   p_joint 3.295000e-02

Joint ci ratio: 6.392985e-02	ci left: 1.077951e-01	ci right 1.149470e-01	k: 3340	n:30000
Cons ci ratio: 1.232207e-01	ci left: 3.061915e-02	ci right 3.467202e-02	k: 978	n:30000
KS ci ratio: 5.288962e-02	ci left: 1.506579e-01	ci right 1.588758e-01	k: 4642	n:30000
LCE1A   30000 perm   5 sec   (6074 perm/sec)   p_kst 1.547333e-01   p_cons 3.260000e-02   p_joint 1.113333e-01

Joint ci ratio: 2.715651e-02	ci left: 3.378237e-01	ci right 3.471492e-01	k: 13699	n:40000
Cons ci ratio: 1.051138e-01	ci left: 3.183116e-02	ci right 3.538697e-02	k: 1343	n:40000
KS ci ratio: 4.573252e-02	ci left: 1.516146e-01	ci right 1.587355e-01	k: 6206	n:40000
LCE1A   40000 perm   7 sec   (5835 perm/sec)   p_kst 1.551500e-01   p_cons 3.357500e-02   p_joint 3.424750e-01

Joint ci ratio: 9.355686e-02	ci left: 3.233085e-02	ci right 3.552356e-02	k: 1695	n:50000
Cons ci ratio: 9.355686e-02	ci left: 3.233085e-02	ci right 3.552356e-02	k: 1695	n:50000
KS ci ratio: 4.095995e-02	ci left: 1.516396e-01	ci right 1.580005e-01	k: 7740	n:50000
LCE1A   50000 perm   9 sec   (5638 perm/sec)   p_kst 1.548000e-01   p_cons 3.390000e-02   p_joint 3.390000e-02

Outputting figure to mutsig2_images.part000000000095/LCE1A.2_337_50000_0.1548_0.0339_0.0339.png
                gene_name: LCE1A
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.036 

Current progress: 93 percent done.
LCE3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.282739e-02	ci left: 3.456147e-01	ci right 3.644699e-01	k: 3550	n:10000
Cons ci ratio: 7.899090e-02	ci left: 1.897361e-01	ci right 2.054405e-01	k: 1975	n:10000
KS ci ratio: 3.253245e-02	ci left: 5.823922e-01	ci right 6.017541e-01	k: 5921	n:10000
LCE3D   10000 perm   1 sec   (6905 perm/sec)   p_kst 5.921000e-01   p_cons 1.975000e-01   p_joint 3.550000e-01

Outputting figure to mutsig2_images.part000000000095/LCE3D.2_283_10000_0.5921_0.1975_0.355.png
                gene_name: LCE3D
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 96 percent done.
LCLAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.723172e-01	ci left: 4.494682e-02	ci right 5.351821e-02	k: 491	n:10000
Cons ci ratio: 2.142107e-01	ci left: 2.892165e-02	ci right 3.595419e-02	k: 323	n:10000
KS ci ratio: 5.137174e-02	ci left: 3.584380e-01	ci right 3.774390e-01	k: 3679	n:10000
LCLAT1   10000 perm   2 sec   (6466 perm/sec)   p_kst 3.679000e-01   p_cons 3.230000e-02   p_joint 4.910000e-02

Joint ci ratio: 1.283634e-01	ci left: 4.168362e-02	ci right 4.744973e-02	k: 890	n:20000
Cons ci ratio: 1.531921e-01	ci left: 2.926703e-02	ci right 3.417036e-02	k: 633	n:20000
KS ci ratio: 3.658426e-02	ci left: 3.579743e-01	ci right 3.713651e-01	k: 7293	n:20000
LCLAT1   20000 perm   4 sec   (5672 perm/sec)   p_kst 3.646500e-01   p_cons 3.165000e-02   p_joint 4.450000e-02

Joint ci ratio: 9.494270e-02	ci left: 5.120836e-02	ci right 5.634516e-02	k: 1612	n:30000
Cons ci ratio: 1.252860e-01	ci left: 2.961697e-02	ci right 3.360776e-02	k: 947	n:30000
KS ci ratio: 2.982796e-02	ci left: 3.598811e-01	ci right 3.708117e-01	k: 10960	n:30000
LCLAT1   30000 perm   6 sec   (5373 perm/sec)   p_kst 3.653333e-01   p_cons 3.156667e-02   p_joint 5.373333e-02

Joint ci ratio: 8.404911e-02	ci left: 4.940321e-02	ci right 5.376218e-02	k: 2062	n:40000
Cons ci ratio: 1.096258e-01	ci left: 2.927446e-02	ci right 3.269407e-02	k: 1238	n:40000
KS ci ratio: 2.590106e-02	ci left: 3.593821e-01	ci right 3.688377e-01	k: 14564	n:40000
LCLAT1   40000 perm   8 sec   (5165 perm/sec)   p_kst 3.641000e-01   p_cons 3.095000e-02   p_joint 5.155000e-02

Joint ci ratio: 7.568406e-02	ci left: 4.898958e-02	ci right 5.286277e-02	k: 2545	n:50000
Cons ci ratio: 9.934239e-02	ci left: 2.869775e-02	ci right 3.171712e-02	k: 1509	n:50000
KS ci ratio: 2.314985e-02	ci left: 3.602195e-01	ci right 3.686762e-01	k: 18222	n:50000
LCLAT1   50000 perm   10 sec   (5009 perm/sec)   p_kst 3.644400e-01   p_cons 3.018000e-02   p_joint 5.090000e-02

Outputting figure to mutsig2_images.part000000000095/LCLAT1.2_1269_50000_0.36444_0.03018_0.0509.png
                gene_name: LCLAT1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.053 

Current progress: 98 percent done.
LCMT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.090974e-02	ci left: 7.702306e-01	ci right 7.866069e-01	k: 7785	n:10000
Cons ci ratio: 2.348876e-02	ci left: 7.270405e-01	ci right 7.444219e-01	k: 7358	n:10000
KS ci ratio: 4.108949e-02	ci left: 4.665692e-01	ci right 4.862446e-01	k: 4764	n:10000
LCMT2   10000 perm   2 sec   (6302 perm/sec)   p_kst 4.764000e-01   p_cons 7.358000e-01   p_joint 7.785000e-01

Outputting figure to mutsig2_images.part000000000095/LCMT2.2_2065_10000_0.4764_0.7358_0.7785.png
                gene_name: LCMT2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000095
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 95 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1648>
Subject: Job 9893996: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1648>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000096> was used as the working directory.
Started at Sat Oct  6 00:16:07 2012
Results reported at Sat Oct  6 00:23:38 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000096.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000096.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 96  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000096.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    465.42 sec.
    Max Memory :      3591 MB
    Max Swap   :      6013 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
96
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 96
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 96: processing genes 8565 - 8654
Calculating significance of each gene.
Using projection method.
8565	LCN9	5.724629e-01
8566	LCNL1	1
8567	LCOR	4.187555e-01
8568	LCORL	1
8569	LCP1	1.883024e-01
8570	LCP2	5.265926e-01
8571	LCT	1.585778e-01
8572	LCTL	6.153708e-01
8573	LDB1	1.508891e-01
8574	LDB2	3.973960e-01
8575	LDB3	9.521991e-01
8576	LDHA	3.810924e-01
8577	LDHAL6A	1.044161e-01
8578	LDHAL6B	6.915566e-01
8579	LDHB	5.692667e-01
8580	LDHC	1.067625e-01
8581	LDHD	8.239627e-01
8582	LDLR	8.260045e-01
8583	LDLRAD1	2.578280e-01
8584	LDLRAD2	8.628242e-01
8585	LDLRAD3	3.060705e-01
8586	LDLRAP1	7.857471e-01
8587	LDOC1	3.025425e-01
8588	LDOC1L	8.659174e-01
8589	LEAP2	1
8590	LECT1	4.990743e-01
8591	LECT2	1
8592	LEF1	1.169388e-01
8593	LEFTY1	1
8594	LEFTY2	1
8595	LEKR1	7.604439e-02
8596	LELP1	1.075699e-01
8597	LEMD1	1
8598	LEMD2	1
8599	LEMD3	5.503484e-01
8600	LENEP	1
8601	LENG1	4.562309e-01
8602	LENG8	7.443539e-01
8603	LENG9	9.310825e-01
8604	LEO1	4.441741e-01
8605	LEP	3.557123e-01
8606	LEPR	9.899608e-02
8607	LEPRE1	1
In gene LEPREL1 the following bins exceed PROBCAP:
    READ-AG-3890	categ 6	N = 1793    n = 1	mu =   1.64e-07
8608	LEPREL1	6.469984e-04
8609	LEPREL2	9.091771e-01
8610	LEPROT	1.705238e-01
8611	LEPROTL1	1.113651e-02
8612	LETM1	7.536421e-01
8613	LETM2	8.433110e-01
8614	LETMD1	7.360652e-01
8615	LFNG	1
8616	LGALS1	2.939954e-01
8617	LGALS12	4.244469e-01
8618	LGALS13	1
8619	LGALS14	2.218822e-01
8620	LGALS2	1
8621	LGALS3	1
8622	LGALS3BP	1
8623	LGALS4	7.942842e-01
8624	LGALS7	1
8625	LGALS7B	3.185483e-01
8626	LGALS8	3.931630e-02
In gene LGALS9 the following bins exceed PROBCAP:
    READ-AG-4015	categ 6	N = 1112    n = 1	mu =   3.29e-07
8627	LGALS9	3.771547e-01
8628	LGALS9B	6.258665e-01
8629	LGALS9C	8.761257e-01
8630	LGI1	1.123781e-01
8631	LGI2	2.702523e-01
8632	LGI3	8.465022e-01
8633	LGI4	8.188851e-01
8634	LGMN	2.684840e-01
8635	LGR4	2.712260e-01
8636	LGR5	8.453251e-01
8637	LGR6	1
8638	LGSN	2.400882e-01
8639	LGTN	9.619684e-01
8640	LHB	3.577410e-01
8641	LHCGR	9.430046e-02
8642	LHFP	3.292948e-01
8643	LHFPL1	4.732853e-01
8644	LHFPL2	3.773368e-01
8645	LHFPL3	4.311647e-01
8646	LHFPL4	6.800108e-01
8647	LHFPL5	5.343894e-01
8648	LHPP	3.049651e-01
8649	LHX1	6.572823e-01
8650	LHX2	9.408212e-01
8651	LHX3	3.734849e-01
8652	LHX4	8.767649e-01
8653	LHX5	8.320139e-01
8654	LHX6	4.534832e-01
Done

Running MutSig 2:
Scatter job 96: processing genes 8565 - 8654
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LCT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.321448e-02	ci left: 1.739892e-01	ci right 1.891967e-01	k: 1815	n:10000
Cons ci ratio: 3.566129e-02	ci left: 5.372812e-01	ci right 5.568913e-01	k: 5471	n:10000
KS ci ratio: 9.699204e-02	ci left: 1.335486e-01	ci right 1.472617e-01	k: 1403	n:10000
LCT   10000 perm   3 sec   (3503 perm/sec)   p_kst 1.403000e-01   p_cons 5.471000e-01   p_joint 1.815000e-01

Outputting figure to mutsig2_images.part000000000096/LCT.20_5852_10000_0.1403_0.5471_0.1815.png
                gene_name: LCT
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 2 percent done.
LEPREL1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.060749e-02	ci left: 3.653994e-01	ci right 3.844735e-01	k: 3749	n:10000
Cons ci ratio: 1.058498e-01	ci left: 1.141806e-01	ci right 1.270413e-01	k: 1205	n:10000
KS ci ratio: 2.438390e-02	ci left: 7.120959e-01	ci right 7.297752e-01	k: 7210	n:10000
LEPREL1   10000 perm   2 sec   (4629 perm/sec)   p_kst 7.210000e-01   p_cons 1.205000e-01   p_joint 3.749000e-01

Joint ci ratio: 3.036748e-02	ci left: 4.475313e-01	ci right 4.613819e-01	k: 9089	n:20000
Cons ci ratio: 7.594459e-02	ci left: 1.130680e-01	ci right 1.220435e-01	k: 2350	n:20000
KS ci ratio: 1.760494e-02	ci left: 7.062222e-01	ci right 7.188160e-01	k: 14251	n:20000
LEPREL1   20000 perm   5 sec   (4185 perm/sec)   p_kst 7.125500e-01   p_cons 1.175000e-01   p_joint 4.544500e-01

Outputting figure to mutsig2_images.part000000000096/LEPREL1.10_2187_20000_0.71255_0.1175_0.45445.png
                gene_name: LEPREL1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 4 percent done.
LEPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.056883e-02	ci left: 6.122110e-01	ci right 6.313180e-01	k: 6218	n:10000
Cons ci ratio: 5.347955e-02	ci left: 3.400502e-01	ci right 3.588375e-01	k: 3494	n:10000
KS ci ratio: 1.115922e-02	ci left: 9.197660e-01	ci right 9.301849e-01	k: 9251	n:10000
LEPR   10000 perm   2 sec   (4822 perm/sec)   p_kst 9.251000e-01   p_cons 3.494000e-01   p_joint 6.218000e-01

Outputting figure to mutsig2_images.part000000000096/LEPR.9_3800_10000_0.9251_0.3494_0.6218.png
                gene_name: LEPR
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 7 percent done.
LGR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.272225e-02	ci left: 7.398746e-01	ci right 7.569805e-01	k: 7485	n:10000
KS ci ratio: 1.872082e-02	ci left: 8.065373e-01	ci right 8.218792e-01	k: 8143	n:10000
LGR4   10000 perm   2 sec   (4917 perm/sec)   p_kst 8.143000e-01   p_cons 7.485000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LGR4.9_2928_10000_0.8143_0.7485_1.png
                gene_name: LGR4
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
LEMD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.487530e-02	ci left: 7.039218e-01	ci right 7.217540e-01	k: 7129	n:10000
Cons ci ratio: 4.884086e-02	ci left: 3.821155e-01	ci right 4.013476e-01	k: 3917	n:10000
KS ci ratio: 4.067185e-02	ci left: 4.716635e-01	ci right 4.913473e-01	k: 4815	n:10000
LEMD3   10000 perm   2 sec   (5160 perm/sec)   p_kst 4.815000e-01   p_cons 3.917000e-01   p_joint 7.129000e-01

Outputting figure to mutsig2_images.part000000000096/LEMD3.7_2788_10000_0.4815_0.3917_0.7129.png
                gene_name: LEMD3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 11 percent done.
LCP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.425160e-02	ci left: 8.768454e-01	ci right 8.895304e-01	k: 8833	n:10000
Cons ci ratio: 3.187005e-02	ci left: 5.923277e-01	ci right 6.116129e-01	k: 6020	n:10000
KS ci ratio: 2.677805e-02	ci left: 6.725690e-01	ci right 6.909251e-01	k: 6818	n:10000
LCP1   10000 perm   2 sec   (5242 perm/sec)   p_kst 6.818000e-01   p_cons 6.020000e-01   p_joint 8.833000e-01

Outputting figure to mutsig2_images.part000000000096/LCP1.6_1944_10000_0.6818_0.602_0.8833.png
                gene_name: LCP1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 13 percent done.
LDB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.311543e-01	ci left: 7.659787e-02	ci right 8.744709e-02	k: 819	n:10000
Cons ci ratio: 9.405044e-02	ci left: 1.409954e-01	ci right 1.550103e-01	k: 1479	n:10000
KS ci ratio: 9.768106e-02	ci left: 1.318837e-01	ci right 1.455275e-01	k: 1386	n:10000
LDB1   10000 perm   2 sec   (5817 perm/sec)   p_kst 1.386000e-01   p_cons 1.479000e-01   p_joint 8.190000e-02

Joint ci ratio: 7.128052e-02	ci left: 1.266482e-01	ci right 1.360592e-01	k: 2626	n:20000
Cons ci ratio: 6.632081e-02	ci left: 1.437461e-01	ci right 1.536563e-01	k: 2973	n:20000
KS ci ratio: 6.924610e-02	ci left: 1.332972e-01	ci right 1.429083e-01	k: 2761	n:20000
LDB1   20000 perm   4 sec   (5197 perm/sec)   p_kst 1.380500e-01   p_cons 1.486500e-01   p_joint 1.313000e-01

Outputting figure to mutsig2_images.part000000000096/LDB1.5_1280_20000_0.13805_0.14865_0.1313.png
                gene_name: LDB1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 15 percent done.
LDLR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.057512e-02	ci left: 3.656978e-01	ci right 3.847749e-01	k: 3752	n:10000
Cons ci ratio: 8.143879e-02	ci left: 1.803839e-01	ci right 1.957983e-01	k: 1880	n:10000
KS ci ratio: 1.819289e-02	ci left: 8.151724e-01	ci right 8.302391e-01	k: 8228	n:10000
LDLR   10000 perm   2 sec   (5520 perm/sec)   p_kst 8.228000e-01   p_cons 1.880000e-01   p_joint 3.752000e-01

Outputting figure to mutsig2_images.part000000000096/LDLR.5_2655_10000_0.8228_0.188_0.3752.png
                gene_name: LDLR
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 17 percent done.
LEKR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.091704e-01	ci left: 1.079317e-01	ci right 1.204941e-01	k: 1141	n:10000
Cons ci ratio: 1.227943e-02	ci left: 9.049403e-01	ci right 9.162192e-01	k: 9107	n:10000
KS ci ratio: 1.492827e-01	ci left: 5.966639e-02	ci right 6.938918e-02	k: 644	n:10000
LEKR1   10000 perm   2 sec   (5628 perm/sec)   p_kst 6.440000e-02   p_cons 9.107000e-01   p_joint 1.141000e-01

Joint ci ratio: 7.642427e-02	ci left: 1.117897e-01	ci right 1.207222e-01	k: 2324	n:20000
Cons ci ratio: 8.872043e-03	ci left: 9.029924e-01	ci right 9.110888e-01	k: 18142	n:20000
KS ci ratio: 1.025352e-01	ci left: 6.459783e-02	ci right 7.162836e-02	k: 1361	n:20000
LEKR1   20000 perm   4 sec   (5078 perm/sec)   p_kst 6.805000e-02   p_cons 9.071000e-01   p_joint 1.162000e-01

Joint ci ratio: 5.927464e-02	ci left: 1.234492e-01	ci right 1.310232e-01	k: 3816	n:30000
Cons ci ratio: 7.210604e-03	ci left: 9.045377e-01	ci right 9.111164e-01	k: 27236	n:30000
KS ci ratio: 8.385242e-02	ci left: 6.504582e-02	ci right 7.077154e-02	k: 2036	n:30000
LEKR1   30000 perm   6 sec   (4872 perm/sec)   p_kst 6.786667e-02   p_cons 9.078667e-01   p_joint 1.272000e-01

Outputting figure to mutsig2_images.part000000000096/LEKR1.5_2127_30000_0.067867_0.90787_0.1272.png
                gene_name: LEKR1
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 20 percent done.
LENG8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.775266e-02	ci left: 3.061982e-01	ci right 3.245095e-01	k: 3153	n:10000
Cons ci ratio: 6.136535e-02	ci left: 2.808214e-01	ci right 2.987012e-01	k: 2897	n:10000
KS ci ratio: 5.749955e-02	ci left: 3.080829e-01	ci right 3.264237e-01	k: 3172	n:10000
LENG8   10000 perm   2 sec   (5395 perm/sec)   p_kst 3.172000e-01   p_cons 2.897000e-01   p_joint 3.153000e-01

Outputting figure to mutsig2_images.part000000000096/LENG8.5_2463_10000_0.3172_0.2897_0.3153.png
                gene_name: LENG8
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 22 percent done.
LGALS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.221694e-02	ci left: 5.871085e-01	ci right 6.064351e-01	k: 5968	n:10000
Cons ci ratio: 3.720675e-02	ci left: 5.161571e-01	ci right 5.358278e-01	k: 5260	n:10000
KS ci ratio: 4.092516e-02	ci left: 4.685668e-01	ci right 4.882458e-01	k: 4784	n:10000
LGALS8   10000 perm   2 sec   (5908 perm/sec)   p_kst 4.784000e-01   p_cons 5.260000e-01   p_joint 5.968000e-01

Outputting figure to mutsig2_images.part000000000096/LGALS8.5_1120_10000_0.4784_0.526_0.5968.png
                gene_name: LGALS8
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 24 percent done.
LGI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.711004e-02	ci left: 8.326658e-01	ci right 8.471356e-01	k: 8400	n:10000
KS ci ratio: 1.431370e-02	ci left: 8.759247e-01	ci right 8.886517e-01	k: 8824	n:10000
LGI1   10000 perm   2 sec   (5318 perm/sec)   p_kst 8.824000e-01   p_cons 8.400000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LGI1.5_1706_10000_0.8824_0.84_1.png
                gene_name: LGI1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
LCTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.565400e-02	ci left: 8.555948e-01	ci right 8.691933e-01	k: 8625	n:10000
KS ci ratio: 1.319350e-02	ci left: 8.922095e-01	ci right 9.041574e-01	k: 8983	n:10000
LCTL   10000 perm   2 sec   (5878 perm/sec)   p_kst 8.983000e-01   p_cons 8.625000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LCTL.4_1756_10000_0.8983_0.8625_1.png
                gene_name: LCTL
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
LEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.469819e-01	ci left: 6.150035e-02	ci right 7.135407e-02	k: 663	n:10000
Cons ci ratio: 4.785116e-02	ci left: 3.918721e-01	ci right 4.111853e-01	k: 4015	n:10000
KS ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
LEF1   10000 perm   2 sec   (5900 perm/sec)   p_kst 4.450000e-02   p_cons 4.015000e-01   p_joint 6.630000e-02

Joint ci ratio: 1.079979e-01	ci left: 5.845301e-02	ci right 6.517508e-02	k: 1235	n:20000
Cons ci ratio: 3.354868e-02	ci left: 3.988341e-01	ci right 4.124933e-01	k: 8113	n:20000
KS ci ratio: 1.335450e-01	ci left: 3.853576e-02	ci right 4.409860e-02	k: 825	n:20000
LEF1   20000 perm   4 sec   (5240 perm/sec)   p_kst 4.125000e-02   p_cons 4.056500e-01   p_joint 6.175000e-02

Joint ci ratio: 1.033407e-01	ci left: 4.339680e-02	ci right 4.815833e-02	k: 1372	n:30000
Cons ci ratio: 2.726960e-02	ci left: 4.022648e-01	ci right 4.134197e-01	k: 12235	n:30000
KS ci ratio: 1.085836e-01	ci left: 3.936835e-02	ci right 4.392096e-02	k: 1248	n:30000
LEF1   30000 perm   6 sec   (4983 perm/sec)   p_kst 4.160000e-02   p_cons 4.078333e-01   p_joint 4.573333e-02

Joint ci ratio: 8.629995e-02	ci left: 4.692932e-02	ci right 5.118645e-02	k: 1961	n:40000
Cons ci ratio: 2.351093e-02	ci left: 4.051743e-01	ci right 4.148388e-01	k: 16400	n:40000
KS ci ratio: 9.331766e-02	ci left: 4.027503e-02	ci right 4.424177e-02	k: 1689	n:40000
LEF1   40000 perm   8 sec   (4806 perm/sec)   p_kst 4.222500e-02   p_cons 4.100000e-01   p_joint 4.902500e-02

Outputting figure to mutsig2_images.part000000000096/LEF1.4_1341_40000_0.042225_0.41_0.049025.png
                gene_name: LEF1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.051 

Current progress: 30 percent done.
LEO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.125513e-02	ci left: 6.016648e-01	ci right 6.208704e-01	k: 6113	n:10000
KS ci ratio: 6.403001e-03	ci left: 9.707953e-01	ci right 9.771245e-01	k: 9741	n:10000
LEO1   10000 perm   2 sec   (5482 perm/sec)   p_kst 9.741000e-01   p_cons 6.113000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LEO1.4_2049_10000_0.9741_0.6113_1.png
                gene_name: LEO1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
LGI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.172700e-01	ci left: 9.457666e-02	ci right 1.064572e-01	k: 1004	n:10000
Cons ci ratio: 1.063013e-01	ci left: 1.133015e-01	ci right 1.261210e-01	k: 1196	n:10000
KS ci ratio: 1.227782e-01	ci left: 8.679344e-02	ci right 9.824521e-02	k: 924	n:10000
LGI2   10000 perm   2 sec   (5729 perm/sec)   p_kst 9.240000e-02   p_cons 1.196000e-01   p_joint 1.004000e-01

Joint ci ratio: 6.587906e-02	ci left: 1.454227e-01	ci right 1.553792e-01	k: 3007	n:20000
Cons ci ratio: 7.387652e-02	ci left: 1.188226e-01	ci right 1.279872e-01	k: 2467	n:20000
KS ci ratio: 8.689668e-02	ci left: 8.832299e-02	ci right 9.639598e-02	k: 1846	n:20000
LGI2   20000 perm   4 sec   (5193 perm/sec)   p_kst 9.230000e-02   p_cons 1.233500e-01   p_joint 1.503500e-01

Outputting figure to mutsig2_images.part000000000096/LGI2.4_1670_20000_0.0923_0.12335_0.15035.png
                gene_name: LGI2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 35 percent done.
LGSN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.224134e-02	ci left: 2.750767e-01	ci right 2.928493e-01	k: 2839	n:10000
Cons ci ratio: 4.116368e-02	ci left: 4.656703e-01	ci right 4.853440e-01	k: 4755	n:10000
KS ci ratio: 7.376657e-02	ci left: 2.120120e-01	ci right 2.283513e-01	k: 2201	n:10000
LGSN   10000 perm   2 sec   (5782 perm/sec)   p_kst 2.201000e-01   p_cons 4.755000e-01   p_joint 2.839000e-01

Outputting figure to mutsig2_images.part000000000096/LGSN.4_1546_10000_0.2201_0.4755_0.2839.png
                gene_name: LGSN
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 37 percent done.
LHCGR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.298409e-02	ci left: 2.703238e-01	ci right 2.880050e-01	k: 2791	n:10000
Cons ci ratio: 8.670614e-02	ci left: 1.622916e-01	ci right 1.771013e-01	k: 1696	n:10000
KS ci ratio: 8.315853e-02	ci left: 1.741859e-01	ci right 1.893999e-01	k: 1817	n:10000
LHCGR   10000 perm   2 sec   (4905 perm/sec)   p_kst 1.817000e-01   p_cons 1.696000e-01   p_joint 2.791000e-01

Outputting figure to mutsig2_images.part000000000096/LHCGR.4_2144_10000_0.1817_0.1696_0.2791.png
                gene_name: LHCGR
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 39 percent done.
LCP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.471269e-02	ci left: 4.247549e-01	ci right 4.442833e-01	k: 4345	n:10000
Cons ci ratio: 2.302394e-02	ci left: 7.348207e-01	ci right 7.520373e-01	k: 7435	n:10000
KS ci ratio: 4.876921e-02	ci left: 3.828123e-01	ci right 4.020504e-01	k: 3924	n:10000
LCP2   10000 perm   2 sec   (6177 perm/sec)   p_kst 3.924000e-01   p_cons 7.435000e-01   p_joint 4.345000e-01

Outputting figure to mutsig2_images.part000000000096/LCP2.3_1686_10000_0.3924_0.7435_0.4345.png
                gene_name: LCP2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 41 percent done.
LDHAL6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.419615e-02	ci left: 7.152252e-01	ci right 7.328441e-01	k: 7241	n:10000
KS ci ratio: 1.608017e-02	ci left: 8.489651e-01	ci right 8.628268e-01	k: 8560	n:10000
LDHAL6A   10000 perm   2 sec   (6403 perm/sec)   p_kst 8.560000e-01   p_cons 7.241000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LDHAL6A.3_1027_10000_0.856_0.7241_1.png
                gene_name: LDHAL6A
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
LDHB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.649311e-02	ci left: 3.157228e-01	ci right 3.341792e-01	k: 3249	n:10000
Cons ci ratio: 8.085693e-02	ci left: 1.825490e-01	ci right 1.980318e-01	k: 1902	n:10000
KS ci ratio: 3.296523e-02	ci left: 5.759714e-01	ci right 5.953787e-01	k: 5857	n:10000
LDHB   10000 perm   1 sec   (7035 perm/sec)   p_kst 5.857000e-01   p_cons 1.902000e-01   p_joint 3.249000e-01

Outputting figure to mutsig2_images.part000000000096/LDHB.3_1033_10000_0.5857_0.1902_0.3249.png
                gene_name: LDHB
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 46 percent done.
LDLRAD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.853352e-02	ci left: 4.986503e-01	ci right 5.183447e-01	k: 5085	n:10000
KS ci ratio: 2.832145e-02	ci left: 6.476011e-01	ci right 6.663073e-01	k: 6570	n:10000
LDLRAD3   10000 perm   2 sec   (6625 perm/sec)   p_kst 6.570000e-01   p_cons 5.085000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LDLRAD3.3_1062_10000_0.657_0.5085_1.png
                gene_name: LDLRAD3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
LEPROTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.087408e-01	ci left: 1.087125e-01	ci right 1.213128e-01	k: 1149	n:10000
Cons ci ratio: 1.337476e-01	ci left: 7.378639e-02	ci right 8.446032e-02	k: 790	n:10000
KS ci ratio: 9.280271e-02	ci left: 1.443289e-01	ci right 1.584748e-01	k: 1513	n:10000
LEPROTL1   10000 perm   1 sec   (6867 perm/sec)   p_kst 1.513000e-01   p_cons 7.900000e-02   p_joint 1.149000e-01

Joint ci ratio: 8.274106e-02	ci left: 9.670986e-02	ci right 1.051066e-01	k: 2017	n:20000
Cons ci ratio: 9.593229e-02	ci left: 7.334198e-02	ci right 8.078153e-02	k: 1540	n:20000
KS ci ratio: 6.646526e-02	ci left: 1.432037e-01	ci right 1.530988e-01	k: 2962	n:20000
LEPROTL1   20000 perm   3 sec   (5992 perm/sec)   p_kst 1.481000e-01   p_cons 7.700000e-02   p_joint 1.008500e-01

Outputting figure to mutsig2_images.part000000000096/LEPROTL1.3_647_20000_0.1481_0.077_0.10085.png
                gene_name: LEPROTL1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.11 

Current progress: 50 percent done.
LETM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.424083e-02	ci left: 3.336927e-01	ci right 3.523989e-01	k: 3430	n:10000
Cons ci ratio: 1.964204e-01	ci left: 3.452820e-02	ci right 4.214376e-02	k: 382	n:10000
KS ci ratio: 4.162861e-02	ci left: 4.600779e-01	ci right 4.797396e-01	k: 4699	n:10000
LETM1   10000 perm   2 sec   (6051 perm/sec)   p_kst 4.699000e-01   p_cons 3.820000e-02   p_joint 3.430000e-01

Joint ci ratio: 5.468557e-02	ci left: 1.987800e-01	ci right 2.100061e-01	k: 4087	n:20000
Cons ci ratio: 1.408160e-01	ci left: 3.466792e-02	ci right 3.996769e-02	k: 745	n:20000
KS ci ratio: 2.927921e-02	ci left: 4.656603e-01	ci right 4.795477e-01	k: 9452	n:20000
LETM1   20000 perm   4 sec   (5363 perm/sec)   p_kst 4.726000e-01   p_cons 3.725000e-02   p_joint 2.043500e-01

Joint ci ratio: 5.467026e-02	ci left: 1.422857e-01	ci right 1.503163e-01	k: 4388	n:30000
Cons ci ratio: 1.163885e-01	ci left: 3.430906e-02	ci right 3.858132e-02	k: 1092	n:30000
KS ci ratio: 2.412875e-02	ci left: 4.623403e-01	ci right 4.736659e-01	k: 14040	n:30000
LETM1   30000 perm   6 sec   (5070 perm/sec)   p_kst 4.680000e-01   p_cons 3.640000e-02   p_joint 1.462667e-01

Joint ci ratio: 5.992956e-02	ci left: 9.372187e-02	ci right 9.953684e-02	k: 3864	n:40000
Cons ci ratio: 1.013504e-01	ci left: 3.422003e-02	ci right 3.789772e-02	k: 1441	n:40000
KS ci ratio: 2.082101e-02	ci left: 4.648989e-01	ci right 4.747055e-01	k: 18792	n:40000
LETM1   40000 perm   8 sec   (4900 perm/sec)   p_kst 4.698000e-01   p_cons 3.602500e-02   p_joint 9.660000e-02

Joint ci ratio: 5.060206e-02	ci left: 1.044419e-01	ci right 1.098838e-01	k: 5357	n:50000
Cons ci ratio: 9.079460e-02	ci left: 3.430586e-02	ci right 3.758830e-02	k: 1796	n:50000
KS ci ratio: 1.860734e-02	ci left: 4.658370e-01	ci right 4.746065e-01	k: 23511	n:50000
LETM1   50000 perm   10 sec   (4782 perm/sec)   p_kst 4.702200e-01   p_cons 3.592000e-02   p_joint 1.071400e-01

Outputting figure to mutsig2_images.part000000000096/LETM1.3_2276_50000_0.47022_0.03592_0.10714.png
                gene_name: LETM1
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 52 percent done.
LGMN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.350873e-02	ci left: 8.876989e-01	ci right 8.998707e-01	k: 8939	n:10000
KS ci ratio: 2.400250e-02	ci left: 7.184560e-01	ci right 7.360115e-01	k: 7273	n:10000
LGMN   10000 perm   2 sec   (6159 perm/sec)   p_kst 7.273000e-01   p_cons 8.939000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LGMN.3_1354_10000_0.7273_0.8939_1.png
                gene_name: LGMN
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
LHX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.909067e-02	ci left: 1.893422e-01	ci right 2.050346e-01	k: 1971	n:10000
Cons ci ratio: 2.784546e-02	ci left: 6.552495e-01	ci right 6.738545e-01	k: 6646	n:10000
KS ci ratio: 1.030047e-01	ci left: 1.199465e-01	ci right 1.330719e-01	k: 1264	n:10000
LHX6   10000 perm   2 sec   (6346 perm/sec)   p_kst 1.264000e-01   p_cons 6.646000e-01   p_joint 1.971000e-01

Joint ci ratio: 4.567569e-02	ci left: 2.629625e-01	ci right 2.753046e-01	k: 5382	n:20000
Cons ci ratio: 1.911908e-02	ci left: 6.710719e-01	ci right 6.840765e-01	k: 13552	n:20000
KS ci ratio: 7.212038e-02	ci left: 1.240390e-01	ci right 1.333692e-01	k: 2573	n:20000
LHX6   20000 perm   4 sec   (5550 perm/sec)   p_kst 1.286500e-01   p_cons 6.776000e-01   p_joint 2.691000e-01

Outputting figure to mutsig2_images.part000000000096/LHX6.3_1278_20000_0.12865_0.6776_0.2691.png
                gene_name: LHX6
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 57 percent done.
LCOR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.472179e-02	ci left: 4.246552e-01	ci right 4.441830e-01	k: 4344	n:10000
Cons ci ratio: 1.079305e-02	ci left: 9.244098e-01	ci right 9.345383e-01	k: 9296	n:10000
KS ci ratio: 6.498281e-02	ci left: 2.580513e-01	ci right 2.754848e-01	k: 2667	n:10000
LCOR   10000 perm   2 sec   (6084 perm/sec)   p_kst 2.667000e-01   p_cons 9.296000e-01   p_joint 4.344000e-01

Outputting figure to mutsig2_images.part000000000096/LCOR.2_1325_10000_0.2667_0.9296_0.4344.png
                gene_name: LCOR
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 59 percent done.
LDB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.651309e-02	ci left: 6.769010e-01	ci right 6.951905e-01	k: 6861	n:10000
Cons ci ratio: 6.074508e-02	ci left: 2.849825e-01	ci right 3.029377e-01	k: 2939	n:10000
KS ci ratio: 2.948034e-02	ci left: 6.291955e-01	ci right 6.481237e-01	k: 6387	n:10000
LDB2   10000 perm   2 sec   (6397 perm/sec)   p_kst 6.387000e-01   p_cons 2.939000e-01   p_joint 6.861000e-01

Outputting figure to mutsig2_images.part000000000096/LDB2.2_1263_10000_0.6387_0.2939_0.6861.png
                gene_name: LDB2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 61 percent done.
LDB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.972766e-03	ci left: 9.742942e-01	ci right 9.802233e-01	k: 9774	n:10000
Cons ci ratio: 1.317679e-01	ci left: 7.591905e-02	ci right 8.672633e-02	k: 812	n:10000
KS ci ratio: 9.518041e-03	ci left: 9.397278e-01	ci right 9.488113e-01	k: 9444	n:10000
LDB3   10000 perm   2 sec   (5820 perm/sec)   p_kst 9.444000e-01   p_cons 8.120000e-02   p_joint 9.774000e-01

Joint ci ratio: 4.161619e-03	ci left: 9.758712e-01	ci right 9.799882e-01	k: 19560	n:20000
Cons ci ratio: 9.939914e-02	ci left: 6.855270e-02	ci right 7.577228e-02	k: 1442	n:20000
KS ci ratio: 6.689440e-03	ci left: 9.417502e-01	ci right 9.481197e-01	k: 18900	n:20000
LDB3   20000 perm   4 sec   (5185 perm/sec)   p_kst 9.450000e-01   p_cons 7.210000e-02   p_joint 9.780000e-01

Outputting figure to mutsig2_images.part000000000096/LDB3.2_2572_20000_0.945_0.0721_0.978.png
                gene_name: LDB3
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 63 percent done.
LDHA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.425481e-01	ci left: 6.526833e-02	ci right 7.538371e-02	k: 702	n:10000
KS ci ratio: 1.567378e-02	ci left: 8.552887e-01	ci right 8.688996e-01	k: 8622	n:10000
LDHA   10000 perm   2 sec   (6467 perm/sec)   p_kst 8.622000e-01   p_cons 7.020000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.014994e-01	ci left: 6.586692e-02	ci right 7.295888e-02	k: 1387	n:20000
KS ci ratio: 1.100046e-02	ci left: 8.591206e-01	ci right 8.686733e-01	k: 17279	n:20000
LDHA   20000 perm   3 sec   (5758 perm/sec)   p_kst 8.639500e-01   p_cons 6.935000e-02   p_joint 1

Joint ci ratio: 9.296833e-03	ci left: 8.516052e-01	ci right 8.595925e-01	k: 25669	n:30000
Cons ci ratio: 8.247087e-02	ci left: 6.713787e-02	ci right 7.294573e-02	k: 2100	n:30000
KS ci ratio: 8.960576e-03	ci left: 8.605751e-01	ci right 8.683542e-01	k: 25935	n:30000
LDHA   30000 perm   5 sec   (5503 perm/sec)   p_kst 8.645000e-01   p_cons 7.000000e-02   p_joint 8.556333e-01

Outputting figure to mutsig2_images.part000000000096/LDHA.2_1213_30000_0.8645_0.07_0.85563.png
                gene_name: LDHA
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 65 percent done.
LDHAL6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.108706e-01	ci left: 2.986994e-02	ci right 3.700523e-02	k: 333	n:10000
Cons ci ratio: 5.679055e-02	ci left: 3.134405e-01	ci right 3.318629e-01	k: 3226	n:10000
KS ci ratio: 1.833676e-01	ci left: 3.968114e-02	ci right 4.778736e-02	k: 436	n:10000
LDHAL6B   10000 perm   2 sec   (6597 perm/sec)   p_kst 4.360000e-02   p_cons 3.226000e-01   p_joint 3.330000e-02

Joint ci ratio: 1.447942e-01	ci left: 3.278524e-02	ci right 3.795099e-02	k: 706	n:20000
Cons ci ratio: 4.085156e-02	ci left: 3.087634e-01	ci right 3.216904e-01	k: 6304	n:20000
KS ci ratio: 1.323791e-01	ci left: 3.921338e-02	ci right 4.482076e-02	k: 839	n:20000
LDHAL6B   20000 perm   3 sec   (5870 perm/sec)   p_kst 4.195000e-02   p_cons 3.152000e-01   p_joint 3.530000e-02

Joint ci ratio: 9.068307e-02	ci left: 5.596837e-02	ci right 6.131750e-02	k: 1758	n:30000
Cons ci ratio: 3.329990e-02	ci left: 3.106741e-01	ci right 3.212282e-01	k: 9478	n:30000
KS ci ratio: 1.086744e-01	ci left: 3.930342e-02	ci right 4.385257e-02	k: 1246	n:30000
LDHAL6B   30000 perm   5 sec   (5595 perm/sec)   p_kst 4.153333e-02   p_cons 3.159333e-01   p_joint 5.860000e-02

Joint ci ratio: 8.813400e-02	ci left: 4.504432e-02	ci right 4.922174e-02	k: 1884	n:40000
Cons ci ratio: 2.871836e-02	ci left: 3.131880e-01	ci right 3.223384e-01	k: 12710	n:40000
KS ci ratio: 9.467098e-02	ci left: 3.915097e-02	ci right 4.306601e-02	k: 1643	n:40000
LDHAL6B   40000 perm   7 sec   (5411 perm/sec)   p_kst 4.107500e-02   p_cons 3.177500e-01   p_joint 4.710000e-02

Outputting figure to mutsig2_images.part000000000096/LDHAL6B.2_1150_40000_0.041075_0.31775_0.0471.png
                gene_name: LDHAL6B
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.049 

Current progress: 67 percent done.
LDHC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.017574e-03	ci left: 9.875220e-01	ci right 9.915852e-01	k: 9897	n:10000
KS ci ratio: 1.365061e-02	ci left: 8.856497e-01	ci right 8.979211e-01	k: 8919	n:10000
LDHC   10000 perm   1 sec   (6720 perm/sec)   p_kst 8.919000e-01   p_cons 9.897000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LDHC.2_1027_10000_0.8919_0.9897_1.png
                gene_name: LDHC
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
LDLRAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.463999e-02	ci left: 4.255526e-01	ci right 4.450851e-01	k: 4353	n:10000
KS ci ratio: 4.616116e-02	ci left: 4.092047e-01	ci right 4.286425e-01	k: 4189	n:10000
LDLRAD1   10000 perm   1 sec   (6903 perm/sec)   p_kst 4.189000e-01   p_cons 4.353000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LDLRAD1.2_642_10000_0.4189_0.4353_1.png
                gene_name: LDLRAD1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
LDOC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.222691e-01	ci left: 8.747398e-02	ci right 9.896426e-02	k: 931	n:10000
Cons ci ratio: 6.740994e-02	ci left: 2.441069e-01	ci right 2.612374e-01	k: 2526	n:10000
KS ci ratio: 1.303765e-01	ci left: 7.747081e-02	ci right 8.837361e-02	k: 828	n:10000
LDOC1   10000 perm   1 sec   (7079 perm/sec)   p_kst 8.280000e-02   p_cons 2.526000e-01   p_joint 9.310000e-02

Joint ci ratio: 8.760394e-02	ci left: 8.699967e-02	ci right 9.501970e-02	k: 1819	n:20000
Cons ci ratio: 4.732184e-02	ci left: 2.493672e-01	ci right 2.615040e-01	k: 5108	n:20000
KS ci ratio: 9.114699e-02	ci left: 8.077881e-02	ci right 8.854244e-02	k: 1692	n:20000
LDOC1   20000 perm   3 sec   (6344 perm/sec)   p_kst 8.460000e-02   p_cons 2.554000e-01   p_joint 9.095000e-02

Outputting figure to mutsig2_images.part000000000096/LDOC1.2_445_20000_0.0846_0.2554_0.09095.png
                gene_name: LDOC1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.095 

Current progress: 74 percent done.
LECT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.760380e-02	ci left: 8.247294e-01	ci right 8.394766e-01	k: 8322	n:10000
KS ci ratio: 1.309951e-02	ci left: 8.935428e-01	ci right 9.054233e-01	k: 8996	n:10000
LECT1   10000 perm   1 sec   (6693 perm/sec)   p_kst 8.996000e-01   p_cons 8.322000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LECT1.2_1033_10000_0.8996_0.8322_1.png
                gene_name: LECT1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
LENG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.599533e-02	ci left: 8.502907e-01	ci right 8.641005e-01	k: 8573	n:10000
Cons ci ratio: 1.020487e-02	ci left: 9.316454e-01	ci right 9.412984e-01	k: 9366	n:10000
KS ci ratio: 1.188540e-01	ci left: 9.224042e-02	ci right 1.039949e-01	k: 980	n:10000
LENG1   10000 perm   1 sec   (6966 perm/sec)   p_kst 9.800000e-02   p_cons 9.366000e-01   p_joint 8.573000e-01

Joint ci ratio: 8.128209e-03	ci left: 9.170219e-01	ci right 9.245552e-01	k: 18417	n:20000
Cons ci ratio: 7.119281e-03	ci left: 9.347224e-01	ci right 9.414495e-01	k: 18763	n:20000
KS ci ratio: 8.338596e-02	ci left: 9.533591e-02	ci right 1.036809e-01	k: 1989	n:20000
LENG1   20000 perm   3 sec   (6183 perm/sec)   p_kst 9.945000e-02   p_cons 9.381500e-01   p_joint 9.208500e-01

Outputting figure to mutsig2_images.part000000000096/LENG1.2_811_20000_0.09945_0.93815_0.92085.png
                gene_name: LENG1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.92 

Current progress: 78 percent done.
LETMD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.225711e-02	ci left: 5.865064e-01	ci right 6.058375e-01	k: 5962	n:10000
KS ci ratio: 2.294549e-02	ci left: 7.361346e-01	ci right 7.533227e-01	k: 7448	n:10000
LETMD1   10000 perm   1 sec   (6848 perm/sec)   p_kst 7.448000e-01   p_cons 5.962000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LETMD1.2_1119_10000_0.7448_0.5962_1.png
                gene_name: LETMD1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
LGALS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.225679e-02	ci left: 9.052487e-01	ci right 9.165106e-01	k: 9110	n:10000
Cons ci ratio: 2.488745e-02	ci left: 7.037201e-01	ci right 7.215559e-01	k: 7127	n:10000
KS ci ratio: 2.527676e-02	ci left: 6.972641e-01	ci right 7.152157e-01	k: 7063	n:10000
LGALS12   10000 perm   1 sec   (6746 perm/sec)   p_kst 7.063000e-01   p_cons 7.127000e-01   p_joint 9.110000e-01

Outputting figure to mutsig2_images.part000000000096/LGALS12.2_1050_10000_0.7063_0.7127_0.911.png
                gene_name: LGALS12
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 83 percent done.
LGALS14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.577789e-01	ci left: 1.968303e-02	ci right 2.559958e-02	k: 225	n:10000
Cons ci ratio: 1.799496e-01	ci left: 4.121131e-02	ci right 4.945618e-02	k: 452	n:10000
KS ci ratio: 1.017651e-01	ci left: 1.225867e-01	ci right 1.358301e-01	k: 1291	n:10000
LGALS14   10000 perm   1 sec   (6899 perm/sec)   p_kst 1.291000e-01   p_cons 4.520000e-02   p_joint 2.250000e-02

Joint ci ratio: 1.983707e-01	ci left: 1.724818e-02	ci right 2.109342e-02	k: 382	n:20000
Cons ci ratio: 1.279133e-01	ci left: 4.197441e-02	ci right 4.775885e-02	k: 896	n:20000
KS ci ratio: 7.226545e-02	ci left: 1.235960e-01	ci right 1.329123e-01	k: 2564	n:20000
LGALS14   20000 perm   3 sec   (5800 perm/sec)   p_kst 1.282000e-01   p_cons 4.480000e-02   p_joint 1.910000e-02

Joint ci ratio: 1.966889e-01	ci left: 1.178058e-02	ci right 1.438165e-02	k: 391	n:30000
Cons ci ratio: 1.039371e-01	ci left: 4.290919e-02	ci right 4.764604e-02	k: 1357	n:30000
KS ci ratio: 5.846997e-02	ci left: 1.264771e-01	ci right 1.341280e-01	k: 3908	n:30000
LGALS14   30000 perm   6 sec   (5368 perm/sec)   p_kst 1.302667e-01   p_cons 4.523333e-02   p_joint 1.303333e-02

Joint ci ratio: 1.724683e-01	ci left: 1.164957e-02	ci right 1.387200e-02	k: 509	n:40000
Cons ci ratio: 8.977046e-02	ci left: 4.345383e-02	ci right 4.756248e-02	k: 1819	n:40000
KS ci ratio: 5.088953e-02	ci left: 1.258780e-01	ci right 1.324760e-01	k: 5166	n:40000
LGALS14   40000 perm   8 sec   (5248 perm/sec)   p_kst 1.291500e-01   p_cons 4.547500e-02   p_joint 1.272500e-02

Joint ci ratio: 1.671502e-01	ci left: 9.970022e-03	ci right 1.180743e-02	k: 543	n:50000
Cons ci ratio: 8.042303e-02	ci left: 4.353285e-02	ci right 4.720017e-02	k: 2267	n:50000
KS ci ratio: 4.542323e-02	ci left: 1.266875e-01	ci right 1.325956e-01	k: 6481	n:50000
LGALS14   50000 perm   10 sec   (5173 perm/sec)   p_kst 1.296200e-01   p_cons 4.534000e-02   p_joint 1.086000e-02

Joint ci ratio: 1.405415e-01	ci left: 1.189975e-02	ci right 1.371450e-02	k: 767	n:60000
Cons ci ratio: 7.378018e-02	ci left: 4.327310e-02	ci right 4.660443e-02	k: 2695	n:60000
KS ci ratio: 4.128103e-02	ci left: 1.279464e-01	ci right 1.333560e-01	k: 7838	n:60000
LGALS14   60000 perm   12 sec   (5094 perm/sec)   p_kst 1.306333e-01   p_cons 4.491667e-02   p_joint 1.278333e-02

Joint ci ratio: 1.430446e-01	ci left: 9.854552e-03	ci right 1.138642e-02	k: 742	n:70000
Cons ci ratio: 6.845931e-02	ci left: 4.320905e-02	ci right 4.628598e-02	k: 3131	n:70000
KS ci ratio: 3.824169e-02	ci left: 1.280128e-01	ci right 1.330179e-01	k: 9135	n:70000
LGALS14   70000 perm   14 sec   (5003 perm/sec)   p_kst 1.305000e-01   p_cons 4.472857e-02   p_joint 1.060000e-02

Joint ci ratio: 1.235593e-01	ci left: 1.165675e-02	ci right 1.320391e-02	k: 993	n:80000
Cons ci ratio: 6.406063e-02	ci left: 4.327834e-02	ci right 4.615480e-02	k: 3576	n:80000
KS ci ratio: 3.573671e-02	ci left: 1.283962e-01	ci right 1.330806e-01	k: 10458	n:80000
LGALS14   80000 perm   16 sec   (4924 perm/sec)   p_kst 1.307250e-01   p_cons 4.470000e-02   p_joint 1.241250e-02

Joint ci ratio: 1.174133e-01	ci left: 1.151457e-02	ci right 1.296156e-02	k: 1100	n:90000
Cons ci ratio: 6.015580e-02	ci left: 4.369857e-02	ci right 4.641974e-02	k: 4054	n:90000
KS ci ratio: 3.370176e-02	ci left: 1.284711e-01	ci right 1.328861e-01	k: 11760	n:90000
LGALS14   90000 perm   19 sec   (4853 perm/sec)   p_kst 1.306667e-01   p_cons 4.504444e-02   p_joint 1.222222e-02

Joint ci ratio: 1.113574e-01	ci left: 1.155795e-02	ci right 1.293056e-02	k: 1223	n:100000
Cons ci ratio: 5.719227e-02	ci left: 4.358526e-02	ci right 4.616122e-02	k: 4486	n:100000
KS ci ratio: 3.196215e-02	ci left: 1.286563e-01	ci right 1.328451e-01	k: 13074	n:100000
LGALS14   100000 perm   21 sec   (4780 perm/sec)   p_kst 1.307400e-01   p_cons 4.486000e-02   p_joint 1.223000e-02

Joint ci ratio: 1.055970e-01	ci left: 1.171896e-02	ci right 1.303421e-02	k: 1360	n:110000
Cons ci ratio: 5.443667e-02	ci left: 4.379137e-02	ci right 4.625087e-02	k: 4951	n:110000
KS ci ratio: 3.048265e-02	ci left: 1.286952e-01	ci right 1.326879e-01	k: 14375	n:110000
LGALS14   110000 perm   23 sec   (4707 perm/sec)   p_kst 1.306818e-01   p_cons 4.500909e-02   p_joint 1.236364e-02

Joint ci ratio: 1.011266e-01	ci left: 1.174089e-02	ci right 1.299951e-02	k: 1483	n:120000
Cons ci ratio: 5.219600e-02	ci left: 4.371871e-02	ci right 4.607001e-02	k: 5386	n:120000
KS ci ratio: 2.913889e-02	ci left: 1.291372e-01	ci right 1.329640e-01	k: 15725	n:120000
LGALS14   120000 perm   26 sec   (4641 perm/sec)   p_kst 1.310417e-01   p_cons 4.488333e-02   p_joint 1.235833e-02

Joint ci ratio: 9.730237e-02	ci left: 1.173041e-02	ci right 1.293764e-02	k: 1602	n:130000
Cons ci ratio: 5.014344e-02	ci left: 4.377301e-02	ci right 4.603196e-02	k: 5836	n:130000
KS ci ratio: 2.799811e-02	ci left: 1.291932e-01	ci right 1.328694e-01	k: 17033	n:130000
LGALS14   130000 perm   28 sec   (4572 perm/sec)   p_kst 1.310231e-01   p_cons 4.489231e-02   p_joint 1.232308e-02

Outputting figure to mutsig2_images.part000000000096/LGALS14.2_542_130000_0.13102_0.044892_0.012323.png
                gene_name: LGALS14
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 85 percent done.
LGALS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.937791e-02	ci left: 3.769402e-01	ci right 3.961259e-01	k: 3865	n:10000
KS ci ratio: 2.090368e-02	ci left: 7.703319e-01	ci right 7.867055e-01	k: 7786	n:10000
LGALS9   10000 perm   2 sec   (6593 perm/sec)   p_kst 7.786000e-01   p_cons 3.865000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LGALS9.2_1112_10000_0.7786_0.3865_1.png
                gene_name: LGALS9
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
LGI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.205714e-02	ci left: 4.549859e-01	ci right 4.746346e-01	k: 4648	n:10000
KS ci ratio: 5.530440e-02	ci left: 3.250533e-01	ci right 3.436433e-01	k: 3343	n:10000
LGI3   10000 perm   2 sec   (6334 perm/sec)   p_kst 3.343000e-01   p_cons 4.648000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000096/LGI3.2_1679_10000_0.3343_0.4648_1.png
                gene_name: LGI3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
LGR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.058238e-01	ci left: 3.138896e-02	ci right 3.868516e-02	k: 349	n:10000
Cons ci ratio: 2.689486e-01	ci left: 1.799971e-02	ci right 2.368423e-02	k: 207	n:10000
KS ci ratio: 2.613224e-02	ci left: 6.831489e-01	ci right 7.013390e-01	k: 6923	n:10000
LGR5   10000 perm   2 sec   (5947 perm/sec)   p_kst 6.923000e-01   p_cons 2.070000e-02   p_joint 3.490000e-02

Joint ci ratio: 1.456506e-01	ci left: 3.239930e-02	ci right 3.753705e-02	k: 698	n:20000
Cons ci ratio: 1.824882e-01	ci left: 2.048931e-02	ci right 2.465110e-02	k: 450	n:20000
KS ci ratio: 1.864381e-02	ci left: 6.820297e-01	ci right 6.949154e-01	k: 13770	n:20000
LGR5   20000 perm   4 sec   (5366 perm/sec)   p_kst 6.885000e-01   p_cons 2.250000e-02   p_joint 3.490000e-02

Joint ci ratio: 1.539028e-01	ci left: 1.953562e-02	ci right 2.282469e-02	k: 634	n:30000
Cons ci ratio: 1.629124e-01	ci left: 1.738915e-02	ci right 2.050500e-02	k: 567	n:30000
KS ci ratio: 1.513765e-02	ci left: 6.856357e-01	ci right 6.961273e-01	k: 20727	n:30000
LGR5   30000 perm   6 sec   (5115 perm/sec)   p_kst 6.909000e-01   p_cons 1.890000e-02   p_joint 2.113333e-02

Joint ci ratio: 1.384395e-01	ci left: 1.828815e-02	ci right 2.103221e-02	k: 785	n:40000
Cons ci ratio: 1.425650e-01	ci left: 1.722613e-02	ci right 1.989441e-02	k: 741	n:40000
KS ci ratio: 1.309969e-02	ci left: 6.866713e-01	ci right 6.957509e-01	k: 27649	n:40000
LGR5   40000 perm   8 sec   (4941 perm/sec)   p_kst 6.912250e-01   p_cons 1.852500e-02   p_joint 1.962500e-02

Joint ci ratio: 1.198708e-01	ci left: 1.968342e-02	ci right 2.221262e-02	k: 1046	n:50000
Cons ci ratio: 1.271308e-01	ci left: 1.747251e-02	ci right 1.986384e-02	k: 932	n:50000
KS ci ratio: 1.170536e-02	ci left: 6.875710e-01	ci right 6.956867e-01	k: 34582	n:50000
LGR5   50000 perm   10 sec   (4801 perm/sec)   p_kst 6.916400e-01   p_cons 1.864000e-02   p_joint 2.092000e-02

Joint ci ratio: 1.124054e-01	ci left: 1.874885e-02	ci right 2.099793e-02	k: 1191	n:60000
Cons ci ratio: 1.168329e-01	ci left: 1.733966e-02	ci right 1.950728e-02	k: 1104	n:60000
KS ci ratio: 1.069945e-02	ci left: 6.873687e-01	ci right 6.947794e-01	k: 41465	n:60000
LGR5   60000 perm   13 sec   (4689 perm/sec)   p_kst 6.910833e-01   p_cons 1.840000e-02   p_joint 1.985000e-02

Joint ci ratio: 1.027067e-01	ci left: 1.933770e-02	ci right 2.144518e-02	k: 1426	n:70000
Cons ci ratio: 1.067069e-01	ci left: 1.790408e-02	ci right 1.993608e-02	k: 1323	n:70000
KS ci ratio: 9.904401e-03	ci left: 6.877052e-01	ci right 6.945647e-01	k: 48380	n:70000
LGR5   70000 perm   15 sec   (4588 perm/sec)   p_kst 6.911429e-01   p_cons 1.890000e-02   p_joint 2.037143e-02

Joint ci ratio: 9.938574e-02	ci left: 1.812615e-02	ci right 2.003396e-02	k: 1525	n:80000
Cons ci ratio: 1.004307e-01	ci left: 1.774816e-02	ci right 1.963698e-02	k: 1494	n:80000
KS ci ratio: 9.277053e-03	ci left: 6.873587e-01	ci right 6.937775e-01	k: 55246	n:80000
LGR5   80000 perm   18 sec   (4442 perm/sec)   p_kst 6.905750e-01   p_cons 1.867500e-02   p_joint 1.906250e-02

Joint ci ratio: 8.850148e-02	ci left: 2.038836e-02	ci right 2.228712e-02	k: 1919	n:90000
Cons ci ratio: 9.442634e-02	ci left: 1.790094e-02	ci right 1.968582e-02	k: 1690	n:90000
KS ci ratio: 8.748259e-03	ci left: 6.874570e-01	ci right 6.935085e-01	k: 62144	n:90000
LGR5   90000 perm   21 sec   (4319 perm/sec)   p_kst 6.904889e-01   p_cons 1.877778e-02   p_joint 2.132222e-02

Outputting figure to mutsig2_images.part000000000096/LGR5.2_2796_90000_0.69049_0.018778_0.021322.png
                gene_name: LGR5
               theta_stop: 0.094 
                    nperm: 90000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 91 percent done.
LHFPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.831486e-01	ci left: 3.977673e-02	ci right 4.789171e-02	k: 437	n:10000
Cons ci ratio: 3.093700e-01	ci left: 1.335536e-02	ci right 1.833248e-02	k: 157	n:10000
KS ci ratio: 1.412003e-02	ci left: 8.787895e-01	ci right 8.913852e-01	k: 8852	n:10000
LHFPL2   10000 perm   2 sec   (6406 perm/sec)   p_kst 8.852000e-01   p_cons 1.570000e-02   p_joint 4.370000e-02

Joint ci ratio: 1.409142e-01	ci left: 3.461962e-02	ci right 3.991600e-02	k: 744	n:20000
Cons ci ratio: 2.130137e-01	ci left: 1.487481e-02	ci right 1.846769e-02	k: 332	n:20000
KS ci ratio: 1.000286e-02	ci left: 8.802943e-01	ci right 8.891935e-01	k: 17696	n:20000
LHFPL2   20000 perm   4 sec   (5661 perm/sec)   p_kst 8.848000e-01   p_cons 1.660000e-02   p_joint 3.720000e-02

Joint ci ratio: 1.135611e-01	ci left: 3.602672e-02	ci right 4.039662e-02	k: 1145	n:30000
Cons ci ratio: 1.769217e-01	ci left: 1.467425e-02	ci right 1.755390e-02	k: 482	n:30000
KS ci ratio: 8.193668e-03	ci left: 8.804576e-01	ci right 8.877345e-01	k: 26524	n:30000
LHFPL2   30000 perm   5 sec   (5467 perm/sec)   p_kst 8.841333e-01   p_cons 1.606667e-02   p_joint 3.816667e-02

Joint ci ratio: 6.371407e-02	ci left: 8.368893e-02	ci right 8.922127e-02	k: 3457	n:40000
Cons ci ratio: 1.528578e-01	ci left: 1.493743e-02	ci right 1.743352e-02	k: 646	n:40000
KS ci ratio: 7.102139e-03	ci left: 8.807709e-01	ci right 8.870733e-01	k: 35358	n:40000
LHFPL2   40000 perm   7 sec   (5336 perm/sec)   p_kst 8.839500e-01   p_cons 1.615000e-02   p_joint 8.642500e-02

Joint ci ratio: 5.696968e-02	ci left: 8.403040e-02	ci right 8.897773e-02	k: 4324	n:50000
Cons ci ratio: 1.380053e-01	ci left: 1.478310e-02	ci right 1.699362e-02	k: 793	n:50000
KS ci ratio: 6.338956e-03	ci left: 8.815448e-01	ci right 8.871705e-01	k: 44219	n:50000
LHFPL2   50000 perm   10 sec   (5230 perm/sec)   p_kst 8.843800e-01   p_cons 1.586000e-02   p_joint 8.648000e-02

Joint ci ratio: 5.190210e-02	ci left: 8.455893e-02	ci right 8.908113e-02	k: 5208	n:60000
Cons ci ratio: 1.255002e-01	ci left: 1.499499e-02	ci right 1.701889e-02	k: 959	n:60000
KS ci ratio: 5.802531e-03	ci left: 8.812257e-01	ci right 8.863704e-01	k: 53029	n:60000
LHFPL2   60000 perm   12 sec   (5087 perm/sec)   p_kst 8.838167e-01   p_cons 1.598333e-02   p_joint 8.680000e-02

Joint ci ratio: 5.285884e-02	ci left: 7.091417e-02	ci right 7.477847e-02	k: 5098	n:70000
Cons ci ratio: 1.148944e-01	ci left: 1.541654e-02	ci right 1.730957e-02	k: 1144	n:70000
KS ci ratio: 5.390052e-03	ci left: 8.807256e-01	ci right 8.854997e-01	k: 61819	n:70000
LHFPL2   70000 perm   14 sec   (4972 perm/sec)   p_kst 8.831286e-01   p_cons 1.634286e-02   p_joint 7.282857e-02

Joint ci ratio: 5.990812e-02	ci left: 4.927609e-02	ci right 5.233159e-02	k: 4063	n:80000
Cons ci ratio: 1.085574e-01	ci left: 1.516618e-02	ci right 1.691917e-02	k: 1282	n:80000
KS ci ratio: 5.060908e-03	ci left: 8.800972e-01	ci right 8.845750e-01	k: 70588	n:80000
LHFPL2   80000 perm   16 sec   (4878 perm/sec)   p_kst 8.823500e-01   p_cons 1.602500e-02   p_joint 5.078750e-02

Joint ci ratio: 5.665186e-02	ci left: 4.907834e-02	ci right 5.195072e-02	k: 4545	n:90000
Cons ci ratio: 1.028342e-01	ci left: 1.507118e-02	ci right 1.671579e-02	k: 1429	n:90000
KS ci ratio: 4.757529e-03	ci left: 8.808374e-01	ci right 8.850490e-01	k: 79466	n:90000
LHFPL2   90000 perm   19 sec   (4791 perm/sec)   p_kst 8.829556e-01   p_cons 1.587778e-02   p_joint 5.050000e-02

Joint ci ratio: 5.164175e-02	ci left: 5.307136e-02	ci right 5.589455e-02	k: 5447	n:100000
Cons ci ratio: 9.721237e-02	ci left: 1.522161e-02	ci right 1.678664e-02	k: 1599	n:100000
KS ci ratio: 4.514590e-03	ci left: 8.808910e-01	ci right 8.848868e-01	k: 88290	n:100000
LHFPL2   100000 perm   21 sec   (4695 perm/sec)   p_kst 8.829000e-01   p_cons 1.599000e-02   p_joint 5.447000e-02

Outputting figure to mutsig2_images.part000000000096/LHFPL2.2_695_100000_0.8829_0.01599_0.05447.png
                gene_name: LHFPL2
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.056 

Current progress: 93 percent done.
LHFPL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.483114e-02	ci left: 4.234587e-01	ci right 4.429803e-01	k: 4332	n:10000
Cons ci ratio: 1.520250e-02	ci left: 8.625359e-01	ci right 8.758482e-01	k: 8693	n:10000
KS ci ratio: 4.483114e-02	ci left: 4.234587e-01	ci right 4.429803e-01	k: 4332	n:10000
LHFPL5   10000 perm   1 sec   (6733 perm/sec)   p_kst 4.332000e-01   p_cons 8.693000e-01   p_joint 4.332000e-01

Outputting figure to mutsig2_images.part000000000096/LHFPL5.2_672_10000_0.4332_0.8693_0.4332.png
                gene_name: LHFPL5
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 96 percent done.
LHPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.200595e-02	ci left: 9.086422e-01	ci right 9.197151e-01	k: 9143	n:10000
Cons ci ratio: 3.304679e-02	ci left: 5.747677e-01	ci right 5.941831e-01	k: 5845	n:10000
KS ci ratio: 3.179695e-02	ci left: 5.934319e-01	ci right 6.127080e-01	k: 6031	n:10000
LHPP   10000 perm   1 sec   (7128 perm/sec)   p_kst 6.031000e-01   p_cons 5.845000e-01   p_joint 9.143000e-01

Outputting figure to mutsig2_images.part000000000096/LHPP.2_841_10000_0.6031_0.5845_0.9143.png
                gene_name: LHPP
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 98 percent done.
LHX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.521745e-02	ci left: 5.434917e-01	ci right 5.630773e-01	k: 5533	n:10000
Cons ci ratio: 9.784492e-02	ci left: 1.314920e-01	ci right 1.451194e-01	k: 1382	n:10000
KS ci ratio: 1.926953e-02	ci left: 7.975022e-01	ci right 8.131196e-01	k: 8054	n:10000
LHX3   10000 perm   2 sec   (6642 perm/sec)   p_kst 8.054000e-01   p_cons 1.382000e-01   p_joint 5.533000e-01

Outputting figure to mutsig2_images.part000000000096/LHX3.2_1316_10000_0.8054_0.1382_0.5533.png
                gene_name: LHX3
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000096
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 96 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1702>
Subject: Job 9893999: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1702>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000097> was used as the working directory.
Started at Sat Oct  6 00:16:48 2012
Results reported at Sat Oct  6 00:25:18 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000097.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000097.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 97  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000097.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    512.09 sec.
    Max Memory :      3545 MB
    Max Swap   :      5945 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
97
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 97
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 97: processing genes 8655 - 8745
Calculating significance of each gene.
Using projection method.
8655	LHX8	1.897721e-01
8656	LHX9	6.549116e-02
8657	LIAS	2.103362e-01
8658	LIF	1
8659	LIFR	1.052212e-07
8660	LIG1	8.691767e-01
8661	LIG3	5.802746e-01
8662	LIG4	2.001893e-01
8663	LILRA1	4.783986e-01
8664	LILRA2	7.721323e-01
8665	LILRA3	4.904552e-01
8666	LILRA4	1.858507e-01
8667	LILRA5	1.904597e-01
8668	LILRA6	7.249249e-01
8669	LILRB1	6.448384e-02
8670	LILRB2	2.183151e-01
8671	LILRB3	6.620564e-01
8672	LILRB4	3.095925e-01
8673	LILRB5	1.453721e-03
8674	LIM2	4.760311e-01
8675	LIMA1	1.800742e-01
8676	LIMCH1	2.712631e-01
8677	LIMD1	1
8678	LIMD2	1
8679	LIME1	3.511981e-01
8680	LIMK1	3.282995e-01
8681	LIMK2	5.163517e-01
8682	LIMS1	7.844835e-01
8683	LIMS2	5.810619e-01
8684	LIN28A	1
8685	LIN28B	7.733714e-01
8686	LIN37	6.804920e-01
8687	LIN52	1
8688	LIN54	9.597427e-01
8689	LIN7A	1.210619e-01
8690	LIN7B	1
8691	LIN7C	1
8692	LIN9	1.753841e-01
8693	LINGO1	7.067092e-01
8694	LINGO2	7.665712e-03
8695	LINGO3	1
8696	LINGO4	4.052926e-01
8697	LINS1	8.858338e-01
8698	LIPA	7.111362e-01
8699	LIPC	4.388189e-01
8700	LIPE	7.735337e-01
8701	LIPF	4.239708e-01
8702	LIPG	7.404730e-01
8703	LIPH	4.439063e-01
8704	LIPI	1.145299e-01
8705	LIPJ	3.324614e-01
8706	LIPK	5.568227e-01
8707	LIPN	3.164623e-01
8708	LIPT1	2.115013e-01
8709	LITAF	1
8710	LIX1	8.755240e-02
8711	LIX1L	2.313667e-01
8712	LLGL1	9.975282e-01
8713	LLGL2	9.012587e-01
8714	LLPH	1
8715	LMAN1	6.198326e-01
8716	LMAN1L	8.578772e-01
8717	LMAN2	6.383479e-01
8718	LMAN2L	1
8719	LMBR1	6.549440e-01
8720	LMBR1L	1
8721	LMBRD1	1.827930e-02
8722	LMBRD2	9.575579e-02
8723	LMCD1	2.261971e-01
8724	LMF1	9.387440e-01
8725	LMF2	1
8726	LMLN	8.644354e-01
8727	LMNA	1
8728	LMNB1	3.477054e-01
8729	LMNB2	9.360174e-01
8730	LMO1	1
8731	LMO2	6.371071e-01
8732	LMO3	2.587061e-01
8733	LMO4	6.453148e-01
8734	LMO7	5.212454e-02
8735	LMOD1	6.752250e-01
8736	LMOD2	4.648112e-01
8737	LMOD3	6.141278e-01
8738	LMTK2	9.565051e-01
8739	LMTK3	9.899105e-01
8740	LMX1A	4.240351e-02
8741	LMX1B	3.162197e-01
8742	LNP1	2.013561e-01
8743	LNPEP	2.510152e-01
8744	LNX1	6.199818e-02
8745	LNX2	2.342632e-02
Done

Running MutSig 2:
Scatter job 97: processing genes 8655 - 8745
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LIFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.178368e-02	ci left: 5.936327e-01	ci right 6.129071e-01	k: 6033	n:10000
Cons ci ratio: 3.762664e-02	ci left: 5.105536e-01	ci right 5.302345e-01	k: 5204	n:10000
KS ci ratio: 3.758145e-02	ci left: 5.111539e-01	ci right 5.308339e-01	k: 5210	n:10000
LIFR   10000 perm   3 sec   (3939 perm/sec)   p_kst 5.210000e-01   p_cons 5.204000e-01   p_joint 6.033000e-01

Outputting figure to mutsig2_images.part000000000097/LIFR.24_3370_10000_0.521_0.5204_0.6033.png
                gene_name: LIFR
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 2 percent done.
LMO7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.770970e-03	ci left: 9.480432e-01	ci right 9.564908e-01	k: 9524	n:10000
KS ci ratio: 2.730395e-02	ci left: 6.640082e-01	ci right 6.824908e-01	k: 6733	n:10000
LMO7   10000 perm   3 sec   (3761 perm/sec)   p_kst 6.733000e-01   p_cons 9.524000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LMO7.19_5250_10000_0.6733_0.9524_1.png
                gene_name: LMO7
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
LILRB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.494067e-02	ci left: 8.665194e-01	ci right 8.796624e-01	k: 8732	n:10000
Cons ci ratio: 1.225679e-02	ci left: 9.052487e-01	ci right 9.165106e-01	k: 9110	n:10000
KS ci ratio: 2.471742e-02	ci left: 7.065452e-01	ci right 7.243291e-01	k: 7155	n:10000
LILRB5   10000 perm   2 sec   (5222 perm/sec)   p_kst 7.155000e-01   p_cons 9.110000e-01   p_joint 8.732000e-01

Outputting figure to mutsig2_images.part000000000097/LILRB5.11_1828_10000_0.7155_0.911_0.8732.png
                gene_name: LILRB5
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 5 percent done.
LNX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.157234e-02	ci left: 1.798919e-01	ci right 1.952906e-01	k: 1875	n:10000
Cons ci ratio: 4.463091e-02	ci left: 4.256523e-01	ci right 4.451853e-01	k: 4354	n:10000
KS ci ratio: 7.757470e-02	ci left: 1.954493e-01	ci right 2.113238e-01	k: 2033	n:10000
LNX1   10000 perm   2 sec   (4506 perm/sec)   p_kst 2.033000e-01   p_cons 4.354000e-01   p_joint 1.875000e-01

Outputting figure to mutsig2_images.part000000000097/LNX1.11_2323_10000_0.2033_0.4354_0.1875.png
                gene_name: LNX1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 7 percent done.
LIMCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.349092e-02	ci left: 5.682486e-01	ci right 5.877059e-01	k: 5780	n:10000
Cons ci ratio: 3.931972e-02	ci left: 4.885519e-01	ci right 5.082490e-01	k: 4984	n:10000
KS ci ratio: 4.355812e-02	ci left: 4.376211e-01	ci right 4.572096e-01	k: 4474	n:10000
LIMCH1   10000 perm   2 sec   (4432 perm/sec)   p_kst 4.474000e-01   p_cons 4.984000e-01   p_joint 5.780000e-01

Outputting figure to mutsig2_images.part000000000097/LIMCH1.9_3388_10000_0.4474_0.4984_0.578.png
                gene_name: LIMCH1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 8 percent done.
LILRB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.116726e-02	ci left: 9.196628e-01	ci right 9.300880e-01	k: 9250	n:10000
Cons ci ratio: 2.157537e-02	ci left: 7.590934e-01	ci right 7.757506e-01	k: 7675	n:10000
KS ci ratio: 2.978760e-02	ci left: 6.243702e-01	ci right 6.433517e-01	k: 6339	n:10000
LILRB1   10000 perm   2 sec   (4809 perm/sec)   p_kst 6.339000e-01   p_cons 7.675000e-01   p_joint 9.250000e-01

Outputting figure to mutsig2_images.part000000000097/LILRB1.8_2015_10000_0.6339_0.7675_0.925.png
                gene_name: LILRB1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 10 percent done.
LIMA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.855357e-02	ci left: 8.092795e-01	ci right 8.245354e-01	k: 8170	n:10000
Cons ci ratio: 2.345856e-02	ci left: 7.275456e-01	ci right 7.449166e-01	k: 7363	n:10000
KS ci ratio: 3.633558e-02	ci left: 5.279684e-01	ci right 5.476096e-01	k: 5378	n:10000
LIMA1   10000 perm   2 sec   (4914 perm/sec)   p_kst 5.378000e-01   p_cons 7.363000e-01   p_joint 8.170000e-01

Outputting figure to mutsig2_images.part000000000097/LIMA1.8_2323_10000_0.5378_0.7363_0.817.png
                gene_name: LIMA1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 12 percent done.
LINGO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.245171e-02	ci left: 5.835963e-01	ci right 6.029494e-01	k: 5933	n:10000
KS ci ratio: 5.669586e-03	ci left: 9.766355e-01	ci right 9.822803e-01	k: 9796	n:10000
LINGO2   10000 perm   2 sec   (4307 perm/sec)   p_kst 9.796000e-01   p_cons 5.933000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LINGO2.8_1825_10000_0.9796_0.5933_1.png
                gene_name: LINGO2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
LMTK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.792091e-02	ci left: 3.911750e-01	ci right 4.104828e-01	k: 4008	n:10000
KS ci ratio: 2.237232e-02	ci left: 7.457390e-01	ci right 7.627127e-01	k: 7543	n:10000
LMTK2   10000 perm   2 sec   (4490 perm/sec)   p_kst 7.543000e-01   p_cons 4.008000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LMTK2.8_4568_10000_0.7543_0.4008_1.png
                gene_name: LMTK2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
LNPEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.234863e-02	ci left: 2.743835e-01	ci right 2.921429e-01	k: 2832	n:10000
Cons ci ratio: 1.608669e-02	ci left: 8.488632e-01	ci right 8.627288e-01	k: 8559	n:10000
KS ci ratio: 1.138976e-01	ci left: 9.983694e-02	ci right 1.119937e-01	k: 1058	n:10000
LNPEP   10000 perm   2 sec   (4676 perm/sec)   p_kst 1.058000e-01   p_cons 8.559000e-01   p_joint 2.832000e-01

Joint ci ratio: 5.181454e-02	ci left: 2.167018e-01	ci right 2.282790e-01	k: 4449	n:20000
Cons ci ratio: 1.138574e-02	ci left: 8.507026e-01	ci right 8.604937e-01	k: 17113	n:20000
KS ci ratio: 8.058186e-02	ci left: 1.015206e-01	ci right 1.100944e-01	k: 2115	n:20000
LNPEP   20000 perm   5 sec   (4275 perm/sec)   p_kst 1.057500e-01   p_cons 8.556500e-01   p_joint 2.224500e-01

Outputting figure to mutsig2_images.part000000000097/LNPEP.8_3150_20000_0.10575_0.85565_0.22245.png
                gene_name: LNPEP
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 17 percent done.
LNX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541019e-02	ci left: 5.407869e-01	ci right 5.603836e-01	k: 5506	n:10000
Cons ci ratio: 3.114346e-02	ci left: 6.033719e-01	ci right 6.225622e-01	k: 6130	n:10000
KS ci ratio: 5.540393e-02	ci left: 3.242591e-01	ci right 3.428380e-01	k: 3335	n:10000
LNX2   10000 perm   2 sec   (4887 perm/sec)   p_kst 3.335000e-01   p_cons 6.130000e-01   p_joint 5.506000e-01

Outputting figure to mutsig2_images.part000000000097/LNX2.8_2109_10000_0.3335_0.613_0.5506.png
                gene_name: LNX2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 19 percent done.
LIG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.540162e-02	ci left: 4.172776e-01	ci right 4.367649e-01	k: 4270	n:10000
Cons ci ratio: 5.161556e-02	ci left: 3.562506e-01	ci right 3.752277e-01	k: 3657	n:10000
KS ci ratio: 6.093584e-02	ci left: 2.836945e-01	ci right 3.016265e-01	k: 2926	n:10000
LIG4   10000 perm   2 sec   (5221 perm/sec)   p_kst 2.926000e-01   p_cons 3.657000e-01   p_joint 4.270000e-01

Outputting figure to mutsig2_images.part000000000097/LIG4.7_2740_10000_0.2926_0.3657_0.427.png
                gene_name: LIG4
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 20 percent done.
LMBRD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.013503e-02	ci left: 6.189430e-01	ci right 6.379821e-01	k: 6285	n:10000
KS ci ratio: 1.746502e-02	ci left: 8.269673e-01	ci right 8.416374e-01	k: 8344	n:10000
LMBRD2   10000 perm   2 sec   (5242 perm/sec)   p_kst 8.344000e-01   p_cons 6.285000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LMBRD2.7_2156_10000_0.8344_0.6285_1.png
                gene_name: LMBRD2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
LHX9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.992190e-02	ci left: 4.809557e-01	ci right 5.006496e-01	k: 4908	n:10000
Cons ci ratio: 7.357380e-02	ci left: 2.128999e-01	ci right 2.292629e-01	k: 2210	n:10000
KS ci ratio: 4.040405e-02	ci left: 4.749603e-01	ci right 4.946485e-01	k: 4848	n:10000
LHX9   10000 perm   2 sec   (5583 perm/sec)   p_kst 4.848000e-01   p_cons 2.210000e-01   p_joint 4.908000e-01

Outputting figure to mutsig2_images.part000000000097/LHX9.6_1246_10000_0.4848_0.221_0.4908.png
                gene_name: LHX9
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 24 percent done.
LIN9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.123610e-01	ci left: 1.023714e-01	ci right 1.146577e-01	k: 1084	n:10000
Cons ci ratio: 5.454299e-02	ci left: 3.312097e-01	ci right 3.498832e-01	k: 3405	n:10000
KS ci ratio: 1.365803e-01	ci left: 7.088017e-02	ci right 8.136835e-02	k: 760	n:10000
LIN9   10000 perm   2 sec   (5621 perm/sec)   p_kst 7.600000e-02   p_cons 3.405000e-01   p_joint 1.084000e-01

Joint ci ratio: 8.645901e-02	ci left: 8.915632e-02	ci right 9.726239e-02	k: 1863	n:20000
Cons ci ratio: 3.998770e-02	ci left: 3.180123e-01	ci right 3.310388e-01	k: 6490	n:20000
KS ci ratio: 9.542997e-02	ci left: 7.407543e-02	ci right 8.154786e-02	k: 1555	n:20000
LIN9   20000 perm   4 sec   (5005 perm/sec)   p_kst 7.775000e-02   p_cons 3.245000e-01   p_joint 9.315000e-02

Outputting figure to mutsig2_images.part000000000097/LIN9.6_1737_20000_0.07775_0.3245_0.09315.png
                gene_name: LIN9
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.097 

Current progress: 25 percent done.
LIPI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.052554e-02	ci left: 4.734617e-01	ci right 4.931480e-01	k: 4833	n:10000
Cons ci ratio: 8.036185e-02	ci left: 1.844192e-01	ci right 1.999605e-01	k: 1921	n:10000
KS ci ratio: 1.743342e-02	ci left: 8.274759e-01	ci right 8.421285e-01	k: 8349	n:10000
LIPI   10000 perm   2 sec   (5453 perm/sec)   p_kst 8.349000e-01   p_cons 1.921000e-01   p_joint 4.833000e-01

Outputting figure to mutsig2_images.part000000000097/LIPI.6_1486_10000_0.8349_0.1921_0.4833.png
                gene_name: LIPI
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 27 percent done.
LMBRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
Cons ci ratio: 1.371664e-01	ci left: 7.029921e-02	ci right 8.074967e-02	k: 754	n:10000
KS ci ratio: 4.935709e-02	ci left: 3.771392e-01	ci right 3.963268e-01	k: 3867	n:10000
LMBRD1   10000 perm   2 sec   (5616 perm/sec)   p_kst 3.867000e-01   p_cons 7.540000e-02   p_joint 2.266000e-01

Joint ci ratio: 5.009438e-02	ci left: 2.284934e-01	ci right 2.402839e-01	k: 4687	n:20000
Cons ci ratio: 8.684489e-02	ci left: 8.842102e-02	ci right 9.649791e-02	k: 1848	n:20000
KS ci ratio: 3.499634e-02	ci left: 3.786968e-01	ci right 3.922365e-01	k: 7709	n:20000
LMBRD1   20000 perm   4 sec   (5028 perm/sec)   p_kst 3.854500e-01   p_cons 9.240000e-02   p_joint 2.343500e-01

Outputting figure to mutsig2_images.part000000000097/LMBRD1.6_1687_20000_0.38545_0.0924_0.23435.png
                gene_name: LMBRD1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 29 percent done.
LIG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.069749e-02	ci left: 7.737760e-01	ci right 7.900594e-01	k: 7820	n:10000
Cons ci ratio: 3.837199e-02	ci left: 5.007505e-01	ci right 5.204433e-01	k: 5106	n:10000
KS ci ratio: 2.713657e-02	ci left: 6.667271e-01	ci right 6.851703e-01	k: 6760	n:10000
LIG3   10000 perm   2 sec   (5405 perm/sec)   p_kst 6.760000e-01   p_cons 5.106000e-01   p_joint 7.820000e-01

Outputting figure to mutsig2_images.part000000000097/LIG3.5_3164_10000_0.676_0.5106_0.782.png
                gene_name: LIG3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 31 percent done.
LIMK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.042447e-02	ci left: 3.670904e-01	ci right 3.861815e-01	k: 3766	n:10000
Cons ci ratio: 1.108764e-01	ci left: 1.049071e-01	ci right 1.173205e-01	k: 1110	n:10000
KS ci ratio: 2.296963e-02	ci left: 7.357303e-01	ci right 7.529272e-01	k: 7444	n:10000
LIMK1   10000 perm   2 sec   (5688 perm/sec)   p_kst 7.444000e-01   p_cons 1.110000e-01   p_joint 3.766000e-01

Joint ci ratio: 3.586884e-02	ci left: 3.671384e-01	ci right 3.805983e-01	k: 7477	n:20000
Cons ci ratio: 7.860206e-02	ci left: 1.062360e-01	ci right 1.149776e-01	k: 2211	n:20000
KS ci ratio: 1.634245e-02	ci left: 7.359267e-01	ci right 7.481029e-01	k: 14841	n:20000
LIMK1   20000 perm   4 sec   (5138 perm/sec)   p_kst 7.420500e-01   p_cons 1.105500e-01   p_joint 3.738500e-01

Outputting figure to mutsig2_images.part000000000097/LIMK1.5_2008_20000_0.74205_0.11055_0.37385.png
                gene_name: LIMK1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 32 percent done.
LIMK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.315575e-02	ci left: 5.731628e-01	ci right 5.925889e-01	k: 5829	n:10000
Cons ci ratio: 2.524631e-02	ci left: 6.977684e-01	ci right 7.157111e-01	k: 7068	n:10000
KS ci ratio: 5.139383e-02	ci left: 3.582391e-01	ci right 3.772380e-01	k: 3677	n:10000
LIMK2   10000 perm   2 sec   (5122 perm/sec)   p_kst 3.677000e-01   p_cons 7.068000e-01   p_joint 5.829000e-01

Outputting figure to mutsig2_images.part000000000097/LIMK2.5_2394_10000_0.3677_0.7068_0.5829.png
                gene_name: LIMK2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 34 percent done.
LIX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.608017e-02	ci left: 8.489651e-01	ci right 8.628268e-01	k: 8560	n:10000
Cons ci ratio: 1.294683e-02	ci left: 8.956973e-01	ci right 9.074676e-01	k: 9017	n:10000
KS ci ratio: 2.699424e-02	ci left: 6.690435e-01	ci right 6.874525e-01	k: 6783	n:10000
LIX1   10000 perm   2 sec   (6000 perm/sec)   p_kst 6.783000e-01   p_cons 9.017000e-01   p_joint 8.560000e-01

Outputting figure to mutsig2_images.part000000000097/LIX1.5_873_10000_0.6783_0.9017_0.856.png
                gene_name: LIX1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 36 percent done.
LIAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.464415e-02	ci left: 5.516076e-01	ci right 5.711566e-01	k: 5614	n:10000
Cons ci ratio: 4.699584e-02	ci left: 4.005369e-01	ci right 4.199155e-01	k: 4102	n:10000
KS ci ratio: 4.555967e-02	ci left: 4.155831e-01	ci right 4.350604e-01	k: 4253	n:10000
LIAS   10000 perm   2 sec   (5860 perm/sec)   p_kst 4.253000e-01   p_cons 4.102000e-01   p_joint 5.614000e-01

Outputting figure to mutsig2_images.part000000000097/LIAS.4_1163_10000_0.4253_0.4102_0.5614.png
                gene_name: LIAS
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 37 percent done.
LIG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.967221e-02	ci left: 6.261796e-01	ci right 6.451413e-01	k: 6357	n:10000
Cons ci ratio: 5.874346e-02	ci left: 2.989585e-01	ci right 3.171535e-01	k: 3080	n:10000
KS ci ratio: 1.287374e-02	ci left: 8.967235e-01	ci right 9.084408e-01	k: 9027	n:10000
LIG1   10000 perm   2 sec   (5077 perm/sec)   p_kst 9.027000e-01   p_cons 3.080000e-01   p_joint 6.357000e-01

Outputting figure to mutsig2_images.part000000000097/LIG1.4_2868_10000_0.9027_0.308_0.6357.png
                gene_name: LIG1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 39 percent done.
LILRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.657006e-02	ci left: 5.247648e-01	ci right 5.444151e-01	k: 5346	n:10000
Cons ci ratio: 1.856597e-02	ci left: 8.090764e-01	ci right 8.243387e-01	k: 8168	n:10000
KS ci ratio: 6.870133e-02	ci left: 2.370897e-01	ci right 2.540587e-01	k: 2455	n:10000
LILRA1   10000 perm   2 sec   (5744 perm/sec)   p_kst 2.455000e-01   p_cons 8.168000e-01   p_joint 5.346000e-01

Outputting figure to mutsig2_images.part000000000097/LILRA1.4_1506_10000_0.2455_0.8168_0.5346.png
                gene_name: LILRA1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 41 percent done.
LILRA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.536206e-02	ci left: 6.958521e-01	ci right 7.138284e-01	k: 7049	n:10000
Cons ci ratio: 3.267405e-02	ci left: 5.802852e-01	ci right 5.996624e-01	k: 5900	n:10000
KS ci ratio: 2.988391e-02	ci left: 6.228625e-01	ci right 6.418603e-01	k: 6324	n:10000
LILRA4   10000 perm   2 sec   (5636 perm/sec)   p_kst 6.324000e-01   p_cons 5.900000e-01   p_joint 7.049000e-01

Outputting figure to mutsig2_images.part000000000097/LILRA4.4_1532_10000_0.6324_0.59_0.7049.png
                gene_name: LILRA4
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 42 percent done.
LILRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.187238e-02	ci left: 3.539639e-01	ci right 3.729157e-01	k: 3634	n:10000
Cons ci ratio: 2.310239e-02	ci left: 7.335069e-01	ci right 7.507518e-01	k: 7422	n:10000
KS ci ratio: 7.623591e-02	ci left: 2.010665e-01	ci right 2.171033e-01	k: 2090	n:10000
LILRB2   10000 perm   2 sec   (5065 perm/sec)   p_kst 2.090000e-01   p_cons 7.422000e-01   p_joint 3.634000e-01

Outputting figure to mutsig2_images.part000000000097/LILRB2.4_1849_10000_0.209_0.7422_0.3634.png
                gene_name: LILRB2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 44 percent done.
LILRB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.507590e-02	ci left: 7.005927e-01	ci right 7.184851e-01	k: 7096	n:10000
Cons ci ratio: 5.618554e-02	ci left: 3.181047e-01	ci right 3.365960e-01	k: 3273	n:10000
KS ci ratio: 2.669787e-02	ci left: 6.738786e-01	ci right 6.922147e-01	k: 6831	n:10000
LILRB4   10000 perm   3 sec   (3536 perm/sec)   p_kst 6.831000e-01   p_cons 3.273000e-01   p_joint 7.096000e-01

Outputting figure to mutsig2_images.part000000000097/LILRB4.4_1395_10000_0.6831_0.3273_0.7096.png
                gene_name: LILRB4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 46 percent done.
LINGO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.947207e-02	ci left: 7.941537e-01	ci right 8.098700e-01	k: 8021	n:10000
Cons ci ratio: 4.122974e-02	ci left: 4.648713e-01	ci right 4.845434e-01	k: 4747	n:10000
KS ci ratio: 2.951867e-02	ci left: 6.285922e-01	ci right 6.475273e-01	k: 6381	n:10000
LINGO1   10000 perm   3 sec   (3945 perm/sec)   p_kst 6.381000e-01   p_cons 4.747000e-01   p_joint 8.021000e-01

Outputting figure to mutsig2_images.part000000000097/LINGO1.4_1871_10000_0.6381_0.4747_0.8021.png
                gene_name: LINGO1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 47 percent done.
LINGO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.076461e-02	ci left: 2.264216e-01	ci right 2.431331e-01	k: 2347	n:10000
Cons ci ratio: 1.459254e-01	ci left: 6.236946e-02	ci right 7.228440e-02	k: 672	n:10000
KS ci ratio: 2.807057e-02	ci left: 6.516263e-01	ci right 6.702799e-01	k: 6610	n:10000
LINGO4   10000 perm   2 sec   (4634 perm/sec)   p_kst 6.610000e-01   p_cons 6.720000e-02   p_joint 2.347000e-01

Joint ci ratio: 6.092267e-02	ci left: 1.662495e-01	ci right 1.767461e-01	k: 3429	n:20000
Cons ci ratio: 1.044404e-01	ci left: 6.235342e-02	ci right 6.927346e-02	k: 1315	n:20000
KS ci ratio: 2.006488e-02	ci left: 6.495197e-01	ci right 6.627348e-01	k: 13123	n:20000
LINGO4   20000 perm   5 sec   (4074 perm/sec)   p_kst 6.561500e-01   p_cons 6.575000e-02   p_joint 1.714500e-01

Joint ci ratio: 3.088088e-02	ci left: 3.440029e-01	ci right 3.548262e-01	k: 10482	n:30000
Cons ci ratio: 7.830140e-02	ci left: 7.407315e-02	ci right 8.014238e-02	k: 2312	n:30000
KS ci ratio: 1.639341e-02	ci left: 6.504591e-01	ci right 6.612440e-01	k: 19676	n:30000
LINGO4   30000 perm   8 sec   (3973 perm/sec)   p_kst 6.558667e-01   p_cons 7.706667e-02   p_joint 3.494000e-01

Outputting figure to mutsig2_images.part000000000097/LINGO4.4_1786_30000_0.65587_0.077067_0.3494.png
                gene_name: LINGO4
               theta_stop: 0.078 
                    nperm: 30000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 49 percent done.
LIPC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.605704e-02	ci left: 4.103009e-01	ci right 4.297457e-01	k: 4200	n:10000
Cons ci ratio: 5.333872e-02	ci left: 3.412425e-01	ci right 3.600446e-01	k: 3506	n:10000
KS ci ratio: 6.802223e-02	ci left: 2.407462e-01	ci right 2.578001e-01	k: 2492	n:10000
LIPC   10000 perm   2 sec   (5788 perm/sec)   p_kst 2.492000e-01   p_cons 3.506000e-01   p_joint 4.200000e-01

Outputting figure to mutsig2_images.part000000000097/LIPC.4_1536_10000_0.2492_0.3506_0.42.png
                gene_name: LIPC
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 51 percent done.
LIPE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.114346e-02	ci left: 6.033719e-01	ci right 6.225622e-01	k: 6130	n:10000
Cons ci ratio: 3.342919e-02	ci left: 5.691511e-01	ci right 5.886029e-01	k: 5789	n:10000
KS ci ratio: 5.744651e-02	ci left: 3.084797e-01	ci right 3.268266e-01	k: 3176	n:10000
LIPE   10000 perm   2 sec   (5630 perm/sec)   p_kst 3.176000e-01   p_cons 5.789000e-01   p_joint 6.130000e-01

Outputting figure to mutsig2_images.part000000000097/LIPE.4_3271_10000_0.3176_0.5789_0.613.png
                gene_name: LIPE
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 53 percent done.
LIPJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.466975e-02	ci left: 8.706072e-01	ci right 8.835722e-01	k: 8772	n:10000
Cons ci ratio: 2.820846e-02	ci left: 6.494124e-01	ci right 6.680951e-01	k: 6588	n:10000
KS ci ratio: 2.508807e-02	ci left: 7.003909e-01	ci right 7.182870e-01	k: 7094	n:10000
LIPJ   10000 perm   2 sec   (6221 perm/sec)   p_kst 7.094000e-01   p_cons 6.588000e-01   p_joint 8.772000e-01

Outputting figure to mutsig2_images.part000000000097/LIPJ.4_1137_10000_0.7094_0.6588_0.8772.png
                gene_name: LIPJ
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 54 percent done.
LIPN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.373175e-02	ci left: 5.647390e-01	ci right 5.842175e-01	k: 5745	n:10000
Cons ci ratio: 6.035235e-02	ci left: 2.876580e-01	ci right 3.056606e-01	k: 2966	n:10000
KS ci ratio: 3.177704e-02	ci left: 5.937330e-01	ci right 6.130067e-01	k: 6034	n:10000
LIPN   10000 perm   2 sec   (5882 perm/sec)   p_kst 6.034000e-01   p_cons 2.966000e-01   p_joint 5.745000e-01

Outputting figure to mutsig2_images.part000000000097/LIPN.4_1233_10000_0.6034_0.2966_0.5745.png
                gene_name: LIPN
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 56 percent done.
LIPT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.259546e-01	ci left: 8.271234e-02	ci right 9.392883e-02	k: 882	n:10000
Cons ci ratio: 2.463854e-02	ci left: 7.078571e-01	ci right 7.256165e-01	k: 7168	n:10000
KS ci ratio: 2.920119e-01	ci left: 1.511403e-02	ci right 2.037228e-02	k: 176	n:10000
LIPT1   10000 perm   1 sec   (6700 perm/sec)   p_kst 1.760000e-02   p_cons 7.168000e-01   p_joint 8.820000e-02

Joint ci ratio: 9.823020e-02	ci left: 7.011604e-02	ci right 7.740846e-02	k: 1474	n:20000
Cons ci ratio: 1.761783e-02	ci left: 7.059203e-01	ci right 7.185180e-01	k: 14245	n:20000
KS ci ratio: 2.044404e-01	ci left: 1.620275e-02	ci right 1.993924e-02	k: 360	n:20000
LIPT1   20000 perm   3 sec   (5936 perm/sec)   p_kst 1.800000e-02   p_cons 7.122500e-01   p_joint 7.370000e-02

Joint ci ratio: 1.047886e-01	ci left: 4.222667e-02	ci right 4.692870e-02	k: 1336	n:30000
Cons ci ratio: 1.442420e-02	ci left: 7.059676e-01	ci right 7.162581e-01	k: 21334	n:30000
KS ci ratio: 1.637964e-01	ci left: 1.719719e-02	ci right 2.029700e-02	k: 561	n:30000
LIPT1   30000 perm   5 sec   (5639 perm/sec)   p_kst 1.870000e-02   p_cons 7.111333e-01   p_joint 4.453333e-02

Joint ci ratio: 7.501741e-02	ci left: 6.149787e-02	ci right 6.631568e-02	k: 2555	n:40000
Cons ci ratio: 1.250799e-02	ci left: 7.061283e-01	ci right 7.150411e-01	k: 28424	n:40000
KS ci ratio: 1.472871e-01	ci left: 1.611714e-02	ci right 1.870360e-02	k: 695	n:40000
LIPT1   40000 perm   7 sec   (5418 perm/sec)   p_kst 1.737500e-02   p_cons 7.106000e-01   p_joint 6.387500e-02

Joint ci ratio: 9.071609e-02	ci left: 3.436455e-02	ci right 3.764961e-02	k: 1799	n:50000
Cons ci ratio: 1.140546e-02	ci left: 6.985716e-01	ci right 7.066049e-01	k: 35130	n:50000
KS ci ratio: 1.321248e-01	ci left: 1.615587e-02	ci right 1.846066e-02	k: 864	n:50000
LIPT1   50000 perm   10 sec   (5261 perm/sec)   p_kst 1.728000e-02   p_cons 7.026000e-01   p_joint 3.598000e-02

Joint ci ratio: 7.480271e-02	ci left: 4.212715e-02	ci right 4.541716e-02	k: 2625	n:60000
Cons ci ratio: 1.039762e-02	ci left: 6.994930e-01	ci right 7.068207e-01	k: 42190	n:60000
KS ci ratio: 1.210290e-01	ci left: 1.614240e-02	ci right 1.823801e-02	k: 1030	n:60000
LIPT1   60000 perm   12 sec   (5125 perm/sec)   p_kst 1.716667e-02   p_cons 7.031667e-01   p_joint 4.375000e-02

Joint ci ratio: 6.894464e-02	ci left: 4.261890e-02	ci right 4.567618e-02	k: 3089	n:70000
Cons ci ratio: 9.610086e-03	ci left: 7.004738e-01	ci right 7.072522e-01	k: 49271	n:70000
KS ci ratio: 1.124722e-01	ci left: 1.609695e-02	ci right 1.802909e-02	k: 1193	n:70000
LIPT1   70000 perm   14 sec   (5008 perm/sec)   p_kst 1.704286e-02   p_cons 7.038714e-01   p_joint 4.412857e-02

Joint ci ratio: 6.266139e-02	ci left: 4.517423e-02	ci right 4.810876e-02	k: 3730	n:80000
Cons ci ratio: 9.015497e-03	ci left: 6.994816e-01	ci right 7.058287e-01	k: 56213	n:80000
KS ci ratio: 1.051914e-01	ci left: 1.616422e-02	ci right 1.797105e-02	k: 1364	n:80000
LIPT1   80000 perm   16 sec   (4886 perm/sec)   p_kst 1.705000e-02   p_cons 7.026625e-01   p_joint 4.662500e-02

Joint ci ratio: 6.387452e-02	ci left: 3.888221e-02	ci right 4.145864e-02	k: 3614	n:90000
Cons ci ratio: 8.304037e-03	ci left: 7.093413e-01	ci right 7.152673e-01	k: 64108	n:90000
KS ci ratio: 9.965933e-02	ci left: 1.605709e-02	ci right 1.775203e-02	k: 1520	n:90000
LIPT1   90000 perm   19 sec   (4766 perm/sec)   p_kst 1.688889e-02   p_cons 7.123111e-01   p_joint 4.015556e-02

Outputting figure to mutsig2_images.part000000000097/LIPT1.4_1126_90000_0.016889_0.71231_0.040156.png
                gene_name: LIPT1
               theta_stop: 0.100 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.041 

Current progress: 58 percent done.
LMCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.153199e-02	ci left: 5.974476e-01	ci right 6.166900e-01	k: 6071	n:10000
Cons ci ratio: 1.909731e-02	ci left: 8.003440e-01	ci right 8.158761e-01	k: 8082	n:10000
KS ci ratio: 5.607094e-02	ci left: 3.189980e-01	ci right 3.375022e-01	k: 3282	n:10000
LMCD1   10000 perm   2 sec   (5682 perm/sec)   p_kst 3.282000e-01   p_cons 8.082000e-01   p_joint 6.071000e-01

Outputting figure to mutsig2_images.part000000000097/LMCD1.4_1122_10000_0.3282_0.8082_0.6071.png
                gene_name: LMCD1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 59 percent done.
LMNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
Cons ci ratio: 3.978354e-03	ci left: 9.877409e-01	ci right 9.917661e-01	k: 9899	n:10000
KS ci ratio: 1.272230e-01	ci left: 8.115862e-02	ci right 9.228352e-02	k: 866	n:10000
LMNB1   10000 perm   2 sec   (5588 perm/sec)   p_kst 8.660000e-02   p_cons 9.899000e-01   p_joint 2.275000e-01

Joint ci ratio: 4.944033e-02	ci left: 2.332019e-01	ci right 2.450740e-01	k: 4782	n:20000
Cons ci ratio: 2.882335e-03	ci left: 9.878290e-01	ci right 9.907261e-01	k: 19787	n:20000
KS ci ratio: 8.789646e-02	ci left: 8.646061e-02	ci right 9.445892e-02	k: 1808	n:20000
LMNB1   20000 perm   4 sec   (4621 perm/sec)   p_kst 9.040000e-02   p_cons 9.893500e-01   p_joint 2.391000e-01

Outputting figure to mutsig2_images.part000000000097/LMNB1.4_1805_20000_0.0904_0.98935_0.2391.png
                gene_name: LMNB1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 61 percent done.
LMX1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.118018e-02	ci left: 4.654705e-01	ci right 4.851439e-01	k: 4753	n:10000
Cons ci ratio: 4.105657e-02	ci left: 4.669687e-01	ci right 4.866448e-01	k: 4768	n:10000
KS ci ratio: 4.532749e-02	ci left: 4.180751e-01	ci right 4.375670e-01	k: 4278	n:10000
LMX1A   10000 perm   2 sec   (6020 perm/sec)   p_kst 4.278000e-01   p_cons 4.768000e-01   p_joint 4.753000e-01

Outputting figure to mutsig2_images.part000000000097/LMX1A.4_1181_10000_0.4278_0.4768_0.4753.png
                gene_name: LMX1A
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 63 percent done.
LHX8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.937791e-02	ci left: 3.769402e-01	ci right 3.961259e-01	k: 3865	n:10000
Cons ci ratio: 1.284434e-01	ci left: 7.970251e-02	ci right 9.074052e-02	k: 851	n:10000
KS ci ratio: 1.499456e-02	ci left: 8.657021e-01	ci right 8.788802e-01	k: 8724	n:10000
LHX8   10000 perm   2 sec   (6425 perm/sec)   p_kst 8.724000e-01   p_cons 8.510000e-02   p_joint 3.865000e-01

Joint ci ratio: 5.432667e-02	ci left: 2.009079e-01	ci right 2.121775e-01	k: 4130	n:20000
Cons ci ratio: 9.004739e-02	ci left: 8.263952e-02	ci right 9.048117e-02	k: 1730	n:20000
KS ci ratio: 1.057320e-02	ci left: 8.683060e-01	ci right 8.775852e-01	k: 17460	n:20000
LHX8   20000 perm   3 sec   (5722 perm/sec)   p_kst 8.730000e-01   p_cons 8.650000e-02   p_joint 2.065000e-01

Outputting figure to mutsig2_images.part000000000097/LHX8.3_1107_20000_0.873_0.0865_0.2065.png
                gene_name: LHX8
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 64 percent done.
LILRA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.616784e-02	ci left: 5.302713e-01	ci right 5.499054e-01	k: 5401	n:10000
Cons ci ratio: 1.552184e-02	ci left: 8.576357e-01	ci right 8.711513e-01	k: 8645	n:10000
KS ci ratio: 5.149343e-02	ci left: 3.573442e-01	ci right 3.763334e-01	k: 3668	n:10000
LILRA5   10000 perm   2 sec   (6229 perm/sec)   p_kst 3.668000e-01   p_cons 8.645000e-01   p_joint 5.401000e-01

Outputting figure to mutsig2_images.part000000000097/LILRA5.3_1014_10000_0.3668_0.8645_0.5401.png
                gene_name: LILRA5
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 66 percent done.
LIPF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.587043e-02	ci left: 5.343769e-01	ci right 5.539974e-01	k: 5442	n:10000
Cons ci ratio: 4.215023e-02	ci left: 4.538878e-01	ci right 4.735333e-01	k: 4637	n:10000
KS ci ratio: 6.589183e-02	ci left: 2.527095e-01	ci right 2.700297e-01	k: 2613	n:10000
LIPF   10000 perm   2 sec   (6124 perm/sec)   p_kst 2.613000e-01   p_cons 4.637000e-01   p_joint 5.442000e-01

Outputting figure to mutsig2_images.part000000000097/LIPF.3_1233_10000_0.2613_0.4637_0.5442.png
                gene_name: LIPF
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 68 percent done.
LIPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.794440e-02	ci left: 5.063518e-01	ci right 5.260388e-01	k: 5162	n:10000
Cons ci ratio: 1.166602e-02	ci left: 9.131707e-01	ci right 9.239840e-01	k: 9187	n:10000
KS ci ratio: 8.452535e-02	ci left: 1.694660e-01	ci right 1.845227e-01	k: 1769	n:10000
LIPH   10000 perm   2 sec   (6040 perm/sec)   p_kst 1.769000e-01   p_cons 9.187000e-01   p_joint 5.162000e-01

Outputting figure to mutsig2_images.part000000000097/LIPH.3_1396_10000_0.1769_0.9187_0.5162.png
                gene_name: LIPH
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 69 percent done.
LIX1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.168182e-01	ci left: 9.525826e-02	ci right 1.071752e-01	k: 1011	n:10000
Cons ci ratio: 4.205714e-02	ci left: 4.549859e-01	ci right 4.746346e-01	k: 4648	n:10000
KS ci ratio: 1.559827e-01	ci left: 5.474973e-02	ci right 6.410897e-02	k: 593	n:10000
LIX1L   10000 perm   2 sec   (6457 perm/sec)   p_kst 5.930000e-02   p_cons 4.648000e-01   p_joint 1.011000e-01

Joint ci ratio: 8.560077e-02	ci left: 9.082330e-02	ci right 9.899491e-02	k: 1897	n:20000
Cons ci ratio: 2.984615e-02	ci left: 4.561202e-01	ci right 4.699905e-01	k: 9261	n:20000
KS ci ratio: 1.053865e-01	ci left: 6.128043e-02	ci right 6.814678e-02	k: 1293	n:20000
LIX1L   20000 perm   4 sec   (5710 perm/sec)   p_kst 6.465000e-02   p_cons 4.630500e-01   p_joint 9.485000e-02

Joint ci ratio: 8.157673e-02	ci left: 6.854390e-02	ci right 7.440608e-02	k: 2143	n:30000
Cons ci ratio: 2.425835e-02	ci left: 4.596759e-01	ci right 4.709974e-01	k: 13960	n:30000
KS ci ratio: 8.626237e-02	ci left: 6.161532e-02	ci right 6.720274e-02	k: 1931	n:30000
LIX1L   30000 perm   6 sec   (5387 perm/sec)   p_kst 6.436667e-02   p_cons 4.653333e-01   p_joint 7.143333e-02

Outputting figure to mutsig2_images.part000000000097/LIX1L.3_1038_30000_0.064367_0.46533_0.071433.png
                gene_name: LIX1L
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.074 

Current progress: 71 percent done.
LMLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.884357e-03	ci left: 9.572282e-01	ci right 9.649002e-01	k: 9612	n:10000
Cons ci ratio: 2.520369e-02	ci left: 6.984744e-01	ci right 7.164046e-01	k: 7075	n:10000
KS ci ratio: 3.651866e-02	ci left: 5.254655e-01	ci right 5.451139e-01	k: 5353	n:10000
LMLN   10000 perm   2 sec   (6028 perm/sec)   p_kst 5.353000e-01   p_cons 7.075000e-01   p_joint 9.612000e-01

Outputting figure to mutsig2_images.part000000000097/LMLN.3_2147_10000_0.5353_0.7075_0.9612.png
                gene_name: LMLN
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 73 percent done.
LMOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.952468e-02	ci left: 4.859529e-01	ci right 5.056495e-01	k: 4958	n:10000
Cons ci ratio: 8.698407e-02	ci left: 1.614075e-01	ci right 1.761860e-01	k: 1687	n:10000
KS ci ratio: 2.458394e-02	ci left: 7.087653e-01	ci right 7.265077e-01	k: 7177	n:10000
LMOD1   10000 perm   2 sec   (5997 perm/sec)   p_kst 7.177000e-01   p_cons 1.687000e-01   p_joint 4.958000e-01

Outputting figure to mutsig2_images.part000000000097/LMOD1.3_1815_10000_0.7177_0.1687_0.4958.png
                gene_name: LMOD1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 75 percent done.
LMOD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.911097e-02	ci left: 6.350273e-01	ci right 6.538884e-01	k: 6445	n:10000
Cons ci ratio: 1.117840e-01	ci left: 1.033465e-01	ci right 1.156820e-01	k: 1094	n:10000
KS ci ratio: 3.785336e-02	ci left: 5.075522e-01	ci right 5.272376e-01	k: 5174	n:10000
LMOD2   10000 perm   2 sec   (6054 perm/sec)   p_kst 5.174000e-01   p_cons 1.094000e-01   p_joint 6.445000e-01

Joint ci ratio: 2.794749e-02	ci left: 4.888967e-01	ci right 5.028045e-01	k: 9917	n:20000
Cons ci ratio: 8.007495e-02	ci left: 1.026992e-01	ci right 1.113154e-01	k: 2139	n:20000
KS ci ratio: 2.679777e-02	ci left: 5.098974e-01	ci right 5.237977e-01	k: 10337	n:20000
LMOD2   20000 perm   4 sec   (5420 perm/sec)   p_kst 5.168500e-01   p_cons 1.069500e-01   p_joint 4.958500e-01

Outputting figure to mutsig2_images.part000000000097/LMOD2.3_1656_20000_0.51685_0.10695_0.49585.png
                gene_name: LMOD2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 76 percent done.
LMOD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.808054e-02	ci left: 8.170019e-01	ci right 8.320086e-01	k: 8246	n:10000
Cons ci ratio: 1.183862e-01	ci left: 9.292171e-02	ci right 1.047132e-01	k: 987	n:10000
KS ci ratio: 4.375241e-02	ci left: 4.354264e-01	ci right 4.550056e-01	k: 4452	n:10000
LMOD3   10000 perm   2 sec   (5892 perm/sec)   p_kst 4.452000e-01   p_cons 9.870000e-02   p_joint 8.246000e-01

Joint ci ratio: 2.895525e-02	ci left: 4.712057e-01	ci right 4.851007e-01	k: 9563	n:20000
Cons ci ratio: 8.385469e-02	ci left: 9.435467e-02	ci right 1.026625e-01	k: 1969	n:20000
KS ci ratio: 3.101555e-02	ci left: 4.370976e-01	ci right 4.509186e-01	k: 8880	n:20000
LMOD3   20000 perm   4 sec   (5253 perm/sec)   p_kst 4.440000e-01   p_cons 9.845000e-02   p_joint 4.781500e-01

Outputting figure to mutsig2_images.part000000000097/LMOD3.3_1695_20000_0.444_0.09845_0.47815.png
                gene_name: LMOD3
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 78 percent done.
LMX1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.276977e-02	ci left: 3.461116e-01	ci right 3.649727e-01	k: 3555	n:10000
Cons ci ratio: 2.521293e-01	ci left: 2.062036e-02	ci right 2.666153e-02	k: 235	n:10000
KS ci ratio: 2.298773e-02	ci left: 7.354271e-01	ci right 7.526306e-01	k: 7441	n:10000
LMX1B   10000 perm   2 sec   (6287 perm/sec)   p_kst 7.441000e-01   p_cons 2.350000e-02   p_joint 3.555000e-01

Joint ci ratio: 3.391314e-02	ci left: 3.936491e-01	ci right 4.072799e-01	k: 8009	n:20000
Cons ci ratio: 1.788696e-01	ci left: 2.134943e-02	ci right 2.559067e-02	k: 468	n:20000
KS ci ratio: 1.637019e-02	ci left: 7.352718e-01	ci right 7.474580e-01	k: 14828	n:20000
LMX1B   20000 perm   4 sec   (5584 perm/sec)   p_kst 7.414000e-01   p_cons 2.340000e-02   p_joint 4.004500e-01

Joint ci ratio: 2.520889e-02	ci left: 4.406303e-01	ci right 4.519135e-01	k: 13388	n:30000
Cons ci ratio: 1.466356e-01	ci left: 2.155829e-02	ci right 2.500155e-02	k: 697	n:30000
KS ci ratio: 1.342087e-02	ci left: 7.348290e-01	ci right 7.447911e-01	k: 22195	n:30000
LMX1B   30000 perm   6 sec   (5308 perm/sec)   p_kst 7.398333e-01   p_cons 2.323333e-02   p_joint 4.462667e-01

Joint ci ratio: 2.180279e-02	ci left: 4.420443e-01	ci right 4.518134e-01	k: 17877	n:40000
Cons ci ratio: 1.280989e-01	ci left: 2.140788e-02	ci right 2.436195e-02	k: 914	n:40000
KS ci ratio: 1.159969e-02	ci left: 7.362748e-01	ci right 7.448902e-01	k: 29624	n:40000
LMX1B   40000 perm   8 sec   (5136 perm/sec)   p_kst 7.406000e-01   p_cons 2.285000e-02   p_joint 4.469250e-01

Joint ci ratio: 1.902180e-02	ci left: 4.548844e-01	ci right 4.636403e-01	k: 22963	n:50000
Cons ci ratio: 1.143072e-01	ci left: 2.166493e-02	ci right 2.431085e-02	k: 1148	n:50000
KS ci ratio: 1.036753e-02	ci left: 7.370156e-01	ci right 7.447164e-01	k: 37044	n:50000
LMX1B   50000 perm   10 sec   (4990 perm/sec)   p_kst 7.408800e-01   p_cons 2.296000e-02   p_joint 4.592600e-01

Joint ci ratio: 1.696643e-02	ci left: 4.667992e-01	ci right 4.748036e-01	k: 28248	n:60000
Cons ci ratio: 1.043789e-01	ci left: 2.176660e-02	ci right 2.417984e-02	k: 1377	n:60000
KS ci ratio: 9.446482e-03	ci left: 7.380773e-01	ci right 7.450993e-01	k: 44496	n:60000
LMX1B   60000 perm   12 sec   (4875 perm/sec)   p_kst 7.416000e-01   p_cons 2.295000e-02   p_joint 4.708000e-01

Joint ci ratio: 1.661075e-02	ci left: 4.393868e-01	ci right 4.467608e-01	k: 31015	n:70000
Cons ci ratio: 9.712164e-02	ci left: 2.163719e-02	ci right 2.385976e-02	k: 1591	n:70000
KS ci ratio: 8.789107e-03	ci left: 7.364324e-01	ci right 7.429478e-01	k: 51779	n:70000
LMX1B   70000 perm   15 sec   (4752 perm/sec)   p_kst 7.397000e-01   p_cons 2.272857e-02   p_joint 4.430714e-01

Outputting figure to mutsig2_images.part000000000097/LMX1B.3_1274_70000_0.7397_0.022729_0.44307.png
                gene_name: LMX1B
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 80 percent done.
LILRA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.960179e-02	ci left: 6.272853e-01	ci right 6.462349e-01	k: 6368	n:10000
Cons ci ratio: 5.513094e-02	ci left: 3.264433e-01	ci right 3.450525e-01	k: 3357	n:10000
KS ci ratio: 7.914066e-02	ci left: 1.891452e-01	ci right 2.048317e-01	k: 1969	n:10000
LILRA2   10000 perm   2 sec   (6439 perm/sec)   p_kst 1.969000e-01   p_cons 3.357000e-01   p_joint 6.368000e-01

Outputting figure to mutsig2_images.part000000000097/LILRA2.2_1484_10000_0.1969_0.3357_0.6368.png
                gene_name: LILRA2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 81 percent done.
LILRA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.006938e-01	ci left: 1.249344e-01	ci right 1.382810e-01	k: 1315	n:10000
Cons ci ratio: 9.419989e-02	ci left: 1.406033e-01	ci right 1.546027e-01	k: 1475	n:10000
KS ci ratio: 8.567447e-02	ci left: 1.656325e-01	ci right 1.805584e-01	k: 1730	n:10000
LILRA3   10000 perm   2 sec   (5773 perm/sec)   p_kst 1.730000e-01   p_cons 1.475000e-01   p_joint 1.315000e-01

Joint ci ratio: 6.328675e-02	ci left: 1.558322e-01	ci right 1.660666e-01	k: 3218	n:20000
Cons ci ratio: 6.770383e-02	ci left: 1.386683e-01	ci right 1.484355e-01	k: 2870	n:20000
KS ci ratio: 6.041313e-02	ci left: 1.686204e-01	ci right 1.791746e-01	k: 3477	n:20000
LILRA3   20000 perm   4 sec   (5410 perm/sec)   p_kst 1.738500e-01   p_cons 1.435000e-01   p_joint 1.609000e-01

Outputting figure to mutsig2_images.part000000000097/LILRA3.2_1348_20000_0.17385_0.1435_0.1609.png
                gene_name: LILRA3
               theta_stop: 0.068 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 83 percent done.
LILRB3
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 85 percent done.
LIMS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.521033e-02	ci left: 5.435919e-01	ci right 5.631770e-01	k: 5534	n:10000
KS ci ratio: 6.184581e-02	ci left: 2.776517e-01	ci right 2.954728e-01	k: 2865	n:10000
LIMS2   10000 perm   2 sec   (6638 perm/sec)   p_kst 2.865000e-01   p_cons 5.534000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LIMS2.2_1223_10000_0.2865_0.5534_1.png
                gene_name: LIMS2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
LIN7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.522827e-02	ci left: 1.671068e-01	ci right 1.820833e-01	k: 1745	n:10000
KS ci ratio: 3.444763e-02	ci left: 5.544138e-01	ci right 5.739488e-01	k: 5642	n:10000
LIN7A   10000 perm   1 sec   (6886 perm/sec)   p_kst 5.642000e-01   p_cons 1.745000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LIN7A.2_722_10000_0.5642_0.1745_1.png
                gene_name: LIN7A
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
LIPG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.088549e-02	ci left: 7.706358e-01	ci right 7.870015e-01	k: 7789	n:10000
Cons ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
KS ci ratio: 6.971741e-02	ci left: 2.317548e-01	ci right 2.485968e-01	k: 2401	n:10000
LIPG   10000 perm   2 sec   (6403 perm/sec)   p_kst 2.401000e-01   p_cons 1.890000e-01   p_joint 7.789000e-01

Outputting figure to mutsig2_images.part000000000097/LIPG.2_1543_10000_0.2401_0.189_0.7789.png
                gene_name: LIPG
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 90 percent done.
LLGL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.298328e-02	ci left: 8.951842e-01	ci right 9.069810e-01	k: 9012	n:10000
Cons ci ratio: 1.700177e-02	ci left: 8.343964e-01	ci right 8.488040e-01	k: 8417	n:10000
KS ci ratio: 2.802049e-02	ci left: 6.524314e-01	ci right 6.710743e-01	k: 6618	n:10000
LLGL2   10000 perm   2 sec   (5634 perm/sec)   p_kst 6.618000e-01   p_cons 8.417000e-01   p_joint 9.012000e-01

Outputting figure to mutsig2_images.part000000000097/LLGL2.2_3226_10000_0.6618_0.8417_0.9012.png
                gene_name: LLGL2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 92 percent done.
LMAN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.745679e-01	ci left: 4.379660e-02	ci right 5.226918e-02	k: 479	n:10000
Cons ci ratio: 2.625735e-01	ci left: 1.893425e-02	ci right 2.474894e-02	k: 217	n:10000
KS ci ratio: 3.581263e-02	ci left: 5.351780e-01	ci right 5.547957e-01	k: 5450	n:10000
LMAN1   10000 perm   2 sec   (6352 perm/sec)   p_kst 5.450000e-01   p_cons 2.170000e-02   p_joint 4.790000e-02

Joint ci ratio: 1.839540e-01	ci left: 2.015504e-02	ci right 2.428549e-02	k: 443	n:20000
Cons ci ratio: 1.839540e-01	ci left: 2.015504e-02	ci right 2.428549e-02	k: 443	n:20000
KS ci ratio: 2.528930e-02	ci left: 5.387683e-01	ci right 5.526184e-01	k: 10914	n:20000
LMAN1   20000 perm   4 sec   (5640 perm/sec)   p_kst 5.457000e-01   p_cons 2.215000e-02   p_joint 2.215000e-02

Joint ci ratio: 1.626208e-01	ci left: 1.745315e-02	ci right 2.057432e-02	k: 569	n:30000
Cons ci ratio: 1.519584e-01	ci left: 2.004894e-02	ci right 2.337792e-02	k: 650	n:30000
KS ci ratio: 2.077432e-02	ci left: 5.370422e-01	ci right 5.483496e-01	k: 16281	n:30000
LMAN1   30000 perm   6 sec   (5349 perm/sec)   p_kst 5.427000e-01   p_cons 2.166667e-02   p_joint 1.896667e-02

Joint ci ratio: 1.197848e-01	ci left: 2.451102e-02	ci right 2.765829e-02	k: 1042	n:40000
Cons ci ratio: 1.311378e-01	ci left: 2.041542e-02	ci right 2.330457e-02	k: 873	n:40000
KS ci ratio: 1.790989e-02	ci left: 5.400543e-01	ci right 5.498392e-01	k: 21798	n:40000
LMAN1   40000 perm   8 sec   (5171 perm/sec)   p_kst 5.449500e-01   p_cons 2.182500e-02   p_joint 2.605000e-02

Joint ci ratio: 1.134511e-01	ci left: 2.199546e-02	ci right 2.466028e-02	k: 1165	n:50000
Cons ci ratio: 1.174309e-01	ci left: 2.051841e-02	ci right 2.309753e-02	k: 1089	n:50000
KS ci ratio: 1.597758e-02	ci left: 5.418636e-01	ci right 5.506110e-01	k: 27312	n:50000
LMAN1   50000 perm   10 sec   (5022 perm/sec)   p_kst 5.462400e-01   p_cons 2.178000e-02   p_joint 2.330000e-02

Joint ci ratio: 1.038403e-01	ci left: 2.199399e-02	ci right 2.441910e-02	k: 1391	n:60000
Cons ci ratio: 1.076208e-01	ci left: 2.046787e-02	ci right 2.281205e-02	k: 1297	n:60000
KS ci ratio: 1.451867e-02	ci left: 5.445242e-01	ci right 5.525045e-01	k: 32911	n:60000
LMAN1   60000 perm   12 sec   (4901 perm/sec)   p_kst 5.485167e-01   p_cons 2.161667e-02   p_joint 2.318333e-02

Joint ci ratio: 9.535893e-02	ci left: 2.244625e-02	ci right 2.470776e-02	k: 1649	n:70000
Cons ci ratio: 9.875249e-02	ci left: 2.092608e-02	ci right 2.311379e-02	k: 1540	n:70000
KS ci ratio: 1.343132e-02	ci left: 5.452047e-01	ci right 5.525913e-01	k: 38423	n:70000
LMAN1   70000 perm   15 sec   (4784 perm/sec)   p_kst 5.489000e-01   p_cons 2.200000e-02   p_joint 2.355714e-02

Outputting figure to mutsig2_images.part000000000097/LMAN1.2_1585_70000_0.5489_0.022_0.023557.png
                gene_name: LMAN1
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.025 

Current progress: 93 percent done.
LMAN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.113385e-02	ci left: 7.664836e-01	ci right 7.829561e-01	k: 7748	n:10000
Cons ci ratio: 1.798676e-02	ci left: 8.185266e-01	ci right 8.334830e-01	k: 8261	n:10000
KS ci ratio: 5.218770e-02	ci left: 3.511805e-01	ci right 3.701008e-01	k: 3606	n:10000
LMAN2   10000 perm   2 sec   (6574 perm/sec)   p_kst 3.606000e-01   p_cons 8.261000e-01   p_joint 7.748000e-01

Outputting figure to mutsig2_images.part000000000097/LMAN2.2_1103_10000_0.3606_0.8261_0.7748.png
                gene_name: LMAN2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 95 percent done.
LMBR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.723077e-02	ci left: 8.307321e-01	ci right 8.452705e-01	k: 8381	n:10000
KS ci ratio: 1.540909e-02	ci left: 8.593708e-01	ci right 8.728151e-01	k: 8662	n:10000
LMBR1   10000 perm   2 sec   (6390 perm/sec)   p_kst 8.662000e-01   p_cons 8.381000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000097/LMBR1.2_1541_10000_0.8662_0.8381_1.png
                gene_name: LMBR1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
LMF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.486675e-02	ci left: 2.587439e-01	ci right 2.761918e-01	k: 2674	n:10000
Cons ci ratio: 8.537640e-02	ci left: 1.666153e-01	ci right 1.815750e-01	k: 1740	n:10000
KS ci ratio: 2.454149e-02	ci left: 7.094718e-01	ci right 7.272009e-01	k: 7184	n:10000
LMF1   10000 perm   2 sec   (6499 perm/sec)   p_kst 7.184000e-01   p_cons 1.740000e-01   p_joint 2.674000e-01

Outputting figure to mutsig2_images.part000000000097/LMF1.2_1748_10000_0.7184_0.174_0.2674.png
                gene_name: LMF1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 98 percent done.
LNP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.354428e-02	ci left: 8.871865e-01	ci right 8.993833e-01	k: 8934	n:10000
Cons ci ratio: 8.703178e-03	ci left: 9.487722e-01	ci right 9.571614e-01	k: 9531	n:10000
KS ci ratio: 5.562896e-02	ci left: 3.224721e-01	ci right 3.410260e-01	k: 3317	n:10000
LNP1   10000 perm   1 sec   (7153 perm/sec)   p_kst 3.317000e-01   p_cons 9.531000e-01   p_joint 8.934000e-01

Outputting figure to mutsig2_images.part000000000097/LNP1.2_549_10000_0.3317_0.9531_0.8934.png
                gene_name: LNP1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000097
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 97 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1557>
Subject: Job 9894001: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1557>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000098> was used as the working directory.
Started at Sat Oct  6 00:17:11 2012
Results reported at Sat Oct  6 01:06:17 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000098.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000098.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 98  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000098.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3306.67 sec.
    Max Memory :      3576 MB
    Max Swap   :      5941 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
98
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 98
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 98: processing genes 8746 - 8835
Calculating significance of each gene.
Using projection method.
8746	LOC100302652	1
8747	LOC150786	1
8748	LOC153328	1
8749	LOC200726	4.532436e-01
8750	LOC285033	2.936245e-01
8751	LOC286238	1.079646e-01
8752	LOC401052	1
8753	LOC55908	1
8754	LOC642587	5.828514e-02
8755	LOC646498	1
8756	LOC649330	1
8757	LOC728819	2.143555e-01
8758	LOC729991-MEF2B	6.808323e-01
8759	LOC81691	3.112689e-01
8760	LOH12CR1	6.013956e-01
8761	LONP1	8.623767e-01
8762	LONP2	3.404763e-01
8763	LONRF1	2.058796e-01
8764	LONRF2	5.778404e-02
8765	LONRF3	6.001799e-01
8766	LOX	1
8767	LOXL1	1
8768	LOXL2	2.856337e-02
8769	LOXL3	6.422906e-01
8770	LOXL4	8.725574e-01
8771	LPA	1.676719e-01
8772	LPAR1	2.303919e-01
8773	LPAR2	7.962676e-01
8774	LPAR3	3.854597e-02
8775	LPAR4	3.077219e-01
8776	LPAR5	6.814448e-01
8777	LPAR6	5.228612e-01
8778	LPCAT1	4.526347e-01
8779	LPCAT2	6.635517e-01
8780	LPCAT3	4.486756e-01
8781	LPCAT4	5.958139e-01
8782	LPGAT1	1
8783	LPHN1	9.819578e-01
8784	LPHN2	2.784302e-02
8785	LPHN3	5.985159e-03
8786	LPIN1	1.918891e-01
8787	LPIN2	5.712600e-01
8788	LPIN3	4.771574e-01
8789	LPL	4.902960e-02
8790	LPO	7.309497e-01
8791	LPP	4.080148e-01
8792	LPPR1	1
8793	LPPR2	1
8794	LPPR3	8.382984e-01
8795	LPPR4	2.395869e-05
8796	LPPR5	9.548094e-02
8797	LPXN	4.141757e-01
8798	LRAT	2.492867e-01
8799	LRBA	8.591874e-01
8800	LRCH1	6.523080e-01
8801	LRCH2	5.877781e-01
8802	LRCH3	1.349966e-01
8803	LRCH4	8.470188e-01
8804	LRDD	1
8805	LRFN1	1
8806	LRFN2	7.128220e-02
8807	LRFN3	9.502766e-01
8808	LRFN4	1
8809	LRFN5	1.867611e-02
8810	LRG1	8.711930e-01
8811	LRGUK	1.233192e-03
In gene LRIG1 the following bins exceed PROBCAP:
    COAD-AA-3562	categ 6	N = 3136    n = 1	mu =   1.38e-07
8812	LRIG1	5.061236e-01
8813	LRIG2	9.258399e-01
8814	LRIG3	7.528181e-01
8815	LRIT1	4.573067e-01
8816	LRIT2	5.615525e-01
8817	LRIT3	7.518412e-01
8818	LRMP	1.025829e-01
8819	LRP1	9.996251e-01
8820	LRP10	7.822154e-01
8821	LRP11	7.365084e-01
8822	LRP12	2.765839e-02
In gene LRP1B the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 14164   n = 1	mu =   4.60e-07
    COAD-AA-3684	categ 7	N = 14164   n = 1	mu =   3.29e-08
8823	LRP1B	5.953842e-10
8824	LRP2	8.697786e-05
8825	LRP2BP	1.684085e-01
8826	LRP3	1
8827	LRP4	6.392000e-01
8828	LRP5	9.588139e-01
8829	LRP5L	7.074426e-01
8830	LRP6	2.232693e-02
8831	LRP8	3.652156e-01
8832	LRPAP1	8.045145e-01
8833	LRPPRC	9.097518e-01
8834	LRRC1	5.247986e-01
8835	LRRC10	2.903669e-01
Done

Running MutSig 2:
Scatter job 98: processing genes 8746 - 8835
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LRP1B
Processing conservation and coverage...
70% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.303319e-02	ci left: 5.749683e-01	ci right 5.943823e-01	k: 5847	n:10000
Cons ci ratio: 2.159954e-02	ci left: 7.586885e-01	ci right 7.753556e-01	k: 7671	n:10000
KS ci ratio: 4.371700e-02	ci left: 4.358254e-01	ci right 4.554063e-01	k: 4456	n:10000
LRP1B   10000 perm   7 sec   (1404 perm/sec)   p_kst 4.456000e-01   p_cons 7.671000e-01   p_joint 5.847000e-01

Outputting figure to mutsig2_images.part000000000098/LRP1B.75_14164_10000_0.4456_0.7671_0.5847.png
                gene_name: LRP1B
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 2 percent done.
LRP2
Processing conservation and coverage...
70% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.457014e-02	ci left: 2.605249e-01	ci right 2.780097e-01	k: 2692	n:10000
Cons ci ratio: 1.106525e-01	ci left: 1.052972e-01	ci right 1.177301e-01	k: 1114	n:10000
KS ci ratio: 4.091696e-02	ci left: 4.686667e-01	ci right 4.883458e-01	k: 4785	n:10000
LRP2   10000 perm   6 sec   (1649 perm/sec)   p_kst 4.785000e-01   p_cons 1.114000e-01   p_joint 2.692000e-01

Joint ci ratio: 5.197228e-02	ci left: 2.156617e-01	ci right 2.272194e-01	k: 4428	n:20000
Cons ci ratio: 7.748406e-02	ci left: 1.090370e-01	ci right 1.178757e-01	k: 2268	n:20000
KS ci ratio: 3.039199e-02	ci left: 4.471319e-01	ci right 4.609815e-01	k: 9081	n:20000
LRP2   20000 perm   12 sec   (1605 perm/sec)   p_kst 4.540500e-01   p_cons 1.134000e-01   p_joint 2.214000e-01

Outputting figure to mutsig2_images.part000000000098/LRP2.52_14284_20000_0.45405_0.1134_0.2214.png
                gene_name: LRP2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 3 percent done.
LPHN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.564171e-02	ci left: 2.036295e-01	ci right 2.197388e-01	k: 2116	n:10000
Cons ci ratio: 1.544893e-02	ci left: 8.587584e-01	ci right 8.722279e-01	k: 8656	n:10000
KS ci ratio: 1.130045e-01	ci left: 1.012990e-01	ci right 1.135307e-01	k: 1073	n:10000
LPHN3   10000 perm   3 sec   (3828 perm/sec)   p_kst 1.073000e-01   p_cons 8.656000e-01   p_joint 2.116000e-01

Joint ci ratio: 5.085997e-02	ci left: 2.231418e-01	ci right 2.348371e-01	k: 4579	n:20000
Cons ci ratio: 1.093957e-02	ci left: 8.604396e-01	ci right 8.699539e-01	k: 17305	n:20000
KS ci ratio: 7.922764e-02	ci left: 1.047130e-01	ci right 1.134010e-01	k: 2180	n:20000
LPHN3   20000 perm   6 sec   (3483 perm/sec)   p_kst 1.090000e-01   p_cons 8.652500e-01   p_joint 2.289500e-01

Outputting figure to mutsig2_images.part000000000098/LPHN3.17_4502_20000_0.109_0.86525_0.22895.png
                gene_name: LPHN3
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 5 percent done.
LRP1
Processing conservation and coverage...
71% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.224432e-02	ci left: 3.506835e-01	ci right 3.695981e-01	k: 3601	n:10000
Cons ci ratio: 4.543874e-02	ci left: 4.168789e-01	ci right 4.363639e-01	k: 4266	n:10000
KS ci ratio: 5.970793e-02	ci left: 2.921179e-01	ci right 3.101981e-01	k: 3011	n:10000
LRP1   10000 perm   5 sec   (2152 perm/sec)   p_kst 3.011000e-01   p_cons 4.266000e-01   p_joint 3.601000e-01

Outputting figure to mutsig2_images.part000000000098/LRP1.17_13991_10000_0.3011_0.4266_0.3601.png
                gene_name: LRP1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 6 percent done.
LRP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.443915e-02	ci left: 2.613165e-01	ci right 2.788176e-01	k: 2700	n:10000
Cons ci ratio: 4.016222e-02	ci left: 4.779579e-01	ci right 4.976493e-01	k: 4878	n:10000
KS ci ratio: 9.707249e-02	ci left: 1.333527e-01	ci right 1.470577e-01	k: 1401	n:10000
LRP6   10000 perm   3 sec   (3460 perm/sec)   p_kst 1.401000e-01   p_cons 4.878000e-01   p_joint 2.700000e-01

Outputting figure to mutsig2_images.part000000000098/LRP6.17_4934_10000_0.1401_0.4878_0.27.png
                gene_name: LRP6
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 8 percent done.
LRBA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.902580e-02	ci left: 3.803239e-01	ci right 3.995402e-01	k: 3899	n:10000
Cons ci ratio: 2.798295e-02	ci left: 6.530352e-01	ci right 6.716701e-01	k: 6624	n:10000
KS ci ratio: 6.825929e-02	ci left: 2.394614e-01	ci right 2.564857e-01	k: 2479	n:10000
LRBA   10000 perm   4 sec   (2797 perm/sec)   p_kst 2.479000e-01   p_cons 6.624000e-01   p_joint 3.899000e-01

Outputting figure to mutsig2_images.part000000000098/LRBA.15_8820_10000_0.2479_0.6624_0.3899.png
                gene_name: LRBA
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 10 percent done.
LRP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.833402e-02	ci left: 6.473999e-01	ci right 6.661087e-01	k: 6568	n:10000
Cons ci ratio: 3.981027e-02	ci left: 4.823548e-01	ci right 5.020497e-01	k: 4922	n:10000
KS ci ratio: 3.108443e-02	ci left: 6.042758e-01	ci right 6.234578e-01	k: 6139	n:10000
LRP4   10000 perm   3 sec   (3421 perm/sec)   p_kst 6.139000e-01   p_cons 4.922000e-01   p_joint 6.568000e-01

Outputting figure to mutsig2_images.part000000000098/LRP4.14_5870_10000_0.6139_0.4922_0.6568.png
                gene_name: LRP4
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 11 percent done.
LPHN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.515339e-02	ci left: 5.443933e-01	ci right 5.639751e-01	k: 5542	n:10000
Cons ci ratio: 5.557882e-02	ci left: 3.228692e-01	ci right 3.414287e-01	k: 3321	n:10000
KS ci ratio: 2.108542e-02	ci left: 7.672937e-01	ci right 7.837455e-01	k: 7756	n:10000
LPHN2   10000 perm   3 sec   (3969 perm/sec)   p_kst 7.756000e-01   p_cons 3.321000e-01   p_joint 5.542000e-01

Outputting figure to mutsig2_images.part000000000098/LPHN2.13_4288_10000_0.7756_0.3321_0.5542.png
                gene_name: LPHN2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 13 percent done.
LPPR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.860549e-01	ci left: 3.853448e-02	ci right 4.653479e-02	k: 424	n:10000
Cons ci ratio: 5.704172e-01	ci left: 3.369688e-03	ci right 6.131041e-03	k: 46	n:10000
KS ci ratio: 1.430680e-02	ci left: 8.760270e-01	ci right 8.887493e-01	k: 8825	n:10000
LPPR4   10000 perm   2 sec   (4927 perm/sec)   p_kst 8.825000e-01   p_cons 4.600000e-03   p_joint 4.240000e-02

Joint ci ratio: 2.002444e-01	ci left: 1.691536e-02	ci right 2.072636e-02	k: 375	n:20000
Cons ci ratio: 4.346619e-01	ci left: 3.172987e-03	ci right 4.975909e-03	k: 80	n:20000
KS ci ratio: 8.919318e-03	ci left: 9.020751e-01	ci right 9.102064e-01	k: 18124	n:20000
LPPR4   20000 perm   5 sec   (4413 perm/sec)   p_kst 9.062000e-01   p_cons 4.000000e-03   p_joint 1.875000e-02

Joint ci ratio: 1.617551e-01	ci left: 1.764517e-02	ci right 2.078225e-02	k: 575	n:30000
Cons ci ratio: 3.527233e-01	ci left: 3.378230e-03	ci right 4.853689e-03	k: 122	n:30000
KS ci ratio: 7.163108e-03	ci left: 9.056552e-01	ci right 9.121987e-01	k: 27269	n:30000
LPPR4   30000 perm   7 sec   (4221 perm/sec)   p_kst 9.089667e-01   p_cons 4.066667e-03   p_joint 1.916667e-02

Joint ci ratio: 1.350605e-01	ci left: 1.923041e-02	ci right 2.203979e-02	k: 824	n:40000
Cons ci ratio: 2.891075e-01	ci left: 3.914153e-03	ci right 5.259327e-03	k: 182	n:40000
KS ci ratio: 6.220728e-03	ci left: 9.056323e-01	ci right 9.113082e-01	k: 36340	n:40000
LPPR4   40000 perm   10 sec   (4078 perm/sec)   p_kst 9.085000e-01   p_cons 4.550000e-03   p_joint 2.060000e-02

Joint ci ratio: 1.238565e-01	ci left: 1.842230e-02	ci right 2.087392e-02	k: 981	n:50000
Cons ci ratio: 2.637017e-01	ci left: 3.820107e-03	ci right 4.998573e-03	k: 219	n:50000
KS ci ratio: 5.573925e-03	ci left: 9.056353e-01	ci right 9.107172e-01	k: 45410	n:50000
LPPR4   50000 perm   13 sec   (3962 perm/sec)   p_kst 9.082000e-01   p_cons 4.380000e-03   p_joint 1.962000e-02

Joint ci ratio: 9.495988e-02	ci left: 2.630372e-02	ci right 2.894224e-02	k: 1656	n:60000
Cons ci ratio: 2.402693e-01	ci left: 3.886166e-03	ci right 4.962636e-03	k: 264	n:60000
KS ci ratio: 5.083130e-03	ci left: 9.060300e-01	ci right 9.106637e-01	k: 54502	n:60000
LPPR4   60000 perm   16 sec   (3869 perm/sec)   p_kst 9.083667e-01   p_cons 4.400000e-03   p_joint 2.760000e-02

Joint ci ratio: 8.230829e-02	ci left: 3.009239e-02	ci right 3.268951e-02	k: 2196	n:70000
Cons ci ratio: 2.258342e-01	ci left: 3.801810e-03	ci right 4.782838e-03	k: 299	n:70000
KS ci ratio: 4.727664e-03	ci left: 9.054307e-01	ci right 9.097355e-01	k: 63532	n:70000
LPPR4   70000 perm   18 sec   (3798 perm/sec)   p_kst 9.076000e-01   p_cons 4.271429e-03   p_joint 3.137143e-02

Joint ci ratio: 9.253973e-02	ci left: 2.092136e-02	ci right 2.296351e-02	k: 1754	n:80000
Cons ci ratio: 2.099784e-01	ci left: 3.882072e-03	ci right 4.804442e-03	k: 346	n:80000
KS ci ratio: 4.421639e-03	ci left: 9.055975e-01	ci right 9.096229e-01	k: 72610	n:80000
LPPR4   80000 perm   21 sec   (3733 perm/sec)   p_kst 9.076250e-01   p_cons 4.325000e-03   p_joint 2.192500e-02

Joint ci ratio: 7.630424e-02	ci left: 2.740075e-02	ci right 2.958534e-02	k: 2563	n:90000
Cons ci ratio: 1.955629e-01	ci left: 4.009778e-03	ci right 4.889300e-03	k: 399	n:90000
KS ci ratio: 4.160244e-03	ci left: 9.060594e-01	ci right 9.098476e-01	k: 81717	n:90000
LPPR4   90000 perm   25 sec   (3656 perm/sec)   p_kst 9.079667e-01   p_cons 4.433333e-03   p_joint 2.847778e-02

Joint ci ratio: 8.120839e-02	ci left: 2.184451e-02	ci right 2.370331e-02	k: 2276	n:100000
Cons ci ratio: 1.868933e-01	ci left: 3.970606e-03	ci right 4.798546e-03	k: 437	n:100000
KS ci ratio: 3.949257e-03	ci left: 9.060506e-01	ci right 9.096457e-01	k: 90786	n:100000
LPPR4   100000 perm   28 sec   (3595 perm/sec)   p_kst 9.078600e-01   p_cons 4.370000e-03   p_joint 2.276000e-02

Joint ci ratio: 7.283870e-02	ci left: 2.471928e-02	ci right 2.659675e-02	k: 2821	n:110000
Cons ci ratio: 1.798530e-01	ci left: 3.913211e-03	ci right 4.695098e-03	k: 472	n:110000
KS ci ratio: 3.771101e-03	ci left: 9.058825e-01	ci right 9.093141e-01	k: 99837	n:110000
LPPR4   110000 perm   31 sec   (3539 perm/sec)   p_kst 9.076091e-01   p_cons 4.290909e-03   p_joint 2.564545e-02

Joint ci ratio: 7.575737e-02	ci left: 2.099753e-02	ci right 2.265902e-02	k: 2618	n:120000
Cons ci ratio: 1.728705e-01	ci left: 3.897764e-03	ci right 4.643173e-03	k: 511	n:120000
KS ci ratio: 3.613790e-03	ci left: 9.058047e-01	ci right 9.090922e-01	k: 108895	n:120000
LPPR4   120000 perm   34 sec   (3485 perm/sec)   p_kst 9.074583e-01   p_cons 4.258333e-03   p_joint 2.181667e-02

Joint ci ratio: 7.041453e-02	ci left: 2.246408e-02	ci right 2.411113e-02	k: 3026	n:130000
Cons ci ratio: 1.652924e-01	ci left: 3.951556e-03	ci right 4.670831e-03	k: 559	n:130000
KS ci ratio: 3.471943e-03	ci left: 9.058733e-01	ci right 9.090315e-01	k: 117970	n:130000
LPPR4   130000 perm   38 sec   (3432 perm/sec)   p_kst 9.074615e-01   p_cons 4.300000e-03   p_joint 2.327692e-02

Joint ci ratio: 6.840132e-02	ci left: 2.213681e-02	ci right 2.371161e-02	k: 3208	n:140000
Cons ci ratio: 1.596895e-01	ci left: 3.943399e-03	ci right 4.634523e-03	k: 599	n:140000
KS ci ratio: 3.345303e-03	ci left: 9.059487e-01	ci right 9.089915e-01	k: 127047	n:140000
LPPR4   140000 perm   41 sec   (3382 perm/sec)   p_kst 9.074786e-01   p_cons 4.278571e-03   p_joint 2.291429e-02

Joint ci ratio: 6.616290e-02	ci left: 2.210956e-02	ci right 2.362896e-02	k: 3429	n:150000
Cons ci ratio: 1.547416e-01	ci left: 3.930276e-03	ci right 4.595778e-03	k: 638	n:150000
KS ci ratio: 3.229912e-03	ci left: 9.061031e-01	ci right 9.090411e-01	k: 136137	n:150000
LPPR4   150000 perm   45 sec   (3332 perm/sec)   p_kst 9.075800e-01   p_cons 4.253333e-03   p_joint 2.286000e-02

Joint ci ratio: 6.004826e-02	ci left: 2.516414e-02	ci right 2.672810e-02	k: 4150	n:160000
Cons ci ratio: 1.493446e-01	ci left: 3.967215e-03	ci right 4.613450e-03	k: 685	n:160000
KS ci ratio: 3.313709e-03	ci left: 8.959029e-01	ci right 8.988827e-01	k: 143584	n:160000
LPPR4   160000 perm   49 sec   (3284 perm/sec)   p_kst 8.974000e-01   p_cons 4.281250e-03   p_joint 2.593750e-02

Joint ci ratio: 5.902544e-02	ci left: 2.454129e-02	ci right 2.603967e-02	k: 4298	n:170000
Cons ci ratio: 1.453747e-01	ci left: 3.949135e-03	ci right 4.573840e-03	k: 723	n:170000
KS ci ratio: 3.211891e-03	ci left: 8.961136e-01	ci right 8.990022e-01	k: 152586	n:170000
LPPR4   170000 perm   52 sec   (3240 perm/sec)   p_kst 8.975647e-01   p_cons 4.252941e-03   p_joint 2.528235e-02

Joint ci ratio: 5.670060e-02	ci left: 2.513274e-02	ci right 2.660481e-02	k: 4655	n:180000
Cons ci ratio: 1.408723e-01	ci left: 3.981505e-03	ci right 4.590186e-03	k: 770	n:180000
KS ci ratio: 3.116455e-03	ci left: 8.964473e-01	ci right 8.992509e-01	k: 161614	n:180000
LPPR4   180000 perm   56 sec   (3197 perm/sec)   p_kst 8.978556e-01   p_cons 4.277778e-03   p_joint 2.586111e-02

Joint ci ratio: 5.492881e-02	ci left: 2.538772e-02	ci right 2.682679e-02	k: 4959	n:190000
Cons ci ratio: 1.370164e-01	ci left: 3.995484e-03	ci right 4.588219e-03	k: 814	n:190000
KS ci ratio: 3.031726e-03	ci left: 8.965828e-01	ci right 8.993103e-01	k: 170611	n:190000
LPPR4   190000 perm   60 sec   (3148 perm/sec)   p_kst 8.979526e-01   p_cons 4.284211e-03   p_joint 2.610000e-02

Joint ci ratio: 5.293237e-02	ci left: 2.598306e-02	ci right 2.740070e-02	k: 5337	n:200000
Cons ci ratio: 1.340103e-01	ci left: 3.974435e-03	ci right 4.550080e-03	k: 851	n:200000
KS ci ratio: 2.954759e-03	ci left: 8.966301e-01	ci right 8.992883e-01	k: 179593	n:200000
LPPR4   200000 perm   64 sec   (3104 perm/sec)   p_kst 8.979650e-01   p_cons 4.255000e-03   p_joint 2.668500e-02

Joint ci ratio: 5.198593e-02	ci left: 2.567615e-02	ci right 2.705125e-02	k: 5535	n:210000
Cons ci ratio: 1.301684e-01	ci left: 4.020015e-03	ci right 4.584279e-03	k: 902	n:210000
KS ci ratio: 2.883147e-03	ci left: 8.966881e-01	ci right 8.992818e-01	k: 188578	n:210000
LPPR4   210000 perm   69 sec   (3063 perm/sec)   p_kst 8.979905e-01   p_cons 4.295238e-03   p_joint 2.635714e-02

Joint ci ratio: 5.107460e-02	ci left: 2.541083e-02	ci right 2.674715e-02	k: 5736	n:220000
Cons ci ratio: 1.267056e-01	ci left: 4.057263e-03	ci right 4.610468e-03	k: 952	n:220000
KS ci ratio: 2.815173e-03	ci left: 8.968284e-01	ci right 8.993611e-01	k: 197582	n:220000
LPPR4   220000 perm   73 sec   (3020 perm/sec)   p_kst 8.981000e-01   p_cons 4.327273e-03   p_joint 2.607273e-02

Joint ci ratio: 4.925963e-02	ci left: 2.613519e-02	ci right 2.745938e-02	k: 6162	n:230000
Cons ci ratio: 1.241912e-01	ci left: 4.045102e-03	ci right 4.584898e-03	k: 991	n:230000
KS ci ratio: 2.750872e-03	ci left: 8.970182e-01	ci right 8.994935e-01	k: 206600	n:230000
LPPR4   230000 perm   77 sec   (2981 perm/sec)   p_kst 8.982609e-01   p_cons 4.308696e-03   p_joint 2.679130e-02

Joint ci ratio: 4.848634e-02	ci left: 2.586929e-02	ci right 2.715885e-02	k: 6362	n:240000
Cons ci ratio: 1.215840e-01	ci left: 4.050216e-03	ci right 4.578532e-03	k: 1034	n:240000
KS ci ratio: 2.692067e-03	ci left: 8.971048e-01	ci right 8.995272e-01	k: 215597	n:240000
LPPR4   240000 perm   82 sec   (2941 perm/sec)   p_kst 8.983208e-01   p_cons 4.308333e-03   p_joint 2.650833e-02

Joint ci ratio: 4.758468e-02	ci left: 2.579877e-02	ci right 2.706024e-02	k: 6606	n:250000
Cons ci ratio: 1.196371e-01	ci left: 4.020101e-03	ci right 4.535496e-03	k: 1068	n:250000
KS ci ratio: 2.638496e-03	ci left: 8.970724e-01	ci right 8.994464e-01	k: 224566	n:250000
LPPR4   250000 perm   86 sec   (2896 perm/sec)   p_kst 8.982640e-01   p_cons 4.272000e-03   p_joint 2.642400e-02

Joint ci ratio: 4.750633e-02	ci left: 2.491265e-02	ci right 2.612873e-02	k: 6634	n:260000
Cons ci ratio: 1.174072e-01	ci left: 4.018498e-03	ci right 4.523420e-03	k: 1109	n:260000
KS ci ratio: 2.586039e-03	ci left: 8.971821e-01	ci right 8.995090e-01	k: 233571	n:260000
LPPR4   260000 perm   91 sec   (2860 perm/sec)   p_kst 8.983500e-01   p_cons 4.265385e-03   p_joint 2.551538e-02

Joint ci ratio: 4.762142e-02	ci left: 2.389817e-02	ci right 2.506763e-02	k: 6609	n:270000
Cons ci ratio: 1.146491e-01	ci left: 4.063866e-03	ci right 4.561681e-03	k: 1163	n:270000
KS ci ratio: 2.537619e-03	ci left: 8.972096e-01	ci right 8.994929e-01	k: 242556	n:270000
LPPR4   270000 perm   96 sec   (2825 perm/sec)   p_kst 8.983556e-01   p_cons 4.307407e-03   p_joint 2.447778e-02

Joint ci ratio: 4.616553e-02	ci left: 2.452372e-02	ci right 2.568613e-02	k: 7028	n:280000
Cons ci ratio: 1.127762e-01	ci left: 4.054051e-03	ci right 4.542011e-03	k: 1202	n:280000
KS ci ratio: 2.493234e-03	ci left: 8.971315e-01	ci right 8.993746e-01	k: 251512	n:280000
LPPR4   280000 perm   100 sec   (2790 perm/sec)   p_kst 8.982571e-01   p_cons 4.292857e-03   p_joint 2.510000e-02

Joint ci ratio: 4.517844e-02	ci left: 2.473149e-02	ci right 2.587803e-02	k: 7337	n:290000
Cons ci ratio: 1.110371e-01	ci left: 4.041621e-03	ci right 4.520093e-03	k: 1240	n:290000
KS ci ratio: 2.448694e-03	ci left: 8.972393e-01	ci right 8.994424e-01	k: 260520	n:290000
LPPR4   290000 perm   105 sec   (2758 perm/sec)   p_kst 8.983448e-01   p_cons 4.275862e-03   p_joint 2.530000e-02

Joint ci ratio: 4.451857e-02	ci left: 2.463218e-02	ci right 2.575701e-02	k: 7557	n:300000
Cons ci ratio: 1.088644e-01	ci left: 4.068987e-03	ci right 4.540668e-03	k: 1290	n:300000
KS ci ratio: 2.407907e-03	ci left: 8.972296e-01	ci right 8.993960e-01	k: 269495	n:300000
LPPR4   300000 perm   110 sec   (2726 perm/sec)   p_kst 8.983167e-01   p_cons 4.300000e-03   p_joint 2.519000e-02

Joint ci ratio: 4.417305e-02	ci left: 2.422667e-02	ci right 2.532418e-02	k: 7679	n:310000
Cons ci ratio: 1.072571e-01	ci left: 4.060134e-03	ci right 4.523401e-03	k: 1329	n:310000
KS ci ratio: 2.366708e-03	ci left: 8.974057e-01	ci right 8.995353e-01	k: 278527	n:310000
LPPR4   310000 perm   115 sec   (2694 perm/sec)   p_kst 8.984742e-01   p_cons 4.287097e-03   p_joint 2.477097e-02

Joint ci ratio: 4.347664e-02	ci left: 2.423609e-02	ci right 2.531629e-02	k: 7927	n:320000
Cons ci ratio: 1.054870e-01	ci left: 4.070140e-03	ci right 4.526409e-03	k: 1374	n:320000
KS ci ratio: 2.330421e-03	ci left: 8.973449e-01	ci right 8.994416e-01	k: 287487	n:320000
LPPR4   320000 perm   120 sec   (2663 perm/sec)   p_kst 8.983969e-01   p_cons 4.293750e-03   p_joint 2.477187e-02

Joint ci ratio: 4.311047e-02	ci left: 2.391524e-02	ci right 2.497193e-02	k: 8065	n:330000
Cons ci ratio: 1.043195e-01	ci left: 4.038274e-03	ci right 4.485652e-03	k: 1405	n:330000
KS ci ratio: 2.295714e-03	ci left: 8.972911e-01	ci right 8.993564e-01	k: 296448	n:330000
LPPR4   330000 perm   125 sec   (2633 perm/sec)   p_kst 8.983273e-01   p_cons 4.257576e-03   p_joint 2.443939e-02

Joint ci ratio: 4.272654e-02	ci left: 2.364240e-02	ci right 2.467750e-02	k: 8213	n:340000
Cons ci ratio: 1.026888e-01	ci left: 4.048429e-03	ci right 4.489498e-03	k: 1450	n:340000
KS ci ratio: 2.259380e-03	ci left: 8.974948e-01	ci right 8.995278e-01	k: 305495	n:340000
LPPR4   340000 perm   131 sec   (2605 perm/sec)   p_kst 8.985147e-01   p_cons 4.264706e-03   p_joint 2.415588e-02

Joint ci ratio: 4.205974e-02	ci left: 2.370755e-02	ci right 2.472892e-02	k: 8475	n:350000
Cons ci ratio: 1.014049e-01	ci left: 4.035774e-03	ci right 4.469640e-03	k: 1487	n:350000
KS ci ratio: 2.226385e-03	ci left: 8.975493e-01	ci right 8.995526e-01	k: 314494	n:350000
LPPR4   350000 perm   136 sec   (2575 perm/sec)   p_kst 8.985543e-01   p_cons 4.248571e-03   p_joint 2.421429e-02

Joint ci ratio: 4.108949e-02	ci left: 2.415143e-02	ci right 2.516735e-02	k: 8876	n:360000
Cons ci ratio: 1.003333e-01	ci left: 4.010313e-03	ci right 4.436617e-03	k: 1519	n:360000
KS ci ratio: 2.195397e-03	ci left: 8.975508e-01	ci right 8.995261e-01	k: 323475	n:360000
LPPR4   360000 perm   141 sec   (2548 perm/sec)   p_kst 8.985417e-01   p_cons 4.219444e-03   p_joint 2.465556e-02

Joint ci ratio: 4.081009e-02	ci left: 2.383299e-02	ci right 2.482853e-02	k: 9001	n:370000
Cons ci ratio: 9.859557e-02	ci left: 4.044245e-03	ci right 4.466280e-03	k: 1573	n:370000
KS ci ratio: 2.166406e-03	ci left: 8.974899e-01	ci right 8.994390e-01	k: 332433	n:370000
LPPR4   370000 perm   147 sec   (2522 perm/sec)   p_kst 8.984676e-01   p_cons 4.251351e-03   p_joint 2.432703e-02

Outputting figure to mutsig2_images.part000000000098/LPPR4.13_2320_370000_0.89847_0.0042514_0.024327.png
                gene_name: LPPR4
               theta_stop: 0.099 
                    nperm: 370000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.0043 
      ci_cons_bounds_left: 0.0040 
     ci_cons_bounds_right: 0.0045 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.025 

Current progress: 14 percent done.
LPIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.769573e-02	ci left: 6.576653e-01	ci right 6.762373e-01	k: 6670	n:10000
Cons ci ratio: 5.211988e-02	ci left: 3.517769e-01	ci right 3.707040e-01	k: 3612	n:10000
KS ci ratio: 2.862992e-02	ci left: 6.426714e-01	ci right 6.614400e-01	k: 6521	n:10000
LPIN1   10000 perm   2 sec   (4833 perm/sec)   p_kst 6.521000e-01   p_cons 3.612000e-01   p_joint 6.670000e-01

Outputting figure to mutsig2_images.part000000000098/LPIN1.11_2749_10000_0.6521_0.3612_0.667.png
                gene_name: LPIN1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 16 percent done.
LRGUK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.416137e-02	ci left: 5.585233e-01	ci right 5.780369e-01	k: 5683	n:10000
Cons ci ratio: 1.672674e-02	ci left: 8.387749e-01	ci right 8.530230e-01	k: 8460	n:10000
KS ci ratio: 4.492253e-02	ci left: 4.224616e-01	ci right 4.419779e-01	k: 4322	n:10000
LRGUK   10000 perm   2 sec   (4607 perm/sec)   p_kst 4.322000e-01   p_cons 8.460000e-01   p_joint 5.683000e-01

Outputting figure to mutsig2_images.part000000000098/LRGUK.11_2558_10000_0.4322_0.846_0.5683.png
                gene_name: LRGUK
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 17 percent done.
LOXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.258860e-01	ci left: 6.616170e-03	ci right 1.027885e-02	k: 83	n:10000
Cons ci ratio: 1.743974e-02	ci left: 8.273742e-01	ci right 8.420303e-01	k: 8348	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
LOXL2   10000 perm   2 sec   (4804 perm/sec)   p_kst 3.000000e-04   p_cons 8.348000e-01   p_joint 8.300000e-03

Joint ci ratio: 4.745492e-01	ci left: 2.597119e-03	ci right 4.252457e-03	k: 67	n:20000
Cons ci ratio: 1.224169e-02	ci left: 8.316045e-01	ci right 8.418974e-01	k: 16736	n:20000
KS ci ratio: 1.131239e+00	ci left: 2.745890e-04	ci right 9.838883e-04	k: 11	n:20000
LOXL2   20000 perm   5 sec   (4299 perm/sec)   p_kst 5.500000e-04   p_cons 8.368000e-01   p_joint 3.350000e-03

Joint ci ratio: 3.893910e-01	ci left: 2.712931e-03	ci right 4.052764e-03	k: 100	n:30000
Cons ci ratio: 1.003292e-02	ci left: 8.315252e-01	ci right 8.399431e-01	k: 25073	n:30000
KS ci ratio: 8.551005e-01	ci left: 4.072634e-04	ci right 1.029426e-03	k: 20	n:30000
LOXL2   30000 perm   7 sec   (4071 perm/sec)   p_kst 6.666667e-04   p_cons 8.357667e-01   p_joint 3.333333e-03

Joint ci ratio: 3.715487e-01	ci left: 2.260691e-03	ci right 3.313558e-03	k: 110	n:40000
Cons ci ratio: 8.699504e-03	ci left: 8.317544e-01	ci right 8.390468e-01	k: 33417	n:40000
KS ci ratio: 7.154134e-01	ci left: 4.855960e-04	ci right 1.041056e-03	k: 29	n:40000
LOXL2   40000 perm   10 sec   (3963 perm/sec)   p_kst 7.250000e-04   p_cons 8.354250e-01   p_joint 2.750000e-03

Joint ci ratio: 3.433561e-01	ci left: 2.154454e-03	ci right 3.064827e-03	k: 129	n:50000
Cons ci ratio: 7.806062e-03	ci left: 8.312535e-01	ci right 8.377876e-01	k: 41727	n:50000
KS ci ratio: 6.274512e-01	ci left: 5.378756e-04	ci right 1.043012e-03	k: 38	n:50000
LOXL2   50000 perm   13 sec   (3872 perm/sec)   p_kst 7.600000e-04   p_cons 8.345400e-01   p_joint 2.580000e-03

Joint ci ratio: 2.312394e-01	ci left: 4.215580e-03	ci right 5.333151e-03	k: 285	n:60000
Cons ci ratio: 7.130377e-03	ci left: 8.313676e-01	ci right 8.373334e-01	k: 50062	n:60000
KS ci ratio: 6.046524e-01	ci left: 4.904150e-04	ci right 9.269059e-04	k: 41	n:60000
LOXL2   60000 perm   16 sec   (3800 perm/sec)   p_kst 6.833333e-04   p_cons 8.343667e-01   p_joint 4.750000e-03

Joint ci ratio: 2.450307e-01	ci left: 3.196683e-03	ci right 4.102371e-03	k: 254	n:70000
Cons ci ratio: 6.603706e-03	ci left: 8.314959e-01	ci right 8.370192e-01	k: 58399	n:70000
KS ci ratio: 5.145043e-01	ci left: 6.167886e-04	ci right 1.054875e-03	k: 57	n:70000
LOXL2   70000 perm   19 sec   (3722 perm/sec)   p_kst 8.142857e-04   p_cons 8.342714e-01   p_joint 3.628571e-03

Joint ci ratio: 2.500543e-01	ci left: 2.679759e-03	ci right 3.456972e-03	k: 244	n:80000
Cons ci ratio: 6.500850e-03	ci left: 8.169805e-01	ci right 8.223213e-01	k: 65573	n:80000
KS ci ratio: 4.554771e-01	ci left: 7.153204e-04	ci right 1.147197e-03	k: 73	n:80000
LOXL2   80000 perm   22 sec   (3656 perm/sec)   p_kst 9.125000e-04   p_cons 8.196625e-01   p_joint 3.050000e-03

Joint ci ratio: 2.409039e-01	ci left: 2.580119e-03	ci right 3.296958e-03	k: 263	n:90000
Cons ci ratio: 6.132654e-03	ci left: 8.169603e-01	ci right 8.219969e-01	k: 73754	n:90000
KS ci ratio: 4.326919e-01	ci left: 7.147922e-04	ci right 1.118496e-03	k: 81	n:90000
LOXL2   90000 perm   25 sec   (3595 perm/sec)   p_kst 9.000000e-04   p_cons 8.194889e-01   p_joint 2.922222e-03

Joint ci ratio: 2.456489e-01	ci left: 2.228151e-03	ci right 2.861253e-03	k: 253	n:100000
Cons ci ratio: 5.818117e-03	ci left: 8.170819e-01	ci right 8.218596e-01	k: 81948	n:100000
KS ci ratio: 4.084982e-01	ci left: 7.327366e-04	ci right 1.117163e-03	k: 91	n:100000
LOXL2   100000 perm   28 sec   (3535 perm/sec)   p_kst 9.100000e-04   p_cons 8.194800e-01   p_joint 2.530000e-03

Joint ci ratio: 2.418887e-01	ci left: 2.093859e-03	ci right 2.678327e-03	k: 261	n:110000
Cons ci ratio: 5.545955e-03	ci left: 8.172690e-01	ci right 8.218232e-01	k: 90151	n:110000
KS ci ratio: 3.898737e-01	ci left: 7.397320e-04	ci right 1.105589e-03	k: 100	n:110000
LOXL2   110000 perm   32 sec   (3478 perm/sec)   p_kst 9.090909e-04   p_cons 8.195545e-01   p_joint 2.372727e-03

Joint ci ratio: 2.323328e-01	ci left: 2.091816e-03	ci right 2.649336e-03	k: 283	n:120000
Cons ci ratio: 5.309179e-03	ci left: 8.174042e-01	ci right 8.217637e-01	k: 98351	n:120000
KS ci ratio: 3.653652e-01	ci left: 7.836948e-04	ci right 1.141131e-03	k: 114	n:120000
LOXL2   120000 perm   35 sec   (3418 perm/sec)   p_kst 9.500000e-04   p_cons 8.195917e-01   p_joint 2.358333e-03

Joint ci ratio: 2.287497e-01	ci left: 1.996128e-03	ci right 2.518780e-03	k: 292	n:130000
Cons ci ratio: 5.101677e-03	ci left: 8.174447e-01	ci right 8.216333e-01	k: 106541	n:130000
KS ci ratio: 3.547322e-01	ci left: 7.723859e-04	ci right 1.112050e-03	k: 121	n:130000
LOXL2   130000 perm   39 sec   (3360 perm/sec)   p_kst 9.307692e-04   p_cons 8.195462e-01   p_joint 2.246154e-03

Joint ci ratio: 2.307497e-01	ci left: 1.819869e-03	ci right 2.301128e-03	k: 287	n:140000
Cons ci ratio: 4.918526e-03	ci left: 8.173747e-01	ci right 8.214120e-01	k: 114716	n:140000
KS ci ratio: 3.436459e-01	ci left: 7.693474e-04	ci right 1.094752e-03	k: 129	n:140000
LOXL2   140000 perm   42 sec   (3311 perm/sec)   p_kst 9.214286e-04   p_cons 8.194000e-01   p_joint 2.050000e-03

Joint ci ratio: 1.769788e-01	ci left: 2.971462e-03	ci right 3.554667e-03	k: 488	n:150000
Cons ci ratio: 4.750676e-03	ci left: 8.175107e-01	ci right 8.214103e-01	k: 122920	n:150000
KS ci ratio: 3.242625e-01	ci left: 8.157912e-04	ci right 1.137335e-03	k: 145	n:150000
LOXL2   150000 perm   46 sec   (3261 perm/sec)   p_kst 9.666667e-04   p_cons 8.194667e-01   p_joint 3.253333e-03

Joint ci ratio: 1.731329e-01	ci left: 2.917214e-03	ci right 3.476029e-03	k: 510	n:160000
Cons ci ratio: 4.604743e-03	ci left: 8.172552e-01	ci right 8.210333e-01	k: 131064	n:160000
KS ci ratio: 3.188535e-01	ci left: 7.935307e-04	ci right 1.100018e-03	k: 150	n:160000
LOXL2   160000 perm   50 sec   (3216 perm/sec)   p_kst 9.375000e-04   p_cons 8.191500e-01   p_joint 3.187500e-03

Joint ci ratio: 1.755783e-01	ci left: 2.666823e-03	ci right 3.185653e-03	k: 496	n:170000
Cons ci ratio: 4.464817e-03	ci left: 8.174744e-01	ci right 8.211382e-01	k: 139283	n:170000
KS ci ratio: 3.127046e-01	ci left: 7.793488e-04	ci right 1.073395e-03	k: 156	n:170000
LOXL2   170000 perm   54 sec   (3173 perm/sec)   p_kst 9.176471e-04   p_cons 8.193118e-01   p_joint 2.917647e-03

Joint ci ratio: 1.708327e-01	ci left: 2.667479e-03	ci right 3.170964e-03	k: 524	n:180000
Cons ci ratio: 4.344321e-03	ci left: 8.171632e-01	ci right 8.207265e-01	k: 147411	n:180000
KS ci ratio: 3.041098e-01	ci left: 7.821833e-04	ci right 1.067618e-03	k: 165	n:180000
LOXL2   180000 perm   58 sec   (3128 perm/sec)   p_kst 9.166667e-04   p_cons 8.189500e-01   p_joint 2.911111e-03

Joint ci ratio: 1.679823e-01	ci left: 2.617799e-03	ci right 3.102829e-03	k: 542	n:190000
Cons ci ratio: 4.232691e-03	ci left: 8.169126e-01	ci right 8.203829e-01	k: 155544	n:190000
KS ci ratio: 2.953435e-01	ci left: 7.896912e-04	ci right 1.068004e-03	k: 175	n:190000
LOXL2   190000 perm   62 sec   (3086 perm/sec)   p_kst 9.210526e-04   p_cons 8.186526e-01   p_joint 2.852632e-03

Joint ci ratio: 1.481147e-01	ci left: 3.231448e-03	ci right 3.753106e-03	k: 697	n:200000
Cons ci ratio: 4.127220e-03	ci left: 8.168338e-01	ci right 8.202170e-01	k: 163706	n:200000
KS ci ratio: 2.857603e-01	ci left: 8.058363e-04	ci right 1.078962e-03	k: 187	n:200000
LOXL2   200000 perm   66 sec   (3047 perm/sec)   p_kst 9.350000e-04   p_cons 8.185300e-01   p_joint 3.485000e-03

Joint ci ratio: 1.446343e-01	ci left: 3.233545e-03	ci right 3.742217e-03	k: 731	n:210000
Cons ci ratio: 4.023705e-03	ci left: 8.171745e-01	ci right 8.204739e-01	k: 171954	n:210000
KS ci ratio: 2.784502e-01	ci left: 8.117143e-04	ci right 1.078561e-03	k: 197	n:210000
LOXL2   210000 perm   70 sec   (3009 perm/sec)   p_kst 9.380952e-04   p_cons 8.188286e-01   p_joint 3.480952e-03

Joint ci ratio: 1.312805e-01	ci left: 3.771303e-03	ci right 4.305531e-03	k: 887	n:220000
Cons ci ratio: 3.932776e-03	ci left: 8.170928e-01	ci right 8.203170e-01	k: 180116	n:220000
KS ci ratio: 2.716740e-01	ci left: 8.171387e-04	ci right 1.078117e-03	k: 207	n:220000
LOXL2   220000 perm   74 sec   (2970 perm/sec)   p_kst 9.409091e-04   p_cons 8.187091e-01   p_joint 4.031818e-03

Joint ci ratio: 1.344443e-01	ci left: 3.434956e-03	ci right 3.934202e-03	k: 846	n:230000
Cons ci ratio: 3.841659e-03	ci left: 8.174901e-01	ci right 8.206410e-01	k: 188386	n:230000
KS ci ratio: 2.672162e-01	ci left: 8.099896e-04	ci right 1.063728e-03	k: 214	n:230000
LOXL2   230000 perm   78 sec   (2933 perm/sec)   p_kst 9.304348e-04   p_cons 8.190696e-01   p_joint 3.678261e-03

Joint ci ratio: 1.329662e-01	ci left: 3.368344e-03	ci right 3.852099e-03	k: 865	n:240000
Cons ci ratio: 3.760386e-03	ci left: 8.175540e-01	ci right 8.206383e-01	k: 196584	n:240000
KS ci ratio: 2.606312e-01	ci left: 8.190420e-04	ci right 1.068264e-03	k: 225	n:240000
LOXL2   240000 perm   83 sec   (2897 perm/sec)   p_kst 9.375000e-04   p_cons 8.191000e-01   p_joint 3.604167e-03

Joint ci ratio: 1.329758e-01	ci left: 3.233595e-03	ci right 3.698034e-03	k: 865	n:250000
Cons ci ratio: 3.683864e-03	ci left: 8.176295e-01	ci right 8.206511e-01	k: 204786	n:250000
KS ci ratio: 2.566875e-01	ci left: 8.124648e-04	ci right 1.055345e-03	k: 232	n:250000
LOXL2   250000 perm   87 sec   (2861 perm/sec)   p_kst 9.280000e-04   p_cons 8.191440e-01   p_joint 3.460000e-03

Joint ci ratio: 1.306588e-01	ci left: 3.224524e-03	ci right 3.678964e-03	k: 896	n:260000
Cons ci ratio: 3.615018e-03	ci left: 8.174374e-01	ci right 8.204016e-01	k: 212920	n:260000
KS ci ratio: 2.513501e-01	ci left: 8.172296e-04	ci right 1.055660e-03	k: 242	n:260000
LOXL2   260000 perm   92 sec   (2828 perm/sec)   p_kst 9.307692e-04   p_cons 8.189231e-01   p_joint 3.446154e-03

Joint ci ratio: 1.282509e-01	ci left: 3.226945e-03	ci right 3.672707e-03	k: 930	n:270000
Cons ci ratio: 3.548515e-03	ci left: 8.173753e-01	ci right 8.202845e-01	k: 221085	n:270000
KS ci ratio: 2.473127e-01	ci left: 8.147401e-04	ci right 1.048039e-03	k: 250	n:270000
LOXL2   270000 perm   97 sec   (2793 perm/sec)   p_kst 9.259259e-04   p_cons 8.188333e-01   p_joint 3.444444e-03

Joint ci ratio: 1.260369e-01	ci left: 3.225806e-03	ci right 3.663143e-03	k: 963	n:280000
Cons ci ratio: 3.483789e-03	ci left: 8.174685e-01	ci right 8.203249e-01	k: 229292	n:280000
KS ci ratio: 2.425284e-01	ci left: 8.191651e-04	ci right 1.048510e-03	k: 260	n:280000
LOXL2   280000 perm   102 sec   (2758 perm/sec)   p_kst 9.285714e-04   p_cons 8.189000e-01   p_joint 3.439286e-03

Joint ci ratio: 1.086030e-01	ci left: 4.229443e-03	ci right 4.718472e-03	k: 1296	n:290000
Cons ci ratio: 3.425664e-03	ci left: 8.172791e-01	ci right 8.200870e-01	k: 237419	n:290000
KS ci ratio: 2.411491e-01	ci left: 8.006350e-04	ci right 1.023326e-03	k: 263	n:290000
LOXL2   290000 perm   106 sec   (2726 perm/sec)   p_kst 9.068966e-04   p_cons 8.186862e-01   p_joint 4.468966e-03

Joint ci ratio: 1.066868e-01	ci left: 4.240911e-03	ci right 4.722071e-03	k: 1343	n:300000
Cons ci ratio: 3.368345e-03	ci left: 8.172798e-01	ci right 8.200407e-01	k: 245599	n:300000
KS ci ratio: 2.362761e-01	ci left: 8.084214e-04	ci right 1.028071e-03	k: 274	n:300000
LOXL2   300000 perm   111 sec   (2696 perm/sec)   p_kst 9.133333e-04   p_cons 8.186633e-01   p_joint 4.476667e-03

Joint ci ratio: 1.121928e-01	ci left: 3.702441e-03	ci right 4.145621e-03	k: 1215	n:310000
Cons ci ratio: 3.315970e-03	ci left: 8.170869e-01	ci right 8.198040e-01	k: 253719	n:310000
KS ci ratio: 2.320936e-01	ci left: 8.127092e-04	ci right 1.029054e-03	k: 284	n:310000
LOXL2   310000 perm   116 sec   (2664 perm/sec)   p_kst 9.161290e-04   p_cons 8.184484e-01   p_joint 3.919355e-03

Joint ci ratio: 1.109698e-01	ci left: 3.668757e-03	ci right 4.102804e-03	k: 1242	n:320000
Cons ci ratio: 3.263248e-03	ci left: 8.171539e-01	ci right 8.198279e-01	k: 261918	n:320000
KS ci ratio: 2.292956e-01	ci left: 8.079226e-04	ci right 1.020033e-03	k: 291	n:320000
LOXL2   320000 perm   122 sec   (2630 perm/sec)   p_kst 9.093750e-04   p_cons 8.184938e-01   p_joint 3.881250e-03

Joint ci ratio: 1.101784e-01	ci left: 3.610613e-03	ci right 4.034537e-03	k: 1260	n:330000
Cons ci ratio: 3.213225e-03	ci left: 8.171928e-01	ci right 8.198258e-01	k: 270109	n:330000
KS ci ratio: 2.254671e-01	ci left: 8.120174e-04	ci right 1.021149e-03	k: 301	n:330000
LOXL2   330000 perm   127 sec   (2596 perm/sec)   p_kst 9.121212e-04   p_cons 8.185121e-01   p_joint 3.818182e-03

Joint ci ratio: 1.433636e-01	ci left: 2.036792e-03	ci right 2.354141e-03	k: 745	n:340000
Cons ci ratio: 3.003879e-03	ci left: 8.323202e-01	ci right 8.348270e-01	k: 283416	n:340000
KS ci ratio: 2.239903e-01	ci left: 7.992364e-04	ci right 1.003542e-03	k: 305	n:340000
LOXL2   340000 perm   132 sec   (2568 perm/sec)   p_kst 8.970588e-04   p_cons 8.335765e-01   p_joint 2.191176e-03

Joint ci ratio: 1.476968e-01	ci left: 1.860201e-03	ci right 2.159569e-03	k: 702	n:350000
Cons ci ratio: 2.962385e-03	ci left: 8.321757e-01	ci right 8.346474e-01	k: 291695	n:350000
KS ci ratio: 2.211188e-01	ci left: 7.979840e-04	ci right 9.989988e-04	k: 313	n:350000
LOXL2   350000 perm   138 sec   (2541 perm/sec)   p_kst 8.942857e-04   p_cons 8.334143e-01   p_joint 2.005714e-03

Joint ci ratio: 1.478063e-01	ci left: 1.805850e-03	ci right 2.096705e-03	k: 701	n:360000
Cons ci ratio: 2.921861e-03	ci left: 8.321063e-01	ci right 8.345439e-01	k: 299998	n:360000
KS ci ratio: 2.183550e-01	ci left: 7.968170e-04	ci right 9.946922e-04	k: 321	n:360000
LOXL2   360000 perm   143 sec   (2513 perm/sec)   p_kst 8.916667e-04   p_cons 8.333278e-01   p_joint 1.947222e-03

Joint ci ratio: 1.457447e-01	ci left: 1.809112e-03	ci right 2.096075e-03	k: 721	n:370000
Cons ci ratio: 2.881805e-03	ci left: 8.321520e-01	ci right 8.345563e-01	k: 308342	n:370000
KS ci ratio: 2.137561e-01	ci left: 8.110726e-04	ci right 1.007690e-03	k: 335	n:370000
LOXL2   370000 perm   149 sec   (2487 perm/sec)   p_kst 9.054054e-04   p_cons 8.333568e-01   p_joint 1.948649e-03

Joint ci ratio: 1.437670e-01	ci left: 1.812229e-03	ci right 2.095451e-03	k: 741	n:380000
Cons ci ratio: 2.843056e-03	ci left: 8.322246e-01	ci right 8.345966e-01	k: 316697	n:380000
KS ci ratio: 2.100375e-01	ci left: 8.196323e-04	ci right 1.014423e-03	k: 347	n:380000
LOXL2   380000 perm   154 sec   (2461 perm/sec)   p_kst 9.131579e-04   p_cons 8.334132e-01   p_joint 1.950000e-03

Joint ci ratio: 1.301538e-01	ci left: 2.169449e-03	ci right 2.473918e-03	k: 904	n:390000
Cons ci ratio: 2.808369e-03	ci left: 8.320417e-01	ci right 8.343842e-01	k: 324954	n:390000
KS ci ratio: 2.070831e-01	ci left: 8.229181e-04	ci right 1.015391e-03	k: 357	n:390000
LOXL2   390000 perm   160 sec   (2436 perm/sec)   p_kst 9.153846e-04   p_cons 8.332154e-01   p_joint 2.317949e-03

Joint ci ratio: 1.399520e-01	ci left: 1.820481e-03	ci right 2.096813e-03	k: 782	n:400000
Cons ci ratio: 2.809956e-03	ci left: 8.283384e-01	ci right 8.306718e-01	k: 331803	n:400000
KS ci ratio: 2.059371e-01	ci left: 8.118275e-04	ci right 1.000523e-03	k: 361	n:400000
LOXL2   400000 perm   166 sec   (2413 perm/sec)   p_kst 9.025000e-04   p_cons 8.295075e-01   p_joint 1.955000e-03

Joint ci ratio: 1.377690e-01	ci left: 1.834937e-03	ci right 2.108763e-03	k: 807	n:410000
Cons ci ratio: 2.775430e-03	ci left: 8.283575e-01	ci right 8.306622e-01	k: 340100	n:410000
KS ci ratio: 2.028773e-01	ci left: 8.174832e-04	ci right 1.004320e-03	k: 372	n:410000
LOXL2   410000 perm   172 sec   (2389 perm/sec)   p_kst 9.073171e-04   p_cons 8.295122e-01   p_joint 1.968293e-03

Joint ci ratio: 1.376017e-01	ci left: 1.795844e-03	ci right 2.063483e-03	k: 809	n:420000
Cons ci ratio: 2.742008e-03	ci left: 8.283902e-01	ci right 8.306671e-01	k: 348403	n:420000
KS ci ratio: 1.994308e-01	ci left: 8.274133e-04	ci right 1.012916e-03	k: 385	n:420000
LOXL2   420000 perm   178 sec   (2365 perm/sec)   p_kst 9.166667e-04   p_cons 8.295310e-01   p_joint 1.926190e-03

Joint ci ratio: 1.376900e-01	ci left: 1.751832e-03	ci right 2.013093e-03	k: 808	n:430000
Cons ci ratio: 2.709854e-03	ci left: 8.284122e-01	ci right 8.306624e-01	k: 356702	n:430000
KS ci ratio: 1.976472e-01	ci left: 8.236408e-04	ci right 1.006448e-03	k: 392	n:430000
LOXL2   430000 perm   184 sec   (2343 perm/sec)   p_kst 9.116279e-04   p_cons 8.295395e-01   p_joint 1.879070e-03

Joint ci ratio: 1.364316e-01	ci left: 1.744939e-03	ci right 2.002601e-03	k: 823	n:440000
Cons ci ratio: 2.680205e-03	ci left: 8.282852e-01	ci right 8.305104e-01	k: 364936	n:440000
KS ci ratio: 1.951794e-01	ci left: 8.265314e-04	ci right 1.007417e-03	k: 402	n:440000
LOXL2   440000 perm   190 sec   (2319 perm/sec)   p_kst 9.136364e-04   p_cons 8.294000e-01   p_joint 1.870455e-03

Joint ci ratio: 1.187533e-01	ci left: 2.272075e-03	ci right 2.561058e-03	k: 1086	n:450000
Cons ci ratio: 2.650341e-03	ci left: 8.282888e-01	ci right 8.304892e-01	k: 373226	n:450000
KS ci ratio: 1.905071e-01	ci left: 8.504640e-04	ci right 1.031616e-03	k: 422	n:450000
LOXL2   450000 perm   196 sec   (2296 perm/sec)   p_kst 9.377778e-04   p_cons 8.293911e-01   p_joint 2.413333e-03

Joint ci ratio: 1.187564e-01	ci left: 2.222679e-03	ci right 2.505387e-03	k: 1086	n:460000
Cons ci ratio: 2.621836e-03	ci left: 8.282510e-01	ci right 8.304275e-01	k: 381497	n:460000
KS ci ratio: 1.878605e-01	ci left: 8.568275e-04	ci right 1.036511e-03	k: 434	n:460000
LOXL2   460000 perm   202 sec   (2275 perm/sec)   p_kst 9.434783e-04   p_cons 8.293413e-01   p_joint 2.360870e-03

Joint ci ratio: 1.175197e-01	ci left: 2.222878e-03	ci right 2.502462e-03	k: 1109	n:470000
Cons ci ratio: 2.593373e-03	ci left: 8.283087e-01	ci right 8.304617e-01	k: 389812	n:470000
KS ci ratio: 1.863675e-01	ci left: 8.527929e-04	ci right 1.030048e-03	k: 441	n:470000
LOXL2   470000 perm   209 sec   (2253 perm/sec)   p_kst 9.382979e-04   p_cons 8.293872e-01   p_joint 2.359574e-03

Joint ci ratio: 1.175226e-01	ci left: 2.176565e-03	ci right 2.450331e-03	k: 1109	n:480000
Cons ci ratio: 2.565950e-03	ci left: 8.283495e-01	ci right 8.304798e-01	k: 398120	n:480000
KS ci ratio: 1.847037e-01	ci left: 8.509189e-04	ci right 1.026029e-03	k: 449	n:480000
LOXL2   480000 perm   215 sec   (2231 perm/sec)   p_kst 9.354167e-04   p_cons 8.294167e-01   p_joint 2.310417e-03

Joint ci ratio: 1.161696e-01	ci left: 2.183656e-03	ci right 2.454935e-03	k: 1135	n:490000
Cons ci ratio: 2.540349e-03	ci left: 8.282804e-01	ci right 8.303892e-01	k: 406375	n:490000
KS ci ratio: 1.824865e-01	ci left: 8.549706e-04	ci right 1.028569e-03	k: 460	n:490000
LOXL2   490000 perm   222 sec   (2210 perm/sec)   p_kst 9.387755e-04   p_cons 8.293367e-01   p_joint 2.316327e-03

Joint ci ratio: 1.145662e-01	ci left: 2.202137e-03	ci right 2.471681e-03	k: 1167	n:500000
Cons ci ratio: 2.514681e-03	ci left: 8.283063e-01	ci right 8.303938e-01	k: 414676	n:500000
KS ci ratio: 1.803473e-01	ci left: 8.588723e-04	ci right 1.030995e-03	k: 471	n:500000
LOXL2   500000 perm   228 sec   (2189 perm/sec)   p_kst 9.420000e-04   p_cons 8.293520e-01   p_joint 2.334000e-03

Joint ci ratio: 1.161237e-01	ci left: 2.099921e-03	ci right 2.360687e-03	k: 1136	n:510000
Cons ci ratio: 2.489380e-03	ci left: 8.283766e-01	ci right 8.304432e-01	k: 423000	n:510000
KS ci ratio: 1.779132e-01	ci left: 8.663793e-04	ci right 1.037411e-03	k: 484	n:510000
LOXL2   510000 perm   235 sec   (2168 perm/sec)   p_kst 9.490196e-04   p_cons 8.294118e-01   p_joint 2.227451e-03

Joint ci ratio: 1.157189e-01	ci left: 2.074475e-03	ci right 2.331122e-03	k: 1144	n:520000
Cons ci ratio: 2.465011e-03	ci left: 8.284230e-01	ci right 8.304695e-01	k: 431313	n:520000
KS ci ratio: 1.773666e-01	ci left: 8.552304e-04	ci right 1.023487e-03	k: 487	n:520000
LOXL2   520000 perm   242 sec   (2145 perm/sec)   p_kst 9.365385e-04   p_cons 8.294481e-01   p_joint 2.200000e-03

Joint ci ratio: 1.148203e-01	ci left: 2.068317e-03	ci right 2.322080e-03	k: 1162	n:530000
Cons ci ratio: 2.441050e-03	ci left: 8.285018e-01	ci right 8.305285e-01	k: 439644	n:530000
KS ci ratio: 1.750497e-01	ci left: 8.625408e-04	ci right 1.029784e-03	k: 500	n:530000
LOXL2   530000 perm   249 sec   (2126 perm/sec)   p_kst 9.433962e-04   p_cons 8.295170e-01   p_joint 2.192453e-03

Joint ci ratio: 1.146253e-01	ci left: 2.037207e-03	ci right 2.286701e-03	k: 1166	n:540000
Cons ci ratio: 2.418092e-03	ci left: 8.285407e-01	ci right 8.305484e-01	k: 447955	n:540000
KS ci ratio: 1.736689e-01	ci left: 8.607361e-04	ci right 1.026175e-03	k: 508	n:540000
LOXL2   540000 perm   256 sec   (2106 perm/sec)   p_kst 9.407407e-04   p_cons 8.295463e-01   p_joint 2.159259e-03

Joint ci ratio: 1.056593e-01	ci left: 2.364431e-03	ci right 2.629943e-03	k: 1372	n:550000
Cons ci ratio: 2.396524e-03	ci left: 8.284889e-01	ci right 8.304785e-01	k: 456217	n:550000
KS ci ratio: 1.718219e-01	ci left: 8.642217e-04	ci right 1.028381e-03	k: 519	n:550000
LOXL2   550000 perm   264 sec   (2086 perm/sec)   p_kst 9.436364e-04   p_cons 8.294855e-01   p_joint 2.494545e-03

Joint ci ratio: 1.057389e-01	ci left: 2.318729e-03	ci right 2.579318e-03	k: 1370	n:560000
Cons ci ratio: 2.374668e-03	ci left: 8.285411e-01	ci right 8.305127e-01	k: 464536	n:560000
KS ci ratio: 1.701932e-01	ci left: 8.658821e-04	ci right 1.028638e-03	k: 529	n:560000
LOXL2   560000 perm   271 sec   (2068 perm/sec)   p_kst 9.446429e-04   p_cons 8.295286e-01   p_joint 2.446429e-03

Joint ci ratio: 1.049386e-01	ci left: 2.313921e-03	ci right 2.571879e-03	k: 1391	n:570000
Cons ci ratio: 2.355019e-03	ci left: 8.283963e-01	ci right 8.303512e-01	k: 472744	n:570000
KS ci ratio: 1.690806e-01	ci left: 8.624504e-04	ci right 1.023393e-03	k: 536	n:570000
LOXL2   570000 perm   278 sec   (2051 perm/sec)   p_kst 9.403509e-04   p_cons 8.293754e-01   p_joint 2.440351e-03

Joint ci ratio: 1.050164e-01	ci left: 2.270666e-03	ci right 2.524001e-03	k: 1389	n:580000
Cons ci ratio: 2.335152e-03	ci left: 8.283413e-01	ci right 8.302796e-01	k: 481001	n:580000
KS ci ratio: 1.673748e-01	ci left: 8.657477e-04	ci right 1.025512e-03	k: 547	n:580000
LOXL2   580000 perm   285 sec   (2034 perm/sec)   p_kst 9.431034e-04   p_cons 8.293121e-01   p_joint 2.394828e-03

Joint ci ratio: 1.048298e-01	ci left: 2.240430e-03	ci right 2.489920e-03	k: 1394	n:590000
Cons ci ratio: 2.315487e-03	ci left: 8.283239e-01	ci right 8.302458e-01	k: 489279	n:590000
KS ci ratio: 1.658682e-01	ci left: 8.673165e-04	ci right 1.025785e-03	k: 557	n:590000
LOXL2   590000 perm   293 sec   (2017 perm/sec)   p_kst 9.440678e-04   p_cons 8.292864e-01   p_joint 2.362712e-03

Joint ci ratio: 1.045318e-01	ci left: 2.216072e-03	ci right 2.462106e-03	k: 1402	n:600000
Cons ci ratio: 2.295798e-03	ci left: 8.283706e-01	ci right 8.302762e-01	k: 497595	n:600000
KS ci ratio: 1.638252e-01	ci left: 8.752322e-04	ci right 1.032984e-03	k: 571	n:600000
LOXL2   600000 perm   300 sec   (2001 perm/sec)   p_kst 9.516667e-04   p_cons 8.293250e-01   p_joint 2.336667e-03

Joint ci ratio: 1.044965e-01	ci left: 2.181338e-03	ci right 2.423428e-03	k: 1403	n:610000
Cons ci ratio: 2.277604e-03	ci left: 8.282910e-01	ci right 8.301813e-01	k: 505835	n:610000
KS ci ratio: 1.625514e-01	ci left: 8.750357e-04	ci right 1.031406e-03	k: 580	n:610000
LOXL2   610000 perm   307 sec   (1984 perm/sec)   p_kst 9.508197e-04   p_cons 8.292377e-01   p_joint 2.300000e-03

Joint ci ratio: 1.040537e-01	ci left: 2.165004e-03	ci right 2.404201e-03	k: 1415	n:620000
Cons ci ratio: 2.258343e-03	ci left: 8.284015e-01	ci right 8.302760e-01	k: 514191	n:620000
KS ci ratio: 1.617190e-01	ci left: 8.702068e-04	ci right 1.024840e-03	k: 586	n:620000
LOXL2   620000 perm   315 sec   (1968 perm/sec)   p_kst 9.451613e-04   p_cons 8.293403e-01   p_joint 2.282258e-03

Joint ci ratio: 1.031111e-01	ci left: 2.170840e-03	ci right 2.408377e-03	k: 1441	n:630000
Cons ci ratio: 2.240554e-03	ci left: 8.283829e-01	ci right 8.302426e-01	k: 522468	n:630000
KS ci ratio: 1.607636e-01	ci left: 8.670567e-04	ci right 1.020132e-03	k: 593	n:630000
LOXL2   630000 perm   323 sec   (1951 perm/sec)   p_kst 9.412698e-04   p_cons 8.293143e-01   p_joint 2.287302e-03

Joint ci ratio: 1.036547e-01	ci left: 2.114086e-03	ci right 2.346707e-03	k: 1426	n:640000
Cons ci ratio: 2.223129e-03	ci left: 8.283712e-01	ci right 8.302164e-01	k: 530749	n:640000
KS ci ratio: 1.598249e-01	ci left: 8.640076e-04	ci right 1.015568e-03	k: 600	n:640000
LOXL2   640000 perm   331 sec   (1935 perm/sec)   p_kst 9.375000e-04   p_cons 8.292953e-01   p_joint 2.228125e-03

Joint ci ratio: 1.040592e-01	ci left: 2.065075e-03	ci right 2.293244e-03	k: 1415	n:650000
Cons ci ratio: 2.205518e-03	ci left: 8.284355e-01	ci right 8.302662e-01	k: 539079	n:650000
KS ci ratio: 1.587719e-01	ci left: 8.625322e-04	ci right 1.012742e-03	k: 608	n:650000
LOXL2   650000 perm   339 sec   (1920 perm/sec)   p_kst 9.353846e-04   p_cons 8.293523e-01   p_joint 2.176923e-03

Joint ci ratio: 1.035855e-01	ci left: 2.052971e-03	ci right 2.278707e-03	k: 1428	n:660000
Cons ci ratio: 2.189068e-03	ci left: 8.284007e-01	ci right 8.302176e-01	k: 547345	n:660000
KS ci ratio: 1.579959e-01	ci left: 8.581939e-04	ci right 1.006849e-03	k: 614	n:660000
LOXL2   660000 perm   346 sec   (1905 perm/sec)   p_kst 9.303030e-04   p_cons 8.293106e-01   p_joint 2.163636e-03

Joint ci ratio: 1.028327e-01	ci left: 2.052864e-03	ci right 2.276849e-03	k: 1449	n:670000
Cons ci ratio: 2.173095e-03	ci left: 8.283520e-01	ci right 8.301556e-01	k: 555601	n:670000
KS ci ratio: 1.569783e-01	ci left: 8.568548e-04	ci right 1.004232e-03	k: 622	n:670000
LOXL2   670000 perm   355 sec   (1890 perm/sec)   p_kst 9.283582e-04   p_cons 8.292552e-01   p_joint 2.162687e-03

Joint ci ratio: 9.629879e-02	ci left: 2.313793e-03	ci right 2.549302e-03	k: 1652	n:680000
Cons ci ratio: 2.157198e-03	ci left: 8.283402e-01	ci right 8.301305e-01	k: 563881	n:680000
KS ci ratio: 1.554877e-01	ci left: 8.612113e-04	ci right 1.007800e-03	k: 634	n:680000
LOXL2   680000 perm   363 sec   (1875 perm/sec)   p_kst 9.323529e-04   p_cons 8.292368e-01   p_joint 2.429412e-03

Joint ci ratio: 9.703884e-02	ci left: 2.244900e-03	ci right 2.475252e-03	k: 1627	n:690000
Cons ci ratio: 2.141590e-03	ci left: 8.283361e-01	ci right 8.301133e-01	k: 572166	n:690000
KS ci ratio: 1.547586e-01	ci left: 8.570879e-04	ci right 1.002227e-03	k: 640	n:690000
LOXL2   690000 perm   371 sec   (1861 perm/sec)   p_kst 9.275362e-04   p_cons 8.292261e-01   p_joint 2.357971e-03

Joint ci ratio: 9.258628e-02	ci left: 2.435995e-03	ci right 2.673866e-03	k: 1787	n:700000
Cons ci ratio: 2.126058e-03	ci left: 8.283664e-01	ci right 8.301309e-01	k: 580475	n:700000
KS ci ratio: 1.571077e-01	ci left: 8.187587e-04	ci right 9.597102e-04	k: 621	n:700000
LOXL2   700000 perm   379 sec   (1847 perm/sec)   p_kst 8.871429e-04   p_cons 8.292500e-01   p_joint 2.552857e-03

Joint ci ratio: 9.212422e-02	ci left: 2.426451e-03	ci right 2.662144e-03	k: 1805	n:710000
Cons ci ratio: 2.111395e-03	ci left: 8.283240e-01	ci right 8.300761e-01	k: 588733	n:710000
KS ci ratio: 1.556135e-01	ci left: 8.234672e-04	ci right 9.637551e-04	k: 633	n:710000
LOXL2   710000 perm   387 sec   (1833 perm/sec)   p_kst 8.915493e-04   p_cons 8.292014e-01   p_joint 2.542254e-03

Joint ci ratio: 9.246006e-02	ci left: 2.375109e-03	ci right 2.606701e-03	k: 1792	n:720000
Cons ci ratio: 2.096250e-03	ci left: 8.283886e-01	ci right 8.301282e-01	k: 597067	n:720000
KS ci ratio: 1.553693e-01	ci left: 8.146995e-04	ci right 9.532558e-04	k: 635	n:720000
LOXL2   720000 perm   396 sec   (1820 perm/sec)   p_kst 8.819444e-04   p_cons 8.292597e-01   p_joint 2.488889e-03

Joint ci ratio: 9.243581e-02	ci left: 2.343909e-03	ci right 2.572396e-03	k: 1793	n:730000
Cons ci ratio: 2.082442e-03	ci left: 8.283128e-01	ci right 8.300408e-01	k: 605300	n:730000
KS ci ratio: 1.542815e-01	ci left: 8.153904e-04	ci right 9.530035e-04	k: 644	n:730000
LOXL2   730000 perm   404 sec   (1806 perm/sec)   p_kst 8.821918e-04   p_cons 8.291781e-01   p_joint 2.456164e-03

Joint ci ratio: 9.187436e-02	ci left: 2.341279e-03	ci right 2.568049e-03	k: 1815	n:740000
Cons ci ratio: 2.067404e-03	ci left: 8.284449e-01	ci right 8.301607e-01	k: 613685	n:740000
KS ci ratio: 1.532163e-01	ci left: 8.160659e-04	ci right 9.527547e-04	k: 653	n:740000
LOXL2   740000 perm   413 sec   (1793 perm/sec)   p_kst 8.824324e-04   p_cons 8.293041e-01   p_joint 2.452703e-03

Joint ci ratio: 9.177460e-02	ci left: 2.315272e-03	ci right 2.539266e-03	k: 1819	n:750000
Cons ci ratio: 2.053585e-03	ci left: 8.284492e-01	ci right 8.301536e-01	k: 621977	n:750000
KS ci ratio: 1.516017e-01	ci left: 8.231401e-04	ci right 9.594291e-04	k: 667	n:750000
LOXL2   750000 perm   421 sec   (1780 perm/sec)   p_kst 8.893333e-04   p_cons 8.293027e-01   p_joint 2.425333e-03

Joint ci ratio: 9.298743e-02	ci left: 2.224389e-03	ci right 2.442590e-03	k: 1772	n:760000
Cons ci ratio: 2.040277e-03	ci left: 8.284206e-01	ci right 8.301138e-01	k: 630244	n:760000
KS ci ratio: 1.508138e-01	ci left: 8.211712e-04	ci right 9.563638e-04	k: 674	n:760000
LOXL2   760000 perm   430 sec   (1766 perm/sec)   p_kst 8.868421e-04   p_cons 8.292684e-01   p_joint 2.331579e-03

Joint ci ratio: 9.651753e-02	ci left: 2.034463e-03	ci right 2.242038e-03	k: 1645	n:770000
Cons ci ratio: 2.026805e-03	ci left: 8.284512e-01	ci right 8.301333e-01	k: 638556	n:770000
KS ci ratio: 1.532189e-01	ci left: 7.842701e-04	ci right 9.156357e-04	k: 653	n:770000
LOXL2   770000 perm   439 sec   (1753 perm/sec)   p_kst 8.480519e-04   p_cons 8.292935e-01   p_joint 2.136364e-03

Joint ci ratio: 9.684367e-02	ci left: 1.994617e-03	ci right 2.198852e-03	k: 1634	n:780000
Cons ci ratio: 2.013944e-03	ci left: 8.284323e-01	ci right 8.301037e-01	k: 646830	n:780000
KS ci ratio: 1.522904e-01	ci left: 7.840798e-04	ci right 9.145449e-04	k: 661	n:780000
LOXL2   780000 perm   448 sec   (1740 perm/sec)   p_kst 8.474359e-04   p_cons 8.292692e-01   p_joint 2.094872e-03

Joint ci ratio: 9.628595e-02	ci left: 1.992838e-03	ci right 2.195650e-03	k: 1653	n:790000
Cons ci ratio: 2.001816e-03	ci left: 8.283442e-01	ci right 8.300053e-01	k: 655049	n:790000
KS ci ratio: 1.513785e-01	ci left: 7.838965e-04	ci right 9.134794e-04	k: 669	n:790000
LOXL2   790000 perm   457 sec   (1728 perm/sec)   p_kst 8.468354e-04   p_cons 8.291759e-01   p_joint 2.092405e-03

Joint ci ratio: 9.565185e-02	ci left: 1.994768e-03	ci right 2.196364e-03	k: 1675	n:800000
Cons ci ratio: 1.988631e-03	ci left: 8.284399e-01	ci right 8.300902e-01	k: 663413	n:800000
KS ci ratio: 1.503718e-01	ci left: 7.849232e-04	ci right 9.137353e-04	k: 678	n:800000
LOXL2   800000 perm   466 sec   (1716 perm/sec)   p_kst 8.475000e-04   p_cons 8.292662e-01   p_joint 2.093750e-03

Joint ci ratio: 9.491815e-02	ci left: 2.001475e-03	ci right 2.202112e-03	k: 1701	n:810000
Cons ci ratio: 1.976237e-03	ci left: 8.284566e-01	ci right 8.300966e-01	k: 671715	n:810000
KS ci ratio: 1.489523e-01	ci left: 7.906813e-04	ci right 9.191044e-04	k: 691	n:810000
LOXL2   810000 perm   476 sec   (1703 perm/sec)   p_kst 8.530864e-04   p_cons 8.292778e-01   p_joint 2.100000e-03

Joint ci ratio: 9.436539e-02	ci left: 2.000880e-03	ci right 2.200224e-03	k: 1721	n:820000
Cons ci ratio: 1.963674e-03	ci left: 8.285303e-01	ci right 8.301601e-01	k: 680064	n:820000
KS ci ratio: 1.479930e-01	ci left: 7.916068e-04	ci right 9.192788e-04	k: 700	n:820000
LOXL2   820000 perm   485 sec   (1691 perm/sec)   p_kst 8.536585e-04   p_cons 8.293463e-01   p_joint 2.098780e-03

Joint ci ratio: 9.363384e-02	ci left: 2.008539e-03	ci right 2.207010e-03	k: 1748	n:830000
Cons ci ratio: 1.952079e-03	ci left: 8.284961e-01	ci right 8.301161e-01	k: 688325	n:830000
KS ci ratio: 1.462297e-01	ci left: 8.017977e-04	ci right 9.294381e-04	k: 717	n:830000
LOXL2   830000 perm   494 sec   (1679 perm/sec)   p_kst 8.638554e-04   p_cons 8.293072e-01   p_joint 2.106024e-03

Joint ci ratio: 9.492172e-02	ci left: 1.929991e-03	ci right 2.123469e-03	k: 1701	n:840000
Cons ci ratio: 1.940449e-03	ci left: 8.284972e-01	ci right 8.301076e-01	k: 696615	n:840000
KS ci ratio: 1.458245e-01	ci left: 7.968402e-04	ci right 9.233093e-04	k: 721	n:840000
LOXL2   840000 perm   504 sec   (1667 perm/sec)   p_kst 8.583333e-04   p_cons 8.293036e-01   p_joint 2.025000e-03

Joint ci ratio: 9.453407e-02	ci left: 1.923365e-03	ci right 2.115348e-03	k: 1715	n:850000
Cons ci ratio: 1.929410e-03	ci left: 8.284419e-01	ci right 8.300430e-01	k: 704857	n:850000
KS ci ratio: 1.447260e-01	ci left: 7.999365e-04	ci right 9.258579e-04	k: 732	n:850000
LOXL2   850000 perm   513 sec   (1656 perm/sec)   p_kst 8.611765e-04   p_cons 8.292435e-01   p_joint 2.017647e-03

Joint ci ratio: 9.401509e-02	ci left: 1.922573e-03	ci right 2.113365e-03	k: 1734	n:860000
Cons ci ratio: 1.918620e-03	ci left: 8.283785e-01	ci right 8.299705e-01	k: 713091	n:860000
KS ci ratio: 1.438455e-01	ci left: 8.007223e-04	ci right 9.259348e-04	k: 741	n:860000
LOXL2   860000 perm   524 sec   (1642 perm/sec)   p_kst 8.616279e-04   p_cons 8.291756e-01   p_joint 2.016279e-03

Joint ci ratio: 9.345119e-02	ci left: 1.924046e-03	ci right 2.113777e-03	k: 1755	n:870000
Cons ci ratio: 1.907389e-03	ci left: 8.284087e-01	ci right 8.299914e-01	k: 721405	n:870000
KS ci ratio: 1.430764e-01	ci left: 8.003839e-04	ci right 9.248171e-04	k: 749	n:870000
LOXL2   870000 perm   534 sec   (1630 perm/sec)   p_kst 8.609195e-04   p_cons 8.292011e-01   p_joint 2.017241e-03

Joint ci ratio: 9.316034e-02	ci left: 1.914390e-03	ci right 2.102549e-03	k: 1766	n:880000
Cons ci ratio: 1.896468e-03	ci left: 8.284212e-01	ci right 8.299948e-01	k: 729704	n:880000
KS ci ratio: 1.426021e-01	ci left: 7.967673e-04	ci right 9.201927e-04	k: 754	n:880000
LOXL2   880000 perm   544 sec   (1619 perm/sec)   p_kst 8.568182e-04   p_cons 8.292091e-01   p_joint 2.006818e-03

Joint ci ratio: 9.369420e-02	ci left: 1.870931e-03	ci right 2.055930e-03	k: 1746	n:890000
Cons ci ratio: 1.885231e-03	ci left: 8.285088e-01	ci right 8.300733e-01	k: 738070	n:890000
KS ci ratio: 1.417597e-01	ci left: 7.975675e-04	ci right 9.203253e-04	k: 763	n:890000
LOXL2   890000 perm   554 sec   (1607 perm/sec)   p_kst 8.573034e-04   p_cons 8.292921e-01   p_joint 1.961798e-03

Joint ci ratio: 9.292561e-02	ci left: 1.881614e-03	ci right 2.066060e-03	k: 1775	n:900000
Cons ci ratio: 1.874624e-03	ci left: 8.285289e-01	ci right 8.300846e-01	k: 746377	n:900000
KS ci ratio: 1.404780e-01	ci left: 8.037122e-04	ci right 9.262036e-04	k: 777	n:900000
LOXL2   900000 perm   564 sec   (1597 perm/sec)   p_kst 8.633333e-04   p_cons 8.293078e-01   p_joint 1.972222e-03

Joint ci ratio: 9.251002e-02	ci left: 1.878111e-03	ci right 2.061346e-03	k: 1791	n:910000
Cons ci ratio: 1.864861e-03	ci left: 8.284472e-01	ci right 8.299947e-01	k: 754592	n:910000
KS ci ratio: 1.394951e-01	ci left: 8.065448e-04	ci right 9.285365e-04	k: 788	n:910000
LOXL2   910000 perm   574 sec   (1586 perm/sec)   p_kst 8.659341e-04   p_cons 8.292220e-01   p_joint 1.968132e-03

Joint ci ratio: 9.182051e-02	ci left: 1.886369e-03	ci right 2.068964e-03	k: 1818	n:920000
Cons ci ratio: 1.854429e-03	ci left: 8.284926e-01	ci right 8.300314e-01	k: 762922	n:920000
KS ci ratio: 1.389679e-01	ci left: 8.040725e-04	ci right 9.251925e-04	k: 794	n:920000
LOXL2   920000 perm   584 sec   (1576 perm/sec)   p_kst 8.630435e-04   p_cons 8.292630e-01   p_joint 1.976087e-03

Joint ci ratio: 9.167013e-02	ci left: 1.872388e-03	ci right 2.053317e-03	k: 1824	n:930000
Cons ci ratio: 1.844548e-03	ci left: 8.284788e-01	ci right 8.300094e-01	k: 771198	n:930000
KS ci ratio: 1.379306e-01	ci left: 8.078830e-04	ci right 9.285940e-04	k: 806	n:930000
LOXL2   930000 perm   594 sec   (1566 perm/sec)   p_kst 8.666667e-04   p_cons 8.292452e-01   p_joint 1.961290e-03

Joint ci ratio: 9.159569e-02	ci left: 1.855587e-03	ci right 2.034739e-03	k: 1827	n:940000
Cons ci ratio: 1.834376e-03	ci left: 8.285347e-01	ci right 8.300569e-01	k: 779539	n:940000
KS ci ratio: 1.377605e-01	ci left: 8.013426e-04	ci right 9.209166e-04	k: 808	n:940000
LOXL2   940000 perm   604 sec   (1555 perm/sec)   p_kst 8.595745e-04   p_cons 8.292968e-01   p_joint 1.943617e-03

Joint ci ratio: 9.380767e-02	ci left: 1.748650e-03	ci right 1.921778e-03	k: 1742	n:950000
Cons ci ratio: 1.824791e-03	ci left: 8.285240e-01	ci right 8.300382e-01	k: 787818	n:950000
KS ci ratio: 1.368332e-01	ci left: 8.040887e-04	ci right 9.231990e-04	k: 819	n:950000
LOXL2   950000 perm   615 sec   (1546 perm/sec)   p_kst 8.621053e-04   p_cons 8.292821e-01   p_joint 1.833684e-03

Joint ci ratio: 9.375470e-02	ci left: 1.732469e-03	ci right 1.903893e-03	k: 1744	n:960000
Cons ci ratio: 1.815107e-03	ci left: 8.285521e-01	ci right 8.300584e-01	k: 796134	n:960000
KS ci ratio: 1.364182e-01	ci left: 8.007430e-04	ci right 9.189687e-04	k: 824	n:960000
LOXL2   960000 perm   625 sec   (1536 perm/sec)   p_kst 8.583333e-04   p_cons 8.293063e-01   p_joint 1.816667e-03

Joint ci ratio: 9.335448e-02	ci left: 1.729710e-03	ci right 1.900091e-03	k: 1759	n:970000
Cons ci ratio: 1.805661e-03	ci left: 8.285663e-01	ci right 8.300647e-01	k: 804437	n:970000
KS ci ratio: 1.357615e-01	ci left: 8.004545e-04	ci right 9.180229e-04	k: 832	n:970000
LOXL2   970000 perm   635 sec   (1526 perm/sec)   p_kst 8.577320e-04   p_cons 8.293165e-01   p_joint 1.813402e-03

Joint ci ratio: 9.311713e-02	ci left: 1.721029e-03	ci right 1.890100e-03	k: 1768	n:980000
Cons ci ratio: 1.796762e-03	ci left: 8.285168e-01	ci right 8.300078e-01	k: 812678	n:980000
KS ci ratio: 1.353562e-01	ci left: 7.972155e-04	ci right 9.139304e-04	k: 837	n:980000
LOXL2   980000 perm   646 sec   (1517 perm/sec)   p_kst 8.540816e-04   p_cons 8.292633e-01   p_joint 1.804082e-03

Joint ci ratio: 9.327659e-02	ci left: 1.697725e-03	ci right 1.864808e-03	k: 1762	n:990000
Cons ci ratio: 1.787790e-03	ci left: 8.285007e-01	ci right 8.299842e-01	k: 820951	n:990000
KS ci ratio: 1.344763e-01	ci left: 7.998990e-04	ci right 9.161846e-04	k: 848	n:990000
LOXL2   990000 perm   657 sec   (1507 perm/sec)   p_kst 8.565657e-04   p_cons 8.292434e-01   p_joint 1.779798e-03

Joint ci ratio: 9.365066e-02	ci left: 1.667074e-03	ci right 1.831834e-03	k: 1748	n:1000000
Cons ci ratio: 1.778988e-03	ci left: 8.284790e-01	ci right 8.299551e-01	k: 829218	n:1000000
KS ci ratio: 1.338472e-01	ci left: 7.996315e-04	ci right 9.152911e-04	k: 856	n:1000000
LOXL2   1000000 perm   668 sec   (1498 perm/sec)   p_kst 8.560000e-04   p_cons 8.292180e-01   p_joint 1.748000e-03

Joint ci ratio: 9.327824e-02	ci left: 1.664105e-03	ci right 1.827882e-03	k: 1762	n:1010000
Cons ci ratio: 1.770049e-03	ci left: 8.285003e-01	ci right 8.299691e-01	k: 837528	n:1010000
KS ci ratio: 1.333040e-01	ci left: 7.984134e-04	ci right 9.133911e-04	k: 863	n:1010000
LOXL2   1010000 perm   679 sec   (1488 perm/sec)   p_kst 8.544554e-04   p_cons 8.292356e-01   p_joint 1.744554e-03

Joint ci ratio: 9.283176e-02	ci left: 1.664069e-03	ci right 1.827016e-03	k: 1779	n:1020000
Cons ci ratio: 1.761000e-03	ci left: 8.285606e-01	ci right 8.300219e-01	k: 845878	n:1020000
KS ci ratio: 1.328437e-01	ci left: 7.962723e-04	ci right 9.105144e-04	k: 869	n:1020000
LOXL2   1020000 perm   690 sec   (1479 perm/sec)   p_kst 8.519608e-04   p_cons 8.292922e-01   p_joint 1.744118e-03

Joint ci ratio: 9.244318e-02	ci left: 1.662139e-03	ci right 1.824179e-03	k: 1794	n:1030000
Cons ci ratio: 1.752111e-03	ci left: 8.286157e-01	ci right 8.300698e-01	k: 854224	n:1030000
KS ci ratio: 1.324638e-01	ci left: 7.932347e-04	ci right 9.066899e-04	k: 874	n:1030000
LOXL2   1030000 perm   701 sec   (1470 perm/sec)   p_kst 8.485437e-04   p_cons 8.293437e-01   p_joint 1.741748e-03

Joint ci ratio: 9.198311e-02	ci left: 1.663065e-03	ci right 1.824345e-03	k: 1812	n:1040000
Cons ci ratio: 1.743267e-03	ci left: 8.286843e-01	ci right 8.301311e-01	k: 862585	n:1040000
KS ci ratio: 1.318624e-01	ci left: 7.930454e-04	ci right 9.059182e-04	k: 882	n:1040000
LOXL2   1040000 perm   712 sec   (1460 perm/sec)   p_kst 8.480769e-04   p_cons 8.294087e-01   p_joint 1.742308e-03

Joint ci ratio: 9.147980e-02	ci left: 1.665837e-03	ci right 1.826455e-03	k: 1832	n:1050000
Cons ci ratio: 1.735058e-03	ci left: 8.286696e-01	ci right 8.301095e-01	k: 870860	n:1050000
KS ci ratio: 1.310485e-01	ci left: 7.956243e-04	ci right 9.081109e-04	k: 893	n:1050000
LOXL2   1050000 perm   724 sec   (1451 perm/sec)   p_kst 8.504762e-04   p_cons 8.293905e-01   p_joint 1.744762e-03

Joint ci ratio: 9.103390e-02	ci left: 1.666716e-03	ci right 1.826593e-03	k: 1850	n:1060000
Cons ci ratio: 1.726819e-03	ci left: 8.286788e-01	ci right 8.301119e-01	k: 879160	n:1060000
KS ci ratio: 1.303216e-01	ci left: 7.972440e-04	ci right 9.092860e-04	k: 903	n:1060000
LOXL2   1060000 perm   735 sec   (1442 perm/sec)   p_kst 8.518868e-04   p_cons 8.293962e-01   p_joint 1.745283e-03

Joint ci ratio: 9.042497e-02	ci left: 1.673973e-03	ci right 1.833416e-03	k: 1875	n:1070000
Cons ci ratio: 1.718730e-03	ci left: 8.286822e-01	ci right 8.301086e-01	k: 887454	n:1070000
KS ci ratio: 1.294649e-01	ci left: 8.006438e-04	ci right 9.123670e-04	k: 915	n:1070000
LOXL2   1070000 perm   747 sec   (1433 perm/sec)   p_kst 8.551402e-04   p_cons 8.293963e-01   p_joint 1.752336e-03

Joint ci ratio: 9.011348e-02	ci left: 1.670239e-03	ci right 1.828749e-03	k: 1888	n:1080000
Cons ci ratio: 1.710956e-03	ci left: 8.286521e-01	ci right 8.300720e-01	k: 895712	n:1080000
KS ci ratio: 1.289033e-01	ci left: 8.003984e-04	ci right 9.115659e-04	k: 923	n:1080000
LOXL2   1080000 perm   758 sec   (1424 perm/sec)   p_kst 8.546296e-04   p_cons 8.293630e-01   p_joint 1.748148e-03

Joint ci ratio: 8.420275e-02	ci left: 1.900828e-03	ci right 2.068808e-03	k: 2162	n:1090000
Cons ci ratio: 1.703214e-03	ci left: 8.286346e-01	ci right 8.300480e-01	k: 903983	n:1090000
KS ci ratio: 1.282800e-01	ci left: 8.010466e-04	ci right 9.117252e-04	k: 932	n:1090000
LOXL2   1090000 perm   770 sec   (1416 perm/sec)   p_kst 8.550459e-04   p_cons 8.293422e-01   p_joint 1.983486e-03

Joint ci ratio: 8.385463e-02	ci left: 1.899568e-03	ci right 2.066709e-03	k: 2180	n:1100000
Cons ci ratio: 1.695414e-03	ci left: 8.286447e-01	ci right 8.300517e-01	k: 912284	n:1100000
KS ci ratio: 1.275980e-01	ci left: 8.025644e-04	ci right 9.128184e-04	k: 942	n:1100000
LOXL2   1100000 perm   782 sec   (1408 perm/sec)   p_kst 8.563636e-04   p_cons 8.293491e-01   p_joint 1.981818e-03

Joint ci ratio: 8.366342e-02	ci left: 1.891274e-03	ci right 2.057288e-03	k: 2190	n:1110000
Cons ci ratio: 1.687826e-03	ci left: 8.286367e-01	ci right 8.300373e-01	k: 920565	n:1110000
KS ci ratio: 1.267936e-01	ci left: 8.058010e-04	ci right 9.157494e-04	k: 954	n:1110000
LOXL2   1110000 perm   793 sec   (1399 perm/sec)   p_kst 8.594595e-04   p_cons 8.293378e-01   p_joint 1.972973e-03

Joint ci ratio: 8.084749e-02	ci left: 2.009940e-03	ci right 2.180152e-03	k: 2345	n:1120000
Cons ci ratio: 1.679863e-03	ci left: 8.287092e-01	ci right 8.301034e-01	k: 928936	n:1120000
KS ci ratio: 1.261348e-01	ci left: 8.072525e-04	ci right 9.167839e-04	k: 964	n:1120000
LOXL2   1120000 perm   805 sec   (1391 perm/sec)   p_kst 8.607143e-04   p_cons 8.294071e-01   p_joint 2.093750e-03

Joint ci ratio: 8.041999e-02	ci left: 2.013831e-03	ci right 2.183428e-03	k: 2370	n:1130000
Cons ci ratio: 1.672461e-03	ci left: 8.287043e-01	ci right 8.300923e-01	k: 937221	n:1130000
KS ci ratio: 1.254219e-01	ci left: 8.095369e-04	ci right 9.187113e-04	k: 975	n:1130000
LOXL2   1130000 perm   817 sec   (1383 perm/sec)   p_kst 8.628319e-04   p_cons 8.293991e-01   p_joint 2.097345e-03

Joint ci ratio: 7.994905e-02	ci left: 2.020235e-03	ci right 2.189329e-03	k: 2398	n:1140000
Cons ci ratio: 1.665058e-03	ci left: 8.287161e-01	ci right 8.300980e-01	k: 945525	n:1140000
KS ci ratio: 1.247209e-01	ci left: 8.117830e-04	ci right 9.206032e-04	k: 986	n:1140000
LOXL2   1140000 perm   829 sec   (1374 perm/sec)   p_kst 8.649123e-04   p_cons 8.294079e-01   p_joint 2.103509e-03

Joint ci ratio: 7.968394e-02	ci left: 2.016303e-03	ci right 2.184482e-03	k: 2414	n:1150000
Cons ci ratio: 1.657671e-03	ci left: 8.287417e-01	ci right 8.301175e-01	k: 953845	n:1150000
KS ci ratio: 1.239694e-01	ci left: 8.148343e-04	ci right 9.233571e-04	k: 998	n:1150000
LOXL2   1150000 perm   841 sec   (1367 perm/sec)   p_kst 8.678261e-04   p_cons 8.294304e-01   p_joint 2.099130e-03

Joint ci ratio: 7.943783e-02	ci left: 2.011594e-03	ci right 2.178839e-03	k: 2429	n:1160000
Cons ci ratio: 1.650386e-03	ci left: 8.287660e-01	ci right 8.301358e-01	k: 962164	n:1160000
KS ci ratio: 1.234147e-01	ci left: 8.153285e-04	ci right 9.233957e-04	k: 1007	n:1160000
LOXL2   1160000 perm   854 sec   (1358 perm/sec)   p_kst 8.681034e-04   p_cons 8.294517e-01   p_joint 2.093966e-03

Joint ci ratio: 8.071334e-02	ci left: 1.930741e-03	ci right 2.093962e-03	k: 2353	n:1170000
Cons ci ratio: 1.643032e-03	ci left: 8.288182e-01	ci right 8.301819e-01	k: 970516	n:1170000
KS ci ratio: 1.229279e-01	ci left: 8.149868e-04	ci right 9.225516e-04	k: 1015	n:1170000
LOXL2   1170000 perm   867 sec   (1350 perm/sec)   p_kst 8.675214e-04   p_cons 8.295009e-01   p_joint 2.011111e-03

Joint ci ratio: 8.023728e-02	ci left: 1.937631e-03	ci right 2.100422e-03	k: 2381	n:1180000
Cons ci ratio: 1.636051e-03	ci left: 8.288219e-01	ci right 8.301798e-01	k: 978812	n:1180000
KS ci ratio: 1.222677e-01	ci left: 8.171163e-04	ci right 9.243411e-04	k: 1026	n:1180000
LOXL2   1180000 perm   879 sec   (1343 perm/sec)   p_kst 8.694915e-04   p_cons 8.295017e-01   p_joint 2.017797e-03

Joint ci ratio: 8.039028e-02	ci left: 1.913936e-03	ci right 2.075058e-03	k: 2372	n:1190000
Cons ci ratio: 1.629138e-03	ci left: 8.288290e-01	ci right 8.301812e-01	k: 987112	n:1190000
KS ci ratio: 1.217942e-01	ci left: 8.167673e-04	ci right 9.235013e-04	k: 1034	n:1190000
LOXL2   1190000 perm   891 sec   (1335 perm/sec)   p_kst 8.689076e-04   p_cons 8.295059e-01   p_joint 1.993277e-03

Joint ci ratio: 8.008718e-02	ci left: 1.912685e-03	ci right 2.073067e-03	k: 2390	n:1200000
Cons ci ratio: 1.622154e-03	ci left: 8.288635e-01	ci right 8.302099e-01	k: 995445	n:1200000
KS ci ratio: 1.213845e-01	ci left: 8.156167e-04	ci right 9.218162e-04	k: 1041	n:1200000
LOXL2   1200000 perm   904 sec   (1328 perm/sec)   p_kst 8.675000e-04   p_cons 8.295375e-01   p_joint 1.991667e-03

Joint ci ratio: 7.973774e-02	ci left: 1.913887e-03	ci right 2.073636e-03	k: 2411	n:1210000
Cons ci ratio: 1.615576e-03	ci left: 8.288420e-01	ci right 8.301829e-01	k: 1003711	n:1210000
KS ci ratio: 1.208637e-01	ci left: 8.160888e-04	ci right 9.218611e-04	k: 1050	n:1210000
LOXL2   1210000 perm   916 sec   (1321 perm/sec)   p_kst 8.677686e-04   p_cons 8.295132e-01   p_joint 1.992562e-03

Joint ci ratio: 8.182108e-02	ci left: 1.801018e-03	ci right 1.955461e-03	k: 2290	n:1220000
Cons ci ratio: 1.609068e-03	ci left: 8.288225e-01	ci right 8.301580e-01	k: 1011979	n:1220000
KS ci ratio: 1.202360e-01	ci left: 8.181441e-04	ci right 9.235929e-04	k: 1061	n:1220000
LOXL2   1220000 perm   929 sec   (1313 perm/sec)   p_kst 8.696721e-04   p_cons 8.294910e-01   p_joint 1.877049e-03

Joint ci ratio: 8.150156e-02	ci left: 1.800710e-03	ci right 1.954496e-03	k: 2308	n:1230000
Cons ci ratio: 1.602227e-03	ci left: 8.288757e-01	ci right 8.302056e-01	k: 1020336	n:1230000
KS ci ratio: 1.197297e-01	ci left: 8.185900e-04	ci right 9.236206e-04	k: 1070	n:1230000
LOXL2   1230000 perm   942 sec   (1306 perm/sec)   p_kst 8.699187e-04   p_cons 8.295415e-01   p_joint 1.876423e-03

Joint ci ratio: 8.123823e-02	ci left: 1.798039e-03	ci right 1.951077e-03	k: 2323	n:1240000
Cons ci ratio: 1.595737e-03	ci left: 8.288813e-01	ci right 8.302058e-01	k: 1028635	n:1240000
KS ci ratio: 1.193959e-01	ci left: 8.166824e-04	ci right 9.211555e-04	k: 1076	n:1240000
LOXL2   1240000 perm   955 sec   (1298 perm/sec)   p_kst 8.677419e-04   p_cons 8.295444e-01   p_joint 1.873387e-03

Joint ci ratio: 8.102952e-02	ci left: 1.793060e-03	ci right 1.945263e-03	k: 2335	n:1250000
Cons ci ratio: 1.589015e-03	ci left: 8.289421e-01	ci right 8.302611e-01	k: 1037003	n:1250000
KS ci ratio: 1.187361e-01	ci left: 8.194631e-04	ci right 9.236719e-04	k: 1088	n:1250000
LOXL2   1250000 perm   968 sec   (1291 perm/sec)   p_kst 8.704000e-04   p_cons 8.296024e-01   p_joint 1.868000e-03

Joint ci ratio: 7.843225e-02	ci left: 1.900953e-03	ci right 2.056906e-03	k: 2492	n:1260000
Cons ci ratio: 1.582657e-03	ci left: 8.289519e-01	ci right 8.302656e-01	k: 1045308	n:1260000
KS ci ratio: 1.165090e-01	ci left: 8.453128e-04	ci right 9.506540e-04	k: 1130	n:1260000
LOXL2   1260000 perm   981 sec   (1284 perm/sec)   p_kst 8.968254e-04   p_cons 8.296095e-01   p_joint 1.977778e-03

Joint ci ratio: 7.811952e-02	ci left: 1.901424e-03	ci right 2.056766e-03	k: 2512	n:1270000
Cons ci ratio: 1.576656e-03	ci left: 8.289110e-01	ci right 8.302197e-01	k: 1053549	n:1270000
KS ci ratio: 1.159973e-01	ci left: 8.463019e-04	ci right 9.512713e-04	k: 1140	n:1270000
LOXL2   1270000 perm   994 sec   (1277 perm/sec)   p_kst 8.976378e-04   p_cons 8.295661e-01   p_joint 1.977953e-03

Joint ci ratio: 8.022676e-02	ci left: 1.787013e-03	ci right 1.937130e-03	k: 2382	n:1280000
Cons ci ratio: 1.570431e-03	ci left: 8.289233e-01	ci right 8.302268e-01	k: 1061857	n:1280000
KS ci ratio: 1.154923e-01	ci left: 8.472765e-04	ci right 9.518781e-04	k: 1150	n:1280000
LOXL2   1280000 perm   1008 sec   (1270 perm/sec)   p_kst 8.984375e-04   p_cons 8.295758e-01   p_joint 1.860937e-03

Joint ci ratio: 7.990881e-02	ci left: 1.787594e-03	ci right 1.937137e-03	k: 2401	n:1290000
Cons ci ratio: 1.564284e-03	ci left: 8.289345e-01	ci right 8.302330e-01	k: 1070164	n:1290000
KS ci ratio: 1.150434e-01	ci left: 8.474840e-04	ci right 9.516770e-04	k: 1159	n:1290000
LOXL2   1290000 perm   1021 sec   (1264 perm/sec)   p_kst 8.984496e-04   p_cons 8.295845e-01   p_joint 1.861240e-03

Joint ci ratio: 7.956171e-02	ci left: 1.789675e-03	ci right 1.938712e-03	k: 2422	n:1300000
Cons ci ratio: 1.558162e-03	ci left: 8.289541e-01	ci right 8.302475e-01	k: 1078482	n:1300000
KS ci ratio: 1.145506e-01	ci left: 8.484364e-04	ci right 9.522695e-04	k: 1169	n:1300000
LOXL2   1300000 perm   1034 sec   (1257 perm/sec)   p_kst 8.992308e-04   p_cons 8.296015e-01   p_joint 1.863077e-03

Joint ci ratio: 7.925158e-02	ci left: 1.790230e-03	ci right 1.938704e-03	k: 2441	n:1310000
Cons ci ratio: 1.552066e-03	ci left: 8.289818e-01	ci right 8.302702e-01	k: 1086811	n:1310000
KS ci ratio: 1.140642e-01	ci left: 8.493751e-04	ci right 9.528520e-04	k: 1179	n:1310000
LOXL2   1310000 perm   1048 sec   (1250 perm/sec)   p_kst 9.000000e-04   p_cons 8.296267e-01   p_joint 1.863359e-03

Joint ci ratio: 7.888085e-02	ci left: 1.793747e-03	ci right 1.941786e-03	k: 2464	n:1320000
Cons ci ratio: 1.546214e-03	ci left: 8.289772e-01	ci right 8.302607e-01	k: 1095098	n:1320000
KS ci ratio: 1.135361e-01	ci left: 8.510366e-04	ci right 9.542038e-04	k: 1190	n:1320000
LOXL2   1320000 perm   1061 sec   (1244 perm/sec)   p_kst 9.015152e-04   p_cons 8.296197e-01   p_joint 1.866667e-03

Joint ci ratio: 7.846789e-02	ci left: 1.799425e-03	ci right 1.947119e-03	k: 2490	n:1330000
Cons ci ratio: 1.540145e-03	ci left: 8.290247e-01	ci right 8.303032e-01	k: 1103454	n:1330000
KS ci ratio: 1.129213e-01	ci left: 8.541356e-04	ci right 9.570804e-04	k: 1203	n:1330000
LOXL2   1330000 perm   1075 sec   (1237 perm/sec)   p_kst 9.045113e-04   p_cons 8.296647e-01   p_joint 1.872180e-03

Joint ci ratio: 7.826410e-02	ci left: 1.795507e-03	ci right 1.942480e-03	k: 2503	n:1340000
Cons ci ratio: 1.534479e-03	ci left: 8.290101e-01	ci right 8.302839e-01	k: 1111728	n:1340000
KS ci ratio: 1.126878e-01	ci left: 8.513874e-04	ci right 9.537746e-04	k: 1208	n:1340000
LOXL2   1340000 perm   1088 sec   (1231 perm/sec)   p_kst 9.014925e-04   p_cons 8.296478e-01   p_joint 1.867910e-03

Joint ci ratio: 7.902715e-02	ci left: 1.747349e-03	ci right 1.891838e-03	k: 2455	n:1350000
Cons ci ratio: 1.528759e-03	ci left: 8.290174e-01	ci right 8.302864e-01	k: 1120031	n:1350000
KS ci ratio: 1.120866e-01	ci left: 8.544399e-04	ci right 9.566097e-04	k: 1221	n:1350000
LOXL2   1350000 perm   1102 sec   (1225 perm/sec)   p_kst 9.044444e-04   p_cons 8.296526e-01   p_joint 1.818519e-03

Joint ci ratio: 7.872321e-02	ci left: 1.748196e-03	ci right 1.892174e-03	k: 2474	n:1360000
Cons ci ratio: 1.523035e-03	ci left: 8.290370e-01	ci right 8.303013e-01	k: 1128351	n:1360000
KS ci ratio: 1.116307e-01	ci left: 8.553044e-04	ci right 9.571344e-04	k: 1231	n:1360000
LOXL2   1360000 perm   1116 sec   (1218 perm/sec)   p_kst 9.051471e-04   p_cons 8.296699e-01   p_joint 1.819118e-03

Joint ci ratio: 7.872373e-02	ci left: 1.735435e-03	ci right 1.878363e-03	k: 2474	n:1370000
Cons ci ratio: 1.517532e-03	ci left: 8.290271e-01	ci right 8.302868e-01	k: 1136631	n:1370000
KS ci ratio: 1.114953e-01	ci left: 8.511899e-04	ci right 9.523990e-04	k: 1234	n:1370000
LOXL2   1370000 perm   1130 sec   (1212 perm/sec)   p_kst 9.007299e-04   p_cons 8.296577e-01   p_joint 1.805839e-03

Joint ci ratio: 7.893219e-02	ci left: 1.713624e-03	ci right 1.855146e-03	k: 2461	n:1380000
Cons ci ratio: 1.545708e-03	ci left: 8.227018e-01	ci right 8.239751e-01	k: 1136208	n:1380000
KS ci ratio: 1.111360e-01	ci left: 8.506576e-04	ci right 9.514560e-04	k: 1242	n:1380000
LOXL2   1380000 perm   1145 sec   (1206 perm/sec)   p_kst 9.000000e-04   p_cons 8.233391e-01   p_joint 1.783333e-03

Joint ci ratio: 7.463668e-02	ci left: 1.906639e-03	ci right 2.055161e-03	k: 2752	n:1390000
Cons ci ratio: 1.540254e-03	ci left: 8.226822e-01	ci right 8.239510e-01	k: 1144411	n:1390000
KS ci ratio: 1.108244e-01	ci left: 8.494339e-04	ci right 9.497868e-04	k: 1249	n:1390000
LOXL2   1390000 perm   1159 sec   (1200 perm/sec)   p_kst 8.985612e-04   p_cons 8.233173e-01   p_joint 1.979856e-03

Joint ci ratio: 7.092595e-02	ci left: 2.099909e-03	ci right 2.255019e-03	k: 3047	n:1400000
Cons ci ratio: 1.534785e-03	ci left: 8.226765e-01	ci right 8.239408e-01	k: 1152633	n:1400000
KS ci ratio: 1.103837e-01	ci left: 8.503118e-04	ci right 9.503429e-04	k: 1259	n:1400000
LOXL2   1400000 perm   1173 sec   (1194 perm/sec)   p_kst 8.992857e-04   p_cons 8.233093e-01   p_joint 2.176429e-03

Joint ci ratio: 7.065982e-02	ci left: 2.101039e-03	ci right 2.255627e-03	k: 3070	n:1410000
Cons ci ratio: 1.529460e-03	ci left: 8.226545e-01	ci right 8.239144e-01	k: 1160832	n:1410000
KS ci ratio: 1.100350e-01	ci left: 8.497985e-04	ci right 9.494330e-04	k: 1267	n:1410000
LOXL2   1410000 perm   1187 sec   (1188 perm/sec)   p_kst 8.985816e-04   p_cons 8.232851e-01   p_joint 2.177305e-03

Joint ci ratio: 7.036249e-02	ci left: 2.104230e-03	ci right 2.258375e-03	k: 3096	n:1420000
Cons ci ratio: 1.524293e-03	ci left: 8.226131e-01	ci right 8.238687e-01	k: 1169003	n:1420000
KS ci ratio: 1.096896e-01	ci left: 8.492930e-04	ci right 9.485354e-04	k: 1275	n:1420000
LOXL2   1420000 perm   1201 sec   (1182 perm/sec)   p_kst 8.978873e-04   p_cons 8.232415e-01   p_joint 2.180282e-03

Joint ci ratio: 7.011389e-02	ci left: 2.104630e-03	ci right 2.258237e-03	k: 3118	n:1430000
Cons ci ratio: 1.519043e-03	ci left: 8.225982e-01	ci right 8.238494e-01	k: 1177211	n:1430000
KS ci ratio: 1.093474e-01	ci left: 8.487951e-04	ci right 9.476499e-04	k: 1283	n:1430000
LOXL2   1430000 perm   1216 sec   (1176 perm/sec)   p_kst 8.972028e-04   p_cons 8.232245e-01   p_joint 2.180420e-03

Joint ci ratio: 7.103327e-02	ci left: 2.035437e-03	ci right 2.186021e-03	k: 3038	n:1440000
Cons ci ratio: 1.513952e-03	ci left: 8.225634e-01	ci right 8.238103e-01	k: 1185390	n:1440000
KS ci ratio: 1.090083e-01	ci left: 8.483045e-04	ci right 9.467762e-04	k: 1291	n:1440000
LOXL2   1440000 perm   1231 sec   (1170 perm/sec)   p_kst 8.965278e-04   p_cons 8.231875e-01   p_joint 2.109722e-03

Joint ci ratio: 7.077752e-02	ci left: 2.036303e-03	ci right 2.186387e-03	k: 3060	n:1450000
Cons ci ratio: 1.508593e-03	ci left: 8.225905e-01	ci right 8.238330e-01	k: 1193658	n:1450000
KS ci ratio: 1.085889e-01	ci left: 8.491630e-04	ci right 9.473309e-04	k: 1301	n:1450000
LOXL2   1450000 perm   1245 sec   (1164 perm/sec)   p_kst 8.972414e-04   p_cons 8.232124e-01   p_joint 2.110345e-03

Joint ci ratio: 7.054745e-02	ci left: 2.035812e-03	ci right 2.185352e-03	k: 3080	n:1460000
Cons ci ratio: 1.503355e-03	ci left: 8.226049e-01	ci right 8.238431e-01	k: 1201908	n:1460000
KS ci ratio: 1.083811e-01	ci left: 8.466785e-04	ci right 9.443599e-04	k: 1306	n:1460000
LOXL2   1460000 perm   1260 sec   (1159 perm/sec)   p_kst 8.945205e-04   p_cons 8.232247e-01   p_joint 2.109589e-03

Joint ci ratio: 7.046779e-02	ci left: 2.026640e-03	ci right 2.175332e-03	k: 3087	n:1470000
Cons ci ratio: 1.498279e-03	ci left: 8.225980e-01	ci right 8.238320e-01	k: 1210127	n:1470000
KS ci ratio: 1.080510e-01	ci left: 8.462137e-04	ci right 9.435251e-04	k: 1314	n:1470000
LOXL2   1470000 perm   1275 sec   (1153 perm/sec)   p_kst 8.938776e-04   p_cons 8.232156e-01   p_joint 2.100000e-03

Joint ci ratio: 7.020677e-02	ci left: 2.028214e-03	ci right 2.176448e-03	k: 3110	n:1480000
Cons ci ratio: 1.493216e-03	ci left: 8.225986e-01	ci right 8.238285e-01	k: 1218357	n:1480000
KS ci ratio: 1.077646e-01	ci left: 8.450981e-04	ci right 9.420073e-04	k: 1321	n:1480000
LOXL2   1480000 perm   1289 sec   (1148 perm/sec)   p_kst 8.925676e-04   p_cons 8.232142e-01   p_joint 2.101351e-03

Joint ci ratio: 6.999340e-02	ci left: 2.027130e-03	ci right 2.174816e-03	k: 3129	n:1490000
Cons ci ratio: 1.488139e-03	ci left: 8.226120e-01	ci right 8.238377e-01	k: 1226606	n:1490000
KS ci ratio: 1.075210e-01	ci left: 8.433446e-04	ci right 9.398204e-04	k: 1327	n:1490000
LOXL2   1490000 perm   1304 sec   (1142 perm/sec)   p_kst 8.906040e-04   p_cons 8.232255e-01   p_joint 2.100000e-03

Joint ci ratio: 7.038937e-02	ci left: 1.990691e-03	ci right 2.136576e-03	k: 3094	n:1500000
Cons ci ratio: 1.483188e-03	ci left: 8.226106e-01	ci right 8.238322e-01	k: 1234833	n:1500000
KS ci ratio: 1.071184e-01	ci left: 8.442101e-04	ci right 9.404004e-04	k: 1337	n:1500000
LOXL2   1500000 perm   1319 sec   (1137 perm/sec)   p_kst 8.913333e-04   p_cons 8.232220e-01   p_joint 2.062667e-03

Joint ci ratio: 7.005047e-02	ci left: 1.997026e-03	ci right 2.142642e-03	k: 3124	n:1510000
Cons ci ratio: 1.478303e-03	ci left: 8.226058e-01	ci right 8.238234e-01	k: 1243055	n:1510000
KS ci ratio: 1.066411e-01	ci left: 8.463539e-04	ci right 9.423320e-04	k: 1349	n:1510000
LOXL2   1510000 perm   1334 sec   (1132 perm/sec)   p_kst 8.933775e-04   p_cons 8.232152e-01   p_joint 2.068874e-03

Joint ci ratio: 7.099043e-02	ci left: 1.930890e-03	ci right 2.073650e-03	k: 3042	n:1520000
Cons ci ratio: 1.473443e-03	ci left: 8.226057e-01	ci right 8.238193e-01	k: 1251284	n:1520000
KS ci ratio: 1.062093e-01	ci left: 8.478301e-04	ci right 9.435618e-04	k: 1360	n:1520000
LOXL2   1520000 perm   1350 sec   (1126 perm/sec)   p_kst 8.947368e-04   p_cons 8.232132e-01   p_joint 2.001316e-03

Joint ci ratio: 7.121401e-02	ci left: 1.906071e-03	ci right 2.047459e-03	k: 3023	n:1530000
Cons ci ratio: 1.468614e-03	ci left: 8.226090e-01	ci right 8.238186e-01	k: 1259518	n:1530000
KS ci ratio: 1.058598e-01	ci left: 8.480150e-04	ci right 9.434330e-04	k: 1369	n:1530000
LOXL2   1530000 perm   1365 sec   (1121 perm/sec)   p_kst 8.947712e-04   p_cons 8.232144e-01   p_joint 1.975817e-03

Joint ci ratio: 7.101474e-02	ci left: 1.904537e-03	ci right 2.045399e-03	k: 3040	n:1540000
Cons ci ratio: 1.463721e-03	ci left: 8.226342e-01	ci right 8.238399e-01	k: 1267786	n:1540000
KS ci ratio: 1.054755e-01	ci left: 8.488304e-04	ci right 9.439718e-04	k: 1379	n:1540000
LOXL2   1540000 perm   1380 sec   (1116 perm/sec)   p_kst 8.954545e-04   p_cons 8.232377e-01   p_joint 1.974026e-03

Joint ci ratio: 7.081714e-02	ci left: 1.903022e-03	ci right 2.043365e-03	k: 3057	n:1550000
Cons ci ratio: 1.459067e-03	ci left: 8.226211e-01	ci right 8.238229e-01	k: 1275995	n:1550000
KS ci ratio: 1.051712e-01	ci left: 8.483794e-04	ci right 9.431789e-04	k: 1387	n:1550000
LOXL2   1550000 perm   1396 sec   (1110 perm/sec)   p_kst 8.948387e-04   p_cons 8.232226e-01   p_joint 1.972258e-03

Joint ci ratio: 7.069031e-02	ci left: 1.897750e-03	ci right 2.037443e-03	k: 3068	n:1560000
Cons ci ratio: 1.454454e-03	ci left: 8.226088e-01	ci right 8.238067e-01	k: 1284205	n:1560000
KS ci ratio: 1.050201e-01	ci left: 8.454377e-04	ci right 9.397644e-04	k: 1391	n:1560000
LOXL2   1560000 perm   1411 sec   (1105 perm/sec)   p_kst 8.916667e-04   p_cons 8.232083e-01   p_joint 1.966667e-03

Joint ci ratio: 7.035846e-02	ci left: 1.903808e-03	ci right 2.043262e-03	k: 3097	n:1570000
Cons ci ratio: 1.449875e-03	ci left: 8.225985e-01	ci right 8.237927e-01	k: 1292418	n:1570000
KS ci ratio: 1.046075e-01	ci left: 8.468754e-04	ci right 9.409686e-04	k: 1402	n:1570000
LOXL2   1570000 perm   1427 sec   (1100 perm/sec)   p_kst 8.929936e-04   p_cons 8.231962e-01   p_joint 1.972611e-03

Joint ci ratio: 7.003124e-02	ci left: 1.909791e-03	ci right 2.049006e-03	k: 3126	n:1580000
Cons ci ratio: 1.444887e-03	ci left: 8.226796e-01	ci right 8.238698e-01	k: 1300775	n:1580000
KS ci ratio: 1.041261e-01	ci left: 8.495286e-04	ci right 9.434556e-04	k: 1415	n:1580000
LOXL2   1580000 perm   1443 sec   (1095 perm/sec)   p_kst 8.955696e-04   p_cons 8.232753e-01   p_joint 1.978481e-03

Joint ci ratio: 6.996445e-02	ci left: 1.901487e-03	ci right 2.039959e-03	k: 3132	n:1590000
Cons ci ratio: 1.440332e-03	ci left: 8.226823e-01	ci right 8.238687e-01	k: 1309009	n:1590000
KS ci ratio: 1.038332e-01	ci left: 8.490863e-04	ci right 9.426842e-04	k: 1423	n:1590000
LOXL2   1590000 perm   1458 sec   (1090 perm/sec)   p_kst 8.949686e-04   p_cons 8.232761e-01   p_joint 1.969811e-03

Joint ci ratio: 6.985327e-02	ci left: 1.895744e-03	ci right 2.033569e-03	k: 3142	n:1600000
Cons ci ratio: 1.435885e-03	ci left: 8.226718e-01	ci right 8.238545e-01	k: 1317222	n:1600000
KS ci ratio: 1.034344e-01	ci left: 8.504763e-04	ci right 9.438455e-04	k: 1434	n:1600000
LOXL2   1600000 perm   1475 sec   (1085 perm/sec)   p_kst 8.962500e-04   p_cons 8.232637e-01   p_joint 1.963750e-03

Joint ci ratio: 7.031472e-02	ci left: 1.858948e-03	ci right 1.995028e-03	k: 3101	n:1610000
Cons ci ratio: 1.431497e-03	ci left: 8.226577e-01	ci right 8.238368e-01	k: 1325429	n:1610000
KS ci ratio: 1.032190e-01	ci left: 8.488242e-04	ci right 9.418061e-04	k: 1440	n:1610000
LOXL2   1610000 perm   1491 sec   (1080 perm/sec)   p_kst 8.944099e-04   p_cons 8.232478e-01   p_joint 1.926087e-03

Joint ci ratio: 7.047466e-02	ci left: 1.838982e-03	ci right 1.973919e-03	k: 3087	n:1620000
Cons ci ratio: 1.426864e-03	ci left: 8.227019e-01	ci right 8.238772e-01	k: 1333730	n:1620000
KS ci ratio: 1.029692e-01	ci left: 8.477941e-04	ci right 9.404249e-04	k: 1447	n:1620000
LOXL2   1620000 perm   1507 sec   (1075 perm/sec)   p_kst 8.932099e-04   p_cons 8.232901e-01   p_joint 1.905556e-03

Joint ci ratio: 7.036102e-02	ci left: 1.833727e-03	ci right 1.968053e-03	k: 3097	n:1630000
Cons ci ratio: 1.422364e-03	ci left: 8.227277e-01	ci right 8.238994e-01	k: 1342002	n:1630000
KS ci ratio: 1.024048e-01	ci left: 8.521569e-04	ci right 9.447233e-04	k: 1463	n:1630000
LOXL2   1630000 perm   1523 sec   (1070 perm/sec)   p_kst 8.975460e-04   p_cons 8.233141e-01   p_joint 1.900000e-03

Joint ci ratio: 7.013497e-02	ci left: 1.834527e-03	ci right 1.968462e-03	k: 3117	n:1640000
Cons ci ratio: 1.417938e-03	ci left: 8.227465e-01	ci right 8.239145e-01	k: 1350263	n:1640000
KS ci ratio: 1.021262e-01	ci left: 8.517141e-04	ci right 9.439655e-04	k: 1471	n:1640000
LOXL2   1640000 perm   1539 sec   (1066 perm/sec)   p_kst 8.969512e-04   p_cons 8.233311e-01   p_joint 1.900610e-03

Joint ci ratio: 6.987764e-02	ci left: 1.837104e-03	ci right 1.970715e-03	k: 3140	n:1650000
Cons ci ratio: 1.413744e-03	ci left: 8.227257e-01	ci right 8.238902e-01	k: 1358459	n:1650000
KS ci ratio: 1.017123e-01	ci left: 8.536396e-04	ci right 9.457025e-04	k: 1483	n:1650000
LOXL2   1650000 perm   1555 sec   (1061 perm/sec)   p_kst 8.987879e-04   p_cons 8.233085e-01   p_joint 1.903030e-03

Joint ci ratio: 6.962311e-02	ci left: 1.839651e-03	ci right 1.972940e-03	k: 3163	n:1660000
Cons ci ratio: 1.409675e-03	ci left: 8.226869e-01	ci right 8.238481e-01	k: 1366625	n:1660000
KS ci ratio: 1.012020e-01	ci left: 8.573041e-04	ci right 9.492708e-04	k: 1498	n:1660000
LOXL2   1660000 perm   1572 sec   (1056 perm/sec)   p_kst 9.024096e-04   p_cons 8.232681e-01   p_joint 1.905422e-03

Joint ci ratio: 7.059128e-02	ci left: 1.778039e-03	ci right 1.908729e-03	k: 3077	n:1670000
Cons ci ratio: 1.405575e-03	ci left: 8.226625e-01	ci right 8.238202e-01	k: 1374814	n:1670000
KS ci ratio: 1.010674e-01	ci left: 8.545051e-04	ci right 9.460424e-04	k: 1502	n:1670000
LOXL2   1670000 perm   1588 sec   (1051 perm/sec)   p_kst 8.994012e-04   p_cons 8.232419e-01   p_joint 1.842515e-03

Joint ci ratio: 7.037439e-02	ci left: 1.778565e-03	ci right 1.908876e-03	k: 3096	n:1680000
Cons ci ratio: 1.401498e-03	ci left: 8.226407e-01	ci right 8.237951e-01	k: 1383007	n:1680000
KS ci ratio: 1.005998e-01	ci left: 8.575420e-04	ci right 9.489545e-04	k: 1516	n:1680000
LOXL2   1680000 perm   1605 sec   (1047 perm/sec)   p_kst 9.023810e-04   p_cons 8.232185e-01   p_joint 1.842857e-03

Joint ci ratio: 7.086938e-02	ci left: 1.743046e-03	ci right 1.871689e-03	k: 3053	n:1690000
Cons ci ratio: 1.397380e-03	ci left: 8.226352e-01	ci right 8.237861e-01	k: 1391227	n:1690000
KS ci ratio: 1.003027e-01	ci left: 8.576594e-04	ci right 9.487986e-04	k: 1525	n:1690000
LOXL2   1690000 perm   1622 sec   (1042 perm/sec)   p_kst 9.023669e-04   p_cons 8.232112e-01   p_joint 1.806509e-03

Joint ci ratio: 7.069605e-02	ci left: 1.741460e-03	ci right 1.869659e-03	k: 3068	n:1700000
Cons ci ratio: 1.393295e-03	ci left: 8.226304e-01	ci right 8.237779e-01	k: 1399448	n:1700000
KS ci ratio: 1.001062e-01	ci left: 8.560553e-04	ci right 9.468353e-04	k: 1531	n:1700000
LOXL2   1700000 perm   1639 sec   (1037 perm/sec)   p_kst 9.005882e-04   p_cons 8.232047e-01   p_joint 1.804706e-03

Joint ci ratio: 6.710126e-02	ci left: 1.924965e-03	ci right 2.059187e-03	k: 3405	n:1710000
Cons ci ratio: 1.389059e-03	ci left: 8.226648e-01	ci right 8.238089e-01	k: 1407736	n:1710000
KS ci ratio: 9.971630e-02	ci left: 8.578914e-04	ci right 9.484910e-04	k: 1543	n:1710000
LOXL2   1710000 perm   1656 sec   (1033 perm/sec)   p_kst 9.023392e-04   p_cons 8.232374e-01   p_joint 1.991228e-03

Outputting figure to mutsig2_images.part000000000098/LOXL2.10_2377_1710000_0.00090234_0.82324_0.0019912.png
                gene_name: LOXL2
               theta_stop: 0.100 
                    nperm: 1710000 
                     p_ks: 0.00090 
        ci_ks_bounds_left: 0.00086 
       ci_ks_bounds_right: 0.00095 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.0020 
     ci_joint_bounds_left: 0.0019 
    ci_joint_bounds_right: 0.0021 

Current progress: 19 percent done.
LPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
Cons ci ratio: 1.195230e-02	ci left: 9.093624e-01	ci right 9.203945e-01	k: 9150	n:10000
KS ci ratio: 3.083799e-01	ci left: 1.344771e-02	ci right 1.844006e-02	k: 158	n:10000
LPA   10000 perm   3 sec   (3427 perm/sec)   p_kst 1.580000e-02   p_cons 9.150000e-01   p_joint 7.270000e-02

Joint ci ratio: 1.140188e-01	ci left: 5.260997e-02	ci right 5.901994e-02	k: 1115	n:20000
Cons ci ratio: 8.517621e-03	ci left: 9.097739e-01	ci right 9.176053e-01	k: 18275	n:20000
KS ci ratio: 2.076863e-01	ci left: 1.568069e-02	ci right 1.936149e-02	k: 349	n:20000
LPA   20000 perm   6 sec   (3165 perm/sec)   p_kst 1.745000e-02   p_cons 9.137500e-01   p_joint 5.575000e-02

Joint ci ratio: 9.871899e-02	ci left: 4.746312e-02	ci right 5.242450e-02	k: 1497	n:30000
Cons ci ratio: 7.022317e-03	ci left: 9.089408e-01	ci right 9.153791e-01	k: 27366	n:30000
KS ci ratio: 1.765505e-01	ci left: 1.473800e-02	ci right 1.762346e-02	k: 484	n:30000
LPA   30000 perm   10 sec   (3062 perm/sec)   p_kst 1.613333e-02   p_cons 9.122000e-01   p_joint 4.990000e-02

Joint ci ratio: 9.775007e-02	ci left: 3.675764e-02	ci right 4.055971e-02	k: 1545	n:40000
Cons ci ratio: 6.087012e-03	ci left: 9.092320e-01	ci right 9.148080e-01	k: 36482	n:40000
KS ci ratio: 1.499399e-01	ci left: 1.553911e-02	ci right 1.808174e-02	k: 671	n:40000
LPA   40000 perm   14 sec   (2948 perm/sec)   p_kst 1.677500e-02   p_cons 9.120500e-01   p_joint 3.862500e-02

Joint ci ratio: 7.064944e-02	ci left: 5.594722e-02	ci right 6.006428e-02	k: 2899	n:50000
Cons ci ratio: 5.450734e-03	ci left: 9.093411e-01	ci right 9.143310e-01	k: 45593	n:50000
KS ci ratio: 1.330672e-01	ci left: 1.592371e-02	ci right 1.821286e-02	k: 852	n:50000
LPA   50000 perm   18 sec   (2854 perm/sec)   p_kst 1.704000e-02   p_cons 9.118600e-01   p_joint 5.798000e-02

Joint ci ratio: 6.571548e-02	ci left: 5.414064e-02	ci right 5.783579e-02	k: 3358	n:60000
Cons ci ratio: 4.678196e-03	ci left: 9.190998e-01	ci right 9.234260e-01	k: 55277	n:60000
KS ci ratio: 1.215096e-01	ci left: 1.601305e-02	ci right 1.810071e-02	k: 1022	n:60000
LPA   60000 perm   21 sec   (2821 perm/sec)   p_kst 1.703333e-02   p_cons 9.212833e-01   p_joint 5.596667e-02

Joint ci ratio: 7.063543e-02	ci left: 4.065230e-02	ci right 4.364294e-02	k: 2949	n:70000
Cons ci ratio: 4.474882e-03	ci left: 9.143396e-01	ci right 9.184544e-01	k: 64149	n:70000
KS ci ratio: 1.148944e-01	ci left: 1.541654e-02	ci right 1.730957e-02	k: 1144	n:70000
LPA   70000 perm   25 sec   (2789 perm/sec)   p_kst 1.634286e-02   p_cons 9.164143e-01   p_joint 4.212857e-02

Joint ci ratio: 6.355086e-02	ci left: 4.395536e-02	ci right 4.685272e-02	k: 3631	n:80000
Cons ci ratio: 4.193737e-03	ci left: 9.141828e-01	ci right 9.180370e-01	k: 73290	n:80000
KS ci ratio: 1.041483e-01	ci left: 1.649302e-02	ci right 1.831721e-02	k: 1391	n:80000
LPA   80000 perm   29 sec   (2749 perm/sec)   p_kst 1.738750e-02   p_cons 9.161250e-01   p_joint 4.538750e-02

Joint ci ratio: 6.119827e-02	ci left: 4.226412e-02	ci right 4.494318e-02	k: 3923	n:90000
Cons ci ratio: 3.952800e-03	ci left: 9.143371e-01	ci right 9.179694e-01	k: 82455	n:90000
KS ci ratio: 9.781133e-02	ci left: 1.667504e-02	ci right 1.840070e-02	k: 1577	n:90000
LPA   90000 perm   33 sec   (2717 perm/sec)   p_kst 1.752222e-02   p_cons 9.161667e-01   p_joint 4.358889e-02

Outputting figure to mutsig2_images.part000000000098/LPA.10_6279_90000_0.017522_0.91617_0.043589.png
                gene_name: LPA
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.045 

Current progress: 21 percent done.
LRFN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.115267e-01	ci left: 2.968021e-02	ci right 3.679509e-02	k: 331	n:10000
Cons ci ratio: 2.437940e-01	ci left: 2.212298e-02	ci right 2.835777e-02	k: 251	n:10000
KS ci ratio: 8.146546e-02	ci left: 1.802855e-01	ci right 1.956967e-01	k: 1879	n:10000
LRFN5   10000 perm   2 sec   (5116 perm/sec)   p_kst 1.879000e-01   p_cons 2.510000e-02   p_joint 3.310000e-02

Joint ci ratio: 1.747179e-01	ci left: 2.240180e-02	ci right 2.673793e-02	k: 490	n:20000
Cons ci ratio: 1.734545e-01	ci left: 2.273688e-02	ci right 2.710273e-02	k: 497	n:20000
KS ci ratio: 5.788060e-02	ci left: 1.811226e-01	ci right 1.919687e-01	k: 3730	n:20000
LRFN5   20000 perm   4 sec   (4579 perm/sec)   p_kst 1.865000e-01   p_cons 2.485000e-02   p_joint 2.450000e-02

Joint ci ratio: 1.029875e-01	ci left: 4.368940e-02	ci right 4.846567e-02	k: 1381	n:30000
Cons ci ratio: 1.429066e-01	ci left: 2.271578e-02	ci right 2.624380e-02	k: 733	n:30000
KS ci ratio: 4.690696e-02	ci left: 1.843852e-01	ci right 1.932752e-01	k: 5664	n:30000
LRFN5   30000 perm   7 sec   (4365 perm/sec)   p_kst 1.888000e-01   p_cons 2.443333e-02   p_joint 4.603333e-02

Joint ci ratio: 9.630138e-02	ci left: 3.785637e-02	ci right 4.171081e-02	k: 1590	n:40000
Cons ci ratio: 1.322245e-01	ci left: 2.007672e-02	ci right 2.294333e-02	k: 859	n:40000
KS ci ratio: 3.988653e-02	ci left: 1.906061e-01	ci right 1.983883e-01	k: 7779	n:40000
LRFN5   40000 perm   9 sec   (4211 perm/sec)   p_kst 1.944750e-01   p_cons 2.147500e-02   p_joint 3.975000e-02

Joint ci ratio: 7.155758e-02	ci left: 5.459035e-02	ci right 5.866132e-02	k: 2830	n:50000
Cons ci ratio: 1.105260e-01	ci left: 2.318206e-02	ci right 2.591353e-02	k: 1226	n:50000
KS ci ratio: 3.569843e-02	ci left: 1.908199e-01	ci right 1.977756e-01	k: 9714	n:50000
LRFN5   50000 perm   12 sec   (4064 perm/sec)   p_kst 1.942800e-01   p_cons 2.452000e-02   p_joint 5.660000e-02

Joint ci ratio: 7.434497e-02	ci left: 4.263460e-02	ci right 4.594299e-02	k: 2656	n:60000
Cons ci ratio: 1.011570e-01	ci left: 2.318018e-02	ci right 2.566612e-02	k: 1464	n:60000
KS ci ratio: 3.239165e-02	ci left: 1.930123e-01	ci right 1.993838e-01	k: 11771	n:60000
LRFN5   60000 perm   15 sec   (3982 perm/sec)   p_kst 1.961833e-01   p_cons 2.440000e-02   p_joint 4.426667e-02

Joint ci ratio: 6.397811e-02	ci left: 4.926921e-02	ci right 5.253958e-02	k: 3562	n:70000
Cons ci ratio: 9.346197e-02	ci left: 2.336736e-02	ci right 2.567228e-02	k: 1715	n:70000
KS ci ratio: 3.000653e-02	ci left: 1.930648e-01	ci right 1.989604e-01	k: 13720	n:70000
LRFN5   70000 perm   18 sec   (3905 perm/sec)   p_kst 1.960000e-01   p_cons 2.450000e-02   p_joint 5.088571e-02

Outputting figure to mutsig2_images.part000000000098/LRFN5.9_2176_70000_0.196_0.0245_0.050886.png
                gene_name: LRFN5
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.053 

Current progress: 22 percent done.
LRIG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.765264e-02	ci left: 3.938637e-01	ci right 4.131925e-01	k: 4035	n:10000
Cons ci ratio: 7.171345e-03	ci left: 9.640458e-01	ci right 9.710784e-01	k: 9677	n:10000
KS ci ratio: 7.102156e-02	ci left: 2.251380e-01	ci right 2.418175e-01	k: 2334	n:10000
LRIG3   10000 perm   2 sec   (4556 perm/sec)   p_kst 2.334000e-01   p_cons 9.677000e-01   p_joint 4.035000e-01

Outputting figure to mutsig2_images.part000000000098/LRIG3.9_3496_10000_0.2334_0.9677_0.4035.png
                gene_name: LRIG3
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 24 percent done.
LRFN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.739355e-02	ci left: 3.088765e-01	ci right 3.272296e-01	k: 3180	n:10000
Cons ci ratio: 3.324445e-02	ci left: 5.718590e-01	ci right 5.912935e-01	k: 5816	n:10000
KS ci ratio: 7.896600e-02	ci left: 1.898346e-01	ci right 2.055419e-01	k: 1976	n:10000
LRFN2   10000 perm   2 sec   (4725 perm/sec)   p_kst 1.976000e-01   p_cons 5.816000e-01   p_joint 3.180000e-01

Outputting figure to mutsig2_images.part000000000098/LRFN2.8_2378_10000_0.1976_0.5816_0.318.png
                gene_name: LRFN2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 25 percent done.
LRP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.649439e-02	ci left: 2.492482e-01	ci right 2.664931e-01	k: 2578	n:10000
Cons ci ratio: 8.327051e-02	ci left: 1.737925e-01	ci right 1.889935e-01	k: 1813	n:10000
KS ci ratio: 6.036682e-02	ci left: 2.875589e-01	ci right 3.055598e-01	k: 2965	n:10000
LRP12   10000 perm   2 sec   (4528 perm/sec)   p_kst 2.965000e-01   p_cons 1.813000e-01   p_joint 2.578000e-01

Outputting figure to mutsig2_images.part000000000098/LRP12.8_2608_10000_0.2965_0.1813_0.2578.png
                gene_name: LRP12
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 27 percent done.
LONRF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.176417e-01	ci left: 1.261754e-02	ci right 1.747097e-02	k: 149	n:10000
Cons ci ratio: 1.180551e-01	ci left: 9.340841e-02	ci right 1.052262e-01	k: 992	n:10000
KS ci ratio: 7.991661e-01	ci left: 1.458544e-03	ci right 3.449143e-03	k: 23	n:10000
LONRF2   10000 perm   2 sec   (4592 perm/sec)   p_kst 2.300000e-03   p_cons 9.920000e-02   p_joint 1.490000e-02

Joint ci ratio: 2.900427e-01	ci left: 7.737913e-03	ci right 1.040775e-02	k: 180	n:20000
Cons ci ratio: 8.030626e-02	ci left: 1.021590e-01	ci right 1.107558e-01	k: 2128	n:20000
KS ci ratio: 5.711043e-01	ci left: 1.684366e-03	ci right 3.066699e-03	k: 46	n:20000
LONRF2   20000 perm   5 sec   (3931 perm/sec)   p_kst 2.300000e-03   p_cons 1.064000e-01   p_joint 9.000000e-03

Joint ci ratio: 3.417378e-01	ci left: 3.621720e-03	ci right 5.143390e-03	k: 130	n:30000
Cons ci ratio: 6.600472e-02	ci left: 1.017170e-01	ci right 1.086930e-01	k: 3155	n:30000
KS ci ratio: 4.551208e-01	ci left: 1.907815e-03	ci right 3.058593e-03	k: 73	n:30000
LONRF2   30000 perm   8 sec   (3834 perm/sec)   p_kst 2.433333e-03   p_cons 1.051667e-01   p_joint 4.333333e-03

Joint ci ratio: 3.975279e-01	ci left: 1.944427e-03	ci right 2.930033e-03	k: 96	n:40000
Cons ci ratio: 5.725322e-02	ci left: 1.018887e-01	ci right 1.079188e-01	k: 4195	n:40000
KS ci ratio: 3.876378e-01	ci left: 2.057110e-03	ci right 3.067270e-03	k: 101	n:40000
LONRF2   40000 perm   11 sec   (3784 perm/sec)   p_kst 2.525000e-03   p_cons 1.048750e-01   p_joint 2.400000e-03

Joint ci ratio: 3.604356e-01	ci left: 1.935616e-03	ci right 2.803777e-03	k: 117	n:50000
Cons ci ratio: 5.140625e-02	ci left: 1.014955e-01	ci right 1.068705e-01	k: 5208	n:50000
KS ci ratio: 3.544634e-01	ci left: 2.008446e-03	ci right 2.890909e-03	k: 121	n:50000
LONRF2   50000 perm   13 sec   (3720 perm/sec)   p_kst 2.420000e-03   p_cons 1.041600e-01   p_joint 2.340000e-03

Joint ci ratio: 3.229172e-01	ci left: 2.055015e-03	ci right 2.860984e-03	k: 146	n:60000
Cons ci ratio: 4.802748e-02	ci left: 9.752816e-02	ci right 1.023440e-01	k: 5995	n:60000
KS ci ratio: 3.229172e-01	ci left: 2.055015e-03	ci right 2.860984e-03	k: 146	n:60000
LONRF2   60000 perm   16 sec   (3680 perm/sec)   p_kst 2.433333e-03   p_cons 9.991667e-02   p_joint 2.433333e-03

Joint ci ratio: 3.076255e-01	ci left: 1.958765e-03	ci right 2.683477e-03	k: 161	n:70000
Cons ci ratio: 4.429736e-02	ci left: 9.838114e-02	ci right 1.028520e-01	k: 7042	n:70000
KS ci ratio: 2.985276e-01	ci left: 2.090783e-03	ci right 2.837130e-03	k: 171	n:70000
LONRF2   70000 perm   19 sec   (3610 perm/sec)   p_kst 2.442857e-03   p_cons 1.006000e-01   p_joint 2.300000e-03

Joint ci ratio: 2.977078e-01	ci left: 1.840963e-03	ci right 2.495980e-03	k: 172	n:80000
Cons ci ratio: 4.149129e-02	ci left: 9.828857e-02	ci right 1.024655e-01	k: 8029	n:80000
KS ci ratio: 2.789426e-01	ci left: 2.119332e-03	ci right 2.817531e-03	k: 196	n:80000
LONRF2   80000 perm   22 sec   (3560 perm/sec)   p_kst 2.450000e-03   p_cons 1.003625e-01   p_joint 2.150000e-03

Joint ci ratio: 1.599010e-01	ci left: 6.102728e-03	ci right 7.173888e-03	k: 596	n:90000
Cons ci ratio: 3.816450e-02	ci left: 1.029163e-01	ci right 1.069314e-01	k: 9442	n:90000
KS ci ratio: 2.559236e-01	ci left: 2.267470e-03	ci right 2.943003e-03	k: 233	n:90000
LONRF2   90000 perm   26 sec   (3515 perm/sec)   p_kst 2.588889e-03   p_cons 1.049111e-01   p_joint 6.622222e-03

Joint ci ratio: 1.888520e-01	ci left: 3.884823e-03	ci right 4.704339e-03	k: 428	n:100000
Cons ci ratio: 3.621033e-02	ci left: 1.029974e-01	ci right 1.068056e-01	k: 10489	n:100000
KS ci ratio: 2.451655e-01	ci left: 2.237538e-03	ci right 2.871865e-03	k: 254	n:100000
LONRF2   100000 perm   29 sec   (3472 perm/sec)   p_kst 2.540000e-03   p_cons 1.048900e-01   p_joint 4.280000e-03

Joint ci ratio: 1.670357e-01	ci left: 4.565591e-03	ci right 5.406289e-03	k: 547	n:110000
Cons ci ratio: 3.531864e-02	ci left: 9.892764e-02	ci right 1.024934e-01	k: 11077	n:110000
KS ci ratio: 2.339654e-01	ci left: 2.247763e-03	ci right 2.851669e-03	k: 279	n:110000
LONRF2   110000 perm   32 sec   (3426 perm/sec)   p_kst 2.536364e-03   p_cons 1.007000e-01   p_joint 4.972727e-03

Joint ci ratio: 1.820227e-01	ci left: 3.499526e-03	ci right 4.208117e-03	k: 461	n:120000
Cons ci ratio: 3.389476e-02	ci left: 9.858106e-02	ci right 1.019883e-01	k: 12033	n:120000
KS ci ratio: 2.212814e-01	ci left: 2.319789e-03	ci right 2.904661e-03	k: 312	n:120000
LONRF2   120000 perm   36 sec   (3380 perm/sec)   p_kst 2.600000e-03   p_cons 1.002750e-01   p_joint 3.841667e-03

Joint ci ratio: 1.762122e-01	ci left: 3.458096e-03	ci right 4.133565e-03	k: 492	n:130000
Cons ci ratio: 3.256203e-02	ci left: 9.866448e-02	ci right 1.019380e-01	k: 13038	n:130000
KS ci ratio: 2.165029e-01	ci left: 2.243122e-03	ci right 2.794827e-03	k: 326	n:130000
LONRF2   130000 perm   39 sec   (3333 perm/sec)   p_kst 2.507692e-03   p_cons 1.002923e-01   p_joint 3.784615e-03

Joint ci ratio: 1.727542e-01	ci left: 3.347691e-03	ci right 3.987423e-03	k: 512	n:140000
Cons ci ratio: 3.136391e-02	ci left: 9.880209e-02	ci right 1.019573e-01	k: 14052	n:140000
KS ci ratio: 2.080813e-01	ci left: 2.265509e-03	ci right 2.798286e-03	k: 353	n:140000
LONRF2   140000 perm   43 sec   (3291 perm/sec)   p_kst 2.521429e-03   p_cons 1.003714e-01   p_joint 3.657143e-03

Joint ci ratio: 1.826892e-01	ci left: 2.780437e-03	ci right 3.345708e-03	k: 458	n:150000
Cons ci ratio: 3.027560e-02	ci left: 9.900271e-02	ci right 1.020527e-01	k: 15078	n:150000
KS ci ratio: 2.021741e-01	ci left: 2.247283e-03	ci right 2.758917e-03	k: 374	n:150000
LONRF2   150000 perm   46 sec   (3238 perm/sec)   p_kst 2.493333e-03   p_cons 1.005200e-01   p_joint 3.053333e-03

Joint ci ratio: 1.780962e-01	ci left: 2.749883e-03	ci right 3.293373e-03	k: 482	n:160000
Cons ci ratio: 2.933072e-02	ci left: 9.895017e-02	ci right 1.019018e-01	k: 16067	n:160000
KS ci ratio: 1.947803e-01	ci left: 2.279076e-03	ci right 2.776724e-03	k: 403	n:160000
LONRF2   160000 perm   50 sec   (3197 perm/sec)   p_kst 2.518750e-03   p_cons 1.004188e-01   p_joint 3.012500e-03

Joint ci ratio: 1.811461e-01	ci left: 2.498209e-03	ci right 3.001339e-03	k: 466	n:170000
Cons ci ratio: 2.783841e-02	ci left: 1.029970e-01	ci right 1.059106e-01	k: 17756	n:170000
KS ci ratio: 1.866361e-01	ci left: 2.346678e-03	ci right 2.835237e-03	k: 439	n:170000
LONRF2   170000 perm   54 sec   (3158 perm/sec)   p_kst 2.582353e-03   p_cons 1.044471e-01   p_joint 2.741176e-03

Joint ci ratio: 1.827360e-01	ci left: 2.316980e-03	ci right 2.788158e-03	k: 458	n:180000
Cons ci ratio: 2.702001e-02	ci left: 1.032726e-01	ci right 1.061068e-01	k: 18843	n:180000
KS ci ratio: 1.811600e-01	ci left: 2.359404e-03	ci right 2.834619e-03	k: 466	n:180000
LONRF2   180000 perm   58 sec   (3113 perm/sec)   p_kst 2.588889e-03   p_cons 1.046833e-01   p_joint 2.544444e-03

Joint ci ratio: 1.779543e-01	ci left: 2.320673e-03	ci right 2.778925e-03	k: 483	n:190000
Cons ci ratio: 2.634367e-02	ci left: 1.029971e-01	ci right 1.057518e-01	k: 19830	n:190000
KS ci ratio: 1.761392e-01	ci left: 2.370978e-03	ci right 2.833880e-03	k: 493	n:190000
LONRF2   190000 perm   62 sec   (3074 perm/sec)   p_kst 2.594737e-03   p_cons 1.043684e-01   p_joint 2.542105e-03

Joint ci ratio: 1.329951e-01	ci left: 4.037272e-03	ci right 4.617239e-03	k: 864	n:200000
Cons ci ratio: 2.566959e-02	ci left: 1.030830e-01	ci right 1.057685e-01	k: 20884	n:200000
KS ci ratio: 1.721780e-01	ci left: 2.362415e-03	ci right 2.812195e-03	k: 516	n:200000
LONRF2   200000 perm   66 sec   (3034 perm/sec)   p_kst 2.580000e-03   p_cons 1.044200e-01   p_joint 4.320000e-03

Joint ci ratio: 1.301684e-01	ci left: 4.020015e-03	ci right 4.584279e-03	k: 902	n:210000
Cons ci ratio: 2.501992e-02	ci left: 1.033463e-01	ci right 1.059694e-01	k: 21977	n:210000
KS ci ratio: 1.686291e-01	ci left: 2.350212e-03	ci right 2.787508e-03	k: 538	n:210000
LONRF2   210000 perm   70 sec   (2995 perm/sec)   p_kst 2.561905e-03   p_cons 1.046524e-01   p_joint 4.295238e-03

Joint ci ratio: 1.334870e-01	ci left: 3.643834e-03	ci right 4.169369e-03	k: 858	n:220000
Cons ci ratio: 2.446103e-02	ci left: 1.032518e-01	ci right 1.058132e-01	k: 22996	n:220000
KS ci ratio: 1.644119e-01	ci left: 2.365355e-03	ci right 2.793373e-03	k: 566	n:220000
LONRF2   220000 perm   74 sec   (2958 perm/sec)   p_kst 2.572727e-03   p_cons 1.045273e-01   p_joint 3.900000e-03

Joint ci ratio: 1.328019e-01	ci left: 3.523219e-03	ci right 4.028544e-03	k: 867	n:230000
Cons ci ratio: 2.391410e-02	ci left: 1.033521e-01	ci right 1.058579e-01	k: 24058	n:230000
KS ci ratio: 1.602262e-01	ci left: 2.387653e-03	ci right 2.807648e-03	k: 596	n:230000
LONRF2   230000 perm   79 sec   (2922 perm/sec)   p_kst 2.591304e-03   p_cons 1.046000e-01   p_joint 3.769565e-03

Joint ci ratio: 1.390608e-01	ci left: 3.070464e-03	ci right 3.533326e-03	k: 791	n:240000
Cons ci ratio: 2.338929e-02	ci left: 1.035483e-01	ci right 1.060030e-01	k: 25145	n:240000
KS ci ratio: 1.569735e-01	ci left: 2.388200e-03	ci right 2.798960e-03	k: 621	n:240000
LONRF2   240000 perm   83 sec   (2888 perm/sec)   p_kst 2.587500e-03   p_cons 1.047708e-01   p_joint 3.295833e-03

Joint ci ratio: 1.378531e-01	ci left: 3.001698e-03	ci right 3.449941e-03	k: 805	n:250000
Cons ci ratio: 2.291270e-02	ci left: 1.036059e-01	ci right 1.060113e-01	k: 26201	n:250000
KS ci ratio: 1.533184e-01	ci left: 2.408015e-03	ci right 2.811654e-03	k: 651	n:250000
LONRF2   250000 perm   88 sec   (2852 perm/sec)   p_kst 2.604000e-03   p_cons 1.048040e-01   p_joint 3.220000e-03

Joint ci ratio: 1.470175e-01	ci left: 2.526407e-03	ci right 2.930959e-03	k: 708	n:260000
Cons ci ratio: 2.247009e-02	ci left: 1.036098e-01	ci right 1.059682e-01	k: 27244	n:260000
KS ci ratio: 1.507966e-01	ci left: 2.396794e-03	ci right 2.791347e-03	k: 673	n:260000
LONRF2   260000 perm   92 sec   (2812 perm/sec)   p_kst 2.588462e-03   p_cons 1.047846e-01   p_joint 2.723077e-03

Joint ci ratio: 1.451886e-01	ci left: 2.497063e-03	ci right 2.891510e-03	k: 726	n:270000
Cons ci ratio: 2.204870e-02	ci left: 1.036434e-01	ci right 1.059577e-01	k: 28295	n:270000
KS ci ratio: 1.480757e-01	ci left: 2.397154e-03	ci right 2.784016e-03	k: 698	n:270000
LONRF2   270000 perm   97 sec   (2781 perm/sec)   p_kst 2.585185e-03   p_cons 1.047963e-01   p_joint 2.688889e-03

Joint ci ratio: 1.436197e-01	ci left: 2.462957e-03	ci right 2.847452e-03	k: 742	n:280000
Cons ci ratio: 2.163822e-02	ci left: 1.037780e-01	ci right 1.060516e-01	k: 29375	n:280000
KS ci ratio: 1.452959e-01	ci left: 2.404432e-03	ci right 2.784552e-03	k: 725	n:280000
LONRF2   280000 perm   102 sec   (2747 perm/sec)   p_kst 2.589286e-03   p_cons 1.049107e-01   p_joint 2.650000e-03

Joint ci ratio: 1.484086e-01	ci left: 2.221857e-03	ci right 2.581306e-03	k: 695	n:290000
Cons ci ratio: 2.125100e-02	ci left: 1.038934e-01	ci right 1.061283e-01	k: 30452	n:290000
KS ci ratio: 1.422885e-01	ci left: 2.424573e-03	ci right 2.799270e-03	k: 756	n:290000
LONRF2   290000 perm   107 sec   (2716 perm/sec)   p_kst 2.606897e-03   p_cons 1.050069e-01   p_joint 2.396552e-03

Joint ci ratio: 1.503762e-01	ci left: 2.090027e-03	ci right 2.433035e-03	k: 677	n:300000
Cons ci ratio: 2.089497e-02	ci left: 1.039019e-01	ci right 1.060991e-01	k: 31499	n:300000
KS ci ratio: 1.404468e-01	ci left: 2.408061e-03	ci right 2.774986e-03	k: 776	n:300000
LONRF2   300000 perm   112 sec   (2686 perm/sec)   p_kst 2.586667e-03   p_cons 1.049967e-01   p_joint 2.256667e-03

Joint ci ratio: 1.478886e-01	ci left: 2.094032e-03	ci right 2.431509e-03	k: 700	n:310000
Cons ci ratio: 2.053441e-02	ci left: 1.041092e-01	ci right 1.062724e-01	k: 32608	n:310000
KS ci ratio: 1.383271e-01	ci left: 2.405101e-03	ci right 2.765588e-03	k: 800	n:310000
LONRF2   310000 perm   117 sec   (2657 perm/sec)   p_kst 2.580645e-03   p_cons 1.051871e-01   p_joint 2.258065e-03

Joint ci ratio: 1.469515e-01	ci left: 2.055678e-03	ci right 2.384690e-03	k: 709	n:320000
Cons ci ratio: 2.020595e-02	ci left: 1.041732e-01	ci right 1.063027e-01	k: 33675	n:320000
KS ci ratio: 1.361353e-01	ci left: 2.408402e-03	ci right 2.763201e-03	k: 826	n:320000
LONRF2   320000 perm   122 sec   (2627 perm/sec)   p_kst 2.581250e-03   p_cons 1.052344e-01   p_joint 2.215625e-03

Joint ci ratio: 1.441355e-01	ci left: 2.075145e-03	ci right 2.400361e-03	k: 737	n:330000
Cons ci ratio: 1.990301e-02	ci left: 1.041371e-01	ci right 1.062335e-01	k: 34710	n:330000
KS ci ratio: 1.345993e-01	ci left: 2.391045e-03	ci right 2.738994e-03	k: 845	n:330000
LONRF2   330000 perm   127 sec   (2597 perm/sec)   p_kst 2.560606e-03   p_cons 1.051818e-01   p_joint 2.233333e-03

Joint ci ratio: 1.444348e-01	ci left: 2.005602e-03	ci right 2.320627e-03	k: 734	n:340000
Cons ci ratio: 1.960962e-02	ci left: 1.041384e-01	ci right 1.062036e-01	k: 35757	n:340000
KS ci ratio: 1.331914e-01	ci left: 2.371886e-03	ci right 2.713151e-03	k: 863	n:340000
LONRF2   340000 perm   132 sec   (2569 perm/sec)   p_kst 2.538235e-03   p_cons 1.051676e-01   p_joint 2.158824e-03

Joint ci ratio: 1.011662e-01	ci left: 4.055269e-03	ci right 4.490144e-03	k: 1494	n:350000
Cons ci ratio: 1.933088e-02	ci left: 1.041200e-01	ci right 1.061552e-01	k: 36797	n:350000
KS ci ratio: 1.310838e-01	ci left: 2.381474e-03	ci right 2.718275e-03	k: 891	n:350000
LONRF2   350000 perm   138 sec   (2542 perm/sec)   p_kst 2.545714e-03   p_cons 1.051343e-01   p_joint 4.268571e-03

Joint ci ratio: 1.029149e-01	ci left: 3.807253e-03	ci right 4.223015e-03	k: 1444	n:360000
Cons ci ratio: 1.906033e-02	ci left: 1.041359e-01	ci right 1.061426e-01	k: 37849	n:360000
KS ci ratio: 1.292847e-01	ci left: 2.382505e-03	ci right 2.714472e-03	k: 916	n:360000
LONRF2   360000 perm   143 sec   (2515 perm/sec)   p_kst 2.544444e-03   p_cons 1.051361e-01   p_joint 4.011111e-03

Joint ci ratio: 1.030997e-01	ci left: 3.691178e-03	ci right 4.095031e-03	k: 1439	n:370000
Cons ci ratio: 1.881516e-02	ci left: 1.040086e-01	ci right 1.059868e-01	k: 38848	n:370000
KS ci ratio: 1.278300e-01	ci left: 2.373044e-03	ci right 2.699690e-03	k: 937	n:370000
LONRF2   370000 perm   149 sec   (2488 perm/sec)   p_kst 2.532432e-03   p_cons 1.049946e-01   p_joint 3.889189e-03

Joint ci ratio: 1.018350e-01	ci left: 3.686350e-03	ci right 4.084432e-03	k: 1475	n:380000
Cons ci ratio: 1.856931e-02	ci left: 1.039877e-01	ci right 1.059394e-01	k: 39885	n:380000
KS ci ratio: 1.258980e-01	ci left: 2.384490e-03	ci right 2.707381e-03	k: 966	n:380000
LONRF2   380000 perm   154 sec   (2462 perm/sec)   p_kst 2.542105e-03   p_cons 1.049605e-01   p_joint 3.881579e-03

Joint ci ratio: 1.018748e-01	ci left: 3.589320e-03	ci right 3.977084e-03	k: 1474	n:390000
Cons ci ratio: 1.832986e-02	ci left: 1.039987e-01	ci right 1.059251e-01	k: 40934	n:390000
KS ci ratio: 1.241136e-01	ci left: 2.392900e-03	ci right 2.711999e-03	k: 994	n:390000
LONRF2   390000 perm   160 sec   (2437 perm/sec)   p_kst 2.548718e-03   p_cons 1.049590e-01   p_joint 3.779487e-03

Joint ci ratio: 8.743435e-02	ci left: 4.781314e-03	ci right 5.220903e-03	k: 1999	n:400000
Cons ci ratio: 1.810377e-02	ci left: 1.039645e-01	ci right 1.058663e-01	k: 41965	n:400000
KS ci ratio: 1.221041e-01	ci left: 2.413038e-03	ci right 2.729236e-03	k: 1027	n:400000
LONRF2   400000 perm   166 sec   (2412 perm/sec)   p_kst 2.567500e-03   p_cons 1.049125e-01   p_joint 4.997500e-03

Joint ci ratio: 8.617159e-02	ci left: 4.805478e-03	ci right 5.240587e-03	k: 2058	n:410000
Cons ci ratio: 1.787841e-02	ci left: 1.040098e-01	ci right 1.058885e-01	k: 43028	n:410000
KS ci ratio: 1.201324e-01	ci left: 2.434600e-03	ci right 2.748106e-03	k: 1061	n:410000
LONRF2   410000 perm   172 sec   (2387 perm/sec)   p_kst 2.587805e-03   p_cons 1.049463e-01   p_joint 5.019512e-03

Joint ci ratio: 8.494186e-02	ci left: 4.830865e-03	ci right 5.261721e-03	k: 2118	n:420000
Cons ci ratio: 1.766642e-02	ci left: 1.039985e-01	ci right 1.058545e-01	k: 44068	n:420000
KS ci ratio: 1.182532e-01	ci left: 2.455173e-03	ci right 2.766038e-03	k: 1095	n:420000
LONRF2   420000 perm   178 sec   (2363 perm/sec)   p_kst 2.607143e-03   p_cons 1.049238e-01   p_joint 5.042857e-03

Joint ci ratio: 8.850055e-02	ci left: 4.340793e-03	ci right 4.744998e-03	k: 1952	n:430000
Cons ci ratio: 1.745552e-02	ci left: 1.040551e-01	ci right 1.058897e-01	k: 45137	n:430000
KS ci ratio: 1.170320e-01	ci left: 2.449990e-03	ci right 2.756773e-03	k: 1118	n:430000
LONRF2   430000 perm   184 sec   (2337 perm/sec)   p_kst 2.600000e-03   p_cons 1.049698e-01   p_joint 4.539535e-03

Joint ci ratio: 8.730098e-02	ci left: 4.362170e-03	ci right 4.762579e-03	k: 2006	n:440000
Cons ci ratio: 1.726306e-02	ci left: 1.039893e-01	ci right 1.058023e-01	k: 46153	n:440000
KS ci ratio: 1.153929e-01	ci left: 2.464923e-03	ci right 2.768958e-03	k: 1150	n:440000
LONRF2   440000 perm   190 sec   (2315 perm/sec)   p_kst 2.613636e-03   p_cons 1.048932e-01   p_joint 4.559091e-03

Joint ci ratio: 7.978620e-02	ci left: 5.122608e-03	ci right 5.550466e-03	k: 2400	n:450000
Cons ci ratio: 1.707138e-02	ci left: 1.039862e-01	ci right 1.057789e-01	k: 47196	n:450000
KS ci ratio: 1.141599e-01	ci left: 2.464107e-03	ci right 2.764576e-03	k: 1175	n:450000
LONRF2   450000 perm   196 sec   (2293 perm/sec)   p_kst 2.611111e-03   p_cons 1.048800e-01   p_joint 5.333333e-03

Joint ci ratio: 7.885536e-02	ci left: 5.132703e-03	ci right 5.556173e-03	k: 2457	n:460000
Cons ci ratio: 1.689416e-02	ci left: 1.038924e-01	ci right 1.056647e-01	k: 48197	n:460000
KS ci ratio: 1.125903e-01	ci left: 2.480246e-03	ci right 2.778248e-03	k: 1208	n:460000
LONRF2   460000 perm   203 sec   (2271 perm/sec)   p_kst 2.626087e-03   p_cons 1.047761e-01   p_joint 5.341304e-03

Joint ci ratio: 7.116140e-02	ci left: 6.186544e-03	ci right 6.645104e-03	k: 3014	n:470000
Cons ci ratio: 1.670982e-02	ci left: 1.039427e-01	ci right 1.056963e-01	k: 49264	n:470000
KS ci ratio: 1.115802e-01	ci left: 2.472970e-03	ci right 2.767257e-03	k: 1230	n:470000
LONRF2   470000 perm   209 sec   (2249 perm/sec)   p_kst 2.617021e-03   p_cons 1.048170e-01   p_joint 6.412766e-03

Joint ci ratio: 7.051020e-02	ci left: 6.172256e-03	ci right 6.625399e-03	k: 3070	n:480000
Cons ci ratio: 1.653323e-02	ci left: 1.039701e-01	ci right 1.057055e-01	k: 50321	n:480000
KS ci ratio: 1.100696e-01	ci left: 2.490321e-03	ci right 2.782400e-03	k: 1264	n:480000
LONRF2   480000 perm   216 sec   (2227 perm/sec)   p_kst 2.633333e-03   p_cons 1.048354e-01   p_joint 6.395833e-03

Joint ci ratio: 1.028273e-01	ci left: 2.805045e-03	ci right 3.111083e-03	k: 1448	n:490000
Cons ci ratio: 1.713777e-02	ci left: 9.564615e-02	ci right 9.730148e-02	k: 47271	n:490000
KS ci ratio: 1.090403e-01	ci left: 2.487136e-03	ci right 2.775938e-03	k: 1288	n:490000
LONRF2   490000 perm   222 sec   (2206 perm/sec)   p_kst 2.628571e-03   p_cons 9.647143e-02   p_joint 2.955102e-03

Joint ci ratio: 1.016413e-01	ci left: 2.815206e-03	ci right 3.118599e-03	k: 1482	n:500000
Cons ci ratio: 1.696002e-02	ci left: 9.571079e-02	ci right 9.734989e-02	k: 48264	n:500000
KS ci ratio: 1.083293e-01	ci left: 2.470467e-03	ci right 2.755345e-03	k: 1305	n:500000
LONRF2   500000 perm   229 sec   (2185 perm/sec)   p_kst 2.610000e-03   p_cons 9.652800e-02   p_joint 2.964000e-03

Joint ci ratio: 1.005286e-01	ci left: 2.823076e-03	ci right 3.123791e-03	k: 1515	n:510000
Cons ci ratio: 1.678204e-02	ci left: 9.583158e-02	ci right 9.745536e-02	k: 49287	n:510000
KS ci ratio: 1.070255e-01	ci left: 2.483083e-03	ci right 2.765752e-03	k: 1337	n:510000
LONRF2   510000 perm   236 sec   (2165 perm/sec)   p_kst 2.621569e-03   p_cons 9.664118e-02   p_joint 2.970588e-03

Joint ci ratio: 9.990553e-02	ci left: 2.804408e-03	ci right 3.101173e-03	k: 1534	n:520000
Cons ci ratio: 1.661393e-02	ci left: 9.590182e-02	ci right 9.751037e-02	k: 50286	n:520000
KS ci ratio: 1.060006e-01	ci left: 2.483999e-03	ci right 2.763896e-03	k: 1363	n:520000
LONRF2   520000 perm   242 sec   (2145 perm/sec)   p_kst 2.621154e-03   p_cons 9.670385e-02   p_joint 2.950000e-03

Joint ci ratio: 1.037400e-01	ci left: 2.547374e-03	ci right 2.827917e-03	k: 1423	n:530000
Cons ci ratio: 1.646447e-02	ci left: 9.582475e-02	ci right 9.741740e-02	k: 51208	n:530000
KS ci ratio: 1.048534e-01	ci left: 2.492243e-03	ci right 2.769842e-03	k: 1393	n:530000
LONRF2   530000 perm   249 sec   (2125 perm/sec)   p_kst 2.628302e-03   p_cons 9.661887e-02   p_joint 2.684906e-03

Joint ci ratio: 1.028770e-01	ci left: 2.543496e-03	ci right 2.821141e-03	k: 1447	n:540000
Cons ci ratio: 1.630771e-02	ci left: 9.587052e-02	ci right 9.744862e-02	k: 52195	n:540000
KS ci ratio: 1.038158e-01	ci left: 2.496590e-03	ci right 2.771753e-03	k: 1421	n:540000
LONRF2   540000 perm   256 sec   (2106 perm/sec)   p_kst 2.631481e-03   p_cons 9.665741e-02   p_joint 2.679630e-03

Joint ci ratio: 1.019311e-01	ci left: 2.545085e-03	ci right 2.820195e-03	k: 1474	n:550000
Cons ci ratio: 1.616056e-02	ci left: 9.585854e-02	ci right 9.742207e-02	k: 53151	n:550000
KS ci ratio: 1.028439e-01	ci left: 2.499019e-03	ci right 2.771716e-03	k: 1448	n:550000
LONRF2   550000 perm   263 sec   (2088 perm/sec)   p_kst 2.632727e-03   p_cons 9.663818e-02   p_joint 2.680000e-03

Joint ci ratio: 8.944813e-02	ci left: 3.264934e-03	ci right 3.572381e-03	k: 1913	n:560000
Cons ci ratio: 1.601568e-02	ci left: 9.586484e-02	ci right 9.741433e-02	k: 54117	n:560000
KS ci ratio: 1.017607e-01	ci left: 2.508336e-03	ci right 2.778994e-03	k: 1479	n:560000
LONRF2   560000 perm   271 sec   (2068 perm/sec)   p_kst 2.641071e-03   p_cons 9.663750e-02   p_joint 3.416071e-03

Joint ci ratio: 8.725939e-02	ci left: 3.374079e-03	ci right 3.683633e-03	k: 2010	n:570000
Cons ci ratio: 1.586778e-02	ci left: 9.594616e-02	ci right 9.748251e-02	k: 55126	n:570000
KS ci ratio: 1.024595e-01	ci left: 2.430133e-03	ci right 2.694262e-03	k: 1459	n:570000
LONRF2   570000 perm   278 sec   (2050 perm/sec)   p_kst 2.559649e-03   p_cons 9.671228e-02   p_joint 3.526316e-03

Joint ci ratio: 8.648863e-02	ci left: 3.376626e-03	ci right 3.683539e-03	k: 2046	n:580000
Cons ci ratio: 1.573042e-02	ci left: 9.595257e-02	ci right 9.747560e-02	k: 56093	n:580000
KS ci ratio: 1.017654e-01	ci left: 2.421836e-03	ci right 2.683173e-03	k: 1479	n:580000
LONRF2   580000 perm   285 sec   (2033 perm/sec)   p_kst 2.550000e-03   p_cons 9.671207e-02   p_joint 3.527586e-03

Joint ci ratio: 8.781403e-02	ci left: 3.218247e-03	ci right 3.515476e-03	k: 1985	n:590000
Cons ci ratio: 1.559535e-02	ci left: 9.597233e-02	ci right 9.748248e-02	k: 57068	n:590000
KS ci ratio: 1.010851e-01	ci left: 2.413826e-03	ci right 2.672454e-03	k: 1499	n:590000
LONRF2   590000 perm   293 sec   (2015 perm/sec)   p_kst 2.540678e-03   p_cons 9.672542e-02   p_joint 3.364407e-03

Joint ci ratio: 8.709347e-02	ci left: 3.218406e-03	ci right 3.513088e-03	k: 2018	n:600000
Cons ci ratio: 1.546901e-02	ci left: 9.593170e-02	ci right 9.742887e-02	k: 58007	n:600000
KS ci ratio: 1.001873e-01	ci left: 2.417463e-03	ci right 2.674045e-03	k: 1526	n:600000
LONRF2   600000 perm   300 sec   (1999 perm/sec)   p_kst 2.543333e-03   p_cons 9.667833e-02   p_joint 3.363333e-03

Joint ci ratio: 8.784108e-02	ci left: 3.111120e-03	ci right 3.398548e-03	k: 1984	n:610000
Cons ci ratio: 1.534512e-02	ci left: 9.589898e-02	ci right 9.738355e-02	k: 58950	n:610000
KS ci ratio: 9.921708e-02	ci left: 2.425787e-03	ci right 2.680614e-03	k: 1556	n:610000
LONRF2   610000 perm   308 sec   (1982 perm/sec)   p_kst 2.550820e-03   p_cons 9.663934e-02   p_joint 3.252459e-03

Outputting figure to mutsig2_images.part000000000098/LONRF2.7_2313_610000_0.0025508_0.096639_0.0032525.png
                gene_name: LONRF2
               theta_stop: 0.099 
                    nperm: 610000 
                     p_ks: 0.0026 
        ci_ks_bounds_left: 0.0024 
       ci_ks_bounds_right: 0.0027 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.0033 
     ci_joint_bounds_left: 0.0031 
    ci_joint_bounds_right: 0.0034 

Current progress: 29 percent done.
LPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.344460e-02	ci left: 8.886212e-01	ci right 9.007478e-01	k: 8948	n:10000
KS ci ratio: 1.777363e-02	ci left: 8.219835e-01	ci right 8.368241e-01	k: 8295	n:10000
LPL   10000 perm   2 sec   (5580 perm/sec)   p_kst 8.295000e-01   p_cons 8.948000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LPL.6_1468_10000_0.8295_0.8948_1.png
                gene_name: LPL
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
LOC81691
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.918697e-03	ci left: 9.747193e-01	ci right 9.805979e-01	k: 9778	n:10000
KS ci ratio: 2.825238e-02	ci left: 6.487080e-01	ci right 6.673999e-01	k: 6581	n:10000
LOC81691   10000 perm   2 sec   (4815 perm/sec)   p_kst 6.581000e-01   p_cons 9.778000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LOC81691.5_2401_10000_0.6581_0.9778_1.png
                gene_name: LOC81691
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
LOXL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.345253e-02	ci left: 7.276467e-01	ci right 7.450155e-01	k: 7364	n:10000
Cons ci ratio: 5.612854e-03	ci left: 9.770621e-01	ci right 9.826535e-01	k: 9800	n:10000
KS ci ratio: 4.035556e-02	ci left: 4.755598e-01	ci right 4.952487e-01	k: 4854	n:10000
LOXL3   10000 perm   2 sec   (5043 perm/sec)   p_kst 4.854000e-01   p_cons 9.800000e-01   p_joint 7.364000e-01

Outputting figure to mutsig2_images.part000000000098/LOXL3.5_2314_10000_0.4854_0.98_0.7364.png
                gene_name: LOXL3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 33 percent done.
LPAR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.786111e-02	ci left: 3.917725e-01	ci right 4.110850e-01	k: 4014	n:10000
Cons ci ratio: 2.270415e-02	ci left: 7.401779e-01	ci right 7.572770e-01	k: 7488	n:10000
KS ci ratio: 6.485020e-02	ci left: 2.588428e-01	ci right 2.762928e-01	k: 2675	n:10000
LPAR1   10000 perm   2 sec   (5772 perm/sec)   p_kst 2.675000e-01   p_cons 7.488000e-01   p_joint 4.014000e-01

Outputting figure to mutsig2_images.part000000000098/LPAR1.5_1107_10000_0.2675_0.7488_0.4014.png
                gene_name: LPAR1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 35 percent done.
LPAR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.005077e-02	ci left: 3.705722e-01	ci right 3.896977e-01	k: 3801	n:10000
Cons ci ratio: 9.751786e-02	ci left: 1.322754e-01	ci right 1.459356e-01	k: 1390	n:10000
KS ci ratio: 2.063679e-02	ci left: 7.747892e-01	ci right 7.910457e-01	k: 7830	n:10000
LPAR3   10000 perm   2 sec   (6182 perm/sec)   p_kst 7.830000e-01   p_cons 1.390000e-01   p_joint 3.801000e-01

Outputting figure to mutsig2_images.part000000000098/LPAR3.5_1070_10000_0.783_0.139_0.3801.png
                gene_name: LPAR3
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 37 percent done.
LPIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.395987e-02	ci left: 8.811437e-01	ci right 8.936296e-01	k: 8875	n:10000
KS ci ratio: 2.214905e-02	ci left: 7.494812e-01	ci right 7.663683e-01	k: 7580	n:10000
LPIN2   10000 perm   2 sec   (4688 perm/sec)   p_kst 7.580000e-01   p_cons 8.875000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LPIN2.5_2767_10000_0.758_0.8875_1.png
                gene_name: LPIN2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
LPIN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.445485e-01	ci left: 6.352868e-02	ci right 7.352445e-02	k: 684	n:10000
Cons ci ratio: 2.696112e-01	ci left: 1.790635e-02	ci right 2.357766e-02	k: 206	n:10000
KS ci ratio: 4.726880e-02	ci left: 3.977478e-01	ci right 4.171061e-01	k: 4074	n:10000
LPIN3   10000 perm   2 sec   (4623 perm/sec)   p_kst 4.074000e-01   p_cons 2.060000e-02   p_joint 6.840000e-02

Joint ci ratio: 8.982036e-02	ci left: 8.303132e-02	ci right 9.088925e-02	k: 1738	n:20000
Cons ci ratio: 1.867697e-01	ci left: 1.953462e-02	ci right 2.360613e-02	k: 430	n:20000
KS ci ratio: 3.274800e-02	ci left: 4.105032e-01	ci right 4.242208e-01	k: 8347	n:20000
LPIN3   20000 perm   5 sec   (4143 perm/sec)   p_kst 4.173500e-01   p_cons 2.150000e-02   p_joint 8.690000e-02

Joint ci ratio: 1.013082e-01	ci left: 4.512030e-02	ci right 4.996781e-02	k: 1425	n:30000
Cons ci ratio: 1.550290e-01	ci left: 1.924700e-02	ci right 2.251338e-02	k: 625	n:30000
KS ci ratio: 2.675503e-02	ci left: 4.114787e-01	ci right 4.226707e-01	k: 12512	n:30000
LPIN3   30000 perm   8 sec   (3984 perm/sec)   p_kst 4.170667e-01   p_cons 2.083333e-02   p_joint 4.750000e-02

Joint ci ratio: 7.266165e-02	ci left: 6.535524e-02	ci right 7.030772e-02	k: 2712	n:40000
Cons ci ratio: 1.345617e-01	ci left: 1.937545e-02	ci right 2.219473e-02	k: 830	n:40000
KS ci ratio: 2.316573e-02	ci left: 4.123364e-01	ci right 4.220256e-01	k: 16687	n:40000
LPIN3   40000 perm   10 sec   (3887 perm/sec)   p_kst 4.171750e-01   p_cons 2.075000e-02   p_joint 6.780000e-02

Joint ci ratio: 7.459447e-02	ci left: 5.038427e-02	ci right 5.430791e-02	k: 2616	n:50000
Cons ci ratio: 1.206380e-01	ci left: 1.943109e-02	ci right 2.194499e-02	k: 1033	n:50000
KS ci ratio: 2.075587e-02	ci left: 4.120141e-01	ci right 4.206756e-01	k: 20817	n:50000
LPIN3   50000 perm   13 sec   (3802 perm/sec)   p_kst 4.163400e-01   p_cons 2.066000e-02   p_joint 5.232000e-02

Joint ci ratio: 6.560177e-02	ci left: 5.432113e-02	ci right 5.802195e-02	k: 3369	n:60000
Cons ci ratio: 1.097573e-01	ci left: 1.967296e-02	ci right 2.197372e-02	k: 1248	n:60000
KS ci ratio: 1.894001e-02	ci left: 4.125845e-01	ci right 4.204902e-01	k: 24992	n:60000
LPIN3   60000 perm   16 sec   (3716 perm/sec)   p_kst 4.165333e-01   p_cons 2.080000e-02   p_joint 5.615000e-02

Joint ci ratio: 6.428283e-02	ci left: 4.881902e-02	ci right 5.207551e-02	k: 3530	n:70000
Cons ci ratio: 1.011968e-01	ci left: 1.992270e-02	ci right 2.206012e-02	k: 1468	n:70000
KS ci ratio: 1.754251e-02	ci left: 4.126732e-01	ci right 4.199909e-01	k: 29143	n:70000
LPIN3   70000 perm   19 sec   (3643 perm/sec)   p_kst 4.163286e-01   p_cons 2.097143e-02   p_joint 5.042857e-02

Joint ci ratio: 6.354169e-02	ci left: 4.396767e-02	ci right 4.686541e-02	k: 3632	n:80000
Cons ci ratio: 9.445597e-02	ci left: 2.007862e-02	ci right 2.208132e-02	k: 1685	n:80000
KS ci ratio: 1.638144e-02	ci left: 4.137424e-01	ci right 4.205886e-01	k: 33373	n:80000
LPIN3   80000 perm   22 sec   (3579 perm/sec)   p_kst 4.171625e-01   p_cons 2.106250e-02   p_joint 4.540000e-02

Outputting figure to mutsig2_images.part000000000098/LPIN3.5_2632_80000_0.41716_0.021063_0.0454.png
                gene_name: LPIN3
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 40 percent done.
LRCH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.206900e-02	ci left: 2.200047e-01	ci right 2.365539e-01	k: 2282	n:10000
Cons ci ratio: 4.449503e-02	ci left: 4.271481e-01	ci right 4.466887e-01	k: 4369	n:10000
KS ci ratio: 1.405162e-01	ci left: 6.710566e-02	ci right 7.734523e-02	k: 721	n:10000
LRCH3   10000 perm   2 sec   (5158 perm/sec)   p_kst 7.210000e-02   p_cons 4.369000e-01   p_joint 2.282000e-01

Joint ci ratio: 6.484205e-02	ci left: 1.494671e-01	ci right 1.595335e-01	k: 3089	n:20000
Cons ci ratio: 3.145591e-02	ci left: 4.301602e-01	ci right 4.439581e-01	k: 8741	n:20000
KS ci ratio: 9.992253e-02	ci left: 6.786890e-02	ci right 7.505629e-02	k: 1428	n:20000
LRCH3   20000 perm   4 sec   (4615 perm/sec)   p_kst 7.140000e-02   p_cons 4.370500e-01   p_joint 1.544500e-01

Outputting figure to mutsig2_images.part000000000098/LRCH3.5_2215_20000_0.0714_0.43705_0.15445.png
                gene_name: LRCH3
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 41 percent done.
LRIG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.055178e-02	ci left: 7.762076e-01	ci right 7.924264e-01	k: 7844	n:10000
Cons ci ratio: 1.915886e-02	ci left: 7.993290e-01	ci right 8.148917e-01	k: 8072	n:10000
KS ci ratio: 2.681507e-02	ci left: 6.719646e-01	ci right 6.903298e-01	k: 6812	n:10000
LRIG1   10000 perm   2 sec   (4421 perm/sec)   p_kst 6.812000e-01   p_cons 8.072000e-01   p_joint 7.844000e-01

Outputting figure to mutsig2_images.part000000000098/LRIG1.5_3358_10000_0.6812_0.8072_0.7844.png
                gene_name: LRIG1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 43 percent done.
LRP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.562896e-02	ci left: 3.224721e-01	ci right 3.410260e-01	k: 3317	n:10000
Cons ci ratio: 1.931867e-02	ci left: 7.966903e-01	ci right 8.123319e-01	k: 8046	n:10000
KS ci ratio: 1.141993e-01	ci left: 9.934967e-02	ci right 1.114813e-01	k: 1053	n:10000
LRP10   10000 perm   2 sec   (5466 perm/sec)   p_kst 1.053000e-01   p_cons 8.046000e-01   p_joint 3.317000e-01

Joint ci ratio: 6.306507e-02	ci left: 1.567700e-01	ci right 1.670285e-01	k: 3237	n:20000
Cons ci ratio: 1.454721e-02	ci left: 7.782812e-01	ci right 7.897361e-01	k: 15681	n:20000
KS ci ratio: 8.140165e-02	ci left: 9.965488e-02	ci right 1.081607e-01	k: 2077	n:20000
LRP10   20000 perm   4 sec   (4857 perm/sec)   p_kst 1.038500e-01   p_cons 7.840500e-01   p_joint 1.618500e-01

Outputting figure to mutsig2_images.part000000000098/LRP10.5_2170_20000_0.10385_0.78405_0.16185.png
                gene_name: LRP10
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 44 percent done.
LRP2BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.897433e-02	ci left: 3.808216e-01	ci right 4.000423e-01	k: 3904	n:10000
Cons ci ratio: 4.877944e-02	ci left: 3.827127e-01	ci right 4.019500e-01	k: 3923	n:10000
KS ci ratio: 5.800771e-02	ci left: 3.043136e-01	ci right 3.225952e-01	k: 3134	n:10000
LRP2BP   10000 perm   2 sec   (5698 perm/sec)   p_kst 3.134000e-01   p_cons 3.923000e-01   p_joint 3.904000e-01

Outputting figure to mutsig2_images.part000000000098/LRP2BP.5_1076_10000_0.3134_0.3923_0.3904.png
                gene_name: LRP2BP
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 46 percent done.
LRP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.683977e-02	ci left: 6.715616e-01	ci right 6.899330e-01	k: 6808	n:10000
Cons ci ratio: 7.144074e-02	ci left: 2.230647e-01	ci right 2.396920e-01	k: 2313	n:10000
KS ci ratio: 2.426275e-02	ci left: 7.141148e-01	ci right 7.317552e-01	k: 7230	n:10000
LRP5   10000 perm   2 sec   (4350 perm/sec)   p_kst 7.230000e-01   p_cons 2.313000e-01   p_joint 6.808000e-01

Outputting figure to mutsig2_images.part000000000098/LRP5.5_4940_10000_0.723_0.2313_0.6808.png
                gene_name: LRP5
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 48 percent done.
LRPPRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.341629e-02	ci left: 7.282528e-01	ci right 7.456090e-01	k: 7370	n:10000
Cons ci ratio: 1.529596e-02	ci left: 8.611064e-01	ci right 8.744786e-01	k: 8679	n:10000
KS ci ratio: 3.416833e-02	ci left: 5.584231e-01	ci right 5.779372e-01	k: 5682	n:10000
LRPPRC   10000 perm   2 sec   (4352 perm/sec)   p_kst 5.682000e-01   p_cons 8.679000e-01   p_joint 7.370000e-01

Outputting figure to mutsig2_images.part000000000098/LRPPRC.5_4337_10000_0.5682_0.8679_0.737.png
                gene_name: LRPPRC
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 49 percent done.
LONP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.301200e-01	ci left: 7.776183e-02	ci right 8.868240e-02	k: 831	n:10000
Cons ci ratio: 1.493392e-02	ci left: 8.666216e-01	ci right 8.797602e-01	k: 8733	n:10000
KS ci ratio: 2.613506e-01	ci left: 1.912136e-02	ci right 2.496169e-02	k: 219	n:10000
LONP1   10000 perm   2 sec   (5160 perm/sec)   p_kst 2.190000e-02   p_cons 8.733000e-01   p_joint 8.310000e-02

Joint ci ratio: 1.094202e-01	ci left: 5.699136e-02	ci right 6.363718e-02	k: 1205	n:20000
Cons ci ratio: 1.035519e-02	ci left: 8.729270e-01	ci right 8.820629e-01	k: 17551	n:20000
KS ci ratio: 1.824882e-01	ci left: 2.048931e-02	ci right 2.465110e-02	k: 450	n:20000
LONP1   20000 perm   4 sec   (4588 perm/sec)   p_kst 2.250000e-02   p_cons 8.775500e-01   p_joint 6.025000e-02

Joint ci ratio: 8.461250e-02	ci left: 6.393474e-02	ci right 6.961617e-02	k: 2002	n:30000
Cons ci ratio: 8.729750e-03	ci left: 8.666481e-01	ci right 8.742800e-01	k: 26115	n:30000
KS ci ratio: 1.493980e-01	ci left: 2.075518e-02	ci right 2.413818e-02	k: 672	n:30000
LONP1   30000 perm   7 sec   (4382 perm/sec)   p_kst 2.240000e-02   p_cons 8.705000e-01   p_joint 6.673333e-02

Joint ci ratio: 8.138007e-02	ci left: 5.258955e-02	ci right 5.707536e-02	k: 2192	n:40000
Cons ci ratio: 7.336329e-03	ci left: 8.738679e-01	ci right 8.803273e-01	k: 35085	n:40000
KS ci ratio: 1.296295e-01	ci left: 2.089945e-02	ci right 2.382047e-02	k: 893	n:40000
LONP1   40000 perm   9 sec   (4250 perm/sec)   p_kst 2.232500e-02   p_cons 8.771250e-01   p_joint 5.480000e-02

Joint ci ratio: 7.643028e-02	ci left: 4.806656e-02	ci right 5.190590e-02	k: 2498	n:50000
Cons ci ratio: 6.594121e-03	ci left: 8.731399e-01	ci right 8.789364e-01	k: 43803	n:50000
KS ci ratio: 1.160241e-01	ci left: 2.102354e-02	ci right 2.363233e-02	k: 1115	n:50000
LONP1   50000 perm   12 sec   (4141 perm/sec)   p_kst 2.230000e-02   p_cons 8.760600e-01   p_joint 4.996000e-02

Joint ci ratio: 6.770256e-02	ci left: 5.112231e-02	ci right 5.472108e-02	k: 3174	n:60000
Cons ci ratio: 6.034592e-03	ci left: 8.728486e-01	ci right 8.781484e-01	k: 52531	n:60000
KS ci ratio: 1.066176e-01	ci left: 2.085737e-02	ci right 2.322251e-02	k: 1321	n:60000
LONP1   60000 perm   15 sec   (4050 perm/sec)   p_kst 2.201667e-02   p_cons 8.755167e-01   p_joint 5.290000e-02

Joint ci ratio: 5.142609e-02	ci left: 7.466848e-02	ci right 7.862384e-02	k: 5364	n:70000
Cons ci ratio: 5.571228e-03	ci left: 8.736654e-01	ci right 8.785605e-01	k: 61329	n:70000
KS ci ratio: 1.014085e-01	ci left: 1.983911e-02	ci right 2.197229e-02	k: 1462	n:70000
LONP1   70000 perm   18 sec   (3972 perm/sec)   p_kst 2.088571e-02   p_cons 8.761286e-01   p_joint 7.662857e-02

Joint ci ratio: 4.654974e-02	ci left: 7.952645e-02	ci right 8.332897e-02	k: 6513	n:80000
Cons ci ratio: 5.205770e-03	ci left: 8.740616e-01	ci right 8.786360e-01	k: 70109	n:80000
KS ci ratio: 9.448459e-02	ci left: 2.006641e-02	ci right 2.206854e-02	k: 1684	n:80000
LONP1   80000 perm   21 sec   (3900 perm/sec)   p_kst 2.105000e-02   p_cons 8.763625e-01   p_joint 8.141250e-02

Outputting figure to mutsig2_images.part000000000098/LONP1.4_2952_80000_0.02105_0.87636_0.081412.png
                gene_name: LONP1
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.083 

Current progress: 51 percent done.
LONP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.209660e-02	ci left: 5.889150e-01	ci right 6.082275e-01	k: 5986	n:10000
Cons ci ratio: 2.799546e-02	ci left: 6.528339e-01	ci right 6.714715e-01	k: 6622	n:10000
KS ci ratio: 4.637034e-02	ci left: 4.070126e-01	ci right 4.264360e-01	k: 4167	n:10000
LONP2   10000 perm   2 sec   (5056 perm/sec)   p_kst 4.167000e-01   p_cons 6.622000e-01   p_joint 5.986000e-01

Outputting figure to mutsig2_images.part000000000098/LONP2.4_2619_10000_0.4167_0.6622_0.5986.png
                gene_name: LONP2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 52 percent done.
LONRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
Cons ci ratio: 2.895240e-01	ci left: 1.539246e-02	ci right 2.069361e-02	k: 179	n:10000
KS ci ratio: 5.177092e-01	ci left: 4.232871e-03	ci right 7.265981e-03	k: 56	n:10000
LONRF1   10000 perm   2 sec   (5188 perm/sec)   p_kst 5.600000e-03   p_cons 1.790000e-02   p_joint 9.300000e-03

Joint ci ratio: 1.901799e-01	ci left: 1.881935e-02	ci right 2.282166e-02	k: 415	n:20000
Cons ci ratio: 2.018924e-01	ci left: 1.663022e-02	ci right 2.041161e-02	k: 369	n:20000
KS ci ratio: 3.693575e-01	ci left: 4.567803e-03	ci right 6.679840e-03	k: 111	n:20000
LONRF1   20000 perm   4 sec   (4673 perm/sec)   p_kst 5.550000e-03   p_cons 1.845000e-02   p_joint 2.075000e-02

Joint ci ratio: 2.183043e-01	ci left: 9.472069e-03	ci right 1.182415e-02	k: 318	n:30000
Cons ci ratio: 1.659150e-01	ci left: 1.674946e-02	ci right 1.981151e-02	k: 547	n:30000
KS ci ratio: 3.034031e-01	ci left: 4.694616e-03	ci right 6.403287e-03	k: 165	n:30000
LONRF1   30000 perm   7 sec   (4444 perm/sec)   p_kst 5.500000e-03   p_cons 1.823333e-02   p_joint 1.060000e-02

Joint ci ratio: 2.006657e-01	ci left: 8.501350e-03	ci right 1.042088e-02	k: 377	n:40000
Cons ci ratio: 1.449724e-01	ci left: 1.664736e-02	ci right 1.927329e-02	k: 717	n:40000
KS ci ratio: 2.710921e-01	ci left: 4.495471e-03	ci right 5.927807e-03	k: 207	n:40000
LONRF1   40000 perm   9 sec   (4303 perm/sec)   p_kst 5.175000e-03   p_cons 1.792500e-02   p_joint 9.425000e-03

Joint ci ratio: 1.795772e-01	ci left: 8.591869e-03	ci right 1.030581e-02	k: 471	n:50000
Cons ci ratio: 1.240500e-01	ci left: 1.836412e-02	ci right 2.081210e-02	k: 978	n:50000
KS ci ratio: 2.429429e-01	ci left: 4.550863e-03	ci right 5.827623e-03	k: 258	n:50000
LONRF1   50000 perm   12 sec   (4150 perm/sec)   p_kst 5.160000e-03   p_cons 1.956000e-02   p_joint 9.420000e-03

Joint ci ratio: 1.960856e-01	ci left: 5.967726e-03	ci right 7.280681e-03	k: 396	n:60000
Cons ci ratio: 1.134290e-01	ci left: 1.840855e-02	ci right 2.063827e-02	k: 1170	n:60000
KS ci ratio: 2.217041e-01	ci left: 4.608718e-03	ci right 5.773267e-03	k: 310	n:60000
LONRF1   60000 perm   15 sec   (4063 perm/sec)   p_kst 5.166667e-03   p_cons 1.950000e-02   p_joint 6.600000e-03

Joint ci ratio: 1.900188e-01	ci left: 5.468535e-03	ci right 6.630127e-03	k: 422	n:70000
Cons ci ratio: 1.043227e-01	ci left: 1.873902e-02	ci right 2.081535e-02	k: 1383	n:70000
KS ci ratio: 2.078167e-01	ci left: 4.531583e-03	ci right 5.595794e-03	k: 353	n:70000
LONRF1   70000 perm   18 sec   (3982 perm/sec)   p_kst 5.042857e-03   p_cons 1.975714e-02   p_joint 6.028571e-03

Joint ci ratio: 1.763623e-01	ci left: 5.596065e-03	ci right 6.690214e-03	k: 490	n:80000
Cons ci ratio: 1.019349e-01	ci left: 1.722402e-02	ci right 1.908616e-02	k: 1451	n:80000
KS ci ratio: 1.938111e-01	ci left: 4.594371e-03	ci right 5.592039e-03	k: 406	n:80000
LONRF1   80000 perm   20 sec   (3909 perm/sec)   p_kst 5.075000e-03   p_cons 1.813750e-02   p_joint 6.125000e-03

Joint ci ratio: 1.724084e-01	ci left: 5.218592e-03	ci right 6.213673e-03	k: 513	n:90000
Cons ci ratio: 9.588123e-02	ci left: 1.735838e-02	ci right 1.911732e-02	k: 1640	n:90000
KS ci ratio: 1.809237e-01	ci left: 4.719339e-03	ci right 5.668539e-03	k: 466	n:90000
LONRF1   90000 perm   23 sec   (3838 perm/sec)   p_kst 5.177778e-03   p_cons 1.822222e-02   p_joint 5.700000e-03

Joint ci ratio: 1.875394e-01	ci left: 3.942007e-03	ci right 4.767149e-03	k: 434	n:100000
Cons ci ratio: 9.153362e-02	ci left: 1.718498e-02	ci right 1.884315e-02	k: 1800	n:100000
KS ci ratio: 1.703065e-01	ci left: 4.821071e-03	ci right 5.727988e-03	k: 526	n:100000
LONRF1   100000 perm   27 sec   (3773 perm/sec)   p_kst 5.260000e-03   p_cons 1.800000e-02   p_joint 4.340000e-03

Joint ci ratio: 1.846175e-01	ci left: 3.704944e-03	ci right 4.467024e-03	k: 448	n:110000
Cons ci ratio: 8.750134e-02	ci left: 1.713355e-02	ci right 1.871020e-02	k: 1970	n:110000
KS ci ratio: 1.623387e-01	ci left: 4.844567e-03	ci right 5.709106e-03	k: 579	n:110000
LONRF1   110000 perm   30 sec   (3705 perm/sec)   p_kst 5.263636e-03   p_cons 1.790909e-02   p_joint 4.072727e-03

Joint ci ratio: 2.241722e-01	ci left: 2.256834e-03	ci right 2.834293e-03	k: 304	n:120000
Cons ci ratio: 8.381950e-02	ci left: 1.714917e-02	ci right 1.865759e-02	k: 2147	n:120000
KS ci ratio: 1.485851e-01	ci left: 5.338039e-03	ci right 6.202775e-03	k: 691	n:120000
LONRF1   120000 perm   33 sec   (3636 perm/sec)   p_kst 5.758333e-03   p_cons 1.789167e-02   p_joint 2.533333e-03

Joint ci ratio: 2.155140e-01	ci left: 2.264954e-03	ci right 2.819147e-03	k: 329	n:130000
Cons ci ratio: 8.053119e-02	ci left: 1.717864e-02	ci right 1.862760e-02	k: 2326	n:130000
KS ci ratio: 1.414027e-01	ci left: 5.461207e-03	ci right 6.299525e-03	k: 763	n:130000
LONRF1   130000 perm   36 sec   (3578 perm/sec)   p_kst 5.869231e-03   p_cons 1.789231e-02   p_joint 2.530769e-03

Joint ci ratio: 2.069126e-01	ci left: 2.292599e-03	ci right 2.828335e-03	k: 357	n:140000
Cons ci ratio: 7.750739e-02	ci left: 1.724693e-02	ci right 1.864456e-02	k: 2511	n:140000
KS ci ratio: 1.359081e-01	ci left: 5.505523e-03	ci right 6.315147e-03	k: 826	n:140000
LONRF1   140000 perm   40 sec   (3522 perm/sec)   p_kst 5.900000e-03   p_cons 1.793571e-02   p_joint 2.550000e-03

Joint ci ratio: 2.108022e-01	ci left: 2.057598e-03	ci right 2.548624e-03	k: 344	n:150000
Cons ci ratio: 7.485702e-02	ci left: 1.728083e-02	ci right 1.863123e-02	k: 2692	n:150000
KS ci ratio: 1.301283e-01	ci left: 5.621876e-03	ci right 6.410736e-03	k: 901	n:150000
LONRF1   150000 perm   43 sec   (3470 perm/sec)   p_kst 6.006667e-03   p_cons 1.794667e-02   p_joint 2.293333e-03

Joint ci ratio: 1.128774e-01	ci left: 7.058768e-03	ci right 7.909225e-03	k: 1196	n:160000
Cons ci ratio: 7.233314e-02	ci left: 1.737259e-02	ci right 1.868246e-02	k: 2883	n:160000
KS ci ratio: 1.261369e-01	ci left: 5.621390e-03	ci right 6.384178e-03	k: 959	n:160000
LONRF1   160000 perm   47 sec   (3419 perm/sec)   p_kst 5.993750e-03   p_cons 1.801875e-02   p_joint 7.475000e-03

Joint ci ratio: 1.098039e-01	ci left: 7.032402e-03	ci right 7.855118e-03	k: 1264	n:170000
Cons ci ratio: 7.043433e-02	ci left: 1.726346e-02	ci right 1.852953e-02	k: 3041	n:170000
KS ci ratio: 1.222503e-01	ci left: 5.644100e-03	ci right 6.384663e-03	k: 1021	n:170000
LONRF1   170000 perm   51 sec   (3362 perm/sec)   p_kst 6.005882e-03   p_cons 1.788824e-02   p_joint 7.435294e-03

Joint ci ratio: 1.339784e-01	ci left: 4.416106e-03	ci right 5.055561e-03	k: 851	n:180000
Cons ci ratio: 6.848172e-02	ci left: 1.726517e-02	ci right 1.849487e-02	k: 3217	n:180000
KS ci ratio: 1.187021e-01	ci left: 5.664607e-03	ci right 6.384775e-03	k: 1083	n:180000
LONRF1   180000 perm   54 sec   (3316 perm/sec)   p_kst 6.016667e-03   p_cons 1.787222e-02   p_joint 4.727778e-03

Joint ci ratio: 1.329799e-01	ci left: 4.249791e-03	ci right 4.860213e-03	k: 864	n:190000
Cons ci ratio: 6.677319e-02	ci left: 1.722055e-02	ci right 1.841528e-02	k: 3384	n:190000
KS ci ratio: 1.154460e-01	ci left: 5.683234e-03	ci right 6.384598e-03	k: 1145	n:190000
LONRF1   190000 perm   58 sec   (3268 perm/sec)   p_kst 6.026316e-03   p_cons 1.781053e-02   p_joint 4.547368e-03

Joint ci ratio: 1.373701e-01	ci left: 3.776366e-03	ci right 4.338158e-03	k: 810	n:200000
Cons ci ratio: 6.513979e-02	ci left: 1.720533e-02	ci right 1.836871e-02	k: 3556	n:200000
KS ci ratio: 1.126788e-01	ci left: 5.675940e-03	ci right 6.358497e-03	k: 1202	n:200000
LONRF1   200000 perm   62 sec   (3223 perm/sec)   p_kst 6.010000e-03   p_cons 1.778000e-02   p_joint 4.050000e-03

Joint ci ratio: 1.271625e-01	ci left: 4.218213e-03	ci right 4.795595e-03	k: 945	n:210000
Cons ci ratio: 6.348217e-02	ci left: 1.726689e-02	ci right 1.840362e-02	k: 3744	n:210000
KS ci ratio: 1.098386e-01	ci left: 5.697312e-03	ci right 6.364053e-03	k: 1265	n:210000
LONRF1   210000 perm   66 sec   (3176 perm/sec)   p_kst 6.023810e-03   p_cons 1.782857e-02   p_joint 4.500000e-03

Joint ci ratio: 1.243680e-01	ci left: 4.215782e-03	ci right 4.779214e-03	k: 988	n:220000
Cons ci ratio: 6.217068e-02	ci left: 1.719786e-02	ci right 1.830581e-02	k: 3904	n:220000
KS ci ratio: 1.073657e-01	ci left: 5.699241e-03	ci right 6.350241e-03	k: 1324	n:220000
LONRF1   220000 perm   70 sec   (3134 perm/sec)   p_kst 6.018182e-03   p_cons 1.774545e-02   p_joint 4.490909e-03

Joint ci ratio: 1.216316e-01	ci left: 4.222120e-03	ci right 4.773091e-03	k: 1033	n:230000
Cons ci ratio: 6.089912e-02	ci left: 1.715646e-02	ci right 1.823835e-02	k: 4069	n:230000
KS ci ratio: 1.050144e-01	ci left: 5.705389e-03	ci right 6.341939e-03	k: 1384	n:230000
LONRF1   230000 perm   74 sec   (3088 perm/sec)   p_kst 6.017391e-03   p_cons 1.769130e-02   p_joint 4.491304e-03

Joint ci ratio: 1.195702e-01	ci left: 4.191669e-03	ci right 4.728740e-03	k: 1069	n:240000
Cons ci ratio: 5.958089e-02	ci left: 1.718853e-02	ci right 1.824816e-02	k: 4251	n:240000
KS ci ratio: 1.030265e-01	ci left: 5.686808e-03	ci right 6.308546e-03	k: 1438	n:240000
LONRF1   240000 perm   79 sec   (3048 perm/sec)   p_kst 5.991667e-03   p_cons 1.771250e-02   p_joint 4.454167e-03

Joint ci ratio: 1.166604e-01	ci left: 4.233626e-03	ci right 4.761963e-03	k: 1123	n:250000
Cons ci ratio: 5.851963e-02	ci left: 1.711575e-02	ci right 1.815147e-02	k: 4407	n:250000
KS ci ratio: 1.007409e-01	ci left: 5.716613e-03	ci right 6.326924e-03	k: 1504	n:250000
LONRF1   250000 perm   83 sec   (3009 perm/sec)   p_kst 6.016000e-03   p_cons 1.762800e-02   p_joint 4.492000e-03

Joint ci ratio: 9.655081e-02	ci left: 5.995707e-03	ci right 6.607685e-03	k: 1637	n:260000
Cons ci ratio: 5.721397e-02	ci left: 1.722696e-02	ci right 1.824537e-02	k: 4610	n:260000
KS ci ratio: 1.007863e-01	ci left: 5.492962e-03	ci right 6.079675e-03	k: 1503	n:260000
LONRF1   260000 perm   88 sec   (2971 perm/sec)   p_kst 5.780769e-03   p_cons 1.773077e-02   p_joint 6.296154e-03

Joint ci ratio: 9.534003e-02	ci left: 5.925456e-03	ci right 6.522255e-03	k: 1679	n:270000
Cons ci ratio: 5.608693e-02	ci left: 1.727171e-02	ci right 1.827201e-02	k: 4797	n:270000
KS ci ratio: 9.944316e-02	ci left: 5.437561e-03	ci right 6.010164e-03	k: 1544	n:270000
LONRF1   270000 perm   92 sec   (2934 perm/sec)   p_kst 5.718519e-03   p_cons 1.776667e-02   p_joint 6.218519e-03

Outputting figure to mutsig2_images.part000000000098/LONRF1.4_2370_270000_0.0057185_0.017767_0.0062185.png
                gene_name: LONRF1
               theta_stop: 0.099 
                    nperm: 270000 
                     p_ks: 0.0057 
        ci_ks_bounds_left: 0.0054 
       ci_ks_bounds_right: 0.0060 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.0062 
     ci_joint_bounds_left: 0.0059 
    ci_joint_bounds_right: 0.0065 

Current progress: 54 percent done.
LPAR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.786111e-02	ci left: 3.917725e-01	ci right 4.110850e-01	k: 4014	n:10000
Cons ci ratio: 4.492253e-02	ci left: 4.224616e-01	ci right 4.419779e-01	k: 4322	n:10000
KS ci ratio: 4.431467e-02	ci left: 4.291426e-01	ci right 4.486930e-01	k: 4389	n:10000
LPAR4   10000 perm   2 sec   (5813 perm/sec)   p_kst 4.389000e-01   p_cons 4.322000e-01   p_joint 4.014000e-01

Outputting figure to mutsig2_images.part000000000098/LPAR4.4_1117_10000_0.4389_0.4322_0.4014.png
                gene_name: LPAR4
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 56 percent done.
LRIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.288380e-02	ci left: 5.771752e-01	ci right 5.965742e-01	k: 5869	n:10000
Cons ci ratio: 5.561642e-02	ci left: 3.225714e-01	ci right 3.411266e-01	k: 3318	n:10000
KS ci ratio: 3.968308e-02	ci left: 4.839539e-01	ci right 5.036497e-01	k: 4938	n:10000
LRIT1   10000 perm   2 sec   (5759 perm/sec)   p_kst 4.938000e-01   p_cons 3.318000e-01   p_joint 5.869000e-01

Outputting figure to mutsig2_images.part000000000098/LRIT1.4_1888_10000_0.4938_0.3318_0.5869.png
                gene_name: LRIT1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 57 percent done.
LRMP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.625495e-02	ci left: 6.811333e-01	ci right 6.993558e-01	k: 6903	n:10000
KS ci ratio: 2.760228e-02	ci left: 6.591754e-01	ci right 6.777264e-01	k: 6685	n:10000
LRMP   10000 perm   2 sec   (5249 perm/sec)   p_kst 6.685000e-01   p_cons 6.903000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LRMP.4_1568_10000_0.6685_0.6903_1.png
                gene_name: LRMP
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
LRP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.483020e-01	ci left: 6.043844e-02	ci right 7.021664e-02	k: 652	n:10000
Cons ci ratio: 3.209154e-01	ci left: 1.234131e-02	ci right 1.714746e-02	k: 146	n:10000
KS ci ratio: 2.393597e-02	ci left: 7.195667e-01	ci right 7.371001e-01	k: 7284	n:10000
LRP8   10000 perm   2 sec   (5193 perm/sec)   p_kst 7.284000e-01   p_cons 1.460000e-02   p_joint 6.520000e-02

Joint ci ratio: 1.390823e-01	ci left: 3.553751e-02	ci right 4.089781e-02	k: 763	n:20000
Cons ci ratio: 2.184120e-01	ci left: 1.411743e-02	ci right 1.762537e-02	k: 316	n:20000
KS ci ratio: 1.679730e-02	ci left: 7.251989e-01	ci right 7.375338e-01	k: 14628	n:20000
LRP8   20000 perm   4 sec   (4645 perm/sec)   p_kst 7.314000e-01   p_cons 1.580000e-02   p_joint 3.815000e-02

Joint ci ratio: 1.030657e-01	ci left: 4.362438e-02	ci right 4.839737e-02	k: 1379	n:30000
Cons ci ratio: 1.771081e-01	ci left: 1.464237e-02	ci right 1.751912e-02	k: 481	n:30000
KS ci ratio: 1.366965e-02	ci left: 7.276531e-01	ci right 7.377018e-01	k: 21981	n:30000
LRP8   30000 perm   7 sec   (4352 perm/sec)   p_kst 7.327000e-01   p_cons 1.603333e-02   p_joint 4.596667e-02

Joint ci ratio: 7.735556e-02	ci left: 5.798672e-02	ci right 6.267736e-02	k: 2412	n:40000
Cons ci ratio: 1.517883e-01	ci left: 1.515398e-02	ci right 1.766693e-02	k: 655	n:40000
KS ci ratio: 1.180203e-02	ci left: 7.295399e-01	ci right 7.382261e-01	k: 29356	n:40000
LRP8   40000 perm   10 sec   (4153 perm/sec)   p_kst 7.339000e-01   p_cons 1.637500e-02   p_joint 6.030000e-02

Joint ci ratio: 7.413228e-02	ci left: 5.099334e-02	ci right 5.493876e-02	k: 2647	n:50000
Cons ci ratio: 1.375658e-01	ci left: 1.487971e-02	ci right 1.709700e-02	k: 798	n:50000
KS ci ratio: 1.061013e-02	ci left: 7.279939e-01	ci right 7.357792e-01	k: 36595	n:50000
LRP8   50000 perm   12 sec   (4066 perm/sec)   p_kst 7.319000e-01   p_cons 1.596000e-02   p_joint 5.294000e-02

Joint ci ratio: 5.538081e-02	ci left: 7.492839e-02	ci right 7.921263e-02	k: 4623	n:60000
Cons ci ratio: 1.259678e-01	ci left: 1.488193e-02	ci right 1.689862e-02	k: 952	n:60000
KS ci ratio: 9.691862e-03	ci left: 7.280850e-01	ci right 7.351925e-01	k: 43899	n:60000
LRP8   60000 perm   15 sec   (3982 perm/sec)   p_kst 7.316500e-01   p_cons 1.586667e-02   p_joint 7.705000e-02

Joint ci ratio: 5.545381e-02	ci left: 6.477794e-02	ci right 6.848666e-02	k: 4663	n:70000
Cons ci ratio: 1.166681e-01	ci left: 1.494469e-02	ci right 1.681004e-02	k: 1110	n:70000
KS ci ratio: 8.998228e-03	ci left: 7.272395e-01	ci right 7.338271e-01	k: 51138	n:70000
LRP8   70000 perm   18 sec   (3909 perm/sec)   p_kst 7.305429e-01   p_cons 1.585714e-02   p_joint 6.661429e-02

Joint ci ratio: 5.887000e-02	ci left: 5.096449e-02	ci right 5.406807e-02	k: 4200	n:80000
Cons ci ratio: 1.093395e-01	ci left: 1.494722e-02	ci right 1.668815e-02	k: 1264	n:80000
KS ci ratio: 8.426278e-03	ci left: 7.270219e-01	ci right 7.331864e-01	k: 58409	n:80000
LRP8   80000 perm   21 sec   (3845 perm/sec)   p_kst 7.301125e-01   p_cons 1.580000e-02   p_joint 5.250000e-02

Joint ci ratio: 5.569078e-02	ci left: 5.072282e-02	ci right 5.363946e-02	k: 4695	n:90000
Cons ci ratio: 1.034609e-01	ci left: 1.488710e-02	ci right 1.652211e-02	k: 1412	n:90000
KS ci ratio: 7.940371e-03	ci left: 7.273987e-01	ci right 7.332086e-01	k: 65728	n:90000
LRP8   90000 perm   24 sec   (3778 perm/sec)   p_kst 7.303111e-01   p_cons 1.568889e-02   p_joint 5.216667e-02

Joint ci ratio: 5.629823e-02	ci left: 4.493671e-02	ci right 4.754969e-02	k: 4623	n:100000
Cons ci ratio: 9.834280e-02	ci left: 1.487028e-02	ci right 1.641799e-02	k: 1563	n:100000
KS ci ratio: 7.532348e-03	ci left: 7.275778e-01	ci right 7.330888e-01	k: 73034	n:100000
LRP8   100000 perm   27 sec   (3712 perm/sec)   p_kst 7.303400e-01   p_cons 1.563000e-02   p_joint 4.623000e-02

Outputting figure to mutsig2_images.part000000000098/LRP8.4_2968_100000_0.73034_0.01563_0.04623.png
                gene_name: LRP8
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.048 

Current progress: 60 percent done.
LRRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.156183e-02	ci left: 4.608768e-01	ci right 4.805403e-01	k: 4707	n:10000
Cons ci ratio: 5.519279e-02	ci left: 3.259469e-01	ci right 3.445492e-01	k: 3352	n:10000
KS ci ratio: 5.534169e-02	ci left: 3.247555e-01	ci right 3.433413e-01	k: 3340	n:10000
LRRC1   10000 perm   2 sec   (5243 perm/sec)   p_kst 3.340000e-01   p_cons 3.352000e-01   p_joint 4.707000e-01

Outputting figure to mutsig2_images.part000000000098/LRRC1.4_1631_10000_0.334_0.3352_0.4707.png
                gene_name: LRRC1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 62 percent done.
LOC728819
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.985807e-02	ci left: 4.817552e-01	ci right 5.014497e-01	k: 4916	n:10000
Cons ci ratio: 7.695773e-02	ci left: 1.980113e-01	ci right 2.139604e-01	k: 2059	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
LOC728819   10000 perm   2 sec   (6136 perm/sec)   p_kst 1   p_cons 2.059000e-01   p_joint 4.916000e-01

Outputting figure to mutsig2_images.part000000000098/LOC728819.3_952_10000_1_0.2059_0.4916.png
                gene_name: LOC728819
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 63 percent done.
LPAR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.996421e-02	ci left: 2.903338e-01	ci right 3.083832e-01	k: 2993	n:10000
Cons ci ratio: 1.246431e-01	ci left: 8.436377e-02	ci right 9.567638e-02	k: 899	n:10000
KS ci ratio: 1.857837e-02	ci left: 8.088732e-01	ci right 8.241419e-01	k: 8166	n:10000
LPAR6   10000 perm   2 sec   (6376 perm/sec)   p_kst 8.166000e-01   p_cons 8.990000e-02   p_joint 2.993000e-01

Joint ci ratio: 3.545871e-02	ci left: 3.725185e-01	ci right 3.860166e-01	k: 7585	n:20000
Cons ci ratio: 8.590112e-02	ci left: 9.023491e-02	ci right 9.838348e-02	k: 1885	n:20000
KS ci ratio: 1.290794e-02	ci left: 8.164248e-01	ci right 8.270815e-01	k: 16436	n:20000
LPAR6   20000 perm   4 sec   (5410 perm/sec)   p_kst 8.218000e-01   p_cons 9.425000e-02   p_joint 3.792500e-01

Outputting figure to mutsig2_images.part000000000098/LPAR6.3_1039_20000_0.8218_0.09425_0.37925.png
                gene_name: LPAR6
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 65 percent done.
LPCAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
Cons ci ratio: 1.592875e-01	ci left: 5.253552e-02	ci right 6.172460e-02	k: 570	n:10000
KS ci ratio: 1.737018e-02	ci left: 8.284934e-01	ci right 8.431104e-01	k: 8359	n:10000
LPCAT1   10000 perm   2 sec   (5772 perm/sec)   p_kst 8.359000e-01   p_cons 5.700000e-02   p_joint 1.277000e-01

Joint ci ratio: 4.882997e-02	ci left: 2.377131e-01	ci right 2.496615e-01	k: 4873	n:20000
Cons ci ratio: 1.072598e-01	ci left: 5.923278e-02	ci right 6.599506e-02	k: 1251	n:20000
KS ci ratio: 1.226632e-02	ci left: 8.310477e-01	ci right 8.413544e-01	k: 16725	n:20000
LPCAT1   20000 perm   4 sec   (5023 perm/sec)   p_kst 8.362500e-01   p_cons 6.255000e-02   p_joint 2.436500e-01

Joint ci ratio: 4.123915e-02	ci left: 2.266704e-01	ci right 2.362483e-01	k: 6943	n:30000
Cons ci ratio: 8.775248e-02	ci left: 5.962343e-02	ci right 6.512837e-02	k: 1870	n:30000
KS ci ratio: 9.967070e-03	ci left: 8.333435e-01	ci right 8.417243e-01	k: 25127	n:30000
LPCAT1   30000 perm   6 sec   (4742 perm/sec)   p_kst 8.375667e-01   p_cons 6.233333e-02   p_joint 2.314333e-01

Outputting figure to mutsig2_images.part000000000098/LPCAT1.3_1661_30000_0.83757_0.062333_0.23143.png
                gene_name: LPCAT1
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 67 percent done.
LPHN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.208946e-02	ci left: 2.199059e-01	ci right 2.364527e-01	k: 2281	n:10000
Cons ci ratio: 1.716727e-02	ci left: 8.317498e-01	ci right 8.462521e-01	k: 8391	n:10000
KS ci ratio: 1.062509e-01	ci left: 1.133992e-01	ci right 1.262232e-01	k: 1197	n:10000
LPHN1   10000 perm   2 sec   (4416 perm/sec)   p_kst 1.197000e-01   p_cons 8.391000e-01   p_joint 2.281000e-01

Joint ci ratio: 5.331969e-02	ci left: 2.070457e-01	ci right 2.184379e-01	k: 4254	n:20000
Cons ci ratio: 1.213173e-02	ci left: 8.340853e-01	ci right 8.443158e-01	k: 16785	n:20000
KS ci ratio: 7.634997e-02	ci left: 1.119863e-01	ci right 1.209255e-01	k: 2328	n:20000
LPHN1   20000 perm   5 sec   (3985 perm/sec)   p_kst 1.164000e-01   p_cons 8.392500e-01   p_joint 2.127000e-01

Outputting figure to mutsig2_images.part000000000098/LPHN1.3_4517_20000_0.1164_0.83925_0.2127.png
                gene_name: LPHN1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 68 percent done.
LPO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.258492e-02	ci left: 4.487971e-01	ci right 4.684270e-01	k: 4586	n:10000
KS ci ratio: 4.807086e-02	ci left: 3.896815e-01	ci right 4.089772e-01	k: 3993	n:10000
LPO   10000 perm   2 sec   (6027 perm/sec)   p_kst 3.993000e-01   p_cons 4.586000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LPO.3_2187_10000_0.3993_0.4586_1.png
                gene_name: LPO
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
LPP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.401300e-02	ci left: 3.355799e-01	ci right 3.543105e-01	k: 3449	n:10000
Cons ci ratio: 6.400080e-02	ci left: 2.639885e-01	ci right 2.815440e-01	k: 2727	n:10000
KS ci ratio: 5.603282e-02	ci left: 3.192957e-01	ci right 3.378043e-01	k: 3285	n:10000
LPP   10000 perm   2 sec   (6172 perm/sec)   p_kst 3.285000e-01   p_cons 2.727000e-01   p_joint 3.449000e-01

Outputting figure to mutsig2_images.part000000000098/LPP.3_1875_10000_0.3285_0.2727_0.3449.png
                gene_name: LPP
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 71 percent done.
LPPR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.488745e-02	ci left: 7.037201e-01	ci right 7.215559e-01	k: 7127	n:10000
KS ci ratio: 1.739549e-02	ci left: 8.280864e-01	ci right 8.427177e-01	k: 8355	n:10000
LPPR5   10000 perm   2 sec   (6072 perm/sec)   p_kst 8.355000e-01   p_cons 7.127000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LPPR5.3_990_10000_0.8355_0.7127_1.png
                gene_name: LPPR5
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
LRCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.773929e-02	ci left: 3.062974e-01	ci right 3.246102e-01	k: 3154	n:10000
Cons ci ratio: 3.841039e-02	ci left: 5.002504e-01	ci right 5.199437e-01	k: 5101	n:10000
KS ci ratio: 7.437322e-02	ci left: 2.092502e-01	ci right 2.255148e-01	k: 2173	n:10000
LRCH1   10000 perm   2 sec   (5510 perm/sec)   p_kst 2.173000e-01   p_cons 5.101000e-01   p_joint 3.154000e-01

Outputting figure to mutsig2_images.part000000000098/LRCH1.3_2487_10000_0.2173_0.5101_0.3154.png
                gene_name: LRCH1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 75 percent done.
LRIT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.981450e-03	ci left: 9.815599e-01	ci right 9.865523e-01	k: 9842	n:10000
Cons ci ratio: 2.632864e-02	ci left: 6.799240e-01	ci right 6.981658e-01	k: 6891	n:10000
KS ci ratio: 4.513363e-02	ci left: 4.201686e-01	ci right 4.396723e-01	k: 4299	n:10000
LRIT2   10000 perm   2 sec   (5714 perm/sec)   p_kst 4.299000e-01   p_cons 6.891000e-01   p_joint 9.842000e-01

Outputting figure to mutsig2_images.part000000000098/LRIT2.3_1665_10000_0.4299_0.6891_0.9842.png
                gene_name: LRIT2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 76 percent done.
LRIT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.805087e-02	ci left: 5.049514e-01	ci right 5.246400e-01	k: 5148	n:10000
Cons ci ratio: 1.990641e-02	ci left: 7.869522e-01	ci right 8.028756e-01	k: 7950	n:10000
KS ci ratio: 5.980736e-02	ci left: 2.914241e-01	ci right 3.094923e-01	k: 3004	n:10000
LRIT3   10000 perm   2 sec   (6142 perm/sec)   p_kst 3.004000e-01   p_cons 7.950000e-01   p_joint 5.148000e-01

Outputting figure to mutsig2_images.part000000000098/LRIT3.3_1917_10000_0.3004_0.795_0.5148.png
                gene_name: LRIT3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 78 percent done.
LOC286238
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.817290e-02	ci left: 5.033509e-01	ci right 5.230414e-01	k: 5132	n:10000
KS ci ratio: 7.148439e-03	ci left: 9.642561e-01	ci right 9.712679e-01	k: 9679	n:10000
LOC286238   10000 perm   1 sec   (7347 perm/sec)   p_kst 9.679000e-01   p_cons 5.132000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LOC286238.2_347_10000_0.9679_0.5132_1.png
                gene_name: LOC286238
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
LOC642587
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.118833e-02	ci left: 7.655723e-01	ci right 7.820679e-01	k: 7739	n:10000
Cons ci ratio: 3.049091e-02	ci left: 6.134166e-01	ci right 6.325117e-01	k: 6230	n:10000
KS ci ratio: 2.687064e-02	ci left: 6.710580e-01	ci right 6.894369e-01	k: 6803	n:10000
LOC642587   10000 perm   1 sec   (7055 perm/sec)   p_kst 6.803000e-01   p_cons 6.230000e-01   p_joint 7.739000e-01

Outputting figure to mutsig2_images.part000000000098/LOC642587.2_321_10000_0.6803_0.623_0.7739.png
                gene_name: LOC642587
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 81 percent done.
LONRF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.083148e-02	ci left: 1.498222e-01	ci right 1.641783e-01	k: 1569	n:10000
Cons ci ratio: 5.910361e-02	ci left: 2.963806e-01	ci right 3.145329e-01	k: 3054	n:10000
KS ci ratio: 6.453735e-02	ci left: 2.607228e-01	ci right 2.782117e-01	k: 2694	n:10000
LONRF3   10000 perm   2 sec   (5908 perm/sec)   p_kst 2.694000e-01   p_cons 3.054000e-01   p_joint 1.569000e-01

Outputting figure to mutsig2_images.part000000000098/LONRF3.2_2324_10000_0.2694_0.3054_0.1569.png
                gene_name: LONRF3
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 83 percent done.
LOXL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.288572e-01	ci left: 2.523219e-02	ci right 3.184628e-02	k: 284	n:10000
Cons ci ratio: 2.903464e-01	ci left: 1.529963e-02	ci right 2.058652e-02	k: 178	n:10000
KS ci ratio: 4.997652e-02	ci left: 3.712686e-01	ci right 3.904009e-01	k: 3808	n:10000
LOXL4   10000 perm   2 sec   (5315 perm/sec)   p_kst 3.808000e-01   p_cons 1.780000e-02   p_joint 2.840000e-02

Joint ci ratio: 1.204400e-01	ci left: 4.726291e-02	ci right 5.336867e-02	k: 1005	n:20000
Cons ci ratio: 2.123661e-01	ci left: 1.496956e-02	ci right 1.857290e-02	k: 334	n:20000
KS ci ratio: 3.542485e-02	ci left: 3.729669e-01	ci right 3.864681e-01	k: 7594	n:20000
LOXL4   20000 perm   4 sec   (4855 perm/sec)   p_kst 3.797000e-01   p_cons 1.670000e-02   p_joint 5.025000e-02

Joint ci ratio: 1.576201e-01	ci left: 1.860592e-02	ci right 2.182127e-02	k: 605	n:30000
Cons ci ratio: 1.697411e-01	ci left: 1.598253e-02	ci right 1.897863e-02	k: 523	n:30000
KS ci ratio: 2.913099e-02	ci left: 3.708800e-01	ci right 3.818773e-01	k: 11291	n:30000
LOXL4   30000 perm   6 sec   (4656 perm/sec)   p_kst 3.763667e-01   p_cons 1.743333e-02   p_joint 2.016667e-02

Joint ci ratio: 1.347274e-01	ci left: 1.932710e-02	ci right 2.214308e-02	k: 828	n:40000
Cons ci ratio: 1.456973e-01	ci left: 1.647862e-02	ci right 1.909206e-02	k: 710	n:40000
KS ci ratio: 2.526312e-02	ci left: 3.709755e-01	ci right 3.804925e-01	k: 15029	n:40000
LOXL4   40000 perm   9 sec   (4505 perm/sec)   p_kst 3.757250e-01   p_cons 1.775000e-02   p_joint 2.070000e-02

Joint ci ratio: 1.240500e-01	ci left: 1.836412e-02	ci right 2.081210e-02	k: 978	n:50000
Cons ci ratio: 1.302973e-01	ci left: 1.662037e-02	ci right 1.895610e-02	k: 888	n:50000
KS ci ratio: 2.269895e-02	ci left: 3.693572e-01	ci right 3.778575e-01	k: 18680	n:50000
LOXL4   50000 perm   11 sec   (4385 perm/sec)   p_kst 3.736000e-01   p_cons 1.776000e-02   p_joint 1.956000e-02

Joint ci ratio: 1.108037e-01	ci left: 1.929999e-02	ci right 2.158006e-02	k: 1225	n:60000
Cons ci ratio: 1.193326e-01	ci left: 1.661144e-02	ci right 1.873558e-02	k: 1059	n:60000
KS ci ratio: 2.071176e-02	ci left: 3.699433e-01	ci right 3.777023e-01	k: 22429	n:60000
LOXL4   60000 perm   14 sec   (4291 perm/sec)   p_kst 3.738167e-01   p_cons 1.765000e-02   p_joint 2.041667e-02

Joint ci ratio: 1.015860e-01	ci left: 1.976946e-02	ci right 2.189909e-02	k: 1457	n:70000
Cons ci ratio: 1.098792e-01	ci left: 1.687507e-02	ci right 1.885090e-02	k: 1249	n:70000
KS ci ratio: 1.916503e-02	ci left: 3.704850e-01	ci right 3.776683e-01	k: 26185	n:70000
LOXL4   70000 perm   17 sec   (4200 perm/sec)   p_kst 3.740714e-01   p_cons 1.784286e-02   p_joint 2.081429e-02

Joint ci ratio: 1.072481e-01	ci left: 1.554339e-02	ci right 1.731693e-02	k: 1313	n:80000
Cons ci ratio: 1.027670e-01	ci left: 1.694376e-02	ci right 1.879145e-02	k: 1428	n:80000
KS ci ratio: 1.788752e-02	ci left: 3.717559e-01	ci right 3.784782e-01	k: 30009	n:80000
LOXL4   80000 perm   19 sec   (4123 perm/sec)   p_kst 3.751125e-01   p_cons 1.785000e-02   p_joint 1.641250e-02

Joint ci ratio: 1.008116e-01	ci left: 1.568864e-02	ci right 1.736496e-02	k: 1486	n:90000
Cons ci ratio: 9.672517e-02	ci left: 1.705463e-02	ci right 1.879886e-02	k: 1612	n:90000
KS ci ratio: 1.685024e-02	ci left: 3.723459e-01	ci right 3.786844e-01	k: 33796	n:90000
LOXL4   90000 perm   22 sec   (4044 perm/sec)   p_kst 3.755111e-01   p_cons 1.791111e-02   p_joint 1.651111e-02

Joint ci ratio: 9.541025e-02	ci left: 1.580738e-02	ci right 1.740083e-02	k: 1659	n:100000
Cons ci ratio: 9.184571e-02	ci left: 1.706768e-02	ci right 1.872045e-02	k: 1788	n:100000
KS ci ratio: 1.598766e-02	ci left: 3.724474e-01	ci right 3.784599e-01	k: 37545	n:100000
LOXL4   100000 perm   25 sec   (3967 perm/sec)   p_kst 3.754500e-01   p_cons 1.788000e-02   p_joint 1.659000e-02

Outputting figure to mutsig2_images.part000000000098/LOXL4.2_2327_100000_0.37545_0.01788_0.01659.png
                gene_name: LOXL4
               theta_stop: 0.095 
                    nperm: 100000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 84 percent done.
LPCAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.040185e-01	ci left: 3.195912e-02	ci right 3.931460e-02	k: 355	n:10000
Cons ci ratio: 3.035655e-01	ci left: 1.390981e-02	ci right 1.897755e-02	k: 163	n:10000
KS ci ratio: 4.772199e-02	ci left: 3.931666e-01	ci right 4.124900e-01	k: 4028	n:10000
LPCAT2   10000 perm   2 sec   (6089 perm/sec)   p_kst 4.028000e-01   p_cons 1.630000e-02   p_joint 3.550000e-02

Joint ci ratio: 1.010309e-01	ci left: 6.645278e-02	ci right 7.357284e-02	k: 1399	n:20000
Cons ci ratio: 2.117242e-01	ci left: 1.506432e-02	ci right 1.867810e-02	k: 336	n:20000
KS ci ratio: 3.382151e-02	ci left: 3.949453e-01	ci right 4.085833e-01	k: 8035	n:20000
LPCAT2   20000 perm   4 sec   (5302 perm/sec)   p_kst 4.017500e-01   p_cons 1.680000e-02   p_joint 6.995000e-02

Joint ci ratio: 7.906322e-02	ci left: 7.273128e-02	ci right 7.875119e-02	k: 2271	n:30000
Cons ci ratio: 1.649973e-01	ci left: 1.694132e-02	ci right 2.001961e-02	k: 553	n:30000
KS ci ratio: 2.767836e-02	ci left: 3.951147e-01	ci right 4.062379e-01	k: 12020	n:30000
LPCAT2   30000 perm   6 sec   (5007 perm/sec)   p_kst 4.006667e-01   p_cons 1.843333e-02   p_joint 7.570000e-02

Joint ci ratio: 7.287801e-02	ci left: 6.498660e-02	ci right 6.992642e-02	k: 2697	n:40000
Cons ci ratio: 1.406458e-01	ci left: 1.770872e-02	ci right 2.041174e-02	k: 761	n:40000
KS ci ratio: 2.395018e-02	ci left: 3.962668e-01	ci right 4.058976e-01	k: 16043	n:40000
LPCAT2   40000 perm   8 sec   (4821 perm/sec)   p_kst 4.010750e-01   p_cons 1.902500e-02   p_joint 6.742500e-02

Joint ci ratio: 7.189469e-02	ci left: 5.409881e-02	ci right 5.815292e-02	k: 2805	n:50000
Cons ci ratio: 1.250305e-01	ci left: 1.807330e-02	ci right 2.050296e-02	k: 963	n:50000
KS ci ratio: 2.137537e-02	ci left: 3.978180e-01	ci right 4.064334e-01	k: 20106	n:50000
LPCAT2   50000 perm   11 sec   (4686 perm/sec)   p_kst 4.021200e-01   p_cons 1.926000e-02   p_joint 5.610000e-02

Joint ci ratio: 6.556056e-02	ci left: 5.438676e-02	ci right 5.808964e-02	k: 3373	n:60000
Cons ci ratio: 1.131338e-01	ci left: 1.850577e-02	ci right 2.074104e-02	k: 1176	n:60000
KS ci ratio: 1.949497e-02	ci left: 3.986391e-01	ci right 4.065037e-01	k: 24154	n:60000
LPCAT2   60000 perm   13 sec   (4568 perm/sec)   p_kst 4.025667e-01   p_cons 1.960000e-02   p_joint 5.621667e-02

Joint ci ratio: 5.815927e-02	ci left: 5.916767e-02	ci right 6.272597e-02	k: 4265	n:70000
Cons ci ratio: 1.048260e-01	ci left: 1.855807e-02	ci right 2.062488e-02	k: 1370	n:70000
KS ci ratio: 1.809222e-02	ci left: 3.977800e-01	ci right 4.050567e-01	k: 28099	n:70000
LPCAT2   70000 perm   16 sec   (4465 perm/sec)   p_kst 4.014143e-01   p_cons 1.957143e-02   p_joint 6.092857e-02

Joint ci ratio: 5.665500e-02	ci left: 5.486060e-02	ci right 5.807166e-02	k: 4516	n:80000
Cons ci ratio: 9.786038e-02	ci left: 1.869942e-02	ci right 2.063563e-02	k: 1572	n:80000
KS ci ratio: 1.695073e-02	ci left: 3.972517e-01	ci right 4.040555e-01	k: 32052	n:80000
LPCAT2   80000 perm   18 sec   (4370 perm/sec)   p_kst 4.006500e-01   p_cons 1.965000e-02   p_joint 5.645000e-02

Outputting figure to mutsig2_images.part000000000098/LPCAT2.2_1691_80000_0.40065_0.01965_0.05645.png
                gene_name: LPCAT2
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.058 

Current progress: 86 percent done.
LPCAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.359145e-02	ci left: 7.253233e-01	ci right 7.427402e-01	k: 7341	n:10000
Cons ci ratio: 5.679055e-02	ci left: 3.134405e-01	ci right 3.318629e-01	k: 3226	n:10000
KS ci ratio: 3.942995e-02	ci left: 4.871524e-01	ci right 5.068493e-01	k: 4970	n:10000
LPCAT3   10000 perm   2 sec   (6255 perm/sec)   p_kst 4.970000e-01   p_cons 3.226000e-01   p_joint 7.341000e-01

Outputting figure to mutsig2_images.part000000000098/LPCAT3.2_1512_10000_0.497_0.3226_0.7341.png
                gene_name: LPCAT3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 87 percent done.
LPCAT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.766457e-02	ci left: 6.581687e-01	ci right 6.767337e-01	k: 6675	n:10000
Cons ci ratio: 4.286032e-02	ci left: 4.456034e-01	ci right 4.652226e-01	k: 4554	n:10000
KS ci ratio: 4.645628e-02	ci left: 4.061158e-01	ci right 4.255332e-01	k: 4158	n:10000
LPCAT4   10000 perm   2 sec   (6422 perm/sec)   p_kst 4.158000e-01   p_cons 4.554000e-01   p_joint 6.675000e-01

Outputting figure to mutsig2_images.part000000000098/LPCAT4.2_1631_10000_0.4158_0.4554_0.6675.png
                gene_name: LPCAT4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 89 percent done.
LPPR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.409025e-02	ci left: 2.105324e-01	ci right 2.268318e-01	k: 2186	n:10000
Cons ci ratio: 5.603282e-02	ci left: 3.192957e-01	ci right 3.378043e-01	k: 3285	n:10000
KS ci ratio: 7.108113e-02	ci left: 2.248418e-01	ci right 2.415139e-01	k: 2331	n:10000
LPPR3   10000 perm   2 sec   (5774 perm/sec)   p_kst 2.331000e-01   p_cons 3.285000e-01   p_joint 2.186000e-01

Outputting figure to mutsig2_images.part000000000098/LPPR3.2_2265_10000_0.2331_0.3285_0.2186.png
                gene_name: LPPR3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 90 percent done.
LPXN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.060242e-02	ci left: 9.267855e-01	ci right 9.367612e-01	k: 9319	n:10000
Cons ci ratio: 7.441696e-02	ci left: 2.090529e-01	ci right 2.253122e-01	k: 2171	n:10000
KS ci ratio: 1.140784e-01	ci left: 9.954457e-02	ci right 1.116863e-01	k: 1055	n:10000
LPXN   10000 perm   2 sec   (6414 perm/sec)   p_kst 1.055000e-01   p_cons 2.171000e-01   p_joint 9.319000e-01

Joint ci ratio: 3.162106e-03	ci left: 9.855443e-01	ci right 9.887118e-01	k: 19744	n:20000
Cons ci ratio: 5.242097e-02	ci left: 2.127398e-01	ci right 2.242422e-01	k: 4369	n:20000
KS ci ratio: 8.028516e-02	ci left: 1.022081e-01	ci right 1.108067e-01	k: 2129	n:20000
LPXN   20000 perm   4 sec   (5510 perm/sec)   p_kst 1.064500e-01   p_cons 2.184500e-01   p_joint 9.872000e-01

Outputting figure to mutsig2_images.part000000000098/LPXN.2_1229_20000_0.10645_0.21845_0.9872.png
                gene_name: LPXN
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 92 percent done.
LRAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.215005e-02	ci left: 5.881121e-01	ci right 6.074309e-01	k: 5978	n:10000
KS ci ratio: 9.124547e-02	ci left: 1.486448e-01	ci right 1.629564e-01	k: 1557	n:10000
LRAT   10000 perm   1 sec   (6930 perm/sec)   p_kst 1.557000e-01   p_cons 5.978000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LRAT.2_701_10000_0.1557_0.5978_1.png
                gene_name: LRAT
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
LRCH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.338807e-02	ci left: 5.697529e-01	ci right 5.892008e-01	k: 5795	n:10000
Cons ci ratio: 1.779247e-02	ci left: 8.216784e-01	ci right 8.365294e-01	k: 8292	n:10000
KS ci ratio: 8.184094e-02	ci left: 1.789079e-01	ci right 1.942751e-01	k: 1865	n:10000
LRCH2   10000 perm   2 sec   (5760 perm/sec)   p_kst 1.865000e-01   p_cons 8.292000e-01   p_joint 5.795000e-01

Outputting figure to mutsig2_images.part000000000098/LRCH2.2_2382_10000_0.1865_0.8292_0.5795.png
                gene_name: LRCH2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 95 percent done.
LRCH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.466975e-02	ci left: 8.706072e-01	ci right 8.835722e-01	k: 8772	n:10000
KS ci ratio: 4.244799e-02	ci left: 4.503941e-01	ci right 4.700291e-01	k: 4602	n:10000
LRCH4   10000 perm   2 sec   (5754 perm/sec)   p_kst 4.602000e-01   p_cons 8.772000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LRCH4.2_2124_10000_0.4602_0.8772_1.png
                gene_name: LRCH4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
LRIG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.463854e-02	ci left: 7.078571e-01	ci right 7.256165e-01	k: 7168	n:10000
Cons ci ratio: 1.258621e-02	ci left: 9.007276e-01	ci right 9.122343e-01	k: 9066	n:10000
KS ci ratio: 8.080449e-02	ci left: 1.827459e-01	ci right 1.982349e-01	k: 1904	n:10000
LRIG2   10000 perm   2 sec   (5440 perm/sec)   p_kst 1.904000e-01   p_cons 9.066000e-01   p_joint 7.168000e-01

Outputting figure to mutsig2_images.part000000000098/LRIG2.2_3270_10000_0.1904_0.9066_0.7168.png
                gene_name: LRIG2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 98 percent done.
LRRC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.619910e-02	ci left: 4.088062e-01	ci right 4.282413e-01	k: 4185	n:10000
KS ci ratio: 5.184997e-02	ci left: 3.541627e-01	ci right 3.731168e-01	k: 3636	n:10000
LRRC10   10000 perm   1 sec   (6680 perm/sec)   p_kst 3.636000e-01   p_cons 4.185000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000098/LRRC10.2_838_10000_0.3636_0.4185_1.png
                gene_name: LRRC10
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000098
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 98 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1649>
Subject: Job 9894002: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1649>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000099> was used as the working directory.
Started at Sat Oct  6 00:17:11 2012
Results reported at Sat Oct  6 00:26:58 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000099.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000099.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 99  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000099.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    608.89 sec.
    Max Memory :      3507 MB
    Max Swap   :      5968 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
99
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 99
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 99: processing genes 8836 - 8925
Calculating significance of each gene.
Using projection method.
8836	LRRC14	1
8837	LRRC14B	6.952425e-01
8838	LRRC15	8.678361e-01
8839	LRRC16A	3.886509e-01
8840	LRRC16B	5.861940e-01
8841	LRRC17	1.622241e-01
8842	LRRC18	2.935405e-02
8843	LRRC19	1
8844	LRRC2	7.995610e-01
8845	LRRC20	1.010885e-01
8846	LRRC23	8.150996e-01
8847	LRRC24	1
8848	LRRC25	6.882727e-01
8849	LRRC27	6.453916e-01
8850	LRRC28	5.098044e-01
8851	LRRC29	1
8852	LRRC3	1
8853	LRRC30	2.883832e-02
8854	LRRC31	2.787404e-01
8855	LRRC32	8.424129e-01
8856	LRRC33	7.172822e-01
8857	LRRC34	7.899412e-01
8858	LRRC36	6.045308e-01
8859	LRRC37A3	7.348255e-01
8860	LRRC37B	9.485755e-01
8861	LRRC39	3.519009e-01
8862	LRRC3B	4.176760e-01
8863	LRRC4	2.435837e-01
8864	LRRC40	3.929040e-01
8865	LRRC41	2.800490e-01
8866	LRRC42	1
8867	LRRC43	7.207223e-01
8868	LRRC45	1
8869	LRRC46	7.778869e-01
8870	LRRC47	9.156741e-01
8871	LRRC48	8.904722e-01
8872	LRRC49	1.718216e-01
8873	LRRC4B	9.209117e-01
8874	LRRC4C	2.000582e-02
8875	LRRC50	5.427397e-01
8876	LRRC52	3.029018e-02
8877	LRRC55	8.275884e-01
8878	LRRC56	1
8879	LRRC57	5.315050e-01
8880	LRRC58	3.230046e-01
8881	LRRC59	1.999537e-01
8882	LRRC6	8.137216e-01
8883	LRRC61	8.049562e-01
8884	LRRC66	2.985127e-01
8885	LRRC67	5.654268e-01
8886	LRRC7	1.264063e-02
8887	LRRC8A	1.349275e-01
8888	LRRC8B	9.039904e-01
8889	LRRC8C	7.653181e-01
8890	LRRC8D	2.023143e-01
8891	LRRC8E	8.885780e-01
8892	LRRCC1	6.033915e-01
8893	LRRFIP1	7.969046e-01
In gene LRRFIP2 the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 2274    n = 1	mu =   7.59e-07
8894	LRRFIP2	7.398269e-02
8895	LRRIQ1	4.467883e-03
8896	LRRIQ3	1.008684e-04
8897	LRRIQ4	4.944004e-01
8898	LRRK1	8.879636e-01
8899	LRRK2	2.269780e-03
8900	LRRN1	1.243929e-01
8901	LRRN2	9.826875e-01
8902	LRRN3	7.318976e-05
8903	LRRN4	9.885053e-01
8904	LRRN4CL	1
8905	LRRTM1	1.233447e-01
8906	LRRTM2	1.865732e-02
8907	LRRTM3	1.574215e-01
8908	LRRTM4	1.173567e-01
8909	LRSAM1	9.748691e-01
8910	LRTM1	2.309927e-03
8911	LRTM2	6.288796e-01
8912	LRTOMT	2.718397e-01
8913	LRWD1	7.444268e-01
8914	LSAMP	5.182295e-01
8915	LSG1	8.154276e-01
8916	LSM1	2.895352e-02
8917	LSM10	1
8918	LSM11	3.804149e-01
8919	LSM12	5.281115e-01
8920	LSM14A	2.891904e-02
8921	LSM14B	8.698420e-01
8922	LSM2	1.245603e-01
8923	LSM3	9.113682e-02
8924	LSM4	6.223545e-01
8925	LSM5	1.826153e-01
Done

Running MutSig 2:
Scatter job 99: processing genes 8836 - 8925
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
LRRK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.047675e-02	ci left: 9.283358e-01	ci right 9.382100e-01	k: 9334	n:10000
KS ci ratio: 1.251928e-02	ci left: 9.016521e-01	ci right 9.131093e-01	k: 9075	n:10000
LRRK2   10000 perm   3 sec   (3344 perm/sec)   p_kst 9.075000e-01   p_cons 9.334000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRK2.24_7788_10000_0.9075_0.9334_1.png
                gene_name: LRRK2
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
LRRIQ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.185194e-01	ci left: 9.272705e-02	ci right 1.045080e-01	k: 985	n:10000
Cons ci ratio: 8.751475e-02	ci left: 1.597376e-01	ci right 1.744569e-01	k: 1670	n:10000
KS ci ratio: 1.393752e-01	ci left: 6.816984e-02	ci right 7.848038e-02	k: 732	n:10000
LRRIQ1   10000 perm   3 sec   (3793 perm/sec)   p_kst 7.320000e-02   p_cons 1.670000e-01   p_joint 9.850000e-02

Joint ci ratio: 1.095169e-01	ci left: 5.689394e-02	ci right 6.353464e-02	k: 1203	n:20000
Cons ci ratio: 6.427714e-02	ci left: 1.517365e-01	ci right 1.618635e-01	k: 3135	n:20000
KS ci ratio: 9.866417e-02	ci left: 6.952973e-02	ci right 7.679495e-02	k: 1462	n:20000
LRRIQ1   20000 perm   6 sec   (3499 perm/sec)   p_kst 7.310000e-02   p_cons 1.567500e-01   p_joint 6.015000e-02

Joint ci ratio: 8.866577e-02	ci left: 5.844827e-02	ci right 6.390376e-02	k: 1834	n:30000
Cons ci ratio: 5.261505e-02	ci left: 1.520097e-01	ci right 1.602570e-01	k: 4683	n:30000
KS ci ratio: 8.098837e-02	ci left: 6.949235e-02	ci right 7.539078e-02	k: 2172	n:30000
LRRIQ1   30000 perm   9 sec   (3365 perm/sec)   p_kst 7.240000e-02   p_cons 1.561000e-01   p_joint 6.113333e-02

Outputting figure to mutsig2_images.part000000000099/LRRIQ1.22_5277_30000_0.0724_0.1561_0.061133.png
                gene_name: LRRIQ1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.064 

Current progress: 3 percent done.
LRRC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.460418e-01	ci left: 6.227288e-02	ci right 7.218104e-02	k: 671	n:10000
Cons ci ratio: 2.040594e-02	ci left: 7.786397e-01	ci right 7.947930e-01	k: 7868	n:10000
KS ci ratio: 2.928552e-01	ci left: 1.502126e-02	ci right 2.026513e-02	k: 175	n:10000
LRRC7   10000 perm   2 sec   (4291 perm/sec)   p_kst 1.750000e-02   p_cons 7.868000e-01   p_joint 6.710000e-02

Joint ci ratio: 1.181094e-01	ci left: 4.910901e-02	ci right 5.532199e-02	k: 1043	n:20000
Cons ci ratio: 1.434944e-02	ci left: 7.829251e-01	ci right 7.942909e-01	k: 15773	n:20000
KS ci ratio: 1.965473e-01	ci left: 1.758116e-02	ci right 2.146030e-02	k: 389	n:20000
LRRC7   20000 perm   5 sec   (3858 perm/sec)   p_kst 1.945000e-02   p_cons 7.886500e-01   p_joint 5.215000e-02

Joint ci ratio: 1.125941e-01	ci left: 3.664280e-02	ci right 4.104708e-02	k: 1164	n:30000
Cons ci ratio: 1.181280e-02	ci left: 7.812140e-01	ci right 7.905305e-01	k: 23577	n:30000
KS ci ratio: 1.549027e-01	ci left: 1.927906e-02	ci right 2.254798e-02	k: 626	n:30000
LRRC7   30000 perm   8 sec   (3749 perm/sec)   p_kst 2.086667e-02   p_cons 7.859000e-01   p_joint 3.880000e-02

Joint ci ratio: 9.732521e-02	ci left: 3.707501e-02	ci right 4.089229e-02	k: 1558	n:40000
Cons ci ratio: 1.023701e-02	ci left: 7.816204e-01	ci right 7.896880e-01	k: 31427	n:40000
KS ci ratio: 1.351442e-01	ci left: 1.920624e-02	ci right 2.201396e-02	k: 823	n:40000
LRRC7   40000 perm   11 sec   (3685 perm/sec)   p_kst 2.057500e-02   p_cons 7.856750e-01   p_joint 3.895000e-02

Joint ci ratio: 8.337337e-02	ci left: 4.057202e-02	ci right 4.412137e-02	k: 2116	n:50000
Cons ci ratio: 9.149591e-03	ci left: 7.822981e-01	ci right 7.895087e-01	k: 39296	n:50000
KS ci ratio: 1.219081e-01	ci left: 1.902359e-02	ci right 2.151254e-02	k: 1012	n:50000
LRRC7   50000 perm   14 sec   (3625 perm/sec)   p_kst 2.024000e-02   p_cons 7.859200e-01   p_joint 4.232000e-02

Joint ci ratio: 7.112715e-02	ci left: 4.646695e-02	ci right 4.991025e-02	k: 2890	n:60000
Cons ci ratio: 8.693708e-03	ci left: 7.687556e-01	ci right 7.754847e-01	k: 46328	n:60000
KS ci ratio: 1.109887e-01	ci left: 1.923514e-02	ci right 2.151158e-02	k: 1221	n:60000
LRRC7   60000 perm   17 sec   (3548 perm/sec)   p_kst 2.035000e-02   p_cons 7.721333e-01   p_joint 4.816667e-02

Joint ci ratio: 7.063543e-02	ci left: 4.065230e-02	ci right 4.364294e-02	k: 2949	n:70000
Cons ci ratio: 8.058392e-03	ci left: 7.685866e-01	ci right 7.748194e-01	k: 54020	n:70000
KS ci ratio: 1.024505e-01	ci left: 1.943518e-02	ci right 2.154768e-02	k: 1433	n:70000
LRRC7   70000 perm   20 sec   (3482 perm/sec)   p_kst 2.047143e-02   p_cons 7.717143e-01   p_joint 4.212857e-02

Joint ci ratio: 6.194209e-02	ci left: 4.619633e-02	ci right 4.916158e-02	k: 3813	n:80000
Cons ci ratio: 7.248044e-03	ci left: 7.823753e-01	ci right 7.880790e-01	k: 62819	n:80000
KS ci ratio: 9.670654e-02	ci left: 1.915088e-02	ci right 2.110914e-02	k: 1609	n:80000
LRRC7   80000 perm   23 sec   (3423 perm/sec)   p_kst 2.011250e-02   p_cons 7.852375e-01   p_joint 4.766250e-02

Outputting figure to mutsig2_images.part000000000099/LRRC7.20_4714_80000_0.020112_0.78524_0.047662.png
                gene_name: LRRC7
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.049 

Current progress: 5 percent done.
LRRIQ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.980231e-02	ci left: 4.824548e-01	ci right 5.021497e-01	k: 4923	n:10000
Cons ci ratio: 7.319143e-02	ci left: 2.146757e-01	ci right 2.310860e-01	k: 2228	n:10000
KS ci ratio: 3.385608e-02	ci left: 5.629343e-01	ci right 5.824233e-01	k: 5727	n:10000
LRRIQ3   10000 perm   2 sec   (5098 perm/sec)   p_kst 5.727000e-01   p_cons 2.228000e-01   p_joint 4.923000e-01

Outputting figure to mutsig2_images.part000000000099/LRRIQ3.12_1903_10000_0.5727_0.2228_0.4923.png
                gene_name: LRRIQ3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 7 percent done.
LRRN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.555655e-01	ci left: 5.503869e-02	ci right 6.441983e-02	k: 596	n:10000
Cons ci ratio: 2.797670e-02	ci left: 6.531359e-01	ci right 6.717694e-01	k: 6625	n:10000
KS ci ratio: 2.005397e-01	ci left: 3.310027e-02	ci right 4.057267e-02	k: 367	n:10000
LRRN3   10000 perm   2 sec   (5073 perm/sec)   p_kst 3.670000e-02   p_cons 6.625000e-01   p_joint 5.960000e-02

Joint ci ratio: 1.051694e-01	ci left: 6.152427e-02	ci right 6.840287e-02	k: 1298	n:20000
Cons ci ratio: 1.979434e-02	ci left: 6.556472e-01	ci right 6.688056e-01	k: 13245	n:20000
KS ci ratio: 1.422079e-01	ci left: 3.399185e-02	ci right 3.924397e-02	k: 731	n:20000
LRRN3   20000 perm   4 sec   (4606 perm/sec)   p_kst 3.655000e-02   p_cons 6.622500e-01   p_joint 6.490000e-02

Joint ci ratio: 7.906322e-02	ci left: 7.273128e-02	ci right 7.875119e-02	k: 2271	n:30000
Cons ci ratio: 1.617125e-02	ci left: 6.566151e-01	ci right 6.673535e-01	k: 19860	n:30000
KS ci ratio: 1.173388e-01	ci left: 3.375839e-02	ci right 3.799877e-02	k: 1075	n:30000
LRRN3   30000 perm   7 sec   (4427 perm/sec)   p_kst 3.583333e-02   p_cons 6.620000e-01   p_joint 7.570000e-02

Joint ci ratio: 8.124298e-02	ci left: 5.276118e-02	ci right 5.725370e-02	k: 2199	n:40000
Cons ci ratio: 1.396727e-02	ci left: 6.585442e-01	ci right 6.678321e-01	k: 26528	n:40000
KS ci ratio: 1.002733e-01	ci left: 3.495178e-02	ci right 3.866586e-02	k: 1471	n:40000
LRRN3   40000 perm   9 sec   (4304 perm/sec)   p_kst 3.677500e-02   p_cons 6.632000e-01   p_joint 5.497500e-02

Joint ci ratio: 6.757347e-02	ci left: 6.092516e-02	ci right 6.520574e-02	k: 3152	n:50000
Cons ci ratio: 1.247151e-02	ci left: 6.598003e-01	ci right 6.681007e-01	k: 33198	n:50000
KS ci ratio: 8.966210e-02	ci left: 3.516670e-02	ci right 3.848735e-02	k: 1840	n:50000
LRRN3   50000 perm   12 sec   (4207 perm/sec)   p_kst 3.680000e-02   p_cons 6.639600e-01   p_joint 6.304000e-02

Outputting figure to mutsig2_images.part000000000099/LRRN3.11_2131_50000_0.0368_0.66396_0.06304.png
                gene_name: LRRN3
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.065 

Current progress: 9 percent done.
LRRK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.917731e-02	ci left: 7.990245e-01	ci right 8.145964e-01	k: 8069	n:10000
Cons ci ratio: 2.061858e-02	ci left: 7.750931e-01	ci right 7.913416e-01	k: 7833	n:10000
KS ci ratio: 3.544597e-02	ci left: 5.402861e-01	ci right 5.598847e-01	k: 5501	n:10000
LRRK1   10000 perm   2 sec   (4269 perm/sec)   p_kst 5.501000e-01   p_cons 7.833000e-01   p_joint 8.069000e-01

Outputting figure to mutsig2_images.part000000000099/LRRK1.10_6180_10000_0.5501_0.7833_0.8069.png
                gene_name: LRRK1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 10 percent done.
LRRC16A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.584033e-02	ci left: 4.125930e-01	ci right 4.320522e-01	k: 4223	n:10000
Cons ci ratio: 4.320754e-02	ci left: 4.416119e-01	ci right 4.612164e-01	k: 4514	n:10000
KS ci ratio: 5.029588e-02	ci left: 3.682841e-01	ci right 3.873871e-01	k: 3778	n:10000
LRRC16A   10000 perm   2 sec   (4636 perm/sec)   p_kst 3.778000e-01   p_cons 4.514000e-01   p_joint 4.223000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC16A.9_4264_10000_0.3778_0.4514_0.4223.png
                gene_name: LRRC16A
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 12 percent done.
LRRC31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.950997e-02	ci left: 2.935057e-01	ci right 3.116095e-01	k: 3025	n:10000
Cons ci ratio: 9.155892e-02	ci left: 1.477618e-01	ci right 1.620398e-01	k: 1548	n:10000
KS ci ratio: 2.210077e-02	ci left: 7.502904e-01	ci right 7.671586e-01	k: 7588	n:10000
LRRC31   10000 perm   2 sec   (5877 perm/sec)   p_kst 7.588000e-01   p_cons 1.548000e-01   p_joint 3.025000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC31.8_1695_10000_0.7588_0.1548_0.3025.png
                gene_name: LRRC31
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 14 percent done.
LRRC4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.178519e-03	ci left: 9.435701e-01	ci right 9.523667e-01	k: 9481	n:10000
Cons ci ratio: 7.056164e-03	ci left: 9.650977e-01	ci right 9.720258e-01	k: 9687	n:10000
KS ci ratio: 1.925724e-02	ci left: 7.977051e-01	ci right 8.133165e-01	k: 8056	n:10000
LRRC4C   10000 perm   2 sec   (5108 perm/sec)   p_kst 8.056000e-01   p_cons 9.687000e-01   p_joint 9.481000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC4C.8_1927_10000_0.8056_0.9687_0.9481.png
                gene_name: LRRC4C
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 16 percent done.
LRRC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.079888e-01	ci left: 3.072413e-02	ci right 3.795045e-02	k: 342	n:10000
Cons ci ratio: 7.516901e-02	ci left: 2.057000e-01	ci right 2.218670e-01	k: 2137	n:10000
KS ci ratio: 2.757973e-01	ci left: 1.706687e-02	ci right 2.261782e-02	k: 197	n:10000
LRRC4   10000 perm   2 sec   (5234 perm/sec)   p_kst 1.970000e-02   p_cons 2.137000e-01   p_joint 3.420000e-02

Joint ci ratio: 1.978447e-01	ci left: 1.734330e-02	ci right 2.119826e-02	k: 384	n:20000
Cons ci ratio: 5.337546e-02	ci left: 2.066992e-01	ci right 2.180846e-01	k: 4247	n:20000
KS ci ratio: 1.975832e-01	ci left: 1.739087e-02	ci right 2.125067e-02	k: 385	n:20000
LRRC4   20000 perm   4 sec   (4779 perm/sec)   p_kst 1.925000e-02   p_cons 2.123500e-01   p_joint 1.920000e-02

Joint ci ratio: 1.316602e-01	ci left: 2.680750e-02	ci right 3.061784e-02	k: 860	n:30000
Cons ci ratio: 4.359843e-02	ci left: 2.076178e-01	ci right 2.169047e-01	k: 6367	n:30000
KS ci ratio: 1.547767e-01	ci left: 1.931113e-02	ci right 2.258257e-02	k: 627	n:30000
LRRC4   30000 perm   7 sec   (4595 perm/sec)   p_kst 2.090000e-02   p_cons 2.122333e-01   p_joint 2.866667e-02

Joint ci ratio: 1.116410e-01	ci left: 2.822835e-02	ci right 3.159035e-02	k: 1195	n:40000
Cons ci ratio: 3.580143e-02	ci left: 2.264545e-01	ci right 2.347347e-01	k: 9223	n:40000
KS ci ratio: 1.320677e-01	ci left: 2.012510e-02	ci right 2.299494e-02	k: 861	n:40000
LRRC4   40000 perm   9 sec   (4454 perm/sec)   p_kst 2.152500e-02   p_cons 2.305750e-01   p_joint 2.987500e-02

Joint ci ratio: 1.072975e-01	ci left: 2.460324e-02	ci right 2.741216e-02	k: 1299	n:50000
Cons ci ratio: 3.209416e-02	ci left: 2.260983e-01	ci right 2.334931e-01	k: 11489	n:50000
KS ci ratio: 1.179854e-01	ci left: 2.032418e-02	ci right 2.289178e-02	k: 1079	n:50000
LRRC4   50000 perm   12 sec   (4307 perm/sec)   p_kst 2.158000e-02   p_cons 2.297800e-01   p_joint 2.598000e-02

Joint ci ratio: 9.115483e-02	ci left: 2.853539e-02	ci right 3.127699e-02	k: 1793	n:60000
Cons ci ratio: 2.936560e-02	ci left: 2.256095e-01	ci right 2.323500e-01	k: 13738	n:60000
KS ci ratio: 1.064941e-01	ci left: 2.090607e-02	ci right 2.327381e-02	k: 1324	n:60000
LRRC4   60000 perm   14 sec   (4225 perm/sec)   p_kst 2.206667e-02   p_cons 2.289667e-01   p_joint 2.988333e-02

Joint ci ratio: 8.141353e-02	ci left: 3.075049e-02	ci right 3.337420e-02	k: 2243	n:70000
Cons ci ratio: 2.728536e-02	ci left: 2.245977e-01	ci right 2.308249e-01	k: 15939	n:70000
KS ci ratio: 9.858907e-02	ci left: 2.099578e-02	ci right 2.318694e-02	k: 1545	n:70000
LRRC4   70000 perm   17 sec   (4147 perm/sec)   p_kst 2.207143e-02   p_cons 2.277000e-01   p_joint 3.204286e-02

Outputting figure to mutsig2_images.part000000000099/LRRC4.7_1966_70000_0.022071_0.2277_0.032043.png
                gene_name: LRRC4
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 17 percent done.
LRRC8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.829882e-02	ci left: 8.134449e-01	ci right 8.285676e-01	k: 8211	n:10000
KS ci ratio: 9.326530e-03	ci left: 9.419078e-01	ci right 9.508299e-01	k: 9465	n:10000
LRRC8A   10000 perm   2 sec   (5146 perm/sec)   p_kst 9.465000e-01   p_cons 8.211000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRC8A.7_2441_10000_0.9465_0.8211_1.png
                gene_name: LRRC8A
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
LRRCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.437565e-02	ci left: 8.750041e-01	ci right 8.877728e-01	k: 8815	n:10000
Cons ci ratio: 1.695073e-02	ci left: 8.352108e-01	ci right 8.495891e-01	k: 8425	n:10000
KS ci ratio: 2.101880e-02	ci left: 7.684076e-01	ci right 7.848309e-01	k: 7767	n:10000
LRRCC1   10000 perm   2 sec   (5162 perm/sec)   p_kst 7.767000e-01   p_cons 8.425000e-01   p_joint 8.815000e-01

Outputting figure to mutsig2_images.part000000000099/LRRCC1.7_3175_10000_0.7767_0.8425_0.8815.png
                gene_name: LRRCC1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 21 percent done.
LRRFIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.902339e-02	ci left: 8.015621e-01	ci right 8.170573e-01	k: 8094	n:10000
Cons ci ratio: 4.495916e-02	ci left: 4.220628e-01	ci right 4.415769e-01	k: 4318	n:10000
KS ci ratio: 2.308428e-02	ci left: 7.338101e-01	ci right 7.510485e-01	k: 7425	n:10000
LRRFIP2   10000 perm   2 sec   (5173 perm/sec)   p_kst 7.425000e-01   p_cons 4.318000e-01   p_joint 8.094000e-01

Outputting figure to mutsig2_images.part000000000099/LRRFIP2.7_2274_10000_0.7425_0.4318_0.8094.png
                gene_name: LRRFIP2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 22 percent done.
LRTM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.444354e-01	ci left: 6.362530e-02	ci right 7.362777e-02	k: 685	n:10000
Cons ci ratio: 4.225205e-02	ci left: 4.526899e-01	ci right 4.723320e-01	k: 4625	n:10000
KS ci ratio: 2.554752e-01	ci left: 2.005779e-02	ci right 2.602453e-02	k: 229	n:10000
LRTM1   10000 perm   2 sec   (5823 perm/sec)   p_kst 2.290000e-02   p_cons 4.625000e-01   p_joint 6.850000e-02

Joint ci ratio: 1.276899e-01	ci left: 4.211982e-02	ci right 4.791339e-02	k: 899	n:20000
Cons ci ratio: 2.999662e-02	ci left: 4.536232e-01	ci right 4.674882e-01	k: 9211	n:20000
KS ci ratio: 1.790652e-01	ci left: 2.130163e-02	ci right 2.553849e-02	k: 467	n:20000
LRTM1   20000 perm   4 sec   (5179 perm/sec)   p_kst 2.335000e-02   p_cons 4.605500e-01   p_joint 4.495000e-02

Joint ci ratio: 9.525516e-02	ci left: 5.088254e-02	ci right 5.600438e-02	k: 1602	n:30000
Cons ci ratio: 2.403849e-02	ci left: 4.642055e-01	ci right 4.755337e-01	k: 14096	n:30000
KS ci ratio: 1.478326e-01	ci left: 2.120485e-02	ci right 2.462174e-02	k: 686	n:30000
LRTM1   30000 perm   6 sec   (4973 perm/sec)   p_kst 2.286667e-02   p_cons 4.698667e-01   p_joint 5.340000e-02

Joint ci ratio: 8.139971e-02	ci left: 5.256503e-02	ci right 5.704988e-02	k: 2191	n:40000
Cons ci ratio: 2.080848e-02	ci left: 4.651987e-01	ci right 4.750057e-01	k: 18804	n:40000
KS ci ratio: 1.260008e-01	ci left: 2.213455e-02	ci right 2.513515e-02	k: 944	n:40000
LRTM1   40000 perm   8 sec   (4824 perm/sec)   p_kst 2.360000e-02   p_cons 4.701000e-01   p_joint 5.477500e-02

Joint ci ratio: 8.405983e-02	ci left: 3.992527e-02	ci right 4.344820e-02	k: 2083	n:50000
Cons ci ratio: 1.958284e-02	ci left: 4.404974e-01	ci right 4.492290e-01	k: 22243	n:50000
KS ci ratio: 1.156010e-01	ci left: 2.117900e-02	ci right 2.379685e-02	k: 1123	n:50000
LRTM1   50000 perm   11 sec   (4714 perm/sec)   p_kst 2.246000e-02   p_cons 4.448600e-01   p_joint 4.166000e-02

Joint ci ratio: 6.537598e-02	ci left: 5.468213e-02	ci right 5.839424e-02	k: 3391	n:60000
Cons ci ratio: 1.700677e-02	ci left: 4.656165e-01	ci right 4.736198e-01	k: 28177	n:60000
KS ci ratio: 1.062484e-01	ci left: 2.100346e-02	ci right 2.337640e-02	k: 1330	n:60000
LRTM1   60000 perm   13 sec   (4630 perm/sec)   p_kst 2.216667e-02   p_cons 4.696167e-01   p_joint 5.651667e-02

Joint ci ratio: 6.364940e-02	ci left: 4.976164e-02	ci right 5.304710e-02	k: 3597	n:70000
Cons ci ratio: 1.576026e-02	ci left: 4.654401e-01	ci right 4.728481e-01	k: 32840	n:70000
KS ci ratio: 9.813565e-02	ci left: 2.119097e-02	ci right 2.339174e-02	k: 1559	n:70000
LRTM1   70000 perm   16 sec   (4466 perm/sec)   p_kst 2.227143e-02   p_cons 4.691429e-01   p_joint 5.138571e-02

Outputting figure to mutsig2_images.part000000000099/LRTM1.7_1050_70000_0.022271_0.46914_0.051386.png
                gene_name: LRTM1
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.053 

Current progress: 24 percent done.
LRRC16B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.353171e-02	ci left: 4.379204e-01	ci right 4.575101e-01	k: 4477	n:10000
Cons ci ratio: 3.755134e-02	ci left: 5.115541e-01	ci right 5.312334e-01	k: 5214	n:10000
KS ci ratio: 6.673845e-02	ci left: 2.478638e-01	ci right 2.650783e-01	k: 2564	n:10000
LRRC16B   10000 perm   2 sec   (4800 perm/sec)   p_kst 2.564000e-01   p_cons 5.214000e-01   p_joint 4.477000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC16B.6_4279_10000_0.2564_0.5214_0.4477.png
                gene_name: LRRC16B
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 26 percent done.
LRRC41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.197341e-02	ci left: 3.530692e-01	ci right 3.720109e-01	k: 3625	n:10000
Cons ci ratio: 7.014019e-02	ci left: 2.295818e-01	ci right 2.463711e-01	k: 2379	n:10000
KS ci ratio: 5.088933e-02	ci left: 3.628135e-01	ci right 3.818609e-01	k: 3723	n:10000
LRRC41   10000 perm   2 sec   (5772 perm/sec)   p_kst 3.723000e-01   p_cons 2.379000e-01   p_joint 3.625000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC41.6_2479_10000_0.3723_0.2379_0.3625.png
                gene_name: LRRC41
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 28 percent done.
LRRC49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.333732e-02	ci left: 8.901588e-01	ci right 9.022093e-01	k: 8963	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
LRRC49   10000 perm   2 sec   (5516 perm/sec)   p_kst 1   p_cons 8.963000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRC49.6_2125_10000_1_0.8963_1.png
                gene_name: LRRC49
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
LRRC66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.493343e-02	ci left: 5.474992e-01	ci right 5.670674e-01	k: 5573	n:10000
Cons ci ratio: 3.688720e-02	ci left: 5.204606e-01	ci right 5.401218e-01	k: 5303	n:10000
KS ci ratio: 4.639896e-02	ci left: 4.067137e-01	ci right 4.261351e-01	k: 4164	n:10000
LRRC66   10000 perm   2 sec   (5039 perm/sec)   p_kst 4.164000e-01   p_cons 5.303000e-01   p_joint 5.573000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC66.6_2659_10000_0.4164_0.5303_0.5573.png
                gene_name: LRRC66
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 31 percent done.
LRRN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.256337e-02	ci left: 2.176360e-01	ci right 2.341240e-01	k: 2258	n:10000
Cons ci ratio: 5.489697e-02	ci left: 3.283299e-01	ci right 3.469648e-01	k: 3376	n:10000
KS ci ratio: 9.342158e-02	ci left: 1.426620e-01	ci right 1.567427e-01	k: 1496	n:10000
LRRN1   10000 perm   2 sec   (5410 perm/sec)   p_kst 1.496000e-01   p_cons 3.376000e-01   p_joint 2.258000e-01

Outputting figure to mutsig2_images.part000000000099/LRRN1.6_2155_10000_0.1496_0.3376_0.2258.png
                gene_name: LRRN1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 33 percent done.
LRRTM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.279515e-01	ci left: 8.028489e-02	ci right 9.135778e-02	k: 857	n:10000
Cons ci ratio: 1.435388e-01	ci left: 6.439839e-02	ci right 7.445420e-02	k: 693	n:10000
KS ci ratio: 7.859457e-02	ci left: 1.913119e-01	ci right 2.070637e-01	k: 1991	n:10000
LRRTM1   10000 perm   2 sec   (6062 perm/sec)   p_kst 1.991000e-01   p_cons 6.930000e-02   p_joint 8.570000e-02

Joint ci ratio: 6.875588e-02	ci left: 1.349723e-01	ci right 1.446327e-01	k: 2795	n:20000
Cons ci ratio: 9.751825e-02	ci left: 7.109338e-02	ci right 7.843082e-02	k: 1494	n:20000
KS ci ratio: 5.486273e-02	ci left: 1.977408e-01	ci right 2.089456e-01	k: 4066	n:20000
LRRTM1   20000 perm   4 sec   (5405 perm/sec)   p_kst 2.033000e-01   p_cons 7.470000e-02   p_joint 1.397500e-01

Outputting figure to mutsig2_images.part000000000099/LRRTM1.6_1573_20000_0.2033_0.0747_0.13975.png
                gene_name: LRRTM1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 34 percent done.
LRRTM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.316256e-02	ci left: 5.730625e-01	ci right 5.924892e-01	k: 5828	n:10000
KS ci ratio: 1.990030e-02	ci left: 7.870536e-01	ci right 8.029742e-01	k: 7951	n:10000
LRRTM2   10000 perm   2 sec   (5535 perm/sec)   p_kst 7.951000e-01   p_cons 5.828000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRTM2.6_1559_10000_0.7951_0.5828_1.png
                gene_name: LRRTM2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
LRRTM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.757859e-02	ci left: 8.251362e-01	ci right 8.398695e-01	k: 8326	n:10000
Cons ci ratio: 1.092424e-02	ci left: 9.227580e-01	ci right 9.329911e-01	k: 9280	n:10000
KS ci ratio: 2.443237e-02	ci left: 7.112884e-01	ci right 7.289832e-01	k: 7202	n:10000
LRRTM4   10000 perm   2 sec   (5616 perm/sec)   p_kst 7.202000e-01   p_cons 9.280000e-01   p_joint 8.326000e-01

Outputting figure to mutsig2_images.part000000000099/LRRTM4.6_1791_10000_0.7202_0.928_0.8326.png
                gene_name: LRRTM4
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 38 percent done.
LSM14A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.107303e-02	ci left: 4.667689e-01	ci right 4.864447e-01	k: 4766	n:10000
Cons ci ratio: 1.635299e-02	ci left: 8.446839e-01	ci right 8.587105e-01	k: 8518	n:10000
KS ci ratio: 6.180047e-02	ci left: 2.779488e-01	ci right 2.957755e-01	k: 2868	n:10000
LSM14A   10000 perm   2 sec   (5500 perm/sec)   p_kst 2.868000e-01   p_cons 8.518000e-01   p_joint 4.766000e-01

Outputting figure to mutsig2_images.part000000000099/LSM14A.6_1460_10000_0.2868_0.8518_0.4766.png
                gene_name: LSM14A
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 40 percent done.
LRRC17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.114064e-02	ci left: 3.605262e-01	ci right 3.795496e-01	k: 3700	n:10000
Cons ci ratio: 1.201483e-01	ci left: 9.039166e-02	ci right 1.020448e-01	k: 961	n:10000
KS ci ratio: 1.018770e-02	ci left: 9.318524e-01	ci right 9.414913e-01	k: 9368	n:10000
LRRC17   10000 perm   2 sec   (5860 perm/sec)   p_kst 9.368000e-01   p_cons 9.610000e-02   p_joint 3.700000e-01

Joint ci ratio: 3.929131e-02	ci left: 3.257219e-01	ci right 3.388269e-01	k: 6645	n:20000
Cons ci ratio: 8.537731e-02	ci left: 9.126462e-02	ci right 9.945345e-02	k: 1906	n:20000
KS ci ratio: 7.082428e-03	ci left: 9.353375e-01	ci right 9.420343e-01	k: 18775	n:20000
LRRC17   20000 perm   4 sec   (5264 perm/sec)   p_kst 9.387500e-01   p_cons 9.530000e-02   p_joint 3.322500e-01

Outputting figure to mutsig2_images.part000000000099/LRRC17.5_1356_20000_0.93875_0.0953_0.33225.png
                gene_name: LRRC17
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 41 percent done.
LRRC30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.237119e-02	ci left: 4.512924e-01	ci right 4.709303e-01	k: 4611	n:10000
Cons ci ratio: 6.180047e-02	ci left: 2.779488e-01	ci right 2.957755e-01	k: 2868	n:10000
KS ci ratio: 4.124628e-02	ci left: 4.646716e-01	ci right 4.843433e-01	k: 4745	n:10000
LRRC30   10000 perm   2 sec   (5766 perm/sec)   p_kst 4.745000e-01   p_cons 2.868000e-01   p_joint 4.611000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC30.5_910_10000_0.4745_0.2868_0.4611.png
                gene_name: LRRC30
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 43 percent done.
LRRC33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.350497e-01	ci left: 7.242987e-02	ci right 8.301768e-02	k: 776	n:10000
Cons ci ratio: 1.288571e-01	ci left: 7.921726e-02	ci right 9.022608e-02	k: 846	n:10000
KS ci ratio: 1.610905e-01	ci left: 5.138109e-02	ci right 6.047977e-02	k: 558	n:10000
LRRC33   10000 perm   2 sec   (5765 perm/sec)   p_kst 5.580000e-02   p_cons 8.460000e-02   p_joint 7.760000e-02

Joint ci ratio: 1.285902e-01	ci left: 4.153824e-02	ci right 4.729516e-02	k: 887	n:20000
Cons ci ratio: 9.097100e-02	ci left: 8.107257e-02	ci right 8.884859e-02	k: 1698	n:20000
KS ci ratio: 1.134279e-01	ci left: 5.314517e-02	ci right 5.958457e-02	k: 1126	n:20000
LRRC33   20000 perm   4 sec   (5165 perm/sec)   p_kst 5.630000e-02   p_cons 8.490000e-02   p_joint 4.435000e-02

Joint ci ratio: 9.563391e-02	ci left: 5.049159e-02	ci right 5.559541e-02	k: 1590	n:30000
Cons ci ratio: 7.423823e-02	ci left: 8.186784e-02	ci right 8.821279e-02	k: 2550	n:30000
KS ci ratio: 9.259969e-02	ci left: 5.375070e-02	ci right 5.900230e-02	k: 1690	n:30000
LRRC33   30000 perm   6 sec   (4940 perm/sec)   p_kst 5.633333e-02   p_cons 8.500000e-02   p_joint 5.300000e-02

Outputting figure to mutsig2_images.part000000000099/LRRC33.5_2087_30000_0.056333_0.085_0.053.png
                gene_name: LRRC33
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.056 

Current progress: 45 percent done.
LRRC40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.320203e-02	ci left: 1.432503e-01	ci right 1.573541e-01	k: 1502	n:10000
Cons ci ratio: 7.485634e-03	ci left: 9.611050e-01	ci right 9.684210e-01	k: 9649	n:10000
KS ci ratio: 1.478182e-01	ci left: 6.082454e-02	ci right 7.063030e-02	k: 656	n:10000
LRRC40   10000 perm   2 sec   (5876 perm/sec)   p_kst 6.560000e-02   p_cons 9.649000e-01   p_joint 1.502000e-01

Joint ci ratio: 7.093896e-02	ci left: 1.277315e-01	ci right 1.371756e-01	k: 2648	n:20000
Cons ci ratio: 5.002386e-03	ci left: 9.659852e-01	ci right 9.708774e-01	k: 19370	n:20000
KS ci ratio: 1.057804e-01	ci left: 6.084156e-02	ci right 6.768579e-02	k: 1284	n:20000
LRRC40   20000 perm   4 sec   (5282 perm/sec)   p_kst 6.420000e-02   p_cons 9.685000e-01   p_joint 1.324000e-01

Joint ci ratio: 6.145235e-02	ci left: 1.157510e-01	ci right 1.231228e-01	k: 3582	n:30000
Cons ci ratio: 4.070098e-03	ci left: 9.666670e-01	ci right 9.706416e-01	k: 29061	n:30000
KS ci ratio: 8.640586e-02	ci left: 6.141936e-02	ci right 6.699874e-02	k: 1925	n:30000
LRRC40   30000 perm   6 sec   (5062 perm/sec)   p_kst 6.416667e-02   p_cons 9.687000e-01   p_joint 1.194000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC40.5_1869_30000_0.064167_0.9687_0.1194.png
                gene_name: LRRC40
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 47 percent done.
LRRC8D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.470120e-02	ci left: 3.299187e-01	ci right 3.485750e-01	k: 3392	n:10000
Cons ci ratio: 6.430867e-02	ci left: 2.621082e-01	ci right 2.796255e-01	k: 2708	n:10000
KS ci ratio: 5.062909e-02	ci left: 3.652005e-01	ci right 3.842725e-01	k: 3747	n:10000
LRRC8D   10000 perm   2 sec   (5372 perm/sec)   p_kst 3.747000e-01   p_cons 2.708000e-01   p_joint 3.392000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC8D.5_2581_10000_0.3747_0.2708_0.3392.png
                gene_name: LRRC8D
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 48 percent done.
LRRTM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.841808e-02	ci left: 5.001504e-01	ci right 5.198437e-01	k: 5100	n:10000
Cons ci ratio: 1.673316e-02	ci left: 8.386731e-01	ci right 8.529249e-01	k: 8459	n:10000
KS ci ratio: 5.353840e-02	ci left: 3.395535e-01	ci right 3.583346e-01	k: 3489	n:10000
LRRTM3   10000 perm   2 sec   (5368 perm/sec)   p_kst 3.489000e-01   p_cons 8.459000e-01   p_joint 5.100000e-01

Outputting figure to mutsig2_images.part000000000099/LRRTM3.5_1758_10000_0.3489_0.8459_0.51.png
                gene_name: LRRTM3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 50 percent done.
LRRC18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.913041e-02	ci left: 2.348172e-01	ci right 2.517326e-01	k: 2432	n:10000
Cons ci ratio: 1.224924e-02	ci left: 9.053515e-01	ci right 9.166077e-01	k: 9111	n:10000
KS ci ratio: 1.047174e-01	ci left: 1.164278e-01	ci right 1.293928e-01	k: 1228	n:10000
LRRC18   10000 perm   2 sec   (6126 perm/sec)   p_kst 1.228000e-01   p_cons 9.111000e-01   p_joint 2.432000e-01

Joint ci ratio: 4.985136e-02	ci left: 2.302280e-01	ci right 2.420488e-01	k: 4722	n:20000
Cons ci ratio: 8.758462e-03	ci left: 9.051842e-01	ci right 9.131964e-01	k: 18185	n:20000
KS ci ratio: 7.358769e-02	ci left: 1.196590e-01	ci right 1.288505e-01	k: 2484	n:20000
LRRC18   20000 perm   4 sec   (5501 perm/sec)   p_kst 1.242000e-01   p_cons 9.092500e-01   p_joint 2.361000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC18.4_794_20000_0.1242_0.90925_0.2361.png
                gene_name: LRRC18
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 52 percent done.
LRRC37A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.308071e-01	ci left: 7.698582e-02	ci right 8.785890e-02	k: 823	n:10000
Cons ci ratio: 6.326741e-03	ci left: 9.714304e-01	ci right 9.776890e-01	k: 9747	n:10000
KS ci ratio: 2.115267e-01	ci left: 2.968021e-02	ci right 3.679509e-02	k: 331	n:10000
LRRC37A3   10000 perm   2 sec   (4504 perm/sec)   p_kst 3.310000e-02   p_cons 9.747000e-01   p_joint 8.230000e-02

Joint ci ratio: 8.859824e-02	ci left: 8.518666e-02	ci right 9.313326e-02	k: 1782	n:20000
Cons ci ratio: 4.599203e-03	ci left: 9.709188e-01	ci right 9.754422e-01	k: 19465	n:20000
KS ci ratio: 1.501612e-01	ci left: 3.047099e-02	ci right 3.546599e-02	k: 658	n:20000
LRRC37A3   20000 perm   5 sec   (4103 perm/sec)   p_kst 3.290000e-02   p_cons 9.732500e-01   p_joint 8.910000e-02

Joint ci ratio: 7.122782e-02	ci left: 8.842441e-02	ci right 9.498825e-02	k: 2750	n:30000
Cons ci ratio: 3.752991e-03	ci left: 9.713782e-01	ci right 9.750627e-01	k: 29198	n:30000
KS ci ratio: 1.236128e-01	ci left: 3.042513e-02	ci right 3.446608e-02	k: 972	n:30000
LRRC37A3   30000 perm   8 sec   (3985 perm/sec)   p_kst 3.240000e-02   p_cons 9.732667e-01   p_joint 9.166667e-02

Joint ci ratio: 6.848730e-02	ci left: 7.310154e-02	ci right 7.831026e-02	k: 3027	n:40000
Cons ci ratio: 3.216304e-03	ci left: 9.721874e-01	ci right 9.753434e-01	k: 38952	n:40000
KS ci ratio: 1.057670e-01	ci left: 3.144137e-02	ci right 3.497682e-02	k: 1327	n:40000
LRRC37A3   40000 perm   10 sec   (3898 perm/sec)   p_kst 3.317500e-02   p_cons 9.738000e-01   p_joint 7.567500e-02

Joint ci ratio: 6.735712e-02	ci left: 6.129916e-02	ci right 6.559170e-02	k: 3171	n:50000
Cons ci ratio: 2.867479e-03	ci left: 9.725263e-01	ci right 9.753383e-01	k: 48698	n:50000
KS ci ratio: 9.519590e-02	ci left: 3.123643e-02	ci right 3.437811e-02	k: 1639	n:50000
LRRC37A3   50000 perm   13 sec   (3712 perm/sec)   p_kst 3.278000e-02   p_cons 9.739600e-01   p_joint 6.342000e-02

Outputting figure to mutsig2_images.part000000000099/LRRC37A3.4_4953_50000_0.03278_0.97396_0.06342.png
                gene_name: LRRC37A3
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.066 

Current progress: 53 percent done.
LRRC43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.663749e-03	ci left: 9.685759e-01	ci right 9.751453e-01	k: 9720	n:10000
Cons ci ratio: 3.219686e-02	ci left: 5.874096e-01	ci right 6.067338e-01	k: 5971	n:10000
KS ci ratio: 3.272134e-02	ci left: 5.795829e-01	ci right 5.989651e-01	k: 5893	n:10000
LRRC43   10000 perm   2 sec   (5580 perm/sec)   p_kst 5.893000e-01   p_cons 5.971000e-01   p_joint 9.720000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC43.4_2019_10000_0.5893_0.5971_0.972.png
                gene_name: LRRC43
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 55 percent done.
LRRC50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.508942e-02	ci left: 5.452950e-01	ci right 5.648729e-01	k: 5551	n:10000
Cons ci ratio: 8.051746e-02	ci left: 1.838286e-01	ci right 1.993515e-01	k: 1915	n:10000
KS ci ratio: 3.510363e-02	ci left: 5.450946e-01	ci right 5.646734e-01	k: 5549	n:10000
LRRC50   10000 perm   2 sec   (5003 perm/sec)   p_kst 5.549000e-01   p_cons 1.915000e-01   p_joint 5.551000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC50.4_2226_10000_0.5549_0.1915_0.5551.png
                gene_name: LRRC50
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.56 

Current progress: 57 percent done.
LRRC52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.541967e-01	ci left: 5.600212e-02	ci right 6.545578e-02	k: 606	n:10000
Cons ci ratio: 4.479208e-01	ci left: 5.903663e-03	ci right 9.392367e-03	k: 75	n:10000
KS ci ratio: 3.449668e-02	ci left: 5.537122e-01	ci right 5.732508e-01	k: 5635	n:10000
LRRC52   10000 perm   2 sec   (5475 perm/sec)   p_kst 5.635000e-01   p_cons 7.500000e-03   p_joint 6.060000e-02

Joint ci ratio: 1.375911e-01	ci left: 3.631082e-02	ci right 4.172425e-02	k: 779	n:20000
Cons ci ratio: 3.096304e-01	ci left: 6.720018e-03	ci right 9.226206e-03	k: 158	n:20000
KS ci ratio: 2.496461e-02	ci left: 5.451760e-01	ci right 5.590088e-01	k: 11042	n:20000
LRRC52   20000 perm   4 sec   (5093 perm/sec)   p_kst 5.521000e-01   p_cons 7.900000e-03   p_joint 3.895000e-02

Joint ci ratio: 8.293876e-02	ci left: 6.641864e-02	ci right 7.219844e-02	k: 2078	n:30000
Cons ci ratio: 2.401915e-01	ci left: 7.742931e-03	ci right 9.887152e-03	k: 263	n:30000
KS ci ratio: 2.078130e-02	ci left: 5.368754e-01	ci right 5.481831e-01	k: 16276	n:30000
LRRC52   30000 perm   6 sec   (4976 perm/sec)   p_kst 5.425333e-01   p_cons 8.766667e-03   p_joint 6.926667e-02

Joint ci ratio: 8.262309e-02	ci left: 5.106962e-02	ci right 5.549551e-02	k: 2130	n:40000
Cons ci ratio: 2.110586e-01	ci left: 7.647359e-03	ci right 9.475061e-03	k: 341	n:40000
KS ci ratio: 1.800942e-02	ci left: 5.373022e-01	ci right 5.470917e-01	k: 21688	n:40000
LRRC52   40000 perm   8 sec   (4880 perm/sec)   p_kst 5.422000e-01   p_cons 8.525000e-03   p_joint 5.325000e-02

Joint ci ratio: 6.253533e-02	ci left: 7.057699e-02	ci right 7.515275e-02	k: 3642	n:50000
Cons ci ratio: 1.911592e-01	ci left: 7.542470e-03	ci right 9.155393e-03	k: 416	n:50000
KS ci ratio: 1.613615e-02	ci left: 5.369601e-01	ci right 5.457151e-01	k: 27067	n:50000
LRRC52   50000 perm   10 sec   (4786 perm/sec)   p_kst 5.413400e-01   p_cons 8.320000e-03   p_joint 7.284000e-02

Joint ci ratio: 6.903276e-02	ci left: 4.923671e-02	ci right 5.277355e-02	k: 3059	n:60000
Cons ci ratio: 1.763615e-01	ci left: 7.446130e-03	ci right 8.902045e-03	k: 489	n:60000
KS ci ratio: 1.469739e-02	ci left: 5.384534e-01	ci right 5.464425e-01	k: 32547	n:60000
LRRC52   60000 perm   13 sec   (4673 perm/sec)   p_kst 5.424500e-01   p_cons 8.150000e-03   p_joint 5.098333e-02

Joint ci ratio: 7.258382e-02	ci left: 3.854626e-02	ci right 4.146346e-02	k: 2799	n:70000
Cons ci ratio: 1.655823e-01	ci left: 7.284886e-03	ci right 8.613531e-03	k: 555	n:70000
KS ci ratio: 1.358507e-02	ci left: 5.395582e-01	ci right 5.469525e-01	k: 38028	n:70000
LRRC52   70000 perm   15 sec   (4549 perm/sec)   p_kst 5.432571e-01   p_cons 7.928571e-03   p_joint 3.998571e-02

Joint ci ratio: 7.591984e-02	ci left: 3.102427e-02	ci right 3.348480e-02	k: 2579	n:80000
Cons ci ratio: 1.553111e-01	ci left: 7.286159e-03	ci right 8.524927e-03	k: 631	n:80000
KS ci ratio: 1.273448e-02	ci left: 5.387524e-01	ci right 5.456696e-01	k: 43377	n:80000
LRRC52   80000 perm   18 sec   (4468 perm/sec)   p_kst 5.422125e-01   p_cons 7.887500e-03   p_joint 3.223750e-02

Joint ci ratio: 6.795401e-02	ci left: 3.444260e-02	ci right 3.687633e-02	k: 3208	n:90000
Cons ci ratio: 1.457076e-01	ci left: 7.396211e-03	ci right 8.569168e-03	k: 717	n:90000
KS ci ratio: 1.199415e-02	ci left: 5.394496e-01	ci right 5.459699e-01	k: 48844	n:90000
LRRC52   90000 perm   20 sec   (4399 perm/sec)   p_kst 5.427111e-01   p_cons 7.966667e-03   p_joint 3.564444e-02

Joint ci ratio: 6.858910e-02	ci left: 3.054405e-02	ci right 3.272323e-02	k: 3162	n:100000
Cons ci ratio: 1.403545e-01	ci left: 7.196500e-03	ci right 8.292342e-03	k: 773	n:100000
KS ci ratio: 1.137617e-02	ci left: 5.397262e-01	ci right 5.459113e-01	k: 54282	n:100000
LRRC52   100000 perm   23 sec   (4325 perm/sec)   p_kst 5.428200e-01   p_cons 7.730000e-03   p_joint 3.162000e-02

Joint ci ratio: 6.452425e-02	ci left: 3.141515e-02	ci right 3.351868e-02	k: 3570	n:110000
Cons ci ratio: 1.341726e-01	ci left: 7.183122e-03	ci right 8.224904e-03	k: 846	n:110000
KS ci ratio: 1.084005e-02	ci left: 5.401779e-01	ci right 5.460744e-01	k: 59744	n:110000
LRRC52   110000 perm   26 sec   (4252 perm/sec)   p_kst 5.431273e-01   p_cons 7.690909e-03   p_joint 3.245455e-02

Joint ci ratio: 6.146517e-02	ci left: 3.177476e-02	ci right 3.379790e-02	k: 3933	n:120000
Cons ci ratio: 1.273540e-01	ci left: 7.334223e-03	ci right 8.339780e-03	k: 939	n:120000
KS ci ratio: 1.035842e-02	ci left: 5.412685e-01	ci right 5.469127e-01	k: 65291	n:120000
LRRC52   120000 perm   29 sec   (4188 perm/sec)   p_kst 5.440917e-01   p_cons 7.825000e-03   p_joint 3.277500e-02

Joint ci ratio: 5.900972e-02	ci left: 3.186112e-02	ci right 3.380595e-02	k: 4267	n:130000
Cons ci ratio: 1.213608e-01	ci left: 7.478130e-03	ci right 8.451703e-03	k: 1034	n:130000
KS ci ratio: 9.955899e-03	ci left: 5.411877e-01	ci right 5.466103e-01	k: 70707	n:130000
LRRC52   130000 perm   31 sec   (4129 perm/sec)   p_kst 5.439000e-01   p_cons 7.953846e-03   p_joint 3.282308e-02

Joint ci ratio: 5.718109e-02	ci left: 3.154908e-02	ci right 3.341320e-02	k: 4546	n:140000
Cons ci ratio: 1.172976e-01	ci left: 7.449837e-03	ci right 8.385002e-03	k: 1107	n:140000
KS ci ratio: 9.605082e-03	ci left: 5.407006e-01	ci right 5.459262e-01	k: 76064	n:140000
LRRC52   140000 perm   34 sec   (4067 perm/sec)   p_kst 5.433143e-01   p_cons 7.907143e-03   p_joint 3.247143e-02

Joint ci ratio: 5.402641e-02	ci left: 3.298986e-02	ci right 3.482822e-02	k: 5085	n:150000
Cons ci ratio: 1.138114e-01	ci left: 7.399875e-03	ci right 8.299305e-03	k: 1176	n:150000
KS ci ratio: 9.285026e-03	ci left: 5.404883e-01	ci right 5.455367e-01	k: 81452	n:150000
LRRC52   150000 perm   37 sec   (4008 perm/sec)   p_kst 5.430133e-01   p_cons 7.840000e-03   p_joint 3.390000e-02

Joint ci ratio: 5.322695e-02	ci left: 3.191410e-02	ci right 3.366538e-02	k: 5245	n:160000
Cons ci ratio: 1.102624e-01	ci left: 7.405149e-03	ci right 8.275328e-03	k: 1253	n:160000
KS ci ratio: 8.994397e-03	ci left: 5.403364e-01	ci right 5.452246e-01	k: 86845	n:160000
LRRC52   160000 perm   41 sec   (3948 perm/sec)   p_kst 5.427812e-01   p_cons 7.831250e-03   p_joint 3.278125e-02

Joint ci ratio: 5.164193e-02	ci left: 3.193512e-02	ci right 3.363380e-02	k: 5572	n:170000
Cons ci ratio: 1.071884e-01	ci left: 7.387283e-03	ci right 8.229633e-03	k: 1326	n:170000
KS ci ratio: 8.721179e-03	ci left: 5.406754e-01	ci right 5.454172e-01	k: 92318	n:170000
LRRC52   170000 perm   44 sec   (3894 perm/sec)   p_kst 5.430471e-01   p_cons 7.800000e-03   p_joint 3.277647e-02

Joint ci ratio: 6.136643e-02	ci left: 2.148599e-02	ci right 2.285169e-02	k: 3989	n:180000
Cons ci ratio: 1.099581e-01	ci left: 6.625428e-03	ci right 7.401688e-03	k: 1261	n:180000
KS ci ratio: 8.477029e-03	ci left: 5.406508e-01	ci right 5.452589e-01	k: 97732	n:180000
LRRC52   180000 perm   47 sec   (3839 perm/sec)   p_kst 5.429556e-01   p_cons 7.005556e-03   p_joint 2.216111e-02

Joint ci ratio: 6.038295e-02	ci left: 2.104434e-02	ci right 2.235978e-02	k: 4122	n:190000
Cons ci ratio: 1.063089e-01	ci left: 6.727372e-03	ci right 7.487783e-03	k: 1349	n:190000
KS ci ratio: 8.253787e-03	ci left: 5.405410e-01	ci right 5.450262e-01	k: 103129	n:190000
LRRC52   190000 perm   50 sec   (3786 perm/sec)   p_kst 5.427842e-01   p_cons 7.100000e-03   p_joint 2.169474e-02

Joint ci ratio: 5.471164e-02	ci left: 2.433989e-02	ci right 2.571393e-02	k: 5004	n:200000
Cons ci ratio: 1.035091e-01	ci left: 6.751300e-03	ci right 7.493094e-03	k: 1423	n:200000
KS ci ratio: 8.091741e-03	ci left: 5.377076e-01	ci right 5.420812e-01	k: 107979	n:200000
LRRC52   200000 perm   54 sec   (3736 perm/sec)   p_kst 5.398950e-01   p_cons 7.115000e-03   p_joint 2.502000e-02

Joint ci ratio: 5.366737e-02	ci left: 2.411085e-02	ci right 2.544517e-02	k: 5202	n:210000
Cons ci ratio: 1.010213e-01	ci left: 6.759259e-03	ci right 7.483018e-03	k: 1494	n:210000
KS ci ratio: 7.895746e-03	ci left: 5.378226e-01	ci right 5.420906e-01	k: 113391	n:210000
LRRC52   210000 perm   57 sec   (3659 perm/sec)   p_kst 5.399571e-01   p_cons 7.114286e-03   p_joint 2.477143e-02

Joint ci ratio: 5.301359e-02	ci left: 2.360673e-02	ci right 2.489675e-02	k: 5334	n:220000
Cons ci ratio: 9.870474e-02	ci left: 6.766688e-03	ci right 7.473665e-03	k: 1565	n:220000
KS ci ratio: 7.719689e-03	ci left: 5.375190e-01	ci right 5.416890e-01	k: 118713	n:220000
LRRC52   220000 perm   61 sec   (3592 perm/sec)   p_kst 5.396045e-01   p_cons 7.113636e-03   p_joint 2.424545e-02

Outputting figure to mutsig2_images.part000000000099/LRRC52.4_950_220000_0.5396_0.0071136_0.024245.png
                gene_name: LRRC52
               theta_stop: 0.099 
                    nperm: 220000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.0071 
      ci_cons_bounds_left: 0.0068 
     ci_cons_bounds_right: 0.0075 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.025 

Current progress: 59 percent done.
LRRFIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.067200e-02	ci left: 2.854779e-01	ci right 3.034419e-01	k: 2944	n:10000
Cons ci ratio: 4.612326e-02	ci left: 4.096033e-01	ci right 4.290437e-01	k: 4193	n:10000
KS ci ratio: 6.719645e-02	ci left: 2.452932e-01	ci right 2.624504e-01	k: 2538	n:10000
LRRFIP1   10000 perm   2 sec   (5108 perm/sec)   p_kst 2.538000e-01   p_cons 4.193000e-01   p_joint 2.944000e-01

Outputting figure to mutsig2_images.part000000000099/LRRFIP1.4_3631_10000_0.2538_0.4193_0.2944.png
                gene_name: LRRFIP1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 60 percent done.
LRRIQ4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.690770e-02	ci left: 6.704536e-01	ci right 6.888416e-01	k: 6797	n:10000
KS ci ratio: 2.481456e-02	ci left: 7.049308e-01	ci right 7.227445e-01	k: 7139	n:10000
LRRIQ4   10000 perm   2 sec   (4751 perm/sec)   p_kst 7.139000e-01   p_cons 6.797000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRIQ4.4_1703_10000_0.7139_0.6797_1.png
                gene_name: LRRIQ4
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
LRRC20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.731953e-02	ci left: 8.293074e-01	ci right 8.438960e-01	k: 8367	n:10000
KS ci ratio: 1.325114e-02	ci left: 8.913891e-01	ci right 9.033783e-01	k: 8975	n:10000
LRRC20   10000 perm   2 sec   (4422 perm/sec)   p_kst 8.975000e-01   p_cons 8.367000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRC20.3_571_10000_0.8975_0.8367_1.png
                gene_name: LRRC20
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
LRRC59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.055786e-02	ci left: 7.761063e-01	ci right 7.923278e-01	k: 7843	n:10000
Cons ci ratio: 3.623340e-02	ci left: 5.293701e-01	ci right 5.490070e-01	k: 5392	n:10000
KS ci ratio: 3.818054e-02	ci left: 5.032509e-01	ci right 5.229414e-01	k: 5131	n:10000
LRRC59   10000 perm   2 sec   (5130 perm/sec)   p_kst 5.131000e-01   p_cons 5.392000e-01   p_joint 7.843000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC59.3_952_10000_0.5131_0.5392_0.7843.png
                gene_name: LRRC59
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 66 percent done.
LSAMP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.481713e-02	ci left: 2.590407e-01	ci right 2.764948e-01	k: 2677	n:10000
Cons ci ratio: 2.011077e-01	ci left: 3.291000e-02	ci right 4.036307e-02	k: 365	n:10000
KS ci ratio: 2.397226e-02	ci left: 7.189609e-01	ci right 7.365063e-01	k: 7278	n:10000
LSAMP   10000 perm   2 sec   (6596 perm/sec)   p_kst 7.278000e-01   p_cons 3.650000e-02   p_joint 2.677000e-01

Joint ci ratio: 7.008745e-02	ci left: 1.304894e-01	ci right 1.400170e-01	k: 2704	n:20000
Cons ci ratio: 1.406204e-01	ci left: 3.476452e-02	ci right 4.007106e-02	k: 747	n:20000
KS ci ratio: 1.686784e-02	ci left: 7.235373e-01	ci right 7.358959e-01	k: 14595	n:20000
LSAMP   20000 perm   4 sec   (5371 perm/sec)   p_kst 7.297500e-01   p_cons 3.735000e-02   p_joint 1.352000e-01

Joint ci ratio: 6.180548e-02	ci left: 1.145672e-01	ci right 1.219069e-01	k: 3546	n:30000
Cons ci ratio: 1.141318e-01	ci left: 3.567012e-02	ci right 4.001997e-02	k: 1134	n:30000
KS ci ratio: 1.378716e-02	ci left: 7.242669e-01	ci right 7.343553e-01	k: 21880	n:30000
LSAMP   30000 perm   6 sec   (4800 perm/sec)   p_kst 7.293333e-01   p_cons 3.780000e-02   p_joint 1.182000e-01

Joint ci ratio: 4.140279e-02	ci left: 1.792709e-01	ci right 1.868751e-01	k: 7322	n:40000
Cons ci ratio: 9.898880e-02	ci left: 3.585456e-02	ci right 3.961294e-02	k: 1508	n:40000
KS ci ratio: 1.199779e-02	ci left: 7.230324e-01	ci right 7.317846e-01	k: 29097	n:40000
LSAMP   40000 perm   9 sec   (4649 perm/sec)   p_kst 7.274250e-01   p_cons 3.770000e-02   p_joint 1.830500e-01

Outputting figure to mutsig2_images.part000000000099/LSAMP.3_1045_40000_0.72742_0.0377_0.18305.png
                gene_name: LSAMP
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 67 percent done.
LSM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.654654e-02	ci left: 2.489515e-01	ci right 2.661899e-01	k: 2575	n:10000
KS ci ratio: 3.126171e-02	ci left: 6.015643e-01	ci right 6.207708e-01	k: 6112	n:10000
LSM1   10000 perm   2 sec   (6505 perm/sec)   p_kst 6.112000e-01   p_cons 2.575000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LSM1.3_418_10000_0.6112_0.2575_1.png
                gene_name: LSM1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
LRRC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.410615e-02	ci left: 8.789942e-01	ci right 8.915804e-01	k: 8854	n:10000
KS ci ratio: 1.804305e-02	ci left: 8.176118e-01	ci right 8.325984e-01	k: 8252	n:10000
LRRC15   10000 perm   2 sec   (6328 perm/sec)   p_kst 8.252000e-01   p_cons 8.854000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRC15.2_1772_10000_0.8252_0.8854_1.png
                gene_name: LRRC15
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
LRRC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.299120e-02	ci left: 1.747761e-01	ci right 1.900094e-01	k: 1823	n:10000
Cons ci ratio: 1.309804e-01	ci left: 7.679184e-02	ci right 8.765300e-02	k: 821	n:10000
KS ci ratio: 3.828764e-02	ci left: 5.018507e-01	ci right 5.215425e-01	k: 5117	n:10000
LRRC2   10000 perm   2 sec   (5225 perm/sec)   p_kst 5.117000e-01   p_cons 8.210000e-02   p_joint 1.823000e-01

Joint ci ratio: 5.961589e-02	ci left: 1.724244e-01	ci right 1.830695e-01	k: 3554	n:20000
Cons ci ratio: 9.358373e-02	ci left: 7.686346e-02	ci right 8.445898e-02	k: 1612	n:20000
KS ci ratio: 2.692683e-02	ci left: 5.074967e-01	ci right 5.213991e-01	k: 10289	n:20000
LRRC2   20000 perm   4 sec   (5203 perm/sec)   p_kst 5.144500e-01   p_cons 8.060000e-02   p_joint 1.777000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC2.2_1148_20000_0.51445_0.0806_0.1777.png
                gene_name: LRRC2
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 72 percent done.
LRRC25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.526458e-02	ci left: 6.974658e-01	ci right 7.154138e-01	k: 7065	n:10000
Cons ci ratio: 2.745299e-02	ci left: 6.615916e-01	ci right 6.801087e-01	k: 6709	n:10000
KS ci ratio: 2.577101e-02	ci left: 6.890962e-01	ci right 7.071882e-01	k: 6982	n:10000
LRRC25   10000 perm   1 sec   (7093 perm/sec)   p_kst 6.982000e-01   p_cons 6.709000e-01   p_joint 7.065000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC25.2_926_10000_0.6982_0.6709_0.7065.png
                gene_name: LRRC25
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 74 percent done.
LRRC27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.584476e-02	ci left: 8.526363e-01	ci right 8.663535e-01	k: 8596	n:10000
KS ci ratio: 2.533769e-02	ci left: 6.962555e-01	ci right 7.142248e-01	k: 7053	n:10000
LRRC27   10000 perm   2 sec   (6405 perm/sec)   p_kst 7.053000e-01   p_cons 8.596000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRC27.2_1815_10000_0.7053_0.8596_1.png
                gene_name: LRRC27
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
LRRC28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.783900e-02	ci left: 1.943656e-01	ci right 2.102082e-01	k: 2022	n:10000
Cons ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
KS ci ratio: 4.800080e-02	ci left: 3.903785e-01	ci right 4.096798e-01	k: 4000	n:10000
LRRC28   10000 perm   1 sec   (7000 perm/sec)   p_kst 4.000000e-01   p_cons 4.130000e-02   p_joint 2.022000e-01

Joint ci ratio: 3.635250e-02	ci left: 3.609125e-01	ci right 3.743260e-01	k: 7352	n:20000
Cons ci ratio: 1.320512e-01	ci left: 3.940703e-02	ci right 4.502705e-02	k: 843	n:20000
KS ci ratio: 3.401221e-02	ci left: 3.922533e-01	ci right 4.058761e-01	k: 7981	n:20000
LRRC28   20000 perm   3 sec   (6016 perm/sec)   p_kst 3.990500e-01   p_cons 4.215000e-02   p_joint 3.676000e-01

Joint ci ratio: 8.266141e-02	ci left: 6.684362e-02	ci right 7.264003e-02	k: 2091	n:30000
Cons ci ratio: 1.075985e-01	ci left: 4.008265e-02	ci right 4.467317e-02	k: 1270	n:30000
KS ci ratio: 2.793356e-02	ci left: 3.907254e-01	ci right 4.018280e-01	k: 11888	n:30000
LRRC28   30000 perm   5 sec   (5746 perm/sec)   p_kst 3.962667e-01   p_cons 4.233333e-02   p_joint 6.970000e-02

Joint ci ratio: 2.589546e-02	ci left: 3.594818e-01	ci right 3.689379e-01	k: 14568	n:40000
Cons ci ratio: 9.317384e-02	ci left: 4.039724e-02	ci right 4.436955e-02	k: 1694	n:40000
KS ci ratio: 2.417093e-02	ci left: 3.918760e-01	ci right 4.014890e-01	k: 15867	n:40000
LRRC28   40000 perm   7 sec   (5550 perm/sec)   p_kst 3.966750e-01   p_cons 4.235000e-02   p_joint 3.642000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC28.2_1140_40000_0.39667_0.04235_0.3642.png
                gene_name: LRRC28
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 78 percent done.
LRRC32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.896174e-02	ci left: 8.025773e-01	ci right 8.180415e-01	k: 8104	n:10000
Cons ci ratio: 2.600967e-02	ci left: 6.851647e-01	ci right 7.033220e-01	k: 6943	n:10000
KS ci ratio: 5.632616e-02	ci left: 3.170130e-01	ci right 3.354883e-01	k: 3262	n:10000
LRRC32   10000 perm   2 sec   (6400 perm/sec)   p_kst 3.262000e-01   p_cons 6.943000e-01   p_joint 8.104000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC32.2_1997_10000_0.3262_0.6943_0.8104.png
                gene_name: LRRC32
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 79 percent done.
LRRC36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.448967e-02	ci left: 5.538124e-01	ci right 5.733505e-01	k: 5636	n:10000
KS ci ratio: 1.646289e-02	ci left: 8.429516e-01	ci right 8.570439e-01	k: 8501	n:10000
LRRC36   10000 perm   2 sec   (6266 perm/sec)   p_kst 8.501000e-01   p_cons 5.636000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000099/LRRC36.2_2349_10000_0.8501_0.5636_1.png
                gene_name: LRRC36
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
LRRC37B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.502147e-02	ci left: 8.652935e-01	ci right 8.784890e-01	k: 8720	n:10000
Cons ci ratio: 5.781958e-02	ci left: 3.057022e-01	ci right 3.240057e-01	k: 3148	n:10000
KS ci ratio: 1.624928e-02	ci left: 8.463146e-01	ci right 8.602789e-01	k: 8534	n:10000
LRRC37B   10000 perm   2 sec   (5859 perm/sec)   p_kst 8.534000e-01   p_cons 3.148000e-01   p_joint 8.720000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC37B.2_2892_10000_0.8534_0.3148_0.872.png
                gene_name: LRRC37B
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 83 percent done.
LRRC39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.816456e-02	ci left: 6.501168e-01	ci right 6.687903e-01	k: 6595	n:10000
Cons ci ratio: 3.136703e-02	ci left: 5.999577e-01	ci right 6.191784e-01	k: 6096	n:10000
KS ci ratio: 1.198728e-01	ci left: 9.078082e-02	ci right 1.024554e-01	k: 965	n:10000
LRRC39   10000 perm   1 sec   (6768 perm/sec)   p_kst 9.650000e-02   p_cons 6.096000e-01   p_joint 6.595000e-01

Joint ci ratio: 2.910361e-02	ci left: 4.686577e-01	ci right 4.825494e-01	k: 9512	n:20000
Cons ci ratio: 2.250383e-02	ci left: 5.958787e-01	ci right 6.094914e-01	k: 12054	n:20000
KS ci ratio: 8.371335e-02	ci left: 9.464903e-02	ci right 1.029680e-01	k: 1975	n:20000
LRRC39   20000 perm   3 sec   (6009 perm/sec)   p_kst 9.875000e-02   p_cons 6.027000e-01   p_joint 4.756000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC39.2_1040_20000_0.09875_0.6027_0.4756.png
                gene_name: LRRC39
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 84 percent done.
LRRC4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.279990e-02	ci left: 4.463020e-01	ci right 4.659236e-01	k: 4561	n:10000
Cons ci ratio: 6.161973e-02	ci left: 2.791374e-01	ci right 2.969862e-01	k: 2880	n:10000
KS ci ratio: 1.845427e-02	ci left: 8.109049e-01	ci right 8.261091e-01	k: 8186	n:10000
LRRC4B   10000 perm   2 sec   (6291 perm/sec)   p_kst 8.186000e-01   p_cons 2.880000e-01   p_joint 4.561000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC4B.2_2150_10000_0.8186_0.288_0.4561.png
                gene_name: LRRC4B
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 86 percent done.
LRRC58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.541967e-01	ci left: 5.600212e-02	ci right 6.545578e-02	k: 606	n:10000
Cons ci ratio: 1.092244e-01	ci left: 1.078341e-01	ci right 1.203917e-01	k: 1140	n:10000
KS ci ratio: 1.169468e-01	ci left: 9.506351e-02	ci right 1.069701e-01	k: 1009	n:10000
LRRC58   10000 perm   2 sec   (6495 perm/sec)   p_kst 1.009000e-01   p_cons 1.140000e-01   p_joint 6.060000e-02

Joint ci ratio: 7.717746e-02	ci left: 1.098234e-01	ci right 1.186891e-01	k: 2284	n:20000
Cons ci ratio: 7.754189e-02	ci left: 1.088895e-01	ci right 1.177232e-01	k: 2265	n:20000
KS ci ratio: 8.219848e-02	ci left: 9.788774e-02	ci right 1.063283e-01	k: 2041	n:20000
LRRC58   20000 perm   3 sec   (5736 perm/sec)   p_kst 1.020500e-01   p_cons 1.132500e-01   p_joint 1.142000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC58.2_1132_20000_0.10205_0.11325_0.1142.png
                gene_name: LRRC58
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 88 percent done.
LRRC8C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.675392e-02	ci left: 4.030273e-01	ci right 4.224236e-01	k: 4127	n:10000
Cons ci ratio: 2.977477e-02	ci left: 6.245712e-01	ci right 6.435506e-01	k: 6341	n:10000
KS ci ratio: 4.837274e-02	ci left: 3.866946e-01	ci right 4.059658e-01	k: 3963	n:10000
LRRC8C   10000 perm   2 sec   (5945 perm/sec)   p_kst 3.963000e-01   p_cons 6.341000e-01   p_joint 4.127000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC8C.2_2420_10000_0.3963_0.6341_0.4127.png
                gene_name: LRRC8C
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 90 percent done.
LRRC8E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.636081e-02	ci left: 4.071122e-01	ci right 4.265363e-01	k: 4168	n:10000
Cons ci ratio: 5.494609e-02	ci left: 3.279327e-01	ci right 3.465622e-01	k: 3372	n:10000
KS ci ratio: 7.705195e-02	ci left: 1.976171e-01	ci right 2.135548e-01	k: 2055	n:10000
LRRC8E   10000 perm   2 sec   (5902 perm/sec)   p_kst 2.055000e-01   p_cons 3.372000e-01   p_joint 4.168000e-01

Outputting figure to mutsig2_images.part000000000099/LRRC8E.2_2399_10000_0.2055_0.3372_0.4168.png
                gene_name: LRRC8E
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 91 percent done.
LRTOMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.062005e-01	ci left: 1.134968e-01	ci right 1.263255e-01	k: 1198	n:10000
Cons ci ratio: 6.443915e-02	ci left: 2.613165e-01	ci right 2.788176e-01	k: 2700	n:10000
KS ci ratio: 1.071161e-01	ci left: 1.117389e-01	ci right 1.244845e-01	k: 1180	n:10000
LRTOMT   10000 perm   2 sec   (6531 perm/sec)   p_kst 1.180000e-01   p_cons 2.700000e-01   p_joint 1.198000e-01

Joint ci ratio: 5.573271e-02	ci left: 1.927438e-01	ci right 2.038440e-01	k: 3965	n:20000
Cons ci ratio: 4.354009e-02	ci left: 2.820781e-01	ci right 2.946835e-01	k: 5767	n:20000
KS ci ratio: 7.594459e-02	ci left: 1.130680e-01	ci right 1.220435e-01	k: 2350	n:20000
LRTOMT   20000 perm   3 sec   (5799 perm/sec)   p_kst 1.175000e-01   p_cons 2.883500e-01   p_joint 1.982500e-01

Outputting figure to mutsig2_images.part000000000099/LRTOMT.2_1497_20000_0.1175_0.28835_0.19825.png
                gene_name: LRTOMT
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 93 percent done.
LRWD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.372648e-01	ci left: 7.020239e-02	ci right 8.064655e-02	k: 753	n:10000
Cons ci ratio: 2.180661e-01	ci left: 2.787955e-02	ci right 3.479702e-02	k: 312	n:10000
KS ci ratio: 3.713756e-03	ci left: 9.891692e-01	ci right 9.929363e-01	k: 9912	n:10000
LRWD1   10000 perm   2 sec   (6368 perm/sec)   p_kst 9.912000e-01   p_cons 3.120000e-02   p_joint 7.530000e-02

Joint ci ratio: 1.000734e-01	ci left: 6.767355e-02	ci right 7.485170e-02	k: 1424	n:20000
Cons ci ratio: 1.553563e-01	ci left: 2.844890e-02	ci right 3.328876e-02	k: 616	n:20000
KS ci ratio: 2.376671e-03	ci left: 9.914747e-01	ci right 9.938787e-01	k: 19855	n:20000
LRWD1   20000 perm   4 sec   (5654 perm/sec)   p_kst 9.927500e-01   p_cons 3.080000e-02   p_joint 7.120000e-02

Joint ci ratio: 9.292039e-02	ci left: 5.339206e-02	ci right 5.862767e-02	k: 1679	n:30000
Cons ci ratio: 1.252178e-01	ci left: 2.964928e-02	ci right 3.364210e-02	k: 948	n:30000
KS ci ratio: 1.945083e-03	ci left: 9.916708e-01	ci right 9.936320e-01	k: 29781	n:30000
LRWD1   30000 perm   6 sec   (5369 perm/sec)   p_kst 9.927000e-01   p_cons 3.160000e-02   p_joint 5.596667e-02

Joint ci ratio: 7.643278e-02	ci left: 5.933690e-02	ci right 6.407698e-02	k: 2467	n:40000
Cons ci ratio: 1.083685e-01	ci left: 2.995595e-02	ci right 3.341248e-02	k: 1266	n:40000
KS ci ratio: 1.651428e-03	ci left: 9.921072e-01	ci right 9.937700e-01	k: 39719	n:40000
LRWD1   40000 perm   8 sec   (5186 perm/sec)   p_kst 9.929750e-01   p_cons 3.165000e-02   p_joint 6.167500e-02

Joint ci ratio: 5.413932e-02	ci left: 9.232493e-02	ci right 9.748221e-02	k: 4744	n:50000
Cons ci ratio: 9.657435e-02	ci left: 3.035735e-02	ci right 3.345731e-02	k: 1594	n:50000
KS ci ratio: 1.492845e-03	ci left: 9.920406e-01	ci right 9.935413e-01	k: 49641	n:50000
LRWD1   50000 perm   10 sec   (5039 perm/sec)   p_kst 9.928200e-01   p_cons 3.188000e-02   p_joint 9.488000e-02

Outputting figure to mutsig2_images.part000000000099/LRWD1.2_2004_50000_0.99282_0.03188_0.09488.png
                gene_name: LRWD1
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.097 

Current progress: 95 percent done.
LSG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.683687e-03	ci left: 9.765289e-01	ci right 9.821870e-01	k: 9795	n:10000
Cons ci ratio: 7.612086e-02	ci left: 2.015594e-01	ci right 2.176102e-01	k: 2095	n:10000
KS ci ratio: 1.417551e-02	ci left: 8.779709e-01	ci right 8.906043e-01	k: 8844	n:10000
LSG1   10000 perm   2 sec   (6100 perm/sec)   p_kst 8.844000e-01   p_cons 2.095000e-01   p_joint 9.795000e-01

Outputting figure to mutsig2_images.part000000000099/LSG1.2_2033_10000_0.8844_0.2095_0.9795.png
                gene_name: LSG1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 97 percent done.
LSM11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.356810e-02	ci left: 2.666610e-01	ci right 2.842700e-01	k: 2754	n:10000
Cons ci ratio: 5.917331e-02	ci left: 2.958849e-01	ci right 3.140289e-01	k: 3049	n:10000
KS ci ratio: 9.755860e-02	ci left: 1.321775e-01	ci right 1.458335e-01	k: 1389	n:10000
LSM11   10000 perm   1 sec   (6869 perm/sec)   p_kst 1.389000e-01   p_cons 3.049000e-01   p_joint 2.754000e-01

Outputting figure to mutsig2_images.part000000000099/LSM11.2_1099_10000_0.1389_0.3049_0.2754.png
                gene_name: LSM11
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 98 percent done.
LSM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.505688e-02	ci left: 3.270391e-01	ci right 3.456564e-01	k: 3363	n:10000
Cons ci ratio: 1.093325e-01	ci left: 1.076389e-01	ci right 1.201870e-01	k: 1138	n:10000
KS ci ratio: 5.505688e-02	ci left: 3.270391e-01	ci right 3.456564e-01	k: 3363	n:10000
LSM3   10000 perm   1 sec   (7595 perm/sec)   p_kst 3.363000e-01   p_cons 1.138000e-01   p_joint 3.363000e-01

Joint ci ratio: 7.828409e-02	ci left: 1.070221e-01	ci right 1.157912e-01	k: 2227	n:20000
Cons ci ratio: 7.828409e-02	ci left: 1.070221e-01	ci right 1.157912e-01	k: 2227	n:20000
KS ci ratio: 3.877898e-02	ci left: 3.315427e-01	ci right 3.447044e-01	k: 6762	n:20000
LSM3   20000 perm   3 sec   (6598 perm/sec)   p_kst 3.381000e-01   p_cons 1.113500e-01   p_joint 1.113500e-01

Outputting figure to mutsig2_images.part000000000099/LSM3.2_325_20000_0.3381_0.11135_0.11135.png
                gene_name: LSM3
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000099
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 99 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1547>
Subject: Job 9894005: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1547>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000100> was used as the working directory.
Started at Sat Oct  6 00:17:11 2012
Results reported at Sat Oct  6 00:38:08 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000100.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000100.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 100  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000100.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1354.06 sec.
    Max Memory :      3508 MB
    Max Swap   :      5887 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
100
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 100
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 100: processing genes 8926 - 9015
Calculating significance of each gene.
Using projection method.
8926	LSM6	1
8927	LSM7	1
8928	LSMD1	1
8929	LSP1	7.010949e-01
8930	LSR	9.769485e-01
8931	LSS	9.076273e-01
8932	LST-3TM12	5.242755e-01
8933	LST1	1.829245e-01
8934	LTA	1
8935	LTA4H	1
8936	LTB	6.641282e-01
8937	LTB4R	7.386911e-01
8938	LTB4R2	1
8939	LTBP1	3.654630e-01
8940	LTBP2	8.500866e-01
8941	LTBP3	8.854582e-01
8942	LTBP4	9.941382e-01
8943	LTBR	4.349698e-01
8944	LTC4S	1
8945	LTF	3.027889e-01
8946	LTK	6.412289e-01
8947	LTV1	4.043686e-01
8948	LUC7L	1
8949	LUC7L2	2.005012e-01
8950	LUC7L3	9.452797e-01
8951	LUM	3.165435e-03
8952	LUZP1	1.286819e-01
8953	LUZP2	2.630418e-04
8954	LUZP4	2.677843e-01
8955	LXN	1
8956	LY6D	2.324186e-01
8957	LY6E	1.357304e-01
8958	LY6G5B	1
8959	LY6G5C	3.114944e-01
8960	LY6G6C	3.840646e-01
8961	LY6G6D	1
8962	LY6G6F	7.659007e-01
8963	LY6H	1
8964	LY6K	4.351955e-01
8965	LY75	6.394153e-01
8966	LY86	1.776984e-01
8967	LY9	4.538866e-01
8968	LY96	6.864805e-02
8969	LYAR	3.177527e-01
8970	LYG1	4.384623e-02
8971	LYG2	5.660854e-01
8972	LYL1	1
8973	LYN	1.883947e-01
8974	LYNX1	1
8975	LYPD1	1
8976	LYPD2	5.155270e-01
8977	LYPD3	6.516234e-01
8978	LYPD4	2.072082e-01
8979	LYPD5	6.554712e-01
8980	LYPD6	6.233555e-01
8981	LYPD6B	5.680465e-01
8982	LYPLA1	1
8983	LYPLA2	1
8984	LYPLAL1	4.117575e-01
8985	LYRM1	1
8986	LYRM2	1.225099e-01
8987	LYRM4	1
8988	LYRM5	1.435809e-02
8989	LYRM7	1
8990	LYSMD1	2.445841e-01
8991	LYSMD2	1
8992	LYSMD3	7.794854e-01
8993	LYSMD4	8.161802e-01
8994	LYST	5.570820e-01
8995	LYVE1	7.237998e-01
8996	LYZ	1
8997	LYZL1	1
8998	LYZL2	4.513833e-01
8999	LYZL4	1
9000/18030 9000	LYZL6	2.729897e-01
9001	LZIC	6.979031e-02
In gene LZTFL1 the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 940     n = 1	mu =   7.59e-07
9002	LZTFL1	2.281701e-01
9003	LZTR1	7.423478e-01
9004	LZTS1	8.218665e-01
9005	LZTS2	2.516321e-01
9006	M6PR	2.695230e-01
9007	MAB21L1	3.034735e-01
9008	MAB21L2	2.095382e-01
9009	MACC1	3.990931e-04
9010	MACF1	7.011221e-01
9011	MACROD1	1.702410e-01
9012	MACROD2	4.467026e-02
9013	MAD1L1	7.951368e-01
9014	MAD2L1	5.381751e-01
9015	MAD2L1BP	1
Done

Running MutSig 2:
Scatter job 100: processing genes 8926 - 9015
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MACF1
Processing conservation and coverage...
43% 87% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.164346e-01	ci left: 9.584256e-02	ci right 1.077905e-01	k: 1017	n:10000
Cons ci ratio: 1.077657e-02	ci left: 9.246163e-01	ci right 9.347317e-01	k: 9298	n:10000
KS ci ratio: 1.708612e-01	ci left: 4.571402e-02	ci right 5.435051e-02	k: 499	n:10000
MACF1   10000 perm   8 sec   (1298 perm/sec)   p_kst 4.990000e-02   p_cons 9.298000e-01   p_joint 1.017000e-01

Joint ci ratio: 8.912054e-02	ci left: 8.425585e-02	ci right 9.216434e-02	k: 1763	n:20000
Cons ci ratio: 7.673509e-03	ci left: 9.251994e-01	ci right 9.323753e-01	k: 18577	n:20000
KS ci ratio: 1.201886e-01	ci left: 4.745718e-02	ci right 5.357434e-02	k: 1009	n:20000
MACF1   20000 perm   22 sec   (918 perm/sec)   p_kst 5.045000e-02   p_cons 9.288500e-01   p_joint 8.815000e-02

Joint ci ratio: 7.874493e-02	ci left: 7.328763e-02	ci right 7.932806e-02	k: 2288	n:30000
Cons ci ratio: 6.245111e-03	ci left: 9.263071e-01	ci right 9.321428e-01	k: 27878	n:30000
KS ci ratio: 9.861510e-02	ci left: 4.756077e-02	ci right 5.252683e-02	k: 1500	n:30000
MACF1   30000 perm   30 sec   (989 perm/sec)   p_kst 5.000000e-02   p_cons 9.292667e-01   p_joint 7.626667e-02

Outputting figure to mutsig2_images.part000000000100/MACF1.42_22842_30000_0.05_0.92927_0.076267.png
                gene_name: MACF1
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.079 

Current progress: 2 percent done.
LYST
Processing conservation and coverage...
86% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.552890e-01	ci left: 5.523135e-02	ci right 6.462705e-02	k: 598	n:10000
Cons ci ratio: 9.491770e-02	ci left: 1.387411e-01	ci right 1.526660e-01	k: 1456	n:10000
KS ci ratio: 1.113846e-01	ci left: 1.040292e-01	ci right 1.163989e-01	k: 1101	n:10000
LYST   10000 perm   4 sec   (2279 perm/sec)   p_kst 1.101000e-01   p_cons 1.456000e-01   p_joint 5.980000e-02

Joint ci ratio: 1.095653e-01	ci left: 5.684523e-02	ci right 6.348336e-02	k: 1202	n:20000
Cons ci ratio: 6.751176e-02	ci left: 1.393584e-01	ci right 1.491453e-01	k: 2884	n:20000
KS ci ratio: 7.734954e-02	ci left: 1.093810e-01	ci right 1.182316e-01	k: 2275	n:20000
LYST   20000 perm   10 sec   (2046 perm/sec)   p_kst 1.137500e-01   p_cons 1.442000e-01   p_joint 6.010000e-02

Joint ci ratio: 9.878843e-02	ci left: 4.739802e-02	ci right 5.235628e-02	k: 1495	n:30000
Cons ci ratio: 5.542686e-02	ci left: 1.389249e-01	ci right 1.468777e-01	k: 4286	n:30000
KS ci ratio: 6.312474e-02	ci left: 1.102930e-01	ci right 1.175153e-01	k: 3416	n:30000
LYST   30000 perm   16 sec   (1890 perm/sec)   p_kst 1.138667e-01   p_cons 1.428667e-01   p_joint 4.983333e-02

Outputting figure to mutsig2_images.part000000000100/LYST.24_11610_30000_0.11387_0.14287_0.049833.png
                gene_name: LYST
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.052 

Current progress: 5 percent done.
MACC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.646388e-02	ci left: 6.777071e-01	ci right 6.959839e-01	k: 6869	n:10000
Cons ci ratio: 3.196322e-02	ci left: 5.909224e-01	ci right 6.102190e-01	k: 6006	n:10000
KS ci ratio: 3.324445e-02	ci left: 5.718590e-01	ci right 5.912935e-01	k: 5816	n:10000
MACC1   10000 perm   2 sec   (4509 perm/sec)   p_kst 5.816000e-01   p_cons 6.006000e-01   p_joint 6.869000e-01

Outputting figure to mutsig2_images.part000000000100/MACC1.12_2575_10000_0.5816_0.6006_0.6869.png
                gene_name: MACC1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 7 percent done.
LTBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.576556e-02	ci left: 1.365853e-01	ci right 1.504231e-01	k: 1434	n:10000
Cons ci ratio: 1.820645e-01	ci left: 4.025478e-02	ci right 4.841334e-02	k: 442	n:10000
KS ci ratio: 4.051743e-02	ci left: 4.735616e-01	ci right 4.932481e-01	k: 4834	n:10000
LTBP1   10000 perm   3 sec   (3697 perm/sec)   p_kst 4.834000e-01   p_cons 4.420000e-02   p_joint 1.434000e-01

Joint ci ratio: 7.244374e-02	ci left: 1.230546e-01	ci right 1.323539e-01	k: 2553	n:20000
Cons ci ratio: 1.418062e-01	ci left: 3.418499e-02	ci right 3.945078e-02	k: 735	n:20000
KS ci ratio: 2.933800e-02	ci left: 4.646612e-01	ci right 4.785470e-01	k: 9432	n:20000
LTBP1   20000 perm   6 sec   (3368 perm/sec)   p_kst 4.716000e-01   p_cons 3.675000e-02   p_joint 1.276500e-01

Joint ci ratio: 6.291713e-02	ci left: 1.109505e-01	ci right 1.181910e-01	k: 3436	n:30000
Cons ci ratio: 1.172259e-01	ci left: 3.382317e-02	ci right 3.806732e-02	k: 1077	n:30000
KS ci ratio: 2.395983e-02	ci left: 4.658376e-01	ci right 4.771679e-01	k: 14145	n:30000
LTBP1   30000 perm   9 sec   (3249 perm/sec)   p_kst 4.715000e-01   p_cons 3.590000e-02   p_joint 1.145333e-01

Joint ci ratio: 5.390952e-02	ci left: 1.135938e-01	ci right 1.199120e-01	k: 4669	n:40000
Cons ci ratio: 1.021617e-01	ci left: 3.368355e-02	ci right 3.733429e-02	k: 1419	n:40000
KS ci ratio: 2.072929e-02	ci left: 4.670975e-01	ci right 4.769066e-01	k: 18880	n:40000
LTBP1   40000 perm   13 sec   (3156 perm/sec)   p_kst 4.720000e-01   p_cons 3.547500e-02   p_joint 1.167250e-01

Joint ci ratio: 4.499355e-02	ci left: 1.288266e-01	ci right 1.347762e-01	k: 6589	n:50000
Cons ci ratio: 9.129643e-02	ci left: 3.393422e-02	ci right 3.719999e-02	k: 1777	n:50000
KS ci ratio: 1.851126e-02	ci left: 4.684156e-01	ci right 4.771876e-01	k: 23640	n:50000
LTBP1   50000 perm   16 sec   (3096 perm/sec)   p_kst 4.728000e-01   p_cons 3.554000e-02   p_joint 1.317800e-01

Outputting figure to mutsig2_images.part000000000100/LTBP1.9_5357_50000_0.4728_0.03554_0.13178.png
                gene_name: LTBP1
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 10 percent done.
LTBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.716202e-02	ci left: 5.167575e-01	ci right 5.364270e-01	k: 5266	n:10000
Cons ci ratio: 1.175161e-02	ci left: 9.120382e-01	ci right 9.229172e-01	k: 9176	n:10000
KS ci ratio: 5.235785e-02	ci left: 3.496895e-01	ci right 3.685926e-01	k: 3591	n:10000
LTBP2   10000 perm   3 sec   (3823 perm/sec)   p_kst 3.591000e-01   p_cons 9.176000e-01   p_joint 5.266000e-01

Outputting figure to mutsig2_images.part000000000100/LTBP2.7_5610_10000_0.3591_0.9176_0.5266.png
                gene_name: LTBP2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 12 percent done.
LY75
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.388154e-02	ci left: 7.204755e-01	ci right 7.379908e-01	k: 7293	n:10000
KS ci ratio: 2.306618e-02	ci left: 7.341133e-01	ci right 7.513451e-01	k: 7428	n:10000
LY75   10000 perm   3 sec   (3694 perm/sec)   p_kst 7.428000e-01   p_cons 7.293000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000100/LY75.4_5309_10000_0.7428_0.7293_1.png
                gene_name: LY75
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
LUM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.361983e-02	ci left: 4.369227e-01	ci right 4.565083e-01	k: 4467	n:10000
Cons ci ratio: 2.957621e-02	ci left: 6.276875e-01	ci right 6.466326e-01	k: 6372	n:10000
KS ci ratio: 7.353110e-02	ci left: 2.130972e-01	ci right 2.294655e-01	k: 2212	n:10000
LUM   10000 perm   2 sec   (5445 perm/sec)   p_kst 2.212000e-01   p_cons 6.372000e-01   p_joint 4.467000e-01

Outputting figure to mutsig2_images.part000000000100/LUM.6_1025_10000_0.2212_0.6372_0.4467.png
                gene_name: LUM
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 17 percent done.
LUZP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.981388e-01	ci left: 7.692674e-03	ci right 1.160097e-02	k: 95	n:10000
Cons ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
KS ci ratio: 6.328272e-02	ci left: 2.684428e-01	ci right 2.860871e-01	k: 2772	n:10000
LUZP1   10000 perm   2 sec   (4683 perm/sec)   p_kst 2.772000e-01   p_cons 1.400000e-03   p_joint 9.500000e-03

Joint ci ratio: 1.752676e-01	ci left: 2.225822e-02	ci right 2.658156e-02	k: 487	n:20000
Cons ci ratio: 5.902971e-01	ci left: 1.556389e-03	ci right 2.894955e-03	k: 43	n:20000
KS ci ratio: 4.472000e-02	ci left: 2.713021e-01	ci right 2.837626e-01	k: 5550	n:20000
LUZP1   20000 perm   5 sec   (3982 perm/sec)   p_kst 2.775000e-01   p_cons 2.150000e-03   p_joint 2.435000e-02

Joint ci ratio: 3.378737e-01	ci left: 3.713216e-03	ci right 5.251843e-03	k: 133	n:30000
Cons ci ratio: 5.280792e-01	ci left: 1.352496e-03	ci right 2.347965e-03	k: 54	n:30000
KS ci ratio: 3.681816e-02	ci left: 2.691573e-01	ci right 2.792865e-01	k: 8226	n:30000
LUZP1   30000 perm   8 sec   (3888 perm/sec)   p_kst 2.742000e-01   p_cons 1.800000e-03   p_joint 4.433333e-03

Joint ci ratio: 2.086115e-01	ci left: 7.836928e-03	ci right 9.685449e-03	k: 349	n:40000
Cons ci ratio: 4.405932e-01	ci left: 1.541690e-03	ci right 2.433099e-03	k: 78	n:40000
KS ci ratio: 3.195640e-02	ci left: 2.689616e-01	ci right 2.777213e-01	k: 10933	n:40000
LUZP1   40000 perm   11 sec   (3653 perm/sec)   p_kst 2.733250e-01   p_cons 1.950000e-03   p_joint 8.725000e-03

Joint ci ratio: 1.243092e-01	ci left: 1.828656e-02	ci right 2.072967e-02	k: 974	n:50000
Cons ci ratio: 3.839838e-01	ci left: 1.681740e-03	ci right 2.497801e-03	k: 103	n:50000
KS ci ratio: 2.865409e-02	ci left: 2.684413e-01	ci right 2.762651e-01	k: 13617	n:50000
LUZP1   50000 perm   14 sec   (3569 perm/sec)   p_kst 2.723400e-01   p_cons 2.060000e-03   p_joint 1.948000e-02

Joint ci ratio: 1.970876e-01	ci left: 5.904322e-03	ci right 7.210763e-03	k: 392	n:60000
Cons ci ratio: 3.333058e-01	ci left: 1.917344e-03	ci right 2.698712e-03	k: 137	n:60000
KS ci ratio: 2.611642e-02	ci left: 2.694048e-01	ci right 2.765505e-01	k: 16378	n:60000
LUZP1   60000 perm   17 sec   (3522 perm/sec)   p_kst 2.729667e-01   p_cons 2.283333e-03   p_joint 6.533333e-03

Joint ci ratio: 2.081123e-01	ci left: 4.518038e-03	ci right 5.580770e-03	k: 352	n:70000
Cons ci ratio: 3.105207e-01	ci left: 1.919226e-03	ci right 2.637316e-03	k: 158	n:70000
KS ci ratio: 2.423216e-02	ci left: 2.688055e-01	ci right 2.754134e-01	k: 19047	n:70000
LUZP1   70000 perm   20 sec   (3476 perm/sec)   p_kst 2.721000e-01   p_cons 2.257143e-03   p_joint 5.028571e-03

Joint ci ratio: 1.357705e-01	ci left: 9.611915e-03	ci right 1.102394e-02	k: 824	n:80000
Cons ci ratio: 2.803730e-01	ci left: 2.096082e-03	ci right 2.790787e-03	k: 194	n:80000
KS ci ratio: 2.267008e-02	ci left: 2.689683e-01	ci right 2.751482e-01	k: 21764	n:80000
LUZP1   80000 perm   23 sec   (3436 perm/sec)   p_kst 2.720500e-01   p_cons 2.425000e-03   p_joint 1.030000e-02

Joint ci ratio: 1.357662e-01	ci left: 8.554337e-03	ci right 9.810937e-03	k: 825	n:90000
Cons ci ratio: 2.633623e-01	ci left: 2.132404e-03	ci right 2.789210e-03	k: 220	n:90000
KS ci ratio: 2.141960e-02	ci left: 2.682973e-01	ci right 2.741174e-01	k: 24408	n:90000
LUZP1   90000 perm   27 sec   (3393 perm/sec)   p_kst 2.712000e-01   p_cons 2.444444e-03   p_joint 9.166667e-03

Joint ci ratio: 1.450557e-01	ci left: 6.723872e-03	ci right 7.785009e-03	k: 724	n:100000
Cons ci ratio: 2.501314e-01	ci left: 2.143730e-03	ci right 2.765691e-03	k: 244	n:100000
KS ci ratio: 2.032870e-02	ci left: 2.682867e-01	ci right 2.738066e-01	k: 27104	n:100000
LUZP1   100000 perm   30 sec   (3352 perm/sec)   p_kst 2.710400e-01   p_cons 2.440000e-03   p_joint 7.240000e-03

Joint ci ratio: 1.084570e-01	ci left: 1.109943e-02	ci right 1.238105e-02	k: 1290	n:110000
Cons ci ratio: 2.387131e-01	ci left: 2.153671e-03	ci right 2.745776e-03	k: 268	n:110000
KS ci ratio: 1.921396e-02	ci left: 2.718733e-01	ci right 2.771568e-01	k: 30196	n:110000
LUZP1   110000 perm   33 sec   (3308 perm/sec)   p_kst 2.745091e-01   p_cons 2.436364e-03   p_joint 1.172727e-02

Joint ci ratio: 9.395027e-02	ci left: 1.362772e-02	ci right 1.497924e-02	k: 1715	n:120000
Cons ci ratio: 2.275632e-01	ci left: 2.186068e-03	ci right 2.755069e-03	k: 295	n:120000
KS ci ratio: 1.839566e-02	ci left: 2.719930e-01	ci right 2.770512e-01	k: 32942	n:120000
LUZP1   120000 perm   37 sec   (3268 perm/sec)   p_kst 2.745167e-01   p_cons 2.458333e-03   p_joint 1.429167e-02

Joint ci ratio: 9.527675e-02	ci left: 1.224105e-02	ci right 1.347313e-02	k: 1670	n:130000
Cons ci ratio: 2.195528e-01	ci left: 2.177664e-03	ci right 2.721833e-03	k: 317	n:130000
KS ci ratio: 1.769012e-02	ci left: 2.717301e-01	ci right 2.765876e-01	k: 35640	n:130000
LUZP1   130000 perm   41 sec   (3190 perm/sec)   p_kst 2.741538e-01   p_cons 2.438462e-03   p_joint 1.284615e-02

Joint ci ratio: 9.815418e-02	ci left: 1.071107e-02	ci right 1.182359e-02	k: 1576	n:140000
Cons ci ratio: 2.054790e-01	ci left: 2.326473e-03	ci right 2.865885e-03	k: 362	n:140000
KS ci ratio: 1.704987e-02	ci left: 2.717432e-01	ci right 2.764233e-01	k: 38371	n:140000
LUZP1   140000 perm   45 sec   (3143 perm/sec)   p_kst 2.740786e-01   p_cons 2.585714e-03   p_joint 1.125714e-02

Joint ci ratio: 9.626657e-02	ci left: 1.040671e-02	ci right 1.146565e-02	k: 1639	n:150000
Cons ci ratio: 2.003084e-01	ci left: 2.291603e-03	ci right 2.807925e-03	k: 381	n:150000
KS ci ratio: 1.647805e-02	ci left: 2.716708e-01	ci right 2.761912e-01	k: 41089	n:150000
LUZP1   150000 perm   48 sec   (3106 perm/sec)   p_kst 2.739267e-01   p_cons 2.540000e-03   p_joint 1.092667e-02

Joint ci ratio: 9.510589e-02	ci left: 1.000631e-02	ci right 1.101154e-02	k: 1680	n:160000
Cons ci ratio: 1.919432e-01	ci left: 2.350454e-03	ci right 2.855339e-03	k: 415	n:160000
KS ci ratio: 1.598276e-02	ci left: 2.710488e-01	ci right 2.754220e-01	k: 43717	n:160000
LUZP1   160000 perm   52 sec   (3068 perm/sec)   p_kst 2.732312e-01   p_cons 2.593750e-03   p_joint 1.050000e-02

Joint ci ratio: 9.618125e-02	ci left: 9.210823e-03	ci right 1.014719e-02	k: 1644	n:170000
Cons ci ratio: 1.849579e-01	ci left: 2.391553e-03	ci right 2.884475e-03	k: 447	n:170000
KS ci ratio: 1.553279e-02	ci left: 2.704196e-01	ci right 2.746587e-01	k: 46331	n:170000
LUZP1   170000 perm   56 sec   (3019 perm/sec)   p_kst 2.725353e-01   p_cons 2.629412e-03   p_joint 9.670588e-03

Joint ci ratio: 1.051941e-01	ci left: 7.252659e-03	ci right 8.063319e-03	k: 1377	n:180000
Cons ci ratio: 1.794347e-01	ci left: 2.407153e-03	ci right 2.886866e-03	k: 475	n:180000
KS ci ratio: 1.509736e-02	ci left: 2.704218e-01	ci right 2.745410e-01	k: 49046	n:180000
LUZP1   180000 perm   61 sec   (2953 perm/sec)   p_kst 2.724778e-01   p_cons 2.638889e-03   p_joint 7.650000e-03

Joint ci ratio: 1.056800e-01	ci left: 6.809365e-03	ci right 7.574207e-03	k: 1365	n:190000
Cons ci ratio: 1.752523e-01	ci left: 2.396139e-03	ci right 2.861348e-03	k: 498	n:190000
KS ci ratio: 1.467946e-02	ci left: 2.708874e-01	ci right 2.748985e-01	k: 51849	n:190000
LUZP1   190000 perm   66 sec   (2895 perm/sec)   p_kst 2.728895e-01   p_cons 2.621053e-03   p_joint 7.184211e-03

Joint ci ratio: 1.048143e-01	ci left: 6.580829e-03	ci right 7.313571e-03	k: 1388	n:200000
Cons ci ratio: 1.706948e-01	ci left: 2.405489e-03	ci right 2.859118e-03	k: 525	n:200000
KS ci ratio: 1.432165e-02	ci left: 2.705545e-01	ci right 2.744621e-01	k: 54501	n:200000
LUZP1   200000 perm   70 sec   (2849 perm/sec)   p_kst 2.725050e-01   p_cons 2.625000e-03   p_joint 6.940000e-03

Joint ci ratio: 1.021984e-01	ci left: 6.601441e-03	ci right 7.317032e-03	k: 1460	n:210000
Cons ci ratio: 1.666265e-01	ci left: 2.409526e-03	ci right 2.852000e-03	k: 551	n:210000
KS ci ratio: 1.397988e-02	ci left: 2.705062e-01	ci right 2.743192e-01	k: 57206	n:210000
LUZP1   210000 perm   75 sec   (2814 perm/sec)   p_kst 2.724095e-01   p_cons 2.623810e-03   p_joint 6.952381e-03

Joint ci ratio: 1.016212e-01	ci left: 6.376641e-03	ci right 7.063725e-03	k: 1477	n:220000
Cons ci ratio: 1.615794e-01	ci left: 2.452565e-03	ci right 2.887976e-03	k: 586	n:220000
KS ci ratio: 1.365723e-02	ci left: 2.705858e-01	ci right 2.743111e-01	k: 59938	n:220000
LUZP1   220000 perm   79 sec   (2784 perm/sec)   p_kst 2.724455e-01   p_cons 2.663636e-03   p_joint 6.713636e-03

Joint ci ratio: 1.004794e-01	ci left: 6.243464e-03	ci right 6.908193e-03	k: 1511	n:230000
Cons ci ratio: 1.585052e-01	ci left: 2.441926e-03	ci right 2.866415e-03	k: 609	n:230000
KS ci ratio: 1.334203e-02	ci left: 2.710716e-01	ci right 2.747168e-01	k: 62765	n:230000
LUZP1   230000 perm   83 sec   (2757 perm/sec)   p_kst 2.728913e-01   p_cons 2.647826e-03   p_joint 6.569565e-03

Joint ci ratio: 1.004933e-01	ci left: 5.983279e-03	ci right 6.620399e-03	k: 1511	n:240000
Cons ci ratio: 1.548659e-01	ci left: 2.456276e-03	ci right 2.872546e-03	k: 638	n:240000
KS ci ratio: 1.305330e-02	ci left: 2.713472e-01	ci right 2.749166e-01	k: 65551	n:240000
LUZP1   240000 perm   88 sec   (2730 perm/sec)   p_kst 2.731292e-01   p_cons 2.658333e-03   p_joint 6.295833e-03

Joint ci ratio: 9.818099e-02	ci left: 6.024799e-03	ci right 6.650728e-03	k: 1583	n:250000
Cons ci ratio: 1.516942e-01	ci left: 2.461883e-03	ci right 2.869783e-03	k: 665	n:250000
KS ci ratio: 1.278806e-02	ci left: 2.714300e-01	ci right 2.749273e-01	k: 68294	n:250000
LUZP1   250000 perm   93 sec   (2700 perm/sec)   p_kst 2.731760e-01   p_cons 2.660000e-03   p_joint 6.332000e-03

Joint ci ratio: 8.442837e-02	ci left: 7.875754e-03	ci right 8.573737e-03	k: 2137	n:260000
Cons ci ratio: 1.489252e-01	ci left: 2.459733e-03	ci right 2.859174e-03	k: 690	n:260000
KS ci ratio: 1.255673e-02	ci left: 2.709274e-01	ci right 2.743546e-01	k: 70886	n:260000
LUZP1   260000 perm   97 sec   (2672 perm/sec)   p_kst 2.726385e-01   p_cons 2.653846e-03   p_joint 8.219231e-03

Joint ci ratio: 8.484225e-02	ci left: 7.511493e-03	ci right 8.180617e-03	k: 2117	n:270000
Cons ci ratio: 1.466109e-01	ci left: 2.447099e-03	ci right 2.837773e-03	k: 712	n:270000
KS ci ratio: 1.231872e-02	ci left: 2.710651e-01	ci right 2.744286e-01	k: 73641	n:270000
LUZP1   270000 perm   102 sec   (2646 perm/sec)   p_kst 2.727444e-01   p_cons 2.637037e-03   p_joint 7.840741e-03

Joint ci ratio: 7.778267e-02	ci left: 8.639487e-03	ci right 9.342161e-03	k: 2516	n:280000
Cons ci ratio: 1.495919e-01	ci left: 2.263392e-03	ci right 2.632741e-03	k: 684	n:280000
KS ci ratio: 1.210071e-02	ci left: 2.709655e-01	ci right 2.742678e-01	k: 76332	n:280000
LUZP1   280000 perm   108 sec   (2601 perm/sec)   p_kst 2.726143e-01   p_cons 2.442857e-03   p_joint 8.985714e-03

Joint ci ratio: 7.707223e-02	ci left: 8.500481e-03	ci right 9.185250e-03	k: 2563	n:290000
Cons ci ratio: 1.478771e-01	ci left: 2.238461e-03	ci right 2.599184e-03	k: 700	n:290000
KS ci ratio: 1.189420e-02	ci left: 2.708628e-01	ci right 2.741072e-01	k: 79020	n:290000
LUZP1   290000 perm   113 sec   (2574 perm/sec)   p_kst 2.724828e-01   p_cons 2.413793e-03   p_joint 8.837931e-03

Joint ci ratio: 7.611649e-02	ci left: 8.429637e-03	ci right 9.099905e-03	k: 2628	n:300000
Cons ci ratio: 1.454089e-01	ci left: 2.240910e-03	ci right 2.595478e-03	k: 724	n:300000
KS ci ratio: 1.169073e-02	ci left: 2.710104e-01	ci right 2.742006e-01	k: 81781	n:300000
LUZP1   300000 perm   118 sec   (2539 perm/sec)   p_kst 2.726033e-01   p_cons 2.413333e-03   p_joint 8.760000e-03

Joint ci ratio: 8.067738e-02	ci left: 7.253024e-03	ci right 7.865914e-03	k: 2342	n:310000
Cons ci ratio: 1.436382e-01	ci left: 2.224587e-03	ci right 2.571917e-03	k: 742	n:310000
KS ci ratio: 1.149689e-02	ci left: 2.711650e-01	ci right 2.743038e-01	k: 84547	n:310000
LUZP1   310000 perm   123 sec   (2514 perm/sec)   p_kst 2.727323e-01   p_cons 2.393548e-03   p_joint 7.554839e-03

Joint ci ratio: 7.928435e-02	ci left: 7.280558e-03	ci right 7.884661e-03	k: 2425	n:320000
Cons ci ratio: 1.415582e-01	ci left: 2.221365e-03	ci right 2.562746e-03	k: 764	n:320000
KS ci ratio: 1.131737e-02	ci left: 2.711356e-01	ci right 2.742247e-01	k: 87257	n:320000
LUZP1   320000 perm   129 sec   (2490 perm/sec)   p_kst 2.726781e-01   p_cons 2.387500e-03   p_joint 7.578125e-03

Joint ci ratio: 7.799240e-02	ci left: 7.300565e-03	ci right 7.896009e-03	k: 2506	n:330000
Cons ci ratio: 1.398334e-01	ci left: 2.209599e-03	ci right 2.544690e-03	k: 783	n:330000
KS ci ratio: 1.114218e-02	ci left: 2.712445e-01	ci right 2.742867e-01	k: 90012	n:330000
LUZP1   330000 perm   134 sec   (2466 perm/sec)   p_kst 2.727636e-01   p_cons 2.372727e-03   p_joint 7.593939e-03

Joint ci ratio: 7.761228e-02	ci left: 7.157921e-03	ci right 7.738757e-03	k: 2531	n:340000
Cons ci ratio: 1.380840e-01	ci left: 2.201389e-03	ci right 2.530714e-03	k: 803	n:340000
KS ci ratio: 1.097626e-02	ci left: 2.712975e-01	ci right 2.742946e-01	k: 92750	n:340000
LUZP1   340000 perm   139 sec   (2442 perm/sec)   p_kst 2.727941e-01   p_cons 2.361765e-03   p_joint 7.444118e-03

Joint ci ratio: 7.822977e-02	ci left: 6.844109e-03	ci right 7.404098e-03	k: 2492	n:350000
Cons ci ratio: 1.363157e-01	ci left: 2.196432e-03	ci right 2.520467e-03	k: 824	n:350000
KS ci ratio: 1.081614e-02	ci left: 2.713990e-01	ci right 2.743533e-01	k: 95506	n:350000
LUZP1   350000 perm   145 sec   (2417 perm/sec)   p_kst 2.728743e-01   p_cons 2.354286e-03   p_joint 7.120000e-03

Joint ci ratio: 7.752061e-02	ci left: 6.779275e-03	ci right 7.328705e-03	k: 2538	n:360000
Cons ci ratio: 1.336668e-01	ci left: 2.223993e-03	ci right 2.545212e-03	k: 857	n:360000
KS ci ratio: 1.066238e-02	ci left: 2.715119e-01	ci right 2.744251e-01	k: 98268	n:360000
LUZP1   360000 perm   150 sec   (2395 perm/sec)   p_kst 2.729667e-01   p_cons 2.380556e-03   p_joint 7.050000e-03

Joint ci ratio: 7.632648e-02	ci left: 6.808112e-03	ci right 7.351002e-03	k: 2618	n:370000
Cons ci ratio: 1.308724e-01	ci left: 2.260579e-03	ci right 2.579726e-03	k: 894	n:370000
KS ci ratio: 1.052007e-02	ci left: 2.714273e-01	ci right 2.743005e-01	k: 100959	n:370000
LUZP1   370000 perm   156 sec   (2373 perm/sec)   p_kst 2.728622e-01   p_cons 2.416216e-03   p_joint 7.075676e-03

Joint ci ratio: 7.565308e-02	ci left: 6.750278e-03	ci right 7.283597e-03	k: 2665	n:380000
Cons ci ratio: 1.297195e-01	ci left: 2.241822e-03	ci right 2.555317e-03	k: 910	n:380000
KS ci ratio: 1.038601e-02	ci left: 2.712450e-01	ci right 2.740795e-01	k: 103611	n:380000
LUZP1   380000 perm   162 sec   (2352 perm/sec)   p_kst 2.726605e-01   p_cons 2.394737e-03   p_joint 7.013158e-03

Joint ci ratio: 7.862441e-02	ci left: 6.084238e-03	ci right 6.584678e-03	k: 2469	n:390000
Cons ci ratio: 1.281813e-01	ci left: 2.238929e-03	ci right 2.548025e-03	k: 932	n:390000
KS ci ratio: 1.025694e-02	ci left: 2.710723e-01	ci right 2.738695e-01	k: 106263	n:390000
LUZP1   390000 perm   167 sec   (2331 perm/sec)   p_kst 2.724692e-01   p_cons 2.389744e-03   p_joint 6.330769e-03

Joint ci ratio: 7.771776e-02	ci left: 6.074296e-03	ci right 6.567897e-03	k: 2527	n:400000
Cons ci ratio: 1.265638e-01	ci left: 2.241044e-03	ci right 2.546235e-03	k: 956	n:400000
KS ci ratio: 1.012873e-02	ci left: 2.710582e-01	ci right 2.738201e-01	k: 108975	n:400000
LUZP1   400000 perm   173 sec   (2310 perm/sec)   p_kst 2.724375e-01   p_cons 2.390000e-03   p_joint 6.317500e-03

Joint ci ratio: 8.066578e-02	ci left: 5.495743e-03	ci right 5.960065e-03	k: 2347	n:410000
Cons ci ratio: 1.248785e-01	ci left: 2.247806e-03	ci right 2.549539e-03	k: 982	n:410000
KS ci ratio: 1.000533e-02	ci left: 2.710401e-01	ci right 2.737680e-01	k: 111685	n:410000
LUZP1   410000 perm   180 sec   (2284 perm/sec)   p_kst 2.724024e-01   p_cons 2.395122e-03   p_joint 5.724390e-03

Joint ci ratio: 7.973752e-02	ci left: 5.493217e-03	ci right 5.951737e-03	k: 2402	n:420000
Cons ci ratio: 1.233200e-01	ci left: 2.251963e-03	ci right 2.550206e-03	k: 1007	n:420000
KS ci ratio: 9.887109e-03	ci left: 2.709922e-01	ci right 2.736872e-01	k: 114382	n:420000
LUZP1   420000 perm   186 sec   (2262 perm/sec)   p_kst 2.723381e-01   p_cons 2.397619e-03   p_joint 5.719048e-03

Joint ci ratio: 7.985991e-02	ci left: 5.349498e-03	ci right 5.796739e-03	k: 2395	n:430000
Cons ci ratio: 1.222343e-01	ci left: 2.240165e-03	ci right 2.534046e-03	k: 1025	n:430000
KS ci ratio: 9.768852e-03	ci left: 2.711138e-01	ci right 2.737776e-01	k: 117151	n:430000
LUZP1   430000 perm   192 sec   (2241 perm/sec)   p_kst 2.724442e-01   p_cons 2.383721e-03   p_joint 5.569767e-03

Joint ci ratio: 8.125771e-02	ci left: 5.047504e-03	ci right 5.477232e-03	k: 2314	n:440000
Cons ci ratio: 1.204275e-01	ci left: 2.257570e-03	ci right 2.549044e-03	k: 1056	n:440000
KS ci ratio: 9.654574e-03	ci left: 2.712370e-01	ci right 2.738706e-01	k: 119923	n:440000
LUZP1   440000 perm   198 sec   (2218 perm/sec)   p_kst 2.725523e-01   p_cons 2.400000e-03   p_joint 5.259091e-03

Joint ci ratio: 8.122723e-02	ci left: 4.939680e-03	ci right 5.360063e-03	k: 2316	n:450000
Cons ci ratio: 1.191938e-01	ci left: 2.254825e-03	ci right 2.542753e-03	k: 1078	n:450000
KS ci ratio: 9.547316e-03	ci left: 2.712261e-01	ci right 2.738302e-01	k: 122637	n:450000
LUZP1   450000 perm   205 sec   (2190 perm/sec)   p_kst 2.725267e-01   p_cons 2.395556e-03   p_joint 5.146667e-03

Joint ci ratio: 8.048458e-02	ci left: 4.923883e-03	ci right 5.338910e-03	k: 2359	n:460000
Cons ci ratio: 1.179972e-01	ci left: 2.252214e-03	ci right 2.536720e-03	k: 1100	n:460000
KS ci ratio: 9.442934e-03	ci left: 2.712419e-01	ci right 2.738175e-01	k: 125363	n:460000
LUZP1   460000 perm   212 sec   (2171 perm/sec)   p_kst 2.725283e-01   p_cons 2.391304e-03   p_joint 5.128261e-03

Joint ci ratio: 8.054046e-02	ci left: 4.812854e-03	ci right 5.218817e-03	k: 2356	n:470000
Cons ci ratio: 1.167317e-01	ci left: 2.253860e-03	ci right 2.535309e-03	k: 1124	n:470000
KS ci ratio: 9.339847e-03	ci left: 2.713443e-01	ci right 2.738926e-01	k: 128130	n:470000
LUZP1   470000 perm   219 sec   (2150 perm/sec)   p_kst 2.726170e-01   p_cons 2.391489e-03   p_joint 5.012766e-03

Joint ci ratio: 8.018650e-02	ci left: 4.755451e-03	ci right 5.154727e-03	k: 2377	n:480000
Cons ci ratio: 1.159623e-01	ci left: 2.237244e-03	ci right 2.514651e-03	k: 1139	n:480000
KS ci ratio: 9.242540e-03	ci left: 2.713364e-01	ci right 2.738580e-01	k: 130846	n:480000
LUZP1   480000 perm   226 sec   (2123 perm/sec)   p_kst 2.725958e-01   p_cons 2.372917e-03   p_joint 4.952083e-03

Joint ci ratio: 7.972031e-02	ci left: 4.714397e-03	ci right 5.107818e-03	k: 2405	n:490000
Cons ci ratio: 1.149587e-01	ci left: 2.231223e-03	ci right 2.505326e-03	k: 1159	n:490000
KS ci ratio: 9.150896e-03	ci left: 2.712129e-01	ci right 2.737082e-01	k: 133505	n:490000
LUZP1   490000 perm   233 sec   (2099 perm/sec)   p_kst 2.724592e-01   p_cons 2.365306e-03   p_joint 4.908163e-03

Joint ci ratio: 7.887231e-02	ci left: 4.722048e-03	ci right 5.111723e-03	k: 2457	n:500000
Cons ci ratio: 1.139324e-01	ci left: 2.227396e-03	ci right 2.498422e-03	k: 1180	n:500000
KS ci ratio: 9.061605e-03	ci left: 2.711084e-01	ci right 2.735782e-01	k: 136171	n:500000
LUZP1   500000 perm   241 sec   (2076 perm/sec)   p_kst 2.723420e-01   p_cons 2.360000e-03   p_joint 4.914000e-03

Joint ci ratio: 7.202536e-02	ci left: 5.566463e-03	ci right 5.984279e-03	k: 2944	n:510000
Cons ci ratio: 1.124651e-01	ci left: 2.242786e-03	ci right 2.511937e-03	k: 1211	n:510000
KS ci ratio: 8.971946e-03	ci left: 2.711374e-01	ci right 2.735829e-01	k: 138903	n:510000
LUZP1   510000 perm   249 sec   (2052 perm/sec)   p_kst 2.723588e-01   p_cons 2.374510e-03   p_joint 5.772549e-03

Joint ci ratio: 6.424965e-02	ci left: 6.879258e-03	ci right 7.337797e-03	k: 3695	n:520000
Cons ci ratio: 1.115035e-01	ci left: 2.238908e-03	ci right 2.505146e-03	k: 1232	n:520000
KS ci ratio: 8.884681e-03	ci left: 2.711749e-01	ci right 2.735969e-01	k: 141640	n:520000
LUZP1   520000 perm   258 sec   (2019 perm/sec)   p_kst 2.723846e-01   p_cons 2.369231e-03   p_joint 7.105769e-03

Joint ci ratio: 6.370946e-02	ci left: 6.866426e-03	ci right 7.320119e-03	k: 3758	n:530000
Cons ci ratio: 1.104780e-01	ci left: 2.238856e-03	ci right 2.502480e-03	k: 1255	n:530000
KS ci ratio: 8.801548e-03	ci left: 2.711377e-01	ci right 2.735365e-01	k: 144338	n:530000
LUZP1   530000 perm   265 sec   (2001 perm/sec)   p_kst 2.723358e-01   p_cons 2.367925e-03   p_joint 7.090566e-03

Joint ci ratio: 6.424942e-02	ci left: 6.626266e-03	ci right 7.067939e-03	k: 3696	n:540000
Cons ci ratio: 1.098250e-01	ci left: 2.224408e-03	ci right 2.484681e-03	k: 1270	n:540000
KS ci ratio: 8.722132e-03	ci left: 2.710372e-01	ci right 2.734134e-01	k: 147001	n:540000
LUZP1   540000 perm   272 sec   (1986 perm/sec)   p_kst 2.722241e-01   p_cons 2.351852e-03   p_joint 6.844444e-03

Joint ci ratio: 6.872822e-02	ci left: 5.677853e-03	ci right 6.083743e-03	k: 3233	n:550000
Cons ci ratio: 1.087604e-01	ci left: 2.228176e-03	ci right 2.486202e-03	k: 1295	n:550000
KS ci ratio: 8.641772e-03	ci left: 2.710803e-01	ci right 2.734348e-01	k: 149741	n:550000
LUZP1   550000 perm   279 sec   (1971 perm/sec)   p_kst 2.722564e-01   p_cons 2.354545e-03   p_joint 5.878182e-03

Joint ci ratio: 6.868913e-02	ci left: 5.583473e-03	ci right 5.982380e-03	k: 3237	n:560000
Cons ci ratio: 1.076038e-01	ci left: 2.237035e-03	ci right 2.493157e-03	k: 1323	n:560000
KS ci ratio: 8.560701e-03	ci left: 2.712557e-01	ci right 2.735895e-01	k: 152556	n:560000
LUZP1   560000 perm   286 sec   (1956 perm/sec)   p_kst 2.724214e-01   p_cons 2.362500e-03   p_joint 5.780357e-03

Joint ci ratio: 5.935215e-02	ci left: 7.369258e-03	ci right 7.821733e-03	k: 4328	n:570000
Cons ci ratio: 1.066416e-01	ci left: 2.238766e-03	ci right 2.492650e-03	k: 1347	n:570000
KS ci ratio: 8.487950e-03	ci left: 2.711412e-01	ci right 2.734541e-01	k: 155209	n:570000
LUZP1   570000 perm   295 sec   (1935 perm/sec)   p_kst 2.722965e-01   p_cons 2.363158e-03   p_joint 7.592982e-03

Joint ci ratio: 5.885138e-02	ci left: 7.367903e-03	ci right 7.816347e-03	k: 4402	n:580000
Cons ci ratio: 1.055891e-01	ci left: 2.245483e-03	ci right 2.497460e-03	k: 1374	n:580000
KS ci ratio: 8.412191e-03	ci left: 2.712580e-01	ci right 2.735512e-01	k: 157994	n:580000
LUZP1   580000 perm   302 sec   (1921 perm/sec)   p_kst 2.724034e-01   p_cons 2.368966e-03   p_joint 7.589655e-03

Joint ci ratio: 6.067259e-02	ci left: 6.812209e-03	ci right 7.240111e-03	k: 4144	n:590000
Cons ci ratio: 1.049429e-01	ci left: 2.235478e-03	ci right 2.484703e-03	k: 1391	n:590000
KS ci ratio: 8.339956e-03	ci left: 2.712981e-01	ci right 2.735719e-01	k: 160736	n:590000
LUZP1   590000 perm   310 sec   (1905 perm/sec)   p_kst 2.724339e-01   p_cons 2.357627e-03   p_joint 7.023729e-03

Joint ci ratio: 5.763206e-02	ci left: 7.431083e-03	ci right 7.873690e-03	k: 4590	n:600000
Cons ci ratio: 1.040497e-01	ci left: 2.237175e-03	ci right 2.484336e-03	k: 1415	n:600000
KS ci ratio: 8.271916e-03	ci left: 2.712239e-01	ci right 2.734783e-01	k: 163410	n:600000
LUZP1   600000 perm   318 sec   (1890 perm/sec)   p_kst 2.723500e-01   p_cons 2.358333e-03   p_joint 7.650000e-03

Joint ci ratio: 5.717325e-02	ci left: 7.428832e-03	ci right 7.867666e-03	k: 4664	n:610000
Cons ci ratio: 1.031790e-01	ci left: 2.238825e-03	ci right 2.483972e-03	k: 1439	n:610000
KS ci ratio: 8.206430e-03	ci left: 2.711079e-01	ci right 2.733435e-01	k: 166057	n:610000
LUZP1   610000 perm   325 sec   (1875 perm/sec)   p_kst 2.722246e-01   p_cons 2.359016e-03   p_joint 7.645902e-03

Joint ci ratio: 5.672522e-02	ci left: 7.426667e-03	ci right 7.861823e-03	k: 4738	n:620000
Cons ci ratio: 1.022248e-01	ci left: 2.245145e-03	ci right 2.488574e-03	k: 1466	n:620000
KS ci ratio: 8.137438e-03	ci left: 2.712406e-01	ci right 2.734583e-01	k: 168856	n:620000
LUZP1   620000 perm   334 sec   (1858 perm/sec)   p_kst 2.723484e-01   p_cons 2.364516e-03   p_joint 7.641935e-03

Joint ci ratio: 5.634068e-02	ci left: 7.410498e-03	ci right 7.841667e-03	k: 4803	n:630000
Cons ci ratio: 1.016038e-01	ci left: 2.237350e-03	ci right 2.478373e-03	k: 1484	n:630000
KS ci ratio: 8.073648e-03	ci left: 2.711979e-01	ci right 2.733979e-01	k: 171547	n:630000
LUZP1   630000 perm   342 sec   (1844 perm/sec)   p_kst 2.722968e-01   p_cons 2.355556e-03   p_joint 7.623810e-03

Joint ci ratio: 5.598702e-02	ci left: 7.388681e-03	ci right 7.815794e-03	k: 4864	n:640000
Cons ci ratio: 1.006589e-01	ci left: 2.245036e-03	ci right 2.484504e-03	k: 1512	n:640000
KS ci ratio: 8.009724e-03	ci left: 2.712362e-01	ci right 2.734190e-01	k: 174289	n:640000
LUZP1   640000 perm   350 sec   (1831 perm/sec)   p_kst 2.723266e-01   p_cons 2.362500e-03   p_joint 7.600000e-03

Joint ci ratio: 5.571406e-02	ci left: 7.347819e-03	ci right 7.770433e-03	k: 4912	n:650000
Cons ci ratio: 9.993512e-02	ci left: 2.243494e-03	ci right 2.480976e-03	k: 1534	n:650000
KS ci ratio: 7.945413e-03	ci left: 2.713671e-01	ci right 2.735334e-01	k: 177092	n:650000
LUZP1   650000 perm   358 sec   (1817 perm/sec)   p_kst 2.724492e-01   p_cons 2.360000e-03   p_joint 7.556923e-03

Outputting figure to mutsig2_images.part000000000100/LUZP1.6_3239_650000_0.27245_0.00236_0.0075569.png
                gene_name: LUZP1
               theta_stop: 0.100 
                    nperm: 650000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.0024 
      ci_cons_bounds_left: 0.0022 
     ci_cons_bounds_right: 0.0025 
                  p_joint: 0.0076 
     ci_joint_bounds_left: 0.0073 
    ci_joint_bounds_right: 0.0078 

Current progress: 20 percent done.
LUZP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.424392e-01	ci left: 6.536500e-02	ci right 7.548697e-02	k: 703	n:10000
Cons ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
KS ci ratio: 1.012706e-01	ci left: 1.236626e-01	ci right 1.369535e-01	k: 1302	n:10000
LUZP2   10000 perm   2 sec   (4328 perm/sec)   p_kst 1.302000e-01   p_cons 7.170000e-02   p_joint 7.030000e-02

Joint ci ratio: 8.283239e-02	ci left: 9.651357e-02	ci right 1.049029e-01	k: 2013	n:20000
Cons ci ratio: 9.599980e-02	ci left: 7.324420e-02	ci right 8.067935e-02	k: 1538	n:20000
KS ci ratio: 7.139006e-02	ci left: 1.263036e-01	ci right 1.357040e-01	k: 2619	n:20000
LUZP2   20000 perm   5 sec   (4092 perm/sec)   p_kst 1.309500e-01   p_cons 7.690000e-02   p_joint 1.006500e-01

Outputting figure to mutsig2_images.part000000000100/LUZP2.6_1089_20000_0.13095_0.0769_0.10065.png
                gene_name: LUZP2
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 22 percent done.
MACROD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.318138e-02	ci left: 4.419113e-01	ci right 4.615169e-01	k: 4517	n:10000
Cons ci ratio: 7.317031e-02	ci left: 2.147744e-01	ci right 2.311873e-01	k: 2229	n:10000
KS ci ratio: 4.093336e-02	ci left: 4.684669e-01	ci right 4.881457e-01	k: 4783	n:10000
MACROD2   10000 perm   2 sec   (4357 perm/sec)   p_kst 4.783000e-01   p_cons 2.229000e-01   p_joint 4.517000e-01

Outputting figure to mutsig2_images.part000000000100/MACROD2.6_1419_10000_0.4783_0.2229_0.4517.png
                gene_name: MACROD2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 24 percent done.
LZTR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.262681e-02	ci left: 5.809875e-01	ci right 6.003596e-01	k: 5907	n:10000
Cons ci ratio: 7.270890e-02	ci left: 2.169452e-01	ci right 2.334152e-01	k: 2251	n:10000
KS ci ratio: 4.448599e-02	ci left: 4.272478e-01	ci right 4.467889e-01	k: 4370	n:10000
LZTR1   10000 perm   2 sec   (5251 perm/sec)   p_kst 4.370000e-01   p_cons 2.251000e-01   p_joint 5.907000e-01

Outputting figure to mutsig2_images.part000000000100/LZTR1.5_2607_10000_0.437_0.2251_0.5907.png
                gene_name: LZTR1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 27 percent done.
LTF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.913932e-02	ci left: 3.792292e-01	ci right 3.984357e-01	k: 3888	n:10000
Cons ci ratio: 3.358024e-02	ci left: 5.669450e-01	ci right 5.864103e-01	k: 5767	n:10000
KS ci ratio: 6.732082e-02	ci left: 2.446012e-01	ci right 2.617428e-01	k: 2531	n:10000
LTF   10000 perm   2 sec   (5060 perm/sec)   p_kst 2.531000e-01   p_cons 5.767000e-01   p_joint 3.888000e-01

Outputting figure to mutsig2_images.part000000000100/LTF.4_2201_10000_0.2531_0.5767_0.3888.png
                gene_name: LTF
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 29 percent done.
LYN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.511073e-02	ci left: 5.449944e-01	ci right 5.645736e-01	k: 5548	n:10000
Cons ci ratio: 4.823153e-02	ci left: 3.880884e-01	ci right 4.073712e-01	k: 3977	n:10000
KS ci ratio: 4.255064e-02	ci left: 4.491963e-01	ci right 4.688276e-01	k: 4590	n:10000
LYN   10000 perm   2 sec   (5746 perm/sec)   p_kst 4.590000e-01   p_cons 3.977000e-01   p_joint 5.548000e-01

Outputting figure to mutsig2_images.part000000000100/LYN.4_1587_10000_0.459_0.3977_0.5548.png
                gene_name: LYN
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 32 percent done.
MAB21L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.322340e-01	ci left: 2.447729e-02	ci right 3.100172e-02	k: 276	n:10000
Cons ci ratio: 1.491591e-01	ci left: 5.976289e-02	ci right 6.949263e-02	k: 645	n:10000
KS ci ratio: 1.374621e-01	ci left: 7.000876e-02	ci right 8.044030e-02	k: 751	n:10000
MAB21L2   10000 perm   2 sec   (5672 perm/sec)   p_kst 7.510000e-02   p_cons 6.450000e-02   p_joint 2.760000e-02

Joint ci ratio: 1.850223e-01	ci left: 1.991636e-02	ci right 2.402425e-02	k: 438	n:20000
Cons ci ratio: 1.008760e-01	ci left: 6.664808e-02	ci right 7.377748e-02	k: 1403	n:20000
KS ci ratio: 9.734244e-02	ci left: 7.133775e-02	ci right 7.868638e-02	k: 1499	n:20000
MAB21L2   20000 perm   4 sec   (5162 perm/sec)   p_kst 7.495000e-02   p_cons 7.015000e-02   p_joint 2.190000e-02

Joint ci ratio: 1.539028e-01	ci left: 1.953562e-02	ci right 2.282469e-02	k: 634	n:30000
Cons ci ratio: 8.283178e-02	ci left: 6.658209e-02	ci right 7.236829e-02	k: 2083	n:30000
KS ci ratio: 8.082808e-02	ci left: 6.975402e-02	ci right 7.566239e-02	k: 2180	n:30000
MAB21L2   30000 perm   6 sec   (4946 perm/sec)   p_kst 7.266667e-02   p_cons 6.943333e-02   p_joint 2.113333e-02

Joint ci ratio: 1.040373e-01	ci left: 3.248908e-02	ci right 3.607895e-02	k: 1370	n:40000
Cons ci ratio: 7.107263e-02	ci left: 6.815763e-02	ci right 7.320491e-02	k: 2826	n:40000
KS ci ratio: 6.958739e-02	ci left: 7.093661e-02	ci right 7.607551e-02	k: 2939	n:40000
MAB21L2   40000 perm   8 sec   (4806 perm/sec)   p_kst 7.347500e-02   p_cons 7.065000e-02   p_joint 3.425000e-02

Joint ci ratio: 7.716438e-02	ci left: 4.718299e-02	ci right 5.098958e-02	k: 2453	n:50000
Cons ci ratio: 6.309755e-02	ci left: 6.939444e-02	ci right 7.393544e-02	k: 3582	n:50000
KS ci ratio: 6.219533e-02	ci left: 7.130632e-02	ci right 7.590333e-02	k: 3679	n:50000
MAB21L2   50000 perm   11 sec   (4671 perm/sec)   p_kst 7.358000e-02   p_cons 7.164000e-02   p_joint 4.906000e-02

Outputting figure to mutsig2_images.part000000000100/MAB21L2.4_1084_50000_0.07358_0.07164_0.04906.png
                gene_name: MAB21L2
               theta_stop: 0.077 
                    nperm: 50000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.051 

Current progress: 34 percent done.
LST-3TM12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.106031e-03	ci left: 9.732324e-01	ci right 9.792858e-01	k: 9764	n:10000
KS ci ratio: 3.314211e-02	ci left: 5.733634e-01	ci right 5.927881e-01	k: 5831	n:10000
LST-3TM12   10000 perm   2 sec   (5644 perm/sec)   p_kst 5.831000e-01   p_cons 9.764000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000100/LST-3TM12.3_1975_10000_0.5831_0.9764_1.png
                gene_name: LST-3TM12
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
LTBP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.449635e-02	ci left: 1.695643e-01	ci right 1.846243e-01	k: 1770	n:10000
Cons ci ratio: 2.058238e-01	ci left: 3.138896e-02	ci right 3.868516e-02	k: 349	n:10000
KS ci ratio: 4.703470e-02	ci left: 4.001384e-01	ci right 4.195142e-01	k: 4098	n:10000
LTBP4   10000 perm   3 sec   (3920 perm/sec)   p_kst 4.098000e-01   p_cons 3.490000e-02   p_joint 1.770000e-01

Joint ci ratio: 7.888301e-02	ci left: 1.055482e-01	ci right 1.142656e-01	k: 2197	n:20000
Cons ci ratio: 1.433295e-01	ci left: 3.346084e-02	ci right 3.867516e-02	k: 720	n:20000
KS ci ratio: 3.335121e-02	ci left: 4.016762e-01	ci right 4.153504e-01	k: 8170	n:20000
LTBP4   20000 perm   6 sec   (3528 perm/sec)   p_kst 4.085000e-01   p_cons 3.600000e-02   p_joint 1.098500e-01

Joint ci ratio: 7.470326e-02	ci left: 8.091761e-02	ci right 8.722988e-02	k: 2521	n:30000
Cons ci ratio: 1.181383e-01	ci left: 3.330500e-02	ci right 3.751892e-02	k: 1061	n:30000
KS ci ratio: 2.724891e-02	ci left: 4.026307e-01	ci right 4.137871e-01	k: 12246	n:30000
LTBP4   30000 perm   9 sec   (3374 perm/sec)   p_kst 4.082000e-01   p_cons 3.536667e-02   p_joint 8.403333e-02

Joint ci ratio: 6.456595e-02	ci left: 8.164425e-02	ci right 8.711626e-02	k: 3374	n:40000
Cons ci ratio: 1.065580e-01	ci left: 3.097859e-02	ci right 3.448967e-02	k: 1308	n:40000
KS ci ratio: 2.379016e-02	ci left: 3.994853e-01	ci right 4.091286e-01	k: 16172	n:40000
LTBP4   40000 perm   12 sec   (3284 perm/sec)   p_kst 4.043000e-01   p_cons 3.270000e-02   p_joint 8.435000e-02

Joint ci ratio: 6.219533e-02	ci left: 7.130632e-02	ci right 7.590333e-02	k: 3679	n:50000
Cons ci ratio: 9.413290e-02	ci left: 3.193993e-02	ci right 3.511453e-02	k: 1675	n:50000
KS ci ratio: 2.125935e-02	ci left: 4.004333e-01	ci right 4.090578e-01	k: 20237	n:50000
LTBP4   50000 perm   16 sec   (3207 perm/sec)   p_kst 4.047400e-01   p_cons 3.350000e-02   p_joint 7.358000e-02

Outputting figure to mutsig2_images.part000000000100/LTBP4.3_5299_50000_0.40474_0.0335_0.07358.png
                gene_name: LTBP4
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.076 

Current progress: 39 percent done.
LTBR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.789100e-02	ci left: 3.914738e-01	ci right 4.107839e-01	k: 4011	n:10000
Cons ci ratio: 2.176266e-02	ci left: 7.559561e-01	ci right 7.726896e-01	k: 7644	n:10000
KS ci ratio: 7.677004e-02	ci left: 1.987996e-01	ci right 2.147715e-01	k: 2067	n:10000
LTBR   10000 perm   2 sec   (5491 perm/sec)   p_kst 2.067000e-01   p_cons 7.644000e-01   p_joint 4.011000e-01

Outputting figure to mutsig2_images.part000000000100/LTBR.3_1348_10000_0.2067_0.7644_0.4011.png
                gene_name: LTBR
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 41 percent done.
LTK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.776603e-02	ci left: 3.060990e-01	ci right 3.244087e-01	k: 3152	n:10000
Cons ci ratio: 2.705609e-02	ci left: 6.680363e-01	ci right 6.864603e-01	k: 6773	n:10000
KS ci ratio: 8.075213e-02	ci left: 1.829427e-01	ci right 1.984379e-01	k: 1906	n:10000
LTK   10000 perm   2 sec   (5180 perm/sec)   p_kst 1.906000e-01   p_cons 6.773000e-01   p_joint 3.152000e-01

Outputting figure to mutsig2_images.part000000000100/LTK.3_2675_10000_0.1906_0.6773_0.3152.png
                gene_name: LTK
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 44 percent done.
LUC7L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.648024e-02	ci left: 3.158221e-01	ci right 3.342799e-01	k: 3250	n:10000
Cons ci ratio: 1.732587e-02	ci left: 8.292056e-01	ci right 8.437978e-01	k: 8366	n:10000
KS ci ratio: 9.045589e-02	ci left: 1.509016e-01	ci right 1.652982e-01	k: 1580	n:10000
LUC7L2   10000 perm   2 sec   (6198 perm/sec)   p_kst 1.580000e-01   p_cons 8.366000e-01   p_joint 3.250000e-01

Outputting figure to mutsig2_images.part000000000100/LUC7L2.3_1219_10000_0.158_0.8366_0.325.png
                gene_name: LUC7L2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 46 percent done.
LY9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.368812e-02	ci left: 7.237072e-01	ci right 7.411572e-01	k: 7325	n:10000
Cons ci ratio: 5.753719e-03	ci left: 9.759962e-01	ci right 9.817201e-01	k: 9790	n:10000
KS ci ratio: 4.201491e-02	ci left: 4.554851e-01	ci right 4.751351e-01	k: 4653	n:10000
LY9   10000 perm   2 sec   (5219 perm/sec)   p_kst 4.653000e-01   p_cons 9.790000e-01   p_joint 7.325000e-01

Outputting figure to mutsig2_images.part000000000100/LY9.3_2140_10000_0.4653_0.979_0.7325.png
                gene_name: LY9
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 49 percent done.
LYAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.506850e-02	ci left: 8.645785e-01	ci right 8.778045e-01	k: 8713	n:10000
Cons ci ratio: 5.030657e-02	ci left: 3.681846e-01	ci right 3.872867e-01	k: 3777	n:10000
KS ci ratio: 1.363646e-02	ci left: 8.858546e-01	ci right 8.981160e-01	k: 8921	n:10000
LYAR   10000 perm   2 sec   (5833 perm/sec)   p_kst 8.921000e-01   p_cons 3.777000e-01   p_joint 8.713000e-01

Outputting figure to mutsig2_images.part000000000100/LYAR.3_1172_10000_0.8921_0.3777_0.8713.png
                gene_name: LYAR
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 51 percent done.
LYG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.745976e-02	ci left: 3.083805e-01	ci right 3.267259e-01	k: 3175	n:10000
Cons ci ratio: 1.480595e-01	ci left: 6.063148e-02	ci right 7.042348e-02	k: 654	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
LYG1   10000 perm   2 sec   (6292 perm/sec)   p_kst 1   p_cons 6.540000e-02   p_joint 3.175000e-01

Joint ci ratio: 2.908611e-02	ci left: 4.689575e-01	ci right 4.828495e-01	k: 9518	n:20000
Cons ci ratio: 1.024948e-01	ci left: 6.464664e-02	ci right 7.167954e-02	k: 1362	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
LYG1   20000 perm   4 sec   (5390 perm/sec)   p_kst 1   p_cons 6.810000e-02   p_joint 4.759000e-01

Joint ci ratio: 3.705390e-02	ci left: 2.666388e-01	ci right 2.767388e-01	k: 8150	n:30000
Cons ci ratio: 8.949993e-02	ci left: 5.740394e-02	ci right 6.281498e-02	k: 1802	n:30000
KS ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
LYG1   30000 perm   6 sec   (5112 perm/sec)   p_kst 1   p_cons 6.006667e-02   p_joint 2.716667e-01

Outputting figure to mutsig2_images.part000000000100/LYG1.3_605_30000_1_0.060067_0.27167.png
                gene_name: LYG1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 54 percent done.
LYRM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.779080e-02	ci left: 1.945626e-01	ci right 2.104111e-01	k: 2024	n:10000
KS ci ratio: 1.949046e-02	ci left: 7.938493e-01	ci right 8.095745e-01	k: 8018	n:10000
LYRM5   10000 perm   1 sec   (6815 perm/sec)   p_kst 8.018000e-01   p_cons 2.024000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000100/LYRM5.3_281_10000_0.8018_0.2024_1.png
                gene_name: LYRM5
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
LZTS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.187494e-02	ci left: 1.468790e-01	ci right 1.611232e-01	k: 1539	n:10000
Cons ci ratio: 4.406368e-02	ci left: 4.319352e-01	ci right 4.514988e-01	k: 4417	n:10000
KS ci ratio: 2.362105e-01	ci left: 2.362888e-02	ci right 3.005075e-02	k: 267	n:10000
LZTS2   10000 perm   2 sec   (5692 perm/sec)   p_kst 2.670000e-02   p_cons 4.417000e-01   p_joint 1.539000e-01

Joint ci ratio: 9.286544e-02	ci left: 7.798885e-02	ci right 8.563325e-02	k: 1635	n:20000
Cons ci ratio: 3.080288e-02	ci left: 4.404920e-01	ci right 4.543233e-01	k: 8948	n:20000
KS ci ratio: 1.643708e-01	ci left: 2.537344e-02	ci right 2.996526e-02	k: 552	n:20000
LZTS2   20000 perm   4 sec   (4971 perm/sec)   p_kst 2.760000e-02   p_cons 4.474000e-01   p_joint 8.175000e-02

Joint ci ratio: 8.555457e-02	ci left: 6.259523e-02	ci right 6.822263e-02	k: 1961	n:30000
Cons ci ratio: 2.515286e-02	ci left: 4.417288e-01	ci right 4.530147e-01	k: 13421	n:30000
KS ci ratio: 1.356884e-01	ci left: 2.522737e-02	ci right 2.893165e-02	k: 811	n:30000
LZTS2   30000 perm   7 sec   (4441 perm/sec)   p_kst 2.703333e-02   p_cons 4.473667e-01   p_joint 6.536667e-02

Joint ci ratio: 7.385134e-02	ci left: 6.336482e-02	ci right 6.824844e-02	k: 2631	n:40000
Cons ci ratio: 2.179618e-02	ci left: 4.421941e-01	ci right 4.519636e-01	k: 17883	n:40000
KS ci ratio: 1.170479e-01	ci left: 2.567637e-02	ci right 2.889275e-02	k: 1090	n:40000
LZTS2   40000 perm   9 sec   (4370 perm/sec)   p_kst 2.725000e-02   p_cons 4.470750e-01   p_joint 6.577500e-02

Joint ci ratio: 6.893707e-02	ci left: 5.864227e-02	ci right 6.284891e-02	k: 3036	n:50000
Cons ci ratio: 2.002909e-02	ci left: 4.294100e-01	ci right 4.381177e-01	k: 21688	n:50000
KS ci ratio: 1.046812e-01	ci left: 2.585017e-02	ci right 2.872507e-02	k: 1363	n:50000
LZTS2   50000 perm   12 sec   (4301 perm/sec)   p_kst 2.726000e-02   p_cons 4.337600e-01   p_joint 6.072000e-02

Joint ci ratio: 6.317471e-02	ci left: 5.839185e-02	ci right 6.221748e-02	k: 3617	n:60000
Cons ci ratio: 1.837781e-02	ci left: 4.272823e-01	ci right 4.352243e-01	k: 25875	n:60000
KS ci ratio: 9.637476e-02	ci left: 2.553864e-02	ci right 2.814074e-02	k: 1609	n:60000
LZTS2   60000 perm   14 sec   (4232 perm/sec)   p_kst 2.681667e-02   p_cons 4.312500e-01   p_joint 6.028333e-02

Outputting figure to mutsig2_images.part000000000100/LZTS2.3_2026_60000_0.026817_0.43125_0.060283.png
                gene_name: LZTS2
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 59 percent done.
MAB21L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.837274e-02	ci left: 3.866946e-01	ci right 4.059658e-01	k: 3963	n:10000
Cons ci ratio: 4.300748e-02	ci left: 4.439070e-01	ci right 4.635200e-01	k: 4537	n:10000
KS ci ratio: 6.838763e-02	ci left: 2.387696e-01	ci right 2.557779e-01	k: 2472	n:10000
MAB21L1   10000 perm   2 sec   (5598 perm/sec)   p_kst 2.472000e-01   p_cons 4.537000e-01   p_joint 3.963000e-01

Outputting figure to mutsig2_images.part000000000100/MAB21L1.3_1084_10000_0.2472_0.4537_0.3963.png
                gene_name: MAB21L1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 61 percent done.
LSS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.373633e-01	ci left: 7.010558e-02	ci right 8.054343e-02	k: 752	n:10000
Cons ci ratio: 1.473387e-01	ci left: 6.121070e-02	ci right 7.104390e-02	k: 660	n:10000
KS ci ratio: 2.213698e-02	ci left: 7.496835e-01	ci right 7.665659e-01	k: 7582	n:10000
LSS   10000 perm   2 sec   (5885 perm/sec)   p_kst 7.582000e-01   p_cons 6.600000e-02   p_joint 7.520000e-02

Joint ci ratio: 2.121626e-02	ci left: 6.238173e-01	ci right 6.372448e-01	k: 12611	n:20000
Cons ci ratio: 1.024142e-01	ci left: 6.474425e-02	ci right 7.178190e-02	k: 1364	n:20000
KS ci ratio: 1.581545e-02	ci left: 7.483728e-01	ci right 7.603532e-01	k: 15088	n:20000
LSS   20000 perm   4 sec   (4866 perm/sec)   p_kst 7.544000e-01   p_cons 6.820000e-02   p_joint 6.305500e-01

Joint ci ratio: 7.811858e-02	ci left: 7.440048e-02	ci right 8.048165e-02	k: 2322	n:30000
Cons ci ratio: 8.304610e-02	ci left: 6.625519e-02	ci right 7.202859e-02	k: 2073	n:30000
KS ci ratio: 1.285870e-02	ci left: 7.510651e-01	ci right 7.608187e-01	k: 22679	n:30000
LSS   30000 perm   7 sec   (4602 perm/sec)   p_kst 7.559667e-01   p_cons 6.910000e-02   p_joint 7.740000e-02

Outputting figure to mutsig2_images.part000000000100/LSS.2_2287_30000_0.75597_0.0691_0.0774.png
                gene_name: LSS
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.080 

Current progress: 63 percent done.
LTBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.918207e-01	ci left: 2.107242e-03	ci right 4.397341e-03	k: 31	n:10000
Cons ci ratio: 5.766130e-01	ci left: 3.284168e-03	ci right 6.016771e-03	k: 45	n:10000
KS ci ratio: 8.375026e-02	ci left: 1.721207e-01	ci right 1.872663e-01	k: 1796	n:10000
LTBP3   10000 perm   2 sec   (4433 perm/sec)   p_kst 1.796000e-01   p_cons 4.500000e-03   p_joint 3.100000e-03

Joint ci ratio: 4.193426e-01	ci left: 3.440841e-03	ci right 5.307780e-03	k: 86	n:20000
Cons ci ratio: 4.012173e-01	ci left: 3.799699e-03	ci right 5.748583e-03	k: 94	n:20000
KS ci ratio: 5.852753e-02	ci left: 1.778108e-01	ci right 1.885815e-01	k: 3663	n:20000
LTBP3   20000 perm   5 sec   (3936 perm/sec)   p_kst 1.831500e-01   p_cons 4.700000e-03   p_joint 4.300000e-03

Joint ci ratio: 3.498785e-01	ci left: 3.439032e-03	ci right 4.926184e-03	k: 124	n:30000
Cons ci ratio: 3.293414e-01	ci left: 3.927077e-03	ci right 5.504534e-03	k: 140	n:30000
KS ci ratio: 4.789982e-02	ci left: 1.781104e-01	ci right 1.868845e-01	k: 5474	n:30000
LTBP3   30000 perm   8 sec   (3764 perm/sec)   p_kst 1.824667e-01   p_cons 4.666667e-03   p_joint 4.133333e-03

Joint ci ratio: 2.481443e-01	ci left: 5.430825e-03	ci right 6.992166e-03	k: 247	n:40000
Cons ci ratio: 2.785964e-01	ci left: 4.239341e-03	ci right 5.634023e-03	k: 196	n:40000
KS ci ratio: 4.141318e-02	ci left: 1.791966e-01	ci right 1.867995e-01	k: 7319	n:40000
LTBP3   40000 perm   11 sec   (3711 perm/sec)   p_kst 1.829750e-01   p_cons 4.900000e-03   p_joint 6.175000e-03

Joint ci ratio: 2.198171e-01	ci left: 5.625264e-03	ci right 7.032976e-03	k: 315	n:50000
Cons ci ratio: 2.245125e-01	ci left: 5.379655e-03	ci right 6.758638e-03	k: 302	n:50000
KS ci ratio: 3.685636e-02	ci left: 1.810886e-01	ci right 1.879081e-01	k: 9224	n:50000
LTBP3   50000 perm   14 sec   (3678 perm/sec)   p_kst 1.844800e-01   p_cons 6.040000e-03   p_joint 6.300000e-03

Joint ci ratio: 1.787681e-01	ci left: 7.239025e-03	ci right 8.675848e-03	k: 476	n:60000
Cons ci ratio: 2.059797e-01	ci left: 5.381914e-03	ci right 6.633261e-03	k: 359	n:60000
KS ci ratio: 3.378555e-02	ci left: 1.801449e-01	ci right 1.863524e-01	k: 10994	n:60000
LTBP3   60000 perm   17 sec   (3635 perm/sec)   p_kst 1.832333e-01   p_cons 5.983333e-03   p_joint 7.933333e-03

Joint ci ratio: 1.877983e-01	ci left: 5.604672e-03	ci right 6.779684e-03	k: 432	n:70000
Cons ci ratio: 1.897933e-01	ci left: 5.482145e-03	ci right 6.645086e-03	k: 423	n:70000
KS ci ratio: 3.125476e-02	ci left: 1.806102e-01	ci right 1.863589e-01	k: 12843	n:70000
LTBP3   70000 perm   20 sec   (3553 perm/sec)   p_kst 1.834714e-01   p_cons 6.042857e-03   p_joint 6.171429e-03

Joint ci ratio: 1.772728e-01	ci left: 5.536317e-03	ci right 6.624970e-03	k: 485	n:80000
Cons ci ratio: 1.780113e-01	ci left: 5.488528e-03	ci right 6.572765e-03	k: 481	n:80000
KS ci ratio: 2.918243e-02	ci left: 1.813450e-01	ci right 1.867279e-01	k: 14722	n:80000
LTBP3   80000 perm   23 sec   (3508 perm/sec)   p_kst 1.840250e-01   p_cons 6.012500e-03   p_joint 6.062500e-03

Joint ci ratio: 1.666369e-01	ci left: 5.601714e-03	ci right 6.630510e-03	k: 549	n:90000
Cons ci ratio: 1.674043e-01	ci left: 5.548468e-03	ci right 6.572650e-03	k: 544	n:90000
KS ci ratio: 2.754545e-02	ci left: 1.811526e-01	ci right 1.862233e-01	k: 16531	n:90000
LTBP3   90000 perm   26 sec   (3468 perm/sec)   p_kst 1.836778e-01   p_cons 6.044444e-03   p_joint 6.100000e-03

Joint ci ratio: 1.617356e-01	ci left: 5.367520e-03	ci right 6.321485e-03	k: 583	n:100000
Cons ci ratio: 1.579702e-01	ci left: 5.636380e-03	ci right 6.612599e-03	k: 611	n:100000
KS ci ratio: 2.610832e-02	ci left: 1.815528e-01	ci right 1.863655e-01	k: 18395	n:100000
LTBP3   100000 perm   29 sec   (3424 perm/sec)   p_kst 1.839500e-01   p_cons 6.110000e-03   p_joint 5.830000e-03

Joint ci ratio: 1.620581e-01	ci left: 4.862014e-03	ci right 5.728020e-03	k: 581	n:110000
Cons ci ratio: 1.508670e-01	ci left: 5.639628e-03	ci right 6.568521e-03	k: 670	n:110000
KS ci ratio: 2.488472e-02	ci left: 1.817682e-01	ci right 1.863575e-01	k: 20246	n:110000
LTBP3   110000 perm   33 sec   (3380 perm/sec)   p_kst 1.840545e-01   p_cons 6.090909e-03   p_joint 5.281818e-03

Joint ci ratio: 1.601696e-01	ci left: 4.568752e-03	ci right 5.372124e-03	k: 595	n:120000
Cons ci ratio: 1.444442e-01	ci left: 5.659221e-03	ci right 6.548235e-03	k: 731	n:120000
KS ci ratio: 2.381979e-02	ci left: 1.819356e-01	ci right 1.863297e-01	k: 22095	n:120000
LTBP3   120000 perm   36 sec   (3338 perm/sec)   p_kst 1.841250e-01   p_cons 6.091667e-03   p_joint 4.958333e-03

Joint ci ratio: 1.672535e-01	ci left: 3.855702e-03	ci right 4.566694e-03	k: 546	n:130000
Cons ci ratio: 1.384267e-01	ci left: 5.706217e-03	ci right 6.562191e-03	k: 796	n:130000
KS ci ratio: 2.285918e-02	ci left: 1.823640e-01	ci right 1.865885e-01	k: 23981	n:130000
LTBP3   130000 perm   39 sec   (3297 perm/sec)   p_kst 1.844692e-01   p_cons 6.123077e-03   p_joint 4.200000e-03

Joint ci ratio: 1.604974e-01	ci left: 3.902252e-03	ci right 4.589959e-03	k: 593	n:140000
Cons ci ratio: 1.335721e-01	ci left: 5.705722e-03	ci right 6.529221e-03	k: 855	n:140000
KS ci ratio: 2.201134e-02	ci left: 1.826631e-01	ci right 1.867356e-01	k: 25857	n:140000
LTBP3   140000 perm   43 sec   (3254 perm/sec)   p_kst 1.846929e-01   p_cons 6.107143e-03   p_joint 4.235714e-03

Joint ci ratio: 1.547416e-01	ci left: 3.930276e-03	ci right 4.595778e-03	k: 638	n:150000
Cons ci ratio: 1.297669e-01	ci left: 5.654131e-03	ci right 6.445145e-03	k: 906	n:150000
KS ci ratio: 2.124429e-02	ci left: 1.830245e-01	ci right 1.869610e-01	k: 27748	n:150000
LTBP3   150000 perm   47 sec   (3203 perm/sec)   p_kst 1.849867e-01   p_cons 6.040000e-03   p_joint 4.253333e-03

Joint ci ratio: 1.438657e-01	ci left: 4.286367e-03	ci right 4.956778e-03	k: 738	n:160000
Cons ci ratio: 1.255462e-01	ci left: 5.675879e-03	ci right 6.442186e-03	k: 968	n:160000
KS ci ratio: 2.057735e-02	ci left: 1.829755e-01	ci right 1.867860e-01	k: 29580	n:160000
LTBP3   160000 perm   51 sec   (3125 perm/sec)   p_kst 1.848750e-01   p_cons 6.050000e-03   p_joint 4.612500e-03

Joint ci ratio: 1.388778e-01	ci left: 4.340650e-03	ci right 4.994066e-03	k: 792	n:170000
Cons ci ratio: 1.206571e-01	ci left: 5.798126e-03	ci right 6.548277e-03	k: 1048	n:170000
KS ci ratio: 1.995043e-02	ci left: 1.832211e-01	ci right 1.869191e-01	k: 31461	n:170000
LTBP3   170000 perm   55 sec   (3083 perm/sec)   p_kst 1.850647e-01   p_cons 6.164706e-03   p_joint 4.658824e-03

Joint ci ratio: 1.341367e-01	ci left: 4.405366e-03	ci right 5.044079e-03	k: 849	n:180000
Cons ci ratio: 1.168196e-01	ci left: 5.853357e-03	ci right 6.584905e-03	k: 1118	n:180000
KS ci ratio: 1.939180e-02	ci left: 1.832196e-01	ci right 1.868128e-01	k: 33302	n:180000
LTBP3   180000 perm   59 sec   (3035 perm/sec)   p_kst 1.850111e-01   p_cons 6.211111e-03   p_joint 4.716667e-03

Joint ci ratio: 1.346316e-01	ci left: 4.142950e-03	ci right 4.746008e-03	k: 843	n:190000
Cons ci ratio: 1.140037e-01	ci left: 5.831510e-03	ci right 6.541578e-03	k: 1174	n:190000
KS ci ratio: 1.886543e-02	ci left: 1.834135e-01	ci right 1.869119e-01	k: 35180	n:190000
LTBP3   190000 perm   64 sec   (2950 perm/sec)   p_kst 1.851579e-01   p_cons 6.178947e-03   p_joint 4.436842e-03

Joint ci ratio: 1.326874e-01	ci left: 4.056610e-03	ci right 4.637900e-03	k: 868	n:200000
Cons ci ratio: 1.119786e-01	ci left: 5.748844e-03	ci right 6.435590e-03	k: 1217	n:200000
KS ci ratio: 1.838033e-02	ci left: 1.835793e-01	ci right 1.869898e-01	k: 37056	n:200000
LTBP3   200000 perm   70 sec   (2847 perm/sec)   p_kst 1.852800e-01   p_cons 6.085000e-03   p_joint 4.340000e-03

Joint ci ratio: 1.415621e-01	ci left: 3.380488e-03	ci right 3.900028e-03	k: 763	n:210000
Cons ci ratio: 1.087634e-01	ci left: 5.813124e-03	ci right 6.486332e-03	k: 1290	n:210000
KS ci ratio: 1.793506e-02	ci left: 1.836592e-01	ci right 1.869876e-01	k: 38917	n:210000
LTBP3   210000 perm   76 sec   (2777 perm/sec)   p_kst 1.853190e-01   p_cons 6.142857e-03   p_joint 3.633333e-03

Joint ci ratio: 1.409274e-01	ci left: 3.257509e-03	ci right 3.755714e-03	k: 770	n:220000
Cons ci ratio: 1.062026e-01	ci left: 5.827558e-03	ci right 6.485555e-03	k: 1353	n:220000
KS ci ratio: 1.752514e-02	ci left: 1.836557e-01	ci right 1.869072e-01	k: 40761	n:220000
LTBP3   220000 perm   81 sec   (2727 perm/sec)   p_kst 1.852773e-01   p_cons 6.150000e-03   p_joint 3.500000e-03

Joint ci ratio: 1.379196e-01	ci left: 3.258548e-03	ci right 3.745401e-03	k: 804	n:230000
Cons ci ratio: 1.040735e-01	ci left: 5.811259e-03	ci right 6.453456e-03	k: 1409	n:230000
KS ci ratio: 1.714729e-02	ci left: 1.835622e-01	ci right 1.867414e-01	k: 42584	n:230000
LTBP3   230000 perm   86 sec   (2662 perm/sec)   p_kst 1.851478e-01   p_cons 6.126087e-03   p_joint 3.495652e-03

Joint ci ratio: 1.346942e-01	ci left: 3.279736e-03	ci right 3.757378e-03	k: 843	n:240000
Cons ci ratio: 1.020676e-01	ci left: 5.796439e-03	ci right 6.423912e-03	k: 1465	n:240000
KS ci ratio: 1.678383e-02	ci left: 1.836393e-01	ci right 1.867517e-01	k: 44446	n:240000
LTBP3   240000 perm   91 sec   (2633 perm/sec)   p_kst 1.851917e-01   p_cons 6.104167e-03   p_joint 3.512500e-03

Joint ci ratio: 1.315357e-01	ci left: 3.307089e-03	ci right 3.776537e-03	k: 884	n:250000
Cons ci ratio: 9.968025e-02	ci left: 5.841424e-03	ci right 6.458110e-03	k: 1536	n:250000
KS ci ratio: 1.644690e-02	ci left: 1.836311e-01	ci right 1.866802e-01	k: 46288	n:250000
LTBP3   250000 perm   96 sec   (2614 perm/sec)   p_kst 1.851520e-01   p_cons 6.144000e-03   p_joint 3.536000e-03

Joint ci ratio: 1.159988e-01	ci left: 4.119325e-03	ci right 4.630281e-03	k: 1136	n:260000
Cons ci ratio: 9.742249e-02	ci left: 5.886858e-03	ci right 6.493460e-03	k: 1608	n:260000
KS ci ratio: 1.611879e-02	ci left: 1.838235e-01	ci right 1.868143e-01	k: 48182	n:260000
LTBP3   260000 perm   100 sec   (2596 perm/sec)   p_kst 1.853154e-01   p_cons 6.184615e-03   p_joint 4.369231e-03

Joint ci ratio: 1.240429e-01	ci left: 3.456529e-03	ci right 3.917189e-03	k: 994	n:270000
Cons ci ratio: 9.591622e-02	ci left: 5.853143e-03	ci right 6.446422e-03	k: 1659	n:270000
KS ci ratio: 1.581635e-02	ci left: 1.838729e-01	ci right 1.868079e-01	k: 50041	n:270000
LTBP3   270000 perm   105 sec   (2575 perm/sec)   p_kst 1.853370e-01   p_cons 6.144444e-03   p_joint 3.681481e-03

Joint ci ratio: 1.221559e-01	ci left: 3.440385e-03	ci right 3.891413e-03	k: 1025	n:280000
Cons ci ratio: 9.442219e-02	ci left: 5.828879e-03	ci right 6.409986e-03	k: 1712	n:280000
KS ci ratio: 1.554080e-02	ci left: 1.837163e-01	ci right 1.865973e-01	k: 51843	n:280000
LTBP3   280000 perm   110 sec   (2555 perm/sec)   p_kst 1.851536e-01   p_cons 6.114286e-03   p_joint 3.660714e-03

Joint ci ratio: 1.140286e-01	ci left: 3.827118e-03	ci right 4.293223e-03	k: 1176	n:290000
Cons ci ratio: 9.215947e-02	ci left: 5.914161e-03	ci right 6.488878e-03	k: 1797	n:290000
KS ci ratio: 1.526764e-02	ci left: 1.837979e-01	ci right 1.866291e-01	k: 53711	n:290000
LTBP3   290000 perm   114 sec   (2535 perm/sec)   p_kst 1.852103e-01   p_cons 6.196552e-03   p_joint 4.055172e-03

Joint ci ratio: 1.120929e-01	ci left: 3.832350e-03	ci right 4.290645e-03	k: 1217	n:300000
Cons ci ratio: 9.070867e-02	ci left: 5.905933e-03	ci right 6.470337e-03	k: 1855	n:300000
KS ci ratio: 1.501718e-02	ci left: 1.836983e-01	ci right 1.864811e-01	k: 55526	n:300000
LTBP3   300000 perm   119 sec   (2515 perm/sec)   p_kst 1.850867e-01   p_cons 6.183333e-03   p_joint 4.056667e-03

Joint ci ratio: 1.105616e-01	ci left: 3.815347e-03	ci right 4.264970e-03	k: 1251	n:310000
Cons ci ratio: 8.913703e-02	ci left: 5.923537e-03	ci right 6.479304e-03	k: 1921	n:310000
KS ci ratio: 1.477202e-02	ci left: 1.837406e-01	ci right 1.864782e-01	k: 57383	n:310000
LTBP3   310000 perm   124 sec   (2495 perm/sec)   p_kst 1.851065e-01   p_cons 6.196774e-03   p_joint 4.035484e-03

Joint ci ratio: 1.145398e-01	ci left: 3.437930e-03	ci right 3.858638e-03	k: 1166	n:320000
Cons ci ratio: 8.802387e-02	ci left: 5.888154e-03	ci right 6.433347e-03	k: 1970	n:320000
KS ci ratio: 1.453472e-02	ci left: 1.838585e-01	ci right 1.865535e-01	k: 59265	n:320000
LTBP3   320000 perm   129 sec   (2474 perm/sec)   p_kst 1.852031e-01   p_cons 6.156250e-03   p_joint 3.643750e-03

Joint ci ratio: 1.123919e-01	ci left: 3.466247e-03	ci right 3.881938e-03	k: 1211	n:330000
Cons ci ratio: 8.656416e-02	ci left: 5.908326e-03	ci right 6.445856e-03	k: 2037	n:330000
KS ci ratio: 1.431037e-02	ci left: 1.839303e-01	ci right 1.865843e-01	k: 61134	n:330000
LTBP3   330000 perm   135 sec   (2453 perm/sec)   p_kst 1.852545e-01   p_cons 6.172727e-03   p_joint 3.669697e-03

Joint ci ratio: 1.057323e-01	ci left: 3.813512e-03	ci right 4.242068e-03	k: 1368	n:340000
Cons ci ratio: 8.529715e-02	ci left: 5.910108e-03	ci right 6.439538e-03	k: 2098	n:340000
KS ci ratio: 1.409363e-02	ci left: 1.840509e-01	ci right 1.866662e-01	k: 63021	n:340000
LTBP3   340000 perm   140 sec   (2433 perm/sec)   p_kst 1.853559e-01   p_cons 6.170588e-03   p_joint 4.023529e-03

Joint ci ratio: 1.039986e-01	ci left: 3.832538e-03	ci right 4.255738e-03	k: 1414	n:350000
Cons ci ratio: 8.394742e-02	ci left: 5.931425e-03	ci right 6.453945e-03	k: 2166	n:350000
KS ci ratio: 1.389406e-02	ci left: 1.839997e-01	ci right 1.865769e-01	k: 64850	n:350000
LTBP3   350000 perm   145 sec   (2414 perm/sec)   p_kst 1.852857e-01   p_cons 6.188571e-03   p_joint 4.040000e-03

Joint ci ratio: 1.024179e-01	ci left: 3.845147e-03	ci right 4.262898e-03	k: 1458	n:360000
Cons ci ratio: 8.282778e-02	ci left: 5.927134e-03	ci right 6.441975e-03	k: 2225	n:360000
KS ci ratio: 1.370741e-02	ci left: 1.838491e-01	ci right 1.863893e-01	k: 66642	n:360000
LTBP3   360000 perm   150 sec   (2394 perm/sec)   p_kst 1.851167e-01   p_cons 6.180556e-03   p_joint 4.050000e-03

Joint ci ratio: 9.332333e-02	ci left: 4.524391e-03	ci right 4.969907e-03	k: 1755	n:370000
Cons ci ratio: 8.146528e-02	ci left: 5.965484e-03	ci right 6.474728e-03	k: 2300	n:370000
KS ci ratio: 1.352469e-02	ci left: 1.837823e-01	ci right 1.862875e-01	k: 68462	n:370000
LTBP3   370000 perm   156 sec   (2373 perm/sec)   p_kst 1.850324e-01   p_cons 6.216216e-03   p_joint 4.743243e-03

Outputting figure to mutsig2_images.part000000000100/LTBP3.2_4024_370000_0.18503_0.0062162_0.0047432.png
                gene_name: LTBP3
               theta_stop: 0.093 
                    nperm: 370000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.0062 
      ci_cons_bounds_left: 0.0060 
     ci_cons_bounds_right: 0.0065 
                  p_joint: 0.0047 
     ci_joint_bounds_left: 0.0045 
    ci_joint_bounds_right: 0.0050 

Current progress: 66 percent done.
LTV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.175301e-01	ci left: 9.418721e-02	ci right 1.060469e-01	k: 1000	n:10000
Cons ci ratio: 1.307207e-01	ci left: 7.708281e-02	ci right 8.796184e-02	k: 824	n:10000
KS ci ratio: 4.947173e-02	ci left: 3.760446e-01	ci right 3.952221e-01	k: 3856	n:10000
LTV1   10000 perm   2 sec   (5150 perm/sec)   p_kst 3.856000e-01   p_cons 8.240000e-02   p_joint 1.000000e-01

Joint ci ratio: 9.579764e-02	ci left: 7.353756e-02	ci right 8.098590e-02	k: 1544	n:20000
Cons ci ratio: 9.062170e-02	ci left: 8.166013e-02	ci right 8.946085e-02	k: 1710	n:20000
KS ci ratio: 3.502220e-02	ci left: 3.783480e-01	ci right 3.918854e-01	k: 7702	n:20000
LTV1   20000 perm   4 sec   (4775 perm/sec)   p_kst 3.851000e-01   p_cons 8.550000e-02   p_joint 7.720000e-02

Outputting figure to mutsig2_images.part000000000100/LTV1.2_1472_20000_0.3851_0.0855_0.0772.png
                gene_name: LTV1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.081 

Current progress: 68 percent done.
LUZP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.703364e-02	ci left: 8.338874e-01	ci right 8.483133e-01	k: 8412	n:10000
Cons ci ratio: 2.892069e-02	ci left: 6.380444e-01	ci right 6.568696e-01	k: 6475	n:10000
KS ci ratio: 4.278265e-02	ci left: 4.465016e-01	ci right 4.661239e-01	k: 4563	n:10000
LUZP4   10000 perm   2 sec   (6405 perm/sec)   p_kst 4.563000e-01   p_cons 6.475000e-01   p_joint 8.412000e-01

Outputting figure to mutsig2_images.part000000000100/LUZP4.2_958_10000_0.4563_0.6475_0.8412.png
                gene_name: LUZP4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 71 percent done.
LY6E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.524428e-02	ci left: 4.189723e-01	ci right 4.384693e-01	k: 4287	n:10000
Cons ci ratio: 6.155970e-02	ci left: 2.795337e-01	ci right 2.973897e-01	k: 2884	n:10000
KS ci ratio: 1.909731e-02	ci left: 8.003440e-01	ci right 8.158761e-01	k: 8082	n:10000
LY6E   10000 perm   1 sec   (7240 perm/sec)   p_kst 8.082000e-01   p_cons 2.884000e-01   p_joint 4.287000e-01

Outputting figure to mutsig2_images.part000000000100/LY6E.2_408_10000_0.8082_0.2884_0.4287.png
                gene_name: LY6E
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 73 percent done.
LY86
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.372364e-02	ci left: 2.122093e-01	ci right 2.285539e-01	k: 2203	n:10000
Cons ci ratio: 1.763111e-01	ci left: 4.293441e-02	ci right 5.133194e-02	k: 470	n:10000
KS ci ratio: 7.374510e-02	ci left: 2.121107e-01	ci right 2.284526e-01	k: 2202	n:10000
LY86   10000 perm   1 sec   (6935 perm/sec)   p_kst 2.202000e-01   p_cons 4.700000e-02   p_joint 2.203000e-01

Joint ci ratio: 1.233061e-01	ci left: 4.512682e-02	ci right 5.110543e-02	k: 961	n:20000
Cons ci ratio: 1.250222e-01	ci left: 4.391389e-02	ci right 4.981875e-02	k: 936	n:20000
KS ci ratio: 5.264454e-02	ci left: 2.113037e-01	ci right 2.227787e-01	k: 4340	n:20000
LY86   20000 perm   4 sec   (5456 perm/sec)   p_kst 2.170000e-01   p_cons 4.680000e-02   p_joint 4.805000e-02

Joint ci ratio: 1.266724e-01	ci left: 2.897069e-02	ci right 3.292083e-02	k: 927	n:30000
Cons ci ratio: 1.236785e-01	ci left: 3.039280e-02	ci right 3.443175e-02	k: 971	n:30000
KS ci ratio: 4.282260e-02	ci left: 2.136363e-01	ci right 2.230183e-01	k: 6549	n:30000
LY86   30000 perm   6 sec   (5275 perm/sec)   p_kst 2.183000e-01   p_cons 3.236667e-02   p_joint 3.090000e-02

Joint ci ratio: 1.178274e-01	ci left: 2.533639e-02	ci right 2.853278e-02	k: 1076	n:40000
Cons ci ratio: 1.076251e-01	ci left: 3.036981e-02	ci right 3.384855e-02	k: 1283	n:40000
KS ci ratio: 3.725567e-02	ci left: 2.127203e-01	ci right 2.208208e-01	k: 8670	n:40000
LY86   40000 perm   8 sec   (5171 perm/sec)   p_kst 2.167500e-01   p_cons 3.207500e-02   p_joint 2.690000e-02

Joint ci ratio: 1.047207e-01	ci left: 2.583068e-02	ci right 2.870456e-02	k: 1362	n:50000
Cons ci ratio: 9.711020e-02	ci left: 3.002533e-02	ci right 3.310937e-02	k: 1577	n:50000
KS ci ratio: 3.325153e-02	ci left: 2.138705e-01	ci right 2.211223e-01	k: 10874	n:50000
LY86   50000 perm   10 sec   (5085 perm/sec)   p_kst 2.174800e-01   p_cons 3.154000e-02   p_joint 2.724000e-02

Joint ci ratio: 9.734204e-02	ci left: 2.503417e-02	ci right 2.761193e-02	k: 1578	n:60000
Cons ci ratio: 8.844685e-02	ci left: 3.029618e-02	ci right 3.311603e-02	k: 1901	n:60000
KS ci ratio: 3.035884e-02	ci left: 2.141381e-01	ci right 2.207559e-01	k: 13046	n:60000
LY86   60000 perm   12 sec   (4991 perm/sec)   p_kst 2.174333e-01   p_cons 3.168333e-02   p_joint 2.630000e-02

Outputting figure to mutsig2_images.part000000000100/LY86.2_509_60000_0.21743_0.031683_0.0263.png
                gene_name: LY86
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.028 

Current progress: 76 percent done.
LY96
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.095346e-02	ci left: 6.062845e-01	ci right 6.254480e-01	k: 6159	n:10000
Cons ci ratio: 3.280251e-02	ci left: 5.783790e-01	ci right 5.977697e-01	k: 5881	n:10000
KS ci ratio: 4.618013e-02	ci left: 4.090055e-01	ci right 4.284419e-01	k: 4187	n:10000
LY96   10000 perm   2 sec   (5907 perm/sec)   p_kst 4.187000e-01   p_cons 5.881000e-01   p_joint 6.159000e-01

Outputting figure to mutsig2_images.part000000000100/LY96.2_503_10000_0.4187_0.5881_0.6159.png
                gene_name: LY96
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 78 percent done.
LYPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.276264e-01	ci left: 8.067319e-02	ci right 9.176924e-02	k: 861	n:10000
Cons ci ratio: 1.650363e-01	ci left: 4.897794e-02	ci right 5.788448e-02	k: 533	n:10000
KS ci ratio: 2.242059e-02	ci left: 7.449300e-01	ci right 7.619221e-01	k: 7535	n:10000
LYPD3   10000 perm   2 sec   (6363 perm/sec)   p_kst 7.535000e-01   p_cons 5.330000e-02   p_joint 8.610000e-02

Joint ci ratio: 9.308249e-02	ci left: 7.764631e-02	ci right 8.527589e-02	k: 1628	n:20000
Cons ci ratio: 1.176937e-01	ci left: 4.944921e-02	ci right 5.568168e-02	k: 1050	n:20000
KS ci ratio: 1.579198e-02	ci left: 7.489272e-01	ci right 7.608986e-01	k: 15099	n:20000
LYPD3   20000 perm   4 sec   (5555 perm/sec)   p_kst 7.549500e-01   p_cons 5.250000e-02   p_joint 8.140000e-02

Joint ci ratio: 7.246714e-02	ci left: 8.563719e-02	ci right 9.210935e-02	k: 2665	n:30000
Cons ci ratio: 9.682870e-02	ci left: 4.928641e-02	ci right 5.433417e-02	k: 1553	n:30000
KS ci ratio: 1.289703e-02	ci left: 7.499578e-01	ci right 7.597262e-01	k: 22646	n:30000
LYPD3   30000 perm   6 sec   (5214 perm/sec)   p_kst 7.548667e-01   p_cons 5.176667e-02   p_joint 8.883333e-02

Outputting figure to mutsig2_images.part000000000100/LYPD3.2_1061_30000_0.75487_0.051767_0.088833.png
                gene_name: LYPD3
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.092 

Current progress: 80 percent done.
LYPD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.954424e-02	ci left: 6.281901e-01	ci right 6.471296e-01	k: 6377	n:10000
Cons ci ratio: 1.763529e-02	ci left: 8.242208e-01	ci right 8.389855e-01	k: 8317	n:10000
KS ci ratio: 3.557503e-02	ci left: 5.384831e-01	ci right 5.580887e-01	k: 5483	n:10000
LYPD4   10000 perm   2 sec   (6628 perm/sec)   p_kst 5.483000e-01   p_cons 8.317000e-01   p_joint 6.377000e-01

Outputting figure to mutsig2_images.part000000000100/LYPD4.2_757_10000_0.5483_0.8317_0.6377.png
                gene_name: LYPD4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 83 percent done.
LYSMD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.458655e-02	ci left: 2.604260e-01	ci right 2.779087e-01	k: 2691	n:10000
Cons ci ratio: 9.349504e-02	ci left: 1.424659e-01	ci right 1.565389e-01	k: 1494	n:10000
KS ci ratio: 7.485634e-03	ci left: 9.611050e-01	ci right 9.684210e-01	k: 9649	n:10000
LYSMD1   10000 perm   2 sec   (5472 perm/sec)   p_kst 9.649000e-01   p_cons 1.494000e-01   p_joint 2.691000e-01

Outputting figure to mutsig2_images.part000000000100/LYSMD1.2_736_10000_0.9649_0.1494_0.2691.png
                gene_name: LYSMD1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 85 percent done.
LZIC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.483237e-03	ci left: 9.780229e-01	ci right 9.834920e-01	k: 9809	n:10000
Cons ci ratio: 3.519381e-03	ci left: 9.901638e-01	ci right 9.937407e-01	k: 9921	n:10000
KS ci ratio: 1.154273e-01	ci left: 9.740099e-02	ci right 1.094311e-01	k: 1033	n:10000
LZIC   10000 perm   2 sec   (6112 perm/sec)   p_kst 1.033000e-01   p_cons 9.921000e-01   p_joint 9.809000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 2.573737e-03	ci left: 9.901286e-01	ci right 9.927254e-01	k: 19830	n:20000
KS ci ratio: 8.170914e-02	ci left: 9.896761e-02	ci right 1.074481e-01	k: 2063	n:20000
LZIC   20000 perm   4 sec   (5439 perm/sec)   p_kst 1.031500e-01   p_cons 9.915000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000100/LZIC.2_597_20000_0.10315_0.9915_1.png
                gene_name: LZIC
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
LZTFL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.132409e-01	ci left: 1.009091e-01	ci right 1.131209e-01	k: 1069	n:10000
Cons ci ratio: 1.132409e-01	ci left: 1.009091e-01	ci right 1.131209e-01	k: 1069	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
LZTFL1   10000 perm   2 sec   (6132 perm/sec)   p_kst 1   p_cons 1.069000e-01   p_joint 1.069000e-01

Joint ci ratio: 5.276876e-02	ci left: 2.105115e-01	ci right 2.219711e-01	k: 4324	n:20000
Cons ci ratio: 7.963807e-02	ci left: 1.037306e-01	ci right 1.123837e-01	k: 2160	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
LZTFL1   20000 perm   4 sec   (5247 perm/sec)   p_kst 1   p_cons 1.080000e-01   p_joint 2.162000e-01

Outputting figure to mutsig2_images.part000000000100/LZTFL1.2_940_20000_1_0.108_0.2162.png
                gene_name: LZTFL1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 90 percent done.
LZTS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.640872e-02	ci left: 5.269672e-01	ci right 5.466113e-01	k: 5368	n:10000
Cons ci ratio: 8.400682e-02	ci left: 1.712357e-01	ci right 1.863519e-01	k: 1787	n:10000
KS ci ratio: 2.583216e-02	ci left: 6.880881e-01	ci right 7.061970e-01	k: 6972	n:10000
LZTS1   10000 perm   2 sec   (5978 perm/sec)   p_kst 6.972000e-01   p_cons 1.787000e-01   p_joint 5.368000e-01

Outputting figure to mutsig2_images.part000000000100/LZTS1.2_1803_10000_0.6972_0.1787_0.5368.png
                gene_name: LZTS1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 93 percent done.
M6PR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.644727e-03	ci left: 9.493973e-01	ci right 9.577359e-01	k: 9537	n:10000
Cons ci ratio: 2.752760e-02	ci left: 6.603835e-01	ci right 6.789176e-01	k: 6697	n:10000
KS ci ratio: 9.344901e-03	ci left: 9.417001e-01	ci right 9.506377e-01	k: 9463	n:10000
M6PR   10000 perm   2 sec   (5784 perm/sec)   p_kst 9.463000e-01   p_cons 6.697000e-01   p_joint 9.537000e-01

Outputting figure to mutsig2_images.part000000000100/M6PR.2_858_10000_0.9463_0.6697_0.9537.png
                gene_name: M6PR
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 95 percent done.
MACROD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.571973e-01	ci left: 1.977670e-02	ci right 2.570584e-02	k: 226	n:10000
Cons ci ratio: 5.599475e-02	ci left: 3.195935e-01	ci right 3.381063e-01	k: 3288	n:10000
KS ci ratio: 7.029257e-01	ci left: 2.024975e-03	ci right 4.279939e-03	k: 30	n:10000
MACROD1   10000 perm   1 sec   (6808 perm/sec)   p_kst 3.000000e-03   p_cons 3.288000e-01   p_joint 2.260000e-02

Joint ci ratio: 1.578823e-01	ci left: 2.753511e-02	ci right 3.230286e-02	k: 597	n:20000
Cons ci ratio: 3.978339e-02	ci left: 3.202503e-01	ci right 3.333001e-01	k: 6535	n:20000
KS ci ratio: 4.373811e-01	ci left: 3.128462e-03	ci right 4.920482e-03	k: 79	n:20000
MACROD1   20000 perm   3 sec   (5845 perm/sec)   p_kst 3.950000e-03   p_cons 3.267500e-01   p_joint 2.985000e-02

Joint ci ratio: 1.201466e-01	ci left: 3.220433e-02	ci right 3.635316e-02	k: 1027	n:30000
Cons ci ratio: 3.264363e-02	ci left: 3.193022e-01	ci right 3.299318e-01	k: 9738	n:30000
KS ci ratio: 3.648346e-01	ci left: 3.135523e-03	ci right 4.563214e-03	k: 114	n:30000
MACROD1   30000 perm   5 sec   (5509 perm/sec)   p_kst 3.800000e-03   p_cons 3.246000e-01   p_joint 3.423333e-02

Joint ci ratio: 9.031771e-02	ci left: 4.294013e-02	ci right 4.702626e-02	k: 1798	n:40000
Cons ci ratio: 2.812153e-02	ci left: 3.223282e-01	ci right 3.315469e-01	k: 13077	n:40000
KS ci ratio: 3.122316e-01	ci left: 3.312947e-03	ci right 4.560770e-03	k: 156	n:40000
MACROD1   40000 perm   8 sec   (5292 perm/sec)   p_kst 3.900000e-03   p_cons 3.269250e-01   p_joint 4.495000e-02

Joint ci ratio: 7.607843e-02	ci left: 4.849859e-02	ci right 5.235382e-02	k: 2520	n:50000
Cons ci ratio: 2.522772e-02	ci left: 3.215128e-01	ci right 3.297475e-01	k: 16281	n:50000
KS ci ratio: 2.830962e-01	ci left: 3.279683e-03	ci right 4.379160e-03	k: 190	n:50000
MACROD1   50000 perm   10 sec   (5119 perm/sec)   p_kst 3.800000e-03   p_cons 3.256200e-01   p_joint 5.040000e-02

Joint ci ratio: 7.406830e-02	ci left: 4.294565e-02	ci right 4.626525e-02	k: 2675	n:60000
Cons ci ratio: 2.306500e-02	ci left: 3.212026e-01	ci right 3.287143e-01	k: 19497	n:60000
KS ci ratio: 2.608407e-01	ci left: 3.261149e-03	ci right 4.254469e-03	k: 224	n:60000
MACROD1   60000 perm   12 sec   (4982 perm/sec)   p_kst 3.733333e-03   p_cons 3.249500e-01   p_joint 4.458333e-02

Joint ci ratio: 5.026342e-02	ci left: 7.792996e-02	ci right 8.196209e-02	k: 5595	n:70000
Cons ci ratio: 2.139630e-02	ci left: 3.206188e-01	ci right 3.275673e-01	k: 22686	n:70000
KS ci ratio: 2.440719e-01	ci left: 3.223509e-03	ci right 4.132683e-03	k: 256	n:70000
MACROD1   70000 perm   14 sec   (4844 perm/sec)   p_kst 3.657143e-03   p_cons 3.240857e-01   p_joint 7.992857e-02

Joint ci ratio: 4.695904e-02	ci left: 7.824036e-02	ci right 8.201515e-02	k: 6409	n:80000
Cons ci ratio: 1.998247e-02	ci left: 3.215426e-01	ci right 3.280451e-01	k: 25983	n:80000
KS ci ratio: 2.309734e-01	ci left: 3.173258e-03	ci right 4.013376e-03	k: 286	n:80000
MACROD1   80000 perm   17 sec   (4674 perm/sec)   p_kst 3.575000e-03   p_cons 3.247875e-01   p_joint 8.011250e-02

Joint ci ratio: 4.435120e-02	ci left: 7.809261e-02	ci right 8.164564e-02	k: 7187	n:90000
Cons ci ratio: 1.885350e-02	ci left: 3.214081e-01	ci right 3.275365e-01	k: 29202	n:90000
KS ci ratio: 2.180607e-01	ci left: 3.187709e-03	ci right 3.978153e-03	k: 321	n:90000
MACROD1   90000 perm   20 sec   (4564 perm/sec)   p_kst 3.566667e-03   p_cons 3.244667e-01   p_joint 7.985556e-02

Joint ci ratio: 4.208004e-02	ci left: 7.816728e-02	ci right 8.153714e-02	k: 7984	n:100000
Cons ci ratio: 1.791738e-02	ci left: 3.208002e-01	ci right 3.266100e-01	k: 32370	n:100000
KS ci ratio: 2.082709e-01	ci left: 3.162390e-03	ci right 3.906864e-03	k: 352	n:100000
MACROD1   100000 perm   22 sec   (4471 perm/sec)   p_kst 3.520000e-03   p_cons 3.237000e-01   p_joint 7.984000e-02

Joint ci ratio: 4.018519e-02	ci left: 7.801601e-02	ci right 8.122437e-02	k: 8757	n:110000
Cons ci ratio: 1.708287e-02	ci left: 3.209533e-01	ci right 3.264924e-01	k: 35609	n:110000
KS ci ratio: 2.002152e-01	ci left: 3.125051e-03	ci right 3.828802e-03	k: 381	n:110000
MACROD1   110000 perm   25 sec   (4380 perm/sec)   p_kst 3.463636e-03   p_cons 3.237182e-01   p_joint 7.960909e-02

Joint ci ratio: 4.635121e-02	ci left: 5.494472e-02	ci right 5.756011e-02	k: 6749	n:120000
Cons ci ratio: 1.633237e-02	ci left: 3.216931e-01	ci right 3.269987e-01	k: 38921	n:120000
KS ci ratio: 1.913984e-01	ci left: 3.149932e-03	ci right 3.824414e-03	k: 417	n:120000
MACROD1   120000 perm   28 sec   (4279 perm/sec)   p_kst 3.475000e-03   p_cons 3.243417e-01   p_joint 5.624167e-02

Joint ci ratio: 4.440907e-02	ci left: 5.528904e-02	ci right 5.780771e-02	k: 7350	n:130000
Cons ci ratio: 1.568462e-02	ci left: 3.219934e-01	ci right 3.270913e-01	k: 42190	n:130000
KS ci ratio: 1.846758e-01	ci left: 3.134865e-03	ci right 3.779904e-03	k: 448	n:130000
MACROD1   130000 perm   31 sec   (4159 perm/sec)   p_kst 3.446154e-03   p_cons 3.245385e-01   p_joint 5.653846e-02

Joint ci ratio: 4.267512e-02	ci left: 5.562853e-02	ci right 5.806129e-02	k: 7957	n:140000
Cons ci ratio: 1.510804e-02	ci left: 3.222615e-01	ci right 3.271744e-01	k: 45460	n:140000
KS ci ratio: 1.780576e-01	ci left: 3.142782e-03	ci right 3.763779e-03	k: 482	n:140000
MACROD1   140000 perm   34 sec   (4069 perm/sec)   p_kst 3.442857e-03   p_cons 3.247143e-01   p_joint 5.683571e-02

Joint ci ratio: 4.116014e-02	ci left: 5.584518e-02	ci right 5.819865e-02	k: 8552	n:150000
Cons ci ratio: 1.460379e-02	ci left: 3.221041e-01	ci right 3.268493e-01	k: 48671	n:150000
KS ci ratio: 1.707826e-01	ci left: 3.201051e-03	ci right 3.805058e-03	k: 524	n:150000
MACROD1   150000 perm   38 sec   (3958 perm/sec)   p_kst 3.493333e-03   p_cons 3.244733e-01   p_joint 5.701333e-02

Joint ci ratio: 3.332397e-02	ci left: 7.827203e-02	ci right 8.093073e-02	k: 12735	n:160000
Cons ci ratio: 1.414244e-02	ci left: 3.221062e-01	ci right 3.267002e-01	k: 51904	n:160000
KS ci ratio: 1.647701e-01	ci left: 3.234507e-03	ci right 3.821210e-03	k: 563	n:160000
MACROD1   160000 perm   41 sec   (3889 perm/sec)   p_kst 3.518750e-03   p_cons 3.244000e-01   p_joint 7.959375e-02

Joint ci ratio: 2.981683e-02	ci left: 9.091056e-02	ci right 9.366807e-02	k: 15688	n:170000
Cons ci ratio: 1.373364e-02	ci left: 3.217460e-01	ci right 3.262012e-01	k: 55075	n:170000
KS ci ratio: 1.589546e-01	ci left: 3.281301e-03	ci right 3.853481e-03	k: 605	n:170000
MACROD1   170000 perm   45 sec   (3809 perm/sec)   p_kst 3.558824e-03   p_cons 3.239706e-01   p_joint 9.228235e-02

Joint ci ratio: 2.873619e-02	ci left: 9.234651e-02	ci right 9.504437e-02	k: 16864	n:180000
Cons ci ratio: 1.334920e-02	ci left: 3.217271e-01	ci right 3.260563e-01	k: 58300	n:180000
KS ci ratio: 1.534768e-01	ci left: 3.333905e-03	ci right 3.893381e-03	k: 649	n:180000
MACROD1   180000 perm   49 sec   (3704 perm/sec)   p_kst 3.605556e-03   p_cons 3.238889e-01   p_joint 9.368889e-02

Joint ci ratio: 3.032494e-02	ci left: 7.960972e-02	ci right 8.206625e-02	k: 15358	n:190000
Cons ci ratio: 1.300847e-02	ci left: 3.212705e-01	ci right 3.254823e-01	k: 61441	n:190000
KS ci ratio: 1.505004e-01	ci left: 3.290068e-03	ci right 3.830516e-03	k: 675	n:190000
MACROD1   190000 perm   52 sec   (3641 perm/sec)   p_kst 3.552632e-03   p_cons 3.233737e-01   p_joint 8.083158e-02

Joint ci ratio: 3.572055e-02	ci left: 5.577961e-02	ci right 5.781326e-02	k: 11358	n:200000
Cons ci ratio: 1.266690e-02	ci left: 3.217443e-01	ci right 3.258508e-01	k: 64759	n:200000
KS ci ratio: 1.479022e-01	ci left: 3.241079e-03	ci right 3.763475e-03	k: 699	n:200000
MACROD1   200000 perm   56 sec   (3584 perm/sec)   p_kst 3.495000e-03   p_cons 3.237950e-01   p_joint 5.679000e-02

Joint ci ratio: 2.884269e-02	ci left: 7.968039e-02	ci right 8.201691e-02	k: 16977	n:210000
Cons ci ratio: 1.237171e-02	ci left: 3.214374e-01	ci right 3.254436e-01	k: 67922	n:210000
KS ci ratio: 1.435559e-01	ci left: 3.284043e-03	ci right 3.796478e-03	k: 742	n:210000
MACROD1   210000 perm   59 sec   (3537 perm/sec)   p_kst 3.533333e-03   p_cons 3.234381e-01   p_joint 8.084286e-02

Joint ci ratio: 3.407687e-02	ci left: 5.576874e-02	ci right 5.770659e-02	k: 12481	n:220000
Cons ci ratio: 1.208782e-02	ci left: 3.214636e-01	ci right 3.253775e-01	k: 71152	n:220000
KS ci ratio: 1.398395e-01	ci left: 3.310145e-03	ci right 3.812166e-03	k: 782	n:220000
MACROD1   220000 perm   63 sec   (3492 perm/sec)   p_kst 3.554545e-03   p_cons 3.234182e-01   p_joint 5.673182e-02

Joint ci ratio: 3.339485e-02	ci left: 5.557709e-02	ci right 5.746889e-02	k: 12999	n:230000
Cons ci ratio: 1.182532e-02	ci left: 3.213885e-01	ci right 3.252159e-01	k: 74359	n:230000
KS ci ratio: 1.373217e-01	ci left: 3.287938e-03	ci right 3.776879e-03	k: 811	n:230000
MACROD1   230000 perm   67 sec   (3441 perm/sec)   p_kst 3.526087e-03   p_cons 3.233000e-01   p_joint 5.651739e-02

Joint ci ratio: 3.263848e-02	ci left: 5.576976e-02	ci right 5.762430e-02	k: 13606	n:240000
Cons ci ratio: 1.157745e-02	ci left: 3.213872e-01	ci right 3.251338e-01	k: 77582	n:240000
KS ci ratio: 1.345344e-01	ci left: 3.287790e-03	ci right 3.765991e-03	k: 845	n:240000
MACROD1   240000 perm   71 sec   (3396 perm/sec)   p_kst 3.520833e-03   p_cons 3.232583e-01   p_joint 5.669167e-02

Joint ci ratio: 3.192769e-02	ci left: 5.595935e-02	ci right 5.777894e-02	k: 14216	n:250000
Cons ci ratio: 1.133945e-02	ci left: 3.215824e-01	ci right 3.252537e-01	k: 80854	n:250000
KS ci ratio: 1.311643e-01	ci left: 3.326434e-03	ci right 3.797191e-03	k: 889	n:250000
MACROD1   250000 perm   75 sec   (3352 perm/sec)   p_kst 3.556000e-03   p_cons 3.234160e-01   p_joint 5.686400e-02

Joint ci ratio: 3.294831e-02	ci left: 5.077947e-02	ci right 5.248439e-02	k: 13423	n:260000
Cons ci ratio: 1.111624e-02	ci left: 3.217364e-01	ci right 3.253367e-01	k: 84119	n:260000
KS ci ratio: 1.287289e-01	ci left: 3.325012e-03	ci right 3.786164e-03	k: 923	n:260000
MACROD1   260000 perm   79 sec   (3308 perm/sec)   p_kst 3.550000e-03   p_cons 3.235346e-01   p_joint 5.162692e-02

Joint ci ratio: 3.238425e-02	ci left: 5.063990e-02	ci right 5.231048e-02	k: 13897	n:270000
Cons ci ratio: 1.091550e-02	ci left: 3.214877e-01	ci right 3.250198e-01	k: 87278	n:270000
KS ci ratio: 1.265570e-01	ci left: 3.316596e-03	ci right 3.768238e-03	k: 955	n:270000
MACROD1   270000 perm   83 sec   (3264 perm/sec)   p_kst 3.537037e-03   p_cons 3.232519e-01   p_joint 5.147037e-02

Joint ci ratio: 3.178529e-02	ci left: 5.070195e-02	ci right 5.234307e-02	k: 14425	n:280000
Cons ci ratio: 1.071474e-02	ci left: 3.216853e-01	ci right 3.251541e-01	k: 90557	n:280000
KS ci ratio: 1.248087e-01	ci left: 3.291541e-03	ci right 3.733120e-03	k: 982	n:280000
MACROD1   280000 perm   87 sec   (3218 perm/sec)   p_kst 3.507143e-03   p_cons 3.234179e-01   p_joint 5.151786e-02

Joint ci ratio: 3.117664e-02	ci left: 5.089004e-02	ci right 5.250514e-02	k: 14991	n:290000
Cons ci ratio: 1.052218e-02	ci left: 3.219730e-01	ci right 3.253822e-01	k: 93866	n:290000
KS ci ratio: 1.229478e-01	ci left: 3.278280e-03	ci right 3.711046e-03	k: 1012	n:290000
MACROD1   290000 perm   91 sec   (3171 perm/sec)   p_kst 3.489655e-03   p_cons 3.236759e-01   p_joint 5.169310e-02

Joint ci ratio: 3.067136e-02	ci left: 5.084415e-02	ci right 5.243119e-02	k: 15490	n:300000
Cons ci ratio: 1.035524e-02	ci left: 3.215830e-01	ci right 3.249337e-01	k: 96977	n:300000
KS ci ratio: 1.214602e-01	ci left: 3.249787e-03	ci right 3.673227e-03	k: 1037	n:300000
MACROD1   300000 perm   96 sec   (3134 perm/sec)   p_kst 3.456667e-03   p_cons 3.232567e-01   p_joint 5.163333e-02

Joint ci ratio: 3.016304e-02	ci left: 5.088791e-02	ci right 5.244952e-02	k: 16016	n:310000
Cons ci ratio: 1.018938e-02	ci left: 3.215021e-01	ci right 3.247980e-01	k: 100176	n:310000
KS ci ratio: 1.193512e-01	ci left: 3.260717e-03	ci right 3.677683e-03	k: 1074	n:310000
MACROD1   310000 perm   100 sec   (3096 perm/sec)   p_kst 3.464516e-03   p_cons 3.231484e-01   p_joint 5.166452e-02

Joint ci ratio: 2.963576e-02	ci left: 5.107187e-02	ci right 5.261126e-02	k: 16588	n:320000
Cons ci ratio: 1.002859e-02	ci left: 3.215421e-01	ci right 3.247861e-01	k: 103412	n:320000
KS ci ratio: 1.175607e-01	ci left: 3.258888e-03	ci right 3.668935e-03	k: 1107	n:320000
MACROD1   320000 perm   105 sec   (3048 perm/sec)   p_kst 3.459375e-03   p_cons 3.231625e-01   p_joint 5.183750e-02

Joint ci ratio: 2.915131e-02	ci left: 5.119073e-02	ci right 5.270806e-02	k: 17142	n:330000
Cons ci ratio: 9.877018e-03	ci left: 3.214984e-01	ci right 3.246926e-01	k: 106621	n:330000
KS ci ratio: 1.154936e-01	ci left: 3.277815e-03	ci right 3.682497e-03	k: 1147	n:330000
MACROD1   330000 perm   110 sec   (3008 perm/sec)   p_kst 3.475758e-03   p_cons 3.230939e-01   p_joint 5.194545e-02

Joint ci ratio: 2.872498e-02	ci left: 5.118302e-02	ci right 5.267757e-02	k: 17655	n:340000
Cons ci ratio: 9.730682e-03	ci left: 3.215222e-01	ci right 3.246690e-01	k: 109852	n:340000
KS ci ratio: 1.141602e-01	ci left: 3.258538e-03	ci right 3.655882e-03	k: 1174	n:340000
MACROD1   340000 perm   114 sec   (2974 perm/sec)   p_kst 3.452941e-03   p_cons 3.230941e-01   p_joint 5.192647e-02

Joint ci ratio: 2.831928e-02	ci left: 5.116739e-02	ci right 5.264004e-02	k: 18165	n:350000
Cons ci ratio: 9.586092e-03	ci left: 3.217533e-01	ci right 3.248553e-01	k: 113156	n:350000
KS ci ratio: 1.125436e-01	ci left: 3.259825e-03	ci right 3.651324e-03	k: 1208	n:350000
MACROD1   350000 perm   119 sec   (2940 perm/sec)   p_kst 3.451429e-03   p_cons 3.233029e-01   p_joint 5.190000e-02

Joint ci ratio: 3.281001e-02	ci left: 3.751281e-02	ci right 3.876686e-02	k: 13729	n:360000
Cons ci ratio: 9.446739e-03	ci left: 3.220190e-01	ci right 3.250782e-01	k: 116477	n:360000
KS ci ratio: 1.112185e-01	ci left: 3.247575e-03	ci right 3.632709e-03	k: 1237	n:360000
MACROD1   360000 perm   124 sec   (2907 perm/sec)   p_kst 3.436111e-03   p_cons 3.235472e-01   p_joint 3.813611e-02

Joint ci ratio: 3.235453e-02	ci left: 3.754174e-02	ci right 3.877902e-02	k: 14118	n:370000
Cons ci ratio: 9.317545e-03	ci left: 3.220710e-01	ci right 3.250886e-01	k: 119724	n:370000
KS ci ratio: 1.098956e-01	ci left: 3.238641e-03	ci right 3.617851e-03	k: 1267	n:370000
MACROD1   370000 perm   129 sec   (2875 perm/sec)   p_kst 3.424324e-03   p_cons 3.235784e-01   p_joint 3.815676e-02

Joint ci ratio: 3.188439e-02	ci left: 3.764500e-02	ci right 3.886732e-02	k: 14536	n:380000
Cons ci ratio: 9.197601e-03	ci left: 3.219259e-01	ci right 3.249031e-01	k: 122897	n:380000
KS ci ratio: 1.083678e-01	ci left: 3.245565e-03	ci right 3.619965e-03	k: 1303	n:380000
MACROD1   380000 perm   134 sec   (2842 perm/sec)   p_kst 3.428947e-03   p_cons 3.234132e-01   p_joint 3.825263e-02

Joint ci ratio: 3.554413e-02	ci left: 2.970578e-02	ci right 3.078327e-02	k: 11794	n:390000
Cons ci ratio: 9.080468e-03	ci left: 3.218705e-01	ci right 3.248091e-01	k: 126102	n:390000
KS ci ratio: 1.070223e-01	ci left: 3.244681e-03	ci right 3.614039e-03	k: 1336	n:390000
MACROD1   390000 perm   140 sec   (2783 perm/sec)   p_kst 3.425641e-03   p_cons 3.233385e-01   p_joint 3.024103e-02

Joint ci ratio: 3.512763e-02	ci left: 2.966189e-02	ci right 3.072493e-02	k: 12076	n:400000
Cons ci ratio: 8.967495e-03	ci left: 3.218281e-01	ci right 3.247295e-01	k: 129311	n:400000
KS ci ratio: 1.058808e-01	ci left: 3.234133e-03	ci right 3.598119e-03	k: 1365	n:400000
MACROD1   400000 perm   145 sec   (2753 perm/sec)   p_kst 3.412500e-03   p_cons 3.232775e-01   p_joint 3.019000e-02

Joint ci ratio: 3.467916e-02	ci left: 2.969761e-02	ci right 3.074807e-02	k: 12390	n:410000
Cons ci ratio: 8.854785e-03	ci left: 3.219779e-01	ci right 3.248441e-01	k: 132598	n:410000
KS ci ratio: 1.041034e-01	ci left: 3.266878e-03	ci right 3.628000e-03	k: 1412	n:410000
MACROD1   410000 perm   150 sec   (2724 perm/sec)   p_kst 3.443902e-03   p_cons 3.234098e-01   p_joint 3.021951e-02

Joint ci ratio: 3.428085e-02	ci left: 2.967504e-02	ci right 3.071241e-02	k: 12680	n:420000
Cons ci ratio: 8.748741e-03	ci left: 3.219949e-01	ci right 3.248266e-01	k: 135832	n:420000
KS ci ratio: 1.029803e-01	ci left: 3.260993e-03	ci right 3.617340e-03	k: 1443	n:420000
MACROD1   420000 perm   156 sec   (2696 perm/sec)   p_kst 3.435714e-03   p_cons 3.234095e-01   p_joint 3.019048e-02

Joint ci ratio: 3.391482e-02	ci left: 2.962130e-02	ci right 3.064551e-02	k: 12956	n:430000
Cons ci ratio: 8.649084e-03	ci left: 3.218765e-01	ci right 3.246748e-01	k: 139008	n:430000
KS ci ratio: 1.016855e-01	ci left: 3.269001e-03	ci right 3.621463e-03	k: 1480	n:430000
MACROD1   430000 perm   161 sec   (2665 perm/sec)   p_kst 3.441860e-03   p_cons 3.232744e-01   p_joint 3.013023e-02

Joint ci ratio: 3.347171e-02	ci left: 2.972334e-02	ci right 3.073740e-02	k: 13300	n:440000
Cons ci ratio: 8.548004e-03	ci left: 3.220065e-01	ci right 3.247731e-01	k: 142291	n:440000
KS ci ratio: 1.003388e-01	ci left: 3.283319e-03	ci right 3.632361e-03	k: 1520	n:440000
MACROD1   440000 perm   167 sec   (2637 perm/sec)   p_kst 3.454545e-03   p_cons 3.233886e-01   p_joint 3.022727e-02

Joint ci ratio: 2.994395e-02	ci left: 3.613707e-02	ci right 3.723779e-02	k: 16508	n:450000
Cons ci ratio: 8.450214e-03	ci left: 3.221399e-01	ci right 3.248757e-01	k: 145578	n:450000
KS ci ratio: 9.920388e-02	ci left: 3.286194e-03	ci right 3.631360e-03	k: 1555	n:450000
MACROD1   450000 perm   172 sec   (2610 perm/sec)   p_kst 3.455556e-03   p_cons 3.235067e-01   p_joint 3.668444e-02

Outputting figure to mutsig2_images.part000000000100/MACROD1.2_1018_450000_0.0034556_0.32351_0.036684.png
                gene_name: MACROD1
               theta_stop: 0.099 
                    nperm: 450000 
                     p_ks: 0.0035 
        ci_ks_bounds_left: 0.0033 
       ci_ks_bounds_right: 0.0036 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.037 

Current progress: 98 percent done.
MAD1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.851041e-02	ci left: 4.989503e-01	ci right 5.186445e-01	k: 5088	n:10000
Cons ci ratio: 8.446737e-02	ci left: 1.696626e-01	ci right 1.847259e-01	k: 1771	n:10000
KS ci ratio: 7.926439e-03	ci left: 9.568097e-01	ci right 9.645190e-01	k: 9608	n:10000
MAD1L1   10000 perm   2 sec   (5855 perm/sec)   p_kst 9.608000e-01   p_cons 1.771000e-01   p_joint 5.088000e-01

Outputting figure to mutsig2_images.part000000000100/MAD1L1.2_2225_10000_0.9608_0.1771_0.5088.png
                gene_name: MAD1L1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000100
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 100 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1714>
Subject: Job 9894007: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1714>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000101> was used as the working directory.
Started at Sat Oct  6 00:17:32 2012
Results reported at Sat Oct  6 00:31:45 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000101.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000101.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 101  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000101.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    881.94 sec.
    Max Memory :      3616 MB
    Max Swap   :      6008 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
101
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 101
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 101: processing genes 9016 - 9105
Calculating significance of each gene.
Using projection method.
9016	MAD2L2	6.603555e-01
9017	MADCAM1	1
9018	MADD	4.844388e-01
9019	MAEA	5.587149e-01
9020	MAEL	1.182686e-02
9021	MAF	6.116074e-01
9022	MAF1	1
9023	MAFB	7.571695e-01
9024	MAFF	1
9025	MAFG	1
9026	MAFK	1
9027	MAG	5.724151e-01
9028	MAGEA1	1
9029	MAGEA10	8.715092e-02
9030	MAGEA11	5.232136e-01
9031	MAGEA12	3.615298e-02
9032	MAGEA3	6.094131e-01
9033	MAGEA4	3.568992e-01
9034	MAGEA5	1.991252e-01
9035	MAGEA6	2.194956e-01
9036	MAGEA8	3.596832e-01
9037	MAGEB1	4.076353e-03
9038	MAGEB10	7.597224e-01
9039	MAGEB16	7.887496e-01
9040	MAGEB18	8.263217e-02
9041	MAGEB2	2.900336e-01
9042	MAGEB3	4.632903e-01
9043	MAGEB4	1.702481e-02
9044	MAGEB6	6.596075e-01
9045	MAGEC1	2.409259e-02
9046	MAGEC2	5.495160e-04
9047	MAGEC3	4.085351e-02
9048	MAGED1	1.731355e-01
9049	MAGED2	1.476466e-01
9050	MAGEE1	7.968164e-02
9051	MAGEE2	4.658351e-01
9052	MAGEF1	8.064892e-01
9053	MAGEH1	5.537736e-01
9054	MAGEL2	1.073937e-01
9055	MAGI1	2.653368e-01
9056	MAGI2	1.697513e-01
9057	MAGI3	7.861727e-01
9058	MAGIX	4.960473e-01
9059	MAGOH	1
9060	MAGOHB	5.357851e-01
9061	MAGT1	1
9062	MAK	2.800316e-01
9063	MAK16	7.652963e-01
9064	MAL	3.877261e-01
9065	MAL2	1
9066	MALL	5.059584e-01
9067	MALT1	1.989831e-01
9068	MAMDC2	7.014740e-01
9069	MAMDC4	1
9070	MAML1	9.126576e-01
9071	MAML2	8.891627e-01
9072	MAML3	9.916028e-01
9073	MAMLD1	1.961833e-02
9074	MAMSTR	1
9075	MAN1A1	1.783243e-01
9076	MAN1A2	7.701162e-01
9077	MAN1B1	7.159062e-01
In gene MAN1C1 the following bins exceed PROBCAP:
    READ-AG-3580	categ 6	N = 1432    n = 1	mu =   1.72e-07
9078	MAN1C1	9.392001e-02
9079	MAN2A1	1.083771e-02
9080	MAN2A2	5.543253e-01
9081	MAN2B1	9.274860e-01
9082	MAN2B2	9.912458e-01
9083	MAN2C1	5.985175e-01
9084	MANBA	1.647825e-01
9085	MANBAL	1.890095e-01
9086	MANEA	1
9087	MANEAL	1
9088	MANF	1
9089	MANSC1	8.231532e-02
9090	MAOA	2.738239e-01
9091	MAOB	7.296242e-01
9092	MAP1A	9.994049e-01
9093	MAP1B	1.139114e-02
9094	MAP1D	1
9095	MAP1LC3A	1
9096	MAP1LC3B	1
9097	MAP1LC3B2	1.621511e-01
9098	MAP1LC3C	5.533417e-01
9099	MAP1S	8.164934e-01
In gene MAP2 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 5804    n = 1	mu =   8.55e-07
9100	MAP2	1.538118e-03
9101	MAP2K1	6.487665e-02
9102	MAP2K2	7.317509e-01
9103	MAP2K3	1.012430e-03
In gene MAP2K4 the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 1125    n = 1	mu =   2.96e-07
9104	MAP2K4	2.643389e-07
9105	MAP2K5	1.730410e-01
Done

Running MutSig 2:
Scatter job 101: processing genes 9016 - 9105
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MAP1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.882037e-02	ci left: 3.823146e-01	ci right 4.015484e-01	k: 3919	n:10000
Cons ci ratio: 2.701897e-02	ci left: 6.686406e-01	ci right 6.870556e-01	k: 6779	n:10000
KS ci ratio: 6.445550e-02	ci left: 2.612176e-01	ci right 2.787166e-01	k: 2699	n:10000
MAP1B   10000 perm   3 sec   (3284 perm/sec)   p_kst 2.699000e-01   p_cons 6.779000e-01   p_joint 3.919000e-01

Outputting figure to mutsig2_images.part000000000101/MAP1B.30_7435_10000_0.2699_0.6779_0.3919.png
                gene_name: MAP1B
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 2 percent done.
MAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.693762e-02	ci left: 4.011345e-01	ci right 4.205174e-01	k: 4108	n:10000
Cons ci ratio: 1.083156e-01	ci left: 1.094933e-01	ci right 1.221314e-01	k: 1157	n:10000
KS ci ratio: 2.005892e-02	ci left: 7.844174e-01	ci right 8.004119e-01	k: 7925	n:10000
MAP2   10000 perm   3 sec   (3547 perm/sec)   p_kst 7.925000e-01   p_cons 1.157000e-01   p_joint 4.108000e-01

Joint ci ratio: 3.397678e-02	ci left: 3.927518e-01	ci right 4.063774e-01	k: 7991	n:20000
Cons ci ratio: 7.629437e-02	ci left: 1.121338e-01	ci right 1.210780e-01	k: 2331	n:20000
KS ci ratio: 1.481533e-02	ci left: 7.719733e-01	ci right 7.835458e-01	k: 15556	n:20000
MAP2   20000 perm   6 sec   (3277 perm/sec)   p_kst 7.778000e-01   p_cons 1.165500e-01   p_joint 3.995500e-01

Outputting figure to mutsig2_images.part000000000101/MAP2.25_5804_20000_0.7778_0.11655_0.39955.png
                gene_name: MAP2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 4 percent done.
MAGEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.979435e-02	ci left: 4.825547e-01	ci right 5.022497e-01	k: 4924	n:10000
Cons ci ratio: 1.365061e-02	ci left: 8.856497e-01	ci right 8.979211e-01	k: 8919	n:10000
KS ci ratio: 5.048895e-02	ci left: 3.664936e-01	ci right 3.855787e-01	k: 3760	n:10000
MAGEC1   10000 perm   2 sec   (5005 perm/sec)   p_kst 3.760000e-01   p_cons 8.919000e-01   p_joint 4.924000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEC1.16_3437_10000_0.376_0.8919_0.4924.png
                gene_name: MAGEC1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 6 percent done.
MADD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.714711e-02	ci left: 5.169577e-01	ci right 5.366267e-01	k: 5268	n:10000
Cons ci ratio: 4.010601e-02	ci left: 4.786573e-01	ci right 4.983494e-01	k: 4885	n:10000
KS ci ratio: 5.007201e-02	ci left: 3.703732e-01	ci right 3.894968e-01	k: 3799	n:10000
MADD   10000 perm   3 sec   (3719 perm/sec)   p_kst 3.799000e-01   p_cons 4.885000e-01   p_joint 5.268000e-01

Outputting figure to mutsig2_images.part000000000101/MADD.14_5084_10000_0.3799_0.4885_0.5268.png
                gene_name: MADD
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 8 percent done.
MAGI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.665763e-02	ci left: 4.040236e-01	ci right 4.234267e-01	k: 4137	n:10000
Cons ci ratio: 7.363793e-02	ci left: 2.126039e-01	ci right 2.289591e-01	k: 2207	n:10000
KS ci ratio: 3.439163e-02	ci left: 5.552156e-01	ci right 5.747465e-01	k: 5650	n:10000
MAGI1   10000 perm   2 sec   (4224 perm/sec)   p_kst 5.650000e-01   p_cons 2.207000e-01   p_joint 4.137000e-01

Outputting figure to mutsig2_images.part000000000101/MAGI1.13_4715_10000_0.565_0.2207_0.4137.png
                gene_name: MAGI1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 9 percent done.
MAN2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.457014e-02	ci left: 2.605249e-01	ci right 2.780097e-01	k: 2692	n:10000
Cons ci ratio: 1.996134e-02	ci left: 7.860396e-01	ci right 8.019887e-01	k: 7941	n:10000
KS ci ratio: 9.273055e-02	ci left: 1.445251e-01	ci right 1.586785e-01	k: 1515	n:10000
MAN2A1   10000 perm   2 sec   (4818 perm/sec)   p_kst 1.515000e-01   p_cons 7.941000e-01   p_joint 2.692000e-01

Outputting figure to mutsig2_images.part000000000101/MAN2A1.12_3523_10000_0.1515_0.7941_0.2692.png
                gene_name: MAN2A1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 11 percent done.
MAGI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.769032e-01	ci left: 4.264711e-02	ci right 5.101943e-02	k: 467	n:10000
Cons ci ratio: 2.353098e-01	ci left: 2.381734e-02	ci right 3.026216e-02	k: 269	n:10000
KS ci ratio: 7.432953e-02	ci left: 2.094474e-01	ci right 2.257174e-01	k: 2175	n:10000
MAGI2   10000 perm   2 sec   (4073 perm/sec)   p_kst 2.175000e-01   p_cons 2.690000e-02   p_joint 4.670000e-02

Joint ci ratio: 1.223076e-01	ci left: 4.585485e-02	ci right 5.187718e-02	k: 976	n:20000
Cons ci ratio: 1.698176e-01	ci left: 2.374280e-02	ci right 2.819646e-02	k: 518	n:20000
KS ci ratio: 5.297197e-02	ci left: 2.092241e-01	ci right 2.206589e-01	k: 4298	n:20000
MAGI2   20000 perm   5 sec   (3743 perm/sec)   p_kst 2.149000e-01   p_cons 2.590000e-02   p_joint 4.880000e-02

Joint ci ratio: 1.031049e-01	ci left: 4.359187e-02	ci right 4.836322e-02	k: 1378	n:30000
Cons ci ratio: 1.391621e-01	ci left: 2.397097e-02	ci right 2.758833e-02	k: 772	n:30000
KS ci ratio: 4.286027e-02	ci left: 2.133386e-01	ci right 2.227160e-01	k: 6540	n:30000
MAGI2   30000 perm   8 sec   (3652 perm/sec)   p_kst 2.180000e-01   p_cons 2.573333e-02   p_joint 4.593333e-02

Joint ci ratio: 8.581808e-02	ci left: 4.744357e-02	ci right 5.172212e-02	k: 1982	n:40000
Cons ci ratio: 1.190832e-01	ci left: 2.480228e-02	ci right 2.796698e-02	k: 1054	n:40000
KS ci ratio: 3.703490e-02	ci left: 2.147316e-01	ci right 2.228592e-01	k: 8751	n:40000
MAGI2   40000 perm   11 sec   (3576 perm/sec)   p_kst 2.187750e-01   p_cons 2.635000e-02   p_joint 4.955000e-02

Joint ci ratio: 7.204442e-02	ci left: 5.388254e-02	ci right 5.792921e-02	k: 2794	n:50000
Cons ci ratio: 1.073399e-01	ci left: 2.458376e-02	ci right 2.739164e-02	k: 1298	n:50000
KS ci ratio: 3.306316e-02	ci left: 2.157988e-01	ci right 2.230738e-01	k: 10971	n:50000
MAGI2   50000 perm   14 sec   (3517 perm/sec)   p_kst 2.194200e-01   p_cons 2.596000e-02   p_joint 5.588000e-02

Joint ci ratio: 7.249438e-02	ci left: 4.477966e-02	ci right 4.816439e-02	k: 2787	n:60000
Cons ci ratio: 9.811050e-02	ci left: 2.464370e-02	ci right 2.720243e-02	k: 1554	n:60000
KS ci ratio: 2.993987e-02	ci left: 2.188787e-01	ci right 2.255482e-01	k: 13332	n:60000
MAGI2   60000 perm   17 sec   (3462 perm/sec)   p_kst 2.222000e-01   p_cons 2.590000e-02   p_joint 4.645000e-02

Outputting figure to mutsig2_images.part000000000101/MAGI2.11_4456_60000_0.2222_0.0259_0.04645.png
                gene_name: MAGI2
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.048 

Current progress: 13 percent done.
MAMLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.795168e-02	ci left: 6.535385e-01	ci right 6.721666e-01	k: 6629	n:10000
Cons ci ratio: 5.043521e-02	ci left: 3.669909e-01	ci right 3.860810e-01	k: 3765	n:10000
KS ci ratio: 4.369932e-02	ci left: 4.360249e-01	ci right 4.556067e-01	k: 4458	n:10000
MAMLD1   10000 perm   2 sec   (4461 perm/sec)   p_kst 4.458000e-01   p_cons 3.765000e-01   p_joint 6.629000e-01

Outputting figure to mutsig2_images.part000000000101/MAMLD1.11_3467_10000_0.4458_0.3765_0.6629.png
                gene_name: MAMLD1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 15 percent done.
MAP2K4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.635411e-01	ci left: 5.460790e-03	ci right 8.835916e-03	k: 70	n:10000
Cons ci ratio: 6.432188e-01	ci left: 2.522631e-03	ci right 4.980467e-03	k: 36	n:10000
KS ci ratio: 3.571839e-01	ci left: 9.776646e-03	ci right 1.411465e-02	k: 118	n:10000
MAP2K4   10000 perm   2 sec   (5198 perm/sec)   p_kst 1.180000e-02   p_cons 3.600000e-03   p_joint 7.000000e-03

Joint ci ratio: 6.042186e-01	ci left: 1.471505e-03	ci right 2.780040e-03	k: 41	n:20000
Cons ci ratio: 4.643804e-01	ci left: 2.729407e-03	ci right 4.420000e-03	k: 70	n:20000
KS ci ratio: 2.610287e-01	ci left: 9.694399e-03	ci right 1.265029e-02	k: 222	n:20000
MAP2K4   20000 perm   4 sec   (4677 perm/sec)   p_kst 1.110000e-02   p_cons 3.500000e-03   p_joint 2.050000e-03

Joint ci ratio: 4.296732e-01	ci left: 2.174473e-03	ci right 3.391668e-03	k: 82	n:30000
Cons ci ratio: 3.933177e-01	ci left: 2.652810e-03	ci right 3.979598e-03	k: 98	n:30000
KS ci ratio: 2.197008e-01	ci left: 9.345984e-03	ci right 1.168360e-02	k: 314	n:30000
MAP2K4   30000 perm   7 sec   (4353 perm/sec)   p_kst 1.046667e-02   p_cons 3.266667e-03   p_joint 2.733333e-03

Joint ci ratio: 4.974483e-01	ci left: 1.166699e-03	ci right 1.958501e-03	k: 61	n:40000
Cons ci ratio: 3.380645e-01	ci left: 2.784672e-03	ci right 3.939287e-03	k: 133	n:40000
KS ci ratio: 1.858457e-01	ci left: 9.977125e-03	ci right 1.204478e-02	k: 439	n:40000
MAP2K4   40000 perm   9 sec   (4279 perm/sec)   p_kst 1.097500e-02   p_cons 3.325000e-03   p_joint 1.525000e-03

Joint ci ratio: 4.648834e-01	ci left: 1.091526e-03	ci right 1.768490e-03	k: 70	n:50000
Cons ci ratio: 2.900375e-01	ci left: 3.112579e-03	ci right 4.186319e-03	k: 181	n:50000
KS ci ratio: 1.642739e-01	ci left: 1.033442e-02	ci right 1.220297e-02	k: 562	n:50000
MAP2K4   50000 perm   12 sec   (4212 perm/sec)   p_kst 1.124000e-02   p_cons 3.620000e-03   p_joint 1.400000e-03

Joint ci ratio: 4.786328e-01	ci left: 8.508389e-04	ci right 1.399260e-03	k: 66	n:60000
Cons ci ratio: 2.626038e-01	ci left: 3.214419e-03	ci right 4.201211e-03	k: 221	n:60000
KS ci ratio: 1.471877e-01	ci left: 1.082281e-02	ci right 1.255824e-02	k: 700	n:60000
MAP2K4   60000 perm   15 sec   (4118 perm/sec)   p_kst 1.166667e-02   p_cons 3.683333e-03   p_joint 1.100000e-03

Joint ci ratio: 4.353004e-01	ci left: 9.063154e-04	ci right 1.422186e-03	k: 80	n:70000
Cons ci ratio: 2.479759e-01	ci left: 3.116247e-03	ci right 4.011396e-03	k: 248	n:70000
KS ci ratio: 1.362555e-01	ci left: 1.088895e-02	ci right 1.249477e-02	k: 817	n:70000
MAP2K4   70000 perm   17 sec   (4046 perm/sec)   p_kst 1.167143e-02   p_cons 3.542857e-03   p_joint 1.142857e-03

Joint ci ratio: 4.717060e-01	ci left: 6.601168e-04	ci right 1.077455e-03	k: 68	n:80000
Cons ci ratio: 2.510843e-01	ci left: 2.656324e-03	ci right 3.430411e-03	k: 242	n:80000
KS ci ratio: 1.294929e-01	ci left: 1.059117e-02	ci right 1.206959e-02	k: 905	n:80000
MAP2K4   80000 perm   20 sec   (3984 perm/sec)   p_kst 1.131250e-02   p_cons 3.025000e-03   p_joint 8.500000e-04

Joint ci ratio: 5.017317e-01	ci left: 5.087743e-04	ci right 8.580500e-04	k: 60	n:90000
Cons ci ratio: 2.355929e-01	ci left: 2.705514e-03	ci right 3.438206e-03	k: 275	n:90000
KS ci ratio: 1.213220e-01	ci left: 1.077054e-02	ci right 1.217232e-02	k: 1031	n:90000
MAP2K4   90000 perm   23 sec   (3923 perm/sec)   p_kst 1.145556e-02   p_cons 3.055556e-03   p_joint 6.666667e-04

Joint ci ratio: 4.618078e-01	ci left: 5.545562e-04	ci right 8.954853e-04	k: 71	n:100000
Cons ci ratio: 2.237473e-01	ci left: 2.717714e-03	ci right 3.411606e-03	k: 305	n:100000
KS ci ratio: 1.150286e-01	ci left: 1.081923e-02	ci right 1.214933e-02	k: 1147	n:100000
MAP2K4   100000 perm   26 sec   (3865 perm/sec)   p_kst 1.147000e-02   p_cons 3.050000e-03   p_joint 7.100000e-04

Joint ci ratio: 2.248867e-01	ci left: 2.444869e-03	ci right 3.072714e-03	k: 302	n:110000
Cons ci ratio: 2.128911e-01	ci left: 2.745663e-03	ci right 3.408239e-03	k: 337	n:110000
KS ci ratio: 1.094914e-01	ci left: 1.088713e-02	ci right 1.215700e-02	k: 1266	n:110000
MAP2K4   110000 perm   29 sec   (3808 perm/sec)   p_kst 1.150909e-02   p_cons 3.063636e-03   p_joint 2.745455e-03

Joint ci ratio: 2.264159e-01	ci left: 2.209649e-03	ci right 2.781484e-03	k: 298	n:120000
Cons ci ratio: 2.054344e-01	ci left: 2.714276e-03	ci right 3.343455e-03	k: 362	n:120000
KS ci ratio: 1.029689e-01	ci left: 1.131849e-02	ci right 1.255527e-02	k: 1431	n:120000
MAP2K4   120000 perm   32 sec   (3741 perm/sec)   p_kst 1.192500e-02   p_cons 3.016667e-03   p_joint 2.483333e-03

Joint ci ratio: 2.253076e-01	ci left: 2.061429e-03	ci right 2.591930e-03	k: 301	n:130000
Cons ci ratio: 1.961901e-01	ci left: 2.761191e-03	ci right 3.369003e-03	k: 397	n:130000
KS ci ratio: 9.877906e-02	ci left: 1.137764e-02	ci right 1.256736e-02	k: 1555	n:130000
MAP2K4   130000 perm   35 sec   (3691 perm/sec)   p_kst 1.196154e-02   p_cons 3.053846e-03   p_joint 2.315385e-03

Joint ci ratio: 2.185413e-01	ci left: 2.042353e-03	ci right 2.550041e-03	k: 320	n:140000
Cons ci ratio: 1.885282e-01	ci left: 2.788333e-03	ci right 3.375404e-03	k: 430	n:140000
KS ci ratio: 9.572776e-02	ci left: 1.126880e-02	ci right 1.240869e-02	k: 1656	n:140000
MAP2K4   140000 perm   38 sec   (3646 perm/sec)   p_kst 1.182857e-02   p_cons 3.071429e-03   p_joint 2.285714e-03

Joint ci ratio: 2.280059e-01	ci left: 1.742521e-03	ci right 2.197075e-03	k: 294	n:150000
Cons ci ratio: 1.836955e-01	ci left: 2.748629e-03	ci right 3.310854e-03	k: 453	n:150000
KS ci ratio: 9.299623e-02	ci left: 1.116194e-02	ci right 1.225705e-02	k: 1755	n:150000
MAP2K4   150000 perm   42 sec   (3595 perm/sec)   p_kst 1.170000e-02   p_cons 3.020000e-03   p_joint 1.960000e-03

Joint ci ratio: 2.424432e-01	ci left: 1.433596e-03	ci right 1.834810e-03	k: 260	n:160000
Cons ci ratio: 1.788405e-01	ci left: 2.725997e-03	ci right 3.267261e-03	k: 478	n:160000
KS ci ratio: 9.021558e-02	ci left: 1.113607e-02	ci right 1.219424e-02	k: 1865	n:160000
MAP2K4   160000 perm   45 sec   (3549 perm/sec)   p_kst 1.165625e-02   p_cons 2.987500e-03   p_joint 1.625000e-03

Joint ci ratio: 2.357640e-01	ci left: 1.432217e-03	ci right 1.820391e-03	k: 275	n:170000
Cons ci ratio: 1.745249e-01	ci left: 2.700575e-03	ci right 3.222487e-03	k: 502	n:170000
KS ci ratio: 8.729119e-02	ci left: 1.121150e-02	ci right 1.224055e-02	k: 1992	n:170000
MAP2K4   170000 perm   49 sec   (3498 perm/sec)   p_kst 1.171765e-02   p_cons 2.952941e-03   p_joint 1.617647e-03

Joint ci ratio: 2.239003e-01	ci left: 1.509732e-03	ci right 1.895490e-03	k: 305	n:180000
Cons ci ratio: 1.679689e-01	ci left: 2.763250e-03	ci right 3.275186e-03	k: 542	n:180000
KS ci ratio: 8.495890e-02	ci left: 1.119202e-02	ci right 1.219047e-02	k: 2103	n:180000
MAP2K4   180000 perm   52 sec   (3450 perm/sec)   p_kst 1.168333e-02   p_cons 3.011111e-03   p_joint 1.694444e-03

Joint ci ratio: 2.443568e-01	ci left: 1.187451e-03	ci right 1.522797e-03	k: 256	n:190000
Cons ci ratio: 1.637998e-01	ci left: 2.759067e-03	ci right 3.256289e-03	k: 570	n:190000
KS ci ratio: 8.255929e-02	ci left: 1.124194e-02	ci right 1.221515e-02	k: 2227	n:190000
MAP2K4   190000 perm   56 sec   (3393 perm/sec)   p_kst 1.172105e-02   p_cons 3.000000e-03   p_joint 1.347368e-03

Joint ci ratio: 2.410994e-01	ci left: 1.160948e-03	ci right 1.483784e-03	k: 263	n:200000
Cons ci ratio: 1.599264e-01	ci left: 2.755442e-03	ci right 3.239141e-03	k: 598	n:200000
KS ci ratio: 8.042139e-02	ci left: 1.126762e-02	ci right 1.221661e-02	k: 2347	n:200000
MAP2K4   200000 perm   60 sec   (3352 perm/sec)   p_kst 1.173500e-02   p_cons 2.990000e-03   p_joint 1.315000e-03

Joint ci ratio: 1.412839e-01	ci left: 3.394270e-03	ci right 3.914816e-03	k: 766	n:210000
Cons ci ratio: 1.428820e-01	ci left: 3.316186e-03	ci right 3.831000e-03	k: 749	n:210000
KS ci ratio: 7.824914e-02	ci left: 1.134719e-02	ci right 1.227589e-02	k: 2479	n:210000
MAP2K4   210000 perm   63 sec   (3310 perm/sec)   p_kst 1.180476e-02   p_cons 3.566667e-03   p_joint 3.647619e-03

Joint ci ratio: 1.417602e-01	ci left: 3.218042e-03	ci right 3.713365e-03	k: 761	n:220000
Cons ci ratio: 1.401092e-01	ci left: 3.296984e-03	ci right 3.798054e-03	k: 779	n:220000
KS ci ratio: 7.645149e-02	ci left: 1.135740e-02	ci right 1.226463e-02	k: 2597	n:220000
MAP2K4   220000 perm   67 sec   (3268 perm/sec)   p_kst 1.180455e-02   p_cons 3.540909e-03   p_joint 3.459091e-03

Joint ci ratio: 1.387873e-01	ci left: 3.216570e-03	ci right 3.700425e-03	k: 794	n:230000
Cons ci ratio: 1.375770e-01	ci left: 3.275342e-03	ci right 3.763389e-03	k: 808	n:230000
KS ci ratio: 7.477231e-02	ci left: 1.136694e-02	ci right 1.225412e-02	k: 2715	n:230000
MAP2K4   230000 perm   71 sec   (3229 perm/sec)   p_kst 1.180435e-02   p_cons 3.513043e-03   p_joint 3.452174e-03

Joint ci ratio: 1.402202e-01	ci left: 3.018184e-03	ci right 3.477275e-03	k: 778	n:240000
Cons ci ratio: 1.341371e-01	ci left: 3.307925e-03	ci right 3.787521e-03	k: 850	n:240000
KS ci ratio: 7.339593e-02	ci left: 1.131452e-02	ci right 1.218066e-02	k: 2818	n:240000
MAP2K4   240000 perm   75 sec   (3186 perm/sec)   p_kst 1.174167e-02   p_cons 3.541667e-03   p_joint 3.241667e-03

Joint ci ratio: 1.577463e-01	ci left: 2.269606e-03	ci right 2.662071e-03	k: 615	n:250000
Cons ci ratio: 1.315357e-01	ci left: 3.307089e-03	ci right 3.776537e-03	k: 884	n:250000
KS ci ratio: 7.179510e-02	ci left: 1.136073e-02	ci right 1.221065e-02	k: 2945	n:250000
MAP2K4   250000 perm   79 sec   (3148 perm/sec)   p_kst 1.178000e-02   p_cons 3.536000e-03   p_joint 2.460000e-03

Joint ci ratio: 1.547605e-01	ci left: 2.271012e-03	ci right 2.655598e-03	k: 639	n:260000
Cons ci ratio: 1.286591e-01	ci left: 3.328735e-03	ci right 3.790133e-03	k: 924	n:260000
KS ci ratio: 7.050389e-02	ci left: 1.133554e-02	ci right 1.216770e-02	k: 3054	n:260000
MAP2K4   260000 perm   84 sec   (3108 perm/sec)   p_kst 1.174615e-02   p_cons 3.553846e-03   p_joint 2.457692e-03

Joint ci ratio: 1.180590e-01	ci left: 3.826507e-03	ci right 4.310160e-03	k: 1097	n:270000
Cons ci ratio: 1.265570e-01	ci left: 3.316596e-03	ci right 3.768238e-03	k: 955	n:270000
KS ci ratio: 6.915838e-02	ci left: 1.135240e-02	ci right 1.216925e-02	k: 3174	n:270000
MAP2K4   270000 perm   88 sec   (3070 perm/sec)   p_kst 1.175556e-02   p_cons 3.537037e-03   p_joint 4.062963e-03

Joint ci ratio: 1.177987e-01	ci left: 3.707163e-03	ci right 4.174625e-03	k: 1102	n:280000
Cons ci ratio: 1.245546e-01	ci left: 3.305382e-03	ci right 3.747849e-03	k: 986	n:280000
KS ci ratio: 6.792881e-02	ci left: 1.135414e-02	ci right 1.215602e-02	k: 3290	n:280000
MAP2K4   280000 perm   92 sec   (3037 perm/sec)   p_kst 1.175000e-02   p_cons 3.521429e-03   p_joint 3.935714e-03

Joint ci ratio: 1.211604e-01	ci left: 3.378581e-03	ci right 3.817638e-03	k: 1042	n:290000
Cons ci ratio: 1.222833e-01	ci left: 3.315052e-03	ci right 3.750135e-03	k: 1023	n:290000
KS ci ratio: 6.684203e-02	ci left: 1.132875e-02	ci right 1.211554e-02	k: 3398	n:290000
MAP2K4   290000 perm   97 sec   (3002 perm/sec)   p_kst 1.171724e-02   p_cons 3.527586e-03   p_joint 3.593103e-03

Joint ci ratio: 1.199053e-01	ci left: 3.337079e-03	ci right 3.765932e-03	k: 1064	n:300000
Cons ci ratio: 1.197362e-01	ci left: 3.346781e-03	ci right 3.776231e-03	k: 1067	n:300000
KS ci ratio: 6.584379e-02	ci left: 1.129203e-02	ci right 1.206411e-02	k: 3502	n:300000
MAP2K4   300000 perm   101 sec   (2969 perm/sec)   p_kst 1.167333e-02   p_cons 3.556667e-03   p_joint 3.546667e-03

Joint ci ratio: 1.232060e-01	ci left: 3.054251e-03	ci right 3.458350e-03	k: 1008	n:310000
Cons ci ratio: 1.176608e-01	ci left: 3.357762e-03	ci right 3.780634e-03	k: 1105	n:310000
KS ci ratio: 6.473480e-02	ci left: 1.131173e-02	ci right 1.207164e-02	k: 3623	n:310000
MAP2K4   310000 perm   106 sec   (2937 perm/sec)   p_kst 1.168710e-02   p_cons 3.564516e-03   p_joint 3.251613e-03

Joint ci ratio: 1.212393e-01	ci left: 3.058778e-03	ci right 3.456552e-03	k: 1041	n:320000
Cons ci ratio: 1.163035e-01	ci left: 3.331702e-03	ci right 3.746119e-03	k: 1131	n:320000
KS ci ratio: 6.385277e-02	ci left: 1.126878e-02	ci right 1.201511e-02	k: 3724	n:320000
MAP2K4   320000 perm   110 sec   (2906 perm/sec)   p_kst 1.163750e-02   p_cons 3.534375e-03   p_joint 3.253125e-03

Joint ci ratio: 1.094403e-01	ci left: 3.660718e-03	ci right 4.087461e-03	k: 1277	n:330000
Cons ci ratio: 1.143987e-01	ci left: 3.342571e-03	ci right 3.751072e-03	k: 1169	n:330000
KS ci ratio: 6.271623e-02	ci left: 1.133291e-02	ci right 1.206964e-02	k: 3860	n:330000
MAP2K4   330000 perm   115 sec   (2876 perm/sec)   p_kst 1.169697e-02   p_cons 3.542424e-03   p_joint 3.869697e-03

Joint ci ratio: 1.088498e-01	ci left: 3.593096e-03	ci right 4.009549e-03	k: 1291	n:340000
Cons ci ratio: 1.129134e-01	ci left: 3.332844e-03	ci right 3.734515e-03	k: 1200	n:340000
KS ci ratio: 6.181850e-02	ci left: 1.132677e-02	ci right 1.205218e-02	k: 3973	n:340000
MAP2K4   340000 perm   120 sec   (2844 perm/sec)   p_kst 1.168529e-02   p_cons 3.529412e-03   p_joint 3.797059e-03

Joint ci ratio: 1.339757e-01	ci left: 2.276494e-03	ci right 2.606116e-03	k: 853	n:350000
Cons ci ratio: 1.108988e-01	ci left: 3.359818e-03	ci right 3.757043e-03	k: 1244	n:350000
KS ci ratio: 6.077048e-02	ci left: 1.139140e-02	ci right 1.210815e-02	k: 4111	n:350000
MAP2K4   350000 perm   124 sec   (2816 perm/sec)   p_kst 1.174571e-02   p_cons 3.554286e-03   p_joint 2.437143e-03

Joint ci ratio: 1.348536e-01	ci left: 2.183723e-03	ci right 2.502150e-03	k: 842	n:360000
Cons ci ratio: 1.095011e-01	ci left: 3.352928e-03	ci right 3.744019e-03	k: 1276	n:360000
KS ci ratio: 6.010400e-02	ci left: 1.132665e-02	ci right 1.203124e-02	k: 4203	n:360000
MAP2K4   360000 perm   129 sec   (2782 perm/sec)   p_kst 1.167500e-02   p_cons 3.544444e-03   p_joint 2.338889e-03

Joint ci ratio: 1.373291e-01	ci left: 2.046373e-03	ci right 2.350697e-03	k: 812	n:370000
Cons ci ratio: 1.083211e-01	ci left: 3.335921e-03	ci right 3.720568e-03	k: 1304	n:370000
KS ci ratio: 5.921539e-02	ci left: 1.135865e-02	ci right 1.205443e-02	k: 4330	n:370000
MAP2K4   370000 perm   134 sec   (2753 perm/sec)   p_kst 1.170270e-02   p_cons 3.524324e-03   p_joint 2.194595e-03

Joint ci ratio: 1.375027e-01	ci left: 1.987434e-03	ci right 2.283397e-03	k: 810	n:380000
Cons ci ratio: 1.069372e-01	ci left: 3.335198e-03	ci right 3.714540e-03	k: 1338	n:380000
KS ci ratio: 5.833197e-02	ci left: 1.140201e-02	ci right 1.208967e-02	k: 4462	n:380000
MAP2K4   380000 perm   140 sec   (2719 perm/sec)   p_kst 1.174211e-02   p_cons 3.521053e-03   p_joint 2.131579e-03

Joint ci ratio: 1.358382e-01	ci left: 1.986003e-03	ci right 2.277883e-03	k: 830	n:390000
Cons ci ratio: 1.056823e-01	ci left: 3.329549e-03	ci right 3.703528e-03	k: 1370	n:390000
KS ci ratio: 5.755034e-02	ci left: 1.141794e-02	ci right 1.209703e-02	k: 4584	n:390000
MAP2K4   390000 perm   145 sec   (2689 perm/sec)   p_kst 1.175385e-02   p_cons 3.512821e-03   p_joint 2.128205e-03

Joint ci ratio: 1.349497e-01	ci left: 1.962920e-03	ci right 2.249369e-03	k: 841	n:400000
Cons ci ratio: 1.042471e-01	ci left: 3.338817e-03	ci right 3.708432e-03	k: 1408	n:400000
KS ci ratio: 5.686658e-02	ci left: 1.140602e-02	ci right 1.207608e-02	k: 4695	n:400000
MAP2K4   400000 perm   150 sec   (2661 perm/sec)   p_kst 1.173750e-02   p_cons 3.520000e-03   p_joint 2.102500e-03

Joint ci ratio: 1.375134e-01	ci left: 1.842003e-03	ci right 2.116331e-03	k: 810	n:410000
Cons ci ratio: 1.029045e-01	ci left: 3.345289e-03	ci right 3.710563e-03	k: 1445	n:410000
KS ci ratio: 5.624808e-02	ci left: 1.137790e-02	ci right 1.203879e-02	k: 4799	n:410000
MAP2K4   410000 perm   156 sec   (2632 perm/sec)   p_kst 1.170488e-02   p_cons 3.524390e-03   p_joint 1.975610e-03

Joint ci ratio: 1.357667e-01	ci left: 1.846437e-03	ci right 2.117650e-03	k: 831	n:420000
Cons ci ratio: 1.015095e-01	ci left: 3.358444e-03	ci right 3.719887e-03	k: 1485	n:420000
KS ci ratio: 5.555770e-02	ci left: 1.138871e-02	ci right 1.204186e-02	k: 4919	n:420000
MAP2K4   420000 perm   161 sec   (2606 perm/sec)   p_kst 1.171190e-02   p_cons 3.535714e-03   p_joint 1.978571e-03

Joint ci ratio: 1.340849e-01	ci left: 1.850685e-03	ci right 2.118887e-03	k: 852	n:430000
Cons ci ratio: 1.005673e-01	ci left: 3.343811e-03	ci right 3.700140e-03	k: 1513	n:430000
KS ci ratio: 5.497497e-02	ci left: 1.136467e-02	ci right 1.200938e-02	k: 5024	n:430000
MAP2K4   430000 perm   167 sec   (2581 perm/sec)   p_kst 1.168372e-02   p_cons 3.518605e-03   p_joint 1.981395e-03

Joint ci ratio: 1.322369e-01	ci left: 1.861353e-03	ci right 2.127091e-03	k: 876	n:440000
Cons ci ratio: 9.919996e-02	ci left: 3.360886e-03	ci right 3.713883e-03	k: 1555	n:440000
KS ci ratio: 5.418621e-02	ci left: 1.143592e-02	ci right 1.207508e-02	k: 5171	n:440000
MAP2K4   440000 perm   172 sec   (2557 perm/sec)   p_kst 1.175227e-02   p_cons 3.534091e-03   p_joint 1.990909e-03

Joint ci ratio: 1.309740e-01	ci left: 1.856524e-03	ci right 2.118844e-03	k: 893	n:450000
Cons ci ratio: 9.816474e-02	ci left: 3.357723e-03	ci right 3.706495e-03	k: 1588	n:450000
KS ci ratio: 5.353748e-02	ci left: 1.145802e-02	ci right 1.209051e-02	k: 5297	n:450000
MAP2K4   450000 perm   178 sec   (2532 perm/sec)   p_kst 1.177111e-02   p_cons 3.528889e-03   p_joint 1.984444e-03

Joint ci ratio: 1.298180e-01	ci left: 1.849812e-03	ci right 2.108699e-03	k: 909	n:460000
Cons ci ratio: 9.719133e-02	ci left: 3.352594e-03	ci right 3.697184e-03	k: 1620	n:460000
KS ci ratio: 5.298569e-02	ci left: 1.144703e-02	ci right 1.207219e-02	k: 5408	n:460000
MAP2K4   460000 perm   183 sec   (2508 perm/sec)   p_kst 1.175652e-02   p_cons 3.521739e-03   p_joint 1.976087e-03

Joint ci ratio: 1.301076e-01	ci left: 1.802217e-03	ci right 2.055050e-03	k: 905	n:470000
Cons ci ratio: 9.604246e-02	ci left: 3.362237e-03	ci right 3.703503e-03	k: 1659	n:470000
KS ci ratio: 5.241700e-02	ci left: 1.145123e-02	ci right 1.206971e-02	k: 5526	n:470000
MAP2K4   470000 perm   189 sec   (2485 perm/sec)   p_kst 1.175745e-02   p_cons 3.529787e-03   p_joint 1.925532e-03

Joint ci ratio: 1.375333e-01	ci left: 1.573362e-03	ci right 1.807718e-03	k: 810	n:480000
Cons ci ratio: 9.490536e-02	ci left: 3.373535e-03	ci right 3.711668e-03	k: 1699	n:480000
KS ci ratio: 5.319312e-02	ci left: 1.088981e-02	ci right 1.148694e-02	k: 5369	n:480000
MAP2K4   480000 perm   195 sec   (2462 perm/sec)   p_kst 1.118542e-02   p_cons 3.539583e-03   p_joint 1.687500e-03

Joint ci ratio: 1.363618e-01	ci left: 1.568845e-03	ci right 1.800376e-03	k: 824	n:490000
Cons ci ratio: 9.383477e-02	ci left: 3.382401e-03	ci right 3.717389e-03	k: 1738	n:490000
KS ci ratio: 5.262751e-02	ci left: 1.090117e-02	ci right 1.149238e-02	k: 5485	n:490000
MAP2K4   490000 perm   201 sec   (2438 perm/sec)   p_kst 1.119388e-02   p_cons 3.546939e-03   p_joint 1.681633e-03

Joint ci ratio: 1.306216e-01	ci left: 1.680534e-03	ci right 1.917299e-03	k: 898	n:500000
Cons ci ratio: 9.279962e-02	ci left: 3.390934e-03	ci right 3.722860e-03	k: 1777	n:500000
KS ci ratio: 5.201857e-02	ci left: 1.093778e-02	ci right 1.152390e-02	k: 5614	n:500000
MAP2K4   500000 perm   207 sec   (2415 perm/sec)   p_kst 1.122800e-02   p_cons 3.554000e-03   p_joint 1.796000e-03

Joint ci ratio: 1.291218e-01	ci left: 1.687421e-03	ci right 1.922218e-03	k: 919	n:510000
Cons ci ratio: 9.212933e-02	ci left: 3.374245e-03	ci right 3.702023e-03	k: 1803	n:510000
KS ci ratio: 5.151652e-02	ci left: 1.093621e-02	ci right 1.151642e-02	k: 5724	n:510000
MAP2K4   510000 perm   213 sec   (2393 perm/sec)   p_kst 1.122353e-02   p_cons 3.535294e-03   p_joint 1.801961e-03

Joint ci ratio: 1.287043e-01	ci left: 1.666136e-03	ci right 1.897164e-03	k: 925	n:520000
Cons ci ratio: 9.144828e-02	ci left: 3.360086e-03	ci right 3.683946e-03	k: 1830	n:520000
KS ci ratio: 5.098457e-02	ci left: 1.095371e-02	ci right 1.152868e-02	k: 5844	n:520000
MAP2K4   520000 perm   219 sec   (2370 perm/sec)   p_kst 1.123846e-02   p_cons 3.519231e-03   p_joint 1.778846e-03

Joint ci ratio: 1.274713e-01	ci left: 1.667574e-03	ci right 1.896418e-03	k: 943	n:530000
Cons ci ratio: 9.058660e-02	ci left: 3.361222e-03	ci right 3.681978e-03	k: 1865	n:530000
KS ci ratio: 5.043884e-02	ci left: 1.098363e-02	ci right 1.155381e-02	k: 5971	n:530000
MAP2K4   530000 perm   226 sec   (2349 perm/sec)   p_kst 1.126604e-02   p_cons 3.518868e-03   p_joint 1.779245e-03

Joint ci ratio: 1.292691e-01	ci left: 1.590087e-03	ci right 1.811611e-03	k: 917	n:540000
Cons ci ratio: 8.974884e-02	ci left: 3.362331e-03	ci right 3.680070e-03	k: 1900	n:540000
KS ci ratio: 4.998492e-02	ci left: 1.097954e-02	ci right 1.154424e-02	k: 6080	n:540000
MAP2K4   540000 perm   232 sec   (2328 perm/sec)   p_kst 1.125926e-02   p_cons 3.518519e-03   p_joint 1.698148e-03

Joint ci ratio: 1.280200e-01	ci left: 1.592850e-03	ci right 1.812452e-03	k: 935	n:550000
Cons ci ratio: 8.891085e-02	ci left: 3.365190e-03	ci right 3.680075e-03	k: 1936	n:550000
KS ci ratio: 4.954303e-02	ci left: 1.097563e-02	ci right 1.153499e-02	k: 6189	n:550000
MAP2K4   550000 perm   238 sec   (2308 perm/sec)   p_kst 1.125273e-02   p_cons 3.520000e-03   p_joint 1.700000e-03

Joint ci ratio: 1.284350e-01	ci left: 1.554034e-03	ci right 1.769032e-03	k: 929	n:560000
Cons ci ratio: 8.816320e-02	ci left: 3.362721e-03	ci right 3.674593e-03	k: 1969	n:560000
KS ci ratio: 4.905756e-02	ci left: 1.099657e-02	ci right 1.155136e-02	k: 6312	n:560000
MAP2K4   560000 perm   245 sec   (2288 perm/sec)   p_kst 1.127143e-02   p_cons 3.516071e-03   p_joint 1.658929e-03

Joint ci ratio: 1.273443e-01	ci left: 1.553942e-03	ci right 1.766964e-03	k: 945	n:570000
Cons ci ratio: 8.752183e-02	ci left: 3.353485e-03	ci right 3.662122e-03	k: 1998	n:570000
KS ci ratio: 4.865494e-02	ci left: 1.098561e-02	ci right 1.153516e-02	k: 6417	n:570000
MAP2K4   570000 perm   251 sec   (2269 perm/sec)   p_kst 1.125789e-02   p_cons 3.505263e-03   p_joint 1.657895e-03

Joint ci ratio: 1.267436e-01	ci left: 1.542174e-03	ci right 1.752510e-03	k: 954	n:580000
Cons ci ratio: 8.668007e-02	ci left: 3.361443e-03	ci right 3.667687e-03	k: 2037	n:580000
KS ci ratio: 4.830329e-02	ci left: 1.095630e-02	ci right 1.150032e-02	k: 6511	n:580000
MAP2K4   580000 perm   258 sec   (2250 perm/sec)   p_kst 1.122586e-02   p_cons 3.512069e-03   p_joint 1.644828e-03

Joint ci ratio: 1.185691e-01	ci left: 1.739489e-03	ci right 1.960364e-03	k: 1090	n:590000
Cons ci ratio: 8.571730e-02	ci left: 3.380757e-03	ci right 3.685167e-03	k: 2083	n:590000
KS ci ratio: 4.789320e-02	ci left: 1.095815e-02	ci right 1.149751e-02	k: 6623	n:590000
MAP2K4   590000 perm   264 sec   (2232 perm/sec)   p_kst 1.122542e-02   p_cons 3.530508e-03   p_joint 1.847458e-03

Joint ci ratio: 1.208678e-01	ci left: 1.644205e-03	ci right 1.857318e-03	k: 1049	n:600000
Cons ci ratio: 8.502661e-02	ci left: 3.379867e-03	ci right 3.681624e-03	k: 2117	n:600000
KS ci ratio: 4.753264e-02	ci left: 1.094184e-02	ci right 1.147623e-02	k: 6724	n:600000
MAP2K4   600000 perm   271 sec   (2214 perm/sec)   p_kst 1.120667e-02   p_cons 3.528333e-03   p_joint 1.748333e-03

Joint ci ratio: 1.195091e-01	ci left: 1.655413e-03	ci right 1.867396e-03	k: 1073	n:610000
Cons ci ratio: 8.425418e-02	ci left: 3.387041e-03	ci right 3.686557e-03	k: 2156	n:610000
KS ci ratio: 4.716963e-02	ci left: 1.093094e-02	ci right 1.146061e-02	k: 6828	n:610000
MAP2K4   610000 perm   278 sec   (2196 perm/sec)   p_kst 1.119344e-02   p_cons 3.534426e-03   p_joint 1.759016e-03

Joint ci ratio: 1.186834e-01	ci left: 1.652185e-03	ci right 1.862191e-03	k: 1088	n:620000
Cons ci ratio: 8.354061e-02	ci left: 3.390837e-03	ci right 3.688025e-03	k: 2193	n:620000
KS ci ratio: 4.679093e-02	ci left: 1.093156e-02	ci right 1.145689e-02	k: 6939	n:620000
MAP2K4   620000 perm   285 sec   (2178 perm/sec)   p_kst 1.119194e-02   p_cons 3.537097e-03   p_joint 1.754839e-03

Joint ci ratio: 1.184131e-01	ci left: 1.633661e-03	ci right 1.840806e-03	k: 1093	n:630000
Cons ci ratio: 8.277043e-02	ci left: 3.400741e-03	ci right 3.695916e-03	k: 2234	n:630000
KS ci ratio: 4.644452e-02	ci left: 1.092120e-02	ci right 1.144204e-02	k: 7043	n:630000
MAP2K4   630000 perm   292 sec   (2160 perm/sec)   p_kst 1.117937e-02   p_cons 3.546032e-03   p_joint 1.734921e-03

Joint ci ratio: 1.177161e-01	ci left: 1.627847e-03	ci right 1.832955e-03	k: 1106	n:640000
Cons ci ratio: 8.207548e-02	ci left: 3.405756e-03	ci right 3.698766e-03	k: 2272	n:640000
KS ci ratio: 4.607311e-02	ci left: 1.092662e-02	ci right 1.144345e-02	k: 7157	n:640000
MAP2K4   640000 perm   299 sec   (2142 perm/sec)   p_kst 1.118281e-02   p_cons 3.550000e-03   p_joint 1.728125e-03

Joint ci ratio: 1.169268e-01	ci left: 1.625203e-03	ci right 1.828510e-03	k: 1121	n:650000
Cons ci ratio: 8.143311e-02	ci left: 3.407612e-03	ci right 3.698378e-03	k: 2308	n:650000
KS ci ratio: 4.569142e-02	ci left: 1.094102e-02	ci right 1.145412e-02	k: 7277	n:650000
MAP2K4   650000 perm   306 sec   (2124 perm/sec)   p_kst 1.119538e-02   p_cons 3.550769e-03   p_joint 1.724615e-03

Joint ci ratio: 1.162556e-01	ci left: 1.619701e-03	ci right 1.821077e-03	k: 1134	n:660000
Cons ci ratio: 8.090954e-02	ci left: 3.400513e-03	ci right 3.688720e-03	k: 2338	n:660000
KS ci ratio: 4.538424e-02	ci left: 1.092353e-02	ci right 1.143229e-02	k: 7376	n:660000
MAP2K4   660000 perm   313 sec   (2107 perm/sec)   p_kst 1.117576e-02   p_cons 3.542424e-03   p_joint 1.718182e-03

Joint ci ratio: 1.153947e-01	ci left: 1.620164e-03	ci right 1.820005e-03	k: 1151	n:670000
Cons ci ratio: 8.034489e-02	ci left: 3.398020e-03	ci right 3.683911e-03	k: 2371	n:670000
KS ci ratio: 4.505271e-02	ci left: 1.092134e-02	ci right 1.142618e-02	k: 7485	n:670000
MAP2K4   670000 perm   321 sec   (2090 perm/sec)   p_kst 1.117164e-02   p_cons 3.538806e-03   p_joint 1.717910e-03

Joint ci ratio: 1.148977e-01	ci left: 1.610620e-03	ci right 1.808370e-03	k: 1161	n:680000
Cons ci ratio: 7.964250e-02	ci left: 3.408579e-03	ci right 3.692735e-03	k: 2413	n:680000
KS ci ratio: 4.471644e-02	ci left: 1.092505e-02	ci right 1.142619e-02	k: 7598	n:680000
MAP2K4   680000 perm   328 sec   (2074 perm/sec)   p_kst 1.117353e-02   p_cons 3.548529e-03   p_joint 1.707353e-03

Joint ci ratio: 1.144071e-01	ci left: 1.601354e-03	ci right 1.797070e-03	k: 1171	n:690000
Cons ci ratio: 7.902281e-02	ci left: 3.413159e-03	ci right 3.695382e-03	k: 2451	n:690000
KS ci ratio: 4.444007e-02	ci left: 1.090286e-02	ci right 1.139981e-02	k: 7693	n:690000
MAP2K4   690000 perm   335 sec   (2058 perm/sec)   p_kst 1.114928e-02   p_cons 3.552174e-03   p_joint 1.697101e-03

Joint ci ratio: 1.149005e-01	ci left: 1.564600e-03	ci right 1.756704e-03	k: 1161	n:700000
Cons ci ratio: 7.855998e-02	ci left: 3.405012e-03	ci right 3.684836e-03	k: 2480	n:700000
KS ci ratio: 4.412009e-02	ci left: 1.090533e-02	ci right 1.139873e-02	k: 7805	n:700000
MAP2K4   700000 perm   343 sec   (2043 perm/sec)   p_kst 1.115000e-02   p_cons 3.542857e-03   p_joint 1.658571e-03

Joint ci ratio: 1.143121e-01	ci left: 1.558980e-03	ci right 1.749348e-03	k: 1173	n:710000
Cons ci ratio: 7.805839e-02	ci left: 3.401241e-03	ci right 3.678890e-03	k: 2512	n:710000
KS ci ratio: 4.381532e-02	ci left: 1.090357e-02	ci right 1.139339e-02	k: 7914	n:710000
MAP2K4   710000 perm   350 sec   (2026 perm/sec)   p_kst 1.114648e-02   p_cons 3.538028e-03   p_joint 1.652113e-03

Joint ci ratio: 1.133980e-01	ci left: 1.562965e-03	ci right 1.752192e-03	k: 1192	n:720000
Cons ci ratio: 7.747468e-02	ci left: 3.405754e-03	ci right 3.681598e-03	k: 2550	n:720000
KS ci ratio: 4.350855e-02	ci left: 1.090599e-02	ci right 1.139240e-02	k: 8026	n:720000
MAP2K4   720000 perm   358 sec   (2011 perm/sec)   p_kst 1.114722e-02   p_cons 3.541667e-03   p_joint 1.655556e-03

Joint ci ratio: 9.287799e-02	ci left: 2.321160e-03	ci right 2.548571e-03	k: 1776	n:730000
Cons ci ratio: 8.057846e-02	ci left: 3.101262e-03	ci right 3.362979e-03	k: 2358	n:730000
KS ci ratio: 4.318937e-02	ci left: 1.091784e-02	ci right 1.140112e-02	k: 8145	n:730000
MAP2K4   730000 perm   366 sec   (1996 perm/sec)   p_kst 1.115753e-02   p_cons 3.230137e-03   p_joint 2.432877e-03

Outputting figure to mutsig2_images.part000000000101/MAP2K4.11_1244_730000_0.011158_0.0032301_0.0024329.png
                gene_name: MAP2K4
               theta_stop: 0.093 
                    nperm: 730000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.0032 
      ci_cons_bounds_left: 0.0031 
     ci_cons_bounds_right: 0.0034 
                  p_joint: 0.0024 
     ci_joint_bounds_left: 0.0023 
    ci_joint_bounds_right: 0.0025 

Current progress: 17 percent done.
MAGEE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.136535e-02	ci left: 2.808214e-01	ci right 2.987012e-01	k: 2897	n:10000
Cons ci ratio: 5.522995e-02	ci left: 3.256490e-01	ci right 3.442472e-01	k: 3349	n:10000
KS ci ratio: 7.409025e-02	ci left: 2.105324e-01	ci right 2.268318e-01	k: 2186	n:10000
MAGEE1   10000 perm   2 sec   (4885 perm/sec)   p_kst 2.186000e-01   p_cons 3.349000e-01   p_joint 2.897000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEE1.8_2878_10000_0.2186_0.3349_0.2897.png
                gene_name: MAGEE1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 19 percent done.
MAG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.516717e-02	ci left: 6.990796e-01	ci right 7.169991e-01	k: 7081	n:10000
Cons ci ratio: 5.396524e-02	ci left: 3.359772e-01	ci right 3.547130e-01	k: 3453	n:10000
KS ci ratio: 1.377760e-02	ci left: 8.838059e-01	ci right 8.961658e-01	k: 8901	n:10000
MAG   10000 perm   2 sec   (5456 perm/sec)   p_kst 8.901000e-01   p_cons 3.453000e-01   p_joint 7.081000e-01

Outputting figure to mutsig2_images.part000000000101/MAG.7_1954_10000_0.8901_0.3453_0.7081.png
                gene_name: MAG
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 21 percent done.
MAGEC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.560300e-02	ci left: 2.543910e-01	ci right 2.717472e-01	k: 2630	n:10000
Cons ci ratio: 1.307207e-01	ci left: 7.708281e-02	ci right 8.796184e-02	k: 824	n:10000
KS ci ratio: 1.903571e-02	ci left: 8.013591e-01	ci right 8.168604e-01	k: 8092	n:10000
MAGEC2   10000 perm   2 sec   (5459 perm/sec)   p_kst 8.092000e-01   p_cons 8.240000e-02   p_joint 2.630000e-01

Joint ci ratio: 4.740908e-02	ci left: 2.486727e-01	ci right 2.607987e-01	k: 5094	n:20000
Cons ci ratio: 9.305140e-02	ci left: 7.769525e-02	ci right 8.532694e-02	k: 1629	n:20000
KS ci ratio: 1.349915e-02	ci left: 8.027749e-01	ci right 8.137353e-01	k: 16166	n:20000
MAGEC2   20000 perm   4 sec   (5075 perm/sec)   p_kst 8.083000e-01   p_cons 8.145000e-02   p_joint 2.547000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEC2.7_1126_20000_0.8083_0.08145_0.2547.png
                gene_name: MAGEC2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 23 percent done.
MAGEC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.620425e-02	ci left: 5.297706e-01	ci right 5.494063e-01	k: 5396	n:10000
KS ci ratio: 2.670404e-02	ci left: 6.737778e-01	ci right 6.921155e-01	k: 6830	n:10000
MAGEC3   10000 perm   2 sec   (5288 perm/sec)   p_kst 6.830000e-01   p_cons 5.396000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAGEC3.7_2331_10000_0.683_0.5396_1.png
                gene_name: MAGEC3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
MALT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.007874e-02	ci left: 2.895409e-01	ci right 3.075765e-01	k: 2985	n:10000
Cons ci ratio: 4.107303e-02	ci left: 4.667689e-01	ci right 4.864447e-01	k: 4766	n:10000
KS ci ratio: 8.472899e-02	ci left: 1.687778e-01	ci right 1.838112e-01	k: 1762	n:10000
MALT1   10000 perm   2 sec   (5008 perm/sec)   p_kst 1.762000e-01   p_cons 4.766000e-01   p_joint 2.985000e-01

Outputting figure to mutsig2_images.part000000000101/MALT1.7_2543_10000_0.1762_0.4766_0.2985.png
                gene_name: MALT1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 26 percent done.
MAN1C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.898176e-01	ci left: 3.700694e-02	ci right 4.486335e-02	k: 408	n:10000
Cons ci ratio: 1.243397e-01	ci left: 8.475243e-02	ci right 9.608748e-02	k: 903	n:10000
KS ci ratio: 1.351440e-01	ci left: 7.233299e-02	ci right 8.291462e-02	k: 775	n:10000
MAN1C1   10000 perm   2 sec   (5214 perm/sec)   p_kst 7.750000e-02   p_cons 9.030000e-02   p_joint 4.080000e-02

Joint ci ratio: 1.162417e-01	ci left: 5.066451e-02	ci right 5.696600e-02	k: 1075	n:20000
Cons ci ratio: 9.186014e-02	ci left: 7.960393e-02	ci right 8.731768e-02	k: 1668	n:20000
KS ci ratio: 9.610131e-02	ci left: 7.309752e-02	ci right 8.052607e-02	k: 1535	n:20000
MAN1C1   20000 perm   4 sec   (4716 perm/sec)   p_kst 7.675000e-02   p_cons 8.340000e-02   p_joint 5.375000e-02

Joint ci ratio: 7.806395e-02	ci left: 7.449868e-02	ci right 8.058343e-02	k: 2325	n:30000
Cons ci ratio: 6.944937e-02	ci left: 9.265620e-02	ci right 9.935560e-02	k: 2879	n:30000
KS ci ratio: 7.942309e-02	ci left: 7.210954e-02	ci right 7.810639e-02	k: 2252	n:30000
MAN1C1   30000 perm   7 sec   (4561 perm/sec)   p_kst 7.506667e-02   p_cons 9.596667e-02   p_joint 7.750000e-02

Outputting figure to mutsig2_images.part000000000101/MAN1C1.7_1941_30000_0.075067_0.095967_0.0775.png
                gene_name: MAN1C1
               theta_stop: 0.079 
                    nperm: 30000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.081 

Current progress: 28 percent done.
MANBA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.386300e-02	ci left: 5.628341e-01	ci right 5.823236e-01	k: 5726	n:10000
Cons ci ratio: 1.661111e-02	ci left: 8.406084e-01	ci right 8.547884e-01	k: 8478	n:10000
KS ci ratio: 5.526715e-02	ci left: 3.253512e-01	ci right 3.439452e-01	k: 3346	n:10000
MANBA   10000 perm   2 sec   (4771 perm/sec)   p_kst 3.346000e-01   p_cons 8.478000e-01   p_joint 5.726000e-01

Outputting figure to mutsig2_images.part000000000101/MANBA.7_2708_10000_0.3346_0.8478_0.5726.png
                gene_name: MANBA
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 30 percent done.
MAP1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.071569e-02	ci left: 7.734721e-01	ci right 7.897635e-01	k: 7817	n:10000
Cons ci ratio: 1.834238e-02	ci left: 8.127337e-01	ci right 8.278793e-01	k: 8204	n:10000
KS ci ratio: 3.036125e-02	ci left: 6.154261e-01	ci right 6.345011e-01	k: 6250	n:10000
MAP1A   10000 perm   3 sec   (3789 perm/sec)   p_kst 6.250000e-01   p_cons 8.204000e-01   p_joint 7.817000e-01

Outputting figure to mutsig2_images.part000000000101/MAP1A.7_8424_10000_0.625_0.8204_0.7817.png
                gene_name: MAP1A
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 32 percent done.
MAEL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.719853e-02	ci left: 6.657201e-01	ci right 6.841779e-01	k: 6750	n:10000
Cons ci ratio: 5.226699e-02	ci left: 3.504847e-01	ci right 3.693970e-01	k: 3599	n:10000
KS ci ratio: 2.414772e-02	ci left: 7.160328e-01	ci right 7.336360e-01	k: 7249	n:10000
MAEL   10000 perm   2 sec   (5257 perm/sec)   p_kst 7.249000e-01   p_cons 3.599000e-01   p_joint 6.750000e-01

Outputting figure to mutsig2_images.part000000000101/MAEL.6_1353_10000_0.7249_0.3599_0.675.png
                gene_name: MAEL
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 34 percent done.
MAGEB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.018021e-02	ci left: 6.182396e-01	ci right 6.372859e-01	k: 6278	n:10000
Cons ci ratio: 4.462512e-03	ci left: 9.849077e-01	ci right 9.894019e-01	k: 9873	n:10000
KS ci ratio: 3.728889e-02	ci left: 5.150563e-01	ci right 5.347292e-01	k: 5249	n:10000
MAGEB1   10000 perm   2 sec   (5876 perm/sec)   p_kst 5.249000e-01   p_cons 9.873000e-01   p_joint 6.278000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEB1.6_1048_10000_0.5249_0.9873_0.6278.png
                gene_name: MAGEB1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 36 percent done.
MAGED1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.678368e-02	ci left: 5.218619e-01	ci right 5.415197e-01	k: 5317	n:10000
Cons ci ratio: 6.784775e-03	ci left: 9.675208e-01	ci right 9.742012e-01	k: 9710	n:10000
KS ci ratio: 5.142700e-02	ci left: 3.579408e-01	ci right 3.769365e-01	k: 3674	n:10000
MAGED1   10000 perm   2 sec   (5260 perm/sec)   p_kst 3.674000e-01   p_cons 9.710000e-01   p_joint 5.317000e-01

Outputting figure to mutsig2_images.part000000000101/MAGED1.6_2553_10000_0.3674_0.971_0.5317.png
                gene_name: MAGED1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 38 percent done.
MAGEL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.900626e-02	ci left: 2.970746e-01	ci right 3.152384e-01	k: 3061	n:10000
Cons ci ratio: 2.244472e-02	ci left: 7.445255e-01	ci right 7.615269e-01	k: 7531	n:10000
KS ci ratio: 1.501555e-01	ci left: 5.899102e-02	ci right 6.866498e-02	k: 637	n:10000
MAGEL2   10000 perm   2 sec   (5230 perm/sec)   p_kst 6.370000e-02   p_cons 7.531000e-01   p_joint 3.061000e-01

Joint ci ratio: 5.549718e-02	ci left: 1.940795e-01	ci right 2.052079e-01	k: 3992	n:20000
Cons ci ratio: 1.694055e-02	ci left: 7.218254e-01	ci right 7.342083e-01	k: 14561	n:20000
KS ci ratio: 1.047818e-01	ci left: 6.196321e-02	ci right 6.886379e-02	k: 1307	n:20000
MAGEL2   20000 perm   4 sec   (4702 perm/sec)   p_kst 6.535000e-02   p_cons 7.280500e-01   p_joint 1.996000e-01

Joint ci ratio: 5.032292e-02	ci left: 1.639830e-01	ci right 1.724814e-01	k: 5046	n:30000
Cons ci ratio: 1.388263e-02	ci left: 7.215180e-01	ci right 7.316381e-01	k: 21798	n:30000
KS ci ratio: 8.787778e-02	ci left: 5.946019e-02	ci right 6.495830e-02	k: 1865	n:30000
MAGEL2   30000 perm   7 sec   (4502 perm/sec)   p_kst 6.216667e-02   p_cons 7.266000e-01   p_joint 1.682000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEL2.6_3754_30000_0.062167_0.7266_0.1682.png
                gene_name: MAGEL2
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 40 percent done.
MAGI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.505034e-01	ci left: 2.090184e-02	ci right 2.697984e-02	k: 238	n:10000
Cons ci ratio: 9.755860e-02	ci left: 1.321775e-01	ci right 1.458335e-01	k: 1389	n:10000
KS ci ratio: 2.232741e-01	ci left: 2.655489e-02	ci right 3.332262e-02	k: 298	n:10000
MAGI3   10000 perm   2 sec   (4630 perm/sec)   p_kst 2.980000e-02   p_cons 1.389000e-01   p_joint 2.380000e-02

Joint ci ratio: 1.076732e-01	ci left: 5.879414e-02	ci right 6.553384e-02	k: 1242	n:20000
Cons ci ratio: 6.811993e-02	ci left: 1.371898e-01	ci right 1.469145e-01	k: 2840	n:20000
KS ci ratio: 1.547106e-01	ci left: 2.868948e-02	ci right 3.354810e-02	k: 621	n:20000
MAGI3   20000 perm   5 sec   (4058 perm/sec)   p_kst 3.105000e-02   p_cons 1.420000e-01   p_joint 6.210000e-02

Joint ci ratio: 9.861510e-02	ci left: 4.756077e-02	ci right 5.252683e-02	k: 1500	n:30000
Cons ci ratio: 5.482399e-02	ci left: 1.415937e-01	ci right 1.496084e-01	k: 4367	n:30000
KS ci ratio: 1.235472e-01	ci left: 3.045747e-02	ci right 3.450040e-02	k: 973	n:30000
MAGI3   30000 perm   8 sec   (3933 perm/sec)   p_kst 3.243333e-02   p_cons 1.455667e-01   p_joint 5.000000e-02

Joint ci ratio: 8.058611e-02	ci left: 5.359493e-02	ci right 5.811982e-02	k: 2233	n:40000
Cons ci ratio: 4.551141e-02	ci left: 1.528777e-01	ci right 1.600223e-01	k: 6257	n:40000
KS ci ratio: 1.073233e-01	ci left: 3.054025e-02	ci right 3.402808e-02	k: 1290	n:40000
MAGI3   40000 perm   10 sec   (3847 perm/sec)   p_kst 3.225000e-02   p_cons 1.564250e-01   p_joint 5.582500e-02

Joint ci ratio: 7.454939e-02	ci left: 5.044321e-02	ci right 5.436896e-02	k: 2619	n:50000
Cons ci ratio: 4.328770e-02	ci left: 1.378415e-01	ci right 1.439602e-01	k: 7044	n:50000
KS ci ratio: 9.463061e-02	ci left: 3.160770e-02	ci right 3.476680e-02	k: 1658	n:50000
MAGI3   50000 perm   13 sec   (3776 perm/sec)   p_kst 3.316000e-02   p_cons 1.408800e-01   p_joint 5.238000e-02

Outputting figure to mutsig2_images.part000000000101/MAGI3.6_4584_50000_0.03316_0.14088_0.05238.png
                gene_name: MAGI3
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.054 

Current progress: 42 percent done.
MAN2C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.565491e-02	ci left: 6.910118e-01	ci right 7.090715e-01	k: 7001	n:10000
Cons ci ratio: 4.286032e-02	ci left: 4.456034e-01	ci right 4.652226e-01	k: 4554	n:10000
KS ci ratio: 2.405090e-02	ci left: 7.176482e-01	ci right 7.352197e-01	k: 7265	n:10000
MAN2C1   10000 perm   2 sec   (4434 perm/sec)   p_kst 7.265000e-01   p_cons 4.554000e-01   p_joint 7.001000e-01

Outputting figure to mutsig2_images.part000000000101/MAN2C1.6_3227_10000_0.7265_0.4554_0.7001.png
                gene_name: MAN2C1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 43 percent done.
MAP2K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.255649e-02	ci left: 9.011385e-01	ci right 9.126232e-01	k: 9070	n:10000
Cons ci ratio: 2.690152e-02	ci left: 6.705543e-01	ci right 6.889408e-01	k: 6798	n:10000
KS ci ratio: 1.904187e-02	ci left: 8.012576e-01	ci right 8.167620e-01	k: 8091	n:10000
MAP2K3   10000 perm   2 sec   (5481 perm/sec)   p_kst 8.091000e-01   p_cons 6.798000e-01   p_joint 9.070000e-01

Outputting figure to mutsig2_images.part000000000101/MAP2K3.6_1092_10000_0.8091_0.6798_0.907.png
                gene_name: MAP2K3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 45 percent done.
MAGED2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.018633e-02	ci left: 4.776581e-01	ci right 4.973492e-01	k: 4875	n:10000
Cons ci ratio: 7.025640e-02	ci left: 2.289892e-01	ci right 2.457640e-01	k: 2373	n:10000
KS ci ratio: 1.373534e-02	ci left: 8.844205e-01	ci right 8.967510e-01	k: 8907	n:10000
MAGED2   10000 perm   2 sec   (6081 perm/sec)   p_kst 8.907000e-01   p_cons 2.373000e-01   p_joint 4.875000e-01

Outputting figure to mutsig2_images.part000000000101/MAGED2.5_1865_10000_0.8907_0.2373_0.4875.png
                gene_name: MAGED2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 47 percent done.
MAN1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.158161e-02	ci left: 2.223737e-01	ci right 2.389835e-01	k: 2306	n:10000
Cons ci ratio: 1.469819e-01	ci left: 6.150035e-02	ci right 7.135407e-02	k: 663	n:10000
KS ci ratio: 6.161973e-02	ci left: 2.791374e-01	ci right 2.969862e-01	k: 2880	n:10000
MAN1A1   10000 perm   2 sec   (5122 perm/sec)   p_kst 2.880000e-01   p_cons 6.630000e-02   p_joint 2.306000e-01

Joint ci ratio: 7.019251e-02	ci left: 1.301446e-01	ci right 1.396618e-01	k: 2697	n:20000
Cons ci ratio: 1.054737e-01	ci left: 6.118290e-02	ci right 6.804434e-02	k: 1291	n:20000
KS ci ratio: 4.332364e-02	ci left: 2.841146e-01	ci right 2.967464e-01	k: 5808	n:20000
MAN1A1   20000 perm   4 sec   (4707 perm/sec)   p_kst 2.904000e-01   p_cons 6.455000e-02   p_joint 1.348500e-01

Joint ci ratio: 5.300447e-02	ci left: 1.500974e-01	ci right 1.583030e-01	k: 4625	n:30000
Cons ci ratio: 8.733012e-02	ci left: 6.017846e-02	ci right 6.570655e-02	k: 1887	n:30000
KS ci ratio: 3.520136e-02	ci left: 2.872896e-01	ci right 2.976173e-01	k: 8773	n:30000
MAN1A1   30000 perm   7 sec   (4552 perm/sec)   p_kst 2.924333e-01   p_cons 6.290000e-02   p_joint 1.541667e-01

Outputting figure to mutsig2_images.part000000000101/MAN1A1.5_2010_30000_0.29243_0.0629_0.15417.png
                gene_name: MAN1A1
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 49 percent done.
MAN2A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.961172e-02	ci left: 4.848535e-01	ci right 5.045496e-01	k: 4947	n:10000
KS ci ratio: 1.086698e-02	ci left: 9.234805e-01	ci right 9.336681e-01	k: 9287	n:10000
MAN2A2   10000 perm   2 sec   (4750 perm/sec)   p_kst 9.287000e-01   p_cons 4.947000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAN2A2.5_3541_10000_0.9287_0.4947_1.png
                gene_name: MAN2A2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
MAN2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.536256e-02	ci left: 8.600854e-01	ci right 8.735001e-01	k: 8669	n:10000
Cons ci ratio: 1.423087e-02	ci left: 8.771523e-01	ci right 8.898233e-01	k: 8836	n:10000
KS ci ratio: 1.961910e-02	ci left: 7.917190e-01	ci right 8.075061e-01	k: 7997	n:10000
MAN2B1   10000 perm   2 sec   (5118 perm/sec)   p_kst 7.997000e-01   p_cons 8.836000e-01   p_joint 8.669000e-01

Outputting figure to mutsig2_images.part000000000101/MAN2B1.5_3132_10000_0.7997_0.8836_0.8669.png
                gene_name: MAN2B1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 53 percent done.
MAEA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.603451e-02	ci left: 8.496789e-01	ci right 8.635127e-01	k: 8567	n:10000
KS ci ratio: 3.902988e-02	ci left: 4.922509e-01	ci right 5.119479e-01	k: 5021	n:10000
MAEA   10000 perm   2 sec   (6520 perm/sec)   p_kst 5.021000e-01   p_cons 8.567000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAEA.4_1227_10000_0.5021_0.8567_1.png
                gene_name: MAEA
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
MAGEA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.925331e-01	ci left: 3.595770e-02	ci right 4.371330e-02	k: 397	n:10000
Cons ci ratio: 2.510420e-01	ci left: 2.080800e-02	ci right 2.687375e-02	k: 237	n:10000
KS ci ratio: 5.464026e-02	ci left: 3.304153e-01	ci right 3.490782e-01	k: 3397	n:10000
MAGEA12   10000 perm   2 sec   (6253 perm/sec)   p_kst 3.397000e-01   p_cons 2.370000e-02   p_joint 3.970000e-02

Joint ci ratio: 1.279133e-01	ci left: 4.197441e-02	ci right 4.775885e-02	k: 896	n:20000
Cons ci ratio: 1.773270e-01	ci left: 2.173197e-02	ci right 2.600799e-02	k: 476	n:20000
KS ci ratio: 3.915448e-02	ci left: 3.272640e-01	ci right 3.403843e-01	k: 6676	n:20000
MAGEA12   20000 perm   4 sec   (5602 perm/sec)   p_kst 3.338000e-01   p_cons 2.380000e-02   p_joint 4.480000e-02

Joint ci ratio: 1.144466e-01	ci left: 3.547563e-02	ci right 3.981450e-02	k: 1128	n:30000
Cons ci ratio: 1.455715e-01	ci left: 2.187970e-02	ci right 2.534674e-02	k: 707	n:30000
KS ci ratio: 3.210051e-02	ci left: 3.266708e-01	ci right 3.373617e-01	k: 9960	n:30000
MAGEA12   30000 perm   6 sec   (5308 perm/sec)   p_kst 3.320000e-01   p_cons 2.356667e-02   p_joint 3.760000e-02

Joint ci ratio: 1.006645e-01	ci left: 3.468345e-02	ci right 3.838423e-02	k: 1460	n:40000
Cons ci ratio: 1.247889e-01	ci left: 2.257075e-02	ci right 2.559888e-02	k: 962	n:40000
KS ci ratio: 2.786003e-02	ci left: 3.264382e-01	ci right 3.356863e-01	k: 13242	n:40000
MAGEA12   40000 perm   8 sec   (5138 perm/sec)   p_kst 3.310500e-01   p_cons 2.405000e-02   p_joint 3.650000e-02

Joint ci ratio: 8.374583e-02	ci left: 4.021923e-02	ci right 4.375420e-02	k: 2098	n:50000
Cons ci ratio: 1.119369e-01	ci left: 2.259837e-02	ci right 2.529729e-02	k: 1196	n:50000
KS ci ratio: 2.482763e-02	ci left: 3.285499e-01	ci right 3.368296e-01	k: 16634	n:50000
MAGEA12   50000 perm   10 sec   (5001 perm/sec)   p_kst 3.326800e-01   p_cons 2.392000e-02   p_joint 4.196000e-02

Joint ci ratio: 8.337440e-02	ci left: 3.404990e-02	ci right 3.702858e-02	k: 2131	n:60000
Cons ci ratio: 1.011570e-01	ci left: 2.318018e-02	ci right 2.566612e-02	k: 1464	n:60000
KS ci ratio: 2.271300e-02	ci left: 3.279658e-01	ci right 3.355171e-01	k: 19904	n:60000
MAGEA12   60000 perm   12 sec   (4883 perm/sec)   p_kst 3.317333e-01   p_cons 2.440000e-02   p_joint 3.551667e-02

Joint ci ratio: 8.843868e-02	ci left: 2.609133e-02	ci right 2.851950e-02	k: 1910	n:70000
Cons ci ratio: 9.323941e-02	ci left: 2.347904e-02	ci right 2.578916e-02	k: 1723	n:70000
KS ci ratio: 2.104747e-02	ci left: 3.278416e-01	ci right 3.348295e-01	k: 23193	n:70000
MAGEA12   70000 perm   15 sec   (4774 perm/sec)   p_kst 3.313286e-01   p_cons 2.461429e-02   p_joint 2.728571e-02

Outputting figure to mutsig2_images.part000000000101/MAGEA12.4_949_70000_0.33133_0.024614_0.027286.png
                gene_name: MAGEA12
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.029 

Current progress: 57 percent done.
MAGEB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.967418e-02	ci left: 7.908060e-01	ci right 8.066196e-01	k: 7988	n:10000
Cons ci ratio: 4.140372e-02	ci left: 4.627741e-01	ci right 4.824419e-01	k: 4726	n:10000
KS ci ratio: 2.772066e-02	ci left: 6.572627e-01	ci right 6.758402e-01	k: 6666	n:10000
MAGEB4   10000 perm   2 sec   (6268 perm/sec)   p_kst 6.666000e-01   p_cons 4.726000e-01   p_joint 7.988000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEB4.4_1045_10000_0.6666_0.4726_0.7988.png
                gene_name: MAGEB4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 58 percent done.
MAK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.259546e-01	ci left: 8.271234e-02	ci right 9.392883e-02	k: 882	n:10000
Cons ci ratio: 8.327350e-03	ci left: 9.527344e-01	ci right 9.607967e-01	k: 9569	n:10000
KS ci ratio: 1.789177e-01	ci left: 4.168977e-02	ci right 4.997740e-02	k: 457	n:10000
MAK   10000 perm   2 sec   (5397 perm/sec)   p_kst 4.570000e-02   p_cons 9.569000e-01   p_joint 8.820000e-02

Joint ci ratio: 1.027783e-01	ci left: 6.430502e-02	ci right 7.132127e-02	k: 1355	n:20000
Cons ci ratio: 5.690381e-03	ci left: 9.567786e-01	ci right 9.622868e-01	k: 19192	n:20000
KS ci ratio: 1.267345e-01	ci left: 4.275002e-02	ci right 4.858299e-02	k: 912	n:20000
MAK   20000 perm   4 sec   (4894 perm/sec)   p_kst 4.560000e-02   p_cons 9.596000e-01   p_joint 6.775000e-02

Joint ci ratio: 8.343572e-02	ci left: 6.566681e-02	ci right 7.141709e-02	k: 2055	n:30000
Cons ci ratio: 4.822170e-03	ci left: 9.542330e-01	ci right 9.588780e-01	k: 28698	n:30000
KS ci ratio: 1.028705e-01	ci left: 4.378695e-02	ci right 4.856811e-02	k: 1384	n:30000
MAK   30000 perm   6 sec   (4730 perm/sec)   p_kst 4.613333e-02   p_cons 9.566000e-01   p_joint 6.850000e-02

Joint ci ratio: 7.200891e-02	ci left: 6.648588e-02	ci right 7.147691e-02	k: 2758	n:40000
Cons ci ratio: 4.178304e-03	ci left: 9.545062e-01	ci right 9.585272e-01	k: 38262	n:40000
KS ci ratio: 8.933422e-02	ci left: 4.386974e-02	ci right 4.799651e-02	k: 1836	n:40000
MAK   40000 perm   9 sec   (4609 perm/sec)   p_kst 4.590000e-02   p_cons 9.565500e-01   p_joint 6.895000e-02

Outputting figure to mutsig2_images.part000000000101/MAK.4_1924_40000_0.0459_0.95655_0.06895.png
                gene_name: MAK
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.071 

Current progress: 60 percent done.
MANSC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.586988e-01	ci left: 5.292045e-02	ci right 6.213942e-02	k: 574	n:10000
Cons ci ratio: 6.696667e-02	ci left: 2.465785e-01	ci right 2.637644e-01	k: 2551	n:10000
KS ci ratio: 1.719499e-01	ci left: 4.513859e-02	ci right 5.372632e-02	k: 493	n:10000
MANSC1   10000 perm   2 sec   (5536 perm/sec)   p_kst 4.930000e-02   p_cons 2.551000e-01   p_joint 5.740000e-02

Joint ci ratio: 1.515943e-01	ci left: 2.989297e-02	ci right 3.484421e-02	k: 646	n:20000
Cons ci ratio: 4.685374e-02	ci left: 2.531374e-01	ci right 2.653327e-01	k: 5184	n:20000
KS ci ratio: 1.225055e-01	ci left: 4.570923e-02	ci right 5.172285e-02	k: 973	n:20000
MANSC1   20000 perm   4 sec   (5036 perm/sec)   p_kst 4.865000e-02   p_cons 2.592000e-01   p_joint 3.230000e-02

Joint ci ratio: 1.067679e-01	ci left: 4.069970e-02	ci right 4.532266e-02	k: 1289	n:30000
Cons ci ratio: 3.829423e-02	ci left: 2.538839e-01	ci right 2.638295e-01	k: 7765	n:30000
KS ci ratio: 1.010481e-01	ci left: 4.534800e-02	ci right 5.020672e-02	k: 1432	n:30000
MANSC1   30000 perm   6 sec   (4872 perm/sec)   p_kst 4.773333e-02   p_cons 2.588333e-01   p_joint 4.296667e-02

Joint ci ratio: 8.890390e-02	ci left: 4.428569e-02	ci right 4.843049e-02	k: 1853	n:40000
Cons ci ratio: 3.429790e-02	ci left: 2.419346e-01	ci right 2.504023e-01	k: 9846	n:40000
KS ci ratio: 8.738255e-02	ci left: 4.580311e-02	ci right 5.001284e-02	k: 1915	n:40000
MANSC1   40000 perm   8 sec   (4745 perm/sec)   p_kst 4.787500e-02   p_cons 2.461500e-01   p_joint 4.632500e-02

Outputting figure to mutsig2_images.part000000000101/MANSC1.4_1308_40000_0.047875_0.24615_0.046325.png
                gene_name: MANSC1
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.048 

Current progress: 62 percent done.
MAP1S
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.712277e-02	ci left: 8.324623e-01	ci right 8.469393e-01	k: 8398	n:10000
Cons ci ratio: 2.425064e-02	ci left: 7.143166e-01	ci right 7.319532e-01	k: 7232	n:10000
KS ci ratio: 2.927630e-02	ci left: 6.324129e-01	ci right 6.513044e-01	k: 6419	n:10000
MAP1S   10000 perm   2 sec   (4991 perm/sec)   p_kst 6.419000e-01   p_cons 7.232000e-01   p_joint 8.398000e-01

Outputting figure to mutsig2_images.part000000000101/MAP1S.4_3208_10000_0.6419_0.7232_0.8398.png
                gene_name: MAP1S
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 64 percent done.
MAP2K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.977475e-02	ci left: 2.314584e-01	ci right 2.482934e-01	k: 2398	n:10000
Cons ci ratio: 6.216491e-02	ci left: 2.755719e-01	ci right 2.933539e-01	k: 2844	n:10000
KS ci ratio: 9.198086e-02	ci left: 1.465847e-01	ci right 1.608177e-01	k: 1536	n:10000
MAP2K1   10000 perm   2 sec   (6141 perm/sec)   p_kst 1.536000e-01   p_cons 2.844000e-01   p_joint 2.398000e-01

Outputting figure to mutsig2_images.part000000000101/MAP2K1.4_1226_10000_0.1536_0.2844_0.2398.png
                gene_name: MAP2K1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 66 percent done.
MAP2K5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.335591e-02	ci left: 7.292631e-01	ci right 7.465981e-01	k: 7380	n:10000
Cons ci ratio: 3.800521e-02	ci left: 5.055515e-01	ci right 5.252395e-01	k: 5154	n:10000
KS ci ratio: 3.792162e-02	ci left: 5.066519e-01	ci right 5.263385e-01	k: 5165	n:10000
MAP2K5   10000 perm   2 sec   (6137 perm/sec)   p_kst 5.165000e-01   p_cons 5.154000e-01   p_joint 7.380000e-01

Outputting figure to mutsig2_images.part000000000101/MAP2K5.4_1435_10000_0.5165_0.5154_0.738.png
                gene_name: MAP2K5
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 68 percent done.
MAGEA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.496038e-02	ci left: 7.025094e-01	ci right 7.203673e-01	k: 7115	n:10000
Cons ci ratio: 2.605256e-02	ci left: 6.844592e-01	ci right 7.026280e-01	k: 6936	n:10000
KS ci ratio: 4.600981e-02	ci left: 4.107992e-01	ci right 4.302471e-01	k: 4205	n:10000
MAGEA10   10000 perm   2 sec   (6030 perm/sec)   p_kst 4.205000e-01   p_cons 6.936000e-01   p_joint 7.115000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEA10.3_1114_10000_0.4205_0.6936_0.7115.png
                gene_name: MAGEA10
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 70 percent done.
MAGEA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.486017e-02	ci left: 3.286278e-01	ci right 3.472667e-01	k: 3379	n:10000
Cons ci ratio: 8.624746e-02	ci left: 1.637654e-01	ci right 1.786266e-01	k: 1711	n:10000
KS ci ratio: 2.709942e-02	ci left: 6.673314e-01	ci right 6.857657e-01	k: 6766	n:10000
MAGEA11   10000 perm   2 sec   (6062 perm/sec)   p_kst 6.766000e-01   p_cons 1.711000e-01   p_joint 3.379000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEA11.3_1319_10000_0.6766_0.1711_0.3379.png
                gene_name: MAGEA11
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 72 percent done.
MAGEA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.219629e-02	ci left: 9.060712e-01	ci right 9.172877e-01	k: 9118	n:10000
Cons ci ratio: 8.113531e-03	ci left: 9.549276e-01	ci right 9.628022e-01	k: 9590	n:10000
KS ci ratio: 3.059483e-02	ci left: 6.118092e-01	ci right 6.309201e-01	k: 6214	n:10000
MAGEA6   10000 perm   2 sec   (6092 perm/sec)   p_kst 6.214000e-01   p_cons 9.590000e-01   p_joint 9.118000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEA6.3_949_10000_0.6214_0.959_0.9118.png
                gene_name: MAGEA6
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 74 percent done.
MAGEB18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.501416e-02	ci left: 4.214646e-01	ci right 4.409755e-01	k: 4312	n:10000
Cons ci ratio: 5.695986e-02	ci left: 3.121506e-01	ci right 3.305536e-01	k: 3213	n:10000
KS ci ratio: 4.771208e-02	ci left: 3.932662e-01	ci right 4.125904e-01	k: 4029	n:10000
MAGEB18   10000 perm   2 sec   (6118 perm/sec)   p_kst 4.029000e-01   p_cons 3.213000e-01   p_joint 4.312000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEB18.3_1036_10000_0.4029_0.3213_0.4312.png
                gene_name: MAGEB18
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 75 percent done.
MAGEB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.450658e-02	ci left: 3.315077e-01	ci right 3.501851e-01	k: 3408	n:10000
Cons ci ratio: 5.788665e-02	ci left: 3.052063e-01	ci right 3.235020e-01	k: 3143	n:10000
KS ci ratio: 7.939167e-02	ci left: 1.881605e-01	ci right 2.038170e-01	k: 1959	n:10000
MAGEB3   10000 perm   2 sec   (6196 perm/sec)   p_kst 1.959000e-01   p_cons 3.143000e-01   p_joint 3.408000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEB3.3_1045_10000_0.1959_0.3143_0.3408.png
                gene_name: MAGEB3
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 77 percent done.
MAML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.242548e-02	ci left: 2.738884e-01	ci right 2.916384e-01	k: 2827	n:10000
Cons ci ratio: 4.589673e-02	ci left: 4.119951e-01	ci right 4.314506e-01	k: 4217	n:10000
KS ci ratio: 9.219358e-02	ci left: 1.459962e-01	ci right 1.602065e-01	k: 1530	n:10000
MAML1   10000 perm   2 sec   (5720 perm/sec)   p_kst 1.530000e-01   p_cons 4.217000e-01   p_joint 2.827000e-01

Outputting figure to mutsig2_images.part000000000101/MAML1.3_3071_10000_0.153_0.4217_0.2827.png
                gene_name: MAML1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 79 percent done.
MAML2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.816456e-02	ci left: 6.501168e-01	ci right 6.687903e-01	k: 6595	n:10000
Cons ci ratio: 4.253351e-02	ci left: 4.493959e-01	ci right 4.690278e-01	k: 4592	n:10000
KS ci ratio: 3.959588e-02	ci left: 4.850534e-01	ci right 5.047496e-01	k: 4949	n:10000
MAML2   10000 perm   2 sec   (5179 perm/sec)   p_kst 4.949000e-01   p_cons 4.592000e-01   p_joint 6.595000e-01

Outputting figure to mutsig2_images.part000000000101/MAML2.3_3491_10000_0.4949_0.4592_0.6595.png
                gene_name: MAML2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 81 percent done.
MAOA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.920191e-02	ci left: 7.986185e-01	ci right 8.142026e-01	k: 8065	n:10000
Cons ci ratio: 2.751516e-02	ci left: 6.605848e-01	ci right 6.791161e-01	k: 6699	n:10000
KS ci ratio: 3.465118e-02	ci left: 5.515074e-01	ci right 5.710568e-01	k: 5613	n:10000
MAOA   10000 perm   2 sec   (5827 perm/sec)   p_kst 5.613000e-01   p_cons 6.699000e-01   p_joint 8.065000e-01

Outputting figure to mutsig2_images.part000000000101/MAOA.3_1644_10000_0.5613_0.6699_0.8065.png
                gene_name: MAOA
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 83 percent done.
MAGEA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.348876e-02	ci left: 7.270405e-01	ci right 7.444219e-01	k: 7358	n:10000
KS ci ratio: 1.816794e-02	ci left: 8.155790e-01	ci right 8.306323e-01	k: 8232	n:10000
MAGEA4   10000 perm   2 sec   (6415 perm/sec)   p_kst 8.232000e-01   p_cons 7.358000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAGEA4.2_958_10000_0.8232_0.7358_1.png
                gene_name: MAGEA4
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
MAGEA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.480377e-02	ci left: 4.237578e-01	ci right 4.432810e-01	k: 4335	n:10000
Cons ci ratio: 1.630765e-02	ci left: 8.453973e-01	ci right 8.593967e-01	k: 8525	n:10000
KS ci ratio: 7.225356e-02	ci left: 2.191164e-01	ci right 2.356427e-01	k: 2273	n:10000
MAGEA8   10000 perm   2 sec   (6288 perm/sec)   p_kst 2.273000e-01   p_cons 8.525000e-01   p_joint 4.335000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEA8.2_961_10000_0.2273_0.8525_0.4335.png
                gene_name: MAGEA8
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 87 percent done.
MAGEB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.461249e-02	ci left: 1.691711e-01	ci right 1.842178e-01	k: 1766	n:10000
Cons ci ratio: 9.028637e-02	ci left: 1.513922e-01	ci right 1.658072e-01	k: 1585	n:10000
KS ci ratio: 3.802042e-02	ci left: 5.053515e-01	ci right 5.250397e-01	k: 5152	n:10000
MAGEB2   10000 perm   2 sec   (6596 perm/sec)   p_kst 5.152000e-01   p_cons 1.585000e-01   p_joint 1.766000e-01

Outputting figure to mutsig2_images.part000000000101/MAGEB2.2_964_10000_0.5152_0.1585_0.1766.png
                gene_name: MAGEB2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 89 percent done.
MAGEE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.179607e-02	ci left: 4.580809e-01	ci right 4.777378e-01	k: 4679	n:10000
KS ci ratio: 4.063929e-02	ci left: 4.720631e-01	ci right 4.917475e-01	k: 4819	n:10000
MAGEE2   10000 perm   2 sec   (6207 perm/sec)   p_kst 4.819000e-01   p_cons 4.679000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAGEE2.2_1576_10000_0.4819_0.4679_1.png
                gene_name: MAGEE2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
MAGT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.540245e-02	ci left: 8.594729e-01	ci right 8.729130e-01	k: 8663	n:10000
KS ci ratio: 1.107050e-02	ci left: 9.209006e-01	ci right 9.312496e-01	k: 9262	n:10000
MAGT1   10000 perm   2 sec   (6388 perm/sec)   p_kst 9.262000e-01   p_cons 8.663000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000101/MAGT1.2_1144_10000_0.9262_0.8663_1.png
                gene_name: MAGT1
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
MAMDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.628658e-02	ci left: 2.504348e-01	ci right 2.677057e-01	k: 2590	n:10000
Cons ci ratio: 4.017829e-02	ci left: 4.777580e-01	ci right 4.974492e-01	k: 4876	n:10000
KS ci ratio: 1.547402e-01	ci left: 5.561671e-02	ci right 6.504144e-02	k: 602	n:10000
MAMDC2   10000 perm   2 sec   (5930 perm/sec)   p_kst 6.020000e-02   p_cons 4.876000e-01   p_joint 2.590000e-01

Joint ci ratio: 2.263562e-02	ci left: 5.930711e-01	ci right 6.066999e-01	k: 11998	n:20000
Cons ci ratio: 2.771096e-02	ci left: 4.931459e-01	ci right 5.070541e-01	k: 10002	n:20000
KS ci ratio: 1.070320e-01	ci left: 5.947650e-02	ci right 6.625128e-02	k: 1256	n:20000
MAMDC2   20000 perm   4 sec   (5231 perm/sec)   p_kst 6.280000e-02   p_cons 5.001000e-01   p_joint 5.999000e-01

Joint ci ratio: 1.852462e-02	ci left: 5.932276e-01	ci right 6.043532e-01	k: 17964	n:30000
Cons ci ratio: 2.305128e-02	ci left: 4.851275e-01	ci right 4.964743e-01	k: 14724	n:30000
KS ci ratio: 8.742900e-02	ci left: 6.004786e-02	ci right 6.557051e-02	k: 1883	n:30000
MAMDC2   30000 perm   6 sec   (4973 perm/sec)   p_kst 6.276667e-02   p_cons 4.908000e-01   p_joint 5.988000e-01

Outputting figure to mutsig2_images.part000000000101/MAMDC2.2_2117_30000_0.062767_0.4908_0.5988.png
                gene_name: MAMDC2
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 94 percent done.
MAN1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.661964e-03	ci left: 9.380680e-01	ci right 9.472720e-01	k: 9428	n:10000
Cons ci ratio: 3.721421e-02	ci left: 5.160570e-01	ci right 5.357279e-01	k: 5259	n:10000
KS ci ratio: 3.966721e-02	ci left: 4.841538e-01	ci right 5.038497e-01	k: 4940	n:10000
MAN1A2   10000 perm   2 sec   (4607 perm/sec)   p_kst 4.940000e-01   p_cons 5.259000e-01   p_joint 9.428000e-01

Outputting figure to mutsig2_images.part000000000101/MAN1A2.2_1978_10000_0.494_0.5259_0.9428.png
                gene_name: MAN1A2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 96 percent done.
MAN1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.543583e-02	ci left: 1.664188e-01	ci right 1.813717e-01	k: 1738	n:10000
Cons ci ratio: 1.327479e-01	ci left: 7.485257e-02	ci right 8.559347e-02	k: 801	n:10000
KS ci ratio: 1.093867e-01	ci left: 1.075413e-01	ci right 1.200846e-01	k: 1137	n:10000
MAN1B1   10000 perm   2 sec   (5728 perm/sec)   p_kst 1.137000e-01   p_cons 8.010000e-02   p_joint 1.738000e-01

Joint ci ratio: 1.023338e-01	ci left: 6.484186e-02	ci right 7.188426e-02	k: 1366	n:20000
Cons ci ratio: 9.451095e-02	ci left: 7.544481e-02	ci right 8.297806e-02	k: 1583	n:20000
KS ci ratio: 7.806738e-02	ci left: 1.075627e-01	ci right 1.163505e-01	k: 2238	n:20000
MAN1B1   20000 perm   4 sec   (5157 perm/sec)   p_kst 1.119000e-01   p_cons 7.915000e-02   p_joint 6.830000e-02

Joint ci ratio: 8.576524e-02	ci left: 6.230123e-02	ci right 6.791668e-02	k: 1952	n:30000
Cons ci ratio: 7.654043e-02	ci left: 7.731441e-02	ci right 8.350047e-02	k: 2411	n:30000
KS ci ratio: 6.402694e-02	ci left: 1.074993e-01	ci right 1.146429e-01	k: 3331	n:30000
MAN1B1   30000 perm   6 sec   (4928 perm/sec)   p_kst 1.110333e-01   p_cons 8.036667e-02   p_joint 6.506667e-02

Outputting figure to mutsig2_images.part000000000101/MAN1B1.2_2152_30000_0.11103_0.080367_0.065067.png
                gene_name: MAN1B1
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.068 

Current progress: 98 percent done.
MAP1LC3B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.803301e-02	ci left: 6.522301e-01	ci right 6.708757e-01	k: 6616	n:10000
Cons ci ratio: 5.326853e-02	ci left: 3.418387e-01	ci right 3.606481e-01	k: 3512	n:10000
KS ci ratio: 6.805859e-02	ci left: 2.405485e-01	ci right 2.575979e-01	k: 2490	n:10000
MAP1LC3B2   10000 perm   1 sec   (6926 perm/sec)   p_kst 2.490000e-01   p_cons 3.512000e-01   p_joint 6.616000e-01

Outputting figure to mutsig2_images.part000000000101/MAP1LC3B2.2_382_10000_0.249_0.3512_0.6616.png
                gene_name: MAP1LC3B2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000101
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 101 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1419>
Subject: Job 9894010: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1419>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000102> was used as the working directory.
Started at Sat Oct  6 00:17:40 2012
Results reported at Sat Oct  6 00:31:18 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000102.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000102.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 102  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000102.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    957.85 sec.
    Max Memory :      3625 MB
    Max Swap   :      5947 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
102
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 102
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 102: processing genes 9106 - 9195
Calculating significance of each gene.
Using projection method.
9106	MAP2K6	3.285363e-01
9107	MAP2K7	1
9108	MAP3K1	7.920153e-01
9109	MAP3K10	7.551507e-01
9110	MAP3K11	6.501657e-01
9111	MAP3K12	1.391999e-01
9112	MAP3K13	2.125805e-01
9113	MAP3K14	8.951842e-01
9114	MAP3K15	8.032770e-01
9115	MAP3K2	8.228671e-01
9116	MAP3K3	5.743911e-01
9117	MAP3K4	1.853333e-03
9118	MAP3K5	7.993973e-01
9119	MAP3K6	6.026544e-01
9120	MAP3K7	6.318627e-01
9121	MAP3K8	6.156881e-01
9122	MAP3K9	7.165650e-01
9123	MAP4	9.280761e-01
9124	MAP4K1	9.358833e-01
9125	MAP4K2	8.993971e-01
9126	MAP4K3	7.200435e-01
9127	MAP4K4	7.115690e-01
9128	MAP4K5	8.536486e-01
9129	MAP6	7.429551e-01
9130	MAP6D1	1
In gene MAP7 the following bins exceed PROBCAP:
    READ-AG-3727	categ 6	N = 2282    n = 1	mu =   2.96e-07
9131	MAP7	9.000966e-03
9132	MAP7D1	9.859234e-01
9133	MAP7D2	2.009010e-01
9134	MAP7D3	1.406370e-01
9135	MAP9	2.974156e-01
9136	MAPK1	3.246682e-01
9137	MAPK10	4.515019e-04
9138	MAPK11	1
9139	MAPK12	2.051642e-01
9140	MAPK13	6.368249e-01
9141	MAPK14	4.922677e-01
9142	MAPK15	9.632777e-01
9143	MAPK1IP1L	1
9144	MAPK3	3.708565e-01
9145	MAPK4	9.486259e-01
9146	MAPK6	6.446280e-01
9147	MAPK7	7.722623e-01
9148	MAPK8	4.324835e-02
9149	MAPK8IP1	5.723927e-01
9150	MAPK8IP2	1
9151	MAPK8IP3	9.924550e-01
9152	MAPK9	1.003352e-01
9153	MAPKAP1	7.202977e-01
9154	MAPKAPK2	4.471838e-01
9155	MAPKAPK3	6.180997e-01
9156	MAPKAPK5	7.716335e-01
9157	MAPKBP1	9.281863e-02
9158	MAPKSP1	1
9159	MAPRE1	1
9160	MAPRE2	5.357807e-01
9161	MAPRE3	3.307543e-01
9162	MAPT	6.191438e-01
9163	MARCH1	4.984788e-01
9164	MARCH10	1.449985e-02
9165	MARCH11	6.847649e-01
9166	MARCH2	6.071876e-01
9167	MARCH3	1
9168	MARCH4	1
9169	MARCH5	4.448849e-01
9170	MARCH6	6.078802e-01
9171	MARCH7	1.733984e-01
9172	MARCH8	5.436275e-02
9173	MARCH9	8.016827e-01
9174	MARCKS	3.153734e-01
9175	MARCKSL1	1.859905e-02
9176	MARCO	1.197615e-03
9177	MARK1	2.694664e-02
9178	MARK2	7.055251e-01
9179	MARK3	5.690183e-01
9180	MARK4	3.621772e-01
9181	MARS	7.404000e-01
9182	MARS2	9.492795e-01
9183	MARVELD2	2.740953e-01
9184	MARVELD3	1.665454e-01
9185	MAS1	5.083666e-01
9186	MAS1L	1.029364e-01
9187	MASP1	6.556005e-03
9188	MASP2	3.934064e-01
9189	MAST1	9.344197e-01
9190	MAST2	9.639717e-01
9191	MAST3	9.619337e-01
9192	MAST4	9.425231e-01
9193	MASTL	3.389441e-01
9194	MAT1A	2.278532e-01
9195	MAT2A	6.614443e-01
Done

Running MutSig 2:
Scatter job 102: processing genes 9106 - 9195
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MAP3K4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.083685e-01	ci left: 1.093957e-01	ci right 1.220291e-01	k: 1156	n:10000
Cons ci ratio: 2.073636e-01	ci left: 3.091404e-02	ci right 3.816041e-02	k: 344	n:10000
KS ci ratio: 4.633221e-02	ci left: 4.074111e-01	ci right 4.268372e-01	k: 4171	n:10000
MAP3K4   10000 perm   3 sec   (3421 perm/sec)   p_kst 4.171000e-01   p_cons 3.440000e-02   p_joint 1.156000e-01

Joint ci ratio: 9.289637e-02	ci left: 7.793991e-02	ci right 8.558220e-02	k: 1634	n:20000
Cons ci ratio: 1.499261e-01	ci left: 3.056735e-02	ci right 3.556960e-02	k: 660	n:20000
KS ci ratio: 3.278843e-02	ci left: 4.099047e-01	ci right 4.236195e-01	k: 8335	n:20000
MAP3K4   20000 perm   10 sec   (2092 perm/sec)   p_kst 4.167500e-01   p_cons 3.300000e-02   p_joint 8.170000e-02

Joint ci ratio: 6.748386e-02	ci left: 9.767795e-02	ci right 1.045328e-01	k: 3032	n:30000
Cons ci ratio: 1.202071e-01	ci left: 3.217197e-02	ci right 3.631887e-02	k: 1026	n:30000
KS ci ratio: 2.668181e-02	ci left: 4.128094e-01	ci right 4.240064e-01	k: 12552	n:30000
MAP3K4   30000 perm   13 sec   (2310 perm/sec)   p_kst 4.184000e-01   p_cons 3.420000e-02   p_joint 1.010667e-01

Joint ci ratio: 5.951285e-02	ci left: 9.493046e-02	ci right 1.007781e-01	k: 3913	n:40000
Cons ci ratio: 1.043926e-01	ci left: 3.226975e-02	ci right 3.584831e-02	k: 1361	n:40000
KS ci ratio: 2.316216e-02	ci left: 4.124113e-01	ci right 4.221007e-01	k: 16690	n:40000
MAP3K4   40000 perm   16 sec   (2429 perm/sec)   p_kst 4.172500e-01   p_cons 3.402500e-02   p_joint 9.782500e-02

Joint ci ratio: 5.187439e-02	ci left: 9.983483e-02	ci right 1.051714e-01	k: 5124	n:50000
Cons ci ratio: 9.290674e-02	ci left: 3.278048e-02	ci right 3.599388e-02	k: 1718	n:50000
KS ci ratio: 2.076441e-02	ci left: 4.118144e-01	ci right 4.204753e-01	k: 20807	n:50000
MAP3K4   50000 perm   20 sec   (2500 perm/sec)   p_kst 4.161400e-01   p_cons 3.436000e-02   p_joint 1.024800e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K4.18_4935_50000_0.41614_0.03436_0.10248.png
                gene_name: MAP3K4
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.100 
    ci_joint_bounds_right: 0.11 

Current progress: 1 percent done.
MAST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.453474e-01	ci left: 6.285242e-02	ci right 7.280114e-02	k: 677	n:10000
Cons ci ratio: 2.135306e-01	ci left: 2.911124e-02	ci right 3.616447e-02	k: 325	n:10000
KS ci ratio: 8.729533e-02	ci left: 1.604251e-01	ci right 1.751689e-01	k: 1677	n:10000
MAST4   10000 perm   3 sec   (3023 perm/sec)   p_kst 1.677000e-01   p_cons 3.250000e-02   p_joint 6.770000e-02

Joint ci ratio: 9.902981e-02	ci left: 6.904119e-02	ci right 7.628364e-02	k: 1452	n:20000
Cons ci ratio: 1.656068e-01	ci left: 2.498955e-02	ci right 2.954929e-02	k: 544	n:20000
KS ci ratio: 6.239950e-02	ci left: 1.596329e-01	ci right 1.699647e-01	k: 3295	n:20000
MAST4   20000 perm   7 sec   (2812 perm/sec)   p_kst 1.647500e-01   p_cons 2.720000e-02   p_joint 7.260000e-02

Joint ci ratio: 8.713328e-02	ci left: 6.043968e-02	ci right 6.597862e-02	k: 1895	n:30000
Cons ci ratio: 1.266724e-01	ci left: 2.897069e-02	ci right 3.292083e-02	k: 927	n:30000
KS ci ratio: 5.103578e-02	ci left: 1.601229e-01	ci right 1.685422e-01	k: 4929	n:30000
MAST4   30000 perm   11 sec   (2730 perm/sec)   p_kst 1.643000e-01   p_cons 3.090000e-02   p_joint 6.316667e-02

Joint ci ratio: 6.947269e-02	ci left: 7.115800e-02	ci right 7.630409e-02	k: 2948	n:40000
Cons ci ratio: 1.107375e-01	ci left: 2.869052e-02	ci right 3.207811e-02	k: 1214	n:40000
KS ci ratio: 4.416758e-02	ci left: 1.608789e-01	ci right 1.681699e-01	k: 6580	n:40000
MAST4   40000 perm   15 sec   (2662 perm/sec)   p_kst 1.645000e-01   p_cons 3.035000e-02   p_joint 7.370000e-02

Joint ci ratio: 6.219533e-02	ci left: 7.130632e-02	ci right 7.590333e-02	k: 3679	n:50000
Cons ci ratio: 1.005153e-01	ci left: 2.803426e-02	ci right 3.102069e-02	k: 1475	n:50000
KS ci ratio: 3.978073e-02	ci left: 1.593753e-01	ci right 1.658639e-01	k: 8130	n:50000
MAST4   50000 perm   19 sec   (2615 perm/sec)   p_kst 1.626000e-01   p_cons 2.950000e-02   p_joint 7.358000e-02

Joint ci ratio: 6.848036e-02	ci left: 5.000727e-02	ci right 5.356958e-02	k: 3106	n:60000
Cons ci ratio: 9.850138e-02	ci left: 2.444850e-02	ci right 2.699766e-02	k: 1542	n:60000
KS ci ratio: 3.667033e-02	ci left: 1.570417e-01	ci right 1.629246e-01	k: 9598	n:60000
MAST4   60000 perm   23 sec   (2574 perm/sec)   p_kst 1.599667e-01   p_cons 2.570000e-02   p_joint 5.176667e-02

Outputting figure to mutsig2_images.part000000000102/MAST4.13_8118_60000_0.15997_0.0257_0.051767.png
                gene_name: MAST4
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.054 

Current progress: 3 percent done.
MASP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.256539e-02	ci left: 7.425032e-01	ci right 7.595503e-01	k: 7511	n:10000
Cons ci ratio: 3.202987e-02	ci left: 5.899187e-01	ci right 6.092232e-01	k: 5996	n:10000
KS ci ratio: 3.178368e-02	ci left: 5.936327e-01	ci right 6.129071e-01	k: 6033	n:10000
MASP1   10000 perm   2 sec   (4188 perm/sec)   p_kst 6.033000e-01   p_cons 5.996000e-01   p_joint 7.511000e-01

Outputting figure to mutsig2_images.part000000000102/MASP1.12_3109_10000_0.6033_0.5996_0.7511.png
                gene_name: MASP1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 4 percent done.
MAPKBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.701460e-01	ci left: 4.609774e-02	ci right 5.476655e-02	k: 503	n:10000
Cons ci ratio: 1.960073e-02	ci left: 7.920233e-01	ci right 8.078016e-01	k: 8000	n:10000
KS ci ratio: 2.729973e-01	ci left: 1.743979e-02	ci right 2.304459e-02	k: 201	n:10000
MAPKBP1   10000 perm   3 sec   (3494 perm/sec)   p_kst 2.010000e-02   p_cons 8.000000e-01   p_joint 5.030000e-02

Joint ci ratio: 1.110461e-01	ci left: 5.538421e-02	ci right 6.194483e-02	k: 1172	n:20000
Cons ci ratio: 1.414694e-02	ci left: 7.876710e-01	ci right 7.989436e-01	k: 15867	n:20000
KS ci ratio: 1.901799e-01	ci left: 1.881935e-02	ci right 2.282166e-02	k: 415	n:20000
MAPKBP1   20000 perm   6 sec   (3215 perm/sec)   p_kst 2.075000e-02   p_cons 7.933500e-01   p_joint 5.860000e-02

Joint ci ratio: 1.002064e-01	ci left: 4.609628e-02	ci right 5.099163e-02	k: 1455	n:30000
Cons ci ratio: 1.162539e-02	ci left: 7.865895e-01	ci right 7.958207e-01	k: 23737	n:30000
KS ci ratio: 1.536558e-01	ci left: 1.959977e-02	ci right 2.289386e-02	k: 636	n:30000
MAPKBP1   30000 perm   9 sec   (3177 perm/sec)   p_kst 2.120000e-02   p_cons 7.912333e-01   p_joint 4.850000e-02

Joint ci ratio: 8.116493e-02	ci left: 5.285926e-02	ci right 5.735560e-02	k: 2203	n:40000
Cons ci ratio: 1.005745e-02	ci left: 7.875609e-01	ci right 7.955467e-01	k: 31663	n:40000
KS ci ratio: 1.323819e-01	ci left: 2.002834e-02	ci right 2.289172e-02	k: 857	n:40000
MAPKBP1   40000 perm   13 sec   (3124 perm/sec)   p_kst 2.142500e-02   p_cons 7.915750e-01   p_joint 5.507500e-02

Joint ci ratio: 7.137070e-02	ci left: 5.486563e-02	ci right 5.894601e-02	k: 2844	n:50000
Cons ci ratio: 8.993872e-03	ci left: 7.880532e-01	ci right 7.951929e-01	k: 39582	n:50000
KS ci ratio: 1.177627e-01	ci left: 2.040187e-02	ci right 2.297408e-02	k: 1083	n:50000
MAPKBP1   50000 perm   16 sec   (3090 perm/sec)   p_kst 2.166000e-02   p_cons 7.916400e-01   p_joint 5.688000e-02

Joint ci ratio: 7.729882e-02	ci left: 3.950907e-02	ci right 4.270218e-02	k: 2465	n:60000
Cons ci ratio: 8.197129e-03	ci left: 7.888976e-01	ci right 7.954075e-01	k: 47530	n:60000
KS ci ratio: 1.125983e-01	ci left: 1.868402e-02	ci right 2.092943e-02	k: 1187	n:60000
MAPKBP1   60000 perm   20 sec   (3058 perm/sec)   p_kst 1.978333e-02   p_cons 7.921667e-01   p_joint 4.108333e-02

Joint ci ratio: 7.512128e-02	ci left: 3.603453e-02	ci right 3.886112e-02	k: 2620	n:70000
Cons ci ratio: 7.554369e-03	ci left: 7.906544e-01	ci right 7.966641e-01	k: 55557	n:70000
KS ci ratio: 1.049824e-01	ci left: 1.850240e-02	ci right 2.056627e-02	k: 1366	n:70000
MAPKBP1   70000 perm   23 sec   (3024 perm/sec)   p_kst 1.951429e-02   p_cons 7.936714e-01   p_joint 3.742857e-02

Joint ci ratio: 7.125690e-02	ci left: 3.514966e-02	ci right 3.775910e-02	k: 2915	n:80000
Cons ci ratio: 6.994041e-03	ci left: 7.942209e-01	ci right 7.998076e-01	k: 63762	n:80000
KS ci ratio: 9.882603e-02	ci left: 1.833347e-02	ci right 2.025161e-02	k: 1542	n:80000
MAPKBP1   80000 perm   27 sec   (2987 perm/sec)   p_kst 1.927500e-02   p_cons 7.970250e-01   p_joint 3.643750e-02

Outputting figure to mutsig2_images.part000000000102/MAPKBP1.11_4669_80000_0.019275_0.79702_0.036437.png
                gene_name: MAPKBP1
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 6 percent done.
MAP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.862361e-02	ci left: 6.427720e-01	ci right 6.615393e-01	k: 6522	n:10000
Cons ci ratio: 3.981027e-02	ci left: 4.823548e-01	ci right 5.020497e-01	k: 4922	n:10000
KS ci ratio: 4.452217e-02	ci left: 4.268489e-01	ci right 4.463880e-01	k: 4366	n:10000
MAP7   10000 perm   2 sec   (4354 perm/sec)   p_kst 4.366000e-01   p_cons 4.922000e-01   p_joint 6.522000e-01

Outputting figure to mutsig2_images.part000000000102/MAP7.10_2322_10000_0.4366_0.4922_0.6522.png
                gene_name: MAP7
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 7 percent done.
MARCO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.144619e-02	ci left: 9.160549e-01	ci right 9.266981e-01	k: 9215	n:10000
Cons ci ratio: 1.224924e-02	ci left: 9.053515e-01	ci right 9.166077e-01	k: 9111	n:10000
KS ci ratio: 1.668181e-02	ci left: 8.394879e-01	ci right 8.537096e-01	k: 8467	n:10000
MARCO   10000 perm   2 sec   (5720 perm/sec)   p_kst 8.467000e-01   p_cons 9.111000e-01   p_joint 9.215000e-01

Outputting figure to mutsig2_images.part000000000102/MARCO.10_1631_10000_0.8467_0.9111_0.9215.png
                gene_name: MARCO
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 9 percent done.
MARK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.417902e-01	ci left: 6.594512e-02	ci right 7.610649e-02	k: 709	n:10000
Cons ci ratio: 3.067289e-02	ci left: 6.106037e-01	ci right 6.297263e-01	k: 6202	n:10000
KS ci ratio: 3.376227e-01	ci left: 1.105573e-02	ci right 1.563427e-02	k: 132	n:10000
MARK1   10000 perm   2 sec   (4671 perm/sec)   p_kst 1.320000e-02   p_cons 6.202000e-01   p_joint 7.090000e-02

Joint ci ratio: 1.240530e-01	ci left: 4.459306e-02	ci right 5.053936e-02	k: 950	n:20000
Cons ci ratio: 2.104357e-02	ci left: 6.276312e-01	ci right 6.410298e-01	k: 12687	n:20000
KS ci ratio: 2.520380e-01	ci left: 1.044346e-02	ci right 1.350089e-02	k: 238	n:20000
MARK1   20000 perm   5 sec   (4185 perm/sec)   p_kst 1.190000e-02   p_cons 6.343500e-01   p_joint 4.750000e-02

Joint ci ratio: 8.131155e-02	ci left: 6.896905e-02	ci right 7.484751e-02	k: 2156	n:30000
Cons ci ratio: 1.721376e-02	ci left: 6.280181e-01	ci right 6.389560e-01	k: 19005	n:30000
KS ci ratio: 2.030836e-01	ci left: 1.102017e-02	ci right 1.354227e-02	k: 367	n:30000
MARK1   30000 perm   8 sec   (3984 perm/sec)   p_kst 1.223333e-02   p_cons 6.335000e-01   p_joint 7.186667e-02

Joint ci ratio: 7.927892e-02	ci left: 5.531193e-02	ci right 5.990256e-02	k: 2303	n:40000
Cons ci ratio: 1.467894e-02	ci left: 6.359254e-01	ci right 6.453542e-01	k: 25626	n:40000
KS ci ratio: 1.772839e-01	ci left: 1.100379e-02	ci right 1.316791e-02	k: 482	n:40000
MARK1   40000 perm   10 sec   (3853 perm/sec)   p_kst 1.205000e-02   p_cons 6.406500e-01   p_joint 5.757500e-02

Joint ci ratio: 7.713133e-02	ci left: 4.722226e-02	ci right 5.103031e-02	k: 2455	n:50000
Cons ci ratio: 1.314613e-02	ci left: 6.358348e-01	ci right 6.442689e-01	k: 32003	n:50000
KS ci ratio: 1.582696e-01	ci left: 1.116008e-02	ci right 1.309718e-02	k: 605	n:50000
MARK1   50000 perm   13 sec   (3766 perm/sec)   p_kst 1.210000e-02   p_cons 6.400600e-01   p_joint 4.910000e-02

Joint ci ratio: 7.483252e-02	ci left: 4.209441e-02	ci right 4.538324e-02	k: 2623	n:60000
Cons ci ratio: 1.201100e-02	ci left: 6.358101e-01	ci right 6.435097e-01	k: 38380	n:60000
KS ci ratio: 1.462408e-01	ci left: 1.096736e-02	ci right 1.271367e-02	k: 709	n:60000
MARK1   60000 perm   16 sec   (3683 perm/sec)   p_kst 1.181667e-02   p_cons 6.396667e-01   p_joint 4.371667e-02

Joint ci ratio: 7.317106e-02	ci left: 3.794273e-02	ci right 4.083847e-02	k: 2756	n:70000
Cons ci ratio: 1.125157e-02	ci left: 6.306479e-01	ci right 6.377981e-01	k: 44396	n:70000
KS ci ratio: 1.365090e-01	ci left: 1.084754e-02	ci right 1.245047e-02	k: 814	n:70000
MARK1   70000 perm   19 sec   (3616 perm/sec)   p_kst 1.162857e-02   p_cons 6.342286e-01   p_joint 3.937143e-02

Joint ci ratio: 7.230565e-02	ci left: 3.415469e-02	ci right 3.672914e-02	k: 2834	n:80000
Cons ci ratio: 1.052101e-02	ci left: 6.310517e-01	ci right 6.377386e-01	k: 50752	n:80000
KS ci ratio: 1.273767e-01	ci left: 1.095425e-02	ci right 1.245648e-02	k: 935	n:80000
MARK1   80000 perm   23 sec   (3545 perm/sec)   p_kst 1.168750e-02   p_cons 6.344000e-01   p_joint 3.542500e-02

Joint ci ratio: 6.417100e-02	ci left: 3.853212e-02	ci right 4.109765e-02	k: 3582	n:90000
Cons ci ratio: 9.914331e-03	ci left: 6.314775e-01	ci right 6.377805e-01	k: 57117	n:90000
KS ci ratio: 1.182865e-01	ci left: 1.134198e-02	ci right 1.277862e-02	k: 1084	n:90000
MARK1   90000 perm   26 sec   (3490 perm/sec)   p_kst 1.204444e-02   p_cons 6.346333e-01   p_joint 3.980000e-02

Joint ci ratio: 6.993619e-02	ci left: 2.939369e-02	ci right 3.153366e-02	k: 3045	n:100000
Cons ci ratio: 9.407462e-03	ci left: 6.315465e-01	ci right 6.375257e-01	k: 63454	n:100000
KS ci ratio: 1.121955e-01	ci left: 1.138293e-02	ci right 1.274559e-02	k: 1205	n:100000
MARK1   100000 perm   29 sec   (3452 perm/sec)   p_kst 1.205000e-02   p_cons 6.345400e-01   p_joint 3.045000e-02

Joint ci ratio: 7.325269e-02	ci left: 2.444249e-02	ci right 2.630993e-02	k: 2790	n:110000
Cons ci ratio: 8.964292e-03	ci left: 6.319648e-01	ci right 6.376645e-01	k: 69830	n:110000
KS ci ratio: 1.122108e-01	ci left: 1.035664e-02	ci right 1.159662e-02	k: 1206	n:110000
MARK1   110000 perm   32 sec   (3414 perm/sec)   p_kst 1.096364e-02   p_cons 6.348182e-01   p_joint 2.536364e-02

Joint ci ratio: 6.819105e-02	ci left: 2.588534e-02	ci right 2.772096e-02	k: 3215	n:120000
Cons ci ratio: 8.585158e-03	ci left: 6.319515e-01	ci right 6.374086e-01	k: 76162	n:120000
KS ci ratio: 1.076707e-01	ci left: 1.033642e-02	ci right 1.152073e-02	k: 1310	n:120000
MARK1   120000 perm   36 sec   (3372 perm/sec)   p_kst 1.091667e-02   p_cons 6.346833e-01   p_joint 2.679167e-02

Joint ci ratio: 6.934313e-02	ci left: 2.315969e-02	ci right 2.483087e-02	k: 3118	n:130000
Cons ci ratio: 8.247104e-03	ci left: 6.321296e-01	ci right 6.373721e-01	k: 82518	n:130000
KS ci ratio: 1.026909e-01	ci left: 1.051506e-02	ci right 1.166075e-02	k: 1440	n:130000
MARK1   130000 perm   39 sec   (3328 perm/sec)   p_kst 1.107692e-02   p_cons 6.347538e-01   p_joint 2.398462e-02

Joint ci ratio: 6.814098e-02	ci left: 2.230538e-02	ci right 2.388589e-02	k: 3232	n:140000
Cons ci ratio: 7.947178e-03	ci left: 6.322215e-01	ci right 6.372730e-01	k: 88865	n:140000
KS ci ratio: 9.904735e-02	ci left: 1.051595e-02	ci right 1.161872e-02	k: 1548	n:140000
MARK1   140000 perm   43 sec   (3288 perm/sec)   p_kst 1.105714e-02   p_cons 6.347500e-01   p_joint 2.308571e-02

Outputting figure to mutsig2_images.part000000000102/MARK1.10_2460_140000_0.011057_0.63475_0.023086.png
                gene_name: MARK1
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 10 percent done.
MAP3K13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.719572e-02	ci left: 3.103647e-01	ci right 3.287406e-01	k: 3195	n:10000
Cons ci ratio: 1.869607e-02	ci left: 8.069435e-01	ci right 8.222728e-01	k: 8147	n:10000
KS ci ratio: 9.446282e-02	ci left: 1.399172e-01	ci right 1.538892e-01	k: 1468	n:10000
MAP3K13   10000 perm   2 sec   (4531 perm/sec)   p_kst 1.468000e-01   p_cons 8.147000e-01   p_joint 3.195000e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K13.9_2953_10000_0.1468_0.8147_0.3195.png
                gene_name: MAP3K13
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 12 percent done.
MARCH10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
Cons ci ratio: 1.190559e-01	ci left: 9.194847e-02	ci right 1.036870e-01	k: 977	n:10000
KS ci ratio: 1.281968e-01	ci left: 7.999369e-02	ci right 9.104916e-02	k: 854	n:10000
MARCH10   10000 perm   2 sec   (4581 perm/sec)   p_kst 8.540000e-02   p_cons 9.770000e-02   p_joint 3.600000e-02

Joint ci ratio: 1.199386e-01	ci left: 4.765147e-02	ci right 5.377999e-02	k: 1013	n:20000
Cons ci ratio: 8.320037e-02	ci left: 9.572844e-02	ci right 1.040883e-01	k: 1997	n:20000
KS ci ratio: 9.097100e-02	ci left: 8.107257e-02	ci right 8.884859e-02	k: 1698	n:20000
MARCH10   20000 perm   5 sec   (4121 perm/sec)   p_kst 8.490000e-02   p_cons 9.985000e-02   p_joint 5.065000e-02

Joint ci ratio: 1.690855e-01	ci left: 1.611029e-02	ci right 1.911750e-02	k: 527	n:30000
Cons ci ratio: 7.034453e-02	ci left: 9.049083e-02	ci right 9.712141e-02	k: 2813	n:30000
KS ci ratio: 7.422233e-02	ci left: 8.190061e-02	ci right 8.824668e-02	k: 2551	n:30000
MARCH10   30000 perm   8 sec   (3902 perm/sec)   p_kst 8.503333e-02   p_cons 9.376667e-02   p_joint 1.756667e-02

Joint ci ratio: 1.116410e-01	ci left: 2.822835e-02	ci right 3.159035e-02	k: 1195	n:40000
Cons ci ratio: 6.060006e-02	ci left: 9.182295e-02	ci right 9.758605e-02	k: 3787	n:40000
KS ci ratio: 6.388612e-02	ci left: 8.327011e-02	ci right 8.879017e-02	k: 3440	n:40000
MARCH10   40000 perm   11 sec   (3676 perm/sec)   p_kst 8.600000e-02   p_cons 9.467500e-02   p_joint 2.987500e-02

Joint ci ratio: 8.366265e-02	ci left: 4.029762e-02	ci right 4.383579e-02	k: 2102	n:50000
Cons ci ratio: 5.168917e-02	ci left: 1.004872e-01	ci right 1.058390e-01	k: 5157	n:50000
KS ci ratio: 5.707085e-02	ci left: 8.375403e-02	ci right 8.869413e-02	k: 4310	n:50000
MARCH10   50000 perm   14 sec   (3615 perm/sec)   p_kst 8.620000e-02   p_cons 1.031400e-01   p_joint 4.204000e-02

Outputting figure to mutsig2_images.part000000000102/MARCH10.9_2467_50000_0.0862_0.10314_0.04204.png
                gene_name: MARCH10
               theta_stop: 0.084 
                    nperm: 50000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.044 

Current progress: 13 percent done.
MAP3K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.341748e-02	ci left: 4.392173e-01	ci right 4.588124e-01	k: 4490	n:10000
Cons ci ratio: 8.307477e-02	ci left: 1.744810e-01	ci right 1.897046e-01	k: 1820	n:10000
KS ci ratio: 2.437178e-02	ci left: 7.122978e-01	ci right 7.299732e-01	k: 7212	n:10000
MAP3K1   10000 perm   3 sec   (3924 perm/sec)   p_kst 7.212000e-01   p_cons 1.820000e-01   p_joint 4.490000e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K1.8_4619_10000_0.7212_0.182_0.449.png
                gene_name: MAP3K1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 15 percent done.
MAP4K4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.529928e-01	ci left: 5.686952e-02	ci right 6.638783e-02	k: 615	n:10000
Cons ci ratio: 3.527114e-01	ci left: 1.005013e-02	ci right 1.444087e-02	k: 121	n:10000
KS ci ratio: 2.281878e-02	ci left: 7.382572e-01	ci right 7.553988e-01	k: 7469	n:10000
MAP4K4   10000 perm   2 sec   (4229 perm/sec)   p_kst 7.469000e-01   p_cons 1.210000e-02   p_joint 6.150000e-02

Joint ci ratio: 8.999049e-02	ci left: 8.273747e-02	ci right 9.058319e-02	k: 1732	n:20000
Cons ci ratio: 2.191154e-01	ci left: 1.402283e-02	ci right 1.752001e-02	k: 314	n:20000
KS ci ratio: 1.633178e-02	ci left: 7.361786e-01	ci right 7.483509e-01	k: 14846	n:20000
MAP4K4   20000 perm   5 sec   (3812 perm/sec)   p_kst 7.423000e-01   p_cons 1.570000e-02   p_joint 8.660000e-02

Joint ci ratio: 6.249690e-02	ci left: 1.122984e-01	ci right 1.195762e-01	k: 3477	n:30000
Cons ci ratio: 1.861452e-01	ci left: 1.320961e-02	ci right 1.595225e-02	k: 436	n:30000
KS ci ratio: 1.319086e-02	ci left: 7.414700e-01	ci right 7.513489e-01	k: 22393	n:30000
MAP4K4   30000 perm   8 sec   (3663 perm/sec)   p_kst 7.464333e-01   p_cons 1.453333e-02   p_joint 1.159000e-01

Joint ci ratio: 5.920317e-02	ci left: 9.584316e-02	ci right 1.017152e-01	k: 3950	n:40000
Cons ci ratio: 1.733310e-01	ci left: 1.152992e-02	ci right 1.374168e-02	k: 504	n:40000
KS ci ratio: 1.112968e-02	ci left: 7.519361e-01	ci right 7.603767e-01	k: 30247	n:40000
MAP4K4   40000 perm   11 sec   (3561 perm/sec)   p_kst 7.561750e-01   p_cons 1.260000e-02   p_joint 9.875000e-02

Joint ci ratio: 6.096995e-02	ci left: 7.402711e-02	ci right 7.870221e-02	k: 3817	n:50000
Cons ci ratio: 1.574823e-01	ci left: 1.127539e-02	ci right 1.322185e-02	k: 611	n:50000
KS ci ratio: 9.963740e-03	ci left: 7.520498e-01	ci right 7.596005e-01	k: 37792	n:50000
MAP4K4   50000 perm   14 sec   (3484 perm/sec)   p_kst 7.558400e-01   p_cons 1.222000e-02   p_joint 7.634000e-02

Joint ci ratio: 5.875332e-02	ci left: 6.703385e-02	ci right 7.110795e-02	k: 4143	n:60000
Cons ci ratio: 1.416668e-01	ci left: 1.170673e-02	ci right 1.350754e-02	k: 755	n:60000
KS ci ratio: 9.110972e-03	ci left: 7.517557e-01	ci right 7.586529e-01	k: 45313	n:60000
MAP4K4   60000 perm   18 sec   (3418 perm/sec)   p_kst 7.552167e-01   p_cons 1.258333e-02   p_joint 6.905000e-02

Joint ci ratio: 3.982651e-02	ci left: 1.191450e-01	ci right 1.240007e-01	k: 8509	n:70000
Cons ci ratio: 1.137386e-01	ci left: 1.573587e-02	ci right 1.764736e-02	k: 1167	n:70000
KS ci ratio: 8.427682e-03	ci left: 7.523415e-01	ci right 7.587230e-01	k: 52888	n:70000
MAP4K4   70000 perm   21 sec   (3360 perm/sec)   p_kst 7.555429e-01   p_cons 1.667143e-02   p_joint 1.215571e-01

Joint ci ratio: 3.862267e-02	ci left: 1.118675e-01	ci right 1.162856e-01	k: 9125	n:80000
Cons ci ratio: 1.065902e-01	ci left: 1.573812e-02	ci right 1.752218e-02	k: 1329	n:80000
KS ci ratio: 7.888025e-03	ci left: 7.523306e-01	ci right 7.583009e-01	k: 60426	n:80000
MAP4K4   80000 perm   24 sec   (3305 perm/sec)   p_kst 7.553250e-01   p_cons 1.661250e-02   p_joint 1.140625e-01

Joint ci ratio: 3.661084e-02	ci left: 1.109165e-01	ci right 1.150640e-01	k: 10168	n:90000
Cons ci ratio: 1.009498e-01	ci left: 1.564530e-02	ci right 1.731941e-02	k: 1482	n:90000
KS ci ratio: 7.428240e-03	ci left: 7.529349e-01	ci right 7.585598e-01	k: 68018	n:90000
MAP4K4   90000 perm   28 sec   (3246 perm/sec)   p_kst 7.557556e-01   p_cons 1.646667e-02   p_joint 1.129778e-01

Joint ci ratio: 3.447616e-02	ci left: 1.125029e-01	ci right 1.164595e-01	k: 11447	n:100000
Cons ci ratio: 9.543948e-02	ci left: 1.579762e-02	ci right 1.739060e-02	k: 1658	n:100000
KS ci ratio: 7.035701e-03	ci left: 7.536769e-01	ci right 7.590082e-01	k: 75635	n:100000
MAP4K4   100000 perm   31 sec   (3195 perm/sec)   p_kst 7.563500e-01   p_cons 1.658000e-02   p_joint 1.144700e-01

Outputting figure to mutsig2_images.part000000000102/MAP4K4.8_4115_100000_0.75635_0.01658_0.11447.png
                gene_name: MAP4K4
               theta_stop: 0.095 
                    nperm: 100000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 16 percent done.
MAP7D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.857181e-02	ci left: 2.377814e-01	ci right 2.547666e-01	k: 2462	n:10000
Cons ci ratio: 1.731953e-02	ci left: 8.293074e-01	ci right 8.438960e-01	k: 8367	n:10000
KS ci ratio: 1.106525e-01	ci left: 1.052972e-01	ci right 1.177301e-01	k: 1114	n:10000
MAP7D2   10000 perm   2 sec   (4750 perm/sec)   p_kst 1.114000e-01   p_cons 8.367000e-01   p_joint 2.462000e-01

Joint ci ratio: 5.838128e-02	ci left: 1.785522e-01	ci right 1.893398e-01	k: 3678	n:20000
Cons ci ratio: 1.239594e-02	ci left: 8.281119e-01	ci right 8.384910e-01	k: 16667	n:20000
KS ci ratio: 7.579852e-02	ci left: 1.134614e-01	ci right 1.224500e-01	k: 2358	n:20000
MAP7D2   20000 perm   5 sec   (4257 perm/sec)   p_kst 1.179000e-01   p_cons 8.333500e-01   p_joint 1.839000e-01

Outputting figure to mutsig2_images.part000000000102/MAP7D2.8_2386_20000_0.1179_0.83335_0.1839.png
                gene_name: MAP7D2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 18 percent done.
MAPK10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.005765e-02	ci left: 6.201489e-01	ci right 6.391755e-01	k: 6297	n:10000
Cons ci ratio: 8.924358e-03	ci left: 9.463777e-01	ci right 9.549573e-01	k: 9508	n:10000
KS ci ratio: 4.240530e-02	ci left: 4.508931e-01	ci right 4.705298e-01	k: 4607	n:10000
MAPK10   10000 perm   2 sec   (5185 perm/sec)   p_kst 4.607000e-01   p_cons 9.508000e-01   p_joint 6.297000e-01

Outputting figure to mutsig2_images.part000000000102/MAPK10.8_1448_10000_0.4607_0.9508_0.6297.png
                gene_name: MAPK10
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 19 percent done.
MAP7D3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.346742e-01	ci left: 7.281740e-02	ci right 8.342992e-02	k: 780	n:10000
Cons ci ratio: 1.443225e-01	ci left: 6.372193e-02	ci right 7.373108e-02	k: 686	n:10000
KS ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
MAP7D3   10000 perm   2 sec   (4968 perm/sec)   p_kst 7.940000e-02   p_cons 6.860000e-02   p_joint 7.800000e-02

Joint ci ratio: 1.430211e-01	ci left: 3.360565e-02	ci right 3.883031e-02	k: 723	n:20000
Cons ci ratio: 1.039761e-01	ci left: 6.289002e-02	ci right 6.983670e-02	k: 1326	n:20000
KS ci ratio: 9.406027e-02	ci left: 7.612963e-02	ci right 8.369304e-02	k: 1597	n:20000
MAP7D3   20000 perm   4 sec   (4456 perm/sec)   p_kst 7.985000e-02   p_cons 6.630000e-02   p_joint 3.615000e-02

Joint ci ratio: 1.154599e-01	ci left: 3.485986e-02	ci right 3.916373e-02	k: 1109	n:30000
Cons ci ratio: 8.045081e-02	ci left: 7.037552e-02	ci right 7.630742e-02	k: 2199	n:30000
KS ci ratio: 7.874493e-02	ci left: 7.328763e-02	ci right 7.932806e-02	k: 2288	n:30000
MAP7D3   30000 perm   7 sec   (4260 perm/sec)   p_kst 7.626667e-02   p_cons 7.330000e-02   p_joint 3.696667e-02

Joint ci ratio: 1.032215e-01	ci left: 3.300092e-02	ci right 3.661702e-02	k: 1391	n:40000
Cons ci ratio: 7.349331e-02	ci left: 6.395451e-02	ci right 6.885867e-02	k: 2655	n:40000
KS ci ratio: 6.830444e-02	ci left: 7.347062e-02	ci right 7.869112e-02	k: 3042	n:40000
MAP7D3   40000 perm   10 sec   (4125 perm/sec)   p_kst 7.605000e-02   p_cons 6.637500e-02   p_joint 3.477500e-02

Joint ci ratio: 9.863736e-02	ci left: 2.910765e-02	ci right 3.214716e-02	k: 1530	n:50000
Cons ci ratio: 6.600112e-02	ci left: 6.372084e-02	ci right 6.808972e-02	k: 3294	n:50000
KS ci ratio: 6.078056e-02	ci left: 7.446095e-02	ci right 7.914833e-02	k: 3839	n:50000
MAP7D3   50000 perm   12 sec   (4018 perm/sec)   p_kst 7.678000e-02   p_cons 6.588000e-02   p_joint 3.060000e-02

Outputting figure to mutsig2_images.part000000000102/MAP7D3.7_2723_50000_0.07678_0.06588_0.0306.png
                gene_name: MAP7D3
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 21 percent done.
MAPK8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.735700e-02	ci left: 3.968515e-01	ci right 4.162030e-01	k: 4065	n:10000
Cons ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
KS ci ratio: 5.479894e-02	ci left: 3.291243e-01	ci right 3.477699e-01	k: 3384	n:10000
MAPK8   10000 perm   2 sec   (5302 perm/sec)   p_kst 3.384000e-01   p_cons 2.945000e-01   p_joint 4.065000e-01

Outputting figure to mutsig2_images.part000000000102/MAPK8.7_1409_10000_0.3384_0.2945_0.4065.png
                gene_name: MAPK8
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 22 percent done.
MASTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.749121e-02	ci left: 5.123546e-01	ci right 5.320325e-01	k: 5222	n:10000
Cons ci ratio: 2.934637e-02	ci left: 6.313068e-01	ci right 6.502111e-01	k: 6408	n:10000
KS ci ratio: 5.241476e-02	ci left: 3.491925e-01	ci right 3.680899e-01	k: 3586	n:10000
MASTL   10000 perm   2 sec   (4641 perm/sec)   p_kst 3.586000e-01   p_cons 6.408000e-01   p_joint 5.222000e-01

Outputting figure to mutsig2_images.part000000000102/MASTL.7_2688_10000_0.3586_0.6408_0.5222.png
                gene_name: MASTL
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 24 percent done.
MAP3K12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.869935e-02	ci left: 6.415648e-01	ci right 6.603472e-01	k: 6510	n:10000
Cons ci ratio: 5.119552e-02	ci left: 3.600290e-01	ci right 3.790471e-01	k: 3695	n:10000
KS ci ratio: 3.410571e-02	ci left: 5.593253e-01	ci right 5.788345e-01	k: 5691	n:10000
MAP3K12   10000 perm   2 sec   (4450 perm/sec)   p_kst 5.691000e-01   p_cons 3.695000e-01   p_joint 6.510000e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K12.6_2636_10000_0.5691_0.3695_0.651.png
                gene_name: MAP3K12
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 25 percent done.
MAP3K5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.683164e-02	ci left: 1.339403e-01	ci right 1.476696e-01	k: 1407	n:10000
Cons ci ratio: 1.362230e-02	ci left: 8.860594e-01	ci right 8.983110e-01	k: 8923	n:10000
KS ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
MAP3K5   10000 perm   2 sec   (4188 perm/sec)   p_kst 7.400000e-02   p_cons 8.923000e-01   p_joint 1.407000e-01

Joint ci ratio: 7.075435e-02	ci left: 1.283224e-01	ci right 1.377845e-01	k: 2660	n:20000
Cons ci ratio: 9.434680e-03	ci left: 8.918902e-01	ci right 9.003942e-01	k: 17924	n:20000
KS ci ratio: 9.902981e-02	ci left: 6.904119e-02	ci right 7.628364e-02	k: 1452	n:20000
MAP3K5   20000 perm   5 sec   (3836 perm/sec)   p_kst 7.260000e-02   p_cons 8.962000e-01   p_joint 1.330000e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K5.6_4245_20000_0.0726_0.8962_0.133.png
                gene_name: MAP3K5
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 26 percent done.
MAP3K6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.327743e-02	ci left: 7.305765e-01	ci right 7.478839e-01	k: 7393	n:10000
Cons ci ratio: 4.154516e-02	ci left: 4.610765e-01	ci right 4.807405e-01	k: 4709	n:10000
KS ci ratio: 2.132144e-02	ci left: 7.633448e-01	ci right 7.798966e-01	k: 7717	n:10000
MAP3K6   10000 perm   2 sec   (4484 perm/sec)   p_kst 7.717000e-01   p_cons 4.709000e-01   p_joint 7.393000e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K6.6_3983_10000_0.7717_0.4709_0.7393.png
                gene_name: MAP3K6
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 28 percent done.
MARCH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.020807e-02	ci left: 2.886490e-01	ci right 3.066690e-01	k: 2976	n:10000
KS ci ratio: 7.831486e-03	ci left: 9.577516e-01	ci right 9.653765e-01	k: 9617	n:10000
MARCH6   10000 perm   2 sec   (4860 perm/sec)   p_kst 9.617000e-01   p_cons 2.976000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MARCH6.6_2837_10000_0.9617_0.2976_1.png
                gene_name: MARCH6
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
MARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.001785e-02	ci left: 4.797565e-01	ci right 4.994495e-01	k: 4896	n:10000
Cons ci ratio: 8.742056e-02	ci left: 1.600322e-01	ci right 1.747621e-01	k: 1673	n:10000
KS ci ratio: 8.943382e-03	ci left: 9.461696e-01	ci right 9.547655e-01	k: 9506	n:10000
MARS   10000 perm   2 sec   (4942 perm/sec)   p_kst 9.506000e-01   p_cons 1.673000e-01   p_joint 4.896000e-01

Outputting figure to mutsig2_images.part000000000102/MARS.6_2787_10000_0.9506_0.1673_0.4896.png
                gene_name: MARS
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 31 percent done.
MAST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.514284e-02	ci left: 4.200689e-01	ci right 4.395720e-01	k: 4298	n:10000
Cons ci ratio: 6.493302e-02	ci left: 2.583481e-01	ci right 2.757878e-01	k: 2670	n:10000
KS ci ratio: 9.312912e-02	ci left: 1.434464e-01	ci right 1.575578e-01	k: 1504	n:10000
MAST1   10000 perm   2 sec   (4137 perm/sec)   p_kst 1.504000e-01   p_cons 2.670000e-01   p_joint 4.298000e-01

Outputting figure to mutsig2_images.part000000000102/MAST1.6_4817_10000_0.1504_0.267_0.4298.png
                gene_name: MAST1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 32 percent done.
MAPK9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.169162e-03	ci left: 9.802710e-01	ci right 9.854422e-01	k: 9830	n:10000
Cons ci ratio: 1.933096e-02	ci left: 7.964874e-01	ci right 8.121349e-01	k: 8044	n:10000
KS ci ratio: 1.284443e-02	ci left: 8.971340e-01	ci right 9.088300e-01	k: 9031	n:10000
MAPK9   10000 perm   2 sec   (5047 perm/sec)   p_kst 9.031000e-01   p_cons 8.044000e-01   p_joint 9.830000e-01

Outputting figure to mutsig2_images.part000000000102/MAPK9.5_1441_10000_0.9031_0.8044_0.983.png
                gene_name: MAPK9
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 34 percent done.
MAPT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.707758e-02	ci left: 3.112576e-01	ci right 3.296471e-01	k: 3204	n:10000
Cons ci ratio: 3.764925e-02	ci left: 5.102534e-01	ci right 5.299348e-01	k: 5201	n:10000
KS ci ratio: 7.340334e-02	ci left: 2.136891e-01	ci right 2.300732e-01	k: 2218	n:10000
MAPT   10000 perm   2 sec   (5102 perm/sec)   p_kst 2.218000e-01   p_cons 5.201000e-01   p_joint 3.204000e-01

Outputting figure to mutsig2_images.part000000000102/MAPT.5_2387_10000_0.2218_0.5201_0.3204.png
                gene_name: MAPT
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 35 percent done.
MARK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.721333e-01	ci left: 4.504270e-02	ci right 5.362227e-02	k: 492	n:10000
Cons ci ratio: 3.389164e-01	ci left: 1.096414e-02	ci right 1.552595e-02	k: 131	n:10000
KS ci ratio: 4.261923e-02	ci left: 4.483979e-01	ci right 4.680265e-01	k: 4582	n:10000
MARK3   10000 perm   2 sec   (4933 perm/sec)   p_kst 4.582000e-01   p_cons 1.310000e-02   p_joint 4.920000e-02

Joint ci ratio: 1.069412e-01	ci left: 5.957399e-02	ci right 6.635376e-02	k: 1258	n:20000
Cons ci ratio: 2.396559e-01	ci left: 1.161730e-02	ci right 1.482653e-02	k: 263	n:20000
KS ci ratio: 3.020267e-02	ci left: 4.502276e-01	ci right 4.640848e-01	k: 9143	n:20000
MARK3   20000 perm   4 sec   (4519 perm/sec)   p_kst 4.571500e-01   p_cons 1.315000e-02   p_joint 6.290000e-02

Joint ci ratio: 7.316202e-02	ci left: 8.412923e-02	ci right 9.055095e-02	k: 2619	n:30000
Cons ci ratio: 1.974559e-01	ci left: 1.168546e-02	ci right 1.427680e-02	k: 388	n:30000
KS ci ratio: 2.463541e-02	ci left: 4.520167e-01	ci right 4.633248e-01	k: 13730	n:30000
MARK3   30000 perm   7 sec   (4342 perm/sec)   p_kst 4.576667e-01   p_cons 1.293333e-02   p_joint 8.730000e-02

Joint ci ratio: 6.895654e-02	ci left: 7.216660e-02	ci right 7.734533e-02	k: 2989	n:40000
Cons ci ratio: 1.735050e-01	ci left: 1.150599e-02	ci right 1.371561e-02	k: 503	n:40000
KS ci ratio: 2.137893e-02	ci left: 4.517593e-01	ci right 4.615470e-01	k: 18266	n:40000
MARK3   40000 perm   9 sec   (4220 perm/sec)   p_kst 4.566500e-01   p_cons 1.257500e-02   p_joint 7.472500e-02

Joint ci ratio: 8.476256e-02	ci left: 3.927863e-02	ci right 4.277491e-02	k: 2050	n:50000
Cons ci ratio: 1.574823e-01	ci left: 1.127539e-02	ci right 1.322185e-02	k: 611	n:50000
KS ci ratio: 1.844086e-02	ci left: 4.703146e-01	ci right 4.790884e-01	k: 23735	n:50000
MARK3   50000 perm   12 sec   (4117 perm/sec)   p_kst 4.747000e-01   p_cons 1.222000e-02   p_joint 4.100000e-02

Joint ci ratio: 6.853854e-02	ci left: 4.992529e-02	ci right 5.348490e-02	k: 3101	n:60000
Cons ci ratio: 1.450057e-01	ci left: 1.116015e-02	ci right 1.292085e-02	k: 721	n:60000
KS ci ratio: 1.684998e-02	ci left: 4.702309e-01	ci right 4.782383e-01	k: 28454	n:60000
MARK3   60000 perm   15 sec   (4027 perm/sec)   p_kst 4.742333e-01   p_cons 1.201667e-02   p_joint 5.168333e-02

Joint ci ratio: 5.639226e-02	ci left: 6.274762e-02	ci right 6.640286e-02	k: 4519	n:70000
Cons ci ratio: 1.321480e-01	ci left: 1.159333e-02	ci right 1.324745e-02	k: 868	n:70000
KS ci ratio: 1.559177e-02	ci left: 4.707948e-01	ci right 4.782073e-01	k: 33215	n:70000
MARK3   70000 perm   18 sec   (3945 perm/sec)   p_kst 4.745000e-01   p_cons 1.240000e-02   p_joint 6.455714e-02

Joint ci ratio: 5.275953e-02	ci left: 6.284443e-02	ci right 6.626224e-02	k: 5163	n:80000
Cons ci ratio: 1.232458e-01	ci left: 1.171734e-02	ci right 1.326831e-02	k: 998	n:80000
KS ci ratio: 1.456362e-02	ci left: 4.717592e-01	ci right 4.786926e-01	k: 38018	n:80000
MARK3   80000 perm   21 sec   (3873 perm/sec)   p_kst 4.752250e-01   p_cons 1.247500e-02   p_joint 6.453750e-02

Joint ci ratio: 4.984085e-02	ci left: 6.270600e-02	ci right 6.592216e-02	k: 5787	n:90000
Cons ci ratio: 1.155676e-01	ci left: 1.189226e-02	ci right 1.336162e-02	k: 1135	n:90000
KS ci ratio: 1.369752e-02	ci left: 4.731656e-01	ci right 4.797026e-01	k: 42879	n:90000
MARK3   90000 perm   24 sec   (3798 perm/sec)   p_kst 4.764333e-01   p_cons 1.261111e-02   p_joint 6.430000e-02

Joint ci ratio: 4.826982e-02	ci left: 6.037463e-02	ci right 6.337084e-02	k: 6186	n:100000
Cons ci ratio: 1.098233e-01	ci left: 1.188866e-02	ci right 1.327983e-02	k: 1257	n:100000
KS ci ratio: 1.301166e-02	ci left: 4.726804e-01	ci right 4.788810e-01	k: 47578	n:100000
MARK3   100000 perm   27 sec   (3730 perm/sec)   p_kst 4.757800e-01   p_cons 1.257000e-02   p_joint 6.186000e-02

Joint ci ratio: 4.902601e-02	ci left: 5.357908e-02	ci right 5.628081e-02	k: 6041	n:110000
Cons ci ratio: 1.042859e-01	ci left: 1.202003e-02	ci right 1.335130e-02	k: 1394	n:110000
KS ci ratio: 1.240973e-02	ci left: 4.726812e-01	ci right 4.785928e-01	k: 52320	n:110000
MARK3   110000 perm   30 sec   (3662 perm/sec)   p_kst 4.756364e-01   p_cons 1.267273e-02   p_joint 5.491818e-02

Joint ci ratio: 4.899111e-02	ci left: 4.940779e-02	ci right 5.189732e-02	k: 6077	n:120000
Cons ci ratio: 9.977377e-02	ci left: 1.206595e-02	ci right 1.334110e-02	k: 1523	n:120000
KS ci ratio: 1.187197e-02	ci left: 4.732041e-01	ci right 4.788638e-01	k: 57124	n:120000
MARK3   120000 perm   33 sec   (3602 perm/sec)   p_kst 4.760333e-01   p_cons 1.269167e-02   p_joint 5.064167e-02

Outputting figure to mutsig2_images.part000000000102/MARK3.5_2334_120000_0.47603_0.012692_0.050642.png
                gene_name: MARK3
               theta_stop: 0.100 
                    nperm: 120000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.052 

Current progress: 37 percent done.
MARVELD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.421708e-02	ci left: 5.577214e-01	ci right 5.772393e-01	k: 5675	n:10000
Cons ci ratio: 2.932725e-02	ci left: 6.316085e-01	ci right 6.505093e-01	k: 6411	n:10000
KS ci ratio: 4.679252e-02	ci left: 4.026288e-01	ci right 4.220223e-01	k: 4123	n:10000
MARVELD3   10000 perm   2 sec   (5642 perm/sec)   p_kst 4.123000e-01   p_cons 6.411000e-01   p_joint 5.675000e-01

Outputting figure to mutsig2_images.part000000000102/MARVELD3.5_1860_10000_0.4123_0.6411_0.5675.png
                gene_name: MARVELD3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 38 percent done.
MAST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.450658e-02	ci left: 3.315077e-01	ci right 3.501851e-01	k: 3408	n:10000
Cons ci ratio: 2.978118e-02	ci left: 6.244707e-01	ci right 6.434512e-01	k: 6340	n:10000
KS ci ratio: 7.568707e-02	ci left: 2.034324e-01	ci right 2.195360e-01	k: 2114	n:10000
MAST2   10000 perm   3 sec   (3712 perm/sec)   p_kst 2.114000e-01   p_cons 6.340000e-01   p_joint 3.408000e-01

Outputting figure to mutsig2_images.part000000000102/MAST2.5_5513_10000_0.2114_0.634_0.3408.png
                gene_name: MAST2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 40 percent done.
MAT1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.347016e-02	ci left: 4.386187e-01	ci right 4.582113e-01	k: 4484	n:10000
Cons ci ratio: 1.409920e-02	ci left: 8.790966e-01	ci right 8.916780e-01	k: 8855	n:10000
KS ci ratio: 6.698429e-02	ci left: 2.464796e-01	ci right 2.636633e-01	k: 2550	n:10000
MAT1A   10000 perm   2 sec   (5814 perm/sec)   p_kst 2.550000e-01   p_cons 8.855000e-01   p_joint 4.484000e-01

Outputting figure to mutsig2_images.part000000000102/MAT1A.5_1224_10000_0.255_0.8855_0.4484.png
                gene_name: MAT1A
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 41 percent done.
MAP3K11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.098128e-02	ci left: 9.220356e-01	ci right 9.323139e-01	k: 9273	n:10000
Cons ci ratio: 3.106476e-02	ci left: 6.045771e-01	ci right 6.237564e-01	k: 6142	n:10000
KS ci ratio: 1.473093e-02	ci left: 8.696873e-01	ci right 8.826927e-01	k: 8763	n:10000
MAP3K11   10000 perm   2 sec   (4885 perm/sec)   p_kst 8.763000e-01   p_cons 6.142000e-01   p_joint 9.273000e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K11.4_2584_10000_0.8763_0.6142_0.9273.png
                gene_name: MAP3K11
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 43 percent done.
MAP3K15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.599129e-02	ci left: 6.854671e-01	ci right 7.036194e-01	k: 6946	n:10000
Cons ci ratio: 2.531941e-02	ci left: 6.965581e-01	ci right 7.145221e-01	k: 7056	n:10000
KS ci ratio: 2.955702e-02	ci left: 6.279891e-01	ci right 6.469308e-01	k: 6375	n:10000
MAP3K15   10000 perm   2 sec   (4719 perm/sec)   p_kst 6.375000e-01   p_cons 7.056000e-01   p_joint 6.946000e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K15.4_4058_10000_0.6375_0.7056_0.6946.png
                gene_name: MAP3K15
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 44 percent done.
MAP3K7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.635936e-02	ci left: 6.794201e-01	ci right 6.976699e-01	k: 6886	n:10000
Cons ci ratio: 5.527957e-02	ci left: 3.252519e-01	ci right 3.438446e-01	k: 3345	n:10000
KS ci ratio: 2.902845e-02	ci left: 6.363347e-01	ci right 6.551803e-01	k: 6458	n:10000
MAP3K7   10000 perm   2 sec   (4851 perm/sec)   p_kst 6.458000e-01   p_cons 3.345000e-01   p_joint 6.886000e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K7.4_1889_10000_0.6458_0.3345_0.6886.png
                gene_name: MAP3K7
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 46 percent done.
MAP3K9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.103114e-02	ci left: 3.615207e-01	ci right 3.805545e-01	k: 3710	n:10000
Cons ci ratio: 8.837333e-02	ci left: 1.570859e-01	ci right 1.717101e-01	k: 1643	n:10000
KS ci ratio: 5.274675e-02	ci left: 3.463103e-01	ci right 3.651738e-01	k: 3557	n:10000
MAP3K9   10000 perm   2 sec   (4318 perm/sec)   p_kst 3.557000e-01   p_cons 1.643000e-01   p_joint 3.710000e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K9.4_3409_10000_0.3557_0.1643_0.371.png
                gene_name: MAP3K9
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 47 percent done.
MAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.161163e-02	ci left: 7.584861e-01	ci right 7.751582e-01	k: 7669	n:10000
Cons ci ratio: 3.523170e-02	ci left: 5.432913e-01	ci right 5.628777e-01	k: 5531	n:10000
KS ci ratio: 2.842204e-02	ci left: 6.459913e-01	ci right 6.647181e-01	k: 6554	n:10000
MAP4   10000 perm   2 sec   (4173 perm/sec)   p_kst 6.554000e-01   p_cons 5.531000e-01   p_joint 7.669000e-01

Outputting figure to mutsig2_images.part000000000102/MAP4.4_4902_10000_0.6554_0.5531_0.7669.png
                gene_name: MAP4
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 49 percent done.
MAP4K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.837333e-02	ci left: 1.570859e-01	ci right 1.717101e-01	k: 1643	n:10000
Cons ci ratio: 1.200103e-01	ci left: 9.058624e-02	ci right 1.022501e-01	k: 963	n:10000
KS ci ratio: 8.455437e-02	ci left: 1.693677e-01	ci right 1.844210e-01	k: 1768	n:10000
MAP4K3   10000 perm   2 sec   (5276 perm/sec)   p_kst 1.768000e-01   p_cons 9.630000e-02   p_joint 1.643000e-01

Joint ci ratio: 7.540047e-02	ci left: 1.145432e-01	ci right 1.235679e-01	k: 2380	n:20000
Cons ci ratio: 8.617888e-02	ci left: 8.969559e-02	ci right 9.782296e-02	k: 1874	n:20000
KS ci ratio: 5.996492e-02	ci left: 1.707446e-01	ci right 1.813498e-01	k: 3520	n:20000
MAP4K3   20000 perm   4 sec   (4734 perm/sec)   p_kst 1.760000e-01   p_cons 9.370000e-02   p_joint 1.190000e-01

Outputting figure to mutsig2_images.part000000000102/MAP4K3.4_2821_20000_0.176_0.0937_0.119.png
                gene_name: MAP4K3
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 50 percent done.
MARCH7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.133863e-02	ci left: 3.587363e-01	ci right 3.777405e-01	k: 3682	n:10000
Cons ci ratio: 7.108113e-02	ci left: 2.248418e-01	ci right 2.415139e-01	k: 2331	n:10000
KS ci ratio: 5.150451e-02	ci left: 3.572448e-01	ci right 3.762329e-01	k: 3667	n:10000
MARCH7   10000 perm   2 sec   (5349 perm/sec)   p_kst 3.667000e-01   p_cons 2.331000e-01   p_joint 3.682000e-01

Outputting figure to mutsig2_images.part000000000102/MARCH7.4_2151_10000_0.3667_0.2331_0.3682.png
                gene_name: MARCH7
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 51 percent done.
MARCH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.695073e-02	ci left: 8.352108e-01	ci right 8.495891e-01	k: 8425	n:10000
KS ci ratio: 1.051876e-02	ci left: 9.278190e-01	ci right 9.377271e-01	k: 9329	n:10000
MARCH8   10000 perm   2 sec   (6378 perm/sec)   p_kst 9.329000e-01   p_cons 8.425000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MARCH8.4_900_10000_0.9329_0.8425_1.png
                gene_name: MARCH8
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
MARK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.925331e-01	ci left: 3.595770e-02	ci right 4.371330e-02	k: 397	n:10000
Cons ci ratio: 9.679164e-02	ci left: 1.340383e-01	ci right 1.477716e-01	k: 1408	n:10000
KS ci ratio: 1.820645e-01	ci left: 4.025478e-02	ci right 4.841334e-02	k: 442	n:10000
MARK2   10000 perm   2 sec   (5168 perm/sec)   p_kst 4.420000e-02   p_cons 1.408000e-01   p_joint 3.970000e-02

Joint ci ratio: 1.284389e-01	ci left: 4.163516e-02	ci right 4.739821e-02	k: 889	n:20000
Cons ci ratio: 6.955317e-02	ci left: 1.322626e-01	ci right 1.418432e-01	k: 2740	n:20000
KS ci ratio: 1.239845e-01	ci left: 4.464158e-02	ci right 5.059083e-02	k: 951	n:20000
MARK2   20000 perm   4 sec   (4636 perm/sec)   p_kst 4.755000e-02   p_cons 1.370000e-01   p_joint 4.445000e-02

Joint ci ratio: 1.102994e-01	ci left: 3.816745e-02	ci right 4.265545e-02	k: 1211	n:30000
Cons ci ratio: 5.640533e-02	ci left: 1.347414e-01	ci right 1.425953e-01	k: 4159	n:30000
KS ci ratio: 1.015702e-01	ci left: 4.489262e-02	ci right 4.972887e-02	k: 1418	n:30000
MARK2   30000 perm   7 sec   (4424 perm/sec)   p_kst 4.726667e-02   p_cons 1.386333e-01   p_joint 4.036667e-02

Joint ci ratio: 9.130526e-02	ci left: 4.203522e-02	ci right 4.608130e-02	k: 1761	n:40000
Cons ci ratio: 4.757954e-02	ci left: 1.416123e-01	ci right 1.485393e-01	k: 5802	n:40000
KS ci ratio: 8.759885e-02	ci left: 4.558280e-02	ci right 4.978318e-02	k: 1906	n:40000
MARK2   40000 perm   9 sec   (4278 perm/sec)   p_kst 4.765000e-02   p_cons 1.450500e-01   p_joint 4.402500e-02

Outputting figure to mutsig2_images.part000000000102/MARK2.4_2443_40000_0.04765_0.14505_0.044025.png
                gene_name: MARK2
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 54 percent done.
MARK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.739590e-02	ci left: 1.325692e-01	ci right 1.462416e-01	k: 1393	n:10000
Cons ci ratio: 9.349504e-02	ci left: 1.424659e-01	ci right 1.565389e-01	k: 1494	n:10000
KS ci ratio: 8.051746e-02	ci left: 1.838286e-01	ci right 1.993515e-01	k: 1915	n:10000
MARK4   10000 perm   2 sec   (5520 perm/sec)   p_kst 1.915000e-01   p_cons 1.494000e-01   p_joint 1.393000e-01

Outputting figure to mutsig2_images.part000000000102/MARK4.4_2139_10000_0.1915_0.1494_0.1393.png
                gene_name: MARK4
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.15 

Current progress: 56 percent done.
MAS1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.892472e-02	ci left: 8.031864e-01	ci right 8.186320e-01	k: 8110	n:10000
KS ci ratio: 1.213559e-02	ci left: 9.068938e-01	ci right 9.180646e-01	k: 9126	n:10000
MAS1L   10000 perm   2 sec   (5464 perm/sec)   p_kst 9.126000e-01   p_cons 8.110000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAS1L.4_1141_10000_0.9126_0.811_1.png
                gene_name: MAS1L
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
MASP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.658081e-02	ci left: 6.757928e-01	ci right 6.940994e-01	k: 6850	n:10000
Cons ci ratio: 2.069749e-02	ci left: 7.737760e-01	ci right 7.900594e-01	k: 7820	n:10000
KS ci ratio: 4.105657e-02	ci left: 4.669687e-01	ci right 4.866448e-01	k: 4768	n:10000
MASP2   10000 perm   2 sec   (5275 perm/sec)   p_kst 4.768000e-01   p_cons 7.820000e-01   p_joint 6.850000e-01

Outputting figure to mutsig2_images.part000000000102/MASP2.4_2123_10000_0.4768_0.782_0.685.png
                gene_name: MASP2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 59 percent done.
MAST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.452535e-02	ci left: 1.694660e-01	ci right 1.845227e-01	k: 1769	n:10000
Cons ci ratio: 2.289119e-02	ci left: 7.370442e-01	ci right 7.542125e-01	k: 7457	n:10000
KS ci ratio: 1.572531e-01	ci left: 5.388306e-02	ci right 6.317620e-02	k: 584	n:10000
MAST3   10000 perm   2 sec   (4664 perm/sec)   p_kst 5.840000e-02   p_cons 7.457000e-01   p_joint 1.769000e-01

Joint ci ratio: 7.449765e-02	ci left: 1.170516e-01	ci right 1.261587e-01	k: 2431	n:20000
Cons ci ratio: 1.605867e-02	ci left: 7.426276e-01	ci right 7.547000e-01	k: 14974	n:20000
KS ci ratio: 1.126881e-01	ci left: 5.382647e-02	ci right 6.030306e-02	k: 1140	n:20000
MAST3   20000 perm   5 sec   (4219 perm/sec)   p_kst 5.700000e-02   p_cons 7.487000e-01   p_joint 1.215500e-01

Joint ci ratio: 6.457325e-02	ci left: 1.058563e-01	ci right 1.129529e-01	k: 3281	n:30000
Cons ci ratio: 1.309679e-02	ci left: 7.441871e-01	ci right 7.540313e-01	k: 22474	n:30000
KS ci ratio: 8.942081e-02	ci left: 5.750183e-02	ci right 6.291706e-02	k: 1805	n:30000
MAST3   30000 perm   7 sec   (4040 perm/sec)   p_kst 6.016667e-02   p_cons 7.491333e-01   p_joint 1.093667e-01

Outputting figure to mutsig2_images.part000000000102/MAST3.4_4038_30000_0.060167_0.74913_0.10937.png
                gene_name: MAST3
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 60 percent done.
MAP2K6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
Cons ci ratio: 6.816792e-02	ci left: 2.399555e-01	ci right 2.569912e-01	k: 2484	n:10000
KS ci ratio: 1.799496e-01	ci left: 4.121131e-02	ci right 4.945618e-02	k: 452	n:10000
MAP2K6   10000 perm   2 sec   (6076 perm/sec)   p_kst 4.520000e-02   p_cons 2.484000e-01   p_joint 6.190000e-02

Joint ci ratio: 9.891973e-02	ci left: 6.918775e-02	ci right 7.643704e-02	k: 1455	n:20000
Cons ci ratio: 4.766641e-02	ci left: 2.466391e-01	ci right 2.587329e-01	k: 5053	n:20000
KS ci ratio: 1.291237e-01	ci left: 4.119905e-02	ci right 4.693445e-02	k: 880	n:20000
MAP2K6   20000 perm   4 sec   (5265 perm/sec)   p_kst 4.400000e-02   p_cons 2.526500e-01   p_joint 7.275000e-02

Joint ci ratio: 8.319703e-02	ci left: 6.602637e-02	ci right 7.179079e-02	k: 2066	n:30000
Cons ci ratio: 3.929059e-02	ci left: 2.442138e-01	ci right 2.540348e-01	k: 7473	n:30000
KS ci ratio: 1.053257e-01	ci left: 4.180424e-02	ci right 4.648456e-02	k: 1323	n:30000
MAP2K6   30000 perm   6 sec   (5062 perm/sec)   p_kst 4.410000e-02   p_cons 2.491000e-01   p_joint 6.886667e-02

Joint ci ratio: 7.966488e-02	ci left: 5.479677e-02	ci right 5.936780e-02	k: 2282	n:40000
Cons ci ratio: 3.522355e-02	ci left: 2.322431e-01	ci right 2.405952e-01	k: 9456	n:40000
KS ci ratio: 9.160477e-02	ci left: 4.176625e-02	ci right 4.580032e-02	k: 1750	n:40000
MAP2K6   40000 perm   8 sec   (4889 perm/sec)   p_kst 4.375000e-02   p_cons 2.364000e-01   p_joint 5.705000e-02

Outputting figure to mutsig2_images.part000000000102/MAP2K6.3_1053_40000_0.04375_0.2364_0.05705.png
                gene_name: MAP2K6
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.059 

Current progress: 62 percent done.
MAP3K10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.178575e-01	ci left: 9.370045e-02	ci right 1.055340e-01	k: 995	n:10000
Cons ci ratio: 9.764019e-02	ci left: 1.319816e-01	ci right 1.456295e-01	k: 1387	n:10000
KS ci ratio: 1.648733e-01	ci left: 4.907401e-02	ci right 5.798834e-02	k: 534	n:10000
MAP3K10   10000 perm   2 sec   (5054 perm/sec)   p_kst 5.340000e-02   p_cons 1.387000e-01   p_joint 9.950000e-02

Joint ci ratio: 1.159005e-01	ci left: 5.095625e-02	ci right 5.727417e-02	k: 1081	n:20000
Cons ci ratio: 6.785568e-02	ci left: 1.381262e-01	ci right 1.478779e-01	k: 2859	n:20000
KS ci ratio: 1.188925e-01	ci left: 4.847732e-02	ci right 5.465388e-02	k: 1030	n:20000
MAP3K10   20000 perm   4 sec   (4604 perm/sec)   p_kst 5.150000e-02   p_cons 1.429500e-01   p_joint 5.405000e-02

Joint ci ratio: 1.266021e-01	ci left: 2.900300e-02	ci right 3.295519e-02	k: 928	n:30000
Cons ci ratio: 5.718168e-02	ci left: 1.315470e-01	ci right 1.393237e-01	k: 4062	n:30000
KS ci ratio: 9.689447e-02	ci left: 4.922128e-02	ci right 5.426598e-02	k: 1551	n:30000
MAP3K10   30000 perm   7 sec   (4404 perm/sec)   p_kst 5.170000e-02   p_cons 1.354000e-01   p_joint 3.093333e-02

Joint ci ratio: 8.079701e-02	ci left: 5.332517e-02	ci right 5.783962e-02	k: 2222	n:40000
Cons ci ratio: 4.978343e-02	ci left: 1.308490e-01	ci right 1.375542e-01	k: 5367	n:40000
KS ci ratio: 8.527649e-02	ci left: 4.803137e-02	ci right 5.233424e-02	k: 2006	n:40000
MAP3K10   40000 perm   9 sec   (4273 perm/sec)   p_kst 5.015000e-02   p_cons 1.341750e-01   p_joint 5.555000e-02

Outputting figure to mutsig2_images.part000000000102/MAP3K10.3_2905_40000_0.05015_0.13417_0.05555.png
                gene_name: MAP3K10
               theta_stop: 0.085 
                    nperm: 40000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.058 

Current progress: 63 percent done.
MAP3K14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.618968e-02	ci left: 5.299709e-01	ci right 5.496059e-01	k: 5398	n:10000
KS ci ratio: 2.825866e-02	ci left: 6.486074e-01	ci right 6.673005e-01	k: 6580	n:10000
MAP3K14   10000 perm   2 sec   (5013 perm/sec)   p_kst 6.580000e-01   p_cons 5.398000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAP3K14.3_2903_10000_0.658_0.5398_1.png
                gene_name: MAP3K14
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
MAP3K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.755301e-02	ci left: 2.433161e-01	ci right 2.604287e-01	k: 2518	n:10000
Cons ci ratio: 1.504163e-02	ci left: 8.649871e-01	ci right 8.781956e-01	k: 8717	n:10000
KS ci ratio: 1.100425e-01	ci left: 1.063704e-01	ci right 1.188563e-01	k: 1125	n:10000
MAP3K2   10000 perm   2 sec   (5168 perm/sec)   p_kst 1.125000e-01   p_cons 8.717000e-01   p_joint 2.518000e-01

Joint ci ratio: 6.340416e-02	ci left: 1.553387e-01	ci right 1.655602e-01	k: 3208	n:20000
Cons ci ratio: 1.055174e-02	ci left: 8.687630e-01	ci right 8.780282e-01	k: 17469	n:20000
KS ci ratio: 7.668576e-02	ci left: 1.111014e-01	ci right 1.200107e-01	k: 2310	n:20000
MAP3K2   20000 perm   4 sec   (4752 perm/sec)   p_kst 1.155000e-01   p_cons 8.734500e-01   p_joint 1.604000e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K2.3_1924_20000_0.1155_0.87345_0.1604.png
                gene_name: MAP3K2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 66 percent done.
MAP3K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.753382e-02	ci left: 6.602828e-01	ci right 6.788183e-01	k: 6696	n:10000
KS ci ratio: 1.590375e-02	ci left: 8.517184e-01	ci right 8.654720e-01	k: 8587	n:10000
MAP3K3   10000 perm   2 sec   (5136 perm/sec)   p_kst 8.587000e-01   p_cons 6.696000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAP3K3.3_2042_10000_0.8587_0.6696_1.png
                gene_name: MAP3K3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
MAP4K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.260207e-02	ci left: 4.485975e-01	ci right 4.682268e-01	k: 4584	n:10000
Cons ci ratio: 8.380712e-02	ci left: 1.719241e-01	ci right 1.870631e-01	k: 1794	n:10000
KS ci ratio: 3.818054e-02	ci left: 5.032509e-01	ci right 5.229414e-01	k: 5131	n:10000
MAP4K1   10000 perm   2 sec   (5073 perm/sec)   p_kst 5.131000e-01   p_cons 1.794000e-01   p_joint 4.584000e-01

Outputting figure to mutsig2_images.part000000000102/MAP4K1.3_2692_10000_0.5131_0.1794_0.4584.png
                gene_name: MAP4K1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 69 percent done.
MAP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.788368e-02	ci left: 5.071521e-01	ci right 5.268380e-01	k: 5170	n:10000
KS ci ratio: 3.589212e-02	ci left: 5.340764e-01	ci right 5.536980e-01	k: 5439	n:10000
MAP9   10000 perm   2 sec   (5435 perm/sec)   p_kst 5.439000e-01   p_cons 5.170000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAP9.3_1996_10000_0.5439_0.517_1.png
                gene_name: MAP9
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
MAPK14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.497068e-02	ci left: 3.277341e-01	ci right 3.463609e-01	k: 3370	n:10000
Cons ci ratio: 2.447923e-01	ci left: 2.193497e-02	ci right 2.814593e-02	k: 249	n:10000
KS ci ratio: 4.317267e-02	ci left: 4.420111e-01	ci right 4.616170e-01	k: 4518	n:10000
MAPK14   10000 perm   2 sec   (6175 perm/sec)   p_kst 4.518000e-01   p_cons 2.490000e-02   p_joint 3.370000e-01

Joint ci ratio: 3.760457e-02	ci left: 3.453779e-01	ci right 3.586651e-01	k: 7040	n:20000
Cons ci ratio: 1.703237e-01	ci left: 2.359904e-02	ci right 2.804027e-02	k: 515	n:20000
KS ci ratio: 3.080911e-02	ci left: 4.403922e-01	ci right 4.542232e-01	k: 8946	n:20000
MAPK14   20000 perm   4 sec   (5176 perm/sec)   p_kst 4.473000e-01   p_cons 2.575000e-02   p_joint 3.520000e-01

Joint ci ratio: 3.207881e-02	ci left: 3.269696e-01	ci right 3.376629e-01	k: 9969	n:30000
Cons ci ratio: 1.362065e-01	ci left: 2.503400e-02	ci right 2.872506e-02	k: 805	n:30000
KS ci ratio: 2.518510e-02	ci left: 4.410963e-01	ci right 4.523807e-01	k: 13402	n:30000
MAPK14   30000 perm   6 sec   (4877 perm/sec)   p_kst 4.467333e-01   p_cons 2.683333e-02   p_joint 3.323000e-01

Joint ci ratio: 2.788678e-02	ci left: 3.260147e-01	ci right 3.352599e-01	k: 13225	n:40000
Cons ci ratio: 1.193741e-01	ci left: 2.468092e-02	ci right 2.783836e-02	k: 1049	n:40000
KS ci ratio: 2.183369e-02	ci left: 4.413451e-01	ci right 4.511127e-01	k: 17849	n:40000
MAPK14   40000 perm   8 sec   (4718 perm/sec)   p_kst 4.462250e-01   p_cons 2.622500e-02   p_joint 3.306250e-01

Joint ci ratio: 2.630924e-02	ci left: 3.034166e-01	ci right 3.115257e-01	k: 15373	n:50000
Cons ci ratio: 1.073824e-01	ci left: 2.456429e-02	ci right 2.737112e-02	k: 1297	n:50000
KS ci ratio: 1.951953e-02	ci left: 4.420958e-01	ci right 4.508304e-01	k: 22323	n:50000
MAPK14   50000 perm   11 sec   (4591 perm/sec)   p_kst 4.464600e-01   p_cons 2.594000e-02   p_joint 3.074600e-01

Joint ci ratio: 2.171177e-02	ci left: 3.481940e-01	ci right 3.558536e-01	k: 21121	n:60000
Cons ci ratio: 9.788456e-02	ci left: 2.475758e-02	ci right 2.732188e-02	k: 1561	n:60000
KS ci ratio: 1.782468e-02	ci left: 4.423167e-01	ci right 4.502885e-01	k: 26778	n:60000
MAPK14   60000 perm   13 sec   (4463 perm/sec)   p_kst 4.463000e-01   p_cons 2.601667e-02   p_joint 3.520167e-01

Outputting figure to mutsig2_images.part000000000102/MAPK14.3_1268_60000_0.4463_0.026017_0.35202.png
                gene_name: MAPK14
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 72 percent done.
MAPK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.866090e-02	ci left: 2.995534e-01	ci right 3.177582e-01	k: 3086	n:10000
Cons ci ratio: 2.058238e-01	ci left: 3.138896e-02	ci right 3.868516e-02	k: 349	n:10000
KS ci ratio: 1.034997e-02	ci left: 9.298868e-01	ci right 9.396581e-01	k: 9349	n:10000
MAPK3   10000 perm   2 sec   (5725 perm/sec)   p_kst 9.349000e-01   p_cons 3.490000e-02   p_joint 3.086000e-01

Joint ci ratio: 9.936204e-02	ci left: 6.860155e-02	ci right 7.582341e-02	k: 1443	n:20000
Cons ci ratio: 1.824882e-01	ci left: 2.048931e-02	ci right 2.465110e-02	k: 450	n:20000
KS ci ratio: 7.283378e-03	ci left: 9.319557e-01	ci right 9.388171e-01	k: 18709	n:20000
MAPK3   20000 perm   4 sec   (5155 perm/sec)   p_kst 9.354500e-01   p_cons 2.250000e-02   p_joint 7.215000e-02

Joint ci ratio: 7.218519e-02	ci left: 8.626013e-02	ci right 9.275295e-02	k: 2684	n:30000
Cons ci ratio: 1.489458e-01	ci left: 2.088364e-02	ci right 2.427636e-02	k: 676	n:30000
KS ci ratio: 6.098243e-03	ci left: 9.294323e-01	ci right 9.351503e-01	k: 27970	n:30000
MAPK3   30000 perm   6 sec   (4714 perm/sec)   p_kst 9.323333e-01   p_cons 2.253333e-02   p_joint 8.946667e-02

Joint ci ratio: 6.911907e-02	ci left: 7.184679e-02	ci right 7.701520e-02	k: 2976	n:40000
Cons ci ratio: 1.306041e-01	ci left: 2.058481e-02	ci right 2.348516e-02	k: 880	n:40000
KS ci ratio: 5.280300e-03	ci left: 9.298448e-01	ci right 9.347922e-01	k: 37294	n:40000
MAPK3   40000 perm   9 sec   (4604 perm/sec)   p_kst 9.323500e-01   p_cons 2.200000e-02   p_joint 7.440000e-02

Joint ci ratio: 5.013691e-02	ci left: 1.062021e-01	ci right 1.116834e-01	k: 5446	n:50000
Cons ci ratio: 1.164517e-01	ci left: 2.086809e-02	ci right 2.346779e-02	k: 1107	n:50000
KS ci ratio: 4.698344e-03	ci left: 9.307733e-01	ci right 9.351763e-01	k: 46650	n:50000
MAPK3   50000 perm   11 sec   (4508 perm/sec)   p_kst 9.330000e-01   p_cons 2.214000e-02   p_joint 1.089200e-01

Joint ci ratio: 4.595183e-02	ci left: 1.056756e-01	ci right 1.106623e-01	k: 6489	n:60000
Cons ci ratio: 1.072833e-01	ci left: 2.059769e-02	ci right 2.294888e-02	k: 1305	n:60000
KS ci ratio: 4.278605e-03	ci left: 9.312742e-01	ci right 9.352837e-01	k: 55998	n:60000
MAPK3   60000 perm   14 sec   (4419 perm/sec)   p_kst 9.333000e-01   p_cons 2.175000e-02   p_joint 1.081500e-01

Joint ci ratio: 4.279604e-02	ci left: 1.047334e-01	ci right 1.093278e-01	k: 7491	n:70000
Cons ci ratio: 9.968245e-02	ci left: 2.053580e-02	ci right 2.270411e-02	k: 1512	n:70000
KS ci ratio: 3.951161e-03	ci left: 9.317449e-01	ci right 9.354477e-01	k: 65353	n:70000
MAPK3   70000 perm   16 sec   (4342 perm/sec)   p_kst 9.336143e-01   p_cons 2.160000e-02   p_joint 1.070143e-01

Outputting figure to mutsig2_images.part000000000102/MAPK3.3_1229_70000_0.93361_0.0216_0.10701.png
                gene_name: MAPK3
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 74 percent done.
MAPK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.884302e-02	ci left: 4.946505e-01	ci right 5.143469e-01	k: 5045	n:10000
Cons ci ratio: 8.931779e-02	ci left: 1.542387e-01	ci right 1.687591e-01	k: 1614	n:10000
KS ci ratio: 3.079018e-02	ci left: 6.087955e-01	ci right 6.279355e-01	k: 6184	n:10000
MAPK6   10000 perm   2 sec   (5382 perm/sec)   p_kst 6.184000e-01   p_cons 1.614000e-01   p_joint 5.045000e-01

Outputting figure to mutsig2_images.part000000000102/MAPK6.3_2186_10000_0.6184_0.1614_0.5045.png
                gene_name: MAPK6
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 75 percent done.
MAPK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.673487e-02	ci left: 6.732741e-01	ci right 6.916195e-01	k: 6825	n:10000
KS ci ratio: 2.118833e-02	ci left: 7.655723e-01	ci right 7.820679e-01	k: 7739	n:10000
MAPK7   10000 perm   2 sec   (5778 perm/sec)   p_kst 7.739000e-01   p_cons 6.825000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAPK7.3_2475_10000_0.7739_0.6825_1.png
                gene_name: MAPK7
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
MAPKAPK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.036624e-01	ci left: 1.185779e-01	ci right 1.316413e-01	k: 1250	n:10000
Cons ci ratio: 3.364905e-02	ci left: 5.659423e-01	ci right 5.854136e-01	k: 5757	n:10000
KS ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
MAPKAPK2   10000 perm   2 sec   (5871 perm/sec)   p_kst 1.309000e-01   p_cons 5.757000e-01   p_joint 1.250000e-01

Joint ci ratio: 6.947976e-02	ci left: 1.325089e-01	ci right 1.420968e-01	k: 2745	n:20000
Cons ci ratio: 2.406135e-02	ci left: 5.633544e-01	ci right 5.771252e-01	k: 11405	n:20000
KS ci ratio: 7.100076e-02	ci left: 1.275345e-01	ci right 1.369727e-01	k: 2644	n:20000
MAPKAPK2   20000 perm   4 sec   (5235 perm/sec)   p_kst 1.322000e-01   p_cons 5.702500e-01   p_joint 1.372500e-01

Outputting figure to mutsig2_images.part000000000102/MAPKAPK2.3_1301_20000_0.1322_0.57025_0.13725.png
                gene_name: MAPKAPK2
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 78 percent done.
MAPRE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.567447e-02	ci left: 1.656325e-01	ci right 1.805584e-01	k: 1730	n:10000
Cons ci ratio: 7.582348e-02	ci left: 2.028409e-01	ci right 2.189279e-01	k: 2108	n:10000
KS ci ratio: 7.463647e-02	ci left: 2.080667e-01	ci right 2.242990e-01	k: 2161	n:10000
MAPRE2   10000 perm   2 sec   (5712 perm/sec)   p_kst 2.161000e-01   p_cons 2.108000e-01   p_joint 1.730000e-01

Outputting figure to mutsig2_images.part000000000102/MAPRE2.3_1106_10000_0.2161_0.2108_0.173.png
                gene_name: MAPRE2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 79 percent done.
MARCKSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.426972e-02	ci left: 4.296413e-01	ci right 4.491941e-01	k: 4394	n:10000
Cons ci ratio: 8.067374e-02	ci left: 1.832380e-01	ci right 1.987424e-01	k: 1909	n:10000
KS ci ratio: 5.551626e-02	ci left: 3.233656e-01	ci right 3.419320e-01	k: 3326	n:10000
MARCKSL1   10000 perm   2 sec   (6290 perm/sec)   p_kst 3.326000e-01   p_cons 1.909000e-01   p_joint 4.394000e-01

Outputting figure to mutsig2_images.part000000000102/MARCKSL1.3_596_10000_0.3326_0.1909_0.4394.png
                gene_name: MARCKSL1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 81 percent done.
MARVELD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.652740e-02	ci left: 8.419327e-01	ci right 8.560633e-01	k: 8491	n:10000
Cons ci ratio: 3.943783e-02	ci left: 4.870525e-01	ci right 5.067493e-01	k: 4969	n:10000
KS ci ratio: 1.257135e-02	ci left: 9.009330e-01	ci right 9.124288e-01	k: 9068	n:10000
MARVELD2   10000 perm   2 sec   (5602 perm/sec)   p_kst 9.068000e-01   p_cons 4.969000e-01   p_joint 8.491000e-01

Outputting figure to mutsig2_images.part000000000102/MARVELD2.3_1701_10000_0.9068_0.4969_0.8491.png
                gene_name: MARVELD2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 82 percent done.
MAP3K8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.324248e-02	ci left: 1.738909e-01	ci right 1.890951e-01	k: 1814	n:10000
Cons ci ratio: 1.617042e-01	ci left: 5.099641e-02	ci right 6.006470e-02	k: 554	n:10000
KS ci ratio: 1.433170e-01	ci left: 6.459169e-02	ci right 7.466078e-02	k: 695	n:10000
MAP3K8   10000 perm   2 sec   (6575 perm/sec)   p_kst 6.950000e-02   p_cons 5.540000e-02   p_joint 1.814000e-01

Joint ci ratio: 5.893157e-02	ci left: 1.757845e-01	ci right 1.865084e-01	k: 3622	n:20000
Cons ci ratio: 1.177528e-01	ci left: 4.940061e-02	ci right 5.563030e-02	k: 1049	n:20000
KS ci ratio: 1.014602e-01	ci left: 6.591574e-02	ci right 7.301005e-02	k: 1388	n:20000
MAP3K8   20000 perm   4 sec   (5714 perm/sec)   p_kst 6.940000e-02   p_cons 5.245000e-02   p_joint 1.811000e-01

Joint ci ratio: 6.371545e-02	ci left: 1.084524e-01	ci right 1.156229e-01	k: 3360	n:30000
Cons ci ratio: 9.500496e-02	ci left: 5.114319e-02	ci right 5.627700e-02	k: 1610	n:30000
KS ci ratio: 8.253425e-02	ci left: 6.703978e-02	ci right 7.284384e-02	k: 2097	n:30000
MAP3K8   30000 perm   6 sec   (5361 perm/sec)   p_kst 6.990000e-02   p_cons 5.366667e-02   p_joint 1.120000e-01

Outputting figure to mutsig2_images.part000000000102/MAP3K8.2_1432_30000_0.0699_0.053667_0.112.png
                gene_name: MAP3K8
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 84 percent done.
MAP4K5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.273648e-03	ci left: 9.630998e-01	ci right 9.702249e-01	k: 9668	n:10000
Cons ci ratio: 4.429668e-02	ci left: 4.293421e-01	ci right 4.488934e-01	k: 4391	n:10000
KS ci ratio: 7.318717e-03	ci left: 9.626796e-01	ci right 9.698454e-01	k: 9664	n:10000
MAP4K5   10000 perm   2 sec   (5435 perm/sec)   p_kst 9.664000e-01   p_cons 4.391000e-01   p_joint 9.668000e-01

Outputting figure to mutsig2_images.part000000000102/MAP4K5.2_2665_10000_0.9664_0.4391_0.9668.png
                gene_name: MAP4K5
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 85 percent done.
MAP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.038162e-02	ci left: 7.790450e-01	ci right 7.951874e-01	k: 7872	n:10000
Cons ci ratio: 2.336195e-02	ci left: 7.291621e-01	ci right 7.464992e-01	k: 7379	n:10000
KS ci ratio: 4.319010e-02	ci left: 4.418115e-01	ci right 4.614167e-01	k: 4516	n:10000
MAP6   10000 perm   2 sec   (5364 perm/sec)   p_kst 4.516000e-01   p_cons 7.379000e-01   p_joint 7.872000e-01

Outputting figure to mutsig2_images.part000000000102/MAP6.2_2462_10000_0.4516_0.7379_0.7872.png
                gene_name: MAP6
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 87 percent done.
MAPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.563685e-02	ci left: 2.541932e-01	ci right 2.715451e-01	k: 2628	n:10000
KS ci ratio: 1.736385e-02	ci left: 8.285951e-01	ci right 8.432086e-01	k: 8360	n:10000
MAPK1   10000 perm   2 sec   (6099 perm/sec)   p_kst 8.360000e-01   p_cons 2.628000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAPK1.2_1115_10000_0.836_0.2628_1.png
                gene_name: MAPK1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
MAPK12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.631022e-02	ci left: 6.802263e-01	ci right 6.984633e-01	k: 6894	n:10000
KS ci ratio: 5.213117e-02	ci left: 3.516775e-01	ci right 3.706035e-01	k: 3611	n:10000
MAPK12   10000 perm   2 sec   (6304 perm/sec)   p_kst 3.611000e-01   p_cons 6.894000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAPK12.2_1152_10000_0.3611_0.6894_1.png
                gene_name: MAPK12
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
MAPK8IP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.792043e-02	ci left: 6.540417e-01	ci right 6.726631e-01	k: 6634	n:10000
Cons ci ratio: 5.640311e-02	ci left: 3.164175e-01	ci right 3.348842e-01	k: 3256	n:10000
KS ci ratio: 3.060133e-02	ci left: 6.117087e-01	ci right 6.308206e-01	k: 6213	n:10000
MAPK8IP1   10000 perm   2 sec   (5297 perm/sec)   p_kst 6.213000e-01   p_cons 3.256000e-01   p_joint 6.634000e-01

Outputting figure to mutsig2_images.part000000000102/MAPK8IP1.2_2184_10000_0.6213_0.3256_0.6634.png
                gene_name: MAPK8IP1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 91 percent done.
MAPK8IP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.143030e-02	ci left: 7.615226e-01	ci right 7.781199e-01	k: 7699	n:10000
KS ci ratio: 2.460821e-02	ci left: 7.083616e-01	ci right 7.261116e-01	k: 7173	n:10000
MAPK8IP3   10000 perm   2 sec   (4885 perm/sec)   p_kst 7.173000e-01   p_cons 7.699000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000102/MAPK8IP3.2_4155_10000_0.7173_0.7699_1.png
                gene_name: MAPK8IP3
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
MAPKAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.037554e-02	ci left: 7.791464e-01	ci right 7.952860e-01	k: 7873	n:10000
Cons ci ratio: 3.572608e-02	ci left: 5.363798e-01	ci right 5.559932e-01	k: 5462	n:10000
KS ci ratio: 2.606481e-02	ci left: 6.842576e-01	ci right 7.024297e-01	k: 6934	n:10000
MAPKAP1   10000 perm   2 sec   (6030 perm/sec)   p_kst 6.934000e-01   p_cons 5.462000e-01   p_joint 7.873000e-01

Outputting figure to mutsig2_images.part000000000102/MAPKAP1.2_1631_10000_0.6934_0.5462_0.7873.png
                gene_name: MAPKAP1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 94 percent done.
MAPRE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.185929e-02	ci left: 7.543371e-01	ci right 7.711095e-01	k: 7628	n:10000
Cons ci ratio: 5.377486e-02	ci left: 3.375666e-01	ci right 3.563226e-01	k: 3469	n:10000
KS ci ratio: 3.808897e-02	ci left: 5.044512e-01	ci right 5.241404e-01	k: 5143	n:10000
MAPRE3   10000 perm   2 sec   (6468 perm/sec)   p_kst 5.143000e-01   p_cons 3.469000e-01   p_joint 7.628000e-01

Outputting figure to mutsig2_images.part000000000102/MAPRE3.2_870_10000_0.5143_0.3469_0.7628.png
                gene_name: MAPRE3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 96 percent done.
MARCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.965940e-02	ci left: 6.263806e-01	ci right 6.453402e-01	k: 6359	n:10000
Cons ci ratio: 4.827181e-02	ci left: 3.876902e-01	ci right 4.069696e-01	k: 3973	n:10000
KS ci ratio: 1.301200e-01	ci left: 7.776183e-02	ci right 8.868240e-02	k: 831	n:10000
MARCH1   10000 perm   2 sec   (6425 perm/sec)   p_kst 8.310000e-02   p_cons 3.973000e-01   p_joint 6.359000e-01

Joint ci ratio: 2.090318e-02	ci left: 6.307429e-01	ci right 6.441172e-01	k: 12749	n:20000
Cons ci ratio: 3.405835e-02	ci left: 3.916052e-01	ci right 4.052243e-01	k: 7968	n:20000
KS ci ratio: 8.928718e-02	ci left: 8.396194e-02	ci right 9.185834e-02	k: 1757	n:20000
MARCH1   20000 perm   4 sec   (5586 perm/sec)   p_kst 8.785000e-02   p_cons 3.984000e-01   p_joint 6.374500e-01

Outputting figure to mutsig2_images.part000000000102/MARCH1.2_1005_20000_0.08785_0.3984_0.63745.png
                gene_name: MARCH1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 97 percent done.
MARCH9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.008195e-02	ci left: 4.789571e-01	ci right 4.986494e-01	k: 4888	n:10000
Cons ci ratio: 4.159520e-02	ci left: 4.604773e-01	ci right 4.801400e-01	k: 4703	n:10000
KS ci ratio: 3.051687e-02	ci left: 6.130147e-01	ci right 6.321138e-01	k: 6226	n:10000
MARCH9   10000 perm   2 sec   (6472 perm/sec)   p_kst 6.226000e-01   p_cons 4.703000e-01   p_joint 4.888000e-01

Outputting figure to mutsig2_images.part000000000102/MARCH9.2_1057_10000_0.6226_0.4703_0.4888.png
                gene_name: MARCH9
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 99 percent done.
MAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.271427e-01	ci left: 8.125571e-02	ci right 9.238637e-02	k: 867	n:10000
Cons ci ratio: 1.246431e-01	ci left: 8.436377e-02	ci right 9.567638e-02	k: 899	n:10000
KS ci ratio: 6.724969e-02	ci left: 2.449966e-01	ci right 2.621471e-01	k: 2535	n:10000
MAS1   10000 perm   2 sec   (6567 perm/sec)   p_kst 2.535000e-01   p_cons 8.990000e-02   p_joint 8.670000e-02

Joint ci ratio: 7.020755e-02	ci left: 1.300953e-01	ci right 1.396111e-01	k: 2696	n:20000
Cons ci ratio: 8.600185e-02	ci left: 9.003879e-02	ci right 9.817966e-02	k: 1881	n:20000
KS ci ratio: 4.783739e-02	ci left: 2.453000e-01	ci right 2.573724e-01	k: 5026	n:20000
MAS1   20000 perm   4 sec   (5707 perm/sec)   p_kst 2.513000e-01   p_cons 9.405000e-02   p_joint 1.348000e-01

Outputting figure to mutsig2_images.part000000000102/MAS1.2_982_20000_0.2513_0.09405_0.1348.png
                gene_name: MAS1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000102
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 102 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1723>
Subject: Job 9894011: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1723>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000103> was used as the working directory.
Started at Sat Oct  6 00:17:49 2012
Results reported at Sat Oct  6 00:27:01 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000103.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000103.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 103  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000103.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    555.25 sec.
    Max Memory :      3646 MB
    Max Swap   :      6023 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
103
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 103
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 103: processing genes 9196 - 9285
Calculating significance of each gene.
Using projection method.
9196	MAT2B	1.469412e-01
9197	MATK	9.094832e-01
9198	MATN1	8.129676e-01
9199	MATN2	5.657657e-01
9200	MATN3	3.787826e-01
9201	MATN4	3.369461e-01
9202	MATR3	7.064005e-01
9203	MAVS	5.199506e-01
9204	MAX	7.062422e-01
9205	MAZ	1
9206	MB	1
9207	MBD1	6.931805e-01
9208	MBD2	1.965006e-01
9209	MBD3	7.440234e-01
9210	MBD3L1	1.327846e-02
9211	MBD4	4.147697e-01
9212	MBD5	2.457813e-01
In gene MBD6 the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 3056    n = 1	mu =   2.96e-07
9213	MBD6	1.836655e-01
9214	MBIP	6.949885e-01
9215	MBL2	1
9216	MBLAC1	3.333325e-01
9217	MBLAC2	1
9218	MBNL1	1.121693e-01
9219	MBNL2	5.592651e-01
9220	MBNL3	3.541176e-01
9221	MBOAT1	2.395155e-02
9222	MBOAT2	2.510067e-02
9223	MBOAT7	8.506294e-01
9224	MBP	3.335711e-01
9225	MBTD1	1
In gene MBTPS1 the following bins exceed PROBCAP:
    COAD-AA-A00W	categ 6	N = 3247    n = 1	mu =   1.38e-07
9226	MBTPS1	3.418219e-01
9227	MBTPS2	1
9228	MC1R	1
9229	MC2R	6.654382e-02
9230	MC3R	8.710787e-01
9231	MC4R	2.200220e-01
9232	MC5R	3.553169e-02
9233	MCAM	4.835709e-01
9234	MCART1	3.228394e-01
9235	MCART2	1
9236	MCART6	3.505626e-01
9237	MCAT	7.761517e-01
9238	MCC	3.158208e-02
9239	MCCC1	2.852006e-02
9240	MCCC2	5.663278e-01
9241	MCCD1	1
9242	MCEE	1.608967e-01
9243	MCF2	4.464882e-04
9244	MCF2L	9.352647e-01
9245	MCF2L2	9.435921e-03
9246	MCFD2	4.036280e-01
9247	MCHR1	1.225557e-01
9248	MCHR2	2.797937e-01
9249	MCL1	1
9250	MCM10	3.781725e-02
9251	MCM2	1
9252	MCM3	9.383290e-01
9253	MCM3AP	5.925682e-01
9254	MCM4	6.163812e-01
9255	MCM5	4.842136e-01
9256	MCM6	6.130902e-01
9257	MCM7	7.568979e-01
9258	MCM8	8.850850e-01
9259	MCM9	2.799964e-01
9260	MCOLN1	7.609599e-01
9261	MCOLN2	7.044976e-01
9262	MCOLN3	1.763137e-02
9263	MCPH1	3.150650e-01
9264	MCRS1	2.820701e-01
9265	MCTP1	3.823193e-01
9266	MCTP2	4.570337e-01
9267	MCTS1	3.643367e-01
9268	MDC1	9.712616e-01
9269	MDFI	1
9270	MDFIC	6.423118e-01
9271	MDGA1	8.647722e-01
9272	MDGA2	2.128104e-03
9273	MDH1	5.698214e-01
9274	MDH1B	2.269527e-01
9275	MDH2	8.397977e-01
9276	MDK	1
9277	MDM1	8.653079e-01
9278	MDM2	7.003023e-01
9279	MDM4	3.639345e-01
9280	MDN1	2.007415e-01
9281	MDP1	5.955822e-01
9282	ME1	2.536010e-04
9283	ME2	4.969750e-01
9284	ME3	1.104815e-01
9285	MEA1	6.087395e-01
Done

Running MutSig 2:
Scatter job 103: processing genes 9196 - 9285
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MDN1
Processing conservation and coverage...
58% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.983895e-02	ci left: 6.235661e-01	ci right 6.425563e-01	k: 6331	n:10000
Cons ci ratio: 3.637945e-02	ci left: 5.273677e-01	ci right 5.470106e-01	k: 5372	n:10000
KS ci ratio: 4.034749e-02	ci left: 4.756597e-01	ci right 4.953487e-01	k: 4855	n:10000
MDN1   10000 perm   4 sec   (2578 perm/sec)   p_kst 4.855000e-01   p_cons 5.372000e-01   p_joint 6.331000e-01

Outputting figure to mutsig2_images.part000000000103/MDN1.42_17199_10000_0.4855_0.5372_0.6331.png
                gene_name: MDN1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 2 percent done.
MCF2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.429301e-02	ci left: 8.762316e-01	ci right 8.889446e-01	k: 8827	n:10000
KS ci ratio: 2.383317e-02	ci left: 7.212834e-01	ci right 7.387824e-01	k: 7301	n:10000
MCF2L2   10000 perm   2 sec   (5077 perm/sec)   p_kst 7.301000e-01   p_cons 8.827000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MCF2L2.16_3465_10000_0.7301_0.8827_1.png
                gene_name: MCF2L2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
MCF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.262686e-01	ci left: 8.232386e-02	ci right 9.351756e-02	k: 878	n:10000
Cons ci ratio: 5.388181e-02	ci left: 3.366725e-01	ci right 3.554172e-01	k: 3460	n:10000
KS ci ratio: 1.715849e-01	ci left: 4.533038e-02	ci right 5.393440e-02	k: 495	n:10000
MCF2   10000 perm   2 sec   (5673 perm/sec)   p_kst 4.950000e-02   p_cons 3.460000e-01   p_joint 8.780000e-02

Joint ci ratio: 8.906518e-02	ci left: 8.435383e-02	ci right 9.226634e-02	k: 1765	n:20000
Cons ci ratio: 3.793658e-02	ci left: 3.413959e-01	ci right 3.546483e-01	k: 6960	n:20000
KS ci ratio: 1.231045e-01	ci left: 4.527241e-02	ci right 5.125980e-02	k: 964	n:20000
MCF2   20000 perm   4 sec   (5107 perm/sec)   p_kst 4.820000e-02   p_cons 3.480000e-01   p_joint 8.825000e-02

Joint ci ratio: 7.275203e-02	ci left: 8.501430e-02	ci right 9.146570e-02	k: 2646	n:30000
Cons ci ratio: 3.115908e-02	ci left: 3.399514e-01	ci right 3.507452e-01	k: 10360	n:30000
KS ci ratio: 9.854601e-02	ci left: 4.762588e-02	ci right 5.259504e-02	k: 1502	n:30000
MCF2   30000 perm   6 sec   (4920 perm/sec)   p_kst 5.006667e-02   p_cons 3.453333e-01   p_joint 8.820000e-02

Outputting figure to mutsig2_images.part000000000103/MCF2.14_3201_30000_0.050067_0.34533_0.0882.png
                gene_name: MCF2
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.085 
    ci_joint_bounds_right: 0.091 

Current progress: 5 percent done.
MCC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.675168e-02	ci left: 1.341362e-01	ci right 1.478736e-01	k: 1409	n:10000
Cons ci ratio: 1.010478e-01	ci left: 1.241518e-01	ci right 1.374641e-01	k: 1307	n:10000
KS ci ratio: 1.073740e-01	ci left: 1.112507e-01	ci right 1.239730e-01	k: 1175	n:10000
MCC   10000 perm   2 sec   (5729 perm/sec)   p_kst 1.175000e-01   p_cons 1.307000e-01   p_joint 1.409000e-01

Joint ci ratio: 8.317725e-02	ci left: 9.577751e-02	ci right 1.041392e-01	k: 1998	n:20000
Cons ci ratio: 7.377426e-02	ci left: 1.191178e-01	ci right 1.282919e-01	k: 2473	n:20000
KS ci ratio: 7.685506e-02	ci left: 1.106590e-01	ci right 1.195532e-01	k: 2301	n:20000
MCC   20000 perm   4 sec   (5040 perm/sec)   p_kst 1.150500e-01   p_cons 1.236500e-01   p_joint 9.990000e-02

Outputting figure to mutsig2_images.part000000000103/MCC.13_3197_20000_0.11505_0.12365_0.0999.png
                gene_name: MCC
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.100 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 6 percent done.
MCM3AP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.378481e-02	ci left: 7.220913e-01	ci right 7.395740e-01	k: 7309	n:10000
KS ci ratio: 1.663040e-02	ci left: 8.403028e-01	ci right 8.544942e-01	k: 8475	n:10000
MCM3AP   10000 perm   2 sec   (4635 perm/sec)   p_kst 8.475000e-01   p_cons 7.309000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MCM3AP.13_6055_10000_0.8475_0.7309_1.png
                gene_name: MCM3AP
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
MDGA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.371664e-01	ci left: 7.029921e-02	ci right 8.074967e-02	k: 754	n:10000
Cons ci ratio: 2.727293e-02	ci left: 6.645117e-01	ci right 6.829870e-01	k: 6738	n:10000
KS ci ratio: 2.945635e-01	ci left: 1.483579e-02	ci right 2.005075e-02	k: 173	n:10000
MDGA2   10000 perm   2 sec   (5539 perm/sec)   p_kst 1.730000e-02   p_cons 6.738000e-01   p_joint 7.540000e-02

Joint ci ratio: 1.379597e-01	ci left: 3.611746e-02	ci right 4.151767e-02	k: 775	n:20000
Cons ci ratio: 1.885271e-02	ci left: 6.772038e-01	ci right 6.901428e-01	k: 13674	n:20000
KS ci ratio: 2.191154e-01	ci left: 1.402283e-02	ci right 1.752001e-02	k: 314	n:20000
MDGA2   20000 perm   4 sec   (5036 perm/sec)   p_kst 1.570000e-02   p_cons 6.837000e-01   p_joint 3.875000e-02

Joint ci ratio: 1.137159e-01	ci left: 3.592946e-02	ci right 4.029391e-02	k: 1142	n:30000
Cons ci ratio: 1.586033e-02	ci left: 6.652821e-01	ci right 6.759515e-01	k: 20119	n:30000
KS ci ratio: 1.747285e-01	ci left: 1.505690e-02	ci right 1.797116e-02	k: 494	n:30000
MDGA2   30000 perm   6 sec   (4732 perm/sec)   p_kst 1.646667e-02   p_cons 6.706333e-01   p_joint 3.806667e-02

Joint ci ratio: 9.895473e-02	ci left: 3.587896e-02	ci right 3.963853e-02	k: 1509	n:40000
Cons ci ratio: 1.301613e-02	ci left: 6.894073e-01	ci right 6.984645e-01	k: 27758	n:40000
KS ci ratio: 1.529780e-01	ci left: 1.491337e-02	ci right 1.740758e-02	k: 645	n:40000
MDGA2   40000 perm   9 sec   (4602 perm/sec)   p_kst 1.612500e-02   p_cons 6.939500e-01   p_joint 3.772500e-02

Joint ci ratio: 1.005855e-01	ci left: 2.799524e-02	ci right 3.097972e-02	k: 1473	n:50000
Cons ci ratio: 1.167025e-02	ci left: 6.888556e-01	ci right 6.969620e-01	k: 34646	n:50000
KS ci ratio: 1.358481e-01	ci left: 1.526623e-02	ci right 1.751043e-02	k: 818	n:50000
MDGA2   50000 perm   11 sec   (4521 perm/sec)   p_kst 1.636000e-02   p_cons 6.929200e-01   p_joint 2.946000e-02

Joint ci ratio: 9.136504e-02	ci left: 2.840502e-02	ci right 3.114072e-02	k: 1785	n:60000
Cons ci ratio: 1.066605e-02	ci left: 6.887064e-01	ci right 6.961083e-01	k: 41545	n:60000
KS ci ratio: 1.216912e-01	ci left: 1.596455e-02	ci right 1.804922e-02	k: 1019	n:60000
MDGA2   60000 perm   13 sec   (4449 perm/sec)   p_kst 1.698333e-02   p_cons 6.924167e-01   p_joint 2.975000e-02

Joint ci ratio: 8.285495e-02	ci left: 2.970040e-02	ci right 3.228153e-02	k: 2168	n:70000
Cons ci ratio: 9.882534e-03	ci left: 6.886509e-01	ci right 6.955046e-01	k: 48446	n:70000
KS ci ratio: 1.128090e-01	ci left: 1.599972e-02	ci right 1.792633e-02	k: 1186	n:70000
MDGA2   70000 perm   16 sec   (4377 perm/sec)   p_kst 1.694286e-02   p_cons 6.920857e-01   p_joint 3.097143e-02

Joint ci ratio: 7.911319e-02	ci left: 2.859578e-02	ci right 3.096348e-02	k: 2381	n:80000
Cons ci ratio: 9.260776e-03	ci left: 6.881108e-01	ci right 6.945253e-01	k: 55306	n:80000
KS ci ratio: 1.052306e-01	ci left: 1.615204e-02	ci right 1.795823e-02	k: 1363	n:80000
MDGA2   80000 perm   19 sec   (4308 perm/sec)   p_kst 1.703750e-02   p_cons 6.913250e-01   p_joint 2.976250e-02

Joint ci ratio: 7.353126e-02	ci left: 2.948437e-02	ci right 3.174602e-02	k: 2754	n:90000
Cons ci ratio: 8.723480e-03	ci left: 6.886713e-01	ci right 6.947163e-01	k: 62253	n:90000
KS ci ratio: 9.929473e-02	ci left: 1.617632e-02	ci right 1.787723e-02	k: 1531	n:90000
MDGA2   90000 perm   21 sec   (4241 perm/sec)   p_kst 1.701111e-02   p_cons 6.917000e-01   p_joint 3.060000e-02

Outputting figure to mutsig2_images.part000000000103/MDGA2.12_2939_90000_0.017011_0.6917_0.0306.png
                gene_name: MDGA2
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 9 percent done.
MBD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.070122e-02	ci left: 2.852798e-01	ci right 3.032402e-01	k: 2942	n:10000
Cons ci ratio: 6.789526e-02	ci left: 2.414380e-01	ci right 2.585078e-01	k: 2499	n:10000
KS ci ratio: 6.347270e-02	ci left: 2.672549e-01	ci right 2.848757e-01	k: 2760	n:10000
MBD5   10000 perm   2 sec   (4936 perm/sec)   p_kst 2.760000e-01   p_cons 2.499000e-01   p_joint 2.942000e-01

Outputting figure to mutsig2_images.part000000000103/MBD5.11_4525_10000_0.276_0.2499_0.2942.png
                gene_name: MBD5
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 11 percent done.
MCTP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.863152e-02	ci left: 1.563004e-01	ci right 1.708961e-01	k: 1635	n:10000
Cons ci ratio: 1.712220e-01	ci left: 4.552219e-02	ci right 5.414247e-02	k: 497	n:10000
KS ci ratio: 1.578567e-02	ci left: 8.535544e-01	ci right 8.672349e-01	k: 8605	n:10000
MCTP2   10000 perm   2 sec   (5949 perm/sec)   p_kst 8.605000e-01   p_cons 4.970000e-02   p_joint 1.635000e-01

Joint ci ratio: 5.524664e-02	ci left: 1.955143e-01	ci right 2.066728e-01	k: 4021	n:20000
Cons ci ratio: 1.222419e-01	ci left: 4.590339e-02	ci right 5.192862e-02	k: 977	n:20000
KS ci ratio: 1.140877e-02	ci left: 8.501957e-01	ci right 8.600008e-01	k: 17103	n:20000
MCTP2   20000 perm   4 sec   (5346 perm/sec)   p_kst 8.551500e-01   p_cons 4.885000e-02   p_joint 2.010500e-01

Joint ci ratio: 4.949972e-02	ci left: 1.686029e-01	ci right 1.771938e-01	k: 5186	n:30000
Cons ci ratio: 9.977507e-02	ci left: 4.648675e-02	ci right 5.140108e-02	k: 1467	n:30000
KS ci ratio: 9.308117e-03	ci left: 8.513018e-01	ci right 8.592960e-01	k: 25660	n:30000
MCTP2   30000 perm   6 sec   (5020 perm/sec)   p_kst 8.553333e-01   p_cons 4.890000e-02   p_joint 1.728667e-01

Outputting figure to mutsig2_images.part000000000103/MCTP2.10_2801_30000_0.85533_0.0489_0.17287.png
                gene_name: MCTP2
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 12 percent done.
MCOLN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.263127e-02	ci left: 1.760548e-01	ci right 1.913299e-01	k: 1836	n:10000
Cons ci ratio: 1.305483e-01	ci left: 7.727681e-02	ci right 8.816773e-02	k: 826	n:10000
KS ci ratio: 5.397717e-02	ci left: 3.358779e-01	ci right 3.546124e-01	k: 3452	n:10000
MCOLN3   10000 perm   2 sec   (6435 perm/sec)   p_kst 3.452000e-01   p_cons 8.260000e-02   p_joint 1.836000e-01

Joint ci ratio: 5.835213e-02	ci left: 1.787005e-01	ci right 1.894915e-01	k: 3681	n:20000
Cons ci ratio: 9.243538e-02	ci left: 7.867398e-02	ci right 8.634791e-02	k: 1649	n:20000
KS ci ratio: 3.807070e-02	ci left: 3.398033e-01	ci right 3.530414e-01	k: 6928	n:20000
MCOLN3   20000 perm   3 sec   (5775 perm/sec)   p_kst 3.464000e-01   p_cons 8.245000e-02   p_joint 1.840500e-01

Outputting figure to mutsig2_images.part000000000103/MCOLN3.9_1710_20000_0.3464_0.08245_0.18405.png
                gene_name: MCOLN3
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 14 percent done.
ME1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.391793e-02	ci left: 8.817580e-01	ci right 8.942150e-01	k: 8881	n:10000
Cons ci ratio: 1.961298e-02	ci left: 7.918204e-01	ci right 8.076046e-01	k: 7998	n:10000
KS ci ratio: 3.665096e-02	ci left: 5.236636e-01	ci right 5.433168e-01	k: 5335	n:10000
ME1   10000 perm   2 sec   (5488 perm/sec)   p_kst 5.335000e-01   p_cons 7.998000e-01   p_joint 8.881000e-01

Outputting figure to mutsig2_images.part000000000103/ME1.9_1775_10000_0.5335_0.7998_0.8881.png
                gene_name: ME1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 16 percent done.
MBOAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.030047e-01	ci left: 1.199465e-01	ci right 1.330719e-01	k: 1264	n:10000
Cons ci ratio: 8.713937e-02	ci left: 1.609163e-01	ci right 1.756775e-01	k: 1682	n:10000
KS ci ratio: 8.531708e-02	ci left: 1.668119e-01	ci right 1.817783e-01	k: 1742	n:10000
MBOAT1   10000 perm   2 sec   (6208 perm/sec)   p_kst 1.742000e-01   p_cons 1.682000e-01   p_joint 1.264000e-01

Joint ci ratio: 7.520342e-02	ci left: 1.150842e-01	ci right 1.241267e-01	k: 2391	n:20000
Cons ci ratio: 6.131140e-02	ci left: 1.644717e-01	ci right 1.749246e-01	k: 3393	n:20000
KS ci ratio: 6.057130e-02	ci left: 1.678795e-01	ci right 1.784157e-01	k: 3462	n:20000
MBOAT1   20000 perm   4 sec   (5602 perm/sec)   p_kst 1.731000e-01   p_cons 1.696500e-01   p_joint 1.195500e-01

Outputting figure to mutsig2_images.part000000000103/MBOAT1.8_1540_20000_0.1731_0.16965_0.11955.png
                gene_name: MBOAT1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 17 percent done.
MBOAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.046070e-02	ci left: 4.742610e-01	ci right 4.939483e-01	k: 4841	n:10000
Cons ci ratio: 7.126047e-02	ci left: 2.239532e-01	ci right 2.406030e-01	k: 2322	n:10000
KS ci ratio: 2.862361e-02	ci left: 6.427720e-01	ci right 6.615393e-01	k: 6522	n:10000
MBOAT2   10000 perm   2 sec   (6434 perm/sec)   p_kst 6.522000e-01   p_cons 2.322000e-01   p_joint 4.841000e-01

Outputting figure to mutsig2_images.part000000000103/MBOAT2.8_1615_10000_0.6522_0.2322_0.4841.png
                gene_name: MBOAT2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 19 percent done.
MBTPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.479635e-02	ci left: 7.052335e-01	ci right 7.230416e-01	k: 7142	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
MBTPS1   10000 perm   2 sec   (5870 perm/sec)   p_kst 1   p_cons 7.142000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MBTPS1.8_3247_10000_1_0.7142_1.png
                gene_name: MBTPS1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
MCCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.537790e-02	ci left: 1.375651e-01	ci right 1.514427e-01	k: 1444	n:10000
Cons ci ratio: 5.879861e-02	ci left: 2.985619e-01	ci right 3.167503e-01	k: 3076	n:10000
KS ci ratio: 1.354280e-01	ci left: 7.204238e-02	ci right 8.260541e-02	k: 772	n:10000
MCCC1   10000 perm   1 sec   (6680 perm/sec)   p_kst 7.720000e-02   p_cons 3.076000e-01   p_joint 1.444000e-01

Joint ci ratio: 7.263950e-02	ci left: 1.224640e-01	ci right 1.317447e-01	k: 2541	n:20000
Cons ci ratio: 3.986037e-02	ci left: 3.194048e-01	ci right 3.324458e-01	k: 6518	n:20000
KS ci ratio: 9.519797e-02	ci left: 7.441774e-02	ci right 8.190544e-02	k: 1562	n:20000
MCCC1   20000 perm   3 sec   (5965 perm/sec)   p_kst 7.810000e-02   p_cons 3.259000e-01   p_joint 1.270500e-01

Outputting figure to mutsig2_images.part000000000103/MCCC1.8_2254_20000_0.0781_0.3259_0.12705.png
                gene_name: MCCC1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 22 percent done.
MCM10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.715456e-02	ci left: 8.319533e-01	ci right 8.464485e-01	k: 8393	n:10000
KS ci ratio: 8.847932e-03	ci left: 9.472103e-01	ci right 9.557242e-01	k: 9516	n:10000
MCM10   10000 perm   2 sec   (6438 perm/sec)   p_kst 9.516000e-01   p_cons 8.393000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MCM10.8_2704_10000_0.9516_0.8393_1.png
                gene_name: MCM10
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
MATN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.078901e-02	ci left: 2.846853e-01	ci right 3.026351e-01	k: 2936	n:10000
Cons ci ratio: 7.275060e-02	ci left: 2.167479e-01	ci right 2.332127e-01	k: 2249	n:10000
KS ci ratio: 7.881696e-02	ci left: 1.904255e-01	ci right 2.061507e-01	k: 1982	n:10000
MATN2   10000 perm   2 sec   (5995 perm/sec)   p_kst 1.982000e-01   p_cons 2.249000e-01   p_joint 2.936000e-01

Outputting figure to mutsig2_images.part000000000103/MATN2.7_2943_10000_0.1982_0.2249_0.2936.png
                gene_name: MATN2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 25 percent done.
MBD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.435388e-01	ci left: 6.439839e-02	ci right 7.445420e-02	k: 693	n:10000
Cons ci ratio: 5.584290e-03	ci left: 9.772755e-01	ci right 9.828399e-01	k: 9802	n:10000
KS ci ratio: 2.589536e-01	ci left: 1.949575e-02	ci right 2.538701e-02	k: 223	n:10000
MBD6   10000 perm   2 sec   (4955 perm/sec)   p_kst 2.230000e-02   p_cons 9.802000e-01   p_joint 6.930000e-02

Joint ci ratio: 1.237799e-01	ci left: 4.478715e-02	ci right 5.074522e-02	k: 954	n:20000
Cons ci ratio: 3.757598e-03	ci left: 9.800608e-01	ci right 9.837973e-01	k: 19640	n:20000
KS ci ratio: 1.806525e-01	ci left: 2.091926e-02	ci right 2.512099e-02	k: 459	n:20000
MBD6   20000 perm   4 sec   (4775 perm/sec)   p_kst 2.295000e-02   p_cons 9.820000e-01   p_joint 4.770000e-02

Joint ci ratio: 1.078647e-01	ci left: 3.988782e-02	ci right 4.446804e-02	k: 1264	n:30000
Cons ci ratio: 3.046485e-03	ci left: 9.806742e-01	ci right 9.836980e-01	k: 29467	n:30000
KS ci ratio: 1.472850e-01	ci left: 2.136549e-02	ci right 2.479440e-02	k: 691	n:30000
MBD6   30000 perm   6 sec   (4745 perm/sec)   p_kst 2.303333e-02   p_cons 9.822333e-01   p_joint 4.213333e-02

Joint ci ratio: 1.006287e-01	ci left: 3.470784e-02	ci right 3.840983e-02	k: 1461	n:40000
Cons ci ratio: 2.644042e-03	ci left: 9.808044e-01	ci right 9.834250e-01	k: 39286	n:40000
KS ci ratio: 1.260691e-01	ci left: 2.211033e-02	ci right 2.510938e-02	k: 943	n:40000
MBD6   40000 perm   9 sec   (4689 perm/sec)   p_kst 2.357500e-02   p_cons 9.821500e-01   p_joint 3.652500e-02

Joint ci ratio: 8.896206e-02	ci left: 3.571465e-02	ci right 3.905934e-02	k: 1868	n:50000
Cons ci ratio: 2.397394e-03	ci left: 9.804455e-01	ci right 9.828181e-01	k: 49083	n:50000
KS ci ratio: 1.127599e-01	ci left: 2.226771e-02	ci right 2.494799e-02	k: 1179	n:50000
MBD6   50000 perm   11 sec   (4618 perm/sec)   p_kst 2.358000e-02   p_cons 9.816600e-01   p_joint 3.736000e-02

Joint ci ratio: 7.265852e-02	ci left: 4.458312e-02	ci right 4.796094e-02	k: 2775	n:60000
Cons ci ratio: 2.178795e-03	ci left: 9.807156e-01	ci right 9.828708e-01	k: 58909	n:60000
KS ci ratio: 1.030100e-01	ci left: 2.235138e-02	ci right 2.479500e-02	k: 1413	n:60000
MBD6   60000 perm   13 sec   (4547 perm/sec)   p_kst 2.355000e-02   p_cons 9.818167e-01   p_joint 4.625000e-02

Joint ci ratio: 6.749490e-02	ci left: 4.441768e-02	ci right 4.753438e-02	k: 3217	n:70000
Cons ci ratio: 1.987142e-03	ci left: 9.813398e-01	ci right 9.833056e-01	k: 68764	n:70000
KS ci ratio: 9.647253e-02	ci left: 2.193008e-02	ci right 2.416684e-02	k: 1612	n:70000
MBD6   70000 perm   16 sec   (4473 perm/sec)   p_kst 2.302857e-02   p_cons 9.823429e-01   p_joint 4.595714e-02

Outputting figure to mutsig2_images.part000000000103/MBD6.7_3056_70000_0.023029_0.98234_0.045957.png
                gene_name: MBD6
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.048 

Current progress: 27 percent done.
MCPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.397593e-02	ci left: 1.411914e-01	ci right 1.552142e-01	k: 1481	n:10000
Cons ci ratio: 2.605868e-02	ci left: 6.843584e-01	ci right 7.025288e-01	k: 6935	n:10000
KS ci ratio: 1.185194e-01	ci left: 9.272705e-02	ci right 1.045080e-01	k: 985	n:10000
MCPH1   10000 perm   2 sec   (5653 perm/sec)   p_kst 9.850000e-02   p_cons 6.935000e-01   p_joint 1.481000e-01

Joint ci ratio: 5.506675e-02	ci left: 1.965533e-01	ci right 2.077334e-01	k: 4042	n:20000
Cons ci ratio: 1.830772e-02	ci left: 6.898234e-01	ci right 7.026195e-01	k: 13925	n:20000
KS ci ratio: 8.231076e-02	ci left: 9.764233e-02	ci right 1.060738e-01	k: 2036	n:20000
MCPH1   20000 perm   4 sec   (5088 perm/sec)   p_kst 1.018000e-01   p_cons 6.962500e-01   p_joint 2.021000e-01

Outputting figure to mutsig2_images.part000000000103/MCPH1.7_2572_20000_0.1018_0.69625_0.2021.png
                gene_name: MCPH1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 28 percent done.
MCTP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.033296e-02	ci left: 7.798558e-01	ci right 7.959761e-01	k: 7880	n:10000
Cons ci ratio: 3.254592e-02	ci left: 5.821915e-01	ci right 6.015549e-01	k: 5919	n:10000
KS ci ratio: 2.863623e-02	ci left: 6.425708e-01	ci right 6.613406e-01	k: 6520	n:10000
MCTP1   10000 perm   2 sec   (6009 perm/sec)   p_kst 6.520000e-01   p_cons 5.919000e-01   p_joint 7.880000e-01

Outputting figure to mutsig2_images.part000000000103/MCTP1.7_3153_10000_0.652_0.5919_0.788.png
                gene_name: MCTP1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 30 percent done.
MC5R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.111871e-02	ci left: 3.607251e-01	ci right 3.797506e-01	k: 3702	n:10000
Cons ci ratio: 9.145415e-02	ci left: 1.480561e-01	ci right 1.623454e-01	k: 1551	n:10000
KS ci ratio: 2.668554e-02	ci left: 6.740801e-01	ci right 6.924131e-01	k: 6833	n:10000
MC5R   10000 perm   2 sec   (5978 perm/sec)   p_kst 6.833000e-01   p_cons 1.551000e-01   p_joint 3.702000e-01

Outputting figure to mutsig2_images.part000000000103/MC5R.6_982_10000_0.6833_0.1551_0.3702.png
                gene_name: MC5R
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 31 percent done.
MCHR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.271914e-02	ci left: 2.720070e-01	ci right 2.897208e-01	k: 2808	n:10000
Cons ci ratio: 1.340238e-01	ci left: 7.349567e-02	ci right 8.415122e-02	k: 787	n:10000
KS ci ratio: 5.392946e-02	ci left: 3.362752e-01	ci right 3.550148e-01	k: 3456	n:10000
MCHR1   10000 perm   1 sec   (7063 perm/sec)   p_kst 3.456000e-01   p_cons 7.870000e-02   p_joint 2.808000e-01

Joint ci ratio: 4.882335e-02	ci left: 2.377627e-01	ci right 2.497119e-01	k: 4874	n:20000
Cons ci ratio: 9.603360e-02	ci left: 7.319530e-02	ci right 8.062826e-02	k: 1537	n:20000
KS ci ratio: 3.807070e-02	ci left: 3.398033e-01	ci right 3.530414e-01	k: 6928	n:20000
MCHR1   20000 perm   3 sec   (5936 perm/sec)   p_kst 3.464000e-01   p_cons 7.685000e-02   p_joint 2.437000e-01

Outputting figure to mutsig2_images.part000000000103/MCHR1.6_1277_20000_0.3464_0.07685_0.2437.png
                gene_name: MCHR1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 33 percent done.
MCM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.334015e-02	ci left: 5.704549e-01	ci right 5.898984e-01	k: 5802	n:10000
Cons ci ratio: 1.731320e-02	ci left: 8.294091e-01	ci right 8.439942e-01	k: 8368	n:10000
KS ci ratio: 4.858565e-02	ci left: 3.846041e-01	ci right 4.038576e-01	k: 3942	n:10000
MCM5   10000 perm   2 sec   (6538 perm/sec)   p_kst 3.942000e-01   p_cons 8.368000e-01   p_joint 5.802000e-01

Outputting figure to mutsig2_images.part000000000103/MCM5.6_2269_10000_0.3942_0.8368_0.5802.png
                gene_name: MCM5
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 34 percent done.
MDGA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
Cons ci ratio: 6.279685e-02	ci left: 2.715119e-01	ci right 2.892162e-01	k: 2803	n:10000
KS ci ratio: 2.863014e-01	ci left: 1.576399e-02	ci right 2.112177e-02	k: 183	n:10000
MDGA1   10000 perm   2 sec   (5722 perm/sec)   p_kst 1.830000e-02   p_cons 2.803000e-01   p_joint 1.450000e-02

Joint ci ratio: 1.887942e-01	ci left: 1.910538e-02	ci right 2.313553e-02	k: 421	n:20000
Cons ci ratio: 4.431646e-02	ci left: 2.749267e-01	ci right 2.874370e-01	k: 5623	n:20000
KS ci ratio: 1.973228e-01	ci left: 1.743844e-02	ci right 2.130309e-02	k: 386	n:20000
MDGA1   20000 perm   4 sec   (5163 perm/sec)   p_kst 1.930000e-02   p_cons 2.811500e-01   p_joint 2.105000e-02

Joint ci ratio: 1.317389e-01	ci left: 2.677524e-02	ci right 3.058344e-02	k: 859	n:30000
Cons ci ratio: 3.638525e-02	ci left: 2.738634e-01	ci right 2.840461e-01	k: 8368	n:30000
KS ci ratio: 1.580197e-01	ci left: 1.850980e-02	ci right 2.171742e-02	k: 602	n:30000
MDGA1   30000 perm   6 sec   (4948 perm/sec)   p_kst 2.006667e-02   p_cons 2.789333e-01   p_joint 2.863333e-02

Joint ci ratio: 1.100389e-01	ci left: 2.905546e-02	ci right 3.246311e-02	k: 1229	n:40000
Cons ci ratio: 3.144153e-02	ci left: 2.754293e-01	ci right 2.842526e-01	k: 11193	n:40000
KS ci ratio: 1.372859e-01	ci left: 1.860214e-02	ci right 2.136817e-02	k: 798	n:40000
MDGA1   40000 perm   8 sec   (4808 perm/sec)   p_kst 1.995000e-02   p_cons 2.798250e-01   p_joint 3.072500e-02

Joint ci ratio: 1.151303e-01	ci left: 2.135392e-02	ci right 2.398191e-02	k: 1132	n:50000
Cons ci ratio: 2.813963e-02	ci left: 2.756491e-01	ci right 2.835365e-01	k: 13979	n:50000
KS ci ratio: 1.243743e-01	ci left: 1.826717e-02	ci right 2.070906e-02	k: 973	n:50000
MDGA1   50000 perm   11 sec   (4689 perm/sec)   p_kst 1.946000e-02   p_cons 2.795800e-01   p_joint 2.264000e-02

Joint ci ratio: 8.927426e-02	ci left: 2.974172e-02	ci right 3.253721e-02	k: 1867	n:60000
Cons ci ratio: 2.563271e-02	ci left: 2.768579e-01	ci right 2.840633e-01	k: 16827	n:60000
KS ci ratio: 1.144804e-01	ci left: 1.806835e-02	ci right 2.027851e-02	k: 1149	n:60000
MDGA1   60000 perm   13 sec   (4593 perm/sec)   p_kst 1.915000e-02   p_cons 2.804500e-01   p_joint 3.111667e-02

Joint ci ratio: 9.114703e-02	ci left: 2.456826e-02	ci right 2.692842e-02	k: 1801	n:70000
Cons ci ratio: 2.377475e-02	ci left: 2.763912e-01	ci right 2.830556e-01	k: 19580	n:70000
KS ci ratio: 1.049824e-01	ci left: 1.850240e-02	ci right 2.056627e-02	k: 1366	n:70000
MDGA1   70000 perm   16 sec   (4505 perm/sec)   p_kst 1.951429e-02   p_cons 2.797143e-01   p_joint 2.572857e-02

Joint ci ratio: 9.213794e-02	ci left: 2.110463e-02	ci right 2.315523e-02	k: 1769	n:80000
Cons ci ratio: 2.228645e-02	ci left: 2.757568e-01	ci right 2.819842e-01	k: 22309	n:80000
KS ci ratio: 9.853342e-02	ci left: 1.844325e-02	ci right 2.036683e-02	k: 1551	n:80000
MDGA1   80000 perm   18 sec   (4423 perm/sec)   p_kst 1.938750e-02   p_cons 2.788625e-01   p_joint 2.211250e-02

Outputting figure to mutsig2_images.part000000000103/MDGA1.6_2936_80000_0.019387_0.27886_0.022113.png
                gene_name: MDGA1
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 36 percent done.
MDH1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.693242e-02	ci left: 6.700507e-01	ci right 6.884448e-01	k: 6793	n:10000
KS ci ratio: 2.800172e-02	ci left: 6.527333e-01	ci right 6.713722e-01	k: 6621	n:10000
MDH1B   10000 perm   2 sec   (6425 perm/sec)   p_kst 6.621000e-01   p_cons 6.793000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MDH1B.6_1605_10000_0.6621_0.6793_1.png
                gene_name: MDH1B
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
MATR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.651176e-02	ci left: 2.491493e-01	ci right 2.663920e-01	k: 2577	n:10000
Cons ci ratio: 1.008704e-01	ci left: 1.245431e-01	ci right 1.378726e-01	k: 1311	n:10000
KS ci ratio: 3.932758e-02	ci left: 4.884519e-01	ci right 5.081491e-01	k: 4983	n:10000
MATR3   10000 perm   2 sec   (6409 perm/sec)   p_kst 4.983000e-01   p_cons 1.311000e-01   p_joint 2.577000e-01

Joint ci ratio: 4.216493e-02	ci left: 2.953430e-01	ci right 3.081147e-01	k: 6034	n:20000
Cons ci ratio: 7.204010e-02	ci left: 1.242852e-01	ci right 1.336230e-01	k: 2578	n:20000
KS ci ratio: 2.848656e-02	ci left: 4.793505e-01	ci right 4.932535e-01	k: 9726	n:20000
MATR3   20000 perm   4 sec   (5665 perm/sec)   p_kst 4.863000e-01   p_cons 1.289000e-01   p_joint 3.017000e-01

Outputting figure to mutsig2_images.part000000000103/MATR3.5_2600_20000_0.4863_0.1289_0.3017.png
                gene_name: MATR3
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 39 percent done.
MBD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.574205e-02	ci left: 3.215787e-01	ci right 3.401199e-01	k: 3308	n:10000
Cons ci ratio: 1.117840e-01	ci left: 1.033465e-01	ci right 1.156820e-01	k: 1094	n:10000
KS ci ratio: 4.959722e-02	ci left: 3.748505e-01	ci right 3.940169e-01	k: 3844	n:10000
MBD1   10000 perm   2 sec   (6357 perm/sec)   p_kst 3.844000e-01   p_cons 1.094000e-01   p_joint 3.308000e-01

Joint ci ratio: 3.956740e-02	ci left: 3.226378e-01	ci right 3.357119e-01	k: 6583	n:20000
Cons ci ratio: 7.808702e-02	ci left: 1.075135e-01	ci right 1.162997e-01	k: 2237	n:20000
KS ci ratio: 3.536852e-02	ci left: 3.737143e-01	ci right 3.872205e-01	k: 7609	n:20000
MBD1   20000 perm   4 sec   (5691 perm/sec)   p_kst 3.804500e-01   p_cons 1.118500e-01   p_joint 3.291500e-01

Outputting figure to mutsig2_images.part000000000103/MBD1.5_2072_20000_0.38045_0.11185_0.32915.png
                gene_name: MBD1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 41 percent done.
MBD3L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.365934e-02	ci left: 2.125053e-01	ci right 2.288578e-01	k: 2206	n:10000
Cons ci ratio: 9.572663e-02	ci left: 1.366833e-01	ci right 1.505251e-01	k: 1435	n:10000
KS ci ratio: 6.139518e-02	ci left: 2.806233e-01	ci right 2.984994e-01	k: 2895	n:10000
MBD3L1   10000 perm   1 sec   (7042 perm/sec)   p_kst 2.895000e-01   p_cons 1.435000e-01   p_joint 2.206000e-01

Outputting figure to mutsig2_images.part000000000103/MBD3L1.5_589_10000_0.2895_0.1435_0.2206.png
                gene_name: MBD3L1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 42 percent done.
MBNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.318562e-01	ci left: 7.582209e-02	ci right 8.662335e-02	k: 811	n:10000
Cons ci ratio: 5.704172e-01	ci left: 3.369688e-03	ci right 6.131041e-03	k: 46	n:10000
KS ci ratio: 1.631413e-02	ci left: 8.452954e-01	ci right 8.592987e-01	k: 8524	n:10000
MBNL1   10000 perm   2 sec   (6643 perm/sec)   p_kst 8.524000e-01   p_cons 4.600000e-03   p_joint 8.110000e-02

Joint ci ratio: 1.155622e-01	ci left: 5.124802e-02	ci right 5.758231e-02	k: 1087	n:20000
Cons ci ratio: 4.122633e-01	ci left: 3.575194e-03	ci right 5.473296e-03	k: 89	n:20000
KS ci ratio: 1.022230e-02	ci left: 8.757209e-01	ci right 8.847683e-01	k: 17606	n:20000
MBNL1   20000 perm   3 sec   (5920 perm/sec)   p_kst 8.803000e-01   p_cons 4.450000e-03   p_joint 5.435000e-02

Joint ci ratio: 1.013829e-01	ci left: 4.505525e-02	ci right 4.989954e-02	k: 1423	n:30000
Cons ci ratio: 3.341371e-01	ci left: 3.804809e-03	ci right 5.360201e-03	k: 136	n:30000
KS ci ratio: 8.372553e-03	ci left: 8.758978e-01	ci right 8.832952e-01	k: 26389	n:30000
MBNL1   30000 perm   5 sec   (5461 perm/sec)   p_kst 8.796333e-01   p_cons 4.533333e-03   p_joint 4.743333e-02

Joint ci ratio: 9.573876e-02	ci left: 3.829598e-02	ci right 4.217113e-02	k: 1608	n:40000
Cons ci ratio: 2.829597e-01	ci left: 4.099861e-03	ci right 5.473552e-03	k: 190	n:40000
KS ci ratio: 7.220158e-03	ci left: 8.773063e-01	ci right 8.836883e-01	k: 35221	n:40000
MBNL1   40000 perm   8 sec   (5326 perm/sec)   p_kst 8.805250e-01   p_cons 4.750000e-03   p_joint 4.020000e-02

Joint ci ratio: 8.948562e-02	ci left: 3.530368e-02	ci right 3.863036e-02	k: 1847	n:50000
Cons ci ratio: 2.601620e-01	ci left: 3.932257e-03	ci right 5.126391e-03	k: 225	n:50000
KS ci ratio: 6.477003e-03	ci left: 8.770185e-01	ci right 8.827373e-01	k: 43995	n:50000
MBNL1   50000 perm   10 sec   (5213 perm/sec)   p_kst 8.799000e-01   p_cons 4.500000e-03   p_joint 3.694000e-02

Joint ci ratio: 6.908035e-02	ci left: 4.917113e-02	ci right 5.270580e-02	k: 3055	n:60000
Cons ci ratio: 2.371436e-01	ci left: 3.995881e-03	ci right 5.086230e-03	k: 271	n:60000
KS ci ratio: 5.924741e-03	ci left: 8.768348e-01	ci right 8.820618e-01	k: 52768	n:60000
MBNL1   60000 perm   12 sec   (5110 perm/sec)   p_kst 8.794667e-01   p_cons 4.516667e-03   p_joint 5.091667e-02

Joint ci ratio: 7.247604e-02	ci left: 3.865855e-02	ci right 4.157973e-02	k: 2807	n:70000
Cons ci ratio: 2.179485e-01	ci left: 4.098699e-03	ci right 5.114466e-03	k: 321	n:70000
KS ci ratio: 5.471041e-03	ci left: 8.775842e-01	ci right 8.824128e-01	k: 61601	n:70000
MBNL1   70000 perm   14 sec   (5005 perm/sec)   p_kst 8.800143e-01   p_cons 4.585714e-03   p_joint 4.010000e-02

Joint ci ratio: 7.218694e-02	ci left: 3.426523e-02	ci right 3.684360e-02	k: 2843	n:80000
Cons ci ratio: 2.019517e-01	ci left: 4.214097e-03	ci right 5.172367e-03	k: 374	n:80000
KS ci ratio: 5.130125e-03	ci left: 8.772241e-01	ci right 8.817483e-01	k: 70360	n:80000
MBNL1   80000 perm   16 sec   (4912 perm/sec)   p_kst 8.795000e-01   p_cons 4.675000e-03   p_joint 3.553750e-02

Joint ci ratio: 6.879201e-02	ci left: 3.362302e-02	ci right 3.602930e-02	k: 3133	n:90000
Cons ci ratio: 1.912866e-01	ci left: 4.200132e-03	ci right 5.098921e-03	k: 417	n:90000
KS ci ratio: 4.836715e-03	ci left: 8.773553e-01	ci right 8.816202e-01	k: 79155	n:90000
MBNL1   90000 perm   19 sec   (4827 perm/sec)   p_kst 8.795000e-01   p_cons 4.633333e-03   p_joint 3.481111e-02

Joint ci ratio: 5.683512e-02	ci left: 4.411791e-02	ci right 4.670854e-02	k: 4540	n:100000
Cons ci ratio: 1.825486e-01	ci left: 4.170935e-03	ci right 5.018195e-03	k: 458	n:100000
KS ci ratio: 4.649551e-03	ci left: 8.746161e-01	ci right 8.787020e-01	k: 87667	n:100000
MBNL1   100000 perm   21 sec   (4740 perm/sec)   p_kst 8.766700e-01   p_cons 4.580000e-03   p_joint 4.540000e-02

Joint ci ratio: 5.528971e-02	ci left: 4.249046e-02	ci right 4.491549e-02	k: 4806	n:110000
Cons ci ratio: 1.733477e-01	ci left: 4.226078e-03	ci right 5.036744e-03	k: 508	n:110000
KS ci ratio: 4.441305e-03	ci left: 8.743124e-01	ci right 8.782132e-01	k: 96390	n:110000
MBNL1   110000 perm   24 sec   (4661 perm/sec)   p_kst 8.762727e-01   p_cons 4.618182e-03   p_joint 4.369091e-02

Joint ci ratio: 5.386629e-02	ci left: 4.112699e-02	ci right 4.341186e-02	k: 5071	n:120000
Cons ci ratio: 1.667652e-01	ci left: 4.201028e-03	ci right 4.973214e-03	k: 549	n:120000
KS ci ratio: 4.254625e-03	ci left: 8.742730e-01	ci right 8.780088e-01	k: 105138	n:120000
MBNL1   120000 perm   26 sec   (4585 perm/sec)   p_kst 8.761500e-01   p_cons 4.575000e-03   p_joint 4.225833e-02

Joint ci ratio: 5.747497e-02	ci left: 3.355236e-02	ci right 3.554539e-02	k: 4490	n:130000
Cons ci ratio: 1.597968e-01	ci left: 4.239405e-03	ci right 4.982959e-03	k: 598	n:130000
KS ci ratio: 4.094296e-03	ci left: 8.739949e-01	ci right 8.775883e-01	k: 113854	n:130000
MBNL1   130000 perm   29 sec   (4490 perm/sec)   p_kst 8.758000e-01   p_cons 4.600000e-03   p_joint 3.453846e-02

Joint ci ratio: 5.026802e-02	ci left: 4.058117e-02	ci right 4.268073e-02	k: 5827	n:140000
Cons ci ratio: 1.538735e-01	ci left: 4.259135e-03	ci right 4.975906e-03	k: 645	n:140000
KS ci ratio: 3.939009e-03	ci left: 8.744131e-01	ci right 8.778713e-01	k: 122661	n:140000
MBNL1   140000 perm   32 sec   (4423 perm/sec)   p_kst 8.761500e-01   p_cons 4.607143e-03   p_joint 4.162143e-02

Joint ci ratio: 4.854442e-02	ci left: 4.064778e-02	ci right 4.267665e-02	k: 6248	n:150000
Cons ci ratio: 1.484560e-01	ci left: 4.283094e-03	ci right 4.976268e-03	k: 693	n:150000
KS ci ratio: 3.805732e-03	ci left: 8.744556e-01	ci right 8.777965e-01	k: 131420	n:150000
MBNL1   150000 perm   35 sec   (4331 perm/sec)   p_kst 8.761333e-01   p_cons 4.620000e-03   p_joint 4.165333e-02

Joint ci ratio: 4.694271e-02	ci left: 4.078130e-02	ci right 4.274785e-02	k: 6681	n:160000
Cons ci ratio: 1.446544e-01	ci left: 4.238164e-03	ci right 4.904984e-03	k: 730	n:160000
KS ci ratio: 3.682158e-03	ci left: 8.746705e-01	ci right 8.779033e-01	k: 140207	n:160000
MBNL1   160000 perm   38 sec   (4266 perm/sec)   p_kst 8.762937e-01   p_cons 4.562500e-03   p_joint 4.175625e-02

Joint ci ratio: 4.607061e-02	ci left: 3.990523e-02	ci right 4.179282e-02	k: 6943	n:170000
Cons ci ratio: 1.406713e-01	ci left: 4.227100e-03	ci right 4.872329e-03	k: 772	n:170000
KS ci ratio: 3.577150e-03	ci left: 8.744180e-01	ci right 8.775574e-01	k: 148919	n:170000
MBNL1   170000 perm   41 sec   (4181 perm/sec)   p_kst 8.759941e-01   p_cons 4.541176e-03   p_joint 4.084118e-02

Joint ci ratio: 4.557160e-02	ci left: 3.858284e-02	ci right 4.038759e-02	k: 7106	n:180000
Cons ci ratio: 1.365798e-01	ci left: 4.244319e-03	ci right 4.871802e-03	k: 819	n:180000
KS ci ratio: 3.473335e-03	ci left: 8.746529e-01	ci right 8.777016e-01	k: 157713	n:180000
MBNL1   180000 perm   44 sec   (4123 perm/sec)   p_kst 8.761833e-01   p_cons 4.550000e-03   p_joint 3.947778e-02

Joint ci ratio: 4.934048e-02	ci left: 3.135874e-02	ci right 3.295031e-02	k: 6108	n:190000
Cons ci ratio: 1.336803e-01	ci left: 4.203997e-03	ci right 4.811274e-03	k: 855	n:190000
KS ci ratio: 3.383959e-03	ci left: 8.744832e-01	ci right 8.774527e-01	k: 166435	n:190000
MBNL1   190000 perm   47 sec   (4070 perm/sec)   p_kst 8.759737e-01   p_cons 4.500000e-03   p_joint 3.214737e-02

Joint ci ratio: 4.329204e-02	ci left: 3.852683e-02	ci right 4.023656e-02	k: 7875	n:200000
Cons ci ratio: 1.297221e-01	ci left: 4.250073e-03	ci right 4.844428e-03	k: 908	n:200000
KS ci ratio: 3.301061e-03	ci left: 8.743366e-01	ci right 8.772325e-01	k: 175158	n:200000
MBNL1   200000 perm   50 sec   (4018 perm/sec)   p_kst 8.757900e-01   p_cons 4.540000e-03   p_joint 3.937500e-02

Joint ci ratio: 4.336289e-02	ci left: 3.664433e-02	ci right 3.827323e-02	k: 7865	n:210000
Cons ci ratio: 1.264927e-01	ci left: 4.264328e-03	ci right 4.844716e-03	k: 955	n:210000
KS ci ratio: 3.224881e-03	ci left: 8.741426e-01	ci right 8.769708e-01	k: 183868	n:210000
MBNL1   210000 perm   53 sec   (3954 perm/sec)   p_kst 8.755619e-01   p_cons 4.547619e-03   p_joint 3.745238e-02

Joint ci ratio: 4.251506e-02	ci left: 3.641301e-02	ci right 3.799921e-02	k: 8184	n:220000
Cons ci ratio: 1.233079e-01	ci left: 4.290670e-03	ci right 4.858868e-03	k: 1005	n:220000
KS ci ratio: 3.149395e-03	ci left: 8.742685e-01	ci right 8.770307e-01	k: 192644	n:220000
MBNL1   220000 perm   56 sec   (3898 perm/sec)   p_kst 8.756545e-01   p_cons 4.568182e-03   p_joint 3.720000e-02

Joint ci ratio: 4.507597e-02	ci left: 3.111673e-02	ci right 3.255597e-02	k: 7321	n:230000
Cons ci ratio: 1.207549e-01	ci left: 4.285368e-03	ci right 4.840274e-03	k: 1048	n:230000
KS ci ratio: 3.077680e-03	ci left: 8.744758e-01	ci right 8.771756e-01	k: 201441	n:230000
MBNL1   230000 perm   60 sec   (3846 perm/sec)   p_kst 8.758304e-01   p_cons 4.556522e-03   p_joint 3.183043e-02

Joint ci ratio: 4.422068e-02	ci left: 3.100264e-02	ci right 3.240870e-02	k: 7608	n:240000
Cons ci ratio: 1.179749e-01	ci left: 4.308928e-03	ci right 4.853143e-03	k: 1098	n:240000
KS ci ratio: 3.012549e-03	ci left: 8.745283e-01	ci right 8.771709e-01	k: 210205	n:240000
MBNL1   240000 perm   63 sec   (3798 perm/sec)   p_kst 8.758542e-01   p_cons 4.575000e-03   p_joint 3.170000e-02

Joint ci ratio: 4.327664e-02	ci left: 3.108791e-02	ci right 3.246698e-02	k: 7943	n:250000
Cons ci ratio: 1.160912e-01	ci left: 4.276351e-03	ci right 4.807237e-03	k: 1134	n:250000
KS ci ratio: 2.955185e-03	ci left: 8.742959e-01	ci right 8.768874e-01	k: 218899	n:250000
MBNL1   250000 perm   67 sec   (3751 perm/sec)   p_kst 8.755960e-01   p_cons 4.536000e-03   p_joint 3.177200e-02

Joint ci ratio: 4.277364e-02	ci left: 3.062257e-02	ci right 3.196482e-02	k: 8135	n:260000
Cons ci ratio: 1.139532e-01	ci left: 4.272502e-03	ci right 4.792484e-03	k: 1177	n:260000
KS ci ratio: 2.896004e-03	ci left: 8.744566e-01	ci right 8.769965e-01	k: 227690	n:260000
MBNL1   260000 perm   70 sec   (3703 perm/sec)   p_kst 8.757308e-01   p_cons 4.526923e-03   p_joint 3.128846e-02

Joint ci ratio: 4.275319e-02	ci left: 2.955034e-02	ci right 3.084495e-02	k: 8152	n:270000
Cons ci ratio: 1.114715e-01	ci left: 4.305027e-03	ci right 4.816808e-03	k: 1230	n:270000
KS ci ratio: 2.842414e-03	ci left: 8.744385e-01	ci right 8.769312e-01	k: 236436	n:270000
MBNL1   270000 perm   74 sec   (3650 perm/sec)   p_kst 8.756889e-01   p_cons 4.555556e-03   p_joint 3.019259e-02

Joint ci ratio: 4.128793e-02	ci left: 3.054496e-02	ci right 3.183620e-02	k: 8732	n:280000
Cons ci ratio: 1.092735e-01	ci left: 4.324920e-03	ci right 4.828276e-03	k: 1280	n:280000
KS ci ratio: 2.789037e-03	ci left: 8.746301e-01	ci right 8.770764e-01	k: 245240	n:280000
MBNL1   280000 perm   78 sec   (3605 perm/sec)   p_kst 8.758571e-01   p_cons 4.571429e-03   p_joint 3.118571e-02

Joint ci ratio: 4.123301e-02	ci left: 2.960059e-02	ci right 3.085020e-02	k: 8764	n:290000
Cons ci ratio: 1.074442e-01	ci left: 4.323397e-03	ci right 4.817619e-03	k: 1324	n:290000
KS ci ratio: 2.736988e-03	ci left: 8.749335e-01	ci right 8.773349e-01	k: 254080	n:290000
MBNL1   290000 perm   82 sec   (3556 perm/sec)   p_kst 8.761379e-01   p_cons 4.565517e-03   p_joint 3.022069e-02

Joint ci ratio: 4.057053e-02	ci left: 2.956738e-02	ci right 3.079506e-02	k: 9053	n:300000
Cons ci ratio: 1.057814e-01	ci left: 4.315550e-03	ci right 4.800764e-03	k: 1366	n:300000
KS ci ratio: 2.687528e-03	ci left: 8.752337e-01	ci right 8.775924e-01	k: 262925	n:300000
MBNL1   300000 perm   85 sec   (3514 perm/sec)   p_kst 8.764167e-01   p_cons 4.553333e-03   p_joint 3.017667e-02

Joint ci ratio: 3.989938e-02	ci left: 2.959396e-02	ci right 3.080195e-02	k: 9360	n:310000
Cons ci ratio: 1.041935e-01	ci left: 4.308264e-03	ci right 4.784942e-03	k: 1408	n:310000
KS ci ratio: 2.646075e-03	ci left: 8.750679e-01	ci right 8.773896e-01	k: 271632	n:310000
MBNL1   310000 perm   89 sec   (3471 perm/sec)   p_kst 8.762323e-01   p_cons 4.541935e-03   p_joint 3.019355e-02

Joint ci ratio: 3.930240e-02	ci left: 2.955713e-02	ci right 3.074515e-02	k: 9647	n:320000
Cons ci ratio: 1.025332e-01	ci left: 4.313665e-03	ci right 4.782877e-03	k: 1454	n:320000
KS ci ratio: 2.603663e-03	ci left: 8.751480e-01	ci right 8.774327e-01	k: 280414	n:320000
MBNL1   320000 perm   93 sec   (3431 perm/sec)   p_kst 8.762937e-01   p_cons 4.543750e-03   p_joint 3.014688e-02

Joint ci ratio: 3.855970e-02	ci left: 2.978082e-02	ci right 3.095472e-02	k: 10020	n:330000
Cons ci ratio: 1.009497e-01	ci left: 4.318795e-03	ci right 4.780881e-03	k: 1500	n:330000
KS ci ratio: 2.565519e-03	ci left: 8.750289e-01	ci right 8.772797e-01	k: 289132	n:330000
MBNL1   330000 perm   97 sec   (3390 perm/sec)   p_kst 8.761576e-01   p_cons 4.545455e-03   p_joint 3.036364e-02

Joint ci ratio: 3.800297e-02	ci left: 2.976716e-02	ci right 3.092321e-02	k: 10316	n:340000
Cons ci ratio: 9.934074e-02	ci left: 4.332281e-03	ci right 4.787991e-03	k: 1549	n:340000
KS ci ratio: 2.527289e-03	ci left: 8.750646e-01	ci right 8.772819e-01	k: 297900	n:340000
MBNL1   340000 perm   101 sec   (3350 perm/sec)   p_kst 8.761765e-01   p_cons 4.555882e-03   p_joint 3.034118e-02

Outputting figure to mutsig2_images.part000000000103/MBNL1.5_1307_340000_0.87618_0.0045559_0.030341.png
                gene_name: MBNL1
               theta_stop: 0.099 
                    nperm: 340000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.0046 
      ci_cons_bounds_left: 0.0043 
     ci_cons_bounds_right: 0.0048 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.031 

Current progress: 44 percent done.
MC2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.097963e-02	ci left: 6.058827e-01	ci right 6.250500e-01	k: 6155	n:10000
KS ci ratio: 1.226434e-02	ci left: 9.051459e-01	ci right 9.164135e-01	k: 9109	n:10000
MC2R   10000 perm   1 sec   (7291 perm/sec)   p_kst 9.109000e-01   p_cons 6.155000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MC2R.5_898_10000_0.9109_0.6155_1.png
                gene_name: MC2R
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
ME3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.036624e-01	ci left: 1.185779e-01	ci right 1.316413e-01	k: 1250	n:10000
Cons ci ratio: 7.844707e-02	ci left: 1.919029e-01	ci right 2.076724e-01	k: 1997	n:10000
KS ci ratio: 9.382733e-02	ci left: 1.415836e-01	ci right 1.556218e-01	k: 1485	n:10000
ME3   10000 perm   1 sec   (6797 perm/sec)   p_kst 1.485000e-01   p_cons 1.997000e-01   p_joint 1.250000e-01

Joint ci ratio: 6.443560e-02	ci left: 1.510951e-01	ci right 1.612051e-01	k: 3122	n:20000
Cons ci ratio: 5.528966e-02	ci left: 1.952669e-01	ci right 2.064202e-01	k: 4016	n:20000
KS ci ratio: 6.530511e-02	ci left: 1.476420e-01	ci right 1.576592e-01	k: 3052	n:20000
ME3   20000 perm   3 sec   (6040 perm/sec)   p_kst 1.526000e-01   p_cons 2.008000e-01   p_joint 1.561000e-01

Outputting figure to mutsig2_images.part000000000103/ME3.5_1871_20000_0.1526_0.2008_0.1561.png
                gene_name: ME3
               theta_stop: 0.065 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 47 percent done.
MATN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.394965e-02	ci left: 1.714324e-01	ci right 1.865551e-01	k: 1789	n:10000
Cons ci ratio: 3.381460e-02	ci left: 5.635359e-01	ci right 5.830214e-01	k: 5733	n:10000
KS ci ratio: 1.165621e-01	ci left: 9.564778e-02	ci right 1.075854e-01	k: 1015	n:10000
MATN4   10000 perm   2 sec   (6598 perm/sec)   p_kst 1.015000e-01   p_cons 5.733000e-01   p_joint 1.789000e-01

Joint ci ratio: 5.536728e-02	ci left: 1.948216e-01	ci right 2.059656e-01	k: 4007	n:20000
Cons ci ratio: 2.371462e-02	ci left: 5.704681e-01	ci right 5.842094e-01	k: 11547	n:20000
KS ci ratio: 8.162098e-02	ci left: 9.916397e-02	ci right 1.076517e-01	k: 2067	n:20000
MATN4   20000 perm   3 sec   (5894 perm/sec)   p_kst 1.033500e-01   p_cons 5.773500e-01   p_joint 2.003500e-01

Outputting figure to mutsig2_images.part000000000103/MATN4.4_1782_20000_0.10335_0.57735_0.20035.png
                gene_name: MATN4
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 48 percent done.
MC4R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.969102e-02	ci left: 4.838540e-01	ci right 5.035497e-01	k: 4937	n:10000
Cons ci ratio: 4.987073e-02	ci left: 3.722635e-01	ci right 3.914054e-01	k: 3818	n:10000
KS ci ratio: 5.273525e-02	ci left: 3.464097e-01	ci right 3.652744e-01	k: 3558	n:10000
MC4R   10000 perm   1 sec   (7110 perm/sec)   p_kst 3.558000e-01   p_cons 3.818000e-01   p_joint 4.937000e-01

Outputting figure to mutsig2_images.part000000000103/MC4R.4_1003_10000_0.3558_0.3818_0.4937.png
                gene_name: MC4R
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 50 percent done.
MCF2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.652327e-02	ci left: 4.054184e-01	ci right 4.248311e-01	k: 4151	n:10000
KS ci ratio: 1.498109e-02	ci left: 8.659064e-01	ci right 8.790757e-01	k: 8726	n:10000
MCF2L   10000 perm   2 sec   (5633 perm/sec)   p_kst 8.726000e-01   p_cons 4.151000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MCF2L.4_3764_10000_0.8726_0.4151_1.png
                gene_name: MCF2L
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
MCM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.435967e-02	ci left: 4.286440e-01	ci right 4.481919e-01	k: 4384	n:10000
Cons ci ratio: 6.080366e-02	ci left: 2.845862e-01	ci right 3.025342e-01	k: 2935	n:10000
KS ci ratio: 5.514330e-02	ci left: 3.263440e-01	ci right 3.449518e-01	k: 3356	n:10000
MCM4   10000 perm   2 sec   (6138 perm/sec)   p_kst 3.356000e-01   p_cons 2.935000e-01   p_joint 4.384000e-01

Outputting figure to mutsig2_images.part000000000103/MCM4.4_2656_10000_0.3356_0.2935_0.4384.png
                gene_name: MCM4
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 53 percent done.
MCM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.197272e-02	ci left: 4.559843e-01	ci right 4.756356e-01	k: 4658	n:10000
Cons ci ratio: 1.055019e-01	ci left: 1.148645e-01	ci right 1.277571e-01	k: 1212	n:10000
KS ci ratio: 4.961818e-02	ci left: 3.746515e-01	ci right 3.938160e-01	k: 3842	n:10000
MCM6   10000 perm   2 sec   (6533 perm/sec)   p_kst 3.842000e-01   p_cons 1.212000e-01   p_joint 4.658000e-01

Joint ci ratio: 3.467352e-02	ci left: 3.830821e-01	ci right 3.966499e-01	k: 7797	n:20000
Cons ci ratio: 7.525703e-02	ci left: 1.149366e-01	ci right 1.239743e-01	k: 2388	n:20000
KS ci ratio: 3.542109e-02	ci left: 3.730168e-01	ci right 3.865182e-01	k: 7595	n:20000
MCM6   20000 perm   3 sec   (5798 perm/sec)   p_kst 3.797500e-01   p_cons 1.194000e-01   p_joint 3.898500e-01

Outputting figure to mutsig2_images.part000000000103/MCM6.4_2534_20000_0.37975_0.1194_0.38985.png
                gene_name: MCM6
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 55 percent done.
MCOLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.861921e-02	ci left: 1.912134e-01	ci right 2.069623e-01	k: 1990	n:10000
Cons ci ratio: 1.950272e-02	ci left: 7.936464e-01	ci right 8.093775e-01	k: 8016	n:10000
KS ci ratio: 1.528606e-01	ci left: 5.696592e-02	ci right 6.649137e-02	k: 616	n:10000
MCOLN1   10000 perm   1 sec   (6831 perm/sec)   p_kst 6.160000e-02   p_cons 8.016000e-01   p_joint 1.990000e-01

Joint ci ratio: 7.511428e-02	ci left: 1.153301e-01	ci right 1.243808e-01	k: 2396	n:20000
Cons ci ratio: 1.421162e-02	ci left: 7.861562e-01	ci right 7.974588e-01	k: 15837	n:20000
KS ci ratio: 1.107455e-01	ci left: 5.567637e-02	ci right 6.225258e-02	k: 1178	n:20000
MCOLN1   20000 perm   3 sec   (6094 perm/sec)   p_kst 5.890000e-02   p_cons 7.918500e-01   p_joint 1.198000e-01

Joint ci ratio: 5.899165e-02	ci left: 1.245023e-01	ci right 1.321032e-01	k: 3848	n:30000
Cons ci ratio: 1.165588e-02	ci left: 7.857159e-01	ci right 7.949611e-01	k: 23711	n:30000
KS ci ratio: 8.928937e-02	ci left: 5.766500e-02	ci right 6.308720e-02	k: 1810	n:30000
MCOLN1   30000 perm   5 sec   (5810 perm/sec)   p_kst 6.033333e-02   p_cons 7.903667e-01   p_joint 1.282667e-01

Outputting figure to mutsig2_images.part000000000103/MCOLN1.4_1799_30000_0.060333_0.79037_0.12827.png
                gene_name: MCOLN1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 56 percent done.
MDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.240852e-02	ci left: 7.451322e-01	ci right 7.621198e-01	k: 7537	n:10000
Cons ci ratio: 2.107331e-02	ci left: 7.674962e-01	ci right 7.839429e-01	k: 7758	n:10000
KS ci ratio: 3.548179e-02	ci left: 5.397853e-01	ci right 5.593858e-01	k: 5496	n:10000
MDC1   10000 perm   2 sec   (5037 perm/sec)   p_kst 5.496000e-01   p_cons 7.758000e-01   p_joint 7.537000e-01

Outputting figure to mutsig2_images.part000000000103/MDC1.4_6326_10000_0.5496_0.7758_0.7537.png
                gene_name: MDC1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 58 percent done.
MDM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.492999e-02	ci left: 7.030138e-01	ci right 7.208626e-01	k: 7120	n:10000
Cons ci ratio: 4.093336e-02	ci left: 4.684669e-01	ci right 4.881457e-01	k: 4783	n:10000
KS ci ratio: 3.764171e-02	ci left: 5.103535e-01	ci right 5.300347e-01	k: 5202	n:10000
MDM2   10000 perm   1 sec   (6936 perm/sec)   p_kst 5.202000e-01   p_cons 4.783000e-01   p_joint 7.120000e-01

Outputting figure to mutsig2_images.part000000000103/MDM2.4_1538_10000_0.5202_0.4783_0.712.png
                gene_name: MDM2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 59 percent done.
MAT2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.799618e-03	ci left: 9.580656e-01	ci right 9.656623e-01	k: 9620	n:10000
Cons ci ratio: 9.215698e-03	ci left: 9.431544e-01	ci right 9.519826e-01	k: 9477	n:10000
KS ci ratio: 3.690201e-02	ci left: 5.202604e-01	ci right 5.399221e-01	k: 5301	n:10000
MAT2B   10000 perm   1 sec   (7322 perm/sec)   p_kst 5.301000e-01   p_cons 9.477000e-01   p_joint 9.620000e-01

Outputting figure to mutsig2_images.part000000000103/MAT2B.3_1067_10000_0.5301_0.9477_0.962.png
                gene_name: MAT2B
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 61 percent done.
MATK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.860469e-02	ci left: 6.430738e-01	ci right 6.618374e-01	k: 6525	n:10000
Cons ci ratio: 3.241139e-02	ci left: 5.841983e-01	ci right 6.035469e-01	k: 5939	n:10000
KS ci ratio: 3.052986e-02	ci left: 6.128138e-01	ci right 6.319149e-01	k: 6224	n:10000
MATK   10000 perm   1 sec   (7405 perm/sec)   p_kst 6.224000e-01   p_cons 5.939000e-01   p_joint 6.525000e-01

Outputting figure to mutsig2_images.part000000000103/MATK.3_1655_10000_0.6224_0.5939_0.6525.png
                gene_name: MATK
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 62 percent done.
MATN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.124198e-02	ci left: 6.018656e-01	ci right 6.210694e-01	k: 6115	n:10000
Cons ci ratio: 1.579224e-02	ci left: 8.534524e-01	ci right 8.671370e-01	k: 8604	n:10000
KS ci ratio: 4.635127e-02	ci left: 4.072119e-01	ci right 4.266366e-01	k: 4169	n:10000
MATN3   10000 perm   2 sec   (6145 perm/sec)   p_kst 4.169000e-01   p_cons 8.604000e-01   p_joint 6.115000e-01

Outputting figure to mutsig2_images.part000000000103/MATN3.3_1493_10000_0.4169_0.8604_0.6115.png
                gene_name: MATN3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 64 percent done.
MBD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.236399e-02	ci left: 2.742845e-01	ci right 2.920420e-01	k: 2831	n:10000
Cons ci ratio: 3.818054e-02	ci left: 5.032509e-01	ci right 5.229414e-01	k: 5131	n:10000
KS ci ratio: 6.798590e-02	ci left: 2.409439e-01	ci right 2.580023e-01	k: 2494	n:10000
MBD2   10000 perm   1 sec   (6715 perm/sec)   p_kst 2.494000e-01   p_cons 5.131000e-01   p_joint 2.831000e-01

Outputting figure to mutsig2_images.part000000000103/MBD2.3_1471_10000_0.2494_0.5131_0.2831.png
                gene_name: MBD2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 66 percent done.
MBD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.124773e-01	ci left: 1.021764e-01	ci right 1.144528e-01	k: 1082	n:10000
Cons ci ratio: 1.214801e-01	ci left: 8.854359e-02	ci right 1.000940e-01	k: 942	n:10000
KS ci ratio: 2.357589e-01	ci left: 2.372311e-02	ci right 3.015646e-02	k: 268	n:10000
MBD4   10000 perm   1 sec   (6844 perm/sec)   p_kst 2.680000e-02   p_cons 9.420000e-02   p_joint 1.082000e-01

Joint ci ratio: 1.213959e-01	ci left: 4.653451e-02	ci right 5.259730e-02	k: 990	n:20000
Cons ci ratio: 8.668999e-02	ci left: 8.871513e-02	ci right 9.680371e-02	k: 1854	n:20000
KS ci ratio: 1.646773e-01	ci left: 2.527745e-02	ci right 2.986128e-02	k: 550	n:20000
MBD4   20000 perm   3 sec   (6066 perm/sec)   p_kst 2.750000e-02   p_cons 9.270000e-02   p_joint 4.950000e-02

Joint ci ratio: 1.719246e-01	ci left: 1.556744e-02	ci right 1.852716e-02	k: 510	n:30000
Cons ci ratio: 6.650031e-02	ci left: 1.003376e-01	ci right 1.072726e-01	k: 3113	n:30000
KS ci ratio: 1.332622e-01	ci left: 2.616234e-02	ci right 2.992980e-02	k: 840	n:30000
MBD4   30000 perm   5 sec   (5774 perm/sec)   p_kst 2.800000e-02   p_cons 1.037667e-01   p_joint 1.700000e-02

Joint ci ratio: 1.666096e-01	ci left: 1.251184e-02	ci right 1.480957e-02	k: 545	n:40000
Cons ci ratio: 5.791855e-02	ci left: 9.976619e-02	ci right 1.057416e-01	k: 4109	n:40000
KS ci ratio: 1.148481e-01	ci left: 2.667242e-02	ci right 2.994654e-02	k: 1131	n:40000
MBD4   40000 perm   7 sec   (5585 perm/sec)   p_kst 2.827500e-02   p_cons 1.027250e-01   p_joint 1.362500e-02

Joint ci ratio: 9.257264e-02	ci left: 3.301509e-02	ci right 3.623923e-02	k: 1730	n:50000
Cons ci ratio: 5.190825e-02	ci left: 9.971621e-02	ci right 1.050501e-01	k: 5118	n:50000
KS ci ratio: 1.017653e-01	ci left: 2.735147e-02	ci right 3.030357e-02	k: 1440	n:50000
MBD4   50000 perm   9 sec   (5417 perm/sec)   p_kst 2.880000e-02   p_cons 1.023600e-01   p_joint 3.460000e-02

Joint ci ratio: 1.122134e-01	ci left: 1.881368e-02	ci right 2.106643e-02	k: 1195	n:60000
Cons ci ratio: 4.737185e-02	ci left: 1.000016e-01	ci right 1.048703e-01	k: 6145	n:60000
KS ci ratio: 9.301514e-02	ci left: 2.741113e-02	ci right 3.010138e-02	k: 1724	n:60000
MBD4   60000 perm   11 sec   (5254 perm/sec)   p_kst 2.873333e-02   p_cons 1.024167e-01   p_joint 1.991667e-02

Joint ci ratio: 7.727572e-02	ci left: 3.408529e-02	ci right 3.683910e-02	k: 2481	n:70000
Cons ci ratio: 4.377401e-02	ci left: 1.005313e-01	ci right 1.050446e-01	k: 7194	n:70000
KS ci ratio: 8.623678e-02	ci left: 2.743362e-02	ci right 2.991995e-02	k: 2006	n:70000
MBD4   70000 perm   14 sec   (5145 perm/sec)   p_kst 2.865714e-02   p_cons 1.027714e-01   p_joint 3.544286e-02

Outputting figure to mutsig2_images.part000000000103/MBD4.3_1775_70000_0.028657_0.10277_0.035443.png
                gene_name: MBD4
               theta_stop: 0.086 
                    nperm: 70000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.037 

Current progress: 67 percent done.
MBNL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.003386e-02	ci left: 4.795567e-01	ci right 4.992495e-01	k: 4894	n:10000
Cons ci ratio: 2.964659e-02	ci left: 6.265817e-01	ci right 6.455390e-01	k: 6361	n:10000
KS ci ratio: 7.632823e-02	ci left: 2.006723e-01	ci right 2.166978e-01	k: 2086	n:10000
MBNL2   10000 perm   1 sec   (7154 perm/sec)   p_kst 2.086000e-01   p_cons 6.361000e-01   p_joint 4.894000e-01

Outputting figure to mutsig2_images.part000000000103/MBNL2.3_1249_10000_0.2086_0.6361_0.4894.png
                gene_name: MBNL2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 69 percent done.
MBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.852541e-03	ci left: 9.824212e-01	ci right 9.872903e-01	k: 9850	n:10000
Cons ci ratio: 1.906036e-02	ci left: 8.009530e-01	ci right 8.164667e-01	k: 8088	n:10000
KS ci ratio: 2.059430e-02	ci left: 7.754984e-01	ci right 7.917361e-01	k: 7837	n:10000
MBP   10000 perm   1 sec   (7320 perm/sec)   p_kst 7.837000e-01   p_cons 8.088000e-01   p_joint 9.850000e-01

Outputting figure to mutsig2_images.part000000000103/MBP.3_1047_10000_0.7837_0.8088_0.985.png
                gene_name: MBP
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 70 percent done.
MCAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.675954e-02	ci left: 6.728712e-01	ci right 6.912227e-01	k: 6821	n:10000
Cons ci ratio: 6.724503e-03	ci left: 9.680482e-01	ci right 9.746734e-01	k: 9715	n:10000
KS ci ratio: 5.224432e-02	ci left: 3.506835e-01	ci right 3.695981e-01	k: 3601	n:10000
MCAM   10000 perm   1 sec   (7143 perm/sec)   p_kst 3.601000e-01   p_cons 9.715000e-01   p_joint 6.821000e-01

Outputting figure to mutsig2_images.part000000000103/MCAM.3_2005_10000_0.3601_0.9715_0.6821.png
                gene_name: MCAM
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 72 percent done.
MCHR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.090642e-02	ci left: 2.838926e-01	ci right 3.018282e-01	k: 2928	n:10000
Cons ci ratio: 8.475817e-02	ci left: 1.686795e-01	ci right 1.837096e-01	k: 1761	n:10000
KS ci ratio: 1.391793e-02	ci left: 8.817580e-01	ci right 8.942150e-01	k: 8881	n:10000
MCHR2   10000 perm   1 sec   (6992 perm/sec)   p_kst 8.881000e-01   p_cons 1.761000e-01   p_joint 2.928000e-01

Outputting figure to mutsig2_images.part000000000103/MCHR2.3_1043_10000_0.8881_0.1761_0.2928.png
                gene_name: MCHR2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 73 percent done.
MCM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.556899e-02	ci left: 4.154834e-01	ci right 4.349602e-01	k: 4252	n:10000
Cons ci ratio: 1.085809e-01	ci left: 1.090053e-01	ci right 1.216198e-01	k: 1152	n:10000
KS ci ratio: 9.427224e-03	ci left: 9.407656e-01	ci right 9.497727e-01	k: 9454	n:10000
MCM3   10000 perm   2 sec   (6415 perm/sec)   p_kst 9.454000e-01   p_cons 1.152000e-01   p_joint 4.252000e-01

Joint ci ratio: 3.299839e-02	ci left: 4.068126e-01	ci right 4.205125e-01	k: 8273	n:20000
Cons ci ratio: 7.532867e-02	ci left: 1.147399e-01	ci right 1.237711e-01	k: 2384	n:20000
KS ci ratio: 6.631376e-03	ci left: 9.426745e-01	ci right 9.489951e-01	k: 18918	n:20000
MCM3   20000 perm   4 sec   (5684 perm/sec)   p_kst 9.459000e-01   p_cons 1.192000e-01   p_joint 4.136500e-01

Outputting figure to mutsig2_images.part000000000103/MCM3.3_2495_20000_0.9459_0.1192_0.41365.png
                gene_name: MCM3
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 75 percent done.
MCM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.552184e-02	ci left: 8.576357e-01	ci right 8.711513e-01	k: 8645	n:10000
Cons ci ratio: 2.701279e-02	ci left: 6.687414e-01	ci right 6.871549e-01	k: 6780	n:10000
KS ci ratio: 4.243945e-02	ci left: 4.504939e-01	ci right 4.701293e-01	k: 4603	n:10000
MCM7   10000 perm   1 sec   (6715 perm/sec)   p_kst 4.603000e-01   p_cons 6.780000e-01   p_joint 8.645000e-01

Outputting figure to mutsig2_images.part000000000103/MCM7.3_2220_10000_0.4603_0.678_0.8645.png
                gene_name: MCM7
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 77 percent done.
MCM9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.299980e-02	ci left: 7.352249e-01	ci right 7.524328e-01	k: 7439	n:10000
Cons ci ratio: 4.052554e-02	ci left: 4.734617e-01	ci right 4.931480e-01	k: 4833	n:10000
KS ci ratio: 3.652600e-02	ci left: 5.253654e-01	ci right 5.450141e-01	k: 5352	n:10000
MCM9   10000 perm   1 sec   (7178 perm/sec)   p_kst 5.352000e-01   p_cons 4.833000e-01   p_joint 7.439000e-01

Outputting figure to mutsig2_images.part000000000103/MCM9.3_1200_10000_0.5352_0.4833_0.7439.png
                gene_name: MCM9
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 78 percent done.
MCRS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.226434e-02	ci left: 9.051459e-01	ci right 9.164135e-01	k: 9109	n:10000
KS ci ratio: 1.063575e-02	ci left: 9.263722e-01	ci right 9.363747e-01	k: 9315	n:10000
MCRS1   10000 perm   1 sec   (6761 perm/sec)   p_kst 9.315000e-01   p_cons 9.109000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MCRS1.3_1498_10000_0.9315_0.9109_1.png
                gene_name: MCRS1
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
MDM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.726880e-02	ci left: 3.977478e-01	ci right 4.171061e-01	k: 4074	n:10000
Cons ci ratio: 5.291978e-02	ci left: 3.448197e-01	ci right 3.636653e-01	k: 3542	n:10000
KS ci ratio: 1.114983e-01	ci left: 1.038342e-01	ci right 1.161941e-01	k: 1099	n:10000
MDM4   10000 perm   1 sec   (7034 perm/sec)   p_kst 1.099000e-01   p_cons 3.542000e-01   p_joint 4.074000e-01

Joint ci ratio: 4.597360e-02	ci left: 2.604314e-01	ci right 2.727365e-01	k: 5331	n:20000
Cons ci ratio: 3.727309e-02	ci left: 3.494102e-01	ci right 3.627317e-01	k: 7121	n:20000
KS ci ratio: 8.020090e-02	ci left: 1.024046e-01	ci right 1.110102e-01	k: 2133	n:20000
MDM4   20000 perm   3 sec   (6225 perm/sec)   p_kst 1.066500e-01   p_cons 3.560500e-01   p_joint 2.665500e-01

Outputting figure to mutsig2_images.part000000000103/MDM4.3_1513_20000_0.10665_0.35605_0.26655.png
                gene_name: MDM4
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 81 percent done.
ME2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.845427e-02	ci left: 8.109049e-01	ci right 8.261091e-01	k: 8186	n:10000
KS ci ratio: 1.495415e-02	ci left: 8.663151e-01	ci right 8.794668e-01	k: 8730	n:10000
ME2   10000 perm   1 sec   (6845 perm/sec)   p_kst 8.730000e-01   p_cons 8.186000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/ME2.3_1815_10000_0.873_0.8186_1.png
                gene_name: ME2
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
MATN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.051037e-02	ci left: 9.279223e-01	ci right 9.378237e-01	k: 9330	n:10000
KS ci ratio: 4.392995e-02	ci left: 4.334314e-01	ci right 4.530017e-01	k: 4432	n:10000
MATN1   10000 perm   1 sec   (7459 perm/sec)   p_kst 4.432000e-01   p_cons 9.330000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MATN1.2_1523_10000_0.4432_0.933_1.png
                gene_name: MATN1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
MAVS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.419256e-03	ci left: 9.617346e-01	ci right 9.689910e-01	k: 9655	n:10000
KS ci ratio: 1.340890e-02	ci left: 8.891337e-01	ci right 9.012350e-01	k: 8953	n:10000
MAVS   10000 perm   1 sec   (7395 perm/sec)   p_kst 8.953000e-01   p_cons 9.655000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MAVS.2_1647_10000_0.8953_0.9655_1.png
                gene_name: MAVS
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
MBLAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.394590e-02	ci left: 8.813485e-01	ci right 8.938247e-01	k: 8877	n:10000
KS ci ratio: 4.046880e-02	ci left: 4.741611e-01	ci right 4.938483e-01	k: 4840	n:10000
MBLAC1   10000 perm   1 sec   (7924 perm/sec)   p_kst 4.840000e-01   p_cons 8.877000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MBLAC1.2_805_10000_0.484_0.8877_1.png
                gene_name: MBLAC1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
MBNL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.606061e-02	ci left: 8.492710e-01	ci right 8.631208e-01	k: 8563	n:10000
Cons ci ratio: 7.837355e-02	ci left: 1.921984e-01	ci right 2.079767e-01	k: 2000	n:10000
KS ci ratio: 3.635751e-02	ci left: 5.276680e-01	ci right 5.473101e-01	k: 5375	n:10000
MBNL3   10000 perm   1 sec   (7439 perm/sec)   p_kst 5.375000e-01   p_cons 2.000000e-01   p_joint 8.563000e-01

Outputting figure to mutsig2_images.part000000000103/MBNL3.2_1189_10000_0.5375_0.2_0.8563.png
                gene_name: MBNL3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 89 percent done.
MCART1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.866011e-03	ci left: 9.356838e-01	ci right 9.450576e-01	k: 9405	n:10000
Cons ci ratio: 3.350465e-02	ci left: 5.680480e-01	ci right 5.875066e-01	k: 5778	n:10000
KS ci ratio: 3.200320e-02	ci left: 5.903202e-01	ci right 6.096215e-01	k: 6000	n:10000
MCART1   10000 perm   1 sec   (7620 perm/sec)   p_kst 6.000000e-01   p_cons 5.778000e-01   p_joint 9.405000e-01

Outputting figure to mutsig2_images.part000000000103/MCART1.2_898_10000_0.6_0.5778_0.9405.png
                gene_name: MCART1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 91 percent done.
MCART6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.995523e-02	ci left: 7.861410e-01	ci right 8.020873e-01	k: 7942	n:10000
KS ci ratio: 4.444986e-02	ci left: 4.276467e-01	ci right 4.471898e-01	k: 4374	n:10000
MCART6   10000 perm   1 sec   (7652 perm/sec)   p_kst 4.374000e-01   p_cons 7.942000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MCART6.2_928_10000_0.4374_0.7942_1.png
                gene_name: MCART6
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
MCCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.010744e-02	ci left: 2.893427e-01	ci right 3.073749e-01	k: 2983	n:10000
Cons ci ratio: 7.914066e-02	ci left: 1.891452e-01	ci right 2.048317e-01	k: 1969	n:10000
KS ci ratio: 1.450035e-01	ci left: 6.314223e-02	ci right 7.311115e-02	k: 680	n:10000
MCCC2   10000 perm   1 sec   (6995 perm/sec)   p_kst 6.800000e-02   p_cons 1.969000e-01   p_joint 2.983000e-01

Joint ci ratio: 4.319785e-02	ci left: 2.853067e-01	ci right 2.979539e-01	k: 5832	n:20000
Cons ci ratio: 5.619260e-02	ci left: 1.901717e-01	ci right 2.012170e-01	k: 3913	n:20000
KS ci ratio: 1.029005e-01	ci left: 6.415862e-02	ci right 7.116771e-02	k: 1352	n:20000
MCCC2   20000 perm   3 sec   (6209 perm/sec)   p_kst 6.760000e-02   p_cons 1.956500e-01   p_joint 2.916000e-01

Joint ci ratio: 2.990314e-02	ci left: 3.587182e-01	ci right 3.696414e-01	k: 10925	n:30000
Cons ci ratio: 4.616497e-02	ci left: 1.892742e-01	ci right 1.982518e-01	k: 5812	n:30000
KS ci ratio: 8.456727e-02	ci left: 6.400009e-02	ci right 6.968414e-02	k: 2004	n:30000
MCCC2   30000 perm   5 sec   (5901 perm/sec)   p_kst 6.680000e-02   p_cons 1.937333e-01   p_joint 3.641667e-01

Outputting figure to mutsig2_images.part000000000103/MCCC2.2_1760_30000_0.0668_0.19373_0.36417.png
                gene_name: MCCC2
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 94 percent done.
MCEE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.874991e-02	ci left: 4.958504e-01	ci right 5.155463e-01	k: 5057	n:10000
Cons ci ratio: 2.008330e-02	ci left: 7.840118e-01	ci right 8.000177e-01	k: 7921	n:10000
KS ci ratio: 6.002142e-02	ci left: 2.899374e-01	ci right 3.079799e-01	k: 2989	n:10000
MCEE   10000 perm   1 sec   (8181 perm/sec)   p_kst 2.989000e-01   p_cons 7.921000e-01   p_joint 5.057000e-01

Outputting figure to mutsig2_images.part000000000103/MCEE.2_543_10000_0.2989_0.7921_0.5057.png
                gene_name: MCEE
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 95 percent done.
MCM8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.751719e-02	ci left: 2.435138e-01	ci right 2.606309e-01	k: 2520	n:10000
KS ci ratio: 2.566713e-02	ci left: 6.908102e-01	ci right 7.088733e-01	k: 6999	n:10000
MCM8   10000 perm   1 sec   (6738 perm/sec)   p_kst 6.999000e-01   p_cons 2.520000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000103/MCM8.2_2595_10000_0.6999_0.252_1.png
                gene_name: MCM8
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
MCOLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.312049e-02	ci left: 7.332037e-01	ci right 7.504552e-01	k: 7419	n:10000
Cons ci ratio: 3.593554e-02	ci left: 5.334756e-01	ci right 5.530992e-01	k: 5433	n:10000
KS ci ratio: 3.124198e-02	ci left: 6.018656e-01	ci right 6.210694e-01	k: 6115	n:10000
MCOLN2   10000 perm   1 sec   (7299 perm/sec)   p_kst 6.115000e-01   p_cons 5.433000e-01   p_joint 7.419000e-01

Outputting figure to mutsig2_images.part000000000103/MCOLN2.2_1757_10000_0.6115_0.5433_0.7419.png
                gene_name: MCOLN2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 98 percent done.
MDM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.318717e-03	ci left: 9.626796e-01	ci right 9.698454e-01	k: 9664	n:10000
Cons ci ratio: 3.872667e-02	ci left: 4.961503e-01	ci right 5.158462e-01	k: 5060	n:10000
KS ci ratio: 1.628821e-02	ci left: 8.457031e-01	ci right 8.596908e-01	k: 8528	n:10000
MDM1   10000 perm   1 sec   (6943 perm/sec)   p_kst 8.528000e-01   p_cons 5.060000e-01   p_joint 9.664000e-01

Outputting figure to mutsig2_images.part000000000103/MDM1.2_2372_10000_0.8528_0.506_0.9664.png
                gene_name: MDM1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000103
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 103 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1532>
Subject: Job 9894014: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1532>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000104> was used as the working directory.
Started at Sat Oct  6 00:17:58 2012
Results reported at Sat Oct  6 00:33:24 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000104.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000104.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 104  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000104.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1015.80 sec.
    Max Memory :      3664 MB
    Max Swap   :      5991 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
104
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 104
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 104: processing genes 9286 - 9376
Calculating significance of each gene.
Using projection method.
9286	MEAF6	1.311502e-01
9287	MECOM	1.756271e-01
9288	MECP2	6.006452e-01
9289	MECR	7.319520e-01
9290	MED1	7.917330e-01
9291	MED10	1
9292	MED11	1
9293	MED12	4.501376e-01
9294	MED12L	3.988496e-01
9295	MED13	8.423274e-01
9296	MED13L	4.722762e-01
9297	MED14	5.939126e-01
In gene MED15 the following bins exceed PROBCAP:
    COAD-AA-A004	categ 6	N = 2417    n = 1	mu =   1.64e-07
9298	MED15	8.954531e-01
9299	MED16	9.823288e-01
9300	MED17	8.880080e-01
9301	MED18	5.184608e-01
9302	MED19	1
9303	MED20	1
9304	MED21	1
9305	MED22	5.900150e-01
9306	MED23	3.553297e-01
9307	MED24	3.835549e-01
9308	MED25	9.814477e-01
9309	MED26	1
9310	MED27	5.507236e-01
9311	MED28	1
9312	MED29	1
9313	MED30	1
9314	MED31	2.344562e-01
9315	MED4	4.319151e-01
9316	MED6	1
9317	MED7	6.914149e-01
9318	MED8	7.420895e-02
9319	MED9	5.854871e-01
9320	MEF2A	4.645421e-01
9321	MEF2B	1
9322	MEF2C	1.299475e-01
9323	MEF2D	8.815670e-01
9324	MEFV	9.631131e-01
9325	MEGF10	3.033315e-01
9326	MEGF11	4.143169e-01
9327	MEGF6	9.957376e-01
9328	MEGF8	9.839309e-01
9329	MEGF9	7.872242e-01
9330	MEI1	7.754434e-01
9331	MEIG1	1
9332	MEIS1	5.367508e-02
9333	MEIS2	2.684810e-01
9334	MEIS3	9.336030e-02
9335	MELK	2.395665e-01
9336	MEMO1	1.587788e-01
9337	MEN1	6.518677e-01
9338	MEOX1	4.484131e-01
9339	MEOX2	1
9340	MEP1A	9.107217e-01
9341	MEP1B	4.544991e-01
9342	MEPCE	5.417317e-01
9343	MEPE	5.317812e-02
9344	MERTK	4.457525e-01
9345	MESDC1	1
9346	MESDC2	7.160408e-03
9347	MESP1	1
9348	MESP2	1
9349	MEST	4.304963e-01
9350	MET	9.474525e-01
9351	METAP1	6.269083e-01
9352	METAP2	8.975951e-01
9353	METRNL	3.437962e-01
9354	METT10D	1.778892e-01
9355	METT11D1	7.054699e-01
9356	METT5D1	5.571593e-01
9357	METTL1	7.252660e-01
9358	METTL10	5.174927e-01
9359	METTL11A	1
9360	METTL12	5.305987e-01
9361	METTL13	6.900071e-02
9362	METTL14	4.243195e-01
9363	METTL2A	1
9364	METTL2B	5.121350e-01
9365	METTL3	2.030192e-01
9366	METTL4	1
9367	METTL5	2.310968e-01
9368	METTL6	1.806733e-02
9369	METTL7A	8.002373e-02
9370	METTL7B	6.672342e-01
9371	METTL8	1.387070e-01
9372	METTL9	1
9373	MEX3A	9.699653e-01
9374	MEX3B	9.057308e-01
9375	MEX3C	4.855842e-01
9376	MFAP1	1
Done

Running MutSig 2:
Scatter job 104: processing genes 9286 - 9376
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MED12L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.201258e-02	ci left: 2.765622e-01	ci right 2.943629e-01	k: 2854	n:10000
Cons ci ratio: 4.714180e-02	ci left: 3.990427e-01	ci right 4.184105e-01	k: 4087	n:10000
KS ci ratio: 6.945106e-02	ci left: 2.331377e-01	ci right 2.500131e-01	k: 2415	n:10000
MED12L   10000 perm   4 sec   (2641 perm/sec)   p_kst 2.415000e-01   p_cons 4.087000e-01   p_joint 2.854000e-01

Outputting figure to mutsig2_images.part000000000104/MED12L.17_6610_10000_0.2415_0.4087_0.2854.png
                gene_name: MED12L
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 2 percent done.
MED13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.034513e-02	ci left: 7.796531e-01	ci right 7.957789e-01	k: 7878	n:10000
KS ci ratio: 1.528263e-02	ci left: 8.613106e-01	ci right 8.746743e-01	k: 8681	n:10000
MED13   10000 perm   3 sec   (3044 perm/sec)   p_kst 8.681000e-01   p_cons 7.878000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MED13.12_6645_10000_0.8681_0.7878_1.png
                gene_name: MED13
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
MED12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.925687e-02	ci left: 4.893516e-01	ci right 5.090488e-01	k: 4992	n:10000
KS ci ratio: 1.773593e-02	ci left: 8.225936e-01	ci right 8.374136e-01	k: 8301	n:10000
MED12   10000 perm   3 sec   (3112 perm/sec)   p_kst 8.301000e-01   p_cons 4.992000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MED12.11_6714_10000_0.8301_0.4992_1.png
                gene_name: MED12
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
MED13L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.015418e-02	ci left: 4.780578e-01	ci right 4.977493e-01	k: 4879	n:10000
KS ci ratio: 1.717997e-02	ci left: 8.315462e-01	ci right 8.460558e-01	k: 8389	n:10000
MED13L   10000 perm   4 sec   (2790 perm/sec)   p_kst 8.389000e-01   p_cons 4.879000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MED13L.11_6757_10000_0.8389_0.4879_1.png
                gene_name: MED13L
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
MECOM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.900160e-01	ci left: 8.053309e-03	ci right 1.203990e-02	k: 99	n:10000
Cons ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
KS ci ratio: 1.106525e-01	ci left: 1.052972e-01	ci right 1.177301e-01	k: 1114	n:10000
MECOM   10000 perm   3 sec   (3760 perm/sec)   p_kst 1.114000e-01   p_cons 9.400000e-03   p_joint 9.900000e-03

Joint ci ratio: 1.831122e-01	ci left: 2.034603e-02	ci right 2.449443e-02	k: 447	n:20000
Cons ci ratio: 2.800644e-01	ci left: 8.341806e-03	ci right 1.110354e-02	k: 193	n:20000
KS ci ratio: 8.043316e-02	ci left: 1.018644e-01	ci right 1.104505e-01	k: 2122	n:20000
MECOM   20000 perm   6 sec   (3404 perm/sec)   p_kst 1.061000e-01   p_cons 9.650000e-03   p_joint 2.235000e-02

Joint ci ratio: 2.006145e-01	ci left: 1.130517e-02	ci right 1.385719e-02	k: 376	n:30000
Cons ci ratio: 2.197008e-01	ci left: 9.345984e-03	ci right 1.168360e-02	k: 314	n:30000
KS ci ratio: 6.303110e-02	ci left: 1.105889e-01	ci right 1.178193e-01	k: 3425	n:30000
MECOM   30000 perm   9 sec   (3252 perm/sec)   p_kst 1.141667e-01   p_cons 1.046667e-02   p_joint 1.253333e-02

Joint ci ratio: 1.537051e-01	ci left: 1.476904e-02	ci right 1.725194e-02	k: 639	n:40000
Cons ci ratio: 1.925979e-01	ci left: 9.262315e-03	ci right 1.125974e-02	k: 409	n:40000
KS ci ratio: 5.452608e-02	ci left: 1.112963e-01	ci right 1.175598e-01	k: 4576	n:40000
MECOM   40000 perm   13 sec   (3096 perm/sec)   p_kst 1.144000e-01   p_cons 1.022500e-02   p_joint 1.597500e-02

Joint ci ratio: 1.534701e-01	ci left: 1.189078e-02	ci right 1.388637e-02	k: 643	n:50000
Cons ci ratio: 1.744273e-01	ci left: 9.127276e-03	ci right 1.089031e-02	k: 499	n:50000
KS ci ratio: 4.886741e-02	ci left: 1.112268e-01	ci right 1.168181e-01	k: 5700	n:50000
MECOM   50000 perm   17 sec   (2997 perm/sec)   p_kst 1.140000e-01   p_cons 9.980000e-03   p_joint 1.286000e-02

Joint ci ratio: 1.653216e-01	ci left: 8.515465e-03	ci right 1.006589e-02	k: 556	n:60000
Cons ci ratio: 1.573855e-01	ci left: 9.427460e-03	ci right 1.105377e-02	k: 613	n:60000
KS ci ratio: 4.477310e-02	ci left: 1.107413e-01	ci right 1.158296e-01	k: 6796	n:60000
MECOM   60000 perm   20 sec   (2969 perm/sec)   p_kst 1.132667e-01   p_cons 1.021667e-02   p_joint 9.266667e-03

Joint ci ratio: 1.582840e-01	ci left: 7.997876e-03	ci right 9.386168e-03	k: 607	n:70000
Cons ci ratio: 1.454376e-01	ci left: 9.523951e-03	ci right 1.103134e-02	k: 718	n:70000
KS ci ratio: 4.150452e-02	ci left: 1.106778e-01	ci right 1.153829e-01	k: 7911	n:70000
MECOM   70000 perm   24 sec   (2954 perm/sec)   p_kst 1.130143e-01   p_cons 1.025714e-02   p_joint 8.671429e-03

Joint ci ratio: 1.166261e-01	ci left: 1.311227e-02	ci right 1.474826e-02	k: 1113	n:80000
Cons ci ratio: 1.374641e-01	ci left: 9.370380e-03	ci right 1.076549e-02	k: 804	n:80000
KS ci ratio: 3.890960e-02	ci left: 1.103926e-01	ci right 1.147855e-01	k: 9006	n:80000
MECOM   80000 perm   27 sec   (2922 perm/sec)   p_kst 1.125750e-01   p_cons 1.005000e-02   p_joint 1.391250e-02

Joint ci ratio: 9.212111e-02	ci left: 1.881291e-02	ci right 2.064046e-02	k: 1774	n:90000
Cons ci ratio: 1.227128e-01	ci left: 1.052271e-02	ci right 1.190907e-02	k: 1008	n:90000
KS ci ratio: 3.667593e-02	ci left: 1.105638e-01	ci right 1.147056e-01	k: 10136	n:90000
MECOM   90000 perm   31 sec   (2925 perm/sec)   p_kst 1.126222e-01   p_cons 1.120000e-02   p_joint 1.971111e-02

Joint ci ratio: 8.323197e-02	ci left: 2.079604e-02	ci right 2.261185e-02	k: 2169	n:100000
Cons ci ratio: 1.143254e-01	ci left: 1.095526e-02	ci right 1.229330e-02	k: 1161	n:100000
KS ci ratio: 3.478399e-02	ci left: 1.107265e-01	ci right 1.146560e-01	k: 11268	n:100000
MECOM   100000 perm   35 sec   (2890 perm/sec)   p_kst 1.126800e-01   p_cons 1.161000e-02   p_joint 2.169000e-02

Joint ci ratio: 8.705268e-02	ci left: 1.731147e-02	ci right 1.889590e-02	k: 1990	n:110000
Cons ci ratio: 1.077414e-01	ci left: 1.124985e-02	ci right 1.253972e-02	k: 1307	n:110000
KS ci ratio: 3.316208e-02	ci left: 1.108369e-01	ci right 1.145835e-01	k: 12397	n:110000
MECOM   110000 perm   38 sec   (2862 perm/sec)   p_kst 1.127000e-01   p_cons 1.188182e-02   p_joint 1.809091e-02

Joint ci ratio: 8.770368e-02	ci left: 1.565632e-02	ci right 1.710052e-02	k: 1964	n:120000
Cons ci ratio: 1.106533e-01	ci left: 9.776963e-03	ci right 1.093022e-02	k: 1241	n:120000
KS ci ratio: 3.170287e-02	ci left: 1.112139e-01	ci right 1.148048e-01	k: 13560	n:120000
MECOM   120000 perm   42 sec   (2848 perm/sec)   p_kst 1.130000e-01   p_cons 1.034167e-02   p_joint 1.636667e-02

Joint ci ratio: 8.835524e-02	ci left: 1.425593e-02	ci right 1.558122e-02	k: 1938	n:130000
Cons ci ratio: 1.057381e-01	ci left: 9.908059e-03	ci right 1.102163e-02	k: 1359	n:130000
KS ci ratio: 3.049201e-02	ci left: 1.110699e-01	ci right 1.145167e-01	k: 14662	n:130000
MECOM   130000 perm   46 sec   (2819 perm/sec)   p_kst 1.127846e-01   p_cons 1.045385e-02   p_joint 1.490769e-02

Joint ci ratio: 7.902658e-02	ci left: 1.658842e-02	ci right 1.796025e-02	k: 2417	n:140000
Cons ci ratio: 1.013898e-01	ci left: 1.002836e-02	ci right 1.110634e-02	k: 1478	n:140000
KS ci ratio: 2.934507e-02	ci left: 1.113887e-01	ci right 1.147131e-01	k: 15826	n:140000
MECOM   140000 perm   50 sec   (2776 perm/sec)   p_kst 1.130429e-01   p_cons 1.055714e-02   p_joint 1.726429e-02

Joint ci ratio: 7.820623e-02	ci left: 1.582867e-02	ci right 1.712345e-02	k: 2470	n:150000
Cons ci ratio: 9.806586e-02	ci left: 1.002284e-02	ci right 1.106288e-02	k: 1580	n:150000
KS ci ratio: 2.831381e-02	ci left: 1.117001e-01	ci right 1.149148e-01	k: 16995	n:150000
MECOM   150000 perm   56 sec   (2699 perm/sec)   p_kst 1.133000e-01   p_cons 1.053333e-02   p_joint 1.646667e-02

Outputting figure to mutsig2_images.part000000000104/MECOM.10_3798_150000_0.1133_0.010533_0.016467.png
                gene_name: MECOM
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.010 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 10 percent done.
MEGF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.082408e-02	ci left: 3.634102e-01	ci right 3.824638e-01	k: 3729	n:10000
Cons ci ratio: 4.618837e-03	ci left: 9.839328e-01	ci right 9.885776e-01	k: 9864	n:10000
KS ci ratio: 6.998584e-02	ci left: 2.303719e-01	ci right 2.471805e-01	k: 2387	n:10000
MEGF8   10000 perm   4 sec   (2449 perm/sec)   p_kst 2.387000e-01   p_cons 9.864000e-01   p_joint 3.729000e-01

Outputting figure to mutsig2_images.part000000000104/MEGF8.10_8501_10000_0.2387_0.9864_0.3729.png
                gene_name: MEGF8
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 12 percent done.
MED23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.129120e-02	ci left: 7.638510e-01	ci right 7.803902e-01	k: 7722	n:10000
KS ci ratio: 1.859697e-02	ci left: 8.085685e-01	ci right 8.238468e-01	k: 8163	n:10000
MED23   10000 perm   3 sec   (3989 perm/sec)   p_kst 8.163000e-01   p_cons 7.722000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MED23.9_4252_10000_0.8163_0.7722_1.png
                gene_name: MED23
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
MEF2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.797425e-02	ci left: 8.187299e-01	ci right 8.336795e-01	k: 8263	n:10000
Cons ci ratio: 2.156933e-02	ci left: 7.591946e-01	ci right 7.758493e-01	k: 7676	n:10000
KS ci ratio: 3.444063e-02	ci left: 5.545140e-01	ci right 5.740485e-01	k: 5643	n:10000
MEF2C   10000 perm   2 sec   (5396 perm/sec)   p_kst 5.643000e-01   p_cons 7.676000e-01   p_joint 8.263000e-01

Outputting figure to mutsig2_images.part000000000104/MEF2C.9_1604_10000_0.5643_0.7676_0.8263.png
                gene_name: MEF2C
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 16 percent done.
METT10D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.257205e-01	ci left: 8.300372e-02	ci right 9.423727e-02	k: 885	n:10000
Cons ci ratio: 2.998689e-01	ci left: 1.427992e-02	ci right 1.940710e-02	k: 167	n:10000
KS ci ratio: 5.983582e-02	ci left: 2.912258e-01	ci right 3.092906e-01	k: 3002	n:10000
METT10D   10000 perm   2 sec   (5127 perm/sec)   p_kst 3.002000e-01   p_cons 1.670000e-02   p_joint 8.850000e-02

Joint ci ratio: 1.104967e-01	ci left: 5.591985e-02	ci right 6.250903e-02	k: 1183	n:20000
Cons ci ratio: 2.205424e-01	ci left: 1.383370e-02	ci right 1.730922e-02	k: 310	n:20000
KS ci ratio: 4.290693e-02	ci left: 2.880887e-01	ci right 3.007711e-01	k: 5888	n:20000
METT10D   20000 perm   4 sec   (4547 perm/sec)   p_kst 2.944000e-01   p_cons 1.550000e-02   p_joint 5.915000e-02

Joint ci ratio: 1.085382e-01	ci left: 3.940081e-02	ci right 4.395516e-02	k: 1249	n:30000
Cons ci ratio: 1.805657e-01	ci left: 1.406885e-02	ci right 1.689278e-02	k: 463	n:30000
KS ci ratio: 3.468113e-02	ci left: 2.934576e-01	ci right 3.038481e-01	k: 8959	n:30000
METT10D   30000 perm   7 sec   (4029 perm/sec)   p_kst 2.986333e-01   p_cons 1.543333e-02   p_joint 4.163333e-02

Joint ci ratio: 9.661803e-02	ci left: 3.761217e-02	ci right 4.145504e-02	k: 1580	n:40000
Cons ci ratio: 1.568479e-01	ci left: 1.416799e-02	ci right 1.660311e-02	k: 614	n:40000
KS ci ratio: 3.014746e-02	ci left: 2.925991e-01	ci right 3.015803e-01	k: 11883	n:40000
METT10D   40000 perm   11 sec   (3786 perm/sec)   p_kst 2.970750e-01   p_cons 1.535000e-02   p_joint 3.950000e-02

Joint ci ratio: 8.810855e-02	ci left: 3.639972e-02	ci right 3.977418e-02	k: 1903	n:50000
Cons ci ratio: 1.409190e-01	ci left: 1.416512e-02	ci right 1.633170e-02	k: 761	n:50000
KS ci ratio: 2.701775e-02	ci left: 2.922597e-01	ci right 3.002840e-01	k: 14813	n:50000
METT10D   50000 perm   13 sec   (3782 perm/sec)   p_kst 2.962600e-01   p_cons 1.522000e-02   p_joint 3.806000e-02

Joint ci ratio: 6.962214e-02	ci left: 4.843348e-02	ci right 5.194352e-02	k: 3010	n:60000
Cons ci ratio: 1.281015e-01	ci left: 1.438145e-02	ci right 1.636583e-02	k: 921	n:60000
KS ci ratio: 2.473469e-02	ci left: 2.914190e-01	ci right 2.987341e-01	k: 17704	n:60000
METT10D   60000 perm   16 sec   (3755 perm/sec)   p_kst 2.950667e-01   p_cons 1.535000e-02   p_joint 5.016667e-02

Joint ci ratio: 5.323703e-02	ci left: 6.996877e-02	ci right 7.380967e-02	k: 5031	n:70000
Cons ci ratio: 1.192008e-01	ci left: 1.430665e-02	ci right 1.613386e-02	k: 1064	n:70000
KS ci ratio: 2.291312e-02	ci left: 2.914522e-01	ci right 2.982219e-01	k: 20638	n:70000
METT10D   70000 perm   19 sec   (3699 perm/sec)   p_kst 2.948286e-01   p_cons 1.520000e-02   p_joint 7.187143e-02

Joint ci ratio: 5.353959e-02	ci left: 6.111616e-02	ci right 6.449063e-02	k: 5023	n:80000
Cons ci ratio: 1.130274e-01	ci left: 1.397463e-02	ci right 1.566082e-02	k: 1184	n:80000
KS ci ratio: 2.145288e-02	ci left: 2.912928e-01	ci right 2.976221e-01	k: 23556	n:80000
METT10D   80000 perm   22 sec   (3632 perm/sec)   p_kst 2.944500e-01   p_cons 1.480000e-02   p_joint 6.278750e-02

Joint ci ratio: 6.274382e-02	ci left: 4.026095e-02	ci right 4.287981e-02	k: 3740	n:90000
Cons ci ratio: 9.942686e-02	ci left: 1.613297e-02	ci right 1.783171e-02	k: 1527	n:90000
KS ci ratio: 2.021820e-02	ci left: 2.916339e-01	ci right 2.976015e-01	k: 26515	n:90000
METT10D   90000 perm   25 sec   (3540 perm/sec)   p_kst 2.946111e-01   p_cons 1.696667e-02   p_joint 4.155556e-02

Outputting figure to mutsig2_images.part000000000104/METT10D.8_1725_90000_0.29461_0.016967_0.041556.png
                gene_name: METT10D
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.043 

Current progress: 18 percent done.
METTL13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.308081e-02	ci left: 5.742662e-01	ci right 5.936849e-01	k: 5840	n:10000
KS ci ratio: 1.244464e-02	ci left: 9.026794e-01	ci right 9.140814e-01	k: 9085	n:10000
METTL13   10000 perm   2 sec   (5246 perm/sec)   p_kst 9.085000e-01   p_cons 5.840000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/METTL13.8_2132_10000_0.9085_0.584_1.png
                gene_name: METTL13
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
METTL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.889743e-02	ci left: 4.939506e-01	ci right 5.136472e-01	k: 5038	n:10000
KS ci ratio: 1.445804e-02	ci left: 8.737768e-01	ci right 8.866008e-01	k: 8803	n:10000
METTL6   10000 perm   2 sec   (5468 perm/sec)   p_kst 8.803000e-01   p_cons 5.038000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/METTL6.8_875_10000_0.8803_0.5038_1.png
                gene_name: METTL6
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
MED24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.427922e-02	ci left: 8.764362e-01	ci right 8.891399e-01	k: 8829	n:10000
KS ci ratio: 2.004673e-02	ci left: 7.846201e-01	ci right 8.006090e-01	k: 7927	n:10000
MED24   10000 perm   2 sec   (4728 perm/sec)   p_kst 7.927000e-01   p_cons 8.829000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MED24.7_3070_10000_0.7927_0.8829_1.png
                gene_name: MED24
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
MEGF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.116972e-02	ci left: 6.029702e-01	ci right 6.221641e-01	k: 6126	n:10000
Cons ci ratio: 4.173737e-02	ci left: 4.587799e-01	ci right 4.784384e-01	k: 4686	n:10000
KS ci ratio: 5.738033e-02	ci left: 3.089757e-01	ci right 3.273303e-01	k: 3181	n:10000
MEGF10   10000 perm   3 sec   (3932 perm/sec)   p_kst 3.181000e-01   p_cons 4.686000e-01   p_joint 6.126000e-01

Outputting figure to mutsig2_images.part000000000104/MEGF10.7_3519_10000_0.3181_0.4686_0.6126.png
                gene_name: MEGF10
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 27 percent done.
MEI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.051746e-02	ci left: 1.838286e-01	ci right 1.993515e-01	k: 1915	n:10000
Cons ci ratio: 5.357377e-02	ci left: 3.392554e-01	ci right 3.580328e-01	k: 3486	n:10000
KS ci ratio: 1.025873e-01	ci left: 1.208265e-01	ci right 1.339914e-01	k: 1273	n:10000
MEI1   10000 perm   2 sec   (4480 perm/sec)   p_kst 1.273000e-01   p_cons 3.486000e-01   p_joint 1.915000e-01

Joint ci ratio: 5.787106e-02	ci left: 1.811721e-01	ci right 1.920192e-01	k: 3731	n:20000
Cons ci ratio: 3.815913e-02	ci left: 3.387581e-01	ci right 3.519868e-01	k: 6907	n:20000
KS ci ratio: 7.280364e-02	ci left: 1.219718e-01	ci right 1.312370e-01	k: 2531	n:20000
MEI1   20000 perm   5 sec   (4010 perm/sec)   p_kst 1.265500e-01   p_cons 3.453500e-01   p_joint 1.865500e-01

Outputting figure to mutsig2_images.part000000000104/MEI1.7_3949_20000_0.12655_0.34535_0.18655.png
                gene_name: MEI1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 29 percent done.
MED1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.977151e-02	ci left: 1.866835e-01	ci right 2.022949e-01	k: 1944	n:10000
Cons ci ratio: 9.739590e-02	ci left: 1.325692e-01	ci right 1.462416e-01	k: 1393	n:10000
KS ci ratio: 6.639033e-02	ci left: 2.498415e-01	ci right 2.670994e-01	k: 2584	n:10000
MED1   10000 perm   2 sec   (4421 perm/sec)   p_kst 2.584000e-01   p_cons 1.393000e-01   p_joint 1.944000e-01

Outputting figure to mutsig2_images.part000000000104/MED1.6_4814_10000_0.2584_0.1393_0.1944.png
                gene_name: MED1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 31 percent done.
MED14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.618281e-01	ci left: 9.503508e-03	ci right 1.378807e-02	k: 115	n:10000
Cons ci ratio: 2.595468e-01	ci left: 1.940213e-02	ci right 2.528070e-02	k: 222	n:10000
KS ci ratio: 1.741871e-01	ci left: 4.398826e-02	ci right 5.247740e-02	k: 481	n:10000
MED14   10000 perm   2 sec   (4178 perm/sec)   p_kst 4.810000e-02   p_cons 2.220000e-02   p_joint 1.150000e-02

Joint ci ratio: 2.098322e-01	ci left: 1.534872e-02	ci right 1.899360e-02	k: 342	n:20000
Cons ci ratio: 1.769473e-01	ci left: 2.182763e-02	ci right 2.611230e-02	k: 478	n:20000
KS ci ratio: 1.191975e-01	ci left: 4.823440e-02	ci right 5.439688e-02	k: 1025	n:20000
MED14   20000 perm   5 sec   (3785 perm/sec)   p_kst 5.125000e-02   p_cons 2.390000e-02   p_joint 1.710000e-02

Joint ci ratio: 2.251832e-01	ci left: 8.873598e-03	ci right 1.115613e-02	k: 299	n:30000
Cons ci ratio: 1.350064e-01	ci left: 2.548523e-02	ci right 2.920706e-02	k: 819	n:30000
KS ci ratio: 9.617773e-02	ci left: 4.993781e-02	ci right 5.501597e-02	k: 1573	n:30000
MED14   30000 perm   8 sec   (3754 perm/sec)   p_kst 5.243333e-02   p_cons 2.730000e-02   p_joint 9.966667e-03

Joint ci ratio: 2.528019e-01	ci left: 5.219877e-03	ci right 6.753176e-03	k: 238	n:40000
Cons ci ratio: 1.171583e-01	ci left: 2.562780e-02	ci right 2.884133e-02	k: 1088	n:40000
KS ci ratio: 8.299398e-02	ci left: 5.062845e-02	ci right 5.503675e-02	k: 2112	n:40000
MED14   40000 perm   11 sec   (3499 perm/sec)   p_kst 5.280000e-02   p_cons 2.720000e-02   p_joint 5.950000e-03

Joint ci ratio: 2.649139e-01	ci left: 3.782748e-03	ci right 4.955943e-03	k: 217	n:50000
Cons ci ratio: 1.050380e-01	ci left: 2.567477e-02	ci right 2.854049e-02	k: 1354	n:50000
KS ci ratio: 7.405848e-02	ci left: 5.109159e-02	ci right 5.504050e-02	k: 2652	n:50000
MED14   50000 perm   14 sec   (3506 perm/sec)   p_kst 5.304000e-02   p_cons 2.708000e-02   p_joint 4.340000e-03

Joint ci ratio: 1.504801e-01	ci left: 1.034124e-02	ci right 1.203987e-02	k: 670	n:60000
Cons ci ratio: 9.493042e-02	ci left: 2.632000e-02	ci right 2.895929e-02	k: 1657	n:60000
KS ci ratio: 6.784935e-02	ci left: 5.090913e-02	ci right 5.450096e-02	k: 3161	n:60000
MED14   60000 perm   17 sec   (3489 perm/sec)   p_kst 5.268333e-02   p_cons 2.761667e-02   p_joint 1.116667e-02

Joint ci ratio: 1.649851e-01	ci left: 7.339682e-03	ci right 8.673014e-03	k: 559	n:70000
Cons ci ratio: 8.761723e-02	ci left: 2.658061e-02	ci right 2.903017e-02	k: 1945	n:70000
KS ci ratio: 6.306943e-02	ci left: 5.064812e-02	ci right 5.396054e-02	k: 3660	n:70000
MED14   70000 perm   20 sec   (3458 perm/sec)   p_kst 5.228571e-02   p_cons 2.778571e-02   p_joint 7.985714e-03

Joint ci ratio: 1.314136e-01	ci left: 1.027667e-02	ci right 1.173412e-02	k: 879	n:80000
Cons ci ratio: 8.251350e-02	ci left: 2.630419e-02	ci right 2.858025e-02	k: 2194	n:80000
KS ci ratio: 5.885522e-02	ci left: 5.098914e-02	ci right 5.409341e-02	k: 4202	n:80000
MED14   80000 perm   24 sec   (3273 perm/sec)   p_kst 5.252500e-02   p_cons 2.742500e-02   p_joint 1.098750e-02

Joint ci ratio: 1.386761e-01	ci left: 8.189421e-03	ci right 9.420330e-03	k: 791	n:90000
Cons ci ratio: 7.773588e-02	ci left: 2.640858e-02	ci right 2.855535e-02	k: 2472	n:90000
KS ci ratio: 5.552258e-02	ci left: 5.101887e-02	ci right 5.394340e-02	k: 4722	n:90000
MED14   90000 perm   28 sec   (3186 perm/sec)   p_kst 5.246667e-02   p_cons 2.746667e-02   p_joint 8.788889e-03

Joint ci ratio: 1.190820e-01	ci left: 1.008125e-02	ci right 1.136737e-02	k: 1071	n:100000
Cons ci ratio: 7.389592e-02	ci left: 2.635765e-02	ci right 2.838988e-02	k: 2736	n:100000
KS ci ratio: 5.270931e-02	ci left: 5.102689e-02	ci right 5.379914e-02	k: 5240	n:100000
MED14   100000 perm   32 sec   (3133 perm/sec)   p_kst 5.240000e-02   p_cons 2.736000e-02   p_joint 1.071000e-02

Joint ci ratio: 1.179792e-01	ci left: 9.349807e-03	ci right 1.053079e-02	k: 1092	n:110000
Cons ci ratio: 7.040535e-02	ci left: 2.644323e-02	ci right 2.838180e-02	k: 3014	n:110000
KS ci ratio: 5.027524e-02	ci left: 5.105451e-02	ci right 5.369643e-02	k: 5760	n:110000
MED14   110000 perm   35 sec   (3122 perm/sec)   p_kst 5.236364e-02   p_cons 2.740000e-02   p_joint 9.927273e-03

Joint ci ratio: 1.077122e-01	ci left: 1.032831e-02	ci right 1.151217e-02	k: 1309	n:120000
Cons ci ratio: 6.736686e-02	ci left: 2.651642e-02	ci right 2.837318e-02	k: 3292	n:120000
KS ci ratio: 4.814996e-02	ci left: 5.107999e-02	ci right 5.360837e-02	k: 6280	n:120000
MED14   120000 perm   39 sec   (3093 perm/sec)   p_kst 5.233333e-02   p_cons 2.743333e-02   p_joint 1.090833e-02

Joint ci ratio: 1.044268e-01	ci left: 1.016279e-02	ci right 1.128996e-02	k: 1393	n:130000
Cons ci ratio: 6.487766e-02	ci left: 2.642846e-02	ci right 2.820810e-02	k: 3550	n:130000
KS ci ratio: 4.637408e-02	ci left: 5.089052e-02	ci right 5.331412e-02	k: 6772	n:130000
MED14   130000 perm   43 sec   (3018 perm/sec)   p_kst 5.209231e-02   p_cons 2.730769e-02   p_joint 1.071538e-02

Joint ci ratio: 9.937221e-02	ci left: 1.044628e-02	ci right 1.154554e-02	k: 1538	n:140000
Cons ci ratio: 6.241837e-02	ci left: 2.654407e-02	ci right 2.826129e-02	k: 3835	n:140000
KS ci ratio: 4.470012e-02	ci left: 5.090629e-02	ci right 5.324087e-02	k: 7289	n:140000
MED14   140000 perm   47 sec   (2971 perm/sec)   p_kst 5.206429e-02   p_cons 2.739286e-02   p_joint 1.098571e-02

Outputting figure to mutsig2_images.part000000000104/MED14.6_4489_140000_0.052064_0.027393_0.010986.png
                gene_name: MED14
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.012 

Current progress: 33 percent done.
MELK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.963710e-02	ci left: 2.926135e-01	ci right 3.107021e-01	k: 3016	n:10000
Cons ci ratio: 6.359997e-02	ci left: 2.664630e-01	ci right 2.840681e-01	k: 2752	n:10000
KS ci ratio: 5.596939e-02	ci left: 3.197920e-01	ci right 3.383077e-01	k: 3290	n:10000
MELK   10000 perm   2 sec   (4996 perm/sec)   p_kst 3.290000e-01   p_cons 2.752000e-01   p_joint 3.016000e-01

Outputting figure to mutsig2_images.part000000000104/MELK.6_2024_10000_0.329_0.2752_0.3016.png
                gene_name: MELK
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 35 percent done.
MEIS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.974146e-02	ci left: 7.896903e-01	ci right 8.055359e-01	k: 7977	n:10000
Cons ci ratio: 2.451118e-02	ci left: 7.099764e-01	ci right 7.276960e-01	k: 7189	n:10000
KS ci ratio: 2.374251e-02	ci left: 7.227983e-01	ci right 7.402667e-01	k: 7316	n:10000
MEIS1   10000 perm   2 sec   (5111 perm/sec)   p_kst 7.316000e-01   p_cons 7.189000e-01   p_joint 7.977000e-01

Outputting figure to mutsig2_images.part000000000104/MEIS1.5_1221_10000_0.7316_0.7189_0.7977.png
                gene_name: MEIS1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 37 percent done.
MEIS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.415671e-02	ci left: 3.343879e-01	ci right 3.531032e-01	k: 3437	n:10000
Cons ci ratio: 1.074258e-01	ci left: 1.111530e-01	ci right 1.238707e-01	k: 1174	n:10000
KS ci ratio: 5.749955e-02	ci left: 3.080829e-01	ci right 3.264237e-01	k: 3172	n:10000
MEIS2   10000 perm   2 sec   (5591 perm/sec)   p_kst 3.172000e-01   p_cons 1.174000e-01   p_joint 3.437000e-01

Joint ci ratio: 2.954186e-02	ci left: 4.612146e-01	ci right 4.750947e-01	k: 9363	n:20000
Cons ci ratio: 7.592629e-02	ci left: 1.131172e-01	ci right 1.220943e-01	k: 2351	n:20000
KS ci ratio: 4.200539e-02	ci left: 2.969332e-01	ci right 3.097240e-01	k: 6066	n:20000
MEIS2   20000 perm   4 sec   (4957 perm/sec)   p_kst 3.033000e-01   p_cons 1.175500e-01   p_joint 4.681500e-01

Outputting figure to mutsig2_images.part000000000104/MEIS2.5_1545_20000_0.3033_0.11755_0.46815.png
                gene_name: MEIS2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 39 percent done.
MEIS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.412556e-01	ci left: 6.642862e-02	ci right 7.662268e-02	k: 714	n:10000
Cons ci ratio: 4.017026e-02	ci left: 4.778579e-01	ci right 4.975492e-01	k: 4877	n:10000
KS ci ratio: 1.822799e-01	ci left: 4.015916e-02	ci right 4.830902e-02	k: 441	n:10000
MEIS3   10000 perm   2 sec   (6456 perm/sec)   p_kst 4.410000e-02   p_cons 4.877000e-01   p_joint 7.140000e-02

Joint ci ratio: 8.428246e-02	ci left: 9.347166e-02	ci right 1.017457e-01	k: 1951	n:20000
Cons ci ratio: 2.853791e-02	ci left: 4.784510e-01	ci right 4.923533e-01	k: 9708	n:20000
KS ci ratio: 1.270263e-01	ci left: 4.255610e-02	ci right 4.837698e-02	k: 908	n:20000
MEIS3   20000 perm   4 sec   (5703 perm/sec)   p_kst 4.540000e-02   p_cons 4.854000e-01   p_joint 9.755000e-02

Joint ci ratio: 8.000043e-02	ci left: 7.112796e-02	ci right 7.708817e-02	k: 2222	n:30000
Cons ci ratio: 2.344991e-02	ci left: 4.765643e-01	ci right 4.879058e-01	k: 14467	n:30000
KS ci ratio: 1.046657e-01	ci left: 4.232417e-02	ci right 4.703119e-02	k: 1339	n:30000
MEIS3   30000 perm   6 sec   (5437 perm/sec)   p_kst 4.463333e-02   p_cons 4.822333e-01   p_joint 7.406667e-02

Joint ci ratio: 7.644928e-02	ci left: 5.931234e-02	ci right 6.405153e-02	k: 2466	n:40000
Cons ci ratio: 1.997224e-02	ci left: 4.856643e-01	ci right 4.954871e-01	k: 19623	n:40000
KS ci ratio: 8.982217e-02	ci left: 4.340490e-02	ci right 4.751141e-02	k: 1817	n:40000
MEIS3   40000 perm   8 sec   (5245 perm/sec)   p_kst 4.542500e-02   p_cons 4.905750e-01   p_joint 6.165000e-02

Outputting figure to mutsig2_images.part000000000104/MEIS3.5_1314_40000_0.045425_0.49057_0.06165.png
                gene_name: MEIS3
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.064 

Current progress: 41 percent done.
MEPE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.395665e-02	ci left: 4.331321e-01	ci right 4.527012e-01	k: 4429	n:10000
Cons ci ratio: 6.048275e-02	ci left: 2.867661e-01	ci right 3.047530e-01	k: 2957	n:10000
KS ci ratio: 4.622758e-02	ci left: 4.085072e-01	ci right 4.279405e-01	k: 4182	n:10000
MEPE   10000 perm   2 sec   (5472 perm/sec)   p_kst 4.182000e-01   p_cons 2.957000e-01   p_joint 4.429000e-01

Outputting figure to mutsig2_images.part000000000104/MEPE.5_1590_10000_0.4182_0.2957_0.4429.png
                gene_name: MEPE
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 43 percent done.
MERTK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.577857e-03	ci left: 9.693152e-01	ci right 9.758056e-01	k: 9727	n:10000
Cons ci ratio: 9.590211e-03	ci left: 9.388977e-01	ci right 9.480418e-01	k: 9436	n:10000
KS ci ratio: 2.332572e-02	ci left: 7.297682e-01	ci right 7.470927e-01	k: 7385	n:10000
MERTK   10000 perm   2 sec   (4423 perm/sec)   p_kst 7.385000e-01   p_cons 9.436000e-01   p_joint 9.727000e-01

Outputting figure to mutsig2_images.part000000000104/MERTK.5_3076_10000_0.7385_0.9436_0.9727.png
                gene_name: MERTK
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 45 percent done.
MET
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.548479e-02	ci left: 2.550834e-01	ci right 2.724544e-01	k: 2637	n:10000
Cons ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
KS ci ratio: 7.019825e-02	ci left: 2.292855e-01	ci right 2.460676e-01	k: 2376	n:10000
MET   10000 perm   2 sec   (4115 perm/sec)   p_kst 2.376000e-01   p_cons 2.945000e-01   p_joint 2.637000e-01

Outputting figure to mutsig2_images.part000000000104/MET.5_4307_10000_0.2376_0.2945_0.2637.png
                gene_name: MET
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 47 percent done.
MEF2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.967064e-02	ci left: 3.741540e-01	ci right 3.933138e-01	k: 3837	n:10000
Cons ci ratio: 3.263356e-02	ci left: 5.808872e-01	ci right 6.002600e-01	k: 5906	n:10000
KS ci ratio: 5.987856e-02	ci left: 2.909285e-01	ci right 3.089882e-01	k: 2999	n:10000
MEF2A   10000 perm   2 sec   (5211 perm/sec)   p_kst 2.999000e-01   p_cons 5.906000e-01   p_joint 3.837000e-01

Outputting figure to mutsig2_images.part000000000104/MEF2A.4_1700_10000_0.2999_0.5906_0.3837.png
                gene_name: MEF2A
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 49 percent done.
MEGF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.972318e-02	ci left: 3.736565e-01	ci right 3.928116e-01	k: 3832	n:10000
Cons ci ratio: 1.650805e-02	ci left: 8.422384e-01	ci right 8.563575e-01	k: 8494	n:10000
KS ci ratio: 7.656007e-02	ci left: 1.996866e-01	ci right 2.156840e-01	k: 2076	n:10000
MEGF11   10000 perm   2 sec   (4542 perm/sec)   p_kst 2.076000e-01   p_cons 8.494000e-01   p_joint 3.832000e-01

Outputting figure to mutsig2_images.part000000000104/MEGF11.4_3223_10000_0.2076_0.8494_0.3832.png
                gene_name: MEGF11
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 51 percent done.
MEMO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.047660e-01	ci left: 1.163301e-01	ci right 1.292906e-01	k: 1227	n:10000
Cons ci ratio: 4.607595e-02	ci left: 4.101016e-01	ci right 4.295451e-01	k: 4198	n:10000
KS ci ratio: 1.269826e-01	ci left: 8.144990e-02	ci right 9.259206e-02	k: 869	n:10000
MEMO1   10000 perm   2 sec   (5574 perm/sec)   p_kst 8.690000e-02   p_cons 4.198000e-01   p_joint 1.227000e-01

Joint ci ratio: 6.345127e-02	ci left: 1.551413e-01	ci right 1.653577e-01	k: 3204	n:20000
Cons ci ratio: 3.147510e-02	ci left: 4.298608e-01	ci right 4.436576e-01	k: 8735	n:20000
KS ci ratio: 8.567560e-02	ci left: 9.067620e-02	ci right 9.884206e-02	k: 1894	n:20000
MEMO1   20000 perm   4 sec   (4787 perm/sec)   p_kst 9.470000e-02   p_cons 4.367500e-01   p_joint 1.602000e-01

Outputting figure to mutsig2_images.part000000000104/MEMO1.4_930_20000_0.0947_0.43675_0.1602.png
                gene_name: MEMO1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 53 percent done.
MEP1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.593439e-02	ci left: 4.115964e-01	ci right 4.310494e-01	k: 4213	n:10000
Cons ci ratio: 3.389760e-02	ci left: 5.623328e-01	ci right 5.818252e-01	k: 5721	n:10000
KS ci ratio: 5.580505e-02	ci left: 3.210824e-01	ci right 3.396165e-01	k: 3303	n:10000
MEP1B   10000 perm   2 sec   (5130 perm/sec)   p_kst 3.303000e-01   p_cons 5.721000e-01   p_joint 4.213000e-01

Outputting figure to mutsig2_images.part000000000104/MEP1B.4_2166_10000_0.3303_0.5721_0.4213.png
                gene_name: MEP1B
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 55 percent done.
MESDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.284356e-02	ci left: 2.712149e-01	ci right 2.889134e-01	k: 2800	n:10000
Cons ci ratio: 4.137052e-02	ci left: 4.631735e-01	ci right 4.828422e-01	k: 4730	n:10000
KS ci ratio: 8.088317e-02	ci left: 1.824506e-01	ci right 1.979303e-01	k: 1901	n:10000
MESDC2   10000 perm   2 sec   (5997 perm/sec)   p_kst 1.901000e-01   p_cons 4.730000e-01   p_joint 2.800000e-01

Outputting figure to mutsig2_images.part000000000104/MESDC2.4_717_10000_0.1901_0.473_0.28.png
                gene_name: MESDC2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 57 percent done.
METTL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.040012e-02	ci left: 6.148232e-01	ci right 6.339043e-01	k: 6244	n:10000
KS ci ratio: 2.703135e-02	ci left: 6.684392e-01	ci right 6.868572e-01	k: 6777	n:10000
METTL3   10000 perm   2 sec   (5165 perm/sec)   p_kst 6.777000e-01   p_cons 6.244000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/METTL3.4_1787_10000_0.6777_0.6244_1.png
                gene_name: METTL3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
MEAF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.743116e-02	ci left: 5.131551e-01	ci right 5.328315e-01	k: 5230	n:10000
KS ci ratio: 8.799894e-03	ci left: 9.477308e-01	ci right 9.562034e-01	k: 9521	n:10000
MEAF6   10000 perm   1 sec   (6979 perm/sec)   p_kst 9.521000e-01   p_cons 5.230000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MEAF6.3_638_10000_0.9521_0.523_1.png
                gene_name: MEAF6
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
MED8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.155999e-02	ci left: 3.567477e-01	ci right 3.757303e-01	k: 3662	n:10000
Cons ci ratio: 3.254592e-02	ci left: 5.821915e-01	ci right 6.015549e-01	k: 5919	n:10000
KS ci ratio: 7.223301e-02	ci left: 2.192151e-01	ci right 2.357440e-01	k: 2274	n:10000
MED8   10000 perm   2 sec   (6023 perm/sec)   p_kst 2.274000e-01   p_cons 5.919000e-01   p_joint 3.662000e-01

Outputting figure to mutsig2_images.part000000000104/MED8.3_942_10000_0.2274_0.5919_0.3662.png
                gene_name: MED8
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 63 percent done.
MEPCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.016804e-01	ci left: 3.271977e-02	ci right 4.015343e-02	k: 363	n:10000
Cons ci ratio: 1.125939e-01	ci left: 1.019814e-01	ci right 1.142479e-01	k: 1080	n:10000
KS ci ratio: 3.415481e-01	ci left: 1.078106e-02	ci right 1.530921e-02	k: 129	n:10000
MEPCE   10000 perm   2 sec   (4715 perm/sec)   p_kst 1.290000e-02   p_cons 1.080000e-01   p_joint 3.630000e-02

Joint ci ratio: 2.047293e-01	ci left: 1.615527e-02	ci right 1.988674e-02	k: 359	n:20000
Cons ci ratio: 7.939116e-02	ci left: 1.043201e-01	ci right 1.129941e-01	k: 2172	n:20000
KS ci ratio: 2.468626e-01	ci left: 1.091252e-02	ci right 1.403162e-02	k: 248	n:20000
MEPCE   20000 perm   5 sec   (4222 perm/sec)   p_kst 1.240000e-02   p_cons 1.086000e-01   p_joint 1.795000e-02

Joint ci ratio: 1.821674e-01	ci left: 1.381413e-02	ci right 1.661424e-02	k: 455	n:30000
Cons ci ratio: 6.734808e-02	ci left: 9.803910e-02	ci right 1.049050e-01	k: 3043	n:30000
KS ci ratio: 2.047805e-01	ci left: 1.083028e-02	ci right 1.333222e-02	k: 361	n:30000
MEPCE   30000 perm   8 sec   (3981 perm/sec)   p_kst 1.203333e-02   p_cons 1.014333e-01   p_joint 1.516667e-02

Joint ci ratio: 1.442580e-01	ci left: 1.681613e-02	ci right 1.945449e-02	k: 724	n:40000
Cons ci ratio: 5.836269e-02	ci left: 9.838433e-02	ci right 1.043237e-01	k: 4053	n:40000
KS ci ratio: 1.750952e-01	ci left: 1.129070e-02	ci right 1.348094e-02	k: 494	n:40000
MEPCE   40000 perm   10 sec   (3912 perm/sec)   p_kst 1.235000e-02   p_cons 1.013250e-01   p_joint 1.810000e-02

Joint ci ratio: 1.132029e-01	ci left: 2.209268e-02	ci right 2.476304e-02	k: 1170	n:50000
Cons ci ratio: 5.197048e-02	ci left: 9.949876e-02	ci right 1.048275e-01	k: 5107	n:50000
KS ci ratio: 1.564503e-01	ci left: 1.142918e-02	ci right 1.338804e-02	k: 619	n:50000
MEPCE   50000 perm   13 sec   (3810 perm/sec)   p_kst 1.238000e-02   p_cons 1.021400e-01   p_joint 2.340000e-02

Joint ci ratio: 1.253014e-01	ci left: 1.504344e-02	ci right 1.707043e-02	k: 962	n:60000
Cons ci ratio: 4.736756e-02	ci left: 1.000181e-01	ci right 1.048871e-01	k: 6146	n:60000
KS ci ratio: 1.434059e-01	ci left: 1.141730e-02	ci right 1.319700e-02	k: 737	n:60000
MEPCE   60000 perm   16 sec   (3807 perm/sec)   p_kst 1.228333e-02   p_cons 1.024333e-01   p_joint 1.603333e-02

Joint ci ratio: 1.165083e-01	ci left: 1.498631e-02	ci right 1.685413e-02	k: 1113	n:70000
Cons ci ratio: 4.378080e-02	ci left: 1.005030e-01	ci right 1.050157e-01	k: 7192	n:70000
KS ci ratio: 1.341956e-01	ci left: 1.123414e-02	ci right 1.286383e-02	k: 842	n:70000
MEPCE   70000 perm   18 sec   (3797 perm/sec)   p_kst 1.202857e-02   p_cons 1.027429e-01   p_joint 1.590000e-02

Joint ci ratio: 9.643184e-02	ci left: 1.926072e-02	ci right 2.122429e-02	k: 1618	n:80000
Cons ci ratio: 4.095480e-02	ci left: 1.006418e-01	ci right 1.048621e-01	k: 8219	n:80000
KS ci ratio: 1.263561e-01	ci left: 1.113586e-02	ci right 1.264985e-02	k: 950	n:80000
MEPCE   80000 perm   21 sec   (3734 perm/sec)   p_kst 1.187500e-02   p_cons 1.027375e-01   p_joint 2.022500e-02

Joint ci ratio: 1.058851e-01	ci left: 1.420516e-02	ci right 1.580410e-02	k: 1349	n:90000
Cons ci ratio: 3.857191e-02	ci left: 1.009553e-01	ci right 1.049370e-01	k: 9264	n:90000
KS ci ratio: 1.194054e-01	ci left: 1.112629e-02	ci right 1.254988e-02	k: 1064	n:90000
MEPCE   90000 perm   24 sec   (3700 perm/sec)   p_kst 1.182222e-02   p_cons 1.029333e-01   p_joint 1.498889e-02

Joint ci ratio: 1.097791e-01	ci left: 1.189839e-02	ci right 1.329010e-02	k: 1258	n:100000
Cons ci ratio: 3.660334e-02	ci left: 1.010036e-01	ci right 1.047795e-01	k: 10288	n:100000
KS ci ratio: 1.132457e-01	ci left: 1.116906e-02	ci right 1.251947e-02	k: 1183	n:100000
MEPCE   100000 perm   27 sec   (3666 perm/sec)   p_kst 1.183000e-02   p_cons 1.028800e-01   p_joint 1.258000e-02

Joint ci ratio: 1.213906e-01	ci left: 8.820534e-03	ci right 9.969192e-03	k: 1032	n:110000
Cons ci ratio: 3.372416e-02	ci left: 1.075431e-01	ci right 1.112411e-01	k: 12032	n:110000
KS ci ratio: 1.081185e-01	ci left: 1.117021e-02	ci right 1.245572e-02	k: 1298	n:110000
MEPCE   110000 perm   30 sec   (3628 perm/sec)   p_kst 1.180000e-02   p_cons 1.093818e-01   p_joint 9.381818e-03

Joint ci ratio: 1.085107e-01	ci left: 1.017421e-02	ci right 1.134961e-02	k: 1290	n:120000
Cons ci ratio: 3.223045e-02	ci left: 1.079702e-01	ci right 1.115154e-01	k: 13168	n:120000
KS ci ratio: 1.032612e-01	ci left: 1.125352e-02	ci right 1.248690e-02	k: 1423	n:120000
MEPCE   120000 perm   33 sec   (3587 perm/sec)   p_kst 1.185833e-02   p_cons 1.097333e-01   p_joint 1.075000e-02

Joint ci ratio: 1.081339e-01	ci left: 9.466234e-03	ci right 1.055579e-02	k: 1300	n:130000
Cons ci ratio: 3.093001e-02	ci left: 1.082658e-01	ci right 1.116747e-01	k: 14295	n:130000
KS ci ratio: 9.975694e-02	ci left: 1.115254e-02	ci right 1.233093e-02	k: 1525	n:130000
MEPCE   130000 perm   37 sec   (3548 perm/sec)   p_kst 1.173077e-02   p_cons 1.099615e-01   p_joint 1.000000e-02

Joint ci ratio: 9.640714e-02	ci left: 1.110842e-02	ci right 1.224051e-02	k: 1633	n:140000
Cons ci ratio: 2.978610e-02	ci left: 1.084507e-01	ci right 1.117369e-01	k: 15412	n:140000
KS ci ratio: 9.602140e-02	ci left: 1.119907e-02	ci right 1.233557e-02	k: 1646	n:140000
MEPCE   140000 perm   40 sec   (3505 perm/sec)   p_kst 1.175714e-02   p_cons 1.100857e-01   p_joint 1.166429e-02

Outputting figure to mutsig2_images.part000000000104/MEPCE.3_2086_140000_0.011757_0.11009_0.011664.png
                gene_name: MEPCE
               theta_stop: 0.096 
                    nperm: 140000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 65 percent done.
MEST
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.852670e-03	ci left: 9.575422e-01	ci right 9.651860e-01	k: 9615	n:10000
Cons ci ratio: 1.772336e-02	ci left: 8.227970e-01	ci right 8.376101e-01	k: 8303	n:10000
KS ci ratio: 1.481906e-02	ci left: 8.683587e-01	ci right 8.814221e-01	k: 8750	n:10000
MEST   10000 perm   2 sec   (6368 perm/sec)   p_kst 8.750000e-01   p_cons 8.303000e-01   p_joint 9.615000e-01

Outputting figure to mutsig2_images.part000000000104/MEST.3_1056_10000_0.875_0.8303_0.9615.png
                gene_name: MEST
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 67 percent done.
METTL14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.921903e-02	ci left: 6.333178e-01	ci right 6.521989e-01	k: 6428	n:10000
KS ci ratio: 1.767305e-02	ci left: 8.236106e-01	ci right 8.383961e-01	k: 8311	n:10000
METTL14   10000 perm   2 sec   (5021 perm/sec)   p_kst 8.311000e-01   p_cons 6.428000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/METTL14.3_1415_10000_0.8311_0.6428_1.png
                gene_name: METTL14
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
METTL7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.639033e-02	ci left: 2.498415e-01	ci right 2.670994e-01	k: 2584	n:10000
Cons ci ratio: 2.775184e-02	ci left: 6.567594e-01	ci right 6.753438e-01	k: 6661	n:10000
KS ci ratio: 1.329282e-01	ci left: 7.465870e-02	ci right 8.538747e-02	k: 799	n:10000
METTL7A   10000 perm   2 sec   (5250 perm/sec)   p_kst 7.990000e-02   p_cons 6.661000e-01   p_joint 2.584000e-01

Joint ci ratio: 6.404719e-02	ci left: 1.526740e-01	ci right 1.628258e-01	k: 3154	n:20000
Cons ci ratio: 1.995384e-02	ci left: 6.520309e-01	ci right 6.652230e-01	k: 13173	n:20000
KS ci ratio: 9.668205e-02	ci left: 7.226644e-02	ci right 7.965740e-02	k: 1518	n:20000
METTL7A   20000 perm   4 sec   (4637 perm/sec)   p_kst 7.590000e-02   p_cons 6.586500e-01   p_joint 1.577000e-01

Outputting figure to mutsig2_images.part000000000104/METTL7A.3_743_20000_0.0759_0.65865_0.1577.png
                gene_name: METTL7A
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 71 percent done.
METTL8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.751436e-01	ci left: 4.350916e-02	ci right 5.195681e-02	k: 476	n:10000
Cons ci ratio: 5.704172e-01	ci left: 3.369688e-03	ci right 6.131041e-03	k: 46	n:10000
KS ci ratio: 6.245627e-02	ci left: 2.736903e-01	ci right 2.914365e-01	k: 2825	n:10000
METTL8   10000 perm   2 sec   (5440 perm/sec)   p_kst 2.825000e-01   p_cons 4.600000e-03   p_joint 4.760000e-02

Joint ci ratio: 1.648311e-01	ci left: 2.522947e-02	ci right 2.980929e-02	k: 549	n:20000
Cons ci ratio: 4.458536e-01	ci left: 2.995101e-03	ci right 4.753991e-03	k: 76	n:20000
KS ci ratio: 4.337098e-02	ci left: 2.836675e-01	ci right 2.962936e-01	k: 5799	n:20000
METTL8   20000 perm   4 sec   (4882 perm/sec)   p_kst 2.899500e-01   p_cons 3.800000e-03   p_joint 2.745000e-02

Joint ci ratio: 1.510126e-01	ci left: 2.030570e-02	ci right 2.365443e-02	k: 658	n:30000
Cons ci ratio: 3.571231e-01	ci left: 3.287119e-03	ci right 4.744855e-03	k: 119	n:30000
KS ci ratio: 3.527237e-02	ci left: 2.864607e-01	ci right 2.967797e-01	k: 8748	n:30000
METTL8   30000 perm   6 sec   (4812 perm/sec)   p_kst 2.916000e-01   p_cons 3.966667e-03   p_joint 2.193333e-02

Joint ci ratio: 1.004150e-01	ci left: 3.485420e-02	ci right 3.856345e-02	k: 1467	n:40000
Cons ci ratio: 3.132347e-01	ci left: 3.289902e-03	ci right 4.533824e-03	k: 155	n:40000
KS ci ratio: 3.062893e-02	ci left: 2.860538e-01	ci right 2.949766e-01	k: 11620	n:40000
METTL8   40000 perm   8 sec   (4716 perm/sec)   p_kst 2.905000e-01   p_cons 3.875000e-03   p_joint 3.667500e-02

Joint ci ratio: 1.095685e-01	ci left: 2.359076e-02	ci right 2.634476e-02	k: 1247	n:50000
Cons ci ratio: 2.861194e-01	ci left: 3.205375e-03	ci right 4.293492e-03	k: 186	n:50000
KS ci ratio: 2.749839e-02	ci left: 2.849892e-01	ci right 2.929553e-01	k: 14448	n:50000
METTL8   50000 perm   11 sec   (4642 perm/sec)   p_kst 2.889600e-01   p_cons 3.720000e-03   p_joint 2.494000e-02

Joint ci ratio: 1.106656e-01	ci left: 1.934864e-02	ci right 2.163141e-02	k: 1228	n:60000
Cons ci ratio: 2.644030e-01	ci left: 3.167712e-03	ci right 4.147930e-03	k: 218	n:60000
KS ci ratio: 2.512776e-02	ci left: 2.849266e-01	ci right 2.921939e-01	k: 17313	n:60000
METTL8   60000 perm   13 sec   (4562 perm/sec)   p_kst 2.885500e-01   p_cons 3.633333e-03   p_joint 2.046667e-02

Joint ci ratio: 1.096116e-01	ci left: 1.695847e-02	ci right 1.893892e-02	k: 1255	n:70000
Cons ci ratio: 2.505128e-01	ci left: 3.049267e-03	ci right 3.935534e-03	k: 243	n:70000
KS ci ratio: 2.335613e-02	ci left: 2.835795e-01	ci right 2.902953e-01	k: 20085	n:70000
METTL8   70000 perm   16 sec   (4479 perm/sec)   p_kst 2.869286e-01   p_cons 3.471429e-03   p_joint 1.792857e-02

Joint ci ratio: 8.809910e-02	ci left: 2.308502e-02	ci right 2.522468e-02	k: 1931	n:80000
Cons ci ratio: 2.334351e-01	ci left: 3.102607e-03	ci right 3.934039e-03	k: 280	n:80000
KS ci ratio: 2.196263e-02	ci left: 2.816617e-01	ci right 2.879289e-01	k: 22783	n:80000
METTL8   80000 perm   18 sec   (4392 perm/sec)   p_kst 2.847875e-01   p_cons 3.500000e-03   p_joint 2.413750e-02

Joint ci ratio: 9.425606e-02	ci left: 1.796607e-02	ci right 1.975403e-02	k: 1696	n:90000
Cons ci ratio: 2.180607e-01	ci left: 3.187709e-03	ci right 3.978153e-03	k: 321	n:90000
KS ci ratio: 2.067273e-02	ci left: 2.825063e-01	ci right 2.884186e-01	k: 25691	n:90000
METTL8   90000 perm   21 sec   (4314 perm/sec)   p_kst 2.854556e-01   p_cons 3.566667e-03   p_joint 1.884444e-02

Joint ci ratio: 9.247934e-02	ci left: 1.683312e-02	ci right 1.847503e-02	k: 1764	n:100000
Cons ci ratio: 2.094653e-01	ci left: 3.124476e-03	ci right 3.864783e-03	k: 348	n:100000
KS ci ratio: 1.958531e-02	ci left: 2.832104e-01	ci right 2.888220e-01	k: 28601	n:100000
METTL8   100000 perm   24 sec   (4238 perm/sec)   p_kst 2.860100e-01   p_cons 3.480000e-03   p_joint 1.764000e-02

Joint ci ratio: 9.109705e-02	ci left: 1.579985e-02	ci right 1.731670e-02	k: 1820	n:110000
Cons ci ratio: 1.996913e-01	ci left: 3.142325e-03	ci right 3.847889e-03	k: 383	n:110000
KS ci ratio: 1.866688e-02	ci left: 2.834939e-01	ci right 2.888447e-01	k: 31478	n:110000
METTL8   110000 perm   26 sec   (4165 perm/sec)   p_kst 2.861636e-01   p_cons 3.481818e-03   p_joint 1.654545e-02

Joint ci ratio: 8.547540e-02	ci left: 1.648821e-02	ci right 1.796858e-02	k: 2066	n:120000
Cons ci ratio: 1.907129e-01	ci left: 3.173740e-03	ci right 3.850604e-03	k: 420	n:120000
KS ci ratio: 1.785460e-02	ci left: 2.840094e-01	ci right 2.891342e-01	k: 34388	n:120000
METTL8   120000 perm   29 sec   (4092 perm/sec)   p_kst 2.865667e-01   p_cons 3.500000e-03   p_joint 1.721667e-02

Joint ci ratio: 8.462238e-02	ci left: 1.555083e-02	ci right 1.693241e-02	k: 2110	n:130000
Cons ci ratio: 1.838558e-01	ci left: 3.164220e-03	ci right 3.812086e-03	k: 452	n:130000
KS ci ratio: 1.716892e-02	ci left: 2.837593e-01	ci right 2.886810e-01	k: 37208	n:130000
METTL8   130000 perm   32 sec   (4023 perm/sec)   p_kst 2.862154e-01   p_cons 3.476923e-03   p_joint 1.623077e-02

Joint ci ratio: 8.572985e-02	ci left: 1.408307e-02	ci right 1.535143e-02	k: 2059	n:140000
Cons ci ratio: 1.778729e-01	ci left: 3.149607e-03	ci right 3.771238e-03	k: 483	n:140000
KS ci ratio: 1.654590e-02	ci left: 2.838119e-01	ci right 2.885541e-01	k: 40065	n:140000
METTL8   140000 perm   35 sec   (3956 perm/sec)   p_kst 2.861786e-01   p_cons 3.450000e-03   p_joint 1.470714e-02

Joint ci ratio: 8.363705e-02	ci left: 1.382930e-02	ci right 1.504291e-02	k: 2164	n:150000
Cons ci ratio: 1.726067e-01	ci left: 3.130859e-03	ci right 3.728589e-03	k: 513	n:150000
KS ci ratio: 1.597101e-02	ci left: 2.842460e-01	ci right 2.888289e-01	k: 42980	n:150000
METTL8   150000 perm   39 sec   (3879 perm/sec)   p_kst 2.865333e-01   p_cons 3.420000e-03   p_joint 1.442667e-02

Joint ci ratio: 8.913438e-02	ci left: 1.141108e-02	ci right 1.248172e-02	k: 1910	n:160000
Cons ci ratio: 1.676276e-01	ci left: 3.120681e-03	ci right 3.697545e-03	k: 544	n:160000
KS ci ratio: 1.546467e-02	ci left: 2.842979e-01	ci right 2.887349e-01	k: 45842	n:160000
METTL8   160000 perm   42 sec   (3818 perm/sec)   p_kst 2.865125e-01   p_cons 3.400000e-03   p_joint 1.193750e-02

Joint ci ratio: 9.167321e-02	ci left: 1.015310e-02	ci right 1.113429e-02	k: 1808	n:170000
Cons ci ratio: 1.623504e-01	ci left: 3.140136e-03	ci right 3.700539e-03	k: 580	n:170000
KS ci ratio: 1.501528e-02	ci left: 2.840287e-01	ci right 2.883315e-01	k: 48650	n:170000
METTL8   170000 perm   45 sec   (3757 perm/sec)   p_kst 2.861765e-01   p_cons 3.411765e-03   p_joint 1.063529e-02

Joint ci ratio: 8.917067e-02	ci left: 1.014832e-02	ci right 1.110088e-02	k: 1911	n:180000
Cons ci ratio: 1.589704e-01	ci left: 3.098983e-03	ci right 3.639429e-03	k: 605	n:180000
KS ci ratio: 1.459418e-02	ci left: 2.840351e-01	ci right 2.882163e-01	k: 51502	n:180000
METTL8   180000 perm   49 sec   (3698 perm/sec)   p_kst 2.861222e-01   p_cons 3.361111e-03   p_joint 1.061667e-02

Joint ci ratio: 9.461936e-02	ci left: 8.528826e-03	ci right 9.380994e-03	k: 1700	n:190000
Cons ci ratio: 1.548114e-01	ci left: 3.102745e-03	ci right 3.628377e-03	k: 638	n:190000
KS ci ratio: 1.421323e-02	ci left: 2.838532e-01	ci right 2.879218e-01	k: 54318	n:190000
METTL8   190000 perm   52 sec   (3640 perm/sec)   p_kst 2.858842e-01   p_cons 3.357895e-03   p_joint 8.947368e-03

Joint ci ratio: 7.539775e-02	ci left: 1.283195e-02	ci right 1.384223e-02	k: 2666	n:200000
Cons ci ratio: 1.499584e-01	ci left: 3.149608e-03	ci right 3.664951e-03	k: 680	n:200000
KS ci ratio: 1.384230e-02	ci left: 2.842297e-01	ci right 2.881965e-01	k: 57242	n:200000
METTL8   200000 perm   56 sec   (3584 perm/sec)   p_kst 2.862100e-01   p_cons 3.400000e-03   p_joint 1.333000e-02

Joint ci ratio: 7.159036e-02	ci left: 1.357200e-02	ci right 1.458434e-02	k: 2955	n:210000
Cons ci ratio: 1.461446e-01	ci left: 3.164707e-03	ci right 3.668202e-03	k: 716	n:210000
KS ci ratio: 1.350086e-02	ci left: 2.845146e-01	ci right 2.883866e-01	k: 60154	n:210000
METTL8   210000 perm   59 sec   (3530 perm/sec)   p_kst 2.864476e-01   p_cons 3.409524e-03   p_joint 1.407143e-02

Joint ci ratio: 7.171201e-02	ci left: 1.291922e-02	ci right 1.388457e-02	k: 2947	n:220000
Cons ci ratio: 1.425128e-01	ci left: 3.182967e-03	ci right 3.675714e-03	k: 753	n:220000
KS ci ratio: 1.318877e-02	ci left: 2.846113e-01	ci right 2.883944e-01	k: 63030	n:220000
METTL8   220000 perm   63 sec   (3477 perm/sec)   p_kst 2.865000e-01   p_cons 3.422727e-03   p_joint 1.339545e-02

Joint ci ratio: 7.084981e-02	ci left: 1.266919e-02	ci right 1.360401e-02	k: 3020	n:230000
Cons ci ratio: 1.399401e-01	ci left: 3.162013e-03	ci right 3.641941e-03	k: 781	n:230000
KS ci ratio: 1.289861e-02	ci left: 2.846615e-01	ci right 2.883613e-01	k: 65897	n:230000
METTL8   230000 perm   67 sec   (3419 perm/sec)   p_kst 2.865087e-01   p_cons 3.395652e-03   p_joint 1.313043e-02

Joint ci ratio: 6.761190e-02	ci left: 1.334526e-02	ci right 1.428320e-02	k: 3314	n:240000
Cons ci ratio: 1.373318e-01	ci left: 3.150925e-03	ci right 3.619528e-03	k: 811	n:240000
KS ci ratio: 1.262949e-02	ci left: 2.846210e-01	ci right 2.882425e-01	k: 68743	n:240000
METTL8   240000 perm   72 sec   (3326 perm/sec)   p_kst 2.864292e-01   p_cons 3.379167e-03   p_joint 1.380833e-02

Joint ci ratio: 6.612099e-02	ci left: 1.340536e-02	ci right 1.432596e-02	k: 3465	n:250000
Cons ci ratio: 1.345439e-01	ci left: 3.156264e-03	ci right 3.615369e-03	k: 845	n:250000
KS ci ratio: 1.237715e-02	ci left: 2.845645e-01	ci right 2.881125e-01	k: 71584	n:250000
METTL8   250000 perm   77 sec   (3260 perm/sec)   p_kst 2.863360e-01   p_cons 3.380000e-03   p_joint 1.386000e-02

Joint ci ratio: 6.622607e-02	ci left: 1.285561e-02	ci right 1.373990e-02	k: 3456	n:260000
Cons ci ratio: 1.319944e-01	ci left: 3.157561e-03	ci right 3.607468e-03	k: 878	n:260000
KS ci ratio: 1.213227e-02	ci left: 2.847511e-01	ci right 2.882306e-01	k: 74487	n:260000
METTL8   260000 perm   81 sec   (3207 perm/sec)   p_kst 2.864885e-01   p_cons 3.376923e-03   p_joint 1.329231e-02

Joint ci ratio: 6.539509e-02	ci left: 1.270365e-02	ci right 1.356611e-02	k: 3545	n:270000
Cons ci ratio: 1.297273e-01	ci left: 3.151669e-03	ci right 3.592431e-03	k: 909	n:270000
KS ci ratio: 1.190892e-02	ci left: 2.846657e-01	ci right 2.880797e-01	k: 77320	n:270000
METTL8   270000 perm   86 sec   (3156 perm/sec)   p_kst 2.863704e-01   p_cons 3.366667e-03   p_joint 1.312963e-02

Joint ci ratio: 6.719908e-02	ci left: 1.160347e-02	ci right 1.241382e-02	k: 3361	n:280000
Cons ci ratio: 1.275732e-01	ci left: 3.146260e-03	ci right 3.578406e-03	k: 940	n:280000
KS ci ratio: 1.168675e-02	ci left: 2.849612e-01	ci right 2.883146e-01	k: 80258	n:280000
METTL8   280000 perm   90 sec   (3102 perm/sec)   p_kst 2.866357e-01   p_cons 3.357143e-03   p_joint 1.200357e-02

Joint ci ratio: 6.331635e-02	ci left: 1.263161e-02	ci right 1.346092e-02	k: 3782	n:290000
Cons ci ratio: 1.244990e-01	ci left: 3.194733e-03	ci right 3.622183e-03	k: 987	n:290000
KS ci ratio: 1.148188e-02	ci left: 2.850476e-01	ci right 2.883428e-01	k: 83141	n:290000
METTL8   290000 perm   95 sec   (3050 perm/sec)   p_kst 2.866931e-01   p_cons 3.403448e-03   p_joint 1.304138e-02

Joint ci ratio: 5.242871e-02	ci left: 1.781349e-02	ci right 1.877584e-02	k: 5487	n:300000
Cons ci ratio: 1.227727e-01	ci left: 3.178687e-03	ci right 3.597664e-03	k: 1015	n:300000
KS ci ratio: 1.129736e-02	ci left: 2.847694e-01	ci right 2.880081e-01	k: 85916	n:300000
METTL8   300000 perm   100 sec   (2998 perm/sec)   p_kst 2.863867e-01   p_cons 3.383333e-03   p_joint 1.829000e-02

Joint ci ratio: 5.251270e-02	ci left: 1.719415e-02	ci right 1.812457e-02	k: 5473	n:310000
Cons ci ratio: 1.211163e-01	ci left: 3.163714e-03	ci right 3.574688e-03	k: 1043	n:310000
KS ci ratio: 1.110706e-02	ci left: 2.850376e-01	ci right 2.882244e-01	k: 88855	n:310000
METTL8   310000 perm   106 sec   (2937 perm/sec)   p_kst 2.866290e-01   p_cons 3.364516e-03   p_joint 1.765484e-02

Joint ci ratio: 5.006224e-02	ci left: 1.832914e-02	ci right 1.927336e-02	k: 6015	n:320000
Cons ci ratio: 1.191909e-01	ci left: 3.167905e-03	ci right 3.572421e-03	k: 1077	n:320000
KS ci ratio: 1.092941e-02	ci left: 2.851647e-01	ci right 2.883016e-01	k: 91754	n:320000
METTL8   320000 perm   111 sec   (2890 perm/sec)   p_kst 2.867312e-01   p_cons 3.365625e-03   p_joint 1.879688e-02

Joint ci ratio: 4.941165e-02	ci left: 1.825251e-02	ci right 1.918021e-02	k: 6175	n:330000
Cons ci ratio: 1.171434e-01	ci left: 3.183658e-03	ci right 3.582718e-03	k: 1115	n:330000
KS ci ratio: 1.076233e-02	ci left: 2.851968e-01	ci right 2.882858e-01	k: 94624	n:330000
METTL8   330000 perm   117 sec   (2828 perm/sec)   p_kst 2.867394e-01   p_cons 3.378788e-03   p_joint 1.871212e-02

Joint ci ratio: 4.940921e-02	ci left: 1.772717e-02	ci right 1.862813e-02	k: 6179	n:340000
Cons ci ratio: 1.155500e-01	ci left: 3.178543e-03	ci right 3.571173e-03	k: 1146	n:340000
KS ci ratio: 1.060489e-02	ci left: 2.851421e-01	ci right 2.881850e-01	k: 97465	n:340000
METTL8   340000 perm   123 sec   (2774 perm/sec)   p_kst 2.866618e-01   p_cons 3.370588e-03   p_joint 1.817353e-02

Joint ci ratio: 4.881862e-02	ci left: 1.764679e-02	ci right 1.853264e-02	k: 6330	n:350000
Cons ci ratio: 1.146071e-01	ci left: 3.140447e-03	ci right 3.524991e-03	k: 1165	n:350000
KS ci ratio: 1.045066e-02	ci left: 2.852278e-01	ci right 2.882271e-01	k: 100354	n:350000
METTL8   350000 perm   128 sec   (2744 perm/sec)   p_kst 2.867257e-01   p_cons 3.328571e-03   p_joint 1.808571e-02

Joint ci ratio: 4.906036e-02	ci left: 1.699732e-02	ci right 1.785491e-02	k: 6272	n:360000
Cons ci ratio: 1.131137e-01	ci left: 3.136871e-03	ci right 3.515638e-03	k: 1196	n:360000
KS ci ratio: 1.030633e-02	ci left: 2.851760e-01	ci right 2.881330e-01	k: 103195	n:360000
METTL8   360000 perm   133 sec   (2716 perm/sec)   p_kst 2.866528e-01   p_cons 3.322222e-03   p_joint 1.742222e-02

Joint ci ratio: 4.459717e-02	ci left: 1.999770e-02	ci right 2.091254e-02	k: 7567	n:370000
Cons ci ratio: 1.113592e-01	ci left: 3.151911e-03	ci right 3.526204e-03	k: 1234	n:370000
KS ci ratio: 1.016292e-02	ci left: 2.853242e-01	ci right 2.882413e-01	k: 106109	n:370000
METTL8   370000 perm   138 sec   (2689 perm/sec)   p_kst 2.867811e-01   p_cons 3.335135e-03   p_joint 2.045135e-02

Joint ci ratio: 4.431459e-02	ci left: 1.972901e-02	ci right 2.062569e-02	k: 7666	n:380000
Cons ci ratio: 1.098571e-01	ci left: 3.155965e-03	ci right 3.525357e-03	k: 1268	n:380000
KS ci ratio: 1.002862e-02	ci left: 2.853308e-01	ci right 2.882093e-01	k: 108972	n:380000
METTL8   380000 perm   143 sec   (2661 perm/sec)   p_kst 2.867684e-01   p_cons 3.336842e-03   p_joint 2.017368e-02

Joint ci ratio: 4.406321e-02	ci left: 1.945130e-02	ci right 2.033021e-02	k: 7756	n:390000
Cons ci ratio: 1.085817e-01	ci left: 3.149864e-03	ci right 3.513987e-03	k: 1298	n:390000
KS ci ratio: 9.895903e-03	ci left: 2.854859e-01	ci right 2.883276e-01	k: 111893	n:390000
METTL8   390000 perm   148 sec   (2633 perm/sec)   p_kst 2.869051e-01   p_cons 3.328205e-03   p_joint 1.988718e-02

Joint ci ratio: 4.582206e-02	ci left: 1.755563e-02	ci right 1.838138e-02	k: 7186	n:400000
Cons ci ratio: 1.065878e-01	ci left: 3.190325e-03	ci right 3.551928e-03	k: 1347	n:400000
KS ci ratio: 9.772023e-03	ci left: 2.854786e-01	ci right 2.882845e-01	k: 114752	n:400000
METTL8   400000 perm   154 sec   (2598 perm/sec)   p_kst 2.868800e-01   p_cons 3.367500e-03   p_joint 1.796500e-02

Joint ci ratio: 4.590059e-02	ci left: 1.707671e-02	ci right 1.788135e-02	k: 7165	n:410000
Cons ci ratio: 1.053450e-01	ci left: 3.188492e-03	ci right 3.545413e-03	k: 1379	n:410000
KS ci ratio: 9.649460e-03	ci left: 2.856083e-01	ci right 2.883800e-01	k: 117667	n:410000
METTL8   410000 perm   159 sec   (2573 perm/sec)   p_kst 2.869927e-01   p_cons 3.363415e-03   p_joint 1.747561e-02

Joint ci ratio: 4.687453e-02	ci left: 1.599450e-02	ci right 1.676457e-02	k: 6878	n:420000
Cons ci ratio: 1.041817e-01	ci left: 3.184451e-03	ci right 3.536742e-03	k: 1410	n:420000
KS ci ratio: 9.529234e-03	ci left: 2.858248e-01	ci right 2.885639e-01	k: 120621	n:420000
METTL8   420000 perm   165 sec   (2540 perm/sec)   p_kst 2.871929e-01   p_cons 3.357143e-03   p_joint 1.637619e-02

Joint ci ratio: 4.408742e-02	ci left: 1.765532e-02	ci right 1.845352e-02	k: 7762	n:430000
Cons ci ratio: 1.027704e-01	ci left: 3.198745e-03	ci right 3.547535e-03	k: 1449	n:430000
KS ci ratio: 9.419059e-03	ci left: 2.857852e-01	ci right 2.884921e-01	k: 123469	n:430000
METTL8   430000 perm   172 sec   (2493 perm/sec)   p_kst 2.871372e-01   p_cons 3.369767e-03   p_joint 1.805116e-02

Joint ci ratio: 4.501129e-02	ci left: 1.656389e-02	ci right 1.732885e-02	k: 7455	n:440000
Cons ci ratio: 1.016550e-01	ci left: 3.196914e-03	ci right 3.541495e-03	k: 1481	n:440000
KS ci ratio: 9.305953e-03	ci left: 2.860404e-01	ci right 2.887169e-01	k: 126446	n:440000
METTL8   440000 perm   179 sec   (2464 perm/sec)   p_kst 2.873773e-01   p_cons 3.365909e-03   p_joint 1.694318e-02

Joint ci ratio: 4.550959e-02	ci left: 1.585073e-02	ci right 1.659107e-02	k: 7298	n:450000
Cons ci ratio: 1.002436e-01	ci left: 3.216850e-03	ci right 3.558482e-03	k: 1523	n:450000
KS ci ratio: 9.200115e-03	ci left: 2.861379e-01	ci right 2.887848e-01	k: 129357	n:450000
METTL8   450000 perm   185 sec   (2432 perm/sec)   p_kst 2.874600e-01   p_cons 3.384444e-03   p_joint 1.621778e-02

Joint ci ratio: 4.499749e-02	ci left: 1.586509e-02	ci right 1.659754e-02	k: 7465	n:460000
Cons ci ratio: 9.907992e-02	ci left: 3.223230e-03	ci right 3.561334e-03	k: 1559	n:460000
KS ci ratio: 9.103266e-03	ci left: 2.859861e-01	ci right 2.886035e-01	k: 132155	n:460000
METTL8   460000 perm   192 sec   (2402 perm/sec)   p_kst 2.872935e-01   p_cons 3.389130e-03   p_joint 1.622826e-02

Outputting figure to mutsig2_images.part000000000104/METTL8.3_1260_460000_0.28729_0.0033891_0.016228.png
                gene_name: METTL8
               theta_stop: 0.099 
                    nperm: 460000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.0034 
      ci_cons_bounds_left: 0.0032 
     ci_cons_bounds_right: 0.0036 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 73 percent done.
MECP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.397717e-02	ci left: 3.358779e-01	ci right 3.546124e-01	k: 3452	n:10000
Cons ci ratio: 6.838763e-02	ci left: 2.387696e-01	ci right 2.557779e-01	k: 2472	n:10000
KS ci ratio: 8.386407e-02	ci left: 1.717274e-01	ci right 1.868599e-01	k: 1792	n:10000
MECP2   10000 perm   2 sec   (5925 perm/sec)   p_kst 1.792000e-01   p_cons 2.472000e-01   p_joint 3.452000e-01

Outputting figure to mutsig2_images.part000000000104/MECP2.2_1539_10000_0.1792_0.2472_0.3452.png
                gene_name: MECP2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 76 percent done.
MED27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.334826e-02	ci left: 1.428581e-01	ci right 1.569465e-01	k: 1498	n:10000
Cons ci ratio: 1.840292e-01	ci left: 3.939440e-02	ci right 4.747430e-02	k: 433	n:10000
KS ci ratio: 7.799618e-03	ci left: 9.580656e-01	ci right 9.656623e-01	k: 9620	n:10000
MED27   10000 perm   2 sec   (5059 perm/sec)   p_kst 9.620000e-01   p_cons 4.330000e-02   p_joint 1.498000e-01

Joint ci ratio: 9.355220e-02	ci left: 7.691238e-02	ci right 8.451004e-02	k: 1613	n:20000
Cons ci ratio: 1.293542e-01	ci left: 4.105370e-02	ci right 4.677985e-02	k: 877	n:20000
KS ci ratio: 5.646255e-03	ci left: 9.573980e-01	ci right 9.628672e-01	k: 19204	n:20000
MED27   20000 perm   4 sec   (4999 perm/sec)   p_kst 9.602000e-01   p_cons 4.385000e-02   p_joint 8.065000e-02

Joint ci ratio: 1.036178e-01	ci left: 4.316924e-02	ci right 4.791927e-02	k: 1365	n:30000
Cons ci ratio: 1.055762e-01	ci left: 4.160929e-02	ci right 4.627955e-02	k: 1317	n:30000
KS ci ratio: 4.629388e-03	ci left: 9.575840e-01	ci right 9.620597e-01	k: 28796	n:30000
MED27   30000 perm   6 sec   (4955 perm/sec)   p_kst 9.598667e-01   p_cons 4.390000e-02   p_joint 4.550000e-02

Joint ci ratio: 8.099007e-02	ci left: 5.307995e-02	ci right 5.758488e-02	k: 2212	n:40000
Cons ci ratio: 9.130526e-02	ci left: 4.203522e-02	ci right 4.608130e-02	k: 1761	n:40000
KS ci ratio: 3.963975e-03	ci left: 9.587752e-01	ci right 9.626076e-01	k: 38429	n:40000
MED27   40000 perm   8 sec   (4829 perm/sec)   p_kst 9.607250e-01   p_cons 4.402500e-02   p_joint 5.530000e-02

Outputting figure to mutsig2_images.part000000000104/MED27.2_968_40000_0.96073_0.044025_0.0553.png
                gene_name: MED27
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.058 

Current progress: 78 percent done.
MED4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.690770e-02	ci left: 6.704536e-01	ci right 6.888416e-01	k: 6797	n:10000
Cons ci ratio: 3.824936e-02	ci left: 5.023507e-01	ci right 5.220421e-01	k: 5122	n:10000
KS ci ratio: 3.339492e-02	ci left: 5.696526e-01	ci right 5.891012e-01	k: 5794	n:10000
MED4   10000 perm   2 sec   (6588 perm/sec)   p_kst 5.794000e-01   p_cons 5.122000e-01   p_joint 6.797000e-01

Outputting figure to mutsig2_images.part000000000104/MED4.2_841_10000_0.5794_0.5122_0.6797.png
                gene_name: MED4
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 80 percent done.
MEFV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.472956e-02	ci left: 7.063434e-01	ci right 7.241310e-01	k: 7153	n:10000
KS ci ratio: 2.613224e-02	ci left: 6.831489e-01	ci right 7.013390e-01	k: 6923	n:10000
MEFV   10000 perm   2 sec   (5060 perm/sec)   p_kst 6.923000e-01   p_cons 7.153000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MEFV.2_2386_10000_0.6923_0.7153_1.png
                gene_name: MEFV
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
MEGF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.658334e-02	ci left: 1.995881e-01	ci right 2.155826e-01	k: 2075	n:10000
Cons ci ratio: 3.519609e-02	ci left: 5.437922e-01	ci right 5.633765e-01	k: 5536	n:10000
KS ci ratio: 1.935483e-01	ci left: 3.557635e-02	ci right 4.329490e-02	k: 393	n:10000
MEGF6   10000 perm   2 sec   (4607 perm/sec)   p_kst 3.930000e-02   p_cons 5.536000e-01   p_joint 2.075000e-01

Joint ci ratio: 4.524428e-02	ci left: 2.666852e-01	ci right 2.790809e-01	k: 5457	n:20000
Cons ci ratio: 2.579322e-02	ci left: 5.289586e-01	ci right 5.428310e-01	k: 10718	n:20000
KS ci ratio: 1.357013e-01	ci left: 3.732625e-02	ci right 4.280850e-02	k: 800	n:20000
MEGF6   20000 perm   5 sec   (4130 perm/sec)   p_kst 4.000000e-02   p_cons 5.359000e-01   p_joint 2.728500e-01

Joint ci ratio: 2.600086e-02	ci left: 4.254197e-01	ci right 4.366603e-01	k: 12931	n:30000
Cons ci ratio: 2.110575e-02	ci left: 5.291693e-01	ci right 5.404906e-01	k: 16045	n:30000
KS ci ratio: 1.113569e-01	ci left: 3.745367e-02	ci right 4.190271e-02	k: 1189	n:30000
MEGF6   30000 perm   8 sec   (3952 perm/sec)   p_kst 3.963333e-02   p_cons 5.348333e-01   p_joint 4.310333e-01

Joint ci ratio: 1.733601e-02	ci left: 5.561700e-01	ci right 5.659212e-01	k: 22442	n:40000
Cons ci ratio: 1.829884e-02	ci left: 5.293718e-01	ci right 5.391732e-01	k: 21371	n:40000
KS ci ratio: 9.674552e-02	ci left: 3.751450e-02	ci right 4.135273e-02	k: 1576	n:40000
MEGF6   40000 perm   10 sec   (3829 perm/sec)   p_kst 3.940000e-02   p_cons 5.342750e-01   p_joint 5.610500e-01

Outputting figure to mutsig2_images.part000000000104/MEGF6.2_4774_40000_0.0394_0.53428_0.56105.png
                gene_name: MEGF6
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 84 percent done.
MEGF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.367929e-02	ci left: 1.419757e-01	ci right 1.560294e-01	k: 1489	n:10000
Cons ci ratio: 1.783012e-02	ci left: 8.210683e-01	ci right 8.359398e-01	k: 8286	n:10000
KS ci ratio: 2.663449e-01	ci left: 1.837333e-02	ci right 2.411031e-02	k: 211	n:10000
MEGF9   10000 perm   2 sec   (4902 perm/sec)   p_kst 2.110000e-02   p_cons 8.286000e-01   p_joint 1.489000e-01

Joint ci ratio: 4.376391e-02	ci left: 2.799920e-01	ci right 2.925701e-01	k: 5725	n:20000
Cons ci ratio: 1.243608e-02	ci left: 8.272009e-01	ci right 8.376023e-01	k: 16649	n:20000
KS ci ratio: 1.945223e-01	ci left: 1.796192e-02	ci right 2.187941e-02	k: 397	n:20000
MEGF9   20000 perm   4 sec   (4701 perm/sec)   p_kst 1.985000e-02   p_cons 8.324500e-01   p_joint 2.862500e-01

Joint ci ratio: 3.877924e-02	ci left: 2.491147e-01	ci right 2.589996e-01	k: 7621	n:30000
Cons ci ratio: 1.006092e-02	ci left: 8.307507e-01	ci right 8.391843e-01	k: 25050	n:30000
KS ci ratio: 1.620422e-01	ci left: 1.758116e-02	ci right 2.071294e-02	k: 573	n:30000
MEGF9   30000 perm   7 sec   (4573 perm/sec)   p_kst 1.910000e-02   p_cons 8.350000e-01   p_joint 2.540333e-01

Joint ci ratio: 3.610165e-02	ci left: 2.235233e-01	ci right 2.317662e-01	k: 9105	n:40000
Cons ci ratio: 8.701085e-03	ci left: 8.317040e-01	ci right 8.389972e-01	k: 33415	n:40000
KS ci ratio: 1.383498e-01	ci left: 1.831230e-02	ci right 2.105806e-02	k: 786	n:40000
MEGF9   40000 perm   9 sec   (4478 perm/sec)   p_kst 1.965000e-02   p_cons 8.353750e-01   p_joint 2.276250e-01

Joint ci ratio: 3.551703e-02	ci left: 1.924090e-01	ci right 1.993863e-01	k: 9794	n:50000
Cons ci ratio: 7.817365e-03	ci left: 8.308504e-01	ci right 8.373908e-01	k: 41707	n:50000
KS ci ratio: 1.224645e-01	ci left: 1.884899e-02	ci right 2.132717e-02	k: 1003	n:50000
MEGF9   50000 perm   12 sec   (4295 perm/sec)   p_kst 2.006000e-02   p_cons 8.341400e-01   p_joint 1.958800e-01

Joint ci ratio: 3.100665e-02	ci left: 2.070781e-01	ci right 2.136166e-01	k: 12620	n:60000
Cons ci ratio: 7.160450e-03	ci left: 8.301926e-01	ci right 8.361751e-01	k: 49992	n:60000
KS ci ratio: 1.116905e-01	ci left: 1.899197e-02	ci right 2.125478e-02	k: 1206	n:60000
MEGF9   60000 perm   14 sec   (4217 perm/sec)   p_kst 2.010000e-02   p_cons 8.332000e-01   p_joint 2.103333e-01

Joint ci ratio: 2.774896e-02	ci left: 2.187552e-01	ci right 2.249250e-01	k: 15528	n:70000
Cons ci ratio: 6.613938e-03	ci left: 8.310645e-01	ci right 8.365935e-01	k: 58369	n:70000
KS ci ratio: 1.034867e-01	ci left: 1.904529e-02	ci right 2.113762e-02	k: 1405	n:70000
MEGF9   70000 perm   17 sec   (4155 perm/sec)   p_kst 2.007143e-02   p_cons 8.338429e-01   p_joint 2.218286e-01

Joint ci ratio: 2.532531e-02	ci left: 2.275354e-01	ci right 2.333842e-01	k: 18436	n:80000
Cons ci ratio: 6.206685e-03	ci left: 8.303468e-01	ci right 8.355290e-01	k: 66636	n:80000
KS ci ratio: 9.646225e-02	ci left: 1.924851e-02	ci right 2.121150e-02	k: 1617	n:80000
MEGF9   80000 perm   20 sec   (4095 perm/sec)   p_kst 2.021250e-02   p_cons 8.329500e-01   p_joint 2.304500e-01

Outputting figure to mutsig2_images.part000000000104/MEGF9.2_1952_80000_0.020213_0.83295_0.23045.png
                gene_name: MEGF9
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.23 

Current progress: 86 percent done.
MEN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.554127e-02	ci left: 3.231670e-01	ci right 3.417307e-01	k: 3324	n:10000
KS ci ratio: 1.946594e-02	ci left: 7.942551e-01	ci right 8.099685e-01	k: 8022	n:10000
MEN1   10000 perm   2 sec   (5663 perm/sec)   p_kst 8.022000e-01   p_cons 3.324000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MEN1.2_1884_10000_0.8022_0.3324_1.png
                gene_name: MEN1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
MEP1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.239686e-03	ci left: 9.634151e-01	ci right 9.705095e-01	k: 9671	n:10000
Cons ci ratio: 1.442098e-01	ci left: 6.381856e-02	ci right 7.383439e-02	k: 687	n:10000
KS ci ratio: 3.007806e-01	ci left: 1.418736e-02	ci right 1.929975e-02	k: 166	n:10000
MEP1A   10000 perm   2 sec   (5834 perm/sec)   p_kst 1.660000e-02   p_cons 6.870000e-02   p_joint 9.671000e-01

Joint ci ratio: 5.131901e-03	ci left: 9.643268e-01	ci right 9.693363e-01	k: 19338	n:20000
Cons ci ratio: 1.021734e-01	ci left: 6.503709e-02	ci right 7.208897e-02	k: 1370	n:20000
KS ci ratio: 2.117242e-01	ci left: 1.506432e-02	ci right 1.867810e-02	k: 336	n:20000
MEP1A   20000 perm   4 sec   (5195 perm/sec)   p_kst 1.680000e-02   p_cons 6.850000e-02   p_joint 9.669000e-01

Joint ci ratio: 4.224014e-03	ci left: 9.642642e-01	ci right 9.683781e-01	k: 28991	n:30000
Cons ci ratio: 8.268265e-02	ci left: 6.681093e-02	ci right 7.260607e-02	k: 2090	n:30000
KS ci ratio: 1.705713e-01	ci left: 1.582285e-02	ci right 1.880502e-02	k: 518	n:30000
MEP1A   30000 perm   6 sec   (4950 perm/sec)   p_kst 1.726667e-02   p_cons 6.966667e-02   p_joint 9.663667e-01

Joint ci ratio: 3.672680e-03	ci left: 9.642798e-01	ci right 9.678521e-01	k: 38644	n:40000
Cons ci ratio: 7.188307e-02	ci left: 6.670712e-02	ci right 7.170564e-02	k: 2767	n:40000
KS ci ratio: 1.471795e-01	ci left: 1.614124e-02	ci right 1.872950e-02	k: 696	n:40000
MEP1A   40000 perm   8 sec   (4788 perm/sec)   p_kst 1.740000e-02   p_cons 6.917500e-02   p_joint 9.661000e-01

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 6.408561e-02	ci left: 6.738453e-02	ci right 7.186559e-02	k: 3480	n:50000
KS ci ratio: 1.312779e-01	ci left: 1.636874e-02	ci right 1.868776e-02	k: 875	n:50000
MEP1A   50000 perm   11 sec   (4664 perm/sec)   p_kst 1.750000e-02   p_cons 6.960000e-02   p_joint 1

Joint ci ratio: 6.533116e-05	ci left: 9.999385e-01	ci right 1	k: 60000	n:60000
Cons ci ratio: 5.835347e-02	ci left: 6.790517e-02	ci right 7.200321e-02	k: 4196	n:60000
KS ci ratio: 1.196201e-01	ci left: 1.653056e-02	ci right 1.864981e-02	k: 1054	n:60000
MEP1A   60000 perm   14 sec   (4291 perm/sec)   p_kst 1.756667e-02   p_cons 6.993333e-02   p_joint 1

Joint ci ratio: 2.796417e-03	ci left: 9.642378e-01	ci right 9.669520e-01	k: 67593	n:70000
Cons ci ratio: 5.405752e-02	ci left: 6.797952e-02	ci right 7.177051e-02	k: 4890	n:70000
KS ci ratio: 1.112926e-01	ci left: 1.644426e-02	ci right 1.839604e-02	k: 1218	n:70000
MEP1A   70000 perm   17 sec   (4180 perm/sec)   p_kst 1.740000e-02   p_cons 6.985714e-02   p_joint 9.656143e-01

Joint ci ratio: 2.610894e-03	ci left: 9.644537e-01	ci right 9.669873e-01	k: 77259	n:80000
Cons ci ratio: 5.040987e-02	ci left: 6.850075e-02	ci right 7.205549e-02	k: 5621	n:80000
KS ci ratio: 1.041483e-01	ci left: 1.649302e-02	ci right 1.831721e-02	k: 1391	n:80000
MEP1A   80000 perm   19 sec   (4127 perm/sec)   p_kst 1.738750e-02   p_cons 7.026250e-02   p_joint 9.657375e-01

Joint ci ratio: 2.458793e-03	ci left: 9.646033e-01	ci right 9.669888e-01	k: 86923	n:90000
Cons ci ratio: 4.748554e-02	ci left: 6.871501e-02	ci right 7.206830e-02	k: 6334	n:90000
KS ci ratio: 9.774830e-02	ci left: 1.669673e-02	ci right 1.842345e-02	k: 1579	n:90000
MEP1A   90000 perm   22 sec   (4075 perm/sec)   p_kst 1.754444e-02   p_cons 7.037778e-02   p_joint 9.658111e-01

Outputting figure to mutsig2_images.part000000000104/MEP1A.2_2297_90000_0.017544_0.070378_0.96581.png
                gene_name: MEP1A
               theta_stop: 0.098 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 90 percent done.
METT11D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.557882e-02	ci left: 3.228692e-01	ci right 3.414287e-01	k: 3321	n:10000
Cons ci ratio: 7.926594e-02	ci left: 1.886528e-01	ci right 2.043244e-01	k: 1964	n:10000
KS ci ratio: 7.432953e-02	ci left: 2.094474e-01	ci right 2.257174e-01	k: 2175	n:10000
METT11D1   10000 perm   2 sec   (5083 perm/sec)   p_kst 2.175000e-01   p_cons 1.964000e-01   p_joint 3.321000e-01

Outputting figure to mutsig2_images.part000000000104/METT11D1.2_1496_10000_0.2175_0.1964_0.3321.png
                gene_name: METT11D1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 92 percent done.
METTL2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.258607e-02	ci left: 3.477017e-01	ci right 3.665816e-01	k: 3571	n:10000
Cons ci ratio: 9.326530e-03	ci left: 9.419078e-01	ci right 9.508299e-01	k: 9465	n:10000
KS ci ratio: 1.097680e-01	ci left: 1.068582e-01	ci right 1.193681e-01	k: 1130	n:10000
METTL2B   10000 perm   2 sec   (5935 perm/sec)   p_kst 1.130000e-01   p_cons 9.465000e-01   p_joint 3.571000e-01

Joint ci ratio: 2.898137e-02	ci left: 4.707560e-01	ci right 4.846504e-01	k: 9554	n:20000
Cons ci ratio: 6.431553e-03	ci left: 9.458087e-01	ci right 9.519599e-01	k: 18979	n:20000
KS ci ratio: 7.683620e-02	ci left: 1.107082e-01	ci right 1.196041e-01	k: 2302	n:20000
METTL2B   20000 perm   4 sec   (5421 perm/sec)   p_kst 1.151000e-01   p_cons 9.489500e-01   p_joint 4.777000e-01

Outputting figure to mutsig2_images.part000000000104/METTL2B.2_1173_20000_0.1151_0.94895_0.4777.png
                gene_name: METTL2B
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 94 percent done.
METTL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.733220e-02	ci left: 8.291039e-01	ci right 8.436996e-01	k: 8365	n:10000
KS ci ratio: 1.492043e-02	ci left: 8.668259e-01	ci right 8.799557e-01	k: 8735	n:10000
METTL5   10000 perm   2 sec   (6136 perm/sec)   p_kst 8.735000e-01   p_cons 8.365000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/METTL5.2_658_10000_0.8735_0.8365_1.png
                gene_name: METTL5
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
MEX3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.616291e-02	ci left: 6.826450e-01	ci right 7.008432e-01	k: 6918	n:10000
KS ci ratio: 3.225711e-02	ci left: 5.865064e-01	ci right 6.058375e-01	k: 5962	n:10000
MEX3B   10000 perm   2 sec   (6067 perm/sec)   p_kst 5.962000e-01   p_cons 6.918000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000104/MEX3B.2_1718_10000_0.5962_0.6918_1.png
                gene_name: MEX3B
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
MEX3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.479894e-02	ci left: 3.291243e-01	ci right 3.477699e-01	k: 3384	n:10000
Cons ci ratio: 9.386443e-02	ci left: 1.414855e-01	ci right 1.555199e-01	k: 1484	n:10000
KS ci ratio: 1.060498e-01	ci left: 1.137899e-01	ci right 1.266323e-01	k: 1201	n:10000
MEX3C   10000 perm   2 sec   (5437 perm/sec)   p_kst 1.201000e-01   p_cons 1.484000e-01   p_joint 3.384000e-01

Joint ci ratio: 1.270479e-02	ci left: 8.210783e-01	ci right 8.316266e-01	k: 16528	n:20000
Cons ci ratio: 6.612505e-02	ci left: 1.444857e-01	ci right 1.544164e-01	k: 2988	n:20000
KS ci ratio: 7.516773e-02	ci left: 1.151825e-01	ci right 1.242283e-01	k: 2393	n:20000
MEX3C   20000 perm   4 sec   (4982 perm/sec)   p_kst 1.196500e-01   p_cons 1.494000e-01   p_joint 8.264000e-01

Outputting figure to mutsig2_images.part000000000104/MEX3C.2_1988_20000_0.11965_0.1494_0.8264.png
                gene_name: MEX3C
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000104
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 104 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1704>
Subject: Job 9894015: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1704>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000105> was used as the working directory.
Started at Sat Oct  6 00:18:03 2012
Results reported at Sat Oct  6 01:41:35 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000105.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000105.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 105  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000105.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   5066.92 sec.
    Max Memory :      3611 MB
    Max Swap   :      6086 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
105
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 105
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 105: processing genes 9377 - 9466
Calculating significance of each gene.
Using projection method.
9377	MFAP2	1
9378	MFAP3	7.225960e-01
9379	MFAP3L	4.026508e-01
9380	MFAP4	6.561298e-01
9381	MFAP5	1.766643e-01
9382	MFF	6.673816e-01
9383	MFGE8	6.993919e-01
9384	MFHAS1	6.297725e-01
9385	MFI2	9.095807e-01
9386	MFN1	7.331186e-01
9387	MFN2	5.426251e-01
9388	MFNG	1
9389	MFRP	4.694085e-01
9390	MFSD1	6.636132e-01
9391	MFSD10	9.444221e-01
9392	MFSD11	7.186899e-01
9393	MFSD2A	8.131204e-01
9394	MFSD2B	1.220138e-01
9395	MFSD3	1
9396	MFSD4	4.069124e-01
9397	MFSD5	1.306931e-01
9398	MFSD6	9.485527e-01
9399	MFSD6L	1
9400	MFSD7	1
9401	MFSD8	5.116766e-02
9402	MFSD9	1.386077e-01
9403	MGA	2.378995e-01
9404	MGAM	2.976334e-01
9405	MGAT1	7.128088e-01
9406	MGAT2	1
9407	MGAT3	8.795439e-01
9408	MGAT4A	5.388689e-01
9409	MGAT4B	9.739635e-01
9410	MGAT4C	1.666694e-02
9411	MGAT5	4.896660e-01
9412	MGAT5B	9.593537e-01
9413	MGC26647	2.524025e-05
9414	MGC29506	3.176996e-01
9415	MGC42105	1.005144e-05
9416	MGEA5	7.532527e-01
9417	MGLL	8.870457e-01
9418	MGMT	6.455342e-01
9419	MGP	1
9420	MGRN1	9.887229e-01
9421	MGST1	1.503254e-01
9422	MGST2	1
9423	MGST3	2.953626e-01
9424	MIA	3.554668e-01
9425	MIA2	3.484172e-01
9426	MIA3	4.816754e-01
9427	MIB1	9.135129e-01
9428	MIB2	1
9429	MICAL1	9.679595e-01
9430	MICAL2	7.685978e-01
9431	MICAL3	9.966228e-01
9432	MICALCL	6.406902e-01
9433	MICALL1	6.226811e-01
9434	MICALL2	1
9435	MICB	2.807540e-01
9436	MID1	4.695183e-01
9437	MID1IP1	3.599315e-01
9438	MID2	4.813190e-01
9439	MIDN	1
9440	MIER1	4.961733e-01
9441	MIER2	8.264189e-01
9442	MIER3	1.451161e-04
9443	MIF	1
9444	MIF4GD	1.280957e-01
9445	MIIP	2.723870e-01
9446	MINA	9.181942e-01
9447	MINK1	1
9448	MINPP1	9.305826e-01
9449	MIOS	8.314180e-01
9450	MIOX	6.260061e-01
9451	MIP	2.397332e-01
9452	MIPEP	3.288646e-01
9453	MIPOL1	5.891538e-01
9454	MIS12	5.288565e-01
9455	MITD1	3.034350e-01
9456	MITF	3.351201e-01
9457	MIXL1	1
9458	MKI67	3.006574e-01
9459	MKI67IP	1
9460	MKKS	6.720559e-01
9461	MKL1	9.423249e-01
9462	MKL2	9.495242e-01
9463	MKLN1	2.264674e-01
9464	MKNK1	7.793064e-01
9465	MKNK2	3.548518e-01
9466	MKRN1	3.429860e-01
Done

Running MutSig 2:
Scatter job 105: processing genes 9377 - 9466
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MKI67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.654068e-02	ci left: 5.251652e-01	ci right 5.448144e-01	k: 5350	n:10000
Cons ci ratio: 2.412351e-02	ci left: 7.164367e-01	ci right 7.340319e-01	k: 7253	n:10000
KS ci ratio: 4.822146e-02	ci left: 3.881880e-01	ci right 4.074716e-01	k: 3978	n:10000
MKI67   10000 perm   3 sec   (3241 perm/sec)   p_kst 3.978000e-01   p_cons 7.253000e-01   p_joint 5.350000e-01

Outputting figure to mutsig2_images.part000000000105/MKI67.23_9827_10000_0.3978_0.7253_0.535.png
                gene_name: MKI67
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.54 

Current progress: 2 percent done.
MGA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.264161e-02	ci left: 2.725021e-01	ci right 2.902255e-01	k: 2813	n:10000
Cons ci ratio: 5.769921e-02	ci left: 3.065949e-01	ci right 3.249125e-01	k: 3157	n:10000
KS ci ratio: 6.025129e-02	ci left: 2.883517e-01	ci right 3.063665e-01	k: 2973	n:10000
MGA   10000 perm   3 sec   (3377 perm/sec)   p_kst 2.973000e-01   p_cons 3.157000e-01   p_joint 2.813000e-01

Outputting figure to mutsig2_images.part000000000105/MGA.16_9290_10000_0.2973_0.3157_0.2813.png
                gene_name: MGA
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 3 percent done.
MGAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.483567e-02	ci left: 3.288264e-01	ci right 3.474680e-01	k: 3381	n:10000
Cons ci ratio: 1.034263e-01	ci left: 1.190667e-01	ci right 1.321523e-01	k: 1255	n:10000
KS ci ratio: 1.842942e-02	ci left: 8.113112e-01	ci right 8.265025e-01	k: 8190	n:10000
MGAM   10000 perm   3 sec   (3694 perm/sec)   p_kst 8.190000e-01   p_cons 1.255000e-01   p_joint 3.381000e-01

Joint ci ratio: 3.534977e-02	ci left: 3.739634e-01	ci right 3.874713e-01	k: 7614	n:20000
Cons ci ratio: 7.241124e-02	ci left: 1.231530e-01	ci right 1.324555e-01	k: 2555	n:20000
KS ci ratio: 1.320441e-02	ci left: 8.095985e-01	ci right 8.204098e-01	k: 16301	n:20000
MGAM   20000 perm   6 sec   (3537 perm/sec)   p_kst 8.150500e-01   p_cons 1.277500e-01   p_joint 3.807000e-01

Outputting figure to mutsig2_images.part000000000105/MGAM.13_5762_20000_0.81505_0.12775_0.3807.png
                gene_name: MGAM
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 5 percent done.
MIA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.543881e-02	ci left: 5.403863e-01	ci right 5.599845e-01	k: 5502	n:10000
Cons ci ratio: 1.015396e-01	ci left: 1.230758e-01	ci right 1.363408e-01	k: 1296	n:10000
KS ci ratio: 1.561441e-02	ci left: 8.562070e-01	ci right 8.697808e-01	k: 8631	n:10000
MIA3   10000 perm   2 sec   (4095 perm/sec)   p_kst 8.631000e-01   p_cons 1.296000e-01   p_joint 5.502000e-01

Joint ci ratio: 3.201827e-02	ci left: 4.214778e-01	ci right 4.352430e-01	k: 8567	n:20000
Cons ci ratio: 7.246001e-02	ci left: 1.230054e-01	ci right 1.323032e-01	k: 2552	n:20000
KS ci ratio: 1.109849e-02	ci left: 8.569902e-01	ci right 8.666043e-01	k: 17237	n:20000
MIA3   20000 perm   5 sec   (3762 perm/sec)   p_kst 8.618500e-01   p_cons 1.276000e-01   p_joint 4.283500e-01

Outputting figure to mutsig2_images.part000000000105/MIA3.13_5836_20000_0.86185_0.1276_0.42835.png
                gene_name: MIA3
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 7 percent done.
MGC42105
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.145934e-02	ci left: 5.985520e-01	ci right 6.177849e-01	k: 6082	n:10000
Cons ci ratio: 1.483936e-02	ci left: 8.680521e-01	ci right 8.811288e-01	k: 8747	n:10000
KS ci ratio: 4.819129e-02	ci left: 3.884867e-01	ci right 4.077727e-01	k: 3981	n:10000
MGC42105   10000 perm   2 sec   (5349 perm/sec)   p_kst 3.981000e-01   p_cons 8.747000e-01   p_joint 6.082000e-01

Outputting figure to mutsig2_images.part000000000105/MGC42105.11_1323_10000_0.3981_0.8747_0.6082.png
                gene_name: MGC42105
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 8 percent done.
MIER3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.593554e-02	ci left: 5.334756e-01	ci right 5.530992e-01	k: 5433	n:10000
Cons ci ratio: 3.668042e-02	ci left: 5.232632e-01	ci right 5.429175e-01	k: 5331	n:10000
KS ci ratio: 6.307811e-02	ci left: 2.697298e-01	ci right 2.873994e-01	k: 2785	n:10000
MIER3   10000 perm   2 sec   (4788 perm/sec)   p_kst 2.785000e-01   p_cons 5.331000e-01   p_joint 5.433000e-01

Outputting figure to mutsig2_images.part000000000105/MIER3.11_1702_10000_0.2785_0.5331_0.5433.png
                gene_name: MIER3
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 10 percent done.
MGAT4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.936649e-02	ci left: 1.882589e-01	ci right 2.039185e-01	k: 1960	n:10000
Cons ci ratio: 7.000510e-02	ci left: 2.302732e-01	ci right 2.470793e-01	k: 2386	n:10000
KS ci ratio: 9.316556e-02	ci left: 1.433484e-01	ci right 1.574560e-01	k: 1503	n:10000
MGAT4C   10000 perm   2 sec   (5642 perm/sec)   p_kst 1.503000e-01   p_cons 2.386000e-01   p_joint 1.960000e-01

Outputting figure to mutsig2_images.part000000000105/MGAT4C.8_1449_10000_0.1503_0.2386_0.196.png
                gene_name: MGAT4C
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 11 percent done.
MGC26647
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.504931e-02	ci left: 2.576556e-01	ci right 2.750807e-01	k: 2663	n:10000
Cons ci ratio: 2.353708e-02	ci left: 7.262324e-01	ci right 7.436305e-01	k: 7350	n:10000
KS ci ratio: 1.176608e-01	ci left: 9.399250e-02	ci right 1.058417e-01	k: 998	n:10000
MGC26647   10000 perm   2 sec   (5451 perm/sec)   p_kst 9.980000e-02   p_cons 7.350000e-01   p_joint 2.663000e-01

Joint ci ratio: 5.081680e-02	ci left: 2.234390e-01	ci right 2.351398e-01	k: 4585	n:20000
Cons ci ratio: 1.577278e-02	ci left: 7.493808e-01	ci right 7.613448e-01	k: 15108	n:20000
KS ci ratio: 8.242343e-02	ci left: 9.739693e-02	ci right 1.058193e-01	k: 2031	n:20000
MGC26647   20000 perm   4 sec   (4924 perm/sec)   p_kst 1.015500e-01   p_cons 7.554000e-01   p_joint 2.292500e-01

Outputting figure to mutsig2_images.part000000000105/MGC26647.7_766_20000_0.10155_0.7554_0.22925.png
                gene_name: MGC26647
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 13 percent done.
MFHAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.110596e-02	ci left: 4.663694e-01	ci right 4.860444e-01	k: 4762	n:10000
Cons ci ratio: 5.398911e-02	ci left: 3.357785e-01	ci right 3.545118e-01	k: 3451	n:10000
KS ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
MFHAS1   10000 perm   2 sec   (5051 perm/sec)   p_kst 3.267000e-01   p_cons 3.451000e-01   p_joint 4.762000e-01

Outputting figure to mutsig2_images.part000000000105/MFHAS1.6_3171_10000_0.3267_0.3451_0.4762.png
                gene_name: MFHAS1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 15 percent done.
MIA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.126700e-02	ci left: 7.642560e-01	ci right 7.807849e-01	k: 7726	n:10000
Cons ci ratio: 3.871119e-02	ci left: 4.963503e-01	ci right 5.160461e-01	k: 5062	n:10000
KS ci ratio: 1.856597e-02	ci left: 8.090764e-01	ci right 8.243387e-01	k: 8168	n:10000
MIA2   10000 perm   2 sec   (5468 perm/sec)   p_kst 8.168000e-01   p_cons 5.062000e-01   p_joint 7.726000e-01

Outputting figure to mutsig2_images.part000000000105/MIA2.6_1989_10000_0.8168_0.5062_0.7726.png
                gene_name: MIA2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 16 percent done.
MKLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.384107e-02	ci left: 4.344288e-01	ci right 4.540037e-01	k: 4442	n:10000
Cons ci ratio: 9.079719e-02	ci left: 1.499203e-01	ci right 1.642801e-01	k: 1570	n:10000
KS ci ratio: 4.261923e-02	ci left: 4.483979e-01	ci right 4.680265e-01	k: 4582	n:10000
MKLN1   10000 perm   2 sec   (5354 perm/sec)   p_kst 4.582000e-01   p_cons 1.570000e-01   p_joint 4.442000e-01

Outputting figure to mutsig2_images.part000000000105/MKLN1.6_2313_10000_0.4582_0.157_0.4442.png
                gene_name: MKLN1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 18 percent done.
MFSD2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.179031e-02	ci left: 5.935323e-01	ci right 6.128076e-01	k: 6032	n:10000
Cons ci ratio: 5.550376e-02	ci left: 3.234649e-01	ci right 3.420327e-01	k: 3327	n:10000
KS ci ratio: 3.023188e-02	ci left: 6.174357e-01	ci right 6.364903e-01	k: 6270	n:10000
MFSD2B   10000 perm   2 sec   (6515 perm/sec)   p_kst 6.270000e-01   p_cons 3.327000e-01   p_joint 6.032000e-01

Outputting figure to mutsig2_images.part000000000105/MFSD2B.5_1546_10000_0.627_0.3327_0.6032.png
                gene_name: MFSD2B
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 20 percent done.
MICAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.241153e-02	ci left: 1.768418e-01	ci right 1.921425e-01	k: 1844	n:10000
Cons ci ratio: 7.148093e-02	ci left: 2.228673e-01	ci right 2.394896e-01	k: 2311	n:10000
KS ci ratio: 8.931779e-02	ci left: 1.542387e-01	ci right 1.687591e-01	k: 1614	n:10000
MICAL2   10000 perm   2 sec   (5261 perm/sec)   p_kst 1.614000e-01   p_cons 2.311000e-01   p_joint 1.844000e-01

Outputting figure to mutsig2_images.part000000000105/MICAL2.5_3475_10000_0.1614_0.2311_0.1844.png
                gene_name: MICAL2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 21 percent done.
MIPEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.989902e-02	ci left: 1.861912e-01	ci right 2.017874e-01	k: 1939	n:10000
Cons ci ratio: 1.452325e-01	ci left: 6.294902e-02	ci right 7.290448e-02	k: 678	n:10000
KS ci ratio: 5.546629e-02	ci left: 3.237627e-01	ci right 3.423347e-01	k: 3330	n:10000
MIPEP   10000 perm   2 sec   (5174 perm/sec)   p_kst 3.330000e-01   p_cons 6.780000e-02   p_joint 1.939000e-01

Joint ci ratio: 6.059246e-02	ci left: 1.677807e-01	ci right 1.783146e-01	k: 3460	n:20000
Cons ci ratio: 1.057804e-01	ci left: 6.084156e-02	ci right 6.768579e-02	k: 1284	n:20000
KS ci ratio: 3.919412e-02	ci left: 3.268163e-01	ci right 3.399322e-01	k: 6667	n:20000
MIPEP   20000 perm   4 sec   (4648 perm/sec)   p_kst 3.333500e-01   p_cons 6.420000e-02   p_joint 1.730000e-01

Joint ci ratio: 4.427892e-02	ci left: 2.025264e-01	ci right 2.117304e-01	k: 6213	n:30000
Cons ci ratio: 8.178232e-02	ci left: 6.821689e-02	ci right 7.406650e-02	k: 2133	n:30000
KS ci ratio: 3.229203e-02	ci left: 3.240485e-01	ci right 3.347179e-01	k: 9881	n:30000
MIPEP   30000 perm   7 sec   (4504 perm/sec)   p_kst 3.293667e-01   p_cons 7.110000e-02   p_joint 2.071000e-01

Outputting figure to mutsig2_images.part000000000105/MIPEP.5_2218_30000_0.32937_0.0711_0.2071.png
                gene_name: MIPEP
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 23 percent done.
MITF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.657465e-02	ci left: 6.758935e-01	ci right 6.941986e-01	k: 6851	n:10000
Cons ci ratio: 2.159954e-02	ci left: 7.586885e-01	ci right 7.753556e-01	k: 7671	n:10000
KS ci ratio: 3.991392e-02	ci left: 4.810557e-01	ci right 5.007496e-01	k: 4909	n:10000
MITF   10000 perm   2 sec   (5580 perm/sec)   p_kst 4.909000e-01   p_cons 7.671000e-01   p_joint 6.851000e-01

Outputting figure to mutsig2_images.part000000000105/MITF.5_1842_10000_0.4909_0.7671_0.6851.png
                gene_name: MITF
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 25 percent done.
MFAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.764019e-02	ci left: 1.319816e-01	ci right 1.456295e-01	k: 1387	n:10000
Cons ci ratio: 2.195183e-01	ci left: 2.750089e-02	ci right 3.437595e-02	k: 308	n:10000
KS ci ratio: 1.942301e-02	ci left: 7.949654e-01	ci right 8.106578e-01	k: 8029	n:10000
MFAP5   10000 perm   1 sec   (6692 perm/sec)   p_kst 8.029000e-01   p_cons 3.080000e-02   p_joint 1.387000e-01

Joint ci ratio: 7.653606e-02	ci left: 1.114947e-01	ci right 1.204173e-01	k: 2318	n:20000
Cons ci ratio: 1.765700e-01	ci left: 2.192330e-02	ci right 2.621660e-02	k: 480	n:20000
KS ci ratio: 1.372084e-02	ci left: 7.976210e-01	ci right 8.086907e-01	k: 16064	n:20000
MFAP5   20000 perm   3 sec   (5891 perm/sec)   p_kst 8.032000e-01   p_cons 2.400000e-02   p_joint 1.159000e-01

Joint ci ratio: 5.957906e-02	ci left: 1.223303e-01	ci right 1.298756e-01	k: 3782	n:30000
Cons ci ratio: 1.417235e-01	ci left: 2.310186e-02	ci right 2.665763e-02	k: 745	n:30000
KS ci ratio: 1.122066e-02	ci left: 7.981508e-01	ci right 8.071905e-01	k: 24081	n:30000
MFAP5   30000 perm   5 sec   (5573 perm/sec)   p_kst 8.027000e-01   p_cons 2.483333e-02   p_joint 1.260667e-01

Joint ci ratio: 4.576744e-02	ci left: 1.514165e-01	ci right 1.585337e-01	k: 6198	n:40000
Cons ci ratio: 1.239995e-01	ci left: 2.286163e-02	ci right 2.590796e-02	k: 974	n:40000
KS ci ratio: 9.746474e-03	ci left: 7.978087e-01	ci right 8.056475e-01	k: 32070	n:40000
MFAP5   40000 perm   7 sec   (5385 perm/sec)   p_kst 8.017500e-01   p_cons 2.435000e-02   p_joint 1.549500e-01

Joint ci ratio: 4.197854e-02	ci left: 1.453738e-01	ci right 1.516271e-01	k: 7424	n:50000
Cons ci ratio: 1.114608e-01	ci left: 2.279291e-02	ci right 2.550273e-02	k: 1206	n:50000
KS ci ratio: 8.901103e-03	ci left: 7.914746e-01	ci right 7.985711e-01	k: 39752	n:50000
MFAP5   50000 perm   10 sec   (5243 perm/sec)   p_kst 7.950400e-01   p_cons 2.412000e-02   p_joint 1.484800e-01

Joint ci ratio: 3.768005e-02	ci left: 1.499296e-01	ci right 1.557040e-01	k: 9168	n:60000
Cons ci ratio: 1.018360e-01	ci left: 2.287136e-02	ci right 2.534163e-02	k: 1445	n:60000
KS ci ratio: 8.126963e-03	ci left: 7.917304e-01	ci right 7.982077e-01	k: 47699	n:60000
MFAP5   60000 perm   12 sec   (5115 perm/sec)   p_kst 7.949833e-01   p_cons 2.408333e-02   p_joint 1.528000e-01

Joint ci ratio: 3.847207e-02	ci left: 1.266668e-01	ci right 1.316497e-01	k: 9040	n:70000
Cons ci ratio: 8.648108e-02	ci left: 2.727977e-02	ci right 2.975952e-02	k: 1995	n:70000
KS ci ratio: 7.510854e-03	ci left: 7.925502e-01	ci right 7.985396e-01	k: 55689	n:70000
MFAP5   70000 perm   14 sec   (5000 perm/sec)   p_kst 7.955571e-01   p_cons 2.850000e-02   p_joint 1.291429e-01

Outputting figure to mutsig2_images.part000000000105/MFAP5.4_558_70000_0.79556_0.0285_0.12914.png
                gene_name: MFAP5
               theta_stop: 0.086 
                    nperm: 70000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 26 percent done.
MFN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.787022e-01	ci left: 8.595766e-03	ci right 1.269681e-02	k: 105	n:10000
Cons ci ratio: 6.455374e-02	ci left: 2.606239e-01	ci right 2.781107e-01	k: 2693	n:10000
KS ci ratio: 7.677370e-01	ci left: 1.618501e-03	ci right 3.688296e-03	k: 25	n:10000
MFN2   10000 perm   2 sec   (5420 perm/sec)   p_kst 2.500000e-03   p_cons 2.693000e-01   p_joint 1.050000e-02

Joint ci ratio: 4.099816e-01	ci left: 3.620038e-03	ci right 5.528410e-03	k: 90	n:20000
Cons ci ratio: 4.694540e-02	ci left: 2.523932e-01	ci right 2.645771e-01	k: 5169	n:20000
KS ci ratio: 5.278323e-01	ci left: 2.028954e-03	ci right 3.521464e-03	k: 54	n:20000
MFN2   20000 perm   4 sec   (4847 perm/sec)   p_kst 2.700000e-03   p_cons 2.584500e-01   p_joint 4.500000e-03

Joint ci ratio: 2.319143e-01	ci left: 8.339104e-03	ci right 1.055746e-02	k: 282	n:30000
Cons ci ratio: 3.826432e-02	ci left: 2.541820e-01	ci right 2.641313e-01	k: 7774	n:30000
KS ci ratio: 4.376773e-01	ci left: 2.085372e-03	ci right 3.280854e-03	k: 79	n:30000
MFN2   30000 perm   6 sec   (4656 perm/sec)   p_kst 2.633333e-03   p_cons 2.591333e-01   p_joint 9.400000e-03

Joint ci ratio: 2.437331e-01	ci left: 5.642032e-03	ci right 7.230899e-03	k: 256	n:40000
Cons ci ratio: 3.297617e-02	ci left: 2.567260e-01	ci right 2.653588e-01	k: 10441	n:40000
KS ci ratio: 3.876378e-01	ci left: 2.057110e-03	ci right 3.067270e-03	k: 101	n:40000
MFN2   40000 perm   9 sec   (4526 perm/sec)   p_kst 2.525000e-03   p_cons 2.610250e-01   p_joint 6.400000e-03

Joint ci ratio: 2.513741e-01	ci left: 4.231828e-03	ci right 5.466739e-03	k: 241	n:50000
Cons ci ratio: 2.957990e-02	ci left: 2.560797e-01	ci right 2.637882e-01	k: 12996	n:50000
KS ci ratio: 3.544634e-01	ci left: 2.008446e-03	ci right 2.890909e-03	k: 121	n:50000
MFN2   50000 perm   11 sec   (4426 perm/sec)   p_kst 2.420000e-03   p_cons 2.599200e-01   p_joint 4.820000e-03

Joint ci ratio: 2.268959e-01	ci left: 4.388437e-03	ci right 5.526926e-03	k: 296	n:60000
Cons ci ratio: 2.693892e-02	ci left: 2.573233e-01	ci right 2.643666e-01	k: 15650	n:60000
KS ci ratio: 3.274133e-01	ci left: 1.993779e-03	ci right 2.788911e-03	k: 142	n:60000
MFN2   60000 perm   14 sec   (4340 perm/sec)   p_kst 2.366667e-03   p_cons 2.608333e-01   p_joint 4.933333e-03

Joint ci ratio: 2.293147e-01	ci left: 3.680541e-03	ci right 4.646986e-03	k: 290	n:70000
Cons ci ratio: 2.491430e-02	ci left: 2.579913e-01	ci right 2.645143e-01	k: 18287	n:70000
KS ci ratio: 2.968027e-01	ci left: 2.117225e-03	ci right 2.867822e-03	k: 173	n:70000
MFN2   70000 perm   16 sec   (4261 perm/sec)   p_kst 2.471429e-03   p_cons 2.612429e-01   p_joint 4.142857e-03

Joint ci ratio: 2.394979e-01	ci left: 2.937944e-03	ci right 3.748734e-03	k: 266	n:80000
Cons ci ratio: 2.333889e-02	ci left: 2.576478e-01	ci right 2.637445e-01	k: 20855	n:80000
KS ci ratio: 2.840470e-01	ci left: 2.037996e-03	ci right 2.723889e-03	k: 189	n:80000
MFN2   80000 perm   19 sec   (4185 perm/sec)   p_kst 2.362500e-03   p_cons 2.606875e-01   p_joint 3.325000e-03

Joint ci ratio: 2.318315e-01	ci left: 2.799675e-03	ci right 3.544029e-03	k: 284	n:90000
Cons ci ratio: 2.205688e-02	ci left: 2.569040e-01	ci right 2.626448e-01	k: 23379	n:90000
KS ci ratio: 2.701884e-01	ci left: 2.018339e-03	ci right 2.658858e-03	k: 209	n:90000
MFN2   90000 perm   22 sec   (4109 perm/sec)   p_kst 2.322222e-03   p_cons 2.597667e-01   p_joint 3.155556e-03

Joint ci ratio: 2.282816e-01	ci left: 2.604489e-03	ci right 3.284849e-03	k: 293	n:100000
Cons ci ratio: 2.099256e-02	ci left: 2.558184e-01	ci right 2.612556e-01	k: 25853	n:100000
KS ci ratio: 2.565071e-01	ci left: 2.031332e-03	ci right 2.638111e-03	k: 232	n:100000
MFN2   100000 perm   25 sec   (4012 perm/sec)   p_kst 2.320000e-03   p_cons 2.585300e-01   p_joint 2.930000e-03

Joint ci ratio: 2.314919e-01	ci left: 2.299135e-03	ci right 2.909379e-03	k: 285	n:110000
Cons ci ratio: 1.999164e-02	ci left: 2.564039e-01	ci right 2.615906e-01	k: 28489	n:110000
KS ci ratio: 2.418887e-01	ci left: 2.093859e-03	ci right 2.678327e-03	k: 261	n:110000
MFN2   110000 perm   28 sec   (3953 perm/sec)   p_kst 2.372727e-03   p_cons 2.589909e-01   p_joint 2.590909e-03

Joint ci ratio: 1.961649e-01	ci left: 2.991326e-03	ci right 3.649705e-03	k: 397	n:120000
Cons ci ratio: 1.916050e-02	ci left: 2.561160e-01	ci right 2.610790e-01	k: 31031	n:120000
KS ci ratio: 2.339904e-01	ci left: 2.060426e-03	ci right 2.614064e-03	k: 279	n:120000
MFN2   120000 perm   31 sec   (3881 perm/sec)   p_kst 2.325000e-03   p_cons 2.585917e-01   p_joint 3.308333e-03

Joint ci ratio: 1.952086e-01	ci left: 2.790457e-03	ci right 3.401272e-03	k: 401	n:130000
Cons ci ratio: 1.842138e-02	ci left: 2.559529e-01	ci right 2.607194e-01	k: 33583	n:130000
KS ci ratio: 2.249347e-01	ci left: 2.068688e-03	ci right 2.600054e-03	k: 302	n:130000
MFN2   130000 perm   34 sec   (3813 perm/sec)   p_kst 2.323077e-03   p_cons 2.583308e-01   p_joint 3.084615e-03

Joint ci ratio: 1.891898e-01	ci left: 2.767915e-03	ci right 3.352968e-03	k: 427	n:140000
Cons ci ratio: 1.773357e-02	ci left: 2.564218e-01	ci right 2.610168e-01	k: 36220	n:140000
KS ci ratio: 2.142361e-01	ci left: 2.130189e-03	ci right 2.647908e-03	k: 333	n:140000
MFN2   140000 perm   37 sec   (3751 perm/sec)   p_kst 2.378571e-03   p_cons 2.587143e-01   p_joint 3.050000e-03

Joint ci ratio: 1.870306e-01	ci left: 2.646898e-03	ci right 3.199260e-03	k: 437	n:150000
Cons ci ratio: 1.713321e-02	ci left: 2.564786e-01	ci right 2.609174e-01	k: 38804	n:150000
KS ci ratio: 2.089885e-01	ci left: 2.095500e-03	ci right 2.590717e-03	k: 350	n:150000
MFN2   150000 perm   41 sec   (3692 perm/sec)   p_kst 2.333333e-03   p_cons 2.586933e-01   p_joint 2.913333e-03

Joint ci ratio: 1.910246e-01	ci left: 2.374258e-03	ci right 2.881533e-03	k: 419	n:160000
Cons ci ratio: 1.704681e-02	ci left: 2.462780e-01	ci right 2.505186e-01	k: 39743	n:160000
KS ci ratio: 2.032795e-01	ci left: 2.083078e-03	ci right 2.560242e-03	k: 370	n:160000
MFN2   160000 perm   44 sec   (3638 perm/sec)   p_kst 2.312500e-03   p_cons 2.483937e-01   p_joint 2.618750e-03

Joint ci ratio: 1.972572e-01	ci left: 2.089056e-03	ci right 2.551708e-03	k: 393	n:170000
Cons ci ratio: 1.653107e-02	ci left: 2.464940e-01	ci right 2.506086e-01	k: 42253	n:170000
KS ci ratio: 1.982685e-01	ci left: 2.066689e-03	ci right 2.527018e-03	k: 389	n:170000
MFN2   170000 perm   47 sec   (3587 perm/sec)   p_kst 2.288235e-03   p_cons 2.485471e-01   p_joint 2.311765e-03

Joint ci ratio: 1.618080e-01	ci left: 2.986985e-03	ci right 3.518101e-03	k: 584	n:180000
Cons ci ratio: 1.605971e-02	ci left: 2.466822e-01	ci right 2.506814e-01	k: 44762	n:180000
KS ci ratio: 1.929029e-01	ci left: 2.068111e-03	ci right 2.514828e-03	k: 411	n:180000
MFN2   180000 perm   51 sec   (3543 perm/sec)   p_kst 2.283333e-03   p_cons 2.486778e-01   p_joint 3.244444e-03

Joint ci ratio: 1.611327e-01	ci left: 2.855012e-03	ci right 3.360337e-03	k: 589	n:190000
Cons ci ratio: 1.560408e-02	ci left: 2.473875e-01	ci right 2.512833e-01	k: 47373	n:190000
KS ci ratio: 1.875179e-01	ci left: 2.079565e-03	ci right 2.514790e-03	k: 435	n:190000
MFN2   190000 perm   54 sec   (3500 perm/sec)   p_kst 2.289474e-03   p_cons 2.493316e-01   p_joint 3.100000e-03

Joint ci ratio: 1.588659e-01	ci left: 2.793851e-03	ci right 3.280730e-03	k: 606	n:200000
Cons ci ratio: 1.521393e-02	ci left: 2.473154e-01	ci right 2.511119e-01	k: 49842	n:200000
KS ci ratio: 1.829593e-01	ci left: 2.080487e-03	ci right 2.504145e-03	k: 457	n:200000
MFN2   200000 perm   58 sec   (3446 perm/sec)   p_kst 2.285000e-03   p_cons 2.492100e-01   p_joint 3.030000e-03

Joint ci ratio: 1.598042e-01	ci left: 2.628788e-03	ci right 3.089866e-03	k: 599	n:210000
Cons ci ratio: 1.484466e-02	ci left: 2.474271e-01	ci right 2.511322e-01	k: 52348	n:210000
KS ci ratio: 1.802293e-01	ci left: 2.045049e-03	ci right 2.454599e-03	k: 471	n:210000
MFN2   210000 perm   62 sec   (3406 perm/sec)   p_kst 2.242857e-03   p_cons 2.492762e-01   p_joint 2.852381e-03

Joint ci ratio: 1.550907e-01	ci left: 2.670859e-03	ci right 3.124214e-03	k: 636	n:220000
Cons ci ratio: 1.449065e-02	ci left: 2.477971e-01	ci right 2.514186e-01	k: 54913	n:220000
KS ci ratio: 1.747580e-01	ci left: 2.082402e-03	ci right 2.485436e-03	k: 501	n:220000
MFN2   220000 perm   65 sec   (3366 perm/sec)   p_kst 2.277273e-03   p_cons 2.496045e-01   p_joint 2.890909e-03

Joint ci ratio: 1.515624e-01	ci left: 2.680166e-03	ci right 3.123813e-03	k: 666	n:230000
Cons ci ratio: 1.417561e-02	ci left: 2.477455e-01	ci right 2.512869e-01	k: 57388	n:230000
KS ci ratio: 1.713786e-01	ci left: 2.075052e-03	ci right 2.468094e-03	k: 521	n:230000
MFN2   230000 perm   69 sec   (3325 perm/sec)   p_kst 2.265217e-03   p_cons 2.495130e-01   p_joint 2.895652e-03

Joint ci ratio: 1.546235e-01	ci left: 2.464287e-03	ci right 2.881201e-03	k: 640	n:240000
Cons ci ratio: 1.388010e-02	ci left: 2.477032e-01	ci right 2.511695e-01	k: 59864	n:240000
KS ci ratio: 1.663522e-01	ci left: 2.116294e-03	ci right 2.504215e-03	k: 553	n:240000
MFN2   240000 perm   73 sec   (3284 perm/sec)   p_kst 2.304167e-03   p_cons 2.494333e-01   p_joint 2.666667e-03

Joint ci ratio: 1.252307e-01	ci left: 3.659445e-03	ci right 4.152166e-03	k: 975	n:250000
Cons ci ratio: 1.359987e-02	ci left: 2.477328e-01	ci right 2.511290e-01	k: 62357	n:250000
KS ci ratio: 1.632869e-01	ci left: 2.112177e-03	ci right 2.491509e-03	k: 574	n:250000
MFN2   250000 perm   77 sec   (3245 perm/sec)   p_kst 2.296000e-03   p_cons 2.494280e-01   p_joint 3.900000e-03

Joint ci ratio: 1.256284e-01	ci left: 3.496326e-03	ci right 3.968689e-03	k: 969	n:260000
Cons ci ratio: 1.333746e-02	ci left: 2.477186e-01	ci right 2.510485e-01	k: 64839	n:260000
KS ci ratio: 1.602503e-01	ci left: 2.112130e-03	ci right 2.483719e-03	k: 596	n:260000
MFN2   260000 perm   81 sec   (3207 perm/sec)   p_kst 2.292308e-03   p_cons 2.493808e-01   p_joint 3.726923e-03

Joint ci ratio: 1.237934e-01	ci left: 3.470886e-03	ci right 3.932461e-03	k: 998	n:270000
Cons ci ratio: 1.309200e-02	ci left: 2.476395e-01	ci right 2.509066e-01	k: 67303	n:270000
KS ci ratio: 1.578892e-01	ci left: 2.097914e-03	ci right 2.461050e-03	k: 614	n:270000
MFN2   270000 perm   85 sec   (3169 perm/sec)   p_kst 2.274074e-03   p_cons 2.492704e-01   p_joint 3.696296e-03

Joint ci ratio: 1.239886e-01	ci left: 3.336529e-03	ci right 3.780987e-03	k: 995	n:280000
Cons ci ratio: 1.286097e-02	ci left: 2.475274e-01	ci right 2.507350e-01	k: 69756	n:280000
KS ci ratio: 1.557529e-01	ci left: 2.081319e-03	ci right 2.436252e-03	k: 631	n:280000
MFN2   280000 perm   89 sec   (3132 perm/sec)   p_kst 2.253571e-03   p_cons 2.491286e-01   p_joint 3.553571e-03

Joint ci ratio: 1.261759e-01	ci left: 3.107880e-03	ci right 3.529728e-03	k: 961	n:290000
Cons ci ratio: 1.262929e-02	ci left: 2.477917e-01	ci right 2.509444e-01	k: 72316	n:290000
KS ci ratio: 1.524118e-01	ci left: 2.102381e-03	ci right 2.452512e-03	k: 659	n:290000
MFN2   290000 perm   94 sec   (3096 perm/sec)   p_kst 2.272414e-03   p_cons 2.493655e-01   p_joint 3.313793e-03

Joint ci ratio: 1.000594e-01	ci left: 4.835227e-03	ci right 5.347739e-03	k: 1526	n:300000
Cons ci ratio: 1.241289e-02	ci left: 2.479423e-01	ci right 2.510425e-01	k: 74847	n:300000
KS ci ratio: 1.494948e-01	ci left: 2.115696e-03	ci right 2.460698e-03	k: 685	n:300000
MFN2   300000 perm   98 sec   (3062 perm/sec)   p_kst 2.283333e-03   p_cons 2.494900e-01   p_joint 5.086667e-03

Joint ci ratio: 1.056341e-01	ci left: 4.188886e-03	ci right 4.659162e-03	k: 1370	n:310000
Cons ci ratio: 1.221293e-02	ci left: 2.479099e-01	ci right 2.509593e-01	k: 77324	n:310000
KS ci ratio: 1.467392e-01	ci left: 2.128211e-03	ci right 2.468297e-03	k: 711	n:310000
MFN2   310000 perm   102 sec   (3025 perm/sec)   p_kst 2.293548e-03   p_cons 2.494323e-01   p_joint 4.419355e-03

Joint ci ratio: 1.072643e-01	ci left: 3.933241e-03	ci right 4.382061e-03	k: 1329	n:320000
Cons ci ratio: 1.202414e-02	ci left: 2.478237e-01	ci right 2.508246e-01	k: 79783	n:320000
KS ci ratio: 1.446224e-01	ci left: 2.124937e-03	ci right 2.459178e-03	k: 732	n:320000
MFN2   320000 perm   107 sec   (2992 perm/sec)   p_kst 2.287500e-03   p_cons 2.493219e-01   p_joint 4.153125e-03

Joint ci ratio: 9.204004e-02	ci left: 5.214969e-03	ci right 5.721047e-03	k: 1803	n:330000
Cons ci ratio: 1.184173e-02	ci left: 2.478096e-01	ci right 2.507645e-01	k: 82264	n:330000
KS ci ratio: 1.421230e-01	ci left: 2.136508e-03	ci right 2.466269e-03	k: 758	n:330000
MFN2   330000 perm   112 sec   (2959 perm/sec)   p_kst 2.296970e-03   p_cons 2.492848e-01   p_joint 5.463636e-03

Joint ci ratio: 9.227919e-02	ci left: 5.035706e-03	ci right 5.525725e-03	k: 1794	n:340000
Cons ci ratio: 1.166829e-02	ci left: 2.477673e-01	ci right 2.506782e-01	k: 84735	n:340000
KS ci ratio: 1.404682e-01	ci left: 2.124738e-03	ci right 2.448544e-03	k: 776	n:340000
MFN2   340000 perm   116 sec   (2927 perm/sec)   p_kst 2.282353e-03   p_cons 2.492206e-01   p_joint 5.276471e-03

Joint ci ratio: 9.265006e-02	ci left: 4.852732e-03	ci right 5.326947e-03	k: 1780	n:350000
Cons ci ratio: 1.150560e-02	ci left: 2.476194e-01	ci right 2.504877e-01	k: 87168	n:350000
KS ci ratio: 1.390453e-01	ci left: 2.108146e-03	ci right 2.425899e-03	k: 792	n:350000
MFN2   350000 perm   121 sec   (2895 perm/sec)   p_kst 2.262857e-03   p_cons 2.490514e-01   p_joint 5.085714e-03

Joint ci ratio: 9.247419e-02	ci left: 4.736916e-03	ci right 5.198886e-03	k: 1787	n:360000
Cons ci ratio: 1.134581e-02	ci left: 2.476019e-01	ci right 2.504299e-01	k: 89645	n:360000
KS ci ratio: 1.373249e-01	ci left: 2.103221e-03	ci right 2.415989e-03	k: 812	n:360000
MFN2   360000 perm   126 sec   (2865 perm/sec)   p_kst 2.255556e-03   p_cons 2.490139e-01   p_joint 4.963889e-03

Joint ci ratio: 9.140780e-02	ci left: 4.719792e-03	ci right 5.174500e-03	k: 1829	n:370000
Cons ci ratio: 1.118798e-02	ci left: 2.477367e-01	ci right 2.505267e-01	k: 92178	n:370000
KS ci ratio: 1.352605e-01	ci left: 2.111641e-03	ci right 2.420561e-03	k: 837	n:370000
MFN2   370000 perm   131 sec   (2834 perm/sec)   p_kst 2.262162e-03   p_cons 2.491297e-01   p_joint 4.943243e-03

Joint ci ratio: 9.405843e-02	ci left: 4.335920e-03	ci right 4.766425e-03	k: 1728	n:380000
Cons ci ratio: 1.103919e-02	ci left: 2.477754e-01	ci right 2.505284e-01	k: 94677	n:380000
KS ci ratio: 1.336752e-01	ci left: 2.106932e-03	ci right 2.411264e-03	k: 857	n:380000
MFN2   380000 perm   136 sec   (2801 perm/sec)   p_kst 2.255263e-03   p_cons 2.491500e-01   p_joint 4.547368e-03

Joint ci ratio: 9.403663e-02	ci left: 4.227235e-03	ci right 4.646847e-03	k: 1729	n:390000
Cons ci ratio: 1.089738e-02	ci left: 2.477714e-01	ci right 2.504888e-01	k: 97160	n:390000
KS ci ratio: 1.323713e-01	ci left: 2.095047e-03	ci right 2.394477e-03	k: 874	n:390000
MFN2   390000 perm   141 sec   (2771 perm/sec)   p_kst 2.241026e-03   p_cons 2.491282e-01   p_joint 4.433333e-03

Joint ci ratio: 9.795747e-02	ci left: 3.792112e-03	ci right 4.185127e-03	k: 1594	n:400000
Cons ci ratio: 1.075745e-02	ci left: 2.478876e-01	ci right 2.505711e-01	k: 99691	n:400000
KS ci ratio: 1.310311e-01	ci left: 2.086187e-03	ci right 2.381098e-03	k: 892	n:400000
MFN2   400000 perm   146 sec   (2743 perm/sec)   p_kst 2.230000e-03   p_cons 2.492275e-01   p_joint 3.985000e-03

Joint ci ratio: 8.696038e-02	ci left: 4.717178e-03	ci right 5.148400e-03	k: 2021	n:410000
Cons ci ratio: 1.062471e-02	ci left: 2.479301e-01	ci right 2.505808e-01	k: 102194	n:410000
KS ci ratio: 1.294464e-01	ci left: 2.087215e-03	ci right 2.378428e-03	k: 914	n:410000
MFN2   410000 perm   151 sec   (2715 perm/sec)   p_kst 2.229268e-03   p_cons 2.492537e-01   p_joint 4.929268e-03

Joint ci ratio: 8.817877e-02	ci left: 4.476756e-03	ci right 4.892028e-03	k: 1966	n:420000
Cons ci ratio: 1.050171e-02	ci left: 2.477949e-01	ci right 2.504133e-01	k: 104623	n:420000
KS ci ratio: 1.279177e-01	ci left: 2.088214e-03	ci right 2.375865e-03	k: 936	n:420000
MFN2   420000 perm   156 sec   (2688 perm/sec)   p_kst 2.228571e-03   p_cons 2.491024e-01   p_joint 4.680952e-03

Joint ci ratio: 8.059036e-02	ci left: 5.251494e-03	ci right 5.694745e-03	k: 2352	n:430000
Cons ci ratio: 1.037952e-02	ci left: 2.477870e-01	ci right 2.503746e-01	k: 107104	n:430000
KS ci ratio: 1.265744e-01	ci left: 2.084682e-03	ci right 2.368604e-03	k: 956	n:430000
MFN2   430000 perm   162 sec   (2660 perm/sec)   p_kst 2.223256e-03   p_cons 2.490791e-01   p_joint 5.469767e-03

Joint ci ratio: 7.983150e-02	ci left: 5.232361e-03	ci right 5.669645e-03	k: 2397	n:440000
Cons ci ratio: 1.026444e-02	ci left: 2.476729e-01	ci right 2.502304e-01	k: 109538	n:440000
KS ci ratio: 1.252083e-01	ci left: 2.083527e-03	ci right 2.364002e-03	k: 977	n:440000
MFN2   440000 perm   167 sec   (2633 perm/sec)   p_kst 2.220455e-03   p_cons 2.489500e-01   p_joint 5.447727e-03

Joint ci ratio: 7.988662e-02	ci left: 5.109540e-03	ci right 5.536868e-03	k: 2394	n:450000
Cons ci ratio: 1.015473e-02	ci left: 2.475041e-01	ci right 2.500325e-01	k: 111945	n:450000
KS ci ratio: 1.238854e-01	ci left: 2.082439e-03	ci right 2.359588e-03	k: 998	n:450000
MFN2   450000 perm   173 sec   (2607 perm/sec)   p_kst 2.217778e-03   p_cons 2.487667e-01   p_joint 5.320000e-03

Joint ci ratio: 7.999205e-02	ci left: 4.985667e-03	ci right 5.403211e-03	k: 2388	n:460000
Cons ci ratio: 1.004805e-02	ci left: 2.473580e-01	ci right 2.498582e-01	k: 114359	n:460000
KS ci ratio: 1.224234e-01	ci left: 2.087735e-03	ci right 2.362073e-03	k: 1022	n:460000
MFN2   460000 perm   178 sec   (2581 perm/sec)   p_kst 2.221739e-03   p_cons 2.486065e-01   p_joint 5.191304e-03

Joint ci ratio: 7.913544e-02	ci left: 4.988026e-03	ci right 5.401088e-03	k: 2440	n:470000
Cons ci ratio: 9.937533e-03	ci left: 2.474859e-01	ci right 2.499597e-01	k: 116899	n:470000
KS ci ratio: 1.211279e-01	ci left: 2.088698e-03	ci right 2.360050e-03	k: 1044	n:470000
MFN2   470000 perm   184 sec   (2556 perm/sec)   p_kst 2.221277e-03   p_cons 2.487213e-01   p_joint 5.191489e-03

Joint ci ratio: 8.413533e-02	ci left: 4.312609e-03	ci right 4.693410e-03	k: 2160	n:480000
Cons ci ratio: 9.832170e-03	ci left: 2.475483e-01	ci right 2.499964e-01	k: 119410	n:480000
KS ci ratio: 1.202119e-01	ci left: 2.077510e-03	ci right 2.345222e-03	k: 1060	n:480000
MFN2   480000 perm   190 sec   (2532 perm/sec)   p_kst 2.208333e-03   p_cons 2.487708e-01   p_joint 4.500000e-03

Joint ci ratio: 8.556267e-02	ci left: 4.082752e-03	ci right 4.449678e-03	k: 2089	n:490000
Cons ci ratio: 9.728601e-03	ci left: 2.476654e-01	ci right 2.500886e-01	k: 121949	n:490000
KS ci ratio: 1.188198e-01	ci left: 2.084608e-03	ci right 2.349905e-03	k: 1085	n:490000
MFN2   490000 perm   195 sec   (2508 perm/sec)   p_kst 2.214286e-03   p_cons 2.488755e-01   p_joint 4.263265e-03

Joint ci ratio: 8.623178e-02	ci left: 3.938460e-03	ci right 4.295324e-03	k: 2057	n:500000
Cons ci ratio: 9.628649e-03	ci left: 2.477619e-01	ci right 2.501610e-01	k: 124480	n:500000
KS ci ratio: 1.177409e-01	ci left: 2.081732e-03	ci right 2.344090e-03	k: 1105	n:500000
MFN2   500000 perm   201 sec   (2486 perm/sec)   p_kst 2.210000e-03   p_cons 2.489600e-01   p_joint 4.114000e-03

Joint ci ratio: 8.548775e-02	ci left: 3.930307e-03	ci right 4.283207e-03	k: 2093	n:510000
Cons ci ratio: 9.533364e-03	ci left: 2.477901e-01	ci right 2.501657e-01	k: 126978	n:510000
KS ci ratio: 1.166389e-01	ci left: 2.080883e-03	ci right 2.340510e-03	k: 1126	n:510000
MFN2   510000 perm   207 sec   (2463 perm/sec)   p_kst 2.207843e-03   p_cons 2.489765e-01   p_joint 4.103922e-03

Joint ci ratio: 8.524624e-02	ci left: 3.877304e-03	ci right 4.224412e-03	k: 2105	n:520000
Cons ci ratio: 9.439688e-03	ci left: 2.478635e-01	ci right 2.502162e-01	k: 129500	n:520000
KS ci ratio: 1.160750e-01	ci left: 2.061403e-03	ci right 2.317271e-03	k: 1137	n:520000
MFN2   520000 perm   213 sec   (2441 perm/sec)   p_kst 2.186538e-03   p_cons 2.490385e-01   p_joint 4.048077e-03

Joint ci ratio: 8.729131e-02	ci left: 3.625055e-03	ci right 3.957764e-03	k: 2008	n:530000
Cons ci ratio: 9.088725e-03	ci left: 2.586179e-01	ci right 2.609810e-01	k: 137693	n:530000
KS ci ratio: 1.150685e-01	ci left: 2.059153e-03	ci right 2.312376e-03	k: 1157	n:530000
MFN2   530000 perm   219 sec   (2418 perm/sec)   p_kst 2.183019e-03   p_cons 2.597981e-01   p_joint 3.788679e-03

Joint ci ratio: 8.927876e-02	ci left: 3.398542e-03	ci right 3.717932e-03	k: 1920	n:540000
Cons ci ratio: 9.002357e-03	ci left: 2.587066e-01	ci right 2.610479e-01	k: 140333	n:540000
KS ci ratio: 1.139908e-01	ci left: 2.060594e-03	ci right 2.311461e-03	k: 1179	n:540000
MFN2   540000 perm   225 sec   (2397 perm/sec)   p_kst 2.183333e-03   p_cons 2.598759e-01   p_joint 3.555556e-03

Joint ci ratio: 8.895695e-02	ci left: 3.361634e-03	ci right 3.676358e-03	k: 1934	n:550000
Cons ci ratio: 8.916929e-03	ci left: 2.588557e-01	ci right 2.611760e-01	k: 143008	n:550000
KS ci ratio: 1.131789e-01	ci left: 2.053160e-03	ci right 2.301222e-03	k: 1196	n:550000
MFN2   550000 perm   231 sec   (2376 perm/sec)   p_kst 2.174545e-03   p_cons 2.600145e-01   p_joint 3.516364e-03

Joint ci ratio: 8.836599e-02	ci left: 3.347003e-03	ci right 3.658168e-03	k: 1960	n:560000
Cons ci ratio: 8.835609e-03	ci left: 2.589246e-01	ci right 2.612243e-01	k: 145641	n:560000
KS ci ratio: 1.124306e-01	ci left: 2.044261e-03	ci right 2.289507e-03	k: 1212	n:560000
MFN2   560000 perm   238 sec   (2355 perm/sec)   p_kst 2.164286e-03   p_cons 2.600732e-01   p_joint 3.500000e-03

Joint ci ratio: 7.964825e-02	ci left: 4.062990e-03	ci right 4.401728e-03	k: 2411	n:570000
Cons ci ratio: 8.755077e-03	ci left: 2.590526e-01	ci right 2.613323e-01	k: 148309	n:570000
KS ci ratio: 1.114246e-01	ci left: 2.045913e-03	ci right 2.289016e-03	k: 1234	n:570000
MFN2   570000 perm   244 sec   (2335 perm/sec)   p_kst 2.164912e-03   p_cons 2.601912e-01   p_joint 4.229825e-03

Joint ci ratio: 8.023786e-02	ci left: 3.933790e-03	ci right 4.264297e-03	k: 2376	n:580000
Cons ci ratio: 8.679815e-03	ci left: 2.590385e-01	ci right 2.612984e-01	k: 150897	n:580000
KS ci ratio: 1.105334e-01	ci left: 2.044164e-03	ci right 2.284990e-03	k: 1254	n:580000
MFN2   580000 perm   251 sec   (2314 perm/sec)   p_kst 2.162069e-03   p_cons 2.601672e-01   p_joint 4.096552e-03

Joint ci ratio: 1.122515e-01	ci left: 1.946899e-03	ci right 2.180068e-03	k: 1216	n:590000
Cons ci ratio: 8.608547e-03	ci left: 2.589319e-01	ci right 2.611722e-01	k: 153430	n:590000
KS ci ratio: 1.130926e-01	ci left: 1.917249e-03	ci right 2.148702e-03	k: 1198	n:590000
MFN2   590000 perm   257 sec   (2294 perm/sec)   p_kst 2.030508e-03   p_cons 2.600508e-01   p_joint 2.061017e-03

Joint ci ratio: 1.118398e-01	ci left: 1.929029e-03	ci right 2.159154e-03	k: 1225	n:600000
Cons ci ratio: 8.535196e-03	ci left: 2.590003e-01	ci right 2.612220e-01	k: 156066	n:600000
KS ci ratio: 1.122534e-01	ci left: 1.914449e-03	ci right 2.143735e-03	k: 1216	n:600000
MFN2   600000 perm   264 sec   (2273 perm/sec)   p_kst 2.026667e-03   p_cons 2.601100e-01   p_joint 2.041667e-03

Joint ci ratio: 1.211589e-01	ci left: 1.609301e-03	ci right 1.818428e-03	k: 1044	n:610000
Cons ci ratio: 8.463040e-03	ci left: 2.590960e-01	ci right 2.612997e-01	k: 158720	n:610000
KS ci ratio: 1.113423e-01	ci left: 1.914935e-03	ci right 2.142295e-03	k: 1236	n:610000
MFN2   610000 perm   271 sec   (2254 perm/sec)   p_kst 2.026230e-03   p_cons 2.601967e-01   p_joint 1.711475e-03

Joint ci ratio: 9.460921e-02	ci left: 2.630618e-03	ci right 2.893417e-03	k: 1711	n:620000
Cons ci ratio: 8.394477e-03	ci left: 2.591066e-01	ci right 2.612924e-01	k: 161323	n:620000
KS ci ratio: 1.102335e-01	ci left: 1.923254e-03	ci right 2.149181e-03	k: 1261	n:620000
MFN2   620000 perm   277 sec   (2236 perm/sec)   p_kst 2.033871e-03   p_cons 2.601984e-01   p_joint 2.759677e-03

Joint ci ratio: 1.052925e-01	ci left: 2.079624e-03	ci right 2.312293e-03	k: 1382	n:630000
Cons ci ratio: 8.328137e-03	ci left: 2.590900e-01	ci right 2.612583e-01	k: 163909	n:630000
KS ci ratio: 1.090299e-01	ci left: 1.935953e-03	ci right 2.160729e-03	k: 1289	n:630000
MFN2   630000 perm   284 sec   (2216 perm/sec)   p_kst 2.046032e-03   p_cons 2.601730e-01   p_joint 2.193651e-03

Joint ci ratio: 1.043533e-01	ci left: 2.085169e-03	ci right 2.316249e-03	k: 1407	n:640000
Cons ci ratio: 8.260831e-03	ci left: 2.591909e-01	ci right 2.613425e-01	k: 166570	n:640000
KS ci ratio: 1.083188e-01	ci left: 1.931544e-03	ci right 2.154252e-03	k: 1306	n:640000
MFN2   640000 perm   291 sec   (2197 perm/sec)   p_kst 2.040625e-03   p_cons 2.602656e-01   p_joint 2.198437e-03

Joint ci ratio: 1.042438e-01	ci left: 2.057583e-03	ci right 2.285352e-03	k: 1410	n:650000
Cons ci ratio: 8.197422e-03	ci left: 2.591813e-01	ci right 2.613162e-01	k: 169161	n:650000
KS ci ratio: 1.072165e-01	ci left: 1.942247e-03	ci right 2.163767e-03	k: 1333	n:650000
MFN2   650000 perm   298 sec   (2179 perm/sec)   p_kst 2.050769e-03   p_cons 2.602477e-01   p_joint 2.169231e-03

Joint ci ratio: 1.014042e-01	ci left: 2.144508e-03	ci right 2.375048e-03	k: 1490	n:660000
Cons ci ratio: 8.137628e-03	ci left: 2.590692e-01	ci right 2.611875e-01	k: 171684	n:660000
KS ci ratio: 1.060301e-01	ci left: 1.957062e-03	ci right 2.177648e-03	k: 1363	n:660000
MFN2   660000 perm   305 sec   (2162 perm/sec)   p_kst 2.065152e-03   p_cons 2.601273e-01   p_joint 2.257576e-03

Joint ci ratio: 1.010668e-01	ci left: 2.127047e-03	ci right 2.354903e-03	k: 1500	n:670000
Cons ci ratio: 8.076775e-03	ci left: 2.590722e-01	ci right 2.611746e-01	k: 174282	n:670000
KS ci ratio: 1.054140e-01	ci left: 1.951101e-03	ci right 2.169658e-03	k: 1379	n:670000
MFN2   670000 perm   312 sec   (2145 perm/sec)   p_kst 2.058209e-03   p_cons 2.601224e-01   p_joint 2.238806e-03

Joint ci ratio: 1.009674e-01	ci left: 2.100065e-03	ci right 2.324797e-03	k: 1503	n:680000
Cons ci ratio: 8.015153e-03	ci left: 2.591766e-01	ci right 2.612637e-01	k: 176949	n:680000
KS ci ratio: 1.043229e-01	ci left: 1.963938e-03	ci right 2.181516e-03	k: 1408	n:680000
MFN2   680000 perm   320 sec   (2128 perm/sec)   p_kst 2.070588e-03   p_cons 2.602191e-01   p_joint 2.210294e-03

Joint ci ratio: 1.001712e-01	ci left: 2.103537e-03	ci right 2.326762e-03	k: 1527	n:690000
Cons ci ratio: 7.956836e-03	ci left: 2.591853e-01	ci right 2.612573e-01	k: 179552	n:690000
KS ci ratio: 1.034454e-01	ci left: 1.969354e-03	ci right 2.185585e-03	k: 1432	n:690000
MFN2   690000 perm   327 sec   (2112 perm/sec)   p_kst 2.075362e-03   p_cons 2.602203e-01   p_joint 2.213043e-03

Joint ci ratio: 9.932936e-02	ci left: 2.109703e-03	ci right 2.331591e-03	k: 1553	n:700000
Cons ci ratio: 7.898221e-03	ci left: 2.592695e-01	ci right 2.613268e-01	k: 182208	n:700000
KS ci ratio: 1.027311e-01	ci left: 1.969055e-03	ci right 2.183670e-03	k: 1452	n:700000
MFN2   700000 perm   334 sec   (2096 perm/sec)   p_kst 2.074286e-03   p_cons 2.602971e-01   p_joint 2.218571e-03

Joint ci ratio: 9.853970e-02	ci left: 2.114330e-03	ci right 2.334834e-03	k: 1578	n:710000
Cons ci ratio: 7.840481e-03	ci left: 2.593710e-01	ci right 2.614140e-01	k: 184878	n:710000
KS ci ratio: 1.020660e-01	ci left: 1.967397e-03	ci right 2.180360e-03	k: 1471	n:710000
MFN2   710000 perm   341 sec   (2079 perm/sec)   p_kst 2.071831e-03   p_cons 2.603915e-01   p_joint 2.222535e-03

Joint ci ratio: 7.960077e-02	ci left: 3.223285e-03	ci right 3.491847e-03	k: 2416	n:720000
Cons ci ratio: 8.008813e-03	ci left: 2.486645e-01	ci right 2.506653e-01	k: 179758	n:720000
KS ci ratio: 1.011422e-01	ci left: 1.976620e-03	ci right 2.188529e-03	k: 1498	n:720000
MFN2   720000 perm   349 sec   (2064 perm/sec)   p_kst 2.080556e-03   p_cons 2.496639e-01   p_joint 3.355556e-03

Joint ci ratio: 8.022102e-02	ci left: 3.129452e-03	ci right 3.392322e-03	k: 2379	n:730000
Cons ci ratio: 7.955853e-03	ci left: 2.485733e-01	ci right 2.505602e-01	k: 182183	n:730000
KS ci ratio: 1.004742e-01	ci left: 1.976249e-03	ci right 2.186637e-03	k: 1518	n:730000
MFN2   730000 perm   357 sec   (2046 perm/sec)   p_kst 2.079452e-03   p_cons 2.495658e-01   p_joint 3.258904e-03

Joint ci ratio: 7.970371e-02	ci left: 3.128216e-03	ci right 3.389210e-03	k: 2410	n:740000
Cons ci ratio: 7.899967e-03	ci left: 2.486723e-01	ci right 2.506459e-01	k: 184747	n:740000
KS ci ratio: 9.965718e-02	ci left: 1.982482e-03	ci right 2.191717e-03	k: 1543	n:740000
MFN2   740000 perm   364 sec   (2030 perm/sec)   p_kst 2.085135e-03   p_cons 2.496581e-01   p_joint 3.256757e-03

Outputting figure to mutsig2_images.part000000000105/MFN2.4_2342_740000_0.0020851_0.24966_0.0032568.png
                gene_name: MFN2
               theta_stop: 0.100 
                    nperm: 740000 
                     p_ks: 0.0021 
        ci_ks_bounds_left: 0.0020 
       ci_ks_bounds_right: 0.0022 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.0033 
     ci_joint_bounds_left: 0.0031 
    ci_joint_bounds_right: 0.0034 

Current progress: 28 percent done.
MFSD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.455968e-02	ci left: 7.091690e-01	ci right 7.269038e-01	k: 7181	n:10000
Cons ci ratio: 1.158000e-02	ci left: 9.143035e-01	ci right 9.250505e-01	k: 9198	n:10000
KS ci ratio: 5.047820e-02	ci left: 3.665931e-01	ci right 3.856792e-01	k: 3761	n:10000
MFSD5   10000 perm   2 sec   (5661 perm/sec)   p_kst 3.761000e-01   p_cons 9.198000e-01   p_joint 7.181000e-01

Outputting figure to mutsig2_images.part000000000105/MFSD5.4_1682_10000_0.3761_0.9198_0.7181.png
                gene_name: MFSD5
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 30 percent done.
MFSD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.364905e-02	ci left: 5.659423e-01	ci right 5.854136e-01	k: 5757	n:10000
Cons ci ratio: 7.406857e-02	ci left: 2.106310e-01	ci right 2.269331e-01	k: 2187	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
MFSD8   10000 perm   2 sec   (5747 perm/sec)   p_kst 1   p_cons 2.187000e-01   p_joint 5.757000e-01

Outputting figure to mutsig2_images.part000000000105/MFSD8.4_1605_10000_1_0.2187_0.5757.png
                gene_name: MFSD8
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 31 percent done.
MFSD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.970216e-02	ci left: 3.738555e-01	ci right 3.930125e-01	k: 3834	n:10000
Cons ci ratio: 6.698429e-02	ci left: 2.464796e-01	ci right 2.636633e-01	k: 2550	n:10000
KS ci ratio: 5.079150e-02	ci left: 3.637086e-01	ci right 3.827653e-01	k: 3732	n:10000
MFSD9   10000 perm   2 sec   (5878 perm/sec)   p_kst 3.732000e-01   p_cons 2.550000e-01   p_joint 3.834000e-01

Outputting figure to mutsig2_images.part000000000105/MFSD9.4_1449_10000_0.3732_0.255_0.3834.png
                gene_name: MFSD9
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 33 percent done.
MICALCL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.980736e-02	ci left: 2.914241e-01	ci right 3.094923e-01	k: 3004	n:10000
Cons ci ratio: 7.528098e-02	ci left: 2.052070e-01	ci right 2.213603e-01	k: 2132	n:10000
KS ci ratio: 5.644165e-02	ci left: 3.161198e-01	ci right 3.345821e-01	k: 3253	n:10000
MICALCL   10000 perm   2 sec   (5634 perm/sec)   p_kst 3.253000e-01   p_cons 2.132000e-01   p_joint 3.004000e-01

Outputting figure to mutsig2_images.part000000000105/MICALCL.4_2120_10000_0.3253_0.2132_0.3004.png
                gene_name: MICALCL
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 34 percent done.
MID1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.955063e-02	ci left: 6.280896e-01	ci right 6.470302e-01	k: 6376	n:10000
Cons ci ratio: 1.108910e-03	ci left: 9.985583e-01	ci right 9.997185e-01	k: 9993	n:10000
KS ci ratio: 5.173814e-02	ci left: 3.551569e-01	ci right 3.741220e-01	k: 3646	n:10000
MID1   10000 perm   2 sec   (5506 perm/sec)   p_kst 3.646000e-01   p_cons 9.993000e-01   p_joint 6.376000e-01

Outputting figure to mutsig2_images.part000000000105/MID1.4_2040_10000_0.3646_0.9993_0.6376.png
                gene_name: MID1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 36 percent done.
MIER2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.918087e-02	ci left: 6.339212e-01	ci right 6.527952e-01	k: 6434	n:10000
Cons ci ratio: 2.513066e-02	ci left: 6.996848e-01	ci right 7.175935e-01	k: 7087	n:10000
KS ci ratio: 4.903611e-02	ci left: 3.802244e-01	ci right 3.994398e-01	k: 3898	n:10000
MIER2   10000 perm   2 sec   (5921 perm/sec)   p_kst 3.898000e-01   p_cons 7.087000e-01   p_joint 6.434000e-01

Outputting figure to mutsig2_images.part000000000105/MIER2.4_1694_10000_0.3898_0.7087_0.6434.png
                gene_name: MIER2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 38 percent done.
MIF4GD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.256428e-01	ci left: 8.310086e-02	ci right 9.434008e-02	k: 886	n:10000
Cons ci ratio: 4.424278e-02	ci left: 4.299405e-01	ci right 4.494947e-01	k: 4397	n:10000
KS ci ratio: 1.958891e-01	ci left: 3.471871e-02	ci right 4.235312e-02	k: 384	n:10000
MIF4GD   10000 perm   2 sec   (6045 perm/sec)   p_kst 3.840000e-02   p_cons 4.397000e-01   p_joint 8.860000e-02

Joint ci ratio: 1.050830e-01	ci left: 6.162181e-02	ci right 6.850530e-02	k: 1300	n:20000
Cons ci ratio: 3.209028e-02	ci left: 4.203802e-01	ci right 4.341409e-01	k: 8545	n:20000
KS ci ratio: 1.417063e-01	ci left: 3.423328e-02	ci right 3.950247e-02	k: 736	n:20000
MIF4GD   20000 perm   4 sec   (5473 perm/sec)   p_kst 3.680000e-02   p_cons 4.272500e-01   p_joint 6.500000e-02

Joint ci ratio: 6.922360e-02	ci left: 9.321404e-02	ci right 9.993099e-02	k: 2896	n:30000
Cons ci ratio: 2.624616e-02	ci left: 4.208277e-01	ci right 4.320533e-01	k: 12793	n:30000
KS ci ratio: 1.142364e-01	ci left: 3.560529e-02	ci right 3.995148e-02	k: 1132	n:30000
MIF4GD   30000 perm   6 sec   (5224 perm/sec)   p_kst 3.773333e-02   p_cons 4.264333e-01   p_joint 9.653333e-02

Joint ci ratio: 5.719233e-02	ci left: 1.020861e-01	ci right 1.081213e-01	k: 4203	n:40000
Cons ci ratio: 2.265060e-02	ci left: 4.232938e-01	ci right 4.330166e-01	k: 17126	n:40000
KS ci ratio: 9.864961e-02	ci left: 3.609860e-02	ci right 3.986885e-02	k: 1518	n:40000
MIF4GD   40000 perm   8 sec   (5056 perm/sec)   p_kst 3.795000e-02   p_cons 4.281500e-01   p_joint 1.050750e-01

Outputting figure to mutsig2_images.part000000000105/MIF4GD.4_795_40000_0.03795_0.42815_0.10508.png
                gene_name: MIF4GD
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 39 percent done.
MFAP3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.640648e-01	ci left: 4.955445e-02	ci right 5.850759e-02	k: 539	n:10000
Cons ci ratio: 6.075972e-02	ci left: 2.848834e-01	ci right 3.028368e-01	k: 2938	n:10000
KS ci ratio: 1.767052e-01	ci left: 4.274287e-02	ci right 5.112360e-02	k: 468	n:10000
MFAP3L   10000 perm   2 sec   (6011 perm/sec)   p_kst 4.680000e-02   p_cons 2.938000e-01   p_joint 5.390000e-02

Joint ci ratio: 1.076271e-01	ci left: 5.884288e-02	ci right 6.558509e-02	k: 1243	n:20000
Cons ci ratio: 4.255334e-02	ci left: 2.915168e-01	ci right 3.042420e-01	k: 5957	n:20000
KS ci ratio: 1.233061e-01	ci left: 4.512682e-02	ci right 5.110543e-02	k: 961	n:20000
MFAP3L   20000 perm   4 sec   (5394 perm/sec)   p_kst 4.805000e-02   p_cons 2.978500e-01   p_joint 6.215000e-02

Joint ci ratio: 9.981082e-02	ci left: 4.645421e-02	ci right 5.136696e-02	k: 1466	n:30000
Cons ci ratio: 3.481682e-02	ci left: 2.918326e-01	ci right 3.022068e-01	k: 8910	n:30000
KS ci ratio: 1.013829e-01	ci left: 4.505525e-02	ci right 4.989954e-02	k: 1423	n:30000
MFAP3L   30000 perm   6 sec   (5140 perm/sec)   p_kst 4.743333e-02   p_cons 2.970000e-01   p_joint 4.886667e-02

Joint ci ratio: 8.847936e-02	ci left: 4.470170e-02	ci right 4.886442e-02	k: 1870	n:40000
Cons ci ratio: 2.992697e-02	ci left: 2.956607e-01	ci right 3.046684e-01	k: 12006	n:40000
KS ci ratio: 8.813400e-02	ci left: 4.504432e-02	ci right 4.922174e-02	k: 1884	n:40000
MFAP3L   40000 perm   8 sec   (4980 perm/sec)   p_kst 4.710000e-02   p_cons 3.001500e-01   p_joint 4.675000e-02

Outputting figure to mutsig2_images.part000000000105/MFAP3L.3_1238_40000_0.0471_0.30015_0.04675.png
                gene_name: MFAP3L
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.049 

Current progress: 41 percent done.
MFF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.854894e-02	ci left: 4.984503e-01	ci right 5.181449e-01	k: 5083	n:10000
Cons ci ratio: 1.568863e-03	ci left: 9.975272e-01	ci right 9.991602e-01	k: 9985	n:10000
KS ci ratio: 7.368076e-02	ci left: 2.124066e-01	ci right 2.287565e-01	k: 2205	n:10000
MFF   10000 perm   1 sec   (6731 perm/sec)   p_kst 2.205000e-01   p_cons 9.985000e-01   p_joint 5.083000e-01

Outputting figure to mutsig2_images.part000000000105/MFF.3_1065_10000_0.2205_0.9985_0.5083.png
                gene_name: MFF
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 43 percent done.
MFN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.101880e-02	ci left: 7.684076e-01	ci right 7.848309e-01	k: 7767	n:10000
KS ci ratio: 1.900490e-02	ci left: 8.018666e-01	ci right 8.173526e-01	k: 8097	n:10000
MFN1   10000 perm   2 sec   (5635 perm/sec)   p_kst 8.097000e-01   p_cons 7.767000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MFN1.3_2294_10000_0.8097_0.7767_1.png
                gene_name: MFN1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
MFSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.465850e-02	ci left: 2.079681e-01	ci right 2.241977e-01	k: 2160	n:10000
Cons ci ratio: 7.275060e-02	ci left: 2.167479e-01	ci right 2.332127e-01	k: 2249	n:10000
KS ci ratio: 7.707555e-02	ci left: 1.975185e-01	ci right 2.134534e-01	k: 2054	n:10000
MFSD1   10000 perm   2 sec   (5935 perm/sec)   p_kst 2.054000e-01   p_cons 2.249000e-01   p_joint 2.160000e-01

Outputting figure to mutsig2_images.part000000000105/MFSD1.3_1609_10000_0.2054_0.2249_0.216.png
                gene_name: MFSD1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 46 percent done.
MFSD2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.628775e-02	ci left: 3.173107e-01	ci right 3.357904e-01	k: 3265	n:10000
Cons ci ratio: 7.188542e-02	ci left: 2.208930e-01	ci right 2.374651e-01	k: 2291	n:10000
KS ci ratio: 6.250251e-02	ci left: 2.733932e-01	ci right 2.911338e-01	k: 2822	n:10000
MFSD2A   10000 perm   2 sec   (5965 perm/sec)   p_kst 2.822000e-01   p_cons 2.291000e-01   p_joint 3.265000e-01

Outputting figure to mutsig2_images.part000000000105/MFSD2A.3_1688_10000_0.2822_0.2291_0.3265.png
                gene_name: MFSD2A
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 48 percent done.
MGAT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.610910e-02	ci left: 3.187002e-01	ci right 3.372001e-01	k: 3279	n:10000
Cons ci ratio: 2.311446e-02	ci left: 7.333048e-01	ci right 7.505541e-01	k: 7420	n:10000
KS ci ratio: 5.884004e-02	ci left: 2.982644e-01	ci right 3.164479e-01	k: 3073	n:10000
MGAT5   10000 perm   2 sec   (5736 perm/sec)   p_kst 3.073000e-01   p_cons 7.420000e-01   p_joint 3.279000e-01

Outputting figure to mutsig2_images.part000000000105/MGAT5.3_2290_10000_0.3073_0.742_0.3279.png
                gene_name: MGAT5
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 49 percent done.
MIB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.563659e-02	ci left: 6.913143e-01	ci right 7.093688e-01	k: 7004	n:10000
Cons ci ratio: 2.872461e-02	ci left: 6.411625e-01	ci right 6.599498e-01	k: 6506	n:10000
KS ci ratio: 4.267076e-02	ci left: 4.477990e-01	ci right 4.674257e-01	k: 4576	n:10000
MIB1   10000 perm   2 sec   (5495 perm/sec)   p_kst 4.576000e-01   p_cons 6.506000e-01   p_joint 7.004000e-01

Outputting figure to mutsig2_images.part000000000105/MIB1.3_3105_10000_0.4576_0.6506_0.7004.png
                gene_name: MIB1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 51 percent done.
MICAL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.204644e-02	ci left: 7.512008e-01	ci right 7.680477e-01	k: 7597	n:10000
KS ci ratio: 2.181098e-02	ci left: 7.551466e-01	ci right 7.718996e-01	k: 7636	n:10000
MICAL3   10000 perm   2 sec   (4372 perm/sec)   p_kst 7.636000e-01   p_cons 7.597000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MICAL3.3_6870_10000_0.7636_0.7597_1.png
                gene_name: MICAL3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
MICALL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.302484e-02	ci left: 4.437074e-01	ci right 4.633197e-01	k: 4535	n:10000
Cons ci ratio: 1.219806e-01	ci left: 8.786290e-02	ci right 9.937509e-02	k: 935	n:10000
KS ci ratio: 2.617518e-02	ci left: 6.824434e-01	ci right 7.006449e-01	k: 6916	n:10000
MICALL1   10000 perm   2 sec   (5618 perm/sec)   p_kst 6.916000e-01   p_cons 9.350000e-02   p_joint 4.535000e-01

Joint ci ratio: 3.852480e-02	ci left: 3.344784e-01	ci right 3.476678e-01	k: 6821	n:20000
Cons ci ratio: 8.741912e-02	ci left: 8.734272e-02	ci right 9.537654e-02	k: 1826	n:20000
KS ci ratio: 1.875907e-02	ci left: 6.793653e-01	ci right 6.922806e-01	k: 13717	n:20000
MICALL1   20000 perm   4 sec   (5102 perm/sec)   p_kst 6.858500e-01   p_cons 9.130000e-02   p_joint 3.410500e-01

Outputting figure to mutsig2_images.part000000000105/MICALL1.3_2656_20000_0.68585_0.0913_0.34105.png
                gene_name: MICALL1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 54 percent done.
MICB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.440949e-02	ci left: 1.698592e-01	ci right 1.849292e-01	k: 1773	n:10000
Cons ci ratio: 4.122148e-02	ci left: 4.649712e-01	ci right 4.846435e-01	k: 4748	n:10000
KS ci ratio: 1.146253e-01	ci left: 9.866755e-02	ci right 1.107638e-01	k: 1046	n:10000
MICB   10000 perm   2 sec   (6079 perm/sec)   p_kst 1.046000e-01   p_cons 4.748000e-01   p_joint 1.773000e-01

Joint ci ratio: 6.780037e-02	ci left: 1.383233e-01	ci right 1.480806e-01	k: 2863	n:20000
Cons ci ratio: 2.886837e-02	ci left: 4.727046e-01	ci right 4.866013e-01	k: 9593	n:20000
KS ci ratio: 8.007495e-02	ci left: 1.026992e-01	ci right 1.113154e-01	k: 2139	n:20000
MICB   20000 perm   4 sec   (5474 perm/sec)   p_kst 1.069500e-01   p_cons 4.796500e-01   p_joint 1.431500e-01

Outputting figure to mutsig2_images.part000000000105/MICB.3_1176_20000_0.10695_0.47965_0.14315.png
                gene_name: MICB
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 56 percent done.
MID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.891436e-02	ci left: 6.381450e-01	ci right 6.569690e-01	k: 6476	n:10000
KS ci ratio: 1.418936e-02	ci left: 8.777662e-01	ci right 8.904090e-01	k: 8842	n:10000
MID2   10000 perm   2 sec   (5797 perm/sec)   p_kst 8.842000e-01   p_cons 6.476000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MID2.3_2248_10000_0.8842_0.6476_1.png
                gene_name: MID2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
MIER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.404318e-02	ci left: 5.602275e-01	ci right 5.797317e-01	k: 5700	n:10000
Cons ci ratio: 7.268807e-02	ci left: 2.170439e-01	ci right 2.335164e-01	k: 2252	n:10000
KS ci ratio: 5.972766e-03	ci left: 9.742942e-01	ci right 9.802233e-01	k: 9774	n:10000
MIER1   10000 perm   2 sec   (5492 perm/sec)   p_kst 9.774000e-01   p_cons 2.252000e-01   p_joint 5.700000e-01

Outputting figure to mutsig2_images.part000000000105/MIER1.3_1906_10000_0.9774_0.2252_0.57.png
                gene_name: MIER1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 59 percent done.
MIIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.247189e-02	ci left: 5.832952e-01	ci right 6.026506e-01	k: 5930	n:10000
Cons ci ratio: 4.922212e-02	ci left: 3.784330e-01	ci right 3.976323e-01	k: 3880	n:10000
KS ci ratio: 3.707269e-02	ci left: 5.179584e-01	ci right 5.376254e-01	k: 5278	n:10000
MIIP   10000 perm   2 sec   (6364 perm/sec)   p_kst 5.278000e-01   p_cons 3.880000e-01   p_joint 5.930000e-01

Outputting figure to mutsig2_images.part000000000105/MIIP.3_1203_10000_0.5278_0.388_0.593.png
                gene_name: MIIP
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 61 percent done.
MIOS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.658079e-02	ci left: 4.048206e-01	ci right 4.242292e-01	k: 4145	n:10000
Cons ci ratio: 2.330761e-02	ci left: 7.300714e-01	ci right 7.473894e-01	k: 7388	n:10000
KS ci ratio: 5.162669e-02	ci left: 3.561511e-01	ci right 3.751272e-01	k: 3656	n:10000
MIOS   10000 perm   2 sec   (5392 perm/sec)   p_kst 3.656000e-01   p_cons 7.388000e-01   p_joint 4.145000e-01

Outputting figure to mutsig2_images.part000000000105/MIOS.3_2668_10000_0.3656_0.7388_0.4145.png
                gene_name: MIOS
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 62 percent done.
MKL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.074454e-02	ci left: 6.094987e-01	ci right 6.286319e-01	k: 6191	n:10000
Cons ci ratio: 7.285505e-02	ci left: 2.162545e-01	ci right 2.327063e-01	k: 2244	n:10000
KS ci ratio: 1.394590e-02	ci left: 8.813485e-01	ci right 8.938247e-01	k: 8877	n:10000
MKL2   10000 perm   2 sec   (5393 perm/sec)   p_kst 8.877000e-01   p_cons 2.244000e-01   p_joint 6.191000e-01

Outputting figure to mutsig2_images.part000000000105/MKL2.3_3210_10000_0.8877_0.2244_0.6191.png
                gene_name: MKL2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 64 percent done.
MKNK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.055197e-01	ci left: 3.148396e-02	ci right 3.879009e-02	k: 350	n:10000
Cons ci ratio: 6.812237e-01	ci left: 2.189796e-03	ci right 4.514469e-03	k: 32	n:10000
KS ci ratio: 4.570908e-02	ci left: 4.139884e-01	ci right 4.334561e-01	k: 4237	n:10000
MKNK2   10000 perm   2 sec   (6078 perm/sec)   p_kst 4.237000e-01   p_cons 3.200000e-03   p_joint 3.500000e-02

Joint ci ratio: 2.690752e-01	ci left: 9.087199e-03	ci right 1.195778e-02	k: 209	n:20000
Cons ci ratio: 5.139616e-01	ci left: 2.159255e-03	ci right 3.690949e-03	k: 57	n:20000
KS ci ratio: 3.161300e-02	ci left: 4.277149e-01	ci right 4.415041e-01	k: 8692	n:20000
MKNK2   20000 perm   4 sec   (5439 perm/sec)   p_kst 4.346000e-01   p_cons 2.850000e-03   p_joint 1.045000e-02

Joint ci ratio: 1.765505e-01	ci left: 1.473800e-02	ci right 1.762346e-02	k: 484	n:30000
Cons ci ratio: 4.432679e-01	ci left: 2.026088e-03	ci right 3.206864e-03	k: 77	n:30000
KS ci ratio: 2.599379e-02	ci left: 4.255528e-01	ci right 4.367938e-01	k: 12935	n:30000
MKNK2   30000 perm   6 sec   (5195 perm/sec)   p_kst 4.311667e-01   p_cons 2.566667e-03   p_joint 1.613333e-02

Joint ci ratio: 1.086790e-01	ci left: 2.978556e-02	ci right 3.323290e-02	k: 1259	n:40000
Cons ci ratio: 3.092789e-01	ci left: 3.382116e-03	ci right 4.641571e-03	k: 159	n:40000
KS ci ratio: 2.255833e-02	ci left: 4.252909e-01	ci right 4.350193e-01	k: 17206	n:40000
MKNK2   40000 perm   8 sec   (5029 perm/sec)   p_kst 4.301500e-01   p_cons 3.975000e-03   p_joint 3.147500e-02

Joint ci ratio: 1.078095e-01	ci left: 2.436954e-02	ci right 2.716589e-02	k: 1287	n:50000
Cons ci ratio: 2.787349e-01	ci left: 3.391256e-03	ci right 4.507551e-03	k: 196	n:50000
KS ci ratio: 2.022849e-02	ci left: 4.245562e-01	ci right 4.332521e-01	k: 21445	n:50000
MKNK2   50000 perm   10 sec   (4910 perm/sec)   p_kst 4.289000e-01   p_cons 3.920000e-03   p_joint 2.574000e-02

Joint ci ratio: 1.139762e-01	ci left: 1.823034e-02	ci right 2.044983e-02	k: 1159	n:60000
Cons ci ratio: 2.541259e-01	ci left: 3.448285e-03	ci right 4.467286e-03	k: 236	n:60000
KS ci ratio: 1.844603e-02	ci left: 4.254678e-01	ci right 4.334057e-01	k: 25766	n:60000
MKNK2   60000 perm   12 sec   (4801 perm/sec)   p_kst 4.294333e-01   p_cons 3.933333e-03   p_joint 1.931667e-02

Joint ci ratio: 1.094786e-01	ci left: 1.700017e-02	ci right 1.898293e-02	k: 1258	n:70000
Cons ci ratio: 2.359184e-01	ci left: 3.465243e-03	ci right 4.405185e-03	k: 274	n:70000
KS ci ratio: 1.707047e-02	ci left: 4.259716e-01	ci right 4.333200e-01	k: 30075	n:70000
MKNK2   70000 perm   15 sec   (4706 perm/sec)   p_kst 4.296429e-01   p_cons 3.914286e-03   p_joint 1.797143e-02

Joint ci ratio: 1.012972e-01	ci left: 1.744340e-02	ci right 1.931676e-02	k: 1469	n:80000
Cons ci ratio: 2.197311e-01	ci left: 3.527170e-03	ci right 4.409402e-03	k: 316	n:80000
KS ci ratio: 1.594297e-02	ci left: 4.269778e-01	ci right 4.338523e-01	k: 34433	n:80000
MKNK2   80000 perm   17 sec   (4615 perm/sec)   p_kst 4.304125e-01   p_cons 3.950000e-03   p_joint 1.836250e-02

Joint ci ratio: 8.507791e-02	ci left: 2.206313e-02	ci right 2.403444e-02	k: 2073	n:90000
Cons ci ratio: 2.103339e-01	ci left: 3.440120e-03	ci right 4.259037e-03	k: 345	n:90000
KS ci ratio: 1.504966e-02	ci left: 4.265736e-01	ci right 4.330531e-01	k: 38683	n:90000
MKNK2   90000 perm   20 sec   (4524 perm/sec)   p_kst 4.298111e-01   p_cons 3.833333e-03   p_joint 2.303333e-02

Joint ci ratio: 9.549804e-02	ci left: 1.577809e-02	ci right 1.737013e-02	k: 1656	n:100000
Cons ci ratio: 1.996562e-01	ci left: 3.456615e-03	ci right 4.232600e-03	k: 383	n:100000
KS ci ratio: 1.427538e-02	ci left: 4.268087e-01	ci right 4.329553e-01	k: 42988	n:100000
MKNK2   100000 perm   22 sec   (4446 perm/sec)   p_kst 4.298800e-01   p_cons 3.830000e-03   p_joint 1.656000e-02

Joint ci ratio: 7.157323e-02	ci left: 2.559452e-02	ci right 2.750328e-02	k: 2919	n:110000
Cons ci ratio: 1.915982e-01	ci left: 3.427682e-03	ci right 4.162498e-03	k: 416	n:110000
KS ci ratio: 1.360698e-02	ci left: 4.270989e-01	ci right 4.329593e-01	k: 47303	n:110000
MKNK2   110000 perm   25 sec   (4367 perm/sec)   p_kst 4.300273e-01   p_cons 3.781818e-03   p_joint 2.653636e-02

Joint ci ratio: 6.812578e-02	ci left: 2.593451e-02	ci right 2.777178e-02	k: 3221	n:120000
Cons ci ratio: 1.859000e-01	ci left: 3.348459e-03	ci right 4.042533e-03	k: 442	n:120000
KS ci ratio: 1.312032e-02	ci left: 4.237577e-01	ci right 4.293625e-01	k: 51187	n:120000
MKNK2   120000 perm   28 sec   (4293 perm/sec)   p_kst 4.265583e-01   p_cons 3.683333e-03   p_joint 2.684167e-02

Joint ci ratio: 6.294494e-02	ci left: 2.805661e-02	ci right 2.988756e-02	k: 3765	n:130000
Cons ci ratio: 1.774814e-01	ci left: 3.406626e-03	ci right 4.077348e-03	k: 485	n:130000
KS ci ratio: 1.260533e-02	ci left: 4.238785e-01	ci right 4.292632e-01	k: 55454	n:130000
MKNK2   130000 perm   31 sec   (4222 perm/sec)   p_kst 4.265692e-01   p_cons 3.730769e-03   p_joint 2.896154e-02

Joint ci ratio: 6.329756e-02	ci left: 2.581962e-02	ci right 2.751435e-02	k: 3732	n:140000
Cons ci ratio: 1.710886e-01	ci left: 3.416056e-03	ci right 4.061909e-03	k: 522	n:140000
KS ci ratio: 1.215172e-02	ci left: 4.237788e-01	ci right 4.289671e-01	k: 59692	n:140000
MKNK2   140000 perm   34 sec   (4155 perm/sec)   p_kst 4.263714e-01   p_cons 3.728571e-03   p_joint 2.665714e-02

Joint ci ratio: 5.777793e-02	ci left: 2.891242e-02	ci right 3.063916e-02	k: 4465	n:150000
Cons ci ratio: 1.653402e-01	ci left: 3.424604e-03	ci right 4.048154e-03	k: 559	n:150000
KS ci ratio: 1.172334e-02	ci left: 4.245482e-01	ci right 4.295613e-01	k: 64058	n:150000
MKNK2   150000 perm   37 sec   (4089 perm/sec)   p_kst 4.270533e-01   p_cons 3.726667e-03   p_joint 2.976667e-02

Joint ci ratio: 5.976799e-02	ci left: 2.539817e-02	ci right 2.696906e-02	k: 4188	n:160000
Cons ci ratio: 1.593332e-01	ci left: 3.468407e-03	ci right 4.074793e-03	k: 602	n:160000
KS ci ratio: 1.135464e-02	ci left: 4.244746e-01	ci right 4.293281e-01	k: 68304	n:160000
MKNK2   160000 perm   40 sec   (4025 perm/sec)   p_kst 4.269000e-01   p_cons 3.762500e-03   p_joint 2.617500e-02

Joint ci ratio: 6.276615e-02	ci left: 2.172494e-02	ci right 2.313847e-02	k: 3812	n:170000
Cons ci ratio: 1.547806e-01	ci left: 3.467825e-03	ci right 4.055180e-03	k: 638	n:170000
KS ci ratio: 1.101933e-02	ci left: 4.243825e-01	ci right 4.290906e-01	k: 72545	n:170000
MKNK2   170000 perm   43 sec   (3964 perm/sec)   p_kst 4.267353e-01   p_cons 3.752941e-03   p_joint 2.242353e-02

Joint ci ratio: 6.100775e-02	ci left: 2.173772e-02	ci right 2.311106e-02	k: 4035	n:180000
Cons ci ratio: 1.500405e-01	ci left: 3.494264e-03	ci right 4.066345e-03	k: 679	n:180000
KS ci ratio: 1.070454e-02	ci left: 4.246467e-01	ci right 4.292223e-01	k: 76848	n:180000
MKNK2   180000 perm   46 sec   (3903 perm/sec)   p_kst 4.269333e-01   p_cons 3.772222e-03   p_joint 2.241667e-02

Joint ci ratio: 6.145025e-02	ci left: 2.032367e-02	ci right 2.161731e-02	k: 3983	n:190000
Cons ci ratio: 1.464260e-01	ci left: 3.482664e-03	ci right 4.037909e-03	k: 713	n:190000
KS ci ratio: 1.041527e-02	ci left: 4.248848e-01	ci right 4.293385e-01	k: 81151	n:190000
MKNK2   190000 perm   49 sec   (3844 perm/sec)   p_kst 4.271105e-01   p_cons 3.752632e-03   p_joint 2.096316e-02

Joint ci ratio: 6.002370e-02	ci left: 2.025289e-02	ci right 2.151105e-02	k: 4175	n:200000
Cons ci ratio: 1.431568e-01	ci left: 3.467552e-03	ci right 4.006989e-03	k: 746	n:200000
KS ci ratio: 1.015291e-02	ci left: 4.248757e-01	ci right 4.292164e-01	k: 85409	n:200000
MKNK2   200000 perm   53 sec   (3789 perm/sec)   p_kst 4.270450e-01   p_cons 3.730000e-03   p_joint 2.087500e-02

Joint ci ratio: 5.867150e-02	ci left: 2.020324e-02	ci right 2.142909e-02	k: 4370	n:210000
Cons ci ratio: 1.391161e-01	ci left: 3.504561e-03	ci right 4.033091e-03	k: 790	n:210000
KS ci ratio: 9.913772e-03	ci left: 4.246546e-01	ci right 4.288902e-01	k: 89622	n:210000
MKNK2   210000 perm   56 sec   (3733 perm/sec)   p_kst 4.267714e-01   p_cons 3.761905e-03   p_joint 2.080952e-02

Joint ci ratio: 5.863828e-02	ci left: 1.932496e-02	ci right 2.049683e-02	k: 4379	n:220000
Cons ci ratio: 1.353179e-01	ci left: 3.542792e-03	ci right 4.061326e-03	k: 835	n:220000
KS ci ratio: 9.685007e-03	ci left: 4.247455e-01	ci right 4.288837e-01	k: 93899	n:220000
MKNK2   220000 perm   60 sec   (3680 perm/sec)   p_kst 4.268136e-01   p_cons 3.795455e-03   p_joint 1.990455e-02

Joint ci ratio: 5.369496e-02	ci left: 2.203936e-02	ci right 2.325967e-02	k: 5208	n:230000
Cons ci ratio: 1.324196e-01	ci left: 3.544239e-03	ci right 4.051001e-03	k: 872	n:230000
KS ci ratio: 9.469867e-03	ci left: 4.249077e-01	ci right 4.289550e-01	k: 98194	n:230000
MKNK2   230000 perm   63 sec   (3625 perm/sec)   p_kst 4.269304e-01   p_cons 3.791304e-03   p_joint 2.264348e-02

Joint ci ratio: 5.339695e-02	ci left: 2.137573e-02	ci right 2.255252e-02	k: 5270	n:240000
Cons ci ratio: 1.296284e-01	ci left: 3.549707e-03	ci right 4.045728e-03	k: 910	n:240000
KS ci ratio: 9.267743e-03	ci left: 4.250948e-01	ci right 4.290569e-01	k: 102498	n:240000
MKNK2   240000 perm   67 sec   (3576 perm/sec)   p_kst 4.270750e-01   p_cons 3.791667e-03   p_joint 2.195833e-02

Joint ci ratio: 5.248758e-02	ci left: 2.125086e-02	ci right 2.240026e-02	k: 5455	n:250000
Cons ci ratio: 1.273438e-01	ci left: 3.535474e-03	ci right 4.020142e-03	k: 943	n:250000
KS ci ratio: 9.080036e-03	ci left: 4.251598e-01	ci right 4.290419e-01	k: 106775	n:250000
MKNK2   250000 perm   71 sec   (3528 perm/sec)   p_kst 4.271000e-01   p_cons 3.772000e-03   p_joint 2.182000e-02

Joint ci ratio: 5.237787e-02	ci left: 2.053581e-02	ci right 2.164413e-02	k: 5482	n:260000
Cons ci ratio: 1.254986e-01	ci left: 3.503777e-03	ci right 3.976622e-03	k: 971	n:260000
KS ci ratio: 8.900702e-03	ci left: 4.253628e-01	ci right 4.291696e-01	k: 111089	n:260000
MKNK2   260000 perm   75 sec   (3472 perm/sec)   p_kst 4.272654e-01   p_cons 3.734615e-03   p_joint 2.108462e-02

Joint ci ratio: 5.455564e-02	ci left: 1.825082e-02	ci right 1.927806e-02	k: 5065	n:270000
Cons ci ratio: 1.232989e-01	ci left: 3.499603e-03	ci right 3.963002e-03	k: 1006	n:270000
KS ci ratio: 8.729607e-03	ci left: 4.256625e-01	ci right 4.293983e-01	k: 115433	n:270000
MKNK2   270000 perm   79 sec   (3426 perm/sec)   p_kst 4.275296e-01   p_cons 3.725926e-03   p_joint 1.875926e-02

Joint ci ratio: 4.827866e-02	ci left: 2.244792e-02	ci right 2.356199e-02	k: 6440	n:280000
Cons ci ratio: 1.201735e-01	ci left: 3.558146e-03	ci right 4.016505e-03	k: 1059	n:280000
KS ci ratio: 8.574201e-03	ci left: 4.255880e-01	ci right 4.292563e-01	k: 119678	n:280000
MKNK2   280000 perm   83 sec   (3384 perm/sec)   p_kst 4.274214e-01   p_cons 3.782143e-03   p_joint 2.300000e-02

Joint ci ratio: 4.775140e-02	ci left: 2.216777e-02	ci right 2.325559e-02	k: 6585	n:290000
Cons ci ratio: 1.178604e-01	ci left: 3.575969e-03	ci right 4.027140e-03	k: 1101	n:290000
KS ci ratio: 8.425741e-03	ci left: 4.255813e-01	ci right 4.291857e-01	k: 123941	n:290000
MKNK2   290000 perm   87 sec   (3341 perm/sec)   p_kst 4.273828e-01   p_cons 3.796552e-03   p_joint 2.270690e-02

Joint ci ratio: 4.680526e-02	ci left: 2.231165e-02	ci right 2.338426e-02	k: 6853	n:300000
Cons ci ratio: 1.159304e-01	ci left: 3.576497e-03	ci right 4.019840e-03	k: 1138	n:300000
KS ci ratio: 8.287782e-03	ci left: 4.253956e-01	ci right 4.289391e-01	k: 128150	n:300000
MKNK2   300000 perm   91 sec   (3292 perm/sec)   p_kst 4.271667e-01   p_cons 3.793333e-03   p_joint 2.284333e-02

Joint ci ratio: 4.607234e-02	ci left: 2.229335e-02	ci right 2.334785e-02	k: 7073	n:310000
Cons ci ratio: 1.139951e-01	ci left: 3.583316e-03	ci right 4.019589e-03	k: 1177	n:310000
KS ci ratio: 8.151921e-03	ci left: 4.254900e-01	ci right 4.289759e-01	k: 132442	n:310000
MKNK2   310000 perm   96 sec   (3243 perm/sec)   p_kst 4.272323e-01   p_cons 3.796774e-03   p_joint 2.281613e-02

Joint ci ratio: 4.895025e-02	ci left: 1.916573e-02	ci right 2.013050e-02	k: 6286	n:320000
Cons ci ratio: 1.121072e-01	ci left: 3.592803e-03	ci right 4.022509e-03	k: 1217	n:320000
KS ci ratio: 8.022735e-03	ci left: 4.255664e-01	ci right 4.289974e-01	k: 136730	n:320000
MKNK2   320000 perm   100 sec   (3200 perm/sec)   p_kst 4.272813e-01   p_cons 3.803125e-03   p_joint 1.964375e-02

Joint ci ratio: 4.838386e-02	ci left: 1.903094e-02	ci right 1.997753e-02	k: 6435	n:330000
Cons ci ratio: 1.103102e-01	ci left: 3.601772e-03	ci right 4.025197e-03	k: 1257	n:330000
KS ci ratio: 7.898719e-03	ci left: 4.256870e-01	ci right 4.290657e-01	k: 141034	n:330000
MKNK2   330000 perm   104 sec   (3162 perm/sec)   p_kst 4.273758e-01   p_cons 3.809091e-03   p_joint 1.950000e-02

Joint ci ratio: 5.258363e-02	ci left: 1.565928e-02	ci right 1.650782e-02	k: 5467	n:340000
Cons ci ratio: 1.085130e-01	ci left: 3.615988e-03	ci right 4.033715e-03	k: 1299	n:340000
KS ci ratio: 7.780328e-03	ci left: 4.257980e-01	ci right 4.291267e-01	k: 145337	n:340000
MKNK2   340000 perm   109 sec   (3126 perm/sec)   p_kst 4.274618e-01   p_cons 3.820588e-03   p_joint 1.607941e-02

Joint ci ratio: 5.215675e-02	ci left: 1.546843e-02	ci right 1.629962e-02	k: 5558	n:350000
Cons ci ratio: 1.069210e-01	ci left: 3.621101e-03	ci right 4.032895e-03	k: 1338	n:350000
KS ci ratio: 7.670643e-03	ci left: 4.256774e-01	ci right 4.289580e-01	k: 149561	n:350000
MKNK2   350000 perm   113 sec   (3091 perm/sec)   p_kst 4.273171e-01   p_cons 3.822857e-03   p_joint 1.588000e-02

Joint ci ratio: 5.140364e-02	ci left: 1.548841e-02	ci right 1.630830e-02	k: 5722	n:360000
Cons ci ratio: 1.049393e-01	ci left: 3.658432e-03	ci right 4.066285e-03	k: 1389	n:360000
KS ci ratio: 7.565511e-03	ci left: 4.255611e-01	ci right 4.287956e-01	k: 153784	n:360000
MKNK2   360000 perm   118 sec   (3056 perm/sec)   p_kst 4.271778e-01   p_cons 3.858333e-03   p_joint 1.589444e-02

Joint ci ratio: 4.583686e-02	ci left: 1.893929e-02	ci right 1.983042e-02	k: 7171	n:370000
Cons ci ratio: 1.031357e-01	ci left: 3.688545e-03	ci right 4.092259e-03	k: 1438	n:370000
KS ci ratio: 7.460711e-03	ci left: 4.257053e-01	ci right 4.288959e-01	k: 158101	n:370000
MKNK2   370000 perm   122 sec   (3022 perm/sec)   p_kst 4.273000e-01   p_cons 3.886486e-03   p_joint 1.938108e-02

Joint ci ratio: 4.257602e-02	ci left: 2.135626e-02	ci right 2.228789e-02	k: 8291	n:380000
Cons ci ratio: 1.015591e-01	ci left: 3.706869e-03	ci right 4.106017e-03	k: 1483	n:380000
KS ci ratio: 7.360901e-03	ci left: 4.257922e-01	ci right 4.289405e-01	k: 162399	n:380000
MKNK2   380000 perm   127 sec   (2989 perm/sec)   p_kst 4.273658e-01   p_cons 3.902632e-03   p_joint 2.181842e-02

Joint ci ratio: 4.235652e-02	ci left: 2.103437e-02	ci right 2.194711e-02	k: 8380	n:390000
Cons ci ratio: 9.995429e-02	ci left: 3.731799e-03	ci right 4.126910e-03	k: 1531	n:390000
KS ci ratio: 7.266591e-03	ci left: 4.257672e-01	ci right 4.288749e-01	k: 166655	n:390000
MKNK2   390000 perm   132 sec   (2957 perm/sec)   p_kst 4.273205e-01   p_cons 3.925641e-03   p_joint 2.148718e-02

Outputting figure to mutsig2_images.part000000000105/MKNK2.3_1545_390000_0.42732_0.0039256_0.021487.png
                gene_name: MKNK2
               theta_stop: 0.100 
                    nperm: 390000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.0039 
      ci_cons_bounds_left: 0.0037 
     ci_cons_bounds_right: 0.0041 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.022 

Current progress: 66 percent done.
MKRN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.763529e-02	ci left: 8.242208e-01	ci right 8.389855e-01	k: 8317	n:10000
Cons ci ratio: 2.440207e-02	ci left: 7.117931e-01	ci right 7.294782e-01	k: 7207	n:10000
KS ci ratio: 2.545961e-02	ci left: 6.942385e-01	ci right 7.122429e-01	k: 7033	n:10000
MKRN1   10000 perm   2 sec   (6007 perm/sec)   p_kst 7.033000e-01   p_cons 7.207000e-01   p_joint 8.317000e-01

Outputting figure to mutsig2_images.part000000000105/MKRN1.3_1485_10000_0.7033_0.7207_0.8317.png
                gene_name: MKRN1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 67 percent done.
MFGE8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.024168e-02	ci left: 7.813762e-01	ci right 7.974549e-01	k: 7895	n:10000
Cons ci ratio: 3.209660e-02	ci left: 5.889150e-01	ci right 6.082275e-01	k: 5986	n:10000
KS ci ratio: 3.637945e-02	ci left: 5.273677e-01	ci right 5.470106e-01	k: 5372	n:10000
MFGE8   10000 perm   2 sec   (6419 perm/sec)   p_kst 5.372000e-01   p_cons 5.986000e-01   p_joint 7.895000e-01

Outputting figure to mutsig2_images.part000000000105/MFGE8.2_1196_10000_0.5372_0.5986_0.7895.png
                gene_name: MFGE8
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 69 percent done.
MFI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.452959e-01	ci left: 2.184098e-02	ci right 2.803999e-02	k: 248	n:10000
Cons ci ratio: 4.208622e-01	ci left: 6.794980e-03	ci right 1.049980e-02	k: 85	n:10000
KS ci ratio: 6.084766e-02	ci left: 2.842889e-01	ci right 3.022316e-01	k: 2932	n:10000
MFI2   10000 perm   2 sec   (5840 perm/sec)   p_kst 2.932000e-01   p_cons 8.500000e-03   p_joint 2.480000e-02

Joint ci ratio: 3.086535e-01	ci left: 6.766163e-03	ci right 9.280034e-03	k: 159	n:20000
Cons ci ratio: 3.106165e-01	ci left: 6.673885e-03	ci right 9.172365e-03	k: 157	n:20000
KS ci ratio: 4.310394e-02	ci left: 2.862009e-01	ci right 2.988595e-01	k: 5850	n:20000
MFI2   20000 perm   4 sec   (5266 perm/sec)   p_kst 2.925000e-01   p_cons 7.850000e-03   p_joint 7.950000e-03

Joint ci ratio: 2.663777e-01	ci left: 6.212330e-03	ci right 8.151619e-03	k: 214	n:30000
Cons ci ratio: 2.552529e-01	ci left: 6.804529e-03	ci right 8.825872e-03	k: 233	n:30000
KS ci ratio: 3.543239e-02	ci left: 2.846039e-01	ci right 2.949035e-01	k: 8692	n:30000
MFI2   30000 perm   6 sec   (5037 perm/sec)   p_kst 2.897333e-01   p_cons 7.766667e-03   p_joint 7.133333e-03

Joint ci ratio: 1.925979e-01	ci left: 9.262315e-03	ci right 1.125974e-02	k: 409	n:40000
Cons ci ratio: 2.175693e-01	ci left: 7.174001e-03	ci right 8.948532e-03	k: 321	n:40000
KS ci ratio: 3.067171e-02	ci left: 2.854814e-01	ci right 2.943991e-01	k: 11597	n:40000
MFI2   40000 perm   8 sec   (4885 perm/sec)   p_kst 2.899250e-01   p_cons 8.025000e-03   p_joint 1.022500e-02

Joint ci ratio: 1.495210e-01	ci left: 1.254531e-02	ci right 1.459174e-02	k: 677	n:50000
Cons ci ratio: 1.939940e-01	ci left: 7.313959e-03	ci right 8.903947e-03	k: 404	n:50000
KS ci ratio: 2.741964e-02	ci left: 2.861644e-01	ci right 2.941400e-01	k: 14507	n:50000
MFI2   50000 perm   10 sec   (4765 perm/sec)   p_kst 2.901400e-01   p_cons 8.080000e-03   p_joint 1.354000e-02

Joint ci ratio: 1.346271e-01	ci left: 1.299456e-02	ci right 1.488622e-02	k: 835	n:60000
Cons ci ratio: 1.769083e-01	ci left: 7.398325e-03	ci right 8.849858e-03	k: 486	n:60000
KS ci ratio: 2.503830e-02	ci left: 2.863877e-01	ci right 2.936659e-01	k: 17401	n:60000
MFI2   60000 perm   13 sec   (4661 perm/sec)   p_kst 2.900167e-01   p_cons 8.100000e-03   p_joint 1.391667e-02

Joint ci ratio: 1.525653e-01	ci left: 8.629675e-03	ci right 1.006858e-02	k: 653	n:70000
Cons ci ratio: 1.630876e-01	ci left: 7.517827e-03	ci right 8.866275e-03	k: 572	n:70000
KS ci ratio: 2.319250e-02	ci left: 2.864551e-01	ci right 2.931909e-01	k: 20287	n:70000
MFI2   70000 perm   15 sec   (4567 perm/sec)   p_kst 2.898143e-01   p_cons 8.171429e-03   p_joint 9.328571e-03

Joint ci ratio: 1.130274e-01	ci left: 1.397463e-02	ci right 1.566082e-02	k: 1184	n:80000
Cons ci ratio: 1.520703e-01	ci left: 7.610775e-03	ci right 8.875277e-03	k: 658	n:80000
KS ci ratio: 2.173173e-02	ci left: 2.859724e-01	ci right 2.922679e-01	k: 23129	n:80000
MFI2   80000 perm   18 sec   (4477 perm/sec)   p_kst 2.891125e-01   p_cons 8.225000e-03   p_joint 1.480000e-02

Joint ci ratio: 1.154134e-01	ci left: 1.192464e-02	ci right 1.339590e-02	k: 1138	n:90000
Cons ci ratio: 1.437036e-01	ci left: 7.610447e-03	ci right 8.799357e-03	k: 737	n:90000
KS ci ratio: 2.052229e-02	ci left: 2.854859e-01	ci right 2.914166e-01	k: 25960	n:90000
MFI2   90000 perm   20 sec   (4395 perm/sec)   p_kst 2.884444e-01   p_cons 8.188889e-03   p_joint 1.264444e-02

Joint ci ratio: 9.647961e-02	ci left: 1.545589e-02	ci right 1.703235e-02	k: 1623	n:100000
Cons ci ratio: 1.349261e-01	ci left: 7.804972e-03	ci right 8.943819e-03	k: 836	n:100000
KS ci ratio: 1.945094e-02	ci left: 2.860221e-01	ci right 2.916501e-01	k: 28883	n:100000
MFI2   100000 perm   23 sec   (4314 perm/sec)   p_kst 2.888300e-01   p_cons 8.360000e-03   p_joint 1.623000e-02

Joint ci ratio: 1.118367e-01	ci left: 1.042735e-02	ci right 1.167136e-02	k: 1214	n:110000
Cons ci ratio: 1.291930e-01	ci left: 7.763507e-03	ci right 8.844476e-03	k: 912	n:110000
KS ci ratio: 1.854714e-02	ci left: 2.861228e-01	ci right 2.914883e-01	k: 31768	n:110000
MFI2   110000 perm   26 sec   (4236 perm/sec)   p_kst 2.888000e-01   p_cons 8.290909e-03   p_joint 1.103636e-02

Joint ci ratio: 9.016067e-02	ci left: 1.480863e-02	ci right 1.621492e-02	k: 1860	n:120000
Cons ci ratio: 1.236929e-01	ci left: 7.786348e-03	ci right 8.820959e-03	k: 995	n:120000
KS ci ratio: 1.774533e-02	ci left: 2.865193e-01	ci right 2.916575e-01	k: 34690	n:120000
MFI2   120000 perm   29 sec   (4165 perm/sec)   p_kst 2.890833e-01   p_cons 8.291667e-03   p_joint 1.550000e-02

Joint ci ratio: 8.757901e-02	ci left: 1.451180e-02	ci right 1.584841e-02	k: 1972	n:130000
Cons ci ratio: 1.191749e-01	ci left: 7.761710e-03	ci right 8.752720e-03	k: 1072	n:130000
KS ci ratio: 1.702556e-02	ci left: 2.871890e-01	ci right 2.921281e-01	k: 37655	n:130000
MFI2   130000 perm   32 sec   (4097 perm/sec)   p_kst 2.896538e-01   p_cons 8.246154e-03   p_joint 1.516923e-02

Joint ci ratio: 8.234656e-02	ci left: 1.527222e-02	ci right 1.659080e-02	k: 2229	n:140000
Cons ci ratio: 1.148668e-01	ci left: 7.775877e-03	ci right 8.730372e-03	k: 1154	n:140000
KS ci ratio: 1.640584e-02	ci left: 2.872890e-01	ci right 2.920483e-01	k: 40553	n:140000
MFI2   140000 perm   35 sec   (4032 perm/sec)   p_kst 2.896643e-01   p_cons 8.242857e-03   p_joint 1.592143e-02

Joint ci ratio: 6.896158e-02	ci left: 2.035897e-02	ci right 2.181962e-02	k: 3162	n:150000
Cons ci ratio: 1.113126e-01	ci left: 7.743336e-03	ci right 8.662493e-03	k: 1229	n:150000
KS ci ratio: 1.585307e-02	ci left: 2.872788e-01	ci right 2.918760e-01	k: 43436	n:150000
MFI2   150000 perm   38 sec   (3971 perm/sec)   p_kst 2.895733e-01   p_cons 8.193333e-03   p_joint 2.108000e-02

Joint ci ratio: 6.318955e-02	ci left: 2.274479e-02	ci right 2.423504e-02	k: 3757	n:160000
Cons ci ratio: 1.082783e-01	ci left: 7.684850e-03	ci right 8.570613e-03	k: 1299	n:160000
KS ci ratio: 1.533588e-02	ci left: 2.877212e-01	ci right 2.921739e-01	k: 46391	n:160000
MFI2   160000 perm   41 sec   (3909 perm/sec)   p_kst 2.899438e-01   p_cons 8.118750e-03   p_joint 2.348125e-02

Joint ci ratio: 4.838775e-02	ci left: 3.627045e-02	ci right 3.807479e-02	k: 6318	n:170000
Cons ci ratio: 1.050167e-01	ci left: 7.702291e-03	ci right 8.561669e-03	k: 1381	n:170000
KS ci ratio: 1.485920e-02	ci left: 2.883073e-01	ci right 2.926292e-01	k: 49379	n:170000
MFI2   170000 perm   44 sec   (3851 perm/sec)   p_kst 2.904647e-01   p_cons 8.123529e-03   p_joint 3.716471e-02

Joint ci ratio: 4.708553e-02	ci left: 3.620407e-02	ci right 3.795532e-02	k: 6673	n:180000
Cons ci ratio: 1.016835e-01	ci left: 7.772301e-03	ci right 8.610322e-03	k: 1473	n:180000
KS ci ratio: 1.443504e-02	ci left: 2.885253e-01	ci right 2.927259e-01	k: 52312	n:180000
MFI2   180000 perm   47 sec   (3797 perm/sec)   p_kst 2.906222e-01   p_cons 8.183333e-03   p_joint 3.707222e-02

Joint ci ratio: 4.568435e-02	ci left: 3.645237e-02	ci right 3.816178e-02	k: 7087	n:190000
Cons ci ratio: 9.845881e-02	ci left: 7.866132e-03	ci right 8.685819e-03	k: 1571	n:190000
KS ci ratio: 1.405440e-02	ci left: 2.884540e-01	ci right 2.925419e-01	k: 55194	n:190000
MFI2   190000 perm   51 sec   (3745 perm/sec)   p_kst 2.904947e-01   p_cons 8.268421e-03   p_joint 3.730000e-02

Outputting figure to mutsig2_images.part000000000105/MFI2.2_2482_190000_0.29049_0.0082684_0.0373.png
                gene_name: MFI2
               theta_stop: 0.098 
                    nperm: 190000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.0083 
      ci_cons_bounds_left: 0.0079 
     ci_cons_bounds_right: 0.0087 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.038 

Current progress: 70 percent done.
MFRP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.887534e-02	ci left: 8.039987e-01	ci right 8.194193e-01	k: 8118	n:10000
KS ci ratio: 3.455280e-02	ci left: 5.529105e-01	ci right 5.724530e-01	k: 5627	n:10000
MFRP   10000 perm   2 sec   (6135 perm/sec)   p_kst 5.627000e-01   p_cons 8.118000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MFRP.2_1792_10000_0.5627_0.8118_1.png
                gene_name: MFRP
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
MFSD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.703343e-03	ci left: 9.590082e-01	ci right 9.665191e-01	k: 9629	n:10000
Cons ci ratio: 3.508942e-02	ci left: 5.452950e-01	ci right 5.648729e-01	k: 5551	n:10000
KS ci ratio: 2.847238e-02	ci left: 6.451864e-01	ci right 6.639235e-01	k: 6546	n:10000
MFSD11   10000 perm   2 sec   (6226 perm/sec)   p_kst 6.546000e-01   p_cons 5.551000e-01   p_joint 9.629000e-01

Outputting figure to mutsig2_images.part000000000105/MFSD11.2_1402_10000_0.6546_0.5551_0.9629.png
                gene_name: MFSD11
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 74 percent done.
MFSD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.446164e-02	ci left: 5.542133e-01	ci right 5.737494e-01	k: 5640	n:10000
KS ci ratio: 3.179695e-02	ci left: 5.934319e-01	ci right 6.127080e-01	k: 6031	n:10000
MFSD4   10000 perm   2 sec   (6288 perm/sec)   p_kst 6.031000e-01   p_cons 5.640000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MFSD4.2_1585_10000_0.6031_0.564_1.png
                gene_name: MFSD4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
MFSD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.821783e-02	ci left: 8.147659e-01	ci right 8.298458e-01	k: 8224	n:10000
KS ci ratio: 7.607495e-02	ci left: 2.017565e-01	ci right 2.178129e-01	k: 2097	n:10000
MFSD6   10000 perm   2 sec   (5790 perm/sec)   p_kst 2.097000e-01   p_cons 8.224000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MFSD6.2_2400_10000_0.2097_0.8224_1.png
                gene_name: MFSD6
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
MGAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.956251e-01	ci left: 3.481398e-02	ci right 4.245779e-02	k: 385	n:10000
Cons ci ratio: 1.175954e-01	ci left: 9.408985e-02	ci right 1.059443e-01	k: 999	n:10000
KS ci ratio: 1.948389e-01	ci left: 3.509982e-02	ci right 4.277176e-02	k: 388	n:10000
MGAT1   10000 perm   2 sec   (6403 perm/sec)   p_kst 3.880000e-02   p_cons 9.990000e-02   p_joint 3.850000e-02

Joint ci ratio: 8.392559e-02	ci left: 9.420749e-02	ci right 1.025097e-01	k: 1966	n:20000
Cons ci ratio: 7.789121e-02	ci left: 1.080049e-01	ci right 1.168081e-01	k: 2247	n:20000
KS ci ratio: 1.341389e-01	ci left: 3.819702e-02	ci right 4.373744e-02	k: 818	n:20000
MGAT1   20000 perm   4 sec   (5714 perm/sec)   p_kst 4.090000e-02   p_cons 1.123500e-01   p_joint 9.830000e-02

Joint ci ratio: 7.793689e-02	ci left: 7.472782e-02	ci right 8.082091e-02	k: 2332	n:30000
Cons ci ratio: 6.450706e-02	ci left: 1.060534e-01	ci right 1.131557e-01	k: 3287	n:30000
KS ci ratio: 1.095016e-01	ci left: 3.871914e-02	ci right 4.323697e-02	k: 1228	n:30000
MGAT1   30000 perm   6 sec   (5447 perm/sec)   p_kst 4.093333e-02   p_cons 1.095667e-01   p_joint 7.773333e-02

Joint ci ratio: 5.964809e-02	ci left: 9.453580e-02	ci right 1.003728e-01	k: 3897	n:40000
Cons ci ratio: 5.564423e-02	ci left: 1.072953e-01	ci right 1.134614e-01	k: 4414	n:40000
KS ci ratio: 9.461098e-02	ci left: 3.919983e-02	ci right 4.311713e-02	k: 1645	n:40000
MGAT1   40000 perm   8 sec   (5253 perm/sec)   p_kst 4.112500e-02   p_cons 1.103500e-01   p_joint 9.742500e-02

Outputting figure to mutsig2_images.part000000000105/MGAT1.2_1342_40000_0.041125_0.11035_0.097425.png
                gene_name: MGAT1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 79 percent done.
MGAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.131539e-02	ci left: 7.634461e-01	ci right 7.799953e-01	k: 7718	n:10000
KS ci ratio: 9.338490e-02	ci left: 1.427601e-01	ci right 1.568446e-01	k: 1497	n:10000
MGAT3   10000 perm   2 sec   (6193 perm/sec)   p_kst 1.497000e-01   p_cons 7.718000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MGAT3.2_1606_10000_0.1497_0.7718_1.png
                gene_name: MGAT3
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
MGAT4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.974911e-02	ci left: 6.249733e-01	ci right 6.439483e-01	k: 6345	n:10000
KS ci ratio: 5.455513e-02	ci left: 3.311104e-01	ci right 3.497826e-01	k: 3404	n:10000
MGAT4A   10000 perm   2 sec   (6132 perm/sec)   p_kst 3.404000e-01   p_cons 6.345000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MGAT4A.2_1770_10000_0.3404_0.6345_1.png
                gene_name: MGAT4A
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
MGAT5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.675168e-02	ci left: 1.341362e-01	ci right 1.478736e-01	k: 1409	n:10000
Cons ci ratio: 1.487901e-01	ci left: 6.005239e-02	ci right 6.980294e-02	k: 648	n:10000
KS ci ratio: 3.653334e-02	ci left: 5.252653e-01	ci right 5.449142e-01	k: 5351	n:10000
MGAT5B   10000 perm   2 sec   (5794 perm/sec)   p_kst 5.351000e-01   p_cons 6.480000e-02   p_joint 1.409000e-01

Joint ci ratio: 9.668205e-02	ci left: 7.226644e-02	ci right 7.965740e-02	k: 1518	n:20000
Cons ci ratio: 1.040180e-01	ci left: 6.284124e-02	ci right 6.978550e-02	k: 1325	n:20000
KS ci ratio: 2.617413e-02	ci left: 5.216531e-01	ci right 5.355386e-01	k: 10572	n:20000
MGAT5B   20000 perm   4 sec   (5187 perm/sec)   p_kst 5.286000e-01   p_cons 6.625000e-02   p_joint 7.590000e-02

Joint ci ratio: 8.047054e-02	ci left: 7.034281e-02	ci right 7.627347e-02	k: 2198	n:30000
Cons ci ratio: 8.445447e-02	ci left: 6.416347e-02	ci right 6.985406e-02	k: 2009	n:30000
KS ci ratio: 2.158118e-02	ci left: 5.180630e-01	ci right 5.293990e-01	k: 15712	n:30000
MGAT5B   30000 perm   6 sec   (4972 perm/sec)   p_kst 5.237333e-01   p_cons 6.696667e-02   p_joint 7.326667e-02

Outputting figure to mutsig2_images.part000000000105/MGAT5B.2_2542_30000_0.52373_0.066967_0.073267.png
                gene_name: MGAT5B
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.076 

Current progress: 84 percent done.
MGEA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.462208e-02	ci left: 8.713228e-01	ci right 8.842562e-01	k: 8779	n:10000
Cons ci ratio: 3.312167e-02	ci left: 5.736643e-01	ci right 5.930871e-01	k: 5834	n:10000
KS ci ratio: 3.177040e-02	ci left: 5.938334e-01	ci right 6.131063e-01	k: 6035	n:10000
MGEA5   10000 perm   2 sec   (5883 perm/sec)   p_kst 6.035000e-01   p_cons 5.834000e-01   p_joint 8.779000e-01

Outputting figure to mutsig2_images.part000000000105/MGEA5.2_2815_10000_0.6035_0.5834_0.8779.png
                gene_name: MGEA5
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 85 percent done.
MGRN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.271914e-02	ci left: 2.720070e-01	ci right 2.897208e-01	k: 2808	n:10000
KS ci ratio: 4.779148e-02	ci left: 3.924695e-01	ci right 4.117875e-01	k: 4021	n:10000
MGRN1   10000 perm   2 sec   (6122 perm/sec)   p_kst 4.021000e-01   p_cons 2.808000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MGRN1.2_1847_10000_0.4021_0.2808_1.png
                gene_name: MGRN1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
MGST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.785795e-02	ci left: 6.550482e-01	ci right 6.736560e-01	k: 6644	n:10000
Cons ci ratio: 7.090273e-02	ci left: 2.257305e-01	ci right 2.424247e-01	k: 2340	n:10000
KS ci ratio: 4.702498e-02	ci left: 4.002380e-01	ci right 4.196145e-01	k: 4099	n:10000
MGST1   10000 perm   1 sec   (6739 perm/sec)   p_kst 4.099000e-01   p_cons 2.340000e-01   p_joint 6.644000e-01

Outputting figure to mutsig2_images.part000000000105/MGST1.2_480_10000_0.4099_0.234_0.6644.png
                gene_name: MGST1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 89 percent done.
MICAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.089973e-02	ci left: 9.230676e-01	ci right 9.332812e-01	k: 9283	n:10000
KS ci ratio: 3.418225e-02	ci left: 5.582226e-01	ci right 5.777378e-01	k: 5680	n:10000
MICAL1   10000 perm   2 sec   (5486 perm/sec)   p_kst 5.680000e-01   p_cons 9.283000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MICAL1.2_3300_10000_0.568_0.9283_1.png
                gene_name: MICAL1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
MID1IP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.585526e-01	ci left: 5.301669e-02	ci right 6.224312e-02	k: 575	n:10000
Cons ci ratio: 1.402025e-01	ci left: 6.739585e-02	ci right 7.765485e-02	k: 724	n:10000
KS ci ratio: 7.461446e-02	ci left: 2.081653e-01	ci right 2.244003e-01	k: 2162	n:10000
MID1IP1   10000 perm   1 sec   (6792 perm/sec)   p_kst 2.162000e-01   p_cons 7.240000e-02   p_joint 5.750000e-02

Joint ci ratio: 9.114699e-02	ci left: 8.077881e-02	ci right 8.854244e-02	k: 1692	n:20000
Cons ci ratio: 9.744782e-02	ci left: 7.119113e-02	ci right 7.853305e-02	k: 1496	n:20000
KS ci ratio: 5.268329e-02	ci left: 2.110561e-01	ci right 2.225263e-01	k: 4335	n:20000
MID1IP1   20000 perm   3 sec   (6061 perm/sec)   p_kst 2.167500e-01   p_cons 7.480000e-02   p_joint 8.460000e-02

Outputting figure to mutsig2_images.part000000000105/MID1IP1.2_556_20000_0.21675_0.0748_0.0846.png
                gene_name: MID1IP1
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.089 

Current progress: 92 percent done.
MIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
Cons ci ratio: 3.455280e-02	ci left: 5.529105e-01	ci right 5.724530e-01	k: 5627	n:10000
KS ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
MIP   10000 perm   1 sec   (6741 perm/sec)   p_kst 5.000000e-04   p_cons 5.627000e-01   p_joint 1.000000e-03

Joint ci ratio: 7.996665e-01	ci left: 7.291366e-04	ci right 1.725068e-03	k: 23	n:20000
Cons ci ratio: 2.485879e-02	ci left: 5.472789e-01	ci right 5.611054e-01	k: 11084	n:20000
KS ci ratio: 1.086832e+00	ci left: 3.100660e-04	ci right 1.047844e-03	k: 12	n:20000
MIP   20000 perm   3 sec   (5986 perm/sec)   p_kst 6.000000e-04   p_cons 5.542000e-01   p_joint 1.150000e-03

Joint ci ratio: 6.272838e-01	ci left: 8.965198e-04	ci right 1.738189e-03	k: 38	n:30000
Cons ci ratio: 2.048857e-02	ci left: 5.439154e-01	ci right 5.552084e-01	k: 16487	n:30000
KS ci ratio: 9.236603e-01	ci left: 3.301378e-04	ci right 9.071337e-04	k: 17	n:30000
MIP   30000 perm   5 sec   (5719 perm/sec)   p_kst 5.666667e-04   p_cons 5.495667e-01   p_joint 1.266667e-03

Joint ci ratio: 5.654566e-01	ci left: 8.634696e-04	ci right 1.562198e-03	k: 47	n:40000
Cons ci ratio: 1.775786e-02	ci left: 5.442829e-01	ci right 5.540599e-01	k: 21967	n:40000
KS ci ratio: 8.990848e-01	ci left: 2.667196e-04	ci right 7.111011e-04	k: 18	n:40000
MIP   40000 perm   7 sec   (5535 perm/sec)   p_kst 4.500000e-04   p_cons 5.491750e-01   p_joint 1.175000e-03

Joint ci ratio: 5.057610e-01	ci left: 8.983883e-04	ci right 1.521854e-03	k: 59	n:50000
Cons ci ratio: 1.591258e-02	ci left: 5.438852e-01	ci right 5.526292e-01	k: 27413	n:50000
KS ci ratio: 7.837961e-01	ci left: 3.075685e-04	ci right 7.141183e-04	k: 24	n:50000
MIP   50000 perm   9 sec   (5392 perm/sec)   p_kst 4.800000e-04   p_cons 5.482600e-01   p_joint 1.180000e-03

Joint ci ratio: 4.649392e-01	ci left: 9.095833e-04	ci right 1.473787e-03	k: 70	n:60000
Cons ci ratio: 1.457200e-02	ci left: 5.427062e-01	ci right 5.506893e-01	k: 32802	n:60000
KS ci ratio: 7.406313e-01	ci left: 2.965731e-04	ci right 6.546594e-04	k: 27	n:60000
MIP   60000 perm   11 sec   (5259 perm/sec)   p_kst 4.500000e-04   p_cons 5.467000e-01   p_joint 1.166667e-03

Joint ci ratio: 4.649791e-01	ci left: 7.796294e-04	ci right 1.263273e-03	k: 70	n:70000
Cons ci ratio: 1.350432e-02	ci left: 5.425172e-01	ci right 5.499076e-01	k: 38235	n:70000
KS ci ratio: 6.928013e-01	ci left: 3.009192e-04	ci right 6.285420e-04	k: 31	n:70000
MIP   70000 perm   14 sec   (5144 perm/sec)   p_kst 4.428571e-04   p_cons 5.462143e-01   p_joint 1.000000e-03

Joint ci ratio: 4.976444e-01	ci left: 5.833007e-04	ci right 9.793569e-04	k: 61	n:80000
Cons ci ratio: 1.265516e-02	ci left: 5.418542e-01	ci right 5.487676e-01	k: 43625	n:80000
KS ci ratio: 6.624518e-01	ci left: 2.943422e-04	ci right 5.938447e-04	k: 34	n:80000
MIP   80000 perm   16 sec   (5041 perm/sec)   p_kst 4.250000e-04   p_cons 5.453125e-01   p_joint 7.625000e-04

Joint ci ratio: 4.586126e-01	ci left: 6.260017e-04	ci right 1.007363e-03	k: 72	n:90000
Cons ci ratio: 1.193734e-02	ci left: 5.418064e-01	ci right 5.483240e-01	k: 49056	n:90000
KS ci ratio: 6.047246e-01	ci left: 3.269337e-04	ci right 6.179623e-04	k: 41	n:90000
MIP   90000 perm   18 sec   (4941 perm/sec)   p_kst 4.555556e-04   p_cons 5.450667e-01   p_joint 8.000000e-04

Joint ci ratio: 4.353769e-01	ci left: 6.343996e-04	ci right 9.955718e-04	k: 80	n:100000
Cons ci ratio: 1.134412e-02	ci left: 5.411269e-01	ci right 5.473105e-01	k: 54422	n:100000
KS ci ratio: 5.908293e-01	ci left: 3.112101e-04	ci right 5.791640e-04	k: 43	n:100000
MIP   100000 perm   21 sec   (4854 perm/sec)   p_kst 4.300000e-04   p_cons 5.442200e-01   p_joint 8.000000e-04

Joint ci ratio: 3.637693e-01	ci left: 8.632047e-04	ci right 1.254778e-03	k: 115	n:110000
Cons ci ratio: 1.084005e-02	ci left: 5.401779e-01	ci right 5.460744e-01	k: 59744	n:110000
KS ci ratio: 5.434752e-01	ci left: 3.452266e-04	ci right 6.095517e-04	k: 51	n:110000
MIP   110000 perm   23 sec   (4773 perm/sec)   p_kst 4.636364e-04   p_cons 5.431273e-01   p_joint 1.045455e-03

Joint ci ratio: 3.476582e-01	ci left: 8.747511e-04	ci right 1.250034e-03	k: 126	n:120000
Cons ci ratio: 1.037652e-02	ci left: 5.404014e-01	ci right 5.460465e-01	k: 65187	n:120000
KS ci ratio: 5.102129e-01	ci left: 3.670351e-04	ci right 6.247762e-04	k: 58	n:120000
MIP   120000 perm   26 sec   (4693 perm/sec)   p_kst 4.833333e-04   p_cons 5.432250e-01   p_joint 1.050000e-03

Joint ci ratio: 3.384606e-01	ci left: 8.566690e-04	ci right 1.212347e-03	k: 133	n:130000
Cons ci ratio: 9.973972e-03	ci left: 5.402873e-01	ci right 5.457108e-01	k: 70590	n:130000
KS ci ratio: 4.898775e-01	ci left: 3.724112e-04	ci right 6.199916e-04	k: 63	n:130000
MIP   130000 perm   28 sec   (4617 perm/sec)   p_kst 4.846154e-04   p_cons 5.430000e-01   p_joint 1.023077e-03

Joint ci ratio: 3.287910e-01	ci left: 8.478349e-04	ci right 1.187664e-03	k: 141	n:140000
Cons ci ratio: 9.618916e-03	ci left: 5.399860e-01	ci right 5.452123e-01	k: 75964	n:140000
KS ci ratio: 4.861015e-01	ci left: 3.520729e-04	ci right 5.837243e-04	k: 64	n:140000
MIP   140000 perm   31 sec   (4539 perm/sec)   p_kst 4.571429e-04   p_cons 5.426000e-01   p_joint 1.007143e-03

Joint ci ratio: 3.209783e-01	ci left: 8.341730e-04	ci right 1.158947e-03	k: 148	n:150000
Cons ci ratio: 9.291139e-03	ci left: 5.401615e-01	ci right 5.452102e-01	k: 81403	n:150000
KS ci ratio: 4.718024e-01	ci left: 3.520477e-04	ci right 5.746731e-04	k: 68	n:150000
MIP   150000 perm   34 sec   (4460 perm/sec)   p_kst 4.533333e-04   p_cons 5.426867e-01   p_joint 9.866667e-04

Joint ci ratio: 3.117035e-01	ci left: 8.338223e-04	ci right 1.147214e-03	k: 157	n:160000
Cons ci ratio: 8.993718e-03	ci left: 5.403739e-01	ci right 5.452620e-01	k: 86851	n:160000
KS ci ratio: 4.555839e-01	ci left: 3.576437e-04	ci right 5.736322e-04	k: 73	n:160000
MIP   160000 perm   36 sec   (4384 perm/sec)   p_kst 4.562500e-04   p_cons 5.428188e-01   p_joint 9.812500e-04

Joint ci ratio: 3.031888e-01	ci left: 8.336318e-04	ci right 1.136743e-03	k: 166	n:170000
Cons ci ratio: 8.720353e-03	ci left: 5.407225e-01	ci right 5.454643e-01	k: 92326	n:170000
KS ci ratio: 4.437495e-01	ci left: 3.574701e-04	ci right 5.660667e-04	k: 77	n:170000
MIP   170000 perm   39 sec   (4305 perm/sec)   p_kst 4.529412e-04   p_cons 5.430941e-01   p_joint 9.764706e-04

Joint ci ratio: 2.896266e-01	ci left: 8.696044e-04	ci right 1.169063e-03	k: 182	n:180000
Cons ci ratio: 8.474657e-03	ci left: 5.407897e-01	ci right 5.453978e-01	k: 97757	n:180000
KS ci ratio: 4.301755e-01	ci left: 3.623327e-04	ci right 5.654335e-04	k: 82	n:180000
MIP   180000 perm   43 sec   (4232 perm/sec)   p_kst 4.555556e-04   p_cons 5.430944e-01   p_joint 1.011111e-03

Joint ci ratio: 2.834979e-01	ci left: 8.629149e-04	ci right 1.152657e-03	k: 190	n:190000
Cons ci ratio: 8.251336e-03	ci left: 5.406884e-01	ci right 5.451735e-01	k: 103157	n:190000
KS ci ratio: 4.201708e-01	ci left: 3.620623e-04	ci right 5.589666e-04	k: 86	n:190000
MIP   190000 perm   46 sec   (4164 perm/sec)   p_kst 4.526316e-04   p_cons 5.429316e-01   p_joint 1.000000e-03

Joint ci ratio: 2.756702e-01	ci left: 8.709145e-04	ci right 1.153869e-03	k: 201	n:200000
Cons ci ratio: 8.046326e-03	ci left: 5.405036e-01	ci right 5.448752e-01	k: 108538	n:200000
KS ci ratio: 4.085932e-01	ci left: 3.663529e-04	ci right 5.586102e-04	k: 91	n:200000
MIP   200000 perm   49 sec   (4094 perm/sec)   p_kst 4.550000e-04   p_cons 5.426900e-01   p_joint 1.005000e-03

Joint ci ratio: 2.729847e-01	ci left: 8.471784e-04	ci right 1.119280e-03	k: 205	n:210000
Cons ci ratio: 7.851049e-03	ci left: 5.406426e-01	ci right 5.449086e-01	k: 113983	n:210000
KS ci ratio: 4.020916e-01	ci left: 3.617364e-04	ci right 5.477449e-04	k: 94	n:210000
MIP   210000 perm   52 sec   (4028 perm/sec)   p_kst 4.476190e-04   p_cons 5.427762e-01   p_joint 9.761905e-04

Joint ci ratio: 2.647566e-01	ci left: 8.637800e-04	ci right 1.131466e-03	k: 218	n:220000
Cons ci ratio: 7.665260e-03	ci left: 5.410338e-01	ci right 5.452014e-01	k: 119486	n:220000
KS ci ratio: 3.899641e-01	ci left: 3.698511e-04	ci right 5.528219e-04	k: 100	n:220000
MIP   220000 perm   56 sec   (3960 perm/sec)   p_kst 4.545455e-04   p_cons 5.431182e-01   p_joint 9.909091e-04

Joint ci ratio: 2.873115e-01	ci left: 6.926503e-04	ci right 9.289183e-04	k: 185	n:230000
Cons ci ratio: 7.497640e-03	ci left: 5.410224e-01	ci right 5.450983e-01	k: 124904	n:230000
KS ci ratio: 3.861617e-01	ci left: 3.616175e-04	ci right 5.383268e-04	k: 102	n:230000
MIP   230000 perm   59 sec   (3879 perm/sec)   p_kst 4.434783e-04   p_cons 5.430609e-01   p_joint 8.043478e-04

Joint ci ratio: 2.806024e-01	ci left: 6.986202e-04	ci right 9.303761e-04	k: 194	n:240000
Cons ci ratio: 7.335750e-03	ci left: 5.413379e-01	ci right 5.453277e-01	k: 130400	n:240000
KS ci ratio: 3.753819e-01	ci left: 3.691579e-04	ci right 5.432776e-04	k: 108	n:240000
MIP   240000 perm   63 sec   (3821 perm/sec)   p_kst 4.500000e-04   p_cons 5.433333e-01   p_joint 8.083333e-04

Joint ci ratio: 2.756982e-01	ci left: 6.967226e-04	ci right 9.231092e-04	k: 201	n:250000
Cons ci ratio: 7.188718e-03	ci left: 5.412969e-01	ci right 5.452061e-01	k: 135813	n:250000
KS ci ratio: 3.719866e-01	ci left: 3.616399e-04	ci right 5.302950e-04	k: 110	n:250000
MIP   250000 perm   66 sec   (3768 perm/sec)   p_kst 4.400000e-04   p_cons 5.432520e-01   p_joint 8.040000e-04

Joint ci ratio: 2.716938e-01	ci left: 6.914187e-04	ci right 9.122621e-04	k: 207	n:260000
Cons ci ratio: 7.047017e-03	ci left: 5.414830e-01	ci right 5.453161e-01	k: 141284	n:260000
KS ci ratio: 3.686817e-01	ci left: 3.547069e-04	ci right 5.183046e-04	k: 112	n:260000
MIP   260000 perm   70 sec   (3718 perm/sec)   p_kst 4.307692e-04   p_cons 5.434000e-01   p_joint 7.961538e-04

Joint ci ratio: 2.641782e-01	ci left: 7.072711e-04	ci right 9.258958e-04	k: 219	n:270000
Cons ci ratio: 6.916990e-03	ci left: 5.413966e-01	ci right 5.451581e-01	k: 146685	n:270000
KS ci ratio: 3.592659e-01	ci left: 3.617601e-04	ci right 5.233534e-04	k: 118	n:270000
MIP   270000 perm   74 sec   (3666 perm/sec)   p_kst 4.370370e-04   p_cons 5.432778e-01   p_joint 8.111111e-04

Joint ci ratio: 2.561509e-01	ci left: 7.287527e-04	ci right 9.460793e-04	k: 233	n:280000
Cons ci ratio: 6.798061e-03	ci left: 5.410133e-01	ci right 5.447072e-01	k: 152001	n:280000
KS ci ratio: 3.464025e-01	ci left: 3.781357e-04	ci right 5.396407e-04	k: 127	n:280000
MIP   280000 perm   77 sec   (3613 perm/sec)   p_kst 4.535714e-04   p_cons 5.428607e-01   p_joint 8.321429e-04

Joint ci ratio: 2.503334e-01	ci left: 7.391478e-04	ci right 9.537884e-04	k: 244	n:290000
Cons ci ratio: 6.680875e-03	ci left: 5.409675e-01	ci right 5.445972e-01	k: 157407	n:290000
KS ci ratio: 3.385576e-01	ci left: 3.840072e-04	ci right 5.434943e-04	k: 133	n:290000
MIP   290000 perm   81 sec   (3563 perm/sec)   p_kst 4.586207e-04   p_cons 5.427828e-01   p_joint 8.413793e-04

Joint ci ratio: 2.463439e-01	ci left: 7.395168e-04	ci right 9.503183e-04	k: 252	n:300000
Cons ci ratio: 6.569636e-03	ci left: 5.409186e-01	ci right 5.444872e-01	k: 162811	n:300000
KS ci ratio: 3.360605e-01	ci left: 3.773088e-04	ci right 5.326075e-04	k: 135	n:300000
MIP   300000 perm   85 sec   (3514 perm/sec)   p_kst 4.500000e-04   p_cons 5.427033e-01   p_joint 8.400000e-04

Joint ci ratio: 2.425394e-01	ci left: 7.398872e-04	ci right 9.470469e-04	k: 260	n:310000
Cons ci ratio: 6.460036e-03	ci left: 5.411605e-01	ci right 5.446709e-01	k: 168304	n:310000
KS ci ratio: 3.277307e-01	ci left: 3.858372e-04	ci right 5.398814e-04	k: 142	n:310000
MIP   310000 perm   89 sec   (3467 perm/sec)   p_kst 4.580645e-04   p_cons 5.429161e-01   p_joint 8.387097e-04

Joint ci ratio: 2.384626e-01	ci left: 7.431962e-04	ci right 9.472680e-04	k: 269	n:320000
Cons ci ratio: 6.357944e-03	ci left: 5.412158e-01	ci right 5.446709e-01	k: 173742	n:320000
KS ci ratio: 3.221470e-01	ci left: 3.881306e-04	ci right 5.399050e-04	k: 147	n:320000
MIP   320000 perm   94 sec   (3421 perm/sec)   p_kst 4.593750e-04   p_cons 5.429437e-01   p_joint 8.406250e-04

Joint ci ratio: 2.341650e-01	ci left: 7.491845e-04	ci right 9.506564e-04	k: 279	n:330000
Cons ci ratio: 6.259091e-03	ci left: 5.413834e-01	ci right 5.447856e-01	k: 179218	n:330000
KS ci ratio: 3.147875e-01	ci left: 3.958862e-04	ci right 5.464457e-04	k: 154	n:330000
MIP   330000 perm   98 sec   (3377 perm/sec)   p_kst 4.666667e-04   p_cons 5.430848e-01   p_joint 8.454545e-04

Joint ci ratio: 2.296958e-01	ci left: 7.576233e-04	ci right 9.569247e-04	k: 290	n:340000
Cons ci ratio: 6.166244e-03	ci left: 5.414179e-01	ci right 5.447696e-01	k: 184652	n:340000
KS ci ratio: 3.079105e-01	ci left: 4.032227e-04	ci right 5.525649e-04	k: 161	n:340000
MIP   340000 perm   102 sec   (3332 perm/sec)   p_kst 4.735294e-04   p_cons 5.430941e-01   p_joint 8.529412e-04

Joint ci ratio: 2.285227e-01	ci left: 7.440558e-04	ci right 9.386474e-04	k: 293	n:350000
Cons ci ratio: 6.078110e-03	ci left: 5.413936e-01	ci right 5.446971e-01	k: 190066	n:350000
KS ci ratio: 3.079126e-01	ci left: 3.917017e-04	ci right 5.367780e-04	k: 161	n:350000
MIP   350000 perm   107 sec   (3277 perm/sec)   p_kst 4.600000e-04   p_cons 5.430457e-01   p_joint 8.371429e-04

Joint ci ratio: 2.258503e-01	ci left: 7.417254e-04	ci right 9.331232e-04	k: 300	n:360000
Cons ci ratio: 5.995965e-03	ci left: 5.411793e-01	ci right 5.444367e-01	k: 195411	n:360000
KS ci ratio: 3.051012e-01	ci left: 3.885135e-04	ci right 5.308399e-04	k: 164	n:360000
MIP   360000 perm   112 sec   (3216 perm/sec)   p_kst 4.555556e-04   p_cons 5.428083e-01   p_joint 8.333333e-04

Joint ci ratio: 2.200745e-01	ci left: 7.625083e-04	ci right 9.535565e-04	k: 316	n:370000
Cons ci ratio: 5.914226e-03	ci left: 5.412148e-01	ci right 5.444278e-01	k: 200844	n:370000
KS ci ratio: 2.954104e-01	ci left: 4.055047e-04	ci right 5.484541e-04	k: 175	n:370000
MIP   370000 perm   117 sec   (3169 perm/sec)   p_kst 4.729730e-04   p_cons 5.428216e-01   p_joint 8.540541e-04

Joint ci ratio: 2.190421e-01	ci left: 7.499023e-04	ci right 9.367918e-04	k: 319	n:380000
Cons ci ratio: 5.834998e-03	ci left: 5.413119e-01	ci right 5.444822e-01	k: 206301	n:380000
KS ci ratio: 2.937472e-01	ci left: 3.997076e-04	ci right 5.396724e-04	k: 177	n:380000
MIP   380000 perm   122 sec   (3117 perm/sec)   p_kst 4.657895e-04   p_cons 5.428974e-01   p_joint 8.394737e-04

Joint ci ratio: 2.160251e-01	ci left: 7.524938e-04	ci right 9.371037e-04	k: 328	n:390000
Cons ci ratio: 5.760240e-03	ci left: 5.412862e-01	ci right 5.444157e-01	k: 211712	n:390000
KS ci ratio: 2.881354e-01	ci left: 4.060980e-04	ci right 5.450891e-04	k: 184	n:390000
MIP   390000 perm   127 sec   (3081 perm/sec)   p_kst 4.717949e-04   p_cons 5.428513e-01   p_joint 8.410256e-04

Joint ci ratio: 2.109544e-01	ci left: 7.715439e-04	ci right 9.558102e-04	k: 344	n:400000
Cons ci ratio: 5.688456e-03	ci left: 5.412471e-01	ci right 5.443372e-01	k: 217117	n:400000
KS ci ratio: 2.806482e-01	ci left: 4.191633e-04	ci right 5.582393e-04	k: 194	n:400000
MIP   400000 perm   131 sec   (3046 perm/sec)   p_kst 4.850000e-04   p_cons 5.427925e-01   p_joint 8.600000e-04

Joint ci ratio: 2.050906e-01	ci left: 7.989668e-04	ci right 9.838138e-04	k: 364	n:410000
Cons ci ratio: 5.618461e-03	ci left: 5.412834e-01	ci right 5.443355e-01	k: 222552	n:410000
KS ci ratio: 2.717338e-01	ci left: 4.384526e-04	ci right 5.785199e-04	k: 207	n:410000
MIP   410000 perm   136 sec   (3012 perm/sec)   p_kst 5.048780e-04   p_cons 5.428098e-01   p_joint 8.878049e-04

Joint ci ratio: 2.028795e-01	ci left: 7.980185e-04	ci right 9.804089e-04	k: 372	n:420000
Cons ci ratio: 5.552054e-03	ci left: 5.412229e-01	ci right 5.442385e-01	k: 227947	n:420000
KS ci ratio: 2.666533e-01	ci left: 4.457757e-04	ci right 5.850753e-04	k: 215	n:420000
MIP   420000 perm   141 sec   (2978 perm/sec)   p_kst 5.119048e-04   p_cons 5.427310e-01   p_joint 8.857143e-04

Joint ci ratio: 1.999521e-01	ci left: 8.037515e-04	ci right 9.844782e-04	k: 383	n:430000
Cons ci ratio: 5.487175e-03	ci left: 5.412351e-01	ci right 5.442154e-01	k: 233372	n:430000
KS ci ratio: 2.636197e-01	ci left: 4.462640e-04	ci right 5.838678e-04	k: 220	n:430000
MIP   430000 perm   146 sec   (2945 perm/sec)   p_kst 5.116279e-04   p_cons 5.427256e-01   p_joint 8.906977e-04

Joint ci ratio: 1.971478e-01	ci left: 8.092419e-04	ci right 9.883446e-04	k: 394	n:440000
Cons ci ratio: 5.426904e-03	ci left: 5.410288e-01	ci right 5.439752e-01	k: 238701	n:440000
KS ci ratio: 2.606873e-01	ci left: 4.467386e-04	ci right 5.827068e-04	k: 225	n:440000
MIP   440000 perm   151 sec   (2912 perm/sec)   p_kst 5.113636e-04   p_cons 5.425023e-01   p_joint 8.954545e-04

Joint ci ratio: 1.949395e-01	ci left: 8.102771e-04	ci right 9.873618e-04	k: 403	n:450000
Cons ci ratio: 5.364441e-03	ci left: 5.412142e-01	ci right 5.441275e-01	k: 244202	n:450000
KS ci ratio: 2.567410e-01	ci left: 4.513581e-04	ci right 5.863196e-04	k: 232	n:450000
MIP   450000 perm   156 sec   (2881 perm/sec)   p_kst 5.155556e-04   p_cons 5.426711e-01   p_joint 8.955556e-04

Joint ci ratio: 1.925706e-01	ci left: 8.133471e-04	ci right 9.886896e-04	k: 413	n:460000
Cons ci ratio: 5.307479e-03	ci left: 5.410742e-01	ci right 5.439557e-01	k: 249557	n:460000
KS ci ratio: 2.534976e-01	ci left: 4.537556e-04	ci right 5.874491e-04	k: 238	n:460000
MIP   460000 perm   161 sec   (2851 perm/sec)   p_kst 5.173913e-04   p_cons 5.425152e-01   p_joint 8.978261e-04

Joint ci ratio: 1.905109e-01	ci left: 8.142726e-04	ci right 9.877197e-04	k: 422	n:470000
Cons ci ratio: 5.251144e-03	ci left: 5.410489e-01	ci right 5.438996e-01	k: 254963	n:470000
KS ci ratio: 2.529700e-01	ci left: 4.460936e-04	ci right 5.772129e-04	k: 239	n:470000
MIP   470000 perm   167 sec   (2821 perm/sec)   p_kst 5.085106e-04   p_cons 5.424745e-01   p_joint 8.978723e-04

Joint ci ratio: 1.887348e-01	ci left: 8.131840e-04	ci right 9.845992e-04	k: 430	n:480000
Cons ci ratio: 5.195781e-03	ci left: 5.410998e-01	ci right 5.439206e-01	k: 260405	n:480000
KS ci ratio: 2.514042e-01	ci left: 4.426549e-04	ci right 5.718320e-04	k: 242	n:480000
MIP   480000 perm   172 sec   (2787 perm/sec)   p_kst 5.041667e-04   p_cons 5.425104e-01   p_joint 8.958333e-04

Joint ci ratio: 1.882997e-01	ci left: 8.004769e-04	ci right 9.687801e-04	k: 432	n:490000
Cons ci ratio: 5.142661e-03	ci left: 5.410977e-01	ci right 5.438896e-01	k: 265822	n:490000
KS ci ratio: 2.514055e-01	ci left: 4.336209e-04	ci right 5.601624e-04	k: 242	n:490000
MIP   490000 perm   178 sec   (2758 perm/sec)   p_kst 4.938776e-04   p_cons 5.424939e-01   p_joint 8.816327e-04

Joint ci ratio: 1.859522e-01	ci left: 8.054370e-04	ci right 9.724336e-04	k: 443	n:500000
Cons ci ratio: 5.090707e-03	ci left: 5.411379e-01	ci right 5.439016e-01	k: 271260	n:500000
KS ci ratio: 2.488583e-01	ci left: 4.343216e-04	ci right 5.595847e-04	k: 247	n:500000
MIP   500000 perm   183 sec   (2731 perm/sec)   p_kst 4.940000e-04   p_cons 5.425200e-01   p_joint 8.860000e-04

Joint ci ratio: 1.818985e-01	ci left: 8.270554e-04	ci right 9.943843e-04	k: 463	n:510000
Cons ci ratio: 5.042646e-03	ci left: 5.409452e-01	ci right 5.436818e-01	k: 276580	n:510000
KS ci ratio: 2.449383e-01	ci left: 4.405216e-04	ci right 5.652670e-04	k: 255	n:510000
MIP   510000 perm   189 sec   (2704 perm/sec)   p_kst 5.000000e-04   p_cons 5.423137e-01   p_joint 9.078431e-04

Joint ci ratio: 1.805421e-01	ci left: 8.240012e-04	ci right 9.893332e-04	k: 470	n:520000
Cons ci ratio: 4.993830e-03	ci left: 5.409678e-01	ci right 5.436779e-01	k: 282008	n:520000
KS ci ratio: 2.435160e-01	ci left: 4.374661e-04	ci right 5.605182e-04	k: 258	n:520000
MIP   520000 perm   194 sec   (2678 perm/sec)   p_kst 4.961538e-04   p_cons 5.423231e-01   p_joint 9.038462e-04

Joint ci ratio: 1.794035e-01	ci left: 8.192646e-04	ci right 9.824970e-04	k: 476	n:530000
Cons ci ratio: 4.945634e-03	ci left: 5.410670e-01	ci right 5.437514e-01	k: 287477	n:530000
KS ci ratio: 2.430482e-01	ci left: 4.309836e-04	ci right 5.519442e-04	k: 259	n:530000
MIP   530000 perm   200 sec   (2651 perm/sec)   p_kst 4.886792e-04   p_cons 5.424094e-01   p_joint 8.981132e-04

Joint ci ratio: 1.786568e-01	ci left: 8.111682e-04	ci right 9.720420e-04	k: 480	n:540000
Cons ci ratio: 4.898880e-03	ci left: 5.411553e-01	ci right 5.438146e-01	k: 292942	n:540000
KS ci ratio: 2.430493e-01	ci left: 4.230022e-04	ci right 5.417234e-04	k: 259	n:540000
MIP   540000 perm   206 sec   (2625 perm/sec)   p_kst 4.796296e-04   p_cons 5.424852e-01   p_joint 8.888889e-04

Joint ci ratio: 1.770085e-01	ci left: 8.120550e-04	ci right 9.714598e-04	k: 489	n:550000
Cons ci ratio: 4.854546e-03	ci left: 5.411259e-01	ci right 5.437610e-01	k: 298344	n:550000
KS ci ratio: 2.398416e-01	ci left: 4.272687e-04	ci right 5.453694e-04	k: 266	n:550000
MIP   550000 perm   212 sec   (2600 perm/sec)   p_kst 4.836364e-04   p_cons 5.424436e-01   p_joint 8.890909e-04

Joint ci ratio: 1.757578e-01	ci left: 8.095020e-04	ci right 9.671637e-04	k: 496	n:560000
Cons ci ratio: 4.810513e-03	ci left: 5.411887e-01	ci right 5.438001e-01	k: 303797	n:560000
KS ci ratio: 2.380652e-01	ci left: 4.263541e-04	ci right 5.432005e-04	k: 270	n:560000
MIP   560000 perm   217 sec   (2576 perm/sec)   p_kst 4.821429e-04   p_cons 5.424946e-01   p_joint 8.857143e-04

Joint ci ratio: 1.735027e-01	ci left: 8.171107e-04	ci right 9.739985e-04	k: 509	n:570000
Cons ci ratio: 4.768381e-03	ci left: 5.411740e-01	ci right 5.437624e-01	k: 309207	n:570000
KS ci ratio: 2.350484e-01	ci left: 4.304272e-04	ci right 5.466777e-04	k: 277	n:570000
MIP   570000 perm   223 sec   (2552 perm/sec)   p_kst 4.859649e-04   p_cons 5.424684e-01   p_joint 8.929825e-04

Joint ci ratio: 1.716610e-01	ci left: 8.211691e-04	ci right 9.769891e-04	k: 520	n:580000
Cons ci ratio: 4.727172e-03	ci left: 5.411771e-01	ci right 5.437431e-01	k: 314627	n:580000
KS ci ratio: 2.333756e-01	ci left: 4.294980e-04	ci right 5.445527e-04	k: 281	n:580000
MIP   580000 perm   229 sec   (2528 perm/sec)   p_kst 4.844828e-04   p_cons 5.424603e-01   p_joint 8.965517e-04

Joint ci ratio: 1.698768e-01	ci left: 8.250983e-04	ci right 9.798700e-04	k: 531	n:590000
Cons ci ratio: 4.686726e-03	ci left: 5.412108e-01	ci right 5.437549e-01	k: 320065	n:590000
KS ci ratio: 2.309316e-01	ci left: 4.317965e-04	ci right 5.460828e-04	k: 287	n:590000
MIP   590000 perm   236 sec   (2505 perm/sec)   p_kst 4.864407e-04   p_cons 5.424831e-01   p_joint 9.000000e-04

Joint ci ratio: 1.681470e-01	ci left: 8.289047e-04	ci right 9.826467e-04	k: 542	n:600000
Cons ci ratio: 4.648690e-03	ci left: 5.410950e-01	ci right 5.436179e-01	k: 325414	n:600000
KS ci ratio: 2.293446e-01	ci left: 4.308822e-04	ci right 5.440318e-04	k: 291	n:600000
MIP   600000 perm   242 sec   (2482 perm/sec)   p_kst 4.850000e-04   p_cons 5.423567e-01   p_joint 9.033333e-04

Joint ci ratio: 1.664691e-01	ci left: 8.325939e-04	ci right 9.853248e-04	k: 553	n:610000
Cons ci ratio: 4.609189e-03	ci left: 5.412389e-01	ci right 5.437410e-01	k: 330919	n:610000
KS ci ratio: 2.270238e-01	ci left: 4.330924e-04	ci right 5.455106e-04	k: 297	n:610000
MIP   610000 perm   248 sec   (2459 perm/sec)   p_kst 4.868852e-04   p_cons 5.424902e-01   p_joint 9.065574e-04

Joint ci ratio: 1.644041e-01	ci left: 8.408111e-04	ci right 9.929468e-04	k: 567	n:620000
Cons ci ratio: 4.571732e-03	ci left: 5.412638e-01	ci right 5.437455e-01	k: 336353	n:620000
KS ci ratio: 2.236706e-01	ci left: 4.398040e-04	ci right 5.520459e-04	k: 306	n:620000
MIP   620000 perm   254 sec   (2437 perm/sec)   p_kst 4.935484e-04   p_cons 5.425048e-01   p_joint 9.145161e-04

Joint ci ratio: 1.631169e-01	ci left: 8.411651e-04	ci right 9.920564e-04	k: 576	n:630000
Cons ci ratio: 4.535449e-03	ci left: 5.412577e-01	ci right 5.437197e-01	k: 341768	n:630000
KS ci ratio: 2.222278e-01	ci left: 4.388176e-04	ci right 5.499865e-04	k: 310	n:630000
MIP   630000 perm   261 sec   (2415 perm/sec)   p_kst 4.920635e-04   p_cons 5.424889e-01   p_joint 9.142857e-04

Joint ci ratio: 1.622757e-01	ci left: 8.370151e-04	ci right 9.863121e-04	k: 582	n:640000
Cons ci ratio: 4.499591e-03	ci left: 5.412988e-01	ci right 5.437414e-01	k: 347213	n:640000
KS ci ratio: 2.211640e-01	ci left: 4.363883e-04	ci right 5.463404e-04	k: 313	n:640000
MIP   640000 perm   267 sec   (2395 perm/sec)   p_kst 4.890625e-04   p_cons 5.425203e-01   p_joint 9.093750e-04

Joint ci ratio: 1.602268e-01	ci left: 8.462840e-04	ci right 9.951450e-04	k: 597	n:650000
Cons ci ratio: 4.465194e-03	ci left: 5.412695e-01	ci right 5.436932e-01	k: 352613	n:650000
KS ci ratio: 2.183988e-01	ci left: 4.413049e-04	ci right 5.509191e-04	k: 321	n:650000
MIP   650000 perm   274 sec   (2374 perm/sec)   p_kst 4.938462e-04   p_cons 5.424815e-01   p_joint 9.184615e-04

Joint ci ratio: 1.592975e-01	ci left: 8.436434e-04	ci right 9.910969e-04	k: 604	n:660000
Cons ci ratio: 4.431398e-03	ci left: 5.412608e-01	ci right 5.436661e-01	k: 358026	n:660000
KS ci ratio: 2.173888e-01	ci left: 4.389158e-04	ci right 5.473651e-04	k: 324	n:660000
MIP   660000 perm   281 sec   (2353 perm/sec)   p_kst 4.909091e-04   p_cons 5.424636e-01   p_joint 9.151515e-04

Joint ci ratio: 1.585138e-01	ci left: 8.396507e-04	ci right 9.856156e-04	k: 610	n:670000
Cons ci ratio: 4.397709e-03	ci left: 5.413256e-01	ci right 5.437129e-01	k: 363488	n:670000
KS ci ratio: 2.163926e-01	ci left: 4.365992e-04	ci right 5.439160e-04	k: 327	n:670000
MIP   670000 perm   287 sec   (2332 perm/sec)   p_kst 4.880597e-04   p_cons 5.425194e-01   p_joint 9.104478e-04

Joint ci ratio: 1.573591e-01	ci left: 8.400151e-04	ci right 9.848792e-04	k: 619	n:680000
Cons ci ratio: 4.365191e-03	ci left: 5.413415e-01	ci right 5.437111e-01	k: 368918	n:680000
KS ci ratio: 2.154101e-01	ci left: 4.343518e-04	ci right 5.405673e-04	k: 330	n:680000
MIP   680000 perm   294 sec   (2312 perm/sec)   p_kst 4.852941e-04   p_cons 5.425265e-01   p_joint 9.102941e-04

Joint ci ratio: 1.557344e-01	ci left: 8.459437e-04	ci right 9.901834e-04	k: 632	n:690000
Cons ci ratio: 4.333561e-03	ci left: 5.413367e-01	ci right 5.436891e-01	k: 374334	n:690000
KS ci ratio: 2.141203e-01	ci left: 4.335421e-04	ci right 5.388415e-04	k: 334	n:690000
MIP   690000 perm   301 sec   (2292 perm/sec)   p_kst 4.840580e-04   p_cons 5.425130e-01   p_joint 9.159420e-04

Joint ci ratio: 1.543985e-01	ci left: 8.489635e-04	ci right 9.923613e-04	k: 643	n:700000
Cons ci ratio: 4.301544e-03	ci left: 5.414549e-01	ci right 5.437904e-01	k: 379836	n:700000
KS ci ratio: 2.122280e-01	ci left: 4.354625e-04	ci right 5.401720e-04	k: 340	n:700000
MIP   700000 perm   308 sec   (2272 perm/sec)   p_kst 4.857143e-04   p_cons 5.426229e-01   p_joint 9.185714e-04

Joint ci ratio: 1.534484e-01	ci left: 8.478398e-04	ci right 9.900857e-04	k: 651	n:710000
Cons ci ratio: 4.271123e-03	ci left: 5.414657e-01	ci right 5.437847e-01	k: 385264	n:710000
KS ci ratio: 2.109943e-01	ci left: 4.346645e-04	ci right 5.384959e-04	k: 344	n:710000
MIP   710000 perm   315 sec   (2254 perm/sec)   p_kst 4.845070e-04   p_cons 5.426254e-01   p_joint 9.169014e-04

Joint ci ratio: 1.519408e-01	ci left: 8.534301e-04	ci right 9.950792e-04	k: 664	n:720000
Cons ci ratio: 4.240899e-03	ci left: 5.415276e-01	ci right 5.438304e-01	k: 390729	n:720000
KS ci ratio: 2.088855e-01	ci left: 4.378387e-04	ci right 5.412493e-04	k: 351	n:720000
MIP   720000 perm   322 sec   (2235 perm/sec)   p_kst 4.875000e-04   p_cons 5.426792e-01   p_joint 9.222222e-04

Joint ci ratio: 1.508110e-01	ci left: 8.549191e-04	ci right 9.956650e-04	k: 674	n:730000
Cons ci ratio: 4.211552e-03	ci left: 5.415591e-01	ci right 5.438460e-01	k: 396173	n:730000
KS ci ratio: 2.071275e-01	ci left: 4.396320e-04	ci right 5.424816e-04	k: 357	n:730000
MIP   730000 perm   330 sec   (2214 perm/sec)   p_kst 4.890411e-04   p_cons 5.427027e-01   p_joint 9.232877e-04

Joint ci ratio: 1.500353e-01	ci left: 8.524695e-04	ci right 9.920254e-04	k: 681	n:740000
Cons ci ratio: 4.183101e-03	ci left: 5.415547e-01	ci right 5.438261e-01	k: 401591	n:740000
KS ci ratio: 2.065517e-01	ci left: 4.362536e-04	ci right 5.379934e-04	k: 359	n:740000
MIP   740000 perm   337 sec   (2196 perm/sec)   p_kst 4.851351e-04   p_cons 5.426905e-01   p_joint 9.202703e-04

Joint ci ratio: 1.615946e-01	ci left: 7.206458e-04	ci right 8.485941e-04	k: 587	n:750000
Cons ci ratio: 4.154796e-03	ci left: 5.416011e-01	ci right 5.438573e-01	k: 407047	n:750000
KS ci ratio: 2.054138e-01	ci left: 4.354952e-04	ci right 5.364282e-04	k: 363	n:750000
MIP   750000 perm   344 sec   (2178 perm/sec)   p_kst 4.840000e-04   p_cons 5.427293e-01   p_joint 7.826667e-04

Joint ci ratio: 1.602375e-01	ci left: 7.237918e-04	ci right 8.511155e-04	k: 597	n:760000
Cons ci ratio: 4.126827e-03	ci left: 5.416739e-01	ci right 5.439152e-01	k: 412524	n:760000
KS ci ratio: 2.031927e-01	ci left: 4.397529e-04	ci right 5.404339e-04	k: 371	n:760000
MIP   760000 perm   352 sec   (2161 perm/sec)   p_kst 4.881579e-04   p_cons 5.427947e-01   p_joint 7.855263e-04

Joint ci ratio: 1.591763e-01	ci left: 7.243663e-04	ci right 8.508666e-04	k: 605	n:770000
Cons ci ratio: 4.100113e-03	ci left: 5.416605e-01	ci right 5.438872e-01	k: 417936	n:770000
KS ci ratio: 2.018407e-01	ci left: 4.402061e-04	ci right 5.402376e-04	k: 376	n:770000
MIP   770000 perm   359 sec   (2143 perm/sec)   p_kst 4.883117e-04   p_cons 5.427740e-01   p_joint 7.857143e-04

Joint ci ratio: 1.580072e-01	ci left: 7.261601e-04	ci right 8.519540e-04	k: 614	n:780000
Cons ci ratio: 4.074364e-03	ci left: 5.415924e-01	ci right 5.438048e-01	k: 423305	n:780000
KS ci ratio: 2.005154e-01	ci left: 4.406498e-04	ci right 5.400442e-04	k: 381	n:780000
MIP   780000 perm   367 sec   (2126 perm/sec)   p_kst 4.884615e-04   p_cons 5.426987e-01   p_joint 7.871795e-04

Joint ci ratio: 1.576237e-01	ci left: 7.206156e-04	ci right 8.451173e-04	k: 617	n:790000
Cons ci ratio: 4.048536e-03	ci left: 5.415943e-01	ci right 5.437927e-01	k: 428728	n:790000
KS ci ratio: 1.997329e-01	ci left: 4.386790e-04	ci right 5.371957e-04	k: 384	n:790000
MIP   790000 perm   374 sec   (2110 perm/sec)   p_kst 4.860759e-04   p_cons 5.426937e-01   p_joint 7.810127e-04

Joint ci ratio: 1.566133e-01	ci left: 7.212147e-04	ci right 8.449461e-04	k: 625	n:800000
Cons ci ratio: 4.022494e-03	ci left: 5.416826e-01	ci right 5.438671e-01	k: 434220	n:800000
KS ci ratio: 1.987034e-01	ci left: 4.379461e-04	ci right 5.357299e-04	k: 388	n:800000
MIP   800000 perm   382 sec   (2093 perm/sec)   p_kst 4.850000e-04   p_cons 5.427750e-01   p_joint 7.812500e-04

Joint ci ratio: 1.558683e-01	ci left: 7.194286e-04	ci right 8.422116e-04	k: 631	n:810000
Cons ci ratio: 3.996898e-03	ci left: 5.417749e-01	ci right 5.439458e-01	k: 439717	n:810000
KS ci ratio: 1.976897e-01	ci left: 4.372326e-04	ci right 5.342990e-04	k: 392	n:810000
MIP   810000 perm   390 sec   (2076 perm/sec)   p_kst 4.839506e-04   p_cons 5.428605e-01   p_joint 7.790123e-04

Joint ci ratio: 1.548910e-01	ci left: 7.200319e-04	ci right 8.420758e-04	k: 639	n:820000
Cons ci ratio: 3.971795e-03	ci left: 5.418637e-01	ci right 5.440213e-01	k: 445213	n:820000
KS ci ratio: 1.961976e-01	ci left: 4.388568e-04	ci right 5.354605e-04	k: 398	n:820000
MIP   820000 perm   398 sec   (2060 perm/sec)   p_kst 4.853659e-04   p_cons 5.429427e-01   p_joint 7.792683e-04

Joint ci ratio: 1.416625e-01	ci left: 8.563869e-04	ci right 9.881000e-04	k: 764	n:830000
Cons ci ratio: 3.947819e-03	ci left: 5.418673e-01	ci right 5.440119e-01	k: 450640	n:830000
KS ci ratio: 1.947387e-01	ci left: 4.404446e-04	ci right 5.365914e-04	k: 404	n:830000
MIP   830000 perm   406 sec   (2045 perm/sec)   p_kst 4.867470e-04   p_cons 5.429398e-01   p_joint 9.204819e-04

Joint ci ratio: 1.408365e-01	ci left: 8.565275e-04	ci right 9.874296e-04	k: 773	n:840000
Cons ci ratio: 3.923510e-03	ci left: 5.419673e-01	ci right 5.440991e-01	k: 456148	n:840000
KS ci ratio: 1.937842e-01	ci left: 4.397315e-04	ci right 5.351966e-04	k: 408	n:840000
MIP   840000 perm   414 sec   (2029 perm/sec)   p_kst 4.857143e-04   p_cons 5.430333e-01   p_joint 9.202381e-04

Joint ci ratio: 1.519515e-01	ci left: 7.229018e-04	ci right 8.428953e-04	k: 664	n:850000
Cons ci ratio: 3.901096e-03	ci left: 5.418803e-01	ci right 5.439995e-01	k: 461499	n:850000
KS ci ratio: 1.930776e-01	ci left: 4.379166e-04	ci right 5.326004e-04	k: 411	n:850000
MIP   850000 perm   422 sec   (2013 perm/sec)   p_kst 4.835294e-04   p_cons 5.429400e-01   p_joint 7.811765e-04

Joint ci ratio: 1.509335e-01	ci left: 7.245646e-04	ci right 8.439555e-04	k: 673	n:860000
Cons ci ratio: 3.877916e-03	ci left: 5.419418e-01	ci right 5.440486e-01	k: 466976	n:860000
KS ci ratio: 1.916868e-01	ci left: 4.394653e-04	ci right 5.337197e-04	k: 417	n:860000
MIP   860000 perm   430 sec   (1998 perm/sec)   p_kst 4.848837e-04   p_cons 5.429953e-01   p_joint 7.825581e-04

Joint ci ratio: 1.502663e-01	ci left: 7.228729e-04	ci right 8.414112e-04	k: 679	n:870000
Cons ci ratio: 3.855457e-03	ci left: 5.419617e-01	ci right 5.440564e-01	k: 472418	n:870000
KS ci ratio: 1.912301e-01	ci left: 4.366026e-04	ci right 5.299940e-04	k: 419	n:870000
MIP   870000 perm   439 sec   (1984 perm/sec)   p_kst 4.816092e-04   p_cons 5.430092e-01   p_joint 7.804598e-04

Joint ci ratio: 1.493901e-01	ci left: 7.234085e-04	ci right 8.412812e-04	k: 687	n:880000
Cons ci ratio: 3.833507e-03	ci left: 5.419653e-01	ci right 5.440480e-01	k: 477846	n:880000
KS ci ratio: 1.901019e-01	ci left: 4.370518e-04	ci right 5.299240e-04	k: 424	n:880000
MIP   880000 perm   447 sec   (1968 perm/sec)   p_kst 4.818182e-04   p_cons 5.430068e-01   p_joint 7.806818e-04

Joint ci ratio: 1.483159e-01	ci left: 7.260979e-04	ci right 8.434826e-04	k: 697	n:890000
Cons ci ratio: 3.811669e-03	ci left: 5.420026e-01	ci right 5.440735e-01	k: 483304	n:890000
KS ci ratio: 1.889934e-01	ci left: 4.374925e-04	ci right 5.298540e-04	k: 429	n:890000
MIP   890000 perm   456 sec   (1953 perm/sec)   p_kst 4.820225e-04   p_cons 5.430382e-01   p_joint 7.831461e-04

Joint ci ratio: 1.474732e-01	ci left: 7.265901e-04	ci right 8.433282e-04	k: 705	n:900000
Cons ci ratio: 3.790760e-03	ci left: 5.419657e-01	ci right 5.440251e-01	k: 488696	n:900000
KS ci ratio: 1.881205e-01	ci left: 4.368661e-04	ci right 5.286208e-04	k: 433	n:900000
MIP   900000 perm   464 sec   (1938 perm/sec)   p_kst 4.811111e-04   p_cons 5.429956e-01   p_joint 7.833333e-04

Joint ci ratio: 1.470575e-01	ci left: 7.228391e-04	ci right 8.386184e-04	k: 709	n:910000
Cons ci ratio: 3.770232e-03	ci left: 5.419242e-01	ci right 5.439723e-01	k: 494083	n:910000
KS ci ratio: 1.872597e-01	ci left: 4.362545e-04	ci right 5.274137e-04	k: 437	n:910000
MIP   910000 perm   473 sec   (1924 perm/sec)   p_kst 4.802198e-04   p_cons 5.429484e-01   p_joint 7.791209e-04

Joint ci ratio: 1.458300e-01	ci left: 7.275479e-04	ci right 8.430239e-04	k: 721	n:920000
Cons ci ratio: 3.749780e-03	ci left: 5.419173e-01	ci right 5.439542e-01	k: 499501	n:920000
KS ci ratio: 1.859900e-01	ci left: 4.377297e-04	ci right 5.285070e-04	k: 443	n:920000
MIP   920000 perm   482 sec   (1911 perm/sec)   p_kst 4.815217e-04   p_cons 5.429359e-01   p_joint 7.836957e-04

Joint ci ratio: 1.448303e-01	ci left: 7.300865e-04	ci right 8.451024e-04	k: 731	n:930000
Cons ci ratio: 3.729334e-03	ci left: 5.419536e-01	ci right 5.439795e-01	k: 504959	n:930000
KS ci ratio: 1.841327e-01	ci left: 4.422521e-04	ci right 5.329492e-04	k: 452	n:930000
MIP   930000 perm   490 sec   (1897 perm/sec)   p_kst 4.860215e-04   p_cons 5.429667e-01   p_joint 7.860215e-04

Joint ci ratio: 1.442405e-01	ci left: 7.284718e-04	ci right 8.427257e-04	k: 737	n:940000
Cons ci ratio: 3.709490e-03	ci left: 5.419529e-01	ci right 5.439681e-01	k: 510383	n:940000
KS ci ratio: 1.837279e-01	ci left: 4.395769e-04	ci right 5.295051e-04	k: 454	n:940000
MIP   940000 perm   499 sec   (1883 perm/sec)   p_kst 4.829787e-04   p_cons 5.429606e-01   p_joint 7.840426e-04

Joint ci ratio: 1.432729e-01	ci left: 7.309514e-04	ci right 8.447595e-04	k: 747	n:950000
Cons ci ratio: 3.689896e-03	ci left: 5.419608e-01	ci right 5.439653e-01	k: 515815	n:950000
KS ci ratio: 1.831253e-01	ci left: 4.379627e-04	ci right 5.272342e-04	k: 457	n:950000
MIP   950000 perm   508 sec   (1869 perm/sec)   p_kst 4.810526e-04   p_cons 5.429632e-01   p_joint 7.863158e-04

Joint ci ratio: 1.422307e-01	ci left: 7.343865e-04	ci right 8.478271e-04	k: 758	n:960000
Cons ci ratio: 3.670694e-03	ci left: 5.419570e-01	ci right 5.439510e-01	k: 521236	n:960000
KS ci ratio: 1.819374e-01	ci left: 4.393650e-04	ci right 5.282774e-04	k: 463	n:960000
MIP   960000 perm   517 sec   (1856 perm/sec)   p_kst 4.822917e-04   p_cons 5.429542e-01   p_joint 7.895833e-04

Joint ci ratio: 1.306060e-01	ci left: 8.672280e-04	ci right 9.893920e-04	k: 899	n:970000
Cons ci ratio: 3.651948e-03	ci left: 5.419317e-01	ci right 5.439154e-01	k: 526636	n:970000
KS ci ratio: 1.803886e-01	ci left: 4.427090e-04	ci right 5.314521e-04	k: 471	n:970000
MIP   970000 perm   526 sec   (1843 perm/sec)   p_kst 4.855670e-04   p_cons 5.429237e-01   p_joint 9.268041e-04

Joint ci ratio: 1.301012e-01	ci left: 8.652887e-04	ci right 9.866719e-04	k: 906	n:980000
Cons ci ratio: 3.632911e-03	ci left: 5.419855e-01	ci right 5.439591e-01	k: 532113	n:980000
KS ci ratio: 1.798182e-01	ci left: 4.411147e-04	ci right 5.292283e-04	k: 474	n:980000
MIP   980000 perm   535 sec   (1831 perm/sec)   p_kst 4.836735e-04   p_cons 5.429724e-01   p_joint 9.244898e-04

Joint ci ratio: 1.293898e-01	ci left: 8.663216e-04	ci right 9.871341e-04	k: 916	n:990000
Cons ci ratio: 3.614249e-03	ci left: 5.420272e-01	ci right 5.439907e-01	k: 537579	n:990000
KS ci ratio: 1.788792e-01	ci left: 4.414828e-04	ci right 5.291595e-04	k: 479	n:990000
MIP   990000 perm   544 sec   (1819 perm/sec)   p_kst 4.838384e-04   p_cons 5.430091e-01   p_joint 9.252525e-04

Joint ci ratio: 1.289687e-01	ci left: 8.634644e-04	ci right 9.834567e-04	k: 922	n:1000000
Cons ci ratio: 3.596518e-03	ci left: 5.419790e-01	ci right 5.439327e-01	k: 542956	n:1000000
KS ci ratio: 1.781386e-01	ci left: 4.408893e-04	ci right 5.280465e-04	k: 483	n:1000000
MIP   1000000 perm   553 sec   (1807 perm/sec)   p_kst 4.830000e-04   p_cons 5.429560e-01   p_joint 9.220000e-04

Joint ci ratio: 1.286211e-01	ci left: 8.597061e-04	ci right 9.788295e-04	k: 927	n:1010000
Cons ci ratio: 3.578901e-03	ci left: 5.419516e-01	ci right 5.438957e-01	k: 548353	n:1010000
KS ci ratio: 1.775892e-01	ci left: 4.393620e-04	ci right 5.259208e-04	k: 486	n:1010000
MIP   1010000 perm   563 sec   (1795 perm/sec)   p_kst 4.811881e-04   p_cons 5.429238e-01   p_joint 9.178218e-04

Joint ci ratio: 1.280019e-01	ci left: 8.598179e-04	ci right 9.783398e-04	k: 936	n:1020000
Cons ci ratio: 3.561928e-03	ci left: 5.418709e-01	ci right 5.438054e-01	k: 553695	n:1020000
KS ci ratio: 1.766845e-01	ci left: 4.397392e-04	ci right 5.258838e-04	k: 491	n:1020000
MIP   1020000 perm   572 sec   (1783 perm/sec)   p_kst 4.813725e-04   p_cons 5.428382e-01   p_joint 9.176471e-04

Joint ci ratio: 1.162916e-01	ci left: 1.037848e-03	ci right 1.166925e-03	k: 1134	n:1030000
Cons ci ratio: 3.544417e-03	ci left: 5.419005e-01	ci right 5.438255e-01	k: 559149	n:1030000
KS ci ratio: 1.756168e-01	ci left: 4.410383e-04	ci right 5.268599e-04	k: 497	n:1030000
MIP   1030000 perm   581 sec   (1772 perm/sec)   p_kst 4.825243e-04   p_cons 5.428631e-01   p_joint 1.100971e-03

Joint ci ratio: 1.156817e-01	ci left: 1.039073e-03	ci right 1.167578e-03	k: 1146	n:1040000
Cons ci ratio: 3.527388e-03	ci left: 5.418978e-01	ci right 5.438135e-01	k: 564570	n:1040000
KS ci ratio: 1.743953e-01	ci left: 4.432336e-04	ci right 5.288192e-04	k: 504	n:1040000
MIP   1040000 perm   591 sec   (1760 perm/sec)   p_kst 4.846154e-04   p_cons 5.428558e-01   p_joint 1.101923e-03

Joint ci ratio: 1.151309e-01	ci left: 1.039351e-03	ci right 1.167237e-03	k: 1157	n:1050000
Cons ci ratio: 3.510083e-03	ci left: 5.419685e-01	ci right 5.438751e-01	k: 570068	n:1050000
KS ci ratio: 1.731988e-01	ci left: 4.453890e-04	ci right 5.307391e-04	k: 511	n:1050000
MIP   1050000 perm   601 sec   (1749 perm/sec)   p_kst 4.866667e-04   p_cons 5.429219e-01   p_joint 1.101905e-03

Joint ci ratio: 1.143922e-01	ci left: 1.043290e-03	ci right 1.170782e-03	k: 1172	n:1060000
Cons ci ratio: 3.493402e-03	ci left: 5.419850e-01	ci right 5.438826e-01	k: 575510	n:1060000
KS ci ratio: 1.721927e-01	ci left: 4.466030e-04	ci right 5.316369e-04	k: 517	n:1060000
MIP   1060000 perm   611 sec   (1736 perm/sec)   p_kst 4.877358e-04   p_cons 5.429340e-01   p_joint 1.105660e-03

Joint ci ratio: 1.138115e-01	ci left: 1.044435e-03	ci right 1.171375e-03	k: 1184	n:1070000
Cons ci ratio: 3.477087e-03	ci left: 5.419826e-01	ci right 5.438713e-01	k: 580932	n:1070000
KS ci ratio: 1.716964e-01	ci left: 4.451122e-04	ci right 5.295927e-04	k: 520	n:1070000
MIP   1070000 perm   621 sec   (1723 perm/sec)   p_kst 4.859813e-04   p_cons 5.429271e-01   p_joint 1.106542e-03

Joint ci ratio: 1.131449e-01	ci left: 1.047359e-03	ci right 1.173859e-03	k: 1198	n:1080000
Cons ci ratio: 3.460735e-03	ci left: 5.420183e-01	ci right 5.438982e-01	k: 586395	n:1080000
KS ci ratio: 1.708784e-01	ci left: 4.454219e-04	ci right 5.295169e-04	k: 525	n:1080000
MIP   1080000 perm   631 sec   (1713 perm/sec)   p_kst 4.861111e-04   p_cons 5.429583e-01   p_joint 1.109259e-03

Joint ci ratio: 1.232278e-01	ci left: 8.703579e-04	ci right 9.855316e-04	k: 1010	n:1090000
Cons ci ratio: 3.445273e-03	ci left: 5.419578e-01	ci right 5.438291e-01	k: 591754	n:1090000
KS ci ratio: 1.705547e-01	ci left: 4.430919e-04	ci right 5.265722e-04	k: 527	n:1090000
MIP   1090000 perm   640 sec   (1702 perm/sec)   p_kst 4.834862e-04   p_cons 5.428936e-01   p_joint 9.266055e-04

Joint ci ratio: 1.122591e-01	ci left: 1.045102e-03	ci right 1.170276e-03	k: 1217	n:1100000
Cons ci ratio: 3.429407e-03	ci left: 5.419867e-01	ci right 5.438494e-01	k: 597210	n:1100000
KS ci ratio: 1.697528e-01	ci left: 4.434157e-04	ci right 5.265240e-04	k: 532	n:1100000
MIP   1100000 perm   650 sec   (1691 perm/sec)   p_kst 4.836364e-04   p_cons 5.429182e-01   p_joint 1.106364e-03

Joint ci ratio: 1.117556e-01	ci left: 1.045319e-03	ci right 1.169920e-03	k: 1228	n:1110000
Cons ci ratio: 3.413714e-03	ci left: 5.420214e-01	ci right 5.438757e-01	k: 602673	n:1110000
KS ci ratio: 1.686488e-01	ci left: 4.454602e-04	ci right 5.283536e-04	k: 539	n:1110000
MIP   1110000 perm   660 sec   (1681 perm/sec)   p_kst 4.855856e-04   p_cons 5.429486e-01   p_joint 1.106306e-03

Joint ci ratio: 1.112139e-01	ci left: 1.046401e-03	ci right 1.170487e-03	k: 1240	n:1120000
Cons ci ratio: 3.398566e-03	ci left: 5.420072e-01	ci right 5.438533e-01	k: 608082	n:1120000
KS ci ratio: 1.678734e-01	ci left: 4.457592e-04	ci right 5.282883e-04	k: 544	n:1120000
MIP   1120000 perm   671 sec   (1670 perm/sec)   p_kst 4.857143e-04   p_cons 5.429304e-01   p_joint 1.107143e-03

Joint ci ratio: 1.105477e-01	ci left: 1.050048e-03	ci right 1.173771e-03	k: 1255	n:1130000
Cons ci ratio: 3.383327e-03	ci left: 5.420358e-01	ci right 5.438737e-01	k: 613539	n:1130000
KS ci ratio: 1.669568e-01	ci left: 4.469017e-04	ci right 5.291451e-04	k: 550	n:1130000
MIP   1130000 perm   681 sec   (1660 perm/sec)   p_kst 4.867257e-04   p_cons 5.429549e-01   p_joint 1.110619e-03

Joint ci ratio: 1.099799e-01	ci left: 1.051926e-03	ci right 1.175193e-03	k: 1268	n:1140000
Cons ci ratio: 3.368459e-03	ci left: 5.420394e-01	ci right 5.438692e-01	k: 618968	n:1140000
KS ci ratio: 1.660551e-01	ci left: 4.480254e-04	ci right 5.299858e-04	k: 556	n:1140000
MIP   1140000 perm   691 sec   (1650 perm/sec)   p_kst 4.877193e-04   p_cons 5.429544e-01   p_joint 1.112281e-03

Joint ci ratio: 1.092928e-01	ci left: 1.056310e-03	ci right 1.179268e-03	k: 1284	n:1150000
Cons ci ratio: 3.353990e-03	ci left: 5.420125e-01	ci right 5.438343e-01	k: 624362	n:1150000
KS ci ratio: 1.648751e-01	ci left: 4.507980e-04	ci right 5.326215e-04	k: 564	n:1150000
MIP   1150000 perm   701 sec   (1640 perm/sec)   p_kst 4.904348e-04   p_cons 5.429235e-01   p_joint 1.116522e-03

Joint ci ratio: 1.087021e-01	ci left: 1.058944e-03	ci right 1.181500e-03	k: 1298	n:1160000
Cons ci ratio: 3.339799e-03	ci left: 5.419722e-01	ci right 5.437862e-01	k: 629740	n:1160000
KS ci ratio: 1.640064e-01	ci left: 4.518714e-04	ci right 5.334150e-04	k: 570	n:1160000
MIP   1160000 perm   712 sec   (1630 perm/sec)   p_kst 4.913793e-04   p_cons 5.428793e-01   p_joint 1.118966e-03

Joint ci ratio: 1.080797e-01	ci left: 1.062366e-03	ci right 1.184569e-03	k: 1313	n:1170000
Cons ci ratio: 3.325518e-03	ci left: 5.419729e-01	ci right 5.437790e-01	k: 635165	n:1170000
KS ci ratio: 1.627287e-01	ci left: 4.553872e-04	ci right 5.368623e-04	k: 579	n:1170000
MIP   1170000 perm   723 sec   (1619 perm/sec)   p_kst 4.948718e-04   p_cons 5.428761e-01   p_joint 1.122222e-03

Joint ci ratio: 1.075489e-01	ci left: 1.064083e-03	ci right 1.185844e-03	k: 1326	n:1180000
Cons ci ratio: 3.311621e-03	ci left: 5.419430e-01	ci right 5.437415e-01	k: 640554	n:1180000
KS ci ratio: 1.620318e-01	ci left: 4.555931e-04	ci right 5.367219e-04	k: 584	n:1180000
MIP   1180000 perm   733 sec   (1609 perm/sec)   p_kst 4.949153e-04   p_cons 5.428424e-01   p_joint 1.123729e-03

Joint ci ratio: 1.067868e-01	ci left: 1.070680e-03	ci right 1.192273e-03	k: 1345	n:1190000
Cons ci ratio: 3.297742e-03	ci left: 5.419372e-01	ci right 5.437281e-01	k: 645971	n:1190000
KS ci ratio: 1.606641e-01	ci left: 4.598287e-04	ci right 5.409539e-04	k: 594	n:1190000
MIP   1190000 perm   744 sec   (1599 perm/sec)   p_kst 4.991597e-04   p_cons 5.428328e-01   p_joint 1.130252e-03

Joint ci ratio: 1.063924e-01	ci left: 1.069869e-03	ci right 1.190893e-03	k: 1355	n:1200000
Cons ci ratio: 3.283709e-03	ci left: 5.419807e-01	ci right 5.437641e-01	k: 651447	n:1200000
KS ci ratio: 1.599932e-01	ci left: 4.599963e-04	ci right 5.407797e-04	k: 599	n:1200000
MIP   1200000 perm   755 sec   (1589 perm/sec)   p_kst 4.991667e-04   p_cons 5.428725e-01   p_joint 1.129167e-03

Joint ci ratio: 1.058473e-01	ci left: 1.072290e-03	ci right 1.192928e-03	k: 1369	n:1210000
Cons ci ratio: 3.270410e-03	ci left: 5.419391e-01	ci right 5.437152e-01	k: 656821	n:1210000
KS ci ratio: 1.590679e-01	ci left: 4.617489e-04	ci right 5.423263e-04	k: 606	n:1210000
MIP   1210000 perm   766 sec   (1580 perm/sec)   p_kst 5.008264e-04   p_cons 5.428273e-01   p_joint 1.131405e-03

Joint ci ratio: 1.055397e-01	ci left: 1.069885e-03	ci right 1.189881e-03	k: 1377	n:1220000
Cons ci ratio: 3.256836e-03	ci left: 5.419647e-01	ci right 5.437335e-01	k: 662276	n:1220000
KS ci ratio: 1.585464e-01	ci left: 4.611124e-04	ci right 5.412899e-04	k: 610	n:1220000
MIP   1220000 perm   777 sec   (1571 perm/sec)   p_kst 5.000000e-04   p_cons 5.428492e-01   p_joint 1.128689e-03

Joint ci ratio: 1.050453e-01	ci left: 1.071477e-03	ci right 1.191054e-03	k: 1390	n:1230000
Cons ci ratio: 3.243816e-03	ci left: 5.419305e-01	ci right 5.436921e-01	k: 667658	n:1230000
KS ci ratio: 1.579017e-01	ci left: 4.612676e-04	ci right 5.411150e-04	k: 615	n:1230000
MIP   1230000 perm   788 sec   (1562 perm/sec)   p_kst 5.000000e-04   p_cons 5.428114e-01   p_joint 1.130081e-03

Joint ci ratio: 1.047072e-01	ci left: 1.069904e-03	ci right 1.188897e-03	k: 1399	n:1240000
Cons ci ratio: 3.231204e-03	ci left: 5.418582e-01	ci right 5.436126e-01	k: 672992	n:1240000
KS ci ratio: 1.573916e-01	ci left: 4.606463e-04	ci right 5.401041e-04	k: 619	n:1240000
MIP   1240000 perm   798 sec   (1553 perm/sec)   p_kst 4.991935e-04   p_cons 5.427355e-01   p_joint 1.128226e-03

Joint ci ratio: 1.042983e-01	ci left: 1.069915e-03	ci right 1.188416e-03	k: 1410	n:1250000
Cons ci ratio: 3.218613e-03	ci left: 5.418062e-01	ci right 5.435536e-01	k: 678350	n:1250000
KS ci ratio: 1.567607e-01	ci left: 4.608039e-04	ci right 5.399404e-04	k: 624	n:1250000
MIP   1250000 perm   810 sec   (1543 perm/sec)   p_kst 4.992000e-04   p_cons 5.426800e-01   p_joint 1.128000e-03

Joint ci ratio: 1.039307e-01	ci left: 1.069153e-03	ci right 1.187127e-03	k: 1420	n:1260000
Cons ci ratio: 3.205963e-03	ci left: 5.417868e-01	ci right 5.435273e-01	k: 683748	n:1260000
KS ci ratio: 1.562616e-01	ci left: 4.601970e-04	ci right 5.389540e-04	k: 628	n:1260000
MIP   1260000 perm   821 sec   (1535 perm/sec)   p_kst 4.984127e-04   p_cons 5.426571e-01   p_joint 1.126984e-03

Joint ci ratio: 1.035670e-01	ci left: 1.068404e-03	ci right 1.185858e-03	k: 1430	n:1270000
Cons ci ratio: 3.192813e-03	ci left: 5.418685e-01	ci right 5.436021e-01	k: 689274	n:1270000
KS ci ratio: 1.557671e-01	ci left: 4.596000e-04	ci right 5.379828e-04	k: 632	n:1270000
MIP   1270000 perm   833 sec   (1525 perm/sec)   p_kst 4.976378e-04   p_cons 5.427354e-01   p_joint 1.125984e-03

Joint ci ratio: 1.030282e-01	ci left: 1.071474e-03	ci right 1.188615e-03	k: 1445	n:1280000
Cons ci ratio: 3.180473e-03	ci left: 5.418474e-01	ci right 5.435743e-01	k: 694670	n:1280000
KS ci ratio: 1.546712e-01	ci left: 4.627676e-04	ci right 5.410838e-04	k: 641	n:1280000
MIP   1280000 perm   844 sec   (1516 perm/sec)   p_kst 5.007813e-04   p_cons 5.427109e-01   p_joint 1.128906e-03

Joint ci ratio: 1.028508e-01	ci left: 1.066944e-03	ci right 1.183377e-03	k: 1450	n:1290000
Cons ci ratio: 3.168241e-03	ci left: 5.418321e-01	ci right 5.435522e-01	k: 700073	n:1290000
KS ci ratio: 1.544310e-01	ci left: 4.606707e-04	ci right 5.384997e-04	k: 643	n:1290000
MIP   1290000 perm   856 sec   (1508 perm/sec)   p_kst 4.984496e-04   p_cons 5.426922e-01   p_joint 1.124031e-03

Joint ci ratio: 1.022882e-01	ci left: 1.070728e-03	ci right 1.186897e-03	k: 1466	n:1300000
Cons ci ratio: 3.155929e-03	ci left: 5.418516e-01	ci right 5.435651e-01	k: 705521	n:1300000
KS ci ratio: 1.538350e-01	ci left: 4.608249e-04	ci right 5.383518e-04	k: 648	n:1300000
MIP   1300000 perm   867 sec   (1499 perm/sec)   p_kst 4.984615e-04   p_cons 5.427085e-01   p_joint 1.127692e-03

Joint ci ratio: 1.018035e-01	ci left: 1.072969e-03	ci right 1.188797e-03	k: 1480	n:1310000
Cons ci ratio: 3.143827e-03	ci left: 5.418602e-01	ci right 5.435671e-01	k: 710955	n:1310000
KS ci ratio: 1.532458e-01	ci left: 4.609773e-04	ci right 5.382056e-04	k: 653	n:1310000
MIP   1310000 perm   879 sec   (1490 perm/sec)   p_kst 4.984733e-04   p_cons 5.427137e-01   p_joint 1.129771e-03

Joint ci ratio: 1.013935e-01	ci left: 1.073701e-03	ci right 1.189112e-03	k: 1492	n:1320000
Cons ci ratio: 3.132160e-03	ci left: 5.418216e-01	ci right 5.435221e-01	k: 716327	n:1320000
KS ci ratio: 1.525476e-01	ci left: 4.618566e-04	ci right 5.388475e-04	k: 659	n:1320000
MIP   1320000 perm   891 sec   (1482 perm/sec)   p_kst 4.992424e-04   p_cons 5.426720e-01   p_joint 1.130303e-03

Joint ci ratio: 1.010894e-01	ci left: 1.072223e-03	ci right 1.187110e-03	k: 1501	n:1330000
Cons ci ratio: 3.120503e-03	ci left: 5.418025e-01	ci right 5.434966e-01	k: 721724	n:1330000
KS ci ratio: 1.516312e-01	ci left: 4.641702e-04	ci right 5.410397e-04	k: 667	n:1330000
MIP   1330000 perm   903 sec   (1474 perm/sec)   p_kst 5.015038e-04   p_cons 5.426496e-01   p_joint 1.128571e-03

Joint ci ratio: 1.005551e-01	ci left: 1.075861e-03	ci right 1.190492e-03	k: 1517	n:1340000
Cons ci ratio: 3.108872e-03	ci left: 5.418001e-01	ci right 5.434878e-01	k: 727143	n:1340000
KS ci ratio: 1.509547e-01	ci left: 4.650143e-04	ci right 5.416491e-04	k: 673	n:1340000
MIP   1340000 perm   914 sec   (1466 perm/sec)   p_kst 5.022388e-04   p_cons 5.426440e-01   p_joint 1.132090e-03

Joint ci ratio: 1.001599e-01	ci left: 1.076557e-03	ci right 1.190785e-03	k: 1529	n:1350000
Cons ci ratio: 3.097427e-03	ci left: 5.417888e-01	ci right 5.434703e-01	k: 732550	n:1350000
KS ci ratio: 1.505088e-01	ci left: 4.644210e-04	ci right 5.407115e-04	k: 677	n:1350000
MIP   1350000 perm   926 sec   (1458 perm/sec)   p_kst 5.014815e-04   p_cons 5.426296e-01   p_joint 1.132593e-03

Joint ci ratio: 1.000295e-01	ci left: 1.071509e-03	ci right 1.185045e-03	k: 1533	n:1360000
Cons ci ratio: 3.085937e-03	ci left: 5.418049e-01	ci right 5.434802e-01	k: 737994	n:1360000
KS ci ratio: 1.501771e-01	ci left: 4.631290e-04	ci right 5.390245e-04	k: 680	n:1360000
MIP   1360000 perm   938 sec   (1450 perm/sec)   p_kst 5.000000e-04   p_cons 5.426426e-01   p_joint 1.127206e-03

Joint ci ratio: 9.976982e-02	ci left: 1.069381e-03	ci right 1.182380e-03	k: 1541	n:1370000
Cons ci ratio: 3.074547e-03	ci left: 5.418252e-01	ci right 5.434943e-01	k: 743444	n:1370000
KS ci ratio: 1.497380e-01	ci left: 4.625586e-04	ci right 5.381192e-04	k: 684	n:1370000
MIP   1370000 perm   950 sec   (1442 perm/sec)   p_kst 4.992701e-04   p_cons 5.426599e-01   p_joint 1.124818e-03

Joint ci ratio: 9.935183e-02	ci left: 1.070818e-03	ci right 1.183467e-03	k: 1554	n:1380000
Cons ci ratio: 3.063824e-03	ci left: 5.417575e-01	ci right 5.434206e-01	k: 748773	n:1380000
KS ci ratio: 1.490864e-01	ci left: 4.633921e-04	ci right 5.387300e-04	k: 690	n:1380000
MIP   1380000 perm   962 sec   (1434 perm/sec)   p_kst 5.000000e-04   p_cons 5.425891e-01   p_joint 1.126087e-03

Joint ci ratio: 9.906564e-02	ci left: 1.069428e-03	ci right 1.181588e-03	k: 1563	n:1390000
Cons ci ratio: 3.052911e-03	ci left: 5.417397e-01	ci right 5.433968e-01	k: 754170	n:1390000
KS ci ratio: 1.487640e-01	ci left: 4.621361e-04	ci right 5.370929e-04	k: 693	n:1390000
MIP   1390000 perm   974 sec   (1427 perm/sec)   p_kst 4.985612e-04   p_cons 5.425683e-01   p_joint 1.124460e-03

Joint ci ratio: 9.865641e-02	ci left: 1.070846e-03	ci right 1.182663e-03	k: 1576	n:1400000
Cons ci ratio: 3.042035e-03	ci left: 5.417350e-01	ci right 5.433862e-01	k: 759585	n:1400000
KS ci ratio: 1.481250e-01	ci left: 4.629617e-04	ci right 5.377013e-04	k: 699	n:1400000
MIP   1400000 perm   987 sec   (1419 perm/sec)   p_kst 4.992857e-04   p_cons 5.425607e-01   p_joint 1.125714e-03

Joint ci ratio: 9.822130e-02	ci left: 1.072936e-03	ci right 1.184449e-03	k: 1590	n:1410000
Cons ci ratio: 3.030707e-03	ci left: 5.418234e-01	ci right 5.434687e-01	k: 765131	n:1410000
KS ci ratio: 1.474942e-01	ci left: 4.637762e-04	ci right 5.383004e-04	k: 705	n:1410000
MIP   1410000 perm   999 sec   (1411 perm/sec)   p_kst 5.000000e-04   p_cons 5.426461e-01   p_joint 1.127660e-03

Joint ci ratio: 9.785294e-02	ci left: 1.073623e-03	ci right 1.184766e-03	k: 1602	n:1420000
Cons ci ratio: 3.019959e-03	ci left: 5.418358e-01	ci right 5.434753e-01	k: 770571	n:1420000
KS ci ratio: 1.470781e-01	ci left: 4.632233e-04	ci right 5.374302e-04	k: 709	n:1420000
MIP   1420000 perm   1012 sec   (1404 perm/sec)   p_kst 4.992958e-04   p_cons 5.426556e-01   p_joint 1.128169e-03

Joint ci ratio: 9.748870e-02	ci left: 1.074302e-03	ci right 1.185077e-03	k: 1614	n:1430000
Cons ci ratio: 3.009426e-03	ci left: 5.418313e-01	ci right 5.434650e-01	k: 775987	n:1430000
KS ci ratio: 1.466656e-01	ci left: 4.626784e-04	ci right 5.365719e-04	k: 713	n:1430000
MIP   1430000 perm   1024 sec   (1396 perm/sec)   p_kst 4.986014e-04   p_cons 5.426483e-01   p_joint 1.128671e-03

Joint ci ratio: 9.703897e-02	ci left: 1.077005e-03	ci right 1.187517e-03	k: 1629	n:1440000
Cons ci ratio: 2.999283e-03	ci left: 5.417803e-01	ci right 5.434084e-01	k: 781336	n:1440000
KS ci ratio: 1.460532e-01	ci left: 4.634794e-04	ci right 5.371648e-04	k: 719	n:1440000
MIP   1440000 perm   1037 sec   (1389 perm/sec)   p_kst 4.993056e-04   p_cons 5.425944e-01   p_joint 1.131250e-03

Joint ci ratio: 9.680182e-02	ci left: 1.074961e-03	ci right 1.184978e-03	k: 1637	n:1450000
Cons ci ratio: 2.988852e-03	ci left: 5.417949e-01	ci right 5.434173e-01	k: 786779	n:1450000
KS ci ratio: 1.458509e-01	ci left: 4.616119e-04	ci right 5.348899e-04	k: 721	n:1450000
MIP   1450000 perm   1049 sec   (1382 perm/sec)   p_kst 4.972414e-04   p_cons 5.426062e-01   p_joint 1.128966e-03

Joint ci ratio: 1.030711e-01	ci left: 9.387035e-04	ci right 1.041375e-03	k: 1444	n:1460000
Cons ci ratio: 2.978496e-03	ci left: 5.418148e-01	ci right 5.434316e-01	k: 792230	n:1460000
KS ci ratio: 1.452486e-01	ci left: 4.624101e-04	ci right 5.354854e-04	k: 727	n:1460000
MIP   1460000 perm   1062 sec   (1374 perm/sec)   p_kst 4.979452e-04   p_cons 5.426233e-01   p_joint 9.890411e-04

Joint ci ratio: 1.027163e-01	ci left: 9.389454e-04	ci right 1.041268e-03	k: 1454	n:1470000
Cons ci ratio: 2.968137e-03	ci left: 5.418528e-01	ci right 5.434641e-01	k: 797708	n:1470000
KS ci ratio: 1.444569e-01	ci left: 4.645095e-04	ci right 5.374819e-04	k: 735	n:1470000
MIP   1470000 perm   1075 sec   (1367 perm/sec)   p_kst 5.000000e-04   p_cons 5.426585e-01   p_joint 9.891156e-04

Joint ci ratio: 1.023302e-01	ci left: 9.398430e-04	ci right 1.041856e-03	k: 1465	n:1480000
Cons ci ratio: 2.957938e-03	ci left: 5.418814e-01	ci right 5.434873e-01	k: 803173	n:1480000
KS ci ratio: 1.440660e-01	ci left: 4.639760e-04	ci right 5.366505e-04	k: 739	n:1480000
MIP   1480000 perm   1088 sec   (1360 perm/sec)   p_kst 4.993243e-04   p_cons 5.426845e-01   p_joint 9.898649e-04

Joint ci ratio: 1.020175e-01	ci left: 9.394213e-04	ci right 1.041058e-03	k: 1474	n:1490000
Cons ci ratio: 2.947808e-03	ci left: 5.419158e-01	ci right 5.435163e-01	k: 808647	n:1490000
KS ci ratio: 1.434854e-01	ci left: 4.647441e-04	ci right 5.372204e-04	k: 745	n:1490000
MIP   1490000 perm   1101 sec   (1353 perm/sec)   p_kst 5.000000e-04   p_cons 5.427161e-01   p_joint 9.892617e-04

Joint ci ratio: 1.016392e-01	ci left: 9.403051e-04	ci right 1.041638e-03	k: 1485	n:1500000
Cons ci ratio: 2.937536e-03	ci left: 5.419910e-01	ci right 5.435861e-01	k: 814183	n:1500000
KS ci ratio: 1.432936e-01	ci left: 4.629313e-04	ci right 5.350201e-04	k: 747	n:1500000
MIP   1500000 perm   1114 sec   (1346 perm/sec)   p_kst 4.980000e-04   p_cons 5.427887e-01   p_joint 9.900000e-04

Joint ci ratio: 1.120920e-01	ci left: 7.639012e-04	ci right 8.552495e-04	k: 1221	n:1510000
Cons ci ratio: 2.928077e-03	ci left: 5.419454e-01	ci right 5.435352e-01	k: 819538	n:1510000
KS ci ratio: 1.429120e-01	ci left: 4.624197e-04	ci right 5.342207e-04	k: 751	n:1510000
MIP   1510000 perm   1127 sec   (1340 perm/sec)   p_kst 4.973510e-04   p_cons 5.427404e-01   p_joint 8.086093e-04

Joint ci ratio: 1.115455e-01	ci left: 7.665495e-04	ci right 8.577382e-04	k: 1233	n:1520000
Cons ci ratio: 2.918501e-03	ci left: 5.419359e-01	ci right 5.435205e-01	k: 824947	n:1520000
KS ci ratio: 1.422514e-01	ci left: 4.638184e-04	ci right 5.354755e-04	k: 758	n:1520000
MIP   1520000 perm   1140 sec   (1333 perm/sec)   p_kst 4.986842e-04   p_cons 5.427283e-01   p_joint 8.111842e-04

Joint ci ratio: 1.006285e-01	ci left: 9.409796e-04	ci right 1.041317e-03	k: 1515	n:1530000
Cons ci ratio: 2.909110e-03	ci left: 5.419109e-01	ci right 5.434903e-01	k: 830332	n:1530000
KS ci ratio: 1.415999e-01	ci left: 4.651997e-04	ci right 5.367131e-04	k: 765	n:1530000
MIP   1530000 perm   1154 sec   (1326 perm/sec)   p_kst 5.000000e-04   p_cons 5.427007e-01   p_joint 9.901961e-04

Joint ci ratio: 1.108737e-01	ci left: 7.660636e-04	ci right 8.566099e-04	k: 1248	n:1540000
Cons ci ratio: 2.899452e-03	ci left: 5.419472e-01	ci right 5.435215e-01	k: 835811	n:1540000
KS ci ratio: 1.412316e-01	ci left: 4.646844e-04	ci right 5.359173e-04	k: 769	n:1540000
MIP   1540000 perm   1167 sec   (1320 perm/sec)   p_kst 4.993506e-04   p_cons 5.427344e-01   p_joint 8.103896e-04

Joint ci ratio: 1.104324e-01	ci left: 7.673944e-04	ci right 8.577134e-04	k: 1258	n:1550000
Cons ci ratio: 2.890220e-03	ci left: 5.419263e-01	ci right 5.434955e-01	k: 841202	n:1550000
KS ci ratio: 1.405939e-01	ci left: 4.660434e-04	ci right 5.371349e-04	k: 776	n:1550000
MIP   1550000 perm   1181 sec   (1313 perm/sec)   p_kst 5.006452e-04   p_cons 5.427110e-01   p_joint 8.116129e-04

Joint ci ratio: 1.101267e-01	ci left: 7.668386e-04	ci right 8.568262e-04	k: 1265	n:1560000
Cons ci ratio: 2.880961e-03	ci left: 5.419255e-01	ci right 5.434897e-01	k: 846624	n:1560000
KS ci ratio: 1.400542e-01	ci left: 4.667671e-04	ci right 5.376728e-04	k: 782	n:1560000
MIP   1560000 perm   1194 sec   (1307 perm/sec)   p_kst 5.012821e-04   p_cons 5.427077e-01   p_joint 8.108974e-04

Joint ci ratio: 1.095655e-01	ci left: 7.700071e-04	ci right 8.598763e-04	k: 1278	n:1570000
Cons ci ratio: 2.871591e-03	ci left: 5.419592e-01	ci right 5.435183e-01	k: 852100	n:1570000
KS ci ratio: 1.395206e-01	ci left: 4.674820e-04	ci right 5.382034e-04	k: 788	n:1570000
MIP   1570000 perm   1207 sec   (1300 perm/sec)   p_kst 5.019108e-04   p_cons 5.427389e-01   p_joint 8.140127e-04

Joint ci ratio: 9.872544e-02	ci left: 9.476129e-04	ci right 1.046636e-03	k: 1574	n:1580000
Cons ci ratio: 2.862651e-03	ci left: 5.419336e-01	ci right 5.434878e-01	k: 857483	n:1580000
KS ci ratio: 1.389057e-01	ci left: 4.687994e-04	ci right 5.393816e-04	k: 795	n:1580000
MIP   1580000 perm   1221 sec   (1294 perm/sec)   p_kst 5.031646e-04   p_cons 5.427108e-01   p_joint 9.962025e-04

Joint ci ratio: 9.847572e-02	ci left: 9.465604e-04	ci right 1.045209e-03	k: 1582	n:1590000
Cons ci ratio: 2.853758e-03	ci left: 5.419146e-01	ci right 5.434639e-01	k: 862876	n:1590000
KS ci ratio: 1.386447e-01	ci left: 4.676722e-04	ci right 5.379415e-04	k: 798	n:1590000
MIP   1590000 perm   1235 sec   (1288 perm/sec)   p_kst 5.018868e-04   p_cons 5.426893e-01   p_joint 9.949686e-04

Joint ci ratio: 9.795096e-02	ci left: 9.510086e-04	ci right 1.049562e-03	k: 1599	n:1600000
Cons ci ratio: 2.844905e-03	ci left: 5.419033e-01	ci right 5.434478e-01	k: 868281	n:1600000
KS ci ratio: 1.378703e-01	ci left: 4.701797e-04	ci right 5.403988e-04	k: 807	n:1600000
MIP   1600000 perm   1248 sec   (1282 perm/sec)   p_kst 5.043750e-04   p_cons 5.426756e-01   p_joint 9.993750e-04

Joint ci ratio: 9.761595e-02	ci left: 9.517669e-04	ci right 1.050042e-03	k: 1610	n:1610000
Cons ci ratio: 2.836240e-03	ci left: 5.418736e-01	ci right 5.434132e-01	k: 873656	n:1610000
KS ci ratio: 1.371086e-01	ci left: 4.726572e-04	ci right 5.428245e-04	k: 816	n:1610000
MIP   1610000 perm   1262 sec   (1276 perm/sec)   p_kst 5.068323e-04   p_cons 5.426435e-01   p_joint 1.000000e-03

Joint ci ratio: 9.101222e-02	ci left: 1.091759e-03	ci right 1.196457e-03	k: 1852	n:1620000
Cons ci ratio: 2.827519e-03	ci left: 5.418677e-01	ci right 5.434026e-01	k: 879069	n:1620000
KS ci ratio: 1.366910e-01	ci left: 4.727203e-04	ci right 5.426658e-04	k: 821	n:1620000
MIP   1620000 perm   1276 sec   (1269 perm/sec)   p_kst 5.067901e-04   p_cons 5.426352e-01   p_joint 1.143210e-03

Joint ci ratio: 9.064597e-02	ci left: 1.094054e-03	ci right 1.198529e-03	k: 1867	n:1630000
Cons ci ratio: 2.818851e-03	ci left: 5.418667e-01	ci right 5.433969e-01	k: 884490	n:1630000
KS ci ratio: 1.361948e-01	ci left: 4.733755e-04	ci right 5.431431e-04	k: 827	n:1630000
MIP   1630000 perm   1290 sec   (1263 perm/sec)   p_kst 5.073620e-04   p_cons 5.426319e-01   p_joint 1.145399e-03

Joint ci ratio: 9.654304e-02	ci left: 9.557749e-04	ci right 1.053318e-03	k: 1646	n:1640000
Cons ci ratio: 2.810311e-03	ci left: 5.418573e-01	ci right 5.433828e-01	k: 889897	n:1640000
KS ci ratio: 1.357039e-01	ci left: 4.740232e-04	ci right 5.436141e-04	k: 833	n:1640000
MIP   1640000 perm   1304 sec   (1257 perm/sec)   p_kst 5.079268e-04   p_cons 5.426201e-01   p_joint 1.003659e-03

Joint ci ratio: 9.011688e-02	ci left: 1.093825e-03	ci right 1.197636e-03	k: 1889	n:1650000
Cons ci ratio: 2.801540e-03	ci left: 5.419025e-01	ci right 5.434234e-01	k: 895394	n:1650000
KS ci ratio: 1.352184e-01	ci left: 4.746634e-04	ci right 5.440790e-04	k: 839	n:1650000
MIP   1650000 perm   1319 sec   (1251 perm/sec)   p_kst 5.084848e-04   p_cons 5.426630e-01   p_joint 1.144848e-03

Joint ci ratio: 8.995058e-02	ci left: 1.091358e-03	ci right 1.194733e-03	k: 1896	n:1660000
Cons ci ratio: 2.792884e-03	ci left: 5.419412e-01	ci right 5.434575e-01	k: 900881	n:1660000
KS ci ratio: 1.349776e-01	ci left: 4.735502e-04	ci right 5.426697e-04	k: 842	n:1660000
MIP   1660000 perm   1333 sec   (1245 perm/sec)   p_kst 5.072289e-04   p_cons 5.426994e-01   p_joint 1.142169e-03

Joint ci ratio: 8.983245e-02	ci left: 1.087749e-03	ci right 1.190640e-03	k: 1901	n:1670000
Cons ci ratio: 2.784546e-03	ci left: 5.419369e-01	ci right 5.434486e-01	k: 906297	n:1670000
KS ci ratio: 1.348179e-01	ci left: 4.718717e-04	ci right 5.406582e-04	k: 844	n:1670000
MIP   1670000 perm   1347 sec   (1240 perm/sec)   p_kst 5.053892e-04   p_cons 5.426928e-01   p_joint 1.138323e-03

Joint ci ratio: 8.948020e-02	ci left: 1.090003e-03	ci right 1.192682e-03	k: 1916	n:1680000
Cons ci ratio: 2.776436e-03	ci left: 5.419052e-01	ci right 5.434125e-01	k: 911667	n:1680000
KS ci ratio: 1.341841e-01	ci left: 4.736646e-04	ci right 5.423620e-04	k: 852	n:1680000
MIP   1680000 perm   1361 sec   (1234 perm/sec)   p_kst 5.071429e-04   p_cons 5.426589e-01   p_joint 1.140476e-03

Joint ci ratio: 8.924776e-02	ci left: 1.089338e-03	ci right 1.191674e-03	k: 1926	n:1690000
Cons ci ratio: 2.768529e-03	ci left: 5.418503e-01	ci right 5.433531e-01	k: 916997	n:1690000
KS ci ratio: 1.337926e-01	ci left: 4.737213e-04	ci right 5.422105e-04	k: 857	n:1690000
MIP   1690000 perm   1376 sec   (1228 perm/sec)   p_kst 5.071006e-04   p_cons 5.426018e-01   p_joint 1.139645e-03

Joint ci ratio: 8.876515e-02	ci left: 1.095008e-03	ci right 1.197291e-03	k: 1947	n:1700000
Cons ci ratio: 2.760227e-03	ci left: 5.418790e-01	ci right 5.433773e-01	k: 922468	n:1700000
KS ci ratio: 1.328664e-01	ci left: 4.777581e-04	ci right 5.463150e-04	k: 869	n:1700000
MIP   1700000 perm   1391 sec   (1222 perm/sec)   p_kst 5.111765e-04   p_cons 5.426282e-01   p_joint 1.145294e-03

Joint ci ratio: 8.840273e-02	ci left: 1.097754e-03	ci right 1.199854e-03	k: 1963	n:1710000
Cons ci ratio: 2.752181e-03	ci left: 5.418746e-01	ci right 5.433685e-01	k: 927883	n:1710000
KS ci ratio: 1.319592e-01	ci left: 4.817494e-04	ci right 5.503700e-04	k: 881	n:1710000
MIP   1710000 perm   1405 sec   (1217 perm/sec)   p_kst 5.152047e-04   p_cons 5.426216e-01   p_joint 1.147953e-03

Joint ci ratio: 8.813387e-02	ci left: 1.098195e-03	ci right 1.200008e-03	k: 1975	n:1720000
Cons ci ratio: 2.743902e-03	ci left: 5.419249e-01	ci right 5.434145e-01	k: 933392	n:1720000
KS ci ratio: 1.317354e-01	ci left: 4.806352e-04	ci right 5.489719e-04	k: 884	n:1720000
MIP   1720000 perm   1420 sec   (1211 perm/sec)   p_kst 5.139535e-04   p_cons 5.426698e-01   p_joint 1.148256e-03

Joint ci ratio: 8.788959e-02	ci left: 1.098065e-03	ci right 1.199570e-03	k: 1986	n:1730000
Cons ci ratio: 2.735883e-03	ci left: 5.419411e-01	ci right 5.434264e-01	k: 938843	n:1730000
KS ci ratio: 1.315869e-01	ci left: 4.789749e-04	ci right 5.469928e-04	k: 886	n:1730000
MIP   1730000 perm   1434 sec   (1206 perm/sec)   p_kst 5.121387e-04   p_cons 5.426838e-01   p_joint 1.147977e-03

Joint ci ratio: 8.753775e-02	ci left: 1.100748e-03	ci right 1.202073e-03	k: 2002	n:1740000
Cons ci ratio: 2.728063e-03	ci left: 5.419336e-01	ci right 5.434146e-01	k: 944253	n:1740000
KS ci ratio: 1.312176e-01	ci left: 4.790013e-04	ci right 5.468171e-04	k: 891	n:1740000
MIP   1740000 perm   1449 sec   (1201 perm/sec)   p_kst 5.120690e-04   p_cons 5.426741e-01   p_joint 1.150575e-03

Joint ci ratio: 8.725501e-02	ci left: 1.101725e-03	ci right 1.202795e-03	k: 2015	n:1750000
Cons ci ratio: 2.720307e-03	ci left: 5.419267e-01	ci right 5.434035e-01	k: 949664	n:1750000
KS ci ratio: 1.307057e-01	ci left: 4.801331e-04	ci right 5.478234e-04	k: 898	n:1750000
MIP   1750000 perm   1464 sec   (1195 perm/sec)   p_kst 5.131429e-04   p_cons 5.426651e-01   p_joint 1.151429e-03

Joint ci ratio: 8.701795e-02	ci left: 1.101579e-03	ci right 1.202347e-03	k: 2026	n:1760000
Cons ci ratio: 2.712396e-03	ci left: 5.419602e-01	ci right 5.434328e-01	k: 955146	n:1760000
KS ci ratio: 1.303437e-01	ci left: 4.801532e-04	ci right 5.476444e-04	k: 903	n:1760000
MIP   1760000 perm   1479 sec   (1190 perm/sec)   p_kst 5.130682e-04   p_cons 5.426966e-01   p_joint 1.151136e-03

Joint ci ratio: 9.270988e-02	ci left: 9.622503e-04	ci right 1.056344e-03	k: 1785	n:1770000
Cons ci ratio: 2.704467e-03	ci left: 5.420092e-01	ci right 5.434776e-01	k: 960656	n:1770000
KS ci ratio: 1.298419e-01	ci left: 4.812666e-04	ci right 5.486338e-04	k: 910	n:1770000
MIP   1770000 perm   1494 sec   (1184 perm/sec)   p_kst 5.141243e-04   p_cons 5.427435e-01   p_joint 1.008475e-03

Joint ci ratio: 8.631790e-02	ci left: 1.107339e-03	ci right 1.207779e-03	k: 2059	n:1780000
Cons ci ratio: 2.696828e-03	ci left: 5.420173e-01	ci right 5.434815e-01	k: 966094	n:1780000
KS ci ratio: 1.290648e-01	ci left: 4.845425e-04	ci right 5.519313e-04	k: 921	n:1780000
MIP   1780000 perm   1510 sec   (1179 perm/sec)   p_kst 5.174157e-04   p_cons 5.427494e-01   p_joint 1.156742e-03

Joint ci ratio: 8.602602e-02	ci left: 1.108805e-03	ci right 1.209021e-03	k: 2073	n:1790000
Cons ci ratio: 2.689028e-03	ci left: 5.420665e-01	ci right 5.435266e-01	k: 971606	n:1790000
KS ci ratio: 1.288555e-01	ci left: 4.834575e-04	ci right 5.505779e-04	k: 924	n:1790000
MIP   1790000 perm   1525 sec   (1173 perm/sec)   p_kst 5.162011e-04   p_cons 5.427966e-01   p_joint 1.158101e-03

Joint ci ratio: 8.575764e-02	ci left: 1.109713e-03	ci right 1.209681e-03	k: 2086	n:1800000
Cons ci ratio: 2.681386e-03	ci left: 5.420986e-01	ci right 5.435546e-01	k: 977088	n:1800000
KS ci ratio: 1.284395e-01	ci left: 4.839977e-04	ci right 5.509597e-04	k: 930	n:1800000
MIP   1800000 perm   1541 sec   (1168 perm/sec)   p_kst 5.166667e-04   p_cons 5.428267e-01   p_joint 1.158889e-03

Joint ci ratio: 8.545102e-02	ci left: 1.111691e-03	ci right 1.211463e-03	k: 2101	n:1810000
Cons ci ratio: 2.674154e-03	ci left: 5.420662e-01	ci right 5.435182e-01	k: 982454	n:1810000
KS ci ratio: 1.278911e-01	ci left: 4.856019e-04	ci right 5.524772e-04	k: 938	n:1810000
MIP   1810000 perm   1556 sec   (1163 perm/sec)   p_kst 5.182320e-04   p_cons 5.427923e-01   p_joint 1.160773e-03

Joint ci ratio: 8.518797e-02	ci left: 1.112574e-03	ci right 1.212101e-03	k: 2114	n:1820000
Cons ci ratio: 2.666927e-03	ci left: 5.420440e-01	ci right 5.434921e-01	k: 987838	n:1820000
KS ci ratio: 1.274845e-01	ci left: 4.861251e-04	ci right 5.528435e-04	k: 944	n:1820000
MIP   1820000 perm   1572 sec   (1158 perm/sec)   p_kst 5.186813e-04   p_cons 5.427681e-01   p_joint 1.161538e-03

Joint ci ratio: 8.490736e-02	ci left: 1.113982e-03	ci right 1.213291e-03	k: 2128	n:1830000
Cons ci ratio: 2.659831e-03	ci left: 5.420085e-01	ci right 5.434526e-01	k: 993197	n:1830000
KS ci ratio: 1.270148e-01	ci left: 4.871721e-04	ci right 5.537694e-04	k: 951	n:1830000
MIP   1830000 perm   1587 sec   (1153 perm/sec)   p_kst 5.196721e-04   p_cons 5.427306e-01   p_joint 1.162842e-03

Joint ci ratio: 8.470869e-02	ci left: 1.113247e-03	ci right 1.212247e-03	k: 2138	n:1840000
Cons ci ratio: 2.652580e-03	ci left: 5.420130e-01	ci right 5.434532e-01	k: 998629	n:1840000
KS ci ratio: 1.266164e-01	ci left: 4.876819e-04	ci right 5.541240e-04	k: 957	n:1840000
MIP   1840000 perm   1603 sec   (1148 perm/sec)   p_kst 5.201087e-04   p_cons 5.427332e-01   p_joint 1.161957e-03

Joint ci ratio: 8.453110e-02	ci left: 1.111991e-03	ci right 1.210662e-03	k: 2147	n:1850000
Cons ci ratio: 2.645192e-03	ci left: 5.420542e-01	ci right 5.434905e-01	k: 1004129	n:1850000
KS ci ratio: 1.262873e-01	ci left: 4.876630e-04	ci right 5.539169e-04	k: 962	n:1850000
MIP   1850000 perm   1618 sec   (1143 perm/sec)   p_kst 5.200000e-04   p_cons 5.427724e-01   p_joint 1.160541e-03

Joint ci ratio: 8.419845e-02	ci left: 1.114960e-03	ci right 1.213486e-03	k: 2164	n:1860000
Cons ci ratio: 2.637702e-03	ci left: 5.421257e-01	ci right 5.435581e-01	k: 1009686	n:1860000
KS ci ratio: 1.257659e-01	ci left: 4.892066e-04	ci right 5.553754e-04	k: 970	n:1860000
MIP   1860000 perm   1634 sec   (1139 perm/sec)   p_kst 5.215054e-04   p_cons 5.428419e-01   p_joint 1.163441e-03

Joint ci ratio: 8.400470e-02	ci left: 1.114233e-03	ci right 1.212456e-03	k: 2174	n:1870000
Cons ci ratio: 2.630534e-03	ci left: 5.421477e-01	ci right 5.435762e-01	k: 1015152	n:1870000
KS ci ratio: 1.255077e-01	ci left: 4.886624e-04	ci right 5.546117e-04	k: 974	n:1870000
MIP   1870000 perm   1650 sec   (1134 perm/sec)   p_kst 5.208556e-04   p_cons 5.428620e-01   p_joint 1.162567e-03

Joint ci ratio: 8.383150e-02	ci left: 1.112993e-03	ci right 1.210895e-03	k: 2183	n:1880000
Cons ci ratio: 2.623541e-03	ci left: 5.421471e-01	ci right 5.435719e-01	k: 1020576	n:1880000
KS ci ratio: 1.254435e-01	ci left: 4.865783e-04	ci right 5.522103e-04	k: 975	n:1880000
MIP   1880000 perm   1665 sec   (1129 perm/sec)   p_kst 5.186170e-04   p_cons 5.428596e-01   p_joint 1.161170e-03

Joint ci ratio: 8.365936e-02	ci left: 1.111766e-03	ci right 1.209350e-03	k: 2192	n:1890000
Cons ci ratio: 2.616390e-03	ci left: 5.421874e-01	ci right 5.436083e-01	k: 1026077	n:1890000
KS ci ratio: 1.253795e-01	ci left: 4.845163e-04	ci right 5.498343e-04	k: 976	n:1890000
MIP   1890000 perm   1681 sec   (1124 perm/sec)   p_kst 5.164021e-04   p_cons 5.428979e-01   p_joint 1.159788e-03

Joint ci ratio: 8.345034e-02	ci left: 1.111583e-03	ci right 1.208895e-03	k: 2203	n:1900000
Cons ci ratio: 2.609512e-03	ci left: 5.421861e-01	ci right 5.436033e-01	k: 1031500	n:1900000
KS ci ratio: 1.253155e-01	ci left: 4.824759e-04	ci right 5.474833e-04	k: 977	n:1900000
MIP   1900000 perm   1698 sec   (1119 perm/sec)   p_kst 5.142105e-04   p_cons 5.428947e-01   p_joint 1.159474e-03

Joint ci ratio: 8.329938e-02	ci left: 1.109864e-03	ci right 1.206842e-03	k: 2211	n:1910000
Cons ci ratio: 2.602595e-03	ci left: 5.422026e-01	ci right 5.436161e-01	k: 1036957	n:1910000
KS ci ratio: 1.250600e-01	ci left: 4.819785e-04	ci right 5.467767e-04	k: 981	n:1910000
MIP   1910000 perm   1714 sec   (1115 perm/sec)   p_kst 5.136126e-04   p_cons 5.429094e-01   p_joint 1.157592e-03

Joint ci ratio: 8.301830e-02	ci left: 1.111734e-03	ci right 1.208531e-03	k: 2226	n:1920000
Cons ci ratio: 2.595912e-03	ci left: 5.421846e-01	ci right 5.435944e-01	k: 1042348	n:1920000
KS ci ratio: 1.247429e-01	ci left: 4.819910e-04	ci right 5.466144e-04	k: 986	n:1920000
MIP   1920000 perm   1730 sec   (1110 perm/sec)   p_kst 5.135417e-04   p_cons 5.428896e-01   p_joint 1.159375e-03

Joint ci ratio: 8.858932e-02	ci left: 9.685655e-04	ci right 1.058849e-03	k: 1955	n:1930000
Cons ci ratio: 2.589148e-03	ci left: 5.421922e-01	ci right 5.435983e-01	k: 1047788	n:1930000
KS ci ratio: 1.244281e-01	ci left: 4.820036e-04	ci right 5.464535e-04	k: 991	n:1930000
MIP   1930000 perm   1746 sec   (1105 perm/sec)   p_kst 5.134715e-04   p_cons 5.428953e-01   p_joint 1.012953e-03

Joint ci ratio: 8.836373e-02	ci left: 9.686135e-04	ci right 1.058660e-03	k: 1965	n:1940000
Cons ci ratio: 2.582386e-03	ci left: 5.422095e-01	ci right 5.436120e-01	k: 1053247	n:1940000
KS ci ratio: 1.239293e-01	ci left: 4.835147e-04	ci right 5.478885e-04	k: 999	n:1940000
MIP   1940000 perm   1763 sec   (1101 perm/sec)   p_kst 5.149485e-04   p_cons 5.429108e-01   p_joint 1.012887e-03

Joint ci ratio: 8.818454e-02	ci left: 9.676582e-04	ci right 1.057424e-03	k: 1973	n:1950000
Cons ci ratio: 2.575828e-03	ci left: 5.421974e-01	ci right 5.435963e-01	k: 1058649	n:1950000
KS ci ratio: 1.237439e-01	ci left: 4.825259e-04	ci right 5.466649e-04	k: 1002	n:1950000
MIP   1950000 perm   1779 sec   (1096 perm/sec)   p_kst 5.138462e-04   p_cons 5.428969e-01   p_joint 1.011795e-03

Joint ci ratio: 8.793984e-02	ci left: 9.682099e-04	ci right 1.057765e-03	k: 1984	n:1960000
Cons ci ratio: 2.569201e-03	ci left: 5.422084e-01	ci right 5.436037e-01	k: 1064096	n:1960000
KS ci ratio: 1.235593e-01	ci left: 4.815473e-04	ci right 5.454537e-04	k: 1005	n:1960000
MIP   1960000 perm   1796 sec   (1092 perm/sec)   p_kst 5.127551e-04   p_cons 5.429061e-01   p_joint 1.012245e-03

Joint ci ratio: 8.771917e-02	ci left: 9.682598e-04	ci right 1.057583e-03	k: 1994	n:1970000
Cons ci ratio: 2.562557e-03	ci left: 5.422325e-01	ci right 5.436242e-01	k: 1069569	n:1970000
KS ci ratio: 1.232534e-01	ci left: 4.815626e-04	ci right 5.453013e-04	k: 1010	n:1970000
MIP   1970000 perm   1812 sec   (1087 perm/sec)   p_kst 5.126904e-04   p_cons 5.429284e-01   p_joint 1.012183e-03

Joint ci ratio: 8.177918e-02	ci left: 1.111681e-03	ci right 1.206960e-03	k: 2294	n:1980000
Cons ci ratio: 2.556091e-03	ci left: 5.422316e-01	ci right 5.436198e-01	k: 1074993	n:1980000
KS ci ratio: 1.231318e-01	ci left: 4.801095e-04	ci right 5.435885e-04	k: 1012	n:1980000
MIP   1980000 perm   1829 sec   (1083 perm/sec)   p_kst 5.111111e-04   p_cons 5.429258e-01   p_joint 1.158586e-03

Joint ci ratio: 8.156621e-02	ci left: 1.112001e-03	ci right 1.207048e-03	k: 2306	n:1990000
Cons ci ratio: 2.549587e-03	ci left: 5.422478e-01	ci right 5.436325e-01	k: 1080451	n:1990000
KS ci ratio: 1.228290e-01	ci left: 4.801321e-04	ci right 5.434467e-04	k: 1017	n:1990000
MIP   1990000 perm   1845 sec   (1078 perm/sec)   p_kst 5.110553e-04   p_cons 5.429402e-01   p_joint 1.158794e-03

Joint ci ratio: 8.133733e-02	ci left: 1.112809e-03	ci right 1.207645e-03	k: 2319	n:2000000
Cons ci ratio: 2.543144e-03	ci left: 5.422613e-01	ci right 5.436426e-01	k: 1085904	n:2000000
KS ci ratio: 1.224088e-01	ci left: 4.811241e-04	ci right 5.443368e-04	k: 1024	n:2000000
MIP   2000000 perm   1862 sec   (1074 perm/sec)   p_kst 5.120000e-04   p_cons 5.429520e-01   p_joint 1.159500e-03

Joint ci ratio: 8.123247e-02	ci left: 1.110197e-03	ci right 1.204682e-03	k: 2325	n:2010000
Cons ci ratio: 2.536753e-03	ci left: 5.422742e-01	ci right 5.436520e-01	k: 1091356	n:2010000
KS ci ratio: 1.222301e-01	ci left: 4.801773e-04	ci right 5.431668e-04	k: 1027	n:2010000
MIP   2010000 perm   1879 sec   (1070 perm/sec)   p_kst 5.109453e-04   p_cons 5.429632e-01   p_joint 1.156716e-03

Joint ci ratio: 8.095443e-02	ci left: 1.112461e-03	ci right 1.206800e-03	k: 2341	n:2020000
Cons ci ratio: 2.530533e-03	ci left: 5.422627e-01	ci right 5.436371e-01	k: 1096759	n:2020000
KS ci ratio: 1.215812e-01	ci left: 4.830797e-04	ci right 5.460894e-04	k: 1038	n:2020000
MIP   2020000 perm   1896 sec   (1065 perm/sec)   p_kst 5.138614e-04   p_cons 5.429500e-01   p_joint 1.158911e-03

Joint ci ratio: 8.073065e-02	ci left: 1.113256e-03	ci right 1.207389e-03	k: 2354	n:2030000
Cons ci ratio: 2.524336e-03	ci left: 5.422558e-01	ci right 5.436268e-01	k: 1102171	n:2030000
KS ci ratio: 1.212897e-01	ci left: 4.830883e-04	ci right 5.459371e-04	k: 1043	n:2030000
MIP   2030000 perm   1913 sec   (1061 perm/sec)   p_kst 5.137931e-04   p_cons 5.429414e-01   p_joint 1.159606e-03

Joint ci ratio: 8.038985e-02	ci left: 1.117405e-03	ci right 1.211471e-03	k: 2374	n:2040000
Cons ci ratio: 2.518103e-03	ci left: 5.422651e-01	ci right 5.436328e-01	k: 1107616	n:2040000
KS ci ratio: 1.208276e-01	ci left: 4.845230e-04	ci right 5.473012e-04	k: 1051	n:2040000
MIP   2040000 perm   1930 sec   (1057 perm/sec)   p_kst 5.151961e-04   p_cons 5.429490e-01   p_joint 1.163725e-03

Joint ci ratio: 8.020434e-02	ci left: 1.117212e-03	ci right 1.211035e-03	k: 2385	n:2050000
Cons ci ratio: 2.511827e-03	ci left: 5.422919e-01	ci right 5.436562e-01	k: 1113097	n:2050000
KS ci ratio: 1.205986e-01	ci left: 4.840518e-04	ci right 5.466415e-04	k: 1055	n:2050000
MIP   2050000 perm   1948 sec   (1052 perm/sec)   p_kst 5.146341e-04   p_cons 5.429741e-01   p_joint 1.163415e-03

Joint ci ratio: 7.997002e-02	ci left: 1.118449e-03	ci right 1.212089e-03	k: 2399	n:2060000
Cons ci ratio: 2.505938e-03	ci left: 5.422510e-01	ci right 5.436120e-01	k: 1118439	n:2060000
KS ci ratio: 1.202574e-01	ci left: 4.845269e-04	ci right 5.469882e-04	k: 1061	n:2060000
MIP   2060000 perm   1965 sec   (1048 perm/sec)   p_kst 5.150485e-04   p_cons 5.429316e-01   p_joint 1.164563e-03

Joint ci ratio: 7.973774e-02	ci left: 1.119674e-03	ci right 1.213131e-03	k: 2413	n:2070000
Cons ci ratio: 2.500090e-03	ci left: 5.422104e-01	ci right 5.435682e-01	k: 1123781	n:2070000
KS ci ratio: 1.200879e-01	ci left: 4.835919e-04	ci right 5.458386e-04	k: 1064	n:2070000
MIP   2070000 perm   1983 sec   (1044 perm/sec)   p_kst 5.140097e-04   p_cons 5.428894e-01   p_joint 1.165700e-03

Joint ci ratio: 7.955670e-02	ci left: 1.119474e-03	ci right 1.212693e-03	k: 2424	n:2080000
Cons ci ratio: 2.494116e-03	ci left: 5.422035e-01	ci right 5.435579e-01	k: 1129192	n:2080000
KS ci ratio: 1.198070e-01	ci left: 4.835987e-04	ci right 5.456903e-04	k: 1069	n:2080000
MIP   2080000 perm   2001 sec   (1040 perm/sec)   p_kst 5.139423e-04   p_cons 5.428808e-01   p_joint 1.165385e-03

Joint ci ratio: 7.931172e-02	ci left: 1.121152e-03	ci right 1.214210e-03	k: 2439	n:2090000
Cons ci ratio: 2.488130e-03	ci left: 5.422076e-01	ci right 5.435588e-01	k: 1134626	n:2090000
KS ci ratio: 1.195281e-01	ci left: 4.836055e-04	ci right 5.455433e-04	k: 1074	n:2090000
MIP   2090000 perm   2018 sec   (1035 perm/sec)   p_kst 5.138756e-04   p_cons 5.428833e-01   p_joint 1.166986e-03

Joint ci ratio: 7.913356e-02	ci left: 1.120948e-03	ci right 1.213770e-03	k: 2450	n:2100000
Cons ci ratio: 2.482086e-03	ci left: 5.422317e-01	ci right 5.435797e-01	k: 1140102	n:2100000
KS ci ratio: 1.193064e-01	ci left: 4.831505e-04	ci right 5.449071e-04	k: 1078	n:2100000
MIP   2100000 perm   2036 sec   (1031 perm/sec)   p_kst 5.133333e-04   p_cons 5.429057e-01   p_joint 1.166667e-03

Joint ci ratio: 7.886045e-02	ci left: 1.123533e-03	ci right 1.216233e-03	k: 2467	n:2110000
Cons ci ratio: 2.476297e-03	ci left: 5.422133e-01	ci right 5.435581e-01	k: 1145489	n:2110000
KS ci ratio: 1.190309e-01	ci left: 4.831597e-04	ci right 5.447649e-04	k: 1083	n:2110000
MIP   2110000 perm   2054 sec   (1027 perm/sec)   p_kst 5.132701e-04   p_cons 5.428858e-01   p_joint 1.169194e-03

Joint ci ratio: 7.859014e-02	ci left: 1.126095e-03	ci right 1.218673e-03	k: 2484	n:2120000
Cons ci ratio: 2.470421e-03	ci left: 5.422206e-01	ci right 5.435623e-01	k: 1150930	n:2120000
KS ci ratio: 1.186484e-01	ci left: 4.840844e-04	ci right 5.455952e-04	k: 1090	n:2120000
MIP   2120000 perm   2072 sec   (1023 perm/sec)   p_kst 5.141509e-04   p_cons 5.428915e-01   p_joint 1.171698e-03

Joint ci ratio: 7.838536e-02	ci left: 1.126791e-03	ci right 1.219175e-03	k: 2497	n:2130000
Cons ci ratio: 2.464676e-03	ci left: 5.422101e-01	ci right 5.435485e-01	k: 1156333	n:2130000
KS ci ratio: 1.184315e-01	ci left: 4.836340e-04	ci right 5.449673e-04	k: 1094	n:2130000
MIP   2130000 perm   2091 sec   (1019 perm/sec)   p_kst 5.136150e-04   p_cons 5.428793e-01   p_joint 1.172300e-03

Joint ci ratio: 7.815101e-02	ci left: 1.128398e-03	ci right 1.220624e-03	k: 2512	n:2140000
Cons ci ratio: 2.458914e-03	ci left: 5.422108e-01	ci right 5.435461e-01	k: 1161760	n:2140000
KS ci ratio: 1.180012e-01	ci left: 4.850018e-04	ci right 5.462695e-04	k: 1102	n:2140000
MIP   2140000 perm   2109 sec   (1015 perm/sec)   p_kst 5.149533e-04   p_cons 5.428785e-01   p_joint 1.173832e-03

Joint ci ratio: 8.334250e-02	ci left: 9.850590e-04	ci right 1.071178e-03	k: 2209	n:2150000
Cons ci ratio: 2.453147e-03	ci left: 5.422208e-01	ci right 5.435530e-01	k: 1167207	n:2150000
KS ci ratio: 1.176815e-01	ci left: 4.854544e-04	ci right 5.466017e-04	k: 1108	n:2150000
MIP   2150000 perm   2127 sec   (1011 perm/sec)   p_kst 5.153488e-04   p_cons 5.428870e-01   p_joint 1.027442e-03

Joint ci ratio: 8.315458e-02	ci left: 9.850318e-04	ci right 1.070945e-03	k: 2219	n:2160000
Cons ci ratio: 2.447471e-03	ci left: 5.422206e-01	ci right 5.435497e-01	k: 1172632	n:2160000
KS ci ratio: 1.173644e-01	ci left: 4.859031e-04	ci right 5.469305e-04	k: 1114	n:2160000
MIP   2160000 perm   2146 sec   (1007 perm/sec)   p_kst 5.157407e-04   p_cons 5.428852e-01   p_joint 1.027315e-03

Joint ci ratio: 8.296793e-02	ci left: 9.850051e-04	ci right 1.070713e-03	k: 2229	n:2170000
Cons ci ratio: 2.441941e-03	ci left: 5.421987e-01	ci right 5.435247e-01	k: 1178010	n:2170000
KS ci ratio: 1.172069e-01	ci left: 4.850058e-04	ci right 5.458331e-04	k: 1117	n:2170000
MIP   2170000 perm   2164 sec   (1003 perm/sec)   p_kst 5.147465e-04   p_cons 5.428618e-01   p_joint 1.027189e-03

Joint ci ratio: 8.281955e-02	ci left: 9.840803e-04	ci right 1.069548e-03	k: 2237	n:2180000
Cons ci ratio: 2.436326e-03	ci left: 5.422017e-01	ci right 5.435248e-01	k: 1183442	n:2180000
KS ci ratio: 1.170500e-01	ci left: 4.841168e-04	ci right 5.447458e-04	k: 1120	n:2180000
MIP   2180000 perm   2183 sec   (998 perm/sec)   p_kst 5.137615e-04   p_cons 5.428633e-01   p_joint 1.026147e-03

Joint ci ratio: 8.267197e-02	ci left: 9.831642e-04	ci right 1.068392e-03	k: 2245	n:2190000
Cons ci ratio: 2.430772e-03	ci left: 5.422002e-01	ci right 5.435202e-01	k: 1188864	n:2190000
KS ci ratio: 1.168938e-01	ci left: 4.832360e-04	ci right 5.436683e-04	k: 1123	n:2190000
MIP   2190000 perm   2202 sec   (995 perm/sec)   p_kst 5.127854e-04   p_cons 5.428603e-01   p_joint 1.025114e-03

Joint ci ratio: 8.248854e-02	ci left: 9.831468e-04	ci right 1.068175e-03	k: 2255	n:2200000
Cons ci ratio: 2.425231e-03	ci left: 5.422037e-01	ci right 5.435207e-01	k: 1194297	n:2200000
KS ci ratio: 1.166863e-01	ci left: 4.828046e-04	ci right 5.430683e-04	k: 1127	n:2200000
MIP   2200000 perm   2221 sec   (991 perm/sec)   p_kst 5.122727e-04   p_cons 5.428623e-01   p_joint 1.025000e-03

Joint ci ratio: 8.236093e-02	ci left: 9.818003e-04	ci right 1.066575e-03	k: 2262	n:2210000
Cons ci ratio: 2.419682e-03	ci left: 5.422167e-01	ci right 5.435307e-01	k: 1199751	n:2210000
KS ci ratio: 1.163259e-01	ci left: 4.836951e-04	ci right 5.438707e-04	k: 1134	n:2210000
MIP   2210000 perm   2239 sec   (987 perm/sec)   p_kst 5.131222e-04   p_cons 5.428738e-01   p_joint 1.023529e-03

Joint ci ratio: 8.208923e-02	ci left: 9.839957e-04	ci right 1.068666e-03	k: 2277	n:2220000
Cons ci ratio: 2.414265e-03	ci left: 5.422102e-01	ci right 5.435212e-01	k: 1205162	n:2220000
KS ci ratio: 1.161215e-01	ci left: 4.832657e-04	ci right 5.432750e-04	k: 1138	n:2220000
MIP   2220000 perm   2258 sec   (983 perm/sec)   p_kst 5.126126e-04   p_cons 5.428658e-01   p_joint 1.025676e-03

Joint ci ratio: 8.185594e-02	ci left: 9.852933e-04	ci right 1.069823e-03	k: 2290	n:2230000
Cons ci ratio: 2.408708e-03	ci left: 5.422401e-01	ci right 5.435482e-01	k: 1210654	n:2230000
KS ci ratio: 1.157663e-01	ci left: 4.841465e-04	ci right 5.440688e-04	k: 1145	n:2230000
MIP   2230000 perm   2276 sec   (980 perm/sec)   p_kst 5.134529e-04   p_cons 5.428942e-01   p_joint 1.026906e-03

Joint ci ratio: 8.164238e-02	ci left: 9.861423e-04	ci right 1.070513e-03	k: 2302	n:2240000
Cons ci ratio: 2.403297e-03	ci left: 5.422474e-01	ci right 5.435525e-01	k: 1216096	n:2240000
KS ci ratio: 1.156151e-01	ci left: 4.832857e-04	ci right 5.430179e-04	k: 1148	n:2240000
MIP   2240000 perm   2295 sec   (976 perm/sec)   p_kst 5.125000e-04   p_cons 5.429000e-01   p_joint 1.027679e-03

Joint ci ratio: 8.148334e-02	ci left: 9.856778e-04	ci right 1.069837e-03	k: 2311	n:2250000
Cons ci ratio: 2.397813e-03	ci left: 5.422773e-01	ci right 5.435795e-01	k: 1221589	n:2250000
KS ci ratio: 1.153644e-01	ci left: 4.832958e-04	ci right 5.428909e-04	k: 1153	n:2250000
MIP   2250000 perm   2313 sec   (973 perm/sec)   p_kst 5.124444e-04   p_cons 5.429284e-01   p_joint 1.027111e-03

Joint ci ratio: 8.127266e-02	ci left: 9.865181e-04	ci right 1.070521e-03	k: 2323	n:2260000
Cons ci ratio: 2.392452e-03	ci left: 5.422892e-01	ci right 5.435886e-01	k: 1227042	n:2260000
KS ci ratio: 1.150160e-01	ci left: 4.841654e-04	ci right 5.436753e-04	k: 1160	n:2260000
MIP   2260000 perm   2332 sec   (969 perm/sec)   p_kst 5.132743e-04   p_cons 5.429389e-01   p_joint 1.027876e-03

Joint ci ratio: 8.109838e-02	ci left: 9.864881e-04	ci right 1.070300e-03	k: 2333	n:2270000
Cons ci ratio: 2.387088e-03	ci left: 5.423090e-01	ci right 5.436055e-01	k: 1232513	n:2270000
KS ci ratio: 1.148677e-01	ci left: 4.833161e-04	ci right 5.426398e-04	k: 1163	n:2270000
MIP   2270000 perm   2351 sec   (966 perm/sec)   p_kst 5.123348e-04   p_cons 5.429573e-01   p_joint 1.027753e-03

Joint ci ratio: 8.087342e-02	ci left: 9.877477e-04	ci right 1.071423e-03	k: 2346	n:2280000
Cons ci ratio: 2.381653e-03	ci left: 5.423509e-01	ci right 5.436446e-01	k: 1238035	n:2280000
KS ci ratio: 1.146218e-01	ci left: 4.833264e-04	ci right 5.425157e-04	k: 1168	n:2280000
MIP   2280000 perm   2370 sec   (962 perm/sec)   p_kst 5.122807e-04   p_cons 5.429978e-01   p_joint 1.028947e-03

Joint ci ratio: 8.075314e-02	ci left: 9.864293e-04	ci right 1.069863e-03	k: 2353	n:2290000
Cons ci ratio: 2.376364e-03	ci left: 5.423698e-01	ci right 5.436606e-01	k: 1243505	n:2290000
KS ci ratio: 1.144263e-01	ci left: 4.829124e-04	ci right 5.419434e-04	k: 1172	n:2290000
MIP   2290000 perm   2390 sec   (958 perm/sec)   p_kst 5.117904e-04   p_cons 5.430153e-01   p_joint 1.027511e-03

Joint ci ratio: 8.056511e-02	ci left: 9.868267e-04	ci right 1.070090e-03	k: 2364	n:2300000
Cons ci ratio: 2.371213e-03	ci left: 5.423668e-01	ci right 5.436548e-01	k: 1248925	n:2300000
KS ci ratio: 1.141832e-01	ci left: 4.829246e-04	ci right 5.418231e-04	k: 1177	n:2300000
MIP   2300000 perm   2409 sec   (955 perm/sec)   p_kst 5.117391e-04   p_cons 5.430109e-01   p_joint 1.027826e-03

Joint ci ratio: 8.882425e-02	ci left: 8.049984e-04	ci right 8.802447e-04	k: 1945	n:2310000
Cons ci ratio: 2.366143e-03	ci left: 5.423539e-01	ci right 5.436391e-01	k: 1254322	n:2310000
KS ci ratio: 1.139898e-01	ci left: 4.825162e-04	ci right 5.412586e-04	k: 1181	n:2310000
MIP   2310000 perm   2428 sec   (951 perm/sec)   p_kst 5.112554e-04   p_cons 5.429965e-01   p_joint 8.419913e-04

Joint ci ratio: 8.027717e-02	ci left: 9.854997e-04	ci right 1.068340e-03	k: 2381	n:2320000
Cons ci ratio: 2.360969e-03	ci left: 5.423699e-01	ci right 5.436524e-01	k: 1259786	n:2320000
KS ci ratio: 1.137495e-01	ci left: 4.825302e-04	ci right 5.411421e-04	k: 1186	n:2320000
MIP   2320000 perm   2448 sec   (948 perm/sec)   p_kst 5.112069e-04   p_cons 5.430112e-01   p_joint 1.026293e-03

Joint ci ratio: 8.850651e-02	ci left: 8.039639e-04	ci right 8.788307e-04	k: 1959	n:2330000
Cons ci ratio: 2.355836e-03	ci left: 5.423841e-01	ci right 5.436638e-01	k: 1265246	n:2330000
KS ci ratio: 1.135583e-01	ci left: 4.821271e-04	ci right 5.405851e-04	k: 1190	n:2330000
MIP   2330000 perm   2467 sec   (944 perm/sec)   p_kst 5.107296e-04   p_cons 5.430240e-01   p_joint 8.407725e-04

Joint ci ratio: 8.830399e-02	ci left: 8.042893e-04	ci right 8.790062e-04	k: 1968	n:2340000
Cons ci ratio: 2.350607e-03	ci left: 5.424256e-01	ci right 5.437025e-01	k: 1270770	n:2340000
KS ci ratio: 1.133207e-01	ci left: 4.821429e-04	ci right 5.404723e-04	k: 1195	n:2340000
MIP   2340000 perm   2486 sec   (941 perm/sec)   p_kst 5.106838e-04   p_cons 5.430641e-01   p_joint 8.410256e-04

Joint ci ratio: 8.805831e-02	ci left: 8.054444e-04	ci right 8.800497e-04	k: 1979	n:2350000
Cons ci ratio: 2.345654e-03	ci left: 5.424156e-01	ci right 5.436898e-01	k: 1276174	n:2350000
KS ci ratio: 1.130375e-01	ci left: 4.825721e-04	ci right 5.407978e-04	k: 1201	n:2350000
MIP   2350000 perm   2505 sec   (938 perm/sec)   p_kst 5.110638e-04   p_cons 5.430528e-01   p_joint 8.421277e-04

Joint ci ratio: 8.783675e-02	ci left: 8.061757e-04	ci right 8.806512e-04	k: 1989	n:2360000
Cons ci ratio: 2.340628e-03	ci left: 5.424278e-01	ci right 5.436993e-01	k: 1281630	n:2360000
KS ci ratio: 1.128032e-01	ci left: 4.825862e-04	ci right 5.406848e-04	k: 1206	n:2360000
MIP   2360000 perm   2525 sec   (935 perm/sec)   p_kst 5.110169e-04   p_cons 5.430636e-01   p_joint 8.427966e-04

Joint ci ratio: 7.941500e-02	ci left: 9.862115e-04	ci right 1.068180e-03	k: 2433	n:2370000
Cons ci ratio: 2.335660e-03	ci left: 5.424343e-01	ci right 5.437031e-01	k: 1287073	n:2370000
KS ci ratio: 1.126633e-01	ci left: 4.817800e-04	ci right 5.397049e-04	k: 1209	n:2370000
MIP   2370000 perm   2544 sec   (931 perm/sec)   p_kst 5.101266e-04   p_cons 5.430688e-01   p_joint 1.026582e-03

Joint ci ratio: 7.925237e-02	ci left: 9.861861e-04	ci right 1.067977e-03	k: 2443	n:2380000
Cons ci ratio: 2.330809e-03	ci left: 5.424228e-01	ci right 5.436889e-01	k: 1292473	n:2380000
KS ci ratio: 1.124312e-01	ci left: 4.817975e-04	ci right 5.395972e-04	k: 1214	n:2380000
MIP   2380000 perm   2564 sec   (928 perm/sec)   p_kst 5.100840e-04   p_cons 5.430559e-01   p_joint 1.026471e-03

Joint ci ratio: 7.912302e-02	ci left: 9.853407e-04	ci right 1.066922e-03	k: 2451	n:2390000
Cons ci ratio: 2.325779e-03	ci left: 5.424556e-01	ci right 5.437191e-01	k: 1297979	n:2390000
KS ci ratio: 1.122006e-01	ci left: 4.818149e-04	ci right 5.394903e-04	k: 1219	n:2390000
MIP   2390000 perm   2584 sec   (925 perm/sec)   p_kst 5.100418e-04   p_cons 5.430874e-01   p_joint 1.025523e-03

Joint ci ratio: 7.901037e-02	ci left: 9.840941e-04	ci right 1.065451e-03	k: 2458	n:2400000
Cons ci ratio: 2.321061e-03	ci left: 5.424287e-01	ci right 5.436895e-01	k: 1303342	n:2400000
KS ci ratio: 1.120630e-01	ci left: 4.810222e-04	ci right 5.385275e-04	k: 1222	n:2400000
MIP   2400000 perm   2604 sec   (922 perm/sec)   p_kst 5.091667e-04   p_cons 5.430592e-01   p_joint 1.024167e-03

Joint ci ratio: 8.705298e-02	ci left: 8.040611e-04	ci right 8.776448e-04	k: 2025	n:2410000
Cons ci ratio: 2.316176e-03	ci left: 5.424439e-01	ci right 5.437021e-01	k: 1308806	n:2410000
KS ci ratio: 1.118346e-01	ci left: 4.810429e-04	ci right 5.384257e-04	k: 1227	n:2410000
MIP   2410000 perm   2624 sec   (919 perm/sec)   p_kst 5.091286e-04   p_cons 5.430730e-01   p_joint 8.402490e-04

Joint ci ratio: 8.690300e-02	ci left: 8.035682e-04	ci right 8.769736e-04	k: 2032	n:2420000
Cons ci ratio: 2.311331e-03	ci left: 5.424568e-01	ci right 5.437125e-01	k: 1314265	n:2420000
KS ci ratio: 1.115171e-01	ci left: 4.818669e-04	ci right 5.391741e-04	k: 1234	n:2420000
MIP   2420000 perm   2644 sec   (915 perm/sec)   p_kst 5.099174e-04   p_cons 5.430847e-01   p_joint 8.396694e-04

Joint ci ratio: 8.669003e-02	ci left: 8.042872e-04	ci right 8.775692e-04	k: 2042	n:2430000
Cons ci ratio: 2.306568e-03	ci left: 5.424586e-01	ci right 5.437117e-01	k: 1319697	n:2430000
KS ci ratio: 1.112921e-01	ci left: 4.818842e-04	ci right 5.390702e-04	k: 1239	n:2430000
MIP   2430000 perm   2664 sec   (912 perm/sec)   p_kst 5.098765e-04   p_cons 5.430852e-01   p_joint 8.403292e-04

Joint ci ratio: 8.647861e-02	ci left: 8.050006e-04	ci right 8.781596e-04	k: 2052	n:2440000
Cons ci ratio: 2.301945e-03	ci left: 5.424366e-01	ci right 5.436871e-01	k: 1325071	n:2440000
KS ci ratio: 1.109347e-01	ci left: 4.830968e-04	ci right 5.402306e-04	k: 1247	n:2440000
MIP   2440000 perm   2684 sec   (909 perm/sec)   p_kst 5.110656e-04   p_cons 5.430619e-01   p_joint 8.409836e-04

Joint ci ratio: 8.620603e-02	ci left: 8.069065e-04	ci right 8.799959e-04	k: 2065	n:2450000
Cons ci ratio: 2.297410e-03	ci left: 5.424017e-01	ci right 5.436496e-01	k: 1330413	n:2450000
KS ci ratio: 1.105368e-01	ci left: 4.846967e-04	ci right 5.418008e-04	k: 1256	n:2450000
MIP   2450000 perm   2705 sec   (906 perm/sec)   p_kst 5.126531e-04   p_cons 5.430257e-01   p_joint 8.428571e-04

Joint ci ratio: 7.800178e-02	ci left: 9.855974e-04	ci right 1.065991e-03	k: 2522	n:2460000
Cons ci ratio: 2.292719e-03	ci left: 5.424065e-01	ci right 5.436519e-01	k: 1335852	n:2460000
KS ci ratio: 1.103614e-01	ci left: 4.843075e-04	ci right 5.412692e-04	k: 1260	n:2460000
MIP   2460000 perm   2725 sec   (903 perm/sec)   p_kst 5.121951e-04   p_cons 5.430293e-01   p_joint 1.025203e-03

Joint ci ratio: 7.787845e-02	ci left: 9.847829e-04	ci right 1.064977e-03	k: 2530	n:2470000
Cons ci ratio: 2.287913e-03	ci left: 5.424425e-01	ci right 5.436853e-01	k: 1341368	n:2470000
KS ci ratio: 1.101432e-01	ci left: 4.843152e-04	ci right 5.411580e-04	k: 1265	n:2470000
MIP   2470000 perm   2746 sec   (900 perm/sec)   p_kst 5.121457e-04   p_cons 5.430640e-01   p_joint 1.024291e-03

Joint ci ratio: 8.566864e-02	ci left: 8.074041e-04	ci right 8.800599e-04	k: 2091	n:2480000
Cons ci ratio: 2.283225e-03	ci left: 5.424592e-01	ci right 5.436996e-01	k: 1346837	n:2480000
KS ci ratio: 1.098399e-01	ci left: 4.851073e-04	ci right 5.418761e-04	k: 1272	n:2480000
MIP   2480000 perm   2766 sec   (897 perm/sec)   p_kst 5.129032e-04   p_cons 5.430794e-01   p_joint 8.431452e-04

Joint ci ratio: 7.754215e-02	ci left: 9.855366e-04	ci right 1.065430e-03	k: 2552	n:2490000
Cons ci ratio: 2.278666e-03	ci left: 5.424537e-01	ci right 5.436916e-01	k: 1352251	n:2490000
KS ci ratio: 1.095820e-01	ci left: 4.855026e-04	ci right 5.421756e-04	k: 1278	n:2490000
MIP   2490000 perm   2786 sec   (894 perm/sec)   p_kst 5.132530e-04   p_cons 5.430727e-01   p_joint 1.024900e-03

Joint ci ratio: 7.728515e-02	ci left: 9.882629e-04	ci right 1.068100e-03	k: 2569	n:2500000
Cons ci ratio: 2.274023e-03	ci left: 5.424727e-01	ci right 5.437080e-01	k: 1357726	n:2500000
KS ci ratio: 1.092408e-01	ci left: 4.866730e-04	ci right 5.432944e-04	k: 1286	n:2500000
MIP   2500000 perm   2807 sec   (891 perm/sec)   p_kst 5.144000e-04   p_cons 5.430904e-01   p_joint 1.027600e-03

Joint ci ratio: 7.715020e-02	ci left: 9.878420e-04	ci right 1.067500e-03	k: 2578	n:2510000
Cons ci ratio: 2.269463e-03	ci left: 5.424795e-01	ci right 5.437124e-01	k: 1363171	n:2510000
KS ci ratio: 1.090715e-01	ci left: 4.862842e-04	ci right 5.427670e-04	k: 1290	n:2510000
MIP   2510000 perm   2828 sec   (888 perm/sec)   p_kst 5.139442e-04   p_cons 5.430960e-01   p_joint 1.027092e-03

Joint ci ratio: 8.504092e-02	ci left: 8.066271e-04	ci right 8.786548e-04	k: 2122	n:2520000
Cons ci ratio: 2.264996e-03	ci left: 5.424720e-01	ci right 5.437025e-01	k: 1368580	n:2520000
KS ci ratio: 1.090716e-01	ci left: 4.843545e-04	ci right 5.406132e-04	k: 1290	n:2520000
MIP   2520000 perm   2848 sec   (885 perm/sec)   p_kst 5.119048e-04   p_cons 5.430873e-01   p_joint 8.420635e-04

Joint ci ratio: 8.488115e-02	ci left: 8.065338e-04	ci right 8.784111e-04	k: 2130	n:2530000
Cons ci ratio: 2.260597e-03	ci left: 5.424551e-01	ci right 5.436831e-01	k: 1373965	n:2530000
KS ci ratio: 1.088610e-01	ci left: 4.843625e-04	ci right 5.405065e-04	k: 1295	n:2530000
MIP   2530000 perm   2870 sec   (882 perm/sec)   p_kst 5.118577e-04   p_cons 5.430692e-01   p_joint 8.418972e-04

Joint ci ratio: 8.460361e-02	ci left: 8.087535e-04	ci right 8.805814e-04	k: 2144	n:2540000
Cons ci ratio: 2.256196e-03	ci left: 5.424446e-01	ci right 5.436702e-01	k: 1379366	n:2540000
KS ci ratio: 1.085265e-01	ci left: 4.855195e-04	ci right 5.416137e-04	k: 1303	n:2540000
MIP   2540000 perm   2891 sec   (879 perm/sec)   p_kst 5.129921e-04   p_cons 5.430575e-01   p_joint 8.440945e-04

Joint ci ratio: 8.444629e-02	ci left: 8.086528e-04	ci right 8.803316e-04	k: 2152	n:2550000
Cons ci ratio: 2.251760e-03	ci left: 5.424476e-01	ci right 5.436708e-01	k: 1384801	n:2550000
KS ci ratio: 1.083190e-01	ci left: 4.855231e-04	ci right 5.415037e-04	k: 1308	n:2550000
MIP   2550000 perm   2912 sec   (876 perm/sec)   p_kst 5.129412e-04   p_cons 5.430592e-01   p_joint 8.439216e-04

Joint ci ratio: 8.432890e-02	ci left: 8.077883e-04	ci right 8.792861e-04	k: 2158	n:2560000
Cons ci ratio: 2.247377e-03	ci left: 5.424446e-01	ci right 5.436654e-01	k: 1390221	n:2560000
KS ci ratio: 1.081127e-01	ci left: 4.855268e-04	ci right 5.413944e-04	k: 1313	n:2560000
MIP   2560000 perm   2933 sec   (873 perm/sec)   p_kst 5.128906e-04   p_cons 5.430551e-01   p_joint 8.429687e-04

Joint ci ratio: 8.415367e-02	ci left: 8.080734e-04	ci right 8.794404e-04	k: 2167	n:2570000
Cons ci ratio: 2.242899e-03	ci left: 5.424682e-01	ci right 5.436866e-01	k: 1395709	n:2570000
KS ci ratio: 1.079076e-01	ci left: 4.855306e-04	ci right 5.412858e-04	k: 1318	n:2570000
MIP   2570000 perm   2954 sec   (870 perm/sec)   p_kst 5.128405e-04   p_cons 5.430774e-01   p_joint 8.431907e-04

Joint ci ratio: 8.413439e-02	ci left: 8.053207e-04	ci right 8.764275e-04	k: 2168	n:2580000
Cons ci ratio: 2.238380e-03	ci left: 5.425066e-01	ci right 5.437227e-01	k: 1401236	n:2580000
KS ci ratio: 1.079077e-01	ci left: 4.836486e-04	ci right 5.391879e-04	k: 1318	n:2580000
MIP   2580000 perm   2975 sec   (867 perm/sec)   p_kst 5.108527e-04   p_cons 5.431147e-01   p_joint 8.403101e-04

Joint ci ratio: 8.394109e-02	ci left: 8.059912e-04	ci right 8.769858e-04	k: 2178	n:2590000
Cons ci ratio: 2.233968e-03	ci left: 5.425271e-01	ci right 5.437408e-01	k: 1406717	n:2590000
KS ci ratio: 1.076631e-01	ci left: 4.840354e-04	ci right 5.394851e-04	k: 1324	n:2590000
MIP   2590000 perm   2995 sec   (865 perm/sec)   p_kst 5.111969e-04   p_cons 5.431340e-01   p_joint 8.409266e-04

Joint ci ratio: 8.380661e-02	ci left: 8.055271e-04	ci right 8.763615e-04	k: 2185	n:2600000
Cons ci ratio: 2.229734e-03	ci left: 5.425135e-01	ci right 5.437249e-01	k: 1412110	n:2600000
KS ci ratio: 1.074202e-01	ci left: 4.844194e-04	ci right 5.397799e-04	k: 1330	n:2600000
MIP   2600000 perm   3017 sec   (862 perm/sec)   p_kst 5.115385e-04   p_cons 5.431192e-01   p_joint 8.403846e-04

Joint ci ratio: 8.367277e-02	ci left: 8.050666e-04	ci right 8.757420e-04	k: 2192	n:2610000
Cons ci ratio: 2.225524e-03	ci left: 5.425000e-01	ci right 5.437091e-01	k: 1417503	n:2610000
KS ci ratio: 1.071788e-01	ci left: 4.848005e-04	ci right 5.400723e-04	k: 1336	n:2610000
MIP   2610000 perm   3038 sec   (859 perm/sec)   p_kst 5.118774e-04   p_cons 5.431046e-01   p_joint 8.398467e-04

Joint ci ratio: 8.353957e-02	ci left: 8.046097e-04	ci right 8.751270e-04	k: 2199	n:2620000
Cons ci ratio: 2.221143e-03	ci left: 5.425302e-01	ci right 5.437369e-01	k: 1423010	n:2620000
KS ci ratio: 1.070189e-01	ci left: 4.844360e-04	ci right 5.395785e-04	k: 1340	n:2620000
MIP   2620000 perm   3060 sec   (856 perm/sec)   p_kst 5.114504e-04   p_cons 5.431336e-01   p_joint 8.393130e-04

Joint ci ratio: 7.547167e-02	ci left: 9.860343e-04	ci right 1.063740e-03	k: 2694	n:2630000
Cons ci ratio: 2.216932e-03	ci left: 5.425278e-01	ci right 5.437322e-01	k: 1428432	n:2630000
KS ci ratio: 1.067406e-01	ci left: 4.851845e-04	ci right 5.402596e-04	k: 1347	n:2630000
MIP   2630000 perm   3082 sec   (853 perm/sec)   p_kst 5.121673e-04   p_cons 5.431300e-01   p_joint 1.024335e-03

Joint ci ratio: 7.530418e-02	ci left: 9.867591e-04	ci right 1.064342e-03	k: 2706	n:2640000
Cons ci ratio: 2.212633e-03	ci left: 5.425504e-01	ci right 5.437525e-01	k: 1433920	n:2640000
KS ci ratio: 1.065826e-01	ci left: 4.848214e-04	ci right 5.397687e-04	k: 1351	n:2640000
MIP   2640000 perm   3103 sec   (851 perm/sec)   p_kst 5.117424e-04   p_cons 5.431515e-01   p_joint 1.025000e-03

Joint ci ratio: 7.515163e-02	ci left: 9.871083e-04	ci right 1.064555e-03	k: 2717	n:2650000
Cons ci ratio: 2.208452e-03	ci left: 5.425521e-01	ci right 5.437520e-01	k: 1439353	n:2650000
KS ci ratio: 1.063861e-01	ci left: 4.848284e-04	ci right 5.396689e-04	k: 1356	n:2650000
MIP   2650000 perm   3125 sec   (848 perm/sec)   p_kst 5.116981e-04   p_cons 5.431521e-01   p_joint 1.025283e-03

Joint ci ratio: 7.508268e-02	ci left: 9.852418e-04	ci right 1.062468e-03	k: 2722	n:2660000
Cons ci ratio: 2.204306e-03	ci left: 5.425511e-01	ci right 5.437488e-01	k: 1444779	n:2660000
KS ci ratio: 1.062297e-01	ci left: 4.844695e-04	ci right 5.391838e-04	k: 1360	n:2660000
MIP   2660000 perm   3147 sec   (845 perm/sec)   p_kst 5.112782e-04   p_cons 5.431500e-01   p_joint 1.023308e-03

Joint ci ratio: 7.487666e-02	ci left: 9.870644e-04	ci right 1.064212e-03	k: 2737	n:2670000
Cons ci ratio: 2.200185e-03	ci left: 5.425498e-01	ci right 5.437452e-01	k: 1450204	n:2670000
KS ci ratio: 1.059575e-01	ci left: 4.852072e-04	ci right 5.398556e-04	k: 1367	n:2670000
MIP   2670000 perm   3169 sec   (843 perm/sec)   p_kst 5.119850e-04   p_cons 5.431476e-01   p_joint 1.025094e-03

Joint ci ratio: 7.476754e-02	ci left: 9.863105e-04	ci right 1.063282e-03	k: 2745	n:2680000
Cons ci ratio: 2.196053e-03	ci left: 5.425564e-01	ci right 5.437495e-01	k: 1455650	n:2680000
KS ci ratio: 1.057644e-01	ci left: 4.852130e-04	ci right 5.397563e-04	k: 1372	n:2680000
MIP   2680000 perm   3191 sec   (840 perm/sec)   p_kst 5.119403e-04   p_cons 5.431530e-01   p_joint 1.024254e-03

Joint ci ratio: 7.463178e-02	ci left: 9.862920e-04	ci right 1.063116e-03	k: 2755	n:2690000
Cons ci ratio: 2.191832e-03	ci left: 5.425881e-01	ci right 5.437791e-01	k: 1461164	n:2690000
KS ci ratio: 1.056491e-01	ci left: 4.844950e-04	ci right 5.388945e-04	k: 1375	n:2690000
MIP   2690000 perm   3213 sec   (837 perm/sec)   p_kst 5.111524e-04   p_cons 5.431836e-01   p_joint 1.024164e-03

Joint ci ratio: 7.445634e-02	ci left: 9.873641e-04	ci right 1.064083e-03	k: 2768	n:2700000
Cons ci ratio: 2.187852e-03	ci left: 5.425704e-01	ci right 5.437591e-01	k: 1466545	n:2700000
KS ci ratio: 1.053813e-01	ci left: 4.852247e-04	ci right 5.395596e-04	k: 1382	n:2700000
MIP   2700000 perm   3235 sec   (835 perm/sec)   p_kst 5.118519e-04   p_cons 5.431648e-01   p_joint 1.025185e-03

Joint ci ratio: 7.438928e-02	ci left: 9.855314e-04	ci right 1.062036e-03	k: 2773	n:2710000
Cons ci ratio: 2.183686e-03	ci left: 5.426001e-01	ci right 5.437866e-01	k: 1472054	n:2710000
KS ci ratio: 1.053433e-01	ci left: 4.837935e-04	ci right 5.379473e-04	k: 1383	n:2710000
MIP   2710000 perm   3257 sec   (832 perm/sec)   p_kst 5.103321e-04   p_cons 5.431934e-01   p_joint 1.023247e-03

Joint ci ratio: 7.416229e-02	ci left: 9.880421e-04	ci right 1.064497e-03	k: 2790	n:2720000
Cons ci ratio: 2.179855e-03	ci left: 5.425585e-01	ci right 5.437429e-01	k: 1477370	n:2720000
KS ci ratio: 1.049647e-01	ci left: 4.855946e-04	ci right 5.397427e-04	k: 1393	n:2720000
MIP   2720000 perm   3280 sec   (829 perm/sec)   p_kst 5.121324e-04   p_cons 5.431507e-01   p_joint 1.025735e-03

Joint ci ratio: 7.397693e-02	ci left: 9.894561e-04	ci right 1.065821e-03	k: 2804	n:2730000
Cons ci ratio: 2.175884e-03	ci left: 5.425539e-01	ci right 5.437361e-01	k: 1482786	n:2730000
KS ci ratio: 1.045901e-01	ci left: 4.873829e-04	ci right 5.415245e-04	k: 1403	n:2730000
MIP   2730000 perm   3302 sec   (827 perm/sec)   p_kst 5.139194e-04   p_cons 5.431451e-01   p_joint 1.027106e-03

Joint ci ratio: 7.380606e-02	ci left: 9.905018e-04	ci right 1.066763e-03	k: 2817	n:2740000
Cons ci ratio: 2.172042e-03	ci left: 5.425249e-01	ci right 5.437049e-01	k: 1488135	n:2740000
KS ci ratio: 1.044415e-01	ci left: 4.870259e-04	ci right 5.410462e-04	k: 1407	n:2740000
MIP   2740000 perm   3325 sec   (824 perm/sec)   p_kst 5.135036e-04   p_cons 5.431150e-01   p_joint 1.028102e-03

Joint ci ratio: 7.361035e-02	ci left: 9.922541e-04	ci right 1.068439e-03	k: 2832	n:2750000
Cons ci ratio: 2.168072e-03	ci left: 5.425299e-01	ci right 5.437078e-01	k: 1493577	n:2750000
KS ci ratio: 1.042196e-01	ci left: 4.873798e-04	ci right 5.413174e-04	k: 1413	n:2750000
MIP   2750000 perm   3347 sec   (822 perm/sec)   p_kst 5.138182e-04   p_cons 5.431189e-01   p_joint 1.029818e-03

Joint ci ratio: 6.882693e-02	ci left: 1.133502e-03	ci right 1.214652e-03	k: 3239	n:2760000
Cons ci ratio: 2.164114e-03	ci left: 5.425371e-01	ci right 5.437128e-01	k: 1499025	n:2760000
KS ci ratio: 1.041461e-01	ci left: 4.863196e-04	ci right 5.400997e-04	k: 1415	n:2760000
MIP   2760000 perm   3370 sec   (819 perm/sec)   p_kst 5.126812e-04   p_cons 5.431250e-01   p_joint 1.173551e-03

Joint ci ratio: 7.345506e-02	ci left: 9.893422e-04	ci right 1.065137e-03	k: 2844	n:2770000
Cons ci ratio: 2.160129e-03	ci left: 5.425554e-01	ci right 5.437290e-01	k: 1504504	n:2770000
KS ci ratio: 1.039993e-01	ci left: 4.859704e-04	ci right 5.396315e-04	k: 1419	n:2770000
MIP   2770000 perm   3392 sec   (817 perm/sec)   p_kst 5.122744e-04   p_cons 5.431422e-01   p_joint 1.026715e-03

Joint ci ratio: 6.862607e-02	ci left: 1.132065e-03	ci right 1.212865e-03	k: 3258	n:2780000
Cons ci ratio: 2.156308e-03	ci left: 5.425408e-01	ci right 5.437123e-01	k: 1509892	n:2780000
KS ci ratio: 1.037803e-01	ci left: 4.863245e-04	ci right 5.399047e-04	k: 1425	n:2780000
MIP   2780000 perm   3415 sec   (814 perm/sec)   p_kst 5.125899e-04   p_cons 5.431266e-01   p_joint 1.171942e-03

Joint ci ratio: 6.850007e-02	ci left: 1.132234e-03	ci right 1.212893e-03	k: 3270	n:2790000
Cons ci ratio: 2.152519e-03	ci left: 5.425239e-01	ci right 5.436933e-01	k: 1515273	n:2790000
KS ci ratio: 1.034542e-01	ci left: 4.877236e-04	ci right 5.412789e-04	k: 1434	n:2790000
MIP   2790000 perm   3437 sec   (812 perm/sec)   p_kst 5.139785e-04   p_cons 5.431086e-01   p_joint 1.172043e-03

Joint ci ratio: 6.835391e-02	ci left: 1.133105e-03	ci right 1.213646e-03	k: 3284	n:2800000
Cons ci ratio: 2.148740e-03	ci left: 5.425092e-01	ci right 5.436765e-01	k: 1520660	n:2800000
KS ci ratio: 1.032745e-01	ci left: 4.877213e-04	ci right 5.411776e-04	k: 1439	n:2800000
MIP   2800000 perm   3461 sec   (809 perm/sec)   p_kst 5.139286e-04   p_cons 5.430929e-01   p_joint 1.172857e-03

Joint ci ratio: 6.823977e-02	ci left: 1.132921e-03	ci right 1.213309e-03	k: 3295	n:2810000
Cons ci ratio: 2.144890e-03	ci left: 5.425156e-01	ci right 5.436808e-01	k: 1526106	n:2810000
KS ci ratio: 1.030243e-01	ci left: 4.884125e-04	ci right 5.418071e-04	k: 1446	n:2810000
MIP   2810000 perm   3483 sec   (807 perm/sec)   p_kst 5.145907e-04   p_cons 5.430982e-01   p_joint 1.172598e-03

Joint ci ratio: 6.814682e-02	ci left: 1.132040e-03	ci right 1.212252e-03	k: 3304	n:2820000
Cons ci ratio: 2.141092e-03	ci left: 5.425145e-01	ci right 5.436776e-01	k: 1531531	n:2820000
KS ci ratio: 1.029533e-01	ci left: 4.873715e-04	ci right 5.406132e-04	k: 1448	n:2820000
MIP   2820000 perm   3506 sec   (804 perm/sec)   p_kst 5.134752e-04   p_cons 5.430961e-01   p_joint 1.171631e-03

Joint ci ratio: 6.798241e-02	ci left: 1.133598e-03	ci right 1.213719e-03	k: 3320	n:2830000
Cons ci ratio: 2.137335e-03	ci left: 5.425088e-01	ci right 5.436699e-01	k: 1536943	n:2830000
KS ci ratio: 1.027408e-01	ci left: 4.877149e-04	ci right 5.408776e-04	k: 1454	n:2830000
MIP   2830000 perm   3529 sec   (802 perm/sec)   p_kst 5.137809e-04   p_cons 5.430894e-01   p_joint 1.173145e-03

Joint ci ratio: 6.783955e-02	ci left: 1.134452e-03	ci right 1.214458e-03	k: 3334	n:2840000
Cons ci ratio: 2.133646e-03	ci left: 5.424919e-01	ci right 5.436510e-01	k: 1542323	n:2840000
KS ci ratio: 1.025647e-01	ci left: 4.877130e-04	ci right 5.407789e-04	k: 1459	n:2840000
MIP   2840000 perm   3553 sec   (799 perm/sec)   p_kst 5.137324e-04   p_cons 5.430715e-01   p_joint 1.173944e-03

Joint ci ratio: 6.772795e-02	ci left: 1.134266e-03	ci right 1.214122e-03	k: 3345	n:2850000
Cons ci ratio: 2.129869e-03	ci left: 5.425000e-01	ci right 5.436571e-01	k: 1547774	n:2850000
KS ci ratio: 1.024946e-01	ci left: 4.866855e-04	ci right 5.396011e-04	k: 1461	n:2850000
MIP   2850000 perm   3576 sec   (797 perm/sec)   p_kst 5.126316e-04   p_cons 5.430786e-01   p_joint 1.173684e-03

Joint ci ratio: 6.763708e-02	ci left: 1.133393e-03	ci right 1.213077e-03	k: 3354	n:2860000
Cons ci ratio: 2.126142e-03	ci left: 5.425011e-01	ci right 5.436561e-01	k: 1553205	n:2860000
KS ci ratio: 1.024246e-01	ci left: 4.856651e-04	ci right 5.384317e-04	k: 1463	n:2860000
MIP   2860000 perm   3599 sec   (795 perm/sec)   p_kst 5.115385e-04   p_cons 5.430787e-01   p_joint 1.172727e-03

Joint ci ratio: 6.748635e-02	ci left: 1.134582e-03	ci right 1.214165e-03	k: 3369	n:2870000
Cons ci ratio: 2.122383e-03	ci left: 5.425141e-01	ci right 5.436670e-01	k: 1558670	n:2870000
KS ci ratio: 1.021111e-01	ci left: 4.870286e-04	ci right 5.397716e-04	k: 1472	n:2870000
MIP   2870000 perm   3622 sec   (792 perm/sec)   p_kst 5.128920e-04   p_cons 5.430906e-01   p_joint 1.173868e-03

Joint ci ratio: 6.734658e-02	ci left: 1.135422e-03	ci right 1.214892e-03	k: 3383	n:2880000
Cons ci ratio: 2.118772e-03	ci left: 5.424970e-01	ci right 5.436480e-01	k: 1564049	n:2880000
KS ci ratio: 1.019038e-01	ci left: 4.873677e-04	ci right 5.400339e-04	k: 1478	n:2880000
MIP   2880000 perm   3646 sec   (790 perm/sec)   p_kst 5.131944e-04   p_cons 5.430726e-01   p_joint 1.174653e-03

Joint ci ratio: 6.725723e-02	ci left: 1.134555e-03	ci right 1.213855e-03	k: 3392	n:2890000
Cons ci ratio: 2.114987e-03	ci left: 5.425255e-01	ci right 5.436744e-01	k: 1569559	n:2890000
KS ci ratio: 1.017663e-01	ci left: 4.870302e-04	ci right 5.395846e-04	k: 1482	n:2890000
MIP   2890000 perm   3669 sec   (788 perm/sec)   p_kst 5.128028e-04   p_cons 5.431000e-01   p_joint 1.173702e-03

Joint ci ratio: 6.716824e-02	ci left: 1.133694e-03	ci right 1.212825e-03	k: 3401	n:2900000
Cons ci ratio: 2.111206e-03	ci left: 5.425572e-01	ci right 5.437041e-01	k: 1575079	n:2900000
KS ci ratio: 1.014929e-01	ci left: 4.880393e-04	ci right 5.405526e-04	k: 1490	n:2900000
MIP   2900000 perm   3706 sec   (783 perm/sec)   p_kst 5.137931e-04   p_cons 5.431307e-01   p_joint 1.172759e-03

Joint ci ratio: 6.705008e-02	ci left: 1.133853e-03	ci right 1.212850e-03	k: 3413	n:2910000
Cons ci ratio: 2.107546e-03	ci left: 5.425653e-01	ci right 5.437103e-01	k: 1580531	n:2910000
KS ci ratio: 1.012893e-01	ci left: 4.883717e-04	ci right 5.408092e-04	k: 1496	n:2910000
MIP   2910000 perm   3729 sec   (780 perm/sec)   p_kst 5.140893e-04   p_cons 5.431378e-01   p_joint 1.172852e-03

Joint ci ratio: 6.693255e-02	ci left: 1.134010e-03	ci right 1.212875e-03	k: 3425	n:2920000
Cons ci ratio: 2.104111e-03	ci left: 5.425243e-01	ci right 5.436674e-01	k: 1585840	n:2920000
KS ci ratio: 1.011205e-01	ci left: 4.883682e-04	ci right 5.407128e-04	k: 1501	n:2920000
MIP   2920000 perm   3754 sec   (778 perm/sec)   p_kst 5.140411e-04   p_cons 5.430959e-01   p_joint 1.172945e-03

Joint ci ratio: 6.685459e-02	ci left: 1.132825e-03	ci right 1.211511e-03	k: 3433	n:2930000
Cons ci ratio: 2.100555e-03	ci left: 5.425164e-01	ci right 5.436575e-01	k: 1591245	n:2930000
KS ci ratio: 1.009862e-01	ci left: 4.880321e-04	ci right 5.402670e-04	k: 1505	n:2930000
MIP   2930000 perm   3801 sec   (771 perm/sec)   p_kst 5.136519e-04   p_cons 5.430870e-01   p_joint 1.171672e-03

Joint ci ratio: 6.670901e-02	ci left: 1.133988e-03	ci right 1.212578e-03	k: 3448	n:2940000
Cons ci ratio: 2.097034e-03	ci left: 5.425045e-01	ci right 5.436437e-01	k: 1596638	n:2940000
KS ci ratio: 1.008523e-01	ci left: 4.876984e-04	ci right 5.398242e-04	k: 1509	n:2940000
MIP   2940000 perm   3825 sec   (769 perm/sec)   p_kst 5.132653e-04   p_cons 5.430741e-01   p_joint 1.172789e-03

Joint ci ratio: 6.661253e-02	ci left: 1.133478e-03	ci right 1.211914e-03	k: 3458	n:2950000
Cons ci ratio: 2.093431e-03	ci left: 5.425164e-01	ci right 5.436537e-01	k: 1602101	n:2950000
KS ci ratio: 1.007857e-01	ci left: 4.867060e-04	ci right 5.386894e-04	k: 1511	n:2950000
MIP   2950000 perm   3849 sec   (767 perm/sec)   p_kst 5.122034e-04   p_cons 5.430851e-01   p_joint 1.172203e-03

Joint ci ratio: 6.648770e-02	ci left: 1.133967e-03	ci right 1.212284e-03	k: 3471	n:2960000
Cons ci ratio: 2.089840e-03	ci left: 5.425296e-01	ci right 5.436649e-01	k: 1607568	n:2960000
KS ci ratio: 1.006526e-01	ci left: 4.863790e-04	ci right 5.382549e-04	k: 1515	n:2960000
MIP   2960000 perm   3873 sec   (764 perm/sec)   p_kst 5.118243e-04   p_cons 5.430973e-01   p_joint 1.172635e-03

Joint ci ratio: 6.637309e-02	ci left: 1.134122e-03	ci right 1.212310e-03	k: 3483	n:2970000
Cons ci ratio: 2.086333e-03	ci left: 5.425272e-01	ci right 5.436606e-01	k: 1612989	n:2970000
KS ci ratio: 1.005201e-01	ci left: 4.860543e-04	ci right 5.378233e-04	k: 1519	n:2970000
MIP   2970000 perm   3897 sec   (762 perm/sec)   p_kst 5.114478e-04   p_cons 5.430939e-01   p_joint 1.172727e-03

Joint ci ratio: 6.625908e-02	ci left: 1.134277e-03	ci right 1.212335e-03	k: 3495	n:2980000
Cons ci ratio: 2.082935e-03	ci left: 5.425030e-01	ci right 5.436345e-01	k: 1618345	n:2980000
KS ci ratio: 1.003881e-01	ci left: 4.857318e-04	ci right 5.373945e-04	k: 1523	n:2980000
MIP   2980000 perm   3921 sec   (760 perm/sec)   p_kst 5.110738e-04   p_cons 5.430688e-01   p_joint 1.172819e-03

Joint ci ratio: 6.615509e-02	ci left: 1.134101e-03	ci right 1.212021e-03	k: 3506	n:2990000
Cons ci ratio: 2.079416e-03	ci left: 5.425117e-01	ci right 5.436413e-01	k: 1623799	n:2990000
KS ci ratio: 1.002567e-01	ci left: 4.854115e-04	ci right 5.369685e-04	k: 1527	n:2990000
MIP   2990000 perm   3946 sec   (758 perm/sec)   p_kst 5.107023e-04   p_cons 5.430766e-01   p_joint 1.172575e-03

Joint ci ratio: 6.605159e-02	ci left: 1.133927e-03	ci right 1.211708e-03	k: 3517	n:3000000
Cons ci ratio: 2.075960e-03	ci left: 5.425098e-01	ci right 5.436375e-01	k: 1629221	n:3000000
KS ci ratio: 1.000604e-01	ci left: 4.857434e-04	ci right 5.372287e-04	k: 1533	n:3000000
MIP   3000000 perm   3970 sec   (756 perm/sec)   p_kst 5.110000e-04   p_cons 5.430737e-01   p_joint 1.172333e-03

Joint ci ratio: 6.596729e-02	ci left: 1.133100e-03	ci right 1.210722e-03	k: 3526	n:3010000
Cons ci ratio: 2.072406e-03	ci left: 5.425354e-01	ci right 5.436612e-01	k: 1634726	n:3010000
KS ci ratio: 9.993022e-02	ci left: 4.854253e-04	ci right 5.368060e-04	k: 1537	n:3010000
MIP   3010000 perm   3996 sec   (753 perm/sec)   p_kst 5.106312e-04   p_cons 5.430983e-01   p_joint 1.171429e-03

Outputting figure to mutsig2_images.part000000000105/MIP.2_808_3010000_0.00051063_0.5431_0.0011714.png
                gene_name: MIP
               theta_stop: 0.100 
                    nperm: 3010000 
                     p_ks: 0.00051 
        ci_ks_bounds_left: 0.00049 
       ci_ks_bounds_right: 0.00054 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.0012 
     ci_joint_bounds_left: 0.0011 
    ci_joint_bounds_right: 0.0012 

Current progress: 93 percent done.
MIS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.401569e-02	ci left: 8.803248e-01	ci right 8.928490e-01	k: 8867	n:10000
Cons ci ratio: 1.069390e-02	ci left: 9.256491e-01	ci right 9.356983e-01	k: 9308	n:10000
KS ci ratio: 3.834130e-02	ci left: 5.011505e-01	ci right 5.208430e-01	k: 5110	n:10000
MIS12   10000 perm   1 sec   (6854 perm/sec)   p_kst 5.110000e-01   p_cons 9.308000e-01   p_joint 8.867000e-01

Outputting figure to mutsig2_images.part000000000105/MIS12.2_622_10000_0.511_0.9308_0.8867.png
                gene_name: MIS12
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 95 percent done.
MITD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.317272e-03	ci left: 9.528388e-01	ci right 9.608923e-01	k: 9570	n:10000
KS ci ratio: 4.736681e-02	ci left: 3.967519e-01	ci right 4.161027e-01	k: 4064	n:10000
MITD1   10000 perm   1 sec   (6914 perm/sec)   p_kst 4.064000e-01   p_cons 9.570000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000105/MITD1.2_778_10000_0.4064_0.957_1.png
                gene_name: MITD1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
MKKS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.765417e-02	ci left: 8.239157e-01	ci right 8.386908e-01	k: 8314	n:10000
Cons ci ratio: 3.334700e-02	ci left: 5.703546e-01	ci right 5.897987e-01	k: 5801	n:10000
KS ci ratio: 5.209730e-02	ci left: 3.519757e-01	ci right 3.709051e-01	k: 3614	n:10000
MKKS   10000 perm   2 sec   (6128 perm/sec)   p_kst 3.614000e-01   p_cons 5.801000e-01   p_joint 8.314000e-01

Outputting figure to mutsig2_images.part000000000105/MKKS.2_1729_10000_0.3614_0.5801_0.8314.png
                gene_name: MKKS
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 98 percent done.
MKL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.272828e-02	ci left: 7.397735e-01	ci right 7.568816e-01	k: 7484	n:10000
Cons ci ratio: 8.417606e-03	ci left: 9.517953e-01	ci right 9.599365e-01	k: 9560	n:10000
KS ci ratio: 3.586320e-02	ci left: 5.344770e-01	ci right 5.540972e-01	k: 5443	n:10000
MKL1   10000 perm   2 sec   (5596 perm/sec)   p_kst 5.443000e-01   p_cons 9.560000e-01   p_joint 7.484000e-01

Outputting figure to mutsig2_images.part000000000105/MKL1.2_2844_10000_0.5443_0.956_0.7484.png
                gene_name: MKL1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000105
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 105 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1542>
Subject: Job 9894016: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1542>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000106> was used as the working directory.
Started at Sat Oct  6 00:18:03 2012
Results reported at Sat Oct  6 00:31:25 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000106.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000106.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 106  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000106.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    923.73 sec.
    Max Memory :      3581 MB
    Max Swap   :      5907 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
106
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 106
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 106: processing genes 9467 - 9556
Calculating significance of each gene.
Using projection method.
9467	MKRN2	7.176847e-01
9468	MKRN3	5.805602e-01
9469	MKS1	8.940875e-01
9470	MKX	2.022766e-01
9471	MLANA	4.496859e-01
9472	MLC1	7.040060e-02
9473	MLEC	3.929113e-01
9474	MLF1	3.972903e-03
9475	MLF1IP	6.535059e-03
9476	MLF2	4.073584e-01
9477	MLH1	1.356808e-01
9478	MLH3	6.265858e-01
9479	MLKL	7.540046e-01
9480	MLL	6.928603e-01
9481	MLL2	9.828912e-01
9482	MLL3	8.442358e-01
9483	MLL4	7.061529e-01
9484	MLL5	4.992495e-01
9485	MLLT1	9.286605e-01
9486	MLLT10	5.175506e-02
9487	MLLT11	3.271077e-01
9488	MLLT3	9.185652e-01
9489	MLLT4	8.539334e-01
9490	MLLT6	8.079917e-01
9491	MLN	1
9492	MLNR	2.877512e-01
9493	MLPH	6.775857e-01
9494	MLST8	6.910255e-01
9495	MLX	6.187976e-02
9496	MLXIP	9.752369e-01
9497	MLXIPL	9.729667e-01
9498	MLYCD	6.679222e-01
9499	MMAA	2.355606e-01
9500	MMAB	4.193481e-01
9501	MMACHC	1
9502	MMADHC	6.025779e-01
9503	MMD	5.587427e-01
9504	MMD2	2.396576e-01
9505	MME	1.762505e-02
9506	MMEL1	9.809113e-01
9507	MMGT1	1
9508	MMP1	6.601889e-01
9509	MMP10	4.009092e-01
9510	MMP11	2.390743e-01
9511	MMP12	5.496206e-01
9512	MMP13	6.799790e-01
9513	MMP14	5.293873e-01
9514	MMP15	7.285041e-01
9515	MMP16	7.291396e-01
9516	MMP17	9.571080e-01
9517	MMP19	3.821663e-02
9518	MMP2	5.678003e-01
9519	MMP20	2.236836e-01
9520	MMP21	3.480620e-01
9521	MMP24	9.471086e-01
9522	MMP25	8.162031e-01
9523	MMP26	6.633654e-01
9524	MMP27	2.867384e-01
9525	MMP28	1
In gene MMP3 the following bins exceed PROBCAP:
    READ-AF-3400	categ 6	N = 1474    n = 1	mu =   6.90e-08
9526	MMP3	4.285986e-01
9527	MMP7	4.684020e-03
9528	MMP8	8.279442e-01
9529	MMP9	3.331960e-02
9530	MMRN1	6.702221e-01
9531	MMRN2	8.218208e-01
9532	MMS19	3.416875e-01
9533	MN1	9.732805e-01
9534	MNAT1	4.939646e-01
9535	MND1	1.495693e-01
9536	MNDA	1.004201e-01
9537	MNS1	5.774982e-02
9538	MNT	3.271585e-01
9539	MNX1	1
9540	MOAP1	8.150506e-01
9541	MOB2	1
9542	MOBKL1A	1.309068e-01
9543	MOBKL1B	5.871789e-01
9544	MOBKL2A	2.636577e-01
9545	MOBKL2B	1
9546	MOBKL2C	5.191376e-01
9547	MOBKL3	1.770819e-01
9548	MOBP	1
9549	MOCOS	3.105995e-01
9550	MOCS1	1
9551	MOCS2	1
9552	MOCS3	6.101832e-01
9553	MOG	1.864793e-01
9554	MOGAT1	5.559553e-01
9555	MOGAT2	6.534328e-01
9556	MOGAT3	3.444708e-01
Done

Running MutSig 2:
Scatter job 106: processing genes 9467 - 9556
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MLL
Processing conservation and coverage...
82% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.326580e-01	ci left: 7.494951e-02	ci right 8.569647e-02	k: 802	n:10000
Cons ci ratio: 1.018556e-01	ci left: 1.223911e-01	ci right 1.356258e-01	k: 1289	n:10000
KS ci ratio: 1.410433e-01	ci left: 6.662205e-02	ci right 7.682914e-02	k: 716	n:10000
MLL   10000 perm   5 sec   (2150 perm/sec)   p_kst 7.160000e-02   p_cons 1.289000e-01   p_joint 8.020000e-02

Joint ci ratio: 9.685466e-02	ci left: 7.202203e-02	ci right 7.940189e-02	k: 1513	n:20000
Cons ci ratio: 7.221701e-02	ci left: 1.237437e-01	ci right 1.330646e-01	k: 2567	n:20000
KS ci ratio: 9.516495e-02	ci left: 7.446665e-02	ci right 8.195653e-02	k: 1563	n:20000
MLL   20000 perm   13 sec   (1551 perm/sec)   p_kst 7.815000e-02   p_cons 1.283500e-01   p_joint 7.565000e-02

Outputting figure to mutsig2_images.part000000000106/MLL.21_12054_20000_0.07815_0.12835_0.07565.png
                gene_name: MLL
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.079 

Current progress: 2 percent done.
MLL2
Processing conservation and coverage...
59% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.563685e-02	ci left: 2.541932e-01	ci right 2.715451e-01	k: 2628	n:10000
Cons ci ratio: 3.348406e-02	ci left: 5.683489e-01	ci right 5.878056e-01	k: 5781	n:10000
KS ci ratio: 9.438752e-02	ci left: 1.401132e-01	ci right 1.540931e-01	k: 1470	n:10000
MLL2   10000 perm   5 sec   (1843 perm/sec)   p_kst 1.470000e-01   p_cons 5.781000e-01   p_joint 2.628000e-01

Outputting figure to mutsig2_images.part000000000106/MLL2.17_16830_10000_0.147_0.5781_0.2628.png
                gene_name: MLL2
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 3 percent done.
MLL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.664465e-02	ci left: 1.624881e-01	ci right 1.773047e-01	k: 1698	n:10000
Cons ci ratio: 6.183069e-02	ci left: 2.777507e-01	ci right 2.955737e-01	k: 2866	n:10000
KS ci ratio: 8.194893e-02	ci left: 1.785143e-01	ci right 1.938689e-01	k: 1861	n:10000
MLL5   10000 perm   3 sec   (3437 perm/sec)   p_kst 1.861000e-01   p_cons 2.866000e-01   p_joint 1.698000e-01

Outputting figure to mutsig2_images.part000000000106/MLL5.17_5677_10000_0.1861_0.2866_0.1698.png
                gene_name: MLL5
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 5 percent done.
MLL3
Processing conservation and coverage...
66% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.157470e-02	ci left: 2.794346e-01	ci right 2.972888e-01	k: 2883	n:10000
Cons ci ratio: 2.983895e-02	ci left: 6.235661e-01	ci right 6.425563e-01	k: 6331	n:10000
KS ci ratio: 9.518550e-02	ci left: 1.380551e-01	ci right 1.519524e-01	k: 1449	n:10000
MLL3   10000 perm   5 sec   (2122 perm/sec)   p_kst 1.449000e-01   p_cons 6.331000e-01   p_joint 2.883000e-01

Outputting figure to mutsig2_images.part000000000106/MLL3.16_14972_10000_0.1449_0.6331_0.2883.png
                gene_name: MLL3
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 6 percent done.
MLL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.067200e-02	ci left: 2.854779e-01	ci right 3.034419e-01	k: 2944	n:10000
Cons ci ratio: 4.686016e-02	ci left: 4.019315e-01	ci right 4.213200e-01	k: 4116	n:10000
KS ci ratio: 1.027259e-01	ci left: 1.205332e-01	ci right 1.336849e-01	k: 1270	n:10000
MLL4   10000 perm   4 sec   (2789 perm/sec)   p_kst 1.270000e-01   p_cons 4.116000e-01   p_joint 2.944000e-01

Joint ci ratio: 5.606796e-02	ci left: 1.908641e-01	ci right 2.019243e-01	k: 3927	n:20000
Cons ci ratio: 3.300179e-02	ci left: 4.067627e-01	ci right 4.204624e-01	k: 8272	n:20000
KS ci ratio: 7.192808e-02	ci left: 1.246298e-01	ci right 1.339783e-01	k: 2585	n:20000
MLL4   20000 perm   8 sec   (2645 perm/sec)   p_kst 1.292500e-01   p_cons 4.136000e-01   p_joint 1.963500e-01

Outputting figure to mutsig2_images.part000000000106/MLL4.11_8296_20000_0.12925_0.4136_0.19635.png
                gene_name: MLL4
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 8 percent done.
MMP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.073802e-02	ci left: 6.095991e-01	ci right 6.287314e-01	k: 6192	n:10000
Cons ci ratio: 4.162025e-02	ci left: 4.601778e-01	ci right 4.798397e-01	k: 4700	n:10000
KS ci ratio: 5.005077e-02	ci left: 3.705722e-01	ci right 3.896977e-01	k: 3801	n:10000
MMP9   10000 perm   2 sec   (5092 perm/sec)   p_kst 3.801000e-01   p_cons 4.700000e-01   p_joint 6.192000e-01

Outputting figure to mutsig2_images.part000000000106/MMP9.11_2176_10000_0.3801_0.47_0.6192.png
                gene_name: MMP9
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 10 percent done.
MMRN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.415757e-01	ci left: 6.613851e-02	ci right 7.631298e-02	k: 711	n:10000
Cons ci ratio: 4.962703e-01	ci left: 4.669135e-03	ci right 7.828899e-03	k: 61	n:10000
KS ci ratio: 2.470529e-02	ci left: 7.067471e-01	ci right 7.245272e-01	k: 7157	n:10000
MMRN1   10000 perm   2 sec   (4194 perm/sec)   p_kst 7.157000e-01   p_cons 6.100000e-03   p_joint 7.110000e-02

Joint ci ratio: 1.646773e-01	ci left: 2.527745e-02	ci right 2.986128e-02	k: 550	n:20000
Cons ci ratio: 3.871372e-01	ci left: 4.115134e-03	ci right 6.132872e-03	k: 101	n:20000
KS ci ratio: 1.742674e-02	ci left: 7.103989e-01	ci right 7.229380e-01	k: 14334	n:20000
MMRN1   20000 perm   5 sec   (3784 perm/sec)   p_kst 7.167000e-01   p_cons 5.050000e-03   p_joint 2.750000e-02

Joint ci ratio: 1.624756e-01	ci left: 1.748515e-02	ci right 2.060898e-02	k: 570	n:30000
Cons ci ratio: 3.043262e-01	ci left: 4.663813e-03	ci right 6.367437e-03	k: 164	n:30000
KS ci ratio: 1.425117e-02	ci left: 7.109269e-01	ci right 7.211646e-01	k: 21482	n:30000
MMRN1   30000 perm   8 sec   (3637 perm/sec)   p_kst 7.160667e-01   p_cons 5.466667e-03   p_joint 1.900000e-02

Joint ci ratio: 1.200806e-01	ci left: 2.438968e-02	ci right 2.752965e-02	k: 1037	n:40000
Cons ci ratio: 2.647682e-01	ci left: 4.728754e-03	ci right 6.194449e-03	k: 217	n:40000
KS ci ratio: 1.231891e-02	ci left: 7.123817e-01	ci right 7.212369e-01	k: 28673	n:40000
MMRN1   40000 perm   11 sec   (3539 perm/sec)   p_kst 7.168250e-01   p_cons 5.425000e-03   p_joint 2.592500e-02

Joint ci ratio: 1.085470e-01	ci left: 2.403851e-02	ci right 2.681696e-02	k: 1270	n:50000
Cons ci ratio: 2.353018e-01	ci left: 4.870588e-03	ci right 6.187821e-03	k: 275	n:50000
KS ci ratio: 1.099899e-02	ci left: 7.135714e-01	ci right 7.214833e-01	k: 35877	n:50000
MMRN1   50000 perm   14 sec   (3469 perm/sec)   p_kst 7.175400e-01   p_cons 5.500000e-03   p_joint 2.540000e-02

Joint ci ratio: 9.340612e-02	ci left: 2.718309e-02	ci right 2.986278e-02	k: 1710	n:60000
Cons ci ratio: 2.113626e-01	ci left: 5.097510e-03	ci right 6.317716e-03	k: 341	n:60000
KS ci ratio: 1.001318e-02	ci left: 7.150332e-01	ci right 7.222456e-01	k: 43119	n:60000
MMRN1   60000 perm   18 sec   (3407 perm/sec)   p_kst 7.186500e-01   p_cons 5.683333e-03   p_joint 2.850000e-02

Joint ci ratio: 9.058107e-02	ci left: 2.487558e-02	ci right 2.724964e-02	k: 1823	n:70000
Cons ci ratio: 1.997525e-01	ci left: 4.924832e-03	ci right 6.031054e-03	k: 382	n:70000
KS ci ratio: 9.395461e-03	ci left: 7.098337e-01	ci right 7.165486e-01	k: 49924	n:70000
MMRN1   70000 perm   21 sec   (3344 perm/sec)   p_kst 7.132000e-01   p_cons 5.457143e-03   p_joint 2.604286e-02

Joint ci ratio: 8.315847e-02	ci left: 2.590002e-02	ci right 2.815946e-02	k: 2161	n:80000
Cons ci ratio: 1.883093e-01	ci left: 4.880089e-03	ci right 5.906282e-03	k: 430	n:80000
KS ci ratio: 8.795639e-03	ci left: 7.097260e-01	ci right 7.160085e-01	k: 57030	n:80000
MMRN1   80000 perm   24 sec   (3289 perm/sec)   p_kst 7.128750e-01   p_cons 5.375000e-03   p_joint 2.701250e-02

Joint ci ratio: 8.826689e-02	ci left: 2.049706e-02	ci right 2.240063e-02	k: 1929	n:90000
Cons ci ratio: 1.790072e-01	ci left: 4.825468e-03	ci right 5.784620e-03	k: 476	n:90000
KS ci ratio: 8.566763e-03	ci left: 6.963702e-01	ci right 7.023725e-01	k: 62944	n:90000
MMRN1   90000 perm   28 sec   (3240 perm/sec)   p_kst 6.993778e-01   p_cons 5.288889e-03   p_joint 2.143333e-02

Joint ci ratio: 8.129977e-02	ci left: 2.179551e-02	ci right 2.365232e-02	k: 2271	n:100000
Cons ci ratio: 1.766523e-01	ci left: 4.467060e-03	ci right 5.342037e-03	k: 489	n:100000
KS ci ratio: 8.115320e-03	ci left: 6.971389e-01	ci right 7.028295e-01	k: 69999	n:100000
MMRN1   100000 perm   31 sec   (3190 perm/sec)   p_kst 6.999900e-01   p_cons 4.890000e-03   p_joint 2.271000e-02

Joint ci ratio: 7.994252e-02	ci left: 2.053508e-02	ci right 2.225392e-02	k: 2352	n:110000
Cons ci ratio: 1.673429e-01	ci left: 4.548166e-03	ci right 5.387352e-03	k: 545	n:110000
KS ci ratio: 7.750706e-03	ci left: 6.965621e-01	ci right 7.019910e-01	k: 76921	n:110000
MMRN1   110000 perm   35 sec   (3142 perm/sec)   p_kst 6.992818e-01   p_cons 4.954545e-03   p_joint 2.138182e-02

Joint ci ratio: 6.946665e-02	ci left: 2.495127e-02	ci right 2.675508e-02	k: 3101	n:120000
Cons ci ratio: 1.609860e-01	ci left: 4.520753e-03	ci right 5.320128e-03	k: 589	n:120000
KS ci ratio: 7.410422e-03	ci left: 6.972646e-01	ci right 7.024591e-01	k: 83984	n:120000
MMRN1   120000 perm   39 sec   (3099 perm/sec)   p_kst 6.998667e-01   p_cons 4.908333e-03   p_joint 2.584167e-02

Joint ci ratio: 7.066590e-02	ci left: 2.230533e-02	ci right 2.394681e-02	k: 3005	n:130000
Cons ci ratio: 1.550568e-01	ci left: 4.512858e-03	ci right 5.278715e-03	k: 635	n:130000
KS ci ratio: 7.135048e-03	ci left: 6.964597e-01	ci right 7.014545e-01	k: 90865	n:130000
MMRN1   130000 perm   42 sec   (3060 perm/sec)   p_kst 6.989615e-01   p_cons 4.884615e-03   p_joint 2.311538e-02

Joint ci ratio: 6.383543e-02	ci left: 2.539065e-02	ci right 2.707191e-02	k: 3671	n:140000
Cons ci ratio: 1.494081e-01	ci left: 4.527183e-03	ci right 5.264981e-03	k: 684	n:140000
KS ci ratio: 6.863910e-03	ci left: 6.972625e-01	ci right 7.020721e-01	k: 97954	n:140000
MMRN1   140000 perm   46 sec   (3020 perm/sec)   p_kst 6.996714e-01   p_cons 4.885714e-03   p_joint 2.622143e-02

Joint ci ratio: 5.873363e-02	ci left: 2.799229e-02	ci right 2.969266e-02	k: 4325	n:150000
Cons ci ratio: 1.446322e-01	ci left: 4.520757e-03	ci right 5.231923e-03	k: 730	n:150000
KS ci ratio: 6.631665e-03	ci left: 6.973130e-01	ci right 7.019593e-01	k: 104946	n:150000
MMRN1   150000 perm   50 sec   (2980 perm/sec)   p_kst 6.996400e-01   p_cons 4.866667e-03   p_joint 2.883333e-02

Joint ci ratio: 5.489918e-02	ci left: 3.003280e-02	ci right 3.173425e-02	k: 4940	n:160000
Cons ci ratio: 1.399254e-01	ci left: 4.539590e-03	ci right 5.228540e-03	k: 780	n:160000
KS ci ratio: 6.417971e-03	ci left: 6.975913e-01	ci right 7.020890e-01	k: 111975	n:160000
MMRN1   160000 perm   54 sec   (2941 perm/sec)   p_kst 6.998437e-01   p_cons 4.875000e-03   p_joint 3.087500e-02

Joint ci ratio: 5.467768e-02	ci left: 2.854405e-02	ci right 3.015441e-02	k: 4988	n:170000
Cons ci ratio: 1.358145e-01	ci left: 4.545170e-03	ci right 5.213063e-03	k: 828	n:170000
KS ci ratio: 6.225340e-03	ci left: 6.977269e-01	ci right 7.020898e-01	k: 118985	n:170000
MMRN1   170000 perm   59 sec   (2902 perm/sec)   p_kst 6.999118e-01   p_cons 4.870588e-03   p_joint 2.934118e-02

Joint ci ratio: 5.479706e-02	ci left: 2.688639e-02	ci right 2.840665e-02	k: 4975	n:180000
Cons ci ratio: 1.228159e-01	ci left: 5.282011e-03	ci right 5.978501e-03	k: 1012	n:180000
KS ci ratio: 6.048353e-03	ci left: 6.978993e-01	ci right 7.021387e-01	k: 126004	n:180000
MMRN1   180000 perm   63 sec   (2866 perm/sec)   p_kst 7.000222e-01   p_cons 5.622222e-03   p_joint 2.763889e-02

Joint ci ratio: 4.928216e-02	ci left: 3.143155e-02	ci right 3.302487e-02	k: 6122	n:190000
Cons ci ratio: 1.191641e-01	ci left: 5.325562e-03	ci right 6.005444e-03	k: 1075	n:190000
KS ci ratio: 5.886535e-03	ci left: 6.979918e-01	ci right 7.021179e-01	k: 133011	n:190000
MMRN1   190000 perm   67 sec   (2832 perm/sec)   p_kst 7.000579e-01   p_cons 5.657895e-03   p_joint 3.222105e-02

Joint ci ratio: 4.788964e-02	ci left: 3.163818e-02	ci right 3.319541e-02	k: 6482	n:200000
Cons ci ratio: 1.169613e-01	ci left: 5.258219e-03	ci right 5.916236e-03	k: 1116	n:200000
KS ci ratio: 5.734861e-03	ci left: 6.982367e-01	ci right 7.022575e-01	k: 140050	n:200000
MMRN1   200000 perm   72 sec   (2795 perm/sec)   p_kst 7.002500e-01   p_cons 5.580000e-03   p_joint 3.241000e-02

Joint ci ratio: 4.681785e-02	ci left: 3.154793e-02	ci right 3.306502e-02	k: 6783	n:210000
Cons ci ratio: 1.144792e-01	ci left: 5.234403e-03	ci right 5.874599e-03	k: 1165	n:210000
KS ci ratio: 5.597573e-03	ci left: 6.982162e-01	ci right 7.021402e-01	k: 147038	n:210000
MMRN1   210000 perm   76 sec   (2765 perm/sec)   p_kst 7.001810e-01   p_cons 5.547619e-03   p_joint 3.230000e-02

Joint ci ratio: 4.702170e-02	ci left: 2.990220e-02	ci right 3.134657e-02	k: 6736	n:220000
Cons ci ratio: 1.115959e-01	ci left: 5.265914e-03	ci right 5.892675e-03	k: 1226	n:220000
KS ci ratio: 5.468806e-03	ci left: 6.982669e-01	ci right 7.021006e-01	k: 154041	n:220000
MMRN1   220000 perm   80 sec   (2734 perm/sec)   p_kst 7.001864e-01   p_cons 5.572727e-03   p_joint 3.061818e-02

Joint ci ratio: 4.764741e-02	ci left: 2.790539e-02	ci right 2.927174e-02	k: 6574	n:230000
Cons ci ratio: 1.124417e-01	ci left: 4.960849e-03	ci right 5.556072e-03	k: 1208	n:230000
KS ci ratio: 5.343440e-03	ci left: 6.987149e-01	ci right 7.024627e-01	k: 161136	n:230000
MMRN1   230000 perm   85 sec   (2702 perm/sec)   p_kst 7.005913e-01   p_cons 5.252174e-03   p_joint 2.858261e-02

Joint ci ratio: 4.656346e-02	ci left: 2.801504e-02	ci right 2.935471e-02	k: 6883	n:240000
Cons ci ratio: 1.103192e-01	ci left: 4.944522e-03	ci right 5.525858e-03	k: 1255	n:240000
KS ci ratio: 5.233424e-03	ci left: 6.985545e-01	ci right 7.022240e-01	k: 168094	n:240000
MMRN1   240000 perm   90 sec   (2673 perm/sec)   p_kst 7.003917e-01   p_cons 5.229167e-03   p_joint 2.867917e-02

Joint ci ratio: 4.061895e-02	ci left: 3.518600e-02	ci right 3.664878e-02	k: 8978	n:250000
Cons ci ratio: 1.081041e-01	ci left: 4.949060e-03	ci right 5.518503e-03	k: 1307	n:250000
KS ci ratio: 5.127195e-03	ci left: 6.986321e-01	ci right 7.022273e-01	k: 175108	n:250000
MMRN1   250000 perm   95 sec   (2643 perm/sec)   p_kst 7.004320e-01   p_cons 5.228000e-03   p_joint 3.591200e-02

Joint ci ratio: 4.378963e-02	ci left: 2.924487e-02	ci right 3.055794e-02	k: 7773	n:260000
Cons ci ratio: 1.058610e-01	ci left: 4.968336e-03	ci right 5.527396e-03	k: 1363	n:260000
KS ci ratio: 5.025939e-03	ci left: 6.988084e-01	ci right 7.023332e-01	k: 182149	n:260000
MMRN1   260000 perm   99 sec   (2614 perm/sec)   p_kst 7.005731e-01   p_cons 5.242308e-03   p_joint 2.989615e-02

Joint ci ratio: 4.189714e-02	ci left: 3.074537e-02	ci right 3.206472e-02	k: 8478	n:270000
Cons ci ratio: 1.038991e-01	ci left: 4.971864e-03	ci right 5.520320e-03	k: 1415	n:270000
KS ci ratio: 4.933631e-03	ci left: 6.987015e-01	ci right 7.021608e-01	k: 189117	n:270000
MMRN1   270000 perm   104 sec   (2585 perm/sec)   p_kst 7.004333e-01   p_cons 5.240741e-03   p_joint 3.140000e-02

Joint ci ratio: 3.887002e-02	ci left: 3.436831e-02	ci right 3.573420e-02	k: 9813	n:280000
Cons ci ratio: 1.022527e-01	ci left: 4.954346e-03	ci right 5.491688e-03	k: 1461	n:280000
KS ci ratio: 4.847753e-03	ci left: 6.984705e-01	ci right 7.018682e-01	k: 196048	n:280000
MMRN1   280000 perm   109 sec   (2558 perm/sec)   p_kst 7.001714e-01   p_cons 5.217857e-03   p_joint 3.504643e-02

Joint ci ratio: 3.809600e-02	ci left: 3.455271e-02	ci right 3.589798e-02	k: 10214	n:290000
Cons ci ratio: 1.005816e-01	ci left: 4.948185e-03	ci right 5.475570e-03	k: 1510	n:290000
KS ci ratio: 4.763858e-03	ci left: 6.984631e-01	ci right 7.018018e-01	k: 203039	n:290000
MMRN1   290000 perm   115 sec   (2529 perm/sec)   p_kst 7.001345e-01   p_cons 5.206897e-03   p_joint 3.522069e-02

Joint ci ratio: 3.790078e-02	ci left: 3.377708e-02	ci right 3.508527e-02	k: 10328	n:300000
Cons ci ratio: 9.898991e-02	ci left: 4.942502e-03	ci right 5.460461e-03	k: 1559	n:300000
KS ci ratio: 4.686701e-03	ci left: 6.982297e-01	ci right 7.015131e-01	k: 209962	n:300000
MMRN1   300000 perm   120 sec   (2504 perm/sec)   p_kst 6.998733e-01   p_cons 5.196667e-03   p_joint 3.442667e-02

Outputting figure to mutsig2_images.part000000000106/MMRN1.11_3719_300000_0.69987_0.0051967_0.034427.png
                gene_name: MMRN1
               theta_stop: 0.099 
                    nperm: 300000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.0052 
      ci_cons_bounds_left: 0.0049 
     ci_cons_bounds_right: 0.0055 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.035 

Current progress: 11 percent done.
MME
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.335044e-02	ci left: 3.411431e-01	ci right 3.599440e-01	k: 3505	n:10000
Cons ci ratio: 4.151183e-02	ci left: 4.614759e-01	ci right 4.811408e-01	k: 4713	n:10000
KS ci ratio: 7.808098e-02	ci left: 1.933804e-01	ci right 2.091940e-01	k: 2012	n:10000
MME   10000 perm   2 sec   (5115 perm/sec)   p_kst 2.012000e-01   p_cons 4.713000e-01   p_joint 3.505000e-01

Outputting figure to mutsig2_images.part000000000106/MME.10_2341_10000_0.2012_0.4713_0.3505.png
                gene_name: MME
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 13 percent done.
MLH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.450598e-02	ci left: 8.730609e-01	ci right 8.859171e-01	k: 8796	n:10000
KS ci ratio: 7.529607e-03	ci left: 9.606854e-01	ci right 9.680409e-01	k: 9645	n:10000
MLH1   10000 perm   2 sec   (4559 perm/sec)   p_kst 9.645000e-01   p_cons 8.796000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MLH1.8_2347_10000_0.9645_0.8796_1.png
                gene_name: MLH1
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
MLH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.188344e-02	ci left: 7.539324e-01	ci right 7.707145e-01	k: 7624	n:10000
Cons ci ratio: 4.324244e-02	ci left: 4.412128e-01	ci right 4.608157e-01	k: 4510	n:10000
KS ci ratio: 3.064686e-02	ci left: 6.110055e-01	ci right 6.301242e-01	k: 6206	n:10000
MLH3   10000 perm   2 sec   (4027 perm/sec)   p_kst 6.206000e-01   p_cons 4.510000e-01   p_joint 7.624000e-01

Outputting figure to mutsig2_images.part000000000106/MLH3.8_4410_10000_0.6206_0.451_0.7624.png
                gene_name: MLH3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 16 percent done.
MLF1IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.629176e-02	ci left: 5.285691e-01	ci right 5.482085e-01	k: 5384	n:10000
Cons ci ratio: 6.545109e-02	ci left: 2.552813e-01	ci right 2.726564e-01	k: 2639	n:10000
KS ci ratio: 4.292950e-02	ci left: 4.448051e-01	ci right 4.644214e-01	k: 4546	n:10000
MLF1IP   10000 perm   2 sec   (5117 perm/sec)   p_kst 4.546000e-01   p_cons 2.639000e-01   p_joint 5.384000e-01

Outputting figure to mutsig2_images.part000000000106/MLF1IP.7_1309_10000_0.4546_0.2639_0.5384.png
                gene_name: MLF1IP
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 17 percent done.
MLLT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.325811e-02	ci left: 5.716584e-01	ci right 5.910942e-01	k: 5814	n:10000
Cons ci ratio: 1.954562e-02	ci left: 7.929363e-01	ci right 8.086881e-01	k: 8009	n:10000
KS ci ratio: 5.791351e-02	ci left: 3.050079e-01	ci right 3.233005e-01	k: 3141	n:10000
MLLT10   10000 perm   2 sec   (4220 perm/sec)   p_kst 3.141000e-01   p_cons 8.009000e-01   p_joint 5.814000e-01

Outputting figure to mutsig2_images.part000000000106/MLLT10.7_3172_10000_0.3141_0.8009_0.5814.png
                gene_name: MLLT10
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 19 percent done.
MLLT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.564171e-02	ci left: 2.036295e-01	ci right 2.197388e-01	k: 2116	n:10000
Cons ci ratio: 2.563048e-02	ci left: 6.914151e-01	ci right 7.094680e-01	k: 7005	n:10000
KS ci ratio: 1.175954e-01	ci left: 9.408985e-02	ci right 1.059443e-01	k: 999	n:10000
MLLT4   10000 perm   3 sec   (3981 perm/sec)   p_kst 9.990000e-02   p_cons 7.005000e-01   p_joint 2.116000e-01

Joint ci ratio: 6.282217e-02	ci left: 1.578065e-01	ci right 1.680917e-01	k: 3258	n:20000
Cons ci ratio: 1.825796e-02	ci left: 6.909800e-01	ci right 7.037626e-01	k: 13948	n:20000
KS ci ratio: 8.260454e-02	ci left: 9.700431e-02	ci right 1.054120e-01	k: 2023	n:20000
MLLT4   20000 perm   6 sec   (3593 perm/sec)   p_kst 1.011500e-01   p_cons 6.974000e-01   p_joint 1.629000e-01

Outputting figure to mutsig2_images.part000000000106/MLLT4.6_5734_20000_0.10115_0.6974_0.1629.png
                gene_name: MLLT4
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 21 percent done.
MMP19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
Cons ci ratio: 3.805205e-01	ci left: 8.505237e-03	ci right 1.258745e-02	k: 104	n:10000
KS ci ratio: 7.665324e-02	ci left: 1.992924e-01	ci right 2.152785e-01	k: 2072	n:10000
MMP19   10000 perm   2 sec   (5739 perm/sec)   p_kst 2.072000e-01   p_cons 1.040000e-02   p_joint 4.450000e-02

Joint ci ratio: 1.848072e-01	ci left: 1.996409e-02	ci right 2.407650e-02	k: 439	n:20000
Cons ci ratio: 2.730449e-01	ci left: 8.807415e-03	ci right 1.163770e-02	k: 203	n:20000
KS ci ratio: 5.452635e-02	ci left: 1.997202e-01	ci right 2.109656e-01	k: 4106	n:20000
MMP19   20000 perm   4 sec   (5144 perm/sec)   p_kst 2.053000e-01   p_cons 1.015000e-02   p_joint 2.195000e-02

Joint ci ratio: 1.133043e-01	ci left: 3.618883e-02	ci right 4.056781e-02	k: 1150	n:30000
Cons ci ratio: 2.225749e-01	ci left: 9.093958e-03	ci right 1.140237e-02	k: 306	n:30000
KS ci ratio: 4.459136e-02	ci left: 2.002455e-01	ci right 2.094117e-01	k: 6144	n:30000
MMP19   30000 perm   6 sec   (4923 perm/sec)   p_kst 2.048000e-01   p_cons 1.020000e-02   p_joint 3.833333e-02

Joint ci ratio: 1.078423e-01	ci left: 3.024808e-02	ci right 3.372030e-02	k: 1278	n:40000
Cons ci ratio: 1.937954e-01	ci left: 9.143308e-03	ci right 1.112878e-02	k: 404	n:40000
KS ci ratio: 3.869852e-02	ci left: 2.001842e-01	ci right 2.081088e-01	k: 8165	n:40000
MMP19   40000 perm   8 sec   (4767 perm/sec)   p_kst 2.041250e-01   p_cons 1.010000e-02   p_joint 3.195000e-02

Joint ci ratio: 1.126622e-01	ci left: 2.230661e-02	ci right 2.498909e-02	k: 1181	n:50000
Cons ci ratio: 1.760346e-01	ci left: 8.955101e-03	ci right 1.070251e-02	k: 490	n:50000
KS ci ratio: 3.470171e-02	ci left: 1.997797e-01	ci right 2.068548e-01	k: 10165	n:50000
MMP19   50000 perm   11 sec   (4603 perm/sec)   p_kst 2.033000e-01   p_cons 9.800000e-03   p_joint 2.362000e-02

Joint ci ratio: 9.295967e-02	ci left: 2.744371e-02	ci right 3.013546e-02	k: 1726	n:60000
Cons ci ratio: 1.590960e-01	ci left: 9.219296e-03	ci right 1.082863e-02	k: 600	n:60000
KS ci ratio: 3.171443e-02	ci left: 1.997213e-01	ci right 2.061741e-01	k: 12176	n:60000
MMP19   60000 perm   13 sec   (4463 perm/sec)   p_kst 2.029333e-01   p_cons 1.000000e-02   p_joint 2.876667e-02

Joint ci ratio: 9.544784e-02	ci left: 2.240440e-02	ci right 2.466391e-02	k: 1646	n:70000
Cons ci ratio: 1.507153e-01	ci left: 8.849648e-03	ci right 1.030572e-02	k: 669	n:70000
KS ci ratio: 2.970659e-02	ci left: 1.962324e-01	ci right 2.021640e-01	k: 13943	n:70000
MMP19   70000 perm   16 sec   (4361 perm/sec)   p_kst 1.991857e-01   p_cons 9.557143e-03   p_joint 2.351429e-02

Joint ci ratio: 7.493505e-02	ci left: 3.183421e-02	ci right 3.432480e-02	k: 2645	n:80000
Cons ci ratio: 1.452266e-01	ci left: 8.369226e-03	ci right 9.691747e-03	k: 721	n:80000
KS ci ratio: 2.779670e-02	ci left: 1.963251e-01	ci right 2.018717e-01	k: 15927	n:80000
MMP19   80000 perm   19 sec   (4277 perm/sec)   p_kst 1.990875e-01   p_cons 9.012500e-03   p_joint 3.306250e-02

Joint ci ratio: 6.524033e-02	ci left: 3.730703e-02	ci right 3.983393e-02	k: 3470	n:90000
Cons ci ratio: 1.366032e-01	ci left: 8.446980e-03	ci right 9.696081e-03	k: 815	n:90000
KS ci ratio: 2.623075e-02	ci left: 1.961968e-01	ci right 2.014226e-01	k: 17892	n:90000
MMP19   90000 perm   21 sec   (4204 perm/sec)   p_kst 1.988000e-01   p_cons 9.055556e-03   p_joint 3.855556e-02

Joint ci ratio: 7.959563e-02	ci left: 2.273663e-02	ci right 2.463114e-02	k: 2367	n:100000
Cons ci ratio: 1.340407e-01	ci left: 7.911300e-03	ci right 9.057483e-03	k: 847	n:100000
KS ci ratio: 2.486370e-02	ci left: 1.965989e-01	ci right 2.015586e-01	k: 19907	n:100000
MMP19   100000 perm   24 sec   (4093 perm/sec)   p_kst 1.990700e-01   p_cons 8.470000e-03   p_joint 2.367000e-02

Joint ci ratio: 6.697697e-02	ci left: 2.918757e-02	ci right 3.121911e-02	k: 3321	n:110000
Cons ci ratio: 1.271039e-01	ci left: 8.027559e-03	ci right 9.125859e-03	k: 942	n:110000
KS ci ratio: 2.367948e-02	ci left: 1.970785e-01	ci right 2.018101e-01	k: 21938	n:110000
MMP19   110000 perm   27 sec   (4031 perm/sec)   p_kst 1.994364e-01   p_cons 8.563636e-03   p_joint 3.019091e-02

Joint ci ratio: 6.538267e-02	ci left: 2.813160e-02	ci right 3.004125e-02	k: 3489	n:120000
Cons ci ratio: 1.220960e-01	ci left: 7.996405e-03	ci right 9.044221e-03	k: 1021	n:120000
KS ci ratio: 2.268763e-02	ci left: 1.969516e-01	ci right 2.014796e-01	k: 23905	n:120000
MMP19   120000 perm   30 sec   (3966 perm/sec)   p_kst 1.992083e-01   p_cons 8.508333e-03   p_joint 2.907500e-02

Joint ci ratio: 6.612290e-02	ci left: 2.545197e-02	ci right 2.720001e-02	k: 3421	n:130000
Cons ci ratio: 1.173150e-01	ci left: 8.015573e-03	ci right 9.021919e-03	k: 1106	n:130000
KS ci ratio: 2.179819e-02	ci left: 1.970318e-01	ci right 2.013817e-01	k: 25896	n:130000
MMP19   130000 perm   33 sec   (3901 perm/sec)   p_kst 1.992000e-01   p_cons 8.507692e-03   p_joint 2.631538e-02

Joint ci ratio: 6.905382e-02	ci left: 2.172246e-02	ci right 2.328311e-02	k: 3149	n:140000
Cons ci ratio: 1.136333e-01	ci left: 7.949385e-03	ci right 8.913998e-03	k: 1179	n:140000
KS ci ratio: 2.100342e-02	ci left: 1.971390e-01	ci right 2.013306e-01	k: 27892	n:140000
MMP19   140000 perm   36 sec   (3839 perm/sec)   p_kst 1.992286e-01   p_cons 8.421429e-03   p_joint 2.249286e-02

Joint ci ratio: 7.704153e-02	ci left: 1.631258e-02	ci right 1.762618e-02	k: 2544	n:150000
Cons ci ratio: 1.092277e-01	ci left: 8.048095e-03	ci right 8.984385e-03	k: 1276	n:150000
KS ci ratio: 2.027487e-02	ci left: 1.974669e-01	ci right 2.015181e-01	k: 29923	n:150000
MMP19   150000 perm   40 sec   (3779 perm/sec)   p_kst 1.994867e-01   p_cons 8.506667e-03   p_joint 1.696000e-02

Joint ci ratio: 6.476903e-02	ci left: 2.165584e-02	ci right 2.311154e-02	k: 3580	n:160000
Cons ci ratio: 1.056472e-01	ci left: 8.080318e-03	ci right 8.987626e-03	k: 1364	n:160000
KS ci ratio: 1.963910e-02	ci left: 1.974010e-01	ci right 2.013224e-01	k: 31897	n:160000
MMP19   160000 perm   43 sec   (3723 perm/sec)   p_kst 1.993563e-01   p_cons 8.525000e-03   p_joint 2.237500e-02

Joint ci ratio: 7.015307e-02	ci left: 1.740220e-02	ci right 1.867314e-02	k: 3065	n:170000
Cons ci ratio: 1.027185e-01	ci left: 8.057597e-03	ci right 8.935759e-03	k: 1443	n:170000
KS ci ratio: 1.905084e-02	ci left: 1.974912e-01	ci right 2.012956e-01	k: 33896	n:170000
MMP19   170000 perm   46 sec   (3666 perm/sec)   p_kst 1.993882e-01   p_cons 8.488235e-03   p_joint 1.802941e-02

Joint ci ratio: 6.827677e-02	ci left: 1.736895e-02	ci right 1.860220e-02	k: 3236	n:180000
Cons ci ratio: 9.942979e-02	ci left: 8.135236e-03	ci right 8.991816e-03	k: 1540	n:180000
KS ci ratio: 1.851697e-02	ci left: 1.974954e-01	ci right 2.011921e-01	k: 35881	n:180000
MMP19   180000 perm   50 sec   (3610 perm/sec)   p_kst 1.993389e-01   p_cons 8.555556e-03   p_joint 1.797778e-02

Outputting figure to mutsig2_images.part000000000106/MMP19.6_1563_180000_0.19934_0.0085556_0.017978.png
                gene_name: MMP19
               theta_stop: 0.099 
                    nperm: 180000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.0086 
      ci_cons_bounds_left: 0.0081 
     ci_cons_bounds_right: 0.0090 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 22 percent done.
MNDA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.570440e-02	ci left: 1.655342e-01	ci right 1.804568e-01	k: 1729	n:10000
Cons ci ratio: 4.981450e-03	ci left: 9.815599e-01	ci right 9.865523e-01	k: 9842	n:10000
KS ci ratio: 1.554271e-01	ci left: 5.513502e-02	ci right 6.452344e-02	k: 597	n:10000
MNDA   10000 perm   2 sec   (6049 perm/sec)   p_kst 5.970000e-02   p_cons 9.842000e-01   p_joint 1.729000e-01

Joint ci ratio: 7.408212e-02	ci left: 1.182322e-01	ci right 1.273777e-01	k: 2455	n:20000
Cons ci ratio: 3.367679e-03	ci left: 9.837459e-01	ci right 9.871108e-01	k: 19710	n:20000
KS ci ratio: 1.102002e-01	ci left: 5.621205e-02	ci right 6.281674e-02	k: 1189	n:20000
MNDA   20000 perm   4 sec   (5197 perm/sec)   p_kst 5.945000e-02   p_cons 9.855000e-01   p_joint 1.227500e-01

Joint ci ratio: 5.365741e-02	ci left: 1.469656e-01	ci right 1.551021e-01	k: 4530	n:30000
Cons ci ratio: 2.764162e-03	ci left: 9.839083e-01	ci right 9.866632e-01	k: 29560	n:30000
KS ci ratio: 8.928937e-02	ci left: 5.766500e-02	ci right 6.308720e-02	k: 1810	n:30000
MNDA   30000 perm   6 sec   (4979 perm/sec)   p_kst 6.033333e-02   p_cons 9.853333e-01   p_joint 1.510000e-01

Outputting figure to mutsig2_images.part000000000106/MNDA.6_1248_30000_0.060333_0.98533_0.151.png
                gene_name: MNDA
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 24 percent done.
MNS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.541083e-02	ci left: 6.950453e-01	ci right 7.130357e-01	k: 7041	n:10000
Cons ci ratio: 2.520369e-02	ci left: 6.984744e-01	ci right 7.164046e-01	k: 7075	n:10000
KS ci ratio: 4.285168e-02	ci left: 4.457032e-01	ci right 4.653227e-01	k: 4555	n:10000
MNS1   10000 perm   2 sec   (5113 perm/sec)   p_kst 4.555000e-01   p_cons 7.075000e-01   p_joint 7.041000e-01

Outputting figure to mutsig2_images.part000000000106/MNS1.6_1528_10000_0.4555_0.7075_0.7041.png
                gene_name: MNS1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 25 percent done.
MLC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.015712e-02	ci left: 3.695773e-01	ci right 3.886931e-01	k: 3791	n:10000
Cons ci ratio: 1.439627e-02	ci left: 8.746972e-01	ci right 8.874798e-01	k: 8812	n:10000
KS ci ratio: 6.211914e-02	ci left: 2.758690e-01	ci right 2.936566e-01	k: 2847	n:10000
MLC1   10000 perm   2 sec   (5977 perm/sec)   p_kst 2.847000e-01   p_cons 8.812000e-01   p_joint 3.791000e-01

Outputting figure to mutsig2_images.part000000000106/MLC1.5_1178_10000_0.2847_0.8812_0.3791.png
                gene_name: MLC1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 27 percent done.
MMP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.212491e-02	ci left: 7.498858e-01	ci right 7.667635e-01	k: 7584	n:10000
Cons ci ratio: 3.126828e-02	ci left: 6.014639e-01	ci right 6.206713e-01	k: 6111	n:10000
KS ci ratio: 3.600800e-02	ci left: 5.324742e-01	ci right 5.521012e-01	k: 5423	n:10000
MMP2   10000 perm   2 sec   (5330 perm/sec)   p_kst 5.423000e-01   p_cons 6.111000e-01   p_joint 7.584000e-01

Outputting figure to mutsig2_images.part000000000106/MMP2.5_2042_10000_0.5423_0.6111_0.7584.png
                gene_name: MMP2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 29 percent done.
MMP21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.346716e-02	ci left: 2.133931e-01	ci right 2.297694e-01	k: 2215	n:10000
Cons ci ratio: 1.203560e-01	ci left: 9.009981e-02	ci right 1.017368e-01	k: 958	n:10000
KS ci ratio: 3.546029e-02	ci left: 5.400858e-01	ci right 5.596852e-01	k: 5499	n:10000
MMP21   10000 perm   2 sec   (5238 perm/sec)   p_kst 5.499000e-01   p_cons 9.580000e-02   p_joint 2.215000e-01

Joint ci ratio: 5.332765e-02	ci left: 2.069962e-01	ci right 2.183874e-01	k: 4253	n:20000
Cons ci ratio: 8.633138e-02	ci left: 8.940144e-02	ci right 9.751720e-02	k: 1868	n:20000
KS ci ratio: 2.515445e-02	ci left: 5.414213e-01	ci right 5.552646e-01	k: 10967	n:20000
MMP21   20000 perm   4 sec   (4654 perm/sec)   p_kst 5.483500e-01   p_cons 9.340000e-02   p_joint 2.126500e-01

Outputting figure to mutsig2_images.part000000000106/MMP21.5_1738_20000_0.54835_0.0934_0.21265.png
                gene_name: MMP21
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 30 percent done.
MMP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.536921e-02	ci left: 8.599833e-01	ci right 8.734023e-01	k: 8668	n:10000
Cons ci ratio: 1.516905e-02	ci left: 8.630465e-01	ci right 8.763374e-01	k: 8698	n:10000
KS ci ratio: 3.187005e-02	ci left: 5.923277e-01	ci right 6.116129e-01	k: 6020	n:10000
MMP7   10000 perm   2 sec   (6009 perm/sec)   p_kst 6.020000e-01   p_cons 8.698000e-01   p_joint 8.668000e-01

Outputting figure to mutsig2_images.part000000000106/MMP7.5_828_10000_0.602_0.8698_0.8668.png
                gene_name: MMP7
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 32 percent done.
MMS19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.323371e-02	ci left: 2.144784e-01	ci right 2.308835e-01	k: 2226	n:10000
Cons ci ratio: 4.732758e-02	ci left: 3.971502e-01	ci right 4.165041e-01	k: 4068	n:10000
KS ci ratio: 1.025412e-01	ci left: 1.209243e-01	ci right 1.340936e-01	k: 1274	n:10000
MMS19   10000 perm   2 sec   (4884 perm/sec)   p_kst 1.274000e-01   p_cons 4.068000e-01   p_joint 2.226000e-01

Joint ci ratio: 6.162877e-02	ci left: 1.630396e-01	ci right 1.734570e-01	k: 3364	n:20000
Cons ci ratio: 3.354868e-02	ci left: 3.988341e-01	ci right 4.124933e-01	k: 8113	n:20000
KS ci ratio: 7.313472e-02	ci left: 1.209876e-01	ci right 1.302216e-01	k: 2511	n:20000
MMS19   20000 perm   5 sec   (4407 perm/sec)   p_kst 1.255500e-01   p_cons 4.056500e-01   p_joint 1.682000e-01

Outputting figure to mutsig2_images.part000000000106/MMS19.5_3217_20000_0.12555_0.40565_0.1682.png
                gene_name: MMS19
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 33 percent done.
MOCOS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.449446e-02	ci left: 3.316070e-01	ci right 3.502858e-01	k: 3409	n:10000
Cons ci ratio: 1.220526e-01	ci left: 8.776567e-02	ci right 9.927239e-02	k: 934	n:10000
KS ci ratio: 3.644533e-02	ci left: 5.264667e-01	ci right 5.461122e-01	k: 5363	n:10000
MOCOS   10000 perm   2 sec   (5087 perm/sec)   p_kst 5.363000e-01   p_cons 9.340000e-02   p_joint 3.409000e-01

Joint ci ratio: 4.531278e-02	ci left: 2.660896e-01	ci right 2.784767e-01	k: 5445	n:20000
Cons ci ratio: 8.418691e-02	ci left: 9.366788e-02	ci right 1.019495e-01	k: 1955	n:20000
KS ci ratio: 2.693761e-02	ci left: 5.072966e-01	ci right 5.211992e-01	k: 10285	n:20000
MOCOS   20000 perm   4 sec   (4541 perm/sec)   p_kst 5.142500e-01   p_cons 9.775000e-02   p_joint 2.722500e-01

Outputting figure to mutsig2_images.part000000000106/MOCOS.5_2727_20000_0.51425_0.09775_0.27225.png
                gene_name: MOCOS
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 35 percent done.
MLF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.907736e-02	ci left: 3.798263e-01	ci right 3.990382e-01	k: 3894	n:10000
Cons ci ratio: 3.173722e-02	ci left: 5.943354e-01	ci right 6.136040e-01	k: 6040	n:10000
KS ci ratio: 8.732659e-02	ci left: 1.603269e-01	ci right 1.750672e-01	k: 1676	n:10000
MLF1   10000 perm   2 sec   (5846 perm/sec)   p_kst 1.676000e-01   p_cons 6.040000e-01   p_joint 3.894000e-01

Outputting figure to mutsig2_images.part000000000106/MLF1.4_835_10000_0.1676_0.604_0.3894.png
                gene_name: MLF1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 37 percent done.
MLX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.460418e-01	ci left: 6.227288e-02	ci right 7.218104e-02	k: 671	n:10000
Cons ci ratio: 3.960612e-01	ci left: 7.782754e-03	ci right 1.171078e-02	k: 96	n:10000
KS ci ratio: 4.216718e-02	ci left: 4.536882e-01	ci right 4.733331e-01	k: 4635	n:10000
MLX   10000 perm   2 sec   (6142 perm/sec)   p_kst 4.635000e-01   p_cons 9.600000e-03   p_joint 6.710000e-02

Joint ci ratio: 1.183488e-01	ci left: 4.891463e-02	ci right 5.511643e-02	k: 1039	n:20000
Cons ci ratio: 2.671533e-01	ci left: 9.227203e-03	ci right 1.211771e-02	k: 212	n:20000
KS ci ratio: 2.969057e-02	ci left: 4.587173e-01	ci right 4.725927e-01	k: 9313	n:20000
MLX   20000 perm   4 sec   (5396 perm/sec)   p_kst 4.656500e-01   p_cons 1.060000e-02   p_joint 5.195000e-02

Joint ci ratio: 1.040978e-01	ci left: 4.277918e-02	ci right 4.750942e-02	k: 1353	n:30000
Cons ci ratio: 2.244287e-01	ci left: 8.936542e-03	ci right 1.122650e-02	k: 301	n:30000
KS ci ratio: 2.417725e-02	ci left: 4.613412e-01	ci right 4.726652e-01	k: 14010	n:30000
MLX   30000 perm   6 sec   (5088 perm/sec)   p_kst 4.670000e-01   p_cons 1.003333e-02   p_joint 4.510000e-02

Joint ci ratio: 7.996247e-02	ci left: 5.440430e-02	ci right 5.896033e-02	k: 2266	n:40000
Cons ci ratio: 1.970149e-01	ci left: 8.834070e-03	ci right 1.078808e-02	k: 391	n:40000
KS ci ratio: 2.102377e-02	ci left: 4.600773e-01	ci right 4.698778e-01	k: 18599	n:40000
MLX   40000 perm   8 sec   (4855 perm/sec)   p_kst 4.649750e-01   p_cons 9.775000e-03   p_joint 5.665000e-02

Joint ci ratio: 6.329759e-02	ci left: 6.898059e-02	ci right 7.350934e-02	k: 3561	n:50000
Cons ci ratio: 1.763978e-01	ci left: 8.916851e-03	ci right 1.066077e-02	k: 488	n:50000
KS ci ratio: 1.891644e-02	ci left: 4.576424e-01	ci right 4.664020e-01	k: 23101	n:50000
MLX   50000 perm   11 sec   (4684 perm/sec)   p_kst 4.620200e-01   p_cons 9.760000e-03   p_joint 7.122000e-02

Joint ci ratio: 5.721817e-02	ci left: 7.047037e-02	ci right 7.463776e-02	k: 4352	n:60000
Cons ci ratio: 1.605871e-01	ci left: 9.043231e-03	ci right 1.063805e-02	k: 589	n:60000
KS ci ratio: 1.726269e-02	ci left: 4.581876e-01	ci right 4.661827e-01	k: 27731	n:60000
MLX   60000 perm   13 sec   (4546 perm/sec)   p_kst 4.621833e-01   p_cons 9.816667e-03   p_joint 7.253333e-02

Joint ci ratio: 6.460137e-02	ci left: 4.835481e-02	ci right 5.159691e-02	k: 3497	n:70000
Cons ci ratio: 1.491498e-01	ci left: 9.042210e-03	ci right 1.051314e-02	k: 683	n:70000
KS ci ratio: 1.598810e-02	ci left: 4.583012e-01	ci right 4.657019e-01	k: 32340	n:70000
MLX   70000 perm   16 sec   (4410 perm/sec)   p_kst 4.620000e-01   p_cons 9.757143e-03   p_joint 4.995714e-02

Joint ci ratio: 5.662843e-02	ci left: 5.490993e-02	ci right 5.812232e-02	k: 4520	n:80000
Cons ci ratio: 1.377236e-01	ci left: 9.334159e-03	ci right 1.072672e-02	k: 801	n:80000
KS ci ratio: 1.495667e-02	ci left: 4.585030e-01	ci right 4.654248e-01	k: 36957	n:80000
MLX   80000 perm   19 sec   (4323 perm/sec)   p_kst 4.619625e-01   p_cons 1.001250e-02   p_joint 5.650000e-02

Joint ci ratio: 5.500822e-02	ci left: 5.194000e-02	ci right 5.488887e-02	k: 4806	n:90000
Cons ci ratio: 1.290013e-01	ci left: 9.500038e-03	ci right 1.082071e-02	k: 913	n:90000
KS ci ratio: 1.411508e-02	ci left: 4.582166e-01	ci right 4.647414e-01	k: 41533	n:90000
MLX   90000 perm   21 sec   (4246 perm/sec)   p_kst 4.614778e-01   p_cons 1.014444e-02   p_joint 5.340000e-02

Joint ci ratio: 5.478120e-02	ci left: 4.737406e-02	ci right 5.005220e-02	k: 4870	n:100000
Cons ci ratio: 1.217505e-01	ci left: 9.634966e-03	ci right 1.089368e-02	k: 1025	n:100000
KS ci ratio: 1.338451e-02	ci left: 4.586163e-01	ci right 4.648059e-01	k: 46171	n:100000
MLX   100000 perm   24 sec   (4130 perm/sec)   p_kst 4.617100e-01   p_cons 1.025000e-02   p_joint 4.870000e-02

Joint ci ratio: 5.444242e-02	ci left: 4.378240e-02	ci right 4.624166e-02	k: 4950	n:110000
Cons ci ratio: 1.169037e-01	ci left: 9.526334e-03	ci right 1.071789e-02	k: 1112	n:110000
KS ci ratio: 1.277264e-02	ci left: 4.583324e-01	ci right 4.642332e-01	k: 50741	n:110000
MLX   110000 perm   27 sec   (4067 perm/sec)   p_kst 4.612818e-01   p_cons 1.010909e-02   p_joint 4.500000e-02

Joint ci ratio: 5.479792e-02	ci left: 3.977811e-02	ci right 4.202747e-02	k: 4907	n:120000
Cons ci ratio: 1.118887e-01	ci left: 9.558165e-03	ci right 1.069903e-02	k: 1214	n:120000
KS ci ratio: 1.224075e-02	ci left: 4.579766e-01	ci right 4.636253e-01	k: 55296	n:120000
MLX   120000 perm   30 sec   (3991 perm/sec)   p_kst 4.608000e-01   p_cons 1.011667e-02   p_joint 4.089167e-02

Joint ci ratio: 4.909155e-02	ci left: 4.560493e-02	ci right 4.790765e-02	k: 6077	n:130000
Cons ci ratio: 1.073860e-01	ci left: 9.600999e-03	ci right 1.069794e-02	k: 1318	n:130000
KS ci ratio: 1.177439e-02	ci left: 4.575031e-01	ci right 4.629295e-01	k: 59828	n:130000
MLX   130000 perm   33 sec   (3930 perm/sec)   p_kst 4.602154e-01   p_cons 1.013846e-02   p_joint 4.674615e-02

Joint ci ratio: 4.931334e-02	ci left: 4.211975e-02	ci right 4.425636e-02	k: 6045	n:140000
Cons ci ratio: 1.043162e-01	ci left: 9.464525e-03	ci right 1.051306e-02	k: 1397	n:140000
KS ci ratio: 1.135298e-02	ci left: 4.573009e-01	ci right 4.625293e-01	k: 64388	n:140000
MLX   140000 perm   36 sec   (3870 perm/sec)   p_kst 4.599143e-01   p_cons 9.978571e-03   p_joint 4.317857e-02

Joint ci ratio: 4.724567e-02	ci left: 4.284235e-02	ci right 4.492200e-02	k: 6581	n:150000
Cons ci ratio: 1.010128e-01	ci left: 9.437631e-03	ci right 1.044811e-02	k: 1490	n:150000
KS ci ratio: 1.096525e-02	ci left: 4.575153e-01	ci right 4.625663e-01	k: 69006	n:150000
MLX   150000 perm   39 sec   (3810 perm/sec)   p_kst 4.600400e-01   p_cons 9.933333e-03   p_joint 4.387333e-02

Joint ci ratio: 4.753222e-02	ci left: 3.980498e-02	ci right 4.174921e-02	k: 6523	n:160000
Cons ci ratio: 9.809852e-02	ci left: 9.396263e-03	ci right 1.037162e-02	k: 1580	n:160000
KS ci ratio: 1.065285e-02	ci left: 4.559249e-01	ci right 4.608141e-01	k: 73339	n:160000
MLX   160000 perm   43 sec   (3749 perm/sec)   p_kst 4.583687e-01   p_cons 9.875000e-03   p_joint 4.076875e-02

Outputting figure to mutsig2_images.part000000000106/MLX.4_929_160000_0.45837_0.009875_0.040769.png
                gene_name: MLX
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.0099 
      ci_cons_bounds_left: 0.0094 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.042 

Current progress: 38 percent done.
MMAA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.938332e-02	ci left: 2.943978e-01	ci right 3.125168e-01	k: 3034	n:10000
Cons ci ratio: 2.316878e-02	ci left: 7.323953e-01	ci right 7.496640e-01	k: 7411	n:10000
KS ci ratio: 6.844278e-02	ci left: 2.384731e-01	ci right 2.554745e-01	k: 2469	n:10000
MMAA   10000 perm   2 sec   (5882 perm/sec)   p_kst 2.469000e-01   p_cons 7.411000e-01   p_joint 3.034000e-01

Outputting figure to mutsig2_images.part000000000106/MMAA.4_1281_10000_0.2469_0.7411_0.3034.png
                gene_name: MMAA
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 40 percent done.
MMP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.086781e-02	ci left: 4.692660e-01	ci right 4.889461e-01	k: 4791	n:10000
Cons ci ratio: 5.809187e-03	ci left: 9.755703e-01	ci right 9.813463e-01	k: 9786	n:10000
KS ci ratio: 5.197341e-02	ci left: 3.530692e-01	ci right 3.720109e-01	k: 3625	n:10000
MMP10   10000 perm   2 sec   (5499 perm/sec)   p_kst 3.625000e-01   p_cons 9.786000e-01   p_joint 4.791000e-01

Outputting figure to mutsig2_images.part000000000106/MMP10.4_1471_10000_0.3625_0.9786_0.4791.png
                gene_name: MMP10
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 41 percent done.
MMP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.874988e-02	ci left: 6.407601e-01	ci right 6.595523e-01	k: 6502	n:10000
Cons ci ratio: 3.163782e-02	ci left: 5.958412e-01	ci right 6.150973e-01	k: 6055	n:10000
KS ci ratio: 3.395993e-02	ci left: 5.614305e-01	ci right 5.809280e-01	k: 5712	n:10000
MMP11   10000 perm   2 sec   (5842 perm/sec)   p_kst 5.712000e-01   p_cons 6.055000e-01   p_joint 6.502000e-01

Outputting figure to mutsig2_images.part000000000106/MMP11.4_1499_10000_0.5712_0.6055_0.6502.png
                gene_name: MMP11
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 43 percent done.
MMP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.150284e-02	ci left: 7.603080e-01	ci right 7.769353e-01	k: 7687	n:10000
Cons ci ratio: 3.257287e-02	ci left: 5.817902e-01	ci right 6.011565e-01	k: 5915	n:10000
KS ci ratio: 2.735360e-02	ci left: 6.632026e-01	ci right 6.816968e-01	k: 6725	n:10000
MMP14   10000 perm   2 sec   (5600 perm/sec)   p_kst 6.725000e-01   p_cons 5.915000e-01   p_joint 7.687000e-01

Outputting figure to mutsig2_images.part000000000106/MMP14.4_1789_10000_0.6725_0.5915_0.7687.png
                gene_name: MMP14
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 44 percent done.
MMP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.254876e-01	ci left: 8.329513e-02	ci right 9.454569e-02	k: 888	n:10000
Cons ci ratio: 4.870791e-02	ci left: 3.834095e-01	ci right 4.026528e-01	k: 3930	n:10000
KS ci ratio: 1.736201e-01	ci left: 4.427577e-02	ci right 5.278970e-02	k: 484	n:10000
MMP15   10000 perm   2 sec   (5685 perm/sec)   p_kst 4.840000e-02   p_cons 3.930000e-01   p_joint 8.880000e-02

Joint ci ratio: 9.222233e-02	ci left: 7.901657e-02	ci right 8.670521e-02	k: 1656	n:20000
Cons ci ratio: 3.433701e-02	ci left: 3.877172e-01	ci right 4.013134e-01	k: 7890	n:20000
KS ci ratio: 1.248127e-01	ci left: 4.405941e-02	ci right 4.997318e-02	k: 939	n:20000
MMP15   20000 perm   4 sec   (5021 perm/sec)   p_kst 4.695000e-02   p_cons 3.945000e-01   p_joint 8.280000e-02

Joint ci ratio: 7.599359e-02	ci left: 7.836242e-02	ci right 8.458558e-02	k: 2443	n:30000
Cons ci ratio: 2.903813e-02	ci left: 3.723755e-01	ci right 3.833815e-01	k: 11336	n:30000
KS ci ratio: 1.023678e-01	ci left: 4.420966e-02	ci right 4.901197e-02	k: 1397	n:30000
MMP15   30000 perm   6 sec   (4796 perm/sec)   p_kst 4.656667e-02   p_cons 3.778667e-01   p_joint 8.143333e-02

Joint ci ratio: 6.996051e-02	ci left: 7.022332e-02	ci right 7.533891e-02	k: 2910	n:40000
Cons ci ratio: 2.524563e-02	ci left: 3.712997e-01	ci right 3.808183e-01	k: 15042	n:40000
KS ci ratio: 8.918167e-02	ci left: 4.401654e-02	ci right 4.814968e-02	k: 1842	n:40000
MMP15   40000 perm   9 sec   (4637 perm/sec)   p_kst 4.605000e-02   p_cons 3.760500e-01   p_joint 7.275000e-02

Outputting figure to mutsig2_images.part000000000106/MMP15.4_2050_40000_0.04605_0.37605_0.07275.png
                gene_name: MMP15
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.075 

Current progress: 46 percent done.
MMP27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.196797e-02	ci left: 7.525160e-01	ci right 7.693318e-01	k: 7610	n:10000
KS ci ratio: 1.500802e-02	ci left: 8.654978e-01	ci right 8.786846e-01	k: 8722	n:10000
MMP27   10000 perm   2 sec   (5470 perm/sec)   p_kst 8.722000e-01   p_cons 7.610000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MMP27.4_1582_10000_0.8722_0.761_1.png
                gene_name: MMP27
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
MMRN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.881241e-02	ci left: 2.984627e-01	ci right 3.166495e-01	k: 3075	n:10000
Cons ci ratio: 5.179401e-02	ci left: 3.546598e-01	ci right 3.736194e-01	k: 3641	n:10000
KS ci ratio: 1.067577e-01	ci left: 1.124225e-01	ci right 1.252005e-01	k: 1187	n:10000
MMRN2   10000 perm   2 sec   (4873 perm/sec)   p_kst 1.187000e-01   p_cons 3.641000e-01   p_joint 3.075000e-01

Joint ci ratio: 6.069853e-02	ci left: 1.672867e-01	ci right 1.778086e-01	k: 3450	n:20000
Cons ci ratio: 3.673870e-02	ci left: 3.560322e-01	ci right 3.694077e-01	k: 7254	n:20000
KS ci ratio: 7.563504e-02	ci left: 1.139039e-01	ci right 1.229073e-01	k: 2367	n:20000
MMRN2   20000 perm   4 sec   (4540 perm/sec)   p_kst 1.183500e-01   p_cons 3.627000e-01   p_joint 1.725000e-01

Outputting figure to mutsig2_images.part000000000106/MMRN2.4_2878_20000_0.11835_0.3627_0.1725.png
                gene_name: MMRN2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 49 percent done.
MKRN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.314211e-02	ci left: 5.733634e-01	ci right 5.927881e-01	k: 5831	n:10000
Cons ci ratio: 7.287598e-02	ci left: 2.161558e-01	ci right 2.326051e-01	k: 2243	n:10000
KS ci ratio: 2.797044e-02	ci left: 6.532365e-01	ci right 6.718687e-01	k: 6626	n:10000
MKRN3   10000 perm   1 sec   (6668 perm/sec)   p_kst 6.626000e-01   p_cons 2.243000e-01   p_joint 5.831000e-01

Outputting figure to mutsig2_images.part000000000106/MKRN3.3_1528_10000_0.6626_0.2243_0.5831.png
                gene_name: MKRN3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 51 percent done.
MKX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.004742e-01	ci left: 1.254236e-01	ci right 1.387915e-01	k: 1320	n:10000
Cons ci ratio: 1.031447e-01	ci left: 1.196532e-01	ci right 1.327654e-01	k: 1261	n:10000
KS ci ratio: 1.246431e-01	ci left: 8.436377e-02	ci right 9.567638e-02	k: 899	n:10000
MKX   10000 perm   2 sec   (6481 perm/sec)   p_kst 8.990000e-02   p_cons 1.261000e-01   p_joint 1.320000e-01

Joint ci ratio: 8.310798e-02	ci left: 9.592472e-02	ci right 1.042920e-01	k: 2001	n:20000
Cons ci ratio: 7.242749e-02	ci left: 1.231038e-01	ci right 1.324047e-01	k: 2554	n:20000
KS ci ratio: 9.105888e-02	ci left: 8.092569e-02	ci right 8.869552e-02	k: 1695	n:20000
MKX   20000 perm   4 sec   (5509 perm/sec)   p_kst 8.475000e-02   p_cons 1.277000e-01   p_joint 1.000500e-01

Outputting figure to mutsig2_images.part000000000106/MKX.3_1083_20000_0.08475_0.1277_0.10005.png
                gene_name: MKX
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 52 percent done.
MLLT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.334826e-02	ci left: 1.428581e-01	ci right 1.569465e-01	k: 1498	n:10000
Cons ci ratio: 1.084746e-01	ci left: 1.092005e-01	ci right 1.218245e-01	k: 1154	n:10000
KS ci ratio: 5.547877e-02	ci left: 3.236634e-01	ci right 3.422340e-01	k: 3329	n:10000
MLLT6   10000 perm   2 sec   (5126 perm/sec)   p_kst 3.329000e-01   p_cons 1.154000e-01   p_joint 1.498000e-01

Joint ci ratio: 6.468121e-02	ci left: 1.501084e-01	ci right 1.601921e-01	k: 3102	n:20000
Cons ci ratio: 7.644287e-02	ci left: 1.117405e-01	ci right 1.206714e-01	k: 2323	n:20000
KS ci ratio: 3.950924e-02	ci left: 3.232844e-01	ci right 3.363651e-01	k: 6596	n:20000
MLLT6   20000 perm   4 sec   (4596 perm/sec)   p_kst 3.298000e-01   p_cons 1.161500e-01   p_joint 1.551000e-01

Outputting figure to mutsig2_images.part000000000106/MLLT6.3_3362_20000_0.3298_0.11615_0.1551.png
                gene_name: MLLT6
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 54 percent done.
MLNR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.181872e-01	ci left: 9.321372e-02	ci right 1.050210e-01	k: 990	n:10000
Cons ci ratio: 8.585446e-02	ci left: 1.650429e-01	ci right 1.799484e-01	k: 1724	n:10000
KS ci ratio: 2.076755e-01	ci left: 3.081908e-02	ci right 3.805543e-02	k: 343	n:10000
MLNR   10000 perm   2 sec   (5466 perm/sec)   p_kst 3.430000e-02   p_cons 1.724000e-01   p_joint 9.900000e-02

Joint ci ratio: 1.212030e-01	ci left: 4.668018e-02	ci right 5.275159e-02	k: 993	n:20000
Cons ci ratio: 5.867462e-02	ci left: 1.770695e-01	ci right 1.878230e-01	k: 3648	n:20000
KS ci ratio: 1.475196e-01	ci left: 3.157949e-02	ci right 3.665714e-02	k: 681	n:20000
MLNR   20000 perm   4 sec   (4880 perm/sec)   p_kst 3.405000e-02   p_cons 1.824000e-01   p_joint 4.965000e-02

Joint ci ratio: 9.019386e-02	ci left: 5.655559e-02	ci right 6.193016e-02	k: 1776	n:30000
Cons ci ratio: 4.800173e-02	ci left: 1.774830e-01	ci right 1.862453e-01	k: 5455	n:30000
KS ci ratio: 1.242077e-01	ci left: 3.013415e-02	ci right 3.415712e-02	k: 963	n:30000
MLNR   30000 perm   6 sec   (4675 perm/sec)   p_kst 3.210000e-02   p_cons 1.818333e-01   p_joint 5.920000e-02

Joint ci ratio: 8.060522e-02	ci left: 5.357041e-02	ci right 5.809435e-02	k: 2232	n:40000
Cons ci ratio: 4.172395e-02	ci left: 1.769897e-01	ci right 1.845567e-01	k: 7230	n:40000
KS ci ratio: 1.058082e-01	ci left: 3.141701e-02	ci right 3.495118e-02	k: 1326	n:40000
MLNR   40000 perm   9 sec   (4566 perm/sec)   p_kst 3.315000e-02   p_cons 1.807500e-01   p_joint 5.580000e-02

Joint ci ratio: 7.538813e-02	ci left: 4.936276e-02	ci right 5.324954e-02	k: 2564	n:50000
Cons ci ratio: 3.716547e-02	ci left: 1.786067e-01	ci right 1.853903e-01	k: 9099	n:50000
KS ci ratio: 9.489718e-02	ci left: 3.143183e-02	ci right 3.458269e-02	k: 1649	n:50000
MLNR   50000 perm   11 sec   (4419 perm/sec)   p_kst 3.298000e-02   p_cons 1.819800e-01   p_joint 5.128000e-02

Outputting figure to mutsig2_images.part000000000106/MLNR.3_1247_50000_0.03298_0.18198_0.05128.png
                gene_name: MLNR
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.053 

Current progress: 56 percent done.
MMD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.430567e-02	ci left: 4.292423e-01	ci right 4.487932e-01	k: 4390	n:10000
Cons ci ratio: 1.442374e-02	ci left: 8.742881e-01	ci right 8.870892e-01	k: 8808	n:10000
KS ci ratio: 9.382733e-02	ci left: 1.415836e-01	ci right 1.556218e-01	k: 1485	n:10000
MMD2   10000 perm   1 sec   (7024 perm/sec)   p_kst 1.485000e-01   p_cons 8.808000e-01   p_joint 4.390000e-01

Outputting figure to mutsig2_images.part000000000106/MMD2.3_841_10000_0.1485_0.8808_0.439.png
                gene_name: MMD2
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 57 percent done.
MMP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.035355e-02	ci left: 2.284954e-01	ci right 2.452581e-01	k: 2368	n:10000
Cons ci ratio: 1.273839e-01	ci left: 8.096444e-02	ci right 9.207781e-02	k: 864	n:10000
KS ci ratio: 9.825754e-02	ci left: 1.305129e-01	ci right 1.440991e-01	k: 1372	n:10000
MMP12   10000 perm   2 sec   (6147 perm/sec)   p_kst 1.372000e-01   p_cons 8.640000e-02   p_joint 2.368000e-01

Joint ci ratio: 7.101623e-02	ci left: 1.274853e-01	ci right 1.369219e-01	k: 2643	n:20000
Cons ci ratio: 8.805710e-02	ci left: 8.616660e-02	ci right 9.415302e-02	k: 1802	n:20000
KS ci ratio: 6.978939e-02	ci left: 1.314745e-01	ci right 1.410316e-01	k: 2724	n:20000
MMP12   20000 perm   4 sec   (5385 perm/sec)   p_kst 1.362000e-01   p_cons 9.010000e-02   p_joint 1.321500e-01

Outputting figure to mutsig2_images.part000000000106/MMP12.3_1452_20000_0.1362_0.0901_0.13215.png
                gene_name: MMP12
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 59 percent done.
MMP20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.990641e-02	ci left: 7.869522e-01	ci right 8.028756e-01	k: 7950	n:10000
Cons ci ratio: 4.142864e-02	ci left: 4.624745e-01	ci right 4.821416e-01	k: 4723	n:10000
KS ci ratio: 8.175097e-03	ci left: 9.543007e-01	ci right 9.622295e-01	k: 9584	n:10000
MMP20   10000 perm   2 sec   (5876 perm/sec)   p_kst 9.584000e-01   p_cons 4.723000e-01   p_joint 7.950000e-01

Outputting figure to mutsig2_images.part000000000106/MMP20.3_1492_10000_0.9584_0.4723_0.795.png
                gene_name: MMP20
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 60 percent done.
MNT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.091704e-01	ci left: 1.079317e-01	ci right 1.204941e-01	k: 1141	n:10000
Cons ci ratio: 6.262613e-02	ci left: 2.726011e-01	ci right 2.903264e-01	k: 2814	n:10000
KS ci ratio: 1.361933e-01	ci left: 7.126753e-02	ci right 8.178074e-02	k: 764	n:10000
MNT   10000 perm   2 sec   (5703 perm/sec)   p_kst 7.640000e-02   p_cons 2.814000e-01   p_joint 1.141000e-01

Joint ci ratio: 7.744556e-02	ci left: 1.091353e-01	ci right 1.179774e-01	k: 2270	n:20000
Cons ci ratio: 4.509087e-02	ci left: 2.680255e-01	ci right 2.804402e-01	k: 5484	n:20000
KS ci ratio: 9.661324e-02	ci left: 7.236421e-02	ci right 7.975961e-02	k: 1520	n:20000
MNT   20000 perm   4 sec   (4982 perm/sec)   p_kst 7.600000e-02   p_cons 2.742000e-01   p_joint 1.135000e-01

Outputting figure to mutsig2_images.part000000000106/MNT.3_1773_20000_0.076_0.2742_0.1135.png
                gene_name: MNT
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 62 percent done.
MOBKL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.555350e-02	ci left: 5.387836e-01	ci right 5.583881e-01	k: 5486	n:10000
Cons ci ratio: 7.951784e-02	ci left: 1.876681e-01	ci right 2.033097e-01	k: 1954	n:10000
KS ci ratio: 4.892293e-02	ci left: 3.813192e-01	ci right 4.005443e-01	k: 3909	n:10000
MOBKL3   10000 perm   2 sec   (6492 perm/sec)   p_kst 3.909000e-01   p_cons 1.954000e-01   p_joint 5.486000e-01

Outputting figure to mutsig2_images.part000000000106/MOBKL3.3_710_10000_0.3909_0.1954_0.5486.png
                gene_name: MOBKL3
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 63 percent done.
MOG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.800080e-02	ci left: 3.903785e-01	ci right 4.096798e-01	k: 4000	n:10000
Cons ci ratio: 4.530898e-02	ci left: 4.182745e-01	ci right 4.377675e-01	k: 4280	n:10000
KS ci ratio: 5.483567e-02	ci left: 3.288264e-01	ci right 3.474680e-01	k: 3381	n:10000
MOG   10000 perm   2 sec   (6472 perm/sec)   p_kst 3.381000e-01   p_cons 4.280000e-01   p_joint 4.000000e-01

Outputting figure to mutsig2_images.part000000000106/MOG.3_945_10000_0.3381_0.428_0.4.png
                gene_name: MOG
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 65 percent done.
MKRN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.953727e-03	ci left: 9.346478e-01	ci right 9.440942e-01	k: 9395	n:10000
KS ci ratio: 3.887410e-02	ci left: 4.942505e-01	ci right 5.139471e-01	k: 5041	n:10000
MKRN2   10000 perm   2 sec   (6343 perm/sec)   p_kst 5.041000e-01   p_cons 9.395000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MKRN2.2_1283_10000_0.5041_0.9395_1.png
                gene_name: MKRN2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
MLEC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.149076e-02	ci left: 7.605104e-01	ci right 7.771327e-01	k: 7689	n:10000
KS ci ratio: 2.192571e-02	ci left: 7.532242e-01	ci right 7.700231e-01	k: 7617	n:10000
MLEC   10000 perm   1 sec   (7158 perm/sec)   p_kst 7.617000e-01   p_cons 7.689000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MLEC.2_899_10000_0.7617_0.7689_1.png
                gene_name: MLEC
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
MLF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.650160e-02	ci left: 8.423403e-01	ci right 8.564555e-01	k: 8495	n:10000
Cons ci ratio: 6.045373e-02	ci left: 2.869643e-01	ci right 3.049547e-01	k: 2959	n:10000
KS ci ratio: 4.463091e-02	ci left: 4.256523e-01	ci right 4.451853e-01	k: 4354	n:10000
MLF2   10000 perm   1 sec   (6811 perm/sec)   p_kst 4.354000e-01   p_cons 2.959000e-01   p_joint 8.495000e-01

Outputting figure to mutsig2_images.part000000000106/MLF2.2_775_10000_0.4354_0.2959_0.8495.png
                gene_name: MLF2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 70 percent done.
MLKL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.534834e-02	ci left: 2.049112e-01	ci right 2.210563e-01	k: 2129	n:10000
Cons ci ratio: 5.749955e-02	ci left: 3.080829e-01	ci right 3.264237e-01	k: 3172	n:10000
KS ci ratio: 7.279234e-02	ci left: 2.165505e-01	ci right 2.330101e-01	k: 2247	n:10000
MLKL   10000 perm   2 sec   (6654 perm/sec)   p_kst 2.247000e-01   p_cons 3.172000e-01   p_joint 2.129000e-01

Outputting figure to mutsig2_images.part000000000106/MLKL.2_1487_10000_0.2247_0.3172_0.2129.png
                gene_name: MLKL
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 71 percent done.
MLLT11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.432366e-02	ci left: 4.290429e-01	ci right 4.485928e-01	k: 4388	n:10000
Cons ci ratio: 6.145491e-02	ci left: 2.802271e-01	ci right 2.980959e-01	k: 2891	n:10000
KS ci ratio: 1.904187e-02	ci left: 8.012576e-01	ci right 8.167620e-01	k: 8091	n:10000
MLLT11   10000 perm   1 sec   (7340 perm/sec)   p_kst 8.091000e-01   p_cons 2.891000e-01   p_joint 4.388000e-01

Outputting figure to mutsig2_images.part000000000106/MLLT11.2_277_10000_0.8091_0.2891_0.4388.png
                gene_name: MLLT11
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 73 percent done.
MLPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.790008e-02	ci left: 3.051071e-01	ci right 3.234012e-01	k: 3142	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
MLPH   10000 perm   2 sec   (6037 perm/sec)   p_kst 1   p_cons 3.142000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MLPH.2_1863_10000_1_0.3142_1.png
                gene_name: MLPH
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
MLST8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.034183e-02	ci left: 6.157275e-01	ci right 6.347995e-01	k: 6253	n:10000
Cons ci ratio: 2.162976e-02	ci left: 7.581825e-01	ci right 7.748620e-01	k: 7666	n:10000
KS ci ratio: 7.014019e-02	ci left: 2.295818e-01	ci right 2.463711e-01	k: 2379	n:10000
MLST8   10000 perm   2 sec   (6589 perm/sec)   p_kst 2.379000e-01   p_cons 7.666000e-01   p_joint 6.253000e-01

Outputting figure to mutsig2_images.part000000000106/MLST8.2_1013_10000_0.2379_0.7666_0.6253.png
                gene_name: MLST8
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 76 percent done.
MMAB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.172642e-02	ci left: 7.565633e-01	ci right 7.732821e-01	k: 7650	n:10000
Cons ci ratio: 6.714328e-02	ci left: 2.455898e-01	ci right 2.627536e-01	k: 2541	n:10000
KS ci ratio: 5.377486e-02	ci left: 3.375666e-01	ci right 3.563226e-01	k: 3469	n:10000
MMAB   10000 perm   2 sec   (6615 perm/sec)   p_kst 3.469000e-01   p_cons 2.541000e-01   p_joint 7.650000e-01

Outputting figure to mutsig2_images.part000000000106/MMAB.2_789_10000_0.3469_0.2541_0.765.png
                gene_name: MMAB
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 78 percent done.
MMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.855665e-02	ci left: 4.983503e-01	ci right 5.180449e-01	k: 5082	n:10000
Cons ci ratio: 7.166236e-02	ci left: 2.219788e-01	ci right 2.385786e-01	k: 2302	n:10000
KS ci ratio: 5.483567e-02	ci left: 3.288264e-01	ci right 3.474680e-01	k: 3381	n:10000
MMP1   10000 perm   2 sec   (6069 perm/sec)   p_kst 3.381000e-01   p_cons 2.302000e-01   p_joint 5.082000e-01

Outputting figure to mutsig2_images.part000000000106/MMP1.2_1450_10000_0.3381_0.2302_0.5082.png
                gene_name: MMP1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 79 percent done.
MMP13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.697569e-02	ci left: 6.693457e-01	ci right 6.877502e-01	k: 6786	n:10000
KS ci ratio: 6.844577e-03	ci left: 9.669936e-01	ci right 9.737287e-01	k: 9705	n:10000
MMP13   10000 perm   2 sec   (6287 perm/sec)   p_kst 9.705000e-01   p_cons 6.786000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MMP13.2_1456_10000_0.9705_0.6786_1.png
                gene_name: MMP13
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
MMP16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.331431e-02	ci left: 2.682448e-01	ci right 2.858852e-01	k: 2770	n:10000
Cons ci ratio: 1.402025e-01	ci left: 6.739585e-02	ci right 7.765485e-02	k: 724	n:10000
KS ci ratio: 3.637945e-02	ci left: 5.273677e-01	ci right 5.470106e-01	k: 5372	n:10000
MMP16   10000 perm   2 sec   (5964 perm/sec)   p_kst 5.372000e-01   p_cons 7.240000e-02   p_joint 2.770000e-01

Joint ci ratio: 7.957616e-02	ci left: 1.038780e-01	ci right 1.125363e-01	k: 2163	n:20000
Cons ci ratio: 9.699335e-02	ci left: 7.182651e-02	ci right 7.919747e-02	k: 1509	n:20000
KS ci ratio: 2.578285e-02	ci left: 5.291587e-01	ci right 5.430308e-01	k: 10722	n:20000
MMP16   20000 perm   4 sec   (5311 perm/sec)   p_kst 5.361000e-01   p_cons 7.545000e-02   p_joint 1.081500e-01

Outputting figure to mutsig2_images.part000000000106/MMP16.2_2020_20000_0.5361_0.07545_0.10815.png
                gene_name: MMP16
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 83 percent done.
MMP25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.159149e-02	ci left: 5.965440e-01	ci right 6.157941e-01	k: 6062	n:10000
Cons ci ratio: 4.196429e-02	ci left: 4.560841e-01	ci right 4.757357e-01	k: 4659	n:10000
KS ci ratio: 3.821876e-02	ci left: 5.027508e-01	ci right 5.224418e-01	k: 5126	n:10000
MMP25   10000 perm   2 sec   (6084 perm/sec)   p_kst 5.126000e-01   p_cons 4.659000e-01   p_joint 6.062000e-01

Outputting figure to mutsig2_images.part000000000106/MMP25.2_1729_10000_0.5126_0.4659_0.6062.png
                gene_name: MMP25
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 84 percent done.
MMP26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.076659e-03	ci left: 9.960741e-01	ci right 9.982200e-01	k: 9973	n:10000
Cons ci ratio: 1.045149e-02	ci left: 9.286459e-01	ci right 9.384997e-01	k: 9337	n:10000
KS ci ratio: 2.789543e-02	ci left: 6.544443e-01	ci right 6.730602e-01	k: 6638	n:10000
MMP26   10000 perm   1 sec   (6802 perm/sec)   p_kst 6.638000e-01   p_cons 9.337000e-01   p_joint 9.973000e-01

Outputting figure to mutsig2_images.part000000000106/MMP26.2_810_10000_0.6638_0.9337_0.9973.png
                gene_name: MMP26
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1.00 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1.00 

Current progress: 86 percent done.
MMP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.814923e-02	ci left: 8.158839e-01	ci right 8.309272e-01	k: 8235	n:10000
Cons ci ratio: 6.398467e-02	ci left: 2.640875e-01	ci right 2.816450e-01	k: 2728	n:10000
KS ci ratio: 1.908499e-02	ci left: 8.005470e-01	ci right 8.160730e-01	k: 8084	n:10000
MMP3   10000 perm   2 sec   (6383 perm/sec)   p_kst 8.084000e-01   p_cons 2.728000e-01   p_joint 8.235000e-01

Outputting figure to mutsig2_images.part000000000106/MMP3.2_1474_10000_0.8084_0.2728_0.8235.png
                gene_name: MMP3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 87 percent done.
MMP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.833256e-02	ci left: 2.390661e-01	ci right 2.560812e-01	k: 2475	n:10000
Cons ci ratio: 1.169468e-01	ci left: 9.506351e-02	ci right 1.069701e-01	k: 1009	n:10000
KS ci ratio: 4.058238e-02	ci left: 4.727624e-01	ci right 4.924478e-01	k: 4826	n:10000
MMP8   10000 perm   2 sec   (6221 perm/sec)   p_kst 4.826000e-01   p_cons 1.009000e-01   p_joint 2.475000e-01

Joint ci ratio: 5.216900e-02	ci left: 2.143740e-01	ci right 2.259075e-01	k: 4402	n:20000
Cons ci ratio: 8.222091e-02	ci left: 9.783865e-02	ci right 1.062774e-01	k: 2040	n:20000
KS ci ratio: 2.888573e-02	ci left: 4.724048e-01	ci right 4.863012e-01	k: 9587	n:20000
MMP8   20000 perm   4 sec   (5425 perm/sec)   p_kst 4.793500e-01   p_cons 1.020000e-01   p_joint 2.201000e-01

Outputting figure to mutsig2_images.part000000000106/MMP8.2_1444_20000_0.47935_0.102_0.2201.png
                gene_name: MMP8
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 89 percent done.
MN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.164184e-02	ci left: 7.579801e-01	ci right 7.746645e-01	k: 7664	n:10000
KS ci ratio: 5.851007e-02	ci left: 3.006442e-01	ci right 3.188667e-01	k: 3097	n:10000
MN1   10000 perm   2 sec   (5042 perm/sec)   p_kst 3.097000e-01   p_cons 7.664000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MN1.2_3971_10000_0.3097_0.7664_1.png
                gene_name: MN1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
MND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.372124e-02	ci left: 8.846253e-01	ci right 8.969460e-01	k: 8909	n:10000
Cons ci ratio: 2.231802e-02	ci left: 7.466492e-01	ci right 7.636020e-01	k: 7552	n:10000
KS ci ratio: 6.458655e-02	ci left: 2.604260e-01	ci right 2.779087e-01	k: 2691	n:10000
MND1   10000 perm   2 sec   (6653 perm/sec)   p_kst 2.691000e-01   p_cons 7.552000e-01   p_joint 8.909000e-01

Outputting figure to mutsig2_images.part000000000106/MND1.2_650_10000_0.2691_0.7552_0.8909.png
                gene_name: MND1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 92 percent done.
MOBKL1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.766254e-02	ci left: 3.937641e-01	ci right 4.130922e-01	k: 4034	n:10000
Cons ci ratio: 1.119563e-01	ci left: 1.030540e-01	ci right 1.153747e-01	k: 1091	n:10000
KS ci ratio: 5.663503e-02	ci left: 3.146312e-01	ci right 3.330715e-01	k: 3238	n:10000
MOBKL1A   10000 perm   1 sec   (7294 perm/sec)   p_kst 3.238000e-01   p_cons 1.091000e-01   p_joint 4.034000e-01

Joint ci ratio: 5.005951e-02	ci left: 2.287412e-01	ci right 2.405361e-01	k: 4692	n:20000
Cons ci ratio: 7.787170e-02	ci left: 1.080541e-01	ci right 1.168589e-01	k: 2248	n:20000
KS ci ratio: 4.030909e-02	ci left: 3.145312e-01	ci right 3.275209e-01	k: 6420	n:20000
MOBKL1A   20000 perm   3 sec   (6078 perm/sec)   p_kst 3.210000e-01   p_cons 1.124000e-01   p_joint 2.346000e-01

Outputting figure to mutsig2_images.part000000000106/MOBKL1A.2_675_20000_0.321_0.1124_0.2346.png
                gene_name: MOBKL1A
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 94 percent done.
MOBKL2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.422036e-02	ci left: 7.148214e-01	ci right 7.324482e-01	k: 7237	n:10000
KS ci ratio: 9.926549e-02	ci left: 1.281636e-01	ci right 1.416499e-01	k: 1348	n:10000
MOBKL2A   10000 perm   1 sec   (6976 perm/sec)   p_kst 1.348000e-01   p_cons 7.237000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MOBKL2A.2_666_10000_0.1348_0.7237_1.png
                gene_name: MOBKL2A
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
MOBKL2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.812695e-02	ci left: 6.507205e-01	ci right 6.693861e-01	k: 6601	n:10000
KS ci ratio: 2.611385e-02	ci left: 6.834513e-01	ci right 7.016364e-01	k: 6926	n:10000
MOBKL2C   10000 perm   1 sec   (6688 perm/sec)   p_kst 6.926000e-01   p_cons 6.601000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MOBKL2C.2_823_10000_0.6926_0.6601_1.png
                gene_name: MOBKL2C
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
MOCS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.242059e-02	ci left: 7.449300e-01	ci right 7.619221e-01	k: 7535	n:10000
KS ci ratio: 1.632061e-02	ci left: 8.451935e-01	ci right 8.592007e-01	k: 8523	n:10000
MOCS3   10000 perm   2 sec   (6280 perm/sec)   p_kst 8.523000e-01   p_cons 7.535000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MOCS3.2_1387_10000_0.8523_0.7535_1.png
                gene_name: MOCS3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
MOGAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.611379e-02	ci left: 4.097030e-01	ci right 4.291440e-01	k: 4194	n:10000
KS ci ratio: 4.616116e-02	ci left: 4.092047e-01	ci right 4.286425e-01	k: 4189	n:10000
MOGAT3   10000 perm   2 sec   (6295 perm/sec)   p_kst 4.189000e-01   p_cons 4.194000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000106/MOGAT3.2_1054_10000_0.4189_0.4194_1.png
                gene_name: MOGAT3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000106
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 106 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1647>
Subject: Job 9894018: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1647>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000107> was used as the working directory.
Started at Sat Oct  6 00:18:03 2012
Results reported at Sat Oct  6 00:25:19 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000107.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000107.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 107  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000107.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    458.86 sec.
    Max Memory :      3555 MB
    Max Swap   :      6058 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
107
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 107
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 107: processing genes 9557 - 9646
Calculating significance of each gene.
Using projection method.
9557	MOGS	6.438376e-01
9558	MON1A	1
9559	MON1B	4.343474e-01
9560	MON2	1.365223e-01
9561	MORC1	8.496735e-02
9562	MORC2	5.158469e-01
9563	MORC3	5.387983e-01
9564	MORC4	7.718753e-01
9565	MORF4	1
9566	MORF4L1	4.572946e-01
9567	MORF4L2	2.373741e-01
9568	MORN1	9.170609e-01
9569	MORN3	4.595269e-01
9570	MORN4	3.441167e-01
9571	MORN5	2.392091e-01
9572	MOS	2.271399e-01
9573	MOSC1	1
9574	MOSC2	1
9575	MOSPD1	2.299558e-01
9576	MOSPD2	5.988159e-01
9577	MOSPD3	7.084888e-01
9578	MOV10	7.230078e-01
9579	MOV10L1	5.262266e-01
9580	MOXD1	3.009220e-01
9581	MPDU1	5.800807e-01
9582	MPDZ	4.197345e-01
9583	MPEG1	3.894231e-01
9584	MPG	1
9585	MPHOSPH10	6.659038e-01
9586	MPHOSPH6	1
9587	MPHOSPH8	9.725610e-01
9588	MPHOSPH9	3.969004e-01
9589	MPI	7.944075e-01
9590	MPL	8.657890e-01
9591	MPND	8.671161e-01
9592	MPO	7.580555e-01
9593	MPP1	3.651450e-01
9594	MPP2	2.348119e-01
9595	MPP3	6.005162e-01
9596	MPP4	9.974740e-02
9597	MPP5	5.936952e-01
9598	MPP6	1.659050e-01
9599	MPP7	4.004019e-01
9600	MPPE1	7.468182e-01
9601	MPPED1	6.725063e-01
9602	MPPED2	1.818336e-01
9603	MPRIP	6.936702e-01
9604	MPST	1
9605	MPV17	1
9606	MPV17L	3.782456e-01
9607	MPV17L2	5.652480e-01
9608	MPZ	1
9609	MPZL1	5.329633e-01
9610	MPZL2	5.863115e-02
9611	MPZL3	5.097116e-01
9612	MR1	5.665877e-01
9613	MRAP	5.228183e-01
9614	MRAP2	5.598323e-02
9615	MRAS	5.630643e-01
9616	MRC2	8.216041e-02
9617	MRE11A	6.802822e-01
9618	MREG	5.072748e-01
9619	MRFAP1	1
9620	MRFAP1L1	1
9621	MRGPRD	1.678679e-02
9622	MRGPRE	7.163510e-01
9623	MRGPRF	1
9624	MRGPRX1	1.864518e-03
9625	MRGPRX2	5.069330e-01
9626	MRGPRX3	9.685233e-02
9627	MRGPRX4	2.042945e-01
9628	MRI1	4.016044e-01
9629	MRM1	6.303319e-01
9630	MRO	1
9631	MRP63	1
9632	MRPL1	5.385805e-01
9633	MRPL10	6.661677e-01
9634	MRPL11	1
9635	MRPL12	1
9636	MRPL13	4.621937e-01
9637	MRPL14	1
9638	MRPL15	1
9639	MRPL16	1
9640	MRPL17	1
9641	MRPL18	4.992454e-01
9642	MRPL19	7.185854e-01
9643	MRPL2	7.073236e-01
9644	MRPL20	7.888673e-02
9645	MRPL21	4.474447e-01
9646	MRPL22	1.361201e-01
Done

Running MutSig 2:
Scatter job 107: processing genes 9557 - 9646
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MON2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.929473e-02	ci left: 3.777363e-01	ci right 3.969293e-01	k: 3873	n:10000
Cons ci ratio: 3.918818e-03	ci left: 9.880698e-01	ci right 9.920369e-01	k: 9902	n:10000
KS ci ratio: 6.398467e-02	ci left: 2.640875e-01	ci right 2.816450e-01	k: 2728	n:10000
MON2   10000 perm   3 sec   (3782 perm/sec)   p_kst 2.728000e-01   p_cons 9.902000e-01   p_joint 3.873000e-01

Outputting figure to mutsig2_images.part000000000107/MON2.13_5294_10000_0.2728_0.9902_0.3873.png
                gene_name: MON2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 2 percent done.
MOV10L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.931972e-02	ci left: 4.885519e-01	ci right 5.082490e-01	k: 4984	n:10000
Cons ci ratio: 7.172305e-02	ci left: 2.216827e-01	ci right 2.382749e-01	k: 2299	n:10000
KS ci ratio: 3.234426e-02	ci left: 5.852018e-01	ci right 6.045429e-01	k: 5949	n:10000
MOV10L1   10000 perm   2 sec   (4244 perm/sec)   p_kst 5.949000e-01   p_cons 2.299000e-01   p_joint 4.984000e-01

Outputting figure to mutsig2_images.part000000000107/MOV10L1.13_3811_10000_0.5949_0.2299_0.4984.png
                gene_name: MOV10L1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 4 percent done.
MORC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.376626e-02	ci left: 5.642377e-01	ci right 5.837192e-01	k: 5740	n:10000
KS ci ratio: 1.399478e-02	ci left: 8.806319e-01	ci right 8.931418e-01	k: 8870	n:10000
MORC1   10000 perm   2 sec   (5073 perm/sec)   p_kst 8.870000e-01   p_cons 5.740000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MORC1.11_3067_10000_0.887_0.574_1.png
                gene_name: MORC1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
MPDZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.142066e-02	ci left: 2.231634e-01	ci right 2.397933e-01	k: 2314	n:10000
Cons ci ratio: 4.069629e-02	ci left: 4.713638e-01	ci right 4.910472e-01	k: 4812	n:10000
KS ci ratio: 9.320203e-02	ci left: 1.432503e-01	ci right 1.573541e-01	k: 1502	n:10000
MPDZ   10000 perm   3 sec   (3830 perm/sec)   p_kst 1.502000e-01   p_cons 4.812000e-01   p_joint 2.314000e-01

Outputting figure to mutsig2_images.part000000000107/MPDZ.11_6306_10000_0.1502_0.4812_0.2314.png
                gene_name: MPDZ
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 9 percent done.
MRC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.121871e-01	ci left: 1.026640e-01	ci right 1.149650e-01	k: 1087	n:10000
Cons ci ratio: 1.036624e-01	ci left: 1.185779e-01	ci right 1.316413e-01	k: 1250	n:10000
KS ci ratio: 9.603921e-02	ci left: 1.358995e-01	ci right 1.497093e-01	k: 1427	n:10000
MRC2   10000 perm   2 sec   (4439 perm/sec)   p_kst 1.427000e-01   p_cons 1.250000e-01   p_joint 1.087000e-01

Joint ci ratio: 8.973561e-02	ci left: 8.317825e-02	ci right 9.104227e-02	k: 1741	n:20000
Cons ci ratio: 7.423726e-02	ci left: 1.177895e-01	ci right 1.269206e-01	k: 2446	n:20000
KS ci ratio: 6.697016e-02	ci left: 1.413302e-01	ci right 1.511729e-01	k: 2924	n:20000
MRC2   20000 perm   5 sec   (4031 perm/sec)   p_kst 1.462000e-01   p_cons 1.223000e-01   p_joint 8.705000e-02

Outputting figure to mutsig2_images.part000000000107/MRC2.10_4560_20000_0.1462_0.1223_0.08705.png
                gene_name: MRC2
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.091 

Current progress: 11 percent done.
MPP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.773593e-02	ci left: 8.225936e-01	ci right 8.374136e-01	k: 8301	n:10000
KS ci ratio: 2.597904e-02	ci left: 6.856687e-01	ci right 7.038177e-01	k: 6948	n:10000
MPP4   10000 perm   2 sec   (5101 perm/sec)   p_kst 6.948000e-01   p_cons 8.301000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MPP4.8_1998_10000_0.6948_0.8301_1.png
                gene_name: MPP4
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
MRE11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.359396e-02	ci left: 8.864693e-01	ci right 8.987010e-01	k: 8927	n:10000
KS ci ratio: 1.037541e-02	ci left: 9.295765e-01	ci right 9.393685e-01	k: 9346	n:10000
MRE11A   10000 perm   2 sec   (5349 perm/sec)   p_kst 9.346000e-01   p_cons 8.927000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MRE11A.8_2203_10000_0.9346_0.8927_1.png
                gene_name: MRE11A
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
MOXD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.708085e-02	ci left: 6.676335e-01	ci right 6.860634e-01	k: 6769	n:10000
KS ci ratio: 6.724503e-03	ci left: 9.680482e-01	ci right 9.746734e-01	k: 9715	n:10000
MOXD1   10000 perm   2 sec   (5165 perm/sec)   p_kst 9.715000e-01   p_cons 6.769000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MOXD1.7_1890_10000_0.9715_0.6769_1.png
                gene_name: MOXD1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
MRGPRX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.891494e-03	ci left: 9.749320e-01	ci right 9.807851e-01	k: 9780	n:10000
KS ci ratio: 1.949046e-02	ci left: 7.938493e-01	ci right 8.095745e-01	k: 8018	n:10000
MRGPRX1   10000 perm   2 sec   (5843 perm/sec)   p_kst 8.018000e-01   p_cons 9.780000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MRGPRX1.7_973_10000_0.8018_0.978_1.png
                gene_name: MRGPRX1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
MORC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.561004e-02	ci left: 1.369772e-01	ci right 1.508309e-01	k: 1438	n:10000
Cons ci ratio: 7.378805e-02	ci left: 2.119134e-01	ci right 2.282500e-01	k: 2200	n:10000
KS ci ratio: 1.167540e-01	ci left: 9.535564e-02	ci right 1.072778e-01	k: 1012	n:10000
MORC3   10000 perm   2 sec   (5215 perm/sec)   p_kst 1.012000e-01   p_cons 2.200000e-01   p_joint 1.438000e-01

Joint ci ratio: 7.173704e-02	ci left: 1.252205e-01	ci right 1.345874e-01	k: 2597	n:20000
Cons ci ratio: 5.232905e-02	ci left: 2.133340e-01	ci right 2.248478e-01	k: 4381	n:20000
KS ci ratio: 8.195287e-02	ci left: 9.842765e-02	ci right 1.068883e-01	k: 2052	n:20000
MORC3   20000 perm   4 sec   (4783 perm/sec)   p_kst 1.026000e-01   p_cons 2.190500e-01   p_joint 1.298500e-01

Outputting figure to mutsig2_images.part000000000107/MORC3.6_2888_20000_0.1026_0.21905_0.12985.png
                gene_name: MORC3
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 22 percent done.
MPP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.232741e-01	ci left: 2.655489e-02	ci right 3.332262e-02	k: 298	n:10000
Cons ci ratio: 7.703343e-03	ci left: 9.590082e-01	ci right 9.665191e-01	k: 9629	n:10000
KS ci ratio: 4.884054e-01	ci left: 4.844389e-03	ci right 8.053335e-03	k: 63	n:10000
MPP6   10000 perm   2 sec   (5435 perm/sec)   p_kst 6.300000e-03   p_cons 9.629000e-01   p_joint 2.980000e-02

Joint ci ratio: 1.573407e-01	ci left: 2.772743e-02	ci right 3.251047e-02	k: 601	n:20000
Cons ci ratio: 5.545895e-03	ci left: 9.587922e-01	ci right 9.641725e-01	k: 19231	n:20000
KS ci ratio: 3.387667e-01	ci left: 5.525009e-03	ci right 7.821951e-03	k: 132	n:20000
MPP6   20000 perm   4 sec   (4916 perm/sec)   p_kst 6.600000e-03   p_cons 9.615500e-01   p_joint 3.005000e-02

Joint ci ratio: 1.437114e-01	ci left: 2.245846e-02	ci right 2.596784e-02	k: 725	n:30000
Cons ci ratio: 4.493623e-03	ci left: 9.598773e-01	ci right 9.642326e-01	k: 28863	n:30000
KS ci ratio: 2.896822e-01	ci left: 5.188478e-03	ci right 6.975876e-03	k: 181	n:30000
MPP6   30000 perm   6 sec   (4719 perm/sec)   p_kst 6.033333e-03   p_cons 9.621000e-01   p_joint 2.416667e-02

Joint ci ratio: 1.160673e-01	ci left: 2.611359e-02	ci right 2.935546e-02	k: 1108	n:40000
Cons ci ratio: 3.891229e-03	ci left: 9.601823e-01	ci right 9.639502e-01	k: 38484	n:40000
KS ci ratio: 2.400017e-01	ci left: 5.829977e-03	ci right 7.442902e-03	k: 264	n:40000
MPP6   40000 perm   9 sec   (4571 perm/sec)   p_kst 6.600000e-03   p_cons 9.621000e-01   p_joint 2.770000e-02

Joint ci ratio: 1.226517e-01	ci left: 1.879080e-02	ci right 2.126537e-02	k: 1000	n:50000
Cons ci ratio: 3.462062e-03	ci left: 9.607773e-01	ci right 9.641288e-01	k: 48124	n:50000
KS ci ratio: 2.134517e-01	ci left: 5.984764e-03	ci right 7.433400e-03	k: 334	n:50000
MPP6   50000 perm   11 sec   (4486 perm/sec)   p_kst 6.680000e-03   p_cons 9.624800e-01   p_joint 2.000000e-02

Joint ci ratio: 1.327867e-01	ci left: 1.336524e-02	ci right 1.528216e-02	k: 858	n:60000
Cons ci ratio: 3.158692e-03	ci left: 9.609660e-01	ci right 9.640224e-01	k: 57751	n:60000
KS ci ratio: 1.963347e-01	ci left: 5.951873e-03	ci right 7.263203e-03	k: 395	n:60000
MPP6   60000 perm   14 sec   (4414 perm/sec)   p_kst 6.583333e-03   p_cons 9.625167e-01   p_joint 1.430000e-02

Joint ci ratio: 1.282444e-01	ci left: 1.232611e-02	ci right 1.402889e-02	k: 921	n:70000
Cons ci ratio: 2.935377e-03	ci left: 9.608044e-01	ci right 9.636428e-01	k: 67357	n:70000
KS ci ratio: 1.823678e-01	ci left: 5.958990e-03	ci right 7.168173e-03	k: 458	n:70000
MPP6   70000 perm   16 sec   (4339 perm/sec)   p_kst 6.542857e-03   p_cons 9.622429e-01   p_joint 1.315714e-02

Joint ci ratio: 1.042245e-01	ci left: 1.646866e-02	ci right 1.829158e-02	k: 1389	n:80000
Cons ci ratio: 2.755841e-03	ci left: 9.606266e-01	ci right 9.632898e-01	k: 76958	n:80000
KS ci ratio: 1.711771e-01	ci left: 5.954849e-03	ci right 7.081387e-03	k: 520	n:80000
MPP6   80000 perm   19 sec   (4272 perm/sec)   p_kst 6.500000e-03   p_cons 9.619750e-01   p_joint 1.736250e-02

Joint ci ratio: 9.064738e-02	ci left: 1.943204e-02	ci right 2.128794e-02	k: 1831	n:90000
Cons ci ratio: 2.611870e-03	ci left: 9.603128e-01	ci right 9.628351e-01	k: 86543	n:90000
KS ci ratio: 1.619621e-01	ci left: 5.942734e-03	ci right 7.000565e-03	k: 581	n:90000
MPP6   90000 perm   21 sec   (4209 perm/sec)   p_kst 6.455556e-03   p_cons 9.615889e-01   p_joint 2.034444e-02

Joint ci ratio: 9.971173e-02	ci left: 1.446053e-02	ci right 1.598777e-02	k: 1521	n:100000
Cons ci ratio: 2.543763e-03	ci left: 9.583612e-01	ci right 9.608120e-01	k: 95960	n:100000
KS ci ratio: 1.532538e-01	ci left: 6.001670e-03	ci right 7.007276e-03	k: 649	n:100000
MPP6   100000 perm   24 sec   (4143 perm/sec)   p_kst 6.490000e-03   p_cons 9.596000e-01   p_joint 1.521000e-02

Joint ci ratio: 1.110537e-01	ci left: 1.057763e-02	ci right 1.183015e-02	k: 1231	n:110000
Cons ci ratio: 2.440106e-03	ci left: 9.579405e-01	ci right 9.602898e-01	k: 105504	n:110000
KS ci ratio: 1.429368e-01	ci left: 6.305307e-03	ci right 7.284605e-03	k: 746	n:110000
MPP6   110000 perm   27 sec   (4072 perm/sec)   p_kst 6.781818e-03   p_cons 9.591273e-01   p_joint 1.119091e-02

Joint ci ratio: 1.028599e-01	ci left: 1.134285e-02	ci right 1.258090e-02	k: 1434	n:120000
Cons ci ratio: 2.334287e-03	ci left: 9.580570e-01	ci right 9.603041e-01	k: 115103	n:120000
KS ci ratio: 1.373539e-01	ci left: 6.278413e-03	ci right 7.212331e-03	k: 808	n:120000
MPP6   120000 perm   30 sec   (3990 perm/sec)   p_kst 6.733333e-03   p_cons 9.591917e-01   p_joint 1.195000e-02

Joint ci ratio: 1.005263e-01	ci left: 1.097999e-02	ci right 1.214964e-02	k: 1502	n:130000
Cons ci ratio: 2.243778e-03	ci left: 9.580638e-01	ci right 9.602234e-01	k: 124690	n:130000
KS ci ratio: 1.313943e-01	ci left: 6.353008e-03	ci right 7.253819e-03	k: 883	n:130000
MPP6   130000 perm   34 sec   (3871 perm/sec)   p_kst 6.792308e-03   p_cons 9.591538e-01   p_joint 1.155385e-02

Joint ci ratio: 8.872841e-02	ci left: 1.313953e-02	ci right 1.436645e-02	k: 1924	n:140000
Cons ci ratio: 2.166978e-03	ci left: 9.579265e-01	ci right 9.600116e-01	k: 134257	n:140000
KS ci ratio: 1.272217e-01	ci left: 6.307009e-03	ci right 7.170754e-03	k: 942	n:140000
MPP6   140000 perm   37 sec   (3796 perm/sec)   p_kst 6.728571e-03   p_cons 9.589786e-01   p_joint 1.374286e-02

Joint ci ratio: 8.798585e-02	ci left: 1.248503e-02	ci right 1.364057e-02	k: 1958	n:150000
Cons ci ratio: 2.090435e-03	ci left: 9.580787e-01	ci right 9.600902e-01	k: 143864	n:150000
KS ci ratio: 1.234228e-01	ci left: 6.267537e-03	ci right 7.098371e-03	k: 1001	n:150000
MPP6   150000 perm   40 sec   (3729 perm/sec)   p_kst 6.673333e-03   p_cons 9.590933e-01   p_joint 1.305333e-02

Joint ci ratio: 8.868922e-02	ci left: 1.152722e-02	ci right 1.260307e-02	k: 1929	n:160000
Cons ci ratio: 2.027579e-03	ci left: 9.579727e-01	ci right 9.599232e-01	k: 153433	n:160000
KS ci ratio: 1.194361e-01	ci left: 6.287912e-03	ci right 7.092620e-03	k: 1069	n:160000
MPP6   160000 perm   43 sec   (3681 perm/sec)   p_kst 6.681250e-03   p_cons 9.589562e-01   p_joint 1.205625e-02

Joint ci ratio: 7.820303e-02	ci left: 1.399479e-02	ci right 1.513950e-02	k: 2475	n:170000
Cons ci ratio: 1.969319e-03	ci left: 9.579098e-01	ci right 9.598039e-01	k: 163007	n:170000
KS ci ratio: 1.154555e-01	ci left: 6.346263e-03	ci right 7.129525e-03	k: 1144	n:170000
MPP6   170000 perm   47 sec   (3641 perm/sec)   p_kst 6.729412e-03   p_cons 9.588647e-01   p_joint 1.455882e-02

Joint ci ratio: 7.913107e-02	ci left: 1.291747e-02	ci right 1.398717e-02	k: 2420	n:180000
Cons ci ratio: 1.912028e-03	ci left: 9.580120e-01	ci right 9.598510e-01	k: 172609	n:180000
KS ci ratio: 1.118019e-01	ci left: 6.403926e-03	ci right 7.167644e-03	k: 1220	n:180000
MPP6   180000 perm   50 sec   (3577 perm/sec)   p_kst 6.777778e-03   p_cons 9.589389e-01   p_joint 1.344444e-02

Joint ci ratio: 7.772493e-02	ci left: 1.269678e-02	ci right 1.372867e-02	k: 2509	n:190000
Cons ci ratio: 1.857340e-03	ci left: 9.581945e-01	ci right 9.599810e-01	k: 182228	n:190000
KS ci ratio: 1.087704e-01	ci left: 6.420021e-03	ci right 7.163568e-03	k: 1289	n:190000
MPP6   190000 perm   54 sec   (3520 perm/sec)   p_kst 6.784211e-03   p_cons 9.590947e-01   p_joint 1.320526e-02

Joint ci ratio: 7.657018e-02	ci left: 1.243945e-02	ci right 1.343474e-02	k: 2586	n:200000
Cons ci ratio: 1.806490e-03	ci left: 9.583844e-01	ci right 9.601222e-01	k: 191852	n:200000
KS ci ratio: 1.058162e-01	ci left: 6.454231e-03	ci right 7.180174e-03	k: 1362	n:200000
MPP6   200000 perm   58 sec   (3458 perm/sec)   p_kst 6.810000e-03   p_cons 9.592600e-01   p_joint 1.293000e-02

Joint ci ratio: 7.417829e-02	ci left: 1.263674e-02	ci right 1.361486e-02	k: 2755	n:210000
Cons ci ratio: 1.760650e-03	ci left: 9.585087e-01	ci right 9.602024e-01	k: 201466	n:210000
KS ci ratio: 1.033807e-01	ci left: 6.448312e-03	ci right 7.155881e-03	k: 1427	n:210000
MPP6   210000 perm   62 sec   (3409 perm/sec)   p_kst 6.795238e-03   p_cons 9.593619e-01   p_joint 1.311905e-02

Joint ci ratio: 7.476593e-02	ci left: 1.187928e-02	ci right 1.280637e-02	k: 2714	n:220000
Cons ci ratio: 1.720529e-03	ci left: 9.585119e-01	ci right 9.601669e-01	k: 211056	n:220000
KS ci ratio: 1.005983e-01	ci left: 6.509578e-03	ci right 7.203510e-03	k: 1507	n:220000
MPP6   220000 perm   65 sec   (3372 perm/sec)   p_kst 6.850000e-03   p_cons 9.593455e-01   p_joint 1.233636e-02

Joint ci ratio: 7.327177e-02	ci left: 1.184072e-02	ci right 1.274555e-02	k: 2826	n:230000
Cons ci ratio: 1.685749e-03	ci left: 9.583879e-01	ci right 9.600092e-01	k: 220617	n:230000
KS ci ratio: 9.868841e-02	ci left: 6.476677e-03	ci right 7.153233e-03	k: 1566	n:230000
MPP6   230000 perm   69 sec   (3336 perm/sec)   p_kst 6.808696e-03   p_cons 9.592043e-01   p_joint 1.228696e-02

Outputting figure to mutsig2_images.part000000000107/MPP6.6_1667_230000_0.0068087_0.9592_0.012287.png
                gene_name: MPP6
               theta_stop: 0.099 
                    nperm: 230000 
                     p_ks: 0.0068 
        ci_ks_bounds_left: 0.0065 
       ci_ks_bounds_right: 0.0072 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 24 percent done.
MRGPRD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.281585e-02	ci left: 3.457140e-01	ci right 3.645704e-01	k: 3551	n:10000
Cons ci ratio: 9.262256e-02	ci left: 1.448193e-01	ci right 1.589842e-01	k: 1518	n:10000
KS ci ratio: 1.441687e-02	ci left: 8.743904e-01	ci right 8.871869e-01	k: 8809	n:10000
MRGPRD   10000 perm   2 sec   (5779 perm/sec)   p_kst 8.809000e-01   p_cons 1.518000e-01   p_joint 3.551000e-01

Outputting figure to mutsig2_images.part000000000107/MRGPRD.6_970_10000_0.8809_0.1518_0.3551.png
                gene_name: MRGPRD
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 26 percent done.
MORC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.527199e-02	ci left: 4.186732e-01	ci right 4.381685e-01	k: 4284	n:10000
Cons ci ratio: 4.797082e-02	ci left: 3.906772e-01	ci right 4.099809e-01	k: 4003	n:10000
KS ci ratio: 5.184997e-02	ci left: 3.541627e-01	ci right 3.731168e-01	k: 3636	n:10000
MORC2   10000 perm   2 sec   (5508 perm/sec)   p_kst 3.636000e-01   p_cons 4.003000e-01   p_joint 4.284000e-01

Outputting figure to mutsig2_images.part000000000107/MORC2.5_3005_10000_0.3636_0.4003_0.4284.png
                gene_name: MORC2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 28 percent done.
MPHOSPH9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.247861e-02	ci left: 5.831949e-01	ci right 6.025510e-01	k: 5929	n:10000
Cons ci ratio: 3.546029e-02	ci left: 5.400858e-01	ci right 5.596852e-01	k: 5499	n:10000
KS ci ratio: 4.171224e-02	ci left: 4.590794e-01	ci right 4.787387e-01	k: 4689	n:10000
MPHOSPH9   10000 perm   2 sec   (5070 perm/sec)   p_kst 4.689000e-01   p_cons 5.499000e-01   p_joint 5.929000e-01

Outputting figure to mutsig2_images.part000000000107/MPHOSPH9.5_3176_10000_0.4689_0.5499_0.5929.png
                gene_name: MPHOSPH9
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 30 percent done.
MPO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.640765e-02	ci left: 2.497426e-01	ci right 2.669984e-01	k: 2583	n:10000
Cons ci ratio: 1.037097e-01	ci left: 1.184802e-01	ci right 1.315391e-01	k: 1249	n:10000
KS ci ratio: 4.805083e-02	ci left: 3.898806e-01	ci right 4.091780e-01	k: 3995	n:10000
MPO   10000 perm   2 sec   (5261 perm/sec)   p_kst 3.995000e-01   p_cons 1.249000e-01   p_joint 2.583000e-01

Joint ci ratio: 4.037854e-02	ci left: 3.137853e-01	ci right 3.267670e-01	k: 6405	n:20000
Cons ci ratio: 7.357079e-02	ci left: 1.197082e-01	ci right 1.289013e-01	k: 2485	n:20000
KS ci ratio: 3.448117e-02	ci left: 3.857236e-01	ci right 3.993077e-01	k: 7850	n:20000
MPO   20000 perm   4 sec   (4776 perm/sec)   p_kst 3.925000e-01   p_cons 1.242500e-01   p_joint 3.202500e-01

Outputting figure to mutsig2_images.part000000000107/MPO.5_2286_20000_0.3925_0.12425_0.32025.png
                gene_name: MPO
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 33 percent done.
MPP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.513557e-02	ci left: 8.635571e-01	ci right 8.768264e-01	k: 8703	n:10000
KS ci ratio: 6.415632e-03	ci left: 9.706895e-01	ci right 9.770303e-01	k: 9740	n:10000
MPP2   10000 perm   2 sec   (5590 perm/sec)   p_kst 9.740000e-01   p_cons 8.703000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MPP2.5_1707_10000_0.974_0.8703_1.png
                gene_name: MPP2
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
MPRIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.295449e-02	ci left: 3.445215e-01	ci right 3.633636e-01	k: 3539	n:10000
Cons ci ratio: 1.103187e-01	ci left: 1.058826e-01	ci right 1.183444e-01	k: 1120	n:10000
KS ci ratio: 4.499582e-02	ci left: 4.216640e-01	ci right 4.411760e-01	k: 4314	n:10000
MPRIP   10000 perm   2 sec   (5354 perm/sec)   p_kst 4.314000e-01   p_cons 1.120000e-01   p_joint 3.539000e-01

Joint ci ratio: 4.453673e-02	ci left: 2.729406e-01	ci right 2.854237e-01	k: 5583	n:20000
Cons ci ratio: 8.522918e-02	ci left: 9.155886e-02	ci right 9.975913e-02	k: 1912	n:20000
KS ci ratio: 3.183590e-02	ci left: 4.242719e-01	ci right 4.380481e-01	k: 8623	n:20000
MPRIP   20000 perm   4 sec   (4816 perm/sec)   p_kst 4.311500e-01   p_cons 9.560000e-02   p_joint 2.791500e-01

Outputting figure to mutsig2_images.part000000000107/MPRIP.5_3246_20000_0.43115_0.0956_0.27915.png
                gene_name: MPRIP
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.096 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.100 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 37 percent done.
MON1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.929540e-02	ci left: 6.321112e-01	ci right 6.510063e-01	k: 6416	n:10000
Cons ci ratio: 2.237232e-02	ci left: 7.457390e-01	ci right 7.627127e-01	k: 7543	n:10000
KS ci ratio: 4.593439e-02	ci left: 4.115964e-01	ci right 4.310494e-01	k: 4213	n:10000
MON1B   10000 perm   2 sec   (6540 perm/sec)   p_kst 4.213000e-01   p_cons 7.543000e-01   p_joint 6.416000e-01

Outputting figure to mutsig2_images.part000000000107/MON1B.4_1664_10000_0.4213_0.7543_0.6416.png
                gene_name: MON1B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 39 percent done.
MORC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.473782e-02	ci left: 3.296208e-01	ci right 3.482731e-01	k: 3389	n:10000
Cons ci ratio: 1.449914e-02	ci left: 8.731632e-01	ci right 8.860148e-01	k: 8797	n:10000
KS ci ratio: 6.827759e-02	ci left: 2.393626e-01	ci right 2.563846e-01	k: 2478	n:10000
MORC4   10000 perm   2 sec   (5550 perm/sec)   p_kst 2.478000e-01   p_cons 8.797000e-01   p_joint 3.389000e-01

Outputting figure to mutsig2_images.part000000000107/MORC4.4_2882_10000_0.2478_0.8797_0.3389.png
                gene_name: MORC4
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 41 percent done.
MOV10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.090368e-02	ci left: 7.703319e-01	ci right 7.867055e-01	k: 7786	n:10000
Cons ci ratio: 2.121859e-02	ci left: 7.650660e-01	ci right 7.815745e-01	k: 7734	n:10000
KS ci ratio: 5.875724e-02	ci left: 2.988593e-01	ci right 3.170527e-01	k: 3079	n:10000
MOV10   10000 perm   2 sec   (5244 perm/sec)   p_kst 3.079000e-01   p_cons 7.734000e-01   p_joint 7.786000e-01

Outputting figure to mutsig2_images.part000000000107/MOV10.4_3092_10000_0.3079_0.7734_0.7786.png
                gene_name: MOV10
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 43 percent done.
MPEG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.768586e-02	ci left: 3.066941e-01	ci right 3.250132e-01	k: 3158	n:10000
Cons ci ratio: 6.920559e-02	ci left: 2.344220e-01	ci right 2.513280e-01	k: 2428	n:10000
KS ci ratio: 9.800946e-02	ci left: 1.311004e-01	ci right 1.447113e-01	k: 1378	n:10000
MPEG1   10000 perm   2 sec   (5530 perm/sec)   p_kst 1.378000e-01   p_cons 2.428000e-01   p_joint 3.158000e-01

Outputting figure to mutsig2_images.part000000000107/MPEG1.4_2155_10000_0.1378_0.2428_0.3158.png
                gene_name: MPEG1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 46 percent done.
MPZL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.545351e-02	ci left: 6.943394e-01	ci right 7.123420e-01	k: 7034	n:10000
KS ci ratio: 1.688045e-02	ci left: 8.363308e-01	ci right 8.506684e-01	k: 8436	n:10000
MPZL2   10000 perm   2 sec   (6190 perm/sec)   p_kst 8.436000e-01   p_cons 7.034000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MPZL2.4_668_10000_0.8436_0.7034_1.png
                gene_name: MPZL2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
MRAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.279304e-02	ci left: 8.978526e-01	ci right 9.095111e-01	k: 9038	n:10000
KS ci ratio: 2.226974e-02	ci left: 7.474583e-01	ci right 7.643924e-01	k: 7560	n:10000
MRAP2   10000 perm   2 sec   (6529 perm/sec)   p_kst 7.560000e-01   p_cons 9.038000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MRAP2.4_630_10000_0.756_0.9038_1.png
                gene_name: MRAP2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
MRGPRX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.960819e-02	ci left: 6.271848e-01	ci right 6.461355e-01	k: 6367	n:10000
Cons ci ratio: 5.213117e-02	ci left: 3.516775e-01	ci right 3.706035e-01	k: 3611	n:10000
KS ci ratio: 1.348025e-02	ci left: 8.881088e-01	ci right 9.002605e-01	k: 8943	n:10000
MRGPRX3   10000 perm   2 sec   (5990 perm/sec)   p_kst 8.943000e-01   p_cons 3.611000e-01   p_joint 6.367000e-01

Outputting figure to mutsig2_images.part000000000107/MRGPRX3.4_973_10000_0.8943_0.3611_0.6367.png
                gene_name: MRGPRX3
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 52 percent done.
MOGS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.424714e-03	ci left: 9.784504e-01	ci right 9.838641e-01	k: 9813	n:10000
Cons ci ratio: 8.770970e-03	ci left: 9.480432e-01	ci right 9.564908e-01	k: 9524	n:10000
KS ci ratio: 2.167809e-02	ci left: 7.573729e-01	ci right 7.740721e-01	k: 7658	n:10000
MOGS   10000 perm   2 sec   (5800 perm/sec)   p_kst 7.658000e-01   p_cons 9.524000e-01   p_joint 9.813000e-01

Outputting figure to mutsig2_images.part000000000107/MOGS.3_2530_10000_0.7658_0.9524_0.9813.png
                gene_name: MOGS
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 54 percent done.
MOS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.521587e-02	ci left: 6.982727e-01	ci right 7.162065e-01	k: 7073	n:10000
Cons ci ratio: 5.556630e-02	ci left: 3.229685e-01	ci right 3.415293e-01	k: 3322	n:10000
KS ci ratio: 2.382713e-02	ci left: 7.213844e-01	ci right 7.388814e-01	k: 7302	n:10000
MOS   10000 perm   1 sec   (6978 perm/sec)   p_kst 7.302000e-01   p_cons 3.322000e-01   p_joint 7.073000e-01

Outputting figure to mutsig2_images.part000000000107/MOS.3_1045_10000_0.7302_0.3322_0.7073.png
                gene_name: MOS
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 57 percent done.
MPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.749121e-02	ci left: 5.123546e-01	ci right 5.320325e-01	k: 5222	n:10000
Cons ci ratio: 6.881274e-02	ci left: 2.364969e-01	ci right 2.534520e-01	k: 2449	n:10000
KS ci ratio: 1.738916e-02	ci left: 8.281881e-01	ci right 8.428159e-01	k: 8356	n:10000
MPP1   10000 perm   2 sec   (6100 perm/sec)   p_kst 8.356000e-01   p_cons 2.449000e-01   p_joint 5.222000e-01

Outputting figure to mutsig2_images.part000000000107/MPP1.3_1465_10000_0.8356_0.2449_0.5222.png
                gene_name: MPP1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 59 percent done.
MPP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.631366e-02	ci left: 5.282688e-01	ci right 5.479090e-01	k: 5381	n:10000
KS ci ratio: 2.083093e-02	ci left: 7.715474e-01	ci right 7.878893e-01	k: 7798	n:10000
MPP3   10000 perm   2 sec   (6106 perm/sec)   p_kst 7.798000e-01   p_cons 5.381000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MPP3.3_1830_10000_0.7798_0.5381_1.png
                gene_name: MPP3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
MPP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.206990e-02	ci left: 5.893165e-01	ci right 6.086258e-01	k: 5990	n:10000
Cons ci ratio: 4.611379e-02	ci left: 4.097030e-01	ci right 4.291440e-01	k: 4194	n:10000
KS ci ratio: 2.768949e-02	ci left: 6.577660e-01	ci right 6.763366e-01	k: 6671	n:10000
MPP5   10000 perm   2 sec   (5794 perm/sec)   p_kst 6.671000e-01   p_cons 4.194000e-01   p_joint 5.990000e-01

Outputting figure to mutsig2_images.part000000000107/MPP5.3_2080_10000_0.6671_0.4194_0.599.png
                gene_name: MPP5
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 63 percent done.
MPP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.789526e-02	ci left: 2.414380e-01	ci right 2.585078e-01	k: 2499	n:10000
Cons ci ratio: 4.941957e-02	ci left: 3.765422e-01	ci right 3.957242e-01	k: 3861	n:10000
KS ci ratio: 8.329855e-02	ci left: 1.736942e-01	ci right 1.888919e-01	k: 1812	n:10000
MPP7   10000 perm   2 sec   (5698 perm/sec)   p_kst 1.812000e-01   p_cons 3.861000e-01   p_joint 2.499000e-01

Outputting figure to mutsig2_images.part000000000107/MPP7.3_1795_10000_0.1812_0.3861_0.2499.png
                gene_name: MPP7
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 65 percent done.
MPPED2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.010390e-02	ci left: 3.700748e-01	ci right 3.891954e-01	k: 3796	n:10000
Cons ci ratio: 8.310267e-02	ci left: 1.743827e-01	ci right 1.896031e-01	k: 1819	n:10000
KS ci ratio: 5.639027e-02	ci left: 3.165168e-01	ci right 3.349849e-01	k: 3257	n:10000
MPPED2   10000 perm   2 sec   (6232 perm/sec)   p_kst 3.257000e-01   p_cons 1.819000e-01   p_joint 3.796000e-01

Outputting figure to mutsig2_images.part000000000107/MPPED2.3_981_10000_0.3257_0.1819_0.3796.png
                gene_name: MPPED2
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 67 percent done.
MRGPRX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.148471e-02	ci left: 7.606116e-01	ci right 7.772314e-01	k: 7690	n:10000
KS ci ratio: 1.614530e-02	ci left: 8.479456e-01	ci right 8.618469e-01	k: 8550	n:10000
MRGPRX4   10000 perm   2 sec   (6109 perm/sec)   p_kst 8.550000e-01   p_cons 7.690000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MRGPRX4.3_973_10000_0.855_0.769_1.png
                gene_name: MRGPRX4
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
MRPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.099325e-01	ci left: 1.065655e-01	ci right 1.190610e-01	k: 1127	n:10000
Cons ci ratio: 6.033790e-02	ci left: 2.877571e-01	ci right 3.057615e-01	k: 2967	n:10000
KS ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
MRPL1   10000 perm   2 sec   (6267 perm/sec)   p_kst 6.190000e-02   p_cons 2.967000e-01   p_joint 1.127000e-01

Joint ci ratio: 7.173704e-02	ci left: 1.252205e-01	ci right 1.345874e-01	k: 2597	n:20000
Cons ci ratio: 4.462541e-02	ci left: 2.721461e-01	ci right 2.846184e-01	k: 5567	n:20000
KS ci ratio: 1.101019e-01	ci left: 5.630945e-02	ci right 6.291930e-02	k: 1191	n:20000
MRPL1   20000 perm   4 sec   (5607 perm/sec)   p_kst 5.955000e-02   p_cons 2.783500e-01   p_joint 1.298500e-01

Joint ci ratio: 6.189457e-02	ci left: 1.142712e-01	ci right 1.216030e-01	k: 3537	n:30000
Cons ci ratio: 3.639128e-02	ci left: 2.737971e-01	ci right 2.839791e-01	k: 8366	n:30000
KS ci ratio: 8.807929e-02	ci left: 5.919903e-02	ci right 6.468618e-02	k: 1857	n:30000
MRPL1   30000 perm   6 sec   (5319 perm/sec)   p_kst 6.190000e-02   p_cons 2.788667e-01   p_joint 1.179000e-01

Outputting figure to mutsig2_images.part000000000107/MRPL1.3_1014_30000_0.0619_0.27887_0.1179.png
                gene_name: MRPL1
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 72 percent done.
MORF4L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.637034e-02	ci left: 4.070126e-01	ci right 4.264360e-01	k: 4167	n:10000
Cons ci ratio: 3.827232e-02	ci left: 5.020507e-01	ci right 5.217424e-01	k: 5119	n:10000
KS ci ratio: 6.618316e-02	ci left: 2.510282e-01	ci right 2.683120e-01	k: 2596	n:10000
MORF4L1   10000 perm   2 sec   (6378 perm/sec)   p_kst 2.596000e-01   p_cons 5.119000e-01   p_joint 4.167000e-01

Outputting figure to mutsig2_images.part000000000107/MORF4L1.2_1141_10000_0.2596_0.5119_0.4167.png
                gene_name: MORF4L1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 74 percent done.
MORF4L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.701460e-01	ci left: 4.609774e-02	ci right 5.476655e-02	k: 503	n:10000
Cons ci ratio: 2.418322e-01	ci left: 2.249916e-02	ci right 2.878131e-02	k: 255	n:10000
KS ci ratio: 4.520736e-02	ci left: 4.193710e-01	ci right 4.388703e-01	k: 4291	n:10000
MORF4L2   10000 perm   2 sec   (6301 perm/sec)   p_kst 4.291000e-01   p_cons 2.550000e-02   p_joint 5.030000e-02

Joint ci ratio: 1.463025e-01	ci left: 3.210991e-02	ci right 3.722654e-02	k: 692	n:20000
Cons ci ratio: 1.710052e-01	ci left: 2.340739e-02	ci right 2.783199e-02	k: 511	n:20000
KS ci ratio: 3.206735e-02	ci left: 4.207295e-01	ci right 4.344916e-01	k: 8552	n:20000
MORF4L2   20000 perm   4 sec   (5546 perm/sec)   p_kst 4.276000e-01   p_cons 2.555000e-02   p_joint 3.460000e-02

Joint ci ratio: 8.997877e-02	ci left: 5.681660e-02	ci right 6.220243e-02	k: 1784	n:30000
Cons ci ratio: 1.404733e-01	ci left: 2.352025e-02	ci right 2.710582e-02	k: 758	n:30000
KS ci ratio: 2.610715e-02	ci left: 4.234231e-01	ci right 4.346573e-01	k: 12871	n:30000
MORF4L2   30000 perm   6 sec   (5242 perm/sec)   p_kst 4.290333e-01   p_cons 2.526667e-02   p_joint 5.946667e-02

Joint ci ratio: 9.384066e-02	ci left: 3.983513e-02	ci right 4.378174e-02	k: 1671	n:40000
Cons ci ratio: 1.214693e-01	ci left: 2.383164e-02	ci right 2.693778e-02	k: 1014	n:40000
KS ci ratio: 2.266911e-02	ci left: 4.228944e-01	ci right 4.326161e-01	k: 17110	n:40000
MORF4L2   40000 perm   8 sec   (5065 perm/sec)   p_kst 4.277500e-01   p_cons 2.535000e-02   p_joint 4.177500e-02

Joint ci ratio: 9.717381e-02	ci left: 2.998627e-02	ci right 3.306843e-02	k: 1575	n:50000
Cons ci ratio: 1.081981e-01	ci left: 2.419428e-02	ci right 2.698117e-02	k: 1278	n:50000
KS ci ratio: 2.022684e-02	ci left: 4.245961e-01	ci right 4.332921e-01	k: 21447	n:50000
MORF4L2   50000 perm   10 sec   (4923 perm/sec)   p_kst 4.289400e-01   p_cons 2.556000e-02   p_joint 3.150000e-02

Joint ci ratio: 8.512876e-02	ci left: 3.267840e-02	ci right 3.560022e-02	k: 2047	n:60000
Cons ci ratio: 8.949703e-02	ci left: 2.959497e-02	ci right 3.238397e-02	k: 1858	n:60000
KS ci ratio: 1.851772e-02	ci left: 4.235701e-01	ci right 4.315036e-01	k: 25652	n:60000
MORF4L2   60000 perm   12 sec   (4860 perm/sec)   p_kst 4.275333e-01   p_cons 3.096667e-02   p_joint 3.411667e-02

Outputting figure to mutsig2_images.part000000000107/MORF4L2.2_871_60000_0.42753_0.030967_0.034117.png
                gene_name: MORF4L2
               theta_stop: 0.089 
                    nperm: 60000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 76 percent done.
MORN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.175058e-02	ci left: 7.561585e-01	ci right 7.728871e-01	k: 7646	n:10000
Cons ci ratio: 3.935118e-02	ci left: 4.881520e-01	ci right 5.078491e-01	k: 4980	n:10000
KS ci ratio: 3.034183e-02	ci left: 6.157275e-01	ci right 6.347995e-01	k: 6253	n:10000
MORN5   10000 perm   1 sec   (6987 perm/sec)   p_kst 6.253000e-01   p_cons 4.980000e-01   p_joint 7.646000e-01

Outputting figure to mutsig2_images.part000000000107/MORN5.2_506_10000_0.6253_0.498_0.7646.png
                gene_name: MORN5
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 78 percent done.
MOSPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.140007e-02	ci left: 7.620288e-01	ci right 7.786135e-01	k: 7704	n:10000
KS ci ratio: 1.434813e-02	ci left: 8.754132e-01	ci right 8.881634e-01	k: 8819	n:10000
MOSPD1   10000 perm   1 sec   (6942 perm/sec)   p_kst 8.819000e-01   p_cons 7.704000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MOSPD1.2_662_10000_0.8819_0.7704_1.png
                gene_name: MOSPD1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
MOSPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.227196e-02	ci left: 2.748786e-01	ci right 2.926475e-01	k: 2837	n:10000
Cons ci ratio: 6.422738e-02	ci left: 2.626030e-01	ci right 2.801304e-01	k: 2713	n:10000
KS ci ratio: 8.438058e-02	ci left: 1.699576e-01	ci right 1.850308e-01	k: 1774	n:10000
MOSPD2   10000 perm   2 sec   (6499 perm/sec)   p_kst 1.774000e-01   p_cons 2.713000e-01   p_joint 2.837000e-01

Outputting figure to mutsig2_images.part000000000107/MOSPD2.2_1617_10000_0.1774_0.2713_0.2837.png
                gene_name: MOSPD2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 83 percent done.
MPHOSPH10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.031594e-02	ci left: 6.161294e-01	ci right 6.351973e-01	k: 6257	n:10000
Cons ci ratio: 5.530440e-02	ci left: 3.250533e-01	ci right 3.436433e-01	k: 3343	n:10000
KS ci ratio: 3.214337e-02	ci left: 5.882125e-01	ci right 6.075305e-01	k: 5979	n:10000
MPHOSPH10   10000 perm   2 sec   (6275 perm/sec)   p_kst 5.979000e-01   p_cons 3.343000e-01   p_joint 6.257000e-01

Outputting figure to mutsig2_images.part000000000107/MPHOSPH10.2_2090_10000_0.5979_0.3343_0.6257.png
                gene_name: MPHOSPH10
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 85 percent done.
MPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.223301e-02	ci left: 2.192151e-01	ci right 2.357440e-01	k: 2274	n:10000
Cons ci ratio: 8.343912e-02	ci left: 1.732025e-01	ci right 1.883840e-01	k: 1807	n:10000
KS ci ratio: 2.737222e-02	ci left: 6.629006e-01	ci right 6.813991e-01	k: 6722	n:10000
MPL   10000 perm   2 sec   (6309 perm/sec)   p_kst 6.722000e-01   p_cons 1.807000e-01   p_joint 2.274000e-01

Outputting figure to mutsig2_images.part000000000107/MPL.2_1956_10000_0.6722_0.1807_0.2274.png
                gene_name: MPL
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 87 percent done.
MR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.969375e-02	ci left: 2.922170e-01	ci right 3.102989e-01	k: 3012	n:10000
Cons ci ratio: 1.156770e-01	ci left: 9.701134e-02	ci right 1.090210e-01	k: 1029	n:10000
KS ci ratio: 2.173850e-02	ci left: 7.563609e-01	ci right 7.730846e-01	k: 7648	n:10000
MR1   10000 perm   1 sec   (6684 perm/sec)   p_kst 7.648000e-01   p_cons 1.029000e-01   p_joint 3.012000e-01

Joint ci ratio: 4.857960e-02	ci left: 2.395972e-01	ci right 2.515768e-01	k: 4911	n:20000
Cons ci ratio: 8.114045e-02	ci left: 1.002440e-01	ci right 1.087714e-01	k: 2089	n:20000
KS ci ratio: 1.557644e-02	ci left: 7.540185e-01	ci right 7.659058e-01	k: 15200	n:20000
MR1   20000 perm   3 sec   (5774 perm/sec)   p_kst 7.600000e-01   p_cons 1.044500e-01   p_joint 2.455500e-01

Outputting figure to mutsig2_images.part000000000107/MR1.2_1050_20000_0.76_0.10445_0.24555.png
                gene_name: MR1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 89 percent done.
MRAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.249207e-02	ci left: 5.829942e-01	ci right 6.023518e-01	k: 5927	n:10000
Cons ci ratio: 5.392946e-02	ci left: 3.362752e-01	ci right 3.550148e-01	k: 3456	n:10000
KS ci ratio: 2.499685e-02	ci left: 7.019041e-01	ci right 7.197729e-01	k: 7109	n:10000
MRAP   10000 perm   2 sec   (5829 perm/sec)   p_kst 7.109000e-01   p_cons 3.456000e-01   p_joint 5.927000e-01

Outputting figure to mutsig2_images.part000000000107/MRAP.2_638_10000_0.7109_0.3456_0.5927.png
                gene_name: MRAP
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 91 percent done.
MRI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.046834e-02	ci left: 9.284392e-01	ci right 9.383065e-01	k: 9335	n:10000
KS ci ratio: 2.464460e-02	ci left: 7.077562e-01	ci right 7.255175e-01	k: 7167	n:10000
MRI1   10000 perm   1 sec   (6715 perm/sec)   p_kst 7.167000e-01   p_cons 9.335000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000107/MRI1.2_1227_10000_0.7167_0.9335_1.png
                gene_name: MRI1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
MRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.029006e-02	ci left: 6.165313e-01	ci right 6.355952e-01	k: 6261	n:10000
Cons ci ratio: 3.156504e-02	ci left: 5.969456e-01	ci right 6.161923e-01	k: 6066	n:10000
KS ci ratio: 2.394806e-02	ci left: 7.193647e-01	ci right 7.369022e-01	k: 7282	n:10000
MRM1   10000 perm   1 sec   (7089 perm/sec)   p_kst 7.282000e-01   p_cons 6.066000e-01   p_joint 6.261000e-01

Outputting figure to mutsig2_images.part000000000107/MRM1.2_1082_10000_0.7282_0.6066_0.6261.png
                gene_name: MRM1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 96 percent done.
MRPL18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.959588e-02	ci left: 4.850534e-01	ci right 5.047496e-01	k: 4949	n:10000
Cons ci ratio: 5.627496e-02	ci left: 3.174100e-01	ci right 3.358911e-01	k: 3266	n:10000
KS ci ratio: 2.365186e-02	ci left: 7.243132e-01	ci right 7.417508e-01	k: 7331	n:10000
MRPL18   10000 perm   1 sec   (7062 perm/sec)   p_kst 7.331000e-01   p_cons 3.266000e-01   p_joint 4.949000e-01

Outputting figure to mutsig2_images.part000000000107/MRPL18.2_559_10000_0.7331_0.3266_0.4949.png
                gene_name: MRPL18
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 98 percent done.
MRPL22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.313530e-02	ci left: 5.734637e-01	ci right 5.928878e-01	k: 5832	n:10000
Cons ci ratio: 1.662397e-02	ci left: 8.404046e-01	ci right 8.545923e-01	k: 8476	n:10000
KS ci ratio: 7.901581e-02	ci left: 1.896376e-01	ci right 2.053390e-01	k: 1974	n:10000
MRPL22   10000 perm   1 sec   (7389 perm/sec)   p_kst 1.974000e-01   p_cons 8.476000e-01   p_joint 5.832000e-01

Outputting figure to mutsig2_images.part000000000107/MRPL22.2_649_10000_0.1974_0.8476_0.5832.png
                gene_name: MRPL22
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000107
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 107 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1711>
Subject: Job 9894019: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1711>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000108> was used as the working directory.
Started at Sat Oct  6 00:18:50 2012
Results reported at Sat Oct  6 00:57:22 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000108.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000108.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 108  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000108.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2365.65 sec.
    Max Memory :      3561 MB
    Max Swap   :      5950 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
108
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 108
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 108: processing genes 9647 - 9736
Calculating significance of each gene.
Using projection method.
9647	MRPL23	1
9648	MRPL24	5.171071e-01
9649	MRPL27	5.953010e-01
9650	MRPL28	1
9651	MRPL3	5.944585e-01
9652	MRPL30	1
9653	MRPL32	2.777275e-01
9654	MRPL33	2.494397e-01
9655	MRPL34	1
9656	MRPL35	1
9657	MRPL36	1
9658	MRPL37	3.922810e-01
9659	MRPL38	1
9660	MRPL39	4.522417e-01
9661	MRPL4	5.081923e-01
9662	MRPL40	1
9663	MRPL41	1
9664	MRPL42	1
9665	MRPL43	1
9666	MRPL44	7.852364e-02
9667	MRPL45	4.926606e-01
9668	MRPL46	5.045571e-01
9669	MRPL47	2.727673e-01
9670	MRPL48	1
9671	MRPL49	1
9672	MRPL50	3.404890e-01
9673	MRPL51	3.252558e-01
9674	MRPL52	1
9675	MRPL53	2.256294e-01
9676	MRPL54	1
9677	MRPL55	1
9678	MRPL9	3.774037e-01
9679	MRPS10	1
9680	MRPS11	1.668587e-01
9681	MRPS12	1
9682	MRPS14	4.632388e-01
9683	MRPS15	7.006634e-01
9684	MRPS16	1
9685	MRPS17	1
9686	MRPS18A	1
9687	MRPS18B	4.855126e-01
9688	MRPS18C	1.522875e-01
9689	MRPS2	5.529780e-01
9690	MRPS21	1.582673e-01
9691	MRPS22	5.779364e-01
9692	MRPS23	1
In gene MRPS24 the following bins exceed PROBCAP:
    READ-AG-3605	categ 6	N = 404     n = 1	mu =   1.38e-07
9693	MRPS24	1.086830e-01
9694	MRPS25	4.234764e-01
9695	MRPS26	1
9696	MRPS27	6.099685e-01
9697	MRPS28	6.339689e-01
9698	MRPS30	6.047076e-01
9699	MRPS31	1.932610e-01
9700	MRPS33	1
9701	MRPS34	1
9702	MRPS35	1
9703	MRPS36	7.222649e-03
9704	MRPS5	6.006930e-01
9705	MRPS6	4.530725e-01
9706	MRPS7	1
9707	MRPS9	5.746918e-01
9708	MRRF	6.075513e-01
9709	MRS2	6.908955e-01
9710	MRTO4	1
9711	MRVI1	8.879759e-01
9712	MS4A1	3.293336e-02
9713	MS4A10	1.177355e-02
9714	MS4A12	3.191346e-01
9715	MS4A13	1.572028e-01
9716	MS4A14	3.516834e-02
9717	MS4A15	4.105249e-01
9718	MS4A2	1.481542e-01
9719	MS4A3	1
9720	MS4A4A	6.790939e-01
9721	MS4A5	3.536828e-03
9722	MS4A6A	1
9723	MS4A6E	1
9724	MS4A7	3.946701e-02
9725	MS4A8B	4.972649e-01
9726	MSC	1.530746e-01
9727	MSGN1	1
9728	MSH2	6.257352e-01
9729	MSH3	5.674779e-01
9730	MSH4	3.609377e-01
9731	MSH5	2.640040e-01
9732	MSH6	6.346480e-02
9733	MSI1	8.757555e-01
9734	MSI2	2.711035e-01
9735	MSL1	4.758941e-01
9736	MSL2	9.806031e-02
Done

Running MutSig 2:
Scatter job 108: processing genes 9647 - 9736
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MSH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.548479e-02	ci left: 2.550834e-01	ci right 2.724544e-01	k: 2637	n:10000
Cons ci ratio: 5.893690e-02	ci left: 2.975703e-01	ci right 3.157424e-01	k: 3066	n:10000
KS ci ratio: 6.914919e-02	ci left: 2.347184e-01	ci right 2.516315e-01	k: 2431	n:10000
MSH6   10000 perm   2 sec   (4086 perm/sec)   p_kst 2.431000e-01   p_cons 3.066000e-01   p_joint 2.637000e-01

Outputting figure to mutsig2_images.part000000000108/MSH6.14_4123_10000_0.2431_0.3066_0.2637.png
                gene_name: MSH6
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 2 percent done.
MS4A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.915327e-02	ci left: 1.547295e-01	ci right 1.692679e-01	k: 1619	n:10000
Cons ci ratio: 4.820135e-02	ci left: 3.883871e-01	ci right 4.076723e-01	k: 3980	n:10000
KS ci ratio: 8.748333e-02	ci left: 1.598358e-01	ci right 1.745586e-01	k: 1671	n:10000
MS4A14   10000 perm   2 sec   (5353 perm/sec)   p_kst 1.671000e-01   p_cons 3.980000e-01   p_joint 1.619000e-01

Outputting figure to mutsig2_images.part000000000108/MS4A14.9_2060_10000_0.1671_0.398_0.1619.png
                gene_name: MS4A14
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 5 percent done.
MSH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.222915e-02	ci left: 1.458981e-01	ci right 1.601047e-01	k: 1529	n:10000
Cons ci ratio: 3.300599e-02	ci left: 5.753695e-01	ci right 5.947809e-01	k: 5851	n:10000
KS ci ratio: 1.408318e-01	ci left: 6.681548e-02	ci right 7.703558e-02	k: 718	n:10000
MSH2   10000 perm   2 sec   (4892 perm/sec)   p_kst 7.180000e-02   p_cons 5.851000e-01   p_joint 1.529000e-01

Joint ci ratio: 5.802403e-02	ci left: 1.803811e-01	ci right 1.912104e-01	k: 3715	n:20000
Cons ci ratio: 2.448870e-02	ci left: 5.546897e-01	ci right 5.684924e-01	k: 11232	n:20000
KS ci ratio: 1.003771e-01	ci left: 6.728287e-02	ci right 7.444250e-02	k: 1416	n:20000
MSH2   20000 perm   5 sec   (4421 perm/sec)   p_kst 7.080000e-02   p_cons 5.616000e-01   p_joint 1.857500e-01

Joint ci ratio: 5.803544e-02	ci left: 1.281559e-01	ci right 1.358489e-01	k: 3959	n:30000
Cons ci ratio: 1.924913e-02	ci left: 5.746245e-01	ci right 5.858266e-01	k: 17407	n:30000
KS ci ratio: 8.070842e-02	ci left: 6.995027e-02	ci right 7.586609e-02	k: 2186	n:30000
MSH2   30000 perm   7 sec   (4245 perm/sec)   p_kst 7.286667e-02   p_cons 5.802333e-01   p_joint 1.319667e-01

Outputting figure to mutsig2_images.part000000000108/MSH2.7_2869_30000_0.072867_0.58023_0.13197.png
                gene_name: MSH2
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 7 percent done.
MSH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.966875e-01	ci left: 3.443296e-02	ci right 4.203907e-02	k: 381	n:10000
Cons ci ratio: 9.258663e-02	ci left: 1.449173e-01	ci right 1.590860e-01	k: 1519	n:10000
KS ci ratio: 1.453474e-01	ci left: 6.285242e-02	ci right 7.280114e-02	k: 677	n:10000
MSH3   10000 perm   2 sec   (5233 perm/sec)   p_kst 6.770000e-02   p_cons 1.519000e-01   p_joint 3.810000e-02

Joint ci ratio: 9.589858e-02	ci left: 7.339088e-02	ci right 8.083263e-02	k: 1541	n:20000
Cons ci ratio: 6.792498e-02	ci left: 1.378798e-01	ci right 1.476244e-01	k: 2854	n:20000
KS ci ratio: 1.052995e-01	ci left: 6.137797e-02	ci right 6.824922e-02	k: 1295	n:20000
MSH3   20000 perm   4 sec   (4669 perm/sec)   p_kst 6.475000e-02   p_cons 1.427000e-01   p_joint 7.705000e-02

Joint ci ratio: 9.627460e-02	ci left: 4.984009e-02	ci right 5.491370e-02	k: 1570	n:30000
Cons ci ratio: 5.299770e-02	ci left: 1.501303e-01	ci right 1.583367e-01	k: 4626	n:30000
KS ci ratio: 8.502258e-02	ci left: 6.334662e-02	ci right 6.900442e-02	k: 1984	n:30000
MSH3   30000 perm   7 sec   (4461 perm/sec)   p_kst 6.613333e-02   p_cons 1.542000e-01   p_joint 5.233333e-02

Outputting figure to mutsig2_images.part000000000108/MSH3.7_3510_30000_0.066133_0.1542_0.052333.png
                gene_name: MSH3
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.055 

Current progress: 10 percent done.
MSH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.642083e-02	ci left: 6.784124e-01	ci right 6.966782e-01	k: 6876	n:10000
Cons ci ratio: 3.008344e-02	ci left: 6.197470e-01	ci right 6.387777e-01	k: 6293	n:10000
KS ci ratio: 3.613146e-02	ci left: 5.307719e-01	ci right 5.504044e-01	k: 5406	n:10000
MSH4   10000 perm   2 sec   (5238 perm/sec)   p_kst 5.406000e-01   p_cons 6.293000e-01   p_joint 6.876000e-01

Outputting figure to mutsig2_images.part000000000108/MSH4.7_2891_10000_0.5406_0.6293_0.6876.png
                gene_name: MSH4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 12 percent done.
MS4A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.608541e-02	ci left: 4.100020e-01	ci right 4.294448e-01	k: 4197	n:10000
Cons ci ratio: 1.085809e-01	ci left: 1.090053e-01	ci right 1.216198e-01	k: 1152	n:10000
KS ci ratio: 1.122343e-02	ci left: 9.189410e-01	ci right 9.294103e-01	k: 9243	n:10000
MS4A5   10000 perm   2 sec   (6045 perm/sec)   p_kst 9.243000e-01   p_cons 1.152000e-01   p_joint 4.197000e-01

Joint ci ratio: 2.631098e-02	ci left: 5.190515e-01	ci right 5.329409e-01	k: 10520	n:20000
Cons ci ratio: 7.668576e-02	ci left: 1.111014e-01	ci right 1.200107e-01	k: 2310	n:20000
KS ci ratio: 8.069550e-03	ci left: 9.180946e-01	ci right 9.255823e-01	k: 18438	n:20000
MS4A5   20000 perm   5 sec   (4220 perm/sec)   p_kst 9.219000e-01   p_cons 1.155000e-01   p_joint 5.260000e-01

Outputting figure to mutsig2_images.part000000000108/MS4A5.6_623_20000_0.9219_0.1155_0.526.png
                gene_name: MS4A5
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 14 percent done.
MSL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.034183e-02	ci left: 6.157275e-01	ci right 6.347995e-01	k: 6253	n:10000
Cons ci ratio: 2.960179e-02	ci left: 6.272853e-01	ci right 6.462349e-01	k: 6368	n:10000
KS ci ratio: 3.723660e-02	ci left: 5.157568e-01	ci right 5.354283e-01	k: 5256	n:10000
MSL2   10000 perm   2 sec   (5296 perm/sec)   p_kst 5.256000e-01   p_cons 6.368000e-01   p_joint 6.253000e-01

Outputting figure to mutsig2_images.part000000000108/MSL2.6_1742_10000_0.5256_0.6368_0.6253.png
                gene_name: MSL2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 17 percent done.
MRPL44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.486017e-02	ci left: 3.286278e-01	ci right 3.472667e-01	k: 3379	n:10000
Cons ci ratio: 5.200715e-02	ci left: 3.527710e-01	ci right 3.717094e-01	k: 3622	n:10000
KS ci ratio: 7.258412e-02	ci left: 2.175373e-01	ci right 2.340227e-01	k: 2257	n:10000
MRPL44   10000 perm   2 sec   (5706 perm/sec)   p_kst 2.257000e-01   p_cons 3.622000e-01   p_joint 3.379000e-01

Outputting figure to mutsig2_images.part000000000108/MRPL44.5_1015_10000_0.2257_0.3622_0.3379.png
                gene_name: MRPL44
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 19 percent done.
MSH5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
Cons ci ratio: 5.830139e-01	ci left: 3.198812e-03	ci right 5.902342e-03	k: 44	n:10000
KS ci ratio: 1.174650e-01	ci left: 9.428457e-02	ci right 1.061495e-01	k: 1001	n:10000
MSH5   10000 perm   2 sec   (4755 perm/sec)   p_kst 1.001000e-01   p_cons 4.400000e-03   p_joint 7.700000e-03

Joint ci ratio: 2.703794e-01	ci left: 8.993904e-03	ci right 1.185112e-02	k: 207	n:20000
Cons ci ratio: 3.693575e-01	ci left: 4.567803e-03	ci right 6.679840e-03	k: 111	n:20000
KS ci ratio: 8.433034e-02	ci left: 9.337356e-02	ci right 1.016439e-01	k: 1949	n:20000
MSH5   20000 perm   5 sec   (4108 perm/sec)   p_kst 9.745000e-02   p_cons 5.550000e-03   p_joint 1.035000e-02

Joint ci ratio: 2.397339e-01	ci left: 7.774275e-03	ci right 9.922465e-03	k: 264	n:30000
Cons ci ratio: 3.527233e-01	ci left: 3.378230e-03	ci right 4.853689e-03	k: 122	n:30000
KS ci ratio: 6.978492e-02	ci left: 9.183592e-02	ci right 9.850938e-02	k: 2854	n:30000
MSH5   30000 perm   7 sec   (4049 perm/sec)   p_kst 9.513333e-02   p_cons 4.066667e-03   p_joint 8.800000e-03

Joint ci ratio: 1.867057e-01	ci left: 9.881744e-03	ci right 1.194018e-02	k: 435	n:40000
Cons ci ratio: 2.982502e-01	ci left: 3.659335e-03	ci right 4.964242e-03	k: 171	n:40000
KS ci ratio: 6.043279e-02	ci left: 9.229148e-02	ci right 9.806745e-02	k: 3806	n:40000
MSH5   40000 perm   12 sec   (3378 perm/sec)   p_kst 9.515000e-02   p_cons 4.275000e-03   p_joint 1.087500e-02

Joint ci ratio: 1.775008e-01	ci left: 8.802120e-03	ci right 1.053552e-02	k: 482	n:50000
Cons ci ratio: 2.680186e-01	ci left: 3.689404e-03	ci right 4.849313e-03	k: 212	n:50000
KS ci ratio: 5.397609e-02	ci left: 9.283861e-02	ci right 9.800847e-02	k: 4770	n:50000
MSH5   50000 perm   16 sec   (3055 perm/sec)   p_kst 9.540000e-02   p_cons 4.240000e-03   p_joint 9.640000e-03

Joint ci ratio: 1.668400e-01	ci left: 8.355670e-03	ci right 9.892375e-03	k: 546	n:60000
Cons ci ratio: 2.272808e-01	ci left: 4.372714e-03	ci right 5.509318e-03	k: 295	n:60000
KS ci ratio: 4.917458e-02	ci left: 9.340683e-02	ci right 9.813236e-02	k: 5745	n:60000
MSH5   60000 perm   20 sec   (2956 perm/sec)   p_kst 9.575000e-02   p_cons 4.916667e-03   p_joint 9.100000e-03

Joint ci ratio: 1.186925e-01	ci left: 1.443145e-02	ci right 1.626619e-02	k: 1073	n:70000
Cons ci ratio: 2.139790e-01	ci left: 4.260893e-03	ci right 5.295101e-03	k: 333	n:70000
KS ci ratio: 4.547686e-02	ci left: 9.377075e-02	ci right 9.814852e-02	k: 6716	n:70000
MSH5   70000 perm   25 sec   (2833 perm/sec)   p_kst 9.594286e-02   p_cons 4.757143e-03   p_joint 1.532857e-02

Joint ci ratio: 1.298559e-01	ci left: 1.053068e-02	ci right 1.200509e-02	k: 900	n:80000
Cons ci ratio: 1.995597e-01	ci left: 4.320966e-03	ci right 5.290483e-03	k: 383	n:80000
KS ci ratio: 4.264604e-02	ci left: 9.348421e-02	ci right 9.757018e-02	k: 7641	n:80000
MSH5   80000 perm   29 sec   (2792 perm/sec)   p_kst 9.551250e-02   p_cons 4.787500e-03   p_joint 1.125000e-02

Joint ci ratio: 1.027248e-01	ci left: 1.510367e-02	ci right 1.674996e-02	k: 1432	n:90000
Cons ci ratio: 1.890282e-01	ci left: 4.305975e-03	ci right 5.215287e-03	k: 427	n:90000
KS ci ratio: 4.003549e-02	ci left: 9.433612e-02	ci right 9.820106e-02	k: 8663	n:90000
MSH5   90000 perm   32 sec   (2834 perm/sec)   p_kst 9.625556e-02   p_cons 4.744444e-03   p_joint 1.591111e-02

Joint ci ratio: 9.964527e-02	ci left: 1.448004e-02	ci right 1.600826e-02	k: 1523	n:100000
Cons ci ratio: 1.792439e-01	ci left: 4.333269e-03	ci right 5.195842e-03	k: 475	n:100000
KS ci ratio: 3.795847e-02	ci left: 9.453781e-02	ci right 9.820564e-02	k: 9636	n:100000
MSH5   100000 perm   35 sec   (2885 perm/sec)   p_kst 9.636000e-02   p_cons 4.750000e-03   p_joint 1.523000e-02

Joint ci ratio: 8.872381e-02	ci left: 1.666217e-02	ci right 1.821797e-02	k: 1917	n:110000
Cons ci ratio: 1.690630e-01	ci left: 4.452358e-03	ci right 5.283170e-03	k: 534	n:110000
KS ci ratio: 3.613111e-02	ci left: 9.491447e-02	ci right 9.841592e-02	k: 10632	n:110000
MSH5   110000 perm   38 sec   (2928 perm/sec)   p_kst 9.665455e-02   p_cons 4.854545e-03   p_joint 1.742727e-02

Joint ci ratio: 9.796652e-02	ci left: 1.252122e-02	ci right 1.381914e-02	k: 1579	n:120000
Cons ci ratio: 1.539338e-01	ci left: 4.961118e-03	ci right 5.796392e-03	k: 644	n:120000
KS ci ratio: 3.483048e-02	ci left: 9.380966e-02	ci right 9.714325e-02	k: 11456	n:120000
MSH5   120000 perm   41 sec   (2951 perm/sec)   p_kst 9.546667e-02   p_cons 5.366667e-03   p_joint 1.315833e-02

Joint ci ratio: 9.585957e-02	ci left: 1.209083e-02	ci right 1.331566e-02	k: 1650	n:130000
Cons ci ratio: 1.473394e-01	ci left: 5.016249e-03	ci right 5.821439e-03	k: 703	n:130000
KS ci ratio: 3.343391e-02	ci left: 9.402969e-02	ci right 9.723453e-02	k: 12431	n:130000
MSH5   130000 perm   44 sec   (2969 perm/sec)   p_kst 9.562308e-02   p_cons 5.407692e-03   p_joint 1.269231e-02

Joint ci ratio: 1.008741e-01	ci left: 1.013282e-02	ci right 1.121616e-02	k: 1493	n:140000
Cons ci ratio: 1.415258e-01	ci left: 5.064157e-03	ci right 5.842256e-03	k: 762	n:140000
KS ci ratio: 3.192627e-02	ci left: 9.566015e-02	ci right 9.877084e-02	k: 13609	n:140000
MSH5   140000 perm   47 sec   (2980 perm/sec)   p_kst 9.720714e-02   p_cons 5.442857e-03   p_joint 1.066429e-02

Joint ci ratio: 8.740004e-02	ci left: 1.265461e-02	ci right 1.381765e-02	k: 1984	n:150000
Cons ci ratio: 1.370222e-01	ci left: 5.054699e-03	ci right 5.804613e-03	k: 813	n:150000
KS ci ratio: 3.082515e-02	ci left: 9.581791e-02	ci right 9.882434e-02	k: 14597	n:150000
MSH5   150000 perm   50 sec   (2984 perm/sec)   p_kst 9.731333e-02   p_cons 5.420000e-03   p_joint 1.322667e-02

Joint ci ratio: 8.850374e-02	ci left: 1.157612e-02	ci right 1.265416e-02	k: 1937	n:160000
Cons ci ratio: 1.327686e-01	ci left: 5.058853e-03	ci right 5.784246e-03	k: 866	n:160000
KS ci ratio: 2.900178e-02	ci left: 1.009931e-01	ci right 1.039713e-01	k: 16396	n:160000
MSH5   160000 perm   54 sec   (2986 perm/sec)   p_kst 1.024750e-01   p_cons 5.412500e-03   p_joint 1.210625e-02

Joint ci ratio: 8.869784e-02	ci left: 1.085473e-02	ci right 1.186792e-02	k: 1930	n:170000
Cons ci ratio: 1.295266e-01	ci left: 5.011597e-03	ci right 5.711317e-03	k: 910	n:170000
KS ci ratio: 2.819071e-02	ci left: 1.006821e-01	ci right 1.035668e-01	k: 17360	n:170000
MSH5   170000 perm   57 sec   (2977 perm/sec)   p_kst 1.021176e-01   p_cons 5.352941e-03   p_joint 1.135294e-02

Joint ci ratio: 8.745317e-02	ci left: 1.055588e-02	ci right 1.152663e-02	k: 1986	n:180000
Cons ci ratio: 1.258502e-01	ci left: 5.023595e-03	ci right 5.703596e-03	k: 964	n:180000
KS ci ratio: 2.742407e-02	ci left: 1.005392e-01	ci right 1.033403e-01	k: 18348	n:180000
MSH5   180000 perm   61 sec   (2973 perm/sec)   p_kst 1.019333e-01   p_cons 5.355556e-03   p_joint 1.103333e-02

Joint ci ratio: 8.577203e-02	ci left: 1.040705e-02	ci right 1.134480e-02	k: 2065	n:190000
Cons ci ratio: 1.233865e-01	ci left: 4.958049e-03	ci right 5.615079e-03	k: 1003	n:190000
KS ci ratio: 2.674061e-02	ci left: 1.002502e-01	ci right 1.029725e-01	k: 19305	n:190000
MSH5   190000 perm   64 sec   (2967 perm/sec)   p_kst 1.016053e-01   p_cons 5.278947e-03   p_joint 1.086842e-02

Joint ci ratio: 8.498874e-02	ci left: 1.007746e-02	ci right 1.097681e-02	k: 2104	n:200000
Cons ci ratio: 1.207712e-01	ci left: 4.923423e-03	ci right 5.561046e-03	k: 1047	n:200000
KS ci ratio: 2.610007e-02	ci left: 1.000306e-01	ci right 1.026809e-01	k: 20270	n:200000
MSH5   200000 perm   68 sec   (2958 perm/sec)   p_kst 1.013500e-01   p_cons 5.235000e-03   p_joint 1.052000e-02

Joint ci ratio: 7.831307e-02	ci left: 1.132851e-02	ci right 1.225647e-02	k: 2475	n:210000
Cons ci ratio: 1.173472e-01	ci left: 4.975428e-03	ci right 5.600252e-03	k: 1109	n:210000
KS ci ratio: 2.546478e-02	ci left: 1.001073e-01	ci right 1.026941e-01	k: 21293	n:210000
MSH5   210000 perm   71 sec   (2948 perm/sec)   p_kst 1.013952e-01   p_cons 5.280952e-03   p_joint 1.178571e-02

Joint ci ratio: 7.429632e-02	ci left: 1.203098e-02	ci right 1.296375e-02	k: 2748	n:220000
Cons ci ratio: 1.149906e-01	ci left: 4.952284e-03	ci right 5.560863e-03	k: 1155	n:220000
KS ci ratio: 2.492222e-02	ci left: 9.982520e-02	ci right 1.023490e-01	k: 22238	n:220000
MSH5   220000 perm   75 sec   (2936 perm/sec)   p_kst 1.010818e-01   p_cons 5.250000e-03   p_joint 1.249091e-02

Joint ci ratio: 7.302372e-02	ci left: 1.192184e-02	ci right 1.282965e-02	k: 2845	n:230000
Cons ci ratio: 1.126762e-01	ci left: 4.939719e-03	ci right 5.533724e-03	k: 1203	n:230000
KS ci ratio: 2.437725e-02	ci left: 9.983193e-02	ci right 1.022999e-01	k: 23244	n:230000
MSH5   230000 perm   79 sec   (2918 perm/sec)   p_kst 1.010609e-01   p_cons 5.230435e-03   p_joint 1.236957e-02

Joint ci ratio: 6.472281e-02	ci left: 1.456668e-02	ci right 1.554508e-02	k: 3612	n:240000
Cons ci ratio: 1.098803e-01	ci left: 4.985047e-03	ci right 5.568665e-03	k: 1265	n:240000
KS ci ratio: 2.382557e-02	ci left: 1.001495e-01	ci right 1.025685e-01	k: 24325	n:240000
MSH5   240000 perm   83 sec   (2893 perm/sec)   p_kst 1.013542e-01   p_cons 5.270833e-03   p_joint 1.505000e-02

Joint ci ratio: 6.784897e-02	ci left: 1.272874e-02	ci right 1.362660e-02	k: 3293	n:250000
Cons ci ratio: 1.079383e-01	ci left: 4.964630e-03	ci right 5.534933e-03	k: 1311	n:250000
KS ci ratio: 2.337788e-02	ci left: 9.991296e-02	ci right 1.022803e-01	k: 25273	n:250000
MSH5   250000 perm   87 sec   (2858 perm/sec)   p_kst 1.010920e-01   p_cons 5.244000e-03   p_joint 1.317200e-02

Joint ci ratio: 5.636738e-02	ci left: 1.774653e-02	ci right 1.877963e-02	k: 4747	n:260000
Cons ci ratio: 1.059000e-01	ci left: 4.964591e-03	ci right 5.523448e-03	k: 1362	n:260000
KS ci ratio: 2.292097e-02	ci left: 9.995908e-02	ci right 1.022806e-01	k: 26290	n:260000
MSH5   260000 perm   92 sec   (2840 perm/sec)   p_kst 1.011154e-01   p_cons 5.238462e-03   p_joint 1.825769e-02

Joint ci ratio: 5.614653e-02	ci left: 1.723519e-02	ci right 1.823446e-02	k: 4787	n:270000
Cons ci ratio: 1.040840e-01	ci left: 4.953825e-03	ci right 5.501322e-03	k: 1410	n:270000
KS ci ratio: 2.250681e-02	ci left: 9.986584e-02	ci right 1.021427e-01	k: 27270	n:270000
MSH5   270000 perm   96 sec   (2820 perm/sec)   p_kst 1.010000e-01   p_cons 5.222222e-03   p_joint 1.772963e-02

Joint ci ratio: 5.713130e-02	ci left: 1.606307e-02	ci right 1.701126e-02	k: 4629	n:280000
Cons ci ratio: 1.017987e-01	ci left: 4.999595e-03	ci right 5.539294e-03	k: 1474	n:280000
KS ci ratio: 2.209388e-02	ci left: 9.994665e-02	ci right 1.021830e-01	k: 28297	n:280000
MSH5   280000 perm   100 sec   (2803 perm/sec)   p_kst 1.010607e-01   p_cons 5.264286e-03   p_joint 1.653214e-02

Joint ci ratio: 5.626518e-02	ci left: 1.599867e-02	ci right 1.692827e-02	k: 4773	n:290000
Cons ci ratio: 9.936596e-02	ci left: 5.072597e-03	ci right 5.606327e-03	k: 1547	n:290000
KS ci ratio: 2.170781e-02	ci left: 9.998106e-02	ci right 1.021786e-01	k: 29312	n:290000
MSH5   290000 perm   104 sec   (2785 perm/sec)   p_kst 1.010759e-01   p_cons 5.334483e-03   p_joint 1.645862e-02

Outputting figure to mutsig2_images.part000000000108/MSH5.5_2655_290000_0.10108_0.0053345_0.016459.png
                gene_name: MSH5
               theta_stop: 0.099 
                    nperm: 290000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.0053 
      ci_cons_bounds_left: 0.0051 
     ci_cons_bounds_right: 0.0056 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 21 percent done.
MS4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.762261e-02	ci left: 1.952523e-01	ci right 2.111210e-01	k: 2031	n:10000
Cons ci ratio: 4.502334e-02	ci left: 4.213649e-01	ci right 4.408752e-01	k: 4311	n:10000
KS ci ratio: 1.198041e-01	ci left: 9.087811e-02	ci right 1.025580e-01	k: 966	n:10000
MS4A1   10000 perm   2 sec   (5732 perm/sec)   p_kst 9.660000e-02   p_cons 4.311000e-01   p_joint 2.031000e-01

Joint ci ratio: 7.231397e-02	ci left: 1.234484e-01	ci right 1.327600e-01	k: 2561	n:20000
Cons ci ratio: 3.058580e-02	ci left: 4.439865e-01	ci right 4.578277e-01	k: 9018	n:20000
KS ci ratio: 8.331624e-02	ci left: 9.548311e-02	ci right 1.038337e-01	k: 1992	n:20000
MS4A1   20000 perm   4 sec   (5263 perm/sec)   p_kst 9.960000e-02   p_cons 4.509000e-01   p_joint 1.280500e-01

Outputting figure to mutsig2_images.part000000000108/MS4A1.4_918_20000_0.0996_0.4509_0.12805.png
                gene_name: MS4A1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.100 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 24 percent done.
MS4A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.414628e-02	ci left: 2.630978e-01	ci right 2.806353e-01	k: 2718	n:10000
Cons ci ratio: 5.825115e-02	ci left: 3.025284e-01	ci right 3.207814e-01	k: 3116	n:10000
KS ci ratio: 6.901795e-02	ci left: 2.354100e-01	ci right 2.523395e-01	k: 2438	n:10000
MS4A10   10000 perm   2 sec   (5729 perm/sec)   p_kst 2.438000e-01   p_cons 3.116000e-01   p_joint 2.718000e-01

Outputting figure to mutsig2_images.part000000000108/MS4A10.4_832_10000_0.2438_0.3116_0.2718.png
                gene_name: MS4A10
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 26 percent done.
MRPL37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.049155e-01	ci left: 3.167400e-02	ci right 3.899992e-02	k: 352	n:10000
Cons ci ratio: 1.296954e-01	ci left: 7.824692e-02	ci right 8.919702e-02	k: 836	n:10000
KS ci ratio: 1.900600e-01	ci left: 3.691153e-02	ci right 4.475883e-02	k: 407	n:10000
MRPL37   10000 perm   2 sec   (5855 perm/sec)   p_kst 4.070000e-02   p_cons 8.360000e-02   p_joint 3.520000e-02

Joint ci ratio: 1.414078e-01	ci left: 3.437815e-02	ci right 3.965756e-02	k: 739	n:20000
Cons ci ratio: 9.156119e-02	ci left: 8.009344e-02	ci right 8.782802e-02	k: 1678	n:20000
KS ci ratio: 1.279133e-01	ci left: 4.197441e-02	ci right 4.775885e-02	k: 896	n:20000
MRPL37   20000 perm   4 sec   (5159 perm/sec)   p_kst 4.480000e-02   p_cons 8.390000e-02   p_joint 3.695000e-02

Joint ci ratio: 1.048296e-01	ci left: 4.219418e-02	ci right 4.689454e-02	k: 1335	n:30000
Cons ci ratio: 7.343876e-02	ci left: 8.353924e-02	ci right 8.994106e-02	k: 2601	n:30000
KS ci ratio: 1.050768e-01	ci left: 4.199920e-02	ci right 4.668956e-02	k: 1329	n:30000
MRPL37   30000 perm   6 sec   (4900 perm/sec)   p_kst 4.430000e-02   p_cons 8.670000e-02   p_joint 4.450000e-02

Joint ci ratio: 9.536882e-02	ci left: 3.858909e-02	ci right 4.247797e-02	k: 1620	n:40000
Cons ci ratio: 6.414138e-02	ci left: 8.265422e-02	ci right 8.815615e-02	k: 3415	n:40000
KS ci ratio: 9.050223e-02	ci left: 4.276891e-02	ci right 4.684750e-02	k: 1791	n:40000
MRPL37   40000 perm   8 sec   (4767 perm/sec)   p_kst 4.477500e-02   p_cons 8.537500e-02   p_joint 4.050000e-02

Outputting figure to mutsig2_images.part000000000108/MRPL37.3_1300_40000_0.044775_0.085375_0.0405.png
                gene_name: MRPL37
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 29 percent done.
MRPL39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.157110e-02	ci left: 3.566483e-01	ci right 3.756298e-01	k: 3661	n:10000
Cons ci ratio: 2.260762e-02	ci left: 7.417955e-01	ci right 7.588585e-01	k: 7504	n:10000
KS ci ratio: 5.958053e-02	ci left: 2.930100e-01	ci right 3.111054e-01	k: 3020	n:10000
MRPL39   10000 perm   2 sec   (5739 perm/sec)   p_kst 3.020000e-01   p_cons 7.504000e-01   p_joint 3.661000e-01

Outputting figure to mutsig2_images.part000000000108/MRPL39.3_1150_10000_0.302_0.7504_0.3661.png
                gene_name: MRPL39
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 31 percent done.
MRPL47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.800080e-02	ci left: 3.903785e-01	ci right 4.096798e-01	k: 4000	n:10000
Cons ci ratio: 6.787716e-02	ci left: 2.415369e-01	ci right 2.586089e-01	k: 2500	n:10000
KS ci ratio: 4.838285e-02	ci left: 3.865951e-01	ci right 4.058654e-01	k: 3962	n:10000
MRPL47   10000 perm   2 sec   (5855 perm/sec)   p_kst 3.962000e-01   p_cons 2.500000e-01   p_joint 4.000000e-01

Outputting figure to mutsig2_images.part000000000108/MRPL47.3_781_10000_0.3962_0.25_0.4.png
                gene_name: MRPL47
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 33 percent done.
MRPS11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.996961e-01	ci left: 3.338573e-02	ci right 4.088702e-02	k: 370	n:10000
Cons ci ratio: 7.911566e-02	ci left: 1.892437e-01	ci right 2.049332e-01	k: 1970	n:10000
KS ci ratio: 2.839522e-01	ci left: 1.604286e-02	ci right 2.144267e-02	k: 186	n:10000
MRPS11   10000 perm   1 sec   (7103 perm/sec)   p_kst 1.860000e-02   p_cons 1.970000e-01   p_joint 3.700000e-02

Joint ci ratio: 1.568044e-01	ci left: 2.791979e-02	ci right 3.271805e-02	k: 605	n:20000
Cons ci ratio: 5.547115e-02	ci left: 1.942279e-01	ci right 2.053595e-01	k: 3995	n:20000
KS ci ratio: 1.973228e-01	ci left: 1.743844e-02	ci right 2.130309e-02	k: 386	n:20000
MRPS11   20000 perm   3 sec   (6049 perm/sec)   p_kst 1.930000e-02   p_cons 1.997500e-01   p_joint 3.025000e-02

Joint ci ratio: 1.273824e-01	ci left: 2.864765e-02	ci right 3.257728e-02	k: 917	n:30000
Cons ci ratio: 4.516042e-02	ci left: 1.961802e-01	ci right 2.052778e-01	k: 6021	n:30000
KS ci ratio: 1.632055e-01	ci left: 1.732516e-02	ci right 2.043567e-02	k: 565	n:30000
MRPS11   30000 perm   5 sec   (5796 perm/sec)   p_kst 1.883333e-02   p_cons 2.007000e-01   p_joint 3.056667e-02

Joint ci ratio: 1.047514e-01	ci left: 3.205045e-02	ci right 3.561765e-02	k: 1352	n:40000
Cons ci ratio: 3.908376e-02	ci left: 1.970076e-01	ci right 2.048859e-01	k: 8037	n:40000
KS ci ratio: 1.379925e-01	ci left: 1.840890e-02	ci right 2.116144e-02	k: 790	n:40000
MRPS11   40000 perm   7 sec   (5579 perm/sec)   p_kst 1.975000e-02   p_cons 2.009250e-01   p_joint 3.380000e-02

Joint ci ratio: 1.022412e-01	ci left: 2.709793e-02	ci right 3.003715e-02	k: 1427	n:50000
Cons ci ratio: 3.503291e-02	ci left: 1.967398e-01	ci right 2.037750e-01	k: 10012	n:50000
KS ci ratio: 1.225268e-01	ci left: 1.882959e-02	ci right 2.130657e-02	k: 1002	n:50000
MRPS11   50000 perm   9 sec   (5388 perm/sec)   p_kst 2.004000e-02   p_cons 2.002400e-01   p_joint 2.854000e-02

Joint ci ratio: 1.197936e-01	ci left: 1.648203e-02	ci right 1.859834e-02	k: 1051	n:60000
Cons ci ratio: 3.214387e-02	ci left: 1.954307e-01	ci right 2.018318e-01	k: 11917	n:60000
KS ci ratio: 1.106656e-01	ci left: 1.934864e-02	ci right 2.163141e-02	k: 1228	n:60000
MRPS11   60000 perm   11 sec   (5271 perm/sec)   p_kst 2.046667e-02   p_cons 1.986167e-01   p_joint 1.751667e-02

Joint ci ratio: 8.152620e-02	ci left: 3.066647e-02	ci right 3.328680e-02	k: 2237	n:70000
Cons ci ratio: 2.982416e-02	ci left: 1.949824e-01	ci right 2.008998e-01	k: 13855	n:70000
KS ci ratio: 1.016929e-01	ci left: 1.972767e-02	ci right 2.185517e-02	k: 1454	n:70000
MRPS11   70000 perm   14 sec   (5144 perm/sec)   p_kst 2.077143e-02   p_cons 1.979286e-01   p_joint 3.195714e-02

Joint ci ratio: 7.734064e-02	ci left: 2.990790e-02	ci right 3.232626e-02	k: 2488	n:80000
Cons ci ratio: 2.786005e-02	ci left: 1.956040e-01	ci right 2.011429e-01	k: 15869	n:80000
KS ci ratio: 9.523791e-02	ci left: 1.974896e-02	ci right 2.173600e-02	k: 1658	n:80000
MRPS11   80000 perm   16 sec   (4915 perm/sec)   p_kst 2.072500e-02   p_cons 1.983625e-01   p_joint 3.110000e-02

Outputting figure to mutsig2_images.part000000000108/MRPS11.3_609_80000_0.020725_0.19836_0.0311.png
                gene_name: MRPS11
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 36 percent done.
MRPS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.213117e-02	ci left: 3.516775e-01	ci right 3.706035e-01	k: 3611	n:10000
Cons ci ratio: 1.923880e-02	ci left: 7.980096e-01	ci right 8.136118e-01	k: 8059	n:10000
KS ci ratio: 9.032022e-02	ci left: 1.512941e-01	ci right 1.657054e-01	k: 1584	n:10000
MRPS5   10000 perm   2 sec   (6105 perm/sec)   p_kst 1.584000e-01   p_cons 8.059000e-01   p_joint 3.611000e-01

Outputting figure to mutsig2_images.part000000000108/MRPS5.3_1341_10000_0.1584_0.8059_0.3611.png
                gene_name: MRPS5
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 38 percent done.
MRVI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.113069e-02	ci left: 4.660698e-01	ci right 4.857443e-01	k: 4759	n:10000
Cons ci ratio: 9.159391e-02	ci left: 1.476637e-01	ci right 1.619380e-01	k: 1547	n:10000
KS ci ratio: 2.555722e-02	ci left: 6.926251e-01	ci right 7.106573e-01	k: 7017	n:10000
MRVI1   10000 perm   2 sec   (5491 perm/sec)   p_kst 7.017000e-01   p_cons 1.547000e-01   p_joint 4.759000e-01

Outputting figure to mutsig2_images.part000000000108/MRVI1.3_2792_10000_0.7017_0.1547_0.4759.png
                gene_name: MRVI1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 40 percent done.
MS4A15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.999502e-02	ci left: 1.264999e-01	ci right 1.399146e-01	k: 1331	n:10000
Cons ci ratio: 2.142107e-01	ci left: 2.892165e-02	ci right 3.595419e-02	k: 323	n:10000
KS ci ratio: 2.291532e-02	ci left: 7.366399e-01	ci right 7.538170e-01	k: 7453	n:10000
MS4A15   10000 perm   2 sec   (6407 perm/sec)   p_kst 7.453000e-01   p_cons 3.230000e-02   p_joint 1.331000e-01

Joint ci ratio: 7.955555e-02	ci left: 1.039271e-01	ci right 1.125872e-01	k: 2164	n:20000
Cons ci ratio: 1.493429e-01	ci left: 3.080828e-02	ci right 3.582860e-02	k: 665	n:20000
KS ci ratio: 1.628910e-02	ci left: 7.371861e-01	ci right 7.493431e-01	k: 14866	n:20000
MS4A15   20000 perm   4 sec   (5684 perm/sec)   p_kst 7.433000e-01   p_cons 3.325000e-02   p_joint 1.082000e-01

Joint ci ratio: 8.211420e-02	ci left: 6.769370e-02	ci right 7.352312e-02	k: 2117	n:30000
Cons ci ratio: 1.177366e-01	ci left: 3.353168e-02	ci right 3.775886e-02	k: 1068	n:30000
KS ci ratio: 1.315718e-02	ci left: 7.424427e-01	ci right 7.523093e-01	k: 22422	n:30000
MS4A15   30000 perm   6 sec   (5383 perm/sec)   p_kst 7.474000e-01   p_cons 3.560000e-02   p_joint 7.056667e-02

Joint ci ratio: 5.692788e-02	ci left: 1.029501e-01	ci right 1.090073e-01	k: 4238	n:40000
Cons ci ratio: 1.006287e-01	ci left: 3.470784e-02	ci right 3.840983e-02	k: 1461	n:40000
KS ci ratio: 1.138542e-02	ci left: 7.434132e-01	ci right 7.519508e-01	k: 29908	n:40000
MS4A15   40000 perm   8 sec   (5189 perm/sec)   p_kst 7.477000e-01   p_cons 3.652500e-02   p_joint 1.059500e-01

Joint ci ratio: 4.688898e-02	ci left: 1.197570e-01	ci right 1.255269e-01	k: 6131	n:50000
Cons ci ratio: 8.973804e-02	ci left: 3.510800e-02	ci right 3.842606e-02	k: 1837	n:50000
KS ci ratio: 1.021367e-02	ci left: 7.427432e-01	ci right 7.503882e-01	k: 37329	n:50000
MS4A15   50000 perm   10 sec   (5063 perm/sec)   p_kst 7.465800e-01   p_cons 3.674000e-02   p_joint 1.226200e-01

Outputting figure to mutsig2_images.part000000000108/MS4A15.3_747_50000_0.74658_0.03674_0.12262.png
                gene_name: MS4A15
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 43 percent done.
MS4A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.419492e-02	ci left: 2.628009e-01	ci right 2.803323e-01	k: 2715	n:10000
Cons ci ratio: 1.502819e-02	ci left: 8.651913e-01	ci right 8.783912e-01	k: 8719	n:10000
KS ci ratio: 1.138976e-01	ci left: 9.983694e-02	ci right 1.119937e-01	k: 1058	n:10000
MS4A2   10000 perm   2 sec   (5937 perm/sec)   p_kst 1.058000e-01   p_cons 8.719000e-01   p_joint 2.715000e-01

Joint ci ratio: 5.397284e-02	ci left: 2.030361e-01	ci right 2.143487e-01	k: 4173	n:20000
Cons ci ratio: 1.062319e-02	ci left: 8.672400e-01	ci right 8.765516e-01	k: 17439	n:20000
KS ci ratio: 8.090291e-02	ci left: 1.007841e-01	ci right 1.093311e-01	k: 2100	n:20000
MS4A2   20000 perm   4 sec   (5436 perm/sec)   p_kst 1.050000e-01   p_cons 8.719500e-01   p_joint 2.086500e-01

Outputting figure to mutsig2_images.part000000000108/MS4A2.3_814_20000_0.105_0.87195_0.20865.png
                gene_name: MS4A2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 45 percent done.
MS4A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.832145e-02	ci left: 6.476011e-01	ci right 6.663073e-01	k: 6570	n:10000
Cons ci ratio: 3.249880e-02	ci left: 5.828939e-01	ci right 6.022522e-01	k: 5926	n:10000
KS ci ratio: 2.301187e-02	ci left: 7.350228e-01	ci right 7.522350e-01	k: 7437	n:10000
MS4A7   10000 perm   2 sec   (6591 perm/sec)   p_kst 7.437000e-01   p_cons 5.926000e-01   p_joint 6.570000e-01

Outputting figure to mutsig2_images.part000000000108/MS4A7.3_747_10000_0.7437_0.5926_0.657.png
                gene_name: MS4A7
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 48 percent done.
MSC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.467656e-02	ci left: 8.705050e-01	ci right 8.834745e-01	k: 8771	n:10000
KS ci ratio: 3.790644e-02	ci left: 5.068520e-01	ci right 5.265383e-01	k: 5167	n:10000
MSC   10000 perm   2 sec   (6024 perm/sec)   p_kst 5.167000e-01   p_cons 8.771000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000108/MSC.3_629_10000_0.5167_0.8771_1.png
                gene_name: MSC
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
MSI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.922919e-02	ci left: 2.954883e-01	ci right 3.136257e-01	k: 3045	n:10000
KS ci ratio: 3.936692e-02	ci left: 4.879521e-01	ci right 5.076492e-01	k: 4978	n:10000
MSI2   10000 perm   2 sec   (6163 perm/sec)   p_kst 4.978000e-01   p_cons 3.045000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000108/MSI2.3_1134_10000_0.4978_0.3045_1.png
                gene_name: MSI2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
MRPL32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.392673e-01	ci left: 6.170319e-03	ci right 9.725324e-03	k: 78	n:10000
Cons ci ratio: 1.974952e-01	ci left: 3.414726e-02	ci right 4.172496e-02	k: 378	n:10000
KS ci ratio: 1.915330e-01	ci left: 3.633915e-02	ci right 4.413159e-02	k: 401	n:10000
MRPL32   10000 perm   1 sec   (6902 perm/sec)   p_kst 4.010000e-02   p_cons 3.780000e-02   p_joint 7.800000e-03

Joint ci ratio: 1.915958e-01	ci left: 1.853343e-02	ci right 2.250769e-02	k: 409	n:20000
Cons ci ratio: 1.357013e-01	ci left: 3.732625e-02	ci right 4.280850e-02	k: 800	n:20000
KS ci ratio: 1.387992e-01	ci left: 3.568248e-02	ci right 4.105279e-02	k: 766	n:20000
MRPL32   20000 perm   3 sec   (6246 perm/sec)   p_kst 3.830000e-02   p_cons 4.000000e-02   p_joint 2.045000e-02

Joint ci ratio: 1.050355e-01	ci left: 4.203170e-02	ci right 4.672372e-02	k: 1330	n:30000
Cons ci ratio: 1.102520e-01	ci left: 3.819990e-02	ci right 4.268966e-02	k: 1212	n:30000
KS ci ratio: 1.150836e-01	ci left: 3.508671e-02	ci right 3.940351e-02	k: 1116	n:30000
MRPL32   30000 perm   5 sec   (5973 perm/sec)   p_kst 3.720000e-02   p_cons 4.040000e-02   p_joint 4.433333e-02

Joint ci ratio: 8.223657e-02	ci left: 5.153535e-02	ci right 5.597971e-02	k: 2149	n:40000
Cons ci ratio: 9.524641e-02	ci left: 3.868680e-02	ci right 4.258024e-02	k: 1624	n:40000
KS ci ratio: 9.967726e-02	ci left: 3.536653e-02	ci right 3.910104e-02	k: 1488	n:40000
MRPL32   40000 perm   7 sec   (5780 perm/sec)   p_kst 3.720000e-02   p_cons 4.060000e-02   p_joint 5.372500e-02

Outputting figure to mutsig2_images.part000000000108/MRPL32.2_579_40000_0.0372_0.0406_0.053725.png
                gene_name: MRPL32
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 55 percent done.
MRPL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.388268e-03	ci left: 9.950195e-01	ci right 9.974774e-01	k: 9964	n:10000
Cons ci ratio: 5.305884e-02	ci left: 3.436272e-01	ci right 3.624585e-01	k: 3530	n:10000
KS ci ratio: 5.621107e-02	ci left: 3.179062e-01	ci right 3.363946e-01	k: 3271	n:10000
MRPL4   10000 perm   1 sec   (6778 perm/sec)   p_kst 3.271000e-01   p_cons 3.530000e-01   p_joint 9.964000e-01

Outputting figure to mutsig2_images.part000000000108/MRPL4.2_1025_10000_0.3271_0.353_0.9964.png
                gene_name: MRPL4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1.00 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1.00 

Current progress: 57 percent done.
MRPL45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.011016e-02	ci left: 9.327839e-01	ci right 9.423592e-01	k: 9377	n:10000
KS ci ratio: 1.025626e-02	ci left: 9.310246e-01	ci right 9.407196e-01	k: 9360	n:10000
MRPL45   10000 perm   1 sec   (6846 perm/sec)   p_kst 9.360000e-01   p_cons 9.377000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000108/MRPL45.2_953_10000_0.936_0.9377_1.png
                gene_name: MRPL45
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
MRPL46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.383558e-02	ci left: 1.718257e-01	ci right 1.869615e-01	k: 1793	n:10000
Cons ci ratio: 1.938045e-01	ci left: 3.548103e-02	ci right 4.319029e-02	k: 392	n:10000
KS ci ratio: 2.596680e-02	ci left: 6.858703e-01	ci right 7.040160e-01	k: 6950	n:10000
MRPL46   10000 perm   2 sec   (6539 perm/sec)   p_kst 6.950000e-01   p_cons 3.920000e-02   p_joint 1.793000e-01

Joint ci ratio: 1.113489e-01	ci left: 5.509208e-02	ci right 6.163705e-02	k: 1166	n:20000
Cons ci ratio: 1.343958e-01	ci left: 3.805187e-02	ci right 4.358264e-02	k: 815	n:20000
KS ci ratio: 1.832503e-02	ci left: 6.894211e-01	ci right 7.022220e-01	k: 13917	n:20000
MRPL46   20000 perm   3 sec   (5804 perm/sec)   p_kst 6.958500e-01   p_cons 4.075000e-02   p_joint 5.830000e-02

Joint ci ratio: 7.285774e-02	ci left: 8.478483e-02	ci right 9.122855e-02	k: 2639	n:30000
Cons ci ratio: 1.116012e-01	ci left: 3.729147e-02	ci right 4.173161e-02	k: 1184	n:30000
KS ci ratio: 1.507744e-02	ci left: 6.873435e-01	ci right 6.978191e-01	k: 20778	n:30000
MRPL46   30000 perm   5 sec   (5520 perm/sec)   p_kst 6.926000e-01   p_cons 3.946667e-02   p_joint 8.796667e-02

Joint ci ratio: 5.744459e-02	ci left: 1.012716e-01	ci right 1.072860e-01	k: 4170	n:40000
Cons ci ratio: 9.601890e-02	ci left: 3.807617e-02	ci right 4.194097e-02	k: 1599	n:40000
KS ci ratio: 1.305291e-02	ci left: 6.882024e-01	ci right 6.972696e-01	k: 27710	n:40000
MRPL46   40000 perm   7 sec   (5339 perm/sec)   p_kst 6.927500e-01   p_cons 3.997500e-02   p_joint 1.042500e-01

Outputting figure to mutsig2_images.part000000000108/MRPL46.2_856_40000_0.69275_0.039975_0.10425.png
                gene_name: MRPL46
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 62 percent done.
MRPL53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.793285e-01	ci left: 4.149837e-02	ci right 4.976893e-02	k: 455	n:10000
Cons ci ratio: 3.563971e-02	ci left: 5.375817e-01	ci right 5.571907e-01	k: 5474	n:10000
KS ci ratio: 4.479208e-01	ci left: 5.903663e-03	ci right 9.392367e-03	k: 75	n:10000
MRPL53   10000 perm   1 sec   (7025 perm/sec)   p_kst 7.500000e-03   p_cons 5.474000e-01   p_joint 4.550000e-02

Joint ci ratio: 1.343958e-01	ci left: 3.805187e-02	ci right 4.358264e-02	k: 815	n:20000
Cons ci ratio: 2.525872e-02	ci left: 5.393689e-01	ci right 5.532176e-01	k: 10926	n:20000
KS ci ratio: 3.254805e-01	ci left: 6.029406e-03	ci right 8.417230e-03	k: 143	n:20000
MRPL53   20000 perm   3 sec   (6136 perm/sec)   p_kst 7.150000e-03   p_cons 5.463000e-01   p_joint 4.075000e-02

Joint ci ratio: 1.091778e-01	ci left: 3.894635e-02	ci right 4.347638e-02	k: 1235	n:30000
Cons ci ratio: 2.076596e-02	ci left: 5.372423e-01	ci right 5.485493e-01	k: 16287	n:30000
KS ci ratio: 2.715128e-01	ci left: 5.963539e-03	ci right 7.867170e-03	k: 206	n:30000
MRPL53   30000 perm   5 sec   (5784 perm/sec)   p_kst 6.866667e-03   p_cons 5.429000e-01   p_joint 4.116667e-02

Joint ci ratio: 9.488183e-02	ci left: 3.897995e-02	ci right 4.288705e-02	k: 1636	n:40000
Cons ci ratio: 1.797589e-02	ci left: 5.382279e-01	ci right 5.480159e-01	k: 21725	n:40000
KS ci ratio: 2.386457e-01	ci left: 5.900505e-03	ci right 7.522355e-03	k: 267	n:40000
MRPL53   40000 perm   7 sec   (5469 perm/sec)   p_kst 6.675000e-03   p_cons 5.431250e-01   p_joint 4.090000e-02

Joint ci ratio: 8.495711e-02	ci left: 3.910230e-02	ci right 4.259126e-02	k: 2041	n:50000
Cons ci ratio: 1.607969e-02	ci left: 5.387013e-01	ci right 5.474537e-01	k: 27154	n:50000
KS ci ratio: 2.167325e-01	ci left: 5.795477e-03	ci right 7.222727e-03	k: 324	n:50000
MRPL53   50000 perm   9 sec   (5294 perm/sec)   p_kst 6.480000e-03   p_cons 5.430800e-01   p_joint 4.082000e-02

Joint ci ratio: 5.441758e-02	ci left: 7.742978e-02	ci right 8.177765e-02	k: 4775	n:60000
Cons ci ratio: 1.465254e-02	ci left: 5.399710e-01	ci right 5.479581e-01	k: 32638	n:60000
KS ci ratio: 1.958375e-01	ci left: 5.983579e-03	ci right 7.298158e-03	k: 397	n:60000
MRPL53   60000 perm   12 sec   (5186 perm/sec)   p_kst 6.616667e-03   p_cons 5.439667e-01   p_joint 7.958333e-02

Joint ci ratio: 5.021467e-02	ci left: 7.807117e-02	ci right 8.210658e-02	k: 5605	n:70000
Cons ci ratio: 1.358077e-02	ci left: 5.397154e-01	ci right 5.471096e-01	k: 38039	n:70000
KS ci ratio: 1.819691e-01	ci left: 5.986266e-03	ci right 7.198036e-03	k: 460	n:70000
MRPL53   70000 perm   14 sec   (5023 perm/sec)   p_kst 6.571429e-03   p_cons 5.434143e-01   p_joint 8.007143e-02

Joint ci ratio: 4.440239e-02	ci left: 8.680043e-02	ci right 9.075445e-02	k: 7101	n:80000
Cons ci ratio: 1.272326e-02	ci left: 5.391901e-01	ci right 5.461068e-01	k: 43412	n:80000
KS ci ratio: 1.693865e-01	ci left: 6.086524e-03	ci right 7.224697e-03	k: 531	n:80000
MRPL53   80000 perm   16 sec   (4877 perm/sec)   p_kst 6.637500e-03   p_cons 5.426500e-01   p_joint 8.876250e-02

Joint ci ratio: 4.413469e-02	ci left: 7.880751e-02	ci right 8.237513e-02	k: 7252	n:90000
Cons ci ratio: 1.199495e-02	ci left: 5.394162e-01	ci right 5.459366e-01	k: 48841	n:90000
KS ci ratio: 1.576569e-01	ci left: 6.284157e-03	ci right 7.370218e-03	k: 613	n:90000
MRPL53   90000 perm   19 sec   (4803 perm/sec)   p_kst 6.811111e-03   p_cons 5.426778e-01   p_joint 8.057778e-02

Joint ci ratio: 4.193183e-02	ci left: 7.868228e-02	ci right 8.206211e-02	k: 8036	n:100000
Cons ci ratio: 1.137892e-02	ci left: 5.396061e-01	ci right 5.457914e-01	k: 54270	n:100000
KS ci ratio: 1.523132e-01	ci left: 6.078629e-03	ci right 7.090310e-03	k: 657	n:100000
MRPL53   100000 perm   21 sec   (4725 perm/sec)   p_kst 6.570000e-03   p_cons 5.427000e-01   p_joint 8.036000e-02

Joint ci ratio: 4.830274e-02	ci left: 5.512477e-02	ci right 5.786231e-02	k: 6213	n:110000
Cons ci ratio: 1.083648e-02	ci left: 5.403416e-01	ci right 5.462379e-01	k: 59762	n:110000
KS ci ratio: 1.467428e-01	ci left: 5.972295e-03	ci right 6.926735e-03	k: 708	n:110000
MRPL53   110000 perm   24 sec   (4651 perm/sec)   p_kst 6.436364e-03   p_cons 5.432909e-01   p_joint 5.648182e-02

Joint ci ratio: 3.830949e-02	ci left: 7.871058e-02	ci right 8.179307e-02	k: 9629	n:120000
Cons ci ratio: 1.037165e-02	ci left: 5.406349e-01	ci right 5.462797e-01	k: 65215	n:120000
KS ci ratio: 1.391844e-01	ci left: 6.109430e-03	ci right 7.031326e-03	k: 787	n:120000
MRPL53   120000 perm   26 sec   (4578 perm/sec)   p_kst 6.558333e-03   p_cons 5.434583e-01   p_joint 8.024167e-02

Joint ci ratio: 3.681521e-02	ci left: 7.873673e-02	ci right 8.169741e-02	k: 10427	n:130000
Cons ci ratio: 9.950498e-03	ci left: 5.414571e-01	ci right 5.468794e-01	k: 70742	n:130000
KS ci ratio: 1.344126e-01	ci left: 6.062921e-03	ci right 6.943925e-03	k: 844	n:130000
MRPL53   130000 perm   29 sec   (4508 perm/sec)   p_kst 6.492308e-03   p_cons 5.441692e-01   p_joint 8.020769e-02

Joint ci ratio: 3.551930e-02	ci left: 7.861238e-02	ci right 8.146218e-02	k: 11204	n:140000
Cons ci ratio: 9.588366e-03	ci left: 5.415652e-01	ci right 5.467901e-01	k: 76185	n:140000
KS ci ratio: 1.298107e-01	ci left: 6.051168e-03	ci right 6.898039e-03	k: 905	n:140000
MRPL53   140000 perm   32 sec   (4439 perm/sec)   p_kst 6.464286e-03   p_cons 5.441786e-01   p_joint 8.002857e-02

Joint ci ratio: 3.186714e-02	ci left: 9.017126e-02	ci right 9.309788e-02	k: 13744	n:150000
Cons ci ratio: 9.261851e-03	ci left: 5.417288e-01	ci right 5.467762e-01	k: 81638	n:150000
KS ci ratio: 1.251960e-01	ci left: 6.086640e-03	ci right 6.905945e-03	k: 973	n:150000
MRPL53   150000 perm   34 sec   (4361 perm/sec)   p_kst 6.486667e-03   p_cons 5.442533e-01   p_joint 9.162667e-02

Joint ci ratio: 3.087185e-02	ci left: 9.012879e-02	ci right 9.296103e-02	k: 14646	n:160000
Cons ci ratio: 8.975161e-03	ci left: 5.413993e-01	ci right 5.462866e-01	k: 87015	n:160000
KS ci ratio: 1.206337e-01	ci left: 6.160578e-03	ci right 6.957460e-03	k: 1048	n:160000
MRPL53   160000 perm   37 sec   (4293 perm/sec)   p_kst 6.550000e-03   p_cons 5.438437e-01   p_joint 9.153750e-02

Joint ci ratio: 2.993363e-02	ci left: 9.026202e-02	ci right 9.301075e-02	k: 15577	n:170000
Cons ci ratio: 8.704757e-03	ci left: 5.416111e-01	ci right 5.463521e-01	k: 92477	n:170000
KS ci ratio: 1.172738e-01	ci left: 6.146336e-03	ci right 6.917697e-03	k: 1109	n:170000
MRPL53   170000 perm   40 sec   (4228 perm/sec)   p_kst 6.523529e-03   p_cons 5.439824e-01   p_joint 9.162941e-02

Joint ci ratio: 2.905474e-02	ci left: 9.050302e-02	ci right 9.317681e-02	k: 16530	n:180000
Cons ci ratio: 8.457501e-03	ci left: 5.417957e-01	ci right 5.464029e-01	k: 97938	n:180000
KS ci ratio: 1.138865e-01	ci left: 6.166338e-03	ci right 6.916354e-03	k: 1176	n:180000
MRPL53   180000 perm   43 sec   (4164 perm/sec)   p_kst 6.533333e-03   p_cons 5.441000e-01   p_joint 9.183333e-02

Joint ci ratio: 2.828283e-02	ci left: 9.052097e-02	ci right 9.312308e-02	k: 17445	n:190000
Cons ci ratio: 8.229834e-03	ci left: 5.419836e-01	ci right 5.464677e-01	k: 103403	n:190000
KS ci ratio: 1.105978e-01	ci left: 6.204995e-03	ci right 6.936498e-03	k: 1247	n:190000
MRPL53   190000 perm   46 sec   (4102 perm/sec)   p_kst 6.563158e-03   p_cons 5.442263e-01   p_joint 9.181579e-02

Joint ci ratio: 2.754129e-02	ci left: 9.070692e-02	ci right 9.324492e-02	k: 18394	n:200000
Cons ci ratio: 8.019777e-03	ci left: 5.421442e-01	ci right 5.465145e-01	k: 108866	n:200000
KS ci ratio: 1.072516e-01	ci left: 6.278997e-03	ci right 6.995415e-03	k: 1326	n:200000
MRPL53   200000 perm   49 sec   (4044 perm/sec)   p_kst 6.630000e-03   p_cons 5.443300e-01   p_joint 9.197000e-02

Joint ci ratio: 2.684904e-02	ci left: 9.091382e-02	ci right 9.339269e-02	k: 19351	n:210000
Cons ci ratio: 7.824723e-03	ci left: 5.423098e-01	ci right 5.465746e-01	k: 114333	n:210000
KS ci ratio: 1.044915e-01	ci left: 6.309145e-03	ci right 7.009339e-03	k: 1397	n:210000
MRPL53   210000 perm   53 sec   (3987 perm/sec)   p_kst 6.652381e-03   p_cons 5.444429e-01   p_joint 9.214762e-02

Joint ci ratio: 2.619797e-02	ci left: 9.115686e-02	ci right 9.358117e-02	k: 20320	n:220000
Cons ci ratio: 7.647234e-03	ci left: 5.422024e-01	ci right 5.463692e-01	k: 119743	n:220000
KS ci ratio: 1.022851e-01	ci left: 6.292466e-03	ci right 6.975176e-03	k: 1458	n:220000
MRPL53   220000 perm   56 sec   (3929 perm/sec)   p_kst 6.627273e-03   p_cons 5.442864e-01   p_joint 9.236364e-02

Joint ci ratio: 2.561261e-02	ci left: 9.124541e-02	ci right 9.361705e-02	k: 21258	n:230000
Cons ci ratio: 7.476449e-03	ci left: 5.424272e-01	ci right 5.465021e-01	k: 125227	n:230000
KS ci ratio: 1.000474e-01	ci left: 6.298577e-03	ci right 6.966121e-03	k: 1524	n:230000
MRPL53   230000 perm   59 sec   (3875 perm/sec)   p_kst 6.626087e-03   p_cons 5.444652e-01   p_joint 9.242609e-02

Joint ci ratio: 2.508973e-02	ci left: 9.116140e-02	ci right 9.348179e-02	k: 22156	n:240000
Cons ci ratio: 7.324055e-03	ci left: 5.421298e-01	ci right 5.461191e-01	k: 130590	n:240000
KS ci ratio: 9.785747e-02	ci left: 6.316524e-03	ci right 6.970476e-03	k: 1593	n:240000
MRPL53   240000 perm   63 sec   (3824 perm/sec)   p_kst 6.637500e-03   p_cons 5.441250e-01   p_joint 9.231667e-02

Outputting figure to mutsig2_images.part000000000108/MRPL53.2_351_240000_0.0066375_0.54412_0.092317.png
                gene_name: MRPL53
               theta_stop: 0.098 
                    nperm: 240000 
                     p_ks: 0.0066 
        ci_ks_bounds_left: 0.0063 
       ci_ks_bounds_right: 0.0070 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.093 

Current progress: 64 percent done.
MRPL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.569972e-02	ci left: 4.140880e-01	ci right 4.335564e-01	k: 4238	n:10000
Cons ci ratio: 1.133596e-01	ci left: 1.007141e-01	ci right 1.129160e-01	k: 1067	n:10000
KS ci ratio: 1.432748e-02	ci left: 8.757201e-01	ci right 8.884564e-01	k: 8822	n:10000
MRPL9   10000 perm   1 sec   (6767 perm/sec)   p_kst 8.822000e-01   p_cons 1.067000e-01   p_joint 4.238000e-01

Joint ci ratio: 3.652906e-02	ci left: 3.586715e-01	ci right 3.720677e-01	k: 7307	n:20000
Cons ci ratio: 8.240086e-02	ci left: 9.744601e-02	ci right 1.058702e-01	k: 2032	n:20000
KS ci ratio: 1.016889e-02	ci left: 8.768386e-01	ci right 8.858502e-01	k: 17628	n:20000
MRPL9   20000 perm   3 sec   (5920 perm/sec)   p_kst 8.814000e-01   p_cons 1.016000e-01   p_joint 3.653500e-01

Outputting figure to mutsig2_images.part000000000108/MRPL9.2_832_20000_0.8814_0.1016_0.36535.png
                gene_name: MRPL9
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 67 percent done.
MRPS18C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.268642e-02	ci left: 1.758581e-01	ci right 1.911268e-01	k: 1834	n:10000
Cons ci ratio: 5.329191e-02	ci left: 3.416399e-01	ci right 3.604469e-01	k: 3510	n:10000
KS ci ratio: 7.747908e-02	ci left: 1.958434e-01	ci right 2.117295e-01	k: 2037	n:10000
MRPS18C   10000 perm   2 sec   (5900 perm/sec)   p_kst 2.037000e-01   p_cons 3.510000e-01   p_joint 1.834000e-01

Outputting figure to mutsig2_images.part000000000108/MRPS18C.2_453_10000_0.2037_0.351_0.1834.png
                gene_name: MRPS18C
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 69 percent done.
MRPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.616784e-02	ci left: 5.302713e-01	ci right 5.499054e-01	k: 5401	n:10000
Cons ci ratio: 1.610905e-01	ci left: 5.138109e-02	ci right 6.047977e-02	k: 558	n:10000
KS ci ratio: 5.276977e-02	ci left: 3.461116e-01	ci right 3.649727e-01	k: 3555	n:10000
MRPS2   10000 perm   2 sec   (6582 perm/sec)   p_kst 3.555000e-01   p_cons 5.580000e-02   p_joint 5.401000e-01

Joint ci ratio: 1.357096e-02	ci left: 8.011073e-01	ci right 8.121034e-01	k: 16133	n:20000
Cons ci ratio: 1.130035e-01	ci left: 5.353447e-02	ci right 5.999515e-02	k: 1134	n:20000
KS ci ratio: 3.667918e-02	ci left: 3.567791e-01	ci right 3.701606e-01	k: 7269	n:20000
MRPS2   20000 perm   3 sec   (5967 perm/sec)   p_kst 3.634500e-01   p_cons 5.670000e-02   p_joint 8.066500e-01

Joint ci ratio: 3.539799e-02	ci left: 2.850018e-01	ci right 2.953056e-01	k: 8704	n:30000
Cons ci ratio: 9.193893e-02	ci left: 5.450066e-02	ci right 5.978551e-02	k: 1713	n:30000
KS ci ratio: 2.985155e-02	ci left: 3.595156e-01	ci right 3.704439e-01	k: 10949	n:30000
MRPS2   30000 perm   5 sec   (5671 perm/sec)   p_kst 3.649667e-01   p_cons 5.710000e-02   p_joint 2.901333e-01

Outputting figure to mutsig2_images.part000000000108/MRPS2.2_907_30000_0.36497_0.0571_0.29013.png
                gene_name: MRPS2
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 71 percent done.
MRPS22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.996744e-02	ci left: 7.859382e-01	ci right 8.018902e-01	k: 7940	n:10000
KS ci ratio: 6.966016e-02	ci left: 2.320511e-01	ci right 2.489003e-01	k: 2404	n:10000
MRPS22   10000 perm   2 sec   (6489 perm/sec)   p_kst 2.404000e-01   p_cons 7.940000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000108/MRPS22.2_1115_10000_0.2404_0.794_1.png
                gene_name: MRPS22
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
MRPS24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.576490e-02	ci left: 6.891970e-01	ci right 7.072873e-01	k: 6983	n:10000
Cons ci ratio: 1.794294e-02	ci left: 8.192382e-01	ci right 8.341709e-01	k: 8268	n:10000
KS ci ratio: 2.790168e-02	ci left: 6.543436e-01	ci right 6.729609e-01	k: 6637	n:10000
MRPS24   10000 perm   1 sec   (6985 perm/sec)   p_kst 6.637000e-01   p_cons 8.268000e-01   p_joint 6.983000e-01

Outputting figure to mutsig2_images.part000000000108/MRPS24.2_520_10000_0.6637_0.8268_0.6983.png
                gene_name: MRPS24
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 76 percent done.
MRPS27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.323371e-02	ci left: 2.144784e-01	ci right 2.308835e-01	k: 2226	n:10000
Cons ci ratio: 1.071676e-01	ci left: 1.116413e-01	ci right 1.243822e-01	k: 1179	n:10000
KS ci ratio: 3.113034e-02	ci left: 6.035728e-01	ci right 6.227612e-01	k: 6132	n:10000
MRPS27   10000 perm   2 sec   (6104 perm/sec)   p_kst 6.132000e-01   p_cons 1.179000e-01   p_joint 2.226000e-01

Joint ci ratio: 2.606667e-02	ci left: 5.237045e-01	ci right 5.375866e-01	k: 10613	n:20000
Cons ci ratio: 7.693061e-02	ci left: 1.104624e-01	ci right 1.193499e-01	k: 2297	n:20000
KS ci ratio: 2.242639e-02	ci left: 5.975333e-01	ci right 6.111364e-01	k: 12087	n:20000
MRPS27   20000 perm   4 sec   (5340 perm/sec)   p_kst 6.043500e-01   p_cons 1.148500e-01   p_joint 5.306500e-01

Outputting figure to mutsig2_images.part000000000108/MRPS27.2_1289_20000_0.60435_0.11485_0.53065.png
                gene_name: MRPS27
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 79 percent done.
MRPS30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.142247e-02	ci left: 9.163640e-01	ci right 9.269888e-01	k: 9218	n:10000
Cons ci ratio: 1.891855e-02	ci left: 8.032880e-01	ci right 8.187304e-01	k: 8111	n:10000
KS ci ratio: 3.950888e-02	ci left: 4.861529e-01	ci right 5.058495e-01	k: 4960	n:10000
MRPS30   10000 perm   2 sec   (5831 perm/sec)   p_kst 4.960000e-01   p_cons 8.111000e-01   p_joint 9.218000e-01

Outputting figure to mutsig2_images.part000000000108/MRPS30.2_1340_10000_0.496_0.8111_0.9218.png
                gene_name: MRPS30
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 81 percent done.
MRPS31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.475779e-01	ci left: 6.101761e-02	ci right 7.083710e-02	k: 658	n:10000
Cons ci ratio: 7.342460e-02	ci left: 2.135905e-01	ci right 2.299719e-01	k: 2217	n:10000
KS ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
MRPS31   10000 perm   2 sec   (6209 perm/sec)   p_kst 2.100000e-03   p_cons 2.217000e-01   p_joint 6.580000e-02

Joint ci ratio: 5.772931e-01	ci left: 1.641624e-03	ci right 3.009532e-03	k: 45	n:20000
Cons ci ratio: 5.160577e-02	ci left: 2.180887e-01	ci right 2.296917e-01	k: 4477	n:20000
KS ci ratio: 6.352878e-01	ci left: 1.302895e-03	ci right 2.549089e-03	k: 37	n:20000
MRPS31   20000 perm   4 sec   (5122 perm/sec)   p_kst 1.850000e-03   p_cons 2.238500e-01   p_joint 2.250000e-03

Joint ci ratio: 5.973559e-01	ci left: 1.009177e-03	ci right 1.891927e-03	k: 42	n:30000
Cons ci ratio: 4.307932e-02	ci left: 2.116189e-01	ci right 2.209694e-01	k: 6488	n:30000
KS ci ratio: 5.142149e-01	ci left: 1.439349e-03	ci right 2.460979e-03	k: 57	n:30000
MRPS31   30000 perm   6 sec   (5001 perm/sec)   p_kst 1.900000e-03   p_cons 2.162667e-01   p_joint 1.400000e-03

Joint ci ratio: 5.596499e-01	ci left: 8.849137e-04	ci right 1.590715e-03	k: 48	n:40000
Cons ci ratio: 3.732437e-02	ci left: 2.120996e-01	ci right 2.201916e-01	k: 8645	n:40000
KS ci ratio: 4.583767e-01	ci left: 1.408647e-03	ci right 2.266273e-03	k: 72	n:40000
MRPS31   40000 perm   8 sec   (4920 perm/sec)   p_kst 1.800000e-03   p_cons 2.161250e-01   p_joint 1.200000e-03

Joint ci ratio: 4.223366e-01	ci left: 1.358118e-03	ci right 2.101654e-03	k: 85	n:50000
Cons ci ratio: 3.262167e-02	ci left: 2.204113e-01	ci right 2.277407e-01	k: 11203	n:50000
KS ci ratio: 4.083080e-01	ci left: 1.465596e-03	ci right 2.234093e-03	k: 91	n:50000
MRPS31   50000 perm   10 sec   (4821 perm/sec)   p_kst 1.820000e-03   p_cons 2.240600e-01   p_joint 1.700000e-03

Joint ci ratio: 1.778310e-01	ci left: 7.318665e-03	ci right 8.762863e-03	k: 481	n:60000
Cons ci ratio: 2.976342e-02	ci left: 2.209177e-01	ci right 2.276090e-01	k: 13455	n:60000
KS ci ratio: 3.822148e-01	ci left: 1.416472e-03	ci right 2.099838e-03	k: 104	n:60000
MRPS31   60000 perm   13 sec   (4522 perm/sec)   p_kst 1.733333e-03   p_cons 2.242500e-01   p_joint 8.016667e-03

Joint ci ratio: 2.656923e-01	ci left: 2.688417e-03	ci right 3.525041e-03	k: 216	n:70000
Cons ci ratio: 2.750552e-02	ci left: 2.217971e-01	ci right 2.279971e-01	k: 15742	n:70000
KS ci ratio: 3.684622e-01	ci left: 1.317612e-03	ci right 1.924903e-03	k: 112	n:70000
MRPS31   70000 perm   16 sec   (4437 perm/sec)   p_kst 1.600000e-03   p_cons 2.248857e-01   p_joint 3.085714e-03

Joint ci ratio: 2.968492e-01	ci left: 1.852532e-03	ci right 2.509407e-03	k: 173	n:80000
Cons ci ratio: 2.570787e-02	ci left: 2.222843e-01	ci right 2.280856e-01	k: 18014	n:80000
KS ci ratio: 3.409085e-01	ci left: 1.369286e-03	ci right 1.942828e-03	k: 131	n:80000
MRPS31   80000 perm   18 sec   (4393 perm/sec)   p_kst 1.637500e-03   p_cons 2.251750e-01   p_joint 2.162500e-03

Joint ci ratio: 3.208712e-01	ci left: 1.390356e-03	ci right 1.931467e-03	k: 148	n:90000
Cons ci ratio: 2.425142e-02	ci left: 2.222531e-01	ci right 2.277202e-01	k: 20248	n:90000
KS ci ratio: 3.230502e-01	ci left: 1.369927e-03	ci right 1.907459e-03	k: 146	n:90000
MRPS31   90000 perm   21 sec   (4339 perm/sec)   p_kst 1.622222e-03   p_cons 2.249778e-01   p_joint 1.644444e-03

Joint ci ratio: 2.952195e-01	ci left: 1.500499e-03	ci right 2.029073e-03	k: 175	n:100000
Cons ci ratio: 2.302071e-02	ci left: 2.221858e-01	ci right 2.273702e-01	k: 22477	n:100000
KS ci ratio: 3.012821e-01	ci left: 1.435728e-03	ci right 1.953863e-03	k: 168	n:100000
MRPS31   100000 perm   23 sec   (4286 perm/sec)   p_kst 1.680000e-03   p_cons 2.247700e-01   p_joint 1.750000e-03

Joint ci ratio: 2.783302e-01	ci left: 1.549722e-03	ci right 2.058939e-03	k: 197	n:110000
Cons ci ratio: 2.199576e-02	ci left: 2.215752e-01	ci right 2.265121e-01	k: 24644	n:110000
KS ci ratio: 2.841397e-01	ci left: 1.482116e-03	ci right 1.981108e-03	k: 189	n:110000
MRPS31   110000 perm   26 sec   (4247 perm/sec)   p_kst 1.718182e-03   p_cons 2.240364e-01   p_joint 1.790909e-03

Joint ci ratio: 3.068282e-01	ci left: 1.150227e-03	ci right 1.574460e-03	k: 162	n:120000
Cons ci ratio: 2.103839e-02	ci left: 2.220255e-01	ci right 2.267545e-01	k: 26926	n:120000
KS ci ratio: 2.748961e-01	ci left: 1.459346e-03	ci right 1.931926e-03	k: 202	n:120000
MRPS31   120000 perm   29 sec   (4199 perm/sec)   p_kst 1.683333e-03   p_cons 2.243833e-01   p_joint 1.350000e-03

Joint ci ratio: 3.126599e-01	ci left: 1.019169e-03	ci right 1.403636e-03	k: 156	n:130000
Cons ci ratio: 2.020095e-02	ci left: 2.223261e-01	ci right 2.268708e-01	k: 29197	n:130000
KS ci ratio: 2.677440e-01	ci left: 1.425945e-03	ci right 1.873679e-03	k: 213	n:130000
MRPS31   130000 perm   31 sec   (4154 perm/sec)   p_kst 1.638462e-03   p_cons 2.245923e-01   p_joint 1.200000e-03

Joint ci ratio: 2.978468e-01	ci left: 1.051912e-03	ci right 1.426380e-03	k: 172	n:140000
Cons ci ratio: 1.944140e-02	ci left: 2.228503e-01	ci right 2.272325e-01	k: 31505	n:140000
KS ci ratio: 2.549542e-01	ci left: 1.470950e-03	ci right 1.907247e-03	k: 235	n:140000
MRPS31   140000 perm   34 sec   (4108 perm/sec)   p_kst 1.678571e-03   p_cons 2.250357e-01   p_joint 1.228571e-03

Joint ci ratio: 2.920032e-01	ci left: 1.024997e-03	ci right 1.381401e-03	k: 179	n:150000
Cons ci ratio: 1.880426e-02	ci left: 2.225167e-01	ci right 2.267473e-01	k: 33694	n:150000
KS ci ratio: 2.492174e-01	ci left: 1.441585e-03	ci right 1.858058e-03	k: 246	n:150000
MRPS31   150000 perm   37 sec   (4056 perm/sec)   p_kst 1.640000e-03   p_cons 2.246267e-01   p_joint 1.193333e-03

Joint ci ratio: 2.827310e-01	ci left: 1.030531e-03	ci right 1.375453e-03	k: 191	n:160000
Cons ci ratio: 1.822590e-02	ci left: 2.222269e-01	ci right 2.263206e-01	k: 35883	n:160000
KS ci ratio: 2.410595e-01	ci left: 1.451212e-03	ci right 1.854691e-03	k: 263	n:160000
MRPS31   160000 perm   40 sec   (4002 perm/sec)   p_kst 1.643750e-03   p_cons 2.242687e-01   p_joint 1.193750e-03

Joint ci ratio: 2.756455e-01	ci left: 1.024617e-03	ci right 1.357475e-03	k: 201	n:170000
Cons ci ratio: 1.768643e-02	ci left: 2.221958e-01	ci right 2.261665e-01	k: 38110	n:170000
KS ci ratio: 2.357640e-01	ci left: 1.432217e-03	ci right 1.820391e-03	k: 275	n:170000
MRPS31   170000 perm   43 sec   (3950 perm/sec)   p_kst 1.617647e-03   p_cons 2.241765e-01   p_joint 1.182353e-03

Joint ci ratio: 2.697050e-01	ci left: 1.014275e-03	ci right 1.335471e-03	k: 210	n:180000
Cons ci ratio: 1.719769e-02	ci left: 2.220590e-01	ci right 2.259165e-01	k: 40317	n:180000
KS ci ratio: 2.320162e-01	ci left: 1.399716e-03	ci right 1.772187e-03	k: 284	n:180000
MRPS31   180000 perm   46 sec   (3889 perm/sec)   p_kst 1.577778e-03   p_cons 2.239833e-01   p_joint 1.166667e-03

Joint ci ratio: 2.953435e-01	ci left: 7.896912e-04	ci right 1.068004e-03	k: 175	n:190000
Cons ci ratio: 1.672707e-02	ci left: 2.223578e-01	ci right 2.261138e-01	k: 42604	n:190000
KS ci ratio: 2.257654e-01	ci left: 1.405430e-03	ci right 1.767944e-03	k: 300	n:190000
MRPS31   190000 perm   50 sec   (3838 perm/sec)   p_kst 1.578947e-03   p_cons 2.242316e-01   p_joint 9.210526e-04

Joint ci ratio: 2.896414e-01	ci left: 7.826387e-04	ci right 1.052165e-03	k: 182	n:200000
Cons ci ratio: 1.629144e-02	ci left: 2.226629e-01	ci right 2.263251e-01	k: 44898	n:200000
KS ci ratio: 2.206924e-01	ci left: 1.401245e-03	ci right 1.753455e-03	k: 314	n:200000
MRPS31   200000 perm   53 sec   (3785 perm/sec)   p_kst 1.570000e-03   p_cons 2.244900e-01   p_joint 9.100000e-04

Joint ci ratio: 2.850090e-01	ci left: 7.718822e-04	ci right 1.032688e-03	k: 188	n:210000
Cons ci ratio: 1.590229e-02	ci left: 2.226314e-01	ci right 2.262048e-01	k: 47127	n:210000
KS ci ratio: 2.166071e-01	ci left: 1.388531e-03	ci right 1.730226e-03	k: 326	n:210000
MRPS31   210000 perm   56 sec   (3737 perm/sec)   p_kst 1.552381e-03   p_cons 2.244143e-01   p_joint 8.952381e-04

Joint ci ratio: 2.880823e-01	ci left: 7.199185e-04	ci right 9.662670e-04	k: 184	n:220000
Cons ci ratio: 1.552739e-02	ci left: 2.228802e-01	ci right 2.263725e-01	k: 49417	n:220000
KS ci ratio: 2.111865e-01	ci left: 1.398551e-03	ci right 1.732984e-03	k: 343	n:220000
MRPS31   220000 perm   60 sec   (3682 perm/sec)   p_kst 1.559091e-03   p_cons 2.246227e-01   p_joint 8.363636e-04

Joint ci ratio: 2.703816e-01	ci left: 7.897142e-04	ci right 1.040529e-03	k: 209	n:230000
Cons ci ratio: 1.517742e-02	ci left: 2.231169e-01	ci right 2.265335e-01	k: 51709	n:230000
KS ci ratio: 2.058680e-01	ci left: 1.411920e-03	ci right 1.739977e-03	k: 361	n:230000
MRPS31   230000 perm   63 sec   (3629 perm/sec)   p_kst 1.569565e-03   p_cons 2.248217e-01   p_joint 9.086957e-04

Joint ci ratio: 2.635658e-01	ci left: 7.995763e-04	ci right 1.046067e-03	k: 220	n:240000
Cons ci ratio: 1.486395e-02	ci left: 2.230106e-01	ci right 2.263544e-01	k: 53923	n:240000
KS ci ratio: 2.009321e-01	ci left: 1.424272e-03	ci right 1.746291e-03	k: 379	n:240000
MRPS31   240000 perm   67 sec   (3587 perm/sec)   p_kst 1.579167e-03   p_cons 2.246792e-01   p_joint 9.166667e-04

Joint ci ratio: 2.600609e-01	ci left: 7.900177e-04	ci right 1.029796e-03	k: 226	n:250000
Cons ci ratio: 1.456261e-02	ci left: 2.230691e-01	ci right 2.263453e-01	k: 56176	n:250000
KS ci ratio: 1.983416e-01	ci left: 1.405300e-03	ci right 1.718438e-03	k: 389	n:250000
MRPS31   250000 perm   70 sec   (3546 perm/sec)   p_kst 1.556000e-03   p_cons 2.247040e-01   p_joint 9.040000e-04

Joint ci ratio: 2.555965e-01	ci left: 7.884133e-04	ci right 1.022942e-03	k: 234	n:260000
Cons ci ratio: 1.427730e-02	ci left: 2.231620e-01	ci right 2.263749e-01	k: 58439	n:260000
KS ci ratio: 1.968370e-01	ci left: 1.373183e-03	ci right 1.676565e-03	k: 395	n:260000
MRPS31   260000 perm   74 sec   (3505 perm/sec)   p_kst 1.519231e-03   p_cons 2.247654e-01   p_joint 9.000000e-04

Joint ci ratio: 2.493091e-01	ci left: 8.008464e-04	ci right 1.032305e-03	k: 246	n:270000
Cons ci ratio: 1.400620e-02	ci left: 2.232967e-01	ci right 2.264499e-01	k: 60715	n:270000
KS ci ratio: 1.925094e-01	ci left: 1.385743e-03	ci right 1.684380e-03	k: 413	n:270000
MRPS31   270000 perm   78 sec   (3465 perm/sec)   p_kst 1.529630e-03   p_cons 2.248704e-01   p_joint 9.111111e-04

Joint ci ratio: 2.529260e-01	ci left: 7.488153e-04	ci right 9.688706e-04	k: 239	n:280000
Cons ci ratio: 1.375631e-02	ci left: 2.232620e-01	ci right 2.263580e-01	k: 62946	n:280000
KS ci ratio: 1.878032e-01	ci left: 1.407683e-03	ci right 1.702788e-03	k: 434	n:280000
MRPS31   280000 perm   82 sec   (3424 perm/sec)   p_kst 1.550000e-03   p_cons 2.248071e-01   p_joint 8.535714e-04

Joint ci ratio: 2.493170e-01	ci left: 7.456129e-04	ci right 9.611154e-04	k: 246	n:290000
Cons ci ratio: 1.351493e-02	ci left: 2.233436e-01	ci right 2.263860e-01	k: 65210	n:290000
KS ci ratio: 1.848527e-01	ci left: 1.405167e-03	ci right 1.694596e-03	k: 448	n:290000
MRPS31   290000 perm   86 sec   (3385 perm/sec)   p_kst 1.544828e-03   p_cons 2.248621e-01   p_joint 8.482759e-04

Joint ci ratio: 2.458581e-01	ci left: 7.426447e-04	ci right 9.538565e-04	k: 253	n:300000
Cons ci ratio: 1.329205e-02	ci left: 2.232573e-01	ci right 2.262480e-01	k: 67425	n:300000
KS ci ratio: 1.824320e-01	ci left: 1.396488e-03	ci right 1.679947e-03	k: 460	n:300000
MRPS31   300000 perm   90 sec   (3347 perm/sec)   p_kst 1.533333e-03   p_cons 2.247500e-01   p_joint 8.433333e-04

Joint ci ratio: 2.439466e-01	ci left: 7.307992e-04	ci right 9.367813e-04	k: 257	n:310000
Cons ci ratio: 1.307609e-02	ci left: 2.232767e-01	ci right 2.262187e-01	k: 69671	n:310000
KS ci ratio: 1.804865e-01	ci left: 1.382232e-03	ci right 1.659479e-03	k: 470	n:310000
MRPS31   310000 perm   94 sec   (3309 perm/sec)   p_kst 1.516129e-03   p_cons 2.247452e-01   p_joint 8.290323e-04

Joint ci ratio: 2.416178e-01	ci left: 7.226359e-04	ci right 9.240812e-04	k: 262	n:320000
Cons ci ratio: 1.287310e-02	ci left: 2.232205e-01	ci right 2.261157e-01	k: 71893	n:320000
KS ci ratio: 1.780467e-01	ci left: 1.377839e-03	ci right 1.650066e-03	k: 483	n:320000
MRPS31   320000 perm   98 sec   (3270 perm/sec)   p_kst 1.509375e-03   p_cons 2.246656e-01   p_joint 8.187500e-04

Joint ci ratio: 2.375866e-01	ci left: 7.263735e-04	ci right 9.249854e-04	k: 271	n:330000
Cons ci ratio: 1.267475e-02	ci left: 2.232920e-01	ci right 2.261432e-01	k: 74156	n:330000
KS ci ratio: 1.751746e-01	ci left: 1.382428e-03	ci right 1.650690e-03	k: 499	n:330000
MRPS31   330000 perm   102 sec   (3232 perm/sec)   p_kst 1.512121e-03   p_cons 2.247152e-01   p_joint 8.212121e-04

Joint ci ratio: 2.777997e-01	ci left: 5.040775e-04	ci right 6.693336e-04	k: 198	n:340000
Cons ci ratio: 1.249047e-02	ci left: 2.232158e-01	ci right 2.260242e-01	k: 76370	n:340000
KS ci ratio: 1.732800e-01	ci left: 1.372710e-03	ci right 1.635903e-03	k: 510	n:340000
MRPS31   340000 perm   106 sec   (3197 perm/sec)   p_kst 1.500000e-03   p_cons 2.246176e-01   p_joint 5.823529e-04

Joint ci ratio: 2.881275e-01	ci left: 4.525108e-04	ci right 6.073825e-04	k: 184	n:350000
Cons ci ratio: 1.231318e-02	ci left: 2.231670e-01	ci right 2.259347e-01	k: 78592	n:350000
KS ci ratio: 1.698241e-01	ci left: 1.390915e-03	ci right 1.651736e-03	k: 531	n:350000
MRPS31   350000 perm   111 sec   (3161 perm/sec)   p_kst 1.517143e-03   p_cons 2.245486e-01   p_joint 5.257143e-04

Joint ci ratio: 2.835656e-01	ci left: 4.554131e-04	ci right 6.083688e-04	k: 190	n:360000
Cons ci ratio: 1.213956e-02	ci left: 2.232265e-01	ci right 2.259557e-01	k: 80852	n:360000
KS ci ratio: 1.680962e-01	ci left: 1.381541e-03	ci right 1.637701e-03	k: 542	n:360000
MRPS31   360000 perm   115 sec   (3120 perm/sec)   p_kst 1.505556e-03   p_cons 2.245889e-01   p_joint 5.277778e-04

Joint ci ratio: 2.806427e-01	ci left: 4.531506e-04	ci right 6.035002e-04	k: 194	n:370000
Cons ci ratio: 1.197085e-02	ci left: 2.233478e-01	ci right 2.260403e-01	k: 83136	n:370000
KS ci ratio: 1.661199e-01	ci left: 1.377868e-03	ci right 1.630043e-03	k: 555	n:370000
MRPS31   370000 perm   120 sec   (3086 perm/sec)   p_kst 1.500000e-03   p_cons 2.246919e-01   p_joint 5.243243e-04

Joint ci ratio: 2.785093e-01	ci left: 4.485668e-04	ci right 5.960656e-04	k: 197	n:380000
Cons ci ratio: 1.181746e-02	ci left: 2.232135e-01	ci right 2.258696e-01	k: 85325	n:380000
KS ci ratio: 1.645014e-01	ci left: 1.369357e-03	ci right 1.617291e-03	k: 566	n:380000
MRPS31   380000 perm   124 sec   (3052 perm/sec)   p_kst 1.489474e-03   p_cons 2.245395e-01   p_joint 5.184211e-04

Joint ci ratio: 2.717303e-01	ci left: 4.609381e-04	ci right 6.081865e-04	k: 207	n:390000
Cons ci ratio: 1.166982e-02	ci left: 2.230863e-01	ci right 2.257075e-01	k: 87514	n:390000
KS ci ratio: 1.615360e-01	ci left: 1.385896e-03	ci right 1.631862e-03	k: 587	n:390000
MRPS31   390000 perm   129 sec   (3016 perm/sec)   p_kst 1.505128e-03   p_cons 2.243949e-01   p_joint 5.307692e-04

Joint ci ratio: 2.685221e-01	ci left: 4.610681e-04	ci right 6.063263e-04	k: 212	n:400000
Cons ci ratio: 1.152087e-02	ci left: 2.231678e-01	ci right 2.257562e-01	k: 89784	n:400000
KS ci ratio: 1.599131e-01	ci left: 1.380042e-03	ci right 1.622272e-03	k: 599	n:400000
MRPS31   400000 perm   134 sec   (2984 perm/sec)   p_kst 1.497500e-03   p_cons 2.244600e-01   p_joint 5.300000e-04

Joint ci ratio: 2.624309e-01	ci left: 4.725903e-04	ci right 6.175469e-04	k: 222	n:410000
Cons ci ratio: 1.137828e-02	ci left: 2.232211e-01	ci right 2.257779e-01	k: 92044	n:410000
KS ci ratio: 1.571848e-01	ci left: 1.395571e-03	ci right 1.635953e-03	k: 620	n:410000
MRPS31   410000 perm   139 sec   (2952 perm/sec)   p_kst 1.512195e-03   p_cons 2.244976e-01   p_joint 5.414634e-04

Joint ci ratio: 2.606840e-01	ci left: 4.680125e-04	ci right 6.104537e-04	k: 225	n:420000
Cons ci ratio: 1.124116e-02	ci left: 2.232626e-01	ci right 2.257888e-01	k: 94300	n:420000
KS ci ratio: 1.556884e-01	ci left: 1.389795e-03	ci right 1.626691e-03	k: 632	n:420000
MRPS31   420000 perm   144 sec   (2921 perm/sec)   p_kst 1.504762e-03   p_cons 2.245238e-01   p_joint 5.357143e-04

Joint ci ratio: 2.584077e-01	ci left: 4.658256e-04	ci right 6.061634e-04	k: 229	n:430000
Cons ci ratio: 1.111037e-02	ci left: 2.232559e-01	ci right 2.257525e-01	k: 96536	n:430000
KS ci ratio: 1.539949e-01	ci left: 1.388771e-03	ci right 1.622680e-03	k: 646	n:430000
MRPS31   430000 perm   149 sec   (2891 perm/sec)   p_kst 1.502326e-03   p_cons 2.245023e-01   p_joint 5.325581e-04

Joint ci ratio: 2.561900e-01	ci left: 4.637433e-04	ci right 6.020630e-04	k: 233	n:440000
Cons ci ratio: 1.098705e-02	ci left: 2.231544e-01	ci right 2.256220e-01	k: 98730	n:440000
KS ci ratio: 1.523556e-01	ci left: 1.387807e-03	ci right 1.618838e-03	k: 660	n:440000
MRPS31   440000 perm   154 sec   (2859 perm/sec)   p_kst 1.500000e-03   p_cons 2.243864e-01   p_joint 5.295455e-04

Joint ci ratio: 2.551031e-01	ci left: 4.575974e-04	ci right 5.934127e-04	k: 235	n:450000
Cons ci ratio: 1.086456e-02	ci left: 2.231596e-01	ci right 2.255995e-01	k: 100970	n:450000
KS ci ratio: 1.514431e-01	ci left: 1.374068e-03	ci right 1.601317e-03	k: 668	n:450000
MRPS31   450000 perm   159 sec   (2828 perm/sec)   p_kst 1.484444e-03   p_cons 2.243778e-01   p_joint 5.222222e-04

Joint ci ratio: 2.519206e-01	ci left: 4.598645e-04	ci right 5.943828e-04	k: 241	n:460000
Cons ci ratio: 1.074567e-02	ci left: 2.231777e-01	ci right 2.255910e-01	k: 103216	n:460000
KS ci ratio: 1.494454e-01	ci left: 1.381855e-03	ci right 1.607108e-03	k: 686	n:460000
MRPS31   460000 perm   164 sec   (2799 perm/sec)   p_kst 1.491304e-03   p_cons 2.243826e-01   p_joint 5.239130e-04

Joint ci ratio: 2.503741e-01	ci left: 4.560613e-04	ci right 5.885204e-04	k: 244	n:470000
Cons ci ratio: 1.063469e-02	ci left: 2.230614e-01	ci right 2.254484e-01	k: 105399	n:470000
KS ci ratio: 1.486911e-01	ci left: 1.366791e-03	ci right 1.588364e-03	k: 693	n:470000
MRPS31   470000 perm   170 sec   (2770 perm/sec)   p_kst 1.474468e-03   p_cons 2.242532e-01   p_joint 5.191489e-04

Joint ci ratio: 2.478577e-01	ci left: 4.563264e-04	ci right 5.873252e-04	k: 249	n:480000
Cons ci ratio: 1.051877e-02	ci left: 2.232246e-01	ci right 2.255871e-01	k: 107714	n:480000
KS ci ratio: 1.458786e-01	ci left: 1.392495e-03	ci right 1.613593e-03	k: 720	n:480000
MRPS31   480000 perm   175 sec   (2741 perm/sec)   p_kst 1.500000e-03   p_cons 2.244042e-01   p_joint 5.187500e-04

Joint ci ratio: 2.439840e-01	ci left: 4.623343e-04	ci right 5.926693e-04	k: 257	n:490000
Cons ci ratio: 1.040967e-02	ci left: 2.232773e-01	ci right 2.256157e-01	k: 109978	n:490000
KS ci ratio: 1.441883e-01	ci left: 1.397511e-03	ci right 1.616614e-03	k: 737	n:490000
MRPS31   490000 perm   181 sec   (2713 perm/sec)   p_kst 1.504082e-03   p_cons 2.244449e-01   p_joint 5.244898e-04

Joint ci ratio: 2.393877e-01	ci left: 4.718769e-04	ci right 6.020243e-04	k: 267	n:500000
Cons ci ratio: 1.030933e-02	ci left: 2.231444e-01	ci right 2.254588e-01	k: 112150	n:500000
KS ci ratio: 1.424611e-01	ci left: 1.404271e-03	ci right 1.621571e-03	k: 755	n:500000
MRPS31   500000 perm   186 sec   (2684 perm/sec)   p_kst 1.510000e-03   p_cons 2.243000e-01   p_joint 5.340000e-04

Joint ci ratio: 1.914257e-01	ci left: 7.429373e-04	ci right 9.020374e-04	k: 418	n:510000
Cons ci ratio: 1.020311e-02	ci left: 2.233143e-01	ci right 2.256064e-01	k: 114474	n:510000
KS ci ratio: 1.412521e-01	ci left: 1.401321e-03	ci right 1.616170e-03	k: 768	n:510000
MRPS31   510000 perm   192 sec   (2658 perm/sec)   p_kst 1.505882e-03   p_cons 2.244588e-01   p_joint 8.196078e-04

Joint ci ratio: 1.889608e-01	ci left: 7.487969e-04	ci right 9.068501e-04	k: 429	n:520000
Cons ci ratio: 1.010629e-02	ci left: 2.232648e-01	ci right 2.255345e-01	k: 116687	n:520000
KS ci ratio: 1.398050e-01	ci left: 1.404060e-03	ci right 1.616940e-03	k: 784	n:520000
MRPS31   520000 perm   198 sec   (2632 perm/sec)   p_kst 1.507692e-03   p_cons 2.243981e-01   p_joint 8.250000e-04

Joint ci ratio: 1.874415e-01	ci left: 7.472539e-04	ci right 9.035689e-04	k: 436	n:530000
Cons ci ratio: 1.001527e-02	ci left: 2.231098e-01	ci right 2.253574e-01	k: 118843	n:530000
KS ci ratio: 1.385749e-01	ci left: 1.403064e-03	ci right 1.613766e-03	k: 798	n:530000
MRPS31   530000 perm   203 sec   (2606 perm/sec)   p_kst 1.505660e-03   p_cons 2.242321e-01   p_joint 8.226415e-04

Joint ci ratio: 1.870152e-01	ci left: 7.369456e-04	ci right 8.907138e-04	k: 438	n:540000
Cons ci ratio: 9.922648e-03	ci left: 2.231011e-01	ci right 2.253277e-01	k: 121075	n:540000
KS ci ratio: 1.380587e-01	ci left: 1.387807e-03	ci right 1.595378e-03	k: 804	n:540000
MRPS31   540000 perm   210 sec   (2574 perm/sec)   p_kst 1.488889e-03   p_cons 2.242130e-01   p_joint 8.111111e-04

Joint ci ratio: 1.857505e-01	ci left: 7.339465e-04	ci right 8.859367e-04	k: 444	n:550000
Cons ci ratio: 9.831882e-03	ci left: 2.231165e-01	ci right 2.253228e-01	k: 123320	n:550000
KS ci ratio: 1.369575e-01	ci left: 1.385397e-03	ci right 1.590820e-03	k: 817	n:550000
MRPS31   550000 perm   216 sec   (2548 perm/sec)   p_kst 1.485455e-03   p_cons 2.242182e-01   p_joint 8.072727e-04

Joint ci ratio: 1.841030e-01	ci left: 7.344648e-04	ci right 8.850626e-04	k: 452	n:560000
Cons ci ratio: 9.744763e-03	ci left: 2.230886e-01	ci right 2.252750e-01	k: 125541	n:560000
KS ci ratio: 1.356373e-01	ci left: 1.388255e-03	ci right 1.591958e-03	k: 833	n:560000
MRPS31   560000 perm   222 sec   (2526 perm/sec)   p_kst 1.487500e-03   p_cons 2.241804e-01   p_joint 8.071429e-04

Joint ci ratio: 2.177157e-01	ci left: 5.065615e-04	ci right 6.319386e-04	k: 323	n:570000
Cons ci ratio: 9.654854e-03	ci left: 2.232439e-01	ci right 2.254115e-01	k: 127866	n:570000
KS ci ratio: 1.347520e-01	ci left: 1.382545e-03	ci right 1.583980e-03	k: 844	n:570000
MRPS31   570000 perm   228 sec   (2503 perm/sec)   p_kst 1.480702e-03   p_cons 2.243263e-01   p_joint 5.666667e-04

Joint ci ratio: 1.811288e-01	ci left: 7.338183e-04	ci right 8.815862e-04	k: 467	n:580000
Cons ci ratio: 9.568951e-03	ci left: 2.233372e-01	ci right 2.254863e-01	k: 130158	n:580000
KS ci ratio: 1.334164e-01	ci left: 1.387036e-03	ci right 1.586962e-03	k: 861	n:580000
MRPS31   580000 perm   234 sec   (2481 perm/sec)   p_kst 1.484483e-03   p_cons 2.244103e-01   p_joint 8.051724e-04

Joint ci ratio: 1.797894e-01	ci left: 7.327091e-04	ci right 8.790439e-04	k: 474	n:590000
Cons ci ratio: 9.488072e-03	ci left: 2.233258e-01	ci right 2.254565e-01	k: 132390	n:590000
KS ci ratio: 1.323461e-01	ci left: 1.386466e-03	ci right 1.584582e-03	k: 875	n:590000
MRPS31   590000 perm   240 sec   (2460 perm/sec)   p_kst 1.483051e-03   p_cons 2.243898e-01   p_joint 8.033898e-04

Joint ci ratio: 1.782942e-01	ci left: 7.332331e-04	ci right 8.783234e-04	k: 482	n:600000
Cons ci ratio: 9.407587e-03	ci left: 2.233748e-01	ci right 2.254878e-01	k: 134658	n:600000
KS ci ratio: 1.314491e-01	ci left: 1.382699e-03	ci right 1.578832e-03	k: 887	n:600000
MRPS31   600000 perm   246 sec   (2439 perm/sec)   p_kst 1.478333e-03   p_cons 2.244300e-01   p_joint 8.033333e-04

Joint ci ratio: 1.761193e-01	ci left: 7.400127e-04	ci right 8.844682e-04	k: 494	n:610000
Cons ci ratio: 9.330347e-03	ci left: 2.233765e-01	ci right 2.254720e-01	k: 136898	n:610000
KS ci ratio: 1.299928e-01	ci left: 1.391747e-03	ci right 1.586808e-03	k: 907	n:610000
MRPS31   610000 perm   252 sec   (2418 perm/sec)   p_kst 1.486885e-03   p_cons 2.244230e-01   p_joint 8.098361e-04

Joint ci ratio: 1.733390e-01	ci left: 7.527554e-04	ci right 8.971359e-04	k: 510	n:620000
Cons ci ratio: 9.255322e-03	ci left: 2.233653e-01	ci right 2.254438e-01	k: 139130	n:620000
KS ci ratio: 1.285145e-01	ci left: 1.402075e-03	ci right 1.596179e-03	k: 928	n:620000
MRPS31   620000 perm   259 sec   (2397 perm/sec)   p_kst 1.496774e-03   p_cons 2.244032e-01   p_joint 8.225806e-04

Joint ci ratio: 1.719979e-01	ci left: 7.529565e-04	ci right 8.961423e-04	k: 518	n:630000
Cons ci ratio: 9.179482e-03	ci left: 2.234527e-01	ci right 2.255149e-01	k: 141424	n:630000
KS ci ratio: 1.278289e-01	ci left: 1.395184e-03	ci right 1.587225e-03	k: 938	n:630000
MRPS31   630000 perm   265 sec   (2376 perm/sec)   p_kst 1.488889e-03   p_cons 2.244825e-01   p_joint 8.222222e-04

Joint ci ratio: 1.770196e-01	ci left: 6.978560e-04	ci right 8.348531e-04	k: 489	n:640000
Cons ci ratio: 9.109482e-03	ci left: 2.233846e-01	ci right 2.254304e-01	k: 143620	n:640000
KS ci ratio: 1.268866e-01	ci left: 1.394562e-03	ci right 1.584996e-03	k: 952	n:640000
MRPS31   640000 perm   272 sec   (2356 perm/sec)   p_kst 1.487500e-03   p_cons 2.244063e-01   p_joint 7.640625e-04

Joint ci ratio: 1.700439e-01	ci left: 7.474598e-04	ci right 8.878199e-04	k: 530	n:650000
Cons ci ratio: 9.039020e-03	ci left: 2.233970e-01	ci right 2.254270e-01	k: 145867	n:650000
KS ci ratio: 1.262265e-01	ci left: 1.388005e-03	ci right 1.576483e-03	k: 962	n:650000
MRPS31   650000 perm   278 sec   (2334 perm/sec)   p_kst 1.480000e-03   p_cons 2.244108e-01   p_joint 8.153846e-04

Joint ci ratio: 1.738548e-01	ci left: 7.027843e-04	ci right 8.380233e-04	k: 507	n:660000
Cons ci ratio: 8.967281e-03	ci left: 2.235210e-01	ci right 2.255359e-01	k: 148188	n:660000
KS ci ratio: 1.248083e-01	ci left: 1.399261e-03	ci right 1.586976e-03	k: 984	n:660000
MRPS31   660000 perm   285 sec   (2313 perm/sec)   p_kst 1.490909e-03   p_cons 2.245273e-01   p_joint 7.681818e-04

Joint ci ratio: 1.669288e-01	ci left: 7.537399e-04	ci right 8.924258e-04	k: 550	n:670000
Cons ci ratio: 8.901609e-03	ci left: 2.234701e-01	ci right 2.254696e-01	k: 150394	n:670000
KS ci ratio: 1.243051e-01	ci left: 1.389945e-03	ci right 1.575602e-03	k: 992	n:670000
MRPS31   670000 perm   292 sec   (2293 perm/sec)   p_kst 1.480597e-03   p_cons 2.244687e-01   p_joint 8.208955e-04

Joint ci ratio: 1.725028e-01	ci left: 6.933686e-04	ci right 8.256501e-04	k: 515	n:680000
Cons ci ratio: 8.835454e-03	ci left: 2.234955e-01	ci right 2.254804e-01	k: 152651	n:680000
KS ci ratio: 1.233768e-01	ci left: 1.390880e-03	ci right 1.575174e-03	k: 1007	n:680000
MRPS31   680000 perm   299 sec   (2272 perm/sec)   p_kst 1.480882e-03   p_cons 2.244868e-01   p_joint 7.573529e-04

Joint ci ratio: 1.713445e-01	ci left: 6.930282e-04	ci right 8.242653e-04	k: 522	n:690000
Cons ci ratio: 8.771702e-03	ci left: 2.234826e-01	ci right 2.254530e-01	k: 154882	n:690000
KS ci ratio: 1.222894e-01	ci left: 1.396008e-03	ci right 1.579233e-03	k: 1025	n:690000
MRPS31   690000 perm   307 sec   (2251 perm/sec)   p_kst 1.485507e-03   p_cons 2.244667e-01   p_joint 7.565217e-04

Joint ci ratio: 1.703702e-01	ci left: 6.913327e-04	ci right 8.214277e-04	k: 528	n:700000
Cons ci ratio: 8.708418e-03	ci left: 2.235059e-01	ci right 2.254621e-01	k: 157138	n:700000
KS ci ratio: 1.214636e-01	ci left: 1.395455e-03	ci right 1.577282e-03	k: 1039	n:700000
MRPS31   700000 perm   314 sec   (2230 perm/sec)   p_kst 1.484286e-03   p_cons 2.244829e-01   p_joint 7.542857e-04

Joint ci ratio: 1.687821e-01	ci left: 6.950824e-04	ci right 8.245399e-04	k: 538	n:710000
Cons ci ratio: 8.648197e-03	ci left: 2.234596e-01	ci right 2.254018e-01	k: 159345	n:710000
KS ci ratio: 1.204827e-01	ci left: 1.399020e-03	ci right 1.579734e-03	k: 1056	n:710000
MRPS31   710000 perm   321 sec   (2213 perm/sec)   p_kst 1.487324e-03   p_cons 2.244296e-01   p_joint 7.577465e-04

Joint ci ratio: 1.673902e-01	ci left: 6.974028e-04	ci right 8.261132e-04	k: 547	n:720000
Cons ci ratio: 8.589586e-03	ci left: 2.233993e-01	ci right 2.253279e-01	k: 161541	n:720000
KS ci ratio: 1.198048e-01	ci left: 1.395755e-03	ci right 1.574961e-03	k: 1068	n:720000
MRPS31   720000 perm   328 sec   (2195 perm/sec)   p_kst 1.483333e-03   p_cons 2.243625e-01   p_joint 7.597222e-04

Joint ci ratio: 1.663314e-01	ci left: 6.970379e-04	ci right 8.247857e-04	k: 554	n:730000
Cons ci ratio: 8.529397e-03	ci left: 2.234530e-01	ci right 2.253684e-01	k: 163819	n:730000
KS ci ratio: 1.191382e-01	ci left: 1.392582e-03	ci right 1.570316e-03	k: 1080	n:730000
MRPS31   730000 perm   335 sec   (2178 perm/sec)   p_kst 1.479452e-03   p_cons 2.244096e-01   p_joint 7.589041e-04

Joint ci ratio: 1.655874e-01	ci left: 6.940945e-04	ci right 8.206772e-04	k: 559	n:740000
Cons ci ratio: 8.471573e-03	ci left: 2.234593e-01	ci right 2.253617e-01	k: 166063	n:740000
KS ci ratio: 1.185370e-01	ci left: 1.388186e-03	ci right 1.564402e-03	k: 1091	n:740000
MRPS31   740000 perm   342 sec   (2161 perm/sec)   p_kst 1.474324e-03   p_cons 2.244095e-01   p_joint 7.554054e-04

Joint ci ratio: 1.883287e-01	ci left: 5.229711e-04	ci right 6.329459e-04	k: 432	n:750000
Cons ci ratio: 8.414491e-03	ci left: 2.234829e-01	ci right 2.253726e-01	k: 168320	n:750000
KS ci ratio: 1.176247e-01	ci left: 1.391674e-03	ci right 1.566879e-03	k: 1108	n:750000
MRPS31   750000 perm   350 sec   (2145 perm/sec)   p_kst 1.477333e-03   p_cons 2.244267e-01   p_joint 5.760000e-04

Joint ci ratio: 1.868244e-01	ci left: 5.248680e-04	ci right 6.342601e-04	k: 439	n:760000
Cons ci ratio: 8.357568e-03	ci left: 2.235465e-01	ci right 2.254240e-01	k: 170608	n:760000
KS ci ratio: 1.167852e-01	ci left: 1.393798e-03	ci right 1.567932e-03	k: 1124	n:760000
MRPS31   760000 perm   357 sec   (2128 perm/sec)   p_kst 1.478947e-03   p_cons 2.244842e-01   p_joint 5.776316e-04

Joint ci ratio: 1.859812e-01	ci left: 5.230039e-04	ci right 6.314600e-04	k: 443	n:770000
Cons ci ratio: 8.302435e-03	ci left: 2.235814e-01	ci right 2.254467e-01	k: 172875	n:770000
KS ci ratio: 1.161675e-01	ci left: 1.390827e-03	ci right 1.563607e-03	k: 1136	n:770000
MRPS31   770000 perm   365 sec   (2112 perm/sec)   p_kst 1.475325e-03   p_cons 2.245130e-01   p_joint 5.753247e-04

Joint ci ratio: 1.609138e-01	ci left: 6.990796e-04	ci right 8.226254e-04	k: 592	n:780000
Cons ci ratio: 8.248652e-03	ci left: 2.236039e-01	ci right 2.254572e-01	k: 175133	n:780000
KS ci ratio: 1.152585e-01	ci left: 1.395405e-03	ci right 1.567305e-03	k: 1154	n:780000
MRPS31   780000 perm   372 sec   (2095 perm/sec)   p_kst 1.479487e-03   p_cons 2.245295e-01   p_joint 7.589744e-04

Joint ci ratio: 1.602399e-01	ci left: 6.963052e-04	ci right 8.187957e-04	k: 597	n:790000
Cons ci ratio: 8.196795e-03	ci left: 2.235879e-01	ci right 2.254293e-01	k: 177361	n:790000
KS ci ratio: 1.146154e-01	ci left: 1.393725e-03	ci right 1.564395e-03	k: 1167	n:790000
MRPS31   790000 perm   380 sec   (2078 perm/sec)   p_kst 1.477215e-03   p_cons 2.245076e-01   p_joint 7.556962e-04

Joint ci ratio: 1.587858e-01	ci left: 7.008027e-04	ci right 8.228590e-04	k: 608	n:800000
Cons ci ratio: 8.146109e-03	ci left: 2.235636e-01	ci right 2.253934e-01	k: 179582	n:800000
KS ci ratio: 1.138383e-01	ci left: 1.395732e-03	ci right 1.565411e-03	k: 1183	n:800000
MRPS31   800000 perm   388 sec   (2062 perm/sec)   p_kst 1.478750e-03   p_cons 2.244775e-01   p_joint 7.600000e-04

Joint ci ratio: 1.572438e-01	ci left: 7.063800e-04	ci right 8.281002e-04	k: 620	n:810000
Cons ci ratio: 8.095088e-03	ci left: 2.235942e-01	ci right 2.254127e-01	k: 181847	n:810000
KS ci ratio: 1.131239e-01	ci left: 1.396493e-03	ci right 1.565129e-03	k: 1198	n:810000
MRPS31   810000 perm   396 sec   (2045 perm/sec)   p_kst 1.479012e-03   p_cons 2.245025e-01   p_joint 7.654321e-04

Joint ci ratio: 1.561164e-01	ci left: 7.083109e-04	ci right 8.294069e-04	k: 629	n:820000
Cons ci ratio: 8.045323e-03	ci left: 2.236107e-01	ci right 2.254181e-01	k: 184101	n:820000
KS ci ratio: 1.125157e-01	ci left: 1.394869e-03	ci right 1.562343e-03	k: 1211	n:820000
MRPS31   820000 perm   404 sec   (2029 perm/sec)   p_kst 1.476829e-03   p_cons 2.245134e-01   p_joint 7.670732e-04

Joint ci ratio: 1.550130e-01	ci left: 7.101984e-04	ci right 8.306792e-04	k: 638	n:830000
Cons ci ratio: 7.997545e-03	ci left: 2.235798e-01	ci right 2.253763e-01	k: 186316	n:830000
KS ci ratio: 1.120089e-01	ci left: 1.390944e-03	ci right 1.557145e-03	k: 1222	n:830000
MRPS31   830000 perm   412 sec   (2013 perm/sec)   p_kst 1.472289e-03   p_cons 2.244771e-01   p_joint 7.686747e-04

Joint ci ratio: 1.544103e-01	ci left: 7.074655e-04	ci right 8.269729e-04	k: 643	n:840000
Cons ci ratio: 7.950744e-03	ci left: 2.235439e-01	ci right 2.253295e-01	k: 188526	n:840000
KS ci ratio: 1.114635e-01	ci left: 1.388272e-03	ci right 1.553292e-03	k: 1234	n:840000
MRPS31   840000 perm   420 sec   (1998 perm/sec)   p_kst 1.469048e-03   p_cons 2.244357e-01   p_joint 7.654762e-04

Joint ci ratio: 1.534601e-01	ci left: 7.081917e-04	ci right 8.270178e-04	k: 651	n:850000
Cons ci ratio: 7.904728e-03	ci left: 2.235099e-01	ci right 2.252849e-01	k: 190737	n:850000
KS ci ratio: 1.108816e-01	ci left: 1.386808e-03	ci right 1.550737e-03	k: 1247	n:850000
MRPS31   850000 perm   429 sec   (1979 perm/sec)   p_kst 1.467059e-03   p_cons 2.243965e-01   p_joint 7.658824e-04

Joint ci ratio: 1.472619e-01	ci left: 7.626259e-04	ci right 8.849627e-04	k: 707	n:860000
Cons ci ratio: 7.859580e-03	ci left: 2.234733e-01	ci right 2.252378e-01	k: 192945	n:860000
KS ci ratio: 1.102649e-01	ci left: 1.386511e-03	ci right 1.549435e-03	k: 1261	n:860000
MRPS31   860000 perm   438 sec   (1965 perm/sec)   p_kst 1.466279e-03   p_cons 2.243547e-01   p_joint 8.220930e-04

Joint ci ratio: 1.466420e-01	ci left: 7.605030e-04	ci right 8.819407e-04	k: 713	n:870000
Cons ci ratio: 7.815972e-03	ci left: 2.234032e-01	ci right 2.251573e-01	k: 195123	n:870000
KS ci ratio: 1.097445e-01	ci left: 1.383988e-03	ci right 1.545798e-03	k: 1273	n:870000
MRPS31   870000 perm   446 sec   (1951 perm/sec)   p_kst 1.463218e-03   p_cons 2.242793e-01   p_joint 8.195402e-04

Joint ci ratio: 1.460299e-01	ci left: 7.584294e-04	ci right 8.789864e-04	k: 719	n:880000
Cons ci ratio: 7.771685e-03	ci left: 2.233971e-01	ci right 2.251411e-01	k: 197356	n:880000
KS ci ratio: 1.091890e-01	ci left: 1.382629e-03	ci right 1.543409e-03	k: 1286	n:880000
MRPS31   880000 perm   455 sec   (1935 perm/sec)   p_kst 1.461364e-03   p_cons 2.242682e-01   p_joint 8.170455e-04

Joint ci ratio: 1.448277e-01	ci left: 7.629004e-04	ci right 8.830834e-04	k: 731	n:890000
Cons ci ratio: 7.726720e-03	ci left: 2.234551e-01	ci right 2.251894e-01	k: 199646	n:890000
KS ci ratio: 1.083085e-01	ci left: 1.390047e-03	ci right 1.550304e-03	k: 1307	n:890000
MRPS31   890000 perm   463 sec   (1921 perm/sec)   p_kst 1.468539e-03   p_cons 2.243213e-01   p_joint 8.213483e-04

Joint ci ratio: 1.442379e-01	ci left: 7.608492e-04	ci right 8.801790e-04	k: 737	n:900000
Cons ci ratio: 7.682134e-03	ci left: 2.235296e-01	ci right 2.252544e-01	k: 201952	n:900000
KS ci ratio: 1.079381e-01	ci left: 1.384332e-03	ci right 1.543349e-03	k: 1316	n:900000
MRPS31   900000 perm   472 sec   (1906 perm/sec)   p_kst 1.462222e-03   p_cons 2.243911e-01   p_joint 8.188889e-04

Joint ci ratio: 1.438490e-01	ci left: 7.567253e-04	ci right 8.750608e-04	k: 741	n:910000
Cons ci ratio: 7.639059e-03	ci left: 2.235684e-01	ci right 2.252839e-01	k: 204227	n:910000
KS ci ratio: 1.073286e-01	ci left: 1.385159e-03	ci right 1.543316e-03	k: 1331	n:910000
MRPS31   910000 perm   481 sec   (1892 perm/sec)   p_kst 1.462637e-03   p_cons 2.244253e-01   p_joint 8.142857e-04

Joint ci ratio: 1.428892e-01	ci left: 7.589798e-04	ci right 8.768084e-04	k: 751	n:920000
Cons ci ratio: 7.598763e-03	ci left: 2.235120e-01	ci right 2.252180e-01	k: 206415	n:920000
KS ci ratio: 1.068088e-01	ci left: 1.383855e-03	ci right 1.541050e-03	k: 1344	n:920000
MRPS31   920000 perm   490 sec   (1878 perm/sec)   p_kst 1.460870e-03   p_cons 2.243641e-01   p_joint 8.163043e-04

Joint ci ratio: 1.421352e-01	ci left: 7.591141e-04	ci right 8.762890e-04	k: 759	n:930000
Cons ci ratio: 7.558469e-03	ci left: 2.234859e-01	ci right 2.251825e-01	k: 208630	n:930000
KS ci ratio: 1.061790e-01	ci left: 1.385721e-03	ci right 1.542142e-03	k: 1360	n:930000
MRPS31   930000 perm   499 sec   (1864 perm/sec)   p_kst 1.462366e-03   p_cons 2.243333e-01   p_joint 8.161290e-04

Joint ci ratio: 1.414852e-01	ci left: 7.582210e-04	ci right 8.746777e-04	k: 766	n:940000
Cons ci ratio: 7.517130e-03	ci left: 2.235378e-01	ci right 2.252256e-01	k: 210918	n:940000
KS ci ratio: 1.054836e-01	ci left: 1.389622e-03	ci right 1.545391e-03	k: 1378	n:940000
MRPS31   940000 perm   508 sec   (1851 perm/sec)   p_kst 1.465957e-03   p_cons 2.243809e-01   p_joint 8.148936e-04

Joint ci ratio: 1.405716e-01	ci left: 7.603947e-04	ci right 8.763679e-04	k: 776	n:950000
Cons ci ratio: 7.477729e-03	ci left: 2.235299e-01	ci right 2.252087e-01	k: 213150	n:950000
KS ci ratio: 1.046891e-01	ci left: 1.396519e-03	ci right 1.551810e-03	k: 1399	n:950000
MRPS31   950000 perm   517 sec   (1836 perm/sec)   p_kst 1.472632e-03   p_cons 2.243684e-01   p_joint 8.168421e-04

Joint ci ratio: 1.398535e-01	ci left: 7.605149e-04	ci right 8.758646e-04	k: 784	n:960000
Cons ci ratio: 7.438585e-03	ci left: 2.235387e-01	ci right 2.252088e-01	k: 215398	n:960000
KS ci ratio: 1.039857e-01	ci left: 1.401247e-03	ci right 1.555953e-03	k: 1418	n:960000
MRPS31   960000 perm   526 sec   (1824 perm/sec)   p_kst 1.477083e-03   p_cons 2.243729e-01   p_joint 8.166667e-04

Joint ci ratio: 1.393222e-01	ci left: 7.586441e-04	ci right 8.732366e-04	k: 790	n:970000
Cons ci ratio: 7.399917e-03	ci left: 2.235536e-01	ci right 2.252150e-01	k: 217652	n:970000
KS ci ratio: 1.036214e-01	ci left: 1.396842e-03	ci right 1.550489e-03	k: 1428	n:970000
MRPS31   970000 perm   535 sec   (1812 perm/sec)   p_kst 1.472165e-03   p_cons 2.243835e-01   p_joint 8.144330e-04

Joint ci ratio: 1.387970e-01	ci left: 7.568122e-04	ci right 8.706614e-04	k: 796	n:980000
Cons ci ratio: 7.362883e-03	ci left: 2.235193e-01	ci right 2.251721e-01	k: 219858	n:980000
KS ci ratio: 1.032610e-01	ci left: 1.392529e-03	ci right 1.545136e-03	k: 1438	n:980000
MRPS31   980000 perm   545 sec   (1799 perm/sec)   p_kst 1.467347e-03   p_cons 2.243449e-01   p_joint 8.122449e-04

Joint ci ratio: 1.381056e-01	ci left: 7.569685e-04	ci right 8.702274e-04	k: 804	n:990000
Cons ci ratio: 7.325931e-03	ci left: 2.235079e-01	ci right 2.251523e-01	k: 222086	n:990000
KS ci ratio: 1.027270e-01	ci left: 1.393224e-03	ci right 1.545070e-03	k: 1453	n:990000
MRPS31   990000 perm   554 sec   (1787 perm/sec)   p_kst 1.467677e-03   p_cons 2.243293e-01   p_joint 8.121212e-04

Joint ci ratio: 1.373399e-01	ci left: 7.580888e-04	ci right 8.708350e-04	k: 813	n:1000000
Cons ci ratio: 7.289069e-03	ci left: 2.235187e-01	ci right 2.251549e-01	k: 224336	n:1000000
KS ci ratio: 1.022360e-01	ci left: 1.392933e-03	ci right 1.543978e-03	k: 1467	n:1000000
MRPS31   1000000 perm   564 sec   (1775 perm/sec)   p_kst 1.467000e-03   p_cons 2.243360e-01   p_joint 8.130000e-04

Joint ci ratio: 1.363384e-01	ci left: 7.620575e-04	ci right 8.745004e-04	k: 825	n:1010000
Cons ci ratio: 7.253191e-03	ci left: 2.235086e-01	ci right 2.251366e-01	k: 226565	n:1010000
KS ci ratio: 1.016490e-01	ci left: 1.395544e-03	ci right 1.545952e-03	k: 1484	n:1010000
MRPS31   1010000 perm   573 sec   (1762 perm/sec)   p_kst 1.469307e-03   p_cons 2.243218e-01   p_joint 8.168317e-04

Joint ci ratio: 1.358460e-01	ci left: 7.602684e-04	ci right 8.720094e-04	k: 831	n:1020000
Cons ci ratio: 7.217370e-03	ci left: 2.235212e-01	ci right 2.251412e-01	k: 228817	n:1020000
KS ci ratio: 1.012409e-01	ci left: 1.393329e-03	ci right 1.542859e-03	k: 1496	n:1020000
MRPS31   1020000 perm   583 sec   (1750 perm/sec)   p_kst 1.466667e-03   p_cons 2.243304e-01   p_joint 8.147059e-04

Joint ci ratio: 1.349566e-01	ci left: 7.632051e-04	ci right 8.745844e-04	k: 842	n:1030000
Cons ci ratio: 7.181654e-03	ci left: 2.235539e-01	ci right 2.251661e-01	k: 231090	n:1030000
KS ci ratio: 1.007375e-01	ci left: 1.393996e-03	ci right 1.542810e-03	k: 1511	n:1030000
MRPS31   1030000 perm   592 sec   (1739 perm/sec)   p_kst 1.466990e-03   p_cons 2.243592e-01   p_joint 8.174757e-04

Joint ci ratio: 1.343999e-01	ci left: 7.623705e-04	ci right 8.731324e-04	k: 849	n:1040000
Cons ci ratio: 7.147036e-03	ci left: 2.235582e-01	ci right 2.251626e-01	k: 233334	n:1040000
KS ci ratio: 1.002086e-01	ci left: 1.395591e-03	ci right 1.543746e-03	k: 1527	n:1040000
MRPS31   1040000 perm   602 sec   (1729 perm/sec)   p_kst 1.468269e-03   p_cons 2.243596e-01   p_joint 8.163462e-04

Joint ci ratio: 1.340850e-01	ci left: 7.587913e-04	ci right 8.687543e-04	k: 853	n:1050000
Cons ci ratio: 7.113050e-03	ci left: 2.235557e-01	ci right 2.251525e-01	k: 235571	n:1050000
KS ci ratio: 9.975267e-02	ci left: 1.395299e-03	ci right 1.542711e-03	k: 1541	n:1050000
MRPS31   1050000 perm   611 sec   (1718 perm/sec)   p_kst 1.467619e-03   p_cons 2.243533e-01   p_joint 8.123810e-04

Joint ci ratio: 1.337724e-01	ci left: 7.552800e-04	ci right 8.644586e-04	k: 857	n:1060000
Cons ci ratio: 7.079313e-03	ci left: 2.235646e-01	ci right 2.251539e-01	k: 237820	n:1060000
KS ci ratio: 9.943101e-02	ci left: 1.391335e-03	ci right 1.537826e-03	k: 1551	n:1060000
MRPS31   1060000 perm   621 sec   (1707 perm/sec)   p_kst 1.463208e-03   p_cons 2.243585e-01   p_joint 8.084906e-04

Joint ci ratio: 1.331530e-01	ci left: 7.554483e-04	ci right 8.641057e-04	k: 865	n:1070000
Cons ci ratio: 7.045447e-03	ci left: 2.236033e-01	ci right 2.251851e-01	k: 240101	n:1070000
KS ci ratio: 9.898558e-02	ci left: 1.391091e-03	ci right 1.536862e-03	k: 1565	n:1070000
MRPS31   1070000 perm   631 sec   (1696 perm/sec)   p_kst 1.462617e-03   p_cons 2.243935e-01   p_joint 8.084112e-04

Joint ci ratio: 1.319393e-01	ci left: 7.627772e-04	ci right 8.714102e-04	k: 881	n:1080000
Cons ci ratio: 7.013424e-03	ci left: 2.235737e-01	ci right 2.251481e-01	k: 242309	n:1080000
KS ci ratio: 9.820433e-02	ci left: 1.400789e-03	ci right 1.546351e-03	k: 1590	n:1080000
MRPS31   1080000 perm   641 sec   (1685 perm/sec)   p_kst 1.472222e-03   p_cons 2.243602e-01   p_joint 8.157407e-04

Joint ci ratio: 1.313450e-01	ci left: 7.628770e-04	ci right 8.709966e-04	k: 889	n:1090000
Cons ci ratio: 6.983233e-03	ci left: 2.234751e-01	ci right 2.250420e-01	k: 244441	n:1090000
KS ci ratio: 9.759261e-02	ci left: 1.405837e-03	ci right 1.550961e-03	k: 1610	n:1090000
MRPS31   1090000 perm   651 sec   (1675 perm/sec)   p_kst 1.477064e-03   p_cons 2.242578e-01   p_joint 8.155963e-04

Joint ci ratio: 1.305406e-01	ci left: 7.656142e-04	ci right 8.734058e-04	k: 900	n:1100000
Cons ci ratio: 6.951992e-03	ci left: 2.234500e-01	ci right 2.250097e-01	k: 246652	n:1100000
KS ci ratio: 9.717133e-02	ci left: 1.405474e-03	ci right 1.549899e-03	k: 1624	n:1100000
MRPS31   1100000 perm   661 sec   (1665 perm/sec)   p_kst 1.476364e-03   p_cons 2.242291e-01   p_joint 8.181818e-04

Joint ci ratio: 1.302520e-01	ci left: 7.622028e-04	ci right 8.692585e-04	k: 904	n:1110000
Cons ci ratio: 6.921508e-03	ci left: 2.234082e-01	ci right 2.249608e-01	k: 248844	n:1110000
KS ci ratio: 9.690361e-02	ci left: 1.400723e-03	ci right 1.544241e-03	k: 1633	n:1110000
MRPS31   1110000 perm   671 sec   (1655 perm/sec)   p_kst 1.471171e-03   p_cons 2.241838e-01   p_joint 8.144144e-04

Joint ci ratio: 1.298225e-01	ci left: 7.605802e-04	ci right 8.670286e-04	k: 910	n:1120000
Cons ci ratio: 6.890624e-03	ci left: 2.234074e-01	ci right 2.249530e-01	k: 251081	n:1120000
KS ci ratio: 9.652049e-02	ci left: 1.399543e-03	ci right 1.542341e-03	k: 1646	n:1120000
MRPS31   1120000 perm   681 sec   (1645 perm/sec)   p_kst 1.469643e-03   p_cons 2.241795e-01   p_joint 8.125000e-04

Joint ci ratio: 1.293972e-01	ci left: 7.589870e-04	ci right 8.648376e-04	k: 916	n:1130000
Cons ci ratio: 6.859889e-03	ci left: 2.234198e-01	ci right 2.249586e-01	k: 253333	n:1130000
KS ci ratio: 9.619993e-02	ci left: 1.396657e-03	ci right 1.538661e-03	k: 1657	n:1130000
MRPS31   1130000 perm   691 sec   (1636 perm/sec)   p_kst 1.466372e-03   p_cons 2.241885e-01   p_joint 8.106195e-04

Joint ci ratio: 1.288364e-01	ci left: 7.591201e-04	ci right 8.644954e-04	k: 924	n:1140000
Cons ci ratio: 6.829751e-03	ci left: 2.234224e-01	ci right 2.249544e-01	k: 255574	n:1140000
KS ci ratio: 9.585379e-02	ci left: 1.394680e-03	ci right 1.535943e-03	k: 1669	n:1140000
MRPS31   1140000 perm   701 sec   (1626 perm/sec)   p_kst 1.464035e-03   p_cons 2.241877e-01   p_joint 8.105263e-04

Joint ci ratio: 1.282829e-01	ci left: 7.592518e-04	ci right 8.641582e-04	k: 932	n:1150000
Cons ci ratio: 6.799106e-03	ci left: 2.234710e-01	ci right 2.249965e-01	k: 257868	n:1150000
KS ci ratio: 9.553981e-02	ci left: 1.391888e-03	ci right 1.532381e-03	k: 1680	n:1150000
MRPS31   1150000 perm   712 sec   (1616 perm/sec)   p_kst 1.460870e-03   p_cons 2.242330e-01   p_joint 8.104348e-04

Joint ci ratio: 1.278725e-01	ci left: 7.577132e-04	ci right 8.620467e-04	k: 938	n:1160000
Cons ci ratio: 6.769725e-03	ci left: 2.234749e-01	ci right 2.249937e-01	k: 260111	n:1160000
KS ci ratio: 9.525709e-02	ci left: 1.388304e-03	ci right 1.527997e-03	k: 1690	n:1160000
MRPS31   1160000 perm   722 sec   (1606 perm/sec)   p_kst 1.456897e-03   p_cons 2.242336e-01   p_joint 8.086207e-04

Joint ci ratio: 1.275336e-01	ci left: 7.553739e-04	ci right 8.590888e-04	k: 943	n:1170000
Cons ci ratio: 6.740689e-03	ci left: 2.234804e-01	ci right 2.249927e-01	k: 262356	n:1170000
KS ci ratio: 9.494891e-02	ci left: 1.385616e-03	ci right 1.524563e-03	k: 1701	n:1170000
MRPS31   1170000 perm   733 sec   (1597 perm/sec)   p_kst 1.453846e-03   p_cons 2.242359e-01   p_joint 8.059829e-04

Joint ci ratio: 1.269299e-01	ci left: 7.563569e-04	ci right 8.596781e-04	k: 952	n:1180000
Cons ci ratio: 6.712546e-03	ci left: 2.234588e-01	ci right 2.249646e-01	k: 264569	n:1180000
KS ci ratio: 9.442316e-02	ci left: 1.389594e-03	ci right 1.528126e-03	k: 1720	n:1180000
MRPS31   1180000 perm   743 sec   (1588 perm/sec)   p_kst 1.457627e-03   p_cons 2.242110e-01   p_joint 8.067797e-04

Joint ci ratio: 1.264664e-01	ci left: 7.556968e-04	ci right 8.585226e-04	k: 959	n:1190000
Cons ci ratio: 6.682912e-03	ci left: 2.235332e-01	ci right 2.250329e-01	k: 266896	n:1190000
KS ci ratio: 9.401432e-02	ci left: 1.390225e-03	ci right 1.528186e-03	k: 1735	n:1190000
MRPS31   1190000 perm   754 sec   (1578 perm/sec)   p_kst 1.457983e-03   p_cons 2.242824e-01   p_joint 8.058824e-04

Joint ci ratio: 1.258127e-01	ci left: 7.574698e-04	ci right 8.599643e-04	k: 969	n:1200000
Cons ci ratio: 6.655882e-03	ci left: 2.234907e-01	ci right 2.249840e-01	k: 269084	n:1200000
KS ci ratio: 9.353054e-02	ci left: 1.393288e-03	ci right 1.530803e-03	k: 1753	n:1200000
MRPS31   1200000 perm   765 sec   (1569 perm/sec)   p_kst 1.460833e-03   p_cons 2.242367e-01   p_joint 8.075000e-04

Joint ci ratio: 1.252330e-01	ci left: 7.584142e-04	ci right 8.605286e-04	k: 978	n:1210000
Cons ci ratio: 6.627855e-03	ci left: 2.235182e-01	ci right 2.250054e-01	k: 271356	n:1210000
KS ci ratio: 9.315952e-02	ci left: 1.393073e-03	ci right 1.529992e-03	k: 1767	n:1210000
MRPS31   1210000 perm   775 sec   (1560 perm/sec)   p_kst 1.460331e-03   p_cons 2.242612e-01   p_joint 8.082645e-04

Joint ci ratio: 1.244095e-01	ci left: 7.625208e-04	ci right 8.644633e-04	k: 991	n:1220000
Cons ci ratio: 6.600475e-03	ci left: 2.235298e-01	ci right 2.250109e-01	k: 273609	n:1220000
KS ci ratio: 9.261089e-02	ci left: 1.398468e-03	ci right 1.535064e-03	k: 1788	n:1220000
MRPS31   1220000 perm   786 sec   (1552 perm/sec)   p_kst 1.465574e-03   p_cons 2.242697e-01   p_joint 8.122951e-04

Joint ci ratio: 1.240350e-01	ci left: 7.610479e-04	ci right 8.624647e-04	k: 997	n:1230000
Cons ci ratio: 6.574675e-03	ci left: 2.234754e-01	ci right 2.249503e-01	k: 275781	n:1230000
KS ci ratio: 9.222505e-02	ci left: 1.399012e-03	ci right 1.535060e-03	k: 1803	n:1230000
MRPS31   1230000 perm   798 sec   (1542 perm/sec)   p_kst 1.465854e-03   p_cons 2.242122e-01   p_joint 8.105691e-04

Joint ci ratio: 1.235409e-01	ci left: 7.611622e-04	ci right 8.621606e-04	k: 1005	n:1240000
Cons ci ratio: 6.547414e-03	ci left: 2.235153e-01	ci right 2.249844e-01	k: 278069	n:1240000
KS ci ratio: 9.179347e-02	ci left: 1.401124e-03	ci right 1.536706e-03	k: 1820	n:1240000
MRPS31   1240000 perm   809 sec   (1533 perm/sec)   p_kst 1.467742e-03   p_cons 2.242492e-01   p_joint 8.104839e-04

Joint ci ratio: 1.225096e-01	ci left: 7.682546e-04	ci right 8.692815e-04	k: 1022	n:1250000
Cons ci ratio: 6.520385e-03	ci left: 2.235602e-01	ci right 2.250235e-01	k: 280364	n:1250000
KS ci ratio: 9.131815e-02	ci left: 1.404767e-03	ci right 1.539960e-03	k: 1839	n:1250000
MRPS31   1250000 perm   820 sec   (1525 perm/sec)   p_kst 1.471200e-03   p_cons 2.242912e-01   p_joint 8.176000e-04

Joint ci ratio: 1.222710e-01	ci left: 7.652347e-04	ci right 8.656542e-04	k: 1026	n:1260000
Cons ci ratio: 6.495035e-03	ci left: 2.235323e-01	ci right 2.249896e-01	k: 282568	n:1260000
KS ci ratio: 9.107118e-02	ci left: 1.401373e-03	ci right 1.535856e-03	k: 1849	n:1260000
MRPS31   1260000 perm   831 sec   (1516 perm/sec)   p_kst 1.467460e-03   p_cons 2.242603e-01   p_joint 8.142857e-04

Joint ci ratio: 1.217387e-01	ci left: 7.660795e-04	ci right 8.661408e-04	k: 1035	n:1270000
Cons ci ratio: 6.469906e-03	ci left: 2.235087e-01	ci right 2.249603e-01	k: 284777	n:1270000
KS ci ratio: 9.065553e-02	ci left: 1.403421e-03	ci right 1.537452e-03	k: 1866	n:1270000
MRPS31   1270000 perm   842 sec   (1508 perm/sec)   p_kst 1.469291e-03   p_cons 2.242339e-01   p_joint 8.149606e-04

Joint ci ratio: 1.212133e-01	ci left: 7.669122e-04	ci right 8.666189e-04	k: 1044	n:1280000
Cons ci ratio: 6.444256e-03	ci left: 2.235292e-01	ci right 2.249751e-01	k: 287042	n:1280000
KS ci ratio: 9.038977e-02	ci left: 1.400855e-03	ci right 1.534229e-03	k: 1877	n:1280000
MRPS31   1280000 perm   854 sec   (1500 perm/sec)   p_kst 1.466406e-03   p_cons 2.242516e-01   p_joint 8.156250e-04

Joint ci ratio: 1.208094e-01	ci left: 7.662292e-04	ci right 8.654915e-04	k: 1051	n:1290000
Cons ci ratio: 6.418722e-03	ci left: 2.235595e-01	ci right 2.249999e-01	k: 289320	n:1290000
KS ci ratio: 9.010245e-02	ci left: 1.399088e-03	ci right 1.531848e-03	k: 1889	n:1290000
MRPS31   1290000 perm   865 sec   (1491 perm/sec)   p_kst 1.464341e-03   p_cons 2.242791e-01   p_joint 8.147287e-04

Joint ci ratio: 1.201826e-01	ci left: 7.685417e-04	ci right 8.675502e-04	k: 1062	n:1300000
Cons ci ratio: 6.393701e-03	ci left: 2.235778e-01	ci right 2.250126e-01	k: 291583	n:1300000
KS ci ratio: 8.977061e-02	ci left: 1.398853e-03	ci right 1.531076e-03	k: 1903	n:1300000
MRPS31   1300000 perm   877 sec   (1483 perm/sec)   p_kst 1.463846e-03   p_cons 2.242946e-01   p_joint 8.169231e-04

Joint ci ratio: 1.199573e-01	ci left: 7.656366e-04	ci right 8.640729e-04	k: 1066	n:1310000
Cons ci ratio: 6.368594e-03	ci left: 2.236164e-01	ci right 2.250458e-01	k: 293873	n:1310000
KS ci ratio: 8.941906e-02	ci left: 1.399369e-03	ci right 1.531095e-03	k: 1918	n:1310000
MRPS31   1310000 perm   888 sec   (1475 perm/sec)   p_kst 1.464122e-03   p_cons 2.243305e-01   p_joint 8.137405e-04

Joint ci ratio: 1.196216e-01	ci left: 7.642456e-04	ci right 8.622085e-04	k: 1072	n:1320000
Cons ci ratio: 6.345133e-03	ci left: 2.235803e-01	ci right 2.250042e-01	k: 296065	n:1320000
KS ci ratio: 8.923348e-02	ci left: 1.394693e-03	ci right 1.525692e-03	k: 1926	n:1320000
MRPS31   1320000 perm   900 sec   (1467 perm/sec)   p_kst 1.459091e-03   p_cons 2.242917e-01   p_joint 8.121212e-04

Joint ci ratio: 1.195105e-01	ci left: 7.599580e-04	ci right 8.572746e-04	k: 1074	n:1330000
Cons ci ratio: 6.320646e-03	ci left: 2.236154e-01	ci right 2.250340e-01	k: 298351	n:1330000
KS ci ratio: 8.902601e-02	ci left: 1.390822e-03	ci right 1.521139e-03	k: 1935	n:1330000
MRPS31   1330000 perm   912 sec   (1459 perm/sec)   p_kst 1.454887e-03   p_cons 2.243241e-01   p_joint 8.075188e-04

Joint ci ratio: 1.191785e-01	ci left: 7.586306e-04	ci right 8.554883e-04	k: 1080	n:1340000
Cons ci ratio: 6.296535e-03	ci left: 2.236447e-01	ci right 2.250580e-01	k: 300630	n:1340000
KS ci ratio: 8.881998e-02	ci left: 1.387010e-03	ci right 1.516653e-03	k: 1944	n:1340000
MRPS31   1340000 perm   924 sec   (1451 perm/sec)   p_kst 1.450746e-03   p_cons 2.243507e-01   p_joint 8.059701e-04

Joint ci ratio: 1.187399e-01	ci left: 7.587607e-04	ci right 8.552535e-04	k: 1088	n:1350000
Cons ci ratio: 6.273592e-03	ci left: 2.236240e-01	ci right 2.250320e-01	k: 302842	n:1350000
KS ci ratio: 8.850205e-02	ci left: 1.386876e-03	ci right 1.516019e-03	k: 1958	n:1350000
MRPS31   1350000 perm   936 sec   (1443 perm/sec)   p_kst 1.450370e-03   p_cons 2.243274e-01   p_joint 8.059259e-04

Joint ci ratio: 1.184142e-01	ci left: 7.574625e-04	ci right 8.535074e-04	k: 1094	n:1360000
Cons ci ratio: 6.249498e-03	ci left: 2.236814e-01	ci right 2.250844e-01	k: 305160	n:1360000
KS ci ratio: 8.814279e-02	ci left: 1.388183e-03	ci right 1.516896e-03	k: 1974	n:1360000
MRPS31   1360000 perm   948 sec   (1435 perm/sec)   p_kst 1.451471e-03   p_cons 2.243824e-01   p_joint 8.044118e-04

Joint ci ratio: 1.177705e-01	ci left: 7.604340e-04	ci right 8.562951e-04	k: 1106	n:1370000
Cons ci ratio: 6.226763e-03	ci left: 2.236776e-01	ci right 2.250754e-01	k: 307395	n:1370000
KS ci ratio: 8.756791e-02	ci left: 1.396612e-03	ci right 1.525218e-03	k: 2000	n:1370000
MRPS31   1370000 perm   959 sec   (1428 perm/sec)   p_kst 1.459854e-03   p_cons 2.243759e-01   p_joint 8.072993e-04

Joint ci ratio: 1.176115e-01	ci left: 7.570335e-04	ci right 8.523281e-04	k: 1109	n:1380000
Cons ci ratio: 6.204869e-03	ci left: 2.236405e-01	ci right 2.250331e-01	k: 309584	n:1380000
KS ci ratio: 8.741538e-02	ci left: 1.391453e-03	ci right 1.519350e-03	k: 2007	n:1380000
MRPS31   1380000 perm   971 sec   (1421 perm/sec)   p_kst 1.454348e-03   p_cons 2.243362e-01   p_joint 8.036232e-04

Joint ci ratio: 1.172424e-01	ci left: 7.564752e-04	ci right 8.513800e-04	k: 1116	n:1390000
Cons ci ratio: 6.182143e-03	ci left: 2.236636e-01	ci right 2.250513e-01	k: 311856	n:1390000
KS ci ratio: 8.698310e-02	ci left: 1.395517e-03	ci right 1.523121e-03	k: 2027	n:1390000
MRPS31   1390000 perm   983 sec   (1413 perm/sec)   p_kst 1.458273e-03   p_cons 2.243568e-01   p_joint 8.028777e-04

Joint ci ratio: 1.168768e-01	ci left: 7.559254e-04	ci right 8.504451e-04	k: 1123	n:1400000
Cons ci ratio: 6.160841e-03	ci left: 2.236200e-01	ci right 2.250026e-01	k: 314035	n:1400000
KS ci ratio: 8.664195e-02	ci left: 1.396730e-03	ci right 1.523918e-03	k: 2043	n:1400000
MRPS31   1400000 perm   996 sec   (1406 perm/sec)   p_kst 1.459286e-03   p_cons 2.243107e-01   p_joint 8.021429e-04

Joint ci ratio: 1.163603e-01	ci left: 7.574496e-04	ci right 8.517125e-04	k: 1133	n:1410000
Cons ci ratio: 6.137931e-03	ci left: 2.236804e-01	ci right 2.250583e-01	k: 316360	n:1410000
KS ci ratio: 8.624191e-02	ci left: 1.400008e-03	ci right 1.526877e-03	k: 2062	n:1410000
MRPS31   1410000 perm   1008 sec   (1399 perm/sec)   p_kst 1.462411e-03   p_cons 2.243688e-01   p_joint 8.035461e-04

Joint ci ratio: 1.160028e-01	ci left: 7.569018e-04	ci right 8.507873e-04	k: 1140	n:1420000
Cons ci ratio: 6.116759e-03	ci left: 2.236556e-01	ci right 2.250286e-01	k: 318565	n:1420000
KS ci ratio: 8.599225e-02	ci left: 1.398418e-03	ci right 1.524757e-03	k: 2074	n:1420000
MRPS31   1420000 perm   1021 sec   (1391 perm/sec)   p_kst 1.460563e-03   p_cons 2.243415e-01   p_joint 8.028169e-04

Joint ci ratio: 1.154475e-01	ci left: 7.590784e-04	ci right 8.527526e-04	k: 1151	n:1430000
Cons ci ratio: 6.095694e-03	ci left: 2.236375e-01	ci right 2.250056e-01	k: 320779	n:1430000
KS ci ratio: 8.568310e-02	ci left: 1.398903e-03	ci right 1.524809e-03	k: 2089	n:1430000
MRPS31   1430000 perm   1033 sec   (1384 perm/sec)   p_kst 1.460839e-03   p_cons 2.243210e-01   p_joint 8.048951e-04

Joint ci ratio: 1.149992e-01	ci left: 7.598769e-04	ci right 8.532607e-04	k: 1160	n:1440000
Cons ci ratio: 6.075270e-03	ci left: 2.235953e-01	ci right 2.249585e-01	k: 322958	n:1440000
KS ci ratio: 8.523545e-02	ci left: 1.404140e-03	ci right 1.529824e-03	k: 2111	n:1440000
MRPS31   1440000 perm   1046 sec   (1377 perm/sec)   p_kst 1.465972e-03   p_cons 2.242764e-01   p_joint 8.055556e-04

Joint ci ratio: 1.148017e-01	ci left: 7.573157e-04	ci right 8.502141e-04	k: 1164	n:1450000
Cons ci ratio: 6.053898e-03	ci left: 2.236199e-01	ci right 2.249784e-01	k: 325233	n:1450000
KS ci ratio: 8.501445e-02	ci left: 1.401880e-03	ci right 1.527021e-03	k: 2122	n:1450000
MRPS31   1450000 perm   1058 sec   (1370 perm/sec)   p_kst 1.463448e-03   p_cons 2.242986e-01   p_joint 8.027586e-04

Joint ci ratio: 1.143121e-01	ci left: 7.587817e-04	ci right 8.514362e-04	k: 1174	n:1460000
Cons ci ratio: 6.032620e-03	ci left: 2.236517e-01	ci right 2.250056e-01	k: 327519	n:1460000
KS ci ratio: 8.465623e-02	ci left: 1.404346e-03	ci right 1.529152e-03	k: 2140	n:1460000
MRPS31   1460000 perm   1071 sec   (1363 perm/sec)   p_kst 1.465753e-03   p_cons 2.243281e-01   p_joint 8.041096e-04

Joint ci ratio: 1.139249e-01	ci left: 7.589068e-04	ci right 8.512415e-04	k: 1182	n:1470000
Cons ci ratio: 6.011728e-03	ci left: 2.236735e-01	ci right 2.250228e-01	k: 329791	n:1470000
KS ci ratio: 8.432206e-02	ci left: 1.406113e-03	ci right 1.530558e-03	k: 2157	n:1470000
MRPS31   1470000 perm   1084 sec   (1356 perm/sec)   p_kst 1.467347e-03   p_cons 2.243476e-01   p_joint 8.040816e-04

Joint ci ratio: 1.135894e-01	ci left: 7.583741e-04	ci right 8.503542e-04	k: 1189	n:1480000
Cons ci ratio: 5.991145e-03	ci left: 2.236896e-01	ci right 2.250344e-01	k: 332055	n:1480000
KS ci ratio: 8.408866e-02	ci left: 1.404549e-03	ci right 1.528496e-03	k: 2169	n:1480000
MRPS31   1480000 perm   1097 sec   (1349 perm/sec)   p_kst 1.465541e-03   p_cons 2.243615e-01   p_joint 8.033784e-04

Joint ci ratio: 1.131150e-01	ci left: 7.598055e-04	ci right 8.515487e-04	k: 1199	n:1490000
Cons ci ratio: 5.971256e-03	ci left: 2.236774e-01	ci right 2.250177e-01	k: 334277	n:1490000
KS ci ratio: 8.368453e-02	ci left: 1.408921e-03	ci right 1.532627e-03	k: 2190	n:1490000
MRPS31   1490000 perm   1112 sec   (1340 perm/sec)   p_kst 1.469799e-03   p_cons 2.243470e-01   p_joint 8.046980e-04

Joint ci ratio: 1.125535e-01	ci left: 7.625145e-04	ci right 8.540973e-04	k: 1211	n:1500000
Cons ci ratio: 5.950742e-03	ci left: 2.237133e-01	ci right 2.250491e-01	k: 336571	n:1500000
KS ci ratio: 8.330503e-02	ci left: 1.412584e-03	ci right 1.536021e-03	k: 2210	n:1500000
MRPS31   1500000 perm   1133 sec   (1324 perm/sec)   p_kst 1.473333e-03   p_cons 2.243807e-01   p_joint 8.073333e-04

Joint ci ratio: 1.123684e-01	ci left: 7.600391e-04	ci right 8.511646e-04	k: 1215	n:1510000
Cons ci ratio: 5.931026e-03	ci left: 2.237143e-01	ci right 2.250457e-01	k: 338813	n:1510000
KS ci ratio: 8.309868e-02	ci left: 1.410362e-03	ci right 1.533285e-03	k: 2221	n:1510000
MRPS31   1510000 perm   1146 sec   (1318 perm/sec)   p_kst 1.470861e-03   p_cons 2.243795e-01   p_joint 8.046358e-04

Joint ci ratio: 1.120464e-01	ci left: 7.595149e-04	ci right 8.502993e-04	k: 1222	n:1520000
Cons ci ratio: 5.911213e-03	ci left: 2.237324e-01	ci right 2.250595e-01	k: 341081	n:1520000
KS ci ratio: 8.285670e-02	ci left: 1.409458e-03	ci right 1.531928e-03	k: 2234	n:1520000
MRPS31   1520000 perm   1159 sec   (1312 perm/sec)   p_kst 1.469737e-03   p_cons 2.243954e-01   p_joint 8.039474e-04

Joint ci ratio: 1.118182e-01	ci left: 7.577272e-04	ci right 8.481013e-04	k: 1227	n:1530000
Cons ci ratio: 5.891874e-03	ci left: 2.237339e-01	ci right 2.250567e-01	k: 343324	n:1530000
KS ci ratio: 8.272746e-02	ci left: 1.404726e-03	ci right 1.526585e-03	k: 2241	n:1530000
MRPS31   1530000 perm   1172 sec   (1305 perm/sec)   p_kst 1.464706e-03   p_cons 2.243948e-01   p_joint 8.019608e-04

Joint ci ratio: 1.114106e-01	ci left: 7.584879e-04	ci right 8.486013e-04	k: 1236	n:1540000
Cons ci ratio: 5.872111e-03	ci left: 2.237718e-01	ci right 2.250903e-01	k: 345623	n:1540000
KS ci ratio: 8.245209e-02	ci left: 1.405144e-03	ci right 1.526613e-03	k: 2256	n:1540000
MRPS31   1540000 perm   1185 sec   (1299 perm/sec)   p_kst 1.464935e-03   p_cons 2.244305e-01   p_joint 8.025974e-04

Joint ci ratio: 1.111862e-01	ci left: 7.567304e-04	ci right 8.464421e-04	k: 1241	n:1550000
Cons ci ratio: 5.853445e-03	ci left: 2.237557e-01	ci right 2.250699e-01	k: 347839	n:1550000
KS ci ratio: 8.221570e-02	ci left: 1.404293e-03	ci right 1.525324e-03	k: 2269	n:1550000
MRPS31   1550000 perm   1199 sec   (1293 perm/sec)   p_kst 1.463871e-03   p_cons 2.244123e-01   p_joint 8.006452e-04

Joint ci ratio: 1.106087e-01	ci left: 7.599818e-04	ci right 8.495805e-04	k: 1254	n:1560000
Cons ci ratio: 5.834870e-03	ci left: 2.237449e-01	ci right 2.250549e-01	k: 350063	n:1560000
KS ci ratio: 8.183786e-02	ci left: 1.408477e-03	ci right 1.529284e-03	k: 2290	n:1560000
MRPS31   1560000 perm   1213 sec   (1286 perm/sec)   p_kst 1.467949e-03   p_cons 2.243994e-01   p_joint 8.038462e-04

Joint ci ratio: 1.189655e-01	ci left: 6.499634e-04	ci right 7.327882e-04	k: 1084	n:1570000
Cons ci ratio: 5.816183e-03	ci left: 2.237514e-01	ci right 2.250572e-01	k: 352314	n:1570000
KS ci ratio: 8.162444e-02	ci left: 1.406992e-03	ci right 1.527343e-03	k: 2302	n:1570000
MRPS31   1570000 perm   1226 sec   (1280 perm/sec)   p_kst 1.466242e-03   p_cons 2.244038e-01   p_joint 6.904459e-04

Joint ci ratio: 1.099103e-01	ci left: 7.602091e-04	ci right 8.492320e-04	k: 1270	n:1580000
Cons ci ratio: 5.798329e-03	ci left: 2.237187e-01	ci right 2.250203e-01	k: 354503	n:1580000
KS ci ratio: 8.132477e-02	ci left: 1.408628e-03	ci right 1.528655e-03	k: 2319	n:1580000
MRPS31   1580000 perm   1240 sec   (1274 perm/sec)   p_kst 1.467722e-03   p_cons 2.243690e-01   p_joint 8.037975e-04

Joint ci ratio: 1.095660e-01	ci left: 7.603213e-04	ci right 8.490604e-04	k: 1278	n:1590000
Cons ci ratio: 5.780335e-03	ci left: 2.237046e-01	ci right 2.250021e-01	k: 356721	n:1590000
KS ci ratio: 8.108052e-02	ci left: 1.408395e-03	ci right 1.528024e-03	k: 2333	n:1590000
MRPS31   1590000 perm   1254 sec   (1268 perm/sec)   p_kst 1.467296e-03   p_cons 2.243528e-01   p_joint 8.037736e-04

Joint ci ratio: 1.093526e-01	ci left: 7.586087e-04	ci right 8.469644e-04	k: 1283	n:1600000
Cons ci ratio: 5.762052e-03	ci left: 2.237182e-01	ci right 2.250116e-01	k: 358983	n:1600000
KS ci ratio: 8.090750e-02	ci left: 1.405716e-03	ci right 1.524851e-03	k: 2343	n:1600000
MRPS31   1600000 perm   1268 sec   (1262 perm/sec)   p_kst 1.464375e-03   p_cons 2.243644e-01   p_joint 8.018750e-04

Joint ci ratio: 1.088871e-01	ci left: 7.605427e-04	ci right 8.487224e-04	k: 1294	n:1610000
Cons ci ratio: 5.744382e-03	ci left: 2.237049e-01	ci right 2.249942e-01	k: 361202	n:1610000
KS ci ratio: 8.064985e-02	ci left: 1.406113e-03	ci right 1.524884e-03	k: 2358	n:1610000
MRPS31   1610000 perm   1281 sec   (1257 perm/sec)   p_kst 1.464596e-03   p_cons 2.243491e-01   p_joint 8.037267e-04

Joint ci ratio: 1.085940e-01	ci left: 7.600514e-04	ci right 8.479218e-04	k: 1301	n:1620000
Cons ci ratio: 5.727179e-03	ci left: 2.236733e-01	ci right 2.249586e-01	k: 363391	n:1620000
KS ci ratio: 8.044557e-02	ci left: 1.404691e-03	ci right 1.523028e-03	k: 2370	n:1620000
MRPS31   1620000 perm   1295 sec   (1251 perm/sec)   p_kst 1.462963e-03   p_cons 2.243154e-01   p_joint 8.030864e-04

Joint ci ratio: 1.084693e-01	ci left: 7.571790e-04	ci right 8.446104e-04	k: 1304	n:1630000
Cons ci ratio: 5.709142e-03	ci left: 2.237021e-01	ci right 2.249835e-01	k: 365678	n:1630000
KS ci ratio: 8.029346e-02	ci left: 1.401484e-03	ci right 1.519317e-03	k: 2379	n:1630000
MRPS31   1630000 perm   1309 sec   (1245 perm/sec)   p_kst 1.459509e-03   p_cons 2.243423e-01   p_joint 8.000000e-04

Joint ci ratio: 1.081796e-01	ci left: 7.567147e-04	ci right 8.438442e-04	k: 1311	n:1640000
Cons ci ratio: 5.692213e-03	ci left: 2.236734e-01	ci right 2.249508e-01	k: 367871	n:1640000
KS ci ratio: 8.014221e-02	ci left: 1.398316e-03	ci right 1.515651e-03	k: 2388	n:1640000
MRPS31   1640000 perm   1323 sec   (1239 perm/sec)   p_kst 1.456098e-03   p_cons 2.243116e-01   p_joint 7.993902e-04

Joint ci ratio: 1.079741e-01	ci left: 7.550769e-04	ci right 8.418422e-04	k: 1316	n:1650000
Cons ci ratio: 5.674998e-03	ci left: 2.236716e-01	ci right 2.249451e-01	k: 370108	n:1650000
KS ci ratio: 7.997511e-02	ci left: 1.395781e-03	ci right 1.512647e-03	k: 2398	n:1650000
MRPS31   1650000 perm   1338 sec   (1234 perm/sec)   p_kst 1.453333e-03   p_cons 2.243079e-01   p_joint 7.975758e-04

Joint ci ratio: 1.077698e-01	ci left: 7.534590e-04	ci right 8.398642e-04	k: 1321	n:1660000
Cons ci ratio: 5.657370e-03	ci left: 2.237048e-01	ci right 2.249745e-01	k: 372403	n:1660000
KS ci ratio: 7.984226e-02	ci left: 1.392095e-03	ci right 1.508450e-03	k: 2406	n:1660000
MRPS31   1660000 perm   1352 sec   (1228 perm/sec)   p_kst 1.449398e-03   p_cons 2.243392e-01   p_joint 7.957831e-04

Joint ci ratio: 1.076479e-01	ci left: 7.506952e-04	ci right 8.366799e-04	k: 1324	n:1670000
Cons ci ratio: 5.639518e-03	ci left: 2.237615e-01	ci right 2.250275e-01	k: 374738	n:1670000
KS ci ratio: 7.966052e-02	ci left: 1.390215e-03	ci right 1.506136e-03	k: 2417	n:1670000
MRPS31   1670000 perm   1366 sec   (1223 perm/sec)   p_kst 1.447305e-03   p_cons 2.243940e-01   p_joint 7.928144e-04

Joint ci ratio: 1.158071e-01	ci left: 6.420719e-04	ci right 7.215704e-04	k: 1144	n:1680000
Cons ci ratio: 5.621977e-03	ci left: 2.238086e-01	ci right 2.250709e-01	k: 377058	n:1680000
KS ci ratio: 7.946365e-02	ci left: 1.388940e-03	ci right 1.504456e-03	k: 2429	n:1680000
MRPS31   1680000 perm   1380 sec   (1217 perm/sec)   p_kst 1.445833e-03   p_cons 2.244393e-01   p_joint 6.809524e-04

Joint ci ratio: 1.071238e-01	ci left: 7.492969e-04	ci right 8.346773e-04	k: 1337	n:1690000
Cons ci ratio: 5.605886e-03	ci left: 2.237753e-01	ci right 2.250339e-01	k: 379243	n:1690000
KS ci ratio: 7.933332e-02	ci left: 1.385361e-03	ci right 1.500382e-03	k: 2437	n:1690000
MRPS31   1690000 perm   1395 sec   (1211 perm/sec)   p_kst 1.442012e-03   p_cons 2.244041e-01   p_joint 7.911243e-04

Joint ci ratio: 1.069243e-01	ci left: 7.477517e-04	ci right 8.327873e-04	k: 1342	n:1700000
Cons ci ratio: 5.589383e-03	ci left: 2.237766e-01	ci right 2.250314e-01	k: 381486	n:1700000
KS ci ratio: 7.918741e-02	ci left: 1.382401e-03	ci right 1.496955e-03	k: 2446	n:1700000
MRPS31   1700000 perm   1410 sec   (1206 perm/sec)   p_kst 1.438824e-03   p_cons 2.244035e-01   p_joint 7.894118e-04

Joint ci ratio: 1.066072e-01	ci left: 7.479323e-04	ci right 8.327204e-04	k: 1350	n:1710000
Cons ci ratio: 5.573176e-03	ci left: 2.237685e-01	ci right 2.250196e-01	k: 383713	n:1710000
KS ci ratio: 7.902621e-02	ci left: 1.380049e-03	ci right 1.494165e-03	k: 2456	n:1710000
MRPS31   1710000 perm   1424 sec   (1200 perm/sec)   p_kst 1.436257e-03   p_cons 2.243936e-01   p_joint 7.894737e-04

Joint ci ratio: 1.061758e-01	ci left: 7.498091e-04	ci right 8.344445e-04	k: 1361	n:1720000
Cons ci ratio: 5.556848e-03	ci left: 2.237767e-01	ci right 2.250242e-01	k: 385968	n:1720000
KS ci ratio: 7.875416e-02	ci left: 1.381715e-03	ci right 1.495556e-03	k: 2473	n:1720000
MRPS31   1720000 perm   1440 sec   (1195 perm/sec)   p_kst 1.437791e-03   p_cons 2.244000e-01   p_joint 7.912791e-04

Joint ci ratio: 1.058267e-01	ci left: 7.505394e-04	ci right 8.349613e-04	k: 1370	n:1730000
Cons ci ratio: 5.540332e-03	ci left: 2.238057e-01	ci right 2.250496e-01	k: 388259	n:1730000
KS ci ratio: 7.853229e-02	ci left: 1.381661e-03	ci right 1.495163e-03	k: 2487	n:1730000
MRPS31   1730000 perm   1455 sec   (1189 perm/sec)   p_kst 1.437572e-03   p_cons 2.244272e-01   p_joint 7.919075e-04

Joint ci ratio: 1.054810e-01	ci left: 7.512617e-04	ci right 8.354717e-04	k: 1379	n:1740000
Cons ci ratio: 5.523844e-03	ci left: 2.238417e-01	ci right 2.250822e-01	k: 390563	n:1740000
KS ci ratio: 7.824966e-02	ci left: 1.383863e-03	ci right 1.497118e-03	k: 2505	n:1740000
MRPS31   1740000 perm   1469 sec   (1184 perm/sec)   p_kst 1.439655e-03   p_cons 2.244615e-01   p_joint 7.925287e-04

Joint ci ratio: 1.052525e-01	ci left: 7.503069e-04	ci right 8.342164e-04	k: 1385	n:1750000
Cons ci ratio: 5.508388e-03	ci left: 2.238215e-01	ci right 2.250583e-01	k: 392769	n:1750000
KS ci ratio: 7.806303e-02	ci left: 1.382678e-03	ci right 1.495554e-03	k: 2517	n:1750000
MRPS31   1750000 perm   1484 sec   (1179 perm/sec)   p_kst 1.438286e-03   p_cons 2.244394e-01   p_joint 7.914286e-04

Joint ci ratio: 1.047247e-01	ci left: 7.537896e-04	ci right 8.376398e-04	k: 1399	n:1760000
Cons ci ratio: 5.492407e-03	ci left: 2.238429e-01	ci right 2.250762e-01	k: 395048	n:1760000
KS ci ratio: 7.780078e-02	ci left: 1.384293e-03	ci right 1.496904e-03	k: 2534	n:1760000
MRPS31   1760000 perm   1499 sec   (1174 perm/sec)   p_kst 1.439773e-03   p_cons 2.244591e-01   p_joint 7.948864e-04

Joint ci ratio: 1.043897e-01	ci left: 7.544827e-04	ci right 8.381251e-04	k: 1408	n:1770000
Cons ci ratio: 5.476813e-03	ci left: 2.238482e-01	ci right 2.250781e-01	k: 397299	n:1770000
KS ci ratio: 7.754116e-02	ci left: 1.385890e-03	ci right 1.498237e-03	k: 2551	n:1770000
MRPS31   1770000 perm   1514 sec   (1169 perm/sec)   p_kst 1.441243e-03   p_cons 2.244627e-01   p_joint 7.954802e-04

Joint ci ratio: 1.039478e-01	ci left: 7.568100e-04	ci right 8.403336e-04	k: 1420	n:1780000
Cons ci ratio: 5.461377e-03	ci left: 2.238518e-01	ci right 2.250783e-01	k: 399547	n:1780000
KS ci ratio: 7.720891e-02	ci left: 1.390225e-03	ci right 1.502419e-03	k: 2573	n:1780000
MRPS31   1780000 perm   1529 sec   (1164 perm/sec)   p_kst 1.445506e-03   p_cons 2.244646e-01   p_joint 7.977528e-04

Joint ci ratio: 1.036202e-01	ci left: 7.574794e-04	ci right 8.407974e-04	k: 1429	n:1790000
Cons ci ratio: 5.446482e-03	ci left: 2.238292e-01	ci right 2.250521e-01	k: 401748	n:1790000
KS ci ratio: 7.688090e-02	ci left: 1.394512e-03	ci right 1.506553e-03	k: 2595	n:1790000
MRPS31   1790000 perm   1544 sec   (1159 perm/sec)   p_kst 1.449721e-03   p_cons 2.244402e-01   p_joint 7.983240e-04

Joint ci ratio: 1.031880e-01	ci left: 7.597655e-04	ci right 8.429652e-04	k: 1441	n:1800000
Cons ci ratio: 5.430790e-03	ci left: 2.238656e-01	ci right 2.250852e-01	k: 404055	n:1800000
KS ci ratio: 7.655703e-02	ci left: 1.398752e-03	ci right 1.510639e-03	k: 2617	n:1800000
MRPS31   1800000 perm   1560 sec   (1154 perm/sec)   p_kst 1.453889e-03   p_cons 2.244750e-01   p_joint 8.005556e-04

Joint ci ratio: 1.029030e-01	ci left: 7.598739e-04	ci right 8.428417e-04	k: 1449	n:1810000
Cons ci ratio: 5.415610e-03	ci left: 2.238774e-01	ci right 2.250937e-01	k: 406318	n:1810000
KS ci ratio: 7.636769e-02	ci left: 1.398069e-03	ci right 1.509613e-03	k: 2630	n:1810000
MRPS31   1810000 perm   1575 sec   (1149 perm/sec)   p_kst 1.453039e-03   p_cons 2.244851e-01   p_joint 8.005525e-04

Joint ci ratio: 1.026555e-01	ci left: 7.594461e-04	ci right 8.421557e-04	k: 1456	n:1820000
Cons ci ratio: 5.400574e-03	ci left: 2.238879e-01	ci right 2.251009e-01	k: 408579	n:1820000
KS ci ratio: 7.617975e-02	ci left: 1.397394e-03	ci right 1.508597e-03	k: 2643	n:1820000
MRPS31   1820000 perm   1591 sec   (1144 perm/sec)   p_kst 1.452198e-03   p_cons 2.244940e-01   p_joint 8.000000e-04

Joint ci ratio: 1.023399e-01	ci left: 7.600880e-04	ci right 8.425978e-04	k: 1465	n:1830000
Cons ci ratio: 5.386271e-03	ci left: 2.238591e-01	ci right 2.250686e-01	k: 410768	n:1830000
KS ci ratio: 7.599319e-02	ci left: 1.396727e-03	ci right 1.507593e-03	k: 2656	n:1830000
MRPS31   1830000 perm   1606 sec   (1139 perm/sec)   p_kst 1.451366e-03   p_cons 2.244634e-01   p_joint 8.005464e-04

Joint ci ratio: 1.020272e-01	ci left: 7.607234e-04	ci right 8.430347e-04	k: 1474	n:1840000
Cons ci ratio: 5.371259e-03	ci left: 2.238837e-01	ci right 2.250900e-01	k: 413055	n:1840000
KS ci ratio: 7.573701e-02	ci left: 1.398733e-03	ci right 1.509367e-03	k: 2674	n:1840000
MRPS31   1840000 perm   1622 sec   (1135 perm/sec)   p_kst 1.453261e-03   p_cons 2.244864e-01   p_joint 8.010870e-04

Joint ci ratio: 1.017859e-01	ci left: 7.602988e-04	ci right 8.423580e-04	k: 1481	n:1850000
Cons ci ratio: 5.356730e-03	ci left: 2.238849e-01	ci right 2.250879e-01	k: 415299	n:1850000
KS ci ratio: 7.552554e-02	ci left: 1.399127e-03	ci right 1.509470e-03	k: 2689	n:1850000
MRPS31   1850000 perm   1637 sec   (1130 perm/sec)   p_kst 1.453514e-03   p_cons 2.244859e-01   p_joint 8.005405e-04

Joint ci ratio: 1.014783e-01	ci left: 7.609269e-04	ci right 8.427908e-04	k: 1490	n:1860000
Cons ci ratio: 5.342318e-03	ci left: 2.238860e-01	ci right 2.250858e-01	k: 417543	n:1860000
KS ci ratio: 7.526013e-02	ci left: 1.401627e-03	ci right 1.511762e-03	k: 2708	n:1860000
MRPS31   1860000 perm   1653 sec   (1125 perm/sec)   p_kst 1.455914e-03   p_cons 2.244855e-01   p_joint 8.010753e-04

Joint ci ratio: 1.010386e-01	ci left: 7.636336e-04	ci right 8.454117e-04	k: 1503	n:1870000
Cons ci ratio: 5.327882e-03	ci left: 2.238962e-01	ci right 2.250928e-01	k: 419804	n:1870000
KS ci ratio: 7.501126e-02	ci left: 1.403577e-03	ci right 1.513484e-03	k: 2726	n:1870000
MRPS31   1870000 perm   1668 sec   (1121 perm/sec)   p_kst 1.457754e-03   p_cons 2.244941e-01   p_joint 8.037433e-04

Joint ci ratio: 1.008043e-01	ci left: 7.632012e-04	ci right 8.447322e-04	k: 1510	n:1880000
Cons ci ratio: 5.313985e-03	ci left: 2.238787e-01	ci right 2.250721e-01	k: 422013	n:1880000
KS ci ratio: 7.480580e-02	ci left: 1.403940e-03	ci right 1.513562e-03	k: 2741	n:1880000
MRPS31   1880000 perm   1684 sec   (1116 perm/sec)   p_kst 1.457979e-03   p_cons 2.244750e-01   p_joint 8.031915e-04

Joint ci ratio: 1.003733e-01	ci left: 7.658684e-04	ci right 8.473140e-04	k: 1523	n:1890000
Cons ci ratio: 5.299850e-03	ci left: 2.238842e-01	ci right 2.250744e-01	k: 424265	n:1890000
KS ci ratio: 7.457493e-02	ci left: 1.405339e-03	ci right 1.514716e-03	k: 2758	n:1890000
MRPS31   1890000 perm   1701 sec   (1111 perm/sec)   p_kst 1.459259e-03   p_cons 2.244788e-01   p_joint 8.058201e-04

Joint ci ratio: 1.000782e-01	ci left: 7.664556e-04	ci right 8.477099e-04	k: 1532	n:1900000
Cons ci ratio: 5.285899e-03	ci left: 2.238848e-01	ci right 2.250719e-01	k: 426508	n:1900000
KS ci ratio: 7.435961e-02	ci left: 1.406207e-03	ci right 1.515322e-03	k: 2774	n:1900000
MRPS31   1900000 perm   1717 sec   (1106 perm/sec)   p_kst 1.460000e-03   p_cons 2.244779e-01   p_joint 8.063158e-04

Joint ci ratio: 9.991550e-02	ci left: 7.649951e-04	ci right 8.459550e-04	k: 1537	n:1910000
Cons ci ratio: 5.272169e-03	ci left: 2.238781e-01	ci right 2.250620e-01	k: 428737	n:1910000
KS ci ratio: 7.423942e-02	ci left: 1.403469e-03	ci right 1.512188e-03	k: 2783	n:1910000
MRPS31   1910000 perm   1733 sec   (1102 perm/sec)   p_kst 1.457068e-03   p_cons 2.244696e-01   p_joint 8.047120e-04

Outputting figure to mutsig2_images.part000000000108/MRPS31.2_1216_1910000_0.0014571_0.22447_0.00080471.png
                gene_name: MRPS31
               theta_stop: 0.100 
                    nperm: 1910000 
                     p_ks: 0.0015 
        ci_ks_bounds_left: 0.0014 
       ci_ks_bounds_right: 0.0015 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.00080 
     ci_joint_bounds_left: 0.00076 
    ci_joint_bounds_right: 0.00085 

Current progress: 83 percent done.
MRPS36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.325116e-02	ci left: 2.686408e-01	ci right 2.862890e-01	k: 2774	n:10000
Cons ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
KS ci ratio: 6.675939e-03	ci left: 9.684703e-01	ci right 9.750510e-01	k: 9719	n:10000
MRPS36   10000 perm   1 sec   (6848 perm/sec)   p_kst 9.719000e-01   p_cons 6.190000e-02   p_joint 2.774000e-01

Joint ci ratio: 5.282331e-02	ci left: 2.101649e-01	ci right 2.216179e-01	k: 4317	n:20000
Cons ci ratio: 1.097109e-01	ci left: 5.669910e-02	ci right 6.332954e-02	k: 1199	n:20000
KS ci ratio: 4.664911e-03	ci left: 9.701387e-01	ci right 9.747225e-01	k: 19450	n:20000
MRPS36   20000 perm   3 sec   (5991 perm/sec)   p_kst 9.725000e-01   p_cons 5.995000e-02   p_joint 2.158500e-01

Joint ci ratio: 6.481744e-02	ci left: 1.051334e-01	ci right 1.122092e-01	k: 3259	n:30000
Cons ci ratio: 9.032902e-02	ci left: 5.639247e-02	ci right 6.175999e-02	k: 1771	n:30000
KS ci ratio: 3.788855e-03	ci left: 9.708618e-01	ci right 9.745792e-01	k: 29183	n:30000
MRPS36   30000 perm   5 sec   (5698 perm/sec)   p_kst 9.727667e-01   p_cons 5.903333e-02   p_joint 1.086333e-01

Outputting figure to mutsig2_images.part000000000108/MRPS36.2_328_30000_0.97277_0.059033_0.10863.png
                gene_name: MRPS36
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 86 percent done.
MRPS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.756597e-02	ci left: 3.075869e-01	ci right 3.259199e-01	k: 3167	n:10000
Cons ci ratio: 2.310842e-02	ci left: 7.334059e-01	ci right 7.506529e-01	k: 7421	n:10000
KS ci ratio: 7.714643e-02	ci left: 1.972229e-01	ci right 2.131492e-01	k: 2051	n:10000
MRPS9   10000 perm   2 sec   (6438 perm/sec)   p_kst 2.051000e-01   p_cons 7.421000e-01   p_joint 3.167000e-01

Outputting figure to mutsig2_images.part000000000108/MRPS9.2_1235_10000_0.2051_0.7421_0.3167.png
                gene_name: MRPS9
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 88 percent done.
MRS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.618013e-02	ci left: 4.090055e-01	ci right 4.284419e-01	k: 4187	n:10000
Cons ci ratio: 6.784099e-02	ci left: 2.417346e-01	ci right 2.588111e-01	k: 2502	n:10000
KS ci ratio: 8.742056e-02	ci left: 1.600322e-01	ci right 1.747621e-01	k: 1673	n:10000
MRS2   10000 perm   2 sec   (6213 perm/sec)   p_kst 1.673000e-01   p_cons 2.502000e-01   p_joint 4.187000e-01

Outputting figure to mutsig2_images.part000000000108/MRS2.2_1376_10000_0.1673_0.2502_0.4187.png
                gene_name: MRS2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 90 percent done.
MS4A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.029893e-02	ci left: 9.305074e-01	ci right 9.402371e-01	k: 9355	n:10000
Cons ci ratio: 6.663364e-02	ci left: 2.484571e-01	ci right 2.656846e-01	k: 2570	n:10000
KS ci ratio: 7.926439e-03	ci left: 9.568097e-01	ci right 9.645190e-01	k: 9608	n:10000
MS4A12   10000 perm   1 sec   (6751 perm/sec)   p_kst 9.608000e-01   p_cons 2.570000e-01   p_joint 9.355000e-01

Outputting figure to mutsig2_images.part000000000108/MS4A12.2_828_10000_0.9608_0.257_0.9355.png
                gene_name: MS4A12
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 93 percent done.
MS4A4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.924448e-02	ci left: 6.329156e-01	ci right 6.518014e-01	k: 6424	n:10000
Cons ci ratio: 3.370417e-02	ci left: 5.651401e-01	ci right 5.846162e-01	k: 5749	n:10000
KS ci ratio: 7.033410e-02	ci left: 2.285942e-01	ci right 2.453593e-01	k: 2369	n:10000
MS4A4A   10000 perm   1 sec   (6675 perm/sec)   p_kst 2.369000e-01   p_cons 5.749000e-01   p_joint 6.424000e-01

Outputting figure to mutsig2_images.part000000000108/MS4A4A.2_748_10000_0.2369_0.5749_0.6424.png
                gene_name: MS4A4A
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 95 percent done.
MS4A8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.550139e-01	ci left: 5.542402e-02	ci right 6.483425e-02	k: 600	n:10000
Cons ci ratio: 4.779148e-02	ci left: 3.924695e-01	ci right 4.117875e-01	k: 4021	n:10000
KS ci ratio: 1.703240e-01	ci left: 4.600180e-02	ci right 5.466254e-02	k: 502	n:10000
MS4A8B   10000 perm   1 sec   (6856 perm/sec)   p_kst 5.020000e-02   p_cons 4.021000e-01   p_joint 6.000000e-02

Joint ci ratio: 9.620311e-02	ci left: 7.295085e-02	ci right 8.037278e-02	k: 1532	n:20000
Cons ci ratio: 3.407967e-02	ci left: 3.913061e-01	ci right 4.049235e-01	k: 7962	n:20000
KS ci ratio: 1.192588e-01	ci left: 4.818582e-02	ci right 5.434548e-02	k: 1024	n:20000
MS4A8B   20000 perm   3 sec   (6135 perm/sec)   p_kst 5.120000e-02   p_cons 3.981000e-01   p_joint 7.660000e-02

Joint ci ratio: 7.502853e-02	ci left: 8.026234e-02	ci right 8.655194e-02	k: 2501	n:30000
Cons ci ratio: 2.768220e-02	ci left: 3.950482e-01	ci right 4.061711e-01	k: 12018	n:30000
KS ci ratio: 9.722523e-02	ci left: 4.889563e-02	ci right 5.392503e-02	k: 1541	n:30000
MS4A8B   30000 perm   5 sec   (5846 perm/sec)   p_kst 5.136667e-02   p_cons 4.006000e-01   p_joint 8.336667e-02

Outputting figure to mutsig2_images.part000000000108/MS4A8B.2_777_30000_0.051367_0.4006_0.083367.png
                gene_name: MS4A8B
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.087 

Current progress: 98 percent done.
MSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.860936e-02	ci left: 8.083654e-01	ci right 8.236501e-01	k: 8161	n:10000
Cons ci ratio: 1.833676e-01	ci left: 3.968114e-02	ci right 4.778736e-02	k: 436	n:10000
KS ci ratio: 1.261589e-02	ci left: 9.003168e-01	ci right 9.118454e-01	k: 9062	n:10000
MSL1   10000 perm   2 sec   (6519 perm/sec)   p_kst 9.062000e-01   p_cons 4.360000e-02   p_joint 8.161000e-01

Joint ci ratio: 1.788459e-02	ci left: 6.996816e-01	ci right 7.123584e-01	k: 14121	n:20000
Cons ci ratio: 1.310014e-01	ci left: 4.003650e-02	ci right 4.569738e-02	k: 856	n:20000
KS ci ratio: 8.885191e-03	ci left: 9.027376e-01	ci right 9.108437e-01	k: 18137	n:20000
MSL1   20000 perm   3 sec   (5782 perm/sec)   p_kst 9.068500e-01   p_cons 4.280000e-02   p_joint 7.060500e-01

Joint ci ratio: 4.588126e-02	ci left: 1.911905e-01	ci right 2.002019e-01	k: 5870	n:30000
Cons ci ratio: 1.068978e-01	ci left: 4.060227e-02	ci right 4.522012e-02	k: 1286	n:30000
KS ci ratio: 7.237861e-03	ci left: 9.038943e-01	ci right 9.104932e-01	k: 27217	n:30000
MSL1   30000 perm   5 sec   (5512 perm/sec)   p_kst 9.072333e-01   p_cons 4.286667e-02   p_joint 1.956667e-01

Joint ci ratio: 3.948997e-02	ci left: 1.937322e-01	ci right 2.015618e-01	k: 7905	n:40000
Cons ci ratio: 9.277446e-02	ci left: 4.073943e-02	ci right 4.472729e-02	k: 1708	n:40000
KS ci ratio: 6.277610e-03	ci left: 9.040863e-01	ci right 9.098044e-01	k: 36279	n:40000
MSL1   40000 perm   7 sec   (5334 perm/sec)   p_kst 9.069750e-01   p_cons 4.270000e-02   p_joint 1.976250e-01

Outputting figure to mutsig2_images.part000000000108/MSL1.2_1088_40000_0.90697_0.0427_0.19762.png
                gene_name: MSL1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000108
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 108 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1551>
Subject: Job 9894021: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1551>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000109> was used as the working directory.
Started at Sat Oct  6 00:19:23 2012
Results reported at Sat Oct  6 00:30:53 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000109.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000109.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 109  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000109.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    773.97 sec.
    Max Memory :      3652 MB
    Max Swap   :      6002 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
109
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 109
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 109: processing genes 9737 - 9826
Calculating significance of each gene.
Using projection method.
9737	MSL3	6.589190e-01
9738	MSLN	1
9739	MSLNL	1
9740	MSMB	1
9741	MSMP	1
9742	MSN	6.544828e-02
9743	MSR1	2.376423e-01
9744	MSRA	1
9745	MSRB2	2.454652e-01
9746	MSRB3	2.639843e-03
9747	MST1	9.393399e-01
9748	MST1R	9.990040e-01
9749	MST4	8.205881e-01
9750	MSTN	8.283204e-01
9751	MSTO1	1
9752	MSX1	1
9753	MSX2	5.104777e-01
9754	MT1A	1
9755	MT1B	2.933714e-01
9756	MT1E	1
9757	MT1F	1
9758	MT1G	1.317387e-01
9759	MT1H	1
9760	MT1M	1
9761	MT1X	1
9762	MT2A	1
9763	MT3	2.436307e-01
9764	MT4	1
9765	MTA1	9.119286e-01
9766	MTA2	2.313549e-01
9767	MTA3	9.348892e-01
9768	MTAP	8.051254e-01
9769	MTBP	5.698174e-01
9770	MTCH1	5.689328e-01
9771	MTCH2	8.110127e-01
9772	MTCP1	4.238911e-01
9773	MTCP1NB	1
9774	MTDH	3.624085e-01
9775	MTERF	6.180165e-01
9776	MTERFD1	1.291553e-01
9777	MTERFD2	2.123281e-01
9778	MTERFD3	8.023170e-01
9779	MTF1	2.717818e-01
9780	MTF2	6.323832e-01
9781	MTFMT	5.377372e-01
9782	MTFR1	9.214509e-03
9783	MTG1	6.374896e-02
9784	MTHFD1	4.979388e-01
9785	MTHFD1L	3.362526e-01
9786	MTHFD2	1
9787	MTHFD2L	1
9788	MTHFR	3.588137e-01
9789	MTHFS	3.036721e-01
9790	MTHFSD	3.705309e-01
9791	MTIF2	4.464447e-01
9792	MTIF3	1
9793	MTL5	5.092118e-01
9794	MTM1	3.541166e-01
9795	MTMR1	2.465208e-01
9796	MTMR10	3.854665e-01
9797	MTMR11	5.523825e-01
9798	MTMR12	1.555254e-01
9799	MTMR14	1
9800	MTMR15	9.859240e-01
9801	MTMR2	7.840413e-01
9802	MTMR3	8.487428e-01
9803	MTMR4	8.783355e-01
9804	MTMR6	1.842084e-01
9805	MTMR7	3.213995e-01
9806	MTMR8	3.508901e-01
9807	MTMR9	7.828775e-01
9808	MTNR1A	1
9809	MTNR1B	6.666567e-01
9810	MTO1	8.858625e-01
9811	MTOR	1.279774e-01
9812	MTP18	1
9813	MTPAP	6.716434e-02
9814	MTPN	1
9815	MTR	3.616913e-01
9816	MTRF1	3.061517e-01
9817	MTRF1L	7.596384e-01
9818	MTRR	8.063231e-01
9819	MTSS1	7.559785e-01
9820	MTSS1L	1
9821	MTTP	6.298495e-03
9822	MTUS1	6.430318e-01
9823	MTUS2	5.152779e-01
9824	MTX1	5.602296e-01
9825	MTX2	6.186558e-01
9826	MTX3	2.241956e-01
Done

Running MutSig 2:
Scatter job 109: processing genes 9737 - 9826
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MTOR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.434149e-02	ci left: 7.128025e-01	ci right 7.304682e-01	k: 7217	n:10000
Cons ci ratio: 5.451871e-02	ci left: 3.314084e-01	ci right 3.500845e-01	k: 3407	n:10000
KS ci ratio: 2.714277e-02	ci left: 6.666264e-01	ci right 6.850711e-01	k: 6759	n:10000
MTOR   10000 perm   4 sec   (2797 perm/sec)   p_kst 6.759000e-01   p_cons 3.407000e-01   p_joint 7.217000e-01

Outputting figure to mutsig2_images.part000000000109/MTOR.16_7878_10000_0.6759_0.3407_0.7217.png
                gene_name: MTOR
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 2 percent done.
MTTP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.435360e-02	ci left: 7.126006e-01	ci right 7.302702e-01	k: 7215	n:10000
KS ci ratio: 1.931867e-02	ci left: 7.966903e-01	ci right 8.123319e-01	k: 8046	n:10000
MTTP   10000 perm   2 sec   (4284 perm/sec)   p_kst 8.046000e-01   p_cons 7.215000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTTP.12_2757_10000_0.8046_0.7215_1.png
                gene_name: MTTP
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
MTUS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.347477e-03	ci left: 9.525257e-01	ci right 9.606056e-01	k: 9567	n:10000
Cons ci ratio: 2.249902e-02	ci left: 7.436154e-01	ci right 7.606374e-01	k: 7522	n:10000
KS ci ratio: 1.749028e-02	ci left: 8.265603e-01	ci right 8.412446e-01	k: 8340	n:10000
MTUS2   10000 perm   2 sec   (4109 perm/sec)   p_kst 8.340000e-01   p_cons 7.522000e-01   p_joint 9.567000e-01

Outputting figure to mutsig2_images.part000000000109/MTUS2.12_4254_10000_0.834_0.7522_0.9567.png
                gene_name: MTUS2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 7 percent done.
MTUS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.240721e-02	ci left: 9.031932e-01	ci right 9.145673e-01	k: 9090	n:10000
Cons ci ratio: 2.369416e-02	ci left: 7.236062e-01	ci right 7.410582e-01	k: 7324	n:10000
KS ci ratio: 2.358540e-02	ci left: 7.254243e-01	ci right 7.428391e-01	k: 7342	n:10000
MTUS1   10000 perm   3 sec   (3822 perm/sec)   p_kst 7.342000e-01   p_cons 7.324000e-01   p_joint 9.090000e-01

Outputting figure to mutsig2_images.part000000000109/MTUS1.11_4188_10000_0.7342_0.7324_0.909.png
                gene_name: MTUS1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 9 percent done.
MTHFD1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.031447e-01	ci left: 1.196532e-01	ci right 1.327654e-01	k: 1261	n:10000
Cons ci ratio: 1.305483e-01	ci left: 7.727681e-02	ci right 8.816773e-02	k: 826	n:10000
KS ci ratio: 1.098228e-01	ci left: 1.067607e-01	ci right 1.192658e-01	k: 1129	n:10000
MTHFD1L   10000 perm   2 sec   (4446 perm/sec)   p_kst 1.129000e-01   p_cons 8.260000e-02   p_joint 1.261000e-01

Joint ci ratio: 9.108822e-02	ci left: 8.087673e-02	ci right 8.864449e-02	k: 1694	n:20000
Cons ci ratio: 9.062170e-02	ci left: 8.166013e-02	ci right 8.946085e-02	k: 1710	n:20000
KS ci ratio: 7.769665e-02	ci left: 1.084964e-01	ci right 1.173165e-01	k: 2257	n:20000
MTHFD1L   20000 perm   5 sec   (4023 perm/sec)   p_kst 1.128500e-01   p_cons 8.550000e-02   p_joint 8.470000e-02

Outputting figure to mutsig2_images.part000000000109/MTHFD1L.8_3045_20000_0.11285_0.0855_0.0847.png
                gene_name: MTHFD1L
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.089 

Current progress: 11 percent done.
MTHFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.218371e-01	ci left: 8.805737e-02	ci right 9.958050e-02	k: 937	n:10000
Cons ci ratio: 3.946939e-02	ci left: 4.866526e-01	ci right 5.063494e-01	k: 4965	n:10000
KS ci ratio: 1.717671e-01	ci left: 4.523448e-02	ci right 5.383036e-02	k: 494	n:10000
MTHFR   10000 perm   2 sec   (5022 perm/sec)   p_kst 4.940000e-02   p_cons 4.965000e-01   p_joint 9.370000e-02

Joint ci ratio: 1.082782e-01	ci left: 5.816063e-02	ci right 6.486755e-02	k: 1229	n:20000
Cons ci ratio: 2.790282e-02	ci left: 4.896965e-01	ci right 5.036044e-01	k: 9933	n:20000
KS ci ratio: 1.219146e-01	ci left: 4.614611e-02	ci right 5.218582e-02	k: 982	n:20000
MTHFR   20000 perm   4 sec   (4459 perm/sec)   p_kst 4.910000e-02   p_cons 4.966500e-01   p_joint 6.145000e-02

Joint ci ratio: 7.052443e-02	ci left: 9.006439e-02	ci right 9.668127e-02	k: 2800	n:30000
Cons ci ratio: 2.290267e-02	ci left: 4.883599e-01	ci right 4.997079e-01	k: 14821	n:30000
KS ci ratio: 9.938418e-02	ci left: 4.684472e-02	ci right 5.177636e-02	k: 1478	n:30000
MTHFR   30000 perm   7 sec   (4240 perm/sec)   p_kst 4.926667e-02   p_cons 4.940333e-01   p_joint 9.333333e-02

Outputting figure to mutsig2_images.part000000000109/MTHFR.7_2015_30000_0.049267_0.49403_0.093333.png
                gene_name: MTHFR
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.097 

Current progress: 13 percent done.
MTMR12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.318649e-02	ci left: 1.740876e-01	ci right 1.892983e-01	k: 1816	n:10000
Cons ci ratio: 1.083156e-01	ci left: 1.094933e-01	ci right 1.221314e-01	k: 1157	n:10000
KS ci ratio: 6.712558e-02	ci left: 2.456887e-01	ci right 2.628547e-01	k: 2542	n:10000
MTMR12   10000 perm   2 sec   (5111 perm/sec)   p_kst 2.542000e-01   p_cons 1.157000e-01   p_joint 1.816000e-01

Joint ci ratio: 6.789724e-02	ci left: 1.379783e-01	ci right 1.477258e-01	k: 2856	n:20000
Cons ci ratio: 7.708228e-02	ci left: 1.100691e-01	ci right 1.189433e-01	k: 2289	n:20000
KS ci ratio: 4.802881e-02	ci left: 2.438122e-01	ci right 2.558606e-01	k: 4996	n:20000
MTMR12   20000 perm   4 sec   (4561 perm/sec)   p_kst 2.498000e-01   p_cons 1.144500e-01   p_joint 1.428000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR12.7_2308_20000_0.2498_0.11445_0.1428.png
                gene_name: MTMR12
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 15 percent done.
MTMR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.217922e-02	ci left: 7.489754e-01	ci right 7.658744e-01	k: 7575	n:10000
Cons ci ratio: 2.121254e-02	ci left: 7.651672e-01	ci right 7.816732e-01	k: 7735	n:10000
KS ci ratio: 3.140657e-02	ci left: 5.993553e-01	ci right 6.185812e-01	k: 6090	n:10000
MTMR8   10000 perm   2 sec   (5064 perm/sec)   p_kst 6.090000e-01   p_cons 7.735000e-01   p_joint 7.575000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR8.7_2171_10000_0.609_0.7735_0.7575.png
                gene_name: MTMR8
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 17 percent done.
MTPAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.117267e-01	ci left: 1.034441e-01	ci right 1.157844e-01	k: 1095	n:10000
Cons ci ratio: 3.071847e-02	ci left: 6.099005e-01	ci right 6.290299e-01	k: 6195	n:10000
KS ci ratio: 1.318562e-01	ci left: 7.582209e-02	ci right 8.662335e-02	k: 811	n:10000
MTPAP   10000 perm   2 sec   (5105 perm/sec)   p_kst 8.110000e-02   p_cons 6.195000e-01   p_joint 1.095000e-01

Joint ci ratio: 7.549048e-02	ci left: 1.142973e-01	ci right 1.233138e-01	k: 2375	n:20000
Cons ci ratio: 2.180764e-02	ci left: 6.108733e-01	ci right 6.243925e-01	k: 12353	n:20000
KS ci ratio: 9.222233e-02	ci left: 7.901657e-02	ci right 8.670521e-02	k: 1656	n:20000
MTPAP   20000 perm   4 sec   (4564 perm/sec)   p_kst 8.280000e-02   p_cons 6.176500e-01   p_joint 1.187500e-01

Outputting figure to mutsig2_images.part000000000109/MTPAP.7_1785_20000_0.0828_0.61765_0.11875.png
                gene_name: MTPAP
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 20 percent done.
MTR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.338807e-02	ci left: 5.697529e-01	ci right 5.892008e-01	k: 5795	n:10000
Cons ci ratio: 5.158221e-02	ci left: 3.565488e-01	ci right 3.755293e-01	k: 3660	n:10000
KS ci ratio: 3.725154e-02	ci left: 5.155566e-01	ci right 5.352286e-01	k: 5254	n:10000
MTR   10000 perm   2 sec   (4078 perm/sec)   p_kst 5.254000e-01   p_cons 3.660000e-01   p_joint 5.795000e-01

Outputting figure to mutsig2_images.part000000000109/MTR.7_3930_10000_0.5254_0.366_0.5795.png
                gene_name: MTR
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 22 percent done.
MSN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.045589e-02	ci left: 1.509016e-01	ci right 1.652982e-01	k: 1580	n:10000
Cons ci ratio: 3.260658e-02	ci left: 5.812885e-01	ci right 6.006585e-01	k: 5910	n:10000
KS ci ratio: 1.371664e-01	ci left: 7.029921e-02	ci right 8.074967e-02	k: 754	n:10000
MSN   10000 perm   2 sec   (5343 perm/sec)   p_kst 7.540000e-02   p_cons 5.910000e-01   p_joint 1.580000e-01

Joint ci ratio: 5.197982e-02	ci left: 2.156122e-01	ci right 2.271689e-01	k: 4427	n:20000
Cons ci ratio: 2.314357e-02	ci left: 5.823441e-01	ci right 5.960300e-01	k: 11784	n:20000
KS ci ratio: 9.563005e-02	ci left: 7.378204e-02	ci right 8.124134e-02	k: 1549	n:20000
MSN   20000 perm   4 sec   (4609 perm/sec)   p_kst 7.745000e-02   p_cons 5.892000e-01   p_joint 2.213500e-01

Outputting figure to mutsig2_images.part000000000109/MSN.6_1786_20000_0.07745_0.5892_0.22135.png
                gene_name: MSN
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 24 percent done.
MTERFD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.117213e-02	ci left: 2.821093e-01	ci right 3.000126e-01	k: 2910	n:10000
Cons ci ratio: 1.200793e-01	ci left: 9.048895e-02	ci right 1.021474e-01	k: 962	n:10000
KS ci ratio: 1.978425e-02	ci left: 7.889804e-01	ci right 8.048463e-01	k: 7970	n:10000
MTERFD1   10000 perm   2 sec   (5325 perm/sec)   p_kst 7.970000e-01   p_cons 9.620000e-02   p_joint 2.910000e-01

Joint ci ratio: 4.521579e-02	ci left: 2.669334e-01	ci right 2.793326e-01	k: 5462	n:20000
Cons ci ratio: 8.547643e-02	ci left: 9.106848e-02	ci right 9.924966e-02	k: 1902	n:20000
KS ci ratio: 1.300257e-02	ci left: 8.142502e-01	ci right 8.249568e-01	k: 16393	n:20000
MTERFD1   20000 perm   4 sec   (4745 perm/sec)   p_kst 8.196500e-01   p_cons 9.510000e-02   p_joint 2.731000e-01

Outputting figure to mutsig2_images.part000000000109/MTERFD1.6_1282_20000_0.81965_0.0951_0.2731.png
                gene_name: MTERFD1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 26 percent done.
MTF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.565379e-02	ci left: 2.540943e-01	ci right 2.714441e-01	k: 2627	n:10000
Cons ci ratio: 8.908765e-02	ci left: 1.549259e-01	ci right 1.694715e-01	k: 1621	n:10000
KS ci ratio: 5.023176e-02	ci left: 3.688810e-01	ci right 3.879899e-01	k: 3784	n:10000
MTF1   10000 perm   2 sec   (4874 perm/sec)   p_kst 3.784000e-01   p_cons 1.621000e-01   p_joint 2.627000e-01

Outputting figure to mutsig2_images.part000000000109/MTF1.6_2302_10000_0.3784_0.1621_0.2627.png
                gene_name: MTF1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 28 percent done.
MTHFD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.128566e-01	ci left: 2.930086e-02	ci right 3.637471e-02	k: 327	n:10000
Cons ci ratio: 9.103792e-02	ci left: 1.492334e-01	ci right 1.635673e-01	k: 1563	n:10000
KS ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
MTHFD1   10000 perm   2 sec   (5224 perm/sec)   p_kst 7.700000e-03   p_cons 1.563000e-01   p_joint 3.270000e-02

Joint ci ratio: 2.160014e-01	ci left: 1.444865e-02	ci right 1.799402e-02	k: 323	n:20000
Cons ci ratio: 6.502883e-02	ci left: 1.487272e-01	ci right 1.587737e-01	k: 3074	n:20000
KS ci ratio: 3.106165e-01	ci left: 6.673885e-03	ci right 9.172365e-03	k: 157	n:20000
MTHFD1   20000 perm   4 sec   (4617 perm/sec)   p_kst 7.850000e-03   p_cons 1.537000e-01   p_joint 1.615000e-02

Joint ci ratio: 2.282778e-01	ci left: 8.621951e-03	ci right 1.087452e-02	k: 291	n:30000
Cons ci ratio: 5.303836e-02	ci left: 1.499325e-01	ci right 1.581346e-01	k: 4620	n:30000
KS ci ratio: 2.454029e-01	ci left: 7.398410e-03	ci right 9.498454e-03	k: 252	n:30000
MTHFD1   30000 perm   7 sec   (4297 perm/sec)   p_kst 8.400000e-03   p_cons 1.540000e-01   p_joint 9.700000e-03

Joint ci ratio: 1.833343e-01	ci left: 1.026340e-02	ci right 1.235845e-02	k: 451	n:40000
Cons ci ratio: 4.601364e-02	ci left: 1.500297e-01	ci right 1.571206e-01	k: 6142	n:40000
KS ci ratio: 2.113705e-01	ci left: 7.623672e-03	ci right 9.448754e-03	k: 340	n:40000
MTHFD1   40000 perm   10 sec   (4159 perm/sec)   p_kst 8.500000e-03   p_cons 1.535500e-01   p_joint 1.127500e-02

Joint ci ratio: 1.615392e-01	ci left: 1.069909e-02	ci right 1.259825e-02	k: 581	n:50000
Cons ci ratio: 4.109192e-02	ci left: 1.508067e-01	ci right 1.571535e-01	k: 7698	n:50000
KS ci ratio: 1.969573e-01	ci left: 7.085623e-03	ci right 8.652325e-03	k: 392	n:50000
MTHFD1   50000 perm   12 sec   (4064 perm/sec)   p_kst 7.840000e-03   p_cons 1.539600e-01   p_joint 1.162000e-02

Joint ci ratio: 1.631190e-01	ci left: 8.755277e-03	ci right 1.032605e-02	k: 571	n:60000
Cons ci ratio: 3.761953e-02	ci left: 1.503430e-01	ci right 1.561239e-01	k: 9193	n:60000
KS ci ratio: 1.814721e-01	ci left: 7.016139e-03	ci right 8.432101e-03	k: 462	n:60000
MTHFD1   60000 perm   15 sec   (3986 perm/sec)   p_kst 7.700000e-03   p_cons 1.532167e-01   p_joint 9.516667e-03

Joint ci ratio: 1.535159e-01	ci left: 8.519730e-03	ci right 9.949967e-03	k: 645	n:70000
Cons ci ratio: 3.480851e-02	ci left: 1.507093e-01	ci right 1.560624e-01	k: 10736	n:70000
KS ci ratio: 1.642476e-01	ci left: 7.408189e-03	ci right 8.747356e-03	k: 564	n:70000
MTHFD1   70000 perm   18 sec   (3911 perm/sec)   p_kst 8.057143e-03   p_cons 1.533714e-01   p_joint 9.214286e-03

Joint ci ratio: 1.364405e-01	ci left: 9.515288e-03	ci right 1.092057e-02	k: 816	n:80000
Cons ci ratio: 3.252105e-02	ci left: 1.511947e-01	ci right 1.562054e-01	k: 12295	n:80000
KS ci ratio: 1.520703e-01	ci left: 7.610775e-03	ci right 8.875277e-03	k: 658	n:80000
MTHFD1   80000 perm   21 sec   (3841 perm/sec)   p_kst 8.225000e-03   p_cons 1.536875e-01   p_joint 1.020000e-02

Joint ci ratio: 1.328741e-01	ci left: 8.941012e-03	ci right 1.022423e-02	k: 861	n:90000
Cons ci ratio: 3.075711e-02	ci left: 1.505323e-01	ci right 1.552456e-01	k: 13759	n:90000
KS ci ratio: 1.427318e-01	ci left: 7.717606e-03	ci right 8.914410e-03	k: 747	n:90000
MTHFD1   90000 perm   24 sec   (3774 perm/sec)   p_kst 8.300000e-03   p_cons 1.528778e-01   p_joint 9.566667e-03

Joint ci ratio: 9.307157e-02	ci left: 1.661814e-02	ci right 1.825002e-02	k: 1742	n:100000
Cons ci ratio: 2.916400e-02	ci left: 1.507838e-01	ci right 1.552563e-01	k: 15301	n:100000
KS ci ratio: 1.375179e-01	ci left: 7.505458e-03	ci right 8.623359e-03	k: 805	n:100000
MTHFD1   100000 perm   27 sec   (3710 perm/sec)   p_kst 8.050000e-03   p_cons 1.530100e-01   p_joint 1.742000e-02

Joint ci ratio: 9.148092e-02	ci left: 1.566656e-02	ci right 1.717728e-02	k: 1805	n:110000
Cons ci ratio: 2.781089e-02	ci left: 1.508502e-01	ci right 1.551136e-01	k: 16827	n:110000
KS ci ratio: 1.309396e-01	ci left: 7.552371e-03	ci right 8.619264e-03	k: 888	n:110000
MTHFD1   110000 perm   30 sec   (3652 perm/sec)   p_kst 8.072727e-03   p_cons 1.529727e-01   p_joint 1.640909e-02

Joint ci ratio: 9.397806e-02	ci left: 1.361957e-02	ci right 1.497071e-02	k: 1714	n:120000
Cons ci ratio: 2.664217e-02	ci left: 1.507934e-01	ci right 1.548734e-01	k: 18339	n:120000
KS ci ratio: 1.256147e-01	ci left: 7.544085e-03	ci right 8.563238e-03	k: 965	n:120000
MTHFD1   120000 perm   33 sec   (3585 perm/sec)   p_kst 8.041667e-03   p_cons 1.528250e-01   p_joint 1.428333e-02

Joint ci ratio: 1.136934e-01	ci left: 8.546080e-03	ci right 9.583689e-03	k: 1177	n:130000
Cons ci ratio: 2.560788e-02	ci left: 1.507639e-01	ci right 1.546824e-01	k: 19853	n:130000
KS ci ratio: 1.207159e-01	ci left: 7.560202e-03	ci right 8.538856e-03	k: 1045	n:130000
MTHFD1   130000 perm   37 sec   (3519 perm/sec)   p_kst 8.038462e-03   p_cons 1.527154e-01   p_joint 9.053846e-03

Joint ci ratio: 9.784092e-02	ci left: 1.078077e-02	ci right 1.189675e-02	k: 1586	n:140000
Cons ci ratio: 2.465272e-02	ci left: 1.510824e-01	ci right 1.548606e-01	k: 21415	n:140000
KS ci ratio: 1.165053e-01	ci left: 7.553870e-03	ci right 8.495249e-03	k: 1122	n:140000
MTHFD1   140000 perm   40 sec   (3466 perm/sec)   p_kst 8.014286e-03   p_cons 1.529643e-01   p_joint 1.132857e-02

Joint ci ratio: 1.030206e-01	ci left: 9.067237e-03	ci right 1.005853e-02	k: 1433	n:150000
Cons ci ratio: 2.384608e-02	ci left: 1.508300e-01	ci right 1.544767e-01	k: 22897	n:150000
KS ci ratio: 1.136170e-01	ci left: 7.425789e-03	ci right 8.326723e-03	k: 1180	n:150000
MTHFD1   150000 perm   44 sec   (3414 perm/sec)   p_kst 7.866667e-03   p_cons 1.526467e-01   p_joint 9.553333e-03

Joint ci ratio: 8.537012e-02	ci left: 1.245068e-02	ci right 1.356707e-02	k: 2080	n:160000
Cons ci ratio: 2.308526e-02	ci left: 1.509283e-01	ci right 1.544593e-01	k: 24430	n:160000
KS ci ratio: 1.101297e-01	ci left: 7.423386e-03	ci right 8.294590e-03	k: 1256	n:160000
MTHFD1   160000 perm   48 sec   (3366 perm/sec)   p_kst 7.850000e-03   p_cons 1.526875e-01   p_joint 1.300000e-02

Joint ci ratio: 7.625738e-02	ci left: 1.472186e-02	ci right 1.589475e-02	k: 2601	n:170000
Cons ci ratio: 2.237206e-02	ci left: 1.512566e-01	ci right 1.546846e-01	k: 26004	n:170000
KS ci ratio: 1.066230e-01	ci left: 7.467450e-03	ci right 8.314168e-03	k: 1340	n:170000
MTHFD1   170000 perm   51 sec   (3318 perm/sec)   p_kst 7.882353e-03   p_cons 1.529647e-01   p_joint 1.530000e-02

Joint ci ratio: 7.167787e-02	ci left: 1.575825e-02	ci right 1.693518e-02	k: 2941	n:180000
Cons ci ratio: 2.172996e-02	ci left: 1.514449e-01	ci right 1.547774e-01	k: 27559	n:180000
KS ci ratio: 1.029950e-01	ci left: 7.571966e-03	ci right 8.399553e-03	k: 1436	n:180000
MTHFD1   180000 perm   55 sec   (3273 perm/sec)   p_kst 7.977778e-03   p_cons 1.531056e-01   p_joint 1.633889e-02

Joint ci ratio: 7.137726e-02	ci left: 1.506824e-02	ci right 1.618871e-02	k: 2968	n:190000
Cons ci ratio: 2.117021e-02	ci left: 1.512478e-01	ci right 1.544892e-01	k: 29044	n:190000
KS ci ratio: 1.003759e-01	ci left: 7.563267e-03	ci right 8.367643e-03	k: 1512	n:190000
MTHFD1   190000 perm   59 sec   (3226 perm/sec)   p_kst 7.957895e-03   p_cons 1.528632e-01   p_joint 1.562105e-02

Joint ci ratio: 7.009890e-02	ci left: 1.485504e-02	ci right 1.593907e-02	k: 3078	n:200000
Cons ci ratio: 2.062210e-02	ci left: 1.514398e-01	ci right 1.546003e-01	k: 30603	n:200000
KS ci ratio: 9.766853e-02	ci left: 7.599586e-03	ci right 8.384775e-03	k: 1597	n:200000
MTHFD1   200000 perm   63 sec   (3177 perm/sec)   p_kst 7.985000e-03   p_cons 1.530150e-01   p_joint 1.539000e-02

Outputting figure to mutsig2_images.part000000000109/MTHFD1.6_2916_200000_0.007985_0.15302_0.01539.png
                gene_name: MTHFD1
               theta_stop: 0.098 
                    nperm: 200000 
                     p_ks: 0.0080 
        ci_ks_bounds_left: 0.0076 
       ci_ks_bounds_right: 0.0084 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 30 percent done.
MTA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.008330e-02	ci left: 7.840118e-01	ci right 8.000177e-01	k: 7921	n:10000
KS ci ratio: 8.952882e-03	ci left: 9.460656e-01	ci right 9.546696e-01	k: 9505	n:10000
MTA2   10000 perm   2 sec   (5113 perm/sec)   p_kst 9.505000e-01   p_cons 7.921000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTA2.5_2079_10000_0.9505_0.7921_1.png
                gene_name: MTA2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
MTBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.868041e-02	ci left: 6.418666e-01	ci right 6.606452e-01	k: 6513	n:10000
Cons ci ratio: 5.881241e-02	ci left: 2.984627e-01	ci right 3.166495e-01	k: 3075	n:10000
KS ci ratio: 1.639828e-02	ci left: 8.439706e-01	ci right 8.580243e-01	k: 8511	n:10000
MTBP   10000 perm   2 sec   (4839 perm/sec)   p_kst 8.511000e-01   p_cons 3.075000e-01   p_joint 6.513000e-01

Outputting figure to mutsig2_images.part000000000109/MTBP.5_2803_10000_0.8511_0.3075_0.6513.png
                gene_name: MTBP
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 35 percent done.
MTF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.475004e-02	ci left: 3.295215e-01	ci right 3.481725e-01	k: 3388	n:10000
Cons ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
KS ci ratio: 4.806084e-02	ci left: 3.897810e-01	ci right 4.090776e-01	k: 3994	n:10000
MTF2   10000 perm   2 sec   (5044 perm/sec)   p_kst 3.994000e-01   p_cons 2.157000e-01   p_joint 3.388000e-01

Outputting figure to mutsig2_images.part000000000109/MTF2.5_1842_10000_0.3994_0.2157_0.3388.png
                gene_name: MTF2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 37 percent done.
MTFR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.133555e-02	ci left: 2.810196e-01	ci right 2.989030e-01	k: 2899	n:10000
Cons ci ratio: 2.779552e-02	ci left: 6.560548e-01	ci right 6.746488e-01	k: 6654	n:10000
KS ci ratio: 8.349549e-02	ci left: 1.730058e-01	ci right 1.881808e-01	k: 1805	n:10000
MTFR1   10000 perm   2 sec   (5692 perm/sec)   p_kst 1.805000e-01   p_cons 6.654000e-01   p_joint 2.899000e-01

Outputting figure to mutsig2_images.part000000000109/MTFR1.5_1144_10000_0.1805_0.6654_0.2899.png
                gene_name: MTFR1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 39 percent done.
MTMR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.304623e-01	ci left: 7.737381e-02	ci right 8.827067e-02	k: 827	n:10000
Cons ci ratio: 6.432188e-01	ci left: 2.522631e-03	ci right 4.980467e-03	k: 36	n:10000
KS ci ratio: 6.580662e-02	ci left: 2.532041e-01	ci right 2.705349e-01	k: 2618	n:10000
MTMR1   10000 perm   2 sec   (5410 perm/sec)   p_kst 2.618000e-01   p_cons 3.600000e-03   p_joint 8.270000e-02

Joint ci ratio: 1.011475e-01	ci left: 6.630631e-02	ci right 7.341936e-02	k: 1396	n:20000
Cons ci ratio: 4.487885e-01	ci left: 2.950721e-03	ci right 4.698422e-03	k: 75	n:20000
KS ci ratio: 4.666541e-02	ci left: 2.546754e-01	ci right 2.668942e-01	k: 5215	n:20000
MTMR1   20000 perm   4 sec   (4840 perm/sec)   p_kst 2.607500e-01   p_cons 3.750000e-03   p_joint 6.980000e-02

Joint ci ratio: 8.021497e-02	ci left: 7.076809e-02	ci right 7.671478e-02	k: 2211	n:30000
Cons ci ratio: 3.747790e-01	ci left: 2.954057e-03	ci right 4.344801e-03	k: 108	n:30000
KS ci ratio: 3.934667e-02	ci left: 2.436840e-01	ci right 2.534980e-01	k: 7457	n:30000
MTMR1   30000 perm   7 sec   (4612 perm/sec)   p_kst 2.485667e-01   p_cons 3.600000e-03   p_joint 7.370000e-02

Joint ci ratio: 7.962790e-02	ci left: 5.484583e-02	ci right 5.941873e-02	k: 2284	n:40000
Cons ci ratio: 3.295371e-01	ci left: 2.945046e-03	ci right 4.128835e-03	k: 140	n:40000
KS ci ratio: 3.406843e-02	ci left: 2.444201e-01	ci right 2.529164e-01	k: 9946	n:40000
MTMR1   40000 perm   9 sec   (4458 perm/sec)   p_kst 2.486500e-01   p_cons 3.500000e-03   p_joint 5.710000e-02

Joint ci ratio: 6.931448e-02	ci left: 5.803233e-02	ci right 6.221892e-02	k: 3005	n:50000
Cons ci ratio: 2.949577e-01	ci left: 3.001357e-03	ci right 4.057579e-03	k: 175	n:50000
KS ci ratio: 3.066667e-02	ci left: 2.425084e-01	ci right 2.500811e-01	k: 12314	n:50000
MTMR1   50000 perm   12 sec   (4335 perm/sec)   p_kst 2.462800e-01   p_cons 3.500000e-03   p_joint 6.010000e-02

Joint ci ratio: 6.809980e-02	ci left: 5.054836e-02	ci right 5.412843e-02	k: 3139	n:60000
Cons ci ratio: 2.644030e-01	ci left: 3.167712e-03	ci right 4.147930e-03	k: 218	n:60000
KS ci ratio: 2.804509e-02	ci left: 2.421764e-01	ci right 2.490815e-01	k: 14737	n:60000
MTMR1   60000 perm   14 sec   (4215 perm/sec)   p_kst 2.456167e-01   p_cons 3.633333e-03   p_joint 5.231667e-02

Joint ci ratio: 7.904263e-02	ci left: 3.259960e-02	ci right 3.529636e-02	k: 2375	n:70000
Cons ci ratio: 2.450307e-01	ci left: 3.196683e-03	ci right 4.102371e-03	k: 254	n:70000
KS ci ratio: 2.519962e-02	ci left: 2.536378e-01	ci right 2.601252e-01	k: 17981	n:70000
MTMR1   70000 perm   17 sec   (4104 perm/sec)   p_kst 2.568714e-01   p_cons 3.628571e-03   p_joint 3.392857e-02

Joint ci ratio: 6.596555e-02	ci left: 4.087874e-02	ci right 4.367958e-02	k: 3381	n:80000
Cons ci ratio: 2.278086e-01	ci left: 3.267529e-03	ci right 4.119088e-03	k: 294	n:80000
KS ci ratio: 2.404342e-02	ci left: 2.463923e-01	ci right 2.524009e-01	k: 19951	n:80000
MTMR1   80000 perm   20 sec   (4012 perm/sec)   p_kst 2.493875e-01   p_cons 3.675000e-03   p_joint 4.226250e-02

Joint ci ratio: 5.918414e-02	ci left: 4.510055e-02	ci right 4.786211e-02	k: 4182	n:90000
Cons ci ratio: 2.137723e-01	ci left: 3.324367e-03	ci right 4.130363e-03	k: 334	n:90000
KS ci ratio: 2.271149e-02	ci left: 2.458564e-01	ci right 2.515154e-01	k: 22381	n:90000
MTMR1   90000 perm   23 sec   (3949 perm/sec)   p_kst 2.486778e-01   p_cons 3.711111e-03   p_joint 4.646667e-02

Joint ci ratio: 5.575052e-02	ci left: 4.579510e-02	ci right 4.843125e-02	k: 4710	n:100000
Cons ci ratio: 2.012406e-01	ci left: 3.399616e-03	ci right 4.169606e-03	k: 377	n:100000
KS ci ratio: 2.154653e-02	ci left: 2.459933e-01	ci right 2.513613e-01	k: 24867	n:100000
MTMR1   100000 perm   26 sec   (3889 perm/sec)   p_kst 2.486700e-01   p_cons 3.770000e-03   p_joint 4.710000e-02

Joint ci ratio: 5.469158e-02	ci left: 4.339658e-02	ci right 4.584568e-02	k: 4907	n:110000
Cons ci ratio: 1.918292e-01	ci left: 3.419026e-03	ci right 4.152973e-03	k: 415	n:110000
KS ci ratio: 2.053422e-02	ci left: 2.462926e-01	ci right 2.514115e-01	k: 27373	n:110000
MTMR1   110000 perm   29 sec   (3827 perm/sec)   p_kst 2.488455e-01   p_cons 3.772727e-03   p_joint 4.460909e-02

Joint ci ratio: 5.264263e-02	ci left: 4.300279e-02	ci right 4.533597e-02	k: 5299	n:120000
Cons ci ratio: 1.846491e-01	ci left: 3.396147e-03	ci right 4.094839e-03	k: 448	n:120000
KS ci ratio: 1.966903e-02	ci left: 2.462313e-01	ci right 2.511308e-01	k: 29841	n:120000
MTMR1   120000 perm   32 sec   (3771 perm/sec)   p_kst 2.486750e-01   p_cons 3.733333e-03   p_joint 4.415833e-02

Joint ci ratio: 5.184510e-02	ci left: 4.102994e-02	ci right 4.322132e-02	k: 5475	n:130000
Cons ci ratio: 1.774814e-01	ci left: 3.406626e-03	ci right 4.077348e-03	k: 485	n:130000
KS ci ratio: 1.894100e-02	ci left: 2.454702e-01	ci right 2.501718e-01	k: 32216	n:130000
MTMR1   130000 perm   35 sec   (3716 perm/sec)   p_kst 2.478154e-01   p_cons 3.730769e-03   p_joint 4.211538e-02

Joint ci ratio: 5.163765e-02	ci left: 3.851388e-02	ci right 4.056239e-02	k: 5534	n:140000
Cons ci ratio: 1.717491e-01	ci left: 3.388706e-03	ci right 4.032118e-03	k: 518	n:140000
KS ci ratio: 1.827169e-02	ci left: 2.451556e-01	ci right 2.496834e-01	k: 34638	n:140000
MTMR1   140000 perm   38 sec   (3660 perm/sec)   p_kst 2.474143e-01   p_cons 3.700000e-03   p_joint 3.952857e-02

Joint ci ratio: 4.943863e-02	ci left: 3.923128e-02	ci right 4.122654e-02	k: 6033	n:150000
Cons ci ratio: 1.669945e-01	ci left: 3.354310e-03	ci right 3.971786e-03	k: 548	n:150000
KS ci ratio: 1.767815e-02	ci left: 2.446862e-01	ci right 2.490570e-01	k: 37030	n:150000
MTMR1   150000 perm   42 sec   (3606 perm/sec)   p_kst 2.468667e-01   p_cons 3.653333e-03   p_joint 4.022000e-02

Joint ci ratio: 4.695004e-02	ci left: 4.076894e-02	ci right 4.273521e-02	k: 6679	n:160000
Cons ci ratio: 1.545198e-01	ci left: 3.696615e-03	ci right 4.321569e-03	k: 640	n:160000
KS ci ratio: 1.712392e-02	ci left: 2.446016e-01	ci right 2.488325e-01	k: 39474	n:160000
MTMR1   160000 perm   45 sec   (3550 perm/sec)   p_kst 2.467125e-01   p_cons 4.000000e-03   p_joint 4.174375e-02

Joint ci ratio: 4.586441e-02	ci left: 4.025428e-02	ci right 4.214964e-02	k: 7003	n:170000
Cons ci ratio: 1.499131e-01	ci left: 3.705501e-03	ci right 4.311606e-03	k: 680	n:170000
KS ci ratio: 1.661322e-02	ci left: 2.446522e-01	ci right 2.487565e-01	k: 41939	n:170000
MTMR1   170000 perm   49 sec   (3498 perm/sec)   p_kst 2.467000e-01   p_cons 4.000000e-03   p_joint 4.119412e-02

Joint ci ratio: 4.609402e-02	ci left: 3.773670e-02	ci right 3.952264e-02	k: 6952	n:180000
Cons ci ratio: 1.458987e-01	ci left: 3.702938e-03	ci right 4.290991e-03	k: 718	n:180000
KS ci ratio: 1.613286e-02	ci left: 2.449924e-01	ci right 2.489824e-01	k: 44457	n:180000
MTMR1   180000 perm   52 sec   (3445 perm/sec)   p_kst 2.469833e-01   p_cons 3.988889e-03   p_joint 3.862222e-02

Joint ci ratio: 4.649440e-02	ci left: 3.522405e-02	ci right 3.690593e-02	k: 6851	n:190000
Cons ci ratio: 1.415348e-01	ci left: 3.736378e-03	ci right 4.310496e-03	k: 763	n:190000
KS ci ratio: 1.571233e-02	ci left: 2.448154e-01	ci right 2.486976e-01	k: 46883	n:190000
MTMR1   190000 perm   56 sec   (3395 perm/sec)   p_kst 2.467526e-01   p_cons 4.015789e-03   p_joint 3.605789e-02

Joint ci ratio: 4.056433e-02	ci left: 4.370438e-02	ci right 4.551885e-02	k: 8921	n:200000
Cons ci ratio: 1.373701e-01	ci left: 3.776366e-03	ci right 4.338158e-03	k: 810	n:200000
KS ci ratio: 1.530534e-02	ci left: 2.450862e-01	ci right 2.488712e-01	k: 49395	n:200000
MTMR1   200000 perm   60 sec   (3348 perm/sec)   p_kst 2.469750e-01   p_cons 4.050000e-03   p_joint 4.460500e-02

Joint ci ratio: 3.784765e-02	ci left: 4.767945e-02	ci right 4.952351e-02	k: 10205	n:210000
Cons ci ratio: 1.332411e-01	ci left: 3.831184e-03	ci right 4.382643e-03	k: 861	n:210000
KS ci ratio: 1.492517e-02	ci left: 2.454131e-01	ci right 2.491082e-01	k: 51924	n:210000
MTMR1   210000 perm   64 sec   (3295 perm/sec)   p_kst 2.472571e-01   p_cons 4.100000e-03   p_joint 4.859524e-02

Joint ci ratio: 3.750589e-02	ci left: 4.641665e-02	ci right 4.819530e-02	k: 10406	n:220000
Cons ci ratio: 1.305446e-01	ci left: 3.815274e-03	ci right 4.352467e-03	k: 897	n:220000
KS ci ratio: 1.459264e-02	ci left: 2.451854e-01	ci right 2.487940e-01	k: 54337	n:220000
MTMR1   220000 perm   68 sec   (3252 perm/sec)   p_kst 2.469864e-01   p_cons 4.077273e-03   p_joint 4.730000e-02

Joint ci ratio: 3.617319e-02	ci left: 4.769887e-02	ci right 4.946036e-02	k: 11172	n:230000
Cons ci ratio: 1.277994e-01	ci left: 3.813478e-03	ci right 4.338271e-03	k: 936	n:230000
KS ci ratio: 1.425738e-02	ci left: 2.456029e-01	ci right 2.491339e-01	k: 56894	n:230000
MTMR1   230000 perm   72 sec   (3208 perm/sec)   p_kst 2.473652e-01   p_cons 4.069565e-03   p_joint 4.857391e-02

Joint ci ratio: 3.734212e-02	ci left: 4.307965e-02	ci right 4.472305e-02	k: 10535	n:240000
Cons ci ratio: 1.246448e-01	ci left: 3.848273e-03	ci right 4.363816e-03	k: 984	n:240000
KS ci ratio: 1.395605e-02	ci left: 2.456705e-01	ci right 2.491273e-01	k: 59375	n:240000
MTMR1   240000 perm   76 sec   (3164 perm/sec)   p_kst 2.473958e-01   p_cons 4.100000e-03   p_joint 4.389583e-02

Joint ci ratio: 4.950360e-02	ci left: 2.386195e-02	ci right 2.507711e-02	k: 6116	n:250000
Cons ci ratio: 1.220096e-01	ci left: 3.861038e-03	ci right 4.366565e-03	k: 1027	n:250000
KS ci ratio: 1.315810e-02	ci left: 2.602731e-01	ci right 2.637244e-01	k: 65499	n:250000
MTMR1   250000 perm   80 sec   (3120 perm/sec)   p_kst 2.619960e-01   p_cons 4.108000e-03   p_joint 2.446400e-02

Joint ci ratio: 4.764653e-02	ci left: 2.476819e-02	ci right 2.598089e-02	k: 6596	n:260000
Cons ci ratio: 1.194788e-01	ci left: 3.876658e-03	ci right 4.372958e-03	k: 1071	n:260000
KS ci ratio: 1.289912e-02	ci left: 2.604103e-01	ci right 2.637950e-01	k: 68146	n:260000
MTMR1   260000 perm   84 sec   (3077 perm/sec)   p_kst 2.621000e-01   p_cons 4.119231e-03   p_joint 2.536923e-02

Joint ci ratio: 4.297381e-02	ci left: 2.925346e-02	ci right 3.054184e-02	k: 8071	n:270000
Cons ci ratio: 1.171519e-01	ci left: 3.887625e-03	ci right 4.374966e-03	k: 1114	n:270000
KS ci ratio: 1.265158e-02	ci left: 2.606378e-01	ci right 2.639599e-01	k: 70820	n:270000
MTMR1   270000 perm   89 sec   (3035 perm/sec)   p_kst 2.622963e-01   p_cons 4.125926e-03   p_joint 2.989259e-02

Joint ci ratio: 4.249857e-02	ci left: 2.886222e-02	ci right 3.011897e-02	k: 8256	n:280000
Cons ci ratio: 1.150057e-01	ci left: 3.894427e-03	ci right 4.373069e-03	k: 1156	n:280000
KS ci ratio: 1.241971e-02	ci left: 2.607890e-01	ci right 2.640517e-01	k: 73477	n:280000
MTMR1   280000 perm   94 sec   (2985 perm/sec)   p_kst 2.624179e-01   p_cons 4.128571e-03   p_joint 2.948571e-02

Joint ci ratio: 4.232862e-02	ci left: 2.811580e-02	ci right 2.933502e-02	k: 8329	n:290000
Cons ci ratio: 1.134015e-01	ci left: 3.870676e-03	ci right 4.339320e-03	k: 1189	n:290000
KS ci ratio: 1.219861e-02	ci left: 2.609784e-01	ci right 2.641849e-01	k: 76148	n:290000
MTMR1   290000 perm   98 sec   (2944 perm/sec)   p_kst 2.625793e-01   p_cons 4.100000e-03   p_joint 2.872069e-02

Joint ci ratio: 4.064465e-02	ci left: 2.946176e-02	ci right 3.068734e-02	k: 9021	n:300000
Cons ci ratio: 1.113156e-01	ci left: 3.887440e-03	ci right 4.348887e-03	k: 1234	n:300000
KS ci ratio: 1.198819e-02	ci left: 2.611790e-01	ci right 2.643322e-01	k: 78826	n:300000
MTMR1   300000 perm   103 sec   (2905 perm/sec)   p_kst 2.627533e-01   p_cons 4.113333e-03   p_joint 3.007000e-02

Joint ci ratio: 3.674642e-02	ci left: 3.475863e-02	ci right 3.606297e-02	k: 10976	n:310000
Cons ci ratio: 1.094696e-01	ci left: 3.893782e-03	ci right 4.347823e-03	k: 1276	n:310000
KS ci ratio: 1.179105e-02	ci left: 2.612769e-01	ci right 2.643791e-01	k: 81476	n:310000
MTMR1   310000 perm   108 sec   (2868 perm/sec)   p_kst 2.628258e-01   p_cons 4.116129e-03   p_joint 3.540645e-02

Joint ci ratio: 3.694913e-02	ci left: 3.334997e-02	ci right 3.460849e-02	k: 10872	n:320000
Cons ci ratio: 1.074673e-01	ci left: 3.918034e-03	ci right 4.366019e-03	k: 1324	n:320000
KS ci ratio: 1.160650e-02	ci left: 2.612631e-01	ci right 2.643162e-01	k: 84092	n:320000
MTMR1   320000 perm   113 sec   (2835 perm/sec)   p_kst 2.627875e-01   p_cons 4.137500e-03   p_joint 3.397500e-02

Joint ci ratio: 3.520096e-02	ci left: 3.558029e-02	ci right 3.685817e-02	k: 11951	n:330000
Cons ci ratio: 1.058034e-01	ci left: 3.923185e-03	ci right 4.364381e-03	k: 1366	n:330000
KS ci ratio: 1.143009e-02	ci left: 2.612595e-01	ci right 2.642659e-01	k: 86711	n:330000
MTMR1   330000 perm   118 sec   (2801 perm/sec)   p_kst 2.627606e-01   p_cons 4.139394e-03   p_joint 3.621515e-02

Joint ci ratio: 3.766915e-02	ci left: 3.028589e-02	ci right 3.145153e-02	k: 10494	n:340000
Cons ci ratio: 1.044380e-01	ci left: 3.910894e-03	ci right 4.344683e-03	k: 1402	n:340000
KS ci ratio: 1.125935e-02	ci left: 2.613299e-01	ci right 2.642918e-01	k: 89355	n:340000
MTMR1   340000 perm   123 sec   (2770 perm/sec)   p_kst 2.628088e-01   p_cons 4.123529e-03   p_joint 3.086471e-02

Joint ci ratio: 3.741699e-02	ci left: 2.983651e-02	ci right 3.097700e-02	k: 10641	n:350000
Cons ci ratio: 1.031242e-01	ci left: 3.899340e-03	ci right 4.326077e-03	k: 1438	n:350000
KS ci ratio: 1.109530e-02	ci left: 2.614222e-01	ci right 2.643417e-01	k: 92008	n:350000
MTMR1   350000 perm   128 sec   (2737 perm/sec)   p_kst 2.628800e-01   p_cons 4.108571e-03   p_joint 3.040286e-02

Joint ci ratio: 3.689375e-02	ci left: 2.984432e-02	ci right 3.096881e-02	k: 10945	n:360000
Cons ci ratio: 1.017548e-01	ci left: 3.896583e-03	ci right 4.317017e-03	k: 1477	n:360000
KS ci ratio: 1.094481e-02	ci left: 2.612768e-01	ci right 2.641548e-01	k: 94577	n:360000
MTMR1   360000 perm   133 sec   (2706 perm/sec)   p_kst 2.627139e-01   p_cons 4.102778e-03   p_joint 3.040278e-02

Joint ci ratio: 3.780683e-02	ci left: 2.770107e-02	ci right 2.877120e-02	k: 10446	n:370000
Cons ci ratio: 1.000092e-01	ci left: 3.928268e-03	ci right 4.344422e-03	k: 1529	n:370000
KS ci ratio: 1.079191e-02	ci left: 2.614389e-01	ci right 2.642783e-01	k: 97257	n:370000
MTMR1   370000 perm   138 sec   (2674 perm/sec)   p_kst 2.628568e-01   p_cons 4.132432e-03   p_joint 2.823243e-02

Joint ci ratio: 3.771193e-02	ci left: 2.712574e-02	ci right 2.817095e-02	k: 10505	n:380000
Cons ci ratio: 9.879037e-02	ci left: 3.922405e-03	ci right 4.332581e-03	k: 1567	n:380000
KS ci ratio: 1.064691e-02	ci left: 2.615324e-01	ci right 2.643344e-01	k: 99914	n:380000
MTMR1   380000 perm   144 sec   (2641 perm/sec)   p_kst 2.629316e-01   p_cons 4.123684e-03   p_joint 2.764474e-02

Outputting figure to mutsig2_images.part000000000109/MTMR1.5_2058_380000_0.26293_0.0041237_0.027645.png
                gene_name: MTMR1
               theta_stop: 0.099 
                    nperm: 380000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.0041 
      ci_cons_bounds_left: 0.0039 
     ci_cons_bounds_right: 0.0043 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.028 

Current progress: 41 percent done.
MTMR10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.987856e-02	ci left: 2.909285e-01	ci right 3.089882e-01	k: 2999	n:10000
Cons ci ratio: 1.152409e-01	ci left: 9.769325e-02	ci right 1.097387e-01	k: 1036	n:10000
KS ci ratio: 2.262572e-02	ci left: 7.414922e-01	ci right 7.585620e-01	k: 7501	n:10000
MTMR10   10000 perm   2 sec   (5107 perm/sec)   p_kst 7.501000e-01   p_cons 1.036000e-01   p_joint 2.999000e-01

Joint ci ratio: 4.561193e-02	ci left: 2.635085e-01	ci right 2.758585e-01	k: 5393	n:20000
Cons ci ratio: 8.188621e-02	ci left: 9.857491e-02	ci right 1.070410e-01	k: 2055	n:20000
KS ci ratio: 1.636806e-02	ci left: 7.353222e-01	ci right 7.475076e-01	k: 14829	n:20000
MTMR10   20000 perm   4 sec   (4571 perm/sec)   p_kst 7.414500e-01   p_cons 1.027500e-01   p_joint 2.696500e-01

Outputting figure to mutsig2_images.part000000000109/MTMR10.5_2398_20000_0.74145_0.10275_0.26965.png
                gene_name: MTMR10
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 43 percent done.
MTMR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.664856e-02	ci left: 6.746845e-01	ci right 6.930083e-01	k: 6839	n:10000
KS ci ratio: 1.248199e-02	ci left: 9.021657e-01	ci right 9.135954e-01	k: 9080	n:10000
MTMR7   10000 perm   2 sec   (5101 perm/sec)   p_kst 9.080000e-01   p_cons 6.839000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTMR7.5_2039_10000_0.908_0.6839_1.png
                gene_name: MTMR7
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
MSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.235415e-02	ci left: 4.514920e-01	ci right 4.711305e-01	k: 4613	n:10000
Cons ci ratio: 4.938832e-02	ci left: 3.768407e-01	ci right 3.960255e-01	k: 3864	n:10000
KS ci ratio: 7.669991e-02	ci left: 1.990953e-01	ci right 2.150757e-01	k: 2070	n:10000
MSR1   10000 perm   2 sec   (6016 perm/sec)   p_kst 2.070000e-01   p_cons 3.864000e-01   p_joint 4.613000e-01

Outputting figure to mutsig2_images.part000000000109/MSR1.4_1440_10000_0.207_0.3864_0.4613.png
                gene_name: MSR1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 48 percent done.
MSRB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.680217e-02	ci left: 4.025292e-01	ci right 4.219220e-01	k: 4122	n:10000
Cons ci ratio: 8.318649e-02	ci left: 1.740876e-01	ci right 1.892983e-01	k: 1816	n:10000
KS ci ratio: 4.090877e-02	ci left: 4.687666e-01	ci right 4.884459e-01	k: 4786	n:10000
MSRB3   10000 perm   2 sec   (5967 perm/sec)   p_kst 4.786000e-01   p_cons 1.816000e-01   p_joint 4.122000e-01

Outputting figure to mutsig2_images.part000000000109/MSRB3.4_683_10000_0.4786_0.1816_0.4122.png
                gene_name: MSRB3
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 50 percent done.
MTDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.782306e-02	ci left: 5.079524e-01	ci right 5.276372e-01	k: 5178	n:10000
Cons ci ratio: 3.080975e-02	ci left: 6.084942e-01	ci right 6.276370e-01	k: 6181	n:10000
KS ci ratio: 6.488330e-02	ci left: 2.586449e-01	ci right 2.760908e-01	k: 2673	n:10000
MTDH   10000 perm   2 sec   (5467 perm/sec)   p_kst 2.673000e-01   p_cons 6.181000e-01   p_joint 5.178000e-01

Outputting figure to mutsig2_images.part000000000109/MTDH.4_1797_10000_0.2673_0.6181_0.5178.png
                gene_name: MTDH
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 52 percent done.
MTERF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.884996e-02	ci left: 2.362992e-01	ci right 2.532497e-01	k: 2447	n:10000
Cons ci ratio: 6.336175e-02	ci left: 2.679478e-01	ci right 2.855824e-01	k: 2767	n:10000
KS ci ratio: 9.813331e-02	ci left: 1.308067e-01	ci right 1.444052e-01	k: 1375	n:10000
MTERF   10000 perm   2 sec   (5672 perm/sec)   p_kst 1.375000e-01   p_cons 2.767000e-01   p_joint 2.447000e-01

Outputting figure to mutsig2_images.part000000000109/MTERF.4_1208_10000_0.1375_0.2767_0.2447.png
                gene_name: MTERF
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 54 percent done.
MTIF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.104834e-02	ci left: 4.670686e-01	ci right 4.867449e-01	k: 4769	n:10000
Cons ci ratio: 7.023701e-02	ci left: 2.290880e-01	ci right 2.458652e-01	k: 2374	n:10000
KS ci ratio: 3.155843e-02	ci left: 5.970460e-01	ci right 6.162918e-01	k: 6067	n:10000
MTIF2   10000 perm   2 sec   (5313 perm/sec)   p_kst 6.067000e-01   p_cons 2.374000e-01   p_joint 4.769000e-01

Outputting figure to mutsig2_images.part000000000109/MTIF2.4_2236_10000_0.6067_0.2374_0.4769.png
                gene_name: MTIF2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 57 percent done.
MTM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.859582e-02	ci left: 3.845045e-01	ci right 4.037572e-01	k: 3941	n:10000
Cons ci ratio: 4.430567e-02	ci left: 4.292423e-01	ci right 4.487932e-01	k: 4390	n:10000
KS ci ratio: 7.321256e-02	ci left: 2.145771e-01	ci right 2.309847e-01	k: 2227	n:10000
MTM1   10000 perm   2 sec   (5307 perm/sec)   p_kst 2.227000e-01   p_cons 4.390000e-01   p_joint 3.941000e-01

Outputting figure to mutsig2_images.part000000000109/MTM1.4_1868_10000_0.2227_0.439_0.3941.png
                gene_name: MTM1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 59 percent done.
MTMR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.620859e-02	ci left: 4.087065e-01	ci right 4.281410e-01	k: 4184	n:10000
Cons ci ratio: 4.605704e-02	ci left: 4.103009e-01	ci right 4.297457e-01	k: 4200	n:10000
KS ci ratio: 5.144913e-02	ci left: 3.577420e-01	ci right 3.767354e-01	k: 3672	n:10000
MTMR3   10000 perm   2 sec   (4433 perm/sec)   p_kst 3.672000e-01   p_cons 4.200000e-01   p_joint 4.184000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR3.4_3700_10000_0.3672_0.42_0.4184.png
                gene_name: MTMR3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 61 percent done.
MTMR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.965300e-02	ci left: 6.264811e-01	ci right 6.454396e-01	k: 6360	n:10000
Cons ci ratio: 2.360353e-02	ci left: 7.251213e-01	ci right 7.425423e-01	k: 7339	n:10000
KS ci ratio: 4.056613e-02	ci left: 4.729622e-01	ci right 4.926478e-01	k: 4828	n:10000
MTMR6   10000 perm   2 sec   (5661 perm/sec)   p_kst 4.828000e-01   p_cons 7.339000e-01   p_joint 6.360000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR6.4_1922_10000_0.4828_0.7339_0.636.png
                gene_name: MTMR6
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 63 percent done.
MSL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.545961e-02	ci left: 6.942385e-01	ci right 7.122429e-01	k: 7033	n:10000
Cons ci ratio: 4.082690e-02	ci left: 4.697655e-01	ci right 4.894464e-01	k: 4796	n:10000
KS ci ratio: 2.601579e-02	ci left: 6.850639e-01	ci right 7.032228e-01	k: 6942	n:10000
MSL3   10000 perm   2 sec   (5864 perm/sec)   p_kst 6.942000e-01   p_cons 4.796000e-01   p_joint 7.033000e-01

Outputting figure to mutsig2_images.part000000000109/MSL3.3_1698_10000_0.6942_0.4796_0.7033.png
                gene_name: MSL3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 65 percent done.
MTERFD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.096898e-02	ci left: 1.494297e-01	ci right 1.637710e-01	k: 1565	n:10000
Cons ci ratio: 1.393752e-01	ci left: 6.816984e-02	ci right 7.848038e-02	k: 732	n:10000
KS ci ratio: 6.962205e-02	ci left: 2.322487e-01	ci right 2.491027e-01	k: 2406	n:10000
MTERFD2   10000 perm   2 sec   (6004 perm/sec)   p_kst 2.406000e-01   p_cons 7.320000e-02   p_joint 1.565000e-01

Joint ci ratio: 7.520342e-02	ci left: 1.150842e-01	ci right 1.241267e-01	k: 2391	n:20000
Cons ci ratio: 9.947345e-02	ci left: 6.845501e-02	ci right 7.567000e-02	k: 1440	n:20000
KS ci ratio: 4.898946e-02	ci left: 2.365233e-01	ci right 2.484517e-01	k: 4849	n:20000
MTERFD2   20000 perm   4 sec   (5221 perm/sec)   p_kst 2.424500e-01   p_cons 7.200000e-02   p_joint 1.195500e-01

Outputting figure to mutsig2_images.part000000000109/MTERFD2.3_1162_20000_0.24245_0.072_0.11955.png
                gene_name: MTERFD2
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 67 percent done.
MTG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.598207e-02	ci left: 3.196927e-01	ci right 3.382070e-01	k: 3289	n:10000
Cons ci ratio: 3.032241e-02	ci left: 6.160289e-01	ci right 6.350979e-01	k: 6256	n:10000
KS ci ratio: 6.421114e-02	ci left: 2.627020e-01	ci right 2.802313e-01	k: 2714	n:10000
MTG1   10000 perm   2 sec   (5974 perm/sec)   p_kst 2.714000e-01   p_cons 6.256000e-01   p_joint 3.289000e-01

Outputting figure to mutsig2_images.part000000000109/MTG1.3_1049_10000_0.2714_0.6256_0.3289.png
                gene_name: MTG1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 70 percent done.
MTHFSD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.465822e-02	ci left: 5.514072e-01	ci right 5.709571e-01	k: 5612	n:10000
KS ci ratio: 1.355848e-02	ci left: 8.869816e-01	ci right 8.991884e-01	k: 8932	n:10000
MTHFSD   10000 perm   2 sec   (6153 perm/sec)   p_kst 8.932000e-01   p_cons 5.612000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTHFSD.3_1302_10000_0.8932_0.5612_1.png
                gene_name: MTHFSD
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
MTMR11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.086850e-02	ci left: 6.075902e-01	ci right 6.267415e-01	k: 6172	n:10000
Cons ci ratio: 2.400855e-02	ci left: 7.183550e-01	ci right 7.359125e-01	k: 7272	n:10000
KS ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
MTMR11   10000 perm   2 sec   (5564 perm/sec)   p_kst 5.242000e-01   p_cons 7.272000e-01   p_joint 6.172000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR11.3_2237_10000_0.5242_0.7272_0.6172.png
                gene_name: MTMR11
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 74 percent done.
MTMR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.995523e-02	ci left: 7.861410e-01	ci right 8.020873e-01	k: 7942	n:10000
Cons ci ratio: 3.092731e-02	ci left: 6.066862e-01	ci right 6.258460e-01	k: 6163	n:10000
KS ci ratio: 3.892855e-02	ci left: 4.935506e-01	ci right 5.132474e-01	k: 5034	n:10000
MTMR4   10000 perm   2 sec   (4768 perm/sec)   p_kst 5.034000e-01   p_cons 6.163000e-01   p_joint 7.942000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR4.3_3660_10000_0.5034_0.6163_0.7942.png
                gene_name: MTMR4
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 76 percent done.
MTNR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.895871e-02	ci left: 6.374410e-01	ci right 6.562734e-01	k: 6469	n:10000
KS ci ratio: 3.993788e-02	ci left: 4.807559e-01	ci right 5.004496e-01	k: 4906	n:10000
MTNR1B   10000 perm   2 sec   (5640 perm/sec)   p_kst 4.906000e-01   p_cons 6.469000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTNR1B.3_1097_10000_0.4906_0.6469_1.png
                gene_name: MTNR1B
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
MTO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.552876e-02	ci left: 3.232663e-01	ci right 3.418313e-01	k: 3325	n:10000
Cons ci ratio: 9.659224e-02	ci left: 1.345280e-01	ci right 1.482816e-01	k: 1413	n:10000
KS ci ratio: 6.345683e-02	ci left: 2.673539e-01	ci right 2.849767e-01	k: 2761	n:10000
MTO1   10000 perm   2 sec   (5775 perm/sec)   p_kst 2.761000e-01   p_cons 1.413000e-01   p_joint 3.325000e-01

Outputting figure to mutsig2_images.part000000000109/MTO1.3_2330_10000_0.2761_0.1413_0.3325.png
                gene_name: MTO1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 80 percent done.
MTRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.671020e-02	ci left: 6.736771e-01	ci right 6.920163e-01	k: 6829	n:10000
KS ci ratio: 2.397226e-02	ci left: 7.189609e-01	ci right 7.365063e-01	k: 7278	n:10000
MTRF1   10000 perm   2 sec   (6518 perm/sec)   p_kst 7.278000e-01   p_cons 6.829000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000109/MTRF1.3_1374_10000_0.7278_0.6829_1.png
                gene_name: MTRF1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
MTX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.246439e-03	ci left: 9.535696e-01	ci right 9.615610e-01	k: 9577	n:10000
Cons ci ratio: 2.745299e-02	ci left: 6.615916e-01	ci right 6.801087e-01	k: 6709	n:10000
KS ci ratio: 2.688917e-02	ci left: 6.707558e-01	ci right 6.891393e-01	k: 6800	n:10000
MTX3   10000 perm   2 sec   (6280 perm/sec)   p_kst 6.800000e-01   p_cons 6.709000e-01   p_joint 9.577000e-01

Outputting figure to mutsig2_images.part000000000109/MTX3.3_975_10000_0.68_0.6709_0.9577.png
                gene_name: MTX3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 85 percent done.
MSRB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.010034e-01	ci left: 1.242496e-01	ci right 1.375662e-01	k: 1308	n:10000
Cons ci ratio: 4.141202e-02	ci left: 4.626742e-01	ci right 4.823418e-01	k: 4725	n:10000
KS ci ratio: 2.217497e-01	ci left: 2.693317e-02	ci right 3.374407e-02	k: 302	n:10000
MSRB2   10000 perm   1 sec   (6982 perm/sec)   p_kst 3.020000e-02   p_cons 4.725000e-01   p_joint 1.308000e-01

Joint ci ratio: 1.470601e-02	ci left: 7.745467e-01	ci right 7.860717e-01	k: 15607	n:20000
Cons ci ratio: 2.966374e-02	ci left: 4.591668e-01	ci right 4.730431e-01	k: 9322	n:20000
KS ci ratio: 1.550971e-01	ci left: 2.854513e-02	ci right 3.339250e-02	k: 618	n:20000
MSRB2   20000 perm   3 sec   (6067 perm/sec)   p_kst 3.090000e-02   p_cons 4.661000e-01   p_joint 7.803500e-01

Joint ci ratio: 2.831472e-02	ci left: 3.842754e-01	ci right 3.953459e-01	k: 11694	n:30000
Cons ci ratio: 2.418697e-02	ci left: 4.611413e-01	ci right 4.724651e-01	k: 14004	n:30000
KS ci ratio: 1.266724e-01	ci left: 2.897069e-02	ci right 3.292083e-02	k: 927	n:30000
MSRB2   30000 perm   5 sec   (5674 perm/sec)   p_kst 3.090000e-02   p_cons 4.668000e-01   p_joint 3.898000e-01

Joint ci ratio: 2.756546e-02	ci left: 3.311465e-01	ci right 3.404274e-01	k: 13431	n:40000
Cons ci ratio: 2.096681e-02	ci left: 4.614263e-01	ci right 4.712286e-01	k: 18653	n:40000
KS ci ratio: 1.092171e-01	ci left: 2.949349e-02	ci right 3.292501e-02	k: 1247	n:40000
MSRB2   40000 perm   7 sec   (5486 perm/sec)   p_kst 3.117500e-02   p_cons 4.663250e-01   p_joint 3.357750e-01

Joint ci ratio: 2.127612e-02	ci left: 4.000540e-01	ci right 4.086771e-01	k: 20218	n:50000
Cons ci ratio: 1.881553e-02	ci left: 4.603005e-01	ci right 4.690636e-01	k: 23234	n:50000
KS ci ratio: 9.742943e-02	ci left: 2.983005e-02	ci right 3.290468e-02	k: 1567	n:50000
MSRB2   50000 perm   9 sec   (5316 perm/sec)   p_kst 3.134000e-02   p_cons 4.646800e-01   p_joint 4.043600e-01

Outputting figure to mutsig2_images.part000000000109/MSRB2.2_569_50000_0.03134_0.46468_0.40436.png
                gene_name: MSRB2
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 87 percent done.
MTFMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.432065e-01	ci left: 6.468834e-02	ci right 7.476406e-02	k: 696	n:10000
Cons ci ratio: 7.066629e-02	ci left: 2.269154e-01	ci right 2.436391e-01	k: 2352	n:10000
KS ci ratio: 2.064358e-01	ci left: 3.119896e-02	ci right 3.847528e-02	k: 347	n:10000
MTFMT   10000 perm   2 sec   (6324 perm/sec)   p_kst 3.470000e-02   p_cons 2.352000e-01   p_joint 6.960000e-02

Joint ci ratio: 6.143133e-02	ci left: 1.639284e-01	ci right 1.743679e-01	k: 3382	n:20000
Cons ci ratio: 4.972044e-02	ci left: 2.311697e-01	ci right 2.430069e-01	k: 4741	n:20000
KS ci ratio: 1.451137e-01	ci left: 3.264050e-02	ci right 3.779577e-02	k: 703	n:20000
MTFMT   20000 perm   4 sec   (5488 perm/sec)   p_kst 3.515000e-02   p_cons 2.370500e-01   p_joint 1.691000e-01

Joint ci ratio: 9.885800e-02	ci left: 4.733292e-02	ci right 5.228806e-02	k: 1493	n:30000
Cons ci ratio: 4.034766e-02	ci left: 2.344808e-01	ci right 2.441698e-01	k: 7179	n:30000
KS ci ratio: 1.184276e-01	ci left: 3.314310e-02	ci right 3.734752e-02	k: 1056	n:30000
MTFMT   30000 perm   6 sec   (5184 perm/sec)   p_kst 3.520000e-02   p_cons 2.393000e-01   p_joint 4.976667e-02

Joint ci ratio: 8.532126e-02	ci left: 4.798238e-02	ci right 5.228323e-02	k: 2004	n:40000
Cons ci ratio: 3.506092e-02	ci left: 2.339078e-01	ci right 2.422802e-01	k: 9523	n:40000
KS ci ratio: 1.028014e-01	ci left: 3.326907e-02	ci right 3.689883e-02	k: 1402	n:40000
MTFMT   40000 perm   8 sec   (5034 perm/sec)   p_kst 3.505000e-02   p_cons 2.380750e-01   p_joint 5.010000e-02

Joint ci ratio: 9.685697e-02	ci left: 3.018157e-02	ci right 3.327311e-02	k: 1585	n:50000
Cons ci ratio: 3.145484e-02	ci left: 2.332581e-01	ci right 2.407324e-01	k: 11849	n:50000
KS ci ratio: 9.100494e-02	ci left: 3.414937e-02	ci right 3.742481e-02	k: 1788	n:50000
MTFMT   50000 perm   10 sec   (4898 perm/sec)   p_kst 3.576000e-02   p_cons 2.369800e-01   p_joint 3.170000e-02

Outputting figure to mutsig2_images.part000000000109/MTFMT.2_1206_50000_0.03576_0.23698_0.0317.png
                gene_name: MTFMT
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 89 percent done.
MTL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.143806e-02	ci left: 3.578414e-01	ci right 3.768359e-01	k: 3673	n:10000
Cons ci ratio: 4.254207e-02	ci left: 4.492961e-01	ci right 4.689277e-01	k: 4591	n:10000
KS ci ratio: 5.727471e-02	ci left: 3.097694e-01	ci right 3.281362e-01	k: 3189	n:10000
MTL5   10000 perm   2 sec   (6211 perm/sec)   p_kst 3.189000e-01   p_cons 4.591000e-01   p_joint 3.673000e-01

Outputting figure to mutsig2_images.part000000000109/MTL5.2_1567_10000_0.3189_0.4591_0.3673.png
                gene_name: MTL5
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 91 percent done.
MTMR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.086197e-02	ci left: 6.076906e-01	ci right 6.268410e-01	k: 6173	n:10000
Cons ci ratio: 3.231743e-02	ci left: 5.856032e-01	ci right 6.049412e-01	k: 5953	n:10000
KS ci ratio: 5.180519e-02	ci left: 3.545604e-01	ci right 3.735189e-01	k: 3640	n:10000
MTMR2   10000 perm   2 sec   (5959 perm/sec)   p_kst 3.640000e-01   p_cons 5.953000e-01   p_joint 6.173000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR2.2_1992_10000_0.364_0.5953_0.6173.png
                gene_name: MTMR2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 93 percent done.
MTMR9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.979647e-02	ci left: 7.887776e-01	ci right 8.046492e-01	k: 7968	n:10000
Cons ci ratio: 1.245212e-02	ci left: 9.025767e-01	ci right 9.139842e-01	k: 9084	n:10000
KS ci ratio: 7.686376e-02	ci left: 1.984054e-01	ci right 2.143660e-01	k: 2063	n:10000
MTMR9   10000 perm   2 sec   (6091 perm/sec)   p_kst 2.063000e-01   p_cons 9.084000e-01   p_joint 7.968000e-01

Outputting figure to mutsig2_images.part000000000109/MTMR9.2_1690_10000_0.2063_0.9084_0.7968.png
                gene_name: MTMR9
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 96 percent done.
MTRR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.818499e-01	ci left: 4.035041e-02	ci right 4.851765e-02	k: 443	n:10000
Cons ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
KS ci ratio: 3.050389e-02	ci left: 6.132157e-01	ci right 6.323128e-01	k: 6228	n:10000
MTRR   10000 perm   2 sec   (5893 perm/sec)   p_kst 6.228000e-01   p_cons 2.320000e-02   p_joint 4.430000e-02

Joint ci ratio: 1.289706e-01	ci left: 4.129596e-02	ci right 4.703752e-02	k: 882	n:20000
Cons ci ratio: 1.808539e-01	ci left: 2.087148e-02	ci right 2.506879e-02	k: 458	n:20000
KS ci ratio: 2.140791e-02	ci left: 6.196024e-01	ci right 6.330609e-01	k: 12527	n:20000
MTRR   20000 perm   4 sec   (5181 perm/sec)   p_kst 6.263500e-01   p_cons 2.290000e-02   p_joint 4.410000e-02

Joint ci ratio: 1.382469e-01	ci left: 2.429301e-02	ci right 2.793288e-02	k: 782	n:30000
Cons ci ratio: 1.456769e-01	ci left: 2.184756e-02	ci right 2.531222e-02	k: 706	n:30000
KS ci ratio: 1.750529e-02	ci left: 6.201617e-01	ci right 6.311473e-01	k: 18770	n:30000
MTRR   30000 perm   6 sec   (4937 perm/sec)   p_kst 6.256667e-01   p_cons 2.353333e-02   p_joint 2.606667e-02

Joint ci ratio: 8.743049e-02	ci left: 4.575415e-02	ci right 4.996180e-02	k: 1913	n:40000
Cons ci ratio: 1.245902e-01	ci left: 2.264346e-02	ci right 2.567616e-02	k: 965	n:40000
KS ci ratio: 1.522467e-02	ci left: 6.189060e-01	ci right 6.284260e-01	k: 24947	n:40000
MTRR   40000 perm   8 sec   (4785 perm/sec)   p_kst 6.236750e-01   p_cons 2.412500e-02   p_joint 4.782500e-02

Joint ci ratio: 1.021308e-01	ci left: 2.715643e-02	ci right 3.009863e-02	k: 1430	n:50000
Cons ci ratio: 1.123704e-01	ci left: 2.242330e-02	ci right 2.511238e-02	k: 1187	n:50000
KS ci ratio: 1.364514e-02	ci left: 6.184544e-01	ci right 6.269713e-01	k: 31136	n:50000
MTRR   50000 perm   11 sec   (4654 perm/sec)   p_kst 6.227200e-01   p_cons 2.374000e-02   p_joint 2.860000e-02

Joint ci ratio: 6.858518e-02	ci left: 4.985970e-02	ci right 5.341716e-02	k: 3097	n:60000
Cons ci ratio: 1.017279e-01	ci left: 2.292012e-02	ci right 2.539287e-02	k: 1448	n:60000
KS ci ratio: 1.247318e-02	ci left: 6.181895e-01	ci right 6.259654e-01	k: 37325	n:60000
MTRR   60000 perm   13 sec   (4543 perm/sec)   p_kst 6.220833e-01   p_cons 2.413333e-02   p_joint 5.161667e-02

Joint ci ratio: 7.421407e-02	ci left: 3.690432e-02	ci right 3.976268e-02	k: 2682	n:70000
Cons ci ratio: 9.416755e-02	ci left: 2.301840e-02	ci right 2.530699e-02	k: 1690	n:70000
KS ci ratio: 1.154929e-02	ci left: 6.184245e-01	ci right 6.256226e-01	k: 43542	n:70000
MTRR   70000 perm   16 sec   (4442 perm/sec)   p_kst 6.220286e-01   p_cons 2.414286e-02   p_joint 3.831429e-02

Outputting figure to mutsig2_images.part000000000109/MTRR.2_2238_70000_0.62203_0.024143_0.038314.png
                gene_name: MTRR
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.040 

Current progress: 98 percent done.
MTSS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.643068e-02	ci left: 5.266669e-01	ci right 5.463118e-01	k: 5365	n:10000
Cons ci ratio: 2.127910e-02	ci left: 7.640535e-01	ci right 7.805875e-01	k: 7724	n:10000
KS ci ratio: 5.769921e-02	ci left: 3.065949e-01	ci right 3.249125e-01	k: 3157	n:10000
MTSS1   10000 perm   2 sec   (5553 perm/sec)   p_kst 3.157000e-01   p_cons 7.724000e-01   p_joint 5.365000e-01

Outputting figure to mutsig2_images.part000000000109/MTSS1.2_2324_10000_0.3157_0.7724_0.5365.png
                gene_name: MTSS1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000109
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 109 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1714>
Subject: Job 9894022: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1714>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000110> was used as the working directory.
Started at Sat Oct  6 00:19:43 2012
Results reported at Sat Oct  6 06:25:33 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000110.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000110.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 110  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000110.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  22041.16 sec.
    Max Memory :      6408 MB
    Max Swap   :      8910 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
110
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 110
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 110: processing genes 9827 - 9917
Calculating significance of each gene.
Using projection method.
9827	MUC1	1
9828	MUC13	4.133555e-02
9829	MUC15	1.449904e-01
In gene MUC16 the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 43757   n = 1	mu =   2.96e-07
9830	MUC16	2.298808e-01
9831	MUC17	2.687096e-01
9832	MUC2	9.614615e-01
9833	MUC20	2.625656e-01
9834	MUC21	4.584039e-02
9835	MUC4	9.770653e-01
9836	MUC5B	9.999559e-01
9837	MUC6	9.901094e-01
9838	MUC7	1.064061e-02
9839	MUCL1	1
9840	MUDENG	7.400683e-01
9841	MUL1	2.756414e-01
9842	MUM1	2.256876e-01
9843	MUM1L1	7.422673e-02
9844	MURC	2.472271e-01
9845	MUS81	8.886550e-01
9846	MUSK	6.613048e-01
9847	MUSTN1	1
9848	MUT	5.049043e-01
9849	MUTED	1
9850	MUTYH	5.915958e-01
9851	MVD	1
9852	MVK	8.205843e-01
9853	MVP	5.975213e-01
9854	MX1	7.485738e-02
9855	MX2	8.110121e-01
In gene MXD1 the following bins exceed PROBCAP:
    COAD-AA-3852	categ 6	N = 613     n = 1	mu =   3.62e-07
9856	MXD1	5.545825e-02
9857	MXD3	1
9858	MXD4	1
9859	MXI1	6.525101e-02
9860	MXRA5	1.927832e-01
9861	MXRA7	3.777683e-01
9862	MXRA8	1
9863	MYADM	6.482032e-01
9864	MYB	7.671864e-01
9865	MYBBP1A	9.538708e-01
9866	MYBL1	2.282612e-01
9867	MYBL2	2.663724e-01
9868	MYBPC1	5.742096e-01
9869	MYBPC2	9.888278e-01
9870	MYBPC3	9.386848e-01
9871	MYBPH	3.867807e-02
9872	MYBPHL	9.419442e-02
9873	MYC	1
9874	MYCBP	3.628112e-01
9875	MYCBP2	5.086067e-01
9876	MYCBPAP	6.551622e-01
9877	MYCL1	5.482248e-01
9878	MYCN	7.796015e-01
9879	MYCT1	9.595227e-02
9880	MYD88	5.635000e-01
9881	MYEF2	1.435816e-02
9882	MYEOV	6.503651e-01
9883	MYEOV2	1
In gene MYF5 the following bins exceed PROBCAP:
    READ-AG-A008	categ 6	N = 780     n = 1	mu =   1.03e-07
9884	MYF5	1.835033e-02
9885	MYF6	5.989270e-01
9886	MYH1	7.545609e-01
9887	MYH10	6.962273e-01
9888	MYH11	2.546474e-03
9889	MYH13	9.686320e-01
9890	MYH14	4.210699e-01
9891	MYH15	8.605162e-01
9892	MYH2	7.896944e-01
9893	MYH3	8.053025e-01
9894	MYH4	3.032765e-01
9895	MYH6	8.477325e-01
9896	MYH7	7.670123e-01
9897	MYH7B	9.808451e-01
9898	MYH8	1.624941e-01
9899	MYH9	8.927865e-01
9900	MYL1	3.505639e-01
9901	MYL10	3.663905e-01
9902	MYL12A	1
9903	MYL12B	1
9904	MYL2	6.256775e-01
9905	MYL3	1
9906	MYL4	3.727093e-01
9907	MYL5	1
9908	MYL6	1
9909	MYL6B	1.048407e-01
9910	MYL7	6.167593e-01
9911	MYL9	1.751996e-01
9912	MYLIP	1
9913	MYLK	1.470963e-01
9914	MYLK2	2.427273e-01
9915	MYLK3	1.039764e-01
9916	MYLK4	1
9917	MYLPF	1
Done

Running MutSig 2:
Scatter job 110: processing genes 9827 - 9917
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
MUC16
Processing conservation and coverage...
22% 45% 68% 91% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.342088e-01	ci left: 7.330186e-02	ci right 8.394515e-02	k: 785	n:10000
Cons ci ratio: 9.507050e-02	ci left: 1.383491e-01	ci right 1.522583e-01	k: 1452	n:10000
KS ci ratio: 9.025256e-02	ci left: 1.514904e-01	ci right 1.659090e-01	k: 1586	n:10000
MUC16   10000 perm   10 sec   (1030 perm/sec)   p_kst 1.586000e-01   p_cons 1.452000e-01   p_joint 7.850000e-02

Joint ci ratio: 9.180014e-02	ci left: 7.970183e-02	ci right 8.741975e-02	k: 1670	n:20000
Cons ci ratio: 6.519175e-02	ci left: 1.480859e-01	ci right 1.581151e-01	k: 3061	n:20000
KS ci ratio: 6.300704e-02	ci left: 1.570167e-01	ci right 1.672817e-01	k: 3242	n:20000
MUC16   20000 perm   23 sec   (887 perm/sec)   p_kst 1.621000e-01   p_cons 1.530500e-01   p_joint 8.350000e-02

Outputting figure to mutsig2_images.part000000000110/MUC16.108_43860_20000_0.1621_0.15305_0.0835.png
                gene_name: MUC16
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.087 

Current progress: 2 percent done.
MYH11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.395411e-02	ci left: 7.192638e-01	ci right 7.368032e-01	k: 7281	n:10000
KS ci ratio: 1.070219e-02	ci left: 9.255458e-01	ci right 9.356016e-01	k: 9307	n:10000
MYH11   10000 perm   3 sec   (3210 perm/sec)   p_kst 9.307000e-01   p_cons 7.281000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYH11.28_6139_10000_0.9307_0.7281_1.png
                gene_name: MYH11
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
MUC17
Processing conservation and coverage...
73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.295844e-02	ci left: 5.760717e-01	ci right 5.954783e-01	k: 5858	n:10000
Cons ci ratio: 3.531729e-02	ci left: 5.420892e-01	ci right 5.616806e-01	k: 5519	n:10000
KS ci ratio: 5.051047e-02	ci left: 3.662946e-01	ci right 3.853777e-01	k: 3758	n:10000
MUC17   10000 perm   3 sec   (2863 perm/sec)   p_kst 3.758000e-01   p_cons 5.519000e-01   p_joint 5.858000e-01

Outputting figure to mutsig2_images.part000000000110/MUC17.23_13534_10000_0.3758_0.5519_0.5858.png
                gene_name: MUC17
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 5 percent done.
MXRA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.486641e-02	ci left: 8.676433e-01	ci right 8.807378e-01	k: 8743	n:10000
KS ci ratio: 1.560780e-02	ci left: 8.563091e-01	ci right 8.698787e-01	k: 8632	n:10000
MXRA5   10000 perm   3 sec   (3292 perm/sec)   p_kst 8.632000e-01   p_cons 8.743000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MXRA5.23_8511_10000_0.8632_0.8743_1.png
                gene_name: MXRA5
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
MYH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.287355e-02	ci left: 3.452172e-01	ci right 3.640676e-01	k: 3546	n:10000
Cons ci ratio: 2.602192e-02	ci left: 6.849632e-01	ci right 7.031237e-01	k: 6941	n:10000
KS ci ratio: 7.144074e-02	ci left: 2.230647e-01	ci right 2.396920e-01	k: 2313	n:10000
MYH8   10000 perm   3 sec   (3979 perm/sec)   p_kst 2.313000e-01   p_cons 6.941000e-01   p_joint 3.546000e-01

Outputting figure to mutsig2_images.part000000000110/MYH8.20_5966_10000_0.2313_0.6941_0.3546.png
                gene_name: MYH8
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 8 percent done.
MYCBP2
Processing conservation and coverage...
69% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
Cons ci ratio: 1.089014e-01	ci left: 1.084196e-01	ci right 1.210058e-01	k: 1146	n:10000
KS ci ratio: 4.199803e-02	ci left: 4.556848e-01	ci right 4.753353e-01	k: 4655	n:10000
MYCBP2   10000 perm   4 sec   (2742 perm/sec)   p_kst 4.655000e-01   p_cons 1.146000e-01   p_joint 2.869000e-01

Joint ci ratio: 4.376391e-02	ci left: 2.799920e-01	ci right 2.925701e-01	k: 5725	n:20000
Cons ci ratio: 8.135796e-02	ci left: 9.975307e-02	ci right 1.082624e-01	k: 2079	n:20000
KS ci ratio: 2.948556e-02	ci left: 4.621636e-01	ci right 4.760453e-01	k: 9382	n:20000
MYCBP2   20000 perm   8 sec   (2517 perm/sec)   p_kst 4.691000e-01   p_cons 1.039500e-01   p_joint 2.862500e-01

Outputting figure to mutsig2_images.part000000000110/MYCBP2.17_14369_20000_0.4691_0.10395_0.28625.png
                gene_name: MYCBP2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 9 percent done.
MYH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.888270e-02	ci left: 6.386479e-01	ci right 6.574658e-01	k: 6481	n:10000
KS ci ratio: 1.556815e-02	ci left: 8.569213e-01	ci right 8.704660e-01	k: 8638	n:10000
MYH1   10000 perm   2 sec   (4014 perm/sec)   p_kst 8.638000e-01   p_cons 6.481000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYH1.15_5972_10000_0.8638_0.6481_1.png
                gene_name: MYH1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
MYH13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.225356e-02	ci left: 2.191164e-01	ci right 2.356427e-01	k: 2273	n:10000
Cons ci ratio: 1.287741e-01	ci left: 7.931430e-02	ci right 9.032897e-02	k: 847	n:10000
KS ci ratio: 3.865703e-02	ci left: 4.970503e-01	ci right 5.167457e-01	k: 5069	n:10000
MYH13   10000 perm   2 sec   (4200 perm/sec)   p_kst 5.069000e-01   p_cons 8.470000e-02   p_joint 2.273000e-01

Joint ci ratio: 4.729076e-02	ci left: 2.496152e-01	ci right 2.617559e-01	k: 5113	n:20000
Cons ci ratio: 8.550126e-02	ci left: 9.101944e-02	ci right 9.919871e-02	k: 1901	n:20000
KS ci ratio: 2.709168e-02	ci left: 5.044460e-01	ci right 5.183506e-01	k: 10228	n:20000
MYH13   20000 perm   5 sec   (3795 perm/sec)   p_kst 5.114000e-01   p_cons 9.505000e-02   p_joint 2.556500e-01

Outputting figure to mutsig2_images.part000000000110/MYH13.15_5973_20000_0.5114_0.09505_0.25565.png
                gene_name: MYH13
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 12 percent done.
MYH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.244324e-02	ci left: 1.453096e-01	ci right 1.594935e-01	k: 1523	n:10000
Cons ci ratio: 1.328380e-01	ci left: 7.475563e-02	ci right 8.549047e-02	k: 800	n:10000
KS ci ratio: 6.820443e-02	ci left: 2.397579e-01	ci right 2.567890e-01	k: 2482	n:10000
MYH3   10000 perm   3 sec   (3868 perm/sec)   p_kst 2.482000e-01   p_cons 8.000000e-02   p_joint 1.523000e-01

Joint ci ratio: 6.320487e-02	ci left: 1.561777e-01	ci right 1.664210e-01	k: 3225	n:20000
Cons ci ratio: 9.126482e-02	ci left: 8.058298e-02	ci right 8.833833e-02	k: 1688	n:20000
KS ci ratio: 4.843583e-02	ci left: 2.406881e-01	ci right 2.526857e-01	k: 4933	n:20000
MYH3   20000 perm   6 sec   (3560 perm/sec)   p_kst 2.466500e-01   p_cons 8.440000e-02   p_joint 1.612500e-01

Outputting figure to mutsig2_images.part000000000110/MYH3.14_5979_20000_0.24665_0.0844_0.16125.png
                gene_name: MYH3
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 14 percent done.
MYLK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.635127e-02	ci left: 4.072119e-01	ci right 4.266366e-01	k: 4169	n:10000
Cons ci ratio: 3.423800e-02	ci left: 5.574207e-01	ci right 5.769402e-01	k: 5672	n:10000
KS ci ratio: 5.804816e-02	ci left: 3.040161e-01	ci right 3.222929e-01	k: 3131	n:10000
MYLK   10000 perm   3 sec   (3968 perm/sec)   p_kst 3.131000e-01   p_cons 5.672000e-01   p_joint 4.169000e-01

Outputting figure to mutsig2_images.part000000000110/MYLK.14_5869_10000_0.3131_0.5672_0.4169.png
                gene_name: MYLK
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 16 percent done.
MYH14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
Cons ci ratio: 7.714643e-02	ci left: 1.972229e-01	ci right 2.131492e-01	k: 2051	n:10000
KS ci ratio: 1.950999e-01	ci left: 3.500453e-02	ci right 4.266711e-02	k: 387	n:10000
MYH14   10000 perm   3 sec   (3581 perm/sec)   p_kst 3.870000e-02   p_cons 2.051000e-01   p_joint 4.320000e-02

Joint ci ratio: 1.117562e-01	ci left: 5.470261e-02	ci right 6.122664e-02	k: 1158	n:20000
Cons ci ratio: 5.561031e-02	ci left: 1.934364e-01	ci right 2.045513e-01	k: 3979	n:20000
KS ci ratio: 1.441613e-01	ci left: 3.307475e-02	ci right 3.826138e-02	k: 712	n:20000
MYH14   20000 perm   6 sec   (3376 perm/sec)   p_kst 3.560000e-02   p_cons 1.989500e-01   p_joint 5.790000e-02

Joint ci ratio: 1.037372e-01	ci left: 4.307172e-02	ci right 4.781681e-02	k: 1362	n:30000
Cons ci ratio: 4.534893e-02	ci left: 1.948583e-01	ci right 2.039333e-01	k: 5981	n:30000
KS ci ratio: 1.188361e-01	ci left: 3.291646e-02	ci right 3.710754e-02	k: 1049	n:30000
MYH14   30000 perm   9 sec   (3223 perm/sec)   p_kst 3.496667e-02   p_cons 1.993667e-01   p_joint 4.540000e-02

Joint ci ratio: 9.021275e-02	ci left: 4.303797e-02	ci right 4.712840e-02	k: 1802	n:40000
Cons ci ratio: 3.941233e-02	ci left: 1.943525e-01	ci right 2.021913e-01	k: 7930	n:40000
KS ci ratio: 1.037243e-01	ci left: 3.268405e-02	ci right 3.628394e-02	k: 1378	n:40000
MYH14   40000 perm   13 sec   (3184 perm/sec)   p_kst 3.445000e-02   p_cons 1.982500e-01   p_joint 4.505000e-02

Joint ci ratio: 7.473016e-02	ci left: 5.020745e-02	ci right 5.412475e-02	k: 2607	n:50000
Cons ci ratio: 3.519119e-02	ci left: 1.953094e-01	ci right 2.023256e-01	k: 9940	n:50000
KS ci ratio: 9.324431e-02	ci left: 3.254588e-02	ci right 3.574850e-02	k: 1706	n:50000
MYH14   50000 perm   16 sec   (3160 perm/sec)   p_kst 3.412000e-02   p_cons 1.988000e-01   p_joint 5.214000e-02

Outputting figure to mutsig2_images.part000000000110/MYH14.12_6279_50000_0.03412_0.1988_0.05214.png
                gene_name: MYH14
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.054 

Current progress: 17 percent done.
MYH15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.051037e-02	ci left: 9.279223e-01	ci right 9.378237e-01	k: 9330	n:10000
Cons ci ratio: 3.057533e-02	ci left: 6.121106e-01	ci right 6.312185e-01	k: 6217	n:10000
KS ci ratio: 5.959290e-03	ci left: 9.744004e-01	ci right 9.803170e-01	k: 9775	n:10000
MYH15   10000 perm   2 sec   (4302 perm/sec)   p_kst 9.775000e-01   p_cons 6.217000e-01   p_joint 9.330000e-01

Outputting figure to mutsig2_images.part000000000110/MYH15.12_6009_10000_0.9775_0.6217_0.933.png
                gene_name: MYH15
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 19 percent done.
MYH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.488330e-02	ci left: 2.586449e-01	ci right 2.760908e-01	k: 2673	n:10000
Cons ci ratio: 4.590614e-02	ci left: 4.118954e-01	ci right 4.313503e-01	k: 4216	n:10000
KS ci ratio: 7.691072e-02	ci left: 1.982083e-01	ci right 2.141632e-01	k: 2061	n:10000
MYH2   10000 perm   3 sec   (3811 perm/sec)   p_kst 2.061000e-01   p_cons 4.216000e-01   p_joint 2.673000e-01

Outputting figure to mutsig2_images.part000000000110/MYH2.12_5978_10000_0.2061_0.4216_0.2673.png
                gene_name: MYH2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 20 percent done.
MYH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.717362e-02	ci left: 8.316480e-01	ci right 8.461540e-01	k: 8390	n:10000
Cons ci ratio: 3.638676e-02	ci left: 5.272676e-01	ci right 5.469108e-01	k: 5371	n:10000
KS ci ratio: 2.031471e-02	ci left: 7.801599e-01	ci right 7.962719e-01	k: 7883	n:10000
MYH4   10000 perm   2 sec   (4106 perm/sec)   p_kst 7.883000e-01   p_cons 5.371000e-01   p_joint 8.390000e-01

Outputting figure to mutsig2_images.part000000000110/MYH4.12_5972_10000_0.7883_0.5371_0.839.png
                gene_name: MYH4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 22 percent done.
MYH6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.291772e-02	ci left: 5.766736e-01	ci right 5.960761e-01	k: 5864	n:10000
Cons ci ratio: 5.739775e-03	ci left: 9.761027e-01	ci right 9.818135e-01	k: 9791	n:10000
KS ci ratio: 4.604759e-02	ci left: 4.104006e-01	ci right 4.298460e-01	k: 4201	n:10000
MYH6   10000 perm   2 sec   (4192 perm/sec)   p_kst 4.201000e-01   p_cons 9.791000e-01   p_joint 5.864000e-01

Outputting figure to mutsig2_images.part000000000110/MYH6.12_5968_10000_0.4201_0.9791_0.5864.png
                gene_name: MYH6
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 23 percent done.
MYH9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.129120e-02	ci left: 7.638510e-01	ci right 7.803902e-01	k: 7722	n:10000
Cons ci ratio: 5.184997e-02	ci left: 3.541627e-01	ci right 3.731168e-01	k: 3636	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
MYH9   10000 perm   2 sec   (4145 perm/sec)   p_kst 1   p_cons 3.636000e-01   p_joint 7.722000e-01

Outputting figure to mutsig2_images.part000000000110/MYH9.12_6043_10000_1_0.3636_0.7722.png
                gene_name: MYH9
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 25 percent done.
MYH7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.831749e-02	ci left: 8.131401e-01	ci right 8.282726e-01	k: 8208	n:10000
KS ci ratio: 2.057608e-02	ci left: 7.758023e-01	ci right 7.920319e-01	k: 7840	n:10000
MYH7   10000 perm   3 sec   (3580 perm/sec)   p_kst 7.840000e-01   p_cons 8.208000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYH7.11_5960_10000_0.784_0.8208_1.png
                gene_name: MYH7
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
MUC5B
Processing conservation and coverage...
57% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.049003e-02	ci left: 2.278041e-01	ci right 2.445498e-01	k: 2361	n:10000
Cons ci ratio: 1.400872e-02	ci left: 8.804271e-01	ci right 8.929466e-01	k: 8868	n:10000
KS ci ratio: 1.382589e-01	ci left: 6.923436e-02	ci right 7.961519e-02	k: 743	n:10000
MUC5B   10000 perm   4 sec   (2610 perm/sec)   p_kst 7.430000e-02   p_cons 8.868000e-01   p_joint 2.361000e-01

Joint ci ratio: 6.093339e-02	ci left: 1.662002e-01	ci right 1.766956e-01	k: 3428	n:20000
Cons ci ratio: 1.026831e-02	ci left: 8.747556e-01	ci right 8.838338e-01	k: 17587	n:20000
KS ci ratio: 9.633930e-02	ci left: 7.275530e-02	ci right 8.016840e-02	k: 1528	n:20000
MUC5B   20000 perm   8 sec   (2446 perm/sec)   p_kst 7.640000e-02   p_cons 8.793500e-01   p_joint 1.714000e-01

Outputting figure to mutsig2_images.part000000000110/MUC5B.10_17494_20000_0.0764_0.87935_0.1714.png
                gene_name: MUC5B
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 28 percent done.
MYH10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.066371e-02	ci left: 4.717634e-01	ci right 4.914473e-01	k: 4816	n:10000
Cons ci ratio: 5.650599e-02	ci left: 3.156236e-01	ci right 3.340785e-01	k: 3248	n:10000
KS ci ratio: 4.289489e-02	ci left: 4.452043e-01	ci right 4.648220e-01	k: 4550	n:10000
MYH10   10000 perm   2 sec   (4100 perm/sec)   p_kst 4.550000e-01   p_cons 3.248000e-01   p_joint 4.816000e-01

Outputting figure to mutsig2_images.part000000000110/MYH10.10_6091_10000_0.455_0.3248_0.4816.png
                gene_name: MYH10
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 30 percent done.
MYBPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.740610e-02	ci left: 3.963535e-01	ci right 4.157013e-01	k: 4060	n:10000
Cons ci ratio: 7.947409e-03	ci left: 9.566005e-01	ci right 9.643283e-01	k: 9606	n:10000
KS ci ratio: 5.970793e-02	ci left: 2.921179e-01	ci right 3.101981e-01	k: 3011	n:10000
MYBPC1   10000 perm   2 sec   (4583 perm/sec)   p_kst 3.011000e-01   p_cons 9.606000e-01   p_joint 4.060000e-01

Outputting figure to mutsig2_images.part000000000110/MYBPC1.7_3698_10000_0.3011_0.9606_0.406.png
                gene_name: MYBPC1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 31 percent done.
MYEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.934133e-02	ci left: 1.883574e-01	ci right 2.040200e-01	k: 1961	n:10000
Cons ci ratio: 5.153779e-02	ci left: 3.569465e-01	ci right 3.759313e-01	k: 3664	n:10000
KS ci ratio: 8.389257e-02	ci left: 1.716291e-01	ci right 1.867583e-01	k: 1791	n:10000
MYEF2   10000 perm   2 sec   (5174 perm/sec)   p_kst 1.791000e-01   p_cons 3.664000e-01   p_joint 1.961000e-01

Outputting figure to mutsig2_images.part000000000110/MYEF2.7_1871_10000_0.1791_0.3664_0.1961.png
                gene_name: MYEF2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 33 percent done.
MUC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
Cons ci ratio: 4.936750e-02	ci left: 3.770397e-01	ci right 3.962264e-01	k: 3866	n:10000
KS ci ratio: 3.093700e-01	ci left: 1.335536e-02	ci right 1.833248e-02	k: 157	n:10000
MUC2   10000 perm   3 sec   (3597 perm/sec)   p_kst 1.570000e-02   p_cons 3.866000e-01   p_joint 6.190000e-02

Joint ci ratio: 9.644178e-02	ci left: 7.260863e-02	ci right 8.001510e-02	k: 1525	n:20000
Cons ci ratio: 3.449925e-02	ci left: 3.854744e-01	ci right 3.990570e-01	k: 7845	n:20000
KS ci ratio: 2.139961e-01	ci left: 1.473272e-02	ci right 1.830984e-02	k: 329	n:20000
MUC2   20000 perm   6 sec   (3317 perm/sec)   p_kst 1.645000e-02   p_cons 3.922500e-01   p_joint 7.625000e-02

Joint ci ratio: 9.705946e-02	ci left: 4.905845e-02	ci right 5.409551e-02	k: 1546	n:30000
Cons ci ratio: 2.829687e-02	ci left: 3.845746e-01	ci right 3.956467e-01	k: 11703	n:30000
KS ci ratio: 1.754506e-01	ci left: 1.492932e-02	ci right 1.783210e-02	k: 490	n:30000
MUC2   30000 perm   9 sec   (3207 perm/sec)   p_kst 1.633333e-02   p_cons 3.901000e-01   p_joint 5.153333e-02

Joint ci ratio: 9.000385e-02	ci left: 4.323366e-02	ci right 4.733268e-02	k: 1810	n:40000
Cons ci ratio: 2.434093e-02	ci left: 3.885333e-01	ci right 3.981322e-01	k: 15733	n:40000
KS ci ratio: 1.543189e-01	ci left: 1.464879e-02	ci right 1.712221e-02	k: 634	n:40000
MUC2   40000 perm   13 sec   (3136 perm/sec)   p_kst 1.585000e-02   p_cons 3.933250e-01   p_joint 4.525000e-02

Joint ci ratio: 9.877054e-02	ci left: 2.902957e-02	ci right 3.206526e-02	k: 1526	n:50000
Cons ci ratio: 2.300068e-02	ci left: 3.632120e-01	ci right 3.716834e-01	k: 18372	n:50000
KS ci ratio: 1.391675e-01	ci left: 1.453199e-02	ci right 1.672477e-02	k: 780	n:50000
MUC2   50000 perm   16 sec   (3079 perm/sec)   p_kst 1.560000e-02   p_cons 3.674400e-01   p_joint 3.052000e-02

Joint ci ratio: 7.839940e-02	ci left: 3.842963e-02	ci right 4.158173e-02	k: 2399	n:60000
Cons ci ratio: 2.093626e-02	ci left: 3.649209e-01	ci right 3.726585e-01	k: 22127	n:60000
KS ci ratio: 1.229855e-01	ci left: 1.562509e-02	ci right 1.768871e-02	k: 998	n:60000
MUC2   60000 perm   20 sec   (3032 perm/sec)   p_kst 1.663333e-02   p_cons 3.687833e-01   p_joint 3.998333e-02

Joint ci ratio: 6.781581e-02	ci left: 4.401008e-02	ci right 4.711344e-02	k: 3188	n:70000
Cons ci ratio: 1.938915e-02	ci left: 3.650673e-01	ci right 3.722293e-01	k: 25805	n:70000
KS ci ratio: 1.137881e-01	ci left: 1.572198e-02	ci right 1.763267e-02	k: 1166	n:70000
MUC2   70000 perm   23 sec   (2989 perm/sec)   p_kst 1.665714e-02   p_cons 3.686429e-01   p_joint 4.554286e-02

Joint ci ratio: 6.364269e-02	ci left: 4.383226e-02	ci right 4.672583e-02	k: 3621	n:80000
Cons ci ratio: 1.784182e-02	ci left: 3.729537e-01	ci right 3.796803e-01	k: 30105	n:80000
KS ci ratio: 1.055459e-01	ci left: 1.605463e-02	ci right 1.785564e-02	k: 1355	n:80000
MUC2   80000 perm   27 sec   (2952 perm/sec)   p_kst 1.693750e-02   p_cons 3.763125e-01   p_joint 4.526250e-02

Joint ci ratio: 6.175991e-02	ci left: 4.151968e-02	ci right 4.417656e-02	k: 3855	n:90000
Cons ci ratio: 1.683348e-02	ci left: 3.728117e-01	ci right 3.791518e-01	k: 33838	n:90000
KS ci ratio: 1.003664e-01	ci left: 1.582950e-02	ci right 1.751297e-02	k: 1499	n:90000
MUC2   90000 perm   31 sec   (2917 perm/sec)   p_kst 1.665556e-02   p_cons 3.759778e-01   p_joint 4.283333e-02

Joint ci ratio: 6.041413e-02	ci left: 3.917814e-02	ci right 4.162861e-02	k: 4039	n:100000
Cons ci ratio: 1.596586e-02	ci left: 3.730863e-01	ci right 3.791009e-01	k: 37609	n:100000
KS ci ratio: 9.506145e-02	ci left: 1.592457e-02	ci right 1.752364e-02	k: 1671	n:100000
MUC2   100000 perm   35 sec   (2878 perm/sec)   p_kst 1.671000e-02   p_cons 3.760900e-01   p_joint 4.039000e-02

Outputting figure to mutsig2_images.part000000000110/MUC2.6_8642_100000_0.01671_0.37609_0.04039.png
                gene_name: MUC2
               theta_stop: 0.095 
                    nperm: 100000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 34 percent done.
MUC4
Processing conservation and coverage...
62% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.351896e-02	ci left: 7.265354e-01	ci right 7.439273e-01	k: 7353	n:10000
KS ci ratio: 2.596067e-02	ci left: 6.859711e-01	ci right 7.041151e-01	k: 6951	n:10000
MUC4   10000 perm   4 sec   (2796 perm/sec)   p_kst 6.951000e-01   p_cons 7.353000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MUC4.6_15955_10000_0.6951_0.7353_1.png
                gene_name: MUC4
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
MUM1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.626875e-02	ci left: 8.460089e-01	ci right 8.599848e-01	k: 8531	n:10000
KS ci ratio: 1.637241e-02	ci left: 8.443782e-01	ci right 8.584164e-01	k: 8515	n:10000
MUM1L1   10000 perm   2 sec   (5292 perm/sec)   p_kst 8.515000e-01   p_cons 8.531000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MUM1L1.6_2095_10000_0.8515_0.8531_1.png
                gene_name: MUM1L1
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
MURC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.245627e-02	ci left: 2.736903e-01	ci right 2.914365e-01	k: 2825	n:10000
Cons ci ratio: 1.923265e-02	ci left: 7.981111e-01	ci right 8.137103e-01	k: 8060	n:10000
KS ci ratio: 8.798932e-02	ci left: 1.582644e-01	ci right 1.729310e-01	k: 1655	n:10000
MURC   10000 perm   2 sec   (6006 perm/sec)   p_kst 1.655000e-01   p_cons 8.060000e-01   p_joint 2.825000e-01

Outputting figure to mutsig2_images.part000000000110/MURC.6_1103_10000_0.1655_0.806_0.2825.png
                gene_name: MURC
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 39 percent done.
MX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.010159e-02	ci left: 7.837077e-01	ci right 7.997220e-01	k: 7918	n:10000
Cons ci ratio: 3.845652e-02	ci left: 4.996504e-01	ci right 5.193441e-01	k: 5095	n:10000
KS ci ratio: 2.497253e-02	ci left: 7.023076e-01	ci right 7.201692e-01	k: 7113	n:10000
MX1   10000 perm   2 sec   (5061 perm/sec)   p_kst 7.113000e-01   p_cons 5.095000e-01   p_joint 7.918000e-01

Outputting figure to mutsig2_images.part000000000110/MX1.6_2041_10000_0.7113_0.5095_0.7918.png
                gene_name: MX1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 41 percent done.
MYBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.168182e-01	ci left: 9.525826e-02	ci right 1.071752e-01	k: 1011	n:10000
Cons ci ratio: 7.452654e-02	ci left: 2.085598e-01	ci right 2.248056e-01	k: 2166	n:10000
KS ci ratio: 1.244153e-01	ci left: 8.465526e-02	ci right 9.598471e-02	k: 902	n:10000
MYBL1   10000 perm   2 sec   (5156 perm/sec)   p_kst 9.020000e-02   p_cons 2.166000e-01   p_joint 1.011000e-01

Joint ci ratio: 9.336355e-02	ci left: 7.720594e-02	ci right 8.481639e-02	k: 1619	n:20000
Cons ci ratio: 5.214622e-02	ci left: 2.145226e-01	ci right 2.260588e-01	k: 4405	n:20000
KS ci ratio: 8.700051e-02	ci left: 8.812692e-02	ci right 9.619210e-02	k: 1842	n:20000
MYBL1   20000 perm   4 sec   (4661 perm/sec)   p_kst 9.210000e-02   p_cons 2.202500e-01   p_joint 8.095000e-02

Outputting figure to mutsig2_images.part000000000110/MYBL1.6_2323_20000_0.0921_0.22025_0.08095.png
                gene_name: MYBL1
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.085 

Current progress: 42 percent done.
MYH7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.637165e-02	ci left: 6.792186e-01	ci right 6.974716e-01	k: 6884	n:10000
KS ci ratio: 2.928904e-02	ci left: 6.322118e-01	ci right 6.511057e-01	k: 6417	n:10000
MYH7B   10000 perm   2 sec   (4113 perm/sec)   p_kst 6.417000e-01   p_cons 6.884000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYH7B.6_6124_10000_0.6417_0.6884_1.png
                gene_name: MYH7B
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
MYLK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.482342e-02	ci left: 3.289257e-01	ci right 3.475686e-01	k: 3382	n:10000
Cons ci ratio: 3.721421e-02	ci left: 5.160570e-01	ci right 5.357279e-01	k: 5259	n:10000
KS ci ratio: 6.282798e-02	ci left: 2.713139e-01	ci right 2.890143e-01	k: 2801	n:10000
MYLK3   10000 perm   2 sec   (4696 perm/sec)   p_kst 2.801000e-01   p_cons 5.259000e-01   p_joint 3.382000e-01

Outputting figure to mutsig2_images.part000000000110/MYLK3.6_2512_10000_0.2801_0.5259_0.3382.png
                gene_name: MYLK3
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 45 percent done.
MUC13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.299120e-02	ci left: 1.747761e-01	ci right 1.900094e-01	k: 1823	n:10000
Cons ci ratio: 4.447696e-02	ci left: 4.273475e-01	ci right 4.468891e-01	k: 4371	n:10000
KS ci ratio: 1.275454e-01	ci left: 8.077027e-02	ci right 9.187210e-02	k: 862	n:10000
MUC13   10000 perm   2 sec   (5905 perm/sec)   p_kst 8.620000e-02   p_cons 4.371000e-01   p_joint 1.823000e-01

Joint ci ratio: 5.888196e-02	ci left: 1.760316e-01	ci right 1.867612e-01	k: 3627	n:20000
Cons ci ratio: 3.183590e-02	ci left: 4.242719e-01	ci right 4.380481e-01	k: 8623	n:20000
KS ci ratio: 9.111760e-02	ci left: 8.082777e-02	ci right 8.859346e-02	k: 1693	n:20000
MUC13   20000 perm   4 sec   (5275 perm/sec)   p_kst 8.465000e-02   p_cons 4.311500e-01   p_joint 1.813500e-01

Outputting figure to mutsig2_images.part000000000110/MUC13.5_1580_20000_0.08465_0.43115_0.18135.png
                gene_name: MUC13
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 47 percent done.
MUC21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.303319e-02	ci left: 5.749683e-01	ci right 5.943823e-01	k: 5847	n:10000
Cons ci ratio: 1.719268e-02	ci left: 8.313427e-01	ci right 8.458595e-01	k: 8387	n:10000
KS ci ratio: 5.356197e-02	ci left: 3.393548e-01	ci right 3.581334e-01	k: 3487	n:10000
MUC21   10000 perm   2 sec   (5574 perm/sec)   p_kst 3.487000e-01   p_cons 8.387000e-01   p_joint 5.847000e-01

Outputting figure to mutsig2_images.part000000000110/MUC21.5_1713_10000_0.3487_0.8387_0.5847.png
                gene_name: MUC21
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 48 percent done.
MUC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.176252e-02	ci left: 4.584803e-01	ci right 4.781381e-01	k: 4683	n:10000
Cons ci ratio: 1.824276e-02	ci left: 8.143595e-01	ci right 8.294525e-01	k: 8220	n:10000
KS ci ratio: 5.806165e-02	ci left: 3.039169e-01	ci right 3.221921e-01	k: 3130	n:10000
MUC6   10000 perm   2 sec   (4036 perm/sec)   p_kst 3.130000e-01   p_cons 8.220000e-01   p_joint 4.683000e-01

Outputting figure to mutsig2_images.part000000000110/MUC6.5_7452_10000_0.313_0.822_0.4683.png
                gene_name: MUC6
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 50 percent done.
MUM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.380558e-02	ci left: 4.348278e-01	ci right 4.544044e-01	k: 4446	n:10000
Cons ci ratio: 5.537902e-02	ci left: 3.244576e-01	ci right 3.430393e-01	k: 3337	n:10000
KS ci ratio: 5.586816e-02	ci left: 3.205861e-01	ci right 3.391131e-01	k: 3298	n:10000
MUM1   10000 perm   2 sec   (5116 perm/sec)   p_kst 3.298000e-01   p_cons 3.337000e-01   p_joint 4.446000e-01

Outputting figure to mutsig2_images.part000000000110/MUM1.5_2188_10000_0.3298_0.3337_0.4446.png
                gene_name: MUM1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 52 percent done.
MYBL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.308563e-02	ci left: 4.430089e-01	ci right 4.626186e-01	k: 4528	n:10000
Cons ci ratio: 3.776252e-02	ci left: 5.087527e-01	ci right 5.284364e-01	k: 5186	n:10000
KS ci ratio: 5.790008e-02	ci left: 3.051071e-01	ci right 3.234012e-01	k: 3142	n:10000
MYBL2   10000 perm   2 sec   (5752 perm/sec)   p_kst 3.142000e-01   p_cons 5.186000e-01   p_joint 4.528000e-01

Outputting figure to mutsig2_images.part000000000110/MYBL2.5_2159_10000_0.3142_0.5186_0.4528.png
                gene_name: MYBL2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 53 percent done.
MYBPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.505339e-01	ci left: 5.870163e-02	ci right 6.835455e-02	k: 634	n:10000
Cons ci ratio: 3.301551e-01	ci left: 1.160595e-02	ci right 1.628351e-02	k: 138	n:10000
KS ci ratio: 2.347668e-02	ci left: 7.272426e-01	ci right 7.446198e-01	k: 7360	n:10000
MYBPH   10000 perm   2 sec   (5753 perm/sec)   p_kst 7.360000e-01   p_cons 1.380000e-02   p_joint 6.340000e-02

Joint ci ratio: 9.252709e-02	ci left: 7.852716e-02	ci right 8.619478e-02	k: 1646	n:20000
Cons ci ratio: 2.277143e-01	ci left: 1.293634e-02	ci right 1.630694e-02	k: 291	n:20000
KS ci ratio: 1.659649e-02	ci left: 7.299327e-01	ci right 7.421986e-01	k: 14722	n:20000
MYBPH   20000 perm   4 sec   (5145 perm/sec)   p_kst 7.361000e-01   p_cons 1.455000e-02   p_joint 8.230000e-02

Joint ci ratio: 7.317732e-02	ci left: 8.409645e-02	ci right 9.051707e-02	k: 2618	n:30000
Cons ci ratio: 1.761816e-01	ci left: 1.480177e-02	ci right 1.769301e-02	k: 486	n:30000
KS ci ratio: 1.347316e-02	ci left: 7.333199e-01	ci right 7.433005e-01	k: 22150	n:30000
MYBPH   30000 perm   6 sec   (4907 perm/sec)   p_kst 7.383333e-01   p_cons 1.620000e-02   p_joint 8.726667e-02

Joint ci ratio: 6.994755e-02	ci left: 7.024791e-02	ci right 7.536431e-02	k: 2911	n:40000
Cons ci ratio: 1.534616e-01	ci left: 1.481715e-02	ci right 1.730382e-02	k: 641	n:40000
KS ci ratio: 1.171670e-02	ci left: 7.323795e-01	ci right 7.410361e-01	k: 29469	n:40000
MYBPH   40000 perm   8 sec   (4744 perm/sec)   p_kst 7.367250e-01   p_cons 1.602500e-02   p_joint 7.277500e-02

Joint ci ratio: 6.940050e-02	ci left: 5.789462e-02	ci right 6.207665e-02	k: 2998	n:50000
Cons ci ratio: 1.545680e-01	ci left: 1.171764e-02	ci right 1.369954e-02	k: 634	n:50000
KS ci ratio: 1.044261e-02	ci left: 7.342225e-01	ci right 7.419499e-01	k: 36905	n:50000
MYBPH   50000 perm   11 sec   (4621 perm/sec)   p_kst 7.381000e-01   p_cons 1.268000e-02   p_joint 5.996000e-02

Joint ci ratio: 5.826396e-02	ci left: 6.810247e-02	ci right 7.220590e-02	k: 4208	n:60000
Cons ci ratio: 1.411947e-01	ci left: 1.178714e-02	ci right 1.359378e-02	k: 760	n:60000
KS ci ratio: 9.529883e-03	ci left: 7.346794e-01	ci right 7.417309e-01	k: 44293	n:60000
MYBPH   60000 perm   13 sec   (4478 perm/sec)   p_kst 7.382167e-01   p_cons 1.266667e-02   p_joint 7.013333e-02

Joint ci ratio: 5.325414e-02	ci left: 6.992644e-02	ci right 7.376629e-02	k: 5028	n:70000
Cons ci ratio: 1.307086e-01	ci left: 1.185594e-02	ci right 1.352768e-02	k: 887	n:70000
KS ci ratio: 8.814865e-03	ci left: 7.352993e-01	ci right 7.418238e-01	k: 51700	n:70000
MYBPH   70000 perm   16 sec   (4398 perm/sec)   p_kst 7.385714e-01   p_cons 1.267143e-02   p_joint 7.182857e-02

Joint ci ratio: 4.999975e-02	ci left: 6.956324e-02	ci right 7.314292e-02	k: 5707	n:80000
Cons ci ratio: 1.212339e-01	ci left: 1.211738e-02	ci right 1.369324e-02	k: 1031	n:80000
KS ci ratio: 8.246280e-03	ci left: 7.354776e-01	ci right 7.415801e-01	k: 59083	n:80000
MYBPH   80000 perm   19 sec   (4323 perm/sec)   p_kst 7.385375e-01   p_cons 1.288750e-02   p_joint 7.133750e-02

Joint ci ratio: 4.817628e-02	ci left: 6.686905e-02	ci right 7.018104e-02	k: 6166	n:90000
Cons ci ratio: 1.149543e-01	ci left: 1.202180e-02	ci right 1.349874e-02	k: 1147	n:90000
KS ci ratio: 7.771175e-03	ci left: 7.358276e-01	ci right 7.415792e-01	k: 66484	n:90000
MYBPH   90000 perm   21 sec   (4252 perm/sec)   p_kst 7.387111e-01   p_cons 1.274444e-02   p_joint 6.851111e-02

Joint ci ratio: 4.590294e-02	ci left: 6.640766e-02	ci right 6.953745e-02	k: 6796	n:100000
Cons ci ratio: 1.000796e-01	ci left: 1.435324e-02	ci right 1.587507e-02	k: 1510	n:100000
KS ci ratio: 7.364387e-03	ci left: 7.363965e-01	ci right 7.418496e-01	k: 73913	n:100000
MYBPH   100000 perm   24 sec   (4183 perm/sec)   p_kst 7.391300e-01   p_cons 1.510000e-02   p_joint 6.796000e-02

Joint ci ratio: 4.330464e-02	ci left: 6.782402e-02	ci right 7.083510e-02	k: 7625	n:110000
Cons ci ratio: 9.554192e-02	ci left: 1.435208e-02	ci right 1.580092e-02	k: 1657	n:110000
KS ci ratio: 7.026850e-03	ci left: 7.362388e-01	ci right 7.414395e-01	k: 81273	n:110000
MYBPH   110000 perm   27 sec   (4117 perm/sec)   p_kst 7.388455e-01   p_cons 1.506364e-02   p_joint 6.931818e-02

Outputting figure to mutsig2_images.part000000000110/MYBPH.5_1474_110000_0.73885_0.015064_0.069318.png
                gene_name: MYBPH
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.071 

Current progress: 55 percent done.
MUC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.488470e-02	ci left: 3.284292e-01	ci right 3.470654e-01	k: 3377	n:10000
Cons ci ratio: 2.705609e-02	ci left: 6.680363e-01	ci right 6.864603e-01	k: 6773	n:10000
KS ci ratio: 8.624746e-02	ci left: 1.637654e-01	ci right 1.786266e-01	k: 1711	n:10000
MUC15   10000 perm   2 sec   (6094 perm/sec)   p_kst 1.711000e-01   p_cons 6.773000e-01   p_joint 3.377000e-01

Outputting figure to mutsig2_images.part000000000110/MUC15.4_1102_10000_0.1711_0.6773_0.3377.png
                gene_name: MUC15
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 56 percent done.
MUC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.485708e-02	ci left: 7.042245e-01	ci right 7.220512e-01	k: 7132	n:10000
Cons ci ratio: 5.343254e-02	ci left: 3.404477e-01	ci right 3.592399e-01	k: 3498	n:10000
KS ci ratio: 7.684031e-02	ci left: 1.985040e-01	ci right 2.144674e-01	k: 2064	n:10000
MUC7   10000 perm   2 sec   (5792 perm/sec)   p_kst 2.064000e-01   p_cons 3.498000e-01   p_joint 7.132000e-01

Outputting figure to mutsig2_images.part000000000110/MUC7.4_1142_10000_0.2064_0.3498_0.7132.png
                gene_name: MUC7
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 58 percent done.
MUL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.056883e-02	ci left: 6.122110e-01	ci right 6.313180e-01	k: 6218	n:10000
Cons ci ratio: 3.306720e-02	ci left: 5.744668e-01	ci right 5.938842e-01	k: 5842	n:10000
KS ci ratio: 5.745976e-02	ci left: 3.083805e-01	ci right 3.267259e-01	k: 3175	n:10000
MUL1   10000 perm   2 sec   (5850 perm/sec)   p_kst 3.175000e-01   p_cons 5.842000e-01   p_joint 6.218000e-01

Outputting figure to mutsig2_images.part000000000110/MUL1.4_1075_10000_0.3175_0.5842_0.6218.png
                gene_name: MUL1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 59 percent done.
MUSK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.278258e-02	ci left: 7.388637e-01	ci right 7.559919e-01	k: 7475	n:10000
Cons ci ratio: 3.366282e-02	ci left: 5.657417e-01	ci right 5.852143e-01	k: 5755	n:10000
KS ci ratio: 3.033536e-02	ci left: 6.158280e-01	ci right 6.348989e-01	k: 6254	n:10000
MUSK   10000 perm   2 sec   (5232 perm/sec)   p_kst 6.254000e-01   p_cons 5.755000e-01   p_joint 7.475000e-01

Outputting figure to mutsig2_images.part000000000110/MUSK.4_2702_10000_0.6254_0.5755_0.7475.png
                gene_name: MUSK
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 61 percent done.
MUT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.916815e-02	ci left: 6.341223e-01	ci right 6.529940e-01	k: 6436	n:10000
Cons ci ratio: 3.892855e-02	ci left: 4.935506e-01	ci right 5.132474e-01	k: 5034	n:10000
KS ci ratio: 5.258607e-02	ci left: 3.477017e-01	ci right 3.665816e-01	k: 3571	n:10000
MUT   10000 perm   2 sec   (5216 perm/sec)   p_kst 3.571000e-01   p_cons 5.034000e-01   p_joint 6.436000e-01

Outputting figure to mutsig2_images.part000000000110/MUT.4_2301_10000_0.3571_0.5034_0.6436.png
                gene_name: MUT
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 62 percent done.
MVP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.103091e-02	ci left: 7.682051e-01	ci right 7.846336e-01	k: 7765	n:10000
KS ci ratio: 1.967418e-02	ci left: 7.908060e-01	ci right 8.066196e-01	k: 7988	n:10000
MVP   10000 perm   2 sec   (5388 perm/sec)   p_kst 7.988000e-01   p_cons 7.765000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MVP.4_2738_10000_0.7988_0.7765_1.png
                gene_name: MVP
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
MYBBP1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.504549e-02	ci left: 7.010970e-01	ci right 7.189804e-01	k: 7101	n:10000
KS ci ratio: 1.581194e-02	ci left: 8.531464e-01	ci right 8.668432e-01	k: 8601	n:10000
MYBBP1A   10000 perm   2 sec   (4376 perm/sec)   p_kst 8.601000e-01   p_cons 7.101000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYBBP1A.4_4131_10000_0.8601_0.7101_1.png
                gene_name: MYBBP1A
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
MYBPC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.280433e-02	ci left: 3.458134e-01	ci right 3.646710e-01	k: 3552	n:10000
Cons ci ratio: 3.195656e-02	ci left: 5.910228e-01	ci right 6.103185e-01	k: 6007	n:10000
KS ci ratio: 8.667538e-02	ci left: 1.623899e-01	ci right 1.772030e-01	k: 1697	n:10000
MYBPC2   10000 perm   2 sec   (5114 perm/sec)   p_kst 1.697000e-01   p_cons 6.007000e-01   p_joint 3.552000e-01

Outputting figure to mutsig2_images.part000000000110/MYBPC2.4_3538_10000_0.1697_0.6007_0.3552.png
                gene_name: MYBPC2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 67 percent done.
MYCBPAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.369728e-02	ci left: 5.652404e-01	ci right 5.847159e-01	k: 5750	n:10000
Cons ci ratio: 2.118228e-02	ci left: 7.656735e-01	ci right 7.821666e-01	k: 7740	n:10000
KS ci ratio: 5.749955e-02	ci left: 3.080829e-01	ci right 3.264237e-01	k: 3172	n:10000
MYCBPAP   10000 perm   2 sec   (5084 perm/sec)   p_kst 3.172000e-01   p_cons 7.740000e-01   p_joint 5.750000e-01

Outputting figure to mutsig2_images.part000000000110/MYCBPAP.4_3031_10000_0.3172_0.774_0.575.png
                gene_name: MYCBPAP
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 69 percent done.
MYF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.136222e-02	ci left: 4.632734e-01	ci right 4.829423e-01	k: 4731	n:10000
Cons ci ratio: 3.950098e-02	ci left: 4.862528e-01	ci right 5.059495e-01	k: 4961	n:10000
KS ci ratio: 7.941687e-02	ci left: 1.880620e-01	ci right 2.037156e-01	k: 1958	n:10000
MYF5   10000 perm   2 sec   (5846 perm/sec)   p_kst 1.958000e-01   p_cons 4.961000e-01   p_joint 4.731000e-01

Outputting figure to mutsig2_images.part000000000110/MYF5.4_780_10000_0.1958_0.4961_0.4731.png
                gene_name: MYF5
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 70 percent done.
MX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.913147e-02	ci left: 4.909512e-01	ci right 5.106484e-01	k: 5008	n:10000
Cons ci ratio: 3.985010e-02	ci left: 4.818551e-01	ci right 5.015497e-01	k: 4917	n:10000
KS ci ratio: 5.703829e-02	ci left: 3.115552e-01	ci right 3.299493e-01	k: 3207	n:10000
MX2   10000 perm   2 sec   (5766 perm/sec)   p_kst 3.207000e-01   p_cons 4.917000e-01   p_joint 5.008000e-01

Outputting figure to mutsig2_images.part000000000110/MX2.3_2200_10000_0.3207_0.4917_0.5008.png
                gene_name: MX2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 72 percent done.
MXD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.194651e-02	ci left: 2.205969e-01	ci right 2.371614e-01	k: 2288	n:10000
Cons ci ratio: 1.918961e-02	ci left: 7.988215e-01	ci right 8.143995e-01	k: 8067	n:10000
KS ci ratio: 9.671176e-02	ci left: 1.342342e-01	ci right 1.479756e-01	k: 1410	n:10000
MXD1   10000 perm   2 sec   (6354 perm/sec)   p_kst 1.410000e-01   p_cons 8.067000e-01   p_joint 2.288000e-01

Outputting figure to mutsig2_images.part000000000110/MXD1.3_690_10000_0.141_0.8067_0.2288.png
                gene_name: MXD1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 73 percent done.
MXI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.088077e-01	ci left: 4.407042e-03	ci right 7.491475e-03	k: 58	n:10000
Cons ci ratio: 4.846095e-01	ci left: 4.932166e-03	ci right 8.165407e-03	k: 64	n:10000
KS ci ratio: 1.331998e-01	ci left: 7.436791e-02	ci right 8.507844e-02	k: 796	n:10000
MXI1   10000 perm   2 sec   (6387 perm/sec)   p_kst 7.960000e-02   p_cons 6.400000e-03   p_joint 5.800000e-03

Joint ci ratio: 1.684891e-01	ci left: 2.412627e-02	ci right 2.861286e-02	k: 526	n:20000
Cons ci ratio: 3.597902e-01	ci left: 4.840441e-03	ci right 7.006997e-03	k: 117	n:20000
KS ci ratio: 9.219200e-02	ci left: 7.906552e-02	ci right 8.675625e-02	k: 1657	n:20000
MXI1   20000 perm   4 sec   (5635 perm/sec)   p_kst 8.285000e-02   p_cons 5.850000e-03   p_joint 2.630000e-02

Joint ci ratio: 2.039269e-01	ci left: 1.092521e-02	ci right 1.343725e-02	k: 364	n:30000
Cons ci ratio: 2.946082e-01	ci left: 5.003063e-03	ci right 6.761370e-03	k: 175	n:30000
KS ci ratio: 7.623155e-02	ci left: 7.790390e-02	ci right 8.411086e-02	k: 2429	n:30000
MXI1   30000 perm   6 sec   (5343 perm/sec)   p_kst 8.096667e-02   p_cons 5.833333e-03   p_joint 1.213333e-02

Joint ci ratio: 1.860596e-01	ci left: 9.953278e-03	ci right 1.201864e-02	k: 438	n:40000
Cons ci ratio: 2.653809e-01	ci left: 4.705407e-03	ci right 6.167803e-03	k: 216	n:40000
KS ci ratio: 6.609641e-02	ci left: 7.814728e-02	ci right 8.351376e-02	k: 3232	n:40000
MXI1   40000 perm   8 sec   (5150 perm/sec)   p_kst 8.080000e-02   p_cons 5.400000e-03   p_joint 1.095000e-02

Joint ci ratio: 1.348472e-01	ci left: 1.549822e-02	ci right 1.775840e-02	k: 830	n:50000
Cons ci ratio: 2.406192e-01	ci left: 4.644831e-03	ci right 5.933632e-03	k: 263	n:50000
KS ci ratio: 6.103921e-02	ci left: 7.386936e-02	ci right 7.853998e-02	k: 3809	n:50000
MXI1   50000 perm   10 sec   (5026 perm/sec)   p_kst 7.618000e-02   p_cons 5.260000e-03   p_joint 1.660000e-02

Joint ci ratio: 1.330226e-01	ci left: 1.331688e-02	ci right 1.523053e-02	k: 855	n:60000
Cons ci ratio: 2.199340e-01	ci left: 4.687462e-03	ci right 5.861174e-03	k: 315	n:60000
KS ci ratio: 5.618797e-02	ci left: 7.292118e-02	ci right 7.715337e-02	k: 4501	n:60000
MXI1   60000 perm   12 sec   (4901 perm/sec)   p_kst 7.501667e-02   p_cons 5.250000e-03   p_joint 1.425000e-02

Joint ci ratio: 1.283856e-01	ci left: 1.229844e-02	ci right 1.399941e-02	k: 919	n:70000
Cons ci ratio: 2.029748e-01	ci left: 4.762007e-03	ci right 5.851048e-03	k: 370	n:70000
KS ci ratio: 5.209152e-02	ci left: 7.288994e-02	ci right 7.680254e-02	k: 5238	n:70000
MXI1   70000 perm   15 sec   (4797 perm/sec)   p_kst 7.482857e-02   p_cons 5.285714e-03   p_joint 1.312857e-02

Joint ci ratio: 1.228108e-01	ci left: 1.180218e-02	ci right 1.335847e-02	k: 1005	n:80000
Cons ci ratio: 1.916923e-01	ci left: 4.701466e-03	ci right 5.709929e-03	k: 415	n:80000
KS ci ratio: 4.878194e-02	ci left: 7.286266e-02	ci right 7.651825e-02	k: 5974	n:80000
MXI1   80000 perm   17 sec   (4700 perm/sec)   p_kst 7.467500e-02   p_cons 5.187500e-03   p_joint 1.256250e-02

Joint ci ratio: 1.393881e-01	ci left: 8.103600e-03	ci right 9.328381e-03	k: 783	n:90000
Cons ci ratio: 1.805355e-01	ci left: 4.740560e-03	ci right 5.691760e-03	k: 468	n:90000
KS ci ratio: 4.596576e-02	ci left: 7.304551e-02	ci right 7.649307e-02	k: 6728	n:90000
MXI1   90000 perm   20 sec   (4610 perm/sec)   p_kst 7.475556e-02   p_cons 5.200000e-03   p_joint 8.700000e-03

Joint ci ratio: 1.382984e-01	ci left: 7.418540e-03	ci right 8.530283e-03	k: 796	n:100000
Cons ci ratio: 1.786790e-01	ci left: 4.361931e-03	ci right 5.227177e-03	k: 478	n:100000
KS ci ratio: 4.381527e-02	ci left: 7.248392e-02	ci right 7.574084e-02	k: 7410	n:100000
MXI1   100000 perm   22 sec   (4525 perm/sec)   p_kst 7.410000e-02   p_cons 4.780000e-03   p_joint 7.960000e-03

Joint ci ratio: 1.318397e-01	ci left: 7.446840e-03	ci right 8.506621e-03	k: 876	n:110000
Cons ci ratio: 1.697017e-01	ci left: 4.417529e-03	ci right 5.245274e-03	k: 530	n:110000
KS ci ratio: 4.162505e-02	ci left: 7.305399e-02	ci right 7.616848e-02	k: 8206	n:110000
MXI1   110000 perm   25 sec   (4418 perm/sec)   p_kst 7.460000e-02   p_cons 4.818182e-03   p_joint 7.963636e-03

Joint ci ratio: 1.338980e-01	ci left: 6.616613e-03	ci right 7.574106e-03	k: 850	n:120000
Cons ci ratio: 1.639442e-01	ci left: 4.352837e-03	ci right 5.138058e-03	k: 568	n:120000
KS ci ratio: 3.985319e-02	ci left: 7.311953e-02	ci right 7.610106e-02	k: 8952	n:120000
MXI1   120000 perm   28 sec   (4332 perm/sec)   p_kst 7.460000e-02   p_cons 4.733333e-03   p_joint 7.083333e-03

Joint ci ratio: 1.078829e-01	ci left: 9.511152e-03	ci right 1.060318e-02	k: 1306	n:130000
Cons ci ratio: 1.569274e-01	ci left: 4.401957e-03	ci right 5.158854e-03	k: 620	n:130000
KS ci ratio: 3.823454e-02	ci left: 7.337562e-02	ci right 7.624338e-02	k: 9724	n:130000
MXI1   130000 perm   31 sec   (4255 perm/sec)   p_kst 7.480000e-02   p_cons 4.769231e-03   p_joint 1.004615e-02

Joint ci ratio: 9.190257e-02	ci left: 1.223864e-02	ci right 1.342452e-02	k: 1795	n:140000
Cons ci ratio: 1.514205e-01	ci left: 4.403430e-03	ci right 5.131601e-03	k: 666	n:140000
KS ci ratio: 3.677750e-02	ci left: 7.367511e-02	ci right 7.644252e-02	k: 10507	n:140000
MXI1   140000 perm   34 sec   (4171 perm/sec)   p_kst 7.505000e-02   p_cons 4.757143e-03   p_joint 1.282143e-02

Joint ci ratio: 8.943084e-02	ci left: 1.208076e-02	ci right 1.321820e-02	k: 1896	n:150000
Cons ci ratio: 1.468699e-01	ci left: 4.379415e-03	ci right 5.079940e-03	k: 708	n:150000
KS ci ratio: 3.550585e-02	ci left: 7.381744e-02	ci right 7.649235e-02	k: 11272	n:150000
MXI1   150000 perm   37 sec   (4105 perm/sec)   p_kst 7.514667e-02   p_cons 4.720000e-03   p_joint 1.264000e-02

Joint ci ratio: 9.467990e-02	ci left: 1.009786e-02	ci right 1.110749e-02	k: 1695	n:160000
Cons ci ratio: 1.420427e-01	ci left: 4.400888e-03	ci right 5.079750e-03	k: 757	n:160000
KS ci ratio: 3.437614e-02	ci left: 7.386900e-02	ci right 7.645892e-02	k: 12025	n:160000
MXI1   160000 perm   40 sec   (4043 perm/sec)   p_kst 7.515625e-02   p_cons 4.731250e-03   p_joint 1.059375e-02

Joint ci ratio: 9.653743e-02	ci left: 9.141921e-03	ci right 1.007492e-02	k: 1632	n:170000
Cons ci ratio: 1.384400e-01	ci left: 4.369046e-03	ci right 5.024492e-03	k: 797	n:170000
KS ci ratio: 3.329572e-02	ci left: 7.413167e-02	ci right 7.664754e-02	k: 12815	n:170000
MXI1   170000 perm   43 sec   (3984 perm/sec)   p_kst 7.538235e-02   p_cons 4.688235e-03   p_joint 9.600000e-03

Joint ci ratio: 9.521920e-02	ci left: 8.883407e-03	ci right 9.776948e-03	k: 1678	n:180000
Cons ci ratio: 1.342160e-01	ci left: 4.399997e-03	ci right 5.038338e-03	k: 848	n:180000
KS ci ratio: 3.235619e-02	ci left: 7.417328e-02	ci right 7.661820e-02	k: 13570	n:180000
MXI1   180000 perm   46 sec   (3925 perm/sec)   p_kst 7.538889e-02   p_cons 4.711111e-03   p_joint 9.322222e-03

Joint ci ratio: 8.865876e-02	ci left: 9.732464e-03	ci right 1.064047e-02	k: 1934	n:190000
Cons ci ratio: 1.303565e-01	ci left: 4.427961e-03	ci right 5.050456e-03	k: 899	n:190000
KS ci ratio: 3.146464e-02	ci left: 7.433158e-02	ci right 7.671297e-02	k: 14348	n:190000
MXI1   190000 perm   49 sec   (3868 perm/sec)   p_kst 7.551579e-02   p_cons 4.731579e-03   p_joint 1.017895e-02

Joint ci ratio: 7.797146e-02	ci left: 1.199314e-02	ci right 1.297107e-02	k: 2495	n:200000
Cons ci ratio: 1.272157e-01	ci left: 4.424313e-03	ci right 5.030179e-03	k: 944	n:200000
KS ci ratio: 3.067367e-02	ci left: 7.433586e-02	ci right 7.665646e-02	k: 15098	n:200000
MXI1   200000 perm   52 sec   (3810 perm/sec)   p_kst 7.549000e-02   p_cons 4.720000e-03   p_joint 1.247500e-02

Joint ci ratio: 8.507152e-02	ci left: 9.583499e-03	ci right 1.043963e-02	k: 2101	n:210000
Cons ci ratio: 1.241655e-01	ci left: 4.430405e-03	ci right 5.021489e-03	k: 991	n:210000
KS ci ratio: 3.015509e-02	ci left: 7.335206e-02	ci right 7.560256e-02	k: 15639	n:210000
MXI1   210000 perm   56 sec   (3754 perm/sec)   p_kst 7.447143e-02   p_cons 4.719048e-03   p_joint 1.000476e-02

Joint ci ratio: 8.675233e-02	ci left: 8.796354e-03	ci right 9.598476e-03	k: 2022	n:220000
Cons ci ratio: 1.208581e-01	ci left: 4.471368e-03	ci right 5.050890e-03	k: 1046	n:220000
KS ci ratio: 2.949170e-02	ci left: 7.323905e-02	ci right 7.543581e-02	k: 16353	n:220000
MXI1   220000 perm   59 sec   (3703 perm/sec)   p_kst 7.433182e-02   p_cons 4.754545e-03   p_joint 9.190909e-03

Joint ci ratio: 8.755926e-02	ci left: 8.260693e-03	ci right 9.021332e-03	k: 1986	n:230000
Cons ci ratio: 1.182337e-01	ci left: 4.475198e-03	ci right 5.041741e-03	k: 1093	n:230000
KS ci ratio: 2.889036e-02	ci left: 7.304136e-02	ci right 7.518678e-02	k: 17045	n:230000
MXI1   230000 perm   63 sec   (3653 perm/sec)   p_kst 7.410870e-02   p_cons 4.752174e-03   p_joint 8.634783e-03

Joint ci ratio: 8.502333e-02	ci left: 8.405735e-03	ci right 9.156200e-03	k: 2106	n:240000
Cons ci ratio: 1.152164e-01	ci left: 4.523349e-03	ci right 5.080380e-03	k: 1151	n:240000
KS ci ratio: 2.824020e-02	ci left: 7.326625e-02	ci right 7.536905e-02	k: 17835	n:240000
MXI1   240000 perm   67 sec   (3602 perm/sec)   p_kst 7.431250e-02   p_cons 4.795833e-03   p_joint 8.775000e-03

Joint ci ratio: 8.366763e-02	ci left: 8.339672e-03	ci right 9.071786e-03	k: 2175	n:250000
Cons ci ratio: 1.128413e-01	ci left: 4.532826e-03	ci right 5.078752e-03	k: 1200	n:250000
KS ci ratio: 2.762162e-02	ci left: 7.352530e-02	ci right 7.558858e-02	k: 18638	n:250000
MXI1   250000 perm   70 sec   (3551 perm/sec)   p_kst 7.455200e-02   p_cons 4.800000e-03   p_joint 8.700000e-03

Joint ci ratio: 8.215353e-02	ci left: 8.323991e-03	ci right 9.040872e-03	k: 2256	n:260000
Cons ci ratio: 1.107409e-01	ci left: 4.530462e-03	ci right 5.065284e-03	k: 1246	n:260000
KS ci ratio: 2.709698e-02	ci left: 7.348586e-02	ci right 7.550825e-02	k: 19368	n:260000
MXI1   260000 perm   74 sec   (3501 perm/sec)   p_kst 7.449231e-02   p_cons 4.792308e-03   p_joint 8.676923e-03

Joint ci ratio: 8.158562e-02	ci left: 8.131754e-03	ci right 8.827006e-03	k: 2288	n:270000
Cons ci ratio: 1.088806e-01	ci left: 4.517551e-03	ci right 5.041315e-03	k: 1289	n:270000
KS ci ratio: 2.660400e-02	ci left: 7.343497e-02	ci right 7.541862e-02	k: 20094	n:270000
MXI1   270000 perm   78 sec   (3440 perm/sec)   p_kst 7.442222e-02   p_cons 4.774074e-03   p_joint 8.474074e-03

Joint ci ratio: 8.852931e-02	ci left: 6.645612e-03	ci right 7.264659e-03	k: 1946	n:280000
Cons ci ratio: 1.068696e-01	ci left: 4.526489e-03	ci right 5.040986e-03	k: 1338	n:280000
KS ci ratio: 2.614106e-02	ci left: 7.336672e-02	ci right 7.531353e-02	k: 20814	n:280000
MXI1   280000 perm   82 sec   (3396 perm/sec)   p_kst 7.433571e-02   p_cons 4.778571e-03   p_joint 6.950000e-03

Joint ci ratio: 8.854001e-02	ci left: 6.416420e-03	ci right 7.014192e-03	k: 1946	n:290000
Cons ci ratio: 1.049660e-01	ci left: 4.534894e-03	ci right 5.040598e-03	k: 1387	n:290000
KS ci ratio: 2.569824e-02	ci left: 7.332060e-02	ci right 7.523274e-02	k: 21539	n:290000
MXI1   290000 perm   87 sec   (3343 perm/sec)   p_kst 7.427241e-02   p_cons 4.782759e-03   p_joint 6.710345e-03

Joint ci ratio: 8.563234e-02	ci left: 6.639512e-03	ci right 7.236739e-03	k: 2080	n:300000
Cons ci ratio: 1.037426e-01	ci left: 4.490854e-03	ci right 4.985455e-03	k: 1420	n:300000
KS ci ratio: 2.526983e-02	ci left: 7.331759e-02	ci right 7.519731e-02	k: 22276	n:300000
MXI1   300000 perm   91 sec   (3302 perm/sec)   p_kst 7.425333e-02   p_cons 4.733333e-03   p_joint 6.933333e-03

Joint ci ratio: 7.553555e-02	ci left: 8.287440e-03	ci right 8.941151e-03	k: 2669	n:310000
Cons ci ratio: 1.018943e-01	ci left: 4.509418e-03	ci right 4.996685e-03	k: 1472	n:310000
KS ci ratio: 2.484992e-02	ci left: 7.338237e-02	ci right 7.523204e-02	k: 23034	n:310000
MXI1   310000 perm   95 sec   (3262 perm/sec)   p_kst 7.430323e-02   p_cons 4.748387e-03   p_joint 8.609677e-03

Joint ci ratio: 7.751696e-02	ci left: 7.620683e-03	ci right 8.238278e-03	k: 2536	n:320000
Cons ci ratio: 1.006063e-01	ci left: 4.484239e-03	ci right 4.962298e-03	k: 1510	n:320000
KS ci ratio: 2.444527e-02	ci left: 7.347132e-02	ci right 7.529265e-02	k: 23801	n:320000
MXI1   320000 perm   99 sec   (3225 perm/sec)   p_kst 7.437813e-02   p_cons 4.718750e-03   p_joint 7.925000e-03

Joint ci ratio: 7.619091e-02	ci left: 7.654272e-03	ci right 8.263507e-03	k: 2625	n:330000
Cons ci ratio: 9.914123e-02	ci left: 4.481310e-03	ci right 4.951695e-03	k: 1555	n:330000
KS ci ratio: 2.405500e-02	ci left: 7.358222e-02	ci right 7.537678e-02	k: 24577	n:330000
MXI1   330000 perm   104 sec   (3180 perm/sec)   p_kst 7.447576e-02   p_cons 4.712121e-03   p_joint 7.954545e-03

Outputting figure to mutsig2_images.part000000000110/MXI1.3_989_330000_0.074476_0.0047121_0.0079545.png
                gene_name: MXI1
               theta_stop: 0.099 
                    nperm: 330000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.0047 
      ci_cons_bounds_left: 0.0045 
     ci_cons_bounds_right: 0.0050 
                  p_joint: 0.0080 
     ci_joint_bounds_left: 0.0077 
    ci_joint_bounds_right: 0.0083 

Current progress: 75 percent done.
MYB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.994737e-02	ci left: 2.305695e-01	ci right 2.473828e-01	k: 2389	n:10000
Cons ci ratio: 5.992136e-02	ci left: 2.906312e-01	ci right 3.086857e-01	k: 2996	n:10000
KS ci ratio: 1.173999e-01	ci left: 9.438193e-02	ci right 1.062521e-01	k: 1002	n:10000
MYB   10000 perm   2 sec   (5690 perm/sec)   p_kst 1.002000e-01   p_cons 2.996000e-01   p_joint 2.389000e-01

Joint ci ratio: 4.948793e-02	ci left: 2.328549e-01	ci right 2.447211e-01	k: 4775	n:20000
Cons ci ratio: 4.244171e-02	ci left: 2.926100e-01	ci right 3.053485e-01	k: 5979	n:20000
KS ci ratio: 8.324667e-02	ci left: 9.563031e-02	ci right 1.039865e-01	k: 1995	n:20000
MYB   20000 perm   4 sec   (5055 perm/sec)   p_kst 9.975000e-02   p_cons 2.989500e-01   p_joint 2.387500e-01

Outputting figure to mutsig2_images.part000000000110/MYB.3_2350_20000_0.09975_0.29895_0.23875.png
                gene_name: MYB
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.100 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 77 percent done.
MYBPC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.330595e-02	ci left: 5.709563e-01	ci right 5.903967e-01	k: 5807	n:10000
KS ci ratio: 1.820536e-02	ci left: 8.149692e-01	ci right 8.300424e-01	k: 8226	n:10000
MYBPC3   10000 perm   2 sec   (5122 perm/sec)   p_kst 8.226000e-01   p_cons 5.807000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYBPC3.3_3954_10000_0.8226_0.5807_1.png
                gene_name: MYBPC3
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
MYBPHL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.831517e-02	ci left: 6.477018e-01	ci right 6.664067e-01	k: 6571	n:10000
Cons ci ratio: 7.228335e-03	ci left: 9.635202e-01	ci right 9.706043e-01	k: 9672	n:10000
KS ci ratio: 4.246508e-02	ci left: 4.501944e-01	ci right 4.698289e-01	k: 4600	n:10000
MYBPHL   10000 perm   2 sec   (6293 perm/sec)   p_kst 4.600000e-01   p_cons 9.672000e-01   p_joint 6.571000e-01

Outputting figure to mutsig2_images.part000000000110/MYBPHL.3_1097_10000_0.46_0.9672_0.6571.png
                gene_name: MYBPHL
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 80 percent done.
MYCN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.636081e-02	ci left: 4.071122e-01	ci right 4.265363e-01	k: 4168	n:10000
Cons ci ratio: 1.528606e-01	ci left: 5.696592e-02	ci right 6.649137e-02	k: 616	n:10000
KS ci ratio: 3.167093e-02	ci left: 5.953393e-01	ci right 6.145996e-01	k: 6050	n:10000
MYCN   10000 perm   2 sec   (6079 perm/sec)   p_kst 6.050000e-01   p_cons 6.160000e-02   p_joint 4.168000e-01

Joint ci ratio: 4.287597e-02	ci left: 2.883868e-01	ci right 3.010730e-01	k: 5894	n:20000
Cons ci ratio: 1.132152e-01	ci left: 5.333981e-02	ci right 5.978987e-02	k: 1130	n:20000
KS ci ratio: 2.145137e-02	ci left: 6.186491e-01	ci right 6.321144e-01	k: 12508	n:20000
MYCN   20000 perm   4 sec   (5216 perm/sec)   p_kst 6.254000e-01   p_cons 5.650000e-02   p_joint 2.947000e-01

Joint ci ratio: 3.440443e-02	ci left: 2.968073e-01	ci right 3.072311e-01	k: 9060	n:30000
Cons ci ratio: 9.414350e-02	ci left: 5.205562e-02	ci right 5.723105e-02	k: 1638	n:30000
KS ci ratio: 1.754392e-02	ci left: 6.191255e-01	ci right 6.301170e-01	k: 18739	n:30000
MYCN   30000 perm   6 sec   (4894 perm/sec)   p_kst 6.246333e-01   p_cons 5.460000e-02   p_joint 3.020000e-01

Outputting figure to mutsig2_images.part000000000110/MYCN.3_1403_30000_0.62463_0.0546_0.302.png
                gene_name: MYCN
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 81 percent done.
MYCT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.161556e-02	ci left: 3.562506e-01	ci right 3.752277e-01	k: 3657	n:10000
Cons ci ratio: 1.086341e-01	ci left: 1.089077e-01	ci right 1.215175e-01	k: 1151	n:10000
KS ci ratio: 6.247168e-02	ci left: 2.735913e-01	ci right 2.913356e-01	k: 2824	n:10000
MYCT1   10000 perm   2 sec   (6350 perm/sec)   p_kst 2.824000e-01   p_cons 1.151000e-01   p_joint 3.657000e-01

Joint ci ratio: 2.993632e-02	ci left: 4.546220e-01	ci right 4.684892e-01	k: 9231	n:20000
Cons ci ratio: 7.725382e-02	ci left: 1.096268e-01	ci right 1.184858e-01	k: 2280	n:20000
KS ci ratio: 4.416894e-02	ci left: 2.762674e-01	ci right 2.887959e-01	k: 5650	n:20000
MYCT1   20000 perm   4 sec   (5629 perm/sec)   p_kst 2.825000e-01   p_cons 1.140000e-01   p_joint 4.615500e-01

Outputting figure to mutsig2_images.part000000000110/MYCT1.3_716_20000_0.2825_0.114_0.46155.png
                gene_name: MYCT1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 83 percent done.
MYL6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.016747e-01	ci left: 1.227823e-01	ci right 1.360344e-01	k: 1293	n:10000
Cons ci ratio: 3.543166e-02	ci left: 5.404864e-01	ci right 5.600843e-01	k: 5503	n:10000
KS ci ratio: 1.428763e-01	ci left: 6.497832e-02	ci right 7.507390e-02	k: 699	n:10000
MYL6B   10000 perm   2 sec   (6315 perm/sec)   p_kst 6.990000e-02   p_cons 5.503000e-01   p_joint 1.293000e-01

Joint ci ratio: 6.437454e-02	ci left: 1.513418e-01	ci right 1.614583e-01	k: 3127	n:20000
Cons ci ratio: 2.499238e-02	ci left: 5.446253e-01	ci right 5.584597e-01	k: 11031	n:20000
KS ci ratio: 1.027783e-01	ci left: 6.430502e-02	ci right 7.132127e-02	k: 1355	n:20000
MYL6B   20000 perm   4 sec   (5646 perm/sec)   p_kst 6.775000e-02   p_cons 5.515500e-01   p_joint 1.563500e-01

Joint ci ratio: 5.609263e-02	ci left: 1.360589e-01	ci right 1.439443e-01	k: 4199	n:30000
Cons ci ratio: 2.046100e-02	ci left: 5.445827e-01	ci right 5.558742e-01	k: 16507	n:30000
KS ci ratio: 8.354483e-02	ci left: 6.550338e-02	ci right 7.124721e-02	k: 2050	n:30000
MYL6B   30000 perm   6 sec   (5387 perm/sec)   p_kst 6.833333e-02   p_cons 5.502333e-01   p_joint 1.399667e-01

Outputting figure to mutsig2_images.part000000000110/MYL6B.3_651_30000_0.068333_0.55023_0.13997.png
                gene_name: MYL6B
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 84 percent done.
MYLK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.004086e-02	ci left: 9.336122e-01	ci right 9.431305e-01	k: 9385	n:10000
Cons ci ratio: 3.362151e-02	ci left: 5.663433e-01	ci right 5.858123e-01	k: 5761	n:10000
KS ci ratio: 3.270107e-02	ci left: 5.798839e-01	ci right 5.992639e-01	k: 5896	n:10000
MYLK2   10000 perm   2 sec   (5981 perm/sec)   p_kst 5.896000e-01   p_cons 5.761000e-01   p_joint 9.385000e-01

Outputting figure to mutsig2_images.part000000000110/MYLK2.3_1839_10000_0.5896_0.5761_0.9385.png
                gene_name: MYLK2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 86 percent done.
MUC20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 8.544729e-01	ci left: 1.222067e-03	ci right 3.087156e-03	k: 20	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
MUC20   10000 perm   2 sec   (6493 perm/sec)   p_kst 2.000000e-04   p_cons 2.000000e-03   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 5.772931e-01	ci left: 1.641624e-03	ci right 3.009532e-03	k: 45	n:20000
KS ci ratio: 1.131239e+00	ci left: 2.745890e-04	ci right 9.838883e-04	k: 11	n:20000
MUC20   20000 perm   4 sec   (5696 perm/sec)   p_kst 5.500000e-04   p_cons 2.250000e-03   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 4.856811e-01	ci left: 1.643302e-03	ci right 2.723414e-03	k: 64	n:30000
KS ci ratio: 8.762318e-01	ci left: 3.813497e-04	ci right 9.888526e-04	k: 19	n:30000
MUC20   30000 perm   6 sec   (5073 perm/sec)   p_kst 6.333333e-04   p_cons 2.133333e-03   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 4.434141e-01	ci left: 1.519469e-03	ci right 2.405341e-03	k: 77	n:40000
KS ci ratio: 7.037711e-01	ci left: 5.060773e-04	ci right 1.070500e-03	k: 30	n:40000
MUC20   40000 perm   8 sec   (4874 perm/sec)   p_kst 7.500000e-04   p_cons 1.925000e-03   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 3.750547e-01	ci left: 1.772216e-03	ci right 2.607270e-03	k: 108	n:50000
KS ci ratio: 6.274512e-01	ci left: 5.378756e-04	ci right 1.043012e-03	k: 38	n:50000
MUC20   50000 perm   11 sec   (4616 perm/sec)   p_kst 7.600000e-04   p_cons 2.160000e-03   p_joint 0

Joint ci ratio: 6.274931e-01	ci left: 4.482221e-04	ci right 8.691969e-04	k: 38	n:60000
Cons ci ratio: 3.502471e-01	ci left: 1.719231e-03	ci right 2.463582e-03	k: 124	n:60000
KS ci ratio: 5.715620e-01	ci left: 5.613493e-04	ci right 1.022495e-03	k: 46	n:60000
MUC20   60000 perm   13 sec   (4524 perm/sec)   p_kst 7.666667e-04   p_cons 2.066667e-03   p_joint 6.333333e-04

Joint ci ratio: 5.715947e-01	ci left: 4.811501e-04	ci right 8.764403e-04	k: 46	n:70000
Cons ci ratio: 3.309666e-01	ci left: 1.669589e-03	ci right 2.344190e-03	k: 139	n:70000
KS ci ratio: 5.382457e-01	ci left: 5.548495e-04	ci right 9.740456e-04	k: 52	n:70000
MUC20   70000 perm   16 sec   (4474 perm/sec)   p_kst 7.428571e-04   p_cons 1.985714e-03   p_joint 6.571429e-04

Joint ci ratio: 4.860156e-01	ci left: 6.161503e-04	ci right 1.021469e-03	k: 64	n:80000
Cons ci ratio: 3.155765e-01	ci left: 1.621691e-03	ci right 2.240324e-03	k: 153	n:80000
KS ci ratio: 5.101491e-01	ci left: 5.505675e-04	ci right 9.371312e-04	k: 58	n:80000
MUC20   80000 perm   18 sec   (4422 perm/sec)   p_kst 7.250000e-04   p_cons 1.912500e-03   p_joint 8.000000e-04

Joint ci ratio: 4.860379e-01	ci left: 5.476839e-04	ci right 9.079836e-04	k: 64	n:90000
Cons ci ratio: 3.012536e-01	ci left: 1.595274e-03	ci right 2.170926e-03	k: 168	n:90000
KS ci ratio: 5.017317e-01	ci left: 5.087743e-04	ci right 8.580500e-04	k: 60	n:90000
MUC20   90000 perm   21 sec   (4364 perm/sec)   p_kst 6.666667e-04   p_cons 1.866667e-03   p_joint 7.111111e-04

Joint ci ratio: 4.752058e-01	ci left: 5.192773e-04	ci right 8.507994e-04	k: 67	n:100000
Cons ci ratio: 2.841150e-01	ci left: 1.630346e-03	ci right 2.179190e-03	k: 189	n:100000
KS ci ratio: 4.752058e-01	ci left: 5.192773e-04	ci right 8.507994e-04	k: 67	n:100000
MUC20   100000 perm   23 sec   (4309 perm/sec)   p_kst 6.700000e-04   p_cons 1.890000e-03   p_joint 6.700000e-04

Joint ci ratio: 4.618231e-01	ci left: 5.041387e-04	ci right 8.140844e-04	k: 71	n:110000
Cons ci ratio: 2.762415e-01	ci left: 1.575102e-03	ci right 2.088099e-03	k: 200	n:110000
KS ci ratio: 4.618231e-01	ci left: 5.041387e-04	ci right 8.140844e-04	k: 71	n:110000
MUC20   110000 perm   26 sec   (4252 perm/sec)   p_kst 6.454545e-04   p_cons 1.818182e-03   p_joint 6.454545e-04

Joint ci ratio: 8.764619e-01	ci left: 9.532962e-05	ci right 2.472461e-04	k: 19	n:120000
Cons ci ratio: 2.323328e-01	ci left: 2.091816e-03	ci right 2.649336e-03	k: 283	n:120000
KS ci ratio: 4.408874e-01	ci left: 5.138309e-04	ci right 8.111640e-04	k: 78	n:120000
MUC20   120000 perm   29 sec   (4195 perm/sec)   p_kst 6.500000e-04   p_cons 2.358333e-03   p_joint 1.583333e-04

Joint ci ratio: 1.047604e+00	ci left: 5.324683e-05	ci right 1.709970e-04	k: 13	n:130000
Cons ci ratio: 2.249347e-01	ci left: 2.068688e-03	ci right 2.600054e-03	k: 302	n:130000
KS ci ratio: 4.225630e-01	ci left: 5.223014e-04	ci right 8.084284e-04	k: 85	n:130000
MUC20   130000 perm   31 sec   (4139 perm/sec)   p_kst 6.538462e-04   p_cons 2.323077e-03   p_joint 1.000000e-04

Joint ci ratio: 1.012082e+00	ci left: 5.467197e-05	ci right 1.677773e-04	k: 14	n:140000
Cons ci ratio: 2.178621e-01	ci left: 2.055860e-03	ci right 2.565104e-03	k: 322	n:140000
KS ci ratio: 4.085525e-01	ci left: 5.233707e-04	ci right 7.979969e-04	k: 91	n:140000
MUC20   140000 perm   34 sec   (4080 perm/sec)   p_kst 6.500000e-04   p_cons 2.300000e-03   p_joint 1.000000e-04

Joint ci ratio: 9.238943e-01	ci left: 6.602218e-05	ci right 1.814515e-04	k: 17	n:150000
Cons ci ratio: 2.101924e-01	ci left: 2.070230e-03	ci right 2.562657e-03	k: 346	n:150000
KS ci ratio: 3.958491e-01	ci left: 5.244334e-04	ci right 7.888224e-04	k: 97	n:150000
MUC20   150000 perm   37 sec   (4022 perm/sec)   p_kst 6.466667e-04   p_cons 2.306667e-03   p_joint 1.133333e-04

Joint ci ratio: 9.238980e-01	ci left: 6.189572e-05	ci right 1.701111e-04	k: 17	n:160000
Cons ci ratio: 2.038310e-01	ci left: 2.071214e-03	ci right 2.547108e-03	k: 368	n:160000
KS ci ratio: 3.824261e-01	ci left: 5.311270e-04	ci right 7.875296e-04	k: 104	n:160000
MUC20   160000 perm   40 sec   (3965 perm/sec)   p_kst 6.500000e-04   p_cons 2.300000e-03   p_joint 1.062500e-04

Joint ci ratio: 8.992568e-01	ci left: 6.275376e-05	ci right 1.673346e-04	k: 18	n:170000
Cons ci ratio: 1.982685e-01	ci left: 2.066689e-03	ci right 2.527018e-03	k: 389	n:170000
KS ci ratio: 3.670174e-01	ci left: 5.478421e-04	ci right 7.991061e-04	k: 113	n:170000
MUC20   170000 perm   43 sec   (3908 perm/sec)   p_kst 6.647059e-04   p_cons 2.288235e-03   p_joint 1.058824e-04

Joint ci ratio: 8.553619e-01	ci left: 6.787083e-05	ci right 1.715969e-04	k: 20	n:180000
Cons ci ratio: 1.922027e-01	ci left: 2.083976e-03	ci right 2.532295e-03	k: 414	n:180000
KS ci ratio: 3.577251e-01	ci left: 5.477053e-04	ci right 7.910666e-04	k: 119	n:180000
MUC20   180000 perm   47 sec   (3855 perm/sec)   p_kst 6.611111e-04   p_cons 2.300000e-03   p_joint 1.111111e-04

Joint ci ratio: 3.638508e-01	ci left: 4.997319e-04	ci right 7.264827e-04	k: 115	n:190000
Cons ci ratio: 1.870883e-01	ci left: 2.089599e-03	ci right 2.525808e-03	k: 437	n:190000
KS ci ratio: 3.491046e-01	ci left: 5.476545e-04	ci right 7.838025e-04	k: 125	n:190000
MUC20   190000 perm   50 sec   (3794 perm/sec)   p_kst 6.578947e-04   p_cons 2.300000e-03   p_joint 6.052632e-04

Joint ci ratio: 3.547910e-01	ci left: 5.020376e-04	ci right 7.228552e-04	k: 121	n:200000
Cons ci ratio: 1.815737e-01	ci left: 2.113893e-03	ci right 2.540736e-03	k: 464	n:200000
KS ci ratio: 3.463706e-01	ci left: 5.293975e-04	ci right 7.554840e-04	k: 127	n:200000
MUC20   200000 perm   54 sec   (3737 perm/sec)   p_kst 6.350000e-04   p_cons 2.320000e-03   p_joint 6.050000e-04

Joint ci ratio: 3.999909e-01	ci left: 3.660181e-04	ci right 5.529844e-04	k: 95	n:210000
Cons ci ratio: 1.785314e-01	ci left: 2.085986e-03	ci right 2.499373e-03	k: 480	n:210000
KS ci ratio: 3.360276e-01	ci left: 5.390205e-04	ci right 7.608543e-04	k: 135	n:210000
MUC20   210000 perm   57 sec   (3685 perm/sec)   p_kst 6.428571e-04   p_cons 2.285714e-03   p_joint 4.523810e-04

Joint ci ratio: 3.880470e-01	ci left: 3.739522e-04	ci right 5.578095e-04	k: 101	n:220000
Cons ci ratio: 1.740643e-01	ci left: 2.099792e-03	ci right 2.504409e-03	k: 505	n:220000
KS ci ratio: 3.254302e-01	ci left: 5.520335e-04	ci right 7.705622e-04	k: 144	n:220000
MUC20   220000 perm   60 sec   (3638 perm/sec)   p_kst 6.545455e-04   p_cons 2.295455e-03   p_joint 4.590909e-04

Joint ci ratio: 3.806555e-01	ci left: 3.734043e-04	ci right 5.526208e-04	k: 105	n:230000
Cons ci ratio: 1.688051e-01	ci left: 2.141662e-03	ci right 2.540610e-03	k: 537	n:230000
KS ci ratio: 3.117506e-01	ci left: 5.800378e-04	ci right 7.980818e-04	k: 157	n:230000
MUC20   230000 perm   64 sec   (3591 perm/sec)   p_kst 6.826087e-04   p_cons 2.334783e-03   p_joint 4.565217e-04

Joint ci ratio: 3.806592e-01	ci left: 3.578452e-04	ci right 5.295960e-04	k: 105	n:240000
Cons ci ratio: 1.654565e-01	ci left: 2.140259e-03	ci right 2.530249e-03	k: 559	n:240000
KS ci ratio: 3.088350e-01	ci left: 5.673958e-04	ci right 7.782997e-04	k: 160	n:240000
MUC20   240000 perm   68 sec   (3548 perm/sec)   p_kst 6.666667e-04   p_cons 2.329167e-03   p_joint 4.375000e-04

Joint ci ratio: 3.899750e-01	ci left: 3.254674e-04	ci right 4.864861e-04	k: 100	n:250000
Cons ci ratio: 1.620209e-01	ci left: 2.146715e-03	ci right 2.528969e-03	k: 583	n:250000
KS ci ratio: 3.041494e-01	ci left: 5.631618e-04	ci right 7.687013e-04	k: 165	n:250000
MUC20   250000 perm   71 sec   (3505 perm/sec)   p_kst 6.600000e-04   p_cons 2.332000e-03   p_joint 4.000000e-04

Joint ci ratio: 4.302064e-01	ci left: 2.508424e-04	ci right 3.914606e-04	k: 82	n:260000
Cons ci ratio: 1.580111e-01	ci left: 2.174916e-03	ci right 2.551699e-03	k: 613	n:260000
KS ci ratio: 2.979323e-01	ci left: 5.663919e-04	ci right 7.680860e-04	k: 172	n:260000
MUC20   260000 perm   75 sec   (3462 perm/sec)   p_kst 6.615385e-04   p_cons 2.357692e-03   p_joint 3.153846e-04

Joint ci ratio: 7.543652e-01	ci left: 6.290487e-05	ci right 1.410932e-04	k: 26	n:270000
Cons ci ratio: 1.552546e-01	ci left: 2.172651e-03	ci right 2.541864e-03	k: 635	n:270000
KS ci ratio: 2.881048e-01	ci left: 5.865942e-04	ci right 7.873381e-04	k: 184	n:270000
MUC20   270000 perm   79 sec   (3418 perm/sec)   p_kst 6.814815e-04   p_cons 2.351852e-03   p_joint 9.629630e-05

Joint ci ratio: 7.278867e-01	ci left: 6.645027e-05	ci right 1.445246e-04	k: 28	n:280000
Cons ci ratio: 1.521746e-01	ci left: 2.184343e-03	ci right 2.547508e-03	k: 661	n:280000
KS ci ratio: 2.835440e-01	ci left: 5.855370e-04	ci right 7.821795e-04	k: 190	n:280000
MUC20   280000 perm   83 sec   (3371 perm/sec)   p_kst 6.785714e-04   p_cons 2.360714e-03   p_joint 1.000000e-04

Joint ci ratio: 7.156526e-01	ci left: 6.697256e-05	ci right 1.436135e-04	k: 29	n:290000
Cons ci ratio: 1.492710e-01	ci left: 2.195296e-03	ci right 2.552696e-03	k: 687	n:290000
KS ci ratio: 2.784867e-01	ci left: 5.877833e-04	ci right 7.810421e-04	k: 197	n:290000
MUC20   290000 perm   87 sec   (3331 perm/sec)   p_kst 6.793103e-04   p_cons 2.368966e-03   p_joint 1.000000e-04

Joint ci ratio: 3.919340e-01	ci left: 2.682156e-04	ci right 4.017487e-04	k: 99	n:300000
Cons ci ratio: 1.459141e-01	ci left: 2.224850e-03	ci right 2.578206e-03	k: 719	n:300000
KS ci ratio: 2.757169e-01	ci left: 5.805971e-04	ci right 7.692653e-04	k: 201	n:300000
MUC20   300000 perm   91 sec   (3291 perm/sec)   p_kst 6.700000e-04   p_cons 2.396667e-03   p_joint 3.300000e-04

Joint ci ratio: 3.861843e-01	ci left: 2.682942e-04	ci right 3.994087e-04	k: 102	n:310000
Cons ci ratio: 1.435414e-01	ci left: 2.227697e-03	ci right 2.575258e-03	k: 743	n:310000
KS ci ratio: 2.691342e-01	ci left: 5.919238e-04	ci right 7.789054e-04	k: 211	n:310000
MUC20   310000 perm   95 sec   (3252 perm/sec)   p_kst 6.806452e-04   p_cons 2.396774e-03   p_joint 3.290323e-04

Joint ci ratio: 3.788967e-01	ci left: 2.712081e-04	ci right 4.006234e-04	k: 106	n:320000
Cons ci ratio: 1.420242e-01	ci left: 2.206293e-03	ci right 2.546569e-03	k: 759	n:320000
KS ci ratio: 2.666318e-01	ci left: 5.850865e-04	ci right 7.679025e-04	k: 215	n:320000
MUC20   320000 perm   100 sec   (3216 perm/sec)   p_kst 6.718750e-04   p_cons 2.371875e-03   p_joint 3.312500e-04

Joint ci ratio: 3.736945e-01	ci left: 2.712208e-04	ci right 3.984302e-04	k: 109	n:330000
Cons ci ratio: 1.396549e-01	ci left: 2.215448e-03	ci right 2.550961e-03	k: 785	n:330000
KS ci ratio: 2.635990e-01	ci left: 5.815010e-04	ci right 7.607892e-04	k: 220	n:330000
MUC20   330000 perm   104 sec   (3180 perm/sec)   p_kst 6.666667e-04   p_cons 2.378788e-03   p_joint 3.303030e-04

Joint ci ratio: 3.670795e-01	ci left: 2.739135e-04	ci right 3.995665e-04	k: 113	n:340000
Cons ci ratio: 1.377410e-01	ci left: 2.212748e-03	ci right 2.542883e-03	k: 807	n:340000
KS ci ratio: 2.618293e-01	ci left: 5.726402e-04	ci right 7.478169e-04	k: 223	n:340000
MUC20   340000 perm   108 sec   (3145 perm/sec)   p_kst 6.558824e-04   p_cons 2.373529e-03   p_joint 3.323529e-04

Joint ci ratio: 3.608039e-01	ci left: 2.764710e-04	ci right 4.006194e-04	k: 117	n:350000
Cons ci ratio: 1.355765e-01	ci left: 2.221274e-03	ci right 2.547053e-03	k: 833	n:350000
KS ci ratio: 2.600948e-01	ci left: 5.642895e-04	ci right 7.355820e-04	k: 226	n:350000
MUC20   350000 perm   113 sec   (3111 perm/sec)   p_kst 6.457143e-04   p_cons 2.380000e-03   p_joint 3.342857e-04

Joint ci ratio: 3.563032e-01	ci left: 2.763739e-04	ci right 3.985720e-04	k: 120	n:360000
Cons ci ratio: 1.338233e-01	ci left: 2.218623e-03	ci right 2.539471e-03	k: 855	n:360000
KS ci ratio: 2.567243e-01	ci left: 5.642020e-04	ci right 7.328930e-04	k: 232	n:360000
MUC20   360000 perm   117 sec   (3077 perm/sec)   p_kst 6.444444e-04   p_cons 2.375000e-03   p_joint 3.333333e-04

Joint ci ratio: 3.563049e-01	ci left: 2.689042e-04	ci right 3.878001e-04	k: 120	n:370000
Cons ci ratio: 1.327439e-01	ci left: 2.195235e-03	ci right 2.509937e-03	k: 869	n:370000
KS ci ratio: 2.550885e-01	ci left: 5.565411e-04	ci right 7.217126e-04	k: 235	n:370000
MUC20   370000 perm   122 sec   (3033 perm/sec)   p_kst 6.351351e-04   p_cons 2.348649e-03   p_joint 3.243243e-04

Joint ci ratio: 3.491630e-01	ci left: 2.738201e-04	ci right 3.919136e-04	k: 125	n:380000
Cons ci ratio: 1.313926e-01	ci left: 2.183268e-03	ci right 2.492820e-03	k: 887	n:380000
KS ci ratio: 2.483382e-01	ci left: 5.739488e-04	ci right 7.390830e-04	k: 248	n:380000
MUC20   380000 perm   127 sec   (2999 perm/sec)   p_kst 6.526316e-04   p_cons 2.334211e-03   p_joint 3.289474e-04

Joint ci ratio: 3.477867e-01	ci left: 2.691386e-04	ci right 3.846524e-04	k: 126	n:390000
Cons ci ratio: 1.304430e-01	ci left: 2.159526e-03	ci right 2.463328e-03	k: 900	n:390000
KS ci ratio: 2.449193e-01	ci left: 5.760718e-04	ci right 7.391879e-04	k: 255	n:390000
MUC20   390000 perm   131 sec   (2967 perm/sec)   p_kst 6.538462e-04   p_cons 2.307692e-03   p_joint 3.230769e-04

Joint ci ratio: 3.450807e-01	ci left: 2.669751e-04	ci right 3.804695e-04	k: 128	n:400000
Cons ci ratio: 1.293012e-01	ci left: 2.144238e-03	ci right 2.443045e-03	k: 916	n:400000
KS ci ratio: 2.425624e-01	ci left: 5.734064e-04	ci right 7.339703e-04	k: 260	n:400000
MUC20   400000 perm   136 sec   (2935 perm/sec)   p_kst 6.500000e-04   p_cons 2.290000e-03   p_joint 3.200000e-04

Joint ci ratio: 3.385807e-01	ci left: 2.716120e-04	ci right 3.844276e-04	k: 133	n:410000
Cons ci ratio: 1.281888e-01	ci left: 2.129706e-03	ci right 2.423741e-03	k: 932	n:410000
KS ci ratio: 2.393735e-01	ci left: 5.754634e-04	ci right 7.341705e-04	k: 267	n:410000
MUC20   410000 perm   141 sec   (2905 perm/sec)   p_kst 6.512195e-04   p_cons 2.273171e-03   p_joint 3.243902e-04

Joint ci ratio: 3.450833e-01	ci left: 2.542617e-04	ci right 3.623525e-04	k: 128	n:420000
Cons ci ratio: 1.266373e-01	ci left: 2.132015e-03	ci right 2.422539e-03	k: 955	n:420000
KS ci ratio: 2.367383e-01	ci left: 5.751956e-04	ci right 7.318265e-04	k: 273	n:420000
MUC20   420000 perm   146 sec   (2874 perm/sec)   p_kst 6.500000e-04   p_cons 2.273810e-03   p_joint 3.047619e-04

Joint ci ratio: 3.411394e-01	ci left: 2.547242e-04	ci right 3.615013e-04	k: 131	n:430000
Cons ci ratio: 1.255270e-01	ci left: 2.120720e-03	ci right 2.406983e-03	k: 972	n:430000
KS ci ratio: 2.346078e-01	ci left: 5.727602e-04	ci right 7.271206e-04	k: 278	n:430000
MUC20   430000 perm   151 sec   (2844 perm/sec)   p_kst 6.465116e-04   p_cons 2.260465e-03   p_joint 3.046512e-04

Joint ci ratio: 3.336398e-01	ci left: 2.614165e-04	ci right 3.680723e-04	k: 137	n:440000
Cons ci ratio: 1.241316e-01	ci left: 2.120961e-03	ci right 2.403839e-03	k: 994	n:440000
KS ci ratio: 2.325339e-01	ci left: 5.704415e-04	ci right 7.226227e-04	k: 283	n:440000
MUC20   440000 perm   156 sec   (2814 perm/sec)   p_kst 6.431818e-04   p_cons 2.259091e-03   p_joint 3.113636e-04

Joint ci ratio: 3.277544e-01	ci left: 2.657961e-04	ci right 3.719230e-04	k: 142	n:450000
Cons ci ratio: 1.230245e-01	ci left: 2.112591e-03	ci right 2.391657e-03	k: 1012	n:450000
KS ci ratio: 2.309140e-01	ci left: 5.661378e-04	ci right 7.159686e-04	k: 287	n:450000
MUC20   450000 perm   162 sec   (2781 perm/sec)   p_kst 6.377778e-04   p_cons 2.248889e-03   p_joint 3.155556e-04

Joint ci ratio: 3.254866e-01	ci left: 2.640093e-04	ci right 3.685409e-04	k: 144	n:460000
Cons ci ratio: 1.216511e-01	ci left: 2.115135e-03	ci right 2.391194e-03	k: 1035	n:460000
KS ci ratio: 2.285457e-01	ci left: 5.661233e-04	ci right 7.141969e-04	k: 293	n:460000
MUC20   460000 perm   167 sec   (2750 perm/sec)   p_kst 6.369565e-04   p_cons 2.250000e-03   p_joint 3.130435e-04

Joint ci ratio: 3.232652e-01	ci left: 2.623009e-04	ci right 3.653003e-04	k: 146	n:470000
Cons ci ratio: 1.206085e-01	ci left: 2.107269e-03	ci right 2.379776e-03	k: 1053	n:470000
KS ci ratio: 2.258724e-01	ci left: 5.681242e-04	ci right 7.147410e-04	k: 300	n:470000
MUC20   470000 perm   173 sec   (2716 perm/sec)   p_kst 6.382979e-04   p_cons 2.240426e-03   p_joint 3.106383e-04

Joint ci ratio: 3.210887e-01	ci left: 2.606660e-04	ci right 3.621924e-04	k: 148	n:480000
Cons ci ratio: 1.194805e-01	ci left: 2.103783e-03	ci right 2.373115e-03	k: 1073	n:480000
KS ci ratio: 2.225689e-01	ci left: 5.739854e-04	ci right 7.196516e-04	k: 309	n:480000
MUC20   480000 perm   179 sec   (2688 perm/sec)   p_kst 6.437500e-04   p_cons 2.235417e-03   p_joint 3.083333e-04

Joint ci ratio: 3.179043e-01	ci left: 2.609778e-04	ci right 3.614125e-04	k: 151	n:490000
Cons ci ratio: 1.179522e-01	ci left: 2.116296e-03	ci right 2.383522e-03	k: 1101	n:490000
KS ci ratio: 2.187212e-01	ci left: 5.834802e-04	ci right 7.286520e-04	k: 320	n:490000
MUC20   490000 perm   184 sec   (2661 perm/sec)   p_kst 6.530612e-04   p_cons 2.246939e-03   p_joint 3.081633e-04

Joint ci ratio: 3.243738e-01	ci left: 2.447250e-04	ci right 3.412209e-04	k: 145	n:500000
Cons ci ratio: 1.167401e-01	ci left: 2.118620e-03	ci right 2.383201e-03	k: 1124	n:500000
KS ci ratio: 2.160453e-01	ci left: 5.869396e-04	ci right 7.309486e-04	k: 328	n:500000
MUC20   500000 perm   190 sec   (2635 perm/sec)   p_kst 6.560000e-04   p_cons 2.248000e-03   p_joint 2.900000e-04

Joint ci ratio: 3.221749e-01	ci left: 2.435298e-04	ci right 3.387690e-04	k: 147	n:510000
Cons ci ratio: 1.159195e-01	ci left: 2.107537e-03	ci right 2.368757e-03	k: 1140	n:510000
KS ci ratio: 2.125208e-01	ci left: 5.958425e-04	ci right 7.393402e-04	k: 339	n:510000
MUC20   510000 perm   195 sec   (2609 perm/sec)   p_kst 6.647059e-04   p_cons 2.235294e-03   p_joint 2.882353e-04

Joint ci ratio: 3.179072e-01	ci left: 2.459211e-04	ci right 3.405623e-04	k: 151	n:520000
Cons ci ratio: 1.146205e-01	ci left: 2.115566e-03	ci right 2.374645e-03	k: 1166	n:520000
KS ci ratio: 2.112821e-01	ci left: 5.916680e-04	ci right 7.332222e-04	k: 343	n:520000
MUC20   520000 perm   202 sec   (2579 perm/sec)   p_kst 6.596154e-04   p_cons 2.242308e-03   p_joint 2.903846e-04

Joint ci ratio: 3.138047e-01	ci left: 2.482301e-04	ci right 3.422800e-04	k: 155	n:530000
Cons ci ratio: 1.137471e-01	ci left: 2.108642e-03	ci right 2.364773e-03	k: 1184	n:530000
KS ci ratio: 2.091646e-01	ci left: 5.930167e-04	ci right 7.332897e-04	k: 350	n:530000
MUC20   530000 perm   207 sec   (2555 perm/sec)   p_kst 6.603774e-04   p_cons 2.233962e-03   p_joint 2.924528e-04

Joint ci ratio: 3.118125e-01	ci left: 2.470462e-04	ci right 3.399350e-04	k: 157	n:540000
Cons ci ratio: 1.128464e-01	ci left: 2.103781e-03	ci right 2.357163e-03	k: 1203	n:540000
KS ci ratio: 2.076909e-01	ci left: 5.908109e-04	ci right 7.294522e-04	k: 355	n:540000
MUC20   540000 perm   213 sec   (2530 perm/sec)   p_kst 6.574074e-04   p_cons 2.227778e-03   p_joint 2.907407e-04

Joint ci ratio: 3.069923e-01	ci left: 2.509397e-04	ci right 3.435487e-04	k: 162	n:550000
Cons ci ratio: 1.117381e-01	ci left: 2.107941e-03	ci right 2.359166e-03	k: 1227	n:550000
KS ci ratio: 2.062479e-01	ci left: 5.886885e-04	ci right 7.257509e-04	k: 360	n:550000
MUC20   550000 perm   219 sec   (2507 perm/sec)   p_kst 6.545455e-04   p_cons 2.230909e-03   p_joint 2.945455e-04

Joint ci ratio: 5.657785e-01	ci left: 6.166819e-05	ci right 1.116057e-04	k: 47	n:560000
Cons ci ratio: 1.107949e-01	ci left: 2.106756e-03	ci right 2.355582e-03	k: 1248	n:560000
KS ci ratio: 2.051151e-01	ci left: 5.849511e-04	ci right 7.203015e-04	k: 364	n:560000
MUC20   560000 perm   225 sec   (2484 perm/sec)   p_kst 6.500000e-04   p_cons 2.228571e-03   p_joint 8.392857e-05

Joint ci ratio: 5.657789e-01	ci left: 6.058628e-05	ci right 1.096477e-04	k: 47	n:570000
Cons ci ratio: 1.097453e-01	ci left: 2.110739e-03	ci right 2.357522e-03	k: 1272	n:570000
KS ci ratio: 2.023612e-01	ci left: 5.913379e-04	ci right 7.261020e-04	k: 374	n:570000
MUC20   570000 perm   232 sec   (2462 perm/sec)   p_kst 6.561404e-04   p_cons 2.231579e-03   p_joint 8.245614e-05

Joint ci ratio: 5.543473e-01	ci left: 6.250144e-05	ci right 1.116892e-04	k: 49	n:580000
Cons ci ratio: 1.086831e-01	ci left: 2.116273e-03	ci right 2.361155e-03	k: 1297	n:580000
KS ci ratio: 1.997152e-01	ci left: 5.975161e-04	ci right 7.316909e-04	k: 384	n:580000
MUC20   580000 perm   238 sec   (2439 perm/sec)   p_kst 6.620690e-04   p_cons 2.236207e-03   p_joint 8.448276e-05

Joint ci ratio: 5.488856e-01	ci left: 6.290057e-05	ci right 1.117252e-04	k: 50	n:590000
Cons ci ratio: 1.077327e-01	ci left: 2.118333e-03	ci right 2.361173e-03	k: 1320	n:590000
KS ci ratio: 1.986862e-01	ci left: 5.938301e-04	ci right 7.264069e-04	k: 388	n:590000
MUC20   590000 perm   244 sec   (2417 perm/sec)   p_kst 6.576271e-04   p_cons 2.237288e-03   p_joint 8.474576e-05

Joint ci ratio: 5.488860e-01	ci left: 6.185222e-05	ci right 1.098632e-04	k: 50	n:600000
Cons ci ratio: 1.068069e-01	ci left: 2.120332e-03	ci right 2.361181e-03	k: 1343	n:600000
KS ci ratio: 1.979250e-01	ci left: 5.886845e-04	ci right 7.195482e-04	k: 391	n:600000
MUC20   600000 perm   251 sec   (2394 perm/sec)   p_kst 6.516667e-04   p_cons 2.238333e-03   p_joint 8.333333e-05

Joint ci ratio: 5.435826e-01	ci left: 6.225119e-05	ci right 1.099257e-04	k: 51	n:610000
Cons ci ratio: 1.056723e-01	ci left: 2.131851e-03	ci right 2.371276e-03	k: 1372	n:610000
KS ci ratio: 1.974228e-01	ci left: 5.821502e-04	ci right 7.111934e-04	k: 393	n:610000
MUC20   610000 perm   257 sec   (2372 perm/sec)   p_kst 6.442623e-04   p_cons 2.249180e-03   p_joint 8.360656e-05

Joint ci ratio: 5.435830e-01	ci left: 6.124713e-05	ci right 1.081528e-04	k: 51	n:620000
Cons ci ratio: 1.050625e-01	ci left: 2.122592e-03	ci right 2.359517e-03	k: 1388	n:620000
KS ci ratio: 1.952055e-01	ci left: 5.865635e-04	ci right 7.149511e-04	k: 402	n:620000
MUC20   620000 perm   264 sec   (2351 perm/sec)   p_kst 6.483871e-04   p_cons 2.238710e-03   p_joint 8.225806e-05

Joint ci ratio: 5.435833e-01	ci left: 6.027494e-05	ci right 1.064361e-04	k: 51	n:630000
Cons ci ratio: 1.041293e-01	ci left: 2.127545e-03	ci right 2.362784e-03	k: 1413	n:630000
KS ci ratio: 1.940059e-01	ci left: 5.848027e-04	ci right 7.119254e-04	k: 407	n:630000
MUC20   630000 perm   270 sec   (2330 perm/sec)   p_kst 6.460317e-04   p_cons 2.242857e-03   p_joint 8.095238e-05

Joint ci ratio: 5.435837e-01	ci left: 5.933314e-05	ci right 1.047730e-04	k: 51	n:640000
Cons ci ratio: 1.032926e-01	ci left: 2.129307e-03	ci right 2.362735e-03	k: 1436	n:640000
KS ci ratio: 1.914417e-01	ci left: 5.920236e-04	ci right 7.188171e-04	k: 418	n:640000
MUC20   640000 perm   277 sec   (2307 perm/sec)   p_kst 6.531250e-04   p_cons 2.243750e-03   p_joint 7.968750e-05

Joint ci ratio: 5.384310e-01	ci left: 5.974839e-05	ci right 1.049080e-04	k: 52	n:650000
Cons ci ratio: 1.025461e-01	ci left: 2.128025e-03	ci right 2.359524e-03	k: 1457	n:650000
KS ci ratio: 1.896396e-01	ci left: 5.946363e-04	ci right 7.206524e-04	k: 426	n:650000
MUC20   650000 perm   285 sec   (2282 perm/sec)   p_kst 6.553846e-04   p_cons 2.241538e-03   p_joint 8.000000e-05

Joint ci ratio: 5.599788e-01	ci left: 5.362382e-05	ci right 9.642467e-05	k: 48	n:660000
Cons ci ratio: 1.016093e-01	ci left: 2.135647e-03	ci right 2.365727e-03	k: 1484	n:660000
KS ci ratio: 1.885392e-01	ci left: 5.928437e-04	ci right 7.176674e-04	k: 431	n:660000
MUC20   660000 perm   292 sec   (2257 perm/sec)   p_kst 6.530303e-04   p_cons 2.248485e-03   p_joint 7.272727e-05

Joint ci ratio: 5.599791e-01	ci left: 5.282346e-05	ci right 9.498551e-05	k: 48	n:670000
Cons ci ratio: 1.006643e-01	ci left: 2.144506e-03	ci right 2.373264e-03	k: 1512	n:670000
KS ci ratio: 1.878885e-01	ci left: 5.882618e-04	ci right 7.116445e-04	k: 434	n:670000
MUC20   670000 perm   300 sec   (2236 perm/sec)   p_kst 6.477612e-04   p_cons 2.256716e-03   p_joint 7.164179e-05

Joint ci ratio: 5.543509e-01	ci left: 5.330997e-05	ci right 9.526448e-05	k: 49	n:680000
Cons ci ratio: 9.994034e-02	ci left: 2.144511e-03	ci right 2.371528e-03	k: 1534	n:680000
KS ci ratio: 1.861840e-01	ci left: 5.908248e-04	ci right 7.134940e-04	k: 442	n:680000
MUC20   680000 perm   307 sec   (2216 perm/sec)   p_kst 6.500000e-04   p_cons 2.255882e-03   p_joint 7.205882e-05

Joint ci ratio: 5.146992e-01	ci left: 6.256760e-05	ci right 1.070278e-04	k: 57	n:690000
Cons ci ratio: 9.935981e-02	ci left: 2.138867e-03	ci right 2.363895e-03	k: 1552	n:690000
KS ci ratio: 1.841171e-01	ci left: 5.960834e-04	ci right 7.183170e-04	k: 452	n:690000
MUC20   690000 perm   314 sec   (2198 perm/sec)   p_kst 6.550725e-04   p_cons 2.249275e-03   p_joint 8.260870e-05

Joint ci ratio: 5.146995e-01	ci left: 6.167377e-05	ci right 1.054989e-04	k: 57	n:700000
Cons ci ratio: 9.866346e-02	ci left: 2.138962e-03	ci right 2.362332e-03	k: 1574	n:700000
KS ci ratio: 1.829098e-01	ci left: 5.957456e-04	ci right 7.170201e-04	k: 458	n:700000
MUC20   700000 perm   321 sec   (2181 perm/sec)   p_kst 6.542857e-04   p_cons 2.248571e-03   p_joint 8.142857e-05

Joint ci ratio: 5.146998e-01	ci left: 6.080512e-05	ci right 1.040130e-04	k: 57	n:710000
Cons ci ratio: 9.785880e-02	ci left: 2.144556e-03	ci right 2.366578e-03	k: 1600	n:710000
KS ci ratio: 1.805640e-01	ci left: 6.034876e-04	ci right 7.245904e-04	k: 470	n:710000
MUC20   710000 perm   328 sec   (2164 perm/sec)   p_kst 6.619718e-04   p_cons 2.253521e-03   p_joint 8.028169e-05

Joint ci ratio: 5.147001e-01	ci left: 5.996059e-05	ci right 1.025684e-04	k: 57	n:720000
Cons ci ratio: 9.731359e-02	ci left: 2.139160e-03	ci right 2.359320e-03	k: 1618	n:720000
KS ci ratio: 1.796134e-01	ci left: 6.017371e-04	ci right 7.217838e-04	k: 475	n:720000
MUC20   720000 perm   335 sec   (2148 perm/sec)   p_kst 6.597222e-04   p_cons 2.247222e-03   p_joint 7.916667e-05

Joint ci ratio: 5.018833e-01	ci left: 6.272156e-05	ci right 1.057959e-04	k: 60	n:730000
Cons ci ratio: 9.674779e-02	ci left: 2.135252e-03	ci right 2.353659e-03	k: 1637	n:730000
KS ci ratio: 1.777555e-01	ci left: 6.065803e-04	ci right 7.262069e-04	k: 485	n:730000
MUC20   730000 perm   343 sec   (2129 perm/sec)   p_kst 6.643836e-04   p_cons 2.242466e-03   p_joint 8.219178e-05

Joint ci ratio: 5.018835e-01	ci left: 6.187396e-05	ci right 1.043662e-04	k: 60	n:740000
Cons ci ratio: 9.619173e-02	ci left: 2.131453e-03	ci right 2.348148e-03	k: 1656	n:740000
KS ci ratio: 1.766684e-01	ci left: 6.061317e-04	ci right 7.248607e-04	k: 491	n:740000
MUC20   740000 perm   350 sec   (2113 perm/sec)   p_kst 6.635135e-04   p_cons 2.237838e-03   p_joint 8.108108e-05

Joint ci ratio: 4.978196e-01	ci left: 6.221411e-05	ci right 1.044749e-04	k: 61	n:750000
Cons ci ratio: 9.581720e-02	ci left: 2.119951e-03	ci right 2.334590e-03	k: 1669	n:750000
KS ci ratio: 1.752492e-01	ci left: 6.082469e-04	ci right 7.263318e-04	k: 499	n:750000
MUC20   750000 perm   358 sec   (2097 perm/sec)   p_kst 6.653333e-04   p_cons 2.225333e-03   p_joint 8.133333e-05

Joint ci ratio: 4.824974e-01	ci left: 6.600801e-05	ci right 1.090090e-04	k: 65	n:760000
Cons ci ratio: 9.533353e-02	ci left: 2.113890e-03	ci right 2.326775e-03	k: 1686	n:760000
KS ci ratio: 1.733522e-01	ci left: 6.140861e-04	ci right 7.318791e-04	k: 510	n:760000
MUC20   760000 perm   365 sec   (2081 perm/sec)   p_kst 6.710526e-04   p_cons 2.218421e-03   p_joint 8.552632e-05

Joint ci ratio: 4.788831e-01	ci left: 6.629202e-05	ci right 1.090483e-04	k: 66	n:770000
Cons ci ratio: 9.471794e-02	ci left: 2.114329e-03	ci right 2.325807e-03	k: 1708	n:770000
KS ci ratio: 1.725104e-01	ci left: 6.123233e-04	ci right 7.291485e-04	k: 515	n:770000
MUC20   770000 perm   373 sec   (2064 perm/sec)   p_kst 6.688312e-04   p_cons 2.218182e-03   p_joint 8.571429e-05

Joint ci ratio: 4.753488e-01	ci left: 6.656993e-05	ci right 1.090854e-04	k: 67	n:780000
Cons ci ratio: 9.403250e-02	ci left: 2.118518e-03	ci right 2.328796e-03	k: 1733	n:780000
KS ci ratio: 1.715162e-01	ci left: 6.118341e-04	ci right 7.278236e-04	k: 521	n:780000
MUC20   780000 perm   381 sec   (2049 perm/sec)   p_kst 6.679487e-04   p_cons 2.221795e-03   p_joint 8.589744e-05

Joint ci ratio: 4.718916e-01	ci left: 6.684194e-05	ci right 1.091205e-04	k: 68	n:790000
Cons ci ratio: 9.360202e-02	ci left: 2.111478e-03	ci right 2.320047e-03	k: 1749	n:790000
KS ci ratio: 1.705390e-01	ci left: 6.113592e-04	ci right 7.265304e-04	k: 527	n:790000
MUC20   790000 perm   388 sec   (2034 perm/sec)   p_kst 6.670886e-04   p_cons 2.213924e-03   p_joint 8.607595e-05

Joint ci ratio: 4.685088e-01	ci left: 6.710825e-05	ci right 1.091536e-04	k: 69	n:800000
Cons ci ratio: 9.301916e-02	ci left: 2.111943e-03	ci right 2.319187e-03	k: 1771	n:800000
KS ci ratio: 1.695783e-01	ci left: 6.108980e-04	ci right 7.252677e-04	k: 533	n:800000
MUC20   800000 perm   396 sec   (2019 perm/sec)   p_kst 6.662500e-04   p_cons 2.213750e-03   p_joint 8.625000e-05

Joint ci ratio: 4.619556e-01	ci left: 6.845937e-05	ci right 1.105627e-04	k: 71	n:810000
Cons ci ratio: 9.257644e-02	ci left: 2.106370e-03	ci right 2.312030e-03	k: 1788	n:810000
KS ci ratio: 1.687901e-01	ci left: 6.092675e-04	ci right 7.227478e-04	k: 538	n:810000
MUC20   810000 perm   404 sec   (2004 perm/sec)   p_kst 6.641975e-04   p_cons 2.207407e-03   p_joint 8.765432e-05

Joint ci ratio: 4.587806e-01	ci left: 6.870252e-05	ci right 1.105745e-04	k: 72	n:820000
Cons ci ratio: 9.216556e-02	ci left: 2.099744e-03	ci right 2.303798e-03	k: 1804	n:820000
KS ci ratio: 1.678584e-01	ci left: 6.088462e-04	ci right 7.215589e-04	k: 544	n:820000
MUC20   820000 perm   412 sec   (1989 perm/sec)   p_kst 6.634146e-04   p_cons 2.200000e-03   p_joint 8.780488e-05

Joint ci ratio: 4.587808e-01	ci left: 6.787478e-05	ci right 1.092422e-04	k: 72	n:830000
Cons ci ratio: 9.163411e-02	ci left: 2.099165e-03	ci right 2.301924e-03	k: 1825	n:830000
KS ci ratio: 1.677052e-01	ci left: 6.026648e-04	ci right 7.141210e-04	k: 545	n:830000
MUC20   830000 perm   420 sec   (1975 perm/sec)   p_kst 6.566265e-04   p_cons 2.198795e-03   p_joint 8.674699e-05

Joint ci ratio: 4.587811e-01	ci left: 6.706674e-05	ci right 1.079418e-04	k: 72	n:840000
Cons ci ratio: 9.091463e-02	ci left: 2.107912e-03	ci right 2.309831e-03	k: 1854	n:840000
KS ci ratio: 1.666404e-01	ci left: 6.034749e-04	ci right 7.143012e-04	k: 552	n:840000
MUC20   840000 perm   428 sec   (1960 perm/sec)   p_kst 6.571429e-04   p_cons 2.207143e-03   p_joint 8.571429e-05

Joint ci ratio: 4.526224e-01	ci left: 6.836050e-05	ci right 1.092932e-04	k: 74	n:850000
Cons ci ratio: 9.021184e-02	ci left: 2.116458e-03	ci right 2.317547e-03	k: 1883	n:850000
KS ci ratio: 1.651535e-01	ci left: 6.076516e-04	ci right 7.181502e-04	k: 562	n:850000
MUC20   850000 perm   437 sec   (1946 perm/sec)   p_kst 6.611765e-04   p_cons 2.215294e-03   p_joint 8.705882e-05

Joint ci ratio: 4.496347e-01	ci left: 6.859625e-05	ci right 1.093164e-04	k: 75	n:860000
Cons ci ratio: 8.957203e-02	ci left: 2.122538e-03	ci right 2.322699e-03	k: 1910	n:860000
KS ci ratio: 1.639923e-01	ci left: 6.095051e-04	ci right 7.194847e-04	k: 570	n:860000
MUC20   860000 perm   445 sec   (1932 perm/sec)   p_kst 6.627907e-04   p_cons 2.220930e-03   p_joint 8.720930e-05

Joint ci ratio: 4.496349e-01	ci left: 6.780778e-05	ci right 1.080599e-04	k: 75	n:870000
Cons ci ratio: 8.919971e-02	ci left: 2.116120e-03	ci right 2.314803e-03	k: 1926	n:870000
KS ci ratio: 1.632792e-01	ci left: 6.080111e-04	ci right 7.171971e-04	k: 575	n:870000
MUC20   870000 perm   453 sec   (1919 perm/sec)   p_kst 6.609195e-04   p_cons 2.213793e-03   p_joint 8.620690e-05

Joint ci ratio: 4.496352e-01	ci left: 6.703723e-05	ci right 1.068320e-04	k: 75	n:880000
Cons ci ratio: 8.876335e-02	ci left: 2.113184e-03	ci right 2.310570e-03	k: 1945	n:880000
KS ci ratio: 1.616040e-01	ci left: 6.141840e-04	ci right 7.232371e-04	k: 587	n:880000
MUC20   880000 perm   462 sec   (1906 perm/sec)   p_kst 6.670455e-04   p_cons 2.210227e-03   p_joint 8.522727e-05

Joint ci ratio: 4.496354e-01	ci left: 6.628399e-05	ci right 1.056316e-04	k: 75	n:890000
Cons ci ratio: 8.819848e-02	ci left: 2.116909e-03	ci right 2.313320e-03	k: 1970	n:890000
KS ci ratio: 1.603810e-01	ci left: 6.169881e-04	ci right 7.256302e-04	k: 596	n:890000
MUC20   890000 perm   470 sec   (1892 perm/sec)   p_kst 6.696629e-04   p_cons 2.213483e-03   p_joint 8.426966e-05

Joint ci ratio: 4.438331e-01	ci left: 6.751968e-05	ci right 1.069286e-04	k: 77	n:900000
Cons ci ratio: 8.764425e-02	ci left: 2.120555e-03	ci right 2.316005e-03	k: 1995	n:900000
KS ci ratio: 1.599799e-01	ci left: 6.133323e-04	ci right 7.210346e-04	k: 599	n:900000
MUC20   900000 perm   479 sec   (1879 perm/sec)   p_kst 6.655556e-04   p_cons 2.216667e-03   p_joint 8.555556e-05

Joint ci ratio: 4.438333e-01	ci left: 6.677770e-05	ci right 1.057536e-04	k: 77	n:910000
Cons ci ratio: 8.716521e-02	ci left: 2.120899e-03	ci right 2.315258e-03	k: 2017	n:910000
KS ci ratio: 1.589238e-01	ci left: 6.150329e-04	ci right 7.222528e-04	k: 607	n:910000
MUC20   910000 perm   488 sec   (1865 perm/sec)   p_kst 6.670330e-04   p_cons 2.216484e-03   p_joint 8.461538e-05

Joint ci ratio: 4.899827e-01	ci left: 5.262096e-05	ci right 8.761260e-05	k: 63	n:920000
Cons ci ratio: 8.671524e-02	ci left: 2.120176e-03	ci right 2.313415e-03	k: 2038	n:920000
KS ci ratio: 1.581454e-01	ci left: 6.146107e-04	ci right 7.211825e-04	k: 613	n:920000
MUC20   920000 perm   497 sec   (1852 perm/sec)   p_kst 6.663043e-04   p_cons 2.215217e-03   p_joint 6.847826e-05

Joint ci ratio: 2.412249e-01	ci left: 2.496515e-04	ci right 3.191146e-04	k: 263	n:930000
Cons ci ratio: 8.614652e-02	ci left: 2.125783e-03	ci right 2.318198e-03	k: 2065	n:930000
KS ci ratio: 1.573784e-01	ci left: 6.141989e-04	ci right 7.201340e-04	k: 619	n:930000
MUC20   930000 perm   506 sec   (1840 perm/sec)   p_kst 6.655914e-04   p_cons 2.220430e-03   p_joint 2.827957e-04

Joint ci ratio: 2.403165e-01	ci left: 2.489950e-04	ci right 3.179755e-04	k: 265	n:940000
Cons ci ratio: 8.575326e-02	ci left: 2.122947e-03	ci right 2.314184e-03	k: 2084	n:940000
KS ci ratio: 1.568734e-01	ci left: 6.117528e-04	ci right 7.168955e-04	k: 623	n:940000
MUC20   940000 perm   514 sec   (1827 perm/sec)   p_kst 6.627660e-04   p_cons 2.217021e-03   p_joint 2.819149e-04

Joint ci ratio: 2.389727e-01	ci left: 2.493423e-04	ci right 3.179756e-04	k: 268	n:950000
Cons ci ratio: 8.518293e-02	ci left: 2.129444e-03	ci right 2.319927e-03	k: 2112	n:950000
KS ci ratio: 1.564980e-01	ci left: 6.083473e-04	ci right 7.126310e-04	k: 626	n:950000
MUC20   950000 perm   524 sec   (1814 perm/sec)   p_kst 6.589474e-04   p_cons 2.223158e-03   p_joint 2.821053e-04

Joint ci ratio: 2.385299e-01	ci left: 2.477243e-04	ci right 3.157672e-04	k: 269	n:960000
Cons ci ratio: 8.470317e-02	ci left: 2.131731e-03	ci right 2.321292e-03	k: 2136	n:960000
KS ci ratio: 1.560014e-01	ci left: 6.060141e-04	ci right 7.095373e-04	k: 630	n:960000
MUC20   960000 perm   533 sec   (1802 perm/sec)   p_kst 6.562500e-04   p_cons 2.225000e-03   p_joint 2.802083e-04

Joint ci ratio: 2.376515e-01	ci left: 2.471093e-04	ci right 3.146965e-04	k: 271	n:970000
Cons ci ratio: 8.430966e-02	ci left: 2.129937e-03	ci right 2.318416e-03	k: 2156	n:970000
KS ci ratio: 1.552650e-01	ci left: 6.057112e-04	ci right 7.086487e-04	k: 636	n:970000
MUC20   970000 perm   542 sec   (1791 perm/sec)   p_kst 6.556701e-04   p_cons 2.222680e-03   p_joint 2.793814e-04

Joint ci ratio: 2.372160e-01	ci left: 2.455474e-04	ci right 3.125664e-04	k: 272	n:980000
Cons ci ratio: 8.403774e-02	ci left: 2.122188e-03	ci right 2.309345e-03	k: 2170	n:980000
KS ci ratio: 1.550222e-01	ci left: 6.014919e-04	ci right 7.035377e-04	k: 638	n:980000
MUC20   980000 perm   551 sec   (1779 perm/sec)   p_kst 6.510204e-04   p_cons 2.214286e-03   p_joint 2.775510e-04

Joint ci ratio: 2.359233e-01	ci left: 2.459179e-04	ci right 3.126187e-04	k: 275	n:990000
Cons ci ratio: 8.363427e-02	ci left: 2.121519e-03	ci right 2.307675e-03	k: 2191	n:990000
KS ci ratio: 1.541799e-01	ci left: 6.022134e-04	ci right 7.037753e-04	k: 645	n:990000
MUC20   990000 perm   560 sec   (1767 perm/sec)   p_kst 6.515152e-04   p_cons 2.213131e-03   p_joint 2.777778e-04

Joint ci ratio: 2.350732e-01	ci left: 2.453407e-04	ci right 3.116103e-04	k: 277	n:1000000
Cons ci ratio: 8.319888e-02	ci left: 2.122824e-03	ci right 2.308078e-03	k: 2214	n:1000000
KS ci ratio: 1.535868e-01	ci left: 6.009987e-04	ci right 7.019300e-04	k: 650	n:1000000
MUC20   1000000 perm   570 sec   (1756 perm/sec)   p_kst 6.500000e-04   p_cons 2.214000e-03   p_joint 2.770000e-04

Joint ci ratio: 2.325764e-01	ci left: 2.485042e-04	ci right 3.148130e-04	k: 283	n:1010000
Cons ci ratio: 8.280731e-02	ci left: 2.122167e-03	ci right 2.306449e-03	k: 2235	n:1010000
KS ci ratio: 1.531173e-01	ci left: 5.988566e-04	ci right 6.990925e-04	k: 654	n:1010000
MUC20   1010000 perm   579 sec   (1744 perm/sec)   p_kst 6.475248e-04   p_cons 2.212871e-03   p_joint 2.801980e-04

Joint ci ratio: 2.313576e-01	ci left: 2.488382e-04	ci right 3.148384e-04	k: 286	n:1020000
Cons ci ratio: 8.251287e-02	ci left: 2.116723e-03	ci right 2.299848e-03	k: 2251	n:1020000
KS ci ratio: 1.523056e-01	ci left: 5.995860e-04	ci right 6.993634e-04	k: 661	n:1020000
MUC20   1020000 perm   589 sec   (1733 perm/sec)   p_kst 6.480392e-04   p_cons 2.206863e-03   p_joint 2.803922e-04

Joint ci ratio: 2.309558e-01	ci left: 2.473369e-04	ci right 3.128087e-04	k: 287	n:1030000
Cons ci ratio: 8.207660e-02	ci left: 2.118994e-03	ci right 2.301300e-03	k: 2275	n:1030000
KS ci ratio: 1.518477e-01	ci left: 5.975005e-04	ci right 6.966047e-04	k: 665	n:1030000
MUC20   1030000 perm   598 sec   (1722 perm/sec)   p_kst 6.456311e-04   p_cons 2.208738e-03   p_joint 2.786408e-04

Joint ci ratio: 2.317625e-01	ci left: 2.431470e-04	ci right 3.077667e-04	k: 285	n:1040000
Cons ci ratio: 8.171843e-02	ci left: 2.117456e-03	ci right 2.298796e-03	k: 2295	n:1040000
KS ci ratio: 1.511683e-01	ci left: 5.973058e-04	ci right 6.958944e-04	k: 671	n:1040000
MUC20   1040000 perm   608 sec   (1710 perm/sec)   p_kst 6.451923e-04   p_cons 2.206731e-03   p_joint 2.740385e-04

Joint ci ratio: 2.281991e-01	ci left: 2.489090e-04	ci right 3.138998e-04	k: 294	n:1050000
Cons ci ratio: 8.136490e-02	ci left: 2.115948e-03	ci right 2.296339e-03	k: 2315	n:1050000
KS ci ratio: 1.502764e-01	ci left: 5.989489e-04	ci right 6.971729e-04	k: 679	n:1050000
MUC20   1050000 perm   618 sec   (1698 perm/sec)   p_kst 6.466667e-04   p_cons 2.204762e-03   p_joint 2.800000e-04

Joint ci ratio: 2.274295e-01	ci left: 2.483400e-04	ci right 3.129328e-04	k: 296	n:1060000
Cons ci ratio: 8.108553e-02	ci left: 2.110774e-03	ci right 2.290077e-03	k: 2331	n:1060000
KS ci ratio: 1.497270e-01	ci left: 5.978384e-04	ci right 6.954898e-04	k: 684	n:1060000
MUC20   1060000 perm   628 sec   (1687 perm/sec)   p_kst 6.452830e-04   p_cons 2.199057e-03   p_joint 2.792453e-04

Joint ci ratio: 2.274298e-01	ci left: 2.460190e-04	ci right 3.100082e-04	k: 296	n:1070000
Cons ci ratio: 8.079177e-02	ci left: 2.106613e-03	ci right 2.284883e-03	k: 2348	n:1070000
KS ci ratio: 1.495092e-01	ci left: 5.940502e-04	ci right 6.909290e-04	k: 686	n:1070000
MUC20   1070000 perm   638 sec   (1676 perm/sec)   p_kst 6.411215e-04   p_cons 2.194393e-03   p_joint 2.766355e-04

Joint ci ratio: 2.262898e-01	ci left: 2.463610e-04	ci right 3.100732e-04	k: 299	n:1080000
Cons ci ratio: 8.041607e-02	ci left: 2.107068e-03	ci right 2.284508e-03	k: 2370	n:1080000
KS ci ratio: 1.484326e-01	ci left: 5.974639e-04	ci right 6.941356e-04	k: 696	n:1080000
MUC20   1080000 perm   649 sec   (1665 perm/sec)   p_kst 6.444444e-04   p_cons 2.194444e-03   p_joint 2.768519e-04

Joint ci ratio: 2.255393e-01	ci left: 2.458318e-04	ci right 3.091670e-04	k: 301	n:1090000
Cons ci ratio: 8.011269e-02	ci left: 2.103919e-03	ci right 2.280395e-03	k: 2388	n:1090000
KS ci ratio: 1.480087e-01	ci left: 5.955162e-04	ci right 6.915732e-04	k: 700	n:1090000
MUC20   1090000 perm   659 sec   (1655 perm/sec)   p_kst 6.422018e-04   p_cons 2.190826e-03   p_joint 2.761468e-04

Joint ci ratio: 2.244273e-01	ci left: 2.461706e-04	ci right 3.092371e-04	k: 304	n:1100000
Cons ci ratio: 7.974635e-02	ci left: 2.104393e-03	ci right 2.280063e-03	k: 2410	n:1100000
KS ci ratio: 1.473793e-01	ci left: 5.953554e-04	ci right 6.909421e-04	k: 706	n:1100000
MUC20   1100000 perm   669 sec   (1645 perm/sec)   p_kst 6.418182e-04   p_cons 2.190909e-03   p_joint 2.763636e-04

Joint ci ratio: 2.233316e-01	ci left: 2.465040e-04	ci right 3.093052e-04	k: 307	n:1110000
Cons ci ratio: 7.935230e-02	ci left: 2.106626e-03	ci right 2.281574e-03	k: 2434	n:1110000
KS ci ratio: 1.470679e-01	ci left: 5.925949e-04	ci right 6.875197e-04	k: 709	n:1110000
MUC20   1110000 perm   679 sec   (1635 perm/sec)   p_kst 6.387387e-04   p_cons 2.192793e-03   p_joint 2.765766e-04

Joint ci ratio: 2.226101e-01	ci left: 2.459890e-04	ci right 3.084288e-04	k: 309	n:1120000
Cons ci ratio: 7.901235e-02	ci left: 2.106195e-03	ci right 2.280324e-03	k: 2455	n:1120000
KS ci ratio: 1.467584e-01	ci left: 5.898839e-04	ci right 6.841581e-04	k: 712	n:1120000
MUC20   1120000 perm   689 sec   (1625 perm/sec)   p_kst 6.357143e-04   p_cons 2.191964e-03   p_joint 2.758929e-04

Joint ci ratio: 4.043001e-01	ci left: 6.642793e-05	ci right 1.008232e-04	k: 93	n:1130000
Cons ci ratio: 7.859728e-02	ci left: 2.110112e-03	ci right 2.283606e-03	k: 2481	n:1130000
KS ci ratio: 1.464508e-01	ci left: 5.872211e-04	ci right 6.808559e-04	k: 715	n:1130000
MUC20   1130000 perm   699 sec   (1616 perm/sec)   p_kst 6.327434e-04   p_cons 2.195575e-03   p_joint 8.230088e-05

Joint ci ratio: 4.043003e-01	ci left: 6.584523e-05	ci right 9.993880e-05	k: 93	n:1140000
Cons ci ratio: 7.817306e-02	ci left: 2.114822e-03	ci right 2.287722e-03	k: 2508	n:1140000
KS ci ratio: 1.456393e-01	ci left: 5.888312e-04	ci right 6.821572e-04	k: 723	n:1140000
MUC20   1140000 perm   710 sec   (1607 perm/sec)   p_kst 6.342105e-04   p_cons 2.200000e-03   p_joint 8.157895e-05

Joint ci ratio: 4.043004e-01	ci left: 6.527266e-05	ci right 9.906978e-05	k: 93	n:1150000
Cons ci ratio: 7.780177e-02	ci left: 2.116895e-03	ci right 2.289106e-03	k: 2532	n:1150000
KS ci ratio: 1.449403e-01	ci left: 5.895767e-04	ci right 6.825335e-04	k: 730	n:1150000
MUC20   1150000 perm   720 sec   (1597 perm/sec)   p_kst 6.347826e-04   p_cons 2.201739e-03   p_joint 8.086957e-05

Joint ci ratio: 4.000666e-01	ci left: 6.625969e-05	ci right 1.001134e-04	k: 95	n:1160000
Cons ci ratio: 7.751171e-02	ci left: 2.114707e-03	ci right 2.286069e-03	k: 2551	n:1160000
KS ci ratio: 1.446440e-01	ci left: 5.869866e-04	ci right 6.793295e-04	k: 733	n:1160000
MUC20   1160000 perm   730 sec   (1588 perm/sec)   p_kst 6.318966e-04   p_cons 2.199138e-03   p_joint 8.189655e-05

Joint ci ratio: 3.979990e-01	ci left: 6.646229e-05	ci right 1.001977e-04	k: 96	n:1170000
Cons ci ratio: 7.727006e-02	ci left: 2.110043e-03	ci right 2.280470e-03	k: 2567	n:1170000
KS ci ratio: 1.437651e-01	ci left: 5.893844e-04	ci right 6.814929e-04	k: 742	n:1170000
MUC20   1170000 perm   741 sec   (1579 perm/sec)   p_kst 6.341880e-04   p_cons 2.194017e-03   p_joint 8.205128e-05

Joint ci ratio: 3.959632e-01	ci left: 6.666190e-05	ci right 1.002803e-04	k: 97	n:1180000
Cons ci ratio: 7.706055e-02	ci left: 2.103797e-03	ci right 2.273238e-03	k: 2581	n:1180000
KS ci ratio: 1.429972e-01	ci left: 5.909261e-04	ci right 6.827402e-04	k: 750	n:1180000
MUC20   1180000 perm   751 sec   (1570 perm/sec)   p_kst 6.355932e-04   p_cons 2.187288e-03   p_joint 8.220339e-05

Joint ci ratio: 3.959633e-01	ci left: 6.610171e-05	ci right 9.943757e-05	k: 97	n:1190000
Cons ci ratio: 7.683790e-02	ci left: 2.098480e-03	ci right 2.266983e-03	k: 2596	n:1190000
KS ci ratio: 1.421479e-01	ci left: 5.932536e-04	ci right 6.848354e-04	k: 759	n:1190000
MUC20   1190000 perm   762 sec   (1561 perm/sec)   p_kst 6.378151e-04   p_cons 2.181513e-03   p_joint 8.151261e-05

Joint ci ratio: 3.919835e-01	ci left: 6.705242e-05	ci right 1.004399e-04	k: 99	n:1200000
Cons ci ratio: 7.649986e-02	ci left: 2.099792e-03	ci right 2.267625e-03	k: 2619	n:1200000
KS ci ratio: 1.414977e-01	ci left: 5.939362e-04	ci right 6.851686e-04	k: 766	n:1200000
MUC20   1200000 perm   773 sec   (1552 perm/sec)   p_kst 6.383333e-04   p_cons 2.182500e-03   p_joint 8.250000e-05

Joint ci ratio: 3.919836e-01	ci left: 6.649826e-05	ci right 9.960981e-05	k: 99	n:1210000
Cons ci ratio: 7.622406e-02	ci left: 2.097841e-03	ci right 2.264887e-03	k: 2638	n:1210000
KS ci ratio: 1.411303e-01	ci left: 5.922165e-04	ci right 6.829287e-04	k: 770	n:1210000
MUC20   1210000 perm   784 sec   (1544 perm/sec)   p_kst 6.363636e-04   p_cons 2.180165e-03   p_joint 8.181818e-05

Joint ci ratio: 3.881215e-01	ci left: 6.743177e-05	ci right 1.005927e-04	k: 101	n:1220000
Cons ci ratio: 7.602292e-02	ci left: 2.091902e-03	ci right 2.258016e-03	k: 2652	n:1220000
KS ci ratio: 1.406750e-01	ci left: 5.913162e-04	ci right 6.815737e-04	k: 775	n:1220000
MUC20   1220000 perm   795 sec   (1535 perm/sec)   p_kst 6.352459e-04   p_cons 2.173770e-03   p_joint 8.278689e-05

Joint ci ratio: 3.862327e-01	ci left: 6.761741e-05	ci right 1.006666e-04	k: 102	n:1230000
Cons ci ratio: 7.568130e-02	ci left: 2.094037e-03	ci right 2.259541e-03	k: 2676	n:1230000
KS ci ratio: 1.399553e-01	ci left: 5.927845e-04	ci right 6.827646e-04	k: 783	n:1230000
MUC20   1230000 perm   806 sec   (1526 perm/sec)   p_kst 6.365854e-04   p_cons 2.175610e-03   p_joint 8.292683e-05

Joint ci ratio: 3.862329e-01	ci left: 6.707210e-05	ci right 9.985480e-05	k: 102	n:1240000
Cons ci ratio: 7.531631e-02	ci left: 2.097722e-03	ci right 2.262682e-03	k: 2702	n:1240000
KS ci ratio: 1.395998e-01	ci left: 5.911169e-04	ci right 6.805971e-04	k: 787	n:1240000
MUC20   1240000 perm   817 sec   (1518 perm/sec)   p_kst 6.346774e-04   p_cons 2.179032e-03   p_joint 8.225806e-05

Joint ci ratio: 3.862330e-01	ci left: 6.653552e-05	ci right 9.905597e-05	k: 102	n:1250000
Cons ci ratio: 7.510840e-02	ci left: 2.092714e-03	ci right 2.256806e-03	k: 2717	n:1250000
KS ci ratio: 1.392469e-01	ci left: 5.894763e-04	ci right 6.784639e-04	k: 791	n:1250000
MUC20   1250000 perm   828 sec   (1510 perm/sec)   p_kst 6.328000e-04   p_cons 2.173600e-03   p_joint 8.160000e-05

Joint ci ratio: 3.843716e-01	ci left: 6.672424e-05	ci right 9.913998e-05	k: 103	n:1260000
Cons ci ratio: 7.486103e-02	ci left: 2.090123e-03	ci right 2.253449e-03	k: 2735	n:1260000
KS ci ratio: 1.385489e-01	ci left: 5.909265e-04	ci right 6.796489e-04	k: 799	n:1260000
MUC20   1260000 perm   839 sec   (1501 perm/sec)   p_kst 6.341270e-04   p_cons 2.170635e-03   p_joint 8.174603e-05

Joint ci ratio: 3.244027e-01	ci left: 9.634716e-05	ci right 1.343410e-04	k: 145	n:1270000
Cons ci ratio: 8.411729e-02	ci left: 1.635264e-03	ci right 1.779622e-03	k: 2167	n:1270000
KS ci ratio: 1.373518e-01	ci left: 5.969169e-04	ci right 6.857010e-04	k: 813	n:1270000
MUC20   1270000 perm   851 sec   (1493 perm/sec)   p_kst 6.401575e-04   p_cons 1.706299e-03   p_joint 1.141732e-04

Joint ci ratio: 3.244029e-01	ci left: 9.559444e-05	ci right 1.332915e-04	k: 145	n:1280000
Cons ci ratio: 8.373186e-02	ci left: 1.637786e-03	ci right 1.781671e-03	k: 2187	n:1280000
KS ci ratio: 1.368484e-01	ci left: 5.967802e-04	ci right 6.851922e-04	k: 819	n:1280000
MUC20   1280000 perm   862 sec   (1485 perm/sec)   p_kst 6.398438e-04   p_cons 1.708594e-03   p_joint 1.132813e-04

Joint ci ratio: 3.222034e-01	ci left: 9.627799e-05	ci right 1.339340e-04	k: 147	n:1290000
Cons ci ratio: 8.354140e-02	ci left: 1.632679e-03	ci right 1.775774e-03	k: 2197	n:1290000
KS ci ratio: 1.361034e-01	ci left: 5.988926e-04	ci right 6.870954e-04	k: 828	n:1290000
MUC20   1290000 perm   874 sec   (1476 perm/sec)   p_kst 6.418605e-04   p_cons 1.703101e-03   p_joint 1.139535e-04

Joint ci ratio: 3.222035e-01	ci left: 9.553738e-05	ci right 1.329037e-04	k: 147	n:1300000
Cons ci ratio: 8.327671e-02	ci left: 1.630665e-03	ci right 1.773108e-03	k: 2211	n:1300000
KS ci ratio: 1.356949e-01	ci left: 5.980011e-04	ci right 6.857869e-04	k: 833	n:1300000
MUC20   1300000 perm   885 sec   (1468 perm/sec)   p_kst 6.407692e-04   p_cons 1.700769e-03   p_joint 1.130769e-04

Joint ci ratio: 3.200482e-01	ci left: 9.621176e-05	ci right 1.335386e-04	k: 149	n:1310000
Cons ci ratio: 8.292128e-02	ci left: 1.632420e-03	ci right 1.774378e-03	k: 2230	n:1310000
KS ci ratio: 1.354517e-01	ci left: 5.956485e-04	ci right 6.829196e-04	k: 836	n:1310000
MUC20   1310000 perm   897 sec   (1460 perm/sec)   p_kst 6.381679e-04   p_cons 1.702290e-03   p_joint 1.137405e-04

Joint ci ratio: 3.189867e-01	ci left: 9.617971e-05	ci right 1.333450e-04	k: 150	n:1320000
Cons ci ratio: 8.260715e-02	ci left: 1.632665e-03	ci right 1.774081e-03	k: 2247	n:1320000
KS ci ratio: 1.346495e-01	ci left: 5.984559e-04	ci right 6.855775e-04	k: 846	n:1320000
MUC20   1320000 perm   909 sec   (1452 perm/sec)   p_kst 6.409091e-04   p_cons 1.702273e-03   p_joint 1.136364e-04

Joint ci ratio: 3.168949e-01	ci left: 9.684034e-05	ci right 1.339658e-04	k: 152	n:1330000
Cons ci ratio: 8.240597e-02	ci left: 1.628489e-03	ci right 1.769184e-03	k: 2258	n:1330000
KS ci ratio: 1.341751e-01	ci left: 5.983158e-04	ci right 6.850857e-04	k: 852	n:1330000
MUC20   1330000 perm   921 sec   (1445 perm/sec)   p_kst 6.406015e-04   p_cons 1.697744e-03   p_joint 1.142857e-04

Joint ci ratio: 3.148436e-01	ci left: 9.749188e-05	ci right 1.345765e-04	k: 154	n:1340000
Cons ci ratio: 7.270117e-02	ci left: 2.086202e-03	ci right 2.244320e-03	k: 2900	n:1340000
KS ci ratio: 1.339400e-01	ci left: 5.960144e-04	ci right 6.822870e-04	k: 855	n:1340000
MUC20   1340000 perm   932 sec   (1437 perm/sec)   p_kst 6.380597e-04   p_cons 2.164179e-03   p_joint 1.149254e-04

Joint ci ratio: 3.148438e-01	ci left: 9.676972e-05	ci right 1.335796e-04	k: 154	n:1350000
Cons ci ratio: 7.243947e-02	ci left: 2.086022e-03	ci right 2.243533e-03	k: 2921	n:1350000
KS ci ratio: 1.336283e-01	ci left: 5.944633e-04	ci right 6.802951e-04	k: 859	n:1350000
MUC20   1350000 perm   944 sec   (1430 perm/sec)   p_kst 6.362963e-04   p_cons 2.163704e-03   p_joint 1.140741e-04

Joint ci ratio: 3.148439e-01	ci left: 9.605817e-05	ci right 1.325974e-04	k: 154	n:1360000
Cons ci ratio: 7.219287e-02	ci left: 2.085124e-03	ci right 2.242008e-03	k: 2941	n:1360000
KS ci ratio: 1.331646e-01	ci left: 5.943568e-04	ci right 6.798519e-04	k: 865	n:1360000
MUC20   1360000 perm   957 sec   (1422 perm/sec)   p_kst 6.360294e-04   p_cons 2.162500e-03   p_joint 1.132353e-04

Joint ci ratio: 3.118404e-01	ci left: 9.737463e-05	ci right 1.339910e-04	k: 157	n:1370000
Cons ci ratio: 7.191229e-02	ci left: 2.086390e-03	ci right 2.242734e-03	k: 2964	n:1370000
KS ci ratio: 1.324021e-01	ci left: 5.970753e-04	ci right 6.824310e-04	k: 875	n:1370000
MUC20   1370000 perm   969 sec   (1414 perm/sec)   p_kst 6.386861e-04   p_cons 2.163504e-03   p_joint 1.145985e-04

Joint ci ratio: 3.089211e-01	ci left: 9.867364e-05	ci right 1.353627e-04	k: 160	n:1380000
Cons ci ratio: 7.158694e-02	ci left: 2.090485e-03	ci right 2.246398e-03	k: 2991	n:1380000
KS ci ratio: 1.321762e-01	ci left: 5.948505e-04	ci right 6.797317e-04	k: 878	n:1380000
MUC20   1380000 perm   981 sec   (1406 perm/sec)   p_kst 6.362319e-04   p_cons 2.167391e-03   p_joint 1.159420e-04

Joint ci ratio: 3.070200e-01	ci left: 9.929144e-05	ci right 1.359386e-04	k: 162	n:1390000
Cons ci ratio: 7.139644e-02	ci left: 2.086751e-03	ci right 2.241954e-03	k: 3007	n:1390000
KS ci ratio: 1.315787e-01	ci left: 5.961366e-04	ci right 6.807867e-04	k: 886	n:1390000
MUC20   1390000 perm   994 sec   (1399 perm/sec)   p_kst 6.374101e-04   p_cons 2.163309e-03   p_joint 1.165468e-04

Joint ci ratio: 3.070201e-01	ci left: 9.858221e-05	ci right 1.349676e-04	k: 162	n:1400000
Cons ci ratio: 7.114853e-02	ci left: 2.086578e-03	ci right 2.241207e-03	k: 3028	n:1400000
KS ci ratio: 1.314308e-01	ci left: 5.932600e-04	ci right 6.773995e-04	k: 888	n:1400000
MUC20   1400000 perm   1006 sec   (1392 perm/sec)   p_kst 6.342857e-04   p_cons 2.162857e-03   p_joint 1.157143e-04

Joint ci ratio: 5.147104e-01	ci left: 3.061804e-05	ci right 5.237565e-05	k: 57	n:1410000
Cons ci ratio: 7.091484e-02	ci left: 2.085712e-03	ci right 2.239748e-03	k: 3048	n:1410000
KS ci ratio: 1.312097e-01	ci left: 5.911102e-04	ci right 6.747929e-04	k: 891	n:1410000
MUC20   1410000 perm   1018 sec   (1385 perm/sec)   p_kst 6.319149e-04   p_cons 2.161702e-03   p_joint 4.042553e-05

Joint ci ratio: 5.147105e-01	ci left: 3.040242e-05	ci right 5.200681e-05	k: 57	n:1420000
Cons ci ratio: 7.077594e-02	ci left: 2.079325e-03	ci right 2.232576e-03	k: 3060	n:1420000
KS ci ratio: 1.309898e-01	ci left: 5.889908e-04	ci right 6.722228e-04	k: 894	n:1420000
MUC20   1420000 perm   1031 sec   (1377 perm/sec)   p_kst 6.295775e-04   p_cons 2.154930e-03   p_joint 4.014085e-05

Joint ci ratio: 5.103298e-01	ci left: 3.079862e-05	ci right 5.243217e-05	k: 58	n:1430000
Cons ci ratio: 7.059183e-02	ci left: 2.075775e-03	ci right 2.228351e-03	k: 3076	n:1430000
KS ci ratio: 1.303360e-01	ci left: 5.909600e-04	ci right 6.740212e-04	k: 903	n:1430000
MUC20   1430000 perm   1043 sec   (1371 perm/sec)   p_kst 6.314685e-04   p_cons 2.151049e-03   p_joint 4.055944e-05

Joint ci ratio: 5.103299e-01	ci left: 3.058474e-05	ci right 5.206806e-05	k: 58	n:1440000
Cons ci ratio: 7.032943e-02	ci left: 2.077051e-03	ci right 2.229129e-03	k: 3099	n:1440000
KS ci ratio: 1.298343e-01	ci left: 5.915590e-04	ci right 6.743597e-04	k: 910	n:1440000
MUC20   1440000 perm   1056 sec   (1364 perm/sec)   p_kst 6.319444e-04   p_cons 2.152083e-03   p_joint 4.027778e-05

Joint ci ratio: 5.103300e-01	ci left: 3.037381e-05	ci right 5.170897e-05	k: 58	n:1450000
Cons ci ratio: 7.006994e-02	ci left: 2.078310e-03	ci right 2.229897e-03	k: 3122	n:1450000
KS ci ratio: 1.294088e-01	ci left: 5.914831e-04	ci right 6.739810e-04	k: 916	n:1450000
MUC20   1450000 perm   1068 sec   (1358 perm/sec)   p_kst 6.317241e-04   p_cons 2.153103e-03   p_joint 4.000000e-05

Joint ci ratio: 5.103300e-01	ci left: 3.016577e-05	ci right 5.135480e-05	k: 58	n:1460000
Cons ci ratio: 6.982442e-02	ci left: 2.078880e-03	ci right 2.229955e-03	k: 3144	n:1460000
KS ci ratio: 1.288479e-01	ci left: 5.927343e-04	ci right 6.750210e-04	k: 924	n:1460000
MUC20   1460000 perm   1080 sec   (1351 perm/sec)   p_kst 6.328767e-04   p_cons 2.153425e-03   p_joint 3.972603e-05

Joint ci ratio: 5.103301e-01	ci left: 2.996056e-05	ci right 5.100545e-05	k: 58	n:1470000
Cons ci ratio: 6.952648e-02	ci left: 2.082785e-03	ci right 2.233473e-03	k: 3171	n:1470000
KS ci ratio: 1.285703e-01	ci left: 5.913355e-04	ci right 6.732377e-04	k: 928	n:1470000
MUC20   1470000 perm   1093 sec   (1345 perm/sec)   p_kst 6.312925e-04   p_cons 2.157143e-03   p_joint 3.945578e-05

Joint ci ratio: 5.060594e-01	ci left: 3.034712e-05	ci right 5.142247e-05	k: 59	n:1480000
Cons ci ratio: 6.917817e-02	ci left: 2.089959e-03	ci right 2.240378e-03	k: 3203	n:1480000
KS ci ratio: 1.281572e-01	ci left: 5.912639e-04	ci right 6.728729e-04	k: 934	n:1480000
MUC20   1480000 perm   1106 sec   (1339 perm/sec)   p_kst 6.310811e-04   p_cons 2.164189e-03   p_joint 3.986486e-05

Joint ci ratio: 5.018941e-01	ci left: 3.072921e-05	ci right 5.183319e-05	k: 60	n:1490000
Cons ci ratio: 6.899548e-02	ci left: 2.087145e-03	ci right 2.236948e-03	k: 3220	n:1490000
KS ci ratio: 1.277479e-01	ci left: 5.911936e-04	ci right 6.725127e-04	k: 940	n:1490000
MUC20   1490000 perm   1118 sec   (1332 perm/sec)   p_kst 6.308725e-04   p_cons 2.161074e-03   p_joint 4.026846e-05

Joint ci ratio: 5.018942e-01	ci left: 3.052435e-05	ci right 5.148763e-05	k: 60	n:1500000
Cons ci ratio: 6.876104e-02	ci left: 2.087645e-03	ci right 2.236955e-03	k: 3242	n:1500000
KS ci ratio: 1.274774e-01	ci left: 5.898339e-04	ci right 6.707811e-04	k: 944	n:1500000
MUC20   1500000 perm   1131 sec   (1326 perm/sec)   p_kst 6.293333e-04   p_cons 2.161333e-03   p_joint 4.000000e-05

Joint ci ratio: 5.018943e-01	ci left: 3.032220e-05	ci right 5.114666e-05	k: 60	n:1510000
Cons ci ratio: 6.848695e-02	ci left: 2.090742e-03	ci right 2.239654e-03	k: 3268	n:1510000
KS ci ratio: 1.271415e-01	ci left: 5.891335e-04	ci right 6.697555e-04	k: 949	n:1510000
MUC20   1510000 perm   1144 sec   (1320 perm/sec)   p_kst 6.284768e-04   p_cons 2.164238e-03   p_joint 3.973510e-05

Joint ci ratio: 5.018943e-01	ci left: 3.012271e-05	ci right 5.081017e-05	k: 60	n:1520000
Cons ci ratio: 6.828885e-02	ci left: 2.089274e-03	ci right 2.237633e-03	k: 3287	n:1520000
KS ci ratio: 1.267419e-01	ci left: 5.890796e-04	ci right 6.694218e-04	k: 955	n:1520000
MUC20   1520000 perm   1157 sec   (1313 perm/sec)   p_kst 6.282895e-04   p_cons 2.162500e-03   p_joint 3.947368e-05

Joint ci ratio: 5.018944e-01	ci left: 2.992583e-05	ci right 5.047808e-05	k: 60	n:1530000
Cons ci ratio: 6.811310e-02	ci left: 2.086540e-03	ci right 2.234309e-03	k: 3304	n:1530000
KS ci ratio: 1.264777e-01	ci left: 5.877610e-04	ci right 6.677437e-04	k: 959	n:1530000
MUC20   1530000 perm   1171 sec   (1307 perm/sec)   p_kst 6.267974e-04   p_cons 2.159477e-03   p_joint 3.921569e-05

Joint ci ratio: 5.018945e-01	ci left: 2.973150e-05	ci right 5.015030e-05	k: 60	n:1540000
Cons ci ratio: 6.783645e-02	ci left: 2.090226e-03	ci right 2.237631e-03	k: 3331	n:1540000
KS ci ratio: 1.262807e-01	ci left: 5.858308e-04	ci right 6.654174e-04	k: 962	n:1540000
MUC20   1540000 perm   1184 sec   (1301 perm/sec)   p_kst 6.246753e-04   p_cons 2.162987e-03   p_joint 3.896104e-05

Joint ci ratio: 5.018945e-01	ci left: 2.953969e-05	ci right 4.982675e-05	k: 60	n:1550000
Cons ci ratio: 6.768441e-02	ci left: 2.086254e-03	ci right 2.233036e-03	k: 3346	n:1550000
KS ci ratio: 1.259542e-01	ci left: 5.851752e-04	ci right 6.644519e-04	k: 967	n:1550000
MUC20   1550000 perm   1197 sec   (1295 perm/sec)   p_kst 6.238710e-04   p_cons 2.158710e-03   p_joint 3.870968e-05

Joint ci ratio: 4.978304e-01	ci left: 2.991049e-05	ci right 5.022860e-05	k: 61	n:1560000
Cons ci ratio: 6.750322e-02	ci left: 2.084224e-03	ci right 2.230455e-03	k: 3364	n:1560000
KS ci ratio: 1.255656e-01	ci left: 5.851493e-04	ci right 6.641597e-04	k: 973	n:1560000
MUC20   1560000 perm   1210 sec   (1289 perm/sec)   p_kst 6.237179e-04   p_cons 2.156410e-03   p_joint 3.910256e-05

Joint ci ratio: 4.938635e-01	ci left: 3.027723e-05	ci right 5.062469e-05	k: 62	n:1570000
Cons ci ratio: 6.731351e-02	ci left: 2.082846e-03	ci right 2.228554e-03	k: 3383	n:1570000
KS ci ratio: 1.251807e-01	ci left: 5.851240e-04	ci right 6.638708e-04	k: 979	n:1570000
MUC20   1570000 perm   1224 sec   (1283 perm/sec)   p_kst 6.235669e-04   p_cons 2.154777e-03   p_joint 3.949045e-05

Joint ci ratio: 4.938636e-01	ci left: 3.008560e-05	ci right 5.030428e-05	k: 62	n:1580000
Cons ci ratio: 6.705630e-02	ci left: 2.085843e-03	ci right 2.231181e-03	k: 3409	n:1580000
KS ci ratio: 1.247360e-01	ci left: 5.857126e-04	ci right 6.642379e-04	k: 986	n:1580000
MUC20   1580000 perm   1237 sec   (1277 perm/sec)   p_kst 6.240506e-04   p_cons 2.157595e-03   p_joint 3.924051e-05

Joint ci ratio: 4.899900e-01	ci left: 3.044726e-05	ci right 5.069429e-05	k: 63	n:1590000
Cons ci ratio: 6.680202e-02	ci left: 2.088803e-03	ci right 2.233775e-03	k: 3435	n:1590000
KS ci ratio: 1.244213e-01	ci left: 5.850755e-04	ci right 6.633029e-04	k: 991	n:1590000
MUC20   1590000 perm   1251 sec   (1271 perm/sec)   p_kst 6.232704e-04   p_cons 2.160377e-03   p_joint 3.962264e-05

Joint ci ratio: 4.899900e-01	ci left: 3.025696e-05	ci right 5.037745e-05	k: 63	n:1600000
Cons ci ratio: 6.660848e-02	ci left: 2.088039e-03	ci right 2.232522e-03	k: 3455	n:1600000
KS ci ratio: 1.241712e-01	ci left: 5.838410e-04	ci right 6.617350e-04	k: 995	n:1600000
MUC20   1600000 perm   1265 sec   (1265 perm/sec)   p_kst 6.218750e-04   p_cons 2.159375e-03   p_joint 3.937500e-05

Joint ci ratio: 4.899901e-01	ci left: 3.006903e-05	ci right 5.006455e-05	k: 63	n:1610000
Cons ci ratio: 6.643577e-02	ci left: 2.086064e-03	ci right 2.230022e-03	k: 3473	n:1610000
KS ci ratio: 1.236755e-01	ci left: 5.850296e-04	ci right 6.627477e-04	k: 1003	n:1610000
MUC20   1610000 perm   1278 sec   (1259 perm/sec)   p_kst 6.229814e-04   p_cons 2.157143e-03   p_joint 3.913043e-05

Joint ci ratio: 4.899902e-01	ci left: 2.988342e-05	ci right 4.975551e-05	k: 63	n:1620000
Cons ci ratio: 6.617898e-02	ci left: 2.089578e-03	ci right 2.233199e-03	k: 3500	n:1620000
KS ci ratio: 1.231248e-01	ci left: 5.868024e-04	ci right 6.643836e-04	k: 1012	n:1620000
MUC20   1620000 perm   1292 sec   (1253 perm/sec)   p_kst 6.246914e-04   p_cons 2.160494e-03   p_joint 3.888889e-05

Joint ci ratio: 4.899902e-01	ci left: 2.970008e-05	ci right 4.945027e-05	k: 63	n:1630000
Cons ci ratio: 6.597202e-02	ci left: 2.090032e-03	ci right 2.233218e-03	k: 3522	n:1630000
KS ci ratio: 1.227015e-01	ci left: 5.873649e-04	ci right 6.647340e-04	k: 1019	n:1630000
MUC20   1630000 perm   1307 sec   (1247 perm/sec)   p_kst 6.251534e-04   p_cons 2.160736e-03   p_joint 3.865031e-05

Joint ci ratio: 4.899903e-01	ci left: 2.951898e-05	ci right 4.914874e-05	k: 63	n:1640000
Cons ci ratio: 6.585081e-02	ci left: 2.085084e-03	ci right 2.227659e-03	k: 3535	n:1640000
KS ci ratio: 1.223422e-01	ci left: 5.873298e-04	ci right 6.644514e-04	k: 1025	n:1640000
MUC20   1640000 perm   1321 sec   (1242 perm/sec)   p_kst 6.250000e-04   p_cons 2.155488e-03   p_joint 3.841463e-05

Joint ci ratio: 4.899903e-01	ci left: 2.934008e-05	ci right 4.885087e-05	k: 63	n:1650000
Cons ci ratio: 6.565615e-02	ci left: 2.084965e-03	ci right 2.227094e-03	k: 3556	n:1650000
KS ci ratio: 1.221045e-01	ci left: 5.861203e-04	ci right 6.629228e-04	k: 1029	n:1650000
MUC20   1650000 perm   1335 sec   (1236 perm/sec)   p_kst 6.236364e-04   p_cons 2.155152e-03   p_joint 3.818182e-05

Joint ci ratio: 4.899904e-01	ci left: 2.916333e-05	ci right 4.855659e-05	k: 63	n:1660000
Cons ci ratio: 6.539912e-02	ci left: 2.088997e-03	ci right 2.230822e-03	k: 3584	n:1660000
KS ci ratio: 1.216330e-01	ci left: 5.872619e-04	ci right 6.638953e-04	k: 1037	n:1660000
MUC20   1660000 perm   1349 sec   (1231 perm/sec)   p_kst 6.246988e-04   p_cons 2.159036e-03   p_joint 3.795181e-05

Joint ci ratio: 4.862066e-01	ci left: 2.951377e-05	ci right 4.893781e-05	k: 64	n:1670000
Cons ci ratio: 6.517221e-02	ci left: 2.091213e-03	ci right 2.232678e-03	k: 3609	n:1670000
KS ci ratio: 1.213412e-01	ci left: 5.866483e-04	ci right 6.630049e-04	k: 1042	n:1670000
MUC20   1670000 perm   1363 sec   (1225 perm/sec)   p_kst 6.239521e-04   p_cons 2.161078e-03   p_joint 3.832335e-05

Joint ci ratio: 4.825090e-01	ci left: 2.986062e-05	ci right 4.931393e-05	k: 65	n:1680000
Cons ci ratio: 6.503736e-02	ci left: 2.087549e-03	ci right 2.228462e-03	k: 3624	n:1680000
KS ci ratio: 1.209936e-01	ci left: 5.866196e-04	ci right 6.627381e-04	k: 1048	n:1680000
MUC20   1680000 perm   1378 sec   (1220 perm/sec)   p_kst 6.238095e-04   p_cons 2.157143e-03   p_joint 3.869048e-05

Joint ci ratio: 4.825091e-01	ci left: 2.968392e-05	ci right 4.902213e-05	k: 65	n:1690000
Cons ci ratio: 6.486763e-02	ci left: 2.086256e-03	ci right 2.226701e-03	k: 3643	n:1690000
KS ci ratio: 1.207637e-01	ci left: 5.854437e-04	ci right 6.612550e-04	k: 1052	n:1690000
MUC20   1690000 perm   1392 sec   (1214 perm/sec)   p_kst 6.224852e-04   p_cons 2.155621e-03   p_joint 3.846154e-05

Joint ci ratio: 4.825091e-01	ci left: 2.950931e-05	ci right 4.873377e-05	k: 65	n:1700000
Cons ci ratio: 6.472579e-02	ci left: 2.083243e-03	ci right 2.223167e-03	k: 3659	n:1700000
KS ci ratio: 1.204780e-01	ci left: 5.848524e-04	ci right 6.603951e-04	k: 1057	n:1700000
MUC20   1700000 perm   1406 sec   (1209 perm/sec)   p_kst 6.217647e-04   p_cons 2.152353e-03   p_joint 3.823529e-05

Joint ci ratio: 4.825092e-01	ci left: 2.933674e-05	ci right 4.844877e-05	k: 65	n:1710000
Cons ci ratio: 6.455849e-02	ci left: 2.081992e-03	ci right 2.221457e-03	k: 3678	n:1710000
KS ci ratio: 1.200251e-01	ci left: 5.859698e-04	ci right 6.613521e-04	k: 1065	n:1710000
MUC20   1710000 perm   1421 sec   (1203 perm/sec)   p_kst 6.228070e-04   p_cons 2.150877e-03   p_joint 3.801170e-05

Joint ci ratio: 4.825092e-01	ci left: 2.916618e-05	ci right 4.816710e-05	k: 65	n:1720000
Cons ci ratio: 6.438375e-02	ci left: 2.081328e-03	ci right 2.220357e-03	k: 3698	n:1720000
KS ci ratio: 1.196329e-01	ci left: 5.865108e-04	ci right 6.616988e-04	k: 1072	n:1720000
MUC20   1720000 perm   1436 sec   (1198 perm/sec)   p_kst 6.232558e-04   p_cons 2.150000e-03   p_joint 3.779070e-05

Joint ci ratio: 4.825093e-01	ci left: 2.899759e-05	ci right 4.788868e-05	k: 65	n:1730000
Cons ci ratio: 6.420178e-02	ci left: 2.081241e-03	ci right 2.219856e-03	k: 3719	n:1730000
KS ci ratio: 1.194661e-01	ci left: 5.848028e-04	ci right 6.596599e-04	k: 1075	n:1730000
MUC20   1730000 perm   1450 sec   (1193 perm/sec)   p_kst 6.213873e-04   p_cons 2.149711e-03   p_joint 3.757225e-05

Joint ci ratio: 4.788949e-01	ci left: 2.933598e-05	ci right 4.825733e-05	k: 66	n:1740000
Cons ci ratio: 6.402133e-02	ci left: 2.081155e-03	ci right 2.219361e-03	k: 3740	n:1740000
KS ci ratio: 1.190244e-01	ci left: 5.859024e-04	ci right 6.606035e-04	k: 1083	n:1740000
MUC20   1740000 perm   1465 sec   (1188 perm/sec)   p_kst 6.224138e-04   p_cons 2.149425e-03   p_joint 3.793103e-05

Joint ci ratio: 4.788949e-01	ci left: 2.916834e-05	ci right 4.798157e-05	k: 66	n:1750000
Cons ci ratio: 6.384241e-02	ci left: 2.081071e-03	ci right 2.218871e-03	k: 3761	n:1750000
KS ci ratio: 1.187509e-01	ci left: 5.853266e-04	ci right 6.597707e-04	k: 1088	n:1750000
MUC20   1750000 perm   1480 sec   (1183 perm/sec)   p_kst 6.217143e-04   p_cons 2.149143e-03   p_joint 3.771429e-05

Joint ci ratio: 4.753605e-01	ci left: 2.950244e-05	ci right 4.834500e-05	k: 67	n:1760000
Cons ci ratio: 6.368184e-02	ci left: 2.079870e-03	ci right 2.217231e-03	k: 3780	n:1760000
KS ci ratio: 1.185335e-01	ci left: 5.842061e-04	ci right 6.583622e-04	k: 1092	n:1760000
MUC20   1760000 perm   1495 sec   (1177 perm/sec)   p_kst 6.204545e-04   p_cons 2.147727e-03   p_joint 3.806818e-05

Joint ci ratio: 4.753606e-01	ci left: 2.933575e-05	ci right 4.807186e-05	k: 67	n:1770000
Cons ci ratio: 6.350574e-02	ci left: 2.079795e-03	ci right 2.216757e-03	k: 3801	n:1770000
KS ci ratio: 1.181020e-01	ci left: 5.852916e-04	ci right 6.592961e-04	k: 1100	n:1770000
MUC20   1770000 perm   1510 sec   (1172 perm/sec)   p_kst 6.214689e-04   p_cons 2.147458e-03   p_joint 3.785311e-05

Joint ci ratio: 4.753606e-01	ci left: 2.917095e-05	ci right 4.780180e-05	k: 67	n:1780000
Cons ci ratio: 6.335600e-02	ci left: 2.078063e-03	ci right 2.214576e-03	k: 3819	n:1780000
KS ci ratio: 1.178348e-01	ci left: 5.847295e-04	ci right 6.584840e-04	k: 1105	n:1780000
MUC20   1780000 perm   1525 sec   (1167 perm/sec)   p_kst 6.207865e-04   p_cons 2.145506e-03   p_joint 3.764045e-05

Joint ci ratio: 4.719033e-01	ci left: 2.949993e-05	ci right 4.815965e-05	k: 68	n:1790000
Cons ci ratio: 6.316610e-02	ci left: 2.079099e-03	ci right 2.215257e-03	k: 3842	n:1790000
KS ci ratio: 1.176754e-01	ci left: 5.830894e-04	ci right 6.565307e-04	k: 1108	n:1790000
MUC20   1790000 perm   1541 sec   (1162 perm/sec)   p_kst 6.189944e-04   p_cons 2.146369e-03   p_joint 3.798883e-05

Joint ci ratio: 4.719034e-01	ci left: 2.933604e-05	ci right 4.789209e-05	k: 68	n:1800000
Cons ci ratio: 6.302693e-02	ci left: 2.076844e-03	ci right 2.212543e-03	k: 3859	n:1800000
KS ci ratio: 1.172532e-01	ci left: 5.841639e-04	ci right 6.574582e-04	k: 1116	n:1800000
MUC20   1800000 perm   1556 sec   (1157 perm/sec)   p_kst 6.200000e-04   p_cons 2.143889e-03   p_joint 3.777778e-05

Joint ci ratio: 4.685204e-01	ci left: 2.966096e-05	ci right 4.824501e-05	k: 69	n:1810000
Cons ci ratio: 6.287242e-02	ci left: 2.075702e-03	ci right 2.210982e-03	k: 3878	n:1810000
KS ci ratio: 1.172009e-01	ci left: 5.814728e-04	ci right 6.543946e-04	k: 1117	n:1810000
MUC20   1810000 perm   1571 sec   (1152 perm/sec)   p_kst 6.171271e-04   p_cons 2.142541e-03   p_joint 3.812155e-05

Joint ci ratio: 4.685205e-01	ci left: 2.949798e-05	ci right 4.797993e-05	k: 69	n:1820000
Cons ci ratio: 6.263858e-02	ci left: 2.079981e-03	ci right 2.215017e-03	k: 3907	n:1820000
KS ci ratio: 1.169397e-01	ci left: 5.809446e-04	ci right 6.536267e-04	k: 1122	n:1820000
MUC20   1820000 perm   1587 sec   (1147 perm/sec)   p_kst 6.164835e-04   p_cons 2.146703e-03   p_joint 3.791209e-05

Joint ci ratio: 4.685205e-01	ci left: 2.933679e-05	ci right 4.771775e-05	k: 69	n:1830000
Cons ci ratio: 6.244708e-02	ci left: 2.081525e-03	ci right 2.216233e-03	k: 3931	n:1830000
KS ci ratio: 1.166286e-01	ci left: 5.809530e-04	ci right 6.534294e-04	k: 1128	n:1830000
MUC20   1830000 perm   1602 sec   (1142 perm/sec)   p_kst 6.163934e-04   p_cons 2.148087e-03   p_joint 3.770492e-05

Joint ci ratio: 4.685206e-01	ci left: 2.917735e-05	ci right 4.745841e-05	k: 69	n:1840000
Cons ci ratio: 6.222580e-02	ci left: 2.085193e-03	ci right 2.219643e-03	k: 3959	n:1840000
KS ci ratio: 1.164226e-01	ci left: 5.799062e-04	ci right 6.521154e-04	k: 1132	n:1840000
MUC20   1840000 perm   1617 sec   (1138 perm/sec)   p_kst 6.152174e-04   p_cons 2.151630e-03   p_joint 3.750000e-05

Joint ci ratio: 4.652094e-01	ci left: 2.949657e-05	ci right 4.780559e-05	k: 70	n:1850000
Cons ci ratio: 6.207710e-02	ci left: 2.084032e-03	ci right 2.218075e-03	k: 3978	n:1850000
KS ci ratio: 1.161666e-01	ci left: 5.793956e-04	ci right 6.513718e-04	k: 1137	n:1850000
MUC20   1850000 perm   1633 sec   (1133 perm/sec)   p_kst 6.145946e-04   p_cons 2.150270e-03   p_joint 3.783784e-05

Joint ci ratio: 4.652094e-01	ci left: 2.933798e-05	ci right 4.754858e-05	k: 70	n:1860000
Cons ci ratio: 6.189069e-02	ci left: 2.085531e-03	ci right 2.219253e-03	k: 4002	n:1860000
KS ci ratio: 1.159123e-01	ci left: 5.788907e-04	ci right 6.506359e-04	k: 1142	n:1860000
MUC20   1860000 perm   1649 sec   (1128 perm/sec)   p_kst 6.139785e-04   p_cons 2.151613e-03   p_joint 3.763441e-05

Joint ci ratio: 4.619674e-01	ci left: 2.965337e-05	ci right 4.789112e-05	k: 71	n:1870000
Cons ci ratio: 6.176746e-02	ci left: 2.082802e-03	ci right 2.216074e-03	k: 4018	n:1870000
KS ci ratio: 1.155087e-01	ci left: 5.799493e-04	ci right 6.515584e-04	k: 1150	n:1870000
MUC20   1870000 perm   1665 sec   (1123 perm/sec)   p_kst 6.149733e-04   p_cons 2.148663e-03   p_joint 3.796791e-05

Joint ci ratio: 4.556817e-01	ci left: 3.043647e-05	ci right 4.882238e-05	k: 73	n:1880000
Cons ci ratio: 6.150763e-02	ci left: 2.089530e-03	ci right 2.222650e-03	k: 4052	n:1880000
KS ci ratio: 1.152088e-01	ci left: 5.799639e-04	ci right 6.513762e-04	k: 1156	n:1880000
MUC20   1880000 perm   1680 sec   (1119 perm/sec)   p_kst 6.148936e-04   p_cons 2.155319e-03   p_joint 3.882979e-05

Joint ci ratio: 4.556817e-01	ci left: 3.027543e-05	ci right 4.856407e-05	k: 73	n:1890000
Cons ci ratio: 6.135646e-02	ci left: 2.088894e-03	ci right 2.221634e-03	k: 4072	n:1890000
KS ci ratio: 1.150102e-01	ci left: 5.789508e-04	ci right 6.501071e-04	k: 1160	n:1890000
MUC20   1890000 perm   1697 sec   (1114 perm/sec)   p_kst 6.137566e-04   p_cons 2.154497e-03   p_joint 3.862434e-05

Joint ci ratio: 4.556817e-01	ci left: 3.011609e-05	ci right 4.830847e-05	k: 73	n:1900000
Cons ci ratio: 6.119890e-02	ci left: 2.088783e-03	ci right 2.221163e-03	k: 4093	n:1900000
KS ci ratio: 1.148127e-01	ci left: 5.779484e-04	ci right 6.488513e-04	k: 1164	n:1900000
MUC20   1900000 perm   1713 sec   (1109 perm/sec)   p_kst 6.126316e-04   p_cons 2.154211e-03   p_joint 3.842105e-05

Joint ci ratio: 4.556818e-01	ci left: 2.995841e-05	ci right 4.805554e-05	k: 73	n:1910000
Cons ci ratio: 6.096095e-02	ci left: 2.094345e-03	ci right 2.226544e-03	k: 4125	n:1910000
KS ci ratio: 1.143717e-01	ci left: 5.794995e-04	ci right 6.503011e-04	k: 1173	n:1910000
MUC20   1910000 perm   1729 sec   (1105 perm/sec)   p_kst 6.141361e-04   p_cons 2.159686e-03   p_joint 3.821990e-05

Joint ci ratio: 4.556818e-01	ci left: 2.980238e-05	ci right 4.780526e-05	k: 73	n:1920000
Cons ci ratio: 6.075505e-02	ci left: 2.097798e-03	ci right 2.229752e-03	k: 4153	n:1920000
KS ci ratio: 1.140805e-01	ci left: 5.795170e-04	ci right 6.501284e-04	k: 1179	n:1920000
MUC20   1920000 perm   1745 sec   (1100 perm/sec)   p_kst 6.140625e-04   p_cons 2.163021e-03   p_joint 3.802083e-05

Joint ci ratio: 4.496459e-01	ci left: 3.056606e-05	ci right 4.871124e-05	k: 75	n:1930000
Cons ci ratio: 6.059480e-02	ci left: 2.098155e-03	ci right 2.229771e-03	k: 4175	n:1930000
KS ci ratio: 1.137436e-01	ci left: 5.800379e-04	ci right 6.504901e-04	k: 1186	n:1930000
MUC20   1930000 perm   1761 sec   (1096 perm/sec)   p_kst 6.145078e-04   p_cons 2.163212e-03   p_joint 3.886010e-05

Joint ci ratio: 2.201511e-01	ci left: 1.454216e-04	ci right 1.818712e-04	k: 316	n:1940000
Cons ci ratio: 6.045746e-02	ci left: 2.096985e-03	ci right 2.228219e-03	k: 4194	n:1940000
KS ci ratio: 1.132674e-01	ci left: 5.820564e-04	ci right 6.524379e-04	k: 1196	n:1940000
MUC20   1940000 perm   1778 sec   (1091 perm/sec)   p_kst 6.164948e-04   p_cons 2.161856e-03   p_joint 1.628866e-04

Joint ci ratio: 2.194599e-01	ci left: 1.456450e-04	ci right 1.820205e-04	k: 318	n:1950000
Cons ci ratio: 6.029955e-02	ci left: 2.097343e-03	ci right 2.228245e-03	k: 4216	n:1950000
KS ci ratio: 1.130787e-01	ci left: 5.810647e-04	ci right 6.512014e-04	k: 1200	n:1950000
MUC20   1950000 perm   1794 sec   (1087 perm/sec)   p_kst 6.153846e-04   p_cons 2.162051e-03   p_joint 1.630769e-04

Joint ci ratio: 2.187751e-01	ci left: 1.458664e-04	ci right 1.821682e-04	k: 320	n:1960000
Cons ci ratio: 6.013576e-02	ci left: 2.098201e-03	ci right 2.228788e-03	k: 4239	n:1960000
KS ci ratio: 1.127973e-01	ci left: 5.810748e-04	ci right 6.510266e-04	k: 1206	n:1960000
MUC20   1960000 perm   1811 sec   (1082 perm/sec)   p_kst 6.153061e-04   p_cons 2.162755e-03   p_joint 1.632653e-04

Joint ci ratio: 2.184351e-01	ci left: 1.456057e-04	ci right 1.817788e-04	k: 321	n:1970000
Cons ci ratio: 5.998034e-02	ci left: 2.098550e-03	ci right 2.228809e-03	k: 4261	n:1970000
KS ci ratio: 1.124252e-01	ci left: 5.820717e-04	ci right 6.518972e-04	k: 1214	n:1970000
MUC20   1970000 perm   1828 sec   (1078 perm/sec)   p_kst 6.162437e-04   p_cons 2.162944e-03   p_joint 1.629442e-04

Joint ci ratio: 2.184352e-01	ci left: 1.448703e-04	ci right 1.808608e-04	k: 321	n:1980000
Cons ci ratio: 5.981913e-02	ci left: 2.099393e-03	ci right 2.229343e-03	k: 4284	n:1980000
KS ci ratio: 1.122407e-01	ci left: 5.810954e-04	ci right 6.506817e-04	k: 1218	n:1980000
MUC20   1980000 perm   1844 sec   (1074 perm/sec)   p_kst 6.151515e-04   p_cons 2.163636e-03   p_joint 1.621212e-04

Joint ci ratio: 2.180969e-01	ci left: 1.446174e-04	ci right 1.804819e-04	k: 322	n:1990000
Cons ci ratio: 5.966615e-02	ci left: 2.099734e-03	ci right 2.229360e-03	k: 4306	n:1990000
KS ci ratio: 1.120571e-01	ci left: 5.801290e-04	ci right 6.494784e-04	k: 1222	n:1990000
MUC20   1990000 perm   1861 sec   (1069 perm/sec)   p_kst 6.140704e-04   p_cons 2.163819e-03   p_joint 1.618090e-04

Joint ci ratio: 2.177601e-01	ci left: 1.443670e-04	ci right 1.801067e-04	k: 323	n:2000000
Cons ci ratio: 5.952813e-02	ci left: 2.099086e-03	ci right 2.228362e-03	k: 4326	n:2000000
KS ci ratio: 1.118743e-01	ci left: 5.791723e-04	ci right 6.482870e-04	k: 1226	n:2000000
MUC20   2000000 perm   1878 sec   (1065 perm/sec)   p_kst 6.130000e-04   p_cons 2.163000e-03   p_joint 1.615000e-04

Joint ci ratio: 2.177602e-01	ci left: 1.436488e-04	ci right 1.792107e-04	k: 323	n:2010000
Cons ci ratio: 5.941845e-02	ci left: 2.096484e-03	ci right 2.225355e-03	k: 4342	n:2010000
KS ci ratio: 1.116018e-01	ci left: 5.791925e-04	ci right 6.481302e-04	k: 1232	n:2010000
MUC20   2010000 perm   1895 sec   (1061 perm/sec)   p_kst 6.129353e-04   p_cons 2.160199e-03   p_joint 1.606965e-04

Joint ci ratio: 2.167589e-01	ci left: 1.443420e-04	ci right 1.798893e-04	k: 326	n:2020000
Cons ci ratio: 5.926172e-02	ci left: 2.097323e-03	ci right 2.225893e-03	k: 4365	n:2020000
KS ci ratio: 1.113312e-01	ci left: 5.792127e-04	ci right 6.479747e-04	k: 1238	n:2020000
MUC20   2020000 perm   1911 sec   (1057 perm/sec)   p_kst 6.128713e-04   p_cons 2.160891e-03   p_joint 1.613861e-04

Joint ci ratio: 2.167590e-01	ci left: 1.436309e-04	ci right 1.790032e-04	k: 326	n:2030000
Cons ci ratio: 5.911297e-02	ci left: 2.097668e-03	ci right 2.225926e-03	k: 4387	n:2030000
KS ci ratio: 1.110181e-01	ci left: 5.797118e-04	ci right 6.483268e-04	k: 1245	n:2030000
MUC20   2030000 perm   1928 sec   (1053 perm/sec)   p_kst 6.133005e-04   p_cons 2.161084e-03   p_joint 1.605911e-04

Joint ci ratio: 2.164283e-01	ci left: 1.433905e-04	ci right 1.786424e-04	k: 327	n:2040000
Cons ci ratio: 5.897873e-02	ci left: 2.097045e-03	ci right 2.224963e-03	k: 4407	n:2040000
KS ci ratio: 1.107960e-01	ci left: 5.792531e-04	ci right 6.476677e-04	k: 1250	n:2040000
MUC20   2040000 perm   1945 sec   (1049 perm/sec)   p_kst 6.127451e-04   p_cons 2.160294e-03   p_joint 1.602941e-04

Joint ci ratio: 2.157715e-01	ci left: 1.436138e-04	ci right 1.787993e-04	k: 329	n:2050000
Cons ci ratio: 5.881215e-02	ci left: 2.098831e-03	ci right 2.226484e-03	k: 4432	n:2050000
KS ci ratio: 1.106194e-01	ci left: 5.783246e-04	ci right 6.465136e-04	k: 1254	n:2050000
MUC20   2050000 perm   1963 sec   (1044 perm/sec)   p_kst 6.117073e-04   p_cons 2.161951e-03   p_joint 1.604878e-04

Joint ci ratio: 4.355469e-01	ci left: 3.079382e-05	ci right 4.833323e-05	k: 80	n:2060000
Cons ci ratio: 5.872622e-02	ci left: 2.094860e-03	ci right 2.222080e-03	k: 4445	n:2060000
KS ci ratio: 1.102684e-01	ci left: 5.792935e-04	ci right 6.473659e-04	k: 1262	n:2060000
MUC20   2060000 perm   1980 sec   (1040 perm/sec)   p_kst 6.126214e-04   p_cons 2.157767e-03   p_joint 3.883495e-05

Joint ci ratio: 4.302672e-01	ci left: 3.150593e-05	ci right 4.917060e-05	k: 82	n:2070000
Cons ci ratio: 5.853552e-02	ci left: 2.098545e-03	ci right 2.225560e-03	k: 4474	n:2070000
KS ci ratio: 1.100943e-01	ci left: 5.783740e-04	ci right 6.462241e-04	k: 1266	n:2070000
MUC20   2070000 perm   1998 sec   (1036 perm/sec)   p_kst 6.115942e-04   p_cons 2.161353e-03   p_joint 3.961353e-05

Joint ci ratio: 4.276983e-01	ci left: 3.178331e-05	ci right 4.946658e-05	k: 83	n:2080000
Cons ci ratio: 5.836615e-02	ci left: 2.100773e-03	ci right 2.227543e-03	k: 4500	n:2080000
KS ci ratio: 1.098777e-01	ci left: 5.779311e-04	ci right 6.455872e-04	k: 1271	n:2080000
MUC20   2080000 perm   2015 sec   (1032 perm/sec)   p_kst 6.110577e-04   p_cons 2.163462e-03   p_joint 3.990385e-05

Joint ci ratio: 4.276984e-01	ci left: 3.163124e-05	ci right 4.922990e-05	k: 83	n:2090000
Cons ci ratio: 5.823693e-02	ci left: 2.100151e-03	ci right 2.226594e-03	k: 4520	n:2090000
KS ci ratio: 1.097054e-01	ci left: 5.770272e-04	ci right 6.444647e-04	k: 1275	n:2090000
MUC20   2090000 perm   2032 sec   (1028 perm/sec)   p_kst 6.100478e-04   p_cons 2.162679e-03   p_joint 3.971292e-05

Joint ci ratio: 4.276984e-01	ci left: 3.148061e-05	ci right 4.899548e-05	k: 83	n:2100000
Cons ci ratio: 5.805734e-02	ci left: 2.103290e-03	ci right 2.229518e-03	k: 4548	n:2100000
KS ci ratio: 1.094484e-01	ci left: 5.770583e-04	ci right 6.443312e-04	k: 1281	n:2100000
MUC20   2100000 perm   2050 sec   (1024 perm/sec)   p_kst 6.100000e-04   p_cons 2.165714e-03   p_joint 3.952381e-05

Joint ci ratio: 4.276984e-01	ci left: 3.133141e-05	ci right 4.876327e-05	k: 83	n:2110000
Cons ci ratio: 5.793651e-02	ci left: 2.102196e-03	ci right 2.228087e-03	k: 4567	n:2110000
KS ci ratio: 1.093632e-01	ci left: 5.752453e-04	ci right 6.422514e-04	k: 1283	n:2110000
MUC20   2110000 perm   2068 sec   (1021 perm/sec)   p_kst 6.080569e-04   p_cons 2.164455e-03   p_joint 3.933649e-05

Joint ci ratio: 4.251751e-01	ci left: 3.160469e-05	ci right 4.905529e-05	k: 84	n:2120000
Cons ci ratio: 5.779749e-02	ci left: 2.102507e-03	ci right 2.228104e-03	k: 4589	n:2120000
KS ci ratio: 1.090241e-01	ci left: 5.762024e-04	ci right 6.430985e-04	k: 1291	n:2120000
MUC20   2120000 perm   2085 sec   (1017 perm/sec)   p_kst 6.089623e-04   p_cons 2.164623e-03   p_joint 3.962264e-05

Joint ci ratio: 4.226958e-01	ci left: 3.187570e-05	ci right 4.934428e-05	k: 85	n:2130000
Cons ci ratio: 5.765320e-02	ci left: 2.103278e-03	ci right 2.228598e-03	k: 4612	n:2130000
KS ci ratio: 1.088137e-01	ci left: 5.757807e-04	ci right 6.424906e-04	k: 1296	n:2130000
MUC20   2130000 perm   2103 sec   (1013 perm/sec)   p_kst 6.084507e-04   p_cons 2.165258e-03   p_joint 3.990610e-05

Joint ci ratio: 4.226959e-01	ci left: 3.172675e-05	ci right 4.911370e-05	k: 85	n:2140000
Cons ci ratio: 5.751621e-02	ci left: 2.103582e-03	ci right 2.228612e-03	k: 4634	n:2140000
KS ci ratio: 1.085629e-01	ci left: 5.758177e-04	ci right 6.423682e-04	k: 1302	n:2140000
MUC20   2140000 perm   2121 sec   (1009 perm/sec)   p_kst 6.084112e-04   p_cons 2.165421e-03   p_joint 3.971963e-05

Joint ci ratio: 4.226959e-01	ci left: 3.157918e-05	ci right 4.888527e-05	k: 85	n:2150000
Cons ci ratio: 5.738019e-02	ci left: 2.103884e-03	ci right 2.228626e-03	k: 4656	n:2150000
KS ci ratio: 1.082311e-01	ci left: 5.767595e-04	ci right 6.432022e-04	k: 1310	n:2150000
MUC20   2150000 perm   2139 sec   (1005 perm/sec)   p_kst 6.093023e-04   p_cons 2.165581e-03   p_joint 3.953488e-05

Joint ci ratio: 4.226960e-01	ci left: 3.143298e-05	ci right 4.865895e-05	k: 85	n:2160000
Cons ci ratio: 5.725740e-02	ci left: 2.103270e-03	ci right 2.227700e-03	k: 4676	n:2160000
KS ci ratio: 1.081076e-01	ci left: 5.754406e-04	ci right 6.416509e-04	k: 1313	n:2160000
MUC20   2160000 perm   2158 sec   (1001 perm/sec)   p_kst 6.078704e-04   p_cons 2.164815e-03   p_joint 3.935185e-05

Joint ci ratio: 4.178648e-01	ci left: 3.211230e-05	ci right 4.945331e-05	k: 87	n:2170000
Cons ci ratio: 5.706845e-02	ci left: 2.107659e-03	ci right 2.231924e-03	k: 4707	n:2170000
KS ci ratio: 1.077799e-01	ci left: 5.763759e-04	ci right 6.424801e-04	k: 1321	n:2170000
MUC20   2170000 perm   2176 sec   (997 perm/sec)   p_kst 6.087558e-04   p_cons 2.169124e-03   p_joint 4.009217e-05

Joint ci ratio: 4.155106e-01	ci left: 3.237561e-05	ci right 4.973301e-05	k: 88	n:2180000
Cons ci ratio: 5.692955e-02	ci left: 2.108391e-03	ci right 2.232387e-03	k: 4730	n:2180000
KS ci ratio: 1.076173e-01	ci left: 5.755174e-04	ci right 6.414172e-04	k: 1325	n:2180000
MUC20   2180000 perm   2194 sec   (994 perm/sec)   p_kst 6.077982e-04   p_cons 2.169725e-03   p_joint 4.036697e-05

Joint ci ratio: 4.155106e-01	ci left: 3.222778e-05	ci right 4.950592e-05	k: 88	n:2190000
Cons ci ratio: 5.674382e-02	ci left: 2.112718e-03	ci right 2.236549e-03	k: 4761	n:2190000
KS ci ratio: 1.073746e-01	ci left: 5.755556e-04	ci right 6.413017e-04	k: 1331	n:2190000
MUC20   2190000 perm   2212 sec   (990 perm/sec)   p_kst 6.077626e-04   p_cons 2.173973e-03   p_joint 4.018265e-05

Joint ci ratio: 4.155107e-01	ci left: 3.208129e-05	ci right 4.928089e-05	k: 88	n:2200000
Cons ci ratio: 5.662506e-02	ci left: 2.112077e-03	ci right 2.235603e-03	k: 4781	n:2200000
KS ci ratio: 1.070936e-01	ci left: 5.760359e-04	ci right 6.416538e-04	k: 1338	n:2200000
MUC20   2200000 perm   2231 sec   (986 perm/sec)   p_kst 6.081818e-04   p_cons 2.173182e-03   p_joint 4.000000e-05

Joint ci ratio: 4.155107e-01	ci left: 3.193612e-05	ci right 4.905790e-05	k: 88	n:2210000
Cons ci ratio: 5.650704e-02	ci left: 2.111442e-03	ci right 2.234665e-03	k: 4801	n:2210000
KS ci ratio: 1.067750e-01	ci left: 5.769525e-04	ci right 6.424671e-04	k: 1346	n:2210000
MUC20   2210000 perm   2250 sec   (982 perm/sec)   p_kst 6.090498e-04   p_cons 2.172398e-03   p_joint 3.981900e-05

Joint ci ratio: 4.155107e-01	ci left: 3.179227e-05	ci right 4.883692e-05	k: 88	n:2220000
Cons ci ratio: 5.637804e-02	ci left: 2.111701e-03	ci right 2.234648e-03	k: 4823	n:2220000
KS ci ratio: 1.066169e-01	ci left: 5.761073e-04	ci right 6.414230e-04	k: 1350	n:2220000
MUC20   2220000 perm   2268 sec   (979 perm/sec)   p_kst 6.081081e-04   p_cons 2.172523e-03   p_joint 3.963964e-05

Joint ci ratio: 4.131959e-01	ci left: 3.205138e-05	ci right 4.911285e-05	k: 89	n:2230000
Cons ci ratio: 5.623247e-02	ci left: 2.113284e-03	ci right 2.235996e-03	k: 4848	n:2230000
KS ci ratio: 1.065382e-01	ci left: 5.743968e-04	ci right 6.394674e-04	k: 1352	n:2230000
MUC20   2230000 perm   2287 sec   (975 perm/sec)   p_kst 6.062780e-04   p_cons 2.173991e-03   p_joint 3.991031e-05

Joint ci ratio: 4.131959e-01	ci left: 3.190829e-05	ci right 4.889360e-05	k: 89	n:2240000
Cons ci ratio: 5.608803e-02	ci left: 2.114854e-03	ci right 2.237331e-03	k: 4873	n:2240000
KS ci ratio: 1.063027e-01	ci left: 5.744398e-04	ci right 6.393625e-04	k: 1358	n:2240000
MUC20   2240000 perm   2306 sec   (971 perm/sec)   p_kst 6.062500e-04   p_cons 2.175446e-03   p_joint 3.973214e-05

Joint ci ratio: 4.131959e-01	ci left: 3.176648e-05	ci right 4.867629e-05	k: 89	n:2250000
Cons ci ratio: 5.596760e-02	ci left: 2.114657e-03	ci right 2.236852e-03	k: 4894	n:2250000
KS ci ratio: 1.059137e-01	ci left: 5.762133e-04	ci right 6.410832e-04	k: 1368	n:2250000
MUC20   2250000 perm   2325 sec   (968 perm/sec)   p_kst 6.080000e-04   p_cons 2.175111e-03   p_joint 3.955556e-05

Joint ci ratio: 4.131960e-01	ci left: 3.162592e-05	ci right 4.846091e-05	k: 89	n:2260000
Cons ci ratio: 5.585364e-02	ci left: 2.114026e-03	ci right 2.235927e-03	k: 4914	n:2260000
KS ci ratio: 1.057593e-01	ci left: 5.753867e-04	ci right 6.400633e-04	k: 1372	n:2260000
MUC20   2260000 perm   2344 sec   (964 perm/sec)   p_kst 6.070796e-04   p_cons 2.174336e-03   p_joint 3.938053e-05

Joint ci ratio: 4.131960e-01	ci left: 3.148659e-05	ci right 4.824743e-05	k: 89	n:2270000
Cons ci ratio: 5.574036e-02	ci left: 2.113401e-03	ci right 2.235011e-03	k: 4934	n:2270000
KS ci ratio: 1.054525e-01	ci left: 5.762831e-04	ci right 6.408609e-04	k: 1380	n:2270000
MUC20   2270000 perm   2363 sec   (961 perm/sec)   p_kst 6.079295e-04   p_cons 2.173568e-03   p_joint 3.920705e-05

Joint ci ratio: 2.048852e-01	ci left: 1.440849e-04	ci right 1.773819e-04	k: 365	n:2280000
Cons ci ratio: 5.559406e-02	ci left: 2.115377e-03	ci right 2.236771e-03	k: 4960	n:2280000
KS ci ratio: 1.053002e-01	ci left: 5.754637e-04	ci right 6.398508e-04	k: 1384	n:2280000
MUC20   2280000 perm   2382 sec   (957 perm/sec)   p_kst 6.070175e-04   p_cons 2.175439e-03   p_joint 1.600877e-04

Joint ci ratio: 2.043277e-01	ci left: 1.442843e-04	ci right 1.775254e-04	k: 367	n:2290000
Cons ci ratio: 5.547119e-02	ci left: 2.115613e-03	ci right 2.236743e-03	k: 4982	n:2290000
KS ci ratio: 1.049973e-01	ci left: 5.763524e-04	ci right 6.406419e-04	k: 1392	n:2290000
MUC20   2290000 perm   2407 sec   (951 perm/sec)   p_kst 6.078603e-04   p_cons 2.175546e-03   p_joint 1.602620e-04

Joint ci ratio: 2.032261e-01	ci left: 1.453074e-04	ci right 1.785813e-04	k: 371	n:2300000
Cons ci ratio: 5.532145e-02	ci left: 2.117991e-03	ci right 2.238920e-03	k: 5009	n:2300000
KS ci ratio: 1.047719e-01	ci left: 5.763868e-04	ci right 6.405336e-04	k: 1398	n:2300000
MUC20   2300000 perm   2427 sec   (948 perm/sec)   p_kst 6.078261e-04   p_cons 2.177826e-03   p_joint 1.613043e-04

Joint ci ratio: 2.026819e-01	ci left: 1.455001e-04	ci right 1.787179e-04	k: 373	n:2310000
Cons ci ratio: 5.523340e-02	ci left: 2.115653e-03	ci right 2.236250e-03	k: 5025	n:2310000
KS ci ratio: 1.043994e-01	ci left: 5.781074e-04	ci right 6.422029e-04	k: 1408	n:2310000
MUC20   2310000 perm   2447 sec   (944 perm/sec)   p_kst 6.095238e-04   p_cons 2.175325e-03   p_joint 1.614719e-04

Joint ci ratio: 2.026820e-01	ci left: 1.448730e-04	ci right 1.779476e-04	k: 373	n:2320000
Cons ci ratio: 5.510744e-02	ci left: 2.116311e-03	ci right 2.236661e-03	k: 5048	n:2320000
KS ci ratio: 1.041778e-01	ci left: 5.781343e-04	ci right 6.420884e-04	k: 1414	n:2320000
MUC20   2320000 perm   2466 sec   (941 perm/sec)   p_kst 6.094828e-04   p_cons 2.175862e-03   p_joint 1.607759e-04

Joint ci ratio: 2.021422e-01	ci left: 1.450661e-04	ci right 1.780857e-04	k: 375	n:2330000
Cons ci ratio: 5.500407e-02	ci left: 2.115270e-03	ci right 2.235329e-03	k: 5067	n:2330000
KS ci ratio: 1.040676e-01	ci left: 5.769070e-04	ci right 6.406538e-04	k: 1417	n:2330000
MUC20   2330000 perm   2485 sec   (938 perm/sec)   p_kst 6.081545e-04   p_cons 2.174678e-03   p_joint 1.609442e-04

Joint ci ratio: 2.016067e-01	ci left: 1.452576e-04	ci right 1.782225e-04	k: 377	n:2340000
Cons ci ratio: 5.489588e-02	ci left: 2.114660e-03	ci right 2.234441e-03	k: 5087	n:2340000
KS ci ratio: 1.038117e-01	ci left: 5.773553e-04	ci right 6.409851e-04	k: 1424	n:2340000
MUC20   2340000 perm   2505 sec   (934 perm/sec)   p_kst 6.085470e-04   p_cons 2.173932e-03   p_joint 1.611111e-04

Joint ci ratio: 2.013406e-01	ci left: 1.450436e-04	ci right 1.779111e-04	k: 378	n:2350000
Cons ci ratio: 5.477221e-02	ci left: 2.115315e-03	ci right 2.234854e-03	k: 5110	n:2350000
KS ci ratio: 1.035576e-01	ci left: 5.778000e-04	ci right 6.413135e-04	k: 1431	n:2350000
MUC20   2350000 perm   2524 sec   (931 perm/sec)   p_kst 6.089362e-04   p_cons 2.174468e-03   p_joint 1.608511e-04

Joint ci ratio: 2.008114e-01	ci left: 1.452338e-04	ci right 1.780473e-04	k: 380	n:2360000
Cons ci ratio: 5.464937e-02	ci left: 2.115964e-03	ci right 2.235263e-03	k: 5133	n:2360000
KS ci ratio: 1.033414e-01	ci left: 5.778282e-04	ci right 6.412042e-04	k: 1437	n:2360000
MUC20   2360000 perm   2544 sec   (928 perm/sec)   p_kst 6.088983e-04   p_cons 2.175000e-03   p_joint 1.610169e-04

Joint ci ratio: 1.997654e-01	ci left: 1.462241e-04	ci right 1.790683e-04	k: 384	n:2370000
Cons ci ratio: 5.453795e-02	ci left: 2.115775e-03	ci right 2.234813e-03	k: 5154	n:2370000
KS ci ratio: 1.030907e-01	ci left: 5.782675e-04	ci right 6.415285e-04	k: 1444	n:2370000
MUC20   2370000 perm   2564 sec   (924 perm/sec)   p_kst 6.092827e-04   p_cons 2.174684e-03   p_joint 1.620253e-04

Joint ci ratio: 1.995065e-01	ci left: 1.460089e-04	ci right 1.787571e-04	k: 385	n:2380000
Cons ci ratio: 5.442194e-02	ci left: 2.116003e-03	ci right 2.234793e-03	k: 5176	n:2380000
KS ci ratio: 1.030552e-01	ci left: 5.762471e-04	ci right 6.392640e-04	k: 1445	n:2380000
MUC20   2380000 perm   2584 sec   (921 perm/sec)   p_kst 6.071429e-04   p_cons 2.174790e-03   p_joint 1.617647e-04

Joint ci ratio: 1.989917e-01	ci left: 1.461930e-04	ci right 1.788876e-04	k: 387	n:2390000
Cons ci ratio: 5.432238e-02	ci left: 2.114992e-03	ci right 2.233500e-03	k: 5195	n:2390000
KS ci ratio: 1.027006e-01	ci left: 5.779125e-04	ci right 6.408809e-04	k: 1455	n:2390000
MUC20   2390000 perm   2604 sec   (918 perm/sec)   p_kst 6.087866e-04   p_cons 2.173640e-03   p_joint 1.619247e-04

Joint ci ratio: 1.989917e-01	ci left: 1.455839e-04	ci right 1.781423e-04	k: 387	n:2400000
Cons ci ratio: 5.423379e-02	ci left: 2.113166e-03	ci right 2.231373e-03	k: 5212	n:2400000
KS ci ratio: 1.025599e-01	ci left: 5.771284e-04	ci right 6.399201e-04	k: 1459	n:2400000
MUC20   2400000 perm   2624 sec   (915 perm/sec)   p_kst 6.079167e-04   p_cons 2.171667e-03   p_joint 1.612500e-04

Joint ci ratio: 1.982268e-01	ci left: 1.461627e-04	ci right 1.787097e-04	k: 390	n:2410000
Cons ci ratio: 5.409382e-02	ci left: 2.115450e-03	ci right 2.233470e-03	k: 5239	n:2410000
KS ci ratio: 1.023498e-01	ci left: 5.771595e-04	ci right 6.398182e-04	k: 1465	n:2410000
MUC20   2410000 perm   2644 sec   (911 perm/sec)   p_kst 6.078838e-04   p_cons 2.173859e-03   p_joint 1.618257e-04

Joint ci ratio: 1.979738e-01	ci left: 1.459515e-04	ci right 1.784049e-04	k: 391	n:2420000
Cons ci ratio: 5.402179e-02	ci left: 2.112415e-03	ci right 2.230104e-03	k: 5253	n:2420000
KS ci ratio: 1.022801e-01	ci left: 5.755798e-04	ci right 6.380219e-04	k: 1467	n:2420000
MUC20   2420000 perm   2664 sec   (908 perm/sec)   p_kst 6.061983e-04   p_cons 2.170661e-03   p_joint 1.615702e-04

Joint ci ratio: 1.979739e-01	ci left: 1.453509e-04	ci right 1.776708e-04	k: 391	n:2430000
Cons ci ratio: 5.391928e-02	ci left: 2.111841e-03	ci right 2.229268e-03	k: 5273	n:2430000
KS ci ratio: 1.021758e-01	ci left: 5.744142e-04	ci right 6.366625e-04	k: 1470	n:2430000
MUC20   2430000 perm   2684 sec   (905 perm/sec)   p_kst 6.049383e-04   p_cons 2.169959e-03   p_joint 1.609053e-04

Joint ci ratio: 1.972206e-01	ci left: 1.459238e-04	ci right 1.782329e-04	k: 394	n:2440000
Cons ci ratio: 5.380717e-02	ci left: 2.112081e-03	ci right 2.229269e-03	k: 5295	n:2440000
KS ci ratio: 1.020026e-01	ci left: 5.740569e-04	ci right 6.361547e-04	k: 1475	n:2440000
MUC20   2440000 perm   2705 sec   (902 perm/sec)   p_kst 6.045082e-04   p_cons 2.170082e-03   p_joint 1.614754e-04

Joint ci ratio: 1.969715e-01	ci left: 1.457162e-04	ci right 1.779337e-04	k: 395	n:2450000
Cons ci ratio: 5.370082e-02	ci left: 2.111917e-03	ci right 2.228857e-03	k: 5316	n:2450000
KS ci ratio: 1.018647e-01	ci left: 5.733048e-04	ci right 6.352324e-04	k: 1479	n:2450000
MUC20   2450000 perm   2725 sec   (899 perm/sec)   p_kst 6.036735e-04   p_cons 2.169796e-03   p_joint 1.612245e-04

Joint ci ratio: 1.959840e-01	ci left: 1.466699e-04	ci right 1.789163e-04	k: 399	n:2460000
Cons ci ratio: 5.354987e-02	ci left: 2.115363e-03	ci right 2.232155e-03	k: 5346	n:2460000
KS ci ratio: 1.017617e-01	ci left: 5.721627e-04	ci right 6.339007e-04	k: 1482	n:2460000
MUC20   2460000 perm   2745 sec   (896 perm/sec)   p_kst 6.024390e-04   p_cons 2.173171e-03   p_joint 1.621951e-04

Joint ci ratio: 1.952531e-01	ci left: 1.472312e-04	ci right 1.794659e-04	k: 402	n:2470000
Cons ci ratio: 5.345002e-02	ci left: 2.114788e-03	ci right 2.231323e-03	k: 5366	n:2470000
KS ci ratio: 1.013863e-01	ci left: 5.741866e-04	ci right 6.359008e-04	k: 1493	n:2470000
MUC20   2470000 perm   2765 sec   (893 perm/sec)   p_kst 6.044534e-04   p_cons 2.172470e-03   p_joint 1.627530e-04

Joint ci ratio: 1.950114e-01	ci left: 1.470211e-04	ci right 1.791651e-04	k: 403	n:2480000
Cons ci ratio: 5.335072e-02	ci left: 2.114217e-03	ci right 2.230498e-03	k: 5386	n:2480000
KS ci ratio: 1.012509e-01	ci left: 5.734434e-04	ci right 6.349905e-04	k: 1497	n:2480000
MUC20   2480000 perm   2786 sec   (890 perm/sec)   p_kst 6.036290e-04   p_cons 2.171774e-03   p_joint 1.625000e-04

Joint ci ratio: 1.942913e-01	ci left: 1.475767e-04	ci right 1.797090e-04	k: 406	n:2490000
Cons ci ratio: 5.322239e-02	ci left: 2.116029e-03	ci right 2.232121e-03	k: 5412	n:2490000
KS ci ratio: 1.011835e-01	ci left: 5.719233e-04	ci right 6.332639e-04	k: 1499	n:2490000
MUC20   2490000 perm   2806 sec   (887 perm/sec)   p_kst 6.020080e-04   p_cons 2.173494e-03   p_joint 1.630522e-04

Joint ci ratio: 1.940530e-01	ci left: 1.473670e-04	ci right 1.794096e-04	k: 407	n:2500000
Cons ci ratio: 5.310477e-02	ci left: 2.117038e-03	ci right 2.232920e-03	k: 5436	n:2500000
KS ci ratio: 1.009482e-01	ci left: 5.723648e-04	ci right 6.336016e-04	k: 1506	n:2500000
MUC20   2500000 perm   2827 sec   (884 perm/sec)   p_kst 6.024000e-04   p_cons 2.174400e-03   p_joint 1.628000e-04

Joint ci ratio: 1.940531e-01	ci left: 1.467799e-04	ci right 1.786949e-04	k: 407	n:2510000
Cons ci ratio: 5.298793e-02	ci left: 2.118038e-03	ci right 2.233713e-03	k: 5460	n:2510000
KS ci ratio: 1.005816e-01	ci left: 5.743565e-04	ci right 6.355701e-04	k: 1517	n:2510000
MUC20   2510000 perm   2848 sec   (881 perm/sec)   p_kst 6.043825e-04   p_cons 2.175299e-03   p_joint 1.621514e-04

Joint ci ratio: 1.933435e-01	ci left: 1.473302e-04	ci right 1.792339e-04	k: 410	n:2520000
Cons ci ratio: 5.291538e-02	ci left: 2.115507e-03	ci right 2.230880e-03	k: 5475	n:2520000
KS ci ratio: 1.002191e-01	ci left: 5.763328e-04	ci right 6.375226e-04	k: 1528	n:2520000
MUC20   2520000 perm   2869 sec   (878 perm/sec)   p_kst 6.063492e-04   p_cons 2.172619e-03   p_joint 1.626984e-04

Joint ci ratio: 1.931088e-01	ci left: 1.471240e-04	ci right 1.789398e-04	k: 411	n:2530000
Cons ci ratio: 5.277093e-02	ci left: 2.118846e-03	ci right 2.234077e-03	k: 5505	n:2530000
KS ci ratio: 9.982800e-02	ci left: 5.786793e-04	ci right 6.398644e-04	k: 1540	n:2530000
MUC20   2530000 perm   2890 sec   (875 perm/sec)   p_kst 6.086957e-04   p_cons 2.175889e-03   p_joint 1.624506e-04

Joint ci ratio: 1.924095e-01	ci left: 1.476688e-04	ci right 1.794733e-04	k: 414	n:2540000
Cons ci ratio: 5.263720e-02	ci left: 2.121383e-03	ci right 2.236450e-03	k: 5533	n:2540000
KS ci ratio: 9.960201e-02	ci left: 5.790882e-04	ci right 6.401699e-04	k: 1547	n:2540000
MUC20   2540000 perm   2911 sec   (873 perm/sec)   p_kst 6.090551e-04   p_cons 2.178346e-03   p_joint 1.629921e-04

Joint ci ratio: 1.924095e-01	ci left: 1.470897e-04	ci right 1.787695e-04	k: 414	n:2550000
Cons ci ratio: 5.253762e-02	ci left: 2.121190e-03	ci right 2.236023e-03	k: 5554	n:2550000
KS ci ratio: 9.931367e-02	ci left: 5.802589e-04	ci right 6.412766e-04	k: 1556	n:2550000
MUC20   2550000 perm   2932 sec   (870 perm/sec)   p_kst 6.101961e-04   p_cons 2.178039e-03   p_joint 1.623529e-04

Joint ci ratio: 1.919476e-01	ci left: 1.472588e-04	ci right 1.788900e-04	k: 416	n:2560000
Cons ci ratio: 5.243389e-02	ci left: 2.121386e-03	ci right 2.235995e-03	k: 5576	n:2560000
KS ci ratio: 9.902782e-02	ci left: 5.814207e-04	ci right 6.423743e-04	k: 1565	n:2560000
MUC20   2560000 perm   2953 sec   (867 perm/sec)   p_kst 6.113281e-04   p_cons 2.178125e-03   p_joint 1.625000e-04

Joint ci ratio: 1.917178e-01	ci left: 1.470563e-04	ci right 1.786017e-04	k: 417	n:2570000
Cons ci ratio: 5.233546e-02	ci left: 2.121195e-03	ci right 2.235573e-03	k: 5597	n:2570000
KS ci ratio: 9.880722e-02	ci left: 5.818148e-04	ci right 6.426659e-04	k: 1572	n:2570000
MUC20   2570000 perm   2975 sec   (864 perm/sec)   p_kst 6.116732e-04   p_cons 2.177821e-03   p_joint 1.622568e-04

Joint ci ratio: 1.914889e-01	ci left: 1.468553e-04	ci right 1.783156e-04	k: 418	n:2580000
Cons ci ratio: 5.222826e-02	ci left: 2.121772e-03	ci right 2.235939e-03	k: 5620	n:2580000
KS ci ratio: 9.868187e-02	ci left: 5.810718e-04	ci right 6.417636e-04	k: 1576	n:2580000
MUC20   2580000 perm   2996 sec   (861 perm/sec)   p_kst 6.108527e-04   p_cons 2.178295e-03   p_joint 1.620155e-04

Joint ci ratio: 1.912609e-01	ci left: 1.466559e-04	ci right 1.780317e-04	k: 419	n:2590000
Cons ci ratio: 5.213098e-02	ci left: 2.121582e-03	ci right 2.235520e-03	k: 5641	n:2590000
KS ci ratio: 9.849468e-02	ci left: 5.810877e-04	ci right 6.416595e-04	k: 1582	n:2590000
MUC20   2590000 perm   3018 sec   (858 perm/sec)   p_kst 6.108108e-04   p_cons 2.177992e-03   p_joint 1.617761e-04

Joint ci ratio: 1.912609e-01	ci left: 1.460918e-04	ci right 1.773470e-04	k: 419	n:2600000
Cons ci ratio: 5.204806e-02	ci left: 2.120255e-03	ci right 2.233935e-03	k: 5659	n:2600000
KS ci ratio: 9.830855e-02	ci left: 5.811037e-04	ci right 6.415560e-04	k: 1588	n:2600000
MUC20   2600000 perm   3039 sec   (855 perm/sec)   p_kst 6.107692e-04   p_cons 2.176538e-03   p_joint 1.611538e-04

Joint ci ratio: 1.912610e-01	ci left: 1.455321e-04	ci right 1.766675e-04	k: 419	n:2610000
Cons ci ratio: 5.195178e-02	ci left: 2.120073e-03	ci right 2.233527e-03	k: 5680	n:2610000
KS ci ratio: 9.821594e-02	ci left: 5.799984e-04	ci right 6.402757e-04	k: 1591	n:2610000
MUC20   2610000 perm   3061 sec   (853 perm/sec)   p_kst 6.095785e-04   p_cons 2.176245e-03   p_joint 1.605364e-04

Joint ci ratio: 1.912610e-01	ci left: 1.449766e-04	ci right 1.759932e-04	k: 419	n:2620000
Cons ci ratio: 5.186515e-02	ci left: 2.119139e-03	ci right 2.232348e-03	k: 5699	n:2620000
KS ci ratio: 9.793943e-02	ci left: 5.811355e-04	ci right 6.413512e-04	k: 1600	n:2620000
MUC20   2620000 perm   3083 sec   (850 perm/sec)   p_kst 6.106870e-04   p_cons 2.175191e-03   p_joint 1.599237e-04

Joint ci ratio: 1.910338e-01	ci left: 1.447874e-04	ci right 1.757224e-04	k: 420	n:2630000
Cons ci ratio: 5.175175e-02	ci left: 2.120464e-03	ci right 2.233489e-03	k: 5724	n:2630000
KS ci ratio: 9.763492e-02	ci left: 5.826352e-04	ci right 6.428078e-04	k: 1610	n:2630000
MUC20   2630000 perm   3108 sec   (846 perm/sec)   p_kst 6.121673e-04   p_cons 2.176426e-03   p_joint 1.596958e-04

Joint ci ratio: 1.905816e-01	ci left: 1.449603e-04	ci right 1.758505e-04	k: 422	n:2640000
Cons ci ratio: 5.165710e-02	ci left: 2.120283e-03	ci right 2.233086e-03	k: 5745	n:2640000
KS ci ratio: 9.742347e-02	ci left: 5.830151e-04	ci right 6.430891e-04	k: 1617	n:2640000
MUC20   2640000 perm   3130 sec   (843 perm/sec)   p_kst 6.125000e-04   p_cons 2.176136e-03   p_joint 1.598485e-04

Joint ci ratio: 1.903568e-01	ci left: 1.447727e-04	ci right 1.755823e-04	k: 423	n:2650000
Cons ci ratio: 5.153164e-02	ci left: 2.122712e-03	ci right 2.235361e-03	k: 5773	n:2650000
KS ci ratio: 9.733334e-02	ci left: 5.819195e-04	ci right 6.418220e-04	k: 1620	n:2650000
MUC20   2650000 perm   3153 sec   (840 perm/sec)   p_kst 6.113208e-04   p_cons 2.178491e-03   p_joint 1.596226e-04

Joint ci ratio: 1.901327e-01	ci left: 1.445865e-04	ci right 1.753160e-04	k: 424	n:2660000
Cons ci ratio: 5.143819e-02	ci left: 2.122525e-03	ci right 2.234954e-03	k: 5794	n:2660000
KS ci ratio: 9.712384e-02	ci left: 5.822995e-04	ci right 6.421047e-04	k: 1627	n:2660000
MUC20   2660000 perm   3175 sec   (838 perm/sec)   p_kst 6.116541e-04   p_cons 2.178195e-03   p_joint 1.593985e-04

Joint ci ratio: 1.899094e-01	ci left: 1.444017e-04	ci right 1.750517e-04	k: 425	n:2670000
Cons ci ratio: 5.137181e-02	ci left: 2.120121e-03	ci right 2.232274e-03	k: 5809	n:2670000
KS ci ratio: 9.706431e-02	ci left: 5.808494e-04	ci right 6.404670e-04	k: 1629	n:2670000
MUC20   2670000 perm   3197 sec   (835 perm/sec)   p_kst 6.101124e-04   p_cons 2.175655e-03   p_joint 1.591760e-04

Joint ci ratio: 1.896869e-01	ci left: 1.442182e-04	ci right 1.747894e-04	k: 426	n:2680000
Cons ci ratio: 5.125281e-02	ci left: 2.122156e-03	ci right 2.234148e-03	k: 5836	n:2680000
KS ci ratio: 9.688616e-02	ci left: 5.808666e-04	ci right 6.403703e-04	k: 1635	n:2680000
MUC20   2680000 perm   3219 sec   (833 perm/sec)   p_kst 6.100746e-04   p_cons 2.177612e-03   p_joint 1.589552e-04

Joint ci ratio: 1.896870e-01	ci left: 1.436821e-04	ci right 1.741396e-04	k: 426	n:2690000
Cons ci ratio: 5.116525e-02	ci left: 2.121606e-03	ci right 2.233373e-03	k: 5856	n:2690000
KS ci ratio: 9.673846e-02	ci left: 5.805209e-04	ci right 6.398935e-04	k: 1640	n:2690000
MUC20   2690000 perm   3242 sec   (830 perm/sec)   p_kst 6.096654e-04   p_cons 2.176952e-03   p_joint 1.583643e-04

Joint ci ratio: 2.005504e-01	ci left: 1.272967e-04	ci right 1.560156e-04	k: 381	n:2700000
Cons ci ratio: 5.103898e-02	ci left: 2.124352e-03	ci right 2.235979e-03	k: 5885	n:2700000
KS ci ratio: 9.653278e-02	ci left: 5.809008e-04	ci right 6.401788e-04	k: 1647	n:2700000
MUC20   2700000 perm   3264 sec   (827 perm/sec)   p_kst 6.100000e-04   p_cons 2.179630e-03   p_joint 1.411111e-04

Joint ci ratio: 2.002885e-01	ci left: 1.271775e-04	ci right 1.558274e-04	k: 382	n:2710000
Cons ci ratio: 5.093522e-02	ci left: 2.125256e-03	ci right 2.236697e-03	k: 5909	n:2710000
KS ci ratio: 9.641588e-02	ci left: 5.801977e-04	ci right 6.393281e-04	k: 1651	n:2710000
MUC20   2710000 perm   3287 sec   (824 perm/sec)   p_kst 6.092251e-04   p_cons 2.180443e-03   p_joint 1.409594e-04

Joint ci ratio: 2.000275e-01	ci left: 1.270591e-04	ci right 1.556406e-04	k: 383	n:2720000
Cons ci ratio: 5.083638e-02	ci left: 2.125791e-03	ci right 2.237037e-03	k: 5932	n:2720000
KS ci ratio: 9.624126e-02	ci left: 5.802173e-04	ci right 6.392366e-04	k: 1657	n:2720000
MUC20   2720000 perm   3310 sec   (822 perm/sec)   p_kst 6.091912e-04   p_cons 2.180882e-03   p_joint 1.408088e-04

Joint ci ratio: 2.000276e-01	ci left: 1.265937e-04	ci right 1.550705e-04	k: 383	n:2730000
Cons ci ratio: 5.076803e-02	ci left: 2.123791e-03	ci right 2.234778e-03	k: 5948	n:2730000
KS ci ratio: 9.615437e-02	ci left: 5.791644e-04	ci right 6.380205e-04	k: 1660	n:2730000
MUC20   2730000 perm   3332 sec   (819 perm/sec)   p_kst 6.080586e-04   p_cons 2.178755e-03   p_joint 1.402930e-04

Joint ci ratio: 2.000276e-01	ci left: 1.261317e-04	ci right 1.545045e-04	k: 383	n:2740000
Cons ci ratio: 5.067867e-02	ci left: 2.123607e-03	ci right 2.234384e-03	k: 5969	n:2740000
KS ci ratio: 9.595238e-02	ci left: 5.795441e-04	ci right 6.383080e-04	k: 1667	n:2740000
MUC20   2740000 perm   3355 sec   (817 perm/sec)   p_kst 6.083942e-04   p_cons 2.178467e-03   p_joint 1.397810e-04

Joint ci ratio: 1.992507e-01	ci left: 1.267094e-04	ci right 1.550880e-04	k: 386	n:2750000
Cons ci ratio: 5.053907e-02	ci left: 2.127733e-03	ci right 2.238410e-03	k: 6002	n:2750000
KS ci ratio: 9.578027e-02	ci left: 5.795661e-04	ci right 6.382210e-04	k: 1673	n:2750000
MUC20   2750000 perm   3377 sec   (814 perm/sec)   p_kst 6.083636e-04   p_cons 2.182545e-03   p_joint 1.403636e-04

Joint ci ratio: 1.982288e-01	ci left: 1.276275e-04	ci right 1.560474e-04	k: 390	n:2760000
Cons ci ratio: 5.045091e-02	ci left: 2.127536e-03	ci right 2.238005e-03	k: 6023	n:2760000
KS ci ratio: 9.563756e-02	ci left: 5.792345e-04	ci right 6.377635e-04	k: 1678	n:2760000
MUC20   2760000 perm   3400 sec   (812 perm/sec)   p_kst 6.079710e-04   p_cons 2.182246e-03   p_joint 1.413043e-04

Joint ci ratio: 1.979759e-01	ci left: 1.275098e-04	ci right 1.558630e-04	k: 391	n:2770000
Cons ci ratio: 5.037157e-02	ci left: 2.126628e-03	ci right 2.236871e-03	k: 6042	n:2770000
KS ci ratio: 9.552388e-02	ci left: 5.785529e-04	ci right 6.369397e-04	k: 1682	n:2770000
MUC20   2770000 perm   3423 sec   (809 perm/sec)   p_kst 6.072202e-04   p_cons 2.181227e-03   p_joint 1.411552e-04

Joint ci ratio: 1.979759e-01	ci left: 1.270512e-04	ci right 1.553023e-04	k: 391	n:2780000
Cons ci ratio: 5.027597e-02	ci left: 2.127148e-03	ci right 2.237202e-03	k: 6065	n:2780000
KS ci ratio: 9.541060e-02	ci left: 5.778763e-04	ci right 6.361218e-04	k: 1686	n:2780000
MUC20   2780000 perm   3447 sec   (807 perm/sec)   p_kst 6.064748e-04   p_cons 2.181655e-03   p_joint 1.406475e-04

Joint ci ratio: 1.979760e-01	ci left: 1.265958e-04	ci right 1.547457e-04	k: 391	n:2790000
Cons ci ratio: 5.018504e-02	ci left: 2.127310e-03	ci right 2.237168e-03	k: 6087	n:2790000
KS ci ratio: 9.515706e-02	ci left: 5.789540e-04	ci right 6.371444e-04	k: 1695	n:2790000
MUC20   2790000 perm   3470 sec   (804 perm/sec)   p_kst 6.075269e-04   p_cons 2.181720e-03   p_joint 1.401434e-04

Joint ci ratio: 1.974728e-01	ci left: 1.268226e-04	ci right 1.549426e-04	k: 393	n:2800000
Cons ci ratio: 5.008640e-02	ci left: 2.128177e-03	ci right 2.237857e-03	k: 6111	n:2800000
KS ci ratio: 9.496128e-02	ci left: 5.793269e-04	ci right 6.374283e-04	k: 1702	n:2800000
MUC20   2800000 perm   3492 sec   (802 perm/sec)   p_kst 6.078571e-04   p_cons 2.182500e-03   p_joint 1.403571e-04

Joint ci ratio: 1.972227e-01	ci left: 1.267095e-04	ci right 1.547647e-04	k: 394	n:2810000
Cons ci ratio: 5.000875e-02	ci left: 2.127280e-03	ci right 2.236739e-03	k: 6130	n:2810000
KS ci ratio: 9.482220e-02	ci left: 5.790023e-04	ci right 6.369814e-04	k: 1707	n:2810000
MUC20   2810000 perm   3515 sec   (799 perm/sec)   p_kst 6.074733e-04   p_cons 2.181495e-03   p_joint 1.402135e-04

Joint ci ratio: 1.967253e-01	ci left: 1.269345e-04	ci right 1.549600e-04	k: 396	n:2820000
Cons ci ratio: 4.990302e-02	ci left: 2.128841e-03	ci right 2.238143e-03	k: 6156	n:2820000
KS ci ratio: 9.465609e-02	ci left: 5.790264e-04	ci right 6.369007e-04	k: 1713	n:2820000
MUC20   2820000 perm   3538 sec   (797 perm/sec)   p_kst 6.074468e-04   p_cons 2.182979e-03   p_joint 1.404255e-04

Joint ci ratio: 1.959861e-01	ci left: 1.274939e-04	ci right 1.555245e-04	k: 399	n:2830000
Cons ci ratio: 4.979391e-02	ci left: 2.130740e-03	ci right 2.239893e-03	k: 6183	n:2830000
KS ci ratio: 9.451835e-02	ci left: 5.787053e-04	ci right 6.364587e-04	k: 1718	n:2830000
MUC20   2830000 perm   3561 sec   (795 perm/sec)   p_kst 6.070671e-04   p_cons 2.184806e-03   p_joint 1.409894e-04

Joint ci ratio: 1.954980e-01	ci left: 1.277147e-04	ci right 1.557156e-04	k: 401	n:2840000
Cons ci ratio: 4.971762e-02	ci left: 2.129845e-03	ci right 2.238780e-03	k: 6202	n:2840000
KS ci ratio: 9.440860e-02	ci left: 5.780428e-04	ci right 6.356594e-04	k: 1722	n:2840000
MUC20   2840000 perm   3584 sec   (792 perm/sec)   p_kst 6.063380e-04   p_cons 2.183803e-03   p_joint 1.411972e-04

Joint ci ratio: 1.954980e-01	ci left: 1.272666e-04	ci right 1.551693e-04	k: 401	n:2850000
Cons ci ratio: 4.964567e-02	ci left: 2.128609e-03	ci right 2.237319e-03	k: 6220	n:2850000
KS ci ratio: 9.435392e-02	ci left: 5.766998e-04	ci right 6.341474e-04	k: 1724	n:2850000
MUC20   2850000 perm   3608 sec   (790 perm/sec)   p_kst 6.049123e-04   p_cons 2.182456e-03   p_joint 1.407018e-04

Joint ci ratio: 1.952553e-01	ci left: 1.271541e-04	ci right 1.549934e-04	k: 402	n:2860000
Cons ci ratio: 4.956210e-02	ci left: 2.128418e-03	ci right 2.236930e-03	k: 6241	n:2860000
KS ci ratio: 9.427204e-02	ci left: 5.757075e-04	ci right 6.330038e-04	k: 1727	n:2860000
MUC20   2860000 perm   3631 sec   (788 perm/sec)   p_kst 6.038462e-04   p_cons 2.182168e-03   p_joint 1.405594e-04

Joint ci ratio: 3.703979e-01	ci left: 3.181659e-05	ci right 4.657565e-05	k: 111	n:2870000
Cons ci ratio: 4.949875e-02	ci left: 2.126508e-03	ci right 2.234780e-03	k: 6257	n:2870000
KS ci ratio: 9.408165e-02	ci left: 5.760832e-04	ci right 6.332946e-04	k: 1734	n:2870000
MUC20   2870000 perm   3655 sec   (785 perm/sec)   p_kst 6.041812e-04   p_cons 2.180139e-03   p_joint 3.867596e-05

Joint ci ratio: 3.703979e-01	ci left: 3.170612e-05	ci right 4.641393e-05	k: 111	n:2880000
Cons ci ratio: 4.943959e-02	ci left: 2.124268e-03	ci right 2.232293e-03	k: 6272	n:2880000
KS ci ratio: 9.394640e-02	ci left: 5.757782e-04	ci right 6.328726e-04	k: 1739	n:2880000
MUC20   2880000 perm   3678 sec   (783 perm/sec)   p_kst 6.038194e-04   p_cons 2.177778e-03   p_joint 3.854167e-05

Joint ci ratio: 3.687553e-01	ci left: 3.191030e-05	ci right 4.663134e-05	k: 112	n:2890000
Cons ci ratio: 4.933349e-02	ci left: 2.126145e-03	ci right 2.234026e-03	k: 6299	n:2890000
KS ci ratio: 9.375798e-02	ci left: 5.761512e-04	ci right 6.331617e-04	k: 1746	n:2890000
MUC20   2890000 perm   3702 sec   (781 perm/sec)   p_kst 6.041522e-04   p_cons 2.179585e-03   p_joint 3.875433e-05

Joint ci ratio: 3.687553e-01	ci left: 3.180026e-05	ci right 4.647054e-05	k: 112	n:2900000
Cons ci ratio: 4.926320e-02	ci left: 2.124943e-03	ci right 2.232606e-03	k: 6317	n:2900000
KS ci ratio: 9.351735e-02	ci left: 5.771952e-04	ci right 6.341545e-04	k: 1755	n:2900000
MUC20   2900000 perm   3726 sec   (778 perm/sec)   p_kst 6.051724e-04   p_cons 2.178276e-03   p_joint 3.862069e-05

Joint ci ratio: 3.687554e-01	ci left: 3.169098e-05	ci right 4.631085e-05	k: 112	n:2910000
Cons ci ratio: 4.916211e-02	ci left: 2.126466e-03	ci right 2.233979e-03	k: 6343	n:2910000
KS ci ratio: 9.330502e-02	ci left: 5.778967e-04	ci right 6.347886e-04	k: 1763	n:2910000
MUC20   2910000 perm   3749 sec   (776 perm/sec)   p_kst 6.058419e-04   p_cons 2.179725e-03   p_joint 3.848797e-05

Joint ci ratio: 3.671344e-01	ci left: 3.189325e-05	ci right 4.652624e-05	k: 113	n:2920000
Cons ci ratio: 4.908095e-02	ci left: 2.126287e-03	ci right 2.233608e-03	k: 6364	n:2920000
KS ci ratio: 9.319945e-02	ci left: 5.772555e-04	ci right 6.340165e-04	k: 1767	n:2920000
MUC20   2920000 perm   3773 sec   (774 perm/sec)   p_kst 6.051370e-04   p_cons 2.179452e-03   p_joint 3.869863e-05

Joint ci ratio: 1.914908e-01	ci left: 1.293127e-04	ci right 1.570153e-04	k: 418	n:2930000
Cons ci ratio: 4.901942e-02	ci left: 2.124424e-03	ci right 2.231513e-03	k: 6380	n:2930000
KS ci ratio: 9.304171e-02	ci left: 5.772854e-04	ci right 6.339480e-04	k: 1773	n:2930000
MUC20   2930000 perm   3797 sec   (772 perm/sec)   p_kst 6.051195e-04   p_cons 2.177474e-03   p_joint 1.426621e-04

Joint ci ratio: 1.912627e-01	ci left: 1.291967e-04	ci right 1.568376e-04	k: 419	n:2940000
Cons ci ratio: 4.894280e-02	ci left: 2.123917e-03	ci right 2.230809e-03	k: 6400	n:2940000
KS ci ratio: 9.283259e-02	ci left: 5.779797e-04	ci right 6.345760e-04	k: 1781	n:2940000
MUC20   2940000 perm   3821 sec   (769 perm/sec)   p_kst 6.057823e-04   p_cons 2.176871e-03   p_joint 1.425170e-04

Joint ci ratio: 1.912628e-01	ci left: 1.287588e-04	ci right 1.563060e-04	k: 419	n:2950000
Cons ci ratio: 4.887797e-02	ci left: 2.122410e-03	ci right 2.229080e-03	k: 6417	n:2950000
KS ci ratio: 9.270265e-02	ci left: 5.776760e-04	ci right 6.341592e-04	k: 1786	n:2950000
MUC20   2950000 perm   3845 sec   (767 perm/sec)   p_kst 6.054237e-04   p_cons 2.175254e-03   p_joint 1.420339e-04

Joint ci ratio: 1.910355e-01	ci left: 1.286454e-04	ci right 1.561319e-04	k: 420	n:2960000
Cons ci ratio: 4.878682e-02	ci left: 2.123249e-03	ci right 2.229756e-03	k: 6441	n:2960000
KS ci ratio: 9.254741e-02	ci left: 5.777045e-04	ci right 6.340907e-04	k: 1792	n:2960000
MUC20   2960000 perm   3869 sec   (765 perm/sec)   p_kst 6.054054e-04   p_cons 2.176014e-03   p_joint 1.418919e-04

Joint ci ratio: 1.901343e-01	ci left: 1.294948e-04	ci right 1.570172e-04	k: 424	n:2970000
Cons ci ratio: 4.869240e-02	ci left: 2.124415e-03	ci right 2.230769e-03	k: 6466	n:2970000
KS ci ratio: 9.229034e-02	ci left: 5.790486e-04	ci right 6.354005e-04	k: 1802	n:2970000
MUC20   2970000 perm   3893 sec   (763 perm/sec)   p_kst 6.067340e-04   p_cons 2.177104e-03   p_joint 1.427609e-04

Joint ci ratio: 1.896885e-01	ci left: 1.296995e-04	ci right 1.571933e-04	k: 426	n:2980000
Cons ci ratio: 4.860604e-02	ci left: 2.124910e-03	ci right 2.231095e-03	k: 6489	n:2980000
KS ci ratio: 9.213717e-02	ci left: 5.790725e-04	ci right 6.353281e-04	k: 1808	n:2980000
MUC20   2980000 perm   3917 sec   (761 perm/sec)   p_kst 6.067114e-04   p_cons 2.177517e-03   p_joint 1.429530e-04

Joint ci ratio: 1.894668e-01	ci left: 1.295843e-04	ci right 1.570179e-04	k: 427	n:2990000
Cons ci ratio: 4.853133e-02	ci left: 2.124411e-03	ci right 2.230403e-03	k: 6509	n:2990000
KS ci ratio: 9.201011e-02	ci left: 5.787695e-04	ci right 6.349140e-04	k: 1813	n:2990000
MUC20   2990000 perm   3942 sec   (759 perm/sec)   p_kst 6.063545e-04   p_cons 2.176923e-03   p_joint 1.428094e-04

Joint ci ratio: 1.890256e-01	ci left: 1.297875e-04	ci right 1.571927e-04	k: 429	n:3000000
Cons ci ratio: 4.845325e-02	ci left: 2.124245e-03	ci right 2.230053e-03	k: 6530	n:3000000
KS ci ratio: 9.193417e-02	ci left: 5.778172e-04	ci right 6.338207e-04	k: 1816	n:3000000
MUC20   3000000 perm   3966 sec   (756 perm/sec)   p_kst 6.053333e-04   p_cons 2.176667e-03   p_joint 1.430000e-04

Joint ci ratio: 1.888062e-01	ci left: 1.296728e-04	ci right 1.570184e-04	k: 430	n:3010000
Cons ci ratio: 4.838665e-02	ci left: 2.123095e-03	ci right 2.228697e-03	k: 6548	n:3010000
KS ci ratio: 9.178276e-02	ci left: 5.778452e-04	ci right 6.337541e-04	k: 1822	n:3010000
MUC20   3010000 perm   3991 sec   (754 perm/sec)   p_kst 6.053156e-04   p_cons 2.175415e-03   p_joint 1.428571e-04

Joint ci ratio: 1.881525e-01	ci left: 1.301899e-04	ci right 1.575386e-04	k: 433	n:3020000
Cons ci ratio: 4.830189e-02	ci left: 2.123589e-03	ci right 2.229025e-03	k: 6571	n:3020000
KS ci ratio: 9.165717e-02	ci left: 5.775494e-04	ci right 6.333491e-04	k: 1827	n:3020000
MUC20   3020000 perm   4015 sec   (752 perm/sec)   p_kst 6.049669e-04   p_cons 2.175828e-03   p_joint 1.433775e-04

Joint ci ratio: 3.578383e-01	ci left: 3.253530e-05	ci right 4.699693e-05	k: 119	n:3030000
Cons ci ratio: 4.822858e-02	ci left: 2.123101e-03	ci right 2.228349e-03	k: 6591	n:3030000
KS ci ratio: 9.158209e-02	ci left: 5.766107e-04	ci right 6.322717e-04	k: 1830	n:3030000
MUC20   3030000 perm   4040 sec   (750 perm/sec)   p_kst 6.039604e-04   p_cons 2.175248e-03   p_joint 3.927393e-05

Joint ci ratio: 3.578383e-01	ci left: 3.242827e-05	ci right 4.684233e-05	k: 119	n:3040000
Cons ci ratio: 4.816655e-02	ci left: 2.121642e-03	ci right 2.226678e-03	k: 6608	n:3040000
KS ci ratio: 9.153218e-02	ci left: 5.753568e-04	ci right 6.308648e-04	k: 1832	n:3040000
MUC20   3040000 perm   4064 sec   (748 perm/sec)   p_kst 6.026316e-04   p_cons 2.173684e-03   p_joint 3.914474e-05

Joint ci ratio: 3.578383e-01	ci left: 3.232195e-05	ci right 4.668875e-05	k: 119	n:3050000
Cons ci ratio: 4.810476e-02	ci left: 2.120192e-03	ci right 2.225019e-03	k: 6625	n:3050000
KS ci ratio: 9.138274e-02	ci left: 5.753926e-04	ci right 6.308086e-04	k: 1838	n:3050000
MUC20   3050000 perm   4090 sec   (746 perm/sec)   p_kst 6.026230e-04   p_cons 2.172131e-03   p_joint 3.901639e-05

Joint ci ratio: 3.563565e-01	ci left: 3.251380e-05	ci right 4.689217e-05	k: 120	n:3060000
Cons ci ratio: 4.802871e-02	ci left: 2.120044e-03	ci right 2.224693e-03	k: 6646	n:3060000
KS ci ratio: 9.133315e-02	ci left: 5.741509e-04	ci right 6.294157e-04	k: 1840	n:3060000
MUC20   3060000 perm   4114 sec   (744 perm/sec)   p_kst 6.013072e-04   p_cons 2.171895e-03   p_joint 3.921569e-05

Joint ci ratio: 3.548930e-01	ci left: 3.270453e-05	ci right 4.709414e-05	k: 121	n:3070000
Cons ci ratio: 4.796384e-02	ci left: 2.118931e-03	ci right 2.223380e-03	k: 6664	n:3070000
KS ci ratio: 9.118468e-02	ci left: 5.741905e-04	ci right 6.293644e-04	k: 1846	n:3070000
MUC20   3070000 perm   4139 sec   (742 perm/sec)   p_kst 6.013029e-04   p_cons 2.170684e-03   p_joint 3.941368e-05

Joint ci ratio: 3.548930e-01	ci left: 3.259835e-05	ci right 4.694124e-05	k: 121	n:3080000
Cons ci ratio: 4.792080e-02	ci left: 2.115901e-03	ci right 2.220104e-03	k: 6676	n:3080000
KS ci ratio: 9.096328e-02	ci left: 5.751817e-04	ci right 6.303097e-04	k: 1855	n:3080000
MUC20   3080000 perm   4164 sec   (740 perm/sec)   p_kst 6.022727e-04   p_cons 2.167532e-03   p_joint 3.928571e-05

Joint ci ratio: 3.548931e-01	ci left: 3.249285e-05	ci right 4.678932e-05	k: 121	n:3090000
Cons ci ratio: 4.783489e-02	ci left: 2.116727e-03	ci right 2.220779e-03	k: 6700	n:3090000
KS ci ratio: 9.081661e-02	ci left: 5.752179e-04	ci right 6.302557e-04	k: 1861	n:3090000
MUC20   3090000 perm   4189 sec   (738 perm/sec)   p_kst 6.022654e-04   p_cons 2.168285e-03   p_joint 3.915858e-05

Joint ci ratio: 3.548931e-01	ci left: 3.238804e-05	ci right 4.663839e-05	k: 121	n:3100000
Cons ci ratio: 4.777793e-02	ci left: 2.114999e-03	ci right 2.218838e-03	k: 6716	n:3100000
KS ci ratio: 9.059787e-02	ci left: 5.761998e-04	ci right 6.311917e-04	k: 1870	n:3100000
MUC20   3100000 perm   4214 sec   (736 perm/sec)   p_kst 6.032258e-04   p_cons 2.166452e-03   p_joint 3.903226e-05

Joint ci ratio: 1.851892e-01	ci left: 1.307136e-04	ci right 1.576913e-04	k: 447	n:3110000
Cons ci ratio: 4.768215e-02	ci left: 2.116776e-03	ci right 2.220489e-03	k: 6743	n:3110000
KS ci ratio: 9.052537e-02	ci left: 5.752898e-04	ci right 6.301486e-04	k: 1873	n:3110000
MUC20   3110000 perm   4240 sec   (733 perm/sec)   p_kst 6.022508e-04   p_cons 2.168167e-03   p_joint 1.437299e-04

Joint ci ratio: 1.851893e-01	ci left: 1.302947e-04	ci right 1.571859e-04	k: 447	n:3120000
Cons ci ratio: 4.763279e-02	ci left: 2.114425e-03	ci right 2.217912e-03	k: 6757	n:3120000
KS ci ratio: 9.042894e-02	ci left: 5.746990e-04	ci right 6.294399e-04	k: 1877	n:3120000
MUC20   3120000 perm   4265 sec   (731 perm/sec)   p_kst 6.016026e-04   p_cons 2.165705e-03   p_joint 1.432692e-04

Joint ci ratio: 1.849829e-01	ci left: 1.301831e-04	ci right 1.570180e-04	k: 448	n:3130000
Cons ci ratio: 4.754139e-02	ci left: 2.115878e-03	ci right 2.219232e-03	k: 6783	n:3130000
KS ci ratio: 9.028483e-02	ci left: 5.747365e-04	ci right 6.293892e-04	k: 1883	n:3130000
MUC20   3130000 perm   4291 sec   (729 perm/sec)   p_kst 6.015974e-04   p_cons 2.167093e-03   p_joint 1.431310e-04

Joint ci ratio: 1.845723e-01	ci left: 1.303760e-04	ci right 1.571843e-04	k: 450	n:3140000
Cons ci ratio: 4.742959e-02	ci left: 2.119209e-03	ci right 2.222476e-03	k: 6815	n:3140000
KS ci ratio: 9.014141e-02	ci left: 5.747738e-04	ci right 6.293387e-04	k: 1889	n:3140000
MUC20   3140000 perm   4316 sec   (728 perm/sec)   p_kst 6.015924e-04   p_cons 2.170382e-03   p_joint 1.433121e-04

Joint ci ratio: 1.839614e-01	ci left: 1.308705e-04	ci right 1.576816e-04	k: 453	n:3150000
Cons ci ratio: 4.736364e-02	ci left: 2.118442e-03	ci right 2.221524e-03	k: 6834	n:3150000
KS ci ratio: 9.004620e-02	ci left: 5.741904e-04	ci right 6.286392e-04	k: 1893	n:3150000
MUC20   3150000 perm   4342 sec   (725 perm/sec)   p_kst 6.009524e-04   p_cons 2.169524e-03   p_joint 1.438095e-04

Joint ci ratio: 1.835575e-01	ci left: 1.310602e-04	ci right 1.578446e-04	k: 455	n:3160000
Cons ci ratio: 4.728414e-02	ci left: 2.118931e-03	ci right 2.221859e-03	k: 6857	n:3160000
KS ci ratio: 8.988025e-02	ci left: 5.745387e-04	ci right 6.289149e-04	k: 1900	n:3160000
MUC20   3160000 perm   4368 sec   (723 perm/sec)   p_kst 6.012658e-04   p_cons 2.169937e-03   p_joint 1.439873e-04

Joint ci ratio: 1.835576e-01	ci left: 1.306468e-04	ci right 1.573467e-04	k: 455	n:3170000
Cons ci ratio: 4.720160e-02	ci left: 2.119728e-03	ci right 2.222510e-03	k: 6881	n:3170000
KS ci ratio: 8.969169e-02	ci left: 5.751932e-04	ci right 6.295112e-04	k: 1908	n:3170000
MUC20   3170000 perm   4394 sec   (721 perm/sec)   p_kst 6.018927e-04   p_cons 2.170662e-03   p_joint 1.435331e-04

Joint ci ratio: 1.831564e-01	ci left: 1.308360e-04	ci right 1.575096e-04	k: 457	n:3180000
Cons ci ratio: 4.712291e-02	ci left: 2.120209e-03	ci right 2.222839e-03	k: 6904	n:3180000
KS ci ratio: 8.955108e-02	ci left: 5.752290e-04	ci right 6.294607e-04	k: 1914	n:3180000
MUC20   3180000 perm   4420 sec   (719 perm/sec)   p_kst 6.018868e-04   p_cons 2.171069e-03   p_joint 1.437107e-04

Joint ci ratio: 1.829567e-01	ci left: 1.307249e-04	ci right 1.573437e-04	k: 458	n:3190000
Cons ci ratio: 4.703781e-02	ci left: 2.121308e-03	ci right 2.223800e-03	k: 6929	n:3190000
KS ci ratio: 8.941112e-02	ci left: 5.752645e-04	ci right 6.294104e-04	k: 1920	n:3190000
MUC20   3190000 perm   4446 sec   (718 perm/sec)   p_kst 6.018809e-04   p_cons 2.172100e-03   p_joint 1.435737e-04

Joint ci ratio: 1.829568e-01	ci left: 1.303164e-04	ci right 1.568520e-04	k: 458	n:3200000
Cons ci ratio: 4.696333e-02	ci left: 2.121473e-03	ci right 2.223806e-03	k: 6951	n:3200000
KS ci ratio: 8.936466e-02	ci left: 5.740778e-04	ci right 6.280825e-04	k: 1922	n:3200000
MUC20   3200000 perm   4472 sec   (716 perm/sec)   p_kst 6.006250e-04   p_cons 2.172188e-03   p_joint 1.431250e-04

Joint ci ratio: 1.825595e-01	ci left: 1.305050e-04	ci right 1.570149e-04	k: 460	n:3210000
Cons ci ratio: 4.688919e-02	ci left: 2.121637e-03	ci right 2.223813e-03	k: 6973	n:3210000
KS ci ratio: 8.917933e-02	ci left: 5.747260e-04	ci right 6.286737e-04	k: 1930	n:3210000
MUC20   3210000 perm   4498 sec   (714 perm/sec)   p_kst 6.012461e-04   p_cons 2.172274e-03   p_joint 1.433022e-04

Joint ci ratio: 1.825595e-01	ci left: 1.300997e-04	ci right 1.565273e-04	k: 460	n:3220000
Cons ci ratio: 4.681205e-02	ci left: 2.122107e-03	ci right 2.224133e-03	k: 6996	n:3220000
KS ci ratio: 8.906411e-02	ci left: 5.744593e-04	ci right 6.283087e-04	k: 1935	n:3220000
MUC20   3220000 perm   4524 sec   (712 perm/sec)   p_kst 6.009317e-04   p_cons 2.172671e-03   p_joint 1.428571e-04

Joint ci ratio: 1.821648e-01	ci left: 1.302879e-04	ci right 1.566901e-04	k: 462	n:3230000
Cons ci ratio: 4.672529e-02	ci left: 2.123493e-03	ci right 2.225391e-03	k: 7022	n:3230000
KS ci ratio: 8.890352e-02	ci left: 5.747998e-04	ci right 6.285788e-04	k: 1942	n:3230000
MUC20   3230000 perm   4550 sec   (710 perm/sec)   p_kst 6.012384e-04   p_cons 2.173994e-03   p_joint 1.430341e-04

Joint ci ratio: 1.817726e-01	ci left: 1.304749e-04	ci right 1.568518e-04	k: 464	n:3240000
Cons ci ratio: 4.664896e-02	ci left: 2.123955e-03	ci right 2.225704e-03	k: 7045	n:3240000
KS ci ratio: 8.878936e-02	ci left: 5.745346e-04	ci right 6.282163e-04	k: 1947	n:3240000
MUC20   3240000 perm   4576 sec   (708 perm/sec)   p_kst 6.009259e-04   p_cons 2.174383e-03   p_joint 1.432099e-04

Joint ci ratio: 1.813829e-01	ci left: 1.306609e-04	ci right 1.570125e-04	k: 466	n:3250000
Cons ci ratio: 4.658290e-02	ci left: 2.123502e-03	ci right 2.225081e-03	k: 7065	n:3250000
KS ci ratio: 8.865294e-02	ci left: 5.745720e-04	ci right 6.281704e-04	k: 1953	n:3250000
MUC20   3250000 perm   4602 sec   (706 perm/sec)   p_kst 6.009231e-04   p_cons 2.173846e-03   p_joint 1.433846e-04

Joint ci ratio: 1.806110e-01	ci left: 1.314315e-04	ci right 1.578134e-04	k: 470	n:3260000
Cons ci ratio: 4.651713e-02	ci left: 2.123051e-03	ci right 2.224462e-03	k: 7085	n:3260000
KS ci ratio: 8.851714e-02	ci left: 5.746093e-04	ci right 6.281247e-04	k: 1959	n:3260000
MUC20   3260000 perm   4629 sec   (704 perm/sec)   p_kst 6.009202e-04   p_cons 2.173313e-03   p_joint 1.441718e-04

Joint ci ratio: 1.800385e-01	ci left: 1.319056e-04	ci right 1.582896e-04	k: 473	n:3270000
Cons ci ratio: 4.645164e-02	ci left: 2.122604e-03	ci right 2.223847e-03	k: 7105	n:3270000
KS ci ratio: 8.840446e-02	ci left: 5.743473e-04	ci right 6.277667e-04	k: 1964	n:3270000
MUC20   3270000 perm   4786 sec   (683 perm/sec)   p_kst 6.006116e-04   p_cons 2.172783e-03   p_joint 1.446483e-04

Joint ci ratio: 1.798489e-01	ci left: 1.317946e-04	ci right 1.581256e-04	k: 474	n:3280000
Cons ci ratio: 4.636360e-02	ci left: 2.124269e-03	ci right 2.225394e-03	k: 7132	n:3280000
KS ci ratio: 8.829222e-02	ci left: 5.740869e-04	ci right 6.274109e-04	k: 1969	n:3280000
MUC20   3280000 perm   4812 sec   (682 perm/sec)   p_kst 6.003049e-04   p_cons 2.174390e-03   p_joint 1.445122e-04

Joint ci ratio: 1.796599e-01	ci left: 1.316842e-04	ci right 1.579626e-04	k: 475	n:3290000
Cons ci ratio: 4.628578e-02	ci left: 2.125022e-03	ci right 2.226009e-03	k: 7156	n:3290000
KS ci ratio: 8.815807e-02	ci left: 5.741254e-04	ci right 6.273678e-04	k: 1975	n:3290000
MUC20   3290000 perm   4839 sec   (680 perm/sec)   p_kst 6.003040e-04   p_cons 2.175076e-03   p_joint 1.443769e-04

Joint ci ratio: 1.794715e-01	ci left: 1.315746e-04	ci right 1.578006e-04	k: 476	n:3300000
Cons ci ratio: 4.619868e-02	ci left: 2.126670e-03	ci right 2.227540e-03	k: 7183	n:3300000
KS ci ratio: 8.798013e-02	ci left: 5.747565e-04	ci right 6.279443e-04	k: 1983	n:3300000
MUC20   3300000 perm   4865 sec   (678 perm/sec)   p_kst 6.009091e-04   p_cons 2.176667e-03   p_joint 1.442424e-04

Joint ci ratio: 3.451300e-01	ci left: 3.226213e-05	ci right 4.597941e-05	k: 128	n:3310000
Cons ci ratio: 4.613131e-02	ci left: 2.126516e-03	ci right 2.227228e-03	k: 7204	n:3310000
KS ci ratio: 8.791372e-02	ci left: 5.739065e-04	ci right 6.269735e-04	k: 1986	n:3310000
MUC20   3310000 perm   4892 sec   (677 perm/sec)   p_kst 6.000000e-04   p_cons 2.176435e-03   p_joint 3.867069e-05

Joint ci ratio: 3.451300e-01	ci left: 3.216496e-05	ci right 4.584092e-05	k: 128	n:3320000
Cons ci ratio: 4.605466e-02	ci left: 2.127257e-03	ci right 2.227831e-03	k: 7228	n:3320000
KS ci ratio: 8.780333e-02	ci left: 5.736508e-04	ci right 6.266241e-04	k: 1991	n:3320000
MUC20   3320000 perm   4919 sec   (675 perm/sec)   p_kst 5.996988e-04   p_cons 2.177108e-03   p_joint 3.855422e-05

Joint ci ratio: 3.451300e-01	ci left: 3.206837e-05	ci right 4.570326e-05	k: 128	n:3330000
Cons ci ratio: 4.600382e-02	ci left: 2.125618e-03	ci right 2.226001e-03	k: 7244	n:3330000
KS ci ratio: 8.762753e-02	ci left: 5.742778e-04	ci right 6.271974e-04	k: 1999	n:3330000
MUC20   3330000 perm   4945 sec   (673 perm/sec)   p_kst 6.003003e-04   p_cons 2.175375e-03   p_joint 3.843844e-05

Joint ci ratio: 3.451300e-01	ci left: 3.197235e-05	ci right 4.556643e-05	k: 128	n:3340000
Cons ci ratio: 4.594997e-02	ci left: 2.124285e-03	ci right 2.224485e-03	k: 7261	n:3340000
KS ci ratio: 8.749638e-02	ci left: 5.743155e-04	ci right 6.271553e-04	k: 2005	n:3340000
MUC20   3340000 perm   4972 sec   (672 perm/sec)   p_kst 6.002994e-04   p_cons 2.173952e-03   p_joint 3.832335e-05

Joint ci ratio: 3.438000e-01	ci left: 3.214960e-05	ci right 4.575464e-05	k: 129	n:3350000
Cons ci ratio: 4.588684e-02	ci left: 2.123846e-03	ci right 2.223883e-03	k: 7281	n:3350000
KS ci ratio: 8.738755e-02	ci left: 5.740610e-04	ci right 6.268084e-04	k: 2010	n:3350000
MUC20   3350000 perm   4999 sec   (670 perm/sec)   p_kst 6.000000e-04   p_cons 2.173433e-03   p_joint 3.850746e-05

Joint ci ratio: 3.424853e-01	ci left: 3.232589e-05	ci right 4.594163e-05	k: 130	n:3360000
Cons ci ratio: 4.583340e-02	ci left: 2.122526e-03	ci right 2.222382e-03	k: 7298	n:3360000
KS ci ratio: 8.717103e-02	ci left: 5.752638e-04	ci right 6.279840e-04	k: 2020	n:3360000
MUC20   3360000 perm   5027 sec   (668 perm/sec)   p_kst 6.011905e-04   p_cons 2.172024e-03   p_joint 3.869048e-05

Joint ci ratio: 3.411855e-01	ci left: 3.250123e-05	ci right 4.612742e-05	k: 131	n:3370000
Cons ci ratio: 4.573944e-02	ci left: 2.125028e-03	ci right 2.224792e-03	k: 7328	n:3370000
KS ci ratio: 8.708492e-02	ci left: 5.747178e-04	ci right 6.273334e-04	k: 2024	n:3370000
MUC20   3370000 perm   5055 sec   (667 perm/sec)   p_kst 6.005935e-04   p_cons 2.174481e-03   p_joint 3.887240e-05

Joint ci ratio: 3.399004e-01	ci left: 3.267563e-05	ci right 4.631201e-05	k: 132	n:3380000
Cons ci ratio: 4.569275e-02	ci left: 2.123128e-03	ci right 2.222698e-03	k: 7343	n:3380000
KS ci ratio: 8.693478e-02	ci left: 5.750434e-04	ci right 6.275934e-04	k: 2031	n:3380000
MUC20   3380000 perm   5082 sec   (665 perm/sec)   p_kst 6.008876e-04   p_cons 2.172485e-03   p_joint 3.905325e-05

Joint ci ratio: 1.660821e-01	ci left: 1.506615e-04	ci right 1.782278e-04	k: 556	n:3390000
Cons ci ratio: 4.559036e-02	ci left: 2.126489e-03	ci right 2.225987e-03	k: 7376	n:3390000
KS ci ratio: 8.684937e-02	ci left: 5.745014e-04	ci right 6.269477e-04	k: 2035	n:3390000
MUC20   3390000 perm   5109 sec   (664 perm/sec)   p_kst 6.002950e-04   p_cons 2.175811e-03   p_joint 1.640118e-04

Joint ci ratio: 1.657847e-01	ci left: 1.507822e-04	ci right 1.783162e-04	k: 558	n:3400000
Cons ci ratio: 4.553179e-02	ci left: 2.125759e-03	ci right 2.225092e-03	k: 7395	n:3400000
KS ci ratio: 8.682811e-02	ci left: 5.730994e-04	ci right 6.254042e-04	k: 2036	n:3400000
MUC20   3400000 perm   5139 sec   (662 perm/sec)   p_kst 5.988235e-04   p_cons 2.175000e-03   p_joint 1.641176e-04

Joint ci ratio: 1.654889e-01	ci left: 1.509022e-04	ci right 1.784041e-04	k: 560	n:3410000
Cons ci ratio: 4.547036e-02	ci left: 2.125324e-03	ci right 2.224498e-03	k: 7415	n:3410000
KS ci ratio: 8.657341e-02	ci left: 5.748616e-04	ci right 6.271655e-04	k: 2048	n:3410000
MUC20   3410000 perm   5167 sec   (660 perm/sec)   p_kst 6.005865e-04   p_cons 2.174487e-03   p_joint 1.642229e-04

Joint ci ratio: 1.654889e-01	ci left: 1.504609e-04	ci right 1.778825e-04	k: 560	n:3420000
Cons ci ratio: 4.540612e-02	ci left: 2.125180e-03	ci right 2.224204e-03	k: 7436	n:3420000
KS ci ratio: 8.638386e-02	ci left: 5.757554e-04	ci right 6.280202e-04	k: 2057	n:3420000
MUC20   3420000 perm   5195 sec   (658 perm/sec)   p_kst 6.014620e-04   p_cons 2.174269e-03   p_joint 1.637427e-04

Joint ci ratio: 1.650482e-01	ci left: 1.508607e-04	ci right 1.782746e-04	k: 563	n:3430000
Cons ci ratio: 4.532084e-02	ci left: 2.127055e-03	ci right 2.225975e-03	k: 7464	n:3430000
KS ci ratio: 8.630006e-02	ci left: 5.752178e-04	ci right 6.273806e-04	k: 2061	n:3430000
MUC20   3430000 perm   5222 sec   (657 perm/sec)   p_kst 6.008746e-04   p_cons 2.176093e-03   p_joint 1.641399e-04

Joint ci ratio: 1.649021e-01	ci left: 1.507009e-04	ci right 1.780591e-04	k: 564	n:3440000
Cons ci ratio: 4.523907e-02	ci left: 2.128631e-03	ci right 2.227442e-03	k: 7491	n:3440000
KS ci ratio: 8.627920e-02	ci left: 5.738301e-04	ci right 6.258538e-04	k: 2062	n:3440000
MUC20   3440000 perm   5250 sec   (655 perm/sec)   p_kst 5.994186e-04   p_cons 2.177616e-03   p_joint 1.639535e-04

Joint ci ratio: 1.647563e-01	ci left: 1.505420e-04	ci right 1.778448e-04	k: 565	n:3450000
Cons ci ratio: 4.517279e-02	ci left: 2.128766e-03	ci right 2.227435e-03	k: 7513	n:3450000
KS ci ratio: 8.613318e-02	ci left: 5.741520e-04	ci right 6.261124e-04	k: 2069	n:3450000
MUC20   3450000 perm   5277 sec   (654 perm/sec)   p_kst 5.997101e-04   p_cons 2.177681e-03   p_joint 1.637681e-04

Joint ci ratio: 1.644660e-01	ci left: 1.506611e-04	ci right 1.779326e-04	k: 567	n:3460000
Cons ci ratio: 4.510081e-02	ci left: 2.129472e-03	ci right 2.228012e-03	k: 7537	n:3460000
KS ci ratio: 8.596720e-02	ci left: 5.747550e-04	ci right 6.266647e-04	k: 2077	n:3460000
MUC20   3460000 perm   5304 sec   (652 perm/sec)   p_kst 6.002890e-04   p_cons 2.178324e-03   p_joint 1.638728e-04

Joint ci ratio: 1.644661e-01	ci left: 1.502269e-04	ci right 1.774198e-04	k: 567	n:3470000
Cons ci ratio: 4.504708e-02	ci left: 2.128464e-03	ci right 2.226837e-03	k: 7555	n:3470000
KS ci ratio: 8.588460e-02	ci left: 5.742266e-04	ci right 6.260363e-04	k: 2081	n:3470000
MUC20   3470000 perm   5333 sec   (651 perm/sec)   p_kst 5.997118e-04   p_cons 2.177233e-03   p_joint 1.634006e-04

Joint ci ratio: 1.644661e-01	ci left: 1.497952e-04	ci right 1.769100e-04	k: 567	n:3480000
Cons ci ratio: 4.499355e-02	ci left: 2.127462e-03	ci right 2.225668e-03	k: 7573	n:3480000
KS ci ratio: 8.576112e-02	ci left: 5.742637e-04	ci right 6.259984e-04	k: 2087	n:3480000
MUC20   3480000 perm   5361 sec   (649 perm/sec)   p_kst 5.997126e-04   p_cons 2.176149e-03   p_joint 1.629310e-04

Joint ci ratio: 1.640335e-01	ci left: 1.501903e-04	ci right 1.772980e-04	k: 570	n:3490000
Cons ci ratio: 4.491057e-02	ci left: 2.129299e-03	ci right 2.227404e-03	k: 7601	n:3490000
KS ci ratio: 8.557685e-02	ci left: 5.751418e-04	ci right 6.268388e-04	k: 2096	n:3490000
MUC20   3490000 perm   5389 sec   (648 perm/sec)   p_kst 6.005731e-04   p_cons 2.177937e-03   p_joint 1.633238e-04

Joint ci ratio: 1.638900e-01	ci left: 1.500352e-04	ci right 1.770889e-04	k: 571	n:3500000
Cons ci ratio: 4.484572e-02	ci left: 2.129430e-03	ci right 2.227396e-03	k: 7623	n:3500000
KS ci ratio: 8.549537e-02	ci left: 5.746169e-04	ci right 6.262151e-04	k: 2100	n:3500000
MUC20   3500000 perm   5417 sec   (646 perm/sec)   p_kst 6.000000e-04   p_cons 2.178000e-03   p_joint 1.631429e-04

Joint ci ratio: 1.636042e-01	ci left: 1.501542e-04	ci right 1.771775e-04	k: 573	n:3510000
Cons ci ratio: 4.478409e-02	ci left: 2.129279e-03	ci right 2.227101e-03	k: 7644	n:3510000
KS ci ratio: 8.539383e-02	ci left: 5.743739e-04	ci right 6.258859e-04	k: 2105	n:3510000
MUC20   3510000 perm   5445 sec   (645 perm/sec)   p_kst 5.997151e-04   p_cons 2.177778e-03   p_joint 1.632479e-04

Joint ci ratio: 1.631783e-01	ci left: 1.505450e-04	ci right 1.775612e-04	k: 576	n:3520000
Cons ci ratio: 4.470227e-02	ci left: 2.131096e-03	ci right 2.228817e-03	k: 7672	n:3520000
KS ci ratio: 8.521191e-02	ci left: 5.752445e-04	ci right 6.267192e-04	k: 2114	n:3520000
MUC20   3520000 perm   5473 sec   (643 perm/sec)   p_kst 6.005682e-04   p_cons 2.179545e-03   p_joint 1.636364e-04

Joint ci ratio: 1.630371e-01	ci left: 1.503903e-04	ci right 1.773530e-04	k: 577	n:3530000
Cons ci ratio: 4.465577e-02	ci left: 2.129541e-03	ci right 2.227086e-03	k: 7688	n:3530000
KS ci ratio: 8.509130e-02	ci left: 5.752784e-04	ci right 6.266797e-04	k: 2120	n:3530000
MUC20   3530000 perm   5502 sec   (642 perm/sec)   p_kst 6.005666e-04   p_cons 2.177904e-03   p_joint 1.634561e-04

Joint ci ratio: 1.630372e-01	ci left: 1.499654e-04	ci right 1.768521e-04	k: 577	n:3540000
Cons ci ratio: 4.456307e-02	ci left: 2.132464e-03	ci right 2.229935e-03	k: 7720	n:3540000
KS ci ratio: 8.493125e-02	ci left: 5.758652e-04	ci right 6.272173e-04	k: 2128	n:3540000
MUC20   3540000 perm   5531 sec   (640 perm/sec)   p_kst 6.011299e-04   p_cons 2.180791e-03   p_joint 1.629944e-04

Joint ci ratio: 1.626157e-01	ci left: 1.503536e-04	ci right 1.772334e-04	k: 580	n:3550000
Cons ci ratio: 4.449684e-02	ci left: 2.132863e-03	ci right 2.230205e-03	k: 7743	n:3550000
KS ci ratio: 8.479196e-02	ci left: 5.761730e-04	ci right 6.274642e-04	k: 2135	n:3550000
MUC20   3550000 perm   5559 sec   (639 perm/sec)   p_kst 6.014085e-04   p_cons 2.181127e-03   p_joint 1.633803e-04

Joint ci ratio: 1.623365e-01	ci left: 1.504702e-04	ci right 1.773201e-04	k: 582	n:3560000
Cons ci ratio: 4.441944e-02	ci left: 2.134372e-03	ci right 2.231609e-03	k: 7770	n:3560000
KS ci ratio: 8.463360e-02	ci left: 5.767541e-04	ci right 6.279964e-04	k: 2143	n:3560000
MUC20   3560000 perm   5588 sec   (637 perm/sec)   p_kst 6.019663e-04   p_cons 2.182584e-03   p_joint 1.634831e-04

Joint ci ratio: 1.617824e-01	ci left: 1.511238e-04	ci right 1.779893e-04	k: 586	n:3570000
Cons ci ratio: 4.433674e-02	ci left: 2.136427e-03	ci right 2.233571e-03	k: 7799	n:3570000
KS ci ratio: 8.451542e-02	ci left: 5.767837e-04	ci right 6.279535e-04	k: 2149	n:3570000
MUC20   3570000 perm   5616 sec   (636 perm/sec)   p_kst 6.019608e-04   p_cons 2.184594e-03   p_joint 1.641457e-04

Joint ci ratio: 1.613705e-01	ci left: 1.515057e-04	ci right 1.783639e-04	k: 589	n:3580000
Cons ci ratio: 4.428286e-02	ci left: 2.135708e-03	ci right 2.232698e-03	k: 7818	n:3580000
KS ci ratio: 8.431951e-02	ci left: 5.779069e-04	ci right 6.290517e-04	k: 2159	n:3580000
MUC20   3580000 perm   5644 sec   (634 perm/sec)   p_kst 6.030726e-04   p_cons 2.183799e-03   p_joint 1.645251e-04

Joint ci ratio: 1.610977e-01	ci left: 1.516184e-04	ci right 1.784467e-04	k: 591	n:3590000
Cons ci ratio: 4.422917e-02	ci left: 2.134992e-03	ci right 2.231830e-03	k: 7837	n:3590000
KS ci ratio: 8.424157e-02	ci left: 5.773879e-04	ci right 6.284371e-04	k: 2163	n:3590000
MUC20   3590000 perm   5673 sec   (633 perm/sec)   p_kst 6.025070e-04   p_cons 2.183008e-03   p_joint 1.646240e-04

Joint ci ratio: 1.608263e-01	ci left: 1.517304e-04	ci right 1.785289e-04	k: 593	n:3600000
Cons ci ratio: 4.415597e-02	ci left: 2.136204e-03	ci right 2.232932e-03	k: 7863	n:3600000
KS ci ratio: 8.414443e-02	ci left: 5.771437e-04	ci right 6.281096e-04	k: 2168	n:3600000
MUC20   3600000 perm   5702 sec   (631 perm/sec)   p_kst 6.022222e-04   p_cons 2.184167e-03   p_joint 1.647222e-04

Joint ci ratio: 1.606911e-01	ci left: 1.515759e-04	ci right 1.783225e-04	k: 594	n:3610000
Cons ci ratio: 4.408033e-02	ci left: 2.137684e-03	ci right 2.234309e-03	k: 7890	n:3610000
KS ci ratio: 8.402829e-02	ci left: 5.771720e-04	ci right 6.280667e-04	k: 2174	n:3610000
MUC20   3610000 perm   5730 sec   (630 perm/sec)   p_kst 6.022161e-04   p_cons 2.185596e-03   p_joint 1.645429e-04

Joint ci ratio: 1.604217e-01	ci left: 1.516875e-04	ci right 1.784046e-04	k: 596	n:3620000
Cons ci ratio: 4.402179e-02	ci left: 2.137516e-03	ci right 2.234002e-03	k: 7911	n:3620000
KS ci ratio: 8.397043e-02	ci left: 5.763889e-04	ci right 6.271778e-04	k: 2177	n:3620000
MUC20   3620000 perm   5760 sec   (629 perm/sec)   p_kst 6.013812e-04   p_cons 2.185359e-03   p_joint 1.646409e-04

Joint ci ratio: 1.601536e-01	ci left: 1.517985e-04	ci right 1.784861e-04	k: 598	n:3630000
Cons ci ratio: 4.395794e-02	ci left: 2.137894e-03	ci right 2.234253e-03	k: 7934	n:3630000
KS ci ratio: 8.393195e-02	ci left: 5.753405e-04	ci right 6.260126e-04	k: 2179	n:3630000
MUC20   3630000 perm   5790 sec   (627 perm/sec)   p_kst 6.002755e-04   p_cons 2.185675e-03   p_joint 1.647383e-04

Joint ci ratio: 1.600201e-01	ci left: 1.516452e-04	ci right 1.782815e-04	k: 599	n:3640000
Cons ci ratio: 4.390543e-02	ci left: 2.137183e-03	ci right 2.233392e-03	k: 7953	n:3640000
KS ci ratio: 8.383587e-02	ci left: 5.751047e-04	ci right 6.256952e-04	k: 2184	n:3640000
MUC20   3640000 perm   5872 sec   (620 perm/sec)   p_kst 6.000000e-04   p_cons 2.184890e-03   p_joint 1.645604e-04

Joint ci ratio: 1.598869e-01	ci left: 1.514927e-04	ci right 1.780780e-04	k: 600	n:3650000
Cons ci ratio: 4.385310e-02	ci left: 2.136476e-03	ci right 2.232536e-03	k: 7972	n:3650000
KS ci ratio: 8.366371e-02	ci left: 5.759432e-04	ci right 6.264984e-04	k: 2193	n:3650000
MUC20   3650000 perm   5901 sec   (619 perm/sec)   p_kst 6.008219e-04   p_cons 2.184110e-03   p_joint 1.643836e-04

Joint ci ratio: 1.598870e-01	ci left: 1.510788e-04	ci right 1.775914e-04	k: 600	n:3660000
Cons ci ratio: 4.379821e-02	ci left: 2.136043e-03	ci right 2.231960e-03	k: 7992	n:3660000
KS ci ratio: 8.358757e-02	ci left: 5.754396e-04	ci right 6.259024e-04	k: 2197	n:3660000
MUC20   3660000 perm   5930 sec   (617 perm/sec)   p_kst 6.002732e-04   p_cons 2.183607e-03   p_joint 1.639344e-04

Joint ci ratio: 1.596216e-01	ci left: 1.511903e-04	ci right 1.776743e-04	k: 602	n:3670000
Cons ci ratio: 4.371347e-02	ci left: 2.138577e-03	ci right 2.234418e-03	k: 8023	n:3670000
KS ci ratio: 8.337914e-02	ci left: 5.768064e-04	ci right 6.272567e-04	k: 2208	n:3670000
MUC20   3670000 perm   5960 sec   (616 perm/sec)   p_kst 6.016349e-04   p_cons 2.186104e-03   p_joint 1.640327e-04

Joint ci ratio: 1.593575e-01	ci left: 1.513013e-04	ci right 1.777566e-04	k: 604	n:3680000
Cons ci ratio: 4.364823e-02	ci left: 2.139216e-03	ci right 2.234939e-03	k: 8047	n:3680000
KS ci ratio: 8.330377e-02	ci left: 5.763032e-04	ci right 6.266619e-04	k: 2212	n:3680000
MUC20   3680000 perm   5989 sec   (614 perm/sec)   p_kst 6.010870e-04   p_cons 2.186685e-03   p_joint 1.641304e-04

Joint ci ratio: 1.587030e-01	ci left: 1.521923e-04	ci right 1.786838e-04	k: 609	n:3690000
Cons ci ratio: 4.358598e-02	ci left: 2.139584e-03	ci right 2.235183e-03	k: 8070	n:3690000
KS ci ratio: 8.317232e-02	ci left: 5.765990e-04	ci right 6.269001e-04	k: 2219	n:3690000
MUC20   3690000 perm   6018 sec   (613 perm/sec)   p_kst 6.013550e-04   p_cons 2.186992e-03   p_joint 1.650407e-04

Joint ci ratio: 1.587031e-01	ci left: 1.517810e-04	ci right 1.782008e-04	k: 609	n:3700000
Cons ci ratio: 4.354558e-02	ci left: 2.137811e-03	ci right 2.233241e-03	k: 8085	n:3700000
KS ci ratio: 8.294837e-02	ci left: 5.782165e-04	ci right 6.285163e-04	k: 2231	n:3700000
MUC20   3700000 perm   6047 sec   (612 perm/sec)   p_kst 6.029730e-04   p_cons 2.185135e-03   p_joint 1.645946e-04

Joint ci ratio: 1.587031e-01	ci left: 1.513719e-04	ci right 1.777205e-04	k: 609	n:3710000
Cons ci ratio: 4.350259e-02	ci left: 2.136315e-03	ci right 2.231581e-03	k: 8101	n:3710000
KS ci ratio: 8.291128e-02	ci left: 5.771859e-04	ci right 6.273725e-04	k: 2233	n:3710000
MUC20   3710000 perm   6076 sec   (611 perm/sec)   p_kst 6.018868e-04   p_cons 2.183558e-03   p_joint 1.641509e-04

Joint ci ratio: 1.557927e-01	ci left: 1.569045e-04	ci right 1.836686e-04	k: 632	n:3720000
Cons ci ratio: 4.343561e-02	ci left: 2.137219e-03	ci right 2.232375e-03	k: 8126	n:3720000
KS ci ratio: 8.276320e-02	ci left: 5.777403e-04	ci right 6.278811e-04	k: 2241	n:3720000
MUC20   3720000 perm   6106 sec   (609 perm/sec)   p_kst 6.024194e-04   p_cons 2.184409e-03   p_joint 1.698925e-04

Joint ci ratio: 1.554248e-01	ci left: 1.572569e-04	ci right 1.840118e-04	k: 635	n:3730000
Cons ci ratio: 4.338228e-02	ci left: 2.136793e-03	ci right 2.231811e-03	k: 8146	n:3730000
KS ci ratio: 8.268949e-02	ci left: 5.772416e-04	ci right 6.272923e-04	k: 2245	n:3730000
MUC20   3730000 perm   6136 sec   (608 perm/sec)   p_kst 6.018767e-04   p_cons 2.183914e-03   p_joint 1.702413e-04

Joint ci ratio: 1.554249e-01	ci left: 1.568364e-04	ci right 1.835198e-04	k: 635	n:3740000
Cons ci ratio: 4.332914e-02	ci left: 2.136370e-03	ci right 2.231249e-03	k: 8166	n:3740000
KS ci ratio: 8.256093e-02	ci left: 5.775311e-04	ci right 6.275254e-04	k: 2252	n:3740000
MUC20   3740000 perm   6166 sec   (607 perm/sec)   p_kst 6.021390e-04   p_cons 2.183422e-03   p_joint 1.697861e-04

Joint ci ratio: 1.553028e-01	ci left: 1.566744e-04	ci right 1.833074e-04	k: 636	n:3750000
Cons ci ratio: 4.327619e-02	ci left: 2.135948e-03	ci right 2.230690e-03	k: 8186	n:3750000
KS ci ratio: 8.241472e-02	ci left: 5.780804e-04	ci right 6.280293e-04	k: 2260	n:3750000
MUC20   3750000 perm   6195 sec   (605 perm/sec)   p_kst 6.026667e-04   p_cons 2.182933e-03   p_joint 1.696000e-04

Joint ci ratio: 1.553029e-01	ci left: 1.562578e-04	ci right 1.828199e-04	k: 636	n:3760000
Cons ci ratio: 4.322872e-02	ci left: 2.135003e-03	ci right 2.229596e-03	k: 8204	n:3760000
KS ci ratio: 8.230558e-02	ci left: 5.781058e-04	ci right 6.279876e-04	k: 2266	n:3760000
MUC20   3760000 perm   6225 sec   (604 perm/sec)   p_kst 6.026596e-04   p_cons 2.181915e-03   p_joint 1.691489e-04

Joint ci ratio: 1.553029e-01	ci left: 1.558433e-04	ci right 1.823350e-04	k: 636	n:3770000
Cons ci ratio: 4.317088e-02	ci left: 2.135112e-03	ci right 2.229581e-03	k: 8226	n:3770000
KS ci ratio: 8.219688e-02	ci left: 5.781312e-04	ci right 6.279461e-04	k: 2272	n:3770000
MUC20   3770000 perm   6255 sec   (603 perm/sec)   p_kst 6.026525e-04   p_cons 2.181963e-03   p_joint 1.687003e-04

Joint ci ratio: 1.574181e-01	ci left: 1.511096e-04	ci right 1.771795e-04	k: 619	n:3780000
Cons ci ratio: 4.312899e-02	ci left: 2.133651e-03	ci right 2.227961e-03	k: 8242	n:3780000
KS ci ratio: 8.210663e-02	ci left: 5.778973e-04	ci right 6.276348e-04	k: 2277	n:3780000
MUC20   3780000 perm   6285 sec   (601 perm/sec)   p_kst 6.023810e-04   p_cons 2.180423e-03   p_joint 1.637566e-04

Joint ci ratio: 1.574181e-01	ci left: 1.507109e-04	ci right 1.767120e-04	k: 619	n:3790000
Cons ci ratio: 4.307678e-02	ci left: 2.133241e-03	ci right 2.227416e-03	k: 8262	n:3790000
KS ci ratio: 8.201668e-02	ci left: 5.776647e-04	ci right 6.273251e-04	k: 2282	n:3790000
MUC20   3790000 perm   6316 sec   (600 perm/sec)   p_kst 6.021108e-04   p_cons 2.179947e-03   p_joint 1.633245e-04

Joint ci ratio: 1.574181e-01	ci left: 1.503142e-04	ci right 1.762469e-04	k: 619	n:3800000
Cons ci ratio: 4.303516e-02	ci left: 2.131793e-03	ci right 2.225810e-03	k: 8278	n:3800000
KS ci ratio: 8.192703e-02	ci left: 5.774333e-04	ci right 6.270170e-04	k: 2287	n:3800000
MUC20   3800000 perm   6345 sec   (599 perm/sec)   p_kst 6.018421e-04   p_cons 2.178421e-03   p_joint 1.628947e-04

Joint ci ratio: 1.572913e-01	ci left: 1.501719e-04	ci right 1.760571e-04	k: 620	n:3810000
Cons ci ratio: 4.297291e-02	ci left: 2.132429e-03	ci right 2.226335e-03	k: 8302	n:3810000
KS ci ratio: 8.178415e-02	ci left: 5.779745e-04	ci right 6.275140e-04	k: 2295	n:3810000
MUC20   3810000 perm   6377 sec   (597 perm/sec)   p_kst 6.023622e-04   p_cons 2.179003e-03   p_joint 1.627297e-04

Joint ci ratio: 1.572914e-01	ci left: 1.497787e-04	ci right 1.755963e-04	k: 620	n:3820000
Cons ci ratio: 4.291867e-02	ci left: 2.132285e-03	ci right 2.226064e-03	k: 8323	n:3820000
KS ci ratio: 8.171303e-02	ci left: 5.774872e-04	ci right 6.269398e-04	k: 2299	n:3820000
MUC20   3820000 perm   6408 sec   (596 perm/sec)   p_kst 6.018325e-04   p_cons 2.178796e-03   p_joint 1.623037e-04

Joint ci ratio: 1.569128e-01	ci left: 1.501402e-04	ci right 1.759518e-04	k: 623	n:3830000
Cons ci ratio: 4.286207e-02	ci left: 2.132400e-03	ci right 2.226057e-03	k: 8345	n:3830000
KS ci ratio: 8.164209e-02	ci left: 5.770025e-04	ci right 6.263686e-04	k: 2303	n:3830000
MUC20   3830000 perm   6439 sec   (595 perm/sec)   p_kst 6.013055e-04   p_cons 2.178851e-03   p_joint 1.626632e-04

Joint ci ratio: 1.565369e-01	ci left: 1.504998e-04	ci right 1.763055e-04	k: 626	n:3840000
Cons ci ratio: 4.280312e-02	ci left: 2.132773e-03	ci right 2.226314e-03	k: 8368	n:3840000
KS ci ratio: 8.153599e-02	ci left: 5.770305e-04	ci right 6.263318e-04	k: 2309	n:3840000
MUC20   3840000 perm   6469 sec   (594 perm/sec)   p_kst 6.013021e-04   p_cons 2.179167e-03   p_joint 1.630208e-04

Joint ci ratio: 1.565370e-01	ci left: 1.501089e-04	ci right 1.758476e-04	k: 626	n:3850000
Cons ci ratio: 4.273166e-02	ci left: 2.134428e-03	ci right 2.227882e-03	k: 8396	n:3850000
KS ci ratio: 8.146551e-02	ci left: 5.765495e-04	ci right 6.257651e-04	k: 2313	n:3850000
MUC20   3850000 perm   6501 sec   (592 perm/sec)   p_kst 6.007792e-04   p_cons 2.180779e-03   p_joint 1.625974e-04

Joint ci ratio: 1.564123e-01	ci left: 1.499689e-04	ci right 1.756612e-04	k: 627	n:3860000
Cons ci ratio: 4.265803e-02	ci left: 2.136331e-03	ci right 2.229703e-03	k: 8425	n:3860000
KS ci ratio: 8.134256e-02	ci left: 5.768324e-04	ci right 6.259943e-04	k: 2320	n:3860000
MUC20   3860000 perm   6533 sec   (591 perm/sec)   p_kst 6.010363e-04   p_cons 2.182642e-03   p_joint 1.624352e-04

Joint ci ratio: 1.562879e-01	ci left: 1.498297e-04	ci right 1.754758e-04	k: 628	n:3870000
Cons ci ratio: 4.260750e-02	ci left: 2.135924e-03	ci right 2.229165e-03	k: 8445	n:3870000
KS ci ratio: 8.120271e-02	ci left: 5.773670e-04	ci right 6.264859e-04	k: 2328	n:3870000
MUC20   3870000 perm   6564 sec   (590 perm/sec)   p_kst 6.015504e-04   p_cons 2.182171e-03   p_joint 1.622739e-04

Joint ci ratio: 1.560400e-01	ci left: 1.499388e-04	ci right 1.755591e-04	k: 630	n:3880000
Cons ci ratio: 4.254205e-02	ci left: 2.137049e-03	ci right 2.230192e-03	k: 8471	n:3880000
KS ci ratio: 8.115050e-02	ci left: 5.766365e-04	ci right 6.256602e-04	k: 2331	n:3880000
MUC20   3880000 perm   6595 sec   (588 perm/sec)   p_kst 6.007732e-04   p_cons 2.183247e-03   p_joint 1.623711e-04

Joint ci ratio: 1.559165e-01	ci left: 1.498004e-04	ci right 1.753749e-04	k: 631	n:3890000
Cons ci ratio: 4.247189e-02	ci left: 2.138676e-03	ci right 2.231733e-03	k: 8499	n:3890000
KS ci ratio: 8.109838e-02	ci left: 5.759097e-04	ci right 6.248387e-04	k: 2334	n:3890000
MUC20   3890000 perm   6627 sec   (587 perm/sec)   p_kst 6.000000e-04   p_cons 2.184833e-03   p_joint 1.622108e-04

Joint ci ratio: 1.556704e-01	ci left: 1.499092e-04	ci right 1.754580e-04	k: 633	n:3900000
Cons ci ratio: 4.243949e-02	ci left: 2.136490e-03	ci right 2.229379e-03	k: 8512	n:3900000
KS ci ratio: 8.095979e-02	ci left: 5.764427e-04	ci right 6.253293e-04	k: 2342	n:3900000
MUC20   3900000 perm   6659 sec   (586 perm/sec)   p_kst 6.005128e-04   p_cons 2.182564e-03   p_joint 1.623077e-04

Joint ci ratio: 1.554254e-01	ci left: 1.500174e-04	ci right 1.755407e-04	k: 635	n:3910000
Cons ci ratio: 4.238227e-02	ci left: 2.136846e-03	ci right 2.229622e-03	k: 8535	n:3910000
KS ci ratio: 8.087355e-02	ci left: 5.762213e-04	ci right 6.250347e-04	k: 2347	n:3910000
MUC20   3910000 perm   6691 sec   (584 perm/sec)   p_kst 6.002558e-04   p_cons 2.182864e-03   p_joint 1.624041e-04

Joint ci ratio: 1.553034e-01	ci left: 1.498798e-04	ci right 1.753579e-04	k: 636	n:3920000
Cons ci ratio: 4.231042e-02	ci left: 2.138715e-03	ci right 2.231411e-03	k: 8564	n:3920000
KS ci ratio: 8.075326e-02	ci left: 5.765010e-04	ci right 6.252620e-04	k: 2354	n:3920000
MUC20   3920000 perm   6726 sec   (583 perm/sec)   p_kst 6.005102e-04   p_cons 2.184694e-03   p_joint 1.622449e-04

Joint ci ratio: 1.551817e-01	ci left: 1.497430e-04	ci right 1.751760e-04	k: 637	n:3930000
Cons ci ratio: 4.225372e-02	ci left: 2.139063e-03	ci right 2.231647e-03	k: 8587	n:3930000
KS ci ratio: 8.070190e-02	ci left: 5.757820e-04	ci right 6.244498e-04	k: 2357	n:3930000
MUC20   3930000 perm   6759 sec   (581 perm/sec)   p_kst 5.997455e-04   p_cons 2.184987e-03   p_joint 1.620865e-04

Joint ci ratio: 1.550602e-01	ci left: 1.496069e-04	ci right 1.749951e-04	k: 638	n:3940000
Cons ci ratio: 4.220216e-02	ci left: 2.138908e-03	ci right 2.231369e-03	k: 8608	n:3940000
KS ci ratio: 8.061649e-02	ci left: 5.755641e-04	ci right 6.241595e-04	k: 2362	n:3940000
MUC20   3940000 perm   6792 sec   (580 perm/sec)   p_kst 5.994924e-04   p_cons 2.184772e-03   p_joint 1.619289e-04

Joint ci ratio: 1.545771e-01	ci left: 1.502016e-04	ci right 1.756039e-04	k: 642	n:3950000
Cons ci ratio: 4.215568e-02	ci left: 2.138252e-03	ci right 2.230581e-03	k: 8627	n:3950000
KS ci ratio: 8.053134e-02	ci left: 5.753473e-04	ci right 6.238707e-04	k: 2367	n:3950000
MUC20   3950000 perm   6823 sec   (579 perm/sec)   p_kst 5.992405e-04   p_cons 2.184051e-03   p_joint 1.625316e-04

Joint ci ratio: 1.190452e-01	ci left: 2.574394e-04	ci right 2.902683e-04	k: 1083	n:3960000
Cons ci ratio: 4.209716e-02	ci left: 2.138850e-03	ci right 2.231073e-03	k: 8651	n:3960000
KS ci ratio: 8.032801e-02	ci left: 5.768637e-04	ci right 6.253865e-04	k: 2379	n:3960000
MUC20   3960000 perm   6856 sec   (578 perm/sec)   p_kst 6.007576e-04   p_cons 2.184596e-03   p_joint 2.734848e-04

Joint ci ratio: 1.189904e-01	ci left: 2.570353e-04	ci right 2.897965e-04	k: 1084	n:3970000
Cons ci ratio: 4.206318e-02	ci left: 2.136951e-03	ci right 2.229016e-03	k: 8665	n:3970000
KS ci ratio: 8.027746e-02	ci left: 5.761512e-04	ci right 6.245820e-04	k: 2382	n:3970000
MUC20   3970000 perm   6887 sec   (576 perm/sec)   p_kst 6.000000e-04   p_cons 2.182620e-03   p_joint 2.730479e-04

Joint ci ratio: 1.188262e-01	ci left: 2.571208e-04	ci right 2.898446e-04	k: 1087	n:3980000
Cons ci ratio: 4.200989e-02	ci left: 2.137052e-03	ci right 2.229002e-03	k: 8687	n:3980000
KS ci ratio: 8.021019e-02	ci left: 5.756884e-04	ci right 6.240379e-04	k: 2386	n:3980000
MUC20   3980000 perm   6919 sec   (575 perm/sec)   p_kst 5.994975e-04   p_cons 2.182663e-03   p_joint 2.731156e-04

Joint ci ratio: 1.186083e-01	ci left: 2.574492e-04	ci right 2.901504e-04	k: 1091	n:3990000
Cons ci ratio: 4.196888e-02	ci left: 2.135912e-03	ci right 2.227721e-03	k: 8704	n:3990000
KS ci ratio: 8.010957e-02	ci left: 5.757192e-04	ci right 6.240078e-04	k: 2392	n:3990000
MUC20   3990000 perm   6952 sec   (574 perm/sec)   p_kst 5.994987e-04   p_cons 2.181454e-03   p_joint 2.734336e-04

Joint ci ratio: 1.182838e-01	ci left: 2.582611e-04	ci right 2.909694e-04	k: 1097	n:4000000
Cons ci ratio: 4.191113e-02	ci left: 2.136509e-03	ci right 2.228214e-03	k: 8728	n:4000000
KS ci ratio: 8.000933e-02	ci left: 5.757499e-04	ci right 6.239778e-04	k: 2398	n:4000000
MUC20   4000000 perm   6984 sec   (573 perm/sec)   p_kst 5.995000e-04   p_cons 2.182000e-03   p_joint 2.742500e-04

Joint ci ratio: 1.180689e-01	ci left: 2.585851e-04	ci right 2.912708e-04	k: 1101	n:4010000
Cons ci ratio: 4.183686e-02	ci left: 2.138831e-03	ci right 2.230469e-03	k: 8759	n:4010000
KS ci ratio: 7.989284e-02	ci left: 5.760248e-04	ci right 6.242023e-04	k: 2405	n:4010000
MUC20   4010000 perm   7016 sec   (572 perm/sec)   p_kst 5.997506e-04   p_cons 2.184289e-03   p_joint 2.745636e-04

Joint ci ratio: 1.179085e-01	ci left: 2.586661e-04	ci right 2.913145e-04	k: 1104	n:4020000
Cons ci ratio: 4.177965e-02	ci left: 2.139418e-03	ci right 2.230953e-03	k: 8783	n:4020000
KS ci ratio: 7.972729e-02	ci left: 5.770299e-04	ci right 6.251867e-04	k: 2415	n:4020000
MUC20   4020000 perm   7048 sec   (570 perm/sec)   p_kst 6.007463e-04   p_cons 2.184826e-03   p_joint 2.746269e-04

Joint ci ratio: 1.178552e-01	ci left: 2.582651e-04	ci right 2.908471e-04	k: 1105	n:4030000
Cons ci ratio: 4.173456e-02	ci left: 2.138775e-03	ci right 2.230181e-03	k: 8802	n:4030000
KS ci ratio: 7.967787e-02	ci left: 5.763276e-04	ci right 6.243947e-04	k: 2418	n:4030000
MUC20   4030000 perm   7080 sec   (569 perm/sec)   p_kst 6.000000e-04   p_cons 2.184119e-03   p_joint 2.741935e-04

Joint ci ratio: 1.176427e-01	ci left: 2.585867e-04	ci right 2.911464e-04	k: 1109	n:4040000
Cons ci ratio: 4.168961e-02	ci left: 2.138135e-03	ci right 2.229413e-03	k: 8821	n:4040000
KS ci ratio: 7.959566e-02	ci left: 5.761140e-04	ci right 6.241114e-04	k: 2423	n:4040000
MUC20   4040000 perm   7113 sec   (568 perm/sec)   p_kst 5.997525e-04   p_cons 2.183416e-03   p_joint 2.745050e-04

Joint ci ratio: 1.174840e-01	ci left: 2.586672e-04	ci right 2.911901e-04	k: 1112	n:4050000
Cons ci ratio: 4.164952e-02	ci left: 2.137009e-03	ci right 2.228150e-03	k: 8838	n:4050000
KS ci ratio: 7.948097e-02	ci left: 5.763855e-04	ci right 6.243331e-04	k: 2430	n:4050000
MUC20   4050000 perm   7146 sec   (567 perm/sec)   p_kst 6.000000e-04   p_cons 2.182222e-03   p_joint 2.745679e-04

Joint ci ratio: 1.173786e-01	ci left: 2.585082e-04	ci right 2.909799e-04	k: 1114	n:4060000
Cons ci ratio: 4.161191e-02	ci left: 2.135645e-03	ci right 2.226643e-03	k: 8854	n:4060000
KS ci ratio: 7.939937e-02	ci left: 5.761729e-04	ci right 6.240514e-04	k: 2435	n:4060000
MUC20   4060000 perm   7178 sec   (566 perm/sec)   p_kst 5.997537e-04   p_cons 2.180788e-03   p_joint 2.743842e-04

Joint ci ratio: 1.173260e-01	ci left: 2.581116e-04	ci right 2.905179e-04	k: 1115	n:4070000
Cons ci ratio: 4.157909e-02	ci left: 2.133802e-03	ci right 2.224648e-03	k: 8868	n:4070000
KS ci ratio: 7.935055e-02	ci left: 5.754797e-04	ci right 6.232698e-04	k: 2438	n:4070000
MUC20   4070000 perm   7211 sec   (564 perm/sec)   p_kst 5.990172e-04   p_cons 2.178870e-03   p_joint 2.739558e-04

Joint ci ratio: 1.171686e-01	ci left: 2.581927e-04	ci right 2.905627e-04	k: 1118	n:4080000
Cons ci ratio: 4.152762e-02	ci left: 2.133908e-03	ci right 2.224644e-03	k: 8890	n:4080000
KS ci ratio: 7.926935e-02	ci left: 5.752704e-04	ci right 6.229920e-04	k: 2443	n:4080000
MUC20   4080000 perm   7244 sec   (563 perm/sec)   p_kst 5.987745e-04   p_cons 2.178922e-03   p_joint 2.740196e-04

Joint ci ratio: 1.170119e-01	ci left: 2.582734e-04	ci right 2.906072e-04	k: 1121	n:4090000
Cons ci ratio: 4.149266e-02	ci left: 2.132320e-03	ci right 2.222910e-03	k: 8905	n:4090000
KS ci ratio: 7.918840e-02	ci left: 5.750622e-04	ci right 6.227155e-04	k: 2448	n:4090000
MUC20   4090000 perm   7277 sec   (562 perm/sec)   p_kst 5.985330e-04   p_cons 2.177262e-03   p_joint 2.740831e-04

Joint ci ratio: 1.167002e-01	ci left: 2.590641e-04	ci right 2.914046e-04	k: 1127	n:4100000
Cons ci ratio: 4.142524e-02	ci left: 2.134119e-03	ci right 2.224635e-03	k: 8934	n:4100000
KS ci ratio: 7.910769e-02	ci left: 5.748550e-04	ci right 6.224403e-04	k: 2453	n:4100000
MUC20   4100000 perm   7311 sec   (561 perm/sec)   p_kst 5.982927e-04   p_cons 2.179024e-03   p_joint 2.748780e-04

Joint ci ratio: 1.119376e-01	ci left: 2.815968e-04	ci right 3.152209e-04	k: 1225	n:4110000
Cons ci ratio: 4.135814e-02	ci left: 2.135910e-03	ci right 2.226351e-03	k: 8963	n:4110000
KS ci ratio: 7.894697e-02	ci left: 5.758413e-04	ci right 6.234070e-04	k: 2463	n:4110000
MUC20   4110000 perm   7344 sec   (560 perm/sec)   p_kst 5.992701e-04   p_cons 2.180779e-03   p_joint 2.980535e-04

Joint ci ratio: 1.134757e-01	ci left: 2.731293e-04	ci right 3.062205e-04	k: 1192	n:4120000
Cons ci ratio: 4.131669e-02	ci left: 2.135049e-03	ci right 2.225361e-03	k: 8981	n:4120000
KS ci ratio: 7.881910e-02	ci left: 5.763471e-04	ci right 6.238739e-04	k: 2471	n:4120000
MUC20   4120000 perm   7378 sec   (558 perm/sec)   p_kst 5.997573e-04   p_cons 2.179854e-03   p_joint 2.893204e-04

Joint ci ratio: 1.133807e-01	ci left: 2.729385e-04	ci right 3.059770e-04	k: 1194	n:4130000
Cons ci ratio: 4.127538e-02	ci left: 2.134193e-03	ci right 2.224376e-03	k: 8999	n:4130000
KS ci ratio: 7.870773e-02	ci left: 5.766131e-04	ci right 6.240916e-04	k: 2478	n:4130000
MUC20   4130000 perm   7412 sec   (557 perm/sec)   p_kst 6.000000e-04   p_cons 2.178935e-03   p_joint 2.891041e-04

Joint ci ratio: 1.131914e-01	ci left: 2.732180e-04	ci right 3.062315e-04	k: 1198	n:4140000
Cons ci ratio: 4.122502e-02	ci left: 2.134297e-03	ci right 2.224372e-03	k: 9021	n:4140000
KS ci ratio: 7.862848e-02	ci left: 5.764043e-04	ci right 6.238156e-04	k: 2483	n:4140000
MUC20   4140000 perm   7447 sec   (556 perm/sec)   p_kst 5.997585e-04   p_cons 2.178986e-03   p_joint 2.893720e-04

Joint ci ratio: 1.130971e-01	ci left: 2.730279e-04	ci right 3.059891e-04	k: 1200	n:4150000
Cons ci ratio: 4.117485e-02	ci left: 2.134401e-03	ci right 2.224368e-03	k: 9043	n:4150000
KS ci ratio: 7.851792e-02	ci left: 5.766690e-04	ci right 6.240323e-04	k: 2490	n:4150000
MUC20   4150000 perm   7484 sec   (554 perm/sec)   p_kst 6.000000e-04   p_cons 2.179036e-03   p_joint 2.891566e-04

Joint ci ratio: 1.128624e-01	ci left: 2.735396e-04	ci right 3.064894e-04	k: 1205	n:4160000
Cons ci ratio: 4.111577e-02	ci left: 2.135456e-03	ci right 2.225335e-03	k: 9069	n:4160000
KS ci ratio: 7.845497e-02	ci left: 5.762254e-04	ci right 6.235127e-04	k: 2494	n:4160000
MUC20   4160000 perm   7518 sec   (553 perm/sec)   p_kst 5.995192e-04   p_cons 2.180048e-03   p_joint 2.896635e-04

Joint ci ratio: 1.126292e-01	ci left: 2.740488e-04	ci right 3.069873e-04	k: 1210	n:4170000
Cons ci ratio: 4.105242e-02	ci left: 2.136981e-03	ci right 2.226782e-03	k: 9097	n:4170000
KS ci ratio: 7.837649e-02	ci left: 5.760191e-04	ci right 6.232400e-04	k: 2499	n:4170000
MUC20   4170000 perm   7552 sec   (552 perm/sec)   p_kst 5.992806e-04   p_cons 2.181535e-03   p_joint 2.901679e-04

Joint ci ratio: 1.125363e-01	ci left: 2.738582e-04	ci right 3.067448e-04	k: 1212	n:4180000
Cons ci ratio: 4.100513e-02	ci left: 2.136841e-03	ci right 2.226531e-03	k: 9118	n:4180000
KS ci ratio: 7.832953e-02	ci left: 5.753447e-04	ci right 6.224808e-04	k: 2502	n:4180000
MUC20   4180000 perm   7586 sec   (551 perm/sec)   p_kst 5.985646e-04   p_cons 2.181340e-03   p_joint 2.899522e-04

Joint ci ratio: 1.123974e-01	ci left: 2.739005e-04	ci right 3.067488e-04	k: 1215	n:4190000
Cons ci ratio: 4.094902e-02	ci left: 2.137646e-03	ci right 2.227245e-03	k: 9143	n:4190000
KS ci ratio: 7.820463e-02	ci left: 5.758435e-04	ci right 6.229418e-04	k: 2510	n:4190000
MUC20   4190000 perm   7620 sec   (550 perm/sec)   p_kst 5.990453e-04   p_cons 2.182100e-03   p_joint 2.899761e-04

Joint ci ratio: 1.123512e-01	ci left: 2.734797e-04	ci right 3.062633e-04	k: 1216	n:4200000
Cons ci ratio: 4.090879e-02	ci left: 2.136798e-03	ci right 2.226271e-03	k: 9161	n:4200000
KS ci ratio: 7.812690e-02	ci left: 5.756397e-04	ci right 6.226723e-04	k: 2515	n:4200000
MUC20   4200000 perm   7654 sec   (549 perm/sec)   p_kst 5.988095e-04   p_cons 2.181190e-03   p_joint 2.895238e-04

Joint ci ratio: 1.122130e-01	ci left: 2.735227e-04	ci right 3.062684e-04	k: 1219	n:4210000
Cons ci ratio: 4.086422e-02	ci left: 2.136425e-03	ci right 2.225782e-03	k: 9181	n:4210000
KS ci ratio: 7.803391e-02	ci left: 5.756697e-04	ci right 6.226463e-04	k: 2521	n:4210000
MUC20   4210000 perm   7688 sec   (548 perm/sec)   p_kst 5.988124e-04   p_cons 2.180760e-03   p_joint 2.895487e-04

Joint ci ratio: 1.120295e-01	ci left: 2.737958e-04	ci right 3.065171e-04	k: 1223	n:4220000
Cons ci ratio: 4.079759e-02	ci left: 2.138399e-03	ci right 2.227689e-03	k: 9211	n:4220000
KS ci ratio: 7.792583e-02	ci left: 5.759320e-04	ci right 6.228619e-04	k: 2528	n:4220000
MUC20   4220000 perm   7725 sec   (546 perm/sec)   p_kst 5.990521e-04   p_cons 2.182701e-03   p_joint 2.898104e-04

Joint ci ratio: 1.119381e-01	ci left: 2.736081e-04	ci right 3.062785e-04	k: 1225	n:4230000
Cons ci ratio: 4.074454e-02	ci left: 2.138959e-03	ci right 2.228155e-03	k: 9235	n:4230000
KS ci ratio: 7.777218e-02	ci left: 5.768885e-04	ci right 6.237995e-04	k: 2538	n:4230000
MUC20   4230000 perm   7760 sec   (545 perm/sec)   p_kst 6.000000e-04   p_cons 2.183215e-03   p_joint 2.895981e-04

Joint ci ratio: 1.100681e-01	ci left: 2.825936e-04	ci right 3.157366e-04	k: 1267	n:4240000
Cons ci ratio: 4.068729e-02	ci left: 2.139984e-03	ci right 2.229094e-03	k: 9261	n:4240000
KS ci ratio: 7.764993e-02	ci left: 5.773780e-04	ci right 6.242517e-04	k: 2546	n:4240000
MUC20   4240000 perm   7798 sec   (544 perm/sec)   p_kst 6.004717e-04   p_cons 2.184198e-03   p_joint 2.988208e-04

Joint ci ratio: 1.098517e-01	ci left: 2.830728e-04	ci right 3.162025e-04	k: 1272	n:4250000
Cons ci ratio: 4.064344e-02	ci left: 2.139607e-03	ci right 2.228603e-03	k: 9281	n:4250000
KS ci ratio: 7.749791e-02	ci left: 5.783268e-04	ci right 6.251815e-04	k: 2556	n:4250000
MUC20   4250000 perm   7834 sec   (543 perm/sec)   p_kst 6.014118e-04   p_cons 2.183765e-03   p_joint 2.992941e-04

Joint ci ratio: 1.096795e-01	ci left: 2.833215e-04	ci right 3.164250e-04	k: 1276	n:4260000
Cons ci ratio: 4.060848e-02	ci left: 2.138302e-03	ci right 2.227165e-03	k: 9297	n:4260000
KS ci ratio: 7.743738e-02	ci left: 5.778900e-04	ci right 6.246711e-04	k: 2560	n:4260000
MUC20   4260000 perm   7875 sec   (541 perm/sec)   p_kst 6.009390e-04   p_cons 2.182394e-03   p_joint 2.995305e-04

Joint ci ratio: 1.113043e-01	ci left: 2.742322e-04	ci right 3.067796e-04	k: 1239	n:4270000
Cons ci ratio: 4.056925e-02	ci left: 2.137467e-03	ci right 2.226208e-03	k: 9315	n:4270000
KS ci ratio: 7.737699e-02	ci left: 5.774553e-04	ci right 6.241630e-04	k: 2564	n:4270000
MUC20   4270000 perm   7915 sec   (540 perm/sec)   p_kst 6.004684e-04   p_cons 2.181499e-03   p_joint 2.901639e-04

Joint ci ratio: 1.112147e-01	ci left: 2.740458e-04	ci right 3.065431e-04	k: 1241	n:4280000
Cons ci ratio: 4.053013e-02	ci left: 2.136636e-03	ci right 2.225255e-03	k: 9333	n:4280000
KS ci ratio: 7.727162e-02	ci left: 5.777100e-04	ci right 6.243718e-04	k: 2571	n:4280000
MUC20   4280000 perm   7957 sec   (538 perm/sec)   p_kst 6.007009e-04   p_cons 2.180607e-03   p_joint 2.899533e-04

Joint ci ratio: 1.111700e-01	ci left: 2.736336e-04	ci right 3.060681e-04	k: 1242	n:4290000
Cons ci ratio: 4.048679e-02	ci left: 2.136270e-03	ci right 2.224777e-03	k: 9353	n:4290000
KS ci ratio: 7.722662e-02	ci left: 5.770491e-04	ci right 6.236292e-04	k: 2574	n:4290000
MUC20   4290000 perm   7994 sec   (537 perm/sec)   p_kst 6.000000e-04   p_cons 2.180186e-03   p_joint 2.895105e-04

Joint ci ratio: 1.110807e-01	ci left: 2.734494e-04	ci right 3.058344e-04	k: 1244	n:4300000
Cons ci ratio: 4.043278e-02	ci left: 2.137057e-03	ci right 2.225476e-03	k: 9378	n:4300000
KS ci ratio: 7.707706e-02	ci left: 5.779879e-04	ci right 6.245494e-04	k: 2584	n:4300000
MUC20   4300000 perm   8032 sec   (535 perm/sec)   p_kst 6.009302e-04   p_cons 2.180930e-03   p_joint 2.893023e-04

Joint ci ratio: 1.109916e-01	ci left: 2.732661e-04	ci right 3.056017e-04	k: 1246	n:4310000
Cons ci ratio: 4.037468e-02	ci left: 2.138300e-03	ci right 2.226640e-03	k: 9405	n:4310000
KS ci ratio: 7.700264e-02	ci left: 5.777846e-04	ci right 6.242827e-04	k: 2589	n:4310000
MUC20   4310000 perm   8068 sec   (534 perm/sec)   p_kst 6.006961e-04   p_cons 2.182135e-03   p_joint 2.890951e-04

Joint ci ratio: 1.109027e-01	ci left: 2.730837e-04	ci right 3.053701e-04	k: 1248	n:4320000
Cons ci ratio: 4.032755e-02	ci left: 2.138392e-03	ci right 2.226630e-03	k: 9427	n:4320000
KS ci ratio: 7.695811e-02	ci left: 5.771282e-04	ci right 6.235455e-04	k: 2592	n:4320000
MUC20   4320000 perm   8107 sec   (533 perm/sec)   p_kst 6.000000e-04   p_cons 2.182176e-03   p_joint 2.888889e-04

Joint ci ratio: 1.133341e-01	ci left: 2.605559e-04	ci right 2.920817e-04	k: 1195	n:4330000
Cons ci ratio: 4.028058e-02	ci left: 2.138483e-03	ci right 2.226619e-03	k: 9449	n:4330000
KS ci ratio: 7.679535e-02	ci left: 5.782869e-04	ci right 6.246946e-04	k: 2603	n:4330000
MUC20   4330000 perm   8146 sec   (532 perm/sec)   p_kst 6.011547e-04   p_cons 2.182217e-03   p_joint 2.759815e-04

Joint ci ratio: 1.132867e-01	ci left: 2.601794e-04	ci right 2.916457e-04	k: 1196	n:4340000
Cons ci ratio: 4.024868e-02	ci left: 2.136977e-03	ci right 2.224980e-03	k: 9464	n:4340000
KS ci ratio: 7.670702e-02	ci left: 5.783104e-04	ci right 6.246642e-04	k: 2609	n:4340000
MUC20   4340000 perm   8184 sec   (530 perm/sec)   p_kst 6.011521e-04   p_cons 2.180645e-03   p_joint 2.755760e-04

Joint ci ratio: 1.131450e-01	ci left: 2.602514e-04	ci right 2.916844e-04	k: 1199	n:4350000
Cons ci ratio: 4.020198e-02	ci left: 2.137071e-03	ci right 2.224973e-03	k: 9486	n:4350000
KS ci ratio: 7.656046e-02	ci left: 5.792358e-04	ci right 6.255711e-04	k: 2619	n:4350000
MUC20   4350000 perm   8221 sec   (529 perm/sec)   p_kst 6.020690e-04   p_cons 2.180690e-03   p_joint 2.756322e-04

Joint ci ratio: 1.130979e-01	ci left: 2.598774e-04	ci right 2.912512e-04	k: 1200	n:4360000
Cons ci ratio: 4.016603e-02	ci left: 2.136029e-03	ci right 2.223808e-03	k: 9503	n:4360000
KS ci ratio: 7.647295e-02	ci left: 5.792570e-04	ci right 6.255388e-04	k: 2625	n:4360000
MUC20   4360000 perm   8256 sec   (528 perm/sec)   p_kst 6.020642e-04   p_cons 2.179587e-03   p_joint 2.752294e-04

Joint ci ratio: 1.129569e-01	ci left: 2.599498e-04	ci right 2.912907e-04	k: 1203	n:4370000
Cons ci ratio: 4.010908e-02	ci left: 2.137258e-03	ci right 2.224960e-03	k: 9530	n:4370000
KS ci ratio: 7.637122e-02	ci left: 5.795027e-04	ci right 6.257398e-04	k: 2632	n:4370000
MUC20   4370000 perm   8291 sec   (527 perm/sec)   p_kst 6.022883e-04   p_cons 2.180778e-03   p_joint 2.752860e-04

Joint ci ratio: 1.128165e-01	ci left: 2.600219e-04	ci right 2.913299e-04	k: 1206	n:4380000
Cons ci ratio: 4.006286e-02	ci left: 2.137351e-03	ci right 2.224953e-03	k: 9552	n:4380000
KS ci ratio: 7.628435e-02	ci left: 5.795234e-04	ci right 6.257072e-04	k: 2638	n:4380000
MUC20   4380000 perm   8327 sec   (526 perm/sec)   p_kst 6.022831e-04   p_cons 2.180822e-03   p_joint 2.753425e-04

Joint ci ratio: 1.127698e-01	ci left: 2.596510e-04	ci right 2.909005e-04	k: 1207	n:4390000
Cons ci ratio: 4.003358e-02	ci left: 2.135639e-03	ci right 2.223106e-03	k: 9566	n:4390000
KS ci ratio: 7.621219e-02	ci left: 5.793205e-04	ci right 6.254425e-04	k: 2643	n:4390000
MUC20   4390000 perm   8365 sec   (525 perm/sec)   p_kst 6.020501e-04   p_cons 2.179043e-03   p_joint 2.749431e-04

Joint ci ratio: 1.127232e-01	ci left: 2.592817e-04	ci right 2.904730e-04	k: 1208	n:4400000
Cons ci ratio: 3.999599e-02	ci left: 2.134835e-03	ci right 2.222186e-03	k: 9584	n:4400000
KS ci ratio: 7.615463e-02	ci left: 5.788957e-04	ci right 6.249475e-04	k: 2647	n:4400000
MUC20   4400000 perm   8401 sec   (524 perm/sec)   p_kst 6.015909e-04   p_cons 2.178182e-03   p_joint 2.745455e-04

Joint ci ratio: 1.126766e-01	ci left: 2.589141e-04	ci right 2.900475e-04	k: 1209	n:4410000
Cons ci ratio: 3.995225e-02	ci left: 2.134709e-03	ci right 2.221956e-03	k: 9605	n:4410000
KS ci ratio: 7.599690e-02	ci left: 5.800299e-04	ci right 6.260721e-04	k: 2658	n:4410000
MUC20   4410000 perm   8436 sec   (523 perm/sec)   p_kst 6.027211e-04   p_cons 2.178005e-03   p_joint 2.741497e-04

Joint ci ratio: 1.125372e-01	ci left: 2.589880e-04	ci right 2.900891e-04	k: 1212	n:4420000
Cons ci ratio: 3.989412e-02	ci left: 2.136151e-03	ci right 2.223327e-03	k: 9633	n:4420000
KS ci ratio: 7.593982e-02	ci left: 5.796054e-04	ci right 6.255778e-04	k: 2662	n:4420000
MUC20   4420000 perm   8471 sec   (522 perm/sec)   p_kst 6.022624e-04   p_cons 2.179412e-03   p_joint 2.742081e-04

Joint ci ratio: 1.123983e-01	ci left: 2.590615e-04	ci right 2.901305e-04	k: 1215	n:4430000
Cons ci ratio: 3.984865e-02	ci left: 2.136245e-03	ci right 2.223324e-03	k: 9655	n:4430000
KS ci ratio: 7.585442e-02	ci left: 5.796257e-04	ci right 6.255458e-04	k: 2668	n:4430000
MUC20   4430000 perm   8508 sec   (521 perm/sec)   p_kst 6.022573e-04   p_cons 2.179458e-03   p_joint 2.742664e-04

Joint ci ratio: 1.123060e-01	ci left: 2.589158e-04	ci right 2.899402e-04	k: 1217	n:4440000
Cons ci ratio: 3.980539e-02	ci left: 2.136117e-03	ci right 2.223093e-03	k: 9676	n:4440000
KS ci ratio: 7.576930e-02	ci left: 5.796460e-04	ci right 6.255139e-04	k: 2674	n:4440000
MUC20   4440000 perm   8544 sec   (520 perm/sec)   p_kst 6.022523e-04   p_cons 2.179279e-03   p_joint 2.740991e-04

Joint ci ratio: 1.121679e-01	ci left: 2.589892e-04	ci right 2.899817e-04	k: 1220	n:4450000
Cons ci ratio: 3.974379e-02	ci left: 2.137991e-03	ci right 2.224906e-03	k: 9706	n:4450000
KS ci ratio: 7.567035e-02	ci left: 5.798866e-04	ci right 6.257110e-04	k: 2681	n:4450000
MUC20   4450000 perm   8580 sec   (519 perm/sec)   p_kst 6.024719e-04   p_cons 2.181124e-03   p_joint 2.741573e-04

Joint ci ratio: 1.121220e-01	ci left: 2.586265e-04	ci right 2.895620e-04	k: 1221	n:4460000
Cons ci ratio: 3.969883e-02	ci left: 2.138081e-03	ci right 2.224899e-03	k: 9728	n:4460000
KS ci ratio: 7.562809e-02	ci left: 5.792464e-04	ci right 6.249935e-04	k: 2684	n:4460000
MUC20   4460000 perm   8617 sec   (518 perm/sec)   p_kst 6.017937e-04   p_cons 2.181166e-03   p_joint 2.737668e-04

Joint ci ratio: 1.120304e-01	ci left: 2.584828e-04	ci right 2.893742e-04	k: 1223	n:4470000
Cons ci ratio: 3.966625e-02	ci left: 2.136842e-03	ci right 2.223537e-03	k: 9744	n:4470000
KS ci ratio: 7.554373e-02	ci left: 5.792674e-04	ci right 6.249629e-04	k: 2690	n:4470000
MUC20   4470000 perm   8654 sec   (517 perm/sec)   p_kst 6.017897e-04   p_cons 2.179866e-03   p_joint 2.736018e-04

Joint ci ratio: 1.118022e-01	ci left: 2.589906e-04	ci right 2.898756e-04	k: 1228	n:4480000
Cons ci ratio: 3.961546e-02	ci left: 2.137597e-03	ci right 2.224209e-03	k: 9769	n:4480000
KS ci ratio: 7.547365e-02	ci left: 5.790694e-04	ci right 6.247051e-04	k: 2695	n:4480000
MUC20   4480000 perm   8691 sec   (515 perm/sec)   p_kst 6.015625e-04   p_cons 2.180580e-03   p_joint 2.741071e-04

Joint ci ratio: 1.115755e-01	ci left: 2.594963e-04	ci right 2.903747e-04	k: 1233	n:4490000
Cons ci ratio: 3.956688e-02	ci left: 2.138129e-03	ci right 2.224654e-03	k: 9793	n:4490000
KS ci ratio: 7.537585e-02	ci left: 5.793093e-04	ci right 6.249021e-04	k: 2702	n:4490000
MUC20   4490000 perm   8729 sec   (514 perm/sec)   p_kst 6.017817e-04   p_cons 2.181069e-03   p_joint 2.746102e-04

Joint ci ratio: 1.114401e-01	ci left: 2.595677e-04	ci right 2.904146e-04	k: 1236	n:4500000
Cons ci ratio: 3.951445e-02	ci left: 2.139098e-03	ci right 2.225545e-03	k: 9819	n:4500000
KS ci ratio: 7.532016e-02	ci left: 5.788941e-04	ci right 6.244191e-04	k: 2706	n:4500000
MUC20   4500000 perm   8767 sec   (513 perm/sec)   p_kst 6.013333e-04   p_cons 2.182000e-03   p_joint 2.746667e-04

Joint ci ratio: 1.086638e-01	ci left: 2.727924e-04	ci right 3.043517e-04	k: 1300	n:4510000
Cons ci ratio: 3.946222e-02	ci left: 2.140063e-03	ci right 2.226432e-03	k: 9845	n:4510000
KS ci ratio: 7.522295e-02	ci left: 5.791334e-04	ci right 6.246159e-04	k: 2713	n:4510000
MUC20   4510000 perm   8805 sec   (512 perm/sec)   p_kst 6.015521e-04   p_cons 2.182927e-03   p_joint 2.882483e-04

Joint ci ratio: 1.085803e-01	ci left: 2.726193e-04	ci right 3.041328e-04	k: 1302	n:4520000
Cons ci ratio: 3.942421e-02	ci left: 2.139490e-03	ci right 2.225751e-03	k: 9864	n:4520000
KS ci ratio: 7.511232e-02	ci left: 5.795888e-04	ci right 6.250372e-04	k: 2721	n:4520000
MUC20   4520000 perm   8843 sec   (511 perm/sec)   p_kst 6.019912e-04   p_cons 2.182301e-03   p_joint 2.880531e-04

Joint ci ratio: 1.083312e-01	ci left: 2.733061e-04	ci right 3.048218e-04	k: 1308	n:4530000
Cons ci ratio: 3.937633e-02	ci left: 2.140013e-03	ci right 2.226188e-03	k: 9888	n:4530000
KS ci ratio: 7.508477e-02	ci left: 5.787426e-04	ci right 6.241072e-04	k: 2723	n:4530000
MUC20   4530000 perm   8883 sec   (510 perm/sec)   p_kst 6.011038e-04   p_cons 2.182781e-03   p_joint 2.887417e-04

Joint ci ratio: 1.082898e-01	ci left: 2.729184e-04	ci right 3.043767e-04	k: 1309	n:4540000
Cons ci ratio: 3.933062e-02	ci left: 2.140316e-03	ci right 2.226400e-03	k: 9911	n:4540000
KS ci ratio: 7.505725e-02	ci left: 5.779001e-04	ci right 6.231813e-04	k: 2725	n:4540000
MUC20   4540000 perm   8919 sec   (509 perm/sec)   p_kst 6.002203e-04   p_cons 2.183040e-03   p_joint 2.883260e-04

Joint ci ratio: 1.081249e-01	ci left: 2.731739e-04	ci right 3.046106e-04	k: 1313	n:4550000
Cons ci ratio: 3.929101e-02	ci left: 2.139964e-03	ci right 2.225946e-03	k: 9931	n:4550000
KS ci ratio: 7.490623e-02	ci left: 5.790022e-04	ci right 6.242746e-04	k: 2736	n:4550000
MUC20   4550000 perm   8958 sec   (508 perm/sec)   p_kst 6.013187e-04   p_cons 2.182637e-03   p_joint 2.885714e-04

Joint ci ratio: 1.079197e-01	ci left: 2.736417e-04	ci right 3.050687e-04	k: 1318	n:4560000
Cons ci ratio: 3.924164e-02	ci left: 2.140700e-03	ci right 2.226601e-03	k: 9956	n:4560000
KS ci ratio: 7.479698e-02	ci left: 5.794540e-04	ci right 6.246928e-04	k: 2744	n:4560000
MUC20   4560000 perm   8997 sec   (507 perm/sec)   p_kst 6.017544e-04   p_cons 2.183333e-03   p_joint 2.890351e-04

Joint ci ratio: 1.078380e-01	ci left: 2.734688e-04	ci right 3.048506e-04	k: 1320	n:4570000
Cons ci ratio: 3.918655e-02	ci left: 2.142083e-03	ci right 2.227916e-03	k: 9984	n:4570000
KS ci ratio: 7.470179e-02	ci left: 5.796892e-04	ci right 6.248862e-04	k: 2751	n:4570000
MUC20   4570000 perm   9035 sec   (506 perm/sec)   p_kst 6.019694e-04   p_cons 2.184683e-03   p_joint 2.888403e-04

Joint ci ratio: 1.077158e-01	ci left: 2.735090e-04	ci right 3.048577e-04	k: 1323	n:4580000
Cons ci ratio: 3.913365e-02	ci left: 2.143243e-03	ci right 2.229004e-03	k: 10011	n:4580000
KS ci ratio: 7.457991e-02	ci left: 5.803519e-04	ci right 6.255235e-04	k: 2760	n:4580000
MUC20   4580000 perm   9073 sec   (505 perm/sec)   p_kst 6.026201e-04   p_cons 2.185808e-03   p_joint 2.888646e-04

Joint ci ratio: 1.075939e-01	ci left: 2.735492e-04	ci right 3.048647e-04	k: 1326	n:4590000
Cons ci ratio: 3.909463e-02	ci left: 2.142888e-03	ci right 2.228548e-03	k: 10031	n:4590000
KS ci ratio: 7.447208e-02	ci left: 5.807979e-04	ci right 6.259361e-04	k: 2768	n:4590000
MUC20   4590000 perm   9112 sec   (504 perm/sec)   p_kst 6.030501e-04   p_cons 2.185403e-03   p_joint 2.888889e-04

Joint ci ratio: 1.074725e-01	ci left: 2.735891e-04	ci right 3.048716e-04	k: 1329	n:4600000
Cons ci ratio: 3.906547e-02	ci left: 2.141459e-03	ci right 2.226996e-03	k: 10046	n:4600000
KS ci ratio: 7.440495e-02	ci left: 5.806021e-04	ci right 6.256826e-04	k: 2773	n:4600000
MUC20   4600000 perm   9151 sec   (503 perm/sec)   p_kst 6.028261e-04   p_cons 2.183913e-03   p_joint 2.889130e-04

Joint ci ratio: 1.072710e-01	ci left: 2.740511e-04	ci right 3.053240e-04	k: 1334	n:4610000
Cons ci ratio: 3.903054e-02	ci left: 2.140680e-03	ci right 2.226108e-03	k: 10064	n:4610000
KS ci ratio: 7.431124e-02	ci left: 5.808328e-04	ci right 6.258720e-04	k: 2780	n:4610000
MUC20   4610000 perm   9191 sec   (502 perm/sec)   p_kst 6.030369e-04   p_cons 2.183080e-03   p_joint 2.893709e-04

Joint ci ratio: 1.071908e-01	ci left: 2.738792e-04	ci right 3.051076e-04	k: 1336	n:4620000
Cons ci ratio: 3.898020e-02	ci left: 2.141619e-03	ci right 2.226972e-03	k: 10090	n:4620000
KS ci ratio: 7.424453e-02	ci left: 5.806378e-04	ci right 6.256197e-04	k: 2785	n:4620000
MUC20   4620000 perm   9229 sec   (501 perm/sec)   p_kst 6.028139e-04   p_cons 2.183983e-03   p_joint 2.891775e-04

Joint ci ratio: 1.069510e-01	ci left: 2.745489e-04	ci right 3.057792e-04	k: 1342	n:4630000
Cons ci ratio: 3.893199e-02	ci left: 2.142341e-03	ci right 2.227614e-03	k: 10115	n:4630000
KS ci ratio: 7.420462e-02	ci left: 5.800196e-04	ci right 6.249284e-04	k: 2788	n:4630000
MUC20   4630000 perm   9269 sec   (500 perm/sec)   p_kst 6.021598e-04   p_cons 2.184665e-03   p_joint 2.898488e-04

Joint ci ratio: 1.067921e-01	ci left: 2.747962e-04	ci right 3.060053e-04	k: 1346	n:4640000
Cons ci ratio: 3.889550e-02	ci left: 2.141779e-03	ci right 2.226948e-03	k: 10134	n:4640000
KS ci ratio: 7.404544e-02	ci left: 5.813078e-04	ci right 6.262157e-04	k: 2800	n:4640000
MUC20   4640000 perm   9308 sec   (498 perm/sec)   p_kst 6.034483e-04   p_cons 2.184052e-03   p_joint 2.900862e-04

Joint ci ratio: 1.066734e-01	ci left: 2.748332e-04	ci right 3.060096e-04	k: 1349	n:4650000
Cons ci ratio: 3.885527e-02	ci left: 2.141645e-03	ci right 2.226719e-03	k: 10155	n:4650000
KS ci ratio: 7.399265e-02	ci left: 5.809020e-04	ci right 6.257451e-04	k: 2804	n:4650000
MUC20   4650000 perm   9346 sec   (498 perm/sec)   p_kst 6.030108e-04   p_cons 2.183871e-03   p_joint 2.901075e-04

Joint ci ratio: 1.065157e-01	ci left: 2.750789e-04	ci right 3.062342e-04	k: 1353	n:4660000
Cons ci ratio: 3.883620e-02	ci left: 2.139174e-03	ci right 2.224107e-03	k: 10165	n:4660000
KS ci ratio: 7.393996e-02	ci left: 5.804979e-04	ci right 6.252766e-04	k: 2808	n:4660000
MUC20   4660000 perm   9383 sec   (497 perm/sec)   p_kst 6.025751e-04   p_cons 2.181330e-03   p_joint 2.903433e-04

Joint ci ratio: 1.063587e-01	ci left: 2.753236e-04	ci right 3.064578e-04	k: 1357	n:4670000
Cons ci ratio: 3.878662e-02	ci left: 2.140107e-03	ci right 2.224966e-03	k: 10191	n:4670000
KS ci ratio: 7.383488e-02	ci left: 5.809363e-04	ci right 6.256824e-04	k: 2816	n:4670000
MUC20   4670000 perm   9421 sec   (496 perm/sec)   p_kst 6.029979e-04   p_cons 2.182227e-03   p_joint 2.905782e-04

Joint ci ratio: 1.061634e-01	ci left: 2.757753e-04	ci right 3.068997e-04	k: 1362	n:4680000
Cons ci ratio: 3.873722e-02	ci left: 2.141036e-03	ci right 2.225821e-03	k: 10217	n:4680000
KS ci ratio: 7.376945e-02	ci left: 5.807437e-04	ci right 6.254335e-04	k: 2821	n:4680000
MUC20   4680000 perm   9463 sec   (495 perm/sec)   p_kst 6.027778e-04   p_cons 2.183120e-03   p_joint 2.910256e-04

Joint ci ratio: 1.059305e-01	ci left: 2.764327e-04	ci right 3.075586e-04	k: 1368	n:4690000
Cons ci ratio: 3.869180e-02	ci left: 2.141538e-03	ci right 2.226242e-03	k: 10241	n:4690000
KS ci ratio: 7.366509e-02	ci left: 5.811797e-04	ci right 6.258372e-04	k: 2829	n:4690000
MUC20   4690000 perm   9500 sec   (494 perm/sec)   p_kst 6.031983e-04   p_cons 2.183582e-03   p_joint 2.916844e-04

Joint ci ratio: 1.058532e-01	ci left: 2.762588e-04	ci right 3.073410e-04	k: 1370	n:4700000
Cons ci ratio: 3.864465e-02	ci left: 2.142250e-03	ci right 2.226876e-03	k: 10266	n:4700000
KS ci ratio: 7.356118e-02	ci left: 5.816140e-04	ci right 6.262390e-04	k: 2837	n:4700000
MUC20   4700000 perm   9541 sec   (493 perm/sec)   p_kst 6.036170e-04   p_cons 2.184255e-03   p_joint 2.914894e-04

Joint ci ratio: 1.057376e-01	ci left: 2.762924e-04	ci right 3.073422e-04	k: 1373	n:4710000
Cons ci ratio: 3.861836e-02	ci left: 2.140645e-03	ci right 2.225149e-03	k: 10280	n:4710000
KS ci ratio: 7.348354e-02	ci left: 5.816296e-04	ci right 6.262068e-04	k: 2843	n:4710000
MUC20   4710000 perm   9582 sec   (492 perm/sec)   p_kst 6.036093e-04   p_cons 2.182590e-03   p_joint 2.915074e-04

Joint ci ratio: 1.056607e-01	ci left: 2.761195e-04	ci right 3.071260e-04	k: 1375	n:4720000
Cons ci ratio: 3.858649e-02	ci left: 2.139677e-03	ci right 2.224071e-03	k: 10297	n:4720000
KS ci ratio: 7.343193e-02	ci left: 5.812292e-04	ci right 6.257431e-04	k: 2847	n:4720000
MUC20   4720000 perm   9620 sec   (491 perm/sec)   p_kst 6.031780e-04   p_cons 2.181568e-03   p_joint 2.913136e-04

Joint ci ratio: 1.055074e-01	ci left: 2.763591e-04	ci right 3.073447e-04	k: 1379	n:4730000
Cons ci ratio: 3.852664e-02	ci left: 2.141853e-03	ci right 2.226200e-03	k: 10329	n:4730000
KS ci ratio: 7.334185e-02	ci left: 5.814531e-04	ci right 6.259272e-04	k: 2854	n:4730000
MUC20   4730000 perm   9658 sec   (490 perm/sec)   p_kst 6.033827e-04   p_cons 2.183721e-03   p_joint 2.915433e-04

Joint ci ratio: 1.054693e-01	ci left: 2.759815e-04	ci right 3.069128e-04	k: 1380	n:4740000
Cons ci ratio: 3.849499e-02	ci left: 2.140886e-03	ci right 2.225124e-03	k: 10346	n:4740000
KS ci ratio: 7.327772e-02	ci left: 5.812620e-04	ci right 6.256809e-04	k: 2859	n:4740000
MUC20   4740000 perm   9699 sec   (489 perm/sec)   p_kst 6.031646e-04   p_cons 2.182700e-03   p_joint 2.911392e-04

Joint ci ratio: 1.053930e-01	ci left: 2.758104e-04	ci right 3.066988e-04	k: 1382	n:4750000
Cons ci ratio: 3.844670e-02	ci left: 2.141800e-03	ci right 2.225966e-03	k: 10372	n:4750000
KS ci ratio: 7.322655e-02	ci left: 5.808649e-04	ci right 6.252212e-04	k: 2863	n:4750000
MUC20   4750000 perm   9737 sec   (488 perm/sec)   p_kst 6.027368e-04   p_cons 2.183579e-03   p_joint 2.909474e-04

Joint ci ratio: 1.050517e-01	ci left: 2.770720e-04	ci right 3.079950e-04	k: 1391	n:4760000
Cons ci ratio: 3.839859e-02	ci left: 2.142711e-03	ci right 2.226804e-03	k: 10398	n:4760000
KS ci ratio: 7.312447e-02	ci left: 5.812946e-04	ci right 6.256191e-04	k: 2871	n:4760000
MUC20   4760000 perm   9777 sec   (487 perm/sec)   p_kst 6.031513e-04   p_cons 2.184454e-03   p_joint 2.922269e-04

Joint ci ratio: 1.048259e-01	ci left: 2.777160e-04	ci right 3.086402e-04	k: 1397	n:4770000
Cons ci ratio: 3.834698e-02	ci left: 2.144032e-03	ci right 2.228062e-03	k: 10426	n:4770000
KS ci ratio: 7.302283e-02	ci left: 5.817224e-04	ci right 6.260153e-04	k: 2879	n:4770000
MUC20   4770000 perm   9815 sec   (486 perm/sec)   p_kst 6.035639e-04   p_cons 2.185744e-03   p_joint 2.928721e-04

Joint ci ratio: 1.047137e-01	ci left: 2.777461e-04	ci right 3.086385e-04	k: 1400	n:4780000
Cons ci ratio: 3.830291e-02	ci left: 2.144520e-03	ci right 2.228470e-03	k: 10450	n:4780000
KS ci ratio: 7.294688e-02	ci left: 5.817377e-04	ci right 6.259838e-04	k: 2885	n:4780000
MUC20   4780000 perm   9858 sec   (485 perm/sec)   p_kst 6.035565e-04   p_cons 2.186192e-03   p_joint 2.928870e-04

Joint ci ratio: 1.046017e-01	ci left: 2.777762e-04	ci right 3.086369e-04	k: 1403	n:4790000
Cons ci ratio: 3.826449e-02	ci left: 2.144385e-03	ci right 2.228244e-03	k: 10471	n:4790000
KS ci ratio: 7.280822e-02	ci left: 5.827779e-04	ci right 6.270152e-04	k: 2896	n:4790000
MUC20   4790000 perm   9898 sec   (484 perm/sec)   p_kst 6.045929e-04   p_cons 2.186013e-03   p_joint 2.929019e-04

Joint ci ratio: 1.044159e-01	ci left: 2.782119e-04	ci right 3.090628e-04	k: 1408	n:4800000
Cons ci ratio: 3.821524e-02	ci left: 2.145489e-03	ci right 2.229280e-03	k: 10498	n:4800000
KS ci ratio: 7.270788e-02	ci left: 5.832001e-04	ci right 6.274059e-04	k: 2904	n:4800000
MUC20   4800000 perm   9939 sec   (483 perm/sec)   p_kst 6.050000e-04   p_cons 2.187083e-03   p_joint 2.933333e-04

Joint ci ratio: 1.044160e-01	ci left: 2.776335e-04	ci right 3.084202e-04	k: 1408	n:4810000
Cons ci ratio: 3.818436e-02	ci left: 2.144529e-03	ci right 2.228214e-03	k: 10515	n:4810000
KS ci ratio: 7.267039e-02	ci left: 5.826000e-04	ci right 6.267366e-04	k: 2907	n:4810000
MUC20   4810000 perm   9978 sec   (482 perm/sec)   p_kst 6.043659e-04   p_cons 2.186071e-03   p_joint 2.927235e-04

Joint ci ratio: 1.042681e-01	ci left: 2.778657e-04	ci right 3.086319e-04	k: 1412	n:4820000
Cons ci ratio: 3.814448e-02	ci left: 2.144600e-03	ci right 2.228199e-03	k: 10537	n:4820000
KS ci ratio: 7.260801e-02	ci left: 5.824098e-04	ci right 6.264925e-04	k: 2912	n:4820000
MUC20   4820000 perm   10017 sec   (481 perm/sec)   p_kst 6.041494e-04   p_cons 2.186100e-03   p_joint 2.929461e-04

Joint ci ratio: 1.042312e-01	ci left: 2.774921e-04	ci right 3.082053e-04	k: 1413	n:4830000
Cons ci ratio: 3.811196e-02	ci left: 2.143851e-03	ci right 2.227348e-03	k: 10555	n:4830000
KS ci ratio: 7.255822e-02	ci left: 5.820171e-04	ci right 6.260386e-04	k: 2916	n:4830000
MUC20   4830000 perm   10057 sec   (480 perm/sec)   p_kst 6.037267e-04   p_cons 2.185300e-03   p_joint 2.925466e-04

Joint ci ratio: 1.041208e-01	ci left: 2.775224e-04	ci right 3.082045e-04	k: 1416	n:4840000
Cons ci ratio: 3.805788e-02	ci left: 2.145561e-03	ci right 2.229003e-03	k: 10585	n:4840000
KS ci ratio: 7.247131e-02	ci left: 5.822346e-04	ci right 6.262176e-04	k: 2923	n:4840000
MUC20   4840000 perm   10107 sec   (479 perm/sec)   p_kst 6.039256e-04   p_cons 2.186983e-03   p_joint 2.925620e-04

Joint ci ratio: 1.040841e-01	ci left: 2.771510e-04	ci right 3.077806e-04	k: 1417	n:4850000
Cons ci ratio: 3.802558e-02	ci left: 2.144813e-03	ci right 2.228154e-03	k: 10603	n:4850000
KS ci ratio: 7.243418e-02	ci left: 5.816415e-04	ci right 6.255562e-04	k: 2926	n:4850000
MUC20   4850000 perm   10147 sec   (478 perm/sec)   p_kst 6.032990e-04   p_cons 2.186186e-03   p_joint 2.921649e-04

Joint ci ratio: 1.038646e-01	ci left: 2.777832e-04	ci right 3.084140e-04	k: 1423	n:4860000
Cons ci ratio: 3.798262e-02	ci left: 2.145291e-03	ci right 2.228555e-03	k: 10627	n:4860000
KS ci ratio: 7.234772e-02	ci left: 5.818590e-04	ci right 6.257355e-04	k: 2933	n:4860000
MUC20   4860000 perm   10189 sec   (477 perm/sec)   p_kst 6.034979e-04   p_cons 2.186626e-03   p_joint 2.927984e-04

Joint ci ratio: 1.038281e-01	ci left: 2.774129e-04	ci right 3.079914e-04	k: 1424	n:4870000
Cons ci ratio: 3.793087e-02	ci left: 2.146785e-03	ci right 2.229990e-03	k: 10656	n:4870000
KS ci ratio: 7.228616e-02	ci left: 5.816723e-04	ci right 6.254958e-04	k: 2938	n:4870000
MUC20   4870000 perm   10233 sec   (476 perm/sec)   p_kst 6.032854e-04   p_cons 2.188090e-03   p_joint 2.924025e-04

Joint ci ratio: 1.037190e-01	ci left: 2.774432e-04	ci right 3.079909e-04	k: 1427	n:4880000
Cons ci ratio: 3.789712e-02	ci left: 2.146242e-03	ci right 2.229350e-03	k: 10675	n:4880000
KS ci ratio: 7.226161e-02	ci left: 5.808828e-04	ci right 6.246313e-04	k: 2940	n:4880000
MUC20   4880000 perm   10278 sec   (475 perm/sec)   p_kst 6.024590e-04   p_cons 2.187500e-03   p_joint 2.924180e-04

Joint ci ratio: 1.035018e-01	ci left: 2.780710e-04	ci right 3.086199e-04	k: 1433	n:4890000
Cons ci ratio: 3.785813e-02	ci left: 2.146309e-03	ci right 2.229333e-03	k: 10697	n:4890000
KS ci ratio: 7.215127e-02	ci left: 5.815021e-04	ci right 6.252277e-04	k: 2949	n:4890000
MUC20   4890000 perm   10320 sec   (474 perm/sec)   p_kst 6.030675e-04   p_cons 2.187526e-03   p_joint 2.930470e-04

Joint ci ratio: 1.032500e-01	ci left: 2.788952e-04	ci right 3.094555e-04	k: 1440	n:4900000
Cons ci ratio: 3.780689e-02	ci left: 2.147792e-03	ci right 2.230758e-03	k: 10726	n:4900000
KS ci ratio: 7.205362e-02	ci left: 5.819186e-04	ci right 6.256138e-04	k: 2957	n:4900000
MUC20   4900000 perm   10360 sec   (473 perm/sec)   p_kst 6.034694e-04   p_cons 2.188980e-03   p_joint 2.938776e-04

Joint ci ratio: 1.031785e-01	ci left: 2.787240e-04	ci right 3.092431e-04	k: 1442	n:4910000
Cons ci ratio: 3.777699e-02	ci left: 2.146847e-03	ci right 2.229709e-03	k: 10743	n:4910000
KS ci ratio: 7.195637e-02	ci left: 5.823334e-04	ci right 6.259983e-04	k: 2965	n:4910000
MUC20   4910000 perm   10401 sec   (472 perm/sec)   p_kst 6.038697e-04   p_cons 2.187984e-03   p_joint 2.936864e-04

Joint ci ratio: 1.030714e-01	ci left: 2.787515e-04	ci right 3.092400e-04	k: 1445	n:4920000
Cons ci ratio: 3.772959e-02	ci left: 2.147919e-03	ci right 2.230717e-03	k: 10770	n:4920000
KS ci ratio: 7.187160e-02	ci left: 5.825470e-04	ci right 6.261743e-04	k: 2972	n:4920000
MUC20   4920000 perm   10445 sec   (471 perm/sec)   p_kst 6.040650e-04   p_cons 2.189024e-03   p_joint 2.936992e-04

Joint ci ratio: 1.029646e-01	ci left: 2.787789e-04	ci right 3.092370e-04	k: 1448	n:4930000
Cons ci ratio: 3.769287e-02	ci left: 2.147782e-03	ci right 2.230492e-03	k: 10791	n:4930000
KS ci ratio: 7.182331e-02	ci left: 5.821622e-04	ci right 6.257301e-04	k: 2976	n:4930000
MUC20   4930000 perm   10488 sec   (470 perm/sec)   p_kst 6.036511e-04   p_cons 2.188844e-03   p_joint 2.937120e-04

Joint ci ratio: 1.028228e-01	ci left: 2.790035e-04	ci right 3.094415e-04	k: 1452	n:4940000
Cons ci ratio: 3.765625e-02	ci left: 2.147645e-03	ci right 2.230268e-03	k: 10812	n:4940000
KS ci ratio: 7.176308e-02	ci left: 5.819777e-04	ci right 6.254937e-04	k: 2981	n:4940000
MUC20   4940000 perm   10530 sec   (469 perm/sec)   p_kst 6.034413e-04   p_cons 2.188664e-03   p_joint 2.939271e-04

Joint ci ratio: 1.027521e-01	ci left: 2.788335e-04	ci right 3.092308e-04	k: 1454	n:4950000
Cons ci ratio: 3.760931e-02	ci left: 2.148710e-03	ci right 2.231268e-03	k: 10839	n:4950000
KS ci ratio: 7.164303e-02	ci left: 5.827859e-04	ci right 6.262865e-04	k: 2991	n:4950000
MUC20   4950000 perm   10572 sec   (468 perm/sec)   p_kst 6.042424e-04   p_cons 2.189697e-03   p_joint 2.937374e-04

Joint ci ratio: 1.026816e-01	ci left: 2.786642e-04	ci right 3.090209e-04	k: 1456	n:4960000
Cons ci ratio: 3.757987e-02	ci left: 2.147773e-03	ci right 2.230229e-03	k: 10856	n:4960000
KS ci ratio: 7.155936e-02	ci left: 5.829970e-04	ci right 6.264604e-04	k: 2998	n:4960000
MUC20   4960000 perm   10619 sec   (467 perm/sec)   p_kst 6.044355e-04   p_cons 2.188710e-03   p_joint 2.935484e-04

Joint ci ratio: 1.026816e-01	ci left: 2.781035e-04	ci right 3.083992e-04	k: 1456	n:4970000
Cons ci ratio: 3.753839e-02	ci left: 2.148235e-03	ci right 2.230616e-03	k: 10880	n:4970000
KS ci ratio: 7.148789e-02	ci left: 5.830096e-04	ci right 6.264287e-04	k: 3004	n:4970000
MUC20   4970000 perm   10658 sec   (466 perm/sec)   p_kst 6.044266e-04   p_cons 2.189135e-03   p_joint 2.929577e-04

Joint ci ratio: 1.025058e-01	ci left: 2.785233e-04	ci right 3.088097e-04	k: 1461	n:4980000
Cons ci ratio: 3.748328e-02	ci left: 2.150287e-03	ci right 2.232623e-03	k: 10912	n:4980000
KS ci ratio: 7.141662e-02	ci left: 5.830222e-04	ci right 6.263972e-04	k: 3010	n:4980000
MUC20   4980000 perm   10699 sec   (465 perm/sec)   p_kst 6.044177e-04   p_cons 2.191165e-03   p_joint 2.933735e-04

Joint ci ratio: 1.022613e-01	ci left: 2.793320e-04	ci right 3.096295e-04	k: 1468	n:4990000
Cons ci ratio: 3.742841e-02	ci left: 2.152330e-03	ci right 2.234622e-03	k: 10944	n:4990000
KS ci ratio: 7.133375e-02	ci left: 5.832316e-04	ci right 6.265697e-04	k: 3017	n:4990000
MUC20   4990000 perm   10739 sec   (465 perm/sec)   p_kst 6.046092e-04   p_cons 2.193186e-03   p_joint 2.941884e-04

Joint ci ratio: 1.021917e-01	ci left: 2.791631e-04	ci right 3.094205e-04	k: 1470	n:5000000
Cons ci ratio: 3.738743e-02	ci left: 2.152781e-03	ci right 2.234997e-03	k: 10968	n:5000000
KS ci ratio: 7.125116e-02	ci left: 5.834402e-04	ci right 6.267415e-04	k: 3024	n:5000000
MUC20   5000000 perm   10778 sec   (464 perm/sec)   p_kst 6.048000e-04   p_cons 2.193600e-03   p_joint 2.940000e-04

Outputting figure to mutsig2_images.part000000000110/MUC20.2_1637_5000000_0.0006048_0.0021936_0.000294.png
                gene_name: MUC20
               theta_stop: 0.10 
                    nperm: 5000000 
                     p_ks: 0.00060 
        ci_ks_bounds_left: 0.00058 
       ci_ks_bounds_right: 0.00063 
                   p_cons: 0.0022 
      ci_cons_bounds_left: 0.0022 
     ci_cons_bounds_right: 0.0022 
                  p_joint: 0.00029 
     ci_joint_bounds_left: 0.00028 
    ci_joint_bounds_right: 0.00031 

Current progress: 88 percent done.
MUDENG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.251928e-02	ci left: 9.016521e-01	ci right 9.131093e-01	k: 9075	n:10000
KS ci ratio: 4.837274e-02	ci left: 3.866946e-01	ci right 4.059658e-01	k: 3963	n:10000
MUDENG   10000 perm   2 sec   (6293 perm/sec)   p_kst 3.963000e-01   p_cons 9.075000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MUDENG.2_1505_10000_0.3963_0.9075_1.png
                gene_name: MUDENG
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
MUTYH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.750894e-01	ci left: 1.716007e-02	ci right 2.272454e-02	k: 198	n:10000
KS ci ratio: 6.716099e-02	ci left: 2.454909e-01	ci right 2.626525e-01	k: 2540	n:10000
MUTYH   10000 perm   2 sec   (6087 perm/sec)   p_kst 2.540000e-01   p_cons 1.980000e-02   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 1.876616e-01	ci left: 1.934382e-02	ci right 2.339700e-02	k: 426	n:20000
KS ci ratio: 4.752799e-02	ci left: 2.477303e-01	ci right 2.598414e-01	k: 5075	n:20000
MUTYH   20000 perm   4 sec   (5377 perm/sec)   p_kst 2.537500e-01   p_cons 2.130000e-02   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 1.534099e-01	ci left: 1.966392e-02	ci right 2.296302e-02	k: 638	n:30000
KS ci ratio: 3.893675e-02	ci left: 2.475913e-01	ci right 2.574566e-01	k: 7575	n:30000
MUTYH   30000 perm   6 sec   (5096 perm/sec)   p_kst 2.525000e-01   p_cons 2.126667e-02   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 1.332575e-01	ci left: 1.976230e-02	ci right 2.260780e-02	k: 846	n:40000
KS ci ratio: 3.370315e-02	ci left: 2.484470e-01	ci right 2.569890e-01	k: 10108	n:40000
MUTYH   40000 perm   8 sec   (4940 perm/sec)   p_kst 2.527000e-01   p_cons 2.115000e-02   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 1.188316e-01	ci left: 2.003289e-02	ci right 2.258311e-02	k: 1064	n:50000
KS ci ratio: 3.009285e-02	ci left: 2.495521e-01	ci right 2.571966e-01	k: 12668	n:50000
MUTYH   50000 perm   10 sec   (4833 perm/sec)   p_kst 2.533600e-01   p_cons 2.128000e-02   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 1.077056e-01	ci left: 2.043541e-02	ci right 2.277784e-02	k: 1295	n:60000
KS ci ratio: 2.752036e-02	ci left: 2.492100e-01	ci right 2.561806e-01	k: 15161	n:60000
MUTYH   60000 perm   13 sec   (4738 perm/sec)   p_kst 2.526833e-01   p_cons 2.158333e-02   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 1.000889e-01	ci left: 2.036857e-02	ci right 2.252850e-02	k: 1500	n:70000
KS ci ratio: 2.548181e-02	ci left: 2.494270e-01	ci right 2.558792e-01	k: 17685	n:70000
MUTYH   70000 perm   15 sec   (4649 perm/sec)   p_kst 2.526429e-01   p_cons 2.142857e-02   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 9.324841e-02	ci left: 2.060376e-02	ci right 2.263114e-02	k: 1728	n:80000
KS ci ratio: 2.384756e-02	ci left: 2.494549e-01	ci right 2.554880e-01	k: 20197	n:80000
MUTYH   80000 perm   18 sec   (4567 perm/sec)   p_kst 2.524625e-01   p_cons 2.160000e-02   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 8.817357e-02	ci left: 2.054054e-02	ci right 2.244603e-02	k: 1933	n:90000
KS ci ratio: 2.246634e-02	ci left: 2.499187e-01	ci right 2.556083e-01	k: 22748	n:90000
MUTYH   90000 perm   20 sec   (4483 perm/sec)   p_kst 2.527556e-01   p_cons 2.147778e-02   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 8.307557e-02	ci left: 2.087441e-02	ci right 2.269347e-02	k: 2177	n:100000
KS ci ratio: 2.133076e-02	ci left: 2.497597e-01	ci right 2.551547e-01	k: 25245	n:100000
MUTYH   100000 perm   23 sec   (4403 perm/sec)   p_kst 2.524500e-01   p_cons 2.177000e-02   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 7.910491e-02	ci left: 2.097186e-02	ci right 2.270803e-02	k: 2401	n:110000
KS ci ratio: 2.037272e-02	ci left: 2.492461e-01	ci right 2.543852e-01	k: 27699	n:110000
MUTYH   110000 perm   25 sec   (4328 perm/sec)   p_kst 2.518091e-01   p_cons 2.182727e-02   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 7.578695e-02	ci left: 2.098118e-02	ci right 2.264204e-02	k: 2616	n:120000
KS ci ratio: 1.951584e-02	ci left: 2.491550e-01	ci right 2.540737e-01	k: 30193	n:120000
MUTYH   120000 perm   28 sec   (4256 perm/sec)   p_kst 2.516083e-01   p_cons 2.180000e-02   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 7.277551e-02	ci left: 2.103569e-02	ci right 2.263190e-02	k: 2837	n:130000
KS ci ratio: 1.874683e-02	ci left: 2.493196e-01	ci right 2.540454e-01	k: 32718	n:130000
MUTYH   130000 perm   31 sec   (4186 perm/sec)   p_kst 2.516769e-01   p_cons 2.182308e-02   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 7.034395e-02	ci left: 2.093611e-02	ci right 2.246951e-02	k: 3037	n:140000
KS ci ratio: 1.805355e-02	ci left: 2.496419e-01	ci right 2.541970e-01	k: 35268	n:140000
MUTYH   140000 perm   35 sec   (4015 perm/sec)   p_kst 2.519143e-01   p_cons 2.169286e-02   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 6.784164e-02	ci left: 2.103414e-02	ci right 2.251776e-02	k: 3265	n:150000
KS ci ratio: 1.744670e-02	ci left: 2.496049e-01	ci right 2.540047e-01	k: 37770	n:150000
MUTYH   150000 perm   40 sec   (3738 perm/sec)   p_kst 2.518000e-01   p_cons 2.176667e-02   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 6.546427e-02	ci left: 2.120071e-02	ci right 2.264169e-02	k: 3506	n:160000
KS ci ratio: 1.689411e-02	ci left: 2.496434e-01	ci right 2.539031e-01	k: 40283	n:160000
MUTYH   160000 perm   43 sec   (3703 perm/sec)   p_kst 2.517687e-01   p_cons 2.191250e-02   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 6.335503e-02	ci left: 2.132532e-02	ci right 2.272634e-02	k: 3743	n:170000
KS ci ratio: 1.639450e-02	ci left: 2.495972e-01	ci right 2.537289e-01	k: 42782	n:170000
MUTYH   170000 perm   47 sec   (3650 perm/sec)   p_kst 2.516588e-01   p_cons 2.201765e-02   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 6.172333e-02	ci left: 2.123975e-02	ci right 2.259793e-02	k: 3944	n:180000
KS ci ratio: 1.594450e-02	ci left: 2.493750e-01	ci right 2.533886e-01	k: 45248	n:180000
MUTYH   180000 perm   50 sec   (3612 perm/sec)   p_kst 2.513778e-01   p_cons 2.191111e-02   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 6.018183e-02	ci left: 2.118435e-02	ci right 2.250398e-02	k: 4149	n:190000
KS ci ratio: 1.552246e-02	ci left: 2.493508e-01	ci right 2.532568e-01	k: 47747	n:190000
MUTYH   190000 perm   53 sec   (3573 perm/sec)   p_kst 2.513000e-01   p_cons 2.183684e-02   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 5.868150e-02	ci left: 2.118416e-02	ci right 2.246975e-02	k: 4364	n:200000
KS ci ratio: 1.513064e-02	ci left: 2.493702e-01	ci right 2.531770e-01	k: 50254	n:200000
MUTYH   200000 perm   57 sec   (3536 perm/sec)   p_kst 2.512700e-01   p_cons 2.182000e-02   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 5.741634e-02	ci left: 2.109045e-02	ci right 2.234185e-02	k: 4559	n:210000
KS ci ratio: 1.475959e-02	ci left: 2.495789e-01	ci right 2.532947e-01	k: 52801	n:210000
MUTYH   210000 perm   60 sec   (3491 perm/sec)   p_kst 2.514333e-01   p_cons 2.170952e-02   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 5.609111e-02	ci left: 2.110864e-02	ci right 2.233127e-02	k: 4777	n:220000
KS ci ratio: 1.442153e-02	ci left: 2.495882e-01	ci right 2.532183e-01	k: 55308	n:220000
MUTYH   220000 perm   64 sec   (3452 perm/sec)   p_kst 2.514000e-01   p_cons 2.171364e-02   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 5.489292e-02	ci left: 2.109553e-02	ci right 2.229048e-02	k: 4988	n:230000
KS ci ratio: 1.408957e-02	ci left: 2.500271e-01	ci right 2.535792e-01	k: 57914	n:230000
MUTYH   230000 perm   67 sec   (3416 perm/sec)   p_kst 2.518000e-01   p_cons 2.168696e-02   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 5.372088e-02	ci left: 2.112078e-02	ci right 2.229081e-02	k: 5208	n:240000
KS ci ratio: 1.379079e-02	ci left: 2.501226e-01	ci right 2.536001e-01	k: 60446	n:240000
MUTYH   240000 perm   71 sec   (3380 perm/sec)   p_kst 2.518583e-01   p_cons 2.170000e-02   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 5.254669e-02	ci left: 2.120348e-02	ci right 2.235164e-02	k: 5443	n:250000
KS ci ratio: 1.351454e-02	ci left: 2.500915e-01	ci right 2.534983e-01	k: 62948	n:250000
MUTYH   250000 perm   75 sec   (3343 perm/sec)   p_kst 2.517920e-01   p_cons 2.177200e-02   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 5.147870e-02	ci left: 2.125349e-02	ci right 2.238028e-02	k: 5671	n:260000
KS ci ratio: 1.326225e-02	ci left: 2.498370e-01	ci right 2.531763e-01	k: 65391	n:260000
MUTYH   260000 perm   79 sec   (3308 perm/sec)   p_kst 2.515038e-01   p_cons 2.181154e-02   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 5.049517e-02	ci left: 2.128173e-02	ci right 2.238783e-02	k: 5894	n:270000
KS ci ratio: 1.301166e-02	ci left: 2.499456e-01	ci right 2.532227e-01	k: 67927	n:270000
MUTYH   270000 perm   82 sec   (3274 perm/sec)   p_kst 2.515815e-01   p_cons 2.182963e-02   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 4.964480e-02	ci left: 2.124111e-02	ci right 2.232597e-02	k: 6098	n:280000
KS ci ratio: 1.277536e-02	ci left: 2.500292e-01	ci right 2.532474e-01	k: 70458	n:280000
MUTYH   280000 perm   86 sec   (3239 perm/sec)   p_kst 2.516357e-01   p_cons 2.177857e-02   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 4.882017e-02	ci left: 2.121706e-02	ci right 2.228218e-02	k: 6306	n:290000
KS ci ratio: 1.255585e-02	ci left: 2.499767e-01	ci right 2.531386e-01	k: 72951	n:290000
MUTYH   290000 perm   90 sec   (3206 perm/sec)   p_kst 2.515552e-01   p_cons 2.174483e-02   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 4.793012e-02	ci left: 2.128699e-02	ci right 2.233561e-02	k: 6542	n:300000
KS ci ratio: 1.234980e-02	ci left: 2.498517e-01	ci right 2.529598e-01	k: 75421	n:300000
MUTYH   300000 perm   95 sec   (3174 perm/sec)   p_kst 2.514033e-01   p_cons 2.180667e-02   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 4.719748e-02	ci left: 2.125373e-02	ci right 2.228427e-02	k: 6747	n:310000
KS ci ratio: 1.215304e-02	ci left: 2.497513e-01	ci right 2.528082e-01	k: 77896	n:310000
MUTYH   310000 perm   99 sec   (3142 perm/sec)   p_kst 2.512774e-01   p_cons 2.176452e-02   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 4.643945e-02	ci left: 2.127519e-02	ci right 2.228975e-02	k: 6969	n:320000
KS ci ratio: 1.196361e-02	ci left: 2.497136e-01	ci right 2.527221e-01	k: 80389	n:320000
MUTYH   320000 perm   103 sec   (3110 perm/sec)   p_kst 2.512156e-01   p_cons 2.177812e-02   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 4.575583e-02	ci left: 2.125951e-02	ci right 2.225801e-02	k: 7179	n:330000
KS ci ratio: 1.178287e-02	ci left: 2.496756e-01	ci right 2.526379e-01	k: 82881	n:330000
MUTYH   330000 perm   107 sec   (3077 perm/sec)   p_kst 2.511545e-01   p_cons 2.175455e-02   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 4.509531e-02	ci left: 2.125067e-02	ci right 2.223397e-02	k: 7391	n:340000
KS ci ratio: 1.161234e-02	ci left: 2.495667e-01	ci right 2.524846e-01	k: 85348	n:340000
MUTYH   340000 perm   112 sec   (3044 perm/sec)   p_kst 2.510235e-01   p_cons 2.173824e-02   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 4.448352e-02	ci left: 2.122266e-02	ci right 2.219100e-02	k: 7596	n:350000
KS ci ratio: 1.144258e-02	ci left: 2.496754e-01	ci right 2.525516e-01	k: 87889	n:350000
MUTYH   350000 perm   116 sec   (3011 perm/sec)   p_kst 2.511114e-01   p_cons 2.170286e-02   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 4.380710e-02	ci left: 2.128147e-02	ci right 2.223736e-02	k: 7832	n:360000
KS ci ratio: 1.128221e-02	ci left: 2.497062e-01	ci right 2.525422e-01	k: 90404	n:360000
MUTYH   360000 perm   121 sec   (2980 perm/sec)   p_kst 2.511222e-01   p_cons 2.175556e-02   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 4.325112e-02	ci left: 2.124897e-02	ci right 2.219098e-02	k: 8035	n:370000
KS ci ratio: 1.113153e-02	ci left: 2.496305e-01	ci right 2.524275e-01	k: 92880	n:370000
MUTYH   370000 perm   126 sec   (2940 perm/sec)   p_kst 2.510270e-01   p_cons 2.171622e-02   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 4.273434e-02	ci left: 2.120002e-02	ci right 2.212835e-02	k: 8231	n:380000
KS ci ratio: 1.098603e-02	ci left: 2.495826e-01	ci right 2.523423e-01	k: 95365	n:380000
MUTYH   380000 perm   131 sec   (2909 perm/sec)   p_kst 2.509605e-01   p_cons 2.166053e-02   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 4.218708e-02	ci left: 2.120185e-02	ci right 2.211809e-02	k: 8446	n:390000
KS ci ratio: 1.085216e-02	ci left: 2.493275e-01	ci right 2.520505e-01	k: 97768	n:390000
MUTYH   390000 perm   135 sec   (2879 perm/sec)   p_kst 2.506872e-01   p_cons 2.165641e-02   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 4.166522e-02	ci left: 2.119872e-02	ci right 2.210322e-02	k: 8659	n:400000
KS ci ratio: 1.071436e-02	ci left: 2.493899e-01	ci right 2.520788e-01	k: 100293	n:400000
MUTYH   400000 perm   140 sec   (2849 perm/sec)   p_kst 2.507325e-01   p_cons 2.164750e-02   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 4.118363e-02	ci left: 2.117408e-02	ci right 2.206684e-02	k: 8863	n:410000
KS ci ratio: 1.058010e-02	ci left: 2.495054e-01	ci right 2.521616e-01	k: 102841	n:410000
MUTYH   410000 perm   145 sec   (2820 perm/sec)   p_kst 2.508317e-01   p_cons 2.161707e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 4.070688e-02	ci left: 2.116246e-02	ci right 2.204416e-02	k: 9072	n:420000
KS ci ratio: 1.044771e-02	ci left: 2.497249e-01	ci right 2.523500e-01	k: 105435	n:420000
MUTYH   420000 perm   150 sec   (2791 perm/sec)   p_kst 2.510357e-01   p_cons 2.160000e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 4.024188e-02	ci left: 2.115604e-02	ci right 2.202717e-02	k: 9283	n:430000
KS ci ratio: 1.032477e-02	ci left: 2.497672e-01	ci right 2.523617e-01	k: 107957	n:430000
MUTYH   430000 perm   156 sec   (2764 perm/sec)   p_kst 2.510628e-01   p_cons 2.158837e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 3.980318e-02	ci left: 2.113871e-02	ci right 2.199942e-02	k: 9489	n:440000
KS ci ratio: 1.020465e-02	ci left: 2.498600e-01	ci right 2.524251e-01	k: 110502	n:440000
MUTYH   440000 perm   161 sec   (2737 perm/sec)   p_kst 2.511409e-01   p_cons 2.156591e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 3.933294e-02	ci left: 2.117062e-02	ci right 2.202222e-02	k: 9717	n:450000
KS ci ratio: 1.009102e-02	ci left: 2.498601e-01	ci right 2.523964e-01	k: 113007	n:450000
MUTYH   450000 perm   166 sec   (2711 perm/sec)   p_kst 2.511267e-01   p_cons 2.159333e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 3.889096e-02	ci left: 2.118829e-02	ci right 2.203080e-02	k: 9939	n:460000
KS ci ratio: 9.981379e-03	ci left: 2.498495e-01	ci right 2.523580e-01	k: 115507	n:460000
MUTYH   460000 perm   171 sec   (2685 perm/sec)   p_kst 2.511022e-01   p_cons 2.160652e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 3.843458e-02	ci left: 2.123686e-02	ci right 2.207118e-02	k: 10176	n:470000
KS ci ratio: 9.876525e-03	ci left: 2.497906e-01	ci right 2.522720e-01	k: 117984	n:470000
MUTYH   470000 perm   177 sec   (2652 perm/sec)   p_kst 2.510298e-01   p_cons 2.165106e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 3.801442e-02	ci left: 2.126077e-02	ci right 2.208669e-02	k: 10402	n:480000
KS ci ratio: 9.773662e-03	ci left: 2.497822e-01	ci right 2.522375e-01	k: 120484	n:480000
MUTYH   480000 perm   184 sec   (2616 perm/sec)   p_kst 2.510083e-01   p_cons 2.167083e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 3.762041e-02	ci left: 2.126959e-02	ci right 2.208710e-02	k: 10621	n:490000
KS ci ratio: 9.671847e-03	ci left: 2.498557e-01	ci right 2.522860e-01	k: 123024	n:490000
MUTYH   490000 perm   189 sec   (2592 perm/sec)   p_kst 2.510694e-01   p_cons 2.167551e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 3.719984e-02	ci left: 2.132170e-02	ci right 2.213186e-02	k: 10862	n:500000
KS ci ratio: 9.575543e-03	ci left: 2.498326e-01	ci right 2.522383e-01	k: 125517	n:500000
MUTYH   500000 perm   196 sec   (2549 perm/sec)   p_kst 2.510340e-01   p_cons 2.172400e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 3.682697e-02	ci left: 2.133295e-02	ci right 2.213524e-02	k: 11083	n:510000
KS ci ratio: 9.480279e-03	ci left: 2.498809e-01	ci right 2.522631e-01	k: 128046	n:510000
MUTYH   510000 perm   204 sec   (2496 perm/sec)   p_kst 2.510706e-01   p_cons 2.173137e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 3.649151e-02	ci left: 2.131331e-02	ci right 2.210741e-02	k: 11288	n:520000
KS ci ratio: 9.387178e-03	ci left: 2.499525e-01	ci right 2.523118e-01	k: 130588	n:520000
MUTYH   520000 perm   210 sec   (2475 perm/sec)   p_kst 2.511308e-01   p_cons 2.170769e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 3.614737e-02	ci left: 2.131502e-02	ci right 2.210154e-02	k: 11504	n:530000
KS ci ratio: 9.297094e-03	ci left: 2.500083e-01	ci right 2.523454e-01	k: 133123	n:530000
MUTYH   530000 perm   216 sec   (2455 perm/sec)   p_kst 2.511755e-01   p_cons 2.170566e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 3.578160e-02	ci left: 2.135341e-02	ci right 2.213321e-02	k: 11740	n:540000
KS ci ratio: 9.210144e-03	ci left: 2.500381e-01	ci right 2.523535e-01	k: 135645	n:540000
MUTYH   540000 perm   222 sec   (2435 perm/sec)   p_kst 2.511944e-01   p_cons 2.174074e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 3.544940e-02	ci left: 2.136341e-02	ci right 2.213618e-02	k: 11961	n:550000
KS ci ratio: 9.125545e-03	ci left: 2.500687e-01	ci right 2.523630e-01	k: 138168	n:550000
MUTYH   550000 perm   228 sec   (2417 perm/sec)   p_kst 2.512145e-01   p_cons 2.174727e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 3.511598e-02	ci left: 2.138548e-02	ci right 2.215163e-02	k: 12189	n:560000
KS ci ratio: 9.045596e-03	ci left: 2.500003e-01	ci right 2.522737e-01	k: 140636	n:560000
MUTYH   560000 perm   234 sec   (2397 perm/sec)   p_kst 2.511357e-01   p_cons 2.176607e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 3.481473e-02	ci left: 2.137897e-02	ci right 2.213818e-02	k: 12401	n:570000
KS ci ratio: 8.961190e-03	ci left: 2.502076e-01	ci right 2.524616e-01	k: 143260	n:570000
MUTYH   570000 perm   240 sec   (2377 perm/sec)   p_kst 2.513333e-01   p_cons 2.175614e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 3.452390e-02	ci left: 2.136929e-02	ci right 2.212170e-02	k: 12611	n:580000
KS ci ratio: 8.886304e-03	ci left: 2.501032e-01	ci right 2.523373e-01	k: 145707	n:580000
MUTYH   580000 perm   246 sec   (2359 perm/sec)   p_kst 2.512190e-01   p_cons 2.174310e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 3.426209e-02	ci left: 2.133308e-02	ci right 2.207840e-02	k: 12805	n:590000
KS ci ratio: 8.810683e-03	ci left: 2.501123e-01	ci right 2.523274e-01	k: 148219	n:590000
MUTYH   590000 perm   252 sec   (2339 perm/sec)   p_kst 2.512186e-01   p_cons 2.170339e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 3.398345e-02	ci left: 2.132620e-02	ci right 2.206510e-02	k: 13016	n:600000
KS ci ratio: 8.739786e-03	ci left: 2.499998e-01	ci right 2.521960e-01	k: 150658	n:600000
MUTYH   600000 perm   259 sec   (2320 perm/sec)   p_kst 2.510967e-01   p_cons 2.169333e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 3.368287e-02	ci left: 2.135533e-02	ci right 2.208857e-02	k: 13249	n:610000
KS ci ratio: 8.666832e-03	ci left: 2.500531e-01	ci right 2.522313e-01	k: 153196	n:610000
MUTYH   610000 perm   265 sec   (2301 perm/sec)   p_kst 2.511410e-01   p_cons 2.171967e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 3.342563e-02	ci left: 2.133875e-02	ci right 2.206572e-02	k: 13454	n:620000
KS ci ratio: 8.596633e-03	ci left: 2.500628e-01	ci right 2.522234e-01	k: 155708	n:620000
MUTYH   620000 perm   272 sec   (2283 perm/sec)   p_kst 2.511419e-01   p_cons 2.170000e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 3.313578e-02	ci left: 2.137154e-02	ci right 2.209319e-02	k: 13690	n:630000
KS ci ratio: 8.530308e-03	ci left: 2.499756e-01	ci right 2.521187e-01	k: 158159	n:630000
MUTYH   630000 perm   278 sec   (2265 perm/sec)   p_kst 2.510460e-01   p_cons 2.173016e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 3.287506e-02	ci left: 2.137542e-02	ci right 2.209142e-02	k: 13908	n:640000
KS ci ratio: 8.464791e-03	ci left: 2.499225e-01	ci right 2.520485e-01	k: 160630	n:640000
MUTYH   640000 perm   285 sec   (2247 perm/sec)   p_kst 2.509844e-01   p_cons 2.173125e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 3.261096e-02	ci left: 2.139142e-02	ci right 2.210209e-02	k: 14134	n:650000
KS ci ratio: 8.398939e-03	ci left: 2.499524e-01	ci right 2.520621e-01	k: 163154	n:650000
MUTYH   650000 perm   293 sec   (2219 perm/sec)   p_kst 2.510062e-01   p_cons 2.174462e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 3.235889e-02	ci left: 2.139943e-02	ci right 2.210477e-02	k: 14355	n:660000
KS ci ratio: 8.336851e-03	ci left: 2.498801e-01	ci right 2.519736e-01	k: 165611	n:660000
MUTYH   660000 perm   300 sec   (2202 perm/sec)   p_kst 2.509258e-01   p_cons 2.175000e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 3.213512e-02	ci left: 2.137762e-02	ci right 2.207727e-02	k: 14556	n:670000
KS ci ratio: 8.270799e-03	ci left: 2.500515e-01	ci right 2.521297e-01	k: 168230	n:670000
MUTYH   670000 perm   309 sec   (2170 perm/sec)   p_kst 2.510896e-01   p_cons 2.172537e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 3.187290e-02	ci left: 2.141336e-02	ci right 2.210837e-02	k: 14796	n:680000
KS ci ratio: 8.210173e-03	ci left: 2.500403e-01	ci right 2.521030e-01	k: 170728	n:680000
MUTYH   680000 perm   316 sec   (2150 perm/sec)   p_kst 2.510706e-01   p_cons 2.175882e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 3.165144e-02	ci left: 2.140208e-02	ci right 2.209180e-02	k: 15004	n:690000
KS ci ratio: 8.147879e-03	ci left: 2.501669e-01	ci right 2.522149e-01	k: 173321	n:690000
MUTYH   690000 perm   324 sec   (2127 perm/sec)   p_kst 2.511899e-01   p_cons 2.174493e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 3.143559e-02	ci left: 2.138971e-02	ci right 2.207425e-02	k: 15211	n:700000
KS ci ratio: 8.088300e-03	ci left: 2.502285e-01	ci right 2.522621e-01	k: 175871	n:700000
MUTYH   700000 perm   332 sec   (2111 perm/sec)   p_kst 2.512443e-01   p_cons 2.173000e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 3.121893e-02	ci left: 2.138470e-02	ci right 2.206428e-02	k: 15423	n:710000
KS ci ratio: 8.031543e-03	ci left: 2.502168e-01	ci right 2.522359e-01	k: 178370	n:710000
MUTYH   710000 perm   339 sec   (2092 perm/sec)   p_kst 2.512254e-01   p_cons 2.172254e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 3.102494e-02	ci left: 2.135503e-02	ci right 2.202938e-02	k: 15617	n:720000
KS ci ratio: 7.974757e-03	ci left: 2.502623e-01	ci right 2.522675e-01	k: 180910	n:720000
MUTYH   720000 perm   347 sec   (2074 perm/sec)   p_kst 2.512639e-01   p_cons 2.169028e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 3.079573e-02	ci left: 2.137921e-02	ci right 2.204925e-02	k: 15850	n:730000
KS ci ratio: 7.921120e-03	ci left: 2.502136e-01	ci right 2.522048e-01	k: 183382	n:730000
MUTYH   730000 perm   355 sec   (2058 perm/sec)   p_kst 2.512082e-01   p_cons 2.171233e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 3.057929e-02	ci left: 2.139203e-02	ci right 2.205767e-02	k: 16075	n:740000
KS ci ratio: 7.868239e-03	ci left: 2.501811e-01	ci right 2.521587e-01	k: 185865	n:740000
MUTYH   740000 perm   362 sec   (2044 perm/sec)   p_kst 2.511689e-01   p_cons 2.172297e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 3.036831e-02	ci left: 2.140319e-02	ci right 2.206451e-02	k: 16299	n:750000
KS ci ratio: 7.814187e-03	ci left: 2.502560e-01	ci right 2.522206e-01	k: 188428	n:750000
MUTYH   750000 perm   369 sec   (2030 perm/sec)   p_kst 2.512373e-01   p_cons 2.173200e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 3.014858e-02	ci left: 2.143237e-02	ci right 2.208971e-02	k: 16537	n:760000
KS ci ratio: 7.761044e-03	ci left: 2.503382e-01	ci right 2.522900e-01	k: 190998	n:760000
MUTYH   760000 perm   377 sec   (2016 perm/sec)   p_kst 2.513132e-01   p_cons 2.175921e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 2.997193e-02	ci left: 2.140665e-02	ci right 2.205929e-02	k: 16733	n:770000
KS ci ratio: 7.710992e-03	ci left: 2.503198e-01	ci right 2.522587e-01	k: 193492	n:770000
MUTYH   770000 perm   385 sec   (1999 perm/sec)   p_kst 2.512883e-01   p_cons 2.173117e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 2.978666e-02	ci left: 2.139815e-02	ci right 2.204643e-02	k: 16942	n:780000
KS ci ratio: 7.661531e-03	ci left: 2.503197e-01	ci right 2.522462e-01	k: 196000	n:780000
MUTYH   780000 perm   393 sec   (1985 perm/sec)   p_kst 2.512821e-01   p_cons 2.172051e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 2.960390e-02	ci left: 2.139114e-02	ci right 2.203516e-02	k: 17152	n:790000
KS ci ratio: 7.613292e-03	ci left: 2.503059e-01	ci right 2.522200e-01	k: 198497	n:790000
MUTYH   790000 perm   401 sec   (1971 perm/sec)   p_kst 2.512620e-01   p_cons 2.171139e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 2.940975e-02	ci left: 2.140541e-02	ci right 2.204556e-02	k: 17379	n:800000
KS ci ratio: 7.567008e-03	ci left: 2.502399e-01	ci right 2.521419e-01	k: 200952	n:800000
MUTYH   800000 perm   409 sec   (1958 perm/sec)   p_kst 2.511900e-01   p_cons 2.172375e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 2.923635e-02	ci left: 2.139482e-02	ci right 2.203082e-02	k: 17586	n:810000
KS ci ratio: 7.521064e-03	ci left: 2.502003e-01	ci right 2.520904e-01	k: 203427	n:810000
MUTYH   810000 perm   417 sec   (1945 perm/sec)   p_kst 2.511444e-01   p_cons 2.171111e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 2.906348e-02	ci left: 2.138814e-02	ci right 2.202012e-02	k: 17796	n:820000
KS ci ratio: 7.474008e-03	ci left: 2.502591e-01	ci right 2.521378e-01	k: 205982	n:820000
MUTYH   820000 perm   426 sec   (1924 perm/sec)   p_kst 2.511976e-01   p_cons 2.170244e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 2.888708e-02	ci left: 2.139120e-02	ci right 2.201937e-02	k: 18014	n:830000
KS ci ratio: 7.429442e-03	ci left: 2.502347e-01	ci right 2.521019e-01	k: 208469	n:830000
MUTYH   830000 perm   434 sec   (1910 perm/sec)   p_kst 2.511675e-01   p_cons 2.170361e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 2.870742e-02	ci left: 2.140366e-02	ci right 2.202822e-02	k: 18240	n:840000
KS ci ratio: 7.385266e-03	ci left: 2.502312e-01	ci right 2.520872e-01	k: 210973	n:840000
MUTYH   840000 perm   443 sec   (1895 perm/sec)   p_kst 2.511583e-01   p_cons 2.171429e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 2.854449e-02	ci left: 2.139597e-02	ci right 2.201671e-02	k: 18449	n:850000
KS ci ratio: 7.341617e-03	ci left: 2.502407e-01	ci right 2.520857e-01	k: 213488	n:850000
MUTYH   850000 perm   453 sec   (1877 perm/sec)   p_kst 2.511624e-01   p_cons 2.170471e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 2.838121e-02	ci left: 2.139309e-02	ci right 2.201014e-02	k: 18662	n:860000
KS ci ratio: 7.299003e-03	ci left: 2.502360e-01	ci right 2.520703e-01	k: 215991	n:860000
MUTYH   860000 perm   461 sec   (1865 perm/sec)   p_kst 2.511523e-01   p_cons 2.170000e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 2.821916e-02	ci left: 2.139257e-02	ci right 2.200602e-02	k: 18877	n:870000
KS ci ratio: 7.256014e-03	ci left: 2.502889e-01	ci right 2.521127e-01	k: 218544	n:870000
MUTYH   870000 perm   471 sec   (1848 perm/sec)   p_kst 2.512000e-01   p_cons 2.169770e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 2.806362e-02	ci left: 2.138643e-02	ci right 2.199627e-02	k: 19087	n:880000
KS ci ratio: 7.213035e-03	ci left: 2.503792e-01	ci right 2.521929e-01	k: 221131	n:880000
MUTYH   880000 perm   479 sec   (1836 perm/sec)   p_kst 2.512852e-01   p_cons 2.168977e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 2.791358e-02	ci left: 2.137597e-02	ci right 2.198220e-02	k: 19293	n:890000
KS ci ratio: 7.171903e-03	ci left: 2.504103e-01	ci right 2.522138e-01	k: 223667	n:890000
MUTYH   890000 perm   488 sec   (1825 perm/sec)   p_kst 2.513112e-01   p_cons 2.167753e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 2.775718e-02	ci left: 2.137900e-02	ci right 2.198186e-02	k: 19511	n:900000
KS ci ratio: 7.131803e-03	ci left: 2.504230e-01	ci right 2.522164e-01	k: 226187	n:900000
MUTYH   900000 perm   496 sec   (1814 perm/sec)   p_kst 2.513189e-01   p_cons 2.167889e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 2.760125e-02	ci left: 2.138524e-02	ci right 2.198484e-02	k: 19732	n:910000
KS ci ratio: 7.092824e-03	ci left: 2.504112e-01	ci right 2.521947e-01	k: 228685	n:910000
MUTYH   910000 perm   505 sec   (1802 perm/sec)   p_kst 2.513022e-01   p_cons 2.168352e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 2.746550e-02	ci left: 2.136437e-02	ci right 2.196039e-02	k: 19928	n:920000
KS ci ratio: 7.053825e-03	ci left: 2.504345e-01	ci right 2.522084e-01	k: 231215	n:920000
MUTYH   920000 perm   514 sec   (1791 perm/sec)   p_kst 2.513207e-01   p_cons 2.166087e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 2.730886e-02	ci left: 2.137920e-02	ci right 2.197218e-02	k: 20157	n:930000
KS ci ratio: 7.015522e-03	ci left: 2.504541e-01	ci right 2.522184e-01	k: 233742	n:930000
MUTYH   930000 perm   523 sec   (1780 perm/sec)   p_kst 2.513355e-01   p_cons 2.167419e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 2.716100e-02	ci left: 2.138421e-02	ci right 2.197407e-02	k: 20377	n:940000
KS ci ratio: 6.977955e-03	ci left: 2.504669e-01	ci right 2.522218e-01	k: 236263	n:940000
MUTYH   940000 perm   532 sec   (1766 perm/sec)   p_kst 2.513436e-01   p_cons 2.167766e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 2.701820e-02	ci left: 2.138494e-02	ci right 2.197167e-02	k: 20593	n:950000
KS ci ratio: 6.940151e-03	ci left: 2.505247e-01	ci right 2.522705e-01	k: 238827	n:950000
MUTYH   950000 perm   541 sec   (1756 perm/sec)   p_kst 2.513968e-01   p_cons 2.167684e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 2.687565e-02	ci left: 2.138877e-02	ci right 2.197246e-02	k: 20812	n:960000
KS ci ratio: 6.903871e-03	ci left: 2.505314e-01	ci right 2.522680e-01	k: 241343	n:960000
MUTYH   960000 perm   550 sec   (1746 perm/sec)   p_kst 2.513990e-01   p_cons 2.167917e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 2.675093e-02	ci left: 2.136794e-02	ci right 2.194832e-02	k: 21007	n:970000
KS ci ratio: 6.868436e-03	ci left: 2.505225e-01	ci right 2.522501e-01	k: 243844	n:970000
MUTYH   970000 perm   560 sec   (1733 perm/sec)   p_kst 2.513856e-01   p_cons 2.165670e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 2.660870e-02	ci left: 2.137797e-02	ci right 2.195548e-02	k: 21232	n:980000
KS ci ratio: 6.833356e-03	ci left: 2.505240e-01	ci right 2.522428e-01	k: 246355	n:980000
MUTYH   980000 perm   571 sec   (1716 perm/sec)   p_kst 2.513827e-01   p_cons 2.166531e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 2.648196e-02	ci left: 2.136672e-02	ci right 2.194114e-02	k: 21436	n:990000
KS ci ratio: 6.799685e-03	ci left: 2.504771e-01	ci right 2.521870e-01	k: 248818	n:990000
MUTYH   990000 perm   582 sec   (1700 perm/sec)   p_kst 2.513313e-01   p_cons 2.165253e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 2.635702e-02	ci left: 2.135570e-02	ci right 2.192707e-02	k: 21640	n:1000000
KS ci ratio: 6.765499e-03	ci left: 2.504870e-01	ci right 2.521884e-01	k: 251337	n:1000000
MUTYH   1000000 perm   594 sec   (1682 perm/sec)   p_kst 2.513370e-01   p_cons 2.164000e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 2.621850e-02	ci left: 2.136950e-02	ci right 2.193820e-02	k: 21869	n:1010000
KS ci ratio: 6.733701e-03	ci left: 2.503920e-01	ci right 2.520847e-01	k: 253750	n:1010000
MUTYH   1010000 perm   604 sec   (1673 perm/sec)   p_kst 2.512376e-01   p_cons 2.165248e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 2.608817e-02	ci left: 2.137330e-02	ci right 2.193922e-02	k: 22088	n:1020000
KS ci ratio: 6.700863e-03	ci left: 2.503821e-01	ci right 2.520664e-01	k: 256248	n:1020000
MUTYH   1020000 perm   613 sec   (1663 perm/sec)   p_kst 2.512235e-01   p_cons 2.165490e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 2.595501e-02	ci left: 2.138475e-02	ci right 2.194804e-02	k: 22315	n:1030000
KS ci ratio: 6.668294e-03	ci left: 2.503840e-01	ci right 2.520601e-01	k: 258758	n:1030000
MUTYH   1030000 perm   623 sec   (1653 perm/sec)   p_kst 2.512214e-01   p_cons 2.166505e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 2.583442e-02	ci left: 2.137879e-02	ci right 2.193927e-02	k: 22524	n:1040000
KS ci ratio: 6.636856e-03	ci left: 2.503484e-01	ci right 2.520164e-01	k: 261229	n:1040000
MUTYH   1040000 perm   633 sec   (1643 perm/sec)   p_kst 2.511817e-01   p_cons 2.165769e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 2.571433e-02	ci left: 2.137484e-02	ci right 2.193257e-02	k: 22735	n:1050000
KS ci ratio: 6.605023e-03	ci left: 2.503611e-01	ci right 2.520212e-01	k: 263750	n:1050000
MUTYH   1050000 perm   643 sec   (1634 perm/sec)   p_kst 2.511905e-01   p_cons 2.165238e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 2.560218e-02	ci left: 2.136065e-02	ci right 2.191555e-02	k: 22935	n:1060000
KS ci ratio: 6.574287e-03	ci left: 2.503369e-01	ci right 2.519890e-01	k: 266232	n:1060000
MUTYH   1060000 perm   652 sec   (1625 perm/sec)   p_kst 2.511623e-01   p_cons 2.163679e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 2.547010e-02	ci left: 2.138203e-02	ci right 2.193458e-02	k: 23173	n:1070000
KS ci ratio: 6.543715e-03	ci left: 2.503280e-01	ci right 2.519724e-01	k: 268730	n:1070000
MUTYH   1070000 perm   662 sec   (1615 perm/sec)   p_kst 2.511495e-01   p_cons 2.165701e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 2.534947e-02	ci left: 2.138738e-02	ci right 2.193741e-02	k: 23394	n:1080000
KS ci ratio: 6.514320e-03	ci left: 2.502759e-01	ci right 2.519125e-01	k: 271181	n:1080000
MUTYH   1080000 perm   672 sec   (1606 perm/sec)   p_kst 2.510935e-01   p_cons 2.166111e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 2.524200e-02	ci left: 2.137349e-02	ci right 2.192080e-02	k: 23594	n:1090000
KS ci ratio: 6.485887e-03	ci left: 2.501917e-01	ci right 2.518206e-01	k: 273596	n:1090000
MUTYH   1090000 perm   682 sec   (1597 perm/sec)   p_kst 2.510055e-01   p_cons 2.164587e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 2.511970e-02	ci left: 2.138696e-02	ci right 2.193192e-02	k: 23824	n:1100000
KS ci ratio: 6.455824e-03	ci left: 2.502253e-01	ci right 2.518469e-01	k: 276139	n:1100000
MUTYH   1100000 perm   692 sec   (1589 perm/sec)   p_kst 2.510355e-01   p_cons 2.165818e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 2.501672e-02	ci left: 2.137065e-02	ci right 2.191293e-02	k: 24021	n:1110000
KS ci ratio: 6.425930e-03	ci left: 2.502728e-01	ci right 2.518871e-01	k: 278698	n:1110000
MUTYH   1110000 perm   703 sec   (1580 perm/sec)   p_kst 2.510793e-01   p_cons 2.164054e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 2.490920e-02	ci left: 2.136440e-02	ci right 2.190415e-02	k: 24229	n:1120000
KS ci ratio: 6.396476e-03	ci left: 2.503176e-01	ci right 2.519248e-01	k: 281255	n:1120000
MUTYH   1120000 perm   713 sec   (1571 perm/sec)   p_kst 2.511205e-01   p_cons 2.163304e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 2.479788e-02	ci left: 2.136705e-02	ci right 2.190443e-02	k: 24447	n:1130000
KS ci ratio: 6.369028e-03	ci left: 2.502671e-01	ci right 2.518670e-01	k: 283705	n:1130000
MUTYH   1130000 perm   723 sec   (1563 perm/sec)   p_kst 2.510664e-01   p_cons 2.163451e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 2.469367e-02	ci left: 2.136008e-02	ci right 2.189499e-02	k: 24654	n:1140000
KS ci ratio: 6.340332e-03	ci left: 2.503120e-01	ci right 2.519050e-01	k: 286263	n:1140000
MUTYH   1140000 perm   733 sec   (1554 perm/sec)   p_kst 2.511079e-01   p_cons 2.162632e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 2.458974e-02	ci left: 2.135495e-02	ci right 2.188746e-02	k: 24863	n:1150000
KS ci ratio: 6.312955e-03	ci left: 2.503007e-01	ci right 2.518867e-01	k: 288757	n:1150000
MUTYH   1150000 perm   744 sec   (1546 perm/sec)   p_kst 2.510930e-01   p_cons 2.162000e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 2.448163e-02	ci left: 2.135935e-02	ci right 2.188959e-02	k: 25083	n:1160000
KS ci ratio: 6.285554e-03	ci left: 2.503119e-01	ci right 2.518911e-01	k: 291277	n:1160000
MUTYH   1160000 perm   755 sec   (1537 perm/sec)   p_kst 2.511009e-01   p_cons 2.162328e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 2.438035e-02	ci left: 2.135433e-02	ci right 2.188223e-02	k: 25292	n:1170000
KS ci ratio: 6.258038e-03	ci left: 2.503511e-01	ci right 2.519236e-01	k: 293830	n:1170000
MUTYH   1170000 perm   765 sec   (1529 perm/sec)   p_kst 2.511368e-01   p_cons 2.161709e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 2.428129e-02	ci left: 2.134772e-02	ci right 2.187327e-02	k: 25499	n:1180000
KS ci ratio: 6.232411e-03	ci left: 2.502974e-01	ci right 2.518631e-01	k: 296274	n:1180000
MUTYH   1180000 perm   776 sec   (1521 perm/sec)   p_kst 2.510797e-01   p_cons 2.160932e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 2.418487e-02	ci left: 2.133872e-02	ci right 2.186193e-02	k: 25703	n:1190000
KS ci ratio: 6.206527e-03	ci left: 2.502791e-01	ci right 2.518381e-01	k: 298759	n:1190000
MUTYH   1190000 perm   787 sec   (1513 perm/sec)   p_kst 2.510580e-01   p_cons 2.159916e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 2.407772e-02	ci left: 2.135058e-02	ci right 2.187173e-02	k: 25932	n:1200000
KS ci ratio: 6.180415e-03	ci left: 2.502943e-01	ci right 2.518469e-01	k: 301284	n:1200000
MUTYH   1200000 perm   798 sec   (1505 perm/sec)   p_kst 2.510700e-01   p_cons 2.161000e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 2.397479e-02	ci left: 2.135732e-02	ci right 2.187638e-02	k: 26155	n:1210000
KS ci ratio: 6.155022e-03	ci left: 2.502854e-01	ci right 2.518315e-01	k: 303780	n:1210000
MUTYH   1210000 perm   808 sec   (1497 perm/sec)   p_kst 2.510579e-01   p_cons 2.161570e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 2.387826e-02	ci left: 2.135499e-02	ci right 2.187188e-02	k: 26367	n:1220000
KS ci ratio: 6.128363e-03	ci left: 2.503733e-01	ci right 2.519132e-01	k: 306394	n:1220000
MUTYH   1220000 perm   819 sec   (1489 perm/sec)   p_kst 2.511426e-01   p_cons 2.161230e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 2.377740e-02	ci left: 2.136240e-02	ci right 2.187725e-02	k: 26591	n:1230000
KS ci ratio: 6.102865e-03	ci left: 2.504094e-01	ci right 2.519430e-01	k: 308946	n:1230000
MUTYH   1230000 perm   830 sec   (1481 perm/sec)   p_kst 2.511756e-01   p_cons 2.161870e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 2.367916e-02	ci left: 2.136729e-02	ci right 2.188011e-02	k: 26812	n:1240000
KS ci ratio: 6.078321e-03	ci left: 2.504054e-01	ci right 2.519329e-01	k: 311449	n:1240000
MUTYH   1240000 perm   841 sec   (1474 perm/sec)   p_kst 2.511685e-01   p_cons 2.162258e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 2.357811e-02	ci left: 2.137927e-02	ci right 2.189015e-02	k: 27042	n:1250000
KS ci ratio: 6.054071e-03	ci left: 2.504015e-01	ci right 2.519228e-01	k: 313952	n:1250000
MUTYH   1250000 perm   853 sec   (1466 perm/sec)   p_kst 2.511616e-01   p_cons 2.163360e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 2.347439e-02	ci left: 2.139816e-02	ci right 2.190722e-02	k: 27281	n:1260000
KS ci ratio: 6.029740e-03	ci left: 2.504207e-01	ci right 2.519360e-01	k: 316484	n:1260000
MUTYH   1260000 perm   864 sec   (1459 perm/sec)   p_kst 2.511778e-01   p_cons 2.165159e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 2.338115e-02	ci left: 2.140032e-02	ci right 2.190738e-02	k: 27499	n:1270000
KS ci ratio: 6.006680e-03	ci left: 2.503782e-01	ci right 2.518875e-01	k: 318938	n:1270000
MUTYH   1270000 perm   875 sec   (1451 perm/sec)   p_kst 2.511323e-01   p_cons 2.165276e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 2.328515e-02	ci left: 2.140944e-02	ci right 2.191460e-02	k: 27726	n:1280000
KS ci ratio: 5.983162e-03	ci left: 2.503817e-01	ci right 2.518850e-01	k: 321450	n:1280000
MUTYH   1280000 perm   886 sec   (1444 perm/sec)   p_kst 2.511328e-01   p_cons 2.166094e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 2.319371e-02	ci left: 2.141226e-02	ci right 2.191548e-02	k: 27945	n:1290000
KS ci ratio: 5.959980e-03	ci left: 2.503813e-01	ci right 2.518788e-01	k: 323957	n:1290000
MUTYH   1290000 perm   898 sec   (1437 perm/sec)   p_kst 2.511295e-01   p_cons 2.166279e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 2.310208e-02	ci left: 2.141733e-02	ci right 2.191865e-02	k: 28167	n:1300000
KS ci ratio: 5.936422e-03	ci left: 2.504216e-01	ci right 2.519134e-01	k: 326517	n:1300000
MUTYH   1300000 perm   910 sec   (1429 perm/sec)   p_kst 2.511669e-01   p_cons 2.166692e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 2.301733e-02	ci left: 2.141170e-02	ci right 2.191103e-02	k: 28375	n:1310000
KS ci ratio: 5.912744e-03	ci left: 2.504865e-01	ci right 2.519727e-01	k: 329110	n:1310000
MUTYH   1310000 perm   921 sec   (1422 perm/sec)   p_kst 2.512290e-01   p_cons 2.166031e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 2.292245e-02	ci left: 2.142650e-02	ci right 2.192409e-02	k: 28610	n:1320000
KS ci ratio: 5.890344e-03	ci left: 2.504868e-01	ci right 2.519673e-01	k: 331619	n:1320000
MUTYH   1320000 perm   933 sec   (1415 perm/sec)   p_kst 2.512265e-01   p_cons 2.167424e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 2.283925e-02	ci left: 2.142164e-02	ci right 2.191729e-02	k: 28819	n:1330000
KS ci ratio: 5.867505e-03	ci left: 2.505314e-01	ci right 2.520065e-01	k: 334187	n:1330000
MUTYH   1330000 perm   945 sec   (1407 perm/sec)   p_kst 2.512684e-01   p_cons 2.166842e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 2.274694e-02	ci left: 2.143541e-02	ci right 2.192934e-02	k: 29053	n:1340000
KS ci ratio: 5.846459e-03	ci left: 2.504770e-01	ci right 2.519464e-01	k: 336623	n:1340000
MUTYH   1340000 perm   957 sec   (1400 perm/sec)   p_kst 2.512112e-01   p_cons 2.168134e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 2.265653e-02	ci left: 2.144751e-02	ci right 2.193973e-02	k: 29285	n:1350000
KS ci ratio: 5.824274e-03	ci left: 2.505115e-01	ci right 2.519755e-01	k: 339178	n:1350000
MUTYH   1350000 perm   969 sec   (1393 perm/sec)   p_kst 2.512430e-01   p_cons 2.169259e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 2.258675e-02	ci left: 2.142287e-02	ci right 2.191299e-02	k: 29467	n:1360000
KS ci ratio: 5.803314e-03	ci left: 2.504823e-01	ci right 2.519408e-01	k: 341647	n:1360000
MUTYH   1360000 perm   981 sec   (1386 perm/sec)   p_kst 2.512110e-01   p_cons 2.166691e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 2.250094e-02	ci left: 2.142981e-02	ci right 2.191820e-02	k: 29692	n:1370000
KS ci ratio: 5.782691e-03	ci left: 2.504462e-01	ci right 2.518994e-01	k: 344106	n:1370000
MUTYH   1370000 perm   994 sec   (1379 perm/sec)   p_kst 2.511723e-01   p_cons 2.167299e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 2.242070e-02	ci left: 2.142800e-02	ci right 2.191459e-02	k: 29905	n:1380000
KS ci ratio: 5.761632e-03	ci left: 2.504534e-01	ci right 2.519013e-01	k: 346624	n:1380000
MUTYH   1380000 perm   1006 sec   (1372 perm/sec)   p_kst 2.511768e-01   p_cons 2.167029e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 2.233942e-02	ci left: 2.142980e-02	ci right 2.191464e-02	k: 30123	n:1390000
KS ci ratio: 5.740482e-03	ci left: 2.504813e-01	ci right 2.519240e-01	k: 349171	n:1390000
MUTYH   1390000 perm   1018 sec   (1365 perm/sec)   p_kst 2.512022e-01   p_cons 2.167122e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 2.225601e-02	ci left: 2.143726e-02	ci right 2.192044e-02	k: 30349	n:1400000
KS ci ratio: 5.720075e-03	ci left: 2.504753e-01	ci right 2.519129e-01	k: 351671	n:1400000
MUTYH   1400000 perm   1031 sec   (1358 perm/sec)   p_kst 2.511936e-01   p_cons 2.167786e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 2.218206e-02	ci left: 2.142839e-02	ci right 2.190975e-02	k: 30552	n:1410000
KS ci ratio: 5.700033e-03	ci left: 2.504595e-01	ci right 2.518919e-01	k: 354157	n:1410000
MUTYH   1410000 perm   1043 sec   (1352 perm/sec)   p_kst 2.511752e-01   p_cons 2.166809e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 2.211436e-02	ci left: 2.140915e-02	ci right 2.188858e-02	k: 30740	n:1420000
KS ci ratio: 5.679468e-03	ci left: 2.504924e-01	ci right 2.519198e-01	k: 356712	n:1420000
MUTYH   1420000 perm   1056 sec   (1345 perm/sec)   p_kst 2.512056e-01   p_cons 2.164789e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 2.204727e-02	ci left: 2.139017e-02	ci right 2.186771e-02	k: 30928	n:1430000
KS ci ratio: 5.659480e-03	ci left: 2.505012e-01	ci right 2.519236e-01	k: 359233	n:1430000
MUTYH   1430000 perm   1068 sec   (1339 perm/sec)   p_kst 2.512119e-01   p_cons 2.162797e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 2.197862e-02	ci left: 2.137561e-02	ci right 2.185132e-02	k: 31122	n:1440000
KS ci ratio: 5.639026e-03	ci left: 2.505549e-01	ci right 2.519725e-01	k: 361819	n:1440000
MUTYH   1440000 perm   1081 sec   (1332 perm/sec)   p_kst 2.512632e-01   p_cons 2.161250e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 2.190239e-02	ci left: 2.137703e-02	ci right 2.185109e-02	k: 31339	n:1450000
KS ci ratio: 5.619688e-03	ci left: 2.505480e-01	ci right 2.519606e-01	k: 364318	n:1450000
MUTYH   1450000 perm   1093 sec   (1326 perm/sec)   p_kst 2.512538e-01   p_cons 2.161310e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 2.183544e-02	ci left: 2.136207e-02	ci right 2.183435e-02	k: 31532	n:1460000
KS ci ratio: 5.600334e-03	ci left: 2.505555e-01	ci right 2.519633e-01	k: 366838	n:1460000
MUTYH   1460000 perm   1106 sec   (1320 perm/sec)   p_kst 2.512589e-01   p_cons 2.159726e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 2.175543e-02	ci left: 2.137372e-02	ci right 2.184450e-02	k: 31764	n:1470000
KS ci ratio: 5.581591e-03	ci left: 2.505351e-01	ci right 2.519380e-01	k: 369317	n:1470000
MUTYH   1470000 perm   1119 sec   (1314 perm/sec)   p_kst 2.512361e-01   p_cons 2.160816e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 2.167595e-02	ci left: 2.138588e-02	ci right 2.185518e-02	k: 31997	n:1480000
KS ci ratio: 5.562367e-03	ci left: 2.505601e-01	ci right 2.519584e-01	k: 371863	n:1480000
MUTYH   1480000 perm   1132 sec   (1308 perm/sec)   p_kst 2.512588e-01   p_cons 2.161959e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 2.160625e-02	ci left: 2.138053e-02	ci right 2.184818e-02	k: 32204	n:1490000
KS ci ratio: 5.542776e-03	ci left: 2.506231e-01	ci right 2.520168e-01	k: 374466	n:1490000
MUTYH   1490000 perm   1145 sec   (1301 perm/sec)   p_kst 2.513195e-01   p_cons 2.161342e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 2.153687e-02	ci left: 2.137591e-02	ci right 2.184194e-02	k: 32412	n:1500000
KS ci ratio: 5.524144e-03	ci left: 2.506340e-01	ci right 2.520230e-01	k: 376992	n:1500000
MUTYH   1500000 perm   1158 sec   (1296 perm/sec)   p_kst 2.513280e-01   p_cons 2.160800e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 2.146883e-02	ci left: 2.137003e-02	ci right 2.183445e-02	k: 32618	n:1510000
KS ci ratio: 5.506241e-03	ci left: 2.506076e-01	ci right 2.519920e-01	k: 379462	n:1510000
MUTYH   1510000 perm   1171 sec   (1290 perm/sec)   p_kst 2.512993e-01   p_cons 2.160132e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 2.140276e-02	ci left: 2.136162e-02	ci right 2.182441e-02	k: 32820	n:1520000
KS ci ratio: 5.488847e-03	ci left: 2.505587e-01	ci right 2.519383e-01	k: 381897	n:1520000
MUTYH   1520000 perm   1184 sec   (1284 perm/sec)   p_kst 2.512480e-01   p_cons 2.159211e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 2.132740e-02	ci left: 2.137283e-02	ci right 2.183421e-02	k: 33052	n:1530000
KS ci ratio: 5.470942e-03	ci left: 2.505567e-01	ci right 2.519318e-01	k: 384403	n:1530000
MUTYH   1530000 perm   1197 sec   (1278 perm/sec)   p_kst 2.512438e-01   p_cons 2.160261e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 2.125022e-02	ci left: 2.138906e-02	ci right 2.184910e-02	k: 33292	n:1540000
KS ci ratio: 5.453305e-03	ci left: 2.505482e-01	ci right 2.519189e-01	k: 386899	n:1540000
MUTYH   1540000 perm   1210 sec   (1273 perm/sec)   p_kst 2.512331e-01   p_cons 2.161818e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 2.117839e-02	ci left: 2.139610e-02	ci right 2.185472e-02	k: 33518	n:1550000
KS ci ratio: 5.436108e-03	ci left: 2.505212e-01	ci right 2.518874e-01	k: 389366	n:1550000
MUTYH   1550000 perm   1223 sec   (1267 perm/sec)   p_kst 2.512039e-01   p_cons 2.162452e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 2.110953e-02	ci left: 2.139859e-02	ci right 2.185575e-02	k: 33737	n:1560000
KS ci ratio: 5.418140e-03	ci left: 2.505593e-01	ci right 2.519211e-01	k: 391934	n:1560000
MUTYH   1560000 perm   1237 sec   (1262 perm/sec)   p_kst 2.512397e-01   p_cons 2.162628e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 2.105020e-02	ci left: 2.138331e-02	ci right 2.183884e-02	k: 33928	n:1570000
KS ci ratio: 5.401318e-03	ci left: 2.505294e-01	ci right 2.518868e-01	k: 394396	n:1570000
MUTYH   1570000 perm   1250 sec   (1256 perm/sec)   p_kst 2.512076e-01   p_cons 2.161019e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 2.098414e-02	ci left: 2.138270e-02	ci right 2.183678e-02	k: 34142	n:1580000
KS ci ratio: 5.383701e-03	ci left: 2.505662e-01	ci right 2.519195e-01	k: 396963	n:1580000
MUTYH   1580000 perm   1263 sec   (1251 perm/sec)   p_kst 2.512424e-01   p_cons 2.160886e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 2.091093e-02	ci left: 2.139775e-02	ci right 2.185054e-02	k: 34381	n:1590000
KS ci ratio: 5.367152e-03	ci left: 2.505398e-01	ci right 2.518887e-01	k: 399430	n:1590000
MUTYH   1590000 perm   1277 sec   (1246 perm/sec)   p_kst 2.512138e-01   p_cons 2.162327e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 2.084309e-02	ci left: 2.140328e-02	ci right 2.185470e-02	k: 34605	n:1600000
KS ci ratio: 5.349937e-03	ci left: 2.505712e-01	ci right 2.519159e-01	k: 401989	n:1600000
MUTYH   1600000 perm   1290 sec   (1240 perm/sec)   p_kst 2.512431e-01   p_cons 2.162813e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 2.077316e-02	ci left: 2.141431e-02	ci right 2.186443e-02	k: 34838	n:1610000
KS ci ratio: 5.333731e-03	ci left: 2.505426e-01	ci right 2.518831e-01	k: 404452	n:1610000
MUTYH   1610000 perm   1304 sec   (1235 perm/sec)   p_kst 2.512124e-01   p_cons 2.163851e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 2.069911e-02	ci left: 2.143503e-02	ci right 2.188396e-02	k: 35087	n:1620000
KS ci ratio: 5.317245e-03	ci left: 2.505446e-01	ci right 2.518810e-01	k: 406964	n:1620000
MUTYH   1620000 perm   1317 sec   (1230 perm/sec)   p_kst 2.512123e-01   p_cons 2.165864e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 2.063839e-02	ci left: 2.142987e-02	ci right 2.187736e-02	k: 35294	n:1630000
KS ci ratio: 5.300953e-03	ci left: 2.505435e-01	ci right 2.518758e-01	k: 409471	n:1630000
MUTYH   1630000 perm   1332 sec   (1224 perm/sec)   p_kst 2.512092e-01   p_cons 2.165276e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 2.057257e-02	ci left: 2.143629e-02	ci right 2.188247e-02	k: 35520	n:1640000
KS ci ratio: 5.284734e-03	ci left: 2.505479e-01	ci right 2.518761e-01	k: 411987	n:1640000
MUTYH   1640000 perm   1345 sec   (1219 perm/sec)   p_kst 2.512116e-01   p_cons 2.165854e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 2.051500e-02	ci left: 2.142696e-02	ci right 2.187169e-02	k: 35720	n:1650000
KS ci ratio: 5.268450e-03	ci left: 2.505674e-01	ci right 2.518916e-01	k: 414528	n:1650000
MUTYH   1650000 perm   1359 sec   (1214 perm/sec)   p_kst 2.512291e-01   p_cons 2.164848e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 2.045180e-02	ci left: 2.143034e-02	ci right 2.187374e-02	k: 35941	n:1660000
KS ci ratio: 5.252863e-03	ci left: 2.505476e-01	ci right 2.518677e-01	k: 417004	n:1660000
MUTYH   1660000 perm   1374 sec   (1209 perm/sec)   p_kst 2.512072e-01   p_cons 2.165120e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 2.039149e-02	ci left: 2.142890e-02	ci right 2.187096e-02	k: 36154	n:1670000
KS ci ratio: 5.236812e-03	ci left: 2.505711e-01	ci right 2.518873e-01	k: 419552	n:1670000
MUTYH   1670000 perm   1387 sec   (1204 perm/sec)   p_kst 2.512287e-01   p_cons 2.164910e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 2.032514e-02	ci left: 2.144111e-02	ci right 2.188197e-02	k: 36390	n:1680000
KS ci ratio: 5.221338e-03	ci left: 2.505633e-01	ci right 2.518756e-01	k: 422048	n:1680000
MUTYH   1680000 perm   1401 sec   (1199 perm/sec)   p_kst 2.512190e-01   p_cons 2.166071e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 2.026566e-02	ci left: 2.144023e-02	ci right 2.187976e-02	k: 36604	n:1690000
KS ci ratio: 5.205312e-03	ci left: 2.506054e-01	ci right 2.519138e-01	k: 424628	n:1690000
MUTYH   1690000 perm   1416 sec   (1194 perm/sec)   p_kst 2.512592e-01   p_cons 2.165917e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 2.020838e-02	ci left: 2.143584e-02	ci right 2.187402e-02	k: 36812	n:1700000
KS ci ratio: 5.190204e-03	ci left: 2.505911e-01	ci right 2.518956e-01	k: 427113	n:1700000
MUTYH   1700000 perm   1430 sec   (1189 perm/sec)   p_kst 2.512429e-01   p_cons 2.165412e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 2.014935e-02	ci left: 2.143617e-02	ci right 2.187306e-02	k: 37028	n:1710000
KS ci ratio: 5.175146e-03	ci left: 2.505828e-01	ci right 2.518835e-01	k: 429608	n:1710000
MUTYH   1710000 perm   1445 sec   (1184 perm/sec)   p_kst 2.512327e-01   p_cons 2.165380e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 2.009415e-02	ci left: 2.142954e-02	ci right 2.186509e-02	k: 37232	n:1720000
KS ci ratio: 5.159819e-03	ci left: 2.506037e-01	ci right 2.519006e-01	k: 432153	n:1720000
MUTYH   1720000 perm   1459 sec   (1179 perm/sec)   p_kst 2.512517e-01   p_cons 2.164651e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 2.003475e-02	ci left: 2.143278e-02	ci right 2.186709e-02	k: 37453	n:1730000
KS ci ratio: 5.144628e-03	ci left: 2.506243e-01	ci right 2.519176e-01	k: 434698	n:1730000
MUTYH   1730000 perm   1474 sec   (1173 perm/sec)   p_kst 2.512705e-01   p_cons 2.164913e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 1.998103e-02	ci left: 2.142511e-02	ci right 2.185809e-02	k: 37655	n:1740000
KS ci ratio: 5.129994e-03	ci left: 2.506137e-01	ci right 2.519032e-01	k: 437189	n:1740000
MUTYH   1740000 perm   1489 sec   (1169 perm/sec)   p_kst 2.512580e-01   p_cons 2.164080e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 1.992397e-02	ci left: 2.142550e-02	ci right 2.185723e-02	k: 37871	n:1750000
KS ci ratio: 5.115305e-03	ci left: 2.506164e-01	ci right 2.519022e-01	k: 439703	n:1750000
MUTYH   1750000 perm   1505 sec   (1163 perm/sec)   p_kst 2.512589e-01   p_cons 2.164057e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 1.987460e-02	ci left: 2.141061e-02	ci right 2.184097e-02	k: 38060	n:1760000
KS ci ratio: 5.100525e-03	ci left: 2.506349e-01	ci right 2.519171e-01	k: 442245	n:1760000
MUTYH   1760000 perm   1519 sec   (1159 perm/sec)   p_kst 2.512756e-01   p_cons 2.162500e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 1.981554e-02	ci left: 2.141726e-02	ci right 2.184645e-02	k: 38287	n:1770000
KS ci ratio: 5.085912e-03	ci left: 2.506504e-01	ci right 2.519290e-01	k: 444782	n:1770000
MUTYH   1770000 perm   1534 sec   (1154 perm/sec)   p_kst 2.512893e-01   p_cons 2.163107e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 1.975830e-02	ci left: 2.142104e-02	ci right 2.184906e-02	k: 38509	n:1780000
KS ci ratio: 5.072203e-03	ci left: 2.506079e-01	ci right 2.518828e-01	k: 447216	n:1780000
MUTYH   1780000 perm   1549 sec   (1149 perm/sec)   p_kst 2.512449e-01   p_cons 2.163427e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 1.970469e-02	ci left: 2.141811e-02	ci right 2.184489e-02	k: 38719	n:1790000
KS ci ratio: 5.058071e-03	ci left: 2.506055e-01	ci right 2.518768e-01	k: 449721	n:1790000
MUTYH   1790000 perm   1564 sec   (1145 perm/sec)   p_kst 2.512408e-01   p_cons 2.163073e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 1.965047e-02	ci left: 2.141742e-02	ci right 2.184301e-02	k: 38933	n:1800000
KS ci ratio: 5.044414e-03	ci left: 2.505765e-01	ci right 2.518443e-01	k: 452178	n:1800000
MUTYH   1800000 perm   1579 sec   (1140 perm/sec)   p_kst 2.512100e-01   p_cons 2.162944e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 1.959747e-02	ci left: 2.141510e-02	ci right 2.183947e-02	k: 39144	n:1810000
KS ci ratio: 5.030741e-03	ci left: 2.505572e-01	ci right 2.518214e-01	k: 454652	n:1810000
MUTYH   1810000 perm   1594 sec   (1136 perm/sec)   p_kst 2.511890e-01   p_cons 2.162652e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 1.954540e-02	ci left: 2.141170e-02	ci right 2.183487e-02	k: 39353	n:1820000
KS ci ratio: 5.016739e-03	ci left: 2.505711e-01	ci right 2.518319e-01	k: 457186	n:1820000
MUTYH   1820000 perm   1609 sec   (1131 perm/sec)   p_kst 2.512011e-01   p_cons 2.162253e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 1.949022e-02	ci left: 2.141596e-02	ci right 2.183801e-02	k: 39576	n:1830000
KS ci ratio: 5.002665e-03	ci left: 2.505991e-01	ci right 2.518564e-01	k: 459746	n:1830000
MUTYH   1830000 perm   1625 sec   (1126 perm/sec)   p_kst 2.512273e-01   p_cons 2.162623e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 1.943526e-02	ci left: 2.142072e-02	ci right 2.184166e-02	k: 39800	n:1840000
KS ci ratio: 4.989198e-03	ci left: 2.505898e-01	ci right 2.518436e-01	k: 462238	n:1840000
MUTYH   1840000 perm   1640 sec   (1122 perm/sec)   p_kst 2.512163e-01   p_cons 2.163043e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 1.938125e-02	ci left: 2.142435e-02	ci right 2.184418e-02	k: 40022	n:1850000
KS ci ratio: 4.975990e-03	ci left: 2.505692e-01	ci right 2.518197e-01	k: 464709	n:1850000
MUTYH   1850000 perm   1655 sec   (1118 perm/sec)   p_kst 2.511941e-01   p_cons 2.163351e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 1.932916e-02	ci left: 2.142473e-02	ci right 2.184342e-02	k: 40238	n:1860000
KS ci ratio: 4.962305e-03	ci left: 2.505930e-01	ci right 2.518401e-01	k: 467262	n:1860000
MUTYH   1860000 perm   1671 sec   (1113 perm/sec)   p_kst 2.512161e-01   p_cons 2.163333e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 1.927482e-02	ci left: 2.143097e-02	ci right 2.184859e-02	k: 40465	n:1870000
KS ci ratio: 4.949315e-03	ci left: 2.505721e-01	ci right 2.518158e-01	k: 469732	n:1870000
MUTYH   1870000 perm   1686 sec   (1109 perm/sec)   p_kst 2.511936e-01   p_cons 2.163904e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 1.922551e-02	ci left: 2.142708e-02	ci right 2.184355e-02	k: 40673	n:1880000
KS ci ratio: 4.936309e-03	ci left: 2.505605e-01	ci right 2.518009e-01	k: 472219	n:1880000
MUTYH   1880000 perm   1702 sec   (1104 perm/sec)   p_kst 2.511803e-01   p_cons 2.163457e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 1.917227e-02	ci left: 2.143271e-02	ci right 2.184812e-02	k: 40899	n:1890000
KS ci ratio: 4.923563e-03	ci left: 2.505369e-01	ci right 2.517740e-01	k: 474683	n:1890000
MUTYH   1890000 perm   1718 sec   (1100 perm/sec)   p_kst 2.511550e-01   p_cons 2.163968e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 1.912090e-02	ci left: 2.143514e-02	ci right 2.184947e-02	k: 41119	n:1900000
KS ci ratio: 4.911033e-03	ci left: 2.505045e-01	ci right 2.517383e-01	k: 477130	n:1900000
MUTYH   1900000 perm   1734 sec   (1096 perm/sec)   p_kst 2.511211e-01   p_cons 2.164158e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 1.906923e-02	ci left: 2.143911e-02	ci right 2.185239e-02	k: 41342	n:1910000
KS ci ratio: 4.897705e-03	ci left: 2.505411e-01	ci right 2.517717e-01	k: 479708	n:1910000
MUTYH   1910000 perm   1750 sec   (1091 perm/sec)   p_kst 2.511560e-01   p_cons 2.164503e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 1.901961e-02	ci left: 2.143942e-02	ci right 2.185161e-02	k: 41558	n:1920000
KS ci ratio: 4.884714e-03	ci left: 2.505596e-01	ci right 2.517870e-01	k: 482252	n:1920000
MUTYH   1920000 perm   1766 sec   (1087 perm/sec)   p_kst 2.511729e-01   p_cons 2.164479e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 1.897038e-02	ci left: 2.143972e-02	ci right 2.185084e-02	k: 41774	n:1930000
KS ci ratio: 4.872095e-03	ci left: 2.505572e-01	ci right 2.517814e-01	k: 484756	n:1930000
MUTYH   1930000 perm   1782 sec   (1083 perm/sec)   p_kst 2.511689e-01   p_cons 2.164456e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 1.892106e-02	ci left: 2.144104e-02	ci right 2.185111e-02	k: 41992	n:1940000
KS ci ratio: 4.859300e-03	ci left: 2.505759e-01	ci right 2.517970e-01	k: 487301	n:1940000
MUTYH   1940000 perm   1798 sec   (1079 perm/sec)   p_kst 2.511861e-01   p_cons 2.164536e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 1.887419e-02	ci left: 2.143776e-02	ci right 2.184674e-02	k: 42201	n:1950000
KS ci ratio: 4.846837e-03	ci left: 2.505765e-01	ci right 2.517945e-01	k: 489811	n:1950000
MUTYH   1950000 perm   1814 sec   (1075 perm/sec)   p_kst 2.511851e-01   p_cons 2.164154e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 1.882494e-02	ci left: 2.144061e-02	ci right 2.184856e-02	k: 42422	n:1960000
KS ci ratio: 4.833997e-03	ci left: 2.506138e-01	ci right 2.518287e-01	k: 492393	n:1960000
MUTYH   1960000 perm   1830 sec   (1071 perm/sec)   p_kst 2.512209e-01   p_cons 2.164388e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 1.877923e-02	ci left: 2.143635e-02	ci right 2.184323e-02	k: 42629	n:1970000
KS ci ratio: 4.821863e-03	ci left: 2.506036e-01	ci right 2.518154e-01	k: 494882	n:1970000
MUTYH   1970000 perm   1846 sec   (1067 perm/sec)   p_kst 2.512091e-01   p_cons 2.163909e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 1.872871e-02	ci left: 2.144371e-02	ci right 2.184961e-02	k: 42859	n:1980000
KS ci ratio: 4.809827e-03	ci left: 2.505930e-01	ci right 2.518017e-01	k: 497370	n:1980000
MUTYH   1980000 perm   1863 sec   (1063 perm/sec)   p_kst 2.511970e-01   p_cons 2.164596e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 1.867748e-02	ci left: 2.145349e-02	ci right 2.185846e-02	k: 43094	n:1990000
KS ci ratio: 4.797586e-03	ci left: 2.506056e-01	ci right 2.518112e-01	k: 499904	n:1990000
MUTYH   1990000 perm   1879 sec   (1059 perm/sec)   p_kst 2.512080e-01   p_cons 2.165528e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 1.863503e-02	ci left: 2.144426e-02	ci right 2.184812e-02	k: 43291	n:2000000
KS ci ratio: 4.785927e-03	ci left: 2.505796e-01	ci right 2.517822e-01	k: 502361	n:2000000
MUTYH   2000000 perm   1895 sec   (1055 perm/sec)   p_kst 2.511805e-01   p_cons 2.164550e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 1.859112e-02	ci left: 2.143909e-02	ci right 2.184189e-02	k: 43496	n:2010000
KS ci ratio: 4.774126e-03	ci left: 2.505717e-01	ci right 2.517713e-01	k: 504854	n:2010000
MUTYH   2010000 perm   1912 sec   (1051 perm/sec)   p_kst 2.511711e-01   p_cons 2.163980e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 1.854362e-02	ci left: 2.144284e-02	ci right 2.184467e-02	k: 43719	n:2020000
KS ci ratio: 4.762862e-03	ci left: 2.505283e-01	ci right 2.517249e-01	k: 507275	n:2020000
MUTYH   2020000 perm   1929 sec   (1047 perm/sec)   p_kst 2.511262e-01   p_cons 2.164307e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 1.850358e-02	ci left: 2.143037e-02	ci right 2.183109e-02	k: 43909	n:2030000
KS ci ratio: 4.751000e-03	ci left: 2.505390e-01	ci right 2.517326e-01	k: 509805	n:2030000
MUTYH   2030000 perm   1946 sec   (1043 perm/sec)   p_kst 2.511355e-01   p_cons 2.163005e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 1.846080e-02	ci left: 2.142486e-02	ci right 2.182454e-02	k: 44113	n:2040000
KS ci ratio: 4.739177e-03	ci left: 2.505535e-01	ci right 2.517442e-01	k: 512343	n:2040000
MUTYH   2040000 perm   1963 sec   (1039 perm/sec)   p_kst 2.511485e-01   p_cons 2.162402e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 1.841259e-02	ci left: 2.143251e-02	ci right 2.183128e-02	k: 44344	n:2050000
KS ci ratio: 4.727619e-03	ci left: 2.505538e-01	ci right 2.517416e-01	k: 514852	n:2050000
MUTYH   2050000 perm   1980 sec   (1035 perm/sec)   p_kst 2.511473e-01   p_cons 2.163122e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 1.836686e-02	ci left: 2.143526e-02	ci right 2.183308e-02	k: 44565	n:2060000
KS ci ratio: 4.715914e-03	ci left: 2.505724e-01	ci right 2.517574e-01	k: 517399	n:2060000
MUTYH   2060000 perm   1997 sec   (1032 perm/sec)   p_kst 2.511646e-01   p_cons 2.163350e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 1.832481e-02	ci left: 2.143028e-02	ci right 2.182709e-02	k: 44770	n:2070000
KS ci ratio: 4.704749e-03	ci left: 2.505547e-01	ci right 2.517368e-01	k: 519871	n:2070000
MUTYH   2070000 perm   2015 sec   (1028 perm/sec)   p_kst 2.511454e-01   p_cons 2.162802e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 1.828263e-02	ci left: 2.142632e-02	ci right 2.182213e-02	k: 44977	n:2080000
KS ci ratio: 4.693458e-03	ci left: 2.505535e-01	ci right 2.517327e-01	k: 522377	n:2080000
MUTYH   2080000 perm   2032 sec   (1024 perm/sec)   p_kst 2.511428e-01   p_cons 2.162356e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 1.823539e-02	ci left: 2.143477e-02	ci right 2.182971e-02	k: 45210	n:2090000
KS ci ratio: 4.682046e-03	ci left: 2.505686e-01	ci right 2.517450e-01	k: 524917	n:2090000
MUTYH   2090000 perm   2049 sec   (1020 perm/sec)   p_kst 2.511565e-01   p_cons 2.163158e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 1.819014e-02	ci left: 2.143936e-02	ci right 2.183339e-02	k: 45435	n:2100000
KS ci ratio: 4.671155e-03	ci left: 2.505483e-01	ci right 2.517219e-01	k: 527383	n:2100000
MUTYH   2100000 perm   2067 sec   (1016 perm/sec)   p_kst 2.511348e-01   p_cons 2.163571e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 1.814828e-02	ci left: 2.143682e-02	ci right 2.182989e-02	k: 45645	n:2110000
KS ci ratio: 4.659722e-03	ci left: 2.505780e-01	ci right 2.517488e-01	k: 529954	n:2110000
MUTYH   2110000 perm   2084 sec   (1013 perm/sec)   p_kst 2.511630e-01   p_cons 2.163270e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 1.810307e-02	ci left: 2.144277e-02	ci right 2.183496e-02	k: 45873	n:2120000
KS ci ratio: 4.648764e-03	ci left: 2.505758e-01	ci right 2.517438e-01	k: 532458	n:2120000
MUTYH   2120000 perm   2101 sec   (1009 perm/sec)   p_kst 2.511594e-01   p_cons 2.163821e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 1.805960e-02	ci left: 2.144538e-02	ci right 2.183667e-02	k: 46094	n:2130000
KS ci ratio: 4.637703e-03	ci left: 2.505881e-01	ci right 2.517534e-01	k: 534993	n:2130000
MUTYH   2130000 perm   2118 sec   (1005 perm/sec)   p_kst 2.511704e-01   p_cons 2.164038e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 1.801883e-02	ci left: 2.144240e-02	ci right 2.183273e-02	k: 46303	n:2140000
KS ci ratio: 4.626910e-03	ci left: 2.505849e-01	ci right 2.517475e-01	k: 537495	n:2140000
MUTYH   2140000 perm   2136 sec   (1002 perm/sec)   p_kst 2.511659e-01   p_cons 2.163692e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 1.797992e-02	ci left: 2.143573e-02	ci right 2.182509e-02	k: 46504	n:2150000
KS ci ratio: 4.616547e-03	ci left: 2.505530e-01	ci right 2.517128e-01	k: 539935	n:2150000
MUTYH   2150000 perm   2154 sec   (998 perm/sec)   p_kst 2.511326e-01   p_cons 2.162977e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 1.793831e-02	ci left: 2.143604e-02	ci right 2.182450e-02	k: 46720	n:2160000
KS ci ratio: 4.605719e-03	ci left: 2.505648e-01	ci right 2.517220e-01	k: 542469	n:2160000
MUTYH   2160000 perm   2171 sec   (995 perm/sec)   p_kst 2.511431e-01   p_cons 2.162963e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 1.789776e-02	ci left: 2.143452e-02	ci right 2.182206e-02	k: 46932	n:2170000
KS ci ratio: 4.595294e-03	ci left: 2.505498e-01	ci right 2.517043e-01	k: 544945	n:2170000
MUTYH   2170000 perm   2189 sec   (991 perm/sec)   p_kst 2.511267e-01   p_cons 2.162765e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 1.785750e-02	ci left: 2.143301e-02	ci right 2.181964e-02	k: 47144	n:2180000
KS ci ratio: 4.584996e-03	ci left: 2.505304e-01	ci right 2.516822e-01	k: 547411	n:2180000
MUTYH   2180000 perm   2208 sec   (988 perm/sec)   p_kst 2.511060e-01   p_cons 2.162569e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 1.782154e-02	ci left: 2.142196e-02	ci right 2.180761e-02	k: 47335	n:2190000
KS ci ratio: 4.574316e-03	ci left: 2.505481e-01	ci right 2.516973e-01	k: 549958	n:2190000
MUTYH   2190000 perm   2226 sec   (984 perm/sec)   p_kst 2.511224e-01   p_cons 2.161416e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 1.777872e-02	ci left: 2.142777e-02	ci right 2.181259e-02	k: 47563	n:2200000
KS ci ratio: 4.563816e-03	ci left: 2.505571e-01	ci right 2.517036e-01	k: 552486	n:2200000
MUTYH   2200000 perm   2244 sec   (980 perm/sec)   p_kst 2.511300e-01   p_cons 2.161955e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 1.774324e-02	ci left: 2.141685e-02	ci right 2.180070e-02	k: 47754	n:2210000
KS ci ratio: 4.553020e-03	ci left: 2.505962e-01	ci right 2.517402e-01	k: 555081	n:2210000
MUTYH   2210000 perm   2262 sec   (977 perm/sec)   p_kst 2.511679e-01   p_cons 2.160814e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 1.770457e-02	ci left: 2.141410e-02	ci right 2.179706e-02	k: 47963	n:2220000
KS ci ratio: 4.542954e-03	ci left: 2.505810e-01	ci right 2.517224e-01	k: 557556	n:2220000
MUTYH   2220000 perm   2280 sec   (974 perm/sec)   p_kst 2.511514e-01   p_cons 2.160495e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 1.766652e-02	ci left: 2.141049e-02	ci right 2.179255e-02	k: 48170	n:2230000
KS ci ratio: 4.532564e-03	ci left: 2.505982e-01	ci right 2.517370e-01	k: 560103	n:2230000
MUTYH   2230000 perm   2298 sec   (970 perm/sec)   p_kst 2.511673e-01   p_cons 2.160090e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 1.763077e-02	ci left: 2.140202e-02	ci right 2.178315e-02	k: 48366	n:2240000
KS ci ratio: 4.522611e-03	ci left: 2.505849e-01	ci right 2.517211e-01	k: 562582	n:2240000
MUTYH   2240000 perm   2317 sec   (967 perm/sec)   p_kst 2.511527e-01   p_cons 2.159196e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 1.759450e-02	ci left: 2.139540e-02	ci right 2.177561e-02	k: 48566	n:2250000
KS ci ratio: 4.512574e-03	ci left: 2.505841e-01	ci right 2.517179e-01	k: 565089	n:2250000
MUTYH   2250000 perm   2335 sec   (964 perm/sec)   p_kst 2.511507e-01   p_cons 2.158489e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 1.755311e-02	ci left: 2.140161e-02	ci right 2.178103e-02	k: 48795	n:2260000
KS ci ratio: 4.502630e-03	ci left: 2.505812e-01	ci right 2.517124e-01	k: 567591	n:2260000
MUTYH   2260000 perm   2354 sec   (960 perm/sec)   p_kst 2.511465e-01   p_cons 2.159071e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 1.751293e-02	ci left: 2.140558e-02	ci right 2.178419e-02	k: 49019	n:2270000
KS ci ratio: 4.493177e-03	ci left: 2.505426e-01	ci right 2.516713e-01	k: 570012	n:2270000
MUTYH   2270000 perm   2372 sec   (957 perm/sec)   p_kst 2.511066e-01   p_cons 2.159427e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 1.747683e-02	ci left: 2.140034e-02	ci right 2.177807e-02	k: 49222	n:2280000
KS ci ratio: 4.483705e-03	ci left: 2.505109e-01	ci right 2.516371e-01	k: 572448	n:2280000
MUTYH   2280000 perm   2391 sec   (954 perm/sec)   p_kst 2.510737e-01   p_cons 2.158860e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 1.743897e-02	ci left: 2.139993e-02	ci right 2.177683e-02	k: 49436	n:2290000
KS ci ratio: 4.473893e-03	ci left: 2.505131e-01	ci right 2.516368e-01	k: 574961	n:2290000
MUTYH   2290000 perm   2410 sec   (950 perm/sec)   p_kst 2.510747e-01   p_cons 2.158777e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 1.740314e-02	ci left: 2.139519e-02	ci right 2.177123e-02	k: 49640	n:2300000
KS ci ratio: 4.464052e-03	ci left: 2.505232e-01	ci right 2.516444e-01	k: 577492	n:2300000
MUTYH   2300000 perm   2429 sec   (947 perm/sec)   p_kst 2.510835e-01   p_cons 2.158261e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 1.736220e-02	ci left: 2.140343e-02	ci right 2.177872e-02	k: 49874	n:2310000
KS ci ratio: 4.454907e-03	ci left: 2.504799e-01	ci right 2.515987e-01	k: 579900	n:2310000
MUTYH   2310000 perm   2448 sec   (944 perm/sec)   p_kst 2.510390e-01   p_cons 2.159048e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 1.732402e-02	ci left: 2.140559e-02	ci right 2.178009e-02	k: 50094	n:2320000
KS ci ratio: 4.444767e-03	ci left: 2.505257e-01	ci right 2.516421e-01	k: 582514	n:2320000
MUTYH   2320000 perm   2467 sec   (940 perm/sec)   p_kst 2.510836e-01   p_cons 2.159224e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 1.728363e-02	ci left: 2.141372e-02	ci right 2.178747e-02	k: 50328	n:2330000
KS ci ratio: 4.435284e-03	ci left: 2.505214e-01	ci right 2.516354e-01	k: 585012	n:2330000
MUTYH   2330000 perm   2487 sec   (937 perm/sec)   p_kst 2.510781e-01   p_cons 2.160000e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 1.724387e-02	ci left: 2.142092e-02	ci right 2.179394e-02	k: 50560	n:2340000
KS ci ratio: 4.425911e-03	ci left: 2.505129e-01	ci right 2.516245e-01	k: 587500	n:2340000
MUTYH   2340000 perm   2506 sec   (934 perm/sec)   p_kst 2.510684e-01   p_cons 2.160684e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 1.720906e-02	ci left: 2.141663e-02	ci right 2.178881e-02	k: 50765	n:2350000
KS ci ratio: 4.416373e-03	ci left: 2.505235e-01	ci right 2.516328e-01	k: 590033	n:2350000
MUTYH   2350000 perm   2525 sec   (931 perm/sec)   p_kst 2.510779e-01   p_cons 2.160213e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 1.717291e-02	ci left: 2.141617e-02	ci right 2.178755e-02	k: 50979	n:2360000
KS ci ratio: 4.407298e-03	ci left: 2.504998e-01	ci right 2.516067e-01	k: 592485	n:2360000
MUTYH   2360000 perm   2544 sec   (928 perm/sec)   p_kst 2.510530e-01   p_cons 2.160127e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 1.713288e-02	ci left: 2.142580e-02	ci right 2.179647e-02	k: 51217	n:2370000
KS ci ratio: 4.398062e-03	ci left: 2.504949e-01	ci right 2.515994e-01	k: 594981	n:2370000
MUTYH   2370000 perm   2564 sec   (924 perm/sec)   p_kst 2.510468e-01   p_cons 2.161055e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 1.709670e-02	ci left: 2.142656e-02	ci right 2.179645e-02	k: 51434	n:2380000
KS ci ratio: 4.388771e-03	ci left: 2.504996e-01	ci right 2.516018e-01	k: 597500	n:2380000
MUTYH   2380000 perm   2583 sec   (921 perm/sec)   p_kst 2.510504e-01   p_cons 2.161092e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 1.705906e-02	ci left: 2.143148e-02	ci right 2.180064e-02	k: 51661	n:2390000
KS ci ratio: 4.379850e-03	ci left: 2.504776e-01	ci right 2.515774e-01	k: 599955	n:2390000
MUTYH   2390000 perm   2602 sec   (918 perm/sec)   p_kst 2.510272e-01   p_cons 2.161548e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 1.702066e-02	ci left: 2.143886e-02	ci right 2.180730e-02	k: 51894	n:2400000
KS ci ratio: 4.370683e-03	ci left: 2.504815e-01	ci right 2.515791e-01	k: 602472	n:2400000
MUTYH   2400000 perm   2623 sec   (915 perm/sec)   p_kst 2.510300e-01   p_cons 2.162250e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 1.698352e-02	ci left: 2.144369e-02	ci right 2.181140e-02	k: 52121	n:2410000
KS ci ratio: 4.361684e-03	ci left: 2.504759e-01	ci right 2.515712e-01	k: 604966	n:2410000
MUTYH   2410000 perm   2642 sec   (912 perm/sec)   p_kst 2.510232e-01   p_cons 2.162697e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 1.694546e-02	ci left: 2.145136e-02	ci right 2.181838e-02	k: 52355	n:2420000
KS ci ratio: 4.352688e-03	ci left: 2.504749e-01	ci right 2.515679e-01	k: 607471	n:2420000
MUTYH   2420000 perm   2662 sec   (909 perm/sec)   p_kst 2.510211e-01   p_cons 2.163430e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 1.691127e-02	ci left: 2.144996e-02	ci right 2.181620e-02	k: 52567	n:2430000
KS ci ratio: 4.343929e-03	ci left: 2.504582e-01	ci right 2.515490e-01	k: 609938	n:2430000
MUTYH   2430000 perm   2682 sec   (906 perm/sec)   p_kst 2.510033e-01   p_cons 2.163251e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 1.687287e-02	ci left: 2.145959e-02	ci right 2.182516e-02	k: 52806	n:2440000
KS ci ratio: 4.335320e-03	ci left: 2.504331e-01	ci right 2.515216e-01	k: 612384	n:2440000
MUTYH   2440000 perm   2703 sec   (903 perm/sec)   p_kst 2.509770e-01   p_cons 2.164180e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 1.683799e-02	ci left: 2.146101e-02	ci right 2.182584e-02	k: 53025	n:2450000
KS ci ratio: 4.326510e-03	ci left: 2.504302e-01	ci right 2.515165e-01	k: 614884	n:2450000
MUTYH   2450000 perm   2723 sec   (900 perm/sec)   p_kst 2.509731e-01   p_cons 2.164286e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 1.680267e-02	ci left: 2.146404e-02	ci right 2.182815e-02	k: 53248	n:2460000
KS ci ratio: 4.317552e-03	ci left: 2.504449e-01	ci right 2.515289e-01	k: 617427	n:2460000
MUTYH   2460000 perm   2743 sec   (897 perm/sec)   p_kst 2.509866e-01   p_cons 2.164553e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 1.677062e-02	ci left: 2.145938e-02	ci right 2.182271e-02	k: 53452	n:2470000
KS ci ratio: 4.308979e-03	ci left: 2.504306e-01	ci right 2.515125e-01	k: 619899	n:2470000
MUTYH   2470000 perm   2763 sec   (894 perm/sec)   p_kst 2.509713e-01   p_cons 2.164049e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 1.673556e-02	ci left: 2.146280e-02	ci right 2.182542e-02	k: 53676	n:2480000
KS ci ratio: 4.300318e-03	ci left: 2.504286e-01	ci right 2.515082e-01	k: 622401	n:2480000
MUTYH   2480000 perm   2783 sec   (891 perm/sec)   p_kst 2.509681e-01   p_cons 2.164355e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 1.669804e-02	ci left: 2.147299e-02	ci right 2.183495e-02	k: 53917	n:2490000
KS ci ratio: 4.291659e-03	ci left: 2.504310e-01	ci right 2.515085e-01	k: 624914	n:2490000
MUTYH   2490000 perm   2803 sec   (888 perm/sec)   p_kst 2.509695e-01   p_cons 2.165341e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 1.666485e-02	ci left: 2.147274e-02	ci right 2.183397e-02	k: 54132	n:2500000
KS ci ratio: 4.282943e-03	ci left: 2.504430e-01	ci right 2.515183e-01	k: 627451	n:2500000
MUTYH   2500000 perm   2823 sec   (885 perm/sec)   p_kst 2.509804e-01   p_cons 2.165280e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 1.663045e-02	ci left: 2.147606e-02	ci right 2.183660e-02	k: 54356	n:2510000
KS ci ratio: 4.273921e-03	ci left: 2.504864e-01	ci right 2.515596e-01	k: 630067	n:2510000
MUTYH   2510000 perm   2844 sec   (883 perm/sec)   p_kst 2.510227e-01   p_cons 2.165578e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 1.659720e-02	ci left: 2.147698e-02	ci right 2.183681e-02	k: 54574	n:2520000
KS ci ratio: 4.265286e-03	ci left: 2.505004e-01	ci right 2.515716e-01	k: 632610	n:2520000
MUTYH   2520000 perm   2865 sec   (880 perm/sec)   p_kst 2.510357e-01   p_cons 2.165635e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 1.656584e-02	ci left: 2.147357e-02	ci right 2.183266e-02	k: 54781	n:2530000
KS ci ratio: 4.256769e-03	ci left: 2.505085e-01	ci right 2.515775e-01	k: 635138	n:2530000
MUTYH   2530000 perm   2886 sec   (877 perm/sec)   p_kst 2.510427e-01   p_cons 2.165257e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 1.653113e-02	ci left: 2.147921e-02	ci right 2.183763e-02	k: 55011	n:2540000
KS ci ratio: 4.248681e-03	ci left: 2.504830e-01	ci right 2.515499e-01	k: 637581	n:2540000
MUTYH   2540000 perm   2907 sec   (874 perm/sec)   p_kst 2.510161e-01   p_cons 2.165787e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 1.649420e-02	ci left: 2.149105e-02	ci right 2.184886e-02	k: 55257	n:2550000
KS ci ratio: 4.240555e-03	ci left: 2.504652e-01	ci right 2.515299e-01	k: 640043	n:2550000
MUTYH   2550000 perm   2928 sec   (871 perm/sec)   p_kst 2.509973e-01   p_cons 2.166941e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 1.645811e-02	ci left: 2.150124e-02	ci right 2.185843e-02	k: 55499	n:2560000
KS ci ratio: 4.232423e-03	ci left: 2.504522e-01	ci right 2.515148e-01	k: 642517	n:2560000
MUTYH   2560000 perm   2950 sec   (868 perm/sec)   p_kst 2.509832e-01   p_cons 2.167930e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 1.642663e-02	ci left: 2.150012e-02	ci right 2.185660e-02	k: 55712	n:2570000
KS ci ratio: 4.224084e-03	ci left: 2.504618e-01	ci right 2.515224e-01	k: 645049	n:2570000
MUTYH   2570000 perm   2971 sec   (865 perm/sec)   p_kst 2.509918e-01   p_cons 2.167782e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 1.639429e-02	ci left: 2.150171e-02	ci right 2.185751e-02	k: 55932	n:2580000
KS ci ratio: 4.216328e-03	ci left: 2.504238e-01	ci right 2.514822e-01	k: 647458	n:2580000
MUTYH   2580000 perm   2992 sec   (862 perm/sec)   p_kst 2.509527e-01   p_cons 2.167907e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 1.636466e-02	ci left: 2.149675e-02	ci right 2.185181e-02	k: 56135	n:2590000
KS ci ratio: 4.207984e-03	ci left: 2.504423e-01	ci right 2.514988e-01	k: 650013	n:2590000
MUTYH   2590000 perm   3013 sec   (860 perm/sec)   p_kst 2.509703e-01   p_cons 2.167375e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 1.633194e-02	ci left: 2.150025e-02	ci right 2.185466e-02	k: 56360	n:2600000
KS ci ratio: 4.199806e-03	ci left: 2.504504e-01	ci right 2.515048e-01	k: 652541	n:2600000
MUTYH   2600000 perm   3035 sec   (857 perm/sec)   p_kst 2.509773e-01   p_cons 2.167692e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 1.630353e-02	ci left: 2.149305e-02	ci right 2.184671e-02	k: 56557	n:2610000
KS ci ratio: 4.191632e-03	ci left: 2.504622e-01	ci right 2.515146e-01	k: 655079	n:2610000
MUTYH   2610000 perm   3057 sec   (854 perm/sec)   p_kst 2.509881e-01   p_cons 2.166935e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 1.627484e-02	ci left: 2.148704e-02	ci right 2.183998e-02	k: 56757	n:2620000
KS ci ratio: 4.183573e-03	ci left: 2.504678e-01	ci right 2.515182e-01	k: 657601	n:2620000
MUTYH   2620000 perm   3078 sec   (851 perm/sec)   p_kst 2.509927e-01   p_cons 2.166298e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 1.624396e-02	ci left: 2.148713e-02	ci right 2.183940e-02	k: 56973	n:2630000
KS ci ratio: 4.175654e-03	ci left: 2.504650e-01	ci right 2.515134e-01	k: 660101	n:2630000
MUTYH   2630000 perm   3099 sec   (849 perm/sec)   p_kst 2.509890e-01   p_cons 2.166274e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 1.621528e-02	ci left: 2.148195e-02	ci right 2.183350e-02	k: 57175	n:2640000
KS ci ratio: 4.167931e-03	ci left: 2.504487e-01	ci right 2.514951e-01	k: 662565	n:2640000
MUTYH   2640000 perm   3121 sec   (846 perm/sec)   p_kst 2.509716e-01   p_cons 2.165720e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 1.618402e-02	ci left: 2.148394e-02	ci right 2.183484e-02	k: 57396	n:2650000
KS ci ratio: 4.159691e-03	ci left: 2.504829e-01	ci right 2.515274e-01	k: 665163	n:2650000
MUTYH   2650000 perm   3143 sec   (843 perm/sec)   p_kst 2.510049e-01   p_cons 2.165887e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 1.615036e-02	ci left: 2.149266e-02	ci right 2.184297e-02	k: 57635	n:2660000
KS ci ratio: 4.151885e-03	ci left: 2.504820e-01	ci right 2.515245e-01	k: 667668	n:2660000
MUTYH   2660000 perm   3165 sec   (841 perm/sec)   p_kst 2.510030e-01   p_cons 2.166729e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 1.612118e-02	ci left: 2.149012e-02	ci right 2.183975e-02	k: 57844	n:2670000
KS ci ratio: 4.144087e-03	ci left: 2.504845e-01	ci right 2.515250e-01	k: 670182	n:2670000
MUTYH   2670000 perm   3186 sec   (838 perm/sec)   p_kst 2.510045e-01   p_cons 2.166442e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 1.609259e-02	ci left: 2.148649e-02	ci right 2.183544e-02	k: 58050	n:2680000
KS ci ratio: 4.136726e-03	ci left: 2.504511e-01	ci right 2.514897e-01	k: 672600	n:2680000
MUTYH   2680000 perm   3208 sec   (835 perm/sec)   p_kst 2.509701e-01   p_cons 2.166045e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 1.606132e-02	ci left: 2.149030e-02	ci right 2.183862e-02	k: 58276	n:2690000
KS ci ratio: 4.128881e-03	ci left: 2.504656e-01	ci right 2.515022e-01	k: 675146	n:2690000
MUTYH   2690000 perm   3230 sec   (833 perm/sec)   p_kst 2.509836e-01   p_cons 2.166394e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 1.603108e-02	ci left: 2.149186e-02	ci right 2.183954e-02	k: 58496	n:2700000
KS ci ratio: 4.120834e-03	ci left: 2.505025e-01	ci right 2.515373e-01	k: 677753	n:2700000
MUTYH   2700000 perm   3252 sec   (830 perm/sec)   p_kst 2.510196e-01   p_cons 2.166519e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 1.599865e-02	ci left: 2.149966e-02	ci right 2.184676e-02	k: 58733	n:2710000
KS ci ratio: 4.113164e-03	ci left: 2.505089e-01	ci right 2.515418e-01	k: 680278	n:2710000
MUTYH   2710000 perm   3274 sec   (828 perm/sec)   p_kst 2.510251e-01   p_cons 2.167269e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 1.597333e-02	ci left: 2.148909e-02	ci right 2.183546e-02	k: 58920	n:2720000
KS ci ratio: 4.105722e-03	ci left: 2.504984e-01	ci right 2.515293e-01	k: 682757	n:2720000
MUTYH   2720000 perm   3296 sec   (825 perm/sec)   p_kst 2.510136e-01   p_cons 2.166176e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 1.594702e-02	ci left: 2.148151e-02	ci right 2.182719e-02	k: 59115	n:2730000
KS ci ratio: 4.098287e-03	ci left: 2.504909e-01	ci right 2.515199e-01	k: 685244	n:2730000
MUTYH   2730000 perm   3319 sec   (823 perm/sec)   p_kst 2.510051e-01   p_cons 2.165385e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 1.591455e-02	ci left: 2.149072e-02	ci right 2.183584e-02	k: 59356	n:2740000
KS ci ratio: 4.090941e-03	ci left: 2.504790e-01	ci right 2.515062e-01	k: 687719	n:2740000
MUTYH   2740000 perm   3341 sec   (820 perm/sec)   p_kst 2.509923e-01   p_cons 2.166277e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 1.588608e-02	ci left: 2.148972e-02	ci right 2.183420e-02	k: 59569	n:2750000
KS ci ratio: 4.083370e-03	ci left: 2.504916e-01	ci right 2.515169e-01	k: 690261	n:2750000
MUTYH   2750000 perm   3363 sec   (818 perm/sec)   p_kst 2.510040e-01   p_cons 2.166145e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 1.586007e-02	ci left: 2.148259e-02	ci right 2.182638e-02	k: 59765	n:2760000
KS ci ratio: 4.075785e-03	ci left: 2.505092e-01	ci right 2.515326e-01	k: 692817	n:2760000
MUTYH   2760000 perm   3386 sec   (815 perm/sec)   p_kst 2.510207e-01   p_cons 2.165399e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 1.582919e-02	ci left: 2.148882e-02	ci right 2.183204e-02	k: 59998	n:2770000
KS ci ratio: 4.068383e-03	ci left: 2.505136e-01	ci right 2.515353e-01	k: 695337	n:2770000
MUTYH   2770000 perm   3408 sec   (813 perm/sec)   p_kst 2.510242e-01   p_cons 2.165993e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 1.580400e-02	ci left: 2.148031e-02	ci right 2.182284e-02	k: 60190	n:2780000
KS ci ratio: 4.061262e-03	ci left: 2.504958e-01	ci right 2.515155e-01	k: 697795	n:2780000
MUTYH   2780000 perm   3431 sec   (810 perm/sec)   p_kst 2.510054e-01   p_cons 2.165108e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 1.577585e-02	ci left: 2.148008e-02	ci right 2.182199e-02	k: 60405	n:2790000
KS ci ratio: 4.053761e-03	ci left: 2.505167e-01	ci right 2.515347e-01	k: 700361	n:2790000
MUTYH   2790000 perm   3454 sec   (808 perm/sec)   p_kst 2.510254e-01   p_cons 2.165054e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 1.574706e-02	ci left: 2.148198e-02	ci right 2.182329e-02	k: 60626	n:2800000
KS ci ratio: 4.046475e-03	ci left: 2.505215e-01	ci right 2.515376e-01	k: 702882	n:2800000
MUTYH   2800000 perm   3477 sec   (805 perm/sec)   p_kst 2.510293e-01   p_cons 2.165214e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 1.571869e-02	ci left: 2.148316e-02	ci right 2.182387e-02	k: 60845	n:2810000
KS ci ratio: 4.039342e-03	ci left: 2.505155e-01	ci right 2.515298e-01	k: 705373	n:2810000
MUTYH   2810000 perm   3499 sec   (803 perm/sec)   p_kst 2.510224e-01   p_cons 2.165302e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 1.569310e-02	ci left: 2.147727e-02	ci right 2.181733e-02	k: 61044	n:2820000
KS ci ratio: 4.032194e-03	ci left: 2.505146e-01	ci right 2.515271e-01	k: 707878	n:2820000
MUTYH   2820000 perm   3522 sec   (801 perm/sec)   p_kst 2.510206e-01   p_cons 2.164681e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 1.566632e-02	ci left: 2.147494e-02	ci right 2.181438e-02	k: 61253	n:2830000
KS ci ratio: 4.025113e-03	ci left: 2.505108e-01	ci right 2.515215e-01	k: 710375	n:2830000
MUTYH   2830000 perm   3546 sec   (798 perm/sec)   p_kst 2.510159e-01   p_cons 2.164417e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 1.563956e-02	ci left: 2.147298e-02	ci right 2.181180e-02	k: 61463	n:2840000
KS ci ratio: 4.018070e-03	ci left: 2.505071e-01	ci right 2.515160e-01	k: 712872	n:2840000
MUTYH   2840000 perm   3568 sec   (796 perm/sec)   p_kst 2.510113e-01   p_cons 2.164190e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 1.561590e-02	ci left: 2.146299e-02	ci right 2.180114e-02	k: 61650	n:2850000
KS ci ratio: 4.011157e-03	ci left: 2.504946e-01	ci right 2.515017e-01	k: 715344	n:2850000
MUTYH   2850000 perm   3591 sec   (794 perm/sec)   p_kst 2.509979e-01   p_cons 2.163158e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 1.558785e-02	ci left: 2.146527e-02	ci right 2.180284e-02	k: 61872	n:2860000
KS ci ratio: 4.004332e-03	ci left: 2.504773e-01	ci right 2.514826e-01	k: 717802	n:2860000
MUTYH   2860000 perm   3614 sec   (791 perm/sec)   p_kst 2.509797e-01   p_cons 2.163357e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 1.556263e-02	ci left: 2.146024e-02	ci right 2.179717e-02	k: 62073	n:2870000
KS ci ratio: 3.997282e-03	ci left: 2.504845e-01	ci right 2.514881e-01	k: 720330	n:2870000
MUTYH   2870000 perm   3637 sec   (789 perm/sec)   p_kst 2.509861e-01   p_cons 2.162822e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 1.553168e-02	ci left: 2.147115e-02	ci right 2.180759e-02	k: 62320	n:2880000
KS ci ratio: 3.990358e-03	ci left: 2.504834e-01	ci right 2.514852e-01	k: 722834	n:2880000
MUTYH   2880000 perm   3660 sec   (787 perm/sec)   p_kst 2.509840e-01   p_cons 2.163889e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 1.550610e-02	ci left: 2.146786e-02	ci right 2.180369e-02	k: 62526	n:2890000
KS ci ratio: 3.983540e-03	ci left: 2.504756e-01	ci right 2.514757e-01	k: 725319	n:2890000
MUTYH   2890000 perm   3683 sec   (785 perm/sec)   p_kst 2.509754e-01   p_cons 2.163529e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 1.548002e-02	ci left: 2.146631e-02	ci right 2.180154e-02	k: 62737	n:2900000
KS ci ratio: 3.976657e-03	ci left: 2.504773e-01	ci right 2.514756e-01	k: 727831	n:2900000
MUTYH   2900000 perm   3707 sec   (782 perm/sec)   p_kst 2.509762e-01   p_cons 2.163345e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 1.545444e-02	ci left: 2.146375e-02	ci right 2.179838e-02	k: 62945	n:2910000
KS ci ratio: 3.969622e-03	ci left: 2.504968e-01	ci right 2.514934e-01	k: 730395	n:2910000
MUTYH   2910000 perm   3731 sec   (780 perm/sec)   p_kst 2.509948e-01   p_cons 2.163058e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 1.542625e-02	ci left: 2.146870e-02	ci right 2.180279e-02	k: 63175	n:2920000
KS ci ratio: 3.962934e-03	ci left: 2.504867e-01	ci right 2.514816e-01	k: 732873	n:2920000
MUTYH   2920000 perm   3755 sec   (778 perm/sec)   p_kst 2.509839e-01   p_cons 2.163527e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 1.539945e-02	ci left: 2.147023e-02	ci right 2.180376e-02	k: 63395	n:2930000
KS ci ratio: 3.956215e-03	ci left: 2.504828e-01	ci right 2.514761e-01	k: 735369	n:2930000
MUTYH   2930000 perm   3779 sec   (775 perm/sec)   p_kst 2.509792e-01   p_cons 2.163652e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 1.537044e-02	ci left: 2.147818e-02	ci right 2.181120e-02	k: 63634	n:2940000
KS ci ratio: 3.949556e-03	ci left: 2.504766e-01	ci right 2.514681e-01	k: 737858	n:2940000
MUTYH   2940000 perm   3802 sec   (773 perm/sec)   p_kst 2.509721e-01   p_cons 2.164422e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 1.534430e-02	ci left: 2.147865e-02	ci right 2.181110e-02	k: 63851	n:2950000
KS ci ratio: 3.943058e-03	ci left: 2.504582e-01	ci right 2.514480e-01	k: 740311	n:2950000
MUTYH   2950000 perm   3825 sec   (771 perm/sec)   p_kst 2.509529e-01   p_cons 2.164441e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 1.532110e-02	ci left: 2.147138e-02	ci right 2.180321e-02	k: 64045	n:2960000
KS ci ratio: 3.936206e-03	ci left: 2.504768e-01	ci right 2.514649e-01	k: 742873	n:2960000
MUTYH   2960000 perm   3849 sec   (769 perm/sec)   p_kst 2.509706e-01   p_cons 2.163682e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 1.529484e-02	ci left: 2.147287e-02	ci right 2.180416e-02	k: 64265	n:2970000
KS ci ratio: 3.929608e-03	ci left: 2.504743e-01	ci right 2.514608e-01	k: 745373	n:2970000
MUTYH   2970000 perm   3873 sec   (767 perm/sec)   p_kst 2.509673e-01   p_cons 2.163805e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 1.527005e-02	ci left: 2.147068e-02	ci right 2.180139e-02	k: 64474	n:2980000
KS ci ratio: 3.923022e-03	ci left: 2.504739e-01	ci right 2.514588e-01	k: 747879	n:2980000
MUTYH   2980000 perm   3897 sec   (765 perm/sec)   p_kst 2.509661e-01   p_cons 2.163557e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 1.524478e-02	ci left: 2.147017e-02	ci right 2.180032e-02	k: 64688	n:2990000
KS ci ratio: 3.916239e-03	ci left: 2.504956e-01	ci right 2.514788e-01	k: 750451	n:2990000
MUTYH   2990000 perm   3920 sec   (763 perm/sec)   p_kst 2.509870e-01   p_cons 2.163478e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 1.521975e-02	ci left: 2.146933e-02	ci right 2.179892e-02	k: 64901	n:3000000
KS ci ratio: 3.909883e-03	ci left: 2.504795e-01	ci right 2.514610e-01	k: 752910	n:3000000
MUTYH   3000000 perm   3945 sec   (761 perm/sec)   p_kst 2.509700e-01   p_cons 2.163367e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 1.519700e-02	ci left: 2.146254e-02	ci right 2.179153e-02	k: 65096	n:3010000
KS ci ratio: 3.903440e-03	ci left: 2.504747e-01	ci right 2.514547e-01	k: 755403	n:3010000
MUTYH   3010000 perm   3969 sec   (758 perm/sec)   p_kst 2.509645e-01   p_cons 2.162658e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 1.516864e-02	ci left: 2.147164e-02	ci right 2.180014e-02	k: 65339	n:3020000
KS ci ratio: 3.896926e-03	ci left: 2.504800e-01	ci right 2.514583e-01	k: 757926	n:3020000
MUTYH   3020000 perm   3993 sec   (756 perm/sec)   p_kst 2.509689e-01   p_cons 2.163543e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 1.514281e-02	ci left: 2.147409e-02	ci right 2.180207e-02	k: 65562	n:3030000
KS ci ratio: 3.890547e-03	ci left: 2.504753e-01	ci right 2.514520e-01	k: 760419	n:3030000
MUTYH   3030000 perm   4018 sec   (754 perm/sec)   p_kst 2.509634e-01   p_cons 2.163762e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 1.511757e-02	ci left: 2.147522e-02	ci right 2.180267e-02	k: 65781	n:3040000
KS ci ratio: 3.884013e-03	ci left: 2.504887e-01	ci right 2.514638e-01	k: 762967	n:3040000
MUTYH   3040000 perm   4042 sec   (752 perm/sec)   p_kst 2.509760e-01   p_cons 2.163849e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 1.509305e-02	ci left: 2.147471e-02	ci right 2.180161e-02	k: 65995	n:3050000
KS ci ratio: 3.877305e-03	ci left: 2.505220e-01	ci right 2.514955e-01	k: 765576	n:3050000
MUTYH   3050000 perm   4066 sec   (750 perm/sec)   p_kst 2.510085e-01   p_cons 2.163770e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 1.507132e-02	ci left: 2.146671e-02	ci right 2.179302e-02	k: 66186	n:3060000
KS ci ratio: 3.870803e-03	ci left: 2.505384e-01	ci right 2.515104e-01	k: 768134	n:3060000
MUTYH   3060000 perm   4091 sec   (748 perm/sec)   p_kst 2.510242e-01   p_cons 2.162941e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 1.504598e-02	ci left: 2.146915e-02	ci right 2.179494e-02	k: 66409	n:3070000
KS ci ratio: 3.864448e-03	ci left: 2.505437e-01	ci right 2.515141e-01	k: 770658	n:3070000
MUTYH   3070000 perm   4116 sec   (746 perm/sec)   p_kst 2.510287e-01   p_cons 2.163160e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 1.502330e-02	ci left: 2.146446e-02	ci right 2.178969e-02	k: 66610	n:3080000
KS ci ratio: 3.858147e-03	ci left: 2.505467e-01	ci right 2.515155e-01	k: 773175	n:3080000
MUTYH   3080000 perm   4140 sec   (744 perm/sec)   p_kst 2.510308e-01   p_cons 2.162662e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 1.500187e-02	ci left: 2.145658e-02	ci right 2.178121e-02	k: 66801	n:3090000
KS ci ratio: 3.851721e-03	ci left: 2.505648e-01	ci right 2.515321e-01	k: 775739	n:3090000
MUTYH   3090000 perm   4165 sec   (742 perm/sec)   p_kst 2.510482e-01   p_cons 2.161845e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 1.497482e-02	ci left: 2.146481e-02	ci right 2.178898e-02	k: 67042	n:3100000
KS ci ratio: 3.845650e-03	ci left: 2.505513e-01	ci right 2.515170e-01	k: 778205	n:3100000
MUTYH   3100000 perm   4189 sec   (740 perm/sec)   p_kst 2.510339e-01   p_cons 2.162645e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 1.495098e-02	ci left: 2.146435e-02	ci right 2.178799e-02	k: 67256	n:3110000
KS ci ratio: 3.839506e-03	ci left: 2.505477e-01	ci right 2.515119e-01	k: 780702	n:3110000
MUTYH   3110000 perm   4214 sec   (738 perm/sec)   p_kst 2.510296e-01   p_cons 2.162572e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 1.492760e-02	ci left: 2.146293e-02	ci right 2.178604e-02	k: 67467	n:3120000
KS ci ratio: 3.833447e-03	ci left: 2.505388e-01	ci right 2.515014e-01	k: 783182	n:3120000
MUTYH   3120000 perm   4239 sec   (736 perm/sec)   p_kst 2.510199e-01   p_cons 2.162404e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 1.490612e-02	ci left: 2.145642e-02	ci right 2.177897e-02	k: 67662	n:3130000
KS ci ratio: 3.827056e-03	ci left: 2.505654e-01	ci right 2.515265e-01	k: 785773	n:3130000
MUTYH   3130000 perm   4264 sec   (734 perm/sec)   p_kst 2.510457e-01   p_cons 2.161725e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 1.488228e-02	ci left: 2.145694e-02	ci right 2.177897e-02	k: 67879	n:3140000
KS ci ratio: 3.820919e-03	ci left: 2.505698e-01	ci right 2.515294e-01	k: 788295	n:3140000
MUTYH   3140000 perm   4289 sec   (732 perm/sec)   p_kst 2.510494e-01   p_cons 2.161752e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 1.485754e-02	ci left: 2.146030e-02	ci right 2.178185e-02	k: 68105	n:3150000
KS ci ratio: 3.814816e-03	ci left: 2.505739e-01	ci right 2.515319e-01	k: 790816	n:3150000
MUTYH   3150000 perm   4315 sec   (730 perm/sec)   p_kst 2.510527e-01   p_cons 2.162063e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 1.483448e-02	ci left: 2.145923e-02	ci right 2.178025e-02	k: 68317	n:3160000
KS ci ratio: 3.808725e-03	ci left: 2.505796e-01	ci right 2.515361e-01	k: 793342	n:3160000
MUTYH   3160000 perm   4341 sec   (728 perm/sec)   p_kst 2.510576e-01   p_cons 2.161930e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 1.481009e-02	ci left: 2.146225e-02	ci right 2.178279e-02	k: 68542	n:3170000
KS ci ratio: 3.802610e-03	ci left: 2.505905e-01	ci right 2.515456e-01	k: 795885	n:3170000
MUTYH   3170000 perm   4365 sec   (726 perm/sec)   p_kst 2.510678e-01   p_cons 2.162208e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 1.478670e-02	ci left: 2.146275e-02	ci right 2.178278e-02	k: 68759	n:3180000
KS ci ratio: 3.796758e-03	ci left: 2.505782e-01	ci right 2.515317e-01	k: 798354	n:3180000
MUTYH   3180000 perm   4391 sec   (724 perm/sec)   p_kst 2.510547e-01   p_cons 2.162233e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 1.476484e-02	ci left: 2.145918e-02	ci right 2.177868e-02	k: 68963	n:3190000
KS ci ratio: 3.790877e-03	ci left: 2.505716e-01	ci right 2.515236e-01	k: 800841	n:3190000
MUTYH   3190000 perm   4416 sec   (722 perm/sec)   p_kst 2.510473e-01   p_cons 2.161850e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 1.474319e-02	ci left: 2.145532e-02	ci right 2.177430e-02	k: 69166	n:3200000
KS ci ratio: 3.784847e-03	ci left: 2.505825e-01	ci right 2.515330e-01	k: 803384	n:3200000
MUTYH   3200000 perm   4442 sec   (720 perm/sec)   p_kst 2.510575e-01   p_cons 2.161438e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 1.471957e-02	ci left: 2.145739e-02	ci right 2.177588e-02	k: 69388	n:3210000
KS ci ratio: 3.778821e-03	ci left: 2.505958e-01	ci right 2.515448e-01	k: 805935	n:3210000
MUTYH   3210000 perm   4467 sec   (719 perm/sec)   p_kst 2.510701e-01   p_cons 2.161620e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 1.469413e-02	ci left: 2.146501e-02	ci right 2.178306e-02	k: 69628	n:3220000
KS ci ratio: 3.773256e-03	ci left: 2.505659e-01	ci right 2.515134e-01	k: 808347	n:3220000
MUTYH   3220000 perm   4493 sec   (717 perm/sec)   p_kst 2.510394e-01   p_cons 2.162360e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 1.467236e-02	ci left: 2.146241e-02	ci right 2.177994e-02	k: 69835	n:3230000
KS ci ratio: 3.767548e-03	ci left: 2.505529e-01	ci right 2.514989e-01	k: 810813	n:3230000
MUTYH   3230000 perm   4519 sec   (715 perm/sec)   p_kst 2.510257e-01   p_cons 2.162074e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 1.465111e-02	ci left: 2.145859e-02	ci right 2.177560e-02	k: 70038	n:3240000
KS ci ratio: 3.761715e-03	ci left: 2.505551e-01	ci right 2.514997e-01	k: 813328	n:3240000
MUTYH   3240000 perm   4545 sec   (713 perm/sec)   p_kst 2.510272e-01   p_cons 2.161667e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 1.463027e-02	ci left: 2.145387e-02	ci right 2.177036e-02	k: 70238	n:3250000
KS ci ratio: 3.755727e-03	ci left: 2.505754e-01	ci right 2.515186e-01	k: 815902	n:3250000
MUTYH   3250000 perm   4571 sec   (711 perm/sec)   p_kst 2.510468e-01   p_cons 2.161169e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 1.460815e-02	ci left: 2.145316e-02	ci right 2.176916e-02	k: 70451	n:3260000
KS ci ratio: 3.749793e-03	ci left: 2.505932e-01	ci right 2.515349e-01	k: 818468	n:3260000
MUTYH   3260000 perm   4597 sec   (709 perm/sec)   p_kst 2.510638e-01   p_cons 2.161074e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 1.458623e-02	ci left: 2.145215e-02	ci right 2.176766e-02	k: 70663	n:3270000
KS ci ratio: 3.744209e-03	ci left: 2.505784e-01	ci right 2.515187e-01	k: 820928	n:3270000
MUTYH   3270000 perm   4623 sec   (707 perm/sec)   p_kst 2.510483e-01   p_cons 2.160948e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 1.456283e-02	ci left: 2.145570e-02	ci right 2.177075e-02	k: 70890	n:3280000
KS ci ratio: 3.738668e-03	ci left: 2.505619e-01	ci right 2.515007e-01	k: 823382	n:3280000
MUTYH   3280000 perm   4649 sec   (706 perm/sec)   p_kst 2.510311e-01   p_cons 2.161280e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 1.454122e-02	ci left: 2.145439e-02	ci right 2.176895e-02	k: 71101	n:3290000
KS ci ratio: 3.733025e-03	ci left: 2.505583e-01	ci right 2.514957e-01	k: 825878	n:3290000
MUTYH   3290000 perm   4675 sec   (704 perm/sec)   p_kst 2.510267e-01   p_cons 2.161125e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 1.452043e-02	ci left: 2.145097e-02	ci right 2.176502e-02	k: 71305	n:3300000
KS ci ratio: 3.727447e-03	ci left: 2.505507e-01	ci right 2.514867e-01	k: 828361	n:3300000
MUTYH   3300000 perm   4702 sec   (702 perm/sec)   p_kst 2.510185e-01   p_cons 2.160758e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 1.449838e-02	ci left: 2.145148e-02	ci right 2.176506e-02	k: 71522	n:3310000
KS ci ratio: 3.721929e-03	ci left: 2.505396e-01	ci right 2.514741e-01	k: 830832	n:3310000
MUTYH   3310000 perm   4728 sec   (700 perm/sec)   p_kst 2.510066e-01   p_cons 2.160785e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 1.447396e-02	ci left: 2.145920e-02	ci right 2.177236e-02	k: 71763	n:3320000
KS ci ratio: 3.716192e-03	ci left: 2.505532e-01	ci right 2.514864e-01	k: 833385	n:3320000
MUTYH   3320000 perm   4758 sec   (698 perm/sec)   p_kst 2.510196e-01   p_cons 2.161536e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 1.445223e-02	ci left: 2.145939e-02	ci right 2.177208e-02	k: 71979	n:3330000
KS ci ratio: 3.710478e-03	ci left: 2.505671e-01	ci right 2.514988e-01	k: 835939	n:3330000
MUTYH   3330000 perm   4785 sec   (696 perm/sec)   p_kst 2.510327e-01   p_cons 2.161532e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 1.443172e-02	ci left: 2.145629e-02	ci right 2.176849e-02	k: 72184	n:3340000
KS ci ratio: 3.704761e-03	ci left: 2.505838e-01	ci right 2.515142e-01	k: 838503	n:3340000
MUTYH   3340000 perm   4811 sec   (694 perm/sec)   p_kst 2.510488e-01   p_cons 2.161198e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 1.441129e-02	ci left: 2.145322e-02	ci right 2.176492e-02	k: 72389	n:3350000
KS ci ratio: 3.699220e-03	ci left: 2.505853e-01	ci right 2.515143e-01	k: 841016	n:3350000
MUTYH   3350000 perm   4838 sec   (692 perm/sec)   p_kst 2.510496e-01   p_cons 2.160866e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 1.438893e-02	ci left: 2.145609e-02	ci right 2.176735e-02	k: 72614	n:3360000
KS ci ratio: 3.693420e-03	ci left: 2.506156e-01	ci right 2.515432e-01	k: 843626	n:3360000
MUTYH   3360000 perm   4865 sec   (691 perm/sec)   p_kst 2.510792e-01   p_cons 2.161131e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 1.436677e-02	ci left: 2.145866e-02	ci right 2.176947e-02	k: 72838	n:3370000
KS ci ratio: 3.687845e-03	ci left: 2.506255e-01	ci right 2.515518e-01	k: 846168	n:3370000
MUTYH   3370000 perm   4891 sec   (689 perm/sec)   p_kst 2.510884e-01   p_cons 2.161365e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 1.434572e-02	ci left: 2.145825e-02	ci right 2.176860e-02	k: 73052	n:3380000
KS ci ratio: 3.682553e-03	ci left: 2.506091e-01	ci right 2.515339e-01	k: 848621	n:3380000
MUTYH   3380000 perm   4918 sec   (687 perm/sec)   p_kst 2.510713e-01   p_cons 2.161302e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 1.432505e-02	ci left: 2.145697e-02	ci right 2.176685e-02	k: 73263	n:3390000
KS ci ratio: 3.677267e-03	ci left: 2.505945e-01	ci right 2.515180e-01	k: 851080	n:3390000
MUTYH   3390000 perm   4944 sec   (686 perm/sec)   p_kst 2.510560e-01   p_cons 2.161150e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 1.430518e-02	ci left: 2.145365e-02	ci right 2.176305e-02	k: 73467	n:3400000
KS ci ratio: 3.671736e-03	ci left: 2.506074e-01	ci right 2.515295e-01	k: 853632	n:3400000
MUTYH   3400000 perm   4971 sec   (684 perm/sec)   p_kst 2.510682e-01   p_cons 2.160794e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 1.428598e-02	ci left: 2.144859e-02	ci right 2.175750e-02	k: 73665	n:3410000
KS ci ratio: 3.666365e-03	ci left: 2.506064e-01	ci right 2.515272e-01	k: 856137	n:3410000
MUTYH   3410000 perm   4998 sec   (682 perm/sec)   p_kst 2.510666e-01   p_cons 2.160264e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 1.426548e-02	ci left: 2.144765e-02	ci right 2.175609e-02	k: 73877	n:3420000
KS ci ratio: 3.660980e-03	ci left: 2.506092e-01	ci right 2.515286e-01	k: 858655	n:3420000
MUTYH   3420000 perm   5025 sec   (681 perm/sec)   p_kst 2.510687e-01   p_cons 2.160146e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 1.424506e-02	ci left: 2.144670e-02	ci right 2.175469e-02	k: 74089	n:3430000
KS ci ratio: 3.655760e-03	ci left: 2.505974e-01	ci right 2.515155e-01	k: 861123	n:3430000
MUTYH   3430000 perm   5052 sec   (679 perm/sec)   p_kst 2.510563e-01   p_cons 2.160029e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 1.422659e-02	ci left: 2.144026e-02	ci right 2.174775e-02	k: 74282	n:3440000
KS ci ratio: 3.650586e-03	ci left: 2.505834e-01	ci right 2.515001e-01	k: 863583	n:3440000
MUTYH   3440000 perm   5080 sec   (677 perm/sec)   p_kst 2.510416e-01   p_cons 2.159360e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 1.420517e-02	ci left: 2.144281e-02	ci right 2.174987e-02	k: 74506	n:3450000
KS ci ratio: 3.645287e-03	ci left: 2.505845e-01	ci right 2.514999e-01	k: 866095	n:3450000
MUTYH   3450000 perm   5108 sec   (675 perm/sec)   p_kst 2.510420e-01   p_cons 2.159594e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 1.418560e-02	ci left: 2.144017e-02	ci right 2.174676e-02	k: 74712	n:3460000
KS ci ratio: 3.640120e-03	ci left: 2.505744e-01	ci right 2.514885e-01	k: 868568	n:3460000
MUTYH   3460000 perm   5136 sec   (674 perm/sec)   p_kst 2.510312e-01   p_cons 2.159306e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 1.416755e-02	ci left: 2.143323e-02	ci right 2.173933e-02	k: 74903	n:3470000
KS ci ratio: 3.634863e-03	ci left: 2.505758e-01	ci right 2.514886e-01	k: 871081	n:3470000
MUTYH   3470000 perm   5163 sec   (672 perm/sec)   p_kst 2.510320e-01   p_cons 2.158588e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 1.414544e-02	ci left: 2.143864e-02	ci right 2.174434e-02	k: 75137	n:3480000
KS ci ratio: 3.629613e-03	ci left: 2.505790e-01	ci right 2.514904e-01	k: 873600	n:3480000
MUTYH   3480000 perm   5191 sec   (670 perm/sec)   p_kst 2.510345e-01   p_cons 2.159109e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 1.412745e-02	ci left: 2.143203e-02	ci right 2.173724e-02	k: 75329	n:3490000
KS ci ratio: 3.624300e-03	ci left: 2.505910e-01	ci right 2.515011e-01	k: 876150	n:3490000
MUTYH   3490000 perm   5219 sec   (669 perm/sec)   p_kst 2.510458e-01   p_cons 2.158424e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 1.410447e-02	ci left: 2.144055e-02	ci right 2.174538e-02	k: 75574	n:3500000
KS ci ratio: 3.619158e-03	ci left: 2.505875e-01	ci right 2.514963e-01	k: 878646	n:3500000
MUTYH   3500000 perm   5247 sec   (667 perm/sec)   p_kst 2.510417e-01   p_cons 2.159257e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 1.408474e-02	ci left: 2.143965e-02	ci right 2.174404e-02	k: 75786	n:3510000
KS ci ratio: 3.613863e-03	ci left: 2.506023e-01	ci right 2.515098e-01	k: 881206	n:3510000
MUTYH   3510000 perm   5275 sec   (665 perm/sec)   p_kst 2.510558e-01   p_cons 2.159145e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 1.406537e-02	ci left: 2.143791e-02	ci right 2.174186e-02	k: 75995	n:3520000
KS ci ratio: 3.608594e-03	ci left: 2.506167e-01	ci right 2.515229e-01	k: 883765	n:3520000
MUTYH   3520000 perm   5303 sec   (664 perm/sec)   p_kst 2.510696e-01   p_cons 2.158949e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 1.404665e-02	ci left: 2.143448e-02	ci right 2.173797e-02	k: 76198	n:3530000
KS ci ratio: 3.603489e-03	ci left: 2.506163e-01	ci right 2.515213e-01	k: 886272	n:3530000
MUTYH   3530000 perm   5333 sec   (662 perm/sec)   p_kst 2.510686e-01   p_cons 2.158584e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 1.402697e-02	ci left: 2.143417e-02	ci right 2.173723e-02	k: 76412	n:3540000
KS ci ratio: 3.598684e-03	ci left: 2.505868e-01	ci right 2.514905e-01	k: 888676	n:3540000
MUTYH   3540000 perm   5361 sec   (660 perm/sec)   p_kst 2.510384e-01   p_cons 2.158531e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 1.400550e-02	ci left: 2.143948e-02	ci right 2.174214e-02	k: 76646	n:3550000
KS ci ratio: 3.593411e-03	ci left: 2.506084e-01	ci right 2.515109e-01	k: 891261	n:3550000
MUTYH   3550000 perm   5389 sec   (659 perm/sec)   p_kst 2.510594e-01   p_cons 2.159042e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 1.398256e-02	ci left: 2.144952e-02	ci right 2.175182e-02	k: 76897	n:3560000
KS ci ratio: 3.588371e-03	ci left: 2.506081e-01	ci right 2.515092e-01	k: 893768	n:3560000
MUTYH   3560000 perm   5418 sec   (657 perm/sec)   p_kst 2.510584e-01   p_cons 2.160028e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 1.396324e-02	ci left: 2.144889e-02	ci right 2.175077e-02	k: 77110	n:3570000
KS ci ratio: 3.583180e-03	ci left: 2.506256e-01	ci right 2.515255e-01	k: 896339	n:3570000
MUTYH   3570000 perm   5446 sec   (655 perm/sec)   p_kst 2.510754e-01   p_cons 2.159944e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 1.394427e-02	ci left: 2.144743e-02	ci right 2.174887e-02	k: 77320	n:3580000
KS ci ratio: 3.578172e-03	ci left: 2.506263e-01	ci right 2.515249e-01	k: 898850	n:3580000
MUTYH   3580000 perm   5475 sec   (654 perm/sec)   p_kst 2.510754e-01   p_cons 2.159777e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 1.392319e-02	ci left: 2.145264e-02	ci right 2.175370e-02	k: 77554	n:3590000
KS ci ratio: 3.572993e-03	ci left: 2.506470e-01	ci right 2.515445e-01	k: 901433	n:3590000
MUTYH   3590000 perm   5503 sec   (652 perm/sec)   p_kst 2.510955e-01   p_cons 2.160279e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 1.390466e-02	ci left: 2.145035e-02	ci right 2.175097e-02	k: 77761	n:3600000
KS ci ratio: 3.568149e-03	ci left: 2.506349e-01	ci right 2.515311e-01	k: 903898	n:3600000
MUTYH   3600000 perm   5531 sec   (651 perm/sec)   p_kst 2.510828e-01   p_cons 2.160028e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 1.388694e-02	ci left: 2.144587e-02	ci right 2.174604e-02	k: 77960	n:3610000
KS ci ratio: 3.563192e-03	ci left: 2.506367e-01	ci right 2.515316e-01	k: 906413	n:3610000
MUTYH   3610000 perm   5560 sec   (649 perm/sec)   p_kst 2.510839e-01   p_cons 2.159557e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 1.386584e-02	ci left: 2.145187e-02	ci right 2.175166e-02	k: 78197	n:3620000
KS ci ratio: 3.558379e-03	ci left: 2.506255e-01	ci right 2.515191e-01	k: 908881	n:3620000
MUTYH   3620000 perm   5588 sec   (648 perm/sec)   p_kst 2.510721e-01   p_cons 2.160138e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 1.384393e-02	ci left: 2.146058e-02	ci right 2.176002e-02	k: 78444	n:3630000
KS ci ratio: 3.553455e-03	ci left: 2.506281e-01	ci right 2.515205e-01	k: 911399	n:3630000
MUTYH   3630000 perm   5617 sec   (646 perm/sec)   p_kst 2.510741e-01   p_cons 2.160992e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 1.382652e-02	ci left: 2.145583e-02	ci right 2.175482e-02	k: 78642	n:3640000
KS ci ratio: 3.548412e-03	ci left: 2.506455e-01	ci right 2.515367e-01	k: 913971	n:3640000
MUTYH   3640000 perm   5646 sec   (645 perm/sec)   p_kst 2.510909e-01   p_cons 2.160495e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 1.380722e-02	ci left: 2.145711e-02	ci right 2.175570e-02	k: 78862	n:3650000
KS ci ratio: 3.543571e-03	ci left: 2.506437e-01	ci right 2.515337e-01	k: 916473	n:3650000
MUTYH   3650000 perm   5674 sec   (643 perm/sec)   p_kst 2.510885e-01   p_cons 2.160603e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 1.378648e-02	ci left: 2.146302e-02	ci right 2.176124e-02	k: 79099	n:3660000
KS ci ratio: 3.538801e-03	ci left: 2.506364e-01	ci right 2.515252e-01	k: 918955	n:3660000
MUTYH   3660000 perm   5703 sec   (642 perm/sec)   p_kst 2.510806e-01   p_cons 2.161175e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 1.376672e-02	ci left: 2.146618e-02	ci right 2.176401e-02	k: 79326	n:3670000
KS ci ratio: 3.534061e-03	ci left: 2.506281e-01	ci right 2.515156e-01	k: 921433	n:3670000
MUTYH   3670000 perm   5732 sec   (640 perm/sec)   p_kst 2.510717e-01   p_cons 2.161471e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 1.374801e-02	ci left: 2.146634e-02	ci right 2.176376e-02	k: 79542	n:3680000
KS ci ratio: 3.529186e-03	ci left: 2.506361e-01	ci right 2.515225e-01	k: 923971	n:3680000
MUTYH   3680000 perm   5762 sec   (639 perm/sec)   p_kst 2.510791e-01   p_cons 2.161467e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 1.373000e-02	ci left: 2.146461e-02	ci right 2.176162e-02	k: 79751	n:3690000
KS ci ratio: 3.524512e-03	ci left: 2.506248e-01	ci right 2.515100e-01	k: 926438	n:3690000
MUTYH   3690000 perm   5791 sec   (637 perm/sec)   p_kst 2.510672e-01   p_cons 2.161274e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 1.371118e-02	ci left: 2.146558e-02	ci right 2.176220e-02	k: 79970	n:3700000
KS ci ratio: 3.519672e-03	ci left: 2.506334e-01	ci right 2.515173e-01	k: 928978	n:3700000
MUTYH   3700000 perm   5821 sec   (636 perm/sec)   p_kst 2.510751e-01   p_cons 2.161351e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 1.369218e-02	ci left: 2.146736e-02	ci right 2.176358e-02	k: 80192	n:3710000
KS ci ratio: 3.514937e-03	ci left: 2.506327e-01	ci right 2.515154e-01	k: 931484	n:3710000
MUTYH   3710000 perm   5850 sec   (634 perm/sec)   p_kst 2.510739e-01   p_cons 2.161509e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 1.367273e-02	ci left: 2.147073e-02	ci right 2.176658e-02	k: 80420	n:3720000
KS ci ratio: 3.510153e-03	ci left: 2.506392e-01	ci right 2.515208e-01	k: 934017	n:3720000
MUTYH   3720000 perm   5880 sec   (633 perm/sec)   p_kst 2.510798e-01   p_cons 2.161828e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 1.365458e-02	ci left: 2.147034e-02	ci right 2.176579e-02	k: 80634	n:3730000
KS ci ratio: 3.505310e-03	ci left: 2.506544e-01	ci right 2.515348e-01	k: 936582	n:3730000
MUTYH   3730000 perm   5910 sec   (631 perm/sec)   p_kst 2.510944e-01   p_cons 2.161769e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 1.363659e-02	ci left: 2.146969e-02	ci right 2.176474e-02	k: 80847	n:3740000
KS ci ratio: 3.500476e-03	ci left: 2.506705e-01	ci right 2.515497e-01	k: 939151	n:3740000
MUTYH   3740000 perm   5940 sec   (630 perm/sec)   p_kst 2.511099e-01   p_cons 2.161684e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 1.361944e-02	ci left: 2.146666e-02	ci right 2.176128e-02	k: 81051	n:3750000
KS ci ratio: 3.495719e-03	ci left: 2.506803e-01	ci right 2.515584e-01	k: 941697	n:3750000
MUTYH   3750000 perm   5970 sec   (628 perm/sec)   p_kst 2.511192e-01   p_cons 2.161360e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 1.360270e-02	ci left: 2.146257e-02	ci right 2.175678e-02	k: 81251	n:3760000
KS ci ratio: 3.490999e-03	ci left: 2.506883e-01	ci right 2.515653e-01	k: 944236	n:3760000
MUTYH   3760000 perm   6000 sec   (627 perm/sec)   p_kst 2.511266e-01   p_cons 2.160931e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 1.358644e-02	ci left: 2.145719e-02	ci right 2.175097e-02	k: 81446	n:3770000
KS ci ratio: 3.486479e-03	ci left: 2.506766e-01	ci right 2.515524e-01	k: 946701	n:3770000
MUTYH   3770000 perm   6031 sec   (625 perm/sec)   p_kst 2.511143e-01   p_cons 2.160371e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 1.356668e-02	ci left: 2.146291e-02	ci right 2.175634e-02	k: 81683	n:3780000
KS ci ratio: 3.481894e-03	ci left: 2.506740e-01	ci right 2.515486e-01	k: 949200	n:3780000
MUTYH   3780000 perm   6061 sec   (624 perm/sec)   p_kst 2.511111e-01   p_cons 2.160926e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 1.354802e-02	ci left: 2.146545e-02	ci right 2.175850e-02	k: 81908	n:3790000
KS ci ratio: 3.477283e-03	ci left: 2.506761e-01	ci right 2.515496e-01	k: 951717	n:3790000
MUTYH   3790000 perm   6091 sec   (622 perm/sec)   p_kst 2.511127e-01   p_cons 2.161161e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 1.353044e-02	ci left: 2.146482e-02	ci right 2.175749e-02	k: 82121	n:3800000
KS ci ratio: 3.472824e-03	ci left: 2.506638e-01	ci right 2.515361e-01	k: 954179	n:3800000
MUTYH   3800000 perm   6122 sec   (621 perm/sec)   p_kst 2.510997e-01   p_cons 2.161079e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 1.351117e-02	ci left: 2.146969e-02	ci right 2.176200e-02	k: 82355	n:3810000
KS ci ratio: 3.468242e-03	ci left: 2.506667e-01	ci right 2.515379e-01	k: 956699	n:3810000
MUTYH   3810000 perm   6152 sec   (619 perm/sec)   p_kst 2.511021e-01   p_cons 2.161549e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 1.349483e-02	ci left: 2.146567e-02	ci right 2.175757e-02	k: 82555	n:3820000
KS ci ratio: 3.463557e-03	ci left: 2.506827e-01	ci right 2.515527e-01	k: 959269	n:3820000
MUTYH   3820000 perm   6183 sec   (618 perm/sec)   p_kst 2.511175e-01   p_cons 2.161126e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 1.347854e-02	ci left: 2.146167e-02	ci right 2.175316e-02	k: 82755	n:3830000
KS ci ratio: 3.459213e-03	ci left: 2.506637e-01	ci right 2.515325e-01	k: 961705	n:3830000
MUTYH   3830000 perm   6213 sec   (616 perm/sec)   p_kst 2.510979e-01   p_cons 2.160705e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 1.346115e-02	ci left: 2.146132e-02	ci right 2.175242e-02	k: 82969	n:3840000
KS ci ratio: 3.454601e-03	ci left: 2.506757e-01	ci right 2.515434e-01	k: 964260	n:3840000
MUTYH   3840000 perm   6244 sec   (615 perm/sec)   p_kst 2.511094e-01   p_cons 2.160651e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 1.344325e-02	ci left: 2.146278e-02	ci right 2.175352e-02	k: 83190	n:3850000
KS ci ratio: 3.450247e-03	ci left: 2.506614e-01	ci right 2.515280e-01	k: 966714	n:3850000
MUTYH   3850000 perm   6274 sec   (614 perm/sec)   p_kst 2.510945e-01   p_cons 2.160779e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 1.342814e-02	ci left: 2.145572e-02	ci right 2.174603e-02	k: 83378	n:3860000
KS ci ratio: 3.445835e-03	ci left: 2.506555e-01	ci right 2.515210e-01	k: 969200	n:3860000
MUTYH   3860000 perm   6305 sec   (612 perm/sec)   p_kst 2.510881e-01   p_cons 2.160052e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 1.341217e-02	ci left: 2.145153e-02	ci right 2.174144e-02	k: 83577	n:3870000
KS ci ratio: 3.441368e-03	ci left: 2.506574e-01	ci right 2.515218e-01	k: 971716	n:3870000
MUTYH   3870000 perm   6336 sec   (611 perm/sec)   p_kst 2.510894e-01   p_cons 2.159612e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 1.339700e-02	ci left: 2.144505e-02	ci right 2.173453e-02	k: 83767	n:3880000
KS ci ratio: 3.436824e-03	ci left: 2.506696e-01	ci right 2.515328e-01	k: 974272	n:3880000
MUTYH   3880000 perm   6367 sec   (609 perm/sec)   p_kst 2.511010e-01   p_cons 2.158943e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 1.338130e-02	ci left: 2.144039e-02	ci right 2.172947e-02	k: 83964	n:3890000
KS ci ratio: 3.432368e-03	ci left: 2.506740e-01	ci right 2.515361e-01	k: 976798	n:3890000
MUTYH   3890000 perm   6398 sec   (608 perm/sec)   p_kst 2.511049e-01   p_cons 2.158458e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 1.336194e-02	ci left: 2.144751e-02	ci right 2.173627e-02	k: 84207	n:3900000
KS ci ratio: 3.428051e-03	ci left: 2.506651e-01	ci right 2.515261e-01	k: 979272	n:3900000
MUTYH   3900000 perm   6429 sec   (607 perm/sec)   p_kst 2.510954e-01   p_cons 2.159154e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 1.334483e-02	ci left: 2.144772e-02	ci right 2.173611e-02	k: 84423	n:3910000
KS ci ratio: 3.423639e-03	ci left: 2.506684e-01	ci right 2.515283e-01	k: 981794	n:3910000
MUTYH   3910000 perm   6460 sec   (605 perm/sec)   p_kst 2.510982e-01   p_cons 2.159156e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 1.332811e-02	ci left: 2.144691e-02	ci right 2.173492e-02	k: 84635	n:3920000
KS ci ratio: 3.419191e-03	ci left: 2.506777e-01	ci right 2.515365e-01	k: 984339	n:3920000
MUTYH   3920000 perm   6492 sec   (604 perm/sec)   p_kst 2.511069e-01   p_cons 2.159056e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 1.331346e-02	ci left: 2.143976e-02	ci right 2.172736e-02	k: 84822	n:3930000
KS ci ratio: 3.414905e-03	ci left: 2.506708e-01	ci right 2.515285e-01	k: 986821	n:3930000
MUTYH   3930000 perm   6523 sec   (603 perm/sec)   p_kst 2.510995e-01   p_cons 2.158321e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 1.329695e-02	ci left: 2.143872e-02	ci right 2.172594e-02	k: 85033	n:3940000
KS ci ratio: 3.410557e-03	ci left: 2.506726e-01	ci right 2.515293e-01	k: 989337	n:3940000
MUTYH   3940000 perm   6553 sec   (601 perm/sec)   p_kst 2.511008e-01   p_cons 2.158198e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 1.327977e-02	ci left: 2.143996e-02	ci right 2.172682e-02	k: 85253	n:3950000
KS ci ratio: 3.405935e-03	ci left: 2.507066e-01	ci right 2.515622e-01	k: 991980	n:3950000
MUTYH   3950000 perm   6584 sec   (600 perm/sec)   p_kst 2.511342e-01   p_cons 2.158304e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 1.326084e-02	ci left: 2.144697e-02	ci right 2.173352e-02	k: 85496	n:3960000
KS ci ratio: 3.401516e-03	ci left: 2.507199e-01	ci right 2.515744e-01	k: 994542	n:3960000
MUTYH   3960000 perm   6615 sec   (599 perm/sec)   p_kst 2.511470e-01   p_cons 2.158990e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 1.324459e-02	ci left: 2.144567e-02	ci right 2.173185e-02	k: 85706	n:3970000
KS ci ratio: 3.397289e-03	ci left: 2.507138e-01	ci right 2.515672e-01	k: 997027	n:3970000
MUTYH   3970000 perm   6647 sec   (597 perm/sec)   p_kst 2.511403e-01   p_cons 2.158841e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 1.322699e-02	ci left: 2.144889e-02	ci right 2.173472e-02	k: 85934	n:3980000
KS ci ratio: 3.393088e-03	ci left: 2.507067e-01	ci right 2.515590e-01	k: 999508	n:3980000
MUTYH   3980000 perm   6678 sec   (596 perm/sec)   p_kst 2.511327e-01   p_cons 2.159146e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 1.321040e-02	ci left: 2.144909e-02	ci right 2.173457e-02	k: 86150	n:3990000
KS ci ratio: 3.389023e-03	ci left: 2.506861e-01	ci right 2.515373e-01	k: 1001935	n:3990000
MUTYH   3990000 perm   6709 sec   (595 perm/sec)   p_kst 2.511115e-01   p_cons 2.159148e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 1.319301e-02	ci left: 2.145203e-02	ci right 2.173717e-02	k: 86377	n:4000000
KS ci ratio: 3.384940e-03	ci left: 2.506693e-01	ci right 2.515195e-01	k: 1004377	n:4000000
MUTYH   4000000 perm   6740 sec   (593 perm/sec)   p_kst 2.510943e-01   p_cons 2.159425e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 1.317577e-02	ci left: 2.145470e-02	ci right 2.173950e-02	k: 86603	n:4010000
KS ci ratio: 3.380703e-03	ci left: 2.506714e-01	ci right 2.515205e-01	k: 1006894	n:4010000
MUTYH   4010000 perm   6772 sec   (592 perm/sec)   p_kst 2.510958e-01   p_cons 2.159676e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 1.315991e-02	ci left: 2.145315e-02	ci right 2.173759e-02	k: 86812	n:4020000
KS ci ratio: 3.376621e-03	ci left: 2.506580e-01	ci right 2.515060e-01	k: 1009349	n:4020000
MUTYH   4020000 perm   6804 sec   (591 perm/sec)   p_kst 2.510818e-01   p_cons 2.159502e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 1.314249e-02	ci left: 2.145680e-02	ci right 2.174091e-02	k: 87042	n:4030000
KS ci ratio: 3.372306e-03	ci left: 2.506722e-01	ci right 2.515192e-01	k: 1011915	n:4030000
MUTYH   4030000 perm   6835 sec   (590 perm/sec)   p_kst 2.510955e-01   p_cons 2.159851e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 1.312613e-02	ci left: 2.145723e-02	ci right 2.174098e-02	k: 87259	n:4040000
KS ci ratio: 3.368070e-03	ci left: 2.506794e-01	ci right 2.515254e-01	k: 1014453	n:4040000
MUTYH   4040000 perm   6868 sec   (588 perm/sec)   p_kst 2.511022e-01   p_cons 2.159876e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 1.311068e-02	ci left: 2.145495e-02	ci right 2.173833e-02	k: 87465	n:4050000
KS ci ratio: 3.364017e-03	ci left: 2.506678e-01	ci right 2.515128e-01	k: 1016915	n:4050000
MUTYH   4050000 perm   6899 sec   (587 perm/sec)   p_kst 2.510901e-01   p_cons 2.159630e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 1.309315e-02	ci left: 2.145955e-02	ci right 2.174261e-02	k: 87699	n:4060000
KS ci ratio: 3.360072e-03	ci left: 2.506460e-01	ci right 2.514898e-01	k: 1019335	n:4060000
MUTYH   4060000 perm   6932 sec   (586 perm/sec)   p_kst 2.510677e-01   p_cons 2.160074e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 1.307683e-02	ci left: 2.146045e-02	ci right 2.174318e-02	k: 87918	n:4070000
KS ci ratio: 3.355879e-03	ci left: 2.506535e-01	ci right 2.514963e-01	k: 1021874	n:4070000
MUTYH   4070000 perm   6963 sec   (584 perm/sec)   p_kst 2.510747e-01   p_cons 2.160147e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 1.306269e-02	ci left: 2.145452e-02	ci right 2.173685e-02	k: 88109	n:4080000
KS ci ratio: 3.351751e-03	ci left: 2.506555e-01	ci right 2.514973e-01	k: 1024391	n:4080000
MUTYH   4080000 perm   6995 sec   (583 perm/sec)   p_kst 2.510762e-01   p_cons 2.159534e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 1.304633e-02	ci left: 2.145592e-02	ci right 2.173791e-02	k: 88330	n:4090000
KS ci ratio: 3.347493e-03	ci left: 2.506737e-01	ci right 2.515144e-01	k: 1026974	n:4090000
MUTYH   4090000 perm   7027 sec   (582 perm/sec)   p_kst 2.510939e-01   p_cons 2.159658e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 1.302883e-02	ci left: 2.146120e-02	ci right 2.174289e-02	k: 88567	n:4100000
KS ci ratio: 3.343437e-03	ci left: 2.506710e-01	ci right 2.515108e-01	k: 1029472	n:4100000
MUTYH   4100000 perm   7059 sec   (581 perm/sec)   p_kst 2.510907e-01   p_cons 2.160171e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 1.301387e-02	ci left: 2.145846e-02	ci right 2.173978e-02	k: 88771	n:4110000
KS ci ratio: 3.339483e-03	ci left: 2.506584e-01	ci right 2.514971e-01	k: 1031929	n:4110000
MUTYH   4110000 perm   7091 sec   (580 perm/sec)   p_kst 2.510776e-01   p_cons 2.159878e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 1.299739e-02	ci left: 2.146081e-02	ci right 2.174181e-02	k: 88996	n:4120000
KS ci ratio: 3.335354e-03	ci left: 2.506673e-01	ci right 2.515049e-01	k: 1034474	n:4120000
MUTYH   4120000 perm   7123 sec   (578 perm/sec)   p_kst 2.510859e-01   p_cons 2.160097e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 1.298150e-02	ci left: 2.146146e-02	ci right 2.174212e-02	k: 89214	n:4130000
KS ci ratio: 3.331434e-03	ci left: 2.506542e-01	ci right 2.514909e-01	k: 1036929	n:4130000
MUTYH   4130000 perm   7155 sec   (577 perm/sec)   p_kst 2.510724e-01   p_cons 2.160145e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 1.296567e-02	ci left: 2.146211e-02	ci right 2.174243e-02	k: 89432	n:4140000
KS ci ratio: 3.327341e-03	ci left: 2.506623e-01	ci right 2.514980e-01	k: 1039471	n:4140000
MUTYH   4140000 perm   7187 sec   (576 perm/sec)   p_kst 2.510800e-01   p_cons 2.160193e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 1.294945e-02	ci left: 2.146419e-02	ci right 2.174419e-02	k: 89656	n:4150000
KS ci ratio: 3.323261e-03	ci left: 2.506706e-01	ci right 2.515052e-01	k: 1042014	n:4150000
MUTYH   4150000 perm   7220 sec   (575 perm/sec)   p_kst 2.510877e-01   p_cons 2.160386e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 1.293469e-02	ci left: 2.146171e-02	ci right 2.174136e-02	k: 89861	n:4160000
KS ci ratio: 3.319421e-03	ci left: 2.506533e-01	ci right 2.514869e-01	k: 1044451	n:4160000
MUTYH   4160000 perm   7253 sec   (574 perm/sec)   p_kst 2.510700e-01   p_cons 2.160120e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 1.291822e-02	ci left: 2.146499e-02	ci right 2.174431e-02	k: 90090	n:4170000
KS ci ratio: 3.315548e-03	ci left: 2.506414e-01	ci right 2.514740e-01	k: 1046910	n:4170000
MUTYH   4170000 perm   7285 sec   (572 perm/sec)   p_kst 2.510576e-01   p_cons 2.160432e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 1.290122e-02	ci left: 2.147015e-02	ci right 2.174917e-02	k: 90327	n:4180000
KS ci ratio: 3.311522e-03	ci left: 2.506485e-01	ci right 2.514801e-01	k: 1049448	n:4180000
MUTYH   4180000 perm   7318 sec   (571 perm/sec)   p_kst 2.510641e-01   p_cons 2.160933e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 1.288663e-02	ci left: 2.146768e-02	ci right 2.174635e-02	k: 90532	n:4190000
KS ci ratio: 3.307443e-03	ci left: 2.506631e-01	ci right 2.514938e-01	k: 1052018	n:4190000
MUTYH   4190000 perm   7350 sec   (570 perm/sec)   p_kst 2.510783e-01   p_cons 2.160668e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 1.286896e-02	ci left: 2.147542e-02	ci right 2.175381e-02	k: 90780	n:4200000
KS ci ratio: 3.303574e-03	ci left: 2.506556e-01	ci right 2.514852e-01	k: 1054495	n:4200000
MUTYH   4200000 perm   7383 sec   (569 perm/sec)   p_kst 2.510702e-01   p_cons 2.161429e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 1.285397e-02	ci left: 2.147461e-02	ci right 2.175266e-02	k: 90992	n:4210000
KS ci ratio: 3.299691e-03	ci left: 2.506512e-01	ci right 2.514798e-01	k: 1056985	n:4210000
MUTYH   4210000 perm   7416 sec   (568 perm/sec)   p_kst 2.510653e-01   p_cons 2.161330e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 1.283960e-02	ci left: 2.147190e-02	ci right 2.174961e-02	k: 91196	n:4220000
KS ci ratio: 3.295822e-03	ci left: 2.506468e-01	ci right 2.514744e-01	k: 1059475	n:4220000
MUTYH   4220000 perm   7449 sec   (567 perm/sec)   p_kst 2.510604e-01   p_cons 2.161043e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 1.282299e-02	ci left: 2.147676e-02	ci right 2.175416e-02	k: 91432	n:4230000
KS ci ratio: 3.291876e-03	ci left: 2.506528e-01	ci right 2.514795e-01	k: 1062009	n:4230000
MUTYH   4230000 perm   7482 sec   (565 perm/sec)   p_kst 2.510660e-01   p_cons 2.161513e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 1.280687e-02	ci left: 2.148017e-02	ci right 2.175727e-02	k: 91662	n:4240000
KS ci ratio: 3.287919e-03	ci left: 2.506616e-01	ci right 2.514873e-01	k: 1064555	n:4240000
MUTYH   4240000 perm   7516 sec   (564 perm/sec)   p_kst 2.510743e-01   p_cons 2.161840e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 1.279010e-02	ci left: 2.148592e-02	ci right 2.176273e-02	k: 91902	n:4250000
KS ci ratio: 3.284112e-03	ci left: 2.506549e-01	ci right 2.514796e-01	k: 1067035	n:4250000
MUTYH   4250000 perm   7549 sec   (563 perm/sec)   p_kst 2.510671e-01   p_cons 2.162400e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 1.277616e-02	ci left: 2.148252e-02	ci right 2.175898e-02	k: 92103	n:4260000
KS ci ratio: 3.280219e-03	ci left: 2.506594e-01	ci right 2.514832e-01	k: 1069563	n:4260000
MUTYH   4260000 perm   7583 sec   (562 perm/sec)   p_kst 2.510711e-01   p_cons 2.162042e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 1.276100e-02	ci left: 2.148333e-02	ci right 2.175947e-02	k: 92322	n:4270000
KS ci ratio: 3.276186e-03	ci left: 2.506817e-01	ci right 2.515046e-01	k: 1072167	n:4270000
MUTYH   4270000 perm   7616 sec   (561 perm/sec)   p_kst 2.510930e-01   p_cons 2.162108e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 1.274638e-02	ci left: 2.148251e-02	ci right 2.175832e-02	k: 92534	n:4280000
KS ci ratio: 3.272405e-03	ci left: 2.506766e-01	ci right 2.514985e-01	k: 1074654	n:4280000
MUTYH   4280000 perm   7650 sec   (559 perm/sec)   p_kst 2.510874e-01   p_cons 2.162009e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 1.273209e-02	ci left: 2.148077e-02	ci right 2.175624e-02	k: 92742	n:4290000
KS ci ratio: 3.268594e-03	ci left: 2.506764e-01	ci right 2.514973e-01	k: 1077162	n:4290000
MUTYH   4290000 perm   7683 sec   (558 perm/sec)   p_kst 2.510867e-01   p_cons 2.161818e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 1.271757e-02	ci left: 2.147996e-02	ci right 2.175511e-02	k: 92954	n:4300000
KS ci ratio: 3.264874e-03	ci left: 2.506674e-01	ci right 2.514874e-01	k: 1079632	n:4300000
MUTYH   4300000 perm   7717 sec   (557 perm/sec)   p_kst 2.510772e-01   p_cons 2.161721e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 1.270226e-02	ci left: 2.148193e-02	ci right 2.175677e-02	k: 93178	n:4310000
KS ci ratio: 3.261184e-03	ci left: 2.506563e-01	ci right 2.514753e-01	k: 1082093	n:4310000
MUTYH   4310000 perm   7751 sec   (556 perm/sec)   p_kst 2.510657e-01   p_cons 2.161903e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 1.268603e-02	ci left: 2.148712e-02	ci right 2.176167e-02	k: 93416	n:4320000
KS ci ratio: 3.257481e-03	ci left: 2.506483e-01	ci right 2.514664e-01	k: 1084567	n:4320000
MUTYH   4320000 perm   7784 sec   (555 perm/sec)   p_kst 2.510572e-01   p_cons 2.162407e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 1.267126e-02	ci left: 2.148768e-02	ci right 2.176192e-02	k: 93634	n:4330000
KS ci ratio: 3.253767e-03	ci left: 2.506431e-01	ci right 2.514602e-01	k: 1087053	n:4330000
MUTYH   4330000 perm   7820 sec   (554 perm/sec)   p_kst 2.510515e-01   p_cons 2.162448e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 1.265618e-02	ci left: 2.148939e-02	ci right 2.176332e-02	k: 93857	n:4340000
KS ci ratio: 3.249959e-03	ci left: 2.506502e-01	ci right 2.514663e-01	k: 1089592	n:4340000
MUTYH   4340000 perm   7854 sec   (553 perm/sec)   p_kst 2.510581e-01   p_cons 2.162604e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 1.264295e-02	ci left: 2.148513e-02	ci right 2.175872e-02	k: 94054	n:4350000
KS ci ratio: 3.246278e-03	ci left: 2.506441e-01	ci right 2.514593e-01	k: 1092074	n:4350000
MUTYH   4350000 perm   7888 sec   (551 perm/sec)   p_kst 2.510515e-01   p_cons 2.162161e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 1.262723e-02	ci left: 2.148936e-02	ci right 2.176266e-02	k: 94288	n:4360000
KS ci ratio: 3.242416e-03	ci left: 2.506605e-01	ci right 2.514747e-01	k: 1094654	n:4360000
MUTYH   4360000 perm   7922 sec   (550 perm/sec)   p_kst 2.510674e-01   p_cons 2.162569e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 1.261306e-02	ci left: 2.148854e-02	ci right 2.176152e-02	k: 94500	n:4370000
KS ci ratio: 3.238853e-03	ci left: 2.506436e-01	ci right 2.514569e-01	k: 1097089	n:4370000
MUTYH   4370000 perm   7957 sec   (549 perm/sec)   p_kst 2.510501e-01   p_cons 2.162471e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 1.259901e-02	ci left: 2.148750e-02	ci right 2.176016e-02	k: 94711	n:4380000
KS ci ratio: 3.235212e-03	ci left: 2.506373e-01	ci right 2.514497e-01	k: 1099570	n:4380000
MUTYH   4380000 perm   7991 sec   (548 perm/sec)   p_kst 2.510434e-01   p_cons 2.162352e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 1.258338e-02	ci left: 2.149192e-02	ci right 2.176429e-02	k: 94946	n:4390000
KS ci ratio: 3.231576e-03	ci left: 2.506318e-01	ci right 2.514433e-01	k: 1102054	n:4390000
MUTYH   4390000 perm   8025 sec   (547 perm/sec)   p_kst 2.510374e-01   p_cons 2.162779e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 1.257132e-02	ci left: 2.148453e-02	ci right 2.175655e-02	k: 95129	n:4400000
KS ci ratio: 3.227961e-03	ci left: 2.506254e-01	ci right 2.514359e-01	k: 1104534	n:4400000
MUTYH   4400000 perm   8059 sec   (546 perm/sec)   p_kst 2.510305e-01   p_cons 2.162023e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 1.255829e-02	ci left: 2.148057e-02	ci right 2.175226e-02	k: 95327	n:4410000
KS ci ratio: 3.224261e-03	ci left: 2.506303e-01	ci right 2.514399e-01	k: 1107064	n:4410000
MUTYH   4410000 perm   8094 sec   (545 perm/sec)   p_kst 2.510349e-01   p_cons 2.161610e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 1.254314e-02	ci left: 2.148385e-02	ci right 2.175524e-02	k: 95557	n:4420000
KS ci ratio: 3.220483e-03	ci left: 2.506458e-01	ci right 2.514545e-01	k: 1109641	n:4420000
MUTYH   4420000 perm   8129 sec   (544 perm/sec)   p_kst 2.510500e-01   p_cons 2.161923e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 1.253013e-02	ci left: 2.148013e-02	ci right 2.175120e-02	k: 95756	n:4430000
KS ci ratio: 3.216837e-03	ci left: 2.506473e-01	ci right 2.514551e-01	k: 1112156	n:4430000
MUTYH   4430000 perm   8163 sec   (543 perm/sec)   p_kst 2.510510e-01   p_cons 2.161535e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 1.251689e-02	ci left: 2.147733e-02	ci right 2.174807e-02	k: 95959	n:4440000
KS ci ratio: 3.213111e-03	ci left: 2.506595e-01	ci right 2.514665e-01	k: 1114719	n:4440000
MUTYH   4440000 perm   8199 sec   (542 perm/sec)   p_kst 2.510628e-01   p_cons 2.161239e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 1.249950e-02	ci left: 2.148865e-02	ci right 2.175916e-02	k: 96225	n:4450000
KS ci ratio: 3.209656e-03	ci left: 2.506417e-01	ci right 2.514476e-01	k: 1117148	n:4450000
MUTYH   4450000 perm   8234 sec   (540 perm/sec)   p_kst 2.510445e-01   p_cons 2.162360e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 1.248550e-02	ci left: 2.148875e-02	ci right 2.175895e-02	k: 96441	n:4460000
KS ci ratio: 3.205997e-03	ci left: 2.506490e-01	ci right 2.514540e-01	k: 1119689	n:4460000
MUTYH   4460000 perm   8269 sec   (539 perm/sec)   p_kst 2.510513e-01   p_cons 2.162354e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 1.247246e-02	ci left: 2.148573e-02	ci right 2.175561e-02	k: 96643	n:4470000
KS ci ratio: 3.202351e-03	ci left: 2.506562e-01	ci right 2.514604e-01	k: 1122230	n:4470000
MUTYH   4470000 perm   8304 sec   (538 perm/sec)   p_kst 2.510582e-01   p_cons 2.162036e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 1.245842e-02	ci left: 2.148628e-02	ci right 2.175586e-02	k: 96861	n:4480000
KS ci ratio: 3.198793e-03	ci left: 2.506545e-01	ci right 2.514578e-01	k: 1124731	n:4480000
MUTYH   4480000 perm   8340 sec   (537 perm/sec)   p_kst 2.510560e-01   p_cons 2.162076e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 1.244435e-02	ci left: 2.148705e-02	ci right 2.175633e-02	k: 97080	n:4490000
KS ci ratio: 3.195270e-03	ci left: 2.506502e-01	ci right 2.514526e-01	k: 1127220	n:4490000
MUTYH   4490000 perm   8376 sec   (536 perm/sec)   p_kst 2.510512e-01   p_cons 2.162138e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 1.243288e-02	ci left: 2.147917e-02	ci right 2.174811e-02	k: 97260	n:4500000
KS ci ratio: 3.191777e-03	ci left: 2.506436e-01	ci right 2.514451e-01	k: 1129699	n:4500000
MUTYH   4500000 perm   8411 sec   (535 perm/sec)   p_kst 2.510442e-01   p_cons 2.161333e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 1.241832e-02	ci left: 2.148195e-02	ci right 2.175060e-02	k: 97488	n:4510000
KS ci ratio: 3.188222e-03	ci left: 2.506458e-01	ci right 2.514464e-01	k: 1132217	n:4510000
MUTYH   4510000 perm   8447 sec   (534 perm/sec)   p_kst 2.510459e-01   p_cons 2.161596e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 1.240543e-02	ci left: 2.147919e-02	ci right 2.174753e-02	k: 97691	n:4520000
KS ci ratio: 3.184597e-03	ci left: 2.506576e-01	ci right 2.514573e-01	k: 1134779	n:4520000
MUTYH   4520000 perm   8481 sec   (533 perm/sec)   p_kst 2.510573e-01   p_cons 2.161305e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 1.239032e-02	ci left: 2.148415e-02	ci right 2.175222e-02	k: 97929	n:4530000
KS ci ratio: 3.181045e-03	ci left: 2.506621e-01	ci right 2.514609e-01	k: 1137308	n:4530000
MUTYH   4530000 perm   8517 sec   (532 perm/sec)   p_kst 2.510614e-01   p_cons 2.161788e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 1.237642e-02	ci left: 2.148514e-02	ci right 2.175292e-02	k: 98149	n:4540000
KS ci ratio: 3.177539e-03	ci left: 2.506626e-01	ci right 2.514606e-01	k: 1139819	n:4540000
MUTYH   4540000 perm   8553 sec   (531 perm/sec)   p_kst 2.510615e-01   p_cons 2.161872e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 1.236462e-02	ci left: 2.147911e-02	ci right 2.174656e-02	k: 98337	n:4550000
KS ci ratio: 3.173978e-03	ci left: 2.506711e-01	ci right 2.514682e-01	k: 1142366	n:4550000
MUTYH   4550000 perm   8589 sec   (530 perm/sec)   p_kst 2.510695e-01   p_cons 2.161253e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 1.235106e-02	ci left: 2.147923e-02	ci right 2.174638e-02	k: 98553	n:4560000
KS ci ratio: 3.170494e-03	ci left: 2.506718e-01	ci right 2.514680e-01	k: 1144878	n:4560000
MUTYH   4560000 perm   8625 sec   (529 perm/sec)   p_kst 2.510697e-01   p_cons 2.161250e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 1.233800e-02	ci left: 2.147782e-02	ci right 2.174467e-02	k: 98762	n:4570000
KS ci ratio: 3.166963e-03	ci left: 2.506793e-01	ci right 2.514746e-01	k: 1147421	n:4570000
MUTYH   4570000 perm   8662 sec   (528 perm/sec)   p_kst 2.510768e-01   p_cons 2.161094e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 1.232586e-02	ci left: 2.147337e-02	ci right 2.173990e-02	k: 98957	n:4580000
KS ci ratio: 3.163544e-03	ci left: 2.506750e-01	ci right 2.514695e-01	k: 1149910	n:4580000
MUTYH   4580000 perm   8698 sec   (527 perm/sec)   p_kst 2.510721e-01   p_cons 2.160633e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 1.231313e-02	ci left: 2.147111e-02	ci right 2.173734e-02	k: 99162	n:4590000
KS ci ratio: 3.160050e-03	ci left: 2.506809e-01	ci right 2.514745e-01	k: 1152446	n:4590000
MUTYH   4590000 perm   8735 sec   (525 perm/sec)   p_kst 2.510776e-01   p_cons 2.160392e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 1.230037e-02	ci left: 2.146908e-02	ci right 2.173500e-02	k: 99368	n:4600000
KS ci ratio: 3.156448e-03	ci left: 2.507009e-01	ci right 2.514937e-01	k: 1155047	n:4600000
MUTYH   4600000 perm   8772 sec   (524 perm/sec)   p_kst 2.510972e-01   p_cons 2.160174e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 1.228722e-02	ci left: 2.146857e-02	ci right 2.173420e-02	k: 99581	n:4610000
KS ci ratio: 3.152874e-03	ci left: 2.507192e-01	ci right 2.515111e-01	k: 1157640	n:4610000
MUTYH   4610000 perm   8808 sec   (523 perm/sec)   p_kst 2.511150e-01   p_cons 2.160108e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 1.227354e-02	ci left: 2.147001e-02	ci right 2.173536e-02	k: 99803	n:4620000
KS ci ratio: 3.149342e-03	ci left: 2.507336e-01	ci right 2.515247e-01	k: 1160216	n:4620000
MUTYH   4620000 perm   8844 sec   (522 perm/sec)   p_kst 2.511290e-01   p_cons 2.160238e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 1.226140e-02	ci left: 2.146627e-02	ci right 2.173131e-02	k: 100001	n:4630000
KS ci ratio: 3.146043e-03	ci left: 2.507217e-01	ci right 2.515119e-01	k: 1162670	n:4630000
MUTYH   4630000 perm   8881 sec   (521 perm/sec)   p_kst 2.511166e-01   p_cons 2.159849e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 1.224825e-02	ci left: 2.146620e-02	ci right 2.173095e-02	k: 100216	n:4640000
KS ci ratio: 3.142648e-03	ci left: 2.507225e-01	ci right 2.515119e-01	k: 1165183	n:4640000
MUTYH   4640000 perm   8918 sec   (520 perm/sec)   p_kst 2.511170e-01   p_cons 2.159828e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 1.223513e-02	ci left: 2.146613e-02	ci right 2.173060e-02	k: 100431	n:4650000
KS ci ratio: 3.139260e-03	ci left: 2.507237e-01	ci right 2.515123e-01	k: 1167698	n:4650000
MUTYH   4650000 perm   8955 sec   (519 perm/sec)   p_kst 2.511178e-01   p_cons 2.159806e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 1.222367e-02	ci left: 2.146050e-02	ci right 2.172465e-02	k: 100620	n:4660000
KS ci ratio: 3.135860e-03	ci left: 2.507278e-01	ci right 2.515155e-01	k: 1170226	n:4660000
MUTYH   4660000 perm   8991 sec   (518 perm/sec)   p_kst 2.511215e-01   p_cons 2.159227e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 1.220865e-02	ci left: 2.146727e-02	ci right 2.173118e-02	k: 100867	n:4670000
KS ci ratio: 3.132510e-03	ci left: 2.507271e-01	ci right 2.515139e-01	k: 1172732	n:4670000
MUTYH   4670000 perm   9028 sec   (517 perm/sec)   p_kst 2.511203e-01   p_cons 2.159893e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 1.219357e-02	ci left: 2.147445e-02	ci right 2.173811e-02	k: 101116	n:4680000
KS ci ratio: 3.129213e-03	ci left: 2.507213e-01	ci right 2.515073e-01	k: 1175214	n:4680000
MUTYH   4680000 perm   9064 sec   (516 perm/sec)   p_kst 2.511141e-01   p_cons 2.160598e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 1.218149e-02	ci left: 2.147139e-02	ci right 2.173475e-02	k: 101317	n:4690000
KS ci ratio: 3.125769e-03	ci left: 2.507344e-01	ci right 2.515196e-01	k: 1177785	n:4690000
MUTYH   4690000 perm   9102 sec   (515 perm/sec)   p_kst 2.511269e-01   p_cons 2.160277e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 1.216852e-02	ci left: 2.147152e-02	ci right 2.173460e-02	k: 101533	n:4700000
KS ci ratio: 3.122589e-03	ci left: 2.507171e-01	ci right 2.515015e-01	k: 1180213	n:4700000
MUTYH   4700000 perm   9139 sec   (514 perm/sec)   p_kst 2.511091e-01   p_cons 2.160277e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 1.215578e-02	ci left: 2.147102e-02	ci right 2.173382e-02	k: 101746	n:4710000
KS ci ratio: 3.119273e-03	ci left: 2.507175e-01	ci right 2.515010e-01	k: 1182724	n:4710000
MUTYH   4710000 perm   9176 sec   (513 perm/sec)   p_kst 2.511091e-01   p_cons 2.160212e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 1.214187e-02	ci left: 2.147474e-02	ci right 2.173729e-02	k: 101979	n:4720000
KS ci ratio: 3.116071e-03	ci left: 2.507054e-01	ci right 2.514881e-01	k: 1185176	n:4720000
MUTYH   4720000 perm   9213 sec   (512 perm/sec)   p_kst 2.510966e-01   p_cons 2.160572e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 1.213018e-02	ci left: 2.147086e-02	ci right 2.173310e-02	k: 102176	n:4730000
KS ci ratio: 3.112687e-03	ci left: 2.507164e-01	ci right 2.514982e-01	k: 1187737	n:4730000
MUTYH   4730000 perm   9251 sec   (511 perm/sec)   p_kst 2.511072e-01   p_cons 2.160169e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 1.211641e-02	ci left: 2.147436e-02	ci right 2.173635e-02	k: 102408	n:4740000
KS ci ratio: 3.109523e-03	ci left: 2.507023e-01	ci right 2.514833e-01	k: 1190179	n:4740000
MUTYH   4740000 perm   9288 sec   (510 perm/sec)   p_kst 2.510926e-01   p_cons 2.160506e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 1.210305e-02	ci left: 2.147659e-02	ci right 2.173831e-02	k: 102634	n:4750000
KS ci ratio: 3.106298e-03	ci left: 2.506966e-01	ci right 2.514768e-01	k: 1192661	n:4750000
MUTYH   4750000 perm   9326 sec   (509 perm/sec)   p_kst 2.510865e-01   p_cons 2.160716e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 1.209124e-02	ci left: 2.147357e-02	ci right 2.173500e-02	k: 102835	n:4760000
KS ci ratio: 3.103078e-03	ci left: 2.506916e-01	ci right 2.514709e-01	k: 1195146	n:4760000
MUTYH   4760000 perm   9363 sec   (508 perm/sec)   p_kst 2.510811e-01   p_cons 2.160399e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 1.207874e-02	ci left: 2.147307e-02	ci right 2.173422e-02	k: 103048	n:4770000
KS ci ratio: 3.099870e-03	ci left: 2.506864e-01	ci right 2.514649e-01	k: 1197630	n:4770000
MUTYH   4770000 perm   9401 sec   (507 perm/sec)   p_kst 2.510755e-01   p_cons 2.160335e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 1.206723e-02	ci left: 2.146924e-02	ci right 2.173009e-02	k: 103245	n:4780000
KS ci ratio: 3.096481e-03	ci left: 2.507044e-01	ci right 2.514821e-01	k: 1200225	n:4780000
MUTYH   4780000 perm   9439 sec   (506 perm/sec)   p_kst 2.510931e-01   p_cons 2.159937e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 1.205344e-02	ci left: 2.147354e-02	ci right 2.173414e-02	k: 103481	n:4790000
KS ci ratio: 3.093382e-03	ci left: 2.506883e-01	ci right 2.514652e-01	k: 1202657	n:4790000
MUTYH   4790000 perm   9477 sec   (505 perm/sec)   p_kst 2.510766e-01   p_cons 2.160355e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 1.204082e-02	ci left: 2.147387e-02	ci right 2.173420e-02	k: 103698	n:4800000
KS ci ratio: 3.090081e-03	ci left: 2.506982e-01	ci right 2.514742e-01	k: 1205213	n:4800000
MUTYH   4800000 perm   9514 sec   (504 perm/sec)   p_kst 2.510860e-01   p_cons 2.160375e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 1.202759e-02	ci left: 2.147649e-02	ci right 2.173656e-02	k: 103926	n:4810000
KS ci ratio: 3.086753e-03	ci left: 2.507125e-01	ci right 2.514878e-01	k: 1207791	n:4810000
MUTYH   4810000 perm   9552 sec   (504 perm/sec)   p_kst 2.511000e-01   p_cons 2.160624e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 1.201482e-02	ci left: 2.147764e-02	ci right 2.173745e-02	k: 104147	n:4820000
KS ci ratio: 3.083464e-03	ci left: 2.507233e-01	ci right 2.514978e-01	k: 1210352	n:4820000
MUTYH   4820000 perm   9590 sec   (503 perm/sec)   p_kst 2.511104e-01   p_cons 2.160726e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 1.200308e-02	ci left: 2.147529e-02	ci right 2.173481e-02	k: 104351	n:4830000
KS ci ratio: 3.080130e-03	ci left: 2.507408e-01	ci right 2.515145e-01	k: 1212946	n:4830000
MUTYH   4830000 perm   9628 sec   (502 perm/sec)   p_kst 2.511275e-01   p_cons 2.160476e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 1.199126e-02	ci left: 2.147335e-02	ci right 2.173260e-02	k: 104557	n:4840000
KS ci ratio: 3.077090e-03	ci left: 2.507236e-01	ci right 2.514965e-01	k: 1215372	n:4840000
MUTYH   4840000 perm   9666 sec   (501 perm/sec)   p_kst 2.511099e-01   p_cons 2.160269e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 1.197942e-02	ci left: 2.147163e-02	ci right 2.173059e-02	k: 104764	n:4850000
KS ci ratio: 3.073895e-03	ci left: 2.507267e-01	ci right 2.514988e-01	k: 1217896	n:4850000
MUTYH   4850000 perm   9705 sec   (500 perm/sec)   p_kst 2.511126e-01   p_cons 2.160082e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 1.196686e-02	ci left: 2.147258e-02	ci right 2.173128e-02	k: 104984	n:4860000
KS ci ratio: 3.070795e-03	ci left: 2.507192e-01	ci right 2.514905e-01	k: 1220369	n:4860000
MUTYH   4860000 perm   9744 sec   (499 perm/sec)   p_kst 2.511047e-01   p_cons 2.160165e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 1.195660e-02	ci left: 2.146554e-02	ci right 2.172394e-02	k: 105165	n:4870000
KS ci ratio: 3.067605e-03	ci left: 2.507239e-01	ci right 2.514944e-01	k: 1222901	n:4870000
MUTYH   4870000 perm   9783 sec   (498 perm/sec)   p_kst 2.511090e-01   p_cons 2.159446e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 1.194341e-02	ci left: 2.146895e-02	ci right 2.172711e-02	k: 105397	n:4880000
KS ci ratio: 3.064371e-03	ci left: 2.507354e-01	ci right 2.515051e-01	k: 1225466	n:4880000
MUTYH   4880000 perm   9821 sec   (497 perm/sec)   p_kst 2.511201e-01   p_cons 2.159775e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 1.193148e-02	ci left: 2.146807e-02	ci right 2.172595e-02	k: 105608	n:4890000
KS ci ratio: 3.061161e-03	ci left: 2.507449e-01	ci right 2.515139e-01	k: 1228022	n:4890000
MUTYH   4890000 perm   9860 sec   (496 perm/sec)   p_kst 2.511292e-01   p_cons 2.159673e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 1.192068e-02	ci left: 2.146332e-02	ci right 2.172091e-02	k: 105800	n:4900000
KS ci ratio: 3.058061e-03	ci left: 2.507422e-01	ci right 2.515103e-01	k: 1230518	n:4900000
MUTYH   4900000 perm   9899 sec   (495 perm/sec)   p_kst 2.511261e-01   p_cons 2.159184e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 1.190957e-02	ci left: 2.145982e-02	ci right 2.171712e-02	k: 105998	n:4910000
KS ci ratio: 3.055027e-03	ci left: 2.507326e-01	ci right 2.514999e-01	k: 1232980	n:4910000
MUTYH   4910000 perm   9938 sec   (494 perm/sec)   p_kst 2.511161e-01   p_cons 2.158819e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 1.189768e-02	ci left: 2.145916e-02	ci right 2.171620e-02	k: 106210	n:4920000
KS ci ratio: 3.051951e-03	ci left: 2.507293e-01	ci right 2.514958e-01	k: 1235473	n:4920000
MUTYH   4920000 perm   9977 sec   (493 perm/sec)   p_kst 2.511124e-01   p_cons 2.158740e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 1.188503e-02	ci left: 2.146134e-02	ci right 2.171813e-02	k: 106436	n:4930000
KS ci ratio: 3.048852e-03	ci left: 2.507298e-01	ci right 2.514956e-01	k: 1237985	n:4930000
MUTYH   4930000 perm   10016 sec   (492 perm/sec)   p_kst 2.511126e-01   p_cons 2.158945e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 1.187219e-02	ci left: 2.146431e-02	ci right 2.172086e-02	k: 106666	n:4940000
KS ci ratio: 3.045767e-03	ci left: 2.507300e-01	ci right 2.514950e-01	k: 1240495	n:4940000
MUTYH   4940000 perm   10056 sec   (491 perm/sec)   p_kst 2.511123e-01   p_cons 2.159231e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 1.186059e-02	ci left: 2.146305e-02	ci right 2.171933e-02	k: 106875	n:4950000
KS ci ratio: 3.042694e-03	ci left: 2.507297e-01	ci right 2.514940e-01	k: 1243003	n:4950000
MUTYH   4950000 perm   10095 sec   (490 perm/sec)   p_kst 2.511117e-01   p_cons 2.159091e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 1.184777e-02	ci left: 2.146621e-02	ci right 2.172225e-02	k: 107106	n:4960000
KS ci ratio: 3.039676e-03	ci left: 2.507239e-01	ci right 2.514873e-01	k: 1245483	n:4960000
MUTYH   4960000 perm   10135 sec   (489 perm/sec)   p_kst 2.511054e-01   p_cons 2.159395e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 1.183663e-02	ci left: 2.146354e-02	ci right 2.171931e-02	k: 107308	n:4970000
KS ci ratio: 3.036678e-03	ci left: 2.507166e-01	ci right 2.514793e-01	k: 1247956	n:4970000
MUTYH   4970000 perm   10173 sec   (489 perm/sec)   p_kst 2.510978e-01   p_cons 2.159115e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 1.182468e-02	ci left: 2.146389e-02	ci right 2.171940e-02	k: 107525	n:4980000
KS ci ratio: 3.033615e-03	ci left: 2.507186e-01	ci right 2.514805e-01	k: 1250475	n:4980000
MUTYH   4980000 perm   10212 sec   (488 perm/sec)   p_kst 2.510994e-01   p_cons 2.159137e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 1.181271e-02	ci left: 2.146443e-02	ci right 2.171969e-02	k: 107743	n:4990000
KS ci ratio: 3.030457e-03	ci left: 2.507334e-01	ci right 2.514946e-01	k: 1253058	n:4990000
MUTYH   4990000 perm   10252 sec   (487 perm/sec)   p_kst 2.511138e-01   p_cons 2.159178e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 1.180072e-02	ci left: 2.146518e-02	ci right 2.172018e-02	k: 107962	n:5000000
KS ci ratio: 3.027408e-03	ci left: 2.507359e-01	ci right 2.514964e-01	k: 1255580	n:5000000
MUTYH   5000000 perm   10291 sec   (486 perm/sec)   p_kst 2.511160e-01   p_cons 2.159240e-02   p_joint 0

Outputting figure to mutsig2_images.part000000000110/MUTYH.2_1714_5000000_0.25112_0.021592_0.png
                gene_name: MUTYH
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 91 percent done.
MYADM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
Cons ci ratio: 5.045244e-01	ci left: 4.494298e-03	ci right 7.604055e-03	k: 59	n:10000
KS ci ratio: 3.409181e-02	ci left: 5.595257e-01	ci right 5.790339e-01	k: 5693	n:10000
MYADM   10000 perm   1 sec   (6765 perm/sec)   p_kst 5.693000e-01   p_cons 5.900000e-03   p_joint 1.610000e-02

Joint ci ratio: 2.136671e-01	ci left: 1.478008e-02	ci right 1.836246e-02	k: 330	n:20000
Cons ci ratio: 3.727189e-01	ci left: 4.477090e-03	ci right 6.570623e-03	k: 109	n:20000
KS ci ratio: 2.412031e-02	ci left: 5.621523e-01	ci right 5.759277e-01	k: 11381	n:20000
MYADM   20000 perm   3 sec   (6005 perm/sec)   p_kst 5.690500e-01   p_cons 5.450000e-03   p_joint 1.650000e-02

Joint ci ratio: 1.720960e-01	ci left: 1.553552e-02	ci right 1.849242e-02	k: 509	n:30000
Cons ci ratio: 3.181960e-01	ci left: 4.233429e-03	ci right 5.864692e-03	k: 150	n:30000
KS ci ratio: 1.986439e-02	ci left: 5.592005e-01	ci right 5.704537e-01	k: 16945	n:30000
MYADM   30000 perm   5 sec   (5662 perm/sec)   p_kst 5.648333e-01   p_cons 5.000000e-03   p_joint 1.696667e-02

Joint ci ratio: 1.862743e-01	ci left: 9.929432e-03	ci right 1.199249e-02	k: 437	n:40000
Cons ci ratio: 2.793097e-01	ci left: 4.216083e-03	ci right 5.607289e-03	k: 195	n:40000
KS ci ratio: 1.719916e-02	ci left: 5.600745e-01	ci right 5.698160e-01	k: 22598	n:40000
MYADM   40000 perm   7 sec   (5441 perm/sec)   p_kst 5.649500e-01   p_cons 4.875000e-03   p_joint 1.092500e-02

Joint ci ratio: 1.659211e-01	ci left: 1.012342e-02	ci right 1.197401e-02	k: 551	n:50000
Cons ci ratio: 2.493120e-01	ci left: 4.306830e-03	ci right 5.551719e-03	k: 245	n:50000
KS ci ratio: 1.531944e-02	ci left: 5.626431e-01	ci right 5.713491e-01	k: 28350	n:50000
MYADM   50000 perm   9 sec   (5286 perm/sec)   p_kst 5.670000e-01   p_cons 4.900000e-03   p_joint 1.102000e-02

Joint ci ratio: 1.274712e-01	ci left: 1.452672e-02	ci right 1.652054e-02	k: 930	n:60000
Cons ci ratio: 2.300303e-01	ci left: 4.262702e-03	ci right 5.386019e-03	k: 288	n:60000
KS ci ratio: 1.398046e-02	ci left: 5.631740e-01	ci right 5.711195e-01	k: 34029	n:60000
MYADM   60000 perm   12 sec   (5159 perm/sec)   p_kst 5.671500e-01   p_cons 4.800000e-03   p_joint 1.550000e-02

Joint ci ratio: 1.183016e-01	ci left: 1.452853e-02	ci right 1.636910e-02	k: 1080	n:70000
Cons ci ratio: 2.166010e-01	ci left: 4.152744e-03	ci right 5.174697e-03	k: 325	n:70000
KS ci ratio: 1.296170e-02	ci left: 5.627762e-01	ci right 5.701326e-01	k: 39652	n:70000
MYADM   70000 perm   14 sec   (5053 perm/sec)   p_kst 5.664571e-01   p_cons 4.642857e-03   p_joint 1.542857e-02

Joint ci ratio: 1.100936e-01	ci left: 1.474047e-02	ci right 1.646992e-02	k: 1247	n:80000
Cons ci ratio: 2.035946e-01	ci left: 4.142890e-03	ci right 5.093584e-03	k: 368	n:80000
KS ci ratio: 1.214452e-02	ci left: 5.622067e-01	ci right 5.690886e-01	k: 45252	n:80000
MYADM   80000 perm   16 sec   (4949 perm/sec)   p_kst 5.656500e-01   p_cons 4.600000e-03   p_joint 1.558750e-02

Joint ci ratio: 1.035354e-01	ci left: 1.486544e-02	ci right 1.649933e-02	k: 1410	n:90000
Cons ci ratio: 1.885860e-01	ci left: 4.327151e-03	ci right 5.238552e-03	k: 429	n:90000
KS ci ratio: 1.143847e-02	ci left: 5.628989e-01	ci right 5.693857e-01	k: 50953	n:90000
MYADM   90000 perm   19 sec   (4855 perm/sec)   p_kst 5.661444e-01   p_cons 4.766667e-03   p_joint 1.566667e-02

Joint ci ratio: 9.824712e-02	ci left: 1.489956e-02	ci right 1.644872e-02	k: 1566	n:100000
Cons ci ratio: 1.777492e-01	ci left: 4.409710e-03	ci right 5.279393e-03	k: 483	n:100000
KS ci ratio: 1.088012e-02	ci left: 5.617704e-01	ci right 5.679259e-01	k: 56485	n:100000
MYADM   100000 perm   21 sec   (4767 perm/sec)   p_kst 5.648500e-01   p_cons 4.830000e-03   p_joint 1.566000e-02

Joint ci ratio: 9.352902e-02	ci left: 1.498250e-02	ci right 1.646137e-02	k: 1728	n:110000
Cons ci ratio: 1.685886e-01	ci left: 4.478483e-03	ci right 5.311587e-03	k: 537	n:110000
KS ci ratio: 1.037140e-02	ci left: 5.620277e-01	ci right 5.678961e-01	k: 62146	n:110000
MYADM   110000 perm   24 sec   (4675 perm/sec)   p_kst 5.649636e-01   p_cons 4.881818e-03   p_joint 1.570909e-02

Joint ci ratio: 8.996446e-02	ci left: 1.487382e-02	ci right 1.628306e-02	k: 1868	n:120000
Cons ci ratio: 1.629402e-01	ci left: 4.408794e-03	ci right 5.198763e-03	k: 575	n:120000
KS ci ratio: 9.927283e-03	ci left: 5.622811e-01	ci right 5.678991e-01	k: 67811	n:120000
MYADM   120000 perm   26 sec   (4587 perm/sec)   p_kst 5.650917e-01   p_cons 4.791667e-03   p_joint 1.556667e-02

Joint ci ratio: 8.576522e-02	ci left: 1.513663e-02	ci right 1.650048e-02	k: 2055	n:130000
Cons ci ratio: 1.546906e-01	ci left: 4.535044e-03	ci right 5.302680e-03	k: 638	n:130000
KS ci ratio: 9.527226e-03	ci left: 5.629387e-01	ci right 5.683353e-01	k: 73533	n:130000
MYADM   130000 perm   29 sec   (4509 perm/sec)   p_kst 5.656385e-01   p_cons 4.907692e-03   p_joint 1.580769e-02

Joint ci ratio: 8.244053e-02	ci left: 1.523723e-02	ci right 1.655436e-02	k: 2224	n:140000
Cons ci ratio: 1.478969e-01	ci left: 4.623480e-03	ci right 5.368677e-03	k: 698	n:140000
KS ci ratio: 9.178988e-03	ci left: 5.631273e-01	ci right 5.683271e-01	k: 79202	n:140000
MYADM   140000 perm   32 sec   (4430 perm/sec)   p_kst 5.657286e-01   p_cons 4.985714e-03   p_joint 1.588571e-02

Joint ci ratio: 7.947471e-02	ci left: 1.532530e-02	ci right 1.660018e-02	k: 2393	n:150000
Cons ci ratio: 1.417385e-01	ci left: 4.713625e-03	ci right 5.439042e-03	k: 760	n:150000
KS ci ratio: 8.871033e-03	ci left: 5.630336e-01	ci right 5.680572e-01	k: 84832	n:150000
MYADM   150000 perm   34 sec   (4355 perm/sec)   p_kst 5.655467e-01   p_cons 5.066667e-03   p_joint 1.595333e-02

Joint ci ratio: 7.679232e-02	ci left: 1.540924e-02	ci right 1.664589e-02	k: 2563	n:160000
Cons ci ratio: 1.371302e-01	ci left: 4.732690e-03	ci right 5.435428e-03	k: 812	n:160000
KS ci ratio: 8.590817e-03	ci left: 5.630293e-01	ci right 5.678933e-01	k: 90474	n:160000
MYADM   160000 perm   37 sec   (4288 perm/sec)   p_kst 5.654625e-01   p_cons 5.075000e-03   p_joint 1.601875e-02

Joint ci ratio: 7.453079e-02	ci left: 1.541464e-02	ci right 1.661371e-02	k: 2721	n:170000
Cons ci ratio: 1.338019e-01	ci left: 4.687292e-03	ci right 5.365051e-03	k: 853	n:170000
KS ci ratio: 8.335280e-03	ci left: 5.630455e-01	ci right 5.677641e-01	k: 96119	n:170000
MYADM   170000 perm   40 sec   (4219 perm/sec)   p_kst 5.654059e-01   p_cons 5.017647e-03   p_joint 1.600588e-02

Joint ci ratio: 7.229234e-02	ci left: 1.549085e-02	ci right 1.665814e-02	k: 2892	n:180000
Cons ci ratio: 1.295460e-01	ci left: 4.733131e-03	ci right 5.394075e-03	k: 910	n:180000
KS ci ratio: 8.098431e-03	ci left: 5.632340e-01	ci right 5.678194e-01	k: 101795	n:180000
MYADM   180000 perm   43 sec   (4150 perm/sec)   p_kst 5.655278e-01   p_cons 5.055556e-03   p_joint 1.606667e-02

Joint ci ratio: 7.037267e-02	ci left: 1.550263e-02	ci right 1.663852e-02	k: 3052	n:190000
Cons ci ratio: 1.263294e-01	ci left: 4.723469e-03	ci right 5.365460e-03	k: 957	n:190000
KS ci ratio: 7.885331e-03	ci left: 5.631148e-01	ci right 5.675779e-01	k: 107416	n:190000
MYADM   190000 perm   47 sec   (4085 perm/sec)   p_kst 5.653474e-01   p_cons 5.036842e-03   p_joint 1.606316e-02

Joint ci ratio: 6.867429e-02	ci left: 1.547919e-02	ci right 1.658490e-02	k: 3205	n:200000
Cons ci ratio: 1.235886e-01	ci left: 4.695571e-03	ci right 5.318909e-03	k: 1000	n:200000
KS ci ratio: 7.690089e-03	ci left: 5.628889e-01	ci right 5.672392e-01	k: 113013	n:200000
MYADM   200000 perm   50 sec   (4023 perm/sec)   p_kst 5.650650e-01   p_cons 5.000000e-03   p_joint 1.602500e-02

Joint ci ratio: 6.709322e-02	ci left: 1.545828e-02	ci right 1.653609e-02	k: 3358	n:210000
Cons ci ratio: 1.210187e-01	ci left: 4.670466e-03	ci right 5.276656e-03	k: 1043	n:210000
KS ci ratio: 7.506044e-03	ci left: 5.628573e-01	ci right 5.671028e-01	k: 118646	n:210000
MYADM   210000 perm   53 sec   (3964 perm/sec)   p_kst 5.649810e-01   p_cons 4.966667e-03   p_joint 1.599048e-02

Joint ci ratio: 6.557862e-02	ci left: 1.545743e-02	ci right 1.650992e-02	k: 3515	n:220000
Cons ci ratio: 1.183840e-01	ci left: 4.665411e-03	ci right 5.256839e-03	k: 1090	n:220000
KS ci ratio: 7.331762e-03	ci left: 5.630208e-01	ci right 5.671684e-01	k: 124321	n:220000
MYADM   220000 perm   56 sec   (3906 perm/sec)   p_kst 5.650955e-01   p_cons 4.954545e-03   p_joint 1.597727e-02

Joint ci ratio: 6.417103e-02	ci left: 1.545263e-02	ci right 1.648136e-02	k: 3671	n:230000
Cons ci ratio: 1.159143e-01	ci left: 4.660926e-03	ci right 5.238615e-03	k: 1137	n:230000
KS ci ratio: 7.170794e-03	ci left: 5.630536e-01	ci right 5.671100e-01	k: 129969	n:230000
MYADM   230000 perm   60 sec   (3850 perm/sec)   p_kst 5.650826e-01   p_cons 4.943478e-03   p_joint 1.596087e-02

Joint ci ratio: 6.270073e-02	ci left: 1.552228e-02	ci right 1.653112e-02	k: 3845	n:240000
Cons ci ratio: 1.136411e-01	ci left: 4.652884e-03	ci right 5.217508e-03	k: 1183	n:240000
KS ci ratio: 7.018733e-03	ci left: 5.631722e-01	ci right 5.671429e-01	k: 135638	n:240000
MYADM   240000 perm   63 sec   (3785 perm/sec)   p_kst 5.651583e-01   p_cons 4.929167e-03   p_joint 1.602083e-02

Joint ci ratio: 6.139694e-02	ci left: 1.555116e-02	ci right 1.654011e-02	k: 4010	n:250000
Cons ci ratio: 1.114056e-01	ci left: 4.653364e-03	ci right 5.206209e-03	k: 1231	n:250000
KS ci ratio: 6.874162e-03	ci left: 5.634101e-01	ci right 5.673004e-01	k: 141339	n:250000
MYADM   250000 perm   67 sec   (3734 perm/sec)   p_kst 5.653560e-01   p_cons 4.924000e-03   p_joint 1.604000e-02

Joint ci ratio: 6.025930e-02	ci left: 1.553254e-02	ci right 1.650137e-02	k: 4163	n:260000
Cons ci ratio: 1.092114e-01	ci left: 4.661392e-03	ci right 5.203581e-03	k: 1281	n:260000
KS ci ratio: 6.736957e-03	ci left: 5.637190e-01	ci right 5.675334e-01	k: 147063	n:260000
MYADM   260000 perm   71 sec   (3681 perm/sec)   p_kst 5.656269e-01   p_cons 4.926923e-03   p_joint 1.601154e-02

Joint ci ratio: 5.917567e-02	ci left: 1.551911e-02	ci right 1.646910e-02	k: 4317	n:270000
Cons ci ratio: 1.072228e-01	ci left: 4.661713e-03	ci right 5.193443e-03	k: 1329	n:270000
KS ci ratio: 6.609740e-03	ci left: 5.638501e-01	ci right 5.675930e-01	k: 152745	n:270000
MYADM   270000 perm   74 sec   (3625 perm/sec)   p_kst 5.657222e-01   p_cons 4.922222e-03   p_joint 1.598889e-02

Joint ci ratio: 5.806276e-02	ci left: 1.555255e-02	ci right 1.648608e-02	k: 4484	n:280000
Cons ci ratio: 1.053390e-01	ci left: 4.662095e-03	ci right 5.183947e-03	k: 1377	n:280000
KS ci ratio: 6.490836e-03	ci left: 5.638688e-01	ci right 5.675442e-01	k: 158398	n:280000
MYADM   280000 perm   78 sec   (3579 perm/sec)   p_kst 5.657071e-01   p_cons 4.917857e-03   p_joint 1.601429e-02

Joint ci ratio: 5.701038e-02	ci left: 1.558384e-02	ci right 1.650173e-02	k: 4651	n:290000
Cons ci ratio: 1.035512e-01	ci left: 4.662527e-03	ci right 5.175030e-03	k: 1425	n:290000
KS ci ratio: 6.377948e-03	ci left: 5.639005e-01	ci right 5.675120e-01	k: 164055	n:290000
MYADM   290000 perm   82 sec   (3532 perm/sec)   p_kst 5.657069e-01   p_cons 4.913793e-03   p_joint 1.603793e-02

Joint ci ratio: 5.604868e-02	ci left: 1.559346e-02	ci right 1.649592e-02	k: 4812	n:300000
Cons ci ratio: 1.017474e-01	ci left: 4.672746e-03	ci right 5.176891e-03	k: 1476	n:300000
KS ci ratio: 6.270879e-03	ci left: 5.639207e-01	ci right 5.674714e-01	k: 169709	n:300000
MYADM   300000 perm   86 sec   (3482 perm/sec)   p_kst 5.656967e-01   p_cons 4.920000e-03   p_joint 1.604000e-02

Joint ci ratio: 5.513407e-02	ci left: 1.560258e-02	ci right 1.649037e-02	k: 4973	n:310000
Cons ci ratio: 1.001666e-01	ci left: 4.669797e-03	ci right 5.165335e-03	k: 1523	n:310000
KS ci ratio: 6.169554e-03	ci left: 5.638981e-01	ci right 5.673910e-01	k: 175350	n:310000
MYADM   310000 perm   90 sec   (3441 perm/sec)   p_kst 5.656452e-01   p_cons 4.912903e-03   p_joint 1.604194e-02

Joint ci ratio: 5.431660e-02	ci left: 1.558042e-02	ci right 1.645338e-02	k: 5124	n:320000
Cons ci ratio: 9.897422e-02	ci left: 4.636607e-03	ci right 5.122426e-03	k: 1560	n:320000
KS ci ratio: 6.073914e-03	ci left: 5.638023e-01	ci right 5.672403e-01	k: 180967	n:320000
MYADM   320000 perm   94 sec   (3398 perm/sec)   p_kst 5.655219e-01   p_cons 4.875000e-03   p_joint 1.601250e-02

Outputting figure to mutsig2_images.part000000000110/MYADM.2_973_320000_0.56552_0.004875_0.016012.png
                gene_name: MYADM
               theta_stop: 0.099 
                    nperm: 320000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.0049 
      ci_cons_bounds_left: 0.0046 
     ci_cons_bounds_right: 0.0051 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.016 

Current progress: 92 percent done.
MYCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.739975e-01	ci left: 4.408409e-02	ci right 5.258151e-02	k: 482	n:10000
Cons ci ratio: 2.089368e-01	ci left: 3.043932e-02	ci right 3.763545e-02	k: 339	n:10000
KS ci ratio: 7.894111e-02	ci left: 1.899330e-01	ci right 2.056434e-01	k: 1977	n:10000
MYCL1   10000 perm   2 sec   (6147 perm/sec)   p_kst 1.977000e-01   p_cons 3.390000e-02   p_joint 4.820000e-02

Joint ci ratio: 9.231348e-02	ci left: 7.886975e-02	ci right 8.655209e-02	k: 1653	n:20000
Cons ci ratio: 1.433295e-01	ci left: 3.346084e-02	ci right 3.867516e-02	k: 720	n:20000
KS ci ratio: 5.603246e-02	ci left: 1.910620e-01	ci right 2.021264e-01	k: 3931	n:20000
MYCL1   20000 perm   4 sec   (5590 perm/sec)   p_kst 1.965500e-01   p_cons 3.600000e-02   p_joint 8.265000e-02

Joint ci ratio: 7.055222e-02	ci left: 8.999878e-02	ci right 9.661356e-02	k: 2798	n:30000
Cons ci ratio: 1.151371e-01	ci left: 3.505430e-02	ci right 3.936925e-02	k: 1115	n:30000
KS ci ratio: 4.592503e-02	ci left: 1.908931e-01	ci right 1.998993e-01	k: 5861	n:30000
MYCL1   30000 perm   6 sec   (5373 perm/sec)   p_kst 1.953667e-01   p_cons 3.716667e-02   p_joint 9.326667e-02

Joint ci ratio: 7.509591e-02	ci left: 6.137507e-02	ci right 6.618850e-02	k: 2550	n:40000
Cons ci ratio: 1.005217e-01	ci left: 3.478102e-02	ci right 3.848664e-02	k: 1464	n:40000
KS ci ratio: 3.985473e-02	ci left: 1.908541e-01	ci right 1.986402e-01	k: 7789	n:40000
MYCL1   40000 perm   8 sec   (5212 perm/sec)   p_kst 1.947250e-01   p_cons 3.660000e-02   p_joint 6.375000e-02

Joint ci ratio: 5.509379e-02	ci left: 8.940135e-02	ci right 9.448614e-02	k: 4596	n:50000
Cons ci ratio: 9.040395e-02	ci left: 3.459930e-02	ci right 3.789482e-02	k: 1811	n:50000
KS ci ratio: 3.562789e-02	ci left: 1.914357e-01	ci right 1.983998e-01	k: 9745	n:50000
MYCL1   50000 perm   10 sec   (5077 perm/sec)   p_kst 1.949000e-01   p_cons 3.622000e-02   p_joint 9.192000e-02

Outputting figure to mutsig2_images.part000000000110/MYCL1.2_1322_50000_0.1949_0.03622_0.09192.png
                gene_name: MYCL1
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.094 

Current progress: 94 percent done.
MYD88
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.526458e-02	ci left: 6.974658e-01	ci right 7.154138e-01	k: 7065	n:10000
KS ci ratio: 4.715155e-02	ci left: 3.989431e-01	ci right 4.183102e-01	k: 4086	n:10000
MYD88   10000 perm   1 sec   (6788 perm/sec)   p_kst 4.086000e-01   p_cons 7.065000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYD88.2_974_10000_0.4086_0.7065_1.png
                gene_name: MYD88
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
MYF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.394607e-02	ci left: 5.616310e-01	ci right 5.811274e-01	k: 5714	n:10000
KS ci ratio: 7.672327e-02	ci left: 1.989967e-01	ci right 2.149743e-01	k: 2069	n:10000
MYF6   10000 perm   1 sec   (6925 perm/sec)   p_kst 2.069000e-01   p_cons 5.714000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYF6.2_741_10000_0.2069_0.5714_1.png
                gene_name: MYF6
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
MYL10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.730686e-02	ci left: 8.295109e-01	ci right 8.440923e-01	k: 8369	n:10000
Cons ci ratio: 3.084238e-02	ci left: 6.079920e-01	ci right 6.271395e-01	k: 6176	n:10000
KS ci ratio: 3.109754e-02	ci left: 6.040749e-01	ci right 6.232588e-01	k: 6137	n:10000
MYL10   10000 perm   1 sec   (6807 perm/sec)   p_kst 6.137000e-01   p_cons 6.176000e-01   p_joint 8.369000e-01

Outputting figure to mutsig2_images.part000000000110/MYL10.2_713_10000_0.6137_0.6176_0.8369.png
                gene_name: MYL10
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 98 percent done.
MYL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.800553e-02	ci left: 8.182217e-01	ci right 8.331881e-01	k: 8258	n:10000
KS ci ratio: 1.608669e-02	ci left: 8.488632e-01	ci right 8.627288e-01	k: 8559	n:10000
MYL9   10000 perm   1 sec   (6853 perm/sec)   p_kst 8.559000e-01   p_cons 8.258000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000110/MYL9.2_531_10000_0.8559_0.8258_1.png
                gene_name: MYL9
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000110
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 110 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1430>
Subject: Job 9894024: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1430>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000111> was used as the working directory.
Started at Sat Oct  6 00:20:36 2012
Results reported at Sat Oct  6 02:12:19 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000111.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000111.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 111  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000111.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   7241.94 sec.
    Max Memory :      3581 MB
    Max Swap   :      5953 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
111
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 111
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 111: processing genes 9918 - 10007
Calculating significance of each gene.
Using projection method.
9918	MYNN	8.348672e-01
9919	MYO10	9.000286e-01
9920	MYO15A	9.960023e-01
9921	MYO16	9.416811e-04
9922	MYO18A	9.956364e-01
9923	MYO18B	6.677657e-01
9924	MYO19	9.604296e-01
9925	MYO1A	1.401582e-01
9926	MYO1B	8.480341e-04
9927	MYO1C	9.929972e-01
9928	MYO1D	5.751147e-01
9929	MYO1E	6.093310e-01
9930	MYO1F	9.729006e-01
9931	MYO1G	9.845556e-01
9932	MYO1H	7.402628e-01
9933	MYO3A	4.339856e-02
9934	MYO3B	9.628745e-01
9935	MYO5A	3.257401e-01
9936	MYO5B	9.999903e-01
9937	MYO5C	6.341114e-01
9938	MYO6	5.909384e-01
9939	MYO7A	9.584782e-01
9940	MYO7B	9.997250e-01
9941	MYO9A	4.072463e-01
9942	MYO9B	9.973195e-01
9943	MYOC	6.313014e-01
9944	MYOCD	2.412813e-01
9945	MYOD1	1
9946	MYOF	9.101613e-01
9947	MYOG	7.975060e-01
9948	MYOM1	9.636709e-01
9949	MYOM2	4.353232e-01
In gene MYOM3 the following bins exceed PROBCAP:
    READ-AG-3890	categ 6	N = 4439    n = 1	mu =   1.64e-07
9950	MYOM3	9.903209e-01
9951	MYOT	1.068106e-02
9952	MYOZ1	3.594306e-02
9953	MYOZ2	1.738558e-02
9954	MYOZ3	4.381388e-01
9955	MYPN	1.095624e-01
9956	MYPOP	3.955661e-01
9957	MYRIP	2.418414e-01
9958	MYSM1	9.716981e-01
9959	MYST1	1.404165e-01
9960	MYST2	5.397564e-01
9961	MYST3	4.408266e-01
9962	MYST4	3.382576e-01
9963	MYT1	3.899970e-02
9964	MYT1L	3.029610e-01
9965	MZF1	9.594106e-01
9966	N4BP1	3.724564e-01
9967	N4BP2	7.072147e-01
9968	N4BP2L1	1.511048e-01
9969	N4BP2L2	9.240305e-01
9970	N4BP3	9.811116e-01
9971	N6AMT1	4.959292e-01
9972	N6AMT2	3.415205e-01
9973	NAA10	1
9974	NAA11	7.205438e-02
9975	NAA15	1.400496e-01
9976	NAA16	4.391991e-01
9977	NAA20	1
9978	NAA25	1.357938e-01
9979	NAA30	6.912159e-01
9980	NAA35	8.836240e-01
9981	NAA38	3.563615e-01
9982	NAA40	1
9983	NAA50	1.943015e-01
9984	NAAA	7.626579e-01
9985	NAALAD2	3.087480e-04
9986	NAALADL1	8.278986e-01
9987	NAALADL2	3.631752e-01
9988	NAB1	4.631517e-01
9989	NAB2	5.616760e-02
9990	NACA	9.239962e-01
9991	NACA2	5.948120e-01
9992	NACC1	7.240024e-01
9993	NACC2	1
9994	NADK	7.498873e-01
9995	NADSYN1	8.582013e-01
9996	NAE1	1.031826e-01
9997	NAF1	8.959101e-01
9998	NAGA	8.538988e-01
9999	NAGK	2.660491e-01
10000/18030 10000	NAGLU	3.616707e-01
10001	NAGPA	3.785336e-01
10002	NAGS	9.048981e-01
10003	NAIF1	6.639748e-01
In gene NALCN the following bins exceed PROBCAP:
    COAD-AA-A01Z	categ 6	N = 5389    n = 1	mu =   3.62e-07
10004	NALCN	1.591751e-04
10005	NAMPT	8.000655e-01
10006	NANOG	4.487296e-01
10007	NANOS2	8.051400e-02
Done

Running MutSig 2:
Scatter job 111: processing genes 9918 - 10007
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NALCN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.223374e-01	ci left: 4.145961e-03	ci right 7.153063e-03	k: 55	n:10000
Cons ci ratio: 2.494362e-01	ci left: 2.108956e-02	ci right 2.719198e-02	k: 240	n:10000
KS ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
NALCN   10000 perm   3 sec   (2951 perm/sec)   p_kst 9.400000e-03   p_cons 2.400000e-02   p_joint 5.500000e-03

Joint ci ratio: 4.487885e-01	ci left: 2.950721e-03	ci right 4.698422e-03	k: 75	n:20000
Cons ci ratio: 1.771369e-01	ci left: 2.177980e-02	ci right 2.606015e-02	k: 477	n:20000
KS ci ratio: 2.924988e-01	ci left: 7.598793e-03	ci right 1.024694e-02	k: 177	n:20000
NALCN   20000 perm   11 sec   (1748 perm/sec)   p_kst 8.850000e-03   p_cons 2.385000e-02   p_joint 3.750000e-03

Joint ci ratio: 4.646599e-01	ci left: 1.819386e-03	ci right 2.947120e-03	k: 70	n:30000
Cons ci ratio: 1.449437e-01	ci left: 2.207259e-02	ci right 2.555380e-02	k: 713	n:30000
KS ci ratio: 2.348645e-01	ci left: 8.119307e-03	ci right 1.031065e-02	k: 275	n:30000
NALCN   30000 perm   15 sec   (1965 perm/sec)   p_kst 9.166667e-03   p_cons 2.376667e-02   p_joint 2.333333e-03

Joint ci ratio: 2.852192e-01	ci left: 4.030184e-03	ci right 5.393254e-03	k: 187	n:40000
Cons ci ratio: 1.257285e-01	ci left: 2.223148e-02	ci right 2.523821e-02	k: 948	n:40000
KS ci ratio: 2.014743e-01	ci left: 8.430095e-03	ci right 1.034215e-02	k: 374	n:40000
NALCN   40000 perm   19 sec   (2090 perm/sec)   p_kst 9.350000e-03   p_cons 2.370000e-02   p_joint 4.675000e-03

Joint ci ratio: 3.433561e-01	ci left: 2.154454e-03	ci right 3.064827e-03	k: 129	n:50000
Cons ci ratio: 9.897129e-02	ci left: 2.891245e-02	ci right 3.194239e-02	k: 1520	n:50000
KS ci ratio: 1.862664e-01	ci left: 7.961841e-03	ci right 9.615947e-03	k: 438	n:50000
NALCN   50000 perm   23 sec   (2175 perm/sec)   p_kst 8.760000e-03   p_cons 3.040000e-02   p_joint 2.580000e-03

Joint ci ratio: 3.240239e-01	ci left: 2.039699e-03	ci right 2.842973e-03	k: 145	n:60000
Cons ci ratio: 9.040436e-02	ci left: 2.900807e-02	ci right 3.177093e-02	k: 1822	n:60000
KS ci ratio: 1.698424e-01	ci left: 8.052238e-03	ci right 9.562516e-03	k: 527	n:60000
NALCN   60000 perm   27 sec   (2222 perm/sec)   p_kst 8.783333e-03   p_cons 3.036667e-02   p_joint 2.416667e-03

Joint ci ratio: 2.951073e-01	ci left: 2.143680e-03	ci right 2.898502e-03	k: 175	n:70000
Cons ci ratio: 8.688518e-02	ci left: 2.702805e-02	ci right 2.949697e-02	k: 1977	n:70000
KS ci ratio: 1.577613e-01	ci left: 8.052777e-03	ci right 9.445546e-03	k: 611	n:70000
NALCN   70000 perm   31 sec   (2265 perm/sec)   p_kst 8.728571e-03   p_cons 2.824286e-02   p_joint 2.500000e-03

Joint ci ratio: 2.886519e-01	ci left: 1.968372e-03	ci right 2.643533e-03	k: 183	n:80000
Cons ci ratio: 8.141412e-02	ci left: 2.701473e-02	ci right 2.931965e-02	k: 2252	n:80000
KS ci ratio: 1.474054e-01	ci left: 8.116259e-03	ci right 9.419740e-03	k: 700	n:80000
NALCN   80000 perm   35 sec   (2288 perm/sec)   p_kst 8.750000e-03   p_cons 2.815000e-02   p_joint 2.287500e-03

Joint ci ratio: 2.347413e-01	ci left: 2.726431e-03	ci right 3.461731e-03	k: 277	n:90000
Cons ci ratio: 7.698687e-02	ci left: 2.692097e-02	ci right 2.908737e-02	k: 2519	n:90000
KS ci ratio: 1.418736e-01	ci left: 7.814073e-03	ci right 9.017934e-03	k: 756	n:90000
NALCN   90000 perm   39 sec   (2297 perm/sec)   p_kst 8.400000e-03   p_cons 2.798889e-02   p_joint 3.077778e-03

Joint ci ratio: 2.267398e-01	ci left: 2.642216e-03	ci right 3.327116e-03	k: 297	n:100000
Cons ci ratio: 7.288903e-02	ci left: 2.708444e-02	ci right 2.914305e-02	k: 2810	n:100000
KS ci ratio: 1.354987e-01	ci left: 7.737322e-03	ci right 8.871475e-03	k: 829	n:100000
NALCN   100000 perm   43 sec   (2308 perm/sec)   p_kst 8.290000e-03   p_cons 2.810000e-02   p_joint 2.970000e-03

Joint ci ratio: 2.331321e-01	ci left: 2.264884e-03	ci right 2.870909e-03	k: 281	n:110000
Cons ci ratio: 6.924509e-02	ci left: 2.732794e-02	ci right 2.929703e-02	k: 3113	n:110000
KS ci ratio: 1.300576e-01	ci left: 7.657927e-03	ci right 8.731882e-03	k: 900	n:110000
NALCN   110000 perm   48 sec   (2313 perm/sec)   p_kst 8.181818e-03   p_cons 2.830000e-02   p_joint 2.554545e-03

Joint ci ratio: 2.323328e-01	ci left: 2.091816e-03	ci right 2.649336e-03	k: 283	n:120000
Cons ci ratio: 6.613794e-02	ci left: 2.750019e-02	ci right 2.938936e-02	k: 3412	n:120000
KS ci ratio: 1.243238e-01	ci left: 7.705580e-03	ci right 8.735066e-03	k: 985	n:120000
NALCN   120000 perm   52 sec   (2313 perm/sec)   p_kst 8.208333e-03   p_cons 2.843333e-02   p_joint 2.358333e-03

Joint ci ratio: 2.275850e-01	ci left: 2.017888e-03	ci right 2.543170e-03	k: 295	n:130000
Cons ci ratio: 6.359126e-02	ci left: 2.749613e-02	ci right 2.930960e-02	k: 3691	n:130000
KS ci ratio: 1.192871e-01	ci left: 7.746781e-03	ci right 8.736881e-03	k: 1070	n:130000
NALCN   130000 perm   56 sec   (2301 perm/sec)   p_kst 8.230769e-03   p_cons 2.839231e-02   p_joint 2.269231e-03

Joint ci ratio: 2.206176e-01	ci left: 2.001849e-03	ci right 2.504837e-03	k: 314	n:140000
Cons ci ratio: 6.119102e-02	ci left: 2.760644e-02	ci right 2.935602e-02	k: 3986	n:140000
KS ci ratio: 1.151688e-01	ci left: 7.734244e-03	ci right 8.686294e-03	k: 1148	n:140000
NALCN   140000 perm   61 sec   (2295 perm/sec)   p_kst 8.200000e-03   p_cons 2.847143e-02   p_joint 2.242857e-03

Joint ci ratio: 2.272354e-01	ci left: 1.755095e-03	ci right 2.211166e-03	k: 296	n:150000
Cons ci ratio: 5.888095e-02	ci left: 2.785429e-02	ci right 2.955066e-02	k: 4304	n:150000
KS ci ratio: 1.120032e-01	ci left: 7.646107e-03	ci right 8.559727e-03	k: 1214	n:150000
NALCN   150000 perm   66 sec   (2286 perm/sec)   p_kst 8.093333e-03   p_cons 2.869333e-02   p_joint 1.973333e-03

Joint ci ratio: 2.276338e-01	ci left: 1.639497e-03	ci right 2.066379e-03	k: 295	n:160000
Cons ci ratio: 5.706244e-02	ci left: 2.783185e-02	ci right 2.947279e-02	k: 4583	n:160000
KS ci ratio: 1.087431e-01	ci left: 7.617952e-03	ci right 8.500014e-03	k: 1288	n:160000
NALCN   160000 perm   70 sec   (2273 perm/sec)   p_kst 8.050000e-03   p_cons 2.864375e-02   p_joint 1.843750e-03

Joint ci ratio: 2.220787e-01	ci left: 1.626320e-03	ci right 2.038025e-03	k: 310	n:170000
Cons ci ratio: 5.529738e-02	ci left: 2.791723e-02	ci right 2.951066e-02	k: 4880	n:170000
KS ci ratio: 1.055960e-01	ci left: 7.616362e-03	ci right 8.471131e-03	k: 1366	n:170000
NALCN   170000 perm   75 sec   (2261 perm/sec)   p_kst 8.035294e-03   p_cons 2.870588e-02   p_joint 1.823529e-03

Joint ci ratio: 1.675054e-01	ci left: 2.779219e-03	ci right 3.292549e-03	k: 545	n:180000
Cons ci ratio: 5.368658e-02	ci left: 2.799382e-02	ci right 2.954363e-02	k: 5177	n:180000
KS ci ratio: 1.018579e-01	ci left: 7.745224e-03	ci right 8.581844e-03	k: 1468	n:180000
NALCN   180000 perm   80 sec   (2249 perm/sec)   p_kst 8.155556e-03   p_cons 2.876111e-02   p_joint 3.027778e-03

Joint ci ratio: 1.678274e-01	ci left: 2.622842e-03	ci right 3.108312e-03	k: 543	n:190000
Cons ci ratio: 5.235174e-02	ci left: 2.791226e-02	ci right 2.941796e-02	k: 5445	n:190000
KS ci ratio: 9.900001e-02	ci left: 7.778851e-03	ci right 8.594157e-03	k: 1554	n:190000
NALCN   190000 perm   85 sec   (2235 perm/sec)   p_kst 8.178947e-03   p_cons 2.865789e-02   p_joint 2.857895e-03

Joint ci ratio: 1.649752e-01	ci left: 2.582739e-03	ci right 3.051855e-03	k: 562	n:200000
Cons ci ratio: 5.113939e-02	ci left: 2.780965e-02	ci right 2.927405e-02	k: 5707	n:200000
KS ci ratio: 9.681711e-02	ci left: 7.736207e-03	ci right 8.528149e-03	k: 1625	n:200000
NALCN   200000 perm   90 sec   (2219 perm/sec)   p_kst 8.125000e-03   p_cons 2.853500e-02   p_joint 2.810000e-03

Joint ci ratio: 1.610198e-01	ci left: 2.587647e-03	ci right 3.045296e-03	k: 590	n:210000
Cons ci ratio: 4.991723e-02	ci left: 2.781598e-02	ci right 2.924470e-02	k: 5990	n:210000
KS ci ratio: 9.449220e-02	ci left: 7.744304e-03	ci right 8.516984e-03	k: 1706	n:210000
NALCN   210000 perm   95 sec   (2200 perm/sec)   p_kst 8.123810e-03   p_cons 2.852381e-02   p_joint 2.809524e-03

Joint ci ratio: 1.598146e-01	ci left: 2.509285e-03	ci right 2.949434e-03	k: 599	n:220000
Cons ci ratio: 4.879471e-02	ci left: 2.780414e-02	ci right 2.919923e-02	k: 6269	n:220000
KS ci ratio: 9.287861e-02	ci left: 7.658612e-03	ci right 8.408983e-03	k: 1766	n:220000
NALCN   220000 perm   101 sec   (2182 perm/sec)   p_kst 8.027273e-03   p_cons 2.849545e-02   p_joint 2.722727e-03

Joint ci ratio: 1.553452e-01	ci left: 2.546364e-03	ci right 2.979362e-03	k: 634	n:230000
Cons ci ratio: 4.771843e-02	ci left: 2.782374e-02	ci right 2.918817e-02	k: 6555	n:230000
KS ci ratio: 9.114392e-02	ci left: 7.614469e-03	ci right 8.345838e-03	k: 1834	n:230000
NALCN   230000 perm   106 sec   (2166 perm/sec)   p_kst 7.973913e-03   p_cons 2.850000e-02   p_joint 2.756522e-03

Joint ci ratio: 1.628537e-01	ci left: 2.212184e-03	ci right 2.608319e-03	k: 577	n:240000
Cons ci ratio: 4.665074e-02	ci left: 2.791205e-02	ci right 2.924936e-02	k: 6858	n:240000
KS ci ratio: 9.306927e-02	ci left: 6.995864e-03	ci right 7.682781e-03	k: 1760	n:240000
NALCN   240000 perm   112 sec   (2151 perm/sec)   p_kst 7.333333e-03   p_cons 2.857500e-02   p_joint 2.404167e-03

Joint ci ratio: 1.758382e-01	ci left: 1.809544e-03	ci right 2.162162e-03	k: 495	n:250000
Cons ci ratio: 4.568120e-02	ci left: 2.795801e-02	ci right 2.926895e-02	k: 7152	n:250000
KS ci ratio: 9.104837e-02	ci left: 7.024759e-03	ci right 7.698738e-03	k: 1839	n:250000
NALCN   250000 perm   117 sec   (2137 perm/sec)   p_kst 7.356000e-03   p_cons 2.860800e-02   p_joint 1.980000e-03

Joint ci ratio: 1.816227e-01	ci left: 1.626034e-03	ci right 1.954462e-03	k: 464	n:260000
Cons ci ratio: 4.480068e-02	ci left: 2.796265e-02	ci right 2.924788e-02	k: 7436	n:260000
KS ci ratio: 8.955413e-02	ci left: 6.987646e-03	ci right 7.646485e-03	k: 1901	n:260000
NALCN   260000 perm   122 sec   (2123 perm/sec)   p_kst 7.311538e-03   p_cons 2.860000e-02   p_joint 1.784615e-03

Joint ci ratio: 1.816287e-01	ci left: 1.565806e-03	ci right 1.882081e-03	k: 464	n:270000
Cons ci ratio: 4.391067e-02	ci left: 2.804046e-02	ci right 2.930302e-02	k: 7740	n:270000
KS ci ratio: 8.761579e-02	ci left: 7.036693e-03	ci right 7.685061e-03	k: 1986	n:270000
NALCN   270000 perm   128 sec   (2108 perm/sec)   p_kst 7.355556e-03   p_cons 2.866667e-02   p_joint 1.718519e-03

Joint ci ratio: 1.633071e-01	ci left: 1.885855e-03	ci right 2.224585e-03	k: 574	n:280000
Cons ci ratio: 4.297553e-02	ci left: 2.823664e-02	ci right 2.948028e-02	k: 8079	n:280000
KS ci ratio: 8.581894e-02	ci left: 7.078883e-03	ci right 7.717091e-03	k: 2070	n:280000
NALCN   280000 perm   134 sec   (2092 perm/sec)   p_kst 7.392857e-03   p_cons 2.885357e-02   p_joint 2.050000e-03

Joint ci ratio: 1.608102e-01	ci left: 1.880376e-03	ci right 2.212459e-03	k: 592	n:290000
Cons ci ratio: 4.223995e-02	ci left: 2.823183e-02	ci right 2.945347e-02	k: 8363	n:290000
KS ci ratio: 8.432563e-02	ci left: 7.084528e-03	ci right 7.711584e-03	k: 2144	n:290000
NALCN   290000 perm   140 sec   (2076 perm/sec)   p_kst 7.393103e-03   p_cons 2.883793e-02   p_joint 2.041379e-03

Joint ci ratio: 1.624712e-01	ci left: 1.779308e-03	ci right 2.097104e-03	k: 580	n:300000
Cons ci ratio: 4.151866e-02	ci left: 2.825722e-02	ci right 2.945857e-02	k: 8656	n:300000
KS ci ratio: 8.262675e-02	ci left: 7.138859e-03	ci right 7.757380e-03	k: 2233	n:300000
NALCN   300000 perm   146 sec   (2059 perm/sec)   p_kst 7.443333e-03   p_cons 2.885333e-02   p_joint 1.933333e-03

Joint ci ratio: 1.612299e-01	ci left: 1.749765e-03	ci right 2.059665e-03	k: 589	n:310000
Cons ci ratio: 4.081901e-02	ci left: 2.830030e-02	ci right 2.948273e-02	k: 8955	n:310000
KS ci ratio: 8.134470e-02	ci left: 7.132908e-03	ci right 7.740870e-03	k: 2304	n:310000
NALCN   310000 perm   152 sec   (2043 perm/sec)   p_kst 7.432258e-03   p_cons 2.888710e-02   p_joint 1.900000e-03

Joint ci ratio: 1.640442e-01	ci left: 1.635120e-03	ci right 1.930270e-03	k: 569	n:320000
Cons ci ratio: 4.013126e-02	ci left: 2.837178e-02	ci right 2.953677e-02	k: 9264	n:320000
KS ci ratio: 8.015453e-02	ci left: 7.121274e-03	ci right 7.718949e-03	k: 2373	n:320000
NALCN   320000 perm   158 sec   (2028 perm/sec)   p_kst 7.415625e-03   p_cons 2.895000e-02   p_joint 1.778125e-03

Joint ci ratio: 1.622061e-01	ci left: 1.623356e-03	ci right 1.912778e-03	k: 582	n:330000
Cons ci ratio: 3.954312e-02	ci left: 2.834606e-02	ci right 2.949254e-02	k: 9542	n:330000
KS ci ratio: 7.906403e-02	ci left: 7.101493e-03	ci right 7.689025e-03	k: 2439	n:330000
NALCN   330000 perm   164 sec   (2013 perm/sec)   p_kst 7.390909e-03   p_cons 2.891515e-02   p_joint 1.763636e-03

Joint ci ratio: 1.617939e-01	ci left: 1.584073e-03	ci right 1.865705e-03	k: 585	n:340000
Cons ci ratio: 3.892096e-02	ci left: 2.840645e-02	ci right 2.953689e-02	k: 9849	n:340000
KS ci ratio: 7.781379e-02	ci left: 7.120424e-03	ci right 7.699784e-03	k: 2518	n:340000
NALCN   340000 perm   170 sec   (1997 perm/sec)   p_kst 7.405882e-03   p_cons 2.896765e-02   p_joint 1.720588e-03

Joint ci ratio: 1.598959e-01	ci left: 1.577204e-03	ci right 1.854008e-03	k: 599	n:350000
Cons ci ratio: 3.832533e-02	ci left: 2.846635e-02	ci right 2.958146e-02	k: 10157	n:350000
KS ci ratio: 7.679993e-02	ci left: 7.104708e-03	ci right 7.674922e-03	k: 2585	n:350000
NALCN   350000 perm   177 sec   (1983 perm/sec)   p_kst 7.385714e-03   p_cons 2.902000e-02   p_joint 1.711429e-03

Joint ci ratio: 1.499621e-01	ci left: 1.752360e-03	ci right 2.039086e-03	k: 681	n:360000
Cons ci ratio: 3.778040e-02	ci left: 2.848727e-02	ci right 2.958699e-02	k: 10452	n:360000
KS ci ratio: 7.568113e-02	ci left: 7.117168e-03	ci right 7.679694e-03	k: 2662	n:360000
NALCN   360000 perm   183 sec   (1967 perm/sec)   p_kst 7.394444e-03   p_cons 2.903333e-02   p_joint 1.891667e-03

Joint ci ratio: 1.521035e-01	ci left: 1.655582e-03	ci right 1.930693e-03	k: 662	n:370000
Cons ci ratio: 3.727594e-02	ci left: 2.848039e-02	ci right 2.956484e-02	k: 10737	n:370000
KS ci ratio: 7.489956e-02	ci left: 7.073308e-03	ci right 7.626342e-03	k: 2718	n:370000
NALCN   370000 perm   190 sec   (1952 perm/sec)   p_kst 7.345946e-03   p_cons 2.901892e-02   p_joint 1.789189e-03

Joint ci ratio: 1.514223e-01	ci left: 1.627202e-03	ci right 1.896276e-03	k: 668	n:380000
Cons ci ratio: 3.672944e-02	ci left: 2.856785e-02	ci right 2.963935e-02	k: 11058	n:380000
KS ci ratio: 7.402086e-02	ci left: 7.055033e-03	ci right 7.599888e-03	k: 2783	n:380000
NALCN   380000 perm   196 sec   (1935 perm/sec)   p_kst 7.323684e-03   p_cons 2.910000e-02   p_joint 1.757895e-03

Joint ci ratio: 1.494254e-01	ci left: 1.629896e-03	ci right 1.895543e-03	k: 686	n:390000
Cons ci ratio: 3.629178e-02	ci left: 2.851877e-02	ci right 2.957542e-02	k: 11327	n:390000
KS ci ratio: 7.301763e-02	ci left: 7.067943e-03	ci right 7.606083e-03	k: 2860	n:390000
NALCN   390000 perm   203 sec   (1918 perm/sec)   p_kst 7.333333e-03   p_cons 2.904359e-02   p_joint 1.758974e-03

Joint ci ratio: 1.487793e-01	ci left: 1.603587e-03	ci right 1.863716e-03	k: 692	n:400000
Cons ci ratio: 3.582964e-02	ci left: 2.853418e-02	ci right 2.957766e-02	k: 11621	n:400000
KS ci ratio: 7.211596e-02	ci left: 7.067978e-03	ci right 7.599197e-03	k: 2932	n:400000
NALCN   400000 perm   210 sec   (1901 perm/sec)   p_kst 7.330000e-03   p_cons 2.905250e-02   p_joint 1.730000e-03

Joint ci ratio: 1.584678e-01	ci left: 1.372142e-03	ci right 1.610602e-03	k: 610	n:410000
Cons ci ratio: 3.792750e-02	ci left: 2.491087e-02	ci right 2.587634e-02	k: 10410	n:410000
KS ci ratio: 7.135461e-02	ci left: 7.046487e-03	ci right 7.570268e-03	k: 2995	n:410000
NALCN   410000 perm   217 sec   (1887 perm/sec)   p_kst 7.304878e-03   p_cons 2.539024e-02   p_joint 1.487805e-03

Joint ci ratio: 1.648045e-01	ci left: 1.234370e-03	ci right 1.458315e-03	k: 564	n:420000
Cons ci ratio: 3.740660e-02	ci left: 2.500411e-02	ci right 2.595960e-02	k: 10701	n:420000
KS ci ratio: 7.062850e-02	ci left: 7.023709e-03	ci right 7.540266e-03	k: 3057	n:420000
NALCN   420000 perm   224 sec   (1873 perm/sec)   p_kst 7.278571e-03   p_cons 2.547857e-02   p_joint 1.342857e-03

Joint ci ratio: 1.649533e-01	ci left: 1.203432e-03	ci right 1.421981e-03	k: 563	n:430000
Cons ci ratio: 3.698608e-02	ci left: 2.498708e-02	ci right 2.593096e-02	k: 10946	n:430000
KS ci ratio: 6.981150e-02	ci left: 7.024869e-03	ci right 7.535292e-03	k: 3129	n:430000
NALCN   430000 perm   231 sec   (1859 perm/sec)   p_kst 7.276744e-03   p_cons 2.545581e-02   p_joint 1.309302e-03

Joint ci ratio: 1.662896e-01	ci left: 1.156472e-03	ci right 1.368365e-03	k: 554	n:440000
Cons ci ratio: 3.654259e-02	ci left: 2.502044e-02	ci right 2.595400e-02	k: 11213	n:440000
KS ci ratio: 6.902222e-02	ci left: 7.026009e-03	ci right 7.530512e-03	k: 3201	n:440000
NALCN   440000 perm   239 sec   (1844 perm/sec)   p_kst 7.275000e-03   p_cons 2.548409e-02   p_joint 1.259091e-03

Joint ci ratio: 1.639426e-01	ci left: 1.164860e-03	ci right 1.374980e-03	k: 570	n:450000
Cons ci ratio: 3.614700e-02	ci left: 2.500833e-02	ci right 2.593113e-02	k: 11460	n:450000
KS ci ratio: 6.822763e-02	ci left: 7.033683e-03	ci right 7.532693e-03	k: 3276	n:450000
NALCN   450000 perm   246 sec   (1831 perm/sec)   p_kst 7.280000e-03   p_cons 2.546667e-02   p_joint 1.266667e-03

Joint ci ratio: 1.619688e-01	ci left: 1.168730e-03	ci right 1.376763e-03	k: 584	n:460000
Cons ci ratio: 3.574206e-02	ci left: 2.502696e-02	ci right 2.593990e-02	k: 11721	n:460000
KS ci ratio: 6.767373e-02	ci left: 6.996169e-03	ci right 7.488329e-03	k: 3330	n:460000
NALCN   460000 perm   253 sec   (1817 perm/sec)   p_kst 7.239130e-03   p_cons 2.548043e-02   p_joint 1.269565e-03

Joint ci ratio: 1.603328e-01	ci left: 1.168366e-03	ci right 1.374031e-03	k: 596	n:470000
Cons ci ratio: 3.533984e-02	ci left: 2.505963e-02	ci right 2.596325e-02	k: 11989	n:470000
KS ci ratio: 6.696393e-02	ci left: 6.995835e-03	ci right 7.482610e-03	k: 3401	n:470000
NALCN   470000 perm   261 sec   (1804 perm/sec)   p_kst 7.236170e-03   p_cons 2.550851e-02   p_joint 1.268085e-03

Joint ci ratio: 1.652582e-01	ci left: 1.074074e-03	ci right 1.269527e-03	k: 561	n:480000
Cons ci ratio: 3.500222e-02	ci left: 2.501869e-02	ci right 2.591205e-02	k: 12222	n:480000
KS ci ratio: 6.631449e-02	ci left: 6.987345e-03	ci right 7.468632e-03	k: 3468	n:480000
NALCN   480000 perm   268 sec   (1790 perm/sec)   p_kst 7.225000e-03   p_cons 2.546250e-02   p_joint 1.168750e-03

Joint ci ratio: 1.361965e-01	ci left: 1.572788e-03	ci right 1.804597e-03	k: 826	n:490000
Cons ci ratio: 3.626662e-02	ci left: 2.286526e-02	ci right 2.371182e-02	k: 11410	n:490000
KS ci ratio: 6.564619e-02	ci left: 6.987253e-03	ci right 7.463499e-03	k: 3539	n:490000
NALCN   490000 perm   276 sec   (1777 perm/sec)   p_kst 7.222449e-03   p_cons 2.328571e-02   p_joint 1.685714e-03

Joint ci ratio: 1.311340e-01	ci left: 1.666992e-03	ci right 1.902842e-03	k: 891	n:500000
Cons ci ratio: 3.585624e-02	ci left: 2.292724e-02	ci right 2.376630e-02	k: 11672	n:500000
KS ci ratio: 6.500676e-02	ci left: 6.985221e-03	ci right 7.456516e-03	k: 3609	n:500000
NALCN   500000 perm   283 sec   (1764 perm/sec)   p_kst 7.218000e-03   p_cons 2.334400e-02   p_joint 1.782000e-03

Joint ci ratio: 1.298306e-01	ci left: 1.668448e-03	ci right 1.901976e-03	k: 909	n:510000
Cons ci ratio: 3.552048e-02	ci left: 2.290909e-02	ci right 2.373947e-02	k: 11894	n:510000
KS ci ratio: 6.445627e-02	ci left: 6.967855e-03	ci right 7.433849e-03	k: 3671	n:510000
NALCN   510000 perm   291 sec   (1752 perm/sec)   p_kst 7.198039e-03   p_cons 2.332157e-02   p_joint 1.782353e-03

Joint ci ratio: 1.300478e-01	ci left: 1.630778e-03	ci right 1.859446e-03	k: 906	n:520000
Cons ci ratio: 3.517020e-02	ci left: 2.292218e-02	ci right 2.374468e-02	k: 12132	n:520000
KS ci ratio: 6.389368e-02	ci left: 6.956850e-03	ci right 7.417897e-03	k: 3736	n:520000
NALCN   520000 perm   299 sec   (1739 perm/sec)   p_kst 7.184615e-03   p_cons 2.333077e-02   p_joint 1.742308e-03

Joint ci ratio: 1.283598e-01	ci left: 1.643829e-03	ci right 1.871107e-03	k: 930	n:530000
Cons ci ratio: 3.482145e-02	ci left: 2.294604e-02	ci right 2.376107e-02	k: 12376	n:530000
KS ci ratio: 6.336236e-02	ci left: 6.942564e-03	ci right 7.398697e-03	k: 3799	n:530000
NALCN   530000 perm   307 sec   (1727 perm/sec)   p_kst 7.167925e-03   p_cons 2.335094e-02   p_joint 1.754717e-03

Joint ci ratio: 1.277449e-01	ci left: 1.629520e-03	ci right 1.853658e-03	k: 939	n:540000
Cons ci ratio: 3.450807e-02	ci left: 2.293600e-02	ci right 2.374320e-02	k: 12602	n:540000
KS ci ratio: 6.282769e-02	ci left: 6.932468e-03	ci right 7.383955e-03	k: 3864	n:540000
NALCN   540000 perm   315 sec   (1715 perm/sec)   p_kst 7.155556e-03   p_cons 2.333704e-02   p_joint 1.738889e-03

Joint ci ratio: 1.267379e-01	ci left: 1.626297e-03	ci right 1.848096e-03	k: 954	n:550000
Cons ci ratio: 3.417029e-02	ci left: 2.296963e-02	ci right 2.376994e-02	k: 12852	n:550000
KS ci ratio: 6.228240e-02	ci left: 6.928125e-03	ci right 7.375272e-03	k: 3932	n:550000
NALCN   550000 perm   323 sec   (1703 perm/sec)   p_kst 7.149091e-03   p_cons 2.336727e-02   p_joint 1.734545e-03

Joint ci ratio: 1.322652e-01	ci left: 1.462472e-03	ci right 1.671310e-03	k: 876	n:560000
Cons ci ratio: 3.230266e-02	ci left: 2.520916e-02	ci right 2.603861e-02	k: 14348	n:560000
KS ci ratio: 6.159619e-02	ci left: 6.959121e-03	ci right 7.403143e-03	k: 4020	n:560000
NALCN   560000 perm   331 sec   (1691 perm/sec)   p_kst 7.178571e-03   p_cons 2.562143e-02   p_joint 1.564286e-03

Joint ci ratio: 1.312221e-01	ci left: 1.460566e-03	ci right 1.667360e-03	k: 890	n:570000
Cons ci ratio: 3.199921e-02	ci left: 2.524200e-02	ci right 2.606458e-02	k: 14621	n:570000
KS ci ratio: 6.110466e-02	ci left: 6.949316e-03	ci right 7.389049e-03	k: 4085	n:570000
NALCN   570000 perm   339 sec   (1680 perm/sec)   p_kst 7.166667e-03   p_cons 2.565088e-02   p_joint 1.561404e-03

Joint ci ratio: 1.302755e-01	ci left: 1.457065e-03	ci right 1.661759e-03	k: 903	n:580000
Cons ci ratio: 3.172164e-02	ci left: 2.524637e-02	ci right 2.606183e-02	k: 14878	n:580000
KS ci ratio: 6.055129e-02	ci left: 6.956844e-03	ci right 7.392928e-03	k: 4160	n:580000
NALCN   580000 perm   348 sec   (1667 perm/sec)   p_kst 7.172414e-03   p_cons 2.565172e-02   p_joint 1.556897e-03

Joint ci ratio: 1.292080e-01	ci left: 1.456967e-03	ci right 1.659842e-03	k: 918	n:590000
Cons ci ratio: 3.144690e-02	ci left: 2.525735e-02	ci right 2.606597e-02	k: 15139	n:590000
KS ci ratio: 5.998417e-02	ci left: 6.970814e-03	ci right 7.403538e-03	k: 4239	n:590000
NALCN   590000 perm   357 sec   (1653 perm/sec)   p_kst 7.184746e-03   p_cons 2.565932e-02   p_joint 1.555932e-03

Joint ci ratio: 1.315233e-01	ci left: 1.381087e-03	ci right 1.577111e-03	k: 886	n:600000
Cons ci ratio: 3.116879e-02	ci left: 2.528453e-02	ci right 2.608673e-02	k: 15410	n:600000
KS ci ratio: 5.946737e-02	ci left: 6.976125e-03	ci right 7.405320e-03	k: 4313	n:600000
NALCN   600000 perm   366 sec   (1641 perm/sec)   p_kst 7.188333e-03   p_cons 2.568333e-02   p_joint 1.476667e-03

Joint ci ratio: 1.300646e-01	ci left: 1.390160e-03	ci right 1.585115e-03	k: 906	n:610000
Cons ci ratio: 3.092730e-02	ci left: 2.526366e-02	ci right 2.605888e-02	k: 15652	n:610000
KS ci ratio: 5.890289e-02	ci left: 6.995817e-03	ci right 7.421999e-03	k: 4396	n:610000
NALCN   610000 perm   374 sec   (1630 perm/sec)   p_kst 7.206557e-03   p_cons 2.565902e-02   p_joint 1.485246e-03

Joint ci ratio: 1.298512e-01	ci left: 1.372419e-03	ci right 1.564546e-03	k: 909	n:620000
Cons ci ratio: 3.067748e-02	ci left: 2.526591e-02	ci right 2.605466e-02	k: 15908	n:620000
KS ci ratio: 5.838701e-02	ci left: 7.006944e-03	ci right 7.429939e-03	k: 4474	n:620000
NALCN   620000 perm   383 sec   (1619 perm/sec)   p_kst 7.216129e-03   p_cons 2.565806e-02   p_joint 1.466129e-03

Joint ci ratio: 1.290037e-01	ci left: 1.369065e-03	ci right 1.559376e-03	k: 921	n:630000
Cons ci ratio: 3.041141e-02	ci left: 2.530434e-02	ci right 2.608733e-02	k: 16187	n:630000
KS ci ratio: 5.785885e-02	ci left: 7.023991e-03	ci right 7.444051e-03	k: 4556	n:630000
NALCN   630000 perm   392 sec   (1607 perm/sec)   p_kst 7.231746e-03   p_cons 2.569365e-02   p_joint 1.461905e-03

Joint ci ratio: 1.284483e-01	ci left: 1.359771e-03	ci right 1.547913e-03	k: 929	n:640000
Cons ci ratio: 3.016249e-02	ci left: 2.532455e-02	ci right 2.610163e-02	k: 16455	n:640000
KS ci ratio: 5.745716e-02	ci left: 7.012798e-03	ci right 7.429181e-03	k: 4620	n:640000
NALCN   640000 perm   401 sec   (1597 perm/sec)   p_kst 7.218750e-03   p_cons 2.571094e-02   p_joint 1.451562e-03

Joint ci ratio: 1.278318e-01	ci left: 1.352253e-03	ci right 1.538389e-03	k: 938	n:650000
Cons ci ratio: 2.993980e-02	ci left: 2.531055e-02	ci right 2.608138e-02	k: 16701	n:650000
KS ci ratio: 5.711902e-02	ci left: 6.988310e-03	ci right 7.400716e-03	k: 4675	n:650000
NALCN   650000 perm   410 sec   (1586 perm/sec)   p_kst 7.192308e-03   p_cons 2.569385e-02   p_joint 1.443077e-03

Joint ci ratio: 1.278332e-01	ci left: 1.331764e-03	ci right 1.515082e-03	k: 938	n:660000
Cons ci ratio: 2.971657e-02	ci left: 2.530603e-02	ci right 2.607087e-02	k: 16953	n:660000
KS ci ratio: 5.670232e-02	ci left: 6.985484e-03	ci right 7.394617e-03	k: 4744	n:660000
NALCN   660000 perm   419 sec   (1575 perm/sec)   p_kst 7.187879e-03   p_cons 2.568636e-02   p_joint 1.421212e-03

Joint ci ratio: 1.271583e-01	ci left: 1.326336e-03	ci right 1.507870e-03	k: 948	n:670000
Cons ci ratio: 2.949739e-02	ci left: 2.530314e-02	ci right 2.606216e-02	k: 17206	n:670000
KS ci ratio: 5.625931e-02	ci left: 6.991583e-03	ci right 7.397770e-03	k: 4819	n:670000
NALCN   670000 perm   428 sec   (1565 perm/sec)   p_kst 7.192537e-03   p_cons 2.568060e-02   p_joint 1.414925e-03

Joint ci ratio: 1.199683e-01	ci left: 1.473582e-03	ci right 1.663058e-03	k: 1065	n:680000
Cons ci ratio: 2.928987e-02	ci left: 2.528868e-02	ci right 2.604184e-02	k: 17451	n:680000
KS ci ratio: 5.580357e-02	ci left: 7.003315e-03	ci right 7.406782e-03	k: 4898	n:680000
NALCN   680000 perm   437 sec   (1554 perm/sec)   p_kst 7.202941e-03   p_cons 2.566324e-02   p_joint 1.566176e-03

Joint ci ratio: 1.193545e-01	ci left: 1.467691e-03	ci right 1.655375e-03	k: 1076	n:690000
Cons ci ratio: 2.906981e-02	ci left: 2.530344e-02	ci right 2.605128e-02	k: 17716	n:690000
KS ci ratio: 5.542605e-02	ci left: 6.997569e-03	ci right 7.397890e-03	k: 4965	n:690000
NALCN   690000 perm   447 sec   (1544 perm/sec)   p_kst 7.195652e-03   p_cons 2.567536e-02   p_joint 1.559420e-03

Joint ci ratio: 1.227710e-01	ci left: 1.364985e-03	ci right 1.544895e-03	k: 1017	n:700000
Cons ci ratio: 2.886865e-02	ci left: 2.529368e-02	ci right 2.603597e-02	k: 17964	n:700000
KS ci ratio: 5.501207e-02	ci left: 7.003267e-03	ci right 7.400827e-03	k: 5040	n:700000
NALCN   700000 perm   457 sec   (1533 perm/sec)   p_kst 7.200000e-03   p_cons 2.566286e-02   p_joint 1.452857e-03

Joint ci ratio: 1.230145e-01	ci left: 1.340298e-03	ci right 1.517331e-03	k: 1013	n:710000
Cons ci ratio: 2.865788e-02	ci left: 2.530799e-02	ci right 2.604519e-02	k: 18229	n:710000
KS ci ratio: 5.464490e-02	ci left: 6.999091e-03	ci right 7.393678e-03	k: 5108	n:710000
NALCN   710000 perm   466 sec   (1523 perm/sec)   p_kst 7.194366e-03   p_cons 2.567465e-02   p_joint 1.426761e-03

Joint ci ratio: 1.219959e-01	ci left: 1.344571e-03	ci right 1.520591e-03	k: 1030	n:720000
Cons ci ratio: 2.845720e-02	ci left: 2.531226e-02	ci right 2.604434e-02	k: 18487	n:720000
KS ci ratio: 5.433257e-02	ci left: 6.982708e-03	ci right 7.374051e-03	k: 5167	n:720000
NALCN   720000 perm   475 sec   (1514 perm/sec)   p_kst 7.176389e-03   p_cons 2.567639e-02   p_joint 1.430556e-03

Joint ci ratio: 1.277739e-01	ci left: 1.205381e-03	ci right 1.371220e-03	k: 939	n:730000
Cons ci ratio: 2.826686e-02	ci left: 2.530555e-02	ci right 2.603246e-02	k: 18737	n:730000
KS ci ratio: 5.397356e-02	ci left: 6.980295e-03	ci right 7.368837e-03	k: 5236	n:730000
NALCN   730000 perm   485 sec   (1505 perm/sec)   p_kst 7.172603e-03   p_cons 2.566712e-02   p_joint 1.286301e-03

Joint ci ratio: 1.266336e-01	ci left: 1.211335e-03	ci right 1.376393e-03	k: 956	n:740000
Cons ci ratio: 2.807498e-02	ci left: 2.530844e-02	ci right 2.603042e-02	k: 18994	n:740000
KS ci ratio: 5.365723e-02	ci left: 6.968622e-03	ci right 7.354170e-03	k: 5298	n:740000
NALCN   740000 perm   495 sec   (1495 perm/sec)   p_kst 7.159459e-03   p_cons 2.566757e-02   p_joint 1.291892e-03

Joint ci ratio: 1.255232e-01	ci left: 1.217135e-03	ci right 1.381422e-03	k: 973	n:750000
Cons ci ratio: 2.788621e-02	ci left: 2.531259e-02	ci right 2.602975e-02	k: 19252	n:750000
KS ci ratio: 5.329636e-02	ci left: 6.970423e-03	ci right 7.353398e-03	k: 5370	n:750000
NALCN   750000 perm   505 sec   (1486 perm/sec)   p_kst 7.160000e-03   p_cons 2.566933e-02   p_joint 1.297333e-03

Joint ci ratio: 1.301555e-01	ci left: 1.114503e-03	ci right 1.270917e-03	k: 905	n:760000
Cons ci ratio: 2.769610e-02	ci left: 2.532579e-02	ci right 2.603836e-02	k: 19517	n:760000
KS ci ratio: 5.288887e-02	ci left: 6.986469e-03	ci right 7.367302e-03	k: 5453	n:760000
NALCN   760000 perm   515 sec   (1476 perm/sec)   p_kst 7.175000e-03   p_cons 2.568026e-02   p_joint 1.190789e-03

Joint ci ratio: 1.292316e-01	ci left: 1.116365e-03	ci right 1.271842e-03	k: 918	n:770000
Cons ci ratio: 2.752268e-02	ci left: 2.531545e-02	ci right 2.602319e-02	k: 19764	n:770000
KS ci ratio: 5.257193e-02	ci left: 6.980320e-03	ci right 7.358467e-03	k: 5519	n:770000
NALCN   770000 perm   525 sec   (1467 perm/sec)   p_kst 7.167532e-03   p_cons 2.566753e-02   p_joint 1.192208e-03

Joint ci ratio: 1.286037e-01	ci left: 1.113219e-03	ci right 1.267447e-03	k: 927	n:780000
Cons ci ratio: 2.733286e-02	ci left: 2.534104e-02	ci right 2.604454e-02	k: 20039	n:780000
KS ci ratio: 5.218071e-02	ci left: 6.995846e-03	ci right 7.371930e-03	k: 5602	n:780000
NALCN   780000 perm   535 sec   (1458 perm/sec)   p_kst 7.182051e-03   p_cons 2.569103e-02   p_joint 1.188462e-03

Joint ci ratio: 1.146646e-01	ci left: 1.392495e-03	ci right 1.563093e-03	k: 1166	n:790000
Cons ci ratio: 2.716475e-02	ci left: 2.533331e-02	ci right 2.603220e-02	k: 20288	n:790000
KS ci ratio: 5.184404e-02	ci left: 6.998495e-03	ci right 7.372221e-03	k: 5675	n:790000
NALCN   790000 perm   545 sec   (1449 perm/sec)   p_kst 7.183544e-03   p_cons 2.568101e-02   p_joint 1.475949e-03

Joint ci ratio: 1.138865e-01	ci left: 1.394517e-03	ci right 1.564125e-03	k: 1182	n:800000
Cons ci ratio: 2.699095e-02	ci left: 2.534193e-02	ci right 2.603651e-02	k: 20550	n:800000
KS ci ratio: 5.152734e-02	ci left: 6.997383e-03	ci right 7.368699e-03	k: 5745	n:800000
NALCN   800000 perm   555 sec   (1440 perm/sec)   p_kst 7.181250e-03   p_cons 2.568750e-02   p_joint 1.477500e-03

Joint ci ratio: 1.130296e-01	ci left: 1.398893e-03	ci right 1.567668e-03	k: 1200	n:810000
Cons ci ratio: 2.682838e-02	ci left: 2.533563e-02	ci right 2.602580e-02	k: 20800	n:810000
KS ci ratio: 5.122968e-02	ci left: 6.992648e-03	ci right 7.361507e-03	k: 5812	n:810000
NALCN   810000 perm   566 sec   (1432 perm/sec)   p_kst 7.175309e-03   p_cons 2.567901e-02   p_joint 1.481481e-03

Joint ci ratio: 1.124229e-01	ci left: 1.397240e-03	ci right 1.564850e-03	k: 1213	n:820000
Cons ci ratio: 2.667392e-02	ci left: 2.531980e-02	ci right 2.600551e-02	k: 21042	n:820000
KS ci ratio: 5.098956e-02	ci left: 6.973586e-03	ci right 7.339664e-03	k: 5867	n:820000
NALCN   820000 perm   576 sec   (1423 perm/sec)   p_kst 7.154878e-03   p_cons 2.566098e-02   p_joint 1.479268e-03

Joint ci ratio: 1.118715e-01	ci left: 1.394458e-03	ci right 1.560860e-03	k: 1225	n:830000
Cons ci ratio: 2.652273e-02	ci left: 2.530317e-02	ci right 2.598448e-02	k: 21283	n:830000
KS ci ratio: 5.057676e-02	ci left: 7.003764e-03	ci right 7.368363e-03	k: 5963	n:830000
NALCN   830000 perm   587 sec   (1414 perm/sec)   p_kst 7.184337e-03   p_cons 2.564217e-02   p_joint 1.475904e-03

Joint ci ratio: 1.169497e-01	ci left: 1.257583e-03	ci right 1.414935e-03	k: 1121	n:840000
Cons ci ratio: 2.636591e-02	ci left: 2.530232e-02	ci right 2.597952e-02	k: 21537	n:840000
KS ci ratio: 5.026582e-02	ci left: 7.007371e-03	ci right 7.369850e-03	k: 6037	n:840000
NALCN   840000 perm   598 sec   (1405 perm/sec)   p_kst 7.186905e-03   p_cons 2.563929e-02   p_joint 1.334524e-03

Joint ci ratio: 1.166906e-01	ci left: 1.248498e-03	ci right 1.404344e-03	k: 1126	n:850000
Cons ci ratio: 2.621802e-02	ci left: 2.528982e-02	ci right 2.596283e-02	k: 21781	n:850000
KS ci ratio: 5.002240e-02	ci left: 6.993471e-03	ci right 7.353429e-03	k: 6096	n:850000
NALCN   850000 perm   610 sec   (1394 perm/sec)   p_kst 7.171765e-03   p_cons 2.562471e-02   p_joint 1.324706e-03

Joint ci ratio: 1.165879e-01	ci left: 1.236238e-03	ci right 1.390408e-03	k: 1128	n:860000
Cons ci ratio: 2.606287e-02	ci left: 2.529610e-02	ci right 2.596524e-02	k: 22041	n:860000
KS ci ratio: 4.973774e-02	ci left: 6.992532e-03	ci right 7.350334e-03	k: 6166	n:860000
NALCN   860000 perm   621 sec   (1385 perm/sec)   p_kst 7.169767e-03   p_cons 2.562907e-02   p_joint 1.311628e-03

Joint ci ratio: 1.041248e-01	ci left: 1.541731e-03	ci right 1.712189e-03	k: 1414	n:870000
Cons ci ratio: 2.590270e-02	ci left: 2.531710e-02	ci right 2.598262e-02	k: 22314	n:870000
KS ci ratio: 4.944592e-02	ci left: 6.995026e-03	ci right 7.350796e-03	k: 6239	n:870000
NALCN   870000 perm   632 sec   (1376 perm/sec)   p_kst 7.171264e-03   p_cons 2.564828e-02   p_joint 1.625287e-03

Joint ci ratio: 1.102230e-01	ci left: 1.356103e-03	ci right 1.515389e-03	k: 1262	n:880000
Cons ci ratio: 2.575656e-02	ci left: 2.531618e-02	ci right 2.597786e-02	k: 22568	n:880000
KS ci ratio: 4.910827e-02	ci left: 7.012062e-03	ci right 7.366194e-03	k: 6325	n:880000
NALCN   880000 perm   644 sec   (1367 perm/sec)   p_kst 7.187500e-03   p_cons 2.564545e-02   p_joint 1.434091e-03

Joint ci ratio: 1.094029e-01	ci left: 1.361628e-03	ci right 1.520297e-03	k: 1281	n:890000
Cons ci ratio: 2.561057e-02	ci left: 2.531975e-02	ci right 2.597772e-02	k: 22826	n:890000
KS ci ratio: 4.881579e-02	ci left: 7.017623e-03	ci right 7.369866e-03	k: 6401	n:890000
NALCN   890000 perm   655 sec   (1358 perm/sec)   p_kst 7.192135e-03   p_cons 2.564719e-02   p_joint 1.439326e-03

Joint ci ratio: 1.088946e-01	ci left: 1.359468e-03	ci right 1.517102e-03	k: 1293	n:900000
Cons ci ratio: 2.548574e-02	ci left: 2.528682e-02	ci right 2.594068e-02	k: 23051	n:900000
KS ci ratio: 4.854358e-02	ci left: 7.018676e-03	ci right 7.368952e-03	k: 6473	n:900000
NALCN   900000 perm   666 sec   (1350 perm/sec)   p_kst 7.192222e-03   p_cons 2.561222e-02   p_joint 1.436667e-03

Joint ci ratio: 9.840789e-02	ci left: 1.654982e-03	ci right 1.827335e-03	k: 1583	n:910000
Cons ci ratio: 2.534093e-02	ci left: 2.529721e-02	ci right 2.594757e-02	k: 23315	n:910000
KS ci ratio: 4.828702e-02	ci left: 7.016453e-03	ci right 7.364717e-03	k: 6542	n:910000
NALCN   910000 perm   678 sec   (1343 perm/sec)   p_kst 7.189011e-03   p_cons 2.562088e-02   p_joint 1.739560e-03

Outputting figure to mutsig2_images.part000000000111/NALCN.25_5389_910000_0.007189_0.025621_0.0017396.png
                gene_name: NALCN
               theta_stop: 0.098 
                    nperm: 910000 
                     p_ks: 0.0072 
        ci_ks_bounds_left: 0.0070 
       ci_ks_bounds_right: 0.0074 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.0017 
     ci_joint_bounds_left: 0.0017 
    ci_joint_bounds_right: 0.0018 

Current progress: 1 percent done.
MYO3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.545165e-03	ci left: 9.944420e-01	ci right 9.970562e-01	k: 9959	n:10000
KS ci ratio: 2.041202e-02	ci left: 7.785383e-01	ci right 7.946944e-01	k: 7867	n:10000
MYO3A   10000 perm   3 sec   (3380 perm/sec)   p_kst 7.867000e-01   p_cons 9.959000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYO3A.23_4983_10000_0.7867_0.9959_1.png
                gene_name: MYO3A
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
MYO16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.003429e-01	ci left: 1.257171e-01	ci right 1.390978e-01	k: 1323	n:10000
Cons ci ratio: 8.285235e-02	ci left: 1.752679e-01	ci right 1.905173e-01	k: 1828	n:10000
KS ci ratio: 9.846546e-02	ci left: 1.300234e-01	ci right 1.435889e-01	k: 1367	n:10000
MYO16   10000 perm   3 sec   (3136 perm/sec)   p_kst 1.367000e-01   p_cons 1.828000e-01   p_joint 1.323000e-01

Joint ci ratio: 7.832365e-02	ci left: 1.069239e-01	ci right 1.156895e-01	k: 2225	n:20000
Cons ci ratio: 6.309995e-02	ci left: 1.566219e-01	ci right 1.668767e-01	k: 3234	n:20000
KS ci ratio: 6.917347e-02	ci left: 1.335435e-01	ci right 1.431619e-01	k: 2766	n:20000
MYO16   20000 perm   7 sec   (2897 perm/sec)   p_kst 1.383000e-01   p_cons 1.617000e-01   p_joint 1.112500e-01

Outputting figure to mutsig2_images.part000000000111/MYO16.22_5713_20000_0.1383_0.1617_0.11125.png
                gene_name: MYO16
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 4 percent done.
MYO9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.087845e-02	ci left: 3.629130e-01	ci right 3.819614e-01	k: 3724	n:10000
Cons ci ratio: 5.934121e-02	ci left: 2.946952e-01	ci right 3.128192e-01	k: 3037	n:10000
KS ci ratio: 5.917331e-02	ci left: 2.958849e-01	ci right 3.140289e-01	k: 3049	n:10000
MYO9A   10000 perm   3 sec   (3001 perm/sec)   p_kst 3.049000e-01   p_cons 3.037000e-01   p_joint 3.724000e-01

Outputting figure to mutsig2_images.part000000000111/MYO9A.22_7811_10000_0.3049_0.3037_0.3724.png
                gene_name: MYO9A
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 6 percent done.
MYO18B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.080951e-02	ci left: 9.242033e-01	ci right 9.343450e-01	k: 9294	n:10000
KS ci ratio: 7.182775e-03	ci left: 9.639407e-01	ci right 9.709836e-01	k: 9676	n:10000
MYO18B   10000 perm   3 sec   (2993 perm/sec)   p_kst 9.676000e-01   p_cons 9.294000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYO18B.20_7872_10000_0.9676_0.9294_1.png
                gene_name: MYO18B
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
MYST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.616482e-02	ci left: 8.476398e-01	ci right 8.615529e-01	k: 8547	n:10000
Cons ci ratio: 3.436366e-02	ci left: 5.556165e-01	ci right 5.751454e-01	k: 5654	n:10000
KS ci ratio: 2.688917e-02	ci left: 6.707558e-01	ci right 6.891393e-01	k: 6800	n:10000
MYST3   10000 perm   3 sec   (3572 perm/sec)   p_kst 6.800000e-01   p_cons 5.654000e-01   p_joint 8.547000e-01

Outputting figure to mutsig2_images.part000000000111/MYST3.18_6079_10000_0.68_0.5654_0.8547.png
                gene_name: MYST3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 9 percent done.
MYO1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.578270e-01	ci left: 5.349797e-02	ci right 6.276153e-02	k: 580	n:10000
Cons ci ratio: 1.000608e-02	ci left: 9.340264e-01	ci right 9.435160e-01	k: 9389	n:10000
KS ci ratio: 3.198132e-01	ci left: 1.243336e-02	ci right 1.725533e-02	k: 147	n:10000
MYO1B   10000 perm   3 sec   (3951 perm/sec)   p_kst 1.470000e-02   p_cons 9.389000e-01   p_joint 5.800000e-02

Joint ci ratio: 1.217843e-01	ci left: 4.624321e-02	ci right 5.228870e-02	k: 984	n:20000
Cons ci ratio: 7.274334e-03	ci left: 9.321093e-01	ci right 9.389634e-01	k: 18712	n:20000
KS ci ratio: 2.242329e-01	ci left: 1.336119e-02	ci right 1.678192e-02	k: 300	n:20000
MYO1B   20000 perm   5 sec   (3637 perm/sec)   p_kst 1.500000e-02   p_cons 9.356000e-01   p_joint 4.920000e-02

Joint ci ratio: 1.134068e-01	ci left: 3.612399e-02	ci right 4.049934e-02	k: 1148	n:30000
Cons ci ratio: 5.978213e-03	ci left: 9.319473e-01	ci right 9.375681e-01	k: 28044	n:30000
KS ci ratio: 1.913204e-01	ci left: 1.247871e-02	ci right 1.515000e-02	k: 413	n:30000
MYO1B   30000 perm   9 sec   (3522 perm/sec)   p_kst 1.376667e-02   p_cons 9.348000e-01   p_joint 3.826667e-02

Joint ci ratio: 1.171583e-01	ci left: 2.562780e-02	ci right 2.884133e-02	k: 1088	n:40000
Cons ci ratio: 5.145128e-03	ci left: 9.330993e-01	ci right 9.379372e-01	k: 37422	n:40000
KS ci ratio: 1.681779e-01	ci left: 1.227219e-02	ci right 1.454927e-02	k: 535	n:40000
MYO1B   40000 perm   12 sec   (3446 perm/sec)   p_kst 1.337500e-02   p_cons 9.355500e-01   p_joint 2.720000e-02

Joint ci ratio: 9.398794e-02	ci left: 3.203766e-02	ci right 3.521679e-02	k: 1680	n:50000
Cons ci ratio: 4.430415e-03	ci left: 9.378624e-01	ci right 9.420464e-01	k: 46999	n:50000
KS ci ratio: 1.491868e-01	ci left: 1.260310e-02	ci right 1.465395e-02	k: 680	n:50000
MYO1B   50000 perm   15 sec   (3385 perm/sec)   p_kst 1.360000e-02   p_cons 9.399800e-01   p_joint 3.360000e-02

Joint ci ratio: 7.622524e-02	ci left: 4.060518e-02	ci right 4.383929e-02	k: 2532	n:60000
Cons ci ratio: 4.336725e-03	ci left: 9.295509e-01	ci right 9.336073e-01	k: 55896	n:60000
KS ci ratio: 1.349549e-01	ci left: 1.293011e-02	ci right 1.481734e-02	k: 831	n:60000
MYO1B   60000 perm   18 sec   (3325 perm/sec)   p_kst 1.385000e-02   p_cons 9.316000e-01   p_joint 4.220000e-02

Joint ci ratio: 6.853953e-02	ci left: 4.311068e-02	ci right 4.618435e-02	k: 3124	n:70000
Cons ci ratio: 4.007322e-03	ci left: 9.299508e-01	ci right 9.336990e-01	k: 65229	n:70000
KS ci ratio: 1.244682e-01	ci left: 1.310114e-02	ci right 1.485377e-02	k: 977	n:70000
MYO1B   70000 perm   21 sec   (3267 perm/sec)   p_kst 1.395714e-02   p_cons 9.318429e-01   p_joint 4.462857e-02

Joint ci ratio: 6.808461e-02	ci left: 3.843122e-02	ci right 4.115228e-02	k: 3182	n:80000
Cons ci ratio: 3.739770e-03	ci left: 9.303727e-01	ci right 9.338709e-01	k: 74571	n:80000
KS ci ratio: 1.152182e-01	ci left: 1.344012e-02	ci right 1.509538e-02	k: 1140	n:80000
MYO1B   80000 perm   25 sec   (3216 perm/sec)   p_kst 1.425000e-02   p_cons 9.321375e-01   p_joint 3.977500e-02

Joint ci ratio: 7.052401e-02	ci left: 3.201719e-02	ci right 3.436858e-02	k: 2986	n:90000
Cons ci ratio: 3.519473e-03	ci left: 9.307065e-01	ci right 9.339989e-01	k: 83913	n:90000
KS ci ratio: 1.090010e-01	ci left: 1.339391e-02	ci right 1.494875e-02	k: 1274	n:90000
MYO1B   90000 perm   28 sec   (3162 perm/sec)   p_kst 1.415556e-02   p_cons 9.323667e-01   p_joint 3.317778e-02

Joint ci ratio: 7.082852e-02	ci left: 2.866633e-02	ci right 3.078106e-02	k: 2971	n:100000
Cons ci ratio: 3.346163e-03	ci left: 9.305131e-01	ci right 9.336418e-01	k: 93209	n:100000
KS ci ratio: 1.035435e-01	ci left: 1.339785e-02	ci right 1.487053e-02	k: 1412	n:100000
MYO1B   100000 perm   32 sec   (3117 perm/sec)   p_kst 1.412000e-02   p_cons 9.320900e-01   p_joint 2.971000e-02

Joint ci ratio: 6.627060e-02	ci left: 2.980471e-02	ci right 3.185649e-02	k: 3390	n:110000
Cons ci ratio: 3.189029e-03	ci left: 9.306433e-01	ci right 9.336248e-01	k: 102536	n:110000
KS ci ratio: 9.883134e-02	ci left: 1.340267e-02	ci right 1.480494e-02	k: 1550	n:110000
MYO1B   110000 perm   36 sec   (3072 perm/sec)   p_kst 1.409091e-02   p_cons 9.321455e-01   p_joint 3.081818e-02

Outputting figure to mutsig2_images.part000000000111/MYO1B.15_3531_110000_0.014091_0.93215_0.030818.png
                gene_name: MYO1B
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 10 percent done.
MYT1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.748140e-02	ci left: 2.437115e-01	ci right 2.608330e-01	k: 2522	n:10000
Cons ci ratio: 8.327051e-02	ci left: 1.737925e-01	ci right 1.889935e-01	k: 1813	n:10000
KS ci ratio: 8.776711e-02	ci left: 1.589518e-01	ci right 1.736431e-01	k: 1662	n:10000
MYT1L   10000 perm   2 sec   (4065 perm/sec)   p_kst 1.662000e-01   p_cons 1.813000e-01   p_joint 2.522000e-01

Outputting figure to mutsig2_images.part000000000111/MYT1L.15_3635_10000_0.1662_0.1813_0.2522.png
                gene_name: MYT1L
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 12 percent done.
MYT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.592598e-02	ci left: 2.525117e-01	ci right 2.698276e-01	k: 2611	n:10000
Cons ci ratio: 4.231157e-02	ci left: 4.519911e-01	ci right 4.716311e-01	k: 4618	n:10000
KS ci ratio: 9.764019e-02	ci left: 1.319816e-01	ci right 1.456295e-01	k: 1387	n:10000
MYT1   10000 perm   2 sec   (4245 perm/sec)   p_kst 1.387000e-01   p_cons 4.618000e-01   p_joint 2.611000e-01

Outputting figure to mutsig2_images.part000000000111/MYT1.13_3450_10000_0.1387_0.4618_0.2611.png
                gene_name: MYT1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 13 percent done.
NAALAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.035121e-02	ci left: 7.795518e-01	ci right 7.956803e-01	k: 7877	n:10000
Cons ci ratio: 9.047443e-03	ci left: 9.450255e-01	ci right 9.537104e-01	k: 9495	n:10000
KS ci ratio: 3.297882e-02	ci left: 5.757708e-01	ci right 5.951794e-01	k: 5855	n:10000
NAALAD2   10000 perm   2 sec   (4234 perm/sec)   p_kst 5.855000e-01   p_cons 9.495000e-01   p_joint 7.877000e-01

Outputting figure to mutsig2_images.part000000000111/NAALAD2.13_2299_10000_0.5855_0.9495_0.7877.png
                gene_name: NAALAD2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 14 percent done.
MYO10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.579714e-01	ci left: 5.340171e-02	ci right 6.265786e-02	k: 579	n:10000
Cons ci ratio: 1.181872e-01	ci left: 9.321372e-02	ci right 1.050210e-01	k: 990	n:10000
KS ci ratio: 9.530083e-02	ci left: 1.377611e-01	ci right 1.516466e-01	k: 1446	n:10000
MYO10   10000 perm   3 sec   (3527 perm/sec)   p_kst 1.446000e-01   p_cons 9.900000e-02   p_joint 5.790000e-02

Joint ci ratio: 7.935020e-02	ci left: 1.044183e-01	ci right 1.130958e-01	k: 2174	n:20000
Cons ci ratio: 7.856213e-02	ci left: 1.063343e-01	ci right 1.150793e-01	k: 2213	n:20000
KS ci ratio: 6.670328e-02	ci left: 1.423162e-01	ci right 1.521866e-01	k: 2944	n:20000
MYO10   20000 perm   6 sec   (3242 perm/sec)   p_kst 1.472000e-01   p_cons 1.106500e-01   p_joint 1.087000e-01

Outputting figure to mutsig2_images.part000000000111/MYO10.12_6341_20000_0.1472_0.11065_0.1087.png
                gene_name: MYO10
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 16 percent done.
MYO1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.851646e-02	ci left: 6.444822e-01	ci right 6.632281e-01	k: 6539	n:10000
Cons ci ratio: 2.463247e-02	ci left: 7.079580e-01	ci right 7.257155e-01	k: 7169	n:10000
KS ci ratio: 4.150350e-02	ci left: 4.615758e-01	ci right 4.812409e-01	k: 4714	n:10000
MYO1A   10000 perm   2 sec   (4592 perm/sec)   p_kst 4.714000e-01   p_cons 7.169000e-01   p_joint 6.539000e-01

Outputting figure to mutsig2_images.part000000000111/MYO1A.12_3240_10000_0.4714_0.7169_0.6539.png
                gene_name: MYO1A
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 17 percent done.
MYOM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.382713e-02	ci left: 7.213844e-01	ci right 7.388814e-01	k: 7302	n:10000
Cons ci ratio: 2.837173e-02	ci left: 6.467962e-01	ci right 6.655127e-01	k: 6562	n:10000
KS ci ratio: 3.421012e-02	ci left: 5.578216e-01	ci right 5.773390e-01	k: 5676	n:10000
MYOM1   10000 perm   3 sec   (3777 perm/sec)   p_kst 5.676000e-01   p_cons 6.562000e-01   p_joint 7.302000e-01

Outputting figure to mutsig2_images.part000000000111/MYOM1.12_5206_10000_0.5676_0.6562_0.7302.png
                gene_name: MYOM1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 19 percent done.
MYO15A
Processing conservation and coverage...
92% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
Cons ci ratio: 2.610159e-02	ci left: 6.836528e-01	ci right 7.018348e-01	k: 6928	n:10000
KS ci ratio: 1.410433e-01	ci left: 6.662205e-02	ci right 7.682914e-02	k: 716	n:10000
MYO15A   10000 perm   4 sec   (2613 perm/sec)   p_kst 7.160000e-02   p_cons 6.928000e-01   p_joint 1.422000e-01

Joint ci ratio: 6.347486e-02	ci left: 1.550426e-01	ci right 1.652564e-01	k: 3202	n:20000
Cons ci ratio: 1.864598e-02	ci left: 6.819795e-01	ci right 6.948657e-01	k: 13769	n:20000
KS ci ratio: 9.706290e-02	ci left: 7.172876e-02	ci right 7.909525e-02	k: 1507	n:20000
MYO15A   20000 perm   8 sec   (2439 perm/sec)   p_kst 7.535000e-02   p_cons 6.884500e-01   p_joint 1.601000e-01

Outputting figure to mutsig2_images.part000000000111/MYO15A.11_10849_20000_0.07535_0.68845_0.1601.png
                gene_name: MYO15A
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 20 percent done.
MYO5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
Cons ci ratio: 1.027723e-01	ci left: 1.204354e-01	ci right 1.335827e-01	k: 1269	n:10000
KS ci ratio: 5.421642e-01	ci left: 3.799572e-03	ci right 6.700171e-03	k: 51	n:10000
MYO5C   10000 perm   3 sec   (3478 perm/sec)   p_kst 5.100000e-03   p_cons 1.269000e-01   p_joint 7.700000e-03

Joint ci ratio: 3.552752e-01	ci left: 4.977027e-03	ci right 7.170311e-03	k: 120	n:20000
Cons ci ratio: 7.599955e-02	ci left: 1.129205e-01	ci right 1.218911e-01	k: 2347	n:20000
KS ci ratio: 3.744341e-01	ci left: 4.431766e-03	ci right 6.515982e-03	k: 108	n:20000
MYO5C   20000 perm   6 sec   (3239 perm/sec)   p_kst 5.400000e-03   p_cons 1.173500e-01   p_joint 6.000000e-03

Joint ci ratio: 2.132920e-01	ci left: 9.945298e-03	ci right 1.235078e-02	k: 333	n:30000
Cons ci ratio: 5.994223e-02	ci left: 1.210142e-01	ci right 1.285253e-01	k: 3742	n:30000
KS ci ratio: 3.160988e-01	ci left: 4.294810e-03	ci right 5.936614e-03	k: 152	n:30000
MYO5C   30000 perm   10 sec   (3129 perm/sec)   p_kst 5.066667e-03   p_cons 1.247333e-01   p_joint 1.110000e-02

Joint ci ratio: 2.101310e-01	ci left: 7.718433e-03	ci right 9.553971e-03	k: 344	n:40000
Cons ci ratio: 5.154452e-02	ci left: 1.230593e-01	ci right 1.295950e-01	k: 5052	n:40000
KS ci ratio: 2.785964e-01	ci left: 4.239341e-03	ci right 5.634023e-03	k: 196	n:40000
MYO5C   40000 perm   13 sec   (3033 perm/sec)   p_kst 4.900000e-03   p_cons 1.263000e-01   p_joint 8.600000e-03

Joint ci ratio: 2.295195e-01	ci left: 5.134365e-03	ci right 6.483983e-03	k: 289	n:50000
Cons ci ratio: 4.590864e-02	ci left: 1.243308e-01	ci right 1.301926e-01	k: 6362	n:50000
KS ci ratio: 2.397081e-01	ci left: 4.682435e-03	ci right 5.976019e-03	k: 265	n:50000
MYO5C   50000 perm   17 sec   (2992 perm/sec)   p_kst 5.300000e-03   p_cons 1.272400e-01   p_joint 5.780000e-03

Joint ci ratio: 2.165163e-01	ci left: 4.845061e-03	ci right 6.036878e-03	k: 325	n:60000
Cons ci ratio: 4.169190e-02	ci left: 1.257329e-01	ci right 1.311031e-01	k: 7704	n:60000
KS ci ratio: 2.185477e-01	ci left: 4.750485e-03	ci right 5.931473e-03	k: 319	n:60000
MYO5C   60000 perm   20 sec   (2938 perm/sec)   p_kst 5.316667e-03   p_cons 1.284000e-01   p_joint 5.416667e-03

Joint ci ratio: 2.090068e-01	ci left: 4.477410e-03	ci right 5.535691e-03	k: 349	n:70000
Cons ci ratio: 3.844522e-02	ci left: 1.268226e-01	ci right 1.318081e-01	k: 9051	n:70000
KS ci ratio: 1.976871e-01	ci left: 5.033459e-03	ci right 6.150982e-03	k: 390	n:70000
MYO5C   70000 perm   24 sec   (2889 perm/sec)   p_kst 5.571429e-03   p_cons 1.293000e-01   p_joint 4.985714e-03

Joint ci ratio: 1.643312e-01	ci left: 6.481906e-03	ci right 7.654269e-03	k: 564	n:80000
Cons ci ratio: 3.665551e-02	ci left: 1.227777e-01	ci right 1.273746e-01	k: 10005	n:80000
KS ci ratio: 1.826434e-01	ci left: 5.201998e-03	ci right 6.259331e-03	k: 457	n:80000
MYO5C   80000 perm   28 sec   (2846 perm/sec)   p_kst 5.712500e-03   p_cons 1.250625e-01   p_joint 7.050000e-03

Joint ci ratio: 1.555039e-01	ci left: 6.465691e-03	ci right 7.566444e-03	k: 630	n:90000
Cons ci ratio: 3.465203e-02	ci left: 1.223276e-01	ci right 1.266522e-01	k: 11203	n:90000
KS ci ratio: 1.702563e-01	ci left: 5.356874e-03	ci right 6.364265e-03	k: 526	n:90000
MYO5C   90000 perm   32 sec   (2806 perm/sec)   p_kst 5.844444e-03   p_cons 1.244778e-01   p_joint 7.000000e-03

Joint ci ratio: 1.558075e-01	ci left: 5.799743e-03	ci right 6.789221e-03	k: 628	n:100000
Cons ci ratio: 3.291594e-02	ci left: 1.221618e-01	ci right 1.262600e-01	k: 12420	n:100000
KS ci ratio: 1.625778e-01	ci left: 5.309942e-03	ci right 6.259068e-03	k: 577	n:100000
MYO5C   100000 perm   36 sec   (2763 perm/sec)   p_kst 5.770000e-03   p_cons 1.242000e-01   p_joint 6.280000e-03

Joint ci ratio: 1.497483e-01	ci left: 5.727136e-03	ci right 6.662823e-03	k: 680	n:110000
Cons ci ratio: 3.142498e-02	ci left: 1.219765e-01	ci right 1.258798e-01	k: 13631	n:110000
KS ci ratio: 1.549874e-01	ci left: 5.333555e-03	ci right 6.238256e-03	k: 635	n:110000
MYO5C   110000 perm   40 sec   (2734 perm/sec)   p_kst 5.772727e-03   p_cons 1.239182e-01   p_joint 6.181818e-03

Joint ci ratio: 1.486932e-01	ci left: 5.330014e-03	ci right 6.194134e-03	k: 690	n:120000
Cons ci ratio: 2.895588e-02	ci left: 1.305699e-01	ci right 1.344145e-01	k: 15898	n:120000
KS ci ratio: 1.485851e-01	ci left: 5.338039e-03	ci right 6.202775e-03	k: 691	n:120000
MYO5C   120000 perm   45 sec   (2692 perm/sec)   p_kst 5.758333e-03   p_cons 1.324833e-01   p_joint 5.750000e-03

Joint ci ratio: 1.420589e-01	ci left: 5.409261e-03	ci right 6.243784e-03	k: 756	n:130000
Cons ci ratio: 2.782356e-02	ci left: 1.306155e-01	ci right 1.343086e-01	k: 17219	n:130000
KS ci ratio: 1.425331e-01	ci left: 5.372161e-03	ci right 6.203963e-03	k: 751	n:130000
MYO5C   130000 perm   49 sec   (2666 perm/sec)   p_kst 5.776923e-03   p_cons 1.324538e-01   p_joint 5.815385e-03

Joint ci ratio: 1.537540e-01	ci left: 4.266004e-03	ci right 4.983322e-03	k: 646	n:140000
Cons ci ratio: 2.680614e-02	ci left: 1.307281e-01	ci right 1.342871e-01	k: 18550	n:140000
KS ci ratio: 1.390728e-01	ci left: 5.250279e-03	ci right 6.041836e-03	k: 789	n:140000
MYO5C   140000 perm   53 sec   (2640 perm/sec)   p_kst 5.635714e-03   p_cons 1.325000e-01   p_joint 4.614286e-03

Joint ci ratio: 1.307127e-01	ci left: 5.570273e-03	ci right 6.355675e-03	k: 893	n:150000
Cons ci ratio: 2.586501e-02	ci left: 1.310732e-01	ci right 1.345144e-01	k: 19918	n:150000
KS ci ratio: 1.378763e-01	ci left: 4.990313e-03	ci right 5.735669e-03	k: 803	n:150000
MYO5C   150000 perm   57 sec   (2615 perm/sec)   p_kst 5.353333e-03   p_cons 1.327867e-01   p_joint 5.953333e-03

Joint ci ratio: 1.285153e-01	ci left: 5.409569e-03	ci right 6.158510e-03	k: 924	n:160000
Cons ci ratio: 2.505316e-02	ci left: 1.310412e-01	ci right 1.343721e-01	k: 21232	n:160000
KS ci ratio: 1.329228e-01	ci left: 5.046766e-03	ci right 5.771333e-03	k: 864	n:160000
MYO5C   160000 perm   62 sec   (2589 perm/sec)   p_kst 5.400000e-03   p_cons 1.327000e-01   p_joint 5.775000e-03

Joint ci ratio: 1.445747e-01	ci left: 3.994493e-03	ci right 4.622596e-03	k: 731	n:170000
Cons ci ratio: 2.432196e-02	ci left: 1.309327e-01	ci right 1.341622e-01	k: 22532	n:170000
KS ci ratio: 1.297415e-01	ci left: 4.994520e-03	ci right 5.693101e-03	k: 907	n:170000
MYO5C   170000 perm   66 sec   (2561 perm/sec)   p_kst 5.335294e-03   p_cons 1.325412e-01   p_joint 4.300000e-03

Joint ci ratio: 1.296175e-01	ci left: 4.727755e-03	ci right 5.388341e-03	k: 909	n:180000
Cons ci ratio: 2.365069e-02	ci left: 1.308430e-01	ci right 1.339800e-01	k: 23833	n:180000
KS ci ratio: 1.260473e-01	ci left: 5.007451e-03	ci right 5.686408e-03	k: 961	n:180000
MYO5C   180000 perm   71 sec   (2535 perm/sec)   p_kst 5.338889e-03   p_cons 1.324056e-01   p_joint 5.050000e-03

Joint ci ratio: 1.282959e-01	ci left: 4.575676e-03	ci right 5.207997e-03	k: 928	n:190000
Cons ci ratio: 2.302206e-02	ci left: 1.308633e-01	ci right 1.339163e-01	k: 25153	n:190000
KS ci ratio: 1.222292e-01	ci left: 5.054992e-03	ci right 5.718131e-03	k: 1022	n:190000
MYO5C   190000 perm   76 sec   (2507 perm/sec)   p_kst 5.378947e-03   p_cons 1.323842e-01   p_joint 4.884211e-03

Joint ci ratio: 1.263454e-01	ci left: 4.487261e-03	ci right 5.097229e-03	k: 957	n:200000
Cons ci ratio: 2.245814e-02	ci left: 1.307085e-01	ci right 1.336822e-01	k: 26438	n:200000
KS ci ratio: 1.192926e-01	ci left: 5.049539e-03	ci right 5.694925e-03	k: 1073	n:200000
MYO5C   200000 perm   81 sec   (2474 perm/sec)   p_kst 5.365000e-03   p_cons 1.321900e-01   p_joint 4.785000e-03

Joint ci ratio: 1.237277e-01	ci left: 4.462709e-03	ci right 5.055850e-03	k: 998	n:210000
Cons ci ratio: 2.192416e-02	ci left: 1.306687e-01	ci right 1.335700e-01	k: 27744	n:210000
KS ci ratio: 1.166624e-01	ci left: 5.035530e-03	ci right 5.663957e-03	k: 1122	n:210000
MYO5C   210000 perm   86 sec   (2444 perm/sec)   p_kst 5.342857e-03   p_cons 1.321143e-01   p_joint 4.752381e-03

Joint ci ratio: 1.210325e-01	ci left: 4.458142e-03	ci right 5.036843e-03	k: 1043	n:220000
Cons ci ratio: 2.142655e-02	ci left: 1.306334e-01	ci right 1.334672e-01	k: 29050	n:220000
KS ci ratio: 1.137605e-01	ci left: 5.062686e-03	ci right 5.677730e-03	k: 1180	n:220000
MYO5C   220000 perm   91 sec   (2416 perm/sec)   p_kst 5.363636e-03   p_cons 1.320455e-01   p_joint 4.740909e-03

Joint ci ratio: 1.129595e-01	ci left: 4.914365e-03	ci right 5.506906e-03	k: 1197	n:230000
Cons ci ratio: 2.095657e-02	ci left: 1.306538e-01	ci right 1.334251e-01	k: 30368	n:230000
KS ci ratio: 1.117011e-01	ci left: 5.028474e-03	ci right 5.627575e-03	k: 1224	n:230000
MYO5C   230000 perm   96 sec   (2389 perm/sec)   p_kst 5.321739e-03   p_cons 1.320348e-01   p_joint 5.204348e-03

Joint ci ratio: 1.134487e-01	ci left: 4.669079e-03	ci right 5.234645e-03	k: 1187	n:240000
Cons ci ratio: 2.052742e-02	ci left: 1.305486e-01	ci right 1.332603e-01	k: 31656	n:240000
KS ci ratio: 1.097497e-01	ci left: 4.997205e-03	ci right 5.581507e-03	k: 1268	n:240000
MYO5C   240000 perm   101 sec   (2365 perm/sec)   p_kst 5.283333e-03   p_cons 1.319000e-01   p_joint 4.945833e-03

Joint ci ratio: 1.117250e-01	ci left: 4.626142e-03	ci right 5.177432e-03	k: 1224	n:250000
Cons ci ratio: 2.009585e-02	ci left: 1.307670e-01	ci right 1.334255e-01	k: 33023	n:250000
KS ci ratio: 1.072827e-01	ci left: 5.026916e-03	ci right 5.600645e-03	k: 1327	n:250000
MYO5C   250000 perm   107 sec   (2342 perm/sec)   p_kst 5.308000e-03   p_cons 1.320920e-01   p_joint 4.896000e-03

Joint ci ratio: 1.206138e-01	ci left: 3.802036e-03	ci right 4.293737e-03	k: 1051	n:260000
Cons ci ratio: 1.970229e-02	ci left: 1.308313e-01	ci right 1.334384e-01	k: 34354	n:260000
KS ci ratio: 1.051657e-01	ci left: 5.035749e-03	ci right 5.598442e-03	k: 1381	n:260000
MYO5C   260000 perm   112 sec   (2320 perm/sec)   p_kst 5.311538e-03   p_cons 1.321308e-01   p_joint 4.042308e-03

Joint ci ratio: 1.186026e-01	ci left: 3.790562e-03	ci right 4.272032e-03	k: 1087	n:270000
Cons ci ratio: 1.934097e-02	ci left: 1.307733e-01	ci right 1.333309e-01	k: 35653	n:270000
KS ci ratio: 1.033140e-01	ci left: 5.029596e-03	ci right 5.581105e-03	k: 1431	n:270000
MYO5C   270000 perm   117 sec   (2299 perm/sec)   p_kst 5.300000e-03   p_cons 1.320481e-01   p_joint 4.025926e-03

Joint ci ratio: 1.194964e-01	ci left: 3.599723e-03	ci right 4.060641e-03	k: 1071	n:280000
Cons ci ratio: 1.901068e-02	ci left: 1.305775e-01	ci right 1.330872e-01	k: 36912	n:280000
KS ci ratio: 1.018682e-01	ci left: 4.992634e-03	ci right 5.531970e-03	k: 1472	n:280000
MYO5C   280000 perm   123 sec   (2277 perm/sec)   p_kst 5.257143e-03   p_cons 1.318286e-01   p_joint 3.825000e-03

Joint ci ratio: 1.198979e-01	ci left: 3.452163e-03	ci right 3.895777e-03	k: 1064	n:290000
Cons ci ratio: 1.870013e-02	ci left: 1.303544e-01	ci right 1.328185e-01	k: 38159	n:290000
KS ci ratio: 1.004814e-01	ci left: 4.958271e-03	ci right 5.486174e-03	k: 1513	n:290000
MYO5C   290000 perm   129 sec   (2255 perm/sec)   p_kst 5.217241e-03   p_cons 1.315828e-01   p_joint 3.668966e-03

Joint ci ratio: 1.188460e-01	ci left: 3.398528e-03	ci right 3.831149e-03	k: 1083	n:300000
Cons ci ratio: 1.838659e-02	ci left: 1.303656e-01	ci right 1.327881e-01	k: 39472	n:300000
KS ci ratio: 9.873574e-02	ci left: 4.968512e-03	ci right 5.487783e-03	k: 1567	n:300000
MYO5C   300000 perm   134 sec   (2234 perm/sec)   p_kst 5.223333e-03   p_cons 1.315733e-01   p_joint 3.610000e-03

Joint ci ratio: 9.146441e-02	ci left: 5.620812e-03	ci right 6.162682e-03	k: 1825	n:310000
Cons ci ratio: 1.807912e-02	ci left: 1.304921e-01	ci right 1.328760e-01	k: 40821	n:310000
KS ci ratio: 9.668925e-02	ci left: 5.019092e-03	ci right 5.532159e-03	k: 1634	n:310000
MYO5C   310000 perm   140 sec   (2213 perm/sec)   p_kst 5.270968e-03   p_cons 1.316806e-01   p_joint 5.887097e-03

Outputting figure to mutsig2_images.part000000000111/MYO5C.11_5393_310000_0.005271_0.13168_0.0058871.png
                gene_name: MYO5C
               theta_stop: 0.097 
                    nperm: 310000 
                     p_ks: 0.0053 
        ci_ks_bounds_left: 0.0050 
       ci_ks_bounds_right: 0.0055 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.0059 
     ci_joint_bounds_left: 0.0056 
    ci_joint_bounds_right: 0.0062 

Current progress: 22 percent done.
MYO6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.264337e-02	ci left: 3.472048e-01	ci right 3.660788e-01	k: 3566	n:10000
KS ci ratio: 3.323762e-02	ci left: 5.719593e-01	ci right 5.913931e-01	k: 5817	n:10000
MYO6   10000 perm   3 sec   (3639 perm/sec)   p_kst 5.817000e-01   p_cons 3.566000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYO6.11_3994_10000_0.5817_0.3566_1.png
                gene_name: MYO6
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
MYOM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.337314e-02	ci left: 8.896462e-01	ci right 9.017222e-01	k: 8958	n:10000
KS ci ratio: 6.301137e-03	ci left: 9.716422e-01	ci right 9.778770e-01	k: 9749	n:10000
MYOM2   10000 perm   2 sec   (4428 perm/sec)   p_kst 9.749000e-01   p_cons 8.958000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYOM2.11_4542_10000_0.9749_0.8958_1.png
                gene_name: MYOM2
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
MYO5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.632250e-02	ci left: 6.800247e-01	ci right 6.982650e-01	k: 6892	n:10000
KS ci ratio: 2.058215e-02	ci left: 7.757010e-01	ci right 7.919333e-01	k: 7839	n:10000
MYO5A   10000 perm   3 sec   (3457 perm/sec)   p_kst 7.839000e-01   p_cons 6.892000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYO5A.10_5732_10000_0.7839_0.6892_1.png
                gene_name: MYO5A
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
MYOF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.887162e-02	ci left: 3.818169e-01	ci right 4.010464e-01	k: 3914	n:10000
KS ci ratio: 1.865892e-02	ci left: 8.075529e-01	ci right 8.228631e-01	k: 8153	n:10000
MYOF   10000 perm   3 sec   (3463 perm/sec)   p_kst 8.153000e-01   p_cons 3.914000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYOF.10_6402_10000_0.8153_0.3914_1.png
                gene_name: MYOF
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
MYST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.246516e-02	ci left: 5.833956e-01	ci right 6.027502e-01	k: 5931	n:10000
Cons ci ratio: 8.010399e-02	ci left: 1.854036e-01	ci right 2.009755e-01	k: 1931	n:10000
KS ci ratio: 4.124628e-02	ci left: 4.646716e-01	ci right 4.843433e-01	k: 4745	n:10000
MYST4   10000 perm   3 sec   (3317 perm/sec)   p_kst 4.745000e-01   p_cons 1.931000e-01   p_joint 5.931000e-01

Outputting figure to mutsig2_images.part000000000111/MYST4.10_6286_10000_0.4745_0.1931_0.5931.png
                gene_name: MYST4
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 29 percent done.
MYPN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.967418e-02	ci left: 7.908060e-01	ci right 8.066196e-01	k: 7988	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
MYPN   10000 perm   2 sec   (4128 perm/sec)   p_kst 1   p_cons 7.988000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYPN.9_4039_10000_1_0.7988_1.png
                gene_name: MYPN
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
NAA25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.093584e-02	ci left: 2.836945e-01	ci right 3.016265e-01	k: 2926	n:10000
Cons ci ratio: 1.516850e-01	ci left: 5.783363e-02	ci right 6.742310e-02	k: 625	n:10000
KS ci ratio: 1.602799e-02	ci left: 8.497808e-01	ci right 8.636107e-01	k: 8568	n:10000
NAA25   10000 perm   2 sec   (4239 perm/sec)   p_kst 8.568000e-01   p_cons 6.250000e-02   p_joint 2.926000e-01

Joint ci ratio: 4.792015e-02	ci left: 2.446553e-01	ci right 2.567173e-01	k: 5013	n:20000
Cons ci ratio: 1.090359e-01	ci left: 5.738108e-02	ci right 6.404735e-02	k: 1213	n:20000
KS ci ratio: 9.691181e-03	ci left: 8.867007e-01	ci right 8.953852e-01	k: 17822	n:20000
NAA25   20000 perm   5 sec   (3845 perm/sec)   p_kst 8.911000e-01   p_cons 6.065000e-02   p_joint 2.506500e-01

Joint ci ratio: 4.245792e-02	ci left: 2.165469e-01	ci right 2.259738e-01	k: 6637	n:30000
Cons ci ratio: 8.884641e-02	ci left: 5.821980e-02	ci right 6.366561e-02	k: 1827	n:30000
KS ci ratio: 8.078617e-03	ci left: 8.833633e-01	ci right 8.905616e-01	k: 26610	n:30000
NAA25   30000 perm   8 sec   (3771 perm/sec)   p_kst 8.870000e-01   p_cons 6.090000e-02   p_joint 2.212333e-01

Outputting figure to mutsig2_images.part000000000111/NAA25.9_3015_30000_0.887_0.0609_0.22123.png
                gene_name: NAA25
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 32 percent done.
MYOT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.956843e-02	ci left: 1.874712e-01	ci right 2.031067e-01	k: 1952	n:10000
Cons ci ratio: 1.227782e-01	ci left: 8.679344e-02	ci right 9.824521e-02	k: 924	n:10000
KS ci ratio: 3.418922e-02	ci left: 5.581224e-01	ci right 5.776381e-01	k: 5679	n:10000
MYOT   10000 perm   2 sec   (5554 perm/sec)   p_kst 5.679000e-01   p_cons 9.240000e-02   p_joint 1.952000e-01

Joint ci ratio: 4.640661e-02	ci left: 2.568089e-01	ci right 2.690600e-01	k: 5258	n:20000
Cons ci ratio: 8.648459e-02	ci left: 8.910730e-02	ci right 9.721143e-02	k: 1862	n:20000
KS ci ratio: 2.529951e-02	ci left: 5.385680e-01	ci right 5.524187e-01	k: 10910	n:20000
MYOT   20000 perm   4 sec   (4906 perm/sec)   p_kst 5.455000e-01   p_cons 9.310000e-02   p_joint 2.629000e-01

Outputting figure to mutsig2_images.part000000000111/MYOT.8_1533_20000_0.5455_0.0931_0.2629.png
                gene_name: MYOT
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 33 percent done.
MYO7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.805087e-02	ci left: 5.049514e-01	ci right 5.246400e-01	k: 5148	n:10000
KS ci ratio: 8.387610e-03	ci left: 9.521083e-01	ci right 9.602233e-01	k: 9563	n:10000
MYO7A   10000 perm   3 sec   (3208 perm/sec)   p_kst 9.563000e-01   p_cons 5.148000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYO7A.7_6874_10000_0.9563_0.5148_1.png
                gene_name: MYO7A
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
MYOCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.916000e-02	ci left: 3.790301e-01	ci right 3.982348e-01	k: 3886	n:10000
Cons ci ratio: 3.965928e-02	ci left: 4.842538e-01	ci right 5.039497e-01	k: 4941	n:10000
KS ci ratio: 5.451871e-02	ci left: 3.314084e-01	ci right 3.500845e-01	k: 3407	n:10000
MYOCD   10000 perm   2 sec   (4486 perm/sec)   p_kst 3.407000e-01   p_cons 4.941000e-01   p_joint 3.886000e-01

Outputting figure to mutsig2_images.part000000000111/MYOCD.7_3029_10000_0.3407_0.4941_0.3886.png
                gene_name: MYOCD
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 36 percent done.
N4BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.441001e-02	ci left: 8.744927e-01	ci right 8.872845e-01	k: 8810	n:10000
Cons ci ratio: 1.949659e-02	ci left: 7.937479e-01	ci right 8.094760e-01	k: 8017	n:10000
KS ci ratio: 2.478420e-02	ci left: 7.054353e-01	ci right 7.232397e-01	k: 7144	n:10000
N4BP2   10000 perm   3 sec   (3780 perm/sec)   p_kst 7.144000e-01   p_cons 8.017000e-01   p_joint 8.810000e-01

Outputting figure to mutsig2_images.part000000000111/N4BP2.7_5377_10000_0.7144_0.8017_0.881.png
                gene_name: N4BP2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 38 percent done.
NAA16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.301242e-02	ci left: 3.440247e-01	ci right 3.628608e-01	k: 3534	n:10000
Cons ci ratio: 1.801804e-02	ci left: 8.180184e-01	ci right 8.329915e-01	k: 8256	n:10000
KS ci ratio: 8.802117e-02	ci left: 1.581661e-01	ci right 1.728293e-01	k: 1654	n:10000
NAA16   10000 perm   2 sec   (4578 perm/sec)   p_kst 1.654000e-01   p_cons 8.256000e-01   p_joint 3.534000e-01

Outputting figure to mutsig2_images.part000000000111/NAA16.7_2708_10000_0.1654_0.8256_0.3534.png
                gene_name: NAA16
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 39 percent done.
MYO1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.847959e-02	ci left: 2.382755e-01	ci right 2.552722e-01	k: 2467	n:10000
Cons ci ratio: 5.969375e-02	ci left: 2.922170e-01	ci right 3.102989e-01	k: 3012	n:10000
KS ci ratio: 8.567447e-02	ci left: 1.656325e-01	ci right 1.805584e-01	k: 1730	n:10000
MYO1D   10000 perm   2 sec   (4651 perm/sec)   p_kst 1.730000e-01   p_cons 3.012000e-01   p_joint 2.467000e-01

Outputting figure to mutsig2_images.part000000000111/MYO1D.6_3109_10000_0.173_0.3012_0.2467.png
                gene_name: MYO1D
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 41 percent done.
MYO1H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.753445e-02	ci left: 8.258483e-01	ci right 8.405571e-01	k: 8333	n:10000
Cons ci ratio: 4.518891e-02	ci left: 4.195704e-01	ci right 4.390708e-01	k: 4293	n:10000
KS ci ratio: 1.197531e-02	ci left: 9.090537e-01	ci right 9.201034e-01	k: 9147	n:10000
MYO1H   10000 perm   2 sec   (4675 perm/sec)   p_kst 9.147000e-01   p_cons 4.293000e-01   p_joint 8.333000e-01

Outputting figure to mutsig2_images.part000000000111/MYO1H.6_3193_10000_0.9147_0.4293_0.8333.png
                gene_name: MYO1H
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 42 percent done.
MYO3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.852074e-02	ci left: 1.916074e-01	ci right 2.073681e-01	k: 1994	n:10000
Cons ci ratio: 3.460197e-02	ci left: 5.522089e-01	ci right 5.717549e-01	k: 5620	n:10000
KS ci ratio: 1.169468e-01	ci left: 9.506351e-02	ci right 1.069701e-01	k: 1009	n:10000
MYO3B   10000 perm   2 sec   (4310 perm/sec)   p_kst 1.009000e-01   p_cons 5.620000e-01   p_joint 1.994000e-01

Joint ci ratio: 6.189432e-02	ci left: 1.618546e-01	ci right 1.722424e-01	k: 3340	n:20000
Cons ci ratio: 2.392175e-02	ci left: 5.662097e-01	ci right 5.799690e-01	k: 11462	n:20000
KS ci ratio: 7.896375e-02	ci left: 1.053517e-01	ci right 1.140622e-01	k: 2193	n:20000
MYO3B   20000 perm   5 sec   (3960 perm/sec)   p_kst 1.096500e-01   p_cons 5.731000e-01   p_joint 1.670000e-01

Outputting figure to mutsig2_images.part000000000111/MYO3B.6_4292_20000_0.10965_0.5731_0.167.png
                gene_name: MYO3B
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 43 percent done.
MYOZ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.882575e-02	ci left: 6.395531e-01	ci right 6.583601e-01	k: 6490	n:10000
Cons ci ratio: 5.490924e-02	ci left: 3.282306e-01	ci right 3.468641e-01	k: 3375	n:10000
KS ci ratio: 2.807683e-02	ci left: 6.515256e-01	ci right 6.701806e-01	k: 6609	n:10000
MYOZ2   10000 perm   2 sec   (6248 perm/sec)   p_kst 6.609000e-01   p_cons 3.375000e-01   p_joint 6.490000e-01

Outputting figure to mutsig2_images.part000000000111/MYOZ2.6_815_10000_0.6609_0.3375_0.649.png
                gene_name: MYOZ2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 45 percent done.
MYRIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.264646e-02	ci left: 2.172413e-01	ci right 2.337190e-01	k: 2254	n:10000
Cons ci ratio: 1.428763e-01	ci left: 6.497832e-02	ci right 7.507390e-02	k: 699	n:10000
KS ci ratio: 2.304204e-02	ci left: 7.345175e-01	ci right 7.517407e-01	k: 7432	n:10000
MYRIP   10000 perm   2 sec   (4370 perm/sec)   p_kst 7.432000e-01   p_cons 6.990000e-02   p_joint 2.254000e-01

Joint ci ratio: 4.464763e-02	ci left: 2.719475e-01	ci right 2.844170e-01	k: 5563	n:20000
Cons ci ratio: 1.015387e-01	ci left: 6.581811e-02	ci right 7.290771e-02	k: 1386	n:20000
KS ci ratio: 1.627843e-02	ci left: 7.374380e-01	ci right 7.495911e-01	k: 14871	n:20000
MYRIP   20000 perm   5 sec   (4107 perm/sec)   p_kst 7.435500e-01   p_cons 6.930000e-02   p_joint 2.781500e-01

Joint ci ratio: 3.944522e-02	ci left: 2.427569e-01	ci right 2.525586e-01	k: 7429	n:30000
Cons ci ratio: 8.513746e-02	ci left: 6.318326e-02	ci right 6.883447e-02	k: 1979	n:30000
KS ci ratio: 1.332676e-02	ci left: 7.375456e-01	ci right 7.474741e-01	k: 22276	n:30000
MYRIP   30000 perm   8 sec   (3935 perm/sec)   p_kst 7.425333e-01   p_cons 6.596667e-02   p_joint 2.476333e-01

Outputting figure to mutsig2_images.part000000000111/MYRIP.6_2644_30000_0.74253_0.065967_0.24763.png
                gene_name: MYRIP
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 46 percent done.
N4BP2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.217922e-02	ci left: 7.489754e-01	ci right 7.658744e-01	k: 7575	n:10000
Cons ci ratio: 9.795407e-03	ci left: 9.365128e-01	ci right 9.458281e-01	k: 9413	n:10000
KS ci ratio: 3.221025e-02	ci left: 5.872089e-01	ci right 6.065346e-01	k: 5969	n:10000
N4BP2L2   10000 perm   2 sec   (4476 perm/sec)   p_kst 5.969000e-01   p_cons 9.413000e-01   p_joint 7.575000e-01

Outputting figure to mutsig2_images.part000000000111/N4BP2L2.6_3633_10000_0.5969_0.9413_0.7575.png
                gene_name: N4BP2L2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 48 percent done.
NAA15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.265710e-02	ci left: 2.724030e-01	ci right 2.901245e-01	k: 2812	n:10000
Cons ci ratio: 7.901581e-02	ci left: 1.896376e-01	ci right 2.053390e-01	k: 1974	n:10000
KS ci ratio: 6.262613e-02	ci left: 2.726011e-01	ci right 2.903264e-01	k: 2814	n:10000
NAA15   10000 perm   2 sec   (4338 perm/sec)   p_kst 2.814000e-01   p_cons 1.974000e-01   p_joint 2.812000e-01

Outputting figure to mutsig2_images.part000000000111/NAA15.6_2681_10000_0.2814_0.1974_0.2812.png
                gene_name: NAA15
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 49 percent done.
MYO18A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.779552e-02	ci left: 6.560548e-01	ci right 6.746488e-01	k: 6654	n:10000
Cons ci ratio: 4.601716e-03	ci left: 9.840410e-01	ci right 9.886693e-01	k: 9865	n:10000
KS ci ratio: 4.866711e-02	ci left: 3.838077e-01	ci right 4.030544e-01	k: 3934	n:10000
MYO18A   10000 perm   3 sec   (3441 perm/sec)   p_kst 3.934000e-01   p_cons 9.865000e-01   p_joint 6.654000e-01

Outputting figure to mutsig2_images.part000000000111/MYO18A.5_6329_10000_0.3934_0.9865_0.6654.png
                gene_name: MYO18A
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 51 percent done.
MYO1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.490358e-01	ci left: 5.985938e-02	ci right 6.959607e-02	k: 646	n:10000
Cons ci ratio: 4.583094e-02	ci left: 4.126927e-01	ci right 4.321525e-01	k: 4224	n:10000
KS ci ratio: 2.458026e-01	ci left: 2.174701e-02	ci right 2.793403e-02	k: 247	n:10000
MYO1E   10000 perm   2 sec   (4431 perm/sec)   p_kst 2.470000e-02   p_cons 4.224000e-01   p_joint 6.460000e-02

Joint ci ratio: 1.357013e-01	ci left: 3.732625e-02	ci right 4.280850e-02	k: 800	n:20000
Cons ci ratio: 3.376530e-02	ci left: 3.957429e-01	ci right 4.093854e-01	k: 8051	n:20000
KS ci ratio: 1.796557e-01	ci left: 2.115822e-02	ci right 2.538195e-02	k: 464	n:20000
MYO1E   20000 perm   5 sec   (3986 perm/sec)   p_kst 2.320000e-02   p_cons 4.025500e-01   p_joint 4.000000e-02

Joint ci ratio: 1.251497e-01	ci left: 2.968161e-02	ci right 3.367643e-02	k: 949	n:30000
Cons ci ratio: 2.769758e-02	ci left: 3.947822e-01	ci right 4.059038e-01	k: 12010	n:30000
KS ci ratio: 1.456769e-01	ci left: 2.184756e-02	ci right 2.531222e-02	k: 706	n:30000
MYO1E   30000 perm   8 sec   (3764 perm/sec)   p_kst 2.353333e-02   p_cons 4.003333e-01   p_joint 3.163333e-02

Joint ci ratio: 1.000618e-01	ci left: 3.509815e-02	ci right 3.881946e-02	k: 1477	n:40000
Cons ci ratio: 2.398136e-02	ci left: 3.956431e-01	ci right 4.052714e-01	k: 16018	n:40000
KS ci ratio: 1.234169e-01	ci left: 2.307982e-02	ci right 2.613973e-02	k: 983	n:40000
MYO1E   40000 perm   11 sec   (3693 perm/sec)   p_kst 2.457500e-02   p_cons 4.004500e-01   p_joint 3.692500e-02

Joint ci ratio: 8.926016e-02	ci left: 3.547980e-02	ci right 3.881421e-02	k: 1856	n:50000
Cons ci ratio: 2.144934e-02	ci left: 3.961610e-01	ci right 4.047706e-01	k: 20023	n:50000
KS ci ratio: 1.105260e-01	ci left: 2.318206e-02	ci right 2.591353e-02	k: 1226	n:50000
MYO1E   50000 perm   14 sec   (3638 perm/sec)   p_kst 2.452000e-02   p_cons 4.004600e-01   p_joint 3.712000e-02

Joint ci ratio: 8.299173e-02	ci left: 3.436021e-02	ci right 3.735157e-02	k: 2150	n:60000
Cons ci ratio: 1.960210e-02	ci left: 3.960101e-01	ci right 4.038662e-01	k: 23996	n:60000
KS ci ratio: 1.017999e-01	ci left: 2.288762e-02	ci right 2.535871e-02	k: 1446	n:60000
MYO1E   60000 perm   17 sec   (3581 perm/sec)   p_kst 2.410000e-02   p_cons 3.999333e-01   p_joint 3.583333e-02

Joint ci ratio: 8.252181e-02	ci left: 2.993838e-02	ci right 3.252924e-02	k: 2185	n:70000
Cons ci ratio: 1.815368e-02	ci left: 3.961540e-01	ci right 4.034258e-01	k: 27985	n:70000
KS ci ratio: 9.362991e-02	ci left: 2.328361e-02	ci right 2.558462e-02	k: 1709	n:70000
MYO1E   70000 perm   20 sec   (3528 perm/sec)   p_kst 2.441429e-02   p_cons 3.997857e-01   p_joint 3.121429e-02

Outputting figure to mutsig2_images.part000000000111/MYO1E.5_3439_70000_0.024414_0.39979_0.031214.png
                gene_name: MYO1E
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 52 percent done.
MYOZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.849757e-02	ci left: 6.447840e-01	ci right 6.635261e-01	k: 6542	n:10000
KS ci ratio: 3.255939e-02	ci left: 5.819908e-01	ci right 6.013557e-01	k: 5917	n:10000
MYOZ1   10000 perm   2 sec   (6013 perm/sec)   p_kst 5.917000e-01   p_cons 6.542000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYOZ1.5_920_10000_0.5917_0.6542_1.png
                gene_name: MYOZ1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
NAB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.241456e-02	ci left: 7.450311e-01	ci right 7.620210e-01	k: 7536	n:10000
Cons ci ratio: 2.202230e-02	ci left: 7.516055e-01	ci right 7.684428e-01	k: 7601	n:10000
KS ci ratio: 3.722167e-02	ci left: 5.159569e-01	ci right 5.356281e-01	k: 5258	n:10000
NAB2   10000 perm   2 sec   (5372 perm/sec)   p_kst 5.258000e-01   p_cons 7.601000e-01   p_joint 7.536000e-01

Outputting figure to mutsig2_images.part000000000111/NAB2.5_1606_10000_0.5258_0.7601_0.7536.png
                gene_name: NAB2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 55 percent done.
NACA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.072499e-02	ci left: 6.098000e-01	ci right 6.289304e-01	k: 6194	n:10000
Cons ci ratio: 2.466887e-02	ci left: 7.073525e-01	ci right 7.251214e-01	k: 7163	n:10000
KS ci ratio: 4.923248e-02	ci left: 3.783335e-01	ci right 3.975319e-01	k: 3879	n:10000
NACA   10000 perm   3 sec   (3610 perm/sec)   p_kst 3.879000e-01   p_cons 7.163000e-01   p_joint 6.194000e-01

Outputting figure to mutsig2_images.part000000000111/NACA.5_6269_10000_0.3879_0.7163_0.6194.png
                gene_name: NACA
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 57 percent done.
MYST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.680497e-01	ci left: 4.724933e-02	ci right 5.601420e-02	k: 515	n:10000
Cons ci ratio: 5.594406e-02	ci left: 3.199905e-01	ci right 3.385090e-01	k: 3292	n:10000
KS ci ratio: 2.079888e-01	ci left: 3.072413e-02	ci right 3.795045e-02	k: 342	n:10000
MYST2   10000 perm   2 sec   (5670 perm/sec)   p_kst 3.420000e-02   p_cons 3.292000e-01   p_joint 5.150000e-02

Joint ci ratio: 1.541997e-01	ci left: 2.888197e-02	ci right 3.375555e-02	k: 625	n:20000
Cons ci ratio: 3.972470e-02	ci left: 3.208969e-01	ci right 3.339533e-01	k: 6548	n:20000
KS ci ratio: 1.461933e-01	ci left: 3.215814e-02	ci right 3.727829e-02	k: 693	n:20000
MYST2   20000 perm   4 sec   (5045 perm/sec)   p_kst 3.465000e-02   p_cons 3.274000e-01   p_joint 3.125000e-02

Joint ci ratio: 1.113569e-01	ci left: 3.745367e-02	ci right 4.190271e-02	k: 1189	n:30000
Cons ci ratio: 3.236037e-02	ci left: 3.231191e-01	ci right 3.337808e-01	k: 9853	n:30000
KS ci ratio: 1.175657e-01	ci left: 3.362884e-02	ci right 3.786168e-02	k: 1071	n:30000
MYST2   30000 perm   6 sec   (4710 perm/sec)   p_kst 3.570000e-02   p_cons 3.284333e-01   p_joint 3.963333e-02

Joint ci ratio: 9.950387e-02	ci left: 3.548853e-02	ci right 3.922902e-02	k: 1493	n:40000
Cons ci ratio: 2.789151e-02	ci left: 3.259400e-01	ci right 3.351846e-01	k: 13222	n:40000
KS ci ratio: 1.006287e-01	ci left: 3.470784e-02	ci right 3.840983e-02	k: 1461	n:40000
MYST2   40000 perm   9 sec   (4496 perm/sec)   p_kst 3.652500e-02   p_cons 3.305500e-01   p_joint 3.732500e-02

Joint ci ratio: 9.012050e-02	ci left: 3.481451e-02	ci right 3.811959e-02	k: 1822	n:50000
Cons ci ratio: 2.489937e-02	ci left: 3.272739e-01	ci right 3.355456e-01	k: 16570	n:50000
KS ci ratio: 9.071609e-02	ci left: 3.436455e-02	ci right 3.764961e-02	k: 1799	n:50000
MYST2   50000 perm   11 sec   (4384 perm/sec)   p_kst 3.598000e-02   p_cons 3.314000e-01   p_joint 3.644000e-02

Outputting figure to mutsig2_images.part000000000111/MYST2.4_1896_50000_0.03598_0.3314_0.03644.png
                gene_name: MYST2
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 58 percent done.
N4BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.348846e-02	ci left: 2.132945e-01	ci right 2.296681e-01	k: 2214	n:10000
Cons ci ratio: 3.268081e-02	ci left: 5.801849e-01	ci right 5.995628e-01	k: 5899	n:10000
KS ci ratio: 1.120715e-01	ci left: 1.028590e-01	ci right 1.151698e-01	k: 1089	n:10000
N4BP1   10000 perm   2 sec   (4821 perm/sec)   p_kst 1.089000e-01   p_cons 5.899000e-01   p_joint 2.214000e-01

Joint ci ratio: 5.226033e-02	ci left: 2.137797e-01	ci right 2.253019e-01	k: 4390	n:20000
Cons ci ratio: 2.288160e-02	ci left: 5.878575e-01	ci right 6.015149e-01	k: 11894	n:20000
KS ci ratio: 8.009590e-02	ci left: 1.026501e-01	ci right 1.112645e-01	k: 2138	n:20000
N4BP1   20000 perm   5 sec   (4287 perm/sec)   p_kst 1.069000e-01   p_cons 5.947000e-01   p_joint 2.195000e-01

Outputting figure to mutsig2_images.part000000000111/N4BP1.4_2719_20000_0.1069_0.5947_0.2195.png
                gene_name: N4BP1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 59 percent done.
NAA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.978425e-02	ci left: 7.889804e-01	ci right 8.048463e-01	k: 7970	n:10000
KS ci ratio: 1.615181e-02	ci left: 8.478437e-01	ci right 8.617489e-01	k: 8549	n:10000
NAA11   10000 perm   2 sec   (6500 perm/sec)   p_kst 8.549000e-01   p_cons 7.970000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/NAA11.4_694_10000_0.8549_0.797_1.png
                gene_name: NAA11
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
NAALADL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.391782e-02	ci left: 7.198696e-01	ci right 7.373970e-01	k: 7287	n:10000
Cons ci ratio: 4.044451e-02	ci left: 4.744608e-01	ci right 4.941484e-01	k: 4843	n:10000
KS ci ratio: 2.750894e-02	ci left: 6.606855e-01	ci right 6.792154e-01	k: 6700	n:10000
NAALADL2   10000 perm   2 sec   (5058 perm/sec)   p_kst 6.700000e-01   p_cons 4.843000e-01   p_joint 7.287000e-01

Outputting figure to mutsig2_images.part000000000111/NAALADL2.4_2444_10000_0.67_0.4843_0.7287.png
                gene_name: NAALADL2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 62 percent done.
NAE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.616784e-02	ci left: 5.302713e-01	ci right 5.499054e-01	k: 5401	n:10000
KS ci ratio: 2.452330e-02	ci left: 7.097745e-01	ci right 7.274979e-01	k: 7187	n:10000
NAE1   10000 perm   2 sec   (5434 perm/sec)   p_kst 7.187000e-01   p_cons 5.401000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/NAE1.4_1724_10000_0.7187_0.5401_1.png
                gene_name: NAE1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
NAGLU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
Cons ci ratio: 3.958005e-02	ci left: 4.852533e-01	ci right 5.049496e-01	k: 4951	n:10000
KS ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
NAGLU   10000 perm   2 sec   (5042 perm/sec)   p_kst 5.000000e-04   p_cons 4.951000e-01   p_joint 1.450000e-02

Joint ci ratio: 5.536645e-01	ci left: 1.813056e-03	ci right 3.237752e-03	k: 49	n:20000
Cons ci ratio: 2.745996e-02	ci left: 4.976955e-01	ci right 5.116031e-01	k: 10093	n:20000
KS ci ratio: 1.181570e+00	ci left: 2.397946e-04	ci right 9.193249e-04	k: 10	n:20000
NAGLU   20000 perm   4 sec   (4467 perm/sec)   p_kst 5.000000e-04   p_cons 5.046500e-01   p_joint 2.450000e-03

Joint ci ratio: 3.353689e-01	ci left: 3.774267e-03	ci right 5.324092e-03	k: 135	n:30000
Cons ci ratio: 2.233870e-02	ci left: 5.008255e-01	ci right 5.121733e-01	k: 15195	n:30000
KS ci ratio: 8.990099e-01	ci left: 3.556356e-04	ci right 9.480936e-04	k: 18	n:30000
NAGLU   30000 perm   7 sec   (4240 perm/sec)   p_kst 6.000000e-04   p_cons 5.065000e-01   p_joint 4.500000e-03

Joint ci ratio: 2.351379e-01	ci left: 6.088702e-03	ci right 7.734107e-03	k: 275	n:40000
Cons ci ratio: 1.925635e-02	ci left: 5.039129e-01	ci right 5.137359e-01	k: 20353	n:40000
KS ci ratio: 7.541403e-01	ci left: 4.246441e-04	ci right 9.522566e-04	k: 26	n:40000
NAGLU   40000 perm   10 sec   (4055 perm/sec)   p_kst 6.500000e-04   p_cons 5.088250e-01   p_joint 6.875000e-03

Joint ci ratio: 2.551084e-01	ci left: 4.100679e-03	ci right 5.317924e-03	k: 234	n:50000
Cons ci ratio: 1.805342e-02	ci left: 4.809102e-01	ci right 4.896915e-01	k: 24265	n:50000
KS ci ratio: 7.038275e-01	ci left: 4.048529e-04	ci right 8.564274e-04	k: 30	n:50000
NAGLU   50000 perm   13 sec   (3979 perm/sec)   p_kst 6.000000e-04   p_cons 4.853000e-01   p_joint 4.680000e-03

Joint ci ratio: 2.332974e-01	ci left: 4.137076e-03	ci right 5.245005e-03	k: 280	n:60000
Cons ci ratio: 1.649373e-02	ci left: 4.808935e-01	ci right 4.889079e-01	k: 29094	n:60000
KS ci ratio: 6.119868e-01	ci left: 4.763178e-04	ci right 9.077013e-04	k: 40	n:60000
NAGLU   60000 perm   15 sec   (3906 perm/sec)   p_kst 6.666667e-04   p_cons 4.849000e-01   p_joint 4.666667e-03

Joint ci ratio: 2.363502e-01	ci left: 3.451799e-03	ci right 4.390059e-03	k: 273	n:70000
Cons ci ratio: 1.526679e-02	ci left: 4.813055e-01	ci right 4.887243e-01	k: 33951	n:70000
KS ci ratio: 5.656052e-01	ci left: 4.933809e-04	ci right 8.927588e-04	k: 47	n:70000
NAGLU   70000 perm   18 sec   (3842 perm/sec)   p_kst 6.714286e-04   p_cons 4.850143e-01   p_joint 3.900000e-03

Joint ci ratio: 2.293747e-01	ci left: 3.220383e-03	ci right 4.066242e-03	k: 290	n:80000
Cons ci ratio: 1.430948e-02	ci left: 4.805439e-01	ci right 4.874823e-01	k: 38721	n:80000
KS ci ratio: 5.236454e-01	ci left: 5.179598e-04	ci right 8.947830e-04	k: 55	n:80000
NAGLU   80000 perm   21 sec   (3792 perm/sec)   p_kst 6.875000e-04   p_cons 4.840125e-01   p_joint 3.625000e-03

Joint ci ratio: 2.248175e-01	ci left: 2.988270e-03	ci right 3.755402e-03	k: 302	n:90000
Cons ci ratio: 1.349658e-02	ci left: 4.805412e-01	ci right 4.870820e-01	k: 43543	n:90000
KS ci ratio: 5.058983e-01	ci left: 4.990756e-04	ci right 8.455385e-04	k: 59	n:90000
NAGLU   90000 perm   24 sec   (3718 perm/sec)   p_kst 6.555556e-04   p_cons 4.838111e-01   p_joint 3.355556e-03

Joint ci ratio: 2.352024e-01	ci left: 2.444333e-03	ci right 3.105032e-03	k: 276	n:100000
Cons ci ratio: 1.280070e-02	ci left: 4.808381e-01	ci right 4.870428e-01	k: 48394	n:100000
KS ci ratio: 4.787414e-01	ci left: 5.104796e-04	ci right 8.396064e-04	k: 66	n:100000
NAGLU   100000 perm   27 sec   (3667 perm/sec)   p_kst 6.600000e-04   p_cons 4.839400e-01   p_joint 2.760000e-03

Joint ci ratio: 2.335477e-01	ci left: 2.256323e-03	ci right 2.861289e-03	k: 280	n:110000
Cons ci ratio: 1.220354e-02	ci left: 4.810427e-01	ci right 4.869582e-01	k: 53240	n:110000
KS ci ratio: 4.683784e-01	ci left: 4.880874e-04	ci right 7.937877e-04	k: 69	n:110000
NAGLU   110000 perm   30 sec   (3615 perm/sec)   p_kst 6.272727e-04   p_cons 4.840000e-01   p_joint 2.545455e-03

Joint ci ratio: 1.572783e-01	ci left: 4.744837e-03	ci right 5.562691e-03	k: 617	n:120000
Cons ci ratio: 1.168947e-02	ci left: 4.809354e-01	ci right 4.865987e-01	k: 58052	n:120000
KS ci ratio: 4.555483e-01	ci left: 4.768656e-04	ci right 7.648280e-04	k: 73	n:120000
NAGLU   120000 perm   34 sec   (3563 perm/sec)   p_kst 6.083333e-04   p_cons 4.837667e-01   p_joint 5.141667e-03

Joint ci ratio: 1.787784e-01	ci left: 3.355173e-03	ci right 4.021114e-03	k: 478	n:130000
Cons ci ratio: 1.122184e-02	ci left: 4.814491e-01	ci right 4.868900e-01	k: 62942	n:130000
KS ci ratio: 4.327534e-01	ci left: 4.948429e-04	ci right 7.743691e-04	k: 81	n:130000
NAGLU   130000 perm   37 sec   (3514 perm/sec)   p_kst 6.230769e-04   p_cons 4.841692e-01   p_joint 3.676923e-03

Joint ci ratio: 1.814829e-01	ci left: 3.019978e-03	ci right 3.629451e-03	k: 464	n:140000
Cons ci ratio: 1.081468e-02	ci left: 4.815004e-01	ci right 4.867431e-01	k: 67777	n:140000
KS ci ratio: 4.250531e-01	ci left: 4.786108e-04	ci right 7.427878e-04	k: 84	n:140000
NAGLU   140000 perm   40 sec   (3463 perm/sec)   p_kst 6.000000e-04   p_cons 4.841214e-01   p_joint 3.314286e-03

Joint ci ratio: 1.621732e-01	ci left: 3.565281e-03	ci right 4.200799e-03	k: 581	n:150000
Cons ci ratio: 1.044578e-02	ci left: 4.816946e-01	ci right 4.867593e-01	k: 72634	n:150000
KS ci ratio: 4.381510e-01	ci left: 4.169884e-04	ci right 6.563412e-04	k: 79	n:150000
NAGLU   150000 perm   44 sec   (3414 perm/sec)   p_kst 5.266667e-04   p_cons 4.842267e-01   p_joint 3.873333e-03

Joint ci ratio: 1.658059e-01	ci left: 3.192561e-03	ci right 3.775659e-03	k: 556	n:160000
Cons ci ratio: 1.011868e-02	ci left: 4.815485e-01	ci right 4.864521e-01	k: 77440	n:160000
KS ci ratio: 4.354439e-01	ci left: 3.964882e-04	ci right 6.222552e-04	k: 80	n:160000
NAGLU   160000 perm   48 sec   (3365 perm/sec)   p_kst 5.000000e-04   p_cons 4.840000e-01   p_joint 3.475000e-03

Joint ci ratio: 1.726417e-01	ci left: 2.762477e-03	ci right 3.289991e-03	k: 513	n:170000
Cons ci ratio: 9.828254e-03	ci left: 4.810277e-01	ci right 4.857846e-01	k: 82179	n:170000
KS ci ratio: 4.250761e-01	ci left: 3.941461e-04	ci right 6.117153e-04	k: 84	n:170000
NAGLU   170000 perm   51 sec   (3318 perm/sec)   p_kst 4.941176e-04   p_cons 4.834059e-01   p_joint 3.017647e-03

Joint ci ratio: 1.706697e-01	ci left: 2.672798e-03	ci right 3.176756e-03	k: 525	n:180000
Cons ci ratio: 9.557096e-03	ci left: 4.807945e-01	ci right 4.854171e-01	k: 86959	n:180000
KS ci ratio: 4.177701e-01	ci left: 3.871477e-04	ci right 5.961562e-04	k: 87	n:180000
NAGLU   180000 perm   55 sec   (3268 perm/sec)   p_kst 4.833333e-04   p_cons 4.831056e-01   p_joint 2.916667e-03

Joint ci ratio: 1.831487e-01	ci left: 2.184975e-03	ci right 2.630424e-03	k: 456	n:190000
Cons ci ratio: 9.299166e-03	ci left: 4.810191e-01	ci right 4.855183e-01	k: 91821	n:190000
KS ci ratio: 4.063845e-01	ci left: 3.903593e-04	ci right 5.938087e-04	k: 92	n:190000
NAGLU   190000 perm   59 sec   (3219 perm/sec)   p_kst 4.842105e-04   p_cons 4.832684e-01   p_joint 2.400000e-03

Joint ci ratio: 1.862488e-01	ci left: 2.004176e-03	ci right 2.420462e-03	k: 441	n:200000
Cons ci ratio: 9.057603e-03	ci left: 4.814126e-01	ci right 4.857979e-01	k: 96721	n:200000
KS ci ratio: 3.958818e-01	ci left: 3.933194e-04	ci right 5.916273e-04	k: 97	n:200000
NAGLU   200000 perm   63 sec   (3175 perm/sec)   p_kst 4.850000e-04   p_cons 4.836050e-01   p_joint 2.205000e-03

Joint ci ratio: 2.006449e-01	ci left: 1.632279e-03	ci right 2.000738e-03	k: 380	n:210000
Cons ci ratio: 8.836627e-03	ci left: 4.816176e-01	ci right 4.858971e-01	k: 101589	n:210000
KS ci ratio: 3.806470e-01	ci left: 4.089681e-04	ci right 6.052486e-04	k: 105	n:210000
NAGLU   210000 perm   67 sec   (3133 perm/sec)   p_kst 5.000000e-04   p_cons 4.837571e-01   p_joint 1.809524e-03

Joint ci ratio: 1.990890e-01	ci left: 1.583989e-03	ci right 1.938436e-03	k: 386	n:220000
Cons ci ratio: 8.637279e-03	ci left: 4.814461e-01	ci right 4.856270e-01	k: 106378	n:220000
KS ci ratio: 3.771087e-01	ci left: 3.986033e-04	ci right 5.876909e-04	k: 107	n:220000
NAGLU   220000 perm   71 sec   (3093 perm/sec)   p_kst 4.863636e-04   p_cons 4.835364e-01   p_joint 1.754545e-03

Joint ci ratio: 2.108869e-01	ci left: 1.341858e-03	ci right 1.662220e-03	k: 344	n:230000
Cons ci ratio: 8.451574e-03	ci left: 4.812471e-01	ci right 4.853359e-01	k: 111157	n:230000
KS ci ratio: 3.686712e-01	ci left: 4.009749e-04	ci right 5.859062e-04	k: 112	n:230000
NAGLU   230000 perm   75 sec   (3053 perm/sec)   p_kst 4.869565e-04   p_cons 4.832913e-01   p_joint 1.495652e-03

Joint ci ratio: 2.047450e-01	ci left: 1.368897e-03	ci right 1.685004e-03	k: 365	n:240000
Cons ci ratio: 8.273967e-03	ci left: 4.812697e-01	ci right 4.852724e-01	k: 115985	n:240000
KS ci ratio: 3.623150e-01	ci left: 3.994036e-04	ci right 5.796844e-04	k: 116	n:240000
NAGLU   240000 perm   80 sec   (3013 perm/sec)   p_kst 4.833333e-04   p_cons 4.832708e-01   p_joint 1.520833e-03

Joint ci ratio: 2.022756e-01	ci left: 1.348305e-03	ci right 1.655438e-03	k: 374	n:250000
Cons ci ratio: 8.103991e-03	ci left: 4.814833e-01	ci right 4.854051e-01	k: 120861	n:250000
KS ci ratio: 3.519384e-01	ci left: 4.089163e-04	ci right 5.869978e-04	k: 123	n:250000
NAGLU   250000 perm   84 sec   (2976 perm/sec)   p_kst 4.920000e-04   p_cons 4.834440e-01   p_joint 1.496000e-03

Joint ci ratio: 1.993742e-01	ci left: 1.336626e-03	ci right 1.636201e-03	k: 385	n:260000
Cons ci ratio: 7.952707e-03	ci left: 4.811390e-01	ci right 4.849844e-01	k: 125596	n:260000
KS ci ratio: 3.463964e-01	ci left: 4.072241e-04	ci right 5.811496e-04	k: 127	n:260000
NAGLU   260000 perm   89 sec   (2932 perm/sec)   p_kst 4.884615e-04   p_cons 4.830615e-01   p_joint 1.480769e-03

Joint ci ratio: 1.978458e-01	ci left: 1.308237e-03	ci right 1.598930e-03	k: 391	n:270000
Cons ci ratio: 7.801710e-03	ci left: 4.813245e-01	ci right 4.850980e-01	k: 130467	n:270000
KS ci ratio: 3.385518e-01	ci left: 4.124533e-04	ci right 5.837513e-04	k: 133	n:270000
NAGLU   270000 perm   93 sec   (2896 perm/sec)   p_kst 4.925926e-04   p_cons 4.832111e-01   p_joint 1.448148e-03

Joint ci ratio: 2.070456e-01	ci left: 1.146228e-03	ci right 1.414266e-03	k: 357	n:280000
Cons ci ratio: 7.659820e-03	ci left: 4.814439e-01	ci right 4.851493e-01	k: 135323	n:280000
KS ci ratio: 3.336097e-01	ci left: 4.108030e-04	ci right 5.783900e-04	k: 137	n:280000
NAGLU   280000 perm   98 sec   (2860 perm/sec)   p_kst 4.892857e-04   p_cons 4.832964e-01   p_joint 1.275000e-03

Joint ci ratio: 2.047720e-01	ci left: 1.132866e-03	ci right 1.394506e-03	k: 365	n:290000
Cons ci ratio: 7.520881e-03	ci left: 4.818555e-01	ci right 4.854966e-01	k: 140266	n:290000
KS ci ratio: 3.312199e-01	ci left: 4.029581e-04	ci right 5.659160e-04	k: 139	n:290000
NAGLU   290000 perm   103 sec   (2827 perm/sec)   p_kst 4.793103e-04   p_cons 4.836759e-01   p_joint 1.258621e-03

Joint ci ratio: 2.004366e-01	ci left: 1.145732e-03	ci right 1.404057e-03	k: 381	n:300000
Cons ci ratio: 7.398508e-03	ci left: 4.816136e-01	ci right 4.851934e-01	k: 145021	n:300000
KS ci ratio: 3.265877e-01	ci left: 4.017586e-04	ci right 5.614826e-04	k: 143	n:300000
NAGLU   300000 perm   107 sec   (2792 perm/sec)   p_kst 4.766667e-04   p_cons 4.834033e-01   p_joint 1.270000e-03

Joint ci ratio: 1.978644e-01	ci left: 1.139422e-03	ci right 1.392630e-03	k: 391	n:310000
Cons ci ratio: 7.275664e-03	ci left: 4.818168e-01	ci right 4.853383e-01	k: 149909	n:310000
KS ci ratio: 3.243446e-01	ci left: 3.947230e-04	ci right 5.503476e-04	k: 145	n:310000
NAGLU   310000 perm   112 sec   (2758 perm/sec)   p_kst 4.677419e-04   p_cons 4.835774e-01   p_joint 1.261290e-03

Joint ci ratio: 1.951458e-01	ci left: 1.136499e-03	ci right 1.385174e-03	k: 402	n:320000
Cons ci ratio: 7.160936e-03	ci left: 4.818546e-01	ci right 4.853207e-01	k: 154748	n:320000
KS ci ratio: 3.221470e-01	ci left: 3.881306e-04	ci right 5.399050e-04	k: 147	n:320000
NAGLU   320000 perm   118 sec   (2722 perm/sec)   p_kst 4.593750e-04   p_cons 4.835875e-01   p_joint 1.256250e-03

Joint ci ratio: 1.923039e-01	ci left: 1.136659e-03	ci right 1.381325e-03	k: 414	n:330000
Cons ci ratio: 7.053310e-03	ci left: 4.817603e-01	ci right 4.851733e-01	k: 159544	n:330000
KS ci ratio: 3.178803e-01	ci left: 3.875167e-04	ci right 5.366358e-04	k: 151	n:330000
NAGLU   330000 perm   123 sec   (2689 perm/sec)   p_kst 4.575758e-04   p_cons 4.834667e-01   p_joint 1.254545e-03

Joint ci ratio: 1.937146e-01	ci left: 1.086431e-03	ci right 1.322202e-03	k: 408	n:340000
Cons ci ratio: 6.949166e-03	ci left: 4.817601e-01	ci right 4.851225e-01	k: 164370	n:340000
KS ci ratio: 3.137787e-01	ci left: 3.869515e-04	ci right 5.335466e-04	k: 155	n:340000
NAGLU   340000 perm   128 sec   (2656 perm/sec)   p_kst 4.558824e-04   p_cons 4.834412e-01   p_joint 1.200000e-03

Joint ci ratio: 1.932455e-01	ci left: 1.060826e-03	ci right 1.290418e-03	k: 410	n:350000
Cons ci ratio: 6.846878e-03	ci left: 4.819517e-01	ci right 4.852657e-01	k: 169263	n:350000
KS ci ratio: 3.060284e-01	ci left: 3.969761e-04	ci right 5.429308e-04	k: 163	n:350000
NAGLU   350000 perm   133 sec   (2625 perm/sec)   p_kst 4.657143e-04   p_cons 4.836086e-01   p_joint 1.171429e-03

Joint ci ratio: 1.911645e-01	ci left: 1.055156e-03	ci right 1.280775e-03	k: 419	n:360000
Cons ci ratio: 6.751418e-03	ci left: 4.819524e-01	ci right 4.852200e-01	k: 174091	n:360000
KS ci ratio: 3.032679e-01	ci left: 3.936452e-04	ci right 5.368179e-04	k: 166	n:360000
NAGLU   360000 perm   139 sec   (2593 perm/sec)   p_kst 4.611111e-04   p_cons 4.835861e-01   p_joint 1.163889e-03

Joint ci ratio: 1.893705e-01	ci left: 1.047229e-03	ci right 1.268810e-03	k: 427	n:370000
Cons ci ratio: 6.658616e-03	ci left: 4.820453e-01	ci right 4.852685e-01	k: 178953	n:370000
KS ci ratio: 2.988273e-01	ci left: 3.954992e-04	ci right 5.368403e-04	k: 171	n:370000
NAGLU   370000 perm   144 sec   (2564 perm/sec)   p_kst 4.621622e-04   p_cons 4.836568e-01   p_joint 1.154054e-03

Joint ci ratio: 1.895952e-01	ci left: 1.017162e-03	ci right 1.232666e-03	k: 426	n:380000
Cons ci ratio: 6.569643e-03	ci left: 4.821257e-01	ci right 4.853061e-01	k: 183812	n:380000
KS ci ratio: 2.979638e-01	ci left: 3.875257e-04	ci right 5.255414e-04	k: 172	n:380000
NAGLU   380000 perm   150 sec   (2535 perm/sec)   p_kst 4.526316e-04   p_cons 4.837158e-01   p_joint 1.121053e-03

Joint ci ratio: 1.889347e-01	ci left: 9.984082e-04	ci right 1.209117e-03	k: 429	n:390000
Cons ci ratio: 6.483811e-03	ci left: 4.822279e-01	ci right 4.853672e-01	k: 188681	n:390000
KS ci ratio: 2.962573e-01	ci left: 3.823350e-04	ci right 5.175755e-04	k: 174	n:390000
NAGLU   390000 perm   156 sec   (2507 perm/sec)   p_kst 4.461538e-04   p_cons 4.837974e-01   p_joint 1.100000e-03

Joint ci ratio: 1.872020e-01	ci left: 9.925061e-04	ci right 1.199830e-03	k: 437	n:400000
Cons ci ratio: 6.401865e-03	ci left: 4.822777e-01	ci right 4.853775e-01	k: 193531	n:400000
KS ci ratio: 2.921134e-01	ci left: 3.843544e-04	ci right 5.180558e-04	k: 179	n:400000
NAGLU   400000 perm   161 sec   (2479 perm/sec)   p_kst 4.475000e-04   p_cons 4.838275e-01   p_joint 1.092500e-03

Joint ci ratio: 1.855162e-01	ci left: 9.869003e-04	ci right 1.190988e-03	k: 445	n:410000
Cons ci ratio: 6.324741e-03	ci left: 4.821839e-01	ci right 4.852456e-01	k: 198323	n:410000
KS ci ratio: 2.881388e-01	ci left: 3.862877e-04	ci right 5.185003e-04	k: 184	n:410000
NAGLU   410000 perm   167 sec   (2450 perm/sec)   p_kst 4.487805e-04   p_cons 4.837146e-01   p_joint 1.085366e-03

Joint ci ratio: 1.848971e-01	ci left: 9.702135e-04	ci right 1.170106e-03	k: 448	n:420000
Cons ci ratio: 6.252663e-03	ci left: 4.819090e-01	ci right 4.849340e-01	k: 203037	n:420000
KS ci ratio: 2.858311e-01	ci left: 3.837191e-04	ci right 5.138108e-04	k: 187	n:420000
NAGLU   420000 perm   173 sec   (2421 perm/sec)   p_kst 4.452381e-04   p_cons 4.834214e-01   p_joint 1.066667e-03

Joint ci ratio: 1.907287e-01	ci left: 8.878076e-04	ci right 1.077160e-03	k: 421	n:430000
Cons ci ratio: 6.179882e-03	ci left: 4.818983e-01	ci right 4.848879e-01	k: 207859	n:430000
KS ci ratio: 2.843235e-01	ci left: 3.791139e-04	ci right 5.068447e-04	k: 189	n:430000
NAGLU   430000 perm   179 sec   (2396 perm/sec)   p_kst 4.395349e-04   p_cons 4.833930e-01   p_joint 9.790698e-04

Joint ci ratio: 1.885083e-01	ci left: 8.892786e-04	ci right 1.076484e-03	k: 431	n:440000
Cons ci ratio: 6.108445e-03	ci left: 4.819815e-01	ci right 4.849369e-01	k: 212722	n:440000
KS ci ratio: 2.821056e-01	ci left: 3.768316e-04	ci right 5.026268e-04	k: 192	n:440000
NAGLU   440000 perm   186 sec   (2369 perm/sec)   p_kst 4.363636e-04   p_cons 4.834591e-01   p_joint 9.795455e-04

Joint ci ratio: 1.859430e-01	ci left: 8.949340e-04	ci right 1.080477e-03	k: 443	n:450000
Cons ci ratio: 6.042063e-03	ci left: 4.818434e-01	ci right 4.847657e-01	k: 217487	n:450000
KS ci ratio: 2.778197e-01	ci left: 3.808550e-04	ci right 5.057241e-04	k: 198	n:450000
NAGLU   450000 perm   192 sec   (2343 perm/sec)   p_kst 4.400000e-04   p_cons 4.833044e-01   p_joint 9.844444e-04

Joint ci ratio: 1.840868e-01	ci left: 8.941379e-04	ci right 1.077458e-03	k: 452	n:460000
Cons ci ratio: 5.976810e-03	ci left: 4.817941e-01	ci right 4.846844e-01	k: 222290	n:460000
KS ci ratio: 2.737234e-01	ci left: 3.847173e-04	ci right 5.086731e-04	k: 204	n:460000
NAGLU   460000 perm   198 sec   (2318 perm/sec)   p_kst 4.434783e-04   p_cons 4.832391e-01   p_joint 9.826087e-04

Joint ci ratio: 1.618326e-01	ci left: 1.145904e-03	ci right 1.349686e-03	k: 585	n:470000
Cons ci ratio: 5.913046e-03	ci left: 4.817959e-01	ci right 4.846553e-01	k: 227116	n:470000
KS ci ratio: 2.717427e-01	ci left: 3.824783e-04	ci right 5.046687e-04	k: 207	n:470000
NAGLU   470000 perm   205 sec   (2294 perm/sec)   p_kst 4.404255e-04   p_cons 4.832255e-01   p_joint 1.244681e-03

Joint ci ratio: 1.619731e-01	ci left: 1.120031e-03	ci right 1.319401e-03	k: 584	n:480000
Cons ci ratio: 5.853380e-03	ci left: 4.816187e-01	ci right 4.844481e-01	k: 231856	n:480000
KS ci ratio: 2.691670e-01	ci left: 3.822783e-04	ci right 5.030518e-04	k: 211	n:480000
NAGLU   480000 perm   211 sec   (2271 perm/sec)   p_kst 4.395833e-04   p_cons 4.830333e-01   p_joint 1.216667e-03

Joint ci ratio: 1.618367e-01	ci left: 1.099130e-03	ci right 1.294599e-03	k: 585	n:490000
Cons ci ratio: 5.664375e-03	ci left: 4.928828e-01	ci right 4.956846e-01	k: 242199	n:490000
KS ci ratio: 2.648296e-01	ci left: 3.878065e-04	ci right 5.080249e-04	k: 218	n:490000
NAGLU   490000 perm   218 sec   (2250 perm/sec)   p_kst 4.448980e-04   p_cons 4.942837e-01   p_joint 1.193878e-03

Joint ci ratio: 1.392687e-01	ci left: 1.471807e-03	ci right 1.694032e-03	k: 790	n:500000
Cons ci ratio: 5.607554e-03	ci left: 4.928872e-01	ci right 4.956608e-01	k: 247137	n:500000
KS ci ratio: 2.601202e-01	ci left: 3.949980e-04	ci right 5.149144e-04	k: 226	n:500000
NAGLU   500000 perm   224 sec   (2229 perm/sec)   p_kst 4.520000e-04   p_cons 4.942740e-01   p_joint 1.580000e-03

Joint ci ratio: 1.373706e-01	ci left: 1.484594e-03	ci right 1.705444e-03	k: 812	n:510000
Cons ci ratio: 5.553542e-03	ci left: 4.927896e-01	ci right 4.955359e-01	k: 252023	n:510000
KS ci ratio: 2.540363e-01	ci left: 4.074324e-04	ci right 5.277727e-04	k: 237	n:510000
NAGLU   510000 perm   231 sec   (2208 perm/sec)   p_kst 4.647059e-04   p_cons 4.941627e-01   p_joint 1.592157e-03

Joint ci ratio: 1.388342e-01	ci left: 1.424478e-03	ci right 1.638830e-03	k: 795	n:520000
Cons ci ratio: 5.496365e-03	ci left: 4.931229e-01	ci right 4.958426e-01	k: 257131	n:520000
KS ci ratio: 2.508932e-01	ci left: 4.104057e-04	ci right 5.298901e-04	k: 243	n:520000
NAGLU   520000 perm   238 sec   (2186 perm/sec)   p_kst 4.673077e-04   p_cons 4.944827e-01   p_joint 1.528846e-03

Joint ci ratio: 1.378853e-01	ci left: 1.417637e-03	ci right 1.629382e-03	k: 806	n:530000
Cons ci ratio: 5.443749e-03	ci left: 4.931833e-01	ci right 4.958772e-01	k: 262101	n:530000
KS ci ratio: 2.493653e-01	ci left: 4.079677e-04	ci right 5.259068e-04	k: 246	n:530000
NAGLU   530000 perm   245 sec   (2164 perm/sec)   p_kst 4.641509e-04   p_cons 4.945302e-01   p_joint 1.520755e-03

Joint ci ratio: 1.364553e-01	ci left: 1.421786e-03	ci right 1.631769e-03	k: 823	n:540000
Cons ci ratio: 5.393394e-03	ci left: 4.931693e-01	ci right 4.958382e-01	k: 267032	n:540000
KS ci ratio: 2.454217e-01	ci left: 4.143093e-04	ci right 5.318989e-04	k: 254	n:540000
NAGLU   540000 perm   252 sec   (2142 perm/sec)   p_kst 4.703704e-04   p_cons 4.945037e-01   p_joint 1.524074e-03

Joint ci ratio: 1.343508e-01	ci left: 1.441607e-03	ci right 1.650972e-03	k: 849	n:550000
Cons ci ratio: 5.344937e-03	ci left: 4.931069e-01	ci right 4.957514e-01	k: 271936	n:550000
KS ci ratio: 2.407454e-01	ci left: 4.238512e-04	ci right 5.415147e-04	k: 264	n:550000
NAGLU   550000 perm   259 sec   (2122 perm/sec)   p_kst 4.800000e-04   p_cons 4.944291e-01   p_joint 1.543636e-03

Joint ci ratio: 1.344319e-01	ci left: 1.414137e-03	ci right 1.619646e-03	k: 848	n:560000
Cons ci ratio: 5.297080e-03	ci left: 4.931111e-01	ci right 4.957318e-01	k: 276876	n:560000
KS ci ratio: 2.393946e-01	ci left: 4.213173e-04	ci right 5.375237e-04	k: 267	n:560000
NAGLU   560000 perm   266 sec   (2102 perm/sec)   p_kst 4.767857e-04   p_cons 4.944214e-01   p_joint 1.514286e-03

Joint ci ratio: 1.367937e-01	ci left: 1.340173e-03	ci right 1.538634e-03	k: 819	n:570000
Cons ci ratio: 5.250303e-03	ci left: 4.931328e-01	ci right 4.957304e-01	k: 281826	n:570000
KS ci ratio: 2.363277e-01	ci left: 4.254747e-04	ci right 5.411045e-04	k: 274	n:570000
NAGLU   570000 perm   274 sec   (2081 perm/sec)   p_kst 4.807018e-04   p_cons 4.944316e-01   p_joint 1.436842e-03

Joint ci ratio: 1.355594e-01	ci left: 1.342048e-03	ci right 1.538848e-03	k: 834	n:580000
Cons ci ratio: 5.205766e-03	ci left: 4.930556e-01	ci right 4.956307e-01	k: 286719	n:580000
KS ci ratio: 2.346276e-01	ci left: 4.246286e-04	ci right 5.390778e-04	k: 278	n:580000
NAGLU   580000 perm   281 sec   (2061 perm/sec)   p_kst 4.793103e-04   p_cons 4.943431e-01   p_joint 1.437931e-03

Joint ci ratio: 1.220359e-01	ci left: 1.639204e-03	ci right 1.853871e-03	k: 1029	n:590000
Cons ci ratio: 5.160804e-03	ci left: 4.931302e-01	ci right 4.956834e-01	k: 291700	n:590000
KS ci ratio: 2.337917e-01	ci left: 4.206224e-04	ci right 5.335294e-04	k: 280	n:590000
NAGLU   590000 perm   289 sec   (2040 perm/sec)   p_kst 4.745763e-04   p_cons 4.944068e-01   p_joint 1.744068e-03

Joint ci ratio: 1.219784e-01	ci left: 1.613499e-03	ci right 1.824692e-03	k: 1030	n:600000
Cons ci ratio: 5.116918e-03	ci left: 4.932091e-01	ci right 4.957409e-01	k: 296685	n:600000
KS ci ratio: 2.325540e-01	ci left: 4.183199e-04	ci right 5.299289e-04	k: 283	n:600000
NAGLU   600000 perm   297 sec   (2021 perm/sec)   p_kst 4.716667e-04   p_cons 4.944750e-01   p_joint 1.716667e-03

Joint ci ratio: 1.209273e-01	ci left: 1.615660e-03	ci right 1.825183e-03	k: 1048	n:610000
Cons ci ratio: 5.074783e-03	ci left: 4.932216e-01	ci right 4.957326e-01	k: 301631	n:610000
KS ci ratio: 2.305334e-01	ci left: 4.191835e-04	ci right 5.299129e-04	k: 288	n:610000
NAGLU   610000 perm   304 sec   (2004 perm/sec)   p_kst 4.721311e-04   p_cons 4.944770e-01   p_joint 1.718033e-03

Joint ci ratio: 1.196783e-01	ci left: 1.624017e-03	ci right 1.832296e-03	k: 1070	n:620000
Cons ci ratio: 5.033135e-03	ci left: 4.932870e-01	ci right 4.957776e-01	k: 306610	n:620000
KS ci ratio: 2.281767e-01	ci left: 4.215439e-04	ci right 5.315983e-04	k: 294	n:620000
NAGLU   620000 perm   312 sec   (1987 perm/sec)   p_kst 4.741935e-04   p_cons 4.945323e-01   p_joint 1.725806e-03

Joint ci ratio: 1.186305e-01	ci left: 1.627499e-03	ci right 1.834269e-03	k: 1089	n:630000
Cons ci ratio: 4.993003e-03	ci left: 4.932996e-01	ci right 4.957703e-01	k: 311557	n:630000
KS ci ratio: 2.251438e-01	ci left: 4.268304e-04	ci right 5.365782e-04	k: 302	n:630000
NAGLU   630000 perm   320 sec   (1970 perm/sec)   p_kst 4.793651e-04   p_cons 4.945349e-01   p_joint 1.728571e-03

Joint ci ratio: 1.206445e-01	ci left: 1.547499e-03	ci right 1.747680e-03	k: 1053	n:640000
Cons ci ratio: 4.953104e-03	ci left: 4.933837e-01	ci right 4.958351e-01	k: 316550	n:640000
KS ci ratio: 2.233088e-01	ci left: 4.275349e-04	ci right 5.364447e-04	k: 307	n:640000
NAGLU   640000 perm   328 sec   (1954 perm/sec)   p_kst 4.796875e-04   p_cons 4.946094e-01   p_joint 1.645313e-03

Joint ci ratio: 1.211653e-01	ci left: 1.510262e-03	ci right 1.706530e-03	k: 1044	n:650000
Cons ci ratio: 4.915886e-03	ci left: 4.932884e-01	ci right 4.957209e-01	k: 321428	n:650000
KS ci ratio: 2.204634e-01	ci left: 4.325812e-04	ci right 5.411822e-04	k: 315	n:650000
NAGLU   650000 perm   336 sec   (1937 perm/sec)   p_kst 4.846154e-04   p_cons 4.945046e-01   p_joint 1.606154e-03

Joint ci ratio: 1.200783e-01	ci left: 1.515299e-03	ci right 1.710330e-03	k: 1063	n:660000
Cons ci ratio: 4.878784e-03	ci left: 4.932688e-01	ci right 4.956827e-01	k: 326354	n:660000
KS ci ratio: 2.177242e-01	ci left: 4.374832e-04	ci right 5.457676e-04	k: 323	n:660000
NAGLU   660000 perm   344 sec   (1920 perm/sec)   p_kst 4.893939e-04   p_cons 4.944758e-01   p_joint 1.610606e-03

Joint ci ratio: 1.218120e-01	ci left: 1.449258e-03	ci right 1.638676e-03	k: 1033	n:670000
Cons ci ratio: 4.843160e-03	ci left: 4.931827e-01	ci right 4.955785e-01	k: 331235	n:670000
KS ci ratio: 2.163926e-01	ci left: 4.365992e-04	ci right 5.439160e-04	k: 327	n:670000
NAGLU   670000 perm   352 sec   (1904 perm/sec)   p_kst 4.880597e-04   p_cons 4.943806e-01   p_joint 1.541791e-03

Joint ci ratio: 1.209380e-01	ci left: 1.449334e-03	ci right 1.637306e-03	k: 1048	n:680000
Cons ci ratio: 4.808588e-03	ci left: 4.930698e-01	ci right 4.954479e-01	k: 336096	n:680000
KS ci ratio: 2.157364e-01	ci left: 4.329605e-04	ci right 5.390175e-04	k: 329	n:680000
NAGLU   680000 perm   361 sec   (1885 perm/sec)   p_kst 4.838235e-04   p_cons 4.942588e-01   p_joint 1.541176e-03

Joint ci ratio: 1.217558e-01	ci left: 1.408654e-03	ci right 1.592674e-03	k: 1034	n:690000
Cons ci ratio: 4.773984e-03	ci left: 4.930399e-01	ci right 4.954007e-01	k: 341012	n:690000
KS ci ratio: 2.138013e-01	ci left: 4.349137e-04	ci right 5.403682e-04	k: 335	n:690000
NAGLU   690000 perm   369 sec   (1869 perm/sec)   p_kst 4.855072e-04   p_cons 4.942203e-01   p_joint 1.498551e-03

Joint ci ratio: 1.214636e-01	ci left: 1.395455e-03	ci right 1.577282e-03	k: 1039	n:700000
Cons ci ratio: 4.739751e-03	ci left: 4.930495e-01	ci right 4.953934e-01	k: 345955	n:700000
KS ci ratio: 2.119174e-01	ci left: 4.368153e-04	ci right 5.416763e-04	k: 341	n:700000
NAGLU   700000 perm   378 sec   (1853 perm/sec)   p_kst 4.871429e-04   p_cons 4.942214e-01   p_joint 1.484286e-03

Joint ci ratio: 1.205398e-01	ci left: 1.397654e-03	ci right 1.578283e-03	k: 1055	n:710000
Cons ci ratio: 4.706496e-03	ci left: 4.930321e-01	ci right 4.953594e-01	k: 350879	n:710000
KS ci ratio: 2.103850e-01	ci left: 4.373328e-04	ci right 5.414611e-04	k: 346	n:710000
NAGLU   710000 perm   386 sec   (1839 perm/sec)   p_kst 4.873239e-04   p_cons 4.941958e-01   p_joint 1.485915e-03

Joint ci ratio: 1.198048e-01	ci left: 1.395755e-03	ci right 1.574961e-03	k: 1068	n:720000
Cons ci ratio: 4.673983e-03	ci left: 4.930098e-01	ci right 4.953208e-01	k: 355799	n:720000
KS ci ratio: 2.091830e-01	ci left: 4.365224e-04	ci right 5.397879e-04	k: 350	n:720000
NAGLU   720000 perm   395 sec   (1823 perm/sec)   p_kst 4.861111e-04   p_cons 4.941653e-01   p_joint 1.483333e-03

Joint ci ratio: 1.189181e-01	ci left: 1.397899e-03	ci right 1.575958e-03	k: 1084	n:730000
Cons ci ratio: 4.640964e-03	ci left: 4.931141e-01	ci right 4.954093e-01	k: 360811	n:730000
KS ci ratio: 2.080013e-01	ci left: 4.357359e-04	ci right 5.381588e-04	k: 354	n:730000
NAGLU   730000 perm   404 sec   (1808 perm/sec)   p_kst 4.849315e-04   p_cons 4.942616e-01   p_joint 1.484932e-03

Joint ci ratio: 1.185370e-01	ci left: 1.388186e-03	ci right 1.564402e-03	k: 1091	n:740000
Cons ci ratio: 4.608822e-03	ci left: 4.931954e-01	ci right 4.954750e-01	k: 365808	n:740000
KS ci ratio: 1.916792e-01	ci left: 5.107318e-04	ci right 6.202664e-04	k: 417	n:740000
NAGLU   740000 perm   413 sec   (1792 perm/sec)   p_kst 5.635135e-04   p_cons 4.943351e-01   p_joint 1.474324e-03

Joint ci ratio: 1.178912e-01	ci left: 1.385204e-03	ci right 1.560016e-03	k: 1103	n:750000
Cons ci ratio: 4.575996e-03	ci left: 4.934212e-01	ci right 4.956855e-01	k: 370915	n:750000
KS ci ratio: 1.907688e-01	ci left: 5.090000e-04	ci right 6.175846e-04	k: 421	n:750000
NAGLU   750000 perm   422 sec   (1778 perm/sec)   p_kst 5.613333e-04   p_cons 4.945533e-01   p_joint 1.470667e-03

Joint ci ratio: 1.222978e-01	ci left: 1.267423e-03	ci right 1.433783e-03	k: 1025	n:760000
Cons ci ratio: 4.546061e-03	ci left: 4.933990e-01	ci right 4.956484e-01	k: 375838	n:760000
KS ci ratio: 1.894269e-01	ci left: 5.098217e-04	ci right 6.177284e-04	k: 427	n:760000
NAGLU   760000 perm   431 sec   (1764 perm/sec)   p_kst 5.618421e-04   p_cons 4.945237e-01   p_joint 1.348684e-03

Joint ci ratio: 1.211805e-01	ci left: 1.274887e-03	ci right 1.440589e-03	k: 1044	n:770000
Cons ci ratio: 4.515450e-03	ci left: 4.935164e-01	ci right 4.957512e-01	k: 380868	n:770000
KS ci ratio: 1.876807e-01	ci left: 5.130999e-04	ci right 6.205853e-04	k: 435	n:770000
NAGLU   770000 perm   440 sec   (1750 perm/sec)   p_kst 5.649351e-04   p_cons 4.946338e-01   p_joint 1.355844e-03

Joint ci ratio: 1.203199e-01	ci left: 1.277193e-03	ci right 1.441931e-03	k: 1059	n:780000
Cons ci ratio: 4.486278e-03	ci left: 4.935386e-01	ci right 4.957589e-01	k: 385826	n:780000
KS ci ratio: 1.857727e-01	ci left: 5.175209e-04	ci right 6.247062e-04	k: 444	n:780000
NAGLU   780000 perm   449 sec   (1738 perm/sec)   p_kst 5.692308e-04   p_cons 4.946487e-01   p_joint 1.357692e-03

Joint ci ratio: 1.194774e-01	ci left: 1.279444e-03	ci right 1.443235e-03	k: 1074	n:790000
Cons ci ratio: 4.457336e-03	ci left: 4.935969e-01	ci right 4.958032e-01	k: 390813	n:790000
KS ci ratio: 1.841247e-01	ci left: 5.206279e-04	ci right 6.273933e-04	k: 452	n:790000
NAGLU   790000 perm   458 sec   (1724 perm/sec)   p_kst 5.721519e-04   p_cons 4.947000e-01   p_joint 1.359494e-03

Joint ci ratio: 1.203788e-01	ci left: 1.244049e-03	ci right 1.404597e-03	k: 1058	n:800000
Cons ci ratio: 4.428482e-03	ci left: 4.937063e-01	ci right 4.958987e-01	k: 395842	n:800000
KS ci ratio: 1.829173e-01	ci left: 5.212755e-04	ci right 6.273950e-04	k: 458	n:800000
NAGLU   800000 perm   468 sec   (1711 perm/sec)   p_kst 5.725000e-04   p_cons 4.948025e-01   p_joint 1.322500e-03

Joint ci ratio: 1.197026e-01	ci left: 1.243060e-03	ci right 1.402515e-03	k: 1070	n:810000
Cons ci ratio: 4.401007e-03	ci left: 4.937192e-01	ci right 4.958981e-01	k: 400795	n:810000
KS ci ratio: 1.817333e-01	ci left: 5.219094e-04	ci right 6.273945e-04	k: 464	n:810000
NAGLU   810000 perm   477 sec   (1698 perm/sec)   p_kst 5.728395e-04   p_cons 4.948086e-01   p_joint 1.320988e-03

Joint ci ratio: 1.188182e-01	ci left: 1.246831e-03	ci right 1.405505e-03	k: 1086	n:820000
Cons ci ratio: 4.374731e-03	ci left: 4.936526e-01	ci right 4.958181e-01	k: 405683	n:820000
KS ci ratio: 1.796206e-01	ci left: 5.283527e-04	ci right 6.337638e-04	k: 475	n:820000
NAGLU   820000 perm   486 sec   (1686 perm/sec)   p_kst 5.792683e-04   p_cons 4.947354e-01   p_joint 1.324390e-03

Joint ci ratio: 1.179531e-01	ci left: 1.250516e-03	ci right 1.408419e-03	k: 1102	n:830000
Cons ci ratio: 4.347703e-03	ci left: 4.937274e-01	ci right 4.958798e-01	k: 410687	n:830000
KS ci ratio: 1.784991e-01	ci left: 5.288920e-04	ci right 6.336807e-04	k: 481	n:830000
NAGLU   830000 perm   496 sec   (1674 perm/sec)   p_kst 5.795181e-04   p_cons 4.948036e-01   p_joint 1.327711e-03

Joint ci ratio: 1.040114e-01	ci left: 1.600274e-03	ci right 1.777000e-03	k: 1417	n:840000
Cons ci ratio: 4.321490e-03	ci left: 4.937636e-01	ci right 4.959031e-01	k: 415660	n:840000
KS ci ratio: 1.773984e-01	ci left: 5.294204e-04	ci right 6.335975e-04	k: 487	n:840000
NAGLU   840000 perm   505 sec   (1662 perm/sec)   p_kst 5.797619e-04   p_cons 4.948333e-01   p_joint 1.686905e-03

Joint ci ratio: 1.070017e-01	ci left: 1.492099e-03	ci right 1.661915e-03	k: 1339	n:850000
Cons ci ratio: 4.296170e-03	ci left: 4.937495e-01	ci right 4.958764e-01	k: 420591	n:850000
KS ci ratio: 1.761395e-01	ci left: 5.310628e-04	ci right 6.347427e-04	k: 494	n:850000
NAGLU   850000 perm   515 sec   (1650 perm/sec)   p_kst 5.811765e-04   p_cons 4.948129e-01   p_joint 1.575294e-03

Joint ci ratio: 1.107937e-01	ci left: 1.372943e-03	ci right 1.535096e-03	k: 1249	n:860000
Cons ci ratio: 4.270643e-03	ci left: 4.938114e-01	ci right 4.959259e-01	k: 425587	n:860000
KS ci ratio: 1.750816e-01	ci left: 5.315578e-04	ci right 6.346450e-04	k: 500	n:860000
NAGLU   860000 perm   525 sec   (1637 perm/sec)   p_kst 5.813953e-04   p_cons 4.948686e-01   p_joint 1.452326e-03

Joint ci ratio: 1.105734e-01	ci left: 1.362749e-03	ci right 1.523358e-03	k: 1254	n:870000
Cons ci ratio: 4.246601e-03	ci left: 4.937500e-01	ci right 4.958523e-01	k: 430477	n:870000
KS ci ratio: 1.742145e-01	ci left: 5.309438e-04	ci right 6.333484e-04	k: 505	n:870000
NAGLU   870000 perm   535 sec   (1626 perm/sec)   p_kst 5.804598e-04   p_cons 4.948011e-01   p_joint 1.441379e-03

Joint ci ratio: 9.279273e-02	ci left: 1.929930e-03	ci right 2.118827e-03	k: 1780	n:880000
Cons ci ratio: 4.222769e-03	ci left: 4.937128e-01	ci right 4.958031e-01	k: 435387	n:880000
KS ci ratio: 1.728532e-01	ci left: 5.336065e-04	ci right 6.356365e-04	k: 513	n:880000
NAGLU   880000 perm   545 sec   (1615 perm/sec)   p_kst 5.829545e-04   p_cons 4.947580e-01   p_joint 2.022727e-03

Joint ci ratio: 9.217356e-02	ci left: 1.934588e-03	ci right 2.122609e-03	k: 1804	n:890000
Cons ci ratio: 4.199314e-03	ci left: 4.936787e-01	ci right 4.957573e-01	k: 440299	n:890000
KS ci ratio: 1.715233e-01	ci left: 5.362124e-04	ci right 6.378702e-04	k: 521	n:890000
NAGLU   890000 perm   555 sec   (1603 perm/sec)   p_kst 5.853933e-04   p_cons 4.947180e-01   p_joint 2.026966e-03

Joint ci ratio: 9.269058e-02	ci left: 1.891382e-03	ci right 2.076291e-03	k: 1784	n:900000
Cons ci ratio: 4.175587e-03	ci left: 4.937243e-01	ci right 4.957913e-01	k: 445282	n:900000
KS ci ratio: 1.703846e-01	ci left: 5.376995e-04	ci right 6.388930e-04	k: 528	n:900000
NAGLU   900000 perm   565 sec   (1592 perm/sec)   p_kst 5.866667e-04   p_cons 4.947578e-01   p_joint 1.982222e-03

Joint ci ratio: 9.227813e-02	ci left: 1.887773e-03	ci right 2.071464e-03	k: 1800	n:910000
Cons ci ratio: 4.152304e-03	ci left: 4.937634e-01	ci right 4.958190e-01	k: 450260	n:910000
KS ci ratio: 1.695851e-01	ci left: 5.370514e-04	ci right 6.376003e-04	k: 533	n:910000
NAGLU   910000 perm   575 sec   (1582 perm/sec)   p_kst 5.857143e-04   p_cons 4.947912e-01   p_joint 1.978022e-03

Joint ci ratio: 9.156866e-02	ci left: 1.896989e-03	ci right 2.080082e-03	k: 1828	n:920000
Cons ci ratio: 4.129558e-03	ci left: 4.937833e-01	ci right 4.958276e-01	k: 455221	n:920000
KS ci ratio: 1.680188e-01	ci left: 5.416244e-04	ci right 6.419980e-04	k: 543	n:920000
NAGLU   920000 perm   586 sec   (1571 perm/sec)   p_kst 5.902174e-04   p_cons 4.948054e-01   p_joint 1.986957e-03

Joint ci ratio: 9.509913e-02	ci left: 1.736911e-03	ci right 1.911377e-03	k: 1695	n:930000
Cons ci ratio: 4.107924e-03	ci left: 4.937124e-01	ci right 4.957457e-01	k: 460098	n:930000
KS ci ratio: 1.670998e-01	ci left: 5.419816e-04	ci right 6.418167e-04	k: 549	n:930000
NAGLU   930000 perm   596 sec   (1560 perm/sec)   p_kst 5.903226e-04   p_cons 4.947290e-01   p_joint 1.822581e-03

Joint ci ratio: 9.421378e-02	ci left: 1.751671e-03	ci right 1.925890e-03	k: 1727	n:940000
Cons ci ratio: 4.086356e-03	ci left: 4.936760e-01	ci right 4.956985e-01	k: 465006	n:940000
KS ci ratio: 1.658975e-01	ci left: 5.443719e-04	ci right 6.438538e-04	k: 557	n:940000
NAGLU   940000 perm   606 sec   (1550 perm/sec)   p_kst 5.925532e-04   p_cons 4.946872e-01   p_joint 1.837234e-03

Joint ci ratio: 9.396985e-02	ci left: 1.742482e-03	ci right 1.915315e-03	k: 1736	n:950000
Cons ci ratio: 4.064894e-03	ci left: 4.936688e-01	ci right 4.956807e-01	k: 469941	n:950000
KS ci ratio: 1.647207e-01	ci left: 5.467144e-04	ci right 6.458454e-04	k: 565	n:950000
NAGLU   950000 perm   617 sec   (1539 perm/sec)   p_kst 5.947368e-04   p_cons 4.946747e-01   p_joint 1.827368e-03

Joint ci ratio: 9.586936e-02	ci left: 1.655176e-03	ci right 1.822853e-03	k: 1668	n:960000
Cons ci ratio: 4.043547e-03	ci left: 4.936889e-01	ci right 4.956903e-01	k: 474902	n:960000
KS ci ratio: 1.631426e-01	ci left: 5.520078e-04	ci right 6.510457e-04	k: 576	n:960000
NAGLU   960000 perm   628 sec   (1529 perm/sec)   p_kst 6.000000e-04   p_cons 4.946896e-01   p_joint 1.737500e-03

Joint ci ratio: 9.572669e-02	ci left: 1.643143e-03	ci right 1.809340e-03	k: 1673	n:970000
Cons ci ratio: 4.022599e-03	ci left: 4.937004e-01	ci right 4.956914e-01	k: 479855	n:970000
KS ci ratio: 1.620231e-01	ci left: 5.542289e-04	ci right 6.529165e-04	k: 584	n:970000
NAGLU   970000 perm   638 sec   (1519 perm/sec)   p_kst 6.020619e-04   p_cons 4.946959e-01   p_joint 1.724742e-03

Joint ci ratio: 9.518794e-02	ci left: 1.645301e-03	ci right 1.810728e-03	k: 1692	n:980000
Cons ci ratio: 4.002309e-03	ci left: 4.936698e-01	ci right 4.956506e-01	k: 484767	n:980000
KS ci ratio: 1.610623e-01	ci left: 5.554277e-04	ci right 6.536854e-04	k: 591	n:980000
NAGLU   980000 perm   649 sec   (1510 perm/sec)   p_kst 6.030612e-04   p_cons 4.946602e-01   p_joint 1.726531e-03

Joint ci ratio: 9.532988e-02	ci left: 1.623751e-03	ci right 1.787268e-03	k: 1687	n:990000
Cons ci ratio: 3.981912e-03	ci left: 4.936914e-01	ci right 4.956622e-01	k: 489730	n:990000
KS ci ratio: 1.599847e-01	ci left: 5.575735e-04	ci right 6.554876e-04	k: 599	n:990000
NAGLU   990000 perm   660 sec   (1500 perm/sec)   p_kst 6.050505e-04   p_cons 4.946768e-01   p_joint 1.704040e-03

Joint ci ratio: 9.471443e-02	ci left: 1.628991e-03	ci right 1.791917e-03	k: 1709	n:1000000
Cons ci ratio: 3.961903e-03	ci left: 4.937026e-01	ci right 4.956634e-01	k: 494683	n:1000000
KS ci ratio: 1.590595e-01	ci left: 5.587184e-04	ci right 6.562119e-04	k: 606	n:1000000
NAGLU   1000000 perm   671 sec   (1490 perm/sec)   p_kst 6.060000e-04   p_cons 4.946830e-01   p_joint 1.709000e-03

Joint ci ratio: 9.485425e-02	ci left: 1.608028e-03	ci right 1.769109e-03	k: 1704	n:1010000
Cons ci ratio: 3.942052e-03	ci left: 4.937314e-01	ci right 4.956825e-01	k: 499654	n:1010000
KS ci ratio: 1.586681e-01	ci left: 5.560387e-04	ci right 6.528032e-04	k: 609	n:1010000
NAGLU   1010000 perm   682 sec   (1481 perm/sec)   p_kst 6.029703e-04   p_cons 4.947069e-01   p_joint 1.687129e-03

Joint ci ratio: 9.516302e-02	ci left: 1.581734e-03	ci right 1.740725e-03	k: 1693	n:1020000
Cons ci ratio: 3.923243e-03	ci left: 4.936645e-01	ci right 4.956061e-01	k: 504528	n:1020000
KS ci ratio: 1.584090e-01	ci left: 5.524702e-04	ci right 6.484417e-04	k: 611	n:1020000
NAGLU   1020000 perm   693 sec   (1471 perm/sec)   p_kst 5.990196e-04   p_cons 4.946353e-01   p_joint 1.659804e-03

Joint ci ratio: 9.471680e-02	ci left: 1.581543e-03	ci right 1.739728e-03	k: 1709	n:1030000
Cons ci ratio: 3.904086e-03	ci left: 4.936777e-01	ci right 4.956097e-01	k: 509483	n:1030000
KS ci ratio: 1.573835e-01	ci left: 5.545666e-04	ci right 6.502198e-04	k: 619	n:1030000
NAGLU   1030000 perm   705 sec   (1461 perm/sec)   p_kst 6.009709e-04   p_cons 4.946437e-01   p_joint 1.659223e-03

Joint ci ratio: 9.427679e-02	ci left: 1.581356e-03	ci right 1.738748e-03	k: 1725	n:1040000
Cons ci ratio: 3.885058e-03	ci left: 4.937098e-01	ci right 4.956325e-01	k: 514458	n:1040000
KS ci ratio: 1.566275e-01	ci left: 5.547768e-04	ci right 6.499634e-04	k: 625	n:1040000
NAGLU   1040000 perm   716 sec   (1452 perm/sec)   p_kst 6.009615e-04   p_cons 4.946712e-01   p_joint 1.658654e-03

Joint ci ratio: 9.362776e-02	ci left: 1.588616e-03	ci right 1.745582e-03	k: 1749	n:1050000
Cons ci ratio: 3.866578e-03	ci left: 4.937061e-01	ci right 4.956197e-01	k: 519396	n:1050000
KS ci ratio: 1.555133e-01	ci left: 5.577300e-04	ci right 6.526791e-04	k: 634	n:1050000
NAGLU   1050000 perm   728 sec   (1443 perm/sec)   p_kst 6.038095e-04   p_cons 4.946629e-01   p_joint 1.665714e-03

Joint ci ratio: 9.330860e-02	ci left: 1.584685e-03	ci right 1.740700e-03	k: 1761	n:1060000
Cons ci ratio: 3.847763e-03	ci left: 4.937798e-01	ci right 4.956844e-01	k: 524416	n:1060000
KS ci ratio: 1.550260e-01	ci left: 5.560953e-04	ci right 6.504418e-04	k: 638	n:1060000
NAGLU   1060000 perm   739 sec   (1434 perm/sec)   p_kst 6.018868e-04   p_cons 4.947321e-01   p_joint 1.661321e-03

Joint ci ratio: 9.273124e-02	ci left: 1.589958e-03	ci right 1.745470e-03	k: 1783	n:1070000
Cons ci ratio: 3.830316e-03	ci left: 4.937092e-01	ci right 4.956048e-01	k: 529283	n:1070000
KS ci ratio: 1.541837e-01	ci left: 5.571871e-04	ci right 6.511579e-04	k: 645	n:1070000
NAGLU   1070000 perm   751 sec   (1425 perm/sec)   p_kst 6.028037e-04   p_cons 4.946570e-01   p_joint 1.666355e-03

Joint ci ratio: 9.229254e-02	ci left: 1.590613e-03	ci right 1.745413e-03	k: 1800	n:1080000
Cons ci ratio: 3.812101e-03	ci left: 4.937714e-01	ci right 4.956582e-01	k: 534292	n:1080000
KS ci ratio: 1.534726e-01	ci left: 5.573697e-04	ci right 6.508979e-04	k: 651	n:1080000
NAGLU   1080000 perm   763 sec   (1416 perm/sec)   p_kst 6.027778e-04   p_cons 4.947148e-01   p_joint 1.666667e-03

Joint ci ratio: 9.180943e-02	ci left: 1.593050e-03	ci right 1.747232e-03	k: 1819	n:1090000
Cons ci ratio: 3.794645e-03	ci left: 4.937665e-01	ci right 4.956446e-01	k: 539229	n:1090000
KS ci ratio: 1.528876e-01	ci left: 5.566675e-04	ci right 6.496892e-04	k: 656	n:1090000
NAGLU   1090000 perm   774 sec   (1407 perm/sec)   p_kst 6.018349e-04   p_cons 4.947055e-01   p_joint 1.668807e-03

Joint ci ratio: 9.193671e-02	ci left: 1.574126e-03	ci right 1.726699e-03	k: 1814	n:1100000
Cons ci ratio: 3.776911e-03	ci left: 4.938298e-01	ci right 4.956993e-01	k: 544241	n:1100000
KS ci ratio: 1.518509e-01	ci left: 5.594769e-04	ci right 6.522764e-04	k: 665	n:1100000
NAGLU   1100000 perm   787 sec   (1398 perm/sec)   p_kst 6.045455e-04   p_cons 4.947645e-01   p_joint 1.649091e-03

Joint ci ratio: 9.160937e-02	ci left: 1.571387e-03	ci right 1.723124e-03	k: 1827	n:1110000
Cons ci ratio: 3.760114e-03	ci left: 4.938001e-01	ci right 4.956612e-01	k: 549151	n:1110000
KS ci ratio: 1.510590e-01	ci left: 5.605039e-04	ci right 6.529451e-04	k: 672	n:1110000
NAGLU   1110000 perm   799 sec   (1390 perm/sec)   p_kst 6.054054e-04   p_cons 4.947306e-01   p_joint 1.645946e-03

Joint ci ratio: 8.322760e-02	ci left: 1.894495e-03	ci right 2.059883e-03	k: 2213	n:1120000
Cons ci ratio: 3.743092e-03	ci left: 4.938308e-01	ci right 4.956835e-01	k: 554128	n:1120000
KS ci ratio: 1.502794e-01	ci left: 5.615138e-04	ci right 6.536007e-04	k: 679	n:1120000
NAGLU   1120000 perm   811 sec   (1381 perm/sec)   p_kst 6.062500e-04   p_cons 4.947571e-01   p_joint 1.975893e-03

Joint ci ratio: 8.292863e-02	ci left: 1.891595e-03	ci right 2.056107e-03	k: 2229	n:1130000
Cons ci ratio: 3.726061e-03	ci left: 4.938928e-01	ci right 4.957373e-01	k: 559141	n:1130000
KS ci ratio: 1.496208e-01	ci left: 5.616551e-04	ci right 6.533254e-04	k: 685	n:1130000
NAGLU   1130000 perm   823 sec   (1373 perm/sec)   p_kst 6.061947e-04   p_cons 4.948150e-01   p_joint 1.972566e-03

Joint ci ratio: 8.263286e-02	ci left: 1.888746e-03	ci right 2.052397e-03	k: 2245	n:1140000
Cons ci ratio: 3.709951e-03	ci left: 4.938607e-01	ci right 4.956972e-01	k: 564048	n:1140000
KS ci ratio: 1.495122e-01	ci left: 5.575726e-04	ci right 6.485046e-04	k: 686	n:1140000
NAGLU   1140000 perm   835 sec   (1365 perm/sec)   p_kst 6.017544e-04   p_cons 4.947789e-01   p_joint 1.969298e-03

Joint ci ratio: 8.374293e-02	ci left: 1.822083e-03	ci right 1.982182e-03	k: 2186	n:1150000
Cons ci ratio: 3.693694e-03	ci left: 4.938771e-01	ci right 4.957055e-01	k: 569010	n:1150000
KS ci ratio: 1.487562e-01	ci left: 5.585840e-04	ci right 6.491793e-04	k: 693	n:1150000
NAGLU   1150000 perm   848 sec   (1356 perm/sec)   p_kst 6.026087e-04   p_cons 4.947913e-01   p_joint 1.900870e-03

Joint ci ratio: 8.334367e-02	ci left: 1.824100e-03	ci right 1.983576e-03	k: 2207	n:1160000
Cons ci ratio: 3.676939e-03	ci left: 4.939897e-01	ci right 4.958103e-01	k: 574084	n:1160000
KS ci ratio: 1.479060e-01	ci left: 5.604093e-04	ci right 6.507352e-04	k: 701	n:1160000
NAGLU   1160000 perm   861 sec   (1348 perm/sec)   p_kst 6.043103e-04   p_cons 4.949000e-01   p_joint 1.902586e-03

Joint ci ratio: 7.284089e-02	ci left: 2.379269e-03	ci right 2.559960e-03	k: 2888	n:1170000
Cons ci ratio: 3.661424e-03	ci left: 4.939620e-01	ci right 4.957748e-01	k: 578996	n:1170000
KS ci ratio: 1.473822e-01	ci left: 5.597351e-04	ci right 6.496046e-04	k: 706	n:1170000
NAGLU   1170000 perm   873 sec   (1340 perm/sec)   p_kst 6.034188e-04   p_cons 4.948684e-01   p_joint 2.468376e-03

Joint ci ratio: 7.249035e-02	ci left: 2.382403e-03	ci right 2.562425e-03	k: 2916	n:1180000
Cons ci ratio: 3.645652e-03	ci left: 4.939966e-01	ci right 4.958017e-01	k: 583981	n:1180000
KS ci ratio: 1.468638e-01	ci left: 5.590728e-04	ci right 6.484927e-04	k: 711	n:1180000
NAGLU   1180000 perm   886 sec   (1332 perm/sec)   p_kst 6.025424e-04   p_cons 4.948992e-01   p_joint 2.471186e-03

Joint ci ratio: 7.212028e-02	ci left: 2.387138e-03	ci right 2.566558e-03	k: 2946	n:1190000
Cons ci ratio: 3.630637e-03	ci left: 4.939542e-01	ci right 4.957517e-01	k: 588875	n:1190000
KS ci ratio: 1.459441e-01	ci left: 5.616608e-04	ci right 6.508830e-04	k: 720	n:1190000
NAGLU   1190000 perm   898 sec   (1325 perm/sec)   p_kst 6.050420e-04   p_cons 4.948529e-01   p_joint 2.475630e-03

Joint ci ratio: 7.179209e-02	ci left: 2.389340e-03	ci right 2.568075e-03	k: 2973	n:1200000
Cons ci ratio: 3.615698e-03	ci left: 4.939275e-01	ci right 4.957175e-01	k: 593787	n:1200000
KS ci ratio: 1.453406e-01	ci left: 5.617981e-04	ci right 6.506410e-04	k: 726	n:1200000
NAGLU   1200000 perm   911 sec   (1317 perm/sec)   p_kst 6.050000e-04   p_cons 4.948225e-01   p_joint 2.477500e-03

Joint ci ratio: 7.145640e-02	ci left: 2.392320e-03	ci right 2.570406e-03	k: 3001	n:1210000
Cons ci ratio: 3.601043e-03	ci left: 4.938873e-01	ci right 4.956698e-01	k: 598682	n:1210000
KS ci ratio: 1.445474e-01	ci left: 5.635270e-04	ci right 6.521150e-04	k: 734	n:1210000
NAGLU   1210000 perm   924 sec   (1310 perm/sec)   p_kst 6.066116e-04   p_cons 4.947785e-01   p_joint 2.480165e-03

Joint ci ratio: 7.163677e-02	ci left: 2.360634e-03	ci right 2.536823e-03	k: 2986	n:1220000
Cons ci ratio: 3.586089e-03	ci left: 4.939141e-01	ci right 4.956892e-01	k: 603658	n:1220000
KS ci ratio: 1.441558e-01	ci left: 5.620681e-04	ci right 6.501668e-04	k: 738	n:1220000
NAGLU   1220000 perm   937 sec   (1303 perm/sec)   p_kst 6.049180e-04   p_cons 4.948016e-01   p_joint 2.447541e-03

Joint ci ratio: 7.133883e-02	ci left: 2.361404e-03	ci right 2.536887e-03	k: 3011	n:1230000
Cons ci ratio: 3.571388e-03	ci left: 4.939307e-01	ci right 4.956986e-01	k: 608622	n:1230000
KS ci ratio: 1.437674e-01	ci left: 5.606333e-04	ci right 6.482500e-04	k: 742	n:1230000
NAGLU   1230000 perm   950 sec   (1295 perm/sec)   p_kst 6.032520e-04   p_cons 4.948146e-01   p_joint 2.447967e-03

Joint ci ratio: 7.111505e-02	ci left: 2.357410e-03	ci right 2.532024e-03	k: 3030	n:1240000
Cons ci ratio: 3.557028e-03	ci left: 4.939244e-01	ci right 4.956853e-01	k: 613558	n:1240000
KS ci ratio: 1.428093e-01	ci left: 5.638876e-04	ci right 6.513756e-04	k: 752	n:1240000
NAGLU   1240000 perm   963 sec   (1287 perm/sec)   p_kst 6.064516e-04   p_cons 4.948048e-01   p_joint 2.443548e-03

Joint ci ratio: 7.082355e-02	ci left: 2.358196e-03	ci right 2.532123e-03	k: 3055	n:1250000
Cons ci ratio: 3.542613e-03	ci left: 4.939503e-01	ci right 4.957041e-01	k: 618534	n:1250000
KS ci ratio: 1.422437e-01	ci left: 5.640053e-04	ci right 6.511356e-04	k: 758	n:1250000
NAGLU   1250000 perm   977 sec   (1280 perm/sec)   p_kst 6.064000e-04   p_cons 4.948272e-01   p_joint 2.444000e-03

Joint ci ratio: 7.068526e-02	ci left: 2.348835e-03	ci right 2.521719e-03	k: 3067	n:1260000
Cons ci ratio: 3.528383e-03	ci left: 4.939742e-01	ci right 4.957210e-01	k: 623508	n:1260000
KS ci ratio: 1.416848e-01	ci left: 5.641219e-04	ci right 6.508988e-04	k: 764	n:1260000
NAGLU   1260000 perm   990 sec   (1273 perm/sec)   p_kst 6.063492e-04   p_cons 4.948476e-01   p_joint 2.434127e-03

Joint ci ratio: 7.049044e-02	ci left: 2.343489e-03	ci right 2.515485e-03	k: 3084	n:1270000
Cons ci ratio: 3.514605e-03	ci left: 4.939576e-01	ci right 4.956975e-01	k: 628431	n:1270000
KS ci ratio: 1.413160e-01	ci left: 5.627180e-04	ci right 6.490347e-04	k: 768	n:1270000
NAGLU   1270000 perm   1003 sec   (1266 perm/sec)   p_kst 6.047244e-04   p_cons 4.948276e-01   p_joint 2.428346e-03

Joint ci ratio: 7.016131e-02	ci left: 2.347439e-03	ci right 2.518888e-03	k: 3113	n:1280000
Cons ci ratio: 3.500911e-03	ci left: 4.939522e-01	ci right 4.956853e-01	k: 633368	n:1280000
KS ci ratio: 1.404058e-01	ci left: 5.658590e-04	ci right 6.520517e-04	k: 778	n:1280000
NAGLU   1280000 perm   1017 sec   (1258 perm/sec)   p_kst 6.078125e-04   p_cons 4.948187e-01   p_joint 2.432031e-03

Joint ci ratio: 7.006055e-02	ci left: 2.336096e-03	ci right 2.506461e-03	k: 3122	n:1290000
Cons ci ratio: 3.487257e-03	ci left: 4.939640e-01	ci right 4.956903e-01	k: 638327	n:1290000
KS ci ratio: 1.398682e-01	ci left: 5.659606e-04	ci right 6.518111e-04	k: 784	n:1290000
NAGLU   1290000 perm   1031 sec   (1251 perm/sec)   p_kst 6.077519e-04   p_cons 4.948271e-01   p_joint 2.420155e-03

Joint ci ratio: 7.444210e-02	ci left: 2.049211e-03	ci right 2.208405e-03	k: 2766	n:1300000
Cons ci ratio: 3.473857e-03	ci left: 4.939617e-01	ci right 4.956814e-01	k: 643268	n:1300000
KS ci ratio: 1.392486e-01	ci left: 5.668037e-04	ci right 6.523697e-04	k: 791	n:1300000
NAGLU   1300000 perm   1045 sec   (1244 perm/sec)   p_kst 6.084615e-04   p_cons 4.948215e-01   p_joint 2.127692e-03

Joint ci ratio: 7.445619e-02	ci left: 2.032818e-03	ci right 2.190770e-03	k: 2765	n:1310000
Cons ci ratio: 3.460511e-03	ci left: 4.939740e-01	ci right 4.956871e-01	k: 648228	n:1310000
KS ci ratio: 1.388984e-01	ci left: 5.654241e-04	ci right 6.505494e-04	k: 795	n:1310000
NAGLU   1310000 perm   1058 sec   (1238 perm/sec)   p_kst 6.068702e-04   p_cons 4.948305e-01   p_joint 2.110687e-03

Joint ci ratio: 7.416182e-02	ci left: 2.033775e-03	ci right 2.191150e-03	k: 2787	n:1320000
Cons ci ratio: 3.447338e-03	ci left: 4.939831e-01	ci right 4.956897e-01	k: 653184	n:1320000
KS ci ratio: 1.382056e-01	ci left: 5.669912e-04	ci right 6.518915e-04	k: 803	n:1320000
NAGLU   1320000 perm   1072 sec   (1231 perm/sec)   p_kst 6.083333e-04   p_cons 4.948364e-01   p_joint 2.111364e-03

Joint ci ratio: 7.391046e-02	ci left: 2.032505e-03	ci right 2.189225e-03	k: 2806	n:1330000
Cons ci ratio: 3.434051e-03	ci left: 4.940304e-01	ci right 4.957305e-01	k: 658191	n:1330000
KS ci ratio: 1.380342e-01	ci left: 5.641798e-04	ci right 6.485459e-04	k: 805	n:1330000
NAGLU   1330000 perm   1086 sec   (1225 perm/sec)   p_kst 6.052632e-04   p_cons 4.948805e-01   p_joint 2.109774e-03

Joint ci ratio: 7.358340e-02	ci left: 2.035650e-03	ci right 2.191888e-03	k: 2831	n:1340000
Cons ci ratio: 3.421355e-03	ci left: 4.940128e-01	ci right 4.957066e-01	k: 663112	n:1340000
KS ci ratio: 1.378635e-01	ci left: 5.614105e-04	ci right 6.452500e-04	k: 807	n:1340000
NAGLU   1340000 perm   1099 sec   (1219 perm/sec)   p_kst 6.022388e-04   p_cons 4.948597e-01   p_joint 2.112687e-03

Joint ci ratio: 7.441810e-02	ci left: 1.974765e-03	ci right 2.128124e-03	k: 2768	n:1350000
Cons ci ratio: 3.408597e-03	ci left: 4.940251e-01	ci right 4.957127e-01	k: 668073	n:1350000
KS ci ratio: 1.376084e-01	ci left: 5.593975e-04	ci right 6.427692e-04	k: 810	n:1350000
NAGLU   1350000 perm   1114 sec   (1212 perm/sec)   p_kst 6.000000e-04   p_cons 4.948689e-01   p_joint 2.050370e-03

Joint ci ratio: 7.468943e-02	ci left: 1.945812e-03	ci right 2.097498e-03	k: 2748	n:1360000
Cons ci ratio: 3.395931e-03	ci left: 4.940447e-01	ci right 4.957260e-01	k: 673044	n:1360000
KS ci ratio: 1.372704e-01	ci left: 5.581243e-04	ci right 6.410853e-04	k: 814	n:1360000
NAGLU   1360000 perm   1128 sec   (1206 perm/sec)   p_kst 5.985294e-04   p_cons 4.948853e-01   p_joint 2.020588e-03

Joint ci ratio: 7.447314e-02	ci left: 1.943070e-03	ci right 2.094084e-03	k: 2764	n:1370000
Cons ci ratio: 3.383924e-03	ci left: 4.939873e-01	ci right 4.956624e-01	k: 677910	n:1370000
KS ci ratio: 1.369349e-01	ci left: 5.568699e-04	ci right 6.394256e-04	k: 818	n:1370000
NAGLU   1370000 perm   1142 sec   (1200 perm/sec)   p_kst 5.970803e-04   p_cons 4.948248e-01   p_joint 2.017518e-03

Joint ci ratio: 7.415191e-02	ci left: 1.946058e-03	ci right 2.096624e-03	k: 2788	n:1380000
Cons ci ratio: 3.371706e-03	ci left: 4.939807e-01	ci right 4.956498e-01	k: 682845	n:1380000
KS ci ratio: 1.362709e-01	ci left: 5.584337e-04	ci right 6.407872e-04	k: 826	n:1380000
NAGLU   1380000 perm   1156 sec   (1194 perm/sec)   p_kst 5.985507e-04   p_cons 4.948152e-01   p_joint 2.020290e-03

Joint ci ratio: 7.775512e-02	ci left: 1.754197e-03	ci right 1.896812e-03	k: 2536	n:1390000
Cons ci ratio: 3.359667e-03	ci left: 4.939670e-01	ci right 4.956301e-01	k: 687770	n:1390000
KS ci ratio: 1.356164e-01	ci left: 5.599758e-04	ci right 6.421282e-04	k: 834	n:1390000
NAGLU   1390000 perm   1171 sec   (1187 perm/sec)   p_kst 6.000000e-04   p_cons 4.947986e-01   p_joint 1.824460e-03

Joint ci ratio: 7.798693e-02	ci left: 1.731161e-03	ci right 1.872342e-03	k: 2521	n:1400000
Cons ci ratio: 3.347360e-03	ci left: 4.940129e-01	ci right 4.956700e-01	k: 692778	n:1400000
KS ci ratio: 1.352122e-01	ci left: 5.594264e-04	ci right 6.412339e-04	k: 839	n:1400000
NAGLU   1400000 perm   1185 sec   (1181 perm/sec)   p_kst 5.992857e-04   p_cons 4.948414e-01   p_joint 1.800714e-03

Joint ci ratio: 7.783300e-02	ci left: 1.725837e-03	ci right 1.866293e-03	k: 2531	n:1410000
Cons ci ratio: 3.335546e-03	ci left: 4.940042e-01	ci right 4.956554e-01	k: 697710	n:1410000
KS ci ratio: 1.348915e-01	ci left: 5.581999e-04	ci right 6.396188e-04	k: 843	n:1410000
NAGLU   1410000 perm   1199 sec   (1176 perm/sec)   p_kst 5.978723e-04   p_cons 4.948298e-01   p_joint 1.795035e-03

Joint ci ratio: 7.740591e-02	ci left: 1.733019e-03	ci right 1.873251e-03	k: 2559	n:1420000
Cons ci ratio: 3.323412e-03	ci left: 4.940625e-01	ci right 4.957079e-01	k: 702737	n:1420000
KS ci ratio: 1.342566e-01	ci left: 5.597131e-04	ci right 6.409378e-04	k: 851	n:1420000
NAGLU   1420000 perm   1214 sec   (1169 perm/sec)   p_kst 5.992958e-04   p_cons 4.948852e-01   p_joint 1.802113e-03

Joint ci ratio: 7.912806e-02	ci left: 1.645479e-03	ci right 1.781726e-03	k: 2449	n:1430000
Cons ci ratio: 3.311618e-03	ci left: 4.940886e-01	ci right 4.957282e-01	k: 707719	n:1430000
KS ci ratio: 1.338645e-01	ci left: 5.591782e-04	ci right 6.400694e-04	k: 856	n:1430000
NAGLU   1430000 perm   1230 sec   (1163 perm/sec)   p_kst 5.986014e-04   p_cons 4.949084e-01   p_joint 1.712587e-03

Joint ci ratio: 7.908005e-02	ci left: 1.636094e-03	ci right 1.771478e-03	k: 2452	n:1440000
Cons ci ratio: 3.299921e-03	ci left: 4.941185e-01	ci right 4.957524e-01	k: 712707	n:1440000
KS ci ratio: 1.334757e-01	ci left: 5.586511e-04	ci right 6.392128e-04	k: 861	n:1440000
NAGLU   1440000 perm   1245 sec   (1157 perm/sec)   p_kst 5.979167e-04   p_cons 4.949354e-01   p_joint 1.702778e-03

Joint ci ratio: 7.875954e-02	ci left: 1.638332e-03	ci right 1.773326e-03	k: 2472	n:1450000
Cons ci ratio: 3.288216e-03	ci left: 4.941679e-01	ci right 4.957962e-01	k: 717724	n:1450000
KS ci ratio: 1.330903e-01	ci left: 5.581316e-04	ci right 6.383676e-04	k: 866	n:1450000
NAGLU   1450000 perm   1260 sec   (1151 perm/sec)   p_kst 5.972414e-04   p_cons 4.949821e-01   p_joint 1.704828e-03

Joint ci ratio: 7.845867e-02	ci left: 1.639868e-03	ci right 1.774450e-03	k: 2491	n:1460000
Cons ci ratio: 3.277195e-03	ci left: 4.941311e-01	ci right 4.957538e-01	k: 722616	n:1460000
KS ci ratio: 1.324804e-01	ci left: 5.596063e-04	ci right 6.396566e-04	k: 874	n:1460000
NAGLU   1460000 perm   1275 sec   (1145 perm/sec)   p_kst 5.986301e-04   p_cons 4.949425e-01   p_joint 1.706164e-03

Joint ci ratio: 7.816122e-02	ci left: 1.641385e-03	ci right 1.775557e-03	k: 2510	n:1470000
Cons ci ratio: 3.265973e-03	ci left: 4.941425e-01	ci right 4.957596e-01	k: 727578	n:1470000
KS ci ratio: 1.317296e-01	ci left: 5.623774e-04	ci right 6.423325e-04	k: 884	n:1470000
NAGLU   1470000 perm   1290 sec   (1139 perm/sec)   p_kst 6.013605e-04   p_cons 4.949510e-01   p_joint 1.707483e-03

Joint ci ratio: 7.788254e-02	ci left: 1.642219e-03	ci right 1.775959e-03	k: 2528	n:1480000
Cons ci ratio: 3.255020e-03	ci left: 4.941300e-01	ci right 4.957417e-01	k: 732505	n:1480000
KS ci ratio: 1.313591e-01	ci left: 5.618447e-04	ci right 6.414819e-04	k: 889	n:1480000
NAGLU   1480000 perm   1306 sec   (1134 perm/sec)   p_kst 6.006757e-04   p_cons 4.949358e-01   p_joint 1.708108e-03

Joint ci ratio: 7.911462e-02	ci left: 1.579874e-03	ci right 1.710666e-03	k: 2450	n:1490000
Cons ci ratio: 3.244193e-03	ci left: 4.941150e-01	ci right 4.957213e-01	k: 737428	n:1490000
KS ci ratio: 1.309917e-01	ci left: 5.613196e-04	ci right 6.406425e-04	k: 894	n:1490000
NAGLU   1490000 perm   1321 sec   (1128 perm/sec)   p_kst 6.000000e-04   p_cons 4.949181e-01   p_joint 1.644295e-03

Joint ci ratio: 7.895389e-02	ci left: 1.575876e-03	ci right 1.706060e-03	k: 2460	n:1500000
Cons ci ratio: 3.233008e-03	ci left: 4.941722e-01	ci right 4.957731e-01	k: 742459	n:1500000
KS ci ratio: 1.307729e-01	ci left: 5.595119e-04	ci right 6.384370e-04	k: 897	n:1500000
NAGLU   1500000 perm   1336 sec   (1122 perm/sec)   p_kst 5.980000e-04   p_cons 4.949727e-01   p_joint 1.640000e-03

Joint ci ratio: 8.116448e-02	ci left: 1.479770e-03	ci right 1.605598e-03	k: 2328	n:1510000
Cons ci ratio: 3.222352e-03	ci left: 4.941645e-01	ci right 4.957600e-01	k: 747393	n:1510000
KS ci ratio: 1.300506e-01	ci left: 5.622130e-04	ci right 6.410473e-04	k: 907	n:1510000
NAGLU   1510000 perm   1352 sec   (1117 perm/sec)   p_kst 6.006623e-04   p_cons 4.949623e-01   p_joint 1.541722e-03

Joint ci ratio: 8.090437e-02	ci left: 1.479703e-03	ci right 1.605103e-03	k: 2343	n:1520000
Cons ci ratio: 3.211619e-03	ci left: 4.941851e-01	ci right 4.957754e-01	k: 752370	n:1520000
KS ci ratio: 1.296941e-01	ci left: 5.616969e-04	ci right 6.402262e-04	k: 912	n:1520000
NAGLU   1520000 perm   1368 sec   (1111 perm/sec)   p_kst 6.000000e-04   p_cons 4.949803e-01   p_joint 1.541447e-03

Joint ci ratio: 8.068102e-02	ci left: 1.478357e-03	ci right 1.603281e-03	k: 2356	n:1530000
Cons ci ratio: 3.201190e-03	ci left: 4.941748e-01	ci right 4.957599e-01	k: 757300	n:1530000
KS ci ratio: 1.294816e-01	ci left: 5.599228e-04	ci right 6.380661e-04	k: 915	n:1530000
NAGLU   1530000 perm   1383 sec   (1106 perm/sec)   p_kst 5.980392e-04   p_cons 4.949673e-01   p_joint 1.539869e-03

Joint ci ratio: 8.040854e-02	ci left: 1.478937e-03	ci right 1.603469e-03	k: 2372	n:1540000
Cons ci ratio: 3.190749e-03	ci left: 4.941821e-01	ci right 4.957621e-01	k: 762257	n:1540000
KS ci ratio: 1.289897e-01	ci left: 5.606855e-04	ci right 6.386151e-04	k: 922	n:1540000
NAGLU   1540000 perm   1399 sec   (1101 perm/sec)   p_kst 5.987013e-04   p_cons 4.949721e-01   p_joint 1.540260e-03

Joint ci ratio: 8.015562e-02	ci left: 1.478879e-03	ci right 1.602996e-03	k: 2387	n:1550000
Cons ci ratio: 3.180250e-03	ci left: 4.942145e-01	ci right 4.957894e-01	k: 767253	n:1550000
KS ci ratio: 1.284342e-01	ci left: 5.620633e-04	ci right 6.398224e-04	k: 930	n:1550000
NAGLU   1550000 perm   1415 sec   (1096 perm/sec)   p_kst 6.000000e-04   p_cons 4.950019e-01   p_joint 1.540000e-03

Joint ci ratio: 7.972252e-02	ci left: 1.485733e-03	ci right 1.609719e-03	k: 2413	n:1560000
Cons ci ratio: 3.169906e-03	ci left: 4.942382e-01	ci right 4.958080e-01	k: 772236	n:1560000
KS ci ratio: 1.278858e-01	ci left: 5.634241e-04	ci right 6.410134e-04	k: 938	n:1560000
NAGLU   1560000 perm   1431 sec   (1090 perm/sec)   p_kst 6.012821e-04   p_cons 4.950231e-01   p_joint 1.546795e-03

Joint ci ratio: 7.950878e-02	ci left: 1.484385e-03	ci right 1.607912e-03	k: 2426	n:1570000
Cons ci ratio: 3.159574e-03	ci left: 4.942756e-01	ci right 4.958404e-01	k: 777241	n:1570000
KS ci ratio: 1.278861e-01	ci left: 5.598354e-04	ci right 6.369306e-04	k: 938	n:1570000
NAGLU   1570000 perm   1447 sec   (1085 perm/sec)   p_kst 5.974522e-04   p_cons 4.950580e-01   p_joint 1.545223e-03

Joint ci ratio: 7.931303e-02	ci left: 1.482434e-03	ci right 1.605481e-03	k: 2438	n:1580000
Cons ci ratio: 3.149434e-03	ci left: 4.942979e-01	ci right 4.958578e-01	k: 782223	n:1580000
KS ci ratio: 1.275470e-01	ci left: 5.593556e-04	ci right 6.361651e-04	k: 943	n:1580000
NAGLU   1580000 perm   1463 sec   (1080 perm/sec)   p_kst 5.968354e-04   p_cons 4.950778e-01   p_joint 1.543038e-03

Joint ci ratio: 7.911873e-02	ci left: 1.480508e-03	ci right 1.603080e-03	k: 2450	n:1590000
Cons ci ratio: 3.139605e-03	ci left: 4.942861e-01	ci right 4.958410e-01	k: 787151	n:1590000
KS ci ratio: 1.273449e-01	ci left: 5.576642e-04	ci right 6.341110e-04	k: 946	n:1590000
NAGLU   1590000 perm   1479 sec   (1075 perm/sec)   p_kst 5.949686e-04   p_cons 4.950635e-01   p_joint 1.540881e-03

Joint ci ratio: 8.030926e-02	ci left: 1.427150e-03	ci right 1.547166e-03	k: 2378	n:1600000
Cons ci ratio: 3.129851e-03	ci left: 4.942769e-01	ci right 4.958269e-01	k: 792083	n:1600000
KS ci ratio: 1.270101e-01	ci left: 5.572044e-04	ci right 6.333722e-04	k: 951	n:1600000
NAGLU   1600000 perm   1495 sec   (1070 perm/sec)   p_kst 5.943750e-04   p_cons 4.950519e-01   p_joint 1.486250e-03

Joint ci ratio: 8.002379e-02	ci left: 1.428633e-03	ci right 1.548327e-03	k: 2395	n:1610000
Cons ci ratio: 3.119893e-03	ci left: 4.943150e-01	ci right 4.958602e-01	k: 797091	n:1610000
KS ci ratio: 1.267442e-01	ci left: 5.561491e-04	ci right 6.320015e-04	k: 955	n:1610000
NAGLU   1610000 perm   1512 sec   (1065 perm/sec)   p_kst 5.931677e-04   p_cons 4.950876e-01   p_joint 1.487578e-03

Joint ci ratio: 7.967524e-02	ci left: 1.432519e-03	ci right 1.551991e-03	k: 2416	n:1620000
Cons ci ratio: 3.110164e-03	ci left: 4.943310e-01	ci right 4.958715e-01	k: 802064	n:1620000
KS ci ratio: 1.262826e-01	ci left: 5.569003e-04	ci right 6.325579e-04	k: 962	n:1620000
NAGLU   1620000 perm   1528 sec   (1060 perm/sec)   p_kst 5.938272e-04   p_cons 4.951012e-01   p_joint 1.491358e-03

Joint ci ratio: 7.944551e-02	ci left: 1.432148e-03	ci right 1.551229e-03	k: 2430	n:1630000
Cons ci ratio: 3.100594e-03	ci left: 4.943358e-01	ci right 4.958715e-01	k: 807019	n:1630000
KS ci ratio: 1.255673e-01	ci left: 5.600197e-04	ci right 6.356380e-04	k: 973	n:1630000
NAGLU   1630000 perm   1545 sec   (1055 perm/sec)   p_kst 5.969325e-04   p_cons 4.951037e-01   p_joint 1.490798e-03

Joint ci ratio: 7.918533e-02	ci left: 1.432978e-03	ci right 1.551720e-03	k: 2446	n:1640000
Cons ci ratio: 3.091579e-03	ci left: 4.942650e-01	ci right 4.957960e-01	k: 811850	n:1640000
KS ci ratio: 1.250547e-01	ci left: 5.613301e-04	ci right 6.367930e-04	k: 981	n:1640000
NAGLU   1640000 perm   1561 sec   (1050 perm/sec)   p_kst 5.981707e-04   p_cons 4.950305e-01   p_joint 1.491463e-03

Joint ci ratio: 8.012577e-02	ci left: 1.390435e-03	ci right 1.507084e-03	k: 2389	n:1650000
Cons ci ratio: 3.082455e-03	ci left: 4.942253e-01	ci right 4.957517e-01	k: 816731	n:1650000
KS ci ratio: 1.248009e-01	ci left: 5.602766e-04	ci right 6.354337e-04	k: 985	n:1650000
NAGLU   1650000 perm   1578 sec   (1046 perm/sec)   p_kst 5.969697e-04   p_cons 4.949885e-01   p_joint 1.447879e-03

Joint ci ratio: 8.122255e-02	ci left: 1.344281e-03	ci right 1.458674e-03	k: 2325	n:1660000
Cons ci ratio: 3.073201e-03	ci left: 4.942205e-01	ci right 4.957422e-01	k: 821669	n:1660000
KS ci ratio: 1.245486e-01	ci left: 5.592359e-04	ci right 6.340905e-04	k: 989	n:1660000
NAGLU   1660000 perm   1595 sec   (1041 perm/sec)   p_kst 5.957831e-04   p_cons 4.949813e-01   p_joint 1.400602e-03

Joint ci ratio: 8.090999e-02	ci left: 1.346792e-03	ci right 1.460937e-03	k: 2343	n:1670000
Cons ci ratio: 3.063721e-03	ci left: 4.942660e-01	ci right 4.957832e-01	k: 826691	n:1670000
KS ci ratio: 1.241105e-01	ci left: 5.599484e-04	ci right 6.346155e-04	k: 996	n:1670000
NAGLU   1670000 perm   1611 sec   (1036 perm/sec)   p_kst 5.964072e-04   p_cons 4.950246e-01   p_joint 1.402994e-03

Joint ci ratio: 8.189587e-02	ci left: 1.306119e-03	ci right 1.418230e-03	k: 2287	n:1680000
Cons ci ratio: 3.054506e-03	ci left: 4.942818e-01	ci right 4.957944e-01	k: 831664	n:1680000
KS ci ratio: 1.238624e-01	ci left: 5.589225e-04	ci right 6.332928e-04	k: 1000	n:1680000
NAGLU   1680000 perm   1629 sec   (1032 perm/sec)   p_kst 5.952381e-04   p_cons 4.950381e-01   p_joint 1.361310e-03

Joint ci ratio: 8.159323e-02	ci left: 1.308244e-03	ci right 1.420103e-03	k: 2304	n:1690000
Cons ci ratio: 3.045295e-03	ci left: 4.943104e-01	ci right 4.958186e-01	k: 836659	n:1690000
KS ci ratio: 1.233092e-01	ci left: 5.607761e-04	ci right 6.350354e-04	k: 1009	n:1690000
NAGLU   1690000 perm   1646 sec   (1027 perm/sec)   p_kst 5.970414e-04   p_cons 4.950645e-01   p_joint 1.363314e-03

Joint ci ratio: 8.131145e-02	ci left: 1.309769e-03	ci right 1.421353e-03	k: 2320	n:1700000
Cons ci ratio: 3.036302e-03	ci left: 4.943164e-01	ci right 4.958201e-01	k: 841616	n:1700000
KS ci ratio: 1.230051e-01	ci left: 5.603280e-04	ci right 6.343317e-04	k: 1014	n:1700000
NAGLU   1700000 perm   1664 sec   (1022 perm/sec)   p_kst 5.964706e-04   p_cons 4.950682e-01   p_joint 1.364706e-03

Joint ci ratio: 8.106731e-02	ci left: 1.310130e-03	ci right 1.421394e-03	k: 2334	n:1710000
Cons ci ratio: 3.027141e-03	ci left: 4.943632e-01	ci right 4.958625e-01	k: 846643	n:1710000
KS ci ratio: 1.227033e-01	ci left: 5.598853e-04	ci right 6.336360e-04	k: 1019	n:1710000
NAGLU   1710000 perm   1681 sec   (1017 perm/sec)   p_kst 5.959064e-04   p_cons 4.951129e-01   p_joint 1.364912e-03

Joint ci ratio: 8.094623e-02	ci left: 1.306500e-03	ci right 1.417282e-03	k: 2341	n:1720000
Cons ci ratio: 3.018634e-03	ci left: 4.943147e-01	ci right 4.958097e-01	k: 851507	n:1720000
KS ci ratio: 1.224037e-01	ci left: 5.594480e-04	ci right 6.329481e-04	k: 1024	n:1720000
NAGLU   1720000 perm   1699 sec   (1013 perm/sec)   p_kst 5.953488e-04   p_cons 4.950622e-01   p_joint 1.361047e-03

Joint ci ratio: 8.196926e-02	ci left: 1.266104e-03	ci right 1.374883e-03	k: 2283	n:1730000
Cons ci ratio: 3.010063e-03	ci left: 4.942894e-01	ci right 4.957800e-01	k: 856410	n:1730000
KS ci ratio: 1.219287e-01	ci left: 5.606972e-04	ci right 6.340549e-04	k: 1032	n:1730000
NAGLU   1730000 perm   1716 sec   (1008 perm/sec)   p_kst 5.965318e-04   p_cons 4.950347e-01   p_joint 1.319653e-03

Joint ci ratio: 8.273479e-02	ci left: 1.235186e-03	ci right 1.342347e-03	k: 2241	n:1740000
Cons ci ratio: 3.001578e-03	ci left: 4.942620e-01	ci right 4.957484e-01	k: 861309	n:1740000
KS ci ratio: 1.217522e-01	ci left: 5.591464e-04	ci right 6.321876e-04	k: 1035	n:1740000
NAGLU   1740000 perm   1734 sec   (1004 perm/sec)   p_kst 5.948276e-04   p_cons 4.950052e-01   p_joint 1.287931e-03

Joint ci ratio: 8.242280e-02	ci left: 1.237642e-03	ci right 1.344591e-03	k: 2258	n:1750000
Cons ci ratio: 2.992628e-03	ci left: 4.943247e-01	ci right 4.958068e-01	k: 866365	n:1750000
KS ci ratio: 1.214595e-01	ci left: 5.587215e-04	ci right 6.315191e-04	k: 1040	n:1750000
NAGLU   1750000 perm   1752 sec   (999 perm/sec)   p_kst 5.942857e-04   p_cons 4.950657e-01   p_joint 1.290286e-03

Joint ci ratio: 8.224104e-02	ci left: 1.236174e-03	ci right 1.342750e-03	k: 2268	n:1760000
Cons ci ratio: 2.983950e-03	ci left: 4.943543e-01	ci right 4.958321e-01	k: 871364	n:1760000
KS ci ratio: 1.212269e-01	ci left: 5.577507e-04	ci right 6.302727e-04	k: 1044	n:1760000
NAGLU   1760000 perm   1769 sec   (995 perm/sec)   p_kst 5.931818e-04   p_cons 4.950932e-01   p_joint 1.288636e-03

Joint ci ratio: 8.209655e-02	ci left: 1.233617e-03	ci right 1.339777e-03	k: 2276	n:1770000
Cons ci ratio: 2.975384e-03	ci left: 4.943773e-01	ci right 4.958510e-01	k: 876352	n:1770000
KS ci ratio: 1.208228e-01	ci left: 5.584346e-04	ci right 6.307863e-04	k: 1051	n:1770000
NAGLU   1770000 perm   1787 sec   (990 perm/sec)   p_kst 5.937853e-04   p_cons 4.951141e-01   p_joint 1.285876e-03

Joint ci ratio: 8.257022e-02	ci left: 1.212380e-03	ci right 1.317343e-03	k: 2250	n:1780000
Cons ci ratio: 2.966731e-03	ci left: 4.944270e-01	ci right 4.958966e-01	k: 881388	n:1780000
KS ci ratio: 1.205938e-01	ci left: 5.574767e-04	ci right 6.295575e-04	k: 1055	n:1780000
NAGLU   1780000 perm   1805 sec   (986 perm/sec)   p_kst 5.926966e-04   p_cons 4.951618e-01   p_joint 1.264045e-03

Joint ci ratio: 8.242399e-02	ci left: 1.209984e-03	ci right 1.314545e-03	k: 2258	n:1790000
Cons ci ratio: 2.958604e-03	ci left: 4.944003e-01	ci right 4.958657e-01	k: 886288	n:1790000
KS ci ratio: 1.204230e-01	ci left: 5.559877e-04	ci right 6.277670e-04	k: 1058	n:1790000
NAGLU   1790000 perm   1823 sec   (982 perm/sec)   p_kst 5.910615e-04   p_cons 4.951330e-01   p_joint 1.261453e-03

Joint ci ratio: 8.213356e-02	ci left: 1.211968e-03	ci right 1.316314e-03	k: 2274	n:1800000
Cons ci ratio: 2.950624e-03	ci left: 4.943599e-01	ci right 4.958212e-01	k: 891163	n:1800000
KS ci ratio: 1.198583e-01	ci left: 5.582875e-04	ci right 6.300018e-04	k: 1068	n:1800000
NAGLU   1800000 perm   1841 sec   (978 perm/sec)   p_kst 5.933333e-04   p_cons 4.950906e-01   p_joint 1.263333e-03

Joint ci ratio: 8.202561e-02	ci left: 1.208519e-03	ci right 1.312424e-03	k: 2280	n:1810000
Cons ci ratio: 2.942592e-03	ci left: 4.943399e-01	ci right 4.957972e-01	k: 896074	n:1810000
KS ci ratio: 1.196906e-01	ci left: 5.568108e-04	ci right 6.282282e-04	k: 1071	n:1810000
NAGLU   1810000 perm   1859 sec   (974 perm/sec)   p_kst 5.917127e-04   p_cons 4.950685e-01   p_joint 1.259669e-03

Joint ci ratio: 8.175718e-02	ci left: 1.209952e-03	ci right 1.313624e-03	k: 2295	n:1820000
Cons ci ratio: 2.934863e-03	ci left: 4.942794e-01	ci right 4.957327e-01	k: 900911	n:1820000
KS ci ratio: 1.193016e-01	ci left: 5.574826e-04	ci right 6.287375e-04	k: 1078	n:1820000
NAGLU   1820000 perm   1877 sec   (970 perm/sec)   p_kst 5.923077e-04   p_cons 4.950060e-01   p_joint 1.260989e-03

Joint ci ratio: 8.147371e-02	ci left: 1.211905e-03	ci right 1.315367e-03	k: 2311	n:1830000
Cons ci ratio: 2.926990e-03	ci left: 4.942546e-01	ci right 4.957039e-01	k: 905812	n:1830000
KS ci ratio: 1.189165e-01	ci left: 5.581475e-04	ci right 6.292408e-04	k: 1085	n:1830000
NAGLU   1830000 perm   1896 sec   (965 perm/sec)   p_kst 5.928962e-04   p_cons 4.949792e-01   p_joint 1.262842e-03

Joint ci ratio: 8.122812e-02	ci left: 1.212772e-03	ci right 1.315982e-03	k: 2325	n:1840000
Cons ci ratio: 2.918727e-03	ci left: 4.943078e-01	ci right 4.957531e-01	k: 910856	n:1840000
KS ci ratio: 1.186982e-01	ci left: 5.572234e-04	ci right 6.280595e-04	k: 1089	n:1840000
NAGLU   1840000 perm   1914 sec   (962 perm/sec)   p_kst 5.918478e-04   p_cons 4.950304e-01   p_joint 1.263587e-03

Joint ci ratio: 8.093281e-02	ci left: 1.215220e-03	ci right 1.318244e-03	k: 2342	n:1850000
Cons ci ratio: 2.910652e-03	ci left: 4.943398e-01	ci right 4.957813e-01	k: 915862	n:1850000
KS ci ratio: 1.183188e-01	ci left: 5.578830e-04	ci right 6.285605e-04	k: 1096	n:1850000
NAGLU   1850000 perm   1932 sec   (957 perm/sec)   p_kst 5.924324e-04   p_cons 4.950605e-01   p_joint 1.265946e-03

Joint ci ratio: 8.070921e-02	ci left: 1.215534e-03	ci right 1.318287e-03	k: 2355	n:1860000
Cons ci ratio: 2.902629e-03	ci left: 4.943742e-01	ci right 4.958118e-01	k: 920873	n:1860000
KS ci ratio: 1.178363e-01	ci left: 5.595794e-04	ci right 6.301626e-04	k: 1105	n:1860000
NAGLU   1860000 perm   1951 sec   (954 perm/sec)   p_kst 5.940860e-04   p_cons 4.950930e-01   p_joint 1.266129e-03

Joint ci ratio: 8.076098e-02	ci left: 1.207462e-03	ci right 1.309601e-03	k: 2352	n:1870000
Cons ci ratio: 2.894662e-03	ci left: 4.944099e-01	ci right 4.958436e-01	k: 925887	n:1870000
KS ci ratio: 1.174124e-01	ci left: 5.607392e-04	ci right 6.311966e-04	k: 1113	n:1870000
NAGLU   1870000 perm   1969 sec   (950 perm/sec)   p_kst 5.951872e-04   p_cons 4.951267e-01   p_joint 1.257754e-03

Joint ci ratio: 8.055584e-02	ci left: 1.207293e-03	ci right 1.309147e-03	k: 2364	n:1880000
Cons ci ratio: 2.886933e-03	ci left: 4.944154e-01	ci right 4.958453e-01	k: 930845	n:1880000
KS ci ratio: 1.172022e-01	ci left: 5.598218e-04	ci right 6.300293e-04	k: 1117	n:1880000
NAGLU   1880000 perm   1988 sec   (946 perm/sec)   p_kst 5.941489e-04   p_cons 4.951303e-01   p_joint 1.257447e-03

Joint ci ratio: 8.172346e-02	ci left: 1.166174e-03	ci right 1.266052e-03	k: 2297	n:1890000
Cons ci ratio: 2.879265e-03	ci left: 4.944208e-01	ci right 4.958469e-01	k: 935803	n:1890000
KS ci ratio: 1.168890e-01	ci left: 5.599414e-04	ci right 6.299633e-04	k: 1123	n:1890000
NAGLU   1890000 perm   2007 sec   (942 perm/sec)   p_kst 5.941799e-04   p_cons 4.951339e-01   p_joint 1.215344e-03

Joint ci ratio: 8.158167e-02	ci left: 1.164161e-03	ci right 1.263685e-03	k: 2305	n:1900000
Cons ci ratio: 2.871733e-03	ci left: 4.944130e-01	ci right 4.958354e-01	k: 940736	n:1900000
KS ci ratio: 1.168372e-01	ci left: 5.575053e-04	ci right 6.271894e-04	k: 1124	n:1900000
NAGLU   1900000 perm   2026 sec   (938 perm/sec)   p_kst 5.915789e-04   p_cons 4.951242e-01   p_joint 1.213158e-03

Joint ci ratio: 8.130003e-02	ci left: 1.166272e-03	ci right 1.265617e-03	k: 2321	n:1910000
Cons ci ratio: 2.864147e-03	ci left: 4.944252e-01	ci right 4.958439e-01	k: 945707	n:1910000
KS ci ratio: 1.164753e-01	ci left: 5.581444e-04	ci right 6.276775e-04	k: 1131	n:1910000
NAGLU   1910000 perm   2045 sec   (934 perm/sec)   p_kst 5.921466e-04   p_cons 4.951346e-01   p_joint 1.215183e-03

Joint ci ratio: 8.170644e-02	ci left: 1.148462e-03	ci right 1.246802e-03	k: 2298	n:1920000
Cons ci ratio: 2.856691e-03	ci left: 4.944248e-01	ci right 4.958398e-01	k: 950654	n:1920000
KS ci ratio: 1.162190e-01	ci left: 5.577658e-04	ci right 6.270883e-04	k: 1136	n:1920000
NAGLU   1920000 perm   2064 sec   (930 perm/sec)   p_kst 5.916667e-04   p_cons 4.951323e-01   p_joint 1.196875e-03

Joint ci ratio: 8.149403e-02	ci left: 1.148603e-03	ci right 1.246686e-03	k: 2310	n:1930000
Cons ci ratio: 2.849217e-03	ci left: 4.944379e-01	ci right 4.958492e-01	k: 955627	n:1930000
KS ci ratio: 1.159643e-01	ci left: 5.573912e-04	ci right 6.265050e-04	k: 1141	n:1930000
NAGLU   1930000 perm   2083 sec   (927 perm/sec)   p_kst 5.911917e-04   p_cons 4.951435e-01   p_joint 1.196891e-03

Joint ci ratio: 8.131833e-02	ci left: 1.147732e-03	ci right 1.245520e-03	k: 2320	n:1940000
Cons ci ratio: 2.841962e-03	ci left: 4.944225e-01	ci right 4.958301e-01	k: 960545	n:1940000
KS ci ratio: 1.157113e-01	ci left: 5.570207e-04	ci right 6.259276e-04	k: 1146	n:1940000
NAGLU   1940000 perm   2102 sec   (923 perm/sec)   p_kst 5.907216e-04   p_cons 4.951263e-01   p_joint 1.195876e-03

Joint ci ratio: 7.486246e-02	ci left: 1.351528e-03	ci right 1.457141e-03	k: 2737	n:1950000
Cons ci ratio: 2.834748e-03	ci left: 4.944098e-01	ci right 4.958138e-01	k: 965468	n:1950000
KS ci ratio: 1.155101e-01	ci left: 5.561562e-04	ci right 6.248283e-04	k: 1150	n:1950000
NAGLU   1950000 perm   2122 sec   (919 perm/sec)   p_kst 5.897436e-04   p_cons 4.951118e-01   p_joint 1.403590e-03

Joint ci ratio: 7.469899e-02	ci left: 1.350641e-03	ci right 1.455943e-03	k: 2749	n:1960000
Cons ci ratio: 2.827565e-03	ci left: 4.944013e-01	ci right 4.958017e-01	k: 970399	n:1960000
KS ci ratio: 1.153600e-01	ci left: 5.548050e-04	ci right 6.232152e-04	k: 1153	n:1960000
NAGLU   1960000 perm   2141 sec   (915 perm/sec)   p_kst 5.882653e-04   p_cons 4.951015e-01   p_joint 1.402551e-03

Joint ci ratio: 7.446911e-02	ci left: 1.352253e-03	ci right 1.457343e-03	k: 2766	n:1970000
Cons ci ratio: 2.820311e-03	ci left: 4.944153e-01	ci right 4.958121e-01	k: 975374	n:1970000
KS ci ratio: 1.150612e-01	ci left: 5.549467e-04	ci right 6.231851e-04	k: 1159	n:1970000
NAGLU   1970000 perm   2161 sec   (912 perm/sec)   p_kst 5.883249e-04   p_cons 4.951137e-01   p_joint 1.404061e-03

Joint ci ratio: 7.425470e-02	ci left: 1.353354e-03	ci right 1.458214e-03	k: 2782	n:1980000
Cons ci ratio: 2.813058e-03	ci left: 4.944387e-01	ci right 4.958320e-01	k: 980368	n:1980000
KS ci ratio: 1.148634e-01	ci left: 5.541060e-04	ci right 6.221160e-04	k: 1163	n:1980000
NAGLU   1980000 perm   2181 sec   (908 perm/sec)   p_kst 5.873737e-04   p_cons 4.951354e-01   p_joint 1.405051e-03

Joint ci ratio: 7.404212e-02	ci left: 1.354445e-03	ci right 1.459075e-03	k: 2798	n:1990000
Cons ci ratio: 2.806222e-03	ci left: 4.943976e-01	ci right 4.957874e-01	k: 985234	n:1990000
KS ci ratio: 1.144218e-01	ci left: 5.557145e-04	ci right 6.236420e-04	k: 1172	n:1990000
NAGLU   1990000 perm   2201 sec   (904 perm/sec)   p_kst 5.889447e-04   p_cons 4.950925e-01   p_joint 1.406030e-03

Joint ci ratio: 7.451036e-02	ci left: 1.330497e-03	ci right 1.433956e-03	k: 2763	n:2000000
Cons ci ratio: 2.799315e-03	ci left: 4.943783e-01	ci right 4.957647e-01	k: 990143	n:2000000
KS ci ratio: 1.143245e-01	ci left: 5.539073e-04	ci right 6.215524e-04	k: 1174	n:2000000
NAGLU   2000000 perm   2220 sec   (901 perm/sec)   p_kst 5.870000e-04   p_cons 4.950715e-01   p_joint 1.381500e-03

Joint ci ratio: 7.430897e-02	ci left: 1.331201e-03	ci right 1.434423e-03	k: 2778	n:2010000
Cons ci ratio: 2.792395e-03	ci left: 4.943708e-01	ci right 4.957536e-01	k: 995075	n:2010000
KS ci ratio: 1.139855e-01	ci left: 5.545347e-04	ci right 6.220421e-04	k: 1181	n:2010000
NAGLU   2010000 perm   2240 sec   (897 perm/sec)   p_kst 5.875622e-04   p_cons 4.950622e-01   p_joint 1.382090e-03

Joint ci ratio: 7.530624e-02	ci left: 1.289147e-03	ci right 1.390509e-03	k: 2705	n:2020000
Cons ci ratio: 2.785354e-03	ci left: 4.943939e-01	ci right 4.957734e-01	k: 1000069	n:2020000
KS ci ratio: 1.138893e-01	ci left: 5.527513e-04	ci right 6.199810e-04	k: 1183	n:2020000
NAGLU   2020000 perm   2260 sec   (894 perm/sec)   p_kst 5.856436e-04   p_cons 4.950837e-01   p_joint 1.339109e-03

Joint ci ratio: 7.509836e-02	ci left: 1.290047e-03	ci right 1.391187e-03	k: 2720	n:2030000
Cons ci ratio: 2.778480e-03	ci left: 4.943967e-01	ci right 4.957728e-01	k: 1005022	n:2030000
KS ci ratio: 1.135064e-01	ci left: 5.538572e-04	ci right 6.209798e-04	k: 1191	n:2030000
NAGLU   2030000 perm   2280 sec   (890 perm/sec)   p_kst 5.866995e-04   p_cons 4.950847e-01   p_joint 1.339901e-03

Joint ci ratio: 7.498830e-02	ci left: 1.287571e-03	ci right 1.388363e-03	k: 2728	n:2040000
Cons ci ratio: 2.771726e-03	ci left: 4.943867e-01	ci right 4.957594e-01	k: 1009949	n:2040000
KS ci ratio: 1.132691e-01	ci left: 5.535237e-04	ci right 6.204562e-04	k: 1196	n:2040000
NAGLU   2040000 perm   2300 sec   (887 perm/sec)   p_kst 5.862745e-04   p_cons 4.950730e-01   p_joint 1.337255e-03

Joint ci ratio: 7.265329e-02	ci left: 1.366519e-03	ci right 1.470019e-03	k: 2906	n:2050000
Cons ci ratio: 2.764903e-03	ci left: 4.943983e-01	ci right 4.957676e-01	k: 1014920	n:2050000
KS ci ratio: 1.132219e-01	ci left: 5.512976e-04	ci right 6.179313e-04	k: 1197	n:2050000
NAGLU   2050000 perm   2320 sec   (883 perm/sec)   p_kst 5.839024e-04   p_cons 4.950829e-01   p_joint 1.417561e-03

Joint ci ratio: 6.799825e-02	ci left: 1.555901e-03	ci right 1.665896e-03	k: 3317	n:2060000
Cons ci ratio: 2.757948e-03	ci left: 4.944427e-01	ci right 4.958087e-01	k: 1019959	n:2060000
KS ci ratio: 1.129864e-01	ci left: 5.509799e-04	ci right 6.174274e-04	k: 1202	n:2060000
NAGLU   2060000 perm   2341 sec   (880 perm/sec)   p_kst 5.834951e-04   p_cons 4.951257e-01   p_joint 1.610194e-03

Joint ci ratio: 6.787569e-02	ci left: 1.554083e-03	ci right 1.663744e-03	k: 3329	n:2070000
Cons ci ratio: 2.751162e-03	ci left: 4.944655e-01	ci right 4.958282e-01	k: 1024954	n:2070000
KS ci ratio: 1.128459e-01	ci left: 5.497265e-04	ci right 6.159349e-04	k: 1205	n:2070000
NAGLU   2070000 perm   2361 sec   (877 perm/sec)   p_kst 5.821256e-04   p_cons 4.951469e-01   p_joint 1.608213e-03

Joint ci ratio: 6.788616e-02	ci left: 1.546138e-03	ci right 1.655257e-03	k: 3328	n:2080000
Cons ci ratio: 2.744452e-03	ci left: 4.944833e-01	ci right 4.958427e-01	k: 1029939	n:2080000
KS ci ratio: 1.126127e-01	ci left: 5.494196e-04	ci right 6.154453e-04	k: 1210	n:2080000
NAGLU   2080000 perm   2381 sec   (873 perm/sec)   p_kst 5.817308e-04   p_cons 4.951630e-01   p_joint 1.600000e-03

Joint ci ratio: 6.771347e-02	ci left: 1.546737e-03	ci right 1.655609e-03	k: 3345	n:2090000
Cons ci ratio: 2.737822e-03	ci left: 4.944951e-01	ci right 4.958513e-01	k: 1034912	n:2090000
KS ci ratio: 1.122886e-01	ci left: 5.500459e-04	ci right 6.159440e-04	k: 1217	n:2090000
NAGLU   2090000 perm   2402 sec   (870 perm/sec)   p_kst 5.822967e-04   p_cons 4.951732e-01   p_joint 1.600478e-03

Joint ci ratio: 6.757229e-02	ci left: 1.545925e-03	ci right 1.654504e-03	k: 3359	n:2100000
Cons ci ratio: 2.730996e-03	ci left: 4.945516e-01	ci right 4.959046e-01	k: 1039979	n:2100000
KS ci ratio: 1.119673e-01	ci left: 5.506665e-04	ci right 6.164377e-04	k: 1224	n:2100000
NAGLU   2100000 perm   2423 sec   (867 perm/sec)   p_kst 5.828571e-04   p_cons 4.952281e-01   p_joint 1.599524e-03

Joint ci ratio: 7.319889e-02	ci left: 1.307652e-03	ci right 1.407469e-03	k: 2863	n:2110000
Cons ci ratio: 2.724678e-03	ci left: 4.945237e-01	ci right 4.958734e-01	k: 1044869	n:2110000
KS ci ratio: 1.228308e-01	ci left: 4.528256e-04	ci right 5.125403e-04	k: 1017	n:2110000
NAGLU   2110000 perm   2444 sec   (863 perm/sec)   p_kst 4.819905e-04   p_cons 4.951986e-01   p_joint 1.356872e-03

Joint ci ratio: 7.304605e-02	ci left: 1.307041e-03	ci right 1.406594e-03	k: 2875	n:2120000
Cons ci ratio: 2.718400e-03	ci left: 4.944966e-01	ci right 4.958431e-01	k: 1049760	n:2120000
KS ci ratio: 1.224704e-01	ci left: 4.534330e-04	ci right 5.130396e-04	k: 1023	n:2120000
NAGLU   2120000 perm   2464 sec   (860 perm/sec)   p_kst 4.825472e-04   p_cons 4.951698e-01   p_joint 1.356132e-03

Joint ci ratio: 7.279327e-02	ci left: 1.310123e-03	ci right 1.409551e-03	k: 2895	n:2130000
Cons ci ratio: 2.712278e-03	ci left: 4.944490e-01	ci right 4.957923e-01	k: 1054607	n:2130000
KS ci ratio: 1.221725e-01	ci left: 4.535798e-04	ci right 5.130502e-04	k: 1028	n:2130000
NAGLU   2130000 perm   2486 sec   (857 perm/sec)   p_kst 4.826291e-04   p_cons 4.951207e-01   p_joint 1.359155e-03

Joint ci ratio: 7.266798e-02	ci left: 1.308589e-03	ci right 1.407722e-03	k: 2905	n:2140000
Cons ci ratio: 2.706063e-03	ci left: 4.944266e-01	ci right 4.957668e-01	k: 1059507	n:2140000
KS ci ratio: 1.219948e-01	ci left: 4.528193e-04	ci right 5.120974e-04	k: 1031	n:2140000
NAGLU   2140000 perm   2507 sec   (854 perm/sec)   p_kst 4.817757e-04   p_cons 4.950967e-01   p_joint 1.357477e-03

Joint ci ratio: 7.371709e-02	ci left: 1.265060e-03	ci right 1.362338e-03	k: 2823	n:2150000
Cons ci ratio: 2.699846e-03	ci left: 4.944129e-01	ci right 4.957499e-01	k: 1064425	n:2150000
KS ci ratio: 1.218179e-01	ci left: 4.520660e-04	ci right 5.111535e-04	k: 1034	n:2150000
NAGLU   2150000 perm   2528 sec   (850 perm/sec)   p_kst 4.809302e-04   p_cons 4.950814e-01   p_joint 1.313023e-03

Joint ci ratio: 7.634765e-02	ci left: 1.172433e-03	ci right 1.265949e-03	k: 2632	n:2160000
Cons ci ratio: 2.693631e-03	ci left: 4.944066e-01	ci right 4.957406e-01	k: 1069359	n:2160000
KS ci ratio: 1.217005e-01	ci left: 4.508708e-04	ci right 5.097411e-04	k: 1036	n:2160000
NAGLU   2160000 perm   2549 sec   (847 perm/sec)   p_kst 4.796296e-04   p_cons 4.950736e-01   p_joint 1.218519e-03

Joint ci ratio: 7.611666e-02	ci left: 1.174263e-03	ci right 1.267629e-03	k: 2648	n:2170000
Cons ci ratio: 2.687453e-03	ci left: 4.944014e-01	ci right 4.957323e-01	k: 1074295	n:2170000
KS ci ratio: 1.212337e-01	ci left: 4.523677e-04	ci right 5.111907e-04	k: 1044	n:2170000
NAGLU   2170000 perm   2571 sec   (844 perm/sec)   p_kst 4.811060e-04   p_cons 4.950668e-01   p_joint 1.220276e-03

Joint ci ratio: 7.613127e-02	ci left: 1.168427e-03	ci right 1.261347e-03	k: 2647	n:2180000
Cons ci ratio: 2.681550e-03	ci left: 4.943531e-01	ci right 4.956809e-01	k: 1079137	n:2180000
KS ci ratio: 1.210601e-01	ci left: 4.516271e-04	ci right 5.102636e-04	k: 1047	n:2180000
NAGLU   2180000 perm   2592 sec   (841 perm/sec)   p_kst 4.802752e-04   p_cons 4.950170e-01   p_joint 1.214220e-03

Joint ci ratio: 7.591650e-02	ci left: 1.169810e-03	ci right 1.262567e-03	k: 2662	n:2190000
Cons ci ratio: 2.675467e-03	ci left: 4.943458e-01	ci right 4.956706e-01	k: 1084068	n:2190000
KS ci ratio: 1.207723e-01	ci left: 4.517789e-04	ci right 5.102858e-04	k: 1052	n:2190000
NAGLU   2190000 perm   2613 sec   (838 perm/sec)   p_kst 4.803653e-04   p_cons 4.950082e-01   p_joint 1.215525e-03

Joint ci ratio: 7.567525e-02	ci left: 1.172074e-03	ci right 1.264701e-03	k: 2679	n:2200000
Cons ci ratio: 2.669436e-03	ci left: 4.943368e-01	ci right 4.956586e-01	k: 1088995	n:2200000
KS ci ratio: 1.204866e-01	ci left: 4.519295e-04	ci right 5.103076e-04	k: 1057	n:2200000
NAGLU   2200000 perm   2635 sec   (835 perm/sec)   p_kst 4.804545e-04   p_cons 4.949977e-01   p_joint 1.217727e-03

Joint ci ratio: 7.616070e-02	ci left: 1.151678e-03	ci right 1.243303e-03	k: 2645	n:2210000
Cons ci ratio: 2.663643e-03	ci left: 4.942908e-01	ci right 4.956096e-01	k: 1093840	n:2210000
KS ci ratio: 1.203729e-01	ci left: 4.507623e-04	ci right 5.089307e-04	k: 1059	n:2210000
NAGLU   2210000 perm   2657 sec   (832 perm/sec)   p_kst 4.791855e-04   p_cons 4.949502e-01   p_joint 1.196833e-03

Joint ci ratio: 7.595997e-02	ci left: 1.152676e-03	ci right 1.244128e-03	k: 2659	n:2220000
Cons ci ratio: 2.657700e-03	ci left: 4.942804e-01	ci right 4.955962e-01	k: 1098763	n:2220000
KS ci ratio: 1.200900e-01	ci left: 4.509163e-04	ci right 5.089582e-04	k: 1064	n:2220000
NAGLU   2220000 perm   2679 sec   (829 perm/sec)   p_kst 4.792793e-04   p_cons 4.949383e-01   p_joint 1.197748e-03

Joint ci ratio: 7.583185e-02	ci left: 1.151466e-03	ci right 1.242662e-03	k: 2668	n:2230000
Cons ci ratio: 2.651783e-03	ci left: 4.942727e-01	ci right 4.955856e-01	k: 1103692	n:2230000
KS ci ratio: 1.199213e-01	ci left: 4.501992e-04	ci right 5.080615e-04	k: 1067	n:2230000
NAGLU   2230000 perm   2701 sec   (826 perm/sec)   p_kst 4.784753e-04   p_cons 4.949291e-01   p_joint 1.196413e-03

Joint ci ratio: 7.564782e-02	ci left: 1.152020e-03	ci right 1.243028e-03	k: 2681	n:2240000
Cons ci ratio: 2.646042e-03	ci left: 4.942392e-01	ci right 4.955492e-01	k: 1108563	n:2240000
KS ci ratio: 1.195858e-01	ci left: 4.507877e-04	ci right 5.085522e-04	k: 1073	n:2240000
NAGLU   2240000 perm   2722 sec   (823 perm/sec)   p_kst 4.790179e-04   p_cons 4.948942e-01   p_joint 1.196875e-03

Joint ci ratio: 7.546513e-02	ci left: 1.152568e-03	ci right 1.243390e-03	k: 2694	n:2250000
Cons ci ratio: 2.640240e-03	ci left: 4.942247e-01	ci right 4.955317e-01	k: 1113476	n:2250000
KS ci ratio: 1.193084e-01	ci left: 4.509400e-04	ci right 5.085805e-04	k: 1078	n:2250000
NAGLU   2250000 perm   2745 sec   (820 perm/sec)   p_kst 4.791111e-04   p_cons 4.948782e-01   p_joint 1.197333e-03

Joint ci ratio: 7.690734e-02	ci left: 1.104062e-03	ci right 1.192799e-03	k: 2594	n:2260000
Cons ci ratio: 2.634249e-03	ci left: 4.942533e-01	ci right 4.955574e-01	k: 1118486	n:2260000
KS ci ratio: 1.191430e-01	ci left: 4.502326e-04	ci right 5.076972e-04	k: 1081	n:2260000
NAGLU   2260000 perm   2767 sec   (817 perm/sec)   p_kst 4.783186e-04   p_cons 4.949053e-01   p_joint 1.147788e-03

Joint ci ratio: 7.673013e-02	ci left: 1.104383e-03	ci right 1.192932e-03	k: 2606	n:2270000
Cons ci ratio: 2.628337e-03	ci left: 4.942745e-01	ci right 4.955757e-01	k: 1123480	n:2270000
KS ci ratio: 1.189782e-01	ci left: 4.495314e-04	ci right 5.068216e-04	k: 1084	n:2270000
NAGLU   2270000 perm   2789 sec   (814 perm/sec)   p_kst 4.775330e-04   p_cons 4.949251e-01   p_joint 1.148018e-03

Joint ci ratio: 7.649567e-02	ci left: 1.106423e-03	ci right 1.194852e-03	k: 2622	n:2280000
Cons ci ratio: 2.622666e-03	ci left: 4.942570e-01	ci right 4.955553e-01	k: 1128386	n:2280000
KS ci ratio: 1.184877e-01	ci left: 4.513899e-04	ci right 5.086632e-04	k: 1093	n:2280000
NAGLU   2280000 perm   2812 sec   (811 perm/sec)   p_kst 4.793860e-04   p_cons 4.949061e-01   p_joint 1.150000e-03

Joint ci ratio: 7.636482e-02	ci left: 1.105446e-03	ci right 1.193640e-03	k: 2631	n:2290000
Cons ci ratio: 2.616981e-03	ci left: 4.942492e-01	ci right 4.955447e-01	k: 1133314	n:2290000
KS ci ratio: 1.182717e-01	ci left: 4.511138e-04	ci right 5.082404e-04	k: 1097	n:2290000
NAGLU   2290000 perm   2834 sec   (808 perm/sec)   p_kst 4.790393e-04   p_cons 4.948969e-01   p_joint 1.148908e-03

Joint ci ratio: 7.640862e-02	ci left: 1.099360e-03	ci right 1.187121e-03	k: 2628	n:2300000
Cons ci ratio: 2.611468e-03	ci left: 4.942158e-01	ci right 4.955085e-01	k: 1138183	n:2300000
KS ci ratio: 1.180568e-01	ci left: 4.508401e-04	ci right 5.078211e-04	k: 1101	n:2300000
NAGLU   2300000 perm   2856 sec   (805 perm/sec)   p_kst 4.786957e-04   p_cons 4.948622e-01   p_joint 1.142609e-03

Joint ci ratio: 7.613387e-02	ci left: 1.102670e-03	ci right 1.190364e-03	k: 2647	n:2310000
Cons ci ratio: 2.605835e-03	ci left: 4.942122e-01	ci right 4.955021e-01	k: 1143120	n:2310000
KS ci ratio: 1.175247e-01	ci left: 4.530899e-04	ci right 5.100792e-04	k: 1111	n:2310000
NAGLU   2310000 perm   2879 sec   (802 perm/sec)   p_kst 4.809524e-04   p_cons 4.948571e-01   p_joint 1.145887e-03

Joint ci ratio: 7.596194e-02	ci left: 1.102991e-03	ci right 1.190503e-03	k: 2659	n:2320000
Cons ci ratio: 2.600017e-03	ci left: 4.942513e-01	ci right 4.955384e-01	k: 1148156	n:2320000
KS ci ratio: 1.172613e-01	ci left: 4.532288e-04	ci right 5.100990e-04	k: 1116	n:2320000
NAGLU   2320000 perm   2902 sec   (799 perm/sec)   p_kst 4.810345e-04   p_cons 4.948948e-01   p_joint 1.146121e-03

Joint ci ratio: 7.580537e-02	ci left: 1.102888e-03	ci right 1.190205e-03	k: 2670	n:2330000
Cons ci ratio: 2.594454e-03	ci left: 4.942484e-01	ci right 4.955328e-01	k: 1153095	n:2330000
KS ci ratio: 1.169476e-01	ci left: 4.537833e-04	ci right 5.105603e-04	k: 1122	n:2330000
NAGLU   2330000 perm   2925 sec   (797 perm/sec)   p_kst 4.815451e-04   p_cons 4.948906e-01   p_joint 1.145923e-03

Joint ci ratio: 7.566388e-02	ci left: 1.102368e-03	ci right 1.189473e-03	k: 2680	n:2340000
Cons ci ratio: 2.588889e-03	ci left: 4.942528e-01	ci right 4.955344e-01	k: 1158051	n:2340000
KS ci ratio: 1.167918e-01	ci left: 4.530887e-04	ci right 5.096979e-04	k: 1125	n:2340000
NAGLU   2340000 perm   2947 sec   (794 perm/sec)   p_kst 4.807692e-04   p_cons 4.948936e-01   p_joint 1.145299e-03

Joint ci ratio: 7.552319e-02	ci left: 1.101852e-03	ci right 1.188747e-03	k: 2690	n:2350000
Cons ci ratio: 2.583416e-03	ci left: 4.942461e-01	ci right 4.955250e-01	k: 1162981	n:2350000
KS ci ratio: 1.165849e-01	ci left: 4.528131e-04	ci right 5.092808e-04	k: 1129	n:2350000
NAGLU   2350000 perm   2970 sec   (791 perm/sec)   p_kst 4.804255e-04   p_cons 4.948855e-01   p_joint 1.144681e-03

Joint ci ratio: 7.536931e-02	ci left: 1.101756e-03	ci right 1.188459e-03	k: 2701	n:2360000
Cons ci ratio: 2.577954e-03	ci left: 4.942441e-01	ci right 4.955203e-01	k: 1167922	n:2360000
KS ci ratio: 1.164819e-01	ci left: 4.517171e-04	ci right 5.079950e-04	k: 1131	n:2360000
NAGLU   2360000 perm   2993 sec   (789 perm/sec)   p_kst 4.792373e-04   p_cons 4.948822e-01   p_joint 1.144492e-03

Joint ci ratio: 6.987561e-02	ci left: 1.279813e-03	ci right 1.372889e-03	k: 3142	n:2370000
Cons ci ratio: 2.572694e-03	ci left: 4.942097e-01	ci right 4.954832e-01	k: 1172786	n:2370000
KS ci ratio: 1.163279e-01	ci left: 4.510401e-04	ci right 5.071542e-04	k: 1134	n:2370000
NAGLU   2370000 perm   3016 sec   (786 perm/sec)   p_kst 4.784810e-04   p_cons 4.948464e-01   p_joint 1.325738e-03

Joint ci ratio: 6.969839e-02	ci left: 1.281041e-03	ci right 1.373961e-03	k: 3158	n:2380000
Cons ci ratio: 2.567241e-03	ci left: 4.942192e-01	ci right 4.954900e-01	k: 1177754	n:2380000
KS ci ratio: 1.160216e-01	ci left: 4.515927e-04	ci right 5.076175e-04	k: 1140	n:2380000
NAGLU   2380000 perm   3039 sec   (783 perm/sec)   p_kst 4.789916e-04   p_cons 4.948546e-01   p_joint 1.326891e-03

Joint ci ratio: 6.956640e-02	ci left: 1.280614e-03	ci right 1.373320e-03	k: 3170	n:2390000
Cons ci ratio: 2.561969e-03	ci left: 4.942002e-01	ci right 4.954684e-01	k: 1182654	n:2390000
KS ci ratio: 1.158695e-01	ci left: 4.509220e-04	ci right 5.067852e-04	k: 1143	n:2390000
NAGLU   2390000 perm   3062 sec   (781 perm/sec)   p_kst 4.782427e-04   p_cons 4.948343e-01   p_joint 1.326360e-03

Joint ci ratio: 6.939152e-02	ci left: 1.281829e-03	ci right 1.374381e-03	k: 3186	n:2400000
Cons ci ratio: 2.556535e-03	ci left: 4.942193e-01	ci right 4.954848e-01	k: 1187645	n:2400000
KS ci ratio: 1.155668e-01	ci left: 4.514708e-04	ci right 5.072460e-04	k: 1149	n:2400000
NAGLU   2400000 perm   3085 sec   (778 perm/sec)   p_kst 4.787500e-04   p_cons 4.948521e-01   p_joint 1.327500e-03

Joint ci ratio: 6.941352e-02	ci left: 1.275695e-03	ci right 1.367834e-03	k: 3184	n:2410000
Cons ci ratio: 2.551218e-03	ci left: 4.942221e-01	ci right 4.954850e-01	k: 1192597	n:2410000
KS ci ratio: 1.153164e-01	ci left: 4.516123e-04	ci right 5.072758e-04	k: 1154	n:2410000
NAGLU   2410000 perm   3109 sec   (775 perm/sec)   p_kst 4.788382e-04   p_cons 4.948535e-01   p_joint 1.321162e-03

Joint ci ratio: 6.992114e-02	ci left: 1.251746e-03	ci right 1.342843e-03	k: 3138	n:2420000
Cons ci ratio: 2.546044e-03	ci left: 4.942033e-01	ci right 4.954636e-01	k: 1197497	n:2420000
KS ci ratio: 1.149190e-01	ci left: 4.529568e-04	ci right 5.085805e-04	k: 1162	n:2420000
NAGLU   2420000 perm   3132 sec   (773 perm/sec)   p_kst 4.801653e-04   p_cons 4.948335e-01   p_joint 1.296694e-03

Joint ci ratio: 7.060018e-02	ci left: 1.222336e-03	ci right 1.312192e-03	k: 3078	n:2430000
Cons ci ratio: 2.540915e-03	ci left: 4.941819e-01	ci right 4.954395e-01	k: 1202390	n:2430000
KS ci ratio: 1.148204e-01	ci left: 4.518921e-04	ci right 5.073343e-04	k: 1164	n:2430000
NAGLU   2430000 perm   3156 sec   (770 perm/sec)   p_kst 4.790123e-04   p_cons 4.948107e-01   p_joint 1.266667e-03

Joint ci ratio: 6.710157e-02	ci left: 1.349846e-03	ci right 1.443967e-03	k: 3407	n:2440000
Cons ci ratio: 2.535886e-03	ci left: 4.941471e-01	ci right 4.954021e-01	k: 1207250	n:2440000
KS ci ratio: 1.144281e-01	ci left: 4.532248e-04	ci right 5.086277e-04	k: 1172	n:2440000
NAGLU   2440000 perm   3179 sec   (767 perm/sec)   p_kst 4.803279e-04   p_cons 4.947746e-01   p_joint 1.396311e-03

Joint ci ratio: 6.717088e-02	ci left: 1.341527e-03	ci right 1.435168e-03	k: 3400	n:2450000
Cons ci ratio: 2.530664e-03	ci left: 4.941566e-01	ci right 4.954091e-01	k: 1212218	n:2450000
KS ci ratio: 1.142821e-01	ci left: 4.525644e-04	ci right 5.078111e-04	k: 1175	n:2450000
NAGLU   2450000 perm   3203 sec   (765 perm/sec)   p_kst 4.795918e-04   p_cons 4.947829e-01   p_joint 1.387755e-03

Joint ci ratio: 6.708224e-02	ci left: 1.339671e-03	ci right 1.433054e-03	k: 3409	n:2460000
Cons ci ratio: 2.525665e-03	ci left: 4.941283e-01	ci right 4.953782e-01	k: 1217093	n:2460000
KS ci ratio: 1.141366e-01	ci left: 4.519093e-04	ci right 5.070012e-04	k: 1178	n:2460000
NAGLU   2460000 perm   3227 sec   (762 perm/sec)   p_kst 4.788618e-04   p_cons 4.947533e-01   p_joint 1.385772e-03

Joint ci ratio: 6.715149e-02	ci left: 1.331460e-03	ci right 1.424371e-03	k: 3402	n:2470000
Cons ci ratio: 2.520423e-03	ci left: 4.941540e-01	ci right 4.954015e-01	k: 1222101	n:2470000
KS ci ratio: 1.140400e-01	ci left: 4.508663e-04	ci right 5.057814e-04	k: 1180	n:2470000
NAGLU   2470000 perm   3251 sec   (760 perm/sec)   p_kst 4.777328e-04   p_cons 4.947777e-01   p_joint 1.377328e-03

Joint ci ratio: 6.701378e-02	ci left: 1.331642e-03	ci right 1.424367e-03	k: 3416	n:2480000
Cons ci ratio: 2.515363e-03	ci left: 4.941501e-01	ci right 4.953950e-01	k: 1227036	n:2480000
KS ci ratio: 1.137514e-01	ci left: 4.513988e-04	ci right 5.062302e-04	k: 1186	n:2480000
NAGLU   2480000 perm   3275 sec   (757 perm/sec)   p_kst 4.782258e-04   p_cons 4.947726e-01   p_joint 1.377419e-03

Joint ci ratio: 6.691598e-02	ci left: 1.330243e-03	ci right 1.422730e-03	k: 3426	n:2490000
Cons ci ratio: 2.510221e-03	ci left: 4.941684e-01	ci right 4.954108e-01	k: 1232026	n:2490000
KS ci ratio: 1.135602e-01	ci left: 4.511467e-04	ci right 5.058492e-04	k: 1190	n:2490000
NAGLU   2490000 perm   3299 sec   (755 perm/sec)   p_kst 4.779116e-04   p_cons 4.947896e-01   p_joint 1.375904e-03

Joint ci ratio: 6.678943e-02	ci left: 1.330035e-03	ci right 1.422326e-03	k: 3439	n:2500000
Cons ci ratio: 2.505138e-03	ci left: 4.941812e-01	ci right 4.954212e-01	k: 1237003	n:2500000
KS ci ratio: 1.134651e-01	ci left: 4.501194e-04	ci right 5.046485e-04	k: 1192	n:2500000
NAGLU   2500000 perm   3323 sec   (752 perm/sec)   p_kst 4.768000e-04   p_cons 4.948012e-01   p_joint 1.375600e-03

Joint ci ratio: 6.671198e-02	ci left: 1.327870e-03	ci right 1.419900e-03	k: 3447	n:2510000
Cons ci ratio: 2.500021e-03	ci left: 4.942068e-01	ci right 4.954442e-01	k: 1242012	n:2510000
KS ci ratio: 1.134176e-01	ci left: 4.487131e-04	ci right 5.030477e-04	k: 1193	n:2510000
NAGLU   2510000 perm   3347 sec   (750 perm/sec)   p_kst 4.752988e-04   p_cons 4.948255e-01   p_joint 1.373307e-03

Joint ci ratio: 6.652886e-02	ci left: 1.330015e-03	ci right 1.421931e-03	k: 3466	n:2520000
Cons ci ratio: 2.495064e-03	ci left: 4.942063e-01	ci right 4.954413e-01	k: 1246956	n:2520000
KS ci ratio: 1.131337e-01	ci left: 4.492460e-04	ci right 5.034999e-04	k: 1199	n:2520000
NAGLU   2520000 perm   3371 sec   (748 perm/sec)   p_kst 4.757937e-04   p_cons 4.948238e-01   p_joint 1.375397e-03

Joint ci ratio: 6.709338e-02	ci left: 1.302215e-03	ci right 1.393003e-03	k: 3408	n:2530000
Cons ci ratio: 2.490276e-03	ci left: 4.941778e-01	ci right 4.954104e-01	k: 1251829	n:2530000
KS ci ratio: 1.128519e-01	ci left: 4.497749e-04	ci right 5.039483e-04	k: 1205	n:2530000
NAGLU   2530000 perm   3395 sec   (745 perm/sec)   p_kst 4.762846e-04   p_cons 4.947941e-01   p_joint 1.347036e-03

Joint ci ratio: 6.711328e-02	ci left: 1.296314e-03	ci right 1.386719e-03	k: 3406	n:2540000
Cons ci ratio: 2.485308e-03	ci left: 4.941912e-01	ci right 4.954214e-01	k: 1256808	n:2540000
KS ci ratio: 1.126652e-01	ci left: 4.495345e-04	ci right 5.035834e-04	k: 1209	n:2540000
NAGLU   2540000 perm   3420 sec   (743 perm/sec)   p_kst 4.759843e-04   p_cons 4.948063e-01   p_joint 1.340945e-03

Joint ci ratio: 6.511534e-02	ci left: 1.372995e-03	ci right 1.465790e-03	k: 3618	n:2550000
Cons ci ratio: 2.480501e-03	ci left: 4.941783e-01	ci right 4.954060e-01	k: 1261720	n:2550000
KS ci ratio: 1.124331e-01	ci left: 4.496772e-04	ci right 5.036246e-04	k: 1214	n:2550000
NAGLU   2550000 perm   3445 sec   (740 perm/sec)   p_kst 4.760784e-04   p_cons 4.947922e-01   p_joint 1.418824e-03

Joint ci ratio: 6.507052e-02	ci left: 1.369553e-03	ci right 1.462049e-03	k: 3623	n:2560000
Cons ci ratio: 2.419846e-03	ci left: 5.055788e-01	ci right 5.068040e-01	k: 1295850	n:2560000
KS ci ratio: 1.121565e-01	ci left: 4.501986e-04	ci right 5.040668e-04	k: 1220	n:2560000
NAGLU   2560000 perm   3469 sec   (738 perm/sec)   p_kst 4.765625e-04   p_cons 5.061914e-01   p_joint 1.415234e-03

Joint ci ratio: 6.512471e-02	ci left: 1.361928e-03	ci right 1.453988e-03	k: 3617	n:2570000
Cons ci ratio: 2.415192e-03	ci left: 5.055679e-01	ci right 5.067908e-01	k: 1300881	n:2570000
KS ci ratio: 1.119276e-01	ci left: 4.503379e-04	ci right 5.041055e-04	k: 1225	n:2570000
NAGLU   2570000 perm   3494 sec   (736 perm/sec)   p_kst 4.766537e-04   p_cons 5.061794e-01   p_joint 1.407393e-03

Joint ci ratio: 6.497221e-02	ci left: 1.363131e-03	ci right 1.455048e-03	k: 3634	n:2580000
Cons ci ratio: 2.410480e-03	ci left: 5.055746e-01	ci right 5.067951e-01	k: 1305957	n:2580000
KS ci ratio: 1.117455e-01	ci left: 4.500994e-04	ci right 5.037453e-04	k: 1229	n:2580000
NAGLU   2580000 perm   3518 sec   (733 perm/sec)   p_kst 4.763566e-04   p_cons 5.061849e-01   p_joint 1.408527e-03

Joint ci ratio: 6.487416e-02	ci left: 1.362046e-03	ci right 1.453747e-03	k: 3645	n:2590000
Cons ci ratio: 2.405777e-03	ci left: 5.055851e-01	ci right 5.068033e-01	k: 1311043	n:2590000
KS ci ratio: 1.116548e-01	ci left: 4.491122e-04	ci right 5.025942e-04	k: 1231	n:2590000
NAGLU   2590000 perm   3543 sec   (731 perm/sec)   p_kst 4.752896e-04   p_cons 5.061942e-01   p_joint 1.407336e-03

Joint ci ratio: 6.499942e-02	ci left: 1.351510e-03	ci right 1.442683e-03	k: 3631	n:2600000
Cons ci ratio: 2.401204e-03	ci left: 5.055744e-01	ci right 5.067902e-01	k: 1316074	n:2600000
KS ci ratio: 1.115191e-01	ci left: 4.485064e-04	ci right 5.018472e-04	k: 1234	n:2600000
NAGLU   2600000 perm   3568 sec   (729 perm/sec)   p_kst 4.746154e-04   p_cons 5.061823e-01   p_joint 1.396538e-03

Joint ci ratio: 6.489234e-02	ci left: 1.350855e-03	ci right 1.441828e-03	k: 3643	n:2610000
Cons ci ratio: 2.396551e-03	ci left: 5.055856e-01	ci right 5.067991e-01	k: 1321162	n:2610000
KS ci ratio: 1.113390e-01	ci left: 4.482779e-04	ci right 5.014996e-04	k: 1238	n:2610000
NAGLU   2610000 perm   3593 sec   (727 perm/sec)   p_kst 4.743295e-04   p_cons 5.061923e-01   p_joint 1.395785e-03

Joint ci ratio: 6.476804e-02	ci left: 1.350956e-03	ci right 1.441755e-03	k: 3657	n:2620000
Cons ci ratio: 2.391940e-03	ci left: 5.055937e-01	ci right 5.068048e-01	k: 1326242	n:2620000
KS ci ratio: 1.111597e-01	ci left: 4.480511e-04	ci right 5.011547e-04	k: 1242	n:2620000
NAGLU   2620000 perm   3618 sec   (724 perm/sec)   p_kst 4.740458e-04   p_cons 5.061992e-01   p_joint 1.395802e-03

Joint ci ratio: 6.467974e-02	ci left: 1.349560e-03	ci right 1.440137e-03	k: 3667	n:2630000
Cons ci ratio: 2.387325e-03	ci left: 5.056081e-01	ci right 5.068170e-01	k: 1331339	n:2630000
KS ci ratio: 1.110258e-01	ci left: 4.474565e-04	ci right 5.004215e-04	k: 1245	n:2630000
NAGLU   2630000 perm   3643 sec   (722 perm/sec)   p_kst 4.733840e-04   p_cons 5.062125e-01   p_joint 1.394297e-03

Joint ci ratio: 6.455666e-02	ci left: 1.349665e-03	ci right 1.440071e-03	k: 3681	n:2640000
Cons ci ratio: 2.382758e-03	ci left: 5.056179e-01	ci right 5.068245e-01	k: 1336424	n:2640000
KS ci ratio: 1.108481e-01	ci left: 4.472347e-04	ci right 5.000832e-04	k: 1249	n:2640000
NAGLU   2640000 perm   3668 sec   (720 perm/sec)   p_kst 4.731061e-04   p_cons 5.062212e-01   p_joint 1.394318e-03

Joint ci ratio: 6.445174e-02	ci left: 1.349027e-03	ci right 1.439238e-03	k: 3693	n:2650000
Cons ci ratio: 2.378163e-03	ci left: 5.056390e-01	ci right 5.068433e-01	k: 1341539	n:2650000
KS ci ratio: 1.106712e-01	ci left: 4.470146e-04	ci right 4.997473e-04	k: 1253	n:2650000
NAGLU   2650000 perm   3693 sec   (718 perm/sec)   p_kst 4.728302e-04   p_cons 5.062411e-01   p_joint 1.393585e-03

Joint ci ratio: 6.438213e-02	ci left: 1.346915e-03	ci right 1.436883e-03	k: 3701	n:2660000
Cons ci ratio: 2.373605e-03	ci left: 5.056576e-01	ci right 5.068596e-01	k: 1346648	n:2660000
KS ci ratio: 1.104512e-01	ci left: 4.471618e-04	ci right 4.998002e-04	k: 1258	n:2660000
NAGLU   2660000 perm   3719 sec   (715 perm/sec)   p_kst 4.729323e-04   p_cons 5.062586e-01   p_joint 1.391353e-03

Joint ci ratio: 6.415709e-02	ci left: 1.351451e-03	ci right 1.441396e-03	k: 3727	n:2670000
Cons ci ratio: 2.369200e-03	ci left: 5.056496e-01	ci right 5.068493e-01	k: 1351686	n:2670000
KS ci ratio: 1.100584e-01	ci left: 4.487649e-04	ci right 5.013920e-04	k: 1267	n:2670000
NAGLU   2670000 perm   3744 sec   (713 perm/sec)   p_kst 4.745318e-04   p_cons 5.062494e-01   p_joint 1.395880e-03

Joint ci ratio: 6.406268e-02	ci left: 1.350447e-03	ci right 1.440188e-03	k: 3738	n:2680000
Cons ci ratio: 2.364775e-03	ci left: 5.056509e-01	ci right 5.068484e-01	k: 1356749	n:2680000
KS ci ratio: 1.098420e-01	ci left: 4.489048e-04	ci right 5.014381e-04	k: 1272	n:2680000
NAGLU   2680000 perm   3770 sec   (711 perm/sec)   p_kst 4.746269e-04   p_cons 5.062496e-01   p_joint 1.394776e-03

Joint ci ratio: 6.392602e-02	ci left: 1.351280e-03	ci right 1.440877e-03	k: 3754	n:2690000
Cons ci ratio: 2.360455e-03	ci left: 5.056351e-01	ci right 5.068304e-01	k: 1361766	n:2690000
KS ci ratio: 1.094985e-01	ci left: 4.501284e-04	ci right 5.026295e-04	k: 1280	n:2690000
NAGLU   2690000 perm   3796 sec   (709 perm/sec)   p_kst 4.758364e-04   p_cons 5.062327e-01   p_joint 1.395539e-03

Joint ci ratio: 6.382414e-02	ci left: 1.350649e-03	ci right 1.440056e-03	k: 3766	n:2700000
Cons ci ratio: 2.355944e-03	ci left: 5.056649e-01	ci right 5.068580e-01	k: 1366906	n:2700000
KS ci ratio: 1.093705e-01	ci left: 4.495420e-04	ci right 5.019094e-04	k: 1283	n:2700000
NAGLU   2700000 perm   3822 sec   (706 perm/sec)   p_kst 4.751852e-04   p_cons 5.062615e-01   p_joint 1.394815e-03

Joint ci ratio: 6.368901e-02	ci left: 1.351475e-03	ci right 1.440740e-03	k: 3782	n:2710000
Cons ci ratio: 2.351542e-03	ci left: 5.056769e-01	ci right 5.068678e-01	k: 1371998	n:2710000
KS ci ratio: 1.090735e-01	ci left: 4.503956e-04	ci right 5.027109e-04	k: 1290	n:2710000
NAGLU   2710000 perm   3848 sec   (704 perm/sec)   p_kst 4.760148e-04   p_cons 5.062723e-01   p_joint 1.395572e-03

Joint ci ratio: 6.354635e-02	ci left: 1.352657e-03	ci right 1.441793e-03	k: 3799	n:2720000
Cons ci ratio: 2.347314e-03	ci left: 5.056571e-01	ci right 5.068458e-01	k: 1377004	n:2720000
KS ci ratio: 1.086952e-01	ci left: 4.519585e-04	ci right 5.042616e-04	k: 1299	n:2720000
NAGLU   2720000 perm   3874 sec   (702 perm/sec)   p_kst 4.775735e-04   p_cons 5.062515e-01   p_joint 1.396691e-03

Joint ci ratio: 6.343794e-02	ci left: 1.352388e-03	ci right 1.441349e-03	k: 3812	n:2730000
Cons ci ratio: 2.342864e-03	ci left: 5.056895e-01	ci right 5.068760e-01	k: 1382152	n:2730000
KS ci ratio: 1.085284e-01	ci left: 4.517284e-04	ci right 5.039195e-04	k: 1303	n:2730000
NAGLU   2730000 perm   3900 sec   (700 perm/sec)   p_kst 4.772894e-04   p_cons 5.062828e-01   p_joint 1.396337e-03

Joint ci ratio: 6.332180e-02	ci left: 1.352481e-03	ci right 1.441279e-03	k: 3826	n:2740000
Cons ci ratio: 2.338622e-03	ci left: 5.056826e-01	ci right 5.068670e-01	k: 1387193	n:2740000
KS ci ratio: 1.082382e-01	ci left: 4.525652e-04	ci right 5.047043e-04	k: 1310	n:2740000
NAGLU   2740000 perm   3926 sec   (698 perm/sec)   p_kst 4.781022e-04   p_cons 5.062748e-01   p_joint 1.396350e-03

Joint ci ratio: 6.431405e-02	ci left: 1.305695e-03	ci right 1.392815e-03	k: 3709	n:2750000
Cons ci ratio: 2.334411e-03	ci left: 5.056740e-01	ci right 5.068562e-01	k: 1392229	n:2750000
KS ci ratio: 1.081146e-01	ci left: 4.519809e-04	ci right 5.039894e-04	k: 1313	n:2750000
NAGLU   2750000 perm   3953 sec   (696 perm/sec)   p_kst 4.774545e-04   p_cons 5.062651e-01   p_joint 1.348727e-03

Joint ci ratio: 6.421031e-02	ci left: 1.305242e-03	ci right 1.392186e-03	k: 3721	n:2760000
Cons ci ratio: 2.330198e-03	ci left: 5.056708e-01	ci right 5.068509e-01	k: 1397280	n:2760000
KS ci ratio: 1.079505e-01	ci left: 4.517534e-04	ci right 5.036518e-04	k: 1317	n:2760000
NAGLU   2760000 perm   3979 sec   (694 perm/sec)   p_kst 4.771739e-04   p_cons 5.062609e-01   p_joint 1.348188e-03

Joint ci ratio: 6.435781e-02	ci left: 1.294492e-03	ci right 1.380925e-03	k: 3704	n:2770000
Cons ci ratio: 2.326028e-03	ci left: 5.056634e-01	ci right 5.068413e-01	k: 1402319	n:2770000
KS ci ratio: 1.076649e-01	ci left: 4.525815e-04	ci right 5.044288e-04	k: 1324	n:2770000
NAGLU   2770000 perm   4006 sec   (691 perm/sec)   p_kst 4.779783e-04   p_cons 5.062523e-01   p_joint 1.337184e-03

Joint ci ratio: 6.430585e-02	ci left: 1.291959e-03	ci right 1.378150e-03	k: 3710	n:2780000
Cons ci ratio: 2.321601e-03	ci left: 5.057161e-01	ci right 5.068918e-01	k: 1407525	n:2780000
KS ci ratio: 1.073010e-01	ci left: 4.541039e-04	ci right 5.059387e-04	k: 1333	n:2780000
NAGLU   2780000 perm   4033 sec   (689 perm/sec)   p_kst 4.794964e-04   p_cons 5.063040e-01   p_joint 1.334532e-03

Joint ci ratio: 6.421942e-02	ci left: 1.290855e-03	ci right 1.376852e-03	k: 3720	n:2790000
Cons ci ratio: 2.317405e-03	ci left: 5.057239e-01	ci right 5.068976e-01	k: 1412607	n:2790000
KS ci ratio: 1.071405e-01	ci left: 4.538715e-04	ci right 5.055974e-04	k: 1337	n:2790000
NAGLU   2790000 perm   4060 sec   (687 perm/sec)   p_kst 4.792115e-04   p_cons 5.063108e-01   p_joint 1.333333e-03

Joint ci ratio: 6.465601e-02	ci left: 1.268674e-03	ci right 1.353791e-03	k: 3670	n:2800000
Cons ci ratio: 2.313298e-03	ci left: 5.057174e-01	ci right 5.068890e-01	k: 1417649	n:2800000
KS ci ratio: 1.070206e-01	ci left: 4.532933e-04	ci right 5.048918e-04	k: 1340	n:2800000
NAGLU   2800000 perm   4086 sec   (685 perm/sec)   p_kst 4.785714e-04   p_cons 5.063032e-01   p_joint 1.310714e-03

Joint ci ratio: 6.453307e-02	ci left: 1.269061e-03	ci right 1.354036e-03	k: 3684	n:2810000
Cons ci ratio: 2.309090e-03	ci left: 5.057377e-01	ci right 5.069072e-01	k: 1422766	n:2810000
KS ci ratio: 1.068217e-01	ci left: 4.534119e-04	ci right 5.049219e-04	k: 1345	n:2810000
NAGLU   2810000 perm   4114 sec   (683 perm/sec)   p_kst 4.786477e-04   p_cons 5.063224e-01   p_joint 1.311032e-03

Joint ci ratio: 6.441082e-02	ci left: 1.269446e-03	ci right 1.354279e-03	k: 3698	n:2820000
Cons ci ratio: 2.305025e-03	ci left: 5.057315e-01	ci right 5.068989e-01	k: 1427809	n:2820000
KS ci ratio: 1.065450e-01	ci left: 4.542201e-04	ci right 5.056799e-04	k: 1352	n:2820000
NAGLU   2820000 perm   4141 sec   (681 perm/sec)   p_kst 4.794326e-04   p_cons 5.063152e-01   p_joint 1.311348e-03

Joint ci ratio: 6.434134e-02	ci left: 1.267741e-03	ci right 1.352366e-03	k: 3706	n:2830000
Cons ci ratio: 2.300980e-03	ci left: 5.057258e-01	ci right 5.068911e-01	k: 1432853	n:2830000
KS ci ratio: 1.064271e-01	ci left: 4.536469e-04	ci right 5.049814e-04	k: 1355	n:2830000
NAGLU   2830000 perm   4168 sec   (679 perm/sec)   p_kst 4.787986e-04   p_cons 5.063085e-01   p_joint 1.309541e-03

Joint ci ratio: 6.425476e-02	ci left: 1.266742e-03	ci right 1.351182e-03	k: 3716	n:2840000
Cons ci ratio: 2.296875e-03	ci left: 5.057377e-01	ci right 5.069010e-01	k: 1437947	n:2840000
KS ci ratio: 1.063487e-01	ci left: 4.527350e-04	ci right 5.039262e-04	k: 1357	n:2840000
NAGLU   2840000 perm   4195 sec   (677 perm/sec)   p_kst 4.778169e-04   p_cons 5.063194e-01   p_joint 1.308451e-03

Joint ci ratio: 6.413409e-02	ci left: 1.267131e-03	ci right 1.351432e-03	k: 3730	n:2850000
Cons ci ratio: 2.292917e-03	ci left: 5.057225e-01	ci right 5.068838e-01	k: 1442964	n:2850000
KS ci ratio: 1.060756e-01	ci left: 4.535374e-04	ci right 5.046794e-04	k: 1364	n:2850000
NAGLU   2850000 perm   4223 sec   (675 perm/sec)   p_kst 4.785965e-04   p_cons 5.063032e-01   p_joint 1.308772e-03

Joint ci ratio: 6.453381e-02	ci left: 1.246874e-03	ci right 1.330364e-03	k: 3684	n:2860000
Cons ci ratio: 2.288861e-03	ci left: 5.057330e-01	ci right 5.068922e-01	k: 1448054	n:2860000
KS ci ratio: 1.056891e-01	ci left: 4.553555e-04	ci right 5.065038e-04	k: 1374	n:2860000
NAGLU   2860000 perm   4250 sec   (673 perm/sec)   p_kst 4.804196e-04   p_cons 5.063126e-01   p_joint 1.288112e-03

Joint ci ratio: 6.443772e-02	ci left: 1.246301e-03	ci right 1.329623e-03	k: 3695	n:2870000
Cons ci ratio: 2.284786e-03	ci left: 5.057524e-01	ci right 5.069096e-01	k: 1453170	n:2870000
KS ci ratio: 1.055357e-01	ci left: 4.551259e-04	ci right 5.061695e-04	k: 1378	n:2870000
NAGLU   2870000 perm   4277 sec   (671 perm/sec)   p_kst 4.801394e-04   p_cons 5.063310e-01   p_joint 1.287456e-03

Joint ci ratio: 6.433338e-02	ci left: 1.246073e-03	ci right 1.329240e-03	k: 3707	n:2880000
Cons ci ratio: 2.280769e-03	ci left: 5.057637e-01	ci right 5.069189e-01	k: 1458263	n:2880000
KS ci ratio: 1.054211e-01	ci left: 4.545597e-04	ci right 5.054812e-04	k: 1381	n:2880000
NAGLU   2880000 perm   4305 sec   (669 perm/sec)   p_kst 4.795139e-04   p_cons 5.063413e-01   p_joint 1.287153e-03

Joint ci ratio: 6.423819e-02	ci left: 1.245506e-03	ci right 1.328508e-03	k: 3718	n:2890000
Cons ci ratio: 2.276724e-03	ci left: 5.057857e-01	ci right 5.069389e-01	k: 1463387	n:2890000
KS ci ratio: 1.051930e-01	ci left: 4.550083e-04	ci right 5.058629e-04	k: 1387	n:2890000
NAGLU   2890000 perm   4332 sec   (667 perm/sec)   p_kst 4.799308e-04   p_cons 5.063623e-01   p_joint 1.286505e-03

Joint ci ratio: 6.427295e-02	ci left: 1.239854e-03	ci right 1.322526e-03	k: 3714	n:2900000
Cons ci ratio: 2.272715e-03	ci left: 5.058044e-01	ci right 5.069556e-01	k: 1468502	n:2900000
KS ci ratio: 1.049664e-01	ci left: 4.554539e-04	ci right 5.062418e-04	k: 1393	n:2900000
NAGLU   2900000 perm   4360 sec   (665 perm/sec)   p_kst 4.803448e-04   p_cons 5.063800e-01   p_joint 1.280690e-03

Joint ci ratio: 6.413495e-02	ci left: 1.241004e-03	ci right 1.323568e-03	k: 3730	n:2910000
Cons ci ratio: 2.268791e-03	ci left: 5.058089e-01	ci right 5.069581e-01	k: 1473576	n:2910000
KS ci ratio: 1.047038e-01	ci left: 4.562312e-04	ci right 5.069707e-04	k: 1400	n:2910000
NAGLU   2910000 perm   4387 sec   (663 perm/sec)   p_kst 4.810997e-04   p_cons 5.063835e-01   p_joint 1.281787e-03

Joint ci ratio: 6.464894e-02	ci left: 1.216873e-03	ci right 1.298505e-03	k: 3671	n:2920000
Cons ci ratio: 2.265012e-03	ci left: 5.057856e-01	ci right 5.069329e-01	k: 1478569	n:2920000
KS ci ratio: 1.045174e-01	ci left: 4.563363e-04	ci right 5.069916e-04	k: 1405	n:2920000
NAGLU   2920000 perm   4415 sec   (661 perm/sec)   p_kst 4.811644e-04   p_cons 5.063592e-01   p_joint 1.257192e-03

Joint ci ratio: 6.457868e-02	ci left: 1.215406e-03	ci right 1.296848e-03	k: 3679	n:2930000
Cons ci ratio: 2.261041e-03	ci left: 5.058093e-01	ci right 5.069545e-01	k: 1483699	n:2930000
KS ci ratio: 1.044432e-01	ci left: 4.554436e-04	ci right 5.059617e-04	k: 1407	n:2930000
NAGLU   2930000 perm   4442 sec   (660 perm/sec)   p_kst 4.802048e-04   p_cons 5.063819e-01   p_joint 1.255631e-03

Joint ci ratio: 6.449990e-02	ci left: 1.214284e-03	ci right 1.295547e-03	k: 3688	n:2940000
Cons ci ratio: 2.257166e-03	ci left: 5.058161e-01	ci right 5.069594e-01	k: 1488780	n:2940000
KS ci ratio: 1.043692e-01	ci left: 4.545570e-04	ci right 5.049388e-04	k: 1409	n:2940000
NAGLU   2940000 perm   4470 sec   (658 perm/sec)   p_kst 4.792517e-04   p_cons 5.063878e-01   p_joint 1.254422e-03

Joint ci ratio: 6.444758e-02	ci left: 1.212169e-03	ci right 1.293222e-03	k: 3694	n:2950000
Cons ci ratio: 2.253420e-03	ci left: 5.057988e-01	ci right 5.069402e-01	k: 1493790	n:2950000
KS ci ratio: 1.042215e-01	ci left: 4.543367e-04	ci right 5.046184e-04	k: 1413	n:2950000
NAGLU   2950000 perm   4499 sec   (656 perm/sec)   p_kst 4.789831e-04   p_cons 5.063695e-01   p_joint 1.252203e-03

Joint ci ratio: 6.427379e-02	ci left: 1.214722e-03	ci right 1.295719e-03	k: 3714	n:2960000
Cons ci ratio: 2.249442e-03	ci left: 5.058370e-01	ci right 5.069765e-01	k: 1498964	n:2960000
KS ci ratio: 1.037819e-01	ci left: 4.567504e-04	ci right 5.070731e-04	k: 1425	n:2960000
NAGLU   2960000 perm   4527 sec   (654 perm/sec)   p_kst 4.814189e-04   p_cons 5.064068e-01   p_joint 1.254730e-03

Joint ci ratio: 6.411858e-02	ci left: 1.216595e-03	ci right 1.297514e-03	k: 3732	n:2970000
Cons ci ratio: 2.245536e-03	ci left: 5.058639e-01	ci right 5.070014e-01	k: 1504105	n:2970000
KS ci ratio: 1.035281e-01	ci left: 4.575083e-04	ci right 5.077837e-04	k: 1432	n:2970000
NAGLU   2970000 perm   4556 sec   (652 perm/sec)   p_kst 4.821549e-04   p_cons 5.064327e-01   p_joint 1.256566e-03

Joint ci ratio: 6.424809e-02	ci left: 1.207560e-03	ci right 1.288046e-03	k: 3717	n:2980000
Cons ci ratio: 2.241827e-03	ci left: 5.058510e-01	ci right 5.069866e-01	k: 1509128	n:2980000
KS ci ratio: 1.033120e-01	ci left: 4.579344e-04	ci right 5.081452e-04	k: 1438	n:2980000
NAGLU   2980000 perm   4584 sec   (650 perm/sec)   p_kst 4.825503e-04   p_cons 5.064188e-01   p_joint 1.247315e-03

Joint ci ratio: 6.417051e-02	ci left: 1.206483e-03	ci right 1.286796e-03	k: 3726	n:2990000
Cons ci ratio: 2.238090e-03	ci left: 5.058485e-01	ci right 5.069822e-01	k: 1514182	n:2990000
KS ci ratio: 1.032045e-01	ci left: 4.573803e-04	ci right 5.074750e-04	k: 1441	n:2990000
NAGLU   2990000 perm   4613 sec   (648 perm/sec)   p_kst 4.819398e-04   p_cons 5.064154e-01   p_joint 1.246154e-03

Joint ci ratio: 6.402460e-02	ci left: 1.208037e-03	ci right 1.288264e-03	k: 3743	n:3000000
Cons ci ratio: 2.234450e-03	ci left: 5.058287e-01	ci right 5.069606e-01	k: 1519184	n:3000000
KS ci ratio: 1.028839e-01	ci left: 4.587784e-04	ci right 5.088607e-04	k: 1450	n:3000000
NAGLU   3000000 perm   4642 sec   (646 perm/sec)   p_kst 4.833333e-04   p_cons 5.063947e-01   p_joint 1.247667e-03

Joint ci ratio: 6.387969e-02	ci left: 1.209581e-03	ci right 1.289722e-03	k: 3760	n:3010000
Cons ci ratio: 2.230679e-03	ci left: 5.058423e-01	ci right 5.069723e-01	k: 1524286	n:3010000
KS ci ratio: 1.026365e-01	ci left: 4.595200e-04	ci right 5.095554e-04	k: 1457	n:3010000
NAGLU   3010000 perm   4670 sec   (644 perm/sec)   p_kst 4.840532e-04   p_cons 5.064073e-01   p_joint 1.249169e-03

Joint ci ratio: 6.378650e-02	ci left: 1.209160e-03	ci right 1.289152e-03	k: 3771	n:3020000
Cons ci ratio: 2.227025e-03	ci left: 5.058336e-01	ci right 5.069617e-01	k: 1529321	n:3020000
KS ci ratio: 1.025663e-01	ci left: 4.586437e-04	ci right 5.085474e-04	k: 1459	n:3020000
NAGLU   3020000 perm   4699 sec   (643 perm/sec)   p_kst 4.831126e-04   p_cons 5.063977e-01   p_joint 1.248675e-03

Joint ci ratio: 6.367686e-02	ci left: 1.209391e-03	ci right 1.289256e-03	k: 3784	n:3030000
Cons ci ratio: 2.223406e-03	ci left: 5.058214e-01	ci right 5.069476e-01	k: 1534345	n:3030000
KS ci ratio: 1.024261e-01	ci left: 4.584163e-04	ci right 5.082230e-04	k: 1463	n:3030000
NAGLU   3030000 perm   4728 sec   (641 perm/sec)   p_kst 4.828383e-04   p_cons 5.063845e-01   p_joint 1.248845e-03

Joint ci ratio: 6.359293e-02	ci left: 1.208650e-03	ci right 1.288357e-03	k: 3794	n:3040000
Cons ci ratio: 2.219838e-03	ci left: 5.058016e-01	ci right 5.069260e-01	k: 1539346	n:3040000
KS ci ratio: 1.022864e-01	ci left: 4.581904e-04	ci right 5.079007e-04	k: 1467	n:3040000
NAGLU   3040000 perm   4756 sec   (639 perm/sec)   p_kst 4.825658e-04   p_cons 5.063638e-01   p_joint 1.248026e-03

Joint ci ratio: 6.348429e-02	ci left: 1.208882e-03	ci right 1.288463e-03	k: 3807	n:3050000
Cons ci ratio: 2.216178e-03	ci left: 5.058066e-01	ci right 5.069291e-01	k: 1544422	n:3050000
KS ci ratio: 1.021474e-01	ci left: 4.579661e-04	ci right 5.075804e-04	k: 1471	n:3050000
NAGLU   3050000 perm   4786 sec   (637 perm/sec)   p_kst 4.822951e-04   p_cons 5.063679e-01   p_joint 1.248197e-03

Joint ci ratio: 6.340943e-02	ci left: 1.207826e-03	ci right 1.287240e-03	k: 3816	n:3060000
Cons ci ratio: 2.212595e-03	ci left: 5.057982e-01	ci right 5.069188e-01	k: 1549457	n:3060000
KS ci ratio: 1.021128e-01	ci left: 4.567879e-04	ci right 5.062568e-04	k: 1472	n:3060000
NAGLU   3060000 perm   4815 sec   (636 perm/sec)   p_kst 4.810458e-04   p_cons 5.063585e-01   p_joint 1.247059e-03

Joint ci ratio: 6.331000e-02	ci left: 1.207739e-03	ci right 1.287018e-03	k: 3828	n:3070000
Cons ci ratio: 2.208930e-03	ci left: 5.058122e-01	ci right 5.069311e-01	k: 1554561	n:3070000
KS ci ratio: 1.019054e-01	ci left: 4.572046e-04	ci right 5.066120e-04	k: 1478	n:3070000
NAGLU   3070000 perm   4843 sec   (634 perm/sec)   p_kst 4.814332e-04   p_cons 5.063717e-01   p_joint 1.246906e-03

Joint ci ratio: 6.359345e-02	ci left: 1.192953e-03	ci right 1.271626e-03	k: 3794	n:3080000
Cons ci ratio: 2.205340e-03	ci left: 5.058136e-01	ci right 5.069306e-01	k: 1559626	n:3080000
KS ci ratio: 1.017336e-01	ci left: 4.573022e-04	ci right 5.066319e-04	k: 1483	n:3080000
NAGLU   3080000 perm   4872 sec   (632 perm/sec)   p_kst 4.814935e-04   p_cons 5.063721e-01   p_joint 1.231818e-03

Joint ci ratio: 6.349315e-02	ci left: 1.192914e-03	ci right 1.271456e-03	k: 3806	n:3090000
Cons ci ratio: 2.201707e-03	ci left: 5.058285e-01	ci right 5.069437e-01	k: 1564733	n:3090000
KS ci ratio: 1.014945e-01	ci left: 4.580300e-04	ci right 5.073152e-04	k: 1490	n:3090000
NAGLU   3090000 perm   4902 sec   (630 perm/sec)   p_kst 4.822006e-04   p_cons 5.063861e-01   p_joint 1.231715e-03

Joint ci ratio: 6.411168e-02	ci left: 1.165893e-03	ci right 1.243431e-03	k: 3733	n:3100000
Cons ci ratio: 2.198128e-03	ci left: 5.058349e-01	ci right 5.069483e-01	k: 1569814	n:3100000
KS ci ratio: 1.012232e-01	ci left: 4.590678e-04	ci right 5.083247e-04	k: 1498	n:3100000
NAGLU   3100000 perm   4932 sec   (629 perm/sec)   p_kst 4.832258e-04   p_cons 5.063916e-01   p_joint 1.204194e-03

Joint ci ratio: 6.397472e-02	ci left: 1.167206e-03	ci right 1.244660e-03	k: 3749	n:3110000
Cons ci ratio: 2.194624e-03	ci left: 5.058284e-01	ci right 5.069401e-01	k: 1574855	n:3110000
KS ci ratio: 1.008538e-01	ci left: 4.610393e-04	ci right 5.103165e-04	k: 1509	n:3110000
NAGLU   3110000 perm   4961 sec   (627 perm/sec)   p_kst 4.852090e-04   p_cons 5.063842e-01   p_joint 1.205466e-03

Joint ci ratio: 6.386411e-02	ci left: 1.167565e-03	ci right 1.244903e-03	k: 3762	n:3120000
Cons ci ratio: 2.191261e-03	ci left: 5.057935e-01	ci right 5.069033e-01	k: 1579807	n:3120000
KS ci ratio: 1.006872e-01	ci left: 4.611238e-04	ci right 5.103238e-04	k: 1514	n:3120000
NAGLU   3120000 perm   4990 sec   (625 perm/sec)   p_kst 4.852564e-04   p_cons 5.063484e-01   p_joint 1.205769e-03

Joint ci ratio: 6.374561e-02	ci left: 1.168237e-03	ci right 1.245470e-03	k: 3776	n:3130000
Cons ci ratio: 2.187757e-03	ci left: 5.057945e-01	ci right 5.069026e-01	k: 1584871	n:3130000
KS ci ratio: 1.005545e-01	ci left: 4.608963e-04	ci right 5.100035e-04	k: 1518	n:3130000
NAGLU   3130000 perm   5020 sec   (624 perm/sec)   p_kst 4.849840e-04   p_cons 5.063486e-01   p_joint 1.206390e-03

Joint ci ratio: 6.392391e-02	ci left: 1.157935e-03	ci right 1.234709e-03	k: 3755	n:3140000
Cons ci ratio: 2.184404e-03	ci left: 5.057650e-01	ci right 5.068713e-01	k: 1589839	n:3140000
KS ci ratio: 1.004554e-01	ci left: 4.603599e-04	ci right 5.093587e-04	k: 1521	n:3140000
NAGLU   3140000 perm   5049 sec   (622 perm/sec)   p_kst 4.843949e-04   p_cons 5.063182e-01   p_joint 1.195860e-03

Joint ci ratio: 6.382203e-02	ci left: 1.158008e-03	ci right 1.234660e-03	k: 3767	n:3150000
Cons ci ratio: 2.180971e-03	ci left: 5.057572e-01	ci right 5.068618e-01	k: 1594875	n:3150000
KS ci ratio: 1.003237e-01	ci left: 4.601364e-04	ci right 5.090434e-04	k: 1525	n:3150000
NAGLU   3150000 perm   5079 sec   (620 perm/sec)   p_kst 4.841270e-04   p_cons 5.063095e-01   p_joint 1.195873e-03

Joint ci ratio: 6.373753e-02	ci left: 1.157457e-03	ci right 1.233968e-03	k: 3777	n:3160000
Cons ci ratio: 2.177591e-03	ci left: 5.057413e-01	ci right 5.068441e-01	k: 1599885	n:3160000
KS ci ratio: 1.000943e-01	ci left: 4.608399e-04	ci right 5.097032e-04	k: 1532	n:3160000
NAGLU   3160000 perm   5109 sec   (619 perm/sec)   p_kst 4.848101e-04   p_cons 5.062927e-01   p_joint 1.195253e-03

Joint ci ratio: 6.368704e-02	ci left: 1.155668e-03	ci right 1.231998e-03	k: 3783	n:3170000
Cons ci ratio: 2.174219e-03	ci left: 5.057271e-01	ci right 5.068281e-01	k: 1604900	n:3170000
KS ci ratio: 1.000292e-01	ci left: 4.600013e-04	ci right 5.087420e-04	k: 1534	n:3170000
NAGLU   3170000 perm   5139 sec   (617 perm/sec)   p_kst 4.839117e-04   p_cons 5.062776e-01   p_joint 1.193375e-03

Joint ci ratio: 6.361147e-02	ci left: 1.154819e-03	ci right 1.230999e-03	k: 3792	n:3180000
Cons ci ratio: 2.170807e-03	ci left: 5.057258e-01	ci right 5.068251e-01	k: 1609956	n:3180000
KS ci ratio: 9.993159e-02	ci left: 4.594746e-04	ci right 5.081092e-04	k: 1537	n:3180000
NAGLU   3180000 perm   5169 sec   (615 perm/sec)   p_kst 4.833333e-04   p_cons 5.062755e-01   p_joint 1.192453e-03

Outputting figure to mutsig2_images.part000000000111/NAGLU.4_2256_3180000_0.00048333_0.50628_0.0011925.png
                gene_name: NAGLU
               theta_stop: 0.100 
                    nperm: 3180000 
                     p_ks: 0.00048 
        ci_ks_bounds_left: 0.00046 
       ci_ks_bounds_right: 0.00051 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.0012 
     ci_joint_bounds_left: 0.0012 
    ci_joint_bounds_right: 0.0012 

Current progress: 65 percent done.
MYO19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.146546e-02	ci left: 1.802855e-01	ci right 1.956967e-01	k: 1879	n:10000
Cons ci ratio: 1.994172e-01	ci left: 3.348089e-02	ci right 4.099178e-02	k: 371	n:10000
KS ci ratio: 1.833616e-02	ci left: 8.128353e-01	ci right 8.279776e-01	k: 8205	n:10000
MYO19   10000 perm   2 sec   (5261 perm/sec)   p_kst 8.205000e-01   p_cons 3.710000e-02   p_joint 1.879000e-01

Joint ci ratio: 6.078369e-02	ci left: 1.668916e-01	ci right 1.774039e-01	k: 3442	n:20000
Cons ci ratio: 1.404254e-01	ci left: 3.486113e-02	ci right 4.017442e-02	k: 749	n:20000
KS ci ratio: 1.311676e-02	ci left: 8.116208e-01	ci right 8.223869e-01	k: 16341	n:20000
MYO19   20000 perm   4 sec   (4689 perm/sec)   p_kst 8.170500e-01   p_cons 3.745000e-02   p_joint 1.721000e-01

Joint ci ratio: 3.664933e-02	ci left: 2.709800e-01	ci right 2.811301e-01	k: 8281	n:30000
Cons ci ratio: 1.142889e-01	ci left: 3.557287e-02	ci right 3.991724e-02	k: 1131	n:30000
KS ci ratio: 1.074846e-02	ci left: 8.115345e-01	ci right 8.203376e-01	k: 24479	n:30000
MYO19   30000 perm   7 sec   (4483 perm/sec)   p_kst 8.159667e-01   p_cons 3.770000e-02   p_joint 2.760333e-01

Joint ci ratio: 4.367210e-02	ci left: 1.639762e-01	ci right 1.713221e-01	k: 6705	n:40000
Cons ci ratio: 1.028014e-01	ci left: 3.326907e-02	ci right 3.689883e-02	k: 1402	n:40000
KS ci ratio: 9.297285e-03	ci left: 8.124949e-01	ci right 8.201091e-01	k: 32653	n:40000
MYO19   40000 perm   9 sec   (4337 perm/sec)   p_kst 8.163250e-01   p_cons 3.505000e-02   p_joint 1.676250e-01

Joint ci ratio: 3.523543e-02	ci left: 1.949121e-01	ci right 2.019230e-01	k: 9920	n:50000
Cons ci ratio: 8.958634e-02	ci left: 3.522541e-02	ci right 3.854864e-02	k: 1843	n:50000
KS ci ratio: 8.300882e-03	ci left: 8.134414e-01	ci right 8.202418e-01	k: 40843	n:50000
MYO19   50000 perm   12 sec   (4220 perm/sec)   p_kst 8.168600e-01   p_cons 3.686000e-02   p_joint 1.984000e-01

Outputting figure to mutsig2_images.part000000000111/MYO19.3_3069_50000_0.81686_0.03686_0.1984.png
                gene_name: MYO19
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 67 percent done.
MYO1F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.921521e-02	ci left: 2.955875e-01	ci right 3.137265e-01	k: 3046	n:10000
Cons ci ratio: 2.433543e-02	ci left: 7.129034e-01	ci right 7.305672e-01	k: 7218	n:10000
KS ci ratio: 8.951618e-02	ci left: 1.536497e-01	ci right 1.681484e-01	k: 1608	n:10000
MYO1F   10000 perm   2 sec   (4893 perm/sec)   p_kst 1.608000e-01   p_cons 7.218000e-01   p_joint 3.046000e-01

Outputting figure to mutsig2_images.part000000000111/MYO1F.3_3409_10000_0.1608_0.7218_0.3046.png
                gene_name: MYO1F
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 68 percent done.
MYO7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.096428e-02	ci left: 7.693191e-01	ci right 7.857189e-01	k: 7776	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
MYO7B   10000 perm   3 sec   (3954 perm/sec)   p_kst 1   p_cons 7.776000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYO7B.3_6535_10000_1_0.7776_1.png
                gene_name: MYO7B
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
MYO9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.226904e-02	ci left: 4.524903e-01	ci right 4.721317e-01	k: 4623	n:10000
KS ci ratio: 1.644352e-02	ci left: 8.432573e-01	ci right 8.573380e-01	k: 8504	n:10000
MYO9B   10000 perm   3 sec   (3670 perm/sec)   p_kst 8.504000e-01   p_cons 4.623000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYO9B.3_6641_10000_0.8504_0.4623_1.png
                gene_name: MYO9B
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
MYST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.327743e-02	ci left: 7.305765e-01	ci right 7.478839e-01	k: 7393	n:10000
KS ci ratio: 4.369932e-02	ci left: 4.360249e-01	ci right 4.556067e-01	k: 4458	n:10000
MYST1   10000 perm   2 sec   (6055 perm/sec)   p_kst 4.458000e-01   p_cons 7.393000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYST1.3_1513_10000_0.4458_0.7393_1.png
                gene_name: MYST1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
N4BP2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.918069e-02	ci left: 3.788311e-01	ci right 3.980340e-01	k: 3884	n:10000
Cons ci ratio: 2.312049e-02	ci left: 7.332037e-01	ci right 7.504552e-01	k: 7419	n:10000
KS ci ratio: 6.328272e-02	ci left: 2.684428e-01	ci right 2.860871e-01	k: 2772	n:10000
N4BP2L1   10000 perm   1 sec   (6674 perm/sec)   p_kst 2.772000e-01   p_cons 7.419000e-01   p_joint 3.884000e-01

Outputting figure to mutsig2_images.part000000000111/N4BP2L1.3_825_10000_0.2772_0.7419_0.3884.png
                gene_name: N4BP2L1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 74 percent done.
NAALADL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.399846e-03	ci left: 9.410771e-01	ci right 9.500611e-01	k: 9457	n:10000
Cons ci ratio: 2.536206e-02	ci left: 6.958521e-01	ci right 7.138284e-01	k: 7049	n:10000
KS ci ratio: 2.170226e-02	ci left: 7.569681e-01	ci right 7.736771e-01	k: 7654	n:10000
NAALADL1   10000 perm   2 sec   (5766 perm/sec)   p_kst 7.654000e-01   p_cons 7.049000e-01   p_joint 9.457000e-01

Outputting figure to mutsig2_images.part000000000111/NAALADL1.3_2295_10000_0.7654_0.7049_0.9457.png
                gene_name: NAALADL1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 75 percent done.
NAGPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.755337e-02	ci left: 8.255431e-01	ci right 8.402624e-01	k: 8330	n:10000
Cons ci ratio: 5.755268e-02	ci left: 3.076861e-01	ci right 3.260207e-01	k: 3168	n:10000
KS ci ratio: 3.802803e-02	ci left: 5.052515e-01	ci right 5.249398e-01	k: 5151	n:10000
NAGPA   10000 perm   2 sec   (6133 perm/sec)   p_kst 5.151000e-01   p_cons 3.168000e-01   p_joint 8.330000e-01

Outputting figure to mutsig2_images.part000000000111/NAGPA.3_1588_10000_0.5151_0.3168_0.833.png
                gene_name: NAGPA
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 77 percent done.
NANOS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.492393e-02	ci left: 2.067847e-01	ci right 2.229817e-01	k: 2148	n:10000
Cons ci ratio: 7.172305e-02	ci left: 2.216827e-01	ci right 2.382749e-01	k: 2299	n:10000
KS ci ratio: 8.192190e-02	ci left: 1.786127e-01	ci right 1.939705e-01	k: 1862	n:10000
NANOS2   10000 perm   1 sec   (7020 perm/sec)   p_kst 1.862000e-01   p_cons 2.299000e-01   p_joint 2.148000e-01

Outputting figure to mutsig2_images.part000000000111/NANOS2.3_421_10000_0.1862_0.2299_0.2148.png
                gene_name: NANOS2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 78 percent done.
MYNN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.581766e-02	ci left: 3.209831e-01	ci right 3.395159e-01	k: 3302	n:10000
Cons ci ratio: 2.282482e-02	ci left: 7.381561e-01	ci right 7.553000e-01	k: 7468	n:10000
KS ci ratio: 9.867446e-02	ci left: 1.295340e-01	ci right 1.430787e-01	k: 1362	n:10000
MYNN   10000 perm   2 sec   (6499 perm/sec)   p_kst 1.362000e-01   p_cons 7.468000e-01   p_joint 3.302000e-01

Outputting figure to mutsig2_images.part000000000111/MYNN.2_1861_10000_0.1362_0.7468_0.3302.png
                gene_name: MYNN
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 80 percent done.
MYO1G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.986261e-03	ci left: 9.657293e-01	ci right 9.725938e-01	k: 9693	n:10000
KS ci ratio: 2.019297e-02	ci left: 7.821871e-01	ci right 7.982435e-01	k: 7903	n:10000
MYO1G   10000 perm   2 sec   (5642 perm/sec)   p_kst 7.903000e-01   p_cons 9.693000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/MYO1G.2_3145_10000_0.7903_0.9693_1.png
                gene_name: MYO1G
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
MYO5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.730108e-02	ci left: 3.095710e-01	ci right 3.279347e-01	k: 3187	n:10000
Cons ci ratio: 8.853449e-02	ci left: 1.565950e-01	ci right 1.712014e-01	k: 1638	n:10000
KS ci ratio: 2.667938e-02	ci left: 6.741808e-01	ci right 6.925123e-01	k: 6834	n:10000
MYO5B   10000 perm   2 sec   (4362 perm/sec)   p_kst 6.834000e-01   p_cons 1.638000e-01   p_joint 3.187000e-01

Outputting figure to mutsig2_images.part000000000111/MYO5B.2_5707_10000_0.6834_0.1638_0.3187.png
                gene_name: MYO5B
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 83 percent done.
MYOC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.709916e-02	ci left: 1.974200e-01	ci right 2.133520e-01	k: 2053	n:10000
Cons ci ratio: 7.357380e-02	ci left: 2.128999e-01	ci right 2.292629e-01	k: 2210	n:10000
KS ci ratio: 4.152849e-02	ci left: 4.612762e-01	ci right 4.809407e-01	k: 4711	n:10000
MYOC   10000 perm   2 sec   (6377 perm/sec)   p_kst 4.711000e-01   p_cons 2.210000e-01   p_joint 2.053000e-01

Outputting figure to mutsig2_images.part000000000111/MYOC.2_1527_10000_0.4711_0.221_0.2053.png
                gene_name: MYOC
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 84 percent done.
MYOM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.249378e-02	ci left: 1.765467e-01	ci right 1.918378e-01	k: 1841	n:10000
Cons ci ratio: 8.961576e-02	ci left: 1.533552e-01	ci right 1.678431e-01	k: 1605	n:10000
KS ci ratio: 2.647618e-02	ci left: 6.775056e-01	ci right 6.957856e-01	k: 6867	n:10000
MYOM3   10000 perm   2 sec   (4794 perm/sec)   p_kst 6.867000e-01   p_cons 1.605000e-01   p_joint 1.841000e-01

Outputting figure to mutsig2_images.part000000000111/MYOM3.2_4458_10000_0.6867_0.1605_0.1841.png
                gene_name: MYOM3
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 86 percent done.
MYOZ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.435137e-02	ci left: 2.093488e-01	ci right 2.256161e-01	k: 2174	n:10000
Cons ci ratio: 3.426589e-02	ci left: 5.570197e-01	ci right 5.765413e-01	k: 5668	n:10000
KS ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
MYOZ3   10000 perm   1 sec   (6980 perm/sec)   p_kst 4.280000e-02   p_cons 5.668000e-01   p_joint 2.174000e-01

Joint ci ratio: 4.079958e-02	ci left: 3.093103e-01	ci right 3.222433e-01	k: 6315	n:20000
Cons ci ratio: 2.425581e-02	ci left: 5.593974e-01	ci right 5.731833e-01	k: 11326	n:20000
KS ci ratio: 1.309216e-01	ci left: 4.008492e-02	ci right 4.574894e-02	k: 857	n:20000
MYOZ3   20000 perm   3 sec   (6053 perm/sec)   p_kst 4.285000e-02   p_cons 5.663000e-01   p_joint 3.157500e-01

Joint ci ratio: 7.480044e-02	ci left: 8.072102e-02	ci right 8.702651e-02	k: 2515	n:30000
Cons ci ratio: 2.061302e-02	ci left: 5.409124e-01	ci right 5.522119e-01	k: 16397	n:30000
KS ci ratio: 1.088110e-01	ci left: 3.920603e-02	ci right 4.374998e-02	k: 1243	n:30000
MYOZ3   30000 perm   5 sec   (5716 perm/sec)   p_kst 4.143333e-02   p_cons 5.465667e-01   p_joint 8.383333e-02

Joint ci ratio: 7.019484e-02	ci left: 6.978062e-02	ci right 7.488168e-02	k: 2892	n:40000
Cons ci ratio: 1.787742e-02	ci left: 5.409551e-01	ci right 5.507383e-01	k: 21834	n:40000
KS ci ratio: 9.455108e-02	ci left: 3.924870e-02	ci right 4.316826e-02	k: 1647	n:40000
MYOZ3   40000 perm   7 sec   (5484 perm/sec)   p_kst 4.117500e-02   p_cons 5.458500e-01   p_joint 7.230000e-02

Outputting figure to mutsig2_images.part000000000111/MYOZ3.2_780_40000_0.041175_0.54585_0.0723.png
                gene_name: MYOZ3
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.072 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.075 

Current progress: 87 percent done.
MYSM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.775176e-02	ci left: 3.928679e-01	ci right 4.121890e-01	k: 4025	n:10000
Cons ci ratio: 7.008223e-02	ci left: 2.298781e-01	ci right 2.466746e-01	k: 2382	n:10000
KS ci ratio: 2.017470e-02	ci left: 7.824912e-01	ci right 7.985392e-01	k: 7906	n:10000
MYSM1   10000 perm   2 sec   (5713 perm/sec)   p_kst 7.906000e-01   p_cons 2.382000e-01   p_joint 4.025000e-01

Outputting figure to mutsig2_images.part000000000111/MYSM1.2_2567_10000_0.7906_0.2382_0.4025.png
                gene_name: MYSM1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 88 percent done.
N6AMT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.047793e-02	ci left: 6.136175e-01	ci right 6.327106e-01	k: 6232	n:10000
KS ci ratio: 1.135109e-02	ci left: 9.172915e-01	ci right 9.278607e-01	k: 9227	n:10000
N6AMT2   10000 perm   1 sec   (7045 perm/sec)   p_kst 9.227000e-01   p_cons 6.232000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/N6AMT2.2_661_10000_0.9227_0.6232_1.png
                gene_name: N6AMT2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
NAA35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.692518e-02	ci left: 8.356181e-01	ci right 8.499816e-01	k: 8429	n:10000
KS ci ratio: 1.069109e-01	ci left: 1.121295e-01	ci right 1.248936e-01	k: 1184	n:10000
NAA35   10000 perm   2 sec   (5970 perm/sec)   p_kst 1.184000e-01   p_cons 8.429000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.171326e-02	ci left: 8.434554e-01	ci right 8.534430e-01	k: 16970	n:20000
KS ci ratio: 7.500766e-02	ci left: 1.156252e-01	ci right 1.246856e-01	k: 2402	n:20000
NAA35   20000 perm   4 sec   (5204 perm/sec)   p_kst 1.201000e-01   p_cons 8.485000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/NAA35.2_2266_20000_0.1201_0.8485_1.png
                gene_name: NAA35
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
NAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.185996e-02	ci left: 9.105972e-01	ci right 9.215590e-01	k: 9162	n:10000
Cons ci ratio: 1.048147e-01	ci left: 1.162323e-01	ci right 1.291883e-01	k: 1226	n:10000
KS ci ratio: 7.002437e-02	ci left: 2.301744e-01	ci right 2.469782e-01	k: 2385	n:10000
NAB1   10000 perm   1 sec   (6683 perm/sec)   p_kst 2.385000e-01   p_cons 1.226000e-01   p_joint 9.162000e-01

Joint ci ratio: 1.403687e-02	ci left: 7.902464e-01	ci right 8.014675e-01	k: 15918	n:20000
Cons ci ratio: 7.372326e-02	ci left: 1.192654e-01	ci right 1.284443e-01	k: 2476	n:20000
KS ci ratio: 4.965868e-02	ci left: 2.316158e-01	ci right 2.434606e-01	k: 4750	n:20000
NAB1   20000 perm   3 sec   (5837 perm/sec)   p_kst 2.375000e-01   p_cons 1.238000e-01   p_joint 7.959000e-01

Outputting figure to mutsig2_images.part000000000111/NAB1.2_1492_20000_0.2375_0.1238_0.7959.png
                gene_name: NAB1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 93 percent done.
NACC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.740610e-02	ci left: 3.963535e-01	ci right 4.157013e-01	k: 4060	n:10000
Cons ci ratio: 6.460297e-02	ci left: 2.603270e-01	ci right 2.778077e-01	k: 2690	n:10000
KS ci ratio: 1.648225e-02	ci left: 8.426459e-01	ci right 8.567497e-01	k: 8498	n:10000
NACC1   10000 perm   2 sec   (6412 perm/sec)   p_kst 8.498000e-01   p_cons 2.690000e-01   p_joint 4.060000e-01

Outputting figure to mutsig2_images.part000000000111/NACC1.2_1604_10000_0.8498_0.269_0.406.png
                gene_name: NACC1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 94 percent done.
NADK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.030300e-02	ci left: 6.163304e-01	ci right 6.353963e-01	k: 6259	n:10000
KS ci ratio: 5.627496e-02	ci left: 3.174100e-01	ci right 3.358911e-01	k: 3266	n:10000
NADK   10000 perm   2 sec   (6557 perm/sec)   p_kst 3.266000e-01   p_cons 6.259000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000111/NADK.2_1385_10000_0.3266_0.6259_1.png
                gene_name: NADK
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
NADSYN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.477448e-02	ci left: 3.293229e-01	ci right 3.479712e-01	k: 3386	n:10000
Cons ci ratio: 1.951498e-02	ci left: 7.934435e-01	ci right 8.091806e-01	k: 8014	n:10000
KS ci ratio: 6.709020e-02	ci left: 2.458864e-01	ci right 2.630569e-01	k: 2544	n:10000
NADSYN1   10000 perm   2 sec   (5881 perm/sec)   p_kst 2.544000e-01   p_cons 8.014000e-01   p_joint 3.386000e-01

Outputting figure to mutsig2_images.part000000000111/NADSYN1.2_2205_10000_0.2544_0.8014_0.3386.png
                gene_name: NADSYN1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 97 percent done.
NAGK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.458556e-02	ci left: 4.261509e-01	ci right 4.456865e-01	k: 4359	n:10000
Cons ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
KS ci ratio: 2.830889e-02	ci left: 6.478024e-01	ci right 6.665060e-01	k: 6572	n:10000
NAGK   10000 perm   1 sec   (6710 perm/sec)   p_kst 6.572000e-01   p_cons 7.270000e-02   p_joint 4.359000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 9.902981e-02	ci left: 6.904119e-02	ci right 7.628364e-02	k: 1452	n:20000
KS ci ratio: 2.002488e-02	ci left: 6.504237e-01	ci right 6.636306e-01	k: 13141	n:20000
NAGK   20000 perm   3 sec   (5840 perm/sec)   p_kst 6.570500e-01   p_cons 7.260000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000111/NAGK.2_1213_20000_0.65705_0.0726_1.png
                gene_name: NAGK
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 99 percent done.
NAIF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.198004e-02	ci left: 7.523136e-01	ci right 7.691342e-01	k: 7608	n:10000
Cons ci ratio: 4.989186e-02	ci left: 3.720645e-01	ci right 3.912045e-01	k: 3816	n:10000
KS ci ratio: 3.711733e-02	ci left: 5.173580e-01	ci right 5.370262e-01	k: 5272	n:10000
NAIF1   10000 perm   1 sec   (6846 perm/sec)   p_kst 5.272000e-01   p_cons 3.816000e-01   p_joint 7.608000e-01

Outputting figure to mutsig2_images.part000000000111/NAIF1.2_992_10000_0.5272_0.3816_0.7608.png
                gene_name: NAIF1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000111
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 111 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1714>
Subject: Job 9894028: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1714>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000112> was used as the working directory.
Started at Sat Oct  6 00:20:46 2012
Results reported at Sat Oct  6 03:50:48 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000112.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000112.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 112  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000112.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  12544.60 sec.
    Max Memory :      3631 MB
    Max Swap   :      5989 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
112
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 112
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 112: processing genes 10008 - 10097
Calculating significance of each gene.
Using projection method.
10008	NANOS3	1
10009	NANP	1
10010	NANS	8.580102e-01
10011	NAP1L1	7.115139e-01
10012	NAP1L2	1.015425e-01
10013	NAP1L3	3.529699e-03
10014	NAP1L4	8.265322e-01
10015	NAP1L5	1
10016	NAPA	3.026813e-01
10017	NAPB	4.698810e-01
10018	NAPEPLD	3.363693e-02
10019	NAPG	6.726385e-01
10020	NAPRT1	1
10021	NAPSA	8.418620e-01
10022	NARF	6.078376e-01
10023	NARFL	8.627950e-01
10024	NARG2	9.147456e-01
10025	NARS	4.770568e-01
10026	NARS2	2.777533e-01
10027	NASP	1
10028	NAT1	1
10029	NAT10	4.361790e-01
10030	NAT15	6.803812e-01
10031	NAT2	1
10032	NAT6	1
10033	NAT8	1
10034	NAT8B	6.606728e-01
10035	NAT8L	1
10036	NAT9	5.571281e-02
10037	NAV1	7.343584e-01
10038	NAV2	5.514482e-01
10039	NAV3	2.255078e-01
10040	NBAS	9.965769e-01
10041	NBEA	6.392349e-02
10042	NBEAL1	5.041472e-01
10043	NBEAL2	8.254500e-01
10044	NBL1	1
10045	NBN	8.191943e-01
10046	NBPF1	8.797353e-01
10047	NBPF14	1
10048	NBPF15	6.276037e-02
10049	NBPF16	5.088691e-01
10050	NBPF3	7.702989e-01
10051	NBPF7	6.263265e-01
10052	NBR1	8.166039e-01
10053	NCALD	1
10054	NCAM1	7.728684e-01
10055	NCAM2	4.951764e-05
10056	NCAN	3.754916e-01
In gene NCAPD2 the following bins exceed PROBCAP:
    COAD-AA-A00K	categ 6	N = 4330    n = 1	mu =   5.86e-07
10057	NCAPD2	8.064350e-01
10058	NCAPD3	3.774026e-01
10059	NCAPG	2.530294e-02
10060	NCAPG2	4.511009e-01
10061	NCAPH	4.000286e-01
10062	NCAPH2	1
10063	NCBP1	2.041622e-01
10064	NCBP2	3.486125e-01
10065	NCCRP1	1
10066	NCDN	5.762511e-01
10067	NCEH1	2.106953e-01
10068	NCF1	6.630585e-01
10069	NCF2	4.940904e-01
10070	NCF4	3.764601e-01
10071	NCK1	8.416625e-01
10072	NCK2	1
10073	NCKAP1	2.003781e-01
10074	NCKAP1L	1.846396e-02
10075	NCKAP5	1.032418e-02
10076	NCKAP5L	9.997279e-01
10077	NCKIPSD	4.971818e-01
10078	NCL	6.741506e-01
10079	NCLN	1
10080	NCOA1	4.254223e-01
10081	NCOA2	8.048984e-01
10082	NCOA3	3.693480e-01
10083	NCOA4	3.206056e-01
10084	NCOA5	1.259626e-01
10085	NCOA6	7.307998e-01
10086	NCOA7	4.804562e-01
10087	NCOR1	7.581600e-01
10088	NCOR2	9.999865e-01
10089	NCR1	5.215917e-01
10090	NCR2	1
10091	NCR3	4.292595e-01
10092	NCS1	6.505176e-01
10093	NCSTN	2.914202e-01
10094	NDC80	7.855572e-01
10095	NDE1	1
10096	NDEL1	1.037504e-01
10097	NDFIP1	2.025767e-01
Done

Running MutSig 2:
Scatter job 112: processing genes 10008 - 10097
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NCKAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.427666e-01	ci left: 6.507499e-02	ci right 7.517717e-02	k: 700	n:10000
Cons ci ratio: 3.187220e-01	ci left: 1.252543e-02	ci right 1.736316e-02	k: 148	n:10000
KS ci ratio: 3.777764e-02	ci left: 5.085527e-01	ci right 5.282366e-01	k: 5184	n:10000
NCKAP5   10000 perm   3 sec   (3610 perm/sec)   p_kst 5.184000e-01   p_cons 1.480000e-02   p_joint 7.000000e-02

Joint ci ratio: 1.043980e-01	ci left: 6.240220e-02	ci right 6.932467e-02	k: 1316	n:20000
Cons ci ratio: 2.101441e-01	ci left: 1.530131e-02	ci right 1.894102e-02	k: 341	n:20000
KS ci ratio: 2.679777e-02	ci left: 5.098974e-01	ci right 5.237977e-01	k: 10337	n:20000
NCKAP5   20000 perm   8 sec   (2455 perm/sec)   p_kst 5.168500e-01   p_cons 1.705000e-02   p_joint 6.580000e-02

Joint ci ratio: 9.375085e-02	ci left: 5.247933e-02	ci right 5.767393e-02	k: 1651	n:30000
Cons ci ratio: 1.797802e-01	ci left: 1.419625e-02	ci right 1.703201e-02	k: 467	n:30000
KS ci ratio: 2.153364e-02	ci left: 5.191635e-01	ci right 5.304983e-01	k: 15745	n:30000
NCKAP5   30000 perm   11 sec   (2609 perm/sec)   p_kst 5.248333e-01   p_cons 1.556667e-02   p_joint 5.503333e-02

Joint ci ratio: 8.872840e-02	ci left: 4.445698e-02	ci right 4.860917e-02	k: 1860	n:40000
Cons ci ratio: 1.555683e-01	ci left: 1.440835e-02	ci right 1.686270e-02	k: 624	n:40000
KS ci ratio: 1.867353e-02	ci left: 5.192667e-01	ci right 5.290798e-01	k: 20967	n:40000
NCKAP5   40000 perm   15 sec   (2700 perm/sec)   p_kst 5.241750e-01   p_cons 1.560000e-02   p_joint 4.650000e-02

Joint ci ratio: 6.654325e-02	ci left: 6.273631e-02	ci right 6.707437e-02	k: 3244	n:50000
Cons ci ratio: 1.423485e-01	ci left: 1.387560e-02	ci right 1.602125e-02	k: 746	n:50000
KS ci ratio: 1.668332e-02	ci left: 5.203514e-01	ci right 5.291257e-01	k: 26237	n:50000
NCKAP5   50000 perm   18 sec   (2729 perm/sec)   p_kst 5.247400e-01   p_cons 1.492000e-02   p_joint 6.488000e-02

Joint ci ratio: 6.261488e-02	ci left: 5.939352e-02	ci right 6.324905e-02	k: 3678	n:60000
Cons ci ratio: 1.299755e-01	ci left: 1.396191e-02	ci right 1.591875e-02	k: 895	n:60000
KS ci ratio: 1.520406e-02	ci left: 5.215783e-01	ci right 5.295859e-01	k: 31535	n:60000
NCKAP5   60000 perm   22 sec   (2741 perm/sec)   p_kst 5.255833e-01   p_cons 1.491667e-02   p_joint 6.130000e-02

Joint ci ratio: 4.582481e-02	ci left: 9.246994e-02	ci right 9.682087e-02	k: 6624	n:70000
Cons ci ratio: 1.105110e-01	ci left: 1.668049e-02	ci right 1.864550e-02	k: 1235	n:70000
KS ci ratio: 1.408225e-02	ci left: 5.216641e-01	ci right 5.290767e-01	k: 36776	n:70000
NCKAP5   70000 perm   25 sec   (2756 perm/sec)   p_kst 5.253714e-01   p_cons 1.764286e-02   p_joint 9.462857e-02

Joint ci ratio: 4.574042e-02	ci left: 8.216091e-02	ci right 8.601931e-02	k: 6726	n:80000
Cons ci ratio: 1.033205e-01	ci left: 1.676101e-02	ci right 1.859921e-02	k: 1413	n:80000
KS ci ratio: 1.317796e-02	ci left: 5.217075e-01	ci right 5.286406e-01	k: 42014	n:80000
NCKAP5   80000 perm   29 sec   (2745 perm/sec)   p_kst 5.251750e-01   p_cons 1.766250e-02   p_joint 8.407500e-02

Joint ci ratio: 4.436462e-02	ci left: 7.804861e-02	ci right 8.160075e-02	k: 7183	n:90000
Cons ci ratio: 9.746612e-02	ci left: 1.679433e-02	ci right 1.852585e-02	k: 1588	n:90000
KS ci ratio: 1.241762e-02	ci left: 5.221757e-01	ci right 5.287115e-01	k: 47290	n:90000
NCKAP5   90000 perm   33 sec   (2740 perm/sec)   p_kst 5.254444e-01   p_cons 1.764444e-02   p_joint 7.981111e-02

Outputting figure to mutsig2_images.part000000000112/NCKAP5.25_5802_90000_0.52544_0.017644_0.079811.png
                gene_name: NCKAP5
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.082 

Current progress: 2 percent done.
NAV3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.257621e-02	ci left: 1.762516e-01	ci right 1.915330e-01	k: 1838	n:10000
Cons ci ratio: 8.036185e-02	ci left: 1.844192e-01	ci right 1.999605e-01	k: 1921	n:10000
KS ci ratio: 8.951618e-02	ci left: 1.536497e-01	ci right 1.681484e-01	k: 1608	n:10000
NAV3   10000 perm   3 sec   (3491 perm/sec)   p_kst 1.608000e-01   p_cons 1.921000e-01   p_joint 1.838000e-01

Outputting figure to mutsig2_images.part000000000112/NAV3.23_7248_10000_0.1608_0.1921_0.1838.png
                gene_name: NAV3
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 4 percent done.
NBEA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.777764e-02	ci left: 5.085527e-01	ci right 5.282366e-01	k: 5184	n:10000
Cons ci ratio: 1.274890e-02	ci left: 8.984685e-01	ci right 9.100947e-01	k: 9044	n:10000
KS ci ratio: 5.685557e-02	ci left: 3.129444e-01	ci right 3.313594e-01	k: 3221	n:10000
NBEA   10000 perm   3 sec   (3194 perm/sec)   p_kst 3.221000e-01   p_cons 9.044000e-01   p_joint 5.184000e-01

Outputting figure to mutsig2_images.part000000000112/NBEA.23_9073_10000_0.3221_0.9044_0.5184.png
                gene_name: NBEA
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 6 percent done.
NAV2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.059551e-02	ci left: 1.835333e-01	ci right 1.990470e-01	k: 1912	n:10000
Cons ci ratio: 6.249646e-03	ci left: 9.720660e-01	ci right 9.782530e-01	k: 9753	n:10000
KS ci ratio: 1.168825e-01	ci left: 9.516088e-02	ci right 1.070726e-01	k: 1010	n:10000
NAV2   10000 perm   3 sec   (3735 perm/sec)   p_kst 1.010000e-01   p_cons 9.753000e-01   p_joint 1.912000e-01

Joint ci ratio: 5.460164e-02	ci left: 1.992748e-01	ci right 2.105111e-01	k: 4097	n:20000
Cons ci ratio: 4.456139e-03	ci left: 9.725847e-01	ci right 9.769758e-01	k: 19497	n:20000
KS ci ratio: 8.262725e-02	ci left: 9.695524e-02	ci right 1.053611e-01	k: 2022	n:20000
NAV2   20000 perm   6 sec   (3442 perm/sec)   p_kst 1.011000e-01   p_cons 9.748500e-01   p_joint 2.048500e-01

Outputting figure to mutsig2_images.part000000000112/NAV2.17_7560_20000_0.1011_0.97485_0.20485.png
                gene_name: NAV2
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 8 percent done.
NCAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.771718e-02	ci left: 5.093530e-01	ci right 5.290358e-01	k: 5192	n:10000
Cons ci ratio: 6.106854e-02	ci left: 2.828028e-01	ci right 3.007187e-01	k: 2917	n:10000
KS ci ratio: 4.065557e-02	ci left: 4.718633e-01	ci right 4.915474e-01	k: 4817	n:10000
NCAM2   10000 perm   2 sec   (4300 perm/sec)   p_kst 4.817000e-01   p_cons 2.917000e-01   p_joint 5.192000e-01

Outputting figure to mutsig2_images.part000000000112/NCAM2.16_2586_10000_0.4817_0.2917_0.5192.png
                gene_name: NCAM2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 10 percent done.
NCOA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.160103e-01	ci left: 6.974044e-03	ci right 1.072050e-02	k: 87	n:10000
Cons ci ratio: 1.754076e-02	ci left: 8.257465e-01	ci right 8.404589e-01	k: 8332	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
NCOA6   10000 perm   3 sec   (3625 perm/sec)   p_kst 1.000000e-04   p_cons 8.332000e-01   p_joint 8.700000e-03

Joint ci ratio: 4.930829e-01	ci left: 2.377553e-03	ci right 3.972323e-03	k: 62	n:20000
Cons ci ratio: 1.236693e-02	ci left: 8.287699e-01	ci right 8.391329e-01	k: 16680	n:20000
KS ci ratio: 2.262987e+00	ci left: 1.211069e-05	ci right 3.611872e-04	k: 2	n:20000
NCOA6   20000 perm   6 sec   (3307 perm/sec)   p_kst 1.000000e-04   p_cons 8.340000e-01   p_joint 3.100000e-03

Joint ci ratio: 4.080544e-01	ci left: 2.442933e-03	ci right 3.722974e-03	k: 91	n:30000
Cons ci ratio: 1.004144e-02	ci left: 8.312895e-01	ci right 8.397121e-01	k: 25066	n:30000
KS ci ratio: 1.752902e+00	ci left: 3.633000e-05	ci right 3.413508e-04	k: 4	n:30000
NCOA6   30000 perm   9 sec   (3196 perm/sec)   p_kst 1.333333e-04   p_cons 8.355333e-01   p_joint 3.033333e-03

Joint ci ratio: 4.583767e-01	ci left: 1.408647e-03	ci right 2.266273e-03	k: 72	n:40000
Cons ci ratio: 8.689221e-03	ci left: 8.320823e-01	ci right 8.393689e-01	k: 33430	n:40000
KS ci ratio: 1.600193e+00	ci left: 4.058837e-05	ci right 2.916840e-04	k: 5	n:40000
NCOA6   40000 perm   13 sec   (3150 perm/sec)   p_kst 1.250000e-04   p_cons 8.357500e-01   p_joint 1.800000e-03

Joint ci ratio: 4.463769e-01	ci left: 1.197768e-03	ci right 1.902143e-03	k: 76	n:50000
Cons ci ratio: 7.799278e-03	ci left: 8.314954e-01	ci right 8.380257e-01	k: 41739	n:50000
KS ci ratio: 1.385805e+00	ci left: 5.628905e-05	ci right 2.884321e-04	k: 7	n:50000
NCOA6   50000 perm   16 sec   (3099 perm/sec)   p_kst 1.400000e-04   p_cons 8.347800e-01   p_joint 1.520000e-03

Joint ci ratio: 4.061665e-01	ci left: 1.236257e-03	ci right 1.880171e-03	k: 92	n:60000
Cons ci ratio: 7.101553e-03	ci left: 8.324923e-01	ci right 8.384419e-01	k: 50129	n:60000
KS ci ratio: 1.181806e+00	ci left: 7.992595e-05	ci right 3.064845e-04	k: 10	n:60000
NCOA6   60000 perm   20 sec   (3041 perm/sec)   p_kst 1.666667e-04   p_cons 8.354833e-01   p_joint 1.533333e-03

Joint ci ratio: 4.040427e-01	ci left: 1.072458e-03	ci right 1.627346e-03	k: 93	n:70000
Cons ci ratio: 6.561702e-03	ci left: 8.332647e-01	ci right 8.387645e-01	k: 58522	n:70000
KS ci ratio: 1.181823e+00	ci left: 6.850761e-05	ci right 2.627036e-04	k: 10	n:70000
NCOA6   70000 perm   23 sec   (2995 perm/sec)   p_kst 1.428571e-04   p_cons 8.360286e-01   p_joint 1.328571e-03

Joint ci ratio: 3.898058e-01	ci left: 1.017162e-03	ci right 1.520129e-03	k: 100	n:80000
Cons ci ratio: 6.127343e-03	ci left: 8.339189e-01	ci right 8.390567e-01	k: 66920	n:80000
KS ci ratio: 1.181836e+00	ci left: 5.994393e-05	ci right 2.298674e-04	k: 10	n:80000
NCOA6   80000 perm   27 sec   (2954 perm/sec)   p_kst 1.250000e-04   p_cons 8.365000e-01   p_joint 1.250000e-03

Joint ci ratio: 4.176667e-01	ci left: 7.743306e-04	ci right 1.192245e-03	k: 87	n:90000
Cons ci ratio: 5.946896e-03	ci left: 8.259318e-01	ci right 8.308692e-01	k: 74557	n:90000
KS ci ratio: 1.181846e+00	ci left: 5.328334e-05	ci right 2.043278e-04	k: 10	n:90000
NCOA6   90000 perm   31 sec   (2918 perm/sec)   p_kst 1.111111e-04   p_cons 8.284111e-01   p_joint 9.666667e-04

Joint ci ratio: 3.978206e-01	ci left: 7.776701e-04	ci right 1.172200e-03	k: 96	n:100000
Cons ci ratio: 5.640547e-03	ci left: 8.261190e-01	ci right 8.308019e-01	k: 82847	n:100000
KS ci ratio: 1.087136e+00	ci left: 6.200724e-05	ci right 2.096065e-04	k: 12	n:100000
NCOA6   100000 perm   35 sec   (2886 perm/sec)   p_kst 1.200000e-04   p_cons 8.284700e-01   p_joint 9.600000e-04

Joint ci ratio: 3.958016e-01	ci left: 7.151515e-04	ci right 1.075639e-03	k: 97	n:110000
Cons ci ratio: 5.379027e-03	ci left: 8.261770e-01	ci right 8.306420e-01	k: 91126	n:110000
KS ci ratio: 1.012066e+00	ci left: 6.958288e-05	ci right 2.135328e-04	k: 14	n:110000
NCOA6   110000 perm   39 sec   (2853 perm/sec)   p_kst 1.272727e-04   p_cons 8.284182e-01   p_joint 8.818182e-04

Joint ci ratio: 3.879712e-01	ci left: 6.856020e-04	ci right 1.022609e-03	k: 101	n:120000
Cons ci ratio: 5.420322e-03	ci left: 8.111673e-01	ci right 8.155843e-01	k: 97606	n:120000
KS ci ratio: 1.012072e+00	ci left: 6.378417e-05	ci right 1.957391e-04	k: 14	n:120000
NCOA6   120000 perm   42 sec   (2829 perm/sec)   p_kst 1.166667e-04   p_cons 8.133833e-01   p_joint 8.416667e-04

Joint ci ratio: 3.770440e-01	ci left: 6.745789e-04	ci right 9.945189e-04	k: 107	n:130000
Cons ci ratio: 5.210556e-03	ci left: 8.110860e-01	ci right 8.153308e-01	k: 105718	n:130000
KS ci ratio: 9.799359e-01	ci left: 6.458129e-05	ci right 1.903022e-04	k: 15	n:130000
NCOA6   130000 perm   46 sec   (2800 perm/sec)   p_kst 1.153846e-04   p_cons 8.132154e-01   p_joint 8.230769e-04

Joint ci ratio: 3.702557e-01	ci left: 6.522816e-04	ci right 9.547272e-04	k: 111	n:140000
Cons ci ratio: 5.029413e-03	ci left: 8.106534e-01	ci right 8.147479e-01	k: 113779	n:140000
KS ci ratio: 8.764729e-01	ci left: 8.171078e-05	ci right 2.119266e-04	k: 19	n:140000
NCOA6   140000 perm   51 sec   (2772 perm/sec)   p_kst 1.357143e-04   p_cons 8.127071e-01   p_joint 7.928571e-04

Joint ci ratio: 3.670009e-01	ci left: 6.208924e-04	ci right 9.056454e-04	k: 113	n:150000
Cons ci ratio: 4.861328e-03	ci left: 8.105690e-01	ci right 8.145256e-01	k: 121883	n:150000
KS ci ratio: 8.764773e-01	ci left: 7.626328e-05	ci right 1.977987e-04	k: 19	n:150000
NCOA6   150000 perm   55 sec   (2745 perm/sec)   p_kst 1.266667e-04   p_cons 8.125533e-01   p_joint 7.533333e-04

Joint ci ratio: 3.622705e-01	ci left: 5.991174e-04	ci right 8.695056e-04	k: 116	n:160000
Cons ci ratio: 4.706818e-03	ci left: 8.106415e-01	ci right 8.144722e-01	k: 130010	n:160000
KS ci ratio: 8.553553e-01	ci left: 7.635487e-05	ci right 1.930458e-04	k: 20	n:160000
NCOA6   160000 perm   59 sec   (2720 perm/sec)   p_kst 1.250000e-04   p_cons 8.125625e-01   p_joint 7.250000e-04

Joint ci ratio: 3.958645e-01	ci left: 4.627322e-04	ci right 6.960256e-04	k: 97	n:170000
Cons ci ratio: 4.565192e-03	ci left: 8.107721e-01	ci right 8.144878e-01	k: 138148	n:170000
KS ci ratio: 8.356903e-01	ci left: 7.646823e-05	ci right 1.888217e-04	k: 21	n:170000
NCOA6   170000 perm   63 sec   (2695 perm/sec)   p_kst 1.235294e-04   p_cons 8.126353e-01   p_joint 5.705882e-04

Joint ci ratio: 4.063789e-01	ci left: 4.120470e-04	ci right 6.267961e-04	k: 92	n:180000
Cons ci ratio: 4.296229e-03	ci left: 8.204536e-01	ci right 8.239916e-01	k: 148001	n:180000
KS ci ratio: 7.687176e-01	ci left: 8.988352e-05	ci right 2.050206e-04	k: 25	n:180000
NCOA6   180000 perm   67 sec   (2668 perm/sec)   p_kst 1.388889e-04   p_cons 8.222278e-01   p_joint 5.111111e-04

Joint ci ratio: 2.320259e-01	ci left: 1.326041e-03	ci right 1.678923e-03	k: 284	n:190000
Cons ci ratio: 4.185651e-03	ci left: 8.202197e-01	ci right 8.236652e-01	k: 156170	n:190000
KS ci ratio: 7.407538e-01	ci left: 9.365029e-05	ci right 2.067490e-04	k: 27	n:190000
NCOA6   190000 perm   72 sec   (2641 perm/sec)   p_kst 1.421053e-04   p_cons 8.219474e-01   p_joint 1.494737e-03

Joint ci ratio: 2.336827e-01	ci left: 1.240899e-03	ci right 1.573821e-03	k: 280	n:200000
Cons ci ratio: 4.084299e-03	ci left: 8.199300e-01	ci right 8.232907e-01	k: 164323	n:200000
KS ci ratio: 6.929075e-01	ci left: 1.053173e-04	ci right 2.200030e-04	k: 31	n:200000
NCOA6   200000 perm   77 sec   (2614 perm/sec)   p_kst 1.550000e-04   p_cons 8.216150e-01   p_joint 1.400000e-03

Joint ci ratio: 2.397470e-01	ci left: 1.119087e-03	ci right 1.428277e-03	k: 266	n:210000
Cons ci ratio: 3.988143e-03	ci left: 8.198028e-01	ci right 8.230835e-01	k: 172504	n:210000
KS ci ratio: 6.722184e-01	ci left: 1.081723e-04	ci right 2.206800e-04	k: 33	n:210000
NCOA6   210000 perm   81 sec   (2587 perm/sec)   p_kst 1.571429e-04   p_cons 8.214476e-01   p_joint 1.266667e-03

Joint ci ratio: 2.448569e-01	ci left: 1.021248e-03	ci right 1.310335e-03	k: 255	n:220000
Cons ci ratio: 3.895995e-03	ci left: 8.198751e-01	ci right 8.230801e-01	k: 180726	n:220000
KS ci ratio: 6.722210e-01	ci left: 1.032553e-04	ci right 2.106494e-04	k: 33	n:220000
NCOA6   220000 perm   86 sec   (2562 perm/sec)   p_kst 1.500000e-04   p_cons 8.214818e-01   p_joint 1.159091e-03

Joint ci ratio: 2.463122e-01	ci left: 9.646013e-04	ci right 1.239525e-03	k: 252	n:230000
Cons ci ratio: 3.814357e-03	ci left: 8.196016e-01	ci right 8.227381e-01	k: 188870	n:230000
KS ci ratio: 6.722233e-01	ci left: 9.876583e-05	ci right 2.014910e-04	k: 33	n:230000
NCOA6   230000 perm   91 sec   (2537 perm/sec)   p_kst 1.434783e-04   p_cons 8.211739e-01   p_joint 1.095652e-03

Joint ci ratio: 2.508242e-01	ci left: 8.892408e-04	ci right 1.148053e-03	k: 243	n:240000
Cons ci ratio: 3.737103e-03	ci left: 8.193935e-01	ci right 8.224655e-01	k: 197024	n:240000
KS ci ratio: 6.443930e-01	ci left: 1.050603e-04	ci right 2.076572e-04	k: 36	n:240000
NCOA6   240000 perm   96 sec   (2511 perm/sec)   p_kst 1.500000e-04   p_cons 8.209333e-01   p_joint 1.012500e-03

Joint ci ratio: 2.458372e-01	ci left: 8.911823e-04	ci right 1.144615e-03	k: 253	n:250000
Cons ci ratio: 3.661166e-03	ci left: 8.194595e-01	ci right 8.224691e-01	k: 205242	n:250000
KS ci ratio: 6.276521e-01	ci left: 1.075664e-04	ci right 2.086260e-04	k: 38	n:250000
NCOA6   250000 perm   101 sec   (2486 perm/sec)   p_kst 1.520000e-04   p_cons 8.209680e-01   p_joint 1.012000e-03

Joint ci ratio: 2.406805e-01	ci left: 8.966355e-04	ci right 1.145473e-03	k: 264	n:260000
Cons ci ratio: 3.586859e-03	ci left: 8.197525e-01	ci right 8.227019e-01	k: 213520	n:260000
KS ci ratio: 6.197576e-01	ci left: 1.066668e-04	ci right 2.050493e-04	k: 39	n:260000
NCOA6   260000 perm   106 sec   (2459 perm/sec)   p_kst 1.500000e-04   p_cons 8.212308e-01   p_joint 1.015385e-03

Joint ci ratio: 2.358352e-01	ci left: 9.017360e-04	ci right 1.146215e-03	k: 275	n:270000
Cons ci ratio: 3.520622e-03	ci left: 8.197122e-01	ci right 8.226068e-01	k: 221714	n:270000
KS ci ratio: 6.121535e-01	ci left: 1.058413e-04	ci right 2.017303e-04	k: 40	n:270000
NCOA6   270000 perm   111 sec   (2436 perm/sec)   p_kst 1.481481e-04   p_cons 8.211630e-01   p_joint 1.018519e-03

Joint ci ratio: 2.173159e-01	ci left: 1.034623e-03	ci right 1.290168e-03	k: 324	n:280000
Cons ci ratio: 3.568252e-03	ci left: 8.102326e-01	ci right 8.131324e-01	k: 227272	n:280000
KS ci ratio: 6.121552e-01	ci left: 1.020611e-04	ci right 1.945259e-04	k: 40	n:280000
NCOA6   280000 perm   116 sec   (2409 perm/sec)   p_kst 1.428571e-04   p_cons 8.116857e-01   p_joint 1.157143e-03

Joint ci ratio: 2.156657e-01	ci left: 1.015252e-03	ci right 1.263856e-03	k: 329	n:290000
Cons ci ratio: 3.509784e-03	ci left: 8.099437e-01	ci right 8.127949e-01	k: 235298	n:290000
KS ci ratio: 6.048243e-01	ci left: 1.014581e-04	ci right 1.917922e-04	k: 41	n:290000
NCOA6   290000 perm   121 sec   (2387 perm/sec)   p_kst 1.413793e-04   p_cons 8.113724e-01   p_joint 1.134483e-03

Joint ci ratio: 2.285066e-01	ci left: 8.680717e-04	ci right 1.095079e-03	k: 293	n:300000
Cons ci ratio: 3.450518e-03	ci left: 8.099922e-01	ci right 8.127952e-01	k: 243419	n:300000
KS ci ratio: 5.977506e-01	ci left: 1.009015e-04	ci right 1.892347e-04	k: 42	n:300000
NCOA6   300000 perm   127 sec   (2366 perm/sec)   p_kst 1.400000e-04   p_cons 8.113967e-01   p_joint 9.766667e-04

Joint ci ratio: 2.247168e-01	ci left: 8.704965e-04	ci right 1.093840e-03	k: 303	n:310000
Cons ci ratio: 3.394013e-03	ci left: 8.100508e-01	ci right 8.128079e-01	k: 251544	n:310000
KS ci ratio: 5.909193e-01	ci left: 1.003866e-04	ci right 1.868365e-04	k: 43	n:310000
NCOA6   310000 perm   132 sec   (2345 perm/sec)   p_kst 1.387097e-04   p_cons 8.114323e-01   p_joint 9.774194e-04

Joint ci ratio: 2.197131e-01	ci left: 8.846094e-04	ci right 1.105838e-03	k: 317	n:320000
Cons ci ratio: 3.339344e-03	ci left: 8.101844e-01	ci right 8.128975e-01	k: 259694	n:320000
KS ci ratio: 5.779300e-01	ci left: 1.025746e-04	ci right 1.881628e-04	k: 45	n:320000
NCOA6   320000 perm   138 sec   (2325 perm/sec)   p_kst 1.406250e-04   p_cons 8.115438e-01   p_joint 9.906250e-04

Joint ci ratio: 2.458676e-01	ci left: 6.751285e-04	ci right 8.671467e-04	k: 253	n:330000
Cons ci ratio: 3.287493e-03	ci left: 8.102859e-01	ci right 8.129571e-01	k: 267836	n:330000
KS ci ratio: 5.543289e-01	ci left: 1.098519e-04	ci right 1.963002e-04	k: 49	n:330000
NCOA6   330000 perm   143 sec   (2303 perm/sec)   p_kst 1.484848e-04   p_cons 8.116242e-01   p_joint 7.666667e-04

Joint ci ratio: 2.444301e-01	ci left: 6.635528e-04	ci right 8.510076e-04	k: 256	n:340000
Cons ci ratio: 3.238638e-03	ci left: 8.103198e-01	ci right 8.129513e-01	k: 275957	n:340000
KS ci ratio: 5.488678e-01	ci left: 1.091518e-04	ci right 1.938742e-04	k: 50	n:340000
NCOA6   340000 perm   149 sec   (2284 perm/sec)   p_kst 1.470588e-04   p_cons 8.116382e-01   p_joint 7.529412e-04

Joint ci ratio: 2.042364e-01	ci left: 9.440721e-04	ci right 1.161468e-03	k: 367	n:350000
Cons ci ratio: 3.191242e-03	ci left: 8.104151e-01	ci right 8.130083e-01	k: 284100	n:350000
KS ci ratio: 5.435650e-01	ci left: 1.084957e-04	ci right 1.915830e-04	k: 51	n:350000
NCOA6   350000 perm   155 sec   (2265 perm/sec)   p_kst 1.457143e-04   p_cons 8.117143e-01   p_joint 1.048571e-03

Joint ci ratio: 2.239959e-01	ci left: 7.548324e-04	ci right 9.477925e-04	k: 305	n:360000
Cons ci ratio: 2.906713e-03	ci left: 8.335494e-01	ci right 8.359785e-01	k: 300516	n:360000
KS ci ratio: 5.435662e-01	ci left: 1.054819e-04	ci right 1.862614e-04	k: 51	n:360000
NCOA6   360000 perm   160 sec   (2246 perm/sec)   p_kst 1.416667e-04   p_cons 8.347667e-01   p_joint 8.472222e-04

Joint ci ratio: 2.642074e-01	ci left: 5.161098e-04	ci right 6.756642e-04	k: 219	n:370000
Cons ci ratio: 2.868475e-03	ci left: 8.334395e-01	ci right 8.358363e-01	k: 308817	n:370000
KS ci ratio: 5.435673e-01	ci left: 1.026310e-04	ci right 1.812274e-04	k: 51	n:370000
NCOA6   370000 perm   166 sec   (2227 perm/sec)   p_kst 1.378378e-04   p_cons 8.346405e-01   p_joint 5.918919e-04

Joint ci ratio: 2.595301e-01	ci left: 5.221990e-04	ci right 6.803146e-04	k: 227	n:380000
Cons ci ratio: 2.828521e-03	ci left: 8.336471e-01	ci right 8.360110e-01	k: 317236	n:380000
KS ci ratio: 5.334058e-01	ci left: 1.044771e-04	ci right 1.824311e-04	k: 53	n:380000
NCOA6   380000 perm   172 sec   (2209 perm/sec)   p_kst 1.394737e-04   p_cons 8.348316e-01   p_joint 5.973684e-04

Joint ci ratio: 2.678918e-01	ci left: 4.752826e-04	ci right 6.246085e-04	k: 213	n:390000
Cons ci ratio: 2.790187e-03	ci left: 8.338442e-01	ci right 8.361765e-01	k: 325655	n:390000
KS ci ratio: 5.285347e-01	ci left: 1.040182e-04	ci right 1.806585e-04	k: 54	n:390000
NCOA6   390000 perm   178 sec   (2188 perm/sec)   p_kst 1.384615e-04   p_cons 8.350128e-01   p_joint 5.461538e-04

Joint ci ratio: 2.624291e-01	ci left: 4.844054e-04	ci right 6.329849e-04	k: 222	n:400000
Cons ci ratio: 2.755017e-03	ci left: 8.338661e-01	ci right 8.361690e-01	k: 334008	n:400000
KS ci ratio: 5.237947e-01	ci left: 1.035854e-04	ci right 1.789714e-04	k: 55	n:400000
NCOA6   400000 perm   185 sec   (2167 perm/sec)   p_kst 1.375000e-04   p_cons 8.350200e-01   p_joint 5.550000e-04

Joint ci ratio: 2.601072e-01	ci left: 4.817078e-04	ci right 6.279400e-04	k: 226	n:410000
Cons ci ratio: 2.722806e-03	ci left: 8.337184e-01	ci right 8.359939e-01	k: 342292	n:410000
KS ci ratio: 5.191800e-01	ci left: 1.031767e-04	ci right 1.773638e-04	k: 56	n:410000
NCOA6   410000 perm   191 sec   (2149 perm/sec)   p_kst 1.365854e-04   p_cons 8.348585e-01   p_joint 5.512195e-04

Joint ci ratio: 2.606840e-01	ci left: 4.680125e-04	ci right 6.104537e-04	k: 225	n:420000
Cons ci ratio: 2.690953e-03	ci left: 8.336543e-01	ci right 8.359030e-01	k: 350608	n:420000
KS ci ratio: 5.103041e-01	ci left: 1.048631e-04	ci right 1.785165e-04	k: 58	n:420000
NCOA6   420000 perm   197 sec   (2131 perm/sec)   p_kst 1.380952e-04   p_cons 8.347810e-01   p_joint 5.357143e-04

Joint ci ratio: 2.561884e-01	ci left: 4.745284e-04	ci right 6.160639e-04	k: 233	n:430000
Cons ci ratio: 2.658197e-03	ci left: 8.338009e-01	ci right 8.360225e-01	k: 359013	n:430000
KS ci ratio: 4.978040e-01	ci left: 1.085137e-04	ci right 1.822220e-04	k: 61	n:430000
NCOA6   430000 perm   203 sec   (2114 perm/sec)   p_kst 1.418605e-04   p_cons 8.349140e-01   p_joint 5.418605e-04

Joint ci ratio: 2.534946e-01	ci left: 4.743815e-04	ci right 6.141504e-04	k: 238	n:440000
Cons ci ratio: 2.626844e-03	ci left: 8.339159e-01	ci right 8.361115e-01	k: 367407	n:440000
KS ci ratio: 4.899638e-01	ci left: 1.100265e-04	ci right 1.831881e-04	k: 63	n:440000
NCOA6   440000 perm   210 sec   (2097 perm/sec)   p_kst 1.431818e-04   p_cons 8.350159e-01   p_joint 5.409091e-04

Joint ci ratio: 2.503712e-01	ci left: 4.763313e-04	ci right 6.146759e-04	k: 244	n:450000
Cons ci ratio: 2.598586e-03	ci left: 8.338120e-01	ci right 8.359837e-01	k: 375705	n:450000
KS ci ratio: 4.861805e-01	ci left: 1.095301e-04	ci right 1.816110e-04	k: 64	n:450000
NCOA6   450000 perm   216 sec   (2079 perm/sec)   p_kst 1.422222e-04   p_cons 8.349000e-01   p_joint 5.422222e-04

Joint ci ratio: 2.483524e-01	ci left: 4.741285e-04	ci right 6.105514e-04	k: 248	n:460000
Cons ci ratio: 2.569577e-03	ci left: 8.338893e-01	ci right 8.360369e-01	k: 384084	n:460000
KS ci ratio: 4.824835e-01	ci left: 1.090574e-04	ci right 1.801005e-04	k: 65	n:460000
NCOA6   460000 perm   223 sec   (2063 perm/sec)   p_kst 1.413043e-04   p_cons 8.349652e-01   p_joint 5.391304e-04

Joint ci ratio: 2.402823e-01	ci left: 4.979979e-04	ci right 6.359396e-04	k: 265	n:470000
Cons ci ratio: 2.541164e-03	ci left: 8.340018e-01	ci right 8.361260e-01	k: 392481	n:470000
KS ci ratio: 4.824843e-01	ci left: 1.067369e-04	ci right 1.762686e-04	k: 65	n:470000
NCOA6   470000 perm   230 sec   (2046 perm/sec)   p_kst 1.382979e-04   p_cons 8.350660e-01   p_joint 5.638298e-04

Joint ci ratio: 2.393850e-01	ci left: 4.915390e-04	ci right 6.271078e-04	k: 267	n:480000
Cons ci ratio: 2.514567e-03	ci left: 8.340116e-01	ci right 8.361135e-01	k: 400831	n:480000
KS ci ratio: 4.824850e-01	ci left: 1.045132e-04	ci right 1.725964e-04	k: 65	n:480000
NCOA6   480000 perm   236 sec   (2030 perm/sec)   p_kst 1.354167e-04   p_cons 8.350646e-01   p_joint 5.562500e-04

Joint ci ratio: 2.354632e-01	ci left: 4.987827e-04	ci right 6.337672e-04	k: 276	n:490000
Cons ci ratio: 2.488806e-03	ci left: 8.340191e-01	ci right 8.360994e-01	k: 409180	n:490000
KS ci ratio: 4.788710e-01	ci left: 1.041737e-04	ci right 1.713605e-04	k: 66	n:490000
NCOA6   490000 perm   243 sec   (2014 perm/sec)   p_kst 1.346939e-04   p_cons 8.350612e-01   p_joint 5.632653e-04

Joint ci ratio: 2.337816e-01	ci left: 4.963367e-04	ci right 6.295614e-04	k: 280	n:500000
Cons ci ratio: 2.462730e-03	ci left: 8.341487e-01	ci right 8.362074e-01	k: 417590	n:500000
KS ci ratio: 4.684963e-01	ci left: 1.073738e-04	ci right 1.746446e-04	k: 69	n:500000
NCOA6   500000 perm   250 sec   (1998 perm/sec)   p_kst 1.380000e-04   p_cons 8.351800e-01   p_joint 5.600000e-04

Joint ci ratio: 2.321356e-01	ci left: 4.939900e-04	ci right 6.255172e-04	k: 284	n:510000
Cons ci ratio: 2.438098e-03	ci left: 8.342005e-01	ci right 8.362388e-01	k: 425963	n:510000
KS ci ratio: 4.684970e-01	ci left: 1.052684e-04	ci right 1.712203e-04	k: 69	n:510000
NCOA6   510000 perm   257 sec   (1983 perm/sec)   p_kst 1.352941e-04   p_cons 8.352216e-01   p_joint 5.568627e-04

Joint ci ratio: 2.380608e-01	ci left: 4.591516e-04	ci right 5.849837e-04	k: 270	n:520000
Cons ci ratio: 2.414747e-03	ci left: 8.341869e-01	ci right 8.362055e-01	k: 434303	n:520000
KS ci ratio: 4.619440e-01	ci left: 1.066392e-04	ci right 1.722216e-04	k: 71	n:520000
NCOA6   520000 perm   264 sec   (1968 perm/sec)   p_kst 1.365385e-04   p_cons 8.351981e-01   p_joint 5.192308e-04

Joint ci ratio: 2.376237e-01	ci left: 4.522625e-04	ci right 5.759456e-04	k: 271	n:530000
Cons ci ratio: 2.391792e-03	ci left: 8.342041e-01	ci right 8.362036e-01	k: 442659	n:530000
KS ci ratio: 4.619446e-01	ci left: 1.046271e-04	ci right 1.689722e-04	k: 71	n:530000
NCOA6   530000 perm   271 sec   (1954 perm/sec)   p_kst 1.339623e-04   p_cons 8.352057e-01   p_joint 5.113208e-04

Joint ci ratio: 2.425830e-01	ci left: 4.247414e-04	ci right 5.436876e-04	k: 260	n:540000
Cons ci ratio: 2.369941e-03	ci left: 8.341669e-01	ci right 8.361480e-01	k: 450986	n:540000
KS ci ratio: 4.587699e-01	ci left: 1.043265e-04	ci right 1.679084e-04	k: 72	n:540000
NCOA6   540000 perm   279 sec   (1939 perm/sec)   p_kst 1.333333e-04   p_cons 8.351593e-01   p_joint 4.814815e-04

Joint ci ratio: 2.402923e-01	ci left: 4.255599e-04	ci right 5.434422e-04	k: 265	n:550000
Cons ci ratio: 2.348477e-03	ci left: 8.341549e-01	ci right 8.361180e-01	k: 459326	n:550000
KS ci ratio: 4.587704e-01	ci left: 1.024297e-04	ci right 1.648555e-04	k: 72	n:550000
NCOA6   550000 perm   286 sec   (1925 perm/sec)   p_kst 1.309091e-04   p_cons 8.351382e-01   p_joint 4.818182e-04

Joint ci ratio: 2.449438e-01	ci left: 4.011882e-04	ci right 5.147982e-04	k: 255	n:560000
Cons ci ratio: 2.327661e-03	ci left: 8.341344e-01	ci right 8.360800e-01	k: 467661	n:560000
KS ci ratio: 4.526119e-01	ci left: 1.037619e-04	ci right 1.658905e-04	k: 74	n:560000
NCOA6   560000 perm   293 sec   (1910 perm/sec)   p_kst 1.321429e-04   p_cons 8.351089e-01   p_joint 4.553571e-04

Joint ci ratio: 2.439931e-01	ci left: 3.974436e-04	ci right 5.094901e-04	k: 257	n:570000
Cons ci ratio: 2.307727e-03	ci left: 8.340743e-01	ci right 8.360030e-01	k: 475973	n:570000
KS ci ratio: 4.466949e-01	ci left: 1.050529e-04	ci right 1.668837e-04	k: 76	n:570000
NCOA6   570000 perm   301 sec   (1895 perm/sec)   p_kst 1.333333e-04   p_cons 8.350404e-01   p_joint 4.508772e-04

Joint ci ratio: 2.407485e-01	ci left: 4.019273e-04	ci right 5.135061e-04	k: 264	n:580000
Cons ci ratio: 2.286764e-03	ci left: 8.342012e-01	ci right 8.361127e-01	k: 484392	n:580000
KS ci ratio: 4.410040e-01	ci left: 1.063044e-04	ci right 1.678378e-04	k: 78	n:580000
NCOA6   580000 perm   308 sec   (1882 perm/sec)   p_kst 1.344828e-04   p_cons 8.351586e-01   p_joint 4.551724e-04

Joint ci ratio: 2.376299e-01	ci left: 4.062685e-04	ci right 5.173766e-04	k: 271	n:590000
Cons ci ratio: 2.266696e-03	ci left: 8.342831e-01	ci right 8.361780e-01	k: 492787	n:590000
KS ci ratio: 4.328611e-01	ci left: 1.090280e-04	ci right 1.706338e-04	k: 81	n:590000
NCOA6   590000 perm   316 sec   (1867 perm/sec)   p_kst 1.372881e-04   p_cons 8.352322e-01   p_joint 4.593220e-04

Joint ci ratio: 2.393984e-01	ci left: 3.932288e-04	ci right 5.016898e-04	k: 267	n:600000
Cons ci ratio: 2.247895e-03	ci left: 8.342705e-01	ci right 8.361496e-01	k: 501127	n:600000
KS ci ratio: 4.328616e-01	ci left: 1.072109e-04	ci right 1.677899e-04	k: 81	n:600000
NCOA6   600000 perm   324 sec   (1853 perm/sec)   p_kst 1.350000e-04   p_cons 8.352117e-01   p_joint 4.450000e-04

Joint ci ratio: 2.371959e-01	ci left: 3.944898e-04	ci right 5.021505e-04	k: 272	n:610000
Cons ci ratio: 2.229435e-03	ci left: 8.342731e-01	ci right 8.361368e-01	k: 509476	n:610000
KS ci ratio: 4.251537e-01	ci left: 1.098403e-04	ci right 1.704853e-04	k: 84	n:610000
NCOA6   610000 perm   332 sec   (1839 perm/sec)   p_kst 1.377049e-04   p_cons 8.352066e-01   p_joint 4.459016e-04

Joint ci ratio: 2.346313e-01	ci left: 3.972326e-04	ci right 5.042996e-04	k: 278	n:620000
Cons ci ratio: 2.210101e-03	ci left: 8.344407e-01	ci right 8.362885e-01	k: 517927	n:620000
KS ci ratio: 4.202383e-01	ci left: 1.109513e-04	ci right 1.713025e-04	k: 86	n:620000
NCOA6   620000 perm   340 sec   (1825 perm/sec)   p_kst 1.387097e-04   p_cons 8.353661e-01   p_joint 4.483871e-04

Joint ci ratio: 2.329673e-01	ci left: 3.969046e-04	ci right 5.030153e-04	k: 282	n:630000
Cons ci ratio: 2.192928e-03	ci left: 8.343929e-01	ci right 8.362262e-01	k: 526246	n:630000
KS ci ratio: 4.202388e-01	ci left: 1.091901e-04	ci right 1.685835e-04	k: 86	n:630000
NCOA6   630000 perm   348 sec   (1812 perm/sec)   p_kst 1.365079e-04   p_cons 8.353111e-01   p_joint 4.476190e-04

Joint ci ratio: 2.321489e-01	ci left: 3.936458e-04	ci right 4.984625e-04	k: 284	n:640000
Cons ci ratio: 2.176508e-03	ci left: 8.343013e-01	ci right 8.361207e-01	k: 534536	n:640000
KS ci ratio: 4.178443e-01	ci left: 1.088818e-04	ci right 1.676757e-04	k: 87	n:640000
NCOA6   640000 perm   356 sec   (1800 perm/sec)   p_kst 1.359375e-04   p_cons 8.352125e-01   p_joint 4.437500e-04

Joint ci ratio: 2.346337e-01	ci left: 3.788983e-04	ci right 4.810248e-04	k: 278	n:650000
Cons ci ratio: 2.159159e-03	ci left: 8.343775e-01	ci right 8.361825e-01	k: 542933	n:650000
KS ci ratio: 4.131754e-01	ci left: 1.099619e-04	ci right 1.684930e-04	k: 89	n:650000
NCOA6   650000 perm   364 sec   (1787 perm/sec)   p_kst 1.369231e-04   p_cons 8.352815e-01   p_joint 4.276923e-04

Joint ci ratio: 2.363355e-01	ci left: 3.674541e-04	ci right 4.673194e-04	k: 274	n:660000
Cons ci ratio: 2.142643e-03	ci left: 8.343969e-01	ci right 8.361881e-01	k: 551294	n:660000
KS ci ratio: 4.064561e-01	ci left: 1.123726e-04	ci right 1.709516e-04	k: 92	n:660000
NCOA6   660000 perm   372 sec   (1775 perm/sec)   p_kst 1.393939e-04   p_cons 8.352939e-01   p_joint 4.151515e-04

Joint ci ratio: 2.359075e-01	ci left: 3.633739e-04	ci right 4.619253e-04	k: 275	n:670000
Cons ci ratio: 2.126304e-03	ci left: 8.344411e-01	ci right 8.362187e-01	k: 559672	n:670000
KS ci ratio: 4.064565e-01	ci left: 1.106954e-04	ci right 1.684001e-04	k: 92	n:670000
NCOA6   670000 perm   380 sec   (1763 perm/sec)   p_kst 1.373134e-04   p_cons 8.353313e-01   p_joint 4.104478e-04

Joint ci ratio: 2.394047e-01	ci left: 3.469655e-04	ci right 4.426689e-04	k: 267	n:680000
Cons ci ratio: 2.111134e-03	ci left: 8.343794e-01	ci right 8.361442e-01	k: 567979	n:680000
KS ci ratio: 4.021551e-01	ci left: 1.117096e-04	ci right 1.691624e-04	k: 94	n:680000
NCOA6   680000 perm   388 sec   (1751 perm/sec)   p_kst 1.382353e-04   p_cons 8.352632e-01   p_joint 3.926471e-04

Joint ci ratio: 2.363376e-01	ci left: 3.514775e-04	ci right 4.470017e-04	k: 274	n:690000
Cons ci ratio: 2.096151e-03	ci left: 8.343370e-01	ci right 8.360892e-01	k: 576298	n:690000
KS ci ratio: 3.959514e-01	ci left: 1.140021e-04	ci right 1.714927e-04	k: 97	n:690000
NCOA6   690000 perm   397 sec   (1739 perm/sec)   p_kst 1.405797e-04   p_cons 8.352145e-01   p_joint 3.971014e-04

Joint ci ratio: 2.359096e-01	ci left: 3.478004e-04	ci right 4.421290e-04	k: 275	n:700000
Cons ci ratio: 2.081224e-03	ci left: 8.343302e-01	ci right 8.360699e-01	k: 584641	n:700000
KS ci ratio: 3.959518e-01	ci left: 1.123735e-04	ci right 1.690428e-04	k: 97	n:700000
NCOA6   700000 perm   405 sec   (1727 perm/sec)   p_kst 1.385714e-04   p_cons 8.352014e-01   p_joint 3.928571e-04

Joint ci ratio: 2.333861e-01	ci left: 3.508558e-04	ci right 4.448483e-04	k: 281	n:710000
Cons ci ratio: 2.066716e-03	ci left: 8.343096e-01	ci right 8.360370e-01	k: 592974	n:710000
KS ci ratio: 3.900266e-01	ci left: 1.145986e-04	ci right 1.713027e-04	k: 100	n:710000
NCOA6   710000 perm   415 sec   (1712 perm/sec)   p_kst 1.408451e-04   p_cons 8.351746e-01   p_joint 3.957746e-04

Joint ci ratio: 2.313440e-01	ci left: 3.525230e-04	ci right 4.460178e-04	k: 286	n:720000
Cons ci ratio: 2.052736e-03	ci left: 8.342589e-01	ci right 8.359745e-01	k: 601285	n:720000
KS ci ratio: 3.881101e-01	ci left: 1.142600e-04	ci right 1.704476e-04	k: 101	n:720000
NCOA6   720000 perm   423 sec   (1700 perm/sec)   p_kst 1.402778e-04   p_cons 8.351181e-01   p_joint 3.972222e-04

Joint ci ratio: 2.297485e-01	ci left: 3.528569e-04	ci right 4.457033e-04	k: 290	n:730000
Cons ci ratio: 2.038041e-03	ci left: 8.343442e-01	ci right 8.360477e-01	k: 609694	n:730000
KS ci ratio: 3.881105e-01	ci left: 1.126947e-04	ci right 1.681128e-04	k: 101	n:730000
NCOA6   730000 perm   432 sec   (1689 perm/sec)   p_kst 1.383562e-04   p_cons 8.351973e-01   p_joint 3.972603e-04

Joint ci ratio: 2.289633e-01	ci left: 3.506360e-04	ci right 4.425381e-04	k: 292	n:740000
Cons ci ratio: 2.024939e-03	ci left: 8.342525e-01	ci right 8.359449e-01	k: 617974	n:740000
KS ci ratio: 3.862219e-01	ci left: 1.123916e-04	ci right 1.673233e-04	k: 102	n:740000
NCOA6   740000 perm   441 sec   (1678 perm/sec)   p_kst 1.378378e-04   p_cons 8.351000e-01   p_joint 3.945946e-04

Joint ci ratio: 2.297497e-01	ci left: 3.434472e-04	ci right 4.338182e-04	k: 290	n:750000
Cons ci ratio: 2.010965e-03	ci left: 8.343170e-01	ci right 8.359978e-01	k: 626369	n:750000
KS ci ratio: 3.862223e-01	ci left: 1.108931e-04	ci right 1.650923e-04	k: 102	n:750000
NCOA6   750000 perm   450 sec   (1668 perm/sec)   p_kst 1.360000e-04   p_cons 8.351587e-01   p_joint 3.866667e-04

Joint ci ratio: 2.281868e-01	ci left: 3.438895e-04	ci right 4.336746e-04	k: 294	n:760000
Cons ci ratio: 1.997735e-03	ci left: 8.343165e-01	ci right 8.359862e-01	k: 634716	n:760000
KS ci ratio: 3.825261e-01	ci left: 1.118112e-04	ci right 1.658047e-04	k: 104	n:760000
NCOA6   760000 perm   459 sec   (1657 perm/sec)   p_kst 1.368421e-04   p_cons 8.351526e-01   p_joint 3.868421e-04

Joint ci ratio: 2.270354e-01	ci left: 3.430973e-04	ci right 4.321603e-04	k: 297	n:770000
Cons ci ratio: 1.984370e-03	ci left: 8.343707e-01	ci right 8.360293e-01	k: 643105	n:770000
KS ci ratio: 3.807176e-01	ci left: 1.115333e-04	ci right 1.650741e-04	k: 105	n:770000
NCOA6   770000 perm   468 sec   (1647 perm/sec)   p_kst 1.363636e-04   p_cons 8.352013e-01   p_joint 3.857143e-04

Joint ci ratio: 2.262776e-01	ci left: 3.411171e-04	ci right 4.293293e-04	k: 299	n:780000
Cons ci ratio: 1.972168e-03	ci left: 8.342977e-01	ci right 8.359460e-01	k: 651396	n:780000
KS ci ratio: 3.771758e-01	ci left: 1.124232e-04	ci right 1.657650e-04	k: 107	n:780000
NCOA6   780000 perm   477 sec   (1637 perm/sec)   p_kst 1.371795e-04   p_cons 8.351231e-01   p_joint 3.833333e-04

Joint ci ratio: 2.259019e-01	ci left: 3.379933e-04	ci right 4.252323e-04	k: 300	n:790000
Cons ci ratio: 1.960333e-03	ci left: 8.342063e-01	ci right 8.358444e-01	k: 659671	n:790000
KS ci ratio: 3.754418e-01	ci left: 1.121462e-04	ci right 1.650517e-04	k: 108	n:790000
NCOA6   790000 perm   486 sec   (1627 perm/sec)   p_kst 1.367089e-04   p_cons 8.350266e-01   p_joint 3.797468e-04

Joint ci ratio: 2.255279e-01	ci left: 3.349476e-04	ci right 4.212375e-04	k: 301	n:800000
Cons ci ratio: 1.948328e-03	ci left: 8.341710e-01	ci right 8.357991e-01	k: 667989	n:800000
KS ci ratio: 3.754421e-01	ci left: 1.107444e-04	ci right 1.629886e-04	k: 108	n:800000
NCOA6   800000 perm   495 sec   (1616 perm/sec)   p_kst 1.350000e-04   p_cons 8.349863e-01   p_joint 3.762500e-04

Joint ci ratio: 1.761369e-01	ci left: 5.572888e-04	ci right 6.660871e-04	k: 494	n:810000
Cons ci ratio: 1.936722e-03	ci left: 8.341107e-01	ci right 8.357289e-01	k: 676286	n:810000
KS ci ratio: 3.737317e-01	ci left: 1.104955e-04	ci right 1.623267e-04	k: 109	n:810000
NCOA6   810000 perm   504 sec   (1607 perm/sec)   p_kst 1.345679e-04   p_cons 8.349210e-01   p_joint 6.098765e-04

Joint ci ratio: 1.756059e-01	ci left: 5.539900e-04	ci right 6.617836e-04	k: 497	n:820000
Cons ci ratio: 1.924836e-03	ci left: 8.341215e-01	ci right 8.357298e-01	k: 684640	n:820000
KS ci ratio: 3.720445e-01	ci left: 1.102532e-04	ci right 1.616804e-04	k: 110	n:820000
NCOA6   820000 perm   513 sec   (1597 perm/sec)   p_kst 1.341463e-04   p_cons 8.349268e-01   p_joint 6.060976e-04

Joint ci ratio: 1.747311e-01	ci left: 5.530754e-04	ci right 6.600983e-04	k: 502	n:830000
Cons ci ratio: 1.913809e-03	ci left: 8.340391e-01	ci right 8.356380e-01	k: 692917	n:830000
KS ci ratio: 3.720448e-01	ci left: 1.089249e-04	ci right 1.597325e-04	k: 110	n:830000
NCOA6   830000 perm   523 sec   (1587 perm/sec)   p_kst 1.325301e-04   p_cons 8.348398e-01   p_joint 6.048193e-04

Joint ci ratio: 1.738692e-01	ci left: 5.521839e-04	ci right 6.584518e-04	k: 507	n:840000
Cons ci ratio: 1.902477e-03	ci left: 8.340303e-01	ci right 8.356197e-01	k: 701254	n:840000
KS ci ratio: 3.687376e-01	ci left: 1.097875e-04	ci right 1.604325e-04	k: 112	n:840000
NCOA6   840000 perm   533 sec   (1576 perm/sec)   p_kst 1.333333e-04   p_cons 8.348262e-01   p_joint 6.035714e-04

Joint ci ratio: 1.731889e-01	ci left: 5.501890e-04	ci right 6.556155e-04	k: 511	n:850000
Cons ci ratio: 1.891328e-03	ci left: 8.340241e-01	ci right 8.356042e-01	k: 709593	n:850000
KS ci ratio: 3.655169e-01	ci left: 1.106318e-04	ci right 1.611141e-04	k: 114	n:850000
NCOA6   850000 perm   543 sec   (1566 perm/sec)   p_kst 1.341176e-04   p_cons 8.348153e-01   p_joint 6.011765e-04

Joint ci ratio: 1.726840e-01	ci left: 5.471288e-04	ci right 6.516314e-04	k: 514	n:860000
Cons ci ratio: 1.880388e-03	ci left: 8.340158e-01	ci right 8.355866e-01	k: 717930	n:860000
KS ci ratio: 3.655172e-01	ci left: 1.093453e-04	ci right 1.592407e-04	k: 114	n:860000
NCOA6   860000 perm   552 sec   (1557 perm/sec)   p_kst 1.325581e-04   p_cons 8.348023e-01   p_joint 5.976744e-04

Joint ci ratio: 1.715222e-01	ci left: 5.485394e-04	ci right 6.525335e-04	k: 521	n:870000
Cons ci ratio: 1.869869e-03	ci left: 8.339731e-01	ci right 8.355351e-01	k: 726237	n:870000
KS ci ratio: 3.623796e-01	ci left: 1.101771e-04	ci right 1.599185e-04	k: 116	n:870000
NCOA6   870000 perm   562 sec   (1548 perm/sec)   p_kst 1.333333e-04   p_cons 8.347552e-01   p_joint 5.988506e-04

Joint ci ratio: 1.705448e-01	ci left: 5.488323e-04	ci right 6.522281e-04	k: 527	n:880000
Cons ci ratio: 1.858997e-03	ci left: 8.340099e-01	ci right 8.355629e-01	k: 734613	n:880000
KS ci ratio: 3.608409e-01	ci left: 1.099582e-04	ci right 1.593404e-04	k: 117	n:880000
NCOA6   880000 perm   572 sec   (1538 perm/sec)   p_kst 1.329545e-04   p_cons 8.347875e-01   p_joint 5.988636e-04

Joint ci ratio: 1.687951e-01	ci left: 5.545005e-04	ci right 6.577835e-04	k: 538	n:890000
Cons ci ratio: 1.848794e-03	ci left: 8.339739e-01	ci right 8.355183e-01	k: 742925	n:890000
KS ci ratio: 3.578211e-01	ci left: 1.107671e-04	ci right 1.599993e-04	k: 119	n:890000
NCOA6   890000 perm   585 sec   (1522 perm/sec)   p_kst 1.337079e-04   p_cons 8.347472e-01   p_joint 6.044944e-04

Joint ci ratio: 1.678634e-01	ci left: 5.547252e-04	ci right 6.574220e-04	k: 544	n:900000
Cons ci ratio: 1.838349e-03	ci left: 8.340000e-01	ci right 8.355356e-01	k: 751292	n:900000
KS ci ratio: 3.548759e-01	ci left: 1.115596e-04	ci right 1.606419e-04	k: 121	n:900000
NCOA6   900000 perm   603 sec   (1493 perm/sec)   p_kst 1.344444e-04   p_cons 8.347689e-01   p_joint 6.044444e-04

Joint ci ratio: 1.672510e-01	ci left: 5.528406e-04	ci right 6.547774e-04	k: 548	n:910000
Cons ci ratio: 1.827446e-03	ci left: 8.341213e-01	ci right 8.356480e-01	k: 759746	n:910000
KS ci ratio: 3.534304e-01	ci left: 1.113349e-04	ci right 1.600728e-04	k: 122	n:910000
NCOA6   910000 perm   620 sec   (1469 perm/sec)   p_kst 1.340659e-04   p_cons 8.348857e-01   p_joint 6.021978e-04

Joint ci ratio: 1.660454e-01	ci left: 5.551645e-04	ci right 6.567182e-04	k: 556	n:920000
Cons ci ratio: 1.817479e-03	ci left: 8.341267e-01	ci right 8.356451e-01	k: 768096	n:920000
KS ci ratio: 3.534307e-01	ci left: 1.101247e-04	ci right 1.583329e-04	k: 122	n:920000
NCOA6   920000 perm   630 sec   (1461 perm/sec)   p_kst 1.326087e-04   p_cons 8.348870e-01   p_joint 6.043478e-04

Joint ci ratio: 1.651582e-01	ci left: 5.553792e-04	ci right 6.563754e-04	k: 562	n:930000
Cons ci ratio: 1.807659e-03	ci left: 8.341342e-01	ci right 8.356444e-01	k: 776448	n:930000
KS ci ratio: 3.534309e-01	ci left: 1.089405e-04	ci right 1.566304e-04	k: 122	n:930000
NCOA6   930000 perm   640 sec   (1453 perm/sec)   p_kst 1.311828e-04   p_cons 8.348903e-01   p_joint 6.043011e-04

Joint ci ratio: 1.644298e-01	ci left: 5.545707e-04	ci right 6.549311e-04	k: 567	n:940000
Cons ci ratio: 1.798212e-03	ci left: 8.341085e-01	ci right 8.356108e-01	k: 784769	n:940000
KS ci ratio: 3.520030e-01	ci left: 1.087512e-04	ci right 1.561219e-04	k: 123	n:940000
NCOA6   940000 perm   650 sec   (1446 perm/sec)   p_kst 1.308511e-04   p_cons 8.348606e-01   p_joint 6.031915e-04

Joint ci ratio: 1.627194e-01	ci left: 5.608478e-04	ci right 6.611851e-04	k: 579	n:950000
Cons ci ratio: 1.789061e-03	ci left: 8.340601e-01	ci right 8.355547e-01	k: 793068	n:950000
KS ci ratio: 3.505922e-01	ci left: 1.085662e-04	ci right 1.556236e-04	k: 124	n:950000
NCOA6   950000 perm   661 sec   (1438 perm/sec)   p_kst 1.305263e-04   p_cons 8.348084e-01   p_joint 6.094737e-04

Joint ci ratio: 1.630013e-01	ci left: 5.530070e-04	ci right 6.521298e-04	k: 577	n:960000
Cons ci ratio: 1.779787e-03	ci left: 8.340535e-01	ci right 8.355403e-01	k: 801406	n:960000
KS ci ratio: 3.491983e-01	ci left: 1.083854e-04	ci right 1.551354e-04	k: 125	n:960000
NCOA6   960000 perm   671 sec   (1430 perm/sec)   p_kst 1.302083e-04   p_cons 8.347979e-01   p_joint 6.010417e-04

Joint ci ratio: 1.617467e-01	ci left: 5.562073e-04	ci right 6.550618e-04	k: 586	n:970000
Cons ci ratio: 1.770503e-03	ci left: 8.340708e-01	ci right 8.355499e-01	k: 809767	n:970000
KS ci ratio: 3.451136e-01	ci left: 1.100912e-04	ci right 1.568974e-04	k: 128	n:970000
NCOA6   970000 perm   682 sec   (1423 perm/sec)   p_kst 1.319588e-04   p_cons 8.348113e-01   p_joint 6.041237e-04

Joint ci ratio: 1.606555e-01	ci left: 5.583657e-04	ci right 6.568697e-04	k: 594	n:980000
Cons ci ratio: 1.761545e-03	ci left: 8.340592e-01	ci right 8.355307e-01	k: 818100	n:980000
KS ci ratio: 3.411691e-01	ci left: 1.117653e-04	ci right 1.586204e-04	k: 131	n:980000
NCOA6   980000 perm   693 sec   (1415 perm/sec)   p_kst 1.336735e-04   p_cons 8.347959e-01   p_joint 6.061224e-04

Joint ci ratio: 1.597186e-01	ci left: 5.595130e-04	ci right 6.575885e-04	k: 601	n:990000
Cons ci ratio: 1.752555e-03	ci left: 8.340741e-01	ci right 8.355381e-01	k: 826459	n:990000
KS ci ratio: 3.398841e-01	ci left: 1.115601e-04	ci right 1.581144e-04	k: 132	n:990000
NCOA6   990000 perm   703 sec   (1408 perm/sec)   p_kst 1.333333e-04   p_cons 8.348071e-01   p_joint 6.070707e-04

Joint ci ratio: 1.586677e-01	ci left: 5.615992e-04	ci right 6.593310e-04	k: 609	n:1000000
Cons ci ratio: 1.744067e-03	ci left: 8.340306e-01	ci right 8.354875e-01	k: 834760	n:1000000
KS ci ratio: 3.361142e-01	ci left: 1.131899e-04	ci right 1.597869e-04	k: 135	n:1000000
NCOA6   1000000 perm   714 sec   (1401 perm/sec)   p_kst 1.350000e-04   p_cons 8.347600e-01   p_joint 6.090000e-04

Joint ci ratio: 1.577650e-01	ci left: 5.626951e-04	ci right 6.600078e-04	k: 616	n:1010000
Cons ci ratio: 1.734998e-03	ci left: 8.341001e-01	ci right 8.355495e-01	k: 843174	n:1010000
KS ci ratio: 3.336696e-01	ci left: 1.138829e-04	ci right 1.603509e-04	k: 137	n:1010000
NCOA6   1010000 perm   725 sec   (1394 perm/sec)   p_kst 1.356436e-04   p_cons 8.348257e-01   p_joint 6.099010e-04

Joint ci ratio: 1.567519e-01	ci left: 5.647131e-04	ci right 6.616886e-04	k: 624	n:1020000
Cons ci ratio: 1.726627e-03	ci left: 8.340789e-01	ci right 8.355212e-01	k: 851497	n:1020000
KS ci ratio: 3.312776e-01	ci left: 1.145635e-04	ci right 1.609027e-04	k: 139	n:1020000
NCOA6   1020000 perm   736 sec   (1386 perm/sec)   p_kst 1.362745e-04   p_cons 8.348010e-01   p_joint 6.117647e-04

Joint ci ratio: 1.556351e-01	ci left: 5.676268e-04	ci right 6.643435e-04	k: 633	n:1030000
Cons ci ratio: 1.718002e-03	ci left: 8.341184e-01	ci right 8.355535e-01	k: 859882	n:1030000
KS ci ratio: 3.266437e-01	ci left: 1.170141e-04	ci right 1.635435e-04	k: 143	n:1030000
NCOA6   1030000 perm   747 sec   (1379 perm/sec)   p_kst 1.388350e-04   p_cons 8.348369e-01   p_joint 6.145631e-04

Joint ci ratio: 1.550251e-01	ci left: 5.667897e-04	ci right 6.629500e-04	k: 638	n:1040000
Cons ci ratio: 1.709891e-03	ci left: 8.340945e-01	ci right 8.355229e-01	k: 868202	n:1040000
KS ci ratio: 3.243986e-01	ci left: 1.176549e-04	ci right 1.640507e-04	k: 145	n:1040000
NCOA6   1040000 perm   758 sec   (1372 perm/sec)   p_kst 1.394231e-04   p_cons 8.348096e-01   p_joint 6.134615e-04

Joint ci ratio: 1.543024e-01	ci left: 5.668848e-04	ci right 6.625715e-04	k: 644	n:1050000
Cons ci ratio: 1.701806e-03	ci left: 8.340854e-01	ci right 8.355070e-01	k: 876537	n:1050000
KS ci ratio: 3.243988e-01	ci left: 1.165344e-04	ci right 1.624883e-04	k: 145	n:1050000
NCOA6   1050000 perm   770 sec   (1364 perm/sec)   p_kst 1.380952e-04   p_cons 8.347971e-01   p_joint 6.133333e-04

Joint ci ratio: 1.543028e-01	ci left: 5.615367e-04	ci right 6.563210e-04	k: 644	n:1060000
Cons ci ratio: 1.693389e-03	ci left: 8.341493e-01	ci right 8.355640e-01	k: 884949	n:1060000
KS ci ratio: 3.243990e-01	ci left: 1.154350e-04	ci right 1.609554e-04	k: 145	n:1060000
NCOA6   1060000 perm   781 sec   (1357 perm/sec)   p_kst 1.367925e-04   p_cons 8.348575e-01   p_joint 6.075472e-04

Joint ci ratio: 1.537083e-01	ci left: 5.607815e-04	ci right 6.550400e-04	k: 649	n:1070000
Cons ci ratio: 1.685289e-03	ci left: 8.341802e-01	ci right 8.355881e-01	k: 893327	n:1070000
KS ci ratio: 3.221996e-01	ci left: 1.160737e-04	ci right 1.614715e-04	k: 147	n:1070000
NCOA6   1070000 perm   792 sec   (1350 perm/sec)   p_kst 1.373832e-04   p_cons 8.348850e-01   p_joint 6.065421e-04

Joint ci ratio: 1.575129e-01	ci left: 5.280022e-04	ci right 6.191553e-04	k: 618	n:1080000
Cons ci ratio: 1.677350e-03	ci left: 8.342031e-01	ci right 8.356044e-01	k: 901697	n:1080000
KS ci ratio: 3.221998e-01	ci left: 1.149989e-04	ci right 1.599764e-04	k: 147	n:1080000
NCOA6   1080000 perm   804 sec   (1344 perm/sec)   p_kst 1.361111e-04   p_cons 8.349046e-01   p_joint 5.722222e-04

Joint ci ratio: 1.565046e-01	ci left: 5.302093e-04	ci right 6.211025e-04	k: 626	n:1090000
Cons ci ratio: 1.669360e-03	ci left: 8.342522e-01	ci right 8.356469e-01	k: 910096	n:1090000
KS ci ratio: 3.189828e-01	ci left: 1.164747e-04	ci right 1.614817e-04	k: 150	n:1090000
NCOA6   1090000 perm   815 sec   (1337 perm/sec)   p_kst 1.376147e-04   p_cons 8.349505e-01   p_joint 5.743119e-04

Joint ci ratio: 1.556381e-01	ci left: 5.315043e-04	ci right 6.220681e-04	k: 633	n:1100000
Cons ci ratio: 1.661851e-03	ci left: 8.342395e-01	ci right 8.356279e-01	k: 918428	n:1100000
KS ci ratio: 3.189830e-01	ci left: 1.154158e-04	ci right 1.600137e-04	k: 150	n:1100000
NCOA6   1100000 perm   827 sec   (1330 perm/sec)   p_kst 1.363636e-04   p_cons 8.349345e-01   p_joint 5.754545e-04

Joint ci ratio: 1.560083e-01	ci left: 5.241185e-04	ci right 6.136561e-04	k: 630	n:1110000
Cons ci ratio: 1.654436e-03	ci left: 8.342278e-01	ci right 8.356100e-01	k: 926761	n:1110000
KS ci ratio: 3.189832e-01	ci left: 1.143761e-04	ci right 1.585722e-04	k: 150	n:1110000
NCOA6   1110000 perm   839 sec   (1323 perm/sec)   p_kst 1.351351e-04   p_cons 8.349198e-01   p_joint 5.675676e-04

Joint ci ratio: 1.552718e-01	ci left: 5.245874e-04	ci right 6.137426e-04	k: 636	n:1120000
Cons ci ratio: 1.646955e-03	ci left: 8.342442e-01	ci right 8.356202e-01	k: 935125	n:1120000
KS ci ratio: 3.179323e-01	ci left: 1.141763e-04	ci right 1.581203e-04	k: 151	n:1120000
NCOA6   1120000 perm   851 sec   (1317 perm/sec)   p_kst 1.348214e-04   p_cons 8.349330e-01   p_joint 5.678571e-04

Joint ci ratio: 1.546660e-01	ci left: 5.241982e-04	ci right 6.129075e-04	k: 641	n:1130000
Cons ci ratio: 1.639737e-03	ci left: 8.342328e-01	ci right 8.356027e-01	k: 943458	n:1130000
KS ci ratio: 3.158609e-01	ci left: 1.147951e-04	ci right 1.586312e-04	k: 153	n:1130000
NCOA6   1130000 perm   863 sec   (1310 perm/sec)   p_kst 1.353982e-04   p_cons 8.349186e-01   p_joint 5.672566e-04

Joint ci ratio: 1.586736e-01	ci left: 4.926295e-04	ci right 5.783623e-04	k: 609	n:1140000
Cons ci ratio: 1.632375e-03	ci left: 8.342620e-01	ci right 8.356258e-01	k: 951837	n:1140000
KS ci ratio: 3.158611e-01	ci left: 1.137881e-04	ci right 1.572398e-04	k: 153	n:1140000
NCOA6   1140000 perm   874 sec   (1304 perm/sec)   p_kst 1.342105e-04   p_cons 8.349447e-01   p_joint 5.342105e-04

Joint ci ratio: 1.578989e-01	ci left: 4.933565e-04	ci right 5.787570e-04	k: 615	n:1150000
Cons ci ratio: 1.625085e-03	ci left: 8.342951e-01	ci right 8.356528e-01	k: 960221	n:1150000
KS ci ratio: 3.138298e-01	ci left: 1.144004e-04	ci right 1.577485e-04	k: 155	n:1150000
NCOA6   1150000 perm   887 sec   (1297 perm/sec)   p_kst 1.347826e-04   p_cons 8.349748e-01   p_joint 5.347826e-04

Joint ci ratio: 1.572620e-01	ci left: 4.932438e-04	ci right 5.782479e-04	k: 620	n:1160000
Cons ci ratio: 1.618190e-03	ci left: 8.342766e-01	ci right 8.356286e-01	k: 968546	n:1160000
KS ci ratio: 3.138299e-01	ci left: 1.134142e-04	ci right 1.563887e-04	k: 155	n:1160000
NCOA6   1160000 perm   899 sec   (1291 perm/sec)   p_kst 1.336207e-04   p_cons 8.349534e-01   p_joint 5.344828e-04

Joint ci ratio: 1.653154e-01	ci left: 4.406337e-04	ci right 5.208471e-04	k: 561	n:1170000
Cons ci ratio: 1.611292e-03	ci left: 8.342739e-01	ci right 8.356201e-01	k: 976889	n:1170000
KS ci ratio: 3.138301e-01	ci left: 1.124448e-04	ci right 1.550520e-04	k: 155	n:1170000
NCOA6   1170000 perm   911 sec   (1284 perm/sec)   p_kst 1.324786e-04   p_cons 8.349479e-01   p_joint 4.794872e-04

Joint ci ratio: 1.647303e-01	ci left: 4.401494e-04	ci right 5.199629e-04	k: 565	n:1180000
Cons ci ratio: 1.604487e-03	ci left: 8.342705e-01	ci right 8.356109e-01	k: 985231	n:1180000
KS ci ratio: 3.108551e-01	ci left: 1.138350e-04	ci right 1.564790e-04	k: 158	n:1180000
NCOA6   1180000 perm   923 sec   (1278 perm/sec)   p_kst 1.338983e-04   p_cons 8.349415e-01   p_joint 4.788136e-04

Joint ci ratio: 1.334673e-01	ci left: 6.760175e-04	ci right 7.734978e-04	k: 861	n:1190000
Cons ci ratio: 1.597963e-03	ci left: 8.342334e-01	ci right 8.355683e-01	k: 993533	n:1190000
KS ci ratio: 3.079632e-01	ci left: 1.152037e-04	ci right 1.578802e-04	k: 161	n:1190000
NCOA6   1190000 perm   936 sec   (1272 perm/sec)   p_kst 1.352941e-04   p_cons 8.349017e-01   p_joint 7.235294e-04

Joint ci ratio: 1.357727e-01	ci left: 6.470306e-04	ci right 7.420728e-04	k: 832	n:1200000
Cons ci ratio: 1.591223e-03	ci left: 8.342479e-01	ci right 8.355772e-01	k: 1001896	n:1200000
KS ci ratio: 3.079634e-01	ci left: 1.142437e-04	ci right 1.565645e-04	k: 161	n:1200000
NCOA6   1200000 perm   948 sec   (1265 perm/sec)   p_kst 1.341667e-04   p_cons 8.349133e-01   p_joint 6.933333e-04

Joint ci ratio: 1.353672e-01	ci left: 6.456753e-04	ci right 7.402123e-04	k: 837	n:1210000
Cons ci ratio: 1.584682e-03	ci left: 8.342422e-01	ci right 8.355661e-01	k: 1010235	n:1210000
KS ci ratio: 3.060797e-01	ci left: 1.148251e-04	ci right 1.570504e-04	k: 163	n:1210000
NCOA6   1210000 perm   961 sec   (1259 perm/sec)   p_kst 1.347107e-04   p_cons 8.349050e-01   p_joint 6.917355e-04

Joint ci ratio: 1.347256e-01	ci left: 6.467187e-04	ci right 7.409238e-04	k: 845	n:1220000
Cons ci ratio: 1.578437e-03	ci left: 8.341989e-01	ci right 8.355175e-01	k: 1018528	n:1220000
KS ci ratio: 3.042302e-01	ci left: 1.153978e-04	ci right 1.575276e-04	k: 165	n:1220000
NCOA6   1220000 perm   973 sec   (1253 perm/sec)   p_kst 1.352459e-04   p_cons 8.348590e-01   p_joint 6.926230e-04

Joint ci ratio: 1.344084e-01	ci left: 6.446033e-04	ci right 7.382615e-04	k: 849	n:1230000
Cons ci ratio: 1.571955e-03	ci left: 8.342109e-01	ci right 8.355241e-01	k: 1026888	n:1230000
KS ci ratio: 3.024138e-01	ci left: 1.159618e-04	ci right 1.579962e-04	k: 167	n:1230000
NCOA6   1230000 perm   986 sec   (1247 perm/sec)   p_kst 1.357724e-04   p_cons 8.348683e-01   p_joint 6.902439e-04

Joint ci ratio: 1.346467e-01	ci left: 6.370668e-04	ci right 7.298072e-04	k: 846	n:1240000
Cons ci ratio: 1.565625e-03	ci left: 8.342098e-01	ci right 8.355177e-01	k: 1035232	n:1240000
KS ci ratio: 3.006295e-01	ci left: 1.165176e-04	ci right 1.584566e-04	k: 169	n:1240000
NCOA6   1240000 perm   999 sec   (1241 perm/sec)   p_kst 1.362903e-04   p_cons 8.348645e-01   p_joint 6.822581e-04

Joint ci ratio: 1.340938e-01	ci left: 6.373820e-04	ci right 7.297569e-04	k: 853	n:1250000
Cons ci ratio: 1.559280e-03	ci left: 8.342247e-01	ci right 8.355273e-01	k: 1043596	n:1250000
KS ci ratio: 2.980113e-01	ci left: 1.178053e-04	ci right 1.597686e-04	k: 172	n:1250000
NCOA6   1250000 perm   1012 sec   (1235 perm/sec)   p_kst 1.376000e-04   p_cons 8.348768e-01   p_joint 6.824000e-04

Joint ci ratio: 1.333926e-01	ci left: 6.392274e-04	ci right 7.313469e-04	k: 862	n:1260000
Cons ci ratio: 1.553240e-03	ci left: 8.341989e-01	ci right 8.354964e-01	k: 1051909	n:1260000
KS ci ratio: 2.963035e-01	ci left: 1.183393e-04	ci right 1.602059e-04	k: 174	n:1260000
NCOA6   1260000 perm   1025 sec   (1229 perm/sec)   p_kst 1.380952e-04   p_cons 8.348484e-01   p_joint 6.841270e-04

Joint ci ratio: 1.344098e-01	ci left: 6.243004e-04	ci right 7.150097e-04	k: 849	n:1270000
Cons ci ratio: 1.547208e-03	ci left: 8.341845e-01	ci right 8.354769e-01	k: 1060236	n:1270000
KS ci ratio: 2.954605e-01	ci left: 1.181364e-04	ci right 1.597901e-04	k: 175	n:1270000
NCOA6   1270000 perm   1038 sec   (1223 perm/sec)   p_kst 1.377953e-04   p_cons 8.348315e-01   p_joint 6.685039e-04

Joint ci ratio: 1.339380e-01	ci left: 6.239532e-04	ci right 7.142685e-04	k: 855	n:1280000
Cons ci ratio: 1.541285e-03	ci left: 8.341633e-01	ci right 8.354508e-01	k: 1068554	n:1280000
KS ci ratio: 2.929740e-01	ci left: 1.193843e-04	ci right 1.610580e-04	k: 178	n:1280000
NCOA6   1280000 perm   1052 sec   (1217 perm/sec)   p_kst 1.390625e-04   p_cons 8.348078e-01   p_joint 6.679688e-04

Joint ci ratio: 1.333164e-01	ci left: 6.251106e-04	ci right 7.151402e-04	k: 863	n:1290000
Cons ci ratio: 1.535468e-03	ci left: 8.341355e-01	ci right 8.354180e-01	k: 1076863	n:1290000
KS ci ratio: 2.913508e-01	ci left: 1.198956e-04	ci right 1.614731e-04	k: 180	n:1290000
NCOA6   1290000 perm   1065 sec   (1211 perm/sec)   p_kst 1.395349e-04   p_cons 8.347775e-01   p_joint 6.689922e-04

Joint ci ratio: 1.327796e-01	ci left: 6.255075e-04	ci right 7.152029e-04	k: 870	n:1300000
Cons ci ratio: 1.529426e-03	ci left: 8.341605e-01	ci right 8.354380e-01	k: 1085240	n:1300000
KS ci ratio: 2.905493e-01	ci left: 1.196865e-04	ci right 1.610562e-04	k: 181	n:1300000
NCOA6   1300000 perm   1078 sec   (1205 perm/sec)   p_kst 1.392308e-04   p_cons 8.348000e-01   p_joint 6.692308e-04

Joint ci ratio: 1.329327e-01	ci left: 6.192565e-04	ci right 7.081660e-04	k: 868	n:1310000
Cons ci ratio: 1.523324e-03	ci left: 8.342088e-01	ci right 8.354813e-01	k: 1093648	n:1310000
KS ci ratio: 2.881837e-01	ci left: 1.208967e-04	ci right 1.622826e-04	k: 184	n:1310000
NCOA6   1310000 perm   1092 sec   (1200 perm/sec)   p_kst 1.404580e-04   p_cons 8.348458e-01   p_joint 6.625954e-04

Joint ci ratio: 1.345701e-01	ci left: 5.991880e-04	ci right 6.863605e-04	k: 847	n:1320000
Cons ci ratio: 1.517533e-03	ci left: 8.342132e-01	ci right 8.354808e-01	k: 1101999	n:1320000
KS ci ratio: 2.881838e-01	ci left: 1.199808e-04	ci right 1.610532e-04	k: 184	n:1320000
NCOA6   1320000 perm   1105 sec   (1195 perm/sec)   p_kst 1.393939e-04   p_cons 8.348477e-01   p_joint 6.416667e-04

Joint ci ratio: 1.364345e-01	ci left: 5.779753e-04	ci right 6.633214e-04	k: 824	n:1330000
Cons ci ratio: 1.512107e-03	ci left: 8.341625e-01	ci right 8.354255e-01	k: 1110277	n:1330000
KS ci ratio: 2.858751e-01	ci left: 1.211720e-04	ci right 1.622598e-04	k: 187	n:1330000
NCOA6   1330000 perm   1118 sec   (1189 perm/sec)   p_kst 1.406015e-04   p_cons 8.347947e-01   p_joint 6.195489e-04

Joint ci ratio: 1.358593e-01	ci left: 5.787081e-04	ci right 6.637729e-04	k: 831	n:1340000
Cons ci ratio: 1.506617e-03	ci left: 8.341350e-01	ci right 8.353934e-01	k: 1118585	n:1340000
KS ci ratio: 2.858752e-01	ci left: 1.202677e-04	ci right 1.610490e-04	k: 187	n:1340000
NCOA6   1340000 perm   1132 sec   (1184 perm/sec)   p_kst 1.395522e-04   p_cons 8.347649e-01   p_joint 6.201493e-04

Joint ci ratio: 1.356152e-01	ci left: 5.765680e-04	ci right 6.611538e-04	k: 834	n:1350000
Cons ci ratio: 1.500864e-03	ci left: 8.341673e-01	ci right 8.354209e-01	k: 1126973	n:1350000
KS ci ratio: 2.851180e-01	ci left: 1.200645e-04	ci right 1.606496e-04	k: 188	n:1350000
NCOA6   1350000 perm   1145 sec   (1179 perm/sec)   p_kst 1.392593e-04   p_cons 8.347948e-01   p_joint 6.177778e-04

Joint ci ratio: 1.350502e-01	ci left: 5.773014e-04	ci right 6.616135e-04	k: 841	n:1360000
Cons ci ratio: 1.495185e-03	ci left: 8.341976e-01	ci right 8.354465e-01	k: 1135359	n:1360000
KS ci ratio: 2.851181e-01	ci left: 1.191817e-04	ci right 1.594684e-04	k: 188	n:1360000
NCOA6   1360000 perm   1159 sec   (1173 perm/sec)   p_kst 1.382353e-04   p_cons 8.348228e-01   p_joint 6.183824e-04

Joint ci ratio: 1.342552e-01	ci left: 5.801410e-04	ci right 6.643292e-04	k: 851	n:1370000
Cons ci ratio: 1.489770e-03	ci left: 8.341902e-01	ci right 8.354346e-01	k: 1143694	n:1370000
KS ci ratio: 2.821478e-01	ci left: 1.210238e-04	ci right 1.614312e-04	k: 192	n:1370000
NCOA6   1370000 perm   1173 sec   (1168 perm/sec)   p_kst 1.401460e-04   p_cons 8.348131e-01   p_joint 6.211679e-04

Joint ci ratio: 1.337849e-01	ci left: 5.801391e-04	ci right 6.640087e-04	k: 857	n:1380000
Cons ci ratio: 1.484347e-03	ci left: 8.341953e-01	ci right 8.354352e-01	k: 1152046	n:1380000
KS ci ratio: 2.821479e-01	ci left: 1.201468e-04	ci right 1.602614e-04	k: 192	n:1380000
NCOA6   1380000 perm   1187 sec   (1163 perm/sec)   p_kst 1.391304e-04   p_cons 8.348159e-01   p_joint 6.210145e-04

Joint ci ratio: 1.333196e-01	ci left: 5.801378e-04	ci right 6.636924e-04	k: 863	n:1390000
Cons ci ratio: 1.478810e-03	ci left: 8.342327e-01	ci right 8.354680e-01	k: 1160443	n:1390000
KS ci ratio: 2.814199e-01	ci left: 1.199511e-04	ci right 1.598786e-04	k: 193	n:1390000
NCOA6   1390000 perm   1200 sec   (1158 perm/sec)   p_kst 1.388489e-04   p_cons 8.348511e-01   p_joint 6.208633e-04

Joint ci ratio: 1.330122e-01	ci left: 5.787558e-04	ci right 6.619040e-04	k: 867	n:1400000
Cons ci ratio: 1.473551e-03	ci left: 8.342289e-01	ci right 8.354597e-01	k: 1168783	n:1400000
KS ci ratio: 2.799803e-01	ci left: 1.204223e-04	ci right 1.602655e-04	k: 195	n:1400000
NCOA6   1400000 perm   1214 sec   (1153 perm/sec)   p_kst 1.392857e-04   p_cons 8.348450e-01   p_joint 6.192857e-04

Joint ci ratio: 1.325548e-01	ci left: 5.787652e-04	ci right 6.616063e-04	k: 873	n:1410000
Cons ci ratio: 1.468473e-03	ci left: 8.342016e-01	ci right 8.354282e-01	k: 1177090	n:1410000
KS ci ratio: 2.799804e-01	ci left: 1.195682e-04	ci right 1.591289e-04	k: 195	n:1410000
NCOA6   1410000 perm   1228 sec   (1148 perm/sec)   p_kst 1.382979e-04   p_cons 8.348156e-01   p_joint 6.191489e-04

Joint ci ratio: 1.321022e-01	ci left: 5.787748e-04	ci right 6.613122e-04	k: 879	n:1420000
Cons ci ratio: 1.463290e-03	ci left: 8.342044e-01	ci right 8.354266e-01	k: 1185439	n:1420000
KS ci ratio: 2.792690e-01	ci left: 1.193811e-04	ci right 1.587617e-04	k: 196	n:1420000
NCOA6   1420000 perm   1242 sec   (1143 perm/sec)   p_kst 1.380282e-04   p_cons 8.348162e-01   p_joint 6.190141e-04

Joint ci ratio: 1.333208e-01	ci left: 5.639098e-04	ci right 6.451279e-04	k: 863	n:1430000
Cons ci ratio: 1.458228e-03	ci left: 8.341945e-01	ci right 8.354125e-01	k: 1193770	n:1430000
KS ci ratio: 2.771664e-01	ci left: 1.204978e-04	ci right 1.598954e-04	k: 199	n:1430000
NCOA6   1430000 perm   1256 sec   (1138 perm/sec)   p_kst 1.391608e-04   p_cons 8.348042e-01   p_joint 6.034965e-04

Joint ci ratio: 1.327839e-01	ci left: 5.646931e-04	ci right 6.456707e-04	k: 870	n:1440000
Cons ci ratio: 1.452962e-03	ci left: 8.342335e-01	ci right 8.354471e-01	k: 1202171	n:1440000
KS ci ratio: 2.757908e-01	ci left: 1.209536e-04	ci right 1.602699e-04	k: 201	n:1440000
NCOA6   1440000 perm   1271 sec   (1133 perm/sec)   p_kst 1.395833e-04   p_cons 8.348410e-01   p_joint 6.041667e-04

Joint ci ratio: 1.324802e-01	ci left: 5.634657e-04	ci right 6.440679e-04	k: 874	n:1450000
Cons ci ratio: 1.447960e-03	ci left: 8.342325e-01	ci right 8.354420e-01	k: 1210515	n:1450000
KS ci ratio: 2.737652e-01	ci left: 1.220459e-04	ci right 1.613757e-04	k: 204	n:1450000
NCOA6   1450000 perm   1285 sec   (1129 perm/sec)   p_kst 1.406897e-04   p_cons 8.348379e-01   p_joint 6.027586e-04

Joint ci ratio: 1.320283e-01	ci left: 5.635800e-04	ci right 6.439020e-04	k: 880	n:1460000
Cons ci ratio: 1.442796e-03	ci left: 8.342721e-01	ci right 8.354773e-01	k: 1218918	n:1460000
KS ci ratio: 2.731000e-01	ci left: 1.218479e-04	ci right 1.610022e-04	k: 205	n:1460000
NCOA6   1460000 perm   1299 sec   (1124 perm/sec)   p_kst 1.404110e-04   p_cons 8.348753e-01   p_joint 6.027397e-04

Joint ci ratio: 1.333219e-01	ci left: 5.485650e-04	ci right 6.275738e-04	k: 863	n:1470000
Cons ci ratio: 1.437816e-03	ci left: 8.342866e-01	ci right 8.354876e-01	k: 1227285	n:1470000
KS ci ratio: 2.717838e-01	ci left: 1.222867e-04	ci right 1.613602e-04	k: 207	n:1470000
NCOA6   1470000 perm   1313 sec   (1119 perm/sec)   p_kst 1.408163e-04   p_cons 8.348878e-01   p_joint 5.870748e-04

Joint ci ratio: 1.356189e-01	ci left: 5.259226e-04	ci right 6.030806e-04	k: 834	n:1480000
Cons ci ratio: 1.433101e-03	ci left: 8.342596e-01	ci right 8.354567e-01	k: 1235591	n:1480000
KS ci ratio: 2.711328e-01	ci left: 1.220901e-04	ci right 1.609915e-04	k: 208	n:1480000
NCOA6   1480000 perm   1328 sec   (1115 perm/sec)   p_kst 1.405405e-04   p_cons 8.348588e-01   p_joint 5.635135e-04

Joint ci ratio: 1.366048e-01	ci left: 5.146133e-04	ci right 5.907056e-04	k: 822	n:1490000
Cons ci ratio: 1.428484e-03	ci left: 8.342229e-01	ci right 8.354161e-01	k: 1243882	n:1490000
KS ci ratio: 2.704865e-01	ci left: 1.218963e-04	ci right 1.606276e-04	k: 209	n:1490000
NCOA6   1490000 perm   1342 sec   (1110 perm/sec)   p_kst 1.402685e-04   p_cons 8.348201e-01   p_joint 5.516779e-04

Joint ci ratio: 1.360275e-01	ci left: 5.156901e-04	ci right 5.915932e-04	k: 829	n:1500000
Cons ci ratio: 1.423715e-03	ci left: 8.342248e-01	ci right 8.354139e-01	k: 1252230	n:1500000
KS ci ratio: 2.698449e-01	ci left: 1.217051e-04	ci right 1.602685e-04	k: 210	n:1500000
NCOA6   1500000 perm   1357 sec   (1105 perm/sec)   p_kst 1.400000e-04   p_cons 8.348200e-01   p_joint 5.526667e-04

Joint ci ratio: 1.357010e-01	ci left: 5.148339e-04	ci right 5.904144e-04	k: 833	n:1510000
Cons ci ratio: 1.419143e-03	ci left: 8.341974e-01	ci right 8.353827e-01	k: 1260534	n:1510000
KS ci ratio: 2.698450e-01	ci left: 1.208991e-04	ci right 1.592071e-04	k: 210	n:1510000
NCOA6   1510000 perm   1372 sec   (1101 perm/sec)   p_kst 1.390728e-04   p_cons 8.347907e-01   p_joint 5.516556e-04

Joint ci ratio: 1.349745e-01	ci left: 5.171674e-04	ci right 5.926515e-04	k: 842	n:1520000
Cons ci ratio: 1.414410e-03	ci left: 8.342106e-01	ci right 8.353920e-01	k: 1268899	n:1520000
KS ci ratio: 2.679467e-01	ci left: 1.219444e-04	ci right 1.602661e-04	k: 213	n:1520000
NCOA6   1520000 perm   1386 sec   (1096 perm/sec)   p_kst 1.401316e-04   p_cons 8.348020e-01   p_joint 5.539474e-04

Joint ci ratio: 1.343384e-01	ci left: 5.188399e-04	ci right 5.941827e-04	k: 850	n:1530000
Cons ci ratio: 1.409937e-03	ci left: 8.341818e-01	ci right 8.353594e-01	k: 1277200	n:1530000
KS ci ratio: 2.673229e-01	ci left: 1.217571e-04	ci right 1.599159e-04	k: 214	n:1530000
NCOA6   1530000 perm   1401 sec   (1092 perm/sec)   p_kst 1.398693e-04   p_cons 8.347712e-01   p_joint 5.555556e-04

Joint ci ratio: 1.337893e-01	ci left: 5.198638e-04	ci right 5.950221e-04	k: 857	n:1540000
Cons ci ratio: 1.405384e-03	ci left: 8.341774e-01	ci right 8.353512e-01	k: 1285538	n:1540000
KS ci ratio: 2.660881e-01	ci left: 1.221784e-04	ci right 1.602628e-04	k: 216	n:1540000
NCOA6   1540000 perm   1416 sec   (1087 perm/sec)   p_kst 1.402597e-04   p_cons 8.347649e-01   p_joint 5.564935e-04

Joint ci ratio: 1.334786e-01	ci left: 5.190042e-04	ci right 5.938502e-04	k: 861	n:1550000
Cons ci ratio: 1.400898e-03	ci left: 8.341686e-01	ci right 8.353386e-01	k: 1293869	n:1550000
KS ci ratio: 2.654771e-01	ci left: 1.219923e-04	ci right 1.599169e-04	k: 217	n:1550000
NCOA6   1550000 perm   1431 sec   (1083 perm/sec)   p_kst 1.400000e-04   p_cons 8.347542e-01   p_joint 5.554839e-04

Joint ci ratio: 1.328633e-01	ci left: 5.206346e-04	ci right 5.953424e-04	k: 869	n:1560000
Cons ci ratio: 1.396230e-03	ci left: 8.342041e-01	ci right 8.353703e-01	k: 1302269	n:1560000
KS ci ratio: 2.642676e-01	ci left: 1.224072e-04	ci right 1.602588e-04	k: 219	n:1560000
NCOA6   1560000 perm   1446 sec   (1079 perm/sec)   p_kst 1.403846e-04   p_cons 8.347878e-01   p_joint 5.570513e-04

Joint ci ratio: 1.327872e-01	ci left: 5.179342e-04	ci right 5.922085e-04	k: 870	n:1570000
Cons ci ratio: 1.391924e-03	ci left: 8.341767e-01	ci right 8.353392e-01	k: 1310571	n:1570000
KS ci ratio: 2.642677e-01	ci left: 1.216276e-04	ci right 1.592381e-04	k: 219	n:1570000
NCOA6   1570000 perm   1461 sec   (1074 perm/sec)   p_kst 1.394904e-04   p_cons 8.347586e-01   p_joint 5.541401e-04

Joint ci ratio: 1.319564e-01	ci left: 5.213877e-04	ci right 5.956527e-04	k: 881	n:1580000
Cons ci ratio: 1.387415e-03	ci left: 8.341978e-01	ci right 8.353566e-01	k: 1318949	n:1580000
KS ci ratio: 2.630746e-01	ci left: 1.220399e-04	ci right 1.595795e-04	k: 221	n:1580000
NCOA6   1580000 perm   1477 sec   (1070 perm/sec)   p_kst 1.398734e-04   p_cons 8.347778e-01   p_joint 5.575949e-04

Joint ci ratio: 1.321817e-01	ci left: 5.162840e-04	ci right 5.899575e-04	k: 878	n:1590000
Cons ci ratio: 1.383193e-03	ci left: 8.341702e-01	ci right 8.353254e-01	k: 1327250	n:1590000
KS ci ratio: 2.630747e-01	ci left: 1.212724e-04	ci right 1.585759e-04	k: 221	n:1590000
NCOA6   1590000 perm   1492 sec   (1066 perm/sec)   p_kst 1.389937e-04   p_cons 8.347484e-01   p_joint 5.522013e-04

Joint ci ratio: 1.320317e-01	ci left: 5.142659e-04	ci right 5.875616e-04	k: 880	n:1600000
Cons ci ratio: 1.378853e-03	ci left: 8.341742e-01	ci right 8.353258e-01	k: 1335601	n:1600000
KS ci ratio: 2.624842e-01	ci left: 1.210983e-04	ci right 1.582509e-04	k: 222	n:1600000
NCOA6   1600000 perm   1507 sec   (1062 perm/sec)   p_kst 1.387500e-04   p_cons 8.347506e-01   p_joint 5.500000e-04

Joint ci ratio: 1.321070e-01	ci left: 5.104710e-04	ci right 5.832706e-04	k: 879	n:1610000
Cons ci ratio: 1.374497e-03	ci left: 8.341894e-01	ci right 8.353374e-01	k: 1343970	n:1610000
KS ci ratio: 2.624844e-01	ci left: 1.203461e-04	ci right 1.572679e-04	k: 222	n:1610000
NCOA6   1610000 perm   1522 sec   (1058 perm/sec)   p_kst 1.378882e-04   p_cons 8.347640e-01   p_joint 5.459627e-04

Joint ci ratio: 1.318078e-01	ci left: 5.097076e-04	ci right 5.822208e-04	k: 883	n:1620000
Cons ci ratio: 1.370266e-03	ci left: 8.341877e-01	ci right 8.353321e-01	k: 1352312	n:1620000
KS ci ratio: 2.624845e-01	ci left: 1.196032e-04	ci right 1.562972e-04	k: 222	n:1620000
NCOA6   1620000 perm   1537 sec   (1054 perm/sec)   p_kst 1.370370e-04   p_cons 8.347605e-01   p_joint 5.450617e-04

Joint ci ratio: 1.320324e-01	ci left: 5.048007e-04	ci right 5.767478e-04	k: 880	n:1630000
Cons ci ratio: 1.366155e-03	ci left: 8.341694e-01	ci right 8.353104e-01	k: 1360627	n:1630000
KS ci ratio: 2.624846e-01	ci left: 1.188694e-04	ci right 1.553383e-04	k: 222	n:1630000
NCOA6   1630000 perm   1553 sec   (1050 perm/sec)   p_kst 1.361963e-04   p_cons 8.347405e-01   p_joint 5.398773e-04

Joint ci ratio: 1.315851e-01	ci left: 5.052605e-04	ci right 5.770101e-04	k: 886	n:1640000
Cons ci ratio: 1.362030e-03	ci left: 8.341617e-01	ci right 8.352993e-01	k: 1368959	n:1640000
KS ci ratio: 2.607365e-01	ci left: 1.198540e-04	ci right 1.563401e-04	k: 225	n:1640000
NCOA6   1640000 perm   1568 sec   (1046 perm/sec)   p_kst 1.371951e-04   p_cons 8.347311e-01   p_joint 5.402439e-04

Joint ci ratio: 1.315111e-01	ci left: 5.027844e-04	ci right 5.741391e-04	k: 887	n:1650000
Cons ci ratio: 1.357850e-03	ci left: 8.341730e-01	ci right 8.353070e-01	k: 1377322	n:1650000
KS ci ratio: 2.601616e-01	ci left: 1.196941e-04	ci right 1.560381e-04	k: 226	n:1650000
NCOA6   1650000 perm   1584 sec   (1042 perm/sec)   p_kst 1.369697e-04   p_cons 8.347406e-01   p_joint 5.375758e-04

Joint ci ratio: 1.310691e-01	ci left: 5.032514e-04	ci right 5.744136e-04	k: 893	n:1660000
Cons ci ratio: 1.353793e-03	ci left: 8.341666e-01	ci right 8.352973e-01	k: 1385656	n:1660000
KS ci ratio: 2.590229e-01	ci left: 1.200994e-04	ci right 1.563811e-04	k: 228	n:1660000
NCOA6   1660000 perm   1599 sec   (1038 perm/sec)   p_kst 1.373494e-04   p_cons 8.347325e-01   p_joint 5.379518e-04

Joint ci ratio: 1.308498e-01	ci left: 5.019754e-04	ci right 5.728292e-04	k: 896	n:1670000
Cons ci ratio: 1.349761e-03	ci left: 8.341627e-01	ci right 8.352900e-01	k: 1393994	n:1670000
KS ci ratio: 2.584593e-01	ci left: 1.199403e-04	ci right 1.560823e-04	k: 229	n:1670000
NCOA6   1670000 perm   1615 sec   (1034 perm/sec)   p_kst 1.371257e-04   p_cons 8.347269e-01   p_joint 5.365269e-04

Joint ci ratio: 1.303421e-01	ci left: 5.030180e-04	ci right 5.737222e-04	k: 903	n:1680000
Cons ci ratio: 1.345843e-03	ci left: 8.341428e-01	ci right 8.352668e-01	k: 1402305	n:1680000
KS ci ratio: 2.567899e-01	ci left: 1.208968e-04	ci right 1.570540e-04	k: 232	n:1680000
NCOA6   1680000 perm   1631 sec   (1030 perm/sec)   p_kst 1.380952e-04   p_cons 8.347054e-01   p_joint 5.375000e-04

Joint ci ratio: 1.318840e-01	ci left: 4.880229e-04	ci right 5.574944e-04	k: 882	n:1690000
Cons ci ratio: 1.341879e-03	ci left: 8.341397e-01	ci right 8.352603e-01	k: 1410644	n:1690000
KS ci ratio: 2.556947e-01	ci left: 1.212888e-04	ci right 1.573839e-04	k: 234	n:1690000
NCOA6   1690000 perm   1648 sec   (1026 perm/sec)   p_kst 1.384615e-04   p_cons 8.347006e-01   p_joint 5.218935e-04

Joint ci ratio: 1.314382e-01	ci left: 4.885653e-04	ci right 5.578606e-04	k: 888	n:1700000
Cons ci ratio: 1.337892e-03	ci left: 8.341484e-01	ci right 8.352657e-01	k: 1419003	n:1700000
KS ci ratio: 2.551525e-01	ci left: 1.211259e-04	ci right 1.570839e-04	k: 235	n:1700000
NCOA6   1700000 perm   1664 sec   (1022 perm/sec)   p_kst 1.382353e-04   p_cons 8.347076e-01   p_joint 5.223529e-04

Joint ci ratio: 1.309237e-01	ci left: 4.896675e-04	ci right 5.588260e-04	k: 895	n:1710000
Cons ci ratio: 1.333960e-03	ci left: 8.341529e-01	ci right 8.352670e-01	k: 1427355	n:1710000
KS ci ratio: 2.546136e-01	ci left: 1.209650e-04	ci right 1.567874e-04	k: 236	n:1710000
NCOA6   1710000 perm   1680 sec   (1018 perm/sec)   p_kst 1.380117e-04   p_cons 8.347105e-01   p_joint 5.233918e-04

Joint ci ratio: 1.304875e-01	ci left: 4.901949e-04	ci right 5.591794e-04	k: 901	n:1720000
Cons ci ratio: 1.329973e-03	ci left: 8.341760e-01	ci right 8.352868e-01	k: 1435739	n:1720000
KS ci ratio: 2.530172e-01	ci left: 1.218950e-04	ci right 1.577307e-04	k: 239	n:1720000
NCOA6   1720000 perm   1695 sec   (1015 perm/sec)   p_kst 1.389535e-04   p_cons 8.347320e-01   p_joint 5.238372e-04

Joint ci ratio: 1.299840e-01	ci left: 4.912758e-04	ci right 5.601251e-04	k: 908	n:1730000
Cons ci ratio: 1.326061e-03	ci left: 8.341908e-01	ci right 8.352983e-01	k: 1444109	n:1730000
KS ci ratio: 2.519694e-01	ci left: 1.222733e-04	ci right 1.580481e-04	k: 241	n:1730000
NCOA6   1730000 perm   1711 sec   (1011 perm/sec)   p_kst 1.393064e-04   p_cons 8.347451e-01   p_joint 5.248555e-04

Joint ci ratio: 1.294157e-01	ci left: 4.929009e-04	ci right 5.616528e-04	k: 916	n:1740000
Cons ci ratio: 1.322150e-03	ci left: 8.342123e-01	ci right 8.353165e-01	k: 1452491	n:1740000
KS ci ratio: 2.504219e-01	ci left: 1.231862e-04	ci right 1.589722e-04	k: 244	n:1740000
NCOA6   1740000 perm   1727 sec   (1007 perm/sec)   p_kst 1.402299e-04   p_cons 8.347649e-01   p_joint 5.264368e-04

Joint ci ratio: 1.289244e-01	ci left: 4.939551e-04	ci right 5.625725e-04	k: 923	n:1750000
Cons ci ratio: 1.318461e-03	ci left: 8.341940e-01	ci right 8.352952e-01	k: 1460804	n:1750000
KS ci ratio: 2.499124e-01	ci left: 1.230179e-04	ci right 1.586709e-04	k: 245	n:1750000
NCOA6   1750000 perm   1744 sec   (1004 perm/sec)   p_kst 1.400000e-04   p_cons 8.347451e-01   p_joint 5.274286e-04

Joint ci ratio: 1.290645e-01	ci left: 4.900488e-04	ci right 5.582031e-04	k: 921	n:1760000
Cons ci ratio: 1.314682e-03	ci left: 8.342016e-01	ci right 8.352996e-01	k: 1469162	n:1760000
KS ci ratio: 2.494061e-01	ci left: 1.228516e-04	ci right 1.583731e-04	k: 246	n:1760000
NCOA6   1760000 perm   1760 sec   (1000 perm/sec)   p_kst 1.397727e-04   p_cons 8.347511e-01   p_joint 5.232955e-04

Joint ci ratio: 1.289248e-01	ci left: 4.883736e-04	ci right 5.562159e-04	k: 923	n:1770000
Cons ci ratio: 1.310927e-03	ci left: 8.342108e-01	ci right 8.353056e-01	k: 1477523	n:1770000
KS ci ratio: 2.489027e-01	ci left: 1.226872e-04	ci right 1.580785e-04	k: 247	n:1770000
NCOA6   1770000 perm   1776 sec   (997 perm/sec)   p_kst 1.395480e-04   p_cons 8.347588e-01   p_joint 5.214689e-04

Joint ci ratio: 1.294871e-01	ci left: 4.812807e-04	ci right 5.484516e-04	k: 915	n:1780000
Cons ci ratio: 1.307171e-03	ci left: 8.342266e-01	ci right 8.353184e-01	k: 1485896	n:1780000
KS ci ratio: 2.489028e-01	ci left: 1.219979e-04	ci right 1.571904e-04	k: 247	n:1780000
NCOA6   1780000 perm   1792 sec   (993 perm/sec)   p_kst 1.387640e-04   p_cons 8.347730e-01   p_joint 5.140449e-04

Joint ci ratio: 1.314399e-01	ci left: 4.640002e-04	ci right 5.298122e-04	k: 888	n:1790000
Cons ci ratio: 1.303425e-03	ci left: 8.342473e-01	ci right 8.353360e-01	k: 1494278	n:1790000
KS ci ratio: 2.484026e-01	ci left: 1.218402e-04	ci right 1.569057e-04	k: 248	n:1790000
NCOA6   1790000 perm   1809 sec   (990 perm/sec)   p_kst 1.385475e-04   p_cons 8.347922e-01   p_joint 4.960894e-04

Joint ci ratio: 1.351408e-01	ci left: 4.356443e-04	ci right 4.993141e-04	k: 840	n:1800000
Cons ci ratio: 1.299707e-03	ci left: 8.342684e-01	ci right 8.353539e-01	k: 1502661	n:1800000
KS ci ratio: 2.484027e-01	ci left: 1.211633e-04	ci right 1.560340e-04	k: 248	n:1800000
NCOA6   1800000 perm   1825 sec   (986 perm/sec)   p_kst 1.377778e-04   p_cons 8.348117e-01   p_joint 4.666667e-04

Joint ci ratio: 1.392606e-01	ci left: 4.070942e-04	ci right 4.685557e-04	k: 791	n:1810000
Cons ci ratio: 1.296128e-03	ci left: 8.342665e-01	ci right 8.353490e-01	k: 1511003	n:1810000
KS ci ratio: 2.484027e-01	ci left: 1.204939e-04	ci right 1.551719e-04	k: 248	n:1810000
NCOA6   1810000 perm   1842 sec   (982 perm/sec)   p_kst 1.370166e-04   p_cons 8.348083e-01   p_joint 4.370166e-04

Joint ci ratio: 1.384759e-01	ci left: 4.096307e-04	ci right 4.710979e-04	k: 800	n:1820000
Cons ci ratio: 1.292467e-03	ci left: 8.342883e-01	ci right 8.353678e-01	k: 1519388	n:1820000
KS ci ratio: 2.459454e-01	ci left: 1.224090e-04	ci right 1.572364e-04	k: 253	n:1820000
NCOA6   1820000 perm   1859 sec   (979 perm/sec)   p_kst 1.390110e-04   p_cons 8.348286e-01   p_joint 4.395604e-04

Joint ci ratio: 1.382173e-01	ci left: 4.089749e-04	ci right 4.702197e-04	k: 803	n:1830000
Cons ci ratio: 1.288952e-03	ci left: 8.342852e-01	ci right 8.353618e-01	k: 1527728	n:1830000
KS ci ratio: 2.459455e-01	ci left: 1.217401e-04	ci right 1.563772e-04	k: 253	n:1830000
NCOA6   1830000 perm   1876 sec   (976 perm/sec)   p_kst 1.382514e-04   p_cons 8.348240e-01   p_joint 4.387978e-04

Joint ci ratio: 1.394374e-01	ci left: 3.994077e-04	ci right 4.597915e-04	k: 789	n:1840000
Cons ci ratio: 1.285465e-03	ci left: 8.342822e-01	ci right 8.353559e-01	k: 1536068	n:1840000
KS ci ratio: 2.445057e-01	ci left: 1.226087e-04	ci right 1.572577e-04	k: 256	n:1840000
NCOA6   1840000 perm   1893 sec   (972 perm/sec)   p_kst 1.391304e-04   p_cons 8.348196e-01   p_joint 4.288043e-04

Joint ci ratio: 1.409631e-01	ci left: 3.883817e-04	ci right 4.477951e-04	k: 772	n:1850000
Cons ci ratio: 1.282208e-03	ci left: 8.342359e-01	ci right 8.353068e-01	k: 1544328	n:1850000
KS ci ratio: 2.435598e-01	ci left: 1.229609e-04	ci right 1.575547e-04	k: 258	n:1850000
NCOA6   1850000 perm   1910 sec   (968 perm/sec)   p_kst 1.394595e-04   p_cons 8.347719e-01   p_joint 4.172973e-04

Joint ci ratio: 1.408721e-01	ci left: 3.868122e-04	ci right 4.459442e-04	k: 773	n:1860000
Cons ci ratio: 1.278771e-03	ci left: 8.342343e-01	ci right 8.353023e-01	k: 1552670	n:1860000
KS ci ratio: 2.435599e-01	ci left: 1.222998e-04	ci right 1.567076e-04	k: 258	n:1860000
NCOA6   1860000 perm   1928 sec   (965 perm/sec)   p_kst 1.387097e-04   p_cons 8.347688e-01   p_joint 4.155914e-04

Joint ci ratio: 1.405095e-01	ci left: 3.868075e-04	ci right 4.457737e-04	k: 777	n:1870000
Cons ci ratio: 1.275309e-03	ci left: 8.342439e-01	ci right 8.353090e-01	k: 1561033	n:1870000
KS ci ratio: 2.435600e-01	ci left: 1.216458e-04	ci right 1.558696e-04	k: 258	n:1870000
NCOA6   1870000 perm   1945 sec   (961 perm/sec)   p_kst 1.379679e-04   p_cons 8.347770e-01   p_joint 4.155080e-04

Joint ci ratio: 1.400602e-01	ci left: 3.873162e-04	ci right 4.461554e-04	k: 782	n:1880000
Cons ci ratio: 1.272025e-03	ci left: 8.342210e-01	ci right 8.352833e-01	k: 1569335	n:1880000
KS ci ratio: 2.430912e-01	ci left: 1.214983e-04	ci right 1.556048e-04	k: 259	n:1880000
NCOA6   1880000 perm   1963 sec   (958 perm/sec)   p_kst 1.377660e-04   p_cons 8.347527e-01   p_joint 4.159574e-04

Joint ci ratio: 1.396151e-01	ci left: 3.878199e-04	ci right 4.465328e-04	k: 787	n:1890000
Cons ci ratio: 1.268596e-03	ci left: 8.342354e-01	ci right 8.352948e-01	k: 1577707	n:1890000
KS ci ratio: 2.426251e-01	ci left: 1.213523e-04	ci right 1.553428e-04	k: 260	n:1890000
NCOA6   1890000 perm   1981 sec   (954 perm/sec)   p_kst 1.375661e-04   p_cons 8.347656e-01   p_joint 4.164021e-04

Joint ci ratio: 1.404197e-01	ci left: 3.812077e-04	ci right 4.392801e-04	k: 778	n:1900000
Cons ci ratio: 1.265170e-03	ci left: 8.342548e-01	ci right 8.353115e-01	k: 1586089	n:1900000
KS ci ratio: 2.421616e-01	ci left: 1.212080e-04	ci right 1.550834e-04	k: 261	n:1900000
NCOA6   1900000 perm   1998 sec   (951 perm/sec)   p_kst 1.373684e-04   p_cons 8.347837e-01   p_joint 4.094737e-04

Joint ci ratio: 1.397930e-01	ci left: 3.827484e-04	ci right 4.407735e-04	k: 785	n:1910000
Cons ci ratio: 1.261901e-03	ci left: 8.342458e-01	ci right 8.352997e-01	k: 1594417	n:1910000
KS ci ratio: 2.403338e-01	ci left: 1.225410e-04	ci right 1.564920e-04	k: 265	n:1910000
NCOA6   1910000 perm   2016 sec   (947 perm/sec)   p_kst 1.387435e-04   p_cons 8.347733e-01   p_joint 4.109948e-04

Joint ci ratio: 1.393504e-01	ci left: 3.832681e-04	ci right 4.411728e-04	k: 790	n:1920000
Cons ci ratio: 1.258518e-03	ci left: 8.342677e-01	ci right 8.353188e-01	k: 1602804	n:1920000
KS ci ratio: 2.398834e-01	ci left: 1.223923e-04	ci right 1.562291e-04	k: 266	n:1920000
NCOA6   1920000 perm   2034 sec   (944 perm/sec)   p_kst 1.385417e-04   p_cons 8.347938e-01   p_joint 4.114583e-04

Joint ci ratio: 1.388248e-01	ci left: 3.842829e-04	ci right 4.421038e-04	k: 796	n:1930000
Cons ci ratio: 1.255220e-03	ci left: 8.342764e-01	ci right 8.353247e-01	k: 1611166	n:1930000
KS ci ratio: 2.381063e-01	ci left: 1.237066e-04	ci right 1.576160e-04	k: 270	n:1930000
NCOA6   1930000 perm   2052 sec   (941 perm/sec)   p_kst 1.398964e-04   p_cons 8.348010e-01   p_joint 4.124352e-04

Joint ci ratio: 1.388250e-01	ci left: 3.823020e-04	ci right 4.398250e-04	k: 796	n:1940000
Cons ci ratio: 1.251988e-03	ci left: 8.342762e-01	ci right 8.353218e-01	k: 1619511	n:1940000
KS ci ratio: 2.381063e-01	ci left: 1.230689e-04	ci right 1.568035e-04	k: 270	n:1940000
NCOA6   1940000 perm   2070 sec   (937 perm/sec)   p_kst 1.391753e-04   p_cons 8.347995e-01   p_joint 4.103093e-04

Joint ci ratio: 1.143724e-01	ci left: 5.676121e-04	ci right 6.369619e-04	k: 1173	n:1950000
Cons ci ratio: 1.248627e-03	ci left: 8.343099e-01	ci right 8.353527e-01	k: 1627922	n:1950000
KS ci ratio: 2.367992e-01	ci left: 1.238848e-04	ci right 1.576292e-04	k: 273	n:1950000
NCOA6   1950000 perm   2088 sec   (934 perm/sec)   p_kst 1.400000e-04   p_cons 8.348318e-01   p_joint 6.015385e-04

Joint ci ratio: 1.141781e-01	ci left: 5.666986e-04	ci right 6.358112e-04	k: 1177	n:1960000
Cons ci ratio: 1.245266e-03	ci left: 8.343493e-01	ci right 8.353895e-01	k: 1636345	n:1960000
KS ci ratio: 2.367992e-01	ci left: 1.232527e-04	ci right 1.568250e-04	k: 273	n:1960000
NCOA6   1960000 perm   2106 sec   (931 perm/sec)   p_kst 1.392857e-04   p_cons 8.348699e-01   p_joint 6.005102e-04

Joint ci ratio: 1.139366e-01	ci left: 5.662876e-04	ci right 6.351942e-04	k: 1182	n:1970000
Cons ci ratio: 1.242196e-03	ci left: 8.343295e-01	ci right 8.353670e-01	k: 1644652	n:1970000
KS ci ratio: 2.367993e-01	ci left: 1.226270e-04	ci right 1.560289e-04	k: 273	n:1970000
NCOA6   1970000 perm   2124 sec   (927 perm/sec)   p_kst 1.385787e-04   p_cons 8.348487e-01   p_joint 6.000000e-04

Joint ci ratio: 1.137925e-01	ci left: 5.648996e-04	ci right 6.335445e-04	k: 1185	n:1980000
Cons ci ratio: 1.238995e-03	ci left: 8.343442e-01	ci right 8.353791e-01	k: 1653027	n:1980000
KS ci ratio: 2.367994e-01	ci left: 1.220077e-04	ci right 1.552409e-04	k: 273	n:1980000
NCOA6   1980000 perm   2142 sec   (924 perm/sec)   p_kst 1.378788e-04   p_cons 8.348621e-01   p_joint 5.984848e-04

Joint ci ratio: 1.135057e-01	ci left: 5.649902e-04	ci right 6.334616e-04	k: 1191	n:1990000
Cons ci ratio: 1.235945e-03	ci left: 8.343306e-01	ci right 8.353629e-01	k: 1661346	n:1990000
KS ci ratio: 2.367995e-01	ci left: 1.213946e-04	ci right 1.544608e-04	k: 273	n:1990000
NCOA6   1990000 perm   2161 sec   (921 perm/sec)   p_kst 1.371859e-04   p_cons 8.348472e-01   p_joint 5.984925e-04

Joint ci ratio: 1.134107e-01	ci left: 5.631369e-04	ci right 6.313227e-04	k: 1193	n:2000000
Cons ci ratio: 1.233004e-03	ci left: 8.342976e-01	ci right 8.353274e-01	k: 1669626	n:2000000
KS ci ratio: 2.367996e-01	ci left: 1.207876e-04	ci right 1.536885e-04	k: 273	n:2000000
NCOA6   2000000 perm   2179 sec   (918 perm/sec)   p_kst 1.365000e-04   p_cons 8.348130e-01   p_joint 5.965000e-04

Joint ci ratio: 1.131740e-01	ci left: 5.627523e-04	ci right 6.307398e-04	k: 1198	n:2010000
Cons ci ratio: 1.229951e-03	ci left: 8.342948e-01	ci right 8.353221e-01	k: 1677966	n:2010000
KS ci ratio: 2.359400e-01	ci left: 1.211228e-04	ci right 1.539777e-04	k: 275	n:2010000
NCOA6   2010000 perm   2198 sec   (914 perm/sec)   p_kst 1.368159e-04   p_cons 8.348090e-01   p_joint 5.960199e-04

Joint ci ratio: 1.130328e-01	ci left: 5.614095e-04	ci right 6.291445e-04	k: 1201	n:2020000
Cons ci ratio: 1.226943e-03	ci left: 8.342872e-01	ci right 8.353119e-01	k: 1686296	n:2020000
KS ci ratio: 2.359401e-01	ci left: 1.205232e-04	ci right 1.532155e-04	k: 275	n:2020000
NCOA6   2020000 perm   2217 sec   (911 perm/sec)   p_kst 1.361386e-04   p_cons 8.348000e-01   p_joint 5.945545e-04

Joint ci ratio: 1.127517e-01	ci left: 5.615161e-04	ci right 6.290843e-04	k: 1207	n:2030000
Cons ci ratio: 1.223989e-03	ci left: 8.342721e-01	ci right 8.352944e-01	k: 1694611	n:2030000
KS ci ratio: 2.359402e-01	ci left: 1.199294e-04	ci right 1.524607e-04	k: 275	n:2030000
NCOA6   2030000 perm   2236 sec   (908 perm/sec)   p_kst 1.354680e-04   p_cons 8.347837e-01   p_joint 5.945813e-04

Joint ci ratio: 1.186472e-01	ci left: 5.030684e-04	ci right 5.669908e-04	k: 1090	n:2040000
Cons ci ratio: 1.221044e-03	ci left: 8.342602e-01	ci right 8.352800e-01	k: 1702932	n:2040000
KS ci ratio: 2.359403e-01	ci left: 1.193416e-04	ci right 1.517134e-04	k: 275	n:2040000
NCOA6   2040000 perm   2254 sec   (905 perm/sec)   p_kst 1.348039e-04   p_cons 8.347706e-01   p_joint 5.343137e-04

Joint ci ratio: 1.071713e-01	ci left: 6.172361e-04	ci right 6.876016e-04	k: 1336	n:2050000
Cons ci ratio: 1.218001e-03	ci left: 8.342753e-01	ci right 8.352925e-01	k: 1711308	n:2050000
KS ci ratio: 2.417020e-01	ci left: 1.127973e-04	ci right 1.442532e-04	k: 262	n:2050000
NCOA6   2050000 perm   2274 sec   (902 perm/sec)   p_kst 1.278049e-04   p_cons 8.347844e-01   p_joint 6.517073e-04

Joint ci ratio: 1.069317e-01	ci left: 6.170744e-04	ci right 6.872543e-04	k: 1342	n:2060000
Cons ci ratio: 1.215028e-03	ci left: 8.342795e-01	ci right 8.352943e-01	k: 1719662	n:2060000
KS ci ratio: 2.394365e-01	ci left: 1.145306e-04	ci right 1.461262e-04	k: 267	n:2060000
NCOA6   2060000 perm   2293 sec   (899 perm/sec)   p_kst 1.296117e-04   p_cons 8.347874e-01   p_joint 6.514563e-04

Joint ci ratio: 1.101813e-01	ci left: 5.774345e-04	ci right 6.452313e-04	k: 1264	n:2070000
Cons ci ratio: 1.212022e-03	ci left: 8.342963e-01	ci right 8.353086e-01	k: 1728042	n:2070000
KS ci ratio: 2.389910e-01	ci left: 1.144315e-04	ci right 1.459322e-04	k: 268	n:2070000
NCOA6   2070000 perm   2312 sec   (895 perm/sec)   p_kst 1.294686e-04   p_cons 8.348029e-01   p_joint 6.106280e-04

Joint ci ratio: 1.099642e-01	ci left: 5.769960e-04	ci right 6.445993e-04	k: 1269	n:2080000
Cons ci ratio: 1.209050e-03	ci left: 8.343100e-01	ci right 8.353198e-01	k: 1736416	n:2080000
KS ci ratio: 2.381075e-01	ci left: 1.147854e-04	ci right 1.462495e-04	k: 270	n:2080000
NCOA6   2080000 perm   2331 sec   (892 perm/sec)   p_kst 1.298077e-04   p_cons 8.348154e-01   p_joint 6.100962e-04

Joint ci ratio: 1.096624e-01	ci left: 5.774925e-04	ci right 6.449563e-04	k: 1276	n:2090000
Cons ci ratio: 1.206064e-03	ci left: 8.343318e-01	ci right 8.353391e-01	k: 1744807	n:2090000
KS ci ratio: 2.376694e-01	ci left: 1.146861e-04	ci right 1.460567e-04	k: 271	n:2090000
NCOA6   2090000 perm   2350 sec   (889 perm/sec)   p_kst 1.296651e-04   p_cons 8.348359e-01   p_joint 6.105263e-04

Joint ci ratio: 1.094911e-01	ci left: 5.765951e-04	ci right 6.438420e-04	k: 1280	n:2100000
Cons ci ratio: 1.203117e-03	ci left: 8.343495e-01	ci right 8.353544e-01	k: 1753190	n:2100000
KS ci ratio: 2.376695e-01	ci left: 1.141400e-04	ci right 1.453612e-04	k: 271	n:2100000
NCOA6   2100000 perm   2370 sec   (886 perm/sec)   p_kst 1.290476e-04   p_cons 8.348524e-01   p_joint 6.095238e-04

Joint ci ratio: 1.091932e-01	ci left: 5.770893e-04	ci right 6.441989e-04	k: 1287	n:2110000
Cons ci ratio: 1.200204e-03	ci left: 8.343642e-01	ci right 8.353666e-01	k: 1761567	n:2110000
KS ci ratio: 2.368004e-01	ci left: 1.144906e-04	ci right 1.456764e-04	k: 273	n:2110000
NCOA6   2110000 perm   2389 sec   (883 perm/sec)   p_kst 1.293839e-04   p_cons 8.348659e-01   p_joint 6.099526e-04

Joint ci ratio: 1.089819e-01	ci left: 5.766613e-04	ci right 6.435830e-04	k: 1292	n:2120000
Cons ci ratio: 1.197320e-03	ci left: 8.343769e-01	ci right 8.353769e-01	k: 1769940	n:2120000
KS ci ratio: 2.368005e-01	ci left: 1.139505e-04	ci right 1.449892e-04	k: 273	n:2120000
NCOA6   2120000 perm   2409 sec   (880 perm/sec)   p_kst 1.287736e-04   p_cons 8.348774e-01   p_joint 6.094340e-04

Joint ci ratio: 1.085211e-01	ci left: 5.789778e-04	ci right 6.458662e-04	k: 1303	n:2130000
Cons ci ratio: 1.194510e-03	ci left: 8.343772e-01	ci right 8.353749e-01	k: 1778287	n:2130000
KS ci ratio: 2.350906e-01	ci left: 1.151825e-04	ci right 1.462973e-04	k: 277	n:2130000
NCOA6   2130000 perm   2428 sec   (877 perm/sec)   p_kst 1.300469e-04   p_cons 8.348765e-01   p_joint 6.117371e-04

Joint ci ratio: 1.096632e-01	ci left: 5.639995e-04	ci right 6.298875e-04	k: 1276	n:2140000
Cons ci ratio: 1.191721e-03	ci left: 8.343771e-01	ci right 8.353725e-01	k: 1786633	n:2140000
KS ci ratio: 2.346689e-01	ci left: 1.150840e-04	ci right 1.461084e-04	k: 278	n:2140000
NCOA6   2140000 perm   2448 sec   (874 perm/sec)   p_kst 1.299065e-04   p_cons 8.348752e-01   p_joint 5.962617e-04

Joint ci ratio: 1.093212e-01	ci left: 5.649953e-04	ci right 6.307805e-04	k: 1284	n:2150000
Cons ci ratio: 1.189002e-03	ci left: 8.343653e-01	ci right 8.353584e-01	k: 1794954	n:2150000
KS ci ratio: 2.338323e-01	ci left: 1.154244e-04	ci right 1.464135e-04	k: 280	n:2150000
NCOA6   2150000 perm   2467 sec   (871 perm/sec)   p_kst 1.302326e-04   p_cons 8.348623e-01   p_joint 5.972093e-04

Joint ci ratio: 1.091092e-01	ci left: 5.646312e-04	ci right 6.302383e-04	k: 1289	n:2160000
Cons ci ratio: 1.186222e-03	ci left: 8.343722e-01	ci right 8.353630e-01	k: 1803315	n:2160000
KS ci ratio: 2.334173e-01	ci left: 1.153259e-04	ci right 1.462257e-04	k: 281	n:2160000
NCOA6   2160000 perm   2487 sec   (868 perm/sec)   p_kst 1.300926e-04   p_cons 8.348681e-01   p_joint 5.967593e-04

Joint ci ratio: 1.087305e-01	ci left: 5.660637e-04	ci right 6.315943e-04	k: 1298	n:2170000
Cons ci ratio: 1.183501e-03	ci left: 8.343698e-01	ci right 8.353583e-01	k: 1811656	n:2170000
KS ci ratio: 2.325939e-01	ci left: 1.156623e-04	ci right 1.465272e-04	k: 283	n:2170000
NCOA6   2170000 perm   2507 sec   (866 perm/sec)   p_kst 1.304147e-04   p_cons 8.348645e-01   p_joint 5.981567e-04

Joint ci ratio: 1.086470e-01	ci left: 5.643595e-04	ci right 6.296395e-04	k: 1300	n:2180000
Cons ci ratio: 1.180847e-03	ci left: 8.343560e-01	ci right 8.353422e-01	k: 1819972	n:2180000
KS ci ratio: 2.325940e-01	ci left: 1.151317e-04	ci right 1.458551e-04	k: 283	n:2180000
NCOA6   2180000 perm   2527 sec   (863 perm/sec)   p_kst 1.298165e-04   p_cons 8.348495e-01   p_joint 5.963303e-04

Joint ci ratio: 1.090674e-01	ci left: 5.573405e-04	ci right 6.220741e-04	k: 1290	n:2190000
Cons ci ratio: 1.178163e-03	ci left: 8.343537e-01	ci right 8.353377e-01	k: 1828313	n:2190000
KS ci ratio: 2.321856e-01	ci left: 1.150361e-04	ci right 1.456722e-04	k: 284	n:2190000
NCOA6   2190000 perm   2547 sec   (860 perm/sec)   p_kst 1.296804e-04   p_cons 8.348461e-01   p_joint 5.890411e-04

Joint ci ratio: 1.087728e-01	ci left: 5.579023e-04	ci right 6.225149e-04	k: 1297	n:2200000
Cons ci ratio: 1.175464e-03	ci left: 8.343591e-01	ci right 8.353409e-01	k: 1836671	n:2200000
KS ci ratio: 2.317793e-01	ci left: 1.149413e-04	ci right 1.454910e-04	k: 285	n:2200000
NCOA6   2200000 perm   2567 sec   (857 perm/sec)   p_kst 1.295455e-04   p_cons 8.348505e-01   p_joint 5.895455e-04

Joint ci ratio: 1.085223e-01	ci left: 5.580190e-04	ci right 6.224868e-04	k: 1303	n:2210000
Cons ci ratio: 1.172735e-03	ci left: 8.343759e-01	ci right 8.353554e-01	k: 1845054	n:2210000
KS ci ratio: 2.309731e-01	ci left: 1.152737e-04	ci right 1.457900e-04	k: 287	n:2210000
NCOA6   2210000 perm   2587 sec   (854 perm/sec)   p_kst 1.298643e-04   p_cons 8.348661e-01   p_joint 5.895928e-04

Joint ci ratio: 1.082735e-01	ci left: 5.581349e-04	ci right 6.224588e-04	k: 1309	n:2220000
Cons ci ratio: 1.169960e-03	ci left: 8.344078e-01	ci right 8.353850e-01	k: 1853471	n:2220000
KS ci ratio: 2.301752e-01	ci left: 1.156034e-04	ci right 1.460861e-04	k: 289	n:2220000
NCOA6   2220000 perm   2608 sec   (851 perm/sec)   p_kst 1.301802e-04   p_cons 8.348968e-01   p_joint 5.896396e-04

Joint ci ratio: 1.094503e-01	ci left: 5.434176e-04	ci right 6.067699e-04	k: 1281	n:2230000
Cons ci ratio: 1.167286e-03	ci left: 8.344201e-01	ci right 8.353951e-01	k: 1861845	n:2230000
KS ci ratio: 2.289937e-01	ci left: 1.163529e-04	ci right 1.468536e-04	k: 292	n:2230000
NCOA6   2230000 perm   2628 sec   (849 perm/sec)   p_kst 1.309417e-04   p_cons 8.349081e-01   p_joint 5.744395e-04

Joint ci ratio: 1.093226e-01	ci left: 5.422943e-04	ci right 6.054371e-04	k: 1284	n:2240000
Cons ci ratio: 1.164604e-03	ci left: 8.344386e-01	ci right 8.354114e-01	k: 1870233	n:2240000
KS ci ratio: 2.286040e-01	ci left: 1.162543e-04	ci right 1.466699e-04	k: 293	n:2240000
NCOA6   2240000 perm   2649 sec   (846 perm/sec)   p_kst 1.308036e-04   p_cons 8.349254e-01   p_joint 5.732143e-04

Joint ci ratio: 1.093227e-01	ci left: 5.398840e-04	ci right 6.027463e-04	k: 1284	n:2250000
Cons ci ratio: 1.162134e-03	ci left: 8.344111e-01	ci right 8.353818e-01	k: 1878518	n:2250000
KS ci ratio: 2.286041e-01	ci left: 1.157376e-04	ci right 1.460181e-04	k: 293	n:2250000
NCOA6   2250000 perm   2669 sec   (843 perm/sec)   p_kst 1.302222e-04   p_cons 8.348969e-01   p_joint 5.706667e-04

Joint ci ratio: 1.091106e-01	ci left: 5.396471e-04	ci right 6.023521e-04	k: 1289	n:2260000
Cons ci ratio: 1.159541e-03	ci left: 8.344166e-01	ci right 8.353852e-01	k: 1886877	n:2260000
KS ci ratio: 2.286041e-01	ci left: 1.152255e-04	ci right 1.453720e-04	k: 293	n:2260000
NCOA6   2260000 perm   2690 sec   (840 perm/sec)   p_kst 1.296460e-04   p_cons 8.349013e-01   p_joint 5.703540e-04

Joint ci ratio: 1.104906e-01	ci left: 5.235598e-04	ci right 5.852149e-04	k: 1257	n:2270000
Cons ci ratio: 1.157033e-03	ci left: 8.344062e-01	ci right 8.353726e-01	k: 1895200	n:2270000
KS ci ratio: 2.270645e-01	ci left: 1.163794e-04	ci right 1.465941e-04	k: 297	n:2270000
NCOA6   2270000 perm   2711 sec   (837 perm/sec)   p_kst 1.308370e-04   p_cons 8.348899e-01   p_joint 5.537445e-04

Joint ci ratio: 1.104468e-01	ci left: 5.216899e-04	ci right 5.830990e-04	k: 1258	n:2280000
Cons ci ratio: 1.154558e-03	ci left: 8.343915e-01	ci right 8.353559e-01	k: 1903513	n:2280000
KS ci ratio: 2.270646e-01	ci left: 1.158690e-04	ci right 1.459511e-04	k: 297	n:2280000
NCOA6   2280000 perm   2731 sec   (835 perm/sec)   p_kst 1.302632e-04   p_cons 8.348741e-01   p_joint 5.517544e-04

Joint ci ratio: 1.099673e-01	ci left: 5.240829e-04	ci right 5.854885e-04	k: 1269	n:2290000
Cons ci ratio: 1.152009e-03	ci left: 8.343988e-01	ci right 8.353610e-01	k: 1911876	n:2290000
KS ci ratio: 2.266846e-01	ci left: 1.157749e-04	ci right 1.457752e-04	k: 298	n:2290000
NCOA6   2290000 perm   2754 sec   (832 perm/sec)   p_kst 1.301310e-04   p_cons 8.348803e-01   p_joint 5.541485e-04

Joint ci ratio: 1.096655e-01	ci left: 5.247642e-04	ci right 5.860699e-04	k: 1276	n:2300000
Cons ci ratio: 1.149467e-03	ci left: 8.344082e-01	ci right 8.353683e-01	k: 1920244	n:2300000
KS ci ratio: 2.255558e-01	ci left: 1.165020e-04	ci right 1.465195e-04	k: 301	n:2300000
NCOA6   2300000 perm   2774 sec   (829 perm/sec)   p_kst 1.308696e-04   p_cons 8.348887e-01   p_joint 5.547826e-04

Joint ci ratio: 1.094942e-01	ci left: 5.241766e-04	ci right 5.853119e-04	k: 1280	n:2310000
Cons ci ratio: 1.147032e-03	ci left: 8.343959e-01	ci right 8.353539e-01	k: 1928562	n:2310000
KS ci ratio: 2.251833e-01	ci left: 1.164061e-04	ci right 1.463426e-04	k: 302	n:2310000
NCOA6   2310000 perm   2795 sec   (827 perm/sec)   p_kst 1.307359e-04   p_cons 8.348753e-01   p_joint 5.541126e-04

Joint ci ratio: 1.055680e-01	ci left: 5.626041e-04	ci right 6.257223e-04	k: 1377	n:2320000
Cons ci ratio: 1.163215e-03	ci left: 8.298850e-01	ci right 8.308513e-01	k: 1926455	n:2320000
KS ci ratio: 2.248126e-01	ci left: 1.163111e-04	ci right 1.461671e-04	k: 303	n:2320000
NCOA6   2320000 perm   2816 sec   (824 perm/sec)   p_kst 1.306034e-04   p_cons 8.303685e-01   p_joint 5.935345e-04

Joint ci ratio: 1.053770e-01	ci left: 5.622788e-04	ci right 6.252393e-04	k: 1382	n:2330000
Cons ci ratio: 1.160675e-03	ci left: 8.298960e-01	ci right 8.308602e-01	k: 1934782	n:2330000
KS ci ratio: 2.248127e-01	ci left: 1.158119e-04	ci right 1.455397e-04	k: 303	n:2330000
NCOA6   2330000 perm   2839 sec   (821 perm/sec)   p_kst 1.300429e-04   p_cons 8.303785e-01   p_joint 5.931330e-04

Joint ci ratio: 1.051492e-01	ci left: 5.623725e-04	ci right 6.251989e-04	k: 1388	n:2340000
Cons ci ratio: 1.158295e-03	ci left: 8.298719e-01	ci right 8.308341e-01	k: 1943027	n:2340000
KS ci ratio: 2.248128e-01	ci left: 1.153170e-04	ci right 1.449178e-04	k: 303	n:2340000
NCOA6   2340000 perm   2866 sec   (817 perm/sec)   p_kst 1.294872e-04   p_cons 8.303534e-01   p_joint 5.931624e-04

Joint ci ratio: 1.049228e-01	ci left: 5.624655e-04	ci right 6.251588e-04	k: 1394	n:2350000
Cons ci ratio: 1.155866e-03	ci left: 8.298638e-01	ci right 8.308239e-01	k: 1951309	n:2350000
KS ci ratio: 2.240768e-01	ci left: 1.156295e-04	ci right 1.451999e-04	k: 305	n:2350000
NCOA6   2350000 perm   2887 sec   (814 perm/sec)   p_kst 1.297872e-04   p_cons 8.303443e-01   p_joint 5.931915e-04

Joint ci ratio: 1.020016e-01	ci left: 5.935167e-04	ci right 6.577189e-04	k: 1475	n:2360000
Cons ci ratio: 1.153481e-03	ci left: 8.298485e-01	ci right 8.308066e-01	k: 1959574	n:2360000
KS ci ratio: 2.233481e-01	ci left: 1.159395e-04	ci right 1.454795e-04	k: 307	n:2360000
NCOA6   2360000 perm   2909 sec   (811 perm/sec)   p_kst 1.300847e-04   p_cons 8.303280e-01   p_joint 6.250000e-04

Joint ci ratio: 1.018982e-01	ci left: 5.922460e-04	ci right 6.562418e-04	k: 1478	n:2370000
Cons ci ratio: 1.151001e-03	ci left: 8.298604e-01	ci right 8.308165e-01	k: 1967903	n:2370000
KS ci ratio: 2.233482e-01	ci left: 1.154503e-04	ci right 1.448657e-04	k: 307	n:2370000
NCOA6   2370000 perm   2930 sec   (809 perm/sec)   p_kst 1.295359e-04   p_cons 8.303388e-01   p_joint 6.236287e-04

Joint ci ratio: 1.017607e-01	ci left: 5.913954e-04	ci right 6.552080e-04	k: 1482	n:2380000
Cons ci ratio: 1.148600e-03	ci left: 8.298566e-01	ci right 8.308107e-01	k: 1976195	n:2380000
KS ci ratio: 2.229865e-01	ci left: 1.153619e-04	ci right 1.447006e-04	k: 308	n:2380000
NCOA6   2380000 perm   2952 sec   (806 perm/sec)   p_kst 1.294118e-04   p_cons 8.303340e-01   p_joint 6.226891e-04

Joint ci ratio: 1.016238e-01	ci left: 5.905520e-04	ci right 6.541827e-04	k: 1486	n:2390000
Cons ci ratio: 1.146256e-03	ci left: 8.298423e-01	ci right 8.307945e-01	k: 1984462	n:2390000
KS ci ratio: 2.226266e-01	ci left: 1.152743e-04	ci right 1.445369e-04	k: 309	n:2390000
NCOA6   2390000 perm   2974 sec   (804 perm/sec)   p_kst 1.292887e-04   p_cons 8.303188e-01   p_joint 6.217573e-04

Joint ci ratio: 1.018986e-01	ci left: 5.848428e-04	ci right 6.480389e-04	k: 1478	n:2400000
Cons ci ratio: 1.143942e-03	ci left: 8.298245e-01	ci right 8.307747e-01	k: 1992720	n:2400000
KS ci ratio: 2.219118e-01	ci left: 1.155809e-04	ci right 1.448143e-04	k: 311	n:2400000
NCOA6   2400000 perm   2996 sec   (801 perm/sec)   p_kst 1.295833e-04   p_cons 8.303000e-01   p_joint 6.158333e-04

Joint ci ratio: 1.014535e-01	ci left: 5.876731e-04	ci right 6.508812e-04	k: 1491	n:2410000
Cons ci ratio: 1.141637e-03	ci left: 8.298080e-01	ci right 8.307563e-01	k: 2000981	n:2410000
KS ci ratio: 2.201546e-01	ci left: 1.170612e-04	ci right 1.464028e-04	k: 316	n:2410000
NCOA6   2410000 perm   3017 sec   (799 perm/sec)   p_kst 1.311203e-04   p_cons 8.302826e-01   p_joint 6.186722e-04

Joint ci ratio: 1.012840e-01	ci left: 5.872584e-04	ci right 6.503101e-04	k: 1496	n:2420000
Cons ci ratio: 1.139330e-03	ci left: 8.297954e-01	ci right 8.307418e-01	k: 2009251	n:2420000
KS ci ratio: 2.198082e-01	ci left: 1.169679e-04	ci right 1.462338e-04	k: 317	n:2420000
NCOA6   2420000 perm   3039 sec   (796 perm/sec)   p_kst 1.309917e-04   p_cons 8.302690e-01   p_joint 6.181818e-04

Joint ci ratio: 1.010480e-01	ci left: 5.876495e-04	ci right 6.505875e-04	k: 1503	n:2430000
Cons ci ratio: 1.136968e-03	ci left: 8.298003e-01	ci right 8.307446e-01	k: 2017563	n:2430000
KS ci ratio: 2.184385e-01	ci left: 1.180423e-04	ci right 1.473683e-04	k: 321	n:2430000
NCOA6   2430000 perm   3061 sec   (794 perm/sec)   p_kst 1.320988e-04   p_cons 8.302728e-01   p_joint 6.185185e-04

Joint ci ratio: 1.008470e-01	ci left: 5.876381e-04	ci right 6.504422e-04	k: 1509	n:2440000
Cons ci ratio: 1.134612e-03	ci left: 8.298071e-01	ci right 8.307495e-01	k: 2025880	n:2440000
KS ci ratio: 2.174280e-01	ci left: 1.187209e-04	ci right 1.480608e-04	k: 324	n:2440000
NCOA6   2440000 perm   3083 sec   (791 perm/sec)   p_kst 1.327869e-04   p_cons 8.302787e-01   p_joint 6.184426e-04

Joint ci ratio: 1.006805e-01	ci left: 5.872289e-04	ci right 6.498796e-04	k: 1514	n:2450000
Cons ci ratio: 1.132291e-03	ci left: 8.298089e-01	ci right 8.307495e-01	k: 2034185	n:2450000
KS ci ratio: 2.167620e-01	ci left: 1.190083e-04	ci right 1.483171e-04	k: 326	n:2450000
NCOA6   2450000 perm   3105 sec   (789 perm/sec)   p_kst 1.330612e-04   p_cons 8.302796e-01   p_joint 6.179592e-04

Joint ci ratio: 1.005810e-01	ci left: 5.860306e-04	ci right 6.484880e-04	k: 1517	n:2460000
Cons ci ratio: 1.129946e-03	ci left: 8.298202e-01	ci right 8.307587e-01	k: 2042513	n:2460000
KS ci ratio: 2.164313e-01	ci left: 1.189090e-04	ci right 1.481427e-04	k: 327	n:2460000
NCOA6   2460000 perm   3127 sec   (787 perm/sec)   p_kst 1.329268e-04   p_cons 8.302898e-01   p_joint 6.166667e-04

Joint ci ratio: 1.004158e-01	ci left: 5.856314e-04	ci right 6.479377e-04	k: 1522	n:2470000
Cons ci ratio: 1.127719e-03	ci left: 8.298054e-01	ci right 8.307421e-01	k: 2050777	n:2470000
KS ci ratio: 2.161022e-01	ci left: 1.188105e-04	ci right 1.479697e-04	k: 328	n:2470000
NCOA6   2470000 perm   3149 sec   (784 perm/sec)   p_kst 1.327935e-04   p_cons 8.302741e-01   p_joint 6.161943e-04

Joint ci ratio: 1.000877e-01	ci left: 5.872012e-04	ci right 6.494583e-04	k: 1532	n:2480000
Cons ci ratio: 1.125561e-03	ci left: 8.297769e-01	ci right 8.307118e-01	k: 2059007	n:2480000
KS ci ratio: 2.141580e-01	ci left: 1.206205e-04	ci right 1.499226e-04	k: 334	n:2480000
NCOA6   2480000 perm   3171 sec   (782 perm/sec)   p_kst 1.346774e-04   p_cons 8.302448e-01   p_joint 6.177419e-04

Joint ci ratio: 9.998996e-02	ci left: 5.860176e-04	ci right 6.480851e-04	k: 1535	n:2490000
Cons ci ratio: 1.123261e-03	ci left: 8.297873e-01	ci right 8.307203e-01	k: 2067333	n:2490000
KS ci ratio: 2.135215e-01	ci left: 1.208962e-04	ci right 1.501666e-04	k: 336	n:2490000
NCOA6   2490000 perm   3193 sec   (780 perm/sec)   p_kst 1.349398e-04   p_cons 8.302542e-01   p_joint 6.164659e-04

Joint ci ratio: 9.976287e-02	ci left: 5.864036e-04	ci right 6.483626e-04	k: 1542	n:2500000
Cons ci ratio: 1.121005e-03	ci left: 8.297901e-01	ci right 8.307212e-01	k: 2075640	n:2500000
KS ci ratio: 2.125773e-01	ci left: 1.215486e-04	ci right 1.508299e-04	k: 339	n:2500000
NCOA6   2500000 perm   3216 sec   (777 perm/sec)   p_kst 1.356000e-04   p_cons 8.302560e-01   p_joint 6.168000e-04

Joint ci ratio: 9.960165e-02	ci left: 5.860097e-04	ci right 6.478212e-04	k: 1547	n:2510000
Cons ci ratio: 1.118778e-03	ci left: 8.297888e-01	ci right 8.307180e-01	k: 2083937	n:2510000
KS ci ratio: 2.116456e-01	ci left: 1.221961e-04	ci right 1.514876e-04	k: 342	n:2510000
NCOA6   2510000 perm   3239 sec   (775 perm/sec)   p_kst 1.362550e-04   p_cons 8.302538e-01   p_joint 6.163347e-04

Joint ci ratio: 9.931331e-02	ci left: 5.871669e-04	ci right 6.489107e-04	k: 1556	n:2520000
Cons ci ratio: 1.116587e-03	ci left: 8.297819e-01	ci right 8.307094e-01	k: 2092220	n:2520000
KS ci ratio: 2.104221e-01	ci left: 1.232146e-04	ci right 1.525575e-04	k: 346	n:2520000
NCOA6   2520000 perm   3261 sec   (773 perm/sec)   p_kst 1.373016e-04   p_cons 8.302460e-01   p_joint 6.174603e-04

Joint ci ratio: 9.909080e-02	ci left: 5.875442e-04	ci right 6.491812e-04	k: 1563	n:2530000
Cons ci ratio: 1.114357e-03	ci left: 8.297882e-01	ci right 8.307138e-01	k: 2100536	n:2530000
KS ci ratio: 2.098183e-01	ci left: 1.234765e-04	ci right 1.527865e-04	k: 348	n:2530000
NCOA6   2530000 perm   3284 sec   (770 perm/sec)   p_kst 1.375494e-04   p_cons 8.302514e-01   p_joint 6.177866e-04

Joint ci ratio: 9.865010e-02	ci left: 5.906066e-04	ci right 6.522734e-04	k: 1577	n:2540000
Cons ci ratio: 1.112171e-03	ci left: 8.297866e-01	ci right 8.307103e-01	k: 2108832	n:2540000
KS ci ratio: 2.089222e-01	ci left: 1.241096e-04	ci right 1.534280e-04	k: 351	n:2540000
NCOA6   2540000 perm   3306 sec   (768 perm/sec)   p_kst 1.381890e-04   p_cons 8.302488e-01   p_joint 6.208661e-04

Joint ci ratio: 9.858773e-02	ci left: 5.890555e-04	ci right 6.505192e-04	k: 1579	n:2550000
Cons ci ratio: 1.109935e-03	ci left: 8.298010e-01	ci right 8.307229e-01	k: 2117169	n:2550000
KS ci ratio: 2.086261e-01	ci left: 1.239945e-04	ci right 1.532389e-04	k: 352	n:2550000
NCOA6   2550000 perm   3329 sec   (766 perm/sec)   p_kst 1.380392e-04   p_cons 8.302624e-01   p_joint 6.192157e-04

Joint ci ratio: 9.843213e-02	ci left: 5.886595e-04	ci right 6.499793e-04	k: 1584	n:2560000
Cons ci ratio: 1.107803e-03	ci left: 8.297923e-01	ci right 8.307124e-01	k: 2125447	n:2560000
KS ci ratio: 2.086261e-01	ci left: 1.235102e-04	ci right 1.526403e-04	k: 352	n:2560000
NCOA6   2560000 perm   3352 sec   (764 perm/sec)   p_kst 1.375000e-04   p_cons 8.302527e-01   p_joint 6.187500e-04

Joint ci ratio: 9.950594e-02	ci left: 5.734666e-04	ci right 6.338935e-04	k: 1550	n:2570000
Cons ci ratio: 1.105672e-03	ci left: 8.297864e-01	ci right 8.307047e-01	k: 2133732	n:2570000
KS ci ratio: 2.077452e-01	ci left: 1.241361e-04	ci right 1.532745e-04	k: 355	n:2570000
NCOA6   2570000 perm   3375 sec   (761 perm/sec)   p_kst 1.381323e-04   p_cons 8.302459e-01   p_joint 6.031128e-04

Joint ci ratio: 9.934595e-02	ci left: 5.731337e-04	ci right 6.334228e-04	k: 1555	n:2580000
Cons ci ratio: 1.103489e-03	ci left: 8.297972e-01	ci right 8.307137e-01	k: 2142060	n:2580000
KS ci ratio: 2.074540e-01	ci left: 1.240224e-04	ci right 1.530881e-04	k: 356	n:2580000
NCOA6   2580000 perm   3398 sec   (759 perm/sec)   p_kst 1.379845e-04   p_cons 8.302558e-01   p_joint 6.027132e-04

Joint ci ratio: 1.003843e-01	ci left: 5.588739e-04	ci right 6.183137e-04	k: 1523	n:2590000
Cons ci ratio: 1.101360e-03	ci left: 8.297971e-01	ci right 8.307118e-01	k: 2150360	n:2590000
KS ci ratio: 2.074541e-01	ci left: 1.235435e-04	ci right 1.524970e-04	k: 356	n:2590000
NCOA6   2590000 perm   3422 sec   (757 perm/sec)   p_kst 1.374517e-04   p_cons 8.302548e-01   p_joint 5.880309e-04

Joint ci ratio: 1.003515e-01	ci left: 5.570994e-04	ci right 6.163298e-04	k: 1524	n:2600000
Cons ci ratio: 1.099296e-03	ci left: 8.297835e-01	ci right 8.306965e-01	k: 2158625	n:2600000
KS ci ratio: 2.074541e-01	ci left: 1.230683e-04	ci right 1.519105e-04	k: 356	n:2600000
NCOA6   2600000 perm   3445 sec   (755 perm/sec)   p_kst 1.369231e-04   p_cons 8.302404e-01   p_joint 5.861538e-04

Joint ci ratio: 1.001546e-01	ci left: 5.572061e-04	ci right 6.163249e-04	k: 1530	n:2610000
Cons ci ratio: 1.097137e-03	ci left: 8.297976e-01	ci right 8.307089e-01	k: 2166962	n:2610000
KS ci ratio: 2.063015e-01	ci left: 1.240500e-04	ci right 1.529403e-04	k: 360	n:2610000
NCOA6   2610000 perm   3469 sec   (752 perm/sec)   p_kst 1.379310e-04   p_cons 8.302536e-01   p_joint 5.862069e-04

Joint ci ratio: 1.000241e-01	ci left: 5.565678e-04	ci right 6.155374e-04	k: 1534	n:2620000
Cons ci ratio: 1.095064e-03	ci left: 8.297926e-01	ci right 8.307021e-01	k: 2175249	n:2620000
KS ci ratio: 2.063015e-01	ci left: 1.235765e-04	ci right 1.523566e-04	k: 360	n:2620000
NCOA6   2620000 perm   3492 sec   (750 perm/sec)   p_kst 1.374046e-04   p_cons 8.302477e-01   p_joint 5.854962e-04

Joint ci ratio: 9.982915e-02	ci left: 5.566760e-04	ci right 6.155353e-04	k: 1540	n:2630000
Cons ci ratio: 1.093075e-03	ci left: 8.297689e-01	ci right 8.306768e-01	k: 2183487	n:2630000
KS ci ratio: 2.060164e-01	ci left: 1.234673e-04	ci right 1.521771e-04	k: 361	n:2630000
NCOA6   2630000 perm   3515 sec   (748 perm/sec)   p_kst 1.372624e-04   p_cons 8.302232e-01   p_joint 5.855513e-04

Joint ci ratio: 9.957099e-02	ci left: 5.575221e-04	ci right 6.163096e-04	k: 1548	n:2640000
Cons ci ratio: 1.091074e-03	ci left: 8.297515e-01	ci right 8.306577e-01	k: 2191741	n:2640000
KS ci ratio: 2.060165e-01	ci left: 1.229996e-04	ci right 1.516007e-04	k: 361	n:2640000
NCOA6   2640000 perm   3539 sec   (746 perm/sec)   p_kst 1.367424e-04   p_cons 8.302049e-01   p_joint 5.863636e-04

Joint ci ratio: 9.944271e-02	ci left: 5.568901e-04	ci right 6.155309e-04	k: 1552	n:2650000
Cons ci ratio: 1.088977e-03	ci left: 8.297618e-01	ci right 8.306662e-01	k: 2200068	n:2650000
KS ci ratio: 2.054497e-01	ci left: 1.232513e-04	ci right 1.518222e-04	k: 363	n:2650000
NCOA6   2650000 perm   3563 sec   (744 perm/sec)   p_kst 1.369811e-04   p_cons 8.302143e-01   p_joint 5.856604e-04

Joint ci ratio: 9.934686e-02	ci left: 5.558963e-04	ci right 6.143727e-04	k: 1555	n:2660000
Cons ci ratio: 1.086988e-03	ci left: 8.297471e-01	ci right 8.306499e-01	k: 2208329	n:2660000
KS ci ratio: 2.054497e-01	ci left: 1.227879e-04	ci right 1.512514e-04	k: 363	n:2660000
NCOA6   2660000 perm   3587 sec   (742 perm/sec)   p_kst 1.364662e-04   p_cons 8.301989e-01   p_joint 5.845865e-04

Joint ci ratio: 9.915586e-02	ci left: 5.560057e-04	ci right 6.143747e-04	k: 1561	n:2670000
Cons ci ratio: 1.084890e-03	ci left: 8.297637e-01	ci right 8.306648e-01	k: 2216673	n:2670000
KS ci ratio: 2.048876e-01	ci left: 1.230386e-04	ci right 1.514724e-04	k: 365	n:2670000
NCOA6   2670000 perm   3612 sec   (739 perm/sec)   p_kst 1.367041e-04   p_cons 8.302146e-01   p_joint 5.846442e-04

Joint ci ratio: 9.902918e-02	ci left: 5.553866e-04	ci right 6.136117e-04	k: 1565	n:2680000
Cons ci ratio: 1.082881e-03	ci left: 8.297600e-01	ci right 8.306594e-01	k: 2224963	n:2680000
KS ci ratio: 2.048877e-01	ci left: 1.225795e-04	ci right 1.509072e-04	k: 365	n:2680000
NCOA6   2680000 perm   3636 sec   (737 perm/sec)   p_kst 1.361940e-04   p_cons 8.302101e-01   p_joint 5.839552e-04

Joint ci ratio: 9.877716e-02	ci left: 5.562224e-04	ci right 6.143782e-04	k: 1573	n:2690000
Cons ci ratio: 1.080785e-03	ci left: 8.297820e-01	ci right 8.306797e-01	k: 2233322	n:2690000
KS ci ratio: 2.040530e-01	ci left: 1.231820e-04	ci right 1.515185e-04	k: 368	n:2690000
NCOA6   2690000 perm   3660 sec   (735 perm/sec)   p_kst 1.368030e-04   p_cons 8.302312e-01   p_joint 5.847584e-04

Joint ci ratio: 9.855822e-02	ci left: 5.566909e-04	ci right 6.147592e-04	k: 1580	n:2700000
Cons ci ratio: 1.078858e-03	ci left: 8.297631e-01	ci right 8.306591e-01	k: 2241571	n:2700000
KS ci ratio: 2.040531e-01	ci left: 1.227257e-04	ci right 1.509573e-04	k: 368	n:2700000
NCOA6   2700000 perm   3684 sec   (733 perm/sec)   p_kst 1.362963e-04   p_cons 8.302115e-01   p_joint 5.851852e-04

Joint ci ratio: 9.837173e-02	ci left: 5.567962e-04	ci right 6.147593e-04	k: 1586	n:2710000
Cons ci ratio: 1.076865e-03	ci left: 8.297639e-01	ci right 8.306583e-01	k: 2249873	n:2710000
KS ci ratio: 2.032285e-01	ci left: 1.233234e-04	ci right 1.515636e-04	k: 371	n:2710000
NCOA6   2710000 perm   3709 sec   (731 perm/sec)   p_kst 1.369004e-04   p_cons 8.302114e-01   p_joint 5.852399e-04

Joint ci ratio: 9.827894e-02	ci left: 5.558250e-04	ci right 6.136292e-04	k: 1589	n:2720000
Cons ci ratio: 1.074925e-03	ci left: 8.297540e-01	ci right 8.306468e-01	k: 2258146	n:2720000
KS ci ratio: 2.026844e-01	ci left: 1.235680e-04	ci right 1.517790e-04	k: 373	n:2720000
NCOA6   2720000 perm   3734 sec   (728 perm/sec)   p_kst 1.371324e-04   p_cons 8.302007e-01   p_joint 5.841912e-04

Joint ci ratio: 9.809403e-02	ci left: 5.559328e-04	ci right 6.136332e-04	k: 1595	n:2730000
Cons ci ratio: 1.072917e-03	ci left: 8.297647e-01	ci right 8.306558e-01	k: 2266475	n:2730000
KS ci ratio: 2.024140e-01	ci left: 1.234631e-04	ci right 1.516079e-04	k: 374	n:2730000
NCOA6   2730000 perm   3759 sec   (726 perm/sec)   p_kst 1.369963e-04   p_cons 8.302106e-01   p_joint 5.842491e-04

Joint ci ratio: 9.787959e-02	ci left: 5.563960e-04	ci right 6.140110e-04	k: 1602	n:2740000
Cons ci ratio: 1.070921e-03	ci left: 8.297750e-01	ci right 8.306644e-01	k: 2274803	n:2740000
KS ci ratio: 2.018763e-01	ci left: 1.237055e-04	ci right 1.518214e-04	k: 376	n:2740000
NCOA6   2740000 perm   3783 sec   (724 perm/sec)   p_kst 1.372263e-04   p_cons 8.302201e-01   p_joint 5.846715e-04

Joint ci ratio: 9.748497e-02	ci left: 5.589846e-04	ci right 6.166209e-04	k: 1615	n:2750000
Cons ci ratio: 1.068932e-03	ci left: 8.297863e-01	ci right 8.306741e-01	k: 2283134	n:2750000
KS ci ratio: 2.010778e-01	ci left: 1.242915e-04	ci right 1.524152e-04	k: 379	n:2750000
NCOA6   2750000 perm   3808 sec   (722 perm/sec)   p_kst 1.378182e-04   p_cons 8.302305e-01   p_joint 5.872727e-04

Joint ci ratio: 9.727450e-02	ci left: 5.594338e-04	ci right 6.169848e-04	k: 1622	n:2760000
Cons ci ratio: 1.066915e-03	ci left: 8.298080e-01	ci right 8.306942e-01	k: 2291494	n:2760000
KS ci ratio: 2.005507e-01	ci left: 1.245294e-04	ci right 1.526240e-04	k: 381	n:2760000
NCOA6   2760000 perm   3832 sec   (720 perm/sec)   p_kst 1.380435e-04   p_cons 8.302514e-01   p_joint 5.876812e-04

Joint ci ratio: 9.703560e-02	ci left: 5.602321e-04	ci right 6.177156e-04	k: 1630	n:2770000
Cons ci ratio: 1.064945e-03	ci left: 8.298202e-01	ci right 8.307047e-01	k: 2299828	n:2770000
KS ci ratio: 2.005508e-01	ci left: 1.240798e-04	ci right 1.520730e-04	k: 381	n:2770000
NCOA6   2770000 perm   3857 sec   (718 perm/sec)   p_kst 1.375451e-04   p_cons 8.302628e-01   p_joint 5.884477e-04

Joint ci ratio: 9.778849e-02	ci left: 5.494430e-04	ci right 6.062820e-04	k: 1605	n:2780000
Cons ci ratio: 1.063024e-03	ci left: 8.298219e-01	ci right 8.307048e-01	k: 2308133	n:2780000
KS ci ratio: 1.997678e-01	ci left: 1.246585e-04	ci right 1.526591e-04	k: 384	n:2780000
NCOA6   2780000 perm   3882 sec   (716 perm/sec)   p_kst 1.381295e-04   p_cons 8.302637e-01   p_joint 5.773381e-04

Joint ci ratio: 9.896711e-02	ci left: 5.341885e-04	ci right 5.901541e-04	k: 1567	n:2790000
Cons ci ratio: 1.061075e-03	ci left: 8.298339e-01	ci right 8.307152e-01	k: 2316467	n:2790000
KS ci ratio: 1.992509e-01	ci left: 1.248928e-04	ci right 1.528646e-04	k: 386	n:2790000
NCOA6   2790000 perm   3906 sec   (714 perm/sec)   p_kst 1.383513e-04   p_cons 8.302749e-01   p_joint 5.616487e-04

Joint ci ratio: 9.887262e-02	ci left: 5.333256e-04	ci right 5.891443e-04	k: 1570	n:2800000
Cons ci ratio: 1.059129e-03	ci left: 8.298480e-01	ci right 8.307277e-01	k: 2324807	n:2800000
KS ci ratio: 1.989940e-01	ci left: 1.247861e-04	ci right 1.526936e-04	k: 387	n:2800000
NCOA6   2800000 perm   3931 sec   (712 perm/sec)   p_kst 1.382143e-04   p_cons 8.302882e-01   p_joint 5.607143e-04

Joint ci ratio: 9.877839e-02	ci left: 5.324688e-04	ci right 5.881417e-04	k: 1573	n:2810000
Cons ci ratio: 1.057280e-03	ci left: 8.298389e-01	ci right 8.307170e-01	k: 2333082	n:2810000
KS ci ratio: 1.989941e-01	ci left: 1.243420e-04	ci right 1.521502e-04	k: 387	n:2810000
NCOA6   2810000 perm   3956 sec   (710 perm/sec)   p_kst 1.377224e-04   p_cons 8.302783e-01   p_joint 5.597865e-04

Joint ci ratio: 9.859065e-02	ci left: 5.326558e-04	ci right 5.882363e-04	k: 1579	n:2820000
Cons ci ratio: 1.055331e-03	ci left: 8.298589e-01	ci right 8.307355e-01	k: 2341439	n:2820000
KS ci ratio: 1.979761e-01	ci left: 1.252490e-04	ci right 1.530995e-04	k: 391	n:2820000
NCOA6   2820000 perm   3981 sec   (708 perm/sec)   p_kst 1.386525e-04   p_cons 8.302975e-01   p_joint 5.599291e-04

Joint ci ratio: 9.837296e-02	ci left: 5.331862e-04	ci right 5.886921e-04	k: 1586	n:2830000
Cons ci ratio: 1.053455e-03	ci left: 8.298625e-01	ci right 8.307375e-01	k: 2349750	n:2830000
KS ci ratio: 1.977241e-01	ci left: 1.251423e-04	ci right 1.529293e-04	k: 392	n:2830000
NCOA6   2830000 perm   4006 sec   (706 perm/sec)   p_kst 1.385159e-04   p_cons 8.303004e-01   p_joint 5.604240e-04

Joint ci ratio: 9.821836e-02	ci left: 5.330261e-04	ci right 5.884231e-04	k: 1591	n:2840000
Cons ci ratio: 1.051604e-03	ci left: 8.298619e-01	ci right 8.307353e-01	k: 2358049	n:2840000
KS ci ratio: 1.974730e-01	ci left: 1.250363e-04	ci right 1.527603e-04	k: 393	n:2840000
NCOA6   2840000 perm   4031 sec   (705 perm/sec)   p_kst 1.383803e-04   p_cons 8.302989e-01   p_joint 5.602113e-04

Joint ci ratio: 9.178120e-02	ci left: 6.102860e-04	ci right 6.693327e-04	k: 1822	n:2850000
Cons ci ratio: 1.049656e-03	ci left: 8.298897e-01	ci right 8.307616e-01	k: 2366429	n:2850000
KS ci ratio: 1.969737e-01	ci left: 1.252647e-04	ci right 1.529607e-04	k: 395	n:2850000
NCOA6   2850000 perm   4056 sec   (703 perm/sec)   p_kst 1.385965e-04   p_cons 8.303260e-01   p_joint 6.392982e-04

Joint ci ratio: 9.160548e-02	ci left: 6.105436e-04	ci right 6.694960e-04	k: 1829	n:2860000
Cons ci ratio: 1.047859e-03	ci left: 8.298799e-01	ci right 8.307502e-01	k: 2374702	n:2860000
KS ci ratio: 1.967255e-01	ci left: 1.251591e-04	ci right 1.527927e-04	k: 396	n:2860000
NCOA6   2860000 perm   4081 sec   (701 perm/sec)   p_kst 1.384615e-04   p_cons 8.303154e-01   p_joint 6.395105e-04

Joint ci ratio: 9.148061e-02	ci left: 6.101186e-04	ci right 6.689453e-04	k: 1834	n:2870000
Cons ci ratio: 1.046057e-03	ci left: 8.298739e-01	ci right 8.307428e-01	k: 2382986	n:2870000
KS ci ratio: 1.967255e-01	ci left: 1.247230e-04	ci right 1.522604e-04	k: 396	n:2870000
NCOA6   2870000 perm   4105 sec   (699 perm/sec)   p_kst 1.379791e-04   p_cons 8.303087e-01   p_joint 6.390244e-04

Joint ci ratio: 9.440900e-02	ci left: 5.700143e-04	ci right 6.268309e-04	k: 1722	n:2880000
Cons ci ratio: 1.044162e-03	ci left: 8.298955e-01	ci right 8.307628e-01	k: 2391349	n:2880000
KS ci ratio: 1.962318e-01	ci left: 1.249503e-04	ci right 1.524602e-04	k: 398	n:2880000
NCOA6   2880000 perm   4130 sec   (697 perm/sec)   p_kst 1.381944e-04   p_cons 8.303295e-01   p_joint 5.979167e-04

Joint ci ratio: 9.408185e-02	ci left: 5.720964e-04	ci right 6.289120e-04	k: 1734	n:2890000
Cons ci ratio: 1.042388e-03	ci left: 8.298872e-01	ci right 8.307530e-01	k: 2399626	n:2890000
KS ci ratio: 1.952555e-01	ci left: 1.258342e-04	ci right 1.533845e-04	k: 402	n:2890000
NCOA6   2890000 perm   4156 sec   (695 perm/sec)   p_kst 1.391003e-04   p_cons 8.303204e-01   p_joint 6.000000e-04

Joint ci ratio: 9.394659e-02	ci left: 5.718072e-04	ci right 6.285080e-04	k: 1739	n:2900000
Cons ci ratio: 1.040571e-03	ci left: 8.298927e-01	ci right 8.307570e-01	k: 2407943	n:2900000
KS ci ratio: 1.952555e-01	ci left: 1.254003e-04	ci right 1.528556e-04	k: 402	n:2900000
NCOA6   2900000 perm   4181 sec   (694 perm/sec)   p_kst 1.386207e-04   p_cons 8.303252e-01   p_joint 5.996552e-04

Joint ci ratio: 9.375817e-02	ci left: 5.721913e-04	ci right 6.288101e-04	k: 1746	n:2910000
Cons ci ratio: 1.038749e-03	ci left: 8.299023e-01	ci right 8.307651e-01	k: 2416272	n:2910000
KS ci ratio: 1.947728e-01	ci left: 1.256231e-04	ci right 1.530511e-04	k: 404	n:2910000
NCOA6   2910000 perm   4207 sec   (692 perm/sec)   p_kst 1.388316e-04   p_cons 8.303340e-01   p_joint 6.000000e-04

Joint ci ratio: 9.357088e-02	ci left: 5.725729e-04	ci right 6.291101e-04	k: 1753	n:2920000
Cons ci ratio: 1.036978e-03	ci left: 8.299005e-01	ci right 8.307619e-01	k: 2424568	n:2920000
KS ci ratio: 1.947728e-01	ci left: 1.251928e-04	ci right 1.525270e-04	k: 404	n:2920000
NCOA6   2920000 perm   4233 sec   (690 perm/sec)   p_kst 1.383562e-04   p_cons 8.303315e-01   p_joint 6.003425e-04

Joint ci ratio: 9.341125e-02	ci left: 5.726186e-04	ci right 6.290586e-04	k: 1759	n:2930000
Cons ci ratio: 1.035191e-03	ci left: 8.299056e-01	ci right 8.307655e-01	k: 2432884	n:2930000
KS ci ratio: 1.940554e-01	ci left: 1.257396e-04	ci right 1.530801e-04	k: 407	n:2930000
NCOA6   2930000 perm   4259 sec   (688 perm/sec)   p_kst 1.389078e-04   p_cons 8.303358e-01   p_joint 6.003413e-04

Joint ci ratio: 9.330531e-02	ci left: 5.719997e-04	ci right 6.283112e-04	k: 1763	n:2940000
Cons ci ratio: 1.033367e-03	ci left: 8.299232e-01	ci right 8.307816e-01	k: 2441237	n:2940000
KS ci ratio: 1.940554e-01	ci left: 1.253119e-04	ci right 1.525594e-04	k: 407	n:2940000
NCOA6   2940000 perm   4285 sec   (686 perm/sec)   p_kst 1.384354e-04   p_cons 8.303527e-01   p_joint 5.996599e-04

Joint ci ratio: 9.325253e-02	ci left: 5.707228e-04	ci right 6.268752e-04	k: 1765	n:2950000
Cons ci ratio: 1.031542e-03	ci left: 8.299438e-01	ci right 8.308007e-01	k: 2449599	n:2950000
KS ci ratio: 1.940555e-01	ci left: 1.248871e-04	ci right 1.520423e-04	k: 407	n:2950000
NCOA6   2950000 perm   4311 sec   (684 perm/sec)   p_kst 1.379661e-04   p_cons 8.303725e-01   p_joint 5.983051e-04

Joint ci ratio: 9.309452e-02	ci left: 5.707745e-04	ci right 6.268316e-04	k: 1771	n:2960000
Cons ci ratio: 1.029768e-03	ci left: 8.299527e-01	ci right 8.308081e-01	k: 2457927	n:2960000
KS ci ratio: 1.940555e-01	ci left: 1.244652e-04	ci right 1.515286e-04	k: 407	n:2960000
NCOA6   2960000 perm   4337 sec   (682 perm/sec)   p_kst 1.375000e-04   p_cons 8.303807e-01   p_joint 5.983108e-04

Joint ci ratio: 9.288505e-02	ci left: 5.714837e-04	ci right 6.274773e-04	k: 1779	n:2970000
Cons ci ratio: 1.028109e-03	ci left: 8.299326e-01	ci right 8.307866e-01	k: 2466169	n:2970000
KS ci ratio: 1.935816e-01	ci left: 1.246869e-04	ci right 1.517244e-04	k: 409	n:2970000
NCOA6   2970000 perm   4363 sec   (681 perm/sec)   p_kst 1.377104e-04   p_cons 8.303599e-01   p_joint 5.989899e-04

Joint ci ratio: 9.272890e-02	ci left: 5.715326e-04	ci right 6.274318e-04	k: 1785	n:2980000
Cons ci ratio: 1.026398e-03	ci left: 8.299291e-01	ci right 8.307817e-01	k: 2474460	n:2980000
KS ci ratio: 1.931112e-01	ci left: 1.249071e-04	ci right 1.519189e-04	k: 411	n:2980000
NCOA6   2980000 perm   4389 sec   (679 perm/sec)   p_kst 1.379195e-04   p_cons 8.303557e-01   p_joint 5.989933e-04

Joint ci ratio: 9.259938e-02	ci left: 5.712546e-04	ci right 6.270443e-04	k: 1790	n:2990000
Cons ci ratio: 1.024735e-03	ci left: 8.299145e-01	ci right 8.307657e-01	k: 2482718	n:2990000
KS ci ratio: 1.928772e-01	ci left: 1.248077e-04	ci right 1.517614e-04	k: 412	n:2990000
NCOA6   2990000 perm   4415 sec   (677 perm/sec)   p_kst 1.377926e-04   p_cons 8.303405e-01   p_joint 5.986622e-04

Joint ci ratio: 9.278108e-02	ci left: 5.670712e-04	ci right 6.225668e-04	k: 1783	n:3000000
Cons ci ratio: 1.023080e-03	ci left: 8.299004e-01	ci right 8.307503e-01	k: 2490977	n:3000000
KS ci ratio: 1.919499e-01	ci left: 1.256607e-04	ci right 1.526530e-04	k: 416	n:3000000
NCOA6   3000000 perm   4442 sec   (675 perm/sec)   p_kst 1.386667e-04   p_cons 8.303257e-01   p_joint 5.943333e-04

Joint ci ratio: 9.265134e-02	ci left: 5.668098e-04	ci right 6.221981e-04	k: 1788	n:3010000
Cons ci ratio: 1.021416e-03	ci left: 8.298908e-01	ci right 8.307392e-01	k: 2499249	n:3010000
KS ci ratio: 1.912630e-01	ci left: 1.261921e-04	ci right 1.531903e-04	k: 419	n:3010000
NCOA6   3010000 perm   4468 sec   (674 perm/sec)   p_kst 1.392027e-04   p_cons 8.303153e-01   p_joint 5.940199e-04

Joint ci ratio: 9.254797e-02	ci left: 5.662268e-04	ci right 6.214931e-04	k: 1792	n:3020000
Cons ci ratio: 1.019718e-03	ci left: 8.298931e-01	ci right 8.307401e-01	k: 2507557	n:3020000
KS ci ratio: 1.905835e-01	ci left: 1.267202e-04	ci right 1.537238e-04	k: 422	n:3020000
NCOA6   3020000 perm   4539 sec   (665 perm/sec)   p_kst 1.397351e-04   p_cons 8.303169e-01   p_joint 5.933775e-04

Joint ci ratio: 9.278135e-02	ci left: 5.614565e-04	ci right 6.164029e-04	k: 1783	n:3030000
Cons ci ratio: 1.017986e-03	ci left: 8.299069e-01	ci right 8.307525e-01	k: 2515900	n:3030000
KS ci ratio: 1.899112e-01	ci left: 1.272449e-04	ci right 1.542537e-04	k: 425	n:3030000
NCOA6   3030000 perm   4566 sec   (664 perm/sec)   p_kst 1.402640e-04   p_cons 8.303300e-01   p_joint 5.884488e-04

Joint ci ratio: 9.259984e-02	ci left: 5.618589e-04	ci right 6.167312e-04	k: 1790	n:3040000
Cons ci ratio: 1.016356e-03	ci left: 8.298950e-01	ci right 8.307392e-01	k: 2524165	n:3040000
KS ci ratio: 1.896887e-01	ci left: 1.271397e-04	ci right 1.540908e-04	k: 426	n:3040000
NCOA6   3040000 perm   4593 sec   (662 perm/sec)   p_kst 1.401316e-04   p_cons 8.303174e-01   p_joint 5.888158e-04

Joint ci ratio: 9.241939e-02	ci left: 5.622587e-04	ci right 6.170573e-04	k: 1797	n:3050000
Cons ci ratio: 1.014657e-03	ci left: 8.299045e-01	ci right 8.307473e-01	k: 2532495	n:3050000
KS ci ratio: 1.894670e-01	ci left: 1.270351e-04	ci right 1.539290e-04	k: 427	n:3050000
NCOA6   3050000 perm   4619 sec   (660 perm/sec)   p_kst 1.400000e-04   p_cons 8.303262e-01   p_joint 5.891803e-04

Joint ci ratio: 9.221444e-02	ci left: 5.629753e-04	ci right 6.177155e-04	k: 1805	n:3060000
Cons ci ratio: 1.012896e-03	ci left: 8.299336e-01	ci right 8.307749e-01	k: 2540885	n:3060000
KS ci ratio: 1.885877e-01	ci left: 1.278653e-04	ci right 1.547949e-04	k: 431	n:3060000
NCOA6   3060000 perm   4646 sec   (659 perm/sec)   p_kst 1.408497e-04   p_cons 8.303546e-01   p_joint 5.898693e-04

Joint ci ratio: 9.206164e-02	ci left: 5.630509e-04	ci right 6.177028e-04	k: 1811	n:3070000
Cons ci ratio: 1.011200e-03	ci left: 8.299468e-01	ci right 8.307868e-01	k: 2549227	n:3070000
KS ci ratio: 1.881527e-01	ci left: 1.280696e-04	ci right 1.549729e-04	k: 433	n:3070000
NCOA6   3070000 perm   4674 sec   (657 perm/sec)   p_kst 1.410423e-04   p_cons 8.303671e-01   p_joint 5.899023e-04

Joint ci ratio: 9.190959e-02	ci left: 5.631260e-04	ci right 6.176901e-04	k: 1817	n:3080000
Cons ci ratio: 1.009598e-03	ci left: 8.299359e-01	ci right 8.307745e-01	k: 2557495	n:3080000
KS ci ratio: 1.877206e-01	ci left: 1.282725e-04	ci right 1.551496e-04	k: 435	n:3080000
NCOA6   3080000 perm   4720 sec   (653 perm/sec)   p_kst 1.412338e-04   p_cons 8.303555e-01   p_joint 5.899351e-04

Joint ci ratio: 9.168289e-02	ci left: 5.641494e-04	ci right 6.186706e-04	k: 1826	n:3090000
Cons ci ratio: 1.008003e-03	ci left: 8.299254e-01	ci right 8.307627e-01	k: 2565764	n:3090000
KS ci ratio: 1.875057e-01	ci left: 1.281658e-04	ci right 1.549863e-04	k: 436	n:3090000
NCOA6   3090000 perm   4748 sec   (651 perm/sec)   p_kst 1.411003e-04   p_cons 8.303443e-01   p_joint 5.909385e-04

Joint ci ratio: 9.150774e-02	ci left: 5.645359e-04	ci right 6.189847e-04	k: 1833	n:3100000
Cons ci ratio: 1.006400e-03	ci left: 8.299195e-01	ci right 8.307554e-01	k: 2574047	n:3100000
KS ci ratio: 1.872916e-01	ci left: 1.280599e-04	ci right 1.548240e-04	k: 437	n:3100000
NCOA6   3100000 perm   4782 sec   (648 perm/sec)   p_kst 1.409677e-04   p_cons 8.303377e-01   p_joint 5.912903e-04

Joint ci ratio: 9.135842e-02	ci left: 5.646058e-04	ci right 6.189677e-04	k: 1839	n:3110000
Cons ci ratio: 1.004761e-03	ci left: 8.299255e-01	ci right 8.307601e-01	k: 2582367	n:3110000
KS ci ratio: 1.872916e-01	ci left: 1.276481e-04	ci right 1.543262e-04	k: 437	n:3110000
NCOA6   3110000 perm   4809 sec   (647 perm/sec)   p_kst 1.405145e-04   p_cons 8.303431e-01   p_joint 5.913183e-04

Joint ci ratio: 9.118512e-02	ci left: 5.649886e-04	ci right 6.192786e-04	k: 1846	n:3120000
Cons ci ratio: 1.003122e-03	ci left: 8.299340e-01	ci right 8.307673e-01	k: 2590695	n:3120000
KS ci ratio: 1.870782e-01	ci left: 1.275445e-04	ci right 1.541671e-04	k: 438	n:3120000
NCOA6   3120000 perm   4836 sec   (645 perm/sec)   p_kst 1.403846e-04   p_cons 8.303510e-01   p_joint 5.916667e-04

Joint ci ratio: 9.096372e-02	ci left: 5.659934e-04	ci right 6.202409e-04	k: 1855	n:3130000
Cons ci ratio: 1.001563e-03	ci left: 8.299221e-01	ci right 8.307540e-01	k: 2598959	n:3130000
KS ci ratio: 1.866535e-01	ci left: 1.277461e-04	ci right 1.543434e-04	k: 440	n:3130000
NCOA6   3130000 perm   4863 sec   (644 perm/sec)   p_kst 1.405751e-04   p_cons 8.303383e-01   p_joint 5.926518e-04

Joint ci ratio: 9.084145e-02	ci left: 5.657470e-04	ci right 6.198942e-04	k: 1860	n:3140000
Cons ci ratio: 1.000012e-03	ci left: 8.299102e-01	ci right 8.307408e-01	k: 2607223	n:3140000
KS ci ratio: 1.866535e-01	ci left: 1.273392e-04	ci right 1.538518e-04	k: 440	n:3140000
NCOA6   3140000 perm   4891 sec   (642 perm/sec)   p_kst 1.401274e-04   p_cons 8.303258e-01   p_joint 5.923567e-04

Joint ci ratio: 9.062254e-02	ci left: 5.667433e-04	ci right 6.208482e-04	k: 1869	n:3150000
Cons ci ratio: 9.984547e-04	ci left: 8.299019e-01	ci right 8.307312e-01	k: 2615498	n:3150000
KS ci ratio: 1.858127e-01	ci left: 1.281456e-04	ci right 1.546924e-04	k: 444	n:3150000
NCOA6   3150000 perm   4919 sec   (640 perm/sec)   p_kst 1.409524e-04   p_cons 8.303168e-01   p_joint 5.933333e-04

Joint ci ratio: 9.047751e-02	ci left: 5.668056e-04	ci right 6.208252e-04	k: 1875	n:3160000
Cons ci ratio: 9.968817e-04	ci left: 8.299002e-01	ci right 8.307283e-01	k: 2623794	n:3160000
KS ci ratio: 1.853965e-01	ci left: 1.283436e-04	ci right 1.548651e-04	k: 446	n:3160000
NCOA6   3160000 perm   4946 sec   (639 perm/sec)   p_kst 1.411392e-04   p_cons 8.303146e-01   p_joint 5.933544e-04

Joint ci ratio: 9.030916e-02	ci left: 5.671758e-04	ci right 6.211249e-04	k: 1882	n:3170000
Cons ci ratio: 9.953951e-04	ci left: 8.298762e-01	ci right 8.307030e-01	k: 2632019	n:3170000
KS ci ratio: 1.853965e-01	ci left: 1.279387e-04	ci right 1.543766e-04	k: 446	n:3170000
NCOA6   3170000 perm   4974 sec   (637 perm/sec)   p_kst 1.406940e-04   p_cons 8.302899e-01   p_joint 5.936909e-04

Joint ci ratio: 9.018951e-02	ci left: 5.669291e-04	ci right 6.207795e-04	k: 1887	n:3180000
Cons ci ratio: 9.938365e-04	ci left: 8.298747e-01	ci right 8.307002e-01	k: 2640315	n:3180000
KS ci ratio: 1.851895e-01	ci left: 1.278363e-04	ci right 1.542202e-04	k: 447	n:3180000
NCOA6   3180000 perm   5001 sec   (636 perm/sec)   p_kst 1.405660e-04   p_cons 8.302877e-01   p_joint 5.933962e-04

Joint ci ratio: 9.002277e-02	ci left: 5.672968e-04	ci right 6.210773e-04	k: 1894	n:3190000
Cons ci ratio: 9.921869e-04	ci left: 8.299011e-01	ci right 8.307252e-01	k: 2648700	n:3190000
KS ci ratio: 1.851896e-01	ci left: 1.274355e-04	ci right 1.537367e-04	k: 447	n:3190000
NCOA6   3190000 perm   5029 sec   (634 perm/sec)   p_kst 1.401254e-04   p_cons 8.303135e-01   p_joint 5.937304e-04

Joint ci ratio: 9.108716e-02	ci left: 5.520852e-04	ci right 6.050753e-04	k: 1850	n:3200000
Cons ci ratio: 9.906707e-04	ci left: 8.298917e-01	ci right 8.307146e-01	k: 2656971	n:3200000
KS ci ratio: 1.851896e-01	ci left: 1.270373e-04	ci right 1.532563e-04	k: 447	n:3200000
NCOA6   3200000 perm   5058 sec   (633 perm/sec)   p_kst 1.396875e-04   p_cons 8.303034e-01   p_joint 5.781250e-04

Joint ci ratio: 9.086647e-02	ci left: 5.531053e-04	ci right 6.060578e-04	k: 1859	n:3210000
Cons ci ratio: 9.890881e-04	ci left: 8.299033e-01	ci right 8.307248e-01	k: 2665309	n:3210000
KS ci ratio: 1.845726e-01	ci left: 1.275329e-04	ci right 1.537566e-04	k: 450	n:3210000
NCOA6   3210000 perm   5086 sec   (631 perm/sec)   p_kst 1.401869e-04   p_cons 8.303143e-01   p_joint 5.791277e-04

Joint ci ratio: 9.069595e-02	ci left: 5.535121e-04	ci right 6.063989e-04	k: 1866	n:3220000
Cons ci ratio: 9.875523e-04	ci left: 8.299035e-01	ci right 8.307238e-01	k: 2673611	n:3220000
KS ci ratio: 1.841647e-01	ci left: 1.277293e-04	ci right 1.539289e-04	k: 452	n:3220000
NCOA6   3220000 perm   5113 sec   (630 perm/sec)   p_kst 1.403727e-04   p_cons 8.303140e-01   p_joint 5.795031e-04

Joint ci ratio: 9.052639e-02	ci left: 5.539165e-04	ci right 6.067378e-04	k: 1873	n:3230000
Cons ci ratio: 9.860009e-04	ci left: 8.299103e-01	ci right 8.307293e-01	k: 2681934	n:3230000
KS ci ratio: 1.837595e-01	ci left: 1.279245e-04	ci right 1.541000e-04	k: 454	n:3230000
NCOA6   3230000 perm   5142 sec   (628 perm/sec)   p_kst 1.405573e-04   p_cons 8.303201e-01   p_joint 5.798762e-04

Joint ci ratio: 9.035777e-02	ci left: 5.543185e-04	ci right 6.070745e-04	k: 1880	n:3240000
Cons ci ratio: 9.844913e-04	ci left: 8.299072e-01	ci right 8.307249e-01	k: 2690225	n:3240000
KS ci ratio: 1.835579e-01	ci left: 1.278241e-04	ci right 1.539472e-04	k: 455	n:3240000
NCOA6   3240000 perm   5170 sec   (627 perm/sec)   p_kst 1.404321e-04   p_cons 8.303164e-01   p_joint 5.802469e-04

Joint ci ratio: 9.028584e-02	ci left: 5.535152e-04	ci right 6.061505e-04	k: 1883	n:3250000
Cons ci ratio: 9.829907e-04	ci left: 8.299035e-01	ci right 8.307199e-01	k: 2698514	n:3250000
KS ci ratio: 1.831566e-01	ci left: 1.280180e-04	ci right 1.541171e-04	k: 457	n:3250000
NCOA6   3250000 perm   5199 sec   (625 perm/sec)   p_kst 1.406154e-04   p_cons 8.303120e-01   p_joint 5.793846e-04

Joint ci ratio: 9.007091e-02	ci left: 5.545158e-04	ci right 6.071141e-04	k: 1892	n:3260000
Cons ci ratio: 9.814564e-04	ci left: 8.299114e-01	ci right 8.307266e-01	k: 2706841	n:3260000
KS ci ratio: 1.827580e-01	ci left: 1.282107e-04	ci right 1.542859e-04	k: 459	n:3260000
NCOA6   3260000 perm   5228 sec   (624 perm/sec)   p_kst 1.407975e-04   p_cons 8.303193e-01   p_joint 5.803681e-04

Joint ci ratio: 9.011864e-02	ci left: 5.522221e-04	ci right 6.046321e-04	k: 1890	n:3270000
Cons ci ratio: 9.799781e-04	ci left: 8.299053e-01	ci right 8.307192e-01	k: 2715122	n:3270000
KS ci ratio: 1.823620e-01	ci left: 1.284023e-04	ci right 1.544536e-04	k: 461	n:3270000
NCOA6   3270000 perm   5256 sec   (622 perm/sec)   p_kst 1.409786e-04   p_cons 8.303125e-01   p_joint 5.779817e-04

Joint ci ratio: 8.992859e-02	ci left: 5.529226e-04	ci right 6.052827e-04	k: 1898	n:3280000
Cons ci ratio: 9.784102e-04	ci left: 8.299269e-01	ci right 8.307396e-01	k: 2723494	n:3280000
KS ci ratio: 1.821650e-01	ci left: 1.283018e-04	ci right 1.543015e-04	k: 462	n:3280000
NCOA6   3280000 perm   5285 sec   (621 perm/sec)   p_kst 1.408537e-04   p_cons 8.303335e-01   p_joint 5.786585e-04

Joint ci ratio: 8.985767e-02	ci left: 5.521334e-04	ci right 6.043752e-04	k: 1901	n:3290000
Cons ci ratio: 9.769541e-04	ci left: 8.299183e-01	ci right 8.307298e-01	k: 2731767	n:3290000
KS ci ratio: 1.817728e-01	ci left: 1.284920e-04	ci right 1.544681e-04	k: 464	n:3290000
NCOA6   3290000 perm   5319 sec   (618 perm/sec)   p_kst 1.410334e-04   p_cons 8.303243e-01   p_joint 5.778116e-04

Joint ci ratio: 8.966926e-02	ci left: 5.528301e-04	ci right 6.050224e-04	k: 1909	n:3300000
Cons ci ratio: 9.754342e-04	ci left: 8.299301e-01	ci right 8.307403e-01	k: 2740107	n:3300000
KS ci ratio: 1.809959e-01	ci left: 1.292597e-04	ci right 1.552671e-04	k: 468	n:3300000
NCOA6   3300000 perm   5348 sec   (617 perm/sec)   p_kst 1.418182e-04   p_cons 8.303355e-01   p_joint 5.784848e-04

Joint ci ratio: 9.023840e-02	ci left: 5.440721e-04	ci right 5.957809e-04	k: 1885	n:3310000
Cons ci ratio: 9.738660e-04	ci left: 8.299578e-01	ci right 8.307667e-01	k: 2748500	n:3310000
KS ci ratio: 1.806112e-01	ci left: 1.294461e-04	ci right 1.554296e-04	k: 470	n:3310000
NCOA6   3310000 perm   5377 sec   (616 perm/sec)   p_kst 1.419940e-04   p_cons 8.303625e-01   p_joint 5.694864e-04

Joint ci ratio: 9.007139e-02	ci left: 5.444943e-04	ci right 5.961423e-04	k: 1892	n:3320000
Cons ci ratio: 9.723968e-04	ci left: 8.299588e-01	ci right 8.307665e-01	k: 2756805	n:3320000
KS ci ratio: 1.804198e-01	ci left: 1.293438e-04	ci right 1.552762e-04	k: 471	n:3320000
NCOA6   3320000 perm   5407 sec   (614 perm/sec)   p_kst 1.418675e-04   p_cons 8.303630e-01   p_joint 5.698795e-04

Joint ci ratio: 8.992898e-02	ci left: 5.446204e-04	ci right 5.961944e-04	k: 1898	n:3330000
Cons ci ratio: 9.709052e-04	ci left: 8.299682e-01	ci right 8.307747e-01	k: 2765138	n:3330000
KS ci ratio: 1.802290e-01	ci left: 1.292421e-04	ci right 1.551237e-04	k: 472	n:3330000
NCOA6   3330000 perm   5435 sec   (613 perm/sec)   p_kst 1.417417e-04   p_cons 8.303718e-01   p_joint 5.699700e-04

Joint ci ratio: 9.043074e-02	ci left: 5.368441e-04	ci right 5.879804e-04	k: 1877	n:3340000
Cons ci ratio: 9.694844e-04	ci left: 8.299590e-01	ci right 8.307643e-01	k: 2773409	n:3340000
KS ci ratio: 1.798491e-01	ci left: 1.294270e-04	ci right 1.552851e-04	k: 474	n:3340000
NCOA6   3340000 perm   5464 sec   (611 perm/sec)   p_kst 1.419162e-04   p_cons 8.303620e-01   p_joint 5.619760e-04

Joint ci ratio: 9.035863e-02	ci left: 5.361168e-04	ci right 5.871410e-04	k: 1880	n:3350000
Cons ci ratio: 9.680544e-04	ci left: 8.299544e-01	ci right 8.307585e-01	k: 2781695	n:3350000
KS ci ratio: 1.796601e-01	ci left: 1.293257e-04	ci right 1.551334e-04	k: 475	n:3350000
NCOA6   3350000 perm   5493 sec   (610 perm/sec)   p_kst 1.417910e-04   p_cons 8.303567e-01   p_joint 5.611940e-04

Joint ci ratio: 9.023878e-02	ci left: 5.359757e-04	ci right 5.869152e-04	k: 1885	n:3360000
Cons ci ratio: 9.665041e-04	ci left: 8.299867e-01	ci right 8.307895e-01	k: 2790105	n:3360000
KS ci ratio: 1.796602e-01	ci left: 1.289408e-04	ci right 1.546717e-04	k: 475	n:3360000
NCOA6   3360000 perm   5530 sec   (608 perm/sec)   p_kst 1.413690e-04   p_cons 8.303884e-01   p_joint 5.610119e-04

Joint ci ratio: 9.214041e-02	ci left: 5.120573e-04	ci right 5.618044e-04	k: 1808	n:3370000
Cons ci ratio: 9.651208e-04	ci left: 8.299722e-01	ci right 8.307739e-01	k: 2798358	n:3370000
KS ci ratio: 1.787238e-01	ci left: 1.299753e-04	ci right 1.557629e-04	k: 480	n:3370000
NCOA6   3370000 perm   5559 sec   (606 perm/sec)   p_kst 1.424332e-04   p_cons 8.303733e-01   p_joint 5.364985e-04

Joint ci ratio: 9.196263e-02	ci left: 5.125657e-04	ci right 5.622610e-04	k: 1815	n:3380000
Cons ci ratio: 9.636492e-04	ci left: 8.299853e-01	ci right 8.307858e-01	k: 2806704	n:3380000
KS ci ratio: 1.783534e-01	ci left: 1.301561e-04	ci right 1.559202e-04	k: 482	n:3380000
NCOA6   3380000 perm   5589 sec   (605 perm/sec)   p_kst 1.426036e-04   p_cons 8.303858e-01   p_joint 5.369822e-04

Joint ci ratio: 9.173554e-02	ci left: 5.136476e-04	ci right 5.633182e-04	k: 1824	n:3390000
Cons ci ratio: 9.621955e-04	ci left: 8.299951e-01	ci right 8.307943e-01	k: 2815039	n:3390000
KS ci ratio: 1.776194e-01	ci left: 1.308995e-04	ci right 1.566927e-04	k: 486	n:3390000
NCOA6   3390000 perm   5618 sec   (603 perm/sec)   p_kst 1.433628e-04   p_cons 8.303950e-01   p_joint 5.380531e-04

Joint ci ratio: 9.161014e-02	ci left: 5.135738e-04	ci right 5.631657e-04	k: 1829	n:3400000
Cons ci ratio: 9.607704e-04	ci left: 8.299983e-01	ci right 8.307964e-01	k: 2823352	n:3400000
KS ci ratio: 1.774373e-01	ci left: 1.307955e-04	ci right 1.565390e-04	k: 487	n:3400000
NCOA6   3400000 perm   5648 sec   (602 perm/sec)   p_kst 1.432353e-04   p_cons 8.303976e-01   p_joint 5.379412e-04

Joint ci ratio: 9.136080e-02	ci left: 5.149331e-04	ci right 5.645138e-04	k: 1839	n:3410000
Cons ci ratio: 9.593486e-04	ci left: 8.300024e-01	ci right 8.307994e-01	k: 2831668	n:3410000
KS ci ratio: 1.774373e-01	ci left: 1.304120e-04	ci right 1.560800e-04	k: 487	n:3410000
NCOA6   3410000 perm   5677 sec   (601 perm/sec)   p_kst 1.428152e-04   p_cons 8.304012e-01   p_joint 5.392962e-04

Joint ci ratio: 9.153525e-02	ci left: 5.114275e-04	ci right 5.607696e-04	k: 1832	n:3420000
Cons ci ratio: 9.579281e-04	ci left: 8.300080e-01	ci right 8.308037e-01	k: 2839989	n:3420000
KS ci ratio: 1.767145e-01	ci left: 1.311484e-04	ci right 1.568450e-04	k: 491	n:3420000
NCOA6   3420000 perm   5706 sec   (599 perm/sec)   p_kst 1.435673e-04   p_cons 8.304061e-01   p_joint 5.356725e-04

Joint ci ratio: 9.146046e-02	ci left: 5.107910e-04	ci right 5.600294e-04	k: 1835	n:3430000
Cons ci ratio: 9.565268e-04	ci left: 8.300097e-01	ci right 8.308043e-01	k: 2848297	n:3430000
KS ci ratio: 1.767145e-01	ci left: 1.307661e-04	ci right 1.563877e-04	k: 491	n:3430000
NCOA6   3430000 perm   5736 sec   (598 perm/sec)   p_kst 1.431487e-04   p_cons 8.304073e-01   p_joint 5.349854e-04

Joint ci ratio: 9.131138e-02	ci left: 5.110105e-04	ci right 5.601854e-04	k: 1841	n:3440000
Cons ci ratio: 9.551454e-04	ci left: 8.300074e-01	ci right 8.308008e-01	k: 2856591	n:3440000
KS ci ratio: 1.765352e-01	ci left: 1.306638e-04	ci right 1.562366e-04	k: 492	n:3440000
NCOA6   3440000 perm   5765 sec   (597 perm/sec)   p_kst 1.430233e-04   p_cons 8.304044e-01   p_joint 5.351744e-04

Joint ci ratio: 9.247403e-02	ci left: 4.965022e-04	ci right 5.449222e-04	k: 1795	n:3450000
Cons ci ratio: 9.537454e-04	ci left: 8.300123e-01	ci right 8.308046e-01	k: 2864910	n:3450000
KS ci ratio: 1.763565e-01	ci left: 1.305621e-04	ci right 1.560864e-04	k: 493	n:3450000
NCOA6   3450000 perm   5794 sec   (595 perm/sec)   p_kst 1.428986e-04   p_cons 8.304087e-01   p_joint 5.202899e-04

Joint ci ratio: 9.234557e-02	ci left: 4.964789e-04	ci right 5.448258e-04	k: 1800	n:3460000
Cons ci ratio: 9.523663e-04	ci left: 8.300128e-01	ci right 8.308040e-01	k: 2873214	n:3460000
KS ci ratio: 1.758234e-01	ci left: 1.310136e-04	ci right 1.565405e-04	k: 496	n:3460000
NCOA6   3460000 perm   5824 sec   (594 perm/sec)   p_kst 1.433526e-04   p_cons 8.304087e-01   p_joint 5.202312e-04

Joint ci ratio: 9.224321e-02	ci left: 4.961743e-04	ci right 5.444350e-04	k: 1804	n:3470000
Cons ci ratio: 9.510028e-04	ci left: 8.300105e-01	ci right 8.308005e-01	k: 2881508	n:3470000
KS ci ratio: 1.756468e-01	ci left: 1.309115e-04	ci right 1.563902e-04	k: 497	n:3470000
NCOA6   3470000 perm   5854 sec   (593 perm/sec)   p_kst 1.432277e-04   p_cons 8.304058e-01   p_joint 5.198847e-04

Joint ci ratio: 9.216668e-02	ci left: 4.955907e-04	ci right 5.437525e-04	k: 1807	n:3480000
Cons ci ratio: 9.496055e-04	ci left: 8.300200e-01	ci right 8.308088e-01	k: 2889843	n:3480000
KS ci ratio: 1.752951e-01	ci left: 1.310848e-04	ci right 1.565408e-04	k: 499	n:3480000
NCOA6   3480000 perm   5884 sec   (591 perm/sec)   p_kst 1.433908e-04   p_cons 8.304147e-01   p_joint 5.192529e-04

Joint ci ratio: 9.203950e-02	ci left: 4.955703e-04	ci right 5.436601e-04	k: 1812	n:3490000
Cons ci ratio: 9.482046e-04	ci left: 8.300322e-01	ci right 8.308199e-01	k: 2898188	n:3490000
KS ci ratio: 1.747715e-01	ci left: 1.315312e-04	ci right 1.569894e-04	k: 502	n:3490000
NCOA6   3490000 perm   5915 sec   (590 perm/sec)   p_kst 1.438395e-04   p_cons 8.304264e-01   p_joint 5.191977e-04

Joint ci ratio: 9.196348e-02	ci left: 4.949918e-04	ci right 5.429837e-04	k: 1815	n:3500000
Cons ci ratio: 9.468839e-04	ci left: 8.300224e-01	ci right 8.308090e-01	k: 2906456	n:3500000
KS ci ratio: 1.747716e-01	ci left: 1.311554e-04	ci right 1.565409e-04	k: 502	n:3500000
NCOA6   3500000 perm   5945 sec   (589 perm/sec)   p_kst 1.434286e-04   p_cons 8.304160e-01   p_joint 5.185714e-04

Joint ci ratio: 9.188764e-02	ci left: 4.944166e-04	ci right 5.423111e-04	k: 1818	n:3510000
Cons ci ratio: 9.455438e-04	ci left: 8.300201e-01	ci right 8.308056e-01	k: 2914750	n:3510000
KS ci ratio: 1.745981e-01	ci left: 1.310541e-04	ci right 1.563923e-04	k: 503	n:3510000
NCOA6   3510000 perm   5975 sec   (587 perm/sec)   p_kst 1.433048e-04   p_cons 8.304131e-01   p_joint 5.179487e-04

Joint ci ratio: 9.234598e-02	ci left: 4.880161e-04	ci right 5.355391e-04	k: 1800	n:3520000
Cons ci ratio: 9.441942e-04	ci left: 8.300223e-01	ci right 8.308067e-01	k: 2923060	n:3520000
KS ci ratio: 1.739093e-01	ci left: 1.317686e-04	ci right 1.571338e-04	k: 507	n:3520000
NCOA6   3520000 perm   6005 sec   (586 perm/sec)   p_kst 1.440341e-04   p_cons 8.304148e-01   p_joint 5.113636e-04

Joint ci ratio: 9.226920e-02	ci left: 4.874639e-04	ci right 5.348915e-04	k: 1803	n:3530000
Cons ci ratio: 9.429157e-04	ci left: 8.300050e-01	ci right 8.307882e-01	k: 2931301	n:3530000
KS ci ratio: 1.737384e-01	ci left: 1.316663e-04	ci right 1.569843e-04	k: 508	n:3530000
NCOA6   3530000 perm   6036 sec   (585 perm/sec)   p_kst 1.439093e-04   p_cons 8.303969e-01   p_joint 5.107649e-04

Joint ci ratio: 9.214160e-02	ci left: 4.874667e-04	ci right 5.348255e-04	k: 1808	n:3540000
Cons ci ratio: 9.416037e-04	ci left: 8.299993e-01	ci right 8.307815e-01	k: 2939583	n:3540000
KS ci ratio: 1.735680e-01	ci left: 1.315646e-04	ci right 1.568356e-04	k: 509	n:3540000
NCOA6   3540000 perm   6066 sec   (584 perm/sec)   p_kst 1.437853e-04   p_cons 8.303907e-01   p_joint 5.107345e-04

Joint ci ratio: 9.203991e-02	ci left: 4.871944e-04	ci right 5.344716e-04	k: 1812	n:3550000
Cons ci ratio: 9.402662e-04	ci left: 8.300030e-01	ci right 8.307841e-01	k: 2947898	n:3550000
KS ci ratio: 1.735680e-01	ci left: 1.311940e-04	ci right 1.563938e-04	k: 509	n:3550000
NCOA6   3550000 perm   6096 sec   (582 perm/sec)   p_kst 1.433803e-04   p_cons 8.303938e-01   p_joint 5.104225e-04

Joint ci ratio: 9.384397e-02	ci left: 4.668941e-04	ci right 5.131382e-04	k: 1743	n:3560000
Cons ci ratio: 9.389193e-04	ci left: 8.300112e-01	ci right 8.307911e-01	k: 2956229	n:3560000
KS ci ratio: 1.735681e-01	ci left: 1.308254e-04	ci right 1.559545e-04	k: 509	n:3560000
NCOA6   3560000 perm   6126 sec   (581 perm/sec)   p_kst 1.429775e-04   p_cons 8.304014e-01   p_joint 4.896067e-04

Joint ci ratio: 9.357600e-02	ci left: 4.683217e-04	ci right 5.145676e-04	k: 1753	n:3570000
Cons ci ratio: 9.375884e-04	ci left: 8.300162e-01	ci right 8.307950e-01	k: 2964549	n:3570000
KS ci ratio: 1.728913e-01	ci left: 1.315309e-04	ci right 1.566866e-04	k: 513	n:3570000
NCOA6   3570000 perm   6157 sec   (580 perm/sec)   p_kst 1.436975e-04   p_cons 8.304059e-01   p_joint 4.910364e-04

Joint ci ratio: 9.346950e-02	ci left: 4.681047e-04	ci right 5.142737e-04	k: 1757	n:3580000
Cons ci ratio: 9.363022e-04	ci left: 8.300095e-01	ci right 8.307872e-01	k: 2972827	n:3580000
KS ci ratio: 1.725559e-01	ci left: 1.316980e-04	ci right 1.568317e-04	k: 515	n:3580000
NCOA6   3580000 perm   6188 sec   (579 perm/sec)   p_kst 1.438547e-04   p_cons 8.303986e-01   p_joint 4.907821e-04

Joint ci ratio: 9.338987e-02	ci left: 4.676170e-04	ci right 5.136963e-04	k: 1760	n:3590000
Cons ci ratio: 9.349510e-04	ci left: 8.300239e-01	ci right 8.308006e-01	k: 2981181	n:3590000
KS ci ratio: 1.723890e-01	ci left: 1.315977e-04	ci right 1.566854e-04	k: 516	n:3590000
NCOA6   3590000 perm   6259 sec   (574 perm/sec)   p_kst 1.437326e-04   p_cons 8.304125e-01   p_joint 4.902507e-04

Joint ci ratio: 9.387115e-02	ci left: 4.614350e-04	ci right 5.071524e-04	k: 1742	n:3600000
Cons ci ratio: 9.336434e-04	ci left: 8.300269e-01	ci right 8.308025e-01	k: 2989494	n:3600000
KS ci ratio: 1.723890e-01	ci left: 1.312321e-04	ci right 1.562502e-04	k: 516	n:3600000
NCOA6   3600000 perm   6290 sec   (572 perm/sec)   p_kst 1.433333e-04   p_cons 8.304150e-01   p_joint 4.838889e-04

Joint ci ratio: 9.376364e-02	ci left: 4.612389e-04	ci right 5.068816e-04	k: 1746	n:3610000
Cons ci ratio: 9.323376e-04	ci left: 8.300310e-01	ci right 8.308055e-01	k: 2997811	n:3610000
KS ci ratio: 1.720565e-01	ci left: 1.313987e-04	ci right 1.563953e-04	k: 518	n:3610000
NCOA6   3610000 perm   6320 sec   (571 perm/sec)   p_kst 1.434903e-04   p_cons 8.304186e-01   p_joint 4.836565e-04

Joint ci ratio: 9.365649e-02	ci left: 4.610438e-04	ci right 5.066122e-04	k: 1750	n:3620000
Cons ci ratio: 9.310345e-04	ci left: 8.300360e-01	ci right 8.308094e-01	k: 3006131	n:3620000
KS ci ratio: 1.717259e-01	ci left: 1.315645e-04	ci right 1.565395e-04	k: 520	n:3620000
NCOA6   3620000 perm   6351 sec   (570 perm/sec)   p_kst 1.436464e-04   p_cons 8.304229e-01   p_joint 4.834254e-04

Joint ci ratio: 9.357638e-02	ci left: 4.605808e-04	ci right 5.060624e-04	k: 1753	n:3630000
Cons ci ratio: 9.297187e-04	ci left: 8.300464e-01	ci right 8.308187e-01	k: 3014471	n:3630000
KS ci ratio: 1.717260e-01	ci left: 1.312020e-04	ci right 1.561082e-04	k: 520	n:3630000
NCOA6   3630000 perm   6383 sec   (569 perm/sec)   p_kst 1.432507e-04   p_cons 8.304328e-01   p_joint 4.829201e-04

Joint ci ratio: 9.339019e-02	ci left: 4.611936e-04	ci right 5.066401e-04	k: 1760	n:3640000
Cons ci ratio: 9.284465e-04	ci left: 8.300451e-01	ci right 8.308164e-01	k: 3022769	n:3640000
KS ci ratio: 1.713973e-01	ci left: 1.313674e-04	ci right 1.562524e-04	k: 522	n:3640000
NCOA6   3640000 perm   6413 sec   (568 perm/sec)   p_kst 1.434066e-04   p_cons 8.304310e-01   p_joint 4.835165e-04

Joint ci ratio: 9.336373e-02	ci left: 4.601976e-04	ci right 5.055325e-04	k: 1761	n:3650000
Cons ci ratio: 9.271515e-04	ci left: 8.300524e-01	ci right 8.308226e-01	k: 3031098	n:3650000
KS ci ratio: 1.713973e-01	ci left: 1.310075e-04	ci right 1.558243e-04	k: 522	n:3650000
NCOA6   3650000 perm   6444 sec   (566 perm/sec)   p_kst 1.430137e-04   p_cons 8.304378e-01   p_joint 4.824658e-04

Joint ci ratio: 9.323154e-02	ci left: 4.602745e-04	ci right 5.055492e-04	k: 1766	n:3660000
Cons ci ratio: 9.259041e-04	ci left: 8.300469e-01	ci right 8.308160e-01	k: 3039380	n:3660000
KS ci ratio: 1.710705e-01	ci left: 1.311726e-04	ci right 1.559684e-04	k: 524	n:3660000
NCOA6   3660000 perm   6475 sec   (565 perm/sec)   p_kst 1.431694e-04   p_cons 8.304317e-01   p_joint 4.825137e-04

Joint ci ratio: 9.309991e-02	ci left: 4.603510e-04	ci right 5.055658e-04	k: 1771	n:3670000
Cons ci ratio: 9.245991e-04	ci left: 8.300604e-01	ci right 8.308285e-01	k: 3047732	n:3670000
KS ci ratio: 1.709079e-01	ci left: 1.310760e-04	ci right 1.558275e-04	k: 525	n:3670000
NCOA6   3670000 perm   6506 sec   (564 perm/sec)   p_kst 1.430518e-04   p_cons 8.304447e-01   p_joint 4.825613e-04

Joint ci ratio: 9.294268e-02	ci left: 4.606925e-04	ci right 5.058604e-04	k: 1777	n:3680000
Cons ci ratio: 9.233112e-04	ci left: 8.300703e-01	ci right 8.308373e-01	k: 3056071	n:3680000
KS ci ratio: 1.707456e-01	ci left: 1.309799e-04	ci right 1.556874e-04	k: 526	n:3680000
NCOA6   3680000 perm   6537 sec   (563 perm/sec)   p_kst 1.429348e-04   p_cons 8.304541e-01   p_joint 4.828804e-04

Joint ci ratio: 9.283832e-02	ci left: 4.605029e-04	ci right 5.055987e-04	k: 1781	n:3690000
Cons ci ratio: 9.220527e-04	ci left: 8.300728e-01	ci right 8.308388e-01	k: 3064383	n:3690000
KS ci ratio: 1.707457e-01	ci left: 1.306250e-04	ci right 1.552655e-04	k: 526	n:3690000
NCOA6   3690000 perm   6568 sec   (562 perm/sec)   p_kst 1.425474e-04   p_cons 8.304561e-01   p_joint 4.826558e-04

Joint ci ratio: 9.281233e-02	ci left: 4.595223e-04	ci right 5.045087e-04	k: 1782	n:3700000
Cons ci ratio: 9.208284e-04	ci left: 8.300665e-01	ci right 8.308314e-01	k: 3072662	n:3700000
KS ci ratio: 1.707457e-01	ci left: 1.302719e-04	ci right 1.548459e-04	k: 526	n:3700000
NCOA6   3700000 perm   6600 sec   (561 perm/sec)   p_kst 1.421622e-04   p_cons 8.304492e-01   p_joint 4.816216e-04

Joint ci ratio: 9.260477e-02	ci left: 4.603900e-04	ci right 5.053552e-04	k: 1790	n:3710000
Cons ci ratio: 9.195034e-04	ci left: 8.300925e-01	ci right 8.308563e-01	k: 3081061	n:3710000
KS ci ratio: 1.702617e-01	ci left: 1.306949e-04	ci right 1.552716e-04	k: 529	n:3710000
NCOA6   3710000 perm   6633 sec   (559 perm/sec)   p_kst 1.425876e-04   p_cons 8.304747e-01   p_joint 4.824798e-04

Joint ci ratio: 9.247577e-02	ci left: 4.604654e-04	ci right 5.053719e-04	k: 1795	n:3720000
Cons ci ratio: 9.182910e-04	ci left: 8.300855e-01	ci right 8.308484e-01	k: 3089338	n:3720000
KS ci ratio: 1.699414e-01	ci left: 1.308583e-04	ci right 1.554147e-04	k: 531	n:3720000
NCOA6   3720000 perm   6665 sec   (558 perm/sec)   p_kst 1.427419e-04   p_cons 8.304672e-01   p_joint 4.825269e-04

Joint ci ratio: 9.234732e-02	ci left: 4.605404e-04	ci right 5.053884e-04	k: 1800	n:3730000
Cons ci ratio: 9.170423e-04	ci left: 8.300912e-01	ci right 8.308530e-01	k: 3097662	n:3730000
KS ci ratio: 1.694642e-01	ci left: 1.312776e-04	ci right 1.558365e-04	k: 534	n:3730000
NCOA6   3730000 perm   6696 sec   (557 perm/sec)   p_kst 1.431635e-04   p_cons 8.304724e-01   p_joint 4.825737e-04

Joint ci ratio: 9.341733e-02	ci left: 4.486009e-04	ci right 4.928202e-04	k: 1759	n:3740000
Cons ci ratio: 9.157840e-04	ci left: 8.301014e-01	ci right 8.308622e-01	k: 3106003	n:3740000
KS ci ratio: 1.688342e-01	ci left: 1.319509e-04	ci right 1.565345e-04	k: 538	n:3740000
NCOA6   3740000 perm   6728 sec   (556 perm/sec)   p_kst 1.438503e-04   p_cons 8.304821e-01   p_joint 4.703209e-04

Joint ci ratio: 9.333784e-02	ci left: 4.481860e-04	ci right 4.923246e-04	k: 1762	n:3750000
Cons ci ratio: 9.145758e-04	ci left: 8.300977e-01	ci right 8.308575e-01	k: 3114292	n:3750000
KS ci ratio: 1.686778e-01	ci left: 1.318544e-04	ci right 1.563950e-04	k: 539	n:3750000
NCOA6   3750000 perm   6761 sec   (555 perm/sec)   p_kst 1.437333e-04   p_cons 8.304779e-01   p_joint 4.698667e-04

Joint ci ratio: 9.323214e-02	ci left: 4.480330e-04	ci right 4.921039e-04	k: 1766	n:3760000
Cons ci ratio: 9.133293e-04	ci left: 8.301073e-01	ci right 8.308661e-01	k: 3122631	n:3760000
KS ci ratio: 1.686778e-01	ci left: 1.315037e-04	ci right 1.559791e-04	k: 539	n:3760000
NCOA6   3760000 perm   6800 sec   (553 perm/sec)   p_kst 1.433511e-04   p_cons 8.304870e-01   p_joint 4.696809e-04

Joint ci ratio: 9.312680e-02	ci left: 4.478809e-04	ci right 4.918843e-04	k: 1770	n:3770000
Cons ci ratio: 9.120835e-04	ci left: 8.301182e-01	ci right 8.308760e-01	k: 3130975	n:3770000
KS ci ratio: 1.685218e-01	ci left: 1.314090e-04	ci right 1.558418e-04	k: 540	n:3770000
NCOA6   3770000 perm   6833 sec   (552 perm/sec)   p_kst 1.432361e-04   p_cons 8.304973e-01   p_joint 4.694960e-04

Joint ci ratio: 9.296943e-02	ci left: 4.482464e-04	ci right 4.922073e-04	k: 1776	n:3780000
Cons ci ratio: 9.109267e-04	ci left: 8.301031e-01	ci right 8.308599e-01	k: 3139221	n:3780000
KS ci ratio: 1.683663e-01	ci left: 1.313147e-04	ci right 1.557052e-04	k: 541	n:3780000
NCOA6   3780000 perm   6866 sec   (551 perm/sec)   p_kst 1.431217e-04   p_cons 8.304817e-01   p_joint 4.698413e-04

Joint ci ratio: 9.286498e-02	ci left: 4.480945e-04	ci right 4.919885e-04	k: 1780	n:3790000
Cons ci ratio: 9.097394e-04	ci left: 8.300989e-01	ci right 8.308547e-01	k: 3147508	n:3790000
KS ci ratio: 1.680565e-01	ci left: 1.314737e-04	ci right 1.558443e-04	k: 543	n:3790000
NCOA6   3790000 perm   6899 sec   (549 perm/sec)   p_kst 1.432718e-04   p_cons 8.304770e-01   p_joint 4.696570e-04

Joint ci ratio: 9.281292e-02	ci left: 4.474294e-04	ci right 4.912323e-04	k: 1782	n:3800000
Cons ci ratio: 9.085507e-04	ci left: 8.300966e-01	ci right 8.308513e-01	k: 3155802	n:3800000
KS ci ratio: 1.679023e-01	ci left: 1.313799e-04	ci right 1.557084e-04	k: 544	n:3800000
NCOA6   3800000 perm   6933 sec   (548 perm/sec)   p_kst 1.431579e-04   p_cons 8.304742e-01   p_joint 4.689474e-04

Joint ci ratio: 9.278695e-02	ci left: 4.465114e-04	ci right 4.902116e-04	k: 1783	n:3810000
Cons ci ratio: 9.073980e-04	ci left: 8.300845e-01	ci right 8.308383e-01	k: 3164059	n:3810000
KS ci ratio: 1.677485e-01	ci left: 1.312865e-04	ci right 1.555732e-04	k: 545	n:3810000
NCOA6   3810000 perm   6967 sec   (547 perm/sec)   p_kst 1.430446e-04   p_cons 8.304617e-01   p_joint 4.679790e-04

Joint ci ratio: 9.260542e-02	ci left: 4.471326e-04	ci right 4.908032e-04	k: 1790	n:3820000
Cons ci ratio: 9.062404e-04	ci left: 8.300754e-01	ci right 8.308283e-01	k: 3172327	n:3820000
KS ci ratio: 1.674421e-01	ci left: 1.314444e-04	ci right 1.557114e-04	k: 547	n:3820000
NCOA6   3820000 perm   7000 sec   (546 perm/sec)   p_kst 1.431937e-04   p_cons 8.304521e-01   p_joint 4.685864e-04

Joint ci ratio: 9.257962e-02	ci left: 4.462201e-04	ci right 4.897889e-04	k: 1791	n:3830000
Cons ci ratio: 9.050335e-04	ci left: 8.300831e-01	ci right 8.308349e-01	k: 3180659	n:3830000
KS ci ratio: 1.672895e-01	ci left: 1.313514e-04	ci right 1.555769e-04	k: 548	n:3830000
NCOA6   3830000 perm   7094 sec   (540 perm/sec)   p_kst 1.430809e-04   p_cons 8.304593e-01   p_joint 4.676240e-04

Joint ci ratio: 9.247647e-02	ci left: 4.460757e-04	ci right 4.895792e-04	k: 1795	n:3840000
Cons ci ratio: 9.037745e-04	ci left: 8.301085e-01	ci right 8.308593e-01	k: 3189059	n:3840000
KS ci ratio: 1.671374e-01	ci left: 1.312588e-04	ci right 1.554430e-04	k: 549	n:3840000
NCOA6   3840000 perm   7130 sec   (539 perm/sec)   p_kst 1.429688e-04   p_cons 8.304841e-01   p_joint 4.674479e-04

Joint ci ratio: 9.242506e-02	ci left: 4.454245e-04	ci right 4.888390e-04	k: 1797	n:3850000
Cons ci ratio: 9.025874e-04	ci left: 8.301129e-01	ci right 8.308627e-01	k: 3197379	n:3850000
KS ci ratio: 1.671374e-01	ci left: 1.309179e-04	ci right 1.550393e-04	k: 549	n:3850000
NCOA6   3850000 perm   7164 sec   (537 perm/sec)   p_kst 1.425974e-04   p_cons 8.304881e-01   p_joint 4.667532e-04

Joint ci ratio: 9.232243e-02	ci left: 4.452829e-04	ci right 4.886328e-04	k: 1801	n:3860000
Cons ci ratio: 9.014124e-04	ci left: 8.301150e-01	ci right 8.308638e-01	k: 3205690	n:3860000
KS ci ratio: 1.671374e-01	ci left: 1.305787e-04	ci right 1.546376e-04	k: 549	n:3860000
NCOA6   3860000 perm   7198 sec   (536 perm/sec)   p_kst 1.422280e-04   p_cons 8.304896e-01   p_joint 4.665803e-04

Joint ci ratio: 9.224569e-02	ci left: 4.448896e-04	ci right 4.881633e-04	k: 1804	n:3870000
Cons ci ratio: 9.002519e-04	ci left: 8.301139e-01	ci right 8.308618e-01	k: 3213989	n:3870000
KS ci ratio: 1.669857e-01	ci left: 1.304889e-04	ci right 1.545072e-04	k: 550	n:3870000
NCOA6   3870000 perm   7233 sec   (535 perm/sec)   p_kst 1.421189e-04   p_cons 8.304881e-01   p_joint 4.661499e-04

Joint ci ratio: 8.309868e-02	ci left: 5.493726e-04	ci right 5.972541e-04	k: 2223	n:3880000
Cons ci ratio: 8.990959e-04	ci left: 8.301129e-01	ci right 8.308598e-01	k: 3222288	n:3880000
KS ci ratio: 1.666835e-01	ci left: 1.306465e-04	ci right 1.546460e-04	k: 552	n:3880000
NCOA6   3880000 perm   7266 sec   (534 perm/sec)   p_kst 1.422680e-04   p_cons 8.304866e-01   p_joint 5.729381e-04

Joint ci ratio: 8.302407e-02	ci left: 5.489673e-04	ci right 5.967684e-04	k: 2227	n:3890000
Cons ci ratio: 8.979353e-04	ci left: 8.301147e-01	ci right 8.308607e-01	k: 3230598	n:3890000
KS ci ratio: 1.665330e-01	ci left: 1.305570e-04	ci right 1.545162e-04	k: 553	n:3890000
NCOA6   3890000 perm   7301 sec   (533 perm/sec)   p_kst 1.421594e-04   p_cons 8.304879e-01   p_joint 5.724936e-04

Joint ci ratio: 8.296826e-02	ci left: 5.483129e-04	ci right 5.960234e-04	k: 2230	n:3900000
Cons ci ratio: 8.967898e-04	ci left: 8.301131e-01	ci right 8.308582e-01	k: 3238895	n:3900000
KS ci ratio: 1.662332e-01	ci left: 1.307137e-04	ci right 1.546542e-04	k: 555	n:3900000
NCOA6   3900000 perm   7334 sec   (532 perm/sec)   p_kst 1.423077e-04   p_cons 8.304859e-01   p_joint 5.717949e-04

Joint ci ratio: 8.436075e-02	ci left: 5.286309e-04	ci right 5.754387e-04	k: 2157	n:3910000
Cons ci ratio: 8.956185e-04	ci left: 8.301211e-01	ci right 8.308651e-01	k: 3247229	n:3910000
KS ci ratio: 1.657865e-01	ci left: 1.311148e-04	ci right 1.550577e-04	k: 558	n:3910000
NCOA6   3910000 perm   7369 sec   (531 perm/sec)   p_kst 1.427110e-04   p_cons 8.304934e-01   p_joint 5.516624e-04

Joint ci ratio: 8.426319e-02	ci left: 5.285310e-04	ci right 5.752732e-04	k: 2162	n:3920000
Cons ci ratio: 8.944843e-04	ci left: 8.301188e-01	ci right 8.308619e-01	k: 3255523	n:3920000
KS ci ratio: 1.656384e-01	ci left: 1.310249e-04	ci right 1.549279e-04	k: 559	n:3920000
NCOA6   3920000 perm   7402 sec   (530 perm/sec)   p_kst 1.426020e-04   p_cons 8.304906e-01   p_joint 5.515306e-04

Joint ci ratio: 8.414656e-02	ci left: 5.286807e-04	ci right 5.753682e-04	k: 2168	n:3930000
Cons ci ratio: 8.932962e-04	ci left: 8.301348e-01	ci right 8.308769e-01	k: 3263889	n:3930000
KS ci ratio: 1.653434e-01	ci left: 1.311793e-04	ci right 1.550636e-04	k: 561	n:3930000
NCOA6   3930000 perm   7436 sec   (529 perm/sec)   p_kst 1.427481e-04   p_cons 8.305061e-01   p_joint 5.516539e-04

Joint ci ratio: 8.397248e-02	ci left: 5.295751e-04	ci right 5.762401e-04	k: 2177	n:3940000
Cons ci ratio: 8.921700e-04	ci left: 8.301327e-01	ci right 8.308739e-01	k: 3272184	n:3940000
KS ci ratio: 1.650499e-01	ci left: 1.313330e-04	ci right 1.551986e-04	k: 563	n:3940000
NCOA6   3940000 perm   7470 sec   (527 perm/sec)   p_kst 1.428934e-04   p_cons 8.305036e-01   p_joint 5.525381e-04

Joint ci ratio: 8.499384e-02	ci left: 5.153478e-04	ci right 5.613389e-04	k: 2125	n:3950000
Cons ci ratio: 8.910696e-04	ci left: 8.301238e-01	ci right 8.308641e-01	k: 3280452	n:3950000
KS ci ratio: 1.650500e-01	ci left: 1.310005e-04	ci right 1.548057e-04	k: 563	n:3950000
NCOA6   3950000 perm   7504 sec   (526 perm/sec)   p_kst 1.425316e-04   p_cons 8.304942e-01   p_joint 5.379747e-04

Joint ci ratio: 8.493397e-02	ci left: 5.147879e-04	ci right 5.606950e-04	k: 2128	n:3960000
Cons ci ratio: 8.899581e-04	ci left: 8.301197e-01	ci right 8.308591e-01	k: 3288739	n:3960000
KS ci ratio: 1.649039e-01	ci left: 1.309118e-04	ci right 1.546777e-04	k: 564	n:3960000
NCOA6   3960000 perm   7537 sec   (525 perm/sec)   p_kst 1.424242e-04   p_cons 8.304896e-01   p_joint 5.373737e-04

Joint ci ratio: 8.487421e-02	ci left: 5.142308e-04	ci right 5.600544e-04	k: 2131	n:3970000
Cons ci ratio: 8.887896e-04	ci left: 8.301351e-01	ci right 8.308735e-01	k: 3297103	n:3970000
KS ci ratio: 1.647581e-01	ci left: 1.308235e-04	ci right 1.545504e-04	k: 565	n:3970000
NCOA6   3970000 perm   7571 sec   (524 perm/sec)   p_kst 1.423174e-04   p_cons 8.305045e-01   p_joint 5.367758e-04

Joint ci ratio: 8.535632e-02	ci left: 5.070369e-04	ci right 5.524889e-04	k: 2107	n:3980000
Cons ci ratio: 8.876692e-04	ci left: 8.301366e-01	ci right 8.308740e-01	k: 3305412	n:3980000
KS ci ratio: 1.646128e-01	ci left: 1.307357e-04	ci right 1.544237e-04	k: 566	n:3980000
NCOA6   3980000 perm   7606 sec   (523 perm/sec)   p_kst 1.422111e-04   p_cons 8.305055e-01   p_joint 5.293970e-04

Joint ci ratio: 8.527546e-02	ci left: 5.067472e-04	ci right 5.521281e-04	k: 2111	n:3990000
Cons ci ratio: 8.865814e-04	ci left: 8.301290e-01	ci right 8.308655e-01	k: 3313685	n:3990000
KS ci ratio: 1.644678e-01	ci left: 1.306484e-04	ci right 1.542976e-04	k: 567	n:3990000
NCOA6   3990000 perm   7640 sec   (522 perm/sec)   p_kst 1.421053e-04   p_cons 8.304975e-01   p_joint 5.290727e-04

Joint ci ratio: 8.523515e-02	ci left: 5.059697e-04	ci right 5.512584e-04	k: 2113	n:4000000
Cons ci ratio: 8.855220e-04	ci left: 8.301137e-01	ci right 8.308493e-01	k: 3321927	n:4000000
KS ci ratio: 1.644678e-01	ci left: 1.303217e-04	ci right 1.539119e-04	k: 567	n:4000000
NCOA6   4000000 perm   7674 sec   (521 perm/sec)   p_kst 1.417500e-04   p_cons 8.304818e-01   p_joint 5.282500e-04

Joint ci ratio: 8.511444e-02	ci left: 5.061723e-04	ci right 5.514118e-04	k: 2119	n:4010000
Cons ci ratio: 8.844162e-04	ci left: 8.301144e-01	ci right 8.308492e-01	k: 3330233	n:4010000
KS ci ratio: 1.643233e-01	ci left: 1.302359e-04	ci right 1.537877e-04	k: 568	n:4010000
NCOA6   4010000 perm   7708 sec   (520 perm/sec)   p_kst 1.416459e-04   p_cons 8.304820e-01   p_joint 5.284289e-04

Joint ci ratio: 8.499424e-02	ci left: 5.063740e-04	ci right 5.515644e-04	k: 2125	n:4020000
Cons ci ratio: 8.832998e-04	ci left: 8.301199e-01	ci right 8.308537e-01	k: 3338558	n:4020000
KS ci ratio: 1.641791e-01	ci left: 1.301504e-04	ci right 1.536641e-04	k: 569	n:4020000
NCOA6   4020000 perm   7743 sec   (519 perm/sec)   p_kst 1.415423e-04   p_cons 8.304871e-01   p_joint 5.286070e-04

Joint ci ratio: 8.481487e-02	ci left: 5.073033e-04	ci right 5.524764e-04	k: 2134	n:4030000
Cons ci ratio: 8.822054e-04	ci left: 8.301197e-01	ci right 8.308526e-01	k: 3346860	n:4030000
KS ci ratio: 1.638918e-01	ci left: 1.303034e-04	ci right 1.537994e-04	k: 571	n:4030000
NCOA6   4030000 perm   7792 sec   (517 perm/sec)   p_kst 1.416873e-04   p_cons 8.304864e-01   p_joint 5.295285e-04

Joint ci ratio: 8.465638e-02	ci left: 5.079858e-04	ci right 5.531311e-04	k: 2142	n:4040000
Cons ci ratio: 8.811260e-04	ci left: 8.301159e-01	ci right 8.308479e-01	k: 3355148	n:4040000
KS ci ratio: 1.637487e-01	ci left: 1.302182e-04	ci right 1.536764e-04	k: 572	n:4040000
NCOA6   4040000 perm   7827 sec   (516 perm/sec)   p_kst 1.415842e-04   p_cons 8.304822e-01   p_joint 5.301980e-04

Joint ci ratio: 8.457750e-02	ci left: 5.076983e-04	ci right 5.527739e-04	k: 2146	n:4050000
Cons ci ratio: 8.800427e-04	ci left: 8.301147e-01	ci right 8.308458e-01	k: 3363446	n:4050000
KS ci ratio: 1.636060e-01	ci left: 1.301335e-04	ci right 1.535540e-04	k: 573	n:4050000
NCOA6   4050000 perm   7861 sec   (515 perm/sec)   p_kst 1.414815e-04   p_cons 8.304805e-01   p_joint 5.298765e-04

Joint ci ratio: 8.442034e-02	ci left: 5.083766e-04	ci right 5.534244e-04	k: 2154	n:4060000
Cons ci ratio: 8.789720e-04	ci left: 8.301108e-01	ci right 8.308410e-01	k: 3371733	n:4060000
KS ci ratio: 1.634637e-01	ci left: 1.300492e-04	ci right 1.534321e-04	k: 574	n:4060000
NCOA6   4060000 perm   7899 sec   (514 perm/sec)   p_kst 1.413793e-04   p_cons 8.304761e-01   p_joint 5.305419e-04

Joint ci ratio: 8.432258e-02	ci left: 5.083301e-04	ci right 5.533191e-04	k: 2159	n:4070000
Cons ci ratio: 8.779158e-04	ci left: 8.301034e-01	ci right 8.308327e-01	k: 3380006	n:4070000
KS ci ratio: 1.631801e-01	ci left: 1.302010e-04	ci right 1.535666e-04	k: 576	n:4070000
NCOA6   4070000 perm   7934 sec   (513 perm/sec)   p_kst 1.415233e-04   p_cons 8.304683e-01   p_joint 5.304668e-04

Joint ci ratio: 8.424462e-02	ci left: 5.080440e-04	ci right 5.529639e-04	k: 2163	n:4080000
Cons ci ratio: 8.768406e-04	ci left: 8.301034e-01	ci right 8.308319e-01	k: 3388309	n:4080000
KS ci ratio: 1.628981e-01	ci left: 1.303521e-04	ci right 1.537004e-04	k: 578	n:4080000
NCOA6   4080000 perm   7973 sec   (512 perm/sec)   p_kst 1.416667e-04   p_cons 8.304679e-01   p_joint 5.301471e-04

Joint ci ratio: 8.405059e-02	ci left: 5.091953e-04	ci right 5.541084e-04	k: 2173	n:4090000
Cons ci ratio: 8.757548e-04	ci left: 8.301081e-01	ci right 8.308357e-01	k: 3396631	n:4090000
KS ci ratio: 1.623382e-01	ci left: 1.309715e-04	ci right 1.543424e-04	k: 582	n:4090000
NCOA6   4090000 perm   8010 sec   (511 perm/sec)   p_kst 1.422983e-04   p_cons 8.304721e-01   p_joint 5.312958e-04

Joint ci ratio: 8.391559e-02	ci left: 5.096249e-04	ci right 5.545000e-04	k: 2180	n:4100000
Cons ci ratio: 8.747246e-04	ci left: 8.300962e-01	ci right 8.308228e-01	k: 3404885	n:4100000
KS ci ratio: 1.620605e-01	ci left: 1.311201e-04	ci right 1.544735e-04	k: 584	n:4100000
NCOA6   4100000 perm   8045 sec   (510 perm/sec)   p_kst 1.424390e-04   p_cons 8.304598e-01   p_joint 5.317073e-04

Joint ci ratio: 8.434233e-02	ci left: 5.031447e-04	ci right 5.476856e-04	k: 2158	n:4110000
Cons ci ratio: 8.736376e-04	ci left: 8.301038e-01	ci right 8.308296e-01	k: 3413219	n:4110000
KS ci ratio: 1.619221e-01	ci left: 1.310345e-04	ci right 1.543508e-04	k: 585	n:4110000
NCOA6   4110000 perm   8081 sec   (509 perm/sec)   p_kst 1.423358e-04   p_cons 8.304669e-01   p_joint 5.250608e-04

Joint ci ratio: 8.430333e-02	ci left: 5.023986e-04	ci right 5.468519e-04	k: 2160	n:4120000
Cons ci ratio: 8.725246e-04	ci left: 8.301211e-01	ci right 8.308459e-01	k: 3421593	n:4120000
KS ci ratio: 1.617842e-01	ci left: 1.309494e-04	ci right 1.542287e-04	k: 586	n:4120000
NCOA6   4120000 perm   8116 sec   (508 perm/sec)   p_kst 1.422330e-04   p_cons 8.304837e-01   p_joint 5.242718e-04

Joint ci ratio: 8.416710e-02	ci left: 5.028414e-04	ci right 5.472584e-04	k: 2167	n:4130000
Cons ci ratio: 8.714158e-04	ci left: 8.301383e-01	ci right 8.308622e-01	k: 3429967	n:4130000
KS ci ratio: 1.613723e-01	ci left: 1.313293e-04	ci right 1.546110e-04	k: 589	n:4130000
NCOA6   4130000 perm   8152 sec   (507 perm/sec)   p_kst 1.426150e-04   p_cons 8.305005e-01   p_joint 5.246973e-04

Joint ci ratio: 8.408957e-02	ci left: 5.025726e-04	ci right 5.469231e-04	k: 2171	n:4140000
Cons ci ratio: 8.703500e-04	ci left: 8.301428e-01	ci right 8.308659e-01	k: 3438289	n:4140000
KS ci ratio: 1.610995e-01	ci left: 1.314757e-04	ci right 1.547401e-04	k: 591	n:4140000
NCOA6   4140000 perm   8189 sec   (506 perm/sec)   p_kst 1.427536e-04   p_cons 8.305046e-01   p_joint 5.243961e-04

Joint ci ratio: 8.403158e-02	ci left: 5.020693e-04	ci right 5.463433e-04	k: 2174	n:4150000
Cons ci ratio: 8.692815e-04	ci left: 8.301495e-01	ci right 8.308717e-01	k: 3446620	n:4150000
KS ci ratio: 1.610995e-01	ci left: 1.311589e-04	ci right 1.543673e-04	k: 591	n:4150000
NCOA6   4150000 perm   8233 sec   (504 perm/sec)   p_kst 1.424096e-04   p_cons 8.305108e-01   p_joint 5.238554e-04

Joint ci ratio: 8.395443e-02	ci left: 5.018038e-04	ci right 5.460117e-04	k: 2178	n:4160000
Cons ci ratio: 8.682013e-04	ci left: 8.301612e-01	ci right 8.308825e-01	k: 3454972	n:4160000
KS ci ratio: 1.609636e-01	ci left: 1.310743e-04	ci right 1.542462e-04	k: 592	n:4160000
NCOA6   4160000 perm   8271 sec   (503 perm/sec)   p_kst 1.423077e-04   p_cons 8.305221e-01   p_joint 5.235577e-04

Joint ci ratio: 8.391596e-02	ci left: 5.010699e-04	ci right 5.451920e-04	k: 2180	n:4170000
Cons ci ratio: 8.671679e-04	ci left: 8.301590e-01	ci right 8.308794e-01	k: 3463266	n:4170000
KS ci ratio: 1.608281e-01	ci left: 1.309901e-04	ci right 1.541258e-04	k: 593	n:4170000
NCOA6   4170000 perm   8310 sec   (502 perm/sec)   p_kst 1.422062e-04   p_cons 8.305194e-01   p_joint 5.227818e-04

Joint ci ratio: 8.385833e-02	ci left: 5.005738e-04	ci right 5.446205e-04	k: 2183	n:4180000
Cons ci ratio: 8.661103e-04	ci left: 8.301658e-01	ci right 8.308854e-01	k: 3471598	n:4180000
KS ci ratio: 1.606929e-01	ci left: 1.309064e-04	ci right 1.540059e-04	k: 594	n:4180000
NCOA6   4180000 perm   8346 sec   (501 perm/sec)   p_kst 1.421053e-04   p_cons 8.305258e-01   p_joint 5.222488e-04

Joint ci ratio: 8.376251e-02	ci left: 5.005475e-04	ci right 5.445390e-04	k: 2188	n:4190000
Cons ci ratio: 8.651005e-04	ci left: 8.301583e-01	ci right 8.308770e-01	k: 3479870	n:4190000
KS ci ratio: 1.606929e-01	ci left: 1.305939e-04	ci right 1.536384e-04	k: 594	n:4190000
NCOA6   4190000 perm   8386 sec   (500 perm/sec)   p_kst 1.417661e-04   p_cons 8.305179e-01   p_joint 5.221957e-04

Joint ci ratio: 8.362888e-02	ci left: 5.009875e-04	ci right 5.449440e-04	k: 2195	n:4200000
Cons ci ratio: 8.640409e-04	ci left: 8.301682e-01	ci right 8.308861e-01	k: 3488215	n:4200000
KS ci ratio: 1.604235e-01	ci left: 1.307401e-04	ci right 1.537679e-04	k: 596	n:4200000
NCOA6   4200000 perm   8424 sec   (499 perm/sec)   p_kst 1.419048e-04   p_cons 8.305274e-01   p_joint 5.226190e-04

Joint ci ratio: 8.355283e-02	ci left: 5.007277e-04	ci right 5.446196e-04	k: 2199	n:4210000
Cons ci ratio: 8.630282e-04	ci left: 8.301641e-01	ci right 8.308811e-01	k: 3496501	n:4210000
KS ci ratio: 1.600219e-01	ci left: 1.311135e-04	ci right 1.541438e-04	k: 599	n:4210000
NCOA6   4210000 perm   8462 sec   (498 perm/sec)   p_kst 1.422803e-04   p_cons 8.305228e-01   p_joint 5.223278e-04

Joint ci ratio: 8.407063e-02	ci left: 4.932771e-04	ci right 5.367969e-04	k: 2172	n:4220000
Cons ci ratio: 8.620131e-04	ci left: 8.301618e-01	ci right 8.308780e-01	k: 3504795	n:4220000
KS ci ratio: 1.598887e-01	ci left: 1.310303e-04	ci right 1.540249e-04	k: 600	n:4220000
NCOA6   4220000 perm   8502 sec   (496 perm/sec)   p_kst 1.421801e-04   p_cons 8.305201e-01   p_joint 5.146919e-04

Joint ci ratio: 8.397408e-02	ci left: 4.932681e-04	ci right 5.367348e-04	k: 2177	n:4230000
Cons ci ratio: 8.609591e-04	ci left: 8.301736e-01	ci right 8.308889e-01	k: 3513148	n:4230000
KS ci ratio: 1.594911e-01	ci left: 1.314014e-04	ci right 1.543984e-04	k: 603	n:4230000
NCOA6   4230000 perm   8542 sec   (495 perm/sec)   p_kst 1.425532e-04   p_cons 8.305314e-01   p_joint 5.146572e-04

Joint ci ratio: 8.385864e-02	ci left: 4.934902e-04	ci right 5.369137e-04	k: 2183	n:4240000
Cons ci ratio: 8.599232e-04	ci left: 8.301805e-01	ci right 8.308950e-01	k: 3521481	n:4240000
KS ci ratio: 1.594912e-01	ci left: 1.310915e-04	ci right 1.540342e-04	k: 603	n:4240000
NCOA6   4240000 perm   8580 sec   (494 perm/sec)   p_kst 1.422170e-04   p_cons 8.305380e-01   p_joint 5.148585e-04

Joint ci ratio: 8.424552e-02	ci left: 4.877220e-04	ci right 5.308456e-04	k: 2163	n:4250000
Cons ci ratio: 8.589651e-04	ci left: 8.301632e-01	ci right 8.308768e-01	k: 3529711	n:4250000
KS ci ratio: 1.593593e-01	ci left: 1.310090e-04	ci right 1.539165e-04	k: 604	n:4250000
NCOA6   4250000 perm   8619 sec   (493 perm/sec)   p_kst 1.421176e-04   p_cons 8.305202e-01   p_joint 5.089412e-04

Joint ci ratio: 8.410957e-02	ci left: 4.881857e-04	ci right 5.312773e-04	k: 2170	n:4260000
Cons ci ratio: 8.579858e-04	ci left: 8.301539e-01	ci right 8.308667e-01	k: 3537975	n:4260000
KS ci ratio: 1.590965e-01	ci left: 1.311522e-04	ci right 1.540433e-04	k: 606	n:4260000
NCOA6   4260000 perm   8659 sec   (492 perm/sec)   p_kst 1.422535e-04   p_cons 8.305106e-01   p_joint 5.093897e-04

Joint ci ratio: 8.401288e-02	ci left: 4.881888e-04	ci right 5.312286e-04	k: 2175	n:4270000
Cons ci ratio: 8.569906e-04	ci left: 8.301511e-01	ci right 8.308630e-01	k: 3546266	n:4270000
KS ci ratio: 1.589657e-01	ci left: 1.310700e-04	ci right 1.539261e-04	k: 607	n:4270000
NCOA6   4270000 perm   8697 sec   (491 perm/sec)   p_kst 1.421546e-04   p_cons 8.305073e-01   p_joint 5.093677e-04

Joint ci ratio: 8.397433e-02	ci left: 4.875056e-04	ci right 5.304646e-04	k: 2177	n:4280000
Cons ci ratio: 8.559846e-04	ci left: 8.301529e-01	ci right 8.308640e-01	k: 3554577	n:4280000
KS ci ratio: 1.587048e-01	ci left: 1.312124e-04	ci right 1.540523e-04	k: 609	n:4280000
NCOA6   4280000 perm   8734 sec   (490 perm/sec)   p_kst 1.422897e-04   p_cons 8.305086e-01   p_joint 5.086449e-04

Joint ci ratio: 8.382050e-02	ci left: 4.881949e-04	ci right 5.311320e-04	k: 2185	n:4290000
Cons ci ratio: 8.549971e-04	ci left: 8.301498e-01	ci right 8.308601e-01	k: 3562867	n:4290000
KS ci ratio: 1.583160e-01	ci left: 1.315781e-04	ci right 1.544202e-04	k: 612	n:4290000
NCOA6   4290000 perm   8772 sec   (489 perm/sec)   p_kst 1.426573e-04   p_cons 8.305051e-01   p_joint 5.093240e-04

Joint ci ratio: 8.378221e-02	ci left: 4.875149e-04	ci right 5.303716e-04	k: 2187	n:4300000
Cons ci ratio: 8.539297e-04	ci left: 8.301741e-01	ci right 8.308836e-01	k: 3571275	n:4300000
KS ci ratio: 1.581870e-01	ci left: 1.314955e-04	ci right 1.543028e-04	k: 613	n:4300000
NCOA6   4300000 perm   8810 sec   (488 perm/sec)   p_kst 1.425581e-04   p_cons 8.305291e-01   p_joint 5.086047e-04

Joint ci ratio: 8.370575e-02	ci left: 4.872924e-04	ci right 5.300886e-04	k: 2191	n:4310000
Cons ci ratio: 8.528979e-04	ci left: 8.301879e-01	ci right 8.308965e-01	k: 3579638	n:4310000
KS ci ratio: 1.578019e-01	ci left: 1.318589e-04	ci right 1.546684e-04	k: 616	n:4310000
NCOA6   4310000 perm   8847 sec   (487 perm/sec)   p_kst 1.429234e-04   p_cons 8.305425e-01   p_joint 5.083527e-04

Joint ci ratio: 8.361044e-02	ci left: 4.872977e-04	ci right 5.300431e-04	k: 2196	n:4320000
Cons ci ratio: 8.519133e-04	ci left: 8.301873e-01	ci right 8.308951e-01	k: 3587939	n:4320000
KS ci ratio: 1.575468e-01	ci left: 1.319984e-04	ci right 1.547916e-04	k: 618	n:4320000
NCOA6   4320000 perm   8885 sec   (486 perm/sec)   p_kst 1.430556e-04   p_cons 8.305414e-01   p_joint 5.083333e-04

Joint ci ratio: 8.351546e-02	ci left: 4.873029e-04	ci right 5.299979e-04	k: 2201	n:4330000
Cons ci ratio: 8.509656e-04	ci left: 8.301756e-01	ci right 8.308826e-01	k: 3596192	n:4330000
KS ci ratio: 1.571664e-01	ci left: 1.323591e-04	ci right 1.551542e-04	k: 621	n:4330000
NCOA6   4330000 perm   8923 sec   (485 perm/sec)   p_kst 1.434180e-04   p_cons 8.305293e-01   p_joint 5.083141e-04

Joint ci ratio: 8.345865e-02	ci left: 4.868568e-04	ci right 5.294824e-04	k: 2204	n:4340000
Cons ci ratio: 8.499876e-04	ci left: 8.301750e-01	ci right 8.308812e-01	k: 3604493	n:4340000
KS ci ratio: 1.570402e-01	ci left: 1.322755e-04	ci right 1.550361e-04	k: 622	n:4340000
NCOA6   4340000 perm   8960 sec   (484 perm/sec)   p_kst 1.433180e-04   p_cons 8.305283e-01   p_joint 5.078341e-04

Joint ci ratio: 8.328881e-02	ci left: 4.877635e-04	ci right 5.303772e-04	k: 2213	n:4350000
Cons ci ratio: 8.489693e-04	ci left: 8.301890e-01	ci right 8.308943e-01	k: 3612857	n:4350000
KS ci ratio: 1.567887e-01	ci left: 1.324131e-04	ci right 1.551575e-04	k: 624	n:4350000
NCOA6   4350000 perm   8998 sec   (483 perm/sec)   p_kst 1.434483e-04   p_cons 8.305418e-01   p_joint 5.087356e-04

Joint ci ratio: 8.315744e-02	ci left: 4.882168e-04	ci right 5.307997e-04	k: 2220	n:4360000
Cons ci ratio: 8.479699e-04	ci left: 8.301978e-01	ci right 8.309023e-01	k: 3621199	n:4360000
KS ci ratio: 1.562893e-01	ci left: 1.329909e-04	ci right 1.557550e-04	k: 628	n:4360000
NCOA6   4360000 perm   9036 sec   (483 perm/sec)   p_kst 1.440367e-04   p_cons 8.305502e-01   p_joint 5.091743e-04

Joint ci ratio: 8.304533e-02	ci left: 4.884441e-04	ci right 5.309866e-04	k: 2226	n:4370000
Cons ci ratio: 8.470312e-04	ci left: 8.301875e-01	ci right 8.308912e-01	k: 3629458	n:4370000
KS ci ratio: 1.562894e-01	ci left: 1.326866e-04	ci right 1.553986e-04	k: 628	n:4370000
NCOA6   4370000 perm   9072 sec   (482 perm/sec)   p_kst 1.437071e-04   p_cons 8.305396e-01   p_joint 5.093822e-04

Joint ci ratio: 8.289654e-02	ci left: 4.891175e-04	ci right 5.316386e-04	k: 2234	n:4380000
Cons ci ratio: 8.460667e-04	ci left: 8.301869e-01	ci right 8.308898e-01	k: 3637759	n:4380000
KS ci ratio: 1.559180e-01	ci left: 1.330418e-04	ci right 1.557555e-04	k: 631	n:4380000
NCOA6   4380000 perm   9112 sec   (481 perm/sec)   p_kst 1.440639e-04   p_cons 8.305386e-01   p_joint 5.100457e-04

Joint ci ratio: 8.282247e-02	ci left: 4.888957e-04	ci right 5.313576e-04	k: 2238	n:4390000
Cons ci ratio: 8.450959e-04	ci left: 8.301895e-01	ci right 8.308916e-01	k: 3646074	n:4390000
KS ci ratio: 1.557948e-01	ci left: 1.329577e-04	ci right 1.556373e-04	k: 632	n:4390000
NCOA6   4390000 perm   9149 sec   (480 perm/sec)   p_kst 1.439636e-04   p_cons 8.305408e-01   p_joint 5.097950e-04

Joint ci ratio: 8.308281e-02	ci left: 4.846687e-04	ci right 5.269023e-04	k: 2224	n:4400000
Cons ci ratio: 8.441347e-04	ci left: 8.301900e-01	ci right 8.308913e-01	k: 3654380	n:4400000
KS ci ratio: 1.556719e-01	ci left: 1.328739e-04	ci right 1.555197e-04	k: 633	n:4400000
NCOA6   4400000 perm   9188 sec   (479 perm/sec)   p_kst 1.438636e-04   p_cons 8.305409e-01   p_joint 5.054545e-04

Joint ci ratio: 8.295241e-02	ci left: 4.851240e-04	ci right 5.273277e-04	k: 2231	n:4410000
Cons ci ratio: 8.431773e-04	ci left: 8.301903e-01	ci right 8.308909e-01	k: 3662685	n:4410000
KS ci ratio: 1.554269e-01	ci left: 1.330085e-04	ci right 1.556382e-04	k: 635	n:4410000
NCOA6   4410000 perm   9226 sec   (478 perm/sec)   p_kst 1.439909e-04   p_cons 8.305408e-01   p_joint 5.058957e-04

Joint ci ratio: 8.280412e-02	ci left: 4.857989e-04	ci right 5.279821e-04	k: 2239	n:4420000
Cons ci ratio: 8.421908e-04	ci left: 8.302015e-01	ci right 8.309012e-01	k: 3671038	n:4420000
KS ci ratio: 1.551831e-01	ci left: 1.331425e-04	ci right 1.557562e-04	k: 637	n:4420000
NCOA6   4420000 perm   9263 sec   (477 perm/sec)   p_kst 1.441176e-04   p_cons 8.305516e-01   p_joint 5.065611e-04

Joint ci ratio: 8.273029e-02	ci left: 4.855865e-04	ci right 5.277119e-04	k: 2243	n:4430000
Cons ci ratio: 8.412454e-04	ci left: 8.302000e-01	ci right 8.308989e-01	k: 3679335	n:4430000
KS ci ratio: 1.550616e-01	ci left: 1.330589e-04	ci right 1.556391e-04	k: 638	n:4430000
NCOA6   4430000 perm   9303 sec   (476 perm/sec)   p_kst 1.440181e-04   p_cons 8.305497e-01   p_joint 5.063205e-04

Joint ci ratio: 8.184117e-02	ci left: 4.953019e-04	ci right 5.377863e-04	k: 2292	n:4440000
Cons ci ratio: 8.403079e-04	ci left: 8.301969e-01	ci right 8.308950e-01	k: 3687625	n:4440000
KS ci ratio: 1.482563e-01	ci left: 1.457603e-04	ci right 1.693141e-04	k: 698	n:4440000
NCOA6   4440000 perm   9342 sec   (475 perm/sec)   p_kst 1.572072e-04   p_cons 8.305462e-01   p_joint 5.162162e-04

Joint ci ratio: 8.176989e-02	ci left: 4.950694e-04	ci right 5.374951e-04	k: 2296	n:4450000
Cons ci ratio: 8.393321e-04	ci left: 8.302078e-01	ci right 8.309051e-01	k: 3695977	n:4450000
KS ci ratio: 1.480447e-01	ci left: 1.458655e-04	ci right 1.693997e-04	k: 700	n:4450000
NCOA6   4450000 perm   9384 sec   (474 perm/sec)   p_kst 1.573034e-04   p_cons 8.305566e-01   p_joint 5.159551e-04

Joint ci ratio: 8.166329e-02	ci left: 4.952771e-04	ci right 5.376627e-04	k: 2302	n:4460000
Cons ci ratio: 8.384070e-04	ci left: 8.302026e-01	ci right 8.308992e-01	k: 3704258	n:4460000
KS ci ratio: 1.480447e-01	ci left: 1.455384e-04	ci right 1.690199e-04	k: 700	n:4460000
NCOA6   4460000 perm   9423 sec   (473 perm/sec)   p_kst 1.569507e-04   p_cons 8.305511e-01   p_joint 5.161435e-04

Joint ci ratio: 8.182346e-02	ci left: 4.921968e-04	ci right 5.344053e-04	k: 2293	n:4470000
Cons ci ratio: 8.374830e-04	ci left: 8.301982e-01	ci right 8.308940e-01	k: 3712542	n:4470000
KS ci ratio: 1.478340e-01	ci left: 1.456437e-04	ci right 1.691058e-04	k: 702	n:4470000
NCOA6   4470000 perm   9461 sec   (472 perm/sec)   p_kst 1.570470e-04   p_cons 8.305463e-01   p_joint 5.129754e-04

Joint ci ratio: 8.173444e-02	ci left: 4.921914e-04	ci right 5.343513e-04	k: 2298	n:4480000
Cons ci ratio: 8.365454e-04	ci left: 8.301994e-01	ci right 8.308944e-01	k: 3720851	n:4480000
KS ci ratio: 1.476241e-01	ci left: 1.457485e-04	ci right 1.691912e-04	k: 704	n:4480000
NCOA6   4480000 perm   9500 sec   (472 perm/sec)   p_kst 1.571429e-04   p_cons 8.305471e-01   p_joint 5.129464e-04

Joint ci ratio: 8.200257e-02	ci left: 4.878228e-04	ci right 5.297522e-04	k: 2283	n:4490000
Cons ci ratio: 8.356711e-04	ci left: 8.301803e-01	ci right 8.308745e-01	k: 3729069	n:4490000
KS ci ratio: 1.476241e-01	ci left: 1.454239e-04	ci right 1.688144e-04	k: 704	n:4490000
NCOA6   4490000 perm   9539 sec   (471 perm/sec)   p_kst 1.567929e-04   p_cons 8.305276e-01   p_joint 5.084633e-04

Joint ci ratio: 8.193087e-02	ci left: 4.876095e-04	ci right 5.294821e-04	k: 2287	n:4500000
Cons ci ratio: 8.347212e-04	ci left: 8.301877e-01	ci right 8.308812e-01	k: 3737406	n:4500000
KS ci ratio: 1.475196e-01	ci left: 1.453148e-04	ci right 1.686697e-04	k: 705	n:4500000
NCOA6   4500000 perm   9580 sec   (470 perm/sec)   p_kst 1.566667e-04   p_cons 8.305347e-01   p_joint 5.082222e-04

Joint ci ratio: 8.434430e-02	ci left: 4.585194e-04	ci right 4.991109e-04	k: 2158	n:4510000
Cons ci ratio: 8.337850e-04	ci left: 8.301916e-01	ci right 8.308843e-01	k: 3745727	n:4510000
KS ci ratio: 1.474152e-01	ci left: 1.452061e-04	ci right 1.685256e-04	k: 706	n:4510000
NCOA6   4510000 perm   9619 sec   (469 perm/sec)   p_kst 1.565410e-04   p_cons 8.305381e-01   p_joint 4.784922e-04

Joint ci ratio: 8.568497e-02	ci left: 4.429969e-04	ci right 4.828688e-04	k: 2091	n:4520000
Cons ci ratio: 8.328788e-04	ci left: 8.301863e-01	ci right 8.308783e-01	k: 3754007	n:4520000
KS ci ratio: 1.472071e-01	ci left: 1.453110e-04	ci right 1.686115e-04	k: 708	n:4520000
NCOA6   4520000 perm   9661 sec   (468 perm/sec)   p_kst 1.566372e-04   p_cons 8.305325e-01   p_joint 4.626106e-04

Joint ci ratio: 8.580821e-02	ci left: 4.407229e-04	ci right 4.804500e-04	k: 2085	n:4530000
Cons ci ratio: 8.319448e-04	ci left: 8.301915e-01	ci right 8.308827e-01	k: 3762334	n:4530000
KS ci ratio: 1.469999e-01	ci left: 1.454155e-04	ci right 1.686971e-04	k: 710	n:4530000
NCOA6   4530000 perm   9701 sec   (467 perm/sec)   p_kst 1.567329e-04   p_cons 8.305373e-01   p_joint 4.602649e-04

Joint ci ratio: 8.576713e-02	ci left: 4.401832e-04	ci right 4.798417e-04	k: 2087	n:4540000
Cons ci ratio: 8.310823e-04	ci left: 8.301735e-01	ci right 8.308640e-01	k: 3770556	n:4540000
KS ci ratio: 1.467936e-01	ci left: 1.455196e-04	ci right 1.687822e-04	k: 712	n:4540000
NCOA6   4540000 perm   9740 sec   (466 perm/sec)   p_kst 1.568282e-04   p_cons 8.305189e-01   p_joint 4.596916e-04

Joint ci ratio: 8.570560e-02	ci left: 4.398610e-04	ci right 4.794606e-04	k: 2090	n:4550000
Cons ci ratio: 8.301907e-04	ci left: 8.301664e-01	ci right 8.308561e-01	k: 3778827	n:4550000
KS ci ratio: 1.465882e-01	ci left: 1.456232e-04	ci right 1.688669e-04	k: 714	n:4550000
NCOA6   4550000 perm   9778 sec   (465 perm/sec)   p_kst 1.569231e-04   p_cons 8.305114e-01   p_joint 4.593407e-04

Joint ci ratio: 8.566466e-02	ci left: 4.393256e-04	ci right 4.788571e-04	k: 2092	n:4560000
Cons ci ratio: 8.292735e-04	ci left: 8.301689e-01	ci right 8.308579e-01	k: 3787142	n:4560000
KS ci ratio: 1.465882e-01	ci left: 1.453038e-04	ci right 1.684966e-04	k: 714	n:4560000
NCOA6   4560000 perm   9817 sec   (465 perm/sec)   p_kst 1.565789e-04   p_cons 8.305136e-01   p_joint 4.587719e-04

Joint ci ratio: 8.558293e-02	ci left: 4.392208e-04	ci right 4.787033e-04	k: 2096	n:4570000
Cons ci ratio: 8.283967e-04	ci left: 8.301588e-01	ci right 8.308470e-01	k: 3795399	n:4570000
KS ci ratio: 1.464858e-01	ci left: 1.451967e-04	ci right 1.683547e-04	k: 715	n:4570000
NCOA6   4570000 perm   9856 sec   (464 perm/sec)   p_kst 1.564551e-04   p_cons 8.305031e-01   p_joint 4.586433e-04

Joint ci ratio: 8.550143e-02	ci left: 4.391164e-04	ci right 4.785501e-04	k: 2100	n:4580000
Cons ci ratio: 8.274572e-04	ci left: 8.301709e-01	ci right 8.308583e-01	k: 3803758	n:4580000
KS ci ratio: 1.462816e-01	ci left: 1.453003e-04	ci right 1.684398e-04	k: 717	n:4580000
NCOA6   4580000 perm   9896 sec   (463 perm/sec)   p_kst 1.565502e-04   p_cons 8.305148e-01   p_joint 4.585153e-04

Joint ci ratio: 8.544046e-02	ci left: 4.387994e-04	ci right 4.781751e-04	k: 2103	n:4590000
Cons ci ratio: 8.265375e-04	ci left: 8.301774e-01	ci right 8.308640e-01	k: 3812091	n:4590000
KS ci ratio: 1.460783e-01	ci left: 1.454036e-04	ci right 1.685245e-04	k: 719	n:4590000
NCOA6   4590000 perm   9938 sec   (462 perm/sec)   p_kst 1.566449e-04   p_cons 8.305209e-01   p_joint 4.581699e-04

Joint ci ratio: 8.535937e-02	ci left: 4.386965e-04	ci right 4.780237e-04	k: 2107	n:4600000
Cons ci ratio: 8.256579e-04	ci left: 8.301712e-01	ci right 8.308571e-01	k: 3820366	n:4600000
KS ci ratio: 1.459770e-01	ci left: 1.452969e-04	ci right 1.683835e-04	k: 720	n:4600000
NCOA6   4600000 perm   9977 sec   (461 perm/sec)   p_kst 1.565217e-04   p_cons 8.305143e-01   p_joint 4.580435e-04

Joint ci ratio: 8.527850e-02	ci left: 4.385940e-04	ci right 4.778730e-04	k: 2111	n:4610000
Cons ci ratio: 8.247150e-04	ci left: 8.301876e-01	ci right 8.308727e-01	k: 3828745	n:4610000
KS ci ratio: 1.457749e-01	ci left: 1.453997e-04	ci right 1.684679e-04	k: 722	n:4610000
NCOA6   4610000 perm   10023 sec   (460 perm/sec)   p_kst 1.566161e-04   p_cons 8.305304e-01   p_joint 4.579176e-04

Joint ci ratio: 8.509734e-02	ci left: 4.395512e-04	ci right 4.788282e-04	k: 2120	n:4620000
Cons ci ratio: 8.237657e-04	ci left: 8.302072e-01	ci right 8.308916e-01	k: 3837139	n:4620000
KS ci ratio: 1.453733e-01	ci left: 1.459193e-04	ci right 1.690005e-04	k: 726	n:4620000
NCOA6   4620000 perm   10062 sec   (459 perm/sec)   p_kst 1.571429e-04   p_cons 8.305496e-01   p_joint 4.588745e-04

Joint ci ratio: 8.505727e-02	ci left: 4.390247e-04	ci right 4.782351e-04	k: 2122	n:4630000
Cons ci ratio: 8.228873e-04	ci left: 8.302035e-01	ci right 8.308872e-01	k: 3845426	n:4630000
KS ci ratio: 1.451737e-01	ci left: 1.460204e-04	ci right 1.690832e-04	k: 728	n:4630000
NCOA6   4630000 perm   10102 sec   (458 perm/sec)   p_kst 1.572354e-04   p_cons 8.305456e-01   p_joint 4.583153e-04

Joint ci ratio: 8.550168e-02	ci left: 4.334382e-04	ci right 4.723620e-04	k: 2100	n:4640000
Cons ci ratio: 8.220099e-04	ci left: 8.302006e-01	ci right 8.308835e-01	k: 3853716	n:4640000
KS ci ratio: 1.449750e-01	ci left: 1.461211e-04	ci right 1.691654e-04	k: 730	n:4640000
NCOA6   4640000 perm   10144 sec   (457 perm/sec)   p_kst 1.573276e-04   p_cons 8.305422e-01   p_joint 4.525862e-04

Joint ci ratio: 8.546104e-02	ci left: 4.329269e-04	ci right 4.717855e-04	k: 2102	n:4650000
Cons ci ratio: 8.210975e-04	ci left: 8.302105e-01	ci right 8.308927e-01	k: 3862066	n:4650000
KS ci ratio: 1.449750e-01	ci left: 1.458068e-04	ci right 1.688016e-04	k: 730	n:4650000
NCOA6   4650000 perm   10183 sec   (457 perm/sec)   p_kst 1.569892e-04   p_cons 8.305518e-01   p_joint 4.520430e-04

Joint ci ratio: 8.525852e-02	ci left: 4.340980e-04	ci right 4.729648e-04	k: 2112	n:4660000
Cons ci ratio: 8.201739e-04	ci left: 8.302254e-01	ci right 8.309068e-01	k: 3870439	n:4660000
KS ci ratio: 1.444817e-01	ci left: 1.465281e-04	ci right 1.695512e-04	k: 735	n:4660000
NCOA6   4660000 perm   10227 sec   (456 perm/sec)   p_kst 1.577253e-04   p_cons 8.305663e-01   p_joint 4.532189e-04

Joint ci ratio: 8.507748e-02	ci left: 4.350547e-04	ci right 4.739203e-04	k: 2121	n:4670000
Cons ci ratio: 8.192857e-04	ci left: 8.302291e-01	ci right 8.309097e-01	k: 3878760	n:4670000
KS ci ratio: 1.443836e-01	ci left: 1.464207e-04	ci right 1.694100e-04	k: 736	n:4670000
NCOA6   4670000 perm   10266 sec   (455 perm/sec)   p_kst 1.576017e-04   p_cons 8.305696e-01   p_joint 4.541756e-04

Joint ci ratio: 8.497742e-02	ci left: 4.351707e-04	ci right 4.739987e-04	k: 2126	n:4680000
Cons ci ratio: 8.184060e-04	ci left: 8.302308e-01	ci right 8.309107e-01	k: 3887072	n:4680000
KS ci ratio: 1.441881e-01	ci left: 1.465198e-04	ci right 1.694908e-04	k: 738	n:4680000
NCOA6   4680000 perm   10309 sec   (454 perm/sec)   p_kst 1.576923e-04   p_cons 8.305709e-01   p_joint 4.542735e-04

Joint ci ratio: 8.485781e-02	ci left: 4.354950e-04	ci right 4.742945e-04	k: 2132	n:4690000
Cons ci ratio: 8.175075e-04	ci left: 8.302399e-01	ci right 8.309191e-01	k: 3895419	n:4690000
KS ci ratio: 1.439934e-01	ci left: 1.466184e-04	ci right 1.695712e-04	k: 740	n:4690000
NCOA6   4690000 perm   10353 sec   (453 perm/sec)   p_kst 1.577825e-04   p_cons 8.305797e-01   p_joint 4.545842e-04

Joint ci ratio: 8.483796e-02	ci left: 4.347767e-04	ci right 4.735027e-04	k: 2133	n:4700000
Cons ci ratio: 8.166205e-04	ci left: 8.302461e-01	ci right 8.309246e-01	k: 3903752	n:4700000
KS ci ratio: 1.439934e-01	ci left: 1.463065e-04	ci right 1.692104e-04	k: 740	n:4700000
NCOA6   4700000 perm   10395 sec   (452 perm/sec)   p_kst 1.574468e-04   p_cons 8.305855e-01   p_joint 4.538298e-04

Joint ci ratio: 8.481812e-02	ci left: 4.340614e-04	ci right 4.727142e-04	k: 2134	n:4710000
Cons ci ratio: 8.157906e-04	ci left: 8.302335e-01	ci right 8.309113e-01	k: 3911997	n:4710000
KS ci ratio: 1.439935e-01	ci left: 1.459958e-04	ci right 1.688511e-04	k: 740	n:4710000
NCOA6   4710000 perm   10437 sec   (451 perm/sec)   p_kst 1.571125e-04   p_cons 8.305726e-01   p_joint 4.530786e-04

Joint ci ratio: 8.473878e-02	ci left: 4.339712e-04	ci right 4.725781e-04	k: 2138	n:4720000
Cons ci ratio: 8.149368e-04	ci left: 8.302301e-01	ci right 8.309072e-01	k: 3920285	n:4720000
KS ci ratio: 1.437995e-01	ci left: 1.460950e-04	ci right 1.689324e-04	k: 742	n:4720000
NCOA6   4720000 perm   10480 sec   (450 perm/sec)   p_kst 1.572034e-04   p_cons 8.305689e-01   p_joint 4.529661e-04

Joint ci ratio: 8.467943e-02	ci left: 4.336746e-04	ci right 4.722267e-04	k: 2141	n:4730000
Cons ci ratio: 8.140986e-04	ci left: 8.302223e-01	ci right 8.308987e-01	k: 3928552	n:4730000
KS ci ratio: 1.436064e-01	ci left: 1.461938e-04	ci right 1.690133e-04	k: 744	n:4730000
NCOA6   4730000 perm   10523 sec   (449 perm/sec)   p_kst 1.572939e-04   p_cons 8.305607e-01   p_joint 4.526427e-04

Joint ci ratio: 8.138219e-02	ci left: 4.693267e-04	ci right 5.093466e-04	k: 2318	n:4740000
Cons ci ratio: 8.132239e-04	ci left: 8.302280e-01	ci right 8.309036e-01	k: 3936883	n:4740000
KS ci ratio: 1.432224e-01	ci left: 1.466989e-04	ci right 1.695308e-04	k: 748	n:4740000
NCOA6   4740000 perm   10565 sec   (449 perm/sec)   p_kst 1.578059e-04   p_cons 8.305660e-01   p_joint 4.890295e-04

Joint ci ratio: 8.127711e-02	ci left: 4.695761e-04	ci right 5.095632e-04	k: 2324	n:4750000
Cons ci ratio: 8.123605e-04	ci left: 8.302308e-01	ci right 8.309057e-01	k: 3945200	n:4750000
KS ci ratio: 1.432224e-01	ci left: 1.463901e-04	ci right 1.691739e-04	k: 748	n:4750000
NCOA6   4750000 perm   10605 sec   (448 perm/sec)   p_kst 1.574737e-04   p_cons 8.305684e-01   p_joint 4.892632e-04

Joint ci ratio: 8.124219e-02	ci left: 4.690013e-04	ci right 5.089214e-04	k: 2326	n:4760000
Cons ci ratio: 8.115060e-04	ci left: 8.302314e-01	ci right 8.309056e-01	k: 3953507	n:4760000
KS ci ratio: 1.431269e-01	ci left: 1.462851e-04	ci right 1.690361e-04	k: 749	n:4760000
NCOA6   4760000 perm   10647 sec   (447 perm/sec)   p_kst 1.573529e-04   p_cons 8.305687e-01   p_joint 4.886555e-04

Joint ci ratio: 8.108551e-02	ci left: 4.698665e-04	ci right 5.097795e-04	k: 2335	n:4770000
Cons ci ratio: 8.106625e-04	ci left: 8.302291e-01	ci right 8.309026e-01	k: 3961800	n:4770000
KS ci ratio: 1.426521e-01	ci left: 1.469892e-04	ci right 1.697674e-04	k: 754	n:4770000
NCOA6   4770000 perm   10692 sec   (446 perm/sec)   p_kst 1.580713e-04   p_cons 8.305660e-01   p_joint 4.895178e-04

Joint ci ratio: 8.089521e-02	ci left: 4.711382e-04	ci right 5.110609e-04	k: 2346	n:4780000
Cons ci ratio: 8.097965e-04	ci left: 8.302356e-01	ci right 8.309084e-01	k: 3970135	n:4780000
KS ci ratio: 1.421820e-01	ci left: 1.476904e-04	ci right 1.704955e-04	k: 759	n:4780000
NCOA6   4780000 perm   10733 sec   (445 perm/sec)   p_kst 1.587866e-04   p_cons 8.305722e-01   p_joint 4.907950e-04

Joint ci ratio: 8.080918e-02	ci left: 4.711774e-04	ci right 5.110589e-04	k: 2351	n:4790000
Cons ci ratio: 8.089428e-04	ci left: 8.302387e-01	ci right 8.309108e-01	k: 3978454	n:4790000
KS ci ratio: 1.419953e-01	ci left: 1.477848e-04	ci right 1.705719e-04	k: 761	n:4790000
NCOA6   4790000 perm   10775 sec   (445 perm/sec)   p_kst 1.588727e-04   p_cons 8.305749e-01   p_joint 4.908142e-04

Joint ci ratio: 8.074056e-02	ci left: 4.710123e-04	ci right 5.108443e-04	k: 2355	n:4800000
Cons ci ratio: 8.080899e-04	ci left: 8.302424e-01	ci right 8.309138e-01	k: 3986776	n:4800000
KS ci ratio: 1.419953e-01	ci left: 1.474769e-04	ci right 1.702166e-04	k: 761	n:4800000
NCOA6   4800000 perm   10817 sec   (444 perm/sec)   p_kst 1.585417e-04   p_cons 8.305783e-01   p_joint 4.906250e-04

Joint ci ratio: 8.060380e-02	ci left: 4.716627e-04	ci right 5.114790e-04	k: 2363	n:4810000
Cons ci ratio: 8.072559e-04	ci left: 8.302406e-01	ci right 8.309112e-01	k: 3995071	n:4810000
KS ci ratio: 1.415317e-01	ci left: 1.481729e-04	ci right 1.709390e-04	k: 766	n:4810000
NCOA6   4810000 perm   10860 sec   (443 perm/sec)   p_kst 1.592516e-04   p_cons 8.305761e-01   p_joint 4.912682e-04

Joint ci ratio: 8.050170e-02	ci left: 4.719039e-04	ci right 5.116877e-04	k: 2369	n:4820000
Cons ci ratio: 8.063674e-04	ci left: 8.302586e-01	ci right 8.309286e-01	k: 4003462	n:4820000
KS ci ratio: 1.414395e-01	ci left: 1.480656e-04	ci right 1.707992e-04	k: 767	n:4820000
NCOA6   4820000 perm   10902 sec   (442 perm/sec)   p_kst 1.591286e-04   p_cons 8.305938e-01   p_joint 4.914938e-04

Joint ci ratio: 8.036615e-02	ci left: 4.725498e-04	ci right 5.123180e-04	k: 2377	n:4830000
Cons ci ratio: 8.055316e-04	ci left: 8.302592e-01	ci right 8.309284e-01	k: 4011769	n:4830000
KS ci ratio: 1.411641e-01	ci left: 1.483583e-04	ci right 1.710886e-04	k: 770	n:4830000
NCOA6   4830000 perm   10947 sec   (441 perm/sec)   p_kst 1.594203e-04   p_cons 8.305940e-01   p_joint 4.921325e-04

Joint ci ratio: 8.019766e-02	ci left: 4.735981e-04	ci right 5.133670e-04	k: 2387	n:4840000
Cons ci ratio: 8.046860e-04	ci left: 8.302641e-01	ci right 8.309326e-01	k: 4020097	n:4840000
KS ci ratio: 1.408902e-01	ci left: 1.486497e-04	ci right 1.713768e-04	k: 773	n:4840000
NCOA6   4840000 perm   10991 sec   (440 perm/sec)   p_kst 1.597107e-04   p_cons 8.305986e-01   p_joint 4.931818e-04

Joint ci ratio: 8.011383e-02	ci left: 4.736319e-04	ci right 5.133601e-04	k: 2392	n:4850000
Cons ci ratio: 8.038289e-04	ci left: 8.302739e-01	ci right 8.309418e-01	k: 4028449	n:4850000
KS ci ratio: 1.404373e-01	ci left: 1.493379e-04	ci right 1.720907e-04	k: 778	n:4850000
NCOA6   4850000 perm   11042 sec   (439 perm/sec)   p_kst 1.604124e-04   p_cons 8.306080e-01   p_joint 4.931959e-04

Joint ci ratio: 7.999690e-02	ci left: 4.740689e-04	ci right 5.137730e-04	k: 2399	n:4860000
Cons ci ratio: 8.029980e-04	ci left: 8.302755e-01	ci right 8.309426e-01	k: 4036761	n:4860000
KS ci ratio: 1.402573e-01	ci left: 1.494276e-04	ci right 1.721625e-04	k: 780	n:4860000
NCOA6   4860000 perm   11091 sec   (438 perm/sec)   p_kst 1.604938e-04   p_cons 8.306093e-01   p_joint 4.936214e-04

Joint ci ratio: 7.989708e-02	ci left: 4.743028e-04	ci right 5.139747e-04	k: 2405	n:4870000
Cons ci ratio: 8.021586e-04	ci left: 8.302809e-01	ci right 8.309474e-01	k: 4045092	n:4870000
KS ci ratio: 1.402574e-01	ci left: 1.491208e-04	ci right 1.718090e-04	k: 780	n:4870000
NCOA6   4870000 perm   11137 sec   (437 perm/sec)   p_kst 1.601643e-04   p_cons 8.306144e-01   p_joint 4.938398e-04

Joint ci ratio: 7.984733e-02	ci left: 4.739334e-04	ci right 5.135485e-04	k: 2408	n:4880000
Cons ci ratio: 8.013182e-04	ci left: 8.302876e-01	ci right 8.309534e-01	k: 4053429	n:4880000
KS ci ratio: 1.401677e-01	ci left: 1.490130e-04	ci right 1.716691e-04	k: 781	n:4880000
NCOA6   4880000 perm   11178 sec   (437 perm/sec)   p_kst 1.600410e-04   p_cons 8.306207e-01   p_joint 4.934426e-04

Joint ci ratio: 7.974807e-02	ci left: 4.741667e-04	ci right 5.137497e-04	k: 2414	n:4890000
Cons ci ratio: 8.005352e-04	ci left: 8.302750e-01	ci right 8.309401e-01	k: 4061672	n:4890000
KS ci ratio: 1.400781e-01	ci left: 1.489056e-04	ci right 1.715297e-04	k: 782	n:4890000
NCOA6   4890000 perm   11220 sec   (436 perm/sec)   p_kst 1.599182e-04   p_cons 8.306078e-01   p_joint 4.936605e-04

Joint ci ratio: 7.968212e-02	ci left: 4.739991e-04	ci right 5.135339e-04	k: 2418	n:4900000
Cons ci ratio: 7.996994e-04	ci left: 8.302819e-01	ci right 8.309463e-01	k: 4070010	n:4900000
KS ci ratio: 1.399888e-01	ci left: 1.487986e-04	ci right 1.713908e-04	k: 783	n:4900000
NCOA6   4900000 perm   11265 sec   (435 perm/sec)   p_kst 1.597959e-04   p_cons 8.306143e-01   p_joint 4.934694e-04

Joint ci ratio: 7.959989e-02	ci left: 4.740317e-04	ci right 5.135266e-04	k: 2423	n:4910000
Cons ci ratio: 7.988940e-04	ci left: 8.302789e-01	ci right 8.309427e-01	k: 4078300	n:4910000
KS ci ratio: 1.398106e-01	ci left: 1.488886e-04	ci right 1.714633e-04	k: 785	n:4910000
NCOA6   4910000 perm   11310 sec   (434 perm/sec)   p_kst 1.598778e-04   p_cons 8.306110e-01   p_joint 4.934827e-04

Joint ci ratio: 7.953431e-02	ci left: 4.738651e-04	ci right 5.133120e-04	k: 2427	n:4920000
Cons ci ratio: 7.980985e-04	ci left: 8.302733e-01	ci right 8.309364e-01	k: 4086577	n:4920000
KS ci ratio: 1.397217e-01	ci left: 1.487822e-04	ci right 1.713252e-04	k: 786	n:4920000
NCOA6   4920000 perm   11351 sec   (433 perm/sec)   p_kst 1.597561e-04   p_cons 8.306051e-01   p_joint 4.932927e-04

Joint ci ratio: 8.031588e-02	ci left: 4.635609e-04	ci right 5.025470e-04	k: 2380	n:4930000
Cons ci ratio: 7.973030e-04	ci left: 8.302686e-01	ci right 8.309310e-01	k: 4094858	n:4930000
KS ci ratio: 1.396330e-01	ci left: 1.486761e-04	ci right 1.711876e-04	k: 787	n:4930000
NCOA6   4930000 perm   11394 sec   (433 perm/sec)   p_kst 1.596349e-04   p_cons 8.306000e-01   p_joint 4.827586e-04

Joint ci ratio: 8.026535e-02	ci left: 4.632176e-04	ci right 5.021491e-04	k: 2383	n:4940000
Cons ci ratio: 7.965140e-04	ci left: 8.302624e-01	ci right 8.309242e-01	k: 4103132	n:4940000
KS ci ratio: 1.394562e-01	ci left: 1.487659e-04	ci right 1.712601e-04	k: 789	n:4940000
NCOA6   4940000 perm   11437 sec   (432 perm/sec)   p_kst 1.597166e-04   p_cons 8.305935e-01   p_joint 4.823887e-04

Joint ci ratio: 8.021491e-02	ci left: 4.628757e-04	ci right 5.017529e-04	k: 2386	n:4950000
Cons ci ratio: 7.956924e-04	ci left: 8.302687e-01	ci right 8.309297e-01	k: 4111467	n:4950000
KS ci ratio: 1.392800e-01	ci left: 1.488553e-04	ci right 1.713322e-04	k: 791	n:4950000
NCOA6   4950000 perm   11479 sec   (431 perm/sec)   p_kst 1.597980e-04   p_cons 8.305994e-01   p_joint 4.820202e-04

Joint ci ratio: 8.014779e-02	ci left: 4.627327e-04	ci right 5.015639e-04	k: 2390	n:4960000
Cons ci ratio: 7.948694e-04	ci left: 8.302763e-01	ci right 8.309367e-01	k: 4119809	n:4960000
KS ci ratio: 1.391921e-01	ci left: 1.487498e-04	ci right 1.711954e-04	k: 792	n:4960000
NCOA6   4960000 perm   11520 sec   (431 perm/sec)   p_kst 1.596774e-04   p_cons 8.306067e-01   p_joint 4.818548e-04

Joint ci ratio: 8.008084e-02	ci left: 4.625904e-04	ci right 5.013757e-04	k: 2394	n:4970000
Cons ci ratio: 7.940625e-04	ci left: 8.302790e-01	ci right 8.309387e-01	k: 4128127	n:4970000
KS ci ratio: 1.390169e-01	ci left: 1.488389e-04	ci right 1.712673e-04	k: 794	n:4970000
NCOA6   4970000 perm   11565 sec   (430 perm/sec)   p_kst 1.597586e-04   p_cons 8.306091e-01   p_joint 4.816901e-04

Joint ci ratio: 7.996405e-02	ci left: 4.630390e-04	ci right 5.018027e-04	k: 2401	n:4980000
Cons ci ratio: 7.932632e-04	ci left: 8.302799e-01	ci right 8.309390e-01	k: 4136436	n:4980000
KS ci ratio: 1.388424e-01	ci left: 1.489277e-04	ci right 1.713390e-04	k: 796	n:4980000
NCOA6   4980000 perm   11609 sec   (429 perm/sec)   p_kst 1.598394e-04   p_cons 8.306096e-01   p_joint 4.821285e-04

Joint ci ratio: 7.988095e-02	ci left: 4.630930e-04	ci right 5.018191e-04	k: 2406	n:4990000
Cons ci ratio: 7.924681e-04	ci left: 8.302802e-01	ci right 8.309386e-01	k: 4144742	n:4990000
KS ci ratio: 1.387554e-01	ci left: 1.488226e-04	ci right 1.712030e-04	k: 797	n:4990000
NCOA6   4990000 perm   11652 sec   (428 perm/sec)   p_kst 1.597194e-04   p_cons 8.306096e-01   p_joint 4.821643e-04

Joint ci ratio: 8.785633e-02	ci left: 3.805113e-04	ci right 4.156715e-04	k: 1989	n:5000000
Cons ci ratio: 7.916392e-04	ci left: 8.302933e-01	ci right 8.309511e-01	k: 4153112	n:5000000
KS ci ratio: 1.386685e-01	ci left: 1.487181e-04	ci right 1.710675e-04	k: 798	n:5000000
NCOA6   5000000 perm   11698 sec   (427 perm/sec)   p_kst 1.596000e-04   p_cons 8.306224e-01   p_joint 3.978000e-04

Outputting figure to mutsig2_images.part000000000112/NCOA6.16_6244_5000000_0.0001596_0.83062_0.0003978.png
                gene_name: NCOA6
               theta_stop: 0.14 
                    nperm: 5000000 
                     p_ks: 0.00016 
        ci_ks_bounds_left: 0.00015 
       ci_ks_bounds_right: 0.00017 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.00040 
     ci_joint_bounds_left: 0.00038 
    ci_joint_bounds_right: 0.00042 

Current progress: 12 percent done.
NCOR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.634289e-02	ci left: 5.278683e-01	ci right 5.475097e-01	k: 5377	n:10000
Cons ci ratio: 1.014468e-02	ci left: 9.323699e-01	ci right 9.419735e-01	k: 9373	n:10000
KS ci ratio: 5.214247e-02	ci left: 3.515781e-01	ci right 3.705029e-01	k: 3610	n:10000
NCOR1   10000 perm   3 sec   (3574 perm/sec)   p_kst 3.610000e-01   p_cons 9.373000e-01   p_joint 5.377000e-01

Outputting figure to mutsig2_images.part000000000112/NCOR1.12_7503_10000_0.361_0.9373_0.5377.png
                gene_name: NCOR1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 14 percent done.
NCKAP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.414471e-02	ci left: 3.344873e-01	ci right 3.532038e-01	k: 3438	n:10000
Cons ci ratio: 7.709916e-02	ci left: 1.974200e-01	ci right 2.133520e-01	k: 2053	n:10000
KS ci ratio: 5.005077e-02	ci left: 3.705722e-01	ci right 3.896977e-01	k: 3801	n:10000
NCKAP1L   10000 perm   2 sec   (5046 perm/sec)   p_kst 3.801000e-01   p_cons 2.053000e-01   p_joint 3.438000e-01

Outputting figure to mutsig2_images.part000000000112/NCKAP1L.11_3508_10000_0.3801_0.2053_0.3438.png
                gene_name: NCKAP1L
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 16 percent done.
NCOA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.417103e-02	ci left: 4.307383e-01	ci right 4.502963e-01	k: 4405	n:10000
Cons ci ratio: 1.087408e-01	ci left: 1.087125e-01	ci right 1.213128e-01	k: 1149	n:10000
KS ci ratio: 2.312049e-02	ci left: 7.332037e-01	ci right 7.504552e-01	k: 7419	n:10000
NCOA3   10000 perm   2 sec   (4648 perm/sec)   p_kst 7.419000e-01   p_cons 1.149000e-01   p_joint 4.405000e-01

Joint ci ratio: 3.907100e-02	ci left: 3.282093e-01	ci right 3.413388e-01	k: 6695	n:20000
Cons ci ratio: 7.791074e-02	ci left: 1.079558e-01	ci right 1.167573e-01	k: 2246	n:20000
KS ci ratio: 1.658581e-02	ci left: 7.301845e-01	ci right 7.424468e-01	k: 14727	n:20000
NCOA3   20000 perm   5 sec   (4197 perm/sec)   p_kst 7.363500e-01   p_cons 1.123000e-01   p_joint 3.347500e-01

Outputting figure to mutsig2_images.part000000000112/NCOA3.11_4389_20000_0.73635_0.1123_0.33475.png
                gene_name: NCOA3
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 18 percent done.
NBEAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.698429e-02	ci left: 2.464796e-01	ci right 2.636633e-01	k: 2550	n:10000
Cons ci ratio: 6.541742e-02	ci left: 2.554791e-01	ci right 2.728584e-01	k: 2641	n:10000
KS ci ratio: 5.061829e-02	ci left: 3.653000e-01	ci right 3.843730e-01	k: 3748	n:10000
NBEAL2   10000 perm   3 sec   (3556 perm/sec)   p_kst 3.748000e-01   p_cons 2.641000e-01   p_joint 2.550000e-01

Outputting figure to mutsig2_images.part000000000112/NBEAL2.10_8481_10000_0.3748_0.2641_0.255.png
                gene_name: NBEAL2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 20 percent done.
NCKAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.350161e-02	ci left: 8.878013e-01	ci right 8.999681e-01	k: 8940	n:10000
Cons ci ratio: 3.373175e-02	ci left: 5.647390e-01	ci right 5.842175e-01	k: 5745	n:10000
KS ci ratio: 2.749650e-02	ci left: 6.608869e-01	ci right 6.794139e-01	k: 6702	n:10000
NCKAP1   10000 perm   2 sec   (4615 perm/sec)   p_kst 6.702000e-01   p_cons 5.745000e-01   p_joint 8.940000e-01

Outputting figure to mutsig2_images.part000000000112/NCKAP1.9_3533_10000_0.6702_0.5745_0.894.png
                gene_name: NCKAP1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 22 percent done.
NAP1L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.760919e-02	ci left: 1.594429e-01	ci right 1.741517e-01	k: 1667	n:10000
Cons ci ratio: 2.649463e-02	ci left: 6.772033e-01	ci right 6.954880e-01	k: 6864	n:10000
KS ci ratio: 1.476979e-01	ci left: 6.092108e-02	ci right 7.073370e-02	k: 657	n:10000
NAP1L3   10000 perm   2 sec   (5375 perm/sec)   p_kst 6.570000e-02   p_cons 6.864000e-01   p_joint 1.667000e-01

Joint ci ratio: 7.087729e-02	ci left: 1.279285e-01	ci right 1.373786e-01	k: 2652	n:20000
Cons ci ratio: 1.903600e-02	ci left: 6.729817e-01	ci right 6.859661e-01	k: 13590	n:20000
KS ci ratio: 1.059567e-01	ci left: 6.064653e-02	ci right 6.748089e-02	k: 1280	n:20000
NAP1L3   20000 perm   4 sec   (4851 perm/sec)   p_kst 6.400000e-02   p_cons 6.795000e-01   p_joint 1.326000e-01

Joint ci ratio: 6.258853e-02	ci left: 1.120025e-01	ci right 1.192721e-01	k: 3468	n:30000
Cons ci ratio: 1.518729e-02	ci left: 6.842293e-01	ci right 6.947339e-01	k: 20685	n:30000
KS ci ratio: 8.693766e-02	ci left: 6.070091e-02	ci right 6.625067e-02	k: 1903	n:30000
NAP1L3   30000 perm   6 sec   (4665 perm/sec)   p_kst 6.343333e-02   p_cons 6.895000e-01   p_joint 1.156000e-01

Outputting figure to mutsig2_images.part000000000112/NAP1L3.8_1525_30000_0.063433_0.6895_0.1156.png
                gene_name: NAP1L3
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 24 percent done.
NAV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.186508e-02	ci left: 2.209917e-01	ci right 2.375663e-01	k: 2292	n:10000
Cons ci ratio: 9.251487e-02	ci left: 1.451135e-01	ci right 1.592898e-01	k: 1521	n:10000
KS ci ratio: 5.357377e-02	ci left: 3.392554e-01	ci right 3.580328e-01	k: 3486	n:10000
NAV1   10000 perm   2 sec   (4437 perm/sec)   p_kst 3.486000e-01   p_cons 1.521000e-01   p_joint 2.292000e-01

Outputting figure to mutsig2_images.part000000000112/NAV1.8_5811_10000_0.3486_0.1521_0.2292.png
                gene_name: NAV1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 25 percent done.
NBEAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.435388e-01	ci left: 6.439839e-02	ci right 7.445420e-02	k: 693	n:10000
Cons ci ratio: 2.570989e-02	ci left: 6.901044e-01	ci right 7.081794e-01	k: 6992	n:10000
KS ci ratio: 2.061291e-01	ci left: 3.129396e-02	ci right 3.858023e-02	k: 348	n:10000
NBEAL1   10000 perm   3 sec   (3253 perm/sec)   p_kst 3.480000e-02   p_cons 6.992000e-01   p_joint 6.930000e-02

Joint ci ratio: 1.096138e-01	ci left: 5.679652e-02	ci right 6.343209e-02	k: 1201	n:20000
Cons ci ratio: 1.819959e-02	ci left: 6.923379e-01	ci right 7.051043e-01	k: 13975	n:20000
KS ci ratio: 1.433295e-01	ci left: 3.346084e-02	ci right 3.867516e-02	k: 720	n:20000
NBEAL1   20000 perm   6 sec   (3230 perm/sec)   p_kst 3.600000e-02   p_cons 6.987500e-01   p_joint 6.005000e-02

Joint ci ratio: 9.608113e-02	ci left: 5.003553e-02	ci right 5.511823e-02	k: 1576	n:30000
Cons ci ratio: 1.494303e-02	ci left: 6.911613e-01	ci right 7.016006e-01	k: 20892	n:30000
KS ci ratio: 1.183696e-01	ci left: 3.317548e-02	ci right 3.738181e-02	k: 1057	n:30000
NBEAL1   30000 perm   10 sec   (3120 perm/sec)   p_kst 3.523333e-02   p_cons 6.964000e-01   p_joint 5.253333e-02

Joint ci ratio: 7.337501e-02	ci left: 6.415108e-02	ci right 6.906206e-02	k: 2663	n:40000
Cons ci ratio: 1.299009e-02	ci left: 6.902607e-01	ci right 6.993110e-01	k: 27792	n:40000
KS ci ratio: 1.039196e-01	ci left: 3.256219e-02	ci right 3.615582e-02	k: 1373	n:40000
NBEAL1   40000 perm   13 sec   (3127 perm/sec)   p_kst 3.432500e-02   p_cons 6.948000e-01   p_joint 6.657500e-02

Joint ci ratio: 6.323072e-02	ci left: 6.911854e-02	ci right 7.365137e-02	k: 3568	n:50000
Cons ci ratio: 1.158422e-02	ci left: 6.920071e-01	ci right 7.000902e-01	k: 34803	n:50000
KS ci ratio: 9.243444e-02	ci left: 3.311286e-02	ci right 3.634145e-02	k: 1735	n:50000
NBEAL1   50000 perm   16 sec   (3117 perm/sec)   p_kst 3.470000e-02   p_cons 6.960600e-01   p_joint 7.136000e-02

Outputting figure to mutsig2_images.part000000000112/NBEAL1.8_8301_50000_0.0347_0.69606_0.07136.png
                gene_name: NBEAL1
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.074 

Current progress: 27 percent done.
NCAPG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.213870e-02	ci left: 1.778256e-01	ci right 1.931581e-01	k: 1854	n:10000
Cons ci ratio: 3.349092e-02	ci left: 5.682486e-01	ci right 5.877059e-01	k: 5780	n:10000
KS ci ratio: 1.089014e-01	ci left: 1.084196e-01	ci right 1.210058e-01	k: 1146	n:10000
NCAPG   10000 perm   2 sec   (4937 perm/sec)   p_kst 1.146000e-01   p_cons 5.780000e-01   p_joint 1.854000e-01

Joint ci ratio: 5.667008e-02	ci left: 1.875504e-01	ci right 1.985390e-01	k: 3860	n:20000
Cons ci ratio: 2.369519e-02	ci left: 5.708689e-01	ci right 5.846085e-01	k: 11555	n:20000
KS ci ratio: 7.638710e-02	ci left: 1.118880e-01	ci right 1.208239e-01	k: 2326	n:20000
NCAPG   20000 perm   5 sec   (4389 perm/sec)   p_kst 1.163000e-01   p_cons 5.777500e-01   p_joint 1.930000e-01

Outputting figure to mutsig2_images.part000000000112/NCAPG.8_3132_20000_0.1163_0.57775_0.193.png
                gene_name: NCAPG
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 29 percent done.
NCOA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.778521e-02	ci left: 5.084526e-01	ci right 5.281367e-01	k: 5183	n:10000
Cons ci ratio: 2.373042e-02	ci left: 7.230002e-01	ci right 7.404646e-01	k: 7318	n:10000
KS ci ratio: 4.827181e-02	ci left: 3.876902e-01	ci right 4.069696e-01	k: 3973	n:10000
NCOA1   10000 perm   2 sec   (4627 perm/sec)   p_kst 3.973000e-01   p_cons 7.318000e-01   p_joint 5.183000e-01

Outputting figure to mutsig2_images.part000000000112/NCOA1.8_4451_10000_0.3973_0.7318_0.5183.png
                gene_name: NCOA1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 31 percent done.
NBAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.552890e-01	ci left: 5.523135e-02	ci right 6.462705e-02	k: 598	n:10000
Cons ci ratio: 1.931253e-02	ci left: 7.967918e-01	ci right 8.124303e-01	k: 8047	n:10000
KS ci ratio: 2.989652e-01	ci left: 1.437251e-02	ci right 1.951444e-02	k: 168	n:10000
NBAS   10000 perm   3 sec   (3957 perm/sec)   p_kst 1.680000e-02   p_cons 8.047000e-01   p_joint 5.980000e-02

Joint ci ratio: 1.203770e-01	ci left: 4.731148e-02	ci right 5.342009e-02	k: 1006	n:20000
Cons ci ratio: 1.391582e-02	ci left: 7.930747e-01	ci right 8.042384e-01	k: 15974	n:20000
KS ci ratio: 2.212663e-01	ci left: 1.373916e-02	ci right 1.720379e-02	k: 308	n:20000
NBAS   20000 perm   6 sec   (3434 perm/sec)   p_kst 1.540000e-02   p_cons 7.987000e-01   p_joint 5.030000e-02

Joint ci ratio: 1.079538e-01	ci left: 3.982288e-02	ci right 4.439966e-02	k: 1262	n:30000
Cons ci ratio: 1.139983e-02	ci left: 7.930416e-01	ci right 8.021673e-01	k: 23929	n:30000
KS ci ratio: 1.838116e-01	ci left: 1.355952e-02	ci right 1.633558e-02	k: 447	n:30000
NBAS   30000 perm   9 sec   (3317 perm/sec)   p_kst 1.490000e-02   p_cons 7.976333e-01   p_joint 4.206667e-02

Joint ci ratio: 9.841413e-02	ci left: 3.626945e-02	ci right 4.004798e-02	k: 1525	n:40000
Cons ci ratio: 9.844474e-03	ci left: 7.945853e-01	ci right 8.024713e-01	k: 31942	n:40000
KS ci ratio: 1.597755e-01	ci left: 1.363948e-02	ci right 1.603171e-02	k: 592	n:40000
NBAS   40000 perm   12 sec   (3273 perm/sec)   p_kst 1.480000e-02   p_cons 7.985500e-01   p_joint 3.812500e-02

Joint ci ratio: 9.318781e-02	ci left: 3.258498e-02	ci right 3.578940e-02	k: 1708	n:50000
Cons ci ratio: 8.805423e-03	ci left: 7.949971e-01	ci right 8.020482e-01	k: 39927	n:50000
KS ci ratio: 1.425423e-01	ci left: 1.383701e-02	ci right 1.597985e-02	k: 744	n:50000
NBAS   50000 perm   16 sec   (3213 perm/sec)   p_kst 1.488000e-02   p_cons 7.985400e-01   p_joint 3.416000e-02

Joint ci ratio: 8.224120e-02	ci left: 3.498092e-02	ci right 3.799746e-02	k: 2188	n:60000
Cons ci ratio: 7.899902e-03	ci left: 8.008677e-01	ci right 8.072362e-01	k: 48244	n:60000
KS ci ratio: 1.304195e-01	ci left: 1.386512e-02	ci right 1.581555e-02	k: 889	n:60000
NBAS   60000 perm   19 sec   (3178 perm/sec)   p_kst 1.481667e-02   p_cons 8.040667e-01   p_joint 3.646667e-02

Joint ci ratio: 7.569317e-02	ci left: 3.550153e-02	ci right 3.830845e-02	k: 2582	n:70000
Cons ci ratio: 7.316754e-03	ci left: 8.009821e-01	ci right 8.068784e-01	k: 56276	n:70000
KS ci ratio: 1.205880e-01	ci left: 1.397393e-02	ci right 1.578090e-02	k: 1040	n:70000
NBAS   70000 perm   22 sec   (3147 perm/sec)   p_kst 1.485714e-02   p_cons 8.039429e-01   p_joint 3.688571e-02

Joint ci ratio: 7.130767e-02	ci left: 3.510052e-02	ci right 3.770824e-02	k: 2911	n:80000
Cons ci ratio: 6.838608e-03	ci left: 8.014330e-01	ci right 8.069449e-01	k: 64336	n:80000
KS ci ratio: 1.117890e-01	ci left: 1.429062e-02	ci right 1.599481e-02	k: 1210	n:80000
NBAS   80000 perm   26 sec   (3115 perm/sec)   p_kst 1.512500e-02   p_cons 8.042000e-01   p_joint 3.638750e-02

Joint ci ratio: 6.754041e-02	ci left: 3.485793e-02	ci right 3.730543e-02	k: 3246	n:90000
Cons ci ratio: 6.455686e-03	ci left: 8.011902e-01	ci right 8.063902e-01	k: 72342	n:90000
KS ci ratio: 1.060048e-01	ci left: 1.417269e-02	ci right 1.576990e-02	k: 1346	n:90000
NBAS   90000 perm   29 sec   (3073 perm/sec)   p_kst 1.495556e-02   p_cons 8.038000e-01   p_joint 3.606667e-02

Joint ci ratio: 6.445333e-02	ci left: 3.451913e-02	ci right 3.682790e-02	k: 3566	n:100000
Cons ci ratio: 6.111969e-03	ci left: 8.019679e-01	ci right 8.068944e-01	k: 80444	n:100000
KS ci ratio: 1.015218e-01	ci left: 1.394368e-02	ci right 1.544466e-02	k: 1468	n:100000
NBAS   100000 perm   33 sec   (3034 perm/sec)   p_kst 1.468000e-02   p_cons 8.044400e-01   p_joint 3.566000e-02

Joint ci ratio: 6.228751e-02	ci left: 3.367095e-02	ci right 3.584457e-02	k: 3822	n:110000
Cons ci ratio: 5.821537e-03	ci left: 8.024086e-01	ci right 8.071026e-01	k: 88524	n:110000
KS ci ratio: 9.700774e-02	ci left: 1.391720e-02	ci right 1.534492e-02	k: 1608	n:110000
NBAS   110000 perm   37 sec   (2996 perm/sec)   p_kst 1.461818e-02   p_cons 8.047636e-01   p_joint 3.474545e-02

Outputting figure to mutsig2_images.part000000000112/NBAS.7_7324_110000_0.014618_0.80476_0.034745.png
                gene_name: NBAS
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.036 

Current progress: 33 percent done.
NCAN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.398202e-02	ci left: 2.110256e-01	ci right 2.273383e-01	k: 2191	n:10000
Cons ci ratio: 1.074776e-01	ci left: 1.110554e-01	ci right 1.237684e-01	k: 1173	n:10000
KS ci ratio: 6.111290e-02	ci left: 2.825056e-01	ci right 3.004161e-01	k: 2914	n:10000
NCAN   10000 perm   2 sec   (4867 perm/sec)   p_kst 2.914000e-01   p_cons 1.173000e-01   p_joint 2.191000e-01

Joint ci ratio: 6.206165e-02	ci left: 1.611140e-01	ci right 1.714832e-01	k: 3325	n:20000
Cons ci ratio: 7.642427e-02	ci left: 1.117897e-01	ci right 1.207222e-01	k: 2324	n:20000
KS ci ratio: 4.320308e-02	ci left: 2.852571e-01	ci right 2.979036e-01	k: 5831	n:20000
NCAN   20000 perm   5 sec   (4384 perm/sec)   p_kst 2.915500e-01   p_cons 1.162000e-01   p_joint 1.662500e-01

Outputting figure to mutsig2_images.part000000000112/NCAN.7_4022_20000_0.29155_0.1162_0.16625.png
                gene_name: NCAN
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 35 percent done.
NCOA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.939054e-02	ci left: 4.876522e-01	ci right 5.073492e-01	k: 4975	n:10000
Cons ci ratio: 3.581263e-02	ci left: 5.351780e-01	ci right 5.547957e-01	k: 5450	n:10000
KS ci ratio: 5.617279e-02	ci left: 3.182039e-01	ci right 3.366967e-01	k: 3274	n:10000
NCOA2   10000 perm   2 sec   (4704 perm/sec)   p_kst 3.274000e-01   p_cons 5.450000e-01   p_joint 4.975000e-01

Outputting figure to mutsig2_images.part000000000112/NCOA2.7_4479_10000_0.3274_0.545_0.4975.png
                gene_name: NCOA2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 37 percent done.
NDEL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.030513e-01	ci left: 1.198488e-01	ci right 1.329697e-01	k: 1263	n:10000
Cons ci ratio: 2.322340e-01	ci left: 2.447729e-02	ci right 3.100172e-02	k: 276	n:10000
KS ci ratio: 8.951618e-02	ci left: 1.536497e-01	ci right 1.681484e-01	k: 1608	n:10000
NDEL1   10000 perm   2 sec   (5876 perm/sec)   p_kst 1.608000e-01   p_cons 2.760000e-02   p_joint 1.263000e-01

Joint ci ratio: 8.062448e-02	ci left: 1.014224e-01	ci right 1.099926e-01	k: 2113	n:20000
Cons ci ratio: 1.678361e-01	ci left: 2.431805e-02	ci right 2.882102e-02	k: 530	n:20000
KS ci ratio: 6.461960e-02	ci left: 1.503551e-01	ci right 1.604453e-01	k: 3107	n:20000
NDEL1   20000 perm   4 sec   (5225 perm/sec)   p_kst 1.553500e-01   p_cons 2.650000e-02   p_joint 1.056500e-01

Joint ci ratio: 8.244977e-02	ci left: 6.717056e-02	ci right 7.297970e-02	k: 2101	n:30000
Cons ci ratio: 1.368183e-01	ci left: 2.480844e-02	ci right 2.848400e-02	k: 798	n:30000
KS ci ratio: 5.224544e-02	ci left: 1.538563e-01	ci right 1.621434e-01	k: 4739	n:30000
NDEL1   30000 perm   6 sec   (4966 perm/sec)   p_kst 1.579667e-01   p_cons 2.660000e-02   p_joint 7.003333e-02

Joint ci ratio: 7.404728e-02	ci left: 6.304544e-02	ci right 6.791788e-02	k: 2618	n:40000
Cons ci ratio: 1.190253e-01	ci left: 2.482656e-02	ci right 2.799270e-02	k: 1055	n:40000
KS ci ratio: 4.524600e-02	ci left: 1.544133e-01	ci right 1.615865e-01	k: 6319	n:40000
NDEL1   40000 perm   8 sec   (4807 perm/sec)   p_kst 1.579750e-01   p_cons 2.637500e-02   p_joint 6.545000e-02

Joint ci ratio: 6.538715e-02	ci left: 6.486308e-02	ci right 6.926735e-02	k: 3352	n:50000
Cons ci ratio: 1.074249e-01	ci left: 2.454481e-02	ci right 2.735059e-02	k: 1296	n:50000
KS ci ratio: 4.056082e-02	ci left: 1.541980e-01	ci right 1.606018e-01	k: 7869	n:50000
NDEL1   50000 perm   11 sec   (4680 perm/sec)   p_kst 1.573800e-01   p_cons 2.592000e-02   p_joint 6.704000e-02

Joint ci ratio: 5.889082e-02	ci left: 6.673795e-02	ci right 7.080388e-02	k: 4125	n:60000
Cons ci ratio: 9.837059e-02	ci left: 2.451356e-02	ci right 2.706592e-02	k: 1546	n:60000
KS ci ratio: 3.704312e-02	ci left: 1.543620e-01	ci right 1.602045e-01	k: 9436	n:60000
NDEL1   60000 perm   13 sec   (4575 perm/sec)   p_kst 1.572667e-01   p_cons 2.576667e-02   p_joint 6.875000e-02

Outputting figure to mutsig2_images.part000000000112/NDEL1.7_1109_60000_0.15727_0.025767_0.06875.png
                gene_name: NDEL1
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.071 

Current progress: 39 percent done.
NARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.187220e-01	ci left: 1.252543e-02	ci right 1.736316e-02	k: 148	n:10000
Cons ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
KS ci ratio: 2.251712e-02	ci left: 7.433121e-01	ci right 7.603410e-01	k: 7519	n:10000
NARS2   10000 perm   2 sec   (5899 perm/sec)   p_kst 7.519000e-01   p_cons 2.100000e-03   p_joint 1.480000e-02

Joint ci ratio: 2.209035e-01	ci left: 1.378643e-02	ci right 1.725651e-02	k: 309	n:20000
Cons ci ratio: 5.651098e-01	ci left: 1.727187e-03	ci right 3.123791e-03	k: 47	n:20000
KS ci ratio: 1.597547e-02	ci left: 7.445929e-01	ci right 7.566342e-01	k: 15013	n:20000
NARS2   20000 perm   4 sec   (5196 perm/sec)   p_kst 7.506500e-01   p_cons 2.350000e-03   p_joint 1.545000e-02

Joint ci ratio: 2.176158e-01	ci left: 9.535129e-03	ci right 1.189440e-02	k: 320	n:30000
Cons ci ratio: 4.646599e-01	ci left: 1.819386e-03	ci right 2.947120e-03	k: 70	n:30000
KS ci ratio: 1.300737e-02	ci left: 7.467704e-01	ci right 7.565809e-01	k: 22551	n:30000
NARS2   30000 perm   6 sec   (4937 perm/sec)   p_kst 7.517000e-01   p_cons 2.333333e-03   p_joint 1.066667e-02

Joint ci ratio: 1.493757e-01	ci left: 1.565950e-02	ci right 1.821133e-02	k: 676	n:40000
Cons ci ratio: 4.038368e-01	ci left: 1.876973e-03	ci right 2.847537e-03	k: 93	n:40000
KS ci ratio: 1.178239e-02	ci left: 7.301932e-01	ci right 7.388727e-01	k: 29382	n:40000
NARS2   40000 perm   8 sec   (4768 perm/sec)   p_kst 7.345500e-01   p_cons 2.325000e-03   p_joint 1.690000e-02

Joint ci ratio: 1.230916e-01	ci left: 1.865502e-02	ci right 2.112117e-02	k: 993	n:50000
Cons ci ratio: 3.473983e-01	ci left: 2.099648e-03	ci right 2.999660e-03	k: 126	n:50000
KS ci ratio: 1.050636e-02	ci left: 7.318515e-01	ci right 7.396012e-01	k: 36787	n:50000
NARS2   50000 perm   11 sec   (4611 perm/sec)   p_kst 7.357400e-01   p_cons 2.520000e-03   p_joint 1.986000e-02

Joint ci ratio: 9.478355e-02	ci left: 2.640141e-02	ci right 2.904454e-02	k: 1662	n:60000
Cons ci ratio: 3.056794e-01	ci left: 2.316063e-03	ci right 3.166505e-03	k: 163	n:60000
KS ci ratio: 9.686515e-03	ci left: 7.283026e-01	ci right 7.354083e-01	k: 43912	n:60000
NARS2   60000 perm   13 sec   (4514 perm/sec)   p_kst 7.318667e-01   p_cons 2.716667e-03   p_joint 2.770000e-02

Joint ci ratio: 1.050215e-01	ci left: 1.848848e-02	ci right 2.055162e-02	k: 1365	n:70000
Cons ci ratio: 3.048095e-01	ci left: 1.998336e-03	ci right 2.729608e-03	k: 164	n:70000
KS ci ratio: 8.986802e-03	ci left: 7.277414e-01	ci right 7.343252e-01	k: 51173	n:70000
NARS2   70000 perm   16 sec   (4424 perm/sec)   p_kst 7.310429e-01   p_cons 2.342857e-03   p_joint 1.950000e-02

Joint ci ratio: 1.073728e-01	ci left: 1.550688e-02	ci right 1.727845e-02	k: 1310	n:80000
Cons ci ratio: 2.902372e-01	ci left: 1.945183e-03	ci right 2.616728e-03	k: 181	n:80000
KS ci ratio: 8.407304e-03	ci left: 7.279126e-01	ci right 7.340707e-01	k: 58480	n:80000
NARS2   80000 perm   18 sec   (4341 perm/sec)   p_kst 7.310000e-01   p_cons 2.262500e-03   p_joint 1.637500e-02

Joint ci ratio: 8.866678e-02	ci left: 2.031227e-02	ci right 2.220766e-02	k: 1912	n:90000
Cons ci ratio: 2.714873e-01	ci left: 1.997622e-03	ci right 2.635134e-03	k: 207	n:90000
KS ci ratio: 7.911707e-03	ci left: 7.288258e-01	ci right 7.346260e-01	k: 65856	n:90000
NARS2   90000 perm   21 sec   (4236 perm/sec)   p_kst 7.317333e-01   p_cons 2.300000e-03   p_joint 2.124444e-02

Joint ci ratio: 7.950970e-02	ci left: 2.278566e-02	ci right 2.468211e-02	k: 2372	n:100000
Cons ci ratio: 2.527298e-01	ci left: 2.096874e-03	ci right 2.712556e-03	k: 239	n:100000
KS ci ratio: 7.505962e-03	ci left: 7.289622e-01	ci right 7.344643e-01	k: 73172	n:100000
NARS2   100000 perm   24 sec   (4156 perm/sec)   p_kst 7.317200e-01   p_cons 2.390000e-03   p_joint 2.372000e-02

Joint ci ratio: 7.944369e-02	ci left: 2.079357e-02	ci right 2.252269e-02	k: 2381	n:110000
Cons ci ratio: 2.400588e-01	ci left: 2.128031e-03	ci right 2.716876e-03	k: 265	n:110000
KS ci ratio: 7.165306e-03	ci left: 7.286151e-01	ci right 7.338636e-01	k: 80437	n:110000
NARS2   110000 perm   27 sec   (4087 perm/sec)   p_kst 7.312455e-01   p_cons 2.409091e-03   p_joint 2.164545e-02

Joint ci ratio: 7.413839e-02	ci left: 2.192194e-02	ci right 2.361790e-02	k: 2731	n:120000
Cons ci ratio: 2.279496e-01	ci left: 2.178209e-03	ci right 2.746262e-03	k: 294	n:120000
KS ci ratio: 6.861345e-03	ci left: 7.286652e-01	ci right 7.336903e-01	k: 87742	n:120000
NARS2   120000 perm   30 sec   (3969 perm/sec)   p_kst 7.311833e-01   p_cons 2.450000e-03   p_joint 2.275833e-02

Joint ci ratio: 6.697193e-02	ci left: 2.481630e-02	ci right 2.654341e-02	k: 3337	n:130000
Cons ci ratio: 2.209502e-01	ci left: 2.148589e-03	ci right 2.689373e-03	k: 313	n:130000
KS ci ratio: 6.583117e-03	ci left: 7.293056e-01	ci right 7.341302e-01	k: 95124	n:130000
NARS2   130000 perm   33 sec   (3911 perm/sec)   p_kst 7.317231e-01   p_cons 2.407692e-03   p_joint 2.566923e-02

Joint ci ratio: 6.592064e-02	ci left: 2.382298e-02	ci right 2.545393e-02	k: 3448	n:140000
Cons ci ratio: 2.161913e-01	ci left: 2.089637e-03	ci right 2.602751e-03	k: 327	n:140000
KS ci ratio: 6.345640e-03	ci left: 7.292705e-01	ci right 7.339200e-01	k: 102424	n:140000
NARS2   140000 perm   36 sec   (3858 perm/sec)   p_kst 7.316000e-01   p_cons 2.335714e-03   p_joint 2.462857e-02

Joint ci ratio: 7.352002e-02	ci left: 1.791571e-02	ci right 1.928965e-02	k: 2789	n:150000
Cons ci ratio: 2.098895e-01	ci left: 2.076547e-03	ci right 2.569673e-03	k: 347	n:150000
KS ci ratio: 6.522965e-03	ci left: 7.042284e-01	ci right 7.088437e-01	k: 105981	n:150000
NARS2   150000 perm   39 sec   (3802 perm/sec)   p_kst 7.065400e-01   p_cons 2.313333e-03   p_joint 1.859333e-02

Joint ci ratio: 7.394208e-02	ci left: 1.662379e-02	ci right 1.790628e-02	k: 2761	n:160000
Cons ci ratio: 2.016517e-01	ci left: 2.118681e-03	ci right 2.599636e-03	k: 376	n:160000
KS ci ratio: 6.309877e-03	ci left: 7.046941e-01	ci right 7.091609e-01	k: 113109	n:160000
NARS2   160000 perm   43 sec   (3748 perm/sec)   p_kst 7.069313e-01   p_cons 2.350000e-03   p_joint 1.725625e-02

Joint ci ratio: 7.246171e-02	ci left: 1.630991e-02	ci right 1.754193e-02	k: 2876	n:170000
Cons ci ratio: 1.950369e-01	ci left: 2.139402e-03	ci right 2.607239e-03	k: 402	n:170000
KS ci ratio: 6.116468e-03	ci left: 7.051012e-01	ci right 7.094329e-01	k: 120236	n:170000
NARS2   170000 perm   46 sec   (3695 perm/sec)   p_kst 7.072706e-01   p_cons 2.364706e-03   p_joint 1.691765e-02

Joint ci ratio: 6.785111e-02	ci left: 1.758746e-02	ci right 1.882813e-02	k: 3276	n:180000
Cons ci ratio: 1.912810e-01	ci left: 2.105133e-03	ci right 2.555579e-03	k: 418	n:180000
KS ci ratio: 5.948503e-03	ci left: 7.048579e-01	ci right 7.090688e-01	k: 127254	n:180000
NARS2   180000 perm   49 sec   (3642 perm/sec)   p_kst 7.069667e-01   p_cons 2.322222e-03   p_joint 1.820000e-02

Joint ci ratio: 6.932988e-02	ci left: 1.597334e-02	ci right 1.712569e-02	k: 3143	n:190000
Cons ci ratio: 1.853989e-01	ci left: 2.129745e-03	ci right 2.569869e-03	k: 445	n:190000
KS ci ratio: 5.792324e-03	ci left: 7.047368e-01	ci right 7.088359e-01	k: 134290	n:190000
NARS2   190000 perm   53 sec   (3593 perm/sec)   p_kst 7.067895e-01   p_cons 2.342105e-03   p_joint 1.654211e-02

Joint ci ratio: 6.851159e-02	ci left: 1.555293e-02	ci right 1.666116e-02	k: 3220	n:200000
Cons ci ratio: 1.823616e-01	ci left: 2.094802e-03	ci right 2.519829e-03	k: 460	n:200000
KS ci ratio: 5.646130e-03	ci left: 7.047543e-01	ci right 7.087497e-01	k: 141351	n:200000
NARS2   200000 perm   56 sec   (3545 perm/sec)   p_kst 7.067550e-01   p_cons 2.300000e-03   p_joint 1.610000e-02

Joint ci ratio: 6.366415e-02	ci left: 1.716845e-02	ci right 1.830206e-02	k: 3723	n:210000
Cons ci ratio: 1.783457e-01	ci left: 2.090535e-03	ci right 2.504347e-03	k: 481	n:210000
KS ci ratio: 5.504840e-03	ci left: 7.051961e-01	ci right 7.090935e-01	k: 148501	n:210000
NARS2   210000 perm   60 sec   (3496 perm/sec)   p_kst 7.071476e-01   p_cons 2.290476e-03   p_joint 1.772857e-02

Joint ci ratio: 6.230890e-02	ci left: 1.712176e-02	ci right 1.822736e-02	k: 3887	n:220000
Cons ci ratio: 1.735494e-01	ci left: 2.112836e-03	ci right 2.518637e-03	k: 508	n:220000
KS ci ratio: 5.378186e-03	ci left: 7.052480e-01	ci right 7.090557e-01	k: 155574	n:220000
NARS2   220000 perm   64 sec   (3449 perm/sec)   p_kst 7.071545e-01   p_cons 2.309091e-03   p_joint 1.766818e-02

Joint ci ratio: 5.731804e-02	ci left: 1.935885e-02	ci right 2.050546e-02	k: 4583	n:230000
Cons ci ratio: 1.684914e-01	ci left: 2.149991e-03	ci right 2.549672e-03	k: 539	n:230000
KS ci ratio: 5.258289e-03	ci left: 7.054226e-01	ci right 7.091460e-01	k: 162676	n:230000
NARS2   230000 perm   68 sec   (3402 perm/sec)   p_kst 7.072870e-01   p_cons 2.343478e-03   p_joint 1.992609e-02

Joint ci ratio: 5.669634e-02	ci left: 1.897518e-02	ci right 2.008647e-02	k: 4686	n:240000
Cons ci ratio: 1.657535e-01	ci left: 2.132270e-03	ci right 2.521572e-03	k: 557	n:240000
KS ci ratio: 5.148502e-03	ci left: 7.053874e-01	ci right 7.090326e-01	k: 169731	n:240000
NARS2   240000 perm   71 sec   (3358 perm/sec)   p_kst 7.072125e-01   p_cons 2.320833e-03   p_joint 1.952500e-02

Joint ci ratio: 5.777037e-02	ci left: 1.756130e-02	ci right 1.860992e-02	k: 4520	n:250000
Cons ci ratio: 1.453736e-01	ci left: 2.689138e-03	ci right 3.114516e-03	k: 724	n:250000
KS ci ratio: 5.046485e-03	ci left: 7.052596e-01	ci right 7.088316e-01	k: 176762	n:250000
NARS2   250000 perm   75 sec   (3315 perm/sec)   p_kst 7.070480e-01   p_cons 2.896000e-03   p_joint 1.808000e-02

Joint ci ratio: 5.648260e-02	ci left: 1.767446e-02	ci right 1.870555e-02	k: 4728	n:260000
Cons ci ratio: 1.434115e-01	ci left: 2.659851e-03	ci right 3.074431e-03	k: 744	n:260000
KS ci ratio: 4.952873e-03	ci left: 7.049265e-01	ci right 7.084304e-01	k: 183737	n:260000
NARS2   260000 perm   79 sec   (3273 perm/sec)   p_kst 7.066808e-01   p_cons 2.861538e-03   p_joint 1.818462e-02

Joint ci ratio: 5.572151e-02	ci left: 1.749819e-02	ci right 1.850479e-02	k: 4859	n:270000
Cons ci ratio: 1.407904e-01	ci left: 2.661355e-03	ci right 3.067951e-03	k: 772	n:270000
KS ci ratio: 4.859238e-03	ci left: 7.050492e-01	ci right 7.084871e-01	k: 190828	n:270000
NARS2   270000 perm   84 sec   (3233 perm/sec)   p_kst 7.067704e-01   p_cons 2.859259e-03   p_joint 1.799630e-02

Joint ci ratio: 5.223384e-02	ci left: 1.920256e-02	ci right 2.023599e-02	k: 5520	n:280000
Cons ci ratio: 1.379629e-01	ci left: 2.676608e-03	ci right 3.076648e-03	k: 804	n:280000
KS ci ratio: 4.772076e-03	ci left: 7.050455e-01	ci right 7.084216e-01	k: 197886	n:280000
NARS2   280000 perm   88 sec   (3193 perm/sec)   p_kst 7.067357e-01   p_cons 2.871429e-03   p_joint 1.971429e-02

Joint ci ratio: 4.976815e-02	ci left: 2.042330e-02	ci right 2.146906e-02	k: 6073	n:290000
Cons ci ratio: 1.350566e-01	ci left: 2.700882e-03	ci right 3.095363e-03	k: 839	n:290000
KS ci ratio: 4.691783e-03	ci left: 7.048354e-01	ci right 7.081535e-01	k: 204884	n:290000
NARS2   290000 perm   92 sec   (3155 perm/sec)   p_kst 7.064966e-01   p_cons 2.893103e-03   p_joint 2.094138e-02

Joint ci ratio: 4.675642e-02	ci left: 2.235779e-02	ci right 2.343146e-02	k: 6867	n:300000
Cons ci ratio: 1.330144e-01	ci left: 2.694612e-03	ci right 3.081756e-03	k: 865	n:300000
KS ci ratio: 4.613330e-03	ci left: 7.048268e-01	ci right 7.080892e-01	k: 211938	n:300000
NARS2   300000 perm   96 sec   (3118 perm/sec)   p_kst 7.064600e-01   p_cons 2.883333e-03   p_joint 2.289000e-02

Joint ci ratio: 4.676016e-02	ci left: 2.164914e-02	ci right 2.268886e-02	k: 6871	n:310000
Cons ci ratio: 1.304766e-01	ci left: 2.713754e-03	ci right 3.095633e-03	k: 899	n:310000
KS ci ratio: 4.538580e-03	ci left: 7.048289e-01	ci right 7.080382e-01	k: 218995	n:310000
NARS2   310000 perm   101 sec   (3080 perm/sec)   p_kst 7.064355e-01   p_cons 2.900000e-03   p_joint 2.216452e-02

Joint ci ratio: 4.721747e-02	ci left: 2.058630e-02	ci right 2.158490e-02	k: 6746	n:320000
Cons ci ratio: 1.279415e-01	ci left: 2.737815e-03	ci right 3.115026e-03	k: 935	n:320000
KS ci ratio: 4.467350e-03	ci left: 7.048312e-01	ci right 7.079901e-01	k: 226052	n:320000
NARS2   320000 perm   105 sec   (3044 perm/sec)   p_kst 7.064125e-01   p_cons 2.921875e-03   p_joint 2.108125e-02

Joint ci ratio: 4.701989e-02	ci left: 2.014204e-02	ci right 2.111489e-02	k: 6806	n:330000
Cons ci ratio: 1.259390e-01	ci left: 2.742874e-03	ci right 3.114425e-03	k: 965	n:330000
KS ci ratio: 4.402168e-03	ci left: 7.045697e-01	ci right 7.076812e-01	k: 233022	n:330000
NARS2   330000 perm   110 sec   (3009 perm/sec)   p_kst 7.061273e-01   p_cons 2.924242e-03   p_joint 2.062424e-02

Joint ci ratio: 4.662718e-02	ci left: 1.988965e-02	ci right 2.084208e-02	k: 6923	n:340000
Cons ci ratio: 1.239030e-01	ci left: 2.753378e-03	ci right 3.119881e-03	k: 997	n:340000
KS ci ratio: 4.336064e-03	ci left: 7.046775e-01	ci right 7.077425e-01	k: 240112	n:340000
NARS2   340000 perm   114 sec   (2976 perm/sec)   p_kst 7.062118e-01   p_cons 2.932353e-03   p_joint 2.036176e-02

Joint ci ratio: 4.721824e-02	ci left: 1.885524e-02	ci right 1.976989e-02	k: 6758	n:350000
Cons ci ratio: 1.219627e-01	ci left: 2.763328e-03	ci right 3.124979e-03	k: 1029	n:350000
KS ci ratio: 4.271556e-03	ci left: 7.049053e-01	ci right 7.079256e-01	k: 247246	n:350000
NARS2   350000 perm   119 sec   (2943 perm/sec)   p_kst 7.064171e-01   p_cons 2.940000e-03   p_joint 1.930857e-02

Joint ci ratio: 4.654455e-02	ci left: 1.887229e-02	ci right 1.977435e-02	k: 6955	n:360000
Cons ci ratio: 1.201107e-01	ci left: 2.772768e-03	ci right 3.129752e-03	k: 1061	n:360000
KS ci ratio: 4.210970e-03	ci left: 7.050095e-01	ci right 7.079872e-01	k: 254340	n:360000
NARS2   360000 perm   124 sec   (2910 perm/sec)   p_kst 7.065000e-01   p_cons 2.947222e-03   p_joint 1.931944e-02

Joint ci ratio: 4.602702e-02	ci left: 1.878430e-02	ci right 1.967190e-02	k: 7113	n:370000
Cons ci ratio: 1.188868e-01	ci left: 2.755509e-03	ci right 3.106402e-03	k: 1083	n:370000
KS ci ratio: 4.153594e-03	ci left: 7.050379e-01	ci right 7.079751e-01	k: 261408	n:370000
NARS2   370000 perm   129 sec   (2878 perm/sec)   p_kst 7.065081e-01   p_cons 2.927027e-03   p_joint 1.922432e-02

Joint ci ratio: 4.549447e-02	ci left: 1.872701e-02	ci right 1.960140e-02	k: 7281	n:380000
Cons ci ratio: 1.172222e-01	ci left: 2.762166e-03	ci right 3.108641e-03	k: 1114	n:380000
KS ci ratio: 4.096941e-03	ci left: 7.052232e-01	ci right 7.081210e-01	k: 268536	n:380000
NARS2   380000 perm   133 sec   (2847 perm/sec)   p_kst 7.066737e-01   p_cons 2.931579e-03   p_joint 1.916053e-02

Joint ci ratio: 4.510667e-02	ci left: 1.856875e-02	ci right 1.942817e-02	k: 7408	n:390000
Cons ci ratio: 1.156763e-01	ci left: 2.766024e-03	ci right 3.108094e-03	k: 1144	n:390000
KS ci ratio: 4.043344e-03	ci left: 7.053171e-01	ci right 7.081772e-01	k: 275632	n:390000
NARS2   390000 perm   139 sec   (2815 perm/sec)   p_kst 7.067487e-01   p_cons 2.933333e-03   p_joint 1.899487e-02

Joint ci ratio: 4.424336e-02	ci left: 1.882148e-02	ci right 1.967550e-02	k: 7698	n:400000
Cons ci ratio: 1.138020e-01	ci left: 2.789149e-03	ci right 3.128115e-03	k: 1182	n:400000
KS ci ratio: 3.991314e-03	ci left: 7.054566e-01	ci right 7.082804e-01	k: 282748	n:400000
NARS2   400000 perm   144 sec   (2786 perm/sec)   p_kst 7.068700e-01   p_cons 2.955000e-03   p_joint 1.924500e-02

Joint ci ratio: 4.392655e-02	ci left: 1.863495e-02	ci right 1.947430e-02	k: 7811	n:410000
Cons ci ratio: 1.122931e-01	ci left: 2.796963e-03	ci right 3.132074e-03	k: 1214	n:410000
KS ci ratio: 3.939200e-03	ci left: 7.058044e-01	ci right 7.085926e-01	k: 289952	n:410000
NARS2   410000 perm   149 sec   (2757 perm/sec)   p_kst 7.072000e-01   p_cons 2.960976e-03   p_joint 1.905122e-02

Joint ci ratio: 4.864834e-02	ci left: 1.485331e-02	ci right 1.559625e-02	k: 6393	n:420000
Cons ci ratio: 1.255883e-01	ci left: 2.168911e-03	ci right 2.461832e-03	k: 971	n:420000
KS ci ratio: 3.893052e-03	ci left: 7.057115e-01	ci right 7.084666e-01	k: 296978	n:420000
NARS2   420000 perm   154 sec   (2729 perm/sec)   p_kst 7.070905e-01   p_cons 2.311905e-03   p_joint 1.522143e-02

Joint ci ratio: 5.057414e-02	ci left: 1.343046e-02	ci right 1.412960e-02	k: 5924	n:430000
Cons ci ratio: 1.245683e-01	ci left: 2.154515e-03	ci right 2.442955e-03	k: 987	n:430000
KS ci ratio: 3.846738e-03	ci left: 7.058117e-01	ci right 7.085343e-01	k: 304085	n:430000
NARS2   430000 perm   159 sec   (2701 perm/sec)   p_kst 7.071744e-01   p_cons 2.295349e-03   p_joint 1.377674e-02

Joint ci ratio: 4.880893e-02	ci left: 1.409496e-02	ci right 1.480236e-02	k: 6356	n:440000
Cons ci ratio: 1.234496e-01	ci left: 2.145188e-03	ci right 2.429611e-03	k: 1005	n:440000
KS ci ratio: 3.801850e-03	ci left: 7.059280e-01	ci right 7.086192e-01	k: 311201	n:440000
NARS2   440000 perm   165 sec   (2674 perm/sec)   p_kst 7.072750e-01   p_cons 2.284091e-03   p_joint 1.444545e-02

Joint ci ratio: 3.971046e-02	ci left: 2.077449e-02	ci right 2.161835e-02	k: 9537	n:450000
Cons ci ratio: 1.144530e-01	ci left: 2.451154e-03	ci right 2.750863e-03	k: 1169	n:450000
KS ci ratio: 3.760354e-03	ci left: 7.058346e-01	ci right 7.084960e-01	k: 318225	n:450000
NARS2   450000 perm   170 sec   (2647 perm/sec)   p_kst 7.071667e-01   p_cons 2.597778e-03   p_joint 2.119333e-02

Joint ci ratio: 3.904380e-02	ci left: 2.102464e-02	ci right 2.186401e-02	k: 9863	n:460000
Cons ci ratio: 1.135358e-01	ci left: 2.437994e-03	ci right 2.733544e-03	k: 1188	n:460000
KS ci ratio: 3.718859e-03	ci left: 7.058935e-01	ci right 7.085256e-01	k: 325317	n:460000
NARS2   460000 perm   176 sec   (2621 perm/sec)   p_kst 7.072109e-01   p_cons 2.582609e-03   p_joint 2.144130e-02

Joint ci ratio: 3.884425e-02	ci left: 2.079639e-02	ci right 2.162230e-02	k: 9967	n:470000
Cons ci ratio: 1.124072e-01	ci left: 2.435743e-03	ci right 2.727890e-03	k: 1212	n:470000
KS ci ratio: 3.679029e-03	ci left: 7.059138e-01	ci right 7.085177e-01	k: 332392	n:470000
NARS2   470000 perm   181 sec   (2596 perm/sec)   p_kst 7.072170e-01   p_cons 2.578723e-03   p_joint 2.120638e-02

Joint ci ratio: 3.880335e-02	ci left: 2.041463e-02	ci right 2.122450e-02	k: 9992	n:480000
Cons ci ratio: 1.112665e-01	ci left: 2.435624e-03	ci right 2.724599e-03	k: 1237	n:480000
KS ci ratio: 3.640379e-03	ci left: 7.059417e-01	ci right 7.085183e-01	k: 339471	n:480000
NARS2   480000 perm   187 sec   (2570 perm/sec)   p_kst 7.072312e-01   p_cons 2.577083e-03   p_joint 2.081667e-02

Joint ci ratio: 3.944088e-02	ci left: 1.937133e-02	ci right 2.015273e-02	k: 9682	n:490000
Cons ci ratio: 1.102913e-01	ci left: 2.429571e-03	ci right 2.715137e-03	k: 1259	n:490000
KS ci ratio: 3.602834e-03	ci left: 7.059788e-01	ci right 7.085289e-01	k: 346555	n:490000
NARS2   490000 perm   193 sec   (2545 perm/sec)   p_kst 7.072551e-01   p_cons 2.569388e-03   p_joint 1.975918e-02

Joint ci ratio: 3.958243e-02	ci left: 1.885707e-02	ci right 1.962052e-02	k: 9618	n:500000
Cons ci ratio: 1.092132e-01	ci left: 2.429607e-03	ci right 2.712206e-03	k: 1284	n:500000
KS ci ratio: 3.565858e-03	ci left: 7.060807e-01	ci right 7.086049e-01	k: 353672	n:500000
NARS2   500000 perm   198 sec   (2521 perm/sec)   p_kst 7.073440e-01   p_cons 2.568000e-03   p_joint 1.923600e-02

Joint ci ratio: 4.026292e-02	ci left: 1.787954e-02	ci right 1.861614e-02	k: 9305	n:510000
Cons ci ratio: 1.082076e-01	ci left: 2.427747e-03	ci right 2.707363e-03	k: 1308	n:510000
KS ci ratio: 3.530616e-03	ci left: 7.061060e-01	ci right 7.086053e-01	k: 360752	n:510000
NARS2   510000 perm   204 sec   (2498 perm/sec)   p_kst 7.073569e-01   p_cons 2.564706e-03   p_joint 1.824510e-02

Joint ci ratio: 4.057529e-02	ci left: 1.727480e-02	ci right 1.799213e-02	k: 9168	n:520000
Cons ci ratio: 1.073504e-01	ci left: 2.420355e-03	ci right 2.696772e-03	k: 1329	n:520000
KS ci ratio: 3.495164e-03	ci left: 7.062768e-01	ci right 7.087516e-01	k: 367908	n:520000
NARS2   520000 perm   210 sec   (2475 perm/sec)   p_kst 7.075154e-01   p_cons 2.555769e-03   p_joint 1.763077e-02

Joint ci ratio: 3.620048e-02	ci left: 2.125331e-02	ci right 2.203873e-02	k: 11471	n:530000
Cons ci ratio: 1.063555e-01	ci left: 2.420597e-03	ci right 2.694320e-03	k: 1354	n:530000
KS ci ratio: 3.462999e-03	ci left: 7.061731e-01	ci right 7.086246e-01	k: 374922	n:530000
NARS2   530000 perm   216 sec   (2452 perm/sec)   p_kst 7.074000e-01   p_cons 2.554717e-03   p_joint 2.164340e-02

Joint ci ratio: 3.634896e-02	ci left: 2.069997e-02	ci right 2.146814e-02	k: 11384	n:540000
Cons ci ratio: 1.051209e-01	ci left: 2.433464e-03	ci right 2.705250e-03	k: 1386	n:540000
KS ci ratio: 3.430493e-03	ci left: 7.062197e-01	ci right 7.086484e-01	k: 382015	n:540000
NARS2   540000 perm   222 sec   (2430 perm/sec)   p_kst 7.074352e-01   p_cons 2.566667e-03   p_joint 2.108148e-02

Joint ci ratio: 3.546153e-02	ci left: 2.134899e-02	ci right 2.212151e-02	k: 11953	n:550000
Cons ci ratio: 1.041492e-01	ci left: 2.435255e-03	ci right 2.704573e-03	k: 1412	n:550000
KS ci ratio: 3.401274e-03	ci left: 7.059736e-01	ci right 7.083806e-01	k: 388948	n:550000
NARS2   550000 perm   228 sec   (2408 perm/sec)   p_kst 7.071782e-01   p_cons 2.567273e-03   p_joint 2.173273e-02

Joint ci ratio: 3.576625e-02	ci left: 2.062428e-02	ci right 2.137712e-02	k: 11759	n:560000
Cons ci ratio: 1.030605e-01	ci left: 2.443952e-03	ci right 2.711235e-03	k: 1442	n:560000
KS ci ratio: 3.370068e-03	ci left: 7.060706e-01	ci right 7.084558e-01	k: 396068	n:560000
NARS2   560000 perm   235 sec   (2387 perm/sec)   p_kst 7.072643e-01   p_cons 2.575000e-03   p_joint 2.099821e-02

Joint ci ratio: 3.507142e-02	ci left: 2.107110e-02	ci right 2.182501e-02	k: 12224	n:570000
Cons ci ratio: 1.022841e-01	ci left: 2.438681e-03	ci right 2.703257e-03	k: 1464	n:570000
KS ci ratio: 3.340342e-03	ci left: 7.060853e-01	ci right 7.084495e-01	k: 403143	n:570000
NARS2   570000 perm   241 sec   (2366 perm/sec)   p_kst 7.072684e-01   p_cons 2.568421e-03   p_joint 2.144561e-02

Joint ci ratio: 3.514713e-02	ci left: 2.062740e-02	ci right 2.136705e-02	k: 12177	n:580000
Cons ci ratio: 1.013202e-01	ci left: 2.443682e-03	ci right 2.706154e-03	k: 1492	n:580000
KS ci ratio: 3.310810e-03	ci left: 7.061720e-01	ci right 7.085156e-01	k: 410260	n:580000
NARS2   580000 perm   247 sec   (2345 perm/sec)   p_kst 7.073448e-01   p_cons 2.572414e-03   p_joint 2.099483e-02

Joint ci ratio: 3.440932e-02	ci left: 2.115325e-02	ci right 2.189553e-02	k: 12698	n:590000
Cons ci ratio: 1.007825e-01	ci left: 2.428696e-03	ci right 2.688092e-03	k: 1508	n:590000
KS ci ratio: 3.282477e-03	ci left: 7.062016e-01	ci right 7.085252e-01	k: 417345	n:590000
NARS2   590000 perm   254 sec   (2324 perm/sec)   p_kst 7.073644e-01   p_cons 2.555932e-03   p_joint 2.152203e-02

Joint ci ratio: 3.394747e-02	ci left: 2.137082e-02	ci right 2.211047e-02	k: 13043	n:600000
Cons ci ratio: 9.979498e-02	ci left: 2.436964e-03	ci right 2.694543e-03	k: 1538	n:600000
KS ci ratio: 3.255292e-03	ci left: 7.061752e-01	ci right 7.084794e-01	k: 424397	n:600000
NARS2   600000 perm   261 sec   (2303 perm/sec)   p_kst 7.073283e-01   p_cons 2.563333e-03   p_joint 2.173833e-02

Outputting figure to mutsig2_images.part000000000112/NARS2.6_1490_600000_0.70733_0.0025633_0.021738.png
                gene_name: NARS2
               theta_stop: 0.100 
                    nperm: 600000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.0026 
      ci_cons_bounds_left: 0.0024 
     ci_cons_bounds_right: 0.0027 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.022 

Current progress: 41 percent done.
NAT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.274638e-02	ci left: 7.394702e-01	ci right 7.565851e-01	k: 7481	n:10000
Cons ci ratio: 6.577857e-03	ci left: 9.693152e-01	ci right 9.758056e-01	k: 9727	n:10000
KS ci ratio: 3.749121e-02	ci left: 5.123546e-01	ci right 5.320325e-01	k: 5222	n:10000
NAT10   10000 perm   2 sec   (5465 perm/sec)   p_kst 5.222000e-01   p_cons 9.727000e-01   p_joint 7.481000e-01

Outputting figure to mutsig2_images.part000000000112/NAT10.6_3190_10000_0.5222_0.9727_0.7481.png
                gene_name: NAT10
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 43 percent done.
NCAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.010744e-02	ci left: 2.893427e-01	ci right 3.073749e-01	k: 2983	n:10000
Cons ci ratio: 3.674677e-02	ci left: 5.223623e-01	ci right 5.420189e-01	k: 5322	n:10000
KS ci ratio: 6.356810e-02	ci left: 2.666610e-01	ci right 2.842700e-01	k: 2754	n:10000
NCAM1   10000 perm   2 sec   (5506 perm/sec)   p_kst 2.754000e-01   p_cons 5.322000e-01   p_joint 2.983000e-01

Outputting figure to mutsig2_images.part000000000112/NCAM1.6_2855_10000_0.2754_0.5322_0.2983.png
                gene_name: NCAM1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 45 percent done.
NCAPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.977666e-01	ci left: 3.405205e-02	ci right 4.162024e-02	k: 377	n:10000
Cons ci ratio: 4.360219e-02	ci left: 4.371223e-01	ci right 4.567087e-01	k: 4469	n:10000
KS ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
NCAPD3   10000 perm   2 sec   (4534 perm/sec)   p_kst 1.090000e-02   p_cons 4.469000e-01   p_joint 3.770000e-02

Joint ci ratio: 1.558784e-01	ci left: 2.825647e-02	ci right 3.308125e-02	k: 612	n:20000
Cons ci ratio: 3.032771e-02	ci left: 4.481804e-01	ci right 4.620326e-01	k: 9102	n:20000
KS ci ratio: 2.575473e-01	ci left: 9.975082e-03	ci right 1.296948e-02	k: 228	n:20000
NCAPD3   20000 perm   5 sec   (4101 perm/sec)   p_kst 1.140000e-02   p_cons 4.551000e-01   p_joint 3.060000e-02

Joint ci ratio: 1.124937e-01	ci left: 3.670766e-02	ci right 4.111554e-02	k: 1166	n:30000
Cons ci ratio: 2.490175e-02	ci left: 4.466894e-01	ci right 4.579865e-01	k: 13570	n:30000
KS ci ratio: 2.101336e-01	ci left: 1.026113e-02	ci right 1.270152e-02	k: 343	n:30000
NCAPD3   30000 perm   8 sec   (3956 perm/sec)   p_kst 1.143333e-02   p_cons 4.523333e-01   p_joint 3.886667e-02

Joint ci ratio: 9.861587e-02	ci left: 3.612301e-02	ci right 3.989444e-02	k: 1519	n:40000
Cons ci ratio: 2.125657e-02	ci left: 4.546068e-01	ci right 4.643991e-01	k: 18380	n:40000
KS ci ratio: 1.789794e-01	ci left: 1.078871e-02	ci right 1.293303e-02	k: 473	n:40000
NCAPD3   40000 perm   10 sec   (3857 perm/sec)   p_kst 1.182500e-02   p_cons 4.595000e-01   p_joint 3.797500e-02

Joint ci ratio: 1.088992e-01	ci left: 2.388276e-02	ci right 2.665273e-02	k: 1262	n:50000
Cons ci ratio: 1.896827e-02	ci left: 4.562834e-01	ci right 4.650412e-01	k: 23033	n:50000
KS ci ratio: 1.618207e-01	ci left: 1.066069e-02	ci right 1.255665e-02	k: 579	n:50000
NCAPD3   50000 perm   13 sec   (3780 perm/sec)   p_kst 1.158000e-02   p_cons 4.606600e-01   p_joint 2.524000e-02

Joint ci ratio: 9.830538e-02	ci left: 2.454610e-02	ci right 2.710005e-02	k: 1548	n:60000
Cons ci ratio: 1.763300e-02	ci left: 4.476621e-01	ci right 4.556426e-01	k: 27099	n:60000
KS ci ratio: 1.470816e-01	ci left: 1.083887e-02	ci right 1.257551e-02	k: 701	n:60000
NCAPD3   60000 perm   16 sec   (3709 perm/sec)   p_kst 1.168333e-02   p_cons 4.516500e-01   p_joint 2.580000e-02

Joint ci ratio: 9.696594e-02	ci left: 2.170692e-02	ci right 2.393288e-02	k: 1596	n:70000
Cons ci ratio: 1.632152e-02	ci left: 4.480654e-01	ci right 4.554529e-01	k: 31623	n:70000
KS ci ratio: 1.355862e-01	ci left: 1.099939e-02	ci right 1.261289e-02	k: 825	n:70000
NCAPD3   70000 perm   19 sec   (3640 perm/sec)   p_kst 1.178571e-02   p_cons 4.517571e-01   p_joint 2.280000e-02

Joint ci ratio: 8.323764e-02	ci left: 2.585103e-02	ci right 2.810845e-02	k: 2157	n:80000
Cons ci ratio: 1.524955e-02	ci left: 4.488840e-01	ci right 4.557944e-01	k: 36187	n:80000
KS ci ratio: 1.259546e-01	ci left: 1.120852e-02	ci right 1.272718e-02	k: 956	n:80000
NCAPD3   80000 perm   22 sec   (3578 perm/sec)   p_kst 1.195000e-02   p_cons 4.523375e-01   p_joint 2.696250e-02

Joint ci ratio: 7.784924e-02	ci left: 2.633228e-02	ci right 2.847611e-02	k: 2465	n:90000
Cons ci ratio: 1.384945e-02	ci left: 4.676677e-01	ci right 4.742009e-01	k: 42384	n:90000
KS ci ratio: 1.184523e-01	ci left: 1.130962e-02	ci right 1.274431e-02	k: 1081	n:90000
NCAPD3   90000 perm   26 sec   (3520 perm/sec)   p_kst 1.201111e-02   p_cons 4.709333e-01   p_joint 2.738889e-02

Joint ci ratio: 7.133726e-02	ci left: 2.826341e-02	ci right 3.036401e-02	k: 2930	n:100000
Cons ci ratio: 1.313780e-02	ci left: 4.678721e-01	ci right 4.740696e-01	k: 47097	n:100000
KS ci ratio: 1.123370e-01	ci left: 1.135376e-02	ci right 1.271476e-02	k: 1202	n:100000
NCAPD3   100000 perm   29 sec   (3465 perm/sec)   p_kst 1.202000e-02   p_cons 4.709700e-01   p_joint 2.930000e-02

Joint ci ratio: 7.477867e-02	ci left: 2.346055e-02	ci right 2.529192e-02	k: 2680	n:110000
Cons ci ratio: 1.322625e-02	ci left: 4.410517e-01	ci right 4.469331e-01	k: 48839	n:110000
KS ci ratio: 1.070397e-01	ci left: 1.140029e-02	ci right 1.269836e-02	k: 1324	n:110000
NCAPD3   110000 perm   32 sec   (3415 perm/sec)   p_kst 1.203636e-02   p_cons 4.439909e-01   p_joint 2.436364e-02

Joint ci ratio: 5.516220e-02	ci left: 3.926826e-02	ci right 4.150402e-02	k: 4845	n:120000
Cons ci ratio: 1.222025e-02	ci left: 4.588095e-01	ci right 4.644590e-01	k: 55396	n:120000
KS ci ratio: 1.022130e-01	ci left: 1.148905e-02	ci right 1.273469e-02	k: 1452	n:120000
NCAPD3   120000 perm   36 sec   (3366 perm/sec)   p_kst 1.210000e-02   p_cons 4.616333e-01   p_joint 4.037500e-02

Joint ci ratio: 5.475455e-02	ci left: 3.689122e-02	ci right 3.897561e-02	k: 4930	n:130000
Cons ci ratio: 1.172674e-02	ci left: 4.595176e-01	ci right 4.649456e-01	k: 60090	n:130000
KS ci ratio: 9.789145e-02	ci left: 1.158779e-02	ci right 1.278797e-02	k: 1583	n:130000
NCAPD3   130000 perm   39 sec   (3319 perm/sec)   p_kst 1.217692e-02   p_cons 4.622308e-01   p_joint 3.792308e-02

Outputting figure to mutsig2_images.part000000000112/NCAPD3.6_4637_130000_0.012177_0.46223_0.037923.png
                gene_name: NCAPD3
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.039 

Current progress: 47 percent done.
NCAPG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.067940e-02	ci left: 6.105032e-01	ci right 6.296268e-01	k: 6201	n:10000
Cons ci ratio: 2.848497e-02	ci left: 6.449852e-01	ci right 6.637248e-01	k: 6544	n:10000
KS ci ratio: 4.221808e-02	ci left: 4.530892e-01	ci right 4.727324e-01	k: 4629	n:10000
NCAPG2   10000 perm   2 sec   (5041 perm/sec)   p_kst 4.629000e-01   p_cons 6.544000e-01   p_joint 6.201000e-01

Outputting figure to mutsig2_images.part000000000112/NCAPG2.6_3540_10000_0.4629_0.6544_0.6201.png
                gene_name: NCAPG2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 49 percent done.
NCBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.869324e-02	ci left: 1.909179e-01	ci right 2.066579e-01	k: 1987	n:10000
Cons ci ratio: 3.045107e-01	ci left: 1.381734e-02	ci right 1.887010e-02	k: 162	n:10000
KS ci ratio: 1.901106e-02	ci left: 8.017651e-01	ci right 8.172541e-01	k: 8096	n:10000
NCBP1   10000 perm   2 sec   (5370 perm/sec)   p_kst 8.096000e-01   p_cons 1.620000e-02   p_joint 1.987000e-01

Joint ci ratio: 6.773138e-02	ci left: 1.385698e-01	ci right 1.483341e-01	k: 2868	n:20000
Cons ci ratio: 2.216308e-01	ci left: 1.369190e-02	ci right 1.715108e-02	k: 307	n:20000
KS ci ratio: 1.397853e-02	ci left: 7.916100e-01	ci right 8.028035e-01	k: 15945	n:20000
NCBP1   20000 perm   4 sec   (4779 perm/sec)   p_kst 7.972500e-01   p_cons 1.535000e-02   p_joint 1.434000e-01

Joint ci ratio: 6.857052e-02	ci left: 9.485493e-02	ci right 1.016231e-01	k: 2946	n:30000
Cons ci ratio: 1.819649e-01	ci left: 1.384596e-02	ci right 1.664906e-02	k: 456	n:30000
KS ci ratio: 1.140453e-02	ci left: 7.929072e-01	ci right 8.020351e-01	k: 23925	n:30000
NCBP1   30000 perm   7 sec   (4576 perm/sec)   p_kst 7.975000e-01   p_cons 1.520000e-02   p_joint 9.820000e-02

Joint ci ratio: 5.935330e-02	ci left: 9.539913e-02	ci right 1.012593e-01	k: 3932	n:40000
Cons ci ratio: 1.584250e-01	ci left: 1.387966e-02	ci right 1.629149e-02	k: 602	n:40000
KS ci ratio: 9.886524e-03	ci left: 7.932005e-01	ci right 8.011064e-01	k: 31887	n:40000
NCBP1   40000 perm   9 sec   (4440 perm/sec)   p_kst 7.971750e-01   p_cons 1.505000e-02   p_joint 9.830000e-02

Joint ci ratio: 4.991607e-02	ci left: 1.070526e-01	ci right 1.125528e-01	k: 5489	n:50000
Cons ci ratio: 1.436225e-01	ci left: 1.362478e-02	ci right 1.575211e-02	k: 733	n:50000
KS ci ratio: 8.797213e-03	ci left: 7.952990e-01	ci right 8.023463e-01	k: 39942	n:50000
NCBP1   50000 perm   12 sec   (4337 perm/sec)   p_kst 7.988400e-01   p_cons 1.466000e-02   p_joint 1.097800e-01

Joint ci ratio: 4.817042e-02	ci left: 9.700055e-02	ci right 1.018049e-01	k: 5963	n:60000
Cons ci ratio: 1.299019e-01	ci left: 1.397804e-02	ci right 1.593595e-02	k: 896	n:60000
KS ci ratio: 8.043784e-03	ci left: 7.950833e-01	ci right 8.015212e-01	k: 47899	n:60000
NCBP1   60000 perm   14 sec   (4246 perm/sec)   p_kst 7.983167e-01   p_cons 1.493333e-02   p_joint 9.938333e-02

Joint ci ratio: 4.359862e-02	ci left: 1.012669e-01	ci right 1.057946e-01	k: 7246	n:70000
Cons ci ratio: 1.273378e-01	ci left: 1.250596e-02	ci right 1.422045e-02	k: 934	n:70000
KS ci ratio: 7.457055e-03	ci left: 7.948914e-01	ci right 8.008553e-01	k: 55852	n:70000
NCBP1   70000 perm   17 sec   (4158 perm/sec)   p_kst 7.978857e-01   p_cons 1.334286e-02   p_joint 1.035143e-01

Joint ci ratio: 4.119539e-02	ci left: 9.957659e-02	ci right 1.037773e-01	k: 8133	n:80000
Cons ci ratio: 1.191460e-01	ci left: 1.255401e-02	ci right 1.415657e-02	k: 1067	n:80000
KS ci ratio: 6.984854e-03	ci left: 7.946480e-01	ci right 8.002304e-01	k: 63796	n:80000
NCBP1   80000 perm   20 sec   (4086 perm/sec)   p_kst 7.974500e-01   p_cons 1.333750e-02   p_joint 1.016625e-01

Joint ci ratio: 3.794712e-02	ci left: 1.039850e-01	ci right 1.080182e-01	k: 9539	n:90000
Cons ci ratio: 1.121194e-01	ci left: 1.264817e-02	ci right 1.416122e-02	k: 1205	n:90000
KS ci ratio: 6.590023e-03	ci left: 7.945803e-01	ci right 7.998450e-01	k: 71750	n:90000
NCBP1   90000 perm   22 sec   (4015 perm/sec)   p_kst 7.972222e-01   p_cons 1.338889e-02   p_joint 1.059889e-01

Joint ci ratio: 3.402631e-02	ci left: 1.151728e-01	ci right 1.191694e-01	k: 11716	n:100000
Cons ci ratio: 1.049074e-01	ci left: 1.304711e-02	ci right 1.450129e-02	k: 1376	n:100000
KS ci ratio: 6.260585e-03	ci left: 7.942623e-01	ci right 7.992604e-01	k: 79677	n:100000
NCBP1   100000 perm   25 sec   (3948 perm/sec)   p_kst 7.967700e-01   p_cons 1.376000e-02   p_joint 1.171600e-01

Joint ci ratio: 3.401047e-02	ci left: 1.059190e-01	ci right 1.095926e-01	k: 11852	n:110000
Cons ci ratio: 1.001158e-01	ci left: 1.305683e-02	ci right 1.444171e-02	k: 1511	n:110000
KS ci ratio: 5.964993e-03	ci left: 7.946106e-01	ci right 7.993737e-01	k: 87670	n:110000
NCBP1   110000 perm   28 sec   (3883 perm/sec)   p_kst 7.970000e-01   p_cons 1.373636e-02   p_joint 1.077455e-01

Joint ci ratio: 3.010594e-02	ci left: 1.219249e-01	ci right 1.256599e-01	k: 14854	n:120000
Cons ci ratio: 1.033714e-01	ci left: 1.122916e-02	ci right 1.246126e-02	k: 1420	n:120000
KS ci ratio: 5.710897e-03	ci left: 7.947212e-01	ci right 7.992811e-01	k: 95641	n:120000
NCBP1   120000 perm   31 sec   (3823 perm/sec)   p_kst 7.970083e-01   p_cons 1.183333e-02   p_joint 1.237833e-01

Joint ci ratio: 2.928519e-02	ci left: 1.193541e-01	ci right 1.229090e-01	k: 15746	n:130000
Cons ci ratio: 9.998925e-02	ci left: 1.110002e-02	ci right 1.227576e-02	k: 1518	n:130000
KS ci ratio: 5.483992e-03	ci left: 7.949806e-01	ci right 7.993599e-01	k: 103633	n:130000
NCBP1   130000 perm   35 sec   (3764 perm/sec)   p_kst 7.971769e-01   p_cons 1.167692e-02   p_joint 1.211231e-01

Outputting figure to mutsig2_images.part000000000112/NCBP1.6_2465_130000_0.79718_0.011677_0.12112.png
                gene_name: NCBP1
               theta_stop: 0.100 
                    nperm: 130000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 51 percent done.
NAP1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.812426e-02	ci left: 8.162904e-01	ci right 8.313205e-01	k: 8239	n:10000
KS ci ratio: 1.576595e-02	ci left: 8.538604e-01	ci right 8.675287e-01	k: 8608	n:10000
NAP1L2   10000 perm   2 sec   (5881 perm/sec)   p_kst 8.608000e-01   p_cons 8.239000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NAP1L2.5_1387_10000_0.8608_0.8239_1.png
                gene_name: NAP1L2
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
NAPEPLD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.408775e-02	ci left: 1.408974e-01	ci right 1.549084e-01	k: 1478	n:10000
Cons ci ratio: 1.101379e-02	ci left: 9.216228e-01	ci right 9.319269e-01	k: 9269	n:10000
KS ci ratio: 1.347678e-01	ci left: 7.272051e-02	ci right 8.332686e-02	k: 779	n:10000
NAPEPLD   10000 perm   2 sec   (5656 perm/sec)   p_kst 7.790000e-02   p_cons 9.269000e-01   p_joint 1.478000e-01

Joint ci ratio: 6.959732e-02	ci left: 1.321148e-01	ci right 1.416910e-01	k: 2737	n:20000
Cons ci ratio: 7.256221e-03	ci left: 9.324167e-01	ci right 9.392560e-01	k: 18718	n:20000
KS ci ratio: 9.496748e-02	ci left: 7.476008e-02	ci right 8.226301e-02	k: 1569	n:20000
NAPEPLD   20000 perm   4 sec   (5030 perm/sec)   p_kst 7.845000e-02   p_cons 9.359000e-01   p_joint 1.368500e-01

Outputting figure to mutsig2_images.part000000000112/NAPEPLD.5_1198_20000_0.07845_0.9359_0.13685.png
                gene_name: NAPEPLD
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 55 percent done.
NCAPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.700192e-02	ci left: 2.463807e-01	ci right 2.635622e-01	k: 2549	n:10000
Cons ci ratio: 3.398073e-02	ci left: 5.611297e-01	ci right 5.806290e-01	k: 5709	n:10000
KS ci ratio: 9.691176e-02	ci left: 1.337444e-01	ci right 1.474657e-01	k: 1405	n:10000
NCAPD2   10000 perm   2 sec   (4804 perm/sec)   p_kst 1.405000e-01   p_cons 5.709000e-01   p_joint 2.549000e-01

Outputting figure to mutsig2_images.part000000000112/NCAPD2.5_4330_10000_0.1405_0.5709_0.2549.png
                gene_name: NCAPD2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 57 percent done.
NCAPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.230204e-02	ci left: 9.046320e-01	ci right 9.159277e-01	k: 9104	n:10000
Cons ci ratio: 3.073150e-02	ci left: 6.096996e-01	ci right 6.288309e-01	k: 6193	n:10000
KS ci ratio: 2.347668e-02	ci left: 7.272426e-01	ci right 7.446198e-01	k: 7360	n:10000
NCAPH   10000 perm   2 sec   (5622 perm/sec)   p_kst 7.360000e-01   p_cons 6.193000e-01   p_joint 9.104000e-01

Outputting figure to mutsig2_images.part000000000112/NCAPH.5_2298_10000_0.736_0.6193_0.9104.png
                gene_name: NCAPH
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 59 percent done.
NCOA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.427287e-02	ci left: 5.569195e-01	ci right 5.764416e-01	k: 5667	n:10000
Cons ci ratio: 6.211914e-02	ci left: 2.758690e-01	ci right 2.936566e-01	k: 2847	n:10000
KS ci ratio: 2.667938e-02	ci left: 6.741808e-01	ci right 6.925123e-01	k: 6834	n:10000
NCOA5   10000 perm   2 sec   (5455 perm/sec)   p_kst 6.834000e-01   p_cons 2.847000e-01   p_joint 5.667000e-01

Outputting figure to mutsig2_images.part000000000112/NCOA5.5_1768_10000_0.6834_0.2847_0.5667.png
                gene_name: NCOA5
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 61 percent done.
NCOA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.054278e-02	ci left: 3.659962e-01	ci right 3.850763e-01	k: 3755	n:10000
Cons ci ratio: 1.915270e-02	ci left: 7.994305e-01	ci right 8.149901e-01	k: 8073	n:10000
KS ci ratio: 7.136050e-02	ci left: 2.234596e-01	ci right 2.400969e-01	k: 2317	n:10000
NCOA7   10000 perm   2 sec   (5248 perm/sec)   p_kst 2.317000e-01   p_cons 8.073000e-01   p_joint 3.755000e-01

Outputting figure to mutsig2_images.part000000000112/NCOA7.5_2889_10000_0.2317_0.8073_0.3755.png
                gene_name: NCOA7
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 63 percent done.
NCSTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.654465e-02	ci left: 3.153259e-01	ci right 3.337764e-01	k: 3245	n:10000
Cons ci ratio: 6.307811e-02	ci left: 2.697298e-01	ci right 2.873994e-01	k: 2785	n:10000
KS ci ratio: 6.430867e-02	ci left: 2.621082e-01	ci right 2.796255e-01	k: 2708	n:10000
NCSTN   10000 perm   2 sec   (5257 perm/sec)   p_kst 2.708000e-01   p_cons 2.785000e-01   p_joint 3.245000e-01

Outputting figure to mutsig2_images.part000000000112/NCSTN.5_2198_10000_0.2708_0.2785_0.3245.png
                gene_name: NCSTN
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 65 percent done.
NBPF15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.064529e-01	ci left: 1.130085e-01	ci right 1.258142e-01	k: 1193	n:10000
Cons ci ratio: 5.432516e-02	ci left: 3.329974e-01	ci right 3.516945e-01	k: 3423	n:10000
KS ci ratio: 1.462753e-01	ci left: 6.207973e-02	ci right 7.197432e-02	k: 669	n:10000
NBPF15   10000 perm   2 sec   (5593 perm/sec)   p_kst 6.690000e-02   p_cons 3.423000e-01   p_joint 1.193000e-01

Joint ci ratio: 7.453255e-02	ci left: 1.169532e-01	ci right 1.260571e-01	k: 2429	n:20000
Cons ci ratio: 4.025369e-02	ci left: 3.151279e-01	ci right 3.281240e-01	k: 6432	n:20000
KS ci ratio: 9.943628e-02	ci left: 6.850386e-02	ci right 7.572114e-02	k: 1441	n:20000
NBPF15   20000 perm   4 sec   (4985 perm/sec)   p_kst 7.205000e-02   p_cons 3.216000e-01   p_joint 1.214500e-01

Outputting figure to mutsig2_images.part000000000112/NBPF15.4_2073_20000_0.07205_0.3216_0.12145.png
                gene_name: NBPF15
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 67 percent done.
NCEH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.496836e-02	ci left: 2.065875e-01	ci right 2.227791e-01	k: 2146	n:10000
Cons ci ratio: 8.208438e-02	ci left: 1.780224e-01	ci right 1.933612e-01	k: 1856	n:10000
KS ci ratio: 7.376657e-02	ci left: 2.120120e-01	ci right 2.283513e-01	k: 2201	n:10000
NCEH1   10000 perm   2 sec   (5282 perm/sec)   p_kst 2.201000e-01   p_cons 1.856000e-01   p_joint 2.146000e-01

Outputting figure to mutsig2_images.part000000000112/NCEH1.4_1367_10000_0.2201_0.1856_0.2146.png
                gene_name: NCEH1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 69 percent done.
NCOA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.482032e-02	ci left: 5.491024e-01	ci right 5.686632e-01	k: 5589	n:10000
Cons ci ratio: 3.625527e-02	ci left: 5.290697e-01	ci right 5.487076e-01	k: 5389	n:10000
KS ci ratio: 3.359399e-02	ci left: 5.667444e-01	ci right 5.862110e-01	k: 5765	n:10000
NCOA4   10000 perm   2 sec   (6052 perm/sec)   p_kst 5.765000e-01   p_cons 5.389000e-01   p_joint 5.589000e-01

Outputting figure to mutsig2_images.part000000000112/NCOA4.4_2003_10000_0.5765_0.5389_0.5589.png
                gene_name: NCOA4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 71 percent done.
NAPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.484586e-02	ci left: 1.683846e-01	ci right 1.834047e-01	k: 1758	n:10000
Cons ci ratio: 5.561642e-02	ci left: 3.225714e-01	ci right 3.411266e-01	k: 3318	n:10000
KS ci ratio: 8.795749e-02	ci left: 1.583626e-01	ci right 1.730327e-01	k: 1656	n:10000
NAPA   10000 perm   2 sec   (6334 perm/sec)   p_kst 1.656000e-01   p_cons 3.318000e-01   p_joint 1.758000e-01

Outputting figure to mutsig2_images.part000000000112/NAPA.3_932_10000_0.1656_0.3318_0.1758.png
                gene_name: NAPA
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 73 percent done.
NARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.031596e-02	ci left: 9.303005e-01	ci right 9.400441e-01	k: 9353	n:10000
KS ci ratio: 1.759120e-02	ci left: 8.249328e-01	ci right 8.396731e-01	k: 8324	n:10000
NARS   10000 perm   2 sec   (6021 perm/sec)   p_kst 8.324000e-01   p_cons 9.353000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NARS.3_1703_10000_0.8324_0.9353_1.png
                gene_name: NARS
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
NAT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.510623e-02	ci left: 3.266419e-01	ci right 3.452538e-01	k: 3359	n:10000
Cons ci ratio: 7.441439e-03	ci left: 9.615247e-01	ci right 9.688010e-01	k: 9653	n:10000
KS ci ratio: 8.958253e-02	ci left: 1.534534e-01	ci right 1.679449e-01	k: 1606	n:10000
NAT9   10000 perm   2 sec   (6588 perm/sec)   p_kst 1.606000e-01   p_cons 9.653000e-01   p_joint 3.359000e-01

Outputting figure to mutsig2_images.part000000000112/NAT9.3_648_10000_0.1606_0.9653_0.3359.png
                gene_name: NAT9
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 76 percent done.
NBPF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.529048e-02	ci left: 4.184738e-01	ci right 4.379680e-01	k: 4282	n:10000
KS ci ratio: 1.982702e-02	ci left: 7.882705e-01	ci right 8.041566e-01	k: 7963	n:10000
NBPF1   10000 perm   2 sec   (5515 perm/sec)   p_kst 7.963000e-01   p_cons 4.282000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NBPF1.3_3517_10000_0.7963_0.4282_1.png
                gene_name: NBPF1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
NCDN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.913041e-02	ci left: 2.348172e-01	ci right 2.517326e-01	k: 2432	n:10000
Cons ci ratio: 6.353627e-02	ci left: 2.668589e-01	ci right 2.844719e-01	k: 2756	n:10000
KS ci ratio: 5.433722e-02	ci left: 3.328981e-01	ci right 3.515939e-01	k: 3422	n:10000
NCDN   10000 perm   2 sec   (6252 perm/sec)   p_kst 3.422000e-01   p_cons 2.756000e-01   p_joint 2.432000e-01

Outputting figure to mutsig2_images.part000000000112/NCDN.3_2218_10000_0.3422_0.2756_0.2432.png
                gene_name: NCDN
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 80 percent done.
NCF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.721712e-02	ci left: 6.654179e-01	ci right 6.838802e-01	k: 6747	n:10000
Cons ci ratio: 5.908968e-02	ci left: 2.964797e-01	ci right 3.146337e-01	k: 3055	n:10000
KS ci ratio: 1.299784e-02	ci left: 8.949790e-01	ci right 9.067863e-01	k: 9010	n:10000
NCF4   10000 perm   2 sec   (6109 perm/sec)   p_kst 9.010000e-01   p_cons 3.055000e-01   p_joint 6.747000e-01

Outputting figure to mutsig2_images.part000000000112/NCF4.3_1301_10000_0.901_0.3055_0.6747.png
                gene_name: NCF4
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 82 percent done.
NCKIPSD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.769573e-02	ci left: 6.576653e-01	ci right 6.762373e-01	k: 6670	n:10000
KS ci ratio: 3.234426e-02	ci left: 5.852018e-01	ci right 6.045429e-01	k: 5949	n:10000
NCKIPSD   10000 perm   2 sec   (5827 perm/sec)   p_kst 5.949000e-01   p_cons 6.670000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NCKIPSD.3_2221_10000_0.5949_0.667_1.png
                gene_name: NCKIPSD
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
NCL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.910833e-02	ci left: 3.795277e-01	ci right 3.987369e-01	k: 3891	n:10000
KS ci ratio: 1.645643e-02	ci left: 8.430535e-01	ci right 8.571419e-01	k: 8502	n:10000
NCL   10000 perm   2 sec   (5276 perm/sec)   p_kst 8.502000e-01   p_cons 3.891000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000112/NCL.3_2189_10000_0.8502_0.3891_1.png
                gene_name: NCL
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
NARF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.735644e-02	ci left: 2.444035e-01	ci right 2.615407e-01	k: 2529	n:10000
Cons ci ratio: 7.402527e-02	ci left: 2.108283e-01	ci right 2.271357e-01	k: 2189	n:10000
KS ci ratio: 5.942548e-02	ci left: 2.941004e-01	ci right 3.122144e-01	k: 3031	n:10000
NARF   10000 perm   2 sec   (6459 perm/sec)   p_kst 3.031000e-01   p_cons 2.189000e-01   p_joint 2.529000e-01

Outputting figure to mutsig2_images.part000000000112/NARF.2_1557_10000_0.3031_0.2189_0.2529.png
                gene_name: NARF
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 88 percent done.
NBN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.210389e-02	ci left: 2.759680e-01	ci right 2.937575e-01	k: 2848	n:10000
Cons ci ratio: 4.795085e-02	ci left: 3.908763e-01	ci right 4.101817e-01	k: 4005	n:10000
KS ci ratio: 9.909574e-02	ci left: 1.285551e-01	ci right 1.420581e-01	k: 1352	n:10000
NBN   10000 perm   2 sec   (6234 perm/sec)   p_kst 1.352000e-01   p_cons 4.005000e-01   p_joint 2.848000e-01

Outputting figure to mutsig2_images.part000000000112/NBN.2_2329_10000_0.1352_0.4005_0.2848.png
                gene_name: NBN
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 90 percent done.
NBPF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.451070e-02	ci left: 5.535118e-01	ci right 5.730513e-01	k: 5633	n:10000
Cons ci ratio: 1.312124e-02	ci left: 8.932351e-01	ci right 9.051312e-01	k: 8993	n:10000
KS ci ratio: 6.475109e-02	ci left: 2.594365e-01	ci right 2.768988e-01	k: 2681	n:10000
NBPF7   10000 perm   1 sec   (6762 perm/sec)   p_kst 2.681000e-01   p_cons 8.993000e-01   p_joint 5.633000e-01

Outputting figure to mutsig2_images.part000000000112/NBPF7.2_1298_10000_0.2681_0.8993_0.5633.png
                gene_name: NBPF7
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 92 percent done.
NCF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.549450e-02	ci left: 4.162808e-01	ci right 4.357623e-01	k: 4260	n:10000
Cons ci ratio: 9.982218e-02	ci left: 1.268913e-01	ci right 1.403229e-01	k: 1335	n:10000
KS ci ratio: 1.023059e-02	ci left: 9.313350e-01	ci right 9.410090e-01	k: 9363	n:10000
NCF2   10000 perm   2 sec   (6334 perm/sec)   p_kst 9.363000e-01   p_cons 1.335000e-01   p_joint 4.260000e-01

Outputting figure to mutsig2_images.part000000000112/NCF2.2_1641_10000_0.9363_0.1335_0.426.png
                gene_name: NCF2
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 94 percent done.
NCOR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.424458e-02	ci left: 7.144176e-01	ci right 7.320522e-01	k: 7233	n:10000
Cons ci ratio: 2.808310e-02	ci left: 6.514250e-01	ci right 6.700813e-01	k: 6608	n:10000
KS ci ratio: 3.781548e-02	ci left: 5.080524e-01	ci right 5.277371e-01	k: 5179	n:10000
NCOR2   10000 perm   2 sec   (4342 perm/sec)   p_kst 5.179000e-01   p_cons 6.608000e-01   p_joint 7.233000e-01

Outputting figure to mutsig2_images.part000000000112/NCOR2.2_7757_10000_0.5179_0.6608_0.7233.png
                gene_name: NCOR2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 96 percent done.
NDC80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
Cons ci ratio: 4.908768e-02	ci left: 3.797268e-01	ci right 3.989377e-01	k: 3893	n:10000
KS ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
NDC80   10000 perm   2 sec   (6264 perm/sec)   p_kst 9.300000e-03   p_cons 3.893000e-01   p_joint 1.340000e-02

Joint ci ratio: 2.289106e-01	ci left: 1.279482e-02	ci right 1.614852e-02	k: 288	n:20000
Cons ci ratio: 3.476845e-02	ci left: 3.817864e-01	ci right 3.953460e-01	k: 7771	n:20000
KS ci ratio: 3.002544e-01	ci left: 7.182016e-03	ci right 9.763947e-03	k: 168	n:20000
NDC80   20000 perm   4 sec   (5533 perm/sec)   p_kst 8.400000e-03   p_cons 3.885500e-01   p_joint 1.440000e-02

Joint ci ratio: 2.000777e-01	ci left: 1.136853e-02	ci right 1.392715e-02	k: 378	n:30000
Cons ci ratio: 2.835046e-02	ci left: 3.836770e-01	ci right 3.947444e-01	k: 11676	n:30000
KS ci ratio: 2.458934e-01	ci left: 7.367115e-03	ci right 9.463093e-03	k: 251	n:30000
NDC80   30000 perm   6 sec   (5273 perm/sec)   p_kst 8.366667e-03   p_cons 3.892000e-01   p_joint 1.260000e-02

Joint ci ratio: 6.944727e-02	ci left: 7.120719e-02	ci right 7.635489e-02	k: 2950	n:40000
Cons ci ratio: 2.348422e-02	ci left: 4.057233e-01	ci right 4.153897e-01	k: 16422	n:40000
KS ci ratio: 2.107481e-01	ci left: 7.671049e-03	ci right 9.501366e-03	k: 342	n:40000
NDC80   40000 perm   8 sec   (5097 perm/sec)   p_kst 8.550000e-03   p_cons 4.105500e-01   p_joint 7.375000e-02

Joint ci ratio: 6.133596e-02	ci left: 7.319895e-02	ci right 7.785047e-02	k: 3775	n:50000
Cons ci ratio: 2.107079e-02	ci left: 4.047259e-01	ci right 4.133647e-01	k: 20452	n:50000
KS ci ratio: 1.886658e-01	ci left: 7.752087e-03	ci right 9.385738e-03	k: 427	n:50000
NDC80   50000 perm   10 sec   (4935 perm/sec)   p_kst 8.540000e-03   p_cons 4.090400e-01   p_joint 7.550000e-02

Joint ci ratio: 5.123708e-02	ci left: 8.660141e-02	ci right 9.117178e-02	k: 5332	n:60000
Cons ci ratio: 1.921940e-02	ci left: 4.054949e-01	ci right 4.133806e-01	k: 24566	n:60000
KS ci ratio: 1.709897e-01	ci left: 7.940509e-03	ci right 9.440928e-03	k: 520	n:60000
NDC80   60000 perm   12 sec   (4802 perm/sec)   p_kst 8.666667e-03   p_cons 4.094333e-01   p_joint 8.886667e-02

Joint ci ratio: 4.397867e-02	ci left: 9.968250e-02	ci right 1.041791e-01	k: 7134	n:70000
Cons ci ratio: 1.777452e-02	ci left: 4.063104e-01	ci right 4.136114e-01	k: 28697	n:70000
KS ci ratio: 1.566038e-01	ci left: 8.176331e-03	ci right 9.579120e-03	k: 620	n:70000
NDC80   70000 perm   15 sec   (4627 perm/sec)   p_kst 8.857143e-03   p_cons 4.099571e-01   p_joint 1.019143e-01

Joint ci ratio: 4.309008e-02	ci left: 9.172631e-02	ci right 9.577821e-02	k: 7499	n:80000
Cons ci ratio: 1.663888e-02	ci left: 4.061894e-01	ci right 4.130171e-01	k: 32768	n:80000
KS ci ratio: 1.462521e-01	ci left: 8.248748e-03	ci right 9.562238e-03	k: 711	n:80000
NDC80   80000 perm   18 sec   (4535 perm/sec)   p_kst 8.887500e-03   p_cons 4.096000e-01   p_joint 9.373750e-02

Joint ci ratio: 4.245687e-02	ci left: 8.468230e-02	ci right 8.836662e-02	k: 7786	n:90000
Cons ci ratio: 1.568949e-02	ci left: 4.063180e-01	ci right 4.127545e-01	k: 36858	n:90000
KS ci ratio: 1.377145e-01	ci left: 8.307452e-03	ci right 9.546733e-03	k: 802	n:90000
NDC80   90000 perm   20 sec   (4445 perm/sec)   p_kst 8.911111e-03   p_cons 4.095333e-01   p_joint 8.651111e-02

Joint ci ratio: 4.030677e-02	ci left: 8.466568e-02	ci right 8.815836e-02	k: 8640	n:100000
Cons ci ratio: 1.489681e-02	ci left: 4.060803e-01	ci right 4.121850e-01	k: 40913	n:100000
KS ci ratio: 1.312592e-01	ci left: 8.259449e-03	ci right 9.429307e-03	k: 883	n:100000
NDC80   100000 perm   23 sec   (4366 perm/sec)   p_kst 8.830000e-03   p_cons 4.091300e-01   p_joint 8.640000e-02

Joint ci ratio: 3.417876e-02	ci left: 1.049806e-01	ci right 1.086401e-01	k: 11748	n:110000
Cons ci ratio: 1.419778e-02	ci left: 4.064194e-01	ci right 4.122399e-01	k: 45026	n:110000
KS ci ratio: 1.249177e-01	ci left: 8.318179e-03	ci right 9.435219e-03	k: 975	n:110000
NDC80   110000 perm   26 sec   (4288 perm/sec)   p_kst 8.863636e-03   p_cons 4.093273e-01   p_joint 1.068000e-01

Joint ci ratio: 3.195043e-02	ci left: 1.096748e-01	ci right 1.132440e-01	k: 13374	n:120000
Cons ci ratio: 1.358733e-02	ci left: 4.067574e-01	ci right 4.123303e-01	k: 49145	n:120000
KS ci ratio: 1.199827e-01	ci left: 8.287395e-03	ci right 9.353212e-03	k: 1057	n:120000
NDC80   120000 perm   28 sec   (4212 perm/sec)   p_kst 8.808333e-03   p_cons 4.095417e-01   p_joint 1.114500e-01

Joint ci ratio: 3.305307e-02	ci left: 9.601480e-02	ci right 9.924933e-02	k: 12691	n:130000
Cons ci ratio: 1.304277e-02	ci left: 4.072939e-01	ci right 4.126486e-01	k: 53296	n:130000
KS ci ratio: 1.160528e-01	ci left: 8.194843e-03	ci right 9.211869e-03	k: 1130	n:130000
NDC80   130000 perm   31 sec   (4145 perm/sec)   p_kst 8.692308e-03   p_cons 4.099692e-01   p_joint 9.762308e-02

Joint ci ratio: 3.275518e-02	ci left: 9.128499e-02	ci right 9.433190e-02	k: 12992	n:140000
Cons ci ratio: 1.257181e-02	ci left: 4.072579e-01	ci right 4.124173e-01	k: 57377	n:140000
KS ci ratio: 1.122036e-01	ci left: 8.157667e-03	ci right 9.134276e-03	k: 1209	n:140000
NDC80   140000 perm   34 sec   (4080 perm/sec)   p_kst 8.635714e-03   p_cons 4.098357e-01   p_joint 9.280000e-02

Joint ci ratio: 3.169734e-02	ci left: 9.105820e-02	ci right 9.399757e-02	k: 13878	n:150000
Cons ci ratio: 1.215581e-02	ci left: 4.069367e-01	ci right 4.119202e-01	k: 61414	n:150000
KS ci ratio: 1.081648e-01	ci left: 8.210267e-03	ci right 9.155539e-03	k: 1301	n:150000
NDC80   150000 perm   37 sec   (4018 perm/sec)   p_kst 8.673333e-03   p_cons 4.094267e-01   p_joint 9.252000e-02

Joint ci ratio: 3.055259e-02	ci left: 9.186048e-02	ci right 9.471678e-02	k: 14925	n:160000
Cons ci ratio: 1.176226e-02	ci left: 4.073263e-01	ci right 4.121519e-01	k: 65558	n:160000
KS ci ratio: 1.040820e-01	ci left: 8.329901e-03	ci right 9.250531e-03	k: 1405	n:160000
NDC80   160000 perm   40 sec   (3957 perm/sec)   p_kst 8.781250e-03   p_cons 4.097375e-01   p_joint 9.328125e-02

Joint ci ratio: 2.966088e-02	ci left: 9.178701e-02	ci right 9.455629e-02	k: 15838	n:170000
Cons ci ratio: 1.142015e-02	ci left: 4.070141e-01	ci right 4.116948e-01	k: 69590	n:170000
KS ci ratio: 1.005634e-01	ci left: 8.413108e-03	ci right 9.309644e-03	k: 1505	n:170000
NDC80   170000 perm   44 sec   (3900 perm/sec)   p_kst 8.852941e-03   p_cons 4.093529e-01   p_joint 9.316471e-02

Joint ci ratio: 2.807074e-02	ci left: 9.637625e-02	ci right 9.912561e-02	k: 17594	n:180000
Cons ci ratio: 1.110268e-02	ci left: 4.068940e-01	ci right 4.114423e-01	k: 73650	n:180000
KS ci ratio: 9.821562e-02	ci left: 8.341172e-03	ci right 9.208093e-03	k: 1578	n:180000
NDC80   180000 perm   47 sec   (3844 perm/sec)   p_kst 8.766667e-03   p_cons 4.091667e-01   p_joint 9.774444e-02

Outputting figure to mutsig2_images.part000000000112/NDC80.2_1993_180000_0.0087667_0.40917_0.097744.png
                gene_name: NDC80
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.0088 
        ci_ks_bounds_left: 0.0083 
       ci_ks_bounds_right: 0.0092 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.099 

Current progress: 98 percent done.
NDFIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.788656e-02	ci left: 8.201532e-01	ci right 8.350554e-01	k: 8277	n:10000
Cons ci ratio: 2.605256e-02	ci left: 6.844592e-01	ci right 7.026280e-01	k: 6936	n:10000
KS ci ratio: 3.651866e-02	ci left: 5.254655e-01	ci right 5.451139e-01	k: 5353	n:10000
NDFIP1   10000 perm   1 sec   (6832 perm/sec)   p_kst 5.353000e-01   p_cons 6.936000e-01   p_joint 8.277000e-01

Outputting figure to mutsig2_images.part000000000112/NDFIP1.2_694_10000_0.5353_0.6936_0.8277.png
                gene_name: NDFIP1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000112
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 112 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1558>
Subject: Job 9894032: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1558>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000113> was used as the working directory.
Started at Sat Oct  6 00:20:54 2012
Results reported at Sat Oct  6 00:30:17 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000113.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000113.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 113  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000113.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    610.85 sec.
    Max Memory :      3527 MB
    Max Swap   :      5961 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
113
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 113
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 113: processing genes 10098 - 10187
Calculating significance of each gene.
Using projection method.
10098	NDFIP2	1
10099	NDN	2.169946e-01
10100	NDNL2	4.601181e-01
10101	NDOR1	1
10102	NDP	1
10103	NDRG1	7.495097e-01
10104	NDRG2	2.749497e-01
10105	NDRG3	7.641297e-01
10106	NDRG4	5.114848e-01
10107	NDST1	6.129481e-01
In gene NDST2 the following bins exceed PROBCAP:
    COAD-AA-3851	categ 6	N = 2572    n = 1	mu =   3.95e-07
10108	NDST2	4.085195e-01
10109	NDST3	4.803955e-03
10110	NDST4	2.368562e-01
10111	NDUFA1	1.505408e-01
10112	NDUFA10	5.141034e-01
10113	NDUFA11	1
10114	NDUFA12	1.071522e-01
10115	NDUFA13	2.678181e-01
10116	NDUFA2	1
10117	NDUFA3	1
10118	NDUFA4	1.562284e-01
10119	NDUFA4L2	1
10120	NDUFA5	1
10121	NDUFA6	1
10122	NDUFA7	1
10123	NDUFA8	1
10124	NDUFA9	2.621662e-01
10125	NDUFAB1	1
10126	NDUFAF1	1
10127	NDUFAF2	2.782830e-01
10128	NDUFAF3	5.276730e-01
10129	NDUFAF4	4.427427e-04
10130	NDUFB1	3.985330e-01
10131	NDUFB10	1
10132	NDUFB11	1
10133	NDUFB2	2.986686e-01
10134	NDUFB3	3.305169e-01
10135	NDUFB4	1
10136	NDUFB5	1
10137	NDUFB6	2.659015e-01
10138	NDUFB7	1
10139	NDUFB8	1
10140	NDUFB9	1.542289e-01
10141	NDUFC1	1
10142	NDUFC2	2.897360e-01
10143	NDUFS1	4.470948e-02
10144	NDUFS2	6.003591e-01
10145	NDUFS3	4.421511e-01
10146	NDUFS4	6.237449e-01
10147	NDUFS5	4.831349e-01
10148	NDUFS6	3.461190e-02
10149	NDUFS7	1
10150	NDUFS8	1
10151	NDUFV1	8.624163e-01
10152	NDUFV2	1
10153	NDUFV3	8.896681e-01
10154	NEB	8.755556e-01
10155	NEBL	2.989536e-01
10156	NECAB1	4.562197e-01
10157	NECAB2	5.734461e-01
10158	NECAB3	2.563773e-01
10159	NECAP1	1
10160	NECAP2	1.871726e-01
10161	NEDD1	6.398256e-02
10162	NEDD4	7.132175e-01
10163	NEDD4L	4.888698e-01
10164	NEDD8	2.019347e-01
10165	NEDD9	4.540288e-01
10166	NEFH	7.714569e-01
10167	NEFL	6.033560e-01
10168	NEFM	5.362200e-01
10169	NEGR1	5.503975e-02
10170	NEIL1	1.868277e-01
10171	NEIL2	2.490807e-01
10172	NEIL3	5.915013e-01
10173	NEK1	4.602718e-01
10174	NEK10	8.645306e-01
10175	NEK11	5.396345e-01
10176	NEK2	5.735968e-01
10177	NEK3	3.612255e-01
10178	NEK4	6.599261e-02
10179	NEK5	1.941424e-01
10180	NEK6	4.898355e-01
10181	NEK7	9.870838e-02
10182	NEK8	7.131817e-01
10183	NEK9	8.931833e-01
10184	NELF	1
10185	NELL1	1.451191e-03
10186	NELL2	2.888503e-02
10187	NENF	1.389956e-01
Done

Running MutSig 2:
Scatter job 113: processing genes 10098 - 10187
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NEB
Processing conservation and coverage...
37% 75% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.523883e-02	ci left: 5.431911e-01	ci right 5.627780e-01	k: 5530	n:10000
Cons ci ratio: 4.010601e-02	ci left: 4.786573e-01	ci right 4.983494e-01	k: 4885	n:10000
KS ci ratio: 5.021042e-02	ci left: 3.690799e-01	ci right 3.881908e-01	k: 3786	n:10000
NEB   10000 perm   9 sec   (1135 perm/sec)   p_kst 3.786000e-01   p_cons 4.885000e-01   p_joint 5.530000e-01

Outputting figure to mutsig2_images.part000000000113/NEB.54_26407_10000_0.3786_0.4885_0.553.png
                gene_name: NEB
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 2 percent done.
NELL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.396839e-01	ci left: 6.787957e-02	ci right 7.817082e-02	k: 729	n:10000
Cons ci ratio: 2.625735e-01	ci left: 1.893425e-02	ci right 2.474894e-02	k: 217	n:10000
KS ci ratio: 5.465244e-02	ci left: 3.303159e-01	ci right 3.489775e-01	k: 3396	n:10000
NELL1   10000 perm   2 sec   (4490 perm/sec)   p_kst 3.396000e-01   p_cons 2.170000e-02   p_joint 7.290000e-02

Joint ci ratio: 8.848931e-02	ci left: 8.538264e-02	ci right 9.333722e-02	k: 1786	n:20000
Cons ci ratio: 1.881123e-01	ci left: 1.924843e-02	ci right 2.329242e-02	k: 424	n:20000
KS ci ratio: 3.832001e-02	ci left: 3.368670e-01	ci right 3.500785e-01	k: 6869	n:20000
NELL1   20000 perm   5 sec   (4034 perm/sec)   p_kst 3.434500e-01   p_cons 2.120000e-02   p_joint 8.930000e-02

Joint ci ratio: 7.589222e-02	ci left: 7.855894e-02	ci right 8.478902e-02	k: 2449	n:30000
Cons ci ratio: 1.512475e-01	ci left: 2.024150e-02	ci right 2.358531e-02	k: 656	n:30000
KS ci ratio: 3.126272e-02	ci left: 3.384571e-01	ci right 3.492398e-01	k: 10315	n:30000
NELL1   30000 perm   8 sec   (3940 perm/sec)   p_kst 3.438333e-01   p_cons 2.186667e-02   p_joint 8.163333e-02

Joint ci ratio: 7.467469e-02	ci left: 6.203824e-02	ci right 6.687522e-02	k: 2577	n:40000
Cons ci ratio: 1.315229e-01	ci left: 2.029445e-02	ci right 2.317557e-02	k: 868	n:40000
KS ci ratio: 2.702438e-02	ci left: 3.400164e-01	ci right 3.493561e-01	k: 13787	n:40000
NELL1   40000 perm   10 sec   (3854 perm/sec)   p_kst 3.446750e-01   p_cons 2.170000e-02   p_joint 6.442500e-02

Joint ci ratio: 7.052046e-02	ci left: 5.614390e-02	ci right 6.026758e-02	k: 2909	n:50000
Cons ci ratio: 1.078525e-01	ci left: 2.435006e-02	ci right 2.714537e-02	k: 1286	n:50000
KS ci ratio: 2.421206e-02	ci left: 3.397555e-01	ci right 3.481026e-01	k: 17196	n:50000
NELL1   50000 perm   13 sec   (3791 perm/sec)   p_kst 3.439200e-01   p_cons 2.572000e-02   p_joint 5.818000e-02

Joint ci ratio: 5.786574e-02	ci left: 6.899035e-02	ci right 7.311792e-02	k: 4262	n:60000
Cons ci ratio: 1.059638e-01	ci left: 2.111710e-02	ci right 2.349609e-02	k: 1337	n:60000
KS ci ratio: 2.206938e-02	ci left: 3.407966e-01	ci right 3.484184e-01	k: 20676	n:60000
NELL1   60000 perm   16 sec   (3722 perm/sec)   p_kst 3.446000e-01   p_cons 2.228333e-02   p_joint 7.103333e-02

Joint ci ratio: 5.882287e-02	ci left: 5.789961e-02	ci right 6.142272e-02	k: 4175	n:70000
Cons ci ratio: 9.772000e-02	ci left: 2.137223e-02	ci right 2.358189e-02	k: 1572	n:70000
KS ci ratio: 2.044014e-02	ci left: 3.409078e-01	ci right 3.479622e-01	k: 24110	n:70000
NELL1   70000 perm   19 sec   (3661 perm/sec)   p_kst 3.444286e-01   p_cons 2.245714e-02   p_joint 5.964286e-02

Outputting figure to mutsig2_images.part000000000113/NELL1.14_2513_70000_0.34443_0.022457_0.059643.png
                gene_name: NELL1
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.061 

Current progress: 4 percent done.
NELL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.633841e-02	ci left: 2.501382e-01	ci right 2.674026e-01	k: 2587	n:10000
Cons ci ratio: 5.287355e-02	ci left: 3.452172e-01	ci right 3.640676e-01	k: 3546	n:10000
KS ci ratio: 7.374510e-02	ci left: 2.121107e-01	ci right 2.284526e-01	k: 2202	n:10000
NELL2   10000 perm   3 sec   (3142 perm/sec)   p_kst 2.202000e-01   p_cons 3.546000e-01   p_joint 2.587000e-01

Outputting figure to mutsig2_images.part000000000113/NELL2.12_2783_10000_0.2202_0.3546_0.2587.png
                gene_name: NELL2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 6 percent done.
NDST3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.331365e-02	ci left: 7.299703e-01	ci right 7.472905e-01	k: 7387	n:10000
Cons ci ratio: 2.837802e-02	ci left: 6.466956e-01	ci right 6.654134e-01	k: 6561	n:10000
KS ci ratio: 3.918628e-02	ci left: 4.902514e-01	ci right 5.099486e-01	k: 5001	n:10000
NDST3   10000 perm   2 sec   (4220 perm/sec)   p_kst 5.001000e-01   p_cons 6.561000e-01   p_joint 7.387000e-01

Outputting figure to mutsig2_images.part000000000113/NDST3.10_2674_10000_0.5001_0.6561_0.7387.png
                gene_name: NDST3
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 8 percent done.
NEDD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.141455e-02	ci left: 9.164670e-01	ci right 9.270857e-01	k: 9219	n:10000
Cons ci ratio: 4.094156e-02	ci left: 4.683670e-01	ci right 4.880457e-01	k: 4782	n:10000
KS ci ratio: 7.788970e-03	ci left: 9.581703e-01	ci right 9.657575e-01	k: 9621	n:10000
NEDD4   10000 perm   2 sec   (4233 perm/sec)   p_kst 9.621000e-01   p_cons 4.782000e-01   p_joint 9.219000e-01

Outputting figure to mutsig2_images.part000000000113/NEDD4.10_4371_10000_0.9621_0.4782_0.9219.png
                gene_name: NEDD4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 10 percent done.
NEBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.242483e-02	ci left: 5.839977e-01	ci right 6.033477e-01	k: 5937	n:10000
Cons ci ratio: 6.496620e-02	ci left: 2.581502e-01	ci right 2.755858e-01	k: 2668	n:10000
KS ci ratio: 1.018770e-02	ci left: 9.318524e-01	ci right 9.414913e-01	k: 9368	n:10000
NEBL   10000 perm   2 sec   (4235 perm/sec)   p_kst 9.368000e-01   p_cons 2.668000e-01   p_joint 5.937000e-01

Outputting figure to mutsig2_images.part000000000113/NEBL.9_3530_10000_0.9368_0.2668_0.5937.png
                gene_name: NEBL
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 12 percent done.
NEK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.763965e-02	ci left: 6.585713e-01	ci right 6.771308e-01	k: 6679	n:10000
Cons ci ratio: 3.932758e-02	ci left: 4.884519e-01	ci right 5.081491e-01	k: 4983	n:10000
KS ci ratio: 4.082690e-02	ci left: 4.697655e-01	ci right 4.894464e-01	k: 4796	n:10000
NEK1   10000 perm   3 sec   (3275 perm/sec)   p_kst 4.796000e-01   p_cons 4.983000e-01   p_joint 6.679000e-01

Outputting figure to mutsig2_images.part000000000113/NEK1.9_3909_10000_0.4796_0.4983_0.6679.png
                gene_name: NEK1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 14 percent done.
NEDD4L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.661417e-02	ci left: 5.241642e-01	ci right 5.438160e-01	k: 5340	n:10000
Cons ci ratio: 3.780034e-02	ci left: 5.082525e-01	ci right 5.279369e-01	k: 5181	n:10000
KS ci ratio: 5.248318e-02	ci left: 3.485962e-01	ci right 3.674866e-01	k: 3580	n:10000
NEDD4L   10000 perm   2 sec   (4143 perm/sec)   p_kst 3.580000e-01   p_cons 5.181000e-01   p_joint 5.340000e-01

Outputting figure to mutsig2_images.part000000000113/NEDD4L.8_3080_10000_0.358_0.5181_0.534.png
                gene_name: NEDD4L
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 16 percent done.
NEK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.300599e-02	ci left: 5.753695e-01	ci right 5.947809e-01	k: 5851	n:10000
Cons ci ratio: 6.071583e-02	ci left: 2.851807e-01	ci right 3.031394e-01	k: 2941	n:10000
KS ci ratio: 2.808310e-02	ci left: 6.514250e-01	ci right 6.700813e-01	k: 6608	n:10000
NEK4   10000 perm   2 sec   (4960 perm/sec)   p_kst 6.608000e-01   p_cons 2.941000e-01   p_joint 5.851000e-01

Outputting figure to mutsig2_images.part000000000113/NEK4.8_2590_10000_0.6608_0.2941_0.5851.png
                gene_name: NEK4
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 18 percent done.
NEDD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.693242e-02	ci left: 6.700507e-01	ci right 6.884448e-01	k: 6793	n:10000
Cons ci ratio: 3.403624e-02	ci left: 5.603277e-01	ci right 5.798314e-01	k: 5701	n:10000
KS ci ratio: 3.757392e-02	ci left: 5.112540e-01	ci right 5.309337e-01	k: 5211	n:10000
NEDD1   10000 perm   2 sec   (4329 perm/sec)   p_kst 5.211000e-01   p_cons 5.701000e-01   p_joint 6.793000e-01

Outputting figure to mutsig2_images.part000000000113/NEDD1.7_2064_10000_0.5211_0.5701_0.6793.png
                gene_name: NEDD1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 20 percent done.
NDUFS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.211988e-02	ci left: 3.517769e-01	ci right 3.707040e-01	k: 3612	n:10000
Cons ci ratio: 7.695773e-02	ci left: 1.980113e-01	ci right 2.139604e-01	k: 2059	n:10000
KS ci ratio: 5.187238e-02	ci left: 3.539639e-01	ci right 3.729157e-01	k: 3634	n:10000
NDUFS1   10000 perm   2 sec   (4310 perm/sec)   p_kst 3.634000e-01   p_cons 2.059000e-01   p_joint 3.612000e-01

Outputting figure to mutsig2_images.part000000000113/NDUFS1.6_2256_10000_0.3634_0.2059_0.3612.png
                gene_name: NDUFS1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 22 percent done.
NEDD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.681507e-02	ci left: 6.719646e-01	ci right 6.903298e-01	k: 6812	n:10000
Cons ci ratio: 8.141213e-02	ci left: 1.804823e-01	ci right 1.958998e-01	k: 1881	n:10000
KS ci ratio: 3.770962e-02	ci left: 5.094531e-01	ci right 5.291357e-01	k: 5193	n:10000
NEDD9   10000 perm   2 sec   (4766 perm/sec)   p_kst 5.193000e-01   p_cons 1.881000e-01   p_joint 6.812000e-01

Outputting figure to mutsig2_images.part000000000113/NEDD9.6_2619_10000_0.5193_0.1881_0.6812.png
                gene_name: NEDD9
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 24 percent done.
NEK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.524926e-02	ci left: 8.618211e-01	ci right 8.751635e-01	k: 8686	n:10000
KS ci ratio: 7.989211e-03	ci left: 9.561821e-01	ci right 9.639469e-01	k: 9602	n:10000
NEK5   10000 perm   3 sec   (3949 perm/sec)   p_kst 9.602000e-01   p_cons 8.686000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NEK5.6_2207_10000_0.9602_0.8686_1.png
                gene_name: NEK5
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
NDST2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.083070e-02	ci left: 1.826474e-01	ci right 1.981334e-01	k: 1903	n:10000
Cons ci ratio: 2.866147e-02	ci left: 6.421684e-01	ci right 6.609432e-01	k: 6516	n:10000
KS ci ratio: 1.455778e-01	ci left: 6.265923e-02	ci right 7.259445e-02	k: 675	n:10000
NDST2   10000 perm   2 sec   (4599 perm/sec)   p_kst 6.750000e-02   p_cons 6.516000e-01   p_joint 1.903000e-01

Joint ci ratio: 6.831624e-02	ci left: 1.364999e-01	ci right 1.462047e-01	k: 2826	n:20000
Cons ci ratio: 2.014719e-02	ci left: 6.476616e-01	ci right 6.608935e-01	k: 13086	n:20000
KS ci ratio: 1.026161e-01	ci left: 6.450023e-02	ci right 7.152600e-02	k: 1359	n:20000
NDST2   20000 perm   5 sec   (4132 perm/sec)   p_kst 6.795000e-02   p_cons 6.543000e-01   p_joint 1.413000e-01

Joint ci ratio: 5.389580e-02	ci left: 1.458450e-01	ci right 1.539563e-01	k: 4496	n:30000
Cons ci ratio: 1.643580e-02	ci left: 6.492882e-01	ci right 6.600818e-01	k: 19641	n:30000
KS ci ratio: 8.468047e-02	ci left: 6.383672e-02	ci right 6.951422e-02	k: 1999	n:30000
NDST2   30000 perm   8 sec   (3885 perm/sec)   p_kst 6.663333e-02   p_cons 6.547000e-01   p_joint 1.498667e-01

Outputting figure to mutsig2_images.part000000000113/NDST2.5_2704_30000_0.066633_0.6547_0.14987.png
                gene_name: NDST2
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 28 percent done.
NDUFAF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.609487e-02	ci left: 4.099023e-01	ci right 4.293446e-01	k: 4196	n:10000
Cons ci ratio: 2.293342e-02	ci left: 7.363367e-01	ci right 7.535204e-01	k: 7450	n:10000
KS ci ratio: 6.717872e-02	ci left: 2.453921e-01	ci right 2.625515e-01	k: 2539	n:10000
NDUFAF4   10000 perm   2 sec   (5090 perm/sec)   p_kst 2.539000e-01   p_cons 7.450000e-01   p_joint 4.196000e-01

Outputting figure to mutsig2_images.part000000000113/NDUFAF4.5_540_10000_0.2539_0.745_0.4196.png
                gene_name: NDUFAF4
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 30 percent done.
NEFM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.849152e-02	ci left: 8.102954e-01	ci right 8.255190e-01	k: 8180	n:10000
Cons ci ratio: 2.194382e-02	ci left: 7.529207e-01	ci right 7.697268e-01	k: 7614	n:10000
KS ci ratio: 3.749121e-02	ci left: 5.123546e-01	ci right 5.320325e-01	k: 5222	n:10000
NEFM   10000 perm   2 sec   (4010 perm/sec)   p_kst 5.222000e-01   p_cons 7.614000e-01   p_joint 8.180000e-01

Outputting figure to mutsig2_images.part000000000113/NEFM.5_2763_10000_0.5222_0.7614_0.818.png
                gene_name: NEFM
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 32 percent done.
NDST1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.202778e-02	ci left: 2.764632e-01	ci right 2.942620e-01	k: 2853	n:10000
Cons ci ratio: 1.116124e-01	ci left: 1.036391e-01	ci right 1.159892e-01	k: 1097	n:10000
KS ci ratio: 4.987073e-02	ci left: 3.722635e-01	ci right 3.914054e-01	k: 3818	n:10000
NDST1   10000 perm   2 sec   (4574 perm/sec)   p_kst 3.818000e-01   p_cons 1.097000e-01   p_joint 2.853000e-01

Joint ci ratio: 4.327114e-02	ci left: 2.846113e-01	ci right 2.972495e-01	k: 5818	n:20000
Cons ci ratio: 8.001216e-02	ci left: 1.028466e-01	ci right 1.114680e-01	k: 2142	n:20000
KS ci ratio: 3.633687e-02	ci left: 3.611117e-01	ci right 3.745268e-01	k: 7356	n:20000
NDST1   20000 perm   5 sec   (4273 perm/sec)   p_kst 3.678000e-01   p_cons 1.071000e-01   p_joint 2.909000e-01

Outputting figure to mutsig2_images.part000000000113/NDST1.4_2705_20000_0.3678_0.1071_0.2909.png
                gene_name: NDST1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 34 percent done.
NDST4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.829530e-02	ci left: 5.017506e-01	ci right 5.214426e-01	k: 5116	n:10000
Cons ci ratio: 3.570447e-02	ci left: 5.366803e-01	ci right 5.562926e-01	k: 5465	n:10000
KS ci ratio: 5.722203e-02	ci left: 3.101662e-01	ci right 3.285391e-01	k: 3193	n:10000
NDST4   10000 perm   2 sec   (5456 perm/sec)   p_kst 3.193000e-01   p_cons 5.465000e-01   p_joint 5.116000e-01

Outputting figure to mutsig2_images.part000000000113/NDST4.4_2671_10000_0.3193_0.5465_0.5116.png
                gene_name: NDST4
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 36 percent done.
NEFH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.323372e-02	ci left: 4.413126e-01	ci right 4.609159e-01	k: 4511	n:10000
Cons ci ratio: 6.086234e-02	ci left: 2.841899e-01	ci right 3.021308e-01	k: 2931	n:10000
KS ci ratio: 4.656160e-02	ci left: 4.050199e-01	ci right 4.244298e-01	k: 4147	n:10000
NEFH   10000 perm   2 sec   (4619 perm/sec)   p_kst 4.147000e-01   p_cons 2.931000e-01   p_joint 4.511000e-01

Outputting figure to mutsig2_images.part000000000113/NEFH.4_3079_10000_0.4147_0.2931_0.4511.png
                gene_name: NEFH
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 38 percent done.
NEFL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.963916e-02	ci left: 3.744525e-01	ci right 3.936151e-01	k: 3840	n:10000
KS ci ratio: 1.549534e-02	ci left: 8.580439e-01	ci right 8.715428e-01	k: 8649	n:10000
NEFL   10000 perm   2 sec   (5388 perm/sec)   p_kst 8.649000e-01   p_cons 3.840000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NEFL.4_1649_10000_0.8649_0.384_1.png
                gene_name: NEFL
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
NEGR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.315188e-02	ci left: 3.428323e-01	ci right 3.616539e-01	k: 3522	n:10000
Cons ci ratio: 7.609790e-02	ci left: 2.016579e-01	ci right 2.177115e-01	k: 2096	n:10000
KS ci ratio: 5.029588e-02	ci left: 3.682841e-01	ci right 3.873871e-01	k: 3778	n:10000
NEGR1   10000 perm   2 sec   (5957 perm/sec)   p_kst 3.778000e-01   p_cons 2.096000e-01   p_joint 3.522000e-01

Outputting figure to mutsig2_images.part000000000113/NEGR1.4_1093_10000_0.3778_0.2096_0.3522.png
                gene_name: NEGR1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 42 percent done.
NEIL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.788293e-02	ci left: 6.546456e-01	ci right 6.732588e-01	k: 6640	n:10000
Cons ci ratio: 5.169162e-03	ci left: 9.802710e-01	ci right 9.854422e-01	k: 9830	n:10000
KS ci ratio: 3.778521e-02	ci left: 5.084526e-01	ci right 5.281367e-01	k: 5183	n:10000
NEIL1   10000 perm   2 sec   (6052 perm/sec)   p_kst 5.183000e-01   p_cons 9.830000e-01   p_joint 6.640000e-01

Outputting figure to mutsig2_images.part000000000113/NEIL1.4_1209_10000_0.5183_0.983_0.664.png
                gene_name: NEIL1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 44 percent done.
NEK10
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.280068e-02	ci left: 7.385604e-01	ci right 7.556954e-01	k: 7472	n:10000
Cons ci ratio: 6.666854e-02	ci left: 2.482593e-01	ci right 2.654825e-01	k: 2568	n:10000
KS ci ratio: 1.064407e-02	ci left: 9.262689e-01	ci right 9.362781e-01	k: 9314	n:10000
NEK10   10000 perm   2 sec   (5145 perm/sec)   p_kst 9.314000e-01   p_cons 2.568000e-01   p_joint 7.472000e-01

Outputting figure to mutsig2_images.part000000000113/NEK10.3_2231_10000_0.9314_0.2568_0.7472.png
                gene_name: NEK10
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 46 percent done.
NEK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.504835e-02	ci left: 8.648849e-01	ci right 8.780979e-01	k: 8716	n:10000
Cons ci ratio: 4.529048e-02	ci left: 4.184738e-01	ci right 4.379680e-01	k: 4282	n:10000
KS ci ratio: 1.950885e-02	ci left: 7.935450e-01	ci right 8.092791e-01	k: 8015	n:10000
NEK3   10000 perm   2 sec   (4893 perm/sec)   p_kst 8.015000e-01   p_cons 4.282000e-01   p_joint 8.716000e-01

Outputting figure to mutsig2_images.part000000000113/NEK3.4_1581_10000_0.8015_0.4282_0.8716.png
                gene_name: NEK3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 48 percent done.
NDN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.391793e-02	ci left: 8.817580e-01	ci right 8.942150e-01	k: 8881	n:10000
KS ci ratio: 1.709095e-02	ci left: 8.329712e-01	ci right 8.474300e-01	k: 8403	n:10000
NDN   10000 perm   2 sec   (5502 perm/sec)   p_kst 8.403000e-01   p_cons 8.881000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NDN.3_970_10000_0.8403_0.8881_1.png
                gene_name: NDN
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
NDRG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.111290e-02	ci left: 2.825056e-01	ci right 3.004161e-01	k: 2914	n:10000
Cons ci ratio: 1.445118e-02	ci left: 8.738790e-01	ci right 8.866985e-01	k: 8804	n:10000
KS ci ratio: 7.060744e-02	ci left: 2.272116e-01	ci right 2.439427e-01	k: 2355	n:10000
NDRG2   10000 perm   2 sec   (6131 perm/sec)   p_kst 2.355000e-01   p_cons 8.804000e-01   p_joint 2.914000e-01

Outputting figure to mutsig2_images.part000000000113/NDRG2.3_1176_10000_0.2355_0.8804_0.2914.png
                gene_name: NDRG2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 52 percent done.
NDUFA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.883815e-01	ci left: 3.757958e-02	ci right 4.549032e-02	k: 414	n:10000
Cons ci ratio: 2.458026e-01	ci left: 2.174701e-02	ci right 2.793403e-02	k: 247	n:10000
KS ci ratio: 6.434124e-02	ci left: 2.619103e-01	ci right 2.794235e-01	k: 2706	n:10000
NDUFA9   10000 perm   2 sec   (5945 perm/sec)   p_kst 2.706000e-01   p_cons 2.470000e-02   p_joint 4.140000e-02

Joint ci ratio: 1.218494e-01	ci left: 4.619466e-02	ci right 5.223726e-02	k: 983	n:20000
Cons ci ratio: 1.739927e-01	ci left: 2.259326e-02	ci right 2.694640e-02	k: 494	n:20000
KS ci ratio: 4.541016e-02	ci left: 2.652457e-01	ci right 2.776208e-01	k: 5428	n:20000
NDUFA9   20000 perm   4 sec   (4996 perm/sec)   p_kst 2.714000e-01   p_cons 2.470000e-02   p_joint 4.915000e-02

Joint ci ratio: 1.164438e-01	ci left: 3.427666e-02	ci right 3.854706e-02	k: 1091	n:30000
Cons ci ratio: 1.408546e-01	ci left: 2.339150e-02	ci right 2.696793e-02	k: 754	n:30000
KS ci ratio: 3.712268e-02	ci left: 2.659098e-01	ci right 2.760013e-01	k: 8128	n:30000
NDUFA9   30000 perm   6 sec   (4762 perm/sec)   p_kst 2.709333e-01   p_cons 2.513333e-02   p_joint 3.636667e-02

Joint ci ratio: 7.638331e-02	ci left: 5.941055e-02	ci right 6.415331e-02	k: 2470	n:40000
Cons ci ratio: 1.228422e-01	ci left: 2.329805e-02	ci right 2.637146e-02	k: 992	n:40000
KS ci ratio: 3.231823e-02	ci left: 2.645344e-01	ci right 2.732492e-01	k: 10755	n:40000
NDUFA9   40000 perm   9 sec   (4682 perm/sec)   p_kst 2.688750e-01   p_cons 2.480000e-02   p_joint 6.175000e-02

Joint ci ratio: 7.724717e-02	ci left: 4.708483e-02	ci right 5.088775e-02	k: 2448	n:50000
Cons ci ratio: 1.154959e-01	ci left: 2.121787e-02	ci right 2.383797e-02	k: 1125	n:50000
KS ci ratio: 2.896821e-02	ci left: 2.641611e-01	ci right 2.719458e-01	k: 13402	n:50000
NDUFA9   50000 perm   11 sec   (4575 perm/sec)   p_kst 2.680400e-01   p_cons 2.250000e-02   p_joint 4.896000e-02

Joint ci ratio: 6.852689e-02	ci left: 4.994168e-02	ci right 5.350184e-02	k: 3102	n:60000
Cons ci ratio: 9.916299e-02	ci left: 2.412320e-02	ci right 2.665632e-02	k: 1522	n:60000
KS ci ratio: 2.644492e-02	ci left: 2.644921e-01	ci right 2.715970e-01	k: 16082	n:60000
NDUFA9   60000 perm   13 sec   (4486 perm/sec)   p_kst 2.680333e-01   p_cons 2.536667e-02   p_joint 5.170000e-02

Outputting figure to mutsig2_images.part000000000113/NDUFA9.3_1178_60000_0.26803_0.025367_0.0517.png
                gene_name: NDUFA9
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.054 

Current progress: 54 percent done.
NDUFS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.653175e-02	ci left: 3.154251e-01	ci right 3.338771e-01	k: 3246	n:10000
Cons ci ratio: 5.645451e-02	ci left: 3.160206e-01	ci right 3.344813e-01	k: 3252	n:10000
KS ci ratio: 1.231453e-01	ci left: 8.630741e-02	ci right 9.773155e-02	k: 919	n:10000
NDUFS2   10000 perm   2 sec   (5824 perm/sec)   p_kst 9.190000e-02   p_cons 3.252000e-01   p_joint 3.246000e-01

Joint ci ratio: 7.401342e-02	ci left: 1.184290e-01	ci right 1.275809e-01	k: 2459	n:20000
Cons ci ratio: 3.832850e-02	ci left: 3.367675e-01	ci right 3.499781e-01	k: 6867	n:20000
KS ci ratio: 8.715687e-02	ci left: 8.783284e-02	ci right 9.588628e-02	k: 1836	n:20000
NDUFS2   20000 perm   4 sec   (4897 perm/sec)   p_kst 9.180000e-02   p_cons 3.433500e-01   p_joint 1.229500e-01

Outputting figure to mutsig2_images.part000000000113/NDUFS2.3_1468_20000_0.0918_0.34335_0.12295.png
                gene_name: NDUFS2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 56 percent done.
NECAB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.621813e-02	ci left: 6.817379e-01	ci right 6.999508e-01	k: 6909	n:10000
KS ci ratio: 1.572648e-02	ci left: 8.544725e-01	ci right 8.681163e-01	k: 8614	n:10000
NECAB3   10000 perm   2 sec   (5908 perm/sec)   p_kst 8.614000e-01   p_cons 6.909000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NECAB3.3_1239_10000_0.8614_0.6909_1.png
                gene_name: NECAB3
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
NECAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.436366e-02	ci left: 5.556165e-01	ci right 5.751454e-01	k: 5654	n:10000
Cons ci ratio: 3.383534e-02	ci left: 5.632351e-01	ci right 5.827224e-01	k: 5730	n:10000
KS ci ratio: 4.922212e-02	ci left: 3.784330e-01	ci right 3.976323e-01	k: 3880	n:10000
NECAP2   10000 perm   2 sec   (6588 perm/sec)   p_kst 3.880000e-01   p_cons 5.730000e-01   p_joint 5.654000e-01

Outputting figure to mutsig2_images.part000000000113/NECAP2.3_930_10000_0.388_0.573_0.5654.png
                gene_name: NECAP2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 60 percent done.
NEIL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.002348e-02	ci left: 9.338193e-01	ci right 9.433233e-01	k: 9387	n:10000
Cons ci ratio: 2.470529e-02	ci left: 7.067471e-01	ci right 7.245272e-01	k: 7157	n:10000
KS ci ratio: 4.294682e-02	ci left: 4.446055e-01	ci right 4.642211e-01	k: 4544	n:10000
NEIL3   10000 perm   2 sec   (5581 perm/sec)   p_kst 4.544000e-01   p_cons 7.157000e-01   p_joint 9.387000e-01

Outputting figure to mutsig2_images.part000000000113/NEIL3.3_1858_10000_0.4544_0.7157_0.9387.png
                gene_name: NEIL3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 62 percent done.
NEK11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.162371e-02	ci left: 7.582837e-01	ci right 7.749607e-01	k: 7667	n:10000
KS ci ratio: 2.344045e-02	ci left: 7.278487e-01	ci right 7.452133e-01	k: 7366	n:10000
NEK11   10000 perm   2 sec   (5526 perm/sec)   p_kst 7.366000e-01   p_cons 7.667000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NEK11.3_2020_10000_0.7366_0.7667_1.png
                gene_name: NEK11
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
NEK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.805859e-02	ci left: 2.405485e-01	ci right 2.575979e-01	k: 2490	n:10000
Cons ci ratio: 9.072868e-02	ci left: 1.501165e-01	ci right 1.644837e-01	k: 1572	n:10000
KS ci ratio: 9.468960e-02	ci left: 1.393291e-01	ci right 1.532776e-01	k: 1462	n:10000
NEK7   10000 perm   2 sec   (6292 perm/sec)   p_kst 1.462000e-01   p_cons 1.572000e-01   p_joint 2.490000e-01

Outputting figure to mutsig2_images.part000000000113/NEK7.3_945_10000_0.1462_0.1572_0.249.png
                gene_name: NEK7
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 66 percent done.
NEK8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.048275e-02	ci left: 2.867661e-01	ci right 3.047530e-01	k: 2957	n:10000
Cons ci ratio: 4.544803e-02	ci left: 4.167792e-01	ci right 4.362636e-01	k: 4265	n:10000
KS ci ratio: 8.154559e-02	ci left: 1.799903e-01	ci right 1.953921e-01	k: 1876	n:10000
NEK8   10000 perm   2 sec   (5742 perm/sec)   p_kst 1.876000e-01   p_cons 4.265000e-01   p_joint 2.957000e-01

Outputting figure to mutsig2_images.part000000000113/NEK8.3_2139_10000_0.1876_0.4265_0.2957.png
                gene_name: NEK8
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 68 percent done.
NDNL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.154618e-03	ci left: 9.545097e-01	ci right 9.624204e-01	k: 9586	n:10000
Cons ci ratio: 2.945480e-02	ci left: 6.295976e-01	ci right 6.485213e-01	k: 6391	n:10000
KS ci ratio: 2.599129e-02	ci left: 6.854671e-01	ci right 7.036194e-01	k: 6946	n:10000
NDNL2   10000 perm   2 sec   (5845 perm/sec)   p_kst 6.946000e-01   p_cons 6.391000e-01   p_joint 9.586000e-01

Outputting figure to mutsig2_images.part000000000113/NDNL2.2_919_10000_0.6946_0.6391_0.9586.png
                gene_name: NDNL2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 70 percent done.
NDRG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.105967e-01	ci left: 1.053948e-01	ci right 1.178325e-01	k: 1115	n:10000
Cons ci ratio: 1.028188e-02	ci left: 9.307143e-01	ci right 9.404301e-01	k: 9357	n:10000
KS ci ratio: 2.743868e-01	ci left: 1.725330e-02	ci right 2.283124e-02	k: 199	n:10000
NDRG4   10000 perm   2 sec   (6582 perm/sec)   p_kst 1.990000e-02   p_cons 9.357000e-01   p_joint 1.115000e-01

Joint ci ratio: 1.156747e-01	ci left: 5.115076e-02	ci right 5.747960e-02	k: 1085	n:20000
Cons ci ratio: 7.262263e-03	ci left: 9.323142e-01	ci right 9.391584e-01	k: 18716	n:20000
KS ci ratio: 2.027314e-01	ci left: 1.648770e-02	ci right 2.025418e-02	k: 366	n:20000
NDRG4   20000 perm   3 sec   (5751 perm/sec)   p_kst 1.830000e-02   p_cons 9.358000e-01   p_joint 5.425000e-02

Joint ci ratio: 4.954592e-02	ci left: 1.683389e-01	ci right 1.769246e-01	k: 5178	n:30000
Cons ci ratio: 5.919174e-03	ci left: 9.331713e-01	ci right 9.387439e-01	k: 28080	n:30000
KS ci ratio: 1.626208e-01	ci left: 1.745315e-02	ci right 2.057432e-02	k: 569	n:30000
NDRG4   30000 perm   6 sec   (5243 perm/sec)   p_kst 1.896667e-02   p_cons 9.360000e-01   p_joint 1.726000e-01

Joint ci ratio: 5.618934e-02	ci left: 1.054188e-01	ci right 1.115382e-01	k: 4338	n:40000
Cons ci ratio: 5.158975e-03	ci left: 9.327687e-01	ci right 9.376179e-01	k: 37409	n:40000
KS ci ratio: 1.388002e-01	ci left: 1.819155e-02	ci right 2.092882e-02	k: 781	n:40000
NDRG4   40000 perm   8 sec   (4899 perm/sec)   p_kst 1.952500e-02   p_cons 9.352250e-01   p_joint 1.084500e-01

Joint ci ratio: 4.168229e-02	ci left: 1.471582e-01	ci right 1.534425e-01	k: 7514	n:50000
Cons ci ratio: 4.657639e-03	ci left: 9.318697e-01	ci right 9.362398e-01	k: 46704	n:50000
KS ci ratio: 1.232181e-01	ci left: 1.861623e-02	ci right 2.107996e-02	k: 991	n:50000
NDRG4   50000 perm   10 sec   (4808 perm/sec)   p_kst 1.982000e-02   p_cons 9.340800e-01   p_joint 1.502800e-01

Joint ci ratio: 3.513697e-02	ci left: 1.687728e-01	ci right 1.748256e-01	k: 10307	n:60000
Cons ci ratio: 4.237229e-03	ci left: 9.324909e-01	ci right 9.364669e-01	k: 56070	n:60000
KS ci ratio: 1.120224e-01	ci left: 1.887851e-02	ci right 2.113492e-02	k: 1199	n:60000
NDRG4   60000 perm   13 sec   (4634 perm/sec)   p_kst 1.998333e-02   p_cons 9.345000e-01   p_joint 1.717833e-01

Joint ci ratio: 2.854403e-02	ci left: 2.092044e-01	ci right 2.152766e-01	k: 14856	n:70000
Cons ci ratio: 3.922402e-03	ci left: 9.326565e-01	ci right 9.363360e-01	k: 65416	n:70000
KS ci ratio: 1.034867e-01	ci left: 1.904529e-02	ci right 2.113762e-02	k: 1405	n:70000
NDRG4   70000 perm   16 sec   (4452 perm/sec)   p_kst 2.007143e-02   p_cons 9.345143e-01   p_joint 2.122286e-01

Joint ci ratio: 2.667501e-02	ci left: 2.097193e-01	ci right 2.154016e-01	k: 17004	n:80000
Cons ci ratio: 3.665340e-03	ci left: 9.329027e-01	ci right 9.363407e-01	k: 74771	n:80000
KS ci ratio: 9.600901e-02	ci left: 1.943159e-02	ci right 2.140341e-02	k: 1632	n:80000
NDRG4   80000 perm   18 sec   (4389 perm/sec)   p_kst 2.040000e-02   p_cons 9.346375e-01   p_joint 2.125500e-01

Outputting figure to mutsig2_images.part000000000113/NDRG4.2_1240_80000_0.0204_0.93464_0.21255.png
                gene_name: NDRG4
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 72 percent done.
NDUFA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.669586e-03	ci left: 9.766355e-01	ci right 9.822803e-01	k: 9796	n:10000
Cons ci ratio: 1.651450e-02	ci left: 8.421365e-01	ci right 8.562594e-01	k: 8493	n:10000
KS ci ratio: 2.293946e-02	ci left: 7.362356e-01	ci right 7.534215e-01	k: 7449	n:10000
NDUFA10   10000 perm   2 sec   (6453 perm/sec)   p_kst 7.449000e-01   p_cons 8.493000e-01   p_joint 9.796000e-01

Outputting figure to mutsig2_images.part000000000113/NDUFA10.2_1108_10000_0.7449_0.8493_0.9796.png
                gene_name: NDUFA10
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 74 percent done.
NDUFA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.150104e-02	ci left: 2.227686e-01	ci right 2.393884e-01	k: 2310	n:10000
KS ci ratio: 2.321706e-02	ci left: 7.315870e-01	ci right 7.488729e-01	k: 7403	n:10000
NDUFA12   10000 perm   1 sec   (7155 perm/sec)   p_kst 7.403000e-01   p_cons 2.310000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NDUFA12.2_454_10000_0.7403_0.231_1.png
                gene_name: NDUFA12
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
NDUFA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.435067e-02	ci left: 4.287437e-01	ci right 4.482921e-01	k: 4385	n:10000
Cons ci ratio: 2.497861e-02	ci left: 7.022067e-01	ci right 7.200701e-01	k: 7112	n:10000
KS ci ratio: 1.141993e-01	ci left: 9.934967e-02	ci right 1.114813e-01	k: 1053	n:10000
NDUFA4   10000 perm   2 sec   (5889 perm/sec)   p_kst 1.053000e-01   p_cons 7.112000e-01   p_joint 4.385000e-01

Joint ci ratio: 3.085276e-02	ci left: 4.396933e-01	ci right 4.535222e-01	k: 8932	n:20000
Cons ci ratio: 1.763502e-02	ci left: 7.055177e-01	ci right 7.181206e-01	k: 14237	n:20000
KS ci ratio: 8.060316e-02	ci left: 1.014715e-01	ci right 1.100435e-01	k: 2114	n:20000
NDUFA4   20000 perm   4 sec   (5398 perm/sec)   p_kst 1.057000e-01   p_cons 7.118500e-01   p_joint 4.466000e-01

Outputting figure to mutsig2_images.part000000000113/NDUFA4.2_262_20000_0.1057_0.71185_0.4466.png
                gene_name: NDUFA4
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 78 percent done.
NDUFB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.795085e-02	ci left: 3.908763e-01	ci right 4.101817e-01	k: 4005	n:10000
KS ci ratio: 5.012518e-02	ci left: 3.698758e-01	ci right 3.889945e-01	k: 3794	n:10000
NDUFB9   10000 perm   2 sec   (6188 perm/sec)   p_kst 3.794000e-01   p_cons 4.005000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NDUFB9.2_556_10000_0.3794_0.4005_1.png
                gene_name: NDUFB9
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
NDUFS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.337758e-02	ci left: 2.678488e-01	ci right 2.854815e-01	k: 2766	n:10000
Cons ci ratio: 7.788726e-02	ci left: 1.941685e-01	ci right 2.100054e-01	k: 2020	n:10000
KS ci ratio: 5.585553e-02	ci left: 3.206853e-01	ci right 3.392138e-01	k: 3299	n:10000
NDUFS3   10000 perm   2 sec   (6622 perm/sec)   p_kst 3.299000e-01   p_cons 2.020000e-01   p_joint 2.766000e-01

Outputting figure to mutsig2_images.part000000000113/NDUFS3.2_823_10000_0.3299_0.202_0.2766.png
                gene_name: NDUFS3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 82 percent done.
NDUFS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.513094e-02	ci left: 3.264433e-01	ci right 3.450525e-01	k: 3357	n:10000
Cons ci ratio: 5.844174e-02	ci left: 3.011400e-01	ci right 3.193706e-01	k: 3102	n:10000
KS ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
NDUFS5   10000 perm   1 sec   (7276 perm/sec)   p_kst 2.275000e-01   p_cons 3.102000e-01   p_joint 3.357000e-01

Outputting figure to mutsig2_images.part000000000113/NDUFS5.2_329_10000_0.2275_0.3102_0.3357.png
                gene_name: NDUFS5
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 84 percent done.
NDUFS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.632269e-02	ci left: 4.075108e-01	ci right 4.269375e-01	k: 4172	n:10000
Cons ci ratio: 4.252495e-02	ci left: 4.494958e-01	ci right 4.691280e-01	k: 4593	n:10000
KS ci ratio: 5.204093e-02	ci left: 3.524727e-01	ci right 3.714078e-01	k: 3619	n:10000
NDUFS6   10000 perm   1 sec   (7049 perm/sec)   p_kst 3.619000e-01   p_cons 4.593000e-01   p_joint 4.172000e-01

Outputting figure to mutsig2_images.part000000000113/NDUFS6.2_391_10000_0.3619_0.4593_0.4172.png
                gene_name: NDUFS6
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 86 percent done.
NDUFV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.241153e-02	ci left: 1.768418e-01	ci right 1.921425e-01	k: 1844	n:10000
KS ci ratio: 5.260898e-02	ci left: 3.475029e-01	ci right 3.663805e-01	k: 3569	n:10000
NDUFV1   10000 perm   2 sec   (5397 perm/sec)   p_kst 3.569000e-01   p_cons 1.844000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NDUFV1.2_1435_10000_0.3569_0.1844_1.png
                gene_name: NDUFV1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
NECAB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.246706e-02	ci left: 9.023712e-01	ci right 9.137898e-01	k: 9082	n:10000
Cons ci ratio: 3.877317e-02	ci left: 4.955504e-01	ci right 5.152465e-01	k: 5054	n:10000
KS ci ratio: 3.007699e-02	ci left: 6.198475e-01	ci right 6.388771e-01	k: 6294	n:10000
NECAB2   10000 perm   2 sec   (6035 perm/sec)   p_kst 6.294000e-01   p_cons 5.054000e-01   p_joint 9.082000e-01

Outputting figure to mutsig2_images.part000000000113/NECAB2.2_1213_10000_0.6294_0.5054_0.9082.png
                gene_name: NECAB2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 90 percent done.
NEIL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.291978e-02	ci left: 3.448197e-01	ci right 3.636653e-01	k: 3542	n:10000
Cons ci ratio: 5.257462e-02	ci left: 3.478011e-01	ci right 3.666822e-01	k: 3572	n:10000
KS ci ratio: 7.037302e-02	ci left: 2.283967e-01	ci right 2.451569e-01	k: 2367	n:10000
NEIL2   10000 perm   1 sec   (6979 perm/sec)   p_kst 2.367000e-01   p_cons 3.572000e-01   p_joint 3.542000e-01

Outputting figure to mutsig2_images.part000000000113/NEIL2.2_1020_10000_0.2367_0.3572_0.3542.png
                gene_name: NEIL2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 92 percent done.
NEK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.036125e-02	ci left: 6.154261e-01	ci right 6.345011e-01	k: 6250	n:10000
KS ci ratio: 3.791403e-02	ci left: 5.067519e-01	ci right 5.264384e-01	k: 5166	n:10000
NEK2   10000 perm   2 sec   (6171 perm/sec)   p_kst 5.166000e-01   p_cons 6.250000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000113/NEK2.2_1370_10000_0.5166_0.625_1.png
                gene_name: NEK2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
NEK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.129456e-01	ci left: 1.013965e-01	ci right 1.136332e-01	k: 1074	n:10000
Cons ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
KS ci ratio: 3.974662e-02	ci left: 4.831544e-01	ci right 5.028497e-01	k: 4930	n:10000
NEK6   10000 perm   1 sec   (6957 perm/sec)   p_kst 4.930000e-01   p_cons 7.170000e-02   p_joint 1.074000e-01

Joint ci ratio: 5.662465e-02	ci left: 1.877977e-01	ci right 1.987916e-01	k: 3865	n:20000
Cons ci ratio: 1.006450e-01	ci left: 6.694105e-02	ci right 7.408442e-02	k: 1409	n:20000
KS ci ratio: 2.814382e-02	ci left: 4.853978e-01	ci right 4.993044e-01	k: 9847	n:20000
NEK6   20000 perm   3 sec   (5935 perm/sec)   p_kst 4.923500e-01   p_cons 7.045000e-02   p_joint 1.932500e-01

Joint ci ratio: 6.337618e-02	ci left: 1.095041e-01	ci right 1.167043e-01	k: 3392	n:30000
Cons ci ratio: 8.240762e-02	ci left: 6.723595e-02	ci right 7.304763e-02	k: 2103	n:30000
KS ci ratio: 2.314216e-02	ci left: 4.831615e-01	ci right 4.945074e-01	k: 14665	n:30000
NEK6   30000 perm   5 sec   (5624 perm/sec)   p_kst 4.888333e-01   p_cons 7.010000e-02   p_joint 1.130667e-01

Outputting figure to mutsig2_images.part000000000113/NEK6.2_1163_30000_0.48883_0.0701_0.11307.png
                gene_name: NEK6
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 96 percent done.
NEK9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.180414e-02	ci left: 2.212878e-01	ci right 2.378700e-01	k: 2295	n:10000
Cons ci ratio: 6.764274e-02	ci left: 2.428218e-01	ci right 2.599232e-01	k: 2513	n:10000
KS ci ratio: 8.921899e-02	ci left: 1.545332e-01	ci right 1.690644e-01	k: 1617	n:10000
NEK9   10000 perm   2 sec   (5189 perm/sec)   p_kst 1.617000e-01   p_cons 2.513000e-01   p_joint 2.295000e-01

Outputting figure to mutsig2_images.part000000000113/NEK9.2_3028_10000_0.1617_0.2513_0.2295.png
                gene_name: NEK9
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 98 percent done.
NENF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.764585e-02	ci left: 3.069917e-01	ci right 3.253155e-01	k: 3161	n:10000
Cons ci ratio: 8.352371e-02	ci left: 1.729074e-01	ci right 1.880792e-01	k: 1804	n:10000
KS ci ratio: 2.651925e-02	ci left: 6.768003e-01	ci right 6.950913e-01	k: 6860	n:10000
NENF   10000 perm   1 sec   (7580 perm/sec)   p_kst 6.860000e-01   p_cons 1.804000e-01   p_joint 3.161000e-01

Outputting figure to mutsig2_images.part000000000113/NENF.2_535_10000_0.686_0.1804_0.3161.png
                gene_name: NENF
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000113
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 113 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1538>
Subject: Job 9894034: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1538>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000114> was used as the working directory.
Started at Sat Oct  6 00:21:08 2012
Results reported at Sat Oct  6 02:44:15 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000114.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000114.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 114  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000114.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   9186.84 sec.
    Max Memory :      3597 MB
    Max Swap   :      6042 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
114
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 114
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 114: processing genes 10188 - 10277
Calculating significance of each gene.
Using projection method.
In gene NEO1 the following bins exceed PROBCAP:
    COAD-AA-A00K	categ 6	N = 4368    n = 1	mu =   5.86e-07
10188	NEO1	7.514113e-01
10189	NES	6.925921e-01
10190	NET1	5.997810e-02
10191	NETO1	8.340310e-02
10192	NETO2	1.018720e-01
10193	NEU1	8.345491e-01
10194	NEU2	9.105238e-01
10195	NEU3	6.319389e-01
10196	NEU4	1
10197	NEURL	9.351050e-01
10198	NEURL2	7.483439e-01
10199	NEURL4	9.933951e-01
10200	NEUROD1	4.896695e-01
10201	NEUROD2	8.415429e-01
10202	NEUROD4	6.105735e-02
10203	NEUROD6	3.363492e-01
10204	NEUROG1	1
10205	NEUROG2	8.371713e-01
10206	NEUROG3	3.874253e-01
10207	NEXN	1.622654e-01
10208	NF1	7.821881e-01
10209	NF2	5.836213e-01
10210	NFAM1	4.340407e-01
10211	NFASC	1.506589e-02
10212	NFAT5	9.745249e-01
10213	NFATC1	9.966609e-01
10214	NFATC2	6.052881e-01
10215	NFATC2IP	4.013540e-01
10216	NFATC3	4.372930e-01
10217	NFATC4	5.722291e-01
10218	NFE2	1.835587e-01
10219	NFE2L1	5.547457e-01
10220	NFE2L2	7.764667e-01
10221	NFE2L3	4.858966e-01
In gene NFIA the following bins exceed PROBCAP:
    COAD-AA-3530	categ 6	N = 1506    n = 1	mu =   1.97e-07
10222	NFIA	7.005279e-03
10223	NFIB	3.083900e-02
10224	NFIC	3.870407e-01
10225	NFIL3	4.781672e-01
10226	NFIX	8.715898e-01
10227	NFKB1	6.691718e-01
10228	NFKB2	6.429674e-01
10229	NFKBIA	1
10230	NFKBIB	6.388281e-01
10231	NFKBID	7.961731e-01
10232	NFKBIE	2.312767e-01
10233	NFKBIL1	1
10234	NFKBIL2	1
10235	NFKBIZ	3.236429e-01
10236	NFRKB	9.989640e-01
10237	NFS1	6.100591e-01
10238	NFU1	6.404297e-01
10239	NFX1	2.615857e-01
10240	NFXL1	2.285597e-01
10241	NFYA	8.667904e-02
10242	NFYB	4.929600e-01
10243	NFYC	1.886215e-01
10244	NGB	3.317523e-03
10245	NGDN	7.565030e-01
10246	NGEF	9.382869e-01
10247	NGF	2.414531e-01
10248	NGFR	4.422749e-01
10249	NGFRAP1	1.934362e-01
10250	NGLY1	6.366357e-01
10251	NGRN	2.286742e-01
In gene NHEDC1 the following bins exceed PROBCAP:
    COAD-AA-3851	categ 6	N = 1692    n = 1	mu =   3.95e-07
10252	NHEDC1	3.113880e-01
10253	NHEDC2	1
10254	NHEJ1	9.608364e-02
10255	NHLH1	6.366582e-01
10256	NHLH2	1
10257	NHLRC1	7.505466e-01
10258	NHLRC2	7.397030e-01
10259	NHLRC3	2.209709e-01
10260	NHLRC4	1
10261	NHP2	1
10262	NHP2L1	1
10263	NHS	1.320146e-01
10264	NHSL2	4.347414e-01
10265	NICN1	1.505701e-01
10266	NID1	1.285060e-01
In gene NID2 the following bins exceed PROBCAP:
    COAD-AA-3854	categ 6	N = 4216    n = 1	mu =   2.96e-07
10267	NID2	9.292402e-02
10268	NIF3L1	6.770799e-01
10269	NIN	7.094621e-01
10270	NINJ1	2.157049e-01
10271	NINJ2	2.257092e-01
10272	NINL	5.649354e-01
10273	NIP7	1.783287e-01
10274	NIPA1	8.494001e-01
10275	NIPA2	1.167281e-02
10276	NIPAL1	5.598329e-01
10277	NIPAL2	2.160551e-01
Done

Running MutSig 2:
Scatter job 114: processing genes 10188 - 10277
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NFASC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.609581e-02	ci left: 1.642567e-01	ci right 1.791350e-01	k: 1716	n:10000
Cons ci ratio: 2.222750e-02	ci left: 7.481663e-01	ci right 7.650840e-01	k: 7567	n:10000
KS ci ratio: 1.351440e-01	ci left: 7.233299e-02	ci right 8.291462e-02	k: 775	n:10000
NFASC   10000 perm   3 sec   (3174 perm/sec)   p_kst 7.750000e-02   p_cons 7.567000e-01   p_joint 1.716000e-01

Joint ci ratio: 6.228641e-02	ci left: 1.601266e-01	ci right 1.704709e-01	k: 3305	n:20000
Cons ci ratio: 1.548678e-02	ci left: 7.561360e-01	ci right 7.679877e-01	k: 15242	n:20000
KS ci ratio: 9.129435e-02	ci left: 8.053403e-02	ci right 8.828730e-02	k: 1687	n:20000
NFASC   20000 perm   12 sec   (1644 perm/sec)   p_kst 8.435000e-02   p_cons 7.621000e-01   p_joint 1.652500e-01

Outputting figure to mutsig2_images.part000000000114/NFASC.17_4248_20000_0.08435_0.7621_0.16525.png
                gene_name: NFASC
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 2 percent done.
NHS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
KS ci ratio: 6.546793e-02	ci left: 2.551824e-01	ci right 2.725554e-01	k: 2638	n:10000
NHS   10000 perm   3 sec   (3781 perm/sec)   p_kst 2.638000e-01   p_cons 2.000000e-04   p_joint 0

Joint ci ratio: 2.984783e-01	ci left: 7.274556e-03	ci right 9.871356e-03	k: 170	n:20000
Cons ci ratio: 1.385617e+00	ci left: 1.407294e-04	ci right 7.210000e-04	k: 7	n:20000
KS ci ratio: 4.640063e-02	ci left: 2.568586e-01	ci right 2.691104e-01	k: 5259	n:20000
NHS   20000 perm   6 sec   (3422 perm/sec)   p_kst 2.629500e-01   p_cons 3.500000e-04   p_joint 8.500000e-03

Joint ci ratio: 3.225177e-01	ci left: 4.110775e-03	ci right 5.720741e-03	k: 146	n:30000
Cons ci ratio: 1.131361e+00	ci left: 1.830524e-04	ci right 6.559730e-04	k: 11	n:30000
KS ci ratio: 3.787302e-02	ci left: 2.581239e-01	ci right 2.681220e-01	k: 7893	n:30000
NHS   30000 perm   9 sec   (3295 perm/sec)   p_kst 2.631000e-01   p_cons 3.666667e-04   p_joint 4.866667e-03

Joint ci ratio: 3.618692e-01	ci left: 2.396900e-03	ci right 3.477268e-03	k: 116	n:40000
Cons ci ratio: 1.047468e+00	ci left: 1.730598e-04	ci right 5.556958e-04	k: 13	n:40000
KS ci ratio: 3.441380e-02	ci left: 2.406919e-01	ci right 2.491451e-01	k: 9796	n:40000
NHS   40000 perm   13 sec   (3174 perm/sec)   p_kst 2.449000e-01   p_cons 3.250000e-04   p_joint 2.900000e-03

Joint ci ratio: 3.446878e-01	ci left: 2.136179e-03	ci right 3.043112e-03	k: 128	n:50000
Cons ci ratio: 1.011978e+00	ci left: 1.530868e-04	ci right 4.697478e-04	k: 14	n:50000
KS ci ratio: 3.067493e-02	ci left: 2.424089e-01	ci right 2.499806e-01	k: 12309	n:50000
NHS   50000 perm   16 sec   (3118 perm/sec)   p_kst 2.461800e-01   p_cons 2.800000e-04   p_joint 2.560000e-03

Joint ci ratio: 3.859142e-01	ci left: 1.386353e-03	ci right 2.063309e-03	k: 102	n:60000
Cons ci ratio: 9.238066e-01	ci left: 1.650605e-04	ci right 4.536055e-04	k: 17	n:60000
KS ci ratio: 2.788956e-02	ci left: 2.442333e-01	ci right 2.511578e-01	k: 14861	n:60000
NHS   60000 perm   20 sec   (3072 perm/sec)   p_kst 2.476833e-01   p_cons 2.833333e-04   p_joint 1.700000e-03

Joint ci ratio: 3.878522e-01	ci left: 1.175380e-03	ci right 1.752930e-03	k: 101	n:70000
Cons ci ratio: 8.991812e-01	ci left: 1.524060e-04	ci right 4.063662e-04	k: 18	n:70000
KS ci ratio: 2.579305e-02	ci left: 2.448895e-01	ci right 2.513028e-01	k: 17366	n:70000
NHS   70000 perm   23 sec   (3027 perm/sec)   p_kst 2.480857e-01   p_cons 2.571429e-04   p_joint 1.442857e-03

Joint ci ratio: 4.084506e-01	ci left: 9.159399e-04	ci right 1.396417e-03	k: 91	n:80000
Cons ci ratio: 8.356267e-01	ci left: 1.624987e-04	ci right 4.012313e-04	k: 21	n:80000
KS ci ratio: 2.408362e-02	ci left: 2.457698e-01	ci right 2.517734e-01	k: 19901	n:80000
NHS   80000 perm   27 sec   (2917 perm/sec)   p_kst 2.487625e-01   p_cons 2.625000e-04   p_joint 1.137500e-03

Joint ci ratio: 2.100294e-01	ci left: 3.450648e-03	ci right 4.270729e-03	k: 346	n:90000
Cons ci ratio: 7.686599e-01	ci left: 1.797709e-04	ci right 4.100277e-04	k: 25	n:90000
KS ci ratio: 2.259660e-02	ci left: 2.477492e-01	ci right 2.534225e-01	k: 22552	n:90000
NHS   90000 perm   32 sec   (2841 perm/sec)   p_kst 2.505778e-01   p_cons 2.777778e-04   p_joint 3.844444e-03

Joint ci ratio: 2.042455e-01	ci left: 3.295182e-03	ci right 4.054054e-03	k: 366	n:100000
Cons ci ratio: 7.407029e-01	ci left: 1.779390e-04	ci right 3.928117e-04	k: 27	n:100000
KS ci ratio: 2.147126e-02	ci left: 2.472986e-01	ci right 2.526759e-01	k: 24998	n:100000
NHS   100000 perm   36 sec   (2788 perm/sec)   p_kst 2.499800e-01   p_cons 2.700000e-04   p_joint 3.660000e-03

Joint ci ratio: 1.913680e-01	ci left: 3.436339e-03	ci right 4.172022e-03	k: 417	n:110000
Cons ci ratio: 7.155900e-01	ci left: 1.765683e-04	ci right 3.786040e-04	k: 29	n:110000
KS ci ratio: 2.046704e-02	ci left: 2.475157e-01	ci right 2.526430e-01	k: 27508	n:110000
NHS   110000 perm   40 sec   (2759 perm/sec)   p_kst 2.500727e-01   p_cons 2.636364e-04   p_joint 3.790909e-03

Joint ci ratio: 1.946979e-01	ci left: 3.038887e-03	ci right 3.702139e-03	k: 403	n:120000
Cons ci ratio: 6.721764e-01	ci left: 1.893047e-04	ci right 3.861808e-04	k: 33	n:120000
KS ci ratio: 1.960346e-02	ci left: 2.474772e-01	ci right 2.523849e-01	k: 29991	n:120000
NHS   120000 perm   44 sec   (2736 perm/sec)   p_kst 2.499250e-01   p_cons 2.750000e-04   p_joint 3.358333e-03

Joint ci ratio: 2.035001e-01	ci left: 2.556553e-03	ci right 3.142895e-03	k: 369	n:130000
Cons ci ratio: 6.443498e-01	ci left: 1.939608e-04	ci right 3.833579e-04	k: 36	n:130000
KS ci ratio: 1.885929e-02	ci left: 2.470805e-01	ci right 2.517922e-01	k: 32426	n:130000
NHS   130000 perm   48 sec   (2714 perm/sec)   p_kst 2.494308e-01   p_cons 2.769231e-04   p_joint 2.838462e-03

Joint ci ratio: 3.861056e-01	ci left: 5.941008e-04	ci right 8.843671e-04	k: 102	n:140000
Cons ci ratio: 6.121093e-01	ci left: 2.041261e-04	ci right 3.890417e-04	k: 40	n:140000
KS ci ratio: 1.732080e-02	ci left: 2.655316e-01	ci right 2.701781e-01	k: 37499	n:140000
NHS   140000 perm   52 sec   (2687 perm/sec)   p_kst 2.678500e-01   p_cons 2.857143e-04   p_joint 7.285714e-04

Joint ci ratio: 3.770651e-01	ci left: 5.846296e-04	ci right 8.619262e-04	k: 107	n:150000
Cons ci ratio: 5.842695e-01	ci left: 2.131443e-04	ci right 3.937665e-04	k: 44	n:150000
KS ci ratio: 1.674076e-02	ci left: 2.654406e-01	ci right 2.699284e-01	k: 40152	n:150000
NHS   150000 perm   56 sec   (2658 perm/sec)   p_kst 2.676800e-01   p_cons 2.933333e-04   p_joint 7.133333e-04

Joint ci ratio: 2.295847e-01	ci left: 1.610033e-03	ci right 2.033346e-03	k: 290	n:160000
Cons ci ratio: 5.657166e-01	ci left: 2.158442e-04	ci right 3.906063e-04	k: 47	n:160000
KS ci ratio: 1.690365e-02	ci left: 2.494315e-01	ci right 2.536900e-01	k: 40249	n:160000
NHS   160000 perm   61 sec   (2632 perm/sec)   p_kst 2.515562e-01   p_cons 2.937500e-04   p_joint 1.812500e-03

Joint ci ratio: 2.472448e-01	ci left: 1.294040e-03	ci right 1.664472e-03	k: 250	n:170000
Cons ci ratio: 5.435214e-01	ci left: 2.233776e-04	ci right 3.944260e-04	k: 51	n:170000
KS ci ratio: 1.641424e-02	ci left: 2.491455e-01	ci right 2.532747e-01	k: 42705	n:170000
NHS   170000 perm   65 sec   (2606 perm/sec)   p_kst 2.512059e-01   p_cons 3.000000e-04   p_joint 1.470588e-03

Joint ci ratio: 2.388273e-01	ci left: 1.316062e-03	ci right 1.678076e-03	k: 268	n:180000
Cons ci ratio: 5.191330e-01	ci left: 2.350183e-04	ci right 4.039849e-04	k: 56	n:180000
KS ci ratio: 1.594615e-02	ci left: 2.493362e-01	ci right 2.533496e-01	k: 45241	n:180000
NHS   180000 perm   70 sec   (2570 perm/sec)   p_kst 2.513389e-01   p_cons 3.111111e-04   p_joint 1.488889e-03

Joint ci ratio: 2.379525e-01	ci left: 1.256689e-03	ci right 1.600917e-03	k: 270	n:190000
Cons ci ratio: 4.824336e-01	ci left: 2.640392e-04	ci right 4.360208e-04	k: 65	n:190000
KS ci ratio: 1.551855e-02	ci left: 2.494453e-01	ci right 2.533518e-01	k: 47765	n:190000
NHS   190000 perm   75 sec   (2534 perm/sec)   p_kst 2.513947e-01   p_cons 3.421053e-04   p_joint 1.421053e-03

Joint ci ratio: 2.392910e-01	ci left: 1.179745e-03	ci right 1.504984e-03	k: 267	n:200000
Cons ci ratio: 4.618921e-01	ci left: 2.772680e-04	ci right 4.477634e-04	k: 71	n:200000
KS ci ratio: 1.511317e-02	ci left: 2.498041e-01	ci right 2.536131e-01	k: 50341	n:200000
NHS   200000 perm   80 sec   (2512 perm/sec)   p_kst 2.517050e-01   p_cons 3.550000e-04   p_joint 1.335000e-03

Joint ci ratio: 2.392987e-01	ci left: 1.123563e-03	ci right 1.433324e-03	k: 267	n:210000
Cons ci ratio: 4.556094e-01	ci left: 2.724874e-04	ci right 4.370592e-04	k: 73	n:210000
KS ci ratio: 1.474151e-02	ci left: 2.500396e-01	ci right 2.537577e-01	k: 52898	n:210000
NHS   210000 perm   84 sec   (2490 perm/sec)   p_kst 2.518952e-01   p_cons 3.476190e-04   p_joint 1.271429e-03

Joint ci ratio: 2.316432e-01	ci left: 1.149486e-03	ci right 1.454806e-03	k: 285	n:220000
Cons ci ratio: 4.276244e-01	ci left: 3.005065e-04	ci right 4.676652e-04	k: 83	n:220000
KS ci ratio: 1.439823e-02	ci left: 2.501959e-01	ci right 2.538289e-01	k: 55442	n:220000
NHS   220000 perm   89 sec   (2465 perm/sec)   p_kst 2.520091e-01   p_cons 3.772727e-04   p_joint 1.295455e-03

Joint ci ratio: 2.316498e-01	ci left: 1.099505e-03	ci right 1.391558e-03	k: 285	n:230000
Cons ci ratio: 4.251042e-01	ci left: 2.913218e-04	ci right 4.521443e-04	k: 84	n:230000
KS ci ratio: 1.408876e-02	ci left: 2.500488e-01	ci right 2.536010e-01	k: 57919	n:230000
NHS   230000 perm   94 sec   (2436 perm/sec)   p_kst 2.518217e-01   p_cons 3.652174e-04   p_joint 1.239130e-03

Joint ci ratio: 2.284785e-01	ci left: 1.085104e-03	ci right 1.368829e-03	k: 293	n:240000
Cons ci ratio: 4.177959e-01	ci left: 2.903575e-04	ci right 4.471235e-04	k: 87	n:240000
KS ci ratio: 1.379338e-02	ci left: 2.500519e-01	ci right 2.535291e-01	k: 60429	n:240000
NHS   240000 perm   100 sec   (2411 perm/sec)   p_kst 2.517875e-01   p_cons 3.625000e-04   p_joint 1.220833e-03

Joint ci ratio: 2.250612e-01	ci left: 1.075654e-03	ci right 1.352118e-03	k: 302	n:250000
Cons ci ratio: 4.086122e-01	ci left: 2.930799e-04	ci right 4.468928e-04	k: 91	n:250000
KS ci ratio: 1.351440e-02	ci left: 2.500955e-01	ci right 2.535023e-01	k: 62949	n:250000
NHS   250000 perm   105 sec   (2387 perm/sec)   p_kst 2.517960e-01   p_cons 3.640000e-04   p_joint 1.208000e-03

Joint ci ratio: 2.320730e-01	ci left: 9.690087e-04	ci right 1.226936e-03	k: 284	n:260000
Cons ci ratio: 4.021093e-01	ci left: 2.921695e-04	ci right 4.424136e-04	k: 94	n:260000
KS ci ratio: 1.325548e-02	ci left: 2.500288e-01	ci right 2.533690e-01	k: 65441	n:260000
NHS   260000 perm   110 sec   (2363 perm/sec)   p_kst 2.516962e-01   p_cons 3.615385e-04   p_joint 1.092308e-03

Joint ci ratio: 2.284941e-01	ci left: 9.645297e-04	ci right 1.216747e-03	k: 293	n:270000
Cons ci ratio: 3.979435e-01	ci left: 2.880103e-04	ci right 4.341771e-04	k: 96	n:270000
KS ci ratio: 1.299517e-02	ci left: 2.504223e-01	ci right 2.537015e-01	k: 68056	n:270000
NHS   270000 perm   116 sec   (2337 perm/sec)   p_kst 2.520593e-01   p_cons 3.555556e-04   p_joint 1.085185e-03

Joint ci ratio: 2.261996e-01	ci left: 9.502896e-04	ci right 1.195940e-03	k: 299	n:280000
Cons ci ratio: 3.979460e-01	ci left: 2.777239e-04	ci right 4.186714e-04	k: 96	n:280000
KS ci ratio: 1.275431e-02	ci left: 2.506493e-01	ci right 2.538702e-01	k: 70632	n:280000
NHS   280000 perm   121 sec   (2311 perm/sec)   p_kst 2.522571e-01   p_cons 3.428571e-04   p_joint 1.067857e-03

Joint ci ratio: 2.312754e-01	ci left: 8.752577e-04	ci right 1.107315e-03	k: 286	n:290000
Cons ci ratio: 3.880689e-01	ci left: 2.836851e-04	ci right 4.231709e-04	k: 101	n:290000
KS ci ratio: 1.253656e-02	ci left: 2.505548e-01	ci right 2.537191e-01	k: 73119	n:290000
NHS   290000 perm   127 sec   (2289 perm/sec)   p_kst 2.521345e-01   p_cons 3.482759e-04   p_joint 9.862069e-04

Joint ci ratio: 2.281186e-01	ci left: 8.712145e-04	ci right 1.098603e-03	k: 294	n:300000
Cons ci ratio: 3.824852e-01	ci left: 2.832603e-04	ci right 4.200293e-04	k: 104	n:300000
KS ci ratio: 1.232284e-02	ci left: 2.506733e-01	ci right 2.537848e-01	k: 75668	n:300000
NHS   300000 perm   132 sec   (2267 perm/sec)   p_kst 2.522267e-01   p_cons 3.466667e-04   p_joint 9.800000e-04

Joint ci ratio: 2.296862e-01	ci left: 8.309454e-04	ci right 1.049525e-03	k: 290	n:310000
Cons ci ratio: 3.754013e-01	ci left: 2.857972e-04	ci right 4.206065e-04	k: 108	n:310000
KS ci ratio: 1.212892e-02	ci left: 2.504981e-01	ci right 2.535581e-01	k: 78128	n:310000
NHS   310000 perm   138 sec   (2248 perm/sec)   p_kst 2.520258e-01   p_cons 3.483871e-04   p_joint 9.354839e-04

Joint ci ratio: 2.367141e-01	ci left: 7.549527e-04	ci right 9.605100e-04	k: 273	n:320000
Cons ci ratio: 3.686969e-01	ci left: 2.881974e-04	ci right 4.211260e-04	k: 112	n:320000
KS ci ratio: 1.193486e-02	ci left: 2.506181e-01	ci right 2.536302e-01	k: 80679	n:320000
NHS   320000 perm   144 sec   (2228 perm/sec)   p_kst 2.521219e-01   p_cons 3.500000e-04   p_joint 8.531250e-04

Joint ci ratio: 2.333325e-01	ci left: 7.548904e-04	ci right 9.570709e-04	k: 281	n:330000
Cons ci ratio: 3.623393e-01	ci left: 2.904722e-04	ci right 4.215942e-04	k: 116	n:330000
KS ci ratio: 1.175597e-02	ci left: 2.505345e-01	ci right 2.535002e-01	k: 83165	n:330000
NHS   330000 perm   149 sec   (2210 perm/sec)   p_kst 2.520152e-01   p_cons 3.515152e-04   p_joint 8.515152e-04

Joint ci ratio: 2.316966e-01	ci left: 7.437667e-04	ci right 9.413713e-04	k: 285	n:340000
Cons ci ratio: 3.548359e-01	ci left: 2.953103e-04	ci right 4.252193e-04	k: 121	n:340000
KS ci ratio: 1.158073e-02	ci left: 2.505912e-01	ci right 2.535130e-01	k: 85697	n:340000
NHS   340000 perm   155 sec   (2190 perm/sec)   p_kst 2.520500e-01   p_cons 3.558824e-04   p_joint 8.382353e-04

Joint ci ratio: 2.262240e-01	ci left: 7.602230e-04	ci right 9.567640e-04	k: 299	n:350000
Cons ci ratio: 3.505523e-01	ci left: 2.946849e-04	ci right 4.223979e-04	k: 124	n:350000
KS ci ratio: 1.141172e-02	ci left: 2.506906e-01	ci right 2.535706e-01	k: 88245	n:350000
NHS   350000 perm   161 sec   (2172 perm/sec)   p_kst 2.521286e-01   p_cons 3.542857e-04   p_joint 8.542857e-04

Joint ci ratio: 2.225449e-01	ci left: 7.653226e-04	ci right 9.595234e-04	k: 309	n:360000
Cons ci ratio: 3.464202e-01	ci left: 2.941032e-04	ci right 4.197246e-04	k: 127	n:360000
KS ci ratio: 1.124650e-02	ci left: 2.508985e-01	ci right 2.537389e-01	k: 90834	n:360000
NHS   360000 perm   167 sec   (2154 perm/sec)   p_kst 2.523167e-01   p_cons 3.527778e-04   p_joint 8.583333e-04

Joint ci ratio: 2.193829e-01	ci left: 7.676164e-04	ci right 9.592586e-04	k: 318	n:370000
Cons ci ratio: 3.424309e-01	ci left: 2.935612e-04	ci right 4.171875e-04	k: 130	n:370000
KS ci ratio: 1.109365e-02	ci left: 2.509119e-01	ci right 2.537136e-01	k: 93355	n:370000
NHS   370000 perm   173 sec   (2138 perm/sec)   p_kst 2.523108e-01   p_cons 3.513514e-04   p_joint 8.594595e-04

Joint ci ratio: 2.200770e-01	ci left: 7.424414e-04	ci right 9.284641e-04	k: 316	n:380000
Cons ci ratio: 3.385763e-01	ci left: 2.930556e-04	ci right 4.147761e-04	k: 133	n:380000
KS ci ratio: 1.094359e-02	ci left: 2.510378e-01	ci right 2.538028e-01	k: 95919	n:380000
NHS   380000 perm   179 sec   (2120 perm/sec)   p_kst 2.524184e-01   p_cons 3.500000e-04   p_joint 8.315789e-04

Joint ci ratio: 2.176870e-01	ci left: 7.403691e-04	ci right 9.235886e-04	k: 323	n:390000
Cons ci ratio: 3.360782e-01	ci left: 2.902352e-04	ci right 4.097019e-04	k: 135	n:390000
KS ci ratio: 1.080276e-02	ci left: 2.510424e-01	ci right 2.537716e-01	k: 98438	n:390000
NHS   390000 perm   185 sec   (2103 perm/sec)   p_kst 2.524051e-01   p_cons 3.461538e-04   p_joint 8.282051e-04

Joint ci ratio: 1.532760e-01	ci left: 1.507359e-03	ci right 1.759948e-03	k: 652	n:400000
Cons ci ratio: 3.300650e-01	ci left: 2.944342e-04	ci right 4.130007e-04	k: 140	n:400000
KS ci ratio: 1.066631e-02	ci left: 2.510793e-01	ci right 2.537742e-01	k: 100970	n:400000
NHS   400000 perm   192 sec   (2086 perm/sec)   p_kst 2.524250e-01   p_cons 3.500000e-04   p_joint 1.630000e-03

Joint ci ratio: 1.570582e-01	ci left: 1.397914e-03	ci right 1.638487e-03	k: 621	n:410000
Cons ci ratio: 3.254803e-01	ci left: 2.962064e-04	ci right 4.134835e-04	k: 144	n:410000
KS ci ratio: 1.052899e-02	ci left: 2.513265e-01	ci right 2.539892e-01	k: 103589	n:410000
NHS   410000 perm   198 sec   (2070 perm/sec)   p_kst 2.526561e-01   p_cons 3.512195e-04   p_joint 1.514634e-03

Joint ci ratio: 1.551980e-01	ci left: 1.398949e-03	ci right 1.636584e-03	k: 636	n:420000
Cons ci ratio: 3.243647e-01	ci left: 2.913405e-04	ci right 4.062133e-04	k: 145	n:420000
KS ci ratio: 1.040660e-02	ci left: 2.512080e-01	ci right 2.538383e-01	k: 106059	n:420000
NHS   420000 perm   205 sec   (2052 perm/sec)   p_kst 2.525214e-01   p_cons 3.452381e-04   p_joint 1.514286e-03

Joint ci ratio: 1.534024e-01	ci left: 1.399952e-03	ci right 1.634754e-03	k: 651	n:430000
Cons ci ratio: 3.210829e-01	ci left: 2.909767e-04	ci right 4.043065e-04	k: 148	n:430000
KS ci ratio: 1.028838e-02	ci left: 2.510952e-01	ci right 2.536942e-01	k: 108529	n:430000
NHS   430000 perm   212 sec   (2031 perm/sec)   p_kst 2.523930e-01   p_cons 3.441860e-04   p_joint 1.513953e-03

Joint ci ratio: 1.516677e-01	ci left: 1.400925e-03	ci right 1.632991e-03	k: 666	n:440000
Cons ci ratio: 3.148062e-01	ci left: 2.969122e-04	ci right 4.098384e-04	k: 154	n:440000
KS ci ratio: 1.016675e-02	ci left: 2.512599e-01	ci right 2.538297e-01	k: 111119	n:440000
NHS   440000 perm   219 sec   (2013 perm/sec)   p_kst 2.525432e-01   p_cons 3.500000e-04   p_joint 1.513636e-03

Joint ci ratio: 1.495520e-01	ci left: 1.410425e-03	ci right 1.640514e-03	k: 685	n:450000
Cons ci ratio: 3.108210e-01	ci left: 2.985053e-04	ci right 4.103152e-04	k: 158	n:450000
KS ci ratio: 1.005632e-02	ci left: 2.511557e-01	ci right 2.536964e-01	k: 113591	n:450000
NHS   450000 perm   226 sec   (1994 perm/sec)   p_kst 2.524244e-01   p_cons 3.511111e-04   p_joint 1.522222e-03

Joint ci ratio: 1.178899e-01	ci left: 2.256434e-03	ci right 2.541195e-03	k: 1102	n:460000
Cons ci ratio: 3.079297e-01	ci left: 2.980316e-04	ci right 4.084218e-04	k: 161	n:460000
KS ci ratio: 9.945278e-03	ci left: 2.512125e-01	ci right 2.537254e-01	k: 116135	n:460000
NHS   460000 perm   233 sec   (1972 perm/sec)   p_kst 2.524674e-01   p_cons 3.500000e-04   p_joint 2.395652e-03

Joint ci ratio: 1.243286e-01	ci left: 1.979387e-03	ci right 2.243832e-03	k: 991	n:470000
Cons ci ratio: 3.023802e-01	ci left: 3.034793e-04	ci right 4.134721e-04	k: 167	n:470000
KS ci ratio: 9.843830e-03	ci left: 2.510375e-01	ci right 2.535230e-01	k: 118571	n:470000
NHS   470000 perm   240 sec   (1955 perm/sec)   p_kst 2.522787e-01   p_cons 3.553191e-04   p_joint 2.108511e-03

Joint ci ratio: 1.225492e-01	ci left: 1.996702e-03	ci right 2.259366e-03	k: 1020	n:480000
Cons ci ratio: 2.971203e-01	ci left: 3.087171e-04	ci right 4.182951e-04	k: 173	n:480000
KS ci ratio: 9.740740e-03	ci left: 2.510509e-01	ci right 2.535104e-01	k: 121094	n:480000
NHS   480000 perm   247 sec   (1940 perm/sec)   p_kst 2.522792e-01   p_cons 3.604167e-04   p_joint 2.125000e-03

Joint ci ratio: 1.326296e-01	ci left: 1.661542e-03	ci right 1.899513e-03	k: 871	n:490000
Cons ci ratio: 2.954277e-01	ci left: 3.061950e-04	ci right 4.141426e-04	k: 175	n:490000
KS ci ratio: 9.706507e-03	ci left: 2.485150e-01	ci right 2.509410e-01	k: 122366	n:490000
NHS   490000 perm   255 sec   (1919 perm/sec)   p_kst 2.497265e-01   p_cons 3.571429e-04   p_joint 1.777551e-03

Joint ci ratio: 1.327083e-01	ci left: 1.626375e-03	ci right 1.859459e-03	k: 870	n:500000
Cons ci ratio: 2.945928e-01	ci left: 3.019230e-04	ci right 4.080075e-04	k: 176	n:500000
KS ci ratio: 9.606608e-03	ci left: 2.486185e-01	ci right 2.510204e-01	k: 124909	n:500000
NHS   500000 perm   263 sec   (1901 perm/sec)   p_kst 2.498180e-01   p_cons 3.520000e-04   p_joint 1.740000e-03

Joint ci ratio: 1.308428e-01	ci left: 1.641890e-03	ci right 1.873633e-03	k: 895	n:510000
Cons ci ratio: 2.913193e-01	ci left: 3.032698e-04	ci right 4.084252e-04	k: 180	n:510000
KS ci ratio: 9.511919e-03	ci left: 2.486319e-01	ci right 2.510101e-01	k: 127408	n:510000
NHS   510000 perm   271 sec   (1884 perm/sec)   p_kst 2.498196e-01   p_cons 3.529412e-04   p_joint 1.754902e-03

Joint ci ratio: 1.318812e-01	ci left: 1.584274e-03	ci right 1.809798e-03	k: 881	n:520000
Cons ci ratio: 2.873767e-01	ci left: 3.063554e-04	ci right 4.108820e-04	k: 185	n:520000
KS ci ratio: 9.419928e-03	ci left: 2.486469e-01	ci right 2.510021e-01	k: 129908	n:520000
NHS   520000 perm   278 sec   (1870 perm/sec)   p_kst 2.498231e-01   p_cons 3.557692e-04   p_joint 1.694231e-03

Joint ci ratio: 1.312144e-01	ci left: 1.570804e-03	ci right 1.793191e-03	k: 890	n:530000
Cons ci ratio: 2.850869e-01	ci left: 3.058292e-04	ci right 4.091952e-04	k: 188	n:530000
KS ci ratio: 9.331824e-03	ci left: 2.486105e-01	ci right 2.509432e-01	k: 132381	n:530000
NHS   530000 perm   286 sec   (1856 perm/sec)   p_kst 2.497755e-01   p_cons 3.547170e-04   p_joint 1.679245e-03

Joint ci ratio: 1.302680e-01	ci left: 1.565001e-03	ci right 1.784845e-03	k: 903	n:540000
Cons ci ratio: 2.813888e-01	ci left: 3.087674e-04	ci right 4.115326e-04	k: 193	n:540000
KS ci ratio: 9.247243e-03	ci left: 2.485312e-01	ci right 2.508419e-01	k: 134830	n:540000
NHS   540000 perm   293 sec   (1842 perm/sec)   p_kst 2.496852e-01   p_cons 3.574074e-04   p_joint 1.672222e-03

Joint ci ratio: 1.296252e-01	ci left: 1.552377e-03	ci right 1.769290e-03	k: 912	n:550000
Cons ci ratio: 2.799499e-01	ci left: 3.065338e-04	ci right 4.079419e-04	k: 195	n:550000
KS ci ratio: 9.164031e-03	ci left: 2.484911e-01	ci right 2.507806e-01	k: 137299	n:550000
NHS   550000 perm   301 sec   (1828 perm/sec)   p_kst 2.496345e-01   p_cons 3.545455e-04   p_joint 1.658182e-03

Joint ci ratio: 1.288520e-01	ci left: 1.543664e-03	ci right 1.757973e-03	k: 923	n:560000
Cons ci ratio: 2.771361e-01	ci left: 3.077040e-04	ci right 4.082977e-04	k: 199	n:560000
KS ci ratio: 9.078957e-03	ci left: 2.486202e-01	ci right 2.508895e-01	k: 139862	n:560000
NHS   560000 perm   309 sec   (1814 perm/sec)   p_kst 2.497536e-01   p_cons 3.553571e-04   p_joint 1.648214e-03

Joint ci ratio: 1.358840e-01	ci left: 1.358814e-03	ci right 1.558589e-03	k: 830	n:570000
Cons ci ratio: 2.730697e-01	ci left: 3.121061e-04	ci right 4.123850e-04	k: 205	n:570000
KS ci ratio: 8.589464e-03	ci left: 2.664615e-01	ci right 2.687619e-01	k: 152538	n:570000
NHS   570000 perm   317 sec   (1799 perm/sec)   p_kst 2.676105e-01   p_cons 3.596491e-04   p_joint 1.456140e-03

Joint ci ratio: 1.346739e-01	ci left: 1.360373e-03	ci right 1.558453e-03	k: 845	n:580000
Cons ci ratio: 2.691773e-01	ci left: 3.163668e-04	ci right 4.163210e-04	k: 211	n:580000
KS ci ratio: 8.516972e-03	ci left: 2.663852e-01	ci right 2.686654e-01	k: 155164	n:580000
NHS   580000 perm   325 sec   (1784 perm/sec)   p_kst 2.675241e-01   p_cons 3.637931e-04   p_joint 1.456897e-03

Joint ci ratio: 1.345960e-01	ci left: 1.338953e-03	ci right 1.533792e-03	k: 846	n:590000
Cons ci ratio: 2.654466e-01	ci left: 3.204928e-04	ci right 4.201140e-04	k: 217	n:590000
KS ci ratio: 8.444094e-03	ci left: 2.664131e-01	ci right 2.686739e-01	k: 157850	n:590000
NHS   590000 perm   333 sec   (1769 perm/sec)   p_kst 2.675424e-01   p_cons 3.677966e-04   p_joint 1.433898e-03

Joint ci ratio: 1.331107e-01	ci left: 1.347244e-03	ci right 1.540955e-03	k: 865	n:600000
Cons ci ratio: 2.618669e-01	ci left: 3.244905e-04	ci right 4.237713e-04	k: 223	n:600000
KS ci ratio: 8.374978e-03	ci left: 2.663503e-01	ci right 2.685920e-01	k: 160482	n:600000
NHS   600000 perm   342 sec   (1757 perm/sec)   p_kst 2.674700e-01   p_cons 3.716667e-04   p_joint 1.441667e-03

Joint ci ratio: 1.319726e-01	ci left: 1.348933e-03	ci right 1.541098e-03	k: 880	n:610000
Cons ci ratio: 2.589921e-01	ci left: 3.268327e-04	ci right 4.255548e-04	k: 228	n:610000
KS ci ratio: 8.305446e-03	ci left: 2.663878e-01	ci right 2.686111e-01	k: 163174	n:610000
NHS   610000 perm   350 sec   (1745 perm/sec)   p_kst 2.674984e-01   p_cons 3.737705e-04   p_joint 1.442623e-03

Joint ci ratio: 1.311568e-01	ci left: 1.344333e-03	ci right 1.534568e-03	k: 891	n:620000
Cons ci ratio: 2.556639e-01	ci left: 3.306146e-04	ci right 4.289911e-04	k: 234	n:620000
KS ci ratio: 8.237279e-03	ci left: 2.664403e-01	ci right 2.686457e-01	k: 165876	n:620000
NHS   620000 perm   358 sec   (1733 perm/sec)   p_kst 2.675419e-01   p_cons 3.774194e-04   p_joint 1.437097e-03

Joint ci ratio: 1.299243e-01	ci left: 1.349098e-03	ci right 1.538074e-03	k: 908	n:630000
Cons ci ratio: 2.545833e-01	ci left: 3.283383e-04	ci right 4.255589e-04	k: 236	n:630000
KS ci ratio: 8.171161e-03	ci left: 2.664722e-01	ci right 2.686601e-01	k: 168566	n:630000
NHS   630000 perm   367 sec   (1719 perm/sec)   p_kst 2.675651e-01   p_cons 3.746032e-04   p_joint 1.441270e-03

Joint ci ratio: 1.289352e-01	ci left: 1.349185e-03	ci right 1.536624e-03	k: 922	n:640000
Cons ci ratio: 2.529873e-01	ci left: 3.275974e-04	ci right 4.238946e-04	k: 239	n:640000
KS ci ratio: 8.106060e-03	ci left: 2.665297e-01	ci right 2.687005e-01	k: 171273	n:640000
NHS   640000 perm   375 sec   (1706 perm/sec)   p_kst 2.676141e-01   p_cons 3.734375e-04   p_joint 1.440625e-03

Joint ci ratio: 1.281054e-01	ci left: 1.346296e-03	ci right 1.532039e-03	k: 934	n:650000
Cons ci ratio: 2.509050e-01	ci left: 3.283227e-04	ci right 4.239148e-04	k: 243	n:650000
KS ci ratio: 8.041890e-03	ci left: 2.666147e-01	ci right 2.687689e-01	k: 173999	n:650000
NHS   650000 perm   384 sec   (1692 perm/sec)   p_kst 2.676908e-01   p_cons 3.738462e-04   p_joint 1.436923e-03

Joint ci ratio: 1.269562e-01	ci left: 1.350834e-03	ci right 1.535405e-03	k: 951	n:660000
Cons ci ratio: 2.488733e-01	ci left: 3.290292e-04	ci right 4.239311e-04	k: 247	n:660000
KS ci ratio: 7.977988e-03	ci left: 2.667577e-01	ci right 2.688959e-01	k: 176765	n:660000
NHS   660000 perm   393 sec   (1680 perm/sec)   p_kst 2.678258e-01   p_cons 3.742424e-04   p_joint 1.440909e-03

Joint ci ratio: 1.295026e-01	ci left: 1.277216e-03	ci right 1.455498e-03	k: 914	n:670000
Cons ci ratio: 2.464016e-01	ci left: 3.311180e-04	ci right 4.255286e-04	k: 252	n:670000
KS ci ratio: 7.919350e-03	ci left: 2.667101e-01	ci right 2.688322e-01	k: 179406	n:670000
NHS   670000 perm   402 sec   (1668 perm/sec)   p_kst 2.677701e-01   p_cons 3.761194e-04   p_joint 1.364179e-03

Joint ci ratio: 1.285924e-01	ci left: 1.276934e-03	ci right 1.453828e-03	k: 927	n:680000
Cons ci ratio: 2.449537e-01	ci left: 3.303888e-04	ci right 4.239537e-04	k: 255	n:680000
KS ci ratio: 7.861161e-03	ci left: 2.667052e-01	ci right 2.688115e-01	k: 182075	n:680000
NHS   680000 perm   411 sec   (1655 perm/sec)   p_kst 2.677574e-01   p_cons 3.750000e-04   p_joint 1.363235e-03

Joint ci ratio: 1.095514e-01	ci left: 1.750684e-03	ci right 1.954984e-03	k: 1277	n:690000
Cons ci ratio: 2.421323e-01	ci left: 3.337656e-04	ci right 4.270346e-04	k: 261	n:690000
KS ci ratio: 7.806342e-03	ci left: 2.665948e-01	ci right 2.686855e-01	k: 184671	n:690000
NHS   690000 perm   420 sec   (1644 perm/sec)   p_kst 2.676391e-01   p_cons 3.782609e-04   p_joint 1.850725e-03

Joint ci ratio: 1.140193e-01	ci left: 1.589579e-03	ci right 1.783153e-03	k: 1179	n:700000
Cons ci ratio: 2.394061e-01	ci left: 3.370520e-04	ci right 4.300215e-04	k: 267	n:700000
KS ci ratio: 7.748050e-03	ci left: 2.667201e-01	ci right 2.687961e-01	k: 187430	n:700000
NHS   700000 perm   429 sec   (1631 perm/sec)   p_kst 2.677571e-01   p_cons 3.814286e-04   p_joint 1.684286e-03

Joint ci ratio: 1.130177e-01	ci left: 1.595929e-03	ci right 1.788455e-03	k: 1200	n:710000
Cons ci ratio: 2.376392e-01	ci left: 3.376019e-04	ci right 4.299347e-04	k: 271	n:710000
KS ci ratio: 7.692729e-03	ci left: 2.667562e-01	ci right 2.688176e-01	k: 190128	n:710000
NHS   710000 perm   438 sec   (1621 perm/sec)   p_kst 2.677859e-01   p_cons 3.816901e-04   p_joint 1.690141e-03

Joint ci ratio: 1.129249e-01	ci left: 1.576462e-03	ci right 1.766473e-03	k: 1202	n:720000
Cons ci ratio: 2.363396e-01	ci left: 3.368323e-04	ci right 4.283771e-04	k: 274	n:720000
KS ci ratio: 7.639225e-03	ci left: 2.667580e-01	ci right 2.688050e-01	k: 192802	n:720000
NHS   720000 perm   447 sec   (1609 perm/sec)   p_kst 2.677806e-01   p_cons 3.805556e-04   p_joint 1.669444e-03

Joint ci ratio: 1.120894e-01	ci left: 1.578830e-03	ci right 1.767625e-03	k: 1220	n:730000
Cons ci ratio: 2.325638e-01	ci left: 3.438230e-04	ci right 4.355603e-04	k: 283	n:730000
KS ci ratio: 7.586425e-03	ci left: 2.667803e-01	ci right 2.688133e-01	k: 195491	n:730000
NHS   730000 perm   457 sec   (1599 perm/sec)   p_kst 2.677959e-01   p_cons 3.876712e-04   p_joint 1.671233e-03

Joint ci ratio: 1.112271e-01	ci left: 1.582453e-03	ci right 1.770131e-03	k: 1239	n:740000
Cons ci ratio: 2.305430e-01	ci left: 3.455416e-04	ci right 4.368223e-04	k: 288	n:740000
KS ci ratio: 7.535562e-03	ci left: 2.667576e-01	ci right 2.687767e-01	k: 198147	n:740000
NHS   740000 perm   466 sec   (1588 perm/sec)   p_kst 2.677662e-01   p_cons 3.891892e-04   p_joint 1.674324e-03

Joint ci ratio: 1.105165e-01	ci left: 1.582096e-03	ci right 1.768454e-03	k: 1255	n:750000
Cons ci ratio: 2.293558e-01	ci left: 3.447039e-04	ci right 4.352280e-04	k: 291	n:750000
KS ci ratio: 7.485809e-03	ci left: 2.667302e-01	ci right 2.687356e-01	k: 200799	n:750000
NHS   750000 perm   475 sec   (1578 perm/sec)   p_kst 2.677320e-01   p_cons 3.880000e-04   p_joint 1.673333e-03

Joint ci ratio: 1.002143e-01	ci left: 1.908498e-03	ci right 2.111117e-03	k: 1526	n:760000
Cons ci ratio: 2.262765e-01	ci left: 3.500941e-04	ci right 4.406272e-04	k: 299	n:760000
KS ci ratio: 7.435707e-03	ci left: 2.667731e-01	ci right 2.687655e-01	k: 203504	n:760000
NHS   760000 perm   485 sec   (1568 perm/sec)   p_kst 2.677684e-01   p_cons 3.934211e-04   p_joint 2.007895e-03

Joint ci ratio: 9.979084e-02	ci left: 1.900173e-03	ci right 2.101006e-03	k: 1539	n:770000
Cons ci ratio: 2.236815e-01	ci left: 3.541261e-04	ci right 4.445070e-04	k: 306	n:770000
KS ci ratio: 7.388017e-03	ci left: 2.667398e-01	ci right 2.687191e-01	k: 206151	n:770000
NHS   770000 perm   494 sec   (1558 perm/sec)   p_kst 2.677286e-01   p_cons 3.974026e-04   p_joint 1.998701e-03

Joint ci ratio: 9.934070e-02	ci left: 1.893313e-03	ci right 2.092466e-03	k: 1553	n:780000
Cons ci ratio: 2.225966e-01	ci left: 3.532172e-04	ci right 4.428690e-04	k: 309	n:780000
KS ci ratio: 7.341472e-03	ci left: 2.666946e-01	ci right 2.686610e-01	k: 208788	n:780000
NHS   780000 perm   504 sec   (1549 perm/sec)   p_kst 2.676769e-01   p_cons 3.961538e-04   p_joint 1.991026e-03

Joint ci ratio: 1.006816e-01	ci left: 1.818743e-03	ci right 2.012786e-03	k: 1512	n:790000
Cons ci ratio: 2.211743e-01	ci left: 3.535280e-04	ci right 4.426073e-04	k: 313	n:790000
KS ci ratio: 7.294454e-03	ci left: 2.667226e-01	ci right 2.686766e-01	k: 211482	n:790000
NHS   790000 perm   513 sec   (1539 perm/sec)   p_kst 2.676987e-01   p_cons 3.962025e-04   p_joint 1.913924e-03

Joint ci ratio: 1.002193e-01	ci left: 1.813069e-03	ci right 2.005566e-03	k: 1526	n:800000
Cons ci ratio: 2.204735e-01	ci left: 3.514706e-04	ci right 4.397128e-04	k: 315	n:800000
KS ci ratio: 7.247657e-03	ci left: 2.667862e-01	ci right 2.687280e-01	k: 214205	n:800000
NHS   800000 perm   523 sec   (1530 perm/sec)   p_kst 2.677562e-01   p_cons 3.937500e-04   p_joint 1.907500e-03

Joint ci ratio: 9.982826e-02	ci left: 1.805129e-03	ci right 1.995992e-03	k: 1538	n:810000
Cons ci ratio: 2.180710e-01	ci left: 3.552989e-04	ci right 4.434000e-04	k: 322	n:810000
KS ci ratio: 7.204244e-03	ci left: 2.667126e-01	ci right 2.686422e-01	k: 216818	n:810000
NHS   810000 perm   533 sec   (1520 perm/sec)   p_kst 2.676765e-01   p_cons 3.975309e-04   p_joint 1.898765e-03

Joint ci ratio: 9.989448e-02	ci left: 1.780736e-03	ci right 1.969152e-03	k: 1536	n:820000
Cons ci ratio: 2.164024e-01	ci left: 3.567318e-04	ci right 4.444215e-04	k: 327	n:820000
KS ci ratio: 7.162649e-03	ci left: 2.665835e-01	ci right 2.685010e-01	k: 219384	n:820000
NHS   820000 perm   543 sec   (1511 perm/sec)   p_kst 2.675415e-01   p_cons 3.987805e-04   p_joint 1.873171e-03

Joint ci ratio: 9.925074e-02	ci left: 1.782778e-03	ci right 1.970124e-03	k: 1556	n:830000
Cons ci ratio: 2.150948e-01	ci left: 3.569928e-04	ci right 4.441463e-04	k: 331	n:830000
KS ci ratio: 7.116207e-03	ci left: 2.667633e-01	ci right 2.686696e-01	k: 222204	n:830000
NHS   830000 perm   553 sec   (1502 perm/sec)   p_kst 2.677157e-01   p_cons 3.987952e-04   p_joint 1.874699e-03

Joint ci ratio: 9.855670e-02	ci left: 1.787097e-03	ci right 1.973508e-03	k: 1578	n:840000
Cons ci ratio: 2.134930e-01	ci left: 3.583758e-04	ci right 4.451301e-04	k: 336	n:840000
KS ci ratio: 7.073253e-03	ci left: 2.667950e-01	ci right 2.686899e-01	k: 224903	n:840000
NHS   840000 perm   563 sec   (1492 perm/sec)   p_kst 2.677417e-01   p_cons 4.000000e-04   p_joint 1.878571e-03

Joint ci ratio: 7.930927e-02	ci left: 2.752194e-03	ci right 2.980626e-03	k: 2435	n:850000
Cons ci ratio: 2.122372e-01	ci left: 3.586147e-04	ci right 4.448497e-04	k: 340	n:850000
KS ci ratio: 7.032207e-03	ci left: 2.667625e-01	ci right 2.686462e-01	k: 227548	n:850000
NHS   850000 perm   573 sec   (1483 perm/sec)   p_kst 2.677035e-01   p_cons 4.000000e-04   p_joint 2.864706e-03

Joint ci ratio: 7.908303e-02	ci left: 2.736148e-03	ci right 2.962570e-03	k: 2449	n:860000
Cons ci ratio: 2.116178e-01	ci left: 3.566468e-04	ci right 4.421259e-04	k: 342	n:860000
KS ci ratio: 6.988882e-03	ci left: 2.668980e-01	ci right 2.687710e-01	k: 230337	n:860000
NHS   860000 perm   583 sec   (1474 perm/sec)   p_kst 2.678337e-01   p_cons 3.976744e-04   p_joint 2.847674e-03

Joint ci ratio: 7.924667e-02	ci left: 2.693429e-03	ci right 2.916798e-03	k: 2439	n:870000
Cons ci ratio: 2.097906e-01	ci left: 3.590801e-04	ci right 4.443038e-04	k: 348	n:870000
KS ci ratio: 6.947121e-03	ci left: 2.669868e-01	ci right 2.688492e-01	k: 233088	n:870000
NHS   870000 perm   594 sec   (1465 perm/sec)   p_kst 2.679172e-01   p_cons 4.000000e-04   p_joint 2.803448e-03

Joint ci ratio: 8.004131e-02	ci left: 2.609358e-03	ci right 2.828026e-03	k: 2391	n:880000
Cons ci ratio: 2.085986e-01	ci left: 3.593070e-04	ci right 4.440382e-04	k: 352	n:880000
KS ci ratio: 6.907600e-03	ci left: 2.669885e-01	ci right 2.688403e-01	k: 235764	n:880000
NHS   880000 perm   604 sec   (1456 perm/sec)   p_kst 2.679136e-01   p_cons 4.000000e-04   p_joint 2.717045e-03

Joint ci ratio: 7.956040e-02	ci left: 2.611974e-03	ci right 2.829485e-03	k: 2420	n:890000
Cons ci ratio: 2.080104e-01	ci left: 3.573998e-04	ci right 4.414133e-04	k: 354	n:890000
KS ci ratio: 6.870831e-03	ci left: 2.668712e-01	ci right 2.687123e-01	k: 238334	n:890000
NHS   890000 perm   615 sec   (1447 perm/sec)   p_kst 2.677910e-01   p_cons 3.977528e-04   p_joint 2.719101e-03

Joint ci ratio: 7.976005e-02	ci left: 2.569882e-03	ci right 2.784450e-03	k: 2408	n:900000
Cons ci ratio: 2.077184e-01	ci left: 3.544819e-04	ci right 4.376776e-04	k: 355	n:900000
KS ci ratio: 6.832320e-03	ci left: 2.668898e-01	ci right 2.687206e-01	k: 241024	n:900000
NHS   900000 perm   626 sec   (1438 perm/sec)   p_kst 2.678044e-01   p_cons 3.944444e-04   p_joint 2.675556e-03

Joint ci ratio: 7.934946e-02	ci left: 2.568567e-03	ci right 2.781871e-03	k: 2433	n:910000
Cons ci ratio: 2.065612e-01	ci left: 3.547541e-04	ci right 4.374913e-04	k: 359	n:910000
KS ci ratio: 6.795000e-03	ci left: 2.668761e-01	ci right 2.686968e-01	k: 243685	n:910000
NHS   910000 perm   637 sec   (1429 perm/sec)   p_kst 2.677857e-01   p_cons 3.945055e-04   p_joint 2.673626e-03

Joint ci ratio: 7.894514e-02	ci left: 2.567284e-03	ci right 2.779345e-03	k: 2458	n:920000
Cons ci ratio: 2.051414e-01	ci left: 3.560528e-04	ci right 4.384504e-04	k: 364	n:920000
KS ci ratio: 6.757069e-03	ci left: 2.669333e-01	ci right 2.687442e-01	k: 246411	n:920000
NHS   920000 perm   648 sec   (1420 perm/sec)   p_kst 2.678380e-01   p_cons 3.956522e-04   p_joint 2.671739e-03

Joint ci ratio: 7.865815e-02	ci left: 2.558652e-03	ci right 2.769196e-03	k: 2476	n:930000
Cons ci ratio: 2.037504e-01	ci left: 3.573254e-04	ci right 4.393871e-04	k: 369	n:930000
KS ci ratio: 6.720907e-03	ci left: 2.669228e-01	ci right 2.687238e-01	k: 249075	n:930000
NHS   930000 perm   659 sec   (1411 perm/sec)   p_kst 2.678226e-01   p_cons 3.967742e-04   p_joint 2.662366e-03

Joint ci ratio: 8.067624e-02	ci left: 2.404222e-03	ci right 2.607373e-03	k: 2354	n:940000
Cons ci ratio: 2.023874e-01	ci left: 3.585728e-04	ci right 4.403020e-04	k: 374	n:940000
KS ci ratio: 6.684106e-03	ci left: 2.669837e-01	ci right 2.687752e-01	k: 251806	n:940000
NHS   940000 perm   670 sec   (1403 perm/sec)   p_kst 2.678787e-01   p_cons 3.978723e-04   p_joint 2.504255e-03

Joint ci ratio: 8.095346e-02	ci left: 2.362411e-03	ci right 2.562747e-03	k: 2338	n:950000
Cons ci ratio: 2.018501e-01	ci left: 3.567970e-04	ci right 4.378789e-04	k: 376	n:950000
KS ci ratio: 6.649044e-03	ci left: 2.669760e-01	ci right 2.687581e-01	k: 254473	n:950000
NHS   950000 perm   681 sec   (1395 perm/sec)   p_kst 2.678663e-01   p_cons 3.957895e-04   p_joint 2.461053e-03

Joint ci ratio: 8.234240e-02	ci left: 2.258206e-03	ci right 2.453149e-03	k: 2260	n:960000
Cons ci ratio: 2.000015e-01	ci left: 3.600053e-04	ci right 4.409756e-04	k: 383	n:960000
KS ci ratio: 6.615775e-03	ci left: 2.668946e-01	ci right 2.686672e-01	k: 257069	n:960000
NHS   960000 perm   692 sec   (1387 perm/sec)   p_kst 2.677802e-01   p_cons 3.989583e-04   p_joint 2.354167e-03

Joint ci ratio: 8.276643e-02	ci left: 2.211702e-03	ci right 2.403660e-03	k: 2237	n:970000
Cons ci ratio: 1.992249e-01	ci left: 3.592321e-04	ci right 4.396767e-04	k: 386	n:970000
KS ci ratio: 6.581097e-03	ci left: 2.669282e-01	ci right 2.686917e-01	k: 259775	n:970000
NHS   970000 perm   703 sec   (1379 perm/sec)   p_kst 2.678093e-01   p_cons 3.979381e-04   p_joint 2.306186e-03

Joint ci ratio: 7.551893e-02	ci left: 2.638269e-03	ci right 2.846320e-03	k: 2686	n:980000
Cons ci ratio: 1.974469e-01	ci left: 3.623547e-04	ci right 4.426872e-04	k: 393	n:980000
KS ci ratio: 6.547061e-03	ci left: 2.669551e-01	ci right 2.687096e-01	k: 262475	n:980000
NHS   980000 perm   715 sec   (1371 perm/sec)   p_kst 2.678316e-01   p_cons 4.010204e-04   p_joint 2.740816e-03

Joint ci ratio: 7.546367e-02	ci left: 2.615583e-03	ci right 2.821687e-03	k: 2690	n:990000
Cons ci ratio: 1.962058e-01	ci left: 3.634962e-04	ci right 4.435147e-04	k: 398	n:990000
KS ci ratio: 6.513296e-03	ci left: 2.669965e-01	ci right 2.687422e-01	k: 265190	n:990000
NHS   990000 perm   726 sec   (1364 perm/sec)   p_kst 2.678687e-01   p_cons 4.020202e-04   p_joint 2.717172e-03

Joint ci ratio: 7.559156e-02	ci left: 2.580595e-03	ci right 2.784302e-03	k: 2681	n:1000000
Cons ci ratio: 1.957161e-01	ci left: 3.617630e-04	ci right 4.411776e-04	k: 400	n:1000000
KS ci ratio: 6.480659e-03	ci left: 2.670002e-01	ci right 2.687371e-01	k: 267868	n:1000000
NHS   1000000 perm   737 sec   (1356 perm/sec)   p_kst 2.678680e-01   p_cons 4.000000e-04   p_joint 2.681000e-03

Joint ci ratio: 7.751424e-02	ci left: 2.427817e-03	ci right 2.624558e-03	k: 2550	n:1010000
Cons ci ratio: 1.947472e-01	ci left: 3.619480e-04	ci right 4.409632e-04	k: 404	n:1010000
KS ci ratio: 6.448166e-03	ci left: 2.670246e-01	ci right 2.687530e-01	k: 270567	n:1010000
NHS   1010000 perm   749 sec   (1349 perm/sec)   p_kst 2.678881e-01   p_cons 4.000000e-04   p_joint 2.524752e-03

Joint ci ratio: 7.742397e-02	ci left: 2.409782e-03	ci right 2.604825e-03	k: 2556	n:1020000
Cons ci ratio: 1.926183e-01	ci left: 3.667953e-04	ci right 4.458908e-04	k: 413	n:1020000
KS ci ratio: 6.416895e-03	ci left: 2.670035e-01	ci right 2.687233e-01	k: 273220	n:1020000
NHS   1020000 perm   760 sec   (1342 perm/sec)   p_kst 2.678627e-01   p_cons 4.049020e-04   p_joint 2.505882e-03

Joint ci ratio: 7.701834e-02	ci left: 2.412094e-03	ci right 2.606255e-03	k: 2583	n:1030000
Cons ci ratio: 1.912373e-01	ci left: 3.687796e-04	ci right 4.476665e-04	k: 419	n:1030000
KS ci ratio: 6.385648e-03	ci left: 2.670090e-01	ci right 2.687204e-01	k: 275900	n:1030000
NHS   1030000 perm   772 sec   (1334 perm/sec)   p_kst 2.678641e-01   p_cons 4.067961e-04   p_joint 2.507767e-03

Joint ci ratio: 7.682578e-02	ci left: 2.401160e-03	ci right 2.593935e-03	k: 2596	n:1040000
Cons ci ratio: 1.910103e-01	ci left: 3.661491e-04	ci right 4.443696e-04	k: 420	n:1040000
KS ci ratio: 6.354136e-03	ci left: 2.670586e-01	ci right 2.687619e-01	k: 278626	n:1040000
NHS   1040000 perm   784 sec   (1326 perm/sec)   p_kst 2.679096e-01   p_cons 4.038462e-04   p_joint 2.496154e-03

Joint ci ratio: 7.690094e-02	ci left: 2.373620e-03	ci right 2.564379e-03	k: 2591	n:1050000
Cons ci ratio: 1.901094e-01	ci left: 3.662898e-04	ci right 4.441285e-04	k: 424	n:1050000
KS ci ratio: 6.323070e-03	ci left: 2.671083e-01	ci right 2.688035e-01	k: 281353	n:1050000
NHS   1050000 perm   796 sec   (1319 perm/sec)   p_kst 2.679552e-01   p_cons 4.038095e-04   p_joint 2.467619e-03

Joint ci ratio: 7.641574e-02	ci left: 2.381763e-03	ci right 2.571915e-03	k: 2624	n:1060000
Cons ci ratio: 1.896638e-01	ci left: 3.646313e-04	ci right 4.419150e-04	k: 426	n:1060000
KS ci ratio: 6.292199e-03	ci left: 2.671730e-01	ci right 2.688603e-01	k: 284097	n:1060000
NHS   1060000 perm   808 sec   (1312 perm/sec)   p_kst 2.680160e-01   p_cons 4.018868e-04   p_joint 2.475472e-03

Joint ci ratio: 7.608321e-02	ci left: 2.380589e-03	ci right 2.569784e-03	k: 2647	n:1070000
Cons ci ratio: 1.887816e-01	ci left: 3.647847e-04	ci right 4.417002e-04	k: 430	n:1070000
KS ci ratio: 6.263431e-03	ci left: 2.671329e-01	ci right 2.688123e-01	k: 286730	n:1070000
NHS   1070000 perm   820 sec   (1304 perm/sec)   p_kst 2.679720e-01   p_cons 4.018692e-04   p_joint 2.473832e-03

Joint ci ratio: 7.615619e-02	ci left: 2.354004e-03	ci right 2.541273e-03	k: 2642	n:1080000
Cons ci ratio: 1.876960e-01	ci left: 3.658186e-04	ci right 4.424579e-04	k: 435	n:1080000
KS ci ratio: 6.234200e-03	ci left: 2.671473e-01	ci right 2.688188e-01	k: 289421	n:1080000
NHS   1080000 perm   832 sec   (1297 perm/sec)   p_kst 2.679824e-01   p_cons 4.027778e-04   p_joint 2.446296e-03

Joint ci ratio: 7.643294e-02	ci left: 2.315307e-03	ci right 2.500197e-03	k: 2623	n:1090000
Cons ci ratio: 1.874814e-01	ci left: 3.633368e-04	ci right 4.393592e-04	k: 436	n:1090000
KS ci ratio: 6.205230e-03	ci left: 2.671705e-01	ci right 2.688344e-01	k: 292122	n:1090000
NHS   1090000 perm   844 sec   (1291 perm/sec)   p_kst 2.680018e-01   p_cons 4.000000e-04   p_joint 2.406422e-03

Joint ci ratio: 7.625919e-02	ci left: 2.304959e-03	ci right 2.488586e-03	k: 2635	n:1100000
Cons ci ratio: 1.868412e-01	ci left: 3.626332e-04	ci right 4.382199e-04	k: 439	n:1100000
KS ci ratio: 6.177203e-03	ci left: 2.671588e-01	ci right 2.688151e-01	k: 294785	n:1100000
NHS   1100000 perm   857 sec   (1284 perm/sec)   p_kst 2.679864e-01   p_cons 3.990909e-04   p_joint 2.395455e-03

Joint ci ratio: 7.591438e-02	ci left: 2.305404e-03	ci right 2.488199e-03	k: 2659	n:1110000
Cons ci ratio: 1.859977e-01	ci left: 3.628016e-04	ci right 4.380436e-04	k: 443	n:1110000
KS ci ratio: 6.148876e-03	ci left: 2.671906e-01	ci right 2.688394e-01	k: 297496	n:1110000
NHS   1110000 perm   869 sec   (1277 perm/sec)   p_kst 2.680144e-01   p_cons 3.990991e-04   p_joint 2.395495e-03

Joint ci ratio: 7.634797e-02	ci left: 2.258542e-03	ci right 2.438690e-03	k: 2629	n:1120000
Cons ci ratio: 1.849591e-01	ci left: 3.638194e-04	ci right 4.388038e-04	k: 448	n:1120000
KS ci ratio: 6.120781e-03	ci left: 2.672316e-01	ci right 2.688732e-01	k: 300218	n:1120000
NHS   1120000 perm   882 sec   (1270 perm/sec)   p_kst 2.680518e-01   p_cons 4.000000e-04   p_joint 2.347321e-03

Joint ci ratio: 8.226594e-02	ci left: 1.922796e-03	ci right 2.088622e-03	k: 2265	n:1130000
Cons ci ratio: 1.847537e-01	ci left: 3.614437e-04	ci right 4.358465e-04	k: 449	n:1130000
KS ci ratio: 6.093782e-03	ci left: 2.672259e-01	ci right 2.688602e-01	k: 302888	n:1130000
NHS   1130000 perm   894 sec   (1264 perm/sec)   p_kst 2.680425e-01   p_cons 3.973451e-04   p_joint 2.004425e-03

Joint ci ratio: 8.190528e-02	ci left: 1.923114e-03	ci right 2.088205e-03	k: 2285	n:1140000
Cons ci ratio: 1.843447e-01	ci left: 3.599464e-04	ci right 4.338587e-04	k: 451	n:1140000
KS ci ratio: 6.066487e-03	ci left: 2.672625e-01	ci right 2.688896e-01	k: 305606	n:1140000
NHS   1140000 perm   907 sec   (1257 perm/sec)   p_kst 2.680754e-01   p_cons 3.956140e-04   p_joint 2.004386e-03

Joint ci ratio: 8.279995e-02	ci left: 1.864657e-03	ci right 2.026563e-03	k: 2236	n:1150000
Cons ci ratio: 1.829333e-01	ci left: 3.626237e-04	ci right 4.364524e-04	k: 458	n:1150000
KS ci ratio: 6.040117e-03	ci left: 2.672619e-01	ci right 2.688819e-01	k: 308282	n:1150000
NHS   1150000 perm   920 sec   (1251 perm/sec)   p_kst 2.680713e-01   p_cons 3.982609e-04   p_joint 1.944348e-03

Joint ci ratio: 8.267115e-02	ci left: 1.854492e-03	ci right 2.015253e-03	k: 2243	n:1160000
Cons ci ratio: 1.823385e-01	ci left: 3.619656e-04	ci right 4.353942e-04	k: 461	n:1160000
KS ci ratio: 6.013573e-03	ci left: 2.672949e-01	ci right 2.689080e-01	k: 310997	n:1160000
NHS   1160000 perm   932 sec   (1244 perm/sec)   p_kst 2.681009e-01   p_cons 3.974138e-04   p_joint 1.933621e-03

Joint ci ratio: 8.230516e-02	ci left: 1.855383e-03	ci right 2.015475e-03	k: 2263	n:1170000
Cons ci ratio: 1.815542e-01	ci left: 3.621349e-04	ci right 4.352472e-04	k: 465	n:1170000
KS ci ratio: 5.987571e-03	ci left: 2.673146e-01	ci right 2.689208e-01	k: 313697	n:1170000
NHS   1170000 perm   945 sec   (1238 perm/sec)   p_kst 2.681171e-01   p_cons 3.974359e-04   p_joint 1.934188e-03

Joint ci ratio: 8.194399e-02	ci left: 1.856260e-03	ci right 2.015692e-03	k: 2283	n:1180000
Cons ci ratio: 1.811661e-01	ci left: 3.606840e-04	ci right 4.333305e-04	k: 467	n:1180000
KS ci ratio: 5.962741e-03	ci left: 2.672789e-01	ci right 2.688782e-01	k: 316332	n:1180000
NHS   1180000 perm   959 sec   (1231 perm/sec)   p_kst 2.680780e-01   p_cons 3.957627e-04   p_joint 1.934746e-03

Joint ci ratio: 8.199863e-02	ci left: 1.838192e-03	ci right 1.996181e-03	k: 2280	n:1190000
Cons ci ratio: 1.800156e-01	ci left: 3.624671e-04	ci right 4.349587e-04	k: 473	n:1190000
KS ci ratio: 5.937314e-03	ci left: 2.673034e-01	ci right 2.688960e-01	k: 319038	n:1190000
NHS   1190000 perm   972 sec   (1224 perm/sec)   p_kst 2.680992e-01   p_cons 3.974790e-04   p_joint 1.915966e-03

Joint ci ratio: 8.171266e-02	ci left: 1.835934e-03	ci right 1.993153e-03	k: 2296	n:1200000
Cons ci ratio: 1.790735e-01	ci left: 3.634260e-04	ci right 4.356877e-04	k: 478	n:1200000
KS ci ratio: 5.911720e-03	ci left: 2.673600e-01	ci right 2.689461e-01	k: 321783	n:1200000
NHS   1200000 perm   986 sec   (1217 perm/sec)   p_kst 2.681525e-01   p_cons 3.983333e-04   p_joint 1.913333e-03

Joint ci ratio: 8.155339e-02	ci left: 1.828047e-03	ci right 1.984270e-03	k: 2305	n:1210000
Cons ci ratio: 1.783305e-01	ci left: 3.635804e-04	ci right 4.355405e-04	k: 482	n:1210000
KS ci ratio: 5.886739e-03	ci left: 2.673967e-01	ci right 2.689763e-01	k: 324505	n:1210000
NHS   1210000 perm   999 sec   (1211 perm/sec)   p_kst 2.681860e-01   p_cons 3.983471e-04   p_joint 1.904959e-03

Joint ci ratio: 7.707828e-02	ci left: 2.034013e-03	ci right 2.197873e-03	k: 2580	n:1220000
Cons ci ratio: 1.775966e-01	ci left: 3.637329e-04	ci right 4.353951e-04	k: 486	n:1220000
KS ci ratio: 5.968782e-03	ci left: 2.604174e-01	ci right 2.619772e-01	k: 318660	n:1220000
NHS   1220000 perm   1012 sec   (1205 perm/sec)   p_kst 2.611967e-01   p_cons 3.983607e-04   p_joint 2.114754e-03

Joint ci ratio: 7.672231e-02	ci left: 2.036614e-03	ci right 2.199891e-03	k: 2604	n:1230000
Cons ci ratio: 1.766918e-01	ci left: 3.646605e-04	ci right 4.361004e-04	k: 491	n:1230000
KS ci ratio: 5.944043e-03	ci left: 2.604482e-01	ci right 2.620017e-01	k: 321306	n:1230000
NHS   1230000 perm   1025 sec   (1200 perm/sec)   p_kst 2.612244e-01   p_cons 3.991870e-04   p_joint 2.117073e-03

Joint ci ratio: 7.641492e-02	ci left: 2.036800e-03	ci right 2.199410e-03	k: 2625	n:1240000
Cons ci ratio: 1.761557e-01	ci left: 3.640322e-04	ci right 4.351095e-04	k: 494	n:1240000
KS ci ratio: 5.920772e-03	ci left: 2.604028e-01	ci right 2.619499e-01	k: 323858	n:1240000
NHS   1240000 perm   1039 sec   (1194 perm/sec)   p_kst 2.611758e-01   p_cons 3.983871e-04   p_joint 2.116935e-03

Joint ci ratio: 7.298607e-02	ci left: 2.218350e-03	ci right 2.387170e-03	k: 2877	n:1250000
Cons ci ratio: 1.752726e-01	ci left: 3.649441e-04	ci right 4.358044e-04	k: 499	n:1250000
KS ci ratio: 5.896073e-03	ci left: 2.604692e-01	ci right 2.620103e-01	k: 326549	n:1250000
NHS   1250000 perm   1053 sec   (1188 perm/sec)   p_kst 2.612392e-01   p_cons 3.992000e-04   p_joint 2.301600e-03

Joint ci ratio: 7.272129e-02	ci left: 2.217107e-03	ci right 2.385194e-03	k: 2898	n:1260000
Cons ci ratio: 1.744027e-01	ci left: 3.658423e-04	ci right 4.364873e-04	k: 504	n:1260000
KS ci ratio: 5.871837e-03	ci left: 2.605243e-01	ci right 2.620593e-01	k: 329227	n:1260000
NHS   1260000 perm   1066 sec   (1182 perm/sec)   p_kst 2.612913e-01   p_cons 4.000000e-04   p_joint 2.300000e-03

Joint ci ratio: 7.237249e-02	ci left: 2.221297e-03	ci right 2.388860e-03	k: 2926	n:1270000
Cons ci ratio: 1.733756e-01	ci left: 3.674805e-04	ci right 4.379802e-04	k: 510	n:1270000
KS ci ratio: 5.849604e-03	ci left: 2.604660e-01	ci right 2.619949e-01	k: 331762	n:1270000
NHS   1270000 perm   1080 sec   (1176 perm/sec)   p_kst 2.612299e-01   p_cons 4.015748e-04   p_joint 2.303937e-03

Joint ci ratio: 7.212657e-02	ci left: 2.219285e-03	ci right 2.386105e-03	k: 2946	n:1280000
Cons ci ratio: 1.727010e-01	ci left: 3.675992e-04	ci right 4.378187e-04	k: 514	n:1280000
KS ci ratio: 5.827055e-03	ci left: 2.604462e-01	ci right 2.619690e-01	k: 334345	n:1280000
NHS   1280000 perm   1094 sec   (1170 perm/sec)   p_kst 2.612070e-01   p_cons 4.015625e-04   p_joint 2.301562e-03

Joint ci ratio: 7.185888e-02	ci left: 2.218829e-03	ci right 2.384969e-03	k: 2968	n:1290000
Cons ci ratio: 1.722003e-01	ci left: 3.669748e-04	ci right 4.368506e-04	k: 517	n:1290000
KS ci ratio: 5.803738e-03	ci left: 2.604948e-01	ci right 2.620117e-01	k: 337016	n:1290000
NHS   1290000 perm   1108 sec   (1164 perm/sec)   p_kst 2.612527e-01   p_cons 4.007752e-04   p_joint 2.300775e-03

Joint ci ratio: 7.153424e-02	ci left: 2.222158e-03	ci right 2.387764e-03	k: 2995	n:1300000
Cons ci ratio: 1.715392e-01	ci left: 3.670965e-04	ci right 4.366994e-04	k: 521	n:1300000
KS ci ratio: 5.781379e-03	ci left: 2.604973e-01	ci right 2.620084e-01	k: 339628	n:1300000
NHS   1300000 perm   1122 sec   (1159 perm/sec)   p_kst 2.612523e-01   p_cons 4.007692e-04   p_joint 2.303846e-03

Joint ci ratio: 7.166686e-02	ci left: 2.196947e-03	ci right 2.360991e-03	k: 2984	n:1310000
Cons ci ratio: 1.707235e-01	ci left: 3.679475e-04	ci right 4.373459e-04	k: 526	n:1310000
KS ci ratio: 5.759391e-03	ci left: 2.604921e-01	ci right 2.619975e-01	k: 342230	n:1310000
NHS   1310000 perm   1136 sec   (1153 perm/sec)   p_kst 2.612443e-01   p_cons 4.015267e-04   p_joint 2.277863e-03

Joint ci ratio: 7.135668e-02	ci left: 2.199649e-03	ci right 2.363154e-03	k: 3010	n:1320000
Cons ci ratio: 1.699192e-01	ci left: 3.687865e-04	ci right 4.379819e-04	k: 531	n:1320000
KS ci ratio: 5.737257e-03	ci left: 2.605136e-01	ci right 2.620132e-01	k: 344867	n:1320000
NHS   1320000 perm   1150 sec   (1148 perm/sec)   p_kst 2.612629e-01   p_cons 4.022727e-04   p_joint 2.280303e-03

Joint ci ratio: 7.116803e-02	ci left: 2.194925e-03	ci right 2.357630e-03	k: 3026	n:1330000
Cons ci ratio: 1.692840e-01	ci left: 3.688935e-04	ci right 4.378238e-04	k: 535	n:1330000
KS ci ratio: 5.715889e-03	ci left: 2.605001e-01	ci right 2.619941e-01	k: 347458	n:1330000
NHS   1330000 perm   1164 sec   (1142 perm/sec)   p_kst 2.612466e-01   p_cons 4.022556e-04   p_joint 2.275188e-03

Joint ci ratio: 7.085262e-02	ci left: 2.198337e-03	ci right 2.360543e-03	k: 3053	n:1340000
Cons ci ratio: 1.683443e-01	ci left: 3.704290e-04	ci right 4.392231e-04	k: 541	n:1340000
KS ci ratio: 5.694141e-03	ci left: 2.605287e-01	ci right 2.620171e-01	k: 350105	n:1340000
NHS   1340000 perm   1179 sec   (1137 perm/sec)   p_kst 2.612724e-01   p_cons 4.037313e-04   p_joint 2.278358e-03

Joint ci ratio: 7.064487e-02	ci left: 2.195150e-03	ci right 2.356627e-03	k: 3071	n:1350000
Cons ci ratio: 1.680347e-01	ci left: 3.691042e-04	ci right 4.375134e-04	k: 543	n:1350000
KS ci ratio: 5.673140e-03	ci left: 2.605228e-01	ci right 2.620057e-01	k: 352706	n:1350000
NHS   1350000 perm   1193 sec   (1131 perm/sec)   p_kst 2.612637e-01   p_cons 4.022222e-04   p_joint 2.274815e-03

Joint ci ratio: 7.033634e-02	ci left: 2.198513e-03	ci right 2.359501e-03	k: 3098	n:1360000
Cons ci ratio: 1.671155e-01	ci left: 3.706170e-04	ci right 4.388930e-04	k: 549	n:1360000
KS ci ratio: 5.652940e-03	ci left: 2.604780e-01	ci right 2.619554e-01	k: 355254	n:1360000
NHS   1360000 perm   1208 sec   (1126 perm/sec)   p_kst 2.612162e-01   p_cons 4.036765e-04   p_joint 2.277941e-03

Joint ci ratio: 7.037107e-02	ci left: 2.180313e-03	ci right 2.340051e-03	k: 3095	n:1370000
Cons ci ratio: 1.665111e-01	ci left: 3.707096e-04	ci right 4.387308e-04	k: 553	n:1370000
KS ci ratio: 5.632603e-03	ci left: 2.604580e-01	ci right 2.619299e-01	k: 357835	n:1370000
NHS   1370000 perm   1222 sec   (1121 perm/sec)   p_kst 2.611934e-01   p_cons 4.036496e-04   p_joint 2.259124e-03

Joint ci ratio: 7.049728e-02	ci left: 2.156682e-03	ci right 2.314984e-03	k: 3084	n:1380000
Cons ci ratio: 1.659132e-01	ci left: 3.708012e-04	ci right 4.385706e-04	k: 557	n:1380000
KS ci ratio: 5.612442e-03	ci left: 2.604412e-01	ci right 2.619077e-01	k: 360420	n:1380000
NHS   1380000 perm   1237 sec   (1116 perm/sec)   p_kst 2.611739e-01   p_cons 4.036232e-04   p_joint 2.234783e-03

Joint ci ratio: 7.050930e-02	ci left: 2.140459e-03	ci right 2.297598e-03	k: 3083	n:1390000
Cons ci ratio: 1.653217e-01	ci left: 3.708920e-04	ci right 4.384123e-04	k: 561	n:1390000
KS ci ratio: 5.592611e-03	ci left: 2.604167e-01	ci right 2.618779e-01	k: 362994	n:1390000
NHS   1390000 perm   1251 sec   (1111 perm/sec)   p_kst 2.611468e-01   p_cons 4.035971e-04   p_joint 2.217986e-03

Joint ci ratio: 7.025915e-02	ci left: 2.140608e-03	ci right 2.297177e-03	k: 3105	n:1400000
Cons ci ratio: 1.645911e-01	ci left: 3.716668e-04	ci right 4.389995e-04	k: 566	n:1400000
KS ci ratio: 5.572441e-03	ci left: 2.604304e-01	ci right 2.618863e-01	k: 365621	n:1400000
NHS   1400000 perm   1266 sec   (1106 perm/sec)   p_kst 2.611579e-01   p_cons 4.042857e-04   p_joint 2.217857e-03

Joint ci ratio: 6.998922e-02	ci left: 2.142149e-03	ci right 2.298205e-03	k: 3129	n:1410000
Cons ci ratio: 1.637270e-01	ci left: 3.731114e-04	ci right 4.403160e-04	k: 572	n:1410000
KS ci ratio: 5.551723e-03	ci left: 2.604970e-01	ci right 2.619479e-01	k: 368323	n:1410000
NHS   1410000 perm   1281 sec   (1101 perm/sec)   p_kst 2.612220e-01   p_cons 4.056738e-04   p_joint 2.219149e-03

Joint ci ratio: 6.977784e-02	ci left: 2.140210e-03	ci right 2.295634e-03	k: 3148	n:1420000
Cons ci ratio: 1.630173e-01	ci left: 3.738610e-04	ci right 4.408801e-04	k: 577	n:1420000
KS ci ratio: 5.532142e-03	ci left: 2.604994e-01	ci right 2.619452e-01	k: 370935	n:1420000
NHS   1420000 perm   1297 sec   (1095 perm/sec)   p_kst 2.612218e-01   p_cons 4.063380e-04   p_joint 2.216901e-03

Joint ci ratio: 6.955735e-02	ci left: 2.138986e-03	ci right 2.293811e-03	k: 3168	n:1430000
Cons ci ratio: 1.623167e-01	ci left: 3.746008e-04	ci right 4.414358e-04	k: 582	n:1430000
KS ci ratio: 5.511619e-03	ci left: 2.605821e-01	ci right 2.620230e-01	k: 373662	n:1430000
NHS   1430000 perm   1312 sec   (1090 perm/sec)   p_kst 2.613021e-01   p_cons 4.069930e-04   p_joint 2.215385e-03

Joint ci ratio: 6.928453e-02	ci left: 2.141191e-03	ci right 2.295544e-03	k: 3193	n:1440000
Cons ci ratio: 1.614877e-01	ci left: 3.759973e-04	ci right 4.427055e-04	k: 588	n:1440000
KS ci ratio: 5.492340e-03	ci left: 2.605923e-01	ci right 2.620281e-01	k: 376286	n:1440000
NHS   1440000 perm   1327 sec   (1085 perm/sec)   p_kst 2.613097e-01   p_cons 4.083333e-04   p_joint 2.217361e-03

Joint ci ratio: 6.903639e-02	ci left: 2.142012e-03	ci right 2.295849e-03	k: 3216	n:1450000
Cons ci ratio: 1.612143e-01	ci left: 3.747278e-04	ci right 4.410874e-04	k: 590	n:1450000
KS ci ratio: 5.472919e-03	ci left: 2.606264e-01	ci right 2.620573e-01	k: 378945	n:1450000
NHS   1450000 perm   1343 sec   (1080 perm/sec)   p_kst 2.613414e-01   p_cons 4.068966e-04   p_joint 2.217931e-03

Joint ci ratio: 6.902617e-02	ci left: 2.128014e-03	ci right 2.280821e-03	k: 3217	n:1460000
Cons ci ratio: 1.606715e-01	ci left: 3.747906e-04	ci right 4.409162e-04	k: 594	n:1460000
KS ci ratio: 5.453481e-03	ci left: 2.606758e-01	ci right 2.621019e-01	k: 381627	n:1460000
NHS   1460000 perm   1359 sec   (1075 perm/sec)   p_kst 2.613884e-01   p_cons 4.068493e-04   p_joint 2.203425e-03

Joint ci ratio: 6.878078e-02	ci left: 2.128914e-03	ci right 2.281221e-03	k: 3240	n:1470000
Cons ci ratio: 1.605368e-01	ci left: 3.728939e-04	ci right 4.386244e-04	k: 595	n:1470000
KS ci ratio: 5.434707e-03	ci left: 2.606919e-01	ci right 2.621132e-01	k: 384261	n:1470000
NHS   1470000 perm   1374 sec   (1070 perm/sec)   p_kst 2.614020e-01   p_cons 4.047619e-04   p_joint 2.204082e-03

Joint ci ratio: 6.851696e-02	ci left: 2.131132e-03	ci right 2.282989e-03	k: 3265	n:1480000
Cons ci ratio: 1.600008e-01	ci left: 3.729686e-04	ci right 4.384717e-04	k: 599	n:1480000
KS ci ratio: 5.415984e-03	ci left: 2.607179e-01	ci right 2.621344e-01	k: 386910	n:1480000
NHS   1480000 perm   1390 sec   (1064 perm/sec)   p_kst 2.614257e-01   p_cons 4.047297e-04   p_joint 2.206081e-03

Joint ci ratio: 6.848596e-02	ci left: 2.118807e-03	ci right 2.269715e-03	k: 3268	n:1490000
Cons ci ratio: 1.594702e-01	ci left: 3.730427e-04	ci right 4.383208e-04	k: 603	n:1490000
KS ci ratio: 5.398016e-03	ci left: 2.607033e-01	ci right 2.621151e-01	k: 389499	n:1490000
NHS   1490000 perm   1407 sec   (1059 perm/sec)   p_kst 2.614087e-01   p_cons 4.046980e-04   p_joint 2.193289e-03

Joint ci ratio: 6.862334e-02	ci left: 2.096163e-03	ci right 2.245770e-03	k: 3255	n:1500000
Cons ci ratio: 1.589447e-01	ci left: 3.731162e-04	ci right 4.381714e-04	k: 607	n:1500000
KS ci ratio: 5.380607e-03	ci left: 2.606617e-01	ci right 2.620686e-01	k: 392047	n:1500000
NHS   1500000 perm   1423 sec   (1054 perm/sec)   p_kst 2.613647e-01   p_cons 4.046667e-04   p_joint 2.170000e-03

Joint ci ratio: 6.843452e-02	ci left: 2.093997e-03	ci right 2.243022e-03	k: 3273	n:1510000
Cons ci ratio: 1.588143e-01	ci left: 3.712811e-04	ci right 4.359582e-04	k: 608	n:1510000
KS ci ratio: 5.362638e-03	ci left: 2.606728e-01	ci right 2.620751e-01	k: 394674	n:1510000
NHS   1510000 perm   1439 sec   (1050 perm/sec)   p_kst 2.613735e-01   p_cons 4.026490e-04   p_joint 2.167550e-03

Joint ci ratio: 7.225034e-02	ci left: 1.863045e-03	ci right 2.003337e-03	k: 2937	n:1520000
Cons ci ratio: 1.534861e-01	ci left: 3.960233e-04	ci right 4.624833e-04	k: 651	n:1520000
KS ci ratio: 5.345066e-03	ci left: 2.606681e-01	ci right 2.620657e-01	k: 397277	n:1520000
NHS   1520000 perm   1454 sec   (1045 perm/sec)   p_kst 2.613664e-01   p_cons 4.282895e-04   p_joint 1.932237e-03

Joint ci ratio: 7.204227e-02	ci left: 1.861779e-03	ci right 2.001555e-03	k: 2954	n:1530000
Cons ci ratio: 1.530174e-01	ci left: 3.959490e-04	ci right 4.621751e-04	k: 655	n:1530000
KS ci ratio: 5.327756e-03	ci left: 2.606569e-01	ci right 2.620499e-01	k: 399870	n:1530000
NHS   1530000 perm   1470 sec   (1041 perm/sec)   p_kst 2.613529e-01   p_cons 4.281046e-04   p_joint 1.930719e-03

Joint ci ratio: 7.176344e-02	ci left: 1.864356e-03	ci right 2.003761e-03	k: 2977	n:1540000
Cons ci ratio: 1.517501e-01	ci left: 4.002485e-04	ci right 4.665889e-04	k: 666	n:1540000
KS ci ratio: 5.310346e-03	ci left: 2.606653e-01	ci right 2.620538e-01	k: 402493	n:1540000
NHS   1540000 perm   1486 sec   (1037 perm/sec)   p_kst 2.613591e-01   p_cons 4.324675e-04   p_joint 1.933117e-03

Joint ci ratio: 7.157151e-02	ci left: 1.862466e-03	ci right 2.001341e-03	k: 2993	n:1550000
Cons ci ratio: 1.511845e-01	ci left: 4.007698e-04	ci right 4.669266e-04	k: 671	n:1550000
KS ci ratio: 5.293317e-03	ci left: 2.606581e-01	ci right 2.620421e-01	k: 405092	n:1550000
NHS   1550000 perm   1501 sec   (1032 perm/sec)   p_kst 2.613497e-01   p_cons 4.329032e-04   p_joint 1.930968e-03

Joint ci ratio: 7.133364e-02	ci left: 1.863118e-03	ci right 2.001562e-03	k: 3013	n:1560000
Cons ci ratio: 1.505139e-01	ci left: 4.019018e-04	ci right 4.679246e-04	k: 677	n:1560000
KS ci ratio: 5.276696e-03	ci left: 2.606331e-01	ci right 2.620126e-01	k: 407663	n:1560000
NHS   1560000 perm   1518 sec   (1028 perm/sec)   p_kst 2.613224e-01   p_cons 4.339744e-04   p_joint 1.931410e-03

Joint ci ratio: 7.110986e-02	ci left: 1.863138e-03	ci right 2.001130e-03	k: 3032	n:1570000
Cons ci ratio: 1.500719e-01	ci left: 4.017939e-04	ci right 4.675877e-04	k: 681	n:1570000
KS ci ratio: 5.259589e-03	ci left: 2.606555e-01	ci right 2.620307e-01	k: 410308	n:1570000
NHS   1570000 perm   1534 sec   (1023 perm/sec)   p_kst 2.613427e-01   p_cons 4.337580e-04   p_joint 1.931210e-03

Joint ci ratio: 7.099313e-02	ci left: 1.857562e-03	ci right 1.994907e-03	k: 3042	n:1580000
Cons ci ratio: 1.494160e-01	ci left: 4.029061e-04	ci right 4.685680e-04	k: 687	n:1580000
KS ci ratio: 5.243146e-03	ci left: 2.606410e-01	ci right 2.620118e-01	k: 412895	n:1580000
NHS   1580000 perm   1550 sec   (1019 perm/sec)   p_kst 2.613259e-01   p_cons 4.348101e-04   p_joint 1.925316e-03

Joint ci ratio: 7.076096e-02	ci left: 1.858235e-03	ci right 1.995162e-03	k: 3062	n:1590000
Cons ci ratio: 1.488760e-01	ci left: 4.033994e-04	ci right 4.688829e-04	k: 692	n:1590000
KS ci ratio: 5.226540e-03	ci left: 2.606499e-01	ci right 2.620164e-01	k: 415519	n:1590000
NHS   1590000 perm   1567 sec   (1015 perm/sec)   p_kst 2.613327e-01   p_cons 4.352201e-04   p_joint 1.925786e-03

Joint ci ratio: 7.053105e-02	ci left: 1.858900e-03	ci right 1.995413e-03	k: 3082	n:1600000
Cons ci ratio: 1.480239e-01	ci left: 4.056924e-04	ci right 4.711379e-04	k: 700	n:1600000
KS ci ratio: 5.210758e-03	ci left: 2.606094e-01	ci right 2.619715e-01	k: 418064	n:1600000
NHS   1600000 perm   1583 sec   (1011 perm/sec)   p_kst 2.612900e-01   p_cons 4.375000e-04   p_joint 1.926250e-03

Joint ci ratio: 7.066940e-02	ci left: 1.840032e-03	ci right 1.975434e-03	k: 3070	n:1610000
Cons ci ratio: 1.476034e-01	ci left: 4.055652e-04	ci right 4.707879e-04	k: 704	n:1610000
KS ci ratio: 5.194541e-03	ci left: 2.606122e-01	ci right 2.619701e-01	k: 420678	n:1610000
NHS   1610000 perm   1600 sec   (1006 perm/sec)   p_kst 2.612907e-01   p_cons 4.372671e-04   p_joint 1.906832e-03

Joint ci ratio: 7.056630e-02	ci left: 1.834131e-03	ci right 1.968894e-03	k: 3079	n:1620000
Cons ci ratio: 1.472904e-01	ci left: 4.048452e-04	ci right 4.698019e-04	k: 707	n:1620000
KS ci ratio: 5.179328e-03	ci left: 2.605514e-01	ci right 2.619050e-01	k: 423189	n:1620000
NHS   1620000 perm   1617 sec   (1002 perm/sec)   p_kst 2.612278e-01   p_cons 4.364198e-04   p_joint 1.900617e-03

Joint ci ratio: 7.047507e-02	ci left: 1.827700e-03	ci right 1.961810e-03	k: 3087	n:1630000
Cons ci ratio: 1.470829e-01	ci left: 4.035433e-04	ci right 4.681919e-04	k: 709	n:1630000
KS ci ratio: 5.163648e-03	ci left: 2.605362e-01	ci right 2.618855e-01	k: 425773	n:1630000
NHS   1630000 perm   1634 sec   (997 perm/sec)   p_kst 2.612104e-01   p_cons 4.349693e-04   p_joint 1.893865e-03

Joint ci ratio: 7.021398e-02	ci left: 1.830333e-03	ci right 1.964119e-03	k: 3110	n:1640000
Cons ci ratio: 1.466703e-01	ci left: 4.034321e-04	ci right 4.678657e-04	k: 713	n:1640000
KS ci ratio: 5.148118e-03	ci left: 2.605205e-01	ci right 2.618657e-01	k: 428356	n:1640000
NHS   1640000 perm   1651 sec   (993 perm/sec)   p_kst 2.611927e-01   p_cons 4.347561e-04   p_joint 1.896341e-03

Joint ci ratio: 6.997815e-02	ci left: 1.831745e-03	ci right 1.965165e-03	k: 3131	n:1650000
Cons ci ratio: 1.463632e-01	ci left: 4.027385e-04	ci right 4.669149e-04	k: 716	n:1650000
KS ci ratio: 5.132631e-03	ci left: 2.605123e-01	ci right 2.618534e-01	k: 430951	n:1650000
NHS   1650000 perm   1668 sec   (989 perm/sec)   p_kst 2.611824e-01   p_cons 4.339394e-04   p_joint 1.897576e-03

Joint ci ratio: 6.994500e-02	ci left: 1.822485e-03	ci right 1.955166e-03	k: 3134	n:1660000
Cons ci ratio: 1.459567e-01	ci left: 4.026339e-04	ci right 4.665999e-04	k: 720	n:1660000
KS ci ratio: 5.117130e-03	ci left: 2.605156e-01	ci right 2.618527e-01	k: 433565	n:1660000
NHS   1660000 perm   1685 sec   (985 perm/sec)   p_kst 2.611837e-01   p_cons 4.337349e-04   p_joint 1.887952e-03

Joint ci ratio: 6.973400e-02	ci left: 1.822751e-03	ci right 1.955034e-03	k: 3153	n:1670000
Cons ci ratio: 1.452532e-01	ci left: 4.042619e-04	ci right 4.681500e-04	k: 727	n:1670000
KS ci ratio: 5.101690e-03	ci left: 2.605249e-01	ci right 2.618580e-01	k: 436189	n:1670000
NHS   1670000 perm   1701 sec   (982 perm/sec)   p_kst 2.611910e-01   p_cons 4.353293e-04   p_joint 1.888024e-03

Joint ci ratio: 6.950296e-02	ci left: 1.824183e-03	ci right 1.956115e-03	k: 3174	n:1680000
Cons ci ratio: 1.450541e-01	ci left: 4.030028e-04	ci right 4.665971e-04	k: 729	n:1680000
KS ci ratio: 5.086389e-03	ci left: 2.605341e-01	ci right 2.618632e-01	k: 438813	n:1680000
NHS   1680000 perm   1718 sec   (978 perm/sec)   p_kst 2.611982e-01   p_cons 4.339286e-04   p_joint 1.889286e-03

Joint ci ratio: 7.061504e-02	ci left: 1.755834e-03	ci right 1.884936e-03	k: 3075	n:1690000
Cons ci ratio: 1.446584e-01	ci left: 4.028992e-04	ci right 4.662888e-04	k: 733	n:1690000
KS ci ratio: 5.071388e-03	ci left: 2.605307e-01	ci right 2.618559e-01	k: 441416	n:1690000
NHS   1690000 perm   1735 sec   (974 perm/sec)   p_kst 2.611929e-01   p_cons 4.337278e-04   p_joint 1.819527e-03

Joint ci ratio: 7.044355e-02	ci left: 1.754173e-03	ci right 1.882828e-03	k: 3090	n:1700000
Cons ci ratio: 1.444618e-01	ci left: 4.016631e-04	ci right 4.647649e-04	k: 735	n:1700000
KS ci ratio: 5.056211e-03	ci left: 2.605509e-01	ci right 2.618722e-01	k: 444059	n:1700000
NHS   1700000 perm   1753 sec   (970 perm/sec)   p_kst 2.612112e-01   p_cons 4.323529e-04   p_joint 1.817647e-03

Joint ci ratio: 7.028465e-02	ci left: 1.751958e-03	ci right 1.880148e-03	k: 3104	n:1710000
Cons ci ratio: 1.439736e-01	ci left: 4.021327e-04	ci right 4.650764e-04	k: 740	n:1710000
KS ci ratio: 5.041505e-03	ci left: 2.605452e-01	ci right 2.618626e-01	k: 446658	n:1710000
NHS   1710000 perm   1770 sec   (966 perm/sec)   p_kst 2.612035e-01   p_cons 4.327485e-04   p_joint 1.815205e-03

Joint ci ratio: 7.036453e-02	ci left: 1.737773e-03	ci right 1.865076e-03	k: 3097	n:1720000
Cons ci ratio: 1.437797e-01	ci left: 4.009156e-04	ci right 4.635771e-04	k: 742	n:1720000
KS ci ratio: 5.027026e-03	ci left: 2.605320e-01	ci right 2.618456e-01	k: 449244	n:1720000
NHS   1720000 perm   1788 sec   (962 perm/sec)   p_kst 2.611884e-01   p_cons 4.313953e-04   p_joint 1.800581e-03

Joint ci ratio: 7.016100e-02	ci left: 1.737950e-03	ci right 1.864883e-03	k: 3115	n:1730000
Cons ci ratio: 1.432026e-01	ci left: 4.019419e-04	ci right 4.644901e-04	k: 748	n:1730000
KS ci ratio: 5.011619e-03	ci left: 2.605998e-01	ci right 2.619097e-01	k: 451970	n:1730000
NHS   1730000 perm   1805 sec   (958 perm/sec)   p_kst 2.612543e-01   p_cons 4.323699e-04   p_joint 1.800578e-03

Joint ci ratio: 7.039941e-02	ci left: 1.716104e-03	ci right 1.841885e-03	k: 3094	n:1740000
Cons ci ratio: 1.432028e-01	ci left: 3.996319e-04	ci right 4.618207e-04	k: 748	n:1740000
KS ci ratio: 4.997372e-03	ci left: 2.605882e-01	ci right 2.618942e-01	k: 454559	n:1740000
NHS   1740000 perm   1824 sec   (954 perm/sec)   p_kst 2.612408e-01   p_cons 4.298851e-04   p_joint 1.778161e-03

Joint ci ratio: 7.399526e-02	ci left: 1.541885e-03	ci right 1.660917e-03	k: 2801	n:1750000
Cons ci ratio: 1.475013e-01	ci left: 3.736699e-04	ci right 4.337179e-04	k: 705	n:1750000
KS ci ratio: 4.982442e-03	ci left: 2.606389e-01	ci right 2.619413e-01	k: 457257	n:1750000
NHS   1750000 perm   1842 sec   (950 perm/sec)   p_kst 2.612897e-01   p_cons 4.028571e-04   p_joint 1.600571e-03

Joint ci ratio: 7.478842e-02	ci left: 1.500224e-03	ci right 1.617335e-03	k: 2742	n:1760000
Cons ci ratio: 1.470853e-01	ci left: 3.737357e-04	ci right 4.336101e-04	k: 709	n:1760000
KS ci ratio: 4.968464e-03	ci left: 2.606255e-01	ci right 2.619242e-01	k: 459843	n:1760000
NHS   1760000 perm   1861 sec   (946 perm/sec)   p_kst 2.612744e-01   p_cons 4.028409e-04   p_joint 1.557955e-03

Joint ci ratio: 7.450365e-02	ci left: 1.503391e-03	ci right 1.620283e-03	k: 2763	n:1770000
Cons ci ratio: 1.464676e-01	ci left: 3.748896e-04	ci right 4.346745e-04	k: 715	n:1770000
KS ci ratio: 4.954879e-03	ci left: 2.605908e-01	ci right 2.618857e-01	k: 462391	n:1770000
NHS   1770000 perm   1879 sec   (942 perm/sec)   p_kst 2.612379e-01   p_cons 4.039548e-04   p_joint 1.561017e-03

Joint ci ratio: 7.455803e-02	ci left: 1.492740e-03	ci right 1.608892e-03	k: 2759	n:1780000
Cons ci ratio: 1.456560e-01	ci left: 3.771136e-04	ci right 4.368910e-04	k: 723	n:1780000
KS ci ratio: 4.940649e-03	ci left: 2.606154e-01	ci right 2.619067e-01	k: 465044	n:1780000
NHS   1780000 perm   1897 sec   (938 perm/sec)   p_kst 2.612607e-01   p_cons 4.061798e-04   p_joint 1.550000e-03

Joint ci ratio: 7.423579e-02	ci left: 1.497559e-03	ci right 1.613561e-03	k: 2783	n:1790000
Cons ci ratio: 1.450561e-01	ci left: 3.782369e-04	ci right 4.379240e-04	k: 729	n:1790000
KS ci ratio: 4.926470e-03	ci left: 2.606453e-01	ci right 2.619331e-01	k: 467707	n:1790000
NHS   1790000 perm   1915 sec   (935 perm/sec)   p_kst 2.612888e-01   p_cons 4.072626e-04   p_joint 1.554749e-03

Joint ci ratio: 7.393088e-02	ci left: 1.501780e-03	ci right 1.617611e-03	k: 2806	n:1800000
Cons ci ratio: 1.444635e-01	ci left: 3.793482e-04	ci right 4.389451e-04	k: 735	n:1800000
KS ci ratio: 4.912348e-03	ci left: 2.606799e-01	ci right 2.619642e-01	k: 470379	n:1800000
NHS   1800000 perm   1934 sec   (931 perm/sec)   p_kst 2.613217e-01   p_cons 4.083333e-04   p_joint 1.558889e-03

Joint ci ratio: 7.368186e-02	ci left: 1.503787e-03	ci right 1.619365e-03	k: 2825	n:1810000
Cons ci ratio: 1.440726e-01	ci left: 3.793825e-04	ci right 4.388096e-04	k: 739	n:1810000
KS ci ratio: 4.899539e-03	ci left: 2.606203e-01	ci right 2.619009e-01	k: 472881	n:1810000
NHS   1810000 perm   1952 sec   (927 perm/sec)   p_kst 2.612602e-01   p_cons 4.082873e-04   p_joint 1.560773e-03

Joint ci ratio: 7.355195e-02	ci left: 1.500917e-03	ci right 1.616063e-03	k: 2835	n:1820000
Cons ci ratio: 1.437815e-01	ci left: 3.788870e-04	ci right 4.381062e-04	k: 742	n:1820000
KS ci ratio: 4.885557e-03	ci left: 2.606618e-01	ci right 2.619389e-01	k: 475566	n:1820000
NHS   1820000 perm   1970 sec   (924 perm/sec)   p_kst 2.613000e-01   p_cons 4.076923e-04   p_joint 1.557692e-03

Joint ci ratio: 7.331959e-02	ci left: 1.502371e-03	ci right 1.617248e-03	k: 2853	n:1830000
Cons ci ratio: 1.435884e-01	ci left: 3.778702e-04	ci right 4.368444e-04	k: 744	n:1830000
KS ci ratio: 4.872342e-03	ci left: 2.606516e-01	ci right 2.619252e-01	k: 478157	n:1830000
NHS   1830000 perm   1988 sec   (920 perm/sec)   p_kst 2.612880e-01   p_cons 4.065574e-04   p_joint 1.559016e-03

Joint ci ratio: 7.334565e-02	ci left: 1.493139e-03	ci right 1.607352e-03	k: 2851	n:1840000
Cons ci ratio: 1.432045e-01	ci left: 3.779124e-04	ci right 4.367221e-04	k: 748	n:1840000
KS ci ratio: 4.859179e-03	ci left: 2.606457e-01	ci right 2.619159e-01	k: 480756	n:1840000
NHS   1840000 perm   2007 sec   (917 perm/sec)   p_kst 2.612804e-01   p_cons 4.065217e-04   p_joint 1.549457e-03

Joint ci ratio: 7.325597e-02	ci left: 1.488782e-03	ci right 1.602517e-03	k: 2858	n:1850000
Cons ci ratio: 1.423516e-01	ci left: 3.805608e-04	ci right 4.393999e-04	k: 757	n:1850000
KS ci ratio: 4.845932e-03	ci left: 2.606551e-01	ci right 2.619218e-01	k: 483383	n:1850000
NHS   1850000 perm   2025 sec   (914 perm/sec)   p_kst 2.612881e-01   p_cons 4.091892e-04   p_joint 1.544865e-03

Joint ci ratio: 7.301369e-02	ci left: 1.490806e-03	ci right 1.604303e-03	k: 2877	n:1860000
Cons ci ratio: 1.416987e-01	ci left: 3.821445e-04	ci right 4.409346e-04	k: 764	n:1860000
KS ci ratio: 4.832860e-03	ci left: 2.606590e-01	ci right 2.619223e-01	k: 486000	n:1860000
NHS   1860000 perm   2044 sec   (910 perm/sec)   p_kst 2.612903e-01   p_cons 4.107527e-04   p_joint 1.546774e-03

Joint ci ratio: 7.309034e-02	ci left: 1.479684e-03	ci right 1.592457e-03	k: 2871	n:1870000
Cons ci ratio: 1.414217e-01	ci left: 3.816484e-04	ci right 4.402377e-04	k: 767	n:1870000
KS ci ratio: 4.819886e-03	ci left: 2.606635e-01	ci right 2.619234e-01	k: 488618	n:1870000
NHS   1870000 perm   2062 sec   (907 perm/sec)   p_kst 2.612930e-01   p_cons 4.101604e-04   p_joint 1.535294e-03

Joint ci ratio: 7.295085e-02	ci left: 1.477557e-03	ci right 1.589945e-03	k: 2882	n:1880000
Cons ci ratio: 1.409636e-01	ci left: 3.821840e-04	ci right 4.406495e-04	k: 772	n:1880000
KS ci ratio: 4.807441e-03	ci left: 2.606338e-01	ci right 2.618903e-01	k: 491172	n:1880000
NHS   1880000 perm   2081 sec   (903 perm/sec)   p_kst 2.612617e-01   p_cons 4.106383e-04   p_joint 1.532979e-03

Joint ci ratio: 7.291317e-02	ci left: 1.471298e-03	ci right 1.583149e-03	k: 2885	n:1890000
Cons ci ratio: 1.407816e-01	ci left: 3.811827e-04	ci right 4.394135e-04	k: 774	n:1890000
KS ci ratio: 4.794933e-03	ci left: 2.606172e-01	ci right 2.618703e-01	k: 493750	n:1890000
NHS   1890000 perm   2100 sec   (900 perm/sec)   p_kst 2.612434e-01   p_cons 4.095238e-04   p_joint 1.526455e-03

Joint ci ratio: 7.278727e-02	ci left: 1.468721e-03	ci right 1.580176e-03	k: 2895	n:1900000
Cons ci ratio: 1.405100e-01	ci left: 3.806999e-04	ci right 4.387353e-04	k: 777	n:1900000
KS ci ratio: 4.782249e-03	ci left: 2.606228e-01	ci right 2.618727e-01	k: 496370	n:1900000
NHS   1900000 perm   2119 sec   (897 perm/sec)   p_kst 2.612474e-01   p_cons 4.089474e-04   p_joint 1.523684e-03

Joint ci ratio: 7.267455e-02	ci left: 1.465658e-03	ci right 1.576700e-03	k: 2904	n:1910000
Cons ci ratio: 1.404199e-01	ci left: 3.792118e-04	ci right 4.369802e-04	k: 778	n:1910000
KS ci ratio: 4.769730e-03	ci left: 2.606231e-01	ci right 2.618697e-01	k: 498980	n:1910000
NHS   1910000 perm   2137 sec   (894 perm/sec)   p_kst 2.612461e-01   p_cons 4.073298e-04   p_joint 1.520419e-03

Joint ci ratio: 7.243798e-02	ci left: 1.467740e-03	ci right 1.578563e-03	k: 2923	n:1920000
Cons ci ratio: 1.398822e-01	ci left: 3.802522e-04	ci right 4.379388e-04	k: 784	n:1920000
KS ci ratio: 4.757116e-03	ci left: 2.606391e-01	ci right 2.618824e-01	k: 501620	n:1920000
NHS   1920000 perm   2157 sec   (890 perm/sec)   p_kst 2.612604e-01   p_cons 4.083333e-04   p_joint 1.522396e-03

Joint ci ratio: 6.547309e-02	ci left: 1.793177e-03	ci right 1.915061e-03	k: 3577	n:1930000
Cons ci ratio: 1.394388e-01	ci left: 3.807822e-04	ci right 4.383508e-04	k: 789	n:1930000
KS ci ratio: 4.751661e-03	ci left: 2.600818e-01	ci right 2.613210e-01	k: 503153	n:1930000
NHS   1930000 perm   2176 sec   (887 perm/sec)   p_kst 2.607010e-01   p_cons 4.088083e-04   p_joint 1.853368e-03

Joint ci ratio: 7.045149e-02	ci left: 1.537156e-03	ci right 1.649907e-03	k: 3090	n:1940000
Cons ci ratio: 1.391748e-01	ci left: 3.803119e-04	ci right 4.376915e-04	k: 792	n:1940000
KS ci ratio: 4.675190e-03	ci left: 2.653716e-01	ci right 2.666157e-01	k: 516027	n:1940000
NHS   1940000 perm   2195 sec   (884 perm/sec)   p_kst 2.659933e-01   p_cons 4.082474e-04   p_joint 1.592784e-03

Joint ci ratio: 7.044037e-02	ci left: 1.529777e-03	ci right 1.641968e-03	k: 3091	n:1950000
Cons ci ratio: 1.386512e-01	ci left: 3.813316e-04	ci right 4.386307e-04	k: 798	n:1950000
KS ci ratio: 4.662948e-03	ci left: 2.653932e-01	ci right 2.666341e-01	k: 518726	n:1950000
NHS   1950000 perm   2214 sec   (881 perm/sec)   p_kst 2.660133e-01   p_cons 4.092308e-04   p_joint 1.585128e-03

Joint ci ratio: 7.029281e-02	ci left: 1.528488e-03	ci right 1.640340e-03	k: 3104	n:1960000
Cons ci ratio: 1.378767e-01	ci left: 3.838190e-04	ci right 4.411433e-04	k: 807	n:1960000
KS ci ratio: 4.650874e-03	ci left: 2.654085e-01	ci right 2.666463e-01	k: 521413	n:1960000
NHS   1960000 perm   2234 sec   (877 perm/sec)   p_kst 2.660270e-01   p_cons 4.117347e-04   p_joint 1.583673e-03

Joint ci ratio: 7.015744e-02	ci left: 1.526713e-03	ci right 1.638212e-03	k: 3116	n:1970000
Cons ci ratio: 1.377064e-01	ci left: 3.828509e-04	ci right 4.399543e-04	k: 809	n:1970000
KS ci ratio: 4.639026e-03	ci left: 2.654125e-01	ci right 2.666471e-01	k: 524078	n:1970000
NHS   1970000 perm   2253 sec   (874 perm/sec)   p_kst 2.660294e-01   p_cons 4.106599e-04   p_joint 1.581726e-03

Joint ci ratio: 6.992220e-02	ci left: 1.529423e-03	ci right 1.640730e-03	k: 3137	n:1980000
Cons ci ratio: 1.373676e-01	ci left: 3.828680e-04	ci right 4.398219e-04	k: 813	n:1980000
KS ci ratio: 4.627215e-03	ci left: 2.654210e-01	ci right 2.666525e-01	k: 526752	n:1980000
NHS   1980000 perm   2273 sec   (871 perm/sec)   p_kst 2.660364e-01   p_cons 4.106061e-04   p_joint 1.584343e-03

Joint ci ratio: 6.965619e-02	ci left: 1.533587e-03	ci right 1.644756e-03	k: 3161	n:1990000
Cons ci ratio: 1.368641e-01	ci left: 3.838557e-04	ci right 4.407302e-04	k: 819	n:1990000
KS ci ratio: 4.615790e-03	ci left: 2.654042e-01	ci right 2.666326e-01	k: 529376	n:1990000
NHS   1990000 perm   2293 sec   (868 perm/sec)   p_kst 2.660181e-01   p_cons 4.115578e-04   p_joint 1.588442e-03

Joint ci ratio: 6.942594e-02	ci left: 1.536237e-03	ci right 1.647214e-03	k: 3182	n:2000000
Cons ci ratio: 1.364487e-01	ci left: 3.843510e-04	ci right 4.411120e-04	k: 824	n:2000000
KS ci ratio: 4.604101e-03	ci left: 2.654172e-01	ci right 2.666425e-01	k: 532059	n:2000000
NHS   2000000 perm   2312 sec   (865 perm/sec)   p_kst 2.660295e-01   p_cons 4.120000e-04   p_joint 1.591000e-03

Joint ci ratio: 6.930637e-02	ci left: 1.533971e-03	ci right 1.644587e-03	k: 3193	n:2010000
Cons ci ratio: 1.363662e-01	ci left: 3.829193e-04	ci right 4.394319e-04	k: 825	n:2010000
KS ci ratio: 4.592712e-03	ci left: 2.654121e-01	ci right 2.666343e-01	k: 534706	n:2010000
NHS   2010000 perm   2332 sec   (862 perm/sec)   p_kst 2.660229e-01   p_cons 4.104478e-04   p_joint 1.588557e-03

Joint ci ratio: 6.913343e-02	ci left: 1.534161e-03	ci right 1.644503e-03	k: 3209	n:2020000
Cons ci ratio: 1.362015e-01	ci left: 3.819800e-04	ci right 4.382803e-04	k: 827	n:2020000
KS ci ratio: 4.581081e-03	ci left: 2.654348e-01	ci right 2.666540e-01	k: 537409	n:2020000
NHS   2020000 perm   2352 sec   (859 perm/sec)   p_kst 2.660441e-01   p_cons 4.094059e-04   p_joint 1.588614e-03

Joint ci ratio: 6.892968e-02	ci left: 1.535802e-03	ci right 1.645923e-03	k: 3228	n:2030000
Cons ci ratio: 1.354671e-01	ci left: 3.843812e-04	ci right 4.407053e-04	k: 836	n:2030000
KS ci ratio: 4.570104e-03	ci left: 2.654090e-01	ci right 2.666252e-01	k: 540014	n:2030000
NHS   2030000 perm   2371 sec   (856 perm/sec)   p_kst 2.660167e-01   p_cons 4.118227e-04   p_joint 1.590148e-03

Joint ci ratio: 6.889790e-02	ci left: 1.529719e-03	ci right 1.639351e-03	k: 3231	n:2040000
Cons ci ratio: 1.350642e-01	ci left: 3.848650e-04	ci right 4.410789e-04	k: 841	n:2040000
KS ci ratio: 4.558867e-03	ci left: 2.654124e-01	ci right 2.666256e-01	k: 542678	n:2040000
NHS   2040000 perm   2391 sec   (853 perm/sec)   p_kst 2.660186e-01   p_cons 4.122549e-04   p_joint 1.583824e-03

Joint ci ratio: 6.868564e-02	ci left: 1.531845e-03	ci right 1.641278e-03	k: 3251	n:2050000
Cons ci ratio: 1.345855e-01	ci left: 3.858157e-04	ci right 4.419528e-04	k: 847	n:2050000
KS ci ratio: 4.547871e-03	ci left: 2.654020e-01	ci right 2.666123e-01	k: 545314	n:2050000
NHS   2050000 perm   2412 sec   (850 perm/sec)   p_kst 2.660068e-01   p_cons 4.131707e-04   p_joint 1.585854e-03

Joint ci ratio: 6.845438e-02	ci left: 1.534905e-03	ci right 1.644173e-03	k: 3273	n:2060000
Cons ci ratio: 1.341904e-01	ci left: 3.862884e-04	ci right 4.423161e-04	k: 852	n:2060000
KS ci ratio: 4.536854e-03	ci left: 2.654006e-01	ci right 2.666079e-01	k: 547968	n:2060000
NHS   2060000 perm   2432 sec   (847 perm/sec)   p_kst 2.660039e-01   p_cons 4.135922e-04   p_joint 1.588835e-03

Joint ci ratio: 7.136251e-02	ci left: 1.403603e-03	ci right 1.507945e-03	k: 3012	n:2070000
Cons ci ratio: 1.341906e-01	ci left: 3.844223e-04	ci right 4.401793e-04	k: 852	n:2070000
KS ci ratio: 4.525580e-03	ci left: 2.654281e-01	ci right 2.666325e-01	k: 550682	n:2070000
NHS   2070000 perm   2453 sec   (844 perm/sec)   p_kst 2.660300e-01   p_cons 4.115942e-04   p_joint 1.455072e-03

Joint ci ratio: 7.127988e-02	ci left: 1.400160e-03	ci right 1.504120e-03	k: 3019	n:2080000
Cons ci ratio: 1.341121e-01	ci left: 3.830387e-04	ci right 4.385600e-04	k: 853	n:2080000
KS ci ratio: 4.514556e-03	ci left: 2.654409e-01	ci right 2.666424e-01	k: 553366	n:2080000
NHS   2080000 perm   2473 sec   (841 perm/sec)   p_kst 2.660413e-01   p_cons 4.100962e-04   p_joint 1.451442e-03

Joint ci ratio: 7.105664e-02	ci left: 1.402390e-03	ci right 1.506176e-03	k: 3038	n:2090000
Cons ci ratio: 1.339554e-01	ci left: 3.821308e-04	ci right 4.374506e-04	k: 855	n:2090000
KS ci ratio: 4.503607e-03	ci left: 2.654541e-01	ci right 2.666528e-01	k: 556051	n:2090000
NHS   2090000 perm   2494 sec   (838 perm/sec)   p_kst 2.660531e-01   p_cons 4.090909e-04   p_joint 1.453589e-03

Joint ci ratio: 7.088191e-02	ci left: 1.402728e-03	ci right 1.506274e-03	k: 3053	n:2100000
Cons ci ratio: 1.336435e-01	ci left: 3.821522e-04	ci right 4.373360e-04	k: 859	n:2100000
KS ci ratio: 4.492946e-03	ci left: 2.654491e-01	ci right 2.666449e-01	k: 558698	n:2100000
NHS   2100000 perm   2514 sec   (835 perm/sec)   p_kst 2.660467e-01   p_cons 4.090476e-04   p_joint 1.453810e-03

Joint ci ratio: 7.077779e-02	ci left: 1.400270e-03	ci right 1.503476e-03	k: 3062	n:2110000
Cons ci ratio: 1.334884e-01	ci left: 3.812572e-04	ci right 4.362429e-04	k: 861	n:2110000
KS ci ratio: 4.482109e-03	ci left: 2.654659e-01	ci right 2.666589e-01	k: 561391	n:2110000
NHS   2110000 perm   2535 sec   (832 perm/sec)   p_kst 2.660621e-01   p_cons 4.080569e-04   p_joint 1.451185e-03

Joint ci ratio: 7.082436e-02	ci left: 1.391811e-03	ci right 1.494464e-03	k: 3058	n:2120000
Cons ci ratio: 1.330262e-01	ci left: 3.821947e-04	ci right 4.371096e-04	k: 867	n:2120000
KS ci ratio: 4.471583e-03	ci left: 2.654623e-01	ci right 2.666525e-01	k: 564041	n:2120000
NHS   2120000 perm   2556 sec   (830 perm/sec)   p_kst 2.660571e-01   p_cons 4.089623e-04   p_joint 1.442453e-03

Joint ci ratio: 7.062834e-02	ci left: 1.393117e-03	ci right 1.495570e-03	k: 3075	n:2130000
Cons ci ratio: 1.328733e-01	ci left: 3.813081e-04	ci right 4.360276e-04	k: 869	n:2130000
KS ci ratio: 4.460992e-03	ci left: 2.654710e-01	ci right 2.666583e-01	k: 566717	n:2130000
NHS   2130000 perm   2576 sec   (827 perm/sec)   p_kst 2.660643e-01   p_cons 4.079812e-04   p_joint 1.443662e-03

Joint ci ratio: 7.051388e-02	ci left: 1.391198e-03	ci right 1.493337e-03	k: 3085	n:2140000
Cons ci ratio: 1.327971e-01	ci left: 3.799780e-04	ci right 4.344729e-04	k: 870	n:2140000
KS ci ratio: 4.450816e-03	ci left: 2.654496e-01	ci right 2.666342e-01	k: 569329	n:2140000
NHS   2140000 perm   2597 sec   (824 perm/sec)   p_kst 2.660416e-01   p_cons 4.065421e-04   p_joint 1.441589e-03

Joint ci ratio: 7.039999e-02	ci left: 1.389296e-03	ci right 1.491124e-03	k: 3095	n:2150000
Cons ci ratio: 1.326449e-01	ci left: 3.791100e-04	ci right 4.334133e-04	k: 872	n:2150000
KS ci ratio: 4.440656e-03	ci left: 2.654332e-01	ci right 2.666149e-01	k: 571951	n:2150000
NHS   2150000 perm   2618 sec   (821 perm/sec)   p_kst 2.660237e-01   p_cons 4.055814e-04   p_joint 1.439535e-03

Joint ci ratio: 7.025267e-02	ci left: 1.388777e-03	ci right 1.490345e-03	k: 3108	n:2160000
Cons ci ratio: 1.323421e-01	ci left: 3.791453e-04	ci right 4.333199e-04	k: 876	n:2160000
KS ci ratio: 4.430450e-03	ci left: 2.654270e-01	ci right 2.666060e-01	k: 574595	n:2160000
NHS   2160000 perm   2639 sec   (818 perm/sec)   p_kst 2.660162e-01   p_cons 4.055556e-04   p_joint 1.438889e-03

Joint ci ratio: 7.010627e-02	ci left: 1.388263e-03	ci right 1.489573e-03	k: 3121	n:2170000
Cons ci ratio: 1.322668e-01	ci left: 3.778437e-04	ci right 4.317991e-04	k: 877	n:2170000
KS ci ratio: 4.420116e-03	ci left: 2.654384e-01	ci right 2.666147e-01	k: 577277	n:2170000
NHS   2170000 perm   2660 sec   (816 perm/sec)   p_kst 2.660263e-01   p_cons 4.041475e-04   p_joint 1.438249e-03

Joint ci ratio: 7.002793e-02	ci left: 1.385049e-03	ci right 1.486008e-03	k: 3128	n:2180000
Cons ci ratio: 1.320414e-01	ci left: 3.774411e-04	ci right 4.312400e-04	k: 880	n:2180000
KS ci ratio: 4.410196e-03	ci left: 2.654195e-01	ci right 2.665931e-01	k: 579893	n:2180000
NHS   2180000 perm   2681 sec   (813 perm/sec)   p_kst 2.660060e-01   p_cons 4.036697e-04   p_joint 1.434862e-03

Joint ci ratio: 6.986067e-02	ci left: 1.385454e-03	ci right 1.486191e-03	k: 3143	n:2190000
Cons ci ratio: 1.318919e-01	ci left: 3.766007e-04	ci right 4.302143e-04	k: 882	n:2190000
KS ci ratio: 4.400399e-03	ci left: 2.653957e-01	ci right 2.665666e-01	k: 582498	n:2190000
NHS   2190000 perm   2702 sec   (810 perm/sec)   p_kst 2.659808e-01   p_cons 4.027397e-04   p_joint 1.435160e-03

Joint ci ratio: 6.966148e-02	ci left: 1.387196e-03	ci right 1.487760e-03	k: 3161	n:2200000
Cons ci ratio: 1.315200e-01	ci left: 3.770867e-04	ci right 4.306063e-04	k: 887	n:2200000
KS ci ratio: 4.390457e-03	ci left: 2.653908e-01	ci right 2.665589e-01	k: 585144	n:2200000
NHS   2200000 perm   2724 sec   (808 perm/sec)   p_kst 2.659745e-01   p_cons 4.031818e-04   p_joint 1.436818e-03

Joint ci ratio: 7.118858e-02	ci left: 1.321351e-03	ci right 1.419329e-03	k: 3027	n:2210000
Cons ci ratio: 1.312984e-01	ci left: 3.766933e-04	ci right 4.300600e-04	k: 890	n:2210000
KS ci ratio: 4.380511e-03	ci left: 2.653922e-01	ci right 2.665577e-01	k: 587804	n:2210000
NHS   2210000 perm   2745 sec   (805 perm/sec)   p_kst 2.659747e-01   p_cons 4.027149e-04   p_joint 1.369683e-03

Joint ci ratio: 7.096619e-02	ci left: 1.323806e-03	ci right 1.421646e-03	k: 3046	n:2220000
Cons ci ratio: 1.307856e-01	ci left: 3.780463e-04	ci right 4.313792e-04	k: 897	n:2220000
KS ci ratio: 4.370532e-03	ci left: 2.654026e-01	ci right 2.665655e-01	k: 590484	n:2220000
NHS   2220000 perm   2766 sec   (803 perm/sec)   p_kst 2.659838e-01   p_cons 4.040541e-04   p_joint 1.372072e-03

Joint ci ratio: 7.085008e-02	ci left: 1.322274e-03	ci right 1.419835e-03	k: 3056	n:2230000
Cons ci ratio: 1.303508e-01	ci left: 3.789537e-04	ci right 4.322232e-04	k: 903	n:2230000
KS ci ratio: 4.360410e-03	ci left: 2.654318e-01	ci right 2.665921e-01	k: 593206	n:2230000
NHS   2230000 perm   2788 sec   (800 perm/sec)   p_kst 2.660117e-01   p_cons 4.049327e-04   p_joint 1.370404e-03

Joint ci ratio: 7.064235e-02	ci left: 1.324265e-03	ci right 1.421674e-03	k: 3074	n:2240000
Cons ci ratio: 1.301351e-01	ci left: 3.785576e-04	ci right 4.316765e-04	k: 906	n:2240000
KS ci ratio: 4.350334e-03	ci left: 2.654629e-01	ci right 2.666207e-01	k: 595933	n:2240000
NHS   2240000 perm   2810 sec   (797 perm/sec)   p_kst 2.660415e-01   p_cons 4.044643e-04   p_joint 1.372321e-03

Joint ci ratio: 7.048208e-02	ci left: 1.324492e-03	ci right 1.421688e-03	k: 3088	n:2250000
Cons ci ratio: 1.299919e-01	ci left: 3.777351e-04	ci right 4.306757e-04	k: 908	n:2250000
KS ci ratio: 4.340450e-03	ci left: 2.654827e-01	ci right 2.666379e-01	k: 598635	n:2250000
NHS   2250000 perm   2831 sec   (795 perm/sec)   p_kst 2.660600e-01   p_cons 4.035556e-04   p_joint 1.372444e-03

Joint ci ratio: 7.024360e-02	ci left: 1.327760e-03	ci right 1.424853e-03	k: 3109	n:2260000
Cons ci ratio: 1.297068e-01	ci left: 3.777761e-04	ci right 4.305975e-04	k: 912	n:2260000
KS ci ratio: 4.330864e-03	ci left: 2.654815e-01	ci right 2.666342e-01	k: 601290	n:2260000
NHS   2260000 perm   2853 sec   (792 perm/sec)   p_kst 2.660575e-01   p_cons 4.035398e-04   p_joint 1.375664e-03

Joint ci ratio: 6.414056e-02	ci left: 1.590032e-03	ci right 1.695827e-03	k: 3728	n:2270000
Cons ci ratio: 1.294943e-01	ci left: 3.773906e-04	ci right 4.300650e-04	k: 915	n:2270000
KS ci ratio: 4.321415e-03	ci left: 2.654737e-01	ci right 2.666238e-01	k: 603930	n:2270000
NHS   2270000 perm   2875 sec   (790 perm/sec)   p_kst 2.660485e-01   p_cons 4.030837e-04   p_joint 1.642291e-03

Joint ci ratio: 6.398630e-02	ci left: 1.590827e-03	ci right 1.696410e-03	k: 3746	n:2280000
Cons ci ratio: 1.293532e-01	ci left: 3.765842e-04	ci right 4.290843e-04	k: 917	n:2280000
KS ci ratio: 4.311949e-03	ci left: 2.654730e-01	ci right 2.666206e-01	k: 606586	n:2280000
NHS   2280000 perm   2897 sec   (787 perm/sec)   p_kst 2.660465e-01   p_cons 4.021930e-04   p_joint 1.642982e-03

Joint ci ratio: 6.385012e-02	ci left: 1.590755e-03	ci right 1.696101e-03	k: 3762	n:2290000
Cons ci ratio: 1.291424e-01	ci left: 3.762074e-04	ci right 4.285630e-04	k: 920	n:2290000
KS ci ratio: 4.302652e-03	ci left: 2.654627e-01	ci right 2.666078e-01	k: 609220	n:2290000
NHS   2290000 perm   2919 sec   (785 perm/sec)   p_kst 2.660349e-01   p_cons 4.017467e-04   p_joint 1.642795e-03

Joint ci ratio: 6.377401e-02	ci left: 1.587689e-03	ci right 1.692702e-03	k: 3771	n:2300000
Cons ci ratio: 1.290025e-01	ci left: 3.754132e-04	ci right 4.275973e-04	k: 922	n:2300000
KS ci ratio: 4.292692e-03	ci left: 2.655181e-01	ci right 2.666608e-01	k: 612005	n:2300000
NHS   2300000 perm   2941 sec   (782 perm/sec)   p_kst 2.660891e-01   p_cons 4.008696e-04   p_joint 1.639565e-03

Joint ci ratio: 6.379965e-02	ci left: 1.579538e-03	ci right 1.684055e-03	k: 3768	n:2310000
Cons ci ratio: 1.287933e-01	ci left: 3.750448e-04	ci right 4.270868e-04	k: 925	n:2310000
KS ci ratio: 4.283376e-03	ci left: 2.655207e-01	ci right 2.666609e-01	k: 614669	n:2310000
NHS   2310000 perm   2963 sec   (780 perm/sec)   p_kst 2.660905e-01   p_cons 4.004329e-04   p_joint 1.631169e-03

Joint ci ratio: 6.366467e-02	ci left: 1.579516e-03	ci right 1.683803e-03	k: 3784	n:2320000
Cons ci ratio: 1.286545e-01	ci left: 3.742626e-04	ci right 4.261357e-04	k: 927	n:2320000
KS ci ratio: 4.274223e-03	ci left: 2.655138e-01	ci right 2.666515e-01	k: 617311	n:2320000
NHS   2320000 perm   2986 sec   (777 perm/sec)   p_kst 2.660823e-01   p_cons 3.995690e-04   p_joint 1.631034e-03

Joint ci ratio: 6.391912e-02	ci left: 1.560067e-03	ci right 1.663496e-03	k: 3754	n:2330000
Cons ci ratio: 1.283093e-01	ci left: 3.747332e-04	ci right 4.265217e-04	k: 932	n:2330000
KS ci ratio: 4.265467e-03	ci left: 2.654760e-01	ci right 2.666112e-01	k: 619881	n:2330000
NHS   2330000 perm   3008 sec   (774 perm/sec)   p_kst 2.660433e-01   p_cons 4.000000e-04   p_joint 1.611159e-03

Joint ci ratio: 6.396201e-02	ci left: 1.551297e-03	ci right 1.654216e-03	k: 3749	n:2340000
Cons ci ratio: 1.278987e-01	ci left: 3.756138e-04	ci right 4.273451e-04	k: 938	n:2340000
KS ci ratio: 4.256527e-03	ci left: 2.654604e-01	ci right 2.665932e-01	k: 622502	n:2340000
NHS   2340000 perm   3031 sec   (772 perm/sec)   p_kst 2.660265e-01   p_cons 4.008547e-04   p_joint 1.602137e-03

Joint ci ratio: 6.383448e-02	ci left: 1.550977e-03	ci right 1.653662e-03	k: 3764	n:2350000
Cons ci ratio: 1.274919e-01	ci left: 3.764871e-04	ci right 4.281613e-04	k: 944	n:2350000
KS ci ratio: 4.247740e-03	ci left: 2.654360e-01	ci right 2.665663e-01	k: 625102	n:2350000
NHS   2350000 perm   3054 sec   (769 perm/sec)   p_kst 2.660009e-01   p_cons 4.017021e-04   p_joint 1.601702e-03

Joint ci ratio: 6.371615e-02	ci left: 1.550242e-03	ci right 1.652682e-03	k: 3778	n:2360000
Cons ci ratio: 1.273573e-01	ci left: 3.757122e-04	ci right 4.272216e-04	k: 946	n:2360000
KS ci ratio: 4.238745e-03	ci left: 2.654359e-01	ci right 2.665638e-01	k: 627759	n:2360000
NHS   2360000 perm   3077 sec   (767 perm/sec)   p_kst 2.659996e-01   p_cons 4.008475e-04   p_joint 1.600847e-03

Joint ci ratio: 6.430709e-02	ci left: 1.515052e-03	ci right 1.616130e-03	k: 3709	n:2370000
Cons ci ratio: 1.271561e-01	ci left: 3.753524e-04	ci right 4.267250e-04	k: 949	n:2370000
KS ci ratio: 4.229893e-03	ci left: 2.654278e-01	ci right 2.665533e-01	k: 630397	n:2370000
NHS   2370000 perm   3099 sec   (765 perm/sec)   p_kst 2.659903e-01   p_cons 4.004219e-04   p_joint 1.564979e-03

Joint ci ratio: 6.421203e-02	ci left: 1.513234e-03	ci right 1.614035e-03	k: 3720	n:2380000
Cons ci ratio: 1.270893e-01	ci left: 3.741821e-04	ci right 4.253656e-04	k: 950	n:2380000
KS ci ratio: 4.221015e-03	ci left: 2.654274e-01	ci right 2.665505e-01	k: 633053	n:2380000
NHS   2380000 perm   3122 sec   (762 perm/sec)   p_kst 2.659887e-01   p_cons 3.991597e-04   p_joint 1.563025e-03

Joint ci ratio: 6.163617e-02	ci left: 1.637456e-03	ci right 1.742000e-03	k: 4037	n:2390000
Cons ci ratio: 1.266902e-01	ci left: 3.750473e-04	ci right 4.261759e-04	k: 956	n:2390000
KS ci ratio: 4.212261e-03	ci left: 2.654206e-01	ci right 2.665414e-01	k: 635694	n:2390000
NHS   2390000 perm   3145 sec   (760 perm/sec)   p_kst 2.659808e-01   p_cons 4.000000e-04   p_joint 1.689121e-03

Joint ci ratio: 6.150683e-02	ci left: 1.637607e-03	ci right 1.741934e-03	k: 4054	n:2400000
Cons ci ratio: 1.264263e-01	ci left: 3.750985e-04	ci right 4.261196e-04	k: 960	n:2400000
KS ci ratio: 4.203368e-03	ci left: 2.654319e-01	ci right 2.665503e-01	k: 638378	n:2400000
NHS   2400000 perm   3168 sec   (758 perm/sec)   p_kst 2.659908e-01   p_cons 4.000000e-04   p_joint 1.689167e-03

Joint ci ratio: 6.143122e-02	ci left: 1.634898e-03	ci right 1.738920e-03	k: 4064	n:2410000
Cons ci ratio: 1.262950e-01	ci left: 3.743457e-04	ci right 4.252076e-04	k: 962	n:2410000
KS ci ratio: 4.194896e-03	ci left: 2.654090e-01	ci right 2.665251e-01	k: 640980	n:2410000
NHS   2410000 perm   3191 sec   (755 perm/sec)   p_kst 2.659668e-01   p_cons 3.991701e-04   p_joint 1.686307e-03

Joint ci ratio: 6.148448e-02	ci left: 1.625294e-03	ci right 1.728797e-03	k: 4057	n:2420000
Cons ci ratio: 1.260987e-01	ci left: 3.739994e-04	ci right 4.247293e-04	k: 965	n:2420000
KS ci ratio: 4.186170e-03	ci left: 2.654149e-01	ci right 2.665287e-01	k: 643651	n:2420000
NHS   2420000 perm   3214 sec   (753 perm/sec)   p_kst 2.659715e-01   p_cons 3.987603e-04   p_joint 1.676446e-03

Joint ci ratio: 6.076888e-02	ci left: 1.657508e-03	ci right 1.761792e-03	k: 4153	n:2430000
Cons ci ratio: 1.259684e-01	ci left: 3.732573e-04	ci right 4.238304e-04	k: 967	n:2430000
KS ci ratio: 4.254991e-03	ci left: 2.583107e-01	ci right 2.594125e-01	k: 629033	n:2430000
NHS   2430000 perm   3237 sec   (751 perm/sec)   p_kst 2.588613e-01   p_cons 3.979424e-04   p_joint 1.709053e-03

Joint ci ratio: 6.062308e-02	ci left: 1.658788e-03	ci right 1.762892e-03	k: 4173	n:2440000
Cons ci ratio: 1.258386e-01	ci left: 3.725215e-04	ci right 4.229389e-04	k: 969	n:2440000
KS ci ratio: 4.246415e-03	ci left: 2.582980e-01	ci right 2.593976e-01	k: 631588	n:2440000
NHS   2440000 perm   3261 sec   (748 perm/sec)   p_kst 2.588475e-01   p_cons 3.971311e-04   p_joint 1.710246e-03

Joint ci ratio: 6.049277e-02	ci left: 1.659253e-03	ci right 1.763155e-03	k: 4191	n:2450000
Cons ci ratio: 1.257091e-01	ci left: 3.717916e-04	ci right 4.220546e-04	k: 971	n:2450000
KS ci ratio: 4.238040e-03	ci left: 2.582721e-01	ci right 2.593693e-01	k: 634110	n:2450000
NHS   2450000 perm   3284 sec   (746 perm/sec)   p_kst 2.588204e-01   p_cons 3.963265e-04   p_joint 1.710612e-03

Joint ci ratio: 6.036330e-02	ci left: 1.659714e-03	ci right 1.763415e-03	k: 4209	n:2460000
Cons ci ratio: 1.253870e-01	ci left: 3.722489e-04	ci right 4.224353e-04	k: 976	n:2460000
KS ci ratio: 4.229256e-03	ci left: 2.582877e-01	ci right 2.593828e-01	k: 636734	n:2460000
NHS   2460000 perm   3307 sec   (744 perm/sec)   p_kst 2.588350e-01   p_cons 3.967480e-04   p_joint 1.710976e-03

Joint ci ratio: 6.020614e-02	ci left: 1.661768e-03	ci right 1.765317e-03	k: 4231	n:2470000
Cons ci ratio: 1.251949e-01	ci left: 3.719184e-04	ci right 4.219777e-04	k: 979	n:2470000
KS ci ratio: 4.220746e-03	ci left: 2.582834e-01	ci right 2.593763e-01	k: 639309	n:2470000
NHS   2470000 perm   3332 sec   (741 perm/sec)   p_kst 2.588296e-01   p_cons 3.963563e-04   p_joint 1.712955e-03

Joint ci ratio: 6.035654e-02	ci left: 1.646726e-03	ci right 1.749604e-03	k: 4210	n:2480000
Cons ci ratio: 1.248134e-01	ci left: 3.727624e-04	ci right 4.227711e-04	k: 985	n:2480000
KS ci ratio: 4.212039e-03	ci left: 2.583017e-01	ci right 2.593924e-01	k: 641940	n:2480000
NHS   2480000 perm   3355 sec   (739 perm/sec)   p_kst 2.588468e-01   p_cons 3.971774e-04   p_joint 1.697581e-03

Joint ci ratio: 6.029940e-02	ci left: 1.643277e-03	ci right 1.745839e-03	k: 4218	n:2490000
Cons ci ratio: 1.246240e-01	ci left: 3.724326e-04	ci right 4.223156e-04	k: 988	n:2490000
KS ci ratio: 4.203425e-03	ci left: 2.583163e-01	ci right 2.594048e-01	k: 644562	n:2490000
NHS   2490000 perm   3379 sec   (737 perm/sec)   p_kst 2.588602e-01   p_cons 3.967871e-04   p_joint 1.693976e-03

Joint ci ratio: 6.024242e-02	ci left: 1.639856e-03	ci right 1.742104e-03	k: 4226	n:2500000
Cons ci ratio: 1.244982e-01	ci left: 3.717179e-04	ci right 4.214513e-04	k: 990	n:2500000
KS ci ratio: 4.195161e-03	ci left: 2.583035e-01	ci right 2.593898e-01	k: 647116	n:2500000
NHS   2500000 perm   3403 sec   (735 perm/sec)   p_kst 2.588464e-01   p_cons 3.960000e-04   p_joint 1.690400e-03

Joint ci ratio: 6.013584e-02	ci left: 1.639209e-03	ci right 1.741229e-03	k: 4241	n:2510000
Cons ci ratio: 1.242477e-01	ci left: 3.717810e-04	ci right 4.214154e-04	k: 994	n:2510000
KS ci ratio: 4.186859e-03	ci left: 2.582989e-01	ci right 2.593830e-01	k: 649690	n:2510000
NHS   2510000 perm   3427 sec   (732 perm/sec)   p_kst 2.588406e-01   p_cons 3.960159e-04   p_joint 1.689641e-03

Joint ci ratio: 6.001570e-02	ci left: 1.639349e-03	ci right 1.741167e-03	k: 4258	n:2520000
Cons ci ratio: 1.239367e-01	ci left: 3.722282e-04	ci right 4.217888e-04	k: 999	n:2520000
KS ci ratio: 4.178739e-03	ci left: 2.582819e-01	ci right 2.593639e-01	k: 652233	n:2520000
NHS   2520000 perm   3451 sec   (730 perm/sec)   p_kst 2.588226e-01   p_cons 3.964286e-04   p_joint 1.689683e-03

Joint ci ratio: 6.004415e-02	ci left: 1.631312e-03	ci right 1.732680e-03	k: 4254	n:2530000
Cons ci ratio: 1.236280e-01	ci left: 3.726721e-04	ci right 4.221590e-04	k: 1004	n:2530000
KS ci ratio: 4.170323e-03	ci left: 2.582967e-01	ci right 2.593765e-01	k: 654856	n:2530000
NHS   2530000 perm   3476 sec   (728 perm/sec)   p_kst 2.588364e-01   p_cons 3.968379e-04   p_joint 1.681423e-03

Joint ci ratio: 5.993158e-02	ci left: 1.631094e-03	ci right 1.732252e-03	k: 4270	n:2540000
Cons ci ratio: 1.235052e-01	ci left: 3.719679e-04	ci right 4.213087e-04	k: 1006	n:2540000
KS ci ratio: 4.162189e-03	ci left: 2.582902e-01	ci right 2.593678e-01	k: 657425	n:2540000
NHS   2540000 perm   3501 sec   (726 perm/sec)   p_kst 2.588287e-01   p_cons 3.960630e-04   p_joint 1.681102e-03

Joint ci ratio: 5.980568e-02	ci left: 1.631651e-03	ci right 1.732624e-03	k: 4288	n:2550000
Cons ci ratio: 1.233216e-01	ci left: 3.716494e-04	ci right 4.208693e-04	k: 1009	n:2550000
KS ci ratio: 4.153821e-03	ci left: 2.583095e-01	ci right 2.593851e-01	k: 660060	n:2550000
NHS   2550000 perm   3525 sec   (723 perm/sec)   p_kst 2.588471e-01   p_cons 3.956863e-04   p_joint 1.681569e-03

Joint ci ratio: 5.964589e-02	ci left: 1.634127e-03	ci right 1.734974e-03	k: 4311	n:2560000
Cons ci ratio: 1.228360e-01	ci left: 3.732264e-04	ci right 4.224464e-04	k: 1017	n:2560000
KS ci ratio: 4.145825e-03	ci left: 2.582991e-01	ci right 2.593725e-01	k: 662619	n:2560000
NHS   2560000 perm   3550 sec   (721 perm/sec)   p_kst 2.588355e-01   p_cons 3.972656e-04   p_joint 1.683984e-03

Joint ci ratio: 5.954933e-02	ci left: 1.633135e-03	ci right 1.733752e-03	k: 4325	n:2570000
Cons ci ratio: 1.225354e-01	ci left: 3.736600e-04	ci right 4.228079e-04	k: 1022	n:2570000
KS ci ratio: 4.137837e-03	ci left: 2.582922e-01	ci right 2.593636e-01	k: 665187	n:2570000
NHS   2570000 perm   3574 sec   (719 perm/sec)   p_kst 2.588276e-01   p_cons 3.976654e-04   p_joint 1.682879e-03

Joint ci ratio: 5.945324e-02	ci left: 1.632151e-03	ci right 1.732539e-03	k: 4339	n:2580000
Cons ci ratio: 1.222371e-01	ci left: 3.740904e-04	ci right 4.231664e-04	k: 1027	n:2580000
KS ci ratio: 4.130032e-03	ci left: 2.582726e-01	ci right 2.593419e-01	k: 667722	n:2580000
NHS   2580000 perm   3599 sec   (717 perm/sec)   p_kst 2.588070e-01   p_cons 3.980620e-04   p_joint 1.681783e-03

Joint ci ratio: 5.939178e-02	ci left: 1.629272e-03	ci right 1.729376e-03	k: 4348	n:2590000
Cons ci ratio: 1.222372e-01	ci left: 3.726460e-04	ci right 4.215325e-04	k: 1027	n:2590000
KS ci ratio: 4.122205e-03	ci left: 2.582594e-01	ci right 2.593265e-01	k: 670273	n:2590000
NHS   2590000 perm   3623 sec   (715 perm/sec)   p_kst 2.587927e-01   p_cons 3.965251e-04   p_joint 1.678764e-03

Joint ci ratio: 5.947422e-02	ci left: 1.618459e-03	ci right 1.718041e-03	k: 4336	n:2600000
Cons ci ratio: 1.221185e-01	ci left: 3.719585e-04	ci right 4.207040e-04	k: 1029	n:2600000
KS ci ratio: 4.113936e-03	ci left: 2.582915e-01	ci right 2.593567e-01	k: 672942	n:2600000
NHS   2600000 perm   3648 sec   (713 perm/sec)   p_kst 2.588238e-01   p_cons 3.957692e-04   p_joint 1.667692e-03

Joint ci ratio: 5.969541e-02	ci left: 1.600179e-03	ci right 1.699016e-03	k: 4304	n:2610000
Cons ci ratio: 1.220001e-01	ci left: 3.712762e-04	ci right 4.198818e-04	k: 1031	n:2610000
KS ci ratio: 4.106032e-03	ci left: 2.582940e-01	ci right 2.593571e-01	k: 675534	n:2610000
NHS   2610000 perm   3673 sec   (711 perm/sec)   p_kst 2.588253e-01   p_cons 3.950192e-04   p_joint 1.649042e-03

Joint ci ratio: 5.959861e-02	ci left: 1.599336e-03	ci right 1.697954e-03	k: 4318	n:2620000
Cons ci ratio: 1.217056e-01	ci left: 3.717094e-04	ci right 4.202457e-04	k: 1036	n:2620000
KS ci ratio: 4.098336e-03	ci left: 2.582812e-01	ci right 2.593422e-01	k: 678086	n:2620000
NHS   2620000 perm   3697 sec   (709 perm/sec)   p_kst 2.588115e-01   p_cons 3.954198e-04   p_joint 1.648092e-03

Joint ci ratio: 5.966803e-02	ci left: 1.589509e-03	ci right 1.687640e-03	k: 4308	n:2630000
Cons ci ratio: 1.215300e-01	ci left: 3.714020e-04	ci right 4.198232e-04	k: 1039	n:2630000
KS ci ratio: 4.090651e-03	ci left: 2.582715e-01	ci right 2.593305e-01	k: 680646	n:2630000
NHS   2630000 perm   3722 sec   (707 perm/sec)   p_kst 2.588008e-01   p_cons 3.950570e-04   p_joint 1.638023e-03

Joint ci ratio: 6.273996e-02	ci left: 1.430183e-03	ci right 1.523189e-03	k: 3897	n:2640000
Cons ci ratio: 1.212389e-01	ci left: 3.718316e-04	ci right 4.201844e-04	k: 1044	n:2640000
KS ci ratio: 4.182443e-03	ci left: 2.491450e-01	ci right 2.501896e-01	k: 659121	n:2640000
NHS   2640000 perm   3747 sec   (705 perm/sec)   p_kst 2.496670e-01   p_cons 3.954545e-04   p_joint 1.476136e-03

Joint ci ratio: 6.274819e-02	ci left: 1.424415e-03	ci right 1.517058e-03	k: 3896	n:2650000
Cons ci ratio: 1.210075e-01	ci left: 3.718922e-04	ci right 4.201539e-04	k: 1048	n:2650000
KS ci ratio: 4.174665e-03	ci left: 2.491352e-01	ci right 2.501778e-01	k: 661589	n:2650000
NHS   2650000 perm   3772 sec   (703 perm/sec)   p_kst 2.496562e-01   p_cons 3.954717e-04   p_joint 1.470189e-03

Joint ci ratio: 6.265184e-02	ci left: 1.423500e-03	ci right 1.515936e-03	k: 3908	n:2660000
Cons ci ratio: 1.207774e-01	ci left: 3.719524e-04	ci right 4.201236e-04	k: 1052	n:2660000
KS ci ratio: 4.166854e-03	ci left: 2.491322e-01	ci right 2.501728e-01	k: 664075	n:2660000
NHS   2660000 perm   3796 sec   (701 perm/sec)   p_kst 2.496523e-01   p_cons 3.954887e-04   p_joint 1.469173e-03

Joint ci ratio: 6.257990e-02	ci left: 1.421487e-03	ci right 1.513682e-03	k: 3917	n:2670000
Cons ci ratio: 1.206058e-01	ci left: 3.716490e-04	ci right 4.197076e-04	k: 1055	n:2670000
KS ci ratio: 4.159242e-03	ci left: 2.491154e-01	ci right 2.501541e-01	k: 666524	n:2670000
NHS   2670000 perm   3821 sec   (699 perm/sec)   p_kst 2.496345e-01   p_cons 3.951311e-04   p_joint 1.467041e-03

Joint ci ratio: 6.249228e-02	ci left: 1.420223e-03	ci right 1.512203e-03	k: 3928	n:2680000
Cons ci ratio: 1.203212e-01	ci left: 3.720717e-04	ci right 4.200634e-04	k: 1060	n:2680000
KS ci ratio: 4.151278e-03	ci left: 2.491341e-01	ci right 2.501709e-01	k: 669068	n:2680000
NHS   2680000 perm   3846 sec   (697 perm/sec)   p_kst 2.496522e-01   p_cons 3.955224e-04   p_joint 1.465672e-03

Joint ci ratio: 5.723900e-02	ci left: 1.690693e-03	ci right 1.790682e-03	k: 4681	n:2690000
Cons ci ratio: 1.197581e-01	ci left: 3.742944e-04	ci right 4.223308e-04	k: 1070	n:2690000
KS ci ratio: 4.143795e-03	ci left: 2.491134e-01	ci right 2.501481e-01	k: 671506	n:2690000
NHS   2690000 perm   3872 sec   (695 perm/sec)   p_kst 2.496305e-01   p_cons 3.977695e-04   p_joint 1.740149e-03

Joint ci ratio: 5.714146e-02	ci left: 1.690273e-03	ci right 1.790060e-03	k: 4697	n:2700000
Cons ci ratio: 1.196464e-01	ci left: 3.736267e-04	ci right 4.215296e-04	k: 1072	n:2700000
KS ci ratio: 4.136353e-03	ci left: 2.490927e-01	ci right 2.501256e-01	k: 673944	n:2700000
NHS   2700000 perm   3897 sec   (693 perm/sec)   p_kst 2.496089e-01   p_cons 3.970370e-04   p_joint 1.739630e-03

Joint ci ratio: 5.698995e-02	ci left: 1.693129e-03	ci right 1.792811e-03	k: 4722	n:2710000
Cons ci ratio: 1.193686e-01	ci left: 3.740378e-04	ci right 4.218742e-04	k: 1077	n:2710000
KS ci ratio: 4.128515e-03	ci left: 2.491117e-01	ci right 2.501427e-01	k: 676489	n:2710000
NHS   2710000 perm   3923 sec   (691 perm/sec)   p_kst 2.496269e-01   p_cons 3.974170e-04   p_joint 1.742435e-03

Joint ci ratio: 5.690570e-02	ci left: 1.691978e-03	ci right 1.791441e-03	k: 4736	n:2720000
Cons ci ratio: 1.192581e-01	ci left: 3.733760e-04	ci right 4.210805e-04	k: 1079	n:2720000
KS ci ratio: 4.120803e-03	ci left: 2.491232e-01	ci right 2.501523e-01	k: 679014	n:2720000
NHS   2720000 perm   3949 sec   (689 perm/sec)   p_kst 2.496375e-01   p_cons 3.966912e-04   p_joint 1.741176e-03

Joint ci ratio: 5.679789e-02	ci left: 1.692280e-03	ci right 1.791566e-03	k: 4754	n:2730000
Cons ci ratio: 1.192582e-01	ci left: 3.720083e-04	ci right 4.195381e-04	k: 1079	n:2730000
KS ci ratio: 4.113121e-03	ci left: 2.491358e-01	ci right 2.501629e-01	k: 681542	n:2730000
NHS   2730000 perm   3975 sec   (687 perm/sec)   p_kst 2.496491e-01   p_cons 3.952381e-04   p_joint 1.741392e-03

Joint ci ratio: 5.664315e-02	ci left: 1.695458e-03	ci right 1.794651e-03	k: 4780	n:2740000
Cons ci ratio: 1.190379e-01	ci left: 3.720670e-04	ci right 4.195102e-04	k: 1083	n:2740000
KS ci ratio: 4.105575e-03	ci left: 2.491398e-01	ci right 2.501651e-01	k: 684047	n:2740000
NHS   2740000 perm   4001 sec   (685 perm/sec)   p_kst 2.496522e-01   p_cons 3.952555e-04   p_joint 1.744526e-03

Joint ci ratio: 5.663146e-02	ci left: 1.690010e-03	ci right 1.788862e-03	k: 4782	n:2750000
Cons ci ratio: 1.187098e-01	ci left: 3.728310e-04	ci right 4.202314e-04	k: 1089	n:2750000
KS ci ratio: 4.097938e-03	ci left: 2.491558e-01	ci right 2.501793e-01	k: 686585	n:2750000
NHS   2750000 perm   4027 sec   (683 perm/sec)   p_kst 2.496673e-01   p_cons 3.960000e-04   p_joint 1.738909e-03

Joint ci ratio: 5.654290e-02	ci left: 1.689245e-03	ci right 1.787893e-03	k: 4797	n:2760000
Cons ci ratio: 1.182226e-01	ci left: 3.746444e-04	ci right 4.220663e-04	k: 1098	n:2760000
KS ci ratio: 4.090538e-03	ci left: 2.491540e-01	ci right 2.501756e-01	k: 689074	n:2760000
NHS   2760000 perm   4053 sec   (681 perm/sec)   p_kst 2.496645e-01   p_cons 3.978261e-04   p_joint 1.738043e-03

Joint ci ratio: 5.678664e-02	ci left: 1.668554e-03	ci right 1.766427e-03	k: 4756	n:2770000
Cons ci ratio: 1.180616e-01	ci left: 3.743429e-04	ci right 4.216576e-04	k: 1101	n:2770000
KS ci ratio: 4.082895e-03	ci left: 2.491781e-01	ci right 2.501979e-01	k: 691635	n:2770000
NHS   2770000 perm   4079 sec   (679 perm/sec)   p_kst 2.496877e-01   p_cons 3.974729e-04   p_joint 1.716968e-03

Joint ci ratio: 5.668545e-02	ci left: 1.668580e-03	ci right 1.766275e-03	k: 4773	n:2780000
Cons ci ratio: 1.177947e-01	ci left: 3.747419e-04	ci right 4.219924e-04	k: 1106	n:2780000
KS ci ratio: 4.075540e-03	ci left: 2.491794e-01	ci right 2.501974e-01	k: 694133	n:2780000
NHS   2780000 perm   4104 sec   (677 perm/sec)   p_kst 2.496881e-01   p_cons 3.978417e-04   p_joint 1.716906e-03

Joint ci ratio: 5.657887e-02	ci left: 1.668960e-03	ci right 1.766488e-03	k: 4791	n:2790000
Cons ci ratio: 1.176354e-01	ci left: 3.744423e-04	ci right 4.215868e-04	k: 1109	n:2790000
KS ci ratio: 4.068276e-03	ci left: 2.491761e-01	ci right 2.501922e-01	k: 696618	n:2790000
NHS   2790000 perm   4131 sec   (675 perm/sec)   p_kst 2.496839e-01   p_cons 3.974910e-04   p_joint 1.717204e-03

Joint ci ratio: 5.667390e-02	ci left: 1.657366e-03	ci right 1.754384e-03	k: 4775	n:2800000
Cons ci ratio: 1.175825e-01	ci left: 3.734517e-04	ci right 4.204488e-04	k: 1110	n:2800000
KS ci ratio: 4.061221e-03	ci left: 2.491570e-01	ci right 2.501713e-01	k: 699059	n:2800000
NHS   2800000 perm   4158 sec   (673 perm/sec)   p_kst 2.496639e-01   p_cons 3.964286e-04   p_joint 1.705357e-03

Joint ci ratio: 5.657922e-02	ci left: 1.657081e-03	ci right 1.753915e-03	k: 4791	n:2810000
Cons ci ratio: 1.173714e-01	ci left: 3.735043e-04	ci right 4.204178e-04	k: 1114	n:2810000
KS ci ratio: 4.053925e-03	ci left: 2.491638e-01	ci right 2.501762e-01	k: 701572	n:2810000
NHS   2810000 perm   4184 sec   (672 perm/sec)   p_kst 2.496698e-01   p_cons 3.964413e-04   p_joint 1.704982e-03

Joint ci ratio: 5.651445e-02	ci left: 1.655050e-03	ci right 1.751651e-03	k: 4802	n:2820000
Cons ci ratio: 1.173715e-01	ci left: 3.721798e-04	ci right 4.189270e-04	k: 1114	n:2820000
KS ci ratio: 4.046619e-03	ci left: 2.491751e-01	ci right 2.501857e-01	k: 704098	n:2820000
NHS   2820000 perm   4211 sec   (670 perm/sec)   p_kst 2.496801e-01   p_cons 3.950355e-04   p_joint 1.702837e-03

Joint ci ratio: 5.747557e-02	ci left: 1.593817e-03	ci right 1.688479e-03	k: 4643	n:2830000
Cons ci ratio: 1.171615e-01	ci left: 3.722367e-04	ci right 4.189016e-04	k: 1118	n:2830000
KS ci ratio: 4.039481e-03	ci left: 2.491742e-01	ci right 2.501832e-01	k: 706590	n:2830000
NHS   2830000 perm   4238 sec   (668 perm/sec)   p_kst 2.496784e-01   p_cons 3.950530e-04   p_joint 1.640636e-03

Joint ci ratio: 5.733370e-02	ci left: 1.596188e-03	ci right 1.690748e-03	k: 4666	n:2840000
Cons ci ratio: 1.169006e-01	ci left: 3.726350e-04	ci right 4.192386e-04	k: 1123	n:2840000
KS ci ratio: 4.032366e-03	ci left: 2.491749e-01	ci right 2.501820e-01	k: 709086	n:2840000
NHS   2840000 perm   4265 sec   (666 perm/sec)   p_kst 2.496782e-01   p_cons 3.954225e-04   p_joint 1.642958e-03

Joint ci ratio: 6.022016e-02	ci left: 1.439848e-03	ci right 1.529591e-03	k: 4230	n:2850000
Cons ci ratio: 1.165898e-01	ci left: 3.733713e-04	ci right 4.199343e-04	k: 1129	n:2850000
KS ci ratio: 4.025243e-03	ci left: 2.491797e-01	ci right 2.501850e-01	k: 711594	n:2850000
NHS   2850000 perm   4291 sec   (664 perm/sec)   p_kst 2.496821e-01   p_cons 3.961404e-04   p_joint 1.484211e-03

Joint ci ratio: 6.012078e-02	ci left: 1.439635e-03	ci right 1.529211e-03	k: 4244	n:2860000
Cons ci ratio: 1.163840e-01	ci left: 3.734237e-04	ci right 4.199054e-04	k: 1133	n:2860000
KS ci ratio: 4.018046e-03	ci left: 2.491949e-01	ci right 2.501986e-01	k: 714132	n:2860000
NHS   2860000 perm   4318 sec   (662 perm/sec)   p_kst 2.496965e-01   p_cons 3.961538e-04   p_joint 1.483916e-03

Joint ci ratio: 6.074026e-02	ci left: 1.405106e-03	ci right 1.493466e-03	k: 4158	n:2870000
Cons ci ratio: 1.160773e-01	ci left: 3.741523e-04	ci right 4.205936e-04	k: 1139	n:2870000
KS ci ratio: 4.010954e-03	ci left: 2.492038e-01	ci right 2.502057e-01	k: 716652	n:2870000
NHS   2870000 perm   4345 sec   (660 perm/sec)   p_kst 2.497045e-01   p_cons 3.968641e-04   p_joint 1.448780e-03

Joint ci ratio: 6.061647e-02	ci left: 1.406040e-03	ci right 1.494273e-03	k: 4175	n:2880000
Cons ci ratio: 1.159249e-01	ci left: 3.738646e-04	ci right 4.202051e-04	k: 1142	n:2880000
KS ci ratio: 4.004140e-03	ci left: 2.491901e-01	ci right 2.501902e-01	k: 719107	n:2880000
NHS   2880000 perm   4372 sec   (659 perm/sec)   p_kst 2.496899e-01   p_cons 3.965278e-04   p_joint 1.449653e-03

Joint ci ratio: 6.067485e-02	ci left: 1.398449e-03	ci right 1.486292e-03	k: 4167	n:2890000
Cons ci ratio: 1.156218e-01	ci left: 3.745870e-04	ci right 4.208873e-04	k: 1148	n:2890000
KS ci ratio: 3.997262e-03	ci left: 2.491858e-01	ci right 2.501842e-01	k: 721589	n:2890000
NHS   2890000 perm   4399 sec   (657 perm/sec)   p_kst 2.496848e-01   p_cons 3.972318e-04   p_joint 1.441869e-03

Joint ci ratio: 6.056596e-02	ci left: 1.398720e-03	ci right 1.486418e-03	k: 4182	n:2900000
Cons ci ratio: 1.153210e-01	ci left: 3.753045e-04	ci right 4.215647e-04	k: 1154	n:2900000
KS ci ratio: 3.990257e-03	ci left: 2.491967e-01	ci right 2.501934e-01	k: 724115	n:2900000
NHS   2900000 perm   4426 sec   (655 perm/sec)   p_kst 2.496948e-01   p_cons 3.979310e-04   p_joint 1.442069e-03

Joint ci ratio: 6.045765e-02	ci left: 1.398991e-03	ci right 1.486542e-03	k: 4197	n:2910000
Cons ci ratio: 1.151219e-01	ci left: 3.753498e-04	ci right 4.215302e-04	k: 1158	n:2910000
KS ci ratio: 3.983537e-03	ci left: 2.491842e-01	ci right 2.501792e-01	k: 726573	n:2910000
NHS   2910000 perm   4453 sec   (654 perm/sec)   p_kst 2.496814e-01   p_cons 3.979381e-04   p_joint 1.442268e-03

Joint ci ratio: 6.125196e-02	ci left: 1.357775e-03	ci right 1.443904e-03	k: 4089	n:2920000
Cons ci ratio: 1.148250e-01	ci left: 3.760601e-04	ci right 4.222004e-04	k: 1164	n:2920000
KS ci ratio: 3.976848e-03	ci left: 2.491721e-01	ci right 2.501654e-01	k: 729032	n:2920000
NHS   2920000 perm   4480 sec   (652 perm/sec)   p_kst 2.496685e-01   p_cons 3.986301e-04   p_joint 1.400342e-03

Joint ci ratio: 6.116232e-02	ci left: 1.357174e-03	ci right 1.443134e-03	k: 4101	n:2930000
Cons ci ratio: 1.146774e-01	ci left: 3.757711e-04	ci right 4.218127e-04	k: 1167	n:2930000
KS ci ratio: 3.970116e-03	ci left: 2.491673e-01	ci right 2.501588e-01	k: 731512	n:2930000
NHS   2930000 perm   4507 sec   (650 perm/sec)   p_kst 2.496628e-01   p_cons 3.982935e-04   p_joint 1.399659e-03

Joint ci ratio: 6.109538e-02	ci left: 1.355572e-03	ci right 1.441333e-03	k: 4110	n:2940000
Cons ci ratio: 1.144816e-01	ci left: 3.758145e-04	ci right 4.217775e-04	k: 1171	n:2940000
KS ci ratio: 3.963044e-03	ci left: 2.491978e-01	ci right 2.501877e-01	k: 734096	n:2940000
NHS   2940000 perm   4534 sec   (648 perm/sec)   p_kst 2.496925e-01   p_cons 3.982993e-04   p_joint 1.397959e-03

Joint ci ratio: 6.096203e-02	ci left: 1.356986e-03	ci right 1.442642e-03	k: 4128	n:2950000
Cons ci ratio: 1.142381e-01	ci left: 3.761870e-04	ci right 4.220911e-04	k: 1176	n:2950000
KS ci ratio: 3.956206e-03	ci left: 2.492095e-01	ci right 2.501977e-01	k: 736625	n:2950000
NHS   2950000 perm   4562 sec   (647 perm/sec)   p_kst 2.497034e-01   p_cons 3.986441e-04   p_joint 1.399322e-03

Joint ci ratio: 6.088102e-02	ci left: 1.356061e-03	ci right 1.441541e-03	k: 4139	n:2960000
Cons ci ratio: 1.139962e-01	ci left: 3.765571e-04	ci right 4.224025e-04	k: 1181	n:2960000
KS ci ratio: 3.949639e-03	ci left: 2.491989e-01	ci right 2.501854e-01	k: 739088	n:2960000
NHS   2960000 perm   4589 sec   (645 perm/sec)   p_kst 2.496919e-01   p_cons 3.989865e-04   p_joint 1.398311e-03

Joint ci ratio: 6.081500e-02	ci left: 1.354479e-03	ci right 1.439764e-03	k: 4148	n:2970000
Cons ci ratio: 1.139000e-01	ci left: 3.759434e-04	ci right 4.216729e-04	k: 1183	n:2970000
KS ci ratio: 3.942920e-03	ci left: 2.492058e-01	ci right 2.501907e-01	k: 741603	n:2970000
NHS   2970000 perm   4617 sec   (643 perm/sec)   p_kst 2.496980e-01   p_cons 3.983165e-04   p_joint 1.396633e-03

Joint ci ratio: 6.085923e-02	ci left: 1.347951e-03	ci right 1.432889e-03	k: 4142	n:2980000
Cons ci ratio: 1.136602e-01	ci left: 3.763120e-04	ci right 4.219834e-04	k: 1188	n:2980000
KS ci ratio: 3.936179e-03	ci left: 2.492180e-01	ci right 2.502012e-01	k: 744134	n:2980000
NHS   2980000 perm   4645 sec   (642 perm/sec)   p_kst 2.497094e-01   p_cons 3.986577e-04   p_joint 1.389933e-03

Joint ci ratio: 6.079328e-02	ci left: 1.346407e-03	ci right 1.431152e-03	k: 4151	n:2990000
Cons ci ratio: 1.135171e-01	ci left: 3.760282e-04	ci right 4.216040e-04	k: 1191	n:2990000
KS ci ratio: 3.929802e-03	ci left: 2.491988e-01	ci right 2.501803e-01	k: 746571	n:2990000
NHS   2990000 perm   4673 sec   (640 perm/sec)   p_kst 2.496893e-01   p_cons 3.983278e-04   p_joint 1.388294e-03

Joint ci ratio: 6.072755e-02	ci left: 1.344873e-03	ci right 1.429427e-03	k: 4160	n:3000000
Cons ci ratio: 1.133745e-01	ci left: 3.757464e-04	ci right 4.212270e-04	k: 1194	n:3000000
KS ci ratio: 3.923491e-03	ci left: 2.491763e-01	ci right 2.501562e-01	k: 748998	n:3000000
NHS   3000000 perm   4701 sec   (638 perm/sec)   p_kst 2.496660e-01   p_cons 3.980000e-04   p_joint 1.386667e-03

Joint ci ratio: 6.060384e-02	ci left: 1.345967e-03	ci right 1.430412e-03	k: 4177	n:3010000
Cons ci ratio: 1.131381e-01	ci left: 3.761122e-04	ci right 4.215357e-04	k: 1199	n:3010000
KS ci ratio: 3.917071e-03	ci left: 2.491673e-01	ci right 2.501455e-01	k: 751465	n:3010000
NHS   3010000 perm   4729 sec   (637 perm/sec)   p_kst 2.496561e-01   p_cons 3.983389e-04   p_joint 1.387708e-03

Joint ci ratio: 6.050979e-02	ci left: 1.345750e-03	ci right 1.430045e-03	k: 4190	n:3020000
Cons ci ratio: 1.129969e-01	ci left: 3.758320e-04	ci right 4.211614e-04	k: 1202	n:3020000
KS ci ratio: 3.910921e-03	ci left: 2.491355e-01	ci right 2.501120e-01	k: 753863	n:3020000
NHS   3020000 perm   4757 sec   (635 perm/sec)   p_kst 2.496235e-01   p_cons 3.980132e-04   p_joint 1.387417e-03

Joint ci ratio: 6.042336e-02	ci left: 1.345209e-03	ci right 1.429346e-03	k: 4202	n:3030000
Cons ci ratio: 1.126696e-01	ci left: 3.768367e-04	ci right 4.221468e-04	k: 1209	n:3030000
KS ci ratio: 3.904298e-03	ci left: 2.491520e-01	ci right 2.501270e-01	k: 756407	n:3030000
NHS   3030000 perm   4786 sec   (633 perm/sec)   p_kst 2.496393e-01   p_cons 3.990099e-04   p_joint 1.386799e-03

Joint ci ratio: 6.048839e-02	ci left: 1.337868e-03	ci right 1.421639e-03	k: 4193	n:3040000
Cons ci ratio: 1.125302e-01	ci left: 3.765562e-04	ci right 4.217728e-04	k: 1212	n:3040000
KS ci ratio: 3.897862e-03	ci left: 2.491537e-01	ci right 2.501271e-01	k: 758906	n:3040000
NHS   3040000 perm   4814 sec   (631 perm/sec)   p_kst 2.496401e-01   p_cons 3.986842e-04   p_joint 1.379276e-03

Joint ci ratio: 6.085284e-02	ci left: 1.317337e-03	ci right 1.400336e-03	k: 4143	n:3050000
Cons ci ratio: 1.123451e-01	ci left: 3.765961e-04	ci right 4.217383e-04	k: 1216	n:3050000
KS ci ratio: 3.891315e-03	ci left: 2.491691e-01	ci right 2.501409e-01	k: 761447	n:3050000
NHS   3050000 perm   4843 sec   (630 perm/sec)   p_kst 2.496548e-01   p_cons 3.986885e-04   p_joint 1.358361e-03

Joint ci ratio: 6.077227e-02	ci left: 1.316572e-03	ci right 1.399409e-03	k: 4154	n:3060000
Cons ci ratio: 1.121150e-01	ci left: 3.769536e-04	ci right 4.220399e-04	k: 1221	n:3060000
KS ci ratio: 3.885041e-03	ci left: 2.491612e-01	ci right 2.501314e-01	k: 763917	n:3060000
NHS   3060000 perm   4871 sec   (628 perm/sec)   p_kst 2.496461e-01   p_cons 3.990196e-04   p_joint 1.357516e-03

Joint ci ratio: 6.069930e-02	ci left: 1.315491e-03	ci right 1.398158e-03	k: 4164	n:3070000
Cons ci ratio: 1.119776e-01	ci left: 3.766755e-04	ci right 4.216697e-04	k: 1224	n:3070000
KS ci ratio: 3.878609e-03	ci left: 2.491716e-01	ci right 2.501402e-01	k: 766443	n:3070000
NHS   3070000 perm   4901 sec   (626 perm/sec)   p_kst 2.496557e-01   p_cons 3.986971e-04   p_joint 1.356352e-03

Joint ci ratio: 6.070673e-02	ci left: 1.310900e-03	ci right 1.393289e-03	k: 4163	n:3080000
Cons ci ratio: 1.117953e-01	ci left: 3.767149e-04	ci right 4.216357e-04	k: 1228	n:3080000
KS ci ratio: 3.872367e-03	ci left: 2.491667e-01	ci right 2.501338e-01	k: 768922	n:3080000
NHS   3080000 perm   4930 sec   (625 perm/sec)   p_kst 2.496500e-01   p_cons 3.987013e-04   p_joint 1.351623e-03

Joint ci ratio: 6.128434e-02	ci left: 1.281799e-03	ci right 1.363153e-03	k: 4085	n:3090000
Cons ci ratio: 1.117499e-01	ci left: 3.758103e-04	ci right 4.206039e-04	k: 1229	n:3090000
KS ci ratio: 3.866094e-03	ci left: 2.491677e-01	ci right 2.501331e-01	k: 771419	n:3090000
NHS   3090000 perm   4959 sec   (623 perm/sec)   p_kst 2.496502e-01   p_cons 3.977346e-04   p_joint 1.322006e-03

Joint ci ratio: 6.114229e-02	ci left: 1.283700e-03	ci right 1.364978e-03	k: 4104	n:3100000
Cons ci ratio: 1.115686e-01	ci left: 3.758523e-04	ci right 4.205734e-04	k: 1233	n:3100000
KS ci ratio: 3.859901e-03	ci left: 2.491638e-01	ci right 2.501277e-01	k: 773901	n:3100000
NHS   3100000 perm   4988 sec   (622 perm/sec)   p_kst 2.496455e-01   p_cons 3.977419e-04   p_joint 1.323871e-03

Joint ci ratio: 6.103087e-02	ci left: 1.284322e-03	ci right 1.365486e-03	k: 4119	n:3110000
Cons ci ratio: 1.114332e-01	ci left: 3.755815e-04	ci right 4.202126e-04	k: 1236	n:3110000
KS ci ratio: 3.853653e-03	ci left: 2.491682e-01	ci right 2.501306e-01	k: 776409	n:3110000
NHS   3110000 perm   5017 sec   (620 perm/sec)   p_kst 2.496492e-01   p_cons 3.974277e-04   p_joint 1.324437e-03

Joint ci ratio: 6.100135e-02	ci left: 1.281468e-03	ci right 1.362411e-03	k: 4123	n:3120000
Cons ci ratio: 1.112087e-01	ci left: 3.759357e-04	ci right 4.205129e-04	k: 1241	n:3120000
KS ci ratio: 3.847421e-03	ci left: 2.491740e-01	ci right 2.501348e-01	k: 778921	n:3120000
NHS   3120000 perm   5045 sec   (618 perm/sec)   p_kst 2.496542e-01   p_cons 3.977564e-04   p_joint 1.321474e-03

Joint ci ratio: 6.140536e-02	ci left: 1.260385e-03	ci right 1.340543e-03	k: 4069	n:3130000
Cons ci ratio: 1.110746e-01	ci left: 3.756664e-04	ci right 4.201546e-04	k: 1244	n:3130000
KS ci ratio: 3.841462e-03	ci left: 2.491561e-01	ci right 2.501153e-01	k: 781359	n:3130000
NHS   3130000 perm   5075 sec   (617 perm/sec)   p_kst 2.496355e-01   p_cons 3.974441e-04   p_joint 1.300000e-03

Joint ci ratio: 6.131504e-02	ci left: 1.260134e-03	ci right 1.340154e-03	k: 4081	n:3140000
Cons ci ratio: 1.108966e-01	ci left: 3.757086e-04	ci right 4.201257e-04	k: 1248	n:3140000
KS ci ratio: 3.835357e-03	ci left: 2.491551e-01	ci right 2.501129e-01	k: 783850	n:3140000
NHS   3140000 perm   5104 sec   (615 perm/sec)   p_kst 2.496338e-01   p_cons 3.974522e-04   p_joint 1.299682e-03

Joint ci ratio: 6.130765e-02	ci left: 1.256446e-03	ci right 1.336222e-03	k: 4082	n:3150000
Cons ci ratio: 1.106312e-01	ci left: 3.763678e-04	ci right 4.207495e-04	k: 1254	n:3150000
KS ci ratio: 3.829464e-03	ci left: 2.491364e-01	ci right 2.500926e-01	k: 786285	n:3150000
NHS   3150000 perm   5133 sec   (614 perm/sec)   p_kst 2.496143e-01   p_cons 3.980952e-04   p_joint 1.295873e-03

Joint ci ratio: 6.121776e-02	ci left: 1.256209e-03	ci right 1.335849e-03	k: 4094	n:3160000
Cons ci ratio: 1.105432e-01	ci left: 3.757922e-04	ci right 4.200684e-04	k: 1256	n:3160000
KS ci ratio: 3.823629e-03	ci left: 2.491147e-01	ci right 2.500693e-01	k: 788710	n:3160000
NHS   3160000 perm   5163 sec   (612 perm/sec)   p_kst 2.495918e-01   p_cons 3.974684e-04   p_joint 1.295570e-03

Joint ci ratio: 6.176397e-02	ci left: 1.229882e-03	ci right 1.308573e-03	k: 4022	n:3170000
Cons ci ratio: 1.104115e-01	ci left: 3.755269e-04	ci right 4.197158e-04	k: 1259	n:3170000
KS ci ratio: 3.817571e-03	ci left: 2.491177e-01	ci right 2.500708e-01	k: 791213	n:3170000
NHS   3170000 perm   5193 sec   (610 perm/sec)   p_kst 2.495940e-01   p_cons 3.971609e-04   p_joint 1.268770e-03

Joint ci ratio: 6.165677e-02	ci left: 1.230349e-03	ci right 1.308928e-03	k: 4036	n:3180000
Cons ci ratio: 1.103240e-01	ci left: 3.749576e-04	ci right 4.190422e-04	k: 1261	n:3180000
KS ci ratio: 3.811580e-03	ci left: 2.491169e-01	ci right 2.500685e-01	k: 793704	n:3180000
NHS   3180000 perm   5223 sec   (609 perm/sec)   p_kst 2.495925e-01   p_cons 3.965409e-04   p_joint 1.269182e-03

Joint ci ratio: 6.155773e-02	ci left: 1.230505e-03	ci right 1.308963e-03	k: 4049	n:3190000
Cons ci ratio: 1.102368e-01	ci left: 3.743919e-04	ci right 4.183729e-04	k: 1263	n:3190000
KS ci ratio: 3.805549e-03	ci left: 2.491226e-01	ci right 2.500728e-01	k: 796216	n:3190000
NHS   3190000 perm   5252 sec   (607 perm/sec)   p_kst 2.495975e-01   p_cons 3.959248e-04   p_joint 1.269279e-03

Joint ci ratio: 6.145917e-02	ci left: 1.230659e-03	ci right 1.308998e-03	k: 4062	n:3200000
Cons ci ratio: 1.101497e-01	ci left: 3.738296e-04	ci right 4.177077e-04	k: 1265	n:3200000
KS ci ratio: 3.799538e-03	ci left: 2.491293e-01	ci right 2.500780e-01	k: 798731	n:3200000
NHS   3200000 perm   5282 sec   (606 perm/sec)   p_kst 2.496034e-01   p_cons 3.953125e-04   p_joint 1.269375e-03

Joint ci ratio: 6.145172e-02	ci left: 1.227132e-03	ci right 1.305236e-03	k: 4063	n:3210000
Cons ci ratio: 1.099761e-01	ci left: 3.738769e-04	ci right 4.176868e-04	k: 1269	n:3210000
KS ci ratio: 3.793414e-03	ci left: 2.491500e-01	ci right 2.500972e-01	k: 801291	n:3210000
NHS   3210000 perm   5312 sec   (604 perm/sec)   p_kst 2.496234e-01   p_cons 3.953271e-04   p_joint 1.265732e-03

Joint ci ratio: 6.140647e-02	ci left: 1.225156e-03	ci right 1.303075e-03	k: 4069	n:3220000
Cons ci ratio: 1.098464e-01	ci left: 3.736218e-04	ci right 4.173469e-04	k: 1272	n:3220000
KS ci ratio: 3.787535e-03	ci left: 2.491491e-01	ci right 2.500948e-01	k: 803782	n:3220000
NHS   3220000 perm   5342 sec   (603 perm/sec)   p_kst 2.496217e-01   p_cons 3.950311e-04   p_joint 1.263665e-03

Joint ci ratio: 6.132367e-02	ci left: 1.224716e-03	ci right 1.302498e-03	k: 4080	n:3230000
Cons ci ratio: 1.097172e-01	ci left: 3.733684e-04	ci right 4.170091e-04	k: 1275	n:3230000
KS ci ratio: 3.781571e-03	ci left: 2.491593e-01	ci right 2.501036e-01	k: 806309	n:3230000
NHS   3230000 perm   5372 sec   (601 perm/sec)   p_kst 2.496313e-01   p_cons 3.947368e-04   p_joint 1.263158e-03

Joint ci ratio: 6.126370e-02	ci left: 1.223367e-03	ci right 1.300985e-03	k: 4088	n:3240000
Cons ci ratio: 1.094175e-01	ci left: 3.743173e-04	ci right 4.179417e-04	k: 1282	n:3240000
KS ci ratio: 3.775866e-03	ci left: 2.491467e-01	ci right 2.500895e-01	k: 808762	n:3240000
NHS   3240000 perm   5402 sec   (600 perm/sec)   p_kst 2.496179e-01   p_cons 3.956790e-04   p_joint 1.261728e-03

Joint ci ratio: 5.452227e-02	ci left: 1.544697e-03	ci right 1.631579e-03	k: 5160	n:3250000
Cons ci ratio: 1.091625e-01	ci left: 3.749613e-04	ci right 4.185523e-04	k: 1288	n:3250000
KS ci ratio: 3.769997e-03	ci left: 2.491529e-01	ci right 2.500943e-01	k: 811276	n:3250000
NHS   3250000 perm   5432 sec   (598 perm/sec)   p_kst 2.496234e-01   p_cons 3.963077e-04   p_joint 1.587692e-03

Joint ci ratio: 5.466048e-02	ci left: 1.532092e-03	ci right 1.618490e-03	k: 5134	n:3260000
Cons ci ratio: 1.089093e-01	ci left: 3.756014e-04	ci right 4.191591e-04	k: 1294	n:3260000
KS ci ratio: 3.764193e-03	ci left: 2.491554e-01	ci right 2.500953e-01	k: 813778	n:3260000
NHS   3260000 perm   5462 sec   (597 perm/sec)   p_kst 2.496252e-01   p_cons 3.969325e-04   p_joint 1.574847e-03

Joint ci ratio: 5.563488e-02	ci left: 1.473722e-03	ci right 1.558357e-03	k: 4956	n:3270000
Cons ci ratio: 1.087834e-01	ci left: 3.753452e-04	ci right 4.188197e-04	k: 1297	n:3270000
KS ci ratio: 3.758415e-03	ci left: 2.491579e-01	ci right 2.500964e-01	k: 816280	n:3270000
NHS   3270000 perm   5492 sec   (595 perm/sec)   p_kst 2.496269e-01   p_cons 3.966361e-04   p_joint 1.515596e-03

Joint ci ratio: 5.619409e-02	ci left: 1.439768e-03	ci right 1.523311e-03	k: 4858	n:3280000
Cons ci ratio: 1.086579e-01	ci left: 3.750906e-04	ci right 4.184823e-04	k: 1300	n:3280000
KS ci ratio: 3.752859e-03	ci left: 2.491408e-01	ci right 2.500779e-01	k: 818718	n:3280000
NHS   3280000 perm   5522 sec   (594 perm/sec)   p_kst 2.496091e-01   p_cons 3.963415e-04   p_joint 1.481098e-03

Joint ci ratio: 5.613639e-02	ci left: 1.438388e-03	ci right 1.521763e-03	k: 4868	n:3290000
Cons ci ratio: 1.085745e-01	ci left: 3.745419e-04	ci right 4.178347e-04	k: 1302	n:3290000
KS ci ratio: 3.747079e-03	ci left: 2.491488e-01	ci right 2.500844e-01	k: 821238	n:3290000
NHS   3290000 perm   5553 sec   (592 perm/sec)   p_kst 2.496164e-01   p_cons 3.957447e-04   p_joint 1.479635e-03

Joint ci ratio: 5.657458e-02	ci left: 1.411622e-03	ci right 1.494105e-03	k: 4793	n:3300000
Cons ci ratio: 1.084913e-01	ci left: 3.739965e-04	ci right 4.171910e-04	k: 1304	n:3300000
KS ci ratio: 3.741473e-03	ci left: 2.491419e-01	ci right 2.500761e-01	k: 823709	n:3300000
NHS   3300000 perm   5584 sec   (591 perm/sec)   p_kst 2.496088e-01   p_cons 3.951515e-04   p_joint 1.452424e-03

Joint ci ratio: 5.669920e-02	ci left: 1.401103e-03	ci right 1.483157e-03	k: 4772	n:3310000
Cons ci ratio: 1.082840e-01	ci left: 3.743363e-04	ci right 4.174822e-04	k: 1309	n:3310000
KS ci ratio: 3.735640e-03	ci left: 2.491604e-01	ci right 2.500932e-01	k: 826264	n:3310000
NHS   3310000 perm   5615 sec   (590 perm/sec)   p_kst 2.496266e-01   p_cons 3.954683e-04   p_joint 1.441692e-03

Joint ci ratio: 5.665773e-02	ci left: 1.398961e-03	ci right 1.480828e-03	k: 4779	n:3320000
Cons ci ratio: 1.082428e-01	ci left: 3.735018e-04	ci right 4.165340e-04	k: 1310	n:3320000
KS ci ratio: 3.729744e-03	ci left: 2.491878e-01	ci right 2.501192e-01	k: 828849	n:3320000
NHS   3320000 perm   5646 sec   (588 perm/sec)   p_kst 2.496533e-01   p_cons 3.945783e-04   p_joint 1.439458e-03

Joint ci ratio: 5.659860e-02	ci left: 1.397720e-03	ci right 1.479427e-03	k: 4789	n:3330000
Cons ci ratio: 1.080780e-01	ci left: 3.735489e-04	ci right 4.165169e-04	k: 1314	n:3330000
KS ci ratio: 3.724251e-03	ci left: 2.491773e-01	ci right 2.501073e-01	k: 831308	n:3330000
NHS   3330000 perm   5676 sec   (587 perm/sec)   p_kst 2.496420e-01   p_cons 3.945946e-04   p_joint 1.438138e-03

Joint ci ratio: 5.459235e-02	ci left: 1.499234e-03	ci right 1.583670e-03	k: 5147	n:3340000
Cons ci ratio: 1.079960e-01	ci left: 3.730131e-04	ci right 4.158848e-04	k: 1316	n:3340000
KS ci ratio: 3.718759e-03	ci left: 2.491691e-01	ci right 2.500978e-01	k: 833775	n:3340000
NHS   3340000 perm   5707 sec   (585 perm/sec)   p_kst 2.496332e-01   p_cons 3.940120e-04   p_joint 1.541018e-03

Joint ci ratio: 5.453415e-02	ci left: 1.497997e-03	ci right 1.582271e-03	k: 5158	n:3350000
Cons ci ratio: 1.078732e-01	ci left: 3.727710e-04	ci right 4.155630e-04	k: 1319	n:3350000
KS ci ratio: 3.713093e-03	ci left: 2.491811e-01	ci right 2.501083e-01	k: 836309	n:3350000
NHS   3350000 perm   5739 sec   (584 perm/sec)   p_kst 2.496445e-01   p_cons 3.937313e-04   p_joint 1.539701e-03

Joint ci ratio: 5.443924e-02	ci left: 1.498823e-03	ci right 1.582992e-03	k: 5176	n:3360000
Cons ci ratio: 1.077508e-01	ci left: 3.725303e-04	ci right 4.152432e-04	k: 1322	n:3360000
KS ci ratio: 3.707612e-03	ci left: 2.491769e-01	ci right 2.501027e-01	k: 838789	n:3360000
NHS   3360000 perm   5771 sec   (582 perm/sec)   p_kst 2.496396e-01   p_cons 3.934524e-04   p_joint 1.540476e-03

Joint ci ratio: 5.439729e-02	ci left: 1.496717e-03	ci right 1.580701e-03	k: 5184	n:3370000
Cons ci ratio: 1.077509e-01	ci left: 3.714249e-04	ci right 4.140110e-04	k: 1322	n:3370000
KS ci ratio: 3.702123e-03	ci left: 2.491760e-01	ci right 2.501004e-01	k: 841280	n:3370000
NHS   3370000 perm   5803 sec   (581 perm/sec)   p_kst 2.496380e-01   p_cons 3.922849e-04   p_joint 1.538279e-03

Joint ci ratio: 5.430309e-02	ci left: 1.497542e-03	ci right 1.581422e-03	k: 5202	n:3380000
Cons ci ratio: 1.075478e-01	ci left: 3.717654e-04	ci right 4.143052e-04	k: 1327	n:3380000
KS ci ratio: 3.696550e-03	ci left: 2.491860e-01	ci right 2.501091e-01	k: 843808	n:3380000
NHS   3380000 perm   5835 sec   (579 perm/sec)   p_kst 2.496473e-01   p_cons 3.926036e-04   p_joint 1.539053e-03

Joint ci ratio: 5.420938e-02	ci left: 1.498362e-03	ci right 1.582139e-03	k: 5220	n:3390000
Cons ci ratio: 1.073057e-01	ci left: 3.723911e-04	ci right 4.149005e-04	k: 1333	n:3390000
KS ci ratio: 3.691078e-03	ci left: 2.491883e-01	ci right 2.501101e-01	k: 846310	n:3390000
NHS   3390000 perm   5867 sec   (578 perm/sec)   p_kst 2.496490e-01   p_cons 3.932153e-04   p_joint 1.539823e-03

Joint ci ratio: 5.412133e-02	ci left: 1.498887e-03	ci right 1.582553e-03	k: 5237	n:3400000
Cons ci ratio: 1.072655e-01	ci left: 3.715821e-04	ci right 4.139823e-04	k: 1334	n:3400000
KS ci ratio: 3.685763e-03	ci left: 2.491771e-01	ci right 2.500975e-01	k: 848766	n:3400000
NHS   3400000 perm   5899 sec   (576 perm/sec)   p_kst 2.496371e-01   p_cons 3.923529e-04   p_joint 1.540294e-03

Joint ci ratio: 5.403371e-02	ci left: 1.499410e-03	ci right 1.582965e-03	k: 5254	n:3410000
Cons ci ratio: 1.071452e-01	ci left: 3.713486e-04	ci right 4.136716e-04	k: 1337	n:3410000
KS ci ratio: 3.680252e-03	ci left: 2.491882e-01	ci right 2.501072e-01	k: 851298	n:3410000
NHS   3410000 perm   5930 sec   (575 perm/sec)   p_kst 2.496475e-01   p_cons 3.920821e-04   p_joint 1.540762e-03

Joint ci ratio: 5.404928e-02	ci left: 1.494160e-03	ci right 1.577448e-03	k: 5251	n:3420000
Cons ci ratio: 1.070253e-01	ci left: 3.711165e-04	ci right 4.133627e-04	k: 1340	n:3420000
KS ci ratio: 3.675024e-03	ci left: 2.491730e-01	ci right 2.500906e-01	k: 853740	n:3420000
NHS   3420000 perm   5962 sec   (574 perm/sec)   p_kst 2.496316e-01   p_cons 3.918129e-04   p_joint 1.535380e-03

Joint ci ratio: 5.399794e-02	ci left: 1.492680e-03	ci right 1.575804e-03	k: 5261	n:3430000
Cons ci ratio: 1.069456e-01	ci left: 3.706020e-04	ci right 4.127562e-04	k: 1342	n:3430000
KS ci ratio: 3.669678e-03	ci left: 2.491721e-01	ci right 2.500884e-01	k: 856231	n:3430000
NHS   3430000 perm   5994 sec   (572 perm/sec)   p_kst 2.496300e-01   p_cons 3.912536e-04   p_joint 1.533819e-03

Joint ci ratio: 5.390580e-02	ci left: 1.493503e-03	ci right 1.576526e-03	k: 5279	n:3440000
Cons ci ratio: 1.067471e-01	ci left: 3.709393e-04	ci right 4.130487e-04	k: 1347	n:3440000
KS ci ratio: 3.664409e-03	ci left: 2.491657e-01	ci right 2.500807e-01	k: 858703	n:3440000
NHS   3440000 perm   6026 sec   (571 perm/sec)   p_kst 2.496230e-01   p_cons 3.915698e-04   p_joint 1.534593e-03

Joint ci ratio: 5.412711e-02	ci left: 1.476878e-03	ci right 1.559325e-03	k: 5236	n:3450000
Cons ci ratio: 1.066285e-01	ci left: 3.707105e-04	ci right 4.127442e-04	k: 1350	n:3450000
KS ci ratio: 3.658957e-03	ci left: 2.491805e-01	ci right 2.500942e-01	k: 861248	n:3450000
NHS   3450000 perm   6058 sec   (570 perm/sec)   p_kst 2.496371e-01   p_cons 3.913043e-04   p_joint 1.517681e-03

Joint ci ratio: 5.407039e-02	ci left: 1.475746e-03	ci right 1.558040e-03	k: 5247	n:3460000
Cons ci ratio: 1.064317e-01	ci left: 3.710456e-04	ci right 4.130349e-04	k: 1355	n:3460000
KS ci ratio: 3.653655e-03	ci left: 2.491822e-01	ci right 2.500945e-01	k: 863748	n:3460000
NHS   3460000 perm   6089 sec   (568 perm/sec)   p_kst 2.496382e-01   p_cons 3.916185e-04   p_joint 1.516474e-03

Joint ci ratio: 5.410666e-02	ci left: 1.469503e-03	ci right 1.551506e-03	k: 5240	n:3470000
Cons ci ratio: 1.063925e-01	ci left: 3.702568e-04	ci right 4.121404e-04	k: 1356	n:3470000
KS ci ratio: 3.648424e-03	ci left: 2.491790e-01	ci right 2.500900e-01	k: 866231	n:3470000
NHS   3470000 perm   6121 sec   (567 perm/sec)   p_kst 2.496343e-01   p_cons 3.907781e-04   p_joint 1.510086e-03

Joint ci ratio: 5.403454e-02	ci left: 1.469249e-03	ci right 1.551125e-03	k: 5254	n:3480000
Cons ci ratio: 1.063142e-01	ci left: 3.697523e-04	ci right 4.115461e-04	k: 1358	n:3480000
KS ci ratio: 3.643017e-03	ci left: 2.491962e-01	ci right 2.501059e-01	k: 868785	n:3480000
NHS   3480000 perm   6153 sec   (566 perm/sec)   p_kst 2.496509e-01   p_cons 3.902299e-04   p_joint 1.509770e-03

Joint ci ratio: 5.403466e-02	ci left: 1.465039e-03	ci right 1.546680e-03	k: 5254	n:3490000
Cons ci ratio: 1.061581e-01	ci left: 3.698085e-04	ci right 4.115435e-04	k: 1362	n:3490000
KS ci ratio: 3.637746e-03	ci left: 2.492019e-01	ci right 2.501103e-01	k: 871299	n:3490000
NHS   3490000 perm   6186 sec   (564 perm/sec)   p_kst 2.496559e-01   p_cons 3.902579e-04   p_joint 1.505444e-03

Joint ci ratio: 5.396796e-02	ci left: 1.464517e-03	ci right 1.546026e-03	k: 5267	n:3500000
Cons ci ratio: 1.060804e-01	ci left: 3.693082e-04	ci right 4.109542e-04	k: 1364	n:3500000
KS ci ratio: 3.632461e-03	ci left: 2.492112e-01	ci right 2.501184e-01	k: 873826	n:3500000
NHS   3500000 perm   6219 sec   (563 perm/sec)   p_kst 2.496646e-01   p_cons 3.897143e-04   p_joint 1.504857e-03

Joint ci ratio: 5.394245e-02	ci left: 1.461750e-03	ci right 1.543065e-03	k: 5272	n:3510000
Cons ci ratio: 1.059253e-01	ci left: 3.693654e-04	ci right 4.109532e-04	k: 1368	n:3510000
KS ci ratio: 3.627243e-03	ci left: 2.492159e-01	ci right 2.501218e-01	k: 876337	n:3510000
NHS   3510000 perm   6251 sec   (562 perm/sec)   p_kst 2.496687e-01   p_cons 3.897436e-04   p_joint 1.501994e-03

Joint ci ratio: 5.388630e-02	ci left: 1.460680e-03	ci right 1.541848e-03	k: 5283	n:3520000
Cons ci ratio: 1.057323e-01	ci left: 3.696989e-04	ci right 4.112438e-04	k: 1373	n:3520000
KS ci ratio: 3.622106e-03	ci left: 2.492147e-01	ci right 2.501193e-01	k: 878827	n:3520000
NHS   3520000 perm   6283 sec   (560 perm/sec)   p_kst 2.496668e-01   p_cons 3.900568e-04   p_joint 1.500852e-03

Joint ci ratio: 5.383033e-02	ci left: 1.459616e-03	ci right 1.540638e-03	k: 5294	n:3530000
Cons ci ratio: 1.055788e-01	ci left: 3.697548e-04	ci right 4.112419e-04	k: 1377	n:3530000
KS ci ratio: 3.617031e-03	ci left: 2.492092e-01	ci right 2.501125e-01	k: 881302	n:3530000
NHS   3530000 perm   6316 sec   (559 perm/sec)   p_kst 2.496606e-01   p_cons 3.900850e-04   p_joint 1.499717e-03

Joint ci ratio: 5.391720e-02	ci left: 1.450755e-03	ci right 1.531420e-03	k: 5277	n:3540000
Cons ci ratio: 1.053877e-01	ci left: 3.700855e-04	ci right 4.115298e-04	k: 1382	n:3540000
KS ci ratio: 3.536007e-03	ci left: 2.572476e-01	ci right 2.581591e-01	k: 912269	n:3540000
NHS   3540000 perm   6348 sec   (558 perm/sec)   p_kst 2.577031e-01   p_cons 3.903955e-04   p_joint 1.490678e-03

Joint ci ratio: 5.394291e-02	ci left: 1.445279e-03	ci right 1.525678e-03	k: 5272	n:3550000
Cons ci ratio: 1.053116e-01	ci left: 3.695915e-04	ci right 4.109488e-04	k: 1384	n:3550000
KS ci ratio: 3.531202e-03	ci left: 2.572288e-01	ci right 2.581390e-01	k: 914777	n:3550000
NHS   3550000 perm   6381 sec   (556 perm/sec)   p_kst 2.576837e-01   p_cons 3.898592e-04   p_joint 1.485070e-03

Joint ci ratio: 5.398405e-02	ci left: 1.439002e-03	ci right 1.519115e-03	k: 5264	n:3560000
Cons ci ratio: 1.053117e-01	ci left: 3.685534e-04	ci right 4.097945e-04	k: 1384	n:3560000
KS ci ratio: 3.526283e-03	ci left: 2.572247e-01	ci right 2.581336e-01	k: 917337	n:3560000
NHS   3560000 perm   6414 sec   (555 perm/sec)   p_kst 2.576789e-01   p_cons 3.887640e-04   p_joint 1.478652e-03

Joint ci ratio: 5.389709e-02	ci left: 1.439669e-03	ci right 1.519686e-03	k: 5281	n:3570000
Cons ci ratio: 1.050843e-01	ci left: 3.691574e-04	ci right 4.103715e-04	k: 1390	n:3570000
KS ci ratio: 3.521268e-03	ci left: 2.572332e-01	ci right 2.581409e-01	k: 919942	n:3570000
NHS   3570000 perm   6447 sec   (554 perm/sec)   p_kst 2.576868e-01   p_cons 3.893557e-04   p_joint 1.479272e-03

Joint ci ratio: 5.381055e-02	ci left: 1.440332e-03	ci right 1.520254e-03	k: 5298	n:3580000
Cons ci ratio: 1.049712e-01	ci left: 3.689423e-04	ci right 4.100852e-04	k: 1393	n:3580000
KS ci ratio: 3.516192e-03	ci left: 2.572506e-01	ci right 2.581570e-01	k: 922579	n:3580000
NHS   3580000 perm   6480 sec   (552 perm/sec)   p_kst 2.577036e-01   p_cons 3.891061e-04   p_joint 1.479888e-03

Joint ci ratio: 5.383610e-02	ci left: 1.434946e-03	ci right 1.514608e-03	k: 5293	n:3590000
Cons ci ratio: 1.048960e-01	ci left: 3.684570e-04	ci right 4.095146e-04	k: 1395	n:3590000
KS ci ratio: 3.511115e-03	ci left: 2.572705e-01	ci right 2.581756e-01	k: 925225	n:3590000
NHS   3590000 perm   6513 sec   (551 perm/sec)   p_kst 2.577228e-01   p_cons 3.885794e-04   p_joint 1.474373e-03

Joint ci ratio: 5.314694e-02	ci left: 1.468782e-03	ci right 1.549246e-03	k: 5431	n:3600000
Cons ci ratio: 1.047086e-01	ci left: 3.687860e-04	ci right 4.098023e-04	k: 1400	n:3600000
KS ci ratio: 3.506297e-03	ci left: 2.572644e-01	ci right 2.581683e-01	k: 927778	n:3600000
NHS   3600000 perm   6546 sec   (550 perm/sec)   p_kst 2.577161e-01   p_cons 3.888889e-04   p_joint 1.508611e-03

Joint ci ratio: 5.311278e-02	ci left: 1.466626e-03	ci right 1.546919e-03	k: 5438	n:3610000
Cons ci ratio: 1.045967e-01	ci left: 3.685737e-04	ci right 4.095199e-04	k: 1403	n:3610000
KS ci ratio: 3.501559e-03	ci left: 2.572517e-01	ci right 2.581543e-01	k: 930307	n:3610000
NHS   3610000 perm   6579 sec   (549 perm/sec)   p_kst 2.577028e-01   p_cons 3.886427e-04   p_joint 1.506371e-03

Joint ci ratio: 5.304457e-02	ci left: 1.466391e-03	ci right 1.546565e-03	k: 5452	n:3620000
Cons ci ratio: 1.044851e-01	ci left: 3.683626e-04	ci right 4.092390e-04	k: 1406	n:3620000
KS ci ratio: 3.496783e-03	ci left: 2.572454e-01	ci right 2.581467e-01	k: 932859	n:3620000
NHS   3620000 perm   6612 sec   (547 perm/sec)   p_kst 2.576959e-01   p_cons 3.883978e-04   p_joint 1.506077e-03

Joint ci ratio: 5.297661e-02	ci left: 1.466157e-03	ci right 1.546212e-03	k: 5466	n:3630000
Cons ci ratio: 1.044110e-01	ci left: 3.678844e-04	ci right 4.086770e-04	k: 1408	n:3630000
KS ci ratio: 3.491893e-03	ci left: 2.572537e-01	ci right 2.581538e-01	k: 935464	n:3630000
NHS   3630000 perm   6645 sec   (546 perm/sec)   p_kst 2.577036e-01   p_cons 3.878788e-04   p_joint 1.505785e-03

Joint ci ratio: 5.308380e-02	ci left: 1.456165e-03	ci right 1.535840e-03	k: 5444	n:3640000
Cons ci ratio: 1.041894e-01	ci left: 3.684791e-04	ci right 4.092456e-04	k: 1414	n:3640000
KS ci ratio: 3.487226e-03	ci left: 2.572398e-01	ci right 2.581386e-01	k: 937988	n:3640000
NHS   3640000 perm   6678 sec   (545 perm/sec)   p_kst 2.576890e-01   p_cons 3.884615e-04   p_joint 1.495604e-03

Joint ci ratio: 5.301569e-02	ci left: 1.455960e-03	ci right 1.535519e-03	k: 5458	n:3650000
Cons ci ratio: 1.040791e-01	ci left: 3.682701e-04	ci right 4.089677e-04	k: 1417	n:3650000
KS ci ratio: 3.482285e-03	ci left: 2.572579e-01	ci right 2.581556e-01	k: 940629	n:3650000
NHS   3650000 perm   6711 sec   (544 perm/sec)   p_kst 2.577066e-01   p_cons 3.882192e-04   p_joint 1.495342e-03

Joint ci ratio: 5.293332e-02	ci left: 1.456565e-03	ci right 1.536030e-03	k: 5475	n:3660000
Cons ci ratio: 1.039326e-01	ci left: 3.683284e-04	ci right 4.089716e-04	k: 1421	n:3660000
KS ci ratio: 3.477364e-03	ci left: 2.572763e-01	ci right 2.581727e-01	k: 943271	n:3660000
NHS   3660000 perm   6745 sec   (543 perm/sec)   p_kst 2.577243e-01   p_cons 3.882514e-04   p_joint 1.495902e-03

Joint ci ratio: 5.297220e-02	ci left: 1.450446e-03	ci right 1.529636e-03	k: 5467	n:3670000
Cons ci ratio: 1.038232e-01	ci left: 3.681209e-04	ci right 4.086959e-04	k: 1424	n:3670000
KS ci ratio: 3.472742e-03	ci left: 2.572638e-01	ci right 2.581590e-01	k: 945800	n:3670000
NHS   3670000 perm   6779 sec   (541 perm/sec)   p_kst 2.577112e-01   p_cons 3.880109e-04   p_joint 1.489646e-03

Joint ci ratio: 5.292386e-02	ci left: 1.449185e-03	ci right 1.528233e-03	k: 5477	n:3680000
Cons ci ratio: 1.035690e-01	ci left: 3.689735e-04	ci right 4.095368e-04	k: 1431	n:3680000
KS ci ratio: 3.467942e-03	ci left: 2.572730e-01	ci right 2.581670e-01	k: 948409	n:3680000
NHS   3680000 perm   6813 sec   (540 perm/sec)   p_kst 2.577198e-01   p_cons 3.888587e-04   p_joint 1.488315e-03

Joint ci ratio: 5.301126e-02	ci left: 1.440445e-03	ci right 1.519149e-03	k: 5459	n:3690000
Cons ci ratio: 1.033168e-01	ci left: 3.698215e-04	ci right 4.103730e-04	k: 1438	n:3690000
KS ci ratio: 3.463292e-03	ci left: 2.572679e-01	ci right 2.581607e-01	k: 950965	n:3690000
NHS   3690000 perm   6848 sec   (539 perm/sec)   p_kst 2.577141e-01   p_cons 3.897019e-04   p_joint 1.479404e-03

Joint ci ratio: 5.291924e-02	ci left: 1.441619e-03	ci right 1.520246e-03	k: 5478	n:3700000
Cons ci ratio: 1.032451e-01	ci left: 3.693485e-04	ci right 4.098184e-04	k: 1440	n:3700000
KS ci ratio: 3.458628e-03	ci left: 2.572663e-01	ci right 2.581579e-01	k: 953534	n:3700000
NHS   3700000 perm   6882 sec   (538 perm/sec)   p_kst 2.577119e-01   p_cons 3.891892e-04   p_joint 1.480541e-03

Joint ci ratio: 5.324638e-02	ci left: 1.419913e-03	ci right 1.497850e-03	k: 5411	n:3710000
Cons ci ratio: 1.030664e-01	ci left: 3.696659e-04	ci right 4.100963e-04	k: 1445	n:3710000
KS ci ratio: 3.454164e-03	ci left: 2.572448e-01	ci right 2.581351e-01	k: 956029	n:3710000
NHS   3710000 perm   6916 sec   (536 perm/sec)   p_kst 2.576898e-01   p_cons 3.894879e-04   p_joint 1.458491e-03

Joint ci ratio: 5.326127e-02	ci left: 1.415300e-03	ci right 1.493006e-03	k: 5408	n:3720000
Cons ci ratio: 1.030308e-01	ci left: 3.689341e-04	ci right 4.092696e-04	k: 1446	n:3720000
KS ci ratio: 3.449474e-03	ci left: 2.572502e-01	ci right 2.581394e-01	k: 958624	n:3720000
NHS   3720000 perm   6951 sec   (535 perm/sec)   p_kst 2.576946e-01   p_cons 3.887097e-04   p_joint 1.453763e-03

Joint ci ratio: 5.316794e-02	ci left: 1.416532e-03	ci right 1.494165e-03	k: 5427	n:3730000
Cons ci ratio: 1.028887e-01	ci left: 3.689898e-04	ci right 4.092723e-04	k: 1450	n:3730000
KS ci ratio: 3.444779e-03	ci left: 2.572583e-01	ci right 2.581463e-01	k: 961229	n:3730000
NHS   3730000 perm   6986 sec   (534 perm/sec)   p_kst 2.577021e-01   p_cons 3.887399e-04   p_joint 1.454960e-03

Joint ci ratio: 5.307510e-02	ci left: 1.417757e-03	ci right 1.495318e-03	k: 5446	n:3740000
Cons ci ratio: 1.027119e-01	ci left: 3.693057e-04	ci right 4.095493e-04	k: 1455	n:3740000
KS ci ratio: 3.440214e-03	ci left: 2.572541e-01	ci right 2.581409e-01	k: 963788	n:3740000
NHS   3740000 perm   7020 sec   (533 perm/sec)   p_kst 2.576973e-01   p_cons 3.890374e-04   p_joint 1.456150e-03

Joint ci ratio: 5.303135e-02	ci left: 1.416344e-03	ci right 1.493762e-03	k: 5455	n:3750000
Cons ci ratio: 1.026415e-01	ci left: 3.688405e-04	ci right 4.090042e-04	k: 1457	n:3750000
KS ci ratio: 3.435749e-03	ci left: 2.572409e-01	ci right 2.581264e-01	k: 966313	n:3750000
NHS   3750000 perm   7055 sec   (532 perm/sec)   p_kst 2.576835e-01   p_cons 3.885333e-04   p_joint 1.454667e-03

Joint ci ratio: 5.296344e-02	ci left: 1.416252e-03	ci right 1.493562e-03	k: 5469	n:3760000
Cons ci ratio: 1.025712e-01	ci left: 3.683778e-04	ci right 4.084620e-04	k: 1459	n:3760000
KS ci ratio: 3.431191e-03	ci left: 2.572399e-01	ci right 2.581243e-01	k: 968884	n:3760000
NHS   3760000 perm   7090 sec   (530 perm/sec)   p_kst 2.576819e-01   p_cons 3.880319e-04   p_joint 1.454521e-03

Joint ci ratio: 5.285720e-02	ci left: 1.418253e-03	ci right 1.495513e-03	k: 5491	n:3770000
Cons ci ratio: 1.023610e-01	ci left: 3.689514e-04	ci right 4.090108e-04	k: 1465	n:3770000
KS ci ratio: 3.426701e-03	ci left: 2.572334e-01	ci right 2.581166e-01	k: 971434	n:3770000
NHS   3770000 perm   7127 sec   (529 perm/sec)   p_kst 2.576748e-01   p_cons 3.885942e-04   p_joint 1.456499e-03

Joint ci ratio: 5.281399e-02	ci left: 1.416851e-03	ci right 1.493969e-03	k: 5500	n:3780000
Cons ci ratio: 1.022564e-01	ci left: 3.687487e-04	ci right 4.087427e-04	k: 1468	n:3780000
KS ci ratio: 3.422186e-03	ci left: 2.572316e-01	ci right 2.581137e-01	k: 974002	n:3780000
NHS   3780000 perm   7163 sec   (528 perm/sec)   p_kst 2.576725e-01   p_cons 3.883598e-04   p_joint 1.455026e-03

Joint ci ratio: 5.273255e-02	ci left: 1.417539e-03	ci right 1.494572e-03	k: 5517	n:3790000
Cons ci ratio: 1.020482e-01	ci left: 3.693184e-04	ci right 4.092878e-04	k: 1474	n:3790000
KS ci ratio: 3.417599e-03	ci left: 2.572399e-01	ci right 2.581208e-01	k: 976608	n:3790000
NHS   3790000 perm   7198 sec   (527 perm/sec)   p_kst 2.576802e-01   p_cons 3.889182e-04   p_joint 1.455673e-03

Joint ci ratio: 5.010492e-02	ci left: 1.567859e-03	ci right 1.648693e-03	k: 6110	n:3800000
Cons ci ratio: 1.019446e-01	ci left: 3.691159e-04	ci right 4.090203e-04	k: 1477	n:3800000
KS ci ratio: 3.413207e-03	ci left: 2.572285e-01	ci right 2.581082e-01	k: 979139	n:3800000
NHS   3800000 perm   7232 sec   (525 perm/sec)   p_kst 2.576682e-01   p_cons 3.886842e-04   p_joint 1.607895e-03

Joint ci ratio: 5.005583e-02	ci left: 1.566854e-03	ci right 1.647555e-03	k: 6122	n:3810000
Cons ci ratio: 1.018069e-01	ci left: 3.691702e-04	ci right 4.090234e-04	k: 1481	n:3810000
KS ci ratio: 3.408761e-03	ci left: 2.572249e-01	ci right 2.581035e-01	k: 981700	n:3810000
NHS   3810000 perm   7267 sec   (524 perm/sec)   p_kst 2.576640e-01   p_cons 3.887139e-04   p_joint 1.606824e-03

Joint ci ratio: 5.000687e-02	ci left: 1.565854e-03	ci right 1.646422e-03	k: 6134	n:3820000
Cons ci ratio: 1.017041e-01	ci left: 3.689691e-04	ci right 4.087580e-04	k: 1484	n:3820000
KS ci ratio: 3.404403e-03	ci left: 2.572136e-01	ci right 2.580910e-01	k: 984231	n:3820000
NHS   3820000 perm   7302 sec   (523 perm/sec)   p_kst 2.576521e-01   p_cons 3.884817e-04   p_joint 1.605759e-03

Joint ci ratio: 5.006832e-02	ci left: 1.557898e-03	ci right 1.638158e-03	k: 6119	n:3830000
Cons ci ratio: 1.016015e-01	ci left: 3.687691e-04	ci right 4.084939e-04	k: 1487	n:3830000
KS ci ratio: 3.399883e-03	ci left: 2.572224e-01	ci right 2.580986e-01	k: 986839	n:3830000
NHS   3830000 perm   7337 sec   (522 perm/sec)   p_kst 2.576603e-01   p_cons 3.882507e-04   p_joint 1.597650e-03

Joint ci ratio: 5.000300e-02	ci left: 1.557956e-03	ci right 1.638111e-03	k: 6135	n:3840000
Cons ci ratio: 1.014312e-01	ci left: 3.690778e-04	ci right 4.087652e-04	k: 1492	n:3840000
KS ci ratio: 3.395549e-03	ci left: 2.572121e-01	ci right 2.580872e-01	k: 989374	n:3840000
NHS   3840000 perm   7374 sec   (521 perm/sec)   p_kst 2.576495e-01   p_cons 3.885417e-04   p_joint 1.597656e-03

Joint ci ratio: 4.993387e-02	ci left: 1.558270e-03	ci right 1.638327e-03	k: 6152	n:3850000
Cons ci ratio: 1.013295e-01	ci left: 3.688786e-04	ci right 4.085025e-04	k: 1495	n:3850000
KS ci ratio: 3.391075e-03	ci left: 2.572196e-01	ci right 2.580935e-01	k: 991977	n:3850000
NHS   3850000 perm   7410 sec   (520 perm/sec)   p_kst 2.576564e-01   p_cons 3.883117e-04   p_joint 1.597922e-03

Joint ci ratio: 4.984480e-02	ci left: 1.559861e-03	ci right 1.639853e-03	k: 6174	n:3860000
Cons ci ratio: 1.011943e-01	ci left: 3.689330e-04	ci right 4.085067e-04	k: 1499	n:3860000
KS ci ratio: 3.386720e-03	ci left: 2.572156e-01	ci right 2.580884e-01	k: 994536	n:3860000
NHS   3860000 perm   7446 sec   (518 perm/sec)   p_kst 2.576518e-01   p_cons 3.883420e-04   p_joint 1.599482e-03

Joint ci ratio: 5.029145e-02	ci left: 1.528017e-03	ci right 1.607099e-03	k: 6065	n:3870000
Cons ci ratio: 1.010933e-01	ci left: 3.687353e-04	ci right 4.082459e-04	k: 1502	n:3870000
KS ci ratio: 3.382354e-03	ci left: 2.572147e-01	ci right 2.580864e-01	k: 997107	n:3870000
NHS   3870000 perm   7482 sec   (517 perm/sec)   p_kst 2.576504e-01   p_cons 3.881137e-04   p_joint 1.567183e-03

Joint ci ratio: 5.023353e-02	ci left: 1.527642e-03	ci right 1.606610e-03	k: 6079	n:3880000
Cons ci ratio: 1.009925e-01	ci left: 3.685386e-04	ci right 4.079865e-04	k: 1505	n:3880000
KS ci ratio: 3.378115e-03	ci left: 2.572015e-01	ci right 2.580721e-01	k: 999630	n:3880000
NHS   3880000 perm   7518 sec   (516 perm/sec)   p_kst 2.576366e-01   p_cons 3.878866e-04   p_joint 1.566753e-03

Joint ci ratio: 5.015520e-02	ci left: 1.528538e-03	ci right 1.607426e-03	k: 6098	n:3890000
Cons ci ratio: 1.008921e-01	ci left: 3.683429e-04	ci right 4.077283e-04	k: 1508	n:3890000
KS ci ratio: 3.373775e-03	ci left: 2.572014e-01	ci right 2.580709e-01	k: 1002204	n:3890000
NHS   3890000 perm   7554 sec   (515 perm/sec)   p_kst 2.576360e-01   p_cons 3.876607e-04   p_joint 1.567609e-03

Joint ci ratio: 5.009364e-02	ci left: 1.528416e-03	ci right 1.607198e-03	k: 6113	n:3900000
Cons ci ratio: 1.007586e-01	ci left: 3.683982e-04	ci right 4.077344e-04	k: 1512	n:3900000
KS ci ratio: 3.369513e-03	ci left: 2.571945e-01	ci right 2.580628e-01	k: 1004751	n:3900000
NHS   3900000 perm   7590 sec   (514 perm/sec)   p_kst 2.576285e-01   p_cons 3.876923e-04   p_joint 1.567436e-03

Joint ci ratio: 5.004049e-02	ci left: 1.527791e-03	ci right 1.606454e-03	k: 6126	n:3910000
Cons ci ratio: 1.006257e-01	ci left: 3.684533e-04	ci right 4.077403e-04	k: 1516	n:3910000
KS ci ratio: 3.365036e-03	ci left: 2.572139e-01	ci right 2.580811e-01	k: 1007401	n:3910000
NHS   3910000 perm   7626 sec   (513 perm/sec)   p_kst 2.576473e-01   p_cons 3.877238e-04   p_joint 1.566752e-03

Joint ci ratio: 4.996713e-02	ci left: 1.528428e-03	ci right 1.607005e-03	k: 6144	n:3920000
Cons ci ratio: 1.004603e-01	ci left: 3.687568e-04	ci right 4.080078e-04	k: 1521	n:3920000
KS ci ratio: 3.360832e-03	ci left: 2.572041e-01	ci right 2.580702e-01	k: 1009937	n:3920000
NHS   3920000 perm   7662 sec   (512 perm/sec)   p_kst 2.576370e-01   p_cons 3.880102e-04   p_joint 1.567347e-03

Joint ci ratio: 4.991032e-02	ci left: 1.528056e-03	ci right 1.606523e-03	k: 6158	n:3930000
Cons ci ratio: 1.002957e-01	ci left: 3.690588e-04	ci right 4.082738e-04	k: 1526	n:3930000
KS ci ratio: 3.356545e-03	ci left: 2.572056e-01	ci right 2.580706e-01	k: 1012517	n:3930000
NHS   3930000 perm   7700 sec   (510 perm/sec)   p_kst 2.576379e-01   p_cons 3.882952e-04   p_joint 1.566921e-03

Joint ci ratio: 4.986584e-02	ci left: 1.526935e-03	ci right 1.605273e-03	k: 6169	n:3940000
Cons ci ratio: 1.001973e-01	ci left: 3.688644e-04	ci right 4.080180e-04	k: 1529	n:3940000
KS ci ratio: 3.352379e-03	ci left: 2.571951e-01	ci right 2.580590e-01	k: 1015050	n:3940000
NHS   3940000 perm   7736 sec   (509 perm/sec)   p_kst 2.576269e-01   p_cons 3.880711e-04   p_joint 1.565736e-03

Joint ci ratio: 4.978116e-02	ci left: 1.528320e-03	ci right 1.606591e-03	k: 6190	n:3950000
Cons ci ratio: 1.000340e-01	ci left: 3.691647e-04	ci right 4.082826e-04	k: 1534	n:3950000
KS ci ratio: 3.348176e-03	ci left: 2.571908e-01	ci right 2.580536e-01	k: 1017607	n:3950000
NHS   3950000 perm   7773 sec   (508 perm/sec)   p_kst 2.576220e-01   p_cons 3.883544e-04   p_joint 1.567089e-03

Joint ci ratio: 4.972899e-02	ci left: 1.527702e-03	ci right 1.605858e-03	k: 6203	n:3960000
Cons ci ratio: 9.980660e-02	ci left: 3.699560e-04	ci right 4.090634e-04	k: 1541	n:3960000
KS ci ratio: 3.343842e-03	ci left: 2.572032e-01	ci right 2.580649e-01	k: 1020230	n:3960000
NHS   3960000 perm   7810 sec   (507 perm/sec)   p_kst 2.576338e-01   p_cons 3.891414e-04   p_joint 1.566414e-03

Outputting figure to mutsig2_images.part000000000114/NHS.13_5030_3960000_0.25763_0.00038914_0.0015664.png
                gene_name: NHS
               theta_stop: 0.100 
                    nperm: 3960000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.00039 
      ci_cons_bounds_left: 0.00037 
     ci_cons_bounds_right: 0.00041 
                  p_joint: 0.0016 
     ci_joint_bounds_left: 0.0015 
    ci_joint_bounds_right: 0.0016 

Current progress: 3 percent done.
NID1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.028398e-01	ci left: 3.233938e-02	ci right 3.973408e-02	k: 359	n:10000
Cons ci ratio: 4.993416e-02	ci left: 3.716666e-01	ci right 3.908027e-01	k: 3812	n:10000
KS ci ratio: 5.088077e-01	ci left: 4.407042e-03	ci right 7.491475e-03	k: 58	n:10000
NID1   10000 perm   2 sec   (4356 perm/sec)   p_kst 5.800000e-03   p_cons 3.812000e-01   p_joint 3.590000e-02

Joint ci ratio: 2.044404e-01	ci left: 1.620275e-02	ci right 1.993924e-02	k: 360	n:20000
Cons ci ratio: 3.646221e-02	ci left: 3.595180e-01	ci right 3.729209e-01	k: 7324	n:20000
KS ci ratio: 3.362310e-01	ci left: 5.616577e-03	ci right 7.930323e-03	k: 134	n:20000
NID1   20000 perm   5 sec   (3888 perm/sec)   p_kst 6.700000e-03   p_cons 3.662000e-01   p_joint 1.800000e-02

Joint ci ratio: 2.172740e-01	ci left: 9.566664e-03	ci right 1.192952e-02	k: 321	n:30000
Cons ci ratio: 2.978941e-02	ci left: 3.604791e-01	ci right 3.714135e-01	k: 10978	n:30000
KS ci ratio: 2.748756e-01	ci left: 5.808226e-03	ci right 7.689210e-03	k: 201	n:30000
NID1   30000 perm   8 sec   (3717 perm/sec)   p_kst 6.700000e-03   p_cons 3.659333e-01   p_joint 1.070000e-02

Joint ci ratio: 1.717872e-01	ci left: 1.174531e-02	ci right 1.397624e-02	k: 513	n:40000
Cons ci ratio: 2.573410e-02	ci left: 3.623736e-01	ci right 3.718457e-01	k: 14684	n:40000
KS ci ratio: 2.476424e-01	ci left: 5.454280e-03	ci right 7.018704e-03	k: 248	n:40000
NID1   40000 perm   11 sec   (3637 perm/sec)   p_kst 6.200000e-03   p_cons 3.671000e-01   p_joint 1.282500e-02

Joint ci ratio: 1.329879e-01	ci left: 1.594305e-02	ci right 1.823351e-02	k: 853	n:50000
Cons ci ratio: 2.301256e-02	ci left: 3.629726e-01	ci right 3.714428e-01	k: 18360	n:50000
KS ci ratio: 2.230361e-01	ci left: 5.455194e-03	ci right 6.843083e-03	k: 306	n:50000
NID1   50000 perm   14 sec   (3566 perm/sec)   p_kst 6.120000e-03   p_cons 3.672000e-01   p_joint 1.706000e-02

Joint ci ratio: 1.289565e-01	ci left: 1.418779e-02	ci right 1.615951e-02	k: 909	n:60000
Cons ci ratio: 2.100764e-02	ci left: 3.633411e-01	ci right 3.710717e-01	k: 22032	n:60000
KS ci ratio: 2.056925e-01	ci left: 5.397726e-03	ci right 6.650779e-03	k: 360	n:60000
NID1   60000 perm   17 sec   (3503 perm/sec)   p_kst 6.000000e-03   p_cons 3.672000e-01   p_joint 1.515000e-02

Joint ci ratio: 1.204120e-01	ci left: 1.401551e-02	ci right 1.582502e-02	k: 1043	n:70000
Cons ci ratio: 1.943087e-02	ci left: 3.640694e-01	ci right 3.712273e-01	k: 25735	n:70000
KS ci ratio: 1.895685e-01	ci left: 5.495756e-03	ci right 6.660045e-03	k: 424	n:70000
NID1   70000 perm   20 sec   (3445 perm/sec)   p_kst 6.057143e-03   p_cons 3.676429e-01   p_joint 1.490000e-02

Joint ci ratio: 1.155784e-01	ci left: 1.335511e-02	ci right 1.500540e-02	k: 1133	n:80000
Cons ci ratio: 1.815033e-02	ci left: 3.649562e-01	ci right 3.716534e-01	k: 29464	n:80000
KS ci ratio: 1.783840e-01	ci left: 5.464637e-03	ci right 6.546659e-03	k: 479	n:80000
NID1   80000 perm   24 sec   (3386 perm/sec)   p_kst 5.987500e-03   p_cons 3.683000e-01   p_joint 1.416250e-02

Joint ci ratio: 1.163481e-01	ci left: 1.173037e-02	ci right 1.319019e-02	k: 1120	n:90000
Cons ci ratio: 1.715574e-02	ci left: 3.639718e-01	ci right 3.702812e-01	k: 33041	n:90000
KS ci ratio: 1.669426e-01	ci left: 5.580415e-03	ci right 6.607367e-03	k: 547	n:90000
NID1   90000 perm   27 sec   (3337 perm/sec)   p_kst 6.077778e-03   p_cons 3.671222e-01   p_joint 1.244444e-02

Joint ci ratio: 8.478251e-02	ci left: 2.004189e-02	ci right 2.182605e-02	k: 2092	n:100000
Cons ci ratio: 1.627058e-02	ci left: 3.642711e-01	ci right 3.702566e-01	k: 36726	n:100000
KS ci ratio: 1.571967e-01	ci left: 5.694027e-03	ci right 6.674947e-03	k: 617	n:100000
NID1   100000 perm   31 sec   (3278 perm/sec)   p_kst 6.170000e-03   p_cons 3.672600e-01   p_joint 2.092000e-02

Joint ci ratio: 9.268840e-02	ci left: 1.525786e-02	ci right 1.674964e-02	k: 1759	n:110000
Cons ci ratio: 1.550662e-02	ci left: 3.646136e-01	ci right 3.703207e-01	k: 40421	n:110000
KS ci ratio: 1.509802e-01	ci left: 5.630878e-03	ci right 6.559089e-03	k: 669	n:110000
NID1   110000 perm   34 sec   (3231 perm/sec)   p_kst 6.081818e-03   p_cons 3.674636e-01   p_joint 1.599091e-02

Joint ci ratio: 8.356239e-02	ci left: 1.725527e-02	ci right 1.876815e-02	k: 2160	n:120000
Cons ci ratio: 1.485171e-02	ci left: 3.645716e-01	ci right 3.700349e-01	k: 44076	n:120000
KS ci ratio: 1.452449e-01	ci left: 5.594957e-03	ci right 6.479171e-03	k: 723	n:120000
NID1   120000 perm   38 sec   (3188 perm/sec)   p_kst 6.025000e-03   p_cons 3.673000e-01   p_joint 1.800000e-02

Joint ci ratio: 7.620934e-02	ci left: 1.918545e-02	ci right 2.071299e-02	k: 2592	n:130000
Cons ci ratio: 1.423749e-02	ci left: 3.657078e-01	ci right 3.709596e-01	k: 47883	n:130000
KS ci ratio: 1.393979e-01	ci left: 5.624526e-03	ci right 6.474657e-03	k: 785	n:130000
NID1   130000 perm   41 sec   (3141 perm/sec)   p_kst 6.038462e-03   p_cons 3.683308e-01   p_joint 1.993846e-02

Joint ci ratio: 7.719506e-02	ci left: 1.738708e-02	ci right 1.879013e-02	k: 2531	n:140000
Cons ci ratio: 1.371903e-02	ci left: 3.658225e-01	ci right 3.708830e-01	k: 51569	n:140000
KS ci ratio: 1.343641e-01	ci left: 5.636674e-03	ci right 6.455416e-03	k: 845	n:140000
NID1   140000 perm   45 sec   (3099 perm/sec)   p_kst 6.035714e-03   p_cons 3.683500e-01   p_joint 1.807857e-02

Joint ci ratio: 7.851370e-02	ci left: 1.570445e-02	ci right 1.699435e-02	k: 2451	n:150000
Cons ci ratio: 1.327049e-02	ci left: 3.653257e-01	ci right 3.702127e-01	k: 55165	n:150000
KS ci ratio: 1.302736e-01	ci left: 5.608974e-03	ci right 6.396971e-03	k: 899	n:150000
NID1   150000 perm   49 sec   (3059 perm/sec)   p_kst 5.993333e-03   p_cons 3.677667e-01   p_joint 1.634000e-02

Joint ci ratio: 8.040616e-02	ci left: 1.404859e-02	ci right 1.523159e-02	k: 2341	n:160000
Cons ci ratio: 1.286028e-02	ci left: 3.649996e-01	ci right 3.697302e-01	k: 58778	n:160000
KS ci ratio: 1.261369e-01	ci left: 5.621390e-03	ci right 6.384178e-03	k: 959	n:160000
NID1   160000 perm   53 sec   (3021 perm/sec)   p_kst 5.993750e-03   p_cons 3.673625e-01   p_joint 1.463125e-02

Joint ci ratio: 8.335880e-02	ci left: 1.230559e-02	ci right 1.338171e-02	k: 2182	n:170000
Cons ci ratio: 1.248416e-02	ci left: 3.647787e-01	ci right 3.693670e-01	k: 62402	n:170000
KS ci ratio: 1.225523e-01	ci left: 5.615584e-03	ci right 6.354357e-03	k: 1016	n:170000
NID1   170000 perm   57 sec   (2985 perm/sec)   p_kst 5.976471e-03   p_cons 3.670706e-01   p_joint 1.283529e-02

Joint ci ratio: 8.105306e-02	ci left: 1.230756e-02	ci right 1.335267e-02	k: 2308	n:180000
Cons ci ratio: 1.212977e-02	ci left: 3.649448e-01	ci right 3.694040e-01	k: 66091	n:180000
KS ci ratio: 1.190340e-01	ci left: 5.632260e-03	ci right 6.350458e-03	k: 1077	n:180000
NID1   180000 perm   61 sec   (2944 perm/sec)   p_kst 5.983333e-03   p_cons 3.671722e-01   p_joint 1.282222e-02

Joint ci ratio: 8.120548e-02	ci left: 1.162353e-02	ci right 1.261249e-02	k: 2301	n:190000
Cons ci ratio: 1.181104e-02	ci left: 3.648164e-01	ci right 3.691561e-01	k: 69727	n:190000
KS ci ratio: 1.162654e-01	ci left: 5.601450e-03	ci right 6.297964e-03	k: 1129	n:190000
NID1   190000 perm   65 sec   (2908 perm/sec)   p_kst 5.942105e-03   p_cons 3.669842e-01   p_joint 1.211053e-02

Joint ci ratio: 8.105247e-02	ci left: 1.109121e-02	ci right 1.203302e-02	k: 2311	n:200000
Cons ci ratio: 1.151866e-02	ci left: 3.646024e-01	ci right 3.688314e-01	k: 73343	n:200000
KS ci ratio: 1.136330e-01	ci left: 5.578754e-03	ci right 6.255687e-03	k: 1182	n:200000
NID1   200000 perm   70 sec   (2869 perm/sec)   p_kst 5.910000e-03   p_cons 3.667150e-01   p_joint 1.155500e-02

Joint ci ratio: 7.861888e-02	ci left: 1.123979e-02	ci right 1.216424e-02	k: 2456	n:210000
Cons ci ratio: 1.125019e-02	ci left: 3.642769e-01	ci right 3.684030e-01	k: 76931	n:210000
KS ci ratio: 1.106327e-01	ci left: 5.613948e-03	ci right 6.275992e-03	k: 1247	n:210000
NID1   210000 perm   74 sec   (2833 perm/sec)   p_kst 5.938095e-03   p_cons 3.663381e-01   p_joint 1.169524e-02

Joint ci ratio: 7.809541e-02	ci left: 1.088032e-02	ci right 1.176898e-02	k: 2490	n:220000
Cons ci ratio: 1.099459e-02	ci left: 3.641955e-01	ci right 3.682263e-01	k: 80566	n:220000
KS ci ratio: 1.083993e-01	ci left: 5.588653e-03	ci right 6.233560e-03	k: 1299	n:220000
NID1   220000 perm   79 sec   (2785 perm/sec)   p_kst 5.904545e-03   p_cons 3.662091e-01   p_joint 1.131818e-02

Joint ci ratio: 7.835370e-02	ci left: 1.034321e-02	ci right 1.119092e-02	k: 2475	n:230000
Cons ci ratio: 1.075112e-02	ci left: 3.643175e-01	ci right 3.682598e-01	k: 84246	n:230000
KS ci ratio: 1.057855e-01	ci left: 5.620712e-03	ci right 6.252706e-03	k: 1364	n:230000
NID1   230000 perm   84 sec   (2743 perm/sec)   p_kst 5.930435e-03   p_cons 3.662870e-01   p_joint 1.076087e-02

Joint ci ratio: 7.713751e-02	ci left: 1.023499e-02	ci right 1.106022e-02	k: 2554	n:240000
Cons ci ratio: 1.052399e-02	ci left: 3.643928e-01	ci right 3.682521e-01	k: 87917	n:240000
KS ci ratio: 1.034614e-01	ci left: 5.638092e-03	ci right 6.257264e-03	k: 1426	n:240000
NID1   240000 perm   89 sec   (2711 perm/sec)   p_kst 5.941667e-03   p_cons 3.663208e-01   p_joint 1.064167e-02

Joint ci ratio: 7.580184e-02	ci left: 1.018262e-02	ci right 1.098879e-02	k: 2645	n:250000
Cons ci ratio: 1.031388e-02	ci left: 3.643191e-01	ci right 3.681000e-01	k: 91552	n:250000
KS ci ratio: 1.014211e-01	ci left: 5.638624e-03	ci right 6.244916e-03	k: 1484	n:250000
NID1   250000 perm   94 sec   (2673 perm/sec)   p_kst 5.936000e-03   p_cons 3.662080e-01   p_joint 1.058000e-02

Joint ci ratio: 7.584640e-02	ci left: 9.783358e-03	ci right 1.055839e-02	k: 2643	n:260000
Cons ci ratio: 1.011184e-02	ci left: 3.644361e-01	ci right 3.681438e-01	k: 95235	n:260000
KS ci ratio: 9.949695e-02	ci left: 5.639226e-03	ci right 6.233407e-03	k: 1542	n:260000
NID1   260000 perm   99 sec   (2632 perm/sec)   p_kst 5.930769e-03   p_cons 3.662885e-01   p_joint 1.016538e-02

Outputting figure to mutsig2_images.part000000000114/NID1.13_3824_260000_0.0059308_0.36629_0.010165.png
                gene_name: NID1
               theta_stop: 0.099 
                    nperm: 260000 
                     p_ks: 0.0059 
        ci_ks_bounds_left: 0.0056 
       ci_ks_bounds_right: 0.0062 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.010 
     ci_joint_bounds_left: 0.0098 
    ci_joint_bounds_right: 0.011 

Current progress: 5 percent done.
NID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.003189e-02	ci left: 6.205509e-01	ci right 6.395732e-01	k: 6301	n:10000
Cons ci ratio: 3.679107e-02	ci left: 5.217618e-01	ci right 5.414198e-01	k: 5316	n:10000
KS ci ratio: 3.213668e-02	ci left: 5.883129e-01	ci right 6.076300e-01	k: 5980	n:10000
NID2   10000 perm   3 sec   (3844 perm/sec)   p_kst 5.980000e-01   p_cons 5.316000e-01   p_joint 6.301000e-01

Outputting figure to mutsig2_images.part000000000114/NID2.11_4216_10000_0.598_0.5316_0.6301.png
                gene_name: NID2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 7 percent done.
NINL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.159567e-02	ci left: 9.140975e-01	ci right 9.248566e-01	k: 9196	n:10000
Cons ci ratio: 4.079421e-02	ci left: 4.701650e-01	ci right 4.898466e-01	k: 4800	n:10000
KS ci ratio: 1.215838e-02	ci left: 9.065853e-01	ci right 9.177733e-01	k: 9123	n:10000
NINL   10000 perm   2 sec   (4778 perm/sec)   p_kst 9.123000e-01   p_cons 4.800000e-01   p_joint 9.196000e-01

Outputting figure to mutsig2_images.part000000000114/NINL.11_4241_10000_0.9123_0.48_0.9196.png
                gene_name: NINL
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 9 percent done.
NIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.708612e-01	ci left: 4.571402e-02	ci right 5.435051e-02	k: 499	n:10000
Cons ci ratio: 9.305635e-02	ci left: 1.436425e-01	ci right 1.577616e-01	k: 1506	n:10000
KS ci ratio: 1.888568e-01	ci left: 3.738868e-02	ci right 4.528136e-02	k: 412	n:10000
NIN   10000 perm   3 sec   (3267 perm/sec)   p_kst 4.120000e-02   p_cons 1.506000e-01   p_joint 4.990000e-02

Joint ci ratio: 1.318881e-01	ci left: 3.950386e-02	ci right 4.513019e-02	k: 845	n:20000
Cons ci ratio: 6.343949e-02	ci left: 1.551906e-01	ci right 1.654083e-01	k: 3205	n:20000
KS ci ratio: 1.350006e-01	ci left: 3.771321e-02	ci right 4.322141e-02	k: 808	n:20000
NIN   20000 perm   7 sec   (3044 perm/sec)   p_kst 4.040000e-02   p_cons 1.602500e-01   p_joint 4.225000e-02

Joint ci ratio: 1.192486e-01	ci left: 3.268985e-02	ci right 3.686754e-02	k: 1042	n:30000
Cons ci ratio: 5.482399e-02	ci left: 1.415937e-01	ci right 1.496084e-01	k: 4367	n:30000
KS ci ratio: 1.109690e-01	ci left: 3.771320e-02	ci right 4.217646e-02	k: 1197	n:30000
NIN   30000 perm   10 sec   (2936 perm/sec)   p_kst 3.990000e-02   p_cons 1.455667e-01   p_joint 3.473333e-02

Joint ci ratio: 9.716320e-02	ci left: 3.719708e-02	ci right 4.102020e-02	k: 1563	n:40000
Cons ci ratio: 4.455715e-02	ci left: 1.585005e-01	ci right 1.657487e-01	k: 6484	n:40000
KS ci ratio: 9.642769e-02	ci left: 3.775869e-02	ci right 4.160850e-02	k: 1586	n:40000
NIN   40000 perm   14 sec   (2872 perm/sec)   p_kst 3.965000e-02   p_cons 1.621000e-01   p_joint 3.907500e-02

Outputting figure to mutsig2_images.part000000000114/NIN.10_6666_40000_0.03965_0.1621_0.039075.png
                gene_name: NIN
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.041 

Current progress: 10 percent done.
NF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.052124e-02	ci left: 3.661952e-01	ci right 3.852773e-01	k: 3757	n:10000
Cons ci ratio: 5.490924e-02	ci left: 3.282306e-01	ci right 3.468641e-01	k: 3375	n:10000
KS ci ratio: 4.905673e-02	ci left: 3.800254e-01	ci right 3.992390e-01	k: 3896	n:10000
NF1   10000 perm   3 sec   (2859 perm/sec)   p_kst 3.896000e-01   p_cons 3.375000e-01   p_joint 3.757000e-01

Outputting figure to mutsig2_images.part000000000114/NF1.9_8813_10000_0.3896_0.3375_0.3757.png
                gene_name: NF1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 12 percent done.
NFIA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.213117e-02	ci left: 3.516775e-01	ci right 3.706035e-01	k: 3611	n:10000
Cons ci ratio: 8.205725e-02	ci left: 1.781208e-01	ci right 1.934627e-01	k: 1857	n:10000
KS ci ratio: 4.043641e-02	ci left: 4.745607e-01	ci right 4.942484e-01	k: 4844	n:10000
NFIA   10000 perm   2 sec   (4995 perm/sec)   p_kst 4.844000e-01   p_cons 1.857000e-01   p_joint 3.611000e-01

Outputting figure to mutsig2_images.part000000000114/NFIA.8_1779_10000_0.4844_0.1857_0.3611.png
                gene_name: NFIA
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 14 percent done.
NFX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.092516e-02	ci left: 4.685668e-01	ci right 4.882458e-01	k: 4784	n:10000
Cons ci ratio: 3.690941e-02	ci left: 5.201603e-01	ci right 5.398222e-01	k: 5300	n:10000
KS ci ratio: 4.883062e-02	ci left: 3.822151e-01	ci right 4.014480e-01	k: 3918	n:10000
NFX1   10000 perm   2 sec   (4319 perm/sec)   p_kst 3.918000e-01   p_cons 5.300000e-01   p_joint 4.784000e-01

Outputting figure to mutsig2_images.part000000000114/NFX1.8_3577_10000_0.3918_0.53_0.4784.png
                gene_name: NFX1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 16 percent done.
NES
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.483523e-02	ci left: 2.071791e-01	ci right 2.233870e-01	k: 2152	n:10000
Cons ci ratio: 4.497695e-03	ci left: 9.846908e-01	ci right 9.892189e-01	k: 9871	n:10000
KS ci ratio: 1.163709e-01	ci left: 9.593994e-02	ci right 1.078931e-01	k: 1018	n:10000
NES   10000 perm   2 sec   (4243 perm/sec)   p_kst 1.018000e-01   p_cons 9.871000e-01   p_joint 2.152000e-01

Joint ci ratio: 5.618368e-02	ci left: 1.902211e-01	ci right 2.012675e-01	k: 3914	n:20000
Cons ci ratio: 3.205449e-03	ci left: 9.851735e-01	ci right 9.883827e-01	k: 19737	n:20000
KS ci ratio: 8.299286e-02	ci left: 9.617007e-02	ci right 1.045465e-01	k: 2006	n:20000
NES   20000 perm   5 sec   (3824 perm/sec)   p_kst 1.003000e-01   p_cons 9.868500e-01   p_joint 1.957000e-01

Outputting figure to mutsig2_images.part000000000114/NES.7_4882_20000_0.1003_0.98685_0.1957.png
                gene_name: NES
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 17 percent done.
NET1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.278569e-02	ci left: 8.979552e-01	ci right 9.096083e-01	k: 9039	n:10000
Cons ci ratio: 1.464252e-02	ci left: 8.710161e-01	ci right 8.839631e-01	k: 8776	n:10000
KS ci ratio: 2.289119e-02	ci left: 7.370442e-01	ci right 7.542125e-01	k: 7457	n:10000
NET1   10000 perm   2 sec   (4732 perm/sec)   p_kst 7.457000e-01   p_cons 8.776000e-01   p_joint 9.039000e-01

Outputting figure to mutsig2_images.part000000000114/NET1.7_1936_10000_0.7457_0.8776_0.9039.png
                gene_name: NET1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 19 percent done.
NEO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.029101e-02	ci left: 4.763591e-01	ci right 4.960489e-01	k: 4862	n:10000
Cons ci ratio: 1.012743e-02	ci left: 9.325769e-01	ci right 9.421664e-01	k: 9375	n:10000
KS ci ratio: 6.677346e-02	ci left: 2.476661e-01	ci right 2.648761e-01	k: 2562	n:10000
NEO1   10000 perm   3 sec   (3898 perm/sec)   p_kst 2.562000e-01   p_cons 9.375000e-01   p_joint 4.862000e-01

Outputting figure to mutsig2_images.part000000000114/NEO1.6_4502_10000_0.2562_0.9375_0.4862.png
                gene_name: NEO1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 21 percent done.
NETO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.601525e-02	ci left: 5.323740e-01	ci right 5.520014e-01	k: 5422	n:10000
Cons ci ratio: 6.012179e-02	ci left: 2.892436e-01	ci right 3.072740e-01	k: 2982	n:10000
KS ci ratio: 3.626257e-02	ci left: 5.289696e-01	ci right 5.486078e-01	k: 5388	n:10000
NETO1   10000 perm   2 sec   (5527 perm/sec)   p_kst 5.388000e-01   p_cons 2.982000e-01   p_joint 5.422000e-01

Outputting figure to mutsig2_images.part000000000114/NETO1.6_1680_10000_0.5388_0.2982_0.5422.png
                gene_name: NETO1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 22 percent done.
NFIB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.723711e-02	ci left: 8.306303e-01	ci right 8.451723e-01	k: 8380	n:10000
Cons ci ratio: 6.138026e-02	ci left: 2.807224e-01	ci right 2.986003e-01	k: 2896	n:10000
KS ci ratio: 1.161915e-02	ci left: 9.137886e-01	ci right 9.245657e-01	k: 9193	n:10000
NFIB   10000 perm   2 sec   (5490 perm/sec)   p_kst 9.193000e-01   p_cons 2.896000e-01   p_joint 8.380000e-01

Outputting figure to mutsig2_images.part000000000114/NFIB.6_1299_10000_0.9193_0.2896_0.838.png
                gene_name: NFIB
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 24 percent done.
NFKB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.756493e-02	ci left: 6.597794e-01	ci right 6.783220e-01	k: 6691	n:10000
Cons ci ratio: 4.435067e-02	ci left: 4.287437e-01	ci right 4.482921e-01	k: 4385	n:10000
KS ci ratio: 2.315067e-02	ci left: 7.326985e-01	ci right 7.499607e-01	k: 7414	n:10000
NFKB1   10000 perm   2 sec   (5188 perm/sec)   p_kst 7.414000e-01   p_cons 4.385000e-01   p_joint 6.691000e-01

Outputting figure to mutsig2_images.part000000000114/NFKB1.6_3002_10000_0.7414_0.4385_0.6691.png
                gene_name: NFKB1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 26 percent done.
NETO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.334015e-02	ci left: 5.704549e-01	ci right 5.898984e-01	k: 5802	n:10000
Cons ci ratio: 1.315017e-02	ci left: 8.928248e-01	ci right 9.047417e-01	k: 8989	n:10000
KS ci ratio: 4.730797e-02	ci left: 3.973494e-01	ci right 4.167048e-01	k: 4070	n:10000
NETO2   10000 perm   2 sec   (5121 perm/sec)   p_kst 4.070000e-01   p_cons 8.989000e-01   p_joint 5.802000e-01

Outputting figure to mutsig2_images.part000000000114/NETO2.5_1614_10000_0.407_0.8989_0.5802.png
                gene_name: NETO2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 28 percent done.
NEURL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.519941e-02	ci left: 2.567652e-01	ci right 2.741716e-01	k: 2654	n:10000
Cons ci ratio: 6.309380e-02	ci left: 2.696308e-01	ci right 2.872985e-01	k: 2784	n:10000
KS ci ratio: 6.254881e-02	ci left: 2.730962e-01	ci right 2.908310e-01	k: 2819	n:10000
NEURL4   10000 perm   2 sec   (4340 perm/sec)   p_kst 2.819000e-01   p_cons 2.784000e-01   p_joint 2.654000e-01

Outputting figure to mutsig2_images.part000000000114/NEURL4.5_4805_10000_0.2819_0.2784_0.2654.png
                gene_name: NEURL4
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 29 percent done.
NEUROD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.392529e-02	ci left: 5.619317e-01	ci right 5.814265e-01	k: 5717	n:10000
Cons ci ratio: 6.587477e-02	ci left: 2.528084e-01	ci right 2.701307e-01	k: 2614	n:10000
KS ci ratio: 3.410571e-02	ci left: 5.593253e-01	ci right 5.788345e-01	k: 5691	n:10000
NEUROD4   10000 perm   2 sec   (5488 perm/sec)   p_kst 5.691000e-01   p_cons 2.614000e-01   p_joint 5.717000e-01

Outputting figure to mutsig2_images.part000000000114/NEUROD4.5_1000_10000_0.5691_0.2614_0.5717.png
                gene_name: NEUROD4
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 31 percent done.
NEXN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.718632e-02	ci left: 8.314445e-01	ci right 8.459577e-01	k: 8388	n:10000
Cons ci ratio: 1.779247e-02	ci left: 8.216784e-01	ci right 8.365294e-01	k: 8292	n:10000
KS ci ratio: 2.622426e-02	ci left: 6.816371e-01	ci right 6.998516e-01	k: 6908	n:10000
NEXN   10000 perm   2 sec   (4962 perm/sec)   p_kst 6.908000e-01   p_cons 8.292000e-01   p_joint 8.388000e-01

Outputting figure to mutsig2_images.part000000000114/NEXN.5_2076_10000_0.6908_0.8292_0.8388.png
                gene_name: NEXN
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 33 percent done.
NFAT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.782131e-02	ci left: 3.921708e-01	ci right 4.114864e-01	k: 4018	n:10000
Cons ci ratio: 2.149762e-03	ci left: 9.958378e-01	ci right 9.980570e-01	k: 9971	n:10000
KS ci ratio: 7.649036e-02	ci left: 1.999823e-01	ci right 2.159882e-01	k: 2079	n:10000
NFAT5   10000 perm   3 sec   (3462 perm/sec)   p_kst 2.079000e-01   p_cons 9.971000e-01   p_joint 4.018000e-01

Outputting figure to mutsig2_images.part000000000114/NFAT5.5_4706_10000_0.2079_0.9971_0.4018.png
                gene_name: NFAT5
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 34 percent done.
NFATC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.515890e-03	ci left: 9.698435e-01	ci right 9.762769e-01	k: 9732	n:10000
KS ci ratio: 1.163479e-02	ci left: 9.135826e-01	ci right 9.243718e-01	k: 9191	n:10000
NFATC2   10000 perm   2 sec   (5179 perm/sec)   p_kst 9.191000e-01   p_cons 9.732000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NFATC2.5_2940_10000_0.9191_0.9732_1.png
                gene_name: NFATC2
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
NFATC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.868369e-02	ci left: 8.071466e-01	ci right 8.224696e-01	k: 8149	n:10000
KS ci ratio: 2.133959e-02	ci left: 7.630411e-01	ci right 7.796005e-01	k: 7714	n:10000
NFATC3   10000 perm   2 sec   (4445 perm/sec)   p_kst 7.714000e-01   p_cons 8.149000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NFATC3.5_3498_10000_0.7714_0.8149_1.png
                gene_name: NFATC3
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
NFATC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.333861e-02	ci left: 4.401153e-01	ci right 4.597139e-01	k: 4499	n:10000
Cons ci ratio: 4.492253e-02	ci left: 4.224616e-01	ci right 4.419779e-01	k: 4322	n:10000
KS ci ratio: 5.915936e-02	ci left: 2.959840e-01	ci right 3.141297e-01	k: 3050	n:10000
NFATC4   10000 perm   2 sec   (4767 perm/sec)   p_kst 3.050000e-01   p_cons 4.322000e-01   p_joint 4.499000e-01

Outputting figure to mutsig2_images.part000000000114/NFATC4.5_3007_10000_0.305_0.4322_0.4499.png
                gene_name: NFATC4
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 40 percent done.
NFXL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
Cons ci ratio: 2.240477e-01	ci left: 2.636581e-02	ci right 3.311184e-02	k: 296	n:10000
KS ci ratio: 2.469922e-02	ci left: 7.068480e-01	ci right 7.246262e-01	k: 7158	n:10000
NFXL1   10000 perm   2 sec   (4902 perm/sec)   p_kst 7.158000e-01   p_cons 2.960000e-02   p_joint 1.072000e-01

Joint ci ratio: 6.999770e-02	ci left: 1.307849e-01	ci right 1.403213e-01	k: 2710	n:20000
Cons ci ratio: 1.608167e-01	ci left: 2.652586e-02	ci right 3.121245e-02	k: 576	n:20000
KS ci ratio: 1.777695e-02	ci left: 7.021970e-01	ci right 7.148423e-01	k: 14171	n:20000
NFXL1   20000 perm   5 sec   (4220 perm/sec)   p_kst 7.085500e-01   p_cons 2.880000e-02   p_joint 1.355000e-01

Joint ci ratio: 6.030171e-02	ci left: 1.197311e-01	ci right 1.272087e-01	k: 3703	n:30000
Cons ci ratio: 1.288374e-01	ci left: 2.800174e-02	ci right 3.188999e-02	k: 897	n:30000
KS ci ratio: 1.445112e-02	ci left: 7.051970e-01	ci right 7.154956e-01	k: 21311	n:30000
NFXL1   30000 perm   8 sec   (3891 perm/sec)   p_kst 7.103667e-01   p_cons 2.990000e-02   p_joint 1.234333e-01

Joint ci ratio: 4.189733e-02	ci left: 1.757748e-01	ci right 1.833218e-01	k: 7181	n:40000
Cons ci ratio: 1.073233e-01	ci left: 3.054025e-02	ci right 3.402808e-02	k: 1290	n:40000
KS ci ratio: 1.250267e-02	ci left: 7.063040e-01	ci right 7.152153e-01	k: 28431	n:40000
NFXL1   40000 perm   11 sec   (3486 perm/sec)   p_kst 7.107750e-01   p_cons 3.225000e-02   p_joint 1.795250e-01

Joint ci ratio: 3.941946e-02	ci left: 1.618552e-01	ci right 1.683837e-01	k: 8255	n:50000
Cons ci ratio: 9.617026e-02	ci left: 3.061127e-02	ci right 3.372336e-02	k: 1607	n:50000
KS ci ratio: 1.117392e-02	ci left: 7.071050e-01	ci right 7.150705e-01	k: 35555	n:50000
NFXL1   50000 perm   15 sec   (3440 perm/sec)   p_kst 7.111000e-01   p_cons 3.214000e-02   p_joint 1.651000e-01

Outputting figure to mutsig2_images.part000000000114/NFXL1.5_2824_50000_0.7111_0.03214_0.1651.png
                gene_name: NFXL1
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 41 percent done.
NIPA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.162590e-02	ci left: 1.796951e-01	ci right 1.950875e-01	k: 1873	n:10000
Cons ci ratio: 5.211988e-02	ci left: 3.517769e-01	ci right 3.707040e-01	k: 3612	n:10000
KS ci ratio: 1.014946e-01	ci left: 1.231736e-01	ci right 1.364429e-01	k: 1297	n:10000
NIPA2   10000 perm   2 sec   (5781 perm/sec)   p_kst 1.297000e-01   p_cons 3.612000e-01   p_joint 1.873000e-01

Joint ci ratio: 4.561193e-02	ci left: 2.635085e-01	ci right 2.758585e-01	k: 5393	n:20000
Cons ci ratio: 3.729749e-02	ci left: 3.491115e-01	ci right 3.624305e-01	k: 7115	n:20000
KS ci ratio: 7.070838e-02	ci left: 1.284701e-01	ci right 1.379368e-01	k: 2663	n:20000
NIPA2   20000 perm   4 sec   (5073 perm/sec)   p_kst 1.331500e-01   p_cons 3.557500e-01   p_joint 2.696500e-01

Outputting figure to mutsig2_images.part000000000114/NIPA2.5_1103_20000_0.13315_0.35575_0.26965.png
                gene_name: NIPA2
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 43 percent done.
NF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.318688e-02	ci left: 7.320922e-01	ci right 7.493674e-01	k: 7408	n:10000
Cons ci ratio: 7.915936e-03	ci left: 9.569143e-01	ci right 9.646143e-01	k: 9609	n:10000
KS ci ratio: 4.340871e-02	ci left: 4.393171e-01	ci right 4.589126e-01	k: 4491	n:10000
NF2   10000 perm   2 sec   (5274 perm/sec)   p_kst 4.491000e-01   p_cons 9.609000e-01   p_joint 7.408000e-01

Outputting figure to mutsig2_images.part000000000114/NF2.4_1892_10000_0.4491_0.9609_0.7408.png
                gene_name: NF2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 45 percent done.
NFE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.035678e-01	ci left: 1.187734e-01	ci right 1.318457e-01	k: 1252	n:10000
Cons ci ratio: 1.511704e-01	ci left: 5.821938e-02	ci right 6.783712e-02	k: 629	n:10000
KS ci ratio: 7.088296e-02	ci left: 2.258292e-01	ci right 2.425259e-01	k: 2341	n:10000
NFE2   10000 perm   2 sec   (5568 perm/sec)   p_kst 2.341000e-01   p_cons 6.290000e-02   p_joint 1.252000e-01

Joint ci ratio: 1.032693e-01	ci left: 6.371945e-02	ci right 7.070702e-02	k: 1343	n:20000
Cons ci ratio: 1.079513e-01	ci left: 5.850174e-02	ci right 6.522634e-02	k: 1236	n:20000
KS ci ratio: 5.210831e-02	ci left: 2.147702e-01	ci right 2.263111e-01	k: 4410	n:20000
NFE2   20000 perm   4 sec   (4685 perm/sec)   p_kst 2.205000e-01   p_cons 6.180000e-02   p_joint 6.715000e-02

Joint ci ratio: 7.017952e-02	ci left: 9.088450e-02	ci right 9.752766e-02	k: 2825	n:30000
Cons ci ratio: 9.101331e-02	ci left: 5.557693e-02	ci right 6.090902e-02	k: 1746	n:30000
KS ci ratio: 4.271832e-02	ci left: 2.144631e-01	ci right 2.238580e-01	k: 6574	n:30000
NFE2   30000 perm   7 sec   (4445 perm/sec)   p_kst 2.191333e-01   p_cons 5.820000e-02   p_joint 9.416667e-02

Outputting figure to mutsig2_images.part000000000114/NFE2.4_1130_30000_0.21913_0.0582_0.094167.png
                gene_name: NFE2
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.098 

Current progress: 47 percent done.
NFE2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.112090e-02	ci left: 2.246444e-01	ci right 2.413115e-01	k: 2329	n:10000
Cons ci ratio: 1.168161e-02	ci left: 9.129648e-01	ci right 9.237900e-01	k: 9185	n:10000
KS ci ratio: 1.073740e-01	ci left: 1.112507e-01	ci right 1.239730e-01	k: 1175	n:10000
NFE2L1   10000 perm   2 sec   (5224 perm/sec)   p_kst 1.175000e-01   p_cons 9.185000e-01   p_joint 2.329000e-01

Joint ci ratio: 5.277655e-02	ci left: 2.104619e-01	ci right 2.219207e-01	k: 4323	n:20000
Cons ci ratio: 8.147698e-03	ci left: 9.166644e-01	ci right 9.242128e-01	k: 18410	n:20000
KS ci ratio: 7.567130e-02	ci left: 1.138056e-01	ci right 1.228057e-01	k: 2365	n:20000
NFE2L1   20000 perm   4 sec   (4657 perm/sec)   p_kst 1.182500e-01   p_cons 9.205000e-01   p_joint 2.161500e-01

Outputting figure to mutsig2_images.part000000000114/NFE2L1.4_2339_20000_0.11825_0.9205_0.21615.png
                gene_name: NFE2L1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 48 percent done.
NFE2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.487514e-02	ci left: 1.682863e-01	ci right 1.833030e-01	k: 1757	n:10000
Cons ci ratio: 1.747592e-01	ci left: 4.370078e-02	ci right 5.216506e-02	k: 478	n:10000
KS ci ratio: 2.480849e-02	ci left: 7.050317e-01	ci right 7.228435e-01	k: 7140	n:10000
NFE2L2   10000 perm   2 sec   (5126 perm/sec)   p_kst 7.140000e-01   p_cons 4.780000e-02   p_joint 1.757000e-01

Joint ci ratio: 6.024545e-02	ci left: 1.694107e-01	ci right 1.799840e-01	k: 3493	n:20000
Cons ci ratio: 1.217843e-01	ci left: 4.624321e-02	ci right 5.228870e-02	k: 984	n:20000
KS ci ratio: 1.758560e-02	ci left: 7.066751e-01	ci right 7.192630e-01	k: 14260	n:20000
NFE2L2   20000 perm   4 sec   (4613 perm/sec)   p_kst 7.130000e-01   p_cons 4.920000e-02   p_joint 1.746500e-01

Joint ci ratio: 4.103925e-02	ci left: 2.283911e-01	ci right 2.379939e-01	k: 6995	n:30000
Cons ci ratio: 9.878843e-02	ci left: 4.739802e-02	ci right 5.235628e-02	k: 1495	n:30000
KS ci ratio: 1.425701e-02	ci left: 7.107593e-01	ci right 7.209988e-01	k: 21477	n:30000
NFE2L2   30000 perm   7 sec   (4416 perm/sec)   p_kst 7.159000e-01   p_cons 4.983333e-02   p_joint 2.331667e-01

Outputting figure to mutsig2_images.part000000000114/NFE2L2.4_1838_30000_0.7159_0.049833_0.23317.png
                gene_name: NFE2L2
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 50 percent done.
NFIC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.447480e-02	ci left: 7.105819e-01	ci right 7.282901e-01	k: 7195	n:10000
KS ci ratio: 1.769192e-02	ci left: 8.233055e-01	ci right 8.381013e-01	k: 8308	n:10000
NFIC   10000 perm   2 sec   (4825 perm/sec)   p_kst 8.308000e-01   p_cons 7.195000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NFIC.4_1578_10000_0.8308_0.7195_1.png
                gene_name: NFIC
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
NFKB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.857979e-02	ci left: 4.980503e-01	ci right 5.177451e-01	k: 5079	n:10000
Cons ci ratio: 8.165271e-02	ci left: 1.795967e-01	ci right 1.949860e-01	k: 1872	n:10000
KS ci ratio: 2.050926e-02	ci left: 7.769169e-01	ci right 7.931167e-01	k: 7851	n:10000
NFKB2   10000 perm   2 sec   (4832 perm/sec)   p_kst 7.851000e-01   p_cons 1.872000e-01   p_joint 5.079000e-01

Outputting figure to mutsig2_images.part000000000114/NFKB2.4_2791_10000_0.7851_0.1872_0.5079.png
                gene_name: NFKB2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 53 percent done.
NHEDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.018115e-02	ci left: 1.851083e-01	ci right 2.006710e-01	k: 1928	n:10000
Cons ci ratio: 2.266192e-02	ci left: 7.408856e-01	ci right 7.579689e-01	k: 7495	n:10000
KS ci ratio: 1.177263e-01	ci left: 9.389515e-02	ci right 1.057391e-01	k: 997	n:10000
NHEDC1   10000 perm   2 sec   (5550 perm/sec)   p_kst 9.970000e-02   p_cons 7.495000e-01   p_joint 1.928000e-01

Joint ci ratio: 5.403829e-02	ci left: 2.026402e-01	ci right 2.139448e-01	k: 4165	n:20000
Cons ci ratio: 1.615681e-02	ci left: 7.403098e-01	ci right 7.524185e-01	k: 14928	n:20000
KS ci ratio: 8.361947e-02	ci left: 9.484527e-02	ci right 1.031717e-01	k: 1979	n:20000
NHEDC1   20000 perm   4 sec   (4930 perm/sec)   p_kst 9.895000e-02   p_cons 7.464000e-01   p_joint 2.082500e-01

Outputting figure to mutsig2_images.part000000000114/NHEDC1.4_1692_20000_0.09895_0.7464_0.20825.png
                gene_name: NHEDC1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 55 percent done.
NHSL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.460297e-02	ci left: 2.603270e-01	ci right 2.778077e-01	k: 2690	n:10000
Cons ci ratio: 5.060454e-03	ci left: 9.810225e-01	ci right 9.860902e-01	k: 9837	n:10000
KS ci ratio: 8.760919e-02	ci left: 1.594429e-01	ci right 1.741517e-01	k: 1667	n:10000
NHSL2   10000 perm   2 sec   (4877 perm/sec)   p_kst 1.667000e-01   p_cons 9.837000e-01   p_joint 2.690000e-01

Outputting figure to mutsig2_images.part000000000114/NHSL2.4_3708_10000_0.1667_0.9837_0.269.png
                gene_name: NHSL2
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 57 percent done.
NEUROD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.383382e-02	ci left: 8.829867e-01	ci right 8.953856e-01	k: 8893	n:10000
Cons ci ratio: 3.453175e-02	ci left: 5.532111e-01	ci right 5.727522e-01	k: 5630	n:10000
KS ci ratio: 1.173608e-02	ci left: 9.122441e-01	ci right 9.231112e-01	k: 9178	n:10000
NEUROD1   10000 perm   2 sec   (6343 perm/sec)   p_kst 9.178000e-01   p_cons 5.630000e-01   p_joint 8.893000e-01

Outputting figure to mutsig2_images.part000000000114/NEUROD1.3_1075_10000_0.9178_0.563_0.8893.png
                gene_name: NEUROD1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 59 percent done.
NFE2L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.875699e-02	ci left: 2.367933e-01	ci right 2.537553e-01	k: 2452	n:10000
Cons ci ratio: 9.331165e-02	ci left: 1.429561e-01	ci right 1.570484e-01	k: 1499	n:10000
KS ci ratio: 4.493169e-02	ci left: 4.223619e-01	ci right 4.418776e-01	k: 4321	n:10000
NFE2L3   10000 perm   2 sec   (5509 perm/sec)   p_kst 4.321000e-01   p_cons 1.499000e-01   p_joint 2.452000e-01

Outputting figure to mutsig2_images.part000000000114/NFE2L3.3_2101_10000_0.4321_0.1499_0.2452.png
                gene_name: NFE2L3
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 60 percent done.
NFIL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.784639e-02	ci left: 3.055038e-01	ci right 3.238042e-01	k: 3146	n:10000
KS ci ratio: 1.517575e-02	ci left: 8.629443e-01	ci right 8.762395e-01	k: 8697	n:10000
NFIL3   10000 perm   2 sec   (6243 perm/sec)   p_kst 8.697000e-01   p_cons 3.146000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NFIL3.3_1393_10000_0.8697_0.3146_1.png
                gene_name: NFIL3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
NFKBIZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.024770e-02	ci left: 9.311281e-01	ci right 9.408160e-01	k: 9361	n:10000
KS ci ratio: 2.080668e-02	ci left: 7.719526e-01	ci right 7.882839e-01	k: 7802	n:10000
NFKBIZ   10000 perm   2 sec   (5711 perm/sec)   p_kst 7.802000e-01   p_cons 9.361000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NFKBIZ.3_2205_10000_0.7802_0.9361_1.png
                gene_name: NFKBIZ
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
NFYA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.133002e-01	ci left: 1.008116e-01	ci right 1.130184e-01	k: 1068	n:10000
Cons ci ratio: 1.494065e-01	ci left: 5.956990e-02	ci right 6.928573e-02	k: 643	n:10000
KS ci ratio: 9.169905e-02	ci left: 1.473694e-01	ci right 1.616325e-01	k: 1544	n:10000
NFYA   10000 perm   1 sec   (6842 perm/sec)   p_kst 1.544000e-01   p_cons 6.430000e-02   p_joint 1.068000e-01

Joint ci ratio: 9.425271e-02	ci left: 7.583612e-02	ci right 8.338663e-02	k: 1591	n:20000
Cons ci ratio: 1.068507e-01	ci left: 5.967148e-02	ci right 6.645624e-02	k: 1260	n:20000
KS ci ratio: 6.541894e-02	ci left: 1.471981e-01	ci right 1.572032e-01	k: 3043	n:20000
NFYA   20000 perm   4 sec   (5587 perm/sec)   p_kst 1.521500e-01   p_cons 6.300000e-02   p_joint 7.955000e-02

Joint ci ratio: 7.757691e-02	ci left: 7.538256e-02	ci right 8.149937e-02	k: 2352	n:30000
Cons ci ratio: 8.713328e-02	ci left: 6.043968e-02	ci right 6.597862e-02	k: 1895	n:30000
KS ci ratio: 5.346297e-02	ci left: 1.478886e-01	ci right 1.560456e-01	k: 4558	n:30000
NFYA   30000 perm   6 sec   (5353 perm/sec)   p_kst 1.519333e-01   p_cons 6.316667e-02   p_joint 7.840000e-02

Outputting figure to mutsig2_images.part000000000114/NFYA.3_1080_30000_0.15193_0.063167_0.0784.png
                gene_name: NFYA
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.081 

Current progress: 66 percent done.
NFYC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.648497e-02	ci left: 4.058169e-01	ci right 4.252323e-01	k: 4155	n:10000
Cons ci ratio: 3.318984e-02	ci left: 5.726613e-01	ci right 5.920907e-01	k: 5824	n:10000
KS ci ratio: 6.814967e-02	ci left: 2.400544e-01	ci right 2.570923e-01	k: 2485	n:10000
NFYC   10000 perm   2 sec   (6019 perm/sec)   p_kst 2.485000e-01   p_cons 5.824000e-01   p_joint 4.155000e-01

Outputting figure to mutsig2_images.part000000000114/NFYC.3_1105_10000_0.2485_0.5824_0.4155.png
                gene_name: NFYC
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 67 percent done.
NGB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.515890e-03	ci left: 9.698435e-01	ci right 9.762769e-01	k: 9732	n:10000
Cons ci ratio: 2.406905e-02	ci left: 7.173453e-01	ci right 7.349227e-01	k: 7262	n:10000
KS ci ratio: 2.610772e-02	ci left: 6.835521e-01	ci right 7.017356e-01	k: 6927	n:10000
NGB   10000 perm   2 sec   (6184 perm/sec)   p_kst 6.927000e-01   p_cons 7.262000e-01   p_joint 9.732000e-01

Outputting figure to mutsig2_images.part000000000114/NGB.3_472_10000_0.6927_0.7262_0.9732.png
                gene_name: NGB
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 69 percent done.
NGFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
Cons ci ratio: 2.672870e-02	ci left: 6.733749e-01	ci right 6.917187e-01	k: 6826	n:10000
KS ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
NGFR   10000 perm   2 sec   (5940 perm/sec)   p_kst 9.800000e-03   p_cons 6.826000e-01   p_joint 3.560000e-02

Joint ci ratio: 1.588432e-01	ci left: 2.719860e-02	ci right 3.193948e-02	k: 590	n:20000
Cons ci ratio: 1.941070e-02	ci left: 6.643886e-01	ci right 6.774617e-01	k: 13419	n:20000
KS ci ratio: 2.730449e-01	ci left: 8.807415e-03	ci right 1.163770e-02	k: 203	n:20000
NGFR   20000 perm   4 sec   (5196 perm/sec)   p_kst 1.015000e-02   p_cons 6.709500e-01   p_joint 2.950000e-02

Joint ci ratio: 8.595369e-02	ci left: 6.203992e-02	ci right 6.764471e-02	k: 1944	n:30000
Cons ci ratio: 1.588906e-02	ci left: 6.644789e-01	ci right 6.751549e-01	k: 20095	n:30000
KS ci ratio: 2.183043e-01	ci left: 9.472069e-03	ci right 1.182415e-02	k: 318	n:30000
NGFR   30000 perm   6 sec   (4907 perm/sec)   p_kst 1.060000e-02   p_cons 6.698333e-01   p_joint 6.480000e-02

Joint ci ratio: 7.778527e-02	ci left: 5.737311e-02	ci right 6.204106e-02	k: 2387	n:40000
Cons ci ratio: 1.377000e-02	ci left: 6.648906e-01	ci right 6.741347e-01	k: 26781	n:40000
KS ci ratio: 1.921250e-01	ci left: 9.309929e-03	ci right 1.131212e-02	k: 411	n:40000
NGFR   40000 perm   8 sec   (4734 perm/sec)   p_kst 1.027500e-02   p_cons 6.695250e-01   p_joint 5.967500e-02

Joint ci ratio: 8.869128e-02	ci left: 3.592994e-02	ci right 3.928402e-02	k: 1879	n:50000
Cons ci ratio: 1.232981e-02	ci left: 6.648957e-01	ci right 6.731646e-01	k: 33452	n:50000
KS ci ratio: 1.735529e-01	ci left: 9.222959e-03	ci right 1.099461e-02	k: 504	n:50000
NGFR   50000 perm   11 sec   (4600 perm/sec)   p_kst 1.008000e-02   p_cons 6.690400e-01   p_joint 3.758000e-02

Joint ci ratio: 9.337804e-02	ci left: 2.719937e-02	ci right 2.987982e-02	k: 1711	n:60000
Cons ci ratio: 1.127479e-02	ci left: 6.644996e-01	ci right 6.720508e-01	k: 40097	n:60000
KS ci ratio: 1.581682e-01	ci left: 9.331373e-03	ci right 1.094987e-02	k: 607	n:60000
NGFR   60000 perm   13 sec   (4491 perm/sec)   p_kst 1.011667e-02   p_cons 6.682833e-01   p_joint 2.851667e-02

Joint ci ratio: 7.034960e-02	ci left: 4.097533e-02	ci right 4.397703e-02	k: 2972	n:70000
Cons ci ratio: 1.006944e-02	ci left: 6.805842e-01	ci right 6.874862e-01	k: 47883	n:70000
KS ci ratio: 1.482766e-01	ci left: 9.152280e-03	ci right 1.063163e-02	k: 691	n:70000
NGFR   70000 perm   16 sec   (4390 perm/sec)   p_kst 9.871429e-03   p_cons 6.840429e-01   p_joint 4.245714e-02

Joint ci ratio: 6.601652e-02	ci left: 4.081723e-02	ci right 4.361609e-02	k: 3376	n:80000
Cons ci ratio: 9.420046e-03	ci left: 6.807655e-01	ci right 6.872212e-01	k: 54720	n:80000
KS ci ratio: 1.385108e-01	ci left: 9.225511e-03	ci right 1.061038e-02	k: 792	n:80000
NGFR   80000 perm   19 sec   (4292 perm/sec)   p_kst 9.900000e-03   p_cons 6.840000e-01   p_joint 4.220000e-02

Joint ci ratio: 6.599548e-02	ci left: 3.647592e-02	ci right 3.897621e-02	k: 3394	n:90000
Cons ci ratio: 8.881769e-03	ci left: 6.809289e-01	ci right 6.870148e-01	k: 61558	n:90000
KS ci ratio: 1.321791e-01	ci left: 9.037725e-03	ci right 1.032751e-02	k: 870	n:90000
NGFR   90000 perm   21 sec   (4207 perm/sec)   p_kst 9.666667e-03   p_cons 6.839778e-01   p_joint 3.771111e-02

Joint ci ratio: 6.031308e-02	ci left: 3.930626e-02	ci right 4.176048e-02	k: 4052	n:100000
Cons ci ratio: 8.420297e-03	ci left: 6.813788e-01	ci right 6.871505e-01	k: 68427	n:100000
KS ci ratio: 1.257099e-01	ci left: 9.024282e-03	ci right 1.024441e-02	k: 962	n:100000
NGFR   100000 perm   24 sec   (4127 perm/sec)   p_kst 9.620000e-03   p_cons 6.842700e-01   p_joint 4.052000e-02

Joint ci ratio: 6.211099e-02	ci left: 3.385900e-02	ci right 3.603834e-02	k: 3843	n:110000
Cons ci ratio: 8.014883e-03	ci left: 6.822455e-01	ci right 6.877447e-01	k: 75350	n:110000
KS ci ratio: 1.206850e-01	ci left: 8.926351e-03	ci right 1.008155e-02	k: 1044	n:110000
NGFR   110000 perm   27 sec   (4051 perm/sec)   p_kst 9.490909e-03   p_cons 6.850000e-01   p_joint 3.493636e-02

Joint ci ratio: 6.170069e-02	ci left: 3.153669e-02	ci right 3.355265e-02	k: 3904	n:120000
Cons ci ratio: 7.682562e-03	ci left: 6.818621e-01	ci right 6.871290e-01	k: 82140	n:120000
KS ci ratio: 1.157523e-01	ci left: 8.918399e-03	ci right 1.002217e-02	k: 1135	n:120000
NGFR   120000 perm   30 sec   (3975 perm/sec)   p_kst 9.458333e-03   p_cons 6.845000e-01   p_joint 3.253333e-02

Joint ci ratio: 5.736920e-02	ci left: 3.367373e-02	ci right 3.567017e-02	k: 4506	n:130000
Cons ci ratio: 7.377095e-03	ci left: 6.822049e-01	ci right 6.872638e-01	k: 89016	n:130000
KS ci ratio: 1.106978e-01	ci left: 9.024694e-03	ci right 1.008966e-02	k: 1241	n:130000
NGFR   130000 perm   33 sec   (3903 perm/sec)   p_kst 9.546154e-03   p_cons 6.847385e-01   p_joint 3.466154e-02

Joint ci ratio: 5.336799e-02	ci left: 3.611596e-02	ci right 3.810327e-02	k: 5194	n:140000
Cons ci ratio: 7.107853e-03	ci left: 6.823518e-01	ci right 6.872263e-01	k: 95871	n:140000
KS ci ratio: 1.085950e-01	ci left: 8.720399e-03	ci right 9.728657e-03	k: 1290	n:140000
NGFR   140000 perm   36 sec   (3839 perm/sec)   p_kst 9.214286e-03   p_cons 6.847929e-01   p_joint 3.710000e-02

Joint ci ratio: 5.108871e-02	ci left: 3.680098e-02	ci right 3.873694e-02	k: 5664	n:150000
Cons ci ratio: 6.865455e-03	ci left: 6.825221e-01	ci right 6.872307e-01	k: 102732	n:150000
KS ci ratio: 1.049592e-01	ci left: 8.729507e-03	ci right 9.702939e-03	k: 1381	n:150000
NGFR   150000 perm   40 sec   (3775 perm/sec)   p_kst 9.206667e-03   p_cons 6.848800e-01   p_joint 3.776000e-02

Joint ci ratio: 5.159199e-02	ci left: 3.392581e-02	ci right 3.572860e-02	k: 5571	n:160000
Cons ci ratio: 6.647431e-03	ci left: 6.825985e-01	ci right 6.871573e-01	k: 109581	n:160000
KS ci ratio: 1.018054e-01	ci left: 8.713600e-03	ci right 9.654315e-03	k: 1468	n:160000
NGFR   160000 perm   43 sec   (3713 perm/sec)   p_kst 9.175000e-03   p_cons 6.848812e-01   p_joint 3.481875e-02

Joint ci ratio: 4.514973e-02	ci left: 4.149939e-02	ci right 4.342214e-02	k: 7217	n:170000
Cons ci ratio: 6.452368e-03	ci left: 6.824381e-01	ci right 6.868615e-01	k: 116391	n:170000
KS ci ratio: 9.891982e-02	ci left: 8.699951e-03	ci right 9.611024e-03	k: 1555	n:170000
NGFR   170000 perm   47 sec   (3653 perm/sec)   p_kst 9.147059e-03   p_cons 6.846529e-01   p_joint 4.245294e-02

Outputting figure to mutsig2_images.part000000000114/NGFR.3_1308_170000_0.0091471_0.68465_0.042453.png
                gene_name: NGFR
               theta_stop: 0.099 
                    nperm: 170000 
                     p_ks: 0.0091 
        ci_ks_bounds_left: 0.0087 
       ci_ks_bounds_right: 0.0096 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.043 

Current progress: 71 percent done.
NGLY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.392529e-02	ci left: 5.619317e-01	ci right 5.814265e-01	k: 5717	n:10000
Cons ci ratio: 4.563429e-02	ci left: 4.147857e-01	ci right 4.342583e-01	k: 4245	n:10000
KS ci ratio: 3.528161e-02	ci left: 5.425901e-01	ci right 5.621794e-01	k: 5524	n:10000
NGLY1   10000 perm   2 sec   (5680 perm/sec)   p_kst 5.524000e-01   p_cons 4.245000e-01   p_joint 5.717000e-01

Outputting figure to mutsig2_images.part000000000114/NGLY1.3_2118_10000_0.5524_0.4245_0.5717.png
                gene_name: NGLY1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 72 percent done.
NHEJ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.850717e-02	ci left: 1.299255e-01	ci right 1.434869e-01	k: 1366	n:10000
Cons ci ratio: 1.086341e-01	ci left: 1.089077e-01	ci right 1.215175e-01	k: 1151	n:10000
KS ci ratio: 1.097680e-01	ci left: 1.068582e-01	ci right 1.193681e-01	k: 1130	n:10000
NHEJ1   10000 perm   2 sec   (5708 perm/sec)   p_kst 1.130000e-01   p_cons 1.151000e-01   p_joint 1.366000e-01

Joint ci ratio: 8.939873e-02	ci left: 8.376601e-02	ci right 9.165433e-02	k: 1753	n:20000
Cons ci ratio: 7.740712e-02	ci left: 1.092336e-01	ci right 1.180791e-01	k: 2272	n:20000
KS ci ratio: 7.866204e-02	ci left: 1.060886e-01	ci right 1.148250e-01	k: 2208	n:20000
NHEJ1   20000 perm   4 sec   (5315 perm/sec)   p_kst 1.104000e-01   p_cons 1.136000e-01   p_joint 8.765000e-02

Outputting figure to mutsig2_images.part000000000114/NHEJ1.3_928_20000_0.1104_0.1136_0.08765.png
                gene_name: NHEJ1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.092 

Current progress: 74 percent done.
NHLRC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.659211e-02	ci left: 5.244645e-01	ci right 5.441155e-01	k: 5343	n:10000
Cons ci ratio: 3.287702e-02	ci left: 5.772755e-01	ci right 5.966738e-01	k: 5870	n:10000
KS ci ratio: 4.462184e-02	ci left: 4.257520e-01	ci right 4.452856e-01	k: 4355	n:10000
NHLRC3   10000 perm   2 sec   (6545 perm/sec)   p_kst 4.355000e-01   p_cons 5.870000e-01   p_joint 5.343000e-01

Outputting figure to mutsig2_images.part000000000114/NHLRC3.3_1072_10000_0.4355_0.587_0.5343.png
                gene_name: NHLRC3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 76 percent done.
NINJ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.344901e-03	ci left: 9.417001e-01	ci right 9.506377e-01	k: 9463	n:10000
KS ci ratio: 3.223032e-02	ci left: 5.869078e-01	ci right 6.062359e-01	k: 5966	n:10000
NINJ2   10000 perm   1 sec   (6776 perm/sec)   p_kst 5.966000e-01   p_cons 9.463000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NINJ2.3_579_10000_0.5966_0.9463_1.png
                gene_name: NINJ2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
NEUROD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.299014e-02	ci left: 4.441065e-01	ci right 4.637203e-01	k: 4539	n:10000
KS ci ratio: 3.103856e-02	ci left: 6.049788e-01	ci right 6.241544e-01	k: 6146	n:10000
NEUROD6   10000 perm   2 sec   (6338 perm/sec)   p_kst 6.146000e-01   p_cons 4.539000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NEUROD6.2_1018_10000_0.6146_0.4539_1.png
                gene_name: NEUROD6
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
NEUROG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.690887e-01	ci left: 4.667345e-02	ci right 5.539046e-02	k: 509	n:10000
KS ci ratio: 5.896462e-02	ci left: 2.973720e-01	ci right 3.155408e-01	k: 3064	n:10000
NEUROG3   10000 perm   1 sec   (7194 perm/sec)   p_kst 3.064000e-01   p_cons 5.090000e-02   p_joint 1

Joint ci ratio: 2.509357e-02	ci left: 5.426228e-01	ci right 5.564628e-01	k: 10991	n:20000
Cons ci ratio: 1.206928e-01	ci left: 4.706865e-02	ci right 5.316299e-02	k: 1001	n:20000
KS ci ratio: 4.206509e-02	ci left: 2.963368e-01	ci right 3.091206e-01	k: 6054	n:20000
NEUROG3   20000 perm   3 sec   (6202 perm/sec)   p_kst 3.027000e-01   p_cons 5.005000e-02   p_joint 5.495500e-01

Joint ci ratio: 2.167219e-02	ci left: 5.159622e-01	ci right 5.273003e-01	k: 15649	n:30000
Cons ci ratio: 9.813429e-02	ci left: 4.801652e-02	ci right 5.300432e-02	k: 1514	n:30000
KS ci ratio: 3.429053e-02	ci left: 2.982004e-01	ci right 3.086377e-01	k: 9102	n:30000
NEUROG3   30000 perm   5 sec   (5837 perm/sec)   p_kst 3.034000e-01   p_cons 5.046667e-02   p_joint 5.216333e-01

Outputting figure to mutsig2_images.part000000000114/NEUROG3.2_649_30000_0.3034_0.050467_0.52163.png
                gene_name: NEUROG3
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 81 percent done.
NFATC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.907924e-01	ci left: 3.662531e-02	ci right 4.444524e-02	k: 404	n:10000
Cons ci ratio: 4.157017e-02	ci left: 4.607769e-01	ci right 4.804402e-01	k: 4706	n:10000
KS ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
NFATC1   10000 perm   2 sec   (5365 perm/sec)   p_kst 9.200000e-03   p_cons 4.706000e-01   p_joint 4.040000e-02

Joint ci ratio: 6.755281e-02	ci left: 1.392105e-01	ci right 1.489932e-01	k: 2881	n:20000
Cons ci ratio: 2.920004e-02	ci left: 4.670091e-01	ci right 4.808985e-01	k: 9479	n:20000
KS ci ratio: 2.800644e-01	ci left: 8.341806e-03	ci right 1.110354e-02	k: 193	n:20000
NFATC1   20000 perm   4 sec   (4755 perm/sec)   p_kst 9.650000e-03   p_cons 4.739500e-01   p_joint 1.440500e-01

Joint ci ratio: 6.539274e-02	ci left: 1.034579e-01	ci right 1.104851e-01	k: 3208	n:30000
Cons ci ratio: 2.403528e-02	ci left: 4.642721e-01	ci right 4.756004e-01	k: 14098	n:30000
KS ci ratio: 2.278841e-01	ci left: 8.653395e-03	ci right 1.090973e-02	k: 292	n:30000
NFATC1   30000 perm   7 sec   (4533 perm/sec)   p_kst 9.733333e-03   p_cons 4.699333e-01   p_joint 1.069333e-01

Joint ci ratio: 6.039773e-02	ci left: 9.239012e-02	ci right 9.816879e-02	k: 3810	n:40000
Cons ci ratio: 2.082206e-02	ci left: 4.648739e-01	ci right 4.746805e-01	k: 18791	n:40000
KS ci ratio: 2.006657e-01	ci left: 8.501350e-03	ci right 1.042088e-02	k: 377	n:40000
NFATC1   40000 perm   9 sec   (4396 perm/sec)   p_kst 9.425000e-03   p_cons 4.697750e-01   p_joint 9.525000e-02

Joint ci ratio: 4.321988e-02	ci left: 1.382181e-01	ci right 1.443437e-01	k: 7063	n:50000
Cons ci ratio: 1.865296e-02	ci left: 4.646177e-01	ci right 4.733859e-01	k: 23450	n:50000
KS ci ratio: 1.771309e-01	ci left: 8.840360e-03	ci right 1.057728e-02	k: 484	n:50000
NFATC1   50000 perm   12 sec   (4279 perm/sec)   p_kst 9.680000e-03   p_cons 4.690000e-01   p_joint 1.412600e-01

Joint ci ratio: 3.051430e-02	ci left: 2.124144e-01	ci right 2.190131e-01	k: 12942	n:60000
Cons ci ratio: 1.704551e-02	ci left: 4.644838e-01	ci right 4.724859e-01	k: 28109	n:60000
KS ci ratio: 1.624038e-01	ci left: 8.835245e-03	ci right 1.041273e-02	k: 576	n:60000
NFATC1   60000 perm   14 sec   (4182 perm/sec)   p_kst 9.600000e-03   p_cons 4.684833e-01   p_joint 2.157000e-01

Joint ci ratio: 2.397610e-02	ci left: 2.730180e-01	ci right 2.796576e-01	k: 19343	n:70000
Cons ci ratio: 1.576206e-02	ci left: 4.653830e-01	ci right 4.727910e-01	k: 32836	n:70000
KS ci ratio: 1.497034e-01	ci left: 8.973428e-03	ci right 1.043907e-02	k: 678	n:70000
NFATC1   70000 perm   17 sec   (4096 perm/sec)   p_kst 9.685714e-03   p_cons 4.690857e-01   p_joint 2.763286e-01

Joint ci ratio: 1.708202e-02	ci left: 3.935572e-01	ci right 4.003503e-01	k: 31756	n:80000
Cons ci ratio: 1.475553e-02	ci left: 4.652370e-01	ci right 4.721653e-01	k: 37496	n:80000
KS ci ratio: 1.395814e-01	ci left: 9.080683e-03	ci right 1.045522e-02	k: 780	n:80000
NFATC1   80000 perm   20 sec   (4008 perm/sec)   p_kst 9.750000e-03   p_cons 4.687000e-01   p_joint 3.969500e-01

Joint ci ratio: 1.609299e-02	ci left: 3.941119e-01	ci right 4.005169e-01	k: 35758	n:90000
Cons ci ratio: 1.390113e-02	ci left: 4.658129e-01	ci right 4.723446e-01	k: 42217	n:90000
KS ci ratio: 1.301571e-01	ci left: 9.327970e-03	ci right 1.063724e-02	k: 897	n:90000
NFATC1   90000 perm   23 sec   (3925 perm/sec)   p_kst 9.966667e-03   p_cons 4.690778e-01   p_joint 3.973111e-01

Joint ci ratio: 1.526818e-02	ci left: 3.942451e-01	ci right 4.003208e-01	k: 39728	n:100000
Cons ci ratio: 1.318111e-02	ci left: 4.662328e-01	ci right 4.724290e-01	k: 46933	n:100000
KS ci ratio: 1.234017e-01	ci left: 9.373167e-03	ci right 1.061550e-02	k: 998	n:100000
NFATC1   100000 perm   26 sec   (3821 perm/sec)   p_kst 9.980000e-03   p_cons 4.693300e-01   p_joint 3.972800e-01

Joint ci ratio: 1.500434e-02	ci left: 3.800260e-01	ci right 3.857802e-01	k: 42119	n:110000
Cons ci ratio: 1.256756e-02	ci left: 4.663835e-01	ci right 4.722909e-01	k: 51627	n:110000
KS ci ratio: 1.174378e-01	ci left: 9.438065e-03	ci right 1.062435e-02	k: 1102	n:110000
NFATC1   110000 perm   29 sec   (3751 perm/sec)   p_kst 1.001818e-02   p_cons 4.693364e-01   p_joint 3.829000e-01

Joint ci ratio: 1.452108e-02	ci left: 3.750806e-01	ci right 3.805753e-01	k: 45339	n:120000
Cons ci ratio: 1.202315e-02	ci left: 4.668978e-01	ci right 4.725536e-01	k: 56367	n:120000
KS ci ratio: 1.116569e-01	ci left: 9.598678e-03	ci right 1.074185e-02	k: 1219	n:120000
NFATC1   120000 perm   33 sec   (3688 perm/sec)   p_kst 1.015833e-02   p_cons 4.697250e-01   p_joint 3.778250e-01

Joint ci ratio: 1.669944e-02	ci left: 2.951921e-01	ci right 3.001708e-01	k: 38698	n:130000
Cons ci ratio: 1.155331e-02	ci left: 4.669300e-01	ci right 4.723636e-01	k: 61054	n:130000
KS ci ratio: 1.070585e-01	ci left: 9.660902e-03	ci right 1.076111e-02	k: 1326	n:130000
NFATC1   130000 perm   36 sec   (3630 perm/sec)   p_kst 1.020000e-02   p_cons 4.696462e-01   p_joint 2.976769e-01

Joint ci ratio: 1.587391e-02	ci left: 3.010066e-01	ci right 3.058301e-01	k: 42478	n:140000
Cons ci ratio: 1.112994e-02	ci left: 4.671685e-01	ci right 4.724042e-01	k: 65770	n:140000
KS ci ratio: 1.034232e-01	ci left: 9.631542e-03	ci right 1.068889e-02	k: 1421	n:140000
NFATC1   140000 perm   39 sec   (3574 perm/sec)   p_kst 1.015000e-02   p_cons 4.697857e-01   p_joint 3.034143e-01

Joint ci ratio: 1.551830e-02	ci left: 2.961183e-01	ci right 3.007561e-01	k: 44765	n:150000
Cons ci ratio: 1.074520e-02	ci left: 4.675981e-01	ci right 4.726563e-01	k: 70519	n:150000
KS ci ratio: 9.973695e-02	ci left: 9.684664e-03	ci right 1.070773e-02	k: 1528	n:150000
NFATC1   150000 perm   43 sec   (3520 perm/sec)   p_kst 1.018667e-02   p_cons 4.701267e-01   p_joint 2.984333e-01

Outputting figure to mutsig2_images.part000000000114/NFATC1.2_3023_150000_0.010187_0.47013_0.29843.png
                gene_name: NFATC1
               theta_stop: 0.100 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0097 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.30 

Current progress: 83 percent done.
NFKBIE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.304220e-02	ci left: 4.435078e-01	ci right 4.631194e-01	k: 4533	n:10000
Cons ci ratio: 5.290821e-02	ci left: 3.449190e-01	ci right 3.637659e-01	k: 3543	n:10000
KS ci ratio: 2.989034e-02	ci left: 6.227620e-01	ci right 6.417609e-01	k: 6323	n:10000
NFKBIE   10000 perm   2 sec   (5831 perm/sec)   p_kst 6.323000e-01   p_cons 3.543000e-01   p_joint 4.533000e-01

Outputting figure to mutsig2_images.part000000000114/NFKBIE.2_1527_10000_0.6323_0.3543_0.4533.png
                gene_name: NFKBIE
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 84 percent done.
NFS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.280271e-02	ci left: 1.443289e-01	ci right 1.584748e-01	k: 1513	n:10000
Cons ci ratio: 9.943597e-02	ci left: 1.277721e-01	ci right 1.412416e-01	k: 1344	n:10000
KS ci ratio: 9.863257e-02	ci left: 1.296319e-01	ci right 1.431807e-01	k: 1363	n:10000
NFS1   10000 perm   2 sec   (5840 perm/sec)   p_kst 1.363000e-01   p_cons 1.344000e-01   p_joint 1.513000e-01

Outputting figure to mutsig2_images.part000000000114/NFS1.2_1426_10000_0.1363_0.1344_0.1513.png
                gene_name: NFS1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 86 percent done.
NGF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.204644e-02	ci left: 7.512008e-01	ci right 7.680477e-01	k: 7597	n:10000
KS ci ratio: 1.622981e-02	ci left: 8.466204e-01	ci right 8.605729e-01	k: 8537	n:10000
NGF   10000 perm   2 sec   (6172 perm/sec)   p_kst 8.537000e-01   p_cons 7.597000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NGF.2_730_10000_0.8537_0.7597_1.png
                gene_name: NGF
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
NGRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.209660e-02	ci left: 5.889150e-01	ci right 6.082275e-01	k: 5986	n:10000
Cons ci ratio: 3.453175e-02	ci left: 5.532111e-01	ci right 5.727522e-01	k: 5630	n:10000
KS ci ratio: 2.336195e-02	ci left: 7.291621e-01	ci right 7.464992e-01	k: 7379	n:10000
NGRN   10000 perm   1 sec   (6926 perm/sec)   p_kst 7.379000e-01   p_cons 5.630000e-01   p_joint 5.986000e-01

Outputting figure to mutsig2_images.part000000000114/NGRN.2_888_10000_0.7379_0.563_0.5986.png
                gene_name: NGRN
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 90 percent done.
NHLRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.130330e-02	ci left: 7.636486e-01	ci right 7.801928e-01	k: 7720	n:10000
Cons ci ratio: 4.297280e-02	ci left: 4.443061e-01	ci right 4.639206e-01	k: 4541	n:10000
KS ci ratio: 2.371229e-02	ci left: 7.233032e-01	ci right 7.407614e-01	k: 7321	n:10000
NHLRC1   10000 perm   2 sec   (5906 perm/sec)   p_kst 7.321000e-01   p_cons 4.541000e-01   p_joint 7.720000e-01

Outputting figure to mutsig2_images.part000000000114/NHLRC1.2_1192_10000_0.7321_0.4541_0.772.png
                gene_name: NHLRC1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 91 percent done.
NHLRC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.369728e-02	ci left: 5.652404e-01	ci right 5.847159e-01	k: 5750	n:10000
KS ci ratio: 1.742078e-02	ci left: 8.276794e-01	ci right 8.423249e-01	k: 8351	n:10000
NHLRC2   10000 perm   2 sec   (5709 perm/sec)   p_kst 8.351000e-01   p_cons 5.750000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NHLRC2.2_2225_10000_0.8351_0.575_1.png
                gene_name: NHLRC2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
NICN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.428683e-02	ci left: 5.567190e-01	ci right 5.762422e-01	k: 5665	n:10000
Cons ci ratio: 3.163782e-02	ci left: 5.958412e-01	ci right 6.150973e-01	k: 6055	n:10000
KS ci ratio: 2.574656e-02	ci left: 6.894995e-01	ci right 7.075847e-01	k: 6986	n:10000
NICN1   10000 perm   2 sec   (5379 perm/sec)   p_kst 6.986000e-01   p_cons 6.055000e-01   p_joint 5.665000e-01

Outputting figure to mutsig2_images.part000000000114/NICN1.2_666_10000_0.6986_0.6055_0.5665.png
                gene_name: NICN1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 95 percent done.
NINJ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.042617e-02	ci left: 9.289561e-01	ci right 9.387893e-01	k: 9340	n:10000
KS ci ratio: 3.785336e-02	ci left: 5.075522e-01	ci right 5.272376e-01	k: 5174	n:10000
NINJ1   10000 perm   1 sec   (7211 perm/sec)   p_kst 5.174000e-01   p_cons 9.340000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NINJ1.2_471_10000_0.5174_0.934_1.png
                gene_name: NINJ1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
NIP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.378463e-02	ci left: 8.837035e-01	ci right 8.960683e-01	k: 8900	n:10000
KS ci ratio: 1.960686e-02	ci left: 7.919218e-01	ci right 8.077031e-01	k: 7999	n:10000
NIP7   10000 perm   1 sec   (6934 perm/sec)   p_kst 7.999000e-01   p_cons 8.900000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000114/NIP7.2_563_10000_0.7999_0.89_1.png
                gene_name: NIP7
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
NIPAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.016804e-01	ci left: 3.271977e-02	ci right 4.015343e-02	k: 363	n:10000
Cons ci ratio: 1.444354e-01	ci left: 6.362530e-02	ci right 7.362777e-02	k: 685	n:10000
KS ci ratio: 2.663449e-01	ci left: 1.837333e-02	ci right 2.411031e-02	k: 211	n:10000
NIPAL2   10000 perm   2 sec   (6484 perm/sec)   p_kst 2.110000e-02   p_cons 6.850000e-02   p_joint 3.630000e-02

Joint ci ratio: 1.911204e-01	ci left: 1.862872e-02	ci right 2.261236e-02	k: 411	n:20000
Cons ci ratio: 1.032282e-01	ci left: 6.376824e-02	ci right 7.075821e-02	k: 1344	n:20000
KS ci ratio: 1.839540e-01	ci left: 2.015504e-02	ci right 2.428549e-02	k: 443	n:20000
NIPAL2   20000 perm   4 sec   (5625 perm/sec)   p_kst 2.215000e-02   p_cons 6.720000e-02   p_joint 2.055000e-02

Joint ci ratio: 1.287635e-01	ci left: 2.803403e-02	ci right 3.192436e-02	k: 898	n:30000
Cons ci ratio: 8.529901e-02	ci left: 6.295458e-02	ci right 6.859654e-02	k: 1972	n:30000
KS ci ratio: 1.536558e-01	ci left: 1.959977e-02	ci right 2.289386e-02	k: 636	n:30000
NIPAL2   30000 perm   6 sec   (5324 perm/sec)   p_kst 2.120000e-02   p_cons 6.573333e-02   p_joint 2.993333e-02

Joint ci ratio: 1.239344e-01	ci left: 2.288587e-02	ci right 2.593371e-02	k: 975	n:40000
Cons ci ratio: 7.461284e-02	ci left: 6.213650e-02	ci right 6.697695e-02	k: 2581	n:40000
KS ci ratio: 1.335801e-01	ci left: 1.966558e-02	ci right 2.250455e-02	k: 842	n:40000
NIPAL2   40000 perm   8 sec   (5064 perm/sec)   p_kst 2.105000e-02   p_cons 6.452500e-02   p_joint 2.437500e-02

Joint ci ratio: 1.688850e-01	ci left: 9.759185e-03	ci right 1.157830e-02	k: 532	n:50000
Cons ci ratio: 7.198987e-02	ci left: 5.396119e-02	ci right 5.801056e-02	k: 2798	n:50000
KS ci ratio: 1.204004e-01	ci left: 1.950873e-02	ci right 2.202734e-02	k: 1037	n:50000
NIPAL2   50000 perm   10 sec   (4926 perm/sec)   p_kst 2.074000e-02   p_cons 5.596000e-02   p_joint 1.064000e-02

Joint ci ratio: 1.096677e-01	ci left: 1.970539e-02	ci right 2.200794e-02	k: 1250	n:60000
Cons ci ratio: 6.584016e-02	ci left: 5.394374e-02	ci right 5.763271e-02	k: 3346	n:60000
KS ci ratio: 1.094000e-01	ci left: 1.980271e-02	ci right 2.211062e-02	k: 1256	n:60000
NIPAL2   60000 perm   12 sec   (4804 perm/sec)   p_kst 2.093333e-02   p_cons 5.576667e-02   p_joint 2.083333e-02

Joint ci ratio: 7.959917e-02	ci left: 3.215122e-02	ci right 3.483048e-02	k: 2343	n:70000
Cons ci ratio: 6.062666e-02	ci left: 5.464598e-02	ci right 5.807662e-02	k: 3944	n:70000
KS ci ratio: 1.019076e-01	ci left: 1.964410e-02	ci right 2.176732e-02	k: 1448	n:70000
NIPAL2   70000 perm   15 sec   (4690 perm/sec)   p_kst 2.068571e-02   p_cons 5.634286e-02   p_joint 3.347143e-02

Joint ci ratio: 7.293476e-02	ci left: 3.357749e-02	ci right 3.613139e-02	k: 2787	n:80000
Cons ci ratio: 5.698330e-02	ci left: 5.425631e-02	ci right 5.745100e-02	k: 4467	n:80000
KS ci ratio: 9.402957e-02	ci left: 2.026179e-02	ci right 2.227314e-02	k: 1700	n:80000
NIPAL2   80000 perm   17 sec   (4586 perm/sec)   p_kst 2.125000e-02   p_cons 5.583750e-02   p_joint 3.483750e-02

Outputting figure to mutsig2_images.part000000000114/NIPAL2.2_1155_80000_0.02125_0.055837_0.034838.png
                gene_name: NIPAL2
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.036 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000114
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 114 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1549>
Subject: Job 9894036: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1549>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000115> was used as the working directory.
Started at Sat Oct  6 00:21:16 2012
Results reported at Sat Oct  6 00:33:04 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000115.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000115.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 115  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000115.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    776.04 sec.
    Max Memory :      3615 MB
    Max Swap   :      5944 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
115
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 115
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 115: processing genes 10278 - 10367
Calculating significance of each gene.
Using projection method.
10278	NIPAL3	7.171071e-01
10279	NIPAL4	7.051318e-01
10280	NIPBL	2.010542e-01
In gene NIPSNAP1 the following bins exceed PROBCAP:
    COAD-AA-3852	categ 6	N = 724     n = 1	mu =   3.62e-07
10281	NIPSNAP1	2.059310e-01
10282	NIPSNAP3A	7.294157e-01
10283	NIPSNAP3B	4.014347e-01
10284	NISCH	9.999165e-01
10285	NIT1	4.244052e-01
10286	NIT2	1.433327e-01
10287	NKAIN1	1
10288	NKAIN2	4.381700e-01
10289	NKAIN3	3.011984e-01
10290	NKAIN4	1
10291	NKAP	8.560601e-01
10292	NKAPL	2.571127e-02
10293	NKD1	4.027877e-01
10294	NKD2	7.639494e-01
10295	NKG7	2.942779e-01
10296	NKIRAS1	6.254573e-01
10297	NKIRAS2	3.194788e-01
10298	NKPD1	1
10299	NKRF	7.901974e-01
10300	NKTR	8.106016e-01
10301	NKX2-1	1
10302	NKX2-2	3.351073e-01
10303	NKX2-3	1
10304	NKX2-4	1
10305	NKX2-5	7.410009e-01
10306	NKX2-8	1
10307	NKX3-1	1.061051e-01
10308	NKX3-2	7.655726e-01
10309	NKX6-1	4.423542e-01
10310	NKX6-2	1
10311	NKX6-3	1
10312	NLE1	3.964831e-01
10313	NLGN1	5.740069e-02
10314	NLGN2	8.348593e-01
10315	NLGN3	6.716995e-01
10316	NLGN4X	3.006244e-03
10317	NLGN4Y	8.813440e-01
10318	NLK	6.354190e-01
10319	NLN	8.344638e-01
10320	NLRC3	9.962996e-01
10321	NLRC4	3.160656e-01
10322	NLRC5	6.949464e-01
10323	NLRP1	5.797699e-02
10324	NLRP10	6.082263e-02
10325	NLRP11	1.446939e-01
10326	NLRP12	3.010956e-01
10327	NLRP13	2.621912e-02
10328	NLRP14	8.504708e-01
10329	NLRP2	8.197075e-01
10330	NLRP3	9.221768e-02
10331	NLRP4	1.384847e-03
10332	NLRP5	1.017842e-02
10333	NLRP6	9.895957e-01
10334	NLRP7	1.367860e-02
10335	NLRP8	2.048971e-03
10336	NLRP9	2.199178e-01
10337	NLRX1	9.705064e-01
10338	NMB	1
10339	NMBR	1
10340	NMD3	2.040766e-01
10341	NME1	1
10342	NME1-NME2	7.948496e-01
10343	NME2	1
10344	NME3	1
10345	NME4	1
10346	NME5	5.789012e-01
In gene NME6 the following bins exceed PROBCAP:
    COAD-AA-3560	categ 6	N = 609     n = 1	mu =   2.76e-07
10347	NME6	2.835276e-02
In gene NME7 the following bins exceed PROBCAP:
    READ-AG-3574	categ 6	N = 1179    n = 1	mu =   1.03e-07
10348	NME7	4.200587e-02
10349	NMI	4.394606e-01
10350	NMNAT1	3.369782e-01
10351	NMNAT2	5.570262e-01
10352	NMNAT3	2.796963e-01
10353	NMRAL1	4.573699e-01
10354	NMS	7.157997e-03
10355	NMT1	8.461802e-01
10356	NMT2	6.644284e-01
10357	NMU	1
10358	NMUR1	2.362858e-01
10359	NMUR2	7.768227e-04
10360	NNAT	1
10361	NNMT	3.249010e-01
10362	NNT	9.443456e-01
10363	NOB1	1
10364	NOBOX	1.670111e-01
10365	NOC2L	9.654137e-01
10366	NOC3L	2.000908e-02
10367	NOC4L	8.883355e-01
Done

Running MutSig 2:
Scatter job 115: processing genes 10278 - 10367
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NIPBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.414772e-02	ci left: 7.160328e-01	ci right 7.336360e-01	k: 7249	n:10000
Cons ci ratio: 2.765211e-02	ci left: 6.583700e-01	ci right 6.769322e-01	k: 6677	n:10000
KS ci ratio: 3.418922e-02	ci left: 5.581224e-01	ci right 5.776381e-01	k: 5679	n:10000
NIPBL   10000 perm   4 sec   (2458 perm/sec)   p_kst 5.679000e-01   p_cons 6.677000e-01   p_joint 7.249000e-01

Outputting figure to mutsig2_images.part000000000115/NIPBL.19_8644_10000_0.5679_0.6677_0.7249.png
                gene_name: NIPBL
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 2 percent done.
NLRP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.847959e-02	ci left: 2.382755e-01	ci right 2.552722e-01	k: 2467	n:10000
Cons ci ratio: 5.637744e-02	ci left: 3.166160e-01	ci right 3.350856e-01	k: 3258	n:10000
KS ci ratio: 9.739590e-02	ci left: 1.325692e-01	ci right 1.462416e-01	k: 1393	n:10000
NLRP4   10000 perm   2 sec   (4148 perm/sec)   p_kst 1.393000e-01   p_cons 3.258000e-01   p_joint 2.467000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP4.18_3021_10000_0.1393_0.3258_0.2467.png
                gene_name: NLRP4
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 4 percent done.
NLRP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.643801e-02	ci left: 5.265668e-01	ci right 5.462120e-01	k: 5364	n:10000
Cons ci ratio: 8.092922e-03	ci left: 9.551367e-01	ci right 9.629931e-01	k: 9592	n:10000
KS ci ratio: 6.005007e-02	ci left: 2.897392e-01	ci right 3.077782e-01	k: 2987	n:10000
NLRP3   10000 perm   2 sec   (4211 perm/sec)   p_kst 2.987000e-01   p_cons 9.592000e-01   p_joint 5.364000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP3.16_3147_10000_0.2987_0.9592_0.5364.png
                gene_name: NLRP3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 5 percent done.
NLRP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.788029e-02	ci left: 8.202549e-01	ci right 8.351537e-01	k: 8278	n:10000
Cons ci ratio: 1.909731e-02	ci left: 8.003440e-01	ci right 8.158761e-01	k: 8082	n:10000
KS ci ratio: 4.196429e-02	ci left: 4.560841e-01	ci right 4.757357e-01	k: 4659	n:10000
NLRP7   10000 perm   2 sec   (4475 perm/sec)   p_kst 4.659000e-01   p_cons 8.082000e-01   p_joint 8.278000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP7.16_3154_10000_0.4659_0.8082_0.8278.png
                gene_name: NLRP7
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 7 percent done.
NOC3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.313764e-01	ci left: 2.466595e-02	ci right 3.121293e-02	k: 278	n:10000
Cons ci ratio: 1.682928e-02	ci left: 8.371455e-01	ci right 8.514533e-01	k: 8444	n:10000
KS ci ratio: 4.509198e-01	ci left: 5.814929e-03	ci right 9.281233e-03	k: 74	n:10000
NOC3L   10000 perm   2 sec   (4108 perm/sec)   p_kst 7.400000e-03   p_cons 8.444000e-01   p_joint 2.780000e-02

Joint ci ratio: 1.689838e-01	ci left: 2.398245e-02	ci right 2.845673e-02	k: 523	n:20000
Cons ci ratio: 1.153508e-02	ci left: 8.474080e-01	ci right 8.572894e-01	k: 17048	n:20000
KS ci ratio: 3.495094e-01	ci left: 5.159405e-03	ci right 7.387804e-03	k: 124	n:20000
NOC3L   20000 perm   5 sec   (3674 perm/sec)   p_kst 6.200000e-03   p_cons 8.524000e-01   p_joint 2.615000e-02

Joint ci ratio: 1.788124e-01	ci left: 1.435554e-02	ci right 1.720602e-02	k: 472	n:30000
Cons ci ratio: 9.574798e-03	ci left: 8.440892e-01	ci right 8.522432e-01	k: 25446	n:30000
KS ci ratio: 2.954537e-01	ci left: 4.972185e-03	ci right 6.725594e-03	k: 174	n:30000
NOC3L   30000 perm   8 sec   (3550 perm/sec)   p_kst 5.800000e-03   p_cons 8.482000e-01   p_joint 1.573333e-02

Joint ci ratio: 1.849973e-01	ci left: 1.007253e-02	ci right 1.214936e-02	k: 443	n:40000
Cons ci ratio: 8.392310e-03	ci left: 8.414916e-01	ci right 8.486083e-01	k: 33803	n:40000
KS ci ratio: 2.571681e-01	ci left: 5.032596e-03	ci right 6.540513e-03	k: 230	n:40000
NOC3L   40000 perm   11 sec   (3503 perm/sec)   p_kst 5.750000e-03   p_cons 8.450750e-01   p_joint 1.107500e-02

Joint ci ratio: 1.386275e-01	ci left: 1.464788e-02	ci right 1.684887e-02	k: 786	n:50000
Cons ci ratio: 7.590219e-03	ci left: 8.389143e-01	ci right 8.453260e-01	k: 42107	n:50000
KS ci ratio: 2.327711e-01	ci left: 4.983585e-03	ci right 6.314797e-03	k: 281	n:50000
NOC3L   50000 perm   15 sec   (3423 perm/sec)   p_kst 5.620000e-03   p_cons 8.421400e-01   p_joint 1.572000e-02

Joint ci ratio: 1.347088e-01	ci left: 1.297845e-02	ci right 1.486900e-02	k: 834	n:60000
Cons ci ratio: 6.926867e-03	ci left: 8.392749e-01	ci right 8.451253e-01	k: 50533	n:60000
KS ci ratio: 2.165163e-01	ci left: 4.845061e-03	ci right 6.036878e-03	k: 325	n:60000
NOC3L   60000 perm   18 sec   (3349 perm/sec)   p_kst 5.416667e-03   p_cons 8.422167e-01   p_joint 1.390000e-02

Joint ci ratio: 1.272688e-01	ci left: 1.251979e-02	ci right 1.423518e-02	k: 935	n:70000
Cons ci ratio: 6.053752e-03	ci left: 8.543272e-01	ci right 8.595289e-01	k: 59986	n:70000
KS ci ratio: 2.008096e-01	ci left: 4.870542e-03	ci right 5.971067e-03	k: 378	n:70000
NOC3L   70000 perm   21 sec   (3311 perm/sec)   p_kst 5.400000e-03   p_cons 8.569429e-01   p_joint 1.335714e-02

Joint ci ratio: 1.051130e-01	ci left: 1.618857e-02	ci right 1.799670e-02	k: 1366	n:80000
Cons ci ratio: 5.678455e-03	ci left: 8.538123e-01	ci right 8.586868e-01	k: 68501	n:80000
KS ci ratio: 1.857273e-01	ci left: 5.023100e-03	ci right 6.063252e-03	k: 442	n:80000
NOC3L   80000 perm   24 sec   (3275 perm/sec)   p_kst 5.525000e-03   p_cons 8.562625e-01   p_joint 1.707500e-02

Joint ci ratio: 9.883630e-02	ci left: 1.632809e-02	ci right 1.803657e-02	k: 1545	n:90000
Cons ci ratio: 5.353357e-03	ci left: 8.539688e-01	ci right 8.585637e-01	k: 77065	n:90000
KS ci ratio: 1.732580e-01	ci left: 5.165428e-03	ci right 6.155732e-03	k: 508	n:90000
NOC3L   90000 perm   28 sec   (3243 perm/sec)   p_kst 5.644444e-03   p_cons 8.562778e-01   p_joint 1.716667e-02

Joint ci ratio: 1.049460e-01	ci left: 1.303737e-02	ci right 1.449104e-02	k: 1375	n:100000
Cons ci ratio: 5.090341e-03	ci left: 8.535168e-01	ci right 8.578825e-01	k: 85571	n:100000
KS ci ratio: 1.648891e-01	ci left: 5.156465e-03	ci right 6.092561e-03	k: 561	n:100000
NOC3L   100000 perm   31 sec   (3203 perm/sec)   p_kst 5.610000e-03   p_cons 8.557100e-01   p_joint 1.375000e-02

Joint ci ratio: 1.037971e-01	ci left: 1.213517e-02	ci right 1.347252e-02	k: 1407	n:110000
Cons ci ratio: 4.845419e-03	ci left: 8.540302e-01	ci right 8.581874e-01	k: 94173	n:110000
KS ci ratio: 1.566054e-01	ci left: 5.219957e-03	ci right 6.115500e-03	k: 622	n:110000
NOC3L   110000 perm   35 sec   (3158 perm/sec)   p_kst 5.654545e-03   p_cons 8.561182e-01   p_joint 1.279091e-02

Joint ci ratio: 9.685443e-02	ci left: 1.281400e-02	ci right 1.412634e-02	k: 1615	n:120000
Cons ci ratio: 4.640257e-03	ci left: 8.540595e-01	ci right 8.580400e-01	k: 102727	n:120000
KS ci ratio: 1.498980e-01	ci left: 5.241755e-03	ci right 6.099067e-03	k: 679	n:120000
NOC3L   120000 perm   38 sec   (3121 perm/sec)   p_kst 5.658333e-03   p_cons 8.560583e-01   p_joint 1.345833e-02

Joint ci ratio: 9.939507e-02	ci left: 1.123507e-02	ci right 1.241763e-02	k: 1536	n:130000
Cons ci ratio: 4.463300e-03	ci left: 8.538554e-01	ci right 8.576826e-01	k: 111251	n:130000
KS ci ratio: 1.438865e-01	ci left: 5.268308e-03	ci right 6.092439e-03	k: 737	n:130000
NOC3L   130000 perm   42 sec   (3071 perm/sec)   p_kst 5.669231e-03   p_cons 8.557769e-01   p_joint 1.181538e-02

Joint ci ratio: 9.869361e-02	ci left: 1.059260e-02	ci right 1.169921e-02	k: 1559	n:140000
Cons ci ratio: 4.300414e-03	ci left: 8.539561e-01	ci right 8.576434e-01	k: 119813	n:140000
KS ci ratio: 1.380225e-01	ci left: 5.333038e-03	ci right 6.130500e-03	k: 801	n:140000
NOC3L   140000 perm   46 sec   (3037 perm/sec)   p_kst 5.721429e-03   p_cons 8.558071e-01   p_joint 1.113571e-02

Joint ci ratio: 1.003018e-01	ci left: 9.574139e-03	ci right 1.059160e-02	k: 1511	n:150000
Cons ci ratio: 4.151008e-03	ci left: 8.542332e-01	ci right 8.577931e-01	k: 128403	n:150000
KS ci ratio: 1.331311e-01	ci left: 5.363942e-03	ci right 6.135351e-03	k: 861	n:150000
NOC3L   150000 perm   50 sec   (2995 perm/sec)   p_kst 5.740000e-03   p_cons 8.560200e-01   p_joint 1.007333e-02

Joint ci ratio: 9.556659e-02	ci left: 9.908672e-03	ci right 1.090919e-02	k: 1664	n:160000
Cons ci ratio: 4.019724e-03	ci left: 8.542576e-01	ci right 8.577045e-01	k: 136958	n:160000
KS ci ratio: 1.291488e-01	ci left: 5.355123e-03	ci right 6.100460e-03	k: 915	n:160000
NOC3L   160000 perm   54 sec   (2960 perm/sec)   p_kst 5.718750e-03   p_cons 8.559875e-01   p_joint 1.040000e-02

Joint ci ratio: 8.293648e-02	ci left: 1.243234e-02	ci right 1.351377e-02	k: 2204	n:170000
Cons ci ratio: 3.900250e-03	ci left: 8.542748e-01	ci right 8.576190e-01	k: 145512	n:170000
KS ci ratio: 1.256340e-01	ci left: 5.336247e-03	ci right 6.057238e-03	k: 967	n:170000
NOC3L   170000 perm   58 sec   (2925 perm/sec)   p_kst 5.688235e-03   p_cons 8.559529e-01   p_joint 1.296471e-02

Joint ci ratio: 8.137496e-02	ci left: 1.220956e-02	ci right 1.325066e-02	k: 2290	n:180000
Cons ci ratio: 3.788270e-03	ci left: 8.544589e-01	ci right 8.577074e-01	k: 154096	n:180000
KS ci ratio: 1.222709e-01	ci left: 5.330486e-03	ci right 6.030023e-03	k: 1021	n:180000
NOC3L   180000 perm   62 sec   (2890 perm/sec)   p_kst 5.672222e-03   p_cons 8.560889e-01   p_joint 1.272222e-02

Joint ci ratio: 8.074514e-02	ci left: 1.175763e-02	ci right 1.275207e-02	k: 2327	n:190000
Cons ci ratio: 3.690449e-03	ci left: 8.542864e-01	ci right 8.574501e-01	k: 162616	n:190000
KS ci ratio: 1.179034e-01	ci left: 5.443044e-03	ci right 6.130061e-03	k: 1098	n:190000
NOC3L   190000 perm   67 sec   (2851 perm/sec)   p_kst 5.778947e-03   p_cons 8.558737e-01   p_joint 1.224737e-02

Joint ci ratio: 7.528339e-02	ci left: 1.287121e-02	ci right 1.388297e-02	k: 2674	n:200000
Cons ci ratio: 3.599171e-03	ci left: 8.541774e-01	ci right 8.572622e-01	k: 171145	n:200000
KS ci ratio: 1.154635e-01	ci left: 5.399026e-03	ci right 6.065423e-03	k: 1145	n:200000
NOC3L   200000 perm   71 sec   (2820 perm/sec)   p_kst 5.725000e-03   p_cons 8.557250e-01   p_joint 1.337000e-02

Joint ci ratio: 7.442495e-02	ci left: 1.255260e-02	ci right 1.352758e-02	k: 2737	n:210000
Cons ci ratio: 3.513395e-03	ci left: 8.541468e-01	ci right 8.571577e-01	k: 179688	n:210000
KS ci ratio: 1.126009e-01	ci left: 5.414871e-03	ci right 6.065553e-03	k: 1204	n:210000
NOC3L   210000 perm   75 sec   (2789 perm/sec)   p_kst 5.733333e-03   p_cons 8.556571e-01   p_joint 1.303333e-02

Joint ci ratio: 7.708450e-02	ci left: 1.117011e-02	ci right 1.207010e-02	k: 2555	n:220000
Cons ci ratio: 3.433663e-03	ci left: 8.541060e-01	ci right 8.570483e-01	k: 188228	n:220000
KS ci ratio: 1.098538e-01	ci left: 5.438303e-03	ci right 6.074825e-03	k: 1265	n:220000
NOC3L   220000 perm   80 sec   (2759 perm/sec)   p_kst 5.750000e-03   p_cons 8.555818e-01   p_joint 1.161364e-02

Joint ci ratio: 7.325865e-02	ci left: 1.184499e-02	ci right 1.274997e-02	k: 2827	n:230000
Cons ci ratio: 3.356522e-03	ci left: 8.542616e-01	ci right 8.571381e-01	k: 196812	n:230000
KS ci ratio: 1.074614e-01	ci left: 5.442947e-03	ci right 6.065260e-03	k: 1322	n:230000
NOC3L   230000 perm   84 sec   (2730 perm/sec)   p_kst 5.747826e-03   p_cons 8.557043e-01   p_joint 1.229130e-02

Joint ci ratio: 7.147086e-02	ci left: 1.193652e-02	ci right 1.282532e-02	k: 2970	n:240000
Cons ci ratio: 3.283634e-03	ci left: 8.544593e-01	ci right 8.572738e-01	k: 205409	n:240000
KS ci ratio: 1.049895e-01	ci left: 5.471688e-03	ci right 6.082008e-03	k: 1385	n:240000
NOC3L   240000 perm   89 sec   (2702 perm/sec)   p_kst 5.770833e-03   p_cons 8.558708e-01   p_joint 1.237500e-02

Joint ci ratio: 7.012778e-02	ci left: 1.191091e-02	ci right 1.278045e-02	k: 3085	n:250000
Cons ci ratio: 3.216962e-03	ci left: 8.545132e-01	ci right 8.572705e-01	k: 213974	n:250000
KS ci ratio: 1.031471e-01	ci left: 5.447611e-03	ci right 6.043936e-03	k: 1435	n:250000
NOC3L   250000 perm   94 sec   (2672 perm/sec)   p_kst 5.740000e-03   p_cons 8.558960e-01   p_joint 1.234000e-02

Joint ci ratio: 6.970027e-02	ci left: 1.160011e-02	ci right 1.244159e-02	k: 3124	n:260000
Cons ci ratio: 3.155767e-03	ci left: 8.544400e-01	ci right 8.571444e-01	k: 222507	n:260000
KS ci ratio: 1.015015e-01	ci left: 5.414225e-03	ci right 5.996876e-03	k: 1482	n:260000
NOC3L   260000 perm   99 sec   (2639 perm/sec)   p_kst 5.700000e-03   p_cons 8.557962e-01   p_joint 1.201538e-02

Joint ci ratio: 6.830360e-02	ci left: 1.164002e-02	ci right 1.246680e-02	k: 3253	n:270000
Cons ci ratio: 3.097192e-03	ci left: 8.544321e-01	ci right 8.570862e-01	k: 231056	n:270000
KS ci ratio: 9.954040e-02	ci left: 5.426725e-03	ci right 5.998778e-03	k: 1541	n:270000
NOC3L   270000 perm   104 sec   (2607 perm/sec)   p_kst 5.707407e-03   p_cons 8.557630e-01   p_joint 1.204815e-02

Outputting figure to mutsig2_images.part000000000115/NOC3L.15_2487_270000_0.0057074_0.85576_0.012048.png
                gene_name: NOC3L
               theta_stop: 0.100 
                    nperm: 270000 
                     p_ks: 0.0057 
        ci_ks_bounds_left: 0.0054 
       ci_ks_bounds_right: 0.0060 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.012 

Current progress: 9 percent done.
NLRP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.314164e-01	ci left: 7.630693e-02	ci right 8.713821e-02	k: 816	n:10000
Cons ci ratio: 3.497140e-03	ci left: 9.902747e-01	ci right 9.938297e-01	k: 9922	n:10000
KS ci ratio: 2.244374e-01	ci left: 2.627129e-02	ci right 3.300643e-02	k: 295	n:10000
NLRP5   10000 perm   3 sec   (3950 perm/sec)   p_kst 2.950000e-02   p_cons 9.922000e-01   p_joint 8.160000e-02

Joint ci ratio: 9.675099e-02	ci left: 7.216868e-02	ci right 7.955520e-02	k: 1516	n:20000
Cons ci ratio: 2.250424e-03	ci left: 9.922865e-01	ci right 9.945665e-01	k: 19870	n:20000
KS ci ratio: 1.608167e-01	ci left: 2.652586e-02	ci right 3.121245e-02	k: 576	n:20000
NLRP5   20000 perm   6 sec   (3603 perm/sec)   p_kst 2.880000e-02   p_cons 9.935000e-01   p_joint 7.580000e-02

Joint ci ratio: 8.302460e-02	ci left: 6.628788e-02	ci right 7.206256e-02	k: 2074	n:30000
Cons ci ratio: 1.997829e-03	ci left: 9.912450e-01	ci right 9.932579e-01	k: 29769	n:30000
KS ci ratio: 1.315815e-01	ci left: 2.683976e-02	ci right 3.065223e-02	k: 861	n:30000
NLRP5   30000 perm   9 sec   (3483 perm/sec)   p_kst 2.870000e-02   p_cons 9.923000e-01   p_joint 6.913333e-02

Joint ci ratio: 6.788282e-02	ci left: 7.433190e-02	ci right 7.957971e-02	k: 3077	n:40000
Cons ci ratio: 1.729267e-03	ci left: 9.913942e-01	ci right 9.931332e-01	k: 39692	n:40000
KS ci ratio: 1.131118e-01	ci left: 2.749885e-02	ci right 3.081998e-02	k: 1165	n:40000
NLRP5   40000 perm   12 sec   (3442 perm/sec)   p_kst 2.912500e-02   p_cons 9.923000e-01   p_joint 7.692500e-02

Joint ci ratio: 6.993542e-02	ci left: 5.704870e-02	ci right 6.120267e-02	k: 2955	n:50000
Cons ci ratio: 1.361952e-03	ci left: 9.933047e-01	ci right 9.946770e-01	k: 49701	n:50000
KS ci ratio: 1.011526e-01	ci left: 2.768309e-02	ci right 3.065191e-02	k: 1457	n:50000
NLRP5   50000 perm   15 sec   (3372 perm/sec)   p_kst 2.914000e-02   p_cons 9.940200e-01   p_joint 5.910000e-02

Joint ci ratio: 5.646643e-02	ci left: 7.224672e-02	ci right 7.646122e-02	k: 4460	n:60000
Cons ci ratio: 1.257119e-03	ci left: 9.932266e-01	ci right 9.944916e-01	k: 59633	n:60000
KS ci ratio: 9.309852e-02	ci left: 2.736226e-02	ci right 3.005025e-02	k: 1721	n:60000
NLRP5   60000 perm   18 sec   (3312 perm/sec)   p_kst 2.868333e-02   p_cons 9.938833e-01   p_joint 7.433333e-02

Outputting figure to mutsig2_images.part000000000115/NLRP5.13_3663_60000_0.028683_0.99388_0.074333.png
                gene_name: NLRP5
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.076 

Current progress: 11 percent done.
NLRP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.749028e-02	ci left: 8.265603e-01	ci right 8.412446e-01	k: 8340	n:10000
Cons ci ratio: 2.554502e-02	ci left: 6.928268e-01	ci right 7.108555e-01	k: 7019	n:10000
KS ci ratio: 6.545109e-02	ci left: 2.552813e-01	ci right 2.726564e-01	k: 2639	n:10000
NLRP8   10000 perm   3 sec   (3928 perm/sec)   p_kst 2.639000e-01   p_cons 7.019000e-01   p_joint 8.340000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP8.13_3187_10000_0.2639_0.7019_0.834.png
                gene_name: NLRP8
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 13 percent done.
NLRC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.568773e-02	ci left: 1.367812e-01	ci right 1.506270e-01	k: 1436	n:10000
Cons ci ratio: 5.767632e-03	ci left: 9.758897e-01	ci right 9.816267e-01	k: 9789	n:10000
KS ci ratio: 1.467453e-01	ci left: 6.169346e-02	ci right 7.156083e-02	k: 665	n:10000
NLRC4   10000 perm   2 sec   (4177 perm/sec)   p_kst 6.650000e-02   p_cons 9.789000e-01   p_joint 1.436000e-01

Joint ci ratio: 7.084650e-02	ci left: 1.280270e-01	ci right 1.374801e-01	k: 2654	n:20000
Cons ci ratio: 4.103349e-03	ci left: 9.764984e-01	ci right 9.805608e-01	k: 19572	n:20000
KS ci ratio: 1.041864e-01	ci left: 6.264611e-02	ci right 6.958069e-02	k: 1321	n:20000
NLRC4   20000 perm   5 sec   (3832 perm/sec)   p_kst 6.605000e-02   p_cons 9.786000e-01   p_joint 1.327000e-01

Joint ci ratio: 5.637387e-02	ci left: 1.348732e-01	ci right 1.427302e-01	k: 4163	n:30000
Cons ci ratio: 3.383617e-03	ci left: 9.764493e-01	ci right 9.797906e-01	k: 29345	n:30000
KS ci ratio: 8.334871e-02	ci left: 6.579756e-02	ci right 7.155298e-02	k: 2059	n:30000
NLRC4   30000 perm   8 sec   (3703 perm/sec)   p_kst 6.863333e-02   p_cons 9.781667e-01   p_joint 1.387667e-01

Outputting figure to mutsig2_images.part000000000115/NLRC4.12_3107_30000_0.068633_0.97817_0.13877.png
                gene_name: NLRC4
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 15 percent done.
NLRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.155970e-02	ci left: 2.795337e-01	ci right 2.973897e-01	k: 2884	n:10000
Cons ci ratio: 2.710561e-02	ci left: 6.672307e-01	ci right 6.856665e-01	k: 6765	n:10000
KS ci ratio: 7.338209e-02	ci left: 2.137878e-01	ci right 2.301745e-01	k: 2219	n:10000
NLRP1   10000 perm   3 sec   (3917 perm/sec)   p_kst 2.219000e-01   p_cons 6.765000e-01   p_joint 2.884000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP1.12_4565_10000_0.2219_0.6765_0.2884.png
                gene_name: NLRP1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 16 percent done.
NLRP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.211284e-02	ci left: 7.500881e-01	ci right 7.669611e-01	k: 7586	n:10000
Cons ci ratio: 1.401569e-02	ci left: 8.803248e-01	ci right 8.928490e-01	k: 8867	n:10000
KS ci ratio: 3.745367e-02	ci left: 5.128549e-01	ci right 5.325319e-01	k: 5227	n:10000
NLRP12   10000 perm   2 sec   (4590 perm/sec)   p_kst 5.227000e-01   p_cons 8.867000e-01   p_joint 7.586000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP12.12_3322_10000_0.5227_0.8867_0.7586.png
                gene_name: NLRP12
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 18 percent done.
NLRP13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.412073e-02	ci left: 3.346859e-01	ci right 3.534050e-01	k: 3440	n:10000
Cons ci ratio: 1.257135e-02	ci left: 9.009330e-01	ci right 9.124288e-01	k: 9068	n:10000
KS ci ratio: 8.096203e-02	ci left: 1.821553e-01	ci right 1.976258e-01	k: 1898	n:10000
NLRP13   10000 perm   2 sec   (4227 perm/sec)   p_kst 1.898000e-01   p_cons 9.068000e-01   p_joint 3.440000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP13.11_3176_10000_0.1898_0.9068_0.344.png
                gene_name: NLRP13
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 20 percent done.
NLGN4X
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.942915e-02	ci left: 7.948639e-01	ci right 8.105594e-01	k: 8028	n:10000
Cons ci ratio: 2.195589e-02	ci left: 7.527183e-01	ci right 7.695293e-01	k: 7612	n:10000
KS ci ratio: 3.146594e-02	ci left: 5.984516e-01	ci right 6.176854e-01	k: 6081	n:10000
NLGN4X   10000 perm   2 sec   (4536 perm/sec)   p_kst 6.081000e-01   p_cons 7.612000e-01   p_joint 8.028000e-01

Outputting figure to mutsig2_images.part000000000115/NLGN4X.10_2471_10000_0.6081_0.7612_0.8028.png
                gene_name: NLGN4X
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 22 percent done.
NLRC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.102080e-01	ci left: 1.060777e-01	ci right 1.185492e-01	k: 1122	n:10000
Cons ci ratio: 2.801592e-01	ci left: 1.650803e-02	ci right 2.197711e-02	k: 191	n:10000
KS ci ratio: 1.166602e-02	ci left: 9.131707e-01	ci right 9.239840e-01	k: 9187	n:10000
NLRC5   10000 perm   3 sec   (3307 perm/sec)   p_kst 9.187000e-01   p_cons 1.910000e-02   p_joint 1.122000e-01

Joint ci ratio: 6.553325e-02	ci left: 1.467542e-01	ci right 1.567472e-01	k: 3034	n:20000
Cons ci ratio: 1.942734e-01	ci left: 1.800953e-02	ci right 2.193178e-02	k: 398	n:20000
KS ci ratio: 8.055540e-03	ci left: 9.183500e-01	ci right 9.258268e-01	k: 18443	n:20000
NLRC5   20000 perm   6 sec   (3077 perm/sec)   p_kst 9.221500e-01   p_cons 1.990000e-02   p_joint 1.517000e-01

Joint ci ratio: 6.031099e-02	ci left: 1.196982e-01	ci right 1.271749e-01	k: 3702	n:30000
Cons ci ratio: 1.640943e-01	ci left: 1.713322e-02	ci right 2.022766e-02	k: 559	n:30000
KS ci ratio: 6.569970e-03	ci left: 9.192130e-01	ci right 9.253049e-01	k: 27669	n:30000
NLRC5   30000 perm   10 sec   (3027 perm/sec)   p_kst 9.223000e-01   p_cons 1.863333e-02   p_joint 1.234000e-01

Joint ci ratio: 5.814745e-02	ci left: 9.905057e-02	ci right 1.050073e-01	k: 4080	n:40000
Cons ci ratio: 1.384395e-01	ci left: 1.828815e-02	ci right 2.103221e-02	k: 785	n:40000
KS ci ratio: 5.710362e-03	ci left: 9.191003e-01	ci right 9.243883e-01	k: 36871	n:40000
NLRC5   40000 perm   14 sec   (2955 perm/sec)   p_kst 9.217750e-01   p_cons 1.962500e-02   p_joint 1.020000e-01

Joint ci ratio: 5.398234e-02	ci left: 9.281885e-02	ci right 9.798823e-02	k: 4769	n:50000
Cons ci ratio: 1.246356e-01	ci left: 1.818962e-02	ci right 2.062663e-02	k: 969	n:50000
KS ci ratio: 5.334657e-03	ci left: 9.127848e-01	ci right 9.176869e-01	k: 45763	n:50000
NLRC5   50000 perm   17 sec   (2919 perm/sec)   p_kst 9.152600e-01   p_cons 1.938000e-02   p_joint 9.538000e-02

Joint ci ratio: 5.359284e-02	ci left: 7.966842e-02	ci right 8.407212e-02	k: 4911	n:60000
Cons ci ratio: 1.130359e-01	ci left: 1.853818e-02	ci right 2.077529e-02	k: 1178	n:60000
KS ci ratio: 4.880037e-03	ci left: 9.126726e-01	ci right 9.171538e-01	k: 54896	n:60000
NLRC5   60000 perm   21 sec   (2886 perm/sec)   p_kst 9.149333e-01   p_cons 1.963333e-02   p_joint 8.185000e-02

Joint ci ratio: 4.712049e-02	ci left: 8.784746e-02	ci right 9.210089e-02	k: 6297	n:70000
Cons ci ratio: 1.038642e-01	ci left: 1.890606e-02	ci right 2.099114e-02	k: 1395	n:70000
KS ci ratio: 3.644946e-03	ci left: 9.411990e-01	ci right 9.446499e-01	k: 66006	n:70000
NLRC5   70000 perm   24 sec   (2860 perm/sec)   p_kst 9.429429e-01   p_cons 1.992857e-02   p_joint 8.995714e-02

Joint ci ratio: 4.548254e-02	ci left: 8.302682e-02	ci right 8.690334e-02	k: 6796	n:80000
Cons ci ratio: 9.695265e-02	ci left: 1.905326e-02	ci right 2.100677e-02	k: 1601	n:80000
KS ci ratio: 3.392604e-03	ci left: 9.418523e-01	ci right 9.450654e-01	k: 75478	n:80000
NLRC5   80000 perm   28 sec   (2822 perm/sec)   p_kst 9.434750e-01   p_cons 2.001250e-02   p_joint 8.495000e-02

Outputting figure to mutsig2_images.part000000000115/NLRC5.9_5789_80000_0.94347_0.020012_0.08495.png
                gene_name: NLRC5
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.087 

Current progress: 24 percent done.
NLRP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.160559e-02	ci left: 7.585873e-01	ci right 7.752569e-01	k: 7670	n:10000
Cons ci ratio: 1.079305e-02	ci left: 9.244098e-01	ci right 9.345383e-01	k: 9296	n:10000
KS ci ratio: 3.371796e-02	ci left: 5.649396e-01	ci right 5.844169e-01	k: 5747	n:10000
NLRP11   10000 perm   2 sec   (4133 perm/sec)   p_kst 5.747000e-01   p_cons 9.296000e-01   p_joint 7.670000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP11.9_3138_10000_0.5747_0.9296_0.767.png
                gene_name: NLRP11
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 25 percent done.
NMUR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.487317e-02	ci left: 8.675412e-01	ci right 8.806401e-01	k: 8742	n:10000
KS ci ratio: 1.014468e-02	ci left: 9.323699e-01	ci right 9.419735e-01	k: 9373	n:10000
NMUR2   10000 perm   2 sec   (5294 perm/sec)   p_kst 9.373000e-01   p_cons 8.742000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NMUR2.9_1264_10000_0.9373_0.8742_1.png
                gene_name: NMUR2
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
NKAPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.617783e-02	ci left: 8.474359e-01	ci right 8.613569e-01	k: 8545	n:10000
Cons ci ratio: 3.432174e-02	ci left: 5.562179e-01	ci right 5.757437e-01	k: 5660	n:10000
KS ci ratio: 2.457788e-02	ci left: 7.088662e-01	ci right 7.266068e-01	k: 7178	n:10000
NKAPL   10000 perm   2 sec   (6116 perm/sec)   p_kst 7.178000e-01   p_cons 5.660000e-01   p_joint 8.545000e-01

Outputting figure to mutsig2_images.part000000000115/NKAPL.8_1213_10000_0.7178_0.566_0.8545.png
                gene_name: NKAPL
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 29 percent done.
NLRP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.502814e-01	ci left: 5.889456e-02	ci right 6.856151e-02	k: 636	n:10000
Cons ci ratio: 4.727859e-02	ci left: 3.976482e-01	ci right 4.170058e-01	k: 4073	n:10000
KS ci ratio: 2.403906e-01	ci left: 2.278143e-02	ci right 2.909884e-02	k: 258	n:10000
NLRP9   10000 perm   2 sec   (4759 perm/sec)   p_kst 2.580000e-02   p_cons 4.073000e-01   p_joint 6.360000e-02

Joint ci ratio: 1.097596e-01	ci left: 5.665039e-02	ci right 6.327826e-02	k: 1198	n:20000
Cons ci ratio: 3.275810e-02	ci left: 4.103536e-01	ci right 4.240705e-01	k: 8344	n:20000
KS ci ratio: 1.656068e-01	ci left: 2.498955e-02	ci right 2.954929e-02	k: 544	n:20000
NLRP9   20000 perm   5 sec   (4089 perm/sec)   p_kst 2.720000e-02   p_cons 4.172000e-01   p_joint 5.990000e-02

Joint ci ratio: 1.116503e-01	ci left: 3.725903e-02	ci right 4.169739e-02	k: 1183	n:30000
Cons ci ratio: 2.689675e-02	ci left: 4.089172e-01	ci right 4.200993e-01	k: 12435	n:30000
KS ci ratio: 1.376166e-01	ci left: 2.451849e-02	ci right 2.817402e-02	k: 789	n:30000
NLRP9   30000 perm   8 sec   (3988 perm/sec)   p_kst 2.630000e-02   p_cons 4.145000e-01   p_joint 3.943333e-02

Joint ci ratio: 9.580081e-02	ci left: 3.824713e-02	ci right 4.211998e-02	k: 1606	n:40000
Cons ci ratio: 2.328763e-02	ci left: 4.097909e-01	ci right 4.194715e-01	k: 16585	n:40000
KS ci ratio: 1.181661e-01	ci left: 2.519071e-02	ci right 2.837849e-02	k: 1070	n:40000
NLRP9   40000 perm   10 sec   (3858 perm/sec)   p_kst 2.675000e-02   p_cons 4.146250e-01   p_joint 4.015000e-02

Joint ci ratio: 8.157895e-02	ci left: 4.233647e-02	ci right 4.595669e-02	k: 2206	n:50000
Cons ci ratio: 2.175522e-02	ci left: 3.893939e-01	ci right 3.979785e-01	k: 19684	n:50000
KS ci ratio: 1.046418e-01	ci left: 2.586966e-02	ci right 2.874558e-02	k: 1364	n:50000
NLRP9   50000 perm   13 sec   (3736 perm/sec)   p_kst 2.728000e-02   p_cons 3.936800e-01   p_joint 4.412000e-02

Joint ci ratio: 7.703856e-02	ci left: 3.977080e-02	ci right 4.297376e-02	k: 2481	n:60000
Cons ci ratio: 1.987010e-02	ci left: 3.895214e-01	ci right 3.973556e-01	k: 23606	n:60000
KS ci ratio: 9.493042e-02	ci left: 2.632000e-02	ci right 2.895929e-02	k: 1657	n:60000
NLRP9   60000 perm   17 sec   (3632 perm/sec)   p_kst 2.761667e-02   p_cons 3.934333e-01   p_joint 4.135000e-02

Outputting figure to mutsig2_images.part000000000115/NLRP9.8_3012_60000_0.027617_0.39343_0.04135.png
                gene_name: NLRP9
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.043 

Current progress: 31 percent done.
NLGN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.056855e-03	ci left: 9.449215e-01	ci right 9.536144e-01	k: 9494	n:10000
Cons ci ratio: 3.476387e-02	ci left: 5.499041e-01	ci right 5.694611e-01	k: 5597	n:10000
KS ci ratio: 1.208232e-02	ci left: 9.076136e-01	ci right 9.187443e-01	k: 9133	n:10000
NLGN1   10000 perm   2 sec   (4758 perm/sec)   p_kst 9.133000e-01   p_cons 5.597000e-01   p_joint 9.494000e-01

Outputting figure to mutsig2_images.part000000000115/NLGN1.7_2492_10000_0.9133_0.5597_0.9494.png
                gene_name: NLGN1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 33 percent done.
NLRP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.902580e-02	ci left: 3.803239e-01	ci right 3.995402e-01	k: 3899	n:10000
Cons ci ratio: 3.113690e-02	ci left: 6.034724e-01	ci right 6.226617e-01	k: 6131	n:10000
KS ci ratio: 1.065035e-01	ci left: 1.129108e-01	ci right 1.257119e-01	k: 1192	n:10000
NLRP10   10000 perm   2 sec   (5514 perm/sec)   p_kst 1.192000e-01   p_cons 6.131000e-01   p_joint 3.899000e-01

Joint ci ratio: 5.048126e-02	ci left: 2.257678e-01	ci right 2.375103e-01	k: 4632	n:20000
Cons ci ratio: 2.090996e-02	ci left: 6.305923e-01	ci right 6.439678e-01	k: 12746	n:20000
KS ci ratio: 7.670452e-02	ci left: 1.110523e-01	ci right 1.199599e-01	k: 2309	n:20000
NLRP10   20000 perm   4 sec   (4717 perm/sec)   p_kst 1.154500e-01   p_cons 6.373000e-01   p_joint 2.316000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP10.7_1976_20000_0.11545_0.6373_0.2316.png
                gene_name: NLRP10
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 35 percent done.
NLRP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.464415e-02	ci left: 5.516076e-01	ci right 5.711566e-01	k: 5614	n:10000
Cons ci ratio: 2.652540e-02	ci left: 6.766995e-01	ci right 6.949921e-01	k: 6859	n:10000
KS ci ratio: 4.427870e-02	ci left: 4.295415e-01	ci right 4.490938e-01	k: 4393	n:10000
NLRP14   10000 perm   2 sec   (4439 perm/sec)   p_kst 4.393000e-01   p_cons 6.859000e-01   p_joint 5.614000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP14.7_3326_10000_0.4393_0.6859_0.5614.png
                gene_name: NLRP14
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 36 percent done.
NKTR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.309272e-02	ci left: 1.435445e-01	ci right 1.576597e-01	k: 1505	n:10000
Cons ci ratio: 1.757246e-01	ci left: 4.322176e-02	ci right 5.164440e-02	k: 473	n:10000
KS ci ratio: 1.051037e-02	ci left: 9.279223e-01	ci right 9.378237e-01	k: 9330	n:10000
NKTR   10000 perm   2 sec   (4244 perm/sec)   p_kst 9.330000e-01   p_cons 4.730000e-02   p_joint 1.505000e-01

Joint ci ratio: 5.144298e-02	ci left: 2.191785e-01	ci right 2.308016e-01	k: 4499	n:20000
Cons ci ratio: 1.201886e-01	ci left: 4.745718e-02	ci right 5.357434e-02	k: 1009	n:20000
KS ci ratio: 7.409135e-03	ci left: 9.298049e-01	ci right 9.367685e-01	k: 18667	n:20000
NKTR   20000 perm   5 sec   (3791 perm/sec)   p_kst 9.333500e-01   p_cons 5.045000e-02   p_joint 2.249500e-01

Joint ci ratio: 3.435825e-02	ci left: 2.973712e-01	ci right 3.078004e-01	k: 9077	n:30000
Cons ci ratio: 9.547558e-02	ci left: 5.065448e-02	ci right 5.576582e-02	k: 1595	n:30000
KS ci ratio: 6.036825e-03	ci left: 9.307237e-01	ci right 9.363920e-01	k: 28008	n:30000
NKTR   30000 perm   8 sec   (3569 perm/sec)   p_kst 9.336000e-01   p_cons 5.316667e-02   p_joint 3.025667e-01

Outputting figure to mutsig2_images.part000000000115/NKTR.5_4453_30000_0.9336_0.053167_0.30257.png
                gene_name: NKTR
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 38 percent done.
NMD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.618985e-02	ci left: 2.012637e-01	ci right 2.173060e-01	k: 2092	n:10000
Cons ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
KS ci ratio: 5.836740e-03	ci left: 9.753575e-01	ci right 9.811593e-01	k: 9784	n:10000
NMD3   10000 perm   2 sec   (5824 perm/sec)   p_kst 9.784000e-01   p_cons 3.560000e-02   p_joint 2.092000e-01

Joint ci ratio: 4.953562e-02	ci left: 2.325080e-01	ci right 2.443682e-01	k: 4768	n:20000
Cons ci ratio: 1.433295e-01	ci left: 3.346084e-02	ci right 3.867516e-02	k: 720	n:20000
KS ci ratio: 4.294775e-03	ci left: 9.744093e-01	ci right 9.786506e-01	k: 19532	n:20000
NMD3   20000 perm   4 sec   (5245 perm/sec)   p_kst 9.766000e-01   p_cons 3.600000e-02   p_joint 2.384000e-01

Joint ci ratio: 4.661302e-02	ci left: 1.863010e-01	ci right 1.952256e-01	k: 5722	n:30000
Cons ci ratio: 1.183117e-01	ci left: 3.320786e-02	ci right 3.741609e-02	k: 1058	n:30000
KS ci ratio: 3.566338e-03	ci left: 9.739977e-01	ci right 9.775094e-01	k: 29274	n:30000
NMD3   30000 perm   6 sec   (4992 perm/sec)   p_kst 9.758000e-01   p_cons 3.526667e-02   p_joint 1.907333e-01

Joint ci ratio: 3.978182e-02	ci left: 1.914248e-01	ci right 1.992195e-01	k: 7812	n:40000
Cons ci ratio: 1.062229e-01	ci left: 3.117343e-02	ci right 3.469480e-02	k: 1316	n:40000
KS ci ratio: 3.105976e-03	ci left: 9.739633e-01	ci right 9.770172e-01	k: 39021	n:40000
NMD3   40000 perm   8 sec   (4832 perm/sec)   p_kst 9.755250e-01   p_cons 3.290000e-02   p_joint 1.953000e-01

Joint ci ratio: 3.866189e-02	ci left: 1.672327e-01	ci right 1.738456e-01	k: 8526	n:50000
Cons ci ratio: 9.089960e-02	ci left: 3.422762e-02	ci right 3.750655e-02	k: 1792	n:50000
KS ci ratio: 2.753596e-03	ci left: 9.745589e-01	ci right 9.772655e-01	k: 48797	n:50000
NMD3   50000 perm   11 sec   (4688 perm/sec)   p_kst 9.759400e-01   p_cons 3.584000e-02   p_joint 1.705200e-01

Outputting figure to mutsig2_images.part000000000115/NMD3.5_1572_50000_0.97594_0.03584_0.17052.png
                gene_name: NMD3
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 40 percent done.
NME7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.572163e-02	ci left: 2.536986e-01	ci right 2.710400e-01	k: 2623	n:10000
Cons ci ratio: 6.652915e-02	ci left: 2.490504e-01	ci right 2.662910e-01	k: 2576	n:10000
KS ci ratio: 7.494614e-02	ci left: 2.066861e-01	ci right 2.228804e-01	k: 2147	n:10000
NME7   10000 perm   2 sec   (5671 perm/sec)   p_kst 2.147000e-01   p_cons 2.576000e-01   p_joint 2.623000e-01

Outputting figure to mutsig2_images.part000000000115/NME7.5_1179_10000_0.2147_0.2576_0.2623.png
                gene_name: NME7
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 42 percent done.
NOBOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.707555e-02	ci left: 1.975185e-01	ci right 2.134534e-01	k: 2054	n:10000
Cons ci ratio: 2.629793e-02	ci left: 6.804278e-01	ci right 6.986616e-01	k: 6896	n:10000
KS ci ratio: 1.175954e-01	ci left: 9.408985e-02	ci right 1.059443e-01	k: 999	n:10000
NOBOX   10000 perm   2 sec   (5457 perm/sec)   p_kst 9.990000e-02   p_cons 6.896000e-01   p_joint 2.054000e-01

Joint ci ratio: 5.551456e-02	ci left: 1.939806e-01	ci right 2.051069e-01	k: 3990	n:20000
Cons ci ratio: 1.820824e-02	ci left: 6.921367e-01	ci right 7.049055e-01	k: 13971	n:20000
KS ci ratio: 8.299286e-02	ci left: 9.617007e-02	ci right 1.045465e-01	k: 2006	n:20000
NOBOX   20000 perm   4 sec   (4923 perm/sec)   p_kst 1.003000e-01   p_cons 6.985500e-01   p_joint 1.995000e-01

Outputting figure to mutsig2_images.part000000000115/NOBOX.5_1757_20000_0.1003_0.69855_0.1995.png
                gene_name: NOBOX
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 44 percent done.
NLE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.000985e-02	ci left: 4.798565e-01	ci right 4.995495e-01	k: 4897	n:10000
Cons ci ratio: 9.627528e-02	ci left: 1.353117e-01	ci right 1.490975e-01	k: 1421	n:10000
KS ci ratio: 2.934637e-02	ci left: 6.313068e-01	ci right 6.502111e-01	k: 6408	n:10000
NLE1   10000 perm   2 sec   (5987 perm/sec)   p_kst 6.408000e-01   p_cons 1.421000e-01   p_joint 4.897000e-01

Outputting figure to mutsig2_images.part000000000115/NLE1.4_1510_10000_0.6408_0.1421_0.4897.png
                gene_name: NLE1
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 45 percent done.
NLGN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.414772e-02	ci left: 7.160328e-01	ci right 7.336360e-01	k: 7249	n:10000
Cons ci ratio: 6.749929e-02	ci left: 2.436126e-01	ci right 2.607320e-01	k: 2521	n:10000
KS ci ratio: 2.333176e-02	ci left: 7.296672e-01	ci right 7.469937e-01	k: 7384	n:10000
NLGN3   10000 perm   2 sec   (5073 perm/sec)   p_kst 7.384000e-01   p_cons 2.521000e-01   p_joint 7.249000e-01

Outputting figure to mutsig2_images.part000000000115/NLGN3.4_2575_10000_0.7384_0.2521_0.7249.png
                gene_name: NLGN3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 47 percent done.
NLRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.501136e-02	ci left: 5.463971e-01	ci right 5.659702e-01	k: 5562	n:10000
Cons ci ratio: 4.193901e-02	ci left: 4.563836e-01	ci right 4.760361e-01	k: 4662	n:10000
KS ci ratio: 4.683115e-02	ci left: 4.022303e-01	ci right 4.216210e-01	k: 4119	n:10000
NLRP2   10000 perm   2 sec   (5040 perm/sec)   p_kst 4.119000e-01   p_cons 4.662000e-01   p_joint 5.562000e-01

Outputting figure to mutsig2_images.part000000000115/NLRP2.4_3237_10000_0.4119_0.4662_0.5562.png
                gene_name: NLRP2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 49 percent done.
NME6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.755381e-02	ci left: 3.948596e-01	ci right 4.141961e-01	k: 4045	n:10000
Cons ci ratio: 7.771862e-02	ci left: 1.948582e-01	ci right 2.107153e-01	k: 2027	n:10000
KS ci ratio: 2.977477e-02	ci left: 6.245712e-01	ci right 6.435506e-01	k: 6341	n:10000
NME6   10000 perm   2 sec   (5940 perm/sec)   p_kst 6.341000e-01   p_cons 2.027000e-01   p_joint 4.045000e-01

Outputting figure to mutsig2_images.part000000000115/NME6.4_609_10000_0.6341_0.2027_0.4045.png
                gene_name: NME6
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 51 percent done.
NMS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.095346e-02	ci left: 6.062845e-01	ci right 6.254480e-01	k: 6159	n:10000
Cons ci ratio: 1.358687e-02	ci left: 8.865717e-01	ci right 8.987985e-01	k: 8928	n:10000
KS ci ratio: 4.215870e-02	ci left: 4.537880e-01	ci right 4.734332e-01	k: 4636	n:10000
NMS   10000 perm   2 sec   (6061 perm/sec)   p_kst 4.636000e-01   p_cons 8.928000e-01   p_joint 6.159000e-01

Outputting figure to mutsig2_images.part000000000115/NMS.4_502_10000_0.4636_0.8928_0.6159.png
                gene_name: NMS
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 53 percent done.
NMUR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.165769e-02	ci left: 5.955400e-01	ci right 6.147987e-01	k: 6052	n:10000
Cons ci ratio: 4.444821e-03	ci left: 9.850162e-01	ci right 9.894933e-01	k: 9874	n:10000
KS ci ratio: 5.851007e-02	ci left: 3.006442e-01	ci right 3.188667e-01	k: 3097	n:10000
NMUR1   10000 perm   2 sec   (5587 perm/sec)   p_kst 3.097000e-01   p_cons 9.874000e-01   p_joint 6.052000e-01

Outputting figure to mutsig2_images.part000000000115/NMUR1.4_1293_10000_0.3097_0.9874_0.6052.png
                gene_name: NMUR1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 55 percent done.
NIPAL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.851016e-02	ci left: 6.445828e-01	ci right 6.633275e-01	k: 6540	n:10000
KS ci ratio: 1.832371e-02	ci left: 8.130385e-01	ci right 8.281743e-01	k: 8207	n:10000
NIPAL3   10000 perm   2 sec   (5663 perm/sec)   p_kst 8.207000e-01   p_cons 6.540000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NIPAL3.3_1265_10000_0.8207_0.654_1.png
                gene_name: NIPAL3
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
NIT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.491770e-02	ci left: 1.387411e-01	ci right 1.526660e-01	k: 1456	n:10000
Cons ci ratio: 2.380421e-01	ci left: 2.325212e-02	ci right 2.962780e-02	k: 263	n:10000
KS ci ratio: 5.406084e-02	ci left: 3.351826e-01	ci right 3.539081e-01	k: 3445	n:10000
NIT2   10000 perm   2 sec   (6025 perm/sec)   p_kst 3.445000e-01   p_cons 2.630000e-02   p_joint 1.456000e-01

Joint ci ratio: 5.824552e-02	ci left: 1.792442e-01	ci right 1.900476e-01	k: 3692	n:20000
Cons ci ratio: 1.556167e-01	ci left: 2.835269e-02	ci right 3.318501e-02	k: 614	n:20000
KS ci ratio: 3.834551e-02	ci left: 3.365685e-01	ci right 3.497772e-01	k: 6863	n:20000
NIT2   20000 perm   4 sec   (5360 perm/sec)   p_kst 3.431500e-01   p_cons 3.070000e-02   p_joint 1.846000e-01

Joint ci ratio: 5.806078e-02	ci left: 1.280571e-01	ci right 1.357477e-01	k: 3956	n:30000
Cons ci ratio: 1.269551e-01	ci left: 2.884147e-02	ci right 3.278342e-02	k: 923	n:30000
KS ci ratio: 3.136228e-02	ci left: 3.370293e-01	ci right 3.478012e-01	k: 10272	n:30000
NIT2   30000 perm   6 sec   (5166 perm/sec)   p_kst 3.424000e-01   p_cons 3.076667e-02   p_joint 1.318667e-01

Joint ci ratio: 4.927573e-02	ci left: 1.332237e-01	ci right 1.399791e-01	k: 5463	n:40000
Cons ci ratio: 1.101313e-01	ci left: 2.900680e-02	ci right 3.241178e-02	k: 1227	n:40000
KS ci ratio: 2.673970e-02	ci left: 3.448010e-01	ci right 3.541709e-01	k: 13979	n:40000
NIT2   40000 perm   8 sec   (4965 perm/sec)   p_kst 3.494750e-01   p_cons 3.067500e-02   p_joint 1.365750e-01

Joint ci ratio: 4.402138e-02	ci left: 1.338585e-01	ci right 1.399037e-01	k: 6843	n:50000
Cons ci ratio: 9.877054e-02	ci left: 2.902957e-02	ci right 3.206526e-02	k: 1526	n:50000
KS ci ratio: 2.395357e-02	ci left: 3.446015e-01	ci right 3.529761e-01	k: 17439	n:50000
NIT2   50000 perm   11 sec   (4747 perm/sec)   p_kst 3.487800e-01   p_cons 3.052000e-02   p_joint 1.368600e-01

Outputting figure to mutsig2_images.part000000000115/NIT2.3_871_50000_0.34878_0.03052_0.13686.png
                gene_name: NIT2
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 58 percent done.
NKD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.237119e-02	ci left: 4.512924e-01	ci right 4.709303e-01	k: 4611	n:10000
KS ci ratio: 2.422036e-02	ci left: 7.148214e-01	ci right 7.324482e-01	k: 7237	n:10000
NKD1   10000 perm   2 sec   (5373 perm/sec)   p_kst 7.237000e-01   p_cons 4.611000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NKD1.3_1453_10000_0.7237_0.4611_1.png
                gene_name: NKD1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
NKX3-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.167954e-02	ci left: 1.794983e-01	ci right 1.948844e-01	k: 1871	n:10000
Cons ci ratio: 8.307477e-02	ci left: 1.744810e-01	ci right 1.897046e-01	k: 1820	n:10000
KS ci ratio: 5.814273e-02	ci left: 3.033218e-01	ci right 3.215876e-01	k: 3124	n:10000
NKX3-1   10000 perm   2 sec   (5876 perm/sec)   p_kst 3.124000e-01   p_cons 1.820000e-01   p_joint 1.871000e-01

Outputting figure to mutsig2_images.part000000000115/NKX3-1.3_713_10000_0.3124_0.182_0.1871.png
                gene_name: NKX3-1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 62 percent done.
NLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.236221e-02	ci left: 9.038097e-01	ci right 9.151504e-01	k: 9096	n:10000
Cons ci ratio: 2.186533e-02	ci left: 7.542360e-01	ci right 7.710108e-01	k: 7627	n:10000
KS ci ratio: 1.784894e-02	ci left: 8.207633e-01	ci right 8.356450e-01	k: 8283	n:10000
NLN   10000 perm   2 sec   (5314 perm/sec)   p_kst 8.283000e-01   p_cons 7.627000e-01   p_joint 9.096000e-01

Outputting figure to mutsig2_images.part000000000115/NLN.3_2167_10000_0.8283_0.7627_0.9096.png
                gene_name: NLN
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 64 percent done.
NMT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.344429e-02	ci left: 3.403483e-01	ci right 3.591393e-01	k: 3497	n:10000
Cons ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
KS ci ratio: 3.287702e-02	ci left: 5.772755e-01	ci right 5.966738e-01	k: 5870	n:10000
NMT2   10000 perm   2 sec   (5793 perm/sec)   p_kst 5.870000e-01   p_cons 7.270000e-02   p_joint 3.497000e-01

Joint ci ratio: 4.477024e-02	ci left: 2.708553e-01	ci right 2.833096e-01	k: 5541	n:20000
Cons ci ratio: 9.996020e-02	ci left: 6.782007e-02	ci right 7.500514e-02	k: 1427	n:20000
KS ci ratio: 2.363697e-02	ci left: 5.720713e-01	ci right 5.858057e-01	k: 11579	n:20000
NMT2   20000 perm   4 sec   (5221 perm/sec)   p_kst 5.789500e-01   p_cons 7.135000e-02   p_joint 2.770500e-01

Outputting figure to mutsig2_images.part000000000115/NMT2.3_1545_20000_0.57895_0.07135_0.27705.png
                gene_name: NMT2
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 65 percent done.
NNMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.329427e-02	ci left: 8.907739e-01	ci right 9.027938e-01	k: 8969	n:10000
KS ci ratio: 3.036773e-02	ci left: 6.153256e-01	ci right 6.344016e-01	k: 6249	n:10000
NNMT   10000 perm   2 sec   (6374 perm/sec)   p_kst 6.249000e-01   p_cons 8.969000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NNMT.3_807_10000_0.6249_0.8969_1.png
                gene_name: NNMT
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
NNT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.282739e-02	ci left: 3.456147e-01	ci right 3.644699e-01	k: 3550	n:10000
Cons ci ratio: 3.292450e-02	ci left: 5.765733e-01	ci right 5.959764e-01	k: 5863	n:10000
KS ci ratio: 8.440949e-02	ci left: 1.698592e-01	ci right 1.849292e-01	k: 1773	n:10000
NNT   10000 perm   2 sec   (5190 perm/sec)   p_kst 1.773000e-01   p_cons 5.863000e-01   p_joint 3.550000e-01

Outputting figure to mutsig2_images.part000000000115/NNT.3_3345_10000_0.1773_0.5863_0.355.png
                gene_name: NNT
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 69 percent done.
NIPSNAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.250119e-02	ci left: 2.179321e-01	ci right 2.344277e-01	k: 2261	n:10000
Cons ci ratio: 7.340334e-02	ci left: 2.136891e-01	ci right 2.300732e-01	k: 2218	n:10000
KS ci ratio: 7.989902e-02	ci left: 1.861912e-01	ci right 2.017874e-01	k: 1939	n:10000
NIPSNAP1   10000 perm   2 sec   (6559 perm/sec)   p_kst 1.939000e-01   p_cons 2.218000e-01   p_joint 2.261000e-01

Outputting figure to mutsig2_images.part000000000115/NIPSNAP1.2_895_10000_0.1939_0.2218_0.2261.png
                gene_name: NIPSNAP1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 71 percent done.
NIPSNAP3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.310239e-02	ci left: 7.335069e-01	ci right 7.507518e-01	k: 7422	n:10000
Cons ci ratio: 1.914040e-02	ci left: 7.996335e-01	ci right 8.151870e-01	k: 8075	n:10000
KS ci ratio: 5.908968e-02	ci left: 2.964797e-01	ci right 3.146337e-01	k: 3055	n:10000
NIPSNAP3A   10000 perm   2 sec   (6427 perm/sec)   p_kst 3.055000e-01   p_cons 8.075000e-01   p_joint 7.422000e-01

Outputting figure to mutsig2_images.part000000000115/NIPSNAP3A.2_768_10000_0.3055_0.8075_0.7422.png
                gene_name: NIPSNAP3A
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 73 percent done.
NIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.731777e-02	ci left: 3.972498e-01	ci right 4.166044e-01	k: 4069	n:10000
Cons ci ratio: 5.884004e-02	ci left: 2.982644e-01	ci right 3.164479e-01	k: 3073	n:10000
KS ci ratio: 2.769573e-02	ci left: 6.576653e-01	ci right 6.762373e-01	k: 6670	n:10000
NIT1   10000 perm   1 sec   (6773 perm/sec)   p_kst 6.670000e-01   p_cons 3.073000e-01   p_joint 4.069000e-01

Outputting figure to mutsig2_images.part000000000115/NIT1.2_1088_10000_0.667_0.3073_0.4069.png
                gene_name: NIT1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 75 percent done.
NKAIN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.553891e-02	ci left: 6.929276e-01	ci right 7.109546e-01	k: 7020	n:10000
Cons ci ratio: 3.923333e-02	ci left: 4.896515e-01	ci right 5.093488e-01	k: 4995	n:10000
KS ci ratio: 1.211965e-01	ci left: 8.893260e-02	ci right 1.005047e-01	k: 946	n:10000
NKAIN3   10000 perm   1 sec   (7433 perm/sec)   p_kst 9.460000e-02   p_cons 4.995000e-01   p_joint 7.020000e-01

Joint ci ratio: 2.423853e-02	ci left: 5.597480e-01	ci right 5.735326e-01	k: 11333	n:20000
Cons ci ratio: 2.747644e-02	ci left: 4.973955e-01	ci right 5.113032e-01	k: 10087	n:20000
KS ci ratio: 8.645901e-02	ci left: 8.915632e-02	ci right 9.726239e-02	k: 1863	n:20000
NKAIN3   20000 perm   3 sec   (6378 perm/sec)   p_kst 9.315000e-02   p_cons 5.043500e-01   p_joint 5.666500e-01

Outputting figure to mutsig2_images.part000000000115/NKAIN3.2_618_20000_0.09315_0.50435_0.56665.png
                gene_name: NKAIN3
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 76 percent done.
NKIRAS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.724923e-02	ci left: 3.979471e-01	ci right 4.173068e-01	k: 4076	n:10000
Cons ci ratio: 3.983416e-02	ci left: 4.820550e-01	ci right 5.017497e-01	k: 4919	n:10000
KS ci ratio: 7.094230e-02	ci left: 2.255330e-01	ci right 2.422223e-01	k: 2338	n:10000
NKIRAS2   10000 perm   1 sec   (7186 perm/sec)   p_kst 2.338000e-01   p_cons 4.919000e-01   p_joint 4.076000e-01

Outputting figure to mutsig2_images.part000000000115/NKIRAS2.2_588_10000_0.2338_0.4919_0.4076.png
                gene_name: NKIRAS2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 78 percent done.
NKRF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.727517e-02	ci left: 8.300197e-01	ci right 8.445832e-01	k: 8374	n:10000
KS ci ratio: 2.608933e-02	ci left: 6.838544e-01	ci right 7.020331e-01	k: 6930	n:10000
NKRF   10000 perm   2 sec   (5658 perm/sec)   p_kst 6.930000e-01   p_cons 8.374000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NKRF.2_2130_10000_0.693_0.8374_1.png
                gene_name: NKRF
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
NKX2-2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.652095e-02	ci left: 8.420346e-01	ci right 8.561614e-01	k: 8492	n:10000
Cons ci ratio: 1.995523e-02	ci left: 7.861410e-01	ci right 8.020873e-01	k: 7942	n:10000
KS ci ratio: 5.747302e-02	ci left: 3.082813e-01	ci right 3.266251e-01	k: 3174	n:10000
NKX2-2   10000 perm   1 sec   (6924 perm/sec)   p_kst 3.174000e-01   p_cons 7.942000e-01   p_joint 8.492000e-01

Outputting figure to mutsig2_images.part000000000115/NKX2-2.2_830_10000_0.3174_0.7942_0.8492.png
                gene_name: NKX2-2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 82 percent done.
NKX6-1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.694732e-02	ci left: 4.010349e-01	ci right 4.204171e-01	k: 4107	n:10000
KS ci ratio: 1.562761e-02	ci left: 8.560029e-01	ci right 8.695850e-01	k: 8629	n:10000
NKX6-1   10000 perm   2 sec   (6206 perm/sec)   p_kst 8.629000e-01   p_cons 4.107000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NKX6-1.2_1116_10000_0.8629_0.4107_1.png
                gene_name: NKX6-1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
NLGN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.377273e-02	ci left: 7.222933e-01	ci right 7.397719e-01	k: 7311	n:10000
Cons ci ratio: 4.551311e-02	ci left: 4.160815e-01	ci right 4.355618e-01	k: 4258	n:10000
KS ci ratio: 1.348616e-01	ci left: 7.262363e-02	ci right 8.322381e-02	k: 778	n:10000
NLGN2   10000 perm   2 sec   (5782 perm/sec)   p_kst 7.780000e-02   p_cons 4.258000e-01   p_joint 7.311000e-01

Joint ci ratio: 8.271826e-02	ci left: 9.675894e-02	ci right 1.051575e-01	k: 2018	n:20000
Cons ci ratio: 3.332707e-02	ci left: 4.020253e-01	ci right 4.157012e-01	k: 8177	n:20000
KS ci ratio: 9.390070e-02	ci left: 7.637423e-02	ci right 8.394836e-02	k: 1602	n:20000
NLGN2   20000 perm   4 sec   (5083 perm/sec)   p_kst 8.010000e-02   p_cons 4.088500e-01   p_joint 1.009000e-01

Outputting figure to mutsig2_images.part000000000115/NLGN2.2_2536_20000_0.0801_0.40885_0.1009.png
                gene_name: NLGN2
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.11 

Current progress: 85 percent done.
NLGN4Y
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.918697e-03	ci left: 9.747193e-01	ci right 9.805979e-01	k: 9778	n:10000
KS ci ratio: 3.062734e-02	ci left: 6.113069e-01	ci right 6.304227e-01	k: 6209	n:10000
NLGN4Y   10000 perm   2 sec   (5665 perm/sec)   p_kst 6.209000e-01   p_cons 9.778000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NLGN4Y.2_2625_10000_0.6209_0.9778_1.png
                gene_name: NLGN4Y
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
NLRX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.919105e-02	ci left: 3.787315e-01	ci right 3.979336e-01	k: 3883	n:10000
Cons ci ratio: 4.337237e-03	ci left: 9.856678e-01	ci right 9.900411e-01	k: 9880	n:10000
KS ci ratio: 2.794182e-01	ci left: 1.660112e-02	ci right 2.208394e-02	k: 192	n:10000
NLRX1   10000 perm   2 sec   (4913 perm/sec)   p_kst 1.920000e-02   p_cons 9.880000e-01   p_joint 3.883000e-01

Joint ci ratio: 4.915671e-02	ci left: 2.352839e-01	ci right 2.471914e-01	k: 4824	n:20000
Cons ci ratio: 3.149619e-03	ci left: 9.856503e-01	ci right 9.888057e-01	k: 19746	n:20000
KS ci ratio: 1.973228e-01	ci left: 1.743844e-02	ci right 2.130309e-02	k: 386	n:20000
NLRX1   20000 perm   4 sec   (4541 perm/sec)   p_kst 1.930000e-02   p_cons 9.873000e-01   p_joint 2.412000e-01

Joint ci ratio: 2.662524e-02	ci left: 4.138407e-01	ci right 4.250416e-01	k: 12583	n:30000
Cons ci ratio: 2.593805e-03	ci left: 9.857232e-01	ci right 9.883145e-01	k: 29612	n:30000
KS ci ratio: 1.596485e-01	ci left: 1.812542e-02	ci right 2.130189e-02	k: 590	n:30000
NLRX1   30000 perm   7 sec   (4376 perm/sec)   p_kst 1.966667e-02   p_cons 9.870667e-01   p_joint 4.194333e-01

Joint ci ratio: 5.089519e-02	ci left: 1.258533e-01	ci right 1.324507e-01	k: 5165	n:40000
Cons ci ratio: 2.262383e-03	ci left: 9.857111e-01	ci right 9.879674e-01	k: 39475	n:40000
KS ci ratio: 1.373737e-01	ci left: 1.857798e-02	ci right 2.134233e-02	k: 797	n:40000
NLRX1   40000 perm   9 sec   (4268 perm/sec)   p_kst 1.992500e-02   p_cons 9.868750e-01   p_joint 1.291250e-01

Joint ci ratio: 3.152982e-02	ci left: 2.324028e-01	ci right 2.398678e-01	k: 11806	n:50000
Cons ci ratio: 2.038325e-03	ci left: 9.856364e-01	ci right 9.876665e-01	k: 49334	n:50000
KS ci ratio: 1.217243e-01	ci left: 1.908180e-02	ci right 2.157433e-02	k: 1015	n:50000
NLRX1   50000 perm   12 sec   (4163 perm/sec)   p_kst 2.030000e-02   p_cons 9.866800e-01   p_joint 2.361200e-01

Joint ci ratio: 2.821002e-02	ci left: 2.400202e-01	ci right 2.469047e-01	k: 14607	n:60000
Cons ci ratio: 1.863804e-03	ci left: 9.856822e-01	ci right 9.875370e-01	k: 59198	n:60000
KS ci ratio: 1.115491e-01	ci left: 1.904060e-02	ci right 2.130615e-02	k: 1209	n:60000
NLRX1   60000 perm   15 sec   (4078 perm/sec)   p_kst 2.015000e-02   p_cons 9.866333e-01   p_joint 2.434500e-01

Joint ci ratio: 2.607764e-02	ci left: 2.408361e-01	ci right 2.472137e-01	k: 17081	n:70000
Cons ci ratio: 1.716355e-03	ci left: 9.858974e-01	ci right 9.876047e-01	k: 69074	n:70000
KS ci ratio: 1.027434e-01	ci left: 1.932377e-02	ci right 2.143053e-02	k: 1425	n:70000
NLRX1   70000 perm   18 sec   (3995 perm/sec)   p_kst 2.035714e-02   p_cons 9.867714e-01   p_joint 2.440143e-01

Joint ci ratio: 3.063838e-02	ci left: 1.672537e-01	ci right 1.724703e-01	k: 13588	n:80000
Cons ci ratio: 1.594394e-03	ci left: 9.861394e-01	ci right 9.877250e-01	k: 78956	n:80000
KS ci ratio: 9.600901e-02	ci left: 1.943159e-02	ci right 2.140341e-02	k: 1632	n:80000
NLRX1   80000 perm   21 sec   (3884 perm/sec)   p_kst 2.040000e-02   p_cons 9.869500e-01   p_joint 1.698500e-01

Outputting figure to mutsig2_images.part000000000115/NLRX1.2_3128_80000_0.0204_0.98695_0.16985.png
                gene_name: NLRX1
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 89 percent done.
NMI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.733309e-03	ci left: 9.372385e-01	ci right 9.465020e-01	k: 9420	n:10000
Cons ci ratio: 6.577857e-03	ci left: 9.693152e-01	ci right 9.758056e-01	k: 9727	n:10000
KS ci ratio: 3.493343e-02	ci left: 5.474992e-01	ci right 5.670674e-01	k: 5573	n:10000
NMI   10000 perm   2 sec   (6617 perm/sec)   p_kst 5.573000e-01   p_cons 9.727000e-01   p_joint 9.420000e-01

Outputting figure to mutsig2_images.part000000000115/NMI.2_952_10000_0.5573_0.9727_0.942.png
                gene_name: NMI
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 91 percent done.
NMNAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.222363e-02	ci left: 5.870082e-01	ci right 6.063355e-01	k: 5967	n:10000
KS ci ratio: 1.583820e-02	ci left: 8.527383e-01	ci right 8.664514e-01	k: 8597	n:10000
NMNAT1   10000 perm   1 sec   (6879 perm/sec)   p_kst 8.597000e-01   p_cons 5.967000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NMNAT1.2_856_10000_0.8597_0.5967_1.png
                gene_name: NMNAT1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
NMNAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.081773e-02	ci left: 9.241000e-01	ci right 9.342483e-01	k: 9293	n:10000
Cons ci ratio: 3.586320e-02	ci left: 5.344770e-01	ci right 5.540972e-01	k: 5443	n:10000
KS ci ratio: 2.538644e-02	ci left: 6.954487e-01	ci right 7.134321e-01	k: 7045	n:10000
NMNAT2   10000 perm   1 sec   (6775 perm/sec)   p_kst 7.045000e-01   p_cons 5.443000e-01   p_joint 9.293000e-01

Outputting figure to mutsig2_images.part000000000115/NMNAT2.2_1042_10000_0.7045_0.5443_0.9293.png
                gene_name: NMNAT2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 95 percent done.
NMNAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.977048e-02	ci left: 4.828546e-01	ci right 5.025497e-01	k: 4927	n:10000
KS ci ratio: 1.590375e-02	ci left: 8.517184e-01	ci right 8.654720e-01	k: 8587	n:10000
NMNAT3   10000 perm   1 sec   (6807 perm/sec)   p_kst 8.587000e-01   p_cons 4.927000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000115/NMNAT3.2_660_10000_0.8587_0.4927_1.png
                gene_name: NMNAT3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
NMRAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
Cons ci ratio: 7.635134e-02	ci left: 2.005737e-01	ci right 2.165964e-01	k: 2085	n:10000
KS ci ratio: 1.045720e-01	ci left: 1.167209e-01	ci right 1.296994e-01	k: 1231	n:10000
NMRAL1   10000 perm   1 sec   (6694 perm/sec)   p_kst 1.231000e-01   p_cons 2.085000e-01   p_joint 3.267000e-01

Joint ci ratio: 2.866387e-02	ci left: 4.762523e-01	ci right 4.901526e-01	k: 9664	n:20000
Cons ci ratio: 5.390757e-02	ci left: 2.034321e-01	ci right 2.147526e-01	k: 4181	n:20000
KS ci ratio: 7.273787e-02	ci left: 1.221687e-01	ci right 1.314401e-01	k: 2535	n:20000
NMRAL1   20000 perm   4 sec   (5690 perm/sec)   p_kst 1.267500e-01   p_cons 2.090500e-01   p_joint 4.832000e-01

Outputting figure to mutsig2_images.part000000000115/NMRAL1.2_920_20000_0.12675_0.20905_0.4832.png
                gene_name: NMRAL1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 98 percent done.
NOC2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.165822e-02	ci left: 9.132737e-01	ci right 9.240809e-01	k: 9188	n:10000
Cons ci ratio: 2.825238e-02	ci left: 6.487080e-01	ci right 6.673999e-01	k: 6581	n:10000
KS ci ratio: 2.591170e-02	ci left: 6.867776e-01	ci right 7.049082e-01	k: 6959	n:10000
NOC2L   10000 perm   2 sec   (5649 perm/sec)   p_kst 6.959000e-01   p_cons 6.581000e-01   p_joint 9.188000e-01

Outputting figure to mutsig2_images.part000000000115/NOC2L.2_2326_10000_0.6959_0.6581_0.9188.png
                gene_name: NOC2L
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000115
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 115 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1425>
Subject: Job 9894038: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1425>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000116> was used as the working directory.
Started at Sat Oct  6 00:21:25 2012
Results reported at Sat Oct  6 01:10:18 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000116.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000116.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 116  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000116.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3229.36 sec.
    Max Memory :      3643 MB
    Max Swap   :      5999 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
116
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 116
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 116: processing genes 10368 - 10457
Calculating significance of each gene.
Using projection method.
10368	NOD1	9.212557e-01
10369	NOD2	9.128345e-01
10370	NODAL	6.406194e-01
10371	NOG	1
10372	NOL10	5.852049e-01
10373	NOL11	6.371110e-01
10374	NOL12	1
10375	NOL3	1
10376	NOL4	1.912668e-02
10377	NOL6	9.501471e-01
10378	NOL7	1.716766e-01
10379	NOL8	6.505597e-01
10380	NOL9	3.884637e-01
10381	NOLC1	2.049949e-02
10382	NOM1	1.538539e-01
10383	NOMO1	7.486347e-01
10384	NOMO2	8.156998e-01
10385	NOMO3	8.978927e-01
10386	NONO	5.428079e-01
10387	NOP10	1
10388	NOP14	6.179398e-01
10389	NOP16	1
10390	NOP2	9.493747e-01
10391	NOP56	8.863248e-01
10392	NOP58	4.804284e-01
10393	NOS1	5.297522e-01
10394	NOS1AP	5.155142e-01
10395	NOS2	8.569921e-01
10396	NOS3	9.636916e-01
10397	NOSIP	1
10398	NOSTRIN	8.751963e-01
10399	NOTCH1	1
10400	NOTCH2	5.036651e-01
10401	NOTCH2NL	1.393449e-01
10402	NOTCH3	1.230024e-01
10403	NOTCH4	5.698879e-01
10404	NOTUM	1
10405	NOV	7.180011e-01
10406	NOVA1	2.705124e-02
10407	NOVA2	3.167288e-01
10408	NOX1	8.475029e-01
10409	NOX3	1.072249e-01
10410	NOX4	1.479819e-01
10411	NOX5	9.662767e-01
In gene NOXA1 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 951     n = 1	mu =   8.55e-07
10412	NOXA1	5.798205e-01
10413	NOXO1	1
10414	NPAS1	8.984710e-01
10415	NPAS2	5.389261e-01
10416	NPAS3	7.120315e-01
10417	NPAS4	2.881776e-02
10418	NPAT	7.733179e-01
10419	NPBWR1	5.903685e-01
10420	NPBWR2	1
10421	NPC1	7.456562e-01
10422	NPC1L1	9.380993e-01
10423	NPC2	5.243171e-01
10424	NPDC1	4.312138e-01
10425	NPEPL1	9.107773e-01
10426	NPEPPS	3.939318e-01
10427	NPFF	1
10428	NPFFR1	1
10429	NPFFR2	4.227761e-01
10430	NPHP1	3.656893e-01
10431	NPHP3	8.848447e-01
10432	NPHP4	9.994573e-01
10433	NPHS1	6.327928e-02
10434	NPHS2	3.355131e-01
10435	NPIP	1
10436	NPL	1.453531e-01
10437	NPLOC4	7.926682e-01
10438	NPM1	7.515261e-01
10439	NPM2	1
10440	NPM3	1.783481e-01
10441	NPNT	8.947319e-01
10442	NPPA	3.157901e-01
10443	NPPB	3.221859e-01
10444	NPPC	1
10445	NPR1	2.132678e-01
10446	NPR2	3.724099e-01
10447	NPR3	6.955064e-01
10448	NPRL2	1
10449	NPRL3	6.496593e-01
10450	NPS	1
10451	NPSR1	4.391482e-02
10452	NPTN	4.995628e-01
10453	NPTX1	7.314443e-01
10454	NPTX2	4.082205e-01
10455	NPTXR	3.727878e-01
10456	NPVF	1.419996e-01
10457	NPW	1
Done

Running MutSig 2:
Scatter job 116: processing genes 10368 - 10457
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NOTCH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.372187e-02	ci left: 1.722191e-01	ci right 1.873680e-01	k: 1797	n:10000
Cons ci ratio: 1.907924e-01	ci left: 3.662531e-02	ci right 4.444524e-02	k: 404	n:10000
KS ci ratio: 4.781136e-02	ci left: 3.922704e-01	ci right 4.115868e-01	k: 4019	n:10000
NOTCH3   10000 perm   3 sec   (3165 perm/sec)   p_kst 4.019000e-01   p_cons 4.040000e-02   p_joint 1.797000e-01

Joint ci ratio: 8.336270e-02	ci left: 9.538497e-02	ci right 1.037319e-01	k: 1990	n:20000
Cons ci ratio: 1.324614e-01	ci left: 3.916497e-02	ci right 4.476918e-02	k: 838	n:20000
KS ci ratio: 3.379339e-02	ci left: 3.953441e-01	ci right 4.089844e-01	k: 8043	n:20000
NOTCH3   20000 perm   11 sec   (1793 perm/sec)   p_kst 4.021500e-01   p_cons 4.190000e-02   p_joint 9.950000e-02

Joint ci ratio: 6.554150e-02	ci left: 1.030309e-01	ci right 1.100455e-01	k: 3195	n:30000
Cons ci ratio: 1.060823e-01	ci left: 4.121943e-02	ci right 4.586949e-02	k: 1305	n:30000
KS ci ratio: 2.767644e-02	ci left: 3.951479e-01	ci right 4.062713e-01	k: 12021	n:30000
NOTCH3   30000 perm   15 sec   (1990 perm/sec)   p_kst 4.007000e-01   p_cons 4.350000e-02   p_joint 1.065000e-01

Joint ci ratio: 5.308914e-02	ci left: 1.167565e-01	ci right 1.231488e-01	k: 4797	n:40000
Cons ci ratio: 9.013425e-02	ci left: 4.311135e-02	ci right 4.720501e-02	k: 1805	n:40000
KS ci ratio: 2.325528e-02	ci left: 4.104647e-01	ci right 4.201476e-01	k: 16612	n:40000
NOTCH3   40000 perm   19 sec   (2105 perm/sec)   p_kst 4.153000e-01   p_cons 4.512500e-02   p_joint 1.199250e-01

Outputting figure to mutsig2_images.part000000000116/NOTCH3.15_7098_40000_0.4153_0.045125_0.11993.png
                gene_name: NOTCH3
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 2 percent done.
NPHS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.572780e-02	ci left: 4.137890e-01	ci right 4.332556e-01	k: 4235	n:10000
Cons ci ratio: 1.881975e-02	ci left: 8.049125e-01	ci right 8.203049e-01	k: 8127	n:10000
KS ci ratio: 6.442281e-02	ci left: 2.614155e-01	ci right 2.789186e-01	k: 2701	n:10000
NPHS1   10000 perm   3 sec   (3881 perm/sec)   p_kst 2.701000e-01   p_cons 8.127000e-01   p_joint 4.235000e-01

Outputting figure to mutsig2_images.part000000000116/NPHS1.14_3842_10000_0.2701_0.8127_0.4235.png
                gene_name: NPHS1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 4 percent done.
NOTCH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.143806e-02	ci left: 3.578414e-01	ci right 3.768359e-01	k: 3673	n:10000
Cons ci ratio: 7.422056e-02	ci left: 2.099406e-01	ci right 2.262240e-01	k: 2180	n:10000
KS ci ratio: 3.854123e-02	ci left: 4.985503e-01	ci right 5.182448e-01	k: 5084	n:10000
NOTCH2   10000 perm   3 sec   (2972 perm/sec)   p_kst 5.084000e-01   p_cons 2.180000e-01   p_joint 3.673000e-01

Outputting figure to mutsig2_images.part000000000116/NOTCH2.13_7552_10000_0.5084_0.218_0.3673.png
                gene_name: NOTCH2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 5 percent done.
NOS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.437322e-02	ci left: 2.092502e-01	ci right 2.255148e-01	k: 2173	n:10000
Cons ci ratio: 8.279696e-02	ci left: 1.754646e-01	ci right 1.907205e-01	k: 1830	n:10000
KS ci ratio: 8.726408e-02	ci left: 1.605234e-01	ci right 1.752706e-01	k: 1678	n:10000
NOS1   10000 perm   2 sec   (4344 perm/sec)   p_kst 1.678000e-01   p_cons 1.830000e-01   p_joint 2.173000e-01

Outputting figure to mutsig2_images.part000000000116/NOS1.11_4417_10000_0.1678_0.183_0.2173.png
                gene_name: NOS1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 7 percent done.
NPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.003453e-02	ci left: 7.848229e-01	ci right 8.008061e-01	k: 7929	n:10000
Cons ci ratio: 3.239124e-02	ci left: 5.844994e-01	ci right 6.038457e-01	k: 5942	n:10000
KS ci ratio: 4.650411e-02	ci left: 4.056177e-01	ci right 4.250317e-01	k: 4153	n:10000
NPR2   10000 perm   2 sec   (4756 perm/sec)   p_kst 4.153000e-01   p_cons 5.942000e-01   p_joint 7.929000e-01

Outputting figure to mutsig2_images.part000000000116/NPR2.10_3232_10000_0.4153_0.5942_0.7929.png
                gene_name: NPR2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 9 percent done.
NPAS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.107243e-02	ci left: 1.491353e-01	ci right 1.634655e-01	k: 1562	n:10000
Cons ci ratio: 6.796775e-02	ci left: 2.410427e-01	ci right 2.581034e-01	k: 2495	n:10000
KS ci ratio: 1.141388e-01	ci left: 9.944712e-02	ci right 1.115838e-01	k: 1054	n:10000
NPAS4   10000 perm   2 sec   (4828 perm/sec)   p_kst 1.054000e-01   p_cons 2.495000e-01   p_joint 1.562000e-01

Joint ci ratio: 7.150001e-02	ci left: 1.259590e-01	ci right 1.353487e-01	k: 2612	n:20000
Cons ci ratio: 4.512488e-02	ci left: 2.677277e-01	ci right 2.801381e-01	k: 5478	n:20000
KS ci ratio: 8.007495e-02	ci left: 1.026992e-01	ci right 1.113154e-01	k: 2139	n:20000
NPAS4   20000 perm   5 sec   (4361 perm/sec)   p_kst 1.069500e-01   p_cons 2.739000e-01   p_joint 1.306000e-01

Outputting figure to mutsig2_images.part000000000116/NPAS4.9_2441_20000_0.10695_0.2739_0.1306.png
                gene_name: NPAS4
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 11 percent done.
NOLC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.444986e-02	ci left: 4.276467e-01	ci right 4.471898e-01	k: 4374	n:10000
Cons ci ratio: 2.821473e-02	ci left: 6.493117e-01	ci right 6.679958e-01	k: 6587	n:10000
KS ci ratio: 6.440648e-02	ci left: 2.615144e-01	ci right 2.790196e-01	k: 2702	n:10000
NOLC1   10000 perm   2 sec   (4499 perm/sec)   p_kst 2.702000e-01   p_cons 6.587000e-01   p_joint 4.374000e-01

Outputting figure to mutsig2_images.part000000000116/NOLC1.8_2152_10000_0.2702_0.6587_0.4374.png
                gene_name: NOLC1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 12 percent done.
NOX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.454701e-02	ci left: 8.724474e-01	ci right 8.853309e-01	k: 8790	n:10000
KS ci ratio: 1.994303e-02	ci left: 7.863438e-01	ci right 8.022844e-01	k: 7944	n:10000
NOX3   10000 perm   2 sec   (5314 perm/sec)   p_kst 7.944000e-01   p_cons 8.790000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOX3.8_1759_10000_0.7944_0.879_1.png
                gene_name: NOX3
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
NOL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.580770e-02	ci left: 6.884913e-01	ci right 7.065935e-01	k: 6976	n:10000
Cons ci ratio: 7.505740e-02	ci left: 2.061931e-01	ci right 2.223737e-01	k: 2142	n:10000
KS ci ratio: 2.954424e-02	ci left: 6.281901e-01	ci right 6.471296e-01	k: 6377	n:10000
NOL4   10000 perm   2 sec   (4969 perm/sec)   p_kst 6.377000e-01   p_cons 2.142000e-01   p_joint 6.976000e-01

Outputting figure to mutsig2_images.part000000000116/NOL4.7_1961_10000_0.6377_0.2142_0.6976.png
                gene_name: NOL4
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 16 percent done.
NOM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.038774e-02	ci left: 1.843208e-01	ci right 1.998590e-01	k: 1920	n:10000
Cons ci ratio: 1.119563e-01	ci left: 1.030540e-01	ci right 1.153747e-01	k: 1091	n:10000
KS ci ratio: 6.513262e-02	ci left: 2.571609e-01	ci right 2.745757e-01	k: 2658	n:10000
NOM1   10000 perm   2 sec   (4646 perm/sec)   p_kst 2.658000e-01   p_cons 1.091000e-01   p_joint 1.920000e-01

Joint ci ratio: 6.365241e-02	ci left: 1.543023e-01	ci right 1.644969e-01	k: 3187	n:20000
Cons ci ratio: 8.022195e-02	ci left: 1.023554e-01	ci right 1.109593e-01	k: 2132	n:20000
KS ci ratio: 4.569311e-02	ci left: 2.628136e-01	ci right 2.751536e-01	k: 5379	n:20000
NOM1   20000 perm   5 sec   (4201 perm/sec)   p_kst 2.689500e-01   p_cons 1.066000e-01   p_joint 1.593500e-01

Outputting figure to mutsig2_images.part000000000116/NOM1.7_2627_20000_0.26895_0.1066_0.15935.png
                gene_name: NOM1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 18 percent done.
NOTCH4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.119136e-02	ci left: 9.193534e-01	ci right 9.297976e-01	k: 9247	n:10000
Cons ci ratio: 4.845369e-02	ci left: 3.858982e-01	ci right 4.051627e-01	k: 3955	n:10000
KS ci ratio: 7.926439e-03	ci left: 9.568097e-01	ci right 9.645190e-01	k: 9608	n:10000
NOTCH4   10000 perm   3 sec   (3496 perm/sec)   p_kst 9.608000e-01   p_cons 3.955000e-01   p_joint 9.247000e-01

Outputting figure to mutsig2_images.part000000000116/NOTCH4.7_6132_10000_0.9608_0.3955_0.9247.png
                gene_name: NOTCH4
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 19 percent done.
NOX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.321706e-02	ci left: 7.315870e-01	ci right 7.488729e-01	k: 7403	n:10000
KS ci ratio: 2.581381e-02	ci left: 6.883905e-01	ci right 7.064943e-01	k: 6975	n:10000
NOX4   10000 perm   2 sec   (5238 perm/sec)   p_kst 6.975000e-01   p_cons 7.403000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOX4.7_1809_10000_0.6975_0.7403_1.png
                gene_name: NOX4
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
NPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.014148e-02	ci left: 6.188425e-01	ci right 6.378826e-01	k: 6284	n:10000
Cons ci ratio: 2.231802e-02	ci left: 7.466492e-01	ci right 7.636020e-01	k: 7552	n:10000
KS ci ratio: 4.755381e-02	ci left: 3.948596e-01	ci right 4.141961e-01	k: 4045	n:10000
NPC1   10000 perm   2 sec   (4381 perm/sec)   p_kst 4.045000e-01   p_cons 7.552000e-01   p_joint 6.284000e-01

Outputting figure to mutsig2_images.part000000000116/NPC1.7_3937_10000_0.4045_0.7552_0.6284.png
                gene_name: NPC1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 23 percent done.
NOS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.465614e-02	ci left: 8.708117e-01	ci right 8.837677e-01	k: 8774	n:10000
Cons ci ratio: 9.047443e-03	ci left: 9.450255e-01	ci right 9.537104e-01	k: 9495	n:10000
KS ci ratio: 2.242662e-02	ci left: 7.448289e-01	ci right 7.618233e-01	k: 7534	n:10000
NOS2   10000 perm   2 sec   (4289 perm/sec)   p_kst 7.534000e-01   p_cons 9.495000e-01   p_joint 8.774000e-01

Outputting figure to mutsig2_images.part000000000116/NOS2.6_3566_10000_0.7534_0.9495_0.8774.png
                gene_name: NOS2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 25 percent done.
NOVA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.655262e-02	ci left: 1.627829e-01	ci right 1.776098e-01	k: 1701	n:10000
Cons ci ratio: 1.714031e-01	ci left: 4.542628e-02	ci right 5.403844e-02	k: 496	n:10000
KS ci ratio: 4.216718e-02	ci left: 4.536882e-01	ci right 4.733331e-01	k: 4635	n:10000
NOVA1   10000 perm   2 sec   (5692 perm/sec)   p_kst 4.635000e-01   p_cons 4.960000e-02   p_joint 1.701000e-01

Joint ci ratio: 6.571201e-02	ci left: 1.460638e-01	ci right 1.560379e-01	k: 3020	n:20000
Cons ci ratio: 1.213315e-01	ci left: 4.658307e-02	ci right 5.264873e-02	k: 991	n:20000
KS ci ratio: 3.005100e-02	ci left: 4.527244e-01	ci right 4.665874e-01	k: 9193	n:20000
NOVA1   20000 perm   4 sec   (5098 perm/sec)   p_kst 4.596500e-01   p_cons 4.955000e-02   p_joint 1.510000e-01

Joint ci ratio: 5.864259e-02	ci left: 1.258188e-01	ci right 1.334531e-01	k: 3888	n:30000
Cons ci ratio: 9.803211e-02	ci left: 4.811419e-02	ci right 5.310663e-02	k: 1517	n:30000
KS ci ratio: 2.455781e-02	ci left: 4.535818e-01	ci right 4.648928e-01	k: 13777	n:30000
NOVA1   30000 perm   6 sec   (4850 perm/sec)   p_kst 4.592333e-01   p_cons 5.056667e-02   p_joint 1.296000e-01

Outputting figure to mutsig2_images.part000000000116/NOVA1.6_1575_30000_0.45923_0.050567_0.1296.png
                gene_name: NOVA1
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 26 percent done.
NPEPPS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.471812e-02	ci left: 2.596344e-01	ci right 2.771008e-01	k: 2683	n:10000
Cons ci ratio: 4.187168e-02	ci left: 4.571824e-01	ci right 4.768369e-01	k: 4670	n:10000
KS ci ratio: 7.747908e-02	ci left: 1.958434e-01	ci right 2.117295e-01	k: 2037	n:10000
NPEPPS   10000 perm   2 sec   (4335 perm/sec)   p_kst 2.037000e-01   p_cons 4.670000e-01   p_joint 2.683000e-01

Outputting figure to mutsig2_images.part000000000116/NPEPPS.6_2852_10000_0.2037_0.467_0.2683.png
                gene_name: NPEPPS
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 28 percent done.
NPR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.366775e-01	ci left: 7.078334e-02	ci right 8.126524e-02	k: 759	n:10000
Cons ci ratio: 7.876742e-02	ci left: 1.906225e-01	ci right 2.063536e-01	k: 1984	n:10000
KS ci ratio: 1.554271e-01	ci left: 5.513502e-02	ci right 6.452344e-02	k: 597	n:10000
NPR1   10000 perm   2 sec   (4405 perm/sec)   p_kst 5.970000e-02   p_cons 1.984000e-01   p_joint 7.590000e-02

Joint ci ratio: 1.256566e-01	ci left: 4.347738e-02	ci right 4.935540e-02	k: 927	n:20000
Cons ci ratio: 5.569768e-02	ci left: 1.929417e-01	ci right 2.040461e-01	k: 3969	n:20000
KS ci ratio: 1.115521e-01	ci left: 5.489734e-02	ci right 6.143185e-02	k: 1162	n:20000
NPR1   20000 perm   5 sec   (3955 perm/sec)   p_kst 5.810000e-02   p_cons 1.984500e-01   p_joint 4.635000e-02

Joint ci ratio: 9.022085e-02	ci left: 5.652296e-02	ci right 6.189613e-02	k: 1775	n:30000
Cons ci ratio: 4.479772e-02	ci left: 1.987581e-01	ci right 2.078994e-01	k: 6099	n:30000
KS ci ratio: 9.159933e-02	ci left: 5.489200e-02	ci right 6.019409e-02	k: 1725	n:30000
NPR1   30000 perm   8 sec   (3831 perm/sec)   p_kst 5.750000e-02   p_cons 2.033000e-01   p_joint 5.916667e-02

Outputting figure to mutsig2_images.part000000000116/NPR1.6_3274_30000_0.0575_0.2033_0.059167.png
                gene_name: NPR1
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.062 

Current progress: 30 percent done.
NPSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.064666e-02	ci left: 2.270141e-01	ci right 2.437403e-01	k: 2353	n:10000
Cons ci ratio: 5.922919e-02	ci left: 2.954883e-01	ci right 3.136257e-01	k: 3045	n:10000
KS ci ratio: 9.222915e-02	ci left: 1.458981e-01	ci right 1.601047e-01	k: 1529	n:10000
NPSR1   10000 perm   2 sec   (5511 perm/sec)   p_kst 1.529000e-01   p_cons 3.045000e-01   p_joint 2.353000e-01

Outputting figure to mutsig2_images.part000000000116/NPSR1.6_1265_10000_0.1529_0.3045_0.2353.png
                gene_name: NPSR1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 32 percent done.
NOD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.496620e-02	ci left: 2.581502e-01	ci right 2.755858e-01	k: 2668	n:10000
Cons ci ratio: 7.283413e-02	ci left: 2.163531e-01	ci right 2.328076e-01	k: 2245	n:10000
KS ci ratio: 6.518270e-02	ci left: 2.568641e-01	ci right 2.742727e-01	k: 2655	n:10000
NOD2   10000 perm   2 sec   (4635 perm/sec)   p_kst 2.655000e-01   p_cons 2.245000e-01   p_joint 2.668000e-01

Outputting figure to mutsig2_images.part000000000116/NOD2.5_3171_10000_0.2655_0.2245_0.2668.png
                gene_name: NOD2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 33 percent done.
NOL8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.189885e-01	ci left: 9.204578e-02	ci right 1.037896e-01	k: 978	n:10000
Cons ci ratio: 3.123971e-01	ci left: 1.307848e-02	ci right 1.800961e-02	k: 154	n:10000
KS ci ratio: 3.054284e-02	ci left: 6.126129e-01	ci right 6.317159e-01	k: 6222	n:10000
NOL8   10000 perm   2 sec   (4168 perm/sec)   p_kst 6.222000e-01   p_cons 1.540000e-02   p_joint 9.780000e-02

Joint ci ratio: 9.837429e-02	ci left: 6.992060e-02	ci right 7.720396e-02	k: 1470	n:20000
Cons ci ratio: 2.143265e-01	ci left: 1.468536e-02	ci right 1.825721e-02	k: 328	n:20000
KS ci ratio: 2.191396e-02	ci left: 6.085660e-01	ci right 6.221004e-01	k: 12307	n:20000
NOL8   20000 perm   5 sec   (3844 perm/sec)   p_kst 6.153500e-01   p_cons 1.640000e-02   p_joint 7.350000e-02

Joint ci ratio: 1.041381e-01	ci left: 4.274667e-02	ci right 4.747526e-02	k: 1352	n:30000
Cons ci ratio: 1.752693e-01	ci left: 1.496121e-02	ci right 1.786686e-02	k: 491	n:30000
KS ci ratio: 1.784954e-02	ci left: 6.109701e-01	ci right 6.220074e-01	k: 18495	n:30000
NOL8   30000 perm   8 sec   (3711 perm/sec)   p_kst 6.165000e-01   p_cons 1.636667e-02   p_joint 4.506667e-02

Joint ci ratio: 8.930874e-02	ci left: 4.389420e-02	ci right 4.802204e-02	k: 1837	n:40000
Cons ci ratio: 1.516708e-01	ci left: 1.517804e-02	ci right 1.769286e-02	k: 656	n:40000
KS ci ratio: 1.551637e-02	ci left: 6.099351e-01	ci right 6.194982e-01	k: 24589	n:40000
NOL8   40000 perm   11 sec   (3602 perm/sec)   p_kst 6.147250e-01   p_cons 1.640000e-02   p_joint 4.592500e-02

Joint ci ratio: 7.021354e-02	ci left: 5.661595e-02	ci right 6.075547e-02	k: 2933	n:50000
Cons ci ratio: 1.350125e-01	ci left: 1.545955e-02	ci right 1.771708e-02	k: 828	n:50000
KS ci ratio: 1.411395e-02	ci left: 6.024223e-01	ci right 6.110053e-01	k: 30336	n:50000
NOL8   50000 perm   14 sec   (3521 perm/sec)   p_kst 6.067200e-01   p_cons 1.656000e-02   p_joint 5.866000e-02

Joint ci ratio: 7.071692e-02	ci left: 4.699128e-02	ci right 5.045254e-02	k: 2922	n:60000
Cons ci ratio: 1.235527e-01	ci left: 1.547964e-02	ci right 1.753417e-02	k: 989	n:60000
KS ci ratio: 1.284928e-02	ci left: 6.040969e-01	ci right 6.119260e-01	k: 36481	n:60000
NOL8   60000 perm   17 sec   (3454 perm/sec)   p_kst 6.080167e-01   p_cons 1.648333e-02   p_joint 4.870000e-02

Joint ci ratio: 6.647282e-02	ci left: 4.575315e-02	ci right 4.891308e-02	k: 3312	n:70000
Cons ci ratio: 1.150990e-01	ci left: 1.536102e-02	ci right 1.725081e-02	k: 1140	n:70000
KS ci ratio: 1.187163e-02	ci left: 6.053735e-01	ci right 6.126175e-01	k: 42630	n:70000
NOL8   70000 perm   21 sec   (3392 perm/sec)   p_kst 6.090000e-01   p_cons 1.628571e-02   p_joint 4.731429e-02

Joint ci ratio: 6.068288e-02	ci left: 4.806863e-02	ci right 5.108914e-02	k: 3965	n:80000
Cons ci ratio: 1.082576e-01	ci left: 1.525135e-02	ci right 1.700900e-02	k: 1289	n:80000
KS ci ratio: 1.058034e-02	ci left: 6.284343e-01	ci right 6.351312e-01	k: 50543	n:80000
NOL8   80000 perm   24 sec   (3332 perm/sec)   p_kst 6.317875e-01   p_cons 1.611250e-02   p_joint 4.956250e-02

Joint ci ratio: 5.755080e-02	ci left: 4.760965e-02	ci right 5.044173e-02	k: 4411	n:90000
Cons ci ratio: 1.017196e-01	ci left: 1.540695e-02	ci right 1.706889e-02	k: 1460	n:90000
KS ci ratio: 1.021869e-02	ci left: 6.173203e-01	ci right 6.236720e-01	k: 55845	n:90000
NOL8   90000 perm   27 sec   (3276 perm/sec)   p_kst 6.205000e-01   p_cons 1.622222e-02   p_joint 4.901111e-02

Joint ci ratio: 5.647775e-02	ci left: 4.466048e-02	ci right 4.726594e-02	k: 4595	n:100000
Cons ci ratio: 9.623894e-02	ci left: 1.553399e-02	ci right 1.711424e-02	k: 1631	n:100000
KS ci ratio: 9.688133e-03	ci left: 6.177844e-01	ci right 6.238086e-01	k: 62080	n:100000
NOL8   100000 perm   31 sec   (3225 perm/sec)   p_kst 6.208000e-01   p_cons 1.631000e-02   p_joint 4.595000e-02

Outputting figure to mutsig2_images.part000000000116/NOL8.5_3568_100000_0.6208_0.01631_0.04595.png
                gene_name: NOL8
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.047 

Current progress: 35 percent done.
NOP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.693860e-02	ci left: 6.699500e-01	ci right 6.883455e-01	k: 6792	n:10000
Cons ci ratio: 3.747619e-02	ci left: 5.125547e-01	ci right 5.322323e-01	k: 5224	n:10000
KS ci ratio: 2.422036e-02	ci left: 7.148214e-01	ci right 7.324482e-01	k: 7237	n:10000
NOP14   10000 perm   2 sec   (4497 perm/sec)   p_kst 7.237000e-01   p_cons 5.224000e-01   p_joint 6.792000e-01

Outputting figure to mutsig2_images.part000000000116/NOP14.5_2646_10000_0.7237_0.5224_0.6792.png
                gene_name: NOP14
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 37 percent done.
NPAS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.761308e-02	ci left: 3.942620e-01	ci right 4.135940e-01	k: 4039	n:10000
Cons ci ratio: 7.959375e-02	ci left: 1.873727e-01	ci right 2.030052e-01	k: 1951	n:10000
KS ci ratio: 4.114718e-02	ci left: 4.658700e-01	ci right 4.855441e-01	k: 4757	n:10000
NPAS2   10000 perm   2 sec   (5089 perm/sec)   p_kst 4.757000e-01   p_cons 1.951000e-01   p_joint 4.039000e-01

Outputting figure to mutsig2_images.part000000000116/NPAS2.5_2555_10000_0.4757_0.1951_0.4039.png
                gene_name: NPAS2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 39 percent done.
NPAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
Cons ci ratio: 1.213381e-01	ci left: 8.873809e-02	ci right 1.002994e-01	k: 944	n:10000
KS ci ratio: 1.059997e-01	ci left: 1.138876e-01	ci right 1.267345e-01	k: 1202	n:10000
NPAT   10000 perm   3 sec   (3968 perm/sec)   p_kst 1.202000e-01   p_cons 9.440000e-02   p_joint 4.450000e-02

Joint ci ratio: 8.088140e-02	ci left: 1.008332e-01	ci right 1.093820e-01	k: 2101	n:20000
Cons ci ratio: 8.352586e-02	ci left: 9.504152e-02	ci right 1.033754e-01	k: 1983	n:20000
KS ci ratio: 7.120254e-02	ci left: 1.268944e-01	ci right 1.363130e-01	k: 2631	n:20000
NPAT   20000 perm   5 sec   (3637 perm/sec)   p_kst 1.315500e-01   p_cons 9.915000e-02   p_joint 1.050500e-01

Outputting figure to mutsig2_images.part000000000116/NPAT.5_4356_20000_0.13155_0.09915_0.10505.png
                gene_name: NPAT
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 40 percent done.
NPHP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.366475e-02	ci left: 8.854448e-01	ci right 8.977261e-01	k: 8917	n:10000
Cons ci ratio: 4.348773e-02	ci left: 4.384192e-01	ci right 4.580110e-01	k: 4482	n:10000
KS ci ratio: 2.032688e-02	ci left: 7.799572e-01	ci right 7.960747e-01	k: 7881	n:10000
NPHP1   10000 perm   2 sec   (4920 perm/sec)   p_kst 7.881000e-01   p_cons 4.482000e-01   p_joint 8.917000e-01

Outputting figure to mutsig2_images.part000000000116/NPHP1.5_2282_10000_0.7881_0.4482_0.8917.png
                gene_name: NPHP1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 42 percent done.
NOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.202778e-02	ci left: 2.764632e-01	ci right 2.942620e-01	k: 2853	n:10000
KS ci ratio: 2.101274e-02	ci left: 7.685089e-01	ci right 7.849296e-01	k: 7768	n:10000
NOD1   10000 perm   2 sec   (4481 perm/sec)   p_kst 7.768000e-01   p_cons 2.853000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOD1.4_2906_10000_0.7768_0.2853_1.png
                gene_name: NOD1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
NOL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.641285e-03	ci left: 9.768488e-01	ci right 9.824669e-01	k: 9798	n:10000
Cons ci ratio: 1.664326e-02	ci left: 8.400990e-01	ci right 8.542981e-01	k: 8473	n:10000
KS ci ratio: 2.486315e-02	ci left: 7.041236e-01	ci right 7.219521e-01	k: 7131	n:10000
NOL6   10000 perm   2 sec   (4772 perm/sec)   p_kst 7.131000e-01   p_cons 8.473000e-01   p_joint 9.798000e-01

Outputting figure to mutsig2_images.part000000000116/NOL6.4_3545_10000_0.7131_0.8473_0.9798.png
                gene_name: NOL6
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 46 percent done.
NOMO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.888187e-02	ci left: 4.941505e-01	ci right 5.138471e-01	k: 5040	n:10000
Cons ci ratio: 4.129592e-02	ci left: 4.640723e-01	ci right 4.837429e-01	k: 4739	n:10000
KS ci ratio: 4.425176e-02	ci left: 4.298407e-01	ci right 4.493945e-01	k: 4396	n:10000
NOMO1   10000 perm   2 sec   (4586 perm/sec)   p_kst 4.396000e-01   p_cons 4.739000e-01   p_joint 5.040000e-01

Outputting figure to mutsig2_images.part000000000116/NOMO1.4_3793_10000_0.4396_0.4739_0.504.png
                gene_name: NOMO1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 47 percent done.
NOP56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.049357e-02	ci left: 9.281291e-01	ci right 9.380168e-01	k: 9332	n:10000
KS ci ratio: 2.118833e-02	ci left: 7.655723e-01	ci right 7.820679e-01	k: 7739	n:10000
NOP56   10000 perm   2 sec   (5514 perm/sec)   p_kst 7.739000e-01   p_cons 9.332000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOP56.4_1833_10000_0.7739_0.9332_1.png
                gene_name: NOP56
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
NOS1AP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
Cons ci ratio: 9.298371e-02	ci left: 1.438386e-01	ci right 1.579654e-01	k: 1508	n:10000
KS ci ratio: 1.156144e-01	ci left: 9.710875e-02	ci right 1.091236e-01	k: 1030	n:10000
NOS1AP   10000 perm   2 sec   (5128 perm/sec)   p_kst 1.030000e-01   p_cons 1.508000e-01   p_joint 6.680000e-02

Joint ci ratio: 8.821853e-02	ci left: 8.587260e-02	ci right 9.384710e-02	k: 1796	n:20000
Cons ci ratio: 6.539360e-02	ci left: 1.472968e-01	ci right 1.573045e-01	k: 3045	n:20000
KS ci ratio: 7.920726e-02	ci left: 1.047622e-01	ci right 1.134519e-01	k: 2181	n:20000
NOS1AP   20000 perm   4 sec   (4520 perm/sec)   p_kst 1.090500e-01   p_cons 1.522500e-01   p_joint 8.980000e-02

Outputting figure to mutsig2_images.part000000000116/NOS1AP.4_1615_20000_0.10905_0.15225_0.0898.png
                gene_name: NOS1AP
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.094 

Current progress: 51 percent done.
NPAS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.368076e-02	ci left: 2.124066e-01	ci right 2.287565e-01	k: 2205	n:10000
Cons ci ratio: 1.694391e-01	ci left: 4.648153e-02	ci right 5.518251e-02	k: 507	n:10000
KS ci ratio: 2.219129e-02	ci left: 7.487731e-01	ci right 7.656768e-01	k: 7573	n:10000
NPAS3   10000 perm   2 sec   (5128 perm/sec)   p_kst 7.573000e-01   p_cons 5.070000e-02   p_joint 2.205000e-01

Joint ci ratio: 3.696224e-02	ci left: 3.532438e-01	ci right 3.665969e-01	k: 7198	n:20000
Cons ci ratio: 1.224394e-01	ci left: 4.575777e-02	ci right 5.177429e-02	k: 974	n:20000
KS ci ratio: 1.488174e-02	ci left: 7.704092e-01	ci right 7.820104e-01	k: 15525	n:20000
NPAS3   20000 perm   4 sec   (4611 perm/sec)   p_kst 7.762500e-01   p_cons 4.870000e-02   p_joint 3.599000e-01

Joint ci ratio: 3.750859e-02	ci left: 2.618675e-01	ci right 2.719110e-01	k: 8006	n:30000
Cons ci ratio: 1.002426e-01	ci left: 4.606374e-02	ci right 5.095750e-02	k: 1454	n:30000
KS ci ratio: 1.208032e-02	ci left: 7.735224e-01	ci right 7.829570e-01	k: 23348	n:30000
NPAS3   30000 perm   7 sec   (4413 perm/sec)   p_kst 7.782667e-01   p_cons 4.846667e-02   p_joint 2.668667e-01

Joint ci ratio: 3.845311e-02	ci left: 2.022442e-01	ci right 2.101985e-01	k: 8248	n:40000
Cons ci ratio: 8.683652e-02	ci left: 4.636617e-02	ci right 5.059968e-02	k: 1938	n:40000
KS ci ratio: 1.047903e-02	ci left: 7.735927e-01	ci right 7.817669e-01	k: 31108	n:40000
NPAS3   40000 perm   9 sec   (4273 perm/sec)   p_kst 7.777000e-01   p_cons 4.845000e-02   p_joint 2.062000e-01

Outputting figure to mutsig2_images.part000000000116/NPAS3.4_2905_40000_0.7777_0.04845_0.2062.png
                gene_name: NPAS3
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 53 percent done.
NPC1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.879380e-02	ci left: 1.558095e-01	ci right 1.703873e-01	k: 1630	n:10000
Cons ci ratio: 3.472863e-02	ci left: 5.504051e-01	ci right 5.699598e-01	k: 5602	n:10000
KS ci ratio: 1.102633e-01	ci left: 1.059801e-01	ci right 1.184468e-01	k: 1121	n:10000
NPC1L1   10000 perm   2 sec   (4322 perm/sec)   p_kst 1.121000e-01   p_cons 5.602000e-01   p_joint 1.630000e-01

Joint ci ratio: 5.582050e-02	ci left: 1.922491e-01	ci right 2.033389e-01	k: 3955	n:20000
Cons ci ratio: 2.559168e-02	ci left: 5.328621e-01	ci right 5.467263e-01	k: 10796	n:20000
KS ci ratio: 7.812633e-02	ci left: 1.074153e-01	ci right 1.161980e-01	k: 2235	n:20000
NPC1L1   20000 perm   5 sec   (4052 perm/sec)   p_kst 1.117500e-01   p_cons 5.398000e-01   p_joint 1.977500e-01

Outputting figure to mutsig2_images.part000000000116/NPC1L1.4_4160_20000_0.11175_0.5398_0.19775.png
                gene_name: NPC1L1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 54 percent done.
NPFFR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.711691e-02	ci left: 3.109600e-01	ci right 3.293449e-01	k: 3201	n:10000
Cons ci ratio: 5.223299e-02	ci left: 3.507829e-01	ci right 3.696986e-01	k: 3602	n:10000
KS ci ratio: 4.916000e-02	ci left: 3.790301e-01	ci right 3.982348e-01	k: 3886	n:10000
NPFFR2   10000 perm   2 sec   (5324 perm/sec)   p_kst 3.886000e-01   p_cons 3.602000e-01   p_joint 3.201000e-01

Outputting figure to mutsig2_images.part000000000116/NPFFR2.4_1591_10000_0.3886_0.3602_0.3201.png
                gene_name: NPFFR2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 56 percent done.
NPHP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.997367e-03	ci left: 9.341299e-01	ci right 9.436124e-01	k: 9390	n:10000
KS ci ratio: 3.235097e-02	ci left: 5.851015e-01	ci right 6.044433e-01	k: 5948	n:10000
NPHP3   10000 perm   2 sec   (4554 perm/sec)   p_kst 5.948000e-01   p_cons 9.390000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NPHP3.4_4101_10000_0.5948_0.939_1.png
                gene_name: NPHP3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
NOP58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.710561e-02	ci left: 6.672307e-01	ci right 6.856665e-01	k: 6765	n:10000
Cons ci ratio: 8.683729e-03	ci left: 9.489806e-01	ci right 9.573529e-01	k: 9533	n:10000
KS ci ratio: 4.105657e-02	ci left: 4.669687e-01	ci right 4.866448e-01	k: 4768	n:10000
NOP58   10000 perm   2 sec   (5165 perm/sec)   p_kst 4.768000e-01   p_cons 9.533000e-01   p_joint 6.765000e-01

Outputting figure to mutsig2_images.part000000000116/NOP58.3_1650_10000_0.4768_0.9533_0.6765.png
                gene_name: NOP58
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 60 percent done.
NOVA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.172700e-01	ci left: 9.457666e-02	ci right 1.064572e-01	k: 1004	n:10000
Cons ci ratio: 4.866711e-02	ci left: 3.838077e-01	ci right 4.030544e-01	k: 3934	n:10000
KS ci ratio: 1.424392e-01	ci left: 6.536500e-02	ci right 7.548697e-02	k: 703	n:10000
NOVA2   10000 perm   2 sec   (5943 perm/sec)   p_kst 7.030000e-02   p_cons 3.934000e-01   p_joint 1.004000e-01

Joint ci ratio: 6.278765e-02	ci left: 1.579546e-01	ci right 1.682436e-01	k: 3261	n:20000
Cons ci ratio: 3.556436e-02	ci left: 3.711236e-01	ci right 3.846119e-01	k: 7557	n:20000
KS ci ratio: 1.002630e-01	ci left: 6.742937e-02	ci right 7.459595e-02	k: 1419	n:20000
NOVA2   20000 perm   4 sec   (5186 perm/sec)   p_kst 7.095000e-02   p_cons 3.778500e-01   p_joint 1.630500e-01

Joint ci ratio: 5.344915e-02	ci left: 1.479545e-01	ci right 1.561130e-01	k: 4560	n:30000
Cons ci ratio: 2.807416e-02	ci left: 3.883315e-01	ci right 3.994224e-01	k: 11816	n:30000
KS ci ratio: 8.188564e-02	ci left: 6.805338e-02	ci right 7.389670e-02	k: 2128	n:30000
NOVA2   30000 perm   6 sec   (4942 perm/sec)   p_kst 7.093333e-02   p_cons 3.938667e-01   p_joint 1.520000e-01

Outputting figure to mutsig2_images.part000000000116/NOVA2.3_1495_30000_0.070933_0.39387_0.152.png
                gene_name: NOVA2
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 61 percent done.
NPBWR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.659180e-02	ci left: 8.409140e-01	ci right 8.550827e-01	k: 8481	n:10000
Cons ci ratio: 3.961964e-02	ci left: 4.847535e-01	ci right 5.044496e-01	k: 4946	n:10000
KS ci ratio: 8.952882e-03	ci left: 9.460656e-01	ci right 9.546696e-01	k: 9505	n:10000
NPBWR1   10000 perm   2 sec   (6103 perm/sec)   p_kst 9.505000e-01   p_cons 4.946000e-01   p_joint 8.481000e-01

Outputting figure to mutsig2_images.part000000000116/NPBWR1.3_991_10000_0.9505_0.4946_0.8481.png
                gene_name: NPBWR1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 63 percent done.
NPHP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.643716e-02	ci left: 4.063151e-01	ci right 4.257338e-01	k: 4160	n:10000
Cons ci ratio: 1.254905e-02	ci left: 9.012412e-01	ci right 9.127205e-01	k: 9071	n:10000
KS ci ratio: 6.528310e-02	ci left: 2.562705e-01	ci right 2.736666e-01	k: 2649	n:10000
NPHP4   10000 perm   2 sec   (4311 perm/sec)   p_kst 2.649000e-01   p_cons 9.071000e-01   p_joint 4.160000e-01

Outputting figure to mutsig2_images.part000000000116/NPHP4.3_4397_10000_0.2649_0.9071_0.416.png
                gene_name: NPHP4
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 65 percent done.
NPHS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.353332e-01	ci left: 7.213925e-02	ci right 8.270848e-02	k: 773	n:10000
Cons ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
KS ci ratio: 7.383106e-02	ci left: 2.117161e-01	ci right 2.280474e-01	k: 2198	n:10000
NPHS2   10000 perm   2 sec   (5910 perm/sec)   p_kst 2.198000e-01   p_cons 1.090000e-02   p_joint 7.730000e-02

Joint ci ratio: 1.340536e-01	ci left: 3.824541e-02	ci right 4.378904e-02	k: 819	n:20000
Cons ci ratio: 2.646529e-01	ci left: 9.413987e-03	ci right 1.233084e-02	k: 216	n:20000
KS ci ratio: 5.242865e-02	ci left: 2.126902e-01	ci right 2.241917e-01	k: 4368	n:20000
NPHS2   20000 perm   4 sec   (5114 perm/sec)   p_kst 2.184000e-01   p_cons 1.080000e-02   p_joint 4.095000e-02

Joint ci ratio: 1.566989e-01	ci left: 1.883025e-02	ci right 2.206356e-02	k: 612	n:30000
Cons ci ratio: 2.229420e-01	ci left: 9.062469e-03	ci right 1.136720e-02	k: 305	n:30000
KS ci ratio: 4.311323e-02	ci left: 2.113544e-01	ci right 2.207007e-01	k: 6480	n:30000
NPHS2   30000 perm   6 sec   (4787 perm/sec)   p_kst 2.160000e-01   p_cons 1.016667e-02   p_joint 2.040000e-02

Joint ci ratio: 1.168279e-01	ci left: 2.577352e-02	ci right 2.899558e-02	k: 1094	n:40000
Cons ci ratio: 2.158859e-01	ci left: 7.292263e-03	ci right 9.080242e-03	k: 326	n:40000
KS ci ratio: 3.728586e-02	ci left: 2.124472e-01	ci right 2.205440e-01	k: 8659	n:40000
NPHS2   40000 perm   9 sec   (4636 perm/sec)   p_kst 2.164750e-01   p_cons 8.150000e-03   p_joint 2.735000e-02

Joint ci ratio: 1.123704e-01	ci left: 2.242330e-02	ci right 2.511238e-02	k: 1187	n:50000
Cons ci ratio: 1.923253e-01	ci left: 7.447236e-03	ci right 9.050645e-03	k: 411	n:50000
KS ci ratio: 3.347190e-02	ci left: 2.116442e-01	ci right 2.188689e-01	k: 10762	n:50000
NPHS2   50000 perm   11 sec   (4525 perm/sec)   p_kst 2.152400e-01   p_cons 8.220000e-03   p_joint 2.374000e-02

Joint ci ratio: 9.892996e-02	ci left: 2.423705e-02	ci right 2.677580e-02	k: 1529	n:60000
Cons ci ratio: 1.758197e-01	ci left: 7.493942e-03	ci right 8.954226e-03	k: 492	n:60000
KS ci ratio: 3.060477e-02	ci left: 2.114200e-01	ci right 2.180076e-01	k: 12882	n:60000
NPHS2   60000 perm   14 sec   (4394 perm/sec)   p_kst 2.147000e-01   p_cons 8.200000e-03   p_joint 2.548333e-02

Joint ci ratio: 9.433920e-02	ci left: 2.293466e-02	ci right 2.521931e-02	k: 1684	n:70000
Cons ci ratio: 1.633753e-01	ci left: 7.490414e-03	ci right 8.836549e-03	k: 570	n:70000
KS ci ratio: 2.837560e-02	ci left: 2.111797e-01	ci right 2.172726e-01	k: 14995	n:70000
NPHS2   70000 perm   16 sec   (4303 perm/sec)   p_kst 2.142143e-01   p_cons 8.142857e-03   p_joint 2.405714e-02

Joint ci ratio: 7.759844e-02	ci left: 2.971165e-02	ci right 3.212252e-02	k: 2472	n:80000
Cons ci ratio: 1.539663e-01	ci left: 7.418376e-03	ci right 8.667696e-03	k: 642	n:80000
KS ci ratio: 2.650879e-02	ci left: 2.118090e-01	ci right 2.175117e-01	k: 17172	n:80000
NPHS2   80000 perm   19 sec   (4218 perm/sec)   p_kst 2.146500e-01   p_cons 8.025000e-03   p_joint 3.090000e-02

Joint ci ratio: 7.509199e-02	ci left: 2.828419e-02	ci right 3.050183e-02	k: 2644	n:90000
Cons ci ratio: 1.450977e-01	ci left: 7.460470e-03	ci right 8.638236e-03	k: 723	n:90000
KS ci ratio: 2.496939e-02	ci left: 2.122865e-01	ci right 2.176652e-01	k: 19347	n:90000
NPHS2   90000 perm   22 sec   (4139 perm/sec)   p_kst 2.149667e-01   p_cons 8.033333e-03   p_joint 2.937778e-02

Joint ci ratio: 7.789411e-02	ci left: 2.373702e-02	ci right 2.567069e-02	k: 2469	n:100000
Cons ci ratio: 1.367502e-01	ci left: 7.592392e-03	ci right 8.716417e-03	k: 814	n:100000
KS ci ratio: 2.371389e-02	ci left: 2.120588e-01	ci right 2.171578e-01	k: 21460	n:100000
NPHS2   100000 perm   25 sec   (4058 perm/sec)   p_kst 2.146000e-01   p_cons 8.140000e-03   p_joint 2.469000e-02

Joint ci ratio: 7.467881e-02	ci left: 2.352302e-02	ci right 2.535672e-02	k: 2687	n:110000
Cons ci ratio: 1.313124e-01	ci left: 7.508397e-03	ci right 8.572333e-03	k: 883	n:110000
KS ci ratio: 2.262074e-02	ci left: 2.120230e-01	ci right 2.168830e-01	k: 23589	n:110000
NPHS2   110000 perm   28 sec   (3984 perm/sec)   p_kst 2.144455e-01   p_cons 8.027273e-03   p_joint 2.442727e-02

Joint ci ratio: 7.026123e-02	ci left: 2.439426e-02	ci right 2.617879e-02	k: 3033	n:120000
Cons ci ratio: 1.254186e-01	ci left: 7.568305e-03	ci right 8.589016e-03	k: 968	n:120000
KS ci ratio: 2.163660e-02	ci left: 2.124542e-01	ci right 2.171096e-01	k: 25773	n:120000
NPHS2   120000 perm   31 sec   (3904 perm/sec)   p_kst 2.147750e-01   p_cons 8.066667e-03   p_joint 2.527500e-02

Joint ci ratio: 6.748201e-02	ci left: 2.444555e-02	ci right 2.616033e-02	k: 3288	n:130000
Cons ci ratio: 1.204260e-01	ci left: 7.597512e-03	ci right 8.578467e-03	k: 1050	n:130000
KS ci ratio: 2.079339e-02	ci left: 2.124551e-01	ci right 2.169268e-01	k: 27909	n:130000
NPHS2   130000 perm   34 sec   (3838 perm/sec)   p_kst 2.146846e-01   p_cons 8.076923e-03   p_joint 2.529231e-02

Joint ci ratio: 6.510278e-02	ci left: 2.442042e-02	ci right 2.607075e-02	k: 3533	n:140000
Cons ci ratio: 1.155242e-01	ci left: 7.685675e-03	ci right 8.634865e-03	k: 1141	n:140000
KS ci ratio: 2.002299e-02	ci left: 2.127721e-01	ci right 2.170826e-01	k: 30089	n:140000
NPHS2   140000 perm   37 sec   (3772 perm/sec)   p_kst 2.149214e-01   p_cons 8.150000e-03   p_joint 2.523571e-02

Joint ci ratio: 6.289893e-02	ci left: 2.444552e-02	ci right 2.603957e-02	k: 3785	n:150000
Cons ci ratio: 1.115873e-01	ci left: 7.704442e-03	ci right 8.621389e-03	k: 1223	n:150000
KS ci ratio: 1.933804e-02	ci left: 2.129498e-01	ci right 2.171146e-01	k: 32254	n:150000
NPHS2   150000 perm   41 sec   (3696 perm/sec)   p_kst 2.150267e-01   p_cons 8.153333e-03   p_joint 2.523333e-02

Joint ci ratio: 6.078131e-02	ci left: 2.456682e-02	ci right 2.611295e-02	k: 4053	n:160000
Cons ci ratio: 1.079856e-01	ci left: 7.727426e-03	ci right 8.615535e-03	k: 1306	n:160000
KS ci ratio: 1.874874e-02	ci left: 2.125717e-01	ci right 2.166011e-01	k: 34333	n:160000
NPHS2   160000 perm   44 sec   (3637 perm/sec)   p_kst 2.145813e-01   p_cons 8.162500e-03   p_joint 2.533125e-02

Joint ci ratio: 5.908186e-02	ci left: 2.449491e-02	ci right 2.599193e-02	k: 4290	n:170000
Cons ci ratio: 1.048638e-01	ci left: 7.725207e-03	ci right 8.585810e-03	k: 1385	n:170000
KS ci ratio: 1.817750e-02	ci left: 2.128438e-01	ci right 2.167541e-01	k: 36515	n:170000
NPHS2   170000 perm   47 sec   (3580 perm/sec)   p_kst 2.147941e-01   p_cons 8.147059e-03   p_joint 2.523529e-02

Joint ci ratio: 5.741345e-02	ci left: 2.451917e-02	ci right 2.597395e-02	k: 4543	n:180000
Cons ci ratio: 1.018579e-01	ci left: 7.745224e-03	ci right 8.581844e-03	k: 1468	n:180000
KS ci ratio: 1.768837e-02	ci left: 2.124616e-01	ci right 2.162587e-01	k: 38584	n:180000
NPHS2   180000 perm   51 sec   (3523 perm/sec)   p_kst 2.143556e-01   p_cons 8.155556e-03   p_joint 2.523889e-02

Joint ci ratio: 5.583109e-02	ci left: 2.458294e-02	ci right 2.600001e-02	k: 4804	n:190000
Cons ci ratio: 9.842725e-02	ci left: 7.871267e-03	ci right 8.691211e-03	k: 1572	n:190000
KS ci ratio: 1.720386e-02	ci left: 2.127610e-01	ci right 2.164583e-01	k: 40775	n:190000
NPHS2   190000 perm   55 sec   (3469 perm/sec)   p_kst 2.146053e-01   p_cons 8.273684e-03   p_joint 2.528421e-02

Outputting figure to mutsig2_images.part000000000116/NPHS2.3_1184_190000_0.21461_0.0082737_0.025284.png
                gene_name: NPHS2
               theta_stop: 0.098 
                    nperm: 190000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.0083 
      ci_cons_bounds_left: 0.0079 
     ci_cons_bounds_right: 0.0087 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.026 

Current progress: 67 percent done.
NPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.061291e-01	ci left: 3.129396e-02	ci right 3.858023e-02	k: 348	n:10000
Cons ci ratio: 1.280039e-02	ci left: 8.977499e-01	ci right 9.094138e-01	k: 9037	n:10000
KS ci ratio: 3.981388e-01	ci left: 7.692674e-03	ci right 1.160097e-02	k: 95	n:10000
NPL   10000 perm   2 sec   (5372 perm/sec)   p_kst 9.500000e-03   p_cons 9.037000e-01   p_joint 3.480000e-02

Joint ci ratio: 1.182888e-01	ci left: 4.896323e-02	ci right 5.516782e-02	k: 1040	n:20000
Cons ci ratio: 9.396619e-03	ci left: 8.926537e-01	ci right 9.011306e-01	k: 17939	n:20000
KS ci ratio: 2.764887e-01	ci left: 8.574499e-03	ci right 1.137073e-02	k: 198	n:20000
NPL   20000 perm   4 sec   (4920 perm/sec)   p_kst 9.900000e-03   p_cons 8.969500e-01   p_joint 5.200000e-02

Joint ci ratio: 1.256285e-01	ci left: 2.945537e-02	ci right 3.343605e-02	k: 942	n:30000
Cons ci ratio: 7.669875e-03	ci left: 8.935052e-01	ci right 9.004177e-01	k: 26910	n:30000
KS ci ratio: 2.225749e-01	ci left: 9.093958e-03	ci right 1.140237e-02	k: 306	n:30000
NPL   30000 perm   6 sec   (4795 perm/sec)   p_kst 1.020000e-02   p_cons 8.970000e-01   p_joint 3.140000e-02

Joint ci ratio: 1.515535e-01	ci left: 1.520211e-02	ci right 1.771879e-02	k: 657	n:40000
Cons ci ratio: 6.644847e-03	ci left: 8.939039e-01	ci right 8.998883e-01	k: 35877	n:40000
KS ci ratio: 1.942806e-01	ci left: 9.095716e-03	ci right 1.107638e-02	k: 402	n:40000
NPL   40000 perm   9 sec   (4647 perm/sec)   p_kst 1.005000e-02   p_cons 8.969250e-01   p_joint 1.642500e-02

Joint ci ratio: 1.195214e-01	ci left: 1.979990e-02	ci right 2.233613e-02	k: 1052	n:50000
Cons ci ratio: 5.745402e-03	ci left: 9.003927e-01	ci right 9.056004e-01	k: 45151	n:50000
KS ci ratio: 1.742514e-01	ci left: 9.146410e-03	ci right 1.091117e-02	k: 500	n:50000
NPL   50000 perm   11 sec   (4498 perm/sec)   p_kst 1.000000e-02   p_cons 9.030200e-01   p_joint 2.104000e-02

Joint ci ratio: 1.044954e-01	ci left: 2.171788e-02	ci right 2.412857e-02	k: 1374	n:60000
Cons ci ratio: 5.270764e-03	ci left: 8.997448e-01	ci right 9.045162e-01	k: 54129	n:60000
KS ci ratio: 1.577754e-01	ci left: 9.379414e-03	ci right 1.100182e-02	k: 610	n:60000
NPL   60000 perm   14 sec   (4427 perm/sec)   p_kst 1.016667e-02   p_cons 9.021500e-01   p_joint 2.290000e-02

Joint ci ratio: 1.023412e-01	ci left: 1.947696e-02	ci right 2.159161e-02	k: 1436	n:70000
Cons ci ratio: 4.863739e-03	ci left: 9.005095e-01	ci right 9.049142e-01	k: 63191	n:70000
KS ci ratio: 1.481685e-01	ci left: 9.166041e-03	ci right 1.064644e-02	k: 692	n:70000
NPL   70000 perm   16 sec   (4369 perm/sec)   p_kst 9.885714e-03   p_cons 9.027286e-01   p_joint 2.051429e-02

Joint ci ratio: 9.547324e-02	ci left: 1.965130e-02	ci right 2.163367e-02	k: 1650	n:80000
Cons ci ratio: 4.561002e-03	ci left: 9.002091e-01	ci right 9.043367e-01	k: 72183	n:80000
KS ci ratio: 1.376369e-01	ci left: 9.346232e-03	ci right 1.073964e-02	k: 802	n:80000
NPL   80000 perm   19 sec   (4307 perm/sec)   p_kst 1.002500e-02   p_cons 9.022875e-01   p_joint 2.062500e-02

Joint ci ratio: 9.254752e-02	ci left: 1.863916e-02	ci right 2.045866e-02	k: 1758	n:90000
Cons ci ratio: 4.290613e-03	ci left: 9.007228e-01	ci right 9.046068e-01	k: 81241	n:90000
KS ci ratio: 1.298653e-01	ci left: 9.370982e-03	ci right 1.068311e-02	k: 901	n:90000
NPL   90000 perm   21 sec   (4243 perm/sec)   p_kst 1.001111e-02   p_cons 9.026778e-01   p_joint 1.953333e-02

Joint ci ratio: 8.859793e-02	ci left: 1.834866e-02	ci right 2.005939e-02	k: 1919	n:100000
Cons ci ratio: 4.072683e-03	ci left: 9.007254e-01	ci right 9.044112e-01	k: 90258	n:100000
KS ci ratio: 1.228439e-01	ci left: 9.460421e-03	ci right 1.070824e-02	k: 1007	n:100000
NPL   100000 perm   24 sec   (4173 perm/sec)   p_kst 1.007000e-02   p_cons 9.025800e-01   p_joint 1.919000e-02

Joint ci ratio: 7.763083e-02	ci left: 2.177435e-02	ci right 2.354185e-02	k: 2491	n:110000
Cons ci ratio: 3.875066e-03	ci left: 9.011809e-01	ci right 9.046888e-01	k: 99324	n:110000
KS ci ratio: 1.170632e-01	ci left: 9.499852e-03	ci right 1.068983e-02	k: 1109	n:110000
NPL   110000 perm   27 sec   (4110 perm/sec)   p_kst 1.008182e-02   p_cons 9.029455e-01   p_joint 2.264545e-02

Joint ci ratio: 8.039955e-02	ci left: 1.864342e-02	ci right 2.021325e-02	k: 2330	n:120000
Cons ci ratio: 3.711576e-03	ci left: 9.011856e-01	ci right 9.045449e-01	k: 108345	n:120000
KS ci ratio: 1.118422e-01	ci left: 9.566267e-03	ci right 1.070759e-02	k: 1215	n:120000
NPL   120000 perm   30 sec   (3998 perm/sec)   p_kst 1.012500e-02   p_cons 9.028750e-01   p_joint 1.941667e-02

Joint ci ratio: 7.714034e-02	ci left: 1.872505e-02	ci right 2.023496e-02	k: 2531	n:130000
Cons ci ratio: 3.565608e-03	ci left: 9.012699e-01	ci right 9.044968e-01	k: 117376	n:130000
KS ci ratio: 1.081339e-01	ci left: 9.466234e-03	ci right 1.055579e-02	k: 1300	n:130000
NPL   130000 perm   33 sec   (3916 perm/sec)   p_kst 1.000000e-02   p_cons 9.028923e-01   p_joint 1.946923e-02

Joint ci ratio: 7.835332e-02	ci left: 1.687561e-02	ci right 1.825876e-02	k: 2458	n:140000
Cons ci ratio: 3.437988e-03	ci left: 9.012220e-01	ci right 9.043328e-01	k: 126390	n:140000
KS ci ratio: 1.042033e-01	ci left: 9.485400e-03	ci right 1.053504e-02	k: 1400	n:140000
NPL   140000 perm   36 sec   (3838 perm/sec)   p_kst 1.000000e-02   p_cons 9.027857e-01   p_joint 1.755714e-02

Joint ci ratio: 7.592627e-02	ci left: 1.679664e-02	ci right 1.812877e-02	k: 2618	n:150000
Cons ci ratio: 3.321893e-03	ci left: 9.012495e-01	ci right 9.042549e-01	k: 135414	n:150000
KS ci ratio: 1.008422e-01	ci left: 9.470130e-03	ci right 1.048228e-02	k: 1495	n:150000
NPL   150000 perm   40 sec   (3767 perm/sec)   p_kst 9.966667e-03   p_cons 9.027600e-01   p_joint 1.745333e-02

Joint ci ratio: 7.365766e-02	ci left: 1.675266e-02	ci right 1.803991e-02	k: 2782	n:160000
Cons ci ratio: 3.218992e-03	ci left: 9.011556e-01	ci right 9.040673e-01	k: 144419	n:160000
KS ci ratio: 9.791105e-02	ci left: 9.432853e-03	ci right 1.041003e-02	k: 1586	n:160000
NPL   160000 perm   43 sec   (3707 perm/sec)   p_kst 9.912500e-03   p_cons 9.026188e-01   p_joint 1.738750e-02

Outputting figure to mutsig2_images.part000000000116/NPL.3_1007_160000_0.0099125_0.90262_0.017388.png
                gene_name: NPL
               theta_stop: 0.098 
                    nperm: 160000 
                     p_ks: 0.0099 
        ci_ks_bounds_left: 0.0094 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.018 

Current progress: 68 percent done.
NPLOC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.367280e-02	ci left: 4.363242e-01	ci right 4.559072e-01	k: 4461	n:10000
Cons ci ratio: 1.221968e-01	ci left: 8.757121e-02	ci right 9.906697e-02	k: 932	n:10000
KS ci ratio: 4.598151e-02	ci left: 4.110981e-01	ci right 4.305480e-01	k: 4208	n:10000
NPLOC4   10000 perm   2 sec   (5792 perm/sec)   p_kst 4.208000e-01   p_cons 9.320000e-02   p_joint 4.461000e-01

Joint ci ratio: 3.178403e-02	ci left: 4.250703e-01	ci right 4.388495e-01	k: 8639	n:20000
Cons ci ratio: 8.567560e-02	ci left: 9.067620e-02	ci right 9.884206e-02	k: 1894	n:20000
KS ci ratio: 3.225473e-02	ci left: 4.178858e-01	ci right 4.316361e-01	k: 8495	n:20000
NPLOC4   20000 perm   4 sec   (5102 perm/sec)   p_kst 4.247500e-01   p_cons 9.470000e-02   p_joint 4.319500e-01

Outputting figure to mutsig2_images.part000000000116/NPLOC4.3_1895_20000_0.42475_0.0947_0.43195.png
                gene_name: NPLOC4
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 70 percent done.
NPM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.377898e-02	ci left: 4.351271e-01	ci right 4.547050e-01	k: 4449	n:10000
KS ci ratio: 1.158000e-02	ci left: 9.143035e-01	ci right 9.250505e-01	k: 9198	n:10000
NPM3   10000 perm   2 sec   (6475 perm/sec)   p_kst 9.198000e-01   p_cons 4.449000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NPM3.3_557_10000_0.9198_0.4449_1.png
                gene_name: NPM3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
NPR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.138976e-01	ci left: 9.983694e-02	ci right 1.119937e-01	k: 1058	n:10000
Cons ci ratio: 1.162440e-01	ci left: 9.613473e-02	ci right 1.080982e-01	k: 1020	n:10000
KS ci ratio: 5.811568e-02	ci left: 3.035202e-01	ci right 3.217891e-01	k: 3126	n:10000
NPR3   10000 perm   2 sec   (5568 perm/sec)   p_kst 3.126000e-01   p_cons 1.020000e-01   p_joint 1.058000e-01

Joint ci ratio: 6.827406e-02	ci left: 1.366477e-01	ci right 1.463568e-01	k: 2829	n:20000
Cons ci ratio: 8.222091e-02	ci left: 9.783865e-02	ci right 1.062774e-01	k: 2040	n:20000
KS ci ratio: 4.150394e-02	ci left: 3.020027e-01	ci right 3.148531e-01	k: 6168	n:20000
NPR3   20000 perm   4 sec   (4872 perm/sec)   p_kst 3.084000e-01   p_cons 1.020000e-01   p_joint 1.414500e-01

Outputting figure to mutsig2_images.part000000000116/NPR3.3_1655_20000_0.3084_0.102_0.14145.png
                gene_name: NPR3
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 74 percent done.
NPRL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.592830e-02	ci left: 5.335757e-01	ci right 5.531990e-01	k: 5434	n:10000
Cons ci ratio: 7.227413e-02	ci left: 2.190177e-01	ci right 2.355415e-01	k: 2272	n:10000
KS ci ratio: 1.534925e-02	ci left: 8.602896e-01	ci right 8.736958e-01	k: 8671	n:10000
NPRL3   10000 perm   2 sec   (5872 perm/sec)   p_kst 8.671000e-01   p_cons 2.272000e-01   p_joint 5.434000e-01

Outputting figure to mutsig2_images.part000000000116/NPRL3.3_1761_10000_0.8671_0.2272_0.5434.png
                gene_name: NPRL3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 75 percent done.
NOL10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.919072e-02	ci left: 1.889483e-01	ci right 2.046288e-01	k: 1967	n:10000
Cons ci ratio: 4.731777e-02	ci left: 3.972498e-01	ci right 4.166044e-01	k: 4069	n:10000
KS ci ratio: 1.137175e-01	ci left: 1.001293e-01	ci right 1.123011e-01	k: 1061	n:10000
NOL10   10000 perm   2 sec   (5709 perm/sec)   p_kst 1.061000e-01   p_cons 4.069000e-01   p_joint 1.967000e-01

Joint ci ratio: 8.464332e-02	ci left: 9.273591e-02	ci right 1.009817e-01	k: 1936	n:20000
Cons ci ratio: 3.333397e-02	ci left: 4.019255e-01	ci right 4.156010e-01	k: 8175	n:20000
KS ci ratio: 8.253650e-02	ci left: 9.715154e-02	ci right 1.055648e-01	k: 2026	n:20000
NOL10   20000 perm   4 sec   (4991 perm/sec)   p_kst 1.013000e-01   p_cons 4.087500e-01   p_joint 9.680000e-02

Outputting figure to mutsig2_images.part000000000116/NOL10.2_2151_20000_0.1013_0.40875_0.0968.png
                gene_name: NOL10
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.10 

Current progress: 77 percent done.
NOL11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.919359e-02	ci left: 6.337201e-01	ci right 6.525965e-01	k: 6432	n:10000
KS ci ratio: 3.532443e-02	ci left: 5.419890e-01	ci right 5.615808e-01	k: 5518	n:10000
NOL11   10000 perm   2 sec   (5736 perm/sec)   p_kst 5.518000e-01   p_cons 6.432000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOL11.2_2232_10000_0.5518_0.6432_1.png
                gene_name: NOL11
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
NOL7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
Cons ci ratio: 8.403543e-02	ci left: 1.711374e-01	ci right 1.862502e-01	k: 1786	n:10000
KS ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
NOL7   10000 perm   1 sec   (6853 perm/sec)   p_kst 1.700000e-03   p_cons 1.786000e-01   p_joint 1.300000e-03

Joint ci ratio: 2.892375e-01	ci left: 7.784307e-03	ci right 1.046133e-02	k: 181	n:20000
Cons ci ratio: 6.007885e-02	ci left: 1.702012e-01	ci right 1.807934e-01	k: 3509	n:20000
KS ci ratio: 7.151360e-01	ci left: 9.712961e-04	ci right 2.081783e-03	k: 29	n:20000
NOL7   20000 perm   3 sec   (5918 perm/sec)   p_kst 1.450000e-03   p_cons 1.754500e-01   p_joint 9.050000e-03

Joint ci ratio: 3.171422e-01	ci left: 4.264115e-03	ci right 5.900658e-03	k: 151	n:30000
Cons ci ratio: 4.880166e-02	ci left: 1.726628e-01	ci right 1.813331e-01	k: 5309	n:30000
KS ci ratio: 6.354945e-01	ci left: 8.685245e-04	ci right 1.699591e-03	k: 37	n:30000
NOL7   30000 perm   5 sec   (5616 perm/sec)   p_kst 1.233333e-03   p_cons 1.769667e-01   p_joint 5.033333e-03

Joint ci ratio: 4.552634e-01	ci left: 1.430773e-03	ci right 2.294124e-03	k: 73	n:40000
Cons ci ratio: 4.049827e-02	ci left: 1.859176e-01	ci right 1.936275e-01	k: 7590	n:40000
KS ci ratio: 5.540182e-01	ci left: 9.063949e-04	ci right 1.619195e-03	k: 49	n:40000
NOL7   40000 perm   7 sec   (5403 perm/sec)   p_kst 1.225000e-03   p_cons 1.897500e-01   p_joint 1.825000e-03

Joint ci ratio: 7.038275e-01	ci left: 4.048529e-04	ci right 8.564274e-04	k: 30	n:50000
Cons ci ratio: 3.617047e-02	ci left: 1.867681e-01	ci right 1.936679e-01	k: 9510	n:50000
KS ci ratio: 5.100343e-01	ci left: 8.809508e-04	ci right 1.499314e-03	k: 58	n:50000
NOL7   50000 perm   10 sec   (5236 perm/sec)   p_kst 1.160000e-03   p_cons 1.902000e-01   p_joint 6.000000e-04

Joint ci ratio: 6.624021e-01	ci left: 3.924641e-04	ci right 7.917707e-04	k: 34	n:60000
Cons ci ratio: 3.295697e-02	ci left: 1.876461e-01	ci right 1.939505e-01	k: 11447	n:60000
KS ci ratio: 4.554059e-01	ci left: 9.537900e-04	ci right 1.529536e-03	k: 73	n:60000
NOL7   60000 perm   12 sec   (5089 perm/sec)   p_kst 1.216667e-03   p_cons 1.907833e-01   p_joint 5.666667e-04

Joint ci ratio: 6.196249e-01	ci left: 3.962121e-04	ci right 7.615547e-04	k: 39	n:70000
Cons ci ratio: 3.055466e-02	ci left: 1.874546e-01	ci right 1.932853e-01	k: 13325	n:70000
KS ci ratio: 4.300177e-01	ci left: 9.317770e-04	ci right 1.453846e-03	k: 82	n:70000
NOL7   70000 perm   14 sec   (4947 perm/sec)   p_kst 1.171429e-03   p_cons 1.903571e-01   p_joint 5.571429e-04

Joint ci ratio: 4.200369e-01	ci left: 8.599484e-04	ci right 1.327449e-03	k: 86	n:80000
Cons ci ratio: 2.855779e-02	ci left: 1.878957e-01	ci right 1.933518e-01	k: 15249	n:80000
KS ci ratio: 4.019421e-01	ci left: 9.496208e-04	ci right 1.437713e-03	k: 94	n:80000
NOL7   80000 perm   17 sec   (4815 perm/sec)   p_kst 1.175000e-03   p_cons 1.906125e-01   p_joint 1.075000e-03

Joint ci ratio: 3.898335e-01	ci left: 9.041330e-04	ci right 1.351246e-03	k: 100	n:90000
Cons ci ratio: 2.695489e-02	ci left: 1.877068e-01	ci right 1.928465e-01	k: 17124	n:90000
KS ci ratio: 3.752384e-01	ci left: 9.844840e-04	ci right 1.448628e-03	k: 108	n:90000
NOL7   90000 perm   19 sec   (4703 perm/sec)   p_kst 1.200000e-03   p_cons 1.902667e-01   p_joint 1.111111e-03

Joint ci ratio: 4.823570e-01	ci left: 5.016910e-04	ci right 8.284044e-04	k: 65	n:100000
Cons ci ratio: 2.554495e-02	ci left: 1.881597e-01	ci right 1.930383e-01	k: 19059	n:100000
KS ci ratio: 3.489995e-01	ci left: 1.040593e-03	ci right 1.489140e-03	k: 125	n:100000
NOL7   100000 perm   22 sec   (4591 perm/sec)   p_kst 1.250000e-03   p_cons 1.905900e-01   p_joint 6.500000e-04

Joint ci ratio: 2.864137e-01	ci left: 1.456792e-03	ci right 1.951893e-03	k: 186	n:110000
Cons ci ratio: 2.435760e-02	ci left: 1.882554e-01	ci right 1.929064e-01	k: 20963	n:110000
KS ci ratio: 3.287452e-01	ci left: 1.079085e-03	ci right 1.511535e-03	k: 141	n:110000
NOL7   110000 perm   25 sec   (4484 perm/sec)   p_kst 1.281818e-03   p_cons 1.905727e-01   p_joint 1.690909e-03

Joint ci ratio: 2.927747e-01	ci left: 1.273549e-03	ci right 1.717769e-03	k: 178	n:120000
Cons ci ratio: 2.334448e-02	ci left: 1.880409e-01	ci right 1.924907e-01	k: 22831	n:120000
KS ci ratio: 3.116518e-01	ci left: 1.111789e-03	ci right 1.529576e-03	k: 157	n:120000
NOL7   120000 perm   27 sec   (4394 perm/sec)   p_kst 1.308333e-03   p_cons 1.902583e-01   p_joint 1.483333e-03

Joint ci ratio: 5.146044e-01	ci left: 3.321029e-04	ci right 5.680410e-04	k: 57	n:130000
Cons ci ratio: 2.333169e-02	ci left: 1.763145e-01	ci right 1.804844e-01	k: 23191	n:130000
KS ci ratio: 2.961235e-01	ci left: 1.147075e-03	ci right 1.552616e-03	k: 174	n:130000
NOL7   130000 perm   30 sec   (4309 perm/sec)   p_kst 1.338462e-03   p_cons 1.783923e-01   p_joint 4.384615e-04

Joint ci ratio: 2.544148e-01	ci left: 1.477638e-03	ci right 1.914844e-03	k: 236	n:140000
Cons ci ratio: 2.245946e-02	ci left: 1.766963e-01	ci right 1.807170e-01	k: 25018	n:140000
KS ci ratio: 2.895843e-01	ci left: 1.118085e-03	ci right 1.503047e-03	k: 182	n:140000
NOL7   140000 perm   33 sec   (4233 perm/sec)   p_kst 1.300000e-03   p_cons 1.787000e-01   p_joint 1.685714e-03

Joint ci ratio: 2.538934e-01	ci left: 1.385362e-03	ci right 1.794291e-03	k: 237	n:150000
Cons ci ratio: 2.167087e-02	ci left: 1.771293e-01	ci right 1.810165e-01	k: 26860	n:150000
KS ci ratio: 2.827196e-01	ci left: 1.099239e-03	ci right 1.467141e-03	k: 191	n:150000
NOL7   150000 perm   36 sec   (4158 perm/sec)   p_kst 1.273333e-03   p_cons 1.790667e-01   p_joint 1.580000e-03

Joint ci ratio: 1.626141e-01	ci left: 3.324429e-03	ci right 3.918782e-03	k: 578	n:160000
Cons ci ratio: 2.097771e-02	ci left: 1.772612e-01	ci right 1.810254e-01	k: 28662	n:160000
KS ci ratio: 2.729426e-01	ci left: 1.111943e-03	ci right 1.469022e-03	k: 205	n:160000
NOL7   160000 perm   39 sec   (4083 perm/sec)   p_kst 1.281250e-03   p_cons 1.791375e-01   p_joint 3.612500e-03

Joint ci ratio: 1.731493e-01	ci left: 2.745591e-03	ci right 3.271584e-03	k: 510	n:170000
Cons ci ratio: 2.035562e-02	ci left: 1.772564e-01	ci right 1.809075e-01	k: 30443	n:170000
KS ci ratio: 2.696956e-01	ci left: 1.073943e-03	ci right 1.414021e-03	k: 210	n:170000
NOL7   170000 perm   42 sec   (4010 perm/sec)   p_kst 1.235294e-03   p_cons 1.790765e-01   p_joint 3.000000e-03

Joint ci ratio: 1.695420e-01	ci left: 2.710035e-03	ci right 3.217294e-03	k: 532	n:180000
Cons ci ratio: 1.980525e-02	ci left: 1.769658e-01	ci right 1.805112e-01	k: 32172	n:180000
KS ci ratio: 2.605901e-01	ci left: 1.092077e-03	ci right 1.424321e-03	k: 225	n:180000
NOL7   180000 perm   46 sec   (3940 perm/sec)   p_kst 1.250000e-03   p_cons 1.787333e-01   p_joint 2.955556e-03

Joint ci ratio: 1.678274e-01	ci left: 2.622842e-03	ci right 3.108312e-03	k: 543	n:190000
Cons ci ratio: 1.926989e-02	ci left: 1.771212e-01	ci right 1.805728e-01	k: 33980	n:190000
KS ci ratio: 2.560999e-01	ci left: 1.073977e-03	ci right 1.394185e-03	k: 233	n:190000
NOL7   190000 perm   49 sec   (3870 perm/sec)   p_kst 1.226316e-03   p_cons 1.788421e-01   p_joint 2.857895e-03

Joint ci ratio: 1.333050e-01	ci left: 4.017936e-03	ci right 4.596576e-03	k: 860	n:200000
Cons ci ratio: 1.874671e-02	ci left: 1.777156e-01	ci right 1.810837e-01	k: 35879	n:200000
KS ci ratio: 2.482646e-01	ci left: 1.090540e-03	ci right 1.404203e-03	k: 248	n:200000
NOL7   200000 perm   53 sec   (3804 perm/sec)   p_kst 1.240000e-03   p_cons 1.793950e-01   p_joint 4.300000e-03

Joint ci ratio: 2.050033e-01	ci left: 1.559952e-03	ci right 1.920691e-03	k: 364	n:210000
Cons ci ratio: 1.828397e-02	ci left: 1.779318e-01	ci right 1.812199e-01	k: 37710	n:210000
KS ci ratio: 2.443726e-01	ci left: 1.074352e-03	ci right 1.377780e-03	k: 256	n:210000
NOL7   210000 perm   56 sec   (3729 perm/sec)   p_kst 1.219048e-03   p_cons 1.795714e-01   p_joint 1.733333e-03

Joint ci ratio: 2.099673e-01	ci left: 1.415775e-03	ci right 1.752121e-03	k: 347	n:220000
Cons ci ratio: 1.787346e-02	ci left: 1.778077e-01	ci right 1.810189e-01	k: 39470	n:220000
KS ci ratio: 2.379758e-01	ci left: 1.085310e-03	ci right 1.382627e-03	k: 270	n:220000
NOL7   220000 perm   60 sec   (3657 perm/sec)   p_kst 1.227273e-03   p_cons 1.794091e-01   p_joint 1.577273e-03

Joint ci ratio: 2.055838e-01	ci left: 1.416044e-03	ci right 1.744548e-03	k: 362	n:230000
Cons ci ratio: 1.747882e-02	ci left: 1.778728e-01	ci right 1.810135e-01	k: 41271	n:230000
KS ci ratio: 2.332889e-01	ci left: 1.083126e-03	ci right 1.373157e-03	k: 281	n:230000
NOL7   230000 perm   64 sec   (3597 perm/sec)   p_kst 1.221739e-03   p_cons 1.794391e-01   p_joint 1.573913e-03

Joint ci ratio: 3.041451e-01	ci left: 5.866280e-04	ci right 8.007287e-04	k: 165	n:240000
Cons ci ratio: 1.711478e-02	ci left: 1.778377e-01	ci right 1.809117e-01	k: 43049	n:240000
KS ci ratio: 2.296546e-01	ci left: 1.073320e-03	ci right 1.355614e-03	k: 290	n:240000
NOL7   240000 perm   68 sec   (3537 perm/sec)   p_kst 1.208333e-03   p_cons 1.793708e-01   p_joint 6.875000e-04

Joint ci ratio: 3.638777e-01	ci left: 3.797917e-04	ci right 5.521349e-04	k: 115	n:250000
Cons ci ratio: 1.676871e-02	ci left: 1.778738e-01	ci right 1.808857e-01	k: 44844	n:250000
KS ci ratio: 2.254339e-01	ci left: 1.071880e-03	ci right 1.347893e-03	k: 301	n:250000
NOL7   250000 perm   72 sec   (3478 perm/sec)   p_kst 1.204000e-03   p_cons 1.793760e-01   p_joint 4.600000e-04

Joint ci ratio: 3.577621e-01	ci left: 3.791743e-04	ci right 5.476724e-04	k: 119	n:260000
Cons ci ratio: 1.643680e-02	ci left: 1.780150e-01	ci right 1.809691e-01	k: 46667	n:260000
KS ci ratio: 2.203828e-01	ci left: 1.081494e-03	ci right 1.352898e-03	k: 315	n:260000
NOL7   260000 perm   76 sec   (3421 perm/sec)   p_kst 1.211538e-03   p_cons 1.794885e-01   p_joint 4.576923e-04

Joint ci ratio: 3.548193e-01	ci left: 3.718749e-04	ci right 5.354565e-04	k: 121	n:270000
Cons ci ratio: 1.612852e-02	ci left: 1.780614e-01	ci right 1.809603e-01	k: 48467	n:270000
KS ci ratio: 2.166448e-01	ci left: 1.079950e-03	ci right 1.345758e-03	k: 326	n:270000
NOL7   270000 perm   80 sec   (3362 perm/sec)   p_kst 1.207407e-03   p_cons 1.795074e-01   p_joint 4.481481e-04

Joint ci ratio: 3.477642e-01	ci left: 3.748754e-04	ci right 5.357593e-04	k: 126	n:280000
Cons ci ratio: 1.583196e-02	ci left: 1.781975e-01	ci right 1.810448e-01	k: 50293	n:280000
KS ci ratio: 2.121502e-01	ci left: 1.088696e-03	ci right 1.350375e-03	k: 340	n:280000
NOL7   280000 perm   85 sec   (3309 perm/sec)   p_kst 1.214286e-03   p_cons 1.796179e-01   p_joint 4.500000e-04

Joint ci ratio: 3.424140e-01	ci left: 3.745465e-04	ci right 5.322688e-04	k: 130	n:290000
Cons ci ratio: 1.555664e-02	ci left: 1.782216e-01	ci right 1.810193e-01	k: 52089	n:290000
KS ci ratio: 2.082181e-01	ci left: 1.093623e-03	ci right 1.350993e-03	k: 353	n:290000
NOL7   290000 perm   89 sec   (3258 perm/sec)   p_kst 1.217241e-03   p_cons 1.796172e-01   p_joint 4.482759e-04

Joint ci ratio: 3.385602e-01	ci left: 3.712065e-04	ci right 5.253786e-04	k: 133	n:300000
Cons ci ratio: 1.529866e-02	ci left: 1.781780e-01	ci right 1.809282e-01	k: 53865	n:300000
KS ci ratio: 2.053388e-01	ci left: 1.088776e-03	ci right 1.341018e-03	k: 363	n:300000
NOL7   300000 perm   93 sec   (3212 perm/sec)   p_kst 1.210000e-03   p_cons 1.795500e-01   p_joint 4.433333e-04

Joint ci ratio: 3.312251e-01	ci left: 3.769599e-04	ci right 5.294068e-04	k: 139	n:310000
Cons ci ratio: 1.504125e-02	ci left: 1.783691e-01	ci right 1.810756e-01	k: 55713	n:310000
KS ci ratio: 2.020356e-01	ci left: 1.090390e-03	ci right 1.338440e-03	k: 375	n:310000
NOL7   310000 perm   98 sec   (3167 perm/sec)   p_kst 1.209677e-03   p_cons 1.797194e-01   p_joint 4.483871e-04

Joint ci ratio: 3.254640e-01	ci left: 3.795172e-04	ci right 5.297711e-04	k: 144	n:320000
Cons ci ratio: 1.480063e-02	ci left: 1.784646e-01	ci right 1.811287e-01	k: 57534	n:320000
KS ci ratio: 1.986307e-01	ci left: 1.094903e-03	ci right 1.339274e-03	k: 388	n:320000
NOL7   320000 perm   103 sec   (3120 perm/sec)   p_kst 1.212500e-03   p_cons 1.797938e-01   p_joint 4.500000e-04

Joint ci ratio: 3.210659e-01	ci left: 3.791544e-04	ci right 5.268189e-04	k: 148	n:330000
Cons ci ratio: 1.456732e-02	ci left: 1.786331e-01	ci right 1.812574e-01	k: 59381	n:330000
KS ci ratio: 1.958809e-01	ci left: 1.093411e-03	ci right 1.333667e-03	k: 399	n:330000
NOL7   330000 perm   107 sec   (3078 perm/sec)   p_kst 1.209091e-03   p_cons 1.799424e-01   p_joint 4.484848e-04

Joint ci ratio: 3.519617e-01	ci left: 3.006706e-04	ci right 4.316214e-04	k: 123	n:340000
Cons ci ratio: 1.379759e-02	ci left: 1.905306e-01	ci right 1.931806e-01	k: 65230	n:340000
KS ci ratio: 1.934780e-01	ci left: 1.089230e-03	ci right 1.325286e-03	k: 409	n:340000
NOL7   340000 perm   112 sec   (3037 perm/sec)   p_kst 1.202941e-03   p_cons 1.918529e-01   p_joint 3.617647e-04

Joint ci ratio: 3.098319e-01	ci left: 3.864301e-04	ci right 5.306225e-04	k: 159	n:350000
Cons ci ratio: 1.359837e-02	ci left: 1.905652e-01	ci right 1.931771e-01	k: 67154	n:350000
KS ci ratio: 1.902564e-01	ci left: 1.096188e-03	ci right 1.329339e-03	k: 423	n:350000
NOL7   350000 perm   117 sec   (2994 perm/sec)   p_kst 1.208571e-03   p_cons 1.918686e-01   p_joint 4.542857e-04

Joint ci ratio: 3.360733e-01	ci left: 3.144221e-04	ci right 4.438426e-04	k: 135	n:360000
Cons ci ratio: 1.340238e-02	ci left: 1.907172e-01	ci right 1.932933e-01	k: 69121	n:360000
KS ci ratio: 1.869770e-01	ci left: 1.105438e-03	ci right 1.336044e-03	k: 438	n:360000
NOL7   360000 perm   122 sec   (2955 perm/sec)   p_kst 1.216667e-03   p_cons 1.920028e-01   p_joint 3.750000e-04

Joint ci ratio: 1.818670e-01	ci left: 1.140012e-03	ci right 1.370615e-03	k: 463	n:370000
Cons ci ratio: 1.321658e-02	ci left: 1.908155e-01	ci right 1.933569e-01	k: 71071	n:370000
KS ci ratio: 1.842684e-01	ci left: 1.109064e-03	ci right 1.336700e-03	k: 451	n:370000
NOL7   370000 perm   127 sec   (2920 perm/sec)   p_kst 1.218919e-03   p_cons 1.920838e-01   p_joint 1.251351e-03

Joint ci ratio: 1.426161e-01	ci left: 1.842679e-03	ci right 2.128158e-03	k: 753	n:380000
Cons ci ratio: 1.304139e-02	ci left: 1.908353e-01	ci right 1.933430e-01	k: 72993	n:380000
KS ci ratio: 1.807040e-01	ci left: 1.125084e-03	ci right 1.351053e-03	k: 469	n:380000
NOL7   380000 perm   132 sec   (2883 perm/sec)   p_kst 1.234211e-03   p_cons 1.920868e-01   p_joint 1.981579e-03

Joint ci ratio: 1.759010e-01	ci left: 1.159929e-03	ci right 1.386047e-03	k: 495	n:390000
Cons ci ratio: 1.287458e-02	ci left: 1.908160e-01	ci right 1.932911e-01	k: 74900	n:390000
KS ci ratio: 1.777038e-01	ci left: 1.135422e-03	ci right 1.359274e-03	k: 485	n:390000
NOL7   390000 perm   137 sec   (2845 perm/sec)   p_kst 1.243590e-03   p_cons 1.920513e-01   p_joint 1.269231e-03

Joint ci ratio: 1.743273e-01	ci left: 1.152445e-03	ci right 1.374881e-03	k: 504	n:400000
Cons ci ratio: 1.271084e-02	ci left: 1.908752e-01	ci right 1.933193e-01	k: 76838	n:400000
KS ci ratio: 1.759038e-01	ci left: 1.130930e-03	ci right 1.351397e-03	k: 495	n:400000
NOL7   400000 perm   142 sec   (2811 perm/sec)   p_kst 1.237500e-03   p_cons 1.920950e-01   p_joint 1.260000e-03

Joint ci ratio: 1.731327e-01	ci left: 1.140666e-03	ci right 1.359163e-03	k: 511	n:410000
Cons ci ratio: 1.255507e-02	ci left: 1.908854e-01	ci right 1.932995e-01	k: 78757	n:410000
KS ci ratio: 1.741575e-01	ci left: 1.126667e-03	ci right 1.343894e-03	k: 505	n:410000
NOL7   410000 perm   148 sec   (2776 perm/sec)   p_kst 1.231707e-03   p_cons 1.920902e-01   p_joint 1.246341e-03

Joint ci ratio: 1.708129e-01	ci left: 1.145406e-03	ci right 1.361568e-03	k: 525	n:420000
Cons ci ratio: 1.239814e-02	ci left: 1.910639e-01	ci right 1.934499e-01	k: 80747	n:420000
KS ci ratio: 1.726297e-01	ci left: 1.120340e-03	ci right 1.334255e-03	k: 514	n:420000
NOL7   420000 perm   153 sec   (2740 perm/sec)   p_kst 1.223810e-03   p_cons 1.922548e-01   p_joint 1.250000e-03

Joint ci ratio: 1.679621e-01	ci left: 1.158856e-03	ci right 1.373537e-03	k: 543	n:430000
Cons ci ratio: 1.225676e-02	ci left: 1.909861e-01	ci right 1.933437e-01	k: 82630	n:430000
KS ci ratio: 1.709782e-01	ci left: 1.116542e-03	ci right 1.327481e-03	k: 524	n:430000
NOL7   430000 perm   159 sec   (2709 perm/sec)   p_kst 1.218605e-03   p_cons 1.921628e-01   p_joint 1.262791e-03

Joint ci ratio: 1.331528e-01	ci left: 1.834984e-03	ci right 2.098916e-03	k: 864	n:440000
Cons ci ratio: 1.211230e-02	ci left: 1.911115e-01	ci right 1.934426e-01	k: 84601	n:440000
KS ci ratio: 1.690570e-01	ci left: 1.117278e-03	ci right 1.325743e-03	k: 536	n:440000
NOL7   440000 perm   164 sec   (2676 perm/sec)   p_kst 1.218182e-03   p_cons 1.922750e-01   p_joint 1.963636e-03

Joint ci ratio: 1.317889e-01	ci left: 1.832881e-03	ci right 2.093598e-03	k: 882	n:450000
Cons ci ratio: 1.197352e-02	ci left: 1.912137e-01	ci right 1.935192e-01	k: 86564	n:450000
KS ci ratio: 1.667437e-01	ci left: 1.124383e-03	ci right 1.331014e-03	k: 551	n:450000
NOL7   450000 perm   170 sec   (2644 perm/sec)   p_kst 1.224444e-03   p_cons 1.923644e-01   p_joint 1.960000e-03

Joint ci ratio: 1.612801e-01	ci left: 1.179161e-03	ci right 1.388072e-03	k: 589	n:460000
Cons ci ratio: 1.184155e-02	ci left: 1.912552e-01	ci right 1.935356e-01	k: 88501	n:460000
KS ci ratio: 1.656974e-01	ci left: 1.114523e-03	ci right 1.317930e-03	k: 558	n:460000
NOL7   460000 perm   176 sec   (2613 perm/sec)   p_kst 1.213043e-03   p_cons 1.923935e-01   p_joint 1.280435e-03

Joint ci ratio: 1.590049e-01	ci left: 1.188794e-03	ci right 1.396156e-03	k: 606	n:470000
Cons ci ratio: 1.170896e-02	ci left: 1.914246e-01	ci right 1.936813e-01	k: 90499	n:470000
KS ci ratio: 1.639470e-01	ci left: 1.115289e-03	ci right 1.316473e-03	k: 570	n:470000
NOL7   470000 perm   182 sec   (2583 perm/sec)   p_kst 1.212766e-03   p_cons 1.925511e-01   p_joint 1.289362e-03

Joint ci ratio: 2.026192e-01	ci left: 7.002401e-04	ci right 8.600518e-04	k: 373	n:480000
Cons ci ratio: 1.158221e-02	ci left: 1.915476e-01	ci right 1.937811e-01	k: 92478	n:480000
KS ci ratio: 1.623905e-01	ci left: 1.114034e-03	ci right 1.312898e-03	k: 581	n:480000
NOL7   480000 perm   188 sec   (2553 perm/sec)   p_kst 1.210417e-03   p_cons 1.926625e-01   p_joint 7.770833e-04

Joint ci ratio: 2.012788e-01	ci left: 6.956374e-04	ci right 8.532193e-04	k: 378	n:490000
Cons ci ratio: 1.145730e-02	ci left: 1.917247e-01	ci right 1.939360e-01	k: 94486	n:490000
KS ci ratio: 1.611498e-01	ci left: 1.108923e-03	ci right 1.305215e-03	k: 590	n:490000
NOL7   490000 perm   194 sec   (2525 perm/sec)   p_kst 1.204082e-03   p_cons 1.928286e-01   p_joint 7.714286e-04

Joint ci ratio: 1.999646e-01	ci left: 6.912222e-04	ci right 8.466568e-04	k: 383	n:500000
Cons ci ratio: 1.134486e-02	ci left: 1.916614e-01	ci right 1.938502e-01	k: 96377	n:500000
KS ci ratio: 1.595383e-01	ci left: 1.109781e-03	ci right 1.304073e-03	k: 602	n:500000
NOL7   500000 perm   200 sec   (2499 perm/sec)   p_kst 1.204000e-03   p_cons 1.927540e-01   p_joint 7.660000e-04

Joint ci ratio: 1.676705e-01	ci left: 9.808236e-04	ci right 1.162176e-03	k: 545	n:510000
Cons ci ratio: 1.123532e-02	ci left: 1.916105e-01	ci right 1.937773e-01	k: 98273	n:510000
KS ci ratio: 1.578457e-01	ci left: 1.112499e-03	ci right 1.305004e-03	k: 615	n:510000
NOL7   510000 perm   206 sec   (2472 perm/sec)   p_kst 1.205882e-03   p_cons 1.926922e-01   p_joint 1.068627e-03

Joint ci ratio: 1.664559e-01	ci left: 9.767028e-04	ci right 1.155854e-03	k: 553	n:520000
Cons ci ratio: 1.113096e-02	ci left: 1.915040e-01	ci right 1.936494e-01	k: 100139	n:520000
KS ci ratio: 1.568313e-01	ci left: 1.105883e-03	ci right 1.295898e-03	k: 623	n:520000
NOL7   520000 perm   213 sec   (2447 perm/sec)   p_kst 1.198077e-03   p_cons 1.925750e-01   p_joint 1.063462e-03

Joint ci ratio: 1.635289e-01	ci left: 9.944530e-04	ci right 1.173337e-03	k: 573	n:530000
Cons ci ratio: 1.102684e-02	ci left: 1.914751e-01	ci right 1.936000e-01	k: 102044	n:530000
KS ci ratio: 1.555898e-01	ci left: 1.103148e-03	ci right 1.291052e-03	k: 633	n:530000
NOL7   530000 perm   219 sec   (2421 perm/sec)   p_kst 1.194340e-03   p_cons 1.925358e-01   p_joint 1.081132e-03

Joint ci ratio: 1.615699e-01	ci left: 1.000909e-03	ci right 1.178588e-03	k: 587	n:540000
Cons ci ratio: 1.092182e-02	ci left: 1.915545e-01	ci right 1.936599e-01	k: 104007	n:540000
KS ci ratio: 1.540186e-01	ci left: 1.105861e-03	ci right 1.292150e-03	k: 646	n:540000
NOL7   540000 perm   225 sec   (2396 perm/sec)   p_kst 1.196296e-03   p_cons 1.926056e-01   p_joint 1.087037e-03

Joint ci ratio: 1.603477e-01	ci left: 9.984149e-04	ci right 1.174181e-03	k: 596	n:550000
Cons ci ratio: 1.082271e-02	ci left: 1.915458e-01	ci right 1.936319e-01	k: 105923	n:550000
KS ci ratio: 1.528423e-01	ci left: 1.103238e-03	ci right 1.287536e-03	k: 656	n:550000
NOL7   550000 perm   232 sec   (2371 perm/sec)   p_kst 1.192727e-03   p_cons 1.925873e-01   p_joint 1.083636e-03

Joint ci ratio: 1.170151e-01	ci left: 1.882944e-03	ci right 2.118684e-03	k: 1119	n:560000
Cons ci ratio: 1.072551e-02	ci left: 1.915590e-01	ci right 1.936264e-01	k: 107851	n:560000
KS ci ratio: 1.520352e-01	ci left: 1.095560e-03	ci right 1.277521e-03	k: 663	n:560000
NOL7   560000 perm   239 sec   (2346 perm/sec)   p_kst 1.183929e-03   p_cons 1.925911e-01   p_joint 1.998214e-03

Joint ci ratio: 1.160351e-01	ci left: 1.882271e-03	ci right 2.115819e-03	k: 1138	n:570000
Cons ci ratio: 1.063395e-02	ci left: 1.914824e-01	ci right 1.935312e-01	k: 109728	n:570000
KS ci ratio: 1.504570e-01	ci left: 1.099972e-03	ci right 1.280598e-03	k: 677	n:570000
NOL7   570000 perm   246 sec   (2320 perm/sec)   p_kst 1.187719e-03   p_cons 1.925053e-01   p_joint 1.996491e-03

Joint ci ratio: 1.151791e-01	ci left: 1.878281e-03	ci right 2.109497e-03	k: 1155	n:580000
Cons ci ratio: 1.054574e-02	ci left: 1.913776e-01	ci right 1.934082e-01	k: 111587	n:580000
KS ci ratio: 1.488194e-01	ci left: 1.105901e-03	ci right 1.285348e-03	k: 692	n:580000
NOL7   580000 perm   253 sec   (2296 perm/sec)   p_kst 1.193103e-03   p_cons 1.923914e-01   p_joint 1.991379e-03

Joint ci ratio: 1.144395e-01	ci left: 1.871139e-03	ci right 2.099897e-03	k: 1170	n:590000
Cons ci ratio: 1.045410e-02	ci left: 1.914422e-01	ci right 1.934557e-01	k: 113544	n:590000
KS ci ratio: 1.473383e-01	ci left: 1.110006e-03	ci right 1.288170e-03	k: 706	n:590000
NOL7   590000 perm   260 sec   (2272 perm/sec)   p_kst 1.196610e-03   p_cons 1.924475e-01   p_joint 1.983051e-03

Joint ci ratio: 1.137139e-01	ci left: 1.864240e-03	ci right 2.090612e-03	k: 1185	n:600000
Cons ci ratio: 1.036342e-02	ci left: 1.915463e-01	ci right 1.935433e-01	k: 115526	n:600000
KS ci ratio: 1.460020e-01	ci left: 1.112378e-03	ci right 1.289161e-03	k: 719	n:600000
NOL7   600000 perm   267 sec   (2249 perm/sec)   p_kst 1.198333e-03   p_cons 1.925433e-01   p_joint 1.975000e-03

Joint ci ratio: 1.128609e-01	ci left: 1.862350e-03	ci right 2.086684e-03	k: 1203	n:610000
Cons ci ratio: 1.027750e-02	ci left: 1.915734e-01	ci right 1.935541e-01	k: 117463	n:610000
KS ci ratio: 1.450983e-01	ci left: 1.108359e-03	ci right 1.283319e-03	k: 728	n:610000
NOL7   610000 perm   274 sec   (2225 perm/sec)   p_kst 1.193443e-03   p_cons 1.925623e-01   p_joint 1.972131e-03

Joint ci ratio: 1.117066e-01	ci left: 1.871503e-03	ci right 2.094482e-03	k: 1228	n:620000
Cons ci ratio: 1.019395e-02	ci left: 1.915917e-01	ci right 1.935563e-01	k: 119395	n:620000
KS ci ratio: 1.441135e-01	ci left: 1.106028e-03	ci right 1.279333e-03	k: 738	n:620000
NOL7   620000 perm   281 sec   (2205 perm/sec)   p_kst 1.190323e-03   p_cons 1.925726e-01   p_joint 1.980645e-03

Joint ci ratio: 1.109868e-01	ci left: 1.866486e-03	ci right 2.087340e-03	k: 1244	n:630000
Cons ci ratio: 1.010883e-02	ci left: 1.917188e-01	ci right 1.936682e-01	k: 121396	n:630000
KS ci ratio: 1.430528e-01	ci left: 1.105305e-03	ci right 1.277113e-03	k: 749	n:630000
NOL7   630000 perm   289 sec   (2183 perm/sec)   p_kst 1.188889e-03   p_cons 1.926921e-01   p_joint 1.974603e-03

Joint ci ratio: 1.105005e-01	ci left: 1.854033e-03	ci right 2.072390e-03	k: 1255	n:640000
Cons ci ratio: 1.002894e-02	ci left: 1.917452e-01	ci right 1.936794e-01	k: 123335	n:640000
KS ci ratio: 1.422025e-01	ci left: 1.101595e-03	ci right 1.271722e-03	k: 758	n:640000
NOL7   640000 perm   296 sec   (2162 perm/sec)   p_kst 1.184375e-03   p_cons 1.927109e-01   p_joint 1.960938e-03

Joint ci ratio: 1.094165e-01	ci left: 1.862913e-03	ci right 2.080025e-03	k: 1280	n:650000
Cons ci ratio: 9.951256e-03	ci left: 1.917602e-01	ci right 1.936795e-01	k: 125267	n:650000
KS ci ratio: 1.413671e-01	ci left: 1.098002e-03	ci right 1.266494e-03	k: 767	n:650000
NOL7   650000 perm   303 sec   (2142 perm/sec)   p_kst 1.180000e-03   p_cons 1.927185e-01   p_joint 1.969231e-03

Joint ci ratio: 1.083222e-01	ci left: 1.873009e-03	ci right 2.088975e-03	k: 1306	n:660000
Cons ci ratio: 9.878284e-03	ci left: 1.916825e-01	ci right 1.935869e-01	k: 127138	n:660000
KS ci ratio: 1.400061e-01	ci left: 1.103293e-03	ci right 1.270832e-03	k: 782	n:660000
NOL7   660000 perm   311 sec   (2122 perm/sec)   p_kst 1.184848e-03   p_cons 1.926333e-01   p_joint 1.978788e-03

Joint ci ratio: 1.075028e-01	ci left: 1.874099e-03	ci right 2.088453e-03	k: 1326	n:670000
Cons ci ratio: 9.805763e-03	ci left: 1.916429e-01	ci right 1.935329e-01	k: 129033	n:670000
KS ci ratio: 1.388581e-01	ci left: 1.105552e-03	ci right 1.271943e-03	k: 795	n:670000
NOL7   670000 perm   319 sec   (2102 perm/sec)   p_kst 1.186567e-03   p_cons 1.925866e-01   p_joint 1.979104e-03

Joint ci ratio: 1.067017e-01	ci left: 1.875162e-03	ci right 2.087940e-03	k: 1346	n:680000
Cons ci ratio: 9.733896e-03	ci left: 1.916339e-01	ci right 1.935099e-01	k: 130948	n:680000
KS ci ratio: 1.373981e-01	ci left: 1.113430e-03	ci right 1.279101e-03	k: 812	n:680000
NOL7   680000 perm   327 sec   (2082 perm/sec)   p_kst 1.194118e-03   p_cons 1.925706e-01   p_joint 1.979412e-03

Joint ci ratio: 1.061910e-01	ci left: 1.866325e-03	ci right 2.077022e-03	k: 1359	n:690000
Cons ci ratio: 9.663766e-03	ci left: 1.916195e-01	ci right 1.934817e-01	k: 132859	n:690000
KS ci ratio: 1.362299e-01	ci left: 1.116889e-03	ci right 1.281547e-03	k: 826	n:690000
NOL7   690000 perm   334 sec   (2064 perm/sec)   p_kst 1.197101e-03   p_cons 1.925493e-01   p_joint 1.969565e-03

Joint ci ratio: 1.053041e-01	ci left: 1.871651e-03	ci right 2.081076e-03	k: 1382	n:700000
Cons ci ratio: 9.595174e-03	ci left: 1.916040e-01	ci right 1.934528e-01	k: 134769	n:700000
KS ci ratio: 1.352522e-01	ci left: 1.117494e-03	ci right 1.280964e-03	k: 838	n:700000
NOL7   700000 perm   342 sec   (2045 perm/sec)   p_kst 1.197143e-03   p_cons 1.925271e-01   p_joint 1.974286e-03

Joint ci ratio: 1.048508e-01	ci left: 1.861747e-03	ci right 2.069111e-03	k: 1394	n:710000
Cons ci ratio: 9.528282e-03	ci left: 1.915807e-01	ci right 1.934162e-01	k: 136673	n:710000
KS ci ratio: 1.343743e-01	ci left: 1.116726e-03	ci right 1.278938e-03	k: 849	n:710000
NOL7   710000 perm   350 sec   (2027 perm/sec)   p_kst 1.195775e-03   p_cons 1.924972e-01   p_joint 1.963380e-03

Joint ci ratio: 1.038500e-01	ci left: 1.872411e-03	ci right 2.078851e-03	k: 1421	n:720000
Cons ci ratio: 9.462811e-03	ci left: 1.915566e-01	ci right 1.933792e-01	k: 138576	n:720000
KS ci ratio: 1.335132e-01	ci left: 1.115981e-03	ci right 1.276964e-03	k: 860	n:720000
NOL7   720000 perm   358 sec   (2009 perm/sec)   p_kst 1.194444e-03   p_cons 1.924667e-01   p_joint 1.973611e-03

Joint ci ratio: 1.030915e-01	ci left: 1.874784e-03	ci right 2.079885e-03	k: 1442	n:730000
Cons ci ratio: 9.396229e-03	ci left: 1.916139e-01	ci right 1.934242e-01	k: 140538	n:730000
KS ci ratio: 1.324407e-01	ci left: 1.119234e-03	ci right 1.279287e-03	k: 874	n:730000
NOL7   730000 perm   367 sec   (1989 perm/sec)   p_kst 1.197260e-03   p_cons 1.925178e-01   p_joint 1.975342e-03

Joint ci ratio: 1.024898e-01	ci left: 1.871832e-03	ci right 2.075342e-03	k: 1459	n:740000
Cons ci ratio: 9.330789e-03	ci left: 1.916778e-01	ci right 1.934760e-01	k: 142506	n:740000
KS ci ratio: 1.315417e-01	ci left: 1.119790e-03	ci right 1.278751e-03	k: 886	n:740000
NOL7   740000 perm   375 sec   (1973 perm/sec)   p_kst 1.197297e-03   p_cons 1.925757e-01   p_joint 1.971622e-03

Joint ci ratio: 1.019330e-01	ci left: 1.867662e-03	ci right 2.069549e-03	k: 1475	n:750000
Cons ci ratio: 9.266618e-03	ci left: 1.917427e-01	ci right 1.935290e-01	k: 144476	n:750000
KS ci ratio: 1.307337e-01	ci left: 1.119045e-03	ci right 1.276848e-03	k: 897	n:750000
NOL7   750000 perm   383 sec   (1956 perm/sec)   p_kst 1.196000e-03   p_cons 1.926347e-01   p_joint 1.966667e-03

Joint ci ratio: 1.016587e-01	ci left: 1.853345e-03	ci right 2.053113e-03	k: 1483	n:760000
Cons ci ratio: 9.205504e-03	ci left: 1.917468e-01	ci right 1.935214e-01	k: 146401	n:760000
KS ci ratio: 1.301555e-01	ci left: 1.114503e-03	ci right 1.270917e-03	k: 905	n:760000
NOL7   760000 perm   392 sec   (1938 perm/sec)   p_kst 1.190789e-03   p_cons 1.926329e-01   p_joint 1.951316e-03

Joint ci ratio: 1.009468e-01	ci left: 1.855857e-03	ci right 2.054413e-03	k: 1504	n:770000
Cons ci ratio: 9.145431e-03	ci left: 1.917560e-01	ci right 1.935190e-01	k: 148330	n:770000
KS ci ratio: 1.295141e-01	ci left: 1.111338e-03	ci right 1.266480e-03	k: 914	n:770000
NOL7   770000 perm   401 sec   (1920 perm/sec)   p_kst 1.187013e-03   p_cons 1.926364e-01   p_joint 1.953247e-03

Joint ci ratio: 1.004147e-01	ci left: 1.852060e-03	ci right 2.049104e-03	k: 1520	n:780000
Cons ci ratio: 9.085696e-03	ci left: 1.917932e-01	ci right 1.935450e-01	k: 150281	n:780000
KS ci ratio: 1.289519e-01	ci left: 1.107015e-03	ci right 1.260831e-03	k: 922	n:780000
NOL7   780000 perm   410 sec   (1904 perm/sec)   p_kst 1.182051e-03   p_cons 1.926679e-01   p_joint 1.948718e-03

Joint ci ratio: 9.995609e-02	ci left: 1.845894e-03	ci right 2.041332e-03	k: 1534	n:790000
Cons ci ratio: 9.028842e-03	ci left: 1.917701e-01	ci right 1.935106e-01	k: 152185	n:790000
KS ci ratio: 1.281904e-01	ci left: 1.106478e-03	ci right 1.259243e-03	k: 933	n:790000
NOL7   790000 perm   418 sec   (1888 perm/sec)   p_kst 1.181013e-03   p_cons 1.926392e-01   p_joint 1.941772e-03

Joint ci ratio: 9.924724e-02	ci left: 1.849635e-03	ci right 2.043999e-03	k: 1556	n:800000
Cons ci ratio: 8.972357e-03	ci left: 1.917713e-01	ci right 1.935009e-01	k: 154108	n:800000
KS ci ratio: 1.273074e-01	ci left: 1.108378e-03	ci right 1.260271e-03	k: 946	n:800000
NOL7   800000 perm   427 sec   (1873 perm/sec)   p_kst 1.182500e-03   p_cons 1.926350e-01   p_joint 1.945000e-03

Joint ci ratio: 9.855327e-02	ci left: 1.853289e-03	ci right 2.046597e-03	k: 1578	n:810000
Cons ci ratio: 8.917061e-03	ci left: 1.917676e-01	ci right 1.934865e-01	k: 156027	n:810000
KS ci ratio: 1.265084e-01	ci left: 1.109039e-03	ci right 1.259997e-03	k: 958	n:810000
NOL7   810000 perm   436 sec   (1857 perm/sec)   p_kst 1.182716e-03   p_cons 1.926259e-01   p_joint 1.948148e-03

Joint ci ratio: 9.796565e-02	ci left: 1.853289e-03	ci right 2.045378e-03	k: 1597	n:820000
Cons ci ratio: 8.861697e-03	ci left: 1.918017e-01	ci right 1.935102e-01	k: 157977	n:820000
KS ci ratio: 1.258540e-01	ci left: 1.107324e-03	ci right 1.257211e-03	k: 968	n:820000
NOL7   820000 perm   445 sec   (1842 perm/sec)   p_kst 1.180488e-03   p_cons 1.926549e-01   p_joint 1.947561e-03

Joint ci ratio: 9.741861e-02	ci left: 1.852117e-03	ci right 2.042952e-03	k: 1615	n:830000
Cons ci ratio: 8.805579e-03	ci left: 1.918976e-01	ci right 1.935961e-01	k: 159979	n:830000
KS ci ratio: 1.252098e-01	ci left: 1.105652e-03	ci right 1.254491e-03	k: 978	n:830000
NOL7   830000 perm   454 sec   (1827 perm/sec)   p_kst 1.178313e-03   p_cons 1.927458e-01   p_joint 1.945783e-03

Joint ci ratio: 9.661440e-02	ci left: 1.861432e-03	ci right 2.051553e-03	k: 1642	n:840000
Cons ci ratio: 8.753158e-03	ci left: 1.918974e-01	ci right 1.935857e-01	k: 161902	n:840000
KS ci ratio: 1.245123e-01	ci left: 1.105176e-03	ci right 1.253060e-03	k: 989	n:840000
NOL7   840000 perm   463 sec   (1813 perm/sec)   p_kst 1.177381e-03   p_cons 1.927405e-01   p_joint 1.954762e-03

Joint ci ratio: 9.594499e-02	ci left: 1.865940e-03	ci right 2.055127e-03	k: 1665	n:850000
Cons ci ratio: 8.701530e-03	ci left: 1.919019e-01	ci right 1.935802e-01	k: 163829	n:850000
KS ci ratio: 1.240125e-01	ci left: 1.101293e-03	ci right 1.248023e-03	k: 997	n:850000
NOL7   850000 perm   473 sec   (1798 perm/sec)   p_kst 1.172941e-03   p_cons 1.927400e-01   p_joint 1.958824e-03

Joint ci ratio: 9.545933e-02	ci left: 1.863537e-03	ci right 2.051471e-03	k: 1682	n:860000
Cons ci ratio: 8.651646e-03	ci left: 1.918761e-01	ci right 1.935445e-01	k: 165730	n:860000
KS ci ratio: 1.230299e-01	ci left: 1.106517e-03	ci right 1.252690e-03	k: 1013	n:860000
NOL7   860000 perm   482 sec   (1783 perm/sec)   p_kst 1.177907e-03   p_cons 1.927093e-01   p_joint 1.955814e-03

Joint ci ratio: 9.450868e-02	ci left: 1.880270e-03	ci right 2.067898e-03	k: 1716	n:870000
Cons ci ratio: 8.601497e-03	ci left: 1.918912e-01	ci right 1.935500e-01	k: 167666	n:870000
KS ci ratio: 1.222487e-01	ci left: 1.108283e-03	ci right 1.253692e-03	k: 1026	n:870000
NOL7   870000 perm   492 sec   (1770 perm/sec)   p_kst 1.179310e-03   p_cons 1.927195e-01   p_joint 1.972414e-03

Joint ci ratio: 9.409880e-02	ci left: 1.875547e-03	ci right 2.061847e-03	k: 1731	n:880000
Cons ci ratio: 8.550993e-03	ci left: 1.919501e-01	ci right 1.935996e-01	k: 169641	n:880000
KS ci ratio: 1.214821e-01	ci left: 1.110011e-03	ci right 1.254668e-03	k: 1039	n:880000
NOL7   880000 perm   501 sec   (1755 perm/sec)   p_kst 1.180682e-03   p_cons 1.927739e-01   p_joint 1.967045e-03

Joint ci ratio: 9.356015e-02	ci left: 1.876418e-03	ci right 2.061679e-03	k: 1751	n:890000
Cons ci ratio: 8.503087e-03	ci left: 1.919450e-01	ci right 1.935851e-01	k: 171560	n:890000
KS ci ratio: 1.203301e-01	ci left: 1.119332e-03	ci right 1.263721e-03	k: 1059	n:890000
NOL7   890000 perm   511 sec   (1742 perm/sec)   p_kst 1.189888e-03   p_cons 1.927640e-01   p_joint 1.967416e-03

Joint ci ratio: 9.337446e-02	ci left: 1.863164e-03	ci right 2.046732e-03	k: 1758	n:900000
Cons ci ratio: 8.457728e-03	ci left: 1.918756e-01	ci right 1.935064e-01	k: 173421	n:900000
KS ci ratio: 1.197106e-01	ci left: 1.118750e-03	ci right 1.262269e-03	k: 1070	n:900000
NOL7   900000 perm   521 sec   (1728 perm/sec)   p_kst 1.188889e-03   p_cons 1.926900e-01   p_joint 1.953333e-03

Joint ci ratio: 9.282194e-02	ci left: 1.865229e-03	ci right 2.047854e-03	k: 1779	n:910000
Cons ci ratio: 8.410443e-03	ci left: 1.919054e-01	ci right 1.935273e-01	k: 175371	n:910000
KS ci ratio: 1.192109e-01	ci left: 1.116051e-03	ci right 1.258584e-03	k: 1079	n:910000
NOL7   910000 perm   531 sec   (1715 perm/sec)   p_kst 1.185714e-03   p_cons 1.927154e-01   p_joint 1.954945e-03

Joint ci ratio: 9.248516e-02	ci left: 1.858758e-03	ci right 2.040053e-03	k: 1792	n:920000
Cons ci ratio: 8.365198e-03	ci left: 1.918880e-01	ci right 1.935009e-01	k: 177278	n:920000
KS ci ratio: 1.183373e-01	ci left: 1.120794e-03	ci right 1.262811e-03	k: 1095	n:920000
NOL7   920000 perm   541 sec   (1702 perm/sec)   p_kst 1.190217e-03   p_cons 1.926935e-01   p_joint 1.947826e-03

Joint ci ratio: 9.204994e-02	ci left: 1.856629e-03	ci right 2.036818e-03	k: 1809	n:930000
Cons ci ratio: 8.319555e-03	ci left: 1.919128e-01	ci right 1.935171e-01	k: 179224	n:930000
KS ci ratio: 1.172716e-01	ci left: 1.129615e-03	ci right 1.271371e-03	k: 1115	n:930000
NOL7   930000 perm   551 sec   (1689 perm/sec)   p_kst 1.198925e-03   p_cons 1.927140e-01   p_joint 1.945161e-03

Joint ci ratio: 9.152048e-02	ci left: 1.858705e-03	ci right 2.038003e-03	k: 1830	n:940000
Cons ci ratio: 8.277282e-03	ci left: 1.918383e-01	ci right 1.934338e-01	k: 181077	n:940000
KS ci ratio: 1.163882e-01	ci left: 1.135154e-03	ci right 1.276459e-03	k: 1132	n:940000
NOL7   940000 perm   561 sec   (1676 perm/sec)   p_kst 1.204255e-03   p_cons 1.926351e-01   p_joint 1.946809e-03

Joint ci ratio: 9.109867e-02	ci left: 1.856626e-03	ci right 2.034854e-03	k: 1847	n:950000
Cons ci ratio: 8.232275e-03	ci left: 1.918926e-01	ci right 1.934798e-01	k: 183051	n:950000
KS ci ratio: 1.159289e-01	ci left: 1.132404e-03	ci right 1.272771e-03	k: 1141	n:950000
NOL7   950000 perm   571 sec   (1663 perm/sec)   p_kst 1.201053e-03   p_cons 1.926853e-01   p_joint 1.944211e-03

Joint ci ratio: 9.058536e-02	ci left: 1.858664e-03	ci right 2.036029e-03	k: 1868	n:960000
Cons ci ratio: 8.189228e-03	ci left: 1.918989e-01	ci right 1.934779e-01	k: 184980	n:960000
KS ci ratio: 1.150752e-01	ci left: 1.137805e-03	ci right 1.277733e-03	k: 1158	n:960000
NOL7   960000 perm   581 sec   (1652 perm/sec)   p_kst 1.206250e-03   p_cons 1.926875e-01   p_joint 1.945833e-03

Joint ci ratio: 8.989022e-02	ci left: 1.868725e-03	ci right 2.045610e-03	k: 1897	n:970000
Cons ci ratio: 8.146363e-03	ci left: 1.919237e-01	ci right 1.934946e-01	k: 186927	n:970000
KS ci ratio: 1.143863e-01	ci left: 1.140094e-03	ci right 1.279407e-03	k: 1172	n:970000
NOL7   970000 perm   592 sec   (1639 perm/sec)   p_kst 1.208247e-03   p_cons 1.927082e-01   p_joint 1.955670e-03

Joint ci ratio: 8.946705e-02	ci left: 1.867612e-03	ci right 2.043516e-03	k: 1915	n:980000
Cons ci ratio: 8.105121e-03	ci left: 1.919114e-01	ci right 1.934741e-01	k: 188838	n:980000
KS ci ratio: 1.138057e-01	ci left: 1.140356e-03	ci right 1.278946e-03	k: 1184	n:980000
NOL7   980000 perm   602 sec   (1627 perm/sec)   p_kst 1.208163e-03   p_cons 1.926918e-01   p_joint 1.954082e-03

Joint ci ratio: 8.886584e-02	ci left: 1.874425e-03	ci right 2.049722e-03	k: 1941	n:990000
Cons ci ratio: 8.066202e-03	ci left: 1.918337e-01	ci right 1.933883e-01	k: 190684	n:990000
KS ci ratio: 1.127632e-01	ci left: 1.150430e-03	ci right 1.288879e-03	k: 1206	n:990000
NOL7   990000 perm   613 sec   (1616 perm/sec)   p_kst 1.218182e-03   p_cons 1.926101e-01   p_joint 1.960606e-03

Joint ci ratio: 8.845691e-02	ci left: 1.873281e-03	ci right 2.047624e-03	k: 1959	n:1000000
Cons ci ratio: 8.025385e-03	ci left: 1.918525e-01	ci right 1.933993e-01	k: 192625	n:1000000
KS ci ratio: 1.120229e-01	ci left: 1.154476e-03	ci right 1.292439e-03	k: 1222	n:1000000
NOL7   1000000 perm   623 sec   (1604 perm/sec)   p_kst 1.222000e-03   p_cons 1.926250e-01   p_joint 1.959000e-03

Joint ci ratio: 8.798675e-02	ci left: 1.875067e-03	ci right 2.048601e-03	k: 1980	n:1010000
Cons ci ratio: 7.984496e-03	ci left: 1.918976e-01	ci right 1.934369e-01	k: 194593	n:1010000
KS ci ratio: 1.113871e-01	ci left: 1.156519e-03	ci right 1.293891e-03	k: 1236	n:1010000
NOL7   1010000 perm   634 sec   (1593 perm/sec)   p_kst 1.223762e-03   p_cons 1.926663e-01   p_joint 1.960396e-03

Joint ci ratio: 8.752401e-02	ci left: 1.876821e-03	ci right 2.049556e-03	k: 2001	n:1020000
Cons ci ratio: 7.945126e-03	ci left: 1.919066e-01	ci right 1.934383e-01	k: 196525	n:1020000
KS ci ratio: 1.108063e-01	ci left: 1.157572e-03	ci right 1.294305e-03	k: 1249	n:1020000
NOL7   1020000 perm   645 sec   (1581 perm/sec)   p_kst 1.224510e-03   p_cons 1.926716e-01   p_joint 1.961765e-03

Joint ci ratio: 8.721981e-02	ci left: 1.871894e-03	ci right 2.043547e-03	k: 2015	n:1030000
Cons ci ratio: 7.904952e-03	ci left: 1.919697e-01	ci right 1.934942e-01	k: 198513	n:1030000
KS ci ratio: 1.101909e-01	ci left: 1.159550e-03	ci right 1.295707e-03	k: 1263	n:1030000
NOL7   1030000 perm   656 sec   (1569 perm/sec)   p_kst 1.226214e-03   p_cons 1.927311e-01   p_joint 1.956311e-03

Joint ci ratio: 8.687590e-02	ci left: 1.868945e-03	ci right 2.039617e-03	k: 2031	n:1040000
Cons ci ratio: 7.866791e-03	ci left: 1.919759e-01	ci right 1.934931e-01	k: 200443	n:1040000
KS ci ratio: 1.095427e-01	ci left: 1.162427e-03	ci right 1.298067e-03	k: 1278	n:1040000
NOL7   1040000 perm   667 sec   (1558 perm/sec)   p_kst 1.228846e-03   p_cons 1.927337e-01   p_joint 1.952885e-03

Joint ci ratio: 8.647259e-02	ci left: 1.868848e-03	ci right 2.038680e-03	k: 2050	n:1050000
Cons ci ratio: 7.827643e-03	ci left: 1.920430e-01	ci right 1.935530e-01	k: 202437	n:1050000
KS ci ratio: 1.088216e-01	ci left: 1.167105e-03	ci right 1.302337e-03	k: 1295	n:1050000
NOL7   1050000 perm   679 sec   (1547 perm/sec)   p_kst 1.233333e-03   p_cons 1.927971e-01   p_joint 1.952381e-03

Joint ci ratio: 8.599163e-02	ci left: 1.872448e-03	ci right 2.041613e-03	k: 2073	n:1060000
Cons ci ratio: 7.789523e-03	ci left: 1.920908e-01	ci right 1.935939e-01	k: 204412	n:1060000
KS ci ratio: 1.079911e-01	ci left: 1.174451e-03	ci right 1.309430e-03	k: 1315	n:1060000
NOL7   1060000 perm   690 sec   (1536 perm/sec)   p_kst 1.240566e-03   p_cons 1.928415e-01   p_joint 1.955660e-03

Joint ci ratio: 8.533533e-02	ci left: 1.884215e-03	ci right 2.053079e-03	k: 2105	n:1070000
Cons ci ratio: 7.754631e-03	ci left: 1.920305e-01	ci right 1.935263e-01	k: 206272	n:1070000
KS ci ratio: 1.076239e-01	ci left: 1.171659e-03	ci right 1.305830e-03	k: 1324	n:1070000
NOL7   1070000 perm   701 sec   (1526 perm/sec)   p_kst 1.237383e-03   p_cons 1.927776e-01   p_joint 1.967290e-03

Joint ci ratio: 8.487300e-02	ci left: 1.887612e-03	ci right 2.055818e-03	k: 2128	n:1080000
Cons ci ratio: 7.717792e-03	ci left: 1.920684e-01	ci right 1.935574e-01	k: 208237	n:1080000
KS ci ratio: 1.069000e-01	ci left: 1.177030e-03	ci right 1.310853e-03	k: 1342	n:1080000
NOL7   1080000 perm   713 sec   (1516 perm/sec)   p_kst 1.242593e-03   p_cons 1.928120e-01   p_joint 1.970370e-03

Joint ci ratio: 8.457577e-02	ci left: 1.883764e-03	ci right 2.051010e-03	k: 2143	n:1090000
Cons ci ratio: 7.681948e-03	ci left: 1.920863e-01	ci right 1.935685e-01	k: 210181	n:1090000
KS ci ratio: 1.064649e-01	ci left: 1.176054e-03	ci right 1.309187e-03	k: 1353	n:1090000
NOL7   1090000 perm   724 sec   (1506 perm/sec)   p_kst 1.241284e-03   p_cons 1.928266e-01   p_joint 1.966055e-03

Joint ci ratio: 8.432077e-02	ci left: 1.878207e-03	ci right 2.044433e-03	k: 2156	n:1100000
Cons ci ratio: 7.648788e-03	ci left: 1.920150e-01	ci right 1.934902e-01	k: 212027	n:1100000
KS ci ratio: 1.061911e-01	ci left: 1.171557e-03	ci right 1.303819e-03	k: 1360	n:1100000
NOL7   1100000 perm   735 sec   (1496 perm/sec)   p_kst 1.236364e-03   p_cons 1.927518e-01   p_joint 1.960000e-03

Joint ci ratio: 1.252284e-01	ci left: 8.267416e-04	ci right 9.380515e-04	k: 978	n:1110000
Cons ci ratio: 7.615194e-03	ci left: 1.919801e-01	ci right 1.934485e-01	k: 213912	n:1110000
KS ci ratio: 1.058418e-01	ci left: 1.168896e-03	ci right 1.300396e-03	k: 1369	n:1110000
NOL7   1110000 perm   747 sec   (1486 perm/sec)   p_kst 1.233333e-03   p_cons 1.927135e-01   p_joint 8.810811e-04

Joint ci ratio: 1.243422e-01	ci left: 8.314699e-04	ci right 9.425659e-04	k: 992	n:1120000
Cons ci ratio: 7.581059e-03	ci left: 1.919859e-01	ci right 1.934478e-01	k: 215842	n:1120000
KS ci ratio: 1.053432e-01	ci left: 1.169760e-03	ci right 1.300699e-03	k: 1382	n:1120000
NOL7   1120000 perm   759 sec   (1476 perm/sec)   p_kst 1.233929e-03   p_cons 1.927161e-01   p_joint 8.857143e-04

Joint ci ratio: 1.239684e-01	ci left: 8.292566e-04	ci right 9.396992e-04	k: 998	n:1130000
Cons ci ratio: 7.547637e-03	ci left: 1.919811e-01	ci right 1.934364e-01	k: 217760	n:1130000
KS ci ratio: 1.049645e-01	ci left: 1.168025e-03	ci right 1.298270e-03	k: 1392	n:1130000
NOL7   1130000 perm   771 sec   (1466 perm/sec)   p_kst 1.231858e-03   p_cons 1.927080e-01   p_joint 8.831858e-04

Joint ci ratio: 1.235365e-01	ci left: 8.279326e-04	ci right 9.377866e-04	k: 1005	n:1140000
Cons ci ratio: 7.514208e-03	ci left: 1.919947e-01	ci right 1.934437e-01	k: 219699	n:1140000
KS ci ratio: 1.045153e-01	ci left: 1.168029e-03	ci right 1.297684e-03	k: 1404	n:1140000
NOL7   1140000 perm   783 sec   (1457 perm/sec)   p_kst 1.231579e-03   p_cons 1.927184e-01   p_joint 8.815789e-04

Joint ci ratio: 1.231090e-01	ci left: 8.266323e-04	ci right 9.359066e-04	k: 1012	n:1150000
Cons ci ratio: 7.480676e-03	ci left: 1.920307e-01	ci right 1.934735e-01	k: 221664	n:1150000
KS ci ratio: 1.040718e-01	ci left: 1.168035e-03	ci right 1.297106e-03	k: 1416	n:1150000
NOL7   1150000 perm   794 sec   (1448 perm/sec)   p_kst 1.231304e-03   p_cons 1.927513e-01   p_joint 8.800000e-04

Joint ci ratio: 1.225058e-01	ci left: 8.278621e-04	ci right 9.367238e-04	k: 1022	n:1160000
Cons ci ratio: 7.446805e-03	ci left: 1.920988e-01	ci right 1.935355e-01	k: 223667	n:1160000
KS ci ratio: 1.036703e-01	ci left: 1.167202e-03	ci right 1.295654e-03	k: 1427	n:1160000
NOL7   1160000 perm   807 sec   (1438 perm/sec)   p_kst 1.230172e-03   p_cons 1.928164e-01   p_joint 8.810345e-04

Joint ci ratio: 1.220296e-01	ci left: 8.274148e-04	ci right 9.357643e-04	k: 1030	n:1170000
Cons ci ratio: 7.415609e-03	ci left: 1.920727e-01	ci right 1.935032e-01	k: 225561	n:1170000
KS ci ratio: 1.034174e-01	ci left: 1.163054e-03	ci right 1.290718e-03	k: 1434	n:1170000
NOL7   1170000 perm   819 sec   (1429 perm/sec)   p_kst 1.225641e-03   p_cons 1.927872e-01   p_joint 8.803419e-04

Joint ci ratio: 1.212672e-01	ci left: 8.310846e-04	ci right 9.391860e-04	k: 1043	n:1180000
Cons ci ratio: 7.384720e-03	ci left: 1.920505e-01	ci right 1.934748e-01	k: 227459	n:1180000
KS ci ratio: 1.028100e-01	ci left: 1.167233e-03	ci right 1.294557e-03	k: 1451	n:1180000
NOL7   1180000 perm   831 sec   (1420 perm/sec)   p_kst 1.229661e-03   p_cons 1.927619e-01   p_joint 8.838983e-04

Joint ci ratio: 1.208628e-01	ci left: 8.298049e-04	ci right 9.373541e-04	k: 1050	n:1190000
Cons ci ratio: 7.353937e-03	ci left: 1.920403e-01	ci right 1.934586e-01	k: 229371	n:1190000
KS ci ratio: 1.023878e-01	ci left: 1.167250e-03	ci right 1.294021e-03	k: 1463	n:1190000
NOL7   1190000 perm   844 sec   (1411 perm/sec)   p_kst 1.229412e-03   p_cons 1.927487e-01   p_joint 8.823529e-04

Joint ci ratio: 1.201785e-01	ci left: 8.325885e-04	ci right 9.398441e-04	k: 1062	n:1200000
Cons ci ratio: 7.322594e-03	ci left: 1.920704e-01	ci right 1.934828e-01	k: 231331	n:1200000
KS ci ratio: 1.021093e-01	ci left: 1.164019e-03	ci right 1.290075e-03	k: 1471	n:1200000
NOL7   1200000 perm   856 sec   (1402 perm/sec)   p_kst 1.225833e-03   p_cons 1.927758e-01   p_joint 8.850000e-04

Joint ci ratio: 1.195614e-01	ci left: 8.345260e-04	ci right 9.414401e-04	k: 1073	n:1210000
Cons ci ratio: 7.292404e-03	ci left: 1.920677e-01	ci right 1.934743e-01	k: 233252	n:1210000
KS ci ratio: 1.017300e-01	ci left: 1.163258e-03	ci right 1.288736e-03	k: 1482	n:1210000
NOL7   1210000 perm   869 sec   (1393 perm/sec)   p_kst 1.224793e-03   p_cons 1.927702e-01   p_joint 8.867769e-04

Joint ci ratio: 1.192289e-01	ci left: 8.324567e-04	ci right 9.387883e-04	k: 1079	n:1220000
Cons ci ratio: 7.262354e-03	ci left: 1.920749e-01	ci right 1.934757e-01	k: 235185	n:1220000
KS ci ratio: 1.013548e-01	ci left: 1.162510e-03	ci right 1.287418e-03	k: 1493	n:1220000
NOL7   1220000 perm   881 sec   (1384 perm/sec)   p_kst 1.223770e-03   p_cons 1.927746e-01   p_joint 8.844262e-04

Joint ci ratio: 1.188993e-01	ci left: 8.304215e-04	ci right 9.361792e-04	k: 1085	n:1230000
Cons ci ratio: 7.233920e-03	ci left: 1.920285e-01	ci right 1.934234e-01	k: 237052	n:1230000
KS ci ratio: 1.005831e-01	ci left: 1.171286e-03	ci right 1.296122e-03	k: 1516	n:1230000
NOL7   1230000 perm   894 sec   (1376 perm/sec)   p_kst 1.232520e-03   p_cons 1.927252e-01   p_joint 8.821138e-04

Joint ci ratio: 1.183015e-01	ci left: 8.323324e-04	ci right 9.377633e-04	k: 1096	n:1240000
Cons ci ratio: 7.204716e-03	ci left: 1.920303e-01	ci right 1.934196e-01	k: 238978	n:1240000
KS ci ratio: 1.003191e-01	ci left: 1.168130e-03	ci right 1.292283e-03	k: 1524	n:1240000
NOL7   1240000 perm   907 sec   (1368 perm/sec)   p_kst 1.229032e-03   p_cons 1.927242e-01   p_joint 8.838710e-04

Joint ci ratio: 1.175536e-01	ci left: 8.365434e-04	ci right 9.417913e-04	k: 1110	n:1250000
Cons ci ratio: 7.175087e-03	ci left: 1.920656e-01	ci right 1.934494e-01	k: 240946	n:1250000
KS ci ratio: 9.963511e-02	ci left: 1.175165e-03	ci right 1.299165e-03	k: 1545	n:1250000
NOL7   1250000 perm   919 sec   (1360 perm/sec)   p_kst 1.236000e-03   p_cons 1.927568e-01   p_joint 8.880000e-04

Joint ci ratio: 1.167158e-01	ci left: 8.422307e-04	ci right 9.473869e-04	k: 1126	n:1260000
Cons ci ratio: 7.147043e-03	ci left: 1.920473e-01	ci right 1.934256e-01	k: 242847	n:1260000
KS ci ratio: 9.909161e-02	ci left: 1.178995e-03	ci right 1.302681e-03	k: 1562	n:1260000
NOL7   1260000 perm   932 sec   (1351 perm/sec)   p_kst 1.239683e-03   p_cons 1.927357e-01   p_joint 8.936508e-04

Joint ci ratio: 1.161502e-01	ci left: 8.440082e-04	ci right 9.488407e-04	k: 1137	n:1270000
Cons ci ratio: 7.119864e-03	ci left: 1.920057e-01	ci right 1.933784e-01	k: 244718	n:1270000
KS ci ratio: 9.874480e-02	ci left: 1.178159e-03	ci right 1.301299e-03	k: 1573	n:1270000
NOL7   1270000 perm   945 sec   (1344 perm/sec)   p_kst 1.238583e-03   p_cons 1.926913e-01   p_joint 8.952756e-04

Joint ci ratio: 1.160486e-01	ci left: 8.389314e-04	ci right 9.430358e-04	k: 1139	n:1280000
Cons ci ratio: 7.091551e-03	ci left: 1.920279e-01	ci right 1.933953e-01	k: 246670	n:1280000
KS ci ratio: 9.846383e-02	ci left: 1.175812e-03	ci right 1.298337e-03	k: 1582	n:1280000
NOL7   1280000 perm   958 sec   (1336 perm/sec)   p_kst 1.235938e-03   p_cons 1.927109e-01   p_joint 8.898438e-04

Joint ci ratio: 1.154425e-01	ci left: 8.414611e-04	ci right 9.452969e-04	k: 1151	n:1290000
Cons ci ratio: 7.064506e-03	ci left: 1.920088e-01	ci right 1.933708e-01	k: 248569	n:1290000
KS ci ratio: 9.803123e-02	ci left: 1.177284e-03	ci right 1.299392e-03	k: 1596	n:1290000
NOL7   1290000 perm   971 sec   (1328 perm/sec)   p_kst 1.237209e-03   p_cons 1.926891e-01   p_joint 8.922481e-04

Joint ci ratio: 1.151431e-01	ci left: 8.394706e-04	ci right 9.427739e-04	k: 1157	n:1300000
Cons ci ratio: 7.037037e-03	ci left: 1.920223e-01	ci right 1.933791e-01	k: 250510	n:1300000
KS ci ratio: 9.772583e-02	ci left: 1.175732e-03	ci right 1.297277e-03	k: 1606	n:1300000
NOL7   1300000 perm   984 sec   (1320 perm/sec)   p_kst 1.235385e-03   p_cons 1.927000e-01   p_joint 8.900000e-04

Joint ci ratio: 1.136791e-01	ci left: 8.553082e-04	ci right 9.591325e-04	k: 1187	n:1310000
Cons ci ratio: 7.297459e-03	ci left: 1.798509e-01	ci right 1.811689e-01	k: 236467	n:1310000
KS ci ratio: 9.742327e-02	ci left: 1.174204e-03	ci right 1.295194e-03	k: 1616	n:1310000
NOL7   1310000 perm   998 sec   (1313 perm/sec)   p_kst 1.233588e-03   p_cons 1.805092e-01   p_joint 9.061069e-04

Joint ci ratio: 1.134408e-01	ci left: 8.525088e-04	ci right 9.557619e-04	k: 1192	n:1320000
Cons ci ratio: 7.269319e-03	ci left: 1.798715e-01	ci right 1.811845e-01	k: 238296	n:1320000
KS ci ratio: 9.715339e-02	ci left: 1.171961e-03	ci right 1.292366e-03	k: 1625	n:1320000
NOL7   1320000 perm   1011 sec   (1305 perm/sec)   p_kst 1.231061e-03   p_cons 1.805273e-01   p_joint 9.030303e-04

Joint ci ratio: 1.130153e-01	ci left: 8.526743e-04	ci right 9.555342e-04	k: 1201	n:1330000
Cons ci ratio: 7.242533e-03	ci left: 1.798497e-01	ci right 1.811577e-01	k: 240069	n:1330000
KS ci ratio: 9.670825e-02	ci left: 1.174154e-03	ci right 1.294201e-03	k: 1640	n:1330000
NOL7   1330000 perm   1025 sec   (1298 perm/sec)   p_kst 1.233083e-03   p_cons 1.805030e-01   p_joint 9.030075e-04

Joint ci ratio: 1.124089e-01	ci left: 8.557391e-04	ci right 9.583781e-04	k: 1214	n:1340000
Cons ci ratio: 7.216169e-03	ci left: 1.798230e-01	ci right 1.811261e-01	k: 241835	n:1340000
KS ci ratio: 9.635659e-02	ci left: 1.174130e-03	ci right 1.293714e-03	k: 1652	n:1340000
NOL7   1340000 perm   1038 sec   (1290 perm/sec)   p_kst 1.232836e-03   p_cons 1.804739e-01   p_joint 9.059701e-04

Joint ci ratio: 1.121785e-01	ci left: 8.529999e-04	ci right 9.550868e-04	k: 1219	n:1350000
Cons ci ratio: 7.190217e-03	ci left: 1.797916e-01	ci right 1.810897e-01	k: 243594	n:1350000
KS ci ratio: 9.612442e-02	ci left: 1.171216e-03	ci right 1.290199e-03	k: 1660	n:1350000
NOL7   1350000 perm   1052 sec   (1283 perm/sec)   p_kst 1.229630e-03   p_cons 1.804400e-01   p_joint 9.029630e-04

Joint ci ratio: 1.117670e-01	ci left: 8.531601e-04	ci right 9.548670e-04	k: 1228	n:1360000
Cons ci ratio: 7.163064e-03	ci left: 1.798216e-01	ci right 1.811150e-01	k: 245436	n:1360000
KS ci ratio: 9.552217e-02	ci left: 1.177676e-03	ci right 1.296523e-03	k: 1681	n:1360000
NOL7   1360000 perm   1066 sec   (1275 perm/sec)   p_kst 1.236029e-03   p_cons 1.804676e-01   p_joint 9.029412e-04

Joint ci ratio: 1.111804e-01	ci left: 8.561572e-04	ci right 9.576506e-04	k: 1241	n:1370000
Cons ci ratio: 7.137343e-03	ci left: 1.798045e-01	ci right 1.810932e-01	k: 247214	n:1370000
KS ci ratio: 9.515514e-02	ci left: 1.178342e-03	ci right 1.296775e-03	k: 1694	n:1370000
NOL7   1370000 perm   1080 sec   (1268 perm/sec)   p_kst 1.236496e-03   p_cons 1.804482e-01   p_joint 9.058394e-04

Joint ci ratio: 1.109129e-01	ci left: 8.541802e-04	ci right 9.551797e-04	k: 1247	n:1380000
Cons ci ratio: 7.112717e-03	ci left: 1.797537e-01	ci right 1.810375e-01	k: 248945	n:1380000
KS ci ratio: 9.487576e-02	ci left: 1.176878e-03	ci right 1.294797e-03	k: 1704	n:1380000
NOL7   1380000 perm   1094 sec   (1261 perm/sec)   p_kst 1.234783e-03   p_cons 1.803949e-01   p_joint 9.036232e-04

Joint ci ratio: 1.106033e-01	ci left: 8.529315e-04	ci right 9.534833e-04	k: 1254	n:1390000
Cons ci ratio: 7.086654e-03	ci left: 1.797740e-01	ci right 1.810532e-01	k: 250774	n:1390000
KS ci ratio: 9.459883e-02	ci left: 1.175435e-03	ci right 1.292846e-03	k: 1714	n:1390000
NOL7   1390000 perm   1108 sec   (1254 perm/sec)   p_kst 1.233094e-03   p_cons 1.804129e-01   p_joint 9.021583e-04

Joint ci ratio: 1.102525e-01	ci left: 8.523956e-04	ci right 9.525448e-04	k: 1262	n:1400000
Cons ci ratio: 7.060193e-03	ci left: 1.798226e-01	ci right 1.810973e-01	k: 252643	n:1400000
KS ci ratio: 9.435170e-02	ci left: 1.173315e-03	ci right 1.290192e-03	k: 1723	n:1400000
NOL7   1400000 perm   1122 sec   (1248 perm/sec)   p_kst 1.230714e-03   p_cons 1.804593e-01   p_joint 9.014286e-04

Joint ci ratio: 1.099050e-01	ci left: 8.518677e-04	ci right 9.516191e-04	k: 1270	n:1410000
Cons ci ratio: 7.035426e-03	ci left: 1.798117e-01	ci right 1.810819e-01	k: 254429	n:1410000
KS ci ratio: 9.416091e-02	ci left: 1.169841e-03	ci right 1.286124e-03	k: 1730	n:1410000
NOL7   1410000 perm   1136 sec   (1241 perm/sec)   p_kst 1.226950e-03   p_cons 1.804461e-01   p_joint 9.007092e-04

Joint ci ratio: 1.190710e-01	ci left: 7.172564e-04	ci right 8.087432e-04	k: 1082	n:1420000
Cons ci ratio: 7.010567e-03	ci left: 1.798157e-01	ci right 1.810814e-01	k: 256236	n:1420000
KS ci ratio: 9.359460e-02	ci left: 1.176045e-03	ci right 1.292202e-03	k: 1751	n:1420000
NOL7   1420000 perm   1150 sec   (1235 perm/sec)   p_kst 1.233099e-03   p_cons 1.804479e-01   p_joint 7.619718e-04

Joint ci ratio: 1.185250e-01	ci left: 7.190259e-04	ci right 8.102883e-04	k: 1092	n:1430000
Cons ci ratio: 6.985293e-03	ci left: 1.798483e-01	ci right 1.811097e-01	k: 258084	n:1430000
KS ci ratio: 9.324926e-02	ci left: 1.176699e-03	ci right 1.292469e-03	k: 1764	n:1430000
NOL7   1430000 perm   1165 sec   (1228 perm/sec)   p_kst 1.233566e-03   p_cons 1.804783e-01   p_joint 7.636364e-04

Joint ci ratio: 1.184169e-01	ci left: 7.153803e-04	ci right 8.060915e-04	k: 1094	n:1440000
Cons ci ratio: 6.962055e-03	ci left: 1.798055e-01	ci right 1.810624e-01	k: 259824	n:1440000
KS ci ratio: 9.288156e-02	ci left: 1.178024e-03	ci right 1.293442e-03	k: 1778	n:1440000
NOL7   1440000 perm   1179 sec   (1222 perm/sec)   p_kst 1.234722e-03   p_cons 1.804333e-01   p_joint 7.597222e-04

Joint ci ratio: 1.180939e-01	ci left: 7.144622e-04	ci right 8.047925e-04	k: 1100	n:1450000
Cons ci ratio: 6.938546e-03	ci left: 1.797848e-01	ci right 1.810372e-01	k: 261595	n:1450000
KS ci ratio: 9.244078e-02	ci left: 1.181352e-03	ci right 1.296517e-03	k: 1795	n:1450000
NOL7   1450000 perm   1193 sec   (1215 perm/sec)   p_kst 1.237931e-03   p_cons 1.804103e-01   p_joint 7.586207e-04

Joint ci ratio: 1.175082e-01	ci left: 7.168809e-04	ci right 8.070363e-04	k: 1111	n:1460000
Cons ci ratio: 6.915482e-03	ci left: 1.797554e-01	ci right 1.810034e-01	k: 263353	n:1460000
KS ci ratio: 9.215904e-02	ci left: 1.180621e-03	ci right 1.295345e-03	k: 1806	n:1460000
NOL7   1460000 perm   1208 sec   (1209 perm/sec)   p_kst 1.236986e-03   p_cons 1.803788e-01   p_joint 7.609589e-04

Joint ci ratio: 1.171401e-01	ci left: 7.166263e-04	ci right 8.064479e-04	k: 1118	n:1470000
Cons ci ratio: 6.892804e-03	ci left: 1.797196e-01	ci right 1.809633e-01	k: 265101	n:1470000
KS ci ratio: 9.198122e-02	ci left: 1.177242e-03	ci right 1.291405e-03	k: 1813	n:1470000
NOL7   1470000 perm   1222 sec   (1203 perm/sec)   p_kst 1.233333e-03   p_cons 1.803408e-01   p_joint 7.605442e-04

Joint ci ratio: 1.169836e-01	ci left: 7.137518e-04	ci right 8.030853e-04	k: 1121	n:1480000
Cons ci ratio: 6.868826e-03	ci left: 1.797498e-01	ci right 1.809893e-01	k: 266946	n:1480000
KS ci ratio: 9.182967e-02	ci left: 1.173248e-03	ci right 1.286826e-03	k: 1819	n:1480000
NOL7   1480000 perm   1237 sec   (1196 perm/sec)   p_kst 1.229054e-03   p_cons 1.803689e-01   p_joint 7.574324e-04

Joint ci ratio: 1.164656e-01	ci left: 7.154771e-04	ci right 8.046027e-04	k: 1131	n:1490000
Cons ci ratio: 6.846416e-03	ci left: 1.797226e-01	ci right 1.809579e-01	k: 268706	n:1490000
KS ci ratio: 9.155346e-02	ci left: 1.172587e-03	ci right 1.285742e-03	k: 1830	n:1490000
NOL7   1490000 perm   1252 sec   (1190 perm/sec)   p_kst 1.228188e-03   p_cons 1.803396e-01   p_joint 7.590604e-04

Joint ci ratio: 1.162093e-01	ci left: 7.139435e-04	ci right 8.026690e-04	k: 1136	n:1500000
Cons ci ratio: 6.823055e-03	ci left: 1.797463e-01	ci right 1.809776e-01	k: 270542	n:1500000
KS ci ratio: 9.125492e-02	ci left: 1.172587e-03	ci right 1.285353e-03	k: 1842	n:1500000
NOL7   1500000 perm   1267 sec   (1184 perm/sec)   p_kst 1.228000e-03   p_cons 1.803613e-01   p_joint 7.573333e-04

Joint ci ratio: 1.157521e-01	ci left: 7.150028e-04	ci right 8.034864e-04	k: 1145	n:1510000
Cons ci ratio: 6.799962e-03	ci left: 1.797685e-01	ci right 1.809957e-01	k: 272376	n:1510000
KS ci ratio: 9.093475e-02	ci left: 1.173235e-03	ci right 1.285646e-03	k: 1855	n:1510000
NOL7   1510000 perm   1282 sec   (1178 perm/sec)   p_kst 1.228477e-03   p_cons 1.803815e-01   p_joint 7.582781e-04

Joint ci ratio: 1.153001e-01	ci left: 7.160488e-04	ci right 8.042924e-04	k: 1154	n:1520000
Cons ci ratio: 6.777916e-03	ci left: 1.797548e-01	ci right 1.809780e-01	k: 274156	n:1520000
KS ci ratio: 9.069083e-02	ci left: 1.171946e-03	ci right 1.283916e-03	k: 1865	n:1520000
NOL7   1520000 perm   1299 sec   (1170 perm/sec)   p_kst 1.226974e-03   p_cons 1.803658e-01   p_joint 7.592105e-04

Joint ci ratio: 1.150019e-01	ci left: 7.151774e-04	ci right 8.030701e-04	k: 1160	n:1530000
Cons ci ratio: 6.755426e-03	ci left: 1.797701e-01	ci right 1.809893e-01	k: 275980	n:1530000
KS ci ratio: 9.044886e-02	ci left: 1.170674e-03	ci right 1.282209e-03	k: 1875	n:1530000
NOL7   1530000 perm   1314 sec   (1164 perm/sec)   p_kst 1.225490e-03   p_cons 1.803791e-01   p_joint 7.581699e-04

Joint ci ratio: 1.146077e-01	ci left: 7.155790e-04	ci right 8.031992e-04	k: 1168	n:1540000
Cons ci ratio: 6.731931e-03	ci left: 1.798390e-01	ci right 1.810544e-01	k: 277887	n:1540000
KS ci ratio: 9.013707e-02	ci left: 1.171323e-03	ci right 1.282515e-03	k: 1888	n:1540000
NOL7   1540000 perm   1329 sec   (1158 perm/sec)   p_kst 1.225974e-03   p_cons 1.804461e-01   p_joint 7.584416e-04

Joint ci ratio: 1.141690e-01	ci left: 7.166027e-04	ci right 8.039898e-04	k: 1177	n:1550000
Cons ci ratio: 6.710041e-03	ci left: 1.798471e-01	ci right 1.810586e-01	k: 279701	n:1550000
KS ci ratio: 8.987580e-02	ci left: 1.170703e-03	ci right 1.281497e-03	k: 1899	n:1550000
NOL7   1550000 perm   1345 sec   (1152 perm/sec)   p_kst 1.225161e-03   p_cons 1.804523e-01   p_joint 7.593548e-04

Joint ci ratio: 1.137833e-01	ci left: 7.169911e-04	ci right 8.041103e-04	k: 1185	n:1560000
Cons ci ratio: 6.689232e-03	ci left: 1.798167e-01	ci right 1.810242e-01	k: 281455	n:1560000
KS ci ratio: 8.945291e-02	ci left: 1.174478e-03	ci right 1.285079e-03	k: 1917	n:1560000
NOL7   1560000 perm   1361 sec   (1146 perm/sec)   p_kst 1.228846e-03   p_cons 1.804199e-01   p_joint 7.596154e-04

Joint ci ratio: 1.134490e-01	ci left: 7.167562e-04	ci right 8.035739e-04	k: 1192	n:1570000
Cons ci ratio: 6.668889e-03	ci left: 1.797746e-01	ci right 1.809781e-01	k: 283190	n:1570000
KS ci ratio: 8.915127e-02	ci left: 1.175093e-03	ci right 1.285359e-03	k: 1930	n:1570000
NOL7   1570000 perm   1378 sec   (1140 perm/sec)   p_kst 1.229299e-03   p_cons 1.803758e-01   p_joint 7.592357e-04

Joint ci ratio: 1.131176e-01	ci left: 7.165246e-04	ci right 8.030438e-04	k: 1199	n:1580000
Cons ci ratio: 6.647392e-03	ci left: 1.797925e-01	ci right 1.809922e-01	k: 285019	n:1580000
KS ci ratio: 8.882979e-02	ci left: 1.176319e-03	ci right 1.286282e-03	k: 1944	n:1580000
NOL7   1580000 perm   1393 sec   (1134 perm/sec)   p_kst 1.230380e-03   p_cons 1.803918e-01   p_joint 7.588608e-04

Joint ci ratio: 1.126958e-01	ci left: 7.175187e-04	ci right 8.038134e-04	k: 1208	n:1590000
Cons ci ratio: 6.626652e-03	ci left: 1.797856e-01	ci right 1.809816e-01	k: 286809	n:1590000
KS ci ratio: 8.848916e-02	ci left: 1.178146e-03	ci right 1.287835e-03	k: 1959	n:1590000
NOL7   1590000 perm   1409 sec   (1128 perm/sec)   p_kst 1.232075e-03   p_cons 1.803830e-01   p_joint 7.597484e-04

Joint ci ratio: 1.124635e-01	ci left: 7.160712e-04	ci right 8.020025e-04	k: 1213	n:1600000
Cons ci ratio: 6.605839e-03	ci left: 1.797907e-01	ci right 1.809829e-01	k: 288618	n:1600000
KS ci ratio: 8.826434e-02	ci left: 1.176894e-03	ci right 1.286174e-03	k: 1969	n:1600000
NOL7   1600000 perm   1425 sec   (1123 perm/sec)   p_kst 1.230625e-03   p_cons 1.803862e-01   p_joint 7.581250e-04

Joint ci ratio: 1.121407e-01	ci left: 7.158492e-04	ci right 8.014911e-04	k: 1220	n:1610000
Cons ci ratio: 6.585954e-03	ci left: 1.797629e-01	ci right 1.809513e-01	k: 290374	n:1610000
KS ci ratio: 8.804123e-02	ci left: 1.175659e-03	ci right 1.284533e-03	k: 1979	n:1610000
NOL7   1610000 perm   1441 sec   (1117 perm/sec)   p_kst 1.229193e-03   p_cons 1.803565e-01   p_joint 7.577640e-04

Joint ci ratio: 1.118663e-01	ci left: 7.150303e-04	ci right 8.003510e-04	k: 1226	n:1620000
Cons ci ratio: 6.565658e-03	ci left: 1.797619e-01	ci right 1.809466e-01	k: 292173	n:1620000
KS ci ratio: 8.777566e-02	ci left: 1.175646e-03	ci right 1.284174e-03	k: 1991	n:1620000
NOL7   1620000 perm   1457 sec   (1112 perm/sec)   p_kst 1.229012e-03   p_cons 1.803537e-01   p_joint 7.567901e-04

Joint ci ratio: 1.115033e-01	ci left: 7.154145e-04	ci right 8.004859e-04	k: 1234	n:1630000
Cons ci ratio: 6.546351e-03	ci left: 1.797248e-01	ci right 1.809058e-01	k: 293913	n:1630000
KS ci ratio: 8.744696e-02	ci left: 1.177434e-03	ci right 1.285700e-03	k: 2006	n:1630000
NOL7   1630000 perm   1473 sec   (1106 perm/sec)   p_kst 1.230675e-03   p_cons 1.803147e-01   p_joint 7.570552e-04

Joint ci ratio: 1.112335e-01	ci left: 7.146088e-04	ci right 7.993653e-04	k: 1240	n:1640000
Cons ci ratio: 6.527118e-03	ci left: 1.796924e-01	ci right 1.808697e-01	k: 295660	n:1640000
KS ci ratio: 8.725164e-02	ci left: 1.175623e-03	ci right 1.283468e-03	k: 2015	n:1640000
NOL7   1640000 perm   1490 sec   (1101 perm/sec)   p_kst 1.228659e-03   p_cons 1.802805e-01   p_joint 7.560976e-04

Joint ci ratio: 1.105671e-01	ci left: 7.191167e-04	ci right 8.038635e-04	k: 1255	n:1650000
Cons ci ratio: 6.507506e-03	ci left: 1.796852e-01	ci right 1.808589e-01	k: 297448	n:1650000
KS ci ratio: 8.697165e-02	ci left: 1.176205e-03	ci right 1.283740e-03	k: 2028	n:1650000
NOL7   1650000 perm   1506 sec   (1095 perm/sec)   p_kst 1.229091e-03   p_cons 1.802715e-01   p_joint 7.606061e-04

Joint ci ratio: 1.101730e-01	ci left: 7.200567e-04	ci right 8.045923e-04	k: 1264	n:1660000
Cons ci ratio: 6.489062e-03	ci left: 1.796330e-01	ci right 1.808030e-01	k: 299161	n:1660000
KS ci ratio: 8.660946e-02	ci left: 1.179138e-03	ci right 1.286470e-03	k: 2045	n:1660000
NOL7   1660000 perm   1523 sec   (1090 perm/sec)   p_kst 1.231928e-03   p_cons 1.802175e-01   p_joint 7.614458e-04

Joint ci ratio: 1.097831e-01	ci left: 7.209860e-04	ci right 8.053117e-04	k: 1273	n:1670000
Cons ci ratio: 6.468808e-03	ci left: 1.796711e-01	ci right 1.808378e-01	k: 301024	n:1670000
KS ci ratio: 8.633559e-02	ci left: 1.179693e-03	ci right 1.286719e-03	k: 2058	n:1670000
NOL7   1670000 perm   1539 sec   (1085 perm/sec)   p_kst 1.232335e-03   p_cons 1.802539e-01   p_joint 7.622754e-04

Joint ci ratio: 1.094828e-01	ci left: 7.207468e-04	ci right 8.047991e-04	k: 1280	n:1680000
Cons ci ratio: 6.449040e-03	ci left: 1.796951e-01	ci right 1.808583e-01	k: 302864	n:1680000
KS ci ratio: 8.614761e-02	ci left: 1.177913e-03	ci right 1.284533e-03	k: 2067	n:1680000
NOL7   1680000 perm   1556 sec   (1080 perm/sec)   p_kst 1.230357e-03   p_cons 1.802762e-01   p_joint 7.619048e-04

Joint ci ratio: 1.091849e-01	ci left: 7.205108e-04	ci right 8.042922e-04	k: 1287	n:1690000
Cons ci ratio: 6.430959e-03	ci left: 1.796497e-01	ci right 1.808094e-01	k: 304587	n:1690000
KS ci ratio: 8.585743e-02	ci left: 1.179049e-03	ci right 1.285394e-03	k: 2081	n:1690000
NOL7   1690000 perm   1572 sec   (1075 perm/sec)   p_kst 1.231361e-03   p_cons 1.802290e-01   p_joint 7.615385e-04

Joint ci ratio: 1.089315e-01	ci left: 7.197056e-04	ci right 8.031867e-04	k: 1293	n:1700000
Cons ci ratio: 6.410769e-03	ci left: 1.797088e-01	ci right 1.808652e-01	k: 306487	n:1700000
KS ci ratio: 8.567254e-02	ci left: 1.177294e-03	ci right 1.283240e-03	k: 2090	n:1700000
NOL7   1700000 perm   1589 sec   (1070 perm/sec)   p_kst 1.229412e-03   p_cons 1.802865e-01   p_joint 7.605882e-04

Joint ci ratio: 1.088056e-01	ci left: 7.172034e-04	ci right 8.002919e-04	k: 1296	n:1710000
Cons ci ratio: 6.392425e-03	ci left: 1.796908e-01	ci right 1.808437e-01	k: 308256	n:1710000
KS ci ratio: 8.546847e-02	ci left: 1.176132e-03	ci right 1.281709e-03	k: 2100	n:1710000
NOL7   1710000 perm   1606 sec   (1065 perm/sec)   p_kst 1.228070e-03   p_cons 1.802667e-01   p_joint 7.578947e-04

Joint ci ratio: 1.086383e-01	ci left: 7.152959e-04	ci right 7.980279e-04	k: 1300	n:1720000
Cons ci ratio: 6.374050e-03	ci left: 1.796816e-01	ci right 1.808311e-01	k: 310040	n:1720000
KS ci ratio: 8.530632e-02	ci left: 1.173846e-03	ci right 1.279008e-03	k: 2108	n:1720000
NOL7   1720000 perm   1623 sec   (1060 perm/sec)   p_kst 1.225581e-03   p_cons 1.802558e-01   p_joint 7.558140e-04

Joint ci ratio: 1.083887e-01	ci left: 7.145353e-04	ci right 7.969774e-04	k: 1306	n:1730000
Cons ci ratio: 6.355869e-03	ci left: 1.796708e-01	ci right 1.808170e-01	k: 311821	n:1730000
KS ci ratio: 8.510485e-02	ci left: 1.172718e-03	ci right 1.277518e-03	k: 2118	n:1730000
NOL7   1730000 perm   1640 sec   (1055 perm/sec)   p_kst 1.224277e-03   p_cons 1.802434e-01   p_joint 7.549133e-04

Joint ci ratio: 1.081821e-01	ci left: 7.132245e-04	ci right 7.953484e-04	k: 1311	n:1740000
Cons ci ratio: 6.337732e-03	ci left: 1.796653e-01	ci right 1.808082e-01	k: 313611	n:1740000
KS ci ratio: 8.492477e-02	ci left: 1.171040e-03	ci right 1.275459e-03	k: 2127	n:1740000
NOL7   1740000 perm   1657 sec   (1050 perm/sec)   p_kst 1.222414e-03   p_cons 1.802362e-01   p_joint 7.534483e-04

Joint ci ratio: 1.079766e-01	ci left: 7.119288e-04	ci right 7.937380e-04	k: 1316	n:1750000
Cons ci ratio: 6.319688e-03	ci left: 1.796627e-01	ci right 1.808023e-01	k: 315406	n:1750000
KS ci ratio: 8.478557e-02	ci left: 1.168264e-03	ci right 1.272255e-03	k: 2134	n:1750000
NOL7   1750000 perm   1675 sec   (1045 perm/sec)   p_kst 1.219429e-03   p_cons 1.802320e-01   p_joint 7.520000e-04

Joint ci ratio: 1.077315e-01	ci left: 7.112009e-04	ci right 7.927291e-04	k: 1322	n:1760000
Cons ci ratio: 6.302295e-03	ci left: 1.796369e-01	ci right 1.807732e-01	k: 317160	n:1760000
KS ci ratio: 8.456802e-02	ci left: 1.167744e-03	ci right 1.271409e-03	k: 2145	n:1760000
NOL7   1760000 perm   1693 sec   (1040 perm/sec)   p_kst 1.218750e-03   p_cons 1.802045e-01   p_joint 7.511364e-04

Joint ci ratio: 1.070457e-01	ci left: 7.165294e-04	ci right 7.981127e-04	k: 1339	n:1770000
Cons ci ratio: 6.283938e-03	ci left: 1.796634e-01	ci right 1.807964e-01	k: 319006	n:1770000
KS ci ratio: 8.423492e-02	ci left: 1.170548e-03	ci right 1.274033e-03	k: 2162	n:1770000
NOL7   1770000 perm   1710 sec   (1035 perm/sec)   p_kst 1.221469e-03   p_cons 1.802294e-01   p_joint 7.564972e-04

Joint ci ratio: 1.066879e-01	ci left: 7.174251e-04	ci right 7.988202e-04	k: 1348	n:1780000
Cons ci ratio: 6.265777e-03	ci left: 1.796878e-01	ci right 1.808177e-01	k: 320849	n:1780000
KS ci ratio: 8.390572e-02	ci left: 1.173322e-03	ci right 1.276627e-03	k: 2179	n:1780000
NOL7   1780000 perm   1728 sec   (1030 perm/sec)   p_kst 1.224157e-03   p_cons 1.802522e-01   p_joint 7.573034e-04

Joint ci ratio: 1.063338e-01	ci left: 7.183111e-04	ci right 7.995193e-04	k: 1357	n:1790000
Cons ci ratio: 6.248351e-03	ci left: 1.796846e-01	ci right 1.808114e-01	k: 322643	n:1790000
KS ci ratio: 8.367575e-02	ci left: 1.173330e-03	ci right 1.276339e-03	k: 2191	n:1790000
NOL7   1790000 perm   1746 sec   (1025 perm/sec)   p_kst 1.224022e-03   p_cons 1.802475e-01   p_joint 7.581006e-04

Joint ci ratio: 1.059831e-01	ci left: 7.191877e-04	ci right 8.002102e-04	k: 1366	n:1800000
Cons ci ratio: 6.231386e-03	ci left: 1.796665e-01	ci right 1.807901e-01	k: 324410	n:1800000
KS ci ratio: 8.337194e-02	ci left: 1.175515e-03	ci right 1.278323e-03	k: 2207	n:1800000
NOL7   1800000 perm   1763 sec   (1021 perm/sec)   p_kst 1.226111e-03   p_cons 1.802278e-01   p_joint 7.588889e-04

Joint ci ratio: 1.057513e-01	ci left: 7.184415e-04	ci right 7.991918e-04	k: 1372	n:1810000
Cons ci ratio: 6.213838e-03	ci left: 1.796828e-01	ci right 1.808033e-01	k: 326239	n:1810000
KS ci ratio: 8.333444e-02	ci left: 1.170102e-03	ci right 1.272388e-03	k: 2209	n:1810000
NOL7   1810000 perm   1782 sec   (1016 perm/sec)   p_kst 1.220442e-03   p_cons 1.802425e-01   p_joint 7.580110e-04

Joint ci ratio: 1.055594e-01	ci left: 7.171686e-04	ci right 7.976205e-04	k: 1377	n:1820000
Cons ci ratio: 6.196749e-03	ci left: 1.796841e-01	ci right 1.808015e-01	k: 328041	n:1820000
KS ci ratio: 8.316534e-02	ci left: 1.168515e-03	ci right 1.270445e-03	k: 2218	n:1820000
NOL7   1820000 perm   1799 sec   (1011 perm/sec)   p_kst 1.218681e-03   p_cons 1.802423e-01   p_joint 7.565934e-04

Joint ci ratio: 1.053685e-01	ci left: 7.159098e-04	ci right 7.960662e-04	k: 1382	n:1830000
Cons ci ratio: 6.180165e-03	ci left: 1.796679e-01	ci right 1.807823e-01	k: 329811	n:1830000
KS ci ratio: 8.307197e-02	ci left: 1.164805e-03	ci right 1.266292e-03	k: 2223	n:1830000
NOL7   1830000 perm   1818 sec   (1007 perm/sec)   p_kst 1.214754e-03   p_cons 1.802246e-01   p_joint 7.551913e-04

Joint ci ratio: 1.052925e-01	ci left: 7.130773e-04	ci right 7.928554e-04	k: 1384	n:1840000
Cons ci ratio: 6.163657e-03	ci left: 1.796546e-01	ci right 1.807659e-01	k: 331586	n:1840000
KS ci ratio: 8.292305e-02	ci left: 1.162732e-03	ci right 1.263848e-03	k: 2231	n:1840000
NOL7   1840000 perm   1836 sec   (1002 perm/sec)   p_kst 1.212500e-03   p_cons 1.802098e-01   p_joint 7.521739e-04

Joint ci ratio: 1.050275e-01	ci left: 7.129070e-04	ci right 7.924530e-04	k: 1391	n:1850000
Cons ci ratio: 6.147225e-03	ci left: 1.796442e-01	ci right 1.807525e-01	k: 333366	n:1850000
KS ci ratio: 8.270104e-02	ci left: 1.162800e-03	ci right 1.263637e-03	k: 2243	n:1850000
NOL7   1850000 perm   1853 sec   (998 perm/sec)   p_kst 1.212432e-03   p_cons 1.801978e-01   p_joint 7.518919e-04

Joint ci ratio: 1.047269e-01	ci left: 7.132625e-04	ci right 7.926063e-04	k: 1399	n:1860000
Cons ci ratio: 6.129707e-03	ci left: 1.796924e-01	ci right 1.807978e-01	k: 335255	n:1860000
KS ci ratio: 8.248080e-02	ci left: 1.162866e-03	ci right 1.263428e-03	k: 2255	n:1860000
NOL7   1860000 perm   1872 sec   (994 perm/sec)   p_kst 1.212366e-03   p_cons 1.802446e-01   p_joint 7.521505e-04

Joint ci ratio: 1.045778e-01	ci left: 7.115313e-04	ci right 7.905629e-04	k: 1403	n:1870000
Cons ci ratio: 6.113566e-03	ci left: 1.796809e-01	ci right 1.807832e-01	k: 337033	n:1870000
KS ci ratio: 8.231684e-02	ci left: 1.161361e-03	ci right 1.261584e-03	k: 2264	n:1870000
NOL7   1870000 perm   1890 sec   (989 perm/sec)   p_kst 1.210695e-03   p_cons 1.802316e-01   p_joint 7.502674e-04

Joint ci ratio: 1.043551e-01	ci left: 7.108546e-04	ci right 7.896326e-04	k: 1409	n:1880000
Cons ci ratio: 6.098002e-03	ci left: 1.796476e-01	ci right 1.807470e-01	k: 338770	n:1880000
KS ci ratio: 8.215385e-02	ci left: 1.159873e-03	ci right 1.259759e-03	k: 2273	n:1880000
NOL7   1880000 perm   1908 sec   (985 perm/sec)   p_kst 1.209043e-03   p_cons 1.801968e-01   p_joint 7.494681e-04

Joint ci ratio: 1.040970e-01	ci left: 7.107006e-04	ci right 7.892549e-04	k: 1416	n:1890000
Cons ci ratio: 6.082033e-03	ci left: 1.796401e-01	ci right 1.807365e-01	k: 340555	n:1890000
KS ci ratio: 8.200981e-02	ci left: 1.157882e-03	ci right 1.257413e-03	k: 2281	n:1890000
NOL7   1890000 perm   1926 sec   (981 perm/sec)   p_kst 1.206878e-03   p_cons 1.801878e-01   p_joint 7.492063e-04

Joint ci ratio: 1.036589e-01	ci left: 7.131118e-04	ci right 7.915807e-04	k: 1428	n:1900000
Cons ci ratio: 6.066092e-03	ci left: 1.796374e-01	ci right 1.807309e-01	k: 342349	n:1900000
KS ci ratio: 8.168814e-02	ci left: 1.161067e-03	ci right 1.260463e-03	k: 2299	n:1900000
NOL7   1900000 perm   1945 sec   (977 perm/sec)   p_kst 1.210000e-03   p_cons 1.801837e-01   p_joint 7.515789e-04

Joint ci ratio: 1.034781e-01	ci left: 7.119283e-04	ci right 7.901219e-04	k: 1433	n:1910000
Cons ci ratio: 6.050275e-03	ci left: 1.796347e-01	ci right 1.807254e-01	k: 344143	n:1910000
KS ci ratio: 8.145824e-02	ci left: 1.161656e-03	ci right 1.260809e-03	k: 2312	n:1910000
NOL7   1910000 perm   1963 sec   (973 perm/sec)   p_kst 1.210471e-03   p_cons 1.801796e-01   p_joint 7.502618e-04

Joint ci ratio: 1.032623e-01	ci left: 7.112645e-04	ci right 7.892124e-04	k: 1439	n:1920000
Cons ci ratio: 6.034763e-03	ci left: 1.796233e-01	ci right 1.807110e-01	k: 345920	n:1920000
KS ci ratio: 8.124775e-02	ci left: 1.161729e-03	ci right 1.260619e-03	k: 2324	n:1920000
NOL7   1920000 perm   1982 sec   (969 perm/sec)   p_kst 1.210417e-03   p_cons 1.801667e-01   p_joint 7.494792e-04

Joint ci ratio: 1.028346e-01	ci left: 7.136366e-04	ci right 7.915010e-04	k: 1451	n:1930000
Cons ci ratio: 6.019284e-03	ci left: 1.796160e-01	ci right 1.807010e-01	k: 347705	n:1930000
KS ci ratio: 8.100420e-02	ci left: 1.162816e-03	ci right 1.261488e-03	k: 2338	n:1930000
NOL7   1930000 perm   2001 sec   (965 perm/sec)   p_kst 1.211399e-03   p_cons 1.801580e-01   p_joint 7.518135e-04

Joint ci ratio: 1.026933e-01	ci left: 7.119669e-04	ci right 7.895360e-04	k: 1455	n:1940000
Cons ci ratio: 6.003505e-03	ci left: 1.796295e-01	ci right 1.807117e-01	k: 349530	n:1940000
KS ci ratio: 8.065992e-02	ci left: 1.166923e-03	ci right 1.265503e-03	k: 2358	n:1940000
NOL7   1940000 perm   2020 sec   (960 perm/sec)   p_kst 1.215464e-03   p_cons 1.801701e-01   p_joint 7.500000e-04

Joint ci ratio: 1.022726e-01	ci left: 7.143119e-04	ci right 7.917985e-04	k: 1467	n:1950000
Cons ci ratio: 5.988078e-03	ci left: 1.796316e-01	ci right 1.807109e-01	k: 351333	n:1950000
KS ci ratio: 8.037074e-02	ci left: 1.169481e-03	ci right 1.267907e-03	k: 2375	n:1950000
NOL7   1950000 perm   2039 sec   (956 perm/sec)   p_kst 1.217949e-03   p_cons 1.801708e-01   p_joint 7.523077e-04

Joint ci ratio: 1.019951e-01	ci left: 7.146449e-04	ci right 7.919446e-04	k: 1475	n:1960000
Cons ci ratio: 5.972533e-03	ci left: 1.796453e-01	ci right 1.807220e-01	k: 353159	n:1960000
KS ci ratio: 8.011819e-02	ci left: 1.171014e-03	ci right 1.269245e-03	k: 2390	n:1960000
NOL7   1960000 perm   2058 sec   (952 perm/sec)   p_kst 1.219388e-03   p_cons 1.801832e-01   p_joint 7.525510e-04

Joint ci ratio: 1.017541e-01	ci left: 7.144800e-04	ci right 7.915684e-04	k: 1482	n:1970000
Cons ci ratio: 5.957824e-03	ci left: 1.796234e-01	ci right 1.806973e-01	k: 354915	n:1970000
KS ci ratio: 7.983478e-02	ci left: 1.173527e-03	ci right 1.271604e-03	k: 2407	n:1970000
NOL7   1970000 perm   2077 sec   (948 perm/sec)   p_kst 1.221827e-03   p_cons 1.801599e-01   p_joint 7.522843e-04

Joint ci ratio: 1.015489e-01	ci left: 7.138248e-04	ci right 7.906779e-04	k: 1488	n:1980000
Cons ci ratio: 5.943061e-03	ci left: 1.796099e-01	ci right 1.806810e-01	k: 356687	n:1980000
KS ci ratio: 7.963660e-02	ci left: 1.173540e-03	ci right 1.271363e-03	k: 2419	n:1980000
NOL7   1980000 perm   2097 sec   (944 perm/sec)   p_kst 1.221717e-03   p_cons 1.801449e-01   p_joint 7.515152e-04

Joint ci ratio: 1.012772e-01	ci left: 7.141558e-04	ci right 7.908267e-04	k: 1496	n:1990000
Cons ci ratio: 5.928306e-03	ci left: 1.796015e-01	ci right 1.806698e-01	k: 358469	n:1990000
KS ci ratio: 7.940721e-02	ci left: 1.174538e-03	ci right 1.272149e-03	k: 2433	n:1990000
NOL7   1990000 perm   2116 sec   (940 perm/sec)   p_kst 1.222613e-03   p_cons 1.801352e-01   p_joint 7.517588e-04

Joint ci ratio: 1.008736e-01	ci left: 7.164334e-04	ci right 7.930241e-04	k: 1508	n:2000000
Cons ci ratio: 5.913500e-03	ci left: 1.796011e-01	ci right 1.806668e-01	k: 360267	n:2000000
KS ci ratio: 7.916359e-02	ci left: 1.176016e-03	ci right 1.273437e-03	k: 2448	n:2000000
NOL7   2000000 perm   2136 sec   (936 perm/sec)   p_kst 1.224000e-03   p_cons 1.801335e-01   p_joint 7.540000e-04

Joint ci ratio: 1.007736e-01	ci left: 7.143240e-04	ci right 7.906089e-04	k: 1511	n:2010000
Cons ci ratio: 5.899321e-03	ci left: 1.795749e-01	ci right 1.806379e-01	k: 362013	n:2010000
KS ci ratio: 7.901860e-02	ci left: 1.174555e-03	ci right 1.271668e-03	k: 2457	n:2010000
NOL7   2010000 perm   2156 sec   (932 perm/sec)   p_kst 1.222388e-03   p_cons 1.801060e-01   p_joint 7.517413e-04

Joint ci ratio: 1.006074e-01	ci left: 7.132006e-04	ci right 7.892326e-04	k: 1516	n:2020000
Cons ci ratio: 5.885294e-03	ci left: 1.795466e-01	ci right 1.806068e-01	k: 363754	n:2020000
KS ci ratio: 7.877853e-02	ci left: 1.176019e-03	ci right 1.272945e-03	k: 2472	n:2020000
NOL7   2020000 perm   2175 sec   (929 perm/sec)   p_kst 1.223762e-03   p_cons 1.800762e-01   p_joint 7.504950e-04

Joint ci ratio: 1.003103e-01	ci left: 7.140094e-04	ci right 7.898896e-04	k: 1525	n:2030000
Cons ci ratio: 5.870827e-03	ci left: 1.795455e-01	ci right 1.806032e-01	k: 365550	n:2030000
KS ci ratio: 7.860394e-02	ci left: 1.175538e-03	ci right 1.272199e-03	k: 2483	n:2030000
NOL7   2030000 perm   2195 sec   (925 perm/sec)   p_kst 1.223153e-03   p_cons 1.800739e-01   p_joint 7.512315e-04

Joint ci ratio: 1.001464e-01	ci left: 7.128989e-04	ci right 7.885300e-04	k: 1530	n:2040000
Cons ci ratio: 5.856300e-03	ci left: 1.795528e-01	ci right 1.806079e-01	k: 367363	n:2040000
KS ci ratio: 7.847775e-02	ci left: 1.173620e-03	ci right 1.269962e-03	k: 2491	n:2040000
NOL7   2040000 perm   2214 sec   (921 perm/sec)   p_kst 1.221078e-03   p_cons 1.800799e-01   p_joint 7.500000e-04

Joint ci ratio: 9.998333e-02	ci left: 7.117993e-04	ci right 7.871836e-04	k: 1535	n:2050000
Cons ci ratio: 5.841708e-03	ci left: 1.795688e-01	ci right 1.806214e-01	k: 369194	n:2050000
KS ci ratio: 7.827383e-02	ci left: 1.174112e-03	ci right 1.270232e-03	k: 2504	n:2050000
NOL7   2050000 perm   2234 sec   (918 perm/sec)   p_kst 1.221463e-03   p_cons 1.800946e-01   p_joint 7.487805e-04

Outputting figure to mutsig2_images.part000000000116/NOL7.2_806_2050000_0.0012215_0.18009_0.00074878.png
                gene_name: NOL7
               theta_stop: 0.100 
                    nperm: 2050000 
                     p_ks: 0.0012 
        ci_ks_bounds_left: 0.0012 
       ci_ks_bounds_right: 0.0013 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.00075 
     ci_joint_bounds_left: 0.00071 
    ci_joint_bounds_right: 0.00079 

Current progress: 81 percent done.
NOL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.695711e-02	ci left: 8.351090e-01	ci right 8.494910e-01	k: 8424	n:10000
KS ci ratio: 2.465674e-02	ci left: 7.075543e-01	ci right 7.253194e-01	k: 7165	n:10000
NOL9   10000 perm   2 sec   (5906 perm/sec)   p_kst 7.165000e-01   p_cons 8.424000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOL9.2_2157_10000_0.7165_0.8424_1.png
                gene_name: NOL9
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
NOMO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.212039e-02	ci left: 9.070994e-01	ci right 9.182588e-01	k: 9128	n:10000
KS ci ratio: 3.721421e-02	ci left: 5.160570e-01	ci right 5.357279e-01	k: 5259	n:10000
NOMO2   10000 perm   2 sec   (5039 perm/sec)   p_kst 5.259000e-01   p_cons 9.128000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000116/NOMO2.2_3936_10000_0.5259_0.9128_1.png
                gene_name: NOMO2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
NONO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.017574e-03	ci left: 9.875220e-01	ci right 9.915852e-01	k: 9897	n:10000
Cons ci ratio: 4.377898e-02	ci left: 4.351271e-01	ci right 4.547050e-01	k: 4449	n:10000
KS ci ratio: 2.710561e-02	ci left: 6.672307e-01	ci right 6.856665e-01	k: 6765	n:10000
NONO   10000 perm   2 sec   (6144 perm/sec)   p_kst 6.765000e-01   p_cons 4.449000e-01   p_joint 9.897000e-01

Outputting figure to mutsig2_images.part000000000116/NONO.2_1456_10000_0.6765_0.4449_0.9897.png
                gene_name: NONO
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 86 percent done.
NOP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.348272e-02	ci left: 7.271416e-01	ci right 7.445209e-01	k: 7359	n:10000
Cons ci ratio: 1.216596e-02	ci left: 9.064824e-01	ci right 9.176761e-01	k: 9122	n:10000
KS ci ratio: 4.274819e-02	ci left: 4.469008e-01	ci right 4.665244e-01	k: 4567	n:10000
NOP2   10000 perm   2 sec   (5603 perm/sec)   p_kst 4.567000e-01   p_cons 9.122000e-01   p_joint 7.359000e-01

Outputting figure to mutsig2_images.part000000000116/NOP2.2_2487_10000_0.4567_0.9122_0.7359.png
                gene_name: NOP2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 88 percent done.
NOS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.067200e-02	ci left: 2.854779e-01	ci right 3.034419e-01	k: 2944	n:10000
Cons ci ratio: 9.187494e-02	ci left: 1.468790e-01	ci right 1.611232e-01	k: 1539	n:10000
KS ci ratio: 4.634174e-02	ci left: 4.073115e-01	ci right 4.267369e-01	k: 4170	n:10000
NOS3   10000 perm   2 sec   (4823 perm/sec)   p_kst 4.170000e-01   p_cons 1.539000e-01   p_joint 2.944000e-01

Outputting figure to mutsig2_images.part000000000116/NOS3.2_3998_10000_0.417_0.1539_0.2944.png
                gene_name: NOS3
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 89 percent done.
NOTCH2NL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.152048e-03	ci left: 9.867570e-01	ci right 9.909509e-01	k: 9890	n:10000
Cons ci ratio: 3.267405e-02	ci left: 5.802852e-01	ci right 5.996624e-01	k: 5900	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
NOTCH2NL   10000 perm   1 sec   (6682 perm/sec)   p_kst 1   p_cons 5.900000e-01   p_joint 9.890000e-01

Outputting figure to mutsig2_images.part000000000116/NOTCH2NL.2_727_10000_1_0.59_0.989.png
                gene_name: NOTCH2NL
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 91 percent done.
NOV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.356810e-02	ci left: 2.666610e-01	ci right 2.842700e-01	k: 2754	n:10000
Cons ci ratio: 3.314893e-02	ci left: 5.732631e-01	ci right 5.926885e-01	k: 5830	n:10000
KS ci ratio: 6.545109e-02	ci left: 2.552813e-01	ci right 2.726564e-01	k: 2639	n:10000
NOV   10000 perm   2 sec   (6387 perm/sec)   p_kst 2.639000e-01   p_cons 5.830000e-01   p_joint 2.754000e-01

Outputting figure to mutsig2_images.part000000000116/NOV.2_1094_10000_0.2639_0.583_0.2754.png
                gene_name: NOV
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 93 percent done.
NPTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.093584e-02	ci left: 2.836945e-01	ci right 3.016265e-01	k: 2926	n:10000
Cons ci ratio: 5.201841e-02	ci left: 3.526716e-01	ci right 3.716088e-01	k: 3621	n:10000
KS ci ratio: 9.090017e-02	ci left: 1.496259e-01	ci right 1.639746e-01	k: 1567	n:10000
NPTN   10000 perm   2 sec   (6274 perm/sec)   p_kst 1.567000e-01   p_cons 3.621000e-01   p_joint 2.926000e-01

Outputting figure to mutsig2_images.part000000000116/NPTN.2_1229_10000_0.1567_0.3621_0.2926.png
                gene_name: NPTN
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 95 percent done.
NPTX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.109680e-02	ci left: 3.609240e-01	ci right 3.799515e-01	k: 3704	n:10000
Cons ci ratio: 2.292716e-01	ci left: 2.513779e-02	ci right 3.174074e-02	k: 283	n:10000
KS ci ratio: 3.776252e-02	ci left: 5.087527e-01	ci right 5.284364e-01	k: 5186	n:10000
NPTX2   10000 perm   2 sec   (6308 perm/sec)   p_kst 5.186000e-01   p_cons 2.830000e-02   p_joint 3.704000e-01

Joint ci ratio: 1.774468e-02	ci left: 7.029517e-01	ci right 7.155874e-01	k: 14186	n:20000
Cons ci ratio: 1.603879e-01	ci left: 2.666999e-02	ci right 3.136827e-02	k: 579	n:20000
KS ci ratio: 2.697807e-02	ci left: 5.065465e-01	ci right 5.204496e-01	k: 10270	n:20000
NPTX2   20000 perm   4 sec   (5451 perm/sec)   p_kst 5.135000e-01   p_cons 2.895000e-02   p_joint 7.093000e-01

Joint ci ratio: 2.916411e-02	ci left: 3.703482e-01	ci right 3.813425e-01	k: 11275	n:30000
Cons ci ratio: 1.286161e-01	ci left: 2.809861e-02	ci right 3.199310e-02	k: 900	n:30000
KS ci ratio: 2.202509e-02	ci left: 5.078931e-01	ci right 5.192376e-01	k: 15407	n:30000
NPTX2   30000 perm   6 sec   (5096 perm/sec)   p_kst 5.135667e-01   p_cons 3.000000e-02   p_joint 3.758333e-01

Joint ci ratio: 2.585498e-02	ci left: 3.602047e-01	ci right 3.696649e-01	k: 14597	n:40000
Cons ci ratio: 1.111628e-01	ci left: 2.847158e-02	ci right 3.184708e-02	k: 1205	n:40000
KS ci ratio: 1.910763e-02	ci left: 5.077884e-01	ci right 5.176098e-01	k: 20508	n:40000
NPTX2   40000 perm   8 sec   (4944 perm/sec)   p_kst 5.127000e-01   p_cons 3.012500e-02   p_joint 3.649250e-01

Joint ci ratio: 2.112143e-02	ci left: 4.035679e-01	ci right 4.122028e-01	k: 20394	n:50000
Cons ci ratio: 1.007264e-01	ci left: 2.791720e-02	ci right 3.089777e-02	k: 1469	n:50000
KS ci ratio: 1.713297e-02	ci left: 5.070680e-01	ci right 5.158507e-01	k: 25573	n:50000
NPTX2   50000 perm   10 sec   (4811 perm/sec)   p_kst 5.114600e-01   p_cons 2.938000e-02   p_joint 4.078800e-01

Joint ci ratio: 2.324316e-02	ci left: 3.178463e-01	ci right 3.253376e-01	k: 19295	n:60000
Cons ci ratio: 9.173628e-02	ci left: 2.817687e-02	ci right 3.090222e-02	k: 1771	n:60000
KS ci ratio: 1.562754e-02	ci left: 5.078582e-01	ci right 5.158740e-01	k: 30712	n:60000
NPTX2   60000 perm   13 sec   (4670 perm/sec)   p_kst 5.118667e-01   p_cons 2.951667e-02   p_joint 3.215833e-01

Outputting figure to mutsig2_images.part000000000116/NPTX2.2_1316_60000_0.51187_0.029517_0.32158.png
                gene_name: NPTX2
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 96 percent done.
NPTXR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.557477e-02	ci left: 8.568193e-01	ci right 8.703681e-01	k: 8637	n:10000
Cons ci ratio: 1.885064e-02	ci left: 8.044048e-01	ci right 8.198129e-01	k: 8122	n:10000
KS ci ratio: 1.038047e-01	ci left: 1.182847e-01	ci right 1.313348e-01	k: 1247	n:10000
NPTXR   10000 perm   2 sec   (6129 perm/sec)   p_kst 1.247000e-01   p_cons 8.122000e-01   p_joint 8.637000e-01

Joint ci ratio: 1.208225e-02	ci left: 8.351993e-01	ci right 8.454016e-01	k: 16807	n:20000
Cons ci ratio: 1.330065e-02	ci left: 8.073742e-01	ci right 8.182347e-01	k: 16257	n:20000
KS ci ratio: 7.216866e-02	ci left: 1.238914e-01	ci right 1.332169e-01	k: 2570	n:20000
NPTXR   20000 perm   4 sec   (5375 perm/sec)   p_kst 1.285000e-01   p_cons 8.128500e-01   p_joint 8.403500e-01

Outputting figure to mutsig2_images.part000000000116/NPTXR.2_1523_20000_0.1285_0.81285_0.84035.png
                gene_name: NPTXR
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 98 percent done.
NPVF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.348773e-02	ci left: 4.384192e-01	ci right 4.580110e-01	k: 4482	n:10000
Cons ci ratio: 6.052633e-02	ci left: 2.864688e-01	ci right 3.044505e-01	k: 2954	n:10000
KS ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
NPVF   10000 perm   1 sec   (6725 perm/sec)   p_kst 3.267000e-01   p_cons 2.954000e-01   p_joint 4.482000e-01

Outputting figure to mutsig2_images.part000000000116/NPVF.2_603_10000_0.3267_0.2954_0.4482.png
                gene_name: NPVF
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000116
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 116 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9894040: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000117> was used as the working directory.
Started at Sat Oct  6 00:21:25 2012
Results reported at Sat Oct  6 03:13:36 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000117.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000117.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 117  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000117.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10315.46 sec.
    Max Memory :      3567 MB
    Max Swap   :      6010 MB

    Max Processes  :         7
    Max Threads    :        72

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
117
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 117
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 117: processing genes 10458 - 10548
Calculating significance of each gene.
Using projection method.
10458	NPY	4.857881e-02
10459	NPY1R	4.491257e-02
10460	NPY2R	1.599677e-02
10461	NPY5R	5.236777e-01
10462	NQO1	4.629836e-01
10463	NQO2	4.927954e-01
10464	NR0B1	3.586135e-01
10465	NR0B2	1
10466	NR1D1	3.473693e-01
10467	NR1D2	2.650513e-01
10468	NR1H2	1
10469	NR1H3	1.958692e-01
10470	NR1H4	4.925431e-01
10471	NR1I2	5.615643e-01
10472	NR1I3	3.995111e-01
10473	NR2C1	4.576787e-01
10474	NR2C2	2.883908e-01
10475	NR2C2AP	1
10476	NR2E1	6.964547e-01
10477	NR2E3	2.485784e-01
10478	NR2F1	5.614337e-01
10479	NR2F2	3.573197e-02
10480	NR2F6	8.268216e-01
10481	NR3C1	8.164647e-01
10482	NR3C2	9.151064e-03
10483	NR4A1	6.971311e-01
10484	NR4A2	7.452959e-02
10485	NR4A3	5.622250e-01
10486	NR5A1	1
10487	NR5A2	7.421328e-01
10488	NR6A1	3.475969e-01
10489	NRAP	6.258232e-01
10490	NRARP	1
10491	NRAS	0
10492	NRBF2	2.368415e-01
10493	NRBP1	2.389377e-01
10494	NRBP2	1.714599e-01
10495	NRCAM	4.601697e-01
10496	NRD1	7.350096e-01
10497	NRF1	3.903863e-01
In gene NRG1 the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 3073    n = 1	mu =   4.60e-07
10498	NRG1	7.595985e-04
10499	NRG2	8.823432e-02
10500	NRG3	1.287465e-01
10501	NRG4	1.866408e-01
10502	NRGN	1
10503	NRIP1	3.728087e-01
10504	NRIP2	1
10505	NRIP3	5.567395e-01
10506	NRK	2.429341e-01
10507	NRL	1
10508	NRM	3.285387e-01
10509	NRN1	1
10510	NRN1L	8.651989e-02
10511	NRP1	9.717416e-01
10512	NRP2	3.504166e-01
10513	NRSN1	2.100961e-01
10514	NRSN2	5.645885e-01
10515	NRTN	1
10516	NRXN1	1.158725e-05
10517	NRXN2	8.670027e-01
10518	NRXN3	9.069364e-05
10519	NSA2	1
10520	NSD1	9.167092e-01
10521	NSDHL	4.632863e-01
10522	NSF	7.057959e-01
10523	NSFL1C	4.084244e-02
10524	NSL1	4.988565e-01
10525	NSMAF	9.454912e-01
10526	NSMCE1	8.290411e-01
10527	NSMCE2	1
10528	NSMCE4A	5.387183e-01
10529	NSUN2	1.043202e-01
10530	NSUN3	1.235721e-01
10531	NSUN4	3.534479e-01
10532	NSUN5	1
10533	NSUN6	6.951606e-01
10534	NSUN7	8.909184e-01
10535	NT5C	1
10536	NT5C1A	8.476173e-01
10537	NT5C1B	1.639030e-02
10538	NT5C2	1.685790e-01
10539	NT5C3	3.595698e-01
10540	NT5C3L	3.534772e-02
10541	NT5DC1	8.811848e-01
10542	NT5DC2	1
10543	NT5DC3	6.892396e-01
10544	NT5E	4.750634e-01
10545	NT5M	4.147103e-01
10546	NTAN1	1.419139e-01
10547	NTF3	7.339832e-01
10548	NTF4	1
Done

Running MutSig 2:
Scatter job 117: processing genes 10458 - 10548
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NRXN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.180661e-01	ci left: 2.787955e-02	ci right 3.479702e-02	k: 312	n:10000
Cons ci ratio: 9.671176e-02	ci left: 1.342342e-01	ci right 1.479756e-01	k: 1410	n:10000
KS ci ratio: 3.026288e-01	ci left: 1.400230e-02	ci right 1.908497e-02	k: 164	n:10000
NRXN1   10000 perm   2 sec   (4133 perm/sec)   p_kst 1.640000e-02   p_cons 1.410000e-01   p_joint 3.120000e-02

Joint ci ratio: 2.209035e-01	ci left: 1.378643e-02	ci right 1.725651e-02	k: 309	n:20000
Cons ci ratio: 7.257410e-02	ci left: 1.226609e-01	ci right 1.319478e-01	k: 2545	n:20000
KS ci ratio: 2.160014e-01	ci left: 1.444865e-02	ci right 1.799402e-02	k: 323	n:20000
NRXN1   20000 perm   7 sec   (2713 perm/sec)   p_kst 1.615000e-02   p_cons 1.272500e-01   p_joint 1.545000e-02

Joint ci ratio: 2.183043e-01	ci left: 9.472069e-03	ci right 1.182415e-02	k: 318	n:30000
Cons ci ratio: 5.921245e-02	ci left: 1.236795e-01	ci right 1.312595e-01	k: 3823	n:30000
KS ci ratio: 1.771081e-01	ci left: 1.464237e-02	ci right 1.751912e-02	k: 481	n:30000
NRXN1   30000 perm   10 sec   (2922 perm/sec)   p_kst 1.603333e-02   p_cons 1.274333e-01   p_joint 1.060000e-02

Joint ci ratio: 1.988155e-01	ci left: 8.667670e-03	ci right 1.060452e-02	k: 384	n:40000
Cons ci ratio: 5.118572e-02	ci left: 1.245922e-01	ci right 1.311619e-01	k: 5114	n:40000
KS ci ratio: 1.522609e-01	ci left: 1.505773e-02	ci right 1.756320e-02	k: 651	n:40000
NRXN1   40000 perm   13 sec   (3026 perm/sec)   p_kst 1.627500e-02   p_cons 1.278500e-01   p_joint 9.600000e-03

Joint ci ratio: 1.623882e-01	ci left: 1.058390e-02	ci right 1.247345e-02	k: 575	n:50000
Cons ci ratio: 4.576044e-02	ci left: 1.250437e-01	ci right 1.309196e-01	k: 6398	n:50000
KS ci ratio: 1.366990e-01	ci left: 1.507294e-02	ci right 1.730374e-02	k: 808	n:50000
NRXN1   50000 perm   16 sec   (3089 perm/sec)   p_kst 1.616000e-02   p_cons 1.279600e-01   p_joint 1.150000e-02

Joint ci ratio: 1.334184e-01	ci left: 1.323629e-02	ci right 1.514446e-02	k: 850	n:60000
Cons ci ratio: 4.179777e-02	ci left: 1.251713e-01	ci right 1.305314e-01	k: 7670	n:60000
KS ci ratio: 1.254338e-01	ci left: 1.501114e-02	ci right 1.703607e-02	k: 960	n:60000
NRXN1   60000 perm   19 sec   (3120 perm/sec)   p_kst 1.600000e-02   p_cons 1.278333e-01   p_joint 1.416667e-02

Joint ci ratio: 1.249224e-01	ci left: 1.300422e-02	ci right 1.475070e-02	k: 970	n:70000
Cons ci ratio: 3.887049e-02	ci left: 1.243859e-01	ci right 1.293308e-01	k: 8879	n:70000
KS ci ratio: 1.167214e-01	ci left: 1.493081e-02	ci right 1.679535e-02	k: 1109	n:70000
NRXN1   70000 perm   22 sec   (3135 perm/sec)   p_kst 1.584286e-02   p_cons 1.268429e-01   p_joint 1.385714e-02

Joint ci ratio: 1.135145e-01	ci left: 1.385312e-02	ci right 1.553234e-02	k: 1174	n:80000
Cons ci ratio: 3.638791e-02	ci left: 1.243775e-01	ci right 1.289996e-01	k: 10134	n:80000
KS ci ratio: 1.089030e-01	ci left: 1.506886e-02	ci right 1.681650e-02	k: 1274	n:80000
NRXN1   80000 perm   25 sec   (3138 perm/sec)   p_kst 1.592500e-02   p_cons 1.266750e-01   p_joint 1.467500e-02

Joint ci ratio: 1.102353e-01	ci left: 1.309121e-02	ci right 1.462924e-02	k: 1246	n:90000
Cons ci ratio: 3.432216e-02	ci left: 1.244120e-01	ci right 1.287677e-01	k: 11392	n:90000
KS ci ratio: 1.017550e-01	ci left: 1.539612e-02	ci right 1.705750e-02	k: 1459	n:90000
NRXN1   90000 perm   29 sec   (3100 perm/sec)   p_kst 1.621111e-02   p_cons 1.265778e-01   p_joint 1.384444e-02

Joint ci ratio: 1.103128e-01	ci left: 1.178165e-02	ci right 1.316684e-02	k: 1246	n:100000
Cons ci ratio: 3.258282e-02	ci left: 1.243761e-01	ci right 1.285056e-01	k: 12643	n:100000
KS ci ratio: 9.921642e-02	ci left: 1.460686e-02	ci right 1.614144e-02	k: 1536	n:100000
NRXN1   100000 perm   32 sec   (3090 perm/sec)   p_kst 1.536000e-02   p_cons 1.264300e-01   p_joint 1.246000e-02

Joint ci ratio: 1.069580e-01	ci left: 1.141799e-02	ci right 1.271702e-02	k: 1326	n:110000
Cons ci ratio: 3.110287e-02	ci left: 1.242158e-01	ci right 1.281494e-01	k: 13879	n:110000
KS ci ratio: 9.464753e-02	ci left: 1.462730e-02	ci right 1.608933e-02	k: 1688	n:110000
NRXN1   110000 perm   36 sec   (3079 perm/sec)   p_kst 1.534545e-02   p_cons 1.261727e-01   p_joint 1.205455e-02

Joint ci ratio: 9.219458e-02	ci left: 1.415695e-02	ci right 1.553331e-02	k: 1780	n:120000
Cons ci ratio: 2.974819e-02	ci left: 1.245247e-01	ci right 1.282933e-01	k: 15168	n:120000
KS ci ratio: 8.857846e-02	ci left: 1.534653e-02	ci right 1.677700e-02	k: 1926	n:120000
NRXN1   120000 perm   39 sec   (3064 perm/sec)   p_kst 1.605000e-02   p_cons 1.264000e-01   p_joint 1.483333e-02

Outputting figure to mutsig2_images.part000000000117/NRXN1.24_4999_120000_0.01605_0.1264_0.014833.png
                gene_name: NRXN1
               theta_stop: 0.092 
                    nperm: 120000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.016 

Current progress: 2 percent done.
NRAS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.281149e-01	ci left: 8.009076e-02	ci right 9.115204e-02	k: 855	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
NRAS   10000 perm   2 sec   (6398 perm/sec)   p_kst 1.000000e-04   p_cons 8.550000e-02   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 7.748406e-02	ci left: 1.090370e-01	ci right 1.178757e-01	k: 2268	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
NRAS   20000 perm   4 sec   (5664 perm/sec)   p_kst 5.000000e-05   p_cons 1.134000e-01   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 6.647649e-02	ci left: 1.004033e-01	ci right 1.073403e-01	k: 3115	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
NRAS   30000 perm   6 sec   (5394 perm/sec)   p_kst 3.333333e-05   p_cons 1.038333e-01   p_joint 0

Joint ci ratio: 4.934784e-01	ci left: 1.188576e-03	ci right 1.986596e-03	k: 62	n:40000
Cons ci ratio: 5.652599e-02	ci left: 1.042831e-01	ci right 1.103740e-01	k: 4292	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
NRAS   40000 perm   8 sec   (5196 perm/sec)   p_kst 2.500000e-05   p_cons 1.073000e-01   p_joint 1.550000e-03

Joint ci ratio: 4.715821e-01	ci left: 1.056243e-03	ci right 1.723810e-03	k: 68	n:50000
Cons ci ratio: 5.048605e-02	ci left: 1.048769e-01	ci right 1.103287e-01	k: 5379	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
NRAS   50000 perm   10 sec   (5049 perm/sec)   p_kst 2.000000e-05   p_cons 1.075800e-01   p_joint 1.360000e-03

Joint ci ratio: 4.585183e-01	ci left: 9.390409e-04	ci right 1.510966e-03	k: 72	n:60000
Cons ci ratio: 4.619160e-02	ci left: 1.046858e-01	ci right 1.096523e-01	k: 6429	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
NRAS   60000 perm   12 sec   (4934 perm/sec)   p_kst 1.666667e-05   p_cons 1.071500e-01   p_joint 1.200000e-03

Joint ci ratio: 4.617355e-01	ci left: 7.922479e-04	ci right 1.279214e-03	k: 71	n:70000
Cons ci ratio: 4.293737e-02	ci left: 1.041108e-01	ci right 1.086933e-01	k: 7447	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
NRAS   70000 perm   15 sec   (4825 perm/sec)   p_kst 1.428571e-05   p_cons 1.063857e-01   p_joint 1.014286e-03

Joint ci ratio: 4.585891e-01	ci left: 7.042591e-04	ci right 1.133269e-03	k: 72	n:80000
Cons ci ratio: 4.031015e-02	ci left: 1.035776e-01	ci right 1.078511e-01	k: 8456	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
NRAS   80000 perm   17 sec   (4736 perm/sec)   p_kst 1.250000e-05   p_cons 1.057000e-01   p_joint 9.000000e-04

Joint ci ratio: 4.936980e-01	ci left: 5.282067e-04	ci right 8.830387e-04	k: 62	n:90000
Cons ci ratio: 3.796047e-02	ci left: 1.039189e-01	ci right 1.079510e-01	k: 9533	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
NRAS   90000 perm   19 sec   (4658 perm/sec)   p_kst 1.111111e-05   p_cons 1.059222e-01   p_joint 6.888889e-04

Joint ci ratio: 4.752058e-01	ci left: 5.192773e-04	ci right 8.507994e-04	k: 67	n:100000
Cons ci ratio: 3.599791e-02	ci left: 1.040985e-01	ci right 1.079244e-01	k: 10600	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
NRAS   100000 perm   22 sec   (4582 perm/sec)   p_kst 1.000000e-05   p_cons 1.060000e-01   p_joint 6.700000e-04

Joint ci ratio: 4.494974e-01	ci left: 5.363298e-04	ci right 8.545911e-04	k: 75	n:110000
Cons ci ratio: 3.434096e-02	ci left: 1.040874e-01	ci right 1.077334e-01	k: 11649	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
NRAS   110000 perm   24 sec   (4511 perm/sec)   p_kst 9.090909e-06   p_cons 1.059000e-01   p_joint 6.818182e-04

Joint ci ratio: 4.250313e-01	ci left: 5.583846e-04	ci right 8.665754e-04	k: 84	n:120000
Cons ci ratio: 3.282137e-02	ci left: 1.044953e-01	ci right 1.079904e-01	k: 12748	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
NRAS   120000 perm   27 sec   (4435 perm/sec)   p_kst 8.333333e-06   p_cons 1.062333e-01   p_joint 7.000000e-04

Joint ci ratio: 4.153753e-01	ci left: 5.429464e-04	ci right 8.339227e-04	k: 88	n:130000
Cons ci ratio: 3.154196e-02	ci left: 1.045149e-01	ci right 1.078719e-01	k: 13804	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
NRAS   130000 perm   30 sec   (4367 perm/sec)   p_kst 7.692308e-06   p_cons 1.061846e-01   p_joint 6.769231e-04

Joint ci ratio: 4.250531e-01	ci left: 4.786108e-04	ci right 7.427878e-04	k: 84	n:140000
Cons ci ratio: 3.038422e-02	ci left: 1.046404e-01	ci right 1.078759e-01	k: 14875	n:140000
KS ci ratio: 2.263181e+00	ci left: 1.730071e-06	ci right 5.160395e-05	k: 2	n:140000
NRAS   140000 perm   33 sec   (4301 perm/sec)   p_kst 1.428571e-05   p_cons 1.062500e-01   p_joint 6.000000e-04

Joint ci ratio: 4.618640e-01	ci left: 3.696952e-04	ci right 5.970087e-04	k: 71	n:150000
Cons ci ratio: 2.937517e-02	ci left: 1.045590e-01	ci right 1.076829e-01	k: 15917	n:150000
KS ci ratio: 1.959967e+00	ci left: 4.124500e-06	ci right 5.844736e-05	k: 3	n:150000
NRAS   150000 perm   35 sec   (4238 perm/sec)   p_kst 2.000000e-05   p_cons 1.061133e-01   p_joint 4.733333e-04

Joint ci ratio: 5.191226e-01	ci left: 2.643967e-04	ci right 4.544804e-04	k: 56	n:160000
Cons ci ratio: 2.849611e-02	ci left: 1.042534e-01	ci right 1.072734e-01	k: 16921	n:160000
KS ci ratio: 1.959969e+00	ci left: 3.866717e-06	ci right 5.479447e-05	k: 3	n:160000
NRAS   160000 perm   38 sec   (4177 perm/sec)   p_kst 1.875000e-05   p_cons 1.057562e-01   p_joint 3.500000e-04

Joint ci ratio: 5.059790e-01	ci left: 2.642074e-04	ci right 4.476581e-04	k: 59	n:170000
Cons ci ratio: 2.766046e-02	ci left: 1.041955e-01	ci right 1.071238e-01	k: 17961	n:170000
KS ci ratio: 1.959971e+00	ci left: 3.639263e-06	ci right 5.157132e-05	k: 3	n:170000
NRAS   170000 perm   41 sec   (4118 perm/sec)   p_kst 1.764706e-05   p_cons 1.056529e-01   p_joint 3.470588e-04

Joint ci ratio: 4.977534e-01	ci left: 2.592328e-04	ci right 4.352960e-04	k: 61	n:180000
Cons ci ratio: 2.688555e-02	ci left: 1.042059e-01	ci right 1.070512e-01	k: 19012	n:180000
KS ci ratio: 1.959973e+00	ci left: 3.437081e-06	ci right 4.870629e-05	k: 3	n:180000
NRAS   180000 perm   44 sec   (4055 perm/sec)   p_kst 1.666667e-05   p_cons 1.056222e-01   p_joint 3.388889e-04

Joint ci ratio: 4.861317e-01	ci left: 2.594188e-04	ci right 4.301198e-04	k: 64	n:190000
Cons ci ratio: 2.618035e-02	ci left: 1.041587e-01	ci right 1.069270e-01	k: 20052	n:190000
KS ci ratio: 1.959974e+00	ci left: 3.256181e-06	ci right 4.614284e-05	k: 3	n:190000
NRAS   190000 perm   48 sec   (3998 perm/sec)   p_kst 1.578947e-05   p_cons 1.055368e-01   p_joint 3.368421e-04

Joint ci ratio: 5.333711e-01	ci left: 1.985093e-04	ci right 3.466124e-04	k: 53	n:200000
Cons ci ratio: 2.552585e-02	ci left: 1.041320e-01	ci right 1.068294e-01	k: 21095	n:200000
KS ci ratio: 1.959976e+00	ci left: 3.093371e-06	ci right 4.383573e-05	k: 3	n:200000
NRAS   200000 perm   51 sec   (3933 perm/sec)   p_kst 1.500000e-05   p_cons 1.054750e-01   p_joint 2.650000e-04

Joint ci ratio: 5.285022e-01	ci left: 1.931793e-04	ci right 3.355025e-04	k: 54	n:210000
Cons ci ratio: 2.490804e-02	ci left: 1.041845e-01	ci right 1.068169e-01	k: 22154	n:210000
KS ci ratio: 1.959977e+00	ci left: 2.946067e-06	ci right 4.174835e-05	k: 3	n:210000
NRAS   210000 perm   54 sec   (3879 perm/sec)   p_kst 1.428571e-05   p_cons 1.054952e-01   p_joint 2.571429e-04

Joint ci ratio: 5.059997e-01	ci left: 2.041585e-04	ci right 3.459216e-04	k: 59	n:220000
Cons ci ratio: 2.431956e-02	ci left: 1.043368e-01	ci right 1.069100e-01	k: 23236	n:220000
KS ci ratio: 1.959978e+00	ci left: 2.812155e-06	ci right 3.985072e-05	k: 3	n:220000
NRAS   220000 perm   57 sec   (3827 perm/sec)   p_kst 1.363636e-05   p_cons 1.056182e-01   p_joint 2.681818e-04

Joint ci ratio: 5.102740e-01	ci left: 1.914916e-04	ci right 3.259812e-04	k: 58	n:230000
Cons ci ratio: 2.377856e-02	ci left: 1.044160e-01	ci right 1.069331e-01	k: 24304	n:230000
KS ci ratio: 1.753054e+00	ci left: 4.738565e-06	ci right 4.452804e-05	k: 4	n:230000
NRAS   230000 perm   61 sec   (3780 perm/sec)   p_kst 1.739130e-05   p_cons 1.056696e-01   p_joint 2.521739e-04

Joint ci ratio: 5.018397e-01	ci left: 1.907816e-04	ci right 3.217880e-04	k: 60	n:240000
Cons ci ratio: 2.328855e-02	ci left: 1.043566e-01	ci right 1.068196e-01	k: 25340	n:240000
KS ci ratio: 1.753055e+00	ci left: 4.541124e-06	ci right 4.267273e-05	k: 4	n:240000
NRAS   240000 perm   64 sec   (3728 perm/sec)   p_kst 1.666667e-05   p_cons 1.055833e-01   p_joint 2.500000e-04

Joint ci ratio: 5.977418e-01	ci left: 1.210822e-04	ci right 2.270805e-04	k: 42	n:250000
Cons ci ratio: 2.282135e-02	ci left: 1.043541e-01	ci right 1.067670e-01	k: 26389	n:250000
KS ci ratio: 1.753056e+00	ci left: 4.359478e-06	ci right 4.096584e-05	k: 4	n:250000
NRAS   250000 perm   68 sec   (3675 perm/sec)   p_kst 1.600000e-05   p_cons 1.055560e-01   p_joint 1.680000e-04

Joint ci ratio: 6.276541e-01	ci left: 1.034292e-04	ci right 2.006021e-04	k: 38	n:260000
Cons ci ratio: 2.239442e-02	ci left: 1.042413e-01	ci right 1.066060e-01	k: 27409	n:260000
KS ci ratio: 1.600312e+00	ci left: 6.244207e-06	ci right 4.487762e-05	k: 5	n:260000
NRAS   260000 perm   72 sec   (3619 perm/sec)   p_kst 1.923077e-05   p_cons 1.054192e-01   p_joint 1.461538e-04

Joint ci ratio: 6.197594e-01	ci left: 1.027161e-04	ci right 1.974551e-04	k: 39	n:270000
Cons ci ratio: 2.198842e-02	ci left: 1.041557e-01	ci right 1.064750e-01	k: 28434	n:270000
KS ci ratio: 1.600313e+00	ci left: 6.012939e-06	ci right 4.321551e-05	k: 5	n:270000
NRAS   270000 perm   75 sec   (3578 perm/sec)   p_kst 1.851852e-05   p_cons 1.053111e-01   p_joint 1.444444e-04

Joint ci ratio: 6.121552e-01	ci left: 1.020611e-04	ci right 1.945259e-04	k: 40	n:280000
Cons ci ratio: 2.160413e-02	ci left: 1.040730e-01	ci right 1.063495e-01	k: 29458	n:280000
KS ci ratio: 1.600313e+00	ci left: 5.798190e-06	ci right 4.167212e-05	k: 5	n:280000
NRAS   280000 perm   79 sec   (3535 perm/sec)   p_kst 1.785714e-05   p_cons 1.052071e-01   p_joint 1.428571e-04

Joint ci ratio: 6.276591e-01	ci left: 9.272942e-05	ci right 1.798507e-04	k: 38	n:290000
Cons ci ratio: 2.123815e-02	ci left: 1.040066e-01	ci right 1.062426e-01	k: 30485	n:290000
KS ci ratio: 1.600314e+00	ci left: 5.598252e-06	ci right 4.023517e-05	k: 5	n:290000
NRAS   290000 perm   83 sec   (3494 perm/sec)   p_kst 1.724138e-05   p_cons 1.051207e-01   p_joint 1.310345e-04

Joint ci ratio: 6.121583e-01	ci left: 9.525694e-05	ci right 1.815578e-04	k: 40	n:300000
Cons ci ratio: 2.088534e-02	ci left: 1.039881e-01	ci right 1.061862e-01	k: 31525	n:300000
KS ci ratio: 1.600315e+00	ci left: 5.411643e-06	ci right 3.889401e-05	k: 5	n:300000
NRAS   300000 perm   87 sec   (3454 perm/sec)   p_kst 1.666667e-05   p_cons 1.050833e-01   p_joint 1.333333e-04

Joint ci ratio: 5.909193e-01	ci left: 1.003866e-04	ci right 1.868365e-04	k: 43	n:310000
Cons ci ratio: 2.055625e-02	ci left: 1.039101e-01	ci right 1.060715e-01	k: 32546	n:310000
KS ci ratio: 1.600315e+00	ci left: 5.237073e-06	ci right 3.763938e-05	k: 5	n:310000
NRAS   310000 perm   91 sec   (3416 perm/sec)   p_kst 1.612903e-05   p_cons 1.049871e-01   p_joint 1.387097e-04

Joint ci ratio: 5.843171e-01	ci left: 9.990943e-05	ci right 1.845830e-04	k: 44	n:320000
Cons ci ratio: 2.023921e-02	ci left: 1.038652e-01	ci right 1.059919e-01	k: 33576	n:320000
KS ci ratio: 1.600316e+00	ci left: 5.073414e-06	ci right 3.646316e-05	k: 5	n:320000
NRAS   320000 perm   95 sec   (3378 perm/sec)   p_kst 1.562500e-05   p_cons 1.049250e-01   p_joint 1.375000e-04

Joint ci ratio: 5.717492e-01	ci left: 1.020556e-04	ci right 1.859277e-04	k: 46	n:330000
Cons ci ratio: 1.992322e-02	ci left: 1.039470e-01	ci right 1.060418e-01	k: 34647	n:330000
KS ci ratio: 1.481603e+00	ci left: 6.672435e-06	ci right 3.957374e-05	k: 6	n:330000
NRAS   330000 perm   99 sec   (3340 perm/sec)   p_kst 1.818182e-05   p_cons 1.049909e-01   p_joint 1.393939e-04

Joint ci ratio: 5.657625e-01	ci left: 1.015718e-04	ci right 1.838194e-04	k: 47	n:340000
Cons ci ratio: 1.964340e-02	ci left: 1.038163e-01	ci right 1.058787e-01	k: 35647	n:340000
KS ci ratio: 1.481603e+00	ci left: 6.476186e-06	ci right 3.840982e-05	k: 6	n:340000
NRAS   340000 perm   103 sec   (3303 perm/sec)   p_kst 1.764706e-05   p_cons 1.048441e-01   p_joint 1.382353e-04

Joint ci ratio: 5.717516e-01	ci left: 9.622379e-05	ci right 1.753035e-04	k: 46	n:350000
Cons ci ratio: 1.934646e-02	ci left: 1.039692e-01	ci right 1.060031e-01	k: 36744	n:350000
KS ci ratio: 1.481604e+00	ci left: 6.291152e-06	ci right 3.731241e-05	k: 6	n:350000
NRAS   350000 perm   107 sec   (3266 perm/sec)   p_kst 1.714286e-05   p_cons 1.049829e-01   p_joint 1.314286e-04

Joint ci ratio: 5.599611e-01	ci left: 9.831106e-05	ci right 1.767768e-04	k: 48	n:360000
Cons ci ratio: 1.908034e-02	ci left: 1.039396e-01	ci right 1.059446e-01	k: 37778	n:360000
KS ci ratio: 1.481604e+00	ci left: 6.116397e-06	ci right 3.627596e-05	k: 6	n:360000
NRAS   360000 perm   111 sec   (3230 perm/sec)   p_kst 1.666667e-05   p_cons 1.049389e-01   p_joint 1.333333e-04

Joint ci ratio: 5.384141e-01	ci left: 1.049641e-04	ci right 1.842962e-04	k: 52	n:370000
Cons ci ratio: 1.882924e-02	ci left: 1.038686e-01	ci right 1.058457e-01	k: 38796	n:370000
KS ci ratio: 1.385912e+00	ci left: 7.606419e-06	ci right 3.897981e-05	k: 7	n:370000
NRAS   370000 perm   116 sec   (3195 perm/sec)   p_kst 1.891892e-05   p_cons 1.048541e-01   p_joint 1.405405e-04

Joint ci ratio: 5.334058e-01	ci left: 1.044771e-04	ci right 1.824311e-04	k: 53	n:380000
Cons ci ratio: 1.858650e-02	ci left: 1.038147e-01	ci right 1.057650e-01	k: 39819	n:380000
KS ci ratio: 1.385913e+00	ci left: 7.406250e-06	ci right 3.795404e-05	k: 7	n:380000
NRAS   380000 perm   120 sec   (3156 perm/sec)   p_kst 1.842105e-05   p_cons 1.047868e-01   p_joint 1.394737e-04

Joint ci ratio: 5.237938e-01	ci left: 1.062415e-04	ci right 1.835604e-04	k: 55	n:390000
Cons ci ratio: 1.832861e-02	ci left: 1.040115e-01	ci right 1.059380e-01	k: 40939	n:390000
KS ci ratio: 1.385913e+00	ci left: 7.216345e-06	ci right 3.698087e-05	k: 7	n:390000
NRAS   390000 perm   125 sec   (3122 perm/sec)   p_kst 1.794872e-05   p_cons 1.049718e-01   p_joint 1.410256e-04

Joint ci ratio: 5.146833e-01	ci left: 1.079298e-04	ci right 1.846214e-04	k: 57	n:400000
Cons ci ratio: 1.809823e-02	ci left: 1.040217e-01	ci right 1.059240e-01	k: 41988	n:400000
KS ci ratio: 1.385914e+00	ci left: 7.035936e-06	ci right 3.605635e-05	k: 7	n:400000
NRAS   400000 perm   129 sec   (3089 perm/sec)   p_kst 1.750000e-05   p_cons 1.049700e-01   p_joint 1.425000e-04

Joint ci ratio: 5.018666e-01	ci left: 1.116758e-04	ci right 1.883665e-04	k: 60	n:410000
Cons ci ratio: 1.787424e-02	ci left: 1.040535e-01	ci right 1.059326e-01	k: 43046	n:410000
KS ci ratio: 1.385914e+00	ci left: 6.864327e-06	ci right 3.517694e-05	k: 7	n:410000
NRAS   410000 perm   134 sec   (3056 perm/sec)   p_kst 1.707317e-05   p_cons 1.049902e-01   p_joint 1.463415e-04

Joint ci ratio: 5.843271e-01	ci left: 7.612116e-05	ci right 1.406354e-04	k: 44	n:420000
Cons ci ratio: 1.804124e-02	ci left: 1.001353e-01	ci right 1.019607e-01	k: 42439	n:420000
KS ci ratio: 1.385914e+00	ci left: 6.700890e-06	ci right 3.433940e-05	k: 7	n:420000
NRAS   420000 perm   139 sec   (3017 perm/sec)   p_kst 1.666667e-05   p_cons 1.010452e-01   p_joint 1.047619e-04

Joint ci ratio: 5.657710e-01	ci left: 8.031231e-05	ci right 1.453463e-04	k: 47	n:430000
Cons ci ratio: 1.783102e-02	ci left: 1.001379e-01	ci right 1.019419e-01	k: 43446	n:430000
KS ci ratio: 1.385915e+00	ci left: 6.545055e-06	ci right 3.354082e-05	k: 7	n:430000
NRAS   430000 perm   144 sec   (2987 perm/sec)   p_kst 1.627907e-05   p_cons 1.010372e-01   p_joint 1.093023e-04

Joint ci ratio: 6.121719e-01	ci left: 6.494756e-05	ci right 1.237903e-04	k: 40	n:440000
Cons ci ratio: 1.762092e-02	ci left: 1.002130e-01	ci right 1.019968e-01	k: 44485	n:440000
KS ci ratio: 1.385915e+00	ci left: 6.396303e-06	ci right 3.277853e-05	k: 7	n:440000
NRAS   440000 perm   149 sec   (2951 perm/sec)   p_kst 1.590909e-05   p_cons 1.011023e-01   p_joint 9.090909e-05

Joint ci ratio: 6.121726e-01	ci left: 6.350426e-05	ci right 1.210395e-04	k: 40	n:450000
Cons ci ratio: 1.743300e-02	ci left: 1.001299e-01	ci right 1.018930e-01	k: 45454	n:450000
KS ci ratio: 1.385915e+00	ci left: 6.254162e-06	ci right 3.205013e-05	k: 7	n:450000
NRAS   450000 perm   154 sec   (2920 perm/sec)   p_kst 1.555556e-05   p_cons 1.010089e-01   p_joint 8.888889e-05

Joint ci ratio: 6.048409e-01	ci left: 6.396227e-05	ci right 1.209136e-04	k: 41	n:460000
Cons ci ratio: 1.723898e-02	ci left: 1.001761e-01	ci right 1.019202e-01	k: 46481	n:460000
KS ci ratio: 1.385916e+00	ci left: 6.118202e-06	ci right 3.135339e-05	k: 7	n:460000
NRAS   460000 perm   159 sec   (2892 perm/sec)   p_kst 1.521739e-05   p_cons 1.010457e-01   p_joint 8.913043e-05

Joint ci ratio: 6.121738e-01	ci left: 6.080192e-05	ci right 1.158890e-04	k: 40	n:470000
Cons ci ratio: 1.706609e-02	ci left: 1.000636e-01	ci right 1.017881e-01	k: 47434	n:470000
KS ci ratio: 1.385916e+00	ci left: 5.988027e-06	ci right 3.068630e-05	k: 7	n:470000
NRAS   470000 perm   164 sec   (2864 perm/sec)   p_kst 1.489362e-05   p_cons 1.009234e-01   p_joint 8.510638e-05

Joint ci ratio: 6.121744e-01	ci left: 5.953520e-05	ci right 1.134746e-04	k: 40	n:480000
Cons ci ratio: 1.688240e-02	ci left: 1.001261e-01	ci right 1.018329e-01	k: 48469	n:480000
KS ci ratio: 1.385916e+00	ci left: 5.863276e-06	ci right 3.004701e-05	k: 7	n:480000
NRAS   480000 perm   169 sec   (2833 perm/sec)   p_kst 1.458333e-05   p_cons 1.009771e-01   p_joint 8.333333e-05

Joint ci ratio: 6.358827e-01	ci left: 5.316669e-05	ci right 1.040794e-04	k: 37	n:490000
Cons ci ratio: 1.670432e-02	ci left: 1.001881e-01	ci right 1.018778e-01	k: 49505	n:490000
KS ci ratio: 1.385917e+00	ci left: 5.743617e-06	ci right 2.943381e-05	k: 7	n:490000
NRAS   490000 perm   175 sec   (2805 perm/sec)   p_kst 1.428571e-05   p_cons 1.010306e-01   p_joint 7.551020e-05

Joint ci ratio: 6.276773e-01	ci left: 5.378267e-05	ci right 1.043145e-04	k: 38	n:500000
Cons ci ratio: 1.653321e-02	ci left: 1.002318e-01	ci right 1.019048e-01	k: 50533	n:500000
KS ci ratio: 1.385917e+00	ci left: 5.628744e-06	ci right 2.884514e-05	k: 7	n:500000
NRAS   500000 perm   180 sec   (2779 perm/sec)   p_kst 1.400000e-05   p_cons 1.010660e-01   p_joint 7.600000e-05

Joint ci ratio: 6.276777e-01	ci left: 5.272809e-05	ci right 1.022691e-04	k: 38	n:510000
Cons ci ratio: 1.637910e-02	ci left: 1.001430e-01	ci right 1.017988e-01	k: 51494	n:510000
KS ci ratio: 1.385917e+00	ci left: 5.518376e-06	ci right 2.827955e-05	k: 7	n:510000
NRAS   510000 perm   185 sec   (2753 perm/sec)   p_kst 1.372549e-05   p_cons 1.009686e-01   p_joint 7.450980e-05

Joint ci ratio: 6.276782e-01	ci left: 5.171408e-05	ci right 1.003024e-04	k: 38	n:520000
Cons ci ratio: 1.621496e-02	ci left: 1.002167e-01	ci right 1.018569e-01	k: 52538	n:520000
KS ci ratio: 1.385917e+00	ci left: 5.412253e-06	ci right 2.773572e-05	k: 7	n:520000
NRAS   520000 perm   191 sec   (2727 perm/sec)   p_kst 1.346154e-05   p_cons 1.010346e-01   p_joint 7.307692e-05

Joint ci ratio: 6.625784e-01	ci left: 4.442679e-05	ci right 8.964337e-05	k: 34	n:530000
Cons ci ratio: 1.605532e-02	ci left: 1.002915e-01	ci right 1.019166e-01	k: 53584	n:530000
KS ci ratio: 1.385918e+00	ci left: 5.310135e-06	ci right 2.721240e-05	k: 7	n:530000
NRAS   530000 perm   196 sec   (2699 perm/sec)   p_kst 1.320755e-05   p_cons 1.011019e-01   p_joint 6.415094e-05

Joint ci ratio: 6.625788e-01	ci left: 4.360406e-05	ci right 8.798333e-05	k: 34	n:540000
Cons ci ratio: 1.590467e-02	ci left: 1.003138e-01	ci right 1.019238e-01	k: 54603	n:540000
KS ci ratio: 1.306655e+00	ci left: 6.396007e-06	ci right 2.919088e-05	k: 8	n:540000
NRAS   540000 perm   202 sec   (2674 perm/sec)   p_kst 1.481481e-05   p_cons 1.011167e-01   p_joint 6.296296e-05

Joint ci ratio: 6.625793e-01	ci left: 4.281126e-05	ci right 8.638365e-05	k: 34	n:550000
Cons ci ratio: 1.575709e-02	ci left: 1.003480e-01	ci right 1.019435e-01	k: 55629	n:550000
KS ci ratio: 1.306655e+00	ci left: 6.279715e-06	ci right 2.866014e-05	k: 8	n:550000
NRAS   550000 perm   207 sec   (2651 perm/sec)   p_kst 1.454545e-05   p_cons 1.011436e-01   p_joint 6.181818e-05

Joint ci ratio: 6.625796e-01	ci left: 4.204676e-05	ci right 8.484111e-05	k: 34	n:560000
Cons ci ratio: 1.561630e-02	ci left: 1.003490e-01	ci right 1.019301e-01	k: 56637	n:560000
KS ci ratio: 1.306655e+00	ci left: 6.167577e-06	ci right 2.814836e-05	k: 8	n:560000
NRAS   560000 perm   213 sec   (2628 perm/sec)   p_kst 1.428571e-05   p_cons 1.011375e-01   p_joint 6.071429e-05

Joint ci ratio: 6.625800e-01	ci left: 4.130909e-05	ci right 8.335268e-05	k: 34	n:570000
Cons ci ratio: 1.547518e-02	ci left: 1.003972e-01	ci right 1.019647e-01	k: 57672	n:570000
KS ci ratio: 1.306655e+00	ci left: 6.059374e-06	ci right 2.765453e-05	k: 8	n:570000
NRAS   570000 perm   219 sec   (2605 perm/sec)   p_kst 1.403509e-05   p_cons 1.011789e-01   p_joint 5.964912e-05

Joint ci ratio: 6.444229e-01	ci left: 4.347271e-05	ci right 8.592859e-05	k: 36	n:580000
Cons ci ratio: 1.534436e-02	ci left: 1.003665e-01	ci right 1.019202e-01	k: 58662	n:580000
KS ci ratio: 1.306655e+00	ci left: 5.954901e-06	ci right 2.717773e-05	k: 8	n:580000
NRAS   580000 perm   225 sec   (2581 perm/sec)   p_kst 1.379310e-05   p_cons 1.011414e-01   p_joint 6.206897e-05

Joint ci ratio: 6.197849e-01	ci left: 4.700518e-05	ci right 9.036210e-05	k: 39	n:590000
Cons ci ratio: 1.521554e-02	ci left: 1.003522e-01	ci right 1.018924e-01	k: 59661	n:590000
KS ci ratio: 1.239601e+00	ci left: 6.975232e-06	ci right 2.895710e-05	k: 9	n:590000
NRAS   590000 perm   231 sec   (2558 perm/sec)   p_kst 1.525424e-05   p_cons 1.011203e-01   p_joint 6.610169e-05

Joint ci ratio: 6.121797e-01	ci left: 4.762806e-05	ci right 9.077998e-05	k: 40	n:600000
Cons ci ratio: 1.508589e-02	ci left: 1.003865e-01	ci right 1.019140e-01	k: 60689	n:600000
KS ci ratio: 1.239601e+00	ci left: 6.858977e-06	ci right 2.847448e-05	k: 9	n:600000
NRAS   600000 perm   237 sec   (2536 perm/sec)   p_kst 1.500000e-05   p_cons 1.011483e-01   p_joint 6.666667e-05

Joint ci ratio: 6.121801e-01	ci left: 4.684726e-05	ci right 8.929180e-05	k: 40	n:610000
Cons ci ratio: 1.495855e-02	ci left: 1.004312e-01	ci right 1.019464e-01	k: 61724	n:610000
KS ci ratio: 1.239602e+00	ci left: 6.746535e-06	ci right 2.800769e-05	k: 9	n:610000
NRAS   610000 perm   243 sec   (2514 perm/sec)   p_kst 1.475410e-05   p_cons 1.011869e-01   p_joint 6.557377e-05

Joint ci ratio: 6.048482e-01	ci left: 4.745574e-05	ci right 8.971044e-05	k: 41	n:620000
Cons ci ratio: 1.484782e-02	ci left: 1.003105e-01	ci right 1.018126e-01	k: 62657	n:620000
KS ci ratio: 1.181913e+00	ci left: 7.734524e-06	ci right 2.966166e-05	k: 10	n:620000
NRAS   620000 perm   249 sec   (2489 perm/sec)   p_kst 1.612903e-05   p_cons 1.010597e-01   p_joint 6.612903e-05

Joint ci ratio: 5.977735e-01	ci left: 4.804788e-05	ci right 9.011291e-05	k: 42	n:630000
Cons ci ratio: 1.472200e-02	ci left: 1.004088e-01	ci right 1.018996e-01	k: 63726	n:630000
KS ci ratio: 1.131595e+00	ci left: 8.716159e-06	ci right 3.124112e-05	k: 11	n:630000
NRAS   630000 perm   256 sec   (2465 perm/sec)   p_kst 1.746032e-05   p_cons 1.011524e-01   p_joint 6.666667e-05

Joint ci ratio: 5.909415e-01	ci left: 4.862434e-05	ci right 9.050007e-05	k: 43	n:640000
Cons ci ratio: 1.460735e-02	ci left: 1.004045e-01	ci right 1.018835e-01	k: 64731	n:640000
KS ci ratio: 1.131595e+00	ci left: 8.579968e-06	ci right 3.075298e-05	k: 11	n:640000
NRAS   640000 perm   262 sec   (2445 perm/sec)   p_kst 1.718750e-05   p_cons 1.011422e-01   p_joint 6.718750e-05

Joint ci ratio: 5.977742e-01	ci left: 4.656947e-05	ci right 8.734024e-05	k: 42	n:650000
Cons ci ratio: 1.449276e-02	ci left: 1.004326e-01	ci right 1.019002e-01	k: 65757	n:650000
KS ci ratio: 1.131595e+00	ci left: 8.447968e-06	ci right 3.027986e-05	k: 11	n:650000
NRAS   650000 perm   268 sec   (2425 perm/sec)   p_kst 1.692308e-05   p_cons 1.011646e-01   p_joint 6.461538e-05

Joint ci ratio: 5.977745e-01	ci left: 4.586387e-05	ci right 8.601691e-05	k: 42	n:660000
Cons ci ratio: 1.438119e-02	ci left: 1.004553e-01	ci right 1.019119e-01	k: 66780	n:660000
KS ci ratio: 1.131595e+00	ci left: 8.319968e-06	ci right 2.982107e-05	k: 11	n:660000
NRAS   660000 perm   275 sec   (2397 perm/sec)   p_kst 1.666667e-05   p_cons 1.011818e-01   p_joint 6.363636e-05

Joint ci ratio: 6.197875e-01	ci left: 4.139257e-05	ci right 7.957271e-05	k: 39	n:670000
Cons ci ratio: 1.484161e-02	ci left: 9.360123e-02	ci right 9.500228e-02	k: 63181	n:670000
KS ci ratio: 1.131596e+00	ci left: 8.195789e-06	ci right 2.937599e-05	k: 11	n:670000
NRAS   670000 perm   282 sec   (2378 perm/sec)   p_kst 1.641791e-05   p_cons 9.430000e-02   p_joint 5.820896e-05

Joint ci ratio: 6.358897e-01	ci left: 3.831118e-05	ci right 7.499868e-05	k: 37	n:680000
Cons ci ratio: 1.473309e-02	ci left: 9.359466e-02	ci right 9.498527e-02	k: 64116	n:680000
KS ci ratio: 1.087201e+00	ci left: 9.118525e-06	ci right 3.082566e-05	k: 12	n:680000
NRAS   680000 perm   288 sec   (2360 perm/sec)   p_kst 1.764706e-05   p_cons 9.428824e-02   p_joint 5.441176e-05

Joint ci ratio: 6.276842e-01	ci left: 3.897284e-05	ci right 7.559048e-05	k: 38	n:690000
Cons ci ratio: 1.462059e-02	ci left: 9.366198e-02	ci right 9.504288e-02	k: 65102	n:690000
KS ci ratio: 1.087201e+00	ci left: 8.986372e-06	ci right 3.037891e-05	k: 12	n:690000
NRAS   690000 perm   295 sec   (2341 perm/sec)   p_kst 1.739130e-05   p_cons 9.435072e-02   p_joint 5.507246e-05

Joint ci ratio: 6.276844e-01	ci left: 3.841608e-05	ci right 7.451063e-05	k: 38	n:700000
Cons ci ratio: 1.451488e-02	ci left: 9.367758e-02	ci right 9.504864e-02	k: 66053	n:700000
KS ci ratio: 1.087202e+00	ci left: 8.857995e-06	ci right 2.994493e-05	k: 12	n:700000
NRAS   700000 perm   301 sec   (2323 perm/sec)   p_kst 1.714286e-05   p_cons 9.436143e-02   p_joint 5.428571e-05

Joint ci ratio: 6.276847e-01	ci left: 3.787500e-05	ci right 7.346120e-05	k: 38	n:710000
Cons ci ratio: 1.441035e-02	ci left: 9.370541e-02	ci right 9.506692e-02	k: 67013	n:710000
KS ci ratio: 1.087202e+00	ci left: 8.733234e-06	ci right 2.952317e-05	k: 12	n:710000
NRAS   710000 perm   308 sec   (2306 perm/sec)   p_kst 1.690141e-05   p_cons 9.438451e-02   p_joint 5.352113e-05

Joint ci ratio: 6.197888e-01	ci left: 3.851807e-05	ci right 7.404688e-05	k: 39	n:720000
Cons ci ratio: 1.431992e-02	ci left: 9.359129e-02	ci right 9.494253e-02	k: 67871	n:720000
KS ci ratio: 1.087202e+00	ci left: 8.611939e-06	ci right 2.911313e-05	k: 12	n:720000
NRAS   720000 perm   315 sec   (2288 perm/sec)   p_kst 1.666667e-05   p_cons 9.426528e-02   p_joint 5.416667e-05

Joint ci ratio: 6.121835e-01	ci left: 3.914629e-05	ci right 7.461385e-05	k: 40	n:730000
Cons ci ratio: 1.421964e-02	ci left: 9.361824e-02	ci right 9.496033e-02	k: 68830	n:730000
KS ci ratio: 1.087202e+00	ci left: 8.493966e-06	ci right 2.871432e-05	k: 12	n:730000
NRAS   730000 perm   322 sec   (2270 perm/sec)   p_kst 1.643836e-05   p_cons 9.428767e-02   p_joint 5.479452e-05

Joint ci ratio: 6.121838e-01	ci left: 3.861728e-05	ci right 7.360556e-05	k: 40	n:740000
Cons ci ratio: 1.412892e-02	ci left: 9.355423e-02	ci right 9.488678e-02	k: 69722	n:740000
KS ci ratio: 1.087202e+00	ci left: 8.379183e-06	ci right 2.832629e-05	k: 12	n:740000
NRAS   740000 perm   328 sec   (2254 perm/sec)   p_kst 1.621622e-05   p_cons 9.421892e-02   p_joint 5.405405e-05

Joint ci ratio: 6.121840e-01	ci left: 3.810238e-05	ci right 7.262416e-05	k: 40	n:750000
Cons ci ratio: 1.403882e-02	ci left: 9.350526e-02	ci right 9.482855e-02	k: 70624	n:750000
KS ci ratio: 1.087202e+00	ci left: 8.267460e-06	ci right 2.794861e-05	k: 12	n:750000
NRAS   750000 perm   335 sec   (2237 perm/sec)   p_kst 1.600000e-05   p_cons 9.416533e-02   p_joint 5.333333e-05

Joint ci ratio: 6.121842e-01	ci left: 3.760103e-05	ci right 7.166859e-05	k: 40	n:760000
Cons ci ratio: 1.394666e-02	ci left: 9.350350e-02	ci right 9.481801e-02	k: 71561	n:760000
KS ci ratio: 1.087202e+00	ci left: 8.158677e-06	ci right 2.758087e-05	k: 12	n:760000
NRAS   760000 perm   342 sec   (2220 perm/sec)   p_kst 1.578947e-05   p_cons 9.415921e-02   p_joint 5.263158e-05

Joint ci ratio: 6.121845e-01	ci left: 3.711270e-05	ci right 7.073784e-05	k: 40	n:770000
Cons ci ratio: 1.385407e-02	ci left: 9.352901e-02	ci right 9.483508e-02	k: 72519	n:770000
KS ci ratio: 1.087203e+00	ci left: 8.052720e-06	ci right 2.722268e-05	k: 12	n:770000
NRAS   770000 perm   351 sec   (2196 perm/sec)   p_kst 1.558442e-05   p_cons 9.418052e-02   p_joint 5.194805e-05

Joint ci ratio: 6.121847e-01	ci left: 3.663689e-05	ci right 6.983095e-05	k: 40	n:780000
Cons ci ratio: 1.376093e-02	ci left: 9.358329e-02	ci right 9.488126e-02	k: 73500	n:780000
KS ci ratio: 1.087203e+00	ci left: 7.949480e-06	ci right 2.687367e-05	k: 12	n:780000
NRAS   780000 perm   358 sec   (2179 perm/sec)   p_kst 1.538462e-05   p_cons 9.423077e-02   p_joint 5.128205e-05

Joint ci ratio: 6.048527e-01	ci left: 3.724368e-05	ci right 7.040584e-05	k: 41	n:790000
Cons ci ratio: 1.367268e-02	ci left: 9.359837e-02	ci right 9.488816e-02	k: 74451	n:790000
KS ci ratio: 1.087203e+00	ci left: 7.848853e-06	ci right 2.653350e-05	k: 12	n:790000
NRAS   790000 perm   365 sec   (2163 perm/sec)   p_kst 1.518987e-05   p_cons 9.424177e-02   p_joint 5.189873e-05

Joint ci ratio: 6.048529e-01	ci left: 3.677813e-05	ci right 6.952578e-05	k: 41	n:800000
Cons ci ratio: 1.358769e-02	ci left: 9.359315e-02	ci right 9.487479e-02	k: 75386	n:800000
KS ci ratio: 1.087203e+00	ci left: 7.750742e-06	ci right 2.620183e-05	k: 12	n:800000
NRAS   800000 perm   373 sec   (2147 perm/sec)   p_kst 1.500000e-05   p_cons 9.423250e-02   p_joint 5.125000e-05

Joint ci ratio: 5.909458e-01	ci left: 3.841916e-05	ci right 7.150640e-05	k: 43	n:810000
Cons ci ratio: 1.350584e-02	ci left: 9.356840e-02	ci right 9.484192e-02	k: 76305	n:810000
KS ci ratio: 1.012130e+00	ci left: 9.449328e-06	ci right 2.899936e-05	k: 14	n:810000
NRAS   810000 perm   380 sec   (2131 perm/sec)   p_kst 1.728395e-05   p_cons 9.420370e-02   p_joint 5.308642e-05

Joint ci ratio: 5.909460e-01	ci left: 3.795063e-05	ci right 7.063438e-05	k: 43	n:820000
Cons ci ratio: 1.342496e-02	ci left: 9.355035e-02	ci right 9.481594e-02	k: 77229	n:820000
KS ci ratio: 1.012130e+00	ci left: 9.334092e-06	ci right 2.864571e-05	k: 14	n:820000
NRAS   820000 perm   388 sec   (2116 perm/sec)   p_kst 1.707317e-05   p_cons 9.418171e-02   p_joint 5.243902e-05

Joint ci ratio: 5.843429e-01	ci left: 3.851889e-05	ci right 7.116555e-05	k: 44	n:830000
Cons ci ratio: 1.334157e-02	ci left: 9.358320e-02	ci right 9.484132e-02	k: 78195	n:830000
KS ci ratio: 1.012130e+00	ci left: 9.221632e-06	ci right 2.830059e-05	k: 14	n:830000
NRAS   830000 perm   395 sec   (2101 perm/sec)   p_kst 1.686747e-05   p_cons 9.421084e-02   p_joint 5.301205e-05

Joint ci ratio: 5.843431e-01	ci left: 3.806033e-05	ci right 7.031835e-05	k: 44	n:840000
Cons ci ratio: 1.325989e-02	ci left: 9.361293e-02	ci right 9.486368e-02	k: 79159	n:840000
KS ci ratio: 1.012130e+00	ci left: 9.111851e-06	ci right 2.796368e-05	k: 14	n:840000
NRAS   840000 perm   403 sec   (2085 perm/sec)   p_kst 1.666667e-05   p_cons 9.423690e-02   p_joint 5.238095e-05

Joint ci ratio: 5.779565e-01	ci left: 3.861591e-05	ci right 7.083883e-05	k: 45	n:850000
Cons ci ratio: 1.318360e-02	ci left: 9.359154e-02	ci right 9.483475e-02	k: 80080	n:850000
KS ci ratio: 1.012130e+00	ci left: 9.004652e-06	ci right 2.763469e-05	k: 14	n:850000
NRAS   850000 perm   411 sec   (2070 perm/sec)   p_kst 1.647059e-05   p_cons 9.421176e-02   p_joint 5.294118e-05

Joint ci ratio: 5.717748e-01	ci left: 3.916047e-05	ci right 7.134536e-05	k: 46	n:860000
Cons ci ratio: 1.310898e-02	ci left: 9.356603e-02	ci right 9.480182e-02	k: 80997	n:860000
KS ci ratio: 9.799903e-01	ci left: 9.762109e-06	ci right 2.876753e-05	k: 15	n:860000
NRAS   860000 perm   419 sec   (2055 perm/sec)   p_kst 1.744186e-05   p_cons 9.418256e-02   p_joint 5.348837e-05

Joint ci ratio: 5.599839e-01	ci left: 4.068005e-05	ci right 7.314996e-05	k: 48	n:870000
Cons ci ratio: 1.302981e-02	ci left: 9.361677e-02	ci right 9.484570e-02	k: 81980	n:870000
KS ci ratio: 9.507298e-01	ci left: 1.051197e-05	ci right 2.986534e-05	k: 16	n:870000
NRAS   870000 perm   426 sec   (2040 perm/sec)   p_kst 1.839080e-05   p_cons 9.422989e-02   p_joint 5.517241e-05

Joint ci ratio: 5.599841e-01	ci left: 4.021778e-05	ci right 7.231872e-05	k: 48	n:880000
Cons ci ratio: 1.295231e-02	ci left: 9.366298e-02	ci right 9.488515e-02	k: 82960	n:880000
KS ci ratio: 9.507299e-01	ci left: 1.039251e-05	ci right 2.952597e-05	k: 16	n:880000
NRAS   880000 perm   434 sec   (2026 perm/sec)   p_kst 1.818182e-05   p_cons 9.427273e-02   p_joint 5.454545e-05

Joint ci ratio: 5.543558e-01	ci left: 4.073113e-05	ci right 7.278654e-05	k: 49	n:890000
Cons ci ratio: 1.288025e-02	ci left: 9.365439e-02	ci right 9.486960e-02	k: 83892	n:890000
KS ci ratio: 9.507300e-01	ci left: 1.027574e-05	ci right 2.919422e-05	k: 16	n:890000
NRAS   890000 perm   443 sec   (2011 perm/sec)   p_kst 1.797753e-05   p_cons 9.426067e-02   p_joint 5.505618e-05

Joint ci ratio: 5.599844e-01	ci left: 3.932404e-05	ci right 7.071165e-05	k: 48	n:900000
Cons ci ratio: 1.280746e-02	ci left: 9.367149e-02	ci right 9.488001e-02	k: 84847	n:900000
KS ci ratio: 9.507301e-01	ci left: 1.016157e-05	ci right 2.886984e-05	k: 16	n:900000
NRAS   900000 perm   451 sec   (1996 perm/sec)   p_kst 1.777778e-05   p_cons 9.427444e-02   p_joint 5.333333e-05

Joint ci ratio: 5.488941e-01	ci left: 4.078155e-05	ci right 7.243757e-05	k: 50	n:910000
Cons ci ratio: 1.273770e-02	ci left: 9.366413e-02	ci right 9.486592e-02	k: 85780	n:910000
KS ci ratio: 9.239432e-01	ci left: 1.088259e-05	ci right 2.991043e-05	k: 17	n:910000
NRAS   910000 perm   459 sec   (1982 perm/sec)   p_kst 1.868132e-05   p_cons 9.426374e-02   p_joint 5.494505e-05

Joint ci ratio: 5.488943e-01	ci left: 4.033826e-05	ci right 7.165021e-05	k: 50	n:920000
Cons ci ratio: 1.266632e-02	ci left: 9.369380e-02	ci right 9.488919e-02	k: 86747	n:920000
KS ci ratio: 9.239433e-01	ci left: 1.076430e-05	ci right 2.958532e-05	k: 17	n:920000
NRAS   920000 perm   468 sec   (1967 perm/sec)   p_kst 1.847826e-05   p_cons 9.429022e-02   p_joint 5.434783e-05

Joint ci ratio: 5.843446e-01	ci left: 3.437705e-05	ci right 6.351341e-05	k: 44	n:930000
Cons ci ratio: 1.260223e-02	ci left: 9.364029e-02	ci right 9.482890e-02	k: 87637	n:930000
KS ci ratio: 9.239434e-01	ci left: 1.064856e-05	ci right 2.926720e-05	k: 17	n:930000
NRAS   930000 perm   476 sec   (1954 perm/sec)   p_kst 1.827957e-05   p_cons 9.423333e-02   p_joint 4.731183e-05

Joint ci ratio: 5.779580e-01	ci left: 3.491862e-05	ci right 6.405644e-05	k: 45	n:940000
Cons ci ratio: 1.253271e-02	ci left: 9.367492e-02	ci right 9.485737e-02	k: 88609	n:940000
KS ci ratio: 9.239435e-01	ci left: 1.053528e-05	ci right 2.895585e-05	k: 17	n:940000
NRAS   940000 perm   484 sec   (1940 perm/sec)   p_kst 1.808511e-05   p_cons 9.426489e-02   p_joint 4.787234e-05

Joint ci ratio: 6.121876e-01	ci left: 3.008078e-05	ci right 5.733498e-05	k: 40	n:950000
Cons ci ratio: 1.246539e-02	ci left: 9.369415e-02	ci right 9.487043e-02	k: 89567	n:950000
KS ci ratio: 8.357367e-01	ci left: 1.368356e-05	ci right 3.379005e-05	k: 21	n:950000
NRAS   950000 perm   493 sec   (1927 perm/sec)   p_kst 2.210526e-05   p_cons 9.428105e-02   p_joint 4.210526e-05

Joint ci ratio: 6.048556e-01	ci left: 3.064841e-05	ci right 5.793824e-05	k: 41	n:960000
Cons ci ratio: 1.240149e-02	ci left: 9.368078e-02	ci right 9.485083e-02	k: 90494	n:960000
KS ci ratio: 8.357368e-01	ci left: 1.354102e-05	ci right 3.343807e-05	k: 21	n:960000
NRAS   960000 perm   502 sec   (1913 perm/sec)   p_kst 2.187500e-05   p_cons 9.426458e-02   p_joint 4.270833e-05

Joint ci ratio: 5.977808e-01	ci left: 3.120626e-05	ci right 5.852718e-05	k: 42	n:970000
Cons ci ratio: 1.234073e-02	ci left: 9.363790e-02	ci right 9.480164e-02	k: 91392	n:970000
KS ci ratio: 8.357369e-01	ci left: 1.340142e-05	ci right 3.309335e-05	k: 21	n:970000
NRAS   970000 perm   510 sec   (1900 perm/sec)   p_kst 2.164948e-05   p_cons 9.421856e-02   p_joint 4.329897e-05

Joint ci ratio: 5.909487e-01	ci left: 3.175458e-05	ci right 5.910232e-05	k: 43	n:980000
Cons ci ratio: 1.227968e-02	ci left: 9.361218e-02	ci right 9.476981e-02	k: 92306	n:980000
KS ci ratio: 8.357370e-01	ci left: 1.326467e-05	ci right 3.275566e-05	k: 21	n:980000
NRAS   980000 perm   519 sec   (1887 perm/sec)   p_kst 2.142857e-05   p_cons 9.418980e-02   p_joint 4.387755e-05

Joint ci ratio: 5.909488e-01	ci left: 3.143382e-05	ci right 5.850533e-05	k: 43	n:990000
Cons ci ratio: 1.221959e-02	ci left: 9.358599e-02	ci right 9.473759e-02	k: 93219	n:990000
KS ci ratio: 8.357371e-01	ci left: 1.313068e-05	ci right 3.242480e-05	k: 21	n:990000
NRAS   990000 perm   528 sec   (1874 perm/sec)   p_kst 2.121212e-05   p_cons 9.416061e-02   p_joint 4.343434e-05

Joint ci ratio: 5.843457e-01	ci left: 3.197064e-05	ci right 5.906750e-05	k: 44	n:1000000
Cons ci ratio: 1.215853e-02	ci left: 9.358627e-02	ci right 9.473208e-02	k: 94158	n:1000000
KS ci ratio: 8.357372e-01	ci left: 1.299938e-05	ci right 3.210055e-05	k: 21	n:1000000
NRAS   1000000 perm   537 sec   (1862 perm/sec)   p_kst 2.100000e-05   p_cons 9.415800e-02   p_joint 4.400000e-05

Joint ci ratio: 5.843458e-01	ci left: 3.165410e-05	ci right 5.848268e-05	k: 44	n:1010000
Cons ci ratio: 1.209837e-02	ci left: 9.358656e-02	ci right 9.472666e-02	k: 95097	n:1010000
KS ci ratio: 8.357373e-01	ci left: 1.287067e-05	ci right 3.178273e-05	k: 21	n:1010000
NRAS   1010000 perm   546 sec   (1849 perm/sec)   p_kst 2.079208e-05   p_cons 9.415545e-02   p_joint 4.356436e-05

Joint ci ratio: 5.843459e-01	ci left: 3.134376e-05	ci right 5.790932e-05	k: 44	n:1020000
Cons ci ratio: 1.203543e-02	ci left: 9.363867e-02	ci right 9.477344e-02	k: 96089	n:1020000
KS ci ratio: 8.357374e-01	ci left: 1.274449e-05	ci right 3.147113e-05	k: 21	n:1020000
NRAS   1020000 perm   555 sec   (1837 perm/sec)   p_kst 2.058824e-05   p_cons 9.420490e-02   p_joint 4.313725e-05

Joint ci ratio: 5.843460e-01	ci left: 3.103945e-05	ci right 5.734710e-05	k: 44	n:1030000
Cons ci ratio: 1.197564e-02	ci left: 9.365881e-02	ci right 9.478814e-02	k: 97049	n:1030000
KS ci ratio: 8.357375e-01	ci left: 1.262075e-05	ci right 3.116559e-05	k: 21	n:1030000
NRAS   1030000 perm   564 sec   (1825 perm/sec)   p_kst 2.038835e-05   p_cons 9.422233e-02   p_joint 4.271845e-05

Joint ci ratio: 5.657899e-01	ci left: 3.320579e-05	ci right 6.009574e-05	k: 47	n:1040000
Cons ci ratio: 1.191579e-02	ci left: 9.369199e-02	ci right 9.481604e-02	k: 98023	n:1040000
KS ci ratio: 8.357376e-01	ci left: 1.249940e-05	ci right 3.086592e-05	k: 21	n:1040000
NRAS   1040000 perm   574 sec   (1811 perm/sec)   p_kst 2.019231e-05   p_cons 9.425288e-02   p_joint 4.519231e-05

Joint ci ratio: 5.657901e-01	ci left: 3.288954e-05	ci right 5.952340e-05	k: 47	n:1050000
Cons ci ratio: 1.185875e-02	ci left: 9.369701e-02	ci right 9.481570e-02	k: 98968	n:1050000
KS ci ratio: 8.357377e-01	ci left: 1.238036e-05	ci right 3.057196e-05	k: 21	n:1050000
NRAS   1050000 perm   583 sec   (1800 perm/sec)   p_kst 2.000000e-05   p_cons 9.425524e-02   p_joint 4.476190e-05

Joint ci ratio: 5.657902e-01	ci left: 3.257926e-05	ci right 5.896187e-05	k: 47	n:1060000
Cons ci ratio: 1.179920e-02	ci left: 9.374994e-02	ci right 9.486360e-02	k: 99964	n:1060000
KS ci ratio: 8.357377e-01	ci left: 1.226356e-05	ci right 3.028355e-05	k: 21	n:1060000
NRAS   1060000 perm   592 sec   (1790 perm/sec)   p_kst 1.981132e-05   p_cons 9.430566e-02   p_joint 4.433962e-05

Joint ci ratio: 5.657903e-01	ci left: 3.227478e-05	ci right 5.841083e-05	k: 47	n:1070000
Cons ci ratio: 1.173880e-02	ci left: 9.382706e-02	ci right 9.493589e-02	k: 100987	n:1070000
KS ci ratio: 8.357378e-01	ci left: 1.214895e-05	ci right 3.000053e-05	k: 21	n:1070000
NRAS   1070000 perm   601 sec   (1779 perm/sec)   p_kst 1.962617e-05   p_cons 9.438037e-02   p_joint 4.392523e-05

Joint ci ratio: 5.599870e-01	ci left: 3.277000e-05	ci right 5.892646e-05	k: 48	n:1080000
Cons ci ratio: 1.168710e-02	ci left: 9.378917e-02	ci right 9.489264e-02	k: 101887	n:1080000
KS ci ratio: 8.357379e-01	ci left: 1.203646e-05	ci right 2.972275e-05	k: 21	n:1080000
NRAS   1080000 perm   611 sec   (1769 perm/sec)   p_kst 1.944444e-05   p_cons 9.433981e-02   p_joint 4.444444e-05

Joint ci ratio: 5.599872e-01	ci left: 3.246936e-05	ci right 5.838585e-05	k: 48	n:1090000
Cons ci ratio: 1.163370e-02	ci left: 9.378676e-02	ci right 9.488512e-02	k: 102825	n:1090000
KS ci ratio: 8.357380e-01	ci left: 1.192603e-05	ci right 2.945006e-05	k: 21	n:1090000
NRAS   1090000 perm   620 sec   (1758 perm/sec)   p_kst 1.926606e-05   p_cons 9.433486e-02   p_joint 4.403670e-05

Joint ci ratio: 3.089165e-01	ci left: 1.237908e-04	ci right 1.698182e-04	k: 160	n:1100000
Cons ci ratio: 1.158153e-02	ci left: 9.377715e-02	ci right 9.487044e-02	k: 103755	n:1100000
KS ci ratio: 8.173676e-01	ci left: 1.253393e-05	ci right 3.028008e-05	k: 22	n:1100000
NRAS   1100000 perm   629 sec   (1748 perm/sec)   p_kst 2.000000e-05   p_cons 9.432273e-02   p_joint 1.454545e-04

Joint ci ratio: 3.070154e-01	ci left: 1.243382e-04	ci right 1.702289e-04	k: 162	n:1110000
Cons ci ratio: 1.152634e-02	ci left: 9.382254e-02	ci right 9.491111e-02	k: 104746	n:1110000
KS ci ratio: 8.173677e-01	ci left: 1.242102e-05	ci right 3.000729e-05	k: 22	n:1110000
NRAS   1110000 perm   639 sec   (1738 perm/sec)   p_kst 1.981982e-05   p_cons 9.436577e-02   p_joint 1.459459e-04

Joint ci ratio: 3.070156e-01	ci left: 1.232280e-04	ci right 1.687091e-04	k: 162	n:1120000
Cons ci ratio: 1.147576e-02	ci left: 9.381013e-02	ci right 9.489376e-02	k: 105673	n:1120000
KS ci ratio: 8.173677e-01	ci left: 1.231011e-05	ci right 2.973937e-05	k: 22	n:1120000
NRAS   1120000 perm   649 sec   (1726 perm/sec)   p_kst 1.964286e-05   p_cons 9.435089e-02   p_joint 1.446429e-04

Joint ci ratio: 3.070158e-01	ci left: 1.221375e-04	ci right 1.672161e-04	k: 162	n:1130000
Cons ci ratio: 1.142769e-02	ci left: 9.377059e-02	ci right 9.484919e-02	k: 106569	n:1130000
KS ci ratio: 8.173678e-01	ci left: 1.220117e-05	ci right 2.947619e-05	k: 22	n:1130000
NRAS   1130000 perm   659 sec   (1716 perm/sec)   p_kst 1.946903e-05   p_cons 9.430885e-02   p_joint 1.433628e-04

Joint ci ratio: 3.060784e-01	ci left: 1.218758e-04	ci right 1.666937e-04	k: 163	n:1140000
Cons ci ratio: 1.137723e-02	ci left: 9.377637e-02	ci right 9.485025e-02	k: 107516	n:1140000
KS ci ratio: 8.173679e-01	ci left: 1.209415e-05	ci right 2.921763e-05	k: 22	n:1140000
NRAS   1140000 perm   668 sec   (1706 perm/sec)   p_kst 1.929825e-05   p_cons 9.431228e-02   p_joint 1.429825e-04

Joint ci ratio: 3.060786e-01	ci left: 1.208160e-04	ci right 1.652442e-04	k: 163	n:1150000
Cons ci ratio: 1.132841e-02	ci left: 9.376732e-02	ci right 9.483646e-02	k: 108446	n:1150000
KS ci ratio: 8.173680e-01	ci left: 1.198898e-05	ci right 2.896357e-05	k: 22	n:1150000
NRAS   1150000 perm   678 sec   (1696 perm/sec)   p_kst 1.913043e-05   p_cons 9.430087e-02   p_joint 1.417391e-04

Joint ci ratio: 3.042291e-01	ci left: 1.213667e-04	ci right 1.656755e-04	k: 165	n:1160000
Cons ci ratio: 1.128147e-02	ci left: 9.373952e-02	ci right 9.480388e-02	k: 109354	n:1160000
KS ci ratio: 8.173680e-01	ci left: 1.188563e-05	ci right 2.871388e-05	k: 22	n:1160000
NRAS   1160000 perm   688 sec   (1686 perm/sec)   p_kst 1.896552e-05   p_cons 9.427069e-02   p_joint 1.422414e-04

Joint ci ratio: 3.033169e-01	ci left: 1.211189e-04	ci right 1.651791e-04	k: 166	n:1170000
Cons ci ratio: 1.123364e-02	ci left: 9.373437e-02	ci right 9.479413e-02	k: 110288	n:1170000
KS ci ratio: 8.173681e-01	ci left: 1.178404e-05	ci right 2.846846e-05	k: 22	n:1170000
NRAS   1170000 perm   698 sec   (1677 perm/sec)   p_kst 1.880342e-05   p_cons 9.426325e-02   p_joint 1.418803e-04

Joint ci ratio: 3.033171e-01	ci left: 1.200925e-04	ci right 1.637793e-04	k: 166	n:1180000
Cons ci ratio: 1.118670e-02	ci left: 9.372509e-02	ci right 9.478029e-02	k: 111217	n:1180000
KS ci ratio: 8.173682e-01	ci left: 1.168417e-05	ci right 2.822721e-05	k: 22	n:1180000
NRAS   1180000 perm   708 sec   (1667 perm/sec)   p_kst 1.864407e-05   p_cons 9.425169e-02   p_joint 1.406780e-04

Joint ci ratio: 3.033173e-01	ci left: 1.190833e-04	ci right 1.624030e-04	k: 166	n:1190000
Cons ci ratio: 1.114050e-02	ci left: 9.371346e-02	ci right 9.476414e-02	k: 112143	n:1190000
KS ci ratio: 8.173683e-01	ci left: 1.158599e-05	ci right 2.799001e-05	k: 22	n:1190000
NRAS   1190000 perm   718 sec   (1657 perm/sec)   p_kst 1.848739e-05   p_cons 9.423782e-02   p_joint 1.394958e-04

Joint ci ratio: 3.015171e-01	ci left: 1.196311e-04	ci right 1.628424e-04	k: 168	n:1200000
Cons ci ratio: 1.109590e-02	ci left: 9.368624e-02	ci right 9.473239e-02	k: 113050	n:1200000
KS ci ratio: 8.001583e-01	ci left: 1.215006e-05	ci right 2.875927e-05	k: 23	n:1200000
NRAS   1200000 perm   728 sec   (1648 perm/sec)   p_kst 1.916667e-05   p_cons 9.420833e-02   p_joint 1.400000e-04

Joint ci ratio: 2.997486e-01	ci left: 1.201707e-04	ci right 1.632737e-04	k: 170	n:1210000
Cons ci ratio: 1.104798e-02	ci left: 9.371883e-02	ci right 9.476080e-02	k: 114029	n:1210000
KS ci ratio: 8.001584e-01	ci left: 1.204965e-05	ci right 2.852159e-05	k: 23	n:1210000
NRAS   1210000 perm   738 sec   (1639 perm/sec)   p_kst 1.900826e-05   p_cons 9.423884e-02   p_joint 1.404959e-04

Joint ci ratio: 3.128298e-01	ci left: 1.085916e-04	ci right 1.495814e-04	k: 156	n:1220000
Cons ci ratio: 1.100406e-02	ci left: 9.369857e-02	ci right 9.473614e-02	k: 114944	n:1220000
KS ci ratio: 8.001585e-01	ci left: 1.195088e-05	ci right 2.828781e-05	k: 23	n:1220000
NRAS   1220000 perm   749 sec   (1630 perm/sec)   p_kst 1.885246e-05   p_cons 9.421639e-02   p_joint 1.278689e-04

Joint ci ratio: 3.108560e-01	ci left: 1.092075e-04	ci right 1.501181e-04	k: 158	n:1230000
Cons ci ratio: 1.095726e-02	ci left: 9.373137e-02	ci right 9.476486e-02	k: 115924	n:1230000
KS ci ratio: 7.839917e-01	ci left: 1.250187e-05	ci right 2.903246e-05	k: 24	n:1230000
NRAS   1230000 perm   759 sec   (1621 perm/sec)   p_kst 1.951220e-05   p_cons 9.424715e-02   p_joint 1.284553e-04

Joint ci ratio: 3.098831e-01	ci left: 1.090705e-04	ci right 1.497766e-04	k: 159	n:1240000
Cons ci ratio: 1.091276e-02	ci left: 9.373709e-02	ci right 9.476642e-02	k: 116871	n:1240000
KS ci ratio: 7.687669e-01	ci left: 1.304737e-05	ci right 2.976190e-05	k: 25	n:1240000
NRAS   1240000 perm   770 sec   (1611 perm/sec)   p_kst 2.016129e-05   p_cons 9.425081e-02   p_joint 1.282258e-04

Joint ci ratio: 3.089193e-01	ci left: 1.089358e-04	ci right 1.494403e-04	k: 160	n:1250000
Cons ci ratio: 1.086935e-02	ci left: 9.373395e-02	ci right 9.475913e-02	k: 117807	n:1250000
KS ci ratio: 7.687669e-01	ci left: 1.294299e-05	ci right 2.952380e-05	k: 25	n:1250000
NRAS   1250000 perm   781 sec   (1602 perm/sec)   p_kst 2.000000e-05   p_cons 9.424560e-02   p_joint 1.280000e-04

Joint ci ratio: 2.843651e-01	ci left: 1.293777e-04	ci right 1.729747e-04	k: 189	n:1260000
Cons ci ratio: 1.082887e-02	ci left: 9.369287e-02	ci right 9.471376e-02	k: 118695	n:1260000
KS ci ratio: 8.173687e-01	ci left: 1.094232e-05	ci right 2.643501e-05	k: 22	n:1260000
NRAS   1260000 perm   791 sec   (1593 perm/sec)   p_kst 1.746032e-05   p_cons 9.420238e-02   p_joint 1.500000e-04

Joint ci ratio: 2.828801e-01	ci left: 1.298217e-04	ci right 1.732992e-04	k: 191	n:1270000
Cons ci ratio: 1.078785e-02	ci left: 9.366815e-02	ci right 9.468488e-02	k: 119603	n:1270000
KS ci ratio: 8.001588e-01	ci left: 1.148037e-05	ci right 2.717412e-05	k: 23	n:1270000
NRAS   1270000 perm   802 sec   (1584 perm/sec)   p_kst 1.811024e-05   p_cons 9.417559e-02   p_joint 1.503937e-04

Joint ci ratio: 2.814182e-01	ci left: 1.302595e-04	ci right 1.736180e-04	k: 193	n:1280000
Cons ci ratio: 1.074532e-02	ci left: 9.367500e-02	ci right 9.468777e-02	k: 120551	n:1280000
KS ci ratio: 8.001588e-01	ci left: 1.139068e-05	ci right 2.696183e-05	k: 23	n:1280000
NRAS   1280000 perm   813 sec   (1575 perm/sec)   p_kst 1.796875e-05   p_cons 9.418047e-02   p_joint 1.507813e-04

Joint ci ratio: 2.806957e-01	ci left: 1.299703e-04	ci right 1.731018e-04	k: 194	n:1290000
Cons ci ratio: 1.070081e-02	ci left: 9.372120e-02	ci right 9.473024e-02	k: 121550	n:1290000
KS ci ratio: 7.839921e-01	ci left: 1.192039e-05	ci right 2.768212e-05	k: 24	n:1290000
NRAS   1290000 perm   824 sec   (1566 perm/sec)   p_kst 1.860465e-05   p_cons 9.422481e-02   p_joint 1.503876e-04

Joint ci ratio: 2.792672e-01	ci left: 1.304010e-04	ci right 1.734165e-04	k: 196	n:1300000
Cons ci ratio: 1.065978e-02	ci left: 9.371987e-02	ci right 9.472501e-02	k: 122488	n:1300000
KS ci ratio: 7.839922e-01	ci left: 1.182869e-05	ci right 2.746918e-05	k: 24	n:1300000
NRAS   1300000 perm   835 sec   (1557 perm/sec)   p_kst 1.846154e-05   p_cons 9.422154e-02   p_joint 1.507692e-04

Joint ci ratio: 2.792673e-01	ci left: 1.294055e-04	ci right 1.720927e-04	k: 196	n:1310000
Cons ci ratio: 1.061903e-02	ci left: 9.372163e-02	ci right 9.472292e-02	k: 123430	n:1310000
KS ci ratio: 7.839922e-01	ci left: 1.173840e-05	ci right 2.725949e-05	k: 24	n:1310000
NRAS   1310000 perm   845 sec   (1549 perm/sec)   p_kst 1.832061e-05   p_cons 9.422137e-02   p_joint 1.496183e-04

Joint ci ratio: 2.851175e-01	ci left: 1.227933e-04	ci right 1.643007e-04	k: 188	n:1320000
Cons ci ratio: 1.057972e-02	ci left: 9.370749e-02	ci right 9.470490e-02	k: 124351	n:1320000
KS ci ratio: 7.839923e-01	ci left: 1.164947e-05	ci right 2.705298e-05	k: 24	n:1320000
NRAS   1320000 perm   856 sec   (1541 perm/sec)   p_kst 1.818182e-05   p_cons 9.420530e-02   p_joint 1.424242e-04

Joint ci ratio: 2.889661e-01	ci left: 1.183812e-04	ci right 1.590362e-04	k: 183	n:1330000
Cons ci ratio: 1.053909e-02	ci left: 9.372207e-02	ci right 9.471578e-02	k: 125310	n:1330000
KS ci ratio: 7.839923e-01	ci left: 1.156188e-05	ci right 2.684958e-05	k: 24	n:1330000
NRAS   1330000 perm   868 sec   (1533 perm/sec)   p_kst 1.804511e-05   p_cons 9.421805e-02   p_joint 1.375940e-04

Joint ci ratio: 2.881841e-01	ci left: 1.181900e-04	ci right 1.586495e-04	k: 184	n:1340000
Cons ci ratio: 1.049690e-02	ci left: 9.376921e-02	ci right 9.475941e-02	k: 126313	n:1340000
KS ci ratio: 7.839924e-01	ci left: 1.147559e-05	ci right 2.664921e-05	k: 24	n:1340000
NRAS   1340000 perm   879 sec   (1525 perm/sec)   p_kst 1.791045e-05   p_cons 9.426343e-02   p_joint 1.373134e-04

Joint ci ratio: 2.881843e-01	ci left: 1.173146e-04	ci right 1.574743e-04	k: 184	n:1350000
Cons ci ratio: 1.045825e-02	ci left: 9.376614e-02	ci right 9.475264e-02	k: 127249	n:1350000
KS ci ratio: 7.839925e-01	ci left: 1.139059e-05	ci right 2.645181e-05	k: 24	n:1350000
NRAS   1350000 perm   890 sec   (1517 perm/sec)   p_kst 1.777778e-05   p_cons 9.425852e-02   p_joint 1.362963e-04

Joint ci ratio: 2.874086e-01	ci left: 1.171342e-04	ci right 1.571046e-04	k: 185	n:1360000
Cons ci ratio: 1.042038e-02	ci left: 9.375725e-02	ci right 9.474007e-02	k: 128177	n:1360000
KS ci ratio: 7.839925e-01	ci left: 1.130684e-05	ci right 2.625731e-05	k: 24	n:1360000
NRAS   1360000 perm   902 sec   (1509 perm/sec)   p_kst 1.764706e-05   p_cons 9.424779e-02   p_joint 1.360294e-04

Joint ci ratio: 2.881846e-01	ci left: 1.156019e-04	ci right 1.551754e-04	k: 184	n:1370000
Cons ci ratio: 1.038018e-02	ci left: 9.379365e-02	ci right 9.477303e-02	k: 129167	n:1370000
KS ci ratio: 7.839926e-01	ci left: 1.122430e-05	ci right 2.606565e-05	k: 24	n:1370000
NRAS   1370000 perm   913 sec   (1501 perm/sec)   p_kst 1.751825e-05   p_cons 9.428248e-02   p_joint 1.343066e-04

Joint ci ratio: 2.858758e-01	ci left: 1.167817e-04	ci right 1.563809e-04	k: 187	n:1380000
Cons ci ratio: 1.034442e-02	ci left: 9.376374e-02	ci right 9.473942e-02	k: 130066	n:1380000
KS ci ratio: 7.839926e-01	ci left: 1.114297e-05	ci right 2.587677e-05	k: 24	n:1380000
NRAS   1380000 perm   925 sec   (1492 perm/sec)   p_kst 1.739130e-05   p_cons 9.425072e-02   p_joint 1.355072e-04

Joint ci ratio: 2.851186e-01	ci left: 1.166094e-04	ci right 1.560267e-04	k: 188	n:1390000
Cons ci ratio: 1.030799e-02	ci left: 9.375149e-02	ci right 9.472358e-02	k: 130989	n:1390000
KS ci ratio: 7.839927e-01	ci left: 1.106280e-05	ci right 2.569061e-05	k: 24	n:1390000
NRAS   1390000 perm   936 sec   (1484 perm/sec)   p_kst 1.726619e-05   p_cons 9.423669e-02   p_joint 1.352518e-04

Joint ci ratio: 2.836218e-01	ci left: 1.171032e-04	ci right 1.564424e-04	k: 190	n:1400000
Cons ci ratio: 1.027293e-02	ci left: 9.372303e-02	ci right 9.469151e-02	k: 131889	n:1400000
KS ci ratio: 7.839927e-01	ci left: 1.098378e-05	ci right 2.550711e-05	k: 24	n:1400000
NRAS   1400000 perm   948 sec   (1477 perm/sec)   p_kst 1.714286e-05   p_cons 9.420643e-02   p_joint 1.357143e-04

Joint ci ratio: 2.828823e-01	ci left: 1.169315e-04	ci right 1.560923e-04	k: 191	n:1410000
Cons ci ratio: 1.023653e-02	ci left: 9.372328e-02	ci right 9.468831e-02	k: 132829	n:1410000
KS ci ratio: 7.839928e-01	ci left: 1.090588e-05	ci right 2.532621e-05	k: 24	n:1410000
NRAS   1410000 perm   960 sec   (1469 perm/sec)   p_kst 1.702128e-05   p_cons 9.420496e-02   p_joint 1.354610e-04

Joint ci ratio: 2.997517e-01	ci left: 1.023988e-04	ci right 1.391279e-04	k: 170	n:1420000
Cons ci ratio: 1.019815e-02	ci left: 9.376289e-02	ci right 9.472468e-02	k: 133825	n:1420000
KS ci ratio: 7.543969e-01	ci left: 1.196064e-05	ci right 2.682807e-05	k: 26	n:1420000
NRAS   1420000 perm   972 sec   (1461 perm/sec)   p_kst 1.830986e-05   p_cons 9.424296e-02   p_joint 1.197183e-04

Joint ci ratio: 2.997519e-01	ci left: 1.016827e-04	ci right 1.381549e-04	k: 170	n:1430000
Cons ci ratio: 1.016336e-02	ci left: 9.374892e-02	ci right 9.470727e-02	k: 134745	n:1430000
KS ci ratio: 7.543970e-01	ci left: 1.187700e-05	ci right 2.664046e-05	k: 26	n:1430000
NRAS   1430000 perm   984 sec   (1453 perm/sec)   p_kst 1.818182e-05   p_cons 9.422727e-02   p_joint 1.188811e-04

Joint ci ratio: 2.997520e-01	ci left: 1.009766e-04	ci right 1.371955e-04	k: 170	n:1440000
Cons ci ratio: 1.012947e-02	ci left: 9.372614e-02	ci right 9.468105e-02	k: 135652	n:1440000
KS ci ratio: 7.543970e-01	ci left: 1.179452e-05	ci right 2.645546e-05	k: 26	n:1440000
NRAS   1440000 perm   996 sec   (1445 perm/sec)   p_kst 1.805556e-05   p_cons 9.420278e-02   p_joint 1.180556e-04

Joint ci ratio: 2.997521e-01	ci left: 1.002802e-04	ci right 1.362494e-04	k: 170	n:1450000
Cons ci ratio: 1.009746e-02	ci left: 9.367754e-02	ci right 9.462891e-02	k: 136521	n:1450000
KS ci ratio: 7.543971e-01	ci left: 1.171318e-05	ci right 2.627301e-05	k: 26	n:1450000
NRAS   1450000 perm   1009 sec   (1438 perm/sec)   p_kst 1.793103e-05   p_cons 9.415241e-02   p_joint 1.172414e-04

Joint ci ratio: 2.988795e-01	ci left: 1.002269e-04	ci right 1.360524e-04	k: 171	n:1460000
Cons ci ratio: 1.006276e-02	ci left: 9.368017e-02	ci right 9.462829e-02	k: 137464	n:1460000
KS ci ratio: 7.543971e-01	ci left: 1.163295e-05	ci right 2.609306e-05	k: 26	n:1460000
NRAS   1460000 perm   1021 sec   (1430 perm/sec)   p_kst 1.780822e-05   p_cons 9.415342e-02   p_joint 1.171233e-04

Joint ci ratio: 2.980144e-01	ci left: 1.001744e-04	ci right 1.358579e-04	k: 172	n:1470000
Cons ci ratio: 1.002618e-02	ci left: 9.372079e-02	ci right 9.466585e-02	k: 138463	n:1470000
KS ci ratio: 7.543972e-01	ci left: 1.155382e-05	ci right 2.591556e-05	k: 26	n:1470000
NRAS   1470000 perm   1033 sec   (1423 perm/sec)   p_kst 1.768707e-05   p_cons 9.419252e-02   p_joint 1.170068e-04

Joint ci ratio: 2.963065e-01	ci left: 1.007482e-04	ci right 1.363917e-04	k: 174	n:1480000
Cons ci ratio: 9.991531e-03	ci left: 9.373457e-02	ci right 9.467648e-02	k: 139423	n:1480000
KS ci ratio: 7.543972e-01	ci left: 1.147575e-05	ci right 2.574045e-05	k: 26	n:1480000
NRAS   1480000 perm   1046 sec   (1415 perm/sec)   p_kst 1.756757e-05   p_cons 9.420473e-02   p_joint 1.175676e-04

Joint ci ratio: 2.946276e-01	ci left: 1.013148e-04	ci right 1.369178e-04	k: 176	n:1490000
Cons ci ratio: 9.958340e-03	ci left: 9.372942e-02	ci right 9.466813e-02	k: 140355	n:1490000
KS ci ratio: 7.408032e-01	ci left: 1.194176e-05	ci right 2.636471e-05	k: 27	n:1490000
NRAS   1490000 perm   1058 sec   (1408 perm/sec)   p_kst 1.812081e-05   p_cons 9.419799e-02   p_joint 1.181208e-04

Joint ci ratio: 3.015214e-01	ci left: 9.570472e-05	ci right 1.302742e-04	k: 168	n:1500000
Cons ci ratio: 9.923849e-03	ci left: 9.375228e-02	ci right 9.468795e-02	k: 141329	n:1500000
KS ci ratio: 7.279184e-01	ci left: 1.240390e-05	ci right 2.697842e-05	k: 28	n:1500000
NRAS   1500000 perm   1071 sec   (1401 perm/sec)   p_kst 1.866667e-05   p_cons 9.421933e-02   p_joint 1.120000e-04

Joint ci ratio: 3.015215e-01	ci left: 9.507091e-05	ci right 1.294115e-04	k: 168	n:1510000
Cons ci ratio: 9.889560e-03	ci left: 9.377749e-02	ci right 9.471016e-02	k: 142307	n:1510000
KS ci ratio: 7.279185e-01	ci left: 1.232175e-05	ci right 2.679975e-05	k: 28	n:1510000
NRAS   1510000 perm   1084 sec   (1393 perm/sec)   p_kst 1.854305e-05   p_cons 9.424305e-02   p_joint 1.112583e-04

Joint ci ratio: 4.825080e-01	ci left: 3.300385e-05	ci right 5.450484e-05	k: 65	n:1520000
Cons ci ratio: 1.046228e-02	ci left: 8.410687e-02	ci right 8.499209e-02	k: 128514	n:1520000
KS ci ratio: 7.279185e-01	ci left: 1.224069e-05	ci right 2.662344e-05	k: 28	n:1520000
NRAS   1520000 perm   1096 sec   (1386 perm/sec)   p_kst 1.842105e-05   p_cons 8.454868e-02   p_joint 4.276316e-05

Joint ci ratio: 4.788936e-01	ci left: 3.336250e-05	ci right 5.488084e-05	k: 66	n:1530000
Cons ci ratio: 1.042986e-02	ci left: 8.408126e-02	ci right 8.496345e-02	k: 129318	n:1530000
KS ci ratio: 7.279186e-01	ci left: 1.216068e-05	ci right 2.644943e-05	k: 28	n:1530000
NRAS   1530000 perm   1109 sec   (1379 perm/sec)   p_kst 1.830065e-05   p_cons 8.452157e-02   p_joint 4.313725e-05

Joint ci ratio: 4.788936e-01	ci left: 3.314586e-05	ci right 5.452448e-05	k: 66	n:1540000
Cons ci ratio: 1.039456e-02	ci left: 8.410328e-02	ci right 8.498270e-02	k: 130195	n:1540000
KS ci ratio: 7.279186e-01	ci left: 1.208172e-05	ci right 2.627768e-05	k: 28	n:1540000
NRAS   1540000 perm   1122 sec   (1372 perm/sec)   p_kst 1.818182e-05   p_cons 8.454221e-02   p_joint 4.285714e-05

Joint ci ratio: 4.788937e-01	ci left: 3.293202e-05	ci right 5.417271e-05	k: 66	n:1550000
Cons ci ratio: 1.036190e-02	ci left: 8.409091e-02	ci right 8.496742e-02	k: 131019	n:1550000
KS ci ratio: 7.279187e-01	ci left: 1.200377e-05	ci right 2.610815e-05	k: 28	n:1550000
NRAS   1550000 perm   1135 sec   (1366 perm/sec)   p_kst 1.806452e-05   p_cons 8.452839e-02   p_joint 4.258065e-05

Joint ci ratio: 4.753593e-01	ci left: 3.328482e-05	ci right 5.454304e-05	k: 67	n:1560000
Cons ci ratio: 1.032754e-02	ci left: 8.410876e-02	ci right 8.498253e-02	k: 131890	n:1560000
KS ci ratio: 7.156837e-01	ci left: 1.244988e-05	ci right 2.669786e-05	k: 29	n:1560000
NRAS   1560000 perm   1148 sec   (1359 perm/sec)   p_kst 1.858974e-05   p_cons 8.454487e-02   p_joint 4.294872e-05

Joint ci ratio: 4.862059e-01	ci left: 3.139364e-05	ci right 5.205485e-05	k: 64	n:1570000
Cons ci ratio: 1.029525e-02	ci left: 8.410033e-02	ci right 8.497127e-02	k: 132720	n:1570000
KS ci ratio: 7.156837e-01	ci left: 1.237058e-05	ci right 2.652782e-05	k: 29	n:1570000
NRAS   1570000 perm   1161 sec   (1352 perm/sec)   p_kst 1.847134e-05   p_cons 8.453503e-02   p_joint 4.076433e-05

Joint ci ratio: 4.862060e-01	ci left: 3.119494e-05	ci right 5.172539e-05	k: 64	n:1580000
Cons ci ratio: 1.026347e-02	ci left: 8.408886e-02	ci right 8.495697e-02	k: 133545	n:1580000
KS ci ratio: 7.156838e-01	ci left: 1.229228e-05	ci right 2.635992e-05	k: 29	n:1580000
NRAS   1580000 perm   1174 sec   (1346 perm/sec)   p_kst 1.835443e-05   p_cons 8.452215e-02   p_joint 4.050633e-05

Joint ci ratio: 4.862061e-01	ci left: 3.099875e-05	ci right 5.140007e-05	k: 64	n:1590000
Cons ci ratio: 1.023012e-02	ci left: 8.410577e-02	ci right 8.497122e-02	k: 134415	n:1590000
KS ci ratio: 7.156838e-01	ci left: 1.221497e-05	ci right 2.619413e-05	k: 29	n:1590000
NRAS   1590000 perm   1187 sec   (1340 perm/sec)   p_kst 1.823899e-05   p_cons 8.453774e-02   p_joint 4.025157e-05

Joint ci ratio: 4.825085e-01	ci left: 3.135365e-05	ci right 5.177961e-05	k: 65	n:1600000
Cons ci ratio: 1.019906e-02	ci left: 8.409254e-02	ci right 8.495521e-02	k: 135237	n:1600000
KS ci ratio: 7.156839e-01	ci left: 1.213863e-05	ci right 2.603042e-05	k: 29	n:1600000
NRAS   1600000 perm   1200 sec   (1334 perm/sec)   p_kst 1.812500e-05   p_cons 8.452313e-02   p_joint 4.062500e-05

Joint ci ratio: 4.825086e-01	ci left: 3.115891e-05	ci right 5.145800e-05	k: 65	n:1610000
Cons ci ratio: 1.016567e-02	ci left: 8.411914e-02	ci right 8.497925e-02	k: 136123	n:1610000
KS ci ratio: 7.156839e-01	ci left: 1.206323e-05	ci right 2.586874e-05	k: 29	n:1610000
NRAS   1610000 perm   1213 sec   (1328 perm/sec)   p_kst 1.801242e-05   p_cons 8.454845e-02   p_joint 4.037267e-05

Joint ci ratio: 4.825087e-01	ci left: 3.096657e-05	ci right 5.114036e-05	k: 65	n:1620000
Cons ci ratio: 1.013580e-02	ci left: 8.409677e-02	ci right 8.495410e-02	k: 136930	n:1620000
KS ci ratio: 7.156840e-01	ci left: 1.198877e-05	ci right 2.570906e-05	k: 29	n:1620000
NRAS   1620000 perm   1226 sec   (1322 perm/sec)   p_kst 1.790123e-05   p_cons 8.452469e-02   p_joint 4.012346e-05

Joint ci ratio: 4.788942e-01	ci left: 3.131571e-05	ci right 5.151394e-05	k: 66	n:1630000
Cons ci ratio: 1.010399e-02	ci left: 8.410834e-02	ci right 8.496308e-02	k: 137792	n:1630000
KS ci ratio: 7.156840e-01	ci left: 1.191522e-05	ci right 2.555133e-05	k: 29	n:1630000
NRAS   1630000 perm   1239 sec   (1316 perm/sec)   p_kst 1.779141e-05   p_cons 8.453497e-02   p_joint 4.049080e-05

Joint ci ratio: 4.788943e-01	ci left: 3.112476e-05	ci right 5.119983e-05	k: 66	n:1640000
Cons ci ratio: 1.007340e-02	ci left: 8.410578e-02	ci right 8.495789e-02	k: 138631	n:1640000
KS ci ratio: 7.156840e-01	ci left: 1.184256e-05	ci right 2.539553e-05	k: 29	n:1640000
NRAS   1640000 perm   1252 sec   (1310 perm/sec)   p_kst 1.768293e-05   p_cons 8.453110e-02   p_joint 4.024390e-05

Joint ci ratio: 4.788944e-01	ci left: 3.093613e-05	ci right 5.088953e-05	k: 66	n:1650000
Cons ci ratio: 1.004299e-02	ci left: 8.410446e-02	ci right 8.495397e-02	k: 139472	n:1650000
KS ci ratio: 7.156841e-01	ci left: 1.177079e-05	ci right 2.524162e-05	k: 29	n:1650000
NRAS   1650000 perm   1266 sec   (1304 perm/sec)   p_kst 1.757576e-05   p_cons 8.452848e-02   p_joint 4.000000e-05

Joint ci ratio: 4.753599e-01	ci left: 3.127970e-05	ci right 5.125733e-05	k: 67	n:1660000
Cons ci ratio: 1.001286e-02	ci left: 8.410316e-02	ci right 8.495010e-02	k: 140313	n:1660000
KS ci ratio: 7.156841e-01	ci left: 1.169988e-05	ci right 2.508957e-05	k: 29	n:1660000
NRAS   1660000 perm   1280 sec   (1297 perm/sec)   p_kst 1.746988e-05   p_cons 8.452590e-02   p_joint 4.036145e-05

Joint ci ratio: 4.753600e-01	ci left: 3.109239e-05	ci right 5.095040e-05	k: 67	n:1670000
Cons ci ratio: 9.982117e-03	ci left: 8.411562e-02	ci right 8.496007e-02	k: 141177	n:1670000
KS ci ratio: 7.156842e-01	ci left: 1.162982e-05	ci right 2.493933e-05	k: 29	n:1670000
NRAS   1670000 perm   1294 sec   (1291 perm/sec)   p_kst 1.736527e-05   p_cons 8.453713e-02   p_joint 4.011976e-05

Joint ci ratio: 4.825090e-01	ci left: 2.986062e-05	ci right 4.931393e-05	k: 65	n:1680000
Cons ci ratio: 9.952455e-03	ci left: 8.411547e-02	ci right 8.495739e-02	k: 142020	n:1680000
KS ci ratio: 7.156842e-01	ci left: 1.156060e-05	ci right 2.479088e-05	k: 29	n:1680000
NRAS   1680000 perm   1307 sec   (1285 perm/sec)   p_kst 1.726190e-05   p_cons 8.453571e-02   p_joint 3.869048e-05

Joint ci ratio: 4.825091e-01	ci left: 2.968392e-05	ci right 4.902213e-05	k: 65	n:1690000
Cons ci ratio: 9.924726e-03	ci left: 8.408935e-02	ci right 8.492865e-02	k: 142819	n:1690000
KS ci ratio: 7.156842e-01	ci left: 1.149219e-05	ci right 2.464419e-05	k: 29	n:1690000
NRAS   1690000 perm   1321 sec   (1279 perm/sec)   p_kst 1.715976e-05   p_cons 8.450828e-02   p_joint 3.846154e-05

Joint ci ratio: 4.788946e-01	ci left: 3.002624e-05	ci right 4.939279e-05	k: 66	n:1700000
Cons ci ratio: 9.897001e-03	ci left: 8.406705e-02	ci right 8.490377e-02	k: 143624	n:1700000
KS ci ratio: 7.156843e-01	ci left: 1.142459e-05	ci right 2.449922e-05	k: 29	n:1700000
NRAS   1700000 perm   1335 sec   (1274 perm/sec)   p_kst 1.705882e-05   p_cons 8.448471e-02   p_joint 3.882353e-05

Joint ci ratio: 4.788947e-01	ci left: 2.985065e-05	ci right 4.910394e-05	k: 66	n:1710000
Cons ci ratio: 9.867604e-03	ci left: 8.407478e-02	ci right 8.490908e-02	k: 144480	n:1710000
KS ci ratio: 7.156843e-01	ci left: 1.135778e-05	ci right 2.435596e-05	k: 29	n:1710000
NRAS   1710000 perm   1349 sec   (1268 perm/sec)   p_kst 1.695906e-05   p_cons 8.449123e-02   p_joint 3.859649e-05

Joint ci ratio: 4.825092e-01	ci left: 2.916618e-05	ci right 4.816710e-05	k: 65	n:1720000
Cons ci ratio: 9.839355e-03	ci left: 8.406850e-02	ci right 8.490034e-02	k: 145312	n:1720000
KS ci ratio: 7.156844e-01	ci left: 1.129175e-05	ci right 2.421435e-05	k: 29	n:1720000
NRAS   1720000 perm   1363 sec   (1262 perm/sec)   p_kst 1.686047e-05   p_cons 8.448372e-02   p_joint 3.779070e-05

Joint ci ratio: 4.938644e-01	ci left: 2.747701e-05	ci right 4.594266e-05	k: 62	n:1730000
Cons ci ratio: 9.812484e-03	ci left: 8.404442e-02	ci right 8.487373e-02	k: 146113	n:1730000
KS ci ratio: 7.156844e-01	ci left: 1.122648e-05	ci right 2.407438e-05	k: 29	n:1730000
NRAS   1730000 perm   1377 sec   (1257 perm/sec)   p_kst 1.676301e-05   p_cons 8.445838e-02   p_joint 3.583815e-05

Joint ci ratio: 4.862069e-01	ci left: 2.832643e-05	ci right 4.696905e-05	k: 64	n:1740000
Cons ci ratio: 9.784850e-03	ci left: 8.403610e-02	ci right 8.486298e-02	k: 146941	n:1740000
KS ci ratio: 7.040463e-01	ci left: 1.163272e-05	ci right 2.461305e-05	k: 30	n:1740000
NRAS   1740000 perm   1391 sec   (1251 perm/sec)   p_kst 1.724138e-05   p_cons 8.444885e-02   p_joint 3.678161e-05

Joint ci ratio: 4.862070e-01	ci left: 2.816457e-05	ci right 4.670066e-05	k: 64	n:1750000
Cons ci ratio: 9.757087e-03	ci left: 8.403358e-02	ci right 8.485808e-02	k: 147779	n:1750000
KS ci ratio: 7.040463e-01	ci left: 1.156624e-05	ci right 2.447240e-05	k: 30	n:1750000
NRAS   1750000 perm   1405 sec   (1245 perm/sec)   p_kst 1.714286e-05   p_cons 8.444514e-02   p_joint 3.657143e-05

Joint ci ratio: 4.825095e-01	ci left: 2.850331e-05	ci right 4.707240e-05	k: 65	n:1760000
Cons ci ratio: 9.730453e-03	ci left: 8.401692e-02	ci right 8.483899e-02	k: 148592	n:1760000
KS ci ratio: 7.040464e-01	ci left: 1.150053e-05	ci right 2.433336e-05	k: 30	n:1760000
NRAS   1760000 perm   1419 sec   (1240 perm/sec)   p_kst 1.704545e-05   p_cons 8.442727e-02   p_joint 3.693182e-05

Joint ci ratio: 4.825095e-01	ci left: 2.834227e-05	ci right 4.680645e-05	k: 65	n:1770000
Cons ci ratio: 9.704356e-03	ci left: 8.399538e-02	ci right 8.481502e-02	k: 149396	n:1770000
KS ci ratio: 7.040464e-01	ci left: 1.143555e-05	ci right 2.419588e-05	k: 30	n:1770000
NRAS   1770000 perm   1434 sec   (1235 perm/sec)   p_kst 1.694915e-05   p_cons 8.440452e-02   p_joint 3.672316e-05

Joint ci ratio: 4.825096e-01	ci left: 2.818305e-05	ci right 4.654349e-05	k: 65	n:1780000
Cons ci ratio: 9.677376e-03	ci left: 8.399146e-02	ci right 8.480877e-02	k: 150231	n:1780000
KS ci ratio: 7.040465e-01	ci left: 1.137131e-05	ci right 2.405995e-05	k: 30	n:1780000
NRAS   1780000 perm   1448 sec   (1229 perm/sec)   p_kst 1.685393e-05   p_cons 8.439944e-02   p_joint 3.651685e-05

Joint ci ratio: 4.825096e-01	ci left: 2.802560e-05	ci right 4.628348e-05	k: 65	n:1790000
Cons ci ratio: 9.649958e-03	ci left: 8.399817e-02	ci right 8.481323e-02	k: 151085	n:1790000
KS ci ratio: 7.040465e-01	ci left: 1.130778e-05	ci right 2.392554e-05	k: 30	n:1790000
NRAS   1790000 perm   1462 sec   (1224 perm/sec)   p_kst 1.675978e-05   p_cons 8.440503e-02   p_joint 3.631285e-05

Joint ci ratio: 4.788952e-01	ci left: 2.835811e-05	ci right 4.664876e-05	k: 66	n:1800000
Cons ci ratio: 9.623601e-03	ci left: 8.399152e-02	ci right 8.480427e-02	k: 151915	n:1800000
KS ci ratio: 7.040465e-01	ci left: 1.124496e-05	ci right 2.379262e-05	k: 30	n:1800000
NRAS   1800000 perm   1477 sec   (1219 perm/sec)   p_kst 1.666667e-05   p_cons 8.439722e-02   p_joint 3.666667e-05

Joint ci ratio: 4.788952e-01	ci left: 2.820143e-05	ci right 4.639103e-05	k: 66	n:1810000
Cons ci ratio: 9.596568e-03	ci left: 8.399927e-02	ci right 8.480980e-02	k: 152771	n:1810000
KS ci ratio: 7.040466e-01	ci left: 1.118283e-05	ci right 2.366117e-05	k: 30	n:1810000
NRAS   1810000 perm   1492 sec   (1213 perm/sec)   p_kst 1.657459e-05   p_cons 8.440387e-02   p_joint 3.646409e-05

Joint ci ratio: 4.753608e-01	ci left: 2.852982e-05	ci right 4.675121e-05	k: 67	n:1820000
Cons ci ratio: 9.570373e-03	ci left: 8.399707e-02	ci right 8.480535e-02	k: 153609	n:1820000
KS ci ratio: 7.040466e-01	ci left: 1.112139e-05	ci right 2.353116e-05	k: 30	n:1820000
NRAS   1820000 perm   1507 sec   (1208 perm/sec)   p_kst 1.648352e-05   p_cons 8.440055e-02   p_joint 3.681319e-05

Joint ci ratio: 4.753609e-01	ci left: 2.837392e-05	ci right 4.649574e-05	k: 67	n:1830000
Cons ci ratio: 9.544526e-03	ci left: 8.399272e-02	ci right 8.479876e-02	k: 154443	n:1830000
KS ci ratio: 7.040466e-01	ci left: 1.106061e-05	ci right 2.340258e-05	k: 30	n:1830000
NRAS   1830000 perm   1521 sec   (1203 perm/sec)   p_kst 1.639344e-05   p_cons 8.439508e-02   p_joint 3.661202e-05

Joint ci ratio: 4.753609e-01	ci left: 2.821972e-05	ci right 4.624305e-05	k: 67	n:1840000
Cons ci ratio: 9.518319e-03	ci left: 8.399763e-02	ci right 8.480150e-02	k: 155294	n:1840000
KS ci ratio: 7.040467e-01	ci left: 1.100050e-05	ci right 2.327539e-05	k: 30	n:1840000
NRAS   1840000 perm   1536 sec   (1198 perm/sec)   p_kst 1.630435e-05   p_cons 8.439891e-02   p_joint 3.641304e-05

Joint ci ratio: 4.753610e-01	ci left: 2.806718e-05	ci right 4.599309e-05	k: 67	n:1850000
Cons ci ratio: 9.491961e-03	ci left: 8.400843e-02	ci right 8.481017e-02	k: 156156	n:1850000
KS ci ratio: 7.040467e-01	ci left: 1.094104e-05	ci right 2.314958e-05	k: 30	n:1850000
NRAS   1850000 perm   1551 sec   (1193 perm/sec)   p_kst 1.621622e-05   p_cons 8.440865e-02   p_joint 3.621622e-05

Joint ci ratio: 4.753610e-01	ci left: 2.791628e-05	ci right 4.574582e-05	k: 67	n:1860000
Cons ci ratio: 9.464900e-03	ci left: 8.403414e-02	ci right 8.483382e-02	k: 157046	n:1860000
KS ci ratio: 7.040467e-01	ci left: 1.088222e-05	ci right 2.302512e-05	k: 30	n:1860000
NRAS   1860000 perm   1565 sec   (1188 perm/sec)   p_kst 1.612903e-05   p_cons 8.443333e-02   p_joint 3.602151e-05

Joint ci ratio: 4.685207e-01	ci left: 2.870926e-05	ci right 4.669705e-05	k: 69	n:1870000
Cons ci ratio: 9.440353e-03	ci left: 8.402222e-02	ci right 8.481971e-02	k: 157866	n:1870000
KS ci ratio: 7.040468e-01	ci left: 1.082402e-05	ci right 2.290199e-05	k: 30	n:1870000
NRAS   1870000 perm   1580 sec   (1183 perm/sec)   p_kst 1.604278e-05   p_cons 8.442032e-02   p_joint 3.689840e-05

Joint ci ratio: 4.685208e-01	ci left: 2.855655e-05	ci right 4.644867e-05	k: 69	n:1880000
Cons ci ratio: 9.414215e-03	ci left: 8.403963e-02	ci right 8.483506e-02	k: 158741	n:1880000
KS ci ratio: 7.040468e-01	ci left: 1.076645e-05	ci right 2.278017e-05	k: 30	n:1880000
NRAS   1880000 perm   1595 sec   (1179 perm/sec)   p_kst 1.595745e-05   p_cons 8.443670e-02   p_joint 3.670213e-05

Joint ci ratio: 4.496457e-01	ci left: 3.121296e-05	ci right 4.974216e-05	k: 75	n:1890000
Cons ci ratio: 9.389899e-03	ci left: 8.403046e-02	ci right 8.482373e-02	k: 159566	n:1890000
KS ci ratio: 7.040468e-01	ci left: 1.070948e-05	ci right 2.265964e-05	k: 30	n:1890000
NRAS   1890000 perm   1610 sec   (1174 perm/sec)   p_kst 1.587302e-05   p_cons 8.442646e-02   p_joint 3.968254e-05

Joint ci ratio: 4.496457e-01	ci left: 3.104868e-05	ci right 4.948036e-05	k: 75	n:1900000
Cons ci ratio: 9.365866e-03	ci left: 8.401980e-02	ci right 8.481094e-02	k: 160388	n:1900000
KS ci ratio: 7.040469e-01	ci left: 1.065312e-05	ci right 2.254038e-05	k: 30	n:1900000
NRAS   1900000 perm   1625 sec   (1169 perm/sec)   p_kst 1.578947e-05   p_cons 8.441474e-02   p_joint 3.947368e-05

Joint ci ratio: 4.496458e-01	ci left: 3.088612e-05	ci right 4.922130e-05	k: 75	n:1910000
Cons ci ratio: 9.342492e-03	ci left: 8.400143e-02	ci right 8.479041e-02	k: 161195	n:1910000
KS ci ratio: 7.040469e-01	ci left: 1.059734e-05	ci right 2.242237e-05	k: 30	n:1910000
NRAS   1910000 perm   1640 sec   (1164 perm/sec)   p_kst 1.570681e-05   p_cons 8.439529e-02   p_joint 3.926702e-05

Joint ci ratio: 4.496458e-01	ci left: 3.072525e-05	ci right 4.896494e-05	k: 75	n:1920000
Cons ci ratio: 9.317690e-03	ci left: 8.400976e-02	ci right 8.479670e-02	k: 162053	n:1920000
KS ci ratio: 7.040469e-01	ci left: 1.054215e-05	ci right 2.230558e-05	k: 30	n:1920000
NRAS   1920000 perm   1655 sec   (1160 perm/sec)   p_kst 1.562500e-05   p_cons 8.440260e-02   p_joint 3.906250e-05

Joint ci ratio: 4.467164e-01	ci left: 3.102569e-05	ci right 4.928749e-05	k: 76	n:1930000
Cons ci ratio: 9.293333e-03	ci left: 8.401386e-02	ci right 8.479878e-02	k: 162903	n:1930000
KS ci ratio: 6.929587e-01	ci left: 1.091349e-05	ci right 2.279890e-05	k: 31	n:1930000
NRAS   1930000 perm   1671 sec   (1155 perm/sec)   p_kst 1.606218e-05   p_cons 8.440570e-02   p_joint 3.937824e-05

Joint ci ratio: 4.467165e-01	ci left: 3.086577e-05	ci right 4.903344e-05	k: 76	n:1940000
Cons ci ratio: 9.270558e-03	ci left: 8.399478e-02	ci right 8.477759e-02	k: 163708	n:1940000
KS ci ratio: 6.929588e-01	ci left: 1.085724e-05	ci right 2.268138e-05	k: 31	n:1940000
NRAS   1940000 perm   1686 sec   (1151 perm/sec)   p_kst 1.597938e-05   p_cons 8.438557e-02   p_joint 3.917526e-05

Joint ci ratio: 4.438436e-01	ci left: 3.116279e-05	ci right 4.935196e-05	k: 77	n:1950000
Cons ci ratio: 9.245986e-03	ci left: 8.400865e-02	ci right 8.478950e-02	k: 164577	n:1950000
KS ci ratio: 6.929588e-01	ci left: 1.080156e-05	ci right 2.256507e-05	k: 31	n:1950000
NRAS   1950000 perm   1701 sec   (1146 perm/sec)   p_kst 1.589744e-05   p_cons 8.439846e-02   p_joint 3.948718e-05

Joint ci ratio: 4.438437e-01	ci left: 3.100379e-05	ci right 4.910016e-05	k: 77	n:1960000
Cons ci ratio: 9.222612e-03	ci left: 8.400558e-02	ci right 8.478442e-02	k: 165413	n:1960000
KS ci ratio: 6.929588e-01	ci left: 1.074645e-05	ci right 2.244994e-05	k: 31	n:1960000
NRAS   1960000 perm   1717 sec   (1141 perm/sec)   p_kst 1.581633e-05   p_cons 8.439439e-02   p_joint 3.928571e-05

Joint ci ratio: 4.438437e-01	ci left: 3.084641e-05	ci right 4.885092e-05	k: 77	n:1970000
Cons ci ratio: 9.198992e-03	ci left: 8.400964e-02	ci right 8.478651e-02	k: 166263	n:1970000
KS ci ratio: 6.929588e-01	ci left: 1.069190e-05	ci right 2.233598e-05	k: 31	n:1970000
NRAS   1970000 perm   1733 sec   (1137 perm/sec)   p_kst 1.573604e-05   p_cons 8.439746e-02   p_joint 3.908629e-05

Joint ci ratio: 4.382604e-01	ci left: 3.158853e-05	ci right 4.972580e-05	k: 79	n:1980000
Cons ci ratio: 9.176332e-03	ci left: 8.400055e-02	ci right 8.477541e-02	k: 167087	n:1980000
KS ci ratio: 6.823786e-01	ci left: 1.105456e-05	ci right 2.281530e-05	k: 32	n:1980000
NRAS   1980000 perm   1749 sec   (1132 perm/sec)   p_kst 1.616162e-05   p_cons 8.438737e-02   p_joint 3.989899e-05

Joint ci ratio: 4.382604e-01	ci left: 3.142979e-05	ci right 4.947592e-05	k: 79	n:1990000
Cons ci ratio: 9.153541e-03	ci left: 8.399657e-02	ci right 8.476946e-02	k: 167921	n:1990000
KS ci ratio: 6.823786e-01	ci left: 1.099901e-05	ci right 2.270065e-05	k: 32	n:1990000
NRAS   1990000 perm   1764 sec   (1128 perm/sec)   p_kst 1.608040e-05   p_cons 8.438241e-02   p_joint 3.969849e-05

Joint ci ratio: 4.410256e-01	ci left: 3.082800e-05	ci right 4.867353e-05	k: 78	n:2000000
Cons ci ratio: 9.131126e-03	ci left: 8.398914e-02	ci right 8.476006e-02	k: 168748	n:2000000
KS ci ratio: 6.823786e-01	ci left: 1.094401e-05	ci right 2.258715e-05	k: 32	n:2000000
NRAS   2000000 perm   1780 sec   (1123 perm/sec)   p_kst 1.600000e-05   p_cons 8.437400e-02   p_joint 3.900000e-05

Joint ci ratio: 4.410257e-01	ci left: 3.067463e-05	ci right 4.843137e-05	k: 78	n:2010000
Cons ci ratio: 9.108727e-03	ci left: 8.398427e-02	ci right 8.475324e-02	k: 169580	n:2010000
KS ci ratio: 6.823786e-01	ci left: 1.088957e-05	ci right 2.247478e-05	k: 32	n:2010000
NRAS   2010000 perm   1796 sec   (1119 perm/sec)   p_kst 1.592040e-05   p_cons 8.436816e-02   p_joint 3.880597e-05

Joint ci ratio: 4.410257e-01	ci left: 3.052277e-05	ci right 4.819162e-05	k: 78	n:2020000
Cons ci ratio: 9.085795e-03	ci left: 8.399131e-02	ci right 8.475840e-02	k: 170436	n:2020000
KS ci ratio: 6.823787e-01	ci left: 1.083566e-05	ci right 2.236352e-05	k: 32	n:2020000
NRAS   2020000 perm   1812 sec   (1115 perm/sec)   p_kst 1.584158e-05   p_cons 8.437426e-02   p_joint 3.861386e-05

Joint ci ratio: 4.410258e-01	ci left: 3.037241e-05	ci right 4.795422e-05	k: 78	n:2030000
Cons ci ratio: 9.063525e-03	ci left: 8.398992e-02	ci right 8.475511e-02	k: 171275	n:2030000
KS ci ratio: 6.823787e-01	ci left: 1.078228e-05	ci right 2.225335e-05	k: 32	n:2030000
NRAS   2030000 perm   1828 sec   (1111 perm/sec)   p_kst 1.576355e-05   p_cons 8.437192e-02   p_joint 3.842365e-05

Joint ci ratio: 4.438440e-01	ci left: 2.978795e-05	ci right 4.717467e-05	k: 77	n:2040000
Cons ci ratio: 9.041907e-03	ci left: 8.398023e-02	ci right 8.474350e-02	k: 172097	n:2040000
KS ci ratio: 6.722687e-01	ci left: 1.113516e-05	ci right 2.271770e-05	k: 33	n:2040000
NRAS   2040000 perm   1844 sec   (1107 perm/sec)   p_kst 1.617647e-05   p_cons 8.436127e-02   p_joint 3.774510e-05

Joint ci ratio: 4.753618e-01	ci left: 2.532891e-05	ci right 4.150598e-05	k: 67	n:2050000
Cons ci ratio: 8.013193e-03	ci left: 1.041147e-01	ci right 1.049528e-01	k: 214293	n:2050000
KS ci ratio: 6.722687e-01	ci left: 1.108085e-05	ci right 2.260689e-05	k: 33	n:2050000
NRAS   2050000 perm   1860 sec   (1102 perm/sec)   p_kst 1.609756e-05   p_cons 1.045332e-01   p_joint 3.268293e-05

Joint ci ratio: 4.719045e-01	ci left: 2.563342e-05	ci right 4.184749e-05	k: 68	n:2060000
Cons ci ratio: 7.993561e-03	ci left: 1.041194e-01	ci right 1.049555e-01	k: 215346	n:2060000
KS ci ratio: 6.625951e-01	ci left: 1.143012e-05	ci right 2.306380e-05	k: 34	n:2060000
NRAS   2060000 perm   1875 sec   (1098 perm/sec)   p_kst 1.650485e-05   p_cons 1.045369e-01   p_joint 3.300971e-05

Joint ci ratio: 4.719046e-01	ci left: 2.550959e-05	ci right 4.164533e-05	k: 68	n:2070000
Cons ci ratio: 7.974032e-03	ci left: 1.041251e-01	ci right 1.049591e-01	k: 216401	n:2070000
KS ci ratio: 6.625952e-01	ci left: 1.137490e-05	ci right 2.295239e-05	k: 34	n:2070000
NRAS   2070000 perm   1892 sec   (1094 perm/sec)   p_kst 1.642512e-05   p_cons 1.045415e-01   p_joint 3.285024e-05

Joint ci ratio: 4.719046e-01	ci left: 2.538694e-05	ci right 4.144511e-05	k: 68	n:2080000
Cons ci ratio: 7.954869e-03	ci left: 1.041254e-01	ci right 1.049575e-01	k: 217445	n:2080000
KS ci ratio: 6.625952e-01	ci left: 1.132021e-05	ci right 2.284204e-05	k: 34	n:2080000
NRAS   2080000 perm   1908 sec   (1090 perm/sec)   p_kst 1.634615e-05   p_cons 1.045409e-01   p_joint 3.269231e-05

Joint ci ratio: 4.719046e-01	ci left: 2.526547e-05	ci right 4.124681e-05	k: 68	n:2090000
Cons ci ratio: 7.935702e-03	ci left: 1.041290e-01	ci right 1.049591e-01	k: 218496	n:2090000
KS ci ratio: 6.625952e-01	ci left: 1.126605e-05	ci right 2.273275e-05	k: 34	n:2090000
NRAS   2090000 perm   1925 sec   (1086 perm/sec)   p_kst 1.626794e-05   p_cons 1.045435e-01   p_joint 3.253589e-05

Joint ci ratio: 4.719047e-01	ci left: 2.514516e-05	ci right 4.105039e-05	k: 68	n:2100000
Cons ci ratio: 7.916351e-03	ci left: 1.041403e-01	ci right 1.049684e-01	k: 219563	n:2100000
KS ci ratio: 6.625953e-01	ci left: 1.121240e-05	ci right 2.262449e-05	k: 34	n:2100000
NRAS   2100000 perm   1941 sec   (1082 perm/sec)   p_kst 1.619048e-05   p_cons 1.045538e-01   p_joint 3.238095e-05

Joint ci ratio: 4.719047e-01	ci left: 2.502599e-05	ci right 4.085584e-05	k: 68	n:2110000
Cons ci ratio: 7.897721e-03	ci left: 1.041377e-01	ci right 1.049639e-01	k: 220601	n:2110000
KS ci ratio: 6.625953e-01	ci left: 1.115926e-05	ci right 2.251727e-05	k: 34	n:2110000
NRAS   2110000 perm   1957 sec   (1078 perm/sec)   p_kst 1.611374e-05   p_cons 1.045502e-01   p_joint 3.222749e-05

Joint ci ratio: 4.719048e-01	ci left: 2.490794e-05	ci right 4.066313e-05	k: 68	n:2120000
Cons ci ratio: 7.879320e-03	ci left: 1.041328e-01	ci right 1.049570e-01	k: 221634	n:2120000
KS ci ratio: 6.625953e-01	ci left: 1.110662e-05	ci right 2.241106e-05	k: 34	n:2120000
NRAS   2120000 perm   1974 sec   (1074 perm/sec)   p_kst 1.603774e-05   p_cons 1.045443e-01   p_joint 3.207547e-05

Joint ci ratio: 4.685218e-01	ci left: 2.520484e-05	ci right 4.099697e-05	k: 69	n:2130000
Cons ci ratio: 7.859845e-03	ci left: 1.041565e-01	ci right 1.049788e-01	k: 222728	n:2130000
KS ci ratio: 6.625953e-01	ci left: 1.105448e-05	ci right 2.230584e-05	k: 34	n:2130000
NRAS   2130000 perm   1990 sec   (1070 perm/sec)   p_kst 1.596244e-05   p_cons 1.045671e-01   p_joint 3.239437e-05

Joint ci ratio: 5.238251e-01	ci left: 1.936152e-05	ci right 3.345317e-05	k: 55	n:2140000
Cons ci ratio: 7.842491e-03	ci left: 1.041329e-01	ci right 1.049532e-01	k: 223721	n:2140000
KS ci ratio: 6.533277e-01	ci left: 1.139198e-05	ci right 2.274597e-05	k: 35	n:2140000
NRAS   2140000 perm   2007 sec   (1066 perm/sec)   p_kst 1.635514e-05   p_cons 1.045425e-01   p_joint 2.570093e-05

Joint ci ratio: 5.238251e-01	ci left: 1.927146e-05	ci right 3.329757e-05	k: 55	n:2150000
Cons ci ratio: 7.823462e-03	ci left: 1.041522e-01	ci right 1.049707e-01	k: 224806	n:2150000
KS ci ratio: 6.533277e-01	ci left: 1.133899e-05	ci right 2.264017e-05	k: 35	n:2150000
NRAS   2150000 perm   2024 sec   (1063 perm/sec)   p_kst 1.627907e-05   p_cons 1.045609e-01   p_joint 2.558140e-05

Joint ci ratio: 5.238251e-01	ci left: 1.918224e-05	ci right 3.314342e-05	k: 55	n:2160000
Cons ci ratio: 7.806405e-03	ci left: 1.041275e-01	ci right 1.049440e-01	k: 225796	n:2160000
KS ci ratio: 6.533277e-01	ci left: 1.128650e-05	ci right 2.253536e-05	k: 35	n:2160000
NRAS   2160000 perm   2040 sec   (1059 perm/sec)   p_kst 1.620370e-05   p_cons 1.045352e-01   p_joint 2.546296e-05

Joint ci ratio: 5.192097e-01	ci left: 1.949397e-05	ci right 3.351169e-05	k: 56	n:2170000
Cons ci ratio: 7.787982e-03	ci left: 1.041384e-01	ci right 1.049530e-01	k: 226863	n:2170000
KS ci ratio: 6.444384e-01	ci left: 1.161936e-05	ci right 2.296729e-05	k: 36	n:2170000
NRAS   2170000 perm   2057 sec   (1055 perm/sec)   p_kst 1.658986e-05   p_cons 1.045452e-01   p_joint 2.580645e-05

Joint ci ratio: 5.192098e-01	ci left: 1.940455e-05	ci right 3.335797e-05	k: 56	n:2180000
Cons ci ratio: 7.770450e-03	ci left: 1.041309e-01	ci right 1.049436e-01	k: 227890	n:2180000
KS ci ratio: 6.444384e-01	ci left: 1.156606e-05	ci right 2.286193e-05	k: 36	n:2180000
NRAS   2180000 perm   2074 sec   (1051 perm/sec)   p_kst 1.651376e-05   p_cons 1.045367e-01   p_joint 2.568807e-05

Joint ci ratio: 5.192098e-01	ci left: 1.931595e-05	ci right 3.320565e-05	k: 56	n:2190000
Cons ci ratio: 7.753566e-03	ci left: 1.041106e-01	ci right 1.049215e-01	k: 228889	n:2190000
KS ci ratio: 6.444384e-01	ci left: 1.151325e-05	ci right 2.275754e-05	k: 36	n:2190000
NRAS   2190000 perm   2091 sec   (1047 perm/sec)   p_kst 1.643836e-05   p_cons 1.045155e-01   p_joint 2.557078e-05

Joint ci ratio: 5.192098e-01	ci left: 1.922815e-05	ci right 3.305472e-05	k: 56	n:2200000
Cons ci ratio: 7.735552e-03	ci left: 1.041206e-01	ci right 1.049296e-01	k: 229954	n:2200000
KS ci ratio: 6.444385e-01	ci left: 1.146092e-05	ci right 2.265410e-05	k: 36	n:2200000
NRAS   2200000 perm   2108 sec   (1044 perm/sec)   p_kst 1.636364e-05   p_cons 1.045245e-01   p_joint 2.545455e-05

Joint ci ratio: 5.192099e-01	ci left: 1.914114e-05	ci right 3.290515e-05	k: 56	n:2210000
Cons ci ratio: 7.718054e-03	ci left: 1.041209e-01	ci right 1.049281e-01	k: 230998	n:2210000
KS ci ratio: 6.444385e-01	ci left: 1.140906e-05	ci right 2.255159e-05	k: 36	n:2210000
NRAS   2210000 perm   2125 sec   (1040 perm/sec)   p_kst 1.628959e-05   p_cons 1.045240e-01   p_joint 2.533937e-05

Joint ci ratio: 5.147144e-01	ci left: 1.944656e-05	ci right 3.326569e-05	k: 57	n:2220000
Cons ci ratio: 7.700711e-03	ci left: 1.041204e-01	ci right 1.049257e-01	k: 232040	n:2220000
KS ci ratio: 6.444385e-01	ci left: 1.135766e-05	ci right 2.245001e-05	k: 36	n:2220000
NRAS   2220000 perm   2143 sec   (1036 perm/sec)   p_kst 1.621622e-05   p_cons 1.045225e-01   p_joint 2.567568e-05

Joint ci ratio: 5.147144e-01	ci left: 1.935936e-05	ci right 3.311652e-05	k: 57	n:2230000
Cons ci ratio: 7.683357e-03	ci left: 1.041230e-01	ci right 1.049265e-01	k: 233089	n:2230000
KS ci ratio: 6.444385e-01	ci left: 1.130673e-05	ci right 2.234934e-05	k: 36	n:2230000
NRAS   2230000 perm   2160 sec   (1032 perm/sec)   p_kst 1.614350e-05   p_cons 1.045242e-01   p_joint 2.556054e-05

Joint ci ratio: 5.103337e-01	ci left: 1.966159e-05	ci right 3.347240e-05	k: 58	n:2240000
Cons ci ratio: 7.665808e-03	ci left: 1.041331e-01	ci right 1.049349e-01	k: 234155	n:2240000
KS ci ratio: 6.359024e-01	ci left: 1.163012e-05	ci right 2.276762e-05	k: 37	n:2240000
NRAS   2240000 perm   2178 sec   (1029 perm/sec)   p_kst 1.651786e-05   p_cons 1.045335e-01   p_joint 2.589286e-05

Joint ci ratio: 5.060630e-01	ci left: 1.996163e-05	ci right 3.382463e-05	k: 59	n:2250000
Cons ci ratio: 7.648451e-03	ci left: 1.041414e-01	ci right 1.049414e-01	k: 235217	n:2250000
KS ci ratio: 6.276968e-01	ci left: 1.195161e-05	ci right 2.318125e-05	k: 38	n:2250000
NRAS   2250000 perm   2195 sec   (1025 perm/sec)   p_kst 1.688889e-05   p_cons 1.045409e-01   p_joint 2.622222e-05

Joint ci ratio: 5.060630e-01	ci left: 1.987330e-05	ci right 3.367496e-05	k: 59	n:2260000
Cons ci ratio: 7.632005e-03	ci left: 1.041302e-01	ci right 1.049284e-01	k: 236235	n:2260000
KS ci ratio: 6.276968e-01	ci left: 1.189873e-05	ci right 2.307868e-05	k: 38	n:2260000
NRAS   2260000 perm   2213 sec   (1021 perm/sec)   p_kst 1.681416e-05   p_cons 1.045288e-01   p_joint 2.610619e-05

Joint ci ratio: 5.018977e-01	ci left: 2.017024e-05	ci right 3.402273e-05	k: 60	n:2270000
Cons ci ratio: 7.614680e-03	ci left: 1.041432e-01	ci right 1.049397e-01	k: 237308	n:2270000
KS ci ratio: 6.198008e-01	ci left: 1.221713e-05	ci right 2.348639e-05	k: 39	n:2270000
NRAS   2270000 perm   2230 sec   (1018 perm/sec)   p_kst 1.718062e-05   p_cons 1.045410e-01   p_joint 2.643172e-05

Joint ci ratio: 5.018977e-01	ci left: 2.008178e-05	ci right 3.387351e-05	k: 60	n:2280000
Cons ci ratio: 7.597917e-03	ci left: 1.041452e-01	ci right 1.049400e-01	k: 238356	n:2280000
KS ci ratio: 6.198008e-01	ci left: 1.216354e-05	ci right 2.338338e-05	k: 39	n:2280000
NRAS   2280000 perm   2248 sec   (1014 perm/sec)   p_kst 1.710526e-05   p_cons 1.045421e-01   p_joint 2.631579e-05

Joint ci ratio: 4.978336e-01	ci left: 2.037568e-05	ci right 3.421692e-05	k: 61	n:2290000
Cons ci ratio: 7.581069e-03	ci left: 1.041520e-01	ci right 1.049450e-01	k: 239415	n:2290000
KS ci ratio: 6.198009e-01	ci left: 1.211043e-05	ci right 2.328127e-05	k: 39	n:2290000
NRAS   2290000 perm   2265 sec   (1011 perm/sec)   p_kst 1.703057e-05   p_cons 1.045480e-01   p_joint 2.663755e-05

Joint ci ratio: 4.978337e-01	ci left: 2.028709e-05	ci right 3.406815e-05	k: 61	n:2300000
Cons ci ratio: 7.565018e-03	ci left: 1.041418e-01	ci right 1.049331e-01	k: 240435	n:2300000
KS ci ratio: 6.198009e-01	ci left: 1.205777e-05	ci right 2.318005e-05	k: 39	n:2300000
NRAS   2300000 perm   2283 sec   (1007 perm/sec)   p_kst 1.695652e-05   p_cons 1.045370e-01   p_joint 2.652174e-05

Joint ci ratio: 4.978337e-01	ci left: 2.019926e-05	ci right 3.392067e-05	k: 61	n:2310000
Cons ci ratio: 7.548545e-03	ci left: 1.041447e-01	ci right 1.049342e-01	k: 241485	n:2310000
KS ci ratio: 6.121956e-01	ci left: 1.237084e-05	ci right 2.357943e-05	k: 40	n:2310000
NRAS   2310000 perm   2301 sec   (1004 perm/sec)   p_kst 1.731602e-05   p_cons 1.045390e-01   p_joint 2.640693e-05

Joint ci ratio: 4.978337e-01	ci left: 2.011220e-05	ci right 3.377446e-05	k: 61	n:2320000
Cons ci ratio: 7.532335e-03	ci left: 1.041436e-01	ci right 1.049315e-01	k: 242526	n:2320000
KS ci ratio: 6.121956e-01	ci left: 1.231752e-05	ci right 2.347779e-05	k: 40	n:2320000
NRAS   2320000 perm   2320 sec   (1000 perm/sec)   p_kst 1.724138e-05   p_cons 1.045371e-01   p_joint 2.629310e-05

Joint ci ratio: 4.978338e-01	ci left: 2.002588e-05	ci right 3.362951e-05	k: 61	n:2330000
Cons ci ratio: 7.515764e-03	ci left: 1.041542e-01	ci right 1.049404e-01	k: 243594	n:2330000
KS ci ratio: 6.121956e-01	ci left: 1.226466e-05	ci right 2.337703e-05	k: 40	n:2330000
NRAS   2330000 perm   2338 sec   (997 perm/sec)   p_kst 1.716738e-05   p_cons 1.045468e-01   p_joint 2.618026e-05

Joint ci ratio: 4.978338e-01	ci left: 1.994030e-05	ci right 3.348580e-05	k: 61	n:2340000
Cons ci ratio: 7.498361e-03	ci left: 1.041881e-01	ci right 1.049727e-01	k: 244717	n:2340000
KS ci ratio: 6.121957e-01	ci left: 1.221224e-05	ci right 2.327713e-05	k: 40	n:2340000
NRAS   2340000 perm   2356 sec   (993 perm/sec)   p_kst 1.709402e-05   p_cons 1.045799e-01   p_joint 2.606838e-05

Joint ci ratio: 4.978338e-01	ci left: 1.985545e-05	ci right 3.334330e-05	k: 61	n:2350000
Cons ci ratio: 7.482625e-03	ci left: 1.041831e-01	ci right 1.049660e-01	k: 245749	n:2350000
KS ci ratio: 6.121957e-01	ci left: 1.216028e-05	ci right 2.317808e-05	k: 40	n:2350000
NRAS   2350000 perm   2374 sec   (990 perm/sec)   p_kst 1.702128e-05   p_cons 1.045740e-01   p_joint 2.595745e-05

Joint ci ratio: 4.978339e-01	ci left: 1.977131e-05	ci right 3.320202e-05	k: 61	n:2360000
Cons ci ratio: 7.467393e-03	ci left: 1.041679e-01	ci right 1.049491e-01	k: 246757	n:2360000
KS ci ratio: 6.121957e-01	ci left: 1.210875e-05	ci right 2.307986e-05	k: 40	n:2360000
NRAS   2360000 perm   2392 sec   (986 perm/sec)   p_kst 1.694915e-05   p_cons 1.045581e-01   p_joint 2.584746e-05

Joint ci ratio: 5.018980e-01	ci left: 1.931918e-05	ci right 3.258718e-05	k: 60	n:2370000
Cons ci ratio: 7.451598e-03	ci left: 1.041694e-01	ci right 1.049489e-01	k: 247804	n:2370000
KS ci ratio: 6.121957e-01	ci left: 1.205766e-05	ci right 2.298248e-05	k: 40	n:2370000
NRAS   2370000 perm   2411 sec   (983 perm/sec)   p_kst 1.687764e-05   p_cons 1.045586e-01   p_joint 2.531646e-05

Joint ci ratio: 5.018980e-01	ci left: 1.923800e-05	ci right 3.245026e-05	k: 60	n:2380000
Cons ci ratio: 7.435487e-03	ci left: 1.041813e-01	ci right 1.049592e-01	k: 248876	n:2380000
KS ci ratio: 6.121957e-01	ci left: 1.200700e-05	ci right 2.288592e-05	k: 40	n:2380000
NRAS   2380000 perm   2429 sec   (980 perm/sec)   p_kst 1.680672e-05   p_cons 1.045697e-01   p_joint 2.521008e-05

Joint ci ratio: 5.018981e-01	ci left: 1.915751e-05	ci right 3.231448e-05	k: 60	n:2390000
Cons ci ratio: 7.420391e-03	ci left: 1.041701e-01	ci right 1.049464e-01	k: 249893	n:2390000
KS ci ratio: 6.121958e-01	ci left: 1.195676e-05	ci right 2.279016e-05	k: 40	n:2390000
NRAS   2390000 perm   2448 sec   (976 perm/sec)   p_kst 1.673640e-05   p_cons 1.045577e-01   p_joint 2.510460e-05

Joint ci ratio: 5.018981e-01	ci left: 1.907769e-05	ci right 3.217984e-05	k: 60	n:2400000
Cons ci ratio: 7.405386e-03	ci left: 1.041590e-01	ci right 1.049336e-01	k: 250910	n:2400000
KS ci ratio: 6.121958e-01	ci left: 1.190694e-05	ci right 2.269520e-05	k: 40	n:2400000
NRAS   2400000 perm   2467 sec   (973 perm/sec)   p_kst 1.666667e-05   p_cons 1.045458e-01   p_joint 2.500000e-05

Joint ci ratio: 5.018981e-01	ci left: 1.899853e-05	ci right 3.204631e-05	k: 60	n:2410000
Cons ci ratio: 7.390489e-03	ci left: 1.041476e-01	ci right 1.049206e-01	k: 251926	n:2410000
KS ci ratio: 6.048637e-01	ci left: 1.220845e-05	ci right 2.307924e-05	k: 41	n:2410000
NRAS   2410000 perm   2485 sec   (970 perm/sec)   p_kst 1.701245e-05   p_cons 1.045336e-01   p_joint 2.489627e-05

Joint ci ratio: 5.018981e-01	ci left: 1.892002e-05	ci right 3.191389e-05	k: 60	n:2420000
Cons ci ratio: 7.374493e-03	ci left: 1.041664e-01	ci right 1.049378e-01	k: 253015	n:2420000
KS ci ratio: 6.048638e-01	ci left: 1.215801e-05	ci right 2.298387e-05	k: 41	n:2420000
NRAS   2420000 perm   2504 sec   (967 perm/sec)   p_kst 1.694215e-05   p_cons 1.045517e-01   p_joint 2.479339e-05

Joint ci ratio: 5.018982e-01	ci left: 1.884216e-05	ci right 3.178256e-05	k: 60	n:2430000
Cons ci ratio: 7.359797e-03	ci left: 1.041547e-01	ci right 1.049245e-01	k: 254030	n:2430000
KS ci ratio: 6.048638e-01	ci left: 1.210797e-05	ci right 2.288928e-05	k: 41	n:2430000
NRAS   2430000 perm   2523 sec   (963 perm/sec)   p_kst 1.687243e-05   p_cons 1.045391e-01   p_joint 2.469136e-05

Joint ci ratio: 5.018982e-01	ci left: 1.876494e-05	ci right 3.165230e-05	k: 60	n:2440000
Cons ci ratio: 7.344321e-03	ci left: 1.041651e-01	ci right 1.049334e-01	k: 255099	n:2440000
KS ci ratio: 6.048638e-01	ci left: 1.205835e-05	ci right 2.279548e-05	k: 41	n:2440000
NRAS   2440000 perm   2541 sec   (960 perm/sec)   p_kst 1.680328e-05   p_cons 1.045488e-01   p_joint 2.459016e-05

Joint ci ratio: 5.018982e-01	ci left: 1.868834e-05	ci right 3.152311e-05	k: 60	n:2450000
Cons ci ratio: 7.329692e-03	ci left: 1.041563e-01	ci right 1.049230e-01	k: 256121	n:2450000
KS ci ratio: 6.048638e-01	ci left: 1.200913e-05	ci right 2.270243e-05	k: 41	n:2450000
NRAS   2450000 perm   2560 sec   (957 perm/sec)   p_kst 1.673469e-05   p_cons 1.045392e-01   p_joint 2.448980e-05

Joint ci ratio: 4.978341e-01	ci left: 1.896760e-05	ci right 3.185235e-05	k: 61	n:2460000
Cons ci ratio: 7.314198e-03	ci left: 1.041720e-01	ci right 1.049371e-01	k: 257203	n:2460000
KS ci ratio: 6.048638e-01	ci left: 1.196031e-05	ci right 2.261015e-05	k: 41	n:2460000
NRAS   2460000 perm   2579 sec   (954 perm/sec)   p_kst 1.666667e-05   p_cons 1.045541e-01   p_joint 2.479675e-05

Joint ci ratio: 4.978341e-01	ci left: 1.889081e-05	ci right 3.172339e-05	k: 61	n:2470000
Cons ci ratio: 7.299370e-03	ci left: 1.041729e-01	ci right 1.049365e-01	k: 258249	n:2470000
KS ci ratio: 6.048639e-01	ci left: 1.191189e-05	ci right 2.251861e-05	k: 41	n:2470000
NRAS   2470000 perm   2599 sec   (951 perm/sec)   p_kst 1.659919e-05   p_cons 1.045543e-01   p_joint 2.469636e-05

Joint ci ratio: 4.938672e-01	ci left: 1.916741e-05	ci right 3.204876e-05	k: 62	n:2480000
Cons ci ratio: 7.283800e-03	ci left: 1.041952e-01	ci right 1.049573e-01	k: 259348	n:2480000
KS ci ratio: 6.048639e-01	ci left: 1.186386e-05	ci right 2.242781e-05	k: 41	n:2480000
NRAS   2480000 perm   2618 sec   (947 perm/sec)   p_kst 1.653226e-05   p_cons 1.045758e-01   p_joint 2.500000e-05

Joint ci ratio: 4.938672e-01	ci left: 1.909043e-05	ci right 3.192005e-05	k: 62	n:2490000
Cons ci ratio: 7.268891e-03	ci left: 1.042029e-01	ci right 1.049635e-01	k: 260411	n:2490000
KS ci ratio: 6.048639e-01	ci left: 1.181621e-05	ci right 2.233774e-05	k: 41	n:2490000
NRAS   2490000 perm   2637 sec   (944 perm/sec)   p_kst 1.646586e-05   p_cons 1.045827e-01   p_joint 2.489960e-05

Joint ci ratio: 4.938673e-01	ci left: 1.901407e-05	ci right 3.179237e-05	k: 62	n:2500000
Cons ci ratio: 7.254491e-03	ci left: 1.041997e-01	ci right 1.049588e-01	k: 261447	n:2500000
KS ci ratio: 6.048639e-01	ci left: 1.176895e-05	ci right 2.224839e-05	k: 41	n:2500000
NRAS   2500000 perm   2656 sec   (941 perm/sec)   p_kst 1.640000e-05   p_cons 1.045788e-01   p_joint 2.480000e-05

Joint ci ratio: 4.938673e-01	ci left: 1.893832e-05	ci right 3.166571e-05	k: 62	n:2510000
Cons ci ratio: 7.239606e-03	ci left: 1.042113e-01	ci right 1.049689e-01	k: 262520	n:2510000
KS ci ratio: 6.048640e-01	ci left: 1.172206e-05	ci right 2.215975e-05	k: 41	n:2510000
NRAS   2510000 perm   2675 sec   (938 perm/sec)   p_kst 1.633466e-05   p_cons 1.045896e-01   p_joint 2.470120e-05

Joint ci ratio: 4.938673e-01	ci left: 1.886316e-05	ci right 3.154005e-05	k: 62	n:2520000
Cons ci ratio: 7.225593e-03	ci left: 1.042026e-01	ci right 1.049586e-01	k: 263542	n:2520000
KS ci ratio: 6.048640e-01	ci left: 1.167554e-05	ci right 2.207181e-05	k: 41	n:2520000
NRAS   2520000 perm   2694 sec   (935 perm/sec)   p_kst 1.626984e-05   p_cons 1.045802e-01   p_joint 2.460317e-05

Joint ci ratio: 4.938673e-01	ci left: 1.878861e-05	ci right 3.141539e-05	k: 62	n:2530000
Cons ci ratio: 7.210703e-03	ci left: 1.042188e-01	ci right 1.049734e-01	k: 264627	n:2530000
KS ci ratio: 6.048640e-01	ci left: 1.162940e-05	ci right 2.198457e-05	k: 41	n:2530000
NRAS   2530000 perm   2714 sec   (932 perm/sec)   p_kst 1.620553e-05   p_cons 1.045957e-01   p_joint 2.450593e-05

Joint ci ratio: 4.938674e-01	ci left: 1.871463e-05	ci right 3.129170e-05	k: 62	n:2540000
Cons ci ratio: 7.197190e-03	ci left: 1.042015e-01	ci right 1.049545e-01	k: 265627	n:2540000
KS ci ratio: 6.048640e-01	ci left: 1.158361e-05	ci right 2.189802e-05	k: 41	n:2540000
NRAS   2540000 perm   2733 sec   (929 perm/sec)   p_kst 1.614173e-05   p_cons 1.045776e-01   p_joint 2.440945e-05

Joint ci ratio: 4.938674e-01	ci left: 1.864124e-05	ci right 3.116899e-05	k: 62	n:2550000
Cons ci ratio: 7.183121e-03	ci left: 1.042007e-01	ci right 1.049523e-01	k: 266669	n:2550000
KS ci ratio: 6.048640e-01	ci left: 1.153818e-05	ci right 2.181215e-05	k: 41	n:2550000
NRAS   2550000 perm   2753 sec   (926 perm/sec)   p_kst 1.607843e-05   p_cons 1.045761e-01   p_joint 2.431373e-05

Joint ci ratio: 4.899938e-01	ci left: 1.891057e-05	ci right 3.148597e-05	k: 63	n:2560000
Cons ci ratio: 7.168865e-03	ci left: 1.042070e-01	ci right 1.049571e-01	k: 267729	n:2560000
KS ci ratio: 6.048641e-01	ci left: 1.149311e-05	ci right 2.172694e-05	k: 41	n:2560000
NRAS   2560000 perm   2773 sec   (923 perm/sec)   p_kst 1.601563e-05   p_cons 1.045816e-01   p_joint 2.460938e-05

Joint ci ratio: 4.899938e-01	ci left: 1.883699e-05	ci right 3.136346e-05	k: 63	n:2570000
Cons ci ratio: 7.154500e-03	ci left: 1.042183e-01	ci right 1.049670e-01	k: 268802	n:2570000
KS ci ratio: 6.048641e-01	ci left: 1.144839e-05	ci right 2.164240e-05	k: 41	n:2570000
NRAS   2570000 perm   2793 sec   (920 perm/sec)   p_kst 1.595331e-05   p_cons 1.045922e-01   p_joint 2.451362e-05

Joint ci ratio: 4.825124e-01	ci left: 1.944409e-05	ci right 3.211145e-05	k: 65	n:2580000
Cons ci ratio: 7.141329e-03	ci left: 1.042005e-01	ci right 1.049477e-01	k: 269800	n:2580000
KS ci ratio: 5.977893e-01	ci left: 1.173255e-05	ci right 2.200451e-05	k: 42	n:2580000
NRAS   2580000 perm   2812 sec   (917 perm/sec)   p_kst 1.627907e-05   p_cons 1.045736e-01   p_joint 2.519380e-05

Joint ci ratio: 4.825124e-01	ci left: 1.936902e-05	ci right 3.198747e-05	k: 65	n:2590000
Cons ci ratio: 7.128070e-03	ci left: 1.041871e-01	ci right 1.049327e-01	k: 270809	n:2590000
KS ci ratio: 5.977893e-01	ci left: 1.168725e-05	ci right 2.191955e-05	k: 42	n:2590000
NRAS   2590000 perm   2832 sec   (914 perm/sec)   p_kst 1.621622e-05   p_cons 1.045595e-01   p_joint 2.509653e-05

Joint ci ratio: 4.825124e-01	ci left: 1.929452e-05	ci right 3.186444e-05	k: 65	n:2600000
Cons ci ratio: 7.114591e-03	ci left: 1.041814e-01	ci right 1.049256e-01	k: 271838	n:2600000
KS ci ratio: 5.977893e-01	ci left: 1.164230e-05	ci right 2.183525e-05	k: 42	n:2600000
NRAS   2600000 perm   2852 sec   (912 perm/sec)   p_kst 1.615385e-05   p_cons 1.045531e-01   p_joint 2.500000e-05

Joint ci ratio: 4.825125e-01	ci left: 1.922060e-05	ci right 3.174236e-05	k: 65	n:2610000
Cons ci ratio: 7.101378e-03	ci left: 1.041708e-01	ci right 1.049136e-01	k: 272854	n:2610000
KS ci ratio: 5.977894e-01	ci left: 1.159769e-05	ci right 2.175159e-05	k: 42	n:2610000
NRAS   2610000 perm   2872 sec   (909 perm/sec)   p_kst 1.609195e-05   p_cons 1.045418e-01   p_joint 2.490421e-05

Joint ci ratio: 4.825125e-01	ci left: 1.914724e-05	ci right 3.162120e-05	k: 65	n:2620000
Cons ci ratio: 7.088339e-03	ci left: 1.041577e-01	ci right 1.048989e-01	k: 273863	n:2620000
KS ci ratio: 5.977894e-01	ci left: 1.155342e-05	ci right 2.166856e-05	k: 42	n:2620000
NRAS   2620000 perm   2892 sec   (906 perm/sec)   p_kst 1.603053e-05   p_cons 1.045279e-01   p_joint 2.480916e-05

Joint ci ratio: 4.825125e-01	ci left: 1.907443e-05	ci right 3.150097e-05	k: 65	n:2630000
Cons ci ratio: 7.075314e-03	ci left: 1.041461e-01	ci right 1.048859e-01	k: 274876	n:2630000
KS ci ratio: 5.977894e-01	ci left: 1.150949e-05	ci right 2.158617e-05	k: 42	n:2630000
NRAS   2630000 perm   2913 sec   (903 perm/sec)   p_kst 1.596958e-05   p_cons 1.045156e-01   p_joint 2.471483e-05

Joint ci ratio: 4.788981e-01	ci left: 1.933505e-05	ci right 3.180602e-05	k: 66	n:2640000
Cons ci ratio: 7.061389e-03	ci left: 1.041604e-01	ci right 1.048988e-01	k: 275957	n:2640000
KS ci ratio: 5.977894e-01	ci left: 1.146590e-05	ci right 2.150441e-05	k: 42	n:2640000
NRAS   2640000 perm   2933 sec   (900 perm/sec)   p_kst 1.590909e-05   p_cons 1.045292e-01   p_joint 2.500000e-05

Joint ci ratio: 4.825125e-01	ci left: 1.893047e-05	ci right 3.126323e-05	k: 65	n:2650000
Cons ci ratio: 7.047461e-03	ci left: 1.041768e-01	ci right 1.049139e-01	k: 277044	n:2650000
KS ci ratio: 5.977894e-01	ci left: 1.142263e-05	ci right 2.142326e-05	k: 42	n:2650000
NRAS   2650000 perm   2953 sec   (897 perm/sec)   p_kst 1.584906e-05   p_cons 1.045449e-01   p_joint 2.452830e-05

Joint ci ratio: 4.825126e-01	ci left: 1.885931e-05	ci right 3.114570e-05	k: 65	n:2660000
Cons ci ratio: 7.034546e-03	ci left: 1.041683e-01	ci right 1.049040e-01	k: 278065	n:2660000
KS ci ratio: 5.977895e-01	ci left: 1.137969e-05	ci right 2.134272e-05	k: 42	n:2660000
NRAS   2660000 perm   2973 sec   (895 perm/sec)   p_kst 1.578947e-05   p_cons 1.045357e-01   p_joint 2.443609e-05

Joint ci ratio: 4.753637e-01	ci left: 1.944727e-05	ci right 3.186792e-05	k: 67	n:2670000
Cons ci ratio: 7.021801e-03	ci left: 1.041572e-01	ci right 1.048916e-01	k: 279079	n:2670000
KS ci ratio: 5.909573e-01	ci left: 1.165520e-05	ci right 2.169309e-05	k: 43	n:2670000
NRAS   2670000 perm   2994 sec   (892 perm/sec)   p_kst 1.610487e-05   p_cons 1.045240e-01   p_joint 2.509363e-05

Joint ci ratio: 4.753637e-01	ci left: 1.937471e-05	ci right 3.174901e-05	k: 67	n:2680000
Cons ci ratio: 7.008608e-03	ci left: 1.041601e-01	ci right 1.048930e-01	k: 280130	n:2680000
KS ci ratio: 5.909573e-01	ci left: 1.161171e-05	ci right 2.161215e-05	k: 43	n:2680000
NRAS   2680000 perm   3014 sec   (889 perm/sec)   p_kst 1.604478e-05   p_cons 1.045261e-01   p_joint 2.500000e-05

Joint ci ratio: 4.753637e-01	ci left: 1.930268e-05	ci right 3.163098e-05	k: 67	n:2690000
Cons ci ratio: 6.995462e-03	ci left: 1.041636e-01	ci right 1.048952e-01	k: 281183	n:2690000
KS ci ratio: 5.909573e-01	ci left: 1.156854e-05	ci right 2.153181e-05	k: 43	n:2690000
NRAS   2690000 perm   3035 sec   (886 perm/sec)   p_kst 1.598513e-05   p_cons 1.045290e-01   p_joint 2.490706e-05

Joint ci ratio: 5.103349e-01	ci left: 1.631183e-05	ci right 2.776971e-05	k: 58	n:2700000
Cons ci ratio: 6.982499e-03	ci left: 1.041642e-01	ci right 1.048944e-01	k: 282228	n:2700000
KS ci ratio: 5.843541e-01	ci left: 1.184094e-05	ci right 2.187696e-05	k: 44	n:2700000
NRAS   2700000 perm   3055 sec   (884 perm/sec)   p_kst 1.629630e-05   p_cons 1.045289e-01   p_joint 2.148148e-05

Joint ci ratio: 5.060641e-01	ci left: 1.657330e-05	ci right 2.808320e-05	k: 59	n:2710000
Cons ci ratio: 6.969869e-03	ci left: 1.041578e-01	ci right 1.048866e-01	k: 283254	n:2710000
KS ci ratio: 5.843541e-01	ci left: 1.179724e-05	ci right 2.179623e-05	k: 44	n:2710000
NRAS   2710000 perm   3076 sec   (881 perm/sec)   p_kst 1.623616e-05   p_cons 1.045218e-01   p_joint 2.177122e-05

Joint ci ratio: 5.018988e-01	ci left: 1.683325e-05	ci right 2.839399e-05	k: 60	n:2720000
Cons ci ratio: 6.957048e-03	ci left: 1.041584e-01	ci right 1.048859e-01	k: 284299	n:2720000
KS ci ratio: 5.843542e-01	ci left: 1.175387e-05	ci right 2.171610e-05	k: 44	n:2720000
NRAS   2720000 perm   3097 sec   (878 perm/sec)   p_kst 1.617647e-05   p_cons 1.045217e-01   p_joint 2.205882e-05

Joint ci ratio: 5.103349e-01	ci left: 1.613258e-05	ci right 2.746455e-05	k: 58	n:2730000
Cons ci ratio: 6.944678e-03	ci left: 1.041487e-01	ci right 1.048749e-01	k: 285316	n:2730000
KS ci ratio: 5.843542e-01	ci left: 1.171082e-05	ci right 2.163655e-05	k: 44	n:2730000
NRAS   2730000 perm   3117 sec   (876 perm/sec)   p_kst 1.611722e-05   p_cons 1.045114e-01   p_joint 2.124542e-05

Joint ci ratio: 5.060642e-01	ci left: 1.639184e-05	ci right 2.777572e-05	k: 59	n:2740000
Cons ci ratio: 6.931860e-03	ci left: 1.041530e-01	ci right 1.048778e-01	k: 286371	n:2740000
KS ci ratio: 5.843542e-01	ci left: 1.166808e-05	ci right 2.155759e-05	k: 44	n:2740000
NRAS   2740000 perm   3138 sec   (873 perm/sec)   p_kst 1.605839e-05   p_cons 1.045150e-01   p_joint 2.153285e-05

Joint ci ratio: 5.060642e-01	ci left: 1.633223e-05	ci right 2.767471e-05	k: 59	n:2750000
Cons ci ratio: 6.918925e-03	ci left: 1.041623e-01	ci right 1.048858e-01	k: 287440	n:2750000
KS ci ratio: 5.843542e-01	ci left: 1.162565e-05	ci right 2.147919e-05	k: 44	n:2750000
NRAS   2750000 perm   3159 sec   (870 perm/sec)   p_kst 1.600000e-05   p_cons 1.045236e-01   p_joint 2.145455e-05

Joint ci ratio: 5.060642e-01	ci left: 1.627306e-05	ci right 2.757444e-05	k: 59	n:2760000
Cons ci ratio: 6.906302e-03	ci left: 1.041650e-01	ci right 1.048873e-01	k: 288491	n:2760000
KS ci ratio: 5.843542e-01	ci left: 1.158353e-05	ci right 2.140137e-05	k: 44	n:2760000
NRAS   2760000 perm   3180 sec   (868 perm/sec)   p_kst 1.594203e-05   p_cons 1.045257e-01   p_joint 2.137681e-05

Joint ci ratio: 5.060643e-01	ci left: 1.621431e-05	ci right 2.747490e-05	k: 59	n:2770000
Cons ci ratio: 6.892938e-03	ci left: 1.041897e-01	ci right 1.049107e-01	k: 289603	n:2770000
KS ci ratio: 5.843542e-01	ci left: 1.154171e-05	ci right 2.132411e-05	k: 44	n:2770000
NRAS   2770000 perm   3202 sec   (865 perm/sec)   p_kst 1.588448e-05   p_cons 1.045498e-01   p_joint 2.129964e-05

Joint ci ratio: 5.060643e-01	ci left: 1.615599e-05	ci right 2.737607e-05	k: 59	n:2780000
Cons ci ratio: 6.880708e-03	ci left: 1.041855e-01	ci right 1.049052e-01	k: 290635	n:2780000
KS ci ratio: 5.843543e-01	ci left: 1.150019e-05	ci right 2.124741e-05	k: 44	n:2780000
NRAS   2780000 perm   3223 sec   (863 perm/sec)   p_kst 1.582734e-05   p_cons 1.045450e-01   p_joint 2.122302e-05

Joint ci ratio: 5.018990e-01	ci left: 1.641091e-05	ci right 2.768160e-05	k: 60	n:2790000
Cons ci ratio: 6.868661e-03	ci left: 1.041781e-01	ci right 1.048965e-01	k: 291658	n:2790000
KS ci ratio: 5.779676e-01	ci left: 1.176465e-05	ci right 2.158186e-05	k: 45	n:2790000
NRAS   2790000 perm   3244 sec   (860 perm/sec)   p_kst 1.612903e-05   p_cons 1.045369e-01   p_joint 2.150538e-05

Joint ci ratio: 5.018990e-01	ci left: 1.635230e-05	ci right 2.758273e-05	k: 60	n:2800000
Cons ci ratio: 6.856062e-03	ci left: 1.041876e-01	ci right 1.049047e-01	k: 292728	n:2800000
KS ci ratio: 5.779676e-01	ci left: 1.172263e-05	ci right 2.150478e-05	k: 45	n:2800000
NRAS   2800000 perm   3265 sec   (858 perm/sec)   p_kst 1.607143e-05   p_cons 1.045457e-01   p_joint 2.142857e-05

Joint ci ratio: 5.018990e-01	ci left: 1.629410e-05	ci right 2.748458e-05	k: 60	n:2810000
Cons ci ratio: 6.844053e-03	ci left: 1.041827e-01	ci right 1.048985e-01	k: 293758	n:2810000
KS ci ratio: 5.779676e-01	ci left: 1.168092e-05	ci right 2.142825e-05	k: 45	n:2810000
NRAS   2810000 perm   3286 sec   (855 perm/sec)   p_kst 1.601423e-05   p_cons 1.045402e-01   p_joint 2.135231e-05

Joint ci ratio: 5.018991e-01	ci left: 1.623632e-05	ci right 2.738711e-05	k: 60	n:2820000
Cons ci ratio: 6.831149e-03	ci left: 1.042041e-01	ci right 1.049187e-01	k: 294862	n:2820000
KS ci ratio: 5.779677e-01	ci left: 1.163949e-05	ci right 2.135226e-05	k: 45	n:2820000
NRAS   2820000 perm   3307 sec   (853 perm/sec)   p_kst 1.595745e-05   p_cons 1.045610e-01   p_joint 2.127660e-05

Joint ci ratio: 5.489047e-01	ci left: 1.311344e-05	ci right 2.329278e-05	k: 50	n:2830000
Cons ci ratio: 6.818563e-03	ci left: 1.042186e-01	ci right 1.049320e-01	k: 295947	n:2830000
KS ci ratio: 5.779677e-01	ci left: 1.159837e-05	ci right 2.127681e-05	k: 45	n:2830000
NRAS   2830000 perm   3329 sec   (850 perm/sec)   p_kst 1.590106e-05   p_cons 1.045749e-01   p_joint 1.766784e-05

Joint ci ratio: 5.717859e-01	ci left: 1.185840e-05	ci right 2.160471e-05	k: 46	n:2840000
Cons ci ratio: 6.806698e-03	ci left: 1.042151e-01	ci right 1.049272e-01	k: 296981	n:2840000
KS ci ratio: 5.717859e-01	ci left: 1.185840e-05	ci right 2.160471e-05	k: 46	n:2840000
NRAS   2840000 perm   3351 sec   (848 perm/sec)   p_kst 1.619718e-05   p_cons 1.045708e-01   p_joint 1.619718e-05

Joint ci ratio: 5.717860e-01	ci left: 1.181679e-05	ci right 2.152891e-05	k: 46	n:2850000
Cons ci ratio: 6.794602e-03	ci left: 1.042197e-01	ci right 1.049306e-01	k: 298038	n:2850000
KS ci ratio: 5.717860e-01	ci left: 1.181679e-05	ci right 2.152891e-05	k: 46	n:2850000
NRAS   2850000 perm   3372 sec   (845 perm/sec)   p_kst 1.614035e-05   p_cons 1.045747e-01   p_joint 1.614035e-05

Joint ci ratio: 5.717860e-01	ci left: 1.177547e-05	ci right 2.145363e-05	k: 46	n:2860000
Cons ci ratio: 6.783027e-03	ci left: 1.042117e-01	ci right 1.049213e-01	k: 299059	n:2860000
KS ci ratio: 5.717860e-01	ci left: 1.177547e-05	ci right 2.145363e-05	k: 46	n:2860000
NRAS   2860000 perm   3394 sec   (843 perm/sec)   p_kst 1.608392e-05   p_cons 1.045661e-01   p_joint 1.608392e-05

Joint ci ratio: 5.717860e-01	ci left: 1.173444e-05	ci right 2.137888e-05	k: 46	n:2870000
Cons ci ratio: 6.770590e-03	ci left: 1.042291e-01	ci right 1.049375e-01	k: 300153	n:2870000
KS ci ratio: 5.717860e-01	ci left: 1.173444e-05	ci right 2.137888e-05	k: 46	n:2870000
NRAS   2870000 perm   3416 sec   (840 perm/sec)   p_kst 1.602787e-05   p_cons 1.045829e-01   p_joint 1.602787e-05

Joint ci ratio: 5.657985e-01	ci left: 1.199094e-05	ci right 2.170134e-05	k: 47	n:2880000
Cons ci ratio: 6.758047e-03	ci left: 1.042513e-01	ci right 1.049585e-01	k: 301261	n:2880000
KS ci ratio: 5.717860e-01	ci left: 1.169370e-05	ci right 2.130465e-05	k: 46	n:2880000
NRAS   2880000 perm   3438 sec   (838 perm/sec)   p_kst 1.597222e-05   p_cons 1.046045e-01   p_joint 1.631944e-05

Joint ci ratio: 5.657985e-01	ci left: 1.194945e-05	ci right 2.162625e-05	k: 47	n:2890000
Cons ci ratio: 6.746918e-03	ci left: 1.042360e-01	ci right 1.049420e-01	k: 302261	n:2890000
KS ci ratio: 5.717860e-01	ci left: 1.165323e-05	ci right 2.123093e-05	k: 46	n:2890000
NRAS   2890000 perm   3460 sec   (835 perm/sec)   p_kst 1.591696e-05   p_cons 1.045886e-01   p_joint 1.626298e-05

Joint ci ratio: 5.657985e-01	ci left: 1.190824e-05	ci right 2.155168e-05	k: 47	n:2900000
Cons ci ratio: 6.735250e-03	ci left: 1.042373e-01	ci right 1.049421e-01	k: 303309	n:2900000
KS ci ratio: 5.717860e-01	ci left: 1.161305e-05	ci right 2.115772e-05	k: 46	n:2900000
NRAS   2900000 perm   3482 sec   (833 perm/sec)   p_kst 1.586207e-05   p_cons 1.045893e-01   p_joint 1.620690e-05

Joint ci ratio: 5.657985e-01	ci left: 1.186732e-05	ci right 2.147762e-05	k: 47	n:2910000
Cons ci ratio: 6.723542e-03	ci left: 1.042414e-01	ci right 1.049450e-01	k: 304365	n:2910000
KS ci ratio: 5.717861e-01	ci left: 1.157314e-05	ci right 2.108501e-05	k: 46	n:2910000
NRAS   2910000 perm   3504 sec   (831 perm/sec)   p_kst 1.580756e-05   p_cons 1.045928e-01   p_joint 1.615120e-05

Joint ci ratio: 5.599952e-01	ci left: 1.212037e-05	ci right 2.179482e-05	k: 48	n:2920000
Cons ci ratio: 6.712399e-03	ci left: 1.042314e-01	ci right 1.049337e-01	k: 305380	n:2920000
KS ci ratio: 5.657985e-01	ci left: 1.182668e-05	ci right 2.140407e-05	k: 47	n:2920000
NRAS   2920000 perm   3526 sec   (828 perm/sec)   p_kst 1.609589e-05   p_cons 1.045822e-01   p_joint 1.643836e-05

Joint ci ratio: 5.599952e-01	ci left: 1.207900e-05	ci right 2.172043e-05	k: 48	n:2930000
Cons ci ratio: 6.700872e-03	ci left: 1.042338e-01	ci right 1.049349e-01	k: 306431	n:2930000
KS ci ratio: 5.657985e-01	ci left: 1.178631e-05	ci right 2.133101e-05	k: 47	n:2930000
NRAS   2930000 perm   3548 sec   (826 perm/sec)   p_kst 1.604096e-05   p_cons 1.045840e-01   p_joint 1.638225e-05

Joint ci ratio: 5.599952e-01	ci left: 1.203792e-05	ci right 2.164655e-05	k: 48	n:2940000
Cons ci ratio: 6.688942e-03	ci left: 1.042490e-01	ci right 1.049490e-01	k: 307520	n:2940000
KS ci ratio: 5.657985e-01	ci left: 1.174622e-05	ci right 2.125846e-05	k: 47	n:2940000
NRAS   2940000 perm   3570 sec   (823 perm/sec)   p_kst 1.598639e-05   p_cons 1.045986e-01   p_joint 1.632653e-05

Joint ci ratio: 5.599953e-01	ci left: 1.199711e-05	ci right 2.157318e-05	k: 48	n:2950000
Cons ci ratio: 6.678646e-03	ci left: 1.042202e-01	ci right 1.049189e-01	k: 308479	n:2950000
KS ci ratio: 5.657986e-01	ci left: 1.170641e-05	ci right 2.118640e-05	k: 47	n:2950000
NRAS   2950000 perm   3593 sec   (821 perm/sec)   p_kst 1.593220e-05   p_cons 1.045692e-01   p_joint 1.627119e-05

Joint ci ratio: 5.599953e-01	ci left: 1.195658e-05	ci right 2.150029e-05	k: 48	n:2960000
Cons ci ratio: 6.667328e-03	ci left: 1.042216e-01	ci right 1.049191e-01	k: 309527	n:2960000
KS ci ratio: 5.657986e-01	ci left: 1.166686e-05	ci right 2.111482e-05	k: 47	n:2960000
NRAS   2960000 perm   3615 sec   (819 perm/sec)   p_kst 1.587838e-05   p_cons 1.045699e-01   p_joint 1.621622e-05

Joint ci ratio: 5.599953e-01	ci left: 1.191632e-05	ci right 2.142790e-05	k: 48	n:2970000
Cons ci ratio: 6.655803e-03	ci left: 1.042303e-01	ci right 1.049267e-01	k: 310597	n:2970000
KS ci ratio: 5.657986e-01	ci left: 1.162758e-05	ci right 2.104373e-05	k: 47	n:2970000
NRAS   2970000 perm   3638 sec   (816 perm/sec)   p_kst 1.582492e-05   p_cons 1.045781e-01   p_joint 1.616162e-05

Joint ci ratio: 5.599953e-01	ci left: 1.187634e-05	ci right 2.135600e-05	k: 48	n:2980000
Cons ci ratio: 6.644743e-03	ci left: 1.042276e-01	ci right 1.049228e-01	k: 311633	n:2980000
KS ci ratio: 5.657986e-01	ci left: 1.158856e-05	ci right 2.097311e-05	k: 47	n:2980000
NRAS   2980000 perm   3660 sec   (814 perm/sec)   p_kst 1.577181e-05   p_cons 1.045748e-01   p_joint 1.610738e-05

Joint ci ratio: 5.599953e-01	ci left: 1.183662e-05	ci right 2.128457e-05	k: 48	n:2990000
Cons ci ratio: 6.634270e-03	ci left: 1.042099e-01	ci right 1.049039e-01	k: 312624	n:2990000
KS ci ratio: 5.657986e-01	ci left: 1.154980e-05	ci right 2.090297e-05	k: 47	n:2990000
NRAS   2990000 perm   3682 sec   (812 perm/sec)   p_kst 1.571906e-05   p_cons 1.045565e-01   p_joint 1.605351e-05

Joint ci ratio: 5.599953e-01	ci left: 1.179716e-05	ci right 2.121362e-05	k: 48	n:3000000
Cons ci ratio: 6.623258e-03	ci left: 1.042090e-01	ci right 1.049018e-01	k: 313665	n:3000000
KS ci ratio: 5.657986e-01	ci left: 1.151130e-05	ci right 2.083329e-05	k: 47	n:3000000
NRAS   3000000 perm   3705 sec   (810 perm/sec)   p_kst 1.566667e-05   p_cons 1.045550e-01   p_joint 1.600000e-05

Joint ci ratio: 5.599953e-01	ci left: 1.175797e-05	ci right 2.114315e-05	k: 48	n:3010000
Cons ci ratio: 6.612312e-03	ci left: 1.042077e-01	ci right 1.048994e-01	k: 314705	n:3010000
KS ci ratio: 5.657987e-01	ci left: 1.147306e-05	ci right 2.076408e-05	k: 47	n:3010000
NRAS   3010000 perm   3728 sec   (807 perm/sec)   p_kst 1.561462e-05   p_cons 1.045532e-01   p_joint 1.594684e-05

Joint ci ratio: 5.599954e-01	ci left: 1.171903e-05	ci right 2.107314e-05	k: 48	n:3020000
Cons ci ratio: 6.601548e-03	ci left: 1.042028e-01	ci right 1.048933e-01	k: 315734	n:3020000
KS ci ratio: 5.657987e-01	ci left: 1.143507e-05	ci right 2.069532e-05	k: 47	n:3020000
NRAS   3020000 perm   3751 sec   (805 perm/sec)   p_kst 1.556291e-05   p_cons 1.045477e-01   p_joint 1.589404e-05

Joint ci ratio: 5.599954e-01	ci left: 1.168036e-05	ci right 2.100359e-05	k: 48	n:3030000
Cons ci ratio: 6.590477e-03	ci left: 1.042082e-01	ci right 1.048975e-01	k: 316794	n:3030000
KS ci ratio: 5.657987e-01	ci left: 1.139733e-05	ci right 2.062702e-05	k: 47	n:3030000
NRAS   3030000 perm   3774 sec   (803 perm/sec)   p_kst 1.551155e-05   p_cons 1.045525e-01   p_joint 1.584158e-05

Joint ci ratio: 5.599954e-01	ci left: 1.164193e-05	ci right 2.093450e-05	k: 48	n:3040000
Cons ci ratio: 6.579681e-03	ci left: 1.042072e-01	ci right 1.048955e-01	k: 317835	n:3040000
KS ci ratio: 5.657987e-01	ci left: 1.135983e-05	ci right 2.055917e-05	k: 47	n:3040000
NRAS   3040000 perm   3797 sec   (801 perm/sec)   p_kst 1.546053e-05   p_cons 1.045510e-01   p_joint 1.578947e-05

Joint ci ratio: 5.543671e-01	ci left: 1.188542e-05	ci right 2.123949e-05	k: 49	n:3050000
Cons ci ratio: 6.569340e-03	ci left: 1.041949e-01	ci right 1.048819e-01	k: 318841	n:3050000
KS ci ratio: 5.599954e-01	ci left: 1.160376e-05	ci right 2.086586e-05	k: 48	n:3050000
NRAS   3050000 perm   3820 sec   (799 perm/sec)   p_kst 1.573770e-05   p_cons 1.045380e-01   p_joint 1.606557e-05

Joint ci ratio: 5.489051e-01	ci left: 1.212779e-05	ci right 2.154202e-05	k: 50	n:3060000
Cons ci ratio: 6.558693e-03	ci left: 1.041927e-01	ci right 1.048786e-01	k: 319878	n:3060000
KS ci ratio: 5.599954e-01	ci left: 1.156584e-05	ci right 2.079767e-05	k: 48	n:3060000
NRAS   3060000 perm   3843 sec   (796 perm/sec)   p_kst 1.568627e-05   p_cons 1.045353e-01   p_joint 1.633987e-05

Joint ci ratio: 5.489051e-01	ci left: 1.208829e-05	ci right 2.147186e-05	k: 50	n:3070000
Cons ci ratio: 6.547893e-03	ci left: 1.041964e-01	ci right 1.048812e-01	k: 320933	n:3070000
KS ci ratio: 5.599954e-01	ci left: 1.152817e-05	ci right 2.072993e-05	k: 48	n:3070000
NRAS   3070000 perm   3866 sec   (794 perm/sec)   p_kst 1.563518e-05   p_cons 1.045384e-01   p_joint 1.628664e-05

Joint ci ratio: 5.489052e-01	ci left: 1.204904e-05	ci right 2.140214e-05	k: 50	n:3080000
Cons ci ratio: 6.536839e-03	ci left: 1.042088e-01	ci right 1.048926e-01	k: 322015	n:3080000
KS ci ratio: 5.599955e-01	ci left: 1.149074e-05	ci right 2.066262e-05	k: 48	n:3080000
NRAS   3080000 perm   3889 sec   (792 perm/sec)   p_kst 1.558442e-05   p_cons 1.045503e-01   p_joint 1.623377e-05

Joint ci ratio: 5.436015e-01	ci left: 1.228897e-05	ci right 2.170078e-05	k: 51	n:3090000
Cons ci ratio: 6.526315e-03	ci left: 1.042076e-01	ci right 1.048902e-01	k: 323055	n:3090000
KS ci ratio: 5.543671e-01	ci left: 1.173157e-05	ci right 2.096454e-05	k: 49	n:3090000
NRAS   3090000 perm   3912 sec   (790 perm/sec)   p_kst 1.585761e-05   p_cons 1.045485e-01   p_joint 1.650485e-05

Joint ci ratio: 5.436015e-01	ci left: 1.224933e-05	ci right 2.163078e-05	k: 51	n:3100000
Cons ci ratio: 6.515752e-03	ci left: 1.042090e-01	ci right 1.048905e-01	k: 324103	n:3100000
KS ci ratio: 5.543672e-01	ci left: 1.169372e-05	ci right 2.089691e-05	k: 49	n:3100000
NRAS   3100000 perm   3935 sec   (788 perm/sec)   p_kst 1.580645e-05   p_cons 1.045494e-01   p_joint 1.645161e-05

Joint ci ratio: 5.436016e-01	ci left: 1.220994e-05	ci right 2.156122e-05	k: 51	n:3110000
Cons ci ratio: 6.505754e-03	ci left: 1.041955e-01	ci right 1.048759e-01	k: 325105	n:3110000
KS ci ratio: 5.543672e-01	ci left: 1.165612e-05	ci right 2.082972e-05	k: 49	n:3110000
NRAS   3110000 perm   3959 sec   (786 perm/sec)   p_kst 1.575563e-05   p_cons 1.045354e-01   p_joint 1.639871e-05

Joint ci ratio: 5.436016e-01	ci left: 1.217081e-05	ci right 2.149212e-05	k: 51	n:3120000
Cons ci ratio: 6.495357e-03	ci left: 1.041950e-01	ci right 1.048743e-01	k: 326147	n:3120000
KS ci ratio: 5.543672e-01	ci left: 1.161876e-05	ci right 2.076296e-05	k: 49	n:3120000
NRAS   3120000 perm   3982 sec   (784 perm/sec)   p_kst 1.570513e-05   p_cons 1.045343e-01   p_joint 1.634615e-05

Joint ci ratio: 5.384488e-01	ci left: 1.240772e-05	ci right 2.178623e-05	k: 52	n:3130000
Cons ci ratio: 6.485331e-03	ci left: 1.041852e-01	ci right 1.048634e-01	k: 327160	n:3130000
KS ci ratio: 5.543672e-01	ci left: 1.158164e-05	ci right 2.069662e-05	k: 49	n:3130000
NRAS   3130000 perm   4005 sec   (781 perm/sec)   p_kst 1.565495e-05   p_cons 1.045240e-01   p_joint 1.661342e-05

Joint ci ratio: 5.384488e-01	ci left: 1.236820e-05	ci right 2.171685e-05	k: 52	n:3140000
Cons ci ratio: 6.474690e-03	ci left: 1.041946e-01	ci right 1.048717e-01	k: 328233	n:3140000
KS ci ratio: 5.543672e-01	ci left: 1.154476e-05	ci right 2.063071e-05	k: 49	n:3140000
NRAS   3140000 perm   4029 sec   (779 perm/sec)   p_kst 1.560510e-05   p_cons 1.045328e-01   p_joint 1.656051e-05

Joint ci ratio: 5.334398e-01	ci left: 1.260340e-05	ci right 2.200798e-05	k: 53	n:3150000
Cons ci ratio: 6.464123e-03	ci left: 1.042033e-01	ci right 1.048794e-01	k: 329304	n:3150000
KS ci ratio: 5.489053e-01	ci left: 1.178128e-05	ci right 2.092654e-05	k: 50	n:3150000
NRAS   3150000 perm   4053 sec   (777 perm/sec)   p_kst 1.587302e-05   p_cons 1.045410e-01   p_joint 1.682540e-05

Joint ci ratio: 5.334398e-01	ci left: 1.256352e-05	ci right 2.193833e-05	k: 53	n:3160000
Cons ci ratio: 6.453804e-03	ci left: 1.042062e-01	ci right 1.048812e-01	k: 330357	n:3160000
KS ci ratio: 5.489053e-01	ci left: 1.174400e-05	ci right 2.086032e-05	k: 50	n:3160000
NRAS   3160000 perm   4076 sec   (775 perm/sec)   p_kst 1.582278e-05   p_cons 1.045434e-01   p_joint 1.677215e-05

Joint ci ratio: 5.334398e-01	ci left: 1.252388e-05	ci right 2.186913e-05	k: 53	n:3170000
Cons ci ratio: 6.443133e-03	ci left: 1.042208e-01	ci right 1.048948e-01	k: 331447	n:3170000
KS ci ratio: 5.489053e-01	ci left: 1.170695e-05	ci right 2.079451e-05	k: 50	n:3170000
NRAS   3170000 perm   4100 sec   (773 perm/sec)   p_kst 1.577287e-05   p_cons 1.045574e-01   p_joint 1.671924e-05

Joint ci ratio: 5.334398e-01	ci left: 1.248450e-05	ci right 2.180035e-05	k: 53	n:3180000
Cons ci ratio: 6.432990e-03	ci left: 1.042214e-01	ci right 1.048944e-01	k: 332493	n:3180000
KS ci ratio: 5.489053e-01	ci left: 1.167014e-05	ci right 2.072912e-05	k: 50	n:3180000
NRAS   3180000 perm   4124 sec   (771 perm/sec)   p_kst 1.572327e-05   p_cons 1.045575e-01   p_joint 1.666667e-05

Joint ci ratio: 5.334398e-01	ci left: 1.244536e-05	ci right 2.173201e-05	k: 53	n:3190000
Cons ci ratio: 6.422690e-03	ci left: 1.042281e-01	ci right 1.048999e-01	k: 333558	n:3190000
KS ci ratio: 5.489053e-01	ci left: 1.163355e-05	ci right 2.066414e-05	k: 50	n:3190000
NRAS   3190000 perm   4147 sec   (769 perm/sec)   p_kst 1.567398e-05   p_cons 1.045636e-01   p_joint 1.661442e-05

Joint ci ratio: 5.334398e-01	ci left: 1.240647e-05	ci right 2.166410e-05	k: 53	n:3200000
Cons ci ratio: 6.412953e-03	ci left: 1.042196e-01	ci right 1.048904e-01	k: 334575	n:3200000
KS ci ratio: 5.489053e-01	ci left: 1.159720e-05	ci right 2.059956e-05	k: 50	n:3200000
NRAS   3200000 perm   4171 sec   (767 perm/sec)   p_kst 1.562500e-05   p_cons 1.045547e-01   p_joint 1.656250e-05

Joint ci ratio: 5.334399e-01	ci left: 1.236782e-05	ci right 2.159661e-05	k: 53	n:3210000
Cons ci ratio: 6.402440e-03	ci left: 1.042352e-01	ci right 1.049050e-01	k: 335669	n:3210000
KS ci ratio: 5.489053e-01	ci left: 1.156107e-05	ci right 2.053539e-05	k: 50	n:3210000
NRAS   3210000 perm   4195 sec   (765 perm/sec)   p_kst 1.557632e-05   p_cons 1.045698e-01   p_joint 1.651090e-05

Joint ci ratio: 5.334399e-01	ci left: 1.232941e-05	ci right 2.152954e-05	k: 53	n:3220000
Cons ci ratio: 6.393018e-03	ci left: 1.042203e-01	ci right 1.048891e-01	k: 336665	n:3220000
KS ci ratio: 5.489054e-01	ci left: 1.152517e-05	ci right 2.047162e-05	k: 50	n:3220000
NRAS   3220000 perm   4219 sec   (763 perm/sec)   p_kst 1.552795e-05   p_cons 1.045543e-01   p_joint 1.645963e-05

Joint ci ratio: 5.285681e-01	ci left: 1.255930e-05	ci right 2.181366e-05	k: 54	n:3230000
Cons ci ratio: 6.383521e-03	ci left: 1.042089e-01	ci right 1.048766e-01	k: 337672	n:3230000
KS ci ratio: 5.489054e-01	ci left: 1.148948e-05	ci right 2.040824e-05	k: 50	n:3230000
NRAS   3230000 perm   4243 sec   (761 perm/sec)   p_kst 1.547988e-05   p_cons 1.045424e-01   p_joint 1.671827e-05

Joint ci ratio: 5.285681e-01	ci left: 1.252054e-05	ci right 2.174633e-05	k: 54	n:3240000
Cons ci ratio: 6.373068e-03	ci left: 1.042269e-01	ci right 1.048936e-01	k: 338774	n:3240000
KS ci ratio: 5.489054e-01	ci left: 1.145402e-05	ci right 2.034525e-05	k: 50	n:3240000
NRAS   3240000 perm   4267 sec   (759 perm/sec)   p_kst 1.543210e-05   p_cons 1.045599e-01   p_joint 1.666667e-05

Joint ci ratio: 5.285681e-01	ci left: 1.248201e-05	ci right 2.167942e-05	k: 54	n:3250000
Cons ci ratio: 6.363115e-03	ci left: 1.042315e-01	ci right 1.048972e-01	k: 339833	n:3250000
KS ci ratio: 5.489054e-01	ci left: 1.141878e-05	ci right 2.028265e-05	k: 50	n:3250000
NRAS   3250000 perm   4292 sec   (757 perm/sec)   p_kst 1.538462e-05   p_cons 1.045640e-01   p_joint 1.661538e-05

Joint ci ratio: 5.285682e-01	ci left: 1.244372e-05	ci right 2.161292e-05	k: 54	n:3260000
Cons ci ratio: 6.353407e-03	ci left: 1.042303e-01	ci right 1.048949e-01	k: 340873	n:3260000
KS ci ratio: 5.489054e-01	ci left: 1.138375e-05	ci right 2.022043e-05	k: 50	n:3260000
NRAS   3260000 perm   4316 sec   (755 perm/sec)   p_kst 1.533742e-05   p_cons 1.045623e-01   p_joint 1.656442e-05

Joint ci ratio: 5.285682e-01	ci left: 1.240567e-05	ci right 2.154682e-05	k: 54	n:3270000
Cons ci ratio: 6.344075e-03	ci left: 1.042193e-01	ci right 1.048829e-01	k: 341881	n:3270000
KS ci ratio: 5.489054e-01	ci left: 1.134894e-05	ci right 2.015860e-05	k: 50	n:3270000
NRAS   3270000 perm   4341 sec   (753 perm/sec)   p_kst 1.529052e-05   p_cons 1.045508e-01   p_joint 1.651376e-05

Joint ci ratio: 5.285682e-01	ci left: 1.236785e-05	ci right 2.148113e-05	k: 54	n:3280000
Cons ci ratio: 6.334216e-03	ci left: 1.042252e-01	ci right 1.048877e-01	k: 342944	n:3280000
KS ci ratio: 5.489054e-01	ci left: 1.131434e-05	ci right 2.009714e-05	k: 50	n:3280000
NRAS   3280000 perm   4365 sec   (751 perm/sec)   p_kst 1.524390e-05   p_cons 1.045561e-01   p_joint 1.646341e-05

Joint ci ratio: 5.285682e-01	ci left: 1.233025e-05	ci right 2.141584e-05	k: 54	n:3290000
Cons ci ratio: 6.324332e-03	ci left: 1.042331e-01	ci right 1.048947e-01	k: 344014	n:3290000
KS ci ratio: 5.489055e-01	ci left: 1.127995e-05	ci right 2.003605e-05	k: 50	n:3290000
NRAS   3290000 perm   4390 sec   (749 perm/sec)   p_kst 1.519757e-05   p_cons 1.045635e-01   p_joint 1.641337e-05

Joint ci ratio: 5.285682e-01	ci left: 1.229289e-05	ci right 2.135094e-05	k: 54	n:3300000
Cons ci ratio: 6.314769e-03	ci left: 1.042328e-01	ci right 1.048934e-01	k: 345057	n:3300000
KS ci ratio: 5.489055e-01	ci left: 1.124577e-05	ci right 1.997534e-05	k: 50	n:3300000
NRAS   3300000 perm   4415 sec   (748 perm/sec)   p_kst 1.515152e-05   p_cons 1.045627e-01   p_joint 1.636364e-05

Joint ci ratio: 5.285682e-01	ci left: 1.225575e-05	ci right 2.128644e-05	k: 54	n:3310000
Cons ci ratio: 6.305647e-03	ci left: 1.042207e-01	ci right 1.048803e-01	k: 346061	n:3310000
KS ci ratio: 5.489055e-01	ci left: 1.121179e-05	ci right 1.991499e-05	k: 50	n:3310000
NRAS   3310000 perm   4439 sec   (746 perm/sec)   p_kst 1.510574e-05   p_cons 1.045502e-01   p_joint 1.631420e-05

Joint ci ratio: 5.285682e-01	ci left: 1.221884e-05	ci right 2.122232e-05	k: 54	n:3320000
Cons ci ratio: 6.295895e-03	ci left: 1.042286e-01	ci right 1.048872e-01	k: 347131	n:3320000
KS ci ratio: 5.489055e-01	ci left: 1.117802e-05	ci right 1.985500e-05	k: 50	n:3320000
NRAS   3320000 perm   4464 sec   (744 perm/sec)   p_kst 1.506024e-05   p_cons 1.045575e-01   p_joint 1.626506e-05

Joint ci ratio: 5.285682e-01	ci left: 1.218214e-05	ci right 2.115859e-05	k: 54	n:3330000
Cons ci ratio: 6.287116e-03	ci left: 1.042088e-01	ci right 1.048663e-01	k: 348109	n:3330000
KS ci ratio: 5.489055e-01	ci left: 1.114445e-05	ci right 1.979538e-05	k: 50	n:3330000
NRAS   3330000 perm   4488 sec   (742 perm/sec)   p_kst 1.501502e-05   p_cons 1.045372e-01   p_joint 1.621622e-05

Joint ci ratio: 5.285683e-01	ci left: 1.214567e-05	ci right 2.109524e-05	k: 54	n:3340000
Cons ci ratio: 6.278173e-03	ci left: 1.041951e-01	ci right 1.048516e-01	k: 349107	n:3340000
KS ci ratio: 5.489055e-01	ci left: 1.111109e-05	ci right 1.973611e-05	k: 50	n:3340000
NRAS   3340000 perm   4513 sec   (740 perm/sec)   p_kst 1.497006e-05   p_cons 1.045231e-01   p_joint 1.616766e-05

Joint ci ratio: 5.285683e-01	ci left: 1.210941e-05	ci right 2.103227e-05	k: 54	n:3350000
Cons ci ratio: 6.269007e-03	ci left: 1.041893e-01	ci right 1.048448e-01	k: 350131	n:3350000
KS ci ratio: 5.436019e-01	ci left: 1.133520e-05	ci right 2.001654e-05	k: 51	n:3350000
NRAS   3350000 perm   4538 sec   (738 perm/sec)   p_kst 1.522388e-05   p_cons 1.045167e-01   p_joint 1.611940e-05

Joint ci ratio: 5.285683e-01	ci left: 1.207337e-05	ci right 2.096968e-05	k: 54	n:3360000
Cons ci ratio: 6.259673e-03	ci left: 1.041897e-01	ci right 1.048443e-01	k: 351176	n:3360000
KS ci ratio: 5.436019e-01	ci left: 1.130146e-05	ci right 1.995697e-05	k: 51	n:3360000
NRAS   3360000 perm   4563 sec   (736 perm/sec)   p_kst 1.517857e-05   p_cons 1.045167e-01   p_joint 1.607143e-05

Joint ci ratio: 5.285683e-01	ci left: 1.203755e-05	ci right 2.090745e-05	k: 54	n:3370000
Cons ci ratio: 6.250510e-03	ci left: 1.041863e-01	ci right 1.048399e-01	k: 352208	n:3370000
KS ci ratio: 5.436019e-01	ci left: 1.126793e-05	ci right 1.989775e-05	k: 51	n:3370000
NRAS   3370000 perm   4588 sec   (735 perm/sec)   p_kst 1.513353e-05   p_cons 1.045128e-01   p_joint 1.602374e-05

Joint ci ratio: 5.285683e-01	ci left: 1.200193e-05	ci right 2.084560e-05	k: 54	n:3380000
Cons ci ratio: 6.240557e-03	ci left: 1.042077e-01	ci right 1.048604e-01	k: 353324	n:3380000
KS ci ratio: 5.436019e-01	ci left: 1.123459e-05	ci right 1.983888e-05	k: 51	n:3380000
NRAS   3380000 perm   4613 sec   (733 perm/sec)   p_kst 1.508876e-05   p_cons 1.045337e-01   p_joint 1.597633e-05

Joint ci ratio: 5.285683e-01	ci left: 1.196653e-05	ci right 2.078410e-05	k: 54	n:3390000
Cons ci ratio: 6.231222e-03	ci left: 1.042120e-01	ci right 1.048636e-01	k: 354382	n:3390000
KS ci ratio: 5.436019e-01	ci left: 1.120145e-05	ci right 1.978036e-05	k: 51	n:3390000
NRAS   3390000 perm   4638 sec   (731 perm/sec)   p_kst 1.504425e-05   p_cons 1.045375e-01   p_joint 1.592920e-05

Joint ci ratio: 5.285683e-01	ci left: 1.193133e-05	ci right 2.072298e-05	k: 54	n:3400000
Cons ci ratio: 6.222104e-03	ci left: 1.042109e-01	ci right 1.048616e-01	k: 355422	n:3400000
KS ci ratio: 5.436020e-01	ci left: 1.116850e-05	ci right 1.972218e-05	k: 51	n:3400000
NRAS   3400000 perm   4663 sec   (729 perm/sec)   p_kst 1.500000e-05   p_cons 1.045359e-01   p_joint 1.588235e-05

Joint ci ratio: 5.238277e-01	ci left: 1.215062e-05	ci right 2.099410e-05	k: 55	n:3410000
Cons ci ratio: 6.212744e-03	ci left: 1.042183e-01	ci right 1.048680e-01	k: 356491	n:3410000
KS ci ratio: 5.384491e-01	ci left: 1.138890e-05	ci right 1.999734e-05	k: 52	n:3410000
NRAS   3410000 perm   4688 sec   (727 perm/sec)   p_kst 1.524927e-05   p_cons 1.045428e-01   p_joint 1.612903e-05

Joint ci ratio: 5.238277e-01	ci left: 1.211509e-05	ci right 2.093272e-05	k: 55	n:3420000
Cons ci ratio: 6.203552e-03	ci left: 1.042218e-01	ci right 1.048707e-01	k: 357547	n:3420000
KS ci ratio: 5.384492e-01	ci left: 1.135560e-05	ci right 1.993887e-05	k: 52	n:3420000
NRAS   3420000 perm   4713 sec   (726 perm/sec)   p_kst 1.520468e-05   p_cons 1.045459e-01   p_joint 1.608187e-05

Joint ci ratio: 5.238277e-01	ci left: 1.207977e-05	ci right 2.087169e-05	k: 55	n:3430000
Cons ci ratio: 6.194353e-03	ci left: 1.042268e-01	ci right 1.048747e-01	k: 358608	n:3430000
KS ci ratio: 5.384492e-01	ci left: 1.132249e-05	ci right 1.988073e-05	k: 52	n:3430000
NRAS   3430000 perm   4739 sec   (724 perm/sec)   p_kst 1.516035e-05   p_cons 1.045504e-01   p_joint 1.603499e-05

Joint ci ratio: 5.238277e-01	ci left: 1.204465e-05	ci right 2.081101e-05	k: 55	n:3440000
Cons ci ratio: 6.185290e-03	ci left: 1.042289e-01	ci right 1.048759e-01	k: 359659	n:3440000
KS ci ratio: 5.384492e-01	ci left: 1.128958e-05	ci right 1.982294e-05	k: 52	n:3440000
NRAS   3440000 perm   4764 sec   (722 perm/sec)   p_kst 1.511628e-05   p_cons 1.045520e-01   p_joint 1.598837e-05

Joint ci ratio: 5.238277e-01	ci left: 1.200974e-05	ci right 2.075069e-05	k: 55	n:3450000
Cons ci ratio: 6.176181e-03	ci left: 1.042335e-01	ci right 1.048796e-01	k: 360719	n:3450000
KS ci ratio: 5.384492e-01	ci left: 1.125686e-05	ci right 1.976548e-05	k: 52	n:3450000
NRAS   3450000 perm   4790 sec   (720 perm/sec)   p_kst 1.507246e-05   p_cons 1.045562e-01   p_joint 1.594203e-05

Joint ci ratio: 5.192123e-01	ci left: 1.222598e-05	ci right 2.101748e-05	k: 56	n:3460000
Cons ci ratio: 6.167588e-03	ci left: 1.042237e-01	ci right 1.048688e-01	k: 361729	n:3460000
KS ci ratio: 5.384492e-01	ci left: 1.122432e-05	ci right 1.970836e-05	k: 52	n:3460000
NRAS   3460000 perm   4815 sec   (719 perm/sec)   p_kst 1.502890e-05   p_cons 1.045460e-01   p_joint 1.618497e-05

Joint ci ratio: 5.147168e-01	ci left: 1.244130e-05	ci right 2.128240e-05	k: 57	n:3470000
Cons ci ratio: 6.158604e-03	ci left: 1.042270e-01	ci right 1.048711e-01	k: 362784	n:3470000
KS ci ratio: 5.334402e-01	ci left: 1.144113e-05	ci right 1.997843e-05	k: 53	n:3470000
NRAS   3470000 perm   4841 sec   (717 perm/sec)   p_kst 1.527378e-05   p_cons 1.045487e-01   p_joint 1.642651e-05

Joint ci ratio: 5.147169e-01	ci left: 1.240555e-05	ci right 2.122124e-05	k: 57	n:3480000
Cons ci ratio: 6.149829e-03	ci left: 1.042250e-01	ci right 1.048682e-01	k: 363821	n:3480000
KS ci ratio: 5.334402e-01	ci left: 1.140825e-05	ci right 1.992102e-05	k: 53	n:3480000
NRAS   3480000 perm   4867 sec   (715 perm/sec)   p_kst 1.522989e-05   p_cons 1.045463e-01   p_joint 1.637931e-05

Joint ci ratio: 5.147169e-01	ci left: 1.237001e-05	ci right 2.116044e-05	k: 57	n:3490000
Cons ci ratio: 6.140979e-03	ci left: 1.042265e-01	ci right 1.048688e-01	k: 364870	n:3490000
KS ci ratio: 5.334402e-01	ci left: 1.137556e-05	ci right 1.986394e-05	k: 53	n:3490000
NRAS   3490000 perm   4892 sec   (713 perm/sec)   p_kst 1.518625e-05   p_cons 1.045473e-01   p_joint 1.633238e-05

Joint ci ratio: 5.147169e-01	ci left: 1.233466e-05	ci right 2.109998e-05	k: 57	n:3500000
Cons ci ratio: 6.131867e-03	ci left: 1.042371e-01	ci right 1.048785e-01	k: 365951	n:3500000
KS ci ratio: 5.334402e-01	ci left: 1.134306e-05	ci right 1.980718e-05	k: 53	n:3500000
NRAS   3500000 perm   4918 sec   (712 perm/sec)   p_kst 1.514286e-05   p_cons 1.045574e-01   p_joint 1.628571e-05

Joint ci ratio: 5.147169e-01	ci left: 1.229952e-05	ci right 2.103987e-05	k: 57	n:3510000
Cons ci ratio: 6.123439e-03	ci left: 1.042280e-01	ci right 1.048684e-01	k: 366963	n:3510000
KS ci ratio: 5.334403e-01	ci left: 1.131074e-05	ci right 1.975075e-05	k: 53	n:3510000
NRAS   3510000 perm   4944 sec   (710 perm/sec)   p_kst 1.509972e-05   p_cons 1.045479e-01   p_joint 1.623932e-05

Joint ci ratio: 5.147169e-01	ci left: 1.226458e-05	ci right 2.098010e-05	k: 57	n:3520000
Cons ci ratio: 6.115120e-03	ci left: 1.042166e-01	ci right 1.048562e-01	k: 367967	n:3520000
KS ci ratio: 5.334403e-01	ci left: 1.127861e-05	ci right 1.969464e-05	k: 53	n:3520000
NRAS   3520000 perm   4970 sec   (708 perm/sec)   p_kst 1.505682e-05   p_cons 1.045361e-01   p_joint 1.619318e-05

Joint ci ratio: 5.147169e-01	ci left: 1.222984e-05	ci right 2.092066e-05	k: 57	n:3530000
Cons ci ratio: 6.106529e-03	ci left: 1.042147e-01	ci right 1.048533e-01	k: 369004	n:3530000
KS ci ratio: 5.334403e-01	ci left: 1.124666e-05	ci right 1.963885e-05	k: 53	n:3530000
NRAS   3530000 perm   4996 sec   (707 perm/sec)   p_kst 1.501416e-05   p_cons 1.045337e-01   p_joint 1.614731e-05

Joint ci ratio: 5.147169e-01	ci left: 1.219529e-05	ci right 2.086156e-05	k: 57	n:3540000
Cons ci ratio: 6.098030e-03	ci left: 1.042111e-01	ci right 1.048488e-01	k: 370035	n:3540000
KS ci ratio: 5.334403e-01	ci left: 1.121489e-05	ci right 1.958337e-05	k: 53	n:3540000
NRAS   3540000 perm   5022 sec   (705 perm/sec)   p_kst 1.497175e-05   p_cons 1.045297e-01   p_joint 1.610169e-05

Joint ci ratio: 5.147169e-01	ci left: 1.216094e-05	ci right 2.080280e-05	k: 57	n:3550000
Cons ci ratio: 6.089081e-03	ci left: 1.042225e-01	ci right 1.048593e-01	k: 371119	n:3550000
KS ci ratio: 5.334403e-01	ci left: 1.118330e-05	ci right 1.952821e-05	k: 53	n:3550000
NRAS   3550000 perm   5048 sec   (703 perm/sec)   p_kst 1.492958e-05   p_cons 1.045406e-01   p_joint 1.605634e-05

Joint ci ratio: 5.147170e-01	ci left: 1.212678e-05	ci right 2.074436e-05	k: 57	n:3560000
Cons ci ratio: 6.080399e-03	ci left: 1.042267e-01	ci right 1.048627e-01	k: 372178	n:3560000
KS ci ratio: 5.334403e-01	ci left: 1.115188e-05	ci right 1.947336e-05	k: 53	n:3560000
NRAS   3560000 perm   5074 sec   (702 perm/sec)   p_kst 1.488764e-05   p_cons 1.045444e-01   p_joint 1.601124e-05

Joint ci ratio: 5.147170e-01	ci left: 1.209281e-05	ci right 2.068626e-05	k: 57	n:3570000
Cons ci ratio: 6.071917e-03	ci left: 1.042259e-01	ci right 1.048610e-01	k: 373219	n:3570000
KS ci ratio: 5.334403e-01	ci left: 1.112065e-05	ci right 1.941881e-05	k: 53	n:3570000
NRAS   3570000 perm   5101 sec   (700 perm/sec)   p_kst 1.484594e-05   p_cons 1.045431e-01   p_joint 1.596639e-05

Joint ci ratio: 5.147170e-01	ci left: 1.205903e-05	ci right 2.062847e-05	k: 57	n:3580000
Cons ci ratio: 6.063353e-03	ci left: 1.042288e-01	ci right 1.048629e-01	k: 374273	n:3580000
KS ci ratio: 5.334403e-01	ci left: 1.108958e-05	ci right 1.936457e-05	k: 53	n:3580000
NRAS   3580000 perm   5127 sec   (698 perm/sec)   p_kst 1.480447e-05   p_cons 1.045455e-01   p_joint 1.592179e-05

Joint ci ratio: 5.192125e-01	ci left: 1.178325e-05	ci right 2.025640e-05	k: 56	n:3590000
Cons ci ratio: 6.054952e-03	ci left: 1.042277e-01	ci right 1.048610e-01	k: 375313	n:3590000
KS ci ratio: 5.334403e-01	ci left: 1.105869e-05	ci right 1.931063e-05	k: 53	n:3590000
NRAS   3590000 perm   5154 sec   (697 perm/sec)   p_kst 1.476323e-05   p_cons 1.045440e-01   p_joint 1.559889e-05

Joint ci ratio: 5.192125e-01	ci left: 1.175052e-05	ci right 2.020014e-05	k: 56	n:3600000
Cons ci ratio: 6.046549e-03	ci left: 1.042277e-01	ci right 1.048601e-01	k: 376357	n:3600000
KS ci ratio: 5.334404e-01	ci left: 1.102797e-05	ci right 1.925699e-05	k: 53	n:3600000
NRAS   3600000 perm   5181 sec   (695 perm/sec)   p_kst 1.472222e-05   p_cons 1.045436e-01   p_joint 1.555556e-05

Joint ci ratio: 5.192125e-01	ci left: 1.171797e-05	ci right 2.014418e-05	k: 56	n:3610000
Cons ci ratio: 6.038137e-03	ci left: 1.042292e-01	ci right 1.048607e-01	k: 377406	n:3610000
KS ci ratio: 5.334404e-01	ci left: 1.099743e-05	ci right 1.920364e-05	k: 53	n:3610000
NRAS   3610000 perm   5207 sec   (693 perm/sec)   p_kst 1.468144e-05   p_cons 1.045446e-01   p_joint 1.551247e-05

Joint ci ratio: 5.192125e-01	ci left: 1.168560e-05	ci right 2.008853e-05	k: 56	n:3620000
Cons ci ratio: 6.029777e-03	ci left: 1.042300e-01	ci right 1.048607e-01	k: 378453	n:3620000
KS ci ratio: 5.334404e-01	ci left: 1.096705e-05	ci right 1.915059e-05	k: 53	n:3620000
NRAS   3620000 perm   5234 sec   (692 perm/sec)   p_kst 1.464088e-05   p_cons 1.045450e-01   p_joint 1.546961e-05

Joint ci ratio: 5.147170e-01	ci left: 1.189293e-05	ci right 2.034434e-05	k: 57	n:3630000
Cons ci ratio: 6.021754e-03	ci left: 1.042215e-01	ci right 1.048513e-01	k: 379466	n:3630000
KS ci ratio: 5.334404e-01	ci left: 1.093683e-05	ci right 1.909784e-05	k: 53	n:3630000
NRAS   3630000 perm   5261 sec   (690 perm/sec)   p_kst 1.460055e-05   p_cons 1.045361e-01   p_joint 1.570248e-05

Joint ci ratio: 5.147170e-01	ci left: 1.186025e-05	ci right 2.028845e-05	k: 57	n:3640000
Cons ci ratio: 6.013674e-03	ci left: 1.042158e-01	ci right 1.048447e-01	k: 380489	n:3640000
KS ci ratio: 5.334404e-01	ci left: 1.090679e-05	ci right 1.904537e-05	k: 53	n:3640000
NRAS   3640000 perm   5288 sec   (688 perm/sec)   p_kst 1.456044e-05   p_cons 1.045299e-01   p_joint 1.565934e-05

Joint ci ratio: 5.147171e-01	ci left: 1.182776e-05	ci right 2.023286e-05	k: 57	n:3650000
Cons ci ratio: 6.005363e-03	ci left: 1.042184e-01	ci right 1.048464e-01	k: 381542	n:3650000
KS ci ratio: 5.334404e-01	ci left: 1.087691e-05	ci right 1.899319e-05	k: 53	n:3650000
NRAS   3650000 perm   5315 sec   (687 perm/sec)   p_kst 1.452055e-05   p_cons 1.045321e-01   p_joint 1.561644e-05

Joint ci ratio: 5.103363e-01	ci left: 1.203331e-05	ci right 2.048587e-05	k: 58	n:3660000
Cons ci ratio: 5.996963e-03	ci left: 1.042247e-01	ci right 1.048519e-01	k: 382609	n:3660000
KS ci ratio: 5.285686e-01	ci left: 1.108375e-05	ci right 1.925085e-05	k: 54	n:3660000
NRAS   3660000 perm   5342 sec   (685 perm/sec)   p_kst 1.475410e-05   p_cons 1.045380e-01   p_joint 1.584699e-05

Joint ci ratio: 5.103364e-01	ci left: 1.200052e-05	ci right 2.043005e-05	k: 58	n:3670000
Cons ci ratio: 5.988538e-03	ci left: 1.042329e-01	ci right 1.048593e-01	k: 383683	n:3670000
KS ci ratio: 5.285687e-01	ci left: 1.105355e-05	ci right 1.919840e-05	k: 54	n:3670000
NRAS   3670000 perm   5370 sec   (683 perm/sec)   p_kst 1.471390e-05   p_cons 1.045458e-01   p_joint 1.580381e-05

Joint ci ratio: 5.103364e-01	ci left: 1.196791e-05	ci right 2.037453e-05	k: 58	n:3680000
Cons ci ratio: 5.980756e-03	ci left: 1.042221e-01	ci right 1.048476e-01	k: 384687	n:3680000
KS ci ratio: 5.285687e-01	ci left: 1.102351e-05	ci right 1.914623e-05	k: 54	n:3680000
NRAS   3680000 perm   5397 sec   (682 perm/sec)   p_kst 1.467391e-05   p_cons 1.045345e-01   p_joint 1.576087e-05

Joint ci ratio: 5.103364e-01	ci left: 1.193548e-05	ci right 2.031932e-05	k: 58	n:3690000
Cons ci ratio: 5.972762e-03	ci left: 1.042189e-01	ci right 1.048435e-01	k: 385719	n:3690000
KS ci ratio: 5.285687e-01	ci left: 1.099364e-05	ci right 1.909434e-05	k: 54	n:3690000
NRAS   3690000 perm   5424 sec   (680 perm/sec)   p_kst 1.463415e-05   p_cons 1.045309e-01   p_joint 1.571816e-05

Joint ci ratio: 5.103364e-01	ci left: 1.190322e-05	ci right 2.026440e-05	k: 58	n:3700000
Cons ci ratio: 5.964903e-03	ci left: 1.042125e-01	ci right 1.048362e-01	k: 386739	n:3700000
KS ci ratio: 5.285687e-01	ci left: 1.096393e-05	ci right 1.904274e-05	k: 54	n:3700000
NRAS   3700000 perm   5452 sec   (679 perm/sec)   p_kst 1.459459e-05   p_cons 1.045241e-01   p_joint 1.567568e-05

Joint ci ratio: 5.103364e-01	ci left: 1.187113e-05	ci right 2.020978e-05	k: 58	n:3710000
Cons ci ratio: 5.956921e-03	ci left: 1.042110e-01	ci right 1.048339e-01	k: 387777	n:3710000
KS ci ratio: 5.285687e-01	ci left: 1.093437e-05	ci right 1.899141e-05	k: 54	n:3710000
NRAS   3710000 perm   5478 sec   (677 perm/sec)   p_kst 1.455526e-05   p_cons 1.045221e-01   p_joint 1.563342e-05

Joint ci ratio: 5.103364e-01	ci left: 1.183922e-05	ci right 2.015545e-05	k: 58	n:3720000
Cons ci ratio: 5.948518e-03	ci left: 1.042237e-01	ci right 1.048458e-01	k: 388868	n:3720000
KS ci ratio: 5.238280e-01	ci left: 1.113806e-05	ci right 1.924460e-05	k: 55	n:3720000
NRAS   3720000 perm   5506 sec   (676 perm/sec)   p_kst 1.478495e-05   p_cons 1.045344e-01   p_joint 1.559140e-05

Joint ci ratio: 5.103364e-01	ci left: 1.180748e-05	ci right 2.010142e-05	k: 58	n:3730000
Cons ci ratio: 5.940312e-03	ci left: 1.042312e-01	ci right 1.048525e-01	k: 389940	n:3730000
KS ci ratio: 5.238280e-01	ci left: 1.110820e-05	ci right 1.919300e-05	k: 55	n:3730000
NRAS   3730000 perm   5533 sec   (674 perm/sec)   p_kst 1.474531e-05   p_cons 1.045416e-01   p_joint 1.554960e-05

Joint ci ratio: 5.103364e-01	ci left: 1.177591e-05	ci right 2.004767e-05	k: 58	n:3740000
Cons ci ratio: 5.932139e-03	ci left: 1.042387e-01	ci right 1.048592e-01	k: 391012	n:3740000
KS ci ratio: 5.238280e-01	ci left: 1.107850e-05	ci right 1.914168e-05	k: 55	n:3740000
NRAS   3740000 perm   5561 sec   (673 perm/sec)   p_kst 1.470588e-05   p_cons 1.045487e-01   p_joint 1.550802e-05

Joint ci ratio: 5.103364e-01	ci left: 1.174451e-05	ci right 1.999421e-05	k: 58	n:3750000
Cons ci ratio: 5.924549e-03	ci left: 1.042289e-01	ci right 1.048485e-01	k: 392019	n:3750000
KS ci ratio: 5.238281e-01	ci left: 1.104896e-05	ci right 1.909064e-05	k: 55	n:3750000
NRAS   3750000 perm   5589 sec   (671 perm/sec)   p_kst 1.466667e-05   p_cons 1.045384e-01   p_joint 1.546667e-05

Joint ci ratio: 5.103365e-01	ci left: 1.171327e-05	ci right 1.994103e-05	k: 58	n:3760000
Cons ci ratio: 5.916778e-03	ci left: 1.042258e-01	ci right 1.048445e-01	k: 393051	n:3760000
KS ci ratio: 5.238281e-01	ci left: 1.101957e-05	ci right 1.903987e-05	k: 55	n:3760000
NRAS   3760000 perm   5617 sec   (669 perm/sec)   p_kst 1.462766e-05   p_cons 1.045348e-01   p_joint 1.542553e-05

Joint ci ratio: 5.103365e-01	ci left: 1.168220e-05	ci right 1.988814e-05	k: 58	n:3770000
Cons ci ratio: 5.909113e-03	ci left: 1.042203e-01	ci right 1.048382e-01	k: 394074	n:3770000
KS ci ratio: 5.238281e-01	ci left: 1.099034e-05	ci right 1.898936e-05	k: 55	n:3770000
NRAS   3770000 perm   5645 sec   (668 perm/sec)   p_kst 1.458886e-05   p_cons 1.045289e-01   p_joint 1.538462e-05

Joint ci ratio: 5.103365e-01	ci left: 1.165130e-05	ci right 1.983552e-05	k: 58	n:3780000
Cons ci ratio: 5.901686e-03	ci left: 1.042082e-01	ci right 1.048252e-01	k: 395072	n:3780000
KS ci ratio: 5.238281e-01	ci left: 1.096127e-05	ci right 1.893913e-05	k: 55	n:3780000
NRAS   3780000 perm   5672 sec   (666 perm/sec)   p_kst 1.455026e-05   p_cons 1.045164e-01   p_joint 1.534392e-05

Joint ci ratio: 5.103365e-01	ci left: 1.162056e-05	ci right 1.978319e-05	k: 58	n:3790000
Cons ci ratio: 5.893639e-03	ci left: 1.042167e-01	ci right 1.048330e-01	k: 396148	n:3790000
KS ci ratio: 5.238281e-01	ci left: 1.093235e-05	ci right 1.888916e-05	k: 55	n:3790000
NRAS   3790000 perm   5700 sec   (665 perm/sec)   p_kst 1.451187e-05   p_cons 1.045245e-01   p_joint 1.530343e-05

Joint ci ratio: 5.103365e-01	ci left: 1.158998e-05	ci right 1.973113e-05	k: 58	n:3800000
Cons ci ratio: 5.885964e-03	ci left: 1.042144e-01	ci right 1.048299e-01	k: 397183	n:3800000
KS ci ratio: 5.238281e-01	ci left: 1.090358e-05	ci right 1.883945e-05	k: 55	n:3800000
NRAS   3800000 perm   5729 sec   (663 perm/sec)   p_kst 1.447368e-05   p_cons 1.045218e-01   p_joint 1.526316e-05

Joint ci ratio: 5.103365e-01	ci left: 1.155956e-05	ci right 1.967934e-05	k: 58	n:3810000
Cons ci ratio: 5.878294e-03	ci left: 1.042129e-01	ci right 1.048276e-01	k: 398221	n:3810000
KS ci ratio: 5.238281e-01	ci left: 1.087496e-05	ci right 1.879000e-05	k: 55	n:3810000
NRAS   3810000 perm   5757 sec   (662 perm/sec)   p_kst 1.443570e-05   p_cons 1.045199e-01   p_joint 1.522310e-05

Joint ci ratio: 5.103365e-01	ci left: 1.152929e-05	ci right 1.962782e-05	k: 58	n:3820000
Cons ci ratio: 5.871147e-03	ci left: 1.041958e-01	ci right 1.048096e-01	k: 399199	n:3820000
KS ci ratio: 5.192127e-01	ci left: 1.107379e-05	ci right 1.903678e-05	k: 56	n:3820000
NRAS   3820000 perm   5785 sec   (660 perm/sec)   p_kst 1.465969e-05   p_cons 1.045024e-01   p_joint 1.518325e-05

Joint ci ratio: 5.103365e-01	ci left: 1.149919e-05	ci right 1.957658e-05	k: 58	n:3830000
Cons ci ratio: 5.863428e-03	ci left: 1.041977e-01	ci right 1.048107e-01	k: 400250	n:3830000
KS ci ratio: 5.192128e-01	ci left: 1.104487e-05	ci right 1.898708e-05	k: 56	n:3830000
NRAS   3830000 perm   5813 sec   (659 perm/sec)   p_kst 1.462141e-05   p_cons 1.045039e-01   p_joint 1.514360e-05

Joint ci ratio: 5.103365e-01	ci left: 1.146925e-05	ci right 1.952559e-05	k: 58	n:3840000
Cons ci ratio: 5.855715e-03	ci left: 1.042004e-01	ci right 1.048127e-01	k: 401304	n:3840000
KS ci ratio: 5.192128e-01	ci left: 1.101611e-05	ci right 1.893763e-05	k: 56	n:3840000
NRAS   3840000 perm   5842 sec   (657 perm/sec)   p_kst 1.458333e-05   p_cons 1.045062e-01   p_joint 1.510417e-05

Joint ci ratio: 5.103366e-01	ci left: 1.143946e-05	ci right 1.947488e-05	k: 58	n:3850000
Cons ci ratio: 5.848163e-03	ci left: 1.041990e-01	ci right 1.048104e-01	k: 402342	n:3850000
KS ci ratio: 5.192128e-01	ci left: 1.098750e-05	ci right 1.888844e-05	k: 56	n:3850000
NRAS   3850000 perm   5870 sec   (656 perm/sec)   p_kst 1.454545e-05   p_cons 1.045044e-01   p_joint 1.506494e-05

Joint ci ratio: 5.103366e-01	ci left: 1.140982e-05	ci right 1.942443e-05	k: 58	n:3860000
Cons ci ratio: 5.840817e-03	ci left: 1.041919e-01	ci right 1.048025e-01	k: 403358	n:3860000
KS ci ratio: 5.192128e-01	ci left: 1.095903e-05	ci right 1.883951e-05	k: 56	n:3860000
NRAS   3860000 perm   5898 sec   (654 perm/sec)   p_kst 1.450777e-05   p_cons 1.044969e-01   p_joint 1.502591e-05

Joint ci ratio: 5.103366e-01	ci left: 1.138034e-05	ci right 1.937423e-05	k: 58	n:3870000
Cons ci ratio: 5.833202e-03	ci left: 1.041944e-01	ci right 1.048042e-01	k: 404411	n:3870000
KS ci ratio: 5.147173e-01	ci left: 1.115538e-05	ci right 1.908267e-05	k: 57	n:3870000
NRAS   3870000 perm   5926 sec   (653 perm/sec)   p_kst 1.472868e-05   p_cons 1.044990e-01   p_joint 1.498708e-05

Joint ci ratio: 5.103366e-01	ci left: 1.135101e-05	ci right 1.932430e-05	k: 58	n:3880000
Cons ci ratio: 5.825624e-03	ci left: 1.041966e-01	ci right 1.048056e-01	k: 405463	n:3880000
KS ci ratio: 5.147173e-01	ci left: 1.112663e-05	ci right 1.903349e-05	k: 57	n:3880000
NRAS   3880000 perm   5955 sec   (652 perm/sec)   p_kst 1.469072e-05   p_cons 1.045008e-01   p_joint 1.494845e-05

Joint ci ratio: 5.103366e-01	ci left: 1.132183e-05	ci right 1.927462e-05	k: 58	n:3890000
Cons ci ratio: 5.817851e-03	ci left: 1.042059e-01	ci right 1.048142e-01	k: 406543	n:3890000
KS ci ratio: 5.147173e-01	ci left: 1.109802e-05	ci right 1.898456e-05	k: 57	n:3890000
NRAS   3890000 perm   5984 sec   (650 perm/sec)   p_kst 1.465296e-05   p_cons 1.045098e-01   p_joint 1.491003e-05

Joint ci ratio: 5.103366e-01	ci left: 1.129280e-05	ci right 1.922520e-05	k: 58	n:3900000
Cons ci ratio: 5.810587e-03	ci left: 1.041999e-01	ci right 1.048074e-01	k: 407563	n:3900000
KS ci ratio: 5.147173e-01	ci left: 1.106957e-05	ci right 1.893589e-05	k: 57	n:3900000
NRAS   3900000 perm   6013 sec   (649 perm/sec)   p_kst 1.461538e-05   p_cons 1.045033e-01   p_joint 1.487179e-05

Joint ci ratio: 5.103366e-01	ci left: 1.126391e-05	ci right 1.917603e-05	k: 58	n:3910000
Cons ci ratio: 5.803446e-03	ci left: 1.041908e-01	ci right 1.047975e-01	k: 408571	n:3910000
KS ci ratio: 5.147173e-01	ci left: 1.104126e-05	ci right 1.888746e-05	k: 57	n:3910000
NRAS   3910000 perm   6041 sec   (647 perm/sec)   p_kst 1.457801e-05   p_cons 1.044939e-01   p_joint 1.483376e-05

Joint ci ratio: 5.192128e-01	ci left: 1.079129e-05	ci right 1.855115e-05	k: 56	n:3920000
Cons ci ratio: 5.795541e-03	ci left: 1.042073e-01	ci right 1.048132e-01	k: 409679	n:3920000
KS ci ratio: 5.147173e-01	ci left: 1.101309e-05	ci right 1.883927e-05	k: 57	n:3920000
NRAS   3920000 perm   6070 sec   (646 perm/sec)   p_kst 1.454082e-05   p_cons 1.045099e-01   p_joint 1.428571e-05

Joint ci ratio: 5.192129e-01	ci left: 1.076383e-05	ci right 1.850394e-05	k: 56	n:3930000
Cons ci ratio: 5.788030e-03	ci left: 1.042120e-01	ci right 1.048171e-01	k: 410741	n:3930000
KS ci ratio: 5.147174e-01	ci left: 1.098507e-05	ci right 1.879134e-05	k: 57	n:3930000
NRAS   3930000 perm   6099 sec   (644 perm/sec)   p_kst 1.450382e-05   p_cons 1.045142e-01   p_joint 1.424936e-05

Joint ci ratio: 5.192129e-01	ci left: 1.073651e-05	ci right 1.845698e-05	k: 56	n:3940000
Cons ci ratio: 5.780540e-03	ci left: 1.042169e-01	ci right 1.048213e-01	k: 411804	n:3940000
KS ci ratio: 5.147174e-01	ci left: 1.095719e-05	ci right 1.874364e-05	k: 57	n:3940000
NRAS   3940000 perm   6129 sec   (643 perm/sec)   p_kst 1.446701e-05   p_cons 1.045188e-01   p_joint 1.421320e-05

Joint ci ratio: 5.192129e-01	ci left: 1.070933e-05	ci right 1.841025e-05	k: 56	n:3950000
Cons ci ratio: 5.773524e-03	ci left: 1.042073e-01	ci right 1.048110e-01	k: 412810	n:3950000
KS ci ratio: 5.147174e-01	ci left: 1.092945e-05	ci right 1.869619e-05	k: 57	n:3950000
NRAS   3950000 perm   6158 sec   (641 perm/sec)   p_kst 1.443038e-05   p_cons 1.045089e-01   p_joint 1.417722e-05

Joint ci ratio: 5.192129e-01	ci left: 1.068229e-05	ci right 1.836376e-05	k: 56	n:3960000
Cons ci ratio: 5.766153e-03	ci left: 1.042102e-01	ci right 1.048131e-01	k: 413865	n:3960000
KS ci ratio: 5.147174e-01	ci left: 1.090185e-05	ci right 1.864898e-05	k: 57	n:3960000
NRAS   3960000 perm   6187 sec   (640 perm/sec)   p_kst 1.439394e-05   p_cons 1.045114e-01   p_joint 1.414141e-05

Joint ci ratio: 5.192129e-01	ci left: 1.065538e-05	ci right 1.831751e-05	k: 56	n:3970000
Cons ci ratio: 5.758902e-03	ci left: 1.042101e-01	ci right 1.048122e-01	k: 414908	n:3970000
KS ci ratio: 5.147174e-01	ci left: 1.087439e-05	ci right 1.860200e-05	k: 57	n:3970000
NRAS   3970000 perm   6216 sec   (639 perm/sec)   p_kst 1.435768e-05   p_cons 1.045108e-01   p_joint 1.410579e-05

Joint ci ratio: 5.192129e-01	ci left: 1.062861e-05	ci right 1.827148e-05	k: 56	n:3980000
Cons ci ratio: 5.751679e-03	ci left: 1.042099e-01	ci right 1.048113e-01	k: 415951	n:3980000
KS ci ratio: 5.147174e-01	ci left: 1.084706e-05	ci right 1.855527e-05	k: 57	n:3980000
NRAS   3980000 perm   6246 sec   (637 perm/sec)   p_kst 1.432161e-05   p_cons 1.045103e-01   p_joint 1.407035e-05

Joint ci ratio: 5.192129e-01	ci left: 1.060197e-05	ci right 1.822569e-05	k: 56	n:3990000
Cons ci ratio: 5.744199e-03	ci left: 1.042190e-01	ci right 1.048196e-01	k: 417031	n:3990000
KS ci ratio: 5.147174e-01	ci left: 1.081988e-05	ci right 1.850876e-05	k: 57	n:3990000
NRAS   3990000 perm   6276 sec   (636 perm/sec)   p_kst 1.428571e-05   p_cons 1.045190e-01   p_joint 1.403509e-05

Joint ci ratio: 5.192129e-01	ci left: 1.057547e-05	ci right 1.818013e-05	k: 56	n:4000000
Cons ci ratio: 5.736962e-03	ci left: 1.042211e-01	ci right 1.048210e-01	k: 418083	n:4000000
KS ci ratio: 5.147174e-01	ci left: 1.079283e-05	ci right 1.846249e-05	k: 57	n:4000000
NRAS   4000000 perm   6306 sec   (634 perm/sec)   p_kst 1.425000e-05   p_cons 1.045207e-01   p_joint 1.400000e-05

Joint ci ratio: 5.192129e-01	ci left: 1.054909e-05	ci right 1.813479e-05	k: 56	n:4010000
Cons ci ratio: 5.729508e-03	ci left: 1.042311e-01	ci right 1.048303e-01	k: 419167	n:4010000
KS ci ratio: 5.147174e-01	ci left: 1.076591e-05	ci right 1.841645e-05	k: 57	n:4010000
NRAS   4010000 perm   6335 sec   (633 perm/sec)   p_kst 1.421446e-05   p_cons 1.045304e-01   p_joint 1.396509e-05

Joint ci ratio: 5.192129e-01	ci left: 1.052285e-05	ci right 1.808968e-05	k: 56	n:4020000
Cons ci ratio: 5.722083e-03	ci left: 1.042411e-01	ci right 1.048395e-01	k: 420251	n:4020000
KS ci ratio: 5.103367e-01	ci left: 1.095570e-05	ci right 1.865132e-05	k: 58	n:4020000
NRAS   4020000 perm   6366 sec   (632 perm/sec)   p_kst 1.442786e-05   p_cons 1.045400e-01   p_joint 1.393035e-05

Joint ci ratio: 5.192129e-01	ci left: 1.049674e-05	ci right 1.804479e-05	k: 56	n:4030000
Cons ci ratio: 5.715088e-03	ci left: 1.042379e-01	ci right 1.048356e-01	k: 421282	n:4030000
KS ci ratio: 5.103367e-01	ci left: 1.092851e-05	ci right 1.860504e-05	k: 58	n:4030000
NRAS   4030000 perm   6396 sec   (630 perm/sec)   p_kst 1.439206e-05   p_cons 1.045365e-01   p_joint 1.389578e-05

Joint ci ratio: 5.192130e-01	ci left: 1.047076e-05	ci right 1.800013e-05	k: 56	n:4040000
Cons ci ratio: 5.708217e-03	ci left: 1.042315e-01	ci right 1.048284e-01	k: 422300	n:4040000
KS ci ratio: 5.103367e-01	ci left: 1.090146e-05	ci right 1.855898e-05	k: 58	n:4040000
NRAS   4040000 perm   6425 sec   (629 perm/sec)   p_kst 1.435644e-05   p_cons 1.045297e-01   p_joint 1.386139e-05

Joint ci ratio: 5.192130e-01	ci left: 1.044490e-05	ci right 1.795568e-05	k: 56	n:4050000
Cons ci ratio: 5.701356e-03	ci left: 1.042257e-01	ci right 1.048218e-01	k: 423320	n:4050000
KS ci ratio: 5.103368e-01	ci left: 1.087454e-05	ci right 1.851316e-05	k: 58	n:4050000
NRAS   4050000 perm   6455 sec   (627 perm/sec)   p_kst 1.432099e-05   p_cons 1.045235e-01   p_joint 1.382716e-05

Joint ci ratio: 5.192130e-01	ci left: 1.041918e-05	ci right 1.791146e-05	k: 56	n:4060000
Cons ci ratio: 5.694077e-03	ci left: 1.042343e-01	ci right 1.048298e-01	k: 424399	n:4060000
KS ci ratio: 5.103368e-01	ci left: 1.084776e-05	ci right 1.846756e-05	k: 58	n:4060000
NRAS   4060000 perm   6486 sec   (626 perm/sec)   p_kst 1.428571e-05   p_cons 1.045318e-01   p_joint 1.379310e-05

Joint ci ratio: 5.192130e-01	ci left: 1.039358e-05	ci right 1.786745e-05	k: 56	n:4070000
Cons ci ratio: 5.687282e-03	ci left: 1.042280e-01	ci right 1.048227e-01	k: 425417	n:4070000
KS ci ratio: 5.103368e-01	ci left: 1.082111e-05	ci right 1.842219e-05	k: 58	n:4070000
NRAS   4070000 perm   6516 sec   (625 perm/sec)   p_kst 1.425061e-05   p_cons 1.045251e-01   p_joint 1.375921e-05

Joint ci ratio: 5.192130e-01	ci left: 1.036810e-05	ci right 1.782365e-05	k: 56	n:4080000
Cons ci ratio: 5.679871e-03	ci left: 1.042427e-01	ci right 1.048367e-01	k: 426521	n:4080000
KS ci ratio: 5.103368e-01	ci left: 1.079458e-05	ci right 1.837703e-05	k: 58	n:4080000
NRAS   4080000 perm   6546 sec   (623 perm/sec)   p_kst 1.421569e-05   p_cons 1.045395e-01   p_joint 1.372549e-05

Joint ci ratio: 5.192130e-01	ci left: 1.034275e-05	ci right 1.778008e-05	k: 56	n:4090000
Cons ci ratio: 5.672682e-03	ci left: 1.042511e-01	ci right 1.048444e-01	k: 427599	n:4090000
KS ci ratio: 5.103368e-01	ci left: 1.076819e-05	ci right 1.833210e-05	k: 58	n:4090000
NRAS   4090000 perm   6576 sec   (622 perm/sec)   p_kst 1.418093e-05   p_cons 1.045474e-01   p_joint 1.369193e-05

Joint ci ratio: 5.192130e-01	ci left: 1.031753e-05	ci right 1.773671e-05	k: 56	n:4100000
Cons ci ratio: 5.665933e-03	ci left: 1.042457e-01	ci right 1.048383e-01	k: 428621	n:4100000
KS ci ratio: 5.103368e-01	ci left: 1.074193e-05	ci right 1.828739e-05	k: 58	n:4100000
NRAS   4100000 perm   6606 sec   (621 perm/sec)   p_kst 1.414634e-05   p_cons 1.045417e-01   p_joint 1.365854e-05

Joint ci ratio: 5.192130e-01	ci left: 1.029242e-05	ci right 1.769355e-05	k: 56	n:4110000
Cons ci ratio: 5.659362e-03	ci left: 1.042353e-01	ci right 1.048271e-01	k: 429622	n:4110000
KS ci ratio: 5.103368e-01	ci left: 1.071579e-05	ci right 1.824289e-05	k: 58	n:4110000
NRAS   4110000 perm   6636 sec   (619 perm/sec)   p_kst 1.411192e-05   p_cons 1.045309e-01   p_joint 1.362530e-05

Joint ci ratio: 5.192130e-01	ci left: 1.026744e-05	ci right 1.765061e-05	k: 56	n:4120000
Cons ci ratio: 5.652764e-03	ci left: 1.042266e-01	ci right 1.048177e-01	k: 430630	n:4120000
KS ci ratio: 5.103368e-01	ci left: 1.068978e-05	ci right 1.819862e-05	k: 58	n:4120000
NRAS   4120000 perm   6666 sec   (618 perm/sec)   p_kst 1.407767e-05   p_cons 1.045218e-01   p_joint 1.359223e-05

Joint ci ratio: 5.192130e-01	ci left: 1.024258e-05	ci right 1.760787e-05	k: 56	n:4130000
Cons ci ratio: 5.645859e-03	ci left: 1.042288e-01	ci right 1.048192e-01	k: 431683	n:4130000
KS ci ratio: 5.103368e-01	ci left: 1.066390e-05	ci right 1.815455e-05	k: 58	n:4130000
NRAS   4130000 perm   6696 sec   (617 perm/sec)   p_kst 1.404358e-05   p_cons 1.045237e-01   p_joint 1.355932e-05

Joint ci ratio: 5.192130e-01	ci left: 1.021784e-05	ci right 1.756534e-05	k: 56	n:4140000
Cons ci ratio: 5.638718e-03	ci left: 1.042397e-01	ci right 1.048294e-01	k: 432772	n:4140000
KS ci ratio: 5.103368e-01	ci left: 1.063814e-05	ci right 1.811070e-05	k: 58	n:4140000
NRAS   4140000 perm   6727 sec   (615 perm/sec)   p_kst 1.400966e-05   p_cons 1.045343e-01   p_joint 1.352657e-05

Joint ci ratio: 5.192131e-01	ci left: 1.019322e-05	ci right 1.752301e-05	k: 56	n:4150000
Cons ci ratio: 5.631821e-03	ci left: 1.042434e-01	ci right 1.048324e-01	k: 433831	n:4150000
KS ci ratio: 5.103368e-01	ci left: 1.061251e-05	ci right 1.806706e-05	k: 58	n:4150000
NRAS   4150000 perm   6758 sec   (614 perm/sec)   p_kst 1.397590e-05   p_cons 1.045376e-01   p_joint 1.349398e-05

Joint ci ratio: 5.192131e-01	ci left: 1.016872e-05	ci right 1.748089e-05	k: 56	n:4160000
Cons ci ratio: 5.624971e-03	ci left: 1.042463e-01	ci right 1.048346e-01	k: 434887	n:4160000
KS ci ratio: 5.103369e-01	ci left: 1.058700e-05	ci right 1.802363e-05	k: 58	n:4160000
NRAS   4160000 perm   6789 sec   (613 perm/sec)   p_kst 1.394231e-05   p_cons 1.045401e-01   p_joint 1.346154e-05

Joint ci ratio: 5.192131e-01	ci left: 1.014433e-05	ci right 1.743897e-05	k: 56	n:4170000
Cons ci ratio: 5.618154e-03	ci left: 1.042489e-01	ci right 1.048365e-01	k: 435942	n:4170000
KS ci ratio: 5.103369e-01	ci left: 1.056161e-05	ci right 1.798041e-05	k: 58	n:4170000
NRAS   4170000 perm   6820 sec   (611 perm/sec)   p_kst 1.390887e-05   p_cons 1.045424e-01   p_joint 1.342926e-05

Joint ci ratio: 5.192131e-01	ci left: 1.012006e-05	ci right 1.739725e-05	k: 56	n:4180000
Cons ci ratio: 5.611662e-03	ci left: 1.042415e-01	ci right 1.048284e-01	k: 436955	n:4180000
KS ci ratio: 5.103369e-01	ci left: 1.053634e-05	ci right 1.793739e-05	k: 58	n:4180000
NRAS   4180000 perm   6851 sec   (610 perm/sec)   p_kst 1.387560e-05   p_cons 1.045347e-01   p_joint 1.339713e-05

Joint ci ratio: 5.192131e-01	ci left: 1.009591e-05	ci right 1.735573e-05	k: 56	n:4190000
Cons ci ratio: 5.605221e-03	ci left: 1.042332e-01	ci right 1.048193e-01	k: 437964	n:4190000
KS ci ratio: 5.103369e-01	ci left: 1.051119e-05	ci right 1.789458e-05	k: 58	n:4190000
NRAS   4190000 perm   6882 sec   (609 perm/sec)   p_kst 1.384248e-05   p_cons 1.045260e-01   p_joint 1.336516e-05

Joint ci ratio: 5.192131e-01	ci left: 1.007187e-05	ci right 1.731441e-05	k: 56	n:4200000
Cons ci ratio: 5.598589e-03	ci left: 1.042321e-01	ci right 1.048175e-01	k: 439003	n:4200000
KS ci ratio: 5.103369e-01	ci left: 1.048617e-05	ci right 1.785198e-05	k: 58	n:4200000
NRAS   4200000 perm   6912 sec   (608 perm/sec)   p_kst 1.380952e-05   p_cons 1.045245e-01   p_joint 1.333333e-05

Joint ci ratio: 5.192131e-01	ci left: 1.004795e-05	ci right 1.727328e-05	k: 56	n:4210000
Cons ci ratio: 5.591647e-03	ci left: 1.042421e-01	ci right 1.048268e-01	k: 440089	n:4210000
KS ci ratio: 5.103369e-01	ci left: 1.046126e-05	ci right 1.780957e-05	k: 58	n:4210000
NRAS   4210000 perm   6943 sec   (606 perm/sec)   p_kst 1.377672e-05   p_cons 1.045342e-01   p_joint 1.330166e-05

Joint ci ratio: 5.192131e-01	ci left: 1.002414e-05	ci right 1.723235e-05	k: 56	n:4220000
Cons ci ratio: 5.585133e-03	ci left: 1.042386e-01	ci right 1.048226e-01	k: 441118	n:4220000
KS ci ratio: 5.103369e-01	ci left: 1.043647e-05	ci right 1.776737e-05	k: 58	n:4220000
NRAS   4220000 perm   6974 sec   (605 perm/sec)   p_kst 1.374408e-05   p_cons 1.045303e-01   p_joint 1.327014e-05

Joint ci ratio: 5.285692e-01	ci left: 9.590194e-06	ci right 1.665677e-05	k: 54	n:4230000
Cons ci ratio: 5.578642e-03	ci left: 1.042351e-01	ci right 1.048184e-01	k: 442147	n:4230000
KS ci ratio: 5.103369e-01	ci left: 1.041180e-05	ci right 1.772537e-05	k: 58	n:4230000
NRAS   4230000 perm   7006 sec   (604 perm/sec)   p_kst 1.371158e-05   p_cons 1.045265e-01   p_joint 1.276596e-05

Joint ci ratio: 5.285692e-01	ci left: 9.567576e-06	ci right 1.661749e-05	k: 54	n:4240000
Cons ci ratio: 5.572195e-03	ci left: 1.042309e-01	ci right 1.048135e-01	k: 443173	n:4240000
KS ci ratio: 5.103369e-01	ci left: 1.038724e-05	ci right 1.768356e-05	k: 58	n:4240000
NRAS   4240000 perm   7038 sec   (602 perm/sec)   p_kst 1.367925e-05   p_cons 1.045219e-01   p_joint 1.273585e-05

Joint ci ratio: 5.238285e-01	ci left: 9.749080e-06	ci right 1.684469e-05	k: 55	n:4250000
Cons ci ratio: 5.565490e-03	ci left: 1.042361e-01	ci right 1.048181e-01	k: 444239	n:4250000
KS ci ratio: 5.060662e-01	ci left: 1.056791e-05	ci right 1.790719e-05	k: 59	n:4250000
NRAS   4250000 perm   7070 sec   (601 perm/sec)   p_kst 1.388235e-05   p_cons 1.045268e-01   p_joint 1.294118e-05

Joint ci ratio: 5.192131e-01	ci left: 9.930014e-06	ci right 1.707054e-05	k: 56	n:4260000
Cons ci ratio: 5.559130e-03	ci left: 1.042305e-01	ci right 1.048118e-01	k: 445259	n:4260000
KS ci ratio: 5.019009e-01	ci left: 1.074798e-05	ci right 1.812952e-05	k: 60	n:4260000
NRAS   4260000 perm   7102 sec   (600 perm/sec)   p_kst 1.408451e-05   p_cons 1.045209e-01   p_joint 1.314554e-05

Joint ci ratio: 5.192132e-01	ci left: 9.906759e-06	ci right 1.703057e-05	k: 56	n:4270000
Cons ci ratio: 5.552306e-03	ci left: 1.042413e-01	ci right 1.048220e-01	k: 446349	n:4270000
KS ci ratio: 5.019009e-01	ci left: 1.072281e-05	ci right 1.808706e-05	k: 60	n:4270000
NRAS   4270000 perm   7134 sec   (599 perm/sec)   p_kst 1.405152e-05   p_cons 1.045314e-01   p_joint 1.311475e-05

Joint ci ratio: 5.192132e-01	ci left: 9.883612e-06	ci right 1.699077e-05	k: 56	n:4280000
Cons ci ratio: 5.545320e-03	ci left: 1.042584e-01	ci right 1.048384e-01	k: 447466	n:4280000
KS ci ratio: 5.019009e-01	ci left: 1.069776e-05	ci right 1.804480e-05	k: 60	n:4280000
NRAS   4280000 perm   7165 sec   (597 perm/sec)   p_kst 1.401869e-05   p_cons 1.045481e-01   p_joint 1.308411e-05

Joint ci ratio: 5.192132e-01	ci left: 9.860574e-06	ci right 1.695117e-05	k: 56	n:4290000
Cons ci ratio: 5.538718e-03	ci left: 1.042633e-01	ci right 1.048426e-01	k: 448531	n:4290000
KS ci ratio: 5.019009e-01	ci left: 1.067282e-05	ci right 1.800274e-05	k: 60	n:4290000
NRAS   4290000 perm   7197 sec   (596 perm/sec)   p_kst 1.398601e-05   p_cons 1.045527e-01   p_joint 1.305361e-05

Joint ci ratio: 5.192132e-01	ci left: 9.837642e-06	ci right 1.691175e-05	k: 56	n:4300000
Cons ci ratio: 5.532305e-03	ci left: 1.042626e-01	ci right 1.048412e-01	k: 449572	n:4300000
KS ci ratio: 5.019010e-01	ci left: 1.064800e-05	ci right 1.796087e-05	k: 60	n:4300000
NRAS   4300000 perm   7228 sec   (595 perm/sec)   p_kst 1.395349e-05   p_cons 1.045516e-01   p_joint 1.302326e-05

Joint ci ratio: 5.192132e-01	ci left: 9.814817e-06	ci right 1.687251e-05	k: 56	n:4310000
Cons ci ratio: 5.525641e-03	ci left: 1.042711e-01	ci right 1.048491e-01	k: 450653	n:4310000
KS ci ratio: 5.019010e-01	ci left: 1.062329e-05	ci right 1.791920e-05	k: 60	n:4310000
NRAS   4310000 perm   7261 sec   (594 perm/sec)   p_kst 1.392111e-05   p_cons 1.045599e-01   p_joint 1.299304e-05

Joint ci ratio: 5.192132e-01	ci left: 9.792097e-06	ci right 1.683345e-05	k: 56	n:4320000
Cons ci ratio: 5.519423e-03	ci left: 1.042653e-01	ci right 1.048426e-01	k: 451672	n:4320000
KS ci ratio: 5.019010e-01	ci left: 1.059870e-05	ci right 1.787772e-05	k: 60	n:4320000
NRAS   4320000 perm   7293 sec   (592 perm/sec)   p_kst 1.388889e-05   p_cons 1.045537e-01   p_joint 1.296296e-05

Joint ci ratio: 5.192132e-01	ci left: 9.769483e-06	ci right 1.679458e-05	k: 56	n:4330000
Cons ci ratio: 5.512954e-03	ci left: 1.042688e-01	ci right 1.048454e-01	k: 452731	n:4330000
KS ci ratio: 5.019010e-01	ci left: 1.057422e-05	ci right 1.783643e-05	k: 60	n:4330000
NRAS   4330000 perm   7325 sec   (591 perm/sec)   p_kst 1.385681e-05   p_cons 1.045568e-01   p_joint 1.293303e-05

Joint ci ratio: 5.192132e-01	ci left: 9.746972e-06	ci right 1.675588e-05	k: 56	n:4340000
Cons ci ratio: 5.506691e-03	ci left: 1.042660e-01	ci right 1.048419e-01	k: 453763	n:4340000
KS ci ratio: 5.019010e-01	ci left: 1.054986e-05	ci right 1.779533e-05	k: 60	n:4340000
NRAS   4340000 perm   7357 sec   (590 perm/sec)   p_kst 1.382488e-05   p_cons 1.045537e-01   p_joint 1.290323e-05

Joint ci ratio: 5.192132e-01	ci left: 9.724566e-06	ci right 1.671736e-05	k: 56	n:4350000
Cons ci ratio: 5.500483e-03	ci left: 1.042620e-01	ci right 1.048373e-01	k: 454790	n:4350000
KS ci ratio: 5.019010e-01	ci left: 1.052561e-05	ci right 1.775442e-05	k: 60	n:4350000
NRAS   4350000 perm   7389 sec   (589 perm/sec)   p_kst 1.379310e-05   p_cons 1.045494e-01   p_joint 1.287356e-05

Joint ci ratio: 5.192132e-01	ci left: 9.702261e-06	ci right 1.667902e-05	k: 56	n:4360000
Cons ci ratio: 5.494485e-03	ci left: 1.042517e-01	ci right 1.048263e-01	k: 455789	n:4360000
KS ci ratio: 5.019010e-01	ci left: 1.050147e-05	ci right 1.771370e-05	k: 60	n:4360000
NRAS   4360000 perm   7421 sec   (588 perm/sec)   p_kst 1.376147e-05   p_cons 1.045388e-01   p_joint 1.284404e-05

Joint ci ratio: 5.192132e-01	ci left: 9.680059e-06	ci right 1.664085e-05	k: 56	n:4370000
Cons ci ratio: 5.488479e-03	ci left: 1.042424e-01	ci right 1.048163e-01	k: 456792	n:4370000
KS ci ratio: 5.019010e-01	ci left: 1.047743e-05	ci right 1.767317e-05	k: 60	n:4370000
NRAS   4370000 perm   7453 sec   (586 perm/sec)   p_kst 1.372998e-05   p_cons 1.045291e-01   p_joint 1.281465e-05

Joint ci ratio: 5.192132e-01	ci left: 9.657959e-06	ci right 1.660286e-05	k: 56	n:4380000
Cons ci ratio: 5.482312e-03	ci left: 1.042392e-01	ci right 1.048125e-01	k: 457822	n:4380000
KS ci ratio: 5.019010e-01	ci left: 1.045351e-05	ci right 1.763282e-05	k: 60	n:4380000
NRAS   4380000 perm   7485 sec   (585 perm/sec)   p_kst 1.369863e-05   p_cons 1.045256e-01   p_joint 1.278539e-05

Joint ci ratio: 5.192133e-01	ci left: 9.635959e-06	ci right 1.656504e-05	k: 56	n:4390000
Cons ci ratio: 5.476306e-03	ci left: 1.042313e-01	ci right 1.048039e-01	k: 458831	n:4390000
KS ci ratio: 5.019010e-01	ci left: 1.042970e-05	ci right 1.759265e-05	k: 60	n:4390000
NRAS   4390000 perm   7518 sec   (584 perm/sec)   p_kst 1.366743e-05   p_cons 1.045173e-01   p_joint 1.275626e-05

Joint ci ratio: 5.192133e-01	ci left: 9.614059e-06	ci right 1.652739e-05	k: 56	n:4400000
Cons ci ratio: 5.470333e-03	ci left: 1.042229e-01	ci right 1.047949e-01	k: 459838	n:4400000
KS ci ratio: 5.019010e-01	ci left: 1.040600e-05	ci right 1.755267e-05	k: 60	n:4400000
NRAS   4400000 perm   7551 sec   (583 perm/sec)   p_kst 1.363636e-05   p_cons 1.045086e-01   p_joint 1.272727e-05

Joint ci ratio: 5.192133e-01	ci left: 9.592258e-06	ci right 1.648991e-05	k: 56	n:4410000
Cons ci ratio: 5.464625e-03	ci left: 1.042063e-01	ci right 1.047775e-01	k: 460808	n:4410000
KS ci ratio: 5.019010e-01	ci left: 1.038240e-05	ci right 1.751287e-05	k: 60	n:4410000
NRAS   4410000 perm   7584 sec   (582 perm/sec)   p_kst 1.360544e-05   p_cons 1.044916e-01   p_joint 1.269841e-05

Joint ci ratio: 5.192133e-01	ci left: 9.570556e-06	ci right 1.645261e-05	k: 56	n:4420000
Cons ci ratio: 5.458650e-03	ci left: 1.041994e-01	ci right 1.047699e-01	k: 461821	n:4420000
KS ci ratio: 5.019010e-01	ci left: 1.035891e-05	ci right 1.747324e-05	k: 60	n:4420000
NRAS   4420000 perm   7616 sec   (580 perm/sec)   p_kst 1.357466e-05   p_cons 1.044844e-01   p_joint 1.266968e-05

Joint ci ratio: 5.192133e-01	ci left: 9.548952e-06	ci right 1.641547e-05	k: 56	n:4430000
Cons ci ratio: 5.452603e-03	ci left: 1.041957e-01	ci right 1.047656e-01	k: 462848	n:4430000
KS ci ratio: 5.019011e-01	ci left: 1.033553e-05	ci right 1.743380e-05	k: 60	n:4430000
NRAS   4430000 perm   7650 sec   (579 perm/sec)   p_kst 1.354402e-05   p_cons 1.044804e-01   p_joint 1.264108e-05

Joint ci ratio: 5.192133e-01	ci left: 9.527446e-06	ci right 1.637850e-05	k: 56	n:4440000
Cons ci ratio: 5.446268e-03	ci left: 1.042026e-01	ci right 1.047718e-01	k: 463922	n:4440000
KS ci ratio: 5.019011e-01	ci left: 1.031225e-05	ci right 1.739454e-05	k: 60	n:4440000
NRAS   4440000 perm   7683 sec   (578 perm/sec)   p_kst 1.351351e-05   p_cons 1.044869e-01   p_joint 1.261261e-05

Joint ci ratio: 5.192133e-01	ci left: 9.506036e-06	ci right 1.634169e-05	k: 56	n:4450000
Cons ci ratio: 5.440170e-03	ci left: 1.042020e-01	ci right 1.047706e-01	k: 464963	n:4450000
KS ci ratio: 5.019011e-01	ci left: 1.028908e-05	ci right 1.735545e-05	k: 60	n:4450000
NRAS   4450000 perm   7716 sec   (577 perm/sec)   p_kst 1.348315e-05   p_cons 1.044861e-01   p_joint 1.258427e-05

Joint ci ratio: 5.192133e-01	ci left: 9.484722e-06	ci right 1.630505e-05	k: 56	n:4460000
Cons ci ratio: 5.433852e-03	ci left: 1.042097e-01	ci right 1.047778e-01	k: 466041	n:4460000
KS ci ratio: 5.019011e-01	ci left: 1.026601e-05	ci right 1.731653e-05	k: 60	n:4460000
NRAS   4460000 perm   7749 sec   (576 perm/sec)   p_kst 1.345291e-05   p_cons 1.044935e-01   p_joint 1.255605e-05

Joint ci ratio: 5.192133e-01	ci left: 9.463503e-06	ci right 1.626857e-05	k: 56	n:4470000
Cons ci ratio: 5.427413e-03	ci left: 1.042224e-01	ci right 1.047898e-01	k: 467141	n:4470000
KS ci ratio: 5.019011e-01	ci left: 1.024304e-05	ci right 1.727780e-05	k: 60	n:4470000
NRAS   4470000 perm   7782 sec   (574 perm/sec)   p_kst 1.342282e-05   p_cons 1.045058e-01   p_joint 1.252796e-05

Joint ci ratio: 5.192133e-01	ci left: 9.442379e-06	ci right 1.623226e-05	k: 56	n:4480000
Cons ci ratio: 5.421056e-03	ci left: 1.042329e-01	ci right 1.047997e-01	k: 468232	n:4480000
KS ci ratio: 5.019011e-01	ci left: 1.022018e-05	ci right 1.723923e-05	k: 60	n:4480000
NRAS   4480000 perm   7815 sec   (573 perm/sec)   p_kst 1.339286e-05   p_cons 1.045161e-01   p_joint 1.250000e-05

Joint ci ratio: 5.192133e-01	ci left: 9.421349e-06	ci right 1.619611e-05	k: 56	n:4490000
Cons ci ratio: 5.415004e-03	ci left: 1.042337e-01	ci right 1.047998e-01	k: 469279	n:4490000
KS ci ratio: 5.019011e-01	ci left: 1.019741e-05	ci right 1.720083e-05	k: 60	n:4490000
NRAS   4490000 perm   7849 sec   (572 perm/sec)   p_kst 1.336303e-05   p_cons 1.045165e-01   p_joint 1.247216e-05

Joint ci ratio: 5.192133e-01	ci left: 9.400413e-06	ci right 1.616012e-05	k: 56	n:4500000
Cons ci ratio: 5.409049e-03	ci left: 1.042317e-01	ci right 1.047972e-01	k: 470314	n:4500000
KS ci ratio: 5.019011e-01	ci left: 1.017475e-05	ci right 1.716261e-05	k: 60	n:4500000
NRAS   4500000 perm   7882 sec   (571 perm/sec)   p_kst 1.333333e-05   p_cons 1.045142e-01   p_joint 1.244444e-05

Joint ci ratio: 5.192133e-01	ci left: 9.379569e-06	ci right 1.612428e-05	k: 56	n:4510000
Cons ci ratio: 5.403120e-03	ci left: 1.042296e-01	ci right 1.047945e-01	k: 471348	n:4510000
KS ci ratio: 5.019011e-01	ci left: 1.015219e-05	ci right 1.712456e-05	k: 60	n:4510000
NRAS   4510000 perm   7916 sec   (570 perm/sec)   p_kst 1.330377e-05   p_cons 1.045118e-01   p_joint 1.241685e-05

Joint ci ratio: 5.192134e-01	ci left: 9.358818e-06	ci right 1.608861e-05	k: 56	n:4520000
Cons ci ratio: 5.397045e-03	ci left: 1.042332e-01	ci right 1.047974e-01	k: 472408	n:4520000
KS ci ratio: 5.019011e-01	ci left: 1.012973e-05	ci right 1.708667e-05	k: 60	n:4520000
NRAS   4520000 perm   7949 sec   (569 perm/sec)   p_kst 1.327434e-05   p_cons 1.045150e-01   p_joint 1.238938e-05

Joint ci ratio: 5.334412e-01	ci left: 8.763949e-06	ci right 1.530357e-05	k: 53	n:4530000
Cons ci ratio: 5.390641e-03	ci left: 1.042489e-01	ci right 1.048126e-01	k: 473523	n:4530000
KS ci ratio: 4.978370e-01	ci left: 1.030027e-05	ci right 1.729733e-05	k: 61	n:4530000
NRAS   4530000 perm   7984 sec   (567 perm/sec)   p_kst 1.346578e-05   p_cons 1.045305e-01   p_joint 1.169978e-05

Joint ci ratio: 5.334412e-01	ci left: 8.744646e-06	ci right 1.526986e-05	k: 53	n:4540000
Cons ci ratio: 5.384665e-03	ci left: 1.042504e-01	ci right 1.048135e-01	k: 474574	n:4540000
KS ci ratio: 4.978370e-01	ci left: 1.027758e-05	ci right 1.725923e-05	k: 61	n:4540000
NRAS   4540000 perm   8018 sec   (566 perm/sec)   p_kst 1.343612e-05   p_cons 1.045317e-01   p_joint 1.167401e-05

Joint ci ratio: 5.334412e-01	ci left: 8.725427e-06	ci right 1.523630e-05	k: 53	n:4550000
Cons ci ratio: 5.378374e-03	ci left: 1.042636e-01	ci right 1.048261e-01	k: 475678	n:4550000
KS ci ratio: 4.978371e-01	ci left: 1.025500e-05	ci right 1.722130e-05	k: 61	n:4550000
NRAS   4550000 perm   8052 sec   (565 perm/sec)   p_kst 1.340659e-05   p_cons 1.045446e-01   p_joint 1.164835e-05

Joint ci ratio: 5.334412e-01	ci left: 8.706292e-06	ci right 1.520289e-05	k: 53	n:4560000
Cons ci ratio: 5.372740e-03	ci left: 1.042546e-01	ci right 1.048165e-01	k: 476681	n:4560000
KS ci ratio: 4.978371e-01	ci left: 1.023251e-05	ci right 1.718353e-05	k: 61	n:4560000
NRAS   4560000 perm   8086 sec   (564 perm/sec)   p_kst 1.337719e-05   p_cons 1.045353e-01   p_joint 1.162281e-05

Joint ci ratio: 5.489067e-01	ci left: 8.120572e-06	ci right 1.442421e-05	k: 50	n:4570000
Cons ci ratio: 5.367118e-03	ci left: 1.042459e-01	ci right 1.048071e-01	k: 477685	n:4570000
KS ci ratio: 4.978371e-01	ci left: 1.021012e-05	ci right 1.714593e-05	k: 61	n:4570000
NRAS   4570000 perm   8119 sec   (563 perm/sec)   p_kst 1.334792e-05   p_cons 1.045263e-01   p_joint 1.094092e-05

Joint ci ratio: 5.489067e-01	ci left: 8.102841e-06	ci right 1.439272e-05	k: 50	n:4580000
Cons ci ratio: 5.361339e-03	ci left: 1.042433e-01	ci right 1.048039e-01	k: 478717	n:4580000
KS ci ratio: 4.978371e-01	ci left: 1.018782e-05	ci right 1.710849e-05	k: 61	n:4580000
NRAS   4580000 perm   8153 sec   (562 perm/sec)   p_kst 1.331878e-05   p_cons 1.045234e-01   p_joint 1.091703e-05

Joint ci ratio: 5.489067e-01	ci left: 8.085188e-06	ci right 1.436136e-05	k: 50	n:4590000
Cons ci ratio: 5.355590e-03	ci left: 1.042403e-01	ci right 1.048003e-01	k: 479747	n:4590000
KS ci ratio: 4.978371e-01	ci left: 1.016563e-05	ci right 1.707122e-05	k: 61	n:4590000
NRAS   4590000 perm   8187 sec   (561 perm/sec)   p_kst 1.328976e-05   p_cons 1.045200e-01   p_joint 1.089325e-05

Joint ci ratio: 5.489067e-01	ci left: 8.067611e-06	ci right 1.433014e-05	k: 50	n:4600000
Cons ci ratio: 5.349624e-03	ci left: 1.042456e-01	ci right 1.048049e-01	k: 480815	n:4600000
KS ci ratio: 4.978371e-01	ci left: 1.014353e-05	ci right 1.703411e-05	k: 61	n:4600000
NRAS   4600000 perm   8222 sec   (560 perm/sec)   p_kst 1.326087e-05   p_cons 1.045250e-01   p_joint 1.086957e-05

Joint ci ratio: 5.489067e-01	ci left: 8.050111e-06	ci right 1.429906e-05	k: 50	n:4610000
Cons ci ratio: 5.343864e-03	ci left: 1.042443e-01	ci right 1.048031e-01	k: 481853	n:4610000
KS ci ratio: 4.978371e-01	ci left: 1.012153e-05	ci right 1.699716e-05	k: 61	n:4610000
NRAS   4610000 perm   8255 sec   (558 perm/sec)   p_kst 1.323210e-05   p_cons 1.045234e-01   p_joint 1.084599e-05

Joint ci ratio: 5.599970e-01	ci left: 7.660488e-06	ci right 1.377509e-05	k: 48	n:4620000
Cons ci ratio: 5.337807e-03	ci left: 1.042541e-01	ci right 1.048122e-01	k: 482942	n:4620000
KS ci ratio: 4.978371e-01	ci left: 1.009962e-05	ci right 1.696037e-05	k: 61	n:4620000
NRAS   4620000 perm   8289 sec   (557 perm/sec)   p_kst 1.320346e-05   p_cons 1.045329e-01   p_joint 1.038961e-05

Joint ci ratio: 5.599970e-01	ci left: 7.643943e-06	ci right 1.374534e-05	k: 48	n:4630000
Cons ci ratio: 5.332023e-03	ci left: 1.042549e-01	ci right 1.048125e-01	k: 483990	n:4630000
KS ci ratio: 4.978371e-01	ci left: 1.007780e-05	ci right 1.692374e-05	k: 61	n:4630000
NRAS   4630000 perm   8323 sec   (556 perm/sec)   p_kst 1.317495e-05   p_cons 1.045335e-01   p_joint 1.036717e-05

Joint ci ratio: 5.543687e-01	ci left: 7.812611e-06	ci right 1.396131e-05	k: 49	n:4640000
Cons ci ratio: 5.326534e-03	ci left: 1.042461e-01	ci right 1.048031e-01	k: 484993	n:4640000
KS ci ratio: 4.938702e-01	ci left: 1.024464e-05	ci right 1.712954e-05	k: 62	n:4640000
NRAS   4640000 perm   8357 sec   (555 perm/sec)   p_kst 1.336207e-05   p_cons 1.045244e-01   p_joint 1.056034e-05

Joint ci ratio: 5.543687e-01	ci left: 7.795810e-06	ci right 1.393129e-05	k: 49	n:4650000
Cons ci ratio: 5.320676e-03	ci left: 1.042509e-01	ci right 1.048072e-01	k: 486059	n:4650000
KS ci ratio: 4.938702e-01	ci left: 1.022261e-05	ci right 1.709270e-05	k: 62	n:4650000
NRAS   4650000 perm   8392 sec   (554 perm/sec)   p_kst 1.333333e-05   p_cons 1.045288e-01   p_joint 1.053763e-05

Joint ci ratio: 5.489067e-01	ci left: 7.963736e-06	ci right 1.414563e-05	k: 50	n:4660000
Cons ci ratio: 5.315307e-03	ci left: 1.042391e-01	ci right 1.047949e-01	k: 487048	n:4660000
KS ci ratio: 4.938702e-01	ci left: 1.020067e-05	ci right 1.705602e-05	k: 62	n:4660000
NRAS   4660000 perm   8426 sec   (553 perm/sec)   p_kst 1.330472e-05   p_cons 1.045167e-01   p_joint 1.072961e-05

Joint ci ratio: 5.489067e-01	ci left: 7.946683e-06	ci right 1.411534e-05	k: 50	n:4670000
Cons ci ratio: 5.309438e-03	ci left: 1.042456e-01	ci right 1.048007e-01	k: 488122	n:4670000
KS ci ratio: 4.938702e-01	ci left: 1.017883e-05	ci right 1.701950e-05	k: 62	n:4670000
NRAS   4670000 perm   8461 sec   (552 perm/sec)   p_kst 1.327623e-05   p_cons 1.045229e-01   p_joint 1.070664e-05

Joint ci ratio: 5.489067e-01	ci left: 7.929703e-06	ci right 1.408518e-05	k: 50	n:4680000
Cons ci ratio: 5.304012e-03	ci left: 1.042371e-01	ci right 1.047916e-01	k: 489126	n:4680000
KS ci ratio: 4.938702e-01	ci left: 1.015708e-05	ci right 1.698313e-05	k: 62	n:4680000
NRAS   4680000 perm   8497 sec   (551 perm/sec)   p_kst 1.324786e-05   p_cons 1.045141e-01   p_joint 1.068376e-05

Joint ci ratio: 5.489067e-01	ci left: 7.912795e-06	ci right 1.405515e-05	k: 50	n:4690000
Cons ci ratio: 5.298301e-03	ci left: 1.042393e-01	ci right 1.047932e-01	k: 490180	n:4690000
KS ci ratio: 4.938702e-01	ci left: 1.013542e-05	ci right 1.694692e-05	k: 62	n:4690000
NRAS   4690000 perm   8532 sec   (550 perm/sec)   p_kst 1.321962e-05   p_cons 1.045160e-01   p_joint 1.066098e-05

Joint ci ratio: 5.489068e-01	ci left: 7.895960e-06	ci right 1.402525e-05	k: 50	n:4700000
Cons ci ratio: 5.292855e-03	ci left: 1.042327e-01	ci right 1.047861e-01	k: 491193	n:4700000
KS ci ratio: 4.938702e-01	ci left: 1.011385e-05	ci right 1.691086e-05	k: 62	n:4700000
NRAS   4700000 perm   8566 sec   (549 perm/sec)   p_kst 1.319149e-05   p_cons 1.045091e-01   p_joint 1.063830e-05

Joint ci ratio: 5.489068e-01	ci left: 7.879195e-06	ci right 1.399547e-05	k: 50	n:4710000
Cons ci ratio: 5.287132e-03	ci left: 1.042366e-01	ci right 1.047894e-01	k: 492255	n:4710000
KS ci ratio: 4.938702e-01	ci left: 1.009238e-05	ci right 1.687496e-05	k: 62	n:4710000
NRAS   4710000 perm   8600 sec   (548 perm/sec)   p_kst 1.316348e-05   p_cons 1.045127e-01   p_joint 1.061571e-05

Joint ci ratio: 5.489068e-01	ci left: 7.862502e-06	ci right 1.396582e-05	k: 50	n:4720000
Cons ci ratio: 5.281828e-03	ci left: 1.042263e-01	ci right 1.047784e-01	k: 493250	n:4720000
KS ci ratio: 4.938702e-01	ci left: 1.007100e-05	ci right 1.683921e-05	k: 62	n:4720000
NRAS   4720000 perm   8635 sec   (547 perm/sec)   p_kst 1.313559e-05   p_cons 1.045021e-01   p_joint 1.059322e-05

Joint ci ratio: 5.489068e-01	ci left: 7.845880e-06	ci right 1.393629e-05	k: 50	n:4730000
Cons ci ratio: 5.276171e-03	ci left: 1.042291e-01	ci right 1.047807e-01	k: 494307	n:4730000
KS ci ratio: 4.938702e-01	ci left: 1.004971e-05	ci right 1.680361e-05	k: 62	n:4730000
NRAS   4730000 perm   8670 sec   (546 perm/sec)   p_kst 1.310782e-05   p_cons 1.045047e-01   p_joint 1.057082e-05

Joint ci ratio: 5.489068e-01	ci left: 7.829327e-06	ci right 1.390689e-05	k: 50	n:4740000
Cons ci ratio: 5.270400e-03	ci left: 1.042365e-01	ci right 1.047876e-01	k: 495386	n:4740000
KS ci ratio: 4.938702e-01	ci left: 1.002850e-05	ci right 1.676816e-05	k: 62	n:4740000
NRAS   4740000 perm   8705 sec   (544 perm/sec)   p_kst 1.308017e-05   p_cons 1.045118e-01   p_joint 1.054852e-05

Joint ci ratio: 5.489068e-01	ci left: 7.812844e-06	ci right 1.387761e-05	k: 50	n:4750000
Cons ci ratio: 5.265010e-03	ci left: 1.042311e-01	ci right 1.047816e-01	k: 496404	n:4750000
KS ci ratio: 4.938703e-01	ci left: 1.000739e-05	ci right 1.673285e-05	k: 62	n:4750000
NRAS   4750000 perm   8741 sec   (543 perm/sec)   p_kst 1.305263e-05   p_cons 1.045061e-01   p_joint 1.052632e-05

Joint ci ratio: 5.489068e-01	ci left: 7.796431e-06	ci right 1.384846e-05	k: 50	n:4760000
Cons ci ratio: 5.259507e-03	ci left: 1.042304e-01	ci right 1.047802e-01	k: 497444	n:4760000
KS ci ratio: 4.938703e-01	ci left: 9.986368e-06	ci right 1.669770e-05	k: 62	n:4760000
NRAS   4760000 perm   8776 sec   (542 perm/sec)   p_kst 1.302521e-05   p_cons 1.045050e-01   p_joint 1.050420e-05

Joint ci ratio: 5.489068e-01	ci left: 7.780086e-06	ci right 1.381942e-05	k: 50	n:4770000
Cons ci ratio: 5.253862e-03	ci left: 1.042352e-01	ci right 1.047845e-01	k: 498511	n:4770000
KS ci ratio: 4.938703e-01	ci left: 9.965432e-06	ci right 1.666270e-05	k: 62	n:4770000
NRAS   4770000 perm   8811 sec   (541 perm/sec)   p_kst 1.299790e-05   p_cons 1.045096e-01   p_joint 1.048218e-05

Joint ci ratio: 5.489068e-01	ci left: 7.763810e-06	ci right 1.379051e-05	k: 50	n:4780000
Cons ci ratio: 5.248240e-03	ci left: 1.042399e-01	ci right 1.047886e-01	k: 499577	n:4780000
KS ci ratio: 4.938703e-01	ci left: 9.944584e-06	ci right 1.662784e-05	k: 62	n:4780000
NRAS   4780000 perm   8847 sec   (540 perm/sec)   p_kst 1.297071e-05   p_cons 1.045140e-01   p_joint 1.046025e-05

Joint ci ratio: 5.489068e-01	ci left: 7.747601e-06	ci right 1.376172e-05	k: 50	n:4790000
Cons ci ratio: 5.242532e-03	ci left: 1.042483e-01	ci right 1.047964e-01	k: 500661	n:4790000
KS ci ratio: 4.938703e-01	ci left: 9.923823e-06	ci right 1.659312e-05	k: 62	n:4790000
NRAS   4790000 perm   8882 sec   (539 perm/sec)   p_kst 1.294363e-05   p_cons 1.045221e-01   p_joint 1.043841e-05

Joint ci ratio: 5.489068e-01	ci left: 7.731460e-06	ci right 1.373305e-05	k: 50	n:4800000
Cons ci ratio: 5.236638e-03	ci left: 1.042639e-01	ci right 1.048116e-01	k: 501780	n:4800000
KS ci ratio: 4.938703e-01	ci left: 9.903148e-06	ci right 1.655855e-05	k: 62	n:4800000
NRAS   4800000 perm   8918 sec   (538 perm/sec)   p_kst 1.291667e-05   p_cons 1.045375e-01   p_joint 1.041667e-05

Joint ci ratio: 5.436032e-01	ci left: 7.894573e-06	ci right 1.394085e-05	k: 51	n:4810000
Cons ci ratio: 5.231270e-03	ci left: 1.042614e-01	ci right 1.048085e-01	k: 502812	n:4810000
KS ci ratio: 4.938703e-01	ci left: 9.882559e-06	ci right 1.652413e-05	k: 62	n:4810000
NRAS   4810000 perm   8954 sec   (537 perm/sec)   p_kst 1.288981e-05   p_cons 1.045347e-01   p_joint 1.060291e-05

Joint ci ratio: 5.436032e-01	ci left: 7.878194e-06	ci right 1.391192e-05	k: 51	n:4820000
Cons ci ratio: 5.225535e-03	ci left: 1.042726e-01	ci right 1.048191e-01	k: 503910	n:4820000
KS ci ratio: 4.938703e-01	ci left: 9.862056e-06	ci right 1.648985e-05	k: 62	n:4820000
NRAS   4820000 perm   8990 sec   (536 perm/sec)   p_kst 1.286307e-05   p_cons 1.045456e-01   p_joint 1.058091e-05

Joint ci ratio: 5.436032e-01	ci left: 7.861883e-06	ci right 1.388312e-05	k: 51	n:4830000
Cons ci ratio: 5.220195e-03	ci left: 1.042703e-01	ci right 1.048163e-01	k: 504943	n:4830000
KS ci ratio: 4.938703e-01	ci left: 9.841638e-06	ci right 1.645571e-05	k: 62	n:4830000
NRAS   4830000 perm   9026 sec   (535 perm/sec)   p_kst 1.283644e-05   p_cons 1.045431e-01   p_joint 1.055901e-05

Joint ci ratio: 5.436032e-01	ci left: 7.845640e-06	ci right 1.385444e-05	k: 51	n:4840000
Cons ci ratio: 5.214940e-03	ci left: 1.042656e-01	ci right 1.048109e-01	k: 505964	n:4840000
KS ci ratio: 4.938703e-01	ci left: 9.821304e-06	ci right 1.642171e-05	k: 62	n:4840000
NRAS   4840000 perm   9062 sec   (534 perm/sec)   p_kst 1.280992e-05   p_cons 1.045380e-01   p_joint 1.053719e-05

Joint ci ratio: 5.436032e-01	ci left: 7.829463e-06	ci right 1.382587e-05	k: 51	n:4850000
Cons ci ratio: 5.209770e-03	ci left: 1.042584e-01	ci right 1.048031e-01	k: 506973	n:4850000
KS ci ratio: 4.938703e-01	ci left: 9.801054e-06	ci right 1.638785e-05	k: 62	n:4850000
NRAS   4850000 perm   9098 sec   (533 perm/sec)   p_kst 1.278351e-05   p_cons 1.045305e-01   p_joint 1.051546e-05

Joint ci ratio: 5.436032e-01	ci left: 7.813353e-06	ci right 1.379742e-05	k: 51	n:4860000
Cons ci ratio: 5.204804e-03	ci left: 1.042444e-01	ci right 1.047886e-01	k: 507949	n:4860000
KS ci ratio: 4.938703e-01	ci left: 9.780887e-06	ci right 1.635413e-05	k: 62	n:4860000
NRAS   4860000 perm   9134 sec   (532 perm/sec)   p_kst 1.275720e-05   p_cons 1.045163e-01   p_joint 1.049383e-05

Joint ci ratio: 5.436032e-01	ci left: 7.797309e-06	ci right 1.376909e-05	k: 51	n:4870000
Cons ci ratio: 5.199310e-03	ci left: 1.042500e-01	ci right 1.047936e-01	k: 509020	n:4870000
KS ci ratio: 4.938703e-01	ci left: 9.760803e-06	ci right 1.632055e-05	k: 62	n:4870000
NRAS   4870000 perm   9170 sec   (531 perm/sec)   p_kst 1.273101e-05   p_cons 1.045216e-01   p_joint 1.047228e-05

Joint ci ratio: 5.384504e-01	ci left: 7.958225e-06	ci right 1.397356e-05	k: 52	n:4880000
Cons ci ratio: 5.193771e-03	ci left: 1.042578e-01	ci right 1.048009e-01	k: 510102	n:4880000
KS ci ratio: 4.938703e-01	ci left: 9.740801e-06	ci right 1.628710e-05	k: 62	n:4880000
NRAS   4880000 perm   9207 sec   (530 perm/sec)   p_kst 1.270492e-05   p_cons 1.045291e-01   p_joint 1.065574e-05

Joint ci ratio: 5.384504e-01	ci left: 7.941950e-06	ci right 1.394498e-05	k: 52	n:4890000
Cons ci ratio: 5.188334e-03	ci left: 1.042625e-01	ci right 1.048050e-01	k: 511169	n:4890000
KS ci ratio: 4.938703e-01	ci left: 9.720881e-06	ci right 1.625380e-05	k: 62	n:4890000
NRAS   4890000 perm   9244 sec   (529 perm/sec)   p_kst 1.267894e-05   p_cons 1.045335e-01   p_joint 1.063395e-05

Joint ci ratio: 5.384504e-01	ci left: 7.925742e-06	ci right 1.391652e-05	k: 52	n:4900000
Cons ci ratio: 5.182729e-03	ci left: 1.042739e-01	ci right 1.048159e-01	k: 512269	n:4900000
KS ci ratio: 4.938704e-01	ci left: 9.701043e-06	ci right 1.622062e-05	k: 62	n:4900000
NRAS   4900000 perm   9280 sec   (528 perm/sec)   p_kst 1.265306e-05   p_cons 1.045447e-01   p_joint 1.061224e-05

Joint ci ratio: 5.384504e-01	ci left: 7.909600e-06	ci right 1.388818e-05	k: 52	n:4910000
Cons ci ratio: 5.177406e-03	ci left: 1.042757e-01	ci right 1.048172e-01	k: 513322	n:4910000
KS ci ratio: 4.938704e-01	ci left: 9.681285e-06	ci right 1.618759e-05	k: 62	n:4910000
NRAS   4910000 perm   9316 sec   (527 perm/sec)   p_kst 1.262729e-05   p_cons 1.045462e-01   p_joint 1.059063e-05

Joint ci ratio: 5.599972e-01	ci left: 7.193385e-06	ci right 1.293515e-05	k: 48	n:4920000
Cons ci ratio: 5.172167e-03	ci left: 1.042751e-01	ci right 1.048160e-01	k: 514363	n:4920000
KS ci ratio: 4.938704e-01	ci left: 9.661608e-06	ci right 1.615469e-05	k: 62	n:4920000
NRAS   4920000 perm   9353 sec   (526 perm/sec)   p_kst 1.260163e-05   p_cons 1.045453e-01   p_joint 9.756098e-06

Joint ci ratio: 5.599972e-01	ci left: 7.178794e-06	ci right 1.290891e-05	k: 48	n:4930000
Cons ci ratio: 5.166904e-03	ci left: 1.042759e-01	ci right 1.048163e-01	k: 515411	n:4930000
KS ci ratio: 4.938704e-01	ci left: 9.642010e-06	ci right 1.612192e-05	k: 62	n:4930000
NRAS   4930000 perm   9389 sec   (525 perm/sec)   p_kst 1.257606e-05   p_cons 1.045458e-01   p_joint 9.736308e-06

Joint ci ratio: 5.599972e-01	ci left: 7.164262e-06	ci right 1.288278e-05	k: 48	n:4940000
Cons ci ratio: 5.162126e-03	ci left: 1.042597e-01	ci right 1.047995e-01	k: 516375	n:4940000
KS ci ratio: 4.938704e-01	ci left: 9.622492e-06	ci right 1.608928e-05	k: 62	n:4940000
NRAS   4940000 perm   9425 sec   (524 perm/sec)   p_kst 1.255061e-05   p_cons 1.045294e-01   p_joint 9.716599e-06

Joint ci ratio: 5.599972e-01	ci left: 7.149788e-06	ci right 1.285675e-05	k: 48	n:4950000
Cons ci ratio: 5.156961e-03	ci left: 1.042581e-01	ci right 1.047973e-01	k: 517411	n:4950000
KS ci ratio: 4.938704e-01	ci left: 9.603052e-06	ci right 1.605678e-05	k: 62	n:4950000
NRAS   4950000 perm   9462 sec   (523 perm/sec)   p_kst 1.252525e-05   p_cons 1.045275e-01   p_joint 9.696970e-06

Joint ci ratio: 5.599972e-01	ci left: 7.135373e-06	ci right 1.283083e-05	k: 48	n:4960000
Cons ci ratio: 5.151678e-03	ci left: 1.042613e-01	ci right 1.048000e-01	k: 518471	n:4960000
KS ci ratio: 4.938704e-01	ci left: 9.583691e-06	ci right 1.602441e-05	k: 62	n:4960000
NRAS   4960000 perm   9499 sec   (522 perm/sec)   p_kst 1.250000e-05   p_cons 1.045304e-01   p_joint 9.677419e-06

Joint ci ratio: 5.599972e-01	ci left: 7.121017e-06	ci right 1.280502e-05	k: 48	n:4970000
Cons ci ratio: 5.146229e-03	ci left: 1.042712e-01	ci right 1.048094e-01	k: 519564	n:4970000
KS ci ratio: 4.938704e-01	ci left: 9.564408e-06	ci right 1.599217e-05	k: 62	n:4970000
NRAS   4970000 perm   9535 sec   (521 perm/sec)   p_kst 1.247485e-05   p_cons 1.045400e-01   p_joint 9.657948e-06

Joint ci ratio: 5.599972e-01	ci left: 7.106717e-06	ci right 1.277930e-05	k: 48	n:4980000
Cons ci ratio: 5.141200e-03	ci left: 1.042664e-01	ci right 1.048040e-01	k: 520584	n:4980000
KS ci ratio: 4.938704e-01	ci left: 9.545203e-06	ci right 1.596005e-05	k: 62	n:4980000
NRAS   4980000 perm   9572 sec   (520 perm/sec)   p_kst 1.244980e-05   p_cons 1.045349e-01   p_joint 9.638554e-06

Joint ci ratio: 5.599972e-01	ci left: 7.092475e-06	ci right 1.275369e-05	k: 48	n:4990000
Cons ci ratio: 5.136323e-03	ci left: 1.042565e-01	ci right 1.047936e-01	k: 521579	n:4990000
KS ci ratio: 4.938704e-01	ci left: 9.526074e-06	ci right 1.592807e-05	k: 62	n:4990000
NRAS   4990000 perm   9610 sec   (519 perm/sec)   p_kst 1.242485e-05   p_cons 1.045248e-01   p_joint 9.619238e-06

Joint ci ratio: 4.467220e-01	ci left: 1.197589e-05	ci right 1.902503e-05	k: 76	n:5000000
Cons ci ratio: 5.334229e-03	ci left: 9.721995e-02	ci right 9.774012e-02	k: 487399	n:5000000
KS ci ratio: 4.938704e-01	ci left: 9.507022e-06	ci right 1.589621e-05	k: 62	n:5000000
NRAS   5000000 perm   9647 sec   (518 perm/sec)   p_kst 1.240000e-05   p_cons 9.747980e-02   p_joint 1.520000e-05

Outputting figure to mutsig2_images.part000000000117/NRAS.20_586_5000000_1.24e-05_0.09748_1.52e-05.png
                gene_name: NRAS
               theta_stop: 0.49 
                    nperm: 5000000 
                     p_ks: 1.24e-05 
        ci_ks_bounds_left: 9.51e-06 
       ci_ks_bounds_right: 1.59e-05 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.098 
                  p_joint: 1.52e-05 
     ci_joint_bounds_left: 1.20e-05 
    ci_joint_bounds_right: 1.90e-05 

Current progress: 3 percent done.
NRXN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.556918e-02	ci left: 2.545889e-01	ci right 2.719492e-01	k: 2632	n:10000
Cons ci ratio: 1.308937e-01	ci left: 7.688883e-02	ci right 8.775595e-02	k: 822	n:10000
KS ci ratio: 2.430514e-02	ci left: 7.134081e-01	ci right 7.310622e-01	k: 7223	n:10000
NRXN3   10000 perm   2 sec   (5051 perm/sec)   p_kst 7.223000e-01   p_cons 8.220000e-02   p_joint 2.632000e-01

Joint ci ratio: 3.666333e-02	ci left: 3.569783e-01	ci right 3.703613e-01	k: 7273	n:20000
Cons ci ratio: 9.097100e-02	ci left: 8.107257e-02	ci right 8.884859e-02	k: 1698	n:20000
KS ci ratio: 1.742031e-02	ci left: 7.105499e-01	ci right 7.230870e-01	k: 14337	n:20000
NRXN3   20000 perm   4 sec   (4594 perm/sec)   p_kst 7.168500e-01   p_cons 8.490000e-02   p_joint 3.636500e-01

Outputting figure to mutsig2_images.part000000000117/NRXN3.18_3600_20000_0.71685_0.0849_0.36365.png
                gene_name: NRXN3
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 5 percent done.
NRAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.207657e-02	ci left: 5.892161e-01	ci right 6.085262e-01	k: 5989	n:10000
Cons ci ratio: 5.849639e-02	ci left: 3.007434e-01	ci right 3.189675e-01	k: 3098	n:10000
KS ci ratio: 4.046880e-02	ci left: 4.741611e-01	ci right 4.938483e-01	k: 4840	n:10000
NRAP   10000 perm   2 sec   (4519 perm/sec)   p_kst 4.840000e-01   p_cons 3.098000e-01   p_joint 5.989000e-01

Outputting figure to mutsig2_images.part000000000117/NRAP.16_5361_10000_0.484_0.3098_0.5989.png
                gene_name: NRAP
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 7 percent done.
NRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.478738e-02	ci left: 1.685812e-01	ci right 1.836080e-01	k: 1760	n:10000
Cons ci ratio: 5.612854e-03	ci left: 9.770621e-01	ci right 9.826535e-01	k: 9800	n:10000
KS ci ratio: 1.257984e-01	ci left: 8.290659e-02	ci right 9.413446e-02	k: 884	n:10000
NRG1   10000 perm   2 sec   (4603 perm/sec)   p_kst 8.840000e-02   p_cons 9.800000e-01   p_joint 1.760000e-01

Joint ci ratio: 6.587906e-02	ci left: 1.454227e-01	ci right 1.553792e-01	k: 3007	n:20000
Cons ci ratio: 3.974423e-03	ci left: 9.778588e-01	ci right 9.818000e-01	k: 19598	n:20000
KS ci ratio: 9.024730e-02	ci left: 8.229672e-02	ci right 9.012407e-02	k: 1723	n:20000
NRG1   20000 perm   5 sec   (4224 perm/sec)   p_kst 8.615000e-02   p_cons 9.799000e-01   p_joint 1.503500e-01

Outputting figure to mutsig2_images.part000000000117/NRG1.15_3696_20000_0.08615_0.9799_0.15035.png
                gene_name: NRG1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 9 percent done.
NSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.052912e-02	ci left: 2.276066e-01	ci right 2.443474e-01	k: 2359	n:10000
Cons ci ratio: 5.117355e-02	ci left: 3.602279e-01	ci right 3.792481e-01	k: 3697	n:10000
KS ci ratio: 1.174650e-01	ci left: 9.428457e-02	ci right 1.061495e-01	k: 1001	n:10000
NSD1   10000 perm   2 sec   (4320 perm/sec)   p_kst 1.001000e-01   p_cons 3.697000e-01   p_joint 2.359000e-01

Joint ci ratio: 6.562248e-02	ci left: 1.464090e-01	ci right 1.563926e-01	k: 3027	n:20000
Cons ci ratio: 3.626277e-02	ci left: 3.620580e-01	ci right 3.754802e-01	k: 7375	n:20000
KS ci ratio: 8.329303e-02	ci left: 9.553217e-02	ci right 1.038846e-01	k: 1993	n:20000
NSD1   20000 perm   5 sec   (3949 perm/sec)   p_kst 9.965000e-02   p_cons 3.687500e-01   p_joint 1.513500e-01

Outputting figure to mutsig2_images.part000000000117/NSD1.14_8179_20000_0.09965_0.36875_0.15135.png
                gene_name: NSD1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.100 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 10 percent done.
NRK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.738618e-02	ci left: 5.137554e-01	ci right 5.334308e-01	k: 5236	n:10000
Cons ci ratio: 1.553508e-02	ci left: 8.574316e-01	ci right 8.709555e-01	k: 8643	n:10000
KS ci ratio: 4.959722e-02	ci left: 3.748505e-01	ci right 3.940169e-01	k: 3844	n:10000
NRK   10000 perm   2 sec   (4792 perm/sec)   p_kst 3.844000e-01   p_cons 8.643000e-01   p_joint 5.236000e-01

Outputting figure to mutsig2_images.part000000000117/NRK.13_4865_10000_0.3844_0.8643_0.5236.png
                gene_name: NRK
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 12 percent done.
NR3C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.591170e-02	ci left: 6.867776e-01	ci right 7.049082e-01	k: 6959	n:10000
Cons ci ratio: 4.879990e-02	ci left: 3.825137e-01	ci right 4.017492e-01	k: 3921	n:10000
KS ci ratio: 3.417529e-02	ci left: 5.583228e-01	ci right 5.778375e-01	k: 5681	n:10000
NR3C2   10000 perm   2 sec   (5422 perm/sec)   p_kst 5.681000e-01   p_cons 3.921000e-01   p_joint 6.959000e-01

Outputting figure to mutsig2_images.part000000000117/NR3C2.10_2987_10000_0.5681_0.3921_0.6959.png
                gene_name: NR3C2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 14 percent done.
NRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.283688e-02	ci left: 7.379539e-01	ci right 7.551022e-01	k: 7466	n:10000
KS ci ratio: 8.205735e-03	ci left: 9.539874e-01	ci right 9.619430e-01	k: 9581	n:10000
NRP2   10000 perm   2 sec   (5128 perm/sec)   p_kst 9.581000e-01   p_cons 7.466000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NRP2.10_3176_10000_0.9581_0.7466_1.png
                gene_name: NRP2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
NT5C1B
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.785907e-02	ci left: 2.416357e-01	ci right 2.587100e-01	k: 2501	n:10000
Cons ci ratio: 1.376601e-01	ci left: 6.981515e-02	ci right 8.023404e-02	k: 749	n:10000
KS ci ratio: 2.355520e-02	ci left: 7.259294e-01	ci right 7.433338e-01	k: 7347	n:10000
NT5C1B   10000 perm   2 sec   (6053 perm/sec)   p_kst 7.347000e-01   p_cons 7.490000e-02   p_joint 2.501000e-01

Joint ci ratio: 4.975483e-02	ci left: 2.309219e-01	ci right 2.427547e-01	k: 4736	n:20000
Cons ci ratio: 1.003771e-01	ci left: 6.728287e-02	ci right 7.444250e-02	k: 1416	n:20000
KS ci ratio: 1.673106e-02	ci left: 7.267599e-01	ci right 7.390723e-01	k: 14659	n:20000
NT5C1B   20000 perm   4 sec   (5553 perm/sec)   p_kst 7.329500e-01   p_cons 7.080000e-02   p_joint 2.368000e-01

Joint ci ratio: 3.992016e-02	ci left: 2.383537e-01	ci right 2.480961e-01	k: 7296	n:30000
Cons ci ratio: 7.915750e-02	ci left: 7.256766e-02	ci right 7.858151e-02	k: 2266	n:30000
KS ci ratio: 1.365336e-02	ci left: 7.281225e-01	ci right 7.381656e-01	k: 21995	n:30000
NT5C1B   30000 perm   6 sec   (5301 perm/sec)   p_kst 7.331667e-01   p_cons 7.553333e-02   p_joint 2.432000e-01

Outputting figure to mutsig2_images.part000000000117/NT5C1B.8_1873_30000_0.73317_0.075533_0.2432.png
                gene_name: NT5C1B
               theta_stop: 0.079 
                    nperm: 30000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 17 percent done.
NR4A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.846905e-02	ci left: 3.009417e-01	ci right 3.191691e-01	k: 3100	n:10000
Cons ci ratio: 1.105409e-01	ci left: 1.054923e-01	ci right 1.179349e-01	k: 1116	n:10000
KS ci ratio: 4.857548e-02	ci left: 3.847036e-01	ci right 4.039580e-01	k: 3943	n:10000
NR4A2   10000 perm   2 sec   (6214 perm/sec)   p_kst 3.943000e-01   p_cons 1.116000e-01   p_joint 3.100000e-01

Joint ci ratio: 4.980304e-02	ci left: 2.305749e-01	ci right 2.424018e-01	k: 4729	n:20000
Cons ci ratio: 8.829953e-02	ci left: 8.572561e-02	ci right 9.369414e-02	k: 1793	n:20000
KS ci ratio: 3.397678e-02	ci left: 3.927518e-01	ci right 4.063774e-01	k: 7991	n:20000
NR4A2   20000 perm   4 sec   (5614 perm/sec)   p_kst 3.995500e-01   p_cons 8.965000e-02   p_joint 2.364500e-01

Outputting figure to mutsig2_images.part000000000117/NR4A2.7_1821_20000_0.39955_0.08965_0.23645.png
                gene_name: NR4A2
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 19 percent done.
NRCAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.145409e-02	ci left: 9.159518e-01	ci right 9.266012e-01	k: 9214	n:10000
KS ci ratio: 1.743974e-02	ci left: 8.273742e-01	ci right 8.420303e-01	k: 8348	n:10000
NRCAM   10000 perm   2 sec   (5389 perm/sec)   p_kst 8.348000e-01   p_cons 9.214000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NRCAM.7_4065_10000_0.8348_0.9214_1.png
                gene_name: NRCAM
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
NRG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.764019e-02	ci left: 1.319816e-01	ci right 1.456295e-01	k: 1387	n:10000
Cons ci ratio: 1.481806e-01	ci left: 6.053496e-02	ci right 7.032006e-02	k: 653	n:10000
KS ci ratio: 7.605201e-02	ci left: 2.018551e-01	ci right 2.179143e-01	k: 2098	n:10000
NRG3   10000 perm   2 sec   (5197 perm/sec)   p_kst 2.098000e-01   p_cons 6.530000e-02   p_joint 1.387000e-01

Joint ci ratio: 7.655473e-02	ci left: 1.114456e-01	ci right 1.203665e-01	k: 2317	n:20000
Cons ci ratio: 1.042709e-01	ci left: 6.254854e-02	ci right 6.947828e-02	k: 1319	n:20000
KS ci ratio: 5.308996e-02	ci left: 2.084815e-01	ci right 2.199018e-01	k: 4283	n:20000
NRG3   20000 perm   4 sec   (4890 perm/sec)   p_kst 2.141500e-01   p_cons 6.595000e-02   p_joint 1.158500e-01

Joint ci ratio: 5.907090e-02	ci left: 1.242061e-01	ci right 1.317995e-01	k: 3839	n:30000
Cons ci ratio: 8.110916e-02	ci left: 6.929611e-02	ci right 7.518706e-02	k: 2166	n:30000
KS ci ratio: 4.361582e-02	ci left: 2.074855e-01	ci right 2.167703e-01	k: 6363	n:30000
NRG3   30000 perm   6 sec   (4758 perm/sec)   p_kst 2.121000e-01   p_cons 7.220000e-02   p_joint 1.279667e-01

Outputting figure to mutsig2_images.part000000000117/NRG3.7_2371_30000_0.2121_0.0722_0.12797.png
                gene_name: NRG3
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 22 percent done.
NR1D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.989677e-02	ci left: 6.226615e-01	ci right 6.416614e-01	k: 6322	n:10000
Cons ci ratio: 4.667687e-02	ci left: 4.038243e-01	ci right 4.232261e-01	k: 4135	n:10000
KS ci ratio: 3.634289e-02	ci left: 5.278683e-01	ci right 5.475097e-01	k: 5377	n:10000
NR1D2   10000 perm   2 sec   (6001 perm/sec)   p_kst 5.377000e-01   p_cons 4.135000e-01   p_joint 6.322000e-01

Outputting figure to mutsig2_images.part000000000117/NR1D2.6_1772_10000_0.5377_0.4135_0.6322.png
                gene_name: NR1D2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 24 percent done.
NRG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.842359e-01	ci left: 8.324320e-03	ci right 1.236857e-02	k: 102	n:10000
Cons ci ratio: 1.322110e-01	ci left: 7.543425e-02	ci right 8.621143e-02	k: 807	n:10000
KS ci ratio: 2.554752e-01	ci left: 2.005779e-02	ci right 2.602453e-02	k: 229	n:10000
NRG2   10000 perm   2 sec   (5753 perm/sec)   p_kst 2.290000e-02   p_cons 8.070000e-02   p_joint 1.020000e-02

Joint ci ratio: 1.885661e-01	ci left: 1.915306e-02	ci right 2.318783e-02	k: 422	n:20000
Cons ci ratio: 8.967923e-02	ci left: 8.327621e-02	ci right 9.114429e-02	k: 1743	n:20000
KS ci ratio: 1.775177e-01	ci left: 2.168415e-02	ci right 2.595584e-02	k: 475	n:20000
NRG2   20000 perm   4 sec   (5287 perm/sec)   p_kst 2.375000e-02   p_cons 8.715000e-02   p_joint 2.110000e-02

Joint ci ratio: 1.645439e-01	ci left: 1.703726e-02	ci right 2.012364e-02	k: 556	n:30000
Cons ci ratio: 7.406384e-02	ci left: 8.222831e-02	ci right 8.858559e-02	k: 2561	n:30000
KS ci ratio: 1.447362e-01	ci left: 2.213689e-02	ci right 2.562282e-02	k: 715	n:30000
NRG2   30000 perm   6 sec   (5076 perm/sec)   p_kst 2.383333e-02   p_cons 8.536667e-02   p_joint 1.853333e-02

Joint ci ratio: 1.558218e-01	ci left: 1.436027e-02	ci right 1.681079e-02	k: 622	n:40000
Cons ci ratio: 6.266834e-02	ci left: 8.630090e-02	ci right 9.190892e-02	k: 3563	n:40000
KS ci ratio: 1.249885e-01	ci left: 2.249804e-02	ci right 2.552160e-02	k: 959	n:40000
NRG2   40000 perm   8 sec   (4949 perm/sec)   p_kst 2.397500e-02   p_cons 8.907500e-02   p_joint 1.555000e-02

Joint ci ratio: 1.296308e-01	ci left: 1.679461e-02	ci right 1.914183e-02	k: 897	n:50000
Cons ci ratio: 5.569627e-02	ci left: 8.762389e-02	ci right 9.266381e-02	k: 4506	n:50000
KS ci ratio: 1.117934e-01	ci left: 2.265673e-02	ci right 2.535892e-02	k: 1199	n:50000
NRG2   50000 perm   10 sec   (4840 perm/sec)   p_kst 2.398000e-02   p_cons 9.012000e-02   p_joint 1.794000e-02

Joint ci ratio: 1.200261e-01	ci left: 1.641733e-02	ci right 1.852971e-02	k: 1047	n:60000
Cons ci ratio: 5.108478e-02	ci left: 8.707915e-02	ci right 9.166066e-02	k: 5361	n:60000
KS ci ratio: 1.029727e-01	ci left: 2.236763e-02	ci right 2.481208e-02	k: 1414	n:60000
NRG2   60000 perm   13 sec   (4719 perm/sec)   p_kst 2.356667e-02   p_cons 8.935000e-02   p_joint 1.745000e-02

Joint ci ratio: 1.181906e-01	ci left: 1.455626e-02	ci right 1.639850e-02	k: 1082	n:70000
Cons ci ratio: 4.736051e-02	ci left: 8.702774e-02	ci right 9.126353e-02	k: 6239	n:70000
KS ci ratio: 9.521129e-02	ci left: 2.251602e-02	ci right 2.478085e-02	k: 1654	n:70000
NRG2   70000 perm   15 sec   (4627 perm/sec)   p_kst 2.362857e-02   p_cons 8.912857e-02   p_joint 1.545714e-02

Joint ci ratio: 1.155268e-01	ci left: 1.336725e-02	ci right 1.501826e-02	k: 1134	n:80000
Cons ci ratio: 4.419103e-02	ci left: 8.756766e-02	ci right 9.153717e-02	k: 7163	n:80000
KS ci ratio: 8.888005e-02	ci left: 2.268144e-02	ci right 2.480329e-02	k: 1898	n:80000
NRG2   80000 perm   18 sec   (4530 perm/sec)   p_kst 2.372500e-02   p_cons 8.953750e-02   p_joint 1.417500e-02

Joint ci ratio: 9.939378e-02	ci left: 1.614380e-02	ci right 1.784309e-02	k: 1528	n:90000
Cons ci ratio: 4.165947e-02	ci left: 8.769773e-02	ci right 9.143988e-02	k: 8060	n:90000
KS ci ratio: 8.478545e-02	ci left: 2.221546e-02	ci right 2.419322e-02	k: 2087	n:90000
NRG2   90000 perm   20 sec   (4454 perm/sec)   p_kst 2.318889e-02   p_cons 8.955556e-02   p_joint 1.697778e-02

Outputting figure to mutsig2_images.part000000000117/NRG2.6_2684_90000_0.023189_0.089556_0.016978.png
                gene_name: NRG2
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.018 

Current progress: 26 percent done.
NRIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.874410e-01	ci left: 3.796147e-02	ci right 4.590818e-02	k: 418	n:10000
Cons ci ratio: 5.144913e-02	ci left: 3.577420e-01	ci right 3.767354e-01	k: 3672	n:10000
KS ci ratio: 2.765105e-01	ci left: 1.697368e-02	ci right 2.251108e-02	k: 196	n:10000
NRIP1   10000 perm   2 sec   (5245 perm/sec)   p_kst 1.960000e-02   p_cons 3.672000e-01   p_joint 4.180000e-02

Joint ci ratio: 1.053865e-01	ci left: 6.128043e-02	ci right 6.814678e-02	k: 1293	n:20000
Cons ci ratio: 3.622386e-02	ci left: 3.625560e-01	ci right 3.759820e-01	k: 7385	n:20000
KS ci ratio: 1.923153e-01	ci left: 1.839051e-02	ci right 2.235066e-02	k: 406	n:20000
NRIP1   20000 perm   4 sec   (4853 perm/sec)   p_kst 2.030000e-02   p_cons 3.692500e-01   p_joint 6.465000e-02

Joint ci ratio: 1.091778e-01	ci left: 3.894635e-02	ci right 4.347638e-02	k: 1235	n:30000
Cons ci ratio: 2.963384e-02	ci left: 3.629046e-01	ci right 3.738542e-01	k: 11051	n:30000
KS ci ratio: 1.564386e-01	ci left: 1.889435e-02	ci right 2.213278e-02	k: 614	n:30000
NRIP1   30000 perm   6 sec   (4668 perm/sec)   p_kst 2.046667e-02   p_cons 3.683667e-01   p_joint 4.116667e-02

Joint ci ratio: 9.801416e-02	ci left: 3.656235e-02	ci right 4.035503e-02	k: 1537	n:40000
Cons ci ratio: 2.671179e-02	ci left: 3.452745e-01	ci right 3.546473e-01	k: 13998	n:40000
KS ci ratio: 1.365898e-01	ci left: 1.879541e-02	ci right 2.157486e-02	k: 806	n:40000
NRIP1   40000 perm   9 sec   (4530 perm/sec)   p_kst 2.015000e-02   p_cons 3.499500e-01   p_joint 3.842500e-02

Joint ci ratio: 9.474882e-02	ci left: 3.152953e-02	ci right 3.468498e-02	k: 1654	n:50000
Cons ci ratio: 2.337642e-02	ci left: 3.557311e-01	ci right 3.641652e-01	k: 17997	n:50000
KS ci ratio: 1.240500e-01	ci left: 1.836412e-02	ci right 2.081210e-02	k: 978	n:50000
NRIP1   50000 perm   11 sec   (4454 perm/sec)   p_kst 1.956000e-02   p_cons 3.599400e-01   p_joint 3.308000e-02

Joint ci ratio: 9.516680e-02	ci left: 2.618975e-02	ci right 2.882289e-02	k: 1649	n:60000
Cons ci ratio: 2.134475e-02	ci left: 3.559915e-01	ci right 3.636887e-01	k: 21590	n:60000
KS ci ratio: 1.104365e-01	ci left: 1.942971e-02	ci right 2.171699e-02	k: 1233	n:60000
NRIP1   60000 perm   14 sec   (4366 perm/sec)   p_kst 2.055000e-02   p_cons 3.598333e-01   p_joint 2.748333e-02

Joint ci ratio: 9.662594e-02	ci left: 2.186034e-02	ci right 2.409373e-02	k: 1607	n:70000
Cons ci ratio: 1.976844e-02	ci left: 3.561150e-01	ci right 3.632394e-01	k: 25177	n:70000
KS ci ratio: 1.023412e-01	ci left: 1.947696e-02	ci right 2.159161e-02	k: 1436	n:70000
NRIP1   70000 perm   16 sec   (4282 perm/sec)   p_kst 2.051429e-02   p_cons 3.596714e-01   p_joint 2.295714e-02

Joint ci ratio: 8.897609e-02	ci left: 2.263252e-02	ci right 2.475221e-02	k: 1894	n:80000
Cons ci ratio: 1.841259e-02	ci left: 3.583193e-01	ci right 3.649907e-01	k: 28932	n:80000
KS ci ratio: 9.673721e-02	ci left: 1.913868e-02	ci right 2.109634e-02	k: 1608	n:80000
NRIP1   80000 perm   19 sec   (4190 perm/sec)   p_kst 2.010000e-02   p_cons 3.616500e-01   p_joint 2.367500e-02

Outputting figure to mutsig2_images.part000000000117/NRIP1.6_3481_80000_0.0201_0.36165_0.023675.png
                gene_name: NRIP1
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 28 percent done.
NRXN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
Cons ci ratio: 6.975563e-02	ci left: 2.315572e-01	ci right 2.483945e-01	k: 2399	n:10000
KS ci ratio: 4.962703e-01	ci left: 4.669135e-03	ci right 7.828899e-03	k: 61	n:10000
NRXN2   10000 perm   2 sec   (5032 perm/sec)   p_kst 6.100000e-03   p_cons 2.399000e-01   p_joint 1.190000e-02

Joint ci ratio: 1.991674e-01	ci left: 1.710552e-02	ci right 2.093613e-02	k: 379	n:20000
Cons ci ratio: 4.912317e-02	ci left: 2.355318e-01	ci right 2.474435e-01	k: 4829	n:20000
KS ci ratio: 3.413601e-01	ci left: 5.433506e-03	ci right 7.713515e-03	k: 130	n:20000
NRXN2   20000 perm   4 sec   (4578 perm/sec)   p_kst 6.500000e-03   p_cons 2.414500e-01   p_joint 1.895000e-02

Joint ci ratio: 1.966889e-01	ci left: 1.178058e-02	ci right 1.438165e-02	k: 391	n:30000
Cons ci ratio: 3.949821e-02	ci left: 2.422603e-01	ci right 2.520554e-01	k: 7414	n:30000
KS ci ratio: 2.857593e-01	ci left: 5.343177e-03	ci right 7.154445e-03	k: 186	n:30000
NRXN2   30000 perm   7 sec   (4400 perm/sec)   p_kst 6.200000e-03   p_cons 2.471333e-01   p_joint 1.303333e-02

Joint ci ratio: 1.962579e-01	ci left: 8.905409e-03	ci right 1.086673e-02	k: 394	n:40000
Cons ci ratio: 3.401154e-02	ci left: 2.450415e-01	ci right 2.535449e-01	k: 9971	n:40000
KS ci ratio: 2.418460e-01	ci left: 5.735981e-03	ci right 7.336924e-03	k: 260	n:40000
NRXN2   40000 perm   9 sec   (4286 perm/sec)   p_kst 6.500000e-03   p_cons 2.492750e-01   p_joint 9.850000e-03

Joint ci ratio: 1.455463e-01	ci left: 1.325834e-02	ci right 1.535860e-02	k: 714	n:50000
Cons ci ratio: 3.119783e-02	ci left: 2.362219e-01	ci right 2.437283e-01	k: 11998	n:50000
KS ci ratio: 2.167325e-01	ci left: 5.795477e-03	ci right 7.222727e-03	k: 324	n:50000
NRXN2   50000 perm   12 sec   (4194 perm/sec)   p_kst 6.480000e-03   p_cons 2.399600e-01   p_joint 1.428000e-02

Joint ci ratio: 1.369723e-01	ci left: 1.254355e-02	ci right 1.440395e-02	k: 807	n:60000
Cons ci ratio: 2.851192e-02	ci left: 2.361392e-01	ci right 2.429860e-01	k: 14373	n:60000
KS ci ratio: 1.960856e-01	ci left: 5.967726e-03	ci right 7.280681e-03	k: 396	n:60000
NRXN2   60000 perm   15 sec   (4107 perm/sec)   p_kst 6.600000e-03   p_cons 2.395500e-01   p_joint 1.345000e-02

Joint ci ratio: 1.500384e-01	ci left: 8.932165e-03	ci right 1.039463e-02	k: 675	n:70000
Cons ci ratio: 2.635628e-02	ci left: 2.369536e-01	ci right 2.432965e-01	k: 16808	n:70000
KS ci ratio: 1.805940e-01	ci left: 6.081755e-03	ci right 7.302534e-03	k: 467	n:70000
NRXN2   70000 perm   17 sec   (4036 perm/sec)   p_kst 6.671429e-03   p_cons 2.401143e-01   p_joint 9.642857e-03

Joint ci ratio: 1.417038e-01	ci left: 8.803211e-03	ci right 1.015772e-02	k: 757	n:80000
Cons ci ratio: 2.458944e-02	ci left: 2.381142e-01	ci right 2.440546e-01	k: 19286	n:80000
KS ci ratio: 1.720099e-01	ci left: 5.895018e-03	ci right 7.016225e-03	k: 515	n:80000
NRXN2   80000 perm   20 sec   (3973 perm/sec)   p_kst 6.437500e-03   p_cons 2.410750e-01   p_joint 9.462500e-03

Joint ci ratio: 1.208490e-01	ci left: 1.085677e-02	ci right 1.226387e-02	k: 1039	n:90000
Cons ci ratio: 2.315143e-02	ci left: 2.387841e-01	ci right 2.443881e-01	k: 21742	n:90000
KS ci ratio: 1.614048e-01	ci left: 5.985391e-03	ci right 7.046793e-03	k: 585	n:90000
NRXN2   90000 perm   23 sec   (3909 perm/sec)   p_kst 6.500000e-03   p_cons 2.415778e-01   p_joint 1.154444e-02

Joint ci ratio: 1.218706e-01	ci left: 9.615570e-03	ci right 1.087308e-02	k: 1023	n:100000
Cons ci ratio: 2.199512e-02	ci left: 2.384015e-01	ci right 2.437135e-01	k: 24105	n:100000
KS ci ratio: 1.544542e-01	ci left: 5.905497e-03	ci right 6.903457e-03	k: 639	n:100000
NRXN2   100000 perm   26 sec   (3848 perm/sec)   p_kst 6.390000e-03   p_cons 2.410500e-01   p_joint 1.023000e-02

Joint ci ratio: 1.237085e-01	ci left: 8.485579e-03	ci right 9.613262e-03	k: 994	n:110000
Cons ci ratio: 2.095883e-02	ci left: 2.387466e-01	ci right 2.438125e-01	k: 26540	n:110000
KS ci ratio: 1.471612e-01	ci left: 5.937260e-03	ci right 6.889045e-03	k: 704	n:110000
NRXN2   110000 perm   29 sec   (3793 perm/sec)   p_kst 6.400000e-03   p_cons 2.412727e-01   p_joint 9.036364e-03

Joint ci ratio: 1.055737e-01	ci left: 1.075832e-02	ci right 1.196547e-02	k: 1362	n:120000
Cons ci ratio: 2.006555e-02	ci left: 2.388729e-01	ci right 2.437229e-01	k: 28955	n:120000
KS ci ratio: 1.409046e-01	ci left: 5.956611e-03	ci right 6.867489e-03	k: 768	n:120000
NRXN2   120000 perm   32 sec   (3745 perm/sec)   p_kst 6.400000e-03   p_cons 2.412917e-01   p_joint 1.135000e-02

Joint ci ratio: 1.103396e-01	ci left: 9.084546e-03	ci right 1.015288e-02	k: 1249	n:130000
Cons ci ratio: 1.925167e-02	ci left: 2.394744e-01	ci right 2.441371e-01	k: 31434	n:130000
KS ci ratio: 1.348955e-01	ci left: 6.018313e-03	ci right 6.896228e-03	k: 838	n:130000
NRXN2   130000 perm   35 sec   (3700 perm/sec)   p_kst 6.446154e-03   p_cons 2.418000e-01   p_joint 9.607692e-03

Joint ci ratio: 9.263683e-02	ci left: 1.204320e-02	ci right 1.321997e-02	k: 1767	n:140000
Cons ci ratio: 1.856297e-02	ci left: 2.393311e-01	ci right 2.438225e-01	k: 33820	n:140000
KS ci ratio: 1.286721e-01	ci left: 6.161781e-03	ci right 7.015991e-03	k: 921	n:140000
NRXN2   140000 perm   38 sec   (3658 perm/sec)   p_kst 6.578571e-03   p_cons 2.415714e-01   p_joint 1.262143e-02

Joint ci ratio: 9.230722e-02	ci left: 1.133131e-02	ci right 1.243435e-02	k: 1781	n:150000
Cons ci ratio: 1.794000e-02	ci left: 2.392760e-01	ci right 2.436140e-01	k: 36216	n:150000
KS ci ratio: 1.234848e-01	ci left: 6.261075e-03	ci right 7.091500e-03	k: 1000	n:150000
NRXN2   150000 perm   42 sec   (3612 perm/sec)   p_kst 6.666667e-03   p_cons 2.414400e-01   p_joint 1.187333e-02

Joint ci ratio: 9.215903e-02	ci left: 1.066567e-02	ci right 1.170216e-02	k: 1788	n:160000
Cons ci ratio: 1.734413e-02	ci left: 2.398967e-01	ci right 2.441001e-01	k: 38719	n:160000
KS ci ratio: 1.199450e-01	ci left: 6.233335e-03	ci right 7.034700e-03	k: 1060	n:160000
NRXN2   160000 perm   45 sec   (3568 perm/sec)   p_kst 6.625000e-03   p_cons 2.419938e-01   p_joint 1.117500e-02

Joint ci ratio: 9.271488e-02	ci left: 9.923175e-03	ci right 1.089363e-02	k: 1768	n:170000
Cons ci ratio: 1.684005e-02	ci left: 2.396605e-01	ci right 2.437365e-01	k: 41088	n:170000
KS ci ratio: 1.162244e-01	ci left: 6.260568e-03	ci right 7.038753e-03	k: 1129	n:170000
NRXN2   170000 perm   48 sec   (3508 perm/sec)   p_kst 6.641176e-03   p_cons 2.416941e-01   p_joint 1.040000e-02

Joint ci ratio: 9.242590e-02	ci left: 9.436901e-03	ci right 1.035677e-02	k: 1780	n:180000
Cons ci ratio: 1.637601e-02	ci left: 2.394854e-01	ci right 2.434451e-01	k: 43463	n:180000
KS ci ratio: 1.136922e-01	ci left: 6.187932e-03	ci right 6.939204e-03	k: 1180	n:180000
NRXN2   180000 perm   52 sec   (3461 perm/sec)   p_kst 6.555556e-03   p_cons 2.414611e-01   p_joint 9.888889e-03

Joint ci ratio: 9.365197e-02	ci left: 8.708737e-03	ci right 9.569498e-03	k: 1735	n:190000
Cons ci ratio: 1.593047e-02	ci left: 2.397396e-01	ci right 2.435946e-01	k: 45916	n:190000
KS ci ratio: 1.107319e-01	ci left: 6.189640e-03	ci right 6.920275e-03	k: 1244	n:190000
NRXN2   190000 perm   56 sec   (3418 perm/sec)   p_kst 6.547368e-03   p_cons 2.416632e-01   p_joint 9.131579e-03

Joint ci ratio: 9.378262e-02	ci left: 8.253678e-03	ci right 9.070659e-03	k: 1731	n:200000
Cons ci ratio: 1.552470e-02	ci left: 2.398449e-01	ci right 2.436025e-01	k: 48344	n:200000
KS ci ratio: 1.083671e-01	ci left: 6.147615e-03	ci right 6.856802e-03	k: 1299	n:200000
NRXN2   200000 perm   59 sec   (3379 perm/sec)   p_kst 6.495000e-03   p_cons 2.417200e-01   p_joint 8.655000e-03

Joint ci ratio: 9.210151e-02	ci left: 8.158305e-03	ci right 8.950588e-03	k: 1795	n:210000
Cons ci ratio: 1.515888e-02	ci left: 2.396897e-01	ci right 2.433556e-01	k: 50719	n:210000
KS ci ratio: 1.060294e-01	ci left: 6.123653e-03	ci right 6.813886e-03	k: 1357	n:210000
NRXN2   210000 perm   63 sec   (3339 perm/sec)   p_kst 6.461905e-03   p_cons 2.415190e-01   p_joint 8.547619e-03

Joint ci ratio: 9.306462e-02	ci left: 7.627528e-03	ci right 8.376431e-03	k: 1759	n:220000
Cons ci ratio: 1.481812e-02	ci left: 2.395404e-01	ci right 2.431209e-01	k: 53092	n:220000
KS ci ratio: 1.036161e-01	ci left: 6.128588e-03	ci right 6.802696e-03	k: 1421	n:220000
NRXN2   220000 perm   67 sec   (3301 perm/sec)   p_kst 6.459091e-03   p_cons 2.413273e-01   p_joint 7.995455e-03

Joint ci ratio: 8.086733e-02	ci left: 9.703891e-03	ci right 1.052592e-02	k: 2325	n:230000
Cons ci ratio: 1.449384e-02	ci left: 2.395438e-01	ci right 2.430453e-01	k: 55497	n:230000
KS ci ratio: 1.015324e-01	ci left: 6.112066e-03	ci right 6.770031e-03	k: 1480	n:230000
NRXN2   230000 perm   71 sec   (3262 perm/sec)   p_kst 6.434783e-03   p_cons 2.412913e-01   p_joint 1.010870e-02

Joint ci ratio: 8.107836e-02	ci left: 9.254570e-03	ci right 1.004067e-02	k: 2314	n:240000
Cons ci ratio: 1.419448e-02	ci left: 2.394313e-01	ci right 2.428583e-01	k: 57874	n:240000
KS ci ratio: 9.960220e-02	ci left: 6.092981e-03	ci right 6.735693e-03	k: 1538	n:240000
NRXN2   240000 perm   74 sec   (3229 perm/sec)   p_kst 6.408333e-03   p_cons 2.411417e-01   p_joint 9.641667e-03

Outputting figure to mutsig2_images.part000000000117/NRXN2.6_5496_240000_0.0064083_0.24114_0.0096417.png
                gene_name: NRXN2
               theta_stop: 0.100 
                    nperm: 240000 
                     p_ks: 0.0064 
        ci_ks_bounds_left: 0.0061 
       ci_ks_bounds_right: 0.0067 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.0096 
     ci_joint_bounds_left: 0.0093 
    ci_joint_bounds_right: 0.010 

Current progress: 29 percent done.
NPY2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.491928e-02	ci left: 5.476996e-01	ci right 5.672669e-01	k: 5575	n:10000
KS ci ratio: 1.612577e-02	ci left: 8.482515e-01	ci right 8.621409e-01	k: 8553	n:10000
NPY2R   10000 perm   2 sec   (6374 perm/sec)   p_kst 8.553000e-01   p_cons 5.575000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NPY2R.5_1150_10000_0.8553_0.5575_1.png
                gene_name: NPY2R
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
NR2F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.179038e-02	ci left: 9.115235e-01	ci right 9.224322e-01	k: 9171	n:10000
KS ci ratio: 2.193174e-02	ci left: 7.531230e-01	ci right 7.699244e-01	k: 7616	n:10000
NR2F2   10000 perm   1 sec   (6714 perm/sec)   p_kst 7.616000e-01   p_cons 9.171000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NR2F2.5_1304_10000_0.7616_0.9171_1.png
                gene_name: NR2F2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
NSFL1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.033869e-02	ci left: 3.678862e-01	ci right 3.869853e-01	k: 3774	n:10000
Cons ci ratio: 6.847959e-02	ci left: 2.382755e-01	ci right 2.552722e-01	k: 2467	n:10000
KS ci ratio: 5.752610e-02	ci left: 3.078845e-01	ci right 3.262222e-01	k: 3170	n:10000
NSFL1C   10000 perm   1 sec   (6871 perm/sec)   p_kst 3.170000e-01   p_cons 2.467000e-01   p_joint 3.774000e-01

Outputting figure to mutsig2_images.part000000000117/NSFL1C.5_1149_10000_0.317_0.2467_0.3774.png
                gene_name: NSFL1C
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 34 percent done.
NSUN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.682149e-02	ci left: 4.023300e-01	ci right 4.217213e-01	k: 4120	n:10000
Cons ci ratio: 4.620859e-02	ci left: 4.087065e-01	ci right 4.281410e-01	k: 4184	n:10000
KS ci ratio: 5.532926e-02	ci left: 3.248548e-01	ci right 3.434420e-01	k: 3341	n:10000
NSUN2   10000 perm   2 sec   (5939 perm/sec)   p_kst 3.341000e-01   p_cons 4.184000e-01   p_joint 4.120000e-01

Outputting figure to mutsig2_images.part000000000117/NSUN2.5_2380_10000_0.3341_0.4184_0.412.png
                gene_name: NSUN2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 36 percent done.
NPY1R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.648225e-02	ci left: 8.426459e-01	ci right 8.567497e-01	k: 8498	n:10000
Cons ci ratio: 4.202335e-02	ci left: 4.553853e-01	ci right 4.750350e-01	k: 4652	n:10000
KS ci ratio: 4.325991e-02	ci left: 4.410133e-01	ci right 4.606154e-01	k: 4508	n:10000
NPY1R   10000 perm   2 sec   (5043 perm/sec)   p_kst 4.508000e-01   p_cons 4.652000e-01   p_joint 8.498000e-01

Outputting figure to mutsig2_images.part000000000117/NPY1R.4_1163_10000_0.4508_0.4652_0.8498.png
                gene_name: NPY1R
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 38 percent done.
NR1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.499528e-02	ci left: 3.275355e-01	ci right 3.461596e-01	k: 3368	n:10000
Cons ci ratio: 5.925716e-02	ci left: 2.952901e-01	ci right 3.134240e-01	k: 3043	n:10000
KS ci ratio: 5.838717e-02	ci left: 3.015367e-01	ci right 3.197737e-01	k: 3106	n:10000
NR1D1   10000 perm   2 sec   (6396 perm/sec)   p_kst 3.106000e-01   p_cons 3.043000e-01   p_joint 3.368000e-01

Outputting figure to mutsig2_images.part000000000117/NR1D1.4_1877_10000_0.3106_0.3043_0.3368.png
                gene_name: NR1D1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 40 percent done.
NR1H3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.121886e-01	ci left: 2.949052e-02	ci right 3.658492e-02	k: 329	n:10000
Cons ci ratio: 8.130572e-02	ci left: 1.808759e-01	ci right 1.963059e-01	k: 1885	n:10000
KS ci ratio: 2.870972e-01	ci left: 1.567108e-02	ci right 2.101476e-02	k: 182	n:10000
NR1H3   10000 perm   2 sec   (6396 perm/sec)   p_kst 1.820000e-02   p_cons 1.885000e-01   p_joint 3.290000e-02

Joint ci ratio: 1.529431e-01	ci left: 2.936331e-02	ci right 3.427405e-02	k: 635	n:20000
Cons ci ratio: 5.668827e-02	ci left: 1.874515e-01	ci right 1.984379e-01	k: 3858	n:20000
KS ci ratio: 1.947721e-01	ci left: 1.791431e-02	ci right 2.182703e-02	k: 396	n:20000
NR1H3   20000 perm   3 sec   (5740 perm/sec)   p_kst 1.980000e-02   p_cons 1.929000e-01   p_joint 3.175000e-02

Joint ci ratio: 1.643936e-01	ci left: 1.706924e-02	ci right 2.015832e-02	k: 557	n:30000
Cons ci ratio: 4.766039e-02	ci left: 1.795963e-01	ci right 1.883983e-01	k: 5519	n:30000
KS ci ratio: 1.609028e-01	ci left: 1.783724e-02	ci right 2.099014e-02	k: 581	n:30000
NR1H3   30000 perm   5 sec   (5521 perm/sec)   p_kst 1.936667e-02   p_cons 1.839667e-01   p_joint 1.856667e-02

Joint ci ratio: 1.517883e-01	ci left: 1.515398e-02	ci right 1.766693e-02	k: 655	n:40000
Cons ci ratio: 4.127521e-02	ci left: 1.801885e-01	ci right 1.878075e-01	k: 7359	n:40000
KS ci ratio: 1.415959e-01	ci left: 1.746740e-02	ci right 2.015311e-02	k: 751	n:40000
NR1H3   40000 perm   8 sec   (5254 perm/sec)   p_kst 1.877500e-02   p_cons 1.839750e-01   p_joint 1.637500e-02

Joint ci ratio: 1.222782e-01	ci left: 1.890719e-02	ci right 2.138896e-02	k: 1006	n:50000
Cons ci ratio: 3.677817e-02	ci left: 1.817240e-01	ci right 1.885526e-01	k: 9256	n:50000
KS ci ratio: 1.262375e-01	ci left: 1.772442e-02	ci right 2.013190e-02	k: 945	n:50000
NR1H3   50000 perm   10 sec   (5058 perm/sec)   p_kst 1.890000e-02   p_cons 1.851200e-01   p_joint 2.012000e-02

Joint ci ratio: 9.699561e-02	ci left: 2.521316e-02	ci right 2.779958e-02	k: 1589	n:60000
Cons ci ratio: 3.369553e-02	ci left: 1.809397e-01	ci right 1.871576e-01	k: 11042	n:60000
KS ci ratio: 1.112212e-01	ci left: 1.915408e-02	ci right 2.142599e-02	k: 1216	n:60000
NR1H3   60000 perm   12 sec   (4997 perm/sec)   p_kst 2.026667e-02   p_cons 1.840333e-01   p_joint 2.648333e-02

Joint ci ratio: 9.220284e-02	ci left: 2.400961e-02	ci right 2.634426e-02	k: 1761	n:70000
Cons ci ratio: 3.114493e-02	ci left: 1.816609e-01	ci right 1.874224e-01	k: 12917	n:70000
KS ci ratio: 1.045154e-01	ci left: 1.866942e-02	ci right 2.074209e-02	k: 1378	n:70000
NR1H3   70000 perm   14 sec   (4927 perm/sec)   p_kst 1.968571e-02   p_cons 1.845286e-01   p_joint 2.515714e-02

Joint ci ratio: 8.916906e-02	ci left: 2.253470e-02	ci right 2.465004e-02	k: 1886	n:80000
Cons ci ratio: 2.913152e-02	ci left: 1.818670e-01	ci right 1.872559e-01	k: 14764	n:80000
KS ci ratio: 9.798754e-02	ci left: 1.865062e-02	ci right 2.058444e-02	k: 1568	n:80000
NR1H3   80000 perm   16 sec   (4855 perm/sec)   p_kst 1.960000e-02   p_cons 1.845500e-01   p_joint 2.357500e-02

Outputting figure to mutsig2_images.part000000000117/NR1H3.4_1380_80000_0.0196_0.18455_0.023575.png
                gene_name: NR1H3
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 41 percent done.
NR2C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.594356e-01	ci left: 5.243929e-02	ci right 6.162089e-02	k: 569	n:10000
Cons ci ratio: 1.138976e-01	ci left: 9.983694e-02	ci right 1.119937e-01	k: 1058	n:10000
KS ci ratio: 1.591398e-01	ci left: 5.263174e-02	ci right 6.182831e-02	k: 571	n:10000
NR2C1   10000 perm   1 sec   (6693 perm/sec)   p_kst 5.710000e-02   p_cons 1.058000e-01   p_joint 5.690000e-02

Joint ci ratio: 1.042287e-01	ci left: 6.259732e-02	ci right 6.952949e-02	k: 1320	n:20000
Cons ci ratio: 7.685506e-02	ci left: 1.106590e-01	ci right 1.195532e-01	k: 2301	n:20000
KS ci ratio: 1.124271e-01	ci left: 5.406982e-02	ci right 6.055963e-02	k: 1145	n:20000
NR2C1   20000 perm   3 sec   (5913 perm/sec)   p_kst 5.725000e-02   p_cons 1.150500e-01   p_joint 6.600000e-02

Joint ci ratio: 1.053673e-01	ci left: 4.177175e-02	ci right 4.645039e-02	k: 1322	n:30000
Cons ci ratio: 6.245628e-02	ci left: 1.124299e-01	ci right 1.197113e-01	k: 3481	n:30000
KS ci ratio: 9.211004e-02	ci left: 5.430500e-02	ci right 5.958121e-02	k: 1707	n:30000
NR2C1   30000 perm   5 sec   (5689 perm/sec)   p_kst 5.690000e-02   p_cons 1.160333e-01   p_joint 4.406667e-02

Joint ci ratio: 9.016040e-02	ci left: 4.308689e-02	ci right 4.717947e-02	k: 1804	n:40000
Cons ci ratio: 5.584348e-02	ci left: 1.066039e-01	ci right 1.127529e-01	k: 4386	n:40000
KS ci ratio: 7.968339e-02	ci left: 5.477224e-02	ci right 5.934233e-02	k: 2281	n:40000
NR2C1   40000 perm   7 sec   (5528 perm/sec)   p_kst 5.702500e-02   p_cons 1.096500e-01   p_joint 4.510000e-02

Outputting figure to mutsig2_images.part000000000117/NR2C1.4_1942_40000_0.057025_0.10965_0.0451.png
                gene_name: NR2C1
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 43 percent done.
NR2C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.821140e-02	ci left: 3.882876e-01	ci right 4.075719e-01	k: 3979	n:10000
Cons ci ratio: 1.115553e-01	ci left: 1.037366e-01	ci right 1.160916e-01	k: 1098	n:10000
KS ci ratio: 8.317272e-03	ci left: 9.528388e-01	ci right 9.608923e-01	k: 9570	n:10000
NR2C2   10000 perm   2 sec   (5983 perm/sec)   p_kst 9.570000e-01   p_cons 1.098000e-01   p_joint 3.979000e-01

Joint ci ratio: 3.424376e-02	ci left: 3.890132e-01	ci right 4.026171e-01	k: 7916	n:20000
Cons ci ratio: 7.980377e-02	ci left: 1.033377e-01	ci right 1.119767e-01	k: 2152	n:20000
KS ci ratio: 5.945839e-03	ci left: 9.531171e-01	ci right 9.588494e-01	k: 19121	n:20000
NR2C2   20000 perm   4 sec   (5499 perm/sec)   p_kst 9.560500e-01   p_cons 1.076000e-01   p_joint 3.958000e-01

Outputting figure to mutsig2_images.part000000000117/NR2C2.4_1904_20000_0.95605_0.1076_0.3958.png
                gene_name: NR2C2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 45 percent done.
NR3C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.940461e-02	ci left: 7.952698e-01	ci right 8.109533e-01	k: 8032	n:10000
KS ci ratio: 3.016730e-02	ci left: 6.184406e-01	ci right 6.374848e-01	k: 6280	n:10000
NR3C1   10000 perm   2 sec   (5931 perm/sec)   p_kst 6.280000e-01   p_cons 8.032000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NR3C1.4_2421_10000_0.628_0.8032_1.png
                gene_name: NR3C1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
NR4A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.449503e-02	ci left: 4.271481e-01	ci right 4.466887e-01	k: 4369	n:10000
Cons ci ratio: 9.309272e-02	ci left: 1.435445e-01	ci right 1.576597e-01	k: 1505	n:10000
KS ci ratio: 2.698805e-02	ci left: 6.691442e-01	ci right 6.875518e-01	k: 6784	n:10000
NR4A3   10000 perm   2 sec   (5989 perm/sec)   p_kst 6.784000e-01   p_cons 1.505000e-01   p_joint 4.369000e-01

Outputting figure to mutsig2_images.part000000000117/NR4A3.4_2020_10000_0.6784_0.1505_0.4369.png
                gene_name: NR4A3
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 48 percent done.
NR5A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.032447e-02	ci left: 9.301971e-01	ci right 9.399476e-01	k: 9352	n:10000
KS ci ratio: 5.711794e-03	ci left: 9.763158e-01	ci right 9.820003e-01	k: 9793	n:10000
NR5A2   10000 perm   2 sec   (6150 perm/sec)   p_kst 9.793000e-01   p_cons 9.352000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NR5A2.4_1658_10000_0.9793_0.9352_1.png
                gene_name: NR5A2
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
NRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.822146e-02	ci left: 3.881880e-01	ci right 4.074716e-01	k: 3978	n:10000
Cons ci ratio: 2.570989e-02	ci left: 6.901044e-01	ci right 7.081794e-01	k: 6992	n:10000
KS ci ratio: 6.732082e-02	ci left: 2.446012e-01	ci right 2.617428e-01	k: 2531	n:10000
NRD1   10000 perm   2 sec   (5425 perm/sec)   p_kst 2.531000e-01   p_cons 6.992000e-01   p_joint 3.978000e-01

Outputting figure to mutsig2_images.part000000000117/NRD1.4_3792_10000_0.2531_0.6992_0.3978.png
                gene_name: NRD1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 52 percent done.
NRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.751719e-02	ci left: 2.435138e-01	ci right 2.606309e-01	k: 2520	n:10000
Cons ci ratio: 8.866392e-02	ci left: 1.562022e-01	ci right 1.707944e-01	k: 1634	n:10000
KS ci ratio: 4.771208e-02	ci left: 3.932662e-01	ci right 4.125904e-01	k: 4029	n:10000
NRF1   10000 perm   2 sec   (5458 perm/sec)   p_kst 4.029000e-01   p_cons 1.634000e-01   p_joint 2.520000e-01

Outputting figure to mutsig2_images.part000000000117/NRF1.4_1552_10000_0.4029_0.1634_0.252.png
                gene_name: NRF1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 53 percent done.
NT5C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.431467e-02	ci left: 4.291426e-01	ci right 4.486930e-01	k: 4389	n:10000
Cons ci ratio: 2.831517e-02	ci left: 6.477018e-01	ci right 6.664067e-01	k: 6571	n:10000
KS ci ratio: 6.261065e-02	ci left: 2.727001e-01	ci right 2.904273e-01	k: 2815	n:10000
NT5C2   10000 perm   2 sec   (6246 perm/sec)   p_kst 2.815000e-01   p_cons 6.571000e-01   p_joint 4.389000e-01

Outputting figure to mutsig2_images.part000000000117/NT5C2.4_1754_10000_0.2815_0.6571_0.4389.png
                gene_name: NT5C2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 55 percent done.
NT5C3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.271622e-02	ci left: 7.399757e-01	ci right 7.570793e-01	k: 7486	n:10000
KS ci ratio: 2.552671e-02	ci left: 6.931293e-01	ci right 7.111528e-01	k: 7022	n:10000
NT5C3L   10000 perm   2 sec   (6466 perm/sec)   p_kst 7.022000e-01   p_cons 7.486000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NT5C3L.4_939_10000_0.7022_0.7486_1.png
                gene_name: NT5C3L
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
NR0B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.730584e-01	ci left: 4.456333e-02	ci right 5.310195e-02	k: 487	n:10000
Cons ci ratio: 7.989902e-02	ci left: 1.861912e-01	ci right 2.017874e-01	k: 1939	n:10000
KS ci ratio: 2.521293e-01	ci left: 2.062036e-02	ci right 2.666153e-02	k: 235	n:10000
NR0B1   10000 perm   2 sec   (6329 perm/sec)   p_kst 2.350000e-02   p_cons 1.939000e-01   p_joint 4.870000e-02

Joint ci ratio: 1.189533e-01	ci left: 4.842873e-02	ci right 5.460248e-02	k: 1029	n:20000
Cons ci ratio: 5.555804e-02	ci left: 1.937332e-01	ci right 2.048543e-01	k: 3985	n:20000
KS ci ratio: 1.723925e-01	ci left: 2.302419e-02	ci right 2.741533e-02	k: 503	n:20000
NR0B1   20000 perm   3 sec   (5868 perm/sec)   p_kst 2.515000e-02   p_cons 1.992500e-01   p_joint 5.145000e-02

Joint ci ratio: 1.235472e-01	ci left: 3.045747e-02	ci right 3.450040e-02	k: 973	n:30000
Cons ci ratio: 4.549145e-02	ci left: 1.938669e-01	ci right 2.029249e-01	k: 5951	n:30000
KS ci ratio: 1.395331e-01	ci left: 2.384218e-02	ci right 2.745048e-02	k: 768	n:30000
NR0B1   30000 perm   5 sec   (5668 perm/sec)   p_kst 2.560000e-02   p_cons 1.983667e-01   p_joint 3.243333e-02

Joint ci ratio: 1.009156e-01	ci left: 3.451270e-02	ci right 3.820500e-02	k: 1453	n:40000
Cons ci ratio: 3.914166e-02	ci left: 1.965361e-01	ci right 2.044074e-01	k: 8018	n:40000
KS ci ratio: 1.225262e-01	ci left: 2.341930e-02	ci right 2.650019e-02	k: 997	n:40000
NR0B1   40000 perm   7 sec   (5537 perm/sec)   p_kst 2.492500e-02   p_cons 2.004500e-01   p_joint 3.632500e-02

Joint ci ratio: 1.019476e-01	ci left: 2.725395e-02	ci right 3.020110e-02	k: 1435	n:50000
Cons ci ratio: 3.502635e-02	ci left: 1.967994e-01	ci right 2.038354e-01	k: 10015	n:50000
KS ci ratio: 1.093441e-01	ci left: 2.368809e-02	ci right 2.644743e-02	k: 1252	n:50000
NR0B1   50000 perm   9 sec   (5368 perm/sec)   p_kst 2.504000e-02   p_cons 2.003000e-01   p_joint 2.870000e-02

Joint ci ratio: 1.076632e-01	ci left: 2.045164e-02	ci right 2.279495e-02	k: 1296	n:60000
Cons ci ratio: 3.188535e-02	ci left: 1.979984e-01	ci right 2.044305e-01	k: 12072	n:60000
KS ci ratio: 1.002144e-01	ci left: 2.361911e-02	ci right 2.612714e-02	k: 1491	n:60000
NR0B1   60000 perm   11 sec   (5259 perm/sec)   p_kst 2.485000e-02   p_cons 2.012000e-01   p_joint 2.160000e-02

Joint ci ratio: 7.589169e-02	ci left: 3.531921e-02	ci right 3.811936e-02	k: 2569	n:70000
Cons ci ratio: 3.034390e-02	ci left: 1.895850e-01	ci right 1.954406e-01	k: 13475	n:70000
KS ci ratio: 9.282621e-02	ci left: 2.368846e-02	ci right 2.600830e-02	k: 1738	n:70000
NR0B1   70000 perm   14 sec   (5156 perm/sec)   p_kst 2.482857e-02   p_cons 1.925000e-01   p_joint 3.670000e-02

Outputting figure to mutsig2_images.part000000000117/NR0B1.3_1421_70000_0.024829_0.1925_0.0367.png
                gene_name: NR0B1
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 59 percent done.
NR1I3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.195656e-02	ci left: 5.910228e-01	ci right 6.103185e-01	k: 6007	n:10000
Cons ci ratio: 6.928093e-02	ci left: 2.340268e-01	ci right 2.509234e-01	k: 2424	n:10000
KS ci ratio: 7.352362e-03	ci left: 9.623645e-01	ci right 9.695607e-01	k: 9661	n:10000
NR1I3   10000 perm   1 sec   (6811 perm/sec)   p_kst 9.661000e-01   p_cons 2.424000e-01   p_joint 6.007000e-01

Outputting figure to mutsig2_images.part000000000117/NR1I3.3_1225_10000_0.9661_0.2424_0.6007.png
                gene_name: NR1I3
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 60 percent done.
NR2E3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.420760e-02	ci left: 1.705475e-01	ci right 1.856405e-01	k: 1780	n:10000
Cons ci ratio: 1.369703e-01	ci left: 7.049285e-02	ci right 8.095591e-02	k: 756	n:10000
KS ci ratio: 4.454027e-02	ci left: 4.266495e-01	ci right 4.461876e-01	k: 4364	n:10000
NR2E3   10000 perm   1 sec   (7343 perm/sec)   p_kst 4.364000e-01   p_cons 7.560000e-02   p_joint 1.780000e-01

Joint ci ratio: 3.237381e-02	ci left: 4.160899e-01	ci right 4.298325e-01	k: 8459	n:20000
Cons ci ratio: 9.675099e-02	ci left: 7.216868e-02	ci right 7.955520e-02	k: 1516	n:20000
KS ci ratio: 3.171290e-02	ci left: 4.261680e-01	ci right 4.399514e-01	k: 8661	n:20000
NR2E3   20000 perm   3 sec   (6520 perm/sec)   p_kst 4.330500e-01   p_cons 7.580000e-02   p_joint 4.229500e-01

Outputting figure to mutsig2_images.part000000000117/NR2E3.3_1270_20000_0.43305_0.0758_0.42295.png
                gene_name: NR2E3
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 62 percent done.
NR2F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.612854e-03	ci left: 9.770621e-01	ci right 9.826535e-01	k: 9800	n:10000
Cons ci ratio: 4.029907e-02	ci left: 4.762592e-01	ci right 4.959489e-01	k: 4861	n:10000
KS ci ratio: 3.386300e-02	ci left: 5.628341e-01	ci right 5.823236e-01	k: 5726	n:10000
NR2F1   10000 perm   2 sec   (6630 perm/sec)   p_kst 5.726000e-01   p_cons 4.861000e-01   p_joint 9.800000e-01

Outputting figure to mutsig2_images.part000000000117/NR2F1.3_1284_10000_0.5726_0.4861_0.98.png
                gene_name: NR2F1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 64 percent done.
NR6A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.585553e-02	ci left: 3.206853e-01	ci right 3.392138e-01	k: 3299	n:10000
Cons ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
KS ci ratio: 1.987588e-02	ci left: 7.874592e-01	ci right 8.033683e-01	k: 7955	n:10000
NR6A1   10000 perm   1 sec   (6884 perm/sec)   p_kst 7.955000e-01   p_cons 4.320000e-02   p_joint 3.299000e-01

Joint ci ratio: 3.951818e-02	ci left: 3.231849e-01	ci right 3.362646e-01	k: 6594	n:20000
Cons ci ratio: 1.280629e-01	ci left: 4.187748e-02	ci right 4.765581e-02	k: 894	n:20000
KS ci ratio: 1.393745e-02	ci left: 7.925696e-01	ci right 8.037436e-01	k: 15964	n:20000
NR6A1   20000 perm   3 sec   (6101 perm/sec)   p_kst 7.982000e-01   p_cons 4.470000e-02   p_joint 3.297000e-01

Joint ci ratio: 3.559664e-02	ci left: 2.827141e-01	ci right 2.929937e-01	k: 8635	n:30000
Cons ci ratio: 1.040174e-01	ci left: 4.284418e-02	ci right 4.757773e-02	k: 1355	n:30000
KS ci ratio: 1.134566e-02	ci left: 7.945877e-01	ci right 8.036876e-01	k: 23975	n:30000
NR6A1   30000 perm   5 sec   (5735 perm/sec)   p_kst 7.991667e-01   p_cons 4.516667e-02   p_joint 2.878333e-01

Joint ci ratio: 3.441148e-02	ci left: 2.407168e-01	ci right 2.491703e-01	k: 9797	n:40000
Cons ci ratio: 9.098164e-02	ci left: 4.232868e-02	ci right 4.638780e-02	k: 1773	n:40000
KS ci ratio: 9.878881e-03	ci left: 7.934522e-01	ci right 8.013545e-01	k: 31897	n:40000
NR6A1   40000 perm   7 sec   (5519 perm/sec)   p_kst 7.974250e-01   p_cons 4.432500e-02   p_joint 2.449250e-01

Outputting figure to mutsig2_images.part000000000117/NR6A1.3_1483_40000_0.79743_0.044325_0.24493.png
                gene_name: NR6A1
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 66 percent done.
NRBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.679726e-02	ci left: 8.376546e-01	ci right 8.519439e-01	k: 8449	n:10000
KS ci ratio: 4.965508e-03	ci left: 9.816675e-01	ci right 9.866446e-01	k: 9843	n:10000
NRBP1   10000 perm   2 sec   (6105 perm/sec)   p_kst 9.843000e-01   p_cons 8.449000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NRBP1.3_1676_10000_0.9843_0.8449_1.png
                gene_name: NRBP1
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
NSMAF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.018502e-02	ci left: 1.516867e-01	ci right 1.661126e-01	k: 1588	n:10000
Cons ci ratio: 9.397593e-02	ci left: 1.411914e-01	ci right 1.552142e-01	k: 1481	n:10000
KS ci ratio: 8.355196e-02	ci left: 1.728091e-01	ci right 1.879776e-01	k: 1803	n:10000
NSMAF   10000 perm   2 sec   (5880 perm/sec)   p_kst 1.803000e-01   p_cons 1.481000e-01   p_joint 1.588000e-01

Outputting figure to mutsig2_images.part000000000117/NSMAF.3_3034_10000_0.1803_0.1481_0.1588.png
                gene_name: NSMAF
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 69 percent done.
NSUN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.276574e-02	ci left: 2.717099e-01	ci right 2.894181e-01	k: 2805	n:10000
Cons ci ratio: 5.154889e-02	ci left: 3.568471e-01	ci right 3.758308e-01	k: 3663	n:10000
KS ci ratio: 7.496836e-02	ci left: 2.065875e-01	ci right 2.227791e-01	k: 2146	n:10000
NSUN3   10000 perm   2 sec   (6561 perm/sec)   p_kst 2.146000e-01   p_cons 3.663000e-01   p_joint 2.805000e-01

Outputting figure to mutsig2_images.part000000000117/NSUN3.3_1047_10000_0.2146_0.3663_0.2805.png
                gene_name: NSUN3
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 71 percent done.
NT5E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.584973e-02	ci left: 4.124934e-01	ci right 4.319520e-01	k: 4222	n:10000
Cons ci ratio: 2.095822e-02	ci left: 7.694204e-01	ci right 7.858176e-01	k: 7777	n:10000
KS ci ratio: 6.231794e-02	ci left: 2.745815e-01	ci right 2.923448e-01	k: 2834	n:10000
NT5E   10000 perm   2 sec   (6451 perm/sec)   p_kst 2.834000e-01   p_cons 7.777000e-01   p_joint 4.222000e-01

Outputting figure to mutsig2_images.part000000000117/NT5E.3_1761_10000_0.2834_0.7777_0.4222.png
                gene_name: NT5E
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 72 percent done.
NTAN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.344460e-02	ci left: 8.886212e-01	ci right 9.007478e-01	k: 8948	n:10000
Cons ci ratio: 2.176870e-02	ci left: 7.558549e-01	ci right 7.725909e-01	k: 7643	n:10000
KS ci ratio: 2.277052e-02	ci left: 7.390659e-01	ci right 7.561897e-01	k: 7477	n:10000
NTAN1   10000 perm   2 sec   (6195 perm/sec)   p_kst 7.477000e-01   p_cons 7.643000e-01   p_joint 8.948000e-01

Outputting figure to mutsig2_images.part000000000117/NTAN1.3_973_10000_0.7477_0.7643_0.8948.png
                gene_name: NTAN1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 74 percent done.
NPY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.299974e-02	ci left: 2.702248e-01	ci right 2.879041e-01	k: 2790	n:10000
KS ci ratio: 1.703364e-02	ci left: 8.338874e-01	ci right 8.483133e-01	k: 8412	n:10000
NPY   10000 perm   1 sec   (7419 perm/sec)   p_kst 8.412000e-01   p_cons 2.790000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NPY.2_306_10000_0.8412_0.279_1.png
                gene_name: NPY
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
NPY5R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.376126e-02	ci left: 4.353266e-01	ci right 4.549054e-01	k: 4451	n:10000
Cons ci ratio: 6.508261e-02	ci left: 2.574577e-01	ci right 2.748787e-01	k: 2661	n:10000
KS ci ratio: 1.934937e-02	ci left: 7.961830e-01	ci right 8.118395e-01	k: 8041	n:10000
NPY5R   10000 perm   1 sec   (6853 perm/sec)   p_kst 8.041000e-01   p_cons 2.661000e-01   p_joint 4.451000e-01

Outputting figure to mutsig2_images.part000000000117/NPY5R.2_1342_10000_0.8041_0.2661_0.4451.png
                gene_name: NPY5R
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 78 percent done.
NR1H4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.262044e-02	ci left: 3.474035e-01	ci right 3.662799e-01	k: 3568	n:10000
KS ci ratio: 5.086757e-02	ci left: 3.630124e-01	ci right 3.820619e-01	k: 3725	n:10000
NR1H4   10000 perm   1 sec   (6959 perm/sec)   p_kst 3.725000e-01   p_cons 3.568000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NR1H4.2_1455_10000_0.3725_0.3568_1.png
                gene_name: NR1H4
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
NR1I2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.786148e-02	ci left: 8.205599e-01	ci right 8.354485e-01	k: 8281	n:10000
KS ci ratio: 4.801080e-02	ci left: 3.902789e-01	ci right 4.095794e-01	k: 3999	n:10000
NR1I2   10000 perm   1 sec   (6910 perm/sec)   p_kst 3.999000e-01   p_cons 8.281000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NR1I2.2_1458_10000_0.3999_0.8281_1.png
                gene_name: NR1I2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
NR2E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.027259e-01	ci left: 1.205332e-01	ci right 1.336849e-01	k: 1270	n:10000
KS ci ratio: 6.317239e-02	ci left: 2.691358e-01	ci right 2.867938e-01	k: 2779	n:10000
NR2E1   10000 perm   1 sec   (7465 perm/sec)   p_kst 2.779000e-01   p_cons 1.270000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.308482e-02	ci left: 1.211352e-01	ci right 1.303739e-01	k: 2514	n:20000
KS ci ratio: 4.468658e-02	ci left: 2.716000e-01	ci right 2.840647e-01	k: 5556	n:20000
NR2E1   20000 perm   3 sec   (6646 perm/sec)   p_kst 2.778000e-01   p_cons 1.257000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NR2E1.2_1194_20000_0.2778_0.1257_1.png
                gene_name: NR2E1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
NR4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.707466e-02	ci left: 6.677342e-01	ci right 6.861626e-01	k: 6770	n:10000
KS ci ratio: 1.516850e-01	ci left: 5.783363e-02	ci right 6.742310e-02	k: 625	n:10000
NR4A1   10000 perm   1 sec   (7119 perm/sec)   p_kst 6.250000e-02   p_cons 6.770000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.905130e-02	ci left: 6.726299e-01	ci right 6.856180e-01	k: 13583	n:20000
KS ci ratio: 1.055174e-01	ci left: 6.113414e-02	ci right 6.799312e-02	k: 1290	n:20000
NR4A1   20000 perm   3 sec   (6368 perm/sec)   p_kst 6.450000e-02   p_cons 6.791500e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.564777e-02	ci left: 6.712397e-01	ci right 6.818594e-01	k: 20297	n:30000
KS ci ratio: 8.541492e-02	ci left: 6.279123e-02	ci right 6.842658e-02	k: 1967	n:30000
NR4A1   30000 perm   5 sec   (6064 perm/sec)   p_kst 6.556667e-02   p_cons 6.765667e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NR4A1.2_1821_30000_0.065567_0.67657_1.png
                gene_name: NR4A1
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
NRBF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.250251e-02	ci left: 2.733932e-01	ci right 2.911338e-01	k: 2822	n:10000
Cons ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
KS ci ratio: 2.325328e-02	ci left: 7.309807e-01	ci right 7.482795e-01	k: 7397	n:10000
NRBF2   10000 perm   1 sec   (7341 perm/sec)   p_kst 7.397000e-01   p_cons 2.157000e-01   p_joint 2.822000e-01

Outputting figure to mutsig2_images.part000000000117/NRBF2.2_880_10000_0.7397_0.2157_0.2822.png
                gene_name: NRBF2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 86 percent done.
NRBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.783640e-02	ci left: 8.209666e-01	ci right 8.358415e-01	k: 8285	n:10000
KS ci ratio: 3.077061e-02	ci left: 6.090969e-01	ci right 6.282339e-01	k: 6187	n:10000
NRBP2   10000 perm   1 sec   (6885 perm/sec)   p_kst 6.187000e-01   p_cons 8.285000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NRBP2.2_1578_10000_0.6187_0.8285_1.png
                gene_name: NRBP2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
NRN1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.454932e-02	ci left: 4.265498e-01	ci right 4.460873e-01	k: 4363	n:10000
KS ci ratio: 2.549086e-01	ci left: 2.015152e-02	ci right 2.613074e-02	k: 230	n:10000
NRN1L   10000 perm   1 sec   (6727 perm/sec)   p_kst 2.300000e-02   p_cons 4.363000e-01   p_joint 1

Joint ci ratio: 3.027274e-02	ci left: 4.490792e-01	ci right 4.629336e-01	k: 9120	n:20000
Cons ci ratio: 3.145591e-02	ci left: 4.301602e-01	ci right 4.439581e-01	k: 8741	n:20000
KS ci ratio: 1.800525e-01	ci left: 2.106263e-02	ci right 2.527757e-02	k: 462	n:20000
NRN1L   20000 perm   3 sec   (6301 perm/sec)   p_kst 2.310000e-02   p_cons 4.370500e-01   p_joint 4.560000e-01

Joint ci ratio: 5.293009e-02	ci left: 1.504600e-01	ci right 1.586736e-01	k: 4636	n:30000
Cons ci ratio: 2.664712e-02	ci left: 4.134415e-01	ci right 4.246409e-01	k: 12571	n:30000
KS ci ratio: 1.516017e-01	ci left: 2.014522e-02	ci right 2.348162e-02	k: 653	n:30000
NRN1L   30000 perm   5 sec   (6167 perm/sec)   p_kst 2.176667e-02   p_cons 4.190333e-01   p_joint 1.545333e-01

Joint ci ratio: 3.545435e-02	ci left: 2.299076e-01	ci right 2.382310e-01	k: 9362	n:40000
Cons ci ratio: 2.312648e-02	ci left: 4.131600e-01	ci right 4.228519e-01	k: 16720	n:40000
KS ci ratio: 1.320677e-01	ci left: 2.012510e-02	ci right 2.299494e-02	k: 861	n:40000
NRN1L   40000 perm   7 sec   (5988 perm/sec)   p_kst 2.152500e-02   p_cons 4.180000e-01   p_joint 2.340500e-01

Joint ci ratio: 4.354706e-02	ci left: 1.364147e-01	ci right 1.425072e-01	k: 6972	n:50000
Cons ci ratio: 2.072600e-02	ci left: 4.127131e-01	ci right 4.213766e-01	k: 20852	n:50000
KS ci ratio: 1.172113e-01	ci left: 2.059611e-02	ci right 2.317982e-02	k: 1093	n:50000
NRN1L   50000 perm   9 sec   (5771 perm/sec)   p_kst 2.186000e-02   p_cons 4.170400e-01   p_joint 1.394400e-01

Joint ci ratio: 3.660000e-02	ci left: 1.575545e-01	ci right 1.634451e-01	k: 9629	n:60000
Cons ci ratio: 1.887134e-02	ci left: 4.143487e-01	ci right 4.222592e-01	k: 25098	n:60000
KS ci ratio: 1.068243e-01	ci left: 2.077622e-02	ci right 2.313700e-02	k: 1316	n:60000
NRN1L   60000 perm   11 sec   (5677 perm/sec)   p_kst 2.193333e-02   p_cons 4.183000e-01   p_joint 1.604833e-01

Joint ci ratio: 3.537058e-02	ci left: 1.466248e-01	ci right 1.519186e-01	k: 10448	n:70000
Cons ci ratio: 1.747565e-02	ci left: 4.145280e-01	ci right 4.218502e-01	k: 29273	n:70000
KS ci ratio: 9.995287e-02	ci left: 2.042431e-02	ci right 2.258704e-02	k: 1504	n:70000
NRN1L   70000 perm   13 sec   (5588 perm/sec)   p_kst 2.148571e-02   p_cons 4.181857e-01   p_joint 1.492571e-01

Outputting figure to mutsig2_images.part000000000117/NRN1L.2_510_70000_0.021486_0.41819_0.14926.png
                gene_name: NRN1L
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 90 percent done.
NRSN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.969303e-02	ci left: 1.271849e-01	ci right 1.406292e-01	k: 1338	n:10000
Cons ci ratio: 9.846546e-02	ci left: 1.300234e-01	ci right 1.435889e-01	k: 1367	n:10000
KS ci ratio: 2.169949e-01	ci left: 2.816365e-02	ci right 3.511272e-02	k: 315	n:10000
NRSN1   10000 perm   1 sec   (7089 perm/sec)   p_kst 3.150000e-02   p_cons 1.367000e-01   p_joint 1.338000e-01

Joint ci ratio: 9.688928e-02	ci left: 7.197315e-02	ci right 7.935078e-02	k: 1512	n:20000
Cons ci ratio: 6.917347e-02	ci left: 1.335435e-01	ci right 1.431619e-01	k: 2766	n:20000
KS ci ratio: 1.543269e-01	ci left: 2.883384e-02	ci right 3.370369e-02	k: 624	n:20000
NRSN1   20000 perm   3 sec   (6320 perm/sec)   p_kst 3.120000e-02   p_cons 1.383000e-01   p_joint 7.560000e-02

Joint ci ratio: 7.820985e-02	ci left: 7.423681e-02	ci right 8.031202e-02	k: 2317	n:30000
Cons ci ratio: 5.667450e-02	ci left: 1.336217e-01	ci right 1.414487e-01	k: 4125	n:30000
KS ci ratio: 1.238102e-01	ci left: 3.032813e-02	ci right 3.436310e-02	k: 969	n:30000
NRSN1   30000 perm   5 sec   (6154 perm/sec)   p_kst 3.230000e-02   p_cons 1.375000e-01   p_joint 7.723333e-02

Joint ci ratio: 5.955503e-02	ci left: 9.480713e-02	ci right 1.006514e-01	k: 3908	n:40000
Cons ci ratio: 4.945408e-02	ci left: 1.323826e-01	ci right 1.391203e-01	k: 5429	n:40000
KS ci ratio: 1.088128e-01	ci left: 2.971253e-02	ci right 3.315593e-02	k: 1256	n:40000
NRSN1   40000 perm   7 sec   (5989 perm/sec)   p_kst 3.140000e-02   p_cons 1.357250e-01   p_joint 9.770000e-02

Joint ci ratio: 5.804885e-02	ci left: 8.114865e-02	ci right 8.601982e-02	k: 4178	n:50000
Cons ci ratio: 4.421619e-02	ci left: 1.328283e-01	ci right 1.388541e-01	k: 6791	n:50000
KS ci ratio: 9.867060e-02	ci left: 2.908813e-02	ci right 3.212669e-02	k: 1529	n:50000
NRSN1   50000 perm   8 sec   (5883 perm/sec)   p_kst 3.058000e-02   p_cons 1.358200e-01   p_joint 8.356000e-02

Outputting figure to mutsig2_images.part000000000117/NRSN1.2_596_50000_0.03058_0.13582_0.08356.png
                gene_name: NRSN1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.086 

Current progress: 91 percent done.
NSDHL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.329851e-02	ci left: 2.683438e-01	ci right 2.859862e-01	k: 2771	n:10000
Cons ci ratio: 9.145415e-02	ci left: 1.480561e-01	ci right 1.623454e-01	k: 1551	n:10000
KS ci ratio: 9.287501e-02	ci left: 1.441328e-01	ci right 1.582710e-01	k: 1511	n:10000
NSDHL   10000 perm   1 sec   (7178 perm/sec)   p_kst 1.511000e-01   p_cons 1.551000e-01   p_joint 2.771000e-01

Outputting figure to mutsig2_images.part000000000117/NSDHL.2_1150_10000_0.1511_0.1551_0.2771.png
                gene_name: NSDHL
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 93 percent done.
NSUN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.102486e-02	ci left: 7.683064e-01	ci right 7.847323e-01	k: 7766	n:10000
KS ci ratio: 9.418105e-03	ci left: 9.408695e-01	ci right 9.498689e-01	k: 9455	n:10000
NSUN4   10000 perm   1 sec   (6964 perm/sec)   p_kst 9.455000e-01   p_cons 7.766000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NSUN4.2_1179_10000_0.9455_0.7766_1.png
                gene_name: NSUN4
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
NSUN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.445662e-02	ci left: 7.108847e-01	ci right 7.285871e-01	k: 7198	n:10000
KS ci ratio: 3.522458e-02	ci left: 5.433915e-01	ci right 5.629775e-01	k: 5532	n:10000
NSUN6   10000 perm   1 sec   (7040 perm/sec)   p_kst 5.532000e-01   p_cons 7.198000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000117/NSUN6.2_1454_10000_0.5532_0.7198_1.png
                gene_name: NSUN6
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
NT5C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.611379e-02	ci left: 4.097030e-01	ci right 4.291440e-01	k: 4194	n:10000
Cons ci ratio: 7.012086e-02	ci left: 2.296806e-01	ci right 2.464723e-01	k: 2380	n:10000
KS ci ratio: 3.988200e-02	ci left: 4.814554e-01	ci right 5.011497e-01	k: 4913	n:10000
NT5C3   10000 perm   1 sec   (6849 perm/sec)   p_kst 4.913000e-01   p_cons 2.380000e-01   p_joint 4.194000e-01

Outputting figure to mutsig2_images.part000000000117/NT5C3.2_1087_10000_0.4913_0.238_0.4194.png
                gene_name: NT5C3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 98 percent done.
NT5DC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.812237e-01	ci left: 2.189796e-03	ci right 4.514469e-03	k: 32	n:10000
Cons ci ratio: 6.614075e-01	ci left: 2.355713e-03	ci right 4.747948e-03	k: 34	n:10000
KS ci ratio: 5.779280e-02	ci left: 3.059006e-01	ci right 3.242072e-01	k: 3150	n:10000
NT5DC3   10000 perm   2 sec   (6521 perm/sec)   p_kst 3.150000e-01   p_cons 3.400000e-03   p_joint 3.200000e-03

Joint ci ratio: 4.429753e-01	ci left: 3.039518e-03	ci right 4.809524e-03	k: 77	n:20000
Cons ci ratio: 4.579519e-01	ci left: 2.817812e-03	ci right 4.531487e-03	k: 72	n:20000
KS ci ratio: 4.053671e-02	ci left: 3.120946e-01	ci right 3.250581e-01	k: 6371	n:20000
NT5DC3   20000 perm   3 sec   (6078 perm/sec)   p_kst 3.185500e-01   p_cons 3.600000e-03   p_joint 3.850000e-03

Joint ci ratio: 3.443882e-01	ci left: 3.560779e-03	ci right 5.071034e-03	k: 128	n:30000
Cons ci ratio: 3.586265e-01	ci left: 3.256774e-03	ci right 4.708553e-03	k: 118	n:30000
KS ci ratio: 3.307779e-02	ci left: 3.135610e-01	ci right 3.241408e-01	k: 9565	n:30000
NT5DC3   30000 perm   5 sec   (5822 perm/sec)   p_kst 3.188333e-01   p_cons 3.933333e-03   p_joint 4.266667e-03

Joint ci ratio: 3.000070e-01	ci left: 3.613074e-03	ci right 4.910520e-03	k: 169	n:40000
Cons ci ratio: 3.183984e-01	ci left: 3.174780e-03	ci right 4.398997e-03	k: 150	n:40000
KS ci ratio: 2.862260e-02	ci left: 3.146324e-01	ci right 3.237939e-01	k: 12768	n:40000
NT5DC3   40000 perm   7 sec   (5642 perm/sec)   p_kst 3.192000e-01   p_cons 3.750000e-03   p_joint 4.225000e-03

Joint ci ratio: 2.686527e-01	ci left: 3.670745e-03	ci right 4.827978e-03	k: 211	n:50000
Cons ci ratio: 2.853546e-01	ci left: 3.223947e-03	ci right 4.314914e-03	k: 187	n:50000
KS ci ratio: 2.560938e-02	ci left: 3.149750e-01	ci right 3.231660e-01	k: 15953	n:50000
NT5DC3   50000 perm   9 sec   (5479 perm/sec)   p_kst 3.190600e-01   p_cons 3.740000e-03   p_joint 4.220000e-03

Joint ci ratio: 2.479019e-01	ci left: 3.635747e-03	ci right 4.679779e-03	k: 248	n:60000
Cons ci ratio: 2.620122e-01	ci left: 3.229993e-03	ci right 4.218966e-03	k: 222	n:60000
KS ci ratio: 2.339493e-02	ci left: 3.150219e-01	ci right 3.224957e-01	k: 19125	n:60000
NT5DC3   60000 perm   12 sec   (5173 perm/sec)   p_kst 3.187500e-01   p_cons 3.700000e-03   p_joint 4.133333e-03

Joint ci ratio: 2.273615e-01	ci left: 3.747899e-03	ci right 4.722473e-03	k: 295	n:70000
Cons ci ratio: 2.408022e-01	ci left: 3.317453e-03	ci right 4.238719e-03	k: 263	n:70000
KS ci ratio: 2.168636e-02	ci left: 3.147642e-01	ci right 3.216794e-01	k: 22275	n:70000
NT5DC3   70000 perm   14 sec   (5088 perm/sec)   p_kst 3.182143e-01   p_cons 3.757143e-03   p_joint 4.214286e-03

Joint ci ratio: 2.127677e-01	ci left: 3.775506e-03	ci right 4.686025e-03	k: 337	n:80000
Cons ci ratio: 2.247698e-01	ci left: 3.361879e-03	ci right 4.224721e-03	k: 302	n:80000
KS ci ratio: 2.028006e-02	ci left: 3.151099e-01	ci right 3.215783e-01	k: 25467	n:80000
NT5DC3   80000 perm   16 sec   (5000 perm/sec)   p_kst 3.183375e-01   p_cons 3.775000e-03   p_joint 4.212500e-03

Joint ci ratio: 1.378879e-01	ci left: 8.285989e-03	ci right 9.523753e-03	k: 800	n:90000
Cons ci ratio: 2.112552e-01	ci left: 3.408541e-03	ci right 4.223954e-03	k: 342	n:90000
KS ci ratio: 1.912977e-02	ci left: 3.150797e-01	ci right 3.211764e-01	k: 28631	n:90000
NT5DC3   90000 perm   18 sec   (4917 perm/sec)   p_kst 3.181222e-01   p_cons 3.800000e-03   p_joint 8.888889e-03

Joint ci ratio: 1.305901e-01	ci left: 8.346525e-03	ci right 9.522224e-03	k: 892	n:100000
Cons ci ratio: 1.991363e-01	ci left: 3.475620e-03	ci right 4.253593e-03	k: 385	n:100000
KS ci ratio: 1.816414e-02	ci left: 3.148546e-01	ci right 3.206360e-01	k: 31774	n:100000
NT5DC3   100000 perm   21 sec   (4850 perm/sec)   p_kst 3.177400e-01   p_cons 3.850000e-03   p_joint 8.920000e-03

Joint ci ratio: 1.768733e-01	ci left: 4.052197e-03	ci right 4.847007e-03	k: 488	n:110000
Cons ci ratio: 1.873607e-01	ci left: 3.592245e-03	ci right 4.343371e-03	k: 435	n:110000
KS ci ratio: 1.729254e-02	ci left: 3.156473e-01	ci right 3.211623e-01	k: 35024	n:110000
NT5DC3   110000 perm   23 sec   (4765 perm/sec)   p_kst 3.184000e-01   p_cons 3.954545e-03   p_joint 4.436364e-03

Joint ci ratio: 1.633682e-01	ci left: 4.384811e-03	ci right 5.172748e-03	k: 572	n:120000
Cons ci ratio: 1.774536e-01	ci left: 3.690560e-03	ci right 4.417063e-03	k: 485	n:120000
KS ci ratio: 1.656464e-02	ci left: 3.155483e-01	ci right 3.208272e-01	k: 38182	n:120000
NT5DC3   120000 perm   26 sec   (4674 perm/sec)   p_kst 3.181833e-01   p_cons 4.041667e-03   p_joint 4.766667e-03

Joint ci ratio: 1.560462e-01	ci left: 4.453704e-03	ci right 5.214796e-03	k: 627	n:130000
Cons ci ratio: 1.694450e-01	ci left: 3.752530e-03	ci right 4.454490e-03	k: 532	n:130000
KS ci ratio: 1.592126e-02	ci left: 3.154764e-01	ci right 3.205471e-01	k: 41341	n:130000
NT5DC3   130000 perm   29 sec   (4548 perm/sec)   p_kst 3.180077e-01   p_cons 4.092308e-03   p_joint 4.823077e-03

Joint ci ratio: 1.501812e-01	ci left: 4.479049e-03	ci right 5.213118e-03	k: 677	n:140000
Cons ci ratio: 1.628545e-01	ci left: 3.785718e-03	ci right 4.463645e-03	k: 576	n:140000
KS ci ratio: 1.534089e-02	ci left: 3.156035e-01	ci right 3.204897e-01	k: 44526	n:140000
NT5DC3   140000 perm   31 sec   (4448 perm/sec)   p_kst 3.180429e-01   p_cons 4.114286e-03   p_joint 4.835714e-03

Joint ci ratio: 1.263768e-01	ci left: 5.970393e-03	ci right 6.782198e-03	k: 955	n:150000
Cons ci ratio: 1.578737e-01	ci left: 3.770103e-03	ci right 4.422629e-03	k: 613	n:150000
KS ci ratio: 1.482469e-02	ci left: 3.155703e-01	ci right 3.202901e-01	k: 47689	n:150000
NT5DC3   150000 perm   34 sec   (4384 perm/sec)   p_kst 3.179267e-01   p_cons 4.086667e-03   p_joint 6.366667e-03

Joint ci ratio: 1.227724e-01	ci left: 5.942387e-03	ci right 6.725663e-03	k: 1012	n:160000
Cons ci ratio: 1.528528e-01	ci left: 3.780762e-03	ci right 4.412416e-03	k: 654	n:160000
KS ci ratio: 1.436416e-02	ci left: 3.153378e-01	ci right 3.199063e-01	k: 50819	n:160000
NT5DC3   160000 perm   37 sec   (4326 perm/sec)   p_kst 3.176188e-01   p_cons 4.087500e-03   p_joint 6.325000e-03

Joint ci ratio: 1.187913e-01	ci left: 5.986464e-03	ci right 6.748165e-03	k: 1081	n:170000
Cons ci ratio: 1.488200e-01	ci left: 3.762134e-03	ci right 4.372617e-03	k: 690	n:170000
KS ci ratio: 1.392342e-02	ci left: 3.157747e-01	ci right 3.202080e-01	k: 54058	n:170000
NT5DC3   170000 perm   40 sec   (4269 perm/sec)   p_kst 3.179882e-01   p_cons 4.058824e-03   p_joint 6.358824e-03

Joint ci ratio: 1.321973e-01	ci left: 4.539649e-03	ci right 5.187568e-03	k: 874	n:180000
Cons ci ratio: 1.442955e-01	ci left: 3.788612e-03	ci right 4.383090e-03	k: 734	n:180000
KS ci ratio: 1.353199e-02	ci left: 3.158100e-01	ci right 3.201181e-01	k: 57233	n:180000
NT5DC3   180000 perm   43 sec   (4211 perm/sec)   p_kst 3.179611e-01   p_cons 4.077778e-03   p_joint 4.855556e-03

Joint ci ratio: 1.332899e-01	ci left: 4.229437e-03	ci right 4.838463e-03	k: 860	n:190000
Cons ci ratio: 1.411643e-01	ci left: 3.756689e-03	ci right 4.332289e-03	k: 767	n:190000
KS ci ratio: 1.317198e-02	ci left: 3.158379e-01	ci right 3.200309e-01	k: 60407	n:190000
NT5DC3   190000 perm   46 sec   (4147 perm/sec)   p_kst 3.179316e-01   p_cons 4.036842e-03   p_joint 4.526316e-03

Joint ci ratio: 1.258187e-01	ci left: 4.526005e-03	ci right 5.138483e-03	k: 965	n:200000
Cons ci ratio: 1.372852e-01	ci left: 3.781195e-03	ci right 4.343329e-03	k: 811	n:200000
KS ci ratio: 1.282579e-02	ci left: 3.163185e-01	ci right 3.204067e-01	k: 63672	n:200000
NT5DC3   200000 perm   49 sec   (4091 perm/sec)   p_kst 3.183600e-01   p_cons 4.055000e-03   p_joint 4.825000e-03

Joint ci ratio: 1.267593e-01	ci left: 4.245881e-03	ci right 4.825069e-03	k: 951	n:210000
Cons ci ratio: 1.345003e-01	ci left: 3.757536e-03	ci right 4.303914e-03	k: 845	n:210000
KS ci ratio: 1.251720e-02	ci left: 3.163506e-01	ci right 3.203401e-01	k: 66852	n:210000
NT5DC3   210000 perm   52 sec   (4037 perm/sec)   p_kst 3.183429e-01   p_cons 4.023810e-03   p_joint 4.528571e-03

Joint ci ratio: 1.198841e-01	ci left: 4.546324e-03	ci right 5.130476e-03	k: 1063	n:220000
Cons ci ratio: 1.311323e-01	ci left: 3.780096e-03	ci right 4.314919e-03	k: 889	n:220000
KS ci ratio: 1.222012e-02	ci left: 3.167258e-01	ci right 3.206245e-01	k: 70108	n:220000
NT5DC3   220000 perm   55 sec   (3985 perm/sec)   p_kst 3.186727e-01   p_cons 4.040909e-03   p_joint 4.831818e-03

Joint ci ratio: 8.527285e-02	ci left: 8.715943e-03	ci right 9.496503e-03	k: 2093	n:230000
Cons ci ratio: 1.284897e-01	ci left: 3.771389e-03	ci right 4.293406e-03	k: 926	n:230000
KS ci ratio: 1.195484e-02	ci left: 3.166482e-01	ci right 3.204607e-01	k: 73267	n:230000
NT5DC3   230000 perm   58 sec   (3934 perm/sec)   p_kst 3.185522e-01   p_cons 4.026087e-03   p_joint 9.100000e-03

Joint ci ratio: 8.349756e-02	ci left: 8.719866e-03	ci right 9.483727e-03	k: 2183	n:240000
Cons ci ratio: 1.257390e-01	ci left: 3.779650e-03	ci right 4.290776e-03	k: 967	n:240000
KS ci ratio: 1.170825e-02	ci left: 3.164989e-01	ci right 3.202305e-01	k: 76407	n:240000
NT5DC3   240000 perm   62 sec   (3888 perm/sec)   p_kst 3.183625e-01   p_cons 4.029167e-03   p_joint 9.095833e-03

Joint ci ratio: 1.160912e-01	ci left: 4.276351e-03	ci right 4.807237e-03	k: 1134	n:250000
Cons ci ratio: 1.230964e-01	ci left: 3.791237e-03	ci right 4.292369e-03	k: 1009	n:250000
KS ci ratio: 1.147134e-02	ci left: 3.165500e-01	ci right 3.202062e-01	k: 79594	n:250000
NT5DC3   250000 perm   65 sec   (3840 perm/sec)   p_kst 3.183760e-01   p_cons 4.036000e-03   p_joint 4.536000e-03

Joint ci ratio: 1.134704e-01	ci left: 4.309874e-03	ci right 4.832034e-03	k: 1187	n:260000
Cons ci ratio: 1.203270e-01	ci left: 3.820689e-03	ci right 4.313544e-03	k: 1056	n:260000
KS ci ratio: 1.124477e-02	ci left: 3.167323e-01	ci right 3.203179e-01	k: 82816	n:260000
NT5DC3   260000 perm   69 sec   (3794 perm/sec)   p_kst 3.185231e-01   p_cons 4.061538e-03   p_joint 4.565385e-03

Joint ci ratio: 1.111996e-01	ci left: 4.326633e-03	ci right 4.839646e-03	k: 1236	n:270000
Cons ci ratio: 1.177901e-01	ci left: 3.844481e-03	ci right 4.329222e-03	k: 1102	n:270000
KS ci ratio: 1.103036e-02	ci left: 3.169314e-01	ci right 3.204503e-01	k: 86046	n:270000
NT5DC3   270000 perm   72 sec   (3747 perm/sec)   p_kst 3.186889e-01   p_cons 4.081481e-03   p_joint 4.577778e-03

Joint ci ratio: 1.086364e-01	ci left: 4.377038e-03	ci right 4.883299e-03	k: 1295	n:280000
Cons ci ratio: 1.150057e-01	ci left: 3.894427e-03	ci right 4.373069e-03	k: 1156	n:280000
KS ci ratio: 1.083596e-02	ci left: 3.167887e-01	ci right 3.202436e-01	k: 89184	n:280000
NT5DC3   280000 perm   76 sec   (3696 perm/sec)   p_kst 3.185143e-01   p_cons 4.128571e-03   p_joint 4.625000e-03

Joint ci ratio: 1.070392e-01	ci left: 4.356959e-03	ci right 4.853021e-03	k: 1334	n:290000
Cons ci ratio: 1.134015e-01	ci left: 3.870676e-03	ci right 4.339320e-03	k: 1189	n:290000
KS ci ratio: 1.065140e-02	ci left: 3.166598e-01	ci right 3.200542e-01	k: 92323	n:290000
NT5DC3   290000 perm   80 sec   (3646 perm/sec)   p_kst 3.183552e-01   p_cons 4.100000e-03   p_joint 4.600000e-03

Joint ci ratio: 1.054333e-01	ci left: 4.344760e-03	ci right 4.831553e-03	k: 1375	n:300000
Cons ci ratio: 1.118168e-01	ci left: 3.851792e-03	ci right 4.311203e-03	k: 1223	n:300000
KS ci ratio: 1.047741e-02	ci left: 3.164801e-01	ci right 3.198167e-01	k: 95444	n:300000
NT5DC3   300000 perm   83 sec   (3601 perm/sec)   p_kst 3.181467e-01   p_cons 4.076667e-03   p_joint 4.583333e-03

Joint ci ratio: 1.038240e-01	ci left: 4.339686e-03	ci right 4.818035e-03	k: 1418	n:310000
Cons ci ratio: 1.100334e-01	ci left: 3.852993e-03	ci right 4.304742e-03	k: 1263	n:310000
KS ci ratio: 1.031029e-02	ci left: 3.163704e-01	ci right 3.196524e-01	k: 98583	n:310000
NT5DC3   310000 perm   87 sec   (3558 perm/sec)   p_kst 3.180097e-01   p_cons 4.074194e-03   p_joint 4.574194e-03

Joint ci ratio: 1.026040e-01	ci left: 4.307574e-03	ci right 4.776468e-03	k: 1452	n:320000
Cons ci ratio: 1.087945e-01	ci left: 3.820729e-03	ci right 4.263327e-03	k: 1292	n:320000
KS ci ratio: 1.015114e-02	ci left: 3.162586e-01	ci right 3.194884e-01	k: 101719	n:320000
NT5DC3   320000 perm   91 sec   (3508 perm/sec)   p_kst 3.178719e-01   p_cons 4.037500e-03   p_joint 4.537500e-03

Joint ci ratio: 1.008485e-01	ci left: 4.327657e-03	ci right 4.790200e-03	k: 1503	n:330000
Cons ci ratio: 1.070290e-01	ci left: 3.831736e-03	ci right 4.267953e-03	k: 1335	n:330000
KS ci ratio: 9.999209e-03	ci left: 3.161509e-01	ci right 3.193311e-01	k: 104854	n:330000
NT5DC3   330000 perm   95 sec   (3464 perm/sec)   p_kst 3.177394e-01   p_cons 4.045455e-03   p_joint 4.554545e-03

Joint ci ratio: 9.946976e-02	ci left: 4.320808e-03	ci right 4.775936e-03	k: 1545	n:340000
Cons ci ratio: 1.055389e-01	ci left: 3.827831e-03	ci right 4.257160e-03	k: 1373	n:340000
KS ci ratio: 9.852295e-03	ci left: 3.161204e-01	ci right 3.192533e-01	k: 108013	n:340000
NT5DC3   340000 perm   99 sec   (3426 perm/sec)   p_kst 3.176853e-01   p_cons 4.038235e-03   p_joint 4.544118e-03

Joint ci ratio: 9.796030e-02	ci left: 4.331114e-03	ci right 4.780007e-03	k: 1593	n:350000
Cons ci ratio: 1.039986e-01	ci left: 3.832538e-03	ci right 4.255738e-03	k: 1414	n:350000
KS ci ratio: 9.712249e-03	ci left: 3.160663e-01	ci right 3.191538e-01	k: 111163	n:350000
NT5DC3   350000 perm   103 sec   (3387 perm/sec)   p_kst 3.176086e-01   p_cons 4.040000e-03   p_joint 4.551429e-03

Joint ci ratio: 9.672487e-02	ci left: 4.321920e-03	ci right 4.763891e-03	k: 1634	n:360000
Cons ci ratio: 1.028791e-01	ci left: 3.809960e-03	ci right 4.225864e-03	k: 1445	n:360000
KS ci ratio: 9.575248e-03	ci left: 3.161404e-01	ci right 3.191848e-01	k: 114358	n:360000
NT5DC3   360000 perm   107 sec   (3351 perm/sec)   p_kst 3.176611e-01   p_cons 4.013889e-03   p_joint 4.538889e-03

Joint ci ratio: 9.510842e-02	ci left: 4.352836e-03	ci right 4.790114e-03	k: 1690	n:370000
Cons ci ratio: 1.012119e-01	ci left: 3.833409e-03	ci right 4.244688e-03	k: 1493	n:370000
KS ci ratio: 9.442943e-03	ci left: 3.162539e-01	ci right 3.192571e-01	k: 117569	n:370000
NT5DC3   370000 perm   112 sec   (3314 perm/sec)   p_kst 3.177541e-01   p_cons 4.035135e-03   p_joint 4.567568e-03

Joint ci ratio: 9.384059e-02	ci left: 4.356480e-03	ci right 4.787970e-03	k: 1736	n:380000
Cons ci ratio: 9.978574e-02	ci left: 3.842844e-03	ci right 4.248986e-03	k: 1536	n:380000
KS ci ratio: 9.326445e-03	ci left: 3.158755e-01	ci right 3.188378e-01	k: 120595	n:380000
NT5DC3   380000 perm   116 sec   (3277 perm/sec)   p_kst 3.173553e-01   p_cons 4.042105e-03   p_joint 4.568421e-03

Outputting figure to mutsig2_images.part000000000117/NT5DC3.2_1703_380000_0.31736_0.0040421_0.0045684.png
                gene_name: NT5DC3
               theta_stop: 0.100 
                    nperm: 380000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.0040 
      ci_cons_bounds_left: 0.0038 
     ci_cons_bounds_right: 0.0042 
                  p_joint: 0.0046 
     ci_joint_bounds_left: 0.0044 
    ci_joint_bounds_right: 0.0048 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000117
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 117 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1702>
Subject: Job 9894042: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1702>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000118> was used as the working directory.
Started at Sat Oct  6 00:21:28 2012
Results reported at Sat Oct  6 00:42:58 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000118.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000118.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 118  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000118.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1341.87 sec.
    Max Memory :      3508 MB
    Max Swap   :      5926 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
118
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 118
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 118: processing genes 10549 - 10638
Calculating significance of each gene.
Using projection method.
10549	NTHL1	7.624757e-01
10550	NTM	3.567504e-03
10551	NTN1	1.797477e-01
10552	NTN3	1
10553	NTN4	7.282671e-02
10554	NTN5	1
10555	NTNG1	2.425619e-01
10556	NTNG2	6.545274e-01
10557	NTRK1	1.630381e-01
10558	NTRK2	7.156184e-01
10559	NTRK3	3.374261e-02
10560	NTS	2.410636e-01
10561	NTSR1	8.793936e-01
10562	NTSR2	3.017031e-02
10563	NUAK1	3.064116e-01
10564	NUAK2	6.768868e-01
10565	NUB1	5.444990e-01
10566	NUBP1	3.581156e-01
10567	NUBP2	1
10568	NUBPL	1
10569	NUCB1	1.515905e-01
10570	NUCB2	6.000211e-01
10571	NUCKS1	6.856447e-01
10572	NUDC	5.829287e-01
10573	NUDCD1	5.176204e-01
10574	NUDCD2	1
10575	NUDCD3	8.310823e-01
10576	NUDT1	6.001797e-01
10577	NUDT10	1
10578	NUDT11	1
10579	NUDT12	4.132060e-01
10580	NUDT13	4.976884e-01
10581	NUDT14	1
10582	NUDT15	2.439414e-01
10583	NUDT16	5.419021e-01
10584	NUDT16L1	4.880915e-01
10585	NUDT17	7.146232e-01
10586	NUDT18	1
10587	NUDT19	8.514983e-01
10588	NUDT2	1
10589	NUDT21	6.360393e-01
10590	NUDT22	1
10591	NUDT3	1
10592	NUDT4	1
10593	NUDT5	1
10594	NUDT6	7.236012e-01
10595	NUDT7	3.605637e-01
10596	NUDT8	1
10597	NUDT9	4.150049e-01
10598	NUF2	2.244970e-01
10599	NUFIP1	7.570149e-01
10600	NUFIP2	8.051743e-01
10601	NUMA1	6.585711e-01
10602	NUMB	7.859009e-01
10603	NUMBL	4.768321e-01
10604	NUP107	1.966110e-02
10605	NUP133	4.609176e-01
10606	NUP153	8.613136e-01
10607	NUP155	9.597895e-01
10608	NUP160	8.311833e-01
10609	NUP188	7.410043e-01
10610	NUP205	1.709436e-01
10611	NUP210	9.922863e-01
10612	NUP210L	8.304326e-01
10613	NUP214	9.796409e-01
10614	NUP35	1.994970e-01
10615	NUP37	4.345695e-01
10616	NUP43	3.016710e-01
10617	NUP50	1
10618	NUP54	7.727218e-01
10619	NUP62	3.416582e-01
10620	NUP62CL	1
10621	NUP85	2.736455e-01
10622	NUP88	5.904802e-01
10623	NUP93	5.983854e-01
10624	NUP98	5.870701e-01
10625	NUPL1	8.103398e-01
10626	NUPL2	2.002527e-01
10627	NUPR1	5.026901e-01
10628	NUS1	1.015428e-01
10629	NUSAP1	1
10630	NUTF2	3.540495e-01
10631	NVL	2.556400e-01
10632	NWD1	1.115517e-01
10633	NXF1	1.135122e-01
10634	NXF3	7.445223e-01
10635	NXF5	9.921539e-05
10636	NXN	7.419039e-01
10637	NXNL1	7.258949e-01
10638	NXNL2	1
Done

Running MutSig 2:
Scatter job 118: processing genes 10549 - 10638
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
NWD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.689464e-02	ci left: 3.126467e-01	ci right 3.310572e-01	k: 3218	n:10000
Cons ci ratio: 5.925716e-02	ci left: 2.952901e-01	ci right 3.134240e-01	k: 3043	n:10000
KS ci ratio: 5.953818e-02	ci left: 2.933074e-01	ci right 3.114079e-01	k: 3023	n:10000
NWD1   10000 perm   2 sec   (4387 perm/sec)   p_kst 3.023000e-01   p_cons 3.043000e-01   p_joint 3.218000e-01

Outputting figure to mutsig2_images.part000000000118/NWD1.13_4354_10000_0.3023_0.3043_0.3218.png
                gene_name: NWD1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 2 percent done.
NTRK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.333872e-02	ci left: 3.412425e-01	ci right 3.600446e-01	k: 3506	n:10000
Cons ci ratio: 1.603451e-02	ci left: 8.496789e-01	ci right 8.635127e-01	k: 8567	n:10000
KS ci ratio: 7.481309e-02	ci left: 2.072778e-01	ci right 2.234884e-01	k: 2153	n:10000
NTRK3   10000 perm   2 sec   (4991 perm/sec)   p_kst 2.153000e-01   p_cons 8.567000e-01   p_joint 3.506000e-01

Outputting figure to mutsig2_images.part000000000118/NTRK3.11_2854_10000_0.2153_0.8567_0.3506.png
                gene_name: NTRK3
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 4 percent done.
NUP107
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.521658e-02	ci left: 4.192713e-01	ci right 4.387700e-01	k: 4290	n:10000
Cons ci ratio: 8.167954e-02	ci left: 1.794983e-01	ci right 1.948844e-01	k: 1871	n:10000
KS ci ratio: 3.299920e-02	ci left: 5.754698e-01	ci right 5.948805e-01	k: 5852	n:10000
NUP107   10000 perm   2 sec   (4465 perm/sec)   p_kst 5.852000e-01   p_cons 1.871000e-01   p_joint 4.290000e-01

Outputting figure to mutsig2_images.part000000000118/NUP107.11_2890_10000_0.5852_0.1871_0.429.png
                gene_name: NUP107
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 5 percent done.
NUP205
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.117623e-02	ci left: 7.657748e-01	ci right 7.822653e-01	k: 7741	n:10000
Cons ci ratio: 3.469341e-02	ci left: 5.509062e-01	ci right 5.704585e-01	k: 5607	n:10000
KS ci ratio: 2.681507e-02	ci left: 6.719646e-01	ci right 6.903298e-01	k: 6812	n:10000
NUP205   10000 perm   2 sec   (4138 perm/sec)   p_kst 6.812000e-01   p_cons 5.607000e-01   p_joint 7.741000e-01

Outputting figure to mutsig2_images.part000000000118/NUP205.11_6211_10000_0.6812_0.5607_0.7741.png
                gene_name: NUP205
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 7 percent done.
NUMA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.067928e-02	ci left: 7.740800e-01	ci right 7.903553e-01	k: 7823	n:10000
Cons ci ratio: 4.683115e-02	ci left: 4.022303e-01	ci right 4.216210e-01	k: 4119	n:10000
KS ci ratio: 7.724826e-03	ci left: 9.587987e-01	ci right 9.663288e-01	k: 9627	n:10000
NUMA1   10000 perm   2 sec   (4188 perm/sec)   p_kst 9.627000e-01   p_cons 4.119000e-01   p_joint 7.823000e-01

Outputting figure to mutsig2_images.part000000000118/NUMA1.10_6448_10000_0.9627_0.4119_0.7823.png
                gene_name: NUMA1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 9 percent done.
NUP210L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.357136e-01	ci left: 7.175179e-02	ci right 8.229618e-02	k: 769	n:10000
Cons ci ratio: 1.645643e-02	ci left: 8.430535e-01	ci right 8.571419e-01	k: 8502	n:10000
KS ci ratio: 3.103695e-01	ci left: 1.326304e-02	ci right 1.822489e-02	k: 156	n:10000
NUP210L   10000 perm   2 sec   (4165 perm/sec)   p_kst 1.560000e-02   p_cons 8.502000e-01   p_joint 7.690000e-02

Joint ci ratio: 1.200010e-01	ci left: 4.760289e-02	ci right 5.372858e-02	k: 1012	n:20000
Cons ci ratio: 1.170870e-02	ci left: 8.435568e-01	ci right 8.535417e-01	k: 16972	n:20000
KS ci ratio: 2.212663e-01	ci left: 1.373916e-02	ci right 1.720379e-02	k: 308	n:20000
NUP210L   20000 perm   5 sec   (3797 perm/sec)   p_kst 1.540000e-02   p_cons 8.486000e-01   p_joint 5.060000e-02

Joint ci ratio: 1.138195e-01	ci left: 3.586462e-02	ci right 4.022542e-02	k: 1140	n:30000
Cons ci ratio: 9.585948e-03	ci left: 8.437859e-01	ci right 8.519466e-01	k: 25437	n:30000
KS ci ratio: 1.863617e-01	ci left: 1.317781e-02	ci right 1.591739e-02	k: 435	n:30000
NUP210L   30000 perm   8 sec   (3655 perm/sec)   p_kst 1.450000e-02   p_cons 8.479000e-01   p_joint 3.800000e-02

Joint ci ratio: 9.524641e-02	ci left: 3.868680e-02	ci right 4.258024e-02	k: 1624	n:40000
Cons ci ratio: 8.322499e-03	ci left: 8.436869e-01	ci right 8.507627e-01	k: 33890	n:40000
KS ci ratio: 1.611604e-01	ci left: 1.339939e-02	ci right 1.577185e-02	k: 582	n:40000
NUP210L   40000 perm   11 sec   (3597 perm/sec)   p_kst 1.455000e-02   p_cons 8.472500e-01   p_joint 4.060000e-02

Joint ci ratio: 9.030058e-02	ci left: 3.467756e-02	ci right 3.797656e-02	k: 1815	n:50000
Cons ci ratio: 7.160700e-03	ci left: 8.539210e-01	ci right 8.600775e-01	k: 42851	n:50000
KS ci ratio: 1.448288e-01	ci left: 1.339332e-02	ci right 1.550360e-02	k: 721	n:50000
NUP210L   50000 perm   14 sec   (3541 perm/sec)   p_kst 1.442000e-02   p_cons 8.570200e-01   p_joint 3.630000e-02

Joint ci ratio: 6.978088e-02	ci left: 4.822040e-02	ci right 5.172329e-02	k: 2997	n:60000
Cons ci ratio: 6.515948e-03	ci left: 8.549798e-01	ci right 8.605856e-01	k: 51468	n:60000
KS ci ratio: 1.315493e-01	ci left: 1.362320e-02	ci right 1.555750e-02	k: 874	n:60000
NUP210L   60000 perm   17 sec   (3484 perm/sec)   p_kst 1.456667e-02   p_cons 8.578000e-01   p_joint 4.995000e-02

Joint ci ratio: 7.122989e-02	ci left: 3.999229e-02	ci right 4.296015e-02	k: 2902	n:70000
Cons ci ratio: 6.043168e-03	ci left: 8.547590e-01	ci right 8.599542e-01	k: 60016	n:70000
KS ci ratio: 1.217205e-01	ci left: 1.371061e-02	ci right 1.550138e-02	k: 1021	n:70000
NUP210L   70000 perm   20 sec   (3433 perm/sec)   p_kst 1.458571e-02   p_cons 8.573714e-01   p_joint 4.145714e-02

Joint ci ratio: 7.027480e-02	ci left: 3.612032e-02	ci right 3.876336e-02	k: 2994	n:80000
Cons ci ratio: 5.880545e-03	ci left: 8.449270e-01	ci right 8.499227e-01	k: 67795	n:80000
KS ci ratio: 1.137604e-01	ci left: 1.379237e-02	ci right 1.546810e-02	k: 1169	n:80000
NUP210L   80000 perm   24 sec   (3381 perm/sec)   p_kst 1.461250e-02   p_cons 8.474375e-01   p_joint 3.742500e-02

Joint ci ratio: 6.601569e-02	ci left: 3.645405e-02	ci right 3.895364e-02	k: 3392	n:90000
Cons ci ratio: 5.545026e-03	ci left: 8.450339e-01	ci right 8.497437e-01	k: 76266	n:90000
KS ci ratio: 1.047873e-01	ci left: 1.450819e-02	ci right 1.612327e-02	k: 1377	n:90000
NUP210L   90000 perm   27 sec   (3333 perm/sec)   p_kst 1.530000e-02   p_cons 8.474000e-01   p_joint 3.768889e-02

Joint ci ratio: 6.185630e-02	ci left: 3.741443e-02	ci right 3.981243e-02	k: 3860	n:100000
Cons ci ratio: 5.255584e-03	ci left: 8.453976e-01	ci right 8.498622e-01	k: 84764	n:100000
KS ci ratio: 1.001132e-01	ci left: 1.434349e-02	ci right 1.586482e-02	k: 1509	n:100000
NUP210L   100000 perm   30 sec   (3289 perm/sec)   p_kst 1.509000e-02   p_cons 8.476400e-01   p_joint 3.860000e-02

Joint ci ratio: 5.964627e-02	ci left: 3.665376e-02	ci right 3.891615e-02	k: 4155	n:110000
Cons ci ratio: 5.009304e-03	ci left: 8.455904e-01	ci right 8.498458e-01	k: 93250	n:110000
KS ci ratio: 9.510606e-02	ci left: 1.448524e-02	ci right 1.594048e-02	k: 1672	n:110000
NUP210L   110000 perm   34 sec   (3239 perm/sec)   p_kst 1.520000e-02   p_cons 8.477273e-01   p_joint 3.777273e-02

Outputting figure to mutsig2_images.part000000000118/NUP210L.10_5827_110000_0.0152_0.84773_0.037773.png
                gene_name: NUP210L
               theta_stop: 0.095 
                    nperm: 110000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.039 

Current progress: 11 percent done.
NUP98
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.860600e-02	ci left: 3.844050e-01	ci right 4.036568e-01	k: 3940	n:10000
Cons ci ratio: 4.037980e-02	ci left: 4.752601e-01	ci right 4.949486e-01	k: 4851	n:10000
KS ci ratio: 6.707253e-02	ci left: 2.459853e-01	ci right 2.631579e-01	k: 2545	n:10000
NUP98   10000 perm   3 sec   (3896 perm/sec)   p_kst 2.545000e-01   p_cons 4.851000e-01   p_joint 3.940000e-01

Outputting figure to mutsig2_images.part000000000118/NUP98.10_5603_10000_0.2545_0.4851_0.394.png
                gene_name: NUP98
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 12 percent done.
NUF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.309443e-02	ci left: 5.740655e-01	ci right 5.934856e-01	k: 5838	n:10000
Cons ci ratio: 3.402236e-02	ci left: 5.605282e-01	ci right 5.800308e-01	k: 5703	n:10000
KS ci ratio: 4.546661e-02	ci left: 4.165799e-01	ci right 4.360631e-01	k: 4263	n:10000
NUF2   10000 perm   2 sec   (5494 perm/sec)   p_kst 4.263000e-01   p_cons 5.703000e-01   p_joint 5.838000e-01

Outputting figure to mutsig2_images.part000000000118/NUF2.9_1447_10000_0.4263_0.5703_0.5838.png
                gene_name: NUF2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 14 percent done.
NUP188
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.422396e-02	ci left: 8.772546e-01	ci right 8.899209e-01	k: 8837	n:10000
Cons ci ratio: 2.514283e-02	ci left: 6.994831e-01	ci right 7.173954e-01	k: 7085	n:10000
KS ci ratio: 3.770962e-02	ci left: 5.094531e-01	ci right 5.291357e-01	k: 5193	n:10000
NUP188   10000 perm   2 sec   (4178 perm/sec)   p_kst 5.193000e-01   p_cons 7.085000e-01   p_joint 8.837000e-01

Outputting figure to mutsig2_images.part000000000118/NUP188.8_5426_10000_0.5193_0.7085_0.8837.png
                gene_name: NUP188
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 16 percent done.
NTM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.944842e-02	ci left: 6.296981e-01	ci right 6.486207e-01	k: 6392	n:10000
Cons ci ratio: 4.585912e-02	ci left: 4.123937e-01	ci right 4.318517e-01	k: 4221	n:10000
KS ci ratio: 2.300583e-02	ci left: 7.351239e-01	ci right 7.523339e-01	k: 7438	n:10000
NTM   10000 perm   2 sec   (5951 perm/sec)   p_kst 7.438000e-01   p_cons 4.221000e-01   p_joint 6.392000e-01

Outputting figure to mutsig2_images.part000000000118/NTM.7_1203_10000_0.7438_0.4221_0.6392.png
                gene_name: NTM
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 18 percent done.
NXF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.248534e-02	ci left: 5.830946e-01	ci right 6.024514e-01	k: 5928	n:10000
Cons ci ratio: 5.349131e-02	ci left: 3.399509e-01	ci right 3.587369e-01	k: 3493	n:10000
KS ci ratio: 3.616784e-02	ci left: 5.302713e-01	ci right 5.499054e-01	k: 5401	n:10000
NXF1   10000 perm   2 sec   (5002 perm/sec)   p_kst 5.401000e-01   p_cons 3.493000e-01   p_joint 5.928000e-01

Outputting figure to mutsig2_images.part000000000118/NXF1.7_1999_10000_0.5401_0.3493_0.5928.png
                gene_name: NXF1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 20 percent done.
NXF5
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.090877e-02	ci left: 4.687666e-01	ci right 4.884459e-01	k: 4786	n:10000
KS ci ratio: 1.701452e-02	ci left: 8.341928e-01	ci right 8.486078e-01	k: 8415	n:10000
NXF5   10000 perm   2 sec   (5624 perm/sec)   p_kst 8.415000e-01   p_cons 4.786000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NXF5.5_1154_10000_0.8415_0.4786_1.png
                gene_name: NXF5
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
NTN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.552480e-02	ci left: 5.391843e-01	ci right 5.587872e-01	k: 5490	n:10000
Cons ci ratio: 4.275680e-02	ci left: 4.468010e-01	ci right 4.664243e-01	k: 4566	n:10000
KS ci ratio: 3.692423e-02	ci left: 5.199601e-01	ci right 5.396225e-01	k: 5298	n:10000
NTN4   10000 perm   2 sec   (5557 perm/sec)   p_kst 5.298000e-01   p_cons 4.566000e-01   p_joint 5.490000e-01

Outputting figure to mutsig2_images.part000000000118/NTN4.6_1927_10000_0.5298_0.4566_0.549.png
                gene_name: NTN4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 23 percent done.
NTRK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.681687e-02	ci left: 1.986025e-01	ci right 2.145687e-01	k: 2065	n:10000
Cons ci ratio: 7.559642e-02	ci left: 2.038267e-01	ci right 2.199415e-01	k: 2118	n:10000
KS ci ratio: 1.283610e-01	ci left: 7.979957e-02	ci right 9.084340e-02	k: 852	n:10000
NTRK1   10000 perm   2 sec   (5329 perm/sec)   p_kst 8.520000e-02   p_cons 2.118000e-01   p_joint 2.065000e-01

Joint ci ratio: 6.766256e-02	ci left: 1.388162e-01	ci right 1.485876e-01	k: 2873	n:20000
Cons ci ratio: 5.393203e-02	ci left: 2.032836e-01	ci right 2.146011e-01	k: 4178	n:20000
KS ci ratio: 9.067967e-02	ci left: 8.156220e-02	ci right 8.935881e-02	k: 1708	n:20000
NTRK1   20000 perm   4 sec   (4780 perm/sec)   p_kst 8.540000e-02   p_cons 2.089000e-01   p_joint 1.436500e-01

Outputting figure to mutsig2_images.part000000000118/NTRK1.6_2589_20000_0.0854_0.2089_0.14365.png
                gene_name: NTRK1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 25 percent done.
NUAK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.481713e-02	ci left: 2.590407e-01	ci right 2.764948e-01	k: 2677	n:10000
Cons ci ratio: 5.097653e-02	ci left: 3.620179e-01	ci right 3.810570e-01	k: 3715	n:10000
KS ci ratio: 8.723287e-02	ci left: 1.606216e-01	ci right 1.753724e-01	k: 1679	n:10000
NUAK1   10000 perm   2 sec   (5414 perm/sec)   p_kst 1.679000e-01   p_cons 3.715000e-01   p_joint 2.677000e-01

Outputting figure to mutsig2_images.part000000000118/NUAK1.6_2014_10000_0.1679_0.3715_0.2677.png
                gene_name: NUAK1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 27 percent done.
NUP133
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.360353e-02	ci left: 7.251213e-01	ci right 7.425423e-01	k: 7339	n:10000
Cons ci ratio: 5.275826e-02	ci left: 3.462109e-01	ci right 3.650732e-01	k: 3556	n:10000
KS ci ratio: 2.088549e-02	ci left: 7.706358e-01	ci right 7.870015e-01	k: 7789	n:10000
NUP133   10000 perm   2 sec   (4894 perm/sec)   p_kst 7.789000e-01   p_cons 3.556000e-01   p_joint 7.339000e-01

Outputting figure to mutsig2_images.part000000000118/NUP133.6_3575_10000_0.7789_0.3556_0.7339.png
                gene_name: NUP133
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 29 percent done.
NUP214
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.642498e-02	ci left: 2.496437e-01	ci right 2.668973e-01	k: 2582	n:10000
Cons ci ratio: 1.204255e-01	ci left: 9.000254e-02	ci right 1.016341e-01	k: 957	n:10000
KS ci ratio: 3.525308e-02	ci left: 5.429908e-01	ci right 5.625785e-01	k: 5528	n:10000
NUP214   10000 perm   2 sec   (4475 perm/sec)   p_kst 5.528000e-01   p_cons 9.570000e-02   p_joint 2.582000e-01

Joint ci ratio: 5.812972e-02	ci left: 1.798374e-01	ci right 1.906543e-01	k: 3704	n:20000
Cons ci ratio: 8.976383e-02	ci left: 8.312927e-02	ci right 9.099126e-02	k: 1740	n:20000
KS ci ratio: 2.504294e-02	ci left: 5.436241e-01	ci right 5.574612e-01	k: 11011	n:20000
NUP214   20000 perm   5 sec   (4046 perm/sec)   p_kst 5.505500e-01   p_cons 8.700000e-02   p_joint 1.852000e-01

Outputting figure to mutsig2_images.part000000000118/NUP214.6_6417_20000_0.55055_0.087_0.1852.png
                gene_name: NUP214
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 30 percent done.
NVL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.910346e-02	ci left: 8.002425e-01	ci right 8.157777e-01	k: 8081	n:10000
Cons ci ratio: 1.825522e-02	ci left: 8.141562e-01	ci right 8.292559e-01	k: 8218	n:10000
KS ci ratio: 4.877944e-02	ci left: 3.827127e-01	ci right 4.019500e-01	k: 3923	n:10000
NVL   10000 perm   2 sec   (5400 perm/sec)   p_kst 3.923000e-01   p_cons 8.218000e-01   p_joint 8.081000e-01

Outputting figure to mutsig2_images.part000000000118/NVL.6_2663_10000_0.3923_0.8218_0.8081.png
                gene_name: NVL
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 32 percent done.
NTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
Cons ci ratio: 1.123029e-01	ci left: 1.024689e-01	ci right 1.147601e-01	k: 1085	n:10000
KS ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
NTN1   10000 perm   2 sec   (5637 perm/sec)   p_kst 9.800000e-03   p_cons 1.085000e-01   p_joint 1.170000e-02

Joint ci ratio: 2.177152e-01	ci left: 1.421204e-02	ci right 1.773072e-02	k: 318	n:20000
Cons ci ratio: 7.840294e-02	ci left: 1.067273e-01	ci right 1.154861e-01	k: 2221	n:20000
KS ci ratio: 2.876468e-01	ci left: 7.877125e-03	ci right 1.056846e-02	k: 183	n:20000
NTN1   20000 perm   4 sec   (4971 perm/sec)   p_kst 9.150000e-03   p_cons 1.110500e-01   p_joint 1.590000e-02

Joint ci ratio: 2.214841e-01	ci left: 9.188445e-03	ci right 1.150785e-02	k: 309	n:30000
Cons ci ratio: 6.456221e-02	ci left: 1.058891e-01	ci right 1.129867e-01	k: 3282	n:30000
KS ci ratio: 2.415802e-01	ci left: 7.648923e-03	ci right 9.781191e-03	k: 260	n:30000
NTN1   30000 perm   6 sec   (4728 perm/sec)   p_kst 8.666667e-03   p_cons 1.094000e-01   p_joint 1.030000e-02

Joint ci ratio: 1.628698e-01	ci left: 1.311139e-02	ci right 1.545990e-02	k: 570	n:40000
Cons ci ratio: 5.582918e-02	ci left: 1.066533e-01	ci right 1.128035e-01	k: 4388	n:40000
KS ci ratio: 2.036790e-01	ci left: 8.240160e-03	ci right 1.013212e-02	k: 366	n:40000
NTN1   40000 perm   9 sec   (4501 perm/sec)   p_kst 9.150000e-03   p_cons 1.097000e-01   p_joint 1.425000e-02

Joint ci ratio: 1.659211e-01	ci left: 1.012342e-02	ci right 1.197401e-02	k: 551	n:50000
Cons ci ratio: 4.977361e-02	ci left: 1.076064e-01	ci right 1.131189e-01	k: 5517	n:50000
KS ci ratio: 1.758539e-01	ci left: 8.974228e-03	ci right 1.072338e-02	k: 491	n:50000
NTN1   50000 perm   11 sec   (4428 perm/sec)   p_kst 9.820000e-03   p_cons 1.103400e-01   p_joint 1.102000e-02

Joint ci ratio: 1.801051e-01	ci left: 7.127562e-03	ci right 8.553994e-03	k: 469	n:60000
Cons ci ratio: 4.551656e-02	ci left: 1.075070e-01	ci right 1.125308e-01	k: 6600	n:60000
KS ci ratio: 1.599042e-01	ci left: 9.123252e-03	ci right 1.072469e-02	k: 594	n:60000
NTN1   60000 perm   14 sec   (4203 perm/sec)   p_kst 9.900000e-03   p_cons 1.100000e-01   p_joint 7.816667e-03

Joint ci ratio: 1.746793e-01	ci left: 6.518700e-03	ci right 7.779816e-03	k: 499	n:70000
Cons ci ratio: 4.210078e-02	ci left: 1.078752e-01	ci right 1.125286e-01	k: 7713	n:70000
KS ci ratio: 1.476316e-01	ci left: 9.234850e-03	ci right 1.072048e-02	k: 697	n:70000
NTN1   70000 perm   17 sec   (4013 perm/sec)   p_kst 9.957143e-03   p_cons 1.101857e-01   p_joint 7.128571e-03

Joint ci ratio: 1.450240e-01	ci left: 8.393326e-03	ci right 9.717645e-03	k: 723	n:80000
Cons ci ratio: 3.940682e-02	ci left: 1.079017e-01	ci right 1.122516e-01	k: 8805	n:80000
KS ci ratio: 1.394013e-01	ci left: 9.104818e-03	ci right 1.048108e-02	k: 782	n:80000
NTN1   80000 perm   20 sec   (3963 perm/sec)   p_kst 9.775000e-03   p_cons 1.100625e-01   p_joint 9.037500e-03

Joint ci ratio: 1.102353e-01	ci left: 1.309121e-02	ci right 1.462924e-02	k: 1246	n:90000
Cons ci ratio: 3.707694e-02	ci left: 1.084257e-01	ci right 1.125328e-01	k: 9942	n:90000
KS ci ratio: 1.304509e-01	ci left: 9.284961e-03	ci right 1.059136e-02	k: 893	n:90000
NTN1   90000 perm   23 sec   (3944 perm/sec)   p_kst 9.922222e-03   p_cons 1.104667e-01   p_joint 1.384444e-02

Joint ci ratio: 1.176482e-01	ci left: 1.033363e-02	ci right 1.163497e-02	k: 1097	n:100000
Cons ci ratio: 3.526186e-02	ci left: 1.080472e-01	ci right 1.119354e-01	k: 10998	n:100000
KS ci ratio: 1.233393e-01	ci left: 9.382862e-03	ci right 1.062581e-02	k: 999	n:100000
NTN1   100000 perm   26 sec   (3917 perm/sec)   p_kst 9.990000e-03   p_cons 1.099800e-01   p_joint 1.097000e-02

Joint ci ratio: 1.026584e-01	ci left: 1.240980e-02	ci right 1.376150e-02	k: 1438	n:110000
Cons ci ratio: 3.363634e-02	ci left: 1.080484e-01	ci right 1.117540e-01	k: 12088	n:110000
KS ci ratio: 1.177076e-01	ci left: 9.393934e-03	ci right 1.057757e-02	k: 1097	n:110000
NTN1   110000 perm   28 sec   (3884 perm/sec)   p_kst 9.972727e-03   p_cons 1.098909e-01   p_joint 1.307273e-02

Joint ci ratio: 9.462384e-02	ci left: 1.343237e-02	ci right 1.477460e-02	k: 1691	n:120000
Cons ci ratio: 3.218928e-02	ci left: 1.082184e-01	ci right 1.117671e-01	k: 13198	n:120000
KS ci ratio: 1.135527e-01	ci left: 9.274645e-03	ci right 1.039923e-02	k: 1179	n:120000
NTN1   120000 perm   31 sec   (3846 perm/sec)   p_kst 9.825000e-03   p_cons 1.099833e-01   p_joint 1.409167e-02

Joint ci ratio: 9.154698e-02	ci left: 1.327059e-02	ci right 1.455122e-02	k: 1807	n:130000
Cons ci ratio: 3.092758e-02	ci left: 1.082811e-01	ci right 1.116902e-01	k: 14297	n:130000
KS ci ratio: 1.081759e-01	ci left: 9.458748e-03	ci right 1.054789e-02	k: 1299	n:130000
NTN1   130000 perm   35 sec   (3709 perm/sec)   p_kst 9.992308e-03   p_cons 1.099769e-01   p_joint 1.390000e-02

Joint ci ratio: 9.415880e-02	ci left: 1.165244e-02	ci right 1.281075e-02	k: 1711	n:140000
Cons ci ratio: 2.977091e-02	ci left: 1.085500e-01	ci right 1.118376e-01	k: 15426	n:140000
KS ci ratio: 1.048860e-01	ci left: 9.360159e-03	ci right 1.040315e-02	k: 1382	n:140000
NTN1   140000 perm   38 sec   (3675 perm/sec)   p_kst 9.871429e-03   p_cons 1.101857e-01   p_joint 1.222143e-02

Joint ci ratio: 9.689575e-02	ci left: 1.027006e-02	ci right 1.132231e-02	k: 1618	n:150000
Cons ci ratio: 2.877213e-02	ci left: 1.085334e-01	ci right 1.117083e-01	k: 16517	n:150000
KS ci ratio: 1.015299e-01	ci left: 9.340140e-03	ci right 1.034561e-02	k: 1475	n:150000
NTN1   150000 perm   42 sec   (3576 perm/sec)   p_kst 9.833333e-03   p_cons 1.101133e-01   p_joint 1.078667e-02

Joint ci ratio: 1.011473e-01	ci left: 8.829362e-03	ci right 9.776047e-03	k: 1487	n:160000
Cons ci ratio: 2.790051e-02	ci left: 1.082907e-01	ci right 1.113610e-01	k: 17571	n:160000
KS ci ratio: 9.803591e-02	ci left: 9.408460e-03	ci right 1.038442e-02	k: 1582	n:160000
NTN1   160000 perm   45 sec   (3529 perm/sec)   p_kst 9.887500e-03   p_cons 1.098188e-01   p_joint 9.293750e-03

Joint ci ratio: 9.819003e-02	ci left: 8.831939e-03	ci right 9.749618e-03	k: 1578	n:170000
Cons ci ratio: 2.707501e-02	ci left: 1.082825e-01	ci right 1.112603e-01	k: 18660	n:170000
KS ci ratio: 9.462524e-02	ci left: 9.520962e-03	ci right 1.047233e-02	k: 1698	n:170000
NTN1   170000 perm   49 sec   (3493 perm/sec)   p_kst 9.988235e-03   p_cons 1.097647e-01   p_joint 9.282353e-03

Outputting figure to mutsig2_images.part000000000118/NTN1.5_1839_170000_0.0099882_0.10976_0.0092824.png
                gene_name: NTN1
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.0100 
        ci_ks_bounds_left: 0.0095 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.0093 
     ci_joint_bounds_left: 0.0088 
    ci_joint_bounds_right: 0.0097 

Current progress: 34 percent done.
NTSR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
Cons ci ratio: 4.402797e-02	ci left: 4.323342e-01	ci right 4.518996e-01	k: 4421	n:10000
KS ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
NTSR2   10000 perm   2 sec   (4213 perm/sec)   p_kst 5.000000e-04   p_cons 4.421000e-01   p_joint 1.390000e-02

Joint ci ratio: 3.325311e-01	ci left: 5.754049e-03	ci right 8.092762e-03	k: 137	n:20000
Cons ci ratio: 3.270764e-02	ci left: 4.111018e-01	ci right 4.248221e-01	k: 8359	n:20000
KS ci ratio: 8.352662e-01	ci left: 6.500803e-04	ci right 1.604591e-03	k: 21	n:20000
NTSR2   20000 perm   4 sec   (4493 perm/sec)   p_kst 1.050000e-03   p_cons 4.179500e-01   p_joint 6.850000e-03

Joint ci ratio: 1.772951e-01	ci left: 1.461049e-02	ci right 1.748434e-02	k: 480	n:30000
Cons ci ratio: 2.674587e-02	ci left: 4.116450e-01	ci right 4.228377e-01	k: 12517	n:30000
KS ci ratio: 6.272838e-01	ci left: 8.965198e-04	ci right 1.738189e-03	k: 38	n:30000
NTSR2   30000 perm   7 sec   (4552 perm/sec)   p_kst 1.266667e-03   p_cons 4.172333e-01   p_joint 1.600000e-02

Joint ci ratio: 2.062467e-01	ci left: 8.026618e-03	ci right 9.895715e-03	k: 357	n:40000
Cons ci ratio: 2.306717e-02	ci left: 4.144079e-01	ci right 4.241038e-01	k: 16770	n:40000
KS ci ratio: 5.596499e-01	ci left: 8.849137e-04	ci right 1.590715e-03	k: 48	n:40000
NTSR2   40000 perm   9 sec   (4546 perm/sec)   p_kst 1.200000e-03   p_cons 4.192500e-01   p_joint 8.925000e-03

Joint ci ratio: 1.550634e-01	ci left: 1.164070e-02	ci right 1.361649e-02	k: 630	n:50000
Cons ci ratio: 2.064099e-02	ci left: 4.147100e-01	ci right 4.233794e-01	k: 20952	n:50000
KS ci ratio: 4.715821e-01	ci left: 1.056243e-03	ci right 1.723810e-03	k: 68	n:50000
NTSR2   50000 perm   11 sec   (4529 perm/sec)   p_kst 1.360000e-03   p_cons 4.190400e-01   p_joint 1.260000e-02

Joint ci ratio: 2.004523e-01	ci left: 5.698378e-03	ci right 6.983408e-03	k: 379	n:60000
Cons ci ratio: 1.827887e-02	ci left: 4.299293e-01	ci right 4.378771e-01	k: 26034	n:60000
KS ci ratio: 4.128908e-01	ci left: 1.191403e-03	ci right 1.825057e-03	k: 89	n:60000
NTSR2   60000 perm   13 sec   (4492 perm/sec)   p_kst 1.483333e-03   p_cons 4.339000e-01   p_joint 6.316667e-03

Joint ci ratio: 1.951926e-01	ci left: 5.169324e-03	ci right 6.300810e-03	k: 400	n:70000
Cons ci ratio: 1.690777e-02	ci left: 4.306666e-01	ci right 4.380246e-01	k: 30404	n:70000
KS ci ratio: 3.701061e-01	ci left: 1.304650e-03	ci right 1.909300e-03	k: 111	n:70000
NTSR2   70000 perm   16 sec   (4444 perm/sec)   p_kst 1.585714e-03   p_cons 4.343429e-01   p_joint 5.714286e-03

Joint ci ratio: 1.481534e-01	ci left: 8.031969e-03	ci right 9.329039e-03	k: 693	n:80000
Cons ci ratio: 1.579951e-02	ci left: 4.314109e-01	ci right 4.382938e-01	k: 34788	n:80000
KS ci ratio: 3.531805e-01	ci left: 1.266576e-03	ci right 1.820583e-03	k: 122	n:80000
NTSR2   80000 perm   18 sec   (4392 perm/sec)   p_kst 1.525000e-03   p_cons 4.348500e-01   p_joint 8.662500e-03

Joint ci ratio: 1.418736e-01	ci left: 7.814073e-03	ci right 9.017934e-03	k: 756	n:90000
Cons ci ratio: 1.490758e-02	ci left: 4.312248e-01	ci right 4.377127e-01	k: 39102	n:90000
KS ci ratio: 3.310409e-01	ci left: 1.298526e-03	ci right 1.823332e-03	k: 139	n:90000
NTSR2   90000 perm   21 sec   (4339 perm/sec)   p_kst 1.544444e-03   p_cons 4.344667e-01   p_joint 8.400000e-03

Joint ci ratio: 1.578405e-01	ci left: 5.645987e-03	ci right 6.622991e-03	k: 612	n:100000
Cons ci ratio: 1.495644e-02	ci left: 4.041526e-01	ci right 4.102528e-01	k: 40720	n:100000
KS ci ratio: 3.126028e-01	ci left: 1.324954e-03	ci right 1.824671e-03	k: 156	n:100000
NTSR2   100000 perm   23 sec   (4277 perm/sec)   p_kst 1.560000e-03   p_cons 4.072000e-01   p_joint 6.120000e-03

Joint ci ratio: 1.551101e-01	ci left: 5.324815e-03	ci right 6.228815e-03	k: 634	n:110000
Cons ci ratio: 1.425398e-02	ci left: 4.045124e-01	ci right 4.103288e-01	k: 44816	n:110000
KS ci ratio: 2.944068e-01	ci left: 1.372494e-03	ci right 1.854395e-03	k: 176	n:110000
NTSR2   110000 perm   26 sec   (4216 perm/sec)   p_kst 1.600000e-03   p_cons 4.074182e-01   p_joint 5.763636e-03

Joint ci ratio: 1.601696e-01	ci left: 4.568752e-03	ci right 5.372124e-03	k: 595	n:120000
Cons ci ratio: 1.366536e-02	ci left: 4.039938e-01	ci right 4.095607e-01	k: 48813	n:120000
KS ci ratio: 2.790579e-01	ci left: 1.412813e-03	ci right 1.878469e-03	k: 196	n:120000
NTSR2   120000 perm   29 sec   (4152 perm/sec)   p_kst 1.633333e-03   p_cons 4.067750e-01   p_joint 4.958333e-03

Joint ci ratio: 1.548124e-01	ci left: 4.527648e-03	ci right 5.294692e-03	k: 637	n:130000
Cons ci ratio: 1.277326e-02	ci left: 4.174226e-01	ci right 4.227964e-01	k: 54614	n:130000
KS ci ratio: 2.709330e-01	ci left: 1.390077e-03	ci right 1.832631e-03	k: 208	n:130000
NTSR2   130000 perm   32 sec   (4085 perm/sec)   p_kst 1.600000e-03   p_cons 4.201077e-01   p_joint 4.900000e-03

Joint ci ratio: 1.497380e-01	ci left: 4.506553e-03	ci right 5.242755e-03	k: 681	n:140000
Cons ci ratio: 1.230630e-02	ci left: 4.176126e-01	ci right 4.227907e-01	k: 58828	n:140000
KS ci ratio: 2.605430e-01	ci left: 1.404129e-03	ci right 1.831224e-03	k: 225	n:140000
NTSR2   140000 perm   35 sec   (4022 perm/sec)   p_kst 1.607143e-03   p_cons 4.202000e-01   p_joint 4.864286e-03

Joint ci ratio: 1.540171e-01	ci left: 3.968736e-03	ci right 4.637314e-03	k: 644	n:150000
Cons ci ratio: 1.187667e-02	ci left: 4.182066e-01	ci right 4.232098e-01	k: 63106	n:150000
KS ci ratio: 2.533608e-01	ci left: 1.391606e-03	ci right 1.801380e-03	k: 238	n:150000
NTSR2   150000 perm   38 sec   (3958 perm/sec)   p_kst 1.586667e-03   p_cons 4.207067e-01   p_joint 4.293333e-03

Joint ci ratio: 1.523863e-01	ci left: 3.804811e-03	ci right 4.438366e-03	k: 658	n:160000
Cons ci ratio: 1.149793e-02	ci left: 4.183543e-01	ci right 4.231985e-01	k: 67324	n:160000
KS ci ratio: 2.438509e-01	ci left: 1.415987e-03	ci right 1.814922e-03	k: 257	n:160000
NTSR2   160000 perm   41 sec   (3897 perm/sec)   p_kst 1.606250e-03   p_cons 4.207750e-01   p_joint 4.112500e-03

Joint ci ratio: 1.324067e-01	ci left: 4.789665e-03	ci right 5.474437e-03	k: 871	n:170000
Cons ci ratio: 1.116552e-02	ci left: 4.179520e-01	ci right 4.226507e-01	k: 71451	n:170000
KS ci ratio: 2.379325e-01	ci left: 1.404548e-03	ci right 1.789241e-03	k: 270	n:170000
NTSR2   170000 perm   44 sec   (3839 perm/sec)   p_kst 1.588235e-03   p_cons 4.203000e-01   p_joint 5.123529e-03

Joint ci ratio: 1.307781e-01	ci left: 4.641748e-03	ci right 5.296574e-03	k: 893	n:180000
Cons ci ratio: 1.085156e-02	ci left: 4.179905e-01	ci right 4.225566e-01	k: 75649	n:180000
KS ci ratio: 2.336643e-01	ci left: 1.378789e-03	ci right 1.748673e-03	k: 280	n:180000
NTSR2   180000 perm   48 sec   (3782 perm/sec)   p_kst 1.555556e-03   p_cons 4.202722e-01   p_joint 4.961111e-03

Joint ci ratio: 1.265953e-01	ci left: 4.703079e-03	ci right 5.343745e-03	k: 953	n:190000
Cons ci ratio: 1.055663e-02	ci left: 4.183053e-01	ci right 4.227498e-01	k: 79900	n:190000
KS ci ratio: 2.269008e-01	ci left: 1.390535e-03	ci right 1.751262e-03	k: 297	n:190000
NTSR2   190000 perm   51 sec   (3727 perm/sec)   p_kst 1.563158e-03   p_cons 4.205263e-01   p_joint 5.015789e-03

Joint ci ratio: 1.254278e-01	ci left: 4.555066e-03	ci right 5.169420e-03	k: 971	n:200000
Cons ci ratio: 1.029042e-02	ci left: 4.183103e-01	ci right 4.226421e-01	k: 84095	n:200000
KS ci ratio: 2.224679e-01	ci left: 1.377630e-03	ci right 1.727072e-03	k: 309	n:200000
NTSR2   200000 perm   54 sec   (3674 perm/sec)   p_kst 1.545000e-03   p_cons 4.204750e-01   p_joint 4.855000e-03

Joint ci ratio: 1.278430e-01	ci left: 4.172107e-03	ci right 4.746465e-03	k: 935	n:210000
Cons ci ratio: 1.003563e-02	ci left: 4.186920e-01	ci right 4.229197e-01	k: 88369	n:210000
KS ci ratio: 2.179463e-01	ci left: 1.370519e-03	ci right 1.710145e-03	k: 322	n:210000
NTSR2   210000 perm   58 sec   (3621 perm/sec)   p_kst 1.533333e-03   p_cons 4.208048e-01   p_joint 4.452381e-03

Joint ci ratio: 1.284083e-01	ci left: 3.947238e-03	ci right 4.493224e-03	k: 927	n:220000
Cons ci ratio: 9.801891e-03	ci left: 4.188903e-01	ci right 4.230209e-01	k: 92610	n:220000
KS ci ratio: 2.146516e-01	ci left: 1.351213e-03	ci right 1.680326e-03	k: 332	n:220000
NTSR2   220000 perm   62 sec   (3572 perm/sec)   p_kst 1.509091e-03   p_cons 4.209545e-01   p_joint 4.213636e-03

Joint ci ratio: 1.255977e-01	ci left: 3.952427e-03	ci right 4.486273e-03	k: 969	n:230000
Cons ci ratio: 9.586317e-03	ci left: 4.189420e-01	ci right 4.229817e-01	k: 96821	n:230000
KS ci ratio: 2.102774e-01	ci left: 1.350096e-03	ci right 1.671372e-03	k: 346	n:230000
NTSR2   230000 perm   66 sec   (3502 perm/sec)   p_kst 1.504348e-03   p_cons 4.209609e-01   p_joint 4.213043e-03

Joint ci ratio: 1.245813e-01	ci left: 3.852310e-03	ci right 4.368112e-03	k: 985	n:240000
Cons ci ratio: 9.385412e-03	ci left: 4.189362e-01	ci right 4.228907e-01	k: 101019	n:240000
KS ci ratio: 2.053075e-01	ci left: 1.360991e-03	ci right 1.676245e-03	k: 363	n:240000
NTSR2   240000 perm   69 sec   (3463 perm/sec)   p_kst 1.512500e-03   p_cons 4.209125e-01   p_joint 4.104167e-03

Joint ci ratio: 1.218906e-01	ci left: 3.868794e-03	ci right 4.374808e-03	k: 1029	n:250000
Cons ci ratio: 9.192406e-03	ci left: 4.191555e-01	ci right 4.230303e-01	k: 105273	n:250000
KS ci ratio: 2.014702e-01	ci left: 1.359699e-03	ci right 1.668043e-03	k: 377	n:250000
NTSR2   250000 perm   73 sec   (3425 perm/sec)   p_kst 1.508000e-03   p_cons 4.210920e-01   p_joint 4.116000e-03

Joint ci ratio: 1.214865e-01	ci left: 3.746084e-03	ci right 4.234306e-03	k: 1036	n:260000
Cons ci ratio: 9.009840e-03	ci left: 4.194125e-01	ci right 4.232123e-01	k: 109541	n:260000
KS ci ratio: 1.980934e-01	ci left: 1.354902e-03	ci right 1.656386e-03	k: 390	n:260000
NTSR2   260000 perm   77 sec   (3385 perm/sec)   p_kst 1.500000e-03   p_cons 4.213115e-01   p_joint 3.984615e-03

Joint ci ratio: 1.194320e-01	ci left: 3.736654e-03	ci right 4.214830e-03	k: 1072	n:270000
Cons ci ratio: 8.842233e-03	ci left: 4.194032e-01	ci right 4.231318e-01	k: 113742	n:270000
KS ci ratio: 1.948810e-01	ci left: 1.350499e-03	ci right 1.645553e-03	k: 403	n:270000
NTSR2   270000 perm   81 sec   (3347 perm/sec)   p_kst 1.492593e-03   p_cons 4.212667e-01   p_joint 3.970370e-03

Joint ci ratio: 1.264986e-01	ci left: 3.201593e-03	ci right 3.637357e-03	k: 956	n:280000
Cons ci ratio: 8.685744e-03	ci left: 4.192774e-01	ci right 4.229385e-01	k: 117910	n:280000
KS ci ratio: 1.909051e-01	ci left: 1.360050e-03	ci right 1.650425e-03	k: 420	n:280000
NTSR2   280000 perm   85 sec   (3305 perm/sec)   p_kst 1.500000e-03   p_cons 4.211071e-01   p_joint 3.414286e-03

Joint ci ratio: 1.086872e-01	ci left: 4.222733e-03	ci right 4.711389e-03	k: 1294	n:290000
Cons ci ratio: 8.539694e-03	ci left: 4.190229e-01	ci right 4.226200e-01	k: 122038	n:290000
KS ci ratio: 1.869494e-01	ci left: 1.372286e-03	ci right 1.658514e-03	k: 438	n:290000
NTSR2   290000 perm   89 sec   (3264 perm/sec)   p_kst 1.510345e-03   p_cons 4.208207e-01   p_joint 4.462069e-03

Joint ci ratio: 1.089492e-01	ci left: 4.062501e-03	ci right 4.533820e-03	k: 1288	n:300000
Cons ci ratio: 8.389173e-03	ci left: 4.194589e-01	ci right 4.229959e-01	k: 126368	n:300000
KS ci ratio: 1.824320e-01	ci left: 1.396488e-03	ci right 1.679947e-03	k: 460	n:300000
NTSR2   300000 perm   93 sec   (3223 perm/sec)   p_kst 1.533333e-03   p_cons 4.212267e-01   p_joint 4.293333e-03

Joint ci ratio: 1.070552e-01	ci left: 4.075833e-03	ci right 4.539960e-03	k: 1334	n:310000
Cons ci ratio: 8.248077e-03	ci left: 4.197641e-01	ci right 4.232438e-01	k: 130666	n:310000
KS ci ratio: 1.802949e-01	ci left: 1.385312e-03	ci right 1.662850e-03	k: 471	n:310000
NTSR2   310000 perm   97 sec   (3182 perm/sec)   p_kst 1.519355e-03   p_cons 4.215032e-01   p_joint 4.303226e-03

Joint ci ratio: 1.060305e-01	ci left: 4.027543e-03	ci right 4.481507e-03	k: 1360	n:320000
Cons ci ratio: 8.118129e-03	ci left: 4.197945e-01	ci right 4.232194e-01	k: 134882	n:320000
KS ci ratio: 1.773144e-01	ci left: 1.389784e-03	ci right 1.663121e-03	k: 487	n:320000
NTSR2   320000 perm   102 sec   (3148 perm/sec)   p_kst 1.521875e-03   p_cons 4.215063e-01   p_joint 4.250000e-03

Joint ci ratio: 1.059983e-01	ci left: 3.908433e-03	ci right 4.348830e-03	k: 1361	n:330000
Cons ci ratio: 7.991106e-03	ci left: 4.200082e-01	ci right 4.233810e-01	k: 139159	n:330000
KS ci ratio: 1.737877e-01	ci left: 1.405614e-03	ci right 1.675988e-03	k: 507	n:330000
NTSR2   330000 perm   106 sec   (3114 perm/sec)   p_kst 1.536364e-03   p_cons 4.216939e-01   p_joint 4.124242e-03

Joint ci ratio: 1.045129e-01	ci left: 3.905165e-03	ci right 4.338648e-03	k: 1400	n:340000
Cons ci ratio: 7.875418e-03	ci left: 4.198658e-01	ci right 4.231884e-01	k: 143319	n:340000
KS ci ratio: 1.703019e-01	ci left: 1.423378e-03	ci right 1.691115e-03	k: 528	n:340000
NTSR2   340000 perm   111 sec   (3077 perm/sec)   p_kst 1.552941e-03   p_cons 4.215265e-01   p_joint 4.117647e-03

Joint ci ratio: 1.050473e-01	ci left: 3.754622e-03	ci right 4.173657e-03	k: 1386	n:350000
Cons ci ratio: 7.764975e-03	ci left: 4.197091e-01	ci right 4.229836e-01	k: 147471	n:350000
KS ci ratio: 1.677833e-01	ci left: 1.426491e-03	ci right 1.690443e-03	k: 544	n:350000
NTSR2   350000 perm   115 sec   (3032 perm/sec)   p_kst 1.554286e-03   p_cons 4.213457e-01   p_joint 3.960000e-03

Joint ci ratio: 1.049772e-01	ci left: 3.655727e-03	ci right 4.063435e-03	k: 1388	n:360000
Cons ci ratio: 7.656783e-03	ci left: 4.197057e-01	ci right 4.229344e-01	k: 151675	n:360000
KS ci ratio: 1.656693e-01	ci left: 1.424132e-03	ci right 1.683997e-03	k: 558	n:360000
NTSR2   360000 perm   120 sec   (2992 perm/sec)   p_kst 1.550000e-03   p_cons 4.213194e-01   p_joint 3.855556e-03

Joint ci ratio: 1.035701e-01	ci left: 3.656947e-03	ci right 4.058992e-03	k: 1426	n:370000
Cons ci ratio: 7.549683e-03	ci left: 4.199163e-01	ci right 4.231012e-01	k: 155958	n:370000
KS ci ratio: 1.629229e-01	ci left: 1.434883e-03	ci right 1.691943e-03	k: 577	n:370000
NTSR2   370000 perm   125 sec   (2958 perm/sec)   p_kst 1.559459e-03   p_cons 4.215081e-01   p_joint 3.854054e-03

Joint ci ratio: 1.020783e-01	ci left: 3.668397e-03	ci right 4.065543e-03	k: 1468	n:380000
Cons ci ratio: 7.449165e-03	ci left: 4.199713e-01	ci right 4.231141e-01	k: 160186	n:380000
KS ci ratio: 1.607136e-01	ci left: 1.437523e-03	ci right 1.691227e-03	k: 593	n:380000
NTSR2   380000 perm   130 sec   (2925 perm/sec)   p_kst 1.560526e-03   p_cons 4.215421e-01   p_joint 3.863158e-03

Joint ci ratio: 1.015299e-01	ci left: 3.614311e-03	ci right 4.003374e-03	k: 1484	n:390000
Cons ci ratio: 7.355032e-03	ci left: 4.198598e-01	ci right 4.229618e-01	k: 164350	n:390000
KS ci ratio: 1.580735e-01	ci left: 1.449901e-03	ci right 1.701187e-03	k: 613	n:390000
NTSR2   390000 perm   135 sec   (2893 perm/sec)   p_kst 1.571795e-03   p_cons 4.214103e-01   p_joint 3.805128e-03

Joint ci ratio: 8.608215e-02	ci left: 4.935414e-03	ci right 5.381801e-03	k: 2062	n:400000
Cons ci ratio: 7.261437e-03	ci left: 4.199516e-01	ci right 4.230146e-01	k: 168593	n:400000
KS ci ratio: 1.547064e-01	ci left: 1.478514e-03	ci right 1.728795e-03	k: 640	n:400000
NTSR2   400000 perm   140 sec   (2863 perm/sec)   p_kst 1.600000e-03   p_cons 4.214825e-01   p_joint 5.155000e-03

Joint ci ratio: 8.737388e-02	ci left: 4.671843e-03	ci right 5.101054e-03	k: 2002	n:410000
Cons ci ratio: 6.976289e-03	ci left: 4.335354e-01	ci right 4.365728e-01	k: 178372	n:410000
KS ci ratio: 1.528110e-01	ci left: 1.479975e-03	ci right 1.727154e-03	k: 656	n:410000
NTSR2   410000 perm   145 sec   (2833 perm/sec)   p_kst 1.600000e-03   p_cons 4.350537e-01   p_joint 4.882927e-03

Joint ci ratio: 7.861030e-02	ci left: 5.654268e-03	ci right 6.119255e-03	k: 2471	n:420000
Cons ci ratio: 6.890653e-03	ci left: 4.337022e-01	ci right 4.367034e-01	k: 182785	n:420000
KS ci ratio: 1.512088e-01	ci left: 1.476803e-03	ci right 1.720632e-03	k: 670	n:420000
NTSR2   420000 perm   150 sec   (2803 perm/sec)   p_kst 1.595238e-03   p_cons 4.352024e-01   p_joint 5.883333e-03

Joint ci ratio: 7.781245e-02	ci left: 5.639057e-03	ci right 6.097872e-03	k: 2522	n:430000
Cons ci ratio: 6.809898e-03	ci left: 4.337314e-01	ci right 4.366974e-01	k: 187142	n:430000
KS ci ratio: 1.499853e-01	ci left: 1.467076e-03	ci right 1.707162e-03	k: 681	n:430000
NTSR2   430000 perm   155 sec   (2774 perm/sec)   p_kst 1.583721e-03   p_cons 4.352140e-01   p_joint 5.865116e-03

Joint ci ratio: 7.709868e-02	ci left: 5.615643e-03	ci right 6.068174e-03	k: 2569	n:440000
Cons ci ratio: 6.732976e-03	ci left: 4.336821e-01	ci right 4.366142e-01	k: 191465	n:440000
KS ci ratio: 1.490065e-01	ci left: 1.453422e-03	ci right 1.689583e-03	k: 690	n:440000
NTSR2   440000 perm   160 sec   (2744 perm/sec)   p_kst 1.568182e-03   p_cons 4.351477e-01   p_joint 5.838636e-03

Joint ci ratio: 7.666986e-02	ci left: 5.554050e-03	ci right 5.999017e-03	k: 2598	n:450000
Cons ci ratio: 6.657880e-03	ci left: 4.336886e-01	ci right 4.365878e-01	k: 195812	n:450000
KS ci ratio: 1.478353e-01	ci left: 1.444660e-03	ci right 1.677389e-03	k: 701	n:450000
NTSR2   450000 perm   166 sec   (2716 perm/sec)   p_kst 1.557778e-03   p_cons 4.351378e-01   p_joint 5.773333e-03

Joint ci ratio: 7.664505e-02	ci left: 5.437562e-03	ci right 5.873048e-03	k: 2600	n:460000
Cons ci ratio: 6.586524e-03	ci left: 4.335993e-01	ci right 4.364668e-01	k: 200115	n:460000
KS ci ratio: 1.461787e-01	ci left: 1.446757e-03	ci right 1.676985e-03	k: 717	n:460000
NTSR2   460000 perm   171 sec   (2687 perm/sec)   p_kst 1.558696e-03   p_cons 4.350326e-01   p_joint 5.652174e-03

Joint ci ratio: 7.734041e-02	ci left: 5.225859e-03	ci right 5.648358e-03	k: 2554	n:470000
Cons ci ratio: 6.515608e-03	ci left: 4.336501e-01	ci right 4.364869e-01	k: 204482	n:470000
KS ci ratio: 1.443798e-01	ci left: 1.452881e-03	ci right 1.680993e-03	k: 735	n:470000
NTSR2   470000 perm   177 sec   (2660 perm/sec)   p_kst 1.563830e-03   p_cons 4.350681e-01   p_joint 5.434043e-03

Joint ci ratio: 7.698216e-02	ci left: 5.166016e-03	ci right 5.581656e-03	k: 2578	n:480000
Cons ci ratio: 6.448765e-03	ci left: 4.335594e-01	ci right 4.363664e-01	k: 208782	n:480000
KS ci ratio: 1.427405e-01	ci left: 1.456758e-03	ci right 1.682660e-03	k: 752	n:480000
NTSR2   480000 perm   182 sec   (2634 perm/sec)   p_kst 1.566667e-03   p_cons 4.349625e-01   p_joint 5.370833e-03

Joint ci ratio: 7.636379e-02	ci left: 5.144656e-03	ci right 5.555104e-03	k: 2620	n:490000
Cons ci ratio: 6.381871e-03	ci left: 4.336317e-01	ci right 4.364099e-01	k: 213160	n:490000
KS ci ratio: 1.408812e-01	ci left: 1.466397e-03	ci right 1.690583e-03	k: 772	n:490000
NTSR2   490000 perm   188 sec   (2608 perm/sec)   p_kst 1.575510e-03   p_cons 4.350204e-01   p_joint 5.346939e-03

Joint ci ratio: 7.570294e-02	ci left: 5.132012e-03	ci right 5.537752e-03	k: 2666	n:500000
Cons ci ratio: 6.315037e-03	ci left: 4.338552e-01	ci right 4.366056e-01	k: 217615	n:500000
KS ci ratio: 1.397117e-01	ci left: 1.462156e-03	ci right 1.683684e-03	k: 785	n:500000
NTSR2   500000 perm   194 sec   (2582 perm/sec)   p_kst 1.570000e-03   p_cons 4.352300e-01   p_joint 5.332000e-03

Joint ci ratio: 7.529649e-02	ci left: 5.087169e-03	ci right 5.487110e-03	k: 2695	n:510000
Cons ci ratio: 6.251954e-03	ci left: 4.339367e-01	ci right 4.366601e-01	k: 222002	n:510000
KS ci ratio: 1.383110e-01	ci left: 1.463768e-03	ci right 1.683133e-03	k: 801	n:510000
NTSR2   510000 perm   199 sec   (2557 perm/sec)   p_kst 1.570588e-03   p_cons 4.352980e-01   p_joint 5.284314e-03

Joint ci ratio: 7.459439e-02	ci left: 5.085578e-03	ci right 5.481504e-03	k: 2746	n:520000
Cons ci ratio: 6.191111e-03	ci left: 4.339845e-01	ci right 4.366816e-01	k: 226373	n:520000
KS ci ratio: 1.373728e-01	ci left: 1.456042e-03	ci right 1.672649e-03	k: 812	n:520000
NTSR2   520000 perm   205 sec   (2532 perm/sec)   p_kst 1.561538e-03   p_cons 4.353327e-01   p_joint 5.280769e-03

Joint ci ratio: 7.400469e-02	ci left: 5.071098e-03	ci right 5.462642e-03	k: 2790	n:530000
Cons ci ratio: 6.130999e-03	ci left: 4.341117e-01	ci right 4.367833e-01	k: 230787	n:530000
KS ci ratio: 1.363705e-01	ci left: 1.450436e-03	ci right 1.664506e-03	k: 824	n:530000
NTSR2   530000 perm   211 sec   (2510 perm/sec)   p_kst 1.554717e-03   p_cons 4.354472e-01   p_joint 5.264151e-03

Joint ci ratio: 6.906906e-02	ci left: 5.724764e-03	ci right 6.136119e-03	k: 3201	n:540000
Cons ci ratio: 6.075441e-03	ci left: 4.340048e-01	ci right 4.366514e-01	k: 235077	n:540000
KS ci ratio: 1.347464e-01	ci left: 1.459357e-03	ci right 1.671974e-03	k: 844	n:540000
NTSR2   540000 perm   217 sec   (2485 perm/sec)   p_kst 1.562963e-03   p_cons 4.353278e-01   p_joint 5.927778e-03

Joint ci ratio: 6.866417e-02	ci left: 5.688575e-03	ci right 6.094838e-03	k: 3239	n:550000
Cons ci ratio: 6.019963e-03	ci left: 4.340164e-01	ci right 4.366388e-01	k: 239430	n:550000
KS ci ratio: 1.338002e-01	ci left: 1.453908e-03	ci right 1.664125e-03	k: 856	n:550000
NTSR2   550000 perm   223 sec   (2461 perm/sec)   p_kst 1.556364e-03   p_cons 4.353273e-01   p_joint 5.889091e-03

Joint ci ratio: 6.861458e-02	ci left: 5.595760e-03	ci right 5.995093e-03	k: 3244	n:560000
Cons ci ratio: 5.966042e-03	ci left: 4.340223e-01	ci right 4.366212e-01	k: 243780	n:560000
KS ci ratio: 1.325683e-01	ci left: 1.455565e-03	ci right 1.663932e-03	k: 872	n:560000
NTSR2   560000 perm   230 sec   (2433 perm/sec)   p_kst 1.557143e-03   p_cons 4.353214e-01   p_joint 5.792857e-03

Joint ci ratio: 6.942966e-02	ci left: 5.368259e-03	ci right 5.756091e-03	k: 3169	n:570000
Cons ci ratio: 5.913503e-03	ci left: 4.340316e-01	ci right 4.366076e-01	k: 248132	n:570000
KS ci ratio: 1.312960e-01	ci left: 1.458869e-03	ci right 1.665548e-03	k: 889	n:570000
NTSR2   570000 perm   236 sec   (2410 perm/sec)   p_kst 1.559649e-03   p_cons 4.353193e-01   p_joint 5.559649e-03

Joint ci ratio: 6.502125e-02	ci left: 6.025038e-03	ci right 6.431642e-03	k: 3611	n:580000
Cons ci ratio: 5.862471e-03	ci left: 4.340287e-01	ci right 4.365823e-01	k: 252477	n:580000
KS ci ratio: 1.299162e-01	ci left: 1.465405e-03	ci right 1.670660e-03	k: 908	n:580000
NTSR2   580000 perm   243 sec   (2388 perm/sec)   p_kst 1.565517e-03   p_cons 4.353052e-01   p_joint 6.225862e-03

Joint ci ratio: 6.624433e-02	ci left: 5.704497e-03	ci right 6.096988e-03	k: 3480	n:590000
Cons ci ratio: 5.811697e-03	ci left: 4.341140e-01	ci right 4.366460e-01	k: 256874	n:590000
KS ci ratio: 1.290674e-01	ci left: 1.460248e-03	ci right 1.663341e-03	k: 920	n:590000
NTSR2   590000 perm   249 sec   (2367 perm/sec)   p_kst 1.559322e-03   p_cons 4.353797e-01   p_joint 5.898305e-03

Joint ci ratio: 6.669229e-02	ci left: 5.534014e-03	ci right 5.917449e-03	k: 3434	n:600000
Cons ci ratio: 5.761106e-03	ci left: 4.342916e-01	ci right 4.368024e-01	k: 261328	n:600000
KS ci ratio: 1.280977e-01	ci left: 1.458493e-03	ci right 1.659702e-03	k: 934	n:600000
NTSR2   600000 perm   256 sec   (2346 perm/sec)   p_kst 1.556667e-03   p_cons 4.355467e-01   p_joint 5.723333e-03

Joint ci ratio: 6.220901e-02	ci left: 6.265970e-03	ci right 6.669886e-03	k: 3944	n:610000
Cons ci ratio: 5.713926e-03	ci left: 4.342815e-01	ci right 4.367716e-01	k: 265671	n:610000
KS ci ratio: 1.272166e-01	ci left: 1.455214e-03	ci right 1.654486e-03	k: 947	n:610000
NTSR2   610000 perm   262 sec   (2326 perm/sec)   p_kst 1.552459e-03   p_cons 4.355262e-01   p_joint 6.465574e-03

Joint ci ratio: 6.178811e-02	ci left: 6.250651e-03	ci right 6.650756e-03	k: 3998	n:620000
Cons ci ratio: 5.666827e-03	ci left: 4.343637e-01	ci right 4.368337e-01	k: 270071	n:620000
KS ci ratio: 1.260909e-01	ci left: 1.458293e-03	ci right 1.656088e-03	k: 964	n:620000
NTSR2   620000 perm   269 sec   (2305 perm/sec)   p_kst 1.554839e-03   p_cons 4.355984e-01   p_joint 6.448387e-03

Joint ci ratio: 6.194738e-02	ci left: 6.120167e-03	ci right 6.512965e-03	k: 3978	n:630000
Cons ci ratio: 5.623651e-03	ci left: 4.342006e-01	ci right 4.366508e-01	k: 274318	n:630000
KS ci ratio: 1.248673e-01	ci left: 1.464358e-03	ci right 1.660906e-03	k: 983	n:630000
NTSR2   630000 perm   276 sec   (2284 perm/sec)   p_kst 1.560317e-03   p_cons 4.354254e-01   p_joint 6.314286e-03

Joint ci ratio: 6.256250e-02	ci left: 5.906079e-03	ci right 6.289037e-03	k: 3901	n:640000
Cons ci ratio: 5.579850e-03	ci left: 4.341832e-01	ci right 4.366142e-01	k: 278655	n:640000
KS ci ratio: 1.239885e-01	ci left: 1.462672e-03	ci right 1.657510e-03	k: 997	n:640000
NTSR2   640000 perm   283 sec   (2264 perm/sec)   p_kst 1.557812e-03   p_cons 4.353984e-01   p_joint 6.095313e-03

Joint ci ratio: 6.312945e-02	ci left: 5.710713e-03	ci right 6.084481e-03	k: 3832	n:650000
Cons ci ratio: 5.537628e-03	ci left: 4.341158e-01	ci right 4.365279e-01	k: 282959	n:650000
KS ci ratio: 1.230064e-01	ci left: 1.464024e-03	ci right 1.657385e-03	k: 1013	n:650000
NTSR2   650000 perm   290 sec   (2244 perm/sec)   p_kst 1.558462e-03   p_cons 4.353215e-01   p_joint 5.895385e-03

Joint ci ratio: 6.312401e-02	ci left: 5.625670e-03	ci right 5.993839e-03	k: 3833	n:660000
Cons ci ratio: 5.495181e-03	ci left: 4.341549e-01	ci right 4.365487e-01	k: 287332	n:660000
KS ci ratio: 1.224048e-01	ci left: 1.456528e-03	ci right 1.647890e-03	k: 1023	n:660000
NTSR2   660000 perm   297 sec   (2224 perm/sec)   p_kst 1.550000e-03   p_cons 4.353515e-01   p_joint 5.807576e-03

Joint ci ratio: 6.374847e-02	ci left: 5.432992e-03	ci right 5.792198e-03	k: 3759	n:670000
Cons ci ratio: 5.453364e-03	ci left: 4.342228e-01	ci right 4.365987e-01	k: 291725	n:670000
KS ci ratio: 1.211682e-01	ci left: 1.465178e-03	ci right 1.655592e-03	k: 1044	n:670000
NTSR2   670000 perm   304 sec   (2205 perm/sec)   p_kst 1.558209e-03   p_cons 4.354104e-01   p_joint 5.610448e-03

Joint ci ratio: 6.254961e-02	ci left: 5.562975e-03	ci right 5.923608e-03	k: 3904	n:680000
Cons ci ratio: 5.412828e-03	ci left: 4.342579e-01	ci right 4.366162e-01	k: 296097	n:680000
KS ci ratio: 1.197996e-01	ci left: 1.477862e-03	ci right 1.667601e-03	k: 1068	n:680000
NTSR2   680000 perm   311 sec   (2187 perm/sec)   p_kst 1.570588e-03   p_cons 4.354368e-01   p_joint 5.741176e-03

Joint ci ratio: 6.260869e-02	ci left: 5.472358e-03	ci right 5.827464e-03	k: 3897	n:690000
Cons ci ratio: 5.374054e-03	ci left: 4.342123e-01	ci right 4.365535e-01	k: 300414	n:690000
KS ci ratio: 1.190779e-01	ci left: 1.474721e-03	ci right 1.662837e-03	k: 1081	n:690000
NTSR2   690000 perm   318 sec   (2168 perm/sec)   p_kst 1.566667e-03   p_cons 4.353826e-01   p_joint 5.647826e-03

Joint ci ratio: 6.233045e-02	ci left: 5.443398e-03	ci right 5.794998e-03	k: 3932	n:700000
Cons ci ratio: 5.335961e-03	ci left: 4.341809e-01	ci right 4.365053e-01	k: 304740	n:700000
KS ci ratio: 1.182611e-01	ci left: 1.474446e-03	ci right 1.661146e-03	k: 1096	n:700000
NTSR2   700000 perm   326 sec   (2150 perm/sec)   p_kst 1.565714e-03   p_cons 4.353429e-01   p_joint 5.617143e-03

Joint ci ratio: 6.193044e-02	ci left: 5.437445e-03	ci right 5.786326e-03	k: 3983	n:710000
Cons ci ratio: 5.299305e-03	ci left: 4.340914e-01	ci right 4.363993e-01	k: 309024	n:710000
KS ci ratio: 1.176730e-01	ci left: 1.468715e-03	ci right 1.653700e-03	k: 1107	n:710000
NTSR2   710000 perm   333 sec   (2132 perm/sec)   p_kst 1.559155e-03   p_cons 4.352451e-01   p_joint 5.609859e-03

Joint ci ratio: 6.154571e-02	ci left: 5.430297e-03	ci right 5.776477e-03	k: 4033	n:720000
Cons ci ratio: 5.262427e-03	ci left: 4.340947e-01	ci right 4.363864e-01	k: 313373	n:720000
KS ci ratio: 1.170936e-01	ci left: 1.463145e-03	ci right 1.646458e-03	k: 1118	n:720000
NTSR2   720000 perm   341 sec   (2113 perm/sec)   p_kst 1.552778e-03   p_cons 4.352403e-01   p_joint 5.601389e-03

Joint ci ratio: 6.163264e-02	ci left: 5.341065e-03	ci right 5.682055e-03	k: 4022	n:730000
Cons ci ratio: 5.224867e-03	ci left: 4.342334e-01	ci right 4.365095e-01	k: 317821	n:730000
KS ci ratio: 1.165743e-01	ci left: 1.456400e-03	ci right 1.638003e-03	k: 1128	n:730000
NTSR2   730000 perm   348 sec   (2096 perm/sec)   p_kst 1.545205e-03   p_cons 4.353712e-01   p_joint 5.509589e-03

Joint ci ratio: 6.129880e-02	ci left: 5.327433e-03	ci right 5.665645e-03	k: 4066	n:740000
Cons ci ratio: 5.188441e-03	ci left: 4.343361e-01	ci right 4.365968e-01	k: 322245	n:740000
KS ci ratio: 1.157063e-01	ci left: 1.459025e-03	ci right 1.639508e-03	k: 1145	n:740000
NTSR2   740000 perm   356 sec   (2080 perm/sec)   p_kst 1.547297e-03   p_cons 4.354662e-01   p_joint 5.494595e-03

Joint ci ratio: 6.142266e-02	ci left: 5.235387e-03	ci right 5.568451e-03	k: 4050	n:750000
Cons ci ratio: 5.154234e-03	ci left: 4.342961e-01	ci right 4.365417e-01	k: 326564	n:750000
KS ci ratio: 1.149069e-01	ci left: 1.460289e-03	ci right 1.639596e-03	k: 1161	n:750000
NTSR2   750000 perm   363 sec   (2065 perm/sec)   p_kst 1.548000e-03   p_cons 4.354187e-01   p_joint 5.400000e-03

Joint ci ratio: 6.109968e-02	ci left: 5.222212e-03	ci right 5.552628e-03	k: 4093	n:760000
Cons ci ratio: 5.119832e-03	ci left: 4.343401e-01	ci right 4.365709e-01	k: 330946	n:760000
KS ci ratio: 1.142210e-01	ci left: 1.458968e-03	ci right 1.636971e-03	k: 1175	n:760000
NTSR2   760000 perm   371 sec   (2050 perm/sec)   p_kst 1.546053e-03   p_cons 4.354553e-01   p_joint 5.385526e-03

Joint ci ratio: 6.068596e-02	ci left: 5.226011e-03	ci right 5.554350e-03	k: 4149	n:770000
Cons ci ratio: 5.085061e-03	ci left: 4.344843e-01	ci right 4.367006e-01	k: 335406	n:770000
KS ci ratio: 1.134995e-01	ci left: 1.458946e-03	ci right 1.635747e-03	k: 1190	n:770000
NTSR2   770000 perm   379 sec   (2033 perm/sec)   p_kst 1.545455e-03   p_cons 4.355922e-01   p_joint 5.388312e-03

Joint ci ratio: 6.059273e-02	ci left: 5.175421e-03	ci right 5.500065e-03	k: 4162	n:780000
Cons ci ratio: 5.052451e-03	ci left: 4.344826e-01	ci right 4.366846e-01	k: 339755	n:780000
KS ci ratio: 1.126979e-01	ci left: 1.461420e-03	ci right 1.637187e-03	k: 1207	n:780000
NTSR2   780000 perm   387 sec   (2018 perm/sec)   p_kst 1.547436e-03   p_cons 4.355833e-01   p_joint 5.335897e-03

Joint ci ratio: 6.022504e-02	ci left: 5.173491e-03	ci right 5.495976e-03	k: 4213	n:790000
Cons ci ratio: 5.020977e-03	ci left: 4.344303e-01	ci right 4.366183e-01	k: 344064	n:790000
KS ci ratio: 1.118673e-01	ci left: 1.465066e-03	ci right 1.639887e-03	k: 1225	n:790000
NTSR2   790000 perm   395 sec   (2002 perm/sec)   p_kst 1.550633e-03   p_cons 4.355241e-01   p_joint 5.332911e-03

Joint ci ratio: 5.990635e-02	ci left: 5.164226e-03	ci right 5.484371e-03	k: 4258	n:800000
Cons ci ratio: 4.990883e-03	ci left: 4.343006e-01	ci right 4.364748e-01	k: 348310	n:800000
KS ci ratio: 1.111892e-01	ci left: 1.464980e-03	ci right 1.638662e-03	k: 1240	n:800000
NTSR2   800000 perm   403 sec   (1986 perm/sec)   p_kst 1.550000e-03   p_cons 4.353875e-01   p_joint 5.322500e-03

Joint ci ratio: 6.006448e-02	ci left: 5.073710e-03	ci right 5.389103e-03	k: 4236	n:810000
Cons ci ratio: 4.960775e-03	ci left: 4.342285e-01	ci right 4.363892e-01	k: 352600	n:810000
KS ci ratio: 1.107000e-01	ci left: 1.460097e-03	ci right 1.632388e-03	k: 1251	n:810000
NTSR2   810000 perm   411 sec   (1971 perm/sec)   p_kst 1.544444e-03   p_cons 4.353086e-01   p_joint 5.229630e-03

Joint ci ratio: 6.064460e-02	ci left: 4.915735e-03	ci right 5.224362e-03	k: 4156	n:820000
Cons ci ratio: 4.930435e-03	ci left: 4.342350e-01	ci right 4.363825e-01	k: 356953	n:820000
KS ci ratio: 1.099126e-01	ci left: 1.463636e-03	ci right 1.635038e-03	k: 1269	n:820000
NTSR2   820000 perm   419 sec   (1956 perm/sec)   p_kst 1.547561e-03   p_cons 4.353085e-01   p_joint 5.068293e-03

Joint ci ratio: 6.164552e-02	ci left: 4.698702e-03	ci right 4.998745e-03	k: 4023	n:830000
Cons ci ratio: 4.901930e-03	ci left: 4.341126e-01	ci right 4.362469e-01	k: 361199	n:830000
KS ci ratio: 1.091841e-01	ci left: 1.465923e-03	ci right 1.636381e-03	k: 1286	n:830000
NTSR2   830000 perm   428 sec   (1941 perm/sec)   p_kst 1.549398e-03   p_cons 4.351795e-01   p_joint 4.846988e-03

Joint ci ratio: 6.126601e-02	ci left: 4.701375e-03	ci right 4.999675e-03	k: 4073	n:840000
Cons ci ratio: 4.872497e-03	ci left: 4.341358e-01	ci right 4.362575e-01	k: 365565	n:840000
KS ci ratio: 1.085952e-01	ci left: 1.464684e-03	ci right 1.634021e-03	k: 1300	n:840000
NTSR2   840000 perm   436 sec   (1927 perm/sec)   p_kst 1.547619e-03   p_cons 4.351964e-01   p_joint 4.848810e-03

Joint ci ratio: 6.230585e-02	ci left: 4.490837e-03	ci right 4.780790e-03	k: 3939	n:850000
Cons ci ratio: 4.843808e-03	ci left: 4.341362e-01	ci right 4.362454e-01	k: 369912	n:850000
KS ci ratio: 1.081393e-01	ci left: 1.460043e-03	ci right 1.628089e-03	k: 1311	n:850000
NTSR2   850000 perm   444 sec   (1913 perm/sec)   p_kst 1.542353e-03   p_cons 4.351906e-01   p_joint 4.634118e-03

Joint ci ratio: 6.218872e-02	ci left: 4.455786e-03	ci right 4.742915e-03	k: 3954	n:860000
Cons ci ratio: 4.816110e-03	ci left: 4.340867e-01	ci right 4.361835e-01	k: 374216	n:860000
KS ci ratio: 1.075670e-01	ci left: 1.458905e-03	ci right 1.625876e-03	k: 1325	n:860000
NTSR2   860000 perm   453 sec   (1899 perm/sec)   p_kst 1.540698e-03   p_cons 4.351349e-01   p_joint 4.597674e-03

Joint ci ratio: 5.463830e-02	ci left: 5.720870e-03	ci right 6.043353e-03	k: 5116	n:870000
Cons ci ratio: 4.789060e-03	ci left: 4.340200e-01	ci right 4.361046e-01	k: 378504	n:870000
KS ci ratio: 1.067645e-01	ci left: 1.464509e-03	ci right 1.630792e-03	k: 1345	n:870000
NTSR2   870000 perm   462 sec   (1885 perm/sec)   p_kst 1.545977e-03   p_cons 4.350621e-01   p_joint 5.880460e-03

Joint ci ratio: 5.435770e-02	ci left: 5.715266e-03	ci right 6.035727e-03	k: 5169	n:880000
Cons ci ratio: 4.762429e-03	ci left: 4.339582e-01	ci right 4.360309e-01	k: 382795	n:880000
KS ci ratio: 1.060576e-01	ci left: 1.467777e-03	ci right 1.633259e-03	k: 1363	n:880000
NTSR2   880000 perm   470 sec   (1872 perm/sec)   p_kst 1.548864e-03   p_cons 4.349943e-01   p_joint 5.873864e-03

Joint ci ratio: 5.469033e-02	ci left: 5.582326e-03	ci right 5.897308e-03	k: 5107	n:890000
Cons ci ratio: 4.735554e-03	ci left: 4.339686e-01	ci right 4.360296e-01	k: 387149	n:890000
KS ci ratio: 1.057098e-01	ci left: 1.461130e-03	ci right 1.625288e-03	k: 1372	n:890000
NTSR2   890000 perm   479 sec   (1859 perm/sec)   p_kst 1.541573e-03   p_cons 4.349989e-01   p_joint 5.738202e-03

Joint ci ratio: 5.453126e-02	ci left: 5.553176e-03	ci right 5.865574e-03	k: 5137	n:900000
Cons ci ratio: 4.709214e-03	ci left: 4.339699e-01	ci right 4.360194e-01	k: 391495	n:900000
KS ci ratio: 1.051371e-01	ci left: 1.461122e-03	ci right 1.624335e-03	k: 1387	n:900000
NTSR2   900000 perm   488 sec   (1846 perm/sec)   p_kst 1.541111e-03   p_cons 4.349944e-01   p_joint 5.707778e-03

Joint ci ratio: 5.494860e-02	ci left: 5.408684e-03	ci right 5.715355e-03	k: 5060	n:910000
Cons ci ratio: 4.682912e-03	ci left: 4.340129e-01	ci right 4.360512e-01	k: 395879	n:910000
KS ci ratio: 1.044618e-01	ci left: 1.464328e-03	ci right 1.626784e-03	k: 1405	n:910000
NTSR2   910000 perm   496 sec   (1833 perm/sec)   p_kst 1.543956e-03   p_cons 4.350319e-01   p_joint 5.560440e-03

Joint ci ratio: 5.664046e-02	ci left: 5.032615e-03	ci right 5.327036e-03	k: 4764	n:920000
Cons ci ratio: 4.657941e-03	ci left: 4.339606e-01	ci right 4.359877e-01	k: 400176	n:920000
KS ci ratio: 1.038724e-01	ci left: 1.465349e-03	ci right 1.626946e-03	k: 1421	n:920000
NTSR2   920000 perm   505 sec   (1820 perm/sec)   p_kst 1.544565e-03   p_cons 4.349739e-01   p_joint 5.178261e-03

Joint ci ratio: 5.670788e-02	ci left: 4.966835e-03	ci right 5.257765e-03	k: 4753	n:930000
Cons ci ratio: 4.632858e-03	ci left: 4.339631e-01	ci right 4.359793e-01	k: 404523	n:930000
KS ci ratio: 1.030777e-01	ci left: 1.472637e-03	ci right 1.633719e-03	k: 1443	n:930000
NTSR2   930000 perm   514 sec   (1808 perm/sec)   p_kst 1.551613e-03   p_cons 4.349710e-01   p_joint 5.110753e-03

Joint ci ratio: 5.652449e-02	ci left: 4.946507e-03	ci right 5.235279e-03	k: 4784	n:940000
Cons ci ratio: 4.607648e-03	ci left: 4.340219e-01	ci right 4.360274e-01	k: 408923	n:940000
KS ci ratio: 1.026876e-01	ci left: 1.468371e-03	ci right 1.628342e-03	k: 1454	n:940000
NTSR2   940000 perm   524 sec   (1795 perm/sec)   p_kst 1.546809e-03   p_cons 4.350245e-01   p_joint 5.089362e-03

Joint ci ratio: 5.626659e-02	ci left: 4.940101e-03	ci right 5.227140e-03	k: 4828	n:950000
Cons ci ratio: 4.583345e-03	ci left: 4.340259e-01	ci right 4.360208e-01	k: 413272	n:950000
KS ci ratio: 1.023718e-01	ci left: 1.462145e-03	ci right 1.620919e-03	k: 1463	n:950000
NTSR2   950000 perm   533 sec   (1783 perm/sec)   p_kst 1.540000e-03   p_cons 4.350232e-01   p_joint 5.082105e-03

Joint ci ratio: 5.604688e-02	ci left: 4.927668e-03	ci right 5.212831e-03	k: 4866	n:960000
Cons ci ratio: 4.560051e-03	ci left: 4.339622e-01	ci right 4.359466e-01	k: 417556	n:960000
KS ci ratio: 1.020936e-01	ci left: 1.455035e-03	ci right 1.612581e-03	k: 1471	n:960000
NTSR2   960000 perm   542 sec   (1771 perm/sec)   p_kst 1.532292e-03   p_cons 4.349542e-01   p_joint 5.068750e-03

Joint ci ratio: 5.592722e-02	ci left: 4.898212e-03	ci right 5.181045e-03	k: 4887	n:970000
Cons ci ratio: 4.536890e-03	ci left: 4.339234e-01	ci right 4.358976e-01	k: 421863	n:970000
KS ci ratio: 1.015432e-01	ci left: 1.456109e-03	ci right 1.612871e-03	k: 1487	n:970000
NTSR2   970000 perm   551 sec   (1759 perm/sec)   p_kst 1.532990e-03   p_cons 4.349103e-01   p_joint 5.038144e-03

Joint ci ratio: 5.566036e-02	ci left: 4.895520e-03	ci right 5.176806e-03	k: 4934	n:980000
Cons ci ratio: 4.513731e-03	ci left: 4.339233e-01	ci right 4.358873e-01	k: 426207	n:980000
KS ci ratio: 1.010016e-01	ci left: 1.457164e-03	ci right 1.613153e-03	k: 1503	n:980000
NTSR2   980000 perm   561 sec   (1746 perm/sec)   p_kst 1.533673e-03   p_cons 4.349051e-01   p_joint 5.034694e-03

Joint ci ratio: 5.348833e-02	ci left: 5.251599e-03	ci right 5.541206e-03	k: 5341	n:990000
Cons ci ratio: 4.491505e-03	ci left: 4.338595e-01	ci right 4.358136e-01	k: 430488	n:990000
KS ci ratio: 1.007345e-01	ci left: 1.450322e-03	ci right 1.605143e-03	k: 1511	n:990000
NTSR2   990000 perm   571 sec   (1735 perm/sec)   p_kst 1.526263e-03   p_cons 4.348364e-01   p_joint 5.394949e-03

Joint ci ratio: 5.321010e-02	ci left: 5.254336e-03	ci right 5.542540e-03	k: 5397	n:1000000
Cons ci ratio: 4.468967e-03	ci left: 4.338671e-01	ci right 4.358113e-01	k: 434839	n:1000000
KS ci ratio: 1.004033e-01	ci left: 1.445567e-03	ci right 1.599344e-03	k: 1521	n:1000000
NTSR2   1000000 perm   580 sec   (1723 perm/sec)   p_kst 1.521000e-03   p_cons 4.348390e-01   p_joint 5.397000e-03

Joint ci ratio: 5.296547e-02	ci left: 5.251160e-03	ci right 5.537826e-03	k: 5447	n:1010000
Cons ci ratio: 4.446577e-03	ci left: 4.338953e-01	ci right 4.358299e-01	k: 439211	n:1010000
KS ci ratio: 1.000426e-01	ci left: 1.441872e-03	ci right 1.594673e-03	k: 1532	n:1010000
NTSR2   1010000 perm   590 sec   (1711 perm/sec)   p_kst 1.516832e-03   p_cons 4.348624e-01   p_joint 5.393069e-03

Joint ci ratio: 5.111326e-02	ci left: 5.586758e-03	ci right 5.880765e-03	k: 5847	n:1020000
Cons ci ratio: 4.425438e-03	ci left: 4.338210e-01	ci right 4.357460e-01	k: 443479	n:1020000
KS ci ratio: 9.952453e-02	ci left: 1.443031e-03	ci right 1.595116e-03	k: 1548	n:1020000
NTSR2   1020000 perm   600 sec   (1700 perm/sec)   p_kst 1.517647e-03   p_cons 4.347833e-01   p_joint 5.732353e-03

Outputting figure to mutsig2_images.part000000000118/NTSR2.5_1249_1020000_0.0015176_0.43478_0.0057324.png
                gene_name: NTSR2
               theta_stop: 0.100 
                    nperm: 1020000 
                     p_ks: 0.0015 
        ci_ks_bounds_left: 0.0014 
       ci_ks_bounds_right: 0.0016 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.0057 
     ci_joint_bounds_left: 0.0056 
    ci_joint_bounds_right: 0.0059 

Current progress: 36 percent done.
NTNG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.580505e-02	ci left: 3.210824e-01	ci right 3.396165e-01	k: 3303	n:10000
Cons ci ratio: 1.105409e-01	ci left: 1.054923e-01	ci right 1.179349e-01	k: 1116	n:10000
KS ci ratio: 3.562533e-02	ci left: 5.377820e-01	ci right 5.573903e-01	k: 5476	n:10000
NTNG1   10000 perm   2 sec   (6077 perm/sec)   p_kst 5.476000e-01   p_cons 1.116000e-01   p_joint 3.303000e-01

Joint ci ratio: 4.384973e-02	ci left: 2.791974e-01	ci right 2.917650e-01	k: 5709	n:20000
Cons ci ratio: 7.890317e-02	ci left: 1.054990e-01	ci right 1.142147e-01	k: 2196	n:20000
KS ci ratio: 2.482611e-02	ci left: 5.479297e-01	ci right 5.617543e-01	k: 11097	n:20000
NTNG1   20000 perm   4 sec   (5436 perm/sec)   p_kst 5.548500e-01   p_cons 1.098000e-01   p_joint 2.854500e-01

Outputting figure to mutsig2_images.part000000000118/NTNG1.4_1782_20000_0.55485_0.1098_0.28545.png
                gene_name: NTNG1
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 38 percent done.
NTRK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.100581e-02	ci left: 6.054810e-01	ci right 6.246520e-01	k: 6151	n:10000
Cons ci ratio: 8.363681e-02	ci left: 1.725141e-01	ci right 1.876728e-01	k: 1800	n:10000
KS ci ratio: 3.442662e-02	ci left: 5.547144e-01	ci right 5.742480e-01	k: 5645	n:10000
NTRK2   10000 perm   2 sec   (5427 perm/sec)   p_kst 5.645000e-01   p_cons 1.800000e-01   p_joint 6.151000e-01

Outputting figure to mutsig2_images.part000000000118/NTRK2.4_2664_10000_0.5645_0.18_0.6151.png
                gene_name: NTRK2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.62 

Current progress: 39 percent done.
NUB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.541742e-02	ci left: 2.554791e-01	ci right 2.728584e-01	k: 2641	n:10000
Cons ci ratio: 5.192847e-02	ci left: 3.534668e-01	ci right 3.724131e-01	k: 3629	n:10000
KS ci ratio: 8.834118e-02	ci left: 1.571841e-01	ci right 1.718119e-01	k: 1644	n:10000
NUB1   10000 perm   2 sec   (6037 perm/sec)   p_kst 1.644000e-01   p_cons 3.629000e-01   p_joint 2.641000e-01

Outputting figure to mutsig2_images.part000000000118/NUB1.4_1862_10000_0.1644_0.3629_0.2641.png
                gene_name: NUB1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 41 percent done.
NUCB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.546220e-02	ci left: 8.585543e-01	ci right 8.720322e-01	k: 8654	n:10000
Cons ci ratio: 2.011987e-02	ci left: 7.834036e-01	ci right 7.994263e-01	k: 7915	n:10000
KS ci ratio: 2.502117e-02	ci left: 7.015006e-01	ci right 7.193767e-01	k: 7105	n:10000
NUCB1   10000 perm   2 sec   (5915 perm/sec)   p_kst 7.105000e-01   p_cons 7.915000e-01   p_joint 8.654000e-01

Outputting figure to mutsig2_images.part000000000118/NUCB1.4_1434_10000_0.7105_0.7915_0.8654.png
                gene_name: NUCB1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 43 percent done.
NUP153
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.819289e-02	ci left: 8.151724e-01	ci right 8.302391e-01	k: 8228	n:10000
Cons ci ratio: 5.182757e-02	ci left: 3.543616e-01	ci right 3.733178e-01	k: 3638	n:10000
KS ci ratio: 3.482032e-02	ci left: 5.491024e-01	ci right 5.686632e-01	k: 5589	n:10000
NUP153   10000 perm   2 sec   (4864 perm/sec)   p_kst 5.589000e-01   p_cons 3.638000e-01   p_joint 8.228000e-01

Outputting figure to mutsig2_images.part000000000118/NUP153.4_4516_10000_0.5589_0.3638_0.8228.png
                gene_name: NUP153
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 45 percent done.
NUP160
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.600000e-02	ci left: 1.359974e-01	ci right 1.498113e-01	k: 1428	n:10000
Cons ci ratio: 1.895761e-01	ci left: 3.710237e-02	ci right 4.496786e-02	k: 409	n:10000
KS ci ratio: 2.724192e-02	ci left: 6.650151e-01	ci right 6.834832e-01	k: 6743	n:10000
NUP160   10000 perm   2 sec   (4883 perm/sec)   p_kst 6.743000e-01   p_cons 4.090000e-02   p_joint 1.428000e-01

Joint ci ratio: 6.145320e-02	ci left: 1.638297e-01	ci right 1.742667e-01	k: 3380	n:20000
Cons ci ratio: 1.374079e-01	ci left: 3.640751e-02	ci right 4.182754e-02	k: 781	n:20000
KS ci ratio: 1.936017e-02	ci left: 6.655442e-01	ci right 6.786057e-01	k: 13442	n:20000
NUP160   20000 perm   5 sec   (4434 perm/sec)   p_kst 6.721000e-01   p_cons 3.905000e-02   p_joint 1.690000e-01

Joint ci ratio: 5.885141e-02	ci left: 1.250288e-01	ci right 1.326432e-01	k: 3864	n:30000
Cons ci ratio: 1.122936e-01	ci left: 3.683738e-02	ci right 4.125246e-02	k: 1170	n:30000
KS ci ratio: 1.589863e-02	ci left: 6.642111e-01	ci right 6.748893e-01	k: 20087	n:30000
NUP160   30000 perm   7 sec   (4246 perm/sec)   p_kst 6.695667e-01   p_cons 3.900000e-02   p_joint 1.288000e-01

Joint ci ratio: 4.511044e-02	ci left: 1.552059e-01	ci right 1.623937e-01	k: 6351	n:40000
Cons ci ratio: 9.709861e-02	ci left: 3.724591e-02	ci right 4.107136e-02	k: 1565	n:40000
KS ci ratio: 1.373890e-02	ci left: 6.658941e-01	ci right 6.751311e-01	k: 26821	n:40000
NUP160   40000 perm   10 sec   (4124 perm/sec)   p_kst 6.705250e-01   p_cons 3.912500e-02   p_joint 1.587750e-01

Outputting figure to mutsig2_images.part000000000118/NUP160.4_4455_40000_0.67053_0.039125_0.15877.png
                gene_name: NUP160
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 46 percent done.
NUP210
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.484493e-02	ci left: 7.044263e-01	ci right 7.222493e-01	k: 7134	n:10000
Cons ci ratio: 4.344381e-02	ci left: 4.389180e-01	ci right 4.585119e-01	k: 4487	n:10000
KS ci ratio: 3.245844e-02	ci left: 5.834959e-01	ci right 6.028498e-01	k: 5932	n:10000
NUP210   10000 perm   2 sec   (4672 perm/sec)   p_kst 5.932000e-01   p_cons 4.487000e-01   p_joint 7.134000e-01

Outputting figure to mutsig2_images.part000000000118/NUP210.4_5824_10000_0.5932_0.4487_0.7134.png
                gene_name: NUP210
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 48 percent done.
NUP85
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.234243e-03	ci left: 9.429466e-01	ci right 9.517905e-01	k: 9475	n:10000
Cons ci ratio: 3.800521e-02	ci left: 5.055515e-01	ci right 5.252395e-01	k: 5154	n:10000
KS ci ratio: 2.665473e-02	ci left: 6.745838e-01	ci right 6.929091e-01	k: 6838	n:10000
NUP85   10000 perm   2 sec   (5662 perm/sec)   p_kst 6.838000e-01   p_cons 5.154000e-01   p_joint 9.475000e-01

Outputting figure to mutsig2_images.part000000000118/NUP85.4_2047_10000_0.6838_0.5154_0.9475.png
                gene_name: NUP85
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 50 percent done.
NUP88
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.163074e-01	ci left: 9.603734e-02	ci right 1.079956e-01	k: 1019	n:10000
Cons ci ratio: 2.423184e-01	ci left: 2.240510e-02	ci right 2.867545e-02	k: 254	n:10000
KS ci ratio: 6.516600e-02	ci left: 2.569630e-01	ci right 2.743737e-01	k: 2656	n:10000
NUP88   10000 perm   2 sec   (5564 perm/sec)   p_kst 2.656000e-01   p_cons 2.540000e-02   p_joint 1.019000e-01

Joint ci ratio: 9.769493e-02	ci left: 7.084903e-02	ci right 7.817525e-02	k: 1489	n:20000
Cons ci ratio: 1.639141e-01	ci left: 2.551743e-02	ci right 3.012122e-02	k: 555	n:20000
KS ci ratio: 4.535856e-02	ci left: 2.656924e-01	ci right 2.780739e-01	k: 5437	n:20000
NUP88   20000 perm   4 sec   (5007 perm/sec)   p_kst 2.718500e-01   p_cons 2.775000e-02   p_joint 7.445000e-02

Joint ci ratio: 7.181857e-02	ci left: 8.707987e-02	ci right 9.359972e-02	k: 2709	n:30000
Cons ci ratio: 1.333438e-01	ci left: 2.613009e-02	ci right 2.989539e-02	k: 839	n:30000
KS ci ratio: 3.745754e-02	ci left: 2.623976e-01	ci right 2.724475e-01	k: 8022	n:30000
NUP88   30000 perm   6 sec   (4808 perm/sec)   p_kst 2.674000e-01   p_cons 2.796667e-02   p_joint 9.030000e-02

Joint ci ratio: 6.181527e-02	ci left: 8.851920e-02	ci right 9.419029e-02	k: 3653	n:40000
Cons ci ratio: 1.147438e-01	ci left: 2.672103e-02	ci right 2.999792e-02	k: 1133	n:40000
KS ci ratio: 3.242750e-02	ci left: 2.632163e-01	ci right 2.719175e-01	k: 10702	n:40000
NUP88   40000 perm   9 sec   (4677 perm/sec)   p_kst 2.675500e-01   p_cons 2.832500e-02   p_joint 9.132500e-02

Joint ci ratio: 6.022177e-02	ci left: 7.576258e-02	ci right 8.048654e-02	k: 3905	n:50000
Cons ci ratio: 1.024630e-01	ci left: 2.698092e-02	ci right 2.991417e-02	k: 1421	n:50000
KS ci ratio: 2.911360e-02	ci left: 2.622103e-01	ci right 2.699769e-01	k: 13304	n:50000
NUP88   50000 perm   11 sec   (4570 perm/sec)   p_kst 2.660800e-01   p_cons 2.842000e-02   p_joint 7.810000e-02

Joint ci ratio: 5.490620e-02	ci left: 7.614609e-02	ci right 8.046147e-02	k: 4697	n:60000
Cons ci ratio: 9.727879e-02	ci left: 2.506671e-02	ci right 2.764605e-02	k: 1580	n:60000
KS ci ratio: 2.690404e-02	ci left: 2.578211e-01	ci right 2.648687e-01	k: 15680	n:60000
NUP88   60000 perm   13 sec   (4473 perm/sec)   p_kst 2.613333e-01   p_cons 2.633333e-02   p_joint 7.828333e-02

Outputting figure to mutsig2_images.part000000000118/NUP88.4_2294_60000_0.26133_0.026333_0.078283.png
                gene_name: NUP88
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.080 

Current progress: 52 percent done.
NUP93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.011454e-02	ci left: 3.699753e-01	ci right 3.890950e-01	k: 3795	n:10000
Cons ci ratio: 6.864576e-02	ci left: 2.373862e-01	ci right 2.543621e-01	k: 2458	n:10000
KS ci ratio: 5.105301e-02	ci left: 3.613218e-01	ci right 3.803535e-01	k: 3708	n:10000
NUP93   10000 perm   2 sec   (5675 perm/sec)   p_kst 3.708000e-01   p_cons 2.458000e-01   p_joint 3.795000e-01

Outputting figure to mutsig2_images.part000000000118/NUP93.4_2544_10000_0.3708_0.2458_0.3795.png
                gene_name: NUP93
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 54 percent done.
NUAK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.314654e-02	ci left: 4.423104e-01	ci right 4.619175e-01	k: 4521	n:10000
KS ci ratio: 1.909731e-02	ci left: 8.003440e-01	ci right 8.158761e-01	k: 8082	n:10000
NUAK2   10000 perm   2 sec   (5877 perm/sec)   p_kst 8.082000e-01   p_cons 4.521000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUAK2.3_1915_10000_0.8082_0.4521_1.png
                gene_name: NUAK2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
NUDCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.401013e-02	ci left: 4.325336e-01	ci right 4.521000e-01	k: 4423	n:10000
KS ci ratio: 1.827391e-02	ci left: 8.138514e-01	ci right 8.289609e-01	k: 8215	n:10000
NUDCD1   10000 perm   2 sec   (6222 perm/sec)   p_kst 8.215000e-01   p_cons 4.423000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUDCD1.3_1827_10000_0.8215_0.4423_1.png
                gene_name: NUDCD1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
NUFIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.362938e-02	ci left: 8.859570e-01	ci right 8.982135e-01	k: 8922	n:10000
KS ci ratio: 2.232405e-02	ci left: 7.465480e-01	ci right 7.635031e-01	k: 7551	n:10000
NUFIP2   10000 perm   2 sec   (5889 perm/sec)   p_kst 7.551000e-01   p_cons 8.922000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUFIP2.3_2104_10000_0.7551_0.8922_1.png
                gene_name: NUFIP2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
NUMBL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.105377e-02	ci left: 2.829019e-01	ci right 3.008195e-01	k: 2918	n:10000
Cons ci ratio: 7.411193e-02	ci left: 2.104338e-01	ci right 2.267305e-01	k: 2185	n:10000
KS ci ratio: 9.764019e-02	ci left: 1.319816e-01	ci right 1.456295e-01	k: 1387	n:10000
NUMBL   10000 perm   2 sec   (5986 perm/sec)   p_kst 1.387000e-01   p_cons 2.185000e-01   p_joint 2.918000e-01

Outputting figure to mutsig2_images.part000000000118/NUMBL.3_1870_10000_0.1387_0.2185_0.2918.png
                gene_name: NUMBL
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 61 percent done.
NUP54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.112090e-02	ci left: 2.246444e-01	ci right 2.413115e-01	k: 2329	n:10000
Cons ci ratio: 1.535246e-01	ci left: 5.648398e-02	ci right 6.597362e-02	k: 611	n:10000
KS ci ratio: 2.589946e-02	ci left: 6.869792e-01	ci right 7.051065e-01	k: 6961	n:10000
NUP54   10000 perm   2 sec   (6136 perm/sec)   p_kst 6.961000e-01   p_cons 6.110000e-02   p_joint 2.329000e-01

Joint ci ratio: 5.385872e-02	ci left: 2.037291e-01	ci right 2.150555e-01	k: 4187	n:20000
Cons ci ratio: 1.097109e-01	ci left: 5.669910e-02	ci right 6.332954e-02	k: 1199	n:20000
KS ci ratio: 1.841598e-02	ci left: 6.873091e-01	ci right 7.001346e-01	k: 13875	n:20000
NUP54   20000 perm   4 sec   (5488 perm/sec)   p_kst 6.937500e-01   p_cons 5.995000e-02   p_joint 2.093500e-01

Joint ci ratio: 4.294424e-02	ci left: 2.126772e-01	ci right 2.220443e-01	k: 6520	n:30000
Cons ci ratio: 8.918459e-02	ci left: 5.779553e-02	ci right 6.322330e-02	k: 1814	n:30000
KS ci ratio: 1.501256e-02	ci left: 6.891854e-01	ci right 6.996436e-01	k: 20833	n:30000
NUP54   30000 perm   6 sec   (5238 perm/sec)   p_kst 6.944333e-01   p_cons 6.046667e-02   p_joint 2.173333e-01

Outputting figure to mutsig2_images.part000000000118/NUP54.3_1572_30000_0.69443_0.060467_0.21733.png
                gene_name: NUP54
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 62 percent done.
NUP62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.121321e-02	ci left: 4.650710e-01	ci right 4.847436e-01	k: 4749	n:10000
Cons ci ratio: 2.881942e-02	ci left: 6.396537e-01	ci right 6.584594e-01	k: 6491	n:10000
KS ci ratio: 6.046824e-02	ci left: 2.868652e-01	ci right 3.048539e-01	k: 2958	n:10000
NUP62   10000 perm   2 sec   (6004 perm/sec)   p_kst 2.958000e-01   p_cons 6.491000e-01   p_joint 4.749000e-01

Outputting figure to mutsig2_images.part000000000118/NUP62.3_1573_10000_0.2958_0.6491_0.4749.png
                gene_name: NUP62
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 64 percent done.
NUPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.704001e-02	ci left: 8.337856e-01	ci right 8.482152e-01	k: 8411	n:10000
Cons ci ratio: 4.630365e-02	ci left: 4.077101e-01	ci right 4.271381e-01	k: 4174	n:10000
KS ci ratio: 1.251182e-02	ci left: 9.017548e-01	ci right 9.132066e-01	k: 9076	n:10000
NUPL2   10000 perm   2 sec   (6314 perm/sec)   p_kst 9.076000e-01   p_cons 4.174000e-01   p_joint 8.411000e-01

Outputting figure to mutsig2_images.part000000000118/NUPL2.3_1300_10000_0.9076_0.4174_0.8411.png
                gene_name: NUPL2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 66 percent done.
NTNG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.988259e-02	ci left: 1.525700e-01	ci right 1.670288e-01	k: 1597	n:10000
Cons ci ratio: 1.300347e-01	ci left: 7.785885e-02	ci right 8.878533e-02	k: 832	n:10000
KS ci ratio: 1.105967e-01	ci left: 1.053948e-01	ci right 1.178325e-01	k: 1115	n:10000
NTNG2   10000 perm   2 sec   (6313 perm/sec)   p_kst 1.115000e-01   p_cons 8.320000e-02   p_joint 1.597000e-01

Joint ci ratio: 6.419219e-02	ci left: 1.520819e-01	ci right 1.622180e-01	k: 3142	n:20000
Cons ci ratio: 9.255771e-02	ci left: 7.847822e-02	ci right 8.614373e-02	k: 1645	n:20000
KS ci ratio: 7.930929e-02	ci left: 1.045165e-01	ci right 1.131975e-01	k: 2176	n:20000
NTNG2   20000 perm   4 sec   (5611 perm/sec)   p_kst 1.088000e-01   p_cons 8.225000e-02   p_joint 1.571000e-01

Outputting figure to mutsig2_images.part000000000118/NTNG2.2_1621_20000_0.1088_0.08225_0.1571.png
                gene_name: NTNG2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 68 percent done.
NTS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.998584e-02	ci left: 4.801563e-01	ci right 4.998496e-01	k: 4900	n:10000
Cons ci ratio: 9.381559e-03	ci left: 9.412847e-01	ci right 9.502533e-01	k: 9459	n:10000
KS ci ratio: 1.016296e-01	ci left: 1.228802e-01	ci right 1.361365e-01	k: 1294	n:10000
NTS   10000 perm   1 sec   (6903 perm/sec)   p_kst 1.294000e-01   p_cons 9.459000e-01   p_joint 4.900000e-01

Joint ci ratio: 1.059702e-02	ci left: 8.677984e-01	ci right 8.770931e-01	k: 17450	n:20000
Cons ci ratio: 6.291055e-03	ci left: 9.479685e-01	ci right 9.539995e-01	k: 19021	n:20000
KS ci ratio: 7.241124e-02	ci left: 1.231530e-01	ci right 1.324555e-01	k: 2555	n:20000
NTS   20000 perm   3 sec   (6204 perm/sec)   p_kst 1.277500e-01   p_cons 9.510500e-01   p_joint 8.725000e-01

Outputting figure to mutsig2_images.part000000000118/NTS.2_529_20000_0.12775_0.95105_0.8725.png
                gene_name: NTS
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 70 percent done.
NUBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.542238e-02	ci left: 8.591667e-01	ci right 8.726194e-01	k: 8660	n:10000
KS ci ratio: 4.306825e-02	ci left: 4.432085e-01	ci right 4.628189e-01	k: 4530	n:10000
NUBP1   10000 perm   2 sec   (6657 perm/sec)   p_kst 4.530000e-01   p_cons 8.660000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUBP1.2_1007_10000_0.453_0.866_1.png
                gene_name: NUBP1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
NUCB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
KS ci ratio: 2.852276e-02	ci left: 6.443816e-01	ci right 6.631288e-01	k: 6538	n:10000
NUCB2   10000 perm   2 sec   (6408 perm/sec)   p_kst 6.538000e-01   p_cons 1.072000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.953495e-02	ci left: 1.039762e-01	ci right 1.126380e-01	k: 2165	n:20000
KS ci ratio: 2.006710e-02	ci left: 6.494695e-01	ci right 6.626851e-01	k: 13122	n:20000
NUCB2   20000 perm   4 sec   (5232 perm/sec)   p_kst 6.561000e-01   p_cons 1.082500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUCB2.2_1311_20000_0.6561_0.10825_1.png
                gene_name: NUCB2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
NUDT12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.725017e-01	ci left: 4.485094e-02	ci right 5.341415e-02	k: 490	n:10000
Cons ci ratio: 1.270626e-01	ci left: 8.135280e-02	ci right 9.248921e-02	k: 868	n:10000
KS ci ratio: 1.465098e-01	ci left: 6.188659e-02	ci right 7.176758e-02	k: 667	n:10000
NUDT12   10000 perm   2 sec   (6429 perm/sec)   p_kst 6.670000e-02   p_cons 8.680000e-02   p_joint 4.900000e-02

Joint ci ratio: 8.322351e-02	ci left: 9.567937e-02	ci right 1.040374e-01	k: 1996	n:20000
Cons ci ratio: 8.990531e-02	ci left: 8.288439e-02	ci right 9.073622e-02	k: 1735	n:20000
KS ci ratio: 1.052995e-01	ci left: 6.137797e-02	ci right 6.824922e-02	k: 1295	n:20000
NUDT12   20000 perm   4 sec   (5697 perm/sec)   p_kst 6.475000e-02   p_cons 8.675000e-02   p_joint 9.980000e-02

Joint ci ratio: 3.021994e-02	ci left: 3.538679e-01	ci right 3.647594e-01	k: 10779	n:30000
Cons ci ratio: 7.356266e-02	ci left: 8.327703e-02	ci right 8.966998e-02	k: 2593	n:30000
KS ci ratio: 8.750336e-02	ci left: 5.994991e-02	ci right 6.546848e-02	k: 1880	n:30000
NUDT12   30000 perm   6 sec   (5403 perm/sec)   p_kst 6.266667e-02   p_cons 8.643333e-02   p_joint 3.593000e-01

Outputting figure to mutsig2_images.part000000000118/NUDT12.2_1413_30000_0.062667_0.086433_0.3593.png
                gene_name: NUDT12
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 75 percent done.
NUDT13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.754004e-02	ci left: 6.601821e-01	ci right 6.787191e-01	k: 6695	n:10000
KS ci ratio: 2.138192e-02	ci left: 7.623325e-01	ci right 7.789096e-01	k: 7707	n:10000
NUDT13   10000 perm   2 sec   (6589 perm/sec)   p_kst 7.707000e-01   p_cons 6.695000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUDT13.2_1091_10000_0.7707_0.6695_1.png
                gene_name: NUDT13
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
NUDT15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
Cons ci ratio: 3.578376e-02	ci left: 5.355786e-01	ci right 5.551949e-01	k: 5454	n:10000
KS ci ratio: 4.737275e-01	ci left: 5.196070e-03	ci right 8.501060e-03	k: 67	n:10000
NUDT15   10000 perm   1 sec   (7382 perm/sec)   p_kst 6.700000e-03   p_cons 5.454000e-01   p_joint 4.200000e-02

Joint ci ratio: 1.118587e-01	ci left: 5.460525e-02	ci right 6.112403e-02	k: 1156	n:20000
Cons ci ratio: 2.508597e-02	ci left: 5.427730e-01	ci right 5.566126e-01	k: 10994	n:20000
KS ci ratio: 3.613336e-01	ci left: 4.794950e-03	ci right 6.952521e-03	k: 116	n:20000
NUDT15   20000 perm   3 sec   (6381 perm/sec)   p_kst 5.800000e-03   p_cons 5.497000e-01   p_joint 5.780000e-02

Joint ci ratio: 3.535507e-02	ci left: 2.854991e-01	ci right 2.958081e-01	k: 8719	n:30000
Cons ci ratio: 2.046376e-02	ci left: 5.445160e-01	ci right 5.558076e-01	k: 16505	n:30000
KS ci ratio: 2.929386e-01	ci left: 5.064840e-03	ci right 6.832899e-03	k: 177	n:30000
NUDT15   30000 perm   5 sec   (6004 perm/sec)   p_kst 5.900000e-03   p_cons 5.501667e-01   p_joint 2.906333e-01

Joint ci ratio: 4.913521e-02	ci left: 1.338917e-01	ci right 1.406611e-01	k: 5490	n:40000
Cons ci ratio: 1.777041e-02	ci left: 5.439326e-01	ci right 5.537103e-01	k: 21953	n:40000
KS ci ratio: 2.629550e-01	ci left: 4.798815e-03	ci right 6.274366e-03	k: 220	n:40000
NUDT15   40000 perm   7 sec   (5773 perm/sec)   p_kst 5.500000e-03   p_cons 5.488250e-01   p_joint 1.372500e-01

Joint ci ratio: 2.578366e-02	ci left: 3.120453e-01	ci right 3.202161e-01	k: 15806	n:50000
Cons ci ratio: 1.589910e-02	ci left: 5.443055e-01	ci right 5.530489e-01	k: 27434	n:50000
KS ci ratio: 2.361638e-01	ci left: 4.832940e-03	ci right 6.145478e-03	k: 273	n:50000
NUDT15   50000 perm   9 sec   (5596 perm/sec)   p_kst 5.460000e-03   p_cons 5.486800e-01   p_joint 3.161200e-01

Joint ci ratio: 2.305887e-02	ci left: 3.213190e-01	ci right 3.288313e-01	k: 19504	n:60000
Cons ci ratio: 1.447720e-02	ci left: 5.459419e-01	ci right 5.539199e-01	k: 32996	n:60000
KS ci ratio: 2.165163e-01	ci left: 4.845061e-03	ci right 6.036878e-03	k: 325	n:60000
NUDT15   60000 perm   11 sec   (5443 perm/sec)   p_kst 5.416667e-03   p_cons 5.499333e-01   p_joint 3.250667e-01

Joint ci ratio: 2.175293e-02	ci left: 3.134396e-01	ci right 3.203470e-01	k: 22182	n:70000
Cons ci ratio: 1.338760e-02	ci left: 5.468201e-01	ci right 5.542043e-01	k: 38536	n:70000
KS ci ratio: 1.974334e-01	ci left: 5.047041e-03	ci right 6.165969e-03	k: 391	n:70000
NUDT15   70000 perm   13 sec   (5309 perm/sec)   p_kst 5.585714e-03   p_cons 5.505143e-01   p_joint 3.168857e-01

Joint ci ratio: 2.128245e-02	ci left: 2.946074e-01	ci right 3.009573e-01	k: 23822	n:80000
Cons ci ratio: 1.252239e-02	ci left: 5.470825e-01	ci right 5.539889e-01	k: 44043	n:80000
KS ci ratio: 1.867902e-01	ci left: 4.963500e-03	ci right 5.997860e-03	k: 437	n:80000
NUDT15   80000 perm   15 sec   (5187 perm/sec)   p_kst 5.462500e-03   p_cons 5.505375e-01   p_joint 2.977750e-01

Joint ci ratio: 3.611226e-02	ci left: 1.136722e-01	ci right 1.178637e-01	k: 10418	n:90000
Cons ci ratio: 1.180237e-02	ci left: 5.474431e-01	ci right 5.539536e-01	k: 49563	n:90000
KS ci ratio: 1.766038e-01	ci left: 4.963514e-03	ci right 5.935447e-03	k: 489	n:90000
NUDT15   90000 perm   18 sec   (5078 perm/sec)   p_kst 5.433333e-03   p_cons 5.507000e-01   p_joint 1.157556e-01

Joint ci ratio: 1.908888e-02	ci left: 2.937799e-01	ci right 2.994519e-01	k: 29661	n:100000
Cons ci ratio: 1.119379e-02	ci left: 5.477406e-01	ci right 5.539164e-01	k: 55083	n:100000
KS ci ratio: 1.651849e-01	ci left: 5.137287e-03	ci right 6.071741e-03	k: 559	n:100000
NUDT15   100000 perm   20 sec   (4980 perm/sec)   p_kst 5.590000e-03   p_cons 5.508300e-01   p_joint 2.966100e-01

Joint ci ratio: 1.817804e-02	ci left: 2.944275e-01	ci right 2.998377e-01	k: 32684	n:110000
Cons ci ratio: 1.066215e-02	ci left: 5.483823e-01	ci right 5.542696e-01	k: 60646	n:110000
KS ci ratio: 1.573693e-01	ci left: 5.167543e-03	ci right 6.058828e-03	k: 616	n:110000
NUDT15   110000 perm   23 sec   (4883 perm/sec)   p_kst 5.600000e-03   p_cons 5.513273e-01   p_joint 2.971273e-01

Joint ci ratio: 1.802975e-02	ci left: 2.800452e-01	ci right 2.851486e-01	k: 33911	n:120000
Cons ci ratio: 1.020811e-02	ci left: 5.485139e-01	ci right 5.541502e-01	k: 66160	n:120000
KS ci ratio: 1.501202e-01	ci left: 5.225710e-03	ci right 6.081779e-03	k: 677	n:120000
NUDT15   120000 perm   25 sec   (4799 perm/sec)   p_kst 5.641667e-03   p_cons 5.513333e-01   p_joint 2.825917e-01

Joint ci ratio: 2.986873e-02	ci left: 1.152422e-01	ci right 1.187441e-01	k: 15208	n:130000
Cons ci ratio: 9.813342e-03	ci left: 5.483374e-01	ci right 5.537526e-01	k: 71636	n:130000
KS ci ratio: 1.440830e-01	ci left: 5.253474e-03	ci right 6.076504e-03	k: 735	n:130000
NUDT15   130000 perm   28 sec   (4706 perm/sec)   p_kst 5.653846e-03   p_cons 5.510462e-01   p_joint 1.169846e-01

Joint ci ratio: 2.878813e-02	ci left: 1.152639e-01	ci right 1.186377e-01	k: 16372	n:140000
Cons ci ratio: 9.454259e-03	ci left: 5.485472e-01	ci right 5.537650e-01	k: 77162	n:140000
KS ci ratio: 1.388080e-01	ci left: 5.270967e-03	ci right 6.064004e-03	k: 792	n:140000
NUDT15   140000 perm   30 sec   (4621 perm/sec)   p_kst 5.657143e-03   p_cons 5.511571e-01   p_joint 1.169429e-01

Joint ci ratio: 2.784029e-02	ci left: 1.151124e-01	ci right 1.183691e-01	k: 17510	n:150000
Cons ci ratio: 9.132650e-03	ci left: 5.486920e-01	ci right 5.537327e-01	k: 82682	n:150000
KS ci ratio: 1.340730e-01	ci left: 5.286602e-03	ci right 6.052696e-03	k: 849	n:150000
NUDT15   150000 perm   33 sec   (4537 perm/sec)   p_kst 5.660000e-03   p_cons 5.512133e-01   p_joint 1.167333e-01

Joint ci ratio: 1.503325e-02	ci left: 2.959777e-01	ci right 3.004671e-01	k: 47715	n:160000
Cons ci ratio: 8.837533e-03	ci left: 5.490590e-01	ci right 5.539391e-01	k: 88240	n:160000
KS ci ratio: 1.300804e-01	ci left: 5.276493e-03	ci right 6.016593e-03	k: 902	n:160000
NUDT15   160000 perm   36 sec   (4456 perm/sec)   p_kst 5.637500e-03   p_cons 5.515000e-01   p_joint 2.982187e-01

Joint ci ratio: 2.618563e-02	ci left: 1.149434e-01	ci right 1.179991e-01	k: 19799	n:170000
Cons ci ratio: 8.588667e-03	ci left: 5.482669e-01	ci right 5.530019e-01	k: 93608	n:170000
KS ci ratio: 1.260933e-01	ci left: 5.296360e-03	ci right 6.014774e-03	k: 960	n:170000
NUDT15   170000 perm   39 sec   (4379 perm/sec)   p_kst 5.647059e-03   p_cons 5.506353e-01   p_joint 1.164647e-01

Joint ci ratio: 1.432745e-02	ci left: 2.916131e-01	ci right 2.958269e-01	k: 52869	n:180000
Cons ci ratio: 8.344753e-03	ci left: 5.484485e-01	ci right 5.530499e-01	k: 99135	n:180000
KS ci ratio: 1.222108e-01	ci left: 5.335873e-03	ci right 6.035748e-03	k: 1022	n:180000
NUDT15   180000 perm   42 sec   (4304 perm/sec)   p_kst 5.677778e-03   p_cons 5.507500e-01   p_joint 2.937167e-01

Joint ci ratio: 1.316878e-02	ci left: 3.159429e-01	ci right 3.201363e-01	k: 60427	n:190000
Cons ci ratio: 8.125688e-03	ci left: 5.482967e-01	ci right 5.527754e-01	k: 104602	n:190000
KS ci ratio: 1.184467e-01	ci left: 5.391960e-03	ci right 6.075884e-03	k: 1088	n:190000
NUDT15   190000 perm   45 sec   (4233 perm/sec)   p_kst 5.726316e-03   p_cons 5.505368e-01   p_joint 3.180368e-01

Joint ci ratio: 1.282609e-02	ci left: 3.163086e-01	ci right 3.203967e-01	k: 63670	n:200000
Cons ci ratio: 7.916133e-03	ci left: 5.485918e-01	ci right 5.529567e-01	k: 110155	n:200000
KS ci ratio: 1.158198e-01	ci left: 5.365033e-03	ci right 6.029417e-03	k: 1138	n:200000
NUDT15   200000 perm   48 sec   (4160 perm/sec)   p_kst 5.690000e-03   p_cons 5.507750e-01   p_joint 3.183500e-01

Joint ci ratio: 1.312945e-02	ci left: 2.960300e-01	ci right 2.999471e-01	k: 62577	n:210000
Cons ci ratio: 7.720731e-03	ci left: 5.489410e-01	ci right 5.532004e-01	k: 115725	n:210000
KS ci ratio: 1.132646e-01	ci left: 5.350078e-03	ci right 5.997015e-03	k: 1190	n:210000
NUDT15   210000 perm   51 sec   (4095 perm/sec)   p_kst 5.666667e-03   p_cons 5.510714e-01   p_joint 2.979857e-01

Joint ci ratio: 1.294986e-02	ci left: 2.921284e-01	ci right 2.959406e-01	k: 64687	n:220000
Cons ci ratio: 7.545766e-03	ci left: 5.488231e-01	ci right 5.529846e-01	k: 121199	n:220000
KS ci ratio: 1.106477e-01	ci left: 5.358729e-03	ci right 5.990766e-03	k: 1247	n:220000
NUDT15   220000 perm   55 sec   (4025 perm/sec)   p_kst 5.668182e-03   p_cons 5.509045e-01   p_joint 2.940318e-01

Joint ci ratio: 1.300030e-02	ci left: 2.814677e-01	ci right 2.851551e-01	k: 65161	n:230000
Cons ci ratio: 7.383801e-03	ci left: 5.486078e-01	ci right 5.526779e-01	k: 126648	n:230000
KS ci ratio: 1.082877e-01	ci left: 5.358324e-03	ci right 5.975973e-03	k: 1302	n:230000
NUDT15   230000 perm   58 sec   (3962 perm/sec)   p_kst 5.660870e-03   p_cons 5.506435e-01   p_joint 2.833087e-01

Joint ci ratio: 1.240524e-02	ci left: 2.919864e-01	ci right 2.956353e-01	k: 70514	n:240000
Cons ci ratio: 7.233112e-03	ci left: 5.483238e-01	ci right 5.523084e-01	k: 132076	n:240000
KS ci ratio: 1.060333e-01	ci left: 5.362140e-03	ci right 5.966559e-03	k: 1358	n:240000
NUDT15   240000 perm   61 sec   (3904 perm/sec)   p_kst 5.658333e-03   p_cons 5.503167e-01   p_joint 2.938083e-01

Joint ci ratio: 1.204055e-02	ci left: 2.959439e-01	ci right 2.995328e-01	k: 74434	n:250000
Cons ci ratio: 7.085839e-03	ci left: 5.484434e-01	ci right 5.523474e-01	k: 137599	n:250000
KS ci ratio: 1.036199e-01	ci left: 5.396948e-03	ci right 5.990600e-03	k: 1422	n:250000
NUDT15   250000 perm   65 sec   (3848 perm/sec)   p_kst 5.688000e-03   p_cons 5.503960e-01   p_joint 2.977360e-01

Joint ci ratio: 1.193430e-02	ci left: 2.915120e-01	ci right 2.950157e-01	k: 76248	n:260000
Cons ci ratio: 6.951908e-03	ci left: 5.482199e-01	ci right 5.520482e-01	k: 143035	n:260000
KS ci ratio: 1.021618e-01	ci left: 5.343000e-03	ci right 5.921950e-03	k: 1463	n:260000
NUDT15   260000 perm   69 sec   (3791 perm/sec)   p_kst 5.626923e-03   p_cons 5.501346e-01   p_joint 2.932615e-01

Joint ci ratio: 1.170365e-02	ci left: 2.918123e-01	ci right 2.952514e-01	k: 79253	n:270000
Cons ci ratio: 6.816819e-03	ci left: 5.486287e-01	ci right 5.523850e-01	k: 148637	n:270000
KS ci ratio: 1.003287e-01	ci left: 5.340046e-03	ci right 5.907682e-03	k: 1517	n:270000
NUDT15   270000 perm   72 sec   (3736 perm/sec)   p_kst 5.618519e-03   p_cons 5.505074e-01   p_joint 2.935296e-01

Joint ci ratio: 1.149892e-02	ci left: 2.916212e-01	ci right 2.949974e-01	k: 82126	n:280000
Cons ci ratio: 6.696501e-03	ci left: 5.484765e-01	ci right 5.521653e-01	k: 154090	n:280000
KS ci ratio: 9.855930e-02	ci left: 5.340873e-03	ci right 5.898006e-03	k: 1572	n:280000
NUDT15   280000 perm   76 sec   (3683 perm/sec)   p_kst 5.614286e-03   p_cons 5.503214e-01   p_joint 2.933071e-01

Outputting figure to mutsig2_images.part000000000118/NUDT15.2_507_280000_0.0056143_0.55032_0.29331.png
                gene_name: NUDT15
               theta_stop: 0.099 
                    nperm: 280000 
                     p_ks: 0.0056 
        ci_ks_bounds_left: 0.0053 
       ci_ks_bounds_right: 0.0059 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.29 

Current progress: 79 percent done.
NUDT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.302394e-02	ci left: 7.348207e-01	ci right 7.520373e-01	k: 7435	n:10000
KS ci ratio: 1.569355e-02	ci left: 8.549826e-01	ci right 8.686059e-01	k: 8619	n:10000
NUDT7   10000 perm   1 sec   (6812 perm/sec)   p_kst 8.619000e-01   p_cons 7.435000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUDT7.2_733_10000_0.8619_0.7435_1.png
                gene_name: NUDT7
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
NUDT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.112175e-02	ci left: 7.666861e-01	ci right 7.831535e-01	k: 7750	n:10000
KS ci ratio: 4.019438e-02	ci left: 4.775582e-01	ci right 4.972492e-01	k: 4874	n:10000
NUDT9   10000 perm   2 sec   (6590 perm/sec)   p_kst 4.874000e-01   p_cons 7.750000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NUDT9.2_1085_10000_0.4874_0.775_1.png
                gene_name: NUDT9
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
NUFIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.208622e-01	ci left: 6.794980e-03	ci right 1.049980e-02	k: 85	n:10000
Cons ci ratio: 2.209987e-01	ci left: 2.712237e-02	ci right 3.395474e-02	k: 304	n:10000
KS ci ratio: 2.801592e-01	ci left: 1.650803e-02	ci right 2.197711e-02	k: 191	n:10000
NUFIP1   10000 perm   2 sec   (6495 perm/sec)   p_kst 1.910000e-02   p_cons 3.040000e-02   p_joint 8.500000e-03

Joint ci ratio: 4.487885e-01	ci left: 2.950721e-03	ci right 4.698422e-03	k: 75	n:20000
Cons ci ratio: 1.541997e-01	ci left: 2.888197e-02	ci right 3.375555e-02	k: 625	n:20000
KS ci ratio: 2.058973e-01	ci left: 1.596539e-02	ci right 1.967668e-02	k: 355	n:20000
NUFIP1   20000 perm   3 sec   (5775 perm/sec)   p_kst 1.775000e-02   p_cons 3.125000e-02   p_joint 3.750000e-03

Joint ci ratio: 2.937699e-01	ci left: 5.033948e-03	ci right 6.797138e-03	k: 176	n:30000
Cons ci ratio: 1.266724e-01	ci left: 2.897069e-02	ci right 3.292083e-02	k: 927	n:30000
KS ci ratio: 1.682762e-01	ci left: 1.627003e-02	ci right 1.929105e-02	k: 532	n:30000
NUFIP1   30000 perm   5 sec   (5489 perm/sec)   p_kst 1.773333e-02   p_cons 3.090000e-02   p_joint 5.866667e-03

Joint ci ratio: 2.915178e-01	ci left: 3.844594e-03	ci right 5.178911e-03	k: 179	n:40000
Cons ci ratio: 1.097630e-01	ci left: 2.920146e-02	ci right 3.261709e-02	k: 1235	n:40000
KS ci ratio: 1.461163e-01	ci left: 1.638221e-02	ci right 1.898849e-02	k: 706	n:40000
NUFIP1   40000 perm   8 sec   (5302 perm/sec)   p_kst 1.765000e-02   p_cons 3.087500e-02   p_joint 4.475000e-03

Joint ci ratio: 2.745683e-01	ci left: 3.502960e-03	ci right 4.635813e-03	k: 202	n:50000
Cons ci ratio: 9.840553e-02	ci left: 2.924431e-02	ci right 3.229050e-02	k: 1537	n:50000
KS ci ratio: 1.306719e-01	ci left: 1.652358e-02	ci right 1.885290e-02	k: 883	n:50000
NUFIP1   50000 perm   10 sec   (5155 perm/sec)   p_kst 1.766000e-02   p_cons 3.074000e-02   p_joint 4.040000e-03

Joint ci ratio: 2.425788e-01	ci left: 3.807855e-03	ci right 4.874298e-03	k: 259	n:60000
Cons ci ratio: 8.989704e-02	ci left: 2.933411e-02	ci right 3.211153e-02	k: 1842	n:60000
KS ci ratio: 1.188201e-01	ci left: 1.675705e-02	ci right 1.888996e-02	k: 1068	n:60000
NUFIP1   60000 perm   12 sec   (5027 perm/sec)   p_kst 1.780000e-02   p_cons 3.070000e-02   p_joint 4.316667e-03

Joint ci ratio: 2.099129e-01	ci left: 4.436791e-03	ci right 5.490602e-03	k: 346	n:70000
Cons ci ratio: 8.317206e-02	ci left: 2.947643e-02	ci right 3.204838e-02	k: 2152	n:70000
KS ci ratio: 1.101937e-01	ci left: 1.677778e-02	ci right 1.874820e-02	k: 1242	n:70000
NUFIP1   70000 perm   14 sec   (4912 perm/sec)   p_kst 1.774286e-02   p_cons 3.074286e-02   p_joint 4.942857e-03

Joint ci ratio: 2.090727e-01	ci left: 3.917612e-03	ci right 4.843897e-03	k: 349	n:80000
Cons ci ratio: 7.845366e-02	ci left: 2.907396e-02	ci right 3.146027e-02	k: 2420	n:80000
KS ci ratio: 1.032833e-01	ci left: 1.677319e-02	ci right 1.861203e-02	k: 1414	n:80000
NUFIP1   80000 perm   17 sec   (4815 perm/sec)   p_kst 1.767500e-02   p_cons 3.025000e-02   p_joint 4.362500e-03

Joint ci ratio: 1.973046e-01	ci left: 3.935810e-03	ci right 4.807721e-03	k: 392	n:90000
Cons ci ratio: 7.405980e-02	ci left: 2.906971e-02	ci right 3.131626e-02	k: 2716	n:90000
KS ci ratio: 9.812828e-02	ci left: 1.656661e-02	ci right 1.828692e-02	k: 1567	n:90000
NUFIP1   90000 perm   19 sec   (4714 perm/sec)   p_kst 1.741111e-02   p_cons 3.017778e-02   p_joint 4.355556e-03

Joint ci ratio: 1.755753e-01	ci left: 4.524426e-03	ci right 5.404664e-03	k: 495	n:100000
Cons ci ratio: 7.001921e-02	ci left: 2.932488e-02	ci right 3.146247e-02	k: 3038	n:100000
KS ci ratio: 9.221378e-02	ci left: 1.693085e-02	ci right 1.857729e-02	k: 1774	n:100000
NUFIP1   100000 perm   22 sec   (4632 perm/sec)   p_kst 1.774000e-02   p_cons 3.038000e-02   p_joint 4.950000e-03

Joint ci ratio: 1.643447e-01	ci left: 4.722472e-03	ci right 5.576666e-03	k: 565	n:110000
Cons ci ratio: 6.663645e-02	ci left: 2.948271e-02	ci right 3.152396e-02	k: 3354	n:110000
KS ci ratio: 8.756922e-02	ci left: 1.710686e-02	ci right 1.868234e-02	k: 1967	n:110000
NUFIP1   110000 perm   24 sec   (4549 perm/sec)   p_kst 1.788182e-02   p_cons 3.049091e-02   p_joint 5.136364e-03

Joint ci ratio: 1.583116e-01	ci left: 4.680791e-03	ci right 5.493410e-03	k: 609	n:120000
Cons ci ratio: 6.409824e-02	ci left: 2.925532e-02	ci right 3.120080e-02	k: 3626	n:120000
KS ci ratio: 8.409899e-02	ci left: 1.703491e-02	ci right 1.853853e-02	k: 2133	n:120000
NUFIP1   120000 perm   27 sec   (4474 perm/sec)   p_kst 1.777500e-02   p_cons 3.021667e-02   p_joint 5.075000e-03

Joint ci ratio: 1.596630e-01	ci left: 4.246791e-03	ci right 4.990956e-03	k: 599	n:130000
Cons ci ratio: 6.187856e-02	ci left: 2.901873e-02	ci right 3.087924e-02	k: 3892	n:130000
KS ci ratio: 8.061943e-02	ci left: 1.714094e-02	ci right 1.858837e-02	k: 2321	n:130000
NUFIP1   130000 perm   30 sec   (4398 perm/sec)   p_kst 1.785385e-02   p_cons 2.993846e-02   p_joint 4.607692e-03

Joint ci ratio: 1.532787e-01	ci left: 4.293482e-03	ci right 5.012985e-03	k: 650	n:140000
Cons ci ratio: 5.974872e-02	ci left: 2.893661e-02	ci right 3.072579e-02	k: 4175	n:140000
KS ci ratio: 7.795094e-02	ci left: 1.705076e-02	ci right 1.844075e-02	k: 2483	n:140000
NUFIP1   140000 perm   32 sec   (4324 perm/sec)   p_kst 1.773571e-02   p_cons 2.982143e-02   p_joint 4.642857e-03

Joint ci ratio: 1.477095e-01	ci left: 4.328039e-03	ci right 5.024653e-03	k: 700	n:150000
Cons ci ratio: 5.781129e-02	ci left: 2.887955e-02	ci right 3.060536e-02	k: 4460	n:150000
KS ci ratio: 7.521330e-02	ci left: 1.711724e-02	ci right 1.846150e-02	k: 2667	n:150000
NUFIP1   150000 perm   35 sec   (4254 perm/sec)   p_kst 1.778000e-02   p_cons 2.973333e-02   p_joint 4.666667e-03

Joint ci ratio: 1.454562e-01	ci left: 4.189972e-03	ci right 4.853180e-03	k: 722	n:160000
Cons ci ratio: 5.587518e-02	ci left: 2.900924e-02	ci right 3.068286e-02	k: 4774	n:160000
KS ci ratio: 7.277120e-02	ci left: 1.716388e-02	ci right 1.846618e-02	k: 2849	n:160000
NUFIP1   160000 perm   38 sec   (4182 perm/sec)   p_kst 1.780625e-02   p_cons 2.983750e-02   p_joint 4.512500e-03

Joint ci ratio: 1.308324e-01	ci left: 4.909146e-03	ci right 5.602008e-03	k: 892	n:170000
Cons ci ratio: 5.413236e-02	ci left: 2.911290e-02	ci right 3.073847e-02	k: 5086	n:170000
KS ci ratio: 7.043433e-02	ci left: 1.726346e-02	ci right 1.852953e-02	k: 3041	n:170000
NUFIP1   170000 perm   41 sec   (4119 perm/sec)   p_kst 1.788824e-02   p_cons 2.991765e-02   p_joint 5.247059e-03

Joint ci ratio: 1.274535e-01	ci left: 4.894465e-03	ci right 5.566066e-03	k: 940	n:180000
Cons ci ratio: 5.280071e-02	ci left: 2.892606e-02	ci right 3.050025e-02	k: 5347	n:180000
KS ci ratio: 6.853595e-02	ci left: 1.723786e-02	ci right 1.846663e-02	k: 3212	n:180000
NUFIP1   180000 perm   44 sec   (4058 perm/sec)   p_kst 1.784444e-02   p_cons 2.970556e-02   p_joint 5.222222e-03

Joint ci ratio: 1.120531e-01	ci left: 6.041235e-03	ci right 6.763423e-03	k: 1215	n:190000
Cons ci ratio: 5.144935e-02	ci left: 2.888407e-02	ci right 3.041454e-02	k: 5632	n:190000
KS ci ratio: 6.646399e-02	ci left: 1.738103e-02	ci right 1.858111e-02	k: 3415	n:190000
NUFIP1   190000 perm   48 sec   (4000 perm/sec)   p_kst 1.797368e-02   p_cons 2.964211e-02   p_joint 6.394737e-03

Joint ci ratio: 1.093019e-01	ci left: 6.040591e-03	ci right 6.743830e-03	k: 1277	n:200000
Cons ci ratio: 5.003575e-02	ci left: 2.902949e-02	ci right 3.052418e-02	k: 5954	n:200000
KS ci ratio: 6.476083e-02	ci left: 1.740706e-02	ci right 1.857697e-02	k: 3597	n:200000
NUFIP1   200000 perm   51 sec   (3942 perm/sec)   p_kst 1.798500e-02   p_cons 2.977000e-02   p_joint 6.385000e-03

Joint ci ratio: 1.063848e-01	ci left: 6.081927e-03	ci right 6.769899e-03	k: 1348	n:210000
Cons ci ratio: 4.876863e-02	ci left: 2.911923e-02	ci right 3.057950e-02	k: 6267	n:210000
KS ci ratio: 6.314821e-02	ci left: 1.744971e-02	ci right 1.859222e-02	k: 3783	n:210000
NUFIP1   210000 perm   54 sec   (3885 perm/sec)   p_kst 1.801429e-02   p_cons 2.984286e-02   p_joint 6.419048e-03

Joint ci ratio: 1.179502e-01	ci left: 4.700704e-03	ci right 5.294271e-03	k: 1098	n:220000
Cons ci ratio: 4.761552e-02	ci left: 2.917428e-02	ci right 3.060178e-02	k: 6574	n:220000
KS ci ratio: 6.165035e-02	ci left: 1.748882e-02	ci right 1.860575e-02	k: 3969	n:220000
NUFIP1   220000 perm   57 sec   (3831 perm/sec)   p_kst 1.804091e-02   p_cons 2.988182e-02   p_joint 4.990909e-03

Joint ci ratio: 1.154563e-01	ci left: 4.698929e-03	ci right 5.278871e-03	k: 1146	n:230000
Cons ci ratio: 4.667703e-02	ci left: 2.905727e-02	ci right 3.045026e-02	k: 6842	n:230000
KS ci ratio: 6.038014e-02	ci left: 1.745199e-02	ci right 1.854281e-02	k: 4138	n:230000
NUFIP1   230000 perm   61 sec   (3762 perm/sec)   p_kst 1.799130e-02   p_cons 2.974783e-02   p_joint 4.982609e-03

Joint ci ratio: 1.126886e-01	ci left: 4.733869e-03	ci right 5.303186e-03	k: 1203	n:240000
Cons ci ratio: 4.560062e-02	ci left: 2.918926e-02	ci right 3.055546e-02	k: 7168	n:240000
KS ci ratio: 5.903204e-02	ci left: 1.750879e-02	ci right 1.857789e-02	k: 4329	n:240000
NUFIP1   240000 perm   65 sec   (3698 perm/sec)   p_kst 1.803750e-02   p_cons 2.986667e-02   p_joint 5.012500e-03

Joint ci ratio: 1.109091e-01	ci left: 4.696147e-03	ci right 5.251425e-03	k: 1242	n:250000
Cons ci ratio: 4.476808e-02	ci left: 2.908945e-02	ci right 3.042548e-02	k: 7438	n:250000
KS ci ratio: 5.782902e-02	ci left: 1.752581e-02	ci right 1.857341e-02	k: 4511	n:250000
NUFIP1   250000 perm   69 sec   (3645 perm/sec)   p_kst 1.804400e-02   p_cons 2.975200e-02   p_joint 4.968000e-03

Joint ci ratio: 1.088705e-01	ci left: 4.691326e-03	ci right 5.235184e-03	k: 1289	n:260000
Cons ci ratio: 4.387990e-02	ci left: 2.912691e-02	ci right 3.043745e-02	k: 7742	n:260000
KS ci ratio: 5.665980e-02	ci left: 1.756448e-02	ci right 1.859246e-02	k: 4699	n:260000
NUFIP1   260000 perm   72 sec   (3592 perm/sec)   p_kst 1.807308e-02   p_cons 2.977692e-02   p_joint 4.957692e-03

Joint ci ratio: 1.073445e-01	ci left: 4.650899e-03	ci right 5.182036e-03	k: 1326	n:270000
Cons ci ratio: 4.303705e-02	ci left: 2.916916e-02	ci right 3.045577e-02	k: 8048	n:270000
KS ci ratio: 5.565159e-02	ci left: 1.754202e-02	ci right 1.854984e-02	k: 4871	n:270000
NUFIP1   270000 perm   76 sec   (3537 perm/sec)   p_kst 1.804074e-02   p_cons 2.980741e-02   p_joint 4.911111e-03

Joint ci ratio: 1.056089e-01	ci left: 4.637752e-03	ci right 5.158292e-03	k: 1370	n:280000
Cons ci ratio: 4.224098e-02	ci left: 2.920863e-02	ci right 3.047256e-02	k: 8354	n:280000
KS ci ratio: 5.477280e-02	ci left: 1.747200e-02	ci right 1.845944e-02	k: 5029	n:280000
NUFIP1   280000 perm   81 sec   (3476 perm/sec)   p_kst 1.796071e-02   p_cons 2.983571e-02   p_joint 4.892857e-03

Joint ci ratio: 1.039180e-01	ci left: 4.628935e-03	ci right 5.139658e-03	k: 1415	n:290000
Cons ci ratio: 4.152211e-02	ci left: 2.919778e-02	ci right 3.043923e-02	k: 8646	n:290000
KS ci ratio: 5.378676e-02	ci left: 1.750220e-02	ci right 1.847298e-02	k: 5215	n:290000
NUFIP1   290000 perm   85 sec   (3428 perm/sec)   p_kst 1.798276e-02   p_cons 2.981379e-02   p_joint 4.879310e-03

Joint ci ratio: 1.022004e-01	ci left: 4.630513e-03	ci right 5.132459e-03	k: 1463	n:300000
Cons ci ratio: 4.086466e-02	ci left: 2.915152e-02	ci right 3.037092e-02	k: 8927	n:300000
KS ci ratio: 5.289201e-02	ci left: 1.750421e-02	ci right 1.845846e-02	k: 5393	n:300000
NUFIP1   300000 perm   89 sec   (3381 perm/sec)   p_kst 1.797667e-02   p_cons 2.975667e-02   p_joint 4.876667e-03

Joint ci ratio: 1.005318e-01	ci left: 4.635199e-03	ci right 5.128965e-03	k: 1512	n:310000
Cons ci ratio: 4.014099e-02	ci left: 2.924575e-02	ci right 3.044693e-02	k: 9251	n:310000
KS ci ratio: 5.210241e-02	ci left: 1.746482e-02	ci right 1.840229e-02	k: 5558	n:310000
NUFIP1   310000 perm   93 sec   (3336 perm/sec)   p_kst 1.792903e-02   p_cons 2.984194e-02   p_joint 4.877419e-03

Joint ci ratio: 9.881531e-02	ci left: 4.651847e-03	ci right 5.138435e-03	k: 1565	n:320000
Cons ci ratio: 3.949699e-02	ci left: 2.927237e-02	ci right 3.045491e-02	k: 9555	n:320000
KS ci ratio: 5.123787e-02	ci left: 1.750205e-02	ci right 1.842546e-02	k: 5747	n:320000
NUFIP1   320000 perm   97 sec   (3292 perm/sec)   p_kst 1.795937e-02   p_cons 2.985938e-02   p_joint 4.890625e-03

Outputting figure to mutsig2_images.part000000000118/NUFIP1.2_1528_320000_0.017959_0.029859_0.0048906.png
                gene_name: NUFIP1
               theta_stop: 0.099 
                    nperm: 320000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.0049 
     ci_joint_bounds_left: 0.0047 
    ci_joint_bounds_right: 0.0051 

Current progress: 84 percent done.
NUMB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.637447e-02	ci left: 2.004751e-01	ci right 2.164950e-01	k: 2084	n:10000
Cons ci ratio: 1.072707e-01	ci left: 1.114460e-01	ci right 1.241776e-01	k: 1177	n:10000
KS ci ratio: 5.509389e-02	ci left: 3.267412e-01	ci right 3.453544e-01	k: 3360	n:10000
NUMB   10000 perm   2 sec   (6186 perm/sec)   p_kst 3.360000e-01   p_cons 1.177000e-01   p_joint 2.084000e-01

Joint ci ratio: 5.058784e-02	ci left: 2.250246e-01	ci right 2.367538e-01	k: 4617	n:20000
Cons ci ratio: 7.559884e-02	ci left: 1.140023e-01	ci right 1.230090e-01	k: 2369	n:20000
KS ci ratio: 3.925592e-02	ci left: 3.261199e-01	ci right 3.392288e-01	k: 6653	n:20000
NUMB   20000 perm   4 sec   (5566 perm/sec)   p_kst 3.326500e-01   p_cons 1.184500e-01   p_joint 2.308500e-01

Outputting figure to mutsig2_images.part000000000118/NUMB.2_1996_20000_0.33265_0.11845_0.23085.png
                gene_name: NUMB
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 86 percent done.
NUP155
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.551763e-02	ci left: 5.392844e-01	ci right 5.588870e-01	k: 5491	n:10000
Cons ci ratio: 4.733738e-02	ci left: 3.970506e-01	ci right 4.164037e-01	k: 4067	n:10000
KS ci ratio: 4.364630e-02	ci left: 4.366235e-01	ci right 4.562078e-01	k: 4464	n:10000
NUP155   10000 perm   2 sec   (5253 perm/sec)   p_kst 4.464000e-01   p_cons 4.067000e-01   p_joint 5.491000e-01

Outputting figure to mutsig2_images.part000000000118/NUP155.2_4316_10000_0.4464_0.4067_0.5491.png
                gene_name: NUP155
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 88 percent done.
NUP35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.723572e-02	ci left: 6.651158e-01	ci right 6.835825e-01	k: 6744	n:10000
Cons ci ratio: 5.473782e-02	ci left: 3.296208e-01	ci right 3.482731e-01	k: 3389	n:10000
KS ci ratio: 1.809928e-02	ci left: 8.166970e-01	ci right 8.317137e-01	k: 8243	n:10000
NUP35   10000 perm   1 sec   (6803 perm/sec)   p_kst 8.243000e-01   p_cons 3.389000e-01   p_joint 6.744000e-01

Outputting figure to mutsig2_images.part000000000118/NUP35.2_1017_10000_0.8243_0.3389_0.6744.png
                gene_name: NUP35
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 89 percent done.
NUP37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.695986e-02	ci left: 3.121506e-01	ci right 3.305536e-01	k: 3213	n:10000
Cons ci ratio: 3.030300e-02	ci left: 6.163304e-01	ci right 6.353963e-01	k: 6259	n:10000
KS ci ratio: 6.301540e-02	ci left: 2.701258e-01	ci right 2.878031e-01	k: 2789	n:10000
NUP37   10000 perm   1 sec   (7006 perm/sec)   p_kst 2.789000e-01   p_cons 6.259000e-01   p_joint 3.213000e-01

Outputting figure to mutsig2_images.part000000000118/NUP37.2_1017_10000_0.2789_0.6259_0.3213.png
                gene_name: NUP37
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 91 percent done.
NUP43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.264161e-02	ci left: 2.725021e-01	ci right 2.902255e-01	k: 2813	n:10000
Cons ci ratio: 4.980742e-02	ci left: 3.728605e-01	ci right 3.920080e-01	k: 3824	n:10000
KS ci ratio: 5.150451e-02	ci left: 3.572448e-01	ci right 3.762329e-01	k: 3667	n:10000
NUP43   10000 perm   2 sec   (6636 perm/sec)   p_kst 3.667000e-01   p_cons 3.824000e-01   p_joint 2.813000e-01

Outputting figure to mutsig2_images.part000000000118/NUP43.2_1175_10000_0.3667_0.3824_0.2813.png
                gene_name: NUP43
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 93 percent done.
NUPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.962295e-02	ci left: 2.927127e-01	ci right 3.108030e-01	k: 3017	n:10000
Cons ci ratio: 1.700177e-02	ci left: 8.343964e-01	ci right 8.488040e-01	k: 8417	n:10000
KS ci ratio: 1.858267e-01	ci left: 3.863000e-02	ci right 4.663920e-02	k: 425	n:10000
NUPL1   10000 perm   2 sec   (6331 perm/sec)   p_kst 4.250000e-02   p_cons 8.417000e-01   p_joint 3.017000e-01

Joint ci ratio: 4.242653e-02	ci left: 2.927590e-01	ci right 3.054994e-01	k: 5982	n:20000
Cons ci ratio: 1.210700e-02	ci left: 8.346423e-01	ci right 8.448587e-01	k: 16796	n:20000
KS ci ratio: 1.310813e-01	ci left: 3.998807e-02	ci right 4.564582e-02	k: 855	n:20000
NUPL1   20000 perm   4 sec   (5623 perm/sec)   p_kst 4.275000e-02   p_cons 8.398000e-01   p_joint 2.991000e-01

Joint ci ratio: 2.850610e-02	ci left: 3.810840e-01	ci right 3.921379e-01	k: 11598	n:30000
Cons ci ratio: 9.454298e-03	ci left: 8.473580e-01	ci right 8.554404e-01	k: 25543	n:30000
KS ci ratio: 1.064235e-01	ci left: 4.095956e-02	ci right 4.559608e-02	k: 1297	n:30000
NUPL1   30000 perm   6 sec   (5333 perm/sec)   p_kst 4.323333e-02   p_cons 8.514333e-01   p_joint 3.866000e-01

Joint ci ratio: 3.379934e-02	ci left: 2.473780e-01	ci right 2.559080e-01	k: 10065	n:40000
Cons ci ratio: 8.186227e-03	ci left: 8.479520e-01	ci right 8.549469e-01	k: 34059	n:40000
KS ci ratio: 9.378214e-02	ci left: 3.988401e-02	ci right 4.383285e-02	k: 1673	n:40000
NUPL1   40000 perm   8 sec   (5104 perm/sec)   p_kst 4.182500e-02   p_cons 8.514750e-01   p_joint 2.516250e-01

Outputting figure to mutsig2_images.part000000000118/NUPL1.2_1864_40000_0.041825_0.85147_0.25162.png
                gene_name: NUPL1
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 95 percent done.
NUS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.085693e-02	ci left: 1.825490e-01	ci right 1.980318e-01	k: 1902	n:10000
Cons ci ratio: 6.035235e-02	ci left: 2.876580e-01	ci right 3.056606e-01	k: 2966	n:10000
KS ci ratio: 1.651998e-01	ci left: 4.888186e-02	ci right 5.778061e-02	k: 532	n:10000
NUS1   10000 perm   2 sec   (6302 perm/sec)   p_kst 5.320000e-02   p_cons 2.966000e-01   p_joint 1.902000e-01

Joint ci ratio: 8.635687e-02	ci left: 8.935242e-02	ci right 9.746624e-02	k: 1867	n:20000
Cons ci ratio: 4.292242e-02	ci left: 2.879396e-01	ci right 3.006202e-01	k: 5885	n:20000
KS ci ratio: 1.207563e-01	ci left: 4.702009e-02	ci right 5.311157e-02	k: 1000	n:20000
NUS1   20000 perm   3 sec   (5822 perm/sec)   p_kst 5.000000e-02   p_cons 2.942500e-01   p_joint 9.335000e-02

Joint ci ratio: 1.006431e-01	ci left: 4.570585e-02	ci right 5.058213e-02	k: 1443	n:30000
Cons ci ratio: 3.489479e-02	ci left: 2.909040e-01	ci right 3.012688e-01	k: 8882	n:30000
KS ci ratio: 9.810019e-02	ci left: 4.804908e-02	ci right 5.303842e-02	k: 1515	n:30000
NUS1   30000 perm   5 sec   (5603 perm/sec)   p_kst 5.050000e-02   p_cons 2.960667e-01   p_joint 4.810000e-02

Joint ci ratio: 4.480892e-02	ci left: 1.569893e-01	ci right 1.642100e-01	k: 6423	n:40000
Cons ci ratio: 3.021436e-02	ci left: 2.916782e-01	ci right 3.006514e-01	k: 11846	n:40000
KS ci ratio: 8.411361e-02	ci left: 4.932971e-02	ci right 5.368569e-02	k: 2059	n:40000
NUS1   40000 perm   7 sec   (5436 perm/sec)   p_kst 5.147500e-02   p_cons 2.961500e-01   p_joint 1.605750e-01

Outputting figure to mutsig2_images.part000000000118/NUS1.2_902_40000_0.051475_0.29615_0.16057.png
                gene_name: NUS1
               theta_stop: 0.084 
                    nperm: 40000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.16 

Current progress: 96 percent done.
NXF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.418225e-02	ci left: 5.582226e-01	ci right 5.777378e-01	k: 5680	n:10000
Cons ci ratio: 2.777056e-02	ci left: 6.564574e-01	ci right 6.750460e-01	k: 6658	n:10000
KS ci ratio: 6.563685e-02	ci left: 2.541932e-01	ci right 2.715451e-01	k: 2628	n:10000
NXF3   10000 perm   2 sec   (6424 perm/sec)   p_kst 2.628000e-01   p_cons 6.658000e-01   p_joint 5.680000e-01

Outputting figure to mutsig2_images.part000000000118/NXF3.2_1672_10000_0.2628_0.6658_0.568.png
                gene_name: NXF3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 98 percent done.
NXN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.061433e-02	ci left: 6.115078e-01	ci right 6.306216e-01	k: 6211	n:10000
KS ci ratio: 3.409181e-02	ci left: 5.595257e-01	ci right 5.790339e-01	k: 5693	n:10000
NXN   10000 perm   2 sec   (6561 perm/sec)   p_kst 5.693000e-01   p_cons 6.211000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000118/NXN.2_1340_10000_0.5693_0.6211_1.png
                gene_name: NXN
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000118
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 118 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1711>
Subject: Job 9894047: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1711>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000119> was used as the working directory.
Started at Sat Oct  6 00:21:55 2012
Results reported at Sat Oct  6 00:37:37 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000119.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000119.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 119  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000119.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    965.63 sec.
    Max Memory :      3491 MB
    Max Swap   :      5954 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
119
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 119
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 119: processing genes 10639 - 10728
Calculating significance of each gene.
Using projection method.
10639	NXPH1	4.245523e-01
10640	NXPH2	3.083499e-01
10641	NXPH3	2.687839e-01
10642	NXPH4	1
10643	NXT1	2.776164e-01
10644	NXT2	3.643999e-01
10645	NYNRIN	9.863981e-01
10646	NYX	5.645042e-01
10647	OAF	1
10648	OAS1	5.974099e-01
10649	OAS2	4.094949e-01
10650	OAS3	6.340915e-01
10651	OASL	6.576231e-01
10652	OAT	8.786089e-01
10653	OAZ1	1
10654	OAZ2	5.405682e-01
10655	OAZ3	3.174999e-01
10656	OBFC1	4.227904e-01
10657	OBFC2A	4.406539e-01
10658	OBFC2B	1
10659	OBP2A	3.773504e-01
10660	OBP2B	3.544773e-01
10661	OBSCN	9.998115e-01
10662	OBSL1	9.234573e-01
10663	OC90	7.893095e-01
10664	OCA2	4.976461e-01
10665	OCEL1	1
10666	OCIAD1	4.262262e-01
10667	OCIAD2	1
10668	OCLM	1
10669	OCLN	9.572777e-01
10670	OCM	9.716594e-02
10671	OCM2	1
10672	OCRL	7.899202e-02
10673	ODAM	5.545625e-01
10674	ODC1	1.738501e-01
10675	ODF1	3.412628e-02
10676	ODF2	3.041859e-01
10677	ODF2L	5.910553e-02
10678	ODF3	1.875475e-01
10679	ODF3B	1
10680	ODF3L1	1
10681	ODF3L2	5.542460e-01
10682	ODF4	2.336501e-01
In gene ODZ1 the following bins exceed PROBCAP:
    COAD-AA-3560	categ 6	N = 8302    n = 1	mu =   2.76e-07
10683	ODZ1	2.761560e-05
10684	ODZ2	3.260913e-01
10685	ODZ3	9.329535e-02
10686	ODZ4	5.994281e-01
10687	OFD1	7.812072e-01
10688	OGDH	7.360121e-01
10689	OGDHL	1.455098e-02
10690	OGFOD1	8.460476e-01
10691	OGFOD2	1
10692	OGFR	1
10693	OGFRL1	1.244837e-02
10694	OGG1	9.490674e-01
10695	OGN	2.121030e-01
10696	OGT	4.450653e-01
10697	OIP5	1
10698	OIT3	3.608745e-01
10699	OLA1	3.296485e-01
10700	OLAH	4.507192e-01
10701	OLFM1	2.675876e-02
10702	OLFM2	6.785514e-01
10703	OLFM3	2.496280e-03
10704	OLFM4	1.988742e-01
10705	OLFML1	1.901256e-03
10706	OLFML2A	6.399241e-01
10707	OLFML2B	2.955959e-01
10708	OLFML3	7.555506e-01
10709	OLIG2	1
10710	OLIG3	3.171137e-01
10711	OLR1	2.969321e-01
10712	OMA1	2.256923e-01
10713	OMD	2.233520e-01
10714	OMG	5.492046e-01
10715	OMP	1.994189e-01
10716	ONECUT1	8.528463e-01
10717	ONECUT2	1
10718	OOEP	5.166570e-01
10719	OPA1	7.429098e-01
10720	OPA3	5.343438e-01
10721	OPALIN	6.009047e-01
10722	OPCML	8.897696e-06
In gene OPHN1 the following bins exceed PROBCAP:
    COAD-A6-2678	categ 6	N = 2501    n = 1	mu =   2.07e-07
10723	OPHN1	1.004601e-01
10724	OPLAH	1
10725	OPN1LW	8.403020e-01
10726	OPN1MW	1
10727	OPN1MW2	1
10728	OPN1SW	2.055192e-01
Done

Running MutSig 2:
Scatter job 119: processing genes 10639 - 10728
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ODZ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.061000e-01	ci left: 1.136922e-01	ci right 1.265300e-01	k: 1200	n:10000
Cons ci ratio: 3.124198e-02	ci left: 6.018656e-01	ci right 6.210694e-01	k: 6115	n:10000
KS ci ratio: 1.261899e-01	ci left: 8.242097e-02	ci right 9.362038e-02	k: 879	n:10000
ODZ3   10000 perm   3 sec   (2915 perm/sec)   p_kst 8.790000e-02   p_cons 6.115000e-01   p_joint 1.200000e-01

Joint ci ratio: 7.200805e-02	ci left: 1.243836e-01	ci right 1.337245e-01	k: 2580	n:20000
Cons ci ratio: 2.192553e-02	ci left: 6.083152e-01	ci right 6.218513e-01	k: 12302	n:20000
KS ci ratio: 8.878972e-02	ci left: 8.484372e-02	ci right 9.277630e-02	k: 1775	n:20000
ODZ3   20000 perm   9 sec   (2154 perm/sec)   p_kst 8.875000e-02   p_cons 6.151000e-01   p_joint 1.290000e-01

Outputting figure to mutsig2_images.part000000000119/ODZ3.29_8208_20000_0.08875_0.6151_0.129.png
                gene_name: ODZ3
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 2 percent done.
ODZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.367563e-03	ci left: 9.523170e-01	ci right 9.604144e-01	k: 9565	n:10000
Cons ci ratio: 1.601493e-02	ci left: 8.499848e-01	ci right 8.638066e-01	k: 8570	n:10000
KS ci ratio: 1.592994e-02	ci left: 8.513105e-01	ci right 8.650802e-01	k: 8583	n:10000
ODZ1   10000 perm   3 sec   (3327 perm/sec)   p_kst 8.583000e-01   p_cons 8.570000e-01   p_joint 9.565000e-01

Outputting figure to mutsig2_images.part000000000119/ODZ1.26_8327_10000_0.8583_0.857_0.9565.png
                gene_name: ODZ1
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 4 percent done.
OBSCN
Processing conservation and coverage...
39% 78% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
Cons ci ratio: 1.350161e-02	ci left: 8.878013e-01	ci right 8.999681e-01	k: 8940	n:10000
KS ci ratio: 7.677370e-01	ci left: 1.618501e-03	ci right 3.688296e-03	k: 25	n:10000
OBSCN   10000 perm   5 sec   (1993 perm/sec)   p_kst 2.500000e-03   p_cons 8.940000e-01   p_joint 1.070000e-02

Joint ci ratio: 2.007894e-01	ci left: 1.682030e-02	ci right 2.062146e-02	k: 373	n:20000
Cons ci ratio: 1.006407e-02	ci left: 8.790237e-01	ci right 8.879645e-01	k: 17671	n:20000
KS ci ratio: 5.536645e-01	ci left: 1.813056e-03	ci right 3.237752e-03	k: 49	n:20000
OBSCN   20000 perm   11 sec   (1874 perm/sec)   p_kst 2.450000e-03   p_cons 8.835500e-01   p_joint 1.865000e-02

Joint ci ratio: 2.259452e-01	ci left: 8.810667e-03	ci right 1.108575e-02	k: 297	n:30000
Cons ci ratio: 8.214977e-03	ci left: 8.799171e-01	ci right 8.872084e-01	k: 26508	n:30000
KS ci ratio: 4.679749e-01	ci left: 1.789965e-03	ci right 2.909908e-03	k: 69	n:30000
OBSCN   30000 perm   16 sec   (1830 perm/sec)   p_kst 2.300000e-03   p_cons 8.836000e-01   p_joint 9.900000e-03

Joint ci ratio: 2.214143e-01	ci left: 6.914018e-03	ci right 8.658579e-03	k: 310	n:40000
Cons ci ratio: 7.202993e-03	ci left: 8.778120e-01	ci right 8.841825e-01	k: 35241	n:40000
KS ci ratio: 3.934821e-01	ci left: 1.989462e-03	ci right 2.984965e-03	k: 98	n:40000
OBSCN   40000 perm   22 sec   (1806 perm/sec)   p_kst 2.450000e-03   p_cons 8.810250e-01   p_joint 7.750000e-03

Joint ci ratio: 2.097031e-01	ci left: 6.212122e-03	ci right 7.685996e-03	k: 346	n:50000
Cons ci ratio: 6.431571e-03	ci left: 8.785137e-01	ci right 8.842020e-01	k: 44069	n:50000
KS ci ratio: 3.589144e-01	ci left: 1.953812e-03	ci right 2.825571e-03	k: 118	n:50000
OBSCN   50000 perm   28 sec   (1791 perm/sec)   p_kst 2.360000e-03   p_cons 8.813800e-01   p_joint 6.920000e-03

Joint ci ratio: 2.199340e-01	ci left: 4.687462e-03	ci right 5.861174e-03	k: 315	n:60000
Cons ci ratio: 5.982808e-03	ci left: 8.747323e-01	ci right 8.799978e-01	k: 52643	n:60000
KS ci ratio: 3.357533e-01	ci left: 1.886806e-03	ci right 2.662597e-03	k: 135	n:60000
OBSCN   60000 perm   34 sec   (1774 perm/sec)   p_kst 2.250000e-03   p_cons 8.773833e-01   p_joint 5.250000e-03

Joint ci ratio: 1.675684e-01	ci left: 7.106860e-03	ci right 8.420151e-03	k: 542	n:70000
Cons ci ratio: 5.526774e-03	ci left: 8.754086e-01	ci right 8.802743e-01	k: 61450	n:70000
KS ci ratio: 3.011721e-01	ci left: 2.051143e-03	ci right 2.791068e-03	k: 168	n:70000
OBSCN   70000 perm   40 sec   (1749 perm/sec)   p_kst 2.400000e-03   p_cons 8.778571e-01   p_joint 7.742857e-03

Joint ci ratio: 1.581089e-01	ci left: 7.021868e-03	ci right 8.239247e-03	k: 609	n:80000
Cons ci ratio: 5.183527e-03	ci left: 8.749939e-01	ci right 8.795537e-01	k: 70183	n:80000
KS ci ratio: 2.727658e-01	ci left: 2.224068e-03	ci right 2.937768e-03	k: 205	n:80000
OBSCN   80000 perm   46 sec   (1728 perm/sec)   p_kst 2.562500e-03   p_cons 8.772875e-01   p_joint 7.612500e-03

Joint ci ratio: 1.563798e-01	ci left: 6.390929e-03	ci right 7.485658e-03	k: 623	n:90000
Cons ci ratio: 4.877191e-03	ci left: 8.755642e-01	ci right 8.798559e-01	k: 78995	n:90000
KS ci ratio: 2.592779e-01	ci left: 2.205098e-03	ci right 2.872055e-03	k: 227	n:90000
OBSCN   90000 perm   52 sec   (1715 perm/sec)   p_kst 2.522222e-03   p_cons 8.777222e-01   p_joint 6.922222e-03

Joint ci ratio: 1.590193e-01	ci left: 5.559536e-03	ci right 6.529451e-03	k: 603	n:100000
Cons ci ratio: 4.618537e-03	ci left: 8.760663e-01	ci right 8.801317e-01	k: 87811	n:100000
KS ci ratio: 2.496212e-01	ci left: 2.153105e-03	ci right 2.776314e-03	k: 245	n:100000
OBSCN   100000 perm   59 sec   (1704 perm/sec)   p_kst 2.450000e-03   p_cons 8.781100e-01   p_joint 6.030000e-03

Joint ci ratio: 1.378273e-01	ci left: 6.796637e-03	ci right 7.811419e-03	k: 802	n:110000
Cons ci ratio: 4.395756e-03	ci left: 8.765456e-01	ci right 8.804162e-01	k: 96634	n:110000
KS ci ratio: 2.391592e-01	ci left: 2.145124e-03	ci right 2.736144e-03	k: 267	n:110000
OBSCN   110000 perm   65 sec   (1690 perm/sec)   p_kst 2.427273e-03   p_cons 8.784909e-01   p_joint 7.290909e-03

Joint ci ratio: 1.324173e-01	ci left: 6.769707e-03	ci right 7.737669e-03	k: 869	n:120000
Cons ci ratio: 4.215983e-03	ci left: 8.762524e-01	ci right 8.799627e-01	k: 105374	n:120000
KS ci ratio: 2.287281e-01	ci left: 2.162493e-03	ci right 2.728647e-03	k: 292	n:120000
OBSCN   120000 perm   72 sec   (1671 perm/sec)   p_kst 2.433333e-03   p_cons 8.781167e-01   p_joint 7.241667e-03

Joint ci ratio: 1.292050e-01	ci left: 6.576303e-03	ci right 7.492048e-03	k: 913	n:130000
Cons ci ratio: 4.053369e-03	ci left: 8.761776e-01	ci right 8.797439e-01	k: 114136	n:130000
KS ci ratio: 2.205984e-01	ci left: 2.155856e-03	ci right 2.697489e-03	k: 314	n:130000
OBSCN   130000 perm   78 sec   (1663 perm/sec)   p_kst 2.415385e-03   p_cons 8.779692e-01   p_joint 7.023077e-03

Joint ci ratio: 1.303184e-01	ci left: 6.002785e-03	ci right 6.846424e-03	k: 898	n:140000
Cons ci ratio: 3.907703e-03	ci left: 8.761449e-01	ci right 8.795823e-01	k: 122902	n:140000
KS ci ratio: 2.120205e-01	ci left: 2.177525e-03	ci right 2.700566e-03	k: 340	n:140000
OBSCN   140000 perm   85 sec   (1654 perm/sec)   p_kst 2.428571e-03   p_cons 8.778714e-01   p_joint 6.414286e-03

Joint ci ratio: 1.271826e-01	ci left: 5.892916e-03	ci right 6.699680e-03	k: 943	n:150000
Cons ci ratio: 3.773167e-03	ci left: 8.763197e-01	ci right 8.796390e-01	k: 131698	n:150000
KS ci ratio: 2.054969e-01	ci left: 2.171357e-03	ci right 2.674851e-03	k: 362	n:150000
OBSCN   150000 perm   91 sec   (1645 perm/sec)   p_kst 2.413333e-03   p_cons 8.779867e-01   p_joint 6.286667e-03

Joint ci ratio: 1.097344e-01	ci left: 7.478100e-03	ci right 8.352372e-03	k: 1265	n:160000
Cons ci ratio: 3.653549e-03	ci left: 8.763612e-01	ci right 8.795751e-01	k: 140476	n:160000
KS ci ratio: 1.957542e-01	ci left: 2.255296e-03	ci right 2.750507e-03	k: 399	n:160000
OBSCN   160000 perm   98 sec   (1636 perm/sec)   p_kst 2.493750e-03   p_cons 8.779750e-01   p_joint 7.906250e-03

Joint ci ratio: 1.120570e-01	ci left: 6.746389e-03	ci right 7.552909e-03	k: 1214	n:170000
Cons ci ratio: 3.542879e-03	ci left: 8.765058e-01	ci right 8.796225e-01	k: 149272	n:170000
KS ci ratio: 1.901339e-01	ci left: 2.256989e-03	ci right 2.736699e-03	k: 423	n:170000
OBSCN   170000 perm   104 sec   (1627 perm/sec)   p_kst 2.488235e-03   p_cons 8.780706e-01   p_joint 7.141176e-03

Joint ci ratio: 1.092628e-01	ci left: 6.711896e-03	ci right 7.492995e-03	k: 1277	n:180000
Cons ci ratio: 3.441691e-03	ci left: 8.766356e-01	ci right 8.796634e-01	k: 158068	n:180000
KS ci ratio: 1.851788e-01	ci left: 2.253376e-03	ci right 2.718434e-03	k: 446	n:180000
OBSCN   180000 perm   111 sec   (1617 perm/sec)   p_kst 2.477778e-03   p_cons 8.781556e-01   p_joint 7.094444e-03

Joint ci ratio: 1.119143e-01	ci left: 6.056585e-03	ci right 6.779651e-03	k: 1218	n:190000
Cons ci ratio: 3.350763e-03	ci left: 8.766205e-01	ci right 8.795680e-01	k: 166839	n:190000
KS ci ratio: 1.823505e-01	ci left: 2.205067e-03	ci right 2.652436e-03	k: 460	n:190000
OBSCN   190000 perm   118 sec   (1608 perm/sec)   p_kst 2.421053e-03   p_cons 8.781000e-01   p_joint 6.410526e-03

Joint ci ratio: 1.123971e-01	ci left: 5.705100e-03	ci right 6.389336e-03	k: 1208	n:200000
Cons ci ratio: 3.264851e-03	ci left: 8.767285e-01	ci right 8.796005e-01	k: 175634	n:200000
KS ci ratio: 1.788943e-01	ci left: 2.180742e-03	ci right 2.613882e-03	k: 478	n:200000
OBSCN   200000 perm   125 sec   (1598 perm/sec)   p_kst 2.390000e-03   p_cons 8.781700e-01   p_joint 6.040000e-03

Joint ci ratio: 1.121803e-01	ci left: 5.456530e-03	ci right 6.109606e-03	k: 1213	n:210000
Cons ci ratio: 3.183521e-03	ci left: 8.769419e-01	ci right 8.797429e-01	k: 184453	n:210000
KS ci ratio: 1.745743e-01	ci left: 2.186128e-03	ci right 2.608747e-03	k: 502	n:210000
OBSCN   210000 perm   132 sec   (1587 perm/sec)   p_kst 2.390476e-03   p_cons 8.783476e-01   p_joint 5.776190e-03

Joint ci ratio: 9.605300e-02	ci left: 7.152579e-03	ci right 7.878669e-03	k: 1652	n:220000
Cons ci ratio: 3.107578e-03	ci left: 8.771641e-01	ci right 8.798987e-01	k: 193278	n:220000
KS ci ratio: 1.703909e-01	ci left: 2.195490e-03	ci right 2.608704e-03	k: 527	n:220000
OBSCN   220000 perm   139 sec   (1578 perm/sec)   p_kst 2.395455e-03   p_cons 8.785364e-01   p_joint 7.509091e-03

Joint ci ratio: 9.907107e-02	ci left: 6.425785e-03	ci right 7.099779e-03	k: 1554	n:230000
Cons ci ratio: 3.038673e-03	ci left: 8.772365e-01	ci right 8.799105e-01	k: 202073	n:230000
KS ci ratio: 1.664945e-01	ci left: 2.204149e-03	ci right 2.608554e-03	k: 552	n:230000
OBSCN   230000 perm   147 sec   (1569 perm/sec)   p_kst 2.400000e-03   p_cons 8.785783e-01   p_joint 6.756522e-03

Joint ci ratio: 9.801234e-02	ci left: 6.296198e-03	ci right 6.949136e-03	k: 1588	n:240000
Cons ci ratio: 2.974274e-03	ci left: 8.772951e-01	ci right 8.799124e-01	k: 210866	n:240000
KS ci ratio: 1.635644e-01	ci left: 2.192200e-03	ci right 2.586638e-03	k: 572	n:240000
OBSCN   240000 perm   154 sec   (1560 perm/sec)   p_kst 2.383333e-03   p_cons 8.786083e-01   p_joint 6.616667e-03

Joint ci ratio: 9.612592e-02	ci left: 6.290231e-03	ci right 6.929288e-03	k: 1651	n:250000
Cons ci ratio: 2.914840e-03	ci left: 8.772732e-01	ci right 8.798380e-01	k: 219640	n:250000
KS ci ratio: 1.607838e-01	ci left: 2.181264e-03	ci right 2.566418e-03	k: 592	n:250000
OBSCN   250000 perm   162 sec   (1547 perm/sec)   p_kst 2.368000e-03   p_cons 8.785600e-01   p_joint 6.604000e-03

Joint ci ratio: 9.658049e-02	ci left: 5.991953e-03	ci right 6.603746e-03	k: 1636	n:260000
Cons ci ratio: 2.854814e-03	ci left: 8.775548e-01	ci right 8.800675e-01	k: 228492	n:260000
KS ci ratio: 1.580111e-01	ci left: 2.174916e-03	ci right 2.551699e-03	k: 613	n:260000
OBSCN   260000 perm   170 sec   (1534 perm/sec)   p_kst 2.357692e-03   p_cons 8.788154e-01   p_joint 6.292308e-03

Joint ci ratio: 9.770902e-02	ci left: 5.636271e-03	ci right 6.218856e-03	k: 1599	n:270000
Cons ci ratio: 2.801503e-03	ci left: 8.775742e-01	ci right 8.800399e-01	k: 237279	n:270000
KS ci ratio: 1.548889e-01	ci left: 2.183332e-03	ci right 2.553405e-03	k: 638	n:270000
OBSCN   270000 perm   177 sec   (1525 perm/sec)   p_kst 2.362963e-03   p_cons 8.788111e-01   p_joint 5.922222e-03

Joint ci ratio: 9.942103e-02	ci left: 5.246819e-03	ci right 5.799206e-03	k: 1545	n:280000
Cons ci ratio: 2.749319e-03	ci left: 8.777289e-01	ci right 8.801489e-01	k: 246104	n:280000
KS ci ratio: 1.514881e-01	ci left: 2.204960e-03	ci right 2.569748e-03	k: 667	n:280000
OBSCN   280000 perm   185 sec   (1517 perm/sec)   p_kst 2.382143e-03   p_cons 8.789429e-01   p_joint 5.517857e-03

Joint ci ratio: 8.704469e-02	ci left: 6.642415e-03	ci right 7.250260e-03	k: 2013	n:290000
Cons ci ratio: 2.700469e-03	ci left: 8.778318e-01	ci right 8.802089e-01	k: 254917	n:290000
KS ci ratio: 1.489458e-01	ci left: 2.205256e-03	ci right 2.563425e-03	k: 690	n:290000
OBSCN   290000 perm   192 sec   (1508 perm/sec)   p_kst 2.379310e-03   p_cons 8.790241e-01   p_joint 6.941379e-03

Joint ci ratio: 8.575691e-02	ci left: 6.619938e-03	ci right 7.216314e-03	k: 2074	n:300000
Cons ci ratio: 2.655297e-03	ci left: 8.778344e-01	ci right 8.801717e-01	k: 263702	n:300000
KS ci ratio: 1.458127e-01	ci left: 2.228062e-03	ci right 2.581660e-03	k: 720	n:300000
OBSCN   300000 perm   200 sec   (1500 perm/sec)   p_kst 2.400000e-03   p_cons 8.790067e-01   p_joint 6.913333e-03

Joint ci ratio: 8.478483e-02	ci left: 6.557919e-03	ci right 7.141680e-03	k: 2122	n:310000
Cons ci ratio: 2.611487e-03	ci left: 8.779051e-01	ci right 8.802039e-01	k: 272508	n:310000
KS ci ratio: 1.438324e-01	ci left: 2.218366e-03	ci right 2.565234e-03	k: 740	n:310000
OBSCN   310000 perm   208 sec   (1493 perm/sec)   p_kst 2.387097e-03   p_cons 8.790581e-01   p_joint 6.845161e-03

Joint ci ratio: 8.392289e-02	ci left: 6.487574e-03	ci right 7.058914e-03	k: 2166	n:320000
Cons ci ratio: 2.572344e-03	ci left: 8.777584e-01	ci right 8.800223e-01	k: 281246	n:320000
KS ci ratio: 1.420242e-01	ci left: 2.206293e-03	ci right 2.546569e-03	k: 759	n:320000
OBSCN   320000 perm   216 sec   (1484 perm/sec)   p_kst 2.371875e-03   p_cons 8.788938e-01   p_joint 6.768750e-03

Joint ci ratio: 8.373730e-02	ci left: 6.320625e-03	ci right 6.875971e-03	k: 2176	n:330000
Cons ci ratio: 2.533895e-03	ci left: 8.777060e-01	ci right 8.799358e-01	k: 290012	n:330000
KS ci ratio: 1.399229e-01	ci left: 2.206675e-03	ci right 2.541554e-03	k: 782	n:330000
OBSCN   330000 perm   224 sec   (1476 perm/sec)   p_kst 2.369697e-03   p_cons 8.788242e-01   p_joint 6.593939e-03

Joint ci ratio: 8.495168e-02	ci left: 5.959050e-03	ci right 6.490595e-03	k: 2115	n:340000
Cons ci ratio: 2.498120e-03	ci left: 8.775713e-01	ci right 8.797693e-01	k: 298749	n:340000
KS ci ratio: 1.374005e-01	ci left: 2.224109e-03	ci right 2.555052e-03	k: 811	n:340000
OBSCN   340000 perm   232 sec   (1467 perm/sec)   p_kst 2.385294e-03   p_cons 8.786735e-01   p_joint 6.220588e-03

Joint ci ratio: 8.369518e-02	ci left: 5.967794e-03	ci right 6.491861e-03	k: 2179	n:350000
Cons ci ratio: 2.461670e-03	ci left: 8.776310e-01	ci right 8.797970e-01	k: 307551	n:350000
KS ci ratio: 1.352518e-01	ci left: 2.232316e-03	ci right 2.558867e-03	k: 837	n:350000
OBSCN   350000 perm   240 sec   (1455 perm/sec)   p_kst 2.391429e-03   p_cons 8.787171e-01   p_joint 6.225714e-03

Joint ci ratio: 8.286525e-02	ci left: 5.921692e-03	ci right 6.436305e-03	k: 2223	n:360000
Cons ci ratio: 2.426327e-03	ci left: 8.777267e-01	ci right 8.798617e-01	k: 316367	n:360000
KS ci ratio: 1.336668e-01	ci left: 2.223993e-03	ci right 2.545212e-03	k: 857	n:360000
OBSCN   360000 perm   249 sec   (1447 perm/sec)   p_kst 2.380556e-03   p_cons 8.787972e-01   p_joint 6.175000e-03

Joint ci ratio: 7.808742e-02	ci left: 6.500611e-03	ci right 7.031482e-03	k: 2502	n:370000
Cons ci ratio: 2.393434e-03	ci left: 8.777305e-01	ci right 8.798365e-01	k: 325151	n:370000
KS ci ratio: 1.317608e-01	ci left: 2.229210e-03	ci right 2.546231e-03	k: 882	n:370000
OBSCN   370000 perm   257 sec   (1438 perm/sec)   p_kst 2.383784e-03   p_cons 8.787865e-01   p_joint 6.762162e-03

Joint ci ratio: 7.804736e-02	ci left: 6.337262e-03	ci right 6.854516e-03	k: 2505	n:380000
Cons ci ratio: 2.361202e-03	ci left: 8.777925e-01	ci right 8.798702e-01	k: 333957	n:380000
KS ci ratio: 1.292227e-01	ci left: 2.259647e-03	ci right 2.574333e-03	k: 917	n:380000
OBSCN   380000 perm   266 sec   (1431 perm/sec)   p_kst 2.413158e-03   p_cons 8.788342e-01   p_joint 6.592105e-03

Joint ci ratio: 7.481686e-02	ci left: 6.728142e-03	ci right 7.253582e-03	k: 2725	n:390000
Cons ci ratio: 2.329873e-03	ci left: 8.778849e-01	ci right 8.799351e-01	k: 342776	n:390000
KS ci ratio: 1.278384e-01	ci left: 2.251340e-03	ci right 2.561255e-03	k: 937	n:390000
OBSCN   390000 perm   274 sec   (1423 perm/sec)   p_kst 2.402564e-03   p_cons 8.789128e-01   p_joint 6.987179e-03

Joint ci ratio: 7.128813e-02	ci left: 7.234952e-03	ci right 7.772220e-03	k: 3000	n:400000
Cons ci ratio: 2.299839e-03	ci left: 8.779653e-01	ci right 8.799892e-01	k: 351592	n:400000
KS ci ratio: 1.264975e-01	ci left: 2.243465e-03	ci right 2.548814e-03	k: 957	n:400000
OBSCN   400000 perm   283 sec   (1415 perm/sec)   p_kst 2.392500e-03   p_cons 8.789800e-01   p_joint 7.500000e-03

Joint ci ratio: 7.059893e-02	ci left: 7.199834e-03	ci right 7.729114e-03	k: 3059	n:410000
Cons ci ratio: 2.272316e-03	ci left: 8.779122e-01	ci right 8.799117e-01	k: 360355	n:410000
KS ci ratio: 1.246879e-01	ci left: 2.254895e-03	ci right 2.557084e-03	k: 985	n:410000
OBSCN   410000 perm   291 sec   (1407 perm/sec)   p_kst 2.402439e-03   p_cons 8.789146e-01   p_joint 7.460976e-03

Joint ci ratio: 7.064014e-02	ci left: 7.021370e-03	ci right 7.537843e-03	k: 3056	n:420000
Cons ci ratio: 2.243824e-03	ci left: 8.780457e-01	ci right 8.800205e-01	k: 369195	n:420000
KS ci ratio: 1.230755e-01	ci left: 2.261194e-03	ci right 2.560023e-03	k: 1011	n:420000
OBSCN   420000 perm   301 sec   (1396 perm/sec)   p_kst 2.407143e-03   p_cons 8.790357e-01   p_joint 7.276190e-03

Joint ci ratio: 6.923451e-02	ci left: 7.143712e-03	ci right 7.658308e-03	k: 3181	n:430000
Cons ci ratio: 2.217055e-03	ci left: 8.781079e-01	ci right 8.800591e-01	k: 378007	n:430000
KS ci ratio: 1.155405e-01	ci left: 2.515475e-03	ci right 2.826170e-03	k: 1147	n:430000
OBSCN   430000 perm   310 sec   (1387 perm/sec)   p_kst 2.667442e-03   p_cons 8.790860e-01   p_joint 7.397674e-03

Joint ci ratio: 6.895717e-02	ci left: 7.039412e-03	ci right 7.544382e-03	k: 3207	n:440000
Cons ci ratio: 2.191291e-03	ci left: 8.781604e-01	ci right 8.800891e-01	k: 386816	n:440000
KS ci ratio: 1.144006e-01	ci left: 2.509074e-03	ci right 2.815715e-03	k: 1170	n:440000
OBSCN   440000 perm   319 sec   (1380 perm/sec)   p_kst 2.659091e-03   p_cons 8.791273e-01   p_joint 7.288636e-03

Joint ci ratio: 6.948832e-02	ci left: 6.778128e-03	ci right 7.268251e-03	k: 3159	n:450000
Cons ci ratio: 2.167719e-03	ci left: 8.780815e-01	ci right 8.799892e-01	k: 395567	n:450000
KS ci ratio: 1.129624e-01	ci left: 2.518089e-03	ci right 2.821704e-03	k: 1200	n:450000
OBSCN   450000 perm   328 sec   (1372 perm/sec)   p_kst 2.666667e-03   p_cons 8.790378e-01   p_joint 7.020000e-03

Joint ci ratio: 7.045415e-02	ci left: 6.449190e-03	ci right 6.922273e-03	k: 3074	n:460000
Cons ci ratio: 2.142939e-03	ci left: 8.782002e-01	ci right 8.800863e-01	k: 404407	n:460000
KS ci ratio: 1.122187e-01	ci left: 2.497149e-03	ci right 2.796126e-03	k: 1216	n:460000
OBSCN   460000 perm   337 sec   (1365 perm/sec)   p_kst 2.643478e-03   p_cons 8.791457e-01   p_joint 6.682609e-03

Joint ci ratio: 7.047073e-02	ci left: 6.309867e-03	ci right 6.772843e-03	k: 3073	n:470000
Cons ci ratio: 2.119010e-03	ci left: 8.783119e-01	ci right 8.801771e-01	k: 413246	n:470000
KS ci ratio: 1.108602e-01	ci left: 2.506068e-03	ci right 2.802244e-03	k: 1246	n:470000
OBSCN   470000 perm   346 sec   (1358 perm/sec)   p_kst 2.651064e-03   p_cons 8.792468e-01   p_joint 6.538298e-03

Joint ci ratio: 7.014333e-02	ci left: 6.237758e-03	ci right 6.693230e-03	k: 3102	n:480000
Cons ci ratio: 2.096336e-03	ci left: 8.783709e-01	ci right 8.802162e-01	k: 422062	n:480000
KS ci ratio: 1.095929e-01	ci left: 2.512610e-03	ci right 2.805945e-03	k: 1275	n:480000
OBSCN   480000 perm   355 sec   (1350 perm/sec)   p_kst 2.656250e-03   p_cons 8.792958e-01   p_joint 6.462500e-03

Joint ci ratio: 6.958600e-02	ci left: 6.210712e-03	ci right 6.660460e-03	k: 3152	n:490000
Cons ci ratio: 2.098701e-03	ci left: 8.759236e-01	ci right 8.777658e-01	k: 429655	n:490000
KS ci ratio: 1.085768e-01	ci left: 2.508975e-03	ci right 2.798996e-03	k: 1299	n:490000
OBSCN   490000 perm   365 sec   (1342 perm/sec)   p_kst 2.651020e-03   p_cons 8.768469e-01   p_joint 6.432653e-03

Joint ci ratio: 6.903088e-02	ci left: 6.186727e-03	ci right 6.631022e-03	k: 3203	n:500000
Cons ci ratio: 2.076693e-03	ci left: 8.760283e-01	ci right 8.778514e-01	k: 438471	n:500000
KS ci ratio: 1.075071e-01	ci left: 2.509390e-03	ci right 2.796421e-03	k: 1325	n:500000
OBSCN   500000 perm   375 sec   (1334 perm/sec)   p_kst 2.650000e-03   p_cons 8.769420e-01   p_joint 6.406000e-03

Joint ci ratio: 6.901358e-02	ci left: 6.069260e-03	ci right 6.505005e-03	k: 3205	n:510000
Cons ci ratio: 2.055175e-03	ci left: 8.761486e-01	ci right 8.779530e-01	k: 447297	n:510000
KS ci ratio: 1.067459e-01	ci left: 2.496442e-03	ci right 2.779843e-03	k: 1344	n:510000
OBSCN   510000 perm   384 sec   (1327 perm/sec)   p_kst 2.635294e-03   p_cons 8.770529e-01   p_joint 6.284314e-03

Joint ci ratio: 6.926822e-02	ci left: 5.909061e-03	ci right 6.334932e-03	k: 3182	n:520000
Cons ci ratio: 2.034620e-03	ci left: 8.762316e-01	ci right 8.780181e-01	k: 456106	n:520000
KS ci ratio: 1.056516e-01	ci left: 2.500850e-03	ci right 2.781660e-03	k: 1372	n:520000
OBSCN   520000 perm   394 sec   (1321 perm/sec)   p_kst 2.638462e-03   p_cons 8.771269e-01   p_joint 6.119231e-03

Joint ci ratio: 6.653059e-02	ci left: 6.290977e-03	ci right 6.725764e-03	k: 3448	n:530000
Cons ci ratio: 2.014615e-03	ci left: 8.763172e-01	ci right 8.780862e-01	k: 464918	n:530000
KS ci ratio: 1.047029e-01	ci left: 2.499593e-03	ci right 2.777586e-03	k: 1397	n:530000
OBSCN   530000 perm   403 sec   (1314 perm/sec)   p_kst 2.635849e-03   p_cons 8.772038e-01   p_joint 6.505660e-03

Joint ci ratio: 6.640878e-02	ci left: 6.198142e-03	ci right 6.625698e-03	k: 3461	n:540000
Cons ci ratio: 1.996681e-03	ci left: 8.762381e-01	ci right 8.779912e-01	k: 473643	n:540000
KS ci ratio: 1.042207e-01	ci left: 2.476748e-03	ci right 2.750854e-03	k: 1410	n:540000
OBSCN   540000 perm   413 sec   (1308 perm/sec)   p_kst 2.611111e-03   p_cons 8.771167e-01   p_joint 6.409259e-03

Joint ci ratio: 6.591632e-02	ci left: 6.178428e-03	ci right 6.601343e-03	k: 3513	n:550000
Cons ci ratio: 1.978665e-03	ci left: 8.762221e-01	ci right 8.779594e-01	k: 482401	n:550000
KS ci ratio: 1.029152e-01	ci left: 2.495476e-03	ci right 2.767987e-03	k: 1446	n:550000
OBSCN   550000 perm   422 sec   (1302 perm/sec)   p_kst 2.629091e-03   p_cons 8.770927e-01   p_joint 6.387273e-03

Joint ci ratio: 6.537933e-02	ci left: 6.169969e-03	ci right 6.588734e-03	k: 3571	n:560000
Cons ci ratio: 1.960674e-03	ci left: 8.762569e-01	ci right 8.779784e-01	k: 491187	n:560000
KS ci ratio: 1.014519e-01	ci left: 2.524000e-03	ci right 2.795472e-03	k: 1488	n:560000
OBSCN   560000 perm   432 sec   (1296 perm/sec)   p_kst 2.657143e-03   p_cons 8.771196e-01   p_joint 6.376786e-03

Joint ci ratio: 6.563309e-02	ci left: 6.015116e-03	ci right 6.425015e-03	k: 3544	n:570000
Cons ci ratio: 1.943370e-03	ci left: 8.762677e-01	ci right 8.779740e-01	k: 499960	n:570000
KS ci ratio: 1.006776e-01	ci left: 2.519049e-03	ci right 2.787800e-03	k: 1511	n:570000
OBSCN   570000 perm   442 sec   (1289 perm/sec)   p_kst 2.650877e-03   p_cons 8.771228e-01   p_joint 6.217544e-03

Joint ci ratio: 6.355065e-02	ci left: 6.310066e-03	ci right 6.725920e-03	k: 3779	n:580000
Cons ci ratio: 1.926517e-03	ci left: 8.762782e-01	ci right 8.779697e-01	k: 508733	n:580000
KS ci ratio: 9.972560e-02	ci left: 2.524365e-03	ci right 2.790986e-03	k: 1540	n:580000
OBSCN   580000 perm   452 sec   (1282 perm/sec)   p_kst 2.655172e-03   p_cons 8.771259e-01   p_joint 6.515517e-03

Outputting figure to mutsig2_images.part000000000119/OBSCN.23_25533_580000_0.0026552_0.87713_0.0065155.png
                gene_name: OBSCN
               theta_stop: 0.100 
                    nperm: 580000 
                     p_ks: 0.0027 
        ci_ks_bounds_left: 0.0025 
       ci_ks_bounds_right: 0.0028 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.0065 
     ci_joint_bounds_left: 0.0063 
    ci_joint_bounds_right: 0.0067 

Current progress: 6 percent done.
ODZ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.226475e-02	ci left: 1.458000e-01	ci right 1.600028e-01	k: 1528	n:10000
Cons ci ratio: 1.330145e-02	ci left: 8.906714e-01	ci right 9.026964e-01	k: 8968	n:10000
KS ci ratio: 1.607861e-01	ci left: 5.157346e-02	ci right 6.068728e-02	k: 560	n:10000
ODZ2   10000 perm   3 sec   (3741 perm/sec)   p_kst 5.600000e-02   p_cons 8.968000e-01   p_joint 1.528000e-01

Joint ci ratio: 8.043316e-02	ci left: 1.018644e-01	ci right 1.104505e-01	k: 2122	n:20000
Cons ci ratio: 9.753460e-03	ci left: 8.854293e-01	ci right 8.941570e-01	k: 17797	n:20000
KS ci ratio: 1.156747e-01	ci left: 5.115076e-02	ci right 5.747960e-02	k: 1085	n:20000
ODZ2   20000 perm   6 sec   (3262 perm/sec)   p_kst 5.425000e-02   p_cons 8.898500e-01   p_joint 1.061000e-01

Joint ci ratio: 7.527497e-02	ci left: 7.977094e-02	ci right 8.604345e-02	k: 2486	n:30000
Cons ci ratio: 8.156306e-03	ci left: 8.814036e-01	ci right 8.886550e-01	k: 26552	n:30000
KS ci ratio: 9.357116e-02	ci left: 5.267489e-02	ci right 5.787832e-02	k: 1657	n:30000
ODZ2   30000 perm   9 sec   (3191 perm/sec)   p_kst 5.523333e-02   p_cons 8.850667e-01   p_joint 8.286667e-02

Outputting figure to mutsig2_images.part000000000119/ODZ2.19_8414_30000_0.055233_0.88507_0.082867.png
                gene_name: ODZ2
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.086 

Current progress: 8 percent done.
OGDHL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.995533e-02	ci left: 3.714676e-01	ci right 3.906018e-01	k: 3810	n:10000
Cons ci ratio: 2.602805e-02	ci left: 6.848624e-01	ci right 7.030245e-01	k: 6940	n:10000
KS ci ratio: 7.174331e-02	ci left: 2.215840e-01	ci right 2.381737e-01	k: 2298	n:10000
OGDHL   10000 perm   2 sec   (5019 perm/sec)   p_kst 2.298000e-01   p_cons 6.940000e-01   p_joint 3.810000e-01

Outputting figure to mutsig2_images.part000000000119/OGDHL.11_3121_10000_0.2298_0.694_0.381.png
                gene_name: OGDHL
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 10 percent done.
ODZ4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.142066e-02	ci left: 2.231634e-01	ci right 2.397933e-01	k: 2314	n:10000
Cons ci ratio: 1.922228e-03	ci left: 9.965509e-01	ci right 9.985415e-01	k: 9977	n:10000
KS ci ratio: 1.060498e-01	ci left: 1.137899e-01	ci right 1.266323e-01	k: 1201	n:10000
ODZ4   10000 perm   3 sec   (3571 perm/sec)   p_kst 1.201000e-01   p_cons 9.977000e-01   p_joint 2.314000e-01

Joint ci ratio: 5.403829e-02	ci left: 2.026402e-01	ci right 2.139448e-01	k: 4165	n:20000
Cons ci ratio: 1.316125e-03	ci left: 9.970477e-01	ci right 9.984010e-01	k: 19956	n:20000
KS ci ratio: 7.605461e-02	ci left: 1.127730e-01	ci right 1.217386e-01	k: 2344	n:20000
ODZ4   20000 perm   6 sec   (3307 perm/sec)   p_kst 1.172000e-01   p_cons 9.978000e-01   p_joint 2.082500e-01

Outputting figure to mutsig2_images.part000000000119/ODZ4.10_8430_20000_0.1172_0.9978_0.20825.png
                gene_name: ODZ4
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 12 percent done.
OPCML
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.798921e-02	ci left: 6.529346e-01	ci right 6.715708e-01	k: 6623	n:10000
Cons ci ratio: 4.573716e-02	ci left: 4.136894e-01	ci right 4.331553e-01	k: 4234	n:10000
KS ci ratio: 2.767080e-02	ci left: 6.580680e-01	ci right 6.766344e-01	k: 6674	n:10000
OPCML   10000 perm   2 sec   (5526 perm/sec)   p_kst 6.674000e-01   p_cons 4.234000e-01   p_joint 6.623000e-01

Outputting figure to mutsig2_images.part000000000119/OPCML.10_1131_10000_0.6674_0.4234_0.6623.png
                gene_name: OPCML
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 13 percent done.
OCRL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.027334e-02	ci left: 9.308177e-01	ci right 9.405266e-01	k: 9358	n:10000
KS ci ratio: 3.234426e-02	ci left: 5.852018e-01	ci right 6.045429e-01	k: 5949	n:10000
OCRL   10000 perm   2 sec   (4855 perm/sec)   p_kst 5.949000e-01   p_cons 9.358000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OCRL.9_2802_10000_0.5949_0.9358_1.png
                gene_name: OCRL
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
ODF2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.070219e-02	ci left: 9.255458e-01	ci right 9.356016e-01	k: 9307	n:10000
KS ci ratio: 1.360105e-02	ci left: 8.863668e-01	ci right 8.986035e-01	k: 8926	n:10000
ODF2L   10000 perm   2 sec   (4836 perm/sec)   p_kst 8.926000e-01   p_cons 9.307000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/ODF2L.8_2155_10000_0.8926_0.9307_1.png
                gene_name: ODF2L
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
OLFML2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.813948e-02	ci left: 6.505193e-01	ci right 6.691875e-01	k: 6599	n:10000
KS ci ratio: 2.532550e-02	ci left: 6.964572e-01	ci right 7.144230e-01	k: 7055	n:10000
OLFML2B   10000 perm   2 sec   (5298 perm/sec)   p_kst 7.055000e-01   p_cons 6.599000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OLFML2B.8_2285_10000_0.7055_0.6599_1.png
                gene_name: OLFML2B
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
OAS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.947173e-02	ci left: 3.760446e-01	ci right 3.952221e-01	k: 3856	n:10000
Cons ci ratio: 9.461386e-02	ci left: 1.395251e-01	ci right 1.534815e-01	k: 1464	n:10000
KS ci ratio: 1.756598e-02	ci left: 8.253397e-01	ci right 8.400660e-01	k: 8328	n:10000
OAS2   10000 perm   2 sec   (5153 perm/sec)   p_kst 8.328000e-01   p_cons 1.464000e-01   p_joint 3.856000e-01

Outputting figure to mutsig2_images.part000000000119/OAS2.7_2290_10000_0.8328_0.1464_0.3856.png
                gene_name: OAS2
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 21 percent done.
OGFRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.641604e-02	ci left: 5.268671e-01	ci right 5.465115e-01	k: 5367	n:10000
Cons ci ratio: 5.650599e-02	ci left: 3.156236e-01	ci right 3.340785e-01	k: 3248	n:10000
KS ci ratio: 3.505392e-02	ci left: 5.457959e-01	ci right 5.653717e-01	k: 5556	n:10000
OGFRL1   10000 perm   2 sec   (5795 perm/sec)   p_kst 5.556000e-01   p_cons 3.248000e-01   p_joint 5.367000e-01

Outputting figure to mutsig2_images.part000000000119/OGFRL1.7_1384_10000_0.5556_0.3248_0.5367.png
                gene_name: OGFRL1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 23 percent done.
OLFM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.249207e-02	ci left: 5.829942e-01	ci right 6.023518e-01	k: 5927	n:10000
Cons ci ratio: 6.673845e-02	ci left: 2.478638e-01	ci right 2.650783e-01	k: 2564	n:10000
KS ci ratio: 2.592394e-02	ci left: 6.865760e-01	ci right 7.047099e-01	k: 6957	n:10000
OLFM1   10000 perm   2 sec   (5458 perm/sec)   p_kst 6.957000e-01   p_cons 2.564000e-01   p_joint 5.927000e-01

Outputting figure to mutsig2_images.part000000000119/OLFM1.7_1438_10000_0.6957_0.2564_0.5927.png
                gene_name: OLFM1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 25 percent done.
OLFML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.842255e-02	ci left: 1.920014e-01	ci right 2.077738e-01	k: 1998	n:10000
Cons ci ratio: 1.201483e-01	ci left: 9.039166e-02	ci right 1.020448e-01	k: 961	n:10000
KS ci ratio: 7.832462e-02	ci left: 1.923954e-01	ci right 2.081796e-01	k: 2002	n:10000
OLFML1   10000 perm   2 sec   (5223 perm/sec)   p_kst 2.002000e-01   p_cons 9.610000e-02   p_joint 1.998000e-01

Joint ci ratio: 7.670452e-02	ci left: 1.110523e-01	ci right 1.199599e-01	k: 2309	n:20000
Cons ci ratio: 9.162077e-02	ci left: 7.999553e-02	ci right 8.772596e-02	k: 1676	n:20000
KS ci ratio: 5.461841e-02	ci left: 1.991758e-01	ci right 2.104101e-01	k: 4095	n:20000
OLFML1   20000 perm   4 sec   (4748 perm/sec)   p_kst 2.047500e-01   p_cons 8.380000e-02   p_joint 1.154500e-01

Outputting figure to mutsig2_images.part000000000119/OLFML1.7_1221_20000_0.20475_0.0838_0.11545.png
                gene_name: OLFML1
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 27 percent done.
OPHN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.409992e-03	ci left: 9.785573e-01	ci right 9.839571e-01	k: 9814	n:10000
KS ci ratio: 1.793668e-02	ci left: 8.193399e-01	ci right 8.342692e-01	k: 8269	n:10000
OPHN1   10000 perm   2 sec   (4670 perm/sec)   p_kst 8.269000e-01   p_cons 9.814000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OPHN1.7_2501_10000_0.8269_0.9814_1.png
                gene_name: OPHN1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
NYNRIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.728722e-01	ci left: 4.465920e-02	ci right 5.320602e-02	k: 488	n:10000
Cons ci ratio: 1.038998e-01	ci left: 1.180892e-01	ci right 1.311304e-01	k: 1245	n:10000
KS ci ratio: 2.801592e-01	ci left: 1.650803e-02	ci right 2.197711e-02	k: 191	n:10000
NYNRIN   10000 perm   2 sec   (4300 perm/sec)   p_kst 1.910000e-02   p_cons 1.245000e-01   p_joint 4.880000e-02

Joint ci ratio: 1.940254e-01	ci left: 1.805714e-02	ci right 2.198415e-02	k: 399	n:20000
Cons ci ratio: 7.363845e-02	ci left: 1.195114e-01	ci right 1.286982e-01	k: 2481	n:20000
KS ci ratio: 1.927994e-01	ci left: 1.829524e-02	ci right 2.224596e-02	k: 404	n:20000
NYNRIN   20000 perm   5 sec   (3915 perm/sec)   p_kst 2.020000e-02   p_cons 1.240500e-01   p_joint 1.995000e-02

Joint ci ratio: 1.462073e-01	ci left: 2.168684e-02	ci right 2.513964e-02	k: 701	n:30000
Cons ci ratio: 5.936377e-02	ci left: 1.231201e-01	ci right 1.306857e-01	k: 3806	n:30000
KS ci ratio: 1.555373e-01	ci left: 1.911875e-02	ci right 2.237499e-02	k: 621	n:30000
NYNRIN   30000 perm   8 sec   (3752 perm/sec)   p_kst 2.070000e-02   p_cons 1.268667e-01   p_joint 2.336667e-02

Joint ci ratio: 1.169928e-01	ci left: 2.570066e-02	ci right 2.891846e-02	k: 1091	n:40000
Cons ci ratio: 4.858786e-02	ci left: 1.365391e-01	ci right 1.433633e-01	k: 5597	n:40000
KS ci ratio: 1.344791e-01	ci left: 1.939962e-02	ci right 2.222055e-02	k: 831	n:40000
NYNRIN   40000 perm   11 sec   (3660 perm/sec)   p_kst 2.077500e-02   p_cons 1.399250e-01   p_joint 2.727500e-02

Joint ci ratio: 1.153911e-01	ci left: 2.125674e-02	ci right 2.387910e-02	k: 1127	n:50000
Cons ci ratio: 4.335219e-02	ci left: 1.374848e-01	ci right 1.435970e-01	k: 7026	n:50000
KS ci ratio: 1.223402e-01	ci left: 1.888779e-02	ci right 2.136837e-02	k: 1005	n:50000
NYNRIN   50000 perm   14 sec   (3559 perm/sec)   p_kst 2.010000e-02   p_cons 1.405200e-01   p_joint 2.254000e-02

Joint ci ratio: 1.142780e-01	ci left: 1.813314e-02	ci right 2.034704e-02	k: 1153	n:60000
Cons ci ratio: 3.976559e-02	ci left: 1.366047e-01	ci right 1.421636e-01	k: 8362	n:60000
KS ci ratio: 1.101633e-01	ci left: 1.952700e-02	ci right 2.181969e-02	k: 1239	n:60000
NYNRIN   60000 perm   17 sec   (3461 perm/sec)   p_kst 2.065000e-02   p_cons 1.393667e-01   p_joint 1.921667e-02

Joint ci ratio: 1.111073e-01	ci left: 1.649984e-02	ci right 1.845474e-02	k: 1222	n:70000
Cons ci ratio: 3.696969e-02	ci left: 1.358214e-01	ci right 1.409515e-01	k: 9686	n:70000
KS ci ratio: 1.034867e-01	ci left: 1.904529e-02	ci right 2.113762e-02	k: 1405	n:70000
NYNRIN   70000 perm   20 sec   (3427 perm/sec)   p_kst 2.007143e-02   p_cons 1.383714e-01   p_joint 1.745714e-02

Joint ci ratio: 1.090770e-01	ci left: 1.502021e-02	ci right 1.676516e-02	k: 1270	n:80000
Cons ci ratio: 3.459625e-02	ci left: 1.358899e-01	ci right 1.406864e-01	k: 11062	n:80000
KS ci ratio: 9.621975e-02	ci left: 1.934615e-02	ci right 2.131385e-02	k: 1625	n:80000
NYNRIN   80000 perm   24 sec   (3391 perm/sec)   p_kst 2.031250e-02   p_cons 1.382750e-01   p_joint 1.587500e-02

Joint ci ratio: 9.624027e-02	ci left: 1.722819e-02	ci right 1.898084e-02	k: 1628	n:90000
Cons ci ratio: 3.256891e-02	ci left: 1.363818e-01	ci right 1.409082e-01	k: 12477	n:90000
KS ci ratio: 9.110531e-02	ci left: 1.923650e-02	ci right 2.108350e-02	k: 1813	n:90000
NYNRIN   90000 perm   27 sec   (3348 perm/sec)   p_kst 2.014444e-02   p_cons 1.386333e-01   p_joint 1.808889e-02

Outputting figure to mutsig2_images.part000000000119/NYNRIN.6_5729_90000_0.020144_0.13863_0.018089.png
                gene_name: NYNRIN
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 31 percent done.
ODF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.029646e-02	ci left: 7.804640e-01	ci right 7.965676e-01	k: 7886	n:10000
Cons ci ratio: 4.654243e-02	ci left: 4.052191e-01	ci right 4.246305e-01	k: 4149	n:10000
KS ci ratio: 3.444063e-02	ci left: 5.545140e-01	ci right 5.740485e-01	k: 5643	n:10000
ODF2   10000 perm   2 sec   (4804 perm/sec)   p_kst 5.643000e-01   p_cons 4.149000e-01   p_joint 7.886000e-01

Outputting figure to mutsig2_images.part000000000119/ODF2.6_2688_10000_0.5643_0.4149_0.7886.png
                gene_name: ODF2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 33 percent done.
OIT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.075657e-03	ci left: 9.447135e-01	ci right 9.534225e-01	k: 9492	n:10000
Cons ci ratio: 2.197400e-02	ci left: 7.524148e-01	ci right 7.692330e-01	k: 7609	n:10000
KS ci ratio: 1.969253e-02	ci left: 7.905018e-01	ci right 8.063240e-01	k: 7985	n:10000
OIT3   10000 perm   2 sec   (5625 perm/sec)   p_kst 7.985000e-01   p_cons 7.609000e-01   p_joint 9.492000e-01

Outputting figure to mutsig2_images.part000000000119/OIT3.6_1674_10000_0.7985_0.7609_0.9492.png
                gene_name: OIT3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 35 percent done.
OLFM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.742002e-02	ci left: 3.086781e-01	ci right 3.270281e-01	k: 3178	n:10000
Cons ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
KS ci ratio: 3.073150e-02	ci left: 6.096996e-01	ci right 6.288309e-01	k: 6193	n:10000
OLFM3   10000 perm   2 sec   (5547 perm/sec)   p_kst 6.193000e-01   p_cons 8.370000e-02   p_joint 3.178000e-01

Joint ci ratio: 4.606783e-02	ci left: 2.596374e-01	ci right 2.719307e-01	k: 5315	n:20000
Cons ci ratio: 9.490190e-02	ci left: 7.485789e-02	ci right 8.236516e-02	k: 1571	n:20000
KS ci ratio: 2.124814e-02	ci left: 6.231147e-01	ci right 6.365475e-01	k: 12597	n:20000
OLFM3   20000 perm   4 sec   (4984 perm/sec)   p_kst 6.298500e-01   p_cons 7.855000e-02   p_joint 2.657500e-01

Outputting figure to mutsig2_images.part000000000119/OLFM3.6_1401_20000_0.62985_0.07855_0.26575.png
                gene_name: OLFM3
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 37 percent done.
OAS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.021042e-02	ci left: 3.690799e-01	ci right 3.881908e-01	k: 3786	n:10000
Cons ci ratio: 7.781489e-02	ci left: 1.944641e-01	ci right 2.103097e-01	k: 2023	n:10000
KS ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
OAS3   10000 perm   2 sec   (5091 perm/sec)   p_kst 5.464000e-01   p_cons 2.023000e-01   p_joint 3.786000e-01

Outputting figure to mutsig2_images.part000000000119/OAS3.5_3328_10000_0.5464_0.2023_0.3786.png
                gene_name: OAS3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 38 percent done.
OBSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.990030e-02	ci left: 7.870536e-01	ci right 8.029742e-01	k: 7951	n:10000
Cons ci ratio: 2.934000e-02	ci left: 6.314074e-01	ci right 6.503105e-01	k: 6409	n:10000
KS ci ratio: 3.205655e-02	ci left: 5.895172e-01	ci right 6.088250e-01	k: 5992	n:10000
OBSL1   10000 perm   2 sec   (4217 perm/sec)   p_kst 5.992000e-01   p_cons 6.409000e-01   p_joint 7.951000e-01

Outputting figure to mutsig2_images.part000000000119/OBSL1.5_5927_10000_0.5992_0.6409_0.7951.png
                gene_name: OBSL1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 40 percent done.
OCA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.612611e-02	ci left: 6.832497e-01	ci right 7.014381e-01	k: 6924	n:10000
Cons ci ratio: 1.903571e-02	ci left: 8.013591e-01	ci right 8.168604e-01	k: 8092	n:10000
KS ci ratio: 3.799000e-02	ci left: 5.057516e-01	ci right 5.254393e-01	k: 5156	n:10000
OCA2   10000 perm   2 sec   (5451 perm/sec)   p_kst 5.156000e-01   p_cons 8.092000e-01   p_joint 6.924000e-01

Outputting figure to mutsig2_images.part000000000119/OCA2.5_2609_10000_0.5156_0.8092_0.6924.png
                gene_name: OCA2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 42 percent done.
ODC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.815110e-02	ci left: 3.888849e-01	ci right 4.081742e-01	k: 3985	n:10000
Cons ci ratio: 1.162440e-01	ci left: 9.613473e-02	ci right 1.080982e-01	k: 1020	n:10000
KS ci ratio: 1.590375e-02	ci left: 8.517184e-01	ci right 8.654720e-01	k: 8587	n:10000
ODC1   10000 perm   2 sec   (5597 perm/sec)   p_kst 8.587000e-01   p_cons 1.020000e-01   p_joint 3.985000e-01

Joint ci ratio: 4.310394e-02	ci left: 2.862009e-01	ci right 2.988595e-01	k: 5850	n:20000
Cons ci ratio: 8.244601e-02	ci left: 9.734785e-02	ci right 1.057684e-01	k: 2030	n:20000
KS ci ratio: 1.129805e-02	ci left: 8.526292e-01	ci right 8.623667e-01	k: 17151	n:20000
ODC1   20000 perm   4 sec   (4993 perm/sec)   p_kst 8.575500e-01   p_cons 1.015000e-01   p_joint 2.925000e-01

Outputting figure to mutsig2_images.part000000000119/ODC1.5_1426_20000_0.85755_0.1015_0.2925.png
                gene_name: ODC1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 44 percent done.
OFD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.469983e-02	ci left: 1.688761e-01	ci right 1.839129e-01	k: 1763	n:10000
Cons ci ratio: 6.208866e-02	ci left: 2.760670e-01	ci right 2.938584e-01	k: 2849	n:10000
KS ci ratio: 8.951618e-02	ci left: 1.536497e-01	ci right 1.681484e-01	k: 1608	n:10000
OFD1   10000 perm   2 sec   (5149 perm/sec)   p_kst 1.608000e-01   p_cons 2.849000e-01   p_joint 1.763000e-01

Outputting figure to mutsig2_images.part000000000119/OFD1.5_3131_10000_0.1608_0.2849_0.1763.png
                gene_name: OFD1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 46 percent done.
OGT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.763418e-02	ci left: 5.104535e-01	ci right 5.301346e-01	k: 5203	n:10000
Cons ci ratio: 2.753382e-02	ci left: 6.602828e-01	ci right 6.788183e-01	k: 6696	n:10000
KS ci ratio: 5.319849e-02	ci left: 3.424348e-01	ci right 3.612516e-01	k: 3518	n:10000
OGT   10000 perm   2 sec   (4951 perm/sec)   p_kst 3.518000e-01   p_cons 6.696000e-01   p_joint 5.203000e-01

Outputting figure to mutsig2_images.part000000000119/OGT.5_3229_10000_0.3518_0.6696_0.5203.png
                gene_name: OGT
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 48 percent done.
ODF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.355244e-02	ci left: 2.129985e-01	ci right 2.293642e-01	k: 2211	n:10000
Cons ci ratio: 2.233008e-02	ci left: 7.464469e-01	ci right 7.634043e-01	k: 7550	n:10000
KS ci ratio: 1.251787e-01	ci left: 8.368370e-02	ci right 9.495688e-02	k: 892	n:10000
ODF1   10000 perm   2 sec   (5398 perm/sec)   p_kst 8.920000e-02   p_cons 7.550000e-01   p_joint 2.211000e-01

Joint ci ratio: 6.036061e-02	ci left: 1.688674e-01	ci right 1.794275e-01	k: 3482	n:20000
Cons ci ratio: 1.589653e-02	ci left: 7.464576e-01	ci right 7.584690e-01	k: 15050	n:20000
KS ci ratio: 8.862553e-02	ci left: 8.513767e-02	ci right 9.308226e-02	k: 1781	n:20000
ODF1   20000 perm   4 sec   (4948 perm/sec)   p_kst 8.905000e-02   p_cons 7.525000e-01   p_joint 1.741000e-01

Outputting figure to mutsig2_images.part000000000119/ODF1.4_761_20000_0.08905_0.7525_0.1741.png
                gene_name: ODF1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 50 percent done.
OGDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.724836e-02	ci left: 3.099678e-01	ci right 3.283376e-01	k: 3191	n:10000
Cons ci ratio: 6.928093e-02	ci left: 2.340268e-01	ci right 2.509234e-01	k: 2424	n:10000
KS ci ratio: 5.768586e-02	ci left: 3.066941e-01	ci right 3.250132e-01	k: 3158	n:10000
OGDH   10000 perm   2 sec   (5238 perm/sec)   p_kst 3.158000e-01   p_cons 2.424000e-01   p_joint 3.191000e-01

Outputting figure to mutsig2_images.part000000000119/OGDH.4_3333_10000_0.3158_0.2424_0.3191.png
                gene_name: OGDH
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 52 percent done.
OLFM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.524960e-02	ci left: 2.564684e-01	ci right 2.738686e-01	k: 2651	n:10000
Cons ci ratio: 8.931779e-02	ci left: 1.542387e-01	ci right 1.687591e-01	k: 1614	n:10000
KS ci ratio: 3.401542e-02	ci left: 5.606285e-01	ci right 5.801305e-01	k: 5704	n:10000
OLFM4   10000 perm   2 sec   (5811 perm/sec)   p_kst 5.704000e-01   p_cons 1.614000e-01   p_joint 2.651000e-01

Outputting figure to mutsig2_images.part000000000119/OLFM4.4_1553_10000_0.5704_0.1614_0.2651.png
                gene_name: OLFM4
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 54 percent done.
OLFML2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.553891e-02	ci left: 6.929276e-01	ci right 7.109546e-01	k: 7020	n:10000
Cons ci ratio: 7.192613e-02	ci left: 2.206956e-01	ci right 2.372626e-01	k: 2289	n:10000
KS ci ratio: 3.434269e-02	ci left: 5.559172e-01	ci right 5.754445e-01	k: 5657	n:10000
OLFML2A   10000 perm   2 sec   (5860 perm/sec)   p_kst 5.657000e-01   p_cons 2.289000e-01   p_joint 7.020000e-01

Outputting figure to mutsig2_images.part000000000119/OLFML2A.4_1991_10000_0.5657_0.2289_0.702.png
                gene_name: OLFML2A
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 56 percent done.
OMA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.453877e-02	ci left: 5.531109e-01	ci right 5.726525e-01	k: 5629	n:10000
Cons ci ratio: 9.463632e-03	ci left: 9.403504e-01	ci right 9.493882e-01	k: 9450	n:10000
KS ci ratio: 6.382384e-02	ci left: 2.650773e-01	ci right 2.826547e-01	k: 2738	n:10000
OMA1   10000 perm   2 sec   (5453 perm/sec)   p_kst 2.738000e-01   p_cons 9.450000e-01   p_joint 5.629000e-01

Outputting figure to mutsig2_images.part000000000119/OMA1.4_1607_10000_0.2738_0.945_0.5629.png
                gene_name: OMA1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 58 percent done.
OMD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.855993e-01	ci left: 3.872553e-02	ci right 4.674361e-02	k: 426	n:10000
Cons ci ratio: 3.301551e-01	ci left: 1.160595e-02	ci right 1.628351e-02	k: 138	n:10000
KS ci ratio: 1.000817e-01	ci left: 1.263042e-01	ci right 1.397104e-01	k: 1329	n:10000
OMD   10000 perm   2 sec   (5864 perm/sec)   p_kst 1.329000e-01   p_cons 1.380000e-02   p_joint 4.260000e-02

Joint ci ratio: 1.920746e-01	ci left: 1.843815e-02	ci right 2.240301e-02	k: 407	n:20000
Cons ci ratio: 2.257608e-01	ci left: 1.317232e-02	ci right 1.657086e-02	k: 296	n:20000
KS ci ratio: 6.931891e-02	ci left: 1.330508e-01	ci right 1.426547e-01	k: 2756	n:20000
OMD   20000 perm   4 sec   (5246 perm/sec)   p_kst 1.378000e-01   p_cons 1.480000e-02   p_joint 2.035000e-02

Joint ci ratio: 2.149248e-01	ci left: 9.787485e-03	ci right 1.217530e-02	k: 328	n:30000
Cons ci ratio: 1.799757e-01	ci left: 1.416440e-02	ci right 1.699721e-02	k: 466	n:30000
KS ci ratio: 5.657121e-02	ci left: 1.340498e-01	ci right 1.418871e-01	k: 4138	n:30000
OMD   30000 perm   6 sec   (4991 perm/sec)   p_kst 1.379333e-01   p_cons 1.553333e-02   p_joint 1.093333e-02

Joint ci ratio: 1.401777e-01	ci left: 1.782941e-02	ci right 2.054103e-02	k: 766	n:40000
Cons ci ratio: 1.578941e-01	ci left: 1.397575e-02	ci right 1.639538e-02	k: 606	n:40000
KS ci ratio: 4.963403e-02	ci left: 1.315416e-01	ci right 1.382615e-01	k: 5395	n:40000
OMD   40000 perm   8 sec   (4748 perm/sec)   p_kst 1.348750e-01   p_cons 1.515000e-02   p_joint 1.915000e-02

Joint ci ratio: 1.406381e-01	ci left: 1.422303e-02	ci right 1.639377e-02	k: 764	n:50000
Cons ci ratio: 1.396222e-01	ci left: 1.443543e-02	ci right 1.662135e-02	k: 775	n:50000
KS ci ratio: 4.431061e-02	ci left: 1.323330e-01	ci right 1.383495e-01	k: 6766	n:50000
OMD   50000 perm   11 sec   (4627 perm/sec)   p_kst 1.353200e-01   p_cons 1.550000e-02   p_joint 1.528000e-02

Joint ci ratio: 1.310939e-01	ci left: 1.371996e-02	ci right 1.566073e-02	k: 880	n:60000
Cons ci ratio: 1.260350e-01	ci left: 1.486579e-02	ci right 1.688144e-02	k: 951	n:60000
KS ci ratio: 4.040504e-02	ci left: 1.328534e-01	ci right 1.383486e-01	k: 8135	n:60000
OMD   60000 perm   13 sec   (4475 perm/sec)   p_kst 1.355833e-01   p_cons 1.585000e-02   p_joint 1.466667e-02

Joint ci ratio: 8.713482e-02	ci left: 2.687424e-02	ci right 2.933652e-02	k: 1966	n:70000
Cons ci ratio: 1.152017e-01	ci left: 1.533326e-02	ci right 1.722143e-02	k: 1138	n:70000
KS ci ratio: 3.733052e-02	ci left: 1.335395e-01	ci right 1.386336e-01	k: 9525	n:70000
OMD   70000 perm   16 sec   (4347 perm/sec)   p_kst 1.360714e-01   p_cons 1.625714e-02   p_joint 2.808571e-02

Joint ci ratio: 9.652315e-02	ci left: 1.922410e-02	ci right 2.118591e-02	k: 1615	n:80000
Cons ci ratio: 1.075815e-01	ci left: 1.544603e-02	ci right 1.721430e-02	k: 1305	n:80000
KS ci ratio: 3.506479e-02	ci left: 1.327383e-01	ci right 1.374882e-01	k: 10808	n:80000
OMD   80000 perm   19 sec   (4288 perm/sec)   p_kst 1.351000e-01   p_cons 1.631250e-02   p_joint 2.018750e-02

Joint ci ratio: 9.727933e-02	ci left: 1.685940e-02	ci right 1.859411e-02	k: 1594	n:90000
Cons ci ratio: 1.012626e-01	ci left: 1.554779e-02	ci right 1.721693e-02	k: 1473	n:90000
KS ci ratio: 3.312579e-02	ci left: 1.324096e-01	ci right 1.368807e-01	k: 12117	n:90000
OMD   90000 perm   21 sec   (4230 perm/sec)   p_kst 1.346333e-01   p_cons 1.636667e-02   p_joint 1.771111e-02

Joint ci ratio: 7.938984e-02	ci left: 2.285430e-02	ci right 2.475346e-02	k: 2379	n:100000
Cons ci ratio: 9.552735e-02	ci left: 1.576832e-02	ci right 1.735989e-02	k: 1655	n:100000
KS ci ratio: 3.068522e-02	ci left: 1.381430e-01	ci right 1.424579e-01	k: 14029	n:100000
OMD   100000 perm   24 sec   (4156 perm/sec)   p_kst 1.402900e-01   p_cons 1.655000e-02   p_joint 2.379000e-02

Outputting figure to mutsig2_images.part000000000119/OMD.4_1274_100000_0.14029_0.01655_0.02379.png
                gene_name: OMD
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 60 percent done.
OPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.812710e-02	ci left: 5.039511e-01	ci right 5.236409e-01	k: 5138	n:10000
KS ci ratio: 1.257135e-02	ci left: 9.009330e-01	ci right 9.124288e-01	k: 9068	n:10000
OPA1   10000 perm   2 sec   (4875 perm/sec)   p_kst 9.068000e-01   p_cons 5.138000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OPA1.4_3168_10000_0.9068_0.5138_1.png
                gene_name: OPA1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
NXPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.479914e-02	ci left: 5.494030e-01	ci right 5.689625e-01	k: 5592	n:10000
Cons ci ratio: 8.921899e-02	ci left: 1.545332e-01	ci right 1.690644e-01	k: 1617	n:10000
KS ci ratio: 4.257634e-02	ci left: 4.488969e-01	ci right 4.685272e-01	k: 4587	n:10000
NXPH1   10000 perm   2 sec   (6189 perm/sec)   p_kst 4.587000e-01   p_cons 1.617000e-01   p_joint 5.592000e-01

Outputting figure to mutsig2_images.part000000000119/NXPH1.3_824_10000_0.4587_0.1617_0.5592.png
                gene_name: NXPH1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 63 percent done.
NXPH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.899925e-02	ci left: 2.355088e-01	ci right 2.524406e-01	k: 2439	n:10000
Cons ci ratio: 5.668679e-02	ci left: 3.142343e-01	ci right 3.326686e-01	k: 3234	n:10000
KS ci ratio: 9.356863e-02	ci left: 1.422698e-01	ci right 1.563351e-01	k: 1492	n:10000
NXPH3   10000 perm   2 sec   (6592 perm/sec)   p_kst 1.492000e-01   p_cons 3.234000e-01   p_joint 2.439000e-01

Outputting figure to mutsig2_images.part000000000119/NXPH3.3_767_10000_0.1492_0.3234_0.2439.png
                gene_name: NXPH3
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 65 percent done.
OASL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.187238e-02	ci left: 3.539639e-01	ci right 3.729157e-01	k: 3634	n:10000
Cons ci ratio: 2.846609e-02	ci left: 6.452870e-01	ci right 6.640228e-01	k: 6547	n:10000
KS ci ratio: 7.188542e-02	ci left: 2.208930e-01	ci right 2.374651e-01	k: 2291	n:10000
OASL   10000 perm   2 sec   (6369 perm/sec)   p_kst 2.291000e-01   p_cons 6.547000e-01   p_joint 3.634000e-01

Outputting figure to mutsig2_images.part000000000119/OASL.3_1569_10000_0.2291_0.6547_0.3634.png
                gene_name: OASL
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 67 percent done.
OBFC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.300083e-02	ci left: 3.441241e-01	ci right 3.629613e-01	k: 3535	n:10000
Cons ci ratio: 1.158024e-01	ci left: 9.681653e-02	ci right 1.088160e-01	k: 1027	n:10000
KS ci ratio: 1.258621e-02	ci left: 9.007276e-01	ci right 9.122343e-01	k: 9066	n:10000
OBFC1   10000 perm   2 sec   (5823 perm/sec)   p_kst 9.066000e-01   p_cons 1.027000e-01   p_joint 3.535000e-01

Joint ci ratio: 3.099671e-02	ci left: 4.373971e-01	ci right 4.512191e-01	k: 8886	n:20000
Cons ci ratio: 8.133614e-02	ci left: 9.980216e-02	ci right 1.083133e-01	k: 2080	n:20000
KS ci ratio: 8.908826e-03	ci left: 9.022790e-01	ci right 9.104025e-01	k: 18128	n:20000
OBFC1   20000 perm   4 sec   (5407 perm/sec)   p_kst 9.064000e-01   p_cons 1.040000e-01   p_joint 4.443000e-01

Outputting figure to mutsig2_images.part000000000119/OBFC1.3_1143_20000_0.9064_0.104_0.4443.png
                gene_name: OBFC1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 69 percent done.
OGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.997652e-02	ci left: 3.712686e-01	ci right 3.904009e-01	k: 3808	n:10000
KS ci ratio: 1.770450e-02	ci left: 8.231021e-01	ci right 8.379049e-01	k: 8306	n:10000
OGN   10000 perm   2 sec   (6187 perm/sec)   p_kst 8.306000e-01   p_cons 3.808000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OGN.3_921_10000_0.8306_0.3808_1.png
                gene_name: OGN
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
OLFM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.355812e-02	ci left: 4.376211e-01	ci right 4.572096e-01	k: 4474	n:10000
Cons ci ratio: 6.555229e-02	ci left: 2.546878e-01	ci right 2.720503e-01	k: 2633	n:10000
KS ci ratio: 5.549126e-02	ci left: 3.235641e-01	ci right 3.421333e-01	k: 3328	n:10000
OLFM2   10000 perm   2 sec   (6504 perm/sec)   p_kst 3.328000e-01   p_cons 2.633000e-01   p_joint 4.474000e-01

Outputting figure to mutsig2_images.part000000000119/OLFM2.3_1389_10000_0.3328_0.2633_0.4474.png
                gene_name: OLFM2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 73 percent done.
OLFML3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.722332e-02	ci left: 6.653172e-01	ci right 6.837810e-01	k: 6746	n:10000
Cons ci ratio: 5.007201e-02	ci left: 3.703732e-01	ci right 3.894968e-01	k: 3799	n:10000
KS ci ratio: 2.357936e-02	ci left: 7.255253e-01	ci right 7.429380e-01	k: 7343	n:10000
OLFML3   10000 perm   2 sec   (6261 perm/sec)   p_kst 7.343000e-01   p_cons 3.799000e-01   p_joint 6.746000e-01

Outputting figure to mutsig2_images.part000000000119/OLFML3.3_1233_10000_0.7343_0.3799_0.6746.png
                gene_name: OLFML3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 75 percent done.
OMG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.349480e-02	ci left: 7.269395e-01	ci right 7.443230e-01	k: 7357	n:10000
Cons ci ratio: 2.721092e-02	ci left: 6.655187e-01	ci right 6.839794e-01	k: 6748	n:10000
KS ci ratio: 3.576934e-02	ci left: 5.357789e-01	ci right 5.553945e-01	k: 5456	n:10000
OMG   10000 perm   2 sec   (5975 perm/sec)   p_kst 5.456000e-01   p_cons 6.748000e-01   p_joint 7.357000e-01

Outputting figure to mutsig2_images.part000000000119/OMG.3_1327_10000_0.5456_0.6748_0.7357.png
                gene_name: OMG
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 77 percent done.
OPN1SW
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.831423e-02	ci left: 2.391649e-01	ci right 2.561823e-01	k: 2476	n:10000
Cons ci ratio: 7.128045e-02	ci left: 2.238545e-01	ci right 2.405018e-01	k: 2321	n:10000
KS ci ratio: 7.437322e-02	ci left: 2.092502e-01	ci right 2.255148e-01	k: 2173	n:10000
OPN1SW   10000 perm   2 sec   (5914 perm/sec)   p_kst 2.173000e-01   p_cons 2.321000e-01   p_joint 2.476000e-01

Outputting figure to mutsig2_images.part000000000119/OPN1SW.3_1067_10000_0.2173_0.2321_0.2476.png
                gene_name: OPN1SW
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 79 percent done.
NXPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.377760e-02	ci left: 8.838059e-01	ci right 8.961658e-01	k: 8901	n:10000
Cons ci ratio: 4.334736e-02	ci left: 4.400155e-01	ci right 4.596137e-01	k: 4498	n:10000
KS ci ratio: 2.172642e-02	ci left: 7.565633e-01	ci right 7.732821e-01	k: 7650	n:10000
NXPH2   10000 perm   1 sec   (6697 perm/sec)   p_kst 7.650000e-01   p_cons 4.498000e-01   p_joint 8.901000e-01

Outputting figure to mutsig2_images.part000000000119/NXPH2.2_803_10000_0.765_0.4498_0.8901.png
                gene_name: NXPH2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 81 percent done.
OAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.623661e-02	ci left: 3.177077e-01	ci right 3.361932e-01	k: 3269	n:10000
Cons ci ratio: 5.065070e-02	ci left: 3.650016e-01	ci right 3.840715e-01	k: 3745	n:10000
KS ci ratio: 7.582348e-02	ci left: 2.028409e-01	ci right 2.189279e-01	k: 2108	n:10000
OAS1   10000 perm   2 sec   (6197 perm/sec)   p_kst 2.108000e-01   p_cons 3.745000e-01   p_joint 3.269000e-01

Outputting figure to mutsig2_images.part000000000119/OAS1.2_1424_10000_0.2108_0.3745_0.3269.png
                gene_name: OAS1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 83 percent done.
OCIAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.473563e-02	ci left: 7.062425e-01	ci right 7.240320e-01	k: 7152	n:10000
KS ci ratio: 1.233967e-02	ci left: 9.041181e-01	ci right 9.154419e-01	k: 9099	n:10000
OCIAD1   10000 perm   1 sec   (6979 perm/sec)   p_kst 9.099000e-01   p_cons 7.152000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OCIAD1.2_806_10000_0.9099_0.7152_1.png
                gene_name: OCIAD1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
OCM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.218113e-02	ci left: 9.062768e-01	ci right 9.174819e-01	k: 9120	n:10000
Cons ci ratio: 5.683687e-03	ci left: 9.765289e-01	ci right 9.821870e-01	k: 9795	n:10000
KS ci ratio: 1.054030e-01	ci left: 1.150598e-01	ci right 1.279615e-01	k: 1214	n:10000
OCM   10000 perm   1 sec   (7000 perm/sec)   p_kst 1.214000e-01   p_cons 9.795000e-01   p_joint 9.120000e-01

Joint ci ratio: 4.481498e-02	ci left: 2.704581e-01	ci right 2.829069e-01	k: 5533	n:20000
Cons ci ratio: 4.073929e-03	ci left: 9.768122e-01	ci right 9.808469e-01	k: 19578	n:20000
KS ci ratio: 7.427185e-02	ci left: 1.176911e-01	ci right 1.268191e-01	k: 2444	n:20000
OCM   20000 perm   3 sec   (6199 perm/sec)   p_kst 1.222000e-01   p_cons 9.789000e-01   p_joint 2.766500e-01

Outputting figure to mutsig2_images.part000000000119/OCM.2_346_20000_0.1222_0.9789_0.27665.png
                gene_name: OCM
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 87 percent done.
ODF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.997344e-03	ci left: 9.814524e-01	ci right 9.864599e-01	k: 9841	n:10000
Cons ci ratio: 4.933629e-02	ci left: 3.773383e-01	ci right 3.965276e-01	k: 3869	n:10000
KS ci ratio: 3.878641e-03	ci left: 9.882892e-01	ci right 9.922172e-01	k: 9904	n:10000
ODF3   10000 perm   2 sec   (6237 perm/sec)   p_kst 9.904000e-01   p_cons 3.869000e-01   p_joint 9.841000e-01

Outputting figure to mutsig2_images.part000000000119/ODF3.2_789_10000_0.9904_0.3869_0.9841.png
                gene_name: ODF3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 88 percent done.
ODF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.496038e-02	ci left: 7.025094e-01	ci right 7.203673e-01	k: 7115	n:10000
KS ci ratio: 9.009714e-03	ci left: 9.454415e-01	ci right 9.540941e-01	k: 9499	n:10000
ODF4   10000 perm   2 sec   (6613 perm/sec)   p_kst 9.499000e-01   p_cons 7.115000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000119/ODF4.2_786_10000_0.9499_0.7115_1.png
                gene_name: ODF4
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
OLA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.409237e-03	ci left: 9.852332e-01	ci right 9.896760e-01	k: 9876	n:10000
Cons ci ratio: 1.227943e-02	ci left: 9.049403e-01	ci right 9.162192e-01	k: 9107	n:10000
KS ci ratio: 7.529607e-03	ci left: 9.606854e-01	ci right 9.680409e-01	k: 9645	n:10000
OLA1   10000 perm   2 sec   (6622 perm/sec)   p_kst 9.645000e-01   p_cons 9.107000e-01   p_joint 9.876000e-01

Outputting figure to mutsig2_images.part000000000119/OLA1.2_1231_10000_0.9645_0.9107_0.9876.png
                gene_name: OLA1
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 92 percent done.
OLIG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.486923e-02	ci left: 7.040227e-01	ci right 7.218531e-01	k: 7130	n:10000
Cons ci ratio: 3.866476e-02	ci left: 4.969503e-01	ci right 5.166457e-01	k: 5068	n:10000
KS ci ratio: 4.535527e-02	ci left: 4.177760e-01	ci right 4.372662e-01	k: 4275	n:10000
OLIG3   10000 perm   2 sec   (6042 perm/sec)   p_kst 4.275000e-01   p_cons 5.068000e-01   p_joint 7.130000e-01

Outputting figure to mutsig2_images.part000000000119/OLIG3.2_823_10000_0.4275_0.5068_0.713.png
                gene_name: OLIG3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 94 percent done.
OLR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KS ci ratio: 1.141455e-02	ci left: 9.164670e-01	ci right 9.270857e-01	k: 9219	n:10000
OLR1   10000 perm   2 sec   (6441 perm/sec)   p_kst 9.219000e-01   p_cons 1   p_joint 1

Outputting figure to mutsig2_images.part000000000119/OLR1.2_846_10000_0.9219_1_1.png
                gene_name: OLR1
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 1 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
OMP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.962099e-02	ci left: 6.269838e-01	ci right 6.459367e-01	k: 6365	n:10000
Cons ci ratio: 5.090022e-02	ci left: 3.627141e-01	ci right 3.817604e-01	k: 3722	n:10000
KS ci ratio: 8.552514e-02	ci left: 1.661239e-01	ci right 1.810667e-01	k: 1735	n:10000
OMP   10000 perm   1 sec   (7155 perm/sec)   p_kst 1.735000e-01   p_cons 3.722000e-01   p_joint 6.365000e-01

Outputting figure to mutsig2_images.part000000000119/OMP.2_496_10000_0.1735_0.3722_0.6365.png
                gene_name: OMP
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 98 percent done.
OPA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.916180e-02	ci left: 6.342228e-01	ci right 6.530934e-01	k: 6437	n:10000
Cons ci ratio: 5.205220e-02	ci left: 3.523733e-01	ci right 3.713072e-01	k: 3618	n:10000
KS ci ratio: 2.716754e-02	ci left: 6.662236e-01	ci right 6.846741e-01	k: 6755	n:10000
OPA3   10000 perm   2 sec   (6503 perm/sec)   p_kst 6.755000e-01   p_cons 3.618000e-01   p_joint 6.437000e-01

Outputting figure to mutsig2_images.part000000000119/OPA3.2_953_10000_0.6755_0.3618_0.6437.png
                gene_name: OPA3
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000119
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 119 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1644>
Subject: Job 9894050: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1644>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000120> was used as the working directory.
Started at Sat Oct  6 00:21:59 2012
Results reported at Sat Oct  6 00:29:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000120.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000120.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 120  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000120.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    488.41 sec.
    Max Memory :      3541 MB
    Max Swap   :      5986 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
120
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 120
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 120: processing genes 10729 - 10818
Calculating significance of each gene.
Using projection method.
10729	OPN3	8.759856e-01
10730	OPN4	5.041740e-01
10731	OPN5	1.961523e-01
10732	OPRD1	7.933886e-01
10733	OPRK1	2.189825e-02
10734	OPRL1	1
10735	OPRM1	1.789162e-01
10736	OPTC	4.070222e-01
10737	OPTN	4.751702e-01
10738	OR10A2	4.084886e-01
10739	OR10A3	2.480119e-02
10740	OR10A4	2.867291e-01
10741	OR10A5	1
10742	OR10A6	3.476546e-02
10743	OR10A7	1
10744	OR10AD1	8.173077e-01
10745	OR10AG1	2.566100e-02
10746	OR10C1	9.422966e-02
10747	OR10G2	7.392414e-01
10748	OR10G3	5.138772e-01
10749	OR10G4	1.046713e-02
10750	OR10G7	4.755216e-02
10751	OR10G8	7.748987e-01
10752	OR10G9	9.316889e-04
10753	OR10H1	2.615851e-02
10754	OR10H2	4.740039e-02
10755	OR10H3	1
10756	OR10H4	3.014228e-01
10757	OR10H5	8.747595e-02
10758	OR10J1	3.879603e-02
10759	OR10J3	1.847495e-02
10760	OR10J5	1.196478e-01
10761	OR10K1	4.800823e-01
10762	OR10K2	1.199029e-01
10763	OR10P1	3.327509e-01
10764	OR10Q1	4.631632e-01
10765	OR10R2	4.015876e-01
10766	OR10S1	2.634983e-03
10767	OR10T2	1.180127e-01
10768	OR10V1	4.650743e-01
10769	OR10W1	2.361203e-02
10770	OR10X1	1.629180e-02
10771	OR10Z1	3.865490e-02
10772	OR11A1	1
10773	OR11G2	4.695493e-01
10774	OR11H1	3.683599e-01
10775	OR11H12	3.910730e-01
10776	OR11H4	3.453454e-01
10777	OR11H6	6.767425e-02
10778	OR11L1	1.809536e-02
10779	OR12D2	1.182932e-01
10780	OR12D3	3.156979e-02
10781	OR13A1	2.831930e-01
10782	OR13C2	5.746987e-01
10783	OR13C3	2.631411e-03
10784	OR13C4	5.706518e-01
10785	OR13C5	2.858664e-01
10786	OR13C8	4.898274e-02
10787	OR13C9	1.472938e-03
10788	OR13D1	4.743588e-01
10789	OR13F1	9.244794e-03
10790	OR13G1	2.274098e-01
10791	OR13H1	4.354146e-01
10792	OR13J1	7.394587e-01
10793	OR14A16	2.797606e-01
10794	OR14C36	2.879611e-02
10795	OR14I1	1.872697e-01
10796	OR14J1	4.186393e-01
10797	OR1A1	5.641920e-02
10798	OR1A2	4.711049e-01
10799	OR1B1	2.041166e-01
10800	OR1C1	1.107012e-01
10801	OR1D2	1
10802	OR1D4	1
10803	OR1D5	1
10804	OR1E1	4.774086e-01
10805	OR1E2	5.333994e-01
10806	OR1F1	3.617060e-01
10807	OR1G1	3.543812e-01
10808	OR1I1	6.519150e-01
10809	OR1J1	1.330855e-01
10810	OR1J2	5.247176e-01
10811	OR1J4	1.869946e-01
10812	OR1K1	2.082936e-02
10813	OR1L1	2.400339e-01
10814	OR1L3	7.625412e-01
10815	OR1L4	5.349217e-01
10816	OR1L6	7.741961e-02
10817	OR1L8	7.034646e-02
10818	OR1M1	8.599277e-01
Done

Running MutSig 2:
Scatter job 120: processing genes 10729 - 10818
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OR10A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.304220e-02	ci left: 4.435078e-01	ci right 4.631194e-01	k: 4533	n:10000
Cons ci ratio: 7.764659e-02	ci left: 1.951537e-01	ci right 2.110196e-01	k: 2030	n:10000
KS ci ratio: 2.309032e-02	ci left: 7.337090e-01	ci right 7.509496e-01	k: 7424	n:10000
OR10A6   10000 perm   2 sec   (5040 perm/sec)   p_kst 7.424000e-01   p_cons 2.030000e-01   p_joint 4.533000e-01

Outputting figure to mutsig2_images.part000000000120/OR10A6.8_949_10000_0.7424_0.203_0.4533.png
                gene_name: OR10A6
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 1 percent done.
OR10S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.728142e-02	ci left: 5.151564e-01	ci right 5.348291e-01	k: 5250	n:10000
Cons ci ratio: 1.320071e-02	ci left: 8.921069e-01	ci right 9.040601e-01	k: 8982	n:10000
KS ci ratio: 5.370375e-02	ci left: 3.381626e-01	ci right 3.569262e-01	k: 3475	n:10000
OR10S1   10000 perm   2 sec   (5634 perm/sec)   p_kst 3.475000e-01   p_cons 8.982000e-01   p_joint 5.250000e-01

Outputting figure to mutsig2_images.part000000000120/OR10S1.7_1000_10000_0.3475_0.8982_0.525.png
                gene_name: OR10S1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 3 percent done.
OR10G9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.639033e-02	ci left: 2.498415e-01	ci right 2.670994e-01	k: 2584	n:10000
Cons ci ratio: 4.850438e-02	ci left: 3.854004e-01	ci right 4.046607e-01	k: 3950	n:10000
KS ci ratio: 8.467069e-02	ci left: 1.689744e-01	ci right 1.840145e-01	k: 1764	n:10000
OR10G9   10000 perm   2 sec   (5816 perm/sec)   p_kst 1.764000e-01   p_cons 3.950000e-01   p_joint 2.584000e-01

Outputting figure to mutsig2_images.part000000000120/OR10G9.6_940_10000_0.1764_0.395_0.2584.png
                gene_name: OR10G9
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 4 percent done.
OR10J3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.709095e-02	ci left: 8.329712e-01	ci right 8.474300e-01	k: 8403	n:10000
KS ci ratio: 2.106725e-02	ci left: 7.675975e-01	ci right 7.840416e-01	k: 7759	n:10000
OR10J3   10000 perm   2 sec   (4924 perm/sec)   p_kst 7.759000e-01   p_cons 8.403000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR10J3.6_994_10000_0.7759_0.8403_1.png
                gene_name: OR10J3
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
OR11H6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.902211e-02	ci left: 6.364352e-01	ci right 6.552797e-01	k: 6459	n:10000
Cons ci ratio: 3.440563e-02	ci left: 5.550151e-01	ci right 5.745471e-01	k: 5648	n:10000
KS ci ratio: 3.841039e-02	ci left: 5.002504e-01	ci right 5.199437e-01	k: 5101	n:10000
OR11H6   10000 perm   2 sec   (5467 perm/sec)   p_kst 5.101000e-01   p_cons 5.648000e-01   p_joint 6.459000e-01

Outputting figure to mutsig2_images.part000000000120/OR11H6.6_997_10000_0.5101_0.5648_0.6459.png
                gene_name: OR11H6
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 7 percent done.
OR13C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.686127e-02	ci left: 8.366363e-01	ci right 8.509628e-01	k: 8439	n:10000
KS ci ratio: 2.081274e-02	ci left: 7.718513e-01	ci right 7.881853e-01	k: 7801	n:10000
OR13C3   10000 perm   2 sec   (5035 perm/sec)   p_kst 7.801000e-01   p_cons 8.439000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR13C3.6_1048_10000_0.7801_0.8439_1.png
                gene_name: OR13C3
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
OPRK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.552242e-02	ci left: 4.159818e-01	ci right 4.354615e-01	k: 4257	n:10000
Cons ci ratio: 2.395411e-02	ci left: 7.192638e-01	ci right 7.368032e-01	k: 7281	n:10000
KS ci ratio: 5.640311e-02	ci left: 3.164175e-01	ci right 3.348842e-01	k: 3256	n:10000
OPRK1   10000 perm   2 sec   (5311 perm/sec)   p_kst 3.256000e-01   p_cons 7.281000e-01   p_joint 4.257000e-01

Outputting figure to mutsig2_images.part000000000120/OPRK1.5_1155_10000_0.3256_0.7281_0.4257.png
                gene_name: OPRK1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 10 percent done.
OR10A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.398202e-02	ci left: 2.110256e-01	ci right 2.273383e-01	k: 2191	n:10000
Cons ci ratio: 7.400364e-02	ci left: 2.109269e-01	ci right 2.272370e-01	k: 2190	n:10000
KS ci ratio: 8.889150e-02	ci left: 1.555149e-01	ci right 1.700821e-01	k: 1627	n:10000
OR10A3   10000 perm   2 sec   (6302 perm/sec)   p_kst 1.627000e-01   p_cons 2.190000e-01   p_joint 2.191000e-01

Outputting figure to mutsig2_images.part000000000120/OR10A3.5_949_10000_0.1627_0.219_0.2191.png
                gene_name: OR10A3
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 12 percent done.
OR10G4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.413521e-02	ci left: 4.311373e-01	ci right 4.506972e-01	k: 4409	n:10000
Cons ci ratio: 6.952695e-02	ci left: 2.327426e-01	ci right 2.496084e-01	k: 2411	n:10000
KS ci ratio: 2.108542e-02	ci left: 7.672937e-01	ci right 7.837455e-01	k: 7756	n:10000
OR10G4   10000 perm   2 sec   (5879 perm/sec)   p_kst 7.756000e-01   p_cons 2.411000e-01   p_joint 4.409000e-01

Outputting figure to mutsig2_images.part000000000120/OR10G4.5_940_10000_0.7756_0.2411_0.4409.png
                gene_name: OR10G4
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 13 percent done.
OR10H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.070356e-02	ci left: 7.736747e-01	ci right 7.899608e-01	k: 7819	n:10000
KS ci ratio: 6.415632e-03	ci left: 9.706895e-01	ci right 9.770303e-01	k: 9740	n:10000
OR10H1   10000 perm   2 sec   (5696 perm/sec)   p_kst 9.740000e-01   p_cons 7.819000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR10H1.5_961_10000_0.974_0.7819_1.png
                gene_name: OR10H1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
OR10J1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.711004e-02	ci left: 8.326658e-01	ci right 8.471356e-01	k: 8400	n:10000
Cons ci ratio: 2.941013e-02	ci left: 6.303014e-01	ci right 6.492171e-01	k: 6398	n:10000
KS ci ratio: 2.468101e-02	ci left: 7.071507e-01	ci right 7.249233e-01	k: 7161	n:10000
OR10J1   10000 perm   2 sec   (5603 perm/sec)   p_kst 7.161000e-01   p_cons 6.398000e-01   p_joint 8.400000e-01

Outputting figure to mutsig2_images.part000000000120/OR10J1.5_967_10000_0.7161_0.6398_0.84.png
                gene_name: OR10J1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 16 percent done.
OR10X1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.293953e-02	ci left: 8.957999e-01	ci right 9.075649e-01	k: 9018	n:10000
Cons ci ratio: 3.662888e-02	ci left: 5.239639e-01	ci right 5.436164e-01	k: 5338	n:10000
KS ci ratio: 2.263779e-02	ci left: 7.412900e-01	ci right 7.583643e-01	k: 7499	n:10000
OR10X1   10000 perm   2 sec   (5523 perm/sec)   p_kst 7.499000e-01   p_cons 5.338000e-01   p_joint 9.018000e-01

Outputting figure to mutsig2_images.part000000000120/OR10X1.5_985_10000_0.7499_0.5338_0.9018.png
                gene_name: OR10X1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 18 percent done.
OR10Z1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.245679e-02	ci left: 7.443233e-01	ci right 7.613292e-01	k: 7529	n:10000
Cons ci ratio: 4.466723e-02	ci left: 4.252535e-01	ci right 4.447844e-01	k: 4350	n:10000
KS ci ratio: 2.701897e-02	ci left: 6.686406e-01	ci right 6.870556e-01	k: 6779	n:10000
OR10Z1   10000 perm   2 sec   (6236 perm/sec)   p_kst 6.779000e-01   p_cons 4.350000e-01   p_joint 7.529000e-01

Outputting figure to mutsig2_images.part000000000120/OR10Z1.5_946_10000_0.6779_0.435_0.7529.png
                gene_name: OR10Z1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 19 percent done.
OR13C9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.323762e-02	ci left: 5.719593e-01	ci right 5.913931e-01	k: 5817	n:10000
Cons ci ratio: 2.281275e-02	ci left: 7.383583e-01	ci right 7.554977e-01	k: 7470	n:10000
KS ci ratio: 4.957627e-02	ci left: 3.750495e-01	ci right 3.942177e-01	k: 3846	n:10000
OR13C9   10000 perm   2 sec   (6326 perm/sec)   p_kst 3.846000e-01   p_cons 7.470000e-01   p_joint 5.817000e-01

Outputting figure to mutsig2_images.part000000000120/OR13C9.5_961_10000_0.3846_0.747_0.5817.png
                gene_name: OR13C9
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 21 percent done.
OR1K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.375245e-02	ci left: 5.644382e-01	ci right 5.839185e-01	k: 5742	n:10000
Cons ci ratio: 5.016777e-02	ci left: 3.694779e-01	ci right 3.885927e-01	k: 3790	n:10000
KS ci ratio: 5.232375e-02	ci left: 3.499877e-01	ci right 3.688943e-01	k: 3594	n:10000
OR1K1   10000 perm   2 sec   (6078 perm/sec)   p_kst 3.594000e-01   p_cons 3.790000e-01   p_joint 5.742000e-01

Outputting figure to mutsig2_images.part000000000120/OR1K1.5_955_10000_0.3594_0.379_0.5742.png
                gene_name: OR1K1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 22 percent done.
OPTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.757094e-02	ci left: 2.432172e-01	ci right 2.603276e-01	k: 2517	n:10000
Cons ci ratio: 8.935079e-02	ci left: 1.541405e-01	ci right 1.686573e-01	k: 1613	n:10000
KS ci ratio: 4.689887e-02	ci left: 4.015330e-01	ci right 4.209187e-01	k: 4112	n:10000
OPTN   10000 perm   2 sec   (5101 perm/sec)   p_kst 4.112000e-01   p_cons 1.613000e-01   p_joint 2.517000e-01

Outputting figure to mutsig2_images.part000000000120/OPTN.4_1786_10000_0.4112_0.1613_0.2517.png
                gene_name: OPTN
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 24 percent done.
OR10AG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.004673e-02	ci left: 7.846201e-01	ci right 8.006090e-01	k: 7927	n:10000
Cons ci ratio: 3.202320e-02	ci left: 5.900191e-01	ci right 6.093228e-01	k: 5997	n:10000
KS ci ratio: 3.003189e-02	ci left: 6.205509e-01	ci right 6.395732e-01	k: 6301	n:10000
OR10AG1   10000 perm   2 sec   (6340 perm/sec)   p_kst 6.301000e-01   p_cons 5.997000e-01   p_joint 7.927000e-01

Outputting figure to mutsig2_images.part000000000120/OR10AG1.4_910_10000_0.6301_0.5997_0.7927.png
                gene_name: OR10AG1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 25 percent done.
OR10H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.869607e-02	ci left: 8.069435e-01	ci right 8.222728e-01	k: 8147	n:10000
KS ci ratio: 1.528263e-02	ci left: 8.613106e-01	ci right 8.746743e-01	k: 8681	n:10000
OR10H2   10000 perm   2 sec   (6356 perm/sec)   p_kst 8.681000e-01   p_cons 8.147000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR10H2.4_952_10000_0.8681_0.8147_1.png
                gene_name: OR10H2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
OR10T2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.481661e-02	ci left: 1.684829e-01	ci right 1.835063e-01	k: 1759	n:10000
Cons ci ratio: 1.601820e-01	ci left: 5.195823e-02	ci right 6.110226e-02	k: 564	n:10000
KS ci ratio: 9.909943e-03	ci left: 9.351657e-01	ci right 9.445760e-01	k: 9400	n:10000
OR10T2   10000 perm   2 sec   (6357 perm/sec)   p_kst 9.400000e-01   p_cons 5.640000e-02   p_joint 1.759000e-01

Joint ci ratio: 6.849977e-02	ci left: 1.358592e-01	ci right 1.455455e-01	k: 2813	n:20000
Cons ci ratio: 1.116540e-01	ci left: 5.479998e-02	ci right 6.132925e-02	k: 1160	n:20000
KS ci ratio: 7.073193e-03	ci left: 9.354913e-01	ci right 9.421804e-01	k: 18778	n:20000
OR10T2   20000 perm   4 sec   (5661 perm/sec)   p_kst 9.389000e-01   p_cons 5.800000e-02   p_joint 1.406500e-01

Joint ci ratio: 4.935598e-02	ci left: 1.694281e-01	ci right 1.780352e-01	k: 5211	n:30000
Cons ci ratio: 9.512983e-02	ci left: 5.101286e-02	ci right 5.614069e-02	k: 1606	n:30000
KS ci ratio: 5.784701e-03	ci left: 9.359261e-01	ci right 9.413885e-01	k: 28161	n:30000
OR10T2   30000 perm   6 sec   (5345 perm/sec)   p_kst 9.387000e-01   p_cons 5.353333e-02   p_joint 1.737000e-01

Outputting figure to mutsig2_images.part000000000120/OR10T2.4_949_30000_0.9387_0.053533_0.1737.png
                gene_name: OR10T2
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 28 percent done.
OR11L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.709916e-02	ci left: 1.974200e-01	ci right 2.133520e-01	k: 2053	n:10000
Cons ci ratio: 6.526634e-02	ci left: 2.563695e-01	ci right 2.737676e-01	k: 2650	n:10000
KS ci ratio: 1.050588e-01	ci left: 1.157438e-01	ci right 1.286772e-01	k: 1221	n:10000
OR11L1   10000 perm   2 sec   (6069 perm/sec)   p_kst 1.221000e-01   p_cons 2.650000e-01   p_joint 2.053000e-01

Joint ci ratio: 5.552325e-02	ci left: 1.939311e-01	ci right 2.050564e-01	k: 3989	n:20000
Cons ci ratio: 4.627528e-02	ci left: 2.579006e-01	ci right 2.701681e-01	k: 5280	n:20000
KS ci ratio: 7.449765e-02	ci left: 1.170516e-01	ci right 1.261587e-01	k: 2431	n:20000
OR11L1   20000 perm   4 sec   (5388 perm/sec)   p_kst 1.215500e-01   p_cons 2.640000e-01   p_joint 1.994500e-01

Outputting figure to mutsig2_images.part000000000120/OR11L1.4_973_20000_0.12155_0.264_0.19945.png
                gene_name: OR11L1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 29 percent done.
OR12D3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.463247e-02	ci left: 7.079580e-01	ci right 7.257155e-01	k: 7169	n:10000
Cons ci ratio: 2.391782e-02	ci left: 7.198696e-01	ci right 7.373970e-01	k: 7287	n:10000
KS ci ratio: 4.354051e-02	ci left: 4.378206e-01	ci right 4.574099e-01	k: 4476	n:10000
OR12D3   10000 perm   2 sec   (6275 perm/sec)   p_kst 4.476000e-01   p_cons 7.287000e-01   p_joint 7.169000e-01

Outputting figure to mutsig2_images.part000000000120/OR12D3.4_955_10000_0.4476_0.7287_0.7169.png
                gene_name: OR12D3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 31 percent done.
OR13C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.106031e-03	ci left: 9.732324e-01	ci right 9.792858e-01	k: 9764	n:10000
KS ci ratio: 5.584290e-03	ci left: 9.772755e-01	ci right 9.828399e-01	k: 9802	n:10000
OR13C2   10000 perm   1 sec   (6781 perm/sec)   p_kst 9.802000e-01   p_cons 9.764000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR13C2.4_961_10000_0.9802_0.9764_1.png
                gene_name: OR13C2
               theta_stop: 0.0061 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
OR13C8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.174575e-02	ci left: 4.586800e-01	ci right 4.783383e-01	k: 4685	n:10000
Cons ci ratio: 7.204855e-02	ci left: 2.201034e-01	ci right 2.366552e-01	k: 2283	n:10000
KS ci ratio: 1.417551e-02	ci left: 8.779709e-01	ci right 8.906043e-01	k: 8844	n:10000
OR13C8   10000 perm   1 sec   (6768 perm/sec)   p_kst 8.844000e-01   p_cons 2.283000e-01   p_joint 4.685000e-01

Outputting figure to mutsig2_images.part000000000120/OR13C8.4_967_10000_0.8844_0.2283_0.4685.png
                gene_name: OR13C8
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 34 percent done.
OR13F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.635020e-02	ci left: 5.277682e-01	ci right 5.474099e-01	k: 5376	n:10000
Cons ci ratio: 5.078065e-02	ci left: 3.638081e-01	ci right 3.828658e-01	k: 3733	n:10000
KS ci ratio: 3.195656e-02	ci left: 5.910228e-01	ci right 6.103185e-01	k: 6007	n:10000
OR13F1   10000 perm   2 sec   (5435 perm/sec)   p_kst 6.007000e-01   p_cons 3.733000e-01   p_joint 5.376000e-01

Outputting figure to mutsig2_images.part000000000120/OR13F1.4_964_10000_0.6007_0.3733_0.5376.png
                gene_name: OR13F1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 35 percent done.
OR1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.411193e-02	ci left: 2.104338e-01	ci right 2.267305e-01	k: 2185	n:10000
Cons ci ratio: 7.014019e-02	ci left: 2.295818e-01	ci right 2.463711e-01	k: 2379	n:10000
KS ci ratio: 8.007830e-02	ci left: 1.855021e-01	ci right 2.010770e-01	k: 1932	n:10000
OR1A1   10000 perm   2 sec   (5183 perm/sec)   p_kst 1.932000e-01   p_cons 2.379000e-01   p_joint 2.185000e-01

Outputting figure to mutsig2_images.part000000000120/OR1A1.4_932_10000_0.1932_0.2379_0.2185.png
                gene_name: OR1A1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 37 percent done.
OR1L6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.609790e-02	ci left: 2.016579e-01	ci right 2.177115e-01	k: 2096	n:10000
Cons ci ratio: 6.152973e-02	ci left: 2.797318e-01	ci right 2.975915e-01	k: 2886	n:10000
KS ci ratio: 1.440974e-01	ci left: 6.391519e-02	ci right 7.393770e-02	k: 688	n:10000
OR1L6   10000 perm   2 sec   (6235 perm/sec)   p_kst 6.880000e-02   p_cons 2.886000e-01   p_joint 2.096000e-01

Joint ci ratio: 6.831624e-02	ci left: 1.364999e-01	ci right 1.462047e-01	k: 2826	n:20000
Cons ci ratio: 4.388738e-02	ci left: 2.788498e-01	ci right 2.914128e-01	k: 5702	n:20000
KS ci ratio: 1.032282e-01	ci left: 6.376824e-02	ci right 7.075821e-02	k: 1344	n:20000
OR1L6   20000 perm   4 sec   (5559 perm/sec)   p_kst 6.720000e-02   p_cons 2.851000e-01   p_joint 1.413000e-01

Joint ci ratio: 6.326062e-02	ci left: 1.098657e-01	ci right 1.170760e-01	k: 3403	n:30000
Cons ci ratio: 3.572440e-02	ci left: 2.812554e-01	ci right 2.915193e-01	k: 8591	n:30000
KS ci ratio: 8.391874e-02	ci left: 6.494777e-02	ci right 7.066961e-02	k: 2033	n:30000
OR1L6   30000 perm   6 sec   (5318 perm/sec)   p_kst 6.776667e-02   p_cons 2.863667e-01   p_joint 1.134333e-01

Outputting figure to mutsig2_images.part000000000120/OR1L6.4_938_30000_0.067767_0.28637_0.11343.png
                gene_name: OR1L6
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 38 percent done.
OR1L8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.213668e-02	ci left: 5.883129e-01	ci right 6.076300e-01	k: 5980	n:10000
Cons ci ratio: 1.985756e-02	ci left: 7.877635e-01	ci right 8.036639e-01	k: 7958	n:10000
KS ci ratio: 4.835253e-02	ci left: 3.868937e-01	ci right 4.061666e-01	k: 3965	n:10000
OR1L8   10000 perm   2 sec   (6135 perm/sec)   p_kst 3.965000e-01   p_cons 7.958000e-01   p_joint 5.980000e-01

Outputting figure to mutsig2_images.part000000000120/OR1L8.4_934_10000_0.3965_0.7958_0.598.png
                gene_name: OR1L8
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 40 percent done.
OPN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.691824e-02	ci left: 4.013338e-01	ci right 4.207181e-01	k: 4110	n:10000
Cons ci ratio: 3.369728e-02	ci left: 5.652404e-01	ci right 5.847159e-01	k: 5750	n:10000
KS ci ratio: 5.444600e-02	ci left: 3.320042e-01	ci right 3.506883e-01	k: 3413	n:10000
OPN4   10000 perm   2 sec   (5595 perm/sec)   p_kst 3.413000e-01   p_cons 5.750000e-01   p_joint 4.110000e-01

Outputting figure to mutsig2_images.part000000000120/OPN4.3_1514_10000_0.3413_0.575_0.411.png
                gene_name: OPN4
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 41 percent done.
OPN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.890957e-01	ci left: 3.729324e-02	ci right 4.517686e-02	k: 411	n:10000
Cons ci ratio: 1.917816e-01	ci left: 3.624378e-02	ci right 4.402702e-02	k: 400	n:10000
KS ci ratio: 2.108706e-01	ci left: 2.986994e-02	ci right 3.700523e-02	k: 333	n:10000
OPN5   10000 perm   2 sec   (6214 perm/sec)   p_kst 3.330000e-02   p_cons 4.000000e-02   p_joint 4.110000e-02

Joint ci ratio: 1.351748e-01	ci left: 3.761647e-02	ci right 4.311819e-02	k: 806	n:20000
Cons ci ratio: 1.324614e-01	ci left: 3.916497e-02	ci right 4.476918e-02	k: 838	n:20000
KS ci ratio: 1.406204e-01	ci left: 3.476452e-02	ci right 4.007106e-02	k: 747	n:20000
OPN5   20000 perm   4 sec   (5425 perm/sec)   p_kst 3.735000e-02   p_cons 4.190000e-02   p_joint 4.030000e-02

Joint ci ratio: 1.197851e-01	ci left: 3.239853e-02	ci right 3.655893e-02	k: 1033	n:30000
Cons ci ratio: 1.083124e-01	ci left: 3.956314e-02	ci right 4.412613e-02	k: 1254	n:30000
KS ci ratio: 1.157852e-01	ci left: 3.466545e-02	ci right 3.895819e-02	k: 1103	n:30000
OPN5   30000 perm   6 sec   (5123 perm/sec)   p_kst 3.676667e-02   p_cons 4.180000e-02   p_joint 3.443333e-02

Joint ci ratio: 1.040373e-01	ci left: 3.248908e-02	ci right 3.607895e-02	k: 1370	n:40000
Cons ci ratio: 9.235189e-02	ci left: 4.110612e-02	ci right 4.511056e-02	k: 1723	n:40000
KS ci ratio: 1.005574e-01	ci left: 3.475662e-02	ci right 3.846104e-02	k: 1463	n:40000
OPN5   40000 perm   8 sec   (4971 perm/sec)   p_kst 3.657500e-02   p_cons 4.307500e-02   p_joint 3.425000e-02

Joint ci ratio: 1.060888e-01	ci left: 2.516815e-02	ci right 2.800718e-02	k: 1328	n:50000
Cons ci ratio: 8.304620e-02	ci left: 4.088564e-02	ci right 4.444771e-02	k: 2132	n:50000
KS ci ratio: 9.050765e-02	ci left: 3.452105e-02	ci right 3.781309e-02	k: 1807	n:50000
OPN5   50000 perm   10 sec   (4885 perm/sec)   p_kst 3.614000e-02   p_cons 4.264000e-02   p_joint 2.656000e-02

Joint ci ratio: 8.560596e-02	ci left: 3.231930e-02	ci right 3.522602e-02	k: 2025	n:60000
Cons ci ratio: 7.591287e-02	ci left: 4.093243e-02	ci right 4.417867e-02	k: 2552	n:60000
KS ci ratio: 8.263379e-02	ci left: 3.465421e-02	ci right 3.765754e-02	k: 2168	n:60000
OPN5   60000 perm   13 sec   (4793 perm/sec)   p_kst 3.613333e-02   p_cons 4.253333e-02   p_joint 3.375000e-02

Outputting figure to mutsig2_images.part000000000120/OPN5.3_1093_60000_0.036133_0.042533_0.03375.png
                gene_name: OPN5
               theta_stop: 0.086 
                    nperm: 60000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.035 

Current progress: 43 percent done.
OPRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.276264e-01	ci left: 8.067319e-02	ci right 9.176924e-02	k: 861	n:10000
Cons ci ratio: 9.747717e-02	ci left: 1.323733e-01	ci right 1.460376e-01	k: 1391	n:10000
KS ci ratio: 1.062509e-01	ci left: 1.133992e-01	ci right 1.262232e-01	k: 1197	n:10000
OPRM1   10000 perm   2 sec   (5948 perm/sec)   p_kst 1.197000e-01   p_cons 1.391000e-01   p_joint 8.610000e-02

Joint ci ratio: 7.649875e-02	ci left: 1.115930e-01	ci right 1.205189e-01	k: 2320	n:20000
Cons ci ratio: 6.989336e-02	ci left: 1.311297e-01	ci right 1.406765e-01	k: 2717	n:20000
KS ci ratio: 7.568944e-02	ci left: 1.137564e-01	ci right 1.227549e-01	k: 2364	n:20000
OPRM1   20000 perm   4 sec   (5275 perm/sec)   p_kst 1.182000e-01   p_cons 1.358500e-01   p_joint 1.160000e-01

Outputting figure to mutsig2_images.part000000000120/OPRM1.3_2106_20000_0.1182_0.13585_0.116.png
                gene_name: OPRM1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 44 percent done.
OPTC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.122849e-02	ci left: 3.597307e-01	ci right 3.787456e-01	k: 3692	n:10000
Cons ci ratio: 5.967958e-02	ci left: 2.923162e-01	ci right 3.103997e-01	k: 3013	n:10000
KS ci ratio: 6.193667e-02	ci left: 2.770574e-01	ci right 2.948674e-01	k: 2859	n:10000
OPTC   10000 perm   2 sec   (5095 perm/sec)   p_kst 2.859000e-01   p_cons 3.013000e-01   p_joint 3.692000e-01

Outputting figure to mutsig2_images.part000000000120/OPTC.3_1023_10000_0.2859_0.3013_0.3692.png
                gene_name: OPTC
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 46 percent done.
OR10A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.420826e-02	ci left: 7.150233e-01	ci right 7.326461e-01	k: 7239	n:10000
Cons ci ratio: 4.606649e-02	ci left: 4.102013e-01	ci right 4.296454e-01	k: 4199	n:10000
KS ci ratio: 3.054934e-02	ci left: 6.125124e-01	ci right 6.316164e-01	k: 6221	n:10000
OR10A2   10000 perm   2 sec   (6448 perm/sec)   p_kst 6.221000e-01   p_cons 4.199000e-01   p_joint 7.239000e-01

Outputting figure to mutsig2_images.part000000000120/OR10A2.3_916_10000_0.6221_0.4199_0.7239.png
                gene_name: OR10A2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 47 percent done.
OR10C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.388992e-02	ci left: 8.821675e-01	ci right 8.946052e-01	k: 8885	n:10000
Cons ci ratio: 3.005765e-02	ci left: 6.201489e-01	ci right 6.391755e-01	k: 6297	n:10000
KS ci ratio: 3.389067e-02	ci left: 5.624330e-01	ci right 5.819249e-01	k: 5722	n:10000
OR10C1   10000 perm   2 sec   (6546 perm/sec)   p_kst 5.722000e-01   p_cons 6.297000e-01   p_joint 8.885000e-01

Outputting figure to mutsig2_images.part000000000120/OR10C1.3_943_10000_0.5722_0.6297_0.8885.png
                gene_name: OR10C1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 49 percent done.
OR10G7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.338610e-02	ci left: 7.287579e-01	ci right 7.461036e-01	k: 7375	n:10000
Cons ci ratio: 5.768586e-02	ci left: 3.066941e-01	ci right 3.250132e-01	k: 3158	n:10000
KS ci ratio: 4.419792e-02	ci left: 4.304391e-01	ci right 4.499957e-01	k: 4402	n:10000
OR10G7   10000 perm   2 sec   (6310 perm/sec)   p_kst 4.402000e-01   p_cons 3.158000e-01   p_joint 7.375000e-01

Outputting figure to mutsig2_images.part000000000120/OR10G7.3_940_10000_0.4402_0.3158_0.7375.png
                gene_name: OR10G7
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 50 percent done.
OR10H4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.396621e-02	ci left: 7.190618e-01	ci right 7.366053e-01	k: 7279	n:10000
KS ci ratio: 7.239686e-03	ci left: 9.634151e-01	ci right 9.705095e-01	k: 9671	n:10000
OR10H4   10000 perm   2 sec   (5780 perm/sec)   p_kst 9.671000e-01   p_cons 7.279000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR10H4.3_955_10000_0.9671_0.7279_1.png
                gene_name: OR10H4
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
OR10H5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.405707e-02	ci left: 5.600270e-01	ci right 5.795323e-01	k: 5698	n:10000
Cons ci ratio: 4.286896e-02	ci left: 4.455036e-01	ci right 4.651224e-01	k: 4553	n:10000
KS ci ratio: 4.927397e-02	ci left: 3.779354e-01	ci right 3.971302e-01	k: 3875	n:10000
OR10H5   10000 perm   2 sec   (6026 perm/sec)   p_kst 3.875000e-01   p_cons 4.553000e-01   p_joint 5.698000e-01

Outputting figure to mutsig2_images.part000000000120/OR10H5.3_952_10000_0.3875_0.4553_0.5698.png
                gene_name: OR10H5
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 53 percent done.
OR10J5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.145934e-02	ci left: 5.985520e-01	ci right 6.177849e-01	k: 6082	n:10000
Cons ci ratio: 6.247168e-02	ci left: 2.735913e-01	ci right 2.913356e-01	k: 2824	n:10000
KS ci ratio: 1.928796e-02	ci left: 7.971977e-01	ci right 8.128242e-01	k: 8051	n:10000
OR10J5   10000 perm   2 sec   (6237 perm/sec)   p_kst 8.051000e-01   p_cons 2.824000e-01   p_joint 6.082000e-01

Outputting figure to mutsig2_images.part000000000120/OR10J5.3_934_10000_0.8051_0.2824_0.6082.png
                gene_name: OR10J5
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 54 percent done.
OR10W1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.196701e-02	ci left: 2.768594e-01	ci right 2.946656e-01	k: 2857	n:10000
Cons ci ratio: 2.460821e-02	ci left: 7.083616e-01	ci right 7.261116e-01	k: 7173	n:10000
KS ci ratio: 1.185861e-01	ci left: 9.262972e-02	ci right 1.044053e-01	k: 984	n:10000
OR10W1   10000 perm   2 sec   (6634 perm/sec)   p_kst 9.840000e-02   p_cons 7.173000e-01   p_joint 2.857000e-01

Joint ci ratio: 4.243665e-02	ci left: 2.926596e-01	ci right 3.053988e-01	k: 5980	n:20000
Cons ci ratio: 1.744176e-02	ci left: 7.100466e-01	ci right 7.225904e-01	k: 14327	n:20000
KS ci ratio: 8.433034e-02	ci left: 9.337356e-02	ci right 1.016439e-01	k: 1949	n:20000
OR10W1   20000 perm   3 sec   (5842 perm/sec)   p_kst 9.745000e-02   p_cons 7.163500e-01   p_joint 2.990000e-01

Outputting figure to mutsig2_images.part000000000120/OR10W1.2_922_20000_0.09745_0.71635_0.299.png
                gene_name: OR10W1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 56 percent done.
OR11H4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.912193e-02	ci left: 7.999380e-01	ci right 8.154824e-01	k: 8078	n:10000
Cons ci ratio: 1.518244e-02	ci left: 8.628422e-01	ci right 8.761417e-01	k: 8696	n:10000
KS ci ratio: 2.872461e-02	ci left: 6.411625e-01	ci right 6.599498e-01	k: 6506	n:10000
OR11H4   10000 perm   2 sec   (6249 perm/sec)   p_kst 6.506000e-01   p_cons 8.696000e-01   p_joint 8.078000e-01

Outputting figure to mutsig2_images.part000000000120/OR11H4.3_979_10000_0.6506_0.8696_0.8078.png
                gene_name: OR11H4
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 57 percent done.
OR12D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.194382e-02	ci left: 7.529207e-01	ci right 7.697268e-01	k: 7614	n:10000
KS ci ratio: 1.449229e-02	ci left: 8.732655e-01	ci right 8.861124e-01	k: 8798	n:10000
OR12D2   10000 perm   2 sec   (6200 perm/sec)   p_kst 8.798000e-01   p_cons 7.614000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR12D2.3_928_10000_0.8798_0.7614_1.png
                gene_name: OR12D2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
OR13A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.240530e-02	ci left: 4.508931e-01	ci right 4.705298e-01	k: 4607	n:10000
Cons ci ratio: 4.220959e-02	ci left: 4.531890e-01	ci right 4.728325e-01	k: 4630	n:10000
KS ci ratio: 5.096562e-02	ci left: 3.621174e-01	ci right 3.811575e-01	k: 3716	n:10000
OR13A1   10000 perm   2 sec   (6451 perm/sec)   p_kst 3.716000e-01   p_cons 4.630000e-01   p_joint 4.607000e-01

Outputting figure to mutsig2_images.part000000000120/OR13A1.3_991_10000_0.3716_0.463_0.4607.png
                gene_name: OR13A1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 60 percent done.
OR13G1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.322234e-02	ci left: 8.917993e-01	ci right 9.037679e-01	k: 8979	n:10000
Cons ci ratio: 3.088809e-02	ci left: 6.072889e-01	ci right 6.264430e-01	k: 6169	n:10000
KS ci ratio: 4.533675e-02	ci left: 4.179754e-01	ci right 4.374667e-01	k: 4277	n:10000
OR13G1   10000 perm   2 sec   (6262 perm/sec)   p_kst 4.277000e-01   p_cons 6.169000e-01   p_joint 8.979000e-01

Outputting figure to mutsig2_images.part000000000120/OR13G1.3_928_10000_0.4277_0.6169_0.8979.png
                gene_name: OR13G1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 62 percent done.
OR13H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.497436e-02	ci left: 8.660086e-01	ci right 8.791735e-01	k: 8727	n:10000
Cons ci ratio: 4.623708e-02	ci left: 4.084076e-01	ci right 4.278402e-01	k: 4181	n:10000
KS ci ratio: 1.521587e-02	ci left: 8.623316e-01	ci right 8.756526e-01	k: 8691	n:10000
OR13H1   10000 perm   2 sec   (6349 perm/sec)   p_kst 8.691000e-01   p_cons 4.181000e-01   p_joint 8.727000e-01

Outputting figure to mutsig2_images.part000000000120/OR13H1.3_931_10000_0.8691_0.4181_0.8727.png
                gene_name: OR13H1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 63 percent done.
OR14C36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.652600e-02	ci left: 5.253654e-01	ci right 5.450141e-01	k: 5352	n:10000
Cons ci ratio: 1.892472e-02	ci left: 8.031864e-01	ci right 8.186320e-01	k: 8110	n:10000
KS ci ratio: 5.162669e-02	ci left: 3.561511e-01	ci right 3.751272e-01	k: 3656	n:10000
OR14C36   10000 perm   2 sec   (6352 perm/sec)   p_kst 3.656000e-01   p_cons 8.110000e-01   p_joint 5.352000e-01

Outputting figure to mutsig2_images.part000000000120/OR14C36.3_943_10000_0.3656_0.811_0.5352.png
                gene_name: OR14C36
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 65 percent done.
OR14J1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.890587e-02	ci left: 2.360028e-01	ci right 2.529463e-01	k: 2444	n:10000
Cons ci ratio: 3.060783e-02	ci left: 6.116083e-01	ci right 6.307211e-01	k: 6212	n:10000
KS ci ratio: 1.267434e-01	ci left: 8.174120e-02	ci right 9.290058e-02	k: 872	n:10000
OR14J1   10000 perm   2 sec   (6329 perm/sec)   p_kst 8.720000e-02   p_cons 6.212000e-01   p_joint 2.444000e-01

Joint ci ratio: 5.117161e-02	ci left: 2.210114e-01	ci right 2.326681e-01	k: 4536	n:20000
Cons ci ratio: 2.226262e-02	ci left: 6.010433e-01	ci right 6.146253e-01	k: 12157	n:20000
KS ci ratio: 9.079590e-02	ci left: 8.136634e-02	ci right 8.915473e-02	k: 1704	n:20000
OR14J1   20000 perm   4 sec   (5635 perm/sec)   p_kst 8.520000e-02   p_cons 6.078500e-01   p_joint 2.268000e-01

Outputting figure to mutsig2_images.part000000000120/OR14J1.3_970_20000_0.0852_0.60785_0.2268.png
                gene_name: OR14J1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 66 percent done.
OR1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.448599e-02	ci left: 4.272478e-01	ci right 4.467889e-01	k: 4370	n:10000
Cons ci ratio: 5.100929e-02	ci left: 3.617196e-01	ci right 3.807555e-01	k: 3712	n:10000
KS ci ratio: 6.649439e-02	ci left: 2.492482e-01	ci right 2.664931e-01	k: 2578	n:10000
OR1B1   10000 perm   2 sec   (6544 perm/sec)   p_kst 2.578000e-01   p_cons 3.712000e-01   p_joint 4.370000e-01

Outputting figure to mutsig2_images.part000000000120/OR1B1.3_961_10000_0.2578_0.3712_0.437.png
                gene_name: OR1B1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 68 percent done.
OR1C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.522390e-02	ci left: 1.379571e-01	ci right 1.518505e-01	k: 1448	n:10000
Cons ci ratio: 1.099875e-01	ci left: 1.064680e-01	ci right 1.189587e-01	k: 1126	n:10000
KS ci ratio: 9.564886e-02	ci left: 1.368792e-01	ci right 1.507290e-01	k: 1437	n:10000
OR1C1   10000 perm   2 sec   (5682 perm/sec)   p_kst 1.437000e-01   p_cons 1.126000e-01   p_joint 1.448000e-01

Joint ci ratio: 7.651740e-02	ci left: 1.115439e-01	ci right 1.204681e-01	k: 2319	n:20000
Cons ci ratio: 7.846254e-02	ci left: 1.065799e-01	ci right 1.153335e-01	k: 2218	n:20000
KS ci ratio: 6.809199e-02	ci left: 1.372884e-01	ci right 1.470159e-01	k: 2842	n:20000
OR1C1   20000 perm   4 sec   (5279 perm/sec)   p_kst 1.421000e-01   p_cons 1.109000e-01   p_joint 1.159500e-01

Outputting figure to mutsig2_images.part000000000120/OR1C1.3_949_20000_0.1421_0.1109_0.11595.png
                gene_name: OR1C1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 69 percent done.
OR1J1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.443915e-02	ci left: 2.613165e-01	ci right 2.788176e-01	k: 2700	n:10000
Cons ci ratio: 6.630385e-02	ci left: 2.503360e-01	ci right 2.676047e-01	k: 2589	n:10000
KS ci ratio: 6.265710e-02	ci left: 2.724030e-01	ci right 2.901245e-01	k: 2812	n:10000
OR1J1   10000 perm   2 sec   (6056 perm/sec)   p_kst 2.812000e-01   p_cons 2.589000e-01   p_joint 2.700000e-01

Outputting figure to mutsig2_images.part000000000120/OR1J1.3_973_10000_0.2812_0.2589_0.27.png
                gene_name: OR1J1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 71 percent done.
OR1J4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.724980e-02	ci left: 8.304267e-01	ci right 8.449760e-01	k: 8378	n:10000
KS ci ratio: 2.023559e-02	ci left: 7.814775e-01	ci right 7.975535e-01	k: 7896	n:10000
OR1J4   10000 perm   2 sec   (6196 perm/sec)   p_kst 7.896000e-01   p_cons 8.378000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR1J4.3_946_10000_0.7896_0.8378_1.png
                gene_name: OR1J4
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
OR10A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.804081e-02	ci left: 3.899802e-01	ci right 4.092783e-01	k: 3996	n:10000
Cons ci ratio: 7.070558e-02	ci left: 2.267179e-01	ci right 2.434367e-01	k: 2350	n:10000
KS ci ratio: 5.120650e-02	ci left: 3.599296e-01	ci right 3.789466e-01	k: 3694	n:10000
OR10A4   10000 perm   2 sec   (6465 perm/sec)   p_kst 3.694000e-01   p_cons 2.350000e-01   p_joint 3.996000e-01

Outputting figure to mutsig2_images.part000000000120/OR10A4.2_952_10000_0.3694_0.235_0.3996.png
                gene_name: OR10A4
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 74 percent done.
OR10K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.839059e-02	ci left: 6.464944e-01	ci right 6.652148e-01	k: 6559	n:10000
Cons ci ratio: 3.032889e-02	ci left: 6.159285e-01	ci right 6.349984e-01	k: 6255	n:10000
KS ci ratio: 2.260762e-02	ci left: 7.417955e-01	ci right 7.588585e-01	k: 7504	n:10000
OR10K2   10000 perm   2 sec   (6625 perm/sec)   p_kst 7.504000e-01   p_cons 6.255000e-01   p_joint 6.559000e-01

Outputting figure to mutsig2_images.part000000000120/OR10K2.2_943_10000_0.7504_0.6255_0.6559.png
                gene_name: OR10K2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 75 percent done.
OR10P1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.008344e-02	ci left: 6.197470e-01	ci right 6.387777e-01	k: 6293	n:10000
Cons ci ratio: 3.084891e-02	ci left: 6.078915e-01	ci right 6.270400e-01	k: 6175	n:10000
KS ci ratio: 8.363681e-02	ci left: 1.725141e-01	ci right 1.876728e-01	k: 1800	n:10000
OR10P1   10000 perm   1 sec   (6804 perm/sec)   p_kst 1.800000e-01   p_cons 6.175000e-01   p_joint 6.293000e-01

Outputting figure to mutsig2_images.part000000000120/OR10P1.2_946_10000_0.18_0.6175_0.6293.png
                gene_name: OR10P1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 76 percent done.
OR10Q1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.742710e-02	ci left: 8.275777e-01	ci right 8.422267e-01	k: 8350	n:10000
Cons ci ratio: 3.741616e-02	ci left: 5.133552e-01	ci right 5.330313e-01	k: 5232	n:10000
KS ci ratio: 1.917116e-02	ci left: 7.991260e-01	ci right 8.146948e-01	k: 8070	n:10000
OR10Q1   10000 perm   2 sec   (6543 perm/sec)   p_kst 8.070000e-01   p_cons 5.232000e-01   p_joint 8.350000e-01

Outputting figure to mutsig2_images.part000000000120/OR10Q1.2_964_10000_0.807_0.5232_0.835.png
                gene_name: OR10Q1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 78 percent done.
OR10R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.145295e-03	ci left: 9.919467e-01	ci right 9.951556e-01	k: 9937	n:10000
KS ci ratio: 6.515890e-03	ci left: 9.698435e-01	ci right 9.762769e-01	k: 9732	n:10000
OR10R2   10000 perm   2 sec   (6514 perm/sec)   p_kst 9.732000e-01   p_cons 9.937000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR10R2.2_1012_10000_0.9732_0.9937_1.png
                gene_name: OR10R2
               theta_stop: 0.0065 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
OR11G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.999384e-02	ci left: 4.800563e-01	ci right 4.997496e-01	k: 4899	n:10000
Cons ci ratio: 2.890169e-02	ci left: 6.383461e-01	ci right 6.571677e-01	k: 6478	n:10000
KS ci ratio: 1.209850e-01	ci left: 8.922438e-02	ci right 1.008128e-01	k: 949	n:10000
OR11G2   10000 perm   2 sec   (6649 perm/sec)   p_kst 9.490000e-02   p_cons 6.478000e-01   p_joint 4.899000e-01

Joint ci ratio: 2.792515e-02	ci left: 4.892966e-01	ci right 5.032044e-01	k: 9925	n:20000
Cons ci ratio: 2.040388e-02	ci left: 6.418872e-01	ci right 6.551696e-01	k: 12971	n:20000
KS ci ratio: 8.580069e-02	ci left: 9.043103e-02	ci right 9.858730e-02	k: 1889	n:20000
OR11G2   20000 perm   3 sec   (5865 perm/sec)   p_kst 9.445000e-02   p_cons 6.485500e-01   p_joint 4.962500e-01

Outputting figure to mutsig2_images.part000000000120/OR11G2.2_1042_20000_0.09445_0.64855_0.49625.png
                gene_name: OR11G2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 81 percent done.
OR11H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.496762e-02	ci left: 8.661108e-01	ci right 8.792713e-01	k: 8728	n:10000
KS ci ratio: 1.766676e-02	ci left: 8.237123e-01	ci right 8.384943e-01	k: 8312	n:10000
OR11H1   10000 perm   1 sec   (6823 perm/sec)   p_kst 8.312000e-01   p_cons 8.728000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR11H1.2_985_10000_0.8312_0.8728_1.png
                gene_name: OR11H1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
OR13C4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.561216e-02	ci left: 6.917176e-01	ci right 7.097653e-01	k: 7008	n:10000
Cons ci ratio: 4.398338e-02	ci left: 4.328329e-01	ci right 4.524006e-01	k: 4426	n:10000
KS ci ratio: 4.111420e-02	ci left: 4.662695e-01	ci right 4.859444e-01	k: 4761	n:10000
OR13C4   10000 perm   1 sec   (6876 perm/sec)   p_kst 4.761000e-01   p_cons 4.426000e-01   p_joint 7.008000e-01

Outputting figure to mutsig2_images.part000000000120/OR13C4.2_961_10000_0.4761_0.4426_0.7008.png
                gene_name: OR13C4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 84 percent done.
OR13C5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.879644e-02	ci left: 4.952504e-01	ci right 5.149466e-01	k: 5051	n:10000
Cons ci ratio: 2.887686e-03	ci left: 9.930731e-01	ci right 9.960275e-01	k: 9947	n:10000
KS ci ratio: 2.089368e-01	ci left: 3.043932e-02	ci right 3.763545e-02	k: 339	n:10000
OR13C5   10000 perm   1 sec   (6692 perm/sec)   p_kst 3.390000e-02   p_cons 9.947000e-01   p_joint 5.051000e-01

Joint ci ratio: 1.135116e-02	ci left: 8.514631e-01	ci right 8.612331e-01	k: 17128	n:20000
Cons ci ratio: 2.116868e-03	ci left: 9.931020e-01	ci right 9.952505e-01	k: 19885	n:20000
KS ci ratio: 1.492271e-01	ci left: 3.085647e-02	ci right 3.588039e-02	k: 666	n:20000
OR13C5   20000 perm   3 sec   (5882 perm/sec)   p_kst 3.330000e-02   p_cons 9.942500e-01   p_joint 8.564000e-01

Joint ci ratio: 1.403062e-02	ci left: 7.172610e-01	ci right 7.274292e-01	k: 21671	n:30000
Cons ci ratio: 1.797101e-03	ci left: 9.928099e-01	ci right 9.946259e-01	k: 29813	n:30000
KS ci ratio: 1.242077e-01	ci left: 3.013415e-02	ci right 3.415712e-02	k: 963	n:30000
OR13C5   30000 perm   5 sec   (5584 perm/sec)   p_kst 3.210000e-02   p_cons 9.937667e-01   p_joint 7.223667e-01

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 1.529059e-03	ci left: 9.931671e-01	ci right 9.947098e-01	k: 39759	n:40000
KS ci ratio: 1.085013e-01	ci left: 2.988292e-02	ci right 3.333552e-02	k: 1263	n:40000
OR13C5   40000 perm   7 sec   (5387 perm/sec)   p_kst 3.157500e-02   p_cons 9.939750e-01   p_joint 1

Joint ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
Cons ci ratio: 1.350487e-03	ci left: 9.934103e-01	ci right 9.947713e-01	k: 49706	n:50000
KS ci ratio: 9.768700e-02	ci left: 2.967384e-02	ci right 3.274091e-02	k: 1559	n:50000
OR13C5   50000 perm   10 sec   (5235 perm/sec)   p_kst 3.118000e-02   p_cons 9.941200e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR13C5.2_961_50000_0.03118_0.99412_1.png
                gene_name: OR13C5
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
OR13D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.714184e-02	ci left: 8.321569e-01	ci right 8.466448e-01	k: 8395	n:10000
KS ci ratio: 4.220110e-02	ci left: 4.532888e-01	ci right 4.729327e-01	k: 4631	n:10000
OR13D1   10000 perm   1 sec   (6769 perm/sec)   p_kst 4.631000e-01   p_cons 8.395000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR13D1.2_1045_10000_0.4631_0.8395_1.png
                gene_name: OR13D1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
OR14A16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.312653e-02	ci left: 7.331027e-01	ci right 7.503563e-01	k: 7418	n:10000
Cons ci ratio: 1.365768e-02	ci left: 8.855472e-01	ci right 8.978236e-01	k: 8918	n:10000
KS ci ratio: 9.096898e-02	ci left: 1.494297e-01	ci right 1.637710e-01	k: 1565	n:10000
OR14A16   10000 perm   1 sec   (6932 perm/sec)   p_kst 1.565000e-01   p_cons 8.918000e-01   p_joint 7.418000e-01

Outputting figure to mutsig2_images.part000000000120/OR14A16.2_934_10000_0.1565_0.8918_0.7418.png
                gene_name: OR14A16
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 88 percent done.
OR14I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.220355e-02	ci left: 5.873093e-01	ci right 6.066342e-01	k: 5970	n:10000
KS ci ratio: 3.989796e-02	ci left: 4.812555e-01	ci right 5.009497e-01	k: 4911	n:10000
OR14I1   10000 perm   2 sec   (6120 perm/sec)   p_kst 4.911000e-01   p_cons 5.970000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR14I1.2_940_10000_0.4911_0.597_1.png
                gene_name: OR14I1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
OR1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.046834e-02	ci left: 9.284392e-01	ci right 9.383065e-01	k: 9335	n:10000
KS ci ratio: 2.131539e-02	ci left: 7.634461e-01	ci right 7.799953e-01	k: 7718	n:10000
OR1A2   10000 perm   2 sec   (6336 perm/sec)   p_kst 7.718000e-01   p_cons 9.335000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR1A2.2_934_10000_0.7718_0.9335_1.png
                gene_name: OR1A2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
OR1E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.376064e-02	ci left: 7.224953e-01	ci right 7.399698e-01	k: 7313	n:10000
KS ci ratio: 2.765211e-02	ci left: 6.583700e-01	ci right 6.769322e-01	k: 6677	n:10000
OR1E1   10000 perm   1 sec   (7041 perm/sec)   p_kst 6.677000e-01   p_cons 7.313000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR1E1.2_949_10000_0.6677_0.7313_1.png
                gene_name: OR1E1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
OR1F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.530083e-02	ci left: 1.377611e-01	ci right 1.516466e-01	k: 1446	n:10000
Cons ci ratio: 1.637446e-01	ci left: 4.974666e-02	ci right 5.871525e-02	k: 541	n:10000
KS ci ratio: 1.313289e-01	ci left: 7.640391e-02	ci right 8.724117e-02	k: 817	n:10000
OR1F1   10000 perm   2 sec   (6525 perm/sec)   p_kst 8.170000e-02   p_cons 5.410000e-02   p_joint 1.446000e-01

Joint ci ratio: 6.810596e-02	ci left: 1.372391e-01	ci right 1.469652e-01	k: 2841	n:20000
Cons ci ratio: 1.178121e-01	ci left: 4.935201e-02	ci right 5.557892e-02	k: 1048	n:20000
KS ci ratio: 9.264975e-02	ci left: 7.833140e-02	ci right 8.599059e-02	k: 1642	n:20000
OR1F1   20000 perm   4 sec   (5672 perm/sec)   p_kst 8.210000e-02   p_cons 5.240000e-02   p_joint 1.420500e-01

Joint ci ratio: 8.009775e-02	ci left: 7.096438e-02	ci right 7.691845e-02	k: 2217	n:30000
Cons ci ratio: 9.663212e-02	ci left: 4.948182e-02	ci right 5.453872e-02	k: 1559	n:30000
KS ci ratio: 7.592597e-02	ci left: 7.849344e-02	ci right 8.472121e-02	k: 2447	n:30000
OR1F1   30000 perm   5 sec   (5495 perm/sec)   p_kst 8.156667e-02   p_cons 5.196667e-02   p_joint 7.390000e-02

Outputting figure to mutsig2_images.part000000000120/OR1F1.2_943_30000_0.081567_0.051967_0.0739.png
                gene_name: OR1F1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.077 

Current progress: 94 percent done.
OR1G1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.563461e-03	ci left: 9.899424e-01	ci right 9.935624e-01	k: 9919	n:10000
KS ci ratio: 2.566195e-01	ci left: 1.987038e-02	ci right 2.581208e-02	k: 227	n:10000
OR1G1   10000 perm   2 sec   (6237 perm/sec)   p_kst 2.270000e-02   p_cons 9.919000e-01   p_joint 1

Joint ci ratio: 3.160336e-02	ci left: 4.278646e-01	ci right 4.416543e-01	k: 8695	n:20000
Cons ci ratio: 2.488890e-03	ci left: 9.907200e-01	ci right 9.932338e-01	k: 19841	n:20000
KS ci ratio: 1.874375e-01	ci left: 1.939152e-02	ci right 2.344929e-02	k: 427	n:20000
OR1G1   20000 perm   3 sec   (5769 perm/sec)   p_kst 2.135000e-02   p_cons 9.920500e-01   p_joint 4.347500e-01

Joint ci ratio: 2.497559e-02	ci left: 4.452244e-01	ci right 4.565184e-01	k: 13526	n:30000
Cons ci ratio: 2.176680e-03	ci left: 9.897246e-01	ci right 9.919121e-01	k: 29726	n:30000
KS ci ratio: 1.563089e-01	ci left: 1.892640e-02	ci right 2.216738e-02	k: 615	n:30000
OR1G1   30000 perm   5 sec   (5574 perm/sec)   p_kst 2.050000e-02   p_cons 9.908667e-01   p_joint 4.508667e-01

Joint ci ratio: 1.380113e-02	ci left: 6.638872e-01	ci right 6.731383e-01	k: 26741	n:40000
Cons ci ratio: 1.875563e-03	ci left: 9.899729e-01	ci right 9.918548e-01	k: 39638	n:40000
KS ci ratio: 1.319895e-01	ci left: 2.014929e-02	ci right 2.302075e-02	k: 862	n:40000
OR1G1   40000 perm   7 sec   (5440 perm/sec)   p_kst 2.155000e-02   p_cons 9.909500e-01   p_joint 6.685250e-01

Joint ci ratio: 1.433976e-02	ci left: 5.948087e-01	ci right 6.034198e-01	k: 29956	n:50000
Cons ci ratio: 1.642239e-03	ci left: 9.904677e-01	ci right 9.921144e-01	k: 49566	n:50000
KS ci ratio: 1.187746e-01	ci left: 2.005230e-02	ci right 2.260369e-02	k: 1065	n:50000
OR1G1   50000 perm   9 sec   (5321 perm/sec)   p_kst 2.130000e-02   p_cons 9.913200e-01   p_joint 5.991200e-01

Joint ci ratio: 1.509769e-02	ci left: 5.250797e-01	ci right 5.330842e-01	k: 31745	n:60000
Cons ci ratio: 1.472867e-03	ci left: 9.908545e-01	ci right 9.923307e-01	k: 59497	n:60000
KS ci ratio: 1.074095e-01	ci left: 2.054901e-02	ci right 2.289757e-02	k: 1302	n:60000
OR1G1   60000 perm   12 sec   (5209 perm/sec)   p_kst 2.170000e-02   p_cons 9.916167e-01   p_joint 5.290833e-01

Joint ci ratio: 8.664265e-03	ci left: 7.419260e-01	ci right 7.483965e-01	k: 52162	n:70000
Cons ci ratio: 1.367122e-03	ci left: 9.908663e-01	ci right 9.922354e-01	k: 69410	n:70000
KS ci ratio: 9.974985e-02	ci left: 2.050793e-02	ci right 2.267484e-02	k: 1510	n:70000
OR1G1   70000 perm   14 sec   (5103 perm/sec)   p_kst 2.157143e-02   p_cons 9.915714e-01   p_joint 7.451714e-01

Outputting figure to mutsig2_images.part000000000120/OR1G1.2_946_70000_0.021571_0.99157_0.74517.png
                gene_name: OR1G1
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 96 percent done.
OR1I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.058784e-02	ci left: 2.273104e-01	ci right 2.440439e-01	k: 2356	n:10000
Cons ci ratio: 1.289403e-01	ci left: 7.912021e-02	ci right 9.012318e-02	k: 845	n:10000
KS ci ratio: 2.130330e-02	ci left: 7.636486e-01	ci right 7.801928e-01	k: 7720	n:10000
OR1I1   10000 perm   2 sec   (6256 perm/sec)   p_kst 7.720000e-01   p_cons 8.450000e-02   p_joint 2.356000e-01

Joint ci ratio: 5.095377e-02	ci left: 2.224977e-01	ci right 2.341814e-01	k: 4566	n:20000
Cons ci ratio: 9.180014e-02	ci left: 7.970183e-02	ci right 8.741975e-02	k: 1670	n:20000
KS ci ratio: 1.514066e-02	ci left: 7.643054e-01	ci right 7.760160e-01	k: 15404	n:20000
OR1I1   20000 perm   3 sec   (5721 perm/sec)   p_kst 7.702000e-01   p_cons 8.350000e-02   p_joint 2.283000e-01

Outputting figure to mutsig2_images.part000000000120/OR1I1.2_1072_20000_0.7702_0.0835_0.2283.png
                gene_name: OR1I1
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 97 percent done.
OR1J2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.060454e-03	ci left: 9.810225e-01	ci right 9.860902e-01	k: 9837	n:10000
Cons ci ratio: 2.589946e-02	ci left: 6.869792e-01	ci right 7.051065e-01	k: 6961	n:10000
KS ci ratio: 7.507648e-03	ci left: 9.608952e-01	ci right 9.682310e-01	k: 9647	n:10000
OR1J2   10000 perm   1 sec   (6838 perm/sec)   p_kst 9.647000e-01   p_cons 6.961000e-01   p_joint 9.837000e-01

Outputting figure to mutsig2_images.part000000000120/OR1J2.2_946_10000_0.9647_0.6961_0.9837.png
                gene_name: OR1J2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 99 percent done.
OR1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.530301e-02	ci left: 5.422895e-01	ci right 5.618801e-01	k: 5521	n:10000
KS ci ratio: 1.697625e-02	ci left: 8.348036e-01	ci right 8.491966e-01	k: 8421	n:10000
OR1L1   10000 perm   2 sec   (6245 perm/sec)   p_kst 8.421000e-01   p_cons 5.521000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000120/OR1L1.2_935_10000_0.8421_0.5521_1.png
                gene_name: OR1L1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000120
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 120 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1531>
Subject: Job 9894052: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1531>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000121> was used as the working directory.
Started at Sat Oct  6 00:22:01 2012
Results reported at Sat Oct  6 00:38:59 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000121.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000121.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 121  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000121.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1096.33 sec.
    Max Memory :      3661 MB
    Max Swap   :      5999 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
121
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 121
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 121: processing genes 10819 - 10908
Calculating significance of each gene.
Using projection method.
10819	OR1N1	7.969497e-01
10820	OR1N2	5.607945e-02
10821	OR1Q1	1
10822	OR1S1	1
10823	OR1S2	1.457340e-01
10824	OR2A1	7.954563e-01
10825	OR2A12	2.378608e-02
10826	OR2A14	1.229884e-01
10827	OR2A2	7.954708e-01
10828	OR2A25	3.623282e-01
10829	OR2A4	5.260247e-01
10830	OR2A42	1
10831	OR2A5	2.691757e-02
10832	OR2A7	6.139591e-01
10833	OR2AE1	8.149631e-01
10834	OR2AG1	3.365444e-01
10835	OR2AG2	4.161448e-01
10836	OR2AK2	4.031687e-01
10837	OR2AT4	2.297575e-01
10838	OR2B11	3.111840e-02
10839	OR2B2	2.706734e-01
10840	OR2B3	1
10841	OR2B6	3.532681e-01
10842	OR2C1	1.222693e-01
10843	OR2C3	4.033869e-01
10844	OR2D2	3.972371e-01
10845	OR2D3	1.371793e-01
10846	OR2F1	1.196593e-01
10847	OR2F2	3.159973e-01
10848	OR2G2	1.013207e-01
10849	OR2G3	7.777281e-01
10850	OR2G6	1.301113e-02
10851	OR2H1	7.355426e-02
10852	OR2H2	3.678822e-01
10853	OR2J2	6.703606e-01
10854	OR2J3	3.033168e-01
10855	OR2K2	7.487242e-02
10856	OR2L13	6.526023e-06
10857	OR2L2	3.528866e-01
10858	OR2L3	3.801705e-03
10859	OR2L8	1.522157e-01
10860	OR2M2	1.271329e-03
10861	OR2M3	1.484547e-01
10862	OR2M4	4.153258e-05
10863	OR2M5	1.562787e-02
10864	OR2M7	2.120642e-01
10865	OR2S2	1
10866	OR2T1	4.668922e-01
10867	OR2T10	3.038321e-01
10868	OR2T11	3.348164e-02
10869	OR2T12	1.139744e-01
10870	OR2T2	5.049556e-01
10871	OR2T27	2.441906e-01
10872	OR2T29	1
10873	OR2T3	1
10874	OR2T33	1.617282e-02
10875	OR2T34	9.902706e-02
10876	OR2T35	2.852350e-01
10877	OR2T4	1.530088e-01
10878	OR2T5	1
10879	OR2T6	6.948476e-03
10880	OR2T8	1.040476e-02
10881	OR2V2	1
10882	OR2W1	3.006517e-02
10883	OR2W3	3.625190e-01
10884	OR2W5	2.949941e-01
10885	OR2Y1	3.216398e-01
10886	OR2Z1	4.056043e-01
10887	OR3A1	2.347739e-01
10888	OR3A2	1
10889	OR3A3	5.108688e-01
10890	OR4A15	5.281399e-04
10891	OR4A16	1.158955e-01
10892	OR4A47	4.467726e-01
10893	OR4A5	3.349146e-03
10894	OR4B1	4.679776e-01
In gene OR4C11 the following bins exceed PROBCAP:
    COAD-AA-A004	categ 6	N = 937     n = 1	mu =   1.64e-07
10895	OR4C11	4.676332e-03
10896	OR4C12	4.471136e-01
10897	OR4C13	5.084549e-01
10898	OR4C15	7.985909e-02
10899	OR4C16	6.943899e-01
10900	OR4C3	5.823633e-01
10901	OR4C46	3.837547e-02
10902	OR4C6	1.948932e-01
10903	OR4D1	1.502795e-01
10904	OR4D10	2.042653e-01
10905	OR4D11	1.580387e-01
10906	OR4D2	1
10907	OR4D5	1.950751e-01
10908	OR4D6	3.006924e-01
Done

Running MutSig 2:
Scatter job 121: processing genes 10819 - 10908
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OR2L13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.205655e-02	ci left: 5.895172e-01	ci right 6.088250e-01	k: 5992	n:10000
KS ci ratio: 1.531595e-02	ci left: 8.608001e-01	ci right 8.741851e-01	k: 8676	n:10000
OR2L13   10000 perm   2 sec   (4808 perm/sec)   p_kst 8.676000e-01   p_cons 5.992000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2L13.10_943_10000_0.8676_0.5992_1.png
                gene_name: OR2L13
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 1 percent done.
OR2M4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.278700e-01	ci left: 8.038196e-02	ci right 9.146065e-02	k: 858	n:10000
Cons ci ratio: 2.326663e-01	ci left: 2.438298e-02	ci right 3.089610e-02	k: 275	n:10000
KS ci ratio: 4.312042e-02	ci left: 4.426097e-01	ci right 4.622180e-01	k: 4524	n:10000
OR2M4   10000 perm   2 sec   (4674 perm/sec)   p_kst 4.524000e-01   p_cons 2.750000e-02   p_joint 8.580000e-02

Joint ci ratio: 9.984730e-02	ci left: 6.796658e-02	ci right 7.515858e-02	k: 1430	n:20000
Cons ci ratio: 1.659200e-01	ci left: 2.489359e-02	ci right 2.944527e-02	k: 542	n:20000
KS ci ratio: 2.953593e-02	ci left: 4.613145e-01	ci right 4.751947e-01	k: 9365	n:20000
OR2M4   20000 perm   5 sec   (3885 perm/sec)   p_kst 4.682500e-01   p_cons 2.710000e-02   p_joint 7.150000e-02

Joint ci ratio: 8.082808e-02	ci left: 6.975402e-02	ci right 7.566239e-02	k: 2180	n:30000
Cons ci ratio: 1.328564e-01	ci left: 2.632361e-02	ci right 3.010183e-02	k: 845	n:30000
KS ci ratio: 2.498231e-02	ci left: 4.450913e-01	ci right 4.563849e-01	k: 13522	n:30000
OR2M4   30000 perm   8 sec   (3673 perm/sec)   p_kst 4.507333e-01   p_cons 2.816667e-02   p_joint 7.266667e-02

Joint ci ratio: 8.341158e-02	ci left: 5.013832e-02	ci right 5.452696e-02	k: 2092	n:40000
Cons ci ratio: 1.255930e-01	ci left: 2.227994e-02	ci right 2.528974e-02	k: 950	n:40000
KS ci ratio: 2.164364e-02	ci left: 4.456654e-01	ci right 4.554418e-01	k: 18022	n:40000
OR2M4   40000 perm   11 sec   (3714 perm/sec)   p_kst 4.505500e-01   p_cons 2.375000e-02   p_joint 5.230000e-02

Joint ci ratio: 7.138401e-02	ci left: 5.484597e-02	ci right 5.892567e-02	k: 2843	n:50000
Cons ci ratio: 1.121290e-01	ci left: 2.252056e-02	ci right 2.521511e-02	k: 1192	n:50000
KS ci ratio: 1.931548e-02	ci left: 4.472908e-01	ci right 4.560348e-01	k: 22583	n:50000
OR2M4   50000 perm   13 sec   (3715 perm/sec)   p_kst 4.516600e-01   p_cons 2.384000e-02   p_joint 5.686000e-02

Joint ci ratio: 6.619699e-02	ci left: 5.338591e-02	ci right 5.705727e-02	k: 3312	n:60000
Cons ci ratio: 1.019806e-01	ci left: 2.280636e-02	ci right 2.527331e-02	k: 1441	n:60000
KS ci ratio: 1.758797e-02	ci left: 4.489277e-01	ci right 4.569102e-01	k: 27175	n:60000
OR2M4   60000 perm   16 sec   (3694 perm/sec)   p_kst 4.529167e-01   p_cons 2.401667e-02   p_joint 5.520000e-02

Joint ci ratio: 6.003227e-02	ci left: 5.568810e-02	ci right 5.914870e-02	k: 4018	n:70000
Cons ci ratio: 9.524077e-02	ci left: 2.250207e-02	ci right 2.476623e-02	k: 1653	n:70000
KS ci ratio: 1.630411e-02	ci left: 4.485935e-01	ci right 4.559819e-01	k: 31660	n:70000
OR2M4   70000 perm   19 sec   (3682 perm/sec)   p_kst 4.522857e-01   p_cons 2.361429e-02   p_joint 5.740000e-02

Outputting figure to mutsig2_images.part000000000121/OR2M4.8_940_70000_0.45229_0.023614_0.0574.png
                gene_name: OR2M4
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.059 

Current progress: 3 percent done.
OR2L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.530440e-02	ci left: 3.250533e-01	ci right 3.436433e-01	k: 3343	n:10000
Cons ci ratio: 2.458394e-02	ci left: 7.087653e-01	ci right 7.265077e-01	k: 7177	n:10000
KS ci ratio: 7.735992e-02	ci left: 1.963361e-01	ci right 2.122365e-01	k: 2042	n:10000
OR2L3   10000 perm   2 sec   (5388 perm/sec)   p_kst 2.042000e-01   p_cons 7.177000e-01   p_joint 3.343000e-01

Outputting figure to mutsig2_images.part000000000121/OR2L3.7_943_10000_0.2042_0.7177_0.3343.png
                gene_name: OR2L3
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 4 percent done.
OR2M2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.150553e-01	ci left: 9.798552e-02	ci right 1.100463e-01	k: 1039	n:10000
Cons ci ratio: 2.595468e-01	ci left: 1.940213e-02	ci right 2.528070e-02	k: 222	n:10000
KS ci ratio: 8.113531e-03	ci left: 9.549276e-01	ci right 9.628022e-01	k: 9590	n:10000
OR2M2   10000 perm   2 sec   (5728 perm/sec)   p_kst 9.590000e-01   p_cons 2.220000e-02   p_joint 1.039000e-01

Joint ci ratio: 9.441389e-02	ci left: 7.559155e-02	ci right 8.313128e-02	k: 1586	n:20000
Cons ci ratio: 1.656068e-01	ci left: 2.498955e-02	ci right 2.954929e-02	k: 544	n:20000
KS ci ratio: 5.835444e-03	ci left: 9.547151e-01	ci right 9.603509e-01	k: 19152	n:20000
OR2M2   20000 perm   4 sec   (5052 perm/sec)   p_kst 9.576000e-01   p_cons 2.720000e-02   p_joint 7.930000e-02

Joint ci ratio: 6.985254e-02	ci left: 9.167188e-02	ci right 9.834013e-02	k: 2849	n:30000
Cons ci ratio: 1.402838e-01	ci left: 2.358463e-02	ci right 2.717476e-02	k: 760	n:30000
KS ci ratio: 4.756024e-03	ci left: 9.553952e-01	ci right 9.599823e-01	k: 28732	n:30000
OR2M2   30000 perm   6 sec   (4829 perm/sec)   p_kst 9.577333e-01   p_cons 2.533333e-02   p_joint 9.496667e-02

Joint ci ratio: 5.744459e-02	ci left: 1.012716e-01	ci right 1.072860e-01	k: 4170	n:40000
Cons ci ratio: 1.206185e-01	ci left: 2.417129e-02	ci right 2.729807e-02	k: 1028	n:40000
KS ci ratio: 4.083210e-03	ci left: 9.564227e-01	ci right 9.603604e-01	k: 38337	n:40000
OR2M2   40000 perm   9 sec   (4604 perm/sec)   p_kst 9.584250e-01   p_cons 2.570000e-02   p_joint 1.042500e-01

Joint ci ratio: 5.405754e-02	ci left: 9.258177e-02	ci right 9.774535e-02	k: 4757	n:50000
Cons ci ratio: 1.122254e-01	ci left: 2.248166e-02	ci right 2.517402e-02	k: 1190	n:50000
KS ci ratio: 3.623691e-03	ci left: 9.572659e-01	ci right 9.607606e-01	k: 47952	n:50000
OR2M2   50000 perm   12 sec   (4304 perm/sec)   p_kst 9.590400e-01   p_cons 2.380000e-02   p_joint 9.514000e-02

Joint ci ratio: 4.686375e-02	ci left: 1.019806e-01	ci right 1.068910e-01	k: 6265	n:60000
Cons ci ratio: 9.552459e-02	ci left: 2.599439e-02	ci right 2.861826e-02	k: 1637	n:60000
KS ci ratio: 3.316538e-03	ci left: 9.572129e-01	ci right 9.604091e-01	k: 57530	n:60000
OR2M2   60000 perm   15 sec   (4067 perm/sec)   p_kst 9.588333e-01   p_cons 2.728333e-02   p_joint 1.044167e-01

Outputting figure to mutsig2_images.part000000000121/OR2M2.7_1048_60000_0.95883_0.027283_0.10442.png
                gene_name: OR2M2
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 6 percent done.
OR2T33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.644396e-02	ci left: 2.001794e-01	ci right 2.161909e-01	k: 2081	n:10000
Cons ci ratio: 9.309272e-02	ci left: 1.435445e-01	ci right 1.576597e-01	k: 1505	n:10000
KS ci ratio: 5.871592e-02	ci left: 2.991568e-01	ci right 3.173550e-01	k: 3082	n:10000
OR2T33   10000 perm   2 sec   (4721 perm/sec)   p_kst 3.082000e-01   p_cons 1.505000e-01   p_joint 2.081000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T33.7_967_10000_0.3082_0.1505_0.2081.png
                gene_name: OR2T33
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 7 percent done.
OR4A15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.809187e-03	ci left: 9.755703e-01	ci right 9.813463e-01	k: 9786	n:10000
KS ci ratio: 7.863244e-03	ci left: 9.574375e-01	ci right 9.650907e-01	k: 9614	n:10000
OR4A15   10000 perm   2 sec   (5208 perm/sec)   p_kst 9.614000e-01   p_cons 9.786000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR4A15.7_1039_10000_0.9614_0.9786_1.png
                gene_name: OR4A15
               theta_stop: 0.0079 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
OR4A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.998584e-02	ci left: 4.801563e-01	ci right 4.998496e-01	k: 4900	n:10000
KS ci ratio: 1.211278e-02	ci left: 9.072023e-01	ci right 9.183559e-01	k: 9129	n:10000
OR4A5   10000 perm   2 sec   (5673 perm/sec)   p_kst 9.129000e-01   p_cons 4.900000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR4A5.6_952_10000_0.9129_0.49_1.png
                gene_name: OR4A5
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
OR1N2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.748669e-03	ci left: 9.678372e-01	ci right 9.744845e-01	k: 9713	n:10000
Cons ci ratio: 1.044305e-02	ci left: 9.287493e-01	ci right 9.385962e-01	k: 9338	n:10000
KS ci ratio: 2.457788e-02	ci left: 7.088662e-01	ci right 7.266068e-01	k: 7178	n:10000
OR1N2   10000 perm   2 sec   (5032 perm/sec)   p_kst 7.178000e-01   p_cons 9.338000e-01   p_joint 9.713000e-01

Outputting figure to mutsig2_images.part000000000121/OR1N2.5_997_10000_0.7178_0.9338_0.9713.png
                gene_name: OR1N2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 12 percent done.
OR2A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.503491e-02	ci left: 8.650892e-01	ci right 8.782934e-01	k: 8718	n:10000
KS ci ratio: 1.677804e-02	ci left: 8.379602e-01	ci right 8.522382e-01	k: 8452	n:10000
OR2A5   10000 perm   2 sec   (5740 perm/sec)   p_kst 8.452000e-01   p_cons 8.718000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2A5.5_940_10000_0.8452_0.8718_1.png
                gene_name: OR2A5
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
OR2B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.568038e-02	ci left: 8.551867e-01	ci right 8.688017e-01	k: 8621	n:10000
Cons ci ratio: 1.611275e-02	ci left: 8.484554e-01	ci right 8.623369e-01	k: 8555	n:10000
KS ci ratio: 2.426881e-02	ci left: 7.140138e-01	ci right 7.316562e-01	k: 7229	n:10000
OR2B2   10000 perm   2 sec   (5337 perm/sec)   p_kst 7.229000e-01   p_cons 8.555000e-01   p_joint 8.621000e-01

Outputting figure to mutsig2_images.part000000000121/OR2B2.5_1078_10000_0.7229_0.8555_0.8621.png
                gene_name: OR2B2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 14 percent done.
OR2H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.842833e-02	ci left: 6.458907e-01	ci right 6.646188e-01	k: 6553	n:10000
Cons ci ratio: 6.030900e-02	ci left: 2.879553e-01	ci right 3.059631e-01	k: 2969	n:10000
KS ci ratio: 1.963746e-02	ci left: 7.914146e-01	ci right 8.072106e-01	k: 7994	n:10000
OR2H1   10000 perm   2 sec   (5096 perm/sec)   p_kst 7.994000e-01   p_cons 2.969000e-01   p_joint 6.553000e-01

Outputting figure to mutsig2_images.part000000000121/OR2H1.5_955_10000_0.7994_0.2969_0.6553.png
                gene_name: OR2H1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 16 percent done.
OR2K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.535590e-02	ci left: 8.601875e-01	ci right 8.735980e-01	k: 8670	n:10000
Cons ci ratio: 2.347668e-02	ci left: 7.272426e-01	ci right 7.446198e-01	k: 7360	n:10000
KS ci ratio: 6.540060e-02	ci left: 2.555781e-01	ci right 2.729595e-01	k: 2642	n:10000
OR2K2   10000 perm   2 sec   (6318 perm/sec)   p_kst 2.642000e-01   p_cons 7.360000e-01   p_joint 8.670000e-01

Outputting figure to mutsig2_images.part000000000121/OR2K2.5_955_10000_0.2642_0.736_0.867.png
                gene_name: OR2K2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 17 percent done.
OR2M5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.721421e-02	ci left: 5.160570e-01	ci right 5.357279e-01	k: 5259	n:10000
Cons ci ratio: 3.911583e-02	ci left: 4.911511e-01	ci right 5.108483e-01	k: 5010	n:10000
KS ci ratio: 5.339733e-02	ci left: 3.407457e-01	ci right 3.595416e-01	k: 3501	n:10000
OR2M5   10000 perm   2 sec   (5981 perm/sec)   p_kst 3.501000e-01   p_cons 5.010000e-01   p_joint 5.259000e-01

Outputting figure to mutsig2_images.part000000000121/OR2M5.5_943_10000_0.3501_0.501_0.5259.png
                gene_name: OR2M5
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 19 percent done.
OR2T6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
Cons ci ratio: 1.504075e-01	ci left: 5.879809e-02	ci right 6.845803e-02	k: 635	n:10000
KS ci ratio: 1.289403e-01	ci left: 7.912021e-02	ci right 9.012318e-02	k: 845	n:10000
OR2T6   10000 perm   2 sec   (6273 perm/sec)   p_kst 8.450000e-02   p_cons 6.350000e-02   p_joint 6.190000e-02

Joint ci ratio: 8.034850e-02	ci left: 1.020608e-01	ci right 1.106540e-01	k: 2126	n:20000
Cons ci ratio: 1.059125e-01	ci left: 6.069528e-02	ci right 6.753211e-02	k: 1281	n:20000
KS ci ratio: 8.651020e-02	ci left: 8.905828e-02	ci right 9.716047e-02	k: 1861	n:20000
OR2T6   20000 perm   4 sec   (5419 perm/sec)   p_kst 9.305000e-02   p_cons 6.405000e-02   p_joint 1.063000e-01

Joint ci ratio: 9.268685e-02	ci left: 5.365288e-02	ci right 5.890013e-02	k: 1687	n:30000
Cons ci ratio: 8.527588e-02	ci left: 6.298724e-02	ci right 6.863053e-02	k: 1973	n:30000
KS ci ratio: 7.059395e-02	ci left: 8.990037e-02	ci right 9.651198e-02	k: 2795	n:30000
OR2T6   30000 perm   6 sec   (5100 perm/sec)   p_kst 9.316667e-02   p_cons 6.576667e-02   p_joint 5.623333e-02

Outputting figure to mutsig2_images.part000000000121/OR2T6.5_931_30000_0.093167_0.065767_0.056233.png
                gene_name: OR2T6
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.059 

Current progress: 20 percent done.
OR2T8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.060644e-02	ci left: 7.752957e-01	ci right 7.915388e-01	k: 7835	n:10000
Cons ci ratio: 3.328544e-02	ci left: 5.712572e-01	ci right 5.906956e-01	k: 5810	n:10000
KS ci ratio: 3.295844e-02	ci left: 5.760717e-01	ci right 5.954783e-01	k: 5858	n:10000
OR2T8   10000 perm   2 sec   (5452 perm/sec)   p_kst 5.858000e-01   p_cons 5.810000e-01   p_joint 7.835000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T8.5_943_10000_0.5858_0.581_0.7835.png
                gene_name: OR2T8
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 22 percent done.
OR4C15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.819582e-02	ci left: 5.030509e-01	ci right 5.227416e-01	k: 5129	n:10000
Cons ci ratio: 4.528124e-02	ci left: 4.185735e-01	ci right 4.380683e-01	k: 4283	n:10000
KS ci ratio: 5.100929e-02	ci left: 3.617196e-01	ci right 3.807555e-01	k: 3712	n:10000
OR4C15   10000 perm   2 sec   (5479 perm/sec)   p_kst 3.712000e-01   p_cons 4.283000e-01   p_joint 5.129000e-01

Outputting figure to mutsig2_images.part000000000121/OR4C15.5_1117_10000_0.3712_0.4283_0.5129.png
                gene_name: OR4C15
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 23 percent done.
OR4C46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.943783e-02	ci left: 4.870525e-01	ci right 5.067493e-01	k: 4969	n:10000
Cons ci ratio: 5.026381e-02	ci left: 3.685825e-01	ci right 3.876885e-01	k: 3781	n:10000
KS ci ratio: 3.805087e-02	ci left: 5.049514e-01	ci right 5.246400e-01	k: 5148	n:10000
OR4C46   10000 perm   2 sec   (5859 perm/sec)   p_kst 5.148000e-01   p_cons 3.781000e-01   p_joint 4.969000e-01

Outputting figure to mutsig2_images.part000000000121/OR4C46.5_934_10000_0.5148_0.3781_0.4969.png
                gene_name: OR4C46
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 25 percent done.
OR2B11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.350978e-02	ci left: 2.131958e-01	ci right 2.295668e-01	k: 2213	n:10000
Cons ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
KS ci ratio: 8.707717e-02	ci left: 1.611128e-01	ci right 1.758809e-01	k: 1684	n:10000
OR2B11   10000 perm   2 sec   (6196 perm/sec)   p_kst 1.684000e-01   p_cons 2.869000e-01   p_joint 2.213000e-01

Outputting figure to mutsig2_images.part000000000121/OR2B11.4_958_10000_0.1684_0.2869_0.2213.png
                gene_name: OR2B11
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 26 percent done.
OR2D3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.522995e-02	ci left: 3.256490e-01	ci right 3.442472e-01	k: 3349	n:10000
Cons ci ratio: 9.096898e-02	ci left: 1.494297e-01	ci right 1.637710e-01	k: 1565	n:10000
KS ci ratio: 2.259555e-02	ci left: 7.419977e-01	ci right 7.590561e-01	k: 7506	n:10000
OR2D3   10000 perm   2 sec   (5938 perm/sec)   p_kst 7.506000e-01   p_cons 1.565000e-01   p_joint 3.349000e-01

Outputting figure to mutsig2_images.part000000000121/OR2D3.4_997_10000_0.7506_0.1565_0.3349.png
                gene_name: OR2D3
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 28 percent done.
OR2F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.939316e-03	ci left: 9.661506e-01	ci right 9.729722e-01	k: 9697	n:10000
KS ci ratio: 2.148471e-02	ci left: 7.606116e-01	ci right 7.772314e-01	k: 7690	n:10000
OR2F1   10000 perm   2 sec   (5377 perm/sec)   p_kst 7.690000e-01   p_cons 9.697000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2F1.4_958_10000_0.769_0.9697_1.png
                gene_name: OR2F1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
OR2G6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.419618e-02	ci left: 5.580221e-01	ci right 5.775384e-01	k: 5678	n:10000
KS ci ratio: 1.683568e-02	ci left: 8.370436e-01	ci right 8.513552e-01	k: 8443	n:10000
OR2G6   10000 perm   2 sec   (5205 perm/sec)   p_kst 8.443000e-01   p_cons 5.678000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2G6.4_955_10000_0.8443_0.5678_1.png
                gene_name: OR2G6
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
OR2M3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.904642e-02	ci left: 3.801249e-01	ci right 3.993394e-01	k: 3897	n:10000
Cons ci ratio: 2.797044e-02	ci left: 6.532365e-01	ci right 6.718687e-01	k: 6626	n:10000
KS ci ratio: 5.509389e-02	ci left: 3.267412e-01	ci right 3.453544e-01	k: 3360	n:10000
OR2M3   10000 perm   2 sec   (5448 perm/sec)   p_kst 3.360000e-01   p_cons 6.626000e-01   p_joint 3.897000e-01

Outputting figure to mutsig2_images.part000000000121/OR2M3.4_943_10000_0.336_0.6626_0.3897.png
                gene_name: OR2M3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 32 percent done.
OR2T11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.029907e-02	ci left: 4.762592e-01	ci right 4.959489e-01	k: 4861	n:10000
Cons ci ratio: 3.818818e-02	ci left: 5.031509e-01	ci right 5.228415e-01	k: 5130	n:10000
KS ci ratio: 6.199738e-02	ci left: 2.766613e-01	ci right 2.944638e-01	k: 2855	n:10000
OR2T11   10000 perm   2 sec   (5405 perm/sec)   p_kst 2.855000e-01   p_cons 5.130000e-01   p_joint 4.861000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T11.4_955_10000_0.2855_0.513_0.4861.png
                gene_name: OR2T11
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 33 percent done.
OR2T34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.155892e-02	ci left: 1.477618e-01	ci right 1.620398e-01	k: 1548	n:10000
Cons ci ratio: 9.943597e-02	ci left: 1.277721e-01	ci right 1.412416e-01	k: 1344	n:10000
KS ci ratio: 9.564886e-02	ci left: 1.368792e-01	ci right 1.507290e-01	k: 1437	n:10000
OR2T34   10000 perm   2 sec   (5458 perm/sec)   p_kst 1.437000e-01   p_cons 1.344000e-01   p_joint 1.548000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T34.4_961_10000_0.1437_0.1344_0.1548.png
                gene_name: OR2T34
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 35 percent done.
OR2W1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.513363e-02	ci left: 4.201686e-01	ci right 4.396723e-01	k: 4299	n:10000
Cons ci ratio: 3.845652e-02	ci left: 4.996504e-01	ci right 5.193441e-01	k: 5095	n:10000
KS ci ratio: 6.055541e-02	ci left: 2.862707e-01	ci right 3.042488e-01	k: 2952	n:10000
OR2W1   10000 perm   2 sec   (5575 perm/sec)   p_kst 2.952000e-01   p_cons 5.095000e-01   p_joint 4.299000e-01

Outputting figure to mutsig2_images.part000000000121/OR2W1.4_967_10000_0.2952_0.5095_0.4299.png
                gene_name: OR2W1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 36 percent done.
OR4C11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.755249e-02	ci left: 6.599808e-01	ci right 6.785206e-01	k: 6693	n:10000
Cons ci ratio: 2.790793e-02	ci left: 6.542430e-01	ci right 6.728616e-01	k: 6636	n:10000
KS ci ratio: 3.961964e-02	ci left: 4.847535e-01	ci right 5.044496e-01	k: 4946	n:10000
OR4C11   10000 perm   2 sec   (5675 perm/sec)   p_kst 4.946000e-01   p_cons 6.636000e-01   p_joint 6.693000e-01

Outputting figure to mutsig2_images.part000000000121/OR4C11.4_937_10000_0.4946_0.6636_0.6693.png
                gene_name: OR4C11
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 38 percent done.
OR4D10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.496310e-02	ci left: 1.679914e-01	ci right 1.829981e-01	k: 1754	n:10000
Cons ci ratio: 9.393873e-02	ci left: 1.412895e-01	ci right 1.553161e-01	k: 1482	n:10000
KS ci ratio: 1.111015e-01	ci left: 1.045169e-01	ci right 1.169109e-01	k: 1106	n:10000
OR4D10   10000 perm   2 sec   (5281 perm/sec)   p_kst 1.106000e-01   p_cons 1.482000e-01   p_joint 1.754000e-01

Joint ci ratio: 8.206427e-02	ci left: 9.818223e-02	ci right 1.066338e-01	k: 2047	n:20000
Cons ci ratio: 6.600825e-02	ci left: 1.449295e-01	ci right 1.548725e-01	k: 2997	n:20000
KS ci ratio: 7.834346e-02	ci left: 1.068747e-01	ci right 1.156386e-01	k: 2224	n:20000
OR4D10   20000 perm   4 sec   (4634 perm/sec)   p_kst 1.112000e-01   p_cons 1.498500e-01   p_joint 1.023500e-01

Outputting figure to mutsig2_images.part000000000121/OR4D10.4_940_20000_0.1112_0.14985_0.10235.png
                gene_name: OR4D10
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.11 

Current progress: 39 percent done.
OR1S2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.178368e-02	ci left: 5.936327e-01	ci right 6.129071e-01	k: 6033	n:10000
KS ci ratio: 2.342837e-02	ci left: 7.280508e-01	ci right 7.454111e-01	k: 7368	n:10000
OR1S2   10000 perm   2 sec   (6384 perm/sec)   p_kst 7.368000e-01   p_cons 6.033000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR1S2.3_982_10000_0.7368_0.6033_1.png
                gene_name: OR1S2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
OR2A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.198987e-02	ci left: 5.905209e-01	ci right 6.098207e-01	k: 6002	n:10000
KS ci ratio: 2.038770e-02	ci left: 7.789437e-01	ci right 7.950888e-01	k: 7871	n:10000
OR2A12   10000 perm   2 sec   (5607 perm/sec)   p_kst 7.871000e-01   p_cons 6.002000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2A12.3_937_10000_0.7871_0.6002_1.png
                gene_name: OR2A12
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
OR2A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.904114e-02	ci left: 6.361335e-01	ci right 6.549816e-01	k: 6456	n:10000
Cons ci ratio: 4.805083e-02	ci left: 3.898806e-01	ci right 4.091780e-01	k: 3995	n:10000
KS ci ratio: 2.906652e-02	ci left: 6.357313e-01	ci right 6.545841e-01	k: 6452	n:10000
OR2A14   10000 perm   2 sec   (5824 perm/sec)   p_kst 6.452000e-01   p_cons 3.995000e-01   p_joint 6.456000e-01

Outputting figure to mutsig2_images.part000000000121/OR2A14.3_937_10000_0.6452_0.3995_0.6456.png
                gene_name: OR2A14
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 43 percent done.
OR2AT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.748480e-02	ci left: 3.955567e-01	ci right 4.148985e-01	k: 4052	n:10000
Cons ci ratio: 2.136378e-02	ci left: 7.626362e-01	ci right 7.792057e-01	k: 7710	n:10000
KS ci ratio: 8.570440e-02	ci left: 1.655342e-01	ci right 1.804568e-01	k: 1729	n:10000
OR2AT4   10000 perm   2 sec   (4784 perm/sec)   p_kst 1.729000e-01   p_cons 7.710000e-01   p_joint 4.052000e-01

Outputting figure to mutsig2_images.part000000000121/OR2AT4.3_967_10000_0.1729_0.771_0.4052.png
                gene_name: OR2AT4
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 45 percent done.
OR2C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.045260e-02	ci left: 4.743609e-01	ci right 4.940483e-01	k: 4842	n:10000
Cons ci ratio: 3.527447e-02	ci left: 5.426902e-01	ci right 5.622792e-01	k: 5525	n:10000
KS ci ratio: 5.298924e-02	ci left: 3.442234e-01	ci right 3.630619e-01	k: 3536	n:10000
OR2C1   10000 perm   2 sec   (5149 perm/sec)   p_kst 3.536000e-01   p_cons 5.525000e-01   p_joint 4.842000e-01

Outputting figure to mutsig2_images.part000000000121/OR2C1.3_943_10000_0.3536_0.5525_0.4842.png
                gene_name: OR2C1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 46 percent done.
OR2G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.102633e-01	ci left: 1.059801e-01	ci right 1.184468e-01	k: 1121	n:10000
Cons ci ratio: 8.127917e-02	ci left: 1.809743e-01	ci right 1.964075e-01	k: 1886	n:10000
KS ci ratio: 1.243397e-01	ci left: 8.475243e-02	ci right 9.608748e-02	k: 903	n:10000
OR2G2   10000 perm   2 sec   (5334 perm/sec)   p_kst 9.030000e-02   p_cons 1.886000e-01   p_joint 1.121000e-01

Joint ci ratio: 7.552655e-02	ci left: 1.141990e-01	ci right 1.232122e-01	k: 2373	n:20000
Cons ci ratio: 5.741757e-02	ci left: 1.835451e-01	ci right 1.944454e-01	k: 3779	n:20000
KS ci ratio: 8.676735e-02	ci left: 8.856807e-02	ci right 9.665082e-02	k: 1851	n:20000
OR2G2   20000 perm   4 sec   (4869 perm/sec)   p_kst 9.255000e-02   p_cons 1.889500e-01   p_joint 1.186500e-01

Outputting figure to mutsig2_images.part000000000121/OR2G2.3_958_20000_0.09255_0.18895_0.11865.png
                gene_name: OR2G2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 48 percent done.
OR2H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.274675e-02	ci left: 3.463103e-01	ci right 3.651738e-01	k: 3557	n:10000
Cons ci ratio: 2.459001e-02	ci left: 7.086644e-01	ci right 7.264087e-01	k: 7176	n:10000
KS ci ratio: 1.221246e-01	ci left: 8.766844e-02	ci right 9.916968e-02	k: 933	n:10000
OR2H2   10000 perm   2 sec   (5517 perm/sec)   p_kst 9.330000e-02   p_cons 7.176000e-01   p_joint 3.557000e-01

Joint ci ratio: 4.774225e-02	ci left: 2.460439e-01	ci right 2.581282e-01	k: 5041	n:20000
Cons ci ratio: 1.862208e-02	ci left: 6.825325e-01	ci right 6.954125e-01	k: 13780	n:20000
KS ci ratio: 8.577564e-02	ci left: 9.048006e-02	ci right 9.863825e-02	k: 1890	n:20000
OR2H2   20000 perm   4 sec   (4856 perm/sec)   p_kst 9.450000e-02   p_cons 6.890000e-01   p_joint 2.520500e-01

Outputting figure to mutsig2_images.part000000000121/OR2H2.3_943_20000_0.0945_0.689_0.25205.png
                gene_name: OR2H2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 49 percent done.
OR2J3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.795407e-03	ci left: 9.365128e-01	ci right 9.458281e-01	k: 9413	n:10000
Cons ci ratio: 3.115659e-02	ci left: 6.031711e-01	ci right 6.223632e-01	k: 6128	n:10000
KS ci ratio: 1.819289e-02	ci left: 8.151724e-01	ci right 8.302391e-01	k: 8228	n:10000
OR2J3   10000 perm   2 sec   (5502 perm/sec)   p_kst 8.228000e-01   p_cons 6.128000e-01   p_joint 9.413000e-01

Outputting figure to mutsig2_images.part000000000121/OR2J3.3_940_10000_0.8228_0.6128_0.9413.png
                gene_name: OR2J3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 51 percent done.
OR2L8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.360087e-02	ci left: 5.666442e-01	ci right 5.861113e-01	k: 5764	n:10000
KS ci ratio: 1.396686e-02	ci left: 8.810413e-01	ci right 8.935320e-01	k: 8874	n:10000
OR2L8   10000 perm   2 sec   (6449 perm/sec)   p_kst 8.874000e-01   p_cons 5.764000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2L8.3_943_10000_0.8874_0.5764_1.png
                gene_name: OR2L8
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
OR2M7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.927855e-01	ci left: 3.586235e-02	ci right 4.360871e-02	k: 396	n:10000
Cons ci ratio: 5.676458e-02	ci left: 3.136389e-01	ci right 3.320644e-01	k: 3228	n:10000
KS ci ratio: 4.258860e-01	ci left: 6.616170e-03	ci right 1.027885e-02	k: 83	n:10000
OR2M7   10000 perm   2 sec   (6425 perm/sec)   p_kst 8.300000e-03   p_cons 3.228000e-01   p_joint 3.960000e-02

Joint ci ratio: 2.321934e-01	ci left: 1.241764e-02	ci right 1.572585e-02	k: 280	n:20000
Cons ci ratio: 3.867525e-02	ci left: 3.327369e-01	ci right 3.459099e-01	k: 6786	n:20000
KS ci ratio: 3.136318e-01	ci left: 6.535562e-03	ci right 9.010769e-03	k: 154	n:20000
OR2M7   20000 perm   4 sec   (5372 perm/sec)   p_kst 7.700000e-03   p_cons 3.393000e-01   p_joint 1.400000e-02

Joint ci ratio: 1.388857e-01	ci left: 2.406758e-02	ci right 2.769170e-02	k: 775	n:30000
Cons ci ratio: 3.237749e-02	ci left: 3.228867e-01	ci right 3.335466e-01	k: 9846	n:30000
KS ci ratio: 2.536194e-01	ci left: 6.898193e-03	ci right 8.932175e-03	k: 236	n:30000
OR2M7   30000 perm   6 sec   (5059 perm/sec)   p_kst 7.866667e-03   p_cons 3.282000e-01   p_joint 2.583333e-02

Joint ci ratio: 1.396219e-01	ci left: 1.797425e-02	ci right 2.069616e-02	k: 772	n:40000
Cons ci ratio: 2.779412e-02	ci left: 3.274844e-01	ci right 3.367399e-01	k: 13284	n:40000
KS ci ratio: 2.071242e-01	ci left: 7.955470e-03	ci right 9.816879e-03	k: 354	n:40000
OR2M7   40000 perm   8 sec   (4890 perm/sec)   p_kst 8.850000e-03   p_cons 3.321000e-01   p_joint 1.930000e-02

Joint ci ratio: 8.926016e-02	ci left: 3.547980e-02	ci right 3.881421e-02	k: 1856	n:50000
Cons ci ratio: 2.488140e-02	ci left: 3.275929e-01	ci right 3.358666e-01	k: 16586	n:50000
KS ci ratio: 1.862664e-01	ci left: 7.961841e-03	ci right 9.615947e-03	k: 438	n:50000
OR2M7   50000 perm   11 sec   (4732 perm/sec)   p_kst 8.760000e-03   p_cons 3.317200e-01   p_joint 3.712000e-02

Joint ci ratio: 9.097204e-02	ci left: 2.864948e-02	ci right 3.139623e-02	k: 1800	n:60000
Cons ci ratio: 2.270361e-02	ci left: 3.281486e-01	ci right 3.357010e-01	k: 19915	n:60000
KS ci ratio: 1.695188e-01	ci left: 8.084167e-03	ci right 9.597249e-03	k: 529	n:60000
OR2M7   60000 perm   13 sec   (4610 perm/sec)   p_kst 8.816667e-03   p_cons 3.319167e-01   p_joint 3.000000e-02

Joint ci ratio: 9.529980e-02	ci left: 2.247416e-02	ci right 2.473700e-02	k: 1651	n:70000
Cons ci ratio: 2.099466e-02	ci left: 3.289529e-01	ci right 3.359467e-01	k: 23271	n:70000
KS ci ratio: 1.567311e-01	ci left: 8.162601e-03	ci right 9.564280e-03	k: 619	n:70000
OR2M7   70000 perm   15 sec   (4526 perm/sec)   p_kst 8.842857e-03   p_cons 3.324429e-01   p_joint 2.358571e-02

Joint ci ratio: 9.517934e-02	ci left: 1.977338e-02	ci right 2.176159e-02	k: 1660	n:80000
Cons ci ratio: 1.904163e-02	ci left: 3.429899e-01	ci right 3.495962e-01	k: 27703	n:80000
KS ci ratio: 1.485860e-01	ci left: 7.983811e-03	ci right 9.277202e-03	k: 689	n:80000
OR2M7   80000 perm   18 sec   (4357 perm/sec)   p_kst 8.612500e-03   p_cons 3.462875e-01   p_joint 2.075000e-02

Joint ci ratio: 9.009671e-02	ci left: 1.967107e-02	ci right 2.153779e-02	k: 1853	n:90000
Cons ci ratio: 1.793326e-02	ci left: 3.436678e-01	ci right 3.498977e-01	k: 31210	n:90000
KS ci ratio: 1.392091e-01	ci left: 8.125054e-03	ci right 9.351370e-03	k: 785	n:90000
OR2M7   90000 perm   21 sec   (4255 perm/sec)   p_kst 8.722222e-03   p_cons 3.467778e-01   p_joint 2.058889e-02

Joint ci ratio: 7.985507e-02	ci left: 2.258955e-02	ci right 2.447822e-02	k: 2352	n:100000
Cons ci ratio: 1.702571e-02	ci left: 3.434903e-01	ci right 3.493986e-01	k: 34644	n:100000
KS ci ratio: 1.380368e-01	ci left: 7.447511e-03	ci right 8.561310e-03	k: 799	n:100000
OR2M7   100000 perm   24 sec   (4177 perm/sec)   p_kst 7.990000e-03   p_cons 3.464400e-01   p_joint 2.352000e-02

Joint ci ratio: 7.893709e-02	ci left: 2.106101e-02	ci right 2.280069e-02	k: 2411	n:110000
Cons ci ratio: 1.623582e-02	ci left: 3.435604e-01	ci right 3.491931e-01	k: 38101	n:110000
KS ci ratio: 1.311629e-01	ci left: 7.525986e-03	ci right 8.591106e-03	k: 885	n:110000
OR2M7   110000 perm   28 sec   (3994 perm/sec)   p_kst 8.045455e-03   p_cons 3.463727e-01   p_joint 2.191818e-02

Joint ci ratio: 7.792964e-02	ci left: 1.984465e-02	ci right 2.146197e-02	k: 2477	n:120000
Cons ci ratio: 1.552570e-02	ci left: 3.442314e-01	ci right 3.496260e-01	k: 41631	n:120000
KS ci ratio: 1.265425e-01	ci left: 7.431071e-03	ci right 8.442927e-03	k: 951	n:120000
OR2M7   120000 perm   31 sec   (3881 perm/sec)   p_kst 7.925000e-03   p_cons 3.469250e-01   p_joint 2.064167e-02

Joint ci ratio: 6.570018e-02	ci left: 2.577743e-02	ci right 2.753607e-02	k: 3464	n:130000
Cons ci ratio: 1.491265e-02	ci left: 3.444581e-01	ci right 3.496411e-01	k: 45116	n:130000
KS ci ratio: 1.208907e-01	ci left: 7.537817e-03	ci right 8.515088e-03	k: 1042	n:130000
OR2M7   130000 perm   34 sec   (3824 perm/sec)   p_kst 8.015385e-03   p_cons 3.470462e-01   p_joint 2.664615e-02

Joint ci ratio: 6.700411e-02	ci left: 2.306407e-02	ci right 2.467002e-02	k: 3340	n:140000
Cons ci ratio: 1.437008e-02	ci left: 3.445561e-01	ci right 3.495503e-01	k: 48587	n:140000
KS ci ratio: 1.165577e-01	ci left: 7.546934e-03	ci right 8.487900e-03	k: 1121	n:140000
OR2M7   140000 perm   37 sec   (3740 perm/sec)   p_kst 8.007143e-03   p_cons 3.470500e-01   p_joint 2.385714e-02

Joint ci ratio: 7.378997e-02	ci left: 1.778479e-02	ci right 1.915391e-02	k: 2769	n:150000
Cons ci ratio: 1.431081e-02	ci left: 3.310342e-01	ci right 3.358123e-01	k: 50013	n:150000
KS ci ratio: 1.122363e-01	ci left: 7.613702e-03	ci right 8.525467e-03	k: 1209	n:150000
OR2M7   150000 perm   41 sec   (3682 perm/sec)   p_kst 8.060000e-03   p_cons 3.334200e-01   p_joint 1.846000e-02

Joint ci ratio: 6.725049e-02	ci left: 2.009399e-02	ci right 2.149845e-02	k: 3326	n:160000
Cons ci ratio: 1.387711e-02	ci left: 3.304473e-01	ci right 3.350712e-01	k: 53241	n:160000
KS ci ratio: 1.081944e-01	ci left: 7.697014e-03	ci right 8.583448e-03	k: 1301	n:160000
OR2M7   160000 perm   44 sec   (3632 perm/sec)   p_kst 8.131250e-03   p_cons 3.327562e-01   p_joint 2.078750e-02

Joint ci ratio: 6.694443e-02	ci left: 1.910830e-02	ci right 2.043756e-02	k: 3360	n:170000
Cons ci ratio: 1.346146e-02	ci left: 3.305599e-01	ci right 3.350458e-01	k: 56576	n:170000
KS ci ratio: 1.051702e-01	ci left: 7.679375e-03	ci right 8.537527e-03	k: 1377	n:170000
OR2M7   170000 perm   48 sec   (3541 perm/sec)   p_kst 8.100000e-03   p_cons 3.328000e-01   p_joint 1.976471e-02

Joint ci ratio: 6.344660e-02	ci left: 2.010737e-02	ci right 2.143035e-02	k: 3737	n:180000
Cons ci ratio: 1.308023e-02	ci left: 3.306896e-01	ci right 3.350491e-01	k: 59916	n:180000
KS ci ratio: 1.022092e-01	ci left: 7.691076e-03	ci right 8.524883e-03	k: 1458	n:180000
OR2M7   180000 perm   52 sec   (3473 perm/sec)   p_kst 8.100000e-03   p_cons 3.328667e-01   p_joint 2.076111e-02

Joint ci ratio: 4.600897e-02	ci left: 3.595268e-02	ci right 3.765096e-02	k: 6991	n:190000
Cons ci ratio: 1.234221e-02	ci left: 3.446544e-01	ci right 3.489398e-01	k: 65891	n:190000
KS ci ratio: 9.961546e-02	ci left: 7.681315e-03	ci right 8.491696e-03	k: 1535	n:190000
OR2M7   190000 perm   55 sec   (3426 perm/sec)   p_kst 8.078947e-03   p_cons 3.467947e-01   p_joint 3.679474e-02

Outputting figure to mutsig2_images.part000000000121/OR2M7.3_943_190000_0.0080789_0.34679_0.036795.png
                gene_name: OR2M7
               theta_stop: 0.100 
                    nperm: 190000 
                     p_ks: 0.0081 
        ci_ks_bounds_left: 0.0077 
       ci_ks_bounds_right: 0.0085 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.038 

Current progress: 54 percent done.
OR2T12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.133354e-02	ci left: 7.631424e-01	ci right 7.796992e-01	k: 7715	n:10000
KS ci ratio: 2.987749e-02	ci left: 6.229630e-01	ci right 6.419597e-01	k: 6325	n:10000
OR2T12   10000 perm   2 sec   (5525 perm/sec)   p_kst 6.325000e-01   p_cons 7.715000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2T12.3_967_10000_0.6325_0.7715_1.png
                gene_name: OR2T12
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
OR2T4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.233008e-02	ci left: 7.464469e-01	ci right 7.634043e-01	k: 7550	n:10000
Cons ci ratio: 3.282282e-02	ci left: 5.780780e-01	ci right 5.974708e-01	k: 5878	n:10000
KS ci ratio: 4.762296e-02	ci left: 3.941625e-01	ci right 4.134936e-01	k: 4038	n:10000
OR2T4   10000 perm   2 sec   (6376 perm/sec)   p_kst 4.038000e-01   p_cons 5.878000e-01   p_joint 7.550000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T4.3_1051_10000_0.4038_0.5878_0.755.png
                gene_name: OR2T4
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 57 percent done.
OR4A16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.390683e-01	ci left: 6.846013e-02	ci right 7.878990e-02	k: 735	n:10000
Cons ci ratio: 2.353098e-01	ci left: 2.381734e-02	ci right 3.026216e-02	k: 269	n:10000
KS ci ratio: 4.296414e-02	ci left: 4.444059e-01	ci right 4.640208e-01	k: 4542	n:10000
OR4A16   10000 perm   2 sec   (4615 perm/sec)   p_kst 4.542000e-01   p_cons 2.690000e-02   p_joint 7.350000e-02

Joint ci ratio: 9.138306e-02	ci left: 8.038716e-02	ci right 8.813421e-02	k: 1684	n:20000
Cons ci ratio: 1.643708e-01	ci left: 2.537344e-02	ci right 2.996526e-02	k: 552	n:20000
KS ci ratio: 3.027274e-02	ci left: 4.490792e-01	ci right 4.629336e-01	k: 9120	n:20000
OR4A16   20000 perm   5 sec   (4175 perm/sec)   p_kst 4.560000e-01   p_cons 2.760000e-02   p_joint 8.420000e-02

Joint ci ratio: 6.422225e-02	ci left: 1.069078e-01	ci right 1.140345e-01	k: 3313	n:30000
Cons ci ratio: 1.336716e-01	ci left: 2.600110e-02	ci right 2.975775e-02	k: 835	n:30000
KS ci ratio: 2.477814e-02	ci left: 4.491532e-01	ci right 4.604556e-01	k: 13644	n:30000
OR4A16   30000 perm   7 sec   (4154 perm/sec)   p_kst 4.548000e-01   p_cons 2.783333e-02   p_joint 1.104333e-01

Joint ci ratio: 6.094724e-02	ci left: 9.086129e-02	ci right 9.659785e-02	k: 3748	n:40000
Cons ci ratio: 1.148481e-01	ci left: 2.667242e-02	ci right 2.994654e-02	k: 1131	n:40000
KS ci ratio: 2.146962e-02	ci left: 4.496613e-01	ci right 4.594453e-01	k: 18182	n:40000
OR4A16   40000 perm   9 sec   (4221 perm/sec)   p_kst 4.545500e-01   p_cons 2.827500e-02   p_joint 9.370000e-02

Joint ci ratio: 5.628850e-02	ci left: 8.592571e-02	ci right 9.092219e-02	k: 4420	n:50000
Cons ci ratio: 1.021676e-01	ci left: 2.713693e-02	ci right 3.007814e-02	k: 1429	n:50000
KS ci ratio: 1.919660e-02	ci left: 4.503481e-01	ci right 4.590971e-01	k: 22736	n:50000
OR4A16   50000 perm   12 sec   (4232 perm/sec)   p_kst 4.547200e-01   p_cons 2.858000e-02   p_joint 8.840000e-02

Joint ci ratio: 5.858644e-02	ci left: 6.739552e-02	ci right 7.147958e-02	k: 4165	n:60000
Cons ci ratio: 8.876060e-02	ci left: 3.008417e-02	ci right 3.289473e-02	k: 1888	n:60000
KS ci ratio: 1.752305e-02	ci left: 4.507596e-01	ci right 4.587448e-01	k: 27285	n:60000
OR4A16   60000 perm   14 sec   (4213 perm/sec)   p_kst 4.547500e-01   p_cons 3.146667e-02   p_joint 6.941667e-02

Outputting figure to mutsig2_images.part000000000121/OR4A16.3_991_60000_0.45475_0.031467_0.069417.png
                gene_name: OR4A16
               theta_stop: 0.089 
                    nperm: 60000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.071 

Current progress: 58 percent done.
OR4C12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.939054e-02	ci left: 4.876522e-01	ci right 5.073492e-01	k: 4975	n:10000
Cons ci ratio: 3.532443e-02	ci left: 5.419890e-01	ci right 5.615808e-01	k: 5518	n:10000
KS ci ratio: 5.664796e-02	ci left: 3.145320e-01	ci right 3.329708e-01	k: 3237	n:10000
OR4C12   10000 perm   2 sec   (6123 perm/sec)   p_kst 3.237000e-01   p_cons 5.518000e-01   p_joint 4.975000e-01

Outputting figure to mutsig2_images.part000000000121/OR4C12.3_934_10000_0.3237_0.5518_0.4975.png
                gene_name: OR4C12
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 59 percent done.
OR4C6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.565379e-02	ci left: 2.540943e-01	ci right 2.714441e-01	k: 2627	n:10000
Cons ci ratio: 1.621032e-02	ci left: 8.469262e-01	ci right 8.608669e-01	k: 8540	n:10000
KS ci ratio: 9.759937e-02	ci left: 1.320796e-01	ci right 1.457315e-01	k: 1388	n:10000
OR4C6   10000 perm   1 sec   (6944 perm/sec)   p_kst 1.388000e-01   p_cons 8.540000e-01   p_joint 2.627000e-01

Outputting figure to mutsig2_images.part000000000121/OR4C6.3_934_10000_0.1388_0.854_0.2627.png
                gene_name: OR4C6
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 61 percent done.
OR4D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.763965e-02	ci left: 6.585713e-01	ci right 6.771308e-01	k: 6679	n:10000
Cons ci ratio: 4.074522e-02	ci left: 4.707644e-01	ci right 4.904469e-01	k: 4806	n:10000
KS ci ratio: 3.906893e-02	ci left: 4.917510e-01	ci right 5.114481e-01	k: 5016	n:10000
OR4D1   10000 perm   2 sec   (5871 perm/sec)   p_kst 5.016000e-01   p_cons 4.806000e-01   p_joint 6.679000e-01

Outputting figure to mutsig2_images.part000000000121/OR4D1.3_937_10000_0.5016_0.4806_0.6679.png
                gene_name: OR4D1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 62 percent done.
OR4D11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.277146e-02	ci left: 2.166492e-01	ci right 2.331114e-01	k: 2248	n:10000
Cons ci ratio: 1.362938e-02	ci left: 8.859570e-01	ci right 8.982135e-01	k: 8922	n:10000
KS ci ratio: 1.053044e-01	ci left: 1.152552e-01	ci right 1.281660e-01	k: 1216	n:10000
OR4D11   10000 perm   2 sec   (5987 perm/sec)   p_kst 1.216000e-01   p_cons 8.922000e-01   p_joint 2.248000e-01

Joint ci ratio: 5.304270e-02	ci left: 2.087785e-01	ci right 2.202046e-01	k: 4289	n:20000
Cons ci ratio: 9.558395e-03	ci left: 8.893969e-01	ci right 8.979883e-01	k: 17875	n:20000
KS ci ratio: 7.458496e-02	ci left: 1.168056e-01	ci right 1.259048e-01	k: 2426	n:20000
OR4D11   20000 perm   4 sec   (5327 perm/sec)   p_kst 1.213000e-01   p_cons 8.937500e-01   p_joint 2.144500e-01

Outputting figure to mutsig2_images.part000000000121/OR4D11.3_940_20000_0.1213_0.89375_0.21445.png
                gene_name: OR4D11
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 64 percent done.
OR4D5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.187168e-02	ci left: 4.571824e-01	ci right 4.768369e-01	k: 4670	n:10000
Cons ci ratio: 6.089172e-02	ci left: 2.839917e-01	ci right 3.019291e-01	k: 2929	n:10000
KS ci ratio: 4.569037e-02	ci left: 4.141877e-01	ci right 4.336567e-01	k: 4239	n:10000
OR4D5   10000 perm   2 sec   (5784 perm/sec)   p_kst 4.239000e-01   p_cons 2.929000e-01   p_joint 4.670000e-01

Outputting figure to mutsig2_images.part000000000121/OR4D5.3_961_10000_0.4239_0.2929_0.467.png
                gene_name: OR4D5
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 65 percent done.
OR4D6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.575415e-03	ci left: 9.943270e-01	ci right 9.969714e-01	k: 9958	n:10000
KS ci ratio: 3.472158e-02	ci left: 5.505053e-01	ci right 5.700595e-01	k: 5603	n:10000
OR4D6   10000 perm   2 sec   (5993 perm/sec)   p_kst 5.603000e-01   p_cons 9.958000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR4D6.3_949_10000_0.5603_0.9958_1.png
                gene_name: OR4D6
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
OR2A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.289058e-02	ci left: 5.770748e-01	ci right 5.964746e-01	k: 5868	n:10000
Cons ci ratio: 4.454027e-02	ci left: 4.266495e-01	ci right 4.461876e-01	k: 4364	n:10000
KS ci ratio: 3.976252e-02	ci left: 4.829545e-01	ci right 5.026497e-01	k: 4928	n:10000
OR2A2   10000 perm   2 sec   (6214 perm/sec)   p_kst 4.928000e-01   p_cons 4.364000e-01   p_joint 5.868000e-01

Outputting figure to mutsig2_images.part000000000121/OR2A2.2_961_10000_0.4928_0.4364_0.5868.png
                gene_name: OR2A2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 68 percent done.
OR2A25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.855977e-02	ci left: 8.091780e-01	ci right 8.244370e-01	k: 8169	n:10000
KS ci ratio: 4.710281e-02	ci left: 3.994411e-01	ci right 4.188118e-01	k: 4091	n:10000
OR2A25   10000 perm   2 sec   (5827 perm/sec)   p_kst 4.091000e-01   p_cons 8.169000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2A25.2_937_10000_0.4091_0.8169_1.png
                gene_name: OR2A25
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
OR2AG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.744543e-02	ci left: 3.959551e-01	ci right 4.152999e-01	k: 4056	n:10000
Cons ci ratio: 5.965125e-02	ci left: 2.925144e-01	ci right 3.106013e-01	k: 3015	n:10000
KS ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
OR2AG1   10000 perm   2 sec   (6069 perm/sec)   p_kst 3.297000e-01   p_cons 3.015000e-01   p_joint 4.056000e-01

Outputting figure to mutsig2_images.part000000000121/OR2AG1.2_955_10000_0.3297_0.3015_0.4056.png
                gene_name: OR2AG1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 71 percent done.
OR2AK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.264263e-01	ci left: 8.212963e-02	ci right 9.331191e-02	k: 876	n:10000
Cons ci ratio: 1.393752e-01	ci left: 6.816984e-02	ci right 7.848038e-02	k: 732	n:10000
KS ci ratio: 3.350465e-02	ci left: 5.680480e-01	ci right 5.875066e-01	k: 5778	n:10000
OR2AK2   10000 perm   2 sec   (5678 perm/sec)   p_kst 5.778000e-01   p_cons 7.320000e-02   p_joint 8.760000e-02

Joint ci ratio: 9.688928e-02	ci left: 7.197315e-02	ci right 7.935078e-02	k: 1512	n:20000
Cons ci ratio: 9.855520e-02	ci left: 6.967630e-02	ci right 7.694833e-02	k: 1465	n:20000
KS ci ratio: 2.392663e-02	ci left: 5.661095e-01	ci right 5.798692e-01	k: 11460	n:20000
OR2AK2   20000 perm   4 sec   (5027 perm/sec)   p_kst 5.730000e-01   p_cons 7.325000e-02   p_joint 7.560000e-02

Outputting figure to mutsig2_images.part000000000121/OR2AK2.2_1012_20000_0.573_0.07325_0.0756.png
                gene_name: OR2AK2
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.079 

Current progress: 72 percent done.
OR2B6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.340178e-02	ci left: 5.695523e-01	ci right 5.890015e-01	k: 5793	n:10000
Cons ci ratio: 4.765264e-02	ci left: 3.938637e-01	ci right 4.131925e-01	k: 4035	n:10000
KS ci ratio: 5.895076e-02	ci left: 2.974712e-01	ci right 3.156416e-01	k: 3065	n:10000
OR2B6   10000 perm   2 sec   (5863 perm/sec)   p_kst 3.065000e-01   p_cons 4.035000e-01   p_joint 5.793000e-01

Outputting figure to mutsig2_images.part000000000121/OR2B6.2_946_10000_0.3065_0.4035_0.5793.png
                gene_name: OR2B6
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 74 percent done.
OR2C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.304386e-02	ci left: 2.153664e-01	ci right 2.317949e-01	k: 2235	n:10000
Cons ci ratio: 1.114414e-01	ci left: 1.039317e-01	ci right 1.162965e-01	k: 1100	n:10000
KS ci ratio: 3.503264e-02	ci left: 5.460965e-01	ci right 5.656709e-01	k: 5559	n:10000
OR2C3   10000 perm   2 sec   (5355 perm/sec)   p_kst 5.559000e-01   p_cons 1.100000e-01   p_joint 2.235000e-01

Joint ci ratio: 5.948366e-02	ci left: 1.730667e-01	ci right 1.837270e-01	k: 3567	n:20000
Cons ci ratio: 7.892335e-02	ci left: 1.054499e-01	ci right 1.141639e-01	k: 2195	n:20000
KS ci ratio: 2.497218e-02	ci left: 5.450258e-01	ci right 5.588590e-01	k: 11039	n:20000
OR2C3   20000 perm   4 sec   (4695 perm/sec)   p_kst 5.519500e-01   p_cons 1.097500e-01   p_joint 1.783500e-01

Outputting figure to mutsig2_images.part000000000121/OR2C3.2_967_20000_0.55195_0.10975_0.17835.png
                gene_name: OR2C3
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 75 percent done.
OR2D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.863384e-02	ci left: 4.973503e-01	ci right 5.170455e-01	k: 5072	n:10000
Cons ci ratio: 3.142636e-02	ci left: 5.990540e-01	ci right 6.182826e-01	k: 6087	n:10000
KS ci ratio: 5.310533e-02	ci left: 3.432297e-01	ci right 3.620562e-01	k: 3526	n:10000
OR2D2   10000 perm   2 sec   (6551 perm/sec)   p_kst 3.526000e-01   p_cons 6.087000e-01   p_joint 5.072000e-01

Outputting figure to mutsig2_images.part000000000121/OR2D2.2_931_10000_0.3526_0.6087_0.5072.png
                gene_name: OR2D2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 77 percent done.
OR2F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.429909e-02	ci left: 7.135091e-01	ci right 7.311612e-01	k: 7224	n:10000
KS ci ratio: 3.657006e-02	ci left: 5.247648e-01	ci right 5.444151e-01	k: 5346	n:10000
OR2F2   10000 perm   2 sec   (5264 perm/sec)   p_kst 5.346000e-01   p_cons 7.224000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2F2.2_958_10000_0.5346_0.7224_1.png
                gene_name: OR2F2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
OR2G3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.340906e-02	ci left: 3.406464e-01	ci right 3.594411e-01	k: 3500	n:10000
Cons ci ratio: 7.618985e-02	ci left: 2.012637e-01	ci right 2.173060e-01	k: 2092	n:10000
KS ci ratio: 2.545351e-02	ci left: 6.943394e-01	ci right 7.123420e-01	k: 7034	n:10000
OR2G3   10000 perm   1 sec   (6871 perm/sec)   p_kst 7.034000e-01   p_cons 2.092000e-01   p_joint 3.500000e-01

Outputting figure to mutsig2_images.part000000000121/OR2G3.2_934_10000_0.7034_0.2092_0.35.png
                gene_name: OR2G3
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 80 percent done.
OR2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.729419e-02	ci left: 8.297144e-01	ci right 8.442887e-01	k: 8371	n:10000
KS ci ratio: 5.657045e-02	ci left: 3.151274e-01	ci right 3.335750e-01	k: 3243	n:10000
OR2L2   10000 perm   2 sec   (6616 perm/sec)   p_kst 3.243000e-01   p_cons 8.371000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2L2.2_943_10000_0.3243_0.8371_1.png
                gene_name: OR2L2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
OR2T10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.725901e-02	ci left: 5.154566e-01	ci right 5.351287e-01	k: 5253	n:10000
KS ci ratio: 1.407835e-02	ci left: 8.794036e-01	ci right 8.919707e-01	k: 8858	n:10000
OR2T10   10000 perm   1 sec   (6939 perm/sec)   p_kst 8.858000e-01   p_cons 5.253000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR2T10.2_943_10000_0.8858_0.5253_1.png
                gene_name: OR2T10
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
OR2T2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.052390e-02	ci left: 1.507053e-01	ci right 1.650946e-01	k: 1578	n:10000
Cons ci ratio: 1.049122e-01	ci left: 1.160369e-01	ci right 1.289839e-01	k: 1224	n:10000
KS ci ratio: 4.489509e-02	ci left: 4.227607e-01	ci right 4.422786e-01	k: 4325	n:10000
OR2T2   10000 perm   1 sec   (6887 perm/sec)   p_kst 4.325000e-01   p_cons 1.224000e-01   p_joint 1.578000e-01

Joint ci ratio: 4.234069e-02	ci left: 2.936037e-01	ci right 3.063545e-01	k: 5999	n:20000
Cons ci ratio: 7.446280e-02	ci left: 1.171500e-01	ci right 1.262603e-01	k: 2433	n:20000
KS ci ratio: 3.174521e-02	ci left: 4.256690e-01	ci right 4.394506e-01	k: 8651	n:20000
OR2T2   20000 perm   3 sec   (5883 perm/sec)   p_kst 4.325500e-01   p_cons 1.216500e-01   p_joint 2.999500e-01

Outputting figure to mutsig2_images.part000000000121/OR2T2.2_979_20000_0.43255_0.12165_0.29995.png
                gene_name: OR2T2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 84 percent done.
OR2T27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.183805e-02	ci left: 4.575817e-01	ci right 4.772373e-01	k: 4674	n:10000
Cons ci ratio: 7.499060e-02	ci left: 2.064889e-01	ci right 2.226777e-01	k: 2145	n:10000
KS ci ratio: 6.688109e-03	ci left: 9.683648e-01	ci right 9.749566e-01	k: 9718	n:10000
OR2T27   10000 perm   2 sec   (6628 perm/sec)   p_kst 9.718000e-01   p_cons 2.145000e-01   p_joint 4.674000e-01

Outputting figure to mutsig2_images.part000000000121/OR2T27.2_958_10000_0.9718_0.2145_0.4674.png
                gene_name: OR2T27
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 86 percent done.
OR2W3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.657045e-02	ci left: 3.151274e-01	ci right 3.335750e-01	k: 3243	n:10000
Cons ci ratio: 5.602013e-02	ci left: 3.193950e-01	ci right 3.379049e-01	k: 3286	n:10000
KS ci ratio: 3.979435e-02	ci left: 4.825547e-01	ci right 5.022497e-01	k: 4924	n:10000
OR2W3   10000 perm   2 sec   (6273 perm/sec)   p_kst 4.924000e-01   p_cons 3.286000e-01   p_joint 3.243000e-01

Outputting figure to mutsig2_images.part000000000121/OR2W3.2_949_10000_0.4924_0.3286_0.3243.png
                gene_name: OR2W3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 87 percent done.
OR2W5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.440648e-02	ci left: 2.615144e-01	ci right 2.790196e-01	k: 2702	n:10000
Cons ci ratio: 7.523615e-02	ci left: 2.054042e-01	ci right 2.215630e-01	k: 2134	n:10000
KS ci ratio: 2.027211e-02	ci left: 7.808694e-01	ci right 7.969620e-01	k: 7890	n:10000
OR2W5   10000 perm   2 sec   (5521 perm/sec)   p_kst 7.890000e-01   p_cons 2.134000e-01   p_joint 2.702000e-01

Outputting figure to mutsig2_images.part000000000121/OR2W5.2_967_10000_0.789_0.2134_0.2702.png
                gene_name: OR2W5
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 88 percent done.
OR2Y1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.640872e-02	ci left: 5.269672e-01	ci right 5.466113e-01	k: 5368	n:10000
Cons ci ratio: 5.903404e-02	ci left: 2.968763e-01	ci right 3.150368e-01	k: 3059	n:10000
KS ci ratio: 1.716727e-02	ci left: 8.317498e-01	ci right 8.462521e-01	k: 8391	n:10000
OR2Y1   10000 perm   2 sec   (6300 perm/sec)   p_kst 8.391000e-01   p_cons 3.059000e-01   p_joint 5.368000e-01

Outputting figure to mutsig2_images.part000000000121/OR2Y1.2_940_10000_0.8391_0.3059_0.5368.png
                gene_name: OR2Y1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 90 percent done.
OR2Z1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.057738e-02	ci left: 9.270955e-01	ci right 9.370510e-01	k: 9322	n:10000
Cons ci ratio: 2.366395e-02	ci left: 7.241112e-01	ci right 7.415529e-01	k: 7329	n:10000
KS ci ratio: 7.492393e-02	ci left: 2.067847e-01	ci right 2.229817e-01	k: 2148	n:10000
OR2Z1   10000 perm   1 sec   (6899 perm/sec)   p_kst 2.148000e-01   p_cons 7.329000e-01   p_joint 9.322000e-01

Outputting figure to mutsig2_images.part000000000121/OR2Z1.2_949_10000_0.2148_0.7329_0.9322.png
                gene_name: OR2Z1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 91 percent done.
OR3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.489098e-02	ci left: 5.481004e-01	ci right 5.676658e-01	k: 5579	n:10000
Cons ci ratio: 6.108332e-02	ci left: 2.827037e-01	ci right 3.006178e-01	k: 2916	n:10000
KS ci ratio: 3.605879e-02	ci left: 5.317732e-01	ci right 5.514025e-01	k: 5416	n:10000
OR3A1   10000 perm   2 sec   (6046 perm/sec)   p_kst 5.416000e-01   p_cons 2.916000e-01   p_joint 5.579000e-01

Outputting figure to mutsig2_images.part000000000121/OR3A1.2_951_10000_0.5416_0.2916_0.5579.png
                gene_name: OR3A1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 93 percent done.
OR3A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.529567e-01	ci left: 3.627180e-03	ci right 6.472945e-03	k: 49	n:10000
Cons ci ratio: 2.760851e-02	ci left: 6.590747e-01	ci right 6.776271e-01	k: 6684	n:10000
KS ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
OR3A3   10000 perm   2 sec   (6553 perm/sec)   p_kst 1.700000e-03   p_cons 6.684000e-01   p_joint 4.900000e-03

Joint ci ratio: 6.818042e-01	ci left: 1.094648e-03	ci right 2.257979e-03	k: 32	n:20000
Cons ci ratio: 2.085346e-02	ci left: 6.318471e-01	ci right 6.452126e-01	k: 12771	n:20000
KS ci ratio: 6.042186e-01	ci left: 1.471505e-03	ci right 2.780040e-03	k: 41	n:20000
OR3A3   20000 perm   4 sec   (5647 perm/sec)   p_kst 2.050000e-03   p_cons 6.385500e-01   p_joint 1.600000e-03

Joint ci ratio: 5.055551e-01	ci left: 1.497445e-03	ci right 2.536133e-03	k: 59	n:30000
Cons ci ratio: 1.694414e-02	ci left: 6.353409e-01	ci right 6.462318e-01	k: 19224	n:30000
KS ci ratio: 5.142149e-01	ci left: 1.439349e-03	ci right 2.460979e-03	k: 57	n:30000
OR3A3   30000 perm   6 sec   (5314 perm/sec)   p_kst 1.900000e-03   p_cons 6.408000e-01   p_joint 1.966667e-03

Joint ci ratio: 3.419265e-01	ci left: 2.716059e-03	ci right 3.857935e-03	k: 130	n:40000
Cons ci ratio: 1.377000e-02	ci left: 6.648906e-01	ci right 6.741347e-01	k: 26781	n:40000
KS ci ratio: 4.615547e-01	ci left: 1.386542e-03	ci right 2.238401e-03	k: 71	n:40000
OR3A3   40000 perm   8 sec   (5114 perm/sec)   p_kst 1.775000e-03   p_cons 6.695250e-01   p_joint 3.250000e-03

Joint ci ratio: 3.065342e-01	ci left: 2.760914e-03	ci right 3.778109e-03	k: 162	n:50000
Cons ci ratio: 1.233538e-02	ci left: 6.646951e-01	ci right 6.729653e-01	k: 33442	n:50000
KS ci ratio: 4.061028e-01	ci left: 1.483550e-03	ci right 2.256126e-03	k: 92	n:50000
OR3A3   50000 perm   10 sec   (4957 perm/sec)   p_kst 1.840000e-03   p_cons 6.688400e-01   p_joint 3.240000e-03

Joint ci ratio: 1.960856e-01	ci left: 5.967726e-03	ci right 7.280681e-03	k: 396	n:60000
Cons ci ratio: 1.125233e-02	ci left: 6.653854e-01	ci right 6.729316e-01	k: 40150	n:60000
KS ci ratio: 3.768594e-01	ci left: 1.461708e-03	ci right 2.154575e-03	k: 107	n:60000
OR3A3   60000 perm   12 sec   (4822 perm/sec)   p_kst 1.783333e-03   p_cons 6.691667e-01   p_joint 6.600000e-03

Joint ci ratio: 1.712625e-01	ci left: 6.792125e-03	ci right 8.077783e-03	k: 519	n:70000
Cons ci ratio: 1.042662e-02	ci left: 6.652851e-01	ci right 6.722724e-01	k: 46815	n:70000
KS ci ratio: 3.383097e-01	ci left: 1.591065e-03	ci right 2.251319e-03	k: 133	n:70000
OR3A3   70000 perm   15 sec   (4700 perm/sec)   p_kst 1.900000e-03   p_cons 6.687857e-01   p_joint 7.414286e-03

Joint ci ratio: 1.574599e-01	ci left: 7.081917e-03	ci right 8.304192e-03	k: 614	n:80000
Cons ci ratio: 9.752907e-03	ci left: 6.655263e-01	ci right 6.720614e-01	k: 53504	n:80000
KS ci ratio: 3.105652e-01	ci left: 1.679288e-03	ci right 2.307707e-03	k: 158	n:80000
OR3A3   80000 perm   17 sec   (4597 perm/sec)   p_kst 1.975000e-03   p_cons 6.688000e-01   p_joint 7.675000e-03

Joint ci ratio: 1.472662e-01	ci left: 7.235610e-03	ci right 8.396451e-03	k: 702	n:90000
Cons ci ratio: 9.182919e-03	ci left: 6.663045e-01	ci right 6.724624e-01	k: 60245	n:90000
KS ci ratio: 2.951904e-01	ci left: 1.667243e-03	ci right 2.254491e-03	k: 175	n:90000
OR3A3   90000 perm   20 sec   (4501 perm/sec)   p_kst 1.944444e-03   p_cons 6.693889e-01   p_joint 7.800000e-03

Joint ci ratio: 1.545758e-01	ci left: 5.895882e-03	ci right 6.893074e-03	k: 638	n:100000
Cons ci ratio: 8.698680e-03	ci left: 6.671259e-01	ci right 6.729643e-01	k: 67005	n:100000
KS ci ratio: 2.797241e-01	ci left: 1.686111e-03	ci right 2.243411e-03	k: 195	n:100000
OR3A3   100000 perm   23 sec   (4408 perm/sec)   p_kst 1.950000e-03   p_cons 6.700500e-01   p_joint 6.380000e-03

Joint ci ratio: 1.934700e-01	ci left: 3.358449e-03	ci right 4.086284e-03	k: 408	n:110000
Cons ci ratio: 8.831511e-03	ci left: 6.388672e-01	ci right 6.445435e-01	k: 70588	n:110000
KS ci ratio: 2.658431e-01	ci left: 1.710691e-03	ci right 2.243388e-03	k: 216	n:110000
OR3A3   110000 perm   25 sec   (4321 perm/sec)   p_kst 1.963636e-03   p_cons 6.417091e-01   p_joint 3.709091e-03

Joint ci ratio: 1.513600e-01	ci left: 5.137484e-03	ci right 5.986680e-03	k: 666	n:120000
Cons ci ratio: 8.458919e-03	ci left: 6.388042e-01	ci right 6.442390e-01	k: 76983	n:120000
KS ci ratio: 2.543787e-01	ci left: 1.723940e-03	ci right 2.233942e-03	k: 236	n:120000
OR3A3   120000 perm   28 sec   (4227 perm/sec)   p_kst 1.966667e-03   p_cons 6.415250e-01   p_joint 5.550000e-03

Joint ci ratio: 1.785914e-01	ci left: 3.362522e-03	ci right 4.029149e-03	k: 479	n:130000
Cons ci ratio: 8.129960e-03	ci left: 6.387475e-01	ci right 6.439693e-01	k: 83377	n:130000
KS ci ratio: 2.428639e-01	ci left: 1.757238e-03	ci right 2.250015e-03	k: 259	n:130000
OR3A3   130000 perm   31 sec   (4143 perm/sec)   p_kst 1.992308e-03   p_cons 6.413615e-01   p_joint 3.684615e-03

Joint ci ratio: 1.987312e-01	ci left: 2.496031e-03	ci right 3.053451e-03	k: 387	n:140000
Cons ci ratio: 7.844525e-03	ci left: 6.382375e-01	ci right 6.432710e-01	k: 89706	n:140000
KS ci ratio: 2.340296e-01	ci left: 1.766047e-03	ci right 2.240673e-03	k: 279	n:140000
OR3A3   140000 perm   34 sec   (4066 perm/sec)   p_kst 1.992857e-03   p_cons 6.407571e-01   p_joint 2.764286e-03

Joint ci ratio: 1.430673e-01	ci left: 4.623602e-03	ci right 5.342404e-03	k: 746	n:150000
Cons ci ratio: 7.571136e-03	ci left: 6.387733e-01	ci right 6.436346e-01	k: 96181	n:150000
KS ci ratio: 2.245987e-01	ci left: 1.799126e-03	ci right 2.260463e-03	k: 303	n:150000
OR3A3   150000 perm   38 sec   (3986 perm/sec)   p_kst 2.020000e-03   p_cons 6.412067e-01   p_joint 4.973333e-03

Joint ci ratio: 1.211580e-01	ci left: 6.106019e-03	ci right 6.899522e-03	k: 1039	n:160000
Cons ci ratio: 7.327345e-03	ci left: 6.390632e-01	ci right 6.437692e-01	k: 102627	n:160000
KS ci ratio: 2.199502e-01	ci left: 1.763403e-03	ci right 2.204955e-03	k: 316	n:160000
OR3A3   160000 perm   41 sec   (3911 perm/sec)   p_kst 1.975000e-03   p_cons 6.414188e-01   p_joint 6.493750e-03

Joint ci ratio: 1.577830e-01	ci left: 3.332151e-03	ci right 3.908510e-03	k: 614	n:170000
Cons ci ratio: 7.111134e-03	ci left: 6.389676e-01	ci right 6.435334e-01	k: 109013	n:170000
KS ci ratio: 2.120663e-01	ci left: 1.793218e-03	ci right 2.224049e-03	k: 340	n:170000
OR3A3   170000 perm   44 sec   (3831 perm/sec)   p_kst 2.000000e-03   p_cons 6.412529e-01   p_joint 3.611765e-03

Joint ci ratio: 1.535954e-01	ci left: 3.328562e-03	ci right 3.887613e-03	k: 648	n:180000
Cons ci ratio: 6.909574e-03	ci left: 6.391127e-01	ci right 6.435495e-01	k: 115440	n:180000
KS ci ratio: 2.072620e-01	ci left: 1.777815e-03	ci right 2.194042e-03	k: 356	n:180000
OR3A3   180000 perm   48 sec   (3759 perm/sec)   p_kst 1.977778e-03   p_cons 6.413333e-01   p_joint 3.600000e-03

Joint ci ratio: 1.487440e-01	ci left: 3.371136e-03	ci right 3.917864e-03	k: 691	n:190000
Cons ci ratio: 6.726929e-03	ci left: 6.390596e-01	ci right 6.433782e-01	k: 121832	n:190000
KS ci ratio: 2.001001e-01	ci left: 1.814114e-03	ci right 2.222372e-03	k: 382	n:190000
OR3A3   190000 perm   51 sec   (3704 perm/sec)   p_kst 2.010526e-03   p_cons 6.412211e-01   p_joint 3.636842e-03

Joint ci ratio: 1.450198e-01	ci left: 3.375965e-03	ci right 3.908581e-03	k: 727	n:200000
Cons ci ratio: 6.559038e-03	ci left: 6.389432e-01	ci right 6.431527e-01	k: 128210	n:200000
KS ci ratio: 1.929250e-01	ci left: 1.861280e-03	ci right 2.263371e-03	k: 411	n:200000
OR3A3   200000 perm   55 sec   (3650 perm/sec)   p_kst 2.055000e-03   p_cons 6.410500e-01   p_joint 3.635000e-03

Joint ci ratio: 1.014666e-01	ci left: 6.698911e-03	ci right 7.419558e-03	k: 1481	n:210000
Cons ci ratio: 6.403253e-03	ci left: 6.388296e-01	ci right 6.429380e-01	k: 134586	n:210000
KS ci ratio: 1.884066e-01	ci left: 1.863340e-03	ci right 2.255370e-03	k: 431	n:210000
OR3A3   210000 perm   58 sec   (3595 perm/sec)   p_kst 2.052381e-03   p_cons 6.408857e-01   p_joint 7.052381e-03

Joint ci ratio: 9.944290e-02	ci left: 6.664716e-03	ci right 7.366550e-03	k: 1542	n:220000
Cons ci ratio: 6.255036e-03	ci left: 6.389504e-01	ci right 6.429641e-01	k: 141011	n:220000
KS ci ratio: 1.835819e-01	ci left: 1.878323e-03	ci right 2.262259e-03	k: 454	n:220000
OR3A3   220000 perm   62 sec   (3541 perm/sec)   p_kst 2.063636e-03   p_cons 6.409591e-01   p_joint 7.009091e-03

Joint ci ratio: 1.270528e-01	ci left: 3.859786e-03	ci right 4.387614e-03	k: 947	n:230000
Cons ci ratio: 6.118332e-03	ci left: 6.389355e-01	ci right 6.428610e-01	k: 147407	n:230000
KS ci ratio: 1.787355e-01	ci left: 1.900426e-03	ci right 2.277516e-03	k: 479	n:230000
OR3A3   230000 perm   66 sec   (3488 perm/sec)   p_kst 2.082609e-03   p_cons 6.409000e-01   p_joint 4.117391e-03

Joint ci ratio: 1.253495e-01	ci left: 3.803868e-03	ci right 4.316557e-03	k: 973	n:240000
Cons ci ratio: 5.987343e-03	ci left: 6.391438e-01	ci right 6.429862e-01	k: 153856	n:240000
KS ci ratio: 1.760087e-01	ci left: 1.880965e-03	ci right 2.247894e-03	k: 494	n:240000
OR3A3   240000 perm   70 sec   (3439 perm/sec)   p_kst 2.058333e-03   p_cons 6.410667e-01   p_joint 4.054167e-03

Joint ci ratio: 1.298531e-01	ci left: 3.396091e-03	ci right 3.871531e-03	k: 907	n:250000
Cons ci ratio: 5.865593e-03	ci left: 6.392441e-01	ci right 6.430086e-01	k: 160282	n:250000
KS ci ratio: 1.718899e-01	ci left: 1.897548e-03	ci right 2.258152e-03	k: 518	n:250000
OR3A3   250000 perm   74 sec   (3388 perm/sec)   p_kst 2.072000e-03   p_cons 6.411280e-01   p_joint 3.628000e-03

Joint ci ratio: 9.161458e-02	ci left: 6.671838e-03	ci right 7.316149e-03	k: 1817	n:260000
Cons ci ratio: 5.756173e-03	ci left: 6.389216e-01	ci right 6.426137e-01	k: 166600	n:260000
KS ci ratio: 1.680472e-01	ci left: 1.912948e-03	ci right 2.267529e-03	k: 542	n:260000
OR3A3   260000 perm   78 sec   (3318 perm/sec)   p_kst 2.084615e-03   p_cons 6.407692e-01   p_joint 6.988462e-03

Joint ci ratio: 7.694078e-02	ci left: 9.155692e-03	ci right 9.891931e-03	k: 2570	n:270000
Cons ci ratio: 5.645968e-03	ci left: 6.391687e-01	ci right 6.427913e-01	k: 173065	n:270000
KS ci ratio: 1.651827e-01	ci left: 1.909534e-03	ci right 2.256848e-03	k: 561	n:270000
OR3A3   270000 perm   83 sec   (3269 perm/sec)   p_kst 2.077778e-03   p_cons 6.409815e-01   p_joint 9.518519e-03

Joint ci ratio: 7.790770e-02	ci left: 8.611467e-03	ci right 9.313039e-03	k: 2508	n:280000
Cons ci ratio: 5.544740e-03	ci left: 6.391592e-01	ci right 6.427165e-01	k: 179463	n:280000
KS ci ratio: 1.620412e-01	ci left: 1.916691e-03	ci right 2.258032e-03	k: 583	n:280000
OR3A3   280000 perm   87 sec   (3205 perm/sec)   p_kst 2.082143e-03   p_cons 6.409393e-01   p_joint 8.957143e-03

Joint ci ratio: 7.690596e-02	ci left: 8.537688e-03	ci right 9.223905e-03	k: 2574	n:290000
Cons ci ratio: 5.445380e-03	ci left: 6.394374e-01	ci right 6.429322e-01	k: 185944	n:290000
KS ci ratio: 1.598674e-01	ci left: 1.903548e-03	ci right 2.237563e-03	k: 599	n:290000
OR3A3   290000 perm   92 sec   (3161 perm/sec)   p_kst 2.065517e-03   p_cons 6.411862e-01   p_joint 8.875862e-03

Joint ci ratio: 7.555316e-02	ci left: 8.557192e-03	ci right 9.232346e-03	k: 2667	n:300000
Cons ci ratio: 5.350631e-03	ci left: 6.397442e-01	ci right 6.431797e-01	k: 192439	n:300000
KS ci ratio: 1.572680e-01	ci left: 1.904117e-03	ci right 2.232287e-03	k: 619	n:300000
OR3A3   300000 perm   96 sec   (3119 perm/sec)   p_kst 2.063333e-03   p_cons 6.414633e-01   p_joint 8.890000e-03

Joint ci ratio: 7.446004e-02	ci left: 8.531208e-03	ci right 9.194151e-03	k: 2746	n:310000
Cons ci ratio: 5.266453e-03	ci left: 6.395248e-01	ci right 6.429049e-01	k: 198777	n:310000
KS ci ratio: 1.541889e-01	ci left: 1.920198e-03	ci right 2.244062e-03	k: 644	n:310000
OR3A3   310000 perm   101 sec   (3080 perm/sec)   p_kst 2.077419e-03   p_cons 6.412161e-01   p_joint 8.858065e-03

Joint ci ratio: 7.325627e-02	ci left: 8.543733e-03	ci right 9.196458e-03	k: 2837	n:320000
Cons ci ratio: 5.181758e-03	ci left: 6.397073e-01	ci right 6.430338e-01	k: 205239	n:320000
KS ci ratio: 1.509457e-01	ci left: 1.944354e-03	ci right 2.264770e-03	k: 672	n:320000
OR3A3   320000 perm   105 sec   (3039 perm/sec)   p_kst 2.100000e-03   p_cons 6.413719e-01   p_joint 8.865625e-03

Joint ci ratio: 7.218368e-02	ci left: 8.537722e-03	ci right 9.180038e-03	k: 2922	n:330000
Cons ci ratio: 5.104616e-03	ci left: 6.395547e-01	ci right 6.428307e-01	k: 211594	n:330000
KS ci ratio: 1.481107e-01	ci left: 1.961275e-03	ci right 2.277873e-03	k: 698	n:330000
OR3A3   330000 perm   110 sec   (2994 perm/sec)   p_kst 2.115152e-03   p_cons 6.411939e-01   p_joint 8.854545e-03

Joint ci ratio: 7.124055e-02	ci left: 8.511906e-03	ci right 9.143567e-03	k: 3000	n:340000
Cons ci ratio: 5.028987e-03	ci left: 6.395792e-01	ci right 6.428066e-01	k: 218006	n:340000
KS ci ratio: 1.459348e-01	ci left: 1.963083e-03	ci right 2.274912e-03	k: 719	n:340000
OR3A3   340000 perm   115 sec   (2952 perm/sec)   p_kst 2.114706e-03   p_cons 6.411941e-01   p_joint 8.823529e-03

Joint ci ratio: 7.021849e-02	ci left: 8.515691e-03	ci right 9.138196e-03	k: 3088	n:350000
Cons ci ratio: 4.957207e-03	ci left: 6.395483e-01	ci right 6.427294e-01	k: 224399	n:350000
KS ci ratio: 1.439494e-01	ci left: 1.962066e-03	ci right 2.269128e-03	k: 739	n:350000
OR3A3   350000 perm   121 sec   (2891 perm/sec)   p_kst 2.111429e-03   p_cons 6.411400e-01   p_joint 8.822857e-03

Joint ci ratio: 6.915141e-02	ci left: 8.541168e-03	ci right 9.155666e-03	k: 3184	n:360000
Cons ci ratio: 4.889595e-03	ci left: 6.394082e-01	ci right 6.425451e-01	k: 230752	n:360000
KS ci ratio: 1.415770e-01	ci left: 1.974529e-03	ci right 2.278019e-03	k: 764	n:360000
OR3A3   360000 perm   126 sec   (2857 perm/sec)   p_kst 2.122222e-03   p_cons 6.409778e-01   p_joint 8.844444e-03

Joint ci ratio: 6.843736e-02	ci left: 8.488283e-03	ci right 9.092420e-03	k: 3251	n:370000
Cons ci ratio: 4.821928e-03	ci left: 6.395384e-01	ci right 6.426323e-01	k: 237202	n:370000
KS ci ratio: 1.398514e-01	ci left: 1.970706e-03	ci right 2.269609e-03	k: 783	n:370000
OR3A3   370000 perm   131 sec   (2815 perm/sec)   p_kst 2.116216e-03   p_cons 6.410865e-01   p_joint 8.786486e-03

Joint ci ratio: 6.758081e-02	ci left: 8.479613e-03	ci right 9.075283e-03	k: 3334	n:380000
Cons ci ratio: 4.757647e-03	ci left: 6.395988e-01	ci right 6.426517e-01	k: 243628	n:380000
KS ci ratio: 1.381012e-01	ci left: 1.969647e-03	ci right 2.264343e-03	k: 803	n:380000
OR3A3   380000 perm   137 sec   (2782 perm/sec)   p_kst 2.113158e-03   p_cons 6.411263e-01   p_joint 8.773684e-03

Joint ci ratio: 6.659857e-02	ci left: 8.511779e-03	ci right 9.100682e-03	k: 3433	n:390000
Cons ci ratio: 4.697415e-03	ci left: 6.395050e-01	ci right 6.425186e-01	k: 249995	n:390000
KS ci ratio: 1.361670e-01	ci left: 1.976095e-03	ci right 2.267279e-03	k: 826	n:390000
OR3A3   390000 perm   142 sec   (2752 perm/sec)   p_kst 2.117949e-03   p_cons 6.410128e-01   p_joint 8.802564e-03

Joint ci ratio: 6.585569e-02	ci left: 8.490752e-03	ci right 9.071398e-03	k: 3511	n:400000
Cons ci ratio: 4.640672e-03	ci left: 6.392909e-01	ci right 6.422670e-01	k: 256312	n:400000
KS ci ratio: 1.347894e-01	ci left: 1.967751e-03	ci right 2.254537e-03	k: 843	n:400000
OR3A3   400000 perm   147 sec   (2721 perm/sec)   p_kst 2.107500e-03   p_cons 6.407800e-01   p_joint 8.777500e-03

Joint ci ratio: 7.658883e-02	ci left: 6.105544e-03	ci right 6.594155e-03	k: 2602	n:410000
Cons ci ratio: 4.584866e-03	ci left: 6.391950e-01	ci right 6.421347e-01	k: 262673	n:410000
KS ci ratio: 1.330661e-01	ci left: 1.971618e-03	ci right 2.255004e-03	k: 865	n:410000
OR3A3   410000 perm   152 sec   (2692 perm/sec)   p_kst 2.109756e-03   p_cons 6.406659e-01   p_joint 6.346341e-03

Joint ci ratio: 7.555030e-02	ci left: 6.128344e-03	ci right 6.611838e-03	k: 2674	n:420000
Cons ci ratio: 4.531447e-03	ci left: 6.390609e-01	ci right 6.419657e-01	k: 269016	n:420000
KS ci ratio: 1.311117e-01	ci left: 1.984535e-03	ci right 2.265261e-03	k: 891	n:420000
OR3A3   420000 perm   158 sec   (2663 perm/sec)   p_kst 2.121429e-03   p_cons 6.405143e-01   p_joint 6.366667e-03

Joint ci ratio: 6.315003e-02	ci left: 8.600831e-03	ci right 9.163956e-03	k: 3818	n:430000
Cons ci ratio: 4.478336e-03	ci left: 6.390893e-01	ci right 6.419600e-01	k: 275426	n:430000
KS ci ratio: 1.293116e-01	ci left: 1.994630e-03	ci right 2.272612e-03	k: 916	n:430000
OR3A3   430000 perm   163 sec   (2635 perm/sec)   p_kst 2.130233e-03   p_cons 6.405256e-01   p_joint 8.879070e-03

Joint ci ratio: 6.249945e-02	ci left: 8.584317e-03	ci right 9.140361e-03	k: 3898	n:440000
Cons ci ratio: 4.427203e-03	ci left: 6.391006e-01	ci right 6.419385e-01	k: 281829	n:440000
KS ci ratio: 1.279242e-01	ci left: 1.993289e-03	ci right 2.267879e-03	k: 936	n:440000
OR3A3   440000 perm   169 sec   (2607 perm/sec)   p_kst 2.127273e-03   p_cons 6.405205e-01   p_joint 8.859091e-03

Joint ci ratio: 6.193141e-02	ci left: 8.551061e-03	ci right 9.099736e-03	k: 3970	n:450000
Cons ci ratio: 4.377677e-03	ci left: 6.391227e-01	ci right 6.419289e-01	k: 288237	n:450000
KS ci ratio: 1.266470e-01	ci left: 1.989871e-03	ci right 2.261048e-03	k: 955	n:450000
OR3A3   450000 perm   175 sec   (2578 perm/sec)   p_kst 2.122222e-03   p_cons 6.405267e-01   p_joint 8.822222e-03

Joint ci ratio: 7.228726e-02	ci left: 6.122479e-03	ci right 6.583772e-03	k: 2921	n:460000
Cons ci ratio: 4.330941e-03	ci left: 6.390200e-01	ci right 6.417957e-01	k: 294588	n:460000
KS ci ratio: 1.254717e-01	ci left: 1.984509e-03	ci right 2.252259e-03	k: 973	n:460000
OR3A3   460000 perm   181 sec   (2548 perm/sec)   p_kst 2.115217e-03   p_cons 6.404087e-01   p_joint 6.350000e-03

Joint ci ratio: 6.058826e-02	ci left: 8.560110e-03	ci right 9.097036e-03	k: 4148	n:470000
Cons ci ratio: 4.284483e-03	ci left: 6.390496e-01	ci right 6.417955e-01	k: 300999	n:470000
KS ci ratio: 1.241406e-01	ci left: 1.985572e-03	ci right 2.250413e-03	k: 994	n:470000
OR3A3   470000 perm   187 sec   (2520 perm/sec)   p_kst 2.114894e-03   p_cons 6.404234e-01   p_joint 8.825532e-03

Joint ci ratio: 5.983480e-02	ci left: 8.597235e-03	ci right 9.129552e-03	k: 4253	n:480000
Cons ci ratio: 4.241234e-03	ci left: 6.388883e-01	ci right 6.416058e-01	k: 307319	n:480000
KS ci ratio: 1.223691e-01	ci left: 2.002761e-03	ci right 2.265807e-03	k: 1023	n:480000
OR3A3   480000 perm   192 sec   (2494 perm/sec)   p_kst 2.131250e-03   p_cons 6.402479e-01   p_joint 8.860417e-03

Joint ci ratio: 5.917728e-02	ci left: 8.612776e-03	ci right 9.139994e-03	k: 4348	n:490000
Cons ci ratio: 4.197370e-03	ci left: 6.389422e-01	ci right 6.416317e-01	k: 313741	n:490000
KS ci ratio: 1.207864e-01	ci left: 2.015315e-03	ci right 2.276342e-03	k: 1050	n:490000
OR3A3   490000 perm   199 sec   (2468 perm/sec)   p_kst 2.142857e-03   p_cons 6.402878e-01   p_joint 8.873469e-03

Joint ci ratio: 5.864760e-02	ci left: 8.596191e-03	ci right 9.117524e-03	k: 4427	n:500000
Cons ci ratio: 4.155597e-03	ci left: 6.389099e-01	ci right 6.415725e-01	k: 320121	n:500000
KS ci ratio: 1.194859e-01	ci left: 2.019627e-03	ci right 2.278196e-03	k: 1073	n:500000
OR3A3   500000 perm   205 sec   (2442 perm/sec)   p_kst 2.146000e-03   p_cons 6.402420e-01   p_joint 8.854000e-03

Joint ci ratio: 5.805395e-02	ci left: 8.603467e-03	ci right 9.119783e-03	k: 4518	n:510000
Cons ci ratio: 4.114539e-03	ci left: 6.389360e-01	ci right 6.415722e-01	k: 326530	n:510000
KS ci ratio: 1.182265e-01	ci left: 2.023784e-03	ci right 2.279964e-03	k: 1096	n:510000
OR3A3   510000 perm   211 sec   (2418 perm/sec)   p_kst 2.149020e-03   p_cons 6.402549e-01   p_joint 8.858824e-03

Joint ci ratio: 5.745284e-02	ci left: 8.618072e-03	ci right 9.129731e-03	k: 4613	n:520000
Cons ci ratio: 4.073705e-03	ci left: 6.390709e-01	ci right 6.416814e-01	k: 332996	n:520000
KS ci ratio: 1.173742e-01	ci left: 2.014727e-03	ci right 2.267795e-03	k: 1112	n:520000
OR3A3   520000 perm   217 sec   (2394 perm/sec)   p_kst 2.138462e-03   p_cons 6.403769e-01   p_joint 8.871154e-03

Joint ci ratio: 5.695550e-02	ci left: 8.606109e-03	ci right 9.112489e-03	k: 4694	n:530000
Cons ci ratio: 4.034211e-03	ci left: 6.391838e-01	ci right 6.417694e-01	k: 339453	n:530000
KS ci ratio: 1.162824e-01	ci left: 2.015178e-03	ci right 2.265786e-03	k: 1133	n:530000
OR3A3   530000 perm   224 sec   (2370 perm/sec)   p_kst 2.137736e-03   p_cons 6.404774e-01   p_joint 8.856604e-03

Joint ci ratio: 5.647086e-02	ci left: 8.594608e-03	ci right 9.095868e-03	k: 4775	n:540000
Cons ci ratio: 3.996213e-03	ci left: 6.392500e-01	ci right 6.418115e-01	k: 345887	n:540000
KS ci ratio: 1.151206e-01	ci left: 2.019220e-03	ci right 2.267651e-03	k: 1156	n:540000
OR3A3   540000 perm   230 sec   (2347 perm/sec)   p_kst 2.140741e-03   p_cons 6.405315e-01   p_joint 8.842593e-03

Joint ci ratio: 5.592293e-02	ci left: 8.606851e-03	ci right 9.103798e-03	k: 4869	n:550000
Cons ci ratio: 3.959941e-03	ci left: 6.392356e-01	ci right 6.417738e-01	k: 352278	n:550000
KS ci ratio: 1.141385e-01	ci left: 2.017828e-03	ci right 2.263827e-03	k: 1176	n:550000
OR3A3   550000 perm   237 sec   (2325 perm/sec)   p_kst 2.138182e-03   p_cons 6.405055e-01   p_joint 8.852727e-03

Joint ci ratio: 5.540190e-02	ci left: 8.615158e-03	ci right 9.107801e-03	k: 4961	n:560000
Cons ci ratio: 3.924259e-03	ci left: 6.392666e-01	ci right 6.417819e-01	k: 358694	n:560000
KS ci ratio: 1.128979e-01	ci left: 2.026906e-03	ci right 2.271148e-03	k: 1202	n:560000
OR3A3   560000 perm   243 sec   (2302 perm/sec)   p_kst 2.146429e-03   p_cons 6.405250e-01   p_joint 8.858929e-03

Joint ci ratio: 5.489517e-02	ci left: 8.623193e-03	ci right 9.111643e-03	k: 5053	n:570000
Cons ci ratio: 3.890147e-03	ci left: 6.392228e-01	ci right 6.417161e-01	k: 365068	n:570000
KS ci ratio: 1.120630e-01	ci left: 2.022036e-03	ci right 2.263770e-03	k: 1220	n:570000
OR3A3   570000 perm   250 sec   (2276 perm/sec)   p_kst 2.140351e-03   p_cons 6.404702e-01   p_joint 8.864912e-03

Joint ci ratio: 5.435415e-02	ci left: 8.646280e-03	ci right 9.131059e-03	k: 5154	n:580000
Cons ci ratio: 3.856244e-03	ci left: 6.392601e-01	ci right 6.417316e-01	k: 371488	n:580000
KS ci ratio: 1.109327e-01	ci left: 2.029075e-03	ci right 2.269044e-03	k: 1245	n:580000
OR3A3   580000 perm   257 sec   (2255 perm/sec)   p_kst 2.146552e-03   p_cons 6.404966e-01   p_joint 8.886207e-03

Joint ci ratio: 5.392207e-02	ci left: 8.638505e-03	ci right 9.118878e-03	k: 5237	n:590000
Cons ci ratio: 3.824297e-03	ci left: 6.391655e-01	ci right 6.416162e-01	k: 377831	n:590000
KS ci ratio: 1.100096e-01	ci left: 2.029294e-03	ci right 2.267162e-03	k: 1266	n:590000
OR3A3   590000 perm   265 sec   (2230 perm/sec)   p_kst 2.145763e-03   p_cons 6.403915e-01   p_joint 8.876271e-03

Joint ci ratio: 5.349505e-02	ci left: 8.632649e-03	ci right 9.108778e-03	k: 5321	n:600000
Cons ci ratio: 3.793459e-03	ci left: 6.390341e-01	ci right 6.414645e-01	k: 384150	n:600000
KS ci ratio: 1.094075e-01	ci left: 2.018165e-03	ci right 2.253350e-03	k: 1280	n:600000
OR3A3   600000 perm   272 sec   (2208 perm/sec)   p_kst 2.133333e-03   p_cons 6.402500e-01   p_joint 8.868333e-03

Joint ci ratio: 5.309288e-02	ci left: 8.622147e-03	ci right 9.094011e-03	k: 5402	n:610000
Cons ci ratio: 3.761494e-03	ci left: 6.391352e-01	ci right 6.415454e-01	k: 390608	n:610000
KS ci ratio: 1.086052e-01	ci left: 2.015378e-03	ci right 2.248407e-03	k: 1299	n:610000
OR3A3   610000 perm   279 sec   (2184 perm/sec)   p_kst 2.129508e-03   p_cons 6.403410e-01   p_joint 8.855738e-03

Joint ci ratio: 5.272391e-02	ci left: 8.604037e-03	ci right 9.071538e-03	k: 5478	n:620000
Cons ci ratio: 3.730911e-03	ci left: 6.391605e-01	ci right 6.415511e-01	k: 397021	n:620000
KS ci ratio: 1.076162e-01	ci left: 2.020536e-03	ci right 2.251898e-03	k: 1323	n:620000
OR3A3   620000 perm   287 sec   (2157 perm/sec)   p_kst 2.133871e-03   p_cons 6.403565e-01   p_joint 8.835484e-03

Joint ci ratio: 5.227713e-02	ci left: 8.614713e-03	ci right 9.078709e-03	k: 5572	n:630000
Cons ci ratio: 3.701814e-03	ci left: 6.390913e-01	ci right 6.414630e-01	k: 403375	n:630000
KS ci ratio: 1.064954e-01	ci left: 2.031719e-03	ci right 2.261787e-03	k: 1351	n:630000
OR3A3   630000 perm   295 sec   (2137 perm/sec)   p_kst 2.144444e-03   p_cons 6.402778e-01   p_joint 8.844444e-03

Joint ci ratio: 5.190162e-02	ci left: 8.605021e-03	ci right 9.065066e-03	k: 5653	n:640000
Cons ci ratio: 3.672839e-03	ci left: 6.390931e-01	ci right 6.414462e-01	k: 409773	n:640000
KS ci ratio: 1.058712e-01	ci left: 2.024309e-03	ci right 2.252111e-03	k: 1367	n:640000
OR3A3   640000 perm   302 sec   (2118 perm/sec)   p_kst 2.135937e-03   p_cons 6.402703e-01   p_joint 8.832813e-03

Joint ci ratio: 5.140763e-02	ci left: 8.638167e-03	ci right 9.095457e-03	k: 5762	n:650000
Cons ci ratio: 3.644693e-03	ci left: 6.390750e-01	ci right 6.414099e-01	k: 416158	n:650000
KS ci ratio: 1.047660e-01	ci left: 2.036606e-03	ci right 2.263252e-03	k: 1396	n:650000
OR3A3   650000 perm   310 sec   (2096 perm/sec)   p_kst 2.147692e-03   p_cons 6.402431e-01   p_joint 8.864615e-03

Joint ci ratio: 5.104602e-02	ci left: 8.629935e-03	ci right 9.083482e-03	k: 5844	n:660000
Cons ci ratio: 3.617100e-03	ci left: 6.390680e-01	ci right 6.413853e-01	k: 422550	n:660000
KS ci ratio: 1.038407e-01	ci left: 2.042639e-03	ci right 2.267827e-03	k: 1421	n:660000
OR3A3   660000 perm   318 sec   (2077 perm/sec)   p_kst 2.153030e-03   p_cons 6.402273e-01   p_joint 8.854545e-03

Joint ci ratio: 5.062303e-02	ci left: 8.645542e-03	ci right 9.096034e-03	k: 5942	n:670000
Cons ci ratio: 3.591079e-03	ci left: 6.389389e-01	ci right 6.412390e-01	k: 428860	n:670000
KS ci ratio: 1.029039e-01	ci left: 2.049955e-03	ci right 2.273787e-03	k: 1447	n:670000
OR3A3   670000 perm   325 sec   (2059 perm/sec)   p_kst 2.159701e-03   p_cons 6.400896e-01   p_joint 8.868657e-03

Joint ci ratio: 5.019782e-02	ci left: 8.665061e-03	ci right 9.112668e-03	k: 6043	n:680000
Cons ci ratio: 3.564347e-03	ci left: 6.389770e-01	ci right 6.412600e-01	k: 435281	n:680000
KS ci ratio: 1.017157e-01	ci left: 2.068531e-03	ci right 2.291627e-03	k: 1481	n:680000
OR3A3   680000 perm   333 sec   (2041 perm/sec)   p_kst 2.177941e-03   p_cons 6.401191e-01   p_joint 8.886765e-03

Joint ci ratio: 4.757492e-02	ci left: 9.511613e-03	ci right 9.976575e-03	k: 6722	n:690000
Cons ci ratio: 3.538894e-03	ci left: 6.389241e-01	ci right 6.411906e-01	k: 441640	n:690000
KS ci ratio: 1.009354e-01	ci left: 2.071041e-03	ci right 2.292592e-03	k: 1504	n:690000
OR3A3   690000 perm   342 sec   (2019 perm/sec)   p_kst 2.179710e-03   p_cons 6.400580e-01   p_joint 9.742029e-03

Joint ci ratio: 4.718303e-02	ci left: 9.533840e-03	ci right 9.995945e-03	k: 6834	n:700000
Cons ci ratio: 3.514120e-03	ci left: 6.388542e-01	ci right 6.411046e-01	k: 447986	n:700000
KS ci ratio: 1.001399e-01	ci left: 2.074878e-03	ci right 2.294988e-03	k: 1528	n:700000
OR3A3   700000 perm   350 sec   (1999 perm/sec)   p_kst 2.182857e-03   p_cons 6.399800e-01   p_joint 9.762857e-03

Joint ci ratio: 4.689277e-02	ci left: 9.517869e-03	ci right 9.976285e-03	k: 6919	n:710000
Cons ci ratio: 3.488995e-03	ci left: 6.389005e-01	ci right 6.411349e-01	k: 454413	n:710000
KS ci ratio: 9.958815e-02	ci left: 2.069000e-03	ci right 2.287206e-03	k: 1545	n:710000
OR3A3   710000 perm   359 sec   (1980 perm/sec)   p_kst 2.176056e-03   p_cons 6.400183e-01   p_joint 9.745070e-03

Outputting figure to mutsig2_images.part000000000121/OR3A3.2_969_710000_0.0021761_0.64002_0.0097451.png
                gene_name: OR3A3
               theta_stop: 0.100 
                    nperm: 710000 
                     p_ks: 0.0022 
        ci_ks_bounds_left: 0.0021 
       ci_ks_bounds_right: 0.0023 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.0097 
     ci_joint_bounds_left: 0.0095 
    ci_joint_bounds_right: 0.0100 

Current progress: 94 percent done.
OR4A47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.094692e-02	ci left: 6.063849e-01	ci right 6.255475e-01	k: 6160	n:10000
Cons ci ratio: 1.840456e-02	ci left: 8.117176e-01	ci right 8.268959e-01	k: 8194	n:10000
KS ci ratio: 9.568773e-02	ci left: 1.367812e-01	ci right 1.506270e-01	k: 1436	n:10000
OR4A47   10000 perm   1 sec   (6941 perm/sec)   p_kst 1.436000e-01   p_cons 8.194000e-01   p_joint 6.160000e-01

Outputting figure to mutsig2_images.part000000000121/OR4A47.2_934_10000_0.1436_0.8194_0.616.png
                gene_name: OR4A47
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 96 percent done.
OR4B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.117628e-02	ci left: 6.028698e-01	ci right 6.220646e-01	k: 6125	n:10000
KS ci ratio: 3.331279e-02	ci left: 5.708560e-01	ci right 5.902970e-01	k: 5806	n:10000
OR4B1   10000 perm   2 sec   (6572 perm/sec)   p_kst 5.806000e-01   p_cons 6.125000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR4B1.2_934_10000_0.5806_0.6125_1.png
                gene_name: OR4B1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
OR4C13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.588489e-02	ci left: 5.341766e-01	ci right 5.537978e-01	k: 5440	n:10000
KS ci ratio: 2.326536e-02	ci left: 7.307786e-01	ci right 7.480817e-01	k: 7395	n:10000
OR4C13   10000 perm   2 sec   (6518 perm/sec)   p_kst 7.395000e-01   p_cons 5.440000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR4C13.2_934_10000_0.7395_0.544_1.png
                gene_name: OR4C13
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 99 percent done.
OR4C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.369728e-02	ci left: 5.652404e-01	ci right 5.847159e-01	k: 5750	n:10000
KS ci ratio: 1.735752e-02	ci left: 8.286969e-01	ci right 8.433068e-01	k: 8361	n:10000
OR4C3   10000 perm   1 sec   (6893 perm/sec)   p_kst 8.361000e-01   p_cons 5.750000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000121/OR4C3.2_994_10000_0.8361_0.575_1.png
                gene_name: OR4C3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000121
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 121 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1428>
Subject: Job 9894058: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1428>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000122> was used as the working directory.
Started at Sat Oct  6 00:22:07 2012
Results reported at Sat Oct  6 00:40:38 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000122.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000122.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 122  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000122.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1213.97 sec.
    Max Memory :      3597 MB
    Max Swap   :      5934 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
122
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 122
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 122: processing genes 10909 - 10998
Calculating significance of each gene.
Using projection method.
10909	OR4D9	3.539057e-01
10910	OR4E2	1
10911	OR4F15	8.580992e-02
10912	OR4F17	1
10913	OR4F21	1
10914	OR4F4	1
10915	OR4F5	1
10916	OR4F6	3.365031e-01
10917	OR4K1	1.357440e-01
10918	OR4K13	7.037249e-01
10919	OR4K14	4.098126e-01
10920	OR4K15	4.961064e-02
10921	OR4K17	5.141535e-01
10922	OR4K2	2.123927e-01
10923	OR4K5	2.134716e-02
10924	OR4L1	4.887992e-01
10925	OR4M1	5.071609e-02
10926	OR4M2	6.216920e-02
10927	OR4N2	1.743143e-01
10928	OR4N4	8.638910e-02
10929	OR4N5	1
10930	OR4P4	3.917708e-01
10931	OR4Q3	1
10932	OR4S1	7.193445e-02
10933	OR4S2	8.124769e-02
10934	OR4X1	6.107821e-02
10935	OR4X2	6.223744e-02
10936	OR51A2	1.027814e-01
10937	OR51A4	3.536522e-02
10938	OR51A7	1.392469e-02
10939	OR51B2	2.515640e-02
10940	OR51B4	3.142762e-01
10941	OR51B5	1.135301e-01
10942	OR51B6	7.248705e-01
10943	OR51D1	1
10944	OR51E1	4.110427e-01
10945	OR51E2	4.995683e-01
10946	OR51F1	2.113297e-01
10947	OR51F2	4.497923e-01
10948	OR51G1	8.042380e-01
10949	OR51G2	2.551841e-03
10950	OR51I1	1.595946e-01
10951	OR51I2	1.988763e-03
10952	OR51L1	3.981969e-01
10953	OR51M1	2.068054e-01
10954	OR51Q1	3.701045e-01
10955	OR51S1	3.710454e-01
10956	OR51T1	3.442975e-01
10957	OR51V1	2.399135e-05
10958	OR52A1	4.713216e-01
10959	OR52A4	1
10960	OR52A5	1.565466e-03
10961	OR52B2	4.785715e-01
10962	OR52B4	5.725020e-03
10963	OR52B6	1
10964	OR52D1	1.649438e-01
10965	OR52E2	1
10966	OR52E4	8.887536e-03
10967	OR52E6	5.840709e-02
10968	OR52E8	1.736094e-01
10969	OR52H1	1.179685e-03
10970	OR52I1	7.564455e-01
10971	OR52I2	8.243503e-01
10972	OR52J3	1.673614e-03
10973	OR52K1	2.192511e-01
10974	OR52K2	3.651146e-01
10975	OR52L1	1
10976	OR52M1	6.506825e-01
10977	OR52N1	3.063329e-03
10978	OR52N2	5.604701e-01
10979	OR52N4	1.043043e-01
10980	OR52N5	3.251466e-01
10981	OR52R1	2.575766e-02
10982	OR52W1	5.512990e-01
10983	OR56A1	3.130299e-02
10984	OR56A3	1.311398e-01
10985	OR56A4	2.077162e-02
10986	OR56B1	2.810772e-01
10987	OR56B4	1
10988	OR5A1	1
10989	OR5A2	4.917542e-02
10990	OR5AC2	2.389060e-01
10991	OR5AK2	1.294625e-01
10992	OR5AN1	2.484642e-01
10993	OR5AP2	7.002311e-03
10994	OR5AR1	6.905496e-01
10995	OR5AS1	2.656299e-02
10996	OR5AU1	3.038896e-01
10997	OR5B12	4.146429e-03
10998	OR5B17	2.410927e-02
Done

Running MutSig 2:
Scatter job 122: processing genes 10909 - 10998
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OR51V1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.978778e-03	ci left: 9.562867e-01	ci right 9.640423e-01	k: 9603	n:10000
KS ci ratio: 1.873938e-02	ci left: 8.062326e-01	ci right 8.215841e-01	k: 8140	n:10000
OR51V1   10000 perm   2 sec   (4509 perm/sec)   p_kst 8.140000e-01   p_cons 9.603000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR51V1.11_970_10000_0.814_0.9603_1.png
                gene_name: OR51V1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
OR51G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.607365e-02	ci left: 8.490671e-01	ci right 8.629248e-01	k: 8561	n:10000
Cons ci ratio: 8.103232e-03	ci left: 9.550321e-01	ci right 9.628976e-01	k: 9591	n:10000
KS ci ratio: 2.852906e-02	ci left: 6.442810e-01	ci right 6.630294e-01	k: 6537	n:10000
OR51G2   10000 perm   2 sec   (4975 perm/sec)   p_kst 6.537000e-01   p_cons 9.591000e-01   p_joint 8.561000e-01

Outputting figure to mutsig2_images.part000000000122/OR51G2.8_949_10000_0.6537_0.9591_0.8561.png
                gene_name: OR51G2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 3 percent done.
OR51I2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.007054e-02	ci left: 6.199480e-01	ci right 6.389766e-01	k: 6295	n:10000
KS ci ratio: 9.436336e-03	ci left: 9.406618e-01	ci right 9.496766e-01	k: 9453	n:10000
OR51I2   10000 perm   2 sec   (4744 perm/sec)   p_kst 9.453000e-01   p_cons 6.295000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR51I2.7_943_10000_0.9453_0.6295_1.png
                gene_name: OR51I2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
OR52A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.197531e-02	ci left: 9.090537e-01	ci right 9.201034e-01	k: 9147	n:10000
KS ci ratio: 3.609511e-02	ci left: 5.312726e-01	ci right 5.509035e-01	k: 5411	n:10000
OR52A5   10000 perm   2 sec   (5227 perm/sec)   p_kst 5.411000e-01   p_cons 9.147000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR52A5.7_954_10000_0.5411_0.9147_1.png
                gene_name: OR52A5
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
OR52H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.412351e-02	ci left: 7.164367e-01	ci right 7.340319e-01	k: 7253	n:10000
Cons ci ratio: 5.925716e-02	ci left: 2.952901e-01	ci right 3.134240e-01	k: 3043	n:10000
KS ci ratio: 1.311400e-02	ci left: 8.933376e-01	ci right 9.052286e-01	k: 8994	n:10000
OR52H1   10000 perm   2 sec   (4845 perm/sec)   p_kst 8.994000e-01   p_cons 3.043000e-01   p_joint 7.253000e-01

Outputting figure to mutsig2_images.part000000000122/OR52H1.7_967_10000_0.8994_0.3043_0.7253.png
                gene_name: OR52H1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 8 percent done.
OR52E4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.626875e-02	ci left: 8.460089e-01	ci right 8.599848e-01	k: 8531	n:10000
Cons ci ratio: 6.898055e-02	ci left: 2.356076e-01	ci right 2.525417e-01	k: 2440	n:10000
KS ci ratio: 1.803054e-02	ci left: 8.178151e-01	ci right 8.327949e-01	k: 8254	n:10000
OR52E4   10000 perm   2 sec   (5391 perm/sec)   p_kst 8.254000e-01   p_cons 2.440000e-01   p_joint 8.531000e-01

Outputting figure to mutsig2_images.part000000000122/OR52E4.6_943_10000_0.8254_0.244_0.8531.png
                gene_name: OR52E4
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 9 percent done.
OR52N1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.362230e-02	ci left: 8.860594e-01	ci right 8.983110e-01	k: 8923	n:10000
Cons ci ratio: 4.226054e-02	ci left: 4.525901e-01	ci right 4.722318e-01	k: 4624	n:10000
KS ci ratio: 6.066330e-03	ci left: 9.735507e-01	ci right 9.795672e-01	k: 9767	n:10000
OR52N1   10000 perm   2 sec   (6324 perm/sec)   p_kst 9.767000e-01   p_cons 4.624000e-01   p_joint 8.923000e-01

Outputting figure to mutsig2_images.part000000000122/OR52N1.6_967_10000_0.9767_0.4624_0.8923.png
                gene_name: OR52N1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 11 percent done.
OR5B12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.307221e-02	ci left: 7.340122e-01	ci right 7.512462e-01	k: 7427	n:10000
KS ci ratio: 2.874988e-02	ci left: 6.407601e-01	ci right 6.595523e-01	k: 6502	n:10000
OR5B12   10000 perm   2 sec   (5027 perm/sec)   p_kst 6.502000e-01   p_cons 7.427000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR5B12.6_949_10000_0.6502_0.7427_1.png
                gene_name: OR5B12
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
OR4K15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.735644e-02	ci left: 2.444035e-01	ci right 2.615407e-01	k: 2529	n:10000
Cons ci ratio: 2.225767e-02	ci left: 7.476605e-01	ci right 7.645900e-01	k: 7562	n:10000
KS ci ratio: 1.323893e-01	ci left: 7.524035e-02	ci right 8.600545e-02	k: 805	n:10000
OR4K15   10000 perm   2 sec   (6090 perm/sec)   p_kst 8.050000e-02   p_cons 7.562000e-01   p_joint 2.529000e-01

Joint ci ratio: 5.563649e-02	ci left: 1.932880e-01	ci right 2.043997e-01	k: 3976	n:20000
Cons ci ratio: 1.564474e-02	ci left: 7.524053e-01	ci right 7.643195e-01	k: 15168	n:20000
KS ci ratio: 9.274202e-02	ci left: 7.818459e-02	ci right 8.583745e-02	k: 1639	n:20000
OR4K15   20000 perm   4 sec   (5428 perm/sec)   p_kst 8.195000e-02   p_cons 7.584000e-01   p_joint 1.988000e-01

Outputting figure to mutsig2_images.part000000000122/OR4K15.5_1051_20000_0.08195_0.7584_0.1988.png
                gene_name: OR4K15
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 14 percent done.
OR4M2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.924495e-02	ci left: 7.979081e-01	ci right 8.135134e-01	k: 8058	n:10000
Cons ci ratio: 2.342837e-02	ci left: 7.280508e-01	ci right 7.454111e-01	k: 7368	n:10000
KS ci ratio: 3.100581e-02	ci left: 6.054810e-01	ci right 6.246520e-01	k: 6151	n:10000
OR4M2   10000 perm   2 sec   (5193 perm/sec)   p_kst 6.151000e-01   p_cons 7.368000e-01   p_joint 8.058000e-01

Outputting figure to mutsig2_images.part000000000122/OR4M2.5_946_10000_0.6151_0.7368_0.8058.png
                gene_name: OR4M2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 15 percent done.
OR4N4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.304807e-02	ci left: 7.344164e-01	ci right 7.516418e-01	k: 7431	n:10000
Cons ci ratio: 7.649413e-03	ci left: 9.595321e-01	ci right 9.669949e-01	k: 9634	n:10000
KS ci ratio: 2.829633e-02	ci left: 6.480036e-01	ci right 6.667046e-01	k: 6574	n:10000
OR4N4   10000 perm   2 sec   (5631 perm/sec)   p_kst 6.574000e-01   p_cons 9.634000e-01   p_joint 7.431000e-01

Outputting figure to mutsig2_images.part000000000122/OR4N4.5_955_10000_0.6574_0.9634_0.7431.png
                gene_name: OR4N4
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 17 percent done.
OR51A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.576934e-02	ci left: 5.357789e-01	ci right 5.553945e-01	k: 5456	n:10000
Cons ci ratio: 2.113385e-02	ci left: 7.664836e-01	ci right 7.829561e-01	k: 7748	n:10000
KS ci ratio: 6.108332e-02	ci left: 2.827037e-01	ci right 3.006178e-01	k: 2916	n:10000
OR51A7   10000 perm   2 sec   (6099 perm/sec)   p_kst 2.916000e-01   p_cons 7.748000e-01   p_joint 5.456000e-01

Outputting figure to mutsig2_images.part000000000122/OR51A7.5_943_10000_0.2916_0.7748_0.5456.png
                gene_name: OR51A7
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 18 percent done.
OR51I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.098745e-02	ci left: 3.619185e-01	ci right 3.809565e-01	k: 3714	n:10000
Cons ci ratio: 1.943528e-02	ci left: 7.947624e-01	ci right 8.104609e-01	k: 8027	n:10000
KS ci ratio: 7.160178e-02	ci left: 2.222750e-01	ci right 2.388823e-01	k: 2305	n:10000
OR51I1   10000 perm   2 sec   (4629 perm/sec)   p_kst 2.305000e-01   p_cons 8.027000e-01   p_joint 3.714000e-01

Outputting figure to mutsig2_images.part000000000122/OR51I1.5_949_10000_0.2305_0.8027_0.3714.png
                gene_name: OR51I1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 20 percent done.
OR52B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.368207e-02	ci left: 7.238082e-01	ci right 7.412561e-01	k: 7326	n:10000
KS ci ratio: 1.532928e-02	ci left: 8.605959e-01	ci right 8.739894e-01	k: 8674	n:10000
OR52B4   10000 perm   2 sec   (5475 perm/sec)   p_kst 8.674000e-01   p_cons 7.326000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR52B4.5_949_10000_0.8674_0.7326_1.png
                gene_name: OR52B4
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
OR52D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.379870e-02	ci left: 8.834987e-01	ci right 8.958733e-01	k: 8898	n:10000
KS ci ratio: 1.252672e-02	ci left: 9.015493e-01	ci right 9.130121e-01	k: 9074	n:10000
OR52D1   10000 perm   2 sec   (6315 perm/sec)   p_kst 9.074000e-01   p_cons 8.898000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR52D1.5_961_10000_0.9074_0.8898_1.png
                gene_name: OR52D1
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
OR52E6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.505507e-02	ci left: 8.647828e-01	ci right 8.780001e-01	k: 8715	n:10000
KS ci ratio: 1.395987e-02	ci left: 8.811437e-01	ci right 8.936296e-01	k: 8875	n:10000
OR52E6   10000 perm   2 sec   (6226 perm/sec)   p_kst 8.875000e-01   p_cons 8.715000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR52E6.5_946_10000_0.8875_0.8715_1.png
                gene_name: OR52E6
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
OR52J3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.528874e-02	ci left: 5.424899e-01	ci right 5.620796e-01	k: 5523	n:10000
Cons ci ratio: 3.595002e-02	ci left: 5.332753e-01	ci right 5.528996e-01	k: 5431	n:10000
KS ci ratio: 4.408155e-02	ci left: 4.317357e-01	ci right 4.512984e-01	k: 4415	n:10000
OR52J3   10000 perm   2 sec   (5444 perm/sec)   p_kst 4.415000e-01   p_cons 5.431000e-01   p_joint 5.523000e-01

Outputting figure to mutsig2_images.part000000000122/OR52J3.5_940_10000_0.4415_0.5431_0.5523.png
                gene_name: OR52J3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 26 percent done.
OR52R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.693458e-03	ci left: 9.488764e-01	ci right 9.572571e-01	k: 9532	n:10000
KS ci ratio: 1.166602e-02	ci left: 9.131707e-01	ci right 9.239840e-01	k: 9187	n:10000
OR52R1   10000 perm   2 sec   (5962 perm/sec)   p_kst 9.187000e-01   p_cons 9.532000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR52R1.5_951_10000_0.9187_0.9532_1.png
                gene_name: OR52R1
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
OR56A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.344096e-02	ci left: 2.674529e-01	ci right 2.850777e-01	k: 2762	n:10000
Cons ci ratio: 6.590890e-02	ci left: 2.526106e-01	ci right 2.699286e-01	k: 2612	n:10000
KS ci ratio: 6.403307e-02	ci left: 2.637906e-01	ci right 2.813421e-01	k: 2725	n:10000
OR56A4   10000 perm   2 sec   (5101 perm/sec)   p_kst 2.725000e-01   p_cons 2.612000e-01   p_joint 2.762000e-01

Outputting figure to mutsig2_images.part000000000122/OR56A4.5_1102_10000_0.2725_0.2612_0.2762.png
                gene_name: OR56A4
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 29 percent done.
OR5AP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.759606e-02	ci left: 6.592760e-01	ci right 6.778257e-01	k: 6686	n:10000
Cons ci ratio: 1.457434e-02	ci left: 8.720385e-01	ci right 8.849402e-01	k: 8786	n:10000
KS ci ratio: 4.262781e-02	ci left: 4.482980e-01	ci right 4.679264e-01	k: 4581	n:10000
OR5AP2   10000 perm   2 sec   (5856 perm/sec)   p_kst 4.581000e-01   p_cons 8.786000e-01   p_joint 6.686000e-01

Outputting figure to mutsig2_images.part000000000122/OR5AP2.5_955_10000_0.4581_0.8786_0.6686.png
                gene_name: OR5AP2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 31 percent done.
OR5B17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.727517e-02	ci left: 8.300197e-01	ci right 8.445832e-01	k: 8374	n:10000
Cons ci ratio: 3.459494e-02	ci left: 5.523091e-01	ci right 5.718547e-01	k: 5621	n:10000
KS ci ratio: 2.053964e-02	ci left: 7.764103e-01	ci right 7.926236e-01	k: 7846	n:10000
OR5B17   10000 perm   2 sec   (4959 perm/sec)   p_kst 7.846000e-01   p_cons 5.621000e-01   p_joint 8.374000e-01

Outputting figure to mutsig2_images.part000000000122/OR5B17.5_949_10000_0.7846_0.5621_0.8374.png
                gene_name: OR5B17
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 32 percent done.
OR4K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.870972e-01	ci left: 1.567108e-02	ci right 2.101476e-02	k: 182	n:10000
Cons ci ratio: 1.811177e-02	ci left: 8.164937e-01	ci right 8.315171e-01	k: 8241	n:10000
KS ci ratio: 7.268333e-01	ci left: 1.861361e-03	ci right 4.044256e-03	k: 28	n:10000
OR4K1   10000 perm   2 sec   (6290 perm/sec)   p_kst 2.800000e-03   p_cons 8.241000e-01   p_joint 1.820000e-02

Joint ci ratio: 1.883388e-01	ci left: 1.920075e-02	ci right 2.324013e-02	k: 423	n:20000
Cons ci ratio: 1.323505e-02	ci left: 8.088907e-01	ci right 8.197177e-01	k: 16287	n:20000
KS ci ratio: 6.352878e-01	ci left: 1.302895e-03	ci right 2.549089e-03	k: 37	n:20000
OR4K1   20000 perm   4 sec   (5520 perm/sec)   p_kst 1.850000e-03   p_cons 8.143500e-01   p_joint 2.115000e-02

Joint ci ratio: 1.829841e-01	ci left: 1.368681e-02	ci right 1.647492e-02	k: 451	n:30000
Cons ci ratio: 1.085924e-02	ci left: 8.084064e-01	ci right 8.172663e-01	k: 24386	n:30000
KS ci ratio: 5.098300e-01	ci left: 1.468378e-03	ci right 2.498574e-03	k: 58	n:30000
OR4K1   30000 perm   6 sec   (5236 perm/sec)   p_kst 1.933333e-03   p_cons 8.128667e-01   p_joint 1.503333e-02

Joint ci ratio: 1.318334e-01	ci left: 2.019768e-02	ci right 2.307236e-02	k: 864	n:40000
Cons ci ratio: 9.387073e-03	ci left: 8.095721e-01	ci right 8.172324e-01	k: 32537	n:40000
KS ci ratio: 4.272524e-01	ci left: 1.653054e-03	ci right 2.571635e-03	k: 83	n:40000
OR4K1   40000 perm   8 sec   (4920 perm/sec)   p_kst 2.075000e-03   p_cons 8.134250e-01   p_joint 2.160000e-02

Joint ci ratio: 1.484154e-01	ci left: 1.273795e-02	ci right 1.479907e-02	k: 687	n:50000
Cons ci ratio: 8.405570e-03	ci left: 8.096348e-01	ci right 8.164889e-01	k: 40654	n:50000
KS ci ratio: 3.559286e-01	ci left: 1.990227e-03	ci right 2.869137e-03	k: 120	n:50000
OR4K1   50000 perm   11 sec   (4693 perm/sec)   p_kst 2.400000e-03   p_cons 8.130800e-01   p_joint 1.374000e-02

Joint ci ratio: 1.231737e-01	ci left: 1.557661e-02	ci right 1.763720e-02	k: 995	n:60000
Cons ci ratio: 7.686141e-03	ci left: 8.094206e-01	ci right 8.156825e-01	k: 48754	n:60000
KS ci ratio: 3.251420e-01	ci left: 2.024388e-03	ci right 2.824957e-03	k: 144	n:60000
OR4K1   60000 perm   13 sec   (4600 perm/sec)   p_kst 2.400000e-03   p_cons 8.125667e-01   p_joint 1.658333e-02

Joint ci ratio: 9.143388e-02	ci left: 2.441461e-02	ci right 2.676779e-02	k: 1790	n:70000
Cons ci ratio: 7.116197e-03	ci left: 8.096460e-01	ci right 8.154424e-01	k: 56879	n:70000
KS ci ratio: 3.105207e-01	ci left: 1.919226e-03	ci right 2.637316e-03	k: 158	n:70000
OR4K1   70000 perm   16 sec   (4497 perm/sec)   p_kst 2.257143e-03   p_cons 8.125571e-01   p_joint 2.557143e-02

Joint ci ratio: 8.941200e-02	ci left: 2.241243e-02	ci right 2.452232e-02	k: 1876	n:80000
Cons ci ratio: 6.664935e-03	ci left: 8.094510e-01	ci right 8.148764e-01	k: 64974	n:80000
KS ci ratio: 2.902372e-01	ci left: 1.945183e-03	ci right 2.616728e-03	k: 181	n:80000
OR4K1   80000 perm   18 sec   (4413 perm/sec)   p_kst 2.262500e-03   p_cons 8.121750e-01   p_joint 2.345000e-02

Joint ci ratio: 8.876164e-02	ci left: 2.026879e-02	ci right 2.216225e-02	k: 1908	n:90000
Cons ci ratio: 6.287589e-03	ci left: 8.094206e-01	ci right 8.145370e-01	k: 73079	n:90000
KS ci ratio: 2.768762e-01	ci left: 1.914832e-03	ci right 2.540167e-03	k: 199	n:90000
OR4K1   90000 perm   21 sec   (4333 perm/sec)   p_kst 2.211111e-03   p_cons 8.119889e-01   p_joint 2.120000e-02

Joint ci ratio: 9.879295e-02	ci left: 1.473369e-02	ci right 1.627460e-02	k: 1549	n:100000
Cons ci ratio: 5.761209e-03	ci left: 8.199868e-01	ci right 8.247345e-01	k: 82237	n:100000
KS ci ratio: 2.627997e-01	ci left: 1.928477e-03	ci right 2.520988e-03	k: 221	n:100000
OR4K1   100000 perm   24 sec   (4175 perm/sec)   p_kst 2.210000e-03   p_cons 8.223700e-01   p_joint 1.549000e-02

Joint ci ratio: 9.655202e-02	ci left: 1.405031e-02	ci right 1.548453e-02	k: 1623	n:110000
Cons ci ratio: 5.491846e-03	ci left: 8.201650e-01	ci right 8.246907e-01	k: 90468	n:110000
KS ci ratio: 2.565345e-01	ci left: 1.846642e-03	ci right 2.398318e-03	k: 232	n:110000
OR4K1   110000 perm   27 sec   (4040 perm/sec)   p_kst 2.109091e-03   p_cons 8.224364e-01   p_joint 1.475455e-02

Joint ci ratio: 1.073401e-01	ci left: 1.040131e-02	ci right 1.158916e-02	k: 1318	n:120000
Cons ci ratio: 5.255844e-03	ci left: 8.203848e-01	ci right 8.247163e-01	k: 98707	n:120000
KS ci ratio: 2.307099e-01	ci left: 2.123220e-03	ci right 2.684593e-03	k: 287	n:120000
OR4K1   120000 perm   30 sec   (3979 perm/sec)   p_kst 2.391667e-03   p_cons 8.225583e-01   p_joint 1.098333e-02

Joint ci ratio: 1.067743e-01	ci left: 9.713322e-03	ci right 1.081638e-02	k: 1333	n:130000
Cons ci ratio: 5.041342e-03	ci left: 8.209529e-01	ci right 8.251096e-01	k: 106995	n:130000
KS ci ratio: 2.209502e-01	ci left: 2.148589e-03	ci right 2.689373e-03	k: 313	n:130000
OR4K1   130000 perm   33 sec   (3917 perm/sec)   p_kst 2.407692e-03   p_cons 8.230385e-01   p_joint 1.025385e-02

Joint ci ratio: 9.441035e-02	ci left: 1.158965e-02	ci right 1.274497e-02	k: 1702	n:140000
Cons ci ratio: 4.862886e-03	ci left: 8.207322e-01	ci right 8.247401e-01	k: 115184	n:140000
KS ci ratio: 2.148819e-01	ci left: 2.116669e-03	ci right 2.632858e-03	k: 331	n:140000
OR4K1   140000 perm   36 sec   (3861 perm/sec)   p_kst 2.364286e-03   p_cons 8.227429e-01   p_joint 1.215714e-02

Joint ci ratio: 8.143253e-02	ci left: 1.459343e-02	ci right 1.583874e-02	k: 2281	n:150000
Cons ci ratio: 4.703836e-03	ci left: 8.204363e-01	ci right 8.243112e-01	k: 123357	n:150000
KS ci ratio: 2.057812e-01	ci left: 2.165033e-03	ci right 2.667843e-03	k: 361	n:150000
OR4K1   150000 perm   39 sec   (3807 perm/sec)   p_kst 2.406667e-03   p_cons 8.223800e-01   p_joint 1.520667e-02

Joint ci ratio: 8.132735e-02	ci left: 1.373007e-02	ci right 1.490012e-02	k: 2289	n:160000
Cons ci ratio: 4.550551e-03	ci left: 8.207506e-01	ci right 8.245002e-01	k: 131621	n:160000
KS ci ratio: 2.011176e-01	ci left: 2.130552e-03	ci right 2.612763e-03	k: 378	n:160000
OR4K1   160000 perm   43 sec   (3749 perm/sec)   p_kst 2.362500e-03   p_cons 8.226313e-01   p_joint 1.430625e-02

Joint ci ratio: 8.274658e-02	ci left: 1.248996e-02	ci right 1.357380e-02	k: 2214	n:170000
Cons ci ratio: 4.411861e-03	ci left: 8.209942e-01	ci right 8.246301e-01	k: 139879	n:170000
KS ci ratio: 1.957687e-01	ci left: 2.122617e-03	ci right 2.588732e-03	k: 399	n:170000
OR4K1   170000 perm   46 sec   (3694 perm/sec)   p_kst 2.347059e-03   p_cons 8.228176e-01   p_joint 1.302353e-02

Joint ci ratio: 8.238244e-02	ci left: 1.191019e-02	ci right 1.293894e-02	k: 2235	n:180000
Cons ci ratio: 4.282997e-03	ci left: 8.213571e-01	ci right 8.248880e-01	k: 148163	n:180000
KS ci ratio: 1.915102e-01	ci left: 2.099843e-03	ci right 2.549759e-03	k: 417	n:180000
OR4K1   180000 perm   49 sec   (3639 perm/sec)   p_kst 2.316667e-03   p_cons 8.231278e-01   p_joint 1.241667e-02

Joint ci ratio: 8.029243e-02	ci left: 1.189175e-02	ci right 1.289163e-02	k: 2353	n:190000
Cons ci ratio: 4.168029e-03	ci left: 8.214559e-01	ci right 8.248921e-01	k: 156404	n:190000
KS ci ratio: 1.868746e-01	ci left: 2.094617e-03	ci right 2.531317e-03	k: 438	n:190000
OR4K1   190000 perm   53 sec   (3586 perm/sec)   p_kst 2.305263e-03   p_cons 8.231789e-01   p_joint 1.238421e-02

Joint ci ratio: 7.994046e-02	ci left: 1.140484e-02	ci right 1.235938e-02	k: 2375	n:200000
Cons ci ratio: 4.063872e-03	ci left: 8.214004e-01	ci right 8.247502e-01	k: 164616	n:200000
KS ci ratio: 1.833610e-01	ci left: 2.070944e-03	ci right 2.493688e-03	k: 455	n:200000
OR4K1   200000 perm   57 sec   (3533 perm/sec)   p_kst 2.275000e-03   p_cons 8.230800e-01   p_joint 1.187500e-02

Joint ci ratio: 7.322832e-02	ci left: 1.296868e-02	ci right 1.395910e-02	k: 2826	n:210000
Cons ci ratio: 3.963196e-03	ci left: 8.216427e-01	ci right 8.249102e-01	k: 172889	n:210000
KS ci ratio: 1.789046e-01	ci left: 2.076887e-03	ci right 2.489425e-03	k: 478	n:210000
OR4K1   210000 perm   60 sec   (3484 perm/sec)   p_kst 2.276190e-03   p_cons 8.232810e-01   p_joint 1.345714e-02

Joint ci ratio: 7.252677e-02	ci left: 1.262902e-02	ci right 1.358387e-02	k: 2882	n:220000
Cons ci ratio: 3.871580e-03	ci left: 8.217179e-01	ci right 8.249099e-01	k: 181130	n:220000
KS ci ratio: 1.740643e-01	ci left: 2.099792e-03	ci right 2.504409e-03	k: 505	n:220000
OR4K1   220000 perm   64 sec   (3432 perm/sec)   p_kst 2.295455e-03   p_cons 8.233182e-01   p_joint 1.310000e-02

Joint ci ratio: 7.244599e-02	ci left: 1.211397e-02	ci right 1.302881e-02	k: 2890	n:230000
Cons ci ratio: 3.787961e-03	ci left: 8.216390e-01	ci right 8.247615e-01	k: 189337	n:230000
KS ci ratio: 1.708871e-01	ci left: 2.087538e-03	ci right 2.481695e-03	k: 524	n:230000
OR4K1   230000 perm   68 sec   (3385 perm/sec)   p_kst 2.278261e-03   p_cons 8.232043e-01   p_joint 1.256522e-02

Joint ci ratio: 7.473528e-02	ci left: 1.090958e-02	ci right 1.176062e-02	k: 2719	n:240000
Cons ci ratio: 3.712877e-03	ci left: 8.213040e-01	ci right 8.243632e-01	k: 197481	n:240000
KS ci ratio: 1.674156e-01	ci left: 2.088343e-03	ci right 2.473834e-03	k: 546	n:240000
OR4K1   240000 perm   72 sec   (3334 perm/sec)   p_kst 2.275000e-03   p_cons 8.228375e-01   p_joint 1.132917e-02

Joint ci ratio: 7.417559e-02	ci left: 1.063801e-02	ci right 1.146138e-02	k: 2761	n:250000
Cons ci ratio: 3.638180e-03	ci left: 8.213095e-01	ci right 8.243070e-01	k: 205703	n:250000
KS ci ratio: 1.640031e-01	ci left: 2.092995e-03	ci right 2.470692e-03	k: 569	n:250000
OR4K1   250000 perm   76 sec   (3288 perm/sec)   p_kst 2.276000e-03   p_cons 8.228120e-01   p_joint 1.104400e-02

Joint ci ratio: 7.388123e-02	ci left: 1.031562e-02	ci right 1.111073e-02	k: 2784	n:260000
Cons ci ratio: 3.564851e-03	ci left: 8.215583e-01	ci right 8.244960e-01	k: 213988	n:260000
KS ci ratio: 1.601160e-01	ci left: 2.115822e-03	ci right 2.487719e-03	k: 597	n:260000
OR4K1   260000 perm   80 sec   (3241 perm/sec)   p_kst 2.296154e-03   p_cons 8.230308e-01   p_joint 1.070769e-02

Joint ci ratio: 7.370908e-02	ci left: 9.984389e-03	ci right 1.075210e-02	k: 2798	n:270000
Cons ci ratio: 3.496047e-03	ci left: 8.217668e-01	ci right 8.246485e-01	k: 222267	n:270000
KS ci ratio: 1.571229e-01	ci left: 2.119263e-03	ci right 2.484145e-03	k: 620	n:270000
OR4K1   270000 perm   84 sec   (3198 perm/sec)   p_kst 2.296296e-03   p_cons 8.232111e-01   p_joint 1.036296e-02

Joint ci ratio: 7.348457e-02	ci left: 9.690852e-03	ci right 1.043363e-02	k: 2816	n:280000
Cons ci ratio: 3.431959e-03	ci left: 8.218857e-01	ci right 8.247147e-01	k: 230525	n:280000
KS ci ratio: 1.552612e-01	ci left: 2.095050e-03	ci right 2.451092e-03	k: 635	n:280000
OR4K1   280000 perm   89 sec   (3154 perm/sec)   p_kst 2.267857e-03   p_cons 8.233036e-01   p_joint 1.005714e-02

Joint ci ratio: 6.832172e-02	ci left: 1.084049e-02	ci right 1.161070e-02	k: 3254	n:290000
Cons ci ratio: 3.371230e-03	ci left: 8.220003e-01	ci right 8.247795e-01	k: 238784	n:290000
KS ci ratio: 1.520658e-01	ci left: 2.112332e-03	ci right 2.463250e-03	k: 662	n:290000
OR4K1   290000 perm   93 sec   (3112 perm/sec)   p_kst 2.282759e-03   p_cons 8.233931e-01   p_joint 1.122069e-02

Joint ci ratio: 7.066500e-02	ci left: 9.794393e-03	ci right 1.051512e-02	k: 3045	n:300000
Cons ci ratio: 3.314716e-03	ci left: 8.220106e-01	ci right 8.247431e-01	k: 247014	n:300000
KS ci ratio: 1.492769e-01	ci left: 2.122114e-03	ci right 2.467613e-03	k: 687	n:300000
OR4K1   300000 perm   98 sec   (3071 perm/sec)   p_kst 2.290000e-03   p_cons 8.233800e-01   p_joint 1.015000e-02

Joint ci ratio: 6.938833e-02	ci left: 9.836585e-03	ci right 1.054681e-02	k: 3158	n:310000
Cons ci ratio: 3.259288e-03	ci left: 8.221695e-01	ci right 8.248567e-01	k: 255290	n:310000
KS ci ratio: 1.470500e-01	ci left: 2.118889e-03	ci right 2.458265e-03	k: 708	n:310000
OR4K1   310000 perm   102 sec   (3032 perm/sec)   p_kst 2.283871e-03   p_cons 8.235161e-01   p_joint 1.018710e-02

Joint ci ratio: 6.525867e-02	ci left: 1.078598e-02	ci right 1.151666e-02	k: 3567	n:320000
Cons ci ratio: 3.210307e-03	ci left: 8.219771e-01	ci right 8.246233e-01	k: 263457	n:320000
KS ci ratio: 1.455205e-01	ci left: 2.097831e-03	ci right 2.430036e-03	k: 723	n:320000
OR4K1   320000 perm   107 sec   (2992 perm/sec)   p_kst 2.259375e-03   p_cons 8.233031e-01   p_joint 1.114688e-02

Joint ci ratio: 6.422259e-02	ci left: 1.080496e-02	ci right 1.152487e-02	k: 3683	n:330000
Cons ci ratio: 3.160437e-03	ci left: 8.220764e-01	ci right 8.246816e-01	k: 271716	n:330000
KS ci ratio: 1.429752e-01	ci left: 2.110206e-03	ci right 2.438027e-03	k: 749	n:330000
OR4K1   330000 perm   112 sec   (2954 perm/sec)   p_kst 2.269697e-03   p_cons 8.233818e-01   p_joint 1.116061e-02

Joint ci ratio: 6.387489e-02	ci left: 1.060579e-02	ci right 1.130846e-02	k: 3724	n:340000
Cons ci ratio: 3.113261e-03	ci left: 8.221288e-01	ci right 8.246951e-01	k: 279961	n:340000
KS ci ratio: 1.401072e-01	ci left: 2.136091e-03	ci right 2.460721e-03	k: 780	n:340000
OR4K1   340000 perm   117 sec   (2909 perm/sec)   p_kst 2.294118e-03   p_cons 8.234147e-01   p_joint 1.095294e-02

Joint ci ratio: 6.350696e-02	ci left: 1.042645e-02	ci right 1.111311e-02	k: 3768	n:350000
Cons ci ratio: 3.070306e-03	ci left: 8.219721e-01	ci right 8.245025e-01	k: 288134	n:350000
KS ci ratio: 1.381748e-01	ci left: 2.135728e-03	ci right 2.455458e-03	k: 802	n:350000
OR4K1   350000 perm   122 sec   (2870 perm/sec)   p_kst 2.291429e-03   p_cons 8.232400e-01   p_joint 1.076571e-02

Joint ci ratio: 6.230015e-02	ci left: 1.053876e-02	ci right 1.121915e-02	k: 3915	n:360000
Cons ci ratio: 3.028357e-03	ci left: 8.218941e-01	ci right 8.243896e-01	k: 296332	n:360000
KS ci ratio: 1.360725e-01	ci left: 2.143465e-03	ci right 2.459076e-03	k: 827	n:360000
OR4K1   360000 perm   127 sec   (2832 perm/sec)   p_kst 2.297222e-03   p_cons 8.231444e-01   p_joint 1.087500e-02

Joint ci ratio: 6.180885e-02	ci left: 1.042153e-02	ci right 1.108886e-02	k: 3978	n:370000
Cons ci ratio: 2.987525e-03	ci left: 8.218747e-01	ci right 8.243364e-01	k: 304550	n:370000
KS ci ratio: 1.480217e-01	ci left: 1.751834e-03	ci right 2.034437e-03	k: 699	n:370000
OR4K1   370000 perm   132 sec   (2796 perm/sec)   p_kst 1.889189e-03   p_cons 8.231081e-01   p_joint 1.075135e-02

Joint ci ratio: 6.142883e-02	ci left: 1.027681e-02	ci right 1.093068e-02	k: 4028	n:380000
Cons ci ratio: 2.947449e-03	ci left: 8.219410e-01	ci right 8.243698e-01	k: 312800	n:380000
KS ci ratio: 1.462567e-01	ci left: 1.748823e-03	ci right 2.027282e-03	k: 716	n:380000
OR4K1   380000 perm   138 sec   (2763 perm/sec)   p_kst 1.884211e-03   p_cons 8.231579e-01   p_joint 1.060000e-02

Joint ci ratio: 6.104049e-02	ci left: 1.014457e-02	ci right 1.078581e-02	k: 4080	n:390000
Cons ci ratio: 2.909149e-03	ci left: 8.219836e-01	ci right 8.243809e-01	k: 321042	n:390000
KS ci ratio: 1.438677e-01	ci left: 1.763287e-03	ci right 2.039070e-03	k: 740	n:390000
OR4K1   390000 perm   143 sec   (2731 perm/sec)   p_kst 1.897436e-03   p_cons 8.231846e-01   p_joint 1.046154e-02

Joint ci ratio: 6.067415e-02	ci left: 1.001404e-02	ci right 1.064309e-02	k: 4130	n:400000
Cons ci ratio: 2.872625e-03	ci left: 8.219916e-01	ci right 8.243587e-01	k: 329271	n:400000
KS ci ratio: 1.421517e-01	ci left: 1.762595e-03	ci right 2.034702e-03	k: 758	n:400000
OR4K1   400000 perm   148 sec   (2699 perm/sec)   p_kst 1.895000e-03   p_cons 8.231775e-01   p_joint 1.032500e-02

Joint ci ratio: 6.037260e-02	ci left: 9.870660e-03	ci right 1.048751e-02	k: 4172	n:410000
Cons ci ratio: 2.837347e-03	ci left: 8.220092e-01	ci right 8.243472e-01	k: 337504	n:410000
KS ci ratio: 1.403149e-01	ci left: 1.766662e-03	ci right 2.035578e-03	k: 778	n:410000
OR4K1   410000 perm   154 sec   (2661 perm/sec)   p_kst 1.897561e-03   p_cons 8.231805e-01   p_joint 1.017561e-02

Joint ci ratio: 6.057087e-02	ci left: 9.574631e-03	ci right 1.017502e-02	k: 4146	n:420000
Cons ci ratio: 2.803178e-03	ci left: 8.220428e-01	ci right 8.243527e-01	k: 345744	n:420000
KS ci ratio: 1.392477e-01	ci left: 1.752169e-03	ci right 2.016683e-03	k: 790	n:420000
OR4K1   420000 perm   160 sec   (2629 perm/sec)   p_kst 1.880952e-03   p_cons 8.232000e-01   p_joint 9.871429e-03

Joint ci ratio: 5.981078e-02	ci left: 9.594770e-03	ci right 1.018861e-02	k: 4252	n:430000
Cons ci ratio: 2.771586e-03	ci left: 8.219305e-01	ci right 8.242140e-01	k: 353922	n:430000
KS ci ratio: 1.373502e-01	ci left: 1.760814e-03	ci right 2.022715e-03	k: 812	n:430000
OR4K1   430000 perm   166 sec   (2592 perm/sec)   p_kst 1.888372e-03   p_cons 8.230744e-01   p_joint 9.888372e-03

Joint ci ratio: 5.998872e-02	ci left: 9.322939e-03	ci right 9.901728e-03	k: 4228	n:440000
Cons ci ratio: 2.740374e-03	ci left: 8.218941e-01	ci right 8.241517e-01	k: 362131	n:440000
KS ci ratio: 1.354470e-01	ci left: 1.771286e-03	ci right 2.030798e-03	k: 835	n:440000
OR4K1   440000 perm   172 sec   (2559 perm/sec)   p_kst 1.897727e-03   p_cons 8.230250e-01   p_joint 9.609091e-03

Joint ci ratio: 5.697772e-02	ci left: 1.011221e-02	ci right 1.070745e-02	k: 4683	n:450000
Cons ci ratio: 2.811800e-03	ci left: 8.108531e-01	ci right 8.131384e-01	k: 365399	n:450000
KS ci ratio: 1.340121e-01	ci left: 1.770575e-03	ci right 2.027017e-03	k: 853	n:450000
OR4K1   450000 perm   178 sec   (2531 perm/sec)   p_kst 1.895556e-03   p_cons 8.119978e-01   p_joint 1.040667e-02

Joint ci ratio: 5.477070e-02	ci left: 1.071130e-02	ci right 1.131662e-02	k: 5065	n:460000
Cons ci ratio: 2.780058e-03	ci left: 8.109768e-01	ci right 8.132366e-01	k: 373570	n:460000
KS ci ratio: 1.322426e-01	ci left: 1.780420e-03	ci right 2.034615e-03	k: 876	n:460000
OR4K1   460000 perm   185 sec   (2490 perm/sec)   p_kst 1.904348e-03   p_cons 8.121087e-01   p_joint 1.101087e-02

Joint ci ratio: 5.411165e-02	ci left: 1.074365e-02	ci right 1.134325e-02	k: 5189	n:470000
Cons ci ratio: 2.750709e-03	ci left: 8.109461e-01	ci right 8.131820e-01	k: 381671	n:470000
KS ci ratio: 1.307599e-01	ci left: 1.783692e-03	ci right 2.035278e-03	k: 896	n:470000
OR4K1   470000 perm   191 sec   (2466 perm/sec)   p_kst 1.906383e-03   p_cons 8.120660e-01   p_joint 1.104043e-02

Joint ci ratio: 5.472884e-02	ci left: 1.028549e-02	ci right 1.086628e-02	k: 5075	n:480000
Cons ci ratio: 2.722382e-03	ci left: 8.109043e-01	ci right 8.131169e-01	k: 389766	n:480000
KS ci ratio: 1.297520e-01	ci left: 1.774748e-03	ci right 2.022993e-03	k: 910	n:480000
OR4K1   480000 perm   197 sec   (2441 perm/sec)   p_kst 1.895833e-03   p_cons 8.120125e-01   p_joint 1.057292e-02

Joint ci ratio: 5.457209e-02	ci left: 1.013595e-02	ci right 1.070660e-02	k: 5105	n:490000
Cons ci ratio: 2.694462e-03	ci left: 8.109154e-01	ci right 8.131054e-01	k: 397886	n:490000
KS ci ratio: 1.286973e-01	ci left: 1.768151e-03	ci right 2.013309e-03	k: 925	n:490000
OR4K1   490000 perm   203 sec   (2412 perm/sec)   p_kst 1.887755e-03   p_cons 8.120122e-01   p_joint 1.041837e-02

Joint ci ratio: 5.510916e-02	ci left: 9.741832e-03	ci right 1.029587e-02	k: 5008	n:500000
Cons ci ratio: 2.667907e-03	ci left: 8.108661e-01	ci right 8.130343e-01	k: 405976	n:500000
KS ci ratio: 1.276679e-01	ci left: 1.761825e-03	ci right 2.004005e-03	k: 940	n:500000
OR4K1   500000 perm   210 sec   (2385 perm/sec)   p_kst 1.880000e-03   p_cons 8.119520e-01   p_joint 1.001600e-02

Joint ci ratio: 5.466452e-02	ci left: 9.709389e-03	ci right 1.025698e-02	k: 5090	n:510000
Cons ci ratio: 2.643055e-03	ci left: 8.107107e-01	ci right 8.128583e-01	k: 414011	n:510000
KS ci ratio: 1.266629e-01	ci left: 1.755755e-03	ci right 1.995058e-03	k: 955	n:510000
OR4K1   510000 perm   218 sec   (2338 perm/sec)   p_kst 1.872549e-03   p_cons 8.117863e-01   p_joint 9.980392e-03

Joint ci ratio: 5.435265e-02	ci left: 9.634575e-03	ci right 1.017475e-02	k: 5149	n:520000
Cons ci ratio: 2.617219e-03	ci left: 8.107561e-01	ci right 8.128827e-01	k: 422147	n:520000
KS ci ratio: 1.255517e-01	ci left: 1.753652e-03	ci right 1.990415e-03	k: 972	n:520000
OR4K1   520000 perm   225 sec   (2307 perm/sec)   p_kst 1.869231e-03   p_cons 8.118212e-01   p_joint 9.901923e-03

Joint ci ratio: 5.457220e-02	ci left: 9.378313e-03	ci right 9.906313e-03	k: 5109	n:530000
Cons ci ratio: 2.593246e-03	ci left: 8.106675e-01	ci right 8.127744e-01	k: 430213	n:530000
KS ci ratio: 1.247219e-01	ci left: 1.744324e-03	ci right 1.978156e-03	k: 985	n:530000
OR4K1   530000 perm   232 sec   (2280 perm/sec)   p_kst 1.858491e-03   p_cons 8.117226e-01   p_joint 9.639623e-03

Joint ci ratio: 5.408770e-02	ci left: 9.372696e-03	ci right 9.895548e-03	k: 5201	n:540000
Cons ci ratio: 2.568784e-03	ci left: 8.107178e-01	ci right 8.128048e-01	k: 438352	n:540000
KS ci ratio: 1.239706e-01	ci left: 1.733552e-03	ci right 1.964438e-03	k: 997	n:540000
OR4K1   540000 perm   239 sec   (2258 perm/sec)   p_kst 1.846296e-03   p_cons 8.117630e-01   p_joint 9.631481e-03

Joint ci ratio: 5.364659e-02	ci left: 9.356539e-03	ci right 9.874101e-03	k: 5287	n:550000
Cons ci ratio: 2.544470e-03	ci left: 8.108300e-01	ci right 8.128976e-01	k: 446526	n:550000
KS ci ratio: 1.234779e-01	ci left: 1.716127e-03	ci right 1.943717e-03	k: 1005	n:550000
OR4K1   550000 perm   246 sec   (2231 perm/sec)   p_kst 1.827273e-03   p_cons 8.118655e-01   p_joint 9.612727e-03

Joint ci ratio: 5.216294e-02	ci left: 9.723419e-03	ci right 1.024595e-02	k: 5590	n:560000
Cons ci ratio: 2.521497e-03	ci left: 8.108579e-01	ci right 8.129068e-01	k: 454655	n:560000
KS ci ratio: 1.219709e-01	ci left: 1.728755e-03	ci right 1.955020e-03	k: 1030	n:560000
OR4K1   560000 perm   253 sec   (2209 perm/sec)   p_kst 1.839286e-03   p_cons 8.118839e-01   p_joint 9.982143e-03

Joint ci ratio: 5.169344e-02	ci left: 9.729458e-03	ci right 1.024747e-02	k: 5692	n:570000
Cons ci ratio: 2.499781e-03	ci left: 8.108057e-01	ci right 8.128368e-01	k: 462739	n:570000
KS ci ratio: 1.204036e-01	ci left: 1.744359e-03	ci right 1.969524e-03	k: 1057	n:570000
OR4K1   570000 perm   260 sec   (2189 perm/sec)   p_kst 1.854386e-03   p_cons 8.118228e-01   p_joint 9.985965e-03

Joint ci ratio: 5.178067e-02	ci left: 9.531050e-03	ci right 1.003938e-02	k: 5674	n:580000
Cons ci ratio: 2.478112e-03	ci left: 8.108176e-01	ci right 8.128310e-01	k: 470859	n:580000
KS ci ratio: 1.196712e-01	ci left: 1.736025e-03	ci right 1.958654e-03	k: 1070	n:580000
OR4K1   580000 perm   267 sec   (2170 perm/sec)   p_kst 1.844828e-03   p_cons 8.118259e-01   p_joint 9.782759e-03

Joint ci ratio: 5.139775e-02	ci left: 9.511714e-03	ci right 1.001515e-02	k: 5759	n:590000
Cons ci ratio: 2.457134e-03	ci left: 8.108121e-01	ci right 8.128085e-01	k: 478969	n:590000
KS ci ratio: 1.188422e-01	ci left: 1.731265e-03	ci right 1.951638e-03	k: 1085	n:590000
OR4K1   590000 perm   274 sec   (2152 perm/sec)   p_kst 1.838983e-03   p_cons 8.118119e-01   p_joint 9.761017e-03

Joint ci ratio: 5.029826e-02	ci left: 9.769523e-03	ci right 1.027522e-02	k: 6012	n:600000
Cons ci ratio: 2.436999e-03	ci left: 8.107669e-01	ci right 8.127468e-01	k: 487055	n:600000
KS ci ratio: 1.175499e-01	ci left: 1.741229e-03	ci right 1.960292e-03	k: 1109	n:600000
OR4K1   600000 perm   281 sec   (2133 perm/sec)   p_kst 1.848333e-03   p_cons 8.117583e-01   p_joint 1.002000e-02

Joint ci ratio: 4.986869e-02	ci left: 9.777725e-03	ci right 1.027940e-02	k: 6116	n:610000
Cons ci ratio: 2.417623e-03	ci left: 8.106887e-01	ci right 8.126526e-01	k: 495120	n:610000
KS ci ratio: 1.169202e-01	ci left: 1.731779e-03	ci right 1.948406e-03	k: 1121	n:610000
OR4K1   610000 perm   289 sec   (2113 perm/sec)   p_kst 1.837705e-03   p_cons 8.116721e-01   p_joint 1.002623e-02

Joint ci ratio: 4.972111e-02	ci left: 9.678942e-03	ci right 1.017404e-02	k: 6153	n:620000
Cons ci ratio: 2.397587e-03	ci left: 8.107553e-01	ci right 8.127031e-01	k: 503273	n:620000
KS ci ratio: 1.159935e-01	ci left: 1.732034e-03	ci right 1.946858e-03	k: 1139	n:620000
OR4K1   620000 perm   296 sec   (2091 perm/sec)   p_kst 1.837097e-03   p_cons 8.117306e-01   p_joint 9.924194e-03

Joint ci ratio: 4.955862e-02	ci left: 9.589569e-03	ci right 1.007845e-02	k: 6194	n:630000
Cons ci ratio: 2.378054e-03	ci left: 8.108183e-01	ci right 8.127503e-01	k: 511425	n:630000
KS ci ratio: 1.147910e-01	ci left: 1.741537e-03	ci right 1.955149e-03	k: 1163	n:630000
OR4K1   630000 perm   304 sec   (2073 perm/sec)   p_kst 1.846032e-03   p_cons 8.117857e-01   p_joint 9.831746e-03

Joint ci ratio: 4.912789e-02	ci left: 9.607945e-03	ci right 1.009338e-02	k: 6303	n:640000
Cons ci ratio: 2.359606e-03	ci left: 8.107995e-01	ci right 8.127164e-01	k: 519526	n:640000
KS ci ratio: 1.139136e-01	ci left: 1.741646e-03	ci right 1.953529e-03	k: 1181	n:640000
OR4K1   640000 perm   312 sec   (2051 perm/sec)   p_kst 1.845312e-03   p_cons 8.117594e-01   p_joint 9.848437e-03

Joint ci ratio: 4.879280e-02	ci left: 9.592336e-03	ci right 1.007359e-02	k: 6390	n:650000
Cons ci ratio: 2.341109e-03	ci left: 8.108430e-01	ci right 8.127450e-01	k: 527667	n:650000
KS ci ratio: 1.131506e-01	ci left: 1.738768e-03	ci right 1.948789e-03	k: 1197	n:650000
OR4K1   650000 perm   321 sec   (2026 perm/sec)   p_kst 1.841538e-03   p_cons 8.117954e-01   p_joint 9.830769e-03

Joint ci ratio: 4.971176e-02	ci left: 9.101251e-03	ci right 9.566708e-03	k: 6159	n:660000
Cons ci ratio: 2.323086e-03	ci left: 8.108792e-01	ci right 8.127666e-01	k: 535804	n:660000
KS ci ratio: 1.121715e-01	ci left: 1.743345e-03	ci right 1.951976e-03	k: 1218	n:660000
OR4K1   660000 perm   330 sec   (2001 perm/sec)   p_kst 1.845455e-03   p_cons 8.118242e-01   p_joint 9.331818e-03

Joint ci ratio: 5.091776e-02	ci left: 8.545326e-03	ci right 8.993265e-03	k: 5874	n:670000
Cons ci ratio: 2.306250e-03	ci left: 8.108111e-01	ci right 8.126847e-01	k: 543872	n:670000
KS ci ratio: 1.117149e-01	ci left: 1.731832e-03	ci right 1.938186e-03	k: 1228	n:670000
OR4K1   670000 perm   338 sec   (1984 perm/sec)   p_kst 1.832836e-03   p_cons 8.117493e-01   p_joint 8.767164e-03

Joint ci ratio: 5.148539e-02	ci left: 8.235252e-03	ci right 8.671892e-03	k: 5747	n:680000
Cons ci ratio: 2.289026e-03	ci left: 8.108453e-01	ci right 8.127049e-01	k: 552008	n:680000
KS ci ratio: 1.109057e-01	ci left: 1.732097e-03	ci right 1.936890e-03	k: 1246	n:680000
OR4K1   680000 perm   346 sec   (1964 perm/sec)   p_kst 1.832353e-03   p_cons 8.117765e-01   p_joint 8.451471e-03

Joint ci ratio: 5.345041e-02	ci left: 7.527987e-03	ci right 7.942829e-03	k: 5336	n:690000
Cons ci ratio: 2.272074e-03	ci left: 8.108931e-01	ci right 8.127390e-01	k: 560154	n:690000
KS ci ratio: 1.099833e-01	ci left: 1.736588e-03	ci right 1.940094e-03	k: 1267	n:690000
OR4K1   690000 perm   354 sec   (1948 perm/sec)   p_kst 1.836232e-03   p_cons 8.118174e-01   p_joint 7.733333e-03

Joint ci ratio: 5.296554e-02	ci left: 7.558584e-03	ci right 7.971219e-03	k: 5434	n:700000
Cons ci ratio: 2.255619e-03	ci left: 8.109224e-01	ci right 8.127550e-01	k: 568288	n:700000
KS ci ratio: 1.090835e-01	ci left: 1.740958e-03	ci right 1.943200e-03	k: 1288	n:700000
OR4K1   700000 perm   362 sec   (1932 perm/sec)   p_kst 1.840000e-03   p_cons 8.118400e-01   p_joint 7.762857e-03

Joint ci ratio: 5.257509e-02	ci left: 7.564705e-03	ci right 7.974537e-03	k: 5515	n:710000
Cons ci ratio: 2.239528e-03	ci left: 8.109495e-01	ci right 8.127691e-01	k: 576421	n:710000
KS ci ratio: 1.083298e-01	ci left: 1.741101e-03	ci right 1.941872e-03	k: 1306	n:710000
OR4K1   710000 perm   371 sec   (1914 perm/sec)   p_kst 1.839437e-03   p_cons 8.118606e-01   p_joint 7.767606e-03

Joint ci ratio: 5.226378e-02	ci left: 7.550104e-03	ci right 7.956650e-03	k: 5581	n:720000
Cons ci ratio: 2.224402e-03	ci left: 8.108896e-01	ci right 8.126967e-01	k: 584492	n:720000
KS ci ratio: 1.073887e-01	ci left: 1.748002e-03	ci right 1.947707e-03	k: 1329	n:720000
OR4K1   720000 perm   381 sec   (1889 perm/sec)   p_kst 1.845833e-03   p_cons 8.117944e-01   p_joint 7.751389e-03

Joint ci ratio: 5.205555e-02	ci left: 7.507513e-03	ci right 7.910107e-03	k: 5626	n:730000
Cons ci ratio: 2.210490e-03	ci left: 8.107052e-01	ci right 8.125006e-01	k: 592471	n:730000
KS ci ratio: 1.067487e-01	ci left: 1.745387e-03	ci right 1.943531e-03	k: 1345	n:730000
OR4K1   730000 perm   390 sec   (1870 perm/sec)   p_kst 1.842466e-03   p_cons 8.116041e-01   p_joint 7.706849e-03

Joint ci ratio: 5.209561e-02	ci left: 7.395379e-03	ci right 7.792274e-03	k: 5618	n:740000
Cons ci ratio: 2.196067e-03	ci left: 8.106327e-01	ci right 8.124162e-01	k: 600529	n:740000
KS ci ratio: 1.063549e-01	ci left: 1.734954e-03	ci right 1.931141e-03	k: 1355	n:740000
OR4K1   740000 perm   399 sec   (1855 perm/sec)   p_kst 1.831081e-03   p_cons 8.115257e-01   p_joint 7.591892e-03

Joint ci ratio: 5.200045e-02	ci left: 7.324403e-03	ci right 7.716749e-03	k: 5639	n:750000
Cons ci ratio: 2.181722e-03	ci left: 8.105903e-01	ci right 8.123620e-01	k: 608608	n:750000
KS ci ratio: 1.054257e-01	ci left: 1.742974e-03	ci right 1.938239e-03	k: 1379	n:750000
OR4K1   750000 perm   408 sec   (1839 perm/sec)   p_kst 1.838667e-03   p_cons 8.114773e-01   p_joint 7.518667e-03

Joint ci ratio: 5.198912e-02	ci left: 7.231916e-03	ci right 7.619221e-03	k: 5642	n:760000
Cons ci ratio: 2.167533e-03	ci left: 8.105661e-01	ci right 8.123262e-01	k: 616700	n:760000
KS ci ratio: 1.048199e-01	ci left: 1.740539e-03	ci right 1.934342e-03	k: 1395	n:760000
OR4K1   760000 perm   417 sec   (1824 perm/sec)   p_kst 1.835526e-03   p_cons 8.114474e-01   p_joint 7.423684e-03

Joint ci ratio: 5.198236e-02	ci left: 7.140550e-03	ci right 7.522910e-03	k: 5644	n:770000
Cons ci ratio: 2.153654e-03	ci left: 8.105374e-01	ci right 8.122862e-01	k: 624788	n:770000
KS ci ratio: 1.040034e-01	ci left: 1.745760e-03	ci right 1.938538e-03	k: 1417	n:770000
OR4K1   770000 perm   425 sec   (1811 perm/sec)   p_kst 1.840260e-03   p_cons 8.114130e-01   p_joint 7.329870e-03

Joint ci ratio: 5.081461e-02	ci left: 7.379343e-03	ci right 7.765353e-03	k: 5905	n:780000
Cons ci ratio: 2.139500e-03	ci left: 8.105866e-01	ci right 8.123239e-01	k: 632936	n:780000
KS ci ratio: 9.678437e-02	ci left: 1.997119e-03	ci right 2.201479e-03	k: 1636	n:780000
OR4K1   780000 perm   434 sec   (1797 perm/sec)   p_kst 2.097436e-03   p_cons 8.114564e-01   p_joint 7.570513e-03

Outputting figure to mutsig2_images.part000000000122/OR4K1.4_940_780000_0.0020974_0.81146_0.0075705.png
                gene_name: OR4K1
               theta_stop: 0.097 
                    nperm: 780000 
                     p_ks: 0.0021 
        ci_ks_bounds_left: 0.0020 
       ci_ks_bounds_right: 0.0022 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.0076 
     ci_joint_bounds_left: 0.0074 
    ci_joint_bounds_right: 0.0078 

Current progress: 34 percent done.
OR4K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.573716e-02	ci left: 4.136894e-01	ci right 4.331553e-01	k: 4234	n:10000
Cons ci ratio: 3.344976e-02	ci left: 5.688503e-01	ci right 5.883039e-01	k: 5786	n:10000
KS ci ratio: 7.731236e-02	ci left: 1.965332e-01	ci right 2.124394e-01	k: 2044	n:10000
OR4K2   10000 perm   2 sec   (6413 perm/sec)   p_kst 2.044000e-01   p_cons 5.786000e-01   p_joint 4.234000e-01

Outputting figure to mutsig2_images.part000000000122/OR4K2.4_949_10000_0.2044_0.5786_0.4234.png
                gene_name: OR4K2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 35 percent done.
OR4K5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.733738e-02	ci left: 3.970506e-01	ci right 4.164037e-01	k: 4067	n:10000
KS ci ratio: 1.983924e-02	ci left: 7.880677e-01	ci right 8.039595e-01	k: 7961	n:10000
OR4K5   10000 perm   2 sec   (5709 perm/sec)   p_kst 7.961000e-01   p_cons 4.067000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR4K5.4_976_10000_0.7961_0.4067_1.png
                gene_name: OR4K5
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
OR4L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.841699e-02	ci left: 8.115144e-01	ci right 8.266992e-01	k: 8192	n:10000
KS ci ratio: 9.075657e-03	ci left: 9.447135e-01	ci right 9.534225e-01	k: 9492	n:10000
OR4L1   10000 perm   2 sec   (6421 perm/sec)   p_kst 9.492000e-01   p_cons 8.192000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR4L1.4_943_10000_0.9492_0.8192_1.png
                gene_name: OR4L1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
OR4X1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.996985e-02	ci left: 4.803561e-01	ci right 5.000496e-01	k: 4902	n:10000
Cons ci ratio: 1.803680e-02	ci left: 8.177134e-01	ci right 8.326966e-01	k: 8253	n:10000
KS ci ratio: 7.822696e-02	ci left: 1.927894e-01	ci right 2.085854e-01	k: 2006	n:10000
OR4X1   10000 perm   2 sec   (6036 perm/sec)   p_kst 2.006000e-01   p_cons 8.253000e-01   p_joint 4.902000e-01

Outputting figure to mutsig2_images.part000000000122/OR4X1.4_922_10000_0.2006_0.8253_0.4902.png
                gene_name: OR4X1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 40 percent done.
OR4X2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.330761e-02	ci left: 7.300714e-01	ci right 7.473894e-01	k: 7388	n:10000
Cons ci ratio: 4.977580e-02	ci left: 3.731590e-01	ci right 3.923094e-01	k: 3827	n:10000
KS ci ratio: 1.914040e-02	ci left: 7.996335e-01	ci right 8.151870e-01	k: 8075	n:10000
OR4X2   10000 perm   2 sec   (6097 perm/sec)   p_kst 8.075000e-01   p_cons 3.827000e-01   p_joint 7.388000e-01

Outputting figure to mutsig2_images.part000000000122/OR4X2.4_916_10000_0.8075_0.3827_0.7388.png
                gene_name: OR4X2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 42 percent done.
OR51A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.370219e-02	ci left: 2.123080e-01	ci right 2.286552e-01	k: 2204	n:10000
Cons ci ratio: 7.931618e-02	ci left: 1.884559e-01	ci right 2.041214e-01	k: 1962	n:10000
KS ci ratio: 5.343254e-02	ci left: 3.404477e-01	ci right 3.592399e-01	k: 3498	n:10000
OR51A4   10000 perm   2 sec   (5711 perm/sec)   p_kst 3.498000e-01   p_cons 1.962000e-01   p_joint 2.204000e-01

Outputting figure to mutsig2_images.part000000000122/OR51A4.4_946_10000_0.3498_0.1962_0.2204.png
                gene_name: OR51A4
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 43 percent done.
OR51B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.769921e-02	ci left: 3.065949e-01	ci right 3.249125e-01	k: 3157	n:10000
Cons ci ratio: 7.532587e-02	ci left: 2.050098e-01	ci right 2.211576e-01	k: 2130	n:10000
KS ci ratio: 3.977048e-02	ci left: 4.828546e-01	ci right 5.025497e-01	k: 4927	n:10000
OR51B2   10000 perm   2 sec   (5920 perm/sec)   p_kst 4.927000e-01   p_cons 2.130000e-01   p_joint 3.157000e-01

Outputting figure to mutsig2_images.part000000000122/OR51B2.4_943_10000_0.4927_0.213_0.3157.png
                gene_name: OR51B2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 45 percent done.
OR56A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.954562e-02	ci left: 7.929363e-01	ci right 8.086881e-01	k: 8009	n:10000
KS ci ratio: 2.361561e-02	ci left: 7.249193e-01	ci right 7.423444e-01	k: 7337	n:10000
OR56A1   10000 perm   2 sec   (5638 perm/sec)   p_kst 7.337000e-01   p_cons 8.009000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR56A1.4_961_10000_0.7337_0.8009_1.png
                gene_name: OR56A1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
OR56A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.926594e-02	ci left: 1.886528e-01	ci right 2.043244e-01	k: 1964	n:10000
Cons ci ratio: 3.913147e-02	ci left: 4.909512e-01	ci right 5.106484e-01	k: 5008	n:10000
KS ci ratio: 1.159911e-01	ci left: 9.652432e-02	ci right 1.085084e-01	k: 1024	n:10000
OR56A3   10000 perm   2 sec   (5961 perm/sec)   p_kst 1.024000e-01   p_cons 5.008000e-01   p_joint 1.964000e-01

Joint ci ratio: 6.586617e-02	ci left: 1.454720e-01	ci right 1.554299e-01	k: 3008	n:20000
Cons ci ratio: 2.958935e-02	ci left: 4.604154e-01	ci right 4.742941e-01	k: 9347	n:20000
KS ci ratio: 8.449849e-02	ci left: 9.303020e-02	ci right 1.012873e-01	k: 1942	n:20000
OR56A3   20000 perm   4 sec   (5220 perm/sec)   p_kst 9.710000e-02   p_cons 4.673500e-01   p_joint 1.504000e-01

Outputting figure to mutsig2_images.part000000000122/OR56A3.4_952_20000_0.0971_0.46735_0.1504.png
                gene_name: OR56A3
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 48 percent done.
OR5AK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.741446e-02	ci left: 8.277812e-01	ci right 8.424231e-01	k: 8352	n:10000
Cons ci ratio: 5.641285e-03	ci left: 9.768488e-01	ci right 9.824669e-01	k: 9798	n:10000
KS ci ratio: 3.071196e-02	ci left: 6.100009e-01	ci right 6.291294e-01	k: 6196	n:10000
OR5AK2   10000 perm   2 sec   (5892 perm/sec)   p_kst 6.196000e-01   p_cons 9.798000e-01   p_joint 8.352000e-01

Outputting figure to mutsig2_images.part000000000122/OR5AK2.4_934_10000_0.6196_0.9798_0.8352.png
                gene_name: OR5AK2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 49 percent done.
OR5AS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.615064e-02	ci left: 6.828465e-01	ci right 7.010415e-01	k: 6920	n:10000
Cons ci ratio: 2.497861e-02	ci left: 7.022067e-01	ci right 7.200701e-01	k: 7112	n:10000
KS ci ratio: 3.021250e-02	ci left: 6.177371e-01	ci right 6.367887e-01	k: 6273	n:10000
OR5AS1   10000 perm   2 sec   (6168 perm/sec)   p_kst 6.273000e-01   p_cons 7.112000e-01   p_joint 6.920000e-01

Outputting figure to mutsig2_images.part000000000122/OR5AS1.4_979_10000_0.6273_0.7112_0.692.png
                gene_name: OR5AS1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 51 percent done.
OR4F15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.423087e-02	ci left: 8.771523e-01	ci right 8.898233e-01	k: 8836	n:10000
KS ci ratio: 1.013606e-02	ci left: 9.324734e-01	ci right 9.420699e-01	k: 9374	n:10000
OR4F15   10000 perm   2 sec   (5856 perm/sec)   p_kst 9.374000e-01   p_cons 8.836000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR4F15.3_943_10000_0.9374_0.8836_1.png
                gene_name: OR4F15
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
OR4K17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.083034e-01	ci left: 3.062918e-02	ci right 3.784546e-02	k: 341	n:10000
Cons ci ratio: 4.602876e-01	ci left: 5.549202e-03	ci right 8.947365e-03	k: 71	n:10000
KS ci ratio: 2.268002e-02	ci left: 7.405823e-01	ci right 7.576724e-01	k: 7492	n:10000
OR4K17   10000 perm   2 sec   (6398 perm/sec)   p_kst 7.492000e-01   p_cons 7.100000e-03   p_joint 3.410000e-02

Joint ci ratio: 1.107954e-01	ci left: 5.562767e-02	ci right 6.220129e-02	k: 1177	n:20000
Cons ci ratio: 2.868611e-01	ci left: 7.923549e-03	ci right 1.062202e-02	k: 184	n:20000
KS ci ratio: 1.606507e-02	ci left: 7.424764e-01	ci right 7.545512e-01	k: 14971	n:20000
OR4K17   20000 perm   4 sec   (5402 perm/sec)   p_kst 7.485500e-01   p_cons 9.200000e-03   p_joint 5.885000e-02

Joint ci ratio: 1.037771e-01	ci left: 4.303921e-02	ci right 4.778266e-02	k: 1361	n:30000
Cons ci ratio: 2.434693e-01	ci left: 7.523634e-03	ci right 9.639855e-03	k: 256	n:30000
KS ci ratio: 1.322106e-02	ci left: 7.405978e-01	ci right 7.504879e-01	k: 22367	n:30000
OR4K17   30000 perm   6 sec   (5170 perm/sec)   p_kst 7.455667e-01   p_cons 8.533333e-03   p_joint 4.536667e-02

Joint ci ratio: 1.061812e-01	ci left: 3.119779e-02	ci right 3.472044e-02	k: 1317	n:40000
Cons ci ratio: 2.104389e-01	ci left: 7.694740e-03	ci right 9.527670e-03	k: 343	n:40000
KS ci ratio: 1.148047e-02	ci left: 7.402460e-01	ci right 7.488185e-01	k: 29782	n:40000
OR4K17   40000 perm   8 sec   (5006 perm/sec)   p_kst 7.445500e-01   p_cons 8.575000e-03   p_joint 3.292500e-02

Joint ci ratio: 8.210577e-02	ci left: 4.180705e-02	ci right 4.540618e-02	k: 2179	n:50000
Cons ci ratio: 2.016654e-01	ci left: 6.743468e-03	ci right 8.274545e-03	k: 374	n:50000
KS ci ratio: 1.025793e-02	ci left: 7.410951e-01	ci right 7.487564e-01	k: 37247	n:50000
OR4K17   50000 perm   10 sec   (4863 perm/sec)   p_kst 7.449400e-01   p_cons 7.480000e-03   p_joint 4.358000e-02

Joint ci ratio: 8.063018e-02	ci left: 3.636978e-02	ci right 3.944179e-02	k: 2273	n:60000
Cons ci ratio: 1.859779e-01	ci left: 6.666223e-03	ci right 8.048738e-03	k: 440	n:60000
KS ci ratio: 9.349964e-03	ci left: 7.420113e-01	ci right 7.489983e-01	k: 44731	n:60000
OR4K17   60000 perm   13 sec   (4685 perm/sec)   p_kst 7.455167e-01   p_cons 7.333333e-03   p_joint 3.788333e-02

Joint ci ratio: 8.375582e-02	ci left: 2.907054e-02	ci right 3.162573e-02	k: 2123	n:70000
Cons ci ratio: 1.726052e-01	ci left: 6.682726e-03	ci right 7.958626e-03	k: 511	n:70000
KS ci ratio: 8.620597e-03	ci left: 7.438483e-01	ci right 7.503027e-01	k: 52296	n:70000
OR4K17   70000 perm   15 sec   (4578 perm/sec)   p_kst 7.470857e-01   p_cons 7.300000e-03   p_joint 3.032857e-02

Joint ci ratio: 8.539722e-02	ci left: 2.456550e-02	ci right 2.676908e-02	k: 2052	n:80000
Cons ci ratio: 1.591640e-01	ci left: 6.925811e-03	ci right 8.135315e-03	k: 601	n:80000
KS ci ratio: 8.075530e-03	ci left: 7.435080e-01	ci right 7.495491e-01	k: 59723	n:80000
OR4K17   80000 perm   18 sec   (4479 perm/sec)   p_kst 7.465375e-01   p_cons 7.512500e-03   p_joint 2.565000e-02

Joint ci ratio: 8.516200e-02	ci left: 2.201961e-02	ci right 2.398908e-02	k: 2069	n:90000
Cons ci ratio: 1.494236e-01	ci left: 7.021579e-03	ci right 8.166058e-03	k: 682	n:90000
KS ci ratio: 7.612204e-03	ci left: 7.437560e-01	ci right 7.494503e-01	k: 67195	n:90000
OR4K17   90000 perm   21 sec   (4389 perm/sec)   p_kst 7.466111e-01   p_cons 7.577778e-03   p_joint 2.298889e-02

Joint ci ratio: 7.781340e-02	ci left: 2.378607e-02	ci right 2.572163e-02	k: 2474	n:100000
Cons ci ratio: 1.413704e-01	ci left: 7.090350e-03	ci right 8.178501e-03	k: 762	n:100000
KS ci ratio: 7.227510e-03	ci left: 7.435910e-01	ci right 7.489947e-01	k: 74630	n:100000
OR4K17   100000 perm   23 sec   (4307 perm/sec)   p_kst 7.463000e-01   p_cons 7.620000e-03   p_joint 2.474000e-02

Joint ci ratio: 7.712566e-02	ci left: 2.205975e-02	ci right 2.383825e-02	k: 2523	n:110000
Cons ci ratio: 1.344930e-01	ci left: 7.147972e-03	ci right 8.187330e-03	k: 842	n:110000
KS ci ratio: 6.892816e-03	ci left: 7.436264e-01	ci right 7.487788e-01	k: 82083	n:110000
OR4K17   110000 perm   26 sec   (4226 perm/sec)   p_kst 7.462091e-01   p_cons 7.654545e-03   p_joint 2.293636e-02

Joint ci ratio: 7.165453e-02	ci left: 2.346070e-02	ci right 2.521239e-02	k: 2919	n:120000
Cons ci ratio: 1.294526e-01	ci left: 7.092197e-03	ci right 8.081823e-03	k: 909	n:120000
KS ci ratio: 6.594011e-03	ci left: 7.440453e-01	ci right 7.489761e-01	k: 89582	n:120000
OR4K17   120000 perm   29 sec   (4153 perm/sec)   p_kst 7.465167e-01   p_cons 7.575000e-03   p_joint 2.432500e-02

Joint ci ratio: 7.143597e-02	ci left: 2.182913e-02	ci right 2.345380e-02	k: 2942	n:130000
Cons ci ratio: 1.246824e-01	ci left: 7.075435e-03	ci right 8.023653e-03	k: 980	n:130000
KS ci ratio: 6.343584e-03	ci left: 7.436476e-01	ci right 7.483876e-01	k: 96983	n:130000
OR4K17   130000 perm   32 sec   (4079 perm/sec)   p_kst 7.460231e-01   p_cons 7.538462e-03   p_joint 2.263077e-02

Joint ci ratio: 7.176955e-02	ci left: 2.011493e-02	ci right 2.161929e-02	k: 2920	n:140000
Cons ci ratio: 1.201734e-01	ci left: 7.089360e-03	ci right 8.002643e-03	k: 1055	n:140000
KS ci ratio: 6.105599e-03	ci left: 7.441840e-01	ci right 7.487487e-01	k: 104506	n:140000
OR4K17   140000 perm   35 sec   (4007 perm/sec)   p_kst 7.464714e-01   p_cons 7.535714e-03   p_joint 2.085714e-02

Joint ci ratio: 6.833521e-02	ci left: 2.073259e-02	ci right 2.220599e-02	k: 3219	n:150000
Cons ci ratio: 1.152006e-01	ci left: 7.218516e-03	ci right 8.107340e-03	k: 1148	n:150000
KS ci ratio: 5.899475e-03	ci left: 7.442036e-01	ci right 7.486136e-01	k: 111962	n:150000
OR4K17   150000 perm   38 sec   (3936 perm/sec)   p_kst 7.464133e-01   p_cons 7.653333e-03   p_joint 2.146000e-02

Joint ci ratio: 6.625077e-02	ci left: 2.070262e-02	ci right 2.212729e-02	k: 3425	n:160000
Cons ci ratio: 1.116620e-01	ci left: 7.216737e-03	ci right 8.076248e-03	k: 1222	n:160000
KS ci ratio: 5.713004e-03	ci left: 7.442167e-01	ci right 7.484868e-01	k: 119417	n:160000
OR4K17   160000 perm   41 sec   (3867 perm/sec)   p_kst 7.463563e-01   p_cons 7.637500e-03   p_joint 2.140625e-02

Joint ci ratio: 6.450965e-02	ci left: 2.057258e-02	ci right 2.194970e-02	k: 3613	n:170000
Cons ci ratio: 1.090679e-01	ci left: 7.129684e-03	ci right 7.957831e-03	k: 1281	n:170000
KS ci ratio: 5.544371e-03	ci left: 7.441478e-01	ci right 7.482909e-01	k: 126858	n:170000
OR4K17   170000 perm   45 sec   (3805 perm/sec)   p_kst 7.462235e-01   p_cons 7.535294e-03   p_joint 2.125294e-02

Joint ci ratio: 6.084602e-02	ci left: 2.185265e-02	ci right 2.322946e-02	k: 4056	n:180000
Cons ci ratio: 1.055032e-01	ci left: 7.209377e-03	ci right 8.017713e-03	k: 1369	n:180000
KS ci ratio: 5.389286e-03	ci left: 7.441272e-01	ci right 7.481538e-01	k: 134306	n:180000
OR4K17   180000 perm   48 sec   (3740 perm/sec)   p_kst 7.461444e-01   p_cons 7.605556e-03   p_joint 2.253333e-02

Joint ci ratio: 6.079877e-02	ci left: 2.075916e-02	ci right 2.206602e-02	k: 4067	n:190000
Cons ci ratio: 1.025861e-01	ci left: 7.234911e-03	ci right 8.022328e-03	k: 1448	n:190000
KS ci ratio: 5.248566e-03	ci left: 7.439625e-01	ci right 7.478827e-01	k: 141726	n:190000
OR4K17   190000 perm   52 sec   (3681 perm/sec)   p_kst 7.459263e-01   p_cons 7.621053e-03   p_joint 2.140526e-02

Joint ci ratio: 6.054400e-02	ci left: 1.990806e-02	ci right 2.115590e-02	k: 4105	n:200000
Cons ci ratio: 9.996421e-02	ci left: 7.248416e-03	ci right 8.015958e-03	k: 1525	n:200000
KS ci ratio: 5.117577e-03	ci left: 7.438707e-01	ci right 7.476922e-01	k: 149157	n:200000
OR4K17   200000 perm   55 sec   (3617 perm/sec)   p_kst 7.457850e-01   p_cons 7.625000e-03   p_joint 2.052500e-02

Outputting figure to mutsig2_images.part000000000122/OR4K17.3_1036_200000_0.74579_0.007625_0.020525.png
                gene_name: OR4K17
               theta_stop: 0.100 
                    nperm: 200000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.0076 
      ci_cons_bounds_left: 0.0072 
     ci_cons_bounds_right: 0.0080 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 54 percent done.
OR4M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.561906e-02	ci left: 2.037281e-01	ci right 2.198401e-01	k: 2117	n:10000
Cons ci ratio: 1.171404e-01	ci left: 9.477139e-02	ci right 1.066624e-01	k: 1006	n:10000
KS ci ratio: 3.506812e-02	ci left: 5.455956e-01	ci right 5.651722e-01	k: 5554	n:10000
OR4M1   10000 perm   2 sec   (5082 perm/sec)   p_kst 5.554000e-01   p_cons 1.006000e-01   p_joint 2.117000e-01

Joint ci ratio: 5.821652e-02	ci left: 1.793925e-01	ci right 1.901993e-01	k: 3695	n:20000
Cons ci ratio: 7.999126e-02	ci left: 1.028957e-01	ci right 1.115189e-01	k: 2143	n:20000
KS ci ratio: 2.500248e-02	ci left: 5.444251e-01	ci right 5.582600e-01	k: 11027	n:20000
OR4M1   20000 perm   4 sec   (4556 perm/sec)   p_kst 5.513500e-01   p_cons 1.071500e-01   p_joint 1.847500e-01

Outputting figure to mutsig2_images.part000000000122/OR4M1.3_946_20000_0.55135_0.10715_0.18475.png
                gene_name: OR4M1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 55 percent done.
OR4S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.905420e-02	ci left: 8.010545e-01	ci right 8.165651e-01	k: 8089	n:10000
KS ci ratio: 1.867131e-02	ci left: 8.073497e-01	ci right 8.226663e-01	k: 8151	n:10000
OR4S1   10000 perm   1 sec   (6719 perm/sec)   p_kst 8.151000e-01   p_cons 8.089000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR4S1.3_934_10000_0.8151_0.8089_1.png
                gene_name: OR4S1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
OR4S2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.701460e-01	ci left: 4.609774e-02	ci right 5.476655e-02	k: 503	n:10000
Cons ci ratio: 7.041197e-02	ci left: 2.281991e-01	ci right 2.449546e-01	k: 2365	n:10000
KS ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
OR4S2   10000 perm   2 sec   (6530 perm/sec)   p_kst 1.390000e-02   p_cons 2.365000e-01   p_joint 5.030000e-02

Joint ci ratio: 1.291237e-01	ci left: 4.119905e-02	ci right 4.693445e-02	k: 880	n:20000
Cons ci ratio: 4.898946e-02	ci left: 2.365233e-01	ci right 2.484517e-01	k: 4849	n:20000
KS ci ratio: 2.405811e-01	ci left: 1.152325e-02	ci right 1.472062e-02	k: 261	n:20000
OR4S2   20000 perm   4 sec   (5662 perm/sec)   p_kst 1.305000e-02   p_cons 2.424500e-01   p_joint 4.400000e-02

Joint ci ratio: 1.363805e-01	ci left: 2.496955e-02	ci right 2.865619e-02	k: 803	n:30000
Cons ci ratio: 4.018580e-02	ci left: 2.359372e-01	ci right 2.456464e-01	k: 7223	n:30000
KS ci ratio: 1.951809e-01	ci left: 1.197088e-02	ci right 1.459130e-02	k: 397	n:30000
OR4S2   30000 perm   6 sec   (5351 perm/sec)   p_kst 1.323333e-02   p_cons 2.407667e-01   p_joint 2.676667e-02

Joint ci ratio: 1.529780e-01	ci left: 1.491337e-02	ci right 1.740758e-02	k: 645	n:40000
Cons ci ratio: 3.497417e-02	ci left: 2.348024e-01	ci right 2.431856e-01	k: 9559	n:40000
KS ci ratio: 1.689786e-01	ci left: 1.215240e-02	ci right 1.441908e-02	k: 530	n:40000
OR4S2   40000 perm   8 sec   (5149 perm/sec)   p_kst 1.325000e-02   p_cons 2.389750e-01   p_joint 1.612500e-02

Joint ci ratio: 1.325151e-01	ci left: 1.605913e-02	ci right 1.835742e-02	k: 859	n:50000
Cons ci ratio: 3.129564e-02	ci left: 2.350881e-01	ci right 2.425823e-01	k: 11941	n:50000
KS ci ratio: 1.512260e-01	ci left: 1.225646e-02	ci right 1.428063e-02	k: 662	n:50000
OR4S2   50000 perm   10 sec   (4991 perm/sec)   p_kst 1.324000e-02   p_cons 2.388200e-01   p_joint 1.718000e-02

Joint ci ratio: 1.336576e-01	ci left: 1.318794e-02	ci right 1.509282e-02	k: 847	n:60000
Cons ci ratio: 2.855634e-02	ci left: 2.355753e-01	ci right 2.424166e-01	k: 14339	n:60000
KS ci ratio: 1.363747e-01	ci left: 1.265628e-02	ci right 1.452454e-02	k: 814	n:60000
OR4S2   60000 perm   12 sec   (4857 perm/sec)   p_kst 1.356667e-02   p_cons 2.389833e-01   p_joint 1.411667e-02

Joint ci ratio: 1.050215e-01	ci left: 1.848848e-02	ci right 2.055162e-02	k: 1365	n:70000
Cons ci ratio: 2.646090e-02	ci left: 2.355174e-01	ci right 2.418472e-01	k: 16707	n:70000
KS ci ratio: 1.276842e-01	ci left: 1.243678e-02	ci right 1.414678e-02	k: 929	n:70000
OR4S2   70000 perm   15 sec   (4740 perm/sec)   p_kst 1.327143e-02   p_cons 2.386714e-01   p_joint 1.950000e-02

Joint ci ratio: 7.182115e-02	ci left: 3.460915e-02	ci right 3.719965e-02	k: 2871	n:80000
Cons ci ratio: 2.477992e-02	ci left: 2.353137e-01	ci right 2.412303e-01	k: 19061	n:80000
KS ci ratio: 1.189767e-01	ci left: 1.259041e-02	ci right 1.419517e-02	k: 1070	n:80000
OR4S2   80000 perm   17 sec   (4590 perm/sec)   p_kst 1.337500e-02   p_cons 2.382625e-01   p_joint 3.588750e-02

Joint ci ratio: 7.318940e-02	ci left: 2.975720e-02	ci right 3.202872e-02	k: 2779	n:90000
Cons ci ratio: 2.340842e-02	ci left: 2.347781e-01	ci right 2.403500e-01	k: 21380	n:90000
KS ci ratio: 1.125935e-01	ci left: 1.254014e-02	ci right 1.404703e-02	k: 1195	n:90000
OR4S2   90000 perm   21 sec   (4379 perm/sec)   p_kst 1.327778e-02   p_cons 2.375556e-01   p_joint 3.087778e-02

Joint ci ratio: 6.738836e-02	ci left: 3.162594e-02	ci right 3.384127e-02	k: 3272	n:100000
Cons ci ratio: 2.224936e-02	ci left: 2.342375e-01	ci right 2.395177e-01	k: 23687	n:100000
KS ci ratio: 1.063256e-01	ci left: 1.269650e-02	ci right 1.413193e-02	k: 1340	n:100000
OR4S2   100000 perm   23 sec   (4302 perm/sec)   p_kst 1.340000e-02   p_cons 2.368700e-01   p_joint 3.272000e-02

Joint ci ratio: 6.570298e-02	ci left: 3.031460e-02	ci right 3.238293e-02	k: 3447	n:110000
Cons ci ratio: 2.118028e-02	ci left: 2.349333e-01	ci right 2.399715e-01	k: 26119	n:110000
KS ci ratio: 1.020493e-01	ci left: 1.256044e-02	ci right 1.391995e-02	k: 1455	n:110000
OR4S2   110000 perm   26 sec   (4200 perm/sec)   p_kst 1.322727e-02   p_cons 2.374455e-01   p_joint 3.133636e-02

Joint ci ratio: 6.345171e-02	ci left: 2.984604e-02	ci right 3.181005e-02	k: 3698	n:120000
Cons ci ratio: 2.024250e-02	ci left: 2.356841e-01	ci right 2.405119e-01	k: 28571	n:120000
KS ci ratio: 9.777856e-02	ci left: 1.257001e-02	ci right 1.387034e-02	k: 1585	n:120000
OR4S2   120000 perm   29 sec   (4109 perm/sec)   p_kst 1.320833e-02   p_cons 2.380917e-01   p_joint 3.081667e-02

Outputting figure to mutsig2_images.part000000000122/OR4S2.3_940_120000_0.013208_0.23809_0.030817.png
                gene_name: OR4S2
               theta_stop: 0.098 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 58 percent done.
OR51B5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.361591e-02	ci left: 2.663640e-01	ci right 2.839672e-01	k: 2751	n:10000
Cons ci ratio: 4.686983e-02	ci left: 4.018319e-01	ci right 4.212197e-01	k: 4115	n:10000
KS ci ratio: 1.346742e-01	ci left: 7.281740e-02	ci right 8.342992e-02	k: 780	n:10000
OR51B5   10000 perm   2 sec   (5445 perm/sec)   p_kst 7.800000e-02   p_cons 4.115000e-01   p_joint 2.751000e-01

Joint ci ratio: 5.676118e-02	ci left: 1.870559e-01	ci right 1.980337e-01	k: 3850	n:20000
Cons ci ratio: 3.121735e-02	ci left: 4.339032e-01	ci right 4.477140e-01	k: 8816	n:20000
KS ci ratio: 9.493467e-02	ci left: 7.480898e-02	ci right 8.231408e-02	k: 1570	n:20000
OR51B5   20000 perm   4 sec   (4806 perm/sec)   p_kst 7.850000e-02   p_cons 4.408000e-01   p_joint 1.925000e-01

Outputting figure to mutsig2_images.part000000000122/OR51B5.3_943_20000_0.0785_0.4408_0.1925.png
                gene_name: OR51B5
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 60 percent done.
OR51F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.214091e-01	ci left: 8.864084e-02	ci right 1.001967e-01	k: 943	n:10000
Cons ci ratio: 1.015329e-02	ci left: 9.322664e-01	ci right 9.418771e-01	k: 9372	n:10000
KS ci ratio: 2.689486e-01	ci left: 1.799971e-02	ci right 2.368423e-02	k: 207	n:10000
OR51F1   10000 perm   2 sec   (5677 perm/sec)   p_kst 2.070000e-02   p_cons 9.372000e-01   p_joint 9.430000e-02

Joint ci ratio: 1.047818e-01	ci left: 6.196321e-02	ci right 6.886379e-02	k: 1307	n:20000
Cons ci ratio: 7.186473e-03	ci left: 9.335950e-01	ci right 9.403773e-01	k: 18741	n:20000
KS ci ratio: 1.878865e-01	ci left: 1.929613e-02	ci right 2.334471e-02	k: 425	n:20000
OR51F1   20000 perm   4 sec   (4755 perm/sec)   p_kst 2.125000e-02   p_cons 9.370500e-01   p_joint 6.535000e-02

Joint ci ratio: 7.867054e-02	ci left: 7.341855e-02	ci right 7.946379e-02	k: 2292	n:30000
Cons ci ratio: 5.789723e-03	ci left: 9.358241e-01	ci right 9.412906e-01	k: 28158	n:30000
KS ci ratio: 1.482750e-01	ci left: 2.107635e-02	ci right 2.448360e-02	k: 682	n:30000
OR51F1   30000 perm   7 sec   (4550 perm/sec)   p_kst 2.273333e-02   p_cons 9.386000e-01   p_joint 7.640000e-02

Joint ci ratio: 6.016245e-02	ci left: 9.305597e-02	ci right 9.885284e-02	k: 3837	n:40000
Cons ci ratio: 5.265640e-03	ci left: 9.302007e-01	ci right 9.351363e-01	k: 37308	n:40000
KS ci ratio: 1.280989e-01	ci left: 2.140788e-02	ci right 2.436195e-02	k: 914	n:40000
OR51F1   40000 perm   9 sec   (4517 perm/sec)   p_kst 2.285000e-02   p_cons 9.327000e-01   p_joint 9.592500e-02

Joint ci ratio: 6.089228e-02	ci left: 7.420459e-02	ci right 7.888472e-02	k: 3826	n:50000
Cons ci ratio: 4.710355e-03	ci left: 9.304484e-01	ci right 9.348612e-01	k: 46634	n:50000
KS ci ratio: 1.140029e-01	ci left: 2.178158e-02	ci right 2.443419e-02	k: 1154	n:50000
OR51F1   50000 perm   12 sec   (4254 perm/sec)   p_kst 2.308000e-02   p_cons 9.326800e-01   p_joint 7.652000e-02

Joint ci ratio: 5.507170e-02	ci left: 7.571823e-02	ci right 8.002271e-02	k: 4671	n:60000
Cons ci ratio: 4.300895e-03	ci left: 9.306153e-01	ci right 9.346428e-01	k: 55959	n:60000
KS ci ratio: 1.032721e-01	ci left: 2.223766e-02	ci right 2.467540e-02	k: 1406	n:60000
OR51F1   60000 perm   15 sec   (4122 perm/sec)   p_kst 2.343333e-02   p_cons 9.326500e-01   p_joint 7.785000e-02

Joint ci ratio: 4.482645e-02	ci left: 9.627375e-02	ci right 1.007025e-01	k: 6893	n:70000
Cons ci ratio: 3.767702e-03	ci left: 9.374767e-01	ci right 9.410296e-01	k: 65749	n:70000
KS ci ratio: 9.580587e-02	ci left: 2.223698e-02	ci right 2.448849e-02	k: 1634	n:70000
OR51F1   70000 perm   17 sec   (4057 perm/sec)   p_kst 2.334286e-02   p_cons 9.392714e-01   p_joint 9.847143e-02

Outputting figure to mutsig2_images.part000000000122/OR51F1.3_943_70000_0.023343_0.93927_0.098471.png
                gene_name: OR51F1
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 62 percent done.
OR51M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.393873e-02	ci left: 1.412895e-01	ci right 1.553161e-01	k: 1482	n:10000
Cons ci ratio: 8.856681e-02	ci left: 1.564968e-01	ci right 1.710996e-01	k: 1637	n:10000
KS ci ratio: 8.380712e-02	ci left: 1.719241e-01	ci right 1.870631e-01	k: 1794	n:10000
OR51M1   10000 perm   2 sec   (6452 perm/sec)   p_kst 1.794000e-01   p_cons 1.637000e-01   p_joint 1.482000e-01

Outputting figure to mutsig2_images.part000000000122/OR51M1.3_985_10000_0.1794_0.1637_0.1482.png
                gene_name: OR51M1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 63 percent done.
OR51T1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.756954e-03	ci left: 9.584845e-01	ci right 9.660432e-01	k: 9624	n:10000
KS ci ratio: 1.234719e-02	ci left: 9.040153e-01	ci right 9.153447e-01	k: 9098	n:10000
OR51T1   10000 perm   2 sec   (5702 perm/sec)   p_kst 9.098000e-01   p_cons 9.624000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR51T1.3_1069_10000_0.9098_0.9624_1.png
                gene_name: OR51T1
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
OR52A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.331365e-02	ci left: 7.299703e-01	ci right 7.472905e-01	k: 7387	n:10000
KS ci ratio: 1.793042e-02	ci left: 8.194416e-01	ci right 8.343675e-01	k: 8270	n:10000
OR52A1   10000 perm   2 sec   (6307 perm/sec)   p_kst 8.270000e-01   p_cons 7.387000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR52A1.3_943_10000_0.827_0.7387_1.png
                gene_name: OR52A1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
OR52E8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.997954e-03	ci left: 9.656240e-01	ci right 9.724991e-01	k: 9692	n:10000
KS ci ratio: 3.284991e-02	ci left: 5.776768e-01	ci right 5.970723e-01	k: 5874	n:10000
OR52E8   10000 perm   1 sec   (7010 perm/sec)   p_kst 5.874000e-01   p_cons 9.692000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR52E8.3_958_10000_0.5874_0.9692_1.png
                gene_name: OR52E8
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
OR52K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.072499e-02	ci left: 6.098000e-01	ci right 6.289304e-01	k: 6194	n:10000
Cons ci ratio: 1.205181e-02	ci left: 9.080250e-01	ci right 9.191326e-01	k: 9137	n:10000
KS ci ratio: 5.037083e-02	ci left: 3.675878e-01	ci right 3.866839e-01	k: 3771	n:10000
OR52K2   10000 perm   2 sec   (5242 perm/sec)   p_kst 3.771000e-01   p_cons 9.137000e-01   p_joint 6.194000e-01

Outputting figure to mutsig2_images.part000000000122/OR52K2.3_949_10000_0.3771_0.9137_0.6194.png
                gene_name: OR52K2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 69 percent done.
OR52N4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.303352e-02	ci left: 4.436076e-01	ci right 4.632196e-01	k: 4534	n:10000
Cons ci ratio: 1.410433e-01	ci left: 6.662205e-02	ci right 7.682914e-02	k: 716	n:10000
KS ci ratio: 2.992248e-02	ci left: 6.222595e-01	ci right 6.412637e-01	k: 6318	n:10000
OR52N4   10000 perm   2 sec   (6422 perm/sec)   p_kst 6.318000e-01   p_cons 7.160000e-02   p_joint 4.534000e-01

Joint ci ratio: 5.789013e-02	ci left: 1.810732e-01	ci right 1.919181e-01	k: 3729	n:20000
Cons ci ratio: 9.819427e-02	ci left: 7.016491e-02	ci right 7.745958e-02	k: 1475	n:20000
KS ci ratio: 2.160500e-02	ci left: 6.152877e-01	ci right 6.287768e-01	k: 12441	n:20000
OR52N4   20000 perm   4 sec   (5591 perm/sec)   p_kst 6.220500e-01   p_cons 7.375000e-02   p_joint 1.864500e-01

Outputting figure to mutsig2_images.part000000000122/OR52N4.3_970_20000_0.62205_0.07375_0.18645.png
                gene_name: OR52N4
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 71 percent done.
OR5A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.186093e-02	ci left: 2.775527e-01	ci right 2.953719e-01	k: 2864	n:10000
Cons ci ratio: 1.131817e-01	ci left: 1.010066e-01	ci right 1.132234e-01	k: 1070	n:10000
KS ci ratio: 1.822407e-02	ci left: 8.146643e-01	ci right 8.297475e-01	k: 8223	n:10000
OR5A2   10000 perm   2 sec   (6407 perm/sec)   p_kst 8.223000e-01   p_cons 1.070000e-01   p_joint 2.864000e-01

Joint ci ratio: 3.189437e-02	ci left: 4.233738e-01	ci right 4.371465e-01	k: 8605	n:20000
Cons ci ratio: 8.120554e-02	ci left: 1.000967e-01	ci right 1.086187e-01	k: 2086	n:20000
KS ci ratio: 1.280869e-02	ci left: 8.187008e-01	ci right 8.293048e-01	k: 16481	n:20000
OR5A2   20000 perm   4 sec   (5602 perm/sec)   p_kst 8.240500e-01   p_cons 1.043000e-01   p_joint 4.302500e-01

Outputting figure to mutsig2_images.part000000000122/OR5A2.3_979_20000_0.82405_0.1043_0.43025.png
                gene_name: OR5A2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 72 percent done.
OR4D9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.659038e-02	ci left: 4.047210e-01	ci right 4.241289e-01	k: 4144	n:10000
Cons ci ratio: 3.627716e-02	ci left: 5.287694e-01	ci right 5.484081e-01	k: 5386	n:10000
KS ci ratio: 2.549086e-01	ci left: 2.015152e-02	ci right 2.613074e-02	k: 230	n:10000
OR4D9   10000 perm   2 sec   (5394 perm/sec)   p_kst 2.300000e-02   p_cons 5.386000e-01   p_joint 4.144000e-01

Joint ci ratio: 3.282893e-02	ci left: 4.093062e-01	ci right 4.230182e-01	k: 8323	n:20000
Cons ci ratio: 2.729295e-02	ci left: 5.007456e-01	ci right 5.146522e-01	k: 10154	n:20000
KS ci ratio: 1.826955e-01	ci left: 2.044155e-02	ci right 2.459888e-02	k: 449	n:20000
OR4D9   20000 perm   4 sec   (4767 perm/sec)   p_kst 2.245000e-02   p_cons 5.077000e-01   p_joint 4.161500e-01

Joint ci ratio: 3.180371e-02	ci left: 3.307873e-01	ci right 3.415111e-01	k: 10084	n:30000
Cons ci ratio: 2.222282e-02	ci left: 5.034257e-01	ci right 5.147725e-01	k: 15273	n:30000
KS ci ratio: 1.479429e-01	ci left: 2.117272e-02	ci right 2.458721e-02	k: 685	n:30000
OR4D9   30000 perm   7 sec   (4401 perm/sec)   p_kst 2.283333e-02   p_cons 5.091000e-01   p_joint 3.361333e-01

Joint ci ratio: 3.540006e-02	ci left: 2.304542e-01	ci right 2.387843e-01	k: 9384	n:40000
Cons ci ratio: 1.927948e-02	ci left: 5.033128e-01	ci right 5.131360e-01	k: 20329	n:40000
KS ci ratio: 1.290402e-01	ci left: 2.109311e-02	ci right 2.402677e-02	k: 901	n:40000
OR4D9   40000 perm   9 sec   (4416 perm/sec)   p_kst 2.252500e-02   p_cons 5.082250e-01   p_joint 2.346000e-01

Joint ci ratio: 3.259355e-02	ci left: 2.207096e-01	ci right 2.280424e-01	k: 11218	n:50000
Cons ci ratio: 1.721337e-02	ci left: 5.047277e-01	ci right 5.135112e-01	k: 25456	n:50000
KS ci ratio: 1.168297e-01	ci left: 2.073210e-02	ci right 2.332381e-02	k: 1100	n:50000
OR4D9   50000 perm   12 sec   (4292 perm/sec)   p_kst 2.200000e-02   p_cons 5.091200e-01   p_joint 2.243600e-01

Joint ci ratio: 2.514409e-02	ci left: 2.846609e-01	ci right 2.919262e-01	k: 17297	n:60000
Cons ci ratio: 1.567295e-02	ci left: 5.064080e-01	ci right 5.144243e-01	k: 30625	n:60000
KS ci ratio: 1.062892e-01	ci left: 2.098723e-02	ci right 2.335930e-02	k: 1329	n:60000
OR4D9   60000 perm   14 sec   (4316 perm/sec)   p_kst 2.215000e-02   p_cons 5.104167e-01   p_joint 2.882833e-01

Joint ci ratio: 2.622897e-02	ci left: 2.387170e-01	ci right 2.450758e-01	k: 16932	n:70000
Cons ci ratio: 1.372844e-02	ci left: 5.343410e-01	ci right 5.417416e-01	k: 37663	n:70000
KS ci ratio: 9.871974e-02	ci left: 2.094002e-02	ci right 2.312842e-02	k: 1541	n:70000
OR4D9   70000 perm   16 sec   (4256 perm/sec)   p_kst 2.201429e-02   p_cons 5.380429e-01   p_joint 2.418857e-01

Outputting figure to mutsig2_images.part000000000122/OR4D9.2_949_70000_0.022014_0.53804_0.24189.png
                gene_name: OR4D9
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 74 percent done.
OR4K13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.038770e-02	ci left: 7.789437e-01	ci right 7.950888e-01	k: 7871	n:10000
Cons ci ratio: 4.005790e-02	ci left: 4.792569e-01	ci right 4.989495e-01	k: 4891	n:10000
KS ci ratio: 2.076422e-02	ci left: 7.726617e-01	ci right 7.889744e-01	k: 7809	n:10000
OR4K13   10000 perm   2 sec   (5549 perm/sec)   p_kst 7.809000e-01   p_cons 4.891000e-01   p_joint 7.871000e-01

Outputting figure to mutsig2_images.part000000000122/OR4K13.2_919_10000_0.7809_0.4891_0.7871.png
                gene_name: OR4K13
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 75 percent done.
OR4N2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.293884e-02	ci left: 2.158598e-01	ci right 2.323013e-01	k: 2240	n:10000
Cons ci ratio: 2.554752e-01	ci left: 2.005779e-02	ci right 2.602453e-02	k: 229	n:10000
KS ci ratio: 4.815110e-02	ci left: 3.888849e-01	ci right 4.081742e-01	k: 3985	n:10000
OR4N2   10000 perm   2 sec   (6341 perm/sec)   p_kst 3.985000e-01   p_cons 2.290000e-02   p_joint 2.240000e-01

Joint ci ratio: 8.449849e-02	ci left: 9.303020e-02	ci right 1.012873e-01	k: 1942	n:20000
Cons ci ratio: 1.850223e-01	ci left: 1.991636e-02	ci right 2.402425e-02	k: 438	n:20000
KS ci ratio: 3.406190e-02	ci left: 3.915554e-01	ci right 4.051742e-01	k: 7967	n:20000
OR4N2   20000 perm   4 sec   (5664 perm/sec)   p_kst 3.983500e-01   p_cons 2.190000e-02   p_joint 9.710000e-02

Joint ci ratio: 6.903910e-02	ci left: 9.367345e-02	ci right 1.004048e-01	k: 2910	n:30000
Cons ci ratio: 1.546509e-01	ci left: 1.934319e-02	ci right 2.261716e-02	k: 628	n:30000
KS ci ratio: 2.771874e-02	ci left: 3.944164e-01	ci right 4.055363e-01	k: 11999	n:30000
OR4N2   30000 perm   6 sec   (5409 perm/sec)   p_kst 3.999667e-01   p_cons 2.093333e-02   p_joint 9.700000e-02

Joint ci ratio: 8.943632e-02	ci left: 4.377187e-02	ci right 4.789439e-02	k: 1832	n:40000
Cons ci ratio: 1.339866e-01	ci left: 1.954468e-02	ci right 2.237546e-02	k: 837	n:40000
KS ci ratio: 2.402136e-02	ci left: 3.948447e-01	ci right 4.044699e-01	k: 15986	n:40000
OR4N2   40000 perm   8 sec   (5218 perm/sec)   p_kst 3.996500e-01   p_cons 2.092500e-02   p_joint 4.580000e-02

Joint ci ratio: 6.411531e-02	ci left: 6.732542e-02	ci right 7.180471e-02	k: 3477	n:50000
Cons ci ratio: 1.208769e-01	ci left: 1.935346e-02	ci right 2.186263e-02	k: 1029	n:50000
KS ci ratio: 2.148422e-02	ci left: 3.953824e-01	ci right 4.039892e-01	k: 19984	n:50000
OR4N2   50000 perm   10 sec   (5074 perm/sec)   p_kst 3.996800e-01   p_cons 2.058000e-02   p_joint 6.954000e-02

Joint ci ratio: 7.293442e-02	ci left: 4.425558e-02	ci right 4.762185e-02	k: 2755	n:60000
Cons ci ratio: 1.096677e-01	ci left: 1.970539e-02	ci right 2.200794e-02	k: 1250	n:60000
KS ci ratio: 1.954233e-02	ci left: 3.974743e-01	ci right 4.053352e-01	k: 24084	n:60000
OR4N2   60000 perm   12 sec   (4936 perm/sec)   p_kst 4.014000e-01   p_cons 2.083333e-02   p_joint 4.591667e-02

Joint ci ratio: 5.614040e-02	ci left: 6.328335e-02	ci right 6.695280e-02	k: 4557	n:70000
Cons ci ratio: 1.009863e-01	ci left: 2.000629e-02	ci right 2.214795e-02	k: 1474	n:70000
KS ci ratio: 1.805141e-02	ci left: 3.988641e-01	ci right 4.061440e-01	k: 28175	n:70000
OR4N2   70000 perm   15 sec   (4800 perm/sec)   p_kst 4.025000e-01   p_cons 2.105714e-02   p_joint 6.510000e-02

Joint ci ratio: 5.241317e-02	ci left: 6.363461e-02	ci right 6.707199e-02	k: 5227	n:80000
Cons ci ratio: 9.397313e-02	ci left: 2.028621e-02	ci right 2.229871e-02	k: 1702	n:80000
KS ci ratio: 1.687684e-02	ci left: 3.993487e-01	ci right 4.061583e-01	k: 32220	n:80000
OR4N2   80000 perm   17 sec   (4678 perm/sec)   p_kst 4.027500e-01   p_cons 2.127500e-02   p_joint 6.533750e-02

Outputting figure to mutsig2_images.part000000000122/OR4N2.2_928_80000_0.40275_0.021275_0.065338.png
                gene_name: OR4N2
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.067 

Current progress: 77 percent done.
OR4P4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.571973e-01	ci left: 1.977670e-02	ci right 2.570584e-02	k: 226	n:10000
Cons ci ratio: 1.140181e-01	ci left: 9.964203e-02	ci right 1.117887e-01	k: 1056	n:10000
KS ci ratio: 1.685670e-01	ci left: 4.696137e-02	ci right 5.570235e-02	k: 512	n:10000
OR4P4   10000 perm   2 sec   (6159 perm/sec)   p_kst 5.120000e-02   p_cons 1.056000e-01   p_joint 2.260000e-02

Joint ci ratio: 1.351748e-01	ci left: 3.761647e-02	ci right 4.311819e-02	k: 806	n:20000
Cons ci ratio: 8.532785e-02	ci left: 9.136270e-02	ci right 9.955535e-02	k: 1908	n:20000
KS ci ratio: 1.219146e-01	ci left: 4.614611e-02	ci right 5.218582e-02	k: 982	n:20000
OR4P4   20000 perm   4 sec   (5060 perm/sec)   p_kst 4.910000e-02   p_cons 9.540000e-02   p_joint 4.030000e-02

Joint ci ratio: 1.194267e-01	ci left: 3.259274e-02	ci right 3.676467e-02	k: 1039	n:30000
Cons ci ratio: 6.969054e-02	ci left: 9.206559e-02	ci right 9.874633e-02	k: 2861	n:30000
KS ci ratio: 1.002789e-01	ci left: 4.603120e-02	ci right 5.092338e-02	k: 1453	n:30000
OR4P4   30000 perm   6 sec   (5031 perm/sec)   p_kst 4.843333e-02   p_cons 9.536667e-02   p_joint 3.463333e-02

Joint ci ratio: 8.657873e-02	ci left: 4.663549e-02	ci right 5.088032e-02	k: 1949	n:40000
Cons ci ratio: 5.696547e-02	ci left: 1.028266e-01	ci right 1.088807e-01	k: 4233	n:40000
KS ci ratio: 8.657873e-02	ci left: 4.663549e-02	ci right 5.088032e-02	k: 1949	n:40000
OR4P4   40000 perm   8 sec   (4934 perm/sec)   p_kst 4.872500e-02   p_cons 1.058250e-01   p_joint 4.872500e-02

Outputting figure to mutsig2_images.part000000000122/OR4P4.2_943_40000_0.048725_0.10583_0.048725.png
                gene_name: OR4P4
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.051 

Current progress: 78 percent done.
OR51A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.202889e-02	ci left: 9.083336e-01	ci right 9.194239e-01	k: 9140	n:10000
Cons ci ratio: 1.578567e-02	ci left: 8.535544e-01	ci right 8.672349e-01	k: 8605	n:10000
KS ci ratio: 1.361933e-01	ci left: 7.126753e-02	ci right 8.178074e-02	k: 764	n:10000
OR51A2   10000 perm   2 sec   (6610 perm/sec)   p_kst 7.640000e-02   p_cons 8.605000e-01   p_joint 9.140000e-01

Joint ci ratio: 9.008190e-03	ci left: 9.003428e-01	ci right 9.085392e-01	k: 18090	n:20000
Cons ci ratio: 1.112178e-02	ci left: 8.564831e-01	ci right 8.661116e-01	k: 17227	n:20000
KS ci ratio: 9.675099e-02	ci left: 7.216868e-02	ci right 7.955520e-02	k: 1516	n:20000
OR51A2   20000 perm   4 sec   (5708 perm/sec)   p_kst 7.580000e-02   p_cons 8.613500e-01   p_joint 9.045000e-01

Outputting figure to mutsig2_images.part000000000122/OR51A2.2_946_20000_0.0758_0.86135_0.9045.png
                gene_name: OR51A2
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 80 percent done.
OR51B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.457650e-02	ci left: 4.262506e-01	ci right 4.457867e-01	k: 4360	n:10000
Cons ci ratio: 6.772759e-03	ci left: 9.676262e-01	ci right 9.742956e-01	k: 9711	n:10000
KS ci ratio: 1.492827e-01	ci left: 5.966639e-02	ci right 6.938918e-02	k: 644	n:10000
OR51B4   10000 perm   1 sec   (6990 perm/sec)   p_kst 6.440000e-02   p_cons 9.711000e-01   p_joint 4.360000e-01

Joint ci ratio: 2.767220e-02	ci left: 4.938458e-01	ci right 5.077540e-01	k: 10016	n:20000
Cons ci ratio: 4.815123e-03	ci left: 9.683201e-01	ci right 9.730417e-01	k: 19415	n:20000
KS ci ratio: 1.063118e-01	ci left: 6.025648e-02	ci right 6.707105e-02	k: 1272	n:20000
OR51B4   20000 perm   3 sec   (6033 perm/sec)   p_kst 6.360000e-02   p_cons 9.707500e-01   p_joint 5.008000e-01

Joint ci ratio: 2.332349e-02	ci left: 4.792630e-01	ci right 4.906066e-01	k: 14548	n:30000
Cons ci ratio: 3.890031e-03	ci left: 9.693822e-01	ci right 9.731925e-01	k: 29140	n:30000
KS ci ratio: 8.745376e-02	ci left: 6.001521e-02	ci right 6.553650e-02	k: 1882	n:30000
OR51B4   30000 perm   5 sec   (5687 perm/sec)   p_kst 6.273333e-02   p_cons 9.713333e-01   p_joint 4.849333e-01

Outputting figure to mutsig2_images.part000000000122/OR51B4.2_937_30000_0.062733_0.97133_0.48493.png
                gene_name: OR51B4
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 82 percent done.
OR51E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.081274e-02	ci left: 7.718513e-01	ci right 7.881853e-01	k: 7801	n:10000
KS ci ratio: 1.347312e-02	ci left: 8.882113e-01	ci right 9.003580e-01	k: 8944	n:10000
OR51E1   10000 perm   2 sec   (5987 perm/sec)   p_kst 8.944000e-01   p_cons 7.801000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR51E1.2_961_10000_0.8944_0.7801_1.png
                gene_name: OR51E1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
OR51E2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.617042e-01	ci left: 5.099641e-02	ci right 6.006470e-02	k: 554	n:10000
Cons ci ratio: 2.371212e-01	ci left: 2.344048e-02	ci right 2.983930e-02	k: 265	n:10000
KS ci ratio: 2.559995e-02	ci left: 6.919193e-01	ci right 7.099635e-01	k: 7010	n:10000
OR51E2   10000 perm   2 sec   (6590 perm/sec)   p_kst 7.010000e-01   p_cons 2.650000e-02   p_joint 5.540000e-02

Joint ci ratio: 1.034758e-01	ci left: 6.347548e-02	ci right 7.045106e-02	k: 1338	n:20000
Cons ci ratio: 1.670300e-01	ci left: 2.455782e-02	ci right 2.908116e-02	k: 535	n:20000
KS ci ratio: 1.785875e-02	ci left: 7.002853e-01	ci right 7.129546e-01	k: 14133	n:20000
OR51E2   20000 perm   3 sec   (5742 perm/sec)   p_kst 7.066500e-01   p_cons 2.675000e-02   p_joint 6.690000e-02

Joint ci ratio: 1.020239e-01	ci left: 4.450233e-02	ci right 4.931923e-02	k: 1406	n:30000
Cons ci ratio: 1.347532e-01	ci left: 2.558194e-02	ci right 2.931033e-02	k: 822	n:30000
KS ci ratio: 1.467967e-02	ci left: 6.986642e-01	ci right 7.090297e-01	k: 21116	n:30000
OR51E2   30000 perm   6 sec   (5431 perm/sec)   p_kst 7.038667e-01   p_cons 2.740000e-02   p_joint 4.686667e-02

Joint ci ratio: 8.681299e-02	ci left: 4.639066e-02	ci right 5.062520e-02	k: 1939	n:40000
Cons ci ratio: 1.187944e-01	ci left: 2.492365e-02	ci right 2.809559e-02	k: 1059	n:40000
KS ci ratio: 1.277226e-02	ci left: 6.974154e-01	ci right 7.064053e-01	k: 28077	n:40000
OR51E2   40000 perm   8 sec   (5233 perm/sec)   p_kst 7.019250e-01   p_cons 2.647500e-02   p_joint 4.847500e-02

Joint ci ratio: 7.759764e-02	ci left: 4.667257e-02	ci right 5.046006e-02	k: 2427	n:50000
Cons ci ratio: 1.060888e-01	ci left: 2.516815e-02	ci right 2.800718e-02	k: 1328	n:50000
KS ci ratio: 1.146717e-02	ci left: 6.963030e-01	ci right 7.043537e-01	k: 35017	n:50000
OR51E2   50000 perm   10 sec   (5066 perm/sec)   p_kst 7.003400e-01   p_cons 2.656000e-02   p_joint 4.854000e-02

Joint ci ratio: 7.402488e-02	ci left: 4.299477e-02	ci right 4.631613e-02	k: 2678	n:60000
Cons ci ratio: 9.662172e-02	ci left: 2.540844e-02	ci right 2.800428e-02	k: 1601	n:60000
KS ci ratio: 1.046200e-02	ci left: 6.969006e-01	ci right 7.042466e-01	k: 42035	n:60000
OR51E2   60000 perm   12 sec   (4921 perm/sec)   p_kst 7.005833e-01   p_cons 2.668333e-02   p_joint 4.463333e-02

Outputting figure to mutsig2_images.part000000000122/OR51E2.2_967_60000_0.70058_0.026683_0.044633.png
                gene_name: OR51E2
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 85 percent done.
OR51L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.819135e-03	ci left: 9.475226e-01	ci right 9.560117e-01	k: 9519	n:10000
Cons ci ratio: 1.158000e-02	ci left: 9.143035e-01	ci right 9.250505e-01	k: 9198	n:10000
KS ci ratio: 3.637945e-02	ci left: 5.273677e-01	ci right 5.470106e-01	k: 5372	n:10000
OR51L1   10000 perm   2 sec   (5895 perm/sec)   p_kst 5.372000e-01   p_cons 9.198000e-01   p_joint 9.519000e-01

Outputting figure to mutsig2_images.part000000000122/OR51L1.2_952_10000_0.5372_0.9198_0.9519.png
                gene_name: OR51L1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 86 percent done.
OR51Q1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.715515e-02	ci left: 6.664250e-01	ci right 6.848726e-01	k: 6757	n:10000
KS ci ratio: 1.837348e-02	ci left: 8.122256e-01	ci right 8.273876e-01	k: 8199	n:10000
OR51Q1   10000 perm   1 sec   (7026 perm/sec)   p_kst 8.199000e-01   p_cons 6.757000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000122/OR51Q1.2_958_10000_0.8199_0.6757_1.png
                gene_name: OR51Q1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
OR51S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.162976e-02	ci left: 7.581825e-01	ci right 7.748620e-01	k: 7666	n:10000
Cons ci ratio: 3.682062e-02	ci left: 5.213614e-01	ci right 5.410204e-01	k: 5312	n:10000
KS ci ratio: 3.734874e-02	ci left: 5.142557e-01	ci right 5.339302e-01	k: 5241	n:10000
OR51S1   10000 perm   2 sec   (6141 perm/sec)   p_kst 5.241000e-01   p_cons 5.312000e-01   p_joint 7.666000e-01

Outputting figure to mutsig2_images.part000000000122/OR51S1.2_976_10000_0.5241_0.5312_0.7666.png
                gene_name: OR51S1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 89 percent done.
OR52B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.101469e-02	ci left: 1.819585e-01	ci right 1.974227e-01	k: 1896	n:10000
Cons ci ratio: 7.586907e-02	ci left: 2.026437e-01	ci right 2.187252e-01	k: 2106	n:10000
KS ci ratio: 5.651887e-02	ci left: 3.155244e-01	ci right 3.339778e-01	k: 3247	n:10000
OR52B2   10000 perm   2 sec   (5951 perm/sec)   p_kst 3.247000e-01   p_cons 2.106000e-01   p_joint 1.896000e-01

Outputting figure to mutsig2_images.part000000000122/OR52B2.2_976_10000_0.3247_0.2106_0.1896.png
                gene_name: OR52B2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 91 percent done.
OR52I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.220526e-01	ci left: 8.776567e-02	ci right 9.927239e-02	k: 934	n:10000
Cons ci ratio: 1.301200e-01	ci left: 7.776183e-02	ci right 8.868240e-02	k: 831	n:10000
KS ci ratio: 4.921176e-02	ci left: 3.785325e-01	ci right 3.977327e-01	k: 3881	n:10000
OR52I1   10000 perm   2 sec   (5792 perm/sec)   p_kst 3.881000e-01   p_cons 8.310000e-02   p_joint 9.340000e-02

Joint ci ratio: 8.679317e-02	ci left: 8.851906e-02	ci right 9.659985e-02	k: 1850	n:20000
Cons ci ratio: 9.204076e-02	ci left: 7.931024e-02	ci right 8.701145e-02	k: 1662	n:20000
KS ci ratio: 3.507772e-02	ci left: 3.776006e-01	ci right 3.911330e-01	k: 7687	n:20000
OR52I1   20000 perm   4 sec   (5410 perm/sec)   p_kst 3.843500e-01   p_cons 8.310000e-02   p_joint 9.250000e-02

Outputting figure to mutsig2_images.part000000000122/OR52I1.2_979_20000_0.38435_0.0831_0.0925.png
                gene_name: OR52I1
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.097 

Current progress: 92 percent done.
OR52K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.863244e-03	ci left: 9.574375e-01	ci right 9.650907e-01	k: 9614	n:10000
Cons ci ratio: 5.487243e-02	ci left: 3.285285e-01	ci right 3.471661e-01	k: 3378	n:10000
KS ci ratio: 1.972311e-02	ci left: 7.899946e-01	ci right 8.058315e-01	k: 7980	n:10000
OR52K1   10000 perm   2 sec   (6170 perm/sec)   p_kst 7.980000e-01   p_cons 3.378000e-01   p_joint 9.614000e-01

Outputting figure to mutsig2_images.part000000000122/OR52K1.2_949_10000_0.798_0.3378_0.9614.png
                gene_name: OR52K1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 94 percent done.
OR52N5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.145409e-02	ci left: 9.159518e-01	ci right 9.266012e-01	k: 9214	n:10000
Cons ci ratio: 4.042023e-02	ci left: 4.747605e-01	ci right 4.944485e-01	k: 4846	n:10000
KS ci ratio: 3.225041e-02	ci left: 5.866068e-01	ci right 6.059371e-01	k: 5963	n:10000
OR52N5   10000 perm   2 sec   (6256 perm/sec)   p_kst 5.963000e-01   p_cons 4.846000e-01   p_joint 9.214000e-01

Outputting figure to mutsig2_images.part000000000122/OR52N5.2_979_10000_0.5963_0.4846_0.9214.png
                gene_name: OR52N5
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 95 percent done.
OR56B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.148904e-02	ci left: 1.479580e-01	ci right 1.622435e-01	k: 1550	n:10000
Cons ci ratio: 1.050588e-01	ci left: 1.157438e-01	ci right 1.286772e-01	k: 1221	n:10000
KS ci ratio: 4.542018e-02	ci left: 4.170783e-01	ci right 4.365644e-01	k: 4268	n:10000
OR56B1   10000 perm   1 sec   (7059 perm/sec)   p_kst 4.268000e-01   p_cons 1.221000e-01   p_joint 1.550000e-01

Joint ci ratio: 6.745712e-02	ci left: 1.395556e-01	ci right 1.493481e-01	k: 2888	n:20000
Cons ci ratio: 7.273787e-02	ci left: 1.221687e-01	ci right 1.314401e-01	k: 2535	n:20000
KS ci ratio: 3.234730e-02	ci left: 4.164889e-01	ci right 4.302333e-01	k: 8467	n:20000
OR56B1   20000 perm   3 sec   (6063 perm/sec)   p_kst 4.233500e-01   p_cons 1.267500e-01   p_joint 1.444000e-01

Outputting figure to mutsig2_images.part000000000122/OR56B1.2_979_20000_0.42335_0.12675_0.1444.png
                gene_name: OR56B1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 97 percent done.
OR5AC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.863384e-02	ci left: 4.973503e-01	ci right 5.170455e-01	k: 5072	n:10000
Cons ci ratio: 4.188850e-02	ci left: 4.569827e-01	ci right 4.766367e-01	k: 4668	n:10000
KS ci ratio: 5.040300e-02	ci left: 3.672894e-01	ci right 3.863825e-01	k: 3768	n:10000
OR5AC2   10000 perm   2 sec   (6521 perm/sec)   p_kst 3.768000e-01   p_cons 4.668000e-01   p_joint 5.072000e-01

Outputting figure to mutsig2_images.part000000000122/OR5AC2.2_934_10000_0.3768_0.4668_0.5072.png
                gene_name: OR5AC2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 98 percent done.
OR5AU1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.191527e-01	ci left: 2.759554e-02	ci right 3.448123e-02	k: 309	n:10000
Cons ci ratio: 3.652600e-02	ci left: 5.253654e-01	ci right 5.450141e-01	k: 5352	n:10000
KS ci ratio: 1.539269e-01	ci left: 5.619485e-02	ci right 6.566293e-02	k: 608	n:10000
OR5AU1   10000 perm   2 sec   (6347 perm/sec)   p_kst 6.080000e-02   p_cons 5.352000e-01   p_joint 3.090000e-02

Joint ci ratio: 1.569380e-01	ci left: 2.787170e-02	ci right 3.266616e-02	k: 604	n:20000
Cons ci ratio: 2.600917e-02	ci left: 5.248053e-01	ci right 5.386855e-01	k: 10635	n:20000
KS ci ratio: 1.089404e-01	ci left: 5.747851e-02	ci right 6.414988e-02	k: 1215	n:20000
OR5AU1   20000 perm   4 sec   (5505 perm/sec)   p_kst 6.075000e-02   p_cons 5.317500e-01   p_joint 3.020000e-02

Joint ci ratio: 1.309572e-01	ci left: 2.709791e-02	ci right 3.092736e-02	k: 869	n:30000
Cons ci ratio: 2.132731e-02	ci left: 5.239660e-01	ci right 5.352949e-01	k: 15889	n:30000
KS ci ratio: 8.884641e-02	ci left: 5.821980e-02	ci right 6.366561e-02	k: 1827	n:30000
OR5AU1   30000 perm   6 sec   (5122 perm/sec)   p_kst 6.090000e-02   p_cons 5.296333e-01   p_joint 2.896667e-02

Joint ci ratio: 9.050223e-02	ci left: 4.276891e-02	ci right 4.684750e-02	k: 1791	n:40000
Cons ci ratio: 1.838727e-02	ci left: 5.269704e-01	ci right 5.367750e-01	k: 21275	n:40000
KS ci ratio: 7.732146e-02	ci left: 5.803581e-02	ci right 6.272827e-02	k: 2414	n:40000
OR5AU1   40000 perm   8 sec   (4997 perm/sec)   p_kst 6.035000e-02   p_cons 5.318750e-01   p_joint 4.477500e-02

Outputting figure to mutsig2_images.part000000000122/OR5AU1.2_1093_40000_0.06035_0.53187_0.044775.png
                gene_name: OR5AU1
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.047 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000122
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 122 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1646>
Subject: Job 9894060: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1646>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000123> was used as the working directory.
Started at Sat Oct  6 00:22:17 2012
Results reported at Sat Oct  6 00:36:59 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000123.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000123.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 123  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000123.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    908.27 sec.
    Max Memory :      3517 MB
    Max Swap   :      5887 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
123
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 123
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 123: processing genes 10999 - 11088
Calculating significance of each gene.
Using projection method.
10999	OR5B2	4.547853e-01
11000/18030 11000	OR5B21	2.593595e-02
11001	OR5B3	2.797026e-01
11002	OR5C1	2.416071e-01
11003	OR5D13	1.793762e-01
11004	OR5D14	1.785961e-01
11005	OR5D16	2.790293e-01
11006	OR5D18	1.519800e-02
11007	OR5F1	1.189217e-02
11008	OR5H1	1.047233e-01
11009	OR5H14	1.257752e-01
11010	OR5H15	7.416144e-01
11011	OR5H2	4.107228e-02
11012	OR5H6	1.105320e-01
11013	OR5I1	9.314847e-02
11014	OR5J2	6.853878e-01
11015	OR5K1	3.758026e-01
11016	OR5K2	3.000336e-01
11017	OR5K3	1.159087e-02
11018	OR5K4	4.067555e-01
11019	OR5L1	2.348061e-01
11020	OR5L2	7.876427e-01
11021	OR5M1	4.402453e-01
11022	OR5M10	4.661679e-01
11023	OR5M11	6.742736e-01
11024	OR5M3	1.332619e-02
11025	OR5M8	1.315280e-01
11026	OR5M9	1.242367e-02
11027	OR5P2	9.709703e-02
11028	OR5P3	4.409648e-01
11029	OR5R1	1.104120e-01
11030	OR5T1	4.611154e-01
11031	OR5T2	4.958614e-02
11032	OR5T3	4.881122e-01
11033	OR5V1	1.146579e-01
11034	OR5W2	4.863632e-04
11035	OR6A2	3.398348e-01
11036	OR6B1	6.194124e-01
11037	OR6B2	2.180403e-01
11038	OR6B3	3.657013e-03
11039	OR6C1	1
11040	OR6C2	6.256770e-01
11041	OR6C3	2.183121e-01
11042	OR6C4	3.370665e-01
11043	OR6C6	1.432752e-01
11044	OR6C65	1.298578e-01
11045	OR6C68	2.249420e-01
11046	OR6C70	2.377214e-01
11047	OR6C74	2.952639e-01
11048	OR6C75	1.067034e-01
11049	OR6C76	5.344920e-02
11050	OR6F1	1.270195e-01
11051	OR6K2	5.998441e-03
11052	OR6K3	2.889450e-03
11053	OR6K6	1.874226e-01
11054	OR6M1	2.482821e-02
11055	OR6N1	2.258859e-06
11056	OR6N2	1.361442e-02
11057	OR6Q1	1.382881e-01
11058	OR6S1	1.356379e-01
11059	OR6T1	1.607997e-03
11060	OR6V1	4.311420e-01
11061	OR6X1	3.878925e-01
11062	OR6Y1	8.136591e-02
11063	OR7A10	5.918726e-02
11064	OR7A17	2.897363e-01
11065	OR7A5	1.212414e-01
11066	OR7C1	9.309459e-04
11067	OR7C2	7.583279e-01
11068	OR7D2	3.288520e-01
11069	OR7D4	3.676266e-01
11070	OR7E24	7.250800e-01
11071	OR7G1	7.794186e-02
11072	OR7G2	3.098186e-01
11073	OR7G3	3.991353e-01
11074	OR8A1	1
11075	OR8B12	5.892143e-01
11076	OR8B2	2.205874e-01
11077	OR8B3	4.592146e-01
11078	OR8B4	5.828531e-04
11079	OR8B8	5.558198e-02
11080	OR8D1	1
11081	OR8D2	4.947608e-02
11082	OR8D4	6.529238e-01
11083	OR8G1	1
11084	OR8G2	6.952854e-01
11085	OR8G5	1
11086	OR8H1	6.355027e-03
11087	OR8H2	6.979748e-01
11088	OR8H3	5.455400e-01
Done

Running MutSig 2:
Scatter job 123: processing genes 10999 - 11088
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OR6N1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.293560e-02	ci left: 1.749728e-01	ci right 1.902126e-01	k: 1825	n:10000
Cons ci ratio: 7.589188e-02	ci left: 2.025451e-01	ci right 2.186238e-01	k: 2105	n:10000
KS ci ratio: 1.451179e-01	ci left: 6.304562e-02	ci right 7.300781e-02	k: 679	n:10000
OR6N1   10000 perm   2 sec   (4696 perm/sec)   p_kst 6.790000e-02   p_cons 2.105000e-01   p_joint 1.825000e-01

Joint ci ratio: 9.352068e-02	ci left: 7.696131e-02	ci right 8.456110e-02	k: 1614	n:20000
Cons ci ratio: 5.527244e-02	ci left: 1.953658e-01	ci right 2.065212e-01	k: 4018	n:20000
KS ci ratio: 1.001491e-01	ci left: 6.757588e-02	ci right 7.474940e-02	k: 1422	n:20000
OR6N1   20000 perm   7 sec   (2900 perm/sec)   p_kst 7.110000e-02   p_cons 2.009000e-01   p_joint 8.070000e-02

Joint ci ratio: 6.009826e-02	ci left: 1.204549e-01	ci right 1.279514e-01	k: 3725	n:30000
Cons ci ratio: 4.507615e-02	ci left: 1.967751e-01	ci right 2.058828e-01	k: 6039	n:30000
KS ci ratio: 8.161774e-02	ci left: 6.847850e-02	ci right 7.433817e-02	k: 2141	n:30000
OR6N1   30000 perm   9 sec   (3258 perm/sec)   p_kst 7.136667e-02   p_cons 2.013000e-01   p_joint 1.241667e-01

Outputting figure to mutsig2_images.part000000000123/OR6N1.10_943_30000_0.071367_0.2013_0.12417.png
                gene_name: OR6N1
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 1 percent done.
OR5F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.897850e-02	ci left: 2.972729e-01	ci right 3.154400e-01	k: 3063	n:10000
Cons ci ratio: 8.392110e-02	ci left: 1.715307e-01	ci right 1.866567e-01	k: 1790	n:10000
KS ci ratio: 5.296607e-02	ci left: 3.444222e-01	ci right 3.632630e-01	k: 3538	n:10000
OR5F1   10000 perm   2 sec   (5885 perm/sec)   p_kst 3.538000e-01   p_cons 1.790000e-01   p_joint 3.063000e-01

Outputting figure to mutsig2_images.part000000000123/OR5F1.8_949_10000_0.3538_0.179_0.3063.png
                gene_name: OR5F1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 3 percent done.
OR5W2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.770207e-02	ci left: 5.095531e-01	ci right 5.292356e-01	k: 5194	n:10000
Cons ci ratio: 3.197654e-02	ci left: 5.907217e-01	ci right 6.100198e-01	k: 6004	n:10000
KS ci ratio: 7.693422e-02	ci left: 1.981098e-01	ci right 2.140618e-01	k: 2060	n:10000
OR5W2   10000 perm   2 sec   (5937 perm/sec)   p_kst 2.060000e-01   p_cons 6.004000e-01   p_joint 5.194000e-01

Outputting figure to mutsig2_images.part000000000123/OR5W2.7_937_10000_0.206_0.6004_0.5194.png
                gene_name: OR5W2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 4 percent done.
OR6B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.869771e-02	ci left: 3.835091e-01	ci right 4.027532e-01	k: 3931	n:10000
Cons ci ratio: 9.240747e-02	ci left: 1.454077e-01	ci right 1.595954e-01	k: 1524	n:10000
KS ci ratio: 2.306014e-02	ci left: 7.342143e-01	ci right 7.514440e-01	k: 7429	n:10000
OR6B3   10000 perm   2 sec   (5869 perm/sec)   p_kst 7.429000e-01   p_cons 1.524000e-01   p_joint 3.931000e-01

Outputting figure to mutsig2_images.part000000000123/OR6B3.6_1000_10000_0.7429_0.1524_0.3931.png
                gene_name: OR6B3
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 6 percent done.
OR6K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.108949e-02	ci left: 4.665692e-01	ci right 4.862446e-01	k: 4764	n:10000
KS ci ratio: 1.058573e-02	ci left: 9.269922e-01	ci right 9.369544e-01	k: 9321	n:10000
OR6K2   10000 perm   2 sec   (5054 perm/sec)   p_kst 9.321000e-01   p_cons 4.764000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR6K2.6_979_10000_0.9321_0.4764_1.png
                gene_name: OR6K2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
OR6K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.300512e-02	ci left: 8.948764e-01	ci right 9.066889e-01	k: 9009	n:10000
KS ci ratio: 2.310239e-02	ci left: 7.335069e-01	ci right 7.507518e-01	k: 7422	n:10000
OR6K3   10000 perm   2 sec   (5964 perm/sec)   p_kst 7.422000e-01   p_cons 9.009000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR6K3.6_950_10000_0.7422_0.9009_1.png
                gene_name: OR6K3
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
OR6T1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.422056e-02	ci left: 2.099406e-01	ci right 2.262240e-01	k: 2180	n:10000
Cons ci ratio: 1.195306e-01	ci left: 9.126730e-02	ci right 1.029686e-01	k: 970	n:10000
KS ci ratio: 5.488470e-02	ci left: 3.284292e-01	ci right 3.470654e-01	k: 3377	n:10000
OR6T1   10000 perm   2 sec   (5311 perm/sec)   p_kst 3.377000e-01   p_cons 9.700000e-02   p_joint 2.180000e-01

Joint ci ratio: 4.806086e-02	ci left: 2.435642e-01	ci right 2.556087e-01	k: 4991	n:20000
Cons ci ratio: 8.253650e-02	ci left: 9.715154e-02	ci right 1.055648e-01	k: 2026	n:20000
KS ci ratio: 3.877032e-02	ci left: 3.316422e-01	ci right 3.448048e-01	k: 6764	n:20000
OR6T1   20000 perm   4 sec   (5025 perm/sec)   p_kst 3.382000e-01   p_cons 1.013000e-01   p_joint 2.495500e-01

Outputting figure to mutsig2_images.part000000000123/OR6T1.6_976_20000_0.3382_0.1013_0.24955.png
                gene_name: OR6T1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 10 percent done.
OR7C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.579714e-01	ci left: 5.340171e-02	ci right 6.265786e-02	k: 579	n:10000
Cons ci ratio: 3.231538e-01	ci left: 1.215729e-02	ci right 1.693165e-02	k: 144	n:10000
KS ci ratio: 2.086731e-02	ci left: 7.709396e-01	ci right 7.872974e-01	k: 7792	n:10000
OR7C1   10000 perm   2 sec   (5091 perm/sec)   p_kst 7.792000e-01   p_cons 1.440000e-02   p_joint 5.790000e-02

Joint ci ratio: 9.603360e-02	ci left: 7.319530e-02	ci right 8.062826e-02	k: 1537	n:20000
Cons ci ratio: 2.146584e-01	ci left: 1.463801e-02	ci right 1.820458e-02	k: 327	n:20000
KS ci ratio: 1.513639e-02	ci left: 7.644063e-01	ci right 7.761151e-01	k: 15406	n:20000
OR7C1   20000 perm   4 sec   (4793 perm/sec)   p_kst 7.703000e-01   p_cons 1.635000e-02   p_joint 7.685000e-02

Joint ci ratio: 9.216727e-02	ci left: 5.423979e-02	ci right 5.951310e-02	k: 1705	n:30000
Cons ci ratio: 1.791977e-01	ci left: 1.429182e-02	ci right 1.713642e-02	k: 470	n:30000
KS ci ratio: 1.247865e-02	ci left: 7.620396e-01	ci right 7.716420e-01	k: 23006	n:30000
OR7C1   30000 perm   7 sec   (4500 perm/sec)   p_kst 7.668667e-01   p_cons 1.566667e-02   p_joint 5.683333e-02

Joint ci ratio: 7.698277e-02	ci left: 5.852675e-02	ci right 6.323725e-02	k: 2434	n:40000
Cons ci ratio: 1.546906e-01	ci left: 1.457665e-02	ci right 1.704437e-02	k: 631	n:40000
KS ci ratio: 1.083302e-02	ci left: 7.618193e-01	ci right 7.701420e-01	k: 30640	n:40000
OR7C1   40000 perm   10 sec   (4044 perm/sec)   p_kst 7.660000e-01   p_cons 1.577500e-02   p_joint 6.085000e-02

Joint ci ratio: 5.069749e-02	ci left: 1.040859e-01	ci right 1.095199e-01	k: 5339	n:50000
Cons ci ratio: 1.252958e-01	ci left: 1.799576e-02	ci right 2.042051e-02	k: 959	n:50000
KS ci ratio: 9.355914e-03	ci left: 7.746530e-01	ci right 7.819546e-01	k: 38916	n:50000
OR7C1   50000 perm   12 sec   (4012 perm/sec)   p_kst 7.783200e-01   p_cons 1.918000e-02   p_joint 1.067800e-01

Joint ci ratio: 4.584103e-02	ci left: 1.061376e-01	ci right 1.111337e-01	k: 6517	n:60000
Cons ci ratio: 1.144804e-01	ci left: 1.806835e-02	ci right 2.027851e-02	k: 1149	n:60000
KS ci ratio: 8.490481e-03	ci left: 7.770154e-01	ci right 7.836574e-01	k: 46821	n:60000
OR7C1   60000 perm   15 sec   (3973 perm/sec)   p_kst 7.803500e-01   p_cons 1.915000e-02   p_joint 1.086167e-01

Joint ci ratio: 4.733970e-02	ci left: 8.709841e-02	ci right 9.133572e-02	k: 6244	n:70000
Cons ci ratio: 1.056145e-01	ci left: 1.827974e-02	ci right 2.033181e-02	k: 1350	n:70000
KS ci ratio: 7.864095e-03	ci left: 7.771136e-01	ci right 7.832632e-01	k: 54614	n:70000
OR7C1   70000 perm   18 sec   (3858 perm/sec)   p_kst 7.802000e-01   p_cons 1.928571e-02   p_joint 8.920000e-02

Joint ci ratio: 4.542413e-02	ci left: 8.322476e-02	ci right 8.710539e-02	k: 6812	n:80000
Cons ci ratio: 1.077915e-01	ci left: 1.538519e-02	ci right 1.715014e-02	k: 1300	n:80000
KS ci ratio: 7.371465e-03	ci left: 7.765982e-01	ci right 7.823565e-01	k: 62359	n:80000
OR7C1   80000 perm   21 sec   (3822 perm/sec)   p_kst 7.794875e-01   p_cons 1.625000e-02   p_joint 8.515000e-02

Joint ci ratio: 5.194461e-02	ci left: 5.796318e-02	ci right 6.106529e-02	k: 5355	n:90000
Cons ci ratio: 1.014026e-01	ci left: 1.550445e-02	ci right 1.717138e-02	k: 1469	n:90000
KS ci ratio: 6.941767e-03	ci left: 7.771675e-01	ci right 7.825922e-01	k: 70190	n:90000
OR7C1   90000 perm   24 sec   (3750 perm/sec)   p_kst 7.798889e-01   p_cons 1.632222e-02   p_joint 5.950000e-02

Joint ci ratio: 4.469084e-02	ci left: 6.984122e-02	ci right 7.304370e-02	k: 7143	n:100000
Cons ci ratio: 8.866859e-02	ci left: 1.831931e-02	ci right 2.002874e-02	k: 1916	n:100000
KS ci ratio: 6.573815e-03	ci left: 7.779215e-01	ci right 7.830622e-01	k: 78050	n:100000
OR7C1   100000 perm   27 sec   (3686 perm/sec)   p_kst 7.805000e-01   p_cons 1.916000e-02   p_joint 7.143000e-02

Outputting figure to mutsig2_images.part000000000123/OR7C1.6_967_100000_0.7805_0.01916_0.07143.png
                gene_name: OR7C1
               theta_stop: 0.089 
                    nperm: 100000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.073 

Current progress: 12 percent done.
OR8B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.207044e-01	ci left: 8.961344e-02	ci right 1.012235e-01	k: 953	n:10000
Cons ci ratio: 1.451179e-01	ci left: 6.304562e-02	ci right 7.300781e-02	k: 679	n:10000
KS ci ratio: 7.459246e-02	ci left: 2.082639e-01	ci right 2.245016e-01	k: 2163	n:10000
OR8B4   10000 perm   2 sec   (5699 perm/sec)   p_kst 2.163000e-01   p_cons 6.790000e-02   p_joint 9.530000e-02

Joint ci ratio: 9.654455e-02	ci left: 7.246198e-02	ci right 7.986181e-02	k: 1522	n:20000
Cons ci ratio: 1.064458e-01	ci left: 6.011022e-02	ci right 6.691736e-02	k: 1269	n:20000
KS ci ratio: 5.287016e-02	ci left: 2.098678e-01	ci right 2.213150e-01	k: 4311	n:20000
OR8B4   20000 perm   4 sec   (5114 perm/sec)   p_kst 2.155500e-01   p_cons 6.345000e-02   p_joint 7.610000e-02

Joint ci ratio: 6.308307e-02	ci left: 1.104245e-01	ci right 1.176504e-01	k: 3420	n:30000
Cons ci ratio: 8.626237e-02	ci left: 6.161532e-02	ci right 6.720274e-02	k: 1931	n:30000
KS ci ratio: 4.341242e-02	ci left: 2.090396e-01	ci right 2.183493e-01	k: 6410	n:30000
OR8B4   30000 perm   6 sec   (4878 perm/sec)   p_kst 2.136667e-01   p_cons 6.436667e-02   p_joint 1.140000e-01

Outputting figure to mutsig2_images.part000000000123/OR8B4.6_934_30000_0.21367_0.064367_0.114.png
                gene_name: OR8B4
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 13 percent done.
OR8H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.089155e-02	ci left: 9.231709e-01	ci right 9.333780e-01	k: 9284	n:10000
Cons ci ratio: 2.974911e-02	ci left: 6.249733e-01	ci right 6.439483e-01	k: 6345	n:10000
KS ci ratio: 1.287374e-02	ci left: 8.967235e-01	ci right 9.084408e-01	k: 9027	n:10000
OR8H1   10000 perm   2 sec   (5587 perm/sec)   p_kst 9.027000e-01   p_cons 6.345000e-01   p_joint 9.284000e-01

Outputting figure to mutsig2_images.part000000000123/OR8H1.6_940_10000_0.9027_0.6345_0.9284.png
                gene_name: OR8H1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 14 percent done.
OR5D18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.249484e-01	ci left: 8.397514e-02	ci right 9.526525e-02	k: 895	n:10000
Cons ci ratio: 1.458116e-02	ci left: 8.719362e-01	ci right 8.848425e-01	k: 8785	n:10000
KS ci ratio: 2.989652e-01	ci left: 1.437251e-02	ci right 1.951444e-02	k: 168	n:10000
OR5D18   10000 perm   2 sec   (6073 perm/sec)   p_kst 1.680000e-02   p_cons 8.785000e-01   p_joint 8.950000e-02

Joint ci ratio: 7.840294e-02	ci left: 1.067273e-01	ci right 1.154861e-01	k: 2221	n:20000
Cons ci ratio: 1.061843e-02	ci left: 8.673415e-01	ci right 8.766501e-01	k: 17441	n:20000
KS ci ratio: 2.153268e-01	ci left: 1.454332e-02	ci right 1.809931e-02	k: 325	n:20000
OR5D18   20000 perm   4 sec   (5301 perm/sec)   p_kst 1.625000e-02   p_cons 8.720500e-01   p_joint 1.110500e-01

Joint ci ratio: 9.375085e-02	ci left: 5.247933e-02	ci right 5.767393e-02	k: 1651	n:30000
Cons ci ratio: 8.100089e-03	ci left: 8.828226e-01	ci right 8.900357e-01	k: 26594	n:30000
KS ci ratio: 1.772951e-01	ci left: 1.461049e-02	ci right 1.748434e-02	k: 480	n:30000
OR5D18   30000 perm   6 sec   (4981 perm/sec)   p_kst 1.600000e-02   p_cons 8.864667e-01   p_joint 5.503333e-02

Joint ci ratio: 8.877844e-02	ci left: 4.440804e-02	ci right 4.855812e-02	k: 1858	n:40000
Cons ci ratio: 7.017940e-03	ci left: 8.832244e-01	ci right 8.894694e-01	k: 35455	n:40000
KS ci ratio: 1.534616e-01	ci left: 1.481715e-02	ci right 1.730382e-02	k: 641	n:40000
OR5D18   40000 perm   8 sec   (4766 perm/sec)   p_kst 1.602500e-02   p_cons 8.863750e-01   p_joint 4.645000e-02

Joint ci ratio: 8.296498e-02	ci left: 4.096404e-02	ci right 4.452929e-02	k: 2136	n:50000
Cons ci ratio: 6.241232e-03	ci left: 8.847180e-01	ci right 8.902769e-01	k: 44376	n:50000
KS ci ratio: 1.385381e-01	ci left: 1.466719e-02	ci right 1.686955e-02	k: 787	n:50000
OR5D18   50000 perm   11 sec   (4659 perm/sec)   p_kst 1.574000e-02   p_cons 8.875200e-01   p_joint 4.272000e-02

Joint ci ratio: 7.528367e-02	ci left: 4.160340e-02	ci right 4.487430e-02	k: 2593	n:60000
Cons ci ratio: 5.915889e-03	ci left: 8.771544e-01	ci right 8.823755e-01	k: 52787	n:60000
KS ci ratio: 1.273323e-01	ci left: 1.455901e-02	ci right 1.655492e-02	k: 932	n:60000
OR5D18   60000 perm   13 sec   (4606 perm/sec)   p_kst 1.553333e-02   p_cons 8.797833e-01   p_joint 4.321667e-02

Joint ci ratio: 7.573885e-02	ci left: 3.545946e-02	ci right 3.826482e-02	k: 2579	n:70000
Cons ci ratio: 5.484725e-03	ci left: 8.770511e-01	ci right 8.818888e-01	k: 61564	n:70000
KS ci ratio: 1.174221e-01	ci left: 1.475046e-02	ci right 1.660429e-02	k: 1096	n:70000
OR5D18   70000 perm   15 sec   (4550 perm/sec)   p_kst 1.565714e-02   p_cons 8.794857e-01   p_joint 3.684286e-02

Joint ci ratio: 7.355201e-02	ci left: 3.302494e-02	ci right 3.555898e-02	k: 2742	n:80000
Cons ci ratio: 5.123468e-03	ci left: 8.775013e-01	ci right 8.820211e-01	k: 70382	n:80000
KS ci ratio: 1.132702e-01	ci left: 1.391387e-02	ci right 1.559659e-02	k: 1179	n:80000
OR5D18   80000 perm   18 sec   (4490 perm/sec)   p_kst 1.473750e-02   p_cons 8.797750e-01   p_joint 3.427500e-02

Joint ci ratio: 6.274382e-02	ci left: 4.026095e-02	ci right 4.287981e-02	k: 3740	n:90000
Cons ci ratio: 4.826314e-03	ci left: 8.778144e-01	ci right 8.820722e-01	k: 79196	n:90000
KS ci ratio: 1.064469e-01	ci left: 1.405367e-02	ci right 1.564449e-02	k: 1335	n:90000
OR5D18   90000 perm   20 sec   (4427 perm/sec)   p_kst 1.483333e-02   p_cons 8.799556e-01   p_joint 4.155556e-02

Joint ci ratio: 6.095865e-02	ci left: 3.849820e-02	ci right 4.092860e-02	k: 3970	n:100000
Cons ci ratio: 4.580920e-03	ci left: 8.778188e-01	ci right 8.818591e-01	k: 87985	n:100000
KS ci ratio: 1.016624e-01	ci left: 1.390469e-02	ci right 1.540366e-02	k: 1464	n:100000
OR5D18   100000 perm   23 sec   (4318 perm/sec)   p_kst 1.464000e-02   p_cons 8.798500e-01   p_joint 3.970000e-02

Joint ci ratio: 4.756483e-02	ci left: 5.676964e-02	ci right 5.954462e-02	k: 6396	n:110000
Cons ci ratio: 4.362750e-03	ci left: 8.781566e-01	ci right 8.820052e-01	k: 96810	n:110000
KS ci ratio: 9.374962e-02	ci left: 1.491145e-02	ci right 1.638697e-02	k: 1720	n:110000
OR5D18   110000 perm   26 sec   (4260 perm/sec)   p_kst 1.563636e-02   p_cons 8.800909e-01   p_joint 5.814545e-02

Outputting figure to mutsig2_images.part000000000123/OR5D18.5_946_110000_0.015636_0.88009_0.058145.png
                gene_name: OR5D18
               theta_stop: 0.094 
                    nperm: 110000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.060 

Current progress: 16 percent done.
OR5H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.029893e-02	ci left: 9.305074e-01	ci right 9.402371e-01	k: 9355	n:10000
KS ci ratio: 1.168940e-02	ci left: 9.128618e-01	ci right 9.236931e-01	k: 9184	n:10000
OR5H2   10000 perm   2 sec   (5778 perm/sec)   p_kst 9.184000e-01   p_cons 9.355000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR5H2.5_949_10000_0.9184_0.9355_1.png
                gene_name: OR5H2
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
OR5K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.570431e-02	ci left: 3.218765e-01	ci right 3.404219e-01	k: 3311	n:10000
Cons ci ratio: 2.597292e-02	ci left: 6.857695e-01	ci right 7.039168e-01	k: 6949	n:10000
KS ci ratio: 8.327051e-02	ci left: 1.737925e-01	ci right 1.889935e-01	k: 1813	n:10000
OR5K3   10000 perm   2 sec   (5980 perm/sec)   p_kst 1.813000e-01   p_cons 6.949000e-01   p_joint 3.311000e-01

Outputting figure to mutsig2_images.part000000000123/OR5K3.5_970_10000_0.1813_0.6949_0.3311.png
                gene_name: OR5K3
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 19 percent done.
OR5M3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.508864e-02	ci left: 8.642720e-01	ci right 8.775111e-01	k: 8710	n:10000
Cons ci ratio: 1.240721e-02	ci left: 9.031932e-01	ci right 9.145673e-01	k: 9090	n:10000
KS ci ratio: 2.210680e-02	ci left: 7.501892e-01	ci right 7.670598e-01	k: 7587	n:10000
OR5M3   10000 perm   2 sec   (5813 perm/sec)   p_kst 7.587000e-01   p_cons 9.090000e-01   p_joint 8.710000e-01

Outputting figure to mutsig2_images.part000000000123/OR5M3.5_928_10000_0.7587_0.909_0.871.png
                gene_name: OR5M3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 20 percent done.
OR6N2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.188009e-02	ci left: 4.570825e-01	ci right 4.767368e-01	k: 4669	n:10000
Cons ci ratio: 1.499456e-02	ci left: 8.657021e-01	ci right 8.788802e-01	k: 8724	n:10000
KS ci ratio: 7.430771e-02	ci left: 2.095461e-01	ci right 2.258187e-01	k: 2176	n:10000
OR6N2   10000 perm   2 sec   (5326 perm/sec)   p_kst 2.176000e-01   p_cons 8.724000e-01   p_joint 4.669000e-01

Outputting figure to mutsig2_images.part000000000123/OR6N2.5_958_10000_0.2176_0.8724_0.4669.png
                gene_name: OR6N2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 22 percent done.
OR5B21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
Cons ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
KS ci ratio: 2.939100e-02	ci left: 6.306030e-01	ci right 6.495153e-01	k: 6401	n:10000
OR5B21   10000 perm   2 sec   (5729 perm/sec)   p_kst 6.401000e-01   p_cons 9.400000e-03   p_joint 3.010000e-02

Joint ci ratio: 1.763823e-01	ci left: 2.197114e-02	ci right 2.626874e-02	k: 481	n:20000
Cons ci ratio: 3.156909e-01	ci left: 6.443412e-03	ci right 8.902974e-03	k: 152	n:20000
KS ci ratio: 2.166477e-02	ci left: 6.139834e-01	ci right 6.274815e-01	k: 12415	n:20000
OR5B21   20000 perm   4 sec   (5215 perm/sec)   p_kst 6.207500e-01   p_cons 7.600000e-03   p_joint 2.405000e-02

Joint ci ratio: 1.144466e-01	ci left: 3.547563e-02	ci right 3.981450e-02	k: 1128	n:30000
Cons ci ratio: 2.689088e-01	ci left: 6.087891e-03	ci right 8.009438e-03	k: 210	n:30000
KS ci ratio: 1.773398e-02	ci left: 6.140449e-01	ci right 6.250653e-01	k: 18587	n:30000
OR5B21   30000 perm   6 sec   (5018 perm/sec)   p_kst 6.195667e-01   p_cons 7.000000e-03   p_joint 3.760000e-02

Joint ci ratio: 1.151100e-01	ci left: 2.655092e-02	ci right 2.981806e-02	k: 1126	n:40000
Cons ci ratio: 2.326054e-01	ci left: 6.229965e-03	ci right 7.892807e-03	k: 281	n:40000
KS ci ratio: 1.538809e-02	ci left: 6.138691e-01	ci right 6.234137e-01	k: 24746	n:40000
OR5B21   40000 perm   8 sec   (4875 perm/sec)   p_kst 6.186500e-01   p_cons 7.025000e-03   p_joint 2.815000e-02

Joint ci ratio: 1.123220e-01	ci left: 2.244275e-02	ci right 2.513293e-02	k: 1188	n:50000
Cons ci ratio: 2.013950e-01	ci left: 6.762465e-03	ci right 8.295544e-03	k: 375	n:50000
KS ci ratio: 1.399241e-02	ci left: 6.065501e-01	ci right 6.151170e-01	k: 30542	n:50000
OR5B21   50000 perm   10 sec   (4771 perm/sec)   p_kst 6.108400e-01   p_cons 7.500000e-03   p_joint 2.376000e-02

Joint ci ratio: 1.217519e-01	ci left: 1.594838e-02	ci right 1.803205e-02	k: 1018	n:60000
Cons ci ratio: 1.840948e-01	ci left: 6.809320e-03	ci right 8.205619e-03	k: 449	n:60000
KS ci ratio: 1.278199e-02	ci left: 6.066013e-01	ci right 6.144214e-01	k: 36631	n:60000
OR5B21   60000 perm   13 sec   (4668 perm/sec)   p_kst 6.105167e-01   p_cons 7.483333e-03   p_joint 1.696667e-02

Joint ci ratio: 9.454061e-02	ci left: 2.283697e-02	ci right 2.511701e-02	k: 1677	n:70000
Cons ci ratio: 1.710968e-01	ci left: 6.805803e-03	ci right 8.092675e-03	k: 520	n:70000
KS ci ratio: 1.182041e-02	ci left: 6.074340e-01	ci right 6.146711e-01	k: 42774	n:70000
OR5B21   70000 perm   15 sec   (4579 perm/sec)   p_kst 6.110571e-01   p_cons 7.428571e-03   p_joint 2.395714e-02

Joint ci ratio: 8.245558e-02	ci left: 2.634094e-02	ci right 2.861850e-02	k: 2197	n:80000
Cons ci ratio: 1.674952e-01	ci left: 6.230238e-03	ci right 7.380966e-03	k: 543	n:80000
KS ci ratio: 1.106240e-02	ci left: 6.074362e-01	ci right 6.142058e-01	k: 48866	n:80000
OR5B21   80000 perm   18 sec   (4489 perm/sec)   p_kst 6.108250e-01   p_cons 6.787500e-03   p_joint 2.746250e-02

Joint ci ratio: 7.681456e-02	ci left: 2.704091e-02	ci right 2.921187e-02	k: 2530	n:90000
Cons ci ratio: 1.573990e-01	ci left: 6.305509e-03	ci right 7.393309e-03	k: 615	n:90000
KS ci ratio: 1.041860e-02	ci left: 6.081396e-01	ci right 6.145199e-01	k: 55020	n:90000
OR5B21   90000 perm   20 sec   (4405 perm/sec)   p_kst 6.113333e-01   p_cons 6.833333e-03   p_joint 2.811111e-02

Joint ci ratio: 7.858185e-02	ci left: 2.332504e-02	ci right 2.524269e-02	k: 2427	n:100000
Cons ci ratio: 1.487154e-01	ci left: 6.386652e-03	ci right 7.422259e-03	k: 689	n:100000
KS ci ratio: 9.869689e-03	ci left: 6.089916e-01	ci right 6.150419e-01	k: 61202	n:100000
OR5B21   100000 perm   23 sec   (4313 perm/sec)   p_kst 6.120200e-01   p_cons 6.890000e-03   p_joint 2.427000e-02

Joint ci ratio: 7.756716e-02	ci left: 2.181002e-02	ci right 2.357890e-02	k: 2495	n:110000
Cons ci ratio: 1.423623e-01	ci left: 6.357917e-03	ci right 7.341082e-03	k: 752	n:110000
KS ci ratio: 9.422678e-03	ci left: 6.085121e-01	ci right 6.142821e-01	k: 67254	n:110000
OR5B21   110000 perm   26 sec   (4196 perm/sec)   p_kst 6.114000e-01   p_cons 6.836364e-03   p_joint 2.268182e-02

Joint ci ratio: 7.334558e-02	ci left: 2.239655e-02	ci right 2.410993e-02	k: 2789	n:120000
Cons ci ratio: 1.357581e-01	ci left: 6.431370e-03	ci right 7.376029e-03	k: 827	n:120000
KS ci ratio: 9.015998e-03	ci left: 6.089273e-01	ci right 6.144506e-01	k: 73403	n:120000
OR5B21   120000 perm   29 sec   (4090 perm/sec)   p_kst 6.116917e-01   p_cons 6.891667e-03   p_joint 2.324167e-02

Joint ci ratio: 7.139875e-02	ci left: 2.185180e-02	ci right 2.347728e-02	k: 2945	n:130000
Cons ci ratio: 1.253927e-01	ci left: 6.993448e-03	ci right 7.936414e-03	k: 969	n:130000
KS ci ratio: 8.678563e-03	ci left: 6.081433e-01	ci right 6.134518e-01	k: 79404	n:130000
OR5B21   130000 perm   32 sec   (4012 perm/sec)   p_kst 6.108000e-01   p_cons 7.453846e-03   p_joint 2.265385e-02

Joint ci ratio: 7.107680e-02	ci left: 2.050794e-02	ci right 2.202627e-02	k: 2976	n:140000
Cons ci ratio: 1.215733e-01	ci left: 6.923079e-03	ci right 7.826076e-03	k: 1031	n:140000
KS ci ratio: 8.367276e-03	ci left: 6.079899e-01	ci right 6.131056e-01	k: 85477	n:140000
OR5B21   140000 perm   35 sec   (3951 perm/sec)   p_kst 6.105500e-01   p_cons 7.364286e-03   p_joint 2.125714e-02

Joint ci ratio: 6.278843e-02	ci left: 2.453085e-02	ci right 2.612756e-02	k: 3798	n:150000
Cons ci ratio: 1.172223e-01	ci left: 6.966021e-03	ci right 7.839849e-03	k: 1109	n:150000
KS ci ratio: 8.080784e-03	ci left: 6.082404e-01	ci right 6.131820e-01	k: 91607	n:150000
OR5B21   150000 perm   39 sec   (3877 perm/sec)   p_kst 6.107133e-01   p_cons 7.393333e-03   p_joint 2.532000e-02

Joint ci ratio: 6.234527e-02	ci left: 2.336021e-02	ci right 2.486960e-02	k: 3857	n:160000
Cons ci ratio: 1.130679e-01	ci left: 7.034470e-03	ci right 7.883524e-03	k: 1192	n:160000
KS ci ratio: 7.822249e-03	ci left: 6.084371e-01	ci right 6.132214e-01	k: 97733	n:160000
OR5B21   160000 perm   42 sec   (3823 perm/sec)   p_kst 6.108313e-01   p_cons 7.450000e-03   p_joint 2.410625e-02

Joint ci ratio: 5.414334e-02	ci left: 2.910129e-02	ci right 3.072655e-02	k: 5084	n:170000
Cons ci ratio: 1.053245e-01	ci left: 7.656461e-03	ci right 8.513384e-03	k: 1373	n:170000
KS ci ratio: 7.594833e-03	ci left: 6.081242e-01	ci right 6.127662e-01	k: 103776	n:170000
OR5B21   170000 perm   45 sec   (3767 perm/sec)   p_kst 6.104471e-01   p_cons 8.076471e-03   p_joint 2.990588e-02

Joint ci ratio: 5.228406e-02	ci left: 2.949099e-02	ci right 3.107974e-02	k: 5450	n:180000
Cons ci ratio: 1.017532e-01	ci left: 7.761470e-03	ci right 8.598931e-03	k: 1471	n:180000
KS ci ratio: 7.376928e-03	ci left: 6.084429e-01	ci right 6.129535e-01	k: 109926	n:180000
OR5B21   180000 perm   48 sec   (3715 perm/sec)   p_kst 6.107000e-01   p_cons 8.172222e-03   p_joint 3.027778e-02

Joint ci ratio: 5.089793e-02	ci left: 2.950261e-02	ci right 3.104861e-02	k: 5751	n:190000
Cons ci ratio: 9.903212e-02	ci left: 7.773717e-03	ci right 8.588764e-03	k: 1553	n:190000
KS ci ratio: 7.182005e-03	ci left: 6.083821e-01	ci right 6.127724e-01	k: 116010	n:190000
OR5B21   190000 perm   52 sec   (3664 perm/sec)   p_kst 6.105789e-01   p_cons 8.173684e-03   p_joint 3.026842e-02

Outputting figure to mutsig2_images.part000000000123/OR5B21.4_934_190000_0.61058_0.0081737_0.030268.png
                gene_name: OR5B21
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.0082 
      ci_cons_bounds_left: 0.0078 
     ci_cons_bounds_right: 0.0086 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.031 

Current progress: 23 percent done.
OR5M9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.608017e-02	ci left: 8.489651e-01	ci right 8.628268e-01	k: 8560	n:10000
KS ci ratio: 4.037047e-03	ci left: 9.874126e-01	ci right 9.914948e-01	k: 9896	n:10000
OR5M9   10000 perm   2 sec   (6267 perm/sec)   p_kst 9.896000e-01   p_cons 8.560000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR5M9.4_937_10000_0.9896_0.856_1.png
                gene_name: OR5M9
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
OR5T2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.986261e-03	ci left: 9.657293e-01	ci right 9.725938e-01	k: 9693	n:10000
KS ci ratio: 1.198297e-02	ci left: 9.089508e-01	ci right 9.200063e-01	k: 9146	n:10000
OR5T2   10000 perm   2 sec   (5857 perm/sec)   p_kst 9.146000e-01   p_cons 9.693000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR5T2.4_1084_10000_0.9146_0.9693_1.png
                gene_name: OR5T2
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
OR6C6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.455362e-02	ci left: 7.092699e-01	ci right 7.270028e-01	k: 7182	n:10000
KS ci ratio: 4.319059e-03	ci left: 9.857766e-01	ci right 9.901322e-01	k: 9881	n:10000
OR6C6   10000 perm   2 sec   (5760 perm/sec)   p_kst 9.881000e-01   p_cons 7.182000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR6C6.4_949_10000_0.9881_0.7182_1.png
                gene_name: OR6C6
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
OR6C75
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.413562e-02	ci left: 7.162348e-01	ci right 7.338340e-01	k: 7251	n:10000
Cons ci ratio: 2.642083e-02	ci left: 6.784124e-01	ci right 6.966782e-01	k: 6876	n:10000
KS ci ratio: 3.622611e-02	ci left: 5.294702e-01	ci right 5.491069e-01	k: 5393	n:10000
OR6C75   10000 perm   2 sec   (5918 perm/sec)   p_kst 5.393000e-01   p_cons 6.876000e-01   p_joint 7.251000e-01

Outputting figure to mutsig2_images.part000000000123/OR6C75.4_943_10000_0.5393_0.6876_0.7251.png
                gene_name: OR6C75
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 29 percent done.
OR6K6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.620585e-02	ci left: 6.819395e-01	ci right 7.001491e-01	k: 6911	n:10000
Cons ci ratio: 2.485100e-02	ci left: 7.043254e-01	ci right 7.221502e-01	k: 7133	n:10000
KS ci ratio: 4.262781e-02	ci left: 4.482980e-01	ci right 4.679264e-01	k: 4581	n:10000
OR6K6   10000 perm   2 sec   (6290 perm/sec)   p_kst 4.581000e-01   p_cons 7.133000e-01   p_joint 6.911000e-01

Outputting figure to mutsig2_images.part000000000123/OR6K6.4_1036_10000_0.4581_0.7133_0.6911.png
                gene_name: OR6K6
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 30 percent done.
OR6M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.263474e-01	ci left: 8.222674e-02	ci right 9.341473e-02	k: 877	n:10000
Cons ci ratio: 1.721333e-01	ci left: 4.504270e-02	ci right 5.362227e-02	k: 492	n:10000
KS ci ratio: 8.618673e-02	ci left: 1.639619e-01	ci right 1.788300e-01	k: 1713	n:10000
OR6M1   10000 perm   2 sec   (6281 perm/sec)   p_kst 1.713000e-01   p_cons 4.920000e-02   p_joint 8.770000e-02

Joint ci ratio: 8.819157e-02	ci left: 8.592160e-02	ci right 9.389809e-02	k: 1797	n:20000
Cons ci ratio: 1.126358e-01	ci left: 5.387513e-02	ci right 6.035438e-02	k: 1141	n:20000
KS ci ratio: 6.136585e-02	ci left: 1.642247e-01	ci right 1.746715e-01	k: 3388	n:20000
OR6M1   20000 perm   4 sec   (5493 perm/sec)   p_kst 1.694000e-01   p_cons 5.705000e-02   p_joint 8.985000e-02

Joint ci ratio: 1.047476e-01	ci left: 4.225917e-02	ci right 4.696287e-02	k: 1337	n:30000
Cons ci ratio: 9.041039e-02	ci left: 5.629459e-02	ci right 6.165788e-02	k: 1768	n:30000
KS ci ratio: 4.998396e-02	ci left: 1.658638e-01	ci right 1.744002e-01	k: 5103	n:30000
OR6M1   30000 perm   6 sec   (5046 perm/sec)   p_kst 1.701000e-01   p_cons 5.893333e-02   p_joint 4.456667e-02

Joint ci ratio: 7.356751e-02	ci left: 6.383165e-02	ci right 6.873154e-02	k: 2650	n:40000
Cons ci ratio: 7.889809e-02	ci left: 5.582715e-02	ci right 6.043726e-02	k: 2324	n:40000
KS ci ratio: 4.327727e-02	ci left: 1.665039e-01	ci right 1.738940e-01	k: 6807	n:40000
OR6M1   40000 perm   8 sec   (4884 perm/sec)   p_kst 1.701750e-01   p_cons 5.810000e-02   p_joint 6.625000e-02

Outputting figure to mutsig2_images.part000000000123/OR6M1.4_946_40000_0.17017_0.0581_0.06625.png
                gene_name: OR6M1
               theta_stop: 0.079 
                    nperm: 40000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.069 

Current progress: 32 percent done.
OR6Y1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.905383e-02	ci left: 6.359324e-01	ci right 6.547828e-01	k: 6454	n:10000
Cons ci ratio: 2.252316e-02	ci left: 7.432110e-01	ci right 7.602421e-01	k: 7518	n:10000
KS ci ratio: 4.854499e-02	ci left: 3.850022e-01	ci right 4.042592e-01	k: 3946	n:10000
OR6Y1   10000 perm   2 sec   (5943 perm/sec)   p_kst 3.946000e-01   p_cons 7.518000e-01   p_joint 6.454000e-01

Outputting figure to mutsig2_images.part000000000123/OR6Y1.4_982_10000_0.3946_0.7518_0.6454.png
                gene_name: OR6Y1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 33 percent done.
OR7G1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.843343e-02	ci left: 3.860973e-01	ci right 4.053635e-01	k: 3957	n:10000
Cons ci ratio: 6.372771e-02	ci left: 2.656711e-01	ci right 2.832604e-01	k: 2744	n:10000
KS ci ratio: 4.814106e-02	ci left: 3.889845e-01	ci right 4.082746e-01	k: 3986	n:10000
OR7G1   10000 perm   2 sec   (5413 perm/sec)   p_kst 3.986000e-01   p_cons 2.744000e-01   p_joint 3.957000e-01

Outputting figure to mutsig2_images.part000000000123/OR7G1.4_1010_10000_0.3986_0.2744_0.3957.png
                gene_name: OR7G1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 35 percent done.
OR5B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.981480e-02	ci left: 7.884733e-01	ci right 8.043536e-01	k: 7965	n:10000
Cons ci ratio: 1.996744e-02	ci left: 7.859382e-01	ci right 8.018902e-01	k: 7940	n:10000
KS ci ratio: 4.019438e-02	ci left: 4.775582e-01	ci right 4.972492e-01	k: 4874	n:10000
OR5B3   10000 perm   2 sec   (6143 perm/sec)   p_kst 4.874000e-01   p_cons 7.940000e-01   p_joint 7.965000e-01

Outputting figure to mutsig2_images.part000000000123/OR5B3.3_949_10000_0.4874_0.794_0.7965.png
                gene_name: OR5B3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 36 percent done.
OR5C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.444083e-02	ci left: 4.277464e-01	ci right 4.472900e-01	k: 4375	n:10000
Cons ci ratio: 3.853352e-02	ci left: 4.986503e-01	ci right 5.183447e-01	k: 5085	n:10000
KS ci ratio: 6.006440e-02	ci left: 2.896400e-01	ci right 3.076774e-01	k: 2986	n:10000
OR5C1   10000 perm   1 sec   (6803 perm/sec)   p_kst 2.986000e-01   p_cons 5.085000e-01   p_joint 4.375000e-01

Outputting figure to mutsig2_images.part000000000123/OR5C1.3_967_10000_0.2986_0.5085_0.4375.png
                gene_name: OR5C1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 38 percent done.
OR5D13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.449299e-02	ci left: 7.102792e-01	ci right 7.279930e-01	k: 7192	n:10000
Cons ci ratio: 6.732082e-02	ci left: 2.446012e-01	ci right 2.617428e-01	k: 2531	n:10000
KS ci ratio: 2.070962e-02	ci left: 7.735734e-01	ci right 7.898622e-01	k: 7818	n:10000
OR5D13   10000 perm   2 sec   (6144 perm/sec)   p_kst 7.818000e-01   p_cons 2.531000e-01   p_joint 7.192000e-01

Outputting figure to mutsig2_images.part000000000123/OR5D13.3_949_10000_0.7818_0.2531_0.7192.png
                gene_name: OR5D13
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 39 percent done.
OR5D14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.797082e-02	ci left: 3.906772e-01	ci right 4.099809e-01	k: 4003	n:10000
Cons ci ratio: 4.519813e-02	ci left: 4.194707e-01	ci right 4.389705e-01	k: 4292	n:10000
KS ci ratio: 6.158970e-02	ci left: 2.793356e-01	ci right 2.971879e-01	k: 2882	n:10000
OR5D14   10000 perm   2 sec   (6639 perm/sec)   p_kst 2.882000e-01   p_cons 4.292000e-01   p_joint 4.003000e-01

Outputting figure to mutsig2_images.part000000000123/OR5D14.3_949_10000_0.2882_0.4292_0.4003.png
                gene_name: OR5D14
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 41 percent done.
OR5H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.131657e-02	ci left: 3.589352e-01	ci right 3.779415e-01	k: 3684	n:10000
Cons ci ratio: 2.411746e-02	ci left: 7.165376e-01	ci right 7.341309e-01	k: 7254	n:10000
KS ci ratio: 6.526634e-02	ci left: 2.563695e-01	ci right 2.737676e-01	k: 2650	n:10000
OR5H1   10000 perm   2 sec   (6137 perm/sec)   p_kst 2.650000e-01   p_cons 7.254000e-01   p_joint 3.684000e-01

Outputting figure to mutsig2_images.part000000000123/OR5H1.3_946_10000_0.265_0.7254_0.3684.png
                gene_name: OR5H1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 42 percent done.
OR5H14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.517473e-02	ci left: 5.440928e-01	ci right 5.636758e-01	k: 5539	n:10000
KS ci ratio: 8.933874e-03	ci left: 9.462737e-01	ci right 9.548614e-01	k: 9507	n:10000
OR5H14   10000 perm   2 sec   (5506 perm/sec)   p_kst 9.507000e-01   p_cons 5.539000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR5H14.3_937_10000_0.9507_0.5539_1.png
                gene_name: OR5H14
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
OR5H6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.487955e-02	ci left: 2.069819e-01	ci right 2.231844e-01	k: 2150	n:10000
Cons ci ratio: 4.777161e-02	ci left: 3.926687e-01	ci right 4.119882e-01	k: 4023	n:10000
KS ci ratio: 1.051569e-01	ci left: 1.155484e-01	ci right 1.284727e-01	k: 1219	n:10000
OR5H6   10000 perm   2 sec   (6192 perm/sec)   p_kst 1.219000e-01   p_cons 4.023000e-01   p_joint 2.150000e-01

Joint ci ratio: 4.889630e-02	ci left: 2.372173e-01	ci right 2.491574e-01	k: 4863	n:20000
Cons ci ratio: 3.325136e-02	ci left: 4.031223e-01	ci right 4.168039e-01	k: 8199	n:20000
KS ci ratio: 7.448022e-02	ci left: 1.171008e-01	ci right 1.262095e-01	k: 2432	n:20000
OR5H6   20000 perm   4 sec   (5474 perm/sec)   p_kst 1.216000e-01   p_cons 4.099500e-01   p_joint 2.431500e-01

Outputting figure to mutsig2_images.part000000000123/OR5H6.3_982_20000_0.1216_0.40995_0.24315.png
                gene_name: OR5H6
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 45 percent done.
OR5I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.824936e-02	ci left: 5.023507e-01	ci right 5.220421e-01	k: 5122	n:10000
Cons ci ratio: 3.242749e-03	ci left: 9.914989e-01	ci right 9.948039e-01	k: 9933	n:10000
KS ci ratio: 5.337388e-02	ci left: 3.409444e-01	ci right 3.597428e-01	k: 3503	n:10000
OR5I1   10000 perm   2 sec   (5971 perm/sec)   p_kst 3.503000e-01   p_cons 9.933000e-01   p_joint 5.122000e-01

Outputting figure to mutsig2_images.part000000000123/OR5I1.3_949_10000_0.3503_0.9933_0.5122.png
                gene_name: OR5I1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 46 percent done.
OR5K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.533675e-02	ci left: 4.179754e-01	ci right 4.374667e-01	k: 4277	n:10000
Cons ci ratio: 4.939873e-02	ci left: 3.767412e-01	ci right 3.959251e-01	k: 3863	n:10000
KS ci ratio: 5.608365e-02	ci left: 3.188987e-01	ci right 3.374015e-01	k: 3281	n:10000
OR5K1   10000 perm   2 sec   (6447 perm/sec)   p_kst 3.281000e-01   p_cons 3.863000e-01   p_joint 4.277000e-01

Outputting figure to mutsig2_images.part000000000123/OR5K1.3_931_10000_0.3281_0.3863_0.4277.png
                gene_name: OR5K1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 48 percent done.
OR5L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.390326e-02	ci left: 4.337306e-01	ci right 4.533023e-01	k: 4435	n:10000
Cons ci ratio: 9.291121e-02	ci left: 1.440348e-01	ci right 1.581691e-01	k: 1510	n:10000
KS ci ratio: 2.248092e-02	ci left: 7.439188e-01	ci right 7.609339e-01	k: 7525	n:10000
OR5L1   10000 perm   2 sec   (6340 perm/sec)   p_kst 7.525000e-01   p_cons 1.510000e-01   p_joint 4.435000e-01

Outputting figure to mutsig2_images.part000000000123/OR5L1.3_940_10000_0.7525_0.151_0.4435.png
                gene_name: OR5L1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 49 percent done.
OR5M8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.331365e-02	ci left: 7.299703e-01	ci right 7.472905e-01	k: 7387	n:10000
Cons ci ratio: 4.907736e-02	ci left: 3.798263e-01	ci right 3.990382e-01	k: 3894	n:10000
KS ci ratio: 2.946757e-02	ci left: 6.293965e-01	ci right 6.483225e-01	k: 6389	n:10000
OR5M8   10000 perm   2 sec   (6435 perm/sec)   p_kst 6.389000e-01   p_cons 3.894000e-01   p_joint 7.387000e-01

Outputting figure to mutsig2_images.part000000000123/OR5M8.3_940_10000_0.6389_0.3894_0.7387.png
                gene_name: OR5M8
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 51 percent done.
OR5P2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.746502e-02	ci left: 8.269673e-01	ci right 8.416374e-01	k: 8344	n:10000
Cons ci ratio: 3.293807e-02	ci left: 5.763726e-01	ci right 5.957772e-01	k: 5861	n:10000
KS ci ratio: 8.634954e-03	ci left: 9.495015e-01	ci right 9.578316e-01	k: 9538	n:10000
OR5P2   10000 perm   2 sec   (6241 perm/sec)   p_kst 9.538000e-01   p_cons 5.861000e-01   p_joint 8.344000e-01

Outputting figure to mutsig2_images.part000000000123/OR5P2.3_973_10000_0.9538_0.5861_0.8344.png
                gene_name: OR5P2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 52 percent done.
OR5R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.324394e-02	ci left: 8.914916e-01	ci right 9.034757e-01	k: 8976	n:10000
KS ci ratio: 4.001785e-02	ci left: 4.797565e-01	ci right 4.994495e-01	k: 4896	n:10000
OR5R1   10000 perm   2 sec   (5658 perm/sec)   p_kst 4.896000e-01   p_cons 8.976000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR5R1.3_979_10000_0.4896_0.8976_1.png
                gene_name: OR5R1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
OR5T3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.738372e-02	ci left: 1.962376e-01	ci right 2.121351e-01	k: 2041	n:10000
Cons ci ratio: 4.011404e-02	ci left: 4.785574e-01	ci right 4.982494e-01	k: 4884	n:10000
KS ci ratio: 1.696151e-01	ci left: 4.638557e-02	ci right 5.507852e-02	k: 506	n:10000
OR5T3   10000 perm   1 sec   (6697 perm/sec)   p_kst 5.060000e-02   p_cons 4.884000e-01   p_joint 2.041000e-01

Joint ci ratio: 4.800320e-02	ci left: 2.440105e-01	ci right 2.560622e-01	k: 5000	n:20000
Cons ci ratio: 2.665328e-02	ci left: 5.125984e-01	ci right 5.264960e-01	k: 10391	n:20000
KS ci ratio: 1.140188e-01	ci left: 5.260997e-02	ci right 5.901994e-02	k: 1115	n:20000
OR5T3   20000 perm   3 sec   (5774 perm/sec)   p_kst 5.575000e-02   p_cons 5.195500e-01   p_joint 2.500000e-01

Joint ci ratio: 4.949972e-02	ci left: 1.686029e-01	ci right 1.771938e-01	k: 5186	n:30000
Cons ci ratio: 2.241628e-02	ci left: 4.990921e-01	ci right 5.104403e-01	k: 15143	n:30000
KS ci ratio: 9.447933e-02	ci left: 5.169714e-02	ci right 5.685627e-02	k: 1627	n:30000
OR5T3   30000 perm   5 sec   (5495 perm/sec)   p_kst 5.423333e-02   p_cons 5.047667e-01   p_joint 1.728667e-01

Outputting figure to mutsig2_images.part000000000123/OR5T3.3_1027_30000_0.054233_0.50477_0.17287.png
                gene_name: OR5T3
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 55 percent done.
OR5V1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.286976e-03	ci left: 9.531520e-01	ci right 9.611789e-01	k: 9573	n:10000
KS ci ratio: 2.837173e-02	ci left: 6.467962e-01	ci right 6.655127e-01	k: 6562	n:10000
OR5V1   10000 perm   2 sec   (5994 perm/sec)   p_kst 6.562000e-01   p_cons 9.573000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR5V1.3_970_10000_0.6562_0.9573_1.png
                gene_name: OR5V1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
OR6B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.912852e-01	ci left: 3.643453e-02	ci right 4.423614e-02	k: 402	n:10000
Cons ci ratio: 4.258860e-01	ci left: 6.616170e-03	ci right 1.027885e-02	k: 83	n:10000
KS ci ratio: 3.528874e-02	ci left: 5.424899e-01	ci right 5.620796e-01	k: 5523	n:10000
OR6B2   10000 perm   2 sec   (6439 perm/sec)   p_kst 5.523000e-01   p_cons 8.300000e-03   p_joint 4.020000e-02

Joint ci ratio: 1.417063e-01	ci left: 3.423328e-02	ci right 3.950247e-02	k: 736	n:20000
Cons ci ratio: 3.210197e-01	ci left: 6.213270e-03	ci right 8.633254e-03	k: 147	n:20000
KS ci ratio: 2.466571e-02	ci left: 5.511343e-01	ci right 5.649488e-01	k: 11161	n:20000
OR6B2   20000 perm   4 sec   (5515 perm/sec)   p_kst 5.580500e-01   p_cons 7.350000e-03   p_joint 3.680000e-02

Joint ci ratio: 1.188361e-01	ci left: 3.291646e-02	ci right 3.710754e-02	k: 1049	n:30000
Cons ci ratio: 2.735157e-01	ci left: 5.870334e-03	ci right 7.760411e-03	k: 203	n:30000
KS ci ratio: 2.001702e-02	ci left: 5.554287e-01	ci right 5.666928e-01	k: 16832	n:30000
OR6B2   30000 perm   6 sec   (5157 perm/sec)   p_kst 5.610667e-01   p_cons 6.766667e-03   p_joint 3.496667e-02

Joint ci ratio: 1.112580e-01	ci left: 2.842294e-02	ci right 3.179574e-02	k: 1203	n:40000
Cons ci ratio: 2.281657e-01	ci left: 6.489190e-03	ci right 8.183514e-03	k: 292	n:40000
KS ci ratio: 1.724907e-02	ci left: 5.586478e-01	ci right 5.683929e-01	k: 22541	n:40000
OR6B2   40000 perm   8 sec   (4954 perm/sec)   p_kst 5.635250e-01   p_cons 7.300000e-03   p_joint 3.007500e-02

Joint ci ratio: 1.159179e-01	ci left: 2.106240e-02	ci right 2.367346e-02	k: 1117	n:50000
Cons ci ratio: 2.022094e-01	ci left: 6.705477e-03	ci right 8.232543e-03	k: 372	n:50000
KS ci ratio: 1.546721e-02	ci left: 5.579180e-01	ci right 5.666348e-01	k: 28114	n:50000
OR6B2   50000 perm   10 sec   (4854 perm/sec)   p_kst 5.622800e-01   p_cons 7.440000e-03   p_joint 2.234000e-02

Joint ci ratio: 1.054810e-01	ci left: 2.131192e-02	ci right 2.370124e-02	k: 1349	n:60000
Cons ci ratio: 1.855545e-01	ci left: 6.698016e-03	ci right 8.083607e-03	k: 442	n:60000
KS ci ratio: 1.409565e-02	ci left: 5.591366e-01	ci right 5.670906e-01	k: 33787	n:60000
OR6B2   60000 perm   13 sec   (4757 perm/sec)   p_kst 5.631167e-01   p_cons 7.366667e-03   p_joint 2.248333e-02

Joint ci ratio: 1.004313e-01	ci left: 2.022922e-02	ci right 2.238215e-02	k: 1490	n:70000
Cons ci ratio: 1.724357e-01	ci left: 6.696398e-03	ci right 7.973522e-03	k: 512	n:70000
KS ci ratio: 1.303006e-02	ci left: 5.601881e-01	ci right 5.675495e-01	k: 39471	n:70000
OR6B2   70000 perm   15 sec   (4661 perm/sec)   p_kst 5.638714e-01   p_cons 7.314286e-03   p_joint 2.128571e-02

Joint ci ratio: 8.677350e-02	ci left: 2.379454e-02	ci right 2.596510e-02	k: 1989	n:80000
Cons ci ratio: 1.606496e-01	ci left: 6.793776e-03	ci right 7.992364e-03	k: 590	n:80000
KS ci ratio: 1.224088e-02	ci left: 5.583158e-01	ci right 5.652047e-01	k: 44941	n:80000
OR6B2   80000 perm   18 sec   (4524 perm/sec)   p_kst 5.617625e-01   p_cons 7.375000e-03   p_joint 2.486250e-02

Joint ci ratio: 8.743714e-02	ci left: 2.088845e-02	ci right 2.280920e-02	k: 1965	n:90000
Cons ci ratio: 1.514476e-01	ci left: 6.829056e-03	ci right 7.958599e-03	k: 664	n:90000
KS ci ratio: 1.155116e-02	ci left: 5.580728e-01	ci right 5.645677e-01	k: 50519	n:90000
OR6B2   90000 perm   20 sec   (4420 perm/sec)   p_kst 5.613222e-01   p_cons 7.377778e-03   p_joint 2.183333e-02

Joint ci ratio: 8.907210e-02	ci left: 1.815302e-02	ci right 1.985504e-02	k: 1899	n:100000
Cons ci ratio: 1.431779e-01	ci left: 6.907067e-03	ci right 7.981799e-03	k: 743	n:100000
KS ci ratio: 1.095957e-02	ci left: 5.581876e-01	ci right 5.643488e-01	k: 56127	n:100000
OR6B2   100000 perm   23 sec   (4352 perm/sec)   p_kst 5.612700e-01   p_cons 7.430000e-03   p_joint 1.899000e-02

Joint ci ratio: 8.011666e-02	ci left: 2.044595e-02	ci right 2.216124e-02	k: 2342	n:110000
Cons ci ratio: 1.378273e-01	ci left: 6.796637e-03	ci right 7.811419e-03	k: 802	n:110000
KS ci ratio: 1.045933e-02	ci left: 5.578702e-01	ci right 5.637448e-01	k: 61689	n:110000
OR6B2   110000 perm   26 sec   (4284 perm/sec)   p_kst 5.608091e-01   p_cons 7.290909e-03   p_joint 2.129091e-02

Joint ci ratio: 8.059369e-02	ci left: 1.855357e-02	ci right 2.011978e-02	k: 2319	n:120000
Cons ci ratio: 1.326478e-01	ci left: 6.745530e-03	ci right 7.711847e-03	k: 866	n:120000
KS ci ratio: 1.006363e-02	ci left: 5.555598e-01	ci right 5.611873e-01	k: 67005	n:120000
OR6B2   120000 perm   29 sec   (4201 perm/sec)   p_kst 5.583750e-01   p_cons 7.216667e-03   p_joint 1.932500e-02

Joint ci ratio: 8.680052e-02	ci left: 1.477525e-02	ci right 1.612342e-02	k: 2007	n:130000
Cons ci ratio: 1.269851e-01	ci left: 6.814621e-03	ci right 7.746022e-03	k: 945	n:130000
KS ci ratio: 9.669850e-03	ci left: 5.556185e-01	ci right 5.610250e-01	k: 72582	n:130000
OR6B2   130000 perm   31 sec   (4134 perm/sec)   p_kst 5.583231e-01   p_cons 7.269231e-03   p_joint 1.543846e-02

Joint ci ratio: 8.535217e-02	ci left: 1.420893e-02	ci right 1.548271e-02	k: 2077	n:140000
Cons ci ratio: 1.220507e-01	ci left: 6.867666e-03	ci right 7.767207e-03	k: 1023	n:140000
KS ci ratio: 9.322322e-03	ci left: 5.554939e-01	ci right 5.607037e-01	k: 78134	n:140000
OR6B2   140000 perm   34 sec   (4074 perm/sec)   p_kst 5.581000e-01   p_cons 7.307143e-03   p_joint 1.483571e-02

Joint ci ratio: 7.343959e-02	ci left: 1.795499e-02	ci right 1.933037e-02	k: 2795	n:150000
Cons ci ratio: 1.187405e-01	ci left: 6.784826e-03	ci right 7.647720e-03	k: 1081	n:150000
KS ci ratio: 9.008537e-03	ci left: 5.554557e-01	ci right 5.604888e-01	k: 83696	n:150000
OR6B2   150000 perm   37 sec   (4013 perm/sec)   p_kst 5.579733e-01   p_cons 7.206667e-03   p_joint 1.863333e-02

Joint ci ratio: 7.282325e-02	ci left: 1.713932e-02	ci right 1.844073e-02	k: 2845	n:160000
Cons ci ratio: 1.151276e-01	ci left: 6.779410e-03	ci right 7.613597e-03	k: 1150	n:160000
KS ci ratio: 8.714610e-03	ci left: 5.559814e-01	ci right 5.608540e-01	k: 89347	n:160000
OR6B2   160000 perm   40 sec   (3961 perm/sec)   p_kst 5.584187e-01   p_cons 7.187500e-03   p_joint 1.778125e-02

Joint ci ratio: 7.000209e-02	ci left: 1.747735e-02	ci right 1.875093e-02	k: 3078	n:170000
Cons ci ratio: 1.106441e-01	ci left: 6.923698e-03	ci right 7.740298e-03	k: 1245	n:170000
KS ci ratio: 8.445264e-03	ci left: 5.565888e-01	ci right 5.613151e-01	k: 95022	n:170000
OR6B2   170000 perm   44 sec   (3907 perm/sec)   p_kst 5.589529e-01   p_cons 7.323529e-03   p_joint 1.810588e-02

Joint ci ratio: 5.703471e-02	ci left: 2.484237e-02	ci right 2.630629e-02	k: 4602	n:180000
Cons ci ratio: 1.069685e-01	ci left: 7.009245e-03	ci right 7.806743e-03	k: 1332	n:180000
KS ci ratio: 8.205802e-03	ci left: 5.567471e-01	ci right 5.613399e-01	k: 100628	n:180000
OR6B2   180000 perm   47 sec   (3853 perm/sec)   p_kst 5.590444e-01   p_cons 7.400000e-03   p_joint 2.556667e-02

Joint ci ratio: 5.461306e-02	ci left: 2.567853e-02	ci right 2.712545e-02	k: 5015	n:190000
Cons ci ratio: 1.037467e-01	ci left: 7.070805e-03	ci right 7.849599e-03	k: 1416	n:190000
KS ci ratio: 7.983401e-03	ci left: 5.570273e-01	ci right 5.614973e-01	k: 106260	n:190000
OR6B2   190000 perm   50 sec   (3802 perm/sec)   p_kst 5.592632e-01   p_cons 7.452632e-03   p_joint 2.639474e-02

Joint ci ratio: 5.359626e-02	ci left: 2.535136e-02	ci right 2.675242e-02	k: 5209	n:200000
Cons ci ratio: 1.005300e-01	ci left: 7.165532e-03	ci right 7.928845e-03	k: 1508	n:200000
KS ci ratio: 7.780678e-03	ci left: 5.571208e-01	ci right 5.614775e-01	k: 111860	n:200000
OR6B2   200000 perm   53 sec   (3751 perm/sec)   p_kst 5.593000e-01   p_cons 7.540000e-03   p_joint 2.604500e-02

Joint ci ratio: 5.452229e-02	ci left: 2.336840e-02	ci right 2.468288e-02	k: 5044	n:210000
Cons ci ratio: 9.809012e-02	ci left: 7.177235e-03	ci right 7.922170e-03	k: 1584	n:210000
KS ci ratio: 7.603220e-03	ci left: 5.565207e-01	ci right 5.607729e-01	k: 117316	n:210000
OR6B2   210000 perm   57 sec   (3703 perm/sec)   p_kst 5.586476e-01   p_cons 7.542857e-03   p_joint 2.401905e-02

Outputting figure to mutsig2_images.part000000000123/OR6B2.3_943_210000_0.55865_0.0075429_0.024019.png
                gene_name: OR6B2
               theta_stop: 0.098 
                    nperm: 210000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.0075 
      ci_cons_bounds_left: 0.0072 
     ci_cons_bounds_right: 0.0079 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 58 percent done.
OR6C65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.358092e-01	ci left: 7.165494e-02	ci right 8.219310e-02	k: 768	n:10000
Cons ci ratio: 1.958891e-01	ci left: 3.471871e-02	ci right 4.235312e-02	k: 384	n:10000
KS ci ratio: 3.992989e-02	ci left: 4.808558e-01	ci right 5.005496e-01	k: 4907	n:10000
OR6C65   10000 perm   2 sec   (5558 perm/sec)   p_kst 4.907000e-01   p_cons 3.840000e-02   p_joint 7.680000e-02

Joint ci ratio: 6.303024e-02	ci left: 1.569180e-01	ci right 1.671804e-01	k: 3240	n:20000
Cons ci ratio: 1.392719e-01	ci left: 3.544087e-02	ci right 4.079449e-02	k: 761	n:20000
KS ci ratio: 2.804548e-02	ci left: 4.871472e-01	ci right 5.010545e-01	k: 9882	n:20000
OR6C65   20000 perm   4 sec   (4988 perm/sec)   p_kst 4.941000e-01   p_cons 3.805000e-02   p_joint 1.620000e-01

Joint ci ratio: 8.965876e-02	ci left: 5.720815e-02	ci right 6.261080e-02	k: 1796	n:30000
Cons ci ratio: 1.137159e-01	ci left: 3.592946e-02	ci right 4.029391e-02	k: 1142	n:30000
KS ci ratio: 2.301749e-02	ci left: 4.858606e-01	ci right 4.972077e-01	k: 14746	n:30000
OR6C65   30000 perm   6 sec   (4761 perm/sec)   p_kst 4.915333e-01   p_cons 3.806667e-02   p_joint 5.986667e-02

Joint ci ratio: 5.872605e-02	ci left: 9.727404e-02	ci right 1.031841e-01	k: 4008	n:40000
Cons ci ratio: 9.821357e-02	ci left: 3.641590e-02	ci right 4.020151e-02	k: 1531	n:40000
KS ci ratio: 2.010355e-02	ci left: 4.823902e-01	ci right 4.922116e-01	k: 19492	n:40000
OR6C65   40000 perm   9 sec   (4441 perm/sec)   p_kst 4.873000e-01   p_cons 3.827500e-02   p_joint 1.002000e-01

Outputting figure to mutsig2_images.part000000000123/OR6C65.3_943_40000_0.4873_0.038275_0.1002.png
                gene_name: OR6C65
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 59 percent done.
OR6C70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.176015e-02	ci left: 1.792031e-01	ci right 1.945798e-01	k: 1868	n:10000
Cons ci ratio: 5.259752e-02	ci left: 3.476023e-01	ci right 3.664811e-01	k: 3570	n:10000
KS ci ratio: 1.000383e-01	ci left: 1.264020e-01	ci right 1.398125e-01	k: 1330	n:10000
OR6C70   10000 perm   2 sec   (5962 perm/sec)   p_kst 1.330000e-01   p_cons 3.570000e-01   p_joint 1.868000e-01

Joint ci ratio: 6.232029e-02	ci left: 1.599785e-01	ci right 1.703191e-01	k: 3302	n:20000
Cons ci ratio: 3.722438e-02	ci left: 3.500076e-01	ci right 3.633341e-01	k: 7133	n:20000
KS ci ratio: 7.019251e-02	ci left: 1.301446e-01	ci right 1.396618e-01	k: 2697	n:20000
OR6C70   20000 perm   4 sec   (5296 perm/sec)   p_kst 1.348500e-01   p_cons 3.566500e-01   p_joint 1.651000e-01

Outputting figure to mutsig2_images.part000000000123/OR6C70.3_943_20000_0.13485_0.35665_0.1651.png
                gene_name: OR6C70
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 61 percent done.
OR6C76
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.383382e-02	ci left: 8.829867e-01	ci right 8.953856e-01	k: 8893	n:10000
Cons ci ratio: 5.460375e-02	ci left: 3.307132e-01	ci right 3.493801e-01	k: 3400	n:10000
KS ci ratio: 2.127910e-02	ci left: 7.640535e-01	ci right 7.805875e-01	k: 7724	n:10000
OR6C76   10000 perm   2 sec   (6400 perm/sec)   p_kst 7.724000e-01   p_cons 3.400000e-01   p_joint 8.893000e-01

Outputting figure to mutsig2_images.part000000000123/OR6C76.3_943_10000_0.7724_0.34_0.8893.png
                gene_name: OR6C76
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 62 percent done.
OR6F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.194625e-01	ci left: 9.136461e-02	ci right 1.030712e-01	k: 971	n:10000
Cons ci ratio: 1.551513e-01	ci left: 5.532768e-02	ci right 6.473065e-02	k: 599	n:10000
KS ci ratio: 6.369573e-02	ci left: 2.658691e-01	ci right 2.834624e-01	k: 2746	n:10000
OR6F1   10000 perm   2 sec   (6117 perm/sec)   p_kst 2.746000e-01   p_cons 5.990000e-02   p_joint 9.710000e-02

Joint ci ratio: 8.148920e-02	ci left: 9.945851e-02	ci right 1.079571e-01	k: 2073	n:20000
Cons ci ratio: 1.109958e-01	ci left: 5.543290e-02	ci right 6.199612e-02	k: 1173	n:20000
KS ci ratio: 4.532994e-02	ci left: 2.659406e-01	ci right 2.783257e-01	k: 5442	n:20000
OR6F1   20000 perm   4 sec   (5485 perm/sec)   p_kst 2.721000e-01   p_cons 5.865000e-02   p_joint 1.036500e-01

Joint ci ratio: 7.407965e-02	ci left: 8.219554e-02	ci right 8.855170e-02	k: 2560	n:30000
Cons ci ratio: 9.027489e-02	ci left: 5.645771e-02	ci right 6.182806e-02	k: 1773	n:30000
KS ci ratio: 3.701960e-02	ci left: 2.670033e-01	ci right 2.771075e-01	k: 8161	n:30000
OR6F1   30000 perm   6 sec   (5217 perm/sec)   p_kst 2.720333e-01   p_cons 5.910000e-02   p_joint 8.533333e-02

Outputting figure to mutsig2_images.part000000000123/OR6F1.3_931_30000_0.27203_0.0591_0.085333.png
                gene_name: OR6F1
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.089 

Current progress: 64 percent done.
OR6Q1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
Cons ci ratio: 3.325900e-01	ci left: 1.142242e-02	ci right 1.606722e-02	k: 136	n:10000
KS ci ratio: 2.555722e-02	ci left: 6.926251e-01	ci right 7.106573e-01	k: 7017	n:10000
OR6Q1   10000 perm   2 sec   (6158 perm/sec)   p_kst 7.017000e-01   p_cons 1.360000e-02   p_joint 7.950000e-02

Joint ci ratio: 1.187105e-01	ci left: 4.862308e-02	ci right 5.480807e-02	k: 1033	n:20000
Cons ci ratio: 2.488949e-01	ci left: 1.072482e-02	ci right 1.381940e-02	k: 244	n:20000
KS ci ratio: 1.816502e-02	ci left: 6.931426e-01	ci right 7.058994e-01	k: 13991	n:20000
OR6Q1   20000 perm   4 sec   (5248 perm/sec)   p_kst 6.995500e-01   p_cons 1.220000e-02   p_joint 5.165000e-02

Joint ci ratio: 9.506734e-02	ci left: 5.107803e-02	ci right 5.620885e-02	k: 1608	n:30000
Cons ci ratio: 2.011555e-01	ci left: 1.124182e-02	ci right 1.378722e-02	k: 374	n:30000
KS ci ratio: 1.488299e-02	ci left: 6.928694e-01	ci right 7.032922e-01	k: 20943	n:30000
OR6Q1   30000 perm   6 sec   (4901 perm/sec)   p_kst 6.981000e-01   p_cons 1.246667e-02   p_joint 5.360000e-02

Joint ci ratio: 9.858217e-02	ci left: 3.614741e-02	ci right 3.992003e-02	k: 1520	n:40000
Cons ci ratio: 1.785985e-01	ci left: 1.083650e-02	ci right 1.298523e-02	k: 475	n:40000
KS ci ratio: 1.283409e-02	ci left: 6.953818e-01	ci right 7.043891e-01	k: 27996	n:40000
OR6Q1   40000 perm   8 sec   (4753 perm/sec)   p_kst 6.999000e-01   p_cons 1.187500e-02   p_joint 3.800000e-02

Joint ci ratio: 6.287103e-02	ci left: 6.986744e-02	ci right 7.442238e-02	k: 3606	n:50000
Cons ci ratio: 1.567065e-01	ci left: 1.139073e-02	ci right 1.334650e-02	k: 617	n:50000
KS ci ratio: 1.147099e-02	ci left: 6.961625e-01	ci right 7.042143e-01	k: 35010	n:50000
OR6Q1   50000 perm   11 sec   (4702 perm/sec)   p_kst 7.002000e-01   p_cons 1.234000e-02   p_joint 7.212000e-02

Joint ci ratio: 6.054620e-02	ci left: 6.331948e-02	ci right 6.728936e-02	k: 3917	n:60000
Cons ci ratio: 1.436030e-01	ci left: 1.138515e-02	ci right 1.316249e-02	k: 735	n:60000
KS ci ratio: 1.047405e-02	ci left: 6.964156e-01	ci right 7.037650e-01	k: 42006	n:60000
OR6Q1   60000 perm   13 sec   (4641 perm/sec)   p_kst 7.001000e-01   p_cons 1.225000e-02   p_joint 6.528333e-02

Joint ci ratio: 5.629247e-02	ci left: 6.295909e-02	ci right 6.661995e-02	k: 4534	n:70000
Cons ci ratio: 1.326123e-01	ci left: 1.151042e-02	ci right 1.315894e-02	k: 862	n:70000
KS ci ratio: 9.678629e-03	ci left: 6.974927e-01	ci right 7.042906e-01	k: 49063	n:70000
OR6Q1   70000 perm   15 sec   (4582 perm/sec)   p_kst 7.009000e-01   p_cons 1.231429e-02   p_joint 6.477143e-02

Joint ci ratio: 6.903889e-02	ci left: 3.739853e-02	ci right 4.008506e-02	k: 3098	n:80000
Cons ci ratio: 1.332633e-01	ci left: 9.986500e-03	ci right 1.142432e-02	k: 855	n:80000
KS ci ratio: 9.051918e-03	ci left: 6.977890e-01	ci right 7.041465e-01	k: 56078	n:80000
OR6Q1   80000 perm   18 sec   (4515 perm/sec)   p_kst 7.009750e-01   p_cons 1.068750e-02   p_joint 3.872500e-02

Joint ci ratio: 7.516521e-02	ci left: 2.822965e-02	ci right 3.044527e-02	k: 2639	n:90000
Cons ci ratio: 1.261727e-01	ci left: 9.941193e-03	ci right 1.129063e-02	k: 954	n:90000
KS ci ratio: 8.546849e-03	ci left: 6.973507e-01	ci right 7.033475e-01	k: 63032	n:90000
OR6Q1   90000 perm   20 sec   (4429 perm/sec)   p_kst 7.003556e-01   p_cons 1.060000e-02   p_joint 2.932222e-02

Joint ci ratio: 6.899561e-02	ci left: 3.019005e-02	ci right 3.235725e-02	k: 3126	n:100000
Cons ci ratio: 1.195905e-01	ci left: 9.993906e-03	ci right 1.127472e-02	k: 1062	n:100000
KS ci ratio: 8.115899e-03	ci left: 6.971089e-01	ci right 7.027995e-01	k: 69996	n:100000
OR6Q1   100000 perm   23 sec   (4360 perm/sec)   p_kst 6.999600e-01   p_cons 1.062000e-02   p_joint 3.126000e-02

Joint ci ratio: 6.843513e-02	ci left: 2.797153e-02	ci right 2.996250e-02	k: 3185	n:110000
Cons ci ratio: 1.137942e-01	ci left: 1.006504e-02	ci right 1.128824e-02	k: 1173	n:110000
KS ci ratio: 7.746518e-03	ci left: 6.967900e-01	ci right 7.022177e-01	k: 76946	n:110000
OR6Q1   110000 perm   26 sec   (4302 perm/sec)   p_kst 6.995091e-01   p_cons 1.066364e-02   p_joint 2.895455e-02

Joint ci ratio: 6.898870e-02	ci left: 2.529536e-02	ci right 2.711096e-02	k: 3143	n:120000
Cons ci ratio: 1.095883e-01	ci left: 9.971508e-03	ci right 1.113566e-02	k: 1265	n:120000
KS ci ratio: 7.416890e-03	ci left: 6.968970e-01	ci right 7.020933e-01	k: 83940	n:120000
OR6Q1   120000 perm   28 sec   (4244 perm/sec)   p_kst 6.995000e-01   p_cons 1.054167e-02   p_joint 2.619167e-02

Joint ci ratio: 5.847356e-02	ci left: 3.243743e-02	ci right 3.439884e-02	k: 4343	n:130000
Cons ci ratio: 1.053862e-01	ci left: 9.975479e-03	ci right 1.109267e-02	k: 1368	n:130000
KS ci ratio: 7.126963e-03	ci left: 6.969378e-01	ci right 7.019302e-01	k: 90927	n:130000
OR6Q1   130000 perm   31 sec   (4187 perm/sec)   p_kst 6.994385e-01   p_cons 1.052308e-02   p_joint 3.340769e-02

Joint ci ratio: 5.929652e-02	ci left: 2.937307e-02	ci right 3.117502e-02	k: 4237	n:140000
Cons ci ratio: 1.017380e-01	ci left: 9.958727e-03	ci right 1.103312e-02	k: 1468	n:140000
KS ci ratio: 6.871727e-03	ci left: 6.967829e-01	ci right 7.015946e-01	k: 97887	n:140000
OR6Q1   140000 perm   34 sec   (4128 perm/sec)   p_kst 6.991929e-01   p_cons 1.048571e-02   p_joint 3.026429e-02

Joint ci ratio: 6.082118e-02	ci left: 2.612647e-02	ci right 2.777189e-02	k: 4041	n:150000
Cons ci ratio: 9.847586e-02	ci left: 9.938283e-03	ci right 1.097410e-02	k: 1567	n:150000
KS ci ratio: 6.639555e-03	ci left: 6.968119e-01	ci right 7.014604e-01	k: 104871	n:150000
OR6Q1   150000 perm   37 sec   (4069 perm/sec)   p_kst 6.991400e-01   p_cons 1.044667e-02   p_joint 2.694000e-02

Outputting figure to mutsig2_images.part000000000123/OR6Q1.3_958_150000_0.69914_0.010447_0.02694.png
                gene_name: OR6Q1
               theta_stop: 0.098 
                    nperm: 150000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0099 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 65 percent done.
OR6S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.527596e-02	ci left: 8.614127e-01	ci right 8.747721e-01	k: 8682	n:10000
KS ci ratio: 2.650694e-02	ci left: 6.770018e-01	ci right 6.952896e-01	k: 6862	n:10000
OR6S1   10000 perm   2 sec   (6233 perm/sec)   p_kst 6.862000e-01   p_cons 8.682000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR6S1.3_1000_10000_0.6862_0.8682_1.png
                gene_name: OR6S1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
OR6X1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.498301e-02	ci left: 5.467979e-01	ci right 5.663692e-01	k: 5566	n:10000
KS ci ratio: 1.160350e-02	ci left: 9.139945e-01	ci right 9.247597e-01	k: 9195	n:10000
OR6X1   10000 perm   2 sec   (6203 perm/sec)   p_kst 9.195000e-01   p_cons 5.566000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR6X1.3_943_10000_0.9195_0.5566_1.png
                gene_name: OR6X1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
OR7A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.213117e-02	ci left: 3.516775e-01	ci right 3.706035e-01	k: 3611	n:10000
Cons ci ratio: 2.680273e-02	ci left: 6.721660e-01	ci right 6.905282e-01	k: 6814	n:10000
KS ci ratio: 6.694906e-02	ci left: 2.466773e-01	ci right 2.638654e-01	k: 2552	n:10000
OR7A10   10000 perm   2 sec   (5765 perm/sec)   p_kst 2.552000e-01   p_cons 6.814000e-01   p_joint 3.611000e-01

Outputting figure to mutsig2_images.part000000000123/OR7A10.3_934_10000_0.2552_0.6814_0.3611.png
                gene_name: OR7A10
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 70 percent done.
OR7A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.626559e-02	ci left: 4.081086e-01	ci right 4.275393e-01	k: 4178	n:10000
Cons ci ratio: 3.846421e-02	ci left: 4.995504e-01	ci right 5.192441e-01	k: 5094	n:10000
KS ci ratio: 6.498281e-02	ci left: 2.580513e-01	ci right 2.754848e-01	k: 2667	n:10000
OR7A5   10000 perm   2 sec   (6070 perm/sec)   p_kst 2.667000e-01   p_cons 5.094000e-01   p_joint 4.178000e-01

Outputting figure to mutsig2_images.part000000000123/OR7A5.3_964_10000_0.2667_0.5094_0.4178.png
                gene_name: OR7A5
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 71 percent done.
OR7D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.835916e-02	ci left: 6.469974e-01	ci right 6.657114e-01	k: 6564	n:10000
Cons ci ratio: 2.907287e-02	ci left: 6.356307e-01	ci right 6.544847e-01	k: 6451	n:10000
KS ci ratio: 4.485854e-02	ci left: 4.231596e-01	ci right 4.426795e-01	k: 4329	n:10000
OR7D2   10000 perm   2 sec   (6149 perm/sec)   p_kst 4.329000e-01   p_cons 6.451000e-01   p_joint 6.564000e-01

Outputting figure to mutsig2_images.part000000000123/OR7D2.3_943_10000_0.4329_0.6451_0.6564.png
                gene_name: OR7D2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 72 percent done.
OR7G2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.011568e-02	ci left: 6.192445e-01	ci right 6.382804e-01	k: 6288	n:10000
Cons ci ratio: 6.096528e-02	ci left: 2.834963e-01	ci right 3.014247e-01	k: 2924	n:10000
KS ci ratio: 2.701279e-02	ci left: 6.687414e-01	ci right 6.871549e-01	k: 6780	n:10000
OR7G2   10000 perm   2 sec   (6225 perm/sec)   p_kst 6.780000e-01   p_cons 2.924000e-01   p_joint 6.288000e-01

Outputting figure to mutsig2_images.part000000000123/OR7G2.3_1042_10000_0.678_0.2924_0.6288.png
                gene_name: OR7G2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 74 percent done.
OR8B8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.151171e-01	ci left: 9.788810e-02	ci right 1.099437e-01	k: 1038	n:10000
Cons ci ratio: 1.396686e-02	ci left: 8.810413e-01	ci right 8.935320e-01	k: 8874	n:10000
KS ci ratio: 2.945635e-01	ci left: 1.483579e-02	ci right 2.005075e-02	k: 173	n:10000
OR8B8   10000 perm   2 sec   (6097 perm/sec)   p_kst 1.730000e-02   p_cons 8.874000e-01   p_joint 1.038000e-01

Joint ci ratio: 9.837429e-02	ci left: 6.992060e-02	ci right 7.720396e-02	k: 1470	n:20000
Cons ci ratio: 1.012021e-02	ci left: 8.778549e-01	ci right 8.868337e-01	k: 17648	n:20000
KS ci ratio: 2.117242e-01	ci left: 1.506432e-02	ci right 1.867810e-02	k: 336	n:20000
OR8B8   20000 perm   4 sec   (5227 perm/sec)   p_kst 1.680000e-02   p_cons 8.824000e-01   p_joint 7.350000e-02

Joint ci ratio: 8.005878e-02	ci left: 7.102981e-02	ci right 7.698634e-02	k: 2219	n:30000
Cons ci ratio: 8.210984e-03	ci left: 8.800184e-01	ci right 8.873071e-01	k: 26511	n:30000
KS ci ratio: 1.700718e-01	ci left: 1.591865e-02	ci right 1.890919e-02	k: 521	n:30000
OR8B8   30000 perm   6 sec   (5025 perm/sec)   p_kst 1.736667e-02   p_cons 8.837000e-01   p_joint 7.396667e-02

Joint ci ratio: 7.909693e-02	ci left: 5.555726e-02	ci right 6.015719e-02	k: 2313	n:40000
Cons ci ratio: 7.117704e-03	ci left: 8.803156e-01	ci right 8.866286e-01	k: 35340	n:40000
KS ci ratio: 1.491517e-01	ci left: 1.570766e-02	ci right 1.826316e-02	k: 678	n:40000
OR8B8   40000 perm   8 sec   (4887 perm/sec)   p_kst 1.695000e-02   p_cons 8.835000e-01   p_joint 5.782500e-02

Joint ci ratio: 5.981574e-02	ci left: 7.672907e-02	ci right 8.147993e-02	k: 3954	n:50000
Cons ci ratio: 6.340815e-03	ci left: 8.814842e-01	ci right 8.871111e-01	k: 44216	n:50000
KS ci ratio: 1.355958e-01	ci left: 1.532422e-02	ci right 1.757243e-02	k: 821	n:50000
OR8B8   50000 perm   10 sec   (4772 perm/sec)   p_kst 1.642000e-02   p_cons 8.843200e-01   p_joint 7.908000e-02

Joint ci ratio: 5.876855e-02	ci left: 6.700097e-02	ci right 7.107417e-02	k: 4141	n:60000
Cons ci ratio: 5.789811e-03	ci left: 8.816800e-01	ci right 8.868161e-01	k: 53056	n:60000
KS ci ratio: 1.238072e-01	ci left: 1.541501e-02	ci right 1.746548e-02	k: 985	n:60000
OR8B8   60000 perm   13 sec   (4675 perm/sec)   p_kst 1.641667e-02   p_cons 8.842667e-01   p_joint 6.901667e-02

Joint ci ratio: 5.428458e-02	ci left: 6.744349e-02	ci right 7.122088e-02	k: 4852	n:70000
Cons ci ratio: 5.389306e-03	ci left: 8.807544e-01	ci right 8.855281e-01	k: 61821	n:70000
KS ci ratio: 1.142871e-01	ci left: 1.558313e-02	ci right 1.748582e-02	k: 1156	n:70000
OR8B8   70000 perm   15 sec   (4595 perm/sec)   p_kst 1.651429e-02   p_cons 8.831571e-01   p_joint 6.931429e-02

Joint ci ratio: 5.578331e-02	ci left: 5.651343e-02	ci right 5.976871e-02	k: 4650	n:80000
Cons ci ratio: 5.054203e-03	ci left: 8.803745e-01	ci right 8.848477e-01	k: 70610	n:80000
KS ci ratio: 1.065495e-01	ci left: 1.575029e-02	ci right 1.753501e-02	k: 1330	n:80000
OR8B8   80000 perm   18 sec   (4520 perm/sec)   p_kst 1.662500e-02   p_cons 8.826250e-01   p_joint 5.812500e-02

Joint ci ratio: 5.285293e-02	ci left: 5.607560e-02	ci right 5.913077e-02	k: 5183	n:90000
Cons ci ratio: 4.774136e-03	ci left: 8.801096e-01	ci right 8.843324e-01	k: 79401	n:90000
KS ci ratio: 1.006054e-01	ci left: 1.575365e-02	ci right 1.743327e-02	k: 1492	n:90000
OR8B8   90000 perm   20 sec   (4434 perm/sec)   p_kst 1.657778e-02   p_cons 8.822333e-01   p_joint 5.758889e-02

Joint ci ratio: 4.962174e-02	ci left: 5.728056e-02	ci right 6.020510e-02	k: 5873	n:100000
Cons ci ratio: 4.520483e-03	ci left: 8.806190e-01	ci right 8.846188e-01	k: 88263	n:100000
KS ci ratio: 9.511932e-02	ci left: 1.590504e-02	ci right 1.750317e-02	k: 1669	n:100000
OR8B8   100000 perm   23 sec   (4305 perm/sec)   p_kst 1.669000e-02   p_cons 8.826300e-01   p_joint 5.873000e-02

Outputting figure to mutsig2_images.part000000000123/OR8B8.3_940_100000_0.01669_0.88263_0.05873.png
                gene_name: OR8B8
               theta_stop: 0.095 
                    nperm: 100000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.057 
    ci_joint_bounds_right: 0.060 

Current progress: 75 percent done.
OR8D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.989677e-02	ci left: 6.226615e-01	ci right 6.416614e-01	k: 6322	n:10000
Cons ci ratio: 6.095056e-02	ci left: 2.835954e-01	ci right 3.015256e-01	k: 2925	n:10000
KS ci ratio: 2.348272e-02	ci left: 7.271416e-01	ci right 7.445209e-01	k: 7359	n:10000
OR8D2   10000 perm   2 sec   (6202 perm/sec)   p_kst 7.359000e-01   p_cons 2.925000e-01   p_joint 6.322000e-01

Outputting figure to mutsig2_images.part000000000123/OR8D2.3_940_10000_0.7359_0.2925_0.6322.png
                gene_name: OR8D2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 77 percent done.
OR5B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.127142e-02	ci left: 9.183224e-01	ci right 9.288293e-01	k: 9237	n:10000
Cons ci ratio: 3.819582e-02	ci left: 5.030509e-01	ci right 5.227416e-01	k: 5129	n:10000
KS ci ratio: 3.327861e-02	ci left: 5.713575e-01	ci right 5.907953e-01	k: 5811	n:10000
OR5B2   10000 perm   2 sec   (6098 perm/sec)   p_kst 5.811000e-01   p_cons 5.129000e-01   p_joint 9.237000e-01

Outputting figure to mutsig2_images.part000000000123/OR5B2.2_934_10000_0.5811_0.5129_0.9237.png
                gene_name: OR5B2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 78 percent done.
OR5D16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.243869e-02	ci left: 7.446266e-01	ci right 7.616257e-01	k: 7532	n:10000
KS ci ratio: 1.647107e-01	ci left: 4.917009e-02	ci right 5.809220e-02	k: 535	n:10000
OR5D16   10000 perm   2 sec   (5943 perm/sec)   p_kst 5.350000e-02   p_cons 7.532000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.573010e-02	ci left: 7.503889e-01	ci right 7.623364e-01	k: 15128	n:20000
KS ci ratio: 1.184690e-01	ci left: 4.881745e-02	ci right 5.501365e-02	k: 1037	n:20000
OR5D16   20000 perm   4 sec   (5257 perm/sec)   p_kst 5.185000e-02   p_cons 7.564000e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.401196e-02	ci left: 7.177973e-01	ci right 7.279595e-01	k: 21687	n:30000
KS ci ratio: 9.735842e-02	ci left: 4.876538e-02	ci right 5.378864e-02	k: 1537	n:30000
OR5D16   30000 perm   6 sec   (5150 perm/sec)   p_kst 5.123333e-02   p_cons 7.229000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR5D16.2_991_30000_0.051233_0.7229_1.png
                gene_name: OR5D16
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
OR5K4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.611385e-02	ci left: 6.834513e-01	ci right 7.016364e-01	k: 6926	n:10000
Cons ci ratio: 2.739085e-02	ci left: 6.625985e-01	ci right 6.811013e-01	k: 6719	n:10000
KS ci ratio: 5.028518e-02	ci left: 3.683836e-01	ci right 3.874876e-01	k: 3779	n:10000
OR5K4   10000 perm   2 sec   (5852 perm/sec)   p_kst 3.779000e-01   p_cons 6.719000e-01   p_joint 6.926000e-01

Outputting figure to mutsig2_images.part000000000123/OR5K4.2_970_10000_0.3779_0.6719_0.6926.png
                gene_name: OR5K4
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 81 percent done.
OR5M1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.808752e-03	ci left: 9.673099e-01	ci right 9.740122e-01	k: 9708	n:10000
KS ci ratio: 6.171684e-03	ci left: 9.727020e-01	ci right 9.788166e-01	k: 9759	n:10000
OR5M1   10000 perm   2 sec   (6633 perm/sec)   p_kst 9.759000e-01   p_cons 9.708000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR5M1.2_952_10000_0.9759_0.9708_1.png
                gene_name: OR5M1
               theta_stop: 0.0068 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
OR5M10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.925331e-01	ci left: 3.595770e-02	ci right 4.371330e-02	k: 397	n:10000
Cons ci ratio: 7.949257e-02	ci left: 1.877666e-01	ci right 2.034111e-01	k: 1955	n:10000
KS ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
OR5M10   10000 perm   2 sec   (6488 perm/sec)   p_kst 1.090000e-02   p_cons 1.955000e-01   p_joint 3.970000e-02

Joint ci ratio: 4.077371e-01	ci left: 3.664911e-03	ci right 5.583495e-03	k: 91	n:20000
Cons ci ratio: 5.663373e-02	ci left: 1.877482e-01	ci right 1.987411e-01	k: 3864	n:20000
KS ci ratio: 2.598528e-01	ci left: 9.787930e-03	ci right 1.275672e-02	k: 224	n:20000
OR5M10   20000 perm   3 sec   (5759 perm/sec)   p_kst 1.120000e-02   p_cons 1.932000e-01   p_joint 4.550000e-03

Joint ci ratio: 3.391472e-01	ci left: 3.682707e-03	ci right 5.215703e-03	k: 132	n:30000
Cons ci ratio: 4.585698e-02	ci left: 1.913557e-01	ci right 2.003700e-01	k: 5875	n:30000
KS ci ratio: 2.169337e-01	ci left: 9.598201e-03	ci right 1.196464e-02	k: 322	n:30000
OR5M10   30000 perm   6 sec   (5383 perm/sec)   p_kst 1.073333e-02   p_cons 1.958333e-01   p_joint 4.400000e-03

Joint ci ratio: 1.993389e-01	ci left: 8.620141e-03	ci right 1.055206e-02	k: 382	n:40000
Cons ci ratio: 3.962746e-02	ci left: 1.926405e-01	ci right 2.004536e-01	k: 7861	n:40000
KS ci ratio: 1.907267e-01	ci left: 9.452805e-03	ci right 1.146921e-02	k: 417	n:40000
OR5M10   40000 perm   8 sec   (5193 perm/sec)   p_kst 1.042500e-02   p_cons 1.965250e-01   p_joint 9.550000e-03

Joint ci ratio: 2.759364e-01	ci left: 3.465711e-03	ci right 4.593073e-03	k: 200	n:50000
Cons ci ratio: 3.567564e-02	ci left: 1.910185e-01	ci right 1.979770e-01	k: 9724	n:50000
KS ci ratio: 1.737267e-01	ci left: 9.203821e-03	ci right 1.097375e-02	k: 503	n:50000
OR5M10   50000 perm   10 sec   (5003 perm/sec)   p_kst 1.006000e-02   p_cons 1.944800e-01   p_joint 4.000000e-03

Joint ci ratio: 2.499257e-01	ci left: 3.573225e-03	ci right 4.608982e-03	k: 244	n:60000
Cons ci ratio: 3.252231e-02	ci left: 1.917535e-01	ci right 1.981094e-01	k: 11695	n:60000
KS ci ratio: 1.599042e-01	ci left: 9.123252e-03	ci right 1.072469e-02	k: 594	n:60000
OR5M10   60000 perm   12 sec   (4858 perm/sec)   p_kst 9.900000e-03   p_cons 1.949167e-01   p_joint 4.066667e-03

Joint ci ratio: 1.877983e-01	ci left: 5.604672e-03	ci right 6.779684e-03	k: 432	n:70000
Cons ci ratio: 3.010892e-02	ci left: 1.919995e-01	ci right 1.978830e-01	k: 13645	n:70000
KS ci ratio: 1.482766e-01	ci left: 9.152280e-03	ci right 1.063163e-02	k: 691	n:70000
OR5M10   70000 perm   15 sec   (4735 perm/sec)   p_kst 9.871429e-03   p_cons 1.949286e-01   p_joint 6.171429e-03

Joint ci ratio: 2.156704e-01	ci left: 3.669020e-03	ci right 4.567529e-03	k: 328	n:80000
Cons ci ratio: 2.815920e-02	ci left: 1.922469e-01	ci right 1.977502e-01	k: 15599	n:80000
KS ci ratio: 1.393115e-01	ci left: 9.116886e-03	ci right 1.049401e-02	k: 783	n:80000
OR5M10   80000 perm   17 sec   (4668 perm/sec)   p_kst 9.787500e-03   p_cons 1.949875e-01   p_joint 4.100000e-03

Joint ci ratio: 2.036472e-01	ci left: 3.682478e-03	ci right 4.527755e-03	k: 368	n:90000
Cons ci ratio: 2.652623e-02	ci left: 1.926701e-01	ci right 1.978607e-01	k: 17573	n:90000
KS ci ratio: 1.307467e-01	ci left: 9.241956e-03	ci right 1.054548e-02	k: 889	n:90000
OR5M10   90000 perm   20 sec   (4596 perm/sec)   p_kst 9.877778e-03   p_cons 1.952556e-01   p_joint 4.088889e-03

Joint ci ratio: 1.927253e-01	ci left: 3.722912e-03	ci right 4.526269e-03	k: 411	n:100000
Cons ci ratio: 2.520162e-02	ci left: 1.923492e-01	ci right 1.972685e-01	k: 19480	n:100000
KS ci ratio: 1.237777e-01	ci left: 9.315005e-03	ci right 1.055367e-02	k: 992	n:100000
OR5M10   100000 perm   22 sec   (4481 perm/sec)   p_kst 9.920000e-03   p_cons 1.948000e-01   p_joint 4.110000e-03

Joint ci ratio: 1.821888e-01	ci left: 3.809044e-03	ci right 4.581093e-03	k: 460	n:110000
Cons ci ratio: 2.397055e-02	ci left: 1.932232e-01	ci right 1.979201e-01	k: 21512	n:110000
KS ci ratio: 1.172233e-01	ci left: 9.473371e-03	ci right 1.066177e-02	k: 1106	n:110000
OR5M10   110000 perm   25 sec   (4363 perm/sec)   p_kst 1.005455e-02   p_cons 1.955636e-01   p_joint 4.181818e-03

Joint ci ratio: 1.749414e-01	ci left: 3.802100e-03	ci right 4.538846e-03	k: 499	n:120000
Cons ci ratio: 2.295475e-02	ci left: 1.932594e-01	ci right 1.977554e-01	k: 23460	n:120000
KS ci ratio: 1.124511e-01	ci left: 9.460944e-03	ci right 1.059626e-02	k: 1202	n:120000
OR5M10   120000 perm   28 sec   (4294 perm/sec)   p_kst 1.001667e-02   p_cons 1.955000e-01   p_joint 4.158333e-03

Joint ci ratio: 1.190631e-01	ci left: 7.776640e-03	ci right 8.768559e-03	k: 1074	n:130000
Cons ci ratio: 2.207856e-02	ci left: 1.930024e-01	ci right 1.973189e-01	k: 25370	n:130000
KS ci ratio: 1.077996e-01	ci left: 9.526126e-03	ci right 1.061897e-02	k: 1308	n:130000
OR5M10   130000 perm   31 sec   (4228 perm/sec)   p_kst 1.006154e-02   p_cons 1.951538e-01   p_joint 8.261538e-03

Joint ci ratio: 1.088506e-01	ci left: 8.678697e-03	ci right 9.684646e-03	k: 1284	n:140000
Cons ci ratio: 2.128542e-02	ci left: 1.929345e-01	ci right 1.970924e-01	k: 27301	n:140000
KS ci ratio: 1.035704e-01	ci left: 9.603703e-03	ci right 1.065959e-02	k: 1417	n:140000
OR5M10   140000 perm   34 sec   (4166 perm/sec)   p_kst 1.012143e-02   p_cons 1.950071e-01   p_joint 9.171429e-03

Joint ci ratio: 1.188512e-01	ci left: 6.771886e-03	ci right 7.633994e-03	k: 1079	n:150000
Cons ci ratio: 2.057509e-02	ci left: 1.928315e-01	ci right 1.968469e-01	k: 29225	n:150000
KS ci ratio: 1.001681e-01	ci left: 9.600144e-03	ci right 1.061893e-02	k: 1515	n:150000
OR5M10   150000 perm   37 sec   (4107 perm/sec)   p_kst 1.010000e-02   p_cons 1.948333e-01   p_joint 7.193333e-03

Joint ci ratio: 1.023341e-01	ci left: 8.622223e-03	ci right 9.558196e-03	k: 1453	n:160000
Cons ci ratio: 1.991397e-02	ci left: 1.930175e-01	ci right 1.969061e-01	k: 31193	n:160000
KS ci ratio: 9.659784e-02	ci left: 9.695128e-03	ci right 1.068524e-02	k: 1629	n:160000
OR5M10   160000 perm   40 sec   (4047 perm/sec)   p_kst 1.018125e-02   p_cons 1.949562e-01   p_joint 9.081250e-03

Joint ci ratio: 9.943709e-02	ci left: 8.608148e-03	ci right 9.514596e-03	k: 1539	n:170000
Cons ci ratio: 1.930623e-02	ci left: 1.932888e-01	ci right 1.970627e-01	k: 33179	n:170000
KS ci ratio: 9.371027e-02	ci left: 9.710552e-03	ci right 1.067097e-02	k: 1731	n:170000
OR5M10   170000 perm   43 sec   (3988 perm/sec)   p_kst 1.018235e-02   p_cons 1.951706e-01   p_joint 9.052941e-03

Outputting figure to mutsig2_images.part000000000123/OR5M10.2_952_170000_0.010182_0.19517_0.0090529.png
                gene_name: OR5M10
               theta_stop: 0.099 
                    nperm: 170000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0097 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.0091 
     ci_joint_bounds_left: 0.0086 
    ci_joint_bounds_right: 0.0095 

Current progress: 84 percent done.
OR6A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
Cons ci ratio: 5.964782e-01	ci left: 3.028617e-03	ci right 5.672985e-03	k: 42	n:10000
KS ci ratio: 2.560455e-01	ci left: 1.996408e-02	ci right 2.591832e-02	k: 228	n:10000
OR6A2   10000 perm   2 sec   (6001 perm/sec)   p_kst 2.280000e-02   p_cons 4.200000e-03   p_joint 2.000000e-04

Joint ci ratio: 1.181570e+00	ci left: 2.397946e-04	ci right 9.193249e-04	k: 10	n:20000
Cons ci ratio: 3.991121e-01	ci left: 3.844683e-03	ci right 5.803559e-03	k: 95	n:20000
KS ci ratio: 1.816657e-01	ci left: 2.068037e-02	ci right 2.485997e-02	k: 454	n:20000
OR6A2   20000 perm   4 sec   (5578 perm/sec)   p_kst 2.270000e-02   p_cons 4.750000e-03   p_joint 5.000000e-04

Joint ci ratio: 7.036772e-01	ci left: 6.747943e-04	ci right 1.427257e-03	k: 30	n:30000
Cons ci ratio: 3.512923e-01	ci left: 3.408625e-03	ci right 4.889942e-03	k: 123	n:30000
KS ci ratio: 1.487213e-01	ci left: 2.094787e-02	ci right 2.434544e-02	k: 678	n:30000
OR6A2   30000 perm   6 sec   (5363 perm/sec)   p_kst 2.260000e-02   p_cons 4.100000e-03   p_joint 1.000000e-03

Joint ci ratio: 6.530311e-01	ci left: 6.095429e-04	ci right 1.216705e-03	k: 35	n:40000
Cons ci ratio: 2.991247e-01	ci left: 3.636202e-03	ci right 4.937384e-03	k: 170	n:40000
KS ci ratio: 1.297037e-01	ci left: 2.087524e-02	ci right 2.379468e-02	k: 892	n:40000
OR6A2   40000 perm   8 sec   (5207 perm/sec)   p_kst 2.230000e-02   p_cons 4.250000e-03   p_joint 8.750000e-04

Joint ci ratio: 8.171803e-01	ci left: 2.757655e-04	ci right 6.660900e-04	k: 22	n:50000
Cons ci ratio: 2.680186e-01	ci left: 3.689404e-03	ci right 4.849313e-03	k: 212	n:50000
KS ci ratio: 1.175412e-01	ci left: 2.047956e-02	ci right 2.305638e-02	k: 1087	n:50000
OR6A2   50000 perm   10 sec   (5056 perm/sec)   p_kst 2.174000e-02   p_cons 4.240000e-03   p_joint 4.400000e-04

Joint ci ratio: 7.038650e-01	ci left: 3.373725e-04	ci right 7.137048e-04	k: 30	n:60000
Cons ci ratio: 2.380243e-01	ci left: 3.964525e-03	ci right 5.050927e-03	k: 269	n:60000
KS ci ratio: 1.065764e-01	ci left: 2.087360e-02	ci right 2.323961e-02	k: 1322	n:60000
OR6A2   60000 perm   12 sec   (4892 perm/sec)   p_kst 2.203333e-02   p_cons 4.483333e-03   p_joint 5.000000e-04

Joint ci ratio: 6.624305e-01	ci left: 3.363940e-04	ci right 6.786715e-04	k: 34	n:70000
Cons ci ratio: 2.162680e-01	ci left: 4.166259e-03	ci right 5.189752e-03	k: 326	n:70000
KS ci ratio: 9.832922e-02	ci left: 2.110731e-02	ci right 2.330397e-02	k: 1553	n:70000
OR6A2   70000 perm   15 sec   (4706 perm/sec)   p_kst 2.218571e-02   p_cons 4.657143e-03   p_joint 4.857143e-04

Joint ci ratio: 4.129692e-01	ci left: 8.935212e-04	ci right 1.368851e-03	k: 89	n:80000
Cons ci ratio: 2.022228e-01	ci left: 4.202227e-03	ci right 5.159238e-03	k: 373	n:80000
KS ci ratio: 9.221789e-02	ci left: 2.106797e-02	ci right 2.311689e-02	k: 1766	n:80000
OR6A2   80000 perm   17 sec   (4633 perm/sec)   p_kst 2.207500e-02   p_cons 4.662500e-03   p_joint 1.112500e-03

Joint ci ratio: 3.841633e-01	ci left: 9.342257e-04	ci right 1.387803e-03	k: 103	n:90000
Cons ci ratio: 1.899220e-01	ci left: 4.263630e-03	ci right 5.168748e-03	k: 423	n:90000
KS ci ratio: 8.712055e-02	ci left: 2.104069e-02	ci right 2.296807e-02	k: 1979	n:90000
OR6A2   90000 perm   20 sec   (4512 perm/sec)   p_kst 2.198889e-02   p_cons 4.700000e-03   p_joint 1.144444e-03

Joint ci ratio: 2.306542e-01	ci left: 2.547930e-03	ci right 3.221417e-03	k: 287	n:100000
Cons ci ratio: 1.792439e-01	ci left: 4.333269e-03	ci right 5.195842e-03	k: 475	n:100000
KS ci ratio: 8.323197e-02	ci left: 2.079604e-02	ci right 2.261185e-02	k: 2169	n:100000
OR6A2   100000 perm   23 sec   (4438 perm/sec)   p_kst 2.169000e-02   p_cons 4.750000e-03   p_joint 2.870000e-03

Joint ci ratio: 2.184726e-01	ci left: 2.599443e-03	ci right 3.245389e-03	k: 320	n:110000
Cons ci ratio: 1.713304e-01	ci left: 4.330483e-03	ci right 5.150510e-03	k: 520	n:110000
KS ci ratio: 7.920610e-02	ci left: 2.091837e-02	ci right 2.265243e-02	k: 2395	n:110000
OR6A2   110000 perm   25 sec   (4358 perm/sec)   p_kst 2.177273e-02   p_cons 4.727273e-03   p_joint 2.909091e-03

Joint ci ratio: 1.804609e-01	ci left: 3.563178e-03	ci right 4.277791e-03	k: 469	n:120000
Cons ci ratio: 1.611232e-01	ci left: 4.512754e-03	ci right 5.311461e-03	k: 588	n:120000
KS ci ratio: 7.571305e-02	ci left: 2.102207e-02	ci right 2.268448e-02	k: 2621	n:120000
OR6A2   120000 perm   28 sec   (4238 perm/sec)   p_kst 2.184167e-02   p_cons 4.900000e-03   p_joint 3.908333e-03

Joint ci ratio: 1.715586e-01	ci left: 3.656782e-03	ci right 4.350246e-03	k: 519	n:130000
Cons ci ratio: 1.537265e-01	ci left: 4.594218e-03	ci right 5.366578e-03	k: 646	n:130000
KS ci ratio: 7.269699e-02	ci left: 2.108102e-02	ci right 2.267887e-02	k: 2843	n:130000
OR6A2   130000 perm   31 sec   (4174 perm/sec)   p_kst 2.186923e-02   p_cons 4.969231e-03   p_joint 3.992308e-03

Joint ci ratio: 1.634243e-01	ci left: 3.758309e-03	ci right 4.433914e-03	k: 572	n:140000
Cons ci ratio: 1.460192e-01	ci left: 4.747346e-03	ci right 5.501946e-03	k: 716	n:140000
KS ci ratio: 6.978250e-02	ci left: 2.127308e-02	ci right 2.281823e-02	k: 3085	n:140000
OR6A2   140000 perm   34 sec   (4113 perm/sec)   p_kst 2.203571e-02   p_cons 5.114286e-03   p_joint 4.085714e-03

Joint ci ratio: 1.571048e-01	ci left: 3.808532e-03	ci right 4.464196e-03	k: 619	n:150000
Cons ci ratio: 1.404459e-01	ci left: 4.803679e-03	ci right 5.535649e-03	k: 774	n:150000
KS ci ratio: 6.717189e-02	ci left: 2.145376e-02	ci right 2.295146e-02	k: 3329	n:150000
OR6A2   150000 perm   37 sec   (4057 perm/sec)   p_kst 2.219333e-02   p_cons 5.160000e-03   p_joint 4.126667e-03

Joint ci ratio: 1.535606e-01	ci left: 3.744694e-03	ci right 4.373486e-03	k: 648	n:160000
Cons ci ratio: 1.354655e-01	ci left: 4.853448e-03	ci right 5.564663e-03	k: 832	n:160000
KS ci ratio: 6.504828e-02	ci left: 2.147132e-02	ci right 2.292107e-02	k: 3550	n:160000
OR6A2   160000 perm   40 sec   (3987 perm/sec)   p_kst 2.218750e-02   p_cons 5.200000e-03   p_joint 4.050000e-03

Joint ci ratio: 1.493636e-01	ci left: 3.733816e-03	ci right 4.342114e-03	k: 685	n:170000
Cons ci ratio: 1.320267e-01	ci left: 4.818109e-03	ci right 5.504816e-03	k: 876	n:170000
KS ci ratio: 6.308848e-02	ci left: 2.150485e-02	ci right 2.291151e-02	k: 3774	n:170000
OR6A2   170000 perm   43 sec   (3919 perm/sec)   p_kst 2.220000e-02   p_cons 5.152941e-03   p_joint 4.029412e-03

Joint ci ratio: 1.447908e-01	ci left: 3.761835e-03	ci right 4.354313e-03	k: 729	n:180000
Cons ci ratio: 1.278640e-01	ci left: 4.862192e-03	ci right 5.531675e-03	k: 934	n:180000
KS ci ratio: 6.136643e-02	ci left: 2.148599e-02	ci right 2.285169e-02	k: 3989	n:180000
OR6A2   180000 perm   47 sec   (3864 perm/sec)   p_kst 2.216111e-02   p_cons 5.188889e-03   p_joint 4.050000e-03

Joint ci ratio: 1.407051e-01	ci left: 3.782080e-03	ci right 4.359528e-03	k: 772	n:190000
Cons ci ratio: 1.248321e-01	ci left: 4.840737e-03	ci right 5.490292e-03	k: 980	n:190000
KS ci ratio: 5.979265e-02	ci left: 2.145921e-02	ci right 2.278701e-02	k: 4202	n:190000
OR6A2   190000 perm   50 sec   (3812 perm/sec)   p_kst 2.211579e-02   p_cons 5.157895e-03   p_joint 4.063158e-03

Joint ci ratio: 1.372003e-01	ci left: 3.786024e-03	ci right 4.348500e-03	k: 812	n:200000
Cons ci ratio: 1.215313e-01	ci left: 4.860383e-03	ci right 5.494089e-03	k: 1034	n:200000
KS ci ratio: 5.838139e-02	ci left: 2.140101e-02	ci right 2.269290e-02	k: 4408	n:200000
OR6A2   200000 perm   53 sec   (3762 perm/sec)   p_kst 2.204000e-02   p_cons 5.170000e-03   p_joint 4.060000e-03

Joint ci ratio: 1.340240e-01	ci left: 3.785151e-03	ci right 4.333440e-03	k: 851	n:210000
Cons ci ratio: 1.188638e-01	ci left: 4.846015e-03	ci right 5.463004e-03	k: 1081	n:210000
KS ci ratio: 5.704027e-02	ci left: 2.136747e-02	ci right 2.262673e-02	k: 4618	n:210000
OR6A2   210000 perm   57 sec   (3703 perm/sec)   p_kst 2.199048e-02   p_cons 5.147619e-03   p_joint 4.052381e-03

Joint ci ratio: 1.309110e-01	ci left: 3.793288e-03	ci right 4.329000e-03	k: 892	n:220000
Cons ci ratio: 1.161065e-01	ci left: 4.855160e-03	ci right 5.457991e-03	k: 1133	n:220000
KS ci ratio: 5.579933e-02	ci left: 2.132832e-02	ci right 2.255704e-02	k: 4826	n:220000
OR6A2   220000 perm   60 sec   (3655 perm/sec)   p_kst 2.193636e-02   p_cons 5.150000e-03   p_joint 4.054545e-03

Joint ci ratio: 1.282123e-01	ci left: 3.788224e-03	ci right 4.311353e-03	k: 930	n:230000
Cons ci ratio: 1.140167e-01	ci left: 4.821415e-03	ci right 5.408555e-03	k: 1175	n:230000
KS ci ratio: 5.464156e-02	ci left: 2.128856e-02	ci right 2.248874e-02	k: 5033	n:230000
OR6A2   230000 perm   64 sec   (3606 perm/sec)   p_kst 2.188261e-02   p_cons 5.108696e-03   p_joint 4.043478e-03

Joint ci ratio: 1.256087e-01	ci left: 3.787722e-03	ci right 4.299370e-03	k: 969	n:240000
Cons ci ratio: 1.115307e-01	ci left: 4.835129e-03	ci right 5.410256e-03	k: 1228	n:240000
KS ci ratio: 5.354253e-02	ci left: 2.126059e-02	ci right 2.243433e-02	k: 5242	n:240000
OR6A2   240000 perm   67 sec   (3558 perm/sec)   p_kst 2.184167e-02   p_cons 5.116667e-03   p_joint 4.037500e-03

Joint ci ratio: 1.236508e-01	ci left: 3.756343e-03	ci right 4.255264e-03	k: 1000	n:250000
Cons ci ratio: 1.096745e-01	ci left: 4.805072e-03	ci right 5.366497e-03	k: 1270	n:250000
KS ci ratio: 5.241887e-02	ci left: 2.130615e-02	ci right 2.245698e-02	k: 5469	n:250000
OR6A2   250000 perm   71 sec   (3507 perm/sec)   p_kst 2.187600e-02   p_cons 5.080000e-03   p_joint 4.000000e-03

Joint ci ratio: 1.207868e-01	ci left: 3.790844e-03	ci right 4.281852e-03	k: 1048	n:260000
Cons ci ratio: 1.068498e-01	ci left: 4.874727e-03	ci right 5.428700e-03	k: 1338	n:260000
KS ci ratio: 5.140001e-02	ci left: 2.131806e-02	ci right 2.244648e-02	k: 5688	n:260000
OR6A2   260000 perm   75 sec   (3464 perm/sec)   p_kst 2.187692e-02   p_cons 5.146154e-03   p_joint 4.030769e-03

Joint ci ratio: 1.191536e-01	ci left: 3.754622e-03	ci right 4.233899e-03	k: 1077	n:270000
Cons ci ratio: 1.051378e-01	ci left: 4.852822e-03	ci right 5.394922e-03	k: 1382	n:270000
KS ci ratio: 5.036431e-02	ci left: 2.139147e-02	ci right 2.250031e-02	k: 5924	n:270000
OR6A2   270000 perm   79 sec   (3422 perm/sec)   p_kst 2.194074e-02   p_cons 5.118519e-03   p_joint 3.988889e-03

Joint ci ratio: 1.164290e-01	ci left: 3.797310e-03	ci right 4.270189e-03	k: 1128	n:280000
Cons ci ratio: 1.031791e-01	ci left: 4.863863e-03	ci right 5.396460e-03	k: 1435	n:280000
KS ci ratio: 4.943804e-02	ci left: 2.141751e-02	ci right 2.250670e-02	k: 6148	n:280000
OR6A2   280000 perm   83 sec   (3355 perm/sec)   p_kst 2.195714e-02   p_cons 5.125000e-03   p_joint 4.028571e-03

Joint ci ratio: 1.141260e-01	ci left: 3.820418e-03	ci right 4.286131e-03	k: 1174	n:290000
Cons ci ratio: 1.013258e-01	ci left: 4.874229e-03	ci right 5.397804e-03	k: 1488	n:290000
KS ci ratio: 4.857665e-02	ci left: 2.142831e-02	ci right 2.249852e-02	k: 6368	n:290000
OR6A2   290000 perm   88 sec   (3312 perm/sec)   p_kst 2.195862e-02   p_cons 5.131034e-03   p_joint 4.048276e-03

Joint ci ratio: 1.124178e-01	ci left: 3.809670e-03	ci right 4.266660e-03	k: 1210	n:300000
Cons ci ratio: 9.953656e-02	ci left: 4.887235e-03	ci right 5.402396e-03	k: 1542	n:300000
KS ci ratio: 4.778845e-02	ci left: 2.141218e-02	ci right 2.246375e-02	k: 6580	n:300000
OR6A2   300000 perm   92 sec   (3261 perm/sec)   p_kst 2.193333e-02   p_cons 5.140000e-03   p_joint 4.033333e-03

Joint ci ratio: 1.107840e-01	ci left: 3.799663e-03	ci right 4.248396e-03	k: 1246	n:310000
Cons ci ratio: 9.786966e-02	ci left: 4.896331e-03	ci right 5.403310e-03	k: 1595	n:310000
KS ci ratio: 4.702325e-02	ci left: 2.140997e-02	ci right 2.244415e-02	k: 6796	n:310000
OR6A2   310000 perm   96 sec   (3222 perm/sec)   p_kst 2.192258e-02   p_cons 5.145161e-03   p_joint 4.019355e-03

Joint ci ratio: 1.092194e-01	ci left: 3.790327e-03	ci right 4.231229e-03	k: 1282	n:320000
Cons ci ratio: 9.587554e-02	ci left: 4.947629e-03	ci right 5.448896e-03	k: 1662	n:320000
KS ci ratio: 4.636470e-02	ci left: 2.134316e-02	ci right 2.235928e-02	k: 6991	n:320000
OR6A2   320000 perm   101 sec   (3169 perm/sec)   p_kst 2.184688e-02   p_cons 5.193750e-03   p_joint 4.006250e-03

Joint ci ratio: 1.078013e-01	ci left: 3.775701e-03	ci right 4.208838e-03	k: 1316	n:330000
Cons ci ratio: 9.446624e-02	ci left: 4.945609e-03	ci right 5.438899e-03	k: 1712	n:330000
KS ci ratio: 4.557448e-02	ci left: 2.142731e-02	ci right 2.242960e-02	k: 7235	n:330000
OR6A2   330000 perm   105 sec   (3135 perm/sec)   p_kst 2.192424e-02   p_cons 5.187879e-03   p_joint 3.987879e-03

Joint ci ratio: 1.059267e-01	ci left: 3.799194e-03	ci right 4.226974e-03	k: 1363	n:340000
Cons ci ratio: 9.290565e-02	ci left: 4.966744e-03	ci right 5.453512e-03	k: 1770	n:340000
KS ci ratio: 4.490627e-02	ci left: 2.142811e-02	ci right 2.241536e-02	k: 7452	n:340000
OR6A2   340000 perm   110 sec   (3103 perm/sec)   p_kst 2.191765e-02   p_cons 5.205882e-03   p_joint 4.008824e-03

Joint ci ratio: 1.002609e-01	ci left: 4.130477e-03	ci right 4.569220e-03	k: 1521	n:350000
Cons ci ratio: 9.157104e-02	ci left: 4.969982e-03	ci right 5.449695e-03	k: 1822	n:350000
KS ci ratio: 4.420478e-02	ci left: 2.148832e-02	ci right 2.246248e-02	k: 7690	n:350000
OR6A2   350000 perm   114 sec   (3067 perm/sec)   p_kst 2.197143e-02   p_cons 5.205714e-03   p_joint 4.345714e-03

Joint ci ratio: 9.893755e-02	ci left: 4.126793e-03	ci right 4.559023e-03	k: 1562	n:360000
Cons ci ratio: 9.038931e-02	ci left: 4.962225e-03	ci right 5.434682e-03	k: 1870	n:360000
KS ci ratio: 4.361397e-02	ci left: 2.146834e-02	ci right 2.242826e-02	k: 7900	n:360000
OR6A2   360000 perm   119 sec   (3034 perm/sec)   p_kst 2.194444e-02   p_cons 5.194444e-03   p_joint 4.338889e-03

Outputting figure to mutsig2_images.part000000000123/OR6A2.2_988_360000_0.021944_0.0051944_0.0043389.png
                gene_name: OR6A2
               theta_stop: 0.099 
                    nperm: 360000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.0052 
      ci_cons_bounds_left: 0.0050 
     ci_cons_bounds_right: 0.0054 
                  p_joint: 0.0043 
     ci_joint_bounds_left: 0.0041 
    ci_joint_bounds_right: 0.0046 

Current progress: 86 percent done.
OR6C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.980869e-02	ci left: 7.885747e-01	ci right 8.044522e-01	k: 7966	n:10000
Cons ci ratio: 2.524022e-02	ci left: 6.978692e-01	ci right 7.158101e-01	k: 7069	n:10000
KS ci ratio: 7.494614e-02	ci left: 2.066861e-01	ci right 2.228804e-01	k: 2147	n:10000
OR6C2   10000 perm   2 sec   (6404 perm/sec)   p_kst 2.147000e-01   p_cons 7.069000e-01   p_joint 7.966000e-01

Outputting figure to mutsig2_images.part000000000123/OR6C2.2_943_10000_0.2147_0.7069_0.7966.png
                gene_name: OR6C2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 87 percent done.
OR6C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.122226e-02	ci left: 6.021669e-01	ci right 6.213680e-01	k: 6118	n:10000
Cons ci ratio: 1.341604e-02	ci left: 8.890312e-01	ci right 9.011376e-01	k: 8952	n:10000
KS ci ratio: 1.000817e-01	ci left: 1.263042e-01	ci right 1.397104e-01	k: 1329	n:10000
OR6C3   10000 perm   2 sec   (6481 perm/sec)   p_kst 1.329000e-01   p_cons 8.952000e-01   p_joint 6.118000e-01

Joint ci ratio: 2.004487e-02	ci left: 6.499717e-01	ci right 6.631827e-01	k: 13132	n:20000
Cons ci ratio: 9.312563e-03	ci left: 8.943334e-01	ci right 9.027503e-01	k: 17972	n:20000
KS ci ratio: 6.975976e-02	ci left: 1.315730e-01	ci right 1.411330e-01	k: 2726	n:20000
OR6C3   20000 perm   4 sec   (5690 perm/sec)   p_kst 1.363000e-01   p_cons 8.986000e-01   p_joint 6.566000e-01

Outputting figure to mutsig2_images.part000000000123/OR6C3.2_940_20000_0.1363_0.8986_0.6566.png
                gene_name: OR6C3
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 88 percent done.
OR6C4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.728889e-02	ci left: 5.150563e-01	ci right 5.347292e-01	k: 5249	n:10000
Cons ci ratio: 4.475820e-02	ci left: 4.242563e-01	ci right 4.437821e-01	k: 4340	n:10000
KS ci ratio: 9.215698e-03	ci left: 9.431544e-01	ci right 9.519826e-01	k: 9477	n:10000
OR6C4   10000 perm   2 sec   (6473 perm/sec)   p_kst 9.477000e-01   p_cons 4.340000e-01   p_joint 5.249000e-01

Outputting figure to mutsig2_images.part000000000123/OR6C4.2_934_10000_0.9477_0.434_0.5249.png
                gene_name: OR6C4
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 90 percent done.
OR6C68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.852255e-02	ci left: 8.097874e-01	ci right 8.250272e-01	k: 8175	n:10000
KS ci ratio: 3.385608e-02	ci left: 5.629343e-01	ci right 5.824233e-01	k: 5727	n:10000
OR6C68   10000 perm   2 sec   (5914 perm/sec)   p_kst 5.727000e-01   p_cons 8.175000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR6C68.2_958_10000_0.5727_0.8175_1.png
                gene_name: OR6C68
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
OR6C74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.089014e-01	ci left: 1.084196e-01	ci right 1.210058e-01	k: 1146	n:10000
Cons ci ratio: 1.730584e-01	ci left: 4.456333e-02	ci right 5.310195e-02	k: 487	n:10000
KS ci ratio: 1.676522e-02	ci left: 8.381638e-01	ci right 8.524344e-01	k: 8454	n:10000
OR6C74   10000 perm   2 sec   (6648 perm/sec)   p_kst 8.454000e-01   p_cons 4.870000e-02   p_joint 1.146000e-01

Joint ci ratio: 8.752461e-02	ci left: 8.714669e-02	ci right 9.517263e-02	k: 1822	n:20000
Cons ci ratio: 1.223076e-01	ci left: 4.585485e-02	ci right 5.187718e-02	k: 976	n:20000
KS ci ratio: 1.176332e-02	ci left: 8.423408e-01	ci right 8.523580e-01	k: 16948	n:20000
OR6C74   20000 perm   3 sec   (5827 perm/sec)   p_kst 8.474000e-01   p_cons 4.880000e-02   p_joint 9.110000e-02

Joint ci ratio: 7.101487e-02	ci left: 8.891637e-02	ci right 9.549619e-02	k: 2765	n:30000
Cons ci ratio: 9.966803e-02	ci left: 4.658437e-02	ci right 5.150343e-02	k: 1470	n:30000
KS ci ratio: 9.656447e-03	ci left: 8.418654e-01	ci right 8.500675e-01	k: 25380	n:30000
OR6C74   30000 perm   5 sec   (5522 perm/sec)   p_kst 8.460000e-01   p_cons 4.900000e-02   p_joint 9.216667e-02

Outputting figure to mutsig2_images.part000000000123/OR6C74.2_943_30000_0.846_0.049_0.092167.png
                gene_name: OR6C74
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.095 

Current progress: 93 percent done.
OR7A17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.429301e-02	ci left: 8.762316e-01	ci right 8.889446e-01	k: 8827	n:10000
KS ci ratio: 3.891299e-02	ci left: 4.937506e-01	ci right 5.134473e-01	k: 5036	n:10000
OR7A17   10000 perm   2 sec   (5573 perm/sec)   p_kst 5.036000e-01   p_cons 8.827000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000123/OR7A17.2_934_10000_0.5036_0.8827_1.png
                gene_name: OR7A17
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
OR7D4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.706816e-01	ci left: 4.580994e-02	ci right 5.445453e-02	k: 500	n:10000
Cons ci ratio: 2.284450e-01	ci left: 2.532660e-02	ci right 3.195180e-02	k: 285	n:10000
KS ci ratio: 6.758888e-02	ci left: 2.431184e-01	ci right 2.602265e-01	k: 2516	n:10000
OR7D4   10000 perm   2 sec   (6266 perm/sec)   p_kst 2.516000e-01   p_cons 2.850000e-02   p_joint 5.000000e-02

Joint ci ratio: 1.290471e-01	ci left: 4.124750e-02	ci right 4.698598e-02	k: 881	n:20000
Cons ci ratio: 1.613936e-01	ci left: 2.633371e-02	ci right 3.100466e-02	k: 572	n:20000
KS ci ratio: 4.788829e-02	ci left: 2.449032e-01	ci right 2.569693e-01	k: 5018	n:20000
OR7D4   20000 perm   4 sec   (5667 perm/sec)   p_kst 2.509000e-01   p_cons 2.860000e-02   p_joint 4.405000e-02

Joint ci ratio: 1.042188e-01	ci left: 4.268167e-02	ci right 4.740695e-02	k: 1350	n:30000
Cons ci ratio: 1.298848e-01	ci left: 2.754976e-02	ci right 3.140874e-02	k: 883	n:30000
KS ci ratio: 3.903670e-02	ci left: 2.466310e-01	ci right 2.564838e-01	k: 7546	n:30000
OR7D4   30000 perm   6 sec   (5424 perm/sec)   p_kst 2.515333e-01   p_cons 2.943333e-02   p_joint 4.500000e-02

Joint ci ratio: 1.259326e-01	ci left: 2.215878e-02	ci right 2.516092e-02	k: 945	n:40000
Cons ci ratio: 1.109260e-01	ci left: 2.859321e-02	ci right 3.197544e-02	k: 1210	n:40000
KS ci ratio: 3.375677e-02	ci left: 2.478504e-01	ci right 2.563857e-01	k: 10084	n:40000
OR7D4   40000 perm   8 sec   (5134 perm/sec)   p_kst 2.521000e-01   p_cons 3.025000e-02   p_joint 2.362500e-02

Joint ci ratio: 1.079386e-01	ci left: 2.431112e-02	ci right 2.710432e-02	k: 1284	n:50000
Cons ci ratio: 9.890424e-02	ci left: 2.895149e-02	ci right 3.198335e-02	k: 1522	n:50000
KS ci ratio: 3.026563e-02	ci left: 2.474030e-01	ci right 2.550259e-01	k: 12560	n:50000
OR7D4   50000 perm   10 sec   (4933 perm/sec)   p_kst 2.512000e-01   p_cons 3.044000e-02   p_joint 2.568000e-02

Joint ci ratio: 6.852689e-02	ci left: 4.994168e-02	ci right 5.350184e-02	k: 3102	n:60000
Cons ci ratio: 8.947220e-02	ci left: 2.961128e-02	ci right 3.240100e-02	k: 1859	n:60000
KS ci ratio: 2.759220e-02	ci left: 2.482312e-01	ci right 2.551929e-01	k: 15102	n:60000
OR7D4   60000 perm   12 sec   (4843 perm/sec)   p_kst 2.517000e-01   p_cons 3.098333e-02   p_joint 5.170000e-02

Outputting figure to mutsig2_images.part000000000123/OR7D4.2_943_60000_0.2517_0.030983_0.0517.png
                gene_name: OR7D4
               theta_stop: 0.089 
                    nperm: 60000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.054 

Current progress: 96 percent done.
OR8B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.694478e-02	ci left: 6.698493e-01	ci right 6.882463e-01	k: 6791	n:10000
Cons ci ratio: 5.698598e-02	ci left: 3.119521e-01	ci right 3.303522e-01	k: 3211	n:10000
KS ci ratio: 3.239796e-02	ci left: 5.843990e-01	ci right 6.037461e-01	k: 5941	n:10000
OR8B2   10000 perm   2 sec   (6034 perm/sec)   p_kst 5.941000e-01   p_cons 3.211000e-01   p_joint 6.791000e-01

Outputting figure to mutsig2_images.part000000000123/OR8B2.2_946_10000_0.5941_0.3211_0.6791.png
                gene_name: OR8B2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 97 percent done.
OR8B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.168419e-02	ci left: 5.951385e-01	ci right 6.144005e-01	k: 6048	n:10000
Cons ci ratio: 1.402963e-02	ci left: 8.801201e-01	ci right 8.926539e-01	k: 8865	n:10000
KS ci ratio: 1.120715e-01	ci left: 1.028590e-01	ci right 1.151698e-01	k: 1089	n:10000
OR8B3   10000 perm   2 sec   (6494 perm/sec)   p_kst 1.089000e-01   p_cons 8.865000e-01   p_joint 6.048000e-01

Joint ci ratio: 2.424841e-02	ci left: 5.595477e-01	ci right 5.733330e-01	k: 11329	n:20000
Cons ci ratio: 9.733555e-03	ci left: 8.858361e-01	ci right 8.945501e-01	k: 17805	n:20000
KS ci ratio: 7.943217e-02	ci left: 1.042218e-01	ci right 1.128924e-01	k: 2170	n:20000
OR8B3   20000 perm   4 sec   (5526 perm/sec)   p_kst 1.085000e-01   p_cons 8.902500e-01   p_joint 5.664500e-01

Outputting figure to mutsig2_images.part000000000123/OR8B3.2_946_20000_0.1085_0.89025_0.56645.png
                gene_name: OR8B3
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 99 percent done.
OR8H3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.155724e-02	ci left: 7.593970e-01	ci right 7.760468e-01	k: 7678	n:10000
Cons ci ratio: 4.658079e-02	ci left: 4.048206e-01	ci right 4.242292e-01	k: 4145	n:10000
KS ci ratio: 3.109098e-02	ci left: 6.041754e-01	ci right 6.233583e-01	k: 6138	n:10000
OR8H3   10000 perm   2 sec   (5104 perm/sec)   p_kst 6.138000e-01   p_cons 4.145000e-01   p_joint 7.678000e-01

Outputting figure to mutsig2_images.part000000000123/OR8H3.2_943_10000_0.6138_0.4145_0.7678.png
                gene_name: OR8H3
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000123
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 123 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1713>
Subject: Job 9894063: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1713>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000124> was used as the working directory.
Started at Sat Oct  6 00:22:25 2012
Results reported at Sat Oct  6 03:31:16 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000124.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000124.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 124  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000124.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11394.93 sec.
    Max Memory :      6379 MB
    Max Swap   :      8855 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
124
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 124
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 124: processing genes 11089 - 11179
Calculating significance of each gene.
Using projection method.
11089	OR8I2	4.158962e-02
11090	OR8J1	1.018069e-02
11091	OR8J3	4.446972e-01
11092	OR8K1	2.077581e-03
11093	OR8K3	9.460836e-02
11094	OR8K5	2.067297e-01
11095	OR8S1	6.640134e-01
11096	OR8U1	1
11097	OR8U8	1
11098	OR9A2	7.992685e-01
11099	OR9A4	7.592257e-02
11100	OR9G1	1
11101	OR9G4	3.831480e-01
11102	OR9G9	1
11103	OR9I1	6.564713e-01
11104	OR9K2	2.254545e-01
11105	OR9Q1	1
11106	OR9Q2	3.440250e-01
11107	ORAI1	6.161239e-01
11108	ORAI2	1
11109	ORAI3	4.428978e-01
11110	ORAOV1	2.170935e-01
11111	ORC1L	9.448607e-01
11112	ORC2L	1
11113	ORC3L	8.938846e-01
11114	ORC4L	6.813581e-01
11115	ORC5L	6.801168e-01
11116	ORC6L	1
11117	ORM1	4.727475e-01
11118	ORM2	1
11119	ORMDL1	1
11120	ORMDL2	1
11121	ORMDL3	1
11122	OS9	6.549392e-01
11123	OSBP	4.548631e-01
11124	OSBP2	1
11125	OSBPL10	7.731412e-01
11126	OSBPL11	9.795417e-02
11127	OSBPL1A	9.201499e-01
11128	OSBPL2	9.602657e-01
11129	OSBPL3	8.644314e-02
11130	OSBPL5	6.243765e-01
11131	OSBPL6	1.897036e-03
11132	OSBPL7	8.344203e-01
11133	OSBPL8	7.867234e-01
11134	OSBPL9	9.753528e-01
11135	OSCAR	1
11136	OSCP1	5.511988e-01
11137	OSGEP	7.321813e-01
11138	OSGEPL1	6.807589e-01
11139	OSGIN1	8.940274e-01
11140	OSGIN2	5.215200e-01
11141	OSM	6.893303e-01
In gene OSMR the following bins exceed PROBCAP:
    READ-AG-A01L	categ 6	N = 3018    n = 1	mu =   3.23e-07
11142	OSMR	6.642440e-02
11143	OSR1	1
11144	OSR2	1
11145	OSTBETA	1
11146	OSTC	5.325314e-01
11147	OSTF1	1
11148	OSTM1	1
11149	OSTN	2.192391e-02
11150	OSTalpha	1.305118e-01
11151	OTC	3.039663e-02
11152	OTOA	2.568619e-01
11153	OTOF	5.302397e-01
11154	OTOL1	1.194632e-04
11155	OTOP1	9.013910e-01
11156	OTOP2	7.943052e-01
11157	OTOP3	7.959755e-01
11158	OTOR	1
11159	OTOS	4.063088e-01
In gene OTP the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 654     n = 1	mu =   8.55e-07
11160	OTP	1.235181e-01
11161	OTUB1	6.359882e-01
11162	OTUB2	7.268854e-01
11163	OTUD3	2.406719e-01
11164	OTUD4	3.641254e-01
11165	OTUD5	5.973457e-01
11166	OTUD6A	4.591425e-01
11167	OTUD6B	7.126568e-02
11168	OTUD7A	9.707074e-01
11169	OTUD7B	2.460605e-01
11170	OTX1	1.774533e-01
11171	OTX2	1.040051e-01
11172	OVCA2	5.117942e-02
11173	OVCH1	1.268661e-01
11174	OVCH2	9.345651e-01
11175	OVGP1	5.956569e-01
11176	OVOL1	1
11177	OVOL2	7.001923e-01
11178	OXA1L	4.958035e-01
11179	OXCT1	3.901002e-01
Done

Running MutSig 2:
Scatter job 124: processing genes 11089 - 11179
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
OVCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.888769e-02	ci left: 8.037956e-01	ci right 8.192225e-01	k: 8116	n:10000
Cons ci ratio: 3.906111e-02	ci left: 4.918509e-01	ci right 5.115481e-01	k: 5017	n:10000
KS ci ratio: 3.149235e-02	ci left: 5.980500e-01	ci right 6.172873e-01	k: 6077	n:10000
OVCH1   10000 perm   2 sec   (4570 perm/sec)   p_kst 6.077000e-01   p_cons 5.017000e-01   p_joint 8.116000e-01

Outputting figure to mutsig2_images.part000000000124/OVCH1.13_3517_10000_0.6077_0.5017_0.8116.png
                gene_name: OVCH1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 2 percent done.
OSBPL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.237972e-02	ci left: 4.511926e-01	ci right 4.708301e-01	k: 4610	n:10000
Cons ci ratio: 8.375026e-02	ci left: 1.721207e-01	ci right 1.872663e-01	k: 1796	n:10000
KS ci ratio: 3.777008e-02	ci left: 5.086527e-01	ci right 5.283365e-01	k: 5185	n:10000
OSBPL6   10000 perm   2 sec   (4695 perm/sec)   p_kst 5.185000e-01   p_cons 1.796000e-01   p_joint 4.610000e-01

Outputting figure to mutsig2_images.part000000000124/OSBPL6.11_3019_10000_0.5185_0.1796_0.461.png
                gene_name: OSBPL6
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 4 percent done.
OTOF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.617064e-02	ci left: 4.091051e-01	ci right 4.285422e-01	k: 4188	n:10000
Cons ci ratio: 5.103114e-02	ci left: 3.615207e-01	ci right 3.805545e-01	k: 3710	n:10000
KS ci ratio: 4.496832e-02	ci left: 4.219631e-01	ci right 4.414767e-01	k: 4317	n:10000
OTOF   10000 perm   3 sec   (3786 perm/sec)   p_kst 4.317000e-01   p_cons 3.710000e-01   p_joint 4.188000e-01

Outputting figure to mutsig2_images.part000000000124/OTOF.9_6507_10000_0.4317_0.371_0.4188.png
                gene_name: OTOF
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 6 percent done.
OSBPL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.979688e-02	ci left: 3.729600e-01	ci right 3.921085e-01	k: 3825	n:10000
Cons ci ratio: 1.435501e-02	ci left: 8.753109e-01	ci right 8.880658e-01	k: 8818	n:10000
KS ci ratio: 7.728861e-02	ci left: 1.966317e-01	ci right 2.125408e-01	k: 2045	n:10000
OSBPL3   10000 perm   2 sec   (4717 perm/sec)   p_kst 2.045000e-01   p_cons 8.818000e-01   p_joint 3.825000e-01

Outputting figure to mutsig2_images.part000000000124/OSBPL3.8_2752_10000_0.2045_0.8818_0.3825.png
                gene_name: OSBPL3
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 8 percent done.
OTOL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.391782e-02	ci left: 7.198696e-01	ci right 7.373970e-01	k: 7287	n:10000
Cons ci ratio: 5.736711e-02	ci left: 3.090749e-01	ci right 3.274310e-01	k: 3182	n:10000
KS ci ratio: 2.226371e-02	ci left: 7.475594e-01	ci right 7.644912e-01	k: 7561	n:10000
OTOL1   10000 perm   2 sec   (5327 perm/sec)   p_kst 7.561000e-01   p_cons 3.182000e-01   p_joint 7.287000e-01

Outputting figure to mutsig2_images.part000000000124/OTOL1.8_1450_10000_0.7561_0.3182_0.7287.png
                gene_name: OTOL1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 10 percent done.
OSBPL11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.444083e-02	ci left: 4.277464e-01	ci right 4.472900e-01	k: 4375	n:10000
Cons ci ratio: 6.170998e-02	ci left: 2.785431e-01	ci right 2.963808e-01	k: 2874	n:10000
KS ci ratio: 4.851453e-02	ci left: 3.853009e-01	ci right 4.045604e-01	k: 3949	n:10000
OSBPL11   10000 perm   2 sec   (5143 perm/sec)   p_kst 3.949000e-01   p_cons 2.874000e-01   p_joint 4.375000e-01

Outputting figure to mutsig2_images.part000000000124/OSBPL11.7_2296_10000_0.3949_0.2874_0.4375.png
                gene_name: OSBPL11
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 12 percent done.
OTOA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.428683e-02	ci left: 5.567190e-01	ci right 5.762422e-01	k: 5665	n:10000
Cons ci ratio: 8.447514e-03	ci left: 9.514824e-01	ci right 9.596496e-01	k: 9557	n:10000
KS ci ratio: 4.962867e-02	ci left: 3.745520e-01	ci right 3.937155e-01	k: 3841	n:10000
OTOA   10000 perm   2 sec   (4694 perm/sec)   p_kst 3.841000e-01   p_cons 9.557000e-01   p_joint 5.665000e-01

Outputting figure to mutsig2_images.part000000000124/OTOA.7_3578_10000_0.3841_0.9557_0.5665.png
                gene_name: OTOA
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 14 percent done.
OTUD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.528286e-02	ci left: 6.971632e-01	ci right 7.151166e-01	k: 7062	n:10000
Cons ci ratio: 3.939842e-02	ci left: 4.875523e-01	ci right 5.072492e-01	k: 4974	n:10000
KS ci ratio: 2.421431e-02	ci left: 7.149223e-01	ci right 7.325471e-01	k: 7238	n:10000
OTUD4   10000 perm   2 sec   (4935 perm/sec)   p_kst 7.238000e-01   p_cons 4.974000e-01   p_joint 7.062000e-01

Outputting figure to mutsig2_images.part000000000124/OTUD4.7_3234_10000_0.7238_0.4974_0.7062.png
                gene_name: OTUD4
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 16 percent done.
OR8J1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.966875e-01	ci left: 3.443296e-02	ci right 4.203907e-02	k: 381	n:10000
Cons ci ratio: 3.134257e-01	ci left: 1.298624e-02	ci right 1.790194e-02	k: 153	n:10000
KS ci ratio: 7.148093e-02	ci left: 2.228673e-01	ci right 2.394896e-01	k: 2311	n:10000
OR8J1   10000 perm   2 sec   (5856 perm/sec)   p_kst 2.311000e-01   p_cons 1.530000e-02   p_joint 3.810000e-02

Joint ci ratio: 9.891973e-02	ci left: 6.918775e-02	ci right 7.643704e-02	k: 1455	n:20000
Cons ci ratio: 2.201831e-01	ci left: 1.388097e-02	ci right 1.736192e-02	k: 311	n:20000
KS ci ratio: 5.047417e-02	ci left: 2.258174e-01	ci right 2.375607e-01	k: 4633	n:20000
OR8J1   20000 perm   4 sec   (5226 perm/sec)   p_kst 2.316500e-01   p_cons 1.555000e-02   p_joint 7.275000e-02

Joint ci ratio: 1.103944e-01	ci left: 3.810255e-02	ci right 4.258702e-02	k: 1209	n:30000
Cons ci ratio: 1.807637e-01	ci left: 1.403701e-02	ci right 1.685797e-02	k: 462	n:30000
KS ci ratio: 4.216035e-02	ci left: 2.189616e-01	ci right 2.284253e-01	k: 6710	n:30000
OR8J1   30000 perm   6 sec   (4975 perm/sec)   p_kst 2.236667e-01   p_cons 1.540000e-02   p_joint 4.030000e-02

Joint ci ratio: 9.639606e-02	ci left: 3.778311e-02	ci right 4.163408e-02	k: 1587	n:40000
Cons ci ratio: 1.576307e-01	ci left: 1.402381e-02	ci right 1.644731e-02	k: 608	n:40000
KS ci ratio: 3.557840e-02	ci left: 2.286655e-01	ci right 2.369734e-01	k: 9312	n:40000
OR8J1   40000 perm   8 sec   (4797 perm/sec)   p_kst 2.328000e-01   p_cons 1.520000e-02   p_joint 3.967500e-02

Joint ci ratio: 8.474102e-02	ci left: 3.929823e-02	ci right 4.279531e-02	k: 2051	n:50000
Cons ci ratio: 1.396222e-01	ci left: 1.443543e-02	ci right 1.662135e-02	k: 775	n:50000
KS ci ratio: 3.193541e-02	ci left: 2.278483e-01	ci right 2.352628e-01	k: 11577	n:50000
OR8J1   50000 perm   11 sec   (4645 perm/sec)   p_kst 2.315400e-01   p_cons 1.550000e-02   p_joint 4.102000e-02

Joint ci ratio: 8.929893e-02	ci left: 2.972542e-02	ci right 3.252018e-02	k: 1866	n:60000
Cons ci ratio: 1.277502e-01	ci left: 1.446215e-02	ci right 1.645178e-02	k: 926	n:60000
KS ci ratio: 3.002094e-02	ci left: 2.179504e-01	ci right 2.246099e-01	k: 13276	n:60000
OR8J1   60000 perm   13 sec   (4561 perm/sec)   p_kst 2.212667e-01   p_cons 1.543333e-02   p_joint 3.110000e-02

Joint ci ratio: 9.266242e-02	ci left: 2.377223e-02	ci right 2.609595e-02	k: 1744	n:70000
Cons ci ratio: 1.193146e-01	ci left: 1.427892e-02	ci right 1.610445e-02	k: 1062	n:70000
KS ci ratio: 2.777539e-02	ci left: 2.184282e-01	ci right 2.245949e-01	k: 15505	n:70000
OR8J1   70000 perm   16 sec   (4484 perm/sec)   p_kst 2.215000e-01   p_cons 1.517143e-02   p_joint 2.491429e-02

Joint ci ratio: 8.126578e-02	ci left: 2.711276e-02	ci right 2.942162e-02	k: 2260	n:80000
Cons ci ratio: 1.109547e-01	ci left: 1.450944e-02	ci right 1.622597e-02	k: 1228	n:80000
KS ci ratio: 2.596282e-02	ci left: 2.188752e-01	ci right 2.246450e-01	k: 17740	n:80000
OR8J1   80000 perm   18 sec   (4410 perm/sec)   p_kst 2.217500e-01   p_cons 1.535000e-02   p_joint 2.825000e-02

Joint ci ratio: 7.112970e-02	ci left: 3.148207e-02	ci right 3.381484e-02	k: 2937	n:90000
Cons ci ratio: 1.049421e-01	ci left: 1.446489e-02	ci right 1.607768e-02	k: 1373	n:90000
KS ci ratio: 2.452586e-02	ci left: 2.183701e-01	ci right 2.238034e-01	k: 19897	n:90000
OR8J1   90000 perm   21 sec   (4329 perm/sec)   p_kst 2.210778e-01   p_cons 1.525556e-02   p_joint 3.263333e-02

Joint ci ratio: 6.963027e-02	ci left: 2.964929e-02	ci right 3.179804e-02	k: 3071	n:100000
Cons ci ratio: 9.991190e-02	ci left: 1.440201e-02	ci right 1.592630e-02	k: 1515	n:100000
KS ci ratio: 2.322742e-02	ci left: 2.190987e-01	ci right 2.242575e-01	k: 22167	n:100000
OR8J1   100000 perm   24 sec   (4247 perm/sec)   p_kst 2.216700e-01   p_cons 1.515000e-02   p_joint 3.071000e-02

Outputting figure to mutsig2_images.part000000000124/OR8J1.6_955_100000_0.22167_0.01515_0.03071.png
                gene_name: OR8J1
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 18 percent done.
OR8K1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.248719e-01	ci left: 8.407230e-02	ci right 9.536803e-02	k: 896	n:10000
Cons ci ratio: 3.510363e-02	ci left: 5.450946e-01	ci right 5.646734e-01	k: 5549	n:10000
KS ci ratio: 1.572531e-01	ci left: 5.388306e-02	ci right 6.317620e-02	k: 584	n:10000
OR8K1   10000 perm   2 sec   (5748 perm/sec)   p_kst 5.840000e-02   p_cons 5.549000e-01   p_joint 8.960000e-02

Joint ci ratio: 7.498993e-02	ci left: 1.156744e-01	ci right 1.247364e-01	k: 2403	n:20000
Cons ci ratio: 2.473328e-02	ci left: 5.497824e-01	ci right 5.636012e-01	k: 11134	n:20000
KS ci ratio: 1.100528e-01	ci left: 5.635816e-02	ci right 6.297058e-02	k: 1192	n:20000
OR8K1   20000 perm   4 sec   (5175 perm/sec)   p_kst 5.960000e-02   p_cons 5.567000e-01   p_joint 1.201500e-01

Joint ci ratio: 5.537412e-02	ci left: 1.391555e-01	ci right 1.471137e-01	k: 4293	n:30000
Cons ci ratio: 2.015555e-02	ci left: 5.520245e-01	ci right 5.632977e-01	k: 16730	n:30000
KS ci ratio: 8.840946e-02	ci left: 5.877467e-02	ci right 6.424396e-02	k: 1844	n:30000
OR8K1   30000 perm   6 sec   (4915 perm/sec)   p_kst 6.146667e-02   p_cons 5.576667e-01   p_joint 1.431000e-01

Outputting figure to mutsig2_images.part000000000124/OR8K1.6_964_30000_0.061467_0.55767_0.1431.png
                gene_name: OR8K1
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 20 percent done.
OSMR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.386771e-02	ci left: 4.341296e-01	ci right 4.537031e-01	k: 4439	n:10000
Cons ci ratio: 3.487684e-02	ci left: 5.483008e-01	ci right 5.678653e-01	k: 5581	n:10000
KS ci ratio: 6.696667e-02	ci left: 2.465785e-01	ci right 2.637644e-01	k: 2551	n:10000
OSMR   10000 perm   2 sec   (4857 perm/sec)   p_kst 2.551000e-01   p_cons 5.581000e-01   p_joint 4.439000e-01

Outputting figure to mutsig2_images.part000000000124/OSMR.6_3046_10000_0.2551_0.5581_0.4439.png
                gene_name: OSMR
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 22 percent done.
OR9A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.702089e-02	ci left: 8.340910e-01	ci right 8.485096e-01	k: 8414	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
OR9A4   10000 perm   2 sec   (5787 perm/sec)   p_kst 1   p_cons 8.414000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/OR9A4.5_949_10000_1_0.8414_1.png
                gene_name: OR9A4
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
OTC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.210993e-02	ci left: 2.198072e-01	ci right 2.363514e-01	k: 2280	n:10000
Cons ci ratio: 5.657045e-02	ci left: 3.151274e-01	ci right 3.335750e-01	k: 3243	n:10000
KS ci ratio: 1.124191e-01	ci left: 1.022739e-01	ci right 1.145552e-01	k: 1083	n:10000
OTC   10000 perm   2 sec   (5912 perm/sec)   p_kst 1.083000e-01   p_cons 3.243000e-01   p_joint 2.280000e-01

Joint ci ratio: 6.355757e-02	ci left: 1.546971e-01	ci right 1.649020e-01	k: 3195	n:20000
Cons ci ratio: 3.940225e-02	ci left: 3.244783e-01	ci right 3.375709e-01	k: 6620	n:20000
KS ci ratio: 8.164300e-02	ci left: 9.911488e-02	ci right 1.076008e-01	k: 2066	n:20000
OTC   20000 perm   4 sec   (5258 perm/sec)   p_kst 1.033000e-01   p_cons 3.310000e-01   p_joint 1.597500e-01

Outputting figure to mutsig2_images.part000000000124/OTC.5_1105_20000_0.1033_0.331_0.15975.png
                gene_name: OTC
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 26 percent done.
OTUD7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.369350e-02	ci left: 1.723174e-01	ci right 1.874696e-01	k: 1798	n:10000
Cons ci ratio: 1.683940e-01	ci left: 4.705735e-02	ci right 5.580631e-02	k: 513	n:10000
KS ci ratio: 4.555967e-02	ci left: 4.155831e-01	ci right 4.350604e-01	k: 4253	n:10000
OTUD7B   10000 perm   2 sec   (5045 perm/sec)   p_kst 4.253000e-01   p_cons 5.130000e-02   p_joint 1.798000e-01

Joint ci ratio: 6.657079e-02	ci left: 1.428092e-01	ci right 1.526934e-01	k: 2954	n:20000
Cons ci ratio: 1.138029e-01	ci left: 5.280458e-02	ci right 5.922527e-02	k: 1119	n:20000
KS ci ratio: 3.227454e-02	ci left: 4.175864e-01	ci right 4.313355e-01	k: 8489	n:20000
OTUD7B   20000 perm   4 sec   (4553 perm/sec)   p_kst 4.244500e-01   p_cons 5.595000e-02   p_joint 1.477000e-01

Joint ci ratio: 5.151799e-02	ci left: 1.575830e-01	ci right 1.659493e-01	k: 4852	n:30000
Cons ci ratio: 9.327380e-02	ci left: 5.300086e-02	ci right 5.821895e-02	k: 1667	n:30000
KS ci ratio: 2.644926e-02	ci left: 4.170679e-01	ci right 4.282804e-01	k: 12680	n:30000
OTUD7B   30000 perm   7 sec   (4366 perm/sec)   p_kst 4.226667e-01   p_cons 5.556667e-02   p_joint 1.617333e-01

Outputting figure to mutsig2_images.part000000000124/OTUD7B.5_2576_30000_0.42267_0.055567_0.16173.png
                gene_name: OTUD7B
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 28 percent done.
OSBPL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.367603e-02	ci left: 7.239092e-01	ci right 7.413551e-01	k: 7327	n:10000
Cons ci ratio: 4.133735e-02	ci left: 4.635730e-01	ci right 4.832425e-01	k: 4734	n:10000
KS ci ratio: 4.680217e-02	ci left: 4.025292e-01	ci right 4.219220e-01	k: 4122	n:10000
OSBPL5   10000 perm   2 sec   (5068 perm/sec)   p_kst 4.122000e-01   p_cons 4.734000e-01   p_joint 7.327000e-01

Outputting figure to mutsig2_images.part000000000124/OSBPL5.4_2724_10000_0.4122_0.4734_0.7327.png
                gene_name: OSBPL5
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 30 percent done.
OTUD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.339341e-02	ci left: 2.677498e-01	ci right 2.853805e-01	k: 2765	n:10000
Cons ci ratio: 1.974146e-02	ci left: 7.896903e-01	ci right 8.055359e-01	k: 7977	n:10000
KS ci ratio: 1.212673e-01	ci left: 8.883535e-02	ci right 1.004021e-01	k: 945	n:10000
OTUD3   10000 perm   2 sec   (5915 perm/sec)   p_kst 9.450000e-02   p_cons 7.977000e-01   p_joint 2.765000e-01

Joint ci ratio: 5.576779e-02	ci left: 1.925459e-01	ci right 2.036420e-01	k: 3961	n:20000
Cons ci ratio: 1.414479e-02	ci left: 7.877215e-01	ci right 7.989931e-01	k: 15868	n:20000
KS ci ratio: 8.945464e-02	ci left: 8.366805e-02	ci right 9.155233e-02	k: 1751	n:20000
OTUD3   20000 perm   4 sec   (5324 perm/sec)   p_kst 8.755000e-02   p_cons 7.934000e-01   p_joint 1.980500e-01

Outputting figure to mutsig2_images.part000000000124/OTUD3.4_1229_20000_0.08755_0.7934_0.19805.png
                gene_name: OTUD3
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 32 percent done.
OTUD6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.802429e-02	ci left: 8.179167e-01	ci right 8.328932e-01	k: 8255	n:10000
KS ci ratio: 2.872461e-02	ci left: 6.411625e-01	ci right 6.599498e-01	k: 6506	n:10000
OTUD6B   10000 perm   2 sec   (5821 perm/sec)   p_kst 6.506000e-01   p_cons 8.255000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/OTUD6B.4_1000_10000_0.6506_0.8255_1.png
                gene_name: OTUD6B
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
OTX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.708459e-02	ci left: 8.330730e-01	ci right 8.475282e-01	k: 8404	n:10000
Cons ci ratio: 6.458655e-02	ci left: 2.604260e-01	ci right 2.779087e-01	k: 2691	n:10000
KS ci ratio: 2.690152e-02	ci left: 6.705543e-01	ci right 6.889408e-01	k: 6798	n:10000
OTX1   10000 perm   2 sec   (5940 perm/sec)   p_kst 6.798000e-01   p_cons 2.691000e-01   p_joint 8.404000e-01

Outputting figure to mutsig2_images.part000000000124/OTX1.4_1077_10000_0.6798_0.2691_0.8404.png
                gene_name: OTX1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 36 percent done.
OTX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.120255e-02	ci left: 6.024681e-01	ci right 6.216665e-01	k: 6121	n:10000
Cons ci ratio: 6.293718e-02	ci left: 2.706208e-01	ci right 2.883078e-01	k: 2794	n:10000
KS ci ratio: 7.546088e-02	ci left: 2.044183e-01	ci right 2.205496e-01	k: 2124	n:10000
OTX2   10000 perm   2 sec   (5894 perm/sec)   p_kst 2.124000e-01   p_cons 2.794000e-01   p_joint 6.121000e-01

Outputting figure to mutsig2_images.part000000000124/OTX2.4_906_10000_0.2124_0.2794_0.6121.png
                gene_name: OTX2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 38 percent done.
OXA1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.519152e-02	ci left: 6.986761e-01	ci right 7.166028e-01	k: 7077	n:10000
Cons ci ratio: 3.815763e-02	ci left: 5.035510e-01	ci right 5.232412e-01	k: 5134	n:10000
KS ci ratio: 3.650398e-02	ci left: 5.256658e-01	ci right 5.453136e-01	k: 5355	n:10000
OXA1L   10000 perm   2 sec   (5654 perm/sec)   p_kst 5.355000e-01   p_cons 5.134000e-01   p_joint 7.077000e-01

Outputting figure to mutsig2_images.part000000000124/OXA1L.4_1528_10000_0.5355_0.5134_0.7077.png
                gene_name: OXA1L
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 40 percent done.
OR8I2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.485020e-02	ci left: 2.588428e-01	ci right 2.762928e-01	k: 2675	n:10000
Cons ci ratio: 6.183069e-02	ci left: 2.777507e-01	ci right 2.955737e-01	k: 2866	n:10000
KS ci ratio: 7.501285e-02	ci left: 2.063903e-01	ci right 2.225764e-01	k: 2144	n:10000
OR8I2   10000 perm   2 sec   (6328 perm/sec)   p_kst 2.144000e-01   p_cons 2.866000e-01   p_joint 2.675000e-01

Outputting figure to mutsig2_images.part000000000124/OR8I2.3_937_10000_0.2144_0.2866_0.2675.png
                gene_name: OR8I2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 42 percent done.
OR8K3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.388548e-02	ci left: 4.339301e-01	ci right 4.535027e-01	k: 4437	n:10000
Cons ci ratio: 1.271204e-02	ci left: 8.989819e-01	ci right 9.105811e-01	k: 9049	n:10000
KS ci ratio: 6.478410e-02	ci left: 2.592386e-01	ci right 2.766968e-01	k: 2679	n:10000
OR8K3   10000 perm   2 sec   (6383 perm/sec)   p_kst 2.679000e-01   p_cons 9.049000e-01   p_joint 4.437000e-01

Outputting figure to mutsig2_images.part000000000124/OR8K3.3_943_10000_0.2679_0.9049_0.4437.png
                gene_name: OR8K3
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 44 percent done.
OR9K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.418244e-02	ci left: 8.778686e-01	ci right 8.905067e-01	k: 8843	n:10000
KS ci ratio: 4.320754e-02	ci left: 4.416119e-01	ci right 4.612164e-01	k: 4514	n:10000
OR9K2   10000 perm   2 sec   (6261 perm/sec)   p_kst 4.514000e-01   p_cons 8.843000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/OR9K2.3_1012_10000_0.4514_0.8843_1.png
                gene_name: OR9K2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
OR9Q2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.167093e-02	ci left: 5.953393e-01	ci right 6.145996e-01	k: 6050	n:10000
Cons ci ratio: 6.213439e-02	ci left: 2.757699e-01	ci right 2.935557e-01	k: 2846	n:10000
KS ci ratio: 2.517326e-02	ci left: 6.989787e-01	ci right 7.169000e-01	k: 7080	n:10000
OR9Q2   10000 perm   2 sec   (6007 perm/sec)   p_kst 7.080000e-01   p_cons 2.846000e-01   p_joint 6.050000e-01

Outputting figure to mutsig2_images.part000000000124/OR9Q2.3_949_10000_0.708_0.2846_0.605.png
                gene_name: OR9Q2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 48 percent done.
OS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.450369e-02	ci left: 5.536120e-01	ci right 5.731511e-01	k: 5634	n:10000
Cons ci ratio: 5.056434e-02	ci left: 3.657973e-01	ci right 3.848754e-01	k: 3753	n:10000
KS ci ratio: 3.890521e-02	ci left: 4.938506e-01	ci right 5.135473e-01	k: 5037	n:10000
OS9   10000 perm   2 sec   (5837 perm/sec)   p_kst 5.037000e-01   p_cons 3.753000e-01   p_joint 5.634000e-01

Outputting figure to mutsig2_images.part000000000124/OS9.3_2064_10000_0.5037_0.3753_0.5634.png
                gene_name: OS9
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 50 percent done.
OSBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.100668e-02	ci left: 7.686102e-01	ci right 7.850283e-01	k: 7769	n:10000
Cons ci ratio: 4.561562e-02	ci left: 4.149851e-01	ci right 4.344588e-01	k: 4247	n:10000
KS ci ratio: 1.968030e-02	ci left: 7.907046e-01	ci right 8.065211e-01	k: 7987	n:10000
OSBP   10000 perm   2 sec   (5524 perm/sec)   p_kst 7.987000e-01   p_cons 4.247000e-01   p_joint 7.769000e-01

Outputting figure to mutsig2_images.part000000000124/OSBP.3_2480_10000_0.7987_0.4247_0.7769.png
                gene_name: OSBP
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 52 percent done.
OSBPL10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.831423e-02	ci left: 2.391649e-01	ci right 2.561823e-01	k: 2476	n:10000
Cons ci ratio: 4.934669e-02	ci left: 3.772388e-01	ci right 3.964272e-01	k: 3868	n:10000
KS ci ratio: 7.154130e-02	ci left: 2.225711e-01	ci right 2.391859e-01	k: 2308	n:10000
OSBPL10   10000 perm   2 sec   (6130 perm/sec)   p_kst 2.308000e-01   p_cons 3.868000e-01   p_joint 2.476000e-01

Outputting figure to mutsig2_images.part000000000124/OSBPL10.3_2343_10000_0.2308_0.3868_0.2476.png
                gene_name: OSBPL10
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 54 percent done.
OSBPL1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.120139e-01	ci left: 1.029565e-01	ci right 1.152723e-01	k: 1090	n:10000
Cons ci ratio: 5.214247e-02	ci left: 3.515781e-01	ci right 3.705029e-01	k: 3610	n:10000
KS ci ratio: 1.627940e-01	ci left: 5.032338e-02	ci right 5.933816e-02	k: 547	n:10000
OSBPL1A   10000 perm   2 sec   (5382 perm/sec)   p_kst 5.470000e-02   p_cons 3.610000e-01   p_joint 1.090000e-01

Joint ci ratio: 1.268801e-01	ci left: 4.265306e-02	ci right 4.847998e-02	k: 910	n:20000
Cons ci ratio: 3.730156e-02	ci left: 3.490617e-01	ci right 3.623803e-01	k: 7114	n:20000
KS ci ratio: 1.169324e-01	ci left: 5.008111e-02	ci right 5.634959e-02	k: 1063	n:20000
OSBPL1A   20000 perm   4 sec   (4831 perm/sec)   p_kst 5.315000e-02   p_cons 3.557000e-01   p_joint 4.550000e-02

Joint ci ratio: 8.411855e-02	ci left: 6.465365e-02	ci right 7.036379e-02	k: 2024	n:30000
Cons ci ratio: 3.051757e-02	ci left: 3.493835e-01	ci right 3.602446e-01	k: 10644	n:30000
KS ci ratio: 9.624228e-02	ci left: 4.987266e-02	ci right 5.494779e-02	k: 1571	n:30000
OSBPL1A   30000 perm   7 sec   (4614 perm/sec)   p_kst 5.236667e-02   p_cons 3.548000e-01   p_joint 6.746667e-02

Outputting figure to mutsig2_images.part000000000124/OSBPL1A.3_2961_30000_0.052367_0.3548_0.067467.png
                gene_name: OSBPL1A
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.070 

Current progress: 56 percent done.
OSBPL7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.915936e-02	ci left: 2.959840e-01	ci right 3.141297e-01	k: 3050	n:10000
Cons ci ratio: 5.403691e-02	ci left: 3.353812e-01	ci right 3.541093e-01	k: 3447	n:10000
KS ci ratio: 8.682941e-02	ci left: 1.618987e-01	ci right 1.766945e-01	k: 1692	n:10000
OSBPL7   10000 perm   2 sec   (5609 perm/sec)   p_kst 1.692000e-01   p_cons 3.447000e-01   p_joint 3.050000e-01

Outputting figure to mutsig2_images.part000000000124/OSBPL7.3_2617_10000_0.1692_0.3447_0.305.png
                gene_name: OSBPL7
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 58 percent done.
OSTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.016804e-01	ci left: 3.271977e-02	ci right 4.015343e-02	k: 363	n:10000
KS ci ratio: 6.862726e-02	ci left: 2.374850e-01	ci right 2.544633e-01	k: 2459	n:10000
OSTN   10000 perm   2 sec   (6623 perm/sec)   p_kst 2.459000e-01   p_cons 3.630000e-02   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 1.437437e-01	ci left: 3.326778e-02	ci right 3.846828e-02	k: 716	n:20000
KS ci ratio: 4.877705e-02	ci left: 2.381098e-01	ci right 2.500647e-01	k: 4881	n:20000
OSTN   20000 perm   3 sec   (5864 perm/sec)   p_kst 2.440500e-01   p_cons 3.580000e-02   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 1.178510e-01	ci left: 3.346692e-02	ci right 3.769031e-02	k: 1066	n:30000
KS ci ratio: 3.966876e-02	ci left: 2.406711e-01	ci right 2.504449e-01	k: 7366	n:30000
OSTN   30000 perm   5 sec   (5580 perm/sec)   p_kst 2.455333e-01   p_cons 3.553333e-02   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 1.009517e-01	ci left: 3.448831e-02	ci right 3.817940e-02	k: 1452	n:40000
KS ci ratio: 3.429790e-02	ci left: 2.419346e-01	ci right 2.504023e-01	k: 9846	n:40000
OSTN   40000 perm   7 sec   (5371 perm/sec)   p_kst 2.461500e-01   p_cons 3.630000e-02   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 8.938522e-02	ci left: 3.538196e-02	ci right 3.871207e-02	k: 1851	n:50000
KS ci ratio: 3.062707e-02	ci left: 2.429859e-01	ci right 2.505636e-01	k: 12338	n:50000
OSTN   50000 perm   10 sec   (5217 perm/sec)   p_kst 2.467600e-01   p_cons 3.702000e-02   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 8.120725e-02	ci left: 3.586319e-02	ci right 3.891510e-02	k: 2242	n:60000
KS ci ratio: 2.788582e-02	ci left: 2.442830e-01	ci right 2.512080e-01	k: 14864	n:60000
OSTN   60000 perm   12 sec   (5084 perm/sec)   p_kst 2.477333e-01   p_cons 3.736667e-02   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 7.438722e-02	ci left: 3.673596e-02	ci right 3.958821e-02	k: 2670	n:70000
KS ci ratio: 2.586336e-02	ci left: 2.438797e-01	ci right 2.502841e-01	k: 17295	n:70000
OSTN   70000 perm   14 sec   (4966 perm/sec)   p_kst 2.470714e-01   p_cons 3.814286e-02   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 6.949506e-02	ci left: 3.691915e-02	ci right 3.958947e-02	k: 3059	n:80000
KS ci ratio: 2.418716e-02	ci left: 2.441763e-01	ci right 2.501670e-01	k: 19773	n:80000
OSTN   80000 perm   16 sec   (4855 perm/sec)   p_kst 2.471625e-01   p_cons 3.823750e-02   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 6.560488e-02	ci left: 3.690239e-02	ci right 3.941638e-02	k: 3433	n:90000
KS ci ratio: 2.280371e-02	ci left: 2.443511e-01	ci right 2.499985e-01	k: 22245	n:90000
OSTN   90000 perm   19 sec   (4754 perm/sec)   p_kst 2.471667e-01   p_cons 3.814444e-02   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 6.211614e-02	ci left: 3.710905e-02	ci right 3.949783e-02	k: 3829	n:100000
KS ci ratio: 2.165781e-02	ci left: 2.440803e-01	ci right 2.494344e-01	k: 24675	n:100000
OSTN   100000 perm   21 sec   (4657 perm/sec)   p_kst 2.467500e-01   p_cons 3.829000e-02   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 5.899287e-02	ci left: 3.745130e-02	ci right 3.973674e-02	k: 4244	n:110000
KS ci ratio: 2.068361e-02	ci left: 2.436020e-01	ci right 2.487023e-01	k: 27076	n:110000
OSTN   110000 perm   24 sec   (4567 perm/sec)   p_kst 2.461455e-01   p_cons 3.858182e-02   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 5.626005e-02	ci left: 3.778833e-02	ci right 3.998403e-02	k: 4665	n:120000
KS ci ratio: 1.981174e-02	ci left: 2.435486e-01	ci right 2.484303e-01	k: 29518	n:120000
OSTN   120000 perm   27 sec   (4478 perm/sec)   p_kst 2.459833e-01   p_cons 3.887500e-02   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 5.409097e-02	ci left: 3.777945e-02	ci right 3.988734e-02	k: 5047	n:130000
KS ci ratio: 1.902659e-02	ci left: 2.437987e-01	ci right 2.484895e-01	k: 31998	n:130000
OSTN   130000 perm   30 sec   (4396 perm/sec)   p_kst 2.461385e-01   p_cons 3.882308e-02   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 5.245204e-02	ci left: 3.735710e-02	ci right 3.937636e-02	k: 5370	n:140000
KS ci ratio: 1.833217e-02	ci left: 2.439309e-01	ci right 2.484511e-01	k: 34466	n:140000
OSTN   140000 perm   33 sec   (4297 perm/sec)   p_kst 2.461857e-01   p_cons 3.835714e-02   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 5.059876e-02	ci left: 3.749901e-02	ci right 3.945222e-02	k: 5770	n:150000
KS ci ratio: 1.771690e-02	ci left: 2.438753e-01	ci right 2.482412e-01	k: 36908	n:150000
OSTN   150000 perm   36 sec   (4225 perm/sec)   p_kst 2.460533e-01   p_cons 3.846667e-02   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 4.897853e-02	ci left: 3.755015e-02	ci right 3.944162e-02	k: 6158	n:160000
KS ci ratio: 1.713227e-02	ci left: 2.444209e-01	ci right 2.486508e-01	k: 39445	n:160000
OSTN   160000 perm   39 sec   (4154 perm/sec)   p_kst 2.465313e-01   p_cons 3.848750e-02   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 4.741054e-02	ci left: 3.774154e-02	ci right 3.958012e-02	k: 6571	n:170000
KS ci ratio: 1.662822e-02	ci left: 2.443178e-01	ci right 2.484203e-01	k: 41882	n:170000
OSTN   170000 perm   42 sec   (4086 perm/sec)   p_kst 2.463647e-01   p_cons 3.865294e-02   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 4.608368e-02	ci left: 3.775318e-02	ci right 3.953949e-02	k: 6955	n:180000
KS ci ratio: 1.617369e-02	ci left: 2.440561e-01	ci right 2.480410e-01	k: 44288	n:180000
OSTN   180000 perm   45 sec   (4007 perm/sec)   p_kst 2.460444e-01   p_cons 3.863889e-02   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 4.489097e-02	ci left: 3.771739e-02	ci right 3.945462e-02	k: 7330	n:190000
KS ci ratio: 1.574331e-02	ci left: 2.440857e-01	ci right 2.479641e-01	k: 46744	n:190000
OSTN   190000 perm   48 sec   (3947 perm/sec)   p_kst 2.460211e-01   p_cons 3.857895e-02   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 4.377450e-02	ci left: 3.770551e-02	ci right 3.939790e-02	k: 7709	n:200000
KS ci ratio: 1.534350e-02	ci left: 2.441636e-01	ci right 2.479438e-01	k: 49210	n:200000
OSTN   200000 perm   51 sec   (3890 perm/sec)   p_kst 2.460500e-01   p_cons 3.854500e-02   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 4.272366e-02	ci left: 3.771880e-02	ci right 3.937015e-02	k: 8093	n:210000
KS ci ratio: 1.496384e-02	ci left: 2.444536e-01	ci right 2.481439e-01	k: 51722	n:210000
OSTN   210000 perm   55 sec   (3834 perm/sec)   p_kst 2.462952e-01   p_cons 3.853810e-02   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 4.180148e-02	ci left: 3.763234e-02	ci right 3.924349e-02	k: 8455	n:220000
KS ci ratio: 1.461926e-02	ci left: 2.445098e-01	ci right 2.481151e-01	k: 54188	n:220000
OSTN   220000 perm   58 sec   (3781 perm/sec)   p_kst 2.463091e-01   p_cons 3.843182e-02   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 4.084511e-02	ci left: 3.771734e-02	ci right 3.929431e-02	k: 8855	n:230000
KS ci ratio: 1.430247e-02	ci left: 2.444318e-01	ci right 2.479572e-01	k: 56624	n:230000
OSTN   230000 perm   62 sec   (3728 perm/sec)   p_kst 2.461913e-01   p_cons 3.850000e-02   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 3.999647e-02	ci left: 3.771311e-02	ci right 3.925639e-02	k: 9235	n:240000
KS ci ratio: 1.399991e-02	ci left: 2.445066e-01	ci right 2.479579e-01	k: 59095	n:240000
OSTN   240000 perm   65 sec   (3667 perm/sec)   p_kst 2.462292e-01   p_cons 3.847917e-02   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 3.924108e-02	ci left: 3.763029e-02	ci right 3.914044e-02	k: 9595	n:250000
KS ci ratio: 1.371104e-02	ci left: 2.447038e-01	ci right 2.480861e-01	k: 61598	n:250000
OSTN   250000 perm   69 sec   (3616 perm/sec)   p_kst 2.463920e-01   p_cons 3.838000e-02   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 3.844469e-02	ci left: 3.771033e-02	ci right 3.919229e-02	k: 9996	n:260000
KS ci ratio: 1.344631e-02	ci left: 2.446947e-01	ci right 2.480110e-01	k: 64051	n:260000
OSTN   260000 perm   73 sec   (3567 perm/sec)   p_kst 2.463500e-01   p_cons 3.844615e-02   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 3.772320e-02	ci left: 3.772967e-02	ci right 3.918396e-02	k: 10382	n:270000
KS ci ratio: 1.319450e-02	ci left: 2.447385e-01	ci right 2.479928e-01	k: 66518	n:270000
OSTN   270000 perm   77 sec   (3521 perm/sec)   p_kst 2.463630e-01   p_cons 3.845185e-02   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 3.701585e-02	ci left: 3.779743e-02	ci right 3.922643e-02	k: 10782	n:280000
KS ci ratio: 1.295882e-02	ci left: 2.447085e-01	ci right 2.479039e-01	k: 68965	n:280000
OSTN   280000 perm   81 sec   (3474 perm/sec)   p_kst 2.463036e-01   p_cons 3.850714e-02   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 3.639257e-02	ci left: 3.776846e-02	ci right 3.917182e-02	k: 11155	n:290000
KS ci ratio: 1.273640e-02	ci left: 2.446501e-01	ci right 2.477894e-01	k: 71403	n:290000
OSTN   290000 perm   85 sec   (3428 perm/sec)   p_kst 2.462172e-01   p_cons 3.846552e-02   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 3.574015e-02	ci left: 3.786388e-02	ci right 3.924505e-02	k: 11565	n:300000
KS ci ratio: 1.252302e-02	ci left: 2.446559e-01	ci right 2.477423e-01	k: 73859	n:300000
OSTN   300000 perm   89 sec   (3387 perm/sec)   p_kst 2.461967e-01   p_cons 3.855000e-02   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 3.515061e-02	ci left: 3.789259e-02	ci right 3.925154e-02	k: 11956	n:310000
KS ci ratio: 1.231960e-02	ci left: 2.446746e-01	ci right 2.477108e-01	k: 76319	n:310000
OSTN   310000 perm   93 sec   (3346 perm/sec)   p_kst 2.461903e-01   p_cons 3.856774e-02   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 3.461119e-02	ci left: 3.787319e-02	ci right 3.921019e-02	k: 12332	n:320000
KS ci ratio: 1.212955e-02	ci left: 2.445772e-01	ci right 2.475649e-01	k: 78742	n:320000
OSTN   320000 perm   97 sec   (3305 perm/sec)   p_kst 2.460688e-01   p_cons 3.853750e-02   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 3.410843e-02	ci left: 3.782807e-02	ci right 3.914369e-02	k: 12699	n:330000
KS ci ratio: 1.194511e-02	ci left: 2.445767e-01	ci right 2.475187e-01	k: 81195	n:330000
OSTN   330000 perm   101 sec   (3265 perm/sec)   p_kst 2.460455e-01   p_cons 3.848182e-02   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 3.361090e-02	ci left: 3.782074e-02	ci right 3.911655e-02	k: 13078	n:340000
KS ci ratio: 1.176874e-02	ci left: 2.445795e-01	ci right 2.474778e-01	k: 83649	n:340000
OSTN   340000 perm   105 sec   (3227 perm/sec)   p_kst 2.460265e-01   p_cons 3.846471e-02   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 3.308853e-02	ci left: 3.791600e-02	ci right 3.919451e-02	k: 13493	n:350000
KS ci ratio: 1.159585e-02	ci left: 2.447136e-01	ci right 2.475706e-01	k: 86149	n:350000
OSTN   350000 perm   110 sec   (3189 perm/sec)   p_kst 2.461400e-01   p_cons 3.855143e-02   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 3.260808e-02	ci left: 3.796478e-02	ci right 3.922599e-02	k: 13893	n:360000
KS ci ratio: 1.143413e-02	ci left: 2.447186e-01	ci right 2.475355e-01	k: 88605	n:360000
OSTN   360000 perm   114 sec   (3152 perm/sec)   p_kst 2.461250e-01   p_cons 3.859167e-02   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 3.213743e-02	ci left: 3.803518e-02	ci right 3.928016e-02	k: 14302	n:370000
KS ci ratio: 1.127472e-02	ci left: 2.448638e-01	ci right 2.476429e-01	k: 91113	n:370000
OSTN   370000 perm   119 sec   (3114 perm/sec)   p_kst 2.462514e-01   p_cons 3.865405e-02   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 3.173937e-02	ci left: 3.797926e-02	ci right 3.920673e-02	k: 14664	n:380000
KS ci ratio: 1.112676e-02	ci left: 2.448362e-01	ci right 2.475782e-01	k: 93558	n:380000
OSTN   380000 perm   124 sec   (3076 perm/sec)   p_kst 2.462053e-01   p_cons 3.858947e-02   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 3.133081e-02	ci left: 3.798483e-02	ci right 3.919639e-02	k: 15049	n:390000
KS ci ratio: 1.098312e-02	ci left: 2.448563e-01	ci right 2.475629e-01	k: 96021	n:390000
OSTN   390000 perm   128 sec   (3042 perm/sec)   p_kst 2.462077e-01   p_cons 3.858718e-02   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 3.095120e-02	ci left: 3.795796e-02	ci right 3.915373e-02	k: 15421	n:400000
KS ci ratio: 1.083956e-02	ci left: 2.450577e-01	ci right 2.477310e-01	k: 98557	n:400000
OSTN   400000 perm   133 sec   (3007 perm/sec)   p_kst 2.463925e-01   p_cons 3.855250e-02   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 3.060420e-02	ci left: 3.788649e-02	ci right 3.906639e-02	k: 15774	n:410000
KS ci ratio: 1.070431e-02	ci left: 2.451522e-01	ci right 2.477929e-01	k: 101053	n:410000
OSTN   410000 perm   138 sec   (2974 perm/sec)   p_kst 2.464707e-01   p_cons 3.847317e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 3.026374e-02	ci left: 3.783030e-02	ci right 3.899512e-02	k: 16132	n:420000
KS ci ratio: 1.057907e-02	ci left: 2.450641e-01	ci right 2.476728e-01	k: 103474	n:420000
OSTN   420000 perm   143 sec   (2941 perm/sec)   p_kst 2.463667e-01   p_cons 3.840952e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 2.990611e-02	ci left: 3.784607e-02	ci right 3.899737e-02	k: 16520	n:430000
KS ci ratio: 1.045302e-02	ci left: 2.451613e-01	ci right 2.477398e-01	k: 105973	n:430000
OSTN   430000 perm   148 sec   (2909 perm/sec)   p_kst 2.464488e-01   p_cons 3.841860e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 2.959821e-02	ci left: 3.776868e-02	ci right 3.890559e-02	k: 16867	n:440000
KS ci ratio: 1.033277e-02	ci left: 2.452044e-01	ci right 2.477535e-01	k: 108450	n:440000
OSTN   440000 perm   153 sec   (2878 perm/sec)   p_kst 2.464773e-01   p_cons 3.833409e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 2.928989e-02	ci left: 3.771906e-02	ci right 3.884245e-02	k: 17225	n:450000
KS ci ratio: 1.022066e-02	ci left: 2.450971e-01	ci right 2.476172e-01	k: 110860	n:450000
OSTN   450000 perm   158 sec   (2846 perm/sec)   p_kst 2.463556e-01   p_cons 3.827778e-02   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 2.899358e-02	ci left: 3.766518e-02	ci right 3.877543e-02	k: 17580	n:460000
KS ci ratio: 1.010686e-02	ci left: 2.451878e-01	ci right 2.476806e-01	k: 113359	n:460000
OSTN   460000 perm   163 sec   (2817 perm/sec)   p_kst 2.464326e-01   p_cons 3.821739e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 2.870691e-02	ci left: 3.761153e-02	ci right 3.870906e-02	k: 17934	n:470000
KS ci ratio: 1.000108e-02	ci left: 2.451155e-01	ci right 2.475813e-01	k: 115783	n:470000
OSTN   470000 perm   169 sec   (2787 perm/sec)   p_kst 2.463468e-01   p_cons 3.815745e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 2.839551e-02	ci left: 3.764501e-02	ci right 3.873141e-02	k: 18329	n:480000
KS ci ratio: 9.900878e-03	ci left: 2.449589e-01	ci right 2.473983e-01	k: 118165	n:480000
OSTN   480000 perm   174 sec   (2759 perm/sec)   p_kst 2.461771e-01   p_cons 3.818542e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 2.810885e-02	ci left: 3.763867e-02	ci right 3.871374e-02	k: 18705	n:490000
KS ci ratio: 9.796516e-03	ci left: 2.450778e-01	ci right 2.474925e-01	k: 120679	n:490000
OSTN   490000 perm   179 sec   (2730 perm/sec)   p_kst 2.462837e-01   p_cons 3.817347e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 2.783071e-02	ci left: 3.763263e-02	ci right 3.869673e-02	k: 19081	n:500000
KS ci ratio: 9.699720e-03	ci left: 2.450264e-01	ci right 2.474166e-01	k: 123110	n:500000
OSTN   500000 perm   185 sec   (2703 perm/sec)   p_kst 2.462200e-01   p_cons 3.816200e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 2.753419e-02	ci left: 3.769701e-02	ci right 3.875138e-02	k: 19493	n:510000
KS ci ratio: 9.604419e-03	ci left: 2.450279e-01	ci right 2.473946e-01	k: 125567	n:510000
OSTN   510000 perm   191 sec   (2674 perm/sec)   p_kst 2.462098e-01   p_cons 3.822157e-02   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 2.729832e-02	ci left: 3.762141e-02	ci right 3.866451e-02	k: 19833	n:520000
KS ci ratio: 9.510148e-03	ci left: 2.450968e-01	ci right 2.474407e-01	k: 128059	n:520000
OSTN   520000 perm   196 sec   (2647 perm/sec)   p_kst 2.462673e-01   p_cons 3.814038e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 2.703152e-02	ci left: 3.764805e-02	ci right 3.868153e-02	k: 20226	n:530000
KS ci ratio: 9.421520e-03	ci left: 2.450482e-01	ci right 2.473697e-01	k: 130490	n:530000
OSTN   530000 perm   203 sec   (2616 perm/sec)   p_kst 2.462075e-01   p_cons 3.816226e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 2.677104e-02	ci left: 3.767743e-02	ci right 3.870160e-02	k: 20621	n:540000
KS ci ratio: 9.335930e-03	ci left: 2.449775e-01	ci right 2.472771e-01	k: 132908	n:540000
OSTN   540000 perm   209 sec   (2590 perm/sec)   p_kst 2.461259e-01   p_cons 3.818704e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 2.651598e-02	ci left: 3.771121e-02	ci right 3.872639e-02	k: 21019	n:550000
KS ci ratio: 9.249775e-03	ci left: 2.450238e-01	ci right 2.473025e-01	k: 135389	n:550000
OSTN   550000 perm   214 sec   (2565 perm/sec)   p_kst 2.461618e-01   p_cons 3.821636e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 2.629105e-02	ci left: 3.767995e-02	ci right 3.868555e-02	k: 21381	n:560000
KS ci ratio: 9.167550e-03	ci left: 2.450044e-01	ci right 2.472625e-01	k: 137834	n:560000
OSTN   560000 perm   220 sec   (2540 perm/sec)   p_kst 2.461321e-01   p_cons 3.818036e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 2.606552e-02	ci left: 3.766725e-02	ci right 3.866376e-02	k: 21753	n:570000
KS ci ratio: 9.086706e-03	ci left: 2.450172e-01	ci right 2.472555e-01	k: 140297	n:570000
OSTN   570000 perm   227 sec   (2516 perm/sec)   p_kst 2.461351e-01   p_cons 3.816316e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 2.584024e-02	ci left: 3.767045e-02	ci right 3.865830e-02	k: 22134	n:580000
KS ci ratio: 9.008591e-03	ci left: 2.450039e-01	ci right 2.472227e-01	k: 142745	n:580000
OSTN   580000 perm   233 sec   (2493 perm/sec)   p_kst 2.461121e-01   p_cons 3.816207e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 2.561005e-02	ci left: 3.770390e-02	ci right 3.868369e-02	k: 22533	n:590000
KS ci ratio: 8.935722e-03	ci left: 2.448558e-01	ci right 2.470552e-01	k: 145113	n:590000
OSTN   590000 perm   239 sec   (2471 perm/sec)   p_kst 2.459542e-01   p_cons 3.819153e-02   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 2.539397e-02	ci left: 3.771308e-02	ci right 3.868472e-02	k: 22918	n:600000
KS ci ratio: 8.862640e-03	ci left: 2.447942e-01	ci right 2.469750e-01	k: 147530	n:600000
OSTN   600000 perm   245 sec   (2450 perm/sec)   p_kst 2.458833e-01   p_cons 3.819667e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 2.519114e-02	ci left: 3.769918e-02	ci right 3.866259e-02	k: 23289	n:610000
KS ci ratio: 8.787553e-03	ci left: 2.448934e-01	ci right 2.470565e-01	k: 150044	n:610000
OSTN   610000 perm   251 sec   (2430 perm/sec)   p_kst 2.459738e-01   p_cons 3.817869e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 2.496732e-02	ci left: 3.776111e-02	ci right 3.871741e-02	k: 23707	n:620000
KS ci ratio: 8.717752e-03	ci left: 2.448446e-01	ci right 2.469900e-01	k: 152468	n:620000
OSTN   620000 perm   257 sec   (2409 perm/sec)   p_kst 2.459161e-01   p_cons 3.823710e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 2.476698e-02	ci left: 3.776904e-02	ci right 3.871775e-02	k: 24092	n:630000
KS ci ratio: 8.650293e-03	ci left: 2.447673e-01	ci right 2.468954e-01	k: 154873	n:630000
OSTN   630000 perm   264 sec   (2389 perm/sec)   p_kst 2.458302e-01   p_cons 3.824127e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 2.456773e-02	ci left: 3.778762e-02	ci right 3.872906e-02	k: 24484	n:640000
KS ci ratio: 8.584846e-03	ci left: 2.446722e-01	ci right 2.467832e-01	k: 157265	n:640000
OSTN   640000 perm   270 sec   (2368 perm/sec)   p_kst 2.457266e-01   p_cons 3.825625e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 2.438494e-02	ci left: 3.777049e-02	ci right 3.870440e-02	k: 24853	n:650000
KS ci ratio: 8.518633e-03	ci left: 2.446768e-01	ci right 2.467716e-01	k: 159720	n:650000
OSTN   650000 perm   277 sec   (2344 perm/sec)   p_kst 2.457231e-01   p_cons 3.823538e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 2.419271e-02	ci left: 3.779457e-02	ci right 3.872161e-02	k: 25249	n:660000
KS ci ratio: 8.453169e-03	ci left: 2.447147e-01	ci right 2.467936e-01	k: 162197	n:660000
OSTN   660000 perm   284 sec   (2321 perm/sec)   p_kst 2.457530e-01   p_cons 3.825606e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 2.402054e-02	ci left: 3.777048e-02	ci right 3.869024e-02	k: 25613	n:670000
KS ci ratio: 8.389732e-03	ci left: 2.447277e-01	ci right 2.467910e-01	k: 164658	n:670000
OSTN   670000 perm   291 sec   (2302 perm/sec)   p_kst 2.457582e-01   p_cons 3.822836e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 2.384627e-02	ci left: 3.776466e-02	ci right 3.867752e-02	k: 25989	n:680000
KS ci ratio: 8.328858e-03	ci left: 2.446889e-01	ci right 2.467368e-01	k: 167084	n:680000
OSTN   680000 perm   298 sec   (2282 perm/sec)   p_kst 2.457118e-01   p_cons 3.821912e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 2.366221e-02	ci left: 3.780082e-02	ci right 3.870741e-02	k: 26394	n:690000
KS ci ratio: 8.266349e-03	ci left: 2.447830e-01	ci right 2.468163e-01	k: 169601	n:690000
OSTN   690000 perm   305 sec   (2263 perm/sec)   p_kst 2.457986e-01   p_cons 3.825217e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 2.349465e-02	ci left: 3.779763e-02	ci right 3.869763e-02	k: 26772	n:700000
KS ci ratio: 8.207281e-03	ci left: 2.447817e-01	ci right 2.468004e-01	k: 172053	n:700000
OSTN   700000 perm   312 sec   (2244 perm/sec)   p_kst 2.457900e-01   p_cons 3.824571e-02   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 2.331365e-02	ci left: 3.784776e-02	ci right 3.874192e-02	k: 27188	n:710000
KS ci ratio: 8.149771e-03	ci left: 2.447665e-01	ci right 2.467708e-01	k: 174495	n:710000
OSTN   710000 perm   319 sec   (2225 perm/sec)   p_kst 2.457676e-01   p_cons 3.829296e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 2.314985e-02	ci left: 3.785510e-02	ci right 3.874307e-02	k: 27574	n:720000
KS ci ratio: 8.093423e-03	ci left: 2.447531e-01	ci right 2.467434e-01	k: 176938	n:720000
OSTN   720000 perm   326 sec   (2206 perm/sec)   p_kst 2.457472e-01   p_cons 3.829722e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 2.299159e-02	ci left: 3.785544e-02	ci right 3.873727e-02	k: 27955	n:730000
KS ci ratio: 8.040278e-03	ci left: 2.446457e-01	ci right 2.466220e-01	k: 179312	n:730000
OSTN   730000 perm   334 sec   (2188 perm/sec)   p_kst 2.456329e-01   p_cons 3.829452e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 2.284282e-02	ci left: 3.783564e-02	ci right 3.871122e-02	k: 28321	n:740000
KS ci ratio: 7.985631e-03	ci left: 2.446587e-01	ci right 2.466216e-01	k: 181773	n:740000
OSTN   740000 perm   341 sec   (2170 perm/sec)   p_kst 2.456392e-01   p_cons 3.827162e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 2.268827e-02	ci left: 3.784423e-02	ci right 3.871401e-02	k: 28708	n:750000
KS ci ratio: 7.930657e-03	ci left: 2.447380e-01	ci right 2.466880e-01	k: 184284	n:750000
OSTN   750000 perm   348 sec   (2153 perm/sec)   p_kst 2.457120e-01   p_cons 3.827733e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 2.253641e-02	ci left: 3.785392e-02	ci right 3.871803e-02	k: 29096	n:760000
KS ci ratio: 7.879404e-03	ci left: 2.446930e-01	ci right 2.466300e-01	k: 186702	n:760000
OSTN   760000 perm   356 sec   (2136 perm/sec)   p_kst 2.456605e-01   p_cons 3.828421e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 2.238677e-02	ci left: 3.786596e-02	ci right 3.872453e-02	k: 29486	n:770000
KS ci ratio: 7.828582e-03	ci left: 2.446752e-01	ci right 2.465994e-01	k: 189140	n:770000
OSTN   770000 perm   363 sec   (2120 perm/sec)   p_kst 2.456364e-01   p_cons 3.829351e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 2.224511e-02	ci left: 3.786113e-02	ci right 3.871409e-02	k: 29863	n:780000
KS ci ratio: 7.777467e-03	ci left: 2.447180e-01	ci right 2.466300e-01	k: 191625	n:780000
OSTN   780000 perm   371 sec   (2104 perm/sec)   p_kst 2.456731e-01   p_cons 3.828590e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 2.210458e-02	ci left: 3.786148e-02	ci right 3.870899e-02	k: 30244	n:790000
KS ci ratio: 7.727842e-03	ci left: 2.447358e-01	ci right 2.466357e-01	k: 194091	n:790000
OSTN   790000 perm   378 sec   (2088 perm/sec)   p_kst 2.456848e-01   p_cons 3.828354e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 2.197004e-02	ci left: 3.785065e-02	ci right 3.869270e-02	k: 30616	n:800000
KS ci ratio: 7.679776e-03	ci left: 2.447232e-01	ci right 2.466111e-01	k: 196533	n:800000
OSTN   800000 perm   386 sec   (2072 perm/sec)   p_kst 2.456663e-01   p_cons 3.827000e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 2.183023e-02	ci left: 3.786589e-02	ci right 3.870285e-02	k: 31009	n:810000
KS ci ratio: 7.633104e-03	ci left: 2.446863e-01	ci right 2.465624e-01	k: 198955	n:810000
OSTN   810000 perm   394 sec   (2057 perm/sec)   p_kst 2.456235e-01   p_cons 3.828272e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 2.169235e-02	ci left: 3.788320e-02	ci right 3.871519e-02	k: 31404	n:820000
KS ci ratio: 7.588197e-03	ci left: 2.446053e-01	ci right 2.464697e-01	k: 201340	n:820000
OSTN   820000 perm   402 sec   (2042 perm/sec)   p_kst 2.455366e-01   p_cons 3.829756e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 2.155951e-02	ci left: 3.789172e-02	ci right 3.871873e-02	k: 31792	n:830000
KS ci ratio: 7.540983e-03	ci left: 2.446779e-01	ci right 2.465311e-01	k: 203851	n:830000
OSTN   830000 perm   409 sec   (2027 perm/sec)   p_kst 2.456036e-01   p_cons 3.830361e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 2.143323e-02	ci left: 3.788584e-02	ci right 3.870782e-02	k: 32168	n:840000
KS ci ratio: 7.497119e-03	ci left: 2.446263e-01	ci right 2.464683e-01	k: 206259	n:840000
OSTN   840000 perm   417 sec   (2013 perm/sec)   p_kst 2.455464e-01   p_cons 3.829524e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 2.130983e-02	ci left: 3.787777e-02	ci right 3.869479e-02	k: 32542	n:850000
KS ci ratio: 7.454627e-03	ci left: 2.445454e-01	ci right 2.463763e-01	k: 208641	n:850000
OSTN   850000 perm   425 sec   (1998 perm/sec)   p_kst 2.454600e-01   p_cons 3.828471e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 2.118653e-02	ci left: 3.787685e-02	ci right 3.868906e-02	k: 32922	n:860000
KS ci ratio: 7.410592e-03	ci left: 2.445791e-01	ci right 2.463994e-01	k: 211120	n:860000
OSTN   860000 perm   434 sec   (1983 perm/sec)   p_kst 2.454884e-01   p_cons 3.828140e-02   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 2.106009e-02	ci left: 3.789425e-02	ci right 3.870193e-02	k: 33318	n:870000
KS ci ratio: 7.368083e-03	ci left: 2.445741e-01	ci right 2.463839e-01	k: 213566	n:870000
OSTN   870000 perm   442 sec   (1969 perm/sec)   p_kst 2.454782e-01   p_cons 3.829655e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 2.094590e-02	ci left: 3.787623e-02	ci right 3.867909e-02	k: 33683	n:880000
KS ci ratio: 7.323758e-03	ci left: 2.446975e-01	ci right 2.464973e-01	k: 216125	n:880000
OSTN   880000 perm   450 sec   (1955 perm/sec)   p_kst 2.455966e-01   p_cons 3.827614e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 2.084245e-02	ci left: 3.782731e-02	ci right 3.862513e-02	k: 34020	n:890000
KS ci ratio: 7.283048e-03	ci left: 2.446746e-01	ci right 2.464642e-01	k: 218556	n:890000
OSTN   890000 perm   458 sec   (1942 perm/sec)   p_kst 2.455685e-01   p_cons 3.822472e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 2.072705e-02	ci left: 3.782704e-02	ci right 3.862038e-02	k: 34400	n:900000
KS ci ratio: 7.242098e-03	ci left: 2.446988e-01	ci right 2.464784e-01	k: 221029	n:900000
OSTN   900000 perm   467 sec   (1928 perm/sec)   p_kst 2.455878e-01   p_cons 3.822222e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 2.061169e-02	ci left: 3.783334e-02	ci right 3.862235e-02	k: 34786	n:910000
KS ci ratio: 7.202130e-03	ci left: 2.447071e-01	ci right 2.464769e-01	k: 223488	n:910000
OSTN   910000 perm   475 sec   (1914 perm/sec)   p_kst 2.455912e-01   p_cons 3.822637e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 2.050338e-02	ci left: 3.782113e-02	ci right 3.860569e-02	k: 35155	n:920000
KS ci ratio: 7.163678e-03	ci left: 2.446708e-01	ci right 2.464309e-01	k: 225906	n:920000
OSTN   920000 perm   484 sec   (1900 perm/sec)   p_kst 2.455500e-01   p_cons 3.821196e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 2.039528e-02	ci left: 3.781455e-02	ci right 3.859479e-02	k: 35529	n:930000
KS ci ratio: 7.124595e-03	ci left: 2.446997e-01	ci right 2.464503e-01	k: 228384	n:930000
OSTN   930000 perm   494 sec   (1883 perm/sec)   p_kst 2.455742e-01   p_cons 3.820323e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 2.029269e-02	ci left: 3.779435e-02	ci right 3.857020e-02	k: 35890	n:940000
KS ci ratio: 7.086632e-03	ci left: 2.447025e-01	ci right 2.464438e-01	k: 230838	n:940000
OSTN   940000 perm   502 sec   (1871 perm/sec)   p_kst 2.455723e-01   p_cons 3.818085e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 2.019307e-02	ci left: 3.776935e-02	ci right 3.854084e-02	k: 36246	n:950000
KS ci ratio: 7.048089e-03	ci left: 2.447673e-01	ci right 2.464995e-01	k: 233351	n:950000
OSTN   950000 perm   512 sec   (1856 perm/sec)   p_kst 2.456326e-01   p_cons 3.815368e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 2.008864e-02	ci left: 3.776768e-02	ci right 3.853511e-02	k: 36624	n:960000
KS ci ratio: 7.010601e-03	ci left: 2.448079e-01	ci right 2.465312e-01	k: 235842	n:960000
OSTN   960000 perm   521 sec   (1844 perm/sec)   p_kst 2.456687e-01   p_cons 3.815000e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 1.998777e-02	ci left: 3.775888e-02	ci right 3.852223e-02	k: 36995	n:970000
KS ci ratio: 6.973763e-03	ci left: 2.448446e-01	ci right 2.465590e-01	k: 238330	n:970000
OSTN   970000 perm   530 sec   (1831 perm/sec)   p_kst 2.457010e-01   p_cons 3.813918e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 1.987790e-02	ci left: 3.778886e-02	ci right 3.854857e-02	k: 37404	n:980000
KS ci ratio: 6.937232e-03	ci left: 2.448948e-01	ci right 2.466006e-01	k: 240832	n:980000
OSTN   980000 perm   539 sec   (1819 perm/sec)   p_kst 2.457469e-01   p_cons 3.816735e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 1.976928e-02	ci left: 3.782025e-02	ci right 3.857639e-02	k: 37815	n:990000
KS ci ratio: 6.902699e-03	ci left: 2.448674e-01	ci right 2.465644e-01	k: 243258	n:990000
OSTN   990000 perm   548 sec   (1807 perm/sec)   p_kst 2.457152e-01   p_cons 3.819697e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 1.966563e-02	ci left: 3.783909e-02	ci right 3.859159e-02	k: 38214	n:1000000
KS ci ratio: 6.868269e-03	ci left: 2.448625e-01	ci right 2.465510e-01	k: 245706	n:1000000
OSTN   1000000 perm   557 sec   (1795 perm/sec)   p_kst 2.457060e-01   p_cons 3.821400e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 1.956887e-02	ci left: 3.783785e-02	ci right 3.858658e-02	k: 38593	n:1010000
KS ci ratio: 6.833837e-03	ci left: 2.448854e-01	ci right 2.465656e-01	k: 248182	n:1010000
OSTN   1010000 perm   566 sec   (1783 perm/sec)   p_kst 2.457248e-01   p_cons 3.821089e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 1.947066e-02	ci left: 3.784738e-02	ci right 3.859250e-02	k: 38983	n:1020000
KS ci ratio: 6.800530e-03	ci left: 2.448746e-01	ci right 2.465465e-01	k: 250624	n:1020000
OSTN   1020000 perm   576 sec   (1771 perm/sec)   p_kst 2.457098e-01   p_cons 3.821863e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 1.936522e-02	ci left: 3.788959e-02	ci right 3.863146e-02	k: 39407	n:1030000
KS ci ratio: 6.768414e-03	ci left: 2.448252e-01	ci right 2.464888e-01	k: 253026	n:1030000
OSTN   1030000 perm   586 sec   (1758 perm/sec)   p_kst 2.456563e-01   p_cons 3.825922e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 1.927582e-02	ci left: 3.787644e-02	ci right 3.861459e-02	k: 39774	n:1040000
KS ci ratio: 6.736469e-03	ci left: 2.447922e-01	ci right 2.464477e-01	k: 255444	n:1040000
OSTN   1040000 perm   595 sec   (1747 perm/sec)   p_kst 2.456192e-01   p_cons 3.824423e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 1.919039e-02	ci left: 3.785313e-02	ci right 3.858752e-02	k: 40130	n:1050000
KS ci ratio: 6.703732e-03	ci left: 2.448283e-01	ci right 2.464760e-01	k: 257934	n:1050000
OSTN   1050000 perm   605 sec   (1735 perm/sec)   p_kst 2.456514e-01   p_cons 3.821905e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 1.909088e-02	ci left: 3.788848e-02	ci right 3.861970e-02	k: 40548	n:1060000
KS ci ratio: 6.672622e-03	ci left: 2.447996e-01	ci right 2.464395e-01	k: 260356	n:1060000
OSTN   1060000 perm   615 sec   (1725 perm/sec)   p_kst 2.456189e-01   p_cons 3.825283e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 1.901319e-02	ci left: 3.784504e-02	ci right 3.857242e-02	k: 40882	n:1070000
KS ci ratio: 6.640283e-03	ci left: 2.448640e-01	ci right 2.464963e-01	k: 262877	n:1070000
OSTN   1070000 perm   624 sec   (1714 perm/sec)   p_kst 2.456794e-01   p_cons 3.820748e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 1.892427e-02	ci left: 3.784941e-02	ci right 3.857344e-02	k: 41267	n:1080000
KS ci ratio: 6.609928e-03	ci left: 2.448421e-01	ci right 2.464667e-01	k: 265306	n:1080000
OSTN   1080000 perm   634 sec   (1704 perm/sec)   p_kst 2.456537e-01   p_cons 3.821019e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 1.883470e-02	ci left: 3.786102e-02	ci right 3.858180e-02	k: 41660	n:1090000
KS ci ratio: 6.578342e-03	ci left: 2.449131e-01	ci right 2.465304e-01	k: 267836	n:1090000
OSTN   1090000 perm   644 sec   (1693 perm/sec)   p_kst 2.457211e-01   p_cons 3.822018e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 1.874778e-02	ci left: 3.786700e-02	ci right 3.858453e-02	k: 42047	n:1100000
KS ci ratio: 6.548664e-03	ci left: 2.449003e-01	ci right 2.465102e-01	k: 270275	n:1100000
OSTN   1100000 perm   654 sec   (1683 perm/sec)   p_kst 2.457045e-01   p_cons 3.822455e-02   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 1.866823e-02	ci left: 3.784866e-02	ci right 3.856277e-02	k: 42407	n:1110000
KS ci ratio: 6.519845e-03	ci left: 2.448615e-01	ci right 2.464641e-01	k: 272685	n:1110000
OSTN   1110000 perm   664 sec   (1671 perm/sec)   p_kst 2.456622e-01   p_cons 3.820450e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 1.859014e-02	ci left: 3.782887e-02	ci right 3.853959e-02	k: 42765	n:1120000
KS ci ratio: 6.490558e-03	ci left: 2.448717e-01	ci right 2.464671e-01	k: 275149	n:1120000
OSTN   1120000 perm   674 sec   (1661 perm/sec)   p_kst 2.456687e-01   p_cons 3.818304e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 1.850409e-02	ci left: 3.784469e-02	ci right 3.855237e-02	k: 43163	n:1130000
KS ci ratio: 6.461616e-03	ci left: 2.448844e-01	ci right 2.464727e-01	k: 277616	n:1130000
OSTN   1130000 perm   685 sec   (1651 perm/sec)   p_kst 2.456779e-01   p_cons 3.819735e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 1.842077e-02	ci left: 3.785412e-02	ci right 3.855876e-02	k: 43554	n:1140000
KS ci ratio: 6.432525e-03	ci left: 2.449275e-01	ci right 2.465089e-01	k: 280118	n:1140000
OSTN   1140000 perm   695 sec   (1641 perm/sec)   p_kst 2.457175e-01   p_cons 3.820526e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 1.835269e-02	ci left: 3.780712e-02	ci right 3.850826e-02	k: 43880	n:1150000
KS ci ratio: 6.404454e-03	ci left: 2.449334e-01	ci right 2.465079e-01	k: 282578	n:1150000
OSTN   1150000 perm   705 sec   (1631 perm/sec)   p_kst 2.457200e-01   p_cons 3.815652e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 1.827611e-02	ci left: 3.779784e-02	ci right 3.849585e-02	k: 44249	n:1160000
KS ci ratio: 6.376866e-03	ci left: 2.449323e-01	ci right 2.465000e-01	k: 285030	n:1160000
OSTN   1160000 perm   715 sec   (1622 perm/sec)   p_kst 2.457155e-01   p_cons 3.814569e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 1.819666e-02	ci left: 3.780404e-02	ci right 3.849910e-02	k: 44636	n:1170000
KS ci ratio: 6.349983e-03	ci left: 2.449107e-01	ci right 2.464717e-01	k: 287458	n:1170000
OSTN   1170000 perm   726 sec   (1611 perm/sec)   p_kst 2.456906e-01   p_cons 3.815043e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 1.811971e-02	ci left: 3.780424e-02	ci right 3.849634e-02	k: 45016	n:1180000
KS ci ratio: 6.323553e-03	ci left: 2.448828e-01	ci right 2.464371e-01	k: 289878	n:1180000
OSTN   1180000 perm   737 sec   (1602 perm/sec)   p_kst 2.456593e-01   p_cons 3.814915e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 1.804228e-02	ci left: 3.781030e-02	ci right 3.849952e-02	k: 45403	n:1190000
KS ci ratio: 6.297064e-03	ci left: 2.448780e-01	ci right 2.464257e-01	k: 292325	n:1190000
OSTN   1190000 perm   748 sec   (1592 perm/sec)   p_kst 2.456513e-01   p_cons 3.815378e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 1.797216e-02	ci left: 3.779054e-02	ci right 3.847669e-02	k: 45759	n:1200000
KS ci ratio: 6.269595e-03	ci left: 2.449508e-01	ci right 2.464921e-01	k: 294865	n:1200000
OSTN   1200000 perm   758 sec   (1583 perm/sec)   p_kst 2.457208e-01   p_cons 3.813250e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 1.789620e-02	ci left: 3.779827e-02	ci right 3.848163e-02	k: 46148	n:1210000
KS ci ratio: 6.243567e-03	ci left: 2.449579e-01	ci right 2.464929e-01	k: 297327	n:1210000
OSTN   1210000 perm   769 sec   (1574 perm/sec)   p_kst 2.457248e-01   p_cons 3.813884e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 1.782079e-02	ci left: 3.780751e-02	ci right 3.848813e-02	k: 46539	n:1220000
KS ci ratio: 6.217325e-03	ci left: 2.449969e-01	ci right 2.465256e-01	k: 299828	n:1220000
OSTN   1220000 perm   780 sec   (1565 perm/sec)   p_kst 2.457607e-01   p_cons 3.814672e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 1.774869e-02	ci left: 3.780689e-02	ci right 3.848472e-02	k: 46918	n:1230000
KS ci ratio: 6.192619e-03	ci left: 2.449629e-01	ci right 2.464854e-01	k: 302240	n:1230000
OSTN   1230000 perm   790 sec   (1556 perm/sec)   p_kst 2.457236e-01   p_cons 3.814472e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 1.767493e-02	ci left: 3.781673e-02	ci right 3.849188e-02	k: 47310	n:1240000
KS ci ratio: 6.167749e-03	ci left: 2.449570e-01	ci right 2.464733e-01	k: 304686	n:1240000
OSTN   1240000 perm   801 sec   (1548 perm/sec)   p_kst 2.457145e-01   p_cons 3.815323e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 1.760457e-02	ci left: 3.781606e-02	ci right 3.848849e-02	k: 47689	n:1250000
KS ci ratio: 6.143322e-03	ci left: 2.449423e-01	ci right 2.464525e-01	k: 307121	n:1250000
OSTN   1250000 perm   812 sec   (1539 perm/sec)   p_kst 2.456968e-01   p_cons 3.815120e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 1.753581e-02	ci left: 3.781224e-02	ci right 3.848195e-02	k: 48064	n:1260000
KS ci ratio: 6.118659e-03	ci left: 2.449596e-01	ci right 2.464638e-01	k: 309596	n:1260000
OSTN   1260000 perm   824 sec   (1530 perm/sec)   p_kst 2.457111e-01   p_cons 3.814603e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 1.745829e-02	ci left: 3.784848e-02	ci right 3.851584e-02	k: 48490	n:1270000
KS ci ratio: 6.093993e-03	ci left: 2.449947e-01	ci right 2.464930e-01	k: 312094	n:1270000
OSTN   1270000 perm   835 sec   (1521 perm/sec)   p_kst 2.457433e-01   p_cons 3.818110e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 1.738790e-02	ci left: 3.785848e-02	ci right 3.852330e-02	k: 48883	n:1280000
KS ci ratio: 6.069290e-03	ci left: 2.450496e-01	ci right 2.465422e-01	k: 314618	n:1280000
OSTN   1280000 perm   846 sec   (1513 perm/sec)   p_kst 2.457953e-01   p_cons 3.818984e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 1.732035e-02	ci left: 3.785984e-02	ci right 3.852208e-02	k: 49265	n:1290000
KS ci ratio: 6.045227e-03	ci left: 2.450827e-01	ci right 2.465696e-01	k: 317115	n:1290000
OSTN   1290000 perm   857 sec   (1505 perm/sec)   p_kst 2.458256e-01   p_cons 3.818992e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 1.725106e-02	ci left: 3.787191e-02	ci right 3.853168e-02	k: 49661	n:1300000
KS ci ratio: 6.022247e-03	ci left: 2.450662e-01	ci right 2.465472e-01	k: 319548	n:1300000
OSTN   1300000 perm   869 sec   (1496 perm/sec)   p_kst 2.458062e-01   p_cons 3.820077e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 1.718153e-02	ci left: 3.788837e-02	ci right 3.854574e-02	k: 50063	n:1310000
KS ci ratio: 5.998971e-03	ci left: 2.450842e-01	ci right 2.465596e-01	k: 322026	n:1310000
OSTN   1310000 perm   881 sec   (1488 perm/sec)   p_kst 2.458214e-01   p_cons 3.821603e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 1.711988e-02	ci left: 3.787440e-02	ci right 3.852914e-02	k: 50425	n:1320000
KS ci ratio: 5.975499e-03	ci left: 2.451308e-01	ci right 2.466007e-01	k: 324542	n:1320000
OSTN   1320000 perm   892 sec   (1479 perm/sec)   p_kst 2.458652e-01   p_cons 3.820076e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 1.705400e-02	ci left: 3.788161e-02	ci right 3.853394e-02	k: 50815	n:1330000
KS ci ratio: 5.952602e-03	ci left: 2.451578e-01	ci right 2.466222e-01	k: 327033	n:1330000
OSTN   1330000 perm   904 sec   (1471 perm/sec)   p_kst 2.458895e-01   p_cons 3.820677e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 1.698647e-02	ci left: 3.789912e-02	ci right 3.854914e-02	k: 51219	n:1340000
KS ci ratio: 5.930992e-03	ci left: 2.451204e-01	ci right 2.465792e-01	k: 329438	n:1340000
OSTN   1340000 perm   916 sec   (1463 perm/sec)   p_kst 2.458493e-01   p_cons 3.822313e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 1.692143e-02	ci left: 3.790901e-02	ci right 3.855668e-02	k: 51613	n:1350000
KS ci ratio: 5.909097e-03	ci left: 2.451161e-01	ci right 2.465695e-01	k: 331887	n:1350000
OSTN   1350000 perm   928 sec   (1455 perm/sec)   p_kst 2.458422e-01   p_cons 3.823185e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 1.686237e-02	ci left: 3.789605e-02	ci right 3.854122e-02	k: 51976	n:1360000
KS ci ratio: 5.887466e-03	ci left: 2.451103e-01	ci right 2.465584e-01	k: 334334	n:1360000
OSTN   1360000 perm   940 sec   (1447 perm/sec)   p_kst 2.458338e-01   p_cons 3.821765e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 1.680408e-02	ci left: 3.788255e-02	ci right 3.852524e-02	k: 52338	n:1370000
KS ci ratio: 5.866648e-03	ci left: 2.450683e-01	ci right 2.465109e-01	k: 336731	n:1370000
OSTN   1370000 perm   952 sec   (1439 perm/sec)   p_kst 2.457891e-01   p_cons 3.820292e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 1.674887e-02	ci left: 3.785843e-02	ci right 3.849858e-02	k: 52685	n:1380000
KS ci ratio: 5.845866e-03	ci left: 2.450384e-01	ci right 2.464757e-01	k: 339144	n:1380000
OSTN   1380000 perm   964 sec   (1432 perm/sec)   p_kst 2.457565e-01   p_cons 3.817754e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 1.668995e-02	ci left: 3.785329e-02	ci right 3.849108e-02	k: 53058	n:1390000
KS ci ratio: 5.825044e-03	ci left: 2.450255e-01	ci right 2.464576e-01	k: 341580	n:1390000
OSTN   1390000 perm   976 sec   (1424 perm/sec)   p_kst 2.457410e-01   p_cons 3.817122e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 1.663165e-02	ci left: 3.784823e-02	ci right 3.848368e-02	k: 53431	n:1400000
KS ci ratio: 5.804107e-03	ci left: 2.450342e-01	ci right 2.464612e-01	k: 344046	n:1400000
OSTN   1400000 perm   989 sec   (1416 perm/sec)   p_kst 2.457471e-01   p_cons 3.816500e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 1.657556e-02	ci left: 3.783618e-02	ci right 3.846927e-02	k: 53794	n:1410000
KS ci ratio: 5.783117e-03	ci left: 2.450604e-01	ci right 2.464824e-01	k: 346537	n:1410000
OSTN   1410000 perm   1001 sec   (1408 perm/sec)   p_kst 2.457709e-01   p_cons 3.815177e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 1.651495e-02	ci left: 3.784674e-02	ci right 3.847768e-02	k: 54189	n:1420000
KS ci ratio: 5.762803e-03	ci left: 2.450575e-01	ci right 2.464745e-01	k: 348987	n:1420000
OSTN   1420000 perm   1013 sec   (1401 perm/sec)   p_kst 2.457655e-01   p_cons 3.816127e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 1.645423e-02	ci left: 3.786065e-02	ci right 3.848947e-02	k: 54589	n:1430000
KS ci ratio: 5.742853e-03	ci left: 2.450449e-01	ci right 2.464569e-01	k: 351423	n:1430000
OSTN   1430000 perm   1026 sec   (1394 perm/sec)   p_kst 2.457503e-01   p_cons 3.817413e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 1.639308e-02	ci left: 3.787921e-02	ci right 3.850598e-02	k: 54996	n:1440000
KS ci ratio: 5.723086e-03	ci left: 2.450338e-01	ci right 2.464408e-01	k: 353861	n:1440000
OSTN   1440000 perm   1038 sec   (1387 perm/sec)   p_kst 2.457368e-01   p_cons 3.819167e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 1.633368e-02	ci left: 3.789271e-02	ci right 3.851741e-02	k: 55396	n:1450000
KS ci ratio: 5.703417e-03	ci left: 2.450298e-01	ci right 2.464319e-01	k: 356309	n:1450000
OSTN   1450000 perm   1051 sec   (1380 perm/sec)   p_kst 2.457303e-01   p_cons 3.820414e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 1.627705e-02	ci left: 3.789648e-02	ci right 3.851905e-02	k: 55782	n:1460000
KS ci ratio: 5.683907e-03	ci left: 2.450285e-01	ci right 2.464259e-01	k: 358761	n:1460000
OSTN   1460000 perm   1064 sec   (1373 perm/sec)   p_kst 2.457267e-01   p_cons 3.820685e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 1.622220e-02	ci left: 3.789478e-02	ci right 3.851521e-02	k: 56160	n:1470000
KS ci ratio: 5.663910e-03	ci left: 2.450722e-01	ci right 2.464649e-01	k: 361279	n:1470000
OSTN   1470000 perm   1076 sec   (1366 perm/sec)   p_kst 2.457680e-01   p_cons 3.820408e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 1.616954e-02	ci left: 3.788570e-02	ci right 3.850395e-02	k: 56527	n:1480000
KS ci ratio: 5.644246e-03	ci left: 2.451072e-01	ci right 2.464952e-01	k: 363785	n:1480000
OSTN   1480000 perm   1089 sec   (1359 perm/sec)   p_kst 2.458007e-01   p_cons 3.819392e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 1.611386e-02	ci left: 3.789279e-02	ci right 3.850901e-02	k: 56918	n:1490000
KS ci ratio: 5.624754e-03	ci left: 2.451437e-01	ci right 2.465271e-01	k: 366294	n:1490000
OSTN   1490000 perm   1102 sec   (1352 perm/sec)   p_kst 2.458349e-01   p_cons 3.820000e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 1.606006e-02	ci left: 3.789381e-02	ci right 3.850797e-02	k: 57300	n:1500000
KS ci ratio: 5.606431e-03	ci left: 2.451158e-01	ci right 2.464945e-01	k: 368707	n:1500000
OSTN   1500000 perm   1115 sec   (1346 perm/sec)   p_kst 2.458047e-01   p_cons 3.820000e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 1.600968e-02	ci left: 3.788163e-02	ci right 3.849365e-02	k: 57662	n:1510000
KS ci ratio: 5.587617e-03	ci left: 2.451326e-01	ci right 2.465068e-01	k: 371187	n:1510000
OSTN   1510000 perm   1128 sec   (1339 perm/sec)   p_kst 2.458192e-01   p_cons 3.818675e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 1.595534e-02	ci left: 3.788993e-02	ci right 3.849999e-02	k: 58055	n:1520000
KS ci ratio: 5.569485e-03	ci left: 2.451163e-01	ci right 2.464860e-01	k: 373617	n:1520000
OSTN   1520000 perm   1141 sec   (1332 perm/sec)   p_kst 2.458007e-01   p_cons 3.819408e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 1.591103e-02	ci left: 3.785450e-02	ci right 3.846228e-02	k: 58381	n:1530000
KS ci ratio: 5.551352e-03	ci left: 2.451120e-01	ci right 2.464772e-01	k: 376065	n:1530000
OSTN   1530000 perm   1154 sec   (1326 perm/sec)   p_kst 2.457941e-01   p_cons 3.815752e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 1.586723e-02	ci left: 3.781889e-02	ci right 3.842441e-02	k: 58706	n:1540000
KS ci ratio: 5.533473e-03	ci left: 2.451026e-01	ci right 2.464633e-01	k: 378505	n:1540000
OSTN   1540000 perm   1167 sec   (1319 perm/sec)   p_kst 2.457825e-01   p_cons 3.812078e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 1.581530e-02	ci left: 3.782294e-02	ci right 3.842653e-02	k: 59092	n:1550000
KS ci ratio: 5.515995e-03	ci left: 2.450779e-01	ci right 2.464341e-01	k: 380921	n:1550000
OSTN   1550000 perm   1181 sec   (1313 perm/sec)   p_kst 2.457555e-01   p_cons 3.812387e-02   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 1.576070e-02	ci left: 3.784164e-02	ci right 3.844341e-02	k: 59501	n:1560000
KS ci ratio: 5.498787e-03	ci left: 2.450464e-01	ci right 2.463982e-01	k: 383326	n:1560000
OSTN   1560000 perm   1194 sec   (1307 perm/sec)   p_kst 2.457218e-01   p_cons 3.814167e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 1.571294e-02	ci left: 3.783091e-02	ci right 3.843067e-02	k: 59864	n:1570000
KS ci ratio: 5.481645e-03	ci left: 2.450217e-01	ci right 2.463691e-01	k: 385741	n:1570000
OSTN   1570000 perm   1208 sec   (1300 perm/sec)   p_kst 2.456949e-01   p_cons 3.812994e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 1.566264e-02	ci left: 3.783419e-02	ci right 3.843207e-02	k: 60249	n:1580000
KS ci ratio: 5.465352e-03	ci left: 2.449505e-01	ci right 2.462935e-01	k: 388082	n:1580000
OSTN   1580000 perm   1221 sec   (1294 perm/sec)   p_kst 2.456215e-01   p_cons 3.813228e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 1.561215e-02	ci left: 3.784056e-02	ci right 3.843660e-02	k: 60639	n:1590000
KS ci ratio: 5.447752e-03	ci left: 2.449788e-01	ci right 2.463177e-01	k: 390580	n:1590000
OSTN   1590000 perm   1235 sec   (1288 perm/sec)   p_kst 2.456478e-01   p_cons 3.813774e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 1.556055e-02	ci left: 3.785433e-02	ci right 3.844859e-02	k: 61041	n:1600000
KS ci ratio: 5.430651e-03	ci left: 2.449844e-01	ci right 2.463190e-01	k: 393042	n:1600000
OSTN   1600000 perm   1248 sec   (1282 perm/sec)   p_kst 2.456512e-01   p_cons 3.815063e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 1.551261e-02	ci left: 3.785308e-02	ci right 3.844548e-02	k: 61419	n:1610000
KS ci ratio: 5.414118e-03	ci left: 2.449619e-01	ci right 2.462924e-01	k: 395459	n:1610000
OSTN   1610000 perm   1262 sec   (1276 perm/sec)   p_kst 2.456267e-01   p_cons 3.814845e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 1.546746e-02	ci left: 3.784078e-02	ci right 3.843124e-02	k: 61779	n:1620000
KS ci ratio: 5.397106e-03	ci left: 2.449829e-01	ci right 2.463093e-01	k: 397946	n:1620000
OSTN   1620000 perm   1276 sec   (1270 perm/sec)   p_kst 2.456457e-01   p_cons 3.813519e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 1.542411e-02	ci left: 3.782191e-02	ci right 3.841041e-02	k: 62128	n:1630000
KS ci ratio: 5.380083e-03	ci left: 2.450154e-01	ci right 2.463377e-01	k: 400452	n:1630000
OSTN   1630000 perm   1290 sec   (1264 perm/sec)   p_kst 2.456761e-01   p_cons 3.811534e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 1.537857e-02	ci left: 3.781542e-02	ci right 3.840207e-02	k: 62497	n:1640000
KS ci ratio: 5.363751e-03	ci left: 2.450108e-01	ci right 2.463291e-01	k: 402898	n:1640000
OSTN   1640000 perm   1304 sec   (1258 perm/sec)   p_kst 2.456695e-01   p_cons 3.810793e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 1.533203e-02	ci left: 3.781565e-02	ci right 3.840052e-02	k: 62877	n:1650000
KS ci ratio: 5.347347e-03	ci left: 2.450215e-01	ci right 2.463358e-01	k: 405369	n:1650000
OSTN   1650000 perm   1318 sec   (1252 perm/sec)   p_kst 2.456782e-01   p_cons 3.810727e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 1.528805e-02	ci left: 3.780568e-02	ci right 3.838870e-02	k: 63240	n:1660000
KS ci ratio: 5.331457e-03	ci left: 2.450067e-01	ci right 2.463170e-01	k: 407798	n:1660000
OSTN   1660000 perm   1332 sec   (1247 perm/sec)   p_kst 2.456614e-01   p_cons 3.809639e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 1.524283e-02	ci left: 3.780359e-02	ci right 3.838484e-02	k: 63616	n:1670000
KS ci ratio: 5.315717e-03	ci left: 2.449916e-01	ci right 2.462979e-01	k: 410226	n:1670000
OSTN   1670000 perm   1346 sec   (1241 perm/sec)   p_kst 2.456443e-01   p_cons 3.809341e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 1.519221e-02	ci left: 3.782940e-02	ci right 3.840910e-02	k: 64039	n:1680000
KS ci ratio: 5.300506e-03	ci left: 2.449493e-01	ci right 2.462516e-01	k: 412608	n:1680000
OSTN   1680000 perm   1361 sec   (1234 perm/sec)   p_kst 2.456000e-01   p_cons 3.811845e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 1.514979e-02	ci left: 3.781777e-02	ci right 3.839565e-02	k: 64399	n:1690000
KS ci ratio: 5.284970e-03	ci left: 2.449394e-01	ci right 2.462378e-01	k: 415044	n:1690000
OSTN   1690000 perm   1376 sec   (1229 perm/sec)   p_kst 2.455882e-01   p_cons 3.810592e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 1.510456e-02	ci left: 3.782151e-02	ci right 3.839771e-02	k: 64785	n:1700000
KS ci ratio: 5.269343e-03	ci left: 2.449454e-01	ci right 2.462401e-01	k: 417507	n:1700000
OSTN   1700000 perm   1390 sec   (1223 perm/sec)   p_kst 2.455924e-01   p_cons 3.810882e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 1.505878e-02	ci left: 3.782987e-02	ci right 3.840444e-02	k: 65179	n:1710000
KS ci ratio: 5.254037e-03	ci left: 2.449386e-01	ci right 2.462295e-01	k: 419948	n:1710000
OSTN   1710000 perm   1404 sec   (1218 perm/sec)   p_kst 2.455836e-01   p_cons 3.811637e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 1.501330e-02	ci left: 3.783872e-02	ci right 3.841167e-02	k: 65574	n:1720000
KS ci ratio: 5.238847e-03	ci left: 2.449330e-01	ci right 2.462201e-01	k: 422391	n:1720000
OSTN   1720000 perm   1419 sec   (1213 perm/sec)   p_kst 2.455762e-01   p_cons 3.812442e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 1.496905e-02	ci left: 3.784344e-02	ci right 3.841476e-02	k: 65962	n:1730000
KS ci ratio: 5.224204e-03	ci left: 2.448981e-01	ci right 2.461814e-01	k: 424783	n:1730000
OSTN   1730000 perm   1434 sec   (1207 perm/sec)   p_kst 2.455393e-01   p_cons 3.812832e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 1.492963e-02	ci left: 3.782634e-02	ci right 3.839589e-02	k: 66312	n:1740000
KS ci ratio: 5.209626e-03	ci left: 2.448675e-01	ci right 2.461471e-01	k: 427182	n:1740000
OSTN   1740000 perm   1448 sec   (1202 perm/sec)   p_kst 2.455069e-01   p_cons 3.811034e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 1.488774e-02	ci left: 3.782311e-02	ci right 3.839099e-02	k: 66686	n:1750000
KS ci ratio: 5.195057e-03	ci left: 2.448454e-01	ci right 2.461212e-01	k: 429595	n:1750000
OSTN   1750000 perm   1463 sec   (1196 perm/sec)   p_kst 2.454829e-01   p_cons 3.810629e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 1.484827e-02	ci left: 3.780972e-02	ci right 3.837589e-02	k: 67042	n:1760000
KS ci ratio: 5.180633e-03	ci left: 2.448217e-01	ci right 2.460939e-01	k: 432005	n:1760000
OSTN   1760000 perm   1478 sec   (1191 perm/sec)   p_kst 2.454574e-01   p_cons 3.809205e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 1.480660e-02	ci left: 3.780888e-02	ci right 3.837343e-02	k: 67420	n:1770000
KS ci ratio: 5.165652e-03	ci left: 2.448469e-01	ci right 2.461155e-01	k: 434501	n:1770000
OSTN   1770000 perm   1492 sec   (1186 perm/sec)   p_kst 2.454808e-01   p_cons 3.809040e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 1.476619e-02	ci left: 3.780356e-02	ci right 3.836648e-02	k: 67790	n:1780000
KS ci ratio: 5.151682e-03	ci left: 2.448084e-01	ci right 2.460733e-01	k: 436884	n:1780000
OSTN   1780000 perm   1508 sec   (1181 perm/sec)   p_kst 2.454404e-01   p_cons 3.808427e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 1.472576e-02	ci left: 3.779998e-02	ci right 3.836129e-02	k: 68163	n:1790000
KS ci ratio: 5.136686e-03	ci left: 2.448523e-01	ci right 2.461138e-01	k: 439414	n:1790000
OSTN   1790000 perm   1523 sec   (1176 perm/sec)   p_kst 2.454827e-01   p_cons 3.807989e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 1.468433e-02	ci left: 3.780308e-02	ci right 3.836285e-02	k: 68548	n:1800000
KS ci ratio: 5.122596e-03	ci left: 2.448398e-01	ci right 2.460977e-01	k: 441843	n:1800000
OSTN   1800000 perm   1538 sec   (1171 perm/sec)   p_kst 2.454683e-01   p_cons 3.808222e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 1.464414e-02	ci left: 3.780175e-02	ci right 3.835995e-02	k: 68925	n:1810000
KS ci ratio: 5.109056e-03	ci left: 2.447959e-01	ci right 2.460503e-01	k: 444215	n:1810000
OSTN   1810000 perm   1553 sec   (1165 perm/sec)   p_kst 2.454227e-01   p_cons 3.808011e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 1.460525e-02	ci left: 3.779551e-02	ci right 3.835212e-02	k: 69293	n:1820000
KS ci ratio: 5.094300e-03	ci left: 2.448485e-01	ci right 2.460996e-01	k: 446762	n:1820000
OSTN   1820000 perm   1569 sec   (1160 perm/sec)   p_kst 2.454736e-01   p_cons 3.807308e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 1.456755e-02	ci left: 3.778498e-02	ci right 3.833998e-02	k: 69653	n:1830000
KS ci ratio: 5.080600e-03	ci left: 2.448329e-01	ci right 2.460805e-01	k: 449185	n:1830000
OSTN   1830000 perm   1584 sec   (1155 perm/sec)   p_kst 2.454563e-01   p_cons 3.806175e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 1.452711e-02	ci left: 3.778973e-02	ci right 3.834325e-02	k: 70041	n:1840000
KS ci ratio: 5.067009e-03	ci left: 2.448174e-01	ci right 2.460616e-01	k: 451608	n:1840000
OSTN   1840000 perm   1599 sec   (1151 perm/sec)   p_kst 2.454391e-01   p_cons 3.806576e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 1.448808e-02	ci left: 3.778904e-02	ci right 3.834106e-02	k: 70419	n:1850000
KS ci ratio: 5.053343e-03	ci left: 2.448157e-01	ci right 2.460565e-01	k: 454056	n:1850000
OSTN   1850000 perm   1615 sec   (1146 perm/sec)   p_kst 2.454357e-01   p_cons 3.806432e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 1.444809e-02	ci left: 3.779479e-02	ci right 3.834536e-02	k: 70809	n:1860000
KS ci ratio: 5.039883e-03	ci left: 2.448069e-01	ci right 2.460444e-01	k: 456491	n:1860000
OSTN   1860000 perm   1630 sec   (1141 perm/sec)   p_kst 2.454253e-01   p_cons 3.806935e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 1.440611e-02	ci left: 3.781221e-02	ci right 3.836141e-02	k: 71221	n:1870000
KS ci ratio: 5.026521e-03	ci left: 2.447989e-01	ci right 2.460330e-01	k: 458927	n:1870000
OSTN   1870000 perm   1646 sec   (1136 perm/sec)   p_kst 2.454155e-01   p_cons 3.808610e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 1.436826e-02	ci left: 3.781036e-02	ci right 3.835808e-02	k: 71597	n:1880000
KS ci ratio: 5.013338e-03	ci left: 2.447855e-01	ci right 2.460163e-01	k: 461353	n:1880000
OSTN   1880000 perm   1662 sec   (1131 perm/sec)   p_kst 2.454005e-01   p_cons 3.808351e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 1.432759e-02	ci left: 3.782435e-02	ci right 3.837071e-02	k: 72003	n:1890000
KS ci ratio: 5.000408e-03	ci left: 2.447613e-01	ci right 2.459887e-01	k: 463758	n:1890000
OSTN   1890000 perm   1677 sec   (1127 perm/sec)   p_kst 2.453746e-01   p_cons 3.809683e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 1.428799e-02	ci left: 3.783453e-02	ci right 3.837951e-02	k: 72402	n:1900000
KS ci ratio: 4.987548e-03	ci left: 2.447393e-01	ci right 2.459635e-01	k: 466167	n:1900000
OSTN   1900000 perm   1693 sec   (1122 perm/sec)   p_kst 2.453511e-01   p_cons 3.810632e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 1.425075e-02	ci left: 3.783416e-02	ci right 3.837771e-02	k: 72781	n:1910000
KS ci ratio: 4.974099e-03	ci left: 2.447689e-01	ci right 2.459900e-01	k: 468674	n:1910000
OSTN   1910000 perm   1709 sec   (1118 perm/sec)   p_kst 2.453791e-01   p_cons 3.810524e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 1.421612e-02	ci left: 3.782187e-02	ci right 3.836390e-02	k: 73137	n:1920000
KS ci ratio: 4.961288e-03	ci left: 2.447587e-01	ci right 2.459765e-01	k: 471105	n:1920000
OSTN   1920000 perm   1725 sec   (1113 perm/sec)   p_kst 2.453672e-01   p_cons 3.809219e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 1.418264e-02	ci left: 3.780505e-02	ci right 3.834556e-02	k: 73484	n:1930000
KS ci ratio: 4.948457e-03	ci left: 2.447573e-01	ci right 2.459720e-01	k: 473553	n:1930000
OSTN   1930000 perm   1741 sec   (1109 perm/sec)   p_kst 2.453642e-01   p_cons 3.807461e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 1.414811e-02	ci left: 3.779509e-02	ci right 3.833413e-02	k: 73844	n:1940000
KS ci ratio: 4.935197e-03	ci left: 2.447956e-01	ci right 2.460072e-01	k: 476078	n:1940000
OSTN   1940000 perm   1757 sec   (1104 perm/sec)   p_kst 2.454010e-01   p_cons 3.806392e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 1.411116e-02	ci left: 3.779903e-02	ci right 3.833671e-02	k: 74231	n:1950000
KS ci ratio: 4.922594e-03	ci left: 2.447920e-01	ci right 2.460005e-01	k: 478522	n:1950000
OSTN   1950000 perm   1773 sec   (1100 perm/sec)   p_kst 2.453959e-01   p_cons 3.806718e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 1.407430e-02	ci left: 3.780394e-02	ci right 3.834028e-02	k: 74620	n:1960000
KS ci ratio: 4.910230e-03	ci left: 2.447778e-01	ci right 2.459832e-01	k: 480945	n:1960000
OSTN   1960000 perm   1789 sec   (1096 perm/sec)   p_kst 2.453801e-01   p_cons 3.807143e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 1.403666e-02	ci left: 3.781438e-02	ci right 3.834942e-02	k: 75020	n:1970000
KS ci ratio: 4.897905e-03	ci left: 2.447678e-01	ci right 2.459700e-01	k: 483376	n:1970000
OSTN   1970000 perm   1805 sec   (1091 perm/sec)   p_kst 2.453685e-01   p_cons 3.808122e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 1.399816e-02	ci left: 3.783075e-02	ci right 3.836454e-02	k: 75432	n:1980000
KS ci ratio: 4.885645e-03	ci left: 2.447599e-01	ci right 2.459591e-01	k: 485811	n:1980000
OSTN   1980000 perm   1822 sec   (1087 perm/sec)   p_kst 2.453591e-01   p_cons 3.809697e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 1.396217e-02	ci left: 3.783544e-02	ci right 3.836791e-02	k: 75821	n:1990000
KS ci ratio: 4.873550e-03	ci left: 2.447465e-01	ci right 2.459427e-01	k: 488235	n:1990000
OSTN   1990000 perm   1838 sec   (1082 perm/sec)   p_kst 2.453442e-01   p_cons 3.810101e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 1.392627e-02	ci left: 3.784108e-02	ci right 3.837225e-02	k: 76212	n:2000000
KS ci ratio: 4.861498e-03	ci left: 2.447368e-01	ci right 2.459300e-01	k: 490666	n:2000000
OSTN   2000000 perm   1855 sec   (1078 perm/sec)   p_kst 2.453330e-01   p_cons 3.810600e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 1.389009e-02	ci left: 3.784965e-02	ci right 3.837955e-02	k: 76609	n:2010000
KS ci ratio: 4.849255e-03	ci left: 2.447485e-01	ci right 2.459388e-01	k: 493140	n:2010000
OSTN   2010000 perm   1872 sec   (1074 perm/sec)   p_kst 2.453433e-01   p_cons 3.811393e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 1.385278e-02	ci left: 3.786553e-02	ci right 3.839421e-02	k: 77021	n:2020000
KS ci ratio: 4.837240e-03	ci left: 2.447498e-01	ci right 2.459371e-01	k: 495593	n:2020000
OSTN   2020000 perm   1889 sec   (1069 perm/sec)   p_kst 2.453431e-01   p_cons 3.812921e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 1.381855e-02	ci left: 3.786652e-02	ci right 3.839391e-02	k: 77403	n:2030000
KS ci ratio: 4.824929e-03	ci left: 2.447806e-01	ci right 2.459650e-01	k: 498106	n:2030000
OSTN   2030000 perm   1907 sec   (1065 perm/sec)   p_kst 2.453724e-01   p_cons 3.812956e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 1.378273e-02	ci left: 3.787728e-02	ci right 3.840344e-02	k: 77805	n:2040000
KS ci ratio: 4.813654e-03	ci left: 2.447386e-01	ci right 2.459200e-01	k: 500471	n:2040000
OSTN   2040000 perm   1924 sec   (1060 perm/sec)   p_kst 2.453289e-01   p_cons 3.813971e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 1.374920e-02	ci left: 3.787725e-02	ci right 3.840211e-02	k: 78185	n:2050000
KS ci ratio: 4.802034e-03	ci left: 2.447296e-01	ci right 2.459081e-01	k: 502903	n:2050000
OSTN   2050000 perm   1940 sec   (1056 perm/sec)   p_kst 2.453185e-01   p_cons 3.813902e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 1.371719e-02	ci left: 3.787043e-02	ci right 3.839397e-02	k: 78551	n:2060000
KS ci ratio: 4.789976e-03	ci left: 2.447611e-01	ci right 2.459367e-01	k: 505418	n:2060000
OSTN   2060000 perm   1957 sec   (1052 perm/sec)   p_kst 2.453485e-01   p_cons 3.813155e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 1.368395e-02	ci left: 3.787139e-02	ci right 3.839367e-02	k: 78933	n:2070000
KS ci ratio: 4.778027e-03	ci left: 2.447907e-01	ci right 2.459636e-01	k: 507930	n:2070000
OSTN   2070000 perm   1975 sec   (1048 perm/sec)   p_kst 2.453768e-01   p_cons 3.813188e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 1.365024e-02	ci left: 3.787618e-02	ci right 3.839722e-02	k: 79323	n:2080000
KS ci ratio: 4.766328e-03	ci left: 2.448076e-01	ci right 2.459777e-01	k: 510416	n:2080000
OSTN   2080000 perm   1992 sec   (1044 perm/sec)   p_kst 2.453923e-01   p_cons 3.813606e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 1.362042e-02	ci left: 3.786137e-02	ci right 3.838106e-02	k: 79672	n:2090000
KS ci ratio: 4.755305e-03	ci left: 2.447785e-01	ci right 2.459457e-01	k: 512806	n:2090000
OSTN   2090000 perm   2010 sec   (1040 perm/sec)   p_kst 2.453617e-01   p_cons 3.812057e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 1.358639e-02	ci left: 3.787043e-02	ci right 3.838894e-02	k: 80071	n:2100000
KS ci ratio: 4.743869e-03	ci left: 2.447876e-01	ci right 2.459521e-01	k: 515276	n:2100000
OSTN   2100000 perm   2028 sec   (1036 perm/sec)   p_kst 2.453695e-01   p_cons 3.812905e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 1.355742e-02	ci left: 3.785343e-02	ci right 3.837059e-02	k: 80415	n:2110000
KS ci ratio: 4.732358e-03	ci left: 2.448091e-01	ci right 2.459708e-01	k: 517772	n:2110000
OSTN   2110000 perm   2046 sec   (1031 perm/sec)   p_kst 2.453896e-01   p_cons 3.811137e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 1.352672e-02	ci left: 3.784693e-02	ci right 3.836282e-02	k: 80781	n:2120000
KS ci ratio: 4.721387e-03	ci left: 2.447945e-01	ci right 2.459534e-01	k: 520192	n:2120000
OSTN   2120000 perm   2064 sec   (1027 perm/sec)   p_kst 2.453736e-01   p_cons 3.810425e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 1.349494e-02	ci left: 3.784751e-02	ci right 3.836219e-02	k: 81162	n:2130000
KS ci ratio: 4.710600e-03	ci left: 2.447715e-01	ci right 2.459277e-01	k: 522594	n:2130000
OSTN   2130000 perm   2082 sec   (1023 perm/sec)   p_kst 2.453493e-01   p_cons 3.810423e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 1.346243e-02	ci left: 3.785322e-02	ci right 3.836672e-02	k: 81554	n:2140000
KS ci ratio: 4.699323e-03	ci left: 2.447932e-01	ci right 2.459467e-01	k: 525091	n:2140000
OSTN   2140000 perm   2100 sec   (1019 perm/sec)   p_kst 2.453696e-01   p_cons 3.810935e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 1.343271e-02	ci left: 3.784496e-02	ci right 3.835721e-02	k: 81916	n:2150000
KS ci ratio: 4.688292e-03	ci left: 2.448017e-01	ci right 2.459525e-01	k: 527560	n:2150000
OSTN   2150000 perm   2118 sec   (1015 perm/sec)   p_kst 2.453767e-01   p_cons 3.810047e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 1.340107e-02	ci left: 3.784832e-02	ci right 3.835940e-02	k: 82303	n:2160000
KS ci ratio: 4.677542e-03	ci left: 2.447939e-01	ci right 2.459420e-01	k: 529994	n:2160000
OSTN   2160000 perm   2136 sec   (1011 perm/sec)   p_kst 2.453676e-01   p_cons 3.810324e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 1.336806e-02	ci left: 3.786038e-02	ci right 3.837035e-02	k: 82709	n:2170000
KS ci ratio: 4.666454e-03	ci left: 2.448188e-01	ci right 2.459644e-01	k: 532499	n:2170000
OSTN   2170000 perm   2155 sec   (1007 perm/sec)   p_kst 2.453912e-01   p_cons 3.811475e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 1.333872e-02	ci left: 3.785358e-02	ci right 3.836233e-02	k: 83074	n:2180000
KS ci ratio: 4.655525e-03	ci left: 2.448371e-01	ci right 2.459801e-01	k: 534990	n:2180000
OSTN   2180000 perm   2173 sec   (1003 perm/sec)   p_kst 2.454083e-01   p_cons 3.810734e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 1.330973e-02	ci left: 3.784593e-02	ci right 3.835347e-02	k: 83437	n:2190000
KS ci ratio: 4.644867e-03	ci left: 2.448398e-01	ci right 2.459801e-01	k: 537447	n:2190000
OSTN   2190000 perm   2191 sec   (999 perm/sec)   p_kst 2.454096e-01   p_cons 3.809909e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 1.327936e-02	ci left: 3.784696e-02	ci right 3.835335e-02	k: 83819	n:2200000
KS ci ratio: 4.634243e-03	ci left: 2.448456e-01	ci right 2.459833e-01	k: 539911	n:2200000
OSTN   2200000 perm   2210 sec   (996 perm/sec)   p_kst 2.454141e-01   p_cons 3.809955e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 1.324904e-02	ci left: 3.784889e-02	ci right 3.835413e-02	k: 84203	n:2210000
KS ci ratio: 4.623747e-03	ci left: 2.448468e-01	ci right 2.459819e-01	k: 542365	n:2210000
OSTN   2210000 perm   2228 sec   (992 perm/sec)   p_kst 2.454140e-01   p_cons 3.810090e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 1.322152e-02	ci left: 3.783643e-02	ci right 3.834045e-02	k: 84555	n:2220000
KS ci ratio: 4.613316e-03	ci left: 2.448484e-01	ci right 2.459810e-01	k: 544820	n:2220000
OSTN   2220000 perm   2247 sec   (988 perm/sec)   p_kst 2.454144e-01   p_cons 3.808784e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 1.319151e-02	ci left: 3.783883e-02	ci right 3.834174e-02	k: 84940	n:2230000
KS ci ratio: 4.602834e-03	ci left: 2.448600e-01	ci right 2.459900e-01	k: 547297	n:2230000
OSTN   2230000 perm   2266 sec   (984 perm/sec)   p_kst 2.454247e-01   p_cons 3.808969e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 1.316355e-02	ci left: 3.783098e-02	ci right 3.833271e-02	k: 85302	n:2240000
KS ci ratio: 4.592627e-03	ci left: 2.448549e-01	ci right 2.459824e-01	k: 549737	n:2240000
OSTN   2240000 perm   2285 sec   (980 perm/sec)   p_kst 2.454183e-01   p_cons 3.808125e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 1.313249e-02	ci left: 3.784137e-02	ci right 3.834204e-02	k: 85705	n:2250000
KS ci ratio: 4.582268e-03	ci left: 2.448676e-01	ci right 2.459926e-01	k: 552217	n:2250000
OSTN   2250000 perm   2305 sec   (976 perm/sec)   p_kst 2.454298e-01   p_cons 3.809111e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 1.310443e-02	ci left: 3.783623e-02	ci right 3.833575e-02	k: 86073	n:2260000
KS ci ratio: 4.572273e-03	ci left: 2.448563e-01	ci right 2.459789e-01	k: 554643	n:2260000
OSTN   2260000 perm   2324 sec   (973 perm/sec)   p_kst 2.454173e-01   p_cons 3.808540e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 1.307332e-02	ci left: 3.784914e-02	ci right 3.834764e-02	k: 86482	n:2270000
KS ci ratio: 4.562632e-03	ci left: 2.448218e-01	ci right 2.459418e-01	k: 557016	n:2270000
OSTN   2270000 perm   2345 sec   (968 perm/sec)   p_kst 2.453815e-01   p_cons 3.809780e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 1.304587e-02	ci left: 3.784270e-02	ci right 3.834006e-02	k: 86847	n:2280000
KS ci ratio: 4.552285e-03	ci left: 2.448499e-01	ci right 2.459675e-01	k: 559531	n:2280000
OSTN   2280000 perm   2364 sec   (965 perm/sec)   p_kst 2.454083e-01   p_cons 3.809079e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 1.301735e-02	ci left: 3.784328e-02	ci right 3.833955e-02	k: 87228	n:2290000
KS ci ratio: 4.541880e-03	ci left: 2.448881e-01	ci right 2.460033e-01	k: 562070	n:2290000
OSTN   2290000 perm   2382 sec   (961 perm/sec)   p_kst 2.454454e-01   p_cons 3.809083e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 1.298940e-02	ci left: 3.784169e-02	ci right 3.833687e-02	k: 87604	n:2300000
KS ci ratio: 4.532333e-03	ci left: 2.448618e-01	ci right 2.459745e-01	k: 564461	n:2300000
OSTN   2300000 perm   2401 sec   (958 perm/sec)   p_kst 2.454178e-01   p_cons 3.808870e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 1.295986e-02	ci left: 3.785004e-02	ci right 3.834419e-02	k: 88003	n:2310000
KS ci ratio: 4.522661e-03	ci left: 2.448508e-01	ci right 2.459611e-01	k: 566887	n:2310000
OSTN   2310000 perm   2420 sec   (955 perm/sec)   p_kst 2.454056e-01   p_cons 3.809654e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 1.293266e-02	ci left: 3.784629e-02	ci right 3.833935e-02	k: 88374	n:2320000
KS ci ratio: 4.512463e-03	ci left: 2.448881e-01	ci right 2.459961e-01	k: 569425	n:2320000
OSTN   2320000 perm   2439 sec   (951 perm/sec)   p_kst 2.454418e-01   p_cons 3.809224e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 1.290449e-02	ci left: 3.784899e-02	ci right 3.834100e-02	k: 88760	n:2330000
KS ci ratio: 4.502907e-03	ci left: 2.448780e-01	ci right 2.459836e-01	k: 571853	n:2330000
OSTN   2330000 perm   2458 sec   (948 perm/sec)   p_kst 2.454305e-01   p_cons 3.809442e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 1.287764e-02	ci left: 3.784528e-02	ci right 3.833621e-02	k: 89131	n:2340000
KS ci ratio: 4.492800e-03	ci left: 2.449183e-01	ci right 2.460216e-01	k: 574399	n:2340000
OSTN   2340000 perm   2477 sec   (945 perm/sec)   p_kst 2.454697e-01   p_cons 3.809017e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 1.284864e-02	ci left: 3.785475e-02	ci right 3.834469e-02	k: 89533	n:2350000
KS ci ratio: 4.483218e-03	ci left: 2.449205e-01	ci right 2.460214e-01	k: 576856	n:2350000
OSTN   2350000 perm   2497 sec   (941 perm/sec)   p_kst 2.454706e-01   p_cons 3.809915e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 1.281990e-02	ci left: 3.786372e-02	ci right 3.835267e-02	k: 89934	n:2360000
KS ci ratio: 4.473448e-03	ci left: 2.449434e-01	ci right 2.460420e-01	k: 579362	n:2360000
OSTN   2360000 perm   2516 sec   (938 perm/sec)   p_kst 2.454924e-01   p_cons 3.810763e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 1.279497e-02	ci left: 3.785200e-02	ci right 3.833985e-02	k: 90286	n:2370000
KS ci ratio: 4.464274e-03	ci left: 2.449218e-01	ci right 2.460181e-01	k: 581763	n:2370000
OSTN   2370000 perm   2536 sec   (935 perm/sec)   p_kst 2.454696e-01   p_cons 3.809536e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 1.276740e-02	ci left: 3.785630e-02	ci right 3.834314e-02	k: 90676	n:2380000
KS ci ratio: 4.454965e-03	ci left: 2.449164e-01	ci right 2.460103e-01	k: 584202	n:2380000
OSTN   2380000 perm   2555 sec   (931 perm/sec)   p_kst 2.454630e-01   p_cons 3.809916e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 1.274110e-02	ci left: 3.785431e-02	ci right 3.834012e-02	k: 91051	n:2390000
KS ci ratio: 4.445613e-03	ci left: 2.449193e-01	ci right 2.460110e-01	k: 586661	n:2390000
OSTN   2390000 perm   2575 sec   (928 perm/sec)   p_kst 2.454649e-01   p_cons 3.809665e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 1.271467e-02	ci left: 3.785400e-02	ci right 3.833878e-02	k: 91430	n:2400000
KS ci ratio: 4.436355e-03	ci left: 2.449194e-01	ci right 2.460087e-01	k: 589113	n:2400000
OSTN   2400000 perm   2594 sec   (925 perm/sec)   p_kst 2.454638e-01   p_cons 3.809583e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 1.268848e-02	ci left: 3.785328e-02	ci right 3.833705e-02	k: 91808	n:2410000
KS ci ratio: 4.427155e-03	ci left: 2.449194e-01	ci right 2.460065e-01	k: 591565	n:2410000
OSTN   2410000 perm   2614 sec   (922 perm/sec)   p_kst 2.454627e-01   p_cons 3.809461e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 1.266044e-02	ci left: 3.786410e-02	ci right 3.834693e-02	k: 92214	n:2420000
KS ci ratio: 4.418036e-03	ci left: 2.449174e-01	ci right 2.460022e-01	k: 594012	n:2420000
OSTN   2420000 perm   2634 sec   (919 perm/sec)   p_kst 2.454595e-01   p_cons 3.810496e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 1.263409e-02	ci left: 3.786621e-02	ci right 3.834806e-02	k: 92599	n:2430000
KS ci ratio: 4.409188e-03	ci left: 2.448973e-01	ci right 2.459799e-01	k: 596415	n:2430000
OSTN   2430000 perm   2654 sec   (916 perm/sec)   p_kst 2.454383e-01   p_cons 3.810658e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 1.260775e-02	ci left: 3.786913e-02	ci right 3.835000e-02	k: 92986	n:2440000
KS ci ratio: 4.400414e-03	ci left: 2.448757e-01	ci right 2.459560e-01	k: 598814	n:2440000
OSTN   2440000 perm   2674 sec   (912 perm/sec)   p_kst 2.454156e-01   p_cons 3.810902e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 1.257815e-02	ci left: 3.789196e-02	ci right 3.837199e-02	k: 93422	n:2450000
KS ci ratio: 4.391730e-03	ci left: 2.448511e-01	ci right 2.459291e-01	k: 601205	n:2450000
OSTN   2450000 perm   2695 sec   (909 perm/sec)   p_kst 2.453898e-01   p_cons 3.813143e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 1.255391e-02	ci left: 3.788462e-02	ci right 3.836362e-02	k: 93784	n:2460000
KS ci ratio: 4.382563e-03	ci left: 2.448717e-01	ci right 2.459476e-01	k: 603707	n:2460000
OSTN   2460000 perm   2715 sec   (906 perm/sec)   p_kst 2.454093e-01   p_cons 3.812358e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 1.252703e-02	ci left: 3.789349e-02	ci right 3.837157e-02	k: 94186	n:2470000
KS ci ratio: 4.373946e-03	ci left: 2.448505e-01	ci right 2.459242e-01	k: 606106	n:2470000
OSTN   2470000 perm   2735 sec   (903 perm/sec)   p_kst 2.453870e-01   p_cons 3.813198e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 1.250328e-02	ci left: 3.788499e-02	ci right 3.836205e-02	k: 94545	n:2480000
KS ci ratio: 4.365037e-03	ci left: 2.448585e-01	ci right 2.459300e-01	k: 608577	n:2480000
OSTN   2480000 perm   2756 sec   (900 perm/sec)   p_kst 2.453940e-01   p_cons 3.812298e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 1.247789e-02	ci left: 3.788698e-02	ci right 3.836309e-02	k: 94930	n:2490000
KS ci ratio: 4.355937e-03	ci left: 2.448873e-01	ci right 2.459567e-01	k: 611100	n:2490000
OSTN   2490000 perm   2777 sec   (897 perm/sec)   p_kst 2.454217e-01   p_cons 3.812450e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 1.245055e-02	ci left: 3.790132e-02	ci right 3.837655e-02	k: 95346	n:2500000
KS ci ratio: 4.347016e-03	ci left: 2.449054e-01	ci right 2.459727e-01	k: 613597	n:2500000
OSTN   2500000 perm   2797 sec   (894 perm/sec)   p_kst 2.454388e-01   p_cons 3.813840e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 1.242737e-02	ci left: 3.789210e-02	ci right 3.836633e-02	k: 95703	n:2510000
KS ci ratio: 4.338265e-03	ci left: 2.449135e-01	ci right 2.459787e-01	k: 616069	n:2510000
OSTN   2510000 perm   2818 sec   (891 perm/sec)   p_kst 2.454458e-01   p_cons 3.812869e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 1.240479e-02	ci left: 3.788019e-02	ci right 3.835341e-02	k: 96053	n:2520000
KS ci ratio: 4.329674e-03	ci left: 2.449124e-01	ci right 2.459755e-01	k: 618518	n:2520000
OSTN   2520000 perm   2839 sec   (888 perm/sec)   p_kst 2.454437e-01   p_cons 3.811627e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 1.237813e-02	ci left: 3.789321e-02	ci right 3.836556e-02	k: 96466	n:2530000
KS ci ratio: 4.320821e-03	ci left: 2.449382e-01	ci right 2.459992e-01	k: 621035	n:2530000
OSTN   2530000 perm   2859 sec   (885 perm/sec)   p_kst 2.454684e-01   p_cons 3.812885e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 1.235263e-02	ci left: 3.790023e-02	ci right 3.837169e-02	k: 96864	n:2540000
KS ci ratio: 4.312260e-03	ci left: 2.449433e-01	ci right 2.460022e-01	k: 623500	n:2540000
OSTN   2540000 perm   2879 sec   (882 perm/sec)   p_kst 2.454724e-01   p_cons 3.813543e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 1.232749e-02	ci left: 3.790603e-02	ci right 3.837659e-02	k: 97259	n:2550000
KS ci ratio: 4.303781e-03	ci left: 2.449456e-01	ci right 2.460024e-01	k: 625958	n:2550000
OSTN   2550000 perm   2900 sec   (879 perm/sec)   p_kst 2.454737e-01   p_cons 3.814078e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 1.230577e-02	ci left: 3.789230e-02	ci right 3.836187e-02	k: 97604	n:2560000
KS ci ratio: 4.295547e-03	ci left: 2.449311e-01	ci right 2.459859e-01	k: 628373	n:2560000
OSTN   2560000 perm   2921 sec   (876 perm/sec)   p_kst 2.454582e-01   p_cons 3.812656e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 1.228287e-02	ci left: 3.788645e-02	ci right 3.835506e-02	k: 97969	n:2570000
KS ci ratio: 4.286991e-03	ci left: 2.449486e-01	ci right 2.460014e-01	k: 630870	n:2570000
OSTN   2570000 perm   2942 sec   (874 perm/sec)   p_kst 2.454747e-01   p_cons 3.812023e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 1.225912e-02	ci left: 3.788644e-02	ci right 3.835413e-02	k: 98349	n:2580000
KS ci ratio: 4.278776e-03	ci left: 2.449408e-01	ci right 2.459915e-01	k: 633302	n:2580000
OSTN   2580000 perm   2963 sec   (871 perm/sec)   p_kst 2.454659e-01   p_cons 3.811977e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 1.223557e-02	ci left: 3.788604e-02	ci right 3.835283e-02	k: 98728	n:2590000
KS ci ratio: 4.270404e-03	ci left: 2.449509e-01	ci right 2.459995e-01	k: 635780	n:2590000
OSTN   2590000 perm   2984 sec   (868 perm/sec)   p_kst 2.454749e-01   p_cons 3.811892e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 1.221120e-02	ci left: 3.789140e-02	ci right 3.835732e-02	k: 99122	n:2600000
KS ci ratio: 4.262267e-03	ci left: 2.449447e-01	ci right 2.459913e-01	k: 638216	n:2600000
OSTN   2600000 perm   3005 sec   (865 perm/sec)   p_kst 2.454677e-01   p_cons 3.812385e-02   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 1.218971e-02	ci left: 3.788030e-02	ci right 3.834525e-02	k: 99473	n:2610000
KS ci ratio: 4.253947e-03	ci left: 2.449584e-01	ci right 2.460031e-01	k: 640704	n:2610000
OSTN   2610000 perm   3026 sec   (863 perm/sec)   p_kst 2.454805e-01   p_cons 3.811226e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 1.216662e-02	ci left: 3.787955e-02	ci right 3.834361e-02	k: 99851	n:2620000
KS ci ratio: 4.246070e-03	ci left: 2.449378e-01	ci right 2.459804e-01	k: 643102	n:2620000
OSTN   2620000 perm   3047 sec   (860 perm/sec)   p_kst 2.454588e-01   p_cons 3.811107e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 1.214253e-02	ci left: 3.788563e-02	ci right 3.834884e-02	k: 100247	n:2630000
KS ci ratio: 4.237797e-03	ci left: 2.449556e-01	ci right 2.459963e-01	k: 645601	n:2630000
OSTN   2630000 perm   3069 sec   (857 perm/sec)   p_kst 2.454757e-01   p_cons 3.811673e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 1.211846e-02	ci left: 3.789243e-02	ci right 3.835480e-02	k: 100645	n:2640000
KS ci ratio: 4.229714e-03	ci left: 2.449609e-01	ci right 2.459995e-01	k: 648067	n:2640000
OSTN   2640000 perm   3090 sec   (854 perm/sec)   p_kst 2.454799e-01   p_cons 3.812311e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 1.209646e-02	ci left: 3.788751e-02	ci right 3.834897e-02	k: 101012	n:2650000
KS ci ratio: 4.221575e-03	ci left: 2.449751e-01	ci right 2.460118e-01	k: 650557	n:2650000
OSTN   2650000 perm   3112 sec   (852 perm/sec)   p_kst 2.454932e-01   p_cons 3.811774e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 1.207210e-02	ci left: 3.789762e-02	ci right 3.835827e-02	k: 101419	n:2660000
KS ci ratio: 4.213756e-03	ci left: 2.449652e-01	ci right 2.460000e-01	k: 652983	n:2660000
OSTN   2660000 perm   3133 sec   (849 perm/sec)   p_kst 2.454823e-01   p_cons 3.812744e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 1.204771e-02	ci left: 3.790878e-02	ci right 3.836863e-02	k: 101829	n:2670000
KS ci ratio: 4.205661e-03	ci left: 2.449835e-01	ci right 2.460163e-01	k: 655484	n:2670000
OSTN   2670000 perm   3155 sec   (846 perm/sec)   p_kst 2.454996e-01   p_cons 3.813820e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 1.202462e-02	ci left: 3.791279e-02	ci right 3.837179e-02	k: 102220	n:2680000
KS ci ratio: 4.198154e-03	ci left: 2.449539e-01	ci right 2.459847e-01	k: 657857	n:2680000
OSTN   2680000 perm   3177 sec   (844 perm/sec)   p_kst 2.454690e-01   p_cons 3.814179e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 1.200209e-02	ci left: 3.791417e-02	ci right 3.837233e-02	k: 102604	n:2690000
KS ci ratio: 4.190536e-03	ci left: 2.449379e-01	ci right 2.459668e-01	k: 660266	n:2690000
OSTN   2690000 perm   3199 sec   (841 perm/sec)   p_kst 2.454520e-01   p_cons 3.814275e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 1.197903e-02	ci left: 3.791960e-02	ci right 3.837694e-02	k: 102999	n:2700000
KS ci ratio: 4.182821e-03	ci left: 2.449342e-01	ci right 2.459612e-01	k: 662708	n:2700000
OSTN   2700000 perm   3220 sec   (839 perm/sec)   p_kst 2.454474e-01   p_cons 3.814778e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 1.195910e-02	ci left: 3.790660e-02	ci right 3.836302e-02	k: 103344	n:2710000
KS ci ratio: 4.174757e-03	ci left: 2.449652e-01	ci right 2.459903e-01	k: 665244	n:2710000
OSTN   2710000 perm   3242 sec   (836 perm/sec)   p_kst 2.454775e-01   p_cons 3.813432e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 1.193825e-02	ci left: 3.789993e-02	ci right 3.835546e-02	k: 103706	n:2720000
KS ci ratio: 4.167121e-03	ci left: 2.449622e-01	ci right 2.459854e-01	k: 667688	n:2720000
OSTN   2720000 perm   3263 sec   (834 perm/sec)   p_kst 2.454735e-01   p_cons 3.812721e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 1.191478e-02	ci left: 3.791011e-02	ci right 3.836486e-02	k: 104114	n:2730000
KS ci ratio: 4.159620e-03	ci left: 2.449508e-01	ci right 2.459721e-01	k: 670109	n:2730000
OSTN   2730000 perm   3285 sec   (831 perm/sec)   p_kst 2.454612e-01   p_cons 3.813700e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 1.189398e-02	ci left: 3.790457e-02	ci right 3.835845e-02	k: 104479	n:2740000
KS ci ratio: 4.152197e-03	ci left: 2.449361e-01	ci right 2.459556e-01	k: 672521	n:2740000
OSTN   2740000 perm   3308 sec   (828 perm/sec)   p_kst 2.454456e-01   p_cons 3.813102e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 1.187106e-02	ci left: 3.791284e-02	ci right 3.836595e-02	k: 104882	n:2750000
KS ci ratio: 4.144500e-03	ci left: 2.449496e-01	ci right 2.459673e-01	k: 675010	n:2750000
OSTN   2750000 perm   3330 sec   (826 perm/sec)   p_kst 2.454582e-01   p_cons 3.813891e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 1.184886e-02	ci left: 3.791745e-02	ci right 3.836976e-02	k: 105275	n:2760000
KS ci ratio: 4.137020e-03	ci left: 2.449474e-01	ci right 2.459632e-01	k: 677456	n:2760000
OSTN   2760000 perm   3352 sec   (823 perm/sec)   p_kst 2.454551e-01   p_cons 3.814312e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 1.182526e-02	ci left: 3.793138e-02	ci right 3.838295e-02	k: 105694	n:2770000
KS ci ratio: 4.129459e-03	ci left: 2.449561e-01	ci right 2.459701e-01	k: 679932	n:2770000
OSTN   2770000 perm   3374 sec   (821 perm/sec)   p_kst 2.454628e-01   p_cons 3.815668e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 1.180343e-02	ci left: 3.793517e-02	ci right 3.838594e-02	k: 106085	n:2780000
KS ci ratio: 4.122016e-03	ci left: 2.449579e-01	ci right 2.459700e-01	k: 682389	n:2780000
OSTN   2780000 perm   3397 sec   (818 perm/sec)   p_kst 2.454637e-01   p_cons 3.816007e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 1.178252e-02	ci left: 3.793392e-02	ci right 3.838388e-02	k: 106462	n:2790000
KS ci ratio: 4.114796e-03	ci left: 2.449431e-01	ci right 2.459534e-01	k: 684800	n:2790000
OSTN   2790000 perm   3420 sec   (816 perm/sec)   p_kst 2.454480e-01   p_cons 3.815842e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 1.176316e-02	ci left: 3.792379e-02	ci right 3.837288e-02	k: 106814	n:2800000
KS ci ratio: 4.107543e-03	ci left: 2.449349e-01	ci right 2.459434e-01	k: 687229	n:2800000
OSTN   2800000 perm   3443 sec   (813 perm/sec)   p_kst 2.454389e-01   p_cons 3.814786e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 1.174224e-02	ci left: 3.792402e-02	ci right 3.837231e-02	k: 107195	n:2810000
KS ci ratio: 4.100355e-03	ci left: 2.449243e-01	ci right 2.459310e-01	k: 689651	n:2810000
OSTN   2810000 perm   3466 sec   (811 perm/sec)   p_kst 2.454274e-01   p_cons 3.814769e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 1.172041e-02	ci left: 3.793061e-02	ci right 3.837814e-02	k: 107594	n:2820000
KS ci ratio: 4.093150e-03	ci left: 2.449187e-01	ci right 2.459236e-01	k: 692087	n:2820000
OSTN   2820000 perm   3488 sec   (808 perm/sec)   p_kst 2.454209e-01   p_cons 3.815390e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 1.170112e-02	ci left: 3.792201e-02	ci right 3.836869e-02	k: 107950	n:2830000
KS ci ratio: 4.085577e-03	ci left: 2.449499e-01	ci right 2.459531e-01	k: 694627	n:2830000
OSTN   2830000 perm   3511 sec   (806 perm/sec)   p_kst 2.454512e-01   p_cons 3.814488e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 1.168109e-02	ci left: 3.791873e-02	ci right 3.836461e-02	k: 108321	n:2840000
KS ci ratio: 4.078279e-03	ci left: 2.449598e-01	ci right 2.459612e-01	k: 697107	n:2840000
OSTN   2840000 perm   3533 sec   (804 perm/sec)   p_kst 2.454602e-01   p_cons 3.814120e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 1.166021e-02	ci left: 3.792143e-02	ci right 3.836653e-02	k: 108709	n:2850000
KS ci ratio: 4.071182e-03	ci left: 2.449548e-01	ci right 2.459545e-01	k: 699545	n:2850000
OSTN   2850000 perm   3556 sec   (801 perm/sec)   p_kst 2.454544e-01   p_cons 3.814351e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 1.163961e-02	ci left: 3.792306e-02	ci right 3.836739e-02	k: 109094	n:2860000
KS ci ratio: 4.063808e-03	ci left: 2.449786e-01	ci right 2.459765e-01	k: 702065	n:2860000
OSTN   2860000 perm   3579 sec   (799 perm/sec)   p_kst 2.454773e-01   p_cons 3.814476e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 1.161956e-02	ci left: 3.792190e-02	ci right 3.836545e-02	k: 109471	n:2870000
KS ci ratio: 4.056656e-03	ci left: 2.449854e-01	ci right 2.459816e-01	k: 704537	n:2870000
OSTN   2870000 perm   3603 sec   (797 perm/sec)   p_kst 2.454833e-01   p_cons 3.814321e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 1.159994e-02	ci left: 3.791867e-02	ci right 3.836143e-02	k: 109842	n:2880000
KS ci ratio: 4.049534e-03	ci left: 2.449930e-01	ci right 2.459874e-01	k: 707011	n:2880000
OSTN   2880000 perm   3626 sec   (794 perm/sec)   p_kst 2.454899e-01   p_cons 3.813958e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 1.158157e-02	ci left: 3.790822e-02	ci right 3.835015e-02	k: 110192	n:2890000
KS ci ratio: 4.042552e-03	ci left: 2.449911e-01	ci right 2.459838e-01	k: 709458	n:2890000
OSTN   2890000 perm   3650 sec   (792 perm/sec)   p_kst 2.454872e-01   p_cons 3.812872e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 1.156182e-02	ci left: 3.790712e-02	ci right 3.834828e-02	k: 110569	n:2900000
KS ci ratio: 4.035530e-03	ci left: 2.449961e-01	ci right 2.459871e-01	k: 711925	n:2900000
OSTN   2900000 perm   3672 sec   (790 perm/sec)   p_kst 2.454914e-01   p_cons 3.812724e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 1.154227e-02	ci left: 3.790535e-02	ci right 3.834574e-02	k: 110944	n:2910000
KS ci ratio: 4.028564e-03	ci left: 2.449994e-01	ci right 2.459887e-01	k: 714387	n:2910000
OSTN   2910000 perm   3695 sec   (787 perm/sec)   p_kst 2.454938e-01   p_cons 3.812509e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 1.152455e-02	ci left: 3.789266e-02	ci right 3.833222e-02	k: 111287	n:2920000
KS ci ratio: 4.021823e-03	ci left: 2.449852e-01	ci right 2.459728e-01	k: 716798	n:2920000
OSTN   2920000 perm   3719 sec   (785 perm/sec)   p_kst 2.454788e-01   p_cons 3.811199e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 1.150514e-02	ci left: 3.789130e-02	ci right 3.833010e-02	k: 111663	n:2930000
KS ci ratio: 4.015027e-03	ci left: 2.449793e-01	ci right 2.459652e-01	k: 719233	n:2930000
OSTN   2930000 perm   3743 sec   (783 perm/sec)   p_kst 2.454720e-01   p_cons 3.811024e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 1.148535e-02	ci left: 3.789299e-02	ci right 3.833105e-02	k: 112048	n:2940000
KS ci ratio: 4.007799e-03	ci left: 2.450166e-01	ci right 2.460009e-01	k: 721795	n:2940000
OSTN   2940000 perm   3766 sec   (781 perm/sec)   p_kst 2.455085e-01   p_cons 3.811156e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 1.146773e-02	ci left: 3.788149e-02	ci right 3.831874e-02	k: 112394	n:2950000
KS ci ratio: 4.001062e-03	ci left: 2.450117e-01	ci right 2.459943e-01	k: 724233	n:2950000
OSTN   2950000 perm   3790 sec   (778 perm/sec)   p_kst 2.455027e-01   p_cons 3.809966e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 1.144987e-02	ci left: 3.787209e-02	ci right 3.830855e-02	k: 112746	n:2960000
KS ci ratio: 3.994404e-03	ci left: 2.450027e-01	ci right 2.459836e-01	k: 726659	n:2960000
OSTN   2960000 perm   3815 sec   (776 perm/sec)   p_kst 2.454929e-01   p_cons 3.808986e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 1.143084e-02	ci left: 3.787081e-02	ci right 3.830652e-02	k: 113122	n:2970000
KS ci ratio: 3.987619e-03	ci left: 2.450086e-01	ci right 2.459879e-01	k: 729129	n:2970000
OSTN   2970000 perm   3839 sec   (774 perm/sec)   p_kst 2.454980e-01   p_cons 3.808822e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 1.141253e-02	ci left: 3.786553e-02	ci right 3.830047e-02	k: 113486	n:2980000
KS ci ratio: 3.980631e-03	ci left: 2.450366e-01	ci right 2.460142e-01	k: 731665	n:2980000
OSTN   2980000 perm   3865 sec   (771 perm/sec)   p_kst 2.455252e-01   p_cons 3.808255e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 1.139279e-02	ci left: 3.786995e-02	ci right 3.830419e-02	k: 113879	n:2990000
KS ci ratio: 3.974056e-03	ci left: 2.450293e-01	ci right 2.460053e-01	k: 734096	n:2990000
OSTN   2990000 perm   3889 sec   (769 perm/sec)   p_kst 2.455171e-01   p_cons 3.808662e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 1.137389e-02	ci left: 3.786969e-02	ci right 3.830320e-02	k: 114258	n:3000000
KS ci ratio: 3.967424e-03	ci left: 2.450304e-01	ci right 2.460048e-01	k: 736552	n:3000000
OSTN   3000000 perm   3914 sec   (767 perm/sec)   p_kst 2.455173e-01   p_cons 3.808600e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 1.135590e-02	ci left: 3.786413e-02	ci right 3.829689e-02	k: 114621	n:3010000
KS ci ratio: 3.960512e-03	ci left: 2.450607e-01	ci right 2.460335e-01	k: 739096	n:3010000
OSTN   3010000 perm   3938 sec   (764 perm/sec)   p_kst 2.455468e-01   p_cons 3.808007e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 1.133651e-02	ci left: 3.786819e-02	ci right 3.830025e-02	k: 115013	n:3020000
KS ci ratio: 3.954291e-03	ci left: 2.450296e-01	ci right 2.460007e-01	k: 741455	n:3020000
OSTN   3020000 perm   3964 sec   (762 perm/sec)   p_kst 2.455149e-01   p_cons 3.808377e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 1.131757e-02	ci left: 3.786991e-02	ci right 3.830127e-02	k: 115398	n:3030000
KS ci ratio: 3.947609e-03	ci left: 2.450445e-01	ci right 2.460141e-01	k: 743953	n:3030000
OSTN   3030000 perm   3989 sec   (760 perm/sec)   p_kst 2.455290e-01   p_cons 3.808515e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 1.129954e-02	ci left: 3.786638e-02	ci right 3.829700e-02	k: 115767	n:3040000
KS ci ratio: 3.941046e-03	ci left: 2.450515e-01	ci right 2.460194e-01	k: 746427	n:3040000
OSTN   3040000 perm   4013 sec   (757 perm/sec)   p_kst 2.455352e-01   p_cons 3.808125e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 1.127978e-02	ci left: 3.787464e-02	ci right 3.830460e-02	k: 116172	n:3050000
KS ci ratio: 3.934264e-03	ci left: 2.450819e-01	ci right 2.460484e-01	k: 748973	n:3050000
OSTN   3050000 perm   4039 sec   (755 perm/sec)   p_kst 2.455649e-01   p_cons 3.808918e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 1.126133e-02	ci left: 3.787502e-02	ci right 3.830428e-02	k: 116553	n:3060000
KS ci ratio: 3.927701e-03	ci left: 2.450949e-01	ci right 2.460598e-01	k: 751466	n:3060000
OSTN   3060000 perm   4063 sec   (753 perm/sec)   p_kst 2.455771e-01   p_cons 3.808922e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 1.124422e-02	ci left: 3.786729e-02	ci right 3.829580e-02	k: 116909	n:3070000
KS ci ratio: 3.921009e-03	ci left: 2.451231e-01	ci right 2.460865e-01	k: 754006	n:3070000
OSTN   3070000 perm   4088 sec   (751 perm/sec)   p_kst 2.456046e-01   p_cons 3.808111e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 1.122619e-02	ci left: 3.786608e-02	ci right 3.829388e-02	k: 117285	n:3080000
KS ci ratio: 3.914601e-03	ci left: 2.451275e-01	ci right 2.460892e-01	k: 756473	n:3080000
OSTN   3080000 perm   4114 sec   (749 perm/sec)   p_kst 2.456081e-01   p_cons 3.807955e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 1.120889e-02	ci left: 3.786068e-02	ci right 3.828776e-02	k: 117648	n:3090000
KS ci ratio: 3.908043e-03	ci left: 2.451489e-01	ci right 2.461092e-01	k: 758993	n:3090000
OSTN   3090000 perm   4139 sec   (747 perm/sec)   p_kst 2.456288e-01   p_cons 3.807379e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 1.119207e-02	ci left: 3.785274e-02	ci right 3.827909e-02	k: 118003	n:3100000
KS ci ratio: 3.901430e-03	ci left: 2.451786e-01	ci right 2.461373e-01	k: 761539	n:3100000
OSTN   3100000 perm   4164 sec   (744 perm/sec)   p_kst 2.456577e-01   p_cons 3.806548e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 1.117365e-02	ci left: 3.785576e-02	ci right 3.828144e-02	k: 118392	n:3110000
KS ci ratio: 3.895181e-03	ci left: 2.451766e-01	ci right 2.461338e-01	k: 763987	n:3110000
OSTN   3110000 perm   4190 sec   (742 perm/sec)   p_kst 2.456550e-01   p_cons 3.806817e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 1.115576e-02	ci left: 3.785588e-02	ci right 3.828087e-02	k: 118772	n:3120000
KS ci ratio: 3.889074e-03	ci left: 2.451641e-01	ci right 2.461197e-01	k: 766402	n:3120000
OSTN   3120000 perm   4216 sec   (740 perm/sec)   p_kst 2.456417e-01   p_cons 3.806795e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 1.113801e-02	ci left: 3.785569e-02	ci right 3.827999e-02	k: 119151	n:3130000
KS ci ratio: 3.882744e-03	ci left: 2.451756e-01	ci right 2.461297e-01	k: 768892	n:3130000
OSTN   3130000 perm   4241 sec   (738 perm/sec)   p_kst 2.456524e-01   p_cons 3.806741e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 1.112063e-02	ci left: 3.785358e-02	ci right 3.827720e-02	k: 119524	n:3140000
KS ci ratio: 3.876555e-03	ci left: 2.451765e-01	ci right 2.461291e-01	k: 771349	n:3140000
OSTN   3140000 perm   4267 sec   (736 perm/sec)   p_kst 2.456525e-01   p_cons 3.806497e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 1.110420e-02	ci left: 3.784580e-02	ci right 3.826870e-02	k: 119879	n:3150000
KS ci ratio: 3.870206e-03	ci left: 2.451955e-01	ci right 2.461466e-01	k: 773863	n:3150000
OSTN   3150000 perm   4293 sec   (734 perm/sec)   p_kst 2.456708e-01   p_cons 3.805683e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 1.108755e-02	ci left: 3.783996e-02	ci right 3.826216e-02	k: 120240	n:3160000
KS ci ratio: 3.863796e-03	ci left: 2.452232e-01	ci right 2.461728e-01	k: 776405	n:3160000
OSTN   3160000 perm   4319 sec   (732 perm/sec)   p_kst 2.456978e-01   p_cons 3.805063e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 1.106912e-02	ci left: 3.784642e-02	ci right 3.826799e-02	k: 120640	n:3170000
KS ci ratio: 3.857874e-03	ci left: 2.452069e-01	ci right 2.461550e-01	k: 778808	n:3170000
OSTN   3170000 perm   4345 sec   (730 perm/sec)   p_kst 2.456808e-01   p_cons 3.805678e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 1.105183e-02	ci left: 3.784595e-02	ci right 3.826684e-02	k: 121018	n:3180000
KS ci ratio: 3.851842e-03	ci left: 2.452040e-01	ci right 2.461506e-01	k: 781253	n:3180000
OSTN   3180000 perm   4371 sec   (728 perm/sec)   p_kst 2.456770e-01   p_cons 3.805597e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 1.103480e-02	ci left: 3.784423e-02	ci right 3.826445e-02	k: 121392	n:3190000
KS ci ratio: 3.845669e-03	ci left: 2.452173e-01	ci right 2.461625e-01	k: 783750	n:3190000
OSTN   3190000 perm   4396 sec   (726 perm/sec)   p_kst 2.456897e-01   p_cons 3.805392e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 1.101823e-02	ci left: 3.784002e-02	ci right 3.825957e-02	k: 121758	n:3200000
KS ci ratio: 3.839652e-03	ci left: 2.452184e-01	ci right 2.461621e-01	k: 786208	n:3200000
OSTN   3200000 perm   4422 sec   (724 perm/sec)   p_kst 2.456900e-01   p_cons 3.804938e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 1.100075e-02	ci left: 3.784237e-02	ci right 3.826127e-02	k: 122145	n:3210000
KS ci ratio: 3.833438e-03	ci left: 2.452413e-01	ci right 2.461835e-01	k: 788736	n:3210000
OSTN   3210000 perm   4449 sec   (722 perm/sec)   p_kst 2.457121e-01   p_cons 3.805140e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 1.098340e-02	ci left: 3.784439e-02	ci right 3.826265e-02	k: 122531	n:3220000
KS ci ratio: 3.827580e-03	ci left: 2.452323e-01	ci right 2.461731e-01	k: 791162	n:3220000
OSTN   3220000 perm   4475 sec   (720 perm/sec)   p_kst 2.457025e-01   p_cons 3.805311e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 1.096747e-02	ci left: 3.783745e-02	ci right 3.825502e-02	k: 122888	n:3230000
KS ci ratio: 3.821507e-03	ci left: 2.452470e-01	ci right 2.461863e-01	k: 793664	n:3230000
OSTN   3230000 perm   4500 sec   (718 perm/sec)   p_kst 2.457164e-01   p_cons 3.804582e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 1.095083e-02	ci left: 3.783578e-02	ci right 3.825270e-02	k: 123262	n:3240000
KS ci ratio: 3.815609e-03	ci left: 2.452474e-01	ci right 2.461852e-01	k: 796120	n:3240000
OSTN   3240000 perm   4527 sec   (716 perm/sec)   p_kst 2.457160e-01   p_cons 3.804383e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 1.093413e-02	ci left: 3.783505e-02	ci right 3.825131e-02	k: 123639	n:3250000
KS ci ratio: 3.809896e-03	ci left: 2.452323e-01	ci right 2.461687e-01	k: 798526	n:3250000
OSTN   3250000 perm   4554 sec   (714 perm/sec)   p_kst 2.457003e-01   p_cons 3.804277e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 1.091714e-02	ci left: 3.783676e-02	ci right 3.825240e-02	k: 124024	n:3260000
KS ci ratio: 3.804092e-03	ci left: 2.452288e-01	ci right 2.461637e-01	k: 800969	n:3260000
OSTN   3260000 perm   4581 sec   (712 perm/sec)   p_kst 2.456960e-01   p_cons 3.804417e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 1.090023e-02	ci left: 3.783847e-02	ci right 3.825348e-02	k: 124409	n:3270000
KS ci ratio: 3.798202e-03	ci left: 2.452362e-01	ci right 2.461697e-01	k: 803448	n:3270000
OSTN   3270000 perm   4607 sec   (710 perm/sec)   p_kst 2.457028e-01   p_cons 3.804557e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 1.088416e-02	ci left: 3.783500e-02	ci right 3.824935e-02	k: 124777	n:3280000
KS ci ratio: 3.792202e-03	ci left: 2.452570e-01	ci right 2.461891e-01	k: 805971	n:3280000
OSTN   3280000 perm   4634 sec   (708 perm/sec)   p_kst 2.457229e-01   p_cons 3.804177e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 1.086749e-02	ci left: 3.783610e-02	ci right 3.824982e-02	k: 125160	n:3290000
KS ci ratio: 3.786596e-03	ci left: 2.452419e-01	ci right 2.461726e-01	k: 808376	n:3290000
OSTN   3290000 perm   4661 sec   (706 perm/sec)   p_kst 2.457070e-01   p_cons 3.804255e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 1.084987e-02	ci left: 3.784414e-02	ci right 3.825728e-02	k: 125566	n:3300000
KS ci ratio: 3.780917e-03	ci left: 2.452365e-01	ci right 2.461658e-01	k: 810813	n:3300000
OSTN   3300000 perm   4688 sec   (704 perm/sec)   p_kst 2.457009e-01   p_cons 3.805030e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 1.083335e-02	ci left: 3.784520e-02	ci right 3.825772e-02	k: 125949	n:3310000
KS ci ratio: 3.775130e-03	ci left: 2.452441e-01	ci right 2.461720e-01	k: 813293	n:3310000
OSTN   3310000 perm   4715 sec   (702 perm/sec)   p_kst 2.457079e-01   p_cons 3.805106e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 1.081829e-02	ci left: 3.783695e-02	ci right 3.824880e-02	k: 126301	n:3320000
KS ci ratio: 3.769447e-03	ci left: 2.452442e-01	ci right 2.461707e-01	k: 815748	n:3320000
OSTN   3320000 perm   4742 sec   (700 perm/sec)   p_kst 2.457072e-01   p_cons 3.804247e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 1.080117e-02	ci left: 3.784312e-02	ci right 3.825438e-02	k: 126701	n:3330000
KS ci ratio: 3.763985e-03	ci left: 2.452251e-01	ci right 2.461501e-01	k: 818139	n:3330000
OSTN   3330000 perm   4769 sec   (698 perm/sec)   p_kst 2.456874e-01   p_cons 3.804835e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 1.078554e-02	ci left: 3.783970e-02	ci right 3.825032e-02	k: 127069	n:3340000
KS ci ratio: 3.758285e-03	ci left: 2.452318e-01	ci right 2.461555e-01	k: 820616	n:3340000
OSTN   3340000 perm   4796 sec   (696 perm/sec)   p_kst 2.456934e-01   p_cons 3.804461e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 1.076857e-02	ci left: 3.784583e-02	ci right 3.825587e-02	k: 127469	n:3350000
KS ci ratio: 3.752689e-03	ci left: 2.452307e-01	ci right 2.461530e-01	k: 823067	n:3350000
OSTN   3350000 perm   4823 sec   (695 perm/sec)   p_kst 2.456916e-01   p_cons 3.805045e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 1.075321e-02	ci left: 3.784153e-02	ci right 3.825094e-02	k: 127834	n:3360000
KS ci ratio: 3.746899e-03	ci left: 2.452514e-01	ci right 2.461723e-01	k: 825591	n:3360000
OSTN   3360000 perm   4850 sec   (693 perm/sec)   p_kst 2.457116e-01   p_cons 3.804583e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 1.073870e-02	ci left: 3.783193e-02	ci right 3.824068e-02	k: 128181	n:3370000
KS ci ratio: 3.741264e-03	ci left: 2.452591e-01	ci right 2.461787e-01	k: 828072	n:3370000
OSTN   3370000 perm   4878 sec   (691 perm/sec)   p_kst 2.457187e-01   p_cons 3.803591e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 1.072208e-02	ci left: 3.783714e-02	ci right 3.824531e-02	k: 128578	n:3380000
KS ci ratio: 3.735923e-03	ci left: 2.452402e-01	ci right 2.461584e-01	k: 830463	n:3380000
OSTN   3380000 perm   4905 sec   (689 perm/sec)   p_kst 2.456991e-01   p_cons 3.804083e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 1.070684e-02	ci left: 3.783350e-02	ci right 3.824104e-02	k: 128945	n:3390000
KS ci ratio: 3.730411e-03	ci left: 2.452406e-01	ci right 2.461575e-01	k: 832919	n:3390000
OSTN   3390000 perm   4933 sec   (687 perm/sec)   p_kst 2.456988e-01   p_cons 3.803687e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 1.069011e-02	ci left: 3.784043e-02	ci right 3.824741e-02	k: 129348	n:3400000
KS ci ratio: 3.725034e-03	ci left: 2.452301e-01	ci right 2.461456e-01	k: 835338	n:3400000
OSTN   3400000 perm   4961 sec   (685 perm/sec)   p_kst 2.456876e-01   p_cons 3.804353e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 1.067380e-02	ci left: 3.784499e-02	ci right 3.825139e-02	k: 129743	n:3410000
KS ci ratio: 3.719667e-03	ci left: 2.452209e-01	ci right 2.461350e-01	k: 837761	n:3410000
OSTN   3410000 perm   4994 sec   (683 perm/sec)   p_kst 2.456777e-01   p_cons 3.804780e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 1.065688e-02	ci left: 3.785419e-02	ci right 3.826004e-02	k: 130154	n:3420000
KS ci ratio: 3.714236e-03	ci left: 2.452204e-01	ci right 2.461332e-01	k: 840214	n:3420000
OSTN   3420000 perm   5022 sec   (681 perm/sec)   p_kst 2.456766e-01   p_cons 3.805673e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 1.064136e-02	ci left: 3.785432e-02	ci right 3.825958e-02	k: 130534	n:3430000
KS ci ratio: 3.708654e-03	ci left: 2.452375e-01	ci right 2.461490e-01	k: 842727	n:3430000
OSTN   3430000 perm   5050 sec   (679 perm/sec)   p_kst 2.456930e-01   p_cons 3.805656e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 1.062506e-02	ci left: 3.786025e-02	ci right 3.826495e-02	k: 130934	n:3440000
KS ci ratio: 3.703559e-03	ci left: 2.452082e-01	ci right 2.461183e-01	k: 845081	n:3440000
OSTN   3440000 perm   5078 sec   (677 perm/sec)   p_kst 2.456631e-01   p_cons 3.806221e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 1.060909e-02	ci left: 3.786441e-02	ci right 3.826854e-02	k: 131328	n:3450000
KS ci ratio: 3.698313e-03	ci left: 2.451963e-01	ci right 2.461050e-01	k: 847494	n:3450000
OSTN   3450000 perm   5122 sec   (674 perm/sec)   p_kst 2.456504e-01   p_cons 3.806609e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 1.059374e-02	ci left: 3.786480e-02	ci right 3.826835e-02	k: 131709	n:3460000
KS ci ratio: 3.692958e-03	ci left: 2.451976e-01	ci right 2.461051e-01	k: 849953	n:3460000
OSTN   3460000 perm   5150 sec   (672 perm/sec)   p_kst 2.456512e-01   p_cons 3.806618e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 1.057861e-02	ci left: 3.786404e-02	ci right 3.826699e-02	k: 132086	n:3470000
KS ci ratio: 3.687824e-03	ci left: 2.451791e-01	ci right 2.460853e-01	k: 852343	n:3470000
OSTN   3470000 perm   5179 sec   (670 perm/sec)   p_kst 2.456320e-01   p_cons 3.806513e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 1.056414e-02	ci left: 3.785927e-02	ci right 3.826162e-02	k: 132449	n:3480000
KS ci ratio: 3.682474e-03	ci left: 2.451846e-01	ci right 2.460894e-01	k: 854816	n:3480000
OSTN   3480000 perm   5207 sec   (668 perm/sec)   p_kst 2.456368e-01   p_cons 3.806006e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 1.054947e-02	ci left: 3.785624e-02	ci right 3.825800e-02	k: 132818	n:3490000
KS ci ratio: 3.677258e-03	ci left: 2.451788e-01	ci right 2.460823e-01	k: 857250	n:3490000
OSTN   3490000 perm   5235 sec   (667 perm/sec)   p_kst 2.456304e-01   p_cons 3.805673e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 1.053412e-02	ci left: 3.785836e-02	ci right 3.825955e-02	k: 133205	n:3500000
KS ci ratio: 3.672109e-03	ci left: 2.451685e-01	ci right 2.460707e-01	k: 859668	n:3500000
OSTN   3500000 perm   5263 sec   (665 perm/sec)   p_kst 2.456194e-01   p_cons 3.805857e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 1.052011e-02	ci left: 3.785166e-02	ci right 3.825224e-02	k: 133561	n:3510000
KS ci ratio: 3.666836e-03	ci left: 2.451731e-01	ci right 2.460740e-01	k: 862138	n:3510000
OSTN   3510000 perm   5293 sec   (663 perm/sec)   p_kst 2.456234e-01   p_cons 3.805157e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 1.050408e-02	ci left: 3.785944e-02	ci right 3.825950e-02	k: 133968	n:3520000
KS ci ratio: 3.661736e-03	ci left: 2.451623e-01	ci right 2.460620e-01	k: 864554	n:3520000
OSTN   3520000 perm   5321 sec   (661 perm/sec)   p_kst 2.456119e-01   p_cons 3.805909e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 1.048905e-02	ci left: 3.786069e-02	ci right 3.826018e-02	k: 134352	n:3530000
KS ci ratio: 3.656669e-03	ci left: 2.451505e-01	ci right 2.460488e-01	k: 866966	n:3530000
OSTN   3530000 perm   5376 sec   (657 perm/sec)   p_kst 2.455994e-01   p_cons 3.806006e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 1.047421e-02	ci left: 3.786108e-02	ci right 3.826001e-02	k: 134733	n:3540000
KS ci ratio: 3.651234e-03	ci left: 2.451782e-01	ci right 2.460753e-01	k: 869518	n:3540000
OSTN   3540000 perm   5405 sec   (655 perm/sec)   p_kst 2.456266e-01   p_cons 3.806017e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 1.045979e-02	ci left: 3.785895e-02	ci right 3.825730e-02	k: 135105	n:3550000
KS ci ratio: 3.645830e-03	ci left: 2.452049e-01	ci right 2.461008e-01	k: 872067	n:3550000
OSTN   3550000 perm   5433 sec   (653 perm/sec)   p_kst 2.456527e-01   p_cons 3.805775e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 1.044480e-02	ci left: 3.786131e-02	ci right 3.825911e-02	k: 135493	n:3560000
KS ci ratio: 3.640614e-03	ci left: 2.452150e-01	ci right 2.461096e-01	k: 874557	n:3560000
OSTN   3560000 perm   5462 sec   (652 perm/sec)   p_kst 2.456621e-01   p_cons 3.805983e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 1.042954e-02	ci left: 3.786589e-02	ci right 3.826315e-02	k: 135889	n:3570000
KS ci ratio: 3.635623e-03	ci left: 2.452042e-01	ci right 2.460976e-01	k: 876973	n:3570000
OSTN   3570000 perm   5491 sec   (650 perm/sec)   p_kst 2.456507e-01   p_cons 3.806415e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 1.041543e-02	ci left: 3.786292e-02	ci right 3.825961e-02	k: 136258	n:3580000
KS ci ratio: 3.630625e-03	ci left: 2.451963e-01	ci right 2.460884e-01	k: 879399	n:3580000
OSTN   3580000 perm   5521 sec   (648 perm/sec)   p_kst 2.456422e-01   p_cons 3.806089e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 1.040058e-02	ci left: 3.786553e-02	ci right 3.826168e-02	k: 136647	n:3590000
KS ci ratio: 3.625659e-03	ci left: 2.451874e-01	ci right 2.460782e-01	k: 881821	n:3590000
OSTN   3590000 perm   5550 sec   (647 perm/sec)   p_kst 2.456326e-01   p_cons 3.806323e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 1.038690e-02	ci left: 3.786036e-02	ci right 3.825594e-02	k: 137008	n:3600000
KS ci ratio: 3.620678e-03	ci left: 2.451821e-01	ci right 2.460717e-01	k: 884256	n:3600000
OSTN   3600000 perm   5579 sec   (645 perm/sec)   p_kst 2.456267e-01   p_cons 3.805778e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 1.037327e-02	ci left: 3.785523e-02	ci right 3.825022e-02	k: 137369	n:3610000
KS ci ratio: 3.615460e-03	ci left: 2.452031e-01	ci right 2.460915e-01	k: 886786	n:3610000
OSTN   3610000 perm   5609 sec   (644 perm/sec)   p_kst 2.456471e-01   p_cons 3.805235e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 1.035946e-02	ci left: 3.785177e-02	ci right 3.824621e-02	k: 137736	n:3620000
KS ci ratio: 3.610408e-03	ci left: 2.452094e-01	ci right 2.460965e-01	k: 889263	n:3620000
OSTN   3620000 perm   5638 sec   (642 perm/sec)   p_kst 2.456528e-01   p_cons 3.804862e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 1.034520e-02	ci left: 3.785191e-02	ci right 3.824580e-02	k: 138116	n:3630000
KS ci ratio: 3.605465e-03	ci left: 2.452065e-01	ci right 2.460925e-01	k: 891707	n:3630000
OSTN   3630000 perm   5667 sec   (641 perm/sec)   p_kst 2.456493e-01   p_cons 3.804848e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 1.033104e-02	ci left: 3.785177e-02	ci right 3.824512e-02	k: 138495	n:3640000
KS ci ratio: 3.600369e-03	ci left: 2.452216e-01	ci right 2.461063e-01	k: 894216	n:3640000
OSTN   3640000 perm   5697 sec   (639 perm/sec)   p_kst 2.456637e-01   p_cons 3.804808e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 1.031690e-02	ci left: 3.785191e-02	ci right 3.824471e-02	k: 138875	n:3650000
KS ci ratio: 3.595658e-03	ci left: 2.451990e-01	ci right 2.460825e-01	k: 896588	n:3650000
OSTN   3650000 perm   5726 sec   (637 perm/sec)   p_kst 2.456405e-01   p_cons 3.804795e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 1.030220e-02	ci left: 3.785641e-02	ci right 3.824870e-02	k: 139271	n:3660000
KS ci ratio: 3.590712e-03	ci left: 2.452028e-01	ci right 2.460851e-01	k: 899056	n:3660000
OSTN   3660000 perm   5756 sec   (636 perm/sec)   p_kst 2.456437e-01   p_cons 3.805219e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 1.028894e-02	ci left: 3.785110e-02	ci right 3.824282e-02	k: 139631	n:3670000
KS ci ratio: 3.585562e-03	ci left: 2.452297e-01	ci right 2.461108e-01	k: 901609	n:3670000
OSTN   3670000 perm   5785 sec   (634 perm/sec)   p_kst 2.456700e-01   p_cons 3.804659e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 1.027493e-02	ci left: 3.785151e-02	ci right 3.824270e-02	k: 140012	n:3680000
KS ci ratio: 3.580689e-03	ci left: 2.452301e-01	ci right 2.461100e-01	k: 904065	n:3680000
OSTN   3680000 perm   5815 sec   (633 perm/sec)   p_kst 2.456698e-01   p_cons 3.804674e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 1.026086e-02	ci left: 3.785273e-02	ci right 3.824339e-02	k: 140396	n:3690000
KS ci ratio: 3.575925e-03	ci left: 2.452213e-01	ci right 2.461000e-01	k: 906487	n:3690000
OSTN   3690000 perm   5845 sec   (631 perm/sec)   p_kst 2.456604e-01   p_cons 3.804770e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 1.024678e-02	ci left: 3.785448e-02	ci right 3.824462e-02	k: 140782	n:3700000
KS ci ratio: 3.571289e-03	ci left: 2.452012e-01	ci right 2.460787e-01	k: 908867	n:3700000
OSTN   3700000 perm   5876 sec   (630 perm/sec)   p_kst 2.456397e-01   p_cons 3.804919e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 1.023219e-02	ci left: 3.786025e-02	ci right 3.824990e-02	k: 141183	n:3710000
KS ci ratio: 3.566575e-03	ci left: 2.451912e-01	ci right 2.460675e-01	k: 911284	n:3710000
OSTN   3710000 perm   5907 sec   (628 perm/sec)   p_kst 2.456291e-01   p_cons 3.805472e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 1.021889e-02	ci left: 3.785715e-02	ci right 3.824626e-02	k: 141551	n:3720000
KS ci ratio: 3.561812e-03	ci left: 2.451882e-01	ci right 2.460633e-01	k: 913727	n:3720000
OSTN   3720000 perm   5937 sec   (627 perm/sec)   p_kst 2.456255e-01   p_cons 3.805134e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 1.020554e-02	ci left: 3.785487e-02	ci right 3.824344e-02	k: 141922	n:3730000
KS ci ratio: 3.556868e-03	ci left: 2.452061e-01	ci right 2.460801e-01	k: 916248	n:3730000
OSTN   3730000 perm   6003 sec   (621 perm/sec)   p_kst 2.456429e-01   p_cons 3.804879e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 1.019142e-02	ci left: 3.785846e-02	ci right 3.824653e-02	k: 142315	n:3740000
KS ci ratio: 3.552092e-03	ci left: 2.452084e-01	ci right 2.460813e-01	k: 918711	n:3740000
OSTN   3740000 perm   6033 sec   (620 perm/sec)   p_kst 2.456447e-01   p_cons 3.805214e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 1.017803e-02	ci left: 3.785725e-02	ci right 3.824479e-02	k: 142690	n:3750000
KS ci ratio: 3.547275e-03	ci left: 2.452172e-01	ci right 2.460888e-01	k: 921198	n:3750000
OSTN   3750000 perm   6064 sec   (618 perm/sec)   p_kst 2.456528e-01   p_cons 3.805067e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 1.016465e-02	ci left: 3.785631e-02	ci right 3.824333e-02	k: 143066	n:3760000
KS ci ratio: 3.542594e-03	ci left: 2.452136e-01	ci right 2.460841e-01	k: 923639	n:3760000
OSTN   3760000 perm   6094 sec   (617 perm/sec)   p_kst 2.456487e-01   p_cons 3.804947e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 1.015129e-02	ci left: 3.785565e-02	ci right 3.824215e-02	k: 143443	n:3770000
KS ci ratio: 3.537965e-03	ci left: 2.452066e-01	ci right 2.460760e-01	k: 926067	n:3770000
OSTN   3770000 perm   6125 sec   (615 perm/sec)   p_kst 2.456411e-01   p_cons 3.804854e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 1.013820e-02	ci left: 3.785340e-02	ci right 3.823937e-02	k: 143814	n:3780000
KS ci ratio: 3.533263e-03	ci left: 2.452092e-01	ci right 2.460774e-01	k: 928531	n:3780000
OSTN   3780000 perm   6156 sec   (614 perm/sec)   p_kst 2.456431e-01   p_cons 3.804603e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 1.012593e-02	ci left: 3.784563e-02	ci right 3.823106e-02	k: 144164	n:3790000
KS ci ratio: 3.528592e-03	ci left: 2.452105e-01	ci right 2.460775e-01	k: 930990	n:3790000
OSTN   3790000 perm   6187 sec   (613 perm/sec)   p_kst 2.456438e-01   p_cons 3.803799e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 1.011272e-02	ci left: 3.784500e-02	ci right 3.822992e-02	k: 144541	n:3800000
KS ci ratio: 3.523827e-03	ci left: 2.452236e-01	ci right 2.460895e-01	k: 933494	n:3800000
OSTN   3800000 perm   6218 sec   (611 perm/sec)   p_kst 2.456563e-01   p_cons 3.803711e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 1.010004e-02	ci left: 3.784096e-02	ci right 3.822535e-02	k: 144905	n:3810000
KS ci ratio: 3.519251e-03	ci left: 2.452187e-01	ci right 2.460835e-01	k: 935930	n:3810000
OSTN   3810000 perm   6250 sec   (610 perm/sec)   p_kst 2.456509e-01   p_cons 3.803281e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 1.008704e-02	ci left: 3.783956e-02	ci right 3.822344e-02	k: 145279	n:3820000
KS ci ratio: 3.514725e-03	ci left: 2.452105e-01	ci right 2.460741e-01	k: 938353	n:3820000
OSTN   3820000 perm   6281 sec   (608 perm/sec)   p_kst 2.456421e-01   p_cons 3.803115e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 1.007337e-02	ci left: 3.784338e-02	ci right 3.822677e-02	k: 145673	n:3830000
KS ci ratio: 3.510058e-03	ci left: 2.452191e-01	ci right 2.460816e-01	k: 940840	n:3830000
OSTN   3830000 perm   6312 sec   (607 perm/sec)   p_kst 2.456501e-01   p_cons 3.803473e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 1.006065e-02	ci left: 3.784068e-02	ci right 3.822356e-02	k: 146042	n:3840000
KS ci ratio: 3.505629e-03	ci left: 2.452044e-01	ci right 2.460658e-01	k: 943238	n:3840000
OSTN   3840000 perm   6344 sec   (605 perm/sec)   p_kst 2.456349e-01   p_cons 3.803177e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 1.004755e-02	ci left: 3.784110e-02	ci right 3.822349e-02	k: 146423	n:3850000
KS ci ratio: 3.501098e-03	ci left: 2.452023e-01	ci right 2.460625e-01	k: 945684	n:3850000
OSTN   3850000 perm   6375 sec   (604 perm/sec)   p_kst 2.456322e-01   p_cons 3.803195e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 1.003450e-02	ci left: 3.784153e-02	ci right 3.822341e-02	k: 146804	n:3860000
KS ci ratio: 3.496744e-03	ci left: 2.451833e-01	ci right 2.460424e-01	k: 948065	n:3860000
OSTN   3860000 perm   6407 sec   (602 perm/sec)   p_kst 2.456127e-01   p_cons 3.803212e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 1.002140e-02	ci left: 3.784272e-02	ci right 3.822412e-02	k: 147188	n:3870000
KS ci ratio: 3.492326e-03	ci left: 2.451730e-01	ci right 2.460310e-01	k: 950479	n:3870000
OSTN   3870000 perm   6438 sec   (601 perm/sec)   p_kst 2.456018e-01   p_cons 3.803307e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 1.000842e-02	ci left: 3.784340e-02	ci right 3.822430e-02	k: 147570	n:3880000
KS ci ratio: 3.487833e-03	ci left: 2.451725e-01	ci right 2.460294e-01	k: 952931	n:3880000
OSTN   3880000 perm   6469 sec   (600 perm/sec)   p_kst 2.456008e-01   p_cons 3.803351e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 9.996013e-03	ci left: 3.784022e-02	ci right 3.822062e-02	k: 147937	n:3890000
KS ci ratio: 3.483228e-03	ci left: 2.451857e-01	ci right 2.460414e-01	k: 955436	n:3890000
OSTN   3890000 perm   6502 sec   (598 perm/sec)   p_kst 2.456134e-01   p_cons 3.803008e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 9.983096e-03	ci left: 3.784115e-02	ci right 3.822107e-02	k: 148320	n:3900000
KS ci ratio: 3.478789e-03	ci left: 2.451831e-01	ci right 2.460378e-01	k: 957880	n:3900000
OSTN   3900000 perm   6533 sec   (597 perm/sec)   p_kst 2.456103e-01   p_cons 3.803077e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 9.970437e-03	ci left: 3.784055e-02	ci right 3.821998e-02	k: 148697	n:3910000
KS ci ratio: 3.474287e-03	ci left: 2.451890e-01	ci right 2.460426e-01	k: 960357	n:3910000
OSTN   3910000 perm   6565 sec   (596 perm/sec)   p_kst 2.456156e-01   p_cons 3.802992e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 9.958034e-03	ci left: 3.783843e-02	ci right 3.821736e-02	k: 149068	n:3920000
KS ci ratio: 3.469894e-03	ci left: 2.451852e-01	ci right 2.460377e-01	k: 962796	n:3920000
OSTN   3920000 perm   6597 sec   (594 perm/sec)   p_kst 2.456112e-01   p_cons 3.802755e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 9.945851e-03	ci left: 3.783504e-02	ci right 3.821347e-02	k: 149434	n:3930000
KS ci ratio: 3.465501e-03	ci left: 2.451831e-01	ci right 2.460345e-01	k: 965242	n:3930000
OSTN   3930000 perm   6628 sec   (593 perm/sec)   p_kst 2.456087e-01   p_cons 3.802392e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 9.933229e-03	ci left: 3.783522e-02	ci right 3.821317e-02	k: 149814	n:3940000
KS ci ratio: 3.460906e-03	ci left: 2.452045e-01	ci right 2.460548e-01	k: 967780	n:3940000
OSTN   3940000 perm   6661 sec   (592 perm/sec)   p_kst 2.456294e-01   p_cons 3.802386e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 9.920072e-03	ci left: 3.783970e-02	ci right 3.821718e-02	k: 150211	n:3950000
KS ci ratio: 3.456445e-03	ci left: 2.452133e-01	ci right 2.460625e-01	k: 970269	n:3950000
OSTN   3950000 perm   6692 sec   (590 perm/sec)   p_kst 2.456377e-01   p_cons 3.802810e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 9.907822e-03	ci left: 3.783785e-02	ci right 3.821485e-02	k: 150583	n:3960000
KS ci ratio: 3.452152e-03	ci left: 2.452059e-01	ci right 2.460541e-01	k: 972694	n:3960000
OSTN   3960000 perm   6724 sec   (589 perm/sec)   p_kst 2.456298e-01   p_cons 3.802601e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 9.895209e-03	ci left: 3.783902e-02	ci right 3.821555e-02	k: 150967	n:3970000
KS ci ratio: 3.447797e-03	ci left: 2.452069e-01	ci right 2.460540e-01	k: 975152	n:3970000
OSTN   3970000 perm   6757 sec   (588 perm/sec)   p_kst 2.456302e-01   p_cons 3.802695e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 9.883322e-03	ci left: 3.783518e-02	ci right 3.821122e-02	k: 151331	n:3980000
KS ci ratio: 3.443438e-03	ci left: 2.452101e-01	ci right 2.460561e-01	k: 977619	n:3980000
OSTN   3980000 perm   6789 sec   (586 perm/sec)   p_kst 2.456329e-01   p_cons 3.802286e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 9.872019e-03	ci left: 3.782736e-02	ci right 3.820289e-02	k: 151679	n:3990000
KS ci ratio: 3.439231e-03	ci left: 2.451987e-01	ci right 2.460437e-01	k: 980028	n:3990000
OSTN   3990000 perm   6822 sec   (585 perm/sec)   p_kst 2.456211e-01   p_cons 3.801479e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 9.859710e-03	ci left: 3.782731e-02	ci right 3.820236e-02	k: 152058	n:4000000
KS ci ratio: 3.434874e-03	ci left: 2.452052e-01	ci right 2.460492e-01	k: 982508	n:4000000
OSTN   4000000 perm   6854 sec   (584 perm/sec)   p_kst 2.456270e-01   p_cons 3.801450e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 9.847548e-03	ci left: 3.782651e-02	ci right 3.820109e-02	k: 152434	n:4010000
KS ci ratio: 3.430471e-03	ci left: 2.452184e-01	ci right 2.460613e-01	k: 985015	n:4010000
OSTN   4010000 perm   6886 sec   (582 perm/sec)   p_kst 2.456397e-01   p_cons 3.801347e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 9.834862e-03	ci left: 3.782993e-02	ci right 3.820407e-02	k: 152827	n:4020000
KS ci ratio: 3.426124e-03	ci left: 2.452273e-01	ci right 2.460691e-01	k: 987505	n:4020000
OSTN   4020000 perm   6918 sec   (581 perm/sec)   p_kst 2.456480e-01   p_cons 3.801667e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 9.822725e-03	ci left: 3.782963e-02	ci right 3.820329e-02	k: 153205	n:4030000
KS ci ratio: 3.421881e-03	ci left: 2.452267e-01	ci right 2.460675e-01	k: 989957	n:4030000
OSTN   4030000 perm   6951 sec   (580 perm/sec)   p_kst 2.456469e-01   p_cons 3.801613e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 9.809669e-03	ci left: 3.783649e-02	ci right 3.820972e-02	k: 153612	n:4040000
KS ci ratio: 3.417766e-03	ci left: 2.452140e-01	ci right 2.460537e-01	k: 992360	n:4040000
OSTN   4040000 perm   6983 sec   (579 perm/sec)   p_kst 2.456337e-01   p_cons 3.802277e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 9.797460e-03	ci left: 3.783740e-02	ci right 3.821017e-02	k: 153995	n:4050000
KS ci ratio: 3.413481e-03	ci left: 2.452213e-01	ci right 2.460600e-01	k: 994844	n:4050000
OSTN   4050000 perm   7016 sec   (577 perm/sec)   p_kst 2.456405e-01   p_cons 3.802346e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 9.785032e-03	ci left: 3.784027e-02	ci right 3.821260e-02	k: 154386	n:4060000
KS ci ratio: 3.409332e-03	ci left: 2.452156e-01	ci right 2.460533e-01	k: 997275	n:4060000
OSTN   4060000 perm   7049 sec   (576 perm/sec)   p_kst 2.456342e-01   p_cons 3.802611e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 9.771962e-03	ci left: 3.784828e-02	ci right 3.822019e-02	k: 154798	n:4070000
KS ci ratio: 3.405218e-03	ci left: 2.452077e-01	ci right 2.460443e-01	k: 999697	n:4070000
OSTN   4070000 perm   7081 sec   (575 perm/sec)   p_kst 2.456258e-01   p_cons 3.803391e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 9.760513e-03	ci left: 3.784451e-02	ci right 3.821595e-02	k: 155162	n:4080000
KS ci ratio: 3.400940e-03	ci left: 2.452194e-01	ci right 2.460550e-01	k: 1002199	n:4080000
OSTN   4080000 perm   7114 sec   (574 perm/sec)   p_kst 2.456370e-01   p_cons 3.802990e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 9.749105e-03	ci left: 3.784077e-02	ci right 3.821172e-02	k: 155526	n:4090000
KS ci ratio: 3.396738e-03	ci left: 2.452244e-01	ci right 2.460590e-01	k: 1004674	n:4090000
OSTN   4090000 perm   7147 sec   (572 perm/sec)   p_kst 2.456416e-01   p_cons 3.802592e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 9.736146e-03	ci left: 3.784896e-02	ci right 3.821950e-02	k: 155939	n:4100000
KS ci ratio: 3.392541e-03	ci left: 2.452307e-01	ci right 2.460643e-01	k: 1007154	n:4100000
OSTN   4100000 perm   7180 sec   (571 perm/sec)   p_kst 2.456473e-01   p_cons 3.803390e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 9.724920e-03	ci left: 3.784449e-02	ci right 3.821456e-02	k: 156300	n:4110000
KS ci ratio: 3.388401e-03	ci left: 2.452323e-01	ci right 2.460649e-01	k: 1009615	n:4110000
OSTN   4110000 perm   7212 sec   (570 perm/sec)   p_kst 2.456484e-01   p_cons 3.802920e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 9.712443e-03	ci left: 3.784973e-02	ci right 3.821937e-02	k: 156701	n:4120000
KS ci ratio: 3.384369e-03	ci left: 2.452237e-01	ci right 2.460553e-01	k: 1012034	n:4120000
OSTN   4120000 perm   7244 sec   (569 perm/sec)   p_kst 2.456393e-01   p_cons 3.803422e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 9.699630e-03	ci left: 3.785784e-02	ci right 3.822707e-02	k: 157114	n:4130000
KS ci ratio: 3.380204e-03	ci left: 2.452314e-01	ci right 2.460619e-01	k: 1014520	n:4130000
OSTN   4130000 perm   7277 sec   (568 perm/sec)   p_kst 2.456465e-01   p_cons 3.804213e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 9.687890e-03	ci left: 3.785820e-02	ci right 3.822699e-02	k: 157495	n:4140000
KS ci ratio: 3.376281e-03	ci left: 2.452142e-01	ci right 2.460437e-01	k: 1016903	n:4140000
OSTN   4140000 perm   7310 sec   (566 perm/sec)   p_kst 2.456287e-01   p_cons 3.804227e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 9.676511e-03	ci left: 3.785616e-02	ci right 3.822449e-02	k: 157866	n:4150000
KS ci ratio: 3.372064e-03	ci left: 2.452307e-01	ci right 2.460593e-01	k: 1019426	n:4150000
OSTN   4150000 perm   7344 sec   (565 perm/sec)   p_kst 2.456448e-01   p_cons 3.804000e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 9.665966e-03	ci left: 3.784813e-02	ci right 3.821598e-02	k: 158212	n:4160000
KS ci ratio: 3.368193e-03	ci left: 2.452109e-01	ci right 2.460385e-01	k: 1021798	n:4160000
OSTN   4160000 perm   7378 sec   (564 perm/sec)   p_kst 2.456245e-01   p_cons 3.803173e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 9.653841e-03	ci left: 3.785234e-02	ci right 3.821977e-02	k: 158609	n:4170000
KS ci ratio: 3.364216e-03	ci left: 2.452044e-01	ci right 2.460310e-01	k: 1024225	n:4170000
OSTN   4170000 perm   7412 sec   (563 perm/sec)   p_kst 2.456175e-01   p_cons 3.803573e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 9.642140e-03	ci left: 3.785367e-02	ci right 3.822066e-02	k: 158994	n:4180000
KS ci ratio: 3.360242e-03	ci left: 2.451991e-01	ci right 2.460247e-01	k: 1026657	n:4180000
OSTN   4180000 perm   7445 sec   (561 perm/sec)   p_kst 2.456117e-01   p_cons 3.803684e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 9.631267e-03	ci left: 3.784904e-02	ci right 3.821557e-02	k: 159354	n:4190000
KS ci ratio: 3.356314e-03	ci left: 2.451903e-01	ci right 2.460148e-01	k: 1029074	n:4190000
OSTN   4190000 perm   7478 sec   (560 perm/sec)   p_kst 2.456024e-01   p_cons 3.803198e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 9.619586e-03	ci left: 3.785084e-02	ci right 3.821694e-02	k: 159741	n:4200000
KS ci ratio: 3.352491e-03	ci left: 2.451715e-01	ci right 2.459950e-01	k: 1031449	n:4200000
OSTN   4200000 perm   7512 sec   (559 perm/sec)   p_kst 2.455831e-01   p_cons 3.803357e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 9.607635e-03	ci left: 3.785501e-02	ci right 3.822069e-02	k: 160138	n:4210000
KS ci ratio: 3.348648e-03	ci left: 2.451564e-01	ci right 2.459789e-01	k: 1033839	n:4210000
OSTN   4210000 perm   7546 sec   (558 perm/sec)   p_kst 2.455675e-01   p_cons 3.803753e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 9.595697e-03	ci left: 3.785939e-02	ci right 3.822466e-02	k: 160536	n:4220000
KS ci ratio: 3.344812e-03	ci left: 2.451420e-01	ci right 2.459636e-01	k: 1036232	n:4220000
OSTN   4220000 perm   7580 sec   (557 perm/sec)   p_kst 2.455526e-01   p_cons 3.804171e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 9.584484e-03	ci left: 3.785856e-02	ci right 3.822339e-02	k: 160912	n:4230000
KS ci ratio: 3.340936e-03	ci left: 2.451336e-01	ci right 2.459542e-01	k: 1038650	n:4230000
OSTN   4230000 perm   7614 sec   (556 perm/sec)   p_kst 2.455437e-01   p_cons 3.804066e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 9.573250e-03	ci left: 3.785821e-02	ci right 3.822261e-02	k: 161290	n:4240000
KS ci ratio: 3.336917e-03	ci left: 2.451427e-01	ci right 2.459623e-01	k: 1041142	n:4240000
OSTN   4240000 perm   7648 sec   (554 perm/sec)   p_kst 2.455524e-01   p_cons 3.804009e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 9.562239e-03	ci left: 3.785645e-02	ci right 3.822041e-02	k: 161662	n:4250000
KS ci ratio: 3.332966e-03	ci left: 2.451457e-01	ci right 2.459643e-01	k: 1043608	n:4250000
OSTN   4250000 perm   7683 sec   (553 perm/sec)   p_kst 2.455548e-01   p_cons 3.803812e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 9.550194e-03	ci left: 3.786290e-02	ci right 3.822646e-02	k: 162069	n:4260000
KS ci ratio: 3.328838e-03	ci left: 2.451700e-01	ci right 2.459877e-01	k: 1046165	n:4260000
OSTN   4260000 perm   7717 sec   (552 perm/sec)   p_kst 2.455786e-01   p_cons 3.804437e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 9.538316e-03	ci left: 3.786838e-02	ci right 3.823154e-02	k: 162472	n:4270000
KS ci ratio: 3.324858e-03	ci left: 2.451794e-01	ci right 2.459961e-01	k: 1048659	n:4270000
OSTN   4270000 perm   7752 sec   (551 perm/sec)   p_kst 2.455876e-01   p_cons 3.804965e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 9.527303e-03	ci left: 3.786755e-02	ci right 3.823028e-02	k: 162848	n:4280000
KS ci ratio: 3.320868e-03	ci left: 2.451913e-01	ci right 2.460071e-01	k: 1051164	n:4280000
OSTN   4280000 perm   7787 sec   (550 perm/sec)   p_kst 2.455991e-01   p_cons 3.804860e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 9.516177e-03	ci left: 3.786788e-02	ci right 3.823018e-02	k: 163229	n:4290000
KS ci ratio: 3.316952e-03	ci left: 2.451967e-01	ci right 2.460116e-01	k: 1053641	n:4290000
OSTN   4290000 perm   7822 sec   (548 perm/sec)   p_kst 2.456040e-01   p_cons 3.804872e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 9.504124e-03	ci left: 3.787563e-02	ci right 3.823755e-02	k: 163642	n:4300000
KS ci ratio: 3.312976e-03	ci left: 2.452102e-01	ci right 2.460241e-01	k: 1056153	n:4300000
OSTN   4300000 perm   7857 sec   (547 perm/sec)   p_kst 2.456170e-01   p_cons 3.805628e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 9.491695e-03	ci left: 3.788659e-02	ci right 3.824814e-02	k: 164069	n:4310000
KS ci ratio: 3.309166e-03	ci left: 2.452067e-01	ci right 2.460197e-01	k: 1058592	n:4310000
OSTN   4310000 perm   7892 sec   (546 perm/sec)   p_kst 2.456130e-01   p_cons 3.806705e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 9.480993e-03	ci left: 3.788457e-02	ci right 3.824568e-02	k: 164440	n:4320000
KS ci ratio: 3.305245e-03	ci left: 2.452171e-01	ci right 2.460291e-01	k: 1061091	n:4320000
OSTN   4320000 perm   7928 sec   (545 perm/sec)   p_kst 2.456229e-01   p_cons 3.806481e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 9.471462e-03	ci left: 3.787379e-02	ci right 3.823445e-02	k: 164773	n:4330000
KS ci ratio: 3.301567e-03	ci left: 2.452018e-01	ci right 2.460129e-01	k: 1063479	n:4330000
OSTN   4330000 perm   7963 sec   (544 perm/sec)   p_kst 2.456072e-01   p_cons 3.805381e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 9.461275e-03	ci left: 3.786836e-02	ci right 3.822857e-02	k: 165129	n:4340000
KS ci ratio: 3.297759e-03	ci left: 2.452025e-01	ci right 2.460126e-01	k: 1065936	n:4340000
OSTN   4340000 perm   7998 sec   (543 perm/sec)   p_kst 2.456074e-01   p_cons 3.804816e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 9.450556e-03	ci left: 3.786731e-02	ci right 3.822710e-02	k: 165504	n:4350000
KS ci ratio: 3.293987e-03	ci left: 2.452006e-01	ci right 2.460098e-01	k: 1068382	n:4350000
OSTN   4350000 perm   8034 sec   (541 perm/sec)   p_kst 2.456051e-01   p_cons 3.804690e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 9.438454e-03	ci left: 3.787725e-02	ci right 3.823667e-02	k: 165927	n:4360000
KS ci ratio: 3.290193e-03	ci left: 2.452027e-01	ci right 2.460110e-01	k: 1070845	n:4360000
OSTN   4360000 perm   8069 sec   (540 perm/sec)   p_kst 2.456067e-01   p_cons 3.805665e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 9.427106e-03	ci left: 3.788166e-02	ci right 3.824069e-02	k: 166326	n:4370000
KS ci ratio: 3.286559e-03	ci left: 2.451882e-01	ci right 2.459956e-01	k: 1073236	n:4370000
OSTN   4370000 perm   8105 sec   (539 perm/sec)   p_kst 2.455918e-01   p_cons 3.806087e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 9.417472e-03	ci left: 3.787307e-02	ci right 3.823165e-02	k: 166668	n:4380000
KS ci ratio: 3.282849e-03	ci left: 2.451837e-01	ci right 2.459901e-01	k: 1075670	n:4380000
OSTN   4380000 perm   8142 sec   (538 perm/sec)   p_kst 2.455868e-01   p_cons 3.805205e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 9.406345e-03	ci left: 3.787634e-02	ci right 3.823452e-02	k: 167062	n:4390000
KS ci ratio: 3.279190e-03	ci left: 2.451749e-01	ci right 2.459804e-01	k: 1078085	n:4390000
OSTN   4390000 perm   8178 sec   (537 perm/sec)   p_kst 2.455774e-01   p_cons 3.805513e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 9.395229e-03	ci left: 3.787982e-02	ci right 3.823761e-02	k: 167457	n:4400000
KS ci ratio: 3.275441e-03	ci left: 2.451776e-01	ci right 2.459822e-01	k: 1080551	n:4400000
OSTN   4400000 perm   8214 sec   (536 perm/sec)   p_kst 2.455798e-01   p_cons 3.805841e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 9.384791e-03	ci left: 3.787830e-02	ci right 3.823568e-02	k: 167830	n:4410000
KS ci ratio: 3.271589e-03	ci left: 2.451936e-01	ci right 2.459973e-01	k: 1083075	n:4410000
OSTN   4410000 perm   8251 sec   (534 perm/sec)   p_kst 2.455952e-01   p_cons 3.805669e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 9.373432e-03	ci left: 3.788425e-02	ci right 3.824124e-02	k: 168236	n:4420000
KS ci ratio: 3.267882e-03	ci left: 2.451945e-01	ci right 2.459973e-01	k: 1085533	n:4420000
OSTN   4420000 perm   8287 sec   (533 perm/sec)   p_kst 2.455957e-01   p_cons 3.806244e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 9.362750e-03	ci left: 3.788521e-02	ci right 3.824181e-02	k: 168620	n:4430000
KS ci ratio: 3.264251e-03	ci left: 2.451882e-01	ci right 2.459900e-01	k: 1087959	n:4430000
OSTN   4430000 perm   8322 sec   (532 perm/sec)   p_kst 2.455889e-01   p_cons 3.806321e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 9.352190e-03	ci left: 3.788549e-02	ci right 3.824169e-02	k: 169001	n:4440000
KS ci ratio: 3.260569e-03	ci left: 2.451891e-01	ci right 2.459901e-01	k: 1090417	n:4440000
OSTN   4440000 perm   8360 sec   (531 perm/sec)   p_kst 2.455894e-01   p_cons 3.806329e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 9.341665e-03	ci left: 3.788577e-02	ci right 3.824157e-02	k: 169382	n:4450000
KS ci ratio: 3.256913e-03	ci left: 2.451884e-01	ci right 2.459885e-01	k: 1092868	n:4450000
OSTN   4450000 perm   8396 sec   (530 perm/sec)   p_kst 2.455883e-01   p_cons 3.806337e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 9.332090e-03	ci left: 3.787890e-02	ci right 3.823426e-02	k: 169731	n:4460000
KS ci ratio: 3.253226e-03	ci left: 2.451927e-01	ci right 2.459919e-01	k: 1095341	n:4460000
OSTN   4460000 perm   8432 sec   (529 perm/sec)   p_kst 2.455922e-01   p_cons 3.805628e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 9.321719e-03	ci left: 3.787852e-02	ci right 3.823349e-02	k: 170109	n:4470000
KS ci ratio: 3.249534e-03	ci left: 2.451990e-01	ci right 2.459973e-01	k: 1097823	n:4470000
OSTN   4470000 perm   8469 sec   (528 perm/sec)   p_kst 2.455980e-01   p_cons 3.805570e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 9.311042e-03	ci left: 3.788082e-02	ci right 3.823540e-02	k: 170499	n:4480000
KS ci ratio: 3.245885e-03	ci left: 2.452017e-01	ci right 2.459991e-01	k: 1100289	n:4480000
OSTN   4480000 perm   8505 sec   (527 perm/sec)   p_kst 2.456002e-01   p_cons 3.805781e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 9.300967e-03	ci left: 3.787867e-02	ci right 3.823284e-02	k: 170869	n:4490000
KS ci ratio: 3.242125e-03	ci left: 2.452186e-01	ci right 2.460151e-01	k: 1102819	n:4490000
OSTN   4490000 perm   8541 sec   (526 perm/sec)   p_kst 2.456167e-01   p_cons 3.805546e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 9.291093e-03	ci left: 3.787520e-02	ci right 3.822895e-02	k: 171233	n:4500000
KS ci ratio: 3.238639e-03	ci left: 2.452055e-01	ci right 2.460011e-01	k: 1105214	n:4500000
OSTN   4500000 perm   8577 sec   (525 perm/sec)   p_kst 2.456031e-01   p_cons 3.805178e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 9.281336e-03	ci left: 3.787107e-02	ci right 3.822442e-02	k: 171594	n:4510000
KS ci ratio: 3.234892e-03	ci left: 2.452236e-01	ci right 2.460184e-01	k: 1107750	n:4510000
OSTN   4510000 perm   8614 sec   (524 perm/sec)   p_kst 2.456208e-01   p_cons 3.804745e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 9.270796e-03	ci left: 3.787337e-02	ci right 3.822634e-02	k: 171984	n:4520000
KS ci ratio: 3.231285e-03	ci left: 2.452271e-01	ci right 2.460210e-01	k: 1110220	n:4520000
OSTN   4520000 perm   8652 sec   (522 perm/sec)   p_kst 2.456239e-01   p_cons 3.804956e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 9.259902e-03	ci left: 3.787874e-02	ci right 3.823134e-02	k: 172388	n:4530000
KS ci ratio: 3.227640e-03	ci left: 2.452363e-01	ci right 2.460293e-01	k: 1112716	n:4530000
OSTN   4530000 perm   8694 sec   (521 perm/sec)   p_kst 2.456327e-01   p_cons 3.805475e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 9.249407e-03	ci left: 3.788123e-02	ci right 3.823345e-02	k: 172779	n:4540000
KS ci ratio: 3.223992e-03	ci left: 2.452473e-01	ci right 2.460394e-01	k: 1115220	n:4540000
OSTN   4540000 perm   8731 sec   (520 perm/sec)   p_kst 2.456432e-01   p_cons 3.805705e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 9.238893e-03	ci left: 3.788415e-02	ci right 3.823600e-02	k: 173172	n:4550000
KS ci ratio: 3.220415e-03	ci left: 2.452513e-01	ci right 2.460426e-01	k: 1117693	n:4550000
OSTN   4550000 perm   8770 sec   (519 perm/sec)   p_kst 2.456468e-01   p_cons 3.805978e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 9.228442e-03	ci left: 3.788684e-02	ci right 3.823831e-02	k: 173564	n:4560000
KS ci ratio: 3.216906e-03	ci left: 2.452490e-01	ci right 2.460394e-01	k: 1120137	n:4560000
OSTN   4560000 perm   8807 sec   (518 perm/sec)   p_kst 2.456441e-01   p_cons 3.806228e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 9.218963e-03	ci left: 3.788209e-02	ci right 3.823315e-02	k: 173922	n:4570000
KS ci ratio: 3.213408e-03	ci left: 2.452467e-01	ci right 2.460363e-01	k: 1122581	n:4570000
OSTN   4570000 perm   8845 sec   (517 perm/sec)   p_kst 2.456414e-01   p_cons 3.805733e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 9.207838e-03	ci left: 3.789065e-02	ci right 3.824137e-02	k: 174341	n:4580000
KS ci ratio: 3.210149e-03	ci left: 2.452183e-01	ci right 2.460069e-01	k: 1124905	n:4580000
OSTN   4580000 perm   8882 sec   (516 perm/sec)   p_kst 2.456124e-01   p_cons 3.806572e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 9.197410e-03	ci left: 3.789396e-02	ci right 3.824431e-02	k: 174736	n:4590000
KS ci ratio: 3.206793e-03	ci left: 2.452021e-01	ci right 2.459899e-01	k: 1127285	n:4590000
OSTN   4590000 perm   8920 sec   (515 perm/sec)   p_kst 2.455959e-01   p_cons 3.806885e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 9.187835e-03	ci left: 3.789075e-02	ci right 3.824070e-02	k: 175101	n:4600000
KS ci ratio: 3.203377e-03	ci left: 2.451943e-01	ci right 2.459812e-01	k: 1129703	n:4600000
OSTN   4600000 perm   8959 sec   (513 perm/sec)   p_kst 2.455876e-01   p_cons 3.806543e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 9.178154e-03	ci left: 3.788863e-02	ci right 3.823819e-02	k: 175471	n:4610000
KS ci ratio: 3.199912e-03	ci left: 2.451935e-01	ci right 2.459795e-01	k: 1132153	n:4610000
OSTN   4610000 perm   8998 sec   (512 perm/sec)   p_kst 2.455863e-01   p_cons 3.806312e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 9.169073e-03	ci left: 3.788199e-02	ci right 3.823114e-02	k: 175820	n:4620000
KS ci ratio: 3.196501e-03	ci left: 2.451876e-01	ci right 2.459728e-01	k: 1134580	n:4620000
OSTN   4620000 perm   9038 sec   (511 perm/sec)   p_kst 2.455801e-01   p_cons 3.805628e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 9.158425e-03	ci left: 3.788809e-02	ci right 3.823689e-02	k: 176228	n:4630000
KS ci ratio: 3.193011e-03	ci left: 2.451922e-01	ci right 2.459766e-01	k: 1137055	n:4630000
OSTN   4630000 perm   9075 sec   (510 perm/sec)   p_kst 2.455842e-01   p_cons 3.806220e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 9.149483e-03	ci left: 3.788083e-02	ci right 3.822923e-02	k: 176574	n:4640000
KS ci ratio: 3.189607e-03	ci left: 2.451881e-01	ci right 2.459717e-01	k: 1139490	n:4640000
OSTN   4640000 perm   9117 sec   (509 perm/sec)   p_kst 2.455797e-01   p_cons 3.805474e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 9.138715e-03	ci left: 3.788841e-02	ci right 3.823646e-02	k: 176989	n:4650000
KS ci ratio: 3.186138e-03	ci left: 2.451929e-01	ci right 2.459756e-01	k: 1141966	n:4650000
OSTN   4650000 perm   9156 sec   (508 perm/sec)   p_kst 2.455841e-01   p_cons 3.806215e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 9.128974e-03	ci left: 3.788804e-02	ci right 3.823571e-02	k: 177367	n:4660000
KS ci ratio: 3.182690e-03	ci left: 2.451966e-01	ci right 2.459784e-01	k: 1144437	n:4660000
OSTN   4660000 perm   9194 sec   (507 perm/sec)   p_kst 2.455873e-01   p_cons 3.806159e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 9.119798e-03	ci left: 3.788339e-02	ci right 3.823067e-02	k: 177725	n:4670000
KS ci ratio: 3.179245e-03	ci left: 2.452011e-01	ci right 2.459821e-01	k: 1146912	n:4670000
OSTN   4670000 perm   9233 sec   (506 perm/sec)   p_kst 2.455914e-01   p_cons 3.805675e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 9.108789e-03	ci left: 3.789369e-02	ci right 3.824064e-02	k: 178153	n:4680000
KS ci ratio: 3.175882e-03	ci left: 2.451975e-01	ci right 2.459776e-01	k: 1149349	n:4680000
OSTN   4680000 perm   9272 sec   (505 perm/sec)   p_kst 2.455874e-01   p_cons 3.806688e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 9.099223e-03	ci left: 3.789267e-02	ci right 3.823925e-02	k: 178528	n:4690000
KS ci ratio: 3.172653e-03	ci left: 2.451794e-01	ci right 2.459587e-01	k: 1151718	n:4690000
OSTN   4690000 perm   9310 sec   (504 perm/sec)   p_kst 2.455689e-01   p_cons 3.806567e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 9.088631e-03	ci left: 3.790014e-02	ci right 3.824638e-02	k: 178943	n:4700000
KS ci ratio: 3.169368e-03	ci left: 2.451690e-01	ci right 2.459475e-01	k: 1154123	n:4700000
OSTN   4700000 perm   9349 sec   (503 perm/sec)   p_kst 2.455581e-01   p_cons 3.807298e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 9.078207e-03	ci left: 3.790653e-02	ci right 3.825243e-02	k: 179353	n:4710000
KS ci ratio: 3.165985e-03	ci left: 2.451714e-01	ci right 2.459491e-01	k: 1156588	n:4710000
OSTN   4710000 perm   9389 sec   (502 perm/sec)   p_kst 2.455601e-01   p_cons 3.807919e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 9.068528e-03	ci left: 3.790718e-02	ci right 3.825271e-02	k: 179736	n:4720000
KS ci ratio: 3.162619e-03	ci left: 2.451730e-01	ci right 2.459498e-01	k: 1159049	n:4720000
OSTN   4720000 perm   9427 sec   (501 perm/sec)   p_kst 2.455612e-01   p_cons 3.807966e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 9.058330e-03	ci left: 3.791226e-02	ci right 3.825744e-02	k: 180140	n:4730000
KS ci ratio: 3.159275e-03	ci left: 2.451733e-01	ci right 2.459493e-01	k: 1161504	n:4730000
OSTN   4730000 perm   9468 sec   (500 perm/sec)   p_kst 2.455611e-01   p_cons 3.808457e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 9.049339e-03	ci left: 3.790784e-02	ci right 3.825264e-02	k: 180499	n:4740000
KS ci ratio: 3.155879e-03	ci left: 2.451809e-01	ci right 2.459561e-01	k: 1163994	n:4740000
OSTN   4740000 perm   9507 sec   (499 perm/sec)   p_kst 2.455684e-01   p_cons 3.807996e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 9.040609e-03	ci left: 3.790155e-02	ci right 3.824596e-02	k: 180849	n:4750000
KS ci ratio: 3.152564e-03	ci left: 2.451803e-01	ci right 2.459547e-01	k: 1166445	n:4750000
OSTN   4750000 perm   9546 sec   (498 perm/sec)   p_kst 2.455674e-01   p_cons 3.807347e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 9.031230e-03	ci left: 3.790074e-02	ci right 3.824478e-02	k: 181225	n:4760000
KS ci ratio: 3.149241e-03	ci left: 2.451819e-01	ci right 2.459554e-01	k: 1168906	n:4760000
OSTN   4760000 perm   9586 sec   (497 perm/sec)   p_kst 2.455685e-01   p_cons 3.807248e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 9.022139e-03	ci left: 3.789784e-02	ci right 3.824151e-02	k: 181591	n:4770000
KS ci ratio: 3.145879e-03	ci left: 2.451893e-01	ci right 2.459620e-01	k: 1171395	n:4770000
OSTN   4770000 perm   9625 sec   (496 perm/sec)   p_kst 2.455755e-01   p_cons 3.806939e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 9.012637e-03	ci left: 3.789850e-02	ci right 3.824181e-02	k: 181974	n:4780000
KS ci ratio: 3.142579e-03	ci left: 2.451905e-01	ci right 2.459625e-01	k: 1173855	n:4780000
OSTN   4780000 perm   9665 sec   (495 perm/sec)   p_kst 2.455764e-01   p_cons 3.806987e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 9.003217e-03	ci left: 3.789874e-02	ci right 3.824169e-02	k: 182355	n:4790000
KS ci ratio: 3.139443e-03	ci left: 2.451737e-01	ci right 2.459448e-01	k: 1176228	n:4790000
OSTN   4790000 perm   9705 sec   (494 perm/sec)   p_kst 2.455591e-01   p_cons 3.806994e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 8.994517e-03	ci left: 3.789337e-02	ci right 3.823594e-02	k: 182709	n:4800000
KS ci ratio: 3.136116e-03	ci left: 2.451806e-01	ci right 2.459509e-01	k: 1178715	n:4800000
OSTN   4800000 perm   9744 sec   (493 perm/sec)   p_kst 2.455656e-01   p_cons 3.806437e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 8.985000e-03	ci left: 3.789486e-02	ci right 3.823709e-02	k: 183096	n:4810000
KS ci ratio: 3.132894e-03	ci left: 2.451763e-01	ci right 2.459458e-01	k: 1181148	n:4810000
OSTN   4810000 perm   9784 sec   (492 perm/sec)   p_kst 2.455609e-01   p_cons 3.806570e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 8.975996e-03	ci left: 3.789242e-02	ci right 3.823428e-02	k: 183464	n:4820000
KS ci ratio: 3.129607e-03	ci left: 2.451809e-01	ci right 2.459497e-01	k: 1183624	n:4820000
OSTN   4820000 perm   9823 sec   (491 perm/sec)   p_kst 2.455651e-01   p_cons 3.806307e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 8.967476e-03	ci left: 3.788627e-02	ci right 3.822774e-02	k: 183814	n:4830000
KS ci ratio: 3.126374e-03	ci left: 2.451804e-01	ci right 2.459483e-01	k: 1186075	n:4830000
OSTN   4830000 perm   9863 sec   (490 perm/sec)   p_kst 2.455642e-01   p_cons 3.805673e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 8.957716e-03	ci left: 3.789045e-02	ci right 3.823159e-02	k: 184214	n:4840000
KS ci ratio: 3.123086e-03	ci left: 2.451875e-01	ci right 2.459546e-01	k: 1188563	n:4840000
OSTN   4840000 perm   9902 sec   (489 perm/sec)   p_kst 2.455709e-01   p_cons 3.806074e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 8.949021e-03	ci left: 3.788618e-02	ci right 3.822695e-02	k: 184573	n:4850000
KS ci ratio: 3.119814e-03	ci left: 2.451939e-01	ci right 2.459602e-01	k: 1191048	n:4850000
OSTN   4850000 perm   9942 sec   (488 perm/sec)   p_kst 2.455769e-01   p_cons 3.805629e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 8.939548e-03	ci left: 3.788850e-02	ci right 3.822892e-02	k: 184964	n:4860000
KS ci ratio: 3.116470e-03	ci left: 2.452100e-01	ci right 2.459755e-01	k: 1193580	n:4860000
OSTN   4860000 perm   9981 sec   (487 perm/sec)   p_kst 2.455926e-01   p_cons 3.805844e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 8.930880e-03	ci left: 3.788446e-02	ci right 3.822451e-02	k: 185324	n:4870000
KS ci ratio: 3.113248e-03	ci left: 2.452128e-01	ci right 2.459776e-01	k: 1196048	n:4870000
OSTN   4870000 perm   10021 sec   (486 perm/sec)   p_kst 2.455951e-01   p_cons 3.805421e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 8.921814e-03	ci left: 3.788390e-02	ci right 3.822361e-02	k: 185701	n:4880000
KS ci ratio: 3.110120e-03	ci left: 2.452057e-01	ci right 2.459696e-01	k: 1198467	n:4880000
OSTN   4880000 perm   10062 sec   (485 perm/sec)   p_kst 2.455875e-01   p_cons 3.805348e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 8.912849e-03	ci left: 3.788274e-02	ci right 3.822210e-02	k: 186075	n:4890000
KS ci ratio: 3.106978e-03	ci left: 2.452014e-01	ci right 2.459646e-01	k: 1200900	n:4890000
OSTN   4890000 perm   10102 sec   (484 perm/sec)   p_kst 2.455828e-01   p_cons 3.805215e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 8.904359e-03	ci left: 3.787792e-02	ci right 3.821691e-02	k: 186431	n:4900000
KS ci ratio: 3.103783e-03	ci left: 2.452044e-01	ci right 2.459669e-01	k: 1203369	n:4900000
OSTN   4900000 perm   10144 sec   (483 perm/sec)   p_kst 2.455855e-01   p_cons 3.804714e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 8.894828e-03	ci left: 3.788186e-02	ci right 3.822052e-02	k: 186830	n:4910000
KS ci ratio: 3.100759e-03	ci left: 2.451884e-01	ci right 2.459500e-01	k: 1205744	n:4910000
OSTN   4910000 perm   10184 sec   (482 perm/sec)   p_kst 2.455690e-01   p_cons 3.805092e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 8.885649e-03	ci left: 3.788315e-02	ci right 3.822146e-02	k: 187216	n:4920000
KS ci ratio: 3.097519e-03	ci left: 2.451992e-01	ci right 2.459601e-01	k: 1208251	n:4920000
OSTN   4920000 perm   10225 sec   (481 perm/sec)   p_kst 2.455795e-01   p_cons 3.805203e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 8.876448e-03	ci left: 3.788483e-02	ci right 3.822281e-02	k: 187604	n:4930000
KS ci ratio: 3.094438e-03	ci left: 2.451921e-01	ci right 2.459522e-01	k: 1210670	n:4930000
OSTN   4930000 perm   10265 sec   (480 perm/sec)   p_kst 2.455720e-01   p_cons 3.805355e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 8.867424e-03	ci left: 3.788530e-02	ci right 3.822294e-02	k: 187986	n:4940000
KS ci ratio: 3.091446e-03	ci left: 2.451756e-01	ci right 2.459349e-01	k: 1213042	n:4940000
OSTN   4940000 perm   10305 sec   (479 perm/sec)   p_kst 2.455551e-01   p_cons 3.805385e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 8.858573e-03	ci left: 3.788455e-02	ci right 3.822185e-02	k: 188362	n:4950000
KS ci ratio: 3.088370e-03	ci left: 2.451702e-01	ci right 2.459287e-01	k: 1215469	n:4950000
OSTN   4950000 perm   10346 sec   (478 perm/sec)   p_kst 2.455493e-01   p_cons 3.805293e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 8.849725e-03	ci left: 3.788401e-02	ci right 3.822096e-02	k: 188739	n:4960000
KS ci ratio: 3.085160e-03	ci left: 2.451819e-01	ci right 2.459397e-01	k: 1217981	n:4960000
OSTN   4960000 perm   10387 sec   (478 perm/sec)   p_kst 2.455607e-01   p_cons 3.805222e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 8.841510e-03	ci left: 3.787846e-02	ci right 3.821504e-02	k: 189091	n:4970000
KS ci ratio: 3.081850e-03	ci left: 2.452069e-01	ci right 2.459640e-01	k: 1220559	n:4970000
OSTN   4970000 perm   10427 sec   (477 perm/sec)   p_kst 2.455853e-01   p_cons 3.804648e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 8.833246e-03	ci left: 3.787352e-02	ci right 3.820975e-02	k: 189446	n:4980000
KS ci ratio: 3.078636e-03	ci left: 2.452216e-01	ci right 2.459779e-01	k: 1223086	n:4980000
OSTN   4980000 perm   10467 sec   (476 perm/sec)   p_kst 2.455996e-01   p_cons 3.804137e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 8.824255e-03	ci left: 3.787481e-02	ci right 3.821070e-02	k: 189832	n:4990000
KS ci ratio: 3.075567e-03	ci left: 2.452198e-01	ci right 2.459753e-01	k: 1225531	n:4990000
OSTN   4990000 perm   10509 sec   (475 perm/sec)   p_kst 2.455974e-01   p_cons 3.804248e-02   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 8.815943e-03	ci left: 3.787070e-02	ci right 3.820624e-02	k: 190191	n:5000000
KS ci ratio: 3.072572e-03	ci left: 2.452104e-01	ci right 2.459651e-01	k: 1227938	n:5000000
OSTN   5000000 perm   10551 sec   (474 perm/sec)   p_kst 2.455876e-01   p_cons 3.803820e-02   p_joint 0

Outputting figure to mutsig2_images.part000000000124/OSTN.3_414_5000000_0.24559_0.038038_0.png
                gene_name: OSTN
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 60 percent done.
OSTalpha
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.216589e-02	ci left: 1.777272e-01	ci right 1.930565e-01	k: 1853	n:10000
Cons ci ratio: 5.644158e-01	ci left: 3.455366e-03	ci right 6.245157e-03	k: 47	n:10000
KS ci ratio: 1.890004e-02	ci left: 8.035925e-01	ci right 8.190257e-01	k: 8114	n:10000
OSTalpha   10000 perm   2 sec   (6360 perm/sec)   p_kst 8.114000e-01   p_cons 4.700000e-03   p_joint 1.853000e-01

Joint ci ratio: 5.534138e-02	ci left: 1.949700e-01	ci right 2.061172e-01	k: 4010	n:20000
Cons ci ratio: 4.145833e-01	ci left: 3.530379e-03	ci right 5.418154e-03	k: 88	n:20000
KS ci ratio: 1.325036e-02	ci left: 8.085369e-01	ci right 8.193717e-01	k: 16280	n:20000
OSTalpha   20000 perm   4 sec   (5539 perm/sec)   p_kst 8.140000e-01   p_cons 4.400000e-03   p_joint 2.005000e-01

Joint ci ratio: 3.910940e-02	ci left: 2.459356e-01	ci right 2.557793e-01	k: 7525	n:30000
Cons ci ratio: 3.457367e-01	ci left: 3.530325e-03	ci right 5.034838e-03	k: 127	n:30000
KS ci ratio: 1.083663e-02	ci left: 8.090454e-01	ci right 8.178938e-01	k: 24405	n:30000
OSTalpha   30000 perm   6 sec   (5260 perm/sec)   p_kst 8.135000e-01   p_cons 4.233333e-03   p_joint 2.508333e-01

Joint ci ratio: 3.289304e-02	ci left: 2.576957e-01	ci right 2.663389e-01	k: 10480	n:40000
Cons ci ratio: 2.973832e-01	ci left: 3.682473e-03	ci right 4.991094e-03	k: 172	n:40000
KS ci ratio: 9.351494e-03	ci left: 8.107311e-01	ci right 8.183732e-01	k: 32583	n:40000
OSTalpha   40000 perm   8 sec   (5076 perm/sec)   p_kst 8.145750e-01   p_cons 4.300000e-03   p_joint 2.620000e-01

Joint ci ratio: 3.395073e-02	ci left: 2.069137e-01	ci right 2.140799e-01	k: 10524	n:50000
Cons ci ratio: 2.661428e-01	ci left: 3.745401e-03	ci right 4.913300e-03	k: 215	n:50000
KS ci ratio: 8.331382e-03	ci left: 8.123336e-01	ci right 8.191497e-01	k: 40788	n:50000
OSTalpha   50000 perm   10 sec   (4925 perm/sec)   p_kst 8.157600e-01   p_cons 4.300000e-03   p_joint 2.104800e-01

Joint ci ratio: 3.102065e-02	ci left: 2.069289e-01	ci right 2.134658e-01	k: 12611	n:60000
Cons ci ratio: 2.407260e-01	ci left: 3.870500e-03	ci right 4.944972e-03	k: 263	n:60000
KS ci ratio: 7.617940e-03	ci left: 8.121379e-01	ci right 8.183649e-01	k: 48916	n:60000
OSTalpha   60000 perm   12 sec   (4802 perm/sec)   p_kst 8.152667e-01   p_cons 4.383333e-03   p_joint 2.101833e-01

Joint ci ratio: 2.888242e-02	ci left: 2.053109e-01	ci right 2.113419e-01	k: 14582	n:70000
Cons ci ratio: 2.258342e-01	ci left: 3.801810e-03	ci right 4.782838e-03	k: 299	n:70000
KS ci ratio: 7.033648e-03	ci left: 8.131955e-01	ci right 8.189497e-01	k: 57126	n:70000
OSTalpha   70000 perm   15 sec   (4700 perm/sec)   p_kst 8.160857e-01   p_cons 4.271429e-03   p_joint 2.083143e-01

Joint ci ratio: 2.750699e-02	ci left: 1.996701e-01	ci right 2.052515e-01	k: 16196	n:80000
Cons ci ratio: 2.105888e-01	ci left: 3.858384e-03	ci right 4.778134e-03	k: 344	n:80000
KS ci ratio: 6.569465e-03	ci left: 8.138378e-01	ci right 8.192143e-01	k: 65323	n:80000
OSTalpha   80000 perm   17 sec   (4615 perm/sec)   p_kst 8.165375e-01   p_cons 4.300000e-03   p_joint 2.024500e-01

Joint ci ratio: 2.256523e-02	ci left: 2.482694e-01	ci right 2.539467e-01	k: 22599	n:90000
Cons ci ratio: 1.968022e-01	ci left: 3.956940e-03	ci right 4.831033e-03	k: 394	n:90000
KS ci ratio: 6.199573e-03	ci left: 8.137097e-01	ci right 8.187810e-01	k: 73463	n:90000
OSTalpha   90000 perm   20 sec   (4530 perm/sec)   p_kst 8.162556e-01   p_cons 4.377778e-03   p_joint 2.511000e-01

Joint ci ratio: 2.146554e-02	ci left: 2.473982e-01	ci right 2.527763e-01	k: 25008	n:100000
Cons ci ratio: 1.875394e-01	ci left: 3.942007e-03	ci right 4.767149e-03	k: 434	n:100000
KS ci ratio: 5.878203e-03	ci left: 8.140064e-01	ci right 8.188153e-01	k: 81642	n:100000
OSTalpha   100000 perm   22 sec   (4446 perm/sec)   p_kst 8.164200e-01   p_cons 4.340000e-03   p_joint 2.500800e-01

Joint ci ratio: 2.172722e-02	ci left: 2.258584e-01	ci right 2.308286e-01	k: 25117	n:110000
Cons ci ratio: 1.766919e-01	ci left: 4.060887e-03	ci right 4.856497e-03	k: 489	n:110000
KS ci ratio: 5.606377e-03	ci left: 8.140261e-01	ci right 8.186117e-01	k: 89796	n:110000
OSTalpha   110000 perm   25 sec   (4368 perm/sec)   p_kst 8.163273e-01   p_cons 4.445455e-03   p_joint 2.283364e-01

Joint ci ratio: 2.083695e-02	ci left: 2.253796e-01	ci right 2.301336e-01	k: 27330	n:120000
Cons ci ratio: 1.683093e-01	ci left: 4.121175e-03	ci right 4.886408e-03	k: 539	n:120000
KS ci ratio: 5.375192e-03	ci left: 8.137038e-01	ci right 8.180976e-01	k: 97909	n:120000
OSTalpha   120000 perm   28 sec   (4297 perm/sec)   p_kst 8.159083e-01   p_cons 4.491667e-03   p_joint 2.277500e-01

Joint ci ratio: 2.002895e-02	ci left: 2.253077e-01	ci right 2.298737e-01	k: 29586	n:130000
Cons ci ratio: 1.631127e-01	ci left: 4.062218e-03	ci right 4.790929e-03	k: 574	n:130000
KS ci ratio: 5.166046e-03	ci left: 8.136896e-01	ci right 8.179117e-01	k: 106055	n:130000
OSTalpha   130000 perm   31 sec   (4219 perm/sec)   p_kst 8.158077e-01   p_cons 4.415385e-03   p_joint 2.275846e-01

Joint ci ratio: 1.931055e-02	ci left: 2.252065e-01	ci right 2.296048e-01	k: 31836	n:140000
Cons ci ratio: 1.570814e-01	ci left: 4.080616e-03	ci right 4.783010e-03	k: 619	n:140000
KS ci ratio: 4.981091e-03	ci left: 8.135872e-01	ci right 8.176569e-01	k: 114188	n:140000
OSTalpha   140000 perm   34 sec   (4151 perm/sec)   p_kst 8.156286e-01   p_cons 4.421429e-03   p_joint 2.274000e-01

Joint ci ratio: 1.754479e-02	ci left: 2.475044e-01	ci right 2.518919e-01	k: 37454	n:150000
Cons ci ratio: 1.494326e-01	ci left: 4.225321e-03	ci right 4.914045e-03	k: 684	n:150000
KS ci ratio: 4.813500e-03	ci left: 8.135745e-01	ci right 8.175067e-01	k: 122332	n:150000
OSTalpha   150000 perm   37 sec   (4090 perm/sec)   p_kst 8.155467e-01   p_cons 4.560000e-03   p_joint 2.496933e-01

Joint ci ratio: 1.696531e-02	ci left: 2.480667e-01	ci right 2.523174e-01	k: 40030	n:160000
Cons ci ratio: 1.448536e-01	ci left: 4.226115e-03	ci right 4.892034e-03	k: 728	n:160000
KS ci ratio: 4.652852e-03	ci left: 8.141427e-01	ci right 8.179458e-01	k: 130568	n:160000
OSTalpha   160000 perm   40 sec   (4026 perm/sec)   p_kst 8.160500e-01   p_cons 4.550000e-03   p_joint 2.501875e-01

Joint ci ratio: 1.531835e-02	ci left: 2.759533e-01	ci right 2.802189e-01	k: 47274	n:170000
Cons ci ratio: 1.403979e-01	ci left: 4.244129e-03	ci right 4.890593e-03	k: 775	n:170000
KS ci ratio: 4.513000e-03	ci left: 8.142619e-01	ci right 8.179508e-01	k: 138739	n:170000
OSTalpha   170000 perm   43 sec   (3965 perm/sec)   p_kst 8.161118e-01   p_cons 4.558824e-03   p_joint 2.780824e-01

Joint ci ratio: 1.487892e-02	ci left: 2.762249e-01	ci right 2.803711e-01	k: 50093	n:180000
Cons ci ratio: 1.362464e-01	ci left: 4.265786e-03	ci right 4.894778e-03	k: 823	n:180000
KS ci ratio: 4.385044e-03	ci left: 8.143694e-01	ci right 8.179538e-01	k: 146910	n:180000
OSTalpha   180000 perm   46 sec   (3904 perm/sec)   p_kst 8.161667e-01   p_cons 4.572222e-03   p_joint 2.782944e-01

Joint ci ratio: 1.448169e-02	ci left: 2.762909e-01	ci right 2.803264e-01	k: 52878	n:190000
Cons ci ratio: 1.326721e-01	ci left: 4.270147e-03	ci right 4.881962e-03	k: 868	n:190000
KS ci ratio: 4.269934e-03	ci left: 8.142872e-01	ci right 8.177768e-01	k: 155047	n:190000
OSTalpha   190000 perm   50 sec   (3827 perm/sec)   p_kst 8.160368e-01   p_cons 4.568421e-03   p_joint 2.783053e-01

Joint ci ratio: 1.412646e-02	ci left: 2.760173e-01	ci right 2.799491e-01	k: 55596	n:200000
Cons ci ratio: 1.297221e-01	ci left: 4.250073e-03	ci right 4.844428e-03	k: 908	n:200000
KS ci ratio: 4.165376e-03	ci left: 8.140739e-01	ci right 8.174769e-01	k: 163156	n:200000
OSTalpha   200000 perm   53 sec   (3745 perm/sec)   p_kst 8.157800e-01   p_cons 4.540000e-03   p_joint 2.779800e-01

Joint ci ratio: 1.379286e-02	ci left: 2.758660e-01	ci right 2.797021e-01	k: 58334	n:210000
Cons ci ratio: 1.268933e-01	ci left: 4.236658e-03	ci right 4.815245e-03	k: 949	n:210000
KS ci ratio: 4.067489e-03	ci left: 8.139298e-01	ci right 8.172519e-01	k: 171275	n:210000
OSTalpha   210000 perm   57 sec   (3683 perm/sec)   p_kst 8.155952e-01   p_cons 4.519048e-03   p_joint 2.777810e-01

Joint ci ratio: 1.348320e-02	ci left: 2.756886e-01	ci right 2.794355e-01	k: 61063	n:220000
Cons ci ratio: 1.238657e-01	ci left: 4.251021e-03	ci right 4.816701e-03	k: 996	n:220000
KS ci ratio: 3.976129e-03	ci left: 8.138043e-01	ci right 8.170510e-01	k: 179395	n:220000
OSTalpha   220000 perm   61 sec   (3626 perm/sec)   p_kst 8.154318e-01   p_cons 4.527273e-03   p_joint 2.775591e-01

Joint ci ratio: 1.349991e-02	ci left: 2.664379e-01	ci right 2.700636e-01	k: 61697	n:230000
Cons ci ratio: 1.215136e-01	ci left: 4.230552e-03	ci right 4.782049e-03	k: 1035	n:230000
KS ci ratio: 3.887400e-03	ci left: 8.139435e-01	ci right 8.171181e-01	k: 187573	n:230000
OSTalpha   230000 perm   64 sec   (3579 perm/sec)   p_kst 8.155348e-01   p_cons 4.500000e-03   p_joint 2.682478e-01

Joint ci ratio: 1.289234e-02	ci left: 2.762914e-01	ci right 2.798806e-01	k: 66740	n:240000
Cons ci ratio: 1.196826e-01	ci left: 4.183584e-03	ci right 4.720159e-03	k: 1067	n:240000
KS ci ratio: 3.801036e-03	ci left: 8.143352e-01	ci right 8.174405e-01	k: 195814	n:240000
OSTalpha   240000 perm   68 sec   (3533 perm/sec)   p_kst 8.158917e-01   p_cons 4.445833e-03   p_joint 2.780833e-01

Joint ci ratio: 1.263109e-02	ci left: 2.763522e-01	ci right 2.798690e-01	k: 69527	n:250000
Cons ci ratio: 1.176636e-01	ci left: 4.159844e-03	ci right 4.683747e-03	k: 1104	n:250000
KS ci ratio: 3.723194e-03	ci left: 8.144514e-01	ci right 8.174933e-01	k: 203994	n:250000
OSTalpha   250000 perm   72 sec   (3489 perm/sec)   p_kst 8.159760e-01   p_cons 4.416000e-03   p_joint 2.781080e-01

Joint ci ratio: 1.238143e-02	ci left: 2.765280e-01	ci right 2.799769e-01	k: 72345	n:260000
Cons ci ratio: 1.150873e-01	ci left: 4.186563e-03	ci right 4.701502e-03	k: 1154	n:260000
KS ci ratio: 3.650460e-03	ci left: 8.145167e-01	ci right 8.174993e-01	k: 212163	n:260000
OSTalpha   260000 perm   75 sec   (3444 perm/sec)   p_kst 8.160115e-01   p_cons 4.438462e-03   p_joint 2.782500e-01

Joint ci ratio: 1.214847e-02	ci left: 2.766101e-01	ci right 2.799947e-01	k: 75141	n:270000
Cons ci ratio: 1.129560e-01	ci left: 4.189821e-03	ci right 4.694981e-03	k: 1198	n:270000
KS ci ratio: 3.583065e-03	ci left: 8.144737e-01	ci right 8.174010e-01	k: 220304	n:270000
OSTalpha   270000 perm   80 sec   (3394 perm/sec)   p_kst 8.159407e-01   p_cons 4.437037e-03   p_joint 2.783000e-01

Joint ci ratio: 1.193827e-02	ci left: 2.763482e-01	ci right 2.796707e-01	k: 77842	n:280000
Cons ci ratio: 1.104048e-01	ci left: 4.234603e-03	ci right 4.732881e-03	k: 1254	n:280000
KS ci ratio: 3.521529e-03	ci left: 8.142409e-01	ci right 8.171169e-01	k: 228391	n:280000
OSTalpha   280000 perm   84 sec   (3342 perm/sec)   p_kst 8.156821e-01   p_cons 4.478571e-03   p_joint 2.780071e-01

Joint ci ratio: 1.173135e-02	ci left: 2.763527e-01	ci right 2.796172e-01	k: 80615	n:290000
Cons ci ratio: 1.087294e-01	ci left: 4.219378e-03	ci right 4.707848e-03	k: 1293	n:290000
KS ci ratio: 3.461344e-03	ci left: 8.141733e-01	ci right 8.169997e-01	k: 236521	n:290000
OSTalpha   290000 perm   88 sec   (3299 perm/sec)   p_kst 8.155897e-01   p_cons 4.458621e-03   p_joint 2.779828e-01

Joint ci ratio: 1.153962e-02	ci left: 2.761910e-01	ci right 2.793999e-01	k: 83338	n:300000
Cons ci ratio: 1.070474e-01	ci left: 4.211710e-03	ci right 4.691274e-03	k: 1334	n:300000
KS ci ratio: 3.402672e-03	ci left: 8.142410e-01	ci right 8.170196e-01	k: 244690	n:300000
OSTalpha   300000 perm   92 sec   (3259 perm/sec)   p_kst 8.156333e-01   p_cons 4.446667e-03   p_joint 2.777933e-01

Joint ci ratio: 1.135955e-02	ci left: 2.759500e-01	ci right 2.791058e-01	k: 86033	n:310000
Cons ci ratio: 1.050965e-01	ci left: 4.232862e-03	ci right 4.705507e-03	k: 1384	n:310000
KS ci ratio: 3.350367e-03	ci left: 8.139909e-01	ci right 8.167258e-01	k: 252762	n:310000
OSTalpha   310000 perm   96 sec   (3220 perm/sec)   p_kst 8.153613e-01   p_cons 4.464516e-03   p_joint 2.775258e-01

Joint ci ratio: 1.117971e-02	ci left: 2.760083e-01	ci right 2.791144e-01	k: 88819	n:320000
Cons ci ratio: 1.033208e-01	ci left: 4.246677e-03	ci right 4.712367e-03	k: 1432	n:320000
KS ci ratio: 3.297281e-03	ci left: 8.140420e-01	ci right 8.167336e-01	k: 260925	n:320000
OSTalpha   320000 perm   101 sec   (3181 perm/sec)   p_kst 8.153906e-01   p_cons 4.475000e-03   p_joint 2.775594e-01

Joint ci ratio: 1.083776e-02	ci left: 2.823529e-01	ci right 2.854327e-01	k: 93684	n:330000
Cons ci ratio: 1.015633e-01	ci left: 4.265625e-03	ci right 4.724961e-03	k: 1482	n:330000
KS ci ratio: 3.244875e-03	ci left: 8.142543e-01	ci right 8.169038e-01	k: 269142	n:330000
OSTalpha   330000 perm   105 sec   (3144 perm/sec)   p_kst 8.155818e-01   p_cons 4.490909e-03   p_joint 2.838909e-01

Joint ci ratio: 1.084713e-02	ci left: 2.760100e-01	ci right 2.790232e-01	k: 94355	n:340000
Cons ci ratio: 1.000895e-01	ci left: 4.266314e-03	ci right 4.718666e-03	k: 1526	n:340000
KS ci ratio: 3.196482e-03	ci left: 8.143041e-01	ci right 8.169141e-01	k: 277308	n:340000
OSTalpha   340000 perm   109 sec   (3107 perm/sec)   p_kst 8.156118e-01   p_cons 4.488235e-03   p_joint 2.775147e-01

Joint ci ratio: 1.068558e-02	ci left: 2.762366e-01	ci right 2.792070e-01	k: 97202	n:350000
Cons ci ratio: 9.852067e-02	ci left: 4.280944e-03	ci right 4.727321e-03	k: 1575	n:350000
KS ci ratio: 3.150550e-03	ci left: 8.143169e-01	ci right 8.168893e-01	k: 285462	n:350000
OSTalpha   350000 perm   114 sec   (3071 perm/sec)   p_kst 8.156057e-01   p_cons 4.500000e-03   p_joint 2.777200e-01

Outputting figure to mutsig2_images.part000000000124/OSTalpha.3_1059_350000_0.81561_0.0045_0.27772.png
                gene_name: OSTalpha
               theta_stop: 0.099 
                    nperm: 350000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.0045 
      ci_cons_bounds_left: 0.0043 
     ci_cons_bounds_right: 0.0047 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.28 

Current progress: 62 percent done.
OTOP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.110775e-02	ci left: 3.608245e-01	ci right 3.798511e-01	k: 3703	n:10000
KS ci ratio: 1.500129e-02	ci left: 8.656000e-01	ci right 8.787824e-01	k: 8723	n:10000
OTOP2   10000 perm   2 sec   (5958 perm/sec)   p_kst 8.723000e-01   p_cons 3.703000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/OTOP2.3_1713_10000_0.8723_0.3703_1.png
                gene_name: OTOP2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
OTOP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.563461e-03	ci left: 9.899424e-01	ci right 9.935624e-01	k: 9919	n:10000
Cons ci ratio: 3.067289e-02	ci left: 6.106037e-01	ci right 6.297263e-01	k: 6202	n:10000
KS ci ratio: 5.809187e-03	ci left: 9.755703e-01	ci right 9.813463e-01	k: 9786	n:10000
OTOP3   10000 perm   2 sec   (5887 perm/sec)   p_kst 9.786000e-01   p_cons 6.202000e-01   p_joint 9.919000e-01

Outputting figure to mutsig2_images.part000000000124/OTOP3.3_1819_10000_0.9786_0.6202_0.9919.png
                gene_name: OTOP3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 66 percent done.
OTP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.232413e-02	ci left: 5.855029e-01	ci right 6.048417e-01	k: 5952	n:10000
Cons ci ratio: 7.237715e-02	ci left: 2.185242e-01	ci right 2.350353e-01	k: 2267	n:10000
KS ci ratio: 4.281715e-02	ci left: 4.461024e-01	ci right 4.657233e-01	k: 4559	n:10000
OTP   10000 perm   2 sec   (6175 perm/sec)   p_kst 4.559000e-01   p_cons 2.267000e-01   p_joint 5.952000e-01

Outputting figure to mutsig2_images.part000000000124/OTP.3_990_10000_0.4559_0.2267_0.5952.png
                gene_name: OTP
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 68 percent done.
OVGP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.778304e-02	ci left: 6.562561e-01	ci right 6.748474e-01	k: 6656	n:10000
Cons ci ratio: 3.337438e-02	ci left: 5.699534e-01	ci right 5.894001e-01	k: 5797	n:10000
KS ci ratio: 2.809562e-02	ci left: 6.512237e-01	ci right 6.698827e-01	k: 6606	n:10000
OVGP1   10000 perm   2 sec   (5947 perm/sec)   p_kst 6.606000e-01   p_cons 5.797000e-01   p_joint 6.656000e-01

Outputting figure to mutsig2_images.part000000000124/OVGP1.3_2081_10000_0.6606_0.5797_0.6656.png
                gene_name: OVGP1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 70 percent done.
OXCT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.114250e-02	ci left: 2.823074e-01	ci right 3.002143e-01	k: 2912	n:10000
Cons ci ratio: 3.069242e-02	ci left: 6.103023e-01	ci right 6.294278e-01	k: 6199	n:10000
KS ci ratio: 8.452535e-02	ci left: 1.694660e-01	ci right 1.845227e-01	k: 1769	n:10000
OXCT1   10000 perm   2 sec   (6002 perm/sec)   p_kst 1.769000e-01   p_cons 6.199000e-01   p_joint 2.912000e-01

Outputting figure to mutsig2_images.part000000000124/OXCT1.3_1631_10000_0.1769_0.6199_0.2912.png
                gene_name: OXCT1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 72 percent done.
OR8K5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.526275e-02	ci left: 4.187729e-01	ci right 4.382688e-01	k: 4285	n:10000
Cons ci ratio: 5.586816e-02	ci left: 3.205861e-01	ci right 3.391131e-01	k: 3298	n:10000
KS ci ratio: 3.346348e-02	ci left: 5.686497e-01	ci right 5.881046e-01	k: 5784	n:10000
OR8K5   10000 perm   1 sec   (7027 perm/sec)   p_kst 5.784000e-01   p_cons 3.298000e-01   p_joint 4.285000e-01

Outputting figure to mutsig2_images.part000000000124/OR8K5.2_928_10000_0.5784_0.3298_0.4285.png
                gene_name: OR8K5
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 74 percent done.
OR8S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
Cons ci ratio: 3.068591e-02	ci left: 6.104028e-01	ci right 6.295273e-01	k: 6200	n:10000
KS ci ratio: 7.991661e-01	ci left: 1.458544e-03	ci right 3.449143e-03	k: 23	n:10000
OR8S1   10000 perm   1 sec   (6749 perm/sec)   p_kst 2.300000e-03   p_cons 6.200000e-01   p_joint 8.600000e-03

Joint ci ratio: 1.512324e-01	ci left: 3.003745e-02	ci right 3.499968e-02	k: 649	n:20000
Cons ci ratio: 2.148801e-02	ci left: 6.178464e-01	ci right 6.313174e-01	k: 12492	n:20000
KS ci ratio: 5.651098e-01	ci left: 1.727187e-03	ci right 3.123791e-03	k: 47	n:20000
OR8S1   20000 perm   3 sec   (5917 perm/sec)   p_kst 2.350000e-03   p_cons 6.246000e-01   p_joint 3.245000e-02

Joint ci ratio: 2.509646e-01	ci left: 7.054391e-03	ci right 9.109257e-03	k: 241	n:30000
Cons ci ratio: 1.754891e-02	ci left: 6.189918e-01	ci right 6.299841e-01	k: 18735	n:30000
KS ci ratio: 4.679749e-01	ci left: 1.789965e-03	ci right 2.909908e-03	k: 69	n:30000
OR8S1   30000 perm   5 sec   (5572 perm/sec)   p_kst 2.300000e-03   p_cons 6.245000e-01   p_joint 8.033333e-03

Joint ci ratio: 2.269980e-01	ci left: 6.559940e-03	ci right 8.262746e-03	k: 295	n:40000
Cons ci ratio: 1.516716e-02	ci left: 6.206854e-01	ci right 6.301964e-01	k: 25018	n:40000
KS ci ratio: 4.082129e-01	ci left: 1.832071e-03	ci right 2.792472e-03	k: 91	n:40000
OR8S1   40000 perm   7 sec   (5365 perm/sec)   p_kst 2.275000e-03   p_cons 6.254500e-01   p_joint 7.375000e-03

Joint ci ratio: 2.163977e-01	ci left: 5.814398e-03	ci right 7.243801e-03	k: 325	n:50000
Cons ci ratio: 1.356396e-02	ci left: 6.212605e-01	ci right 6.297649e-01	k: 31276	n:50000
KS ci ratio: 3.651176e-01	ci left: 1.881076e-03	ci right 2.738348e-03	k: 114	n:50000
OR8S1   50000 perm   10 sec   (5084 perm/sec)   p_kst 2.280000e-03   p_cons 6.255200e-01   p_joint 6.500000e-03

Joint ci ratio: 1.991381e-01	ci left: 5.777565e-03	ci right 7.070874e-03	k: 384	n:60000
Cons ci ratio: 1.237434e-02	ci left: 6.219303e-01	ci right 6.296909e-01	k: 37549	n:60000
KS ci ratio: 3.229172e-01	ci left: 2.055015e-03	ci right 2.860984e-03	k: 146	n:60000
OR8S1   60000 perm   12 sec   (4985 perm/sec)   p_kst 2.433333e-03   p_cons 6.258167e-01   p_joint 6.400000e-03

Joint ci ratio: 1.768292e-01	ci left: 6.354766e-03	ci right 7.600915e-03	k: 487	n:70000
Cons ci ratio: 1.145650e-02	ci left: 6.222172e-01	ci right 6.294010e-01	k: 43807	n:70000
KS ci ratio: 3.038879e-01	ci left: 2.011533e-03	ci right 2.744978e-03	k: 165	n:70000
OR8S1   70000 perm   14 sec   (4893 perm/sec)   p_kst 2.357143e-03   p_cons 6.258143e-01   p_joint 6.957143e-03

Joint ci ratio: 1.673404e-01	ci left: 6.242217e-03	ci right 7.393986e-03	k: 544	n:80000
Cons ci ratio: 1.071520e-02	ci left: 6.225111e-01	ci right 6.292298e-01	k: 50070	n:80000
KS ci ratio: 2.855575e-01	ci left: 2.014779e-03	ci right 2.697113e-03	k: 187	n:80000
OR8S1   80000 perm   17 sec   (4809 perm/sec)   p_kst 2.337500e-03   p_cons 6.258750e-01   p_joint 6.800000e-03

Joint ci ratio: 1.560026e-01	ci left: 6.422968e-03	ci right 7.520283e-03	k: 626	n:90000
Cons ci ratio: 1.010786e-02	ci left: 6.224508e-01	ci right 6.287855e-01	k: 56306	n:90000
KS ci ratio: 2.682745e-01	ci left: 2.049426e-03	ci right 2.694429e-03	k: 212	n:90000
OR8S1   90000 perm   19 sec   (4717 perm/sec)   p_kst 2.355556e-03   p_cons 6.256222e-01   p_joint 6.955556e-03

Joint ci ratio: 1.568142e-01	ci left: 5.722855e-03	ci right 6.706116e-03	k: 620	n:100000
Cons ci ratio: 9.578570e-03	ci left: 6.231326e-01	ci right 6.291400e-01	k: 62614	n:100000
KS ci ratio: 2.532593e-01	ci left: 2.087507e-03	ci right 2.701925e-03	k: 238	n:100000
OR8S1   100000 perm   22 sec   (4628 perm/sec)   p_kst 2.380000e-03   p_cons 6.261400e-01   p_joint 6.200000e-03

Joint ci ratio: 1.488710e-01	ci left: 5.797162e-03	ci right 6.738246e-03	k: 688	n:110000
Cons ci ratio: 9.110025e-03	ci left: 6.244438e-01	ci right 6.301676e-01	k: 69004	n:110000
KS ci ratio: 2.418887e-01	ci left: 2.093859e-03	ci right 2.678327e-03	k: 261	n:110000
OR8S1   110000 perm   24 sec   (4544 perm/sec)   p_kst 2.372727e-03   p_cons 6.273091e-01   p_joint 6.254545e-03

Joint ci ratio: 1.421186e-01	ci left: 5.852091e-03	ci right 6.755350e-03	k: 755	n:120000
Cons ci ratio: 8.723138e-03	ci left: 6.245153e-01	ci right 6.299952e-01	k: 75271	n:120000
KS ci ratio: 2.327439e-01	ci left: 2.083967e-03	ci right 2.640519e-03	k: 282	n:120000
OR8S1   120000 perm   27 sec   (4468 perm/sec)   p_kst 2.350000e-03   p_cons 6.272583e-01   p_joint 6.291667e-03

Joint ci ratio: 1.406638e-01	ci left: 5.520586e-03	ci right 6.363220e-03	k: 771	n:130000
Cons ci ratio: 8.387210e-03	ci left: 6.242721e-01	ci right 6.295377e-01	k: 81498	n:130000
KS ci ratio: 2.256825e-01	ci left: 2.054170e-03	ci right 2.583805e-03	k: 300	n:130000
OR8S1   130000 perm   31 sec   (4188 perm/sec)   p_kst 2.307692e-03   p_cons 6.269077e-01   p_joint 5.930769e-03

Joint ci ratio: 1.323334e-01	ci left: 5.816227e-03	ci right 6.647280e-03	k: 871	n:140000
Cons ci ratio: 8.079541e-03	ci left: 6.245178e-01	ci right 6.295912e-01	k: 87788	n:140000
KS ci ratio: 2.155337e-01	ci left: 2.103152e-03	ci right 2.617806e-03	k: 329	n:140000
OR8S1   140000 perm   34 sec   (4091 perm/sec)   p_kst 2.350000e-03   p_cons 6.270571e-01   p_joint 6.221429e-03

Joint ci ratio: 1.284904e-01	ci left: 5.770277e-03	ci right 6.568993e-03	k: 924	n:150000
Cons ci ratio: 7.806758e-03	ci left: 6.245336e-01	ci right 6.294349e-01	k: 94048	n:150000
KS ci ratio: 2.095878e-01	ci left: 2.082864e-03	ci right 2.576688e-03	k: 348	n:150000
OR8S1   150000 perm   37 sec   (4041 perm/sec)   p_kst 2.320000e-03   p_cons 6.269867e-01   p_joint 6.160000e-03

Joint ci ratio: 1.243891e-01	ci left: 5.784882e-03	ci right 6.558177e-03	k: 986	n:160000
Cons ci ratio: 7.563497e-03	ci left: 6.243246e-01	ci right 6.290708e-01	k: 100272	n:160000
KS ci ratio: 2.011176e-01	ci left: 2.130552e-03	ci right 2.612763e-03	k: 378	n:160000
OR8S1   160000 perm   40 sec   (3993 perm/sec)   p_kst 2.362500e-03   p_cons 6.267000e-01   p_joint 6.162500e-03

Joint ci ratio: 1.237203e-01	ci left: 5.507243e-03	ci right 6.239174e-03	k: 997	n:170000
Cons ci ratio: 7.331308e-03	ci left: 6.248021e-01	ci right 6.294054e-01	k: 106608	n:170000
KS ci ratio: 1.935977e-01	ci left: 2.172983e-03	ci right 2.644243e-03	k: 408	n:170000
OR8S1   170000 perm   43 sec   (3944 perm/sec)   p_kst 2.400000e-03   p_cons 6.271059e-01   p_joint 5.864706e-03

Joint ci ratio: 1.203897e-01	ci left: 5.502897e-03	ci right 6.213160e-03	k: 1053	n:180000
Cons ci ratio: 7.123997e-03	ci left: 6.249168e-01	ci right 6.293902e-01	k: 112888	n:180000
KS ci ratio: 1.875059e-01	ci left: 2.195109e-03	ci right 2.654484e-03	k: 435	n:180000
OR8S1   180000 perm   47 sec   (3835 perm/sec)   p_kst 2.416667e-03   p_cons 6.271556e-01   p_joint 5.850000e-03

Joint ci ratio: 1.177419e-01	ci left: 5.458371e-03	ci right 6.146313e-03	k: 1101	n:190000
Cons ci ratio: 6.934034e-03	ci left: 6.249738e-01	ci right 6.293276e-01	k: 119159	n:190000
KS ci ratio: 1.837543e-01	ci left: 2.169909e-03	ci right 2.613912e-03	k: 453	n:190000
OR8S1   190000 perm   50 sec   (3770 perm/sec)   p_kst 2.384211e-03   p_cons 6.271526e-01   p_joint 5.794737e-03

Joint ci ratio: 1.142172e-01	ci left: 5.520455e-03	ci right 6.193989e-03	k: 1170	n:200000
Cons ci ratio: 6.756622e-03	ci left: 6.251565e-01	ci right 6.293998e-01	k: 125456	n:200000
KS ci ratio: 1.772330e-01	ci left: 2.223741e-03	ci right 2.660880e-03	k: 487	n:200000
OR8S1   200000 perm   54 sec   (3708 perm/sec)   p_kst 2.435000e-03   p_cons 6.272800e-01   p_joint 5.850000e-03

Joint ci ratio: 1.113530e-01	ci left: 5.539861e-03	ci right 6.197701e-03	k: 1231	n:210000
Cons ci ratio: 6.591225e-03	ci left: 6.253899e-01	ci right 6.295304e-01	k: 131767	n:210000
KS ci ratio: 1.723558e-01	ci left: 2.245351e-03	ci right 2.673329e-03	k: 515	n:210000
OR8S1   210000 perm   57 sec   (3669 perm/sec)   p_kst 2.452381e-03   p_cons 6.274619e-01   p_joint 5.861905e-03

Joint ci ratio: 1.091621e-01	ci left: 5.509049e-03	ci right 6.149531e-03	k: 1281	n:220000
Cons ci ratio: 6.438470e-03	ci left: 6.255259e-01	ci right 6.295708e-01	k: 138061	n:220000
KS ci ratio: 1.680152e-01	ci left: 2.260791e-03	ci right 2.679762e-03	k: 542	n:220000
OR8S1   220000 perm   61 sec   (3628 perm/sec)   p_kst 2.463636e-03   p_cons 6.275500e-01   p_joint 5.822727e-03

Joint ci ratio: 1.070149e-01	ci left: 5.489497e-03	ci right 6.114361e-03	k: 1333	n:230000
Cons ci ratio: 6.300727e-03	ci left: 6.252897e-01	ci right 6.292462e-01	k: 144272	n:230000
KS ci ratio: 1.644211e-01	ci left: 2.262503e-03	ci right 2.671935e-03	k: 566	n:230000
OR8S1   230000 perm   64 sec   (3589 perm/sec)   p_kst 2.460870e-03   p_cons 6.272696e-01   p_joint 5.795652e-03

Joint ci ratio: 1.226080e-02	ci left: 2.968609e-01	ci right 3.005273e-01	k: 71686	n:240000
Cons ci ratio: 5.388693e-03	ci left: 6.861212e-01	ci right 6.898326e-01	k: 165115	n:240000
KS ci ratio: 1.615974e-01	ci left: 2.248165e-03	ci right 2.647336e-03	k: 586	n:240000
OR8S1   240000 perm   68 sec   (3546 perm/sec)   p_kst 2.441667e-03   p_cons 6.879792e-01   p_joint 2.986917e-01

Joint ci ratio: 1.253341e-02	ci left: 2.794741e-01	ci right 2.830029e-01	k: 70309	n:250000
Cons ci ratio: 5.280154e-03	ci left: 6.861316e-01	ci right 6.897680e-01	k: 171988	n:250000
KS ci ratio: 1.578748e-01	ci left: 2.265763e-03	ci right 2.657914e-03	k: 614	n:250000
OR8S1   250000 perm   71 sec   (3503 perm/sec)   p_kst 2.456000e-03   p_cons 6.879520e-01   p_joint 2.812360e-01

Joint ci ratio: 1.267480e-02	ci left: 2.672386e-01	ci right 2.706512e-01	k: 69925	n:260000
Cons ci ratio: 5.179497e-03	ci left: 6.860110e-01	ci right 6.895772e-01	k: 178827	n:260000
KS ci ratio: 1.550035e-01	ci left: 2.263617e-03	ci right 2.647608e-03	k: 637	n:260000
OR8S1   260000 perm   75 sec   (3463 perm/sec)   p_kst 2.450000e-03   p_cons 6.877962e-01   p_joint 2.689423e-01

Joint ci ratio: 1.266855e-02	ci left: 2.601203e-01	ci right 2.634403e-01	k: 70680	n:270000
Cons ci ratio: 5.082105e-03	ci left: 6.860928e-01	ci right 6.895921e-01	k: 185718	n:270000
KS ci ratio: 1.508039e-01	ci left: 2.308016e-03	ci right 2.687974e-03	k: 673	n:270000
OR8S1   270000 perm   79 sec   (3406 perm/sec)   p_kst 2.492593e-03   p_cons 6.878444e-01   p_joint 2.617778e-01

Joint ci ratio: 1.243784e-02	ci left: 2.602258e-01	ci right 2.634862e-01	k: 73319	n:280000
Cons ci ratio: 4.988264e-03	ci left: 6.863195e-01	ci right 6.897552e-01	k: 192651	n:280000
KS ci ratio: 1.479765e-01	ci left: 2.314974e-03	ci right 2.688300e-03	k: 699	n:280000
OR8S1   280000 perm   83 sec   (3368 perm/sec)   p_kst 2.496429e-03   p_cons 6.880393e-01   p_joint 2.618536e-01

Joint ci ratio: 1.212497e-02	ci left: 2.633255e-01	ci right 2.665412e-01	k: 76830	n:290000
Cons ci ratio: 4.902269e-03	ci left: 6.862825e-01	ci right 6.896585e-01	k: 199512	n:290000
KS ci ratio: 1.452022e-01	ci left: 2.324836e-03	ci right 2.692115e-03	k: 726	n:290000
OR8S1   290000 perm   87 sec   (3330 perm/sec)   p_kst 2.503448e-03   p_cons 6.879724e-01   p_joint 2.649310e-01

Joint ci ratio: 1.221083e-02	ci left: 2.541263e-01	ci right 2.572517e-01	k: 76706	n:300000
Cons ci ratio: 4.817130e-03	ci left: 6.865556e-01	ci right 6.898741e-01	k: 206465	n:300000
KS ci ratio: 1.432464e-01	ci left: 2.311602e-03	ci right 2.671450e-03	k: 746	n:300000
OR8S1   300000 perm   91 sec   (3293 perm/sec)   p_kst 2.486667e-03   p_cons 6.882167e-01   p_joint 2.556867e-01

Joint ci ratio: 1.174967e-02	ci left: 2.626389e-01	ci right 2.657462e-01	k: 81899	n:310000
Cons ci ratio: 4.739089e-03	ci left: 6.865563e-01	ci right 6.898208e-01	k: 213339	n:310000
KS ci ratio: 1.406342e-01	ci left: 2.324150e-03	ci right 2.678801e-03	k: 774	n:310000
OR8S1   310000 perm   95 sec   (3255 perm/sec)   p_kst 2.496774e-03   p_cons 6.881903e-01   p_joint 2.641903e-01

Joint ci ratio: 1.168670e-02	ci left: 2.586087e-01	ci right 2.616519e-01	k: 83241	n:320000
Cons ci ratio: 4.664110e-03	ci left: 6.866137e-01	ci right 6.898267e-01	k: 220231	n:320000
KS ci ratio: 1.391184e-01	ci left: 2.302784e-03	ci right 2.650074e-03	k: 791	n:320000
OR8S1   320000 perm   99 sec   (3217 perm/sec)   p_kst 2.471875e-03   p_cons 6.882219e-01   p_joint 2.601281e-01

Joint ci ratio: 1.150984e-02	ci left: 2.585797e-01	ci right 2.615761e-01	k: 85825	n:330000
Cons ci ratio: 4.592257e-03	ci left: 6.866983e-01	ci right 6.898620e-01	k: 227133	n:330000
KS ci ratio: 1.366384e-01	ci left: 2.317852e-03	ci right 2.660675e-03	k: 820	n:330000
OR8S1   330000 perm   104 sec   (3179 perm/sec)   p_kst 2.484848e-03   p_cons 6.882818e-01   p_joint 2.600758e-01

Joint ci ratio: 1.067665e-02	ci left: 2.823965e-01	ci right 2.854307e-01	k: 96530	n:340000
Cons ci ratio: 4.523749e-03	ci left: 6.867665e-01	ci right 6.898832e-01	k: 234031	n:340000
KS ci ratio: 1.341284e-01	ci left: 2.337770e-03	ci right 2.676681e-03	k: 851	n:340000
OR8S1   340000 perm   108 sec   (3139 perm/sec)   p_kst 2.502941e-03   p_cons 6.883265e-01   p_joint 2.839118e-01

Joint ci ratio: 9.972057e-03	ci left: 3.047502e-01	ci right 3.078073e-01	k: 107197	n:350000
Cons ci ratio: 4.459347e-03	ci left: 6.867224e-01	ci right 6.897944e-01	k: 240891	n:350000
KS ci ratio: 1.310102e-01	ci left: 2.384238e-03	ci right 2.721225e-03	k: 892	n:350000
OR8S1   350000 perm   113 sec   (3092 perm/sec)   p_kst 2.548571e-03   p_cons 6.882600e-01   p_joint 3.062771e-01

Joint ci ratio: 9.857433e-03	ci left: 3.037015e-01	ci right 3.067128e-01	k: 109874	n:360000
Cons ci ratio: 4.398245e-03	ci left: 6.866199e-01	ci right 6.896493e-01	k: 247729	n:360000
KS ci ratio: 1.293554e-01	ci left: 2.379817e-03	ci right 2.711604e-03	k: 915	n:360000
OR8S1   360000 perm   118 sec   (3054 perm/sec)   p_kst 2.541667e-03   p_cons 6.881361e-01   p_joint 3.052056e-01

Joint ci ratio: 9.704452e-03	ci left: 3.045450e-01	ci right 3.075175e-01	k: 113231	n:370000
Cons ci ratio: 4.338358e-03	ci left: 6.866450e-01	ci right 6.896331e-01	k: 254612	n:370000
KS ci ratio: 1.266842e-01	ci left: 2.417531e-03	ci right 2.747093e-03	k: 954	n:370000
OR8S1   370000 perm   123 sec   (3015 perm/sec)   p_kst 2.578378e-03   p_cons 6.881405e-01   p_joint 3.060297e-01

Joint ci ratio: 9.592448e-03	ci left: 3.038333e-01	ci right 3.067644e-01	k: 116013	n:380000
Cons ci ratio: 4.280484e-03	ci left: 6.867060e-01	ci right 6.896543e-01	k: 261509	n:380000
KS ci ratio: 1.248666e-01	ci left: 2.425278e-03	ci right 2.750802e-03	k: 982	n:380000
OR8S1   380000 perm   127 sec   (2982 perm/sec)   p_kst 2.584211e-03   p_cons 6.881816e-01   p_joint 3.052974e-01

Joint ci ratio: 9.498515e-03	ci left: 3.025207e-01	ci right 3.054104e-01	k: 118546	n:390000
Cons ci ratio: 4.225296e-03	ci left: 6.867204e-01	ci right 6.896307e-01	k: 268389	n:390000
KS ci ratio: 1.234314e-01	ci left: 2.420234e-03	ci right 2.741074e-03	k: 1005	n:390000
OR8S1   390000 perm   132 sec   (2952 perm/sec)   p_kst 2.576923e-03   p_cons 6.881769e-01   p_joint 3.039641e-01

Joint ci ratio: 9.634010e-03	ci left: 2.913252e-01	ci right 2.941478e-01	k: 117094	n:400000
Cons ci ratio: 4.171848e-03	ci left: 6.867694e-01	ci right 6.896429e-01	k: 275283	n:400000
KS ci ratio: 1.219258e-01	ci left: 2.420310e-03	ci right 2.736964e-03	k: 1030	n:400000
OR8S1   400000 perm   137 sec   (2919 perm/sec)   p_kst 2.575000e-03   p_cons 6.882075e-01   p_joint 2.927350e-01

Joint ci ratio: 9.514922e-03	ci left: 2.913806e-01	ci right 2.941687e-01	k: 120037	n:410000
Cons ci ratio: 4.119349e-03	ci left: 6.869236e-01	ci right 6.897615e-01	k: 282221	n:410000
KS ci ratio: 1.205886e-01	ci left: 2.415674e-03	ci right 2.728008e-03	k: 1053	n:410000
OR8S1   410000 perm   142 sec   (2880 perm/sec)   p_kst 2.568293e-03   p_cons 6.883439e-01   p_joint 2.927732e-01

Joint ci ratio: 9.616529e-03	ci left: 2.821111e-01	ci right 2.848395e-01	k: 119059	n:420000
Cons ci ratio: 4.071582e-03	ci left: 6.867751e-01	ci right 6.895794e-01	k: 289035	n:420000
KS ci ratio: 1.194614e-01	ci left: 2.404346e-03	ci right 2.712104e-03	k: 1073	n:420000
OR8S1   420000 perm   147 sec   (2849 perm/sec)   p_kst 2.554762e-03   p_cons 6.881786e-01   p_joint 2.834738e-01

Joint ci ratio: 9.007541e-03	ci left: 3.043905e-01	ci right 3.071470e-01	k: 131480	n:430000
Cons ci ratio: 4.024151e-03	ci left: 6.867711e-01	ci right 6.895426e-01	k: 295908	n:430000
KS ci ratio: 1.178800e-01	ci left: 2.413872e-03	ci right 2.718474e-03	k: 1102	n:430000
OR8S1   430000 perm   153 sec   (2820 perm/sec)   p_kst 2.562791e-03   p_cons 6.881581e-01   p_joint 3.057674e-01

Joint ci ratio: 8.924737e-03	ci left: 3.034491e-01	ci right 3.061717e-01	k: 134116	n:440000
Cons ci ratio: 3.979436e-03	ci left: 6.866491e-01	ci right 6.893893e-01	k: 302729	n:440000
KS ci ratio: 1.158988e-01	ci left: 2.442852e-03	ci right 2.745576e-03	k: 1140	n:440000
OR8S1   440000 perm   158 sec   (2792 perm/sec)   p_kst 2.590909e-03   p_cons 6.880205e-01   p_joint 3.048091e-01

Joint ci ratio: 8.830114e-03	ci left: 3.032199e-01	ci right 3.059115e-01	k: 137054	n:450000
Cons ci ratio: 3.935953e-03	ci left: 6.865572e-01	ci right 6.892670e-01	k: 309561	n:450000
KS ci ratio: 1.147979e-01	ci left: 2.436044e-03	ci right 2.734863e-03	k: 1162	n:450000
OR8S1   450000 perm   163 sec   (2764 perm/sec)   p_kst 2.582222e-03   p_cons 6.879133e-01   p_joint 3.045644e-01

Joint ci ratio: 8.712349e-03	ci left: 3.042667e-01	ci right 3.069314e-01	k: 140575	n:460000
Cons ci ratio: 3.893353e-03	ci left: 6.865261e-01	ci right 6.892063e-01	k: 316419	n:460000
KS ci ratio: 1.137759e-01	ci left: 2.427433e-03	ci right 2.722366e-03	k: 1183	n:460000
OR8S1   460000 perm   169 sec   (2729 perm/sec)   p_kst 2.571739e-03   p_cons 6.878674e-01   p_joint 3.055978e-01

Joint ci ratio: 8.487835e-03	ci left: 3.108286e-01	ci right 3.134801e-01	k: 146712	n:470000
Cons ci ratio: 3.852183e-03	ci left: 6.864879e-01	ci right 6.891396e-01	k: 323273	n:470000
KS ci ratio: 1.123608e-01	ci left: 2.437811e-03	ci right 2.730077e-03	k: 1213	n:470000
OR8S1   470000 perm   174 sec   (2697 perm/sec)   p_kst 2.580851e-03   p_cons 6.878149e-01   p_joint 3.121532e-01

Joint ci ratio: 7.521552e-03	ci left: 3.600158e-01	ci right 3.627359e-01	k: 173460	n:480000
Cons ci ratio: 3.812532e-03	ci left: 6.864243e-01	ci right 6.890484e-01	k: 330114	n:480000
KS ci ratio: 1.109525e-01	ci left: 2.449803e-03	ci right 2.739586e-03	k: 1244	n:480000
OR8S1   480000 perm   180 sec   (2671 perm/sec)   p_kst 2.591667e-03   p_cons 6.877375e-01   p_joint 3.613750e-01

Joint ci ratio: 7.444826e-03	ci left: 3.600037e-01	ci right 3.626959e-01	k: 177061	n:490000
Cons ci ratio: 3.773847e-03	ci left: 6.863901e-01	ci right 6.889873e-01	k: 336968	n:490000
KS ci ratio: 1.095098e-01	ci left: 2.465299e-03	ci right 2.752878e-03	k: 1277	n:490000
OR8S1   490000 perm   185 sec   (2645 perm/sec)   p_kst 2.606122e-03   p_cons 6.876898e-01   p_joint 3.613490e-01

Joint ci ratio: 7.369858e-03	ci left: 3.600262e-01	ci right 3.626914e-01	k: 180679	n:500000
Cons ci ratio: 3.735846e-03	ci left: 6.864114e-01	ci right 6.889825e-01	k: 343849	n:500000
KS ci ratio: 1.082048e-01	ci left: 2.476305e-03	ci right 2.761507e-03	k: 1308	n:500000
OR8S1   500000 perm   191 sec   (2618 perm/sec)   p_kst 2.616000e-03   p_cons 6.876980e-01   p_joint 3.613580e-01

Joint ci ratio: 7.299529e-03	ci left: 3.598952e-01	ci right 3.625338e-01	k: 184219	n:510000
Cons ci ratio: 3.698110e-03	ci left: 6.865321e-01	ci right 6.890776e-01	k: 350781	n:510000
KS ci ratio: 1.074287e-01	ci left: 2.464000e-03	ci right 2.745620e-03	k: 1327	n:510000
OR8S1   510000 perm   197 sec   (2592 perm/sec)   p_kst 2.601961e-03   p_cons 6.878059e-01   p_joint 3.612137e-01

Joint ci ratio: 7.229970e-03	ci left: 3.598462e-01	ci right 3.624592e-01	k: 187799	n:520000
Cons ci ratio: 3.662364e-03	ci left: 6.865462e-01	ci right 6.890671e-01	k: 357660	n:520000
KS ci ratio: 1.067088e-01	ci left: 2.450303e-03	ci right 2.728363e-03	k: 1345	n:520000
OR8S1   520000 perm   203 sec   (2567 perm/sec)   p_kst 2.586538e-03   p_cons 6.878077e-01   p_joint 3.611519e-01

Joint ci ratio: 7.273974e-03	ci left: 3.527011e-01	ci right 3.552779e-01	k: 187614	n:530000
Cons ci ratio: 3.628016e-03	ci left: 6.865146e-01	ci right 6.890117e-01	k: 364515	n:530000
KS ci ratio: 1.056157e-01	ci left: 2.455498e-03	ci right 2.731116e-03	k: 1373	n:530000
OR8S1   530000 perm   208 sec   (2543 perm/sec)   p_kst 2.590566e-03   p_cons 6.877642e-01   p_joint 3.539887e-01

Joint ci ratio: 7.204380e-03	ci left: 3.528354e-01	ci right 3.553884e-01	k: 191220	n:540000
Cons ci ratio: 3.593874e-03	ci left: 6.865732e-01	ci right 6.890470e-01	k: 371418	n:540000
KS ci ratio: 1.045930e-01	ci left: 2.458712e-03	ci right 2.731854e-03	k: 1400	n:540000
OR8S1   540000 perm   215 sec   (2513 perm/sec)   p_kst 2.592593e-03   p_cons 6.878111e-01   p_joint 3.541111e-01

Joint ci ratio: 7.161516e-03	ci left: 3.513826e-01	ci right 3.539099e-01	k: 193955	n:550000
Cons ci ratio: 3.562185e-03	ci left: 6.864479e-01	ci right 6.888993e-01	k: 378221	n:550000
KS ci ratio: 1.035994e-01	ci left: 2.461821e-03	ci right 2.732552e-03	k: 1427	n:550000
OR8S1   550000 perm   221 sec   (2491 perm/sec)   p_kst 2.594545e-03   p_cons 6.876745e-01   p_joint 3.526455e-01

Joint ci ratio: 7.097966e-03	ci left: 3.513503e-01	ci right 3.538548e-01	k: 197457	n:560000
Cons ci ratio: 3.530497e-03	ci left: 6.864272e-01	ci right 6.888566e-01	k: 385080	n:560000
KS ci ratio: 1.027398e-01	ci left: 2.459611e-03	ci right 2.727719e-03	k: 1451	n:560000
OR8S1   560000 perm   227 sec   (2467 perm/sec)   p_kst 2.591071e-03   p_cons 6.876429e-01   p_joint 3.526018e-01

Joint ci ratio: 7.015602e-03	ci left: 3.526497e-01	ci right 3.551342e-01	k: 201718	n:570000
Cons ci ratio: 3.499582e-03	ci left: 6.864143e-01	ci right 6.888224e-01	k: 391943	n:570000
KS ci ratio: 1.017631e-01	ci left: 2.464327e-03	ci right 2.730243e-03	k: 1479	n:570000
OR8S1   570000 perm   233 sec   (2445 perm/sec)   p_kst 2.594737e-03   p_cons 6.876193e-01   p_joint 3.538912e-01

Joint ci ratio: 6.953127e-03	ci left: 3.527743e-01	ci right 3.552375e-01	k: 205323	n:580000
Cons ci ratio: 3.469383e-03	ci left: 6.864123e-01	ci right 6.887996e-01	k: 398812	n:580000
KS ci ratio: 1.010491e-01	ci left: 2.457127e-03	ci right 2.720295e-03	k: 1500	n:580000
OR8S1   580000 perm   239 sec   (2424 perm/sec)   p_kst 2.586207e-03   p_cons 6.876069e-01   p_joint 3.540052e-01

Joint ci ratio: 6.894463e-03	ci left: 3.527509e-01	ci right 3.551930e-01	k: 208843	n:590000
Cons ci ratio: 3.440155e-03	ci left: 6.863851e-01	ci right 6.887521e-01	k: 405666	n:590000
KS ci ratio: 1.000866e-01	ci left: 2.463397e-03	ci right 2.724576e-03	k: 1529	n:590000
OR8S1   590000 perm   246 sec   (2403 perm/sec)   p_kst 2.591525e-03   p_cons 6.875695e-01   p_joint 3.539712e-01

Joint ci ratio: 6.836213e-03	ci left: 3.527982e-01	ci right 3.552199e-01	k: 212405	n:600000
Cons ci ratio: 3.411376e-03	ci left: 6.863938e-01	ci right 6.887410e-01	k: 412541	n:600000
KS ci ratio: 9.931093e-02	ci left: 2.461343e-03	ci right 2.720164e-03	k: 1553	n:600000
OR8S1   600000 perm   252 sec   (2383 perm/sec)   p_kst 2.588333e-03   p_cons 6.875683e-01   p_joint 3.540083e-01

Outputting figure to mutsig2_images.part000000000124/OR8S1.2_1088_600000_0.0025883_0.68757_0.35401.png
                gene_name: OR8S1
               theta_stop: 0.099 
                    nperm: 600000 
                     p_ks: 0.0026 
        ci_ks_bounds_left: 0.0025 
       ci_ks_bounds_right: 0.0027 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 76 percent done.
OR9G4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.484792e-02	ci left: 3.287271e-01	ci right 3.473673e-01	k: 3380	n:10000
Cons ci ratio: 6.282798e-02	ci left: 2.713139e-01	ci right 2.890143e-01	k: 2801	n:10000
KS ci ratio: 7.215091e-02	ci left: 2.196098e-01	ci right 2.361490e-01	k: 2278	n:10000
OR9G4   10000 perm   2 sec   (6654 perm/sec)   p_kst 2.278000e-01   p_cons 2.801000e-01   p_joint 3.380000e-01

Outputting figure to mutsig2_images.part000000000124/OR9G4.2_988_10000_0.2278_0.2801_0.338.png
                gene_name: OR9G4
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 78 percent done.
OR9I1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.705138e-02	ci left: 3.114560e-01	ci right 3.298486e-01	k: 3206	n:10000
Cons ci ratio: 7.805671e-02	ci left: 1.934789e-01	ci right 2.092954e-01	k: 2013	n:10000
KS ci ratio: 1.675240e-02	ci left: 8.383675e-01	ci right 8.526306e-01	k: 8456	n:10000
OR9I1   10000 perm   2 sec   (5934 perm/sec)   p_kst 8.456000e-01   p_cons 2.013000e-01   p_joint 3.206000e-01

Outputting figure to mutsig2_images.part000000000124/OR9I1.2_949_10000_0.8456_0.2013_0.3206.png
                gene_name: OR9I1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 80 percent done.
ORAI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.024770e-02	ci left: 9.311281e-01	ci right 9.408160e-01	k: 9361	n:10000
Cons ci ratio: 4.721990e-02	ci left: 3.982459e-01	ci right 4.176078e-01	k: 4079	n:10000
KS ci ratio: 4.014615e-02	ci left: 4.781577e-01	ci right 4.978493e-01	k: 4880	n:10000
ORAI1   10000 perm   1 sec   (6989 perm/sec)   p_kst 4.880000e-01   p_cons 4.079000e-01   p_joint 9.361000e-01

Outputting figure to mutsig2_images.part000000000124/ORAI1.2_920_10000_0.488_0.4079_0.9361.png
                gene_name: ORAI1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 82 percent done.
ORM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.466463e-02	ci left: 3.302166e-01	ci right 3.488769e-01	k: 3395	n:10000
Cons ci ratio: 6.567074e-02	ci left: 2.539954e-01	ci right 2.713431e-01	k: 2626	n:10000
KS ci ratio: 4.426074e-02	ci left: 4.297410e-01	ci right 4.492943e-01	k: 4395	n:10000
ORM1   10000 perm   1 sec   (6888 perm/sec)   p_kst 4.395000e-01   p_cons 2.626000e-01   p_joint 3.395000e-01

Outputting figure to mutsig2_images.part000000000124/ORM1.2_630_10000_0.4395_0.2626_0.3395.png
                gene_name: ORM1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 84 percent done.
OSBPL8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.313571e-02	ci left: 8.930299e-01	ci right 9.049365e-01	k: 8991	n:10000
KS ci ratio: 2.663008e-02	ci left: 6.749868e-01	ci right 6.933059e-01	k: 6842	n:10000
OSBPL8   10000 perm   2 sec   (5757 perm/sec)   p_kst 6.842000e-01   p_cons 8.991000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/OSBPL8.2_2762_10000_0.6842_0.8991_1.png
                gene_name: OSBPL8
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
OSCP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.022950e-02	ci left: 7.815789e-01	ci right 7.976520e-01	k: 7897	n:10000
Cons ci ratio: 3.627716e-02	ci left: 5.287694e-01	ci right 5.484081e-01	k: 5386	n:10000
KS ci ratio: 1.523591e-02	ci left: 8.620253e-01	ci right 8.753591e-01	k: 8688	n:10000
OSCP1   10000 perm   2 sec   (6515 perm/sec)   p_kst 8.688000e-01   p_cons 5.386000e-01   p_joint 7.897000e-01

Outputting figure to mutsig2_images.part000000000124/OSCP1.2_1340_10000_0.8688_0.5386_0.7897.png
                gene_name: OSCP1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 88 percent done.
OSGIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.785116e-02	ci left: 3.918721e-01	ci right 4.111853e-01	k: 4015	n:10000
Cons ci ratio: 1.116726e-02	ci left: 9.196628e-01	ci right 9.300880e-01	k: 9250	n:10000
KS ci ratio: 7.964445e-02	ci left: 1.871758e-01	ci right 2.028023e-01	k: 1949	n:10000
OSGIN2   10000 perm   2 sec   (6353 perm/sec)   p_kst 1.949000e-01   p_cons 9.250000e-01   p_joint 4.015000e-01

Outputting figure to mutsig2_images.part000000000124/OSGIN2.2_1674_10000_0.1949_0.925_0.4015.png
                gene_name: OSGIN2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 90 percent done.
OTOP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.247362e-02	ci left: 4.500946e-01	ci right 4.697287e-01	k: 4599	n:10000
Cons ci ratio: 5.711691e-02	ci left: 3.109600e-01	ci right 3.293449e-01	k: 3201	n:10000
KS ci ratio: 3.552480e-02	ci left: 5.391843e-01	ci right 5.587872e-01	k: 5490	n:10000
OTOP1   10000 perm   2 sec   (6125 perm/sec)   p_kst 5.490000e-01   p_cons 3.201000e-01   p_joint 4.599000e-01

Outputting figure to mutsig2_images.part000000000124/OTOP1.2_1863_10000_0.549_0.3201_0.4599.png
                gene_name: OTOP1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 92 percent done.
OTUD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.454018e-02	ci left: 8.725497e-01	ci right 8.854286e-01	k: 8791	n:10000
KS ci ratio: 3.792921e-02	ci left: 5.065519e-01	ci right 5.262386e-01	k: 5164	n:10000
OTUD5   10000 perm   2 sec   (6328 perm/sec)   p_kst 5.164000e-01   p_cons 8.791000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000124/OTUD5.2_1752_10000_0.5164_0.8791_1.png
                gene_name: OTUD5
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
OTUD6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.457605e-02	ci left: 1.396231e-01	ci right 1.535834e-01	k: 1465	n:10000
Cons ci ratio: 1.042345e-01	ci left: 1.174050e-01	ci right 1.304149e-01	k: 1238	n:10000
KS ci ratio: 5.530440e-02	ci left: 3.250533e-01	ci right 3.436433e-01	k: 3343	n:10000
OTUD6A   10000 perm   1 sec   (6768 perm/sec)   p_kst 3.343000e-01   p_cons 1.238000e-01   p_joint 1.465000e-01

Joint ci ratio: 6.598237e-02	ci left: 1.450282e-01	ci right 1.549738e-01	k: 2999	n:20000
Cons ci ratio: 6.793886e-02	ci left: 1.378305e-01	ci right 1.475737e-01	k: 2853	n:20000
KS ci ratio: 3.924267e-02	ci left: 3.262691e-01	ci right 3.393795e-01	k: 6656	n:20000
OTUD6A   20000 perm   3 sec   (5941 perm/sec)   p_kst 3.328000e-01   p_cons 1.426500e-01   p_joint 1.499500e-01

Outputting figure to mutsig2_images.part000000000124/OTUD6A.2_871_20000_0.3328_0.14265_0.14995.png
                gene_name: OTUD6A
               theta_stop: 0.068 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 96 percent done.
OTUD7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.308428e-02	ci left: 7.338101e-01	ci right 7.510485e-01	k: 7425	n:10000
Cons ci ratio: 1.825522e-02	ci left: 8.141562e-01	ci right 8.292559e-01	k: 8218	n:10000
KS ci ratio: 5.437344e-02	ci left: 3.326001e-01	ci right 3.512920e-01	k: 3419	n:10000
OTUD7A   10000 perm   2 sec   (5172 perm/sec)   p_kst 3.419000e-01   p_cons 8.218000e-01   p_joint 7.425000e-01

Outputting figure to mutsig2_images.part000000000124/OTUD7A.2_2825_10000_0.3419_0.8218_0.7425.png
                gene_name: OTUD7A
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 98 percent done.
OVCA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.740949e-02	ci left: 6.622964e-01	ci right 6.808035e-01	k: 6716	n:10000
Cons ci ratio: 1.931867e-02	ci left: 7.966903e-01	ci right 8.123319e-01	k: 8046	n:10000
KS ci ratio: 6.561992e-02	ci left: 2.542921e-01	ci right 2.716462e-01	k: 2629	n:10000
OVCA2   10000 perm   2 sec   (6195 perm/sec)   p_kst 2.629000e-01   p_cons 8.046000e-01   p_joint 6.716000e-01

Outputting figure to mutsig2_images.part000000000124/OVCA2.2_692_10000_0.2629_0.8046_0.6716.png
                gene_name: OVCA2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000124
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 124 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1550>
Subject: Job 9894065: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1550>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000125> was used as the working directory.
Started at Sat Oct  6 00:22:25 2012
Results reported at Sat Oct  6 00:36:17 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000125.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000125.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 125  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000125.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    917.55 sec.
    Max Memory :      3578 MB
    Max Swap   :      5902 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
125
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 125
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 125: processing genes 11180 - 11269
Calculating significance of each gene.
Using projection method.
11180	OXCT2	8.444527e-01
11181	OXER1	3.341777e-01
11182	OXGR1	7.340108e-01
11183	OXNAD1	3.802601e-01
11184	OXR1	2.125159e-01
11185	OXSM	7.097508e-02
11186	OXSR1	8.787617e-01
11187	OXT	1
11188	OXTR	6.125739e-01
11189	P2RX1	6.369389e-01
11190	P2RX2	8.731852e-01
11191	P2RX3	6.054798e-01
11192	P2RX4	6.038434e-01
11193	P2RX5	8.963625e-01
11194	P2RX6	1
11195	P2RX7	3.359061e-01
11196	P2RY1	8.591575e-02
11197	P2RY10	1.003808e-03
11198	P2RY11	1
11199	P2RY12	1.048041e-01
11200	P2RY13	4.949797e-01
11201	P2RY14	1.346767e-03
11202	P2RY2	4.105510e-01
11203	P2RY4	9.119535e-02
11204	P2RY6	5.574081e-01
11205	P4HA1	8.750883e-01
11206	P4HA2	7.701146e-01
11207	P4HA3	7.410799e-01
11208	P4HB	6.877198e-01
11209	P4HTM	8.713172e-01
11210	PA2G4	5.528934e-01
11211	PAAF1	5.205535e-01
11212	PABPC1	7.505456e-01
11213	PABPC1L	7.426078e-01
11214	PABPC3	6.860190e-02
11215	PABPC4	6.765047e-02
11216	PABPC5	1.601907e-02
11217	PABPN1	4.734247e-01
11218	PABPN1L	1
11219	PACRG	1.101754e-01
11220	PACRGL	1
11221	PACS1	5.346468e-01
11222	PACS2	1
11223	PACSIN1	7.019435e-01
11224	PACSIN2	4.108747e-01
11225	PACSIN3	8.905287e-01
11226	PADI1	5.100883e-01
11227	PADI2	1
11228	PADI3	4.635796e-01
11229	PADI4	9.033718e-01
11230	PADI6	1.143618e-01
11231	PAEP	1
11232	PAF1	8.819287e-01
11233	PAFAH1B1	3.139666e-01
11234	PAFAH1B2	1
11235	PAFAH1B3	2.951463e-01
11236	PAFAH2	7.971487e-01
11237	PAG1	9.069046e-01
11238	PAGE1	3.873630e-01
11239	PAGE2	3.975707e-02
11240	PAGE2B	1
11241	PAGE4	1
11242	PAGE5	1
11243	PAH	1.942770e-01
11244	PAICS	7.881573e-01
11245	PAIP1	2.888468e-01
11246	PAIP2	1.422219e-01
11247	PAIP2B	2.409048e-01
11248	PAK1	1.414765e-01
11249	PAK1IP1	7.415714e-01
11250	PAK2	3.243989e-01
11251	PAK3	8.932939e-02
11252	PAK4	1
11253	PAK6	9.740635e-01
11254	PAK7	2.071952e-01
11255	PALB2	2.599659e-01
11256	PALLD	7.597896e-01
11257	PALM	1
11258	PALM2	1
11259	PALM2-AKAP2	6.440132e-01
11260	PALMD	1.537604e-02
11261	PAM	2.629494e-02
11262	PAMR1	6.465631e-01
11263	PAN2	9.970045e-01
11264	PAN3	1.511542e-01
11265	PANK1	8.442328e-01
11266	PANK2	1
11267	PANK3	3.731350e-01
11268	PANK4	9.748806e-01
11269	PANX1	4.893055e-01
Done

Running MutSig 2:
Scatter job 125: processing genes 11180 - 11269
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.038047e-01	ci left: 1.182847e-01	ci right 1.313348e-01	k: 1247	n:10000
Cons ci ratio: 1.656929e-01	ci left: 4.859368e-02	ci right 5.746898e-02	k: 529	n:10000
KS ci ratio: 3.605153e-02	ci left: 5.318734e-01	ci right 5.515023e-01	k: 5417	n:10000
PAM   10000 perm   2 sec   (4467 perm/sec)   p_kst 5.417000e-01   p_cons 5.290000e-02   p_joint 1.247000e-01

Joint ci ratio: 7.391069e-02	ci left: 1.187242e-01	ci right 1.278856e-01	k: 2465	n:20000
Cons ci ratio: 1.276899e-01	ci left: 4.211982e-02	ci right 4.791339e-02	k: 899	n:20000
KS ci ratio: 2.539659e-02	ci left: 5.366660e-01	ci right 5.505214e-01	k: 10872	n:20000
PAM   20000 perm   9 sec   (2272 perm/sec)   p_kst 5.436000e-01   p_cons 4.495000e-02   p_joint 1.232500e-01

Joint ci ratio: 5.815393e-02	ci left: 1.276950e-01	ci right 1.353765e-01	k: 3945	n:30000
Cons ci ratio: 1.056600e-01	ci left: 4.154431e-02	ci right 4.621121e-02	k: 1315	n:30000
KS ci ratio: 2.073529e-02	ci left: 5.379763e-01	ci right 5.492819e-01	k: 16309	n:30000
PAM   30000 perm   12 sec   (2533 perm/sec)   p_kst 5.436333e-01   p_cons 4.383333e-02   p_joint 1.315000e-01

Joint ci ratio: 5.039234e-02	ci left: 1.280789e-01	ci right 1.347247e-01	k: 5255	n:40000
Cons ci ratio: 9.218437e-02	ci left: 4.125280e-02	ci right 4.526385e-02	k: 1729	n:40000
KS ci ratio: 1.802394e-02	ci left: 5.369019e-01	ci right 5.466921e-01	k: 21672	n:40000
PAM   40000 perm   15 sec   (2725 perm/sec)   p_kst 5.418000e-01   p_cons 4.322500e-02   p_joint 1.313750e-01

Outputting figure to mutsig2_images.part000000000125/PAM.9_3025_40000_0.5418_0.043225_0.13137.png
                gene_name: PAM
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 2 percent done.
PALB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.428240e-03	ci left: 9.705838e-01	ci right 9.769362e-01	k: 9739	n:10000
KS ci ratio: 1.976591e-02	ci left: 7.892847e-01	ci right 8.051418e-01	k: 7973	n:10000
PALB2   10000 perm   2 sec   (4009 perm/sec)   p_kst 7.973000e-01   p_cons 9.739000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/PALB2.8_3613_10000_0.7973_0.9739_1.png
                gene_name: PALB2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
P2RY10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.958891e-01	ci left: 3.471871e-02	ci right 4.235312e-02	k: 384	n:10000
Cons ci ratio: 2.669171e-02	ci left: 6.739793e-01	ci right 6.923139e-01	k: 6832	n:10000
KS ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
P2RY10   10000 perm   2 sec   (5566 perm/sec)   p_kst 8.800000e-03   p_cons 6.832000e-01   p_joint 3.840000e-02

Joint ci ratio: 8.723533e-02	ci left: 8.768580e-02	ci right 9.573336e-02	k: 1833	n:20000
Cons ci ratio: 1.883310e-02	ci left: 6.776562e-01	ci right 6.905903e-01	k: 13683	n:20000
KS ci ratio: 3.020622e-01	ci left: 7.089521e-03	ci right 9.656492e-03	k: 166	n:20000
P2RY10   20000 perm   4 sec   (5101 perm/sec)   p_kst 8.300000e-03   p_cons 6.841500e-01   p_joint 9.165000e-02

Joint ci ratio: 9.851152e-02	ci left: 4.765843e-02	ci right 5.262915e-02	k: 1503	n:30000
Cons ci ratio: 1.535302e-02	ci left: 6.795418e-01	ci right 6.900890e-01	k: 20545	n:30000
KS ci ratio: 2.463869e-01	ci left: 7.335823e-03	ci right 9.427729e-03	k: 250	n:30000
P2RY10   30000 perm   6 sec   (4684 perm/sec)   p_kst 8.333333e-03   p_cons 6.848333e-01   p_joint 5.010000e-02

Joint ci ratio: 1.034914e-01	ci left: 3.283029e-02	ci right 3.643768e-02	k: 1384	n:40000
Cons ci ratio: 1.301460e-02	ci left: 6.894575e-01	ci right 6.985143e-01	k: 27760	n:40000
KS ci ratio: 2.132711e-01	ci left: 7.481591e-03	ci right 9.290869e-03	k: 334	n:40000
P2RY10   40000 perm   9 sec   (4414 perm/sec)   p_kst 8.350000e-03   p_cons 6.940000e-01   p_joint 3.460000e-02

Joint ci ratio: 1.186609e-01	ci left: 2.009114e-02	ci right 2.264485e-02	k: 1067	n:50000
Cons ci ratio: 1.159955e-02	ci left: 6.914450e-01	ci right 6.995323e-01	k: 34775	n:50000
KS ci ratio: 1.935128e-01	ci left: 7.352032e-03	ci right 8.945866e-03	k: 406	n:50000
P2RY10   50000 perm   12 sec   (4240 perm/sec)   p_kst 8.120000e-03   p_cons 6.955000e-01   p_joint 2.134000e-02

Joint ci ratio: 7.679680e-02	ci left: 4.001618e-02	ci right 4.322835e-02	k: 2496	n:60000
Cons ci ratio: 1.062226e-02	ci left: 6.904622e-01	ci right 6.978523e-01	k: 41650	n:60000
KS ci ratio: 1.759997e-01	ci left: 7.478004e-03	ci right 8.936833e-03	k: 491	n:60000
P2RY10   60000 perm   15 sec   (4105 perm/sec)   p_kst 8.183333e-03   p_cons 6.941667e-01   p_joint 4.160000e-02

Joint ci ratio: 7.231521e-02	ci left: 3.882700e-02	ci right 4.175412e-02	k: 2819	n:70000
Cons ci ratio: 9.849423e-03	ci left: 6.900838e-01	ci right 6.969287e-01	k: 48546	n:70000
KS ci ratio: 1.623748e-01	ci left: 7.586368e-03	ci right 8.940583e-03	k: 577	n:70000
P2RY10   70000 perm   17 sec   (4068 perm/sec)   p_kst 8.242857e-03   p_cons 6.935143e-01   p_joint 4.027143e-02

Joint ci ratio: 7.223963e-02	ci left: 3.421610e-02	ci right 3.679273e-02	k: 2839	n:80000
Cons ci ratio: 9.192215e-03	ci left: 6.912823e-01	ci right 6.976786e-01	k: 55559	n:80000
KS ci ratio: 1.509200e-01	ci left: 7.731071e-03	ci right 9.004968e-03	k: 668	n:80000
P2RY10   80000 perm   20 sec   (4031 perm/sec)   p_kst 8.350000e-03   p_cons 6.944875e-01   p_joint 3.548750e-02

Joint ci ratio: 7.168649e-02	ci left: 3.100164e-02	ci right 3.331754e-02	k: 2893	n:90000
Cons ci ratio: 8.677376e-03	ci left: 6.909330e-01	ci right 6.969656e-01	k: 62456	n:90000
KS ci ratio: 1.412166e-01	ci left: 7.889117e-03	ci right 9.098439e-03	k: 763	n:90000
P2RY10   90000 perm   23 sec   (3988 perm/sec)   p_kst 8.477778e-03   p_cons 6.939556e-01   p_joint 3.214444e-02

Joint ci ratio: 6.906404e-02	ci left: 3.013105e-02	ci right 3.229625e-02	k: 3120	n:100000
Cons ci ratio: 8.062606e-03	ci left: 6.998763e-01	ci right 7.055519e-01	k: 70272	n:100000
KS ci ratio: 1.335650e-01	ci left: 7.969307e-03	ci right 9.119471e-03	k: 853	n:100000
P2RY10   100000 perm   26 sec   (3921 perm/sec)   p_kst 8.530000e-03   p_cons 7.027200e-01   p_joint 3.120000e-02

Joint ci ratio: 6.853488e-02	ci left: 2.789108e-02	ci right 2.987932e-02	k: 3176	n:110000
Cons ci ratio: 7.680908e-03	ci left: 7.003628e-01	ci right 7.057720e-01	k: 77338	n:110000
KS ci ratio: 1.279968e-01	ci left: 7.913119e-03	ci right 9.003944e-03	k: 929	n:110000
P2RY10   110000 perm   28 sec   (3872 perm/sec)   p_kst 8.445455e-03   p_cons 7.030727e-01   p_joint 2.887273e-02

Joint ci ratio: 6.873097e-02	ci left: 2.548382e-02	ci right 2.730584e-02	k: 3166	n:120000
Cons ci ratio: 7.678708e-03	ci left: 6.820792e-01	ci right 6.873452e-01	k: 82166	n:120000
KS ci ratio: 1.222772e-01	ci left: 7.972164e-03	ci right 9.018464e-03	k: 1018	n:120000
P2RY10   120000 perm   31 sec   (3818 perm/sec)   p_kst 8.483333e-03   p_cons 6.847167e-01   p_joint 2.638333e-02

Joint ci ratio: 6.885834e-02	ci left: 2.348488e-02	ci right 2.516720e-02	k: 3161	n:130000
Cons ci ratio: 7.379329e-03	ci left: 6.820738e-01	ci right 6.871333e-01	k: 88999	n:130000
KS ci ratio: 1.174757e-01	ci left: 7.993168e-03	ci right 8.998171e-03	k: 1103	n:130000
P2RY10   130000 perm   34 sec   (3769 perm/sec)   p_kst 8.484615e-03   p_cons 6.846077e-01   p_joint 2.431538e-02

Joint ci ratio: 6.922261e-02	ci left: 2.161713e-02	ci right 2.317416e-02	k: 3134	n:140000
Cons ci ratio: 7.112911e-03	ci left: 6.820440e-01	ci right 6.869198e-01	k: 95828	n:140000
KS ci ratio: 1.138280e-01	ci left: 7.921620e-03	ci right 8.884621e-03	k: 1175	n:140000
P2RY10   140000 perm   38 sec   (3720 perm/sec)   p_kst 8.392857e-03   p_cons 6.844857e-01   p_joint 2.238571e-02

Joint ci ratio: 6.763026e-02	ci left: 2.116526e-02	ci right 2.265330e-02	k: 3285	n:150000
Cons ci ratio: 6.873091e-03	ci left: 6.820412e-01	ci right 6.867517e-01	k: 102660	n:150000
KS ci ratio: 1.104556e-01	ci left: 7.866516e-03	ci right 8.792640e-03	k: 1248	n:150000
P2RY10   150000 perm   41 sec   (3666 perm/sec)   p_kst 8.320000e-03   p_cons 6.844000e-01   p_joint 2.190000e-02

Joint ci ratio: 6.191089e-02	ci left: 2.368644e-02	ci right 2.520586e-02	k: 3910	n:160000
Cons ci ratio: 6.792041e-03	ci left: 6.732184e-01	ci right 6.778127e-01	k: 108083	n:160000
KS ci ratio: 1.073252e-01	ci left: 7.824754e-03	ci right 8.718202e-03	k: 1322	n:160000
P2RY10   160000 perm   44 sec   (3615 perm/sec)   p_kst 8.262500e-03   p_cons 6.755187e-01   p_joint 2.443750e-02

Joint ci ratio: 5.538506e-02	ci left: 2.783019e-02	ci right 2.942124e-02	k: 4865	n:170000
Cons ci ratio: 6.584845e-03	ci left: 6.735808e-01	ci right 6.780367e-01	k: 114888	n:170000
KS ci ratio: 1.038858e-01	ci left: 7.874187e-03	ci right 8.742707e-03	k: 1411	n:170000
P2RY10   170000 perm   48 sec   (3553 perm/sec)   p_kst 8.300000e-03   p_cons 6.758118e-01   p_joint 2.861765e-02

Joint ci ratio: 5.993784e-02	ci left: 2.251494e-02	ci right 2.391158e-02	k: 4177	n:180000
Cons ci ratio: 6.259004e-03	ci left: 6.832992e-01	ci right 6.875949e-01	k: 123381	n:180000
KS ci ratio: 1.006558e-01	ci left: 7.934783e-03	ci right 8.781166e-03	k: 1503	n:180000
P2RY10   180000 perm   51 sec   (3501 perm/sec)   p_kst 8.350000e-03   p_cons 6.854500e-01   p_joint 2.320556e-02

Joint ci ratio: 5.920471e-02	ci left: 2.188450e-02	ci right 2.322485e-02	k: 4284	n:190000
Cons ci ratio: 6.091511e-03	ci left: 6.833962e-01	ci right 6.875771e-01	k: 130243	n:190000
KS ci ratio: 9.777129e-02	ci left: 7.979102e-03	ci right 8.804423e-03	k: 1593	n:190000
P2RY10   190000 perm   55 sec   (3436 perm/sec)   p_kst 8.384211e-03   p_cons 6.854895e-01   p_joint 2.254737e-02

Outputting figure to mutsig2_images.part000000000125/P2RY10.7_1024_190000_0.0083842_0.68549_0.022547.png
                gene_name: P2RY10
               theta_stop: 0.098 
                    nperm: 190000 
                     p_ks: 0.0084 
        ci_ks_bounds_left: 0.0080 
       ci_ks_bounds_right: 0.0088 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 6 percent done.
PADI6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.977666e-01	ci left: 3.405205e-02	ci right 4.162024e-02	k: 377	n:10000
Cons ci ratio: 5.585553e-02	ci left: 3.206853e-01	ci right 3.392138e-01	k: 3299	n:10000
KS ci ratio: 2.108706e-01	ci left: 2.986994e-02	ci right 3.700523e-02	k: 333	n:10000
PADI6   10000 perm   2 sec   (5744 perm/sec)   p_kst 3.330000e-02   p_cons 3.299000e-01   p_joint 3.770000e-02

Joint ci ratio: 1.116540e-01	ci left: 5.479998e-02	ci right 6.132925e-02	k: 1160	n:20000
Cons ci ratio: 3.821827e-02	ci left: 3.380614e-01	ci right 3.512838e-01	k: 6893	n:20000
KS ci ratio: 1.471848e-01	ci left: 3.172413e-02	ci right 3.681244e-02	k: 684	n:20000
PADI6   20000 perm   4 sec   (4994 perm/sec)   p_kst 3.420000e-02   p_cons 3.446500e-01   p_joint 5.800000e-02

Joint ci ratio: 1.116012e-01	ci left: 3.729147e-02	ci right 4.173161e-02	k: 1184	n:30000
Cons ci ratio: 3.270825e-02	ci left: 3.184393e-01	ci right 3.290616e-01	k: 9712	n:30000
KS ci ratio: 1.196055e-01	ci left: 3.249563e-02	ci right 3.666180e-02	k: 1036	n:30000
PADI6   30000 perm   7 sec   (4404 perm/sec)   p_kst 3.453333e-02   p_cons 3.237333e-01   p_joint 3.946667e-02

Joint ci ratio: 9.103535e-02	ci left: 4.227977e-02	ci right 4.633672e-02	k: 1771	n:40000
Cons ci ratio: 2.741475e-02	ci left: 3.335880e-01	ci right 3.428855e-01	k: 13529	n:40000
KS ci ratio: 1.033755e-01	ci left: 3.290342e-02	ci right 3.651454e-02	k: 1387	n:40000
PADI6   40000 perm   9 sec   (4287 perm/sec)   p_kst 3.467500e-02   p_cons 3.382250e-01   p_joint 4.427500e-02

Joint ci ratio: 8.152100e-02	ci left: 4.239530e-02	ci right 4.601786e-02	k: 2209	n:50000
Cons ci ratio: 2.536274e-02	ci left: 3.191806e-01	ci right 3.273999e-01	k: 16164	n:50000
KS ci ratio: 9.293474e-02	ci left: 3.276093e-02	ci right 3.597343e-02	k: 1717	n:50000
PADI6   50000 perm   12 sec   (4195 perm/sec)   p_kst 3.434000e-02   p_cons 3.232800e-01   p_joint 4.418000e-02

Outputting figure to mutsig2_images.part000000000125/PADI6.7_2150_50000_0.03434_0.32328_0.04418.png
                gene_name: PADI6
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 8 percent done.
PAK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.590375e-02	ci left: 8.517184e-01	ci right 8.654720e-01	k: 8587	n:10000
Cons ci ratio: 2.889536e-02	ci left: 6.384467e-01	ci right 6.572671e-01	k: 6479	n:10000
KS ci ratio: 2.987749e-02	ci left: 6.229630e-01	ci right 6.419597e-01	k: 6325	n:10000
PAK7   10000 perm   2 sec   (5274 perm/sec)   p_kst 6.325000e-01   p_cons 6.479000e-01   p_joint 8.587000e-01

Outputting figure to mutsig2_images.part000000000125/PAK7.7_2192_10000_0.6325_0.6479_0.8587.png
                gene_name: PAK7
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 10 percent done.
PALMD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.978760e-02	ci left: 6.243702e-01	ci right 6.433517e-01	k: 6339	n:10000
Cons ci ratio: 6.369573e-02	ci left: 2.658691e-01	ci right 2.834624e-01	k: 2746	n:10000
KS ci ratio: 1.942915e-02	ci left: 7.948639e-01	ci right 8.105594e-01	k: 8028	n:10000
PALMD   10000 perm   2 sec   (4906 perm/sec)   p_kst 8.028000e-01   p_cons 2.746000e-01   p_joint 6.339000e-01

Outputting figure to mutsig2_images.part000000000125/PALMD.7_1688_10000_0.8028_0.2746_0.6339.png
                gene_name: PALMD
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 12 percent done.
PAN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.209154e-01	ci left: 1.234131e-02	ci right 1.714746e-02	k: 146	n:10000
Cons ci ratio: 8.263127e-02	ci left: 1.760548e-01	ci right 1.913299e-01	k: 1836	n:10000
KS ci ratio: 4.310919e-01	ci left: 6.437624e-03	ci right 1.005764e-02	k: 81	n:10000
PAN3   10000 perm   2 sec   (4734 perm/sec)   p_kst 8.100000e-03   p_cons 1.836000e-01   p_joint 1.460000e-02

Joint ci ratio: 1.782866e-01	ci left: 2.149287e-02	ci right 2.574718e-02	k: 471	n:20000
Cons ci ratio: 5.796656e-02	ci left: 1.806777e-01	ci right 1.915137e-01	k: 3721	n:20000
KS ci ratio: 3.076857e-01	ci left: 6.812321e-03	ci right 9.333850e-03	k: 160	n:20000
PAN3   20000 perm   5 sec   (4235 perm/sec)   p_kst 8.000000e-03   p_cons 1.860500e-01   p_joint 2.355000e-02

Joint ci ratio: 2.036446e-01	ci left: 1.095686e-02	ci right 1.347226e-02	k: 365	n:30000
Cons ci ratio: 4.746555e-02	ci left: 1.808182e-01	ci right 1.896428e-01	k: 5556	n:30000
KS ci ratio: 2.536194e-01	ci left: 6.898193e-03	ci right 8.932175e-03	k: 236	n:30000
PAN3   30000 perm   7 sec   (4037 perm/sec)   p_kst 7.866667e-03   p_cons 1.852000e-01   p_joint 1.216667e-02

Joint ci ratio: 1.541956e-01	ci left: 1.467284e-02	ci right 1.714816e-02	k: 635	n:40000
Cons ci ratio: 4.097192e-02	ci left: 1.823956e-01	ci right 1.900500e-01	k: 7448	n:40000
KS ci ratio: 2.217739e-01	ci left: 6.890396e-03	ci right 8.632207e-03	k: 309	n:40000
PAN3   40000 perm   10 sec   (3913 perm/sec)   p_kst 7.725000e-03   p_cons 1.862000e-01   p_joint 1.587500e-02

Joint ci ratio: 1.267851e-01	ci left: 1.756939e-02	ci right 1.996694e-02	k: 937	n:50000
Cons ci ratio: 3.660358e-02	ci left: 1.831537e-01	ci right 1.900027e-01	k: 9328	n:50000
KS ci ratio: 1.995320e-01	ci left: 6.895484e-03	ci right 8.442500e-03	k: 382	n:50000
PAN3   50000 perm   13 sec   (3797 perm/sec)   p_kst 7.640000e-03   p_cons 1.865600e-01   p_joint 1.874000e-02

Joint ci ratio: 9.753252e-02	ci left: 2.493654e-02	ci right 2.750956e-02	k: 1572	n:60000
Cons ci ratio: 3.335907e-02	ci left: 1.839532e-01	ci right 1.902104e-01	k: 11224	n:60000
KS ci ratio: 1.836840e-01	ci left: 6.841129e-03	ci right 8.240472e-03	k: 451	n:60000
PAN3   60000 perm   16 sec   (3716 perm/sec)   p_kst 7.516667e-03   p_cons 1.870667e-01   p_joint 2.620000e-02

Joint ci ratio: 1.090384e-01	ci left: 1.713919e-02	ci right 1.912961e-02	k: 1268	n:70000
Cons ci ratio: 3.091332e-02	ci left: 1.839044e-01	ci right 1.896930e-01	k: 13075	n:70000
KS ci ratio: 1.664902e-01	ci left: 7.202708e-03	ci right 8.524290e-03	k: 549	n:70000
PAN3   70000 perm   19 sec   (3647 perm/sec)   p_kst 7.842857e-03   p_cons 1.867857e-01   p_joint 1.811429e-02

Joint ci ratio: 1.247724e-01	ci left: 1.142654e-02	ci right 1.295914e-02	k: 974	n:80000
Cons ci ratio: 2.888113e-02	ci left: 1.844648e-01	ci right 1.898829e-01	k: 14973	n:80000
KS ci ratio: 1.533663e-01	ci left: 7.478491e-03	ci right 8.732575e-03	k: 647	n:80000
PAN3   80000 perm   22 sec   (3579 perm/sec)   p_kst 8.087500e-03   p_cons 1.871625e-01   p_joint 1.217500e-02

Joint ci ratio: 1.265752e-01	ci left: 9.876614e-03	ci right 1.122188e-02	k: 948	n:90000
Cons ci ratio: 2.724408e-02	ci left: 1.844572e-01	ci right 1.895630e-01	k: 16830	n:90000
KS ci ratio: 1.439003e-01	ci left: 7.589018e-03	ci right 8.776343e-03	k: 735	n:90000
PAN3   90000 perm   26 sec   (3518 perm/sec)   p_kst 8.166667e-03   p_cons 1.870000e-01   p_joint 1.053333e-02

Joint ci ratio: 1.209197e-01	ci left: 9.770757e-03	ci right 1.103788e-02	k: 1039	n:100000
Cons ci ratio: 2.576564e-02	ci left: 1.855327e-01	ci right 1.903854e-01	k: 18795	n:100000
KS ci ratio: 1.371751e-01	ci left: 7.544093e-03	ci right 8.664720e-03	k: 809	n:100000
PAN3   100000 perm   29 sec   (3458 perm/sec)   p_kst 8.090000e-03   p_cons 1.879500e-01   p_joint 1.039000e-02

Joint ci ratio: 1.049740e-01	ci left: 1.186063e-02	ci right 1.318344e-02	k: 1376	n:110000
Cons ci ratio: 2.452321e-02	ci left: 1.861834e-01	ci right 1.908149e-01	k: 20734	n:110000
KS ci ratio: 1.304230e-01	ci left: 7.613943e-03	ci right 8.684961e-03	k: 895	n:110000
PAN3   110000 perm   32 sec   (3402 perm/sec)   p_kst 8.136364e-03   p_cons 1.884909e-01   p_joint 1.250909e-02

Joint ci ratio: 1.070532e-01	ci left: 1.045810e-02	ci right 1.164904e-02	k: 1325	n:120000
Cons ci ratio: 2.348814e-02	ci left: 1.861661e-01	ci right 1.905990e-01	k: 22605	n:120000
KS ci ratio: 1.248354e-01	ci left: 7.640975e-03	ci right 8.666341e-03	k: 977	n:120000
PAN3   120000 perm   36 sec   (3351 perm/sec)   p_kst 8.141667e-03   p_cons 1.883750e-01   p_joint 1.104167e-02

Joint ci ratio: 1.059745e-01	ci left: 9.863115e-03	ci right 1.097427e-02	k: 1353	n:130000
Cons ci ratio: 2.260640e-02	ci left: 1.857184e-01	ci right 1.899725e-01	k: 24419	n:130000
KS ci ratio: 1.193432e-01	ci left: 7.739316e-03	ci right 8.728962e-03	k: 1069	n:130000
PAN3   130000 perm   39 sec   (3303 perm/sec)   p_kst 8.223077e-03   p_cons 1.878385e-01   p_joint 1.040769e-02

Joint ci ratio: 1.032400e-01	ci left: 9.666342e-03	ci right 1.072552e-02	k: 1426	n:140000
Cons ci ratio: 2.180218e-02	ci left: 1.855437e-01	ci right 1.896407e-01	k: 26262	n:140000
KS ci ratio: 1.157287e-01	ci left: 7.657924e-03	ci right 8.605475e-03	k: 1137	n:140000
PAN3   140000 perm   43 sec   (3257 perm/sec)   p_kst 8.121429e-03   p_cons 1.875857e-01   p_joint 1.018571e-02

Joint ci ratio: 9.456150e-02	ci left: 1.079076e-02	ci right 1.186825e-02	k: 1698	n:150000
Cons ci ratio: 2.110212e-02	ci left: 1.850495e-01	ci right 1.890026e-01	k: 28053	n:150000
KS ci ratio: 1.117716e-01	ci left: 7.678515e-03	ci right 8.593984e-03	k: 1219	n:150000
PAN3   150000 perm   47 sec   (3210 perm/sec)   p_kst 8.126667e-03   p_cons 1.870200e-01   p_joint 1.132000e-02

Joint ci ratio: 9.205501e-02	ci left: 1.069010e-02	ci right 1.172772e-02	k: 1792	n:160000
Cons ci ratio: 2.046075e-02	ci left: 1.846874e-01	ci right 1.885115e-01	k: 29855	n:160000
KS ci ratio: 1.071620e-01	ci left: 7.849088e-03	ci right 8.743867e-03	k: 1326	n:160000
PAN3   160000 perm   51 sec   (3158 perm/sec)   p_kst 8.287500e-03   p_cons 1.865938e-01   p_joint 1.120000e-02

Joint ci ratio: 8.532024e-02	ci left: 1.174113e-02	ci right 1.279325e-02	k: 2084	n:170000
Cons ci ratio: 1.987874e-02	ci left: 1.843051e-01	ci right 1.880115e-01	k: 31646	n:170000
KS ci ratio: 1.042963e-01	ci left: 7.811152e-03	ci right 8.676332e-03	k: 1400	n:170000
PAN3   170000 perm   54 sec   (3120 perm/sec)   p_kst 8.235294e-03   p_cons 1.861529e-01   p_joint 1.225882e-02

Joint ci ratio: 7.140693e-02	ci left: 1.587832e-02	ci right 1.705955e-02	k: 2963	n:180000
Cons ci ratio: 1.931852e-02	ci left: 1.843597e-01	ci right 1.879615e-01	k: 33508	n:180000
KS ci ratio: 1.015101e-01	ci left: 7.799378e-03	ci right 8.638799e-03	k: 1478	n:180000
PAN3   180000 perm   59 sec   (3064 perm/sec)   p_kst 8.211111e-03   p_cons 1.861556e-01   p_joint 1.646111e-02

Joint ci ratio: 6.940848e-02	ci left: 1.593713e-02	ci right 1.708822e-02	k: 3136	n:190000
Cons ci ratio: 1.880968e-02	ci left: 1.843050e-01	ci right 1.878098e-01	k: 35350	n:190000
KS ci ratio: 9.893588e-02	ci left: 7.789118e-03	ci right 8.604941e-03	k: 1556	n:190000
PAN3   190000 perm   63 sec   (3017 perm/sec)   p_kst 8.189474e-03   p_cons 1.860526e-01   p_joint 1.650526e-02

Outputting figure to mutsig2_images.part000000000125/PAN3.7_2740_190000_0.0081895_0.18605_0.016505.png
                gene_name: PAN3
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.0082 
        ci_ks_bounds_left: 0.0078 
       ci_ks_bounds_right: 0.0086 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 14 percent done.
OXR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.173417e-02	ci left: 1.472713e-01	ci right 1.615306e-01	k: 1543	n:10000
Cons ci ratio: 1.060498e-01	ci left: 1.137899e-01	ci right 1.266323e-01	k: 1201	n:10000
KS ci ratio: 7.217141e-02	ci left: 2.195112e-01	ci right 2.360477e-01	k: 2277	n:10000
OXR1   10000 perm   2 sec   (4745 perm/sec)   p_kst 2.277000e-01   p_cons 1.201000e-01   p_joint 1.543000e-01

Joint ci ratio: 7.035839e-02	ci left: 1.296028e-01	ci right 1.391038e-01	k: 2686	n:20000
Cons ci ratio: 7.490142e-02	ci left: 1.159203e-01	ci right 1.249904e-01	k: 2408	n:20000
KS ci ratio: 5.137669e-02	ci left: 2.196243e-01	ci right 2.312556e-01	k: 4508	n:20000
OXR1   20000 perm   5 sec   (4342 perm/sec)   p_kst 2.254000e-01   p_cons 1.204000e-01   p_joint 1.343000e-01

Outputting figure to mutsig2_images.part000000000125/OXR1.6_2804_20000_0.2254_0.1204_0.1343.png
                gene_name: OXR1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 16 percent done.
P2RY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.585446e-02	ci left: 1.650429e-01	ci right 1.799484e-01	k: 1724	n:10000
Cons ci ratio: 3.864930e-02	ci left: 4.971503e-01	ci right 5.168456e-01	k: 5070	n:10000
KS ci ratio: 1.138976e-01	ci left: 9.983694e-02	ci right 1.119937e-01	k: 1058	n:10000
P2RY1   10000 perm   2 sec   (5154 perm/sec)   p_kst 1.058000e-01   p_cons 5.070000e-01   p_joint 1.724000e-01

Joint ci ratio: 4.708664e-02	ci left: 2.512522e-01	ci right 2.634184e-01	k: 5146	n:20000
Cons ci ratio: 2.637701e-02	ci left: 5.178008e-01	ci right 5.316920e-01	k: 10495	n:20000
KS ci ratio: 8.017988e-02	ci left: 1.024537e-01	ci right 1.110610e-01	k: 2134	n:20000
P2RY1   20000 perm   4 sec   (4673 perm/sec)   p_kst 1.067000e-01   p_cons 5.247500e-01   p_joint 2.573000e-01

Outputting figure to mutsig2_images.part000000000125/P2RY1.6_1126_20000_0.1067_0.52475_0.2573.png
                gene_name: P2RY1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 18 percent done.
P2RY14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.802118e-02	ci left: 3.042144e-01	ci right 3.224944e-01	k: 3133	n:10000
Cons ci ratio: 5.781514e-03	ci left: 9.757832e-01	ci right 9.815332e-01	k: 9788	n:10000
KS ci ratio: 8.083070e-02	ci left: 1.826474e-01	ci right 1.981334e-01	k: 1903	n:10000
P2RY14   10000 perm   2 sec   (6482 perm/sec)   p_kst 1.903000e-01   p_cons 9.788000e-01   p_joint 3.133000e-01

Outputting figure to mutsig2_images.part000000000125/P2RY14.6_1021_10000_0.1903_0.9788_0.3133.png
                gene_name: P2RY14
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 20 percent done.
P2RY4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.673863e-02	ci left: 3.138374e-01	ci right 3.322658e-01	k: 3230	n:10000
Cons ci ratio: 1.021285e-01	ci left: 1.218044e-01	ci right 1.350129e-01	k: 1283	n:10000
KS ci ratio: 5.465244e-02	ci left: 3.303159e-01	ci right 3.489775e-01	k: 3396	n:10000
P2RY4   10000 perm   2 sec   (5440 perm/sec)   p_kst 3.396000e-01   p_cons 1.283000e-01   p_joint 3.230000e-01

Joint ci ratio: 4.633489e-02	ci left: 2.574044e-01	ci right 2.696644e-01	k: 5270	n:20000
Cons ci ratio: 6.990824e-02	ci left: 1.310804e-01	ci right 1.406257e-01	k: 2716	n:20000
KS ci ratio: 3.884839e-02	ci left: 3.307466e-01	ci right 3.439007e-01	k: 6746	n:20000
P2RY4   20000 perm   4 sec   (5142 perm/sec)   p_kst 3.373000e-01   p_cons 1.358000e-01   p_joint 2.635000e-01

Outputting figure to mutsig2_images.part000000000125/P2RY4.6_1102_20000_0.3373_0.1358_0.2635.png
                gene_name: P2RY4
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 22 percent done.
PABPC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.792695e-02	ci left: 3.049087e-01	ci right 3.231997e-01	k: 3140	n:10000
Cons ci ratio: 1.006498e-01	ci left: 1.250322e-01	ci right 1.383831e-01	k: 1316	n:10000
KS ci ratio: 2.520369e-02	ci left: 6.984744e-01	ci right 7.164046e-01	k: 7075	n:10000
PABPC3   10000 perm   2 sec   (5136 perm/sec)   p_kst 7.075000e-01   p_cons 1.316000e-01   p_joint 3.140000e-01

Joint ci ratio: 4.227525e-02	ci left: 2.942497e-01	ci right 3.070083e-01	k: 6012	n:20000
Cons ci ratio: 7.115585e-02	ci left: 1.270421e-01	ci right 1.364652e-01	k: 2634	n:20000
KS ci ratio: 1.803765e-02	ci left: 6.961101e-01	ci right 7.088310e-01	k: 14050	n:20000
PABPC3   20000 perm   4 sec   (4634 perm/sec)   p_kst 7.025000e-01   p_cons 1.317000e-01   p_joint 3.006000e-01

Outputting figure to mutsig2_images.part000000000125/PABPC3.6_1900_20000_0.7025_0.1317_0.3006.png
                gene_name: PABPC3
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 24 percent done.
PABPC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.775478e-02	ci left: 8.222885e-01	ci right 8.371189e-01	k: 8298	n:10000
Cons ci ratio: 2.805179e-02	ci left: 6.519282e-01	ci right 6.705778e-01	k: 6613	n:10000
KS ci ratio: 3.060783e-02	ci left: 6.116083e-01	ci right 6.307211e-01	k: 6212	n:10000
PABPC5   10000 perm   2 sec   (5380 perm/sec)   p_kst 6.212000e-01   p_cons 6.613000e-01   p_joint 8.298000e-01

Outputting figure to mutsig2_images.part000000000125/PABPC5.6_1153_10000_0.6212_0.6613_0.8298.png
                gene_name: PABPC5
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 25 percent done.
OXSM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.298081e-02	ci left: 2.156624e-01	ci right 2.320987e-01	k: 2238	n:10000
Cons ci ratio: 8.941686e-02	ci left: 1.539442e-01	ci right 1.684538e-01	k: 1611	n:10000
KS ci ratio: 6.601149e-02	ci left: 2.520172e-01	ci right 2.693224e-01	k: 2606	n:10000
OXSM   10000 perm   2 sec   (6056 perm/sec)   p_kst 2.606000e-01   p_cons 1.611000e-01   p_joint 2.238000e-01

Outputting figure to mutsig2_images.part000000000125/OXSM.5_1388_10000_0.2606_0.1611_0.2238.png
                gene_name: OXSM
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 27 percent done.
PABPC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.419881e-02	ci left: 2.100392e-01	ci right 2.263253e-01	k: 2181	n:10000
Cons ci ratio: 2.514556e-03	ci left: 9.945571e-01	ci right 9.971408e-01	k: 9960	n:10000
KS ci ratio: 1.024491e-01	ci left: 1.211198e-01	ci right 1.342979e-01	k: 1276	n:10000
PABPC4   10000 perm   2 sec   (5732 perm/sec)   p_kst 1.276000e-01   p_cons 9.960000e-01   p_joint 2.181000e-01

Joint ci ratio: 5.591743e-02	ci left: 1.917050e-01	ci right 2.027831e-01	k: 3944	n:20000
Cons ci ratio: 1.711730e-03	ci left: 9.953016e-01	ci right 9.970493e-01	k: 19925	n:20000
KS ci ratio: 7.260678e-02	ci left: 1.225624e-01	ci right 1.318463e-01	k: 2543	n:20000
PABPC4   20000 perm   4 sec   (5051 perm/sec)   p_kst 1.271500e-01   p_cons 9.962500e-01   p_joint 1.972000e-01

Outputting figure to mutsig2_images.part000000000125/PABPC4.5_2043_20000_0.12715_0.99625_0.1972.png
                gene_name: PABPC4
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 29 percent done.
PACS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.742813e-02	ci left: 6.619944e-01	ci right 6.805058e-01	k: 6713	n:10000
Cons ci ratio: 2.837173e-02	ci left: 6.467962e-01	ci right 6.655127e-01	k: 6562	n:10000
KS ci ratio: 4.137052e-02	ci left: 4.631735e-01	ci right 4.828422e-01	k: 4730	n:10000
PACS1   10000 perm   2 sec   (4628 perm/sec)   p_kst 4.730000e-01   p_cons 6.562000e-01   p_joint 6.713000e-01

Outputting figure to mutsig2_images.part000000000125/PACS1.5_2988_10000_0.473_0.6562_0.6713.png
                gene_name: PACS1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 31 percent done.
PACSIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.983219e-02	ci left: 2.311621e-01	ci right 2.479899e-01	k: 2395	n:10000
Cons ci ratio: 1.214319e-02	ci left: 9.067909e-01	ci right 9.179675e-01	k: 9125	n:10000
KS ci ratio: 1.127694e-01	ci left: 1.016890e-01	ci right 1.139406e-01	k: 1077	n:10000
PACSIN2   10000 perm   2 sec   (5841 perm/sec)   p_kst 1.077000e-01   p_cons 9.125000e-01   p_joint 2.395000e-01

Joint ci ratio: 5.405468e-02	ci left: 2.025412e-01	ci right 2.138438e-01	k: 4163	n:20000
Cons ci ratio: 9.005584e-03	ci left: 9.003937e-01	ci right 9.085883e-01	k: 18091	n:20000
KS ci ratio: 7.935020e-02	ci left: 1.044183e-01	ci right 1.130958e-01	k: 2174	n:20000
PACSIN2   20000 perm   4 sec   (5064 perm/sec)   p_kst 1.087000e-01   p_cons 9.045500e-01   p_joint 2.081500e-01

Outputting figure to mutsig2_images.part000000000125/PACSIN2.5_1501_20000_0.1087_0.90455_0.20815.png
                gene_name: PACSIN2
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 33 percent done.
PAK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.767305e-02	ci left: 8.236106e-01	ci right 8.383961e-01	k: 8311	n:10000
Cons ci ratio: 1.896174e-02	ci left: 8.025773e-01	ci right 8.180415e-01	k: 8104	n:10000
KS ci ratio: 2.329554e-02	ci left: 7.302734e-01	ci right 7.475872e-01	k: 7390	n:10000
PAK1   10000 perm   2 sec   (5401 perm/sec)   p_kst 7.390000e-01   p_cons 8.104000e-01   p_joint 8.311000e-01

Outputting figure to mutsig2_images.part000000000125/PAK1.5_1747_10000_0.739_0.8104_0.8311.png
                gene_name: PAK1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 35 percent done.
PAK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.365803e-01	ci left: 7.088017e-02	ci right 8.136835e-02	k: 760	n:10000
Cons ci ratio: 2.268173e-01	ci left: 2.570435e-02	ci right 3.237377e-02	k: 289	n:10000
KS ci ratio: 5.535413e-02	ci left: 3.246562e-01	ci right 3.432406e-01	k: 3339	n:10000
PAK3   10000 perm   2 sec   (5692 perm/sec)   p_kst 3.339000e-01   p_cons 2.890000e-02   p_joint 7.600000e-02

Joint ci ratio: 8.053930e-02	ci left: 1.016188e-01	ci right 1.101961e-01	k: 2117	n:20000
Cons ci ratio: 1.570719e-01	ci left: 2.782361e-02	ci right 3.261426e-02	k: 603	n:20000
KS ci ratio: 3.863217e-02	ci left: 3.332345e-01	ci right 3.464121e-01	k: 6796	n:20000
PAK3   20000 perm   4 sec   (5003 perm/sec)   p_kst 3.398000e-01   p_cons 3.015000e-02   p_joint 1.058500e-01

Joint ci ratio: 7.161540e-02	ci left: 8.753895e-02	ci right 9.407388e-02	k: 2723	n:30000
Cons ci ratio: 1.278863e-01	ci left: 2.842155e-02	ci right 3.233676e-02	k: 910	n:30000
KS ci ratio: 3.152078e-02	ci left: 3.347714e-01	ci right 3.455262e-01	k: 10204	n:30000
PAK3   30000 perm   6 sec   (4797 perm/sec)   p_kst 3.401333e-01   p_cons 3.033333e-02   p_joint 9.076667e-02

Joint ci ratio: 6.697939e-02	ci left: 7.622704e-02	ci right 8.153428e-02	k: 3154	n:40000
Cons ci ratio: 1.107375e-01	ci left: 2.869052e-02	ci right 3.207811e-02	k: 1214	n:40000
KS ci ratio: 2.745000e-02	ci left: 3.330150e-01	ci right 3.423086e-01	k: 13506	n:40000
PAK3   40000 perm   9 sec   (4643 perm/sec)   p_kst 3.376500e-01   p_cons 3.035000e-02   p_joint 7.885000e-02

Joint ci ratio: 5.642863e-02	ci left: 8.553082e-02	ci right 9.051713e-02	k: 4400	n:50000
Cons ci ratio: 9.833958e-02	ci left: 2.928335e-02	ci right 3.233145e-02	k: 1539	n:50000
KS ci ratio: 2.455504e-02	ci left: 3.334545e-01	ci right 3.417643e-01	k: 16880	n:50000
PAK3   50000 perm   11 sec   (4529 perm/sec)   p_kst 3.376000e-01   p_cons 3.078000e-02   p_joint 8.800000e-02

Outputting figure to mutsig2_images.part000000000125/PAK3.5_1807_50000_0.3376_0.03078_0.088.png
                gene_name: PAK3
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.091 

Current progress: 37 percent done.
PALLD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.963134e-02	ci left: 7.915161e-01	ci right 8.073091e-01	k: 7995	n:10000
Cons ci ratio: 5.819690e-02	ci left: 3.029251e-01	ci right 3.211845e-01	k: 3120	n:10000
KS ci ratio: 9.848396e-03	ci left: 9.358910e-01	ci right 9.452503e-01	k: 9407	n:10000
PALLD   10000 perm   2 sec   (4415 perm/sec)   p_kst 9.407000e-01   p_cons 3.120000e-01   p_joint 7.995000e-01

Outputting figure to mutsig2_images.part000000000125/PALLD.5_4136_10000_0.9407_0.312_0.7995.png
                gene_name: PALLD
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 39 percent done.
P2RY12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.248696e-02	ci left: 7.438177e-01	ci right 7.608351e-01	k: 7524	n:10000
Cons ci ratio: 4.673464e-02	ci left: 4.032266e-01	ci right 4.226242e-01	k: 4129	n:10000
KS ci ratio: 3.076409e-02	ci left: 6.091973e-01	ci right 6.283334e-01	k: 6188	n:10000
P2RY12   10000 perm   2 sec   (6153 perm/sec)   p_kst 6.188000e-01   p_cons 4.129000e-01   p_joint 7.524000e-01

Outputting figure to mutsig2_images.part000000000125/P2RY12.4_1033_10000_0.6188_0.4129_0.7524.png
                gene_name: P2RY12
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 41 percent done.
PACRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.959290e-03	ci left: 9.744004e-01	ci right 9.803170e-01	k: 9775	n:10000
Cons ci ratio: 2.951228e-02	ci left: 6.286928e-01	ci right 6.476267e-01	k: 6382	n:10000
KS ci ratio: 1.761639e-02	ci left: 8.245259e-01	ci right 8.392802e-01	k: 8320	n:10000
PACRG   10000 perm   2 sec   (5952 perm/sec)   p_kst 8.320000e-01   p_cons 6.382000e-01   p_joint 9.775000e-01

Outputting figure to mutsig2_images.part000000000125/PACRG.4_915_10000_0.832_0.6382_0.9775.png
                gene_name: PACRG
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 43 percent done.
PADI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.811321e-02	ci left: 2.402520e-01	ci right 2.572946e-01	k: 2487	n:10000
Cons ci ratio: 1.131226e-01	ci left: 1.011041e-01	ci right 1.133258e-01	k: 1071	n:10000
KS ci ratio: 4.834243e-02	ci left: 3.869933e-01	ci right 4.062670e-01	k: 3966	n:10000
PADI1   10000 perm   2 sec   (5425 perm/sec)   p_kst 3.966000e-01   p_cons 1.071000e-01   p_joint 2.487000e-01

Joint ci ratio: 4.327114e-02	ci left: 2.846113e-01	ci right 2.972495e-01	k: 5818	n:20000
Cons ci ratio: 7.965873e-02	ci left: 1.036815e-01	ci right 1.123328e-01	k: 2159	n:20000
KS ci ratio: 3.456446e-02	ci left: 3.845773e-01	ci right 3.981543e-01	k: 7827	n:20000
PADI1   20000 perm   4 sec   (4789 perm/sec)   p_kst 3.913500e-01   p_cons 1.079500e-01   p_joint 2.909000e-01

Outputting figure to mutsig2_images.part000000000125/PADI1.4_2056_20000_0.39135_0.10795_0.2909.png
                gene_name: PADI1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 45 percent done.
PAH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.425064e-02	ci left: 7.143166e-01	ci right 7.319532e-01	k: 7232	n:10000
Cons ci ratio: 2.357332e-02	ci left: 7.256263e-01	ci right 7.430370e-01	k: 7344	n:10000
KS ci ratio: 3.411962e-02	ci left: 5.591248e-01	ci right 5.786351e-01	k: 5689	n:10000
PAH   10000 perm   2 sec   (5846 perm/sec)   p_kst 5.689000e-01   p_cons 7.344000e-01   p_joint 7.232000e-01

Outputting figure to mutsig2_images.part000000000125/PAH.4_1411_10000_0.5689_0.7344_0.7232.png
                gene_name: PAH
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 47 percent done.
PAIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.967861e-02	ci left: 6.260790e-01	ci right 6.450419e-01	k: 6356	n:10000
Cons ci ratio: 9.874809e-03	ci left: 9.355802e-01	ci right 9.449613e-01	k: 9404	n:10000
KS ci ratio: 4.659038e-02	ci left: 4.047210e-01	ci right 4.241289e-01	k: 4144	n:10000
PAIP1   10000 perm   2 sec   (5613 perm/sec)   p_kst 4.144000e-01   p_cons 9.404000e-01   p_joint 6.356000e-01

Outputting figure to mutsig2_images.part000000000125/PAIP1.4_1484_10000_0.4144_0.9404_0.6356.png
                gene_name: PAIP1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 49 percent done.
PALM2-AKAP2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.711691e-02	ci left: 3.109600e-01	ci right 3.293449e-01	k: 3201	n:10000
Cons ci ratio: 3.085544e-02	ci left: 6.077911e-01	ci right 6.269405e-01	k: 6174	n:10000
KS ci ratio: 6.594306e-02	ci left: 2.524128e-01	ci right 2.697266e-01	k: 2610	n:10000
PALM2-AKAP2   10000 perm   2 sec   (5002 perm/sec)   p_kst 2.610000e-01   p_cons 6.174000e-01   p_joint 3.201000e-01

Outputting figure to mutsig2_images.part000000000125/PALM2-AKAP2.3_3356_10000_0.261_0.6174_0.3201.png
                gene_name: PALM2-AKAP2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 51 percent done.
PAMR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.310533e-02	ci left: 3.432297e-01	ci right 3.620562e-01	k: 3526	n:10000
Cons ci ratio: 4.848410e-02	ci left: 3.855995e-01	ci right 4.048615e-01	k: 3952	n:10000
KS ci ratio: 7.914066e-02	ci left: 1.891452e-01	ci right 2.048317e-01	k: 1969	n:10000
PAMR1   10000 perm   2 sec   (5735 perm/sec)   p_kst 1.969000e-01   p_cons 3.952000e-01   p_joint 3.526000e-01

Outputting figure to mutsig2_images.part000000000125/PAMR1.4_2262_10000_0.1969_0.3952_0.3526.png
                gene_name: PAMR1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 53 percent done.
OXER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.929916e-02	ci left: 2.949926e-01	ci right 3.131216e-01	k: 3040	n:10000
Cons ci ratio: 1.090626e-01	ci left: 1.081269e-01	ci right 1.206987e-01	k: 1143	n:10000
KS ci ratio: 1.905420e-02	ci left: 8.010545e-01	ci right 8.165651e-01	k: 8089	n:10000
OXER1   10000 perm   2 sec   (5924 perm/sec)   p_kst 8.089000e-01   p_cons 1.143000e-01   p_joint 3.040000e-01

Joint ci ratio: 3.431187e-02	ci left: 3.880661e-01	ci right 4.016644e-01	k: 7897	n:20000
Cons ci ratio: 7.259044e-02	ci left: 1.226116e-01	ci right 1.318970e-01	k: 2544	n:20000
KS ci ratio: 1.352092e-02	ci left: 8.022695e-01	ci right 8.132408e-01	k: 16156	n:20000
OXER1   20000 perm   4 sec   (5301 perm/sec)   p_kst 8.078000e-01   p_cons 1.272000e-01   p_joint 3.948500e-01

Outputting figure to mutsig2_images.part000000000125/OXER1.3_1276_20000_0.8078_0.1272_0.39485.png
                gene_name: OXER1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 55 percent done.
OXTR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.798399e-02	ci left: 1.937745e-01	ci right 2.095997e-01	k: 2016	n:10000
Cons ci ratio: 8.974894e-02	ci left: 1.529626e-01	ci right 1.674359e-01	k: 1601	n:10000
KS ci ratio: 7.152117e-02	ci left: 2.226698e-01	ci right 2.392872e-01	k: 2309	n:10000
OXTR   10000 perm   2 sec   (6213 perm/sec)   p_kst 2.309000e-01   p_cons 1.601000e-01   p_joint 2.016000e-01

Outputting figure to mutsig2_images.part000000000125/OXTR.3_1178_10000_0.2309_0.1601_0.2016.png
                gene_name: OXTR
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 57 percent done.
P2RX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.997964e-02	ci left: 7.857354e-01	ci right 8.016931e-01	k: 7938	n:10000
Cons ci ratio: 5.720887e-02	ci left: 3.102655e-01	ci right 3.286398e-01	k: 3194	n:10000
KS ci ratio: 3.761157e-02	ci left: 5.107537e-01	ci right 5.304343e-01	k: 5206	n:10000
P2RX4   10000 perm   2 sec   (6187 perm/sec)   p_kst 5.206000e-01   p_cons 3.194000e-01   p_joint 7.938000e-01

Outputting figure to mutsig2_images.part000000000125/P2RX4.3_1215_10000_0.5206_0.3194_0.7938.png
                gene_name: P2RX4
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 59 percent done.
P2RX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.890802e-02	ci left: 6.382456e-01	ci right 6.570684e-01	k: 6477	n:10000
Cons ci ratio: 4.727859e-02	ci left: 3.976482e-01	ci right 4.170058e-01	k: 4073	n:10000
KS ci ratio: 3.470045e-02	ci left: 5.508059e-01	ci right 5.703587e-01	k: 5606	n:10000
P2RX7   10000 perm   2 sec   (5432 perm/sec)   p_kst 5.606000e-01   p_cons 4.073000e-01   p_joint 6.477000e-01

Outputting figure to mutsig2_images.part000000000125/P2RX7.3_1840_10000_0.5606_0.4073_0.6477.png
                gene_name: P2RX7
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 61 percent done.
P2RY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.274153e-02	ci left: 8.985712e-01	ci right 9.101920e-01	k: 9045	n:10000
Cons ci ratio: 3.180359e-02	ci left: 5.933315e-01	ci right 6.126085e-01	k: 6030	n:10000
KS ci ratio: 4.097438e-02	ci left: 4.679675e-01	ci right 4.876454e-01	k: 4778	n:10000
P2RY2   10000 perm   2 sec   (6498 perm/sec)   p_kst 4.778000e-01   p_cons 6.030000e-01   p_joint 9.045000e-01

Outputting figure to mutsig2_images.part000000000125/P2RY2.3_1138_10000_0.4778_0.603_0.9045.png
                gene_name: P2RY2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 63 percent done.
PABPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.703829e-02	ci left: 3.115552e-01	ci right 3.299493e-01	k: 3207	n:10000
Cons ci ratio: 2.522805e-02	ci left: 6.980709e-01	ci right 7.160083e-01	k: 7071	n:10000
KS ci ratio: 6.555229e-02	ci left: 2.546878e-01	ci right 2.720503e-01	k: 2633	n:10000
PABPC1   10000 perm   2 sec   (5480 perm/sec)   p_kst 2.633000e-01   p_cons 7.071000e-01   p_joint 3.207000e-01

Outputting figure to mutsig2_images.part000000000125/PABPC1.3_1967_10000_0.2633_0.7071_0.3207.png
                gene_name: PABPC1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 65 percent done.
PABPC1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.614451e-02	ci left: 6.829473e-01	ci right 7.011407e-01	k: 6921	n:10000
Cons ci ratio: 4.100724e-02	ci left: 4.675680e-01	ci right 4.872452e-01	k: 4774	n:10000
KS ci ratio: 3.564690e-02	ci left: 5.374815e-01	ci right 5.570909e-01	k: 5473	n:10000
PABPC1L   10000 perm   2 sec   (6022 perm/sec)   p_kst 5.473000e-01   p_cons 4.774000e-01   p_joint 6.921000e-01

Outputting figure to mutsig2_images.part000000000125/PABPC1L.3_1901_10000_0.5473_0.4774_0.6921.png
                gene_name: PABPC1L
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 67 percent done.
PADI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.269431e-02	ci left: 5.799842e-01	ci right 5.993635e-01	k: 5897	n:10000
Cons ci ratio: 6.696667e-02	ci left: 2.465785e-01	ci right 2.637644e-01	k: 2551	n:10000
KS ci ratio: 2.014424e-02	ci left: 7.829981e-01	ci right 7.990320e-01	k: 7911	n:10000
PADI3   10000 perm   2 sec   (5628 perm/sec)   p_kst 7.911000e-01   p_cons 2.551000e-01   p_joint 5.897000e-01

Outputting figure to mutsig2_images.part000000000125/PADI3.3_2059_10000_0.7911_0.2551_0.5897.png
                gene_name: PADI3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 69 percent done.
PAFAH1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.150553e-01	ci left: 9.798552e-02	ci right 1.100463e-01	k: 1039	n:10000
Cons ci ratio: 2.508199e-02	ci left: 7.004918e-01	ci right 7.183861e-01	k: 7095	n:10000
KS ci ratio: 1.363864e-01	ci left: 7.107385e-02	ci right 8.157455e-02	k: 762	n:10000
PAFAH1B1   10000 perm   2 sec   (5985 perm/sec)   p_kst 7.620000e-02   p_cons 7.095000e-01   p_joint 1.039000e-01

Joint ci ratio: 8.251386e-02	ci left: 9.720062e-02	ci right 1.056157e-01	k: 2027	n:20000
Cons ci ratio: 1.781353e-02	ci left: 7.013418e-01	ci right 7.139978e-01	k: 14154	n:20000
KS ci ratio: 9.773037e-02	ci left: 7.080016e-02	ci right 7.812413e-02	k: 1488	n:20000
PAFAH1B1   20000 perm   4 sec   (5332 perm/sec)   p_kst 7.440000e-02   p_cons 7.077000e-01   p_joint 1.013500e-01

Outputting figure to mutsig2_images.part000000000125/PAFAH1B1.3_1273_20000_0.0744_0.7077_0.10135.png
                gene_name: PAFAH1B1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.11 

Current progress: 71 percent done.
PAK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.445056e-02	ci left: 7.109857e-01	ci right 7.286861e-01	k: 7199	n:10000
KS ci ratio: 3.958604e-03	ci left: 9.878505e-01	ci right 9.918564e-01	k: 9900	n:10000
PAK2   10000 perm   2 sec   (5901 perm/sec)   p_kst 9.900000e-01   p_cons 7.199000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000125/PAK2.3_1631_10000_0.99_0.7199_1.png
                gene_name: PAK2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
PANK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.872080e-01	ci left: 3.805695e-02	ci right 4.601263e-02	k: 419	n:10000
Cons ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
KS ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
PANK3   10000 perm   2 sec   (6483 perm/sec)   p_kst 8.370000e-02   p_cons 7.170000e-02   p_joint 4.190000e-02

Joint ci ratio: 1.129508e-01	ci left: 5.358313e-02	ci right 6.004647e-02	k: 1135	n:20000
Cons ci ratio: 1.005682e-01	ci left: 6.703871e-02	ci right 7.418673e-02	k: 1411	n:20000
KS ci ratio: 8.999049e-02	ci left: 8.273747e-02	ci right 9.058319e-02	k: 1732	n:20000
PANK3   20000 perm   4 sec   (5635 perm/sec)   p_kst 8.660000e-02   p_cons 7.055000e-02   p_joint 5.675000e-02

Joint ci ratio: 9.084778e-02	ci left: 5.577265e-02	ci right 6.111327e-02	k: 1752	n:30000
Cons ci ratio: 8.304610e-02	ci left: 6.625519e-02	ci right 7.202859e-02	k: 2073	n:30000
KS ci ratio: 7.373392e-02	ci left: 8.291652e-02	ci right 8.929724e-02	k: 2582	n:30000
PANK3   30000 perm   6 sec   (5343 perm/sec)   p_kst 8.606667e-02   p_cons 6.910000e-02   p_joint 5.840000e-02

Outputting figure to mutsig2_images.part000000000125/PANK3.3_1141_30000_0.086067_0.0691_0.0584.png
                gene_name: PANK3
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.061 

Current progress: 75 percent done.
OXNAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.627940e-01	ci left: 5.032338e-02	ci right 5.933816e-02	k: 547	n:10000
Cons ci ratio: 5.177092e-01	ci left: 4.232871e-03	ci right 7.265981e-03	k: 56	n:10000
KS ci ratio: 3.597900e-02	ci left: 5.328747e-01	ci right 5.525004e-01	k: 5427	n:10000
OXNAD1   10000 perm   2 sec   (5087 perm/sec)   p_kst 5.427000e-01   p_cons 5.600000e-03   p_joint 5.470000e-02

Joint ci ratio: 8.333946e-02	ci left: 9.543404e-02	ci right 1.037828e-01	k: 1991	n:20000
Cons ci ratio: 4.169427e-01	ci left: 3.485595e-03	ci right 5.362982e-03	k: 87	n:20000
KS ci ratio: 2.546576e-02	ci left: 5.353145e-01	ci right 5.491732e-01	k: 10845	n:20000
OXNAD1   20000 perm   4 sec   (5148 perm/sec)   p_kst 5.422500e-01   p_cons 4.350000e-03   p_joint 9.955000e-02

Joint ci ratio: 2.473828e-01	ci left: 7.273253e-03	ci right 9.356987e-03	k: 248	n:30000
Cons ci ratio: 3.632525e-01	ci left: 3.165816e-03	ci right 4.599568e-03	k: 115	n:30000
KS ci ratio: 2.077153e-02	ci left: 5.371089e-01	ci right 5.484162e-01	k: 16283	n:30000
OXNAD1   30000 perm   6 sec   (5105 perm/sec)   p_kst 5.427667e-01   p_cons 3.833333e-03   p_joint 8.266667e-03

Joint ci ratio: 2.192923e-01	ci left: 7.055794e-03	ci right 8.816768e-03	k: 316	n:40000
Cons ci ratio: 3.227175e-01	ci left: 3.082802e-03	ci right 4.291016e-03	k: 146	n:40000
KS ci ratio: 1.801577e-02	ci left: 5.371270e-01	ci right 5.469169e-01	k: 21681	n:40000
OXNAD1   40000 perm   8 sec   (5022 perm/sec)   p_kst 5.420250e-01   p_cons 3.650000e-03   p_joint 7.900000e-03

Joint ci ratio: 1.967052e-01	ci left: 7.104644e-03	ci right 8.673300e-03	k: 393	n:50000
Cons ci ratio: 2.932901e-01	ci left: 3.038414e-03	ci right 4.100509e-03	k: 177	n:50000
KS ci ratio: 1.612445e-02	ci left: 5.373203e-01	ci right 5.460748e-01	k: 27085	n:50000
OXNAD1   50000 perm   10 sec   (4934 perm/sec)   p_kst 5.417000e-01   p_cons 3.540000e-03   p_joint 7.860000e-03

Joint ci ratio: 1.763615e-01	ci left: 7.446130e-03	ci right 8.902045e-03	k: 489	n:60000
Cons ci ratio: 2.626038e-01	ci left: 3.214419e-03	ci right 4.201211e-03	k: 221	n:60000
KS ci ratio: 1.468210e-02	ci left: 5.389704e-01	ci right 5.469588e-01	k: 32578	n:60000
OXNAD1   60000 perm   13 sec   (4661 perm/sec)   p_kst 5.429667e-01   p_cons 3.683333e-03   p_joint 8.150000e-03

Joint ci ratio: 2.123875e-01	ci left: 4.328523e-03	ci right 5.370316e-03	k: 338	n:70000
Cons ci ratio: 2.464902e-01	ci left: 3.156457e-03	ci right 4.056892e-03	k: 251	n:70000
KS ci ratio: 1.357335e-02	ci left: 5.399870e-01	ci right 5.473808e-01	k: 38058	n:70000
OXNAD1   70000 perm   16 sec   (4395 perm/sec)   p_kst 5.436857e-01   p_cons 3.585714e-03   p_joint 4.828571e-03

Joint ci ratio: 1.967479e-01	ci left: 4.451673e-03	ci right 5.434757e-03	k: 394	n:80000
Cons ci ratio: 2.309734e-01	ci left: 3.173258e-03	ci right 4.013376e-03	k: 286	n:80000
KS ci ratio: 1.267847e-02	ci left: 5.409411e-01	ci right 5.478557e-01	k: 43552	n:80000
OXNAD1   80000 perm   18 sec   (4337 perm/sec)   p_kst 5.444000e-01   p_cons 3.575000e-03   p_joint 4.925000e-03

Joint ci ratio: 1.654307e-01	ci left: 5.686930e-03	ci right 6.723063e-03	k: 557	n:90000
Cons ci ratio: 2.204789e-01	ci left: 3.114190e-03	ci right 3.896128e-03	k: 314	n:90000
KS ci ratio: 1.194403e-02	ci left: 5.415285e-01	ci right 5.480464e-01	k: 49031	n:90000
OXNAD1   90000 perm   21 sec   (4280 perm/sec)   p_kst 5.447889e-01   p_cons 3.488889e-03   p_joint 6.188889e-03

Joint ci ratio: 1.367502e-01	ci left: 7.592392e-03	ci right 8.716417e-03	k: 814	n:100000
Cons ci ratio: 2.109873e-01	ci left: 3.077101e-03	ci right 3.812166e-03	k: 343	n:100000
KS ci ratio: 1.134938e-02	ci left: 5.408968e-01	ci right 5.470806e-01	k: 54399	n:100000
OXNAD1   100000 perm   24 sec   (4226 perm/sec)   p_kst 5.439900e-01   p_cons 3.430000e-03   p_joint 8.140000e-03

Joint ci ratio: 1.507540e-01	ci left: 5.648377e-03	ci right 6.577952e-03	k: 671	n:110000
Cons ci ratio: 2.012754e-01	ci left: 3.090509e-03	ci right 3.790620e-03	k: 377	n:110000
KS ci ratio: 1.081327e-02	ci left: 5.414058e-01	ci right 5.473010e-01	k: 59879	n:110000
OXNAD1   110000 perm   26 sec   (4172 perm/sec)   p_kst 5.443545e-01   p_cons 3.427273e-03   p_joint 6.100000e-03

Joint ci ratio: 1.439504e-01	ci left: 5.699392e-03	ci right 6.591394e-03	k: 736	n:120000
Cons ci ratio: 1.907129e-01	ci left: 3.173740e-03	ci right 3.850604e-03	k: 420	n:120000
KS ci ratio: 1.035042e-02	ci left: 5.416520e-01	ci right 5.472958e-01	k: 65337	n:120000
OXNAD1   120000 perm   29 sec   (4114 perm/sec)   p_kst 5.444750e-01   p_cons 3.500000e-03   p_joint 6.133333e-03

Joint ci ratio: 1.379054e-01	ci left: 5.750784e-03	ci right 6.609929e-03	k: 802	n:130000
Cons ci ratio: 1.840598e-01	ci left: 3.156881e-03	ci right 3.804041e-03	k: 451	n:130000
KS ci ratio: 9.936312e-03	ci left: 5.421651e-01	ci right 5.475868e-01	k: 70834	n:130000
OXNAD1   130000 perm   32 sec   (4049 perm/sec)   p_kst 5.448769e-01   p_cons 3.469231e-03   p_joint 6.169231e-03

Joint ci ratio: 1.337294e-01	ci left: 5.691911e-03	ci right 6.514461e-03	k: 853	n:140000
Cons ci ratio: 1.782428e-01	ci left: 3.135956e-03	ci right 3.756319e-03	k: 481	n:140000
KS ci ratio: 9.574155e-03	ci left: 5.423013e-01	ci right 5.475254e-01	k: 76288	n:140000
OXNAD1   140000 perm   35 sec   (3990 perm/sec)   p_kst 5.449143e-01   p_cons 3.435714e-03   p_joint 6.092857e-03

Joint ci ratio: 1.288412e-01	ci left: 5.738010e-03	ci right 6.534594e-03	k: 919	n:150000
Cons ci ratio: 1.722707e-01	ci left: 3.143619e-03	ci right 3.742495e-03	k: 515	n:150000
KS ci ratio: 9.251277e-03	ci left: 5.422957e-01	ci right 5.473426e-01	k: 81723	n:150000
OXNAD1   150000 perm   38 sec   (3924 perm/sec)   p_kst 5.448200e-01   p_cons 3.433333e-03   p_joint 6.126667e-03

Joint ci ratio: 1.241363e-01	ci left: 5.809109e-03	ci right 6.583948e-03	k: 990	n:160000
Cons ci ratio: 1.661054e-01	ci left: 3.180579e-03	ci right 3.762643e-03	k: 554	n:160000
KS ci ratio: 8.954716e-03	ci left: 5.425311e-01	ci right 5.474173e-01	k: 87196	n:160000
OXNAD1   160000 perm   41 sec   (3863 perm/sec)   p_kst 5.449750e-01   p_cons 3.462500e-03   p_joint 6.187500e-03

Joint ci ratio: 1.378339e-01	ci left: 4.408805e-03	ci right 5.067083e-03	k: 804	n:170000
Cons ci ratio: 1.608298e-01	ci left: 3.202233e-03	ci right 3.767849e-03	k: 591	n:170000
KS ci ratio: 8.680119e-03	ci left: 5.430175e-01	ci right 5.477574e-01	k: 92716	n:170000
OXNAD1   170000 perm   45 sec   (3807 perm/sec)   p_kst 5.453882e-01   p_cons 3.476471e-03   p_joint 4.729412e-03

Joint ci ratio: 1.335069e-01	ci left: 4.448329e-03	ci right 5.090003e-03	k: 857	n:180000
Cons ci ratio: 1.564016e-01	ci left: 3.205724e-03	ci right 3.754904e-03	k: 625	n:180000
KS ci ratio: 8.433851e-03	ci left: 5.431851e-01	ci right 5.477912e-01	k: 98188	n:180000
OXNAD1   180000 perm   49 sec   (3701 perm/sec)   p_kst 5.454889e-01   p_cons 3.472222e-03   p_joint 4.761111e-03

Joint ci ratio: 1.126608e-01	ci left: 5.974725e-03	ci right 6.693093e-03	k: 1202	n:190000
Cons ci ratio: 1.519739e-01	ci left: 3.224228e-03	ci right 3.759518e-03	k: 662	n:190000
KS ci ratio: 8.207856e-03	ci left: 5.433104e-01	ci right 5.477934e-01	k: 103655	n:190000
OXNAD1   190000 perm   52 sec   (3641 perm/sec)   p_kst 5.455526e-01   p_cons 3.484211e-03   p_joint 6.326316e-03

Joint ci ratio: 9.450075e-02	ci left: 8.126714e-03	ci right 8.937628e-03	k: 1705	n:200000
Cons ci ratio: 1.483281e-01	ci left: 3.221817e-03	ci right 3.742737e-03	k: 695	n:200000
KS ci ratio: 7.998057e-03	ci left: 5.434897e-01	ci right 5.478590e-01	k: 109135	n:200000
OXNAD1   200000 perm   56 sec   (3582 perm/sec)   p_kst 5.456750e-01   p_cons 3.475000e-03   p_joint 8.525000e-03

Joint ci ratio: 9.236122e-02	ci left: 8.111775e-03	ci right 8.901882e-03	k: 1785	n:210000
Cons ci ratio: 1.452328e-01	ci left: 3.206006e-03	ci right 3.712614e-03	k: 725	n:210000
KS ci ratio: 7.801466e-03	ci left: 5.437866e-01	ci right 5.480502e-01	k: 114643	n:210000
OXNAD1   210000 perm   60 sec   (3529 perm/sec)   p_kst 5.459190e-01   p_cons 3.452381e-03   p_joint 8.500000e-03

Joint ci ratio: 1.200543e-01	ci left: 4.533095e-03	ci right 5.116433e-03	k: 1060	n:220000
Cons ci ratio: 1.409274e-01	ci left: 3.257509e-03	ci right 3.755714e-03	k: 770	n:220000
KS ci ratio: 7.622183e-03	ci left: 5.438303e-01	ci right 5.479958e-01	k: 120101	n:220000
OXNAD1   220000 perm   63 sec   (3473 perm/sec)   p_kst 5.459136e-01   p_cons 3.500000e-03   p_joint 4.818182e-03

Joint ci ratio: 1.181794e-01	ci left: 4.479418e-03	ci right 5.046217e-03	k: 1094	n:230000
Cons ci ratio: 1.390508e-01	ci left: 3.203978e-03	ci right 3.686930e-03	k: 791	n:230000
KS ci ratio: 7.458380e-03	ci left: 5.436276e-01	ci right 5.477017e-01	k: 125503	n:230000
OXNAD1   230000 perm   67 sec   (3424 perm/sec)   p_kst 5.456652e-01   p_cons 3.439130e-03   p_joint 4.756522e-03

Joint ci ratio: 1.156712e-01	ci left: 4.486927e-03	ci right 5.041804e-03	k: 1142	n:240000
Cons ci ratio: 1.363248e-01	ci left: 3.199219e-03	ci right 3.671232e-03	k: 823	n:240000
KS ci ratio: 7.300282e-03	ci left: 5.437429e-01	ci right 5.477310e-01	k: 130977	n:240000
OXNAD1   240000 perm   71 sec   (3376 perm/sec)   p_kst 5.457375e-01   p_cons 3.429167e-03   p_joint 4.758333e-03

Joint ci ratio: 1.131256e-01	ci left: 4.509501e-03	ci right 5.054077e-03	k: 1194	n:250000
Cons ci ratio: 1.332076e-01	ci left: 3.221993e-03	ci right 3.685636e-03	k: 862	n:250000
KS ci ratio: 7.149867e-03	ci left: 5.439858e-01	ci right 5.478931e-01	k: 136485	n:250000
OXNAD1   250000 perm   75 sec   (3330 perm/sec)   p_kst 5.459400e-01   p_cons 3.448000e-03   p_joint 4.776000e-03

Joint ci ratio: 1.106073e-01	ci left: 4.541683e-03	ci right 5.077140e-03	k: 1249	n:260000
Cons ci ratio: 1.306588e-01	ci left: 3.224524e-03	ci right 3.678964e-03	k: 896	n:260000
KS ci ratio: 7.010664e-03	ci left: 5.440492e-01	ci right 5.478806e-01	k: 141951	n:260000
OXNAD1   260000 perm   79 sec   (3285 perm/sec)   p_kst 5.459654e-01   p_cons 3.446154e-03   p_joint 4.803846e-03

Joint ci ratio: 1.086692e-01	ci left: 4.535568e-03	ci right 5.060334e-03	k: 1294	n:270000
Cons ci ratio: 1.285979e-01	ci left: 3.209020e-03	ci right 3.653596e-03	k: 925	n:270000
KS ci ratio: 6.877129e-03	ci left: 5.442642e-01	ci right 5.480237e-01	k: 147459	n:270000
OXNAD1   270000 perm   83 sec   (3236 perm/sec)   p_kst 5.461444e-01   p_cons 3.425926e-03   p_joint 4.792593e-03

Joint ci ratio: 8.896750e-02	ci left: 6.579251e-03	ci right 7.195307e-03	k: 1927	n:280000
Cons ci ratio: 1.261026e-01	ci left: 3.222346e-03	ci right 3.659460e-03	k: 962	n:280000
KS ci ratio: 6.749240e-03	ci left: 5.445895e-01	ci right 5.482810e-01	k: 153002	n:280000
OXNAD1   280000 perm   88 sec   (3191 perm/sec)   p_kst 5.464357e-01   p_cons 3.435714e-03   p_joint 6.882143e-03

Joint ci ratio: 1.047011e-01	ci left: 4.558401e-03	ci right 5.065366e-03	k: 1394	n:290000
Cons ci ratio: 1.239963e-01	ci left: 3.221464e-03	ci right 3.650622e-03	k: 995	n:290000
KS ci ratio: 6.632194e-03	ci left: 5.445962e-01	ci right 5.482235e-01	k: 158459	n:290000
OXNAD1   290000 perm   93 sec   (3126 perm/sec)   p_kst 5.464103e-01   p_cons 3.431034e-03   p_joint 4.806897e-03

Joint ci ratio: 8.550829e-02	ci left: 6.659087e-03	ci right 7.257164e-03	k: 2086	n:300000
Cons ci ratio: 1.218140e-01	ci left: 3.230394e-03	ci right 3.652622e-03	k: 1031	n:300000
KS ci ratio: 6.520551e-03	ci left: 5.446398e-01	ci right 5.482060e-01	k: 163927	n:300000
OXNAD1   300000 perm   97 sec   (3087 perm/sec)   p_kst 5.464233e-01   p_cons 3.436667e-03   p_joint 6.953333e-03

Joint ci ratio: 7.598174e-02	ci left: 8.189319e-03	ci right 8.839274e-03	k: 2638	n:310000
Cons ci ratio: 1.203096e-01	ci left: 3.207516e-03	ci right 3.621208e-03	k: 1057	n:310000
KS ci ratio: 6.413235e-03	ci left: 5.447681e-01	ci right 5.482762e-01	k: 169422	n:310000
OXNAD1   310000 perm   102 sec   (3050 perm/sec)   p_kst 5.465226e-01   p_cons 3.409677e-03   p_joint 8.509677e-03

Joint ci ratio: 8.302120e-02	ci left: 6.631403e-03	ci right 7.208831e-03	k: 2213	n:320000
Cons ci ratio: 1.187496e-01	ci left: 3.192164e-03	ci right 3.598162e-03	k: 1085	n:320000
KS ci ratio: 6.312800e-03	ci left: 5.447513e-01	ci right 5.482041e-01	k: 174873	n:320000
OXNAD1   320000 perm   106 sec   (3014 perm/sec)   p_kst 5.464781e-01   p_cons 3.390625e-03   p_joint 6.915625e-03

Joint ci ratio: 9.850716e-02	ci left: 4.540425e-03	ci right 5.013791e-03	k: 1575	n:330000
Cons ci ratio: 1.168809e-01	ci left: 3.198367e-03	ci right 3.598311e-03	k: 1120	n:330000
KS ci ratio: 6.218955e-03	ci left: 5.445752e-01	ci right 5.479755e-01	k: 180271	n:330000
OXNAD1   330000 perm   111 sec   (2971 perm/sec)   p_kst 5.462758e-01   p_cons 3.393939e-03   p_joint 4.772727e-03

Joint ci ratio: 8.034274e-02	ci left: 6.673492e-03	ci right 7.234961e-03	k: 2363	n:340000
Cons ci ratio: 1.150978e-01	ci left: 3.204253e-03	ci right 3.598404e-03	k: 1155	n:340000
KS ci ratio: 6.126736e-03	ci left: 5.446071e-01	ci right 5.479569e-01	k: 185736	n:340000
OXNAD1   340000 perm   116 sec   (2927 perm/sec)   p_kst 5.462824e-01   p_cons 3.397059e-03   p_joint 6.950000e-03

Joint ci ratio: 7.932678e-02	ci left: 6.653624e-03	ci right 7.206015e-03	k: 2424	n:350000
Cons ci ratio: 1.139229e-01	ci left: 3.179308e-03	ci right 3.566130e-03	k: 1179	n:350000
KS ci ratio: 6.039511e-03	ci left: 5.445545e-01	ci right 5.478561e-01	k: 191172	n:350000
OXNAD1   350000 perm   121 sec   (2895 perm/sec)   p_kst 5.462057e-01   p_cons 3.368571e-03   p_joint 6.925714e-03

Joint ci ratio: 7.065525e-02	ci left: 8.178127e-03	ci right 8.779825e-03	k: 3051	n:360000
Cons ci ratio: 1.120849e-01	ci left: 3.196266e-03	ci right 3.578463e-03	k: 1218	n:360000
KS ci ratio: 5.955642e-03	ci left: 5.445275e-01	ci right 5.477829e-01	k: 196616	n:360000
OXNAD1   360000 perm   126 sec   (2861 perm/sec)   p_kst 5.461556e-01   p_cons 3.383333e-03   p_joint 8.475000e-03

Joint ci ratio: 6.962430e-02	ci left: 8.198731e-03	ci right 8.792789e-03	k: 3142	n:370000
Cons ci ratio: 1.104212e-01	ci left: 3.207099e-03	ci right 3.584528e-03	k: 1255	n:370000
KS ci ratio: 5.874659e-03	ci left: 5.445454e-01	ci right 5.477565e-01	k: 202076	n:370000
OXNAD1   370000 perm   131 sec   (2826 perm/sec)   p_kst 5.461514e-01   p_cons 3.391892e-03   p_joint 8.491892e-03

Joint ci ratio: 6.878753e-02	ci left: 8.182098e-03	ci right 8.767540e-03	k: 3219	n:380000
Cons ci ratio: 1.088294e-01	ci left: 3.217401e-03	ci right 3.590235e-03	k: 1292	n:380000
KS ci ratio: 5.798278e-03	ci left: 5.444443e-01	ci right 5.476129e-01	k: 207491	n:380000
OXNAD1   380000 perm   136 sec   (2791 perm/sec)   p_kst 5.460289e-01   p_cons 3.400000e-03   p_joint 8.471053e-03

Joint ci ratio: 7.513672e-02	ci left: 6.670266e-03	ci right 7.193510e-03	k: 2702	n:390000
Cons ci ratio: 1.072236e-01	ci left: 3.232203e-03	ci right 3.600877e-03	k: 1331	n:390000
KS ci ratio: 5.722194e-03	ci left: 5.445743e-01	ci right 5.477019e-01	k: 212994	n:390000
OXNAD1   390000 perm   141 sec   (2757 perm/sec)   p_kst 5.461385e-01   p_cons 3.412821e-03   p_joint 6.928205e-03

Joint ci ratio: 8.910648e-02	ci left: 4.600379e-03	ci right 5.031843e-03	k: 1925	n:400000
Cons ci ratio: 1.058420e-01	ci left: 3.236567e-03	ci right 3.600685e-03	k: 1366	n:400000
KS ci ratio: 5.647633e-03	ci left: 5.448206e-01	ci right 5.479087e-01	k: 218546	n:400000
OXNAD1   400000 perm   147 sec   (2724 perm/sec)   p_kst 5.463650e-01   p_cons 3.415000e-03   p_joint 4.812500e-03

Joint ci ratio: 7.332820e-02	ci left: 6.668044e-03	ci right 7.177986e-03	k: 2837	n:410000
Cons ci ratio: 1.046623e-01	ci left: 3.231245e-03	ci right 3.590464e-03	k: 1397	n:410000
KS ci ratio: 5.578325e-03	ci left: 5.448404e-01	ci right 5.478906e-01	k: 224010	n:410000
OXNAD1   410000 perm   152 sec   (2692 perm/sec)   p_kst 5.463659e-01   p_cons 3.407317e-03   p_joint 6.919512e-03

Joint ci ratio: 8.720418e-02	ci left: 4.579230e-03	ci right 4.999075e-03	k: 2010	n:420000
Cons ci ratio: 1.036669e-01	ci left: 3.216920e-03	ci right 3.570938e-03	k: 1424	n:420000
KS ci ratio: 5.511111e-03	ci left: 5.448953e-01	ci right 5.479089e-01	k: 229489	n:420000
OXNAD1   420000 perm   158 sec   (2659 perm/sec)   p_kst 5.464024e-01   p_cons 3.390476e-03   p_joint 4.785714e-03

Joint ci ratio: 8.628705e-02	ci left: 4.570566e-03	ci right 4.984987e-03	k: 2053	n:430000
Cons ci ratio: 1.026639e-01	ci left: 3.205543e-03	ci right 3.554690e-03	k: 1452	n:430000
KS ci ratio: 5.447879e-03	ci left: 5.448012e-01	ci right 5.477796e-01	k: 234905	n:430000
OXNAD1   430000 perm   164 sec   (2624 perm/sec)   p_kst 5.462907e-01   p_cons 3.376744e-03   p_joint 4.774419e-03

Joint ci ratio: 8.550073e-02	ci left: 4.551197e-03	ci right 4.959913e-03	k: 2091	n:440000
Cons ci ratio: 1.016895e-01	ci left: 3.194699e-03	ci right 3.539165e-03	k: 1480	n:440000
KS ci ratio: 5.386280e-03	ci left: 5.447571e-01	ci right 5.477014e-01	k: 240341	n:440000
OXNAD1   440000 perm   169 sec   (2596 perm/sec)   p_kst 5.462295e-01   p_cons 3.363636e-03   p_joint 4.752273e-03

Joint ci ratio: 8.461586e-02	ci left: 4.545756e-03	ci right 4.949550e-03	k: 2135	n:450000
Cons ci ratio: 1.006753e-01	ci left: 3.188685e-03	ci right 3.528870e-03	k: 1510	n:450000
KS ci ratio: 5.326486e-03	ci left: 5.447373e-01	ci right 5.476488e-01	k: 245787	n:450000
OXNAD1   450000 perm   175 sec   (2565 perm/sec)   p_kst 5.461933e-01   p_cons 3.355556e-03   p_joint 4.744444e-03

Joint ci ratio: 8.356555e-02	ci left: 4.561860e-03	ci right 4.961809e-03	k: 2189	n:460000
Cons ci ratio: 9.943229e-02	ci left: 3.199908e-03	ci right 3.536830e-03	k: 1548	n:460000
KS ci ratio: 5.268178e-03	ci left: 5.447621e-01	ci right 5.476417e-01	k: 251253	n:460000
OXNAD1   460000 perm   182 sec   (2533 perm/sec)   p_kst 5.462022e-01   p_cons 3.365217e-03   p_joint 4.758696e-03

Outputting figure to mutsig2_images.part000000000125/OXNAD1.2_967_460000_0.5462_0.0033652_0.0047587.png
                gene_name: OXNAD1
               theta_stop: 0.099 
                    nperm: 460000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.0034 
      ci_cons_bounds_left: 0.0032 
     ci_cons_bounds_right: 0.0035 
                  p_joint: 0.0048 
     ci_joint_bounds_left: 0.0046 
    ci_joint_bounds_right: 0.0050 

Current progress: 76 percent done.
P2RX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.162892e-02	ci left: 1.475656e-01	ci right 1.618362e-01	k: 1546	n:10000
Cons ci ratio: 5.018909e-02	ci left: 3.692789e-01	ci right 3.883917e-01	k: 3788	n:10000
KS ci ratio: 1.443225e-01	ci left: 6.372193e-02	ci right 7.373108e-02	k: 686	n:10000
P2RX2   10000 perm   2 sec   (6281 perm/sec)   p_kst 6.860000e-02   p_cons 3.788000e-01   p_joint 1.546000e-01

Joint ci ratio: 4.008366e-02	ci left: 3.169679e-01	ci right 3.299835e-01	k: 6469	n:20000
Cons ci ratio: 3.435858e-02	ci left: 3.874182e-01	ci right 4.010126e-01	k: 7884	n:20000
KS ci ratio: 1.015387e-01	ci left: 6.581811e-02	ci right 7.290771e-02	k: 1386	n:20000
P2RX2   20000 perm   4 sec   (5533 perm/sec)   p_kst 6.930000e-02   p_cons 3.942000e-01   p_joint 3.234500e-01

Joint ci ratio: 4.278917e-02	ci left: 2.139009e-01	ci right 2.232870e-01	k: 6557	n:30000
Cons ci ratio: 2.820985e-02	ci left: 3.860374e-01	ci right 3.971169e-01	k: 11747	n:30000
KS ci ratio: 8.147446e-02	ci left: 6.870741e-02	ci right 7.457587e-02	k: 2148	n:30000
P2RX2   30000 perm   6 sec   (5285 perm/sec)   p_kst 7.160000e-02   p_cons 3.915667e-01   p_joint 2.185667e-01

Outputting figure to mutsig2_images.part000000000125/P2RX2.2_1534_30000_0.0716_0.39157_0.21857.png
                gene_name: P2RX2
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 78 percent done.
P2RX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.682941e-02	ci left: 1.618987e-01	ci right 1.766945e-01	k: 1692	n:10000
Cons ci ratio: 1.253329e-01	ci left: 8.348941e-02	ci right 9.475129e-02	k: 890	n:10000
KS ci ratio: 9.262256e-02	ci left: 1.448193e-01	ci right 1.589842e-01	k: 1518	n:10000
P2RX3   10000 perm   2 sec   (6261 perm/sec)   p_kst 1.518000e-01   p_cons 8.900000e-02   p_joint 1.692000e-01

Joint ci ratio: 5.852753e-02	ci left: 1.778108e-01	ci right 1.885815e-01	k: 3663	n:20000
Cons ci ratio: 8.805710e-02	ci left: 8.616660e-02	ci right 9.415302e-02	k: 1802	n:20000
KS ci ratio: 6.509137e-02	ci left: 1.484806e-01	ci right 1.585204e-01	k: 3069	n:20000
P2RX3   20000 perm   4 sec   (5645 perm/sec)   p_kst 1.534500e-01   p_cons 9.010000e-02   p_joint 1.831500e-01

Outputting figure to mutsig2_images.part000000000125/P2RX3.2_1242_20000_0.15345_0.0901_0.18315.png
                gene_name: P2RX3
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 80 percent done.
P2RY13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.568707e-02	ci left: 2.034324e-01	ci right 2.195360e-01	k: 2114	n:10000
Cons ci ratio: 5.402496e-02	ci left: 3.354805e-01	ci right 3.542099e-01	k: 3448	n:10000
KS ci ratio: 2.248291e-01	ci left: 2.617677e-02	ci right 3.290101e-02	k: 294	n:10000
P2RY13   10000 perm   1 sec   (7094 perm/sec)   p_kst 2.940000e-02   p_cons 3.448000e-01   p_joint 2.114000e-01

Joint ci ratio: 5.626410e-02	ci left: 1.897760e-01	ci right 2.008128e-01	k: 3905	n:20000
Cons ci ratio: 3.880065e-02	ci left: 3.312939e-01	ci right 3.444532e-01	k: 6757	n:20000
KS ci ratio: 1.523258e-01	ci left: 2.960404e-02	ci right 3.453324e-02	k: 640	n:20000
P2RY13   20000 perm   3 sec   (6064 perm/sec)   p_kst 3.200000e-02   p_cons 3.378500e-01   p_joint 1.952500e-01

Joint ci ratio: 4.616497e-02	ci left: 1.892742e-01	ci right 1.982518e-01	k: 5812	n:30000
Cons ci ratio: 3.064910e-02	ci left: 3.474238e-01	ci right 3.582713e-01	k: 10585	n:30000
KS ci ratio: 1.242743e-01	ci left: 3.010182e-02	ci right 3.412279e-02	k: 962	n:30000
P2RY13   30000 perm   5 sec   (5674 perm/sec)   p_kst 3.206667e-02   p_cons 3.528333e-01   p_joint 1.937333e-01

Joint ci ratio: 3.815612e-02	ci left: 2.047760e-01	ci right 2.127664e-01	k: 8350	n:40000
Cons ci ratio: 2.656421e-02	ci left: 3.477916e-01	ci right 3.571799e-01	k: 14099	n:40000
KS ci ratio: 1.078858e-01	ci left: 3.022373e-02	ci right 3.369465e-02	k: 1277	n:40000
P2RY13   40000 perm   7 sec   (5452 perm/sec)   p_kst 3.192500e-02   p_cons 3.524750e-01   p_joint 2.087500e-01

Joint ci ratio: 3.578302e-02	ci left: 1.900850e-01	ci right 1.970306e-01	k: 9677	n:50000
Cons ci ratio: 2.369431e-02	ci left: 3.495477e-01	ci right 3.579493e-01	k: 17687	n:50000
KS ci ratio: 9.552763e-02	ci left: 3.102152e-02	ci right 3.415306e-02	k: 1628	n:50000
P2RY13   50000 perm   9 sec   (5284 perm/sec)   p_kst 3.256000e-02   p_cons 3.537400e-01   p_joint 1.935400e-01

Outputting figure to mutsig2_images.part000000000125/P2RY13.2_1073_50000_0.03256_0.35374_0.19354.png
                gene_name: P2RY13
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 82 percent done.
P4HA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.089156e-02	ci left: 7.705345e-01	ci right 7.869028e-01	k: 7788	n:10000
Cons ci ratio: 4.950306e-02	ci left: 3.757461e-01	ci right 3.949208e-01	k: 3853	n:10000
KS ci ratio: 2.248696e-02	ci left: 7.438177e-01	ci right 7.608351e-01	k: 7524	n:10000
P4HA2   10000 perm   2 sec   (5972 perm/sec)   p_kst 7.524000e-01   p_cons 3.853000e-01   p_joint 7.788000e-01

Outputting figure to mutsig2_images.part000000000125/P4HA2.2_1728_10000_0.7524_0.3853_0.7788.png
                gene_name: P4HA2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 84 percent done.
P4HA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.101545e-02	ci left: 4.674681e-01	ci right 4.871451e-01	k: 4773	n:10000
Cons ci ratio: 5.853744e-02	ci left: 3.004459e-01	ci right 3.186652e-01	k: 3095	n:10000
KS ci ratio: 1.902339e-02	ci left: 8.015621e-01	ci right 8.170573e-01	k: 8094	n:10000
P4HA3   10000 perm   2 sec   (6058 perm/sec)   p_kst 8.094000e-01   p_cons 3.095000e-01   p_joint 4.773000e-01

Outputting figure to mutsig2_images.part000000000125/P4HA3.2_1687_10000_0.8094_0.3095_0.4773.png
                gene_name: P4HA3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 86 percent done.
P4HB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.540739e-03	ci left: 9.696322e-01	ci right 9.760884e-01	k: 9730	n:10000
Cons ci ratio: 7.258412e-02	ci left: 2.175373e-01	ci right 2.340227e-01	k: 2257	n:10000
KS ci ratio: 8.767228e-02	ci left: 1.592465e-01	ci right 1.739483e-01	k: 1665	n:10000
P4HB   10000 perm   2 sec   (6119 perm/sec)   p_kst 1.665000e-01   p_cons 2.257000e-01   p_joint 9.730000e-01

Outputting figure to mutsig2_images.part000000000125/P4HB.2_1571_10000_0.1665_0.2257_0.973.png
                gene_name: P4HB
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 88 percent done.
PACSIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.672870e-02	ci left: 6.733749e-01	ci right 6.917187e-01	k: 6826	n:10000
Cons ci ratio: 1.920806e-02	ci left: 7.985170e-01	ci right 8.141041e-01	k: 8064	n:10000
KS ci ratio: 3.506102e-02	ci left: 5.456958e-01	ci right 5.652719e-01	k: 5555	n:10000
PACSIN1   10000 perm   2 sec   (6317 perm/sec)   p_kst 5.555000e-01   p_cons 8.064000e-01   p_joint 6.826000e-01

Outputting figure to mutsig2_images.part000000000125/PACSIN1.2_1371_10000_0.5555_0.8064_0.6826.png
                gene_name: PACSIN1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 90 percent done.
PAFAH1B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.995015e-02	ci left: 1.859943e-01	ci right 2.015845e-01	k: 1937	n:10000
Cons ci ratio: 1.106525e-01	ci left: 1.052972e-01	ci right 1.177301e-01	k: 1114	n:10000
KS ci ratio: 9.541650e-02	ci left: 1.374671e-01	ci right 1.513407e-01	k: 1443	n:10000
PAFAH1B3   10000 perm   1 sec   (7186 perm/sec)   p_kst 1.443000e-01   p_cons 1.114000e-01   p_joint 1.937000e-01

Joint ci ratio: 5.659743e-02	ci left: 1.879460e-01	ci right 1.989432e-01	k: 3868	n:20000
Cons ci ratio: 7.844266e-02	ci left: 1.066291e-01	ci right 1.153844e-01	k: 2219	n:20000
KS ci ratio: 6.722610e-02	ci left: 1.403936e-01	ci right 1.502098e-01	k: 2905	n:20000
PAFAH1B3   20000 perm   3 sec   (6216 perm/sec)   p_kst 1.452500e-01   p_cons 1.109500e-01   p_joint 1.934000e-01

Outputting figure to mutsig2_images.part000000000125/PAFAH1B3.2_716_20000_0.14525_0.11095_0.1934.png
                gene_name: PAFAH1B3
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 92 percent done.
PAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.842809e-02	ci left: 3.012392e-01	ci right 3.194714e-01	k: 3103	n:10000
Cons ci ratio: 1.872701e-02	ci left: 8.064357e-01	ci right 8.217809e-01	k: 8142	n:10000
KS ci ratio: 8.149215e-02	ci left: 1.801871e-01	ci right 1.955952e-01	k: 1878	n:10000
PAG1   10000 perm   1 sec   (6792 perm/sec)   p_kst 1.878000e-01   p_cons 8.142000e-01   p_joint 3.103000e-01

Outputting figure to mutsig2_images.part000000000125/PAG1.2_1323_10000_0.1878_0.8142_0.3103.png
                gene_name: PAG1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 94 percent done.
PAGE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.994959e-02	ci left: 1.523737e-01	ci right 1.668252e-01	k: 1595	n:10000
Cons ci ratio: 2.428074e-01	ci left: 2.231105e-02	ci right 2.856957e-02	k: 253	n:10000
KS ci ratio: 1.621032e-02	ci left: 8.469262e-01	ci right 8.608669e-01	k: 8540	n:10000
PAGE2   10000 perm   1 sec   (7628 perm/sec)   p_kst 8.540000e-01   p_cons 2.530000e-02   p_joint 1.595000e-01

Joint ci ratio: 6.162877e-02	ci left: 1.630396e-01	ci right 1.734570e-01	k: 3364	n:20000
Cons ci ratio: 1.720426e-01	ci left: 2.311997e-02	ci right 2.751951e-02	k: 505	n:20000
KS ci ratio: 1.161974e-02	ci left: 8.455329e-01	ci right 8.554650e-01	k: 17011	n:20000
PAGE2   20000 perm   3 sec   (6570 perm/sec)   p_kst 8.505500e-01   p_cons 2.525000e-02   p_joint 1.682000e-01

Joint ci ratio: 4.856844e-02	ci left: 1.740493e-01	ci right 1.827464e-01	k: 5351	n:30000
Cons ci ratio: 1.422130e-01	ci left: 2.294098e-02	ci right 2.648522e-02	k: 740	n:30000
KS ci ratio: 9.500334e-03	ci left: 8.461111e-01	ci right 8.542210e-01	k: 25506	n:30000
PAGE2   30000 perm   5 sec   (6056 perm/sec)   p_kst 8.502000e-01   p_cons 2.466667e-02   p_joint 1.783667e-01

Joint ci ratio: 3.777342e-02	ci left: 2.081024e-01	ci right 2.161394e-01	k: 8484	n:40000
Cons ci ratio: 1.236102e-01	ci left: 2.300709e-02	ci right 2.606247e-02	k: 980	n:40000
KS ci ratio: 8.234710e-03	ci left: 8.464376e-01	ci right 8.534615e-01	k: 33999	n:40000
PAGE2   40000 perm   7 sec   (5749 perm/sec)   p_kst 8.499750e-01   p_cons 2.450000e-02   p_joint 2.121000e-01

Joint ci ratio: 2.692345e-02	ci left: 2.937139e-01	ci right 3.017496e-01	k: 14886	n:50000
Cons ci ratio: 1.108040e-01	ci left: 2.306530e-02	ci right 2.579030e-02	k: 1220	n:50000
KS ci ratio: 7.359382e-03	ci left: 8.470214e-01	ci right 8.532979e-01	k: 42509	n:50000
PAGE2   50000 perm   9 sec   (5545 perm/sec)   p_kst 8.501800e-01   p_cons 2.440000e-02   p_joint 2.977200e-01

Joint ci ratio: 3.083808e-02	ci left: 2.088844e-01	ci right 2.154435e-01	k: 12729	n:60000
Cons ci ratio: 1.005606e-01	ci left: 2.345653e-02	ci right 2.595640e-02	k: 1481	n:60000
KS ci ratio: 6.705740e-03	ci left: 8.477727e-01	ci right 8.534933e-01	k: 51039	n:60000
PAGE2   60000 perm   11 sec   (5342 perm/sec)   p_kst 8.506500e-01   p_cons 2.468333e-02   p_joint 2.121500e-01

Joint ci ratio: 2.865054e-02	ci left: 2.079681e-01	ci right 2.140273e-01	k: 14769	n:70000
Cons ci ratio: 9.346197e-02	ci left: 2.336736e-02	ci right 2.567228e-02	k: 1715	n:70000
KS ci ratio: 6.204974e-03	ci left: 8.481246e-01	ci right 8.534177e-01	k: 59555	n:70000
PAGE2   70000 perm   13 sec   (5203 perm/sec)   p_kst 8.507857e-01   p_cons 2.450000e-02   p_joint 2.109857e-01

Outputting figure to mutsig2_images.part000000000125/PAGE2.2_352_70000_0.85079_0.0245_0.21099.png
                gene_name: PAGE2
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.21 

Current progress: 96 percent done.
PANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.863384e-02	ci left: 4.973503e-01	ci right 5.170455e-01	k: 5072	n:10000
Cons ci ratio: 1.118988e-01	ci left: 1.031515e-01	ci right 1.154771e-01	k: 1092	n:10000
KS ci ratio: 6.417870e-02	ci left: 2.628999e-01	ci right 2.804333e-01	k: 2716	n:10000
PANK1   10000 perm   2 sec   (6174 perm/sec)   p_kst 2.716000e-01   p_cons 1.092000e-01   p_joint 5.072000e-01

Joint ci ratio: 1.571517e-02	ci left: 7.507418e-01	ci right 7.626835e-01	k: 15135	n:20000
Cons ci ratio: 8.120554e-02	ci left: 1.000967e-01	ci right 1.086187e-01	k: 2086	n:20000
KS ci ratio: 4.582126e-02	ci left: 2.617218e-01	ci right 2.740458e-01	k: 5357	n:20000
PANK1   20000 perm   4 sec   (5385 perm/sec)   p_kst 2.678500e-01   p_cons 1.043000e-01   p_joint 7.567500e-01

Outputting figure to mutsig2_images.part000000000125/PANK1.2_1857_20000_0.26785_0.1043_0.75675.png
                gene_name: PANK1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 98 percent done.
PANX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.239472e-02	ci left: 2.740864e-01	ci right 2.918402e-01	k: 2829	n:10000
Cons ci ratio: 9.683164e-02	ci left: 1.339403e-01	ci right 1.476696e-01	k: 1407	n:10000
KS ci ratio: 7.002437e-02	ci left: 2.301744e-01	ci right 2.469782e-01	k: 2385	n:10000
PANX1   10000 perm   2 sec   (6265 perm/sec)   p_kst 2.385000e-01   p_cons 1.407000e-01   p_joint 2.829000e-01

Outputting figure to mutsig2_images.part000000000125/PANX1.2_1301_10000_0.2385_0.1407_0.2829.png
                gene_name: PANX1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000125
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 125 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1725>
Subject: Job 9894070: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1725>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000126> was used as the working directory.
Started at Sat Oct  6 00:23:01 2012
Results reported at Sat Oct  6 03:14:59 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000126.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000126.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 126  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000126.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  10284.67 sec.
    Max Memory :      6483 MB
    Max Swap   :      8887 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
126
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 126
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 126: processing genes 11270 - 11359
Calculating significance of each gene.
Using projection method.
11270	PANX2	8.528734e-01
11271	PANX3	5.898510e-01
11272	PAOX	8.078053e-01
11273	PAPD4	1.738916e-02
11274	PAPD5	8.021568e-01
11275	PAPD7	7.231986e-01
11276	PAPL	1.311714e-01
11277	PAPLN	9.880977e-01
11278	PAPOLA	6.713835e-01
11279	PAPOLB	5.766357e-01
11280	PAPOLG	2.984760e-01
11281	PAPPA	2.291667e-03
11282	PAPPA2	7.542886e-02
11283	PAPSS1	8.586078e-01
11284	PAPSS2	7.708292e-01
11285	PAQR3	5.535318e-01
11286	PAQR4	7.053913e-01
11287	PAQR5	1
11288	PAQR6	1
11289	PAQR7	5.815597e-01
11290	PAQR8	8.178385e-01
11291	PAQR9	1.411806e-01
11292	PARD3	7.620847e-01
11293	PARD3B	9.098917e-01
11294	PARD6A	7.546353e-01
11295	PARD6B	1
11296	PARD6G	4.591917e-01
11297	PARK2	3.622878e-02
11298	PARK7	5.100940e-01
11299	PARL	5.545358e-01
11300	PARM1	1
11301	PARN	6.866419e-01
11302	PARP1	7.842228e-01
11303	PARP10	8.380733e-01
11304	PARP11	5.132129e-02
11305	PARP12	3.039537e-01
11306	PARP14	6.510853e-01
11307	PARP15	9.980353e-02
11308	PARP16	6.877012e-01
11309	PARP2	7.964292e-01
In gene PARP3 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 1642    n = 1	mu =   8.55e-07
11310	PARP3	7.904704e-01
11311	PARP4	6.357014e-01
11312	PARP6	8.850938e-01
11313	PARP8	2.069712e-01
11314	PARP9	2.426733e-01
11315	PARS2	1
11316	PARVA	7.368786e-01
11317	PARVB	5.421990e-02
11318	PARVG	3.642449e-01
11319	PASD1	6.790762e-01
11320	PASK	7.536871e-01
11321	PATE1	1
11322	PATE2	3.952846e-02
11323	PATL1	7.672067e-01
11324	PATZ1	9.091636e-01
11325	PAWR	5.767632e-01
11326	PAX1	8.475720e-01
11327	PAX2	6.801151e-01
11328	PAX3	4.070668e-02
11329	PAX4	8.660935e-02
11330	PAX5	1
11331	PAX6	2.905839e-01
11332	PAX7	7.130872e-01
11333	PAX8	1
11334	PAX9	7.537189e-01
11335	PAXIP1	4.554577e-01
11336	PBK	6.450213e-01
11337	PBLD	5.458236e-01
11338	PBOV1	1
11339	PBRM1	8.776640e-01
11340	PBX1	7.635307e-01
11341	PBX2	1
11342	PBX3	5.949866e-01
11343	PBX4	1
11344	PBXIP1	3.287397e-01
11345	PC	7.129563e-01
11346	PCBD1	1
11347	PCBD2	1
11348	PCBP1	8.705414e-04
11349	PCBP2	6.555292e-01
11350	PCBP3	1
11351	PCBP4	1
11352	PCCA	1.090370e-02
11353	PCCB	1.060810e-01
11354	PCDH1	8.721499e-01
11355	PCDH10	3.384113e-04
11356	PCDH11X	1.037003e-04
11357	PCDH11Y	3.488361e-01
11358	PCDH12	5.061250e-01
11359	PCDH15	1.007231e-03
Done

Running MutSig 2:
Scatter job 126: processing genes 11270 - 11359
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PCDH15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.352037e-02	ci left: 2.669579e-01	ci right 2.845729e-01	k: 2757	n:10000
Cons ci ratio: 5.091734e-03	ci left: 9.808076e-01	ci right 9.859052e-01	k: 9835	n:10000
KS ci ratio: 1.262686e-01	ci left: 8.232386e-02	ci right 9.351756e-02	k: 878	n:10000
PCDH15   10000 perm   3 sec   (3435 perm/sec)   p_kst 8.780000e-02   p_cons 9.835000e-01   p_joint 2.757000e-01

Joint ci ratio: 5.552325e-02	ci left: 1.939311e-01	ci right 2.050564e-01	k: 3989	n:20000
Cons ci ratio: 3.639263e-03	ci left: 9.812167e-01	ci right 9.848409e-01	k: 19662	n:20000
KS ci ratio: 8.873490e-02	ci left: 8.494170e-02	ci right 9.287829e-02	k: 1777	n:20000
PCDH15   20000 perm   9 sec   (2144 perm/sec)   p_kst 8.885000e-02   p_cons 9.831000e-01   p_joint 1.994500e-01

Outputting figure to mutsig2_images.part000000000126/PCDH15.31_7659_20000_0.08885_0.9831_0.19945.png
                gene_name: PCDH15
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 2 percent done.
PCDH11X
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.371833e-02	ci left: 7.232022e-01	ci right 7.406625e-01	k: 7320	n:10000
KS ci ratio: 1.724980e-02	ci left: 8.304267e-01	ci right 8.449760e-01	k: 8378	n:10000
PCDH11X   10000 perm   3 sec   (3800 perm/sec)   p_kst 8.378000e-01   p_cons 7.320000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PCDH11X.22_4194_10000_0.8378_0.732_1.png
                gene_name: PCDH11X
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
PCDH10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.112090e-02	ci left: 2.246444e-01	ci right 2.413115e-01	k: 2329	n:10000
Cons ci ratio: 1.346742e-01	ci left: 7.281740e-02	ci right 8.342992e-02	k: 780	n:10000
KS ci ratio: 3.083585e-02	ci left: 6.080924e-01	ci right 6.272390e-01	k: 6177	n:10000
PCDH10   10000 perm   2 sec   (4895 perm/sec)   p_kst 6.177000e-01   p_cons 7.800000e-02   p_joint 2.329000e-01

Joint ci ratio: 5.416147e-02	ci left: 2.018978e-01	ci right 2.131874e-01	k: 4150	n:20000
Cons ci ratio: 8.687077e-02	ci left: 8.837200e-02	ci right 9.644695e-02	k: 1847	n:20000
KS ci ratio: 2.252263e-02	ci left: 5.954776e-01	ci right 6.090926e-01	k: 12046	n:20000
PCDH10   20000 perm   5 sec   (4286 perm/sec)   p_kst 6.023000e-01   p_cons 9.235000e-02   p_joint 2.075000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH10.20_3203_20000_0.6023_0.09235_0.2075.png
                gene_name: PCDH10
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 5 percent done.
PAPPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.385065e-01	ci left: 2.315796e-02	ci right 2.952203e-02	k: 262	n:10000
Cons ci ratio: 4.282578e-02	ci left: 4.460026e-01	ci right 4.656231e-01	k: 4558	n:10000
KS ci ratio: 3.512569e-01	ci left: 1.014137e-02	ci right 1.454954e-02	k: 122	n:10000
PAPPA   10000 perm   2 sec   (4908 perm/sec)   p_kst 1.220000e-02   p_cons 4.558000e-01   p_joint 2.620000e-02

Joint ci ratio: 2.160014e-01	ci left: 1.444865e-02	ci right 1.799402e-02	k: 323	n:20000
Cons ci ratio: 3.090899e-02	ci left: 4.387948e-01	ci right 4.526210e-01	k: 8914	n:20000
KS ci ratio: 2.509773e-01	ci left: 1.053722e-02	ci right 1.360709e-02	k: 240	n:20000
PAPPA   20000 perm   5 sec   (4438 perm/sec)   p_kst 1.200000e-02   p_cons 4.457000e-01   p_joint 1.615000e-02

Joint ci ratio: 1.593736e-01	ci left: 1.818947e-02	ci right 2.137116e-02	k: 592	n:30000
Cons ci ratio: 2.566092e-02	ci left: 4.318761e-01	ci right 4.431360e-01	k: 13125	n:30000
KS ci ratio: 2.062269e-01	ci left: 1.067210e-02	ci right 1.315710e-02	k: 356	n:30000
PAPPA   30000 perm   7 sec   (4260 perm/sec)   p_kst 1.186667e-02   p_cons 4.375000e-01   p_joint 1.973333e-02

Joint ci ratio: 1.412136e-01	ci left: 1.756392e-02	ci right 2.025657e-02	k: 755	n:40000
Cons ci ratio: 2.152491e-02	ci left: 4.483876e-01	ci right 4.581692e-01	k: 18131	n:40000
KS ci ratio: 1.789794e-01	ci left: 1.078871e-02	ci right 1.293303e-02	k: 473	n:40000
PAPPA   40000 perm   10 sec   (4141 perm/sec)   p_kst 1.182500e-02   p_cons 4.532750e-01   p_joint 1.887500e-02

Joint ci ratio: 1.240500e-01	ci left: 1.836412e-02	ci right 2.081210e-02	k: 978	n:50000
Cons ci ratio: 1.921209e-02	ci left: 4.499485e-01	ci right 4.586968e-01	k: 22716	n:50000
KS ci ratio: 1.596080e-01	ci left: 1.096795e-02	ci right 1.288934e-02	k: 595	n:50000
PAPPA   50000 perm   12 sec   (4034 perm/sec)   p_kst 1.190000e-02   p_cons 4.543200e-01   p_joint 1.956000e-02

Joint ci ratio: 1.189902e-01	ci left: 1.670851e-02	ci right 1.883850e-02	k: 1065	n:60000
Cons ci ratio: 1.754191e-02	ci left: 4.502267e-01	ci right 4.582111e-01	k: 27253	n:60000
KS ci ratio: 1.453116e-01	ci left: 1.111195e-02	ci right 1.286906e-02	k: 718	n:60000
PAPPA   60000 perm   15 sec   (3954 perm/sec)   p_kst 1.196667e-02   p_cons 4.542167e-01   p_joint 1.775000e-02

Joint ci ratio: 1.076640e-01	ci left: 1.758416e-02	ci right 1.959888e-02	k: 1300	n:70000
Cons ci ratio: 1.624501e-02	ci left: 4.503922e-01	ci right 4.577830e-01	k: 31786	n:70000
KS ci ratio: 1.326902e-01	ci left: 1.149661e-02	ci right 1.314419e-02	k: 861	n:70000
PAPPA   70000 perm   18 sec   (3875 perm/sec)   p_kst 1.230000e-02   p_cons 4.540857e-01   p_joint 1.857143e-02

Joint ci ratio: 1.044542e-01	ci left: 1.639559e-02	ci right 1.821466e-02	k: 1383	n:80000
Cons ci ratio: 1.517896e-02	ci left: 4.511825e-01	ci right 4.580958e-01	k: 36371	n:80000
KS ci ratio: 1.243855e-01	ci left: 1.149923e-02	ci right 1.303644e-02	k: 980	n:80000
PAPPA   80000 perm   21 sec   (3807 perm/sec)   p_kst 1.225000e-02   p_cons 4.546375e-01   p_joint 1.728750e-02

Joint ci ratio: 9.841612e-02	ci left: 1.646903e-02	ci right 1.818451e-02	k: 1558	n:90000
Cons ci ratio: 1.432930e-02	ci left: 4.507432e-01	ci right 4.572597e-01	k: 40860	n:90000
KS ci ratio: 1.174133e-01	ci left: 1.151457e-02	ci right 1.296156e-02	k: 1100	n:90000
PAPPA   90000 perm   24 sec   (3748 perm/sec)   p_kst 1.222222e-02   p_cons 4.540000e-01   p_joint 1.731111e-02

Joint ci ratio: 8.838695e-02	ci left: 1.843670e-02	ci right 2.015134e-02	k: 1928	n:100000
Cons ci ratio: 1.359948e-02	ci left: 4.507107e-01	ci right 4.568920e-01	k: 45380	n:100000
KS ci ratio: 1.104924e-01	ci left: 1.174274e-02	ci right 1.312575e-02	k: 1242	n:100000
PAPPA   100000 perm   27 sec   (3694 perm/sec)   p_kst 1.242000e-02   p_cons 4.538000e-01   p_joint 1.928000e-02

Joint ci ratio: 8.127616e-02	ci left: 1.986672e-02	ci right 2.155868e-02	k: 2277	n:110000
Cons ci ratio: 1.296234e-02	ci left: 4.510181e-01	ci right 4.569116e-01	k: 49936	n:110000
KS ci ratio: 1.045138e-01	ci left: 1.196689e-02	ci right 1.329535e-02	k: 1388	n:110000
PAPPA   110000 perm   30 sec   (3640 perm/sec)   p_kst 1.261818e-02   p_cons 4.539636e-01   p_joint 2.070000e-02

Joint ci ratio: 8.029422e-02	ci left: 1.869244e-02	ci right 2.026424e-02	k: 2336	n:120000
Cons ci ratio: 1.242902e-02	ci left: 4.504054e-01	ci right 4.560468e-01	k: 54387	n:120000
KS ci ratio: 1.001740e-01	ci left: 1.196842e-02	ci right 1.323863e-02	k: 1511	n:120000
PAPPA   120000 perm   33 sec   (3589 perm/sec)   p_kst 1.259167e-02   p_cons 4.532250e-01   p_joint 1.946667e-02

Joint ci ratio: 7.490802e-02	ci left: 1.985738e-02	ci right 2.141026e-02	k: 2681	n:130000
Cons ci ratio: 1.194184e-02	ci left: 4.504989e-01	ci right 4.559186e-01	k: 58917	n:130000
KS ci ratio: 9.583018e-02	ci left: 1.209834e-02	ci right 1.332354e-02	k: 1651	n:130000
PAPPA   130000 perm   37 sec   (3544 perm/sec)   p_kst 1.270000e-02   p_cons 4.532077e-01   p_joint 2.062308e-02

Outputting figure to mutsig2_images.part000000000126/PAPPA.18_4972_130000_0.0127_0.45321_0.020623.png
                gene_name: PAPPA
               theta_stop: 0.096 
                    nperm: 130000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 7 percent done.
PAPPA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.602799e-02	ci left: 8.497808e-01	ci right 8.636107e-01	k: 8568	n:10000
Cons ci ratio: 2.152098e-02	ci left: 7.600043e-01	ci right 7.766391e-01	k: 7684	n:10000
KS ci ratio: 2.620585e-02	ci left: 6.819395e-01	ci right 7.001491e-01	k: 6911	n:10000
PAPPA2   10000 perm   2 sec   (4713 perm/sec)   p_kst 6.911000e-01   p_cons 7.684000e-01   p_joint 8.568000e-01

Outputting figure to mutsig2_images.part000000000126/PAPPA2.16_5517_10000_0.6911_0.7684_0.8568.png
                gene_name: PAPPA2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 9 percent done.
PARP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.119552e-02	ci left: 3.600290e-01	ci right 3.790471e-01	k: 3695	n:10000
Cons ci ratio: 5.481118e-02	ci left: 3.290250e-01	ci right 3.476693e-01	k: 3383	n:10000
KS ci ratio: 5.005077e-02	ci left: 3.705722e-01	ci right 3.896977e-01	k: 3801	n:10000
PARP14   10000 perm   2 sec   (4439 perm/sec)   p_kst 3.801000e-01   p_cons 3.383000e-01   p_joint 3.695000e-01

Outputting figure to mutsig2_images.part000000000126/PARP14.11_5474_10000_0.3801_0.3383_0.3695.png
                gene_name: PARP14
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 11 percent done.
PARP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.059408e-02	ci left: 9.268889e-01	ci right 9.368578e-01	k: 9320	n:10000
KS ci ratio: 1.344460e-02	ci left: 8.886212e-01	ci right 9.007478e-01	k: 8948	n:10000
PARP4   10000 perm   2 sec   (4783 perm/sec)   p_kst 8.948000e-01   p_cons 9.320000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PARP4.10_5307_10000_0.8948_0.932_1.png
                gene_name: PARP4
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
PAPD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.922651e-02	ci left: 7.982126e-01	ci right 8.138088e-01	k: 8061	n:10000
Cons ci ratio: 3.395300e-02	ci left: 5.615307e-01	ci right 5.810277e-01	k: 5713	n:10000
KS ci ratio: 2.554502e-02	ci left: 6.928268e-01	ci right 7.108555e-01	k: 7019	n:10000
PAPD4   10000 perm   2 sec   (5688 perm/sec)   p_kst 7.019000e-01   p_cons 5.713000e-01   p_joint 8.061000e-01

Outputting figure to mutsig2_images.part000000000126/PAPD4.9_1511_10000_0.7019_0.5713_0.8061.png
                gene_name: PAPD4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 14 percent done.
PCCA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.508072e-02	ci left: 1.675982e-01	ci right 1.825915e-01	k: 1750	n:10000
Cons ci ratio: 1.372648e-01	ci left: 7.020239e-02	ci right 8.064655e-02	k: 753	n:10000
KS ci ratio: 4.605704e-02	ci left: 4.103009e-01	ci right 4.297457e-01	k: 4200	n:10000
PCCA   10000 perm   2 sec   (5586 perm/sec)   p_kst 4.200000e-01   p_cons 7.530000e-02   p_joint 1.750000e-01

Joint ci ratio: 6.560972e-02	ci left: 1.464583e-01	ci right 1.564432e-01	k: 3028	n:20000
Cons ci ratio: 9.709772e-02	ci left: 7.167988e-02	ci right 7.904415e-02	k: 1506	n:20000
KS ci ratio: 3.283568e-02	ci left: 4.092065e-01	ci right 4.229179e-01	k: 8321	n:20000
PCCA   20000 perm   4 sec   (5097 perm/sec)   p_kst 4.160500e-01   p_cons 7.530000e-02   p_joint 1.514000e-01

Outputting figure to mutsig2_images.part000000000126/PCCA.9_2283_20000_0.41605_0.0753_0.1514.png
                gene_name: PCCA
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 16 percent done.
PARP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
Cons ci ratio: 2.489076e-01	ci left: 2.118344e-02	ci right 2.729802e-02	k: 241	n:10000
KS ci ratio: 4.833233e-02	ci left: 3.870929e-01	ci right 4.063673e-01	k: 3967	n:10000
PARP8   10000 perm   2 sec   (5605 perm/sec)   p_kst 3.967000e-01   p_cons 2.410000e-02   p_joint 6.190000e-02

Joint ci ratio: 1.225055e-01	ci left: 4.570923e-02	ci right 5.172285e-02	k: 973	n:20000
Cons ci ratio: 1.741732e-01	ci left: 2.254539e-02	ci right 2.689429e-02	k: 493	n:20000
KS ci ratio: 3.389902e-02	ci left: 3.938485e-01	ci right 4.074804e-01	k: 8013	n:20000
PARP8   20000 perm   4 sec   (5060 perm/sec)   p_kst 4.006500e-01   p_cons 2.465000e-02   p_joint 4.865000e-02

Joint ci ratio: 9.129107e-02	ci left: 5.525076e-02	ci right 6.056859e-02	k: 1736	n:30000
Cons ci ratio: 1.470676e-01	ci left: 2.142975e-02	ci right 2.486345e-02	k: 693	n:30000
KS ci ratio: 2.655067e-02	ci left: 4.152047e-01	ci right 4.264106e-01	k: 12624	n:30000
PARP8   30000 perm   6 sec   (4864 perm/sec)   p_kst 4.208000e-01   p_cons 2.310000e-02   p_joint 5.786667e-02

Joint ci ratio: 7.380633e-02	ci left: 6.343853e-02	ci right 6.832472e-02	k: 2634	n:40000
Cons ci ratio: 1.276712e-01	ci left: 2.155318e-02	ci right 2.451662e-02	k: 920	n:40000
KS ci ratio: 2.305415e-02	ci left: 4.146825e-01	ci right 4.243792e-01	k: 16781	n:40000
PARP8   40000 perm   8 sec   (4725 perm/sec)   p_kst 4.195250e-01   p_cons 2.300000e-02   p_joint 6.585000e-02

Joint ci ratio: 7.041774e-02	ci left: 5.630125e-02	ci right 6.043021e-02	k: 2917	n:50000
Cons ci ratio: 1.148713e-01	ci left: 2.145110e-02	ci right 2.408471e-02	k: 1137	n:50000
KS ci ratio: 2.059950e-02	ci left: 4.156886e-01	ci right 4.243607e-01	k: 21001	n:50000
PARP8   50000 perm   11 sec   (4605 perm/sec)   p_kst 4.200200e-01   p_cons 2.274000e-02   p_joint 5.834000e-02

Joint ci ratio: 5.333310e-02	ci left: 8.039280e-02	ci right 8.481434e-02	k: 4955	n:60000
Cons ci ratio: 9.990584e-02	ci left: 2.376545e-02	ci right 2.628078e-02	k: 1500	n:60000
KS ci ratio: 1.875548e-02	ci left: 4.173447e-01	ci right 4.252630e-01	k: 25278	n:60000
PARP8   60000 perm   13 sec   (4481 perm/sec)   p_kst 4.213000e-01   p_cons 2.500000e-02   p_joint 8.258333e-02

Outputting figure to mutsig2_images.part000000000126/PARP8.8_2669_60000_0.4213_0.025_0.082583.png
                gene_name: PARP8
               theta_stop: 0.100 
                    nperm: 60000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.085 

Current progress: 18 percent done.
PARP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.166900e-01	ci left: 9.545302e-02	ci right 1.073803e-01	k: 1013	n:10000
Cons ci ratio: 7.374510e-02	ci left: 2.121107e-01	ci right 2.284526e-01	k: 2202	n:10000
KS ci ratio: 1.478182e-01	ci left: 6.082454e-02	ci right 7.063030e-02	k: 656	n:10000
PARP9   10000 perm   2 sec   (5574 perm/sec)   p_kst 6.560000e-02   p_cons 2.202000e-01   p_joint 1.013000e-01

Joint ci ratio: 9.644178e-02	ci left: 7.260863e-02	ci right 8.001510e-02	k: 1525	n:20000
Cons ci ratio: 5.263680e-02	ci left: 2.113532e-01	ci right 2.228291e-01	k: 4341	n:20000
KS ci ratio: 1.054737e-01	ci left: 6.118290e-02	ci right 6.804434e-02	k: 1291	n:20000
PARP9   20000 perm   4 sec   (5092 perm/sec)   p_kst 6.455000e-02   p_cons 2.170500e-01   p_joint 7.625000e-02

Joint ci ratio: 8.762768e-02	ci left: 5.978667e-02	ci right 6.529843e-02	k: 1875	n:30000
Cons ci ratio: 4.404659e-02	ci left: 2.042454e-01	ci right 2.134777e-01	k: 6265	n:30000
KS ci ratio: 8.506848e-02	ci left: 6.328128e-02	ci right 6.893644e-02	k: 1982	n:30000
PARP9   30000 perm   6 sec   (4877 perm/sec)   p_kst 6.606667e-02   p_cons 2.088333e-01   p_joint 6.250000e-02

Outputting figure to mutsig2_images.part000000000126/PARP9.8_2658_30000_0.066067_0.20883_0.0625.png
                gene_name: PARP9
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.065 

Current progress: 19 percent done.
PCDH12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.538873e-02	ci left: 5.410874e-01	ci right 5.606829e-01	k: 5509	n:10000
Cons ci ratio: 6.356810e-02	ci left: 2.666610e-01	ci right 2.842700e-01	k: 2754	n:10000
KS ci ratio: 2.901577e-02	ci left: 6.365358e-01	ci right 6.553791e-01	k: 6460	n:10000
PCDH12   10000 perm   2 sec   (5792 perm/sec)   p_kst 6.460000e-01   p_cons 2.754000e-01   p_joint 5.509000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH12.8_3571_10000_0.646_0.2754_0.5509.png
                gene_name: PCDH12
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 21 percent done.
PARD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.742191e-02	ci left: 6.620951e-01	ci right 6.806050e-01	k: 6714	n:10000
Cons ci ratio: 5.985006e-02	ci left: 2.911267e-01	ci right 3.091898e-01	k: 3001	n:10000
KS ci ratio: 2.962099e-02	ci left: 6.269838e-01	ci right 6.459367e-01	k: 6365	n:10000
PARD3   10000 perm   2 sec   (5059 perm/sec)   p_kst 6.365000e-01   p_cons 3.001000e-01   p_joint 6.714000e-01

Outputting figure to mutsig2_images.part000000000126/PARD3.7_4206_10000_0.6365_0.3001_0.6714.png
                gene_name: PARD3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 23 percent done.
PASK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.573434e-02	ci left: 6.897011e-01	ci right 7.077830e-01	k: 6988	n:10000
Cons ci ratio: 6.470164e-02	ci left: 2.597333e-01	ci right 2.772017e-01	k: 2684	n:10000
KS ci ratio: 8.536721e-03	ci left: 9.505438e-01	ci right 9.587887e-01	k: 9548	n:10000
PASK   10000 perm   2 sec   (5682 perm/sec)   p_kst 9.548000e-01   p_cons 2.684000e-01   p_joint 6.988000e-01

Outputting figure to mutsig2_images.part000000000126/PASK.7_4040_10000_0.9548_0.2684_0.6988.png
                gene_name: PASK
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 25 percent done.
PAX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.903571e-02	ci left: 8.013591e-01	ci right 8.168604e-01	k: 8092	n:10000
KS ci ratio: 2.615678e-02	ci left: 6.827458e-01	ci right 7.009424e-01	k: 6919	n:10000
PAX3   10000 perm   1 sec   (6725 perm/sec)   p_kst 6.919000e-01   p_cons 8.092000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PAX3.7_1687_10000_0.6919_0.8092_1.png
                gene_name: PAX3
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
PAPOLG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.860295e-02	ci left: 4.977503e-01	ci right 5.174453e-01	k: 5076	n:10000
KS ci ratio: 2.169621e-02	ci left: 7.570693e-01	ci right 7.737758e-01	k: 7655	n:10000
PAPOLG   10000 perm   2 sec   (5718 perm/sec)   p_kst 7.655000e-01   p_cons 5.076000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PAPOLG.6_2299_10000_0.7655_0.5076_1.png
                gene_name: PAPOLG
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
PAQR9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.106525e-01	ci left: 1.052972e-01	ci right 1.177301e-01	k: 1114	n:10000
Cons ci ratio: 1.018103e-01	ci left: 1.224889e-01	ci right 1.357280e-01	k: 1290	n:10000
KS ci ratio: 8.686029e-02	ci left: 1.618004e-01	ci right 1.765928e-01	k: 1691	n:10000
PAQR9   10000 perm   1 sec   (6888 perm/sec)   p_kst 1.691000e-01   p_cons 1.290000e-01   p_joint 1.114000e-01

Joint ci ratio: 5.929161e-02	ci left: 1.740055e-01	ci right 1.846879e-01	k: 3586	n:20000
Cons ci ratio: 6.828811e-02	ci left: 1.365984e-01	ci right 1.463061e-01	k: 2828	n:20000
KS ci ratio: 6.160676e-02	ci left: 1.631384e-01	ci right 1.735582e-01	k: 3366	n:20000
PAQR9   20000 perm   3 sec   (6163 perm/sec)   p_kst 1.683000e-01   p_cons 1.414000e-01   p_joint 1.793000e-01

Outputting figure to mutsig2_images.part000000000126/PAQR9.6_1138_20000_0.1683_0.1414_0.1793.png
                gene_name: PAQR9
               theta_stop: 0.068 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 30 percent done.
PARK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.713038e-02	ci left: 6.668278e-01	ci right 6.852695e-01	k: 6761	n:10000
Cons ci ratio: 4.465815e-02	ci left: 4.253532e-01	ci right 4.448846e-01	k: 4351	n:10000
KS ci ratio: 2.972347e-02	ci left: 6.253754e-01	ci right 6.443460e-01	k: 6349	n:10000
PARK2   10000 perm   2 sec   (6479 perm/sec)   p_kst 6.349000e-01   p_cons 4.351000e-01   p_joint 6.761000e-01

Outputting figure to mutsig2_images.part000000000126/PARK2.6_1446_10000_0.6349_0.4351_0.6761.png
                gene_name: PARK2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 32 percent done.
PAXIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.534987e-02	ci left: 6.960538e-01	ci right 7.140266e-01	k: 7051	n:10000
Cons ci ratio: 5.751282e-02	ci left: 3.079837e-01	ci right 3.263229e-01	k: 3171	n:10000
KS ci ratio: 2.737222e-02	ci left: 6.629006e-01	ci right 6.813991e-01	k: 6722	n:10000
PAXIP1   10000 perm   2 sec   (5708 perm/sec)   p_kst 6.722000e-01   p_cons 3.171000e-01   p_joint 7.051000e-01

Outputting figure to mutsig2_images.part000000000126/PAXIP1.6_3294_10000_0.6722_0.3171_0.7051.png
                gene_name: PAXIP1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 33 percent done.
PBRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.620383e-02	ci left: 8.470282e-01	ci right 8.609649e-01	k: 8541	n:10000
Cons ci ratio: 1.686766e-02	ci left: 8.365345e-01	ci right 8.508647e-01	k: 8438	n:10000
KS ci ratio: 2.892703e-02	ci left: 6.379438e-01	ci right 6.567703e-01	k: 6474	n:10000
PBRM1   10000 perm   2 sec   (5148 perm/sec)   p_kst 6.474000e-01   p_cons 8.438000e-01   p_joint 8.541000e-01

Outputting figure to mutsig2_images.part000000000126/PBRM1.6_5021_10000_0.6474_0.8438_0.8541.png
                gene_name: PBRM1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 35 percent done.
PC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.472179e-02	ci left: 4.246552e-01	ci right 4.441830e-01	k: 4344	n:10000
KS ci ratio: 2.412956e-02	ci left: 7.163357e-01	ci right 7.339330e-01	k: 7252	n:10000
PC   10000 perm   2 sec   (5881 perm/sec)   p_kst 7.252000e-01   p_cons 4.344000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PC.6_3617_10000_0.7252_0.4344_1.png
                gene_name: PC
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
PCBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
KS ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
PCBP1   10000 perm   1 sec   (7522 perm/sec)   p_kst 1.200000e-03   p_cons 1.200000e-03   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 7.834903e-01	ci left: 7.690092e-04	ci right 1.784982e-03	k: 24	n:20000
KS ci ratio: 7.151360e-01	ci left: 9.712961e-04	ci right 2.081783e-03	k: 29	n:20000
PCBP1   20000 perm   3 sec   (6594 perm/sec)   p_kst 1.450000e-03   p_cons 1.200000e-03   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 6.925834e-01	ci left: 7.022045e-04	ci right 1.466416e-03	k: 31	n:30000
KS ci ratio: 5.973559e-01	ci left: 1.009177e-03	ci right 1.891927e-03	k: 42	n:30000
PCBP1   30000 perm   5 sec   (6245 perm/sec)   p_kst 1.400000e-03   p_cons 1.033333e-03   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 5.714476e-01	ci left: 8.420637e-04	ci right 1.533644e-03	k: 46	n:40000
KS ci ratio: 5.056838e-01	ci left: 1.123022e-03	ci right 1.902236e-03	k: 59	n:40000
PCBP1   40000 perm   7 sec   (5999 perm/sec)   p_kst 1.475000e-03   p_cons 1.150000e-03   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 4.935574e-01	ci left: 9.508290e-04	ci right 1.589346e-03	k: 62	n:50000
KS ci ratio: 4.435018e-01	ci left: 1.215529e-03	ci right 1.924365e-03	k: 77	n:50000
PCBP1   50000 perm   9 sec   (5837 perm/sec)   p_kst 1.540000e-03   p_cons 1.240000e-03   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 4.464350e-01	ci left: 9.981151e-04	ci right 1.585169e-03	k: 76	n:60000
KS ci ratio: 4.128908e-01	ci left: 1.191403e-03	ci right 1.825057e-03	k: 89	n:60000
PCBP1   60000 perm   11 sec   (5690 perm/sec)   p_kst 1.483333e-03   p_cons 1.266667e-03   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 4.019076e-01	ci left: 1.085297e-03	ci right 1.643070e-03	k: 94	n:70000
KS ci ratio: 3.840992e-01	ci left: 1.201182e-03	ci right 1.784256e-03	k: 103	n:70000
PCBP1   70000 perm   13 sec   (5561 perm/sec)   p_kst 1.471429e-03   p_cons 1.342857e-03   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 3.769451e-01	ci left: 1.096239e-03	ci right 1.616007e-03	k: 107	n:80000
KS ci ratio: 3.546272e-01	ci left: 1.255186e-03	ci right 1.806978e-03	k: 121	n:80000
PCBP1   80000 perm   15 sec   (5433 perm/sec)   p_kst 1.512500e-03   p_cons 1.337500e-03   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 3.546575e-01	ci left: 1.115706e-03	ci right 1.606229e-03	k: 121	n:90000
KS ci ratio: 3.346513e-01	ci left: 1.267975e-03	ci right 1.787228e-03	k: 136	n:90000
PCBP1   90000 perm   17 sec   (5329 perm/sec)   p_kst 1.511111e-03   p_cons 1.344444e-03   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 3.359069e-01	ci left: 1.132005e-03	ci right 1.597690e-03	k: 135	n:100000
KS ci ratio: 3.096536e-01	ci left: 1.352615e-03	ci right 1.857001e-03	k: 159	n:100000
PCBP1   100000 perm   19 sec   (5226 perm/sec)   p_kst 1.590000e-03   p_cons 1.350000e-03   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 3.253222e-01	ci left: 1.104121e-03	ci right 1.541035e-03	k: 144	n:110000
KS ci ratio: 2.952433e-01	ci left: 1.364075e-03	ci right 1.844635e-03	k: 175	n:110000
PCBP1   110000 perm   21 sec   (5125 perm/sec)   p_kst 1.590909e-03   p_cons 1.309091e-03   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 3.077750e-01	ci left: 1.142535e-03	ci right 1.565487e-03	k: 161	n:120000
KS ci ratio: 2.841603e-01	ci left: 1.358593e-03	ci right 1.816036e-03	k: 189	n:120000
PCBP1   120000 perm   24 sec   (5032 perm/sec)   p_kst 1.575000e-03   p_cons 1.341667e-03   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 2.927916e-01	ci left: 1.175575e-03	ci right 1.585647e-03	k: 178	n:130000
KS ci ratio: 2.722408e-01	ci left: 1.375739e-03	ci right 1.816204e-03	k: 206	n:130000
PCBP1   130000 perm   26 sec   (4937 perm/sec)   p_kst 1.584615e-03   p_cons 1.369231e-03   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 2.841926e-01	ci left: 1.164491e-03	ci right 1.556629e-03	k: 189	n:140000
KS ci ratio: 2.622925e-01	ci left: 1.384103e-03	ci right 1.808397e-03	k: 222	n:140000
PCBP1   140000 perm   29 sec   (4842 perm/sec)   p_kst 1.585714e-03   p_cons 1.350000e-03   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 2.776961e-01	ci left: 1.142630e-03	ci right 1.517073e-03	k: 198	n:150000
KS ci ratio: 2.533608e-01	ci left: 1.391606e-03	ci right 1.801380e-03	k: 238	n:150000
PCBP1   150000 perm   32 sec   (4760 perm/sec)   p_kst 1.586667e-03   p_cons 1.320000e-03   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 2.665413e-01	ci left: 1.170222e-03	ci right 1.535731e-03	k: 215	n:160000
KS ci ratio: 2.448032e-01	ci left: 1.404251e-03	ci right 1.801660e-03	k: 255	n:160000
PCBP1   160000 perm   34 sec   (4674 perm/sec)   p_kst 1.593750e-03   p_cons 1.343750e-03   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 2.577410e-01	ci left: 1.183825e-03	ci right 1.539412e-03	k: 230	n:170000
KS ci ratio: 2.374940e-01	ci left: 1.410080e-03	ci right 1.795472e-03	k: 271	n:170000
PCBP1   170000 perm   37 sec   (4595 perm/sec)   p_kst 1.594118e-03   p_cons 1.352941e-03   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 2.477497e-01	ci left: 1.216932e-03	ci right 1.566111e-03	k: 249	n:180000
KS ci ratio: 2.308027e-01	ci left: 1.415418e-03	ci right 1.789816e-03	k: 287	n:180000
PCBP1   180000 perm   40 sec   (4525 perm/sec)   p_kst 1.594444e-03   p_cons 1.383333e-03   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 2.434102e-01	ci left: 1.197335e-03	ci right 1.533964e-03	k: 258	n:190000
KS ci ratio: 2.261420e-01	ci left: 1.400465e-03	ci right 1.762384e-03	k: 299	n:190000
PCBP1   190000 perm   43 sec   (4454 perm/sec)   p_kst 1.573684e-03   p_cons 1.357895e-03   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 2.379611e-01	ci left: 1.193850e-03	ci right 1.520878e-03	k: 270	n:200000
KS ci ratio: 2.182766e-01	ci left: 1.434323e-03	ci right 1.790372e-03	k: 321	n:200000
PCBP1   200000 perm   46 sec   (4387 perm/sec)   p_kst 1.605000e-03   p_cons 1.350000e-03   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 2.341080e-01	ci left: 1.177321e-03	ci right 1.493844e-03	k: 279	n:210000
KS ci ratio: 2.114867e-01	ci left: 1.460644e-03	ci right 1.810486e-03	k: 342	n:210000
PCBP1   210000 perm   49 sec   (4318 perm/sec)   p_kst 1.628571e-03   p_cons 1.328571e-03   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 2.276915e-01	ci left: 1.192329e-03	ci right 1.502866e-03	k: 295	n:220000
KS ci ratio: 2.067203e-01	ci left: 1.463170e-03	ci right 1.804721e-03	k: 358	n:220000
PCBP1   220000 perm   52 sec   (4236 perm/sec)   p_kst 1.627273e-03   p_cons 1.340909e-03   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 2.228507e-01	ci left: 1.193821e-03	ci right 1.497230e-03	k: 308	n:230000
KS ci ratio: 2.033516e-01	ci left: 1.449048e-03	ci right 1.781105e-03	k: 370	n:230000
PCBP1   230000 perm   55 sec   (4165 perm/sec)   p_kst 1.608696e-03   p_cons 1.339130e-03   p_joint 0

Joint ci ratio: 3.861654e-01	ci left: 3.465496e-04	ci right 5.158975e-04	k: 102	n:240000
Cons ci ratio: 2.183060e-01	ci left: 1.195253e-03	ci right 1.492000e-03	k: 321	n:240000
KS ci ratio: 1.975755e-01	ci left: 1.475740e-03	ci right 1.803151e-03	k: 392	n:240000
PCBP1   240000 perm   59 sec   (4085 perm/sec)   p_kst 1.633333e-03   p_cons 1.337500e-03   p_joint 4.250000e-04

Joint ci ratio: 3.806626e-01	ci left: 3.435308e-04	ci right 5.084131e-04	k: 105	n:250000
Cons ci ratio: 2.121347e-01	ci left: 1.219349e-03	ci right 1.512407e-03	k: 340	n:250000
KS ci ratio: 1.931999e-01	ci left: 1.485189e-03	ci right 1.806542e-03	k: 410	n:250000
PCBP1   250000 perm   62 sec   (4026 perm/sec)   p_kst 1.640000e-03   p_cons 1.360000e-03   p_joint 4.200000e-04

Joint ci ratio: 3.806657e-01	ci left: 3.303177e-04	ci right 4.888596e-04	k: 105	n:260000
Cons ci ratio: 2.076169e-01	ci left: 1.227112e-03	ci right 1.514957e-03	k: 355	n:260000
KS ci ratio: 1.902164e-01	ci left: 1.475666e-03	ci right 1.789457e-03	k: 423	n:260000
PCBP1   260000 perm   66 sec   (3965 perm/sec)   p_kst 1.626923e-03   p_cons 1.365385e-03   p_joint 4.038462e-04

Joint ci ratio: 3.806686e-01	ci left: 3.180833e-04	ci right 4.707544e-04	k: 105	n:270000
Cons ci ratio: 2.042044e-01	ci left: 1.223816e-03	ci right 1.505581e-03	k: 367	n:270000
KS ci ratio: 1.880144e-01	ci left: 1.456294e-03	ci right 1.761972e-03	k: 433	n:270000
PCBP1   270000 perm   69 sec   (3910 perm/sec)   p_kst 1.603704e-03   p_cons 1.359259e-03   p_joint 3.888889e-04

Joint ci ratio: 3.719955e-01	ci left: 3.228915e-04	ci right 4.734800e-04	k: 110	n:280000
Cons ci ratio: 2.001652e-01	ci left: 1.230968e-03	ci right 1.508089e-03	k: 382	n:280000
KS ci ratio: 1.850540e-01	ci left: 1.451948e-03	ci right 1.751377e-03	k: 447	n:280000
PCBP1   280000 perm   73 sec   (3857 perm/sec)   p_kst 1.596429e-03   p_cons 1.364286e-03   p_joint 3.928571e-04

Joint ci ratio: 3.654688e-01	ci left: 3.242725e-04	ci right 4.722186e-04	k: 114	n:290000
Cons ci ratio: 1.956197e-01	ci left: 1.247516e-03	ci right 1.521225e-03	k: 400	n:290000
KS ci ratio: 1.816395e-01	ci left: 1.457812e-03	ci right 1.752292e-03	k: 464	n:290000
PCBP1   290000 perm   76 sec   (3803 perm/sec)   p_kst 1.600000e-03   p_cons 1.379310e-03   p_joint 3.931034e-04

Joint ci ratio: 3.703354e-01	ci left: 3.043872e-04	ci right 4.455586e-04	k: 111	n:300000
Cons ci ratio: 1.643235e-01	ci left: 1.737743e-03	ci right 2.052004e-03	k: 567	n:300000
KS ci ratio: 1.773054e-01	ci left: 1.482443e-03	ci right 1.773987e-03	k: 487	n:300000
PCBP1   300000 perm   80 sec   (3750 perm/sec)   p_kst 1.623333e-03   p_cons 1.890000e-03   p_joint 3.700000e-04

Joint ci ratio: 3.623351e-01	ci left: 3.092129e-04	ci right 4.487928e-04	k: 116	n:310000
Cons ci ratio: 1.612299e-01	ci left: 1.749765e-03	ci right 2.059665e-03	k: 589	n:310000
KS ci ratio: 1.744684e-01	ci left: 1.483963e-03	ci right 1.770644e-03	k: 503	n:310000
PCBP1   310000 perm   84 sec   (3698 perm/sec)   p_kst 1.622581e-03   p_cons 1.900000e-03   p_joint 3.741935e-04

Joint ci ratio: 3.592784e-01	ci left: 3.052333e-04	ci right 4.415824e-04	k: 118	n:320000
Cons ci ratio: 1.594840e-01	ci left: 1.734078e-03	ci right 2.037556e-03	k: 602	n:320000
KS ci ratio: 1.712692e-01	ci left: 1.494396e-03	ci right 1.777252e-03	k: 522	n:320000
PCBP1   320000 perm   88 sec   (3646 perm/sec)   p_kst 1.631250e-03   p_cons 1.881250e-03   p_joint 3.687500e-04

Joint ci ratio: 3.562978e-01	ci left: 3.014996e-04	ci right 4.348045e-04	k: 120	n:330000
Cons ci ratio: 1.576654e-01	ci left: 1.722270e-03	ci right 2.019920e-03	k: 616	n:330000
KS ci ratio: 1.698162e-01	ci left: 1.475218e-03	ci right 1.751834e-03	k: 531	n:330000
PCBP1   330000 perm   92 sec   (3597 perm/sec)   p_kst 1.609091e-03   p_cons 1.866667e-03   p_joint 3.636364e-04

Joint ci ratio: 4.496039e-01	ci left: 1.735105e-04	ci right 2.765015e-04	k: 75	n:340000
Cons ci ratio: 1.552924e-01	ci left: 1.725310e-03	ci right 2.018579e-03	k: 635	n:340000
KS ci ratio: 1.646324e-01	ci left: 1.527649e-03	ci right 1.804485e-03	k: 565	n:340000
PCBP1   340000 perm   96 sec   (3539 perm/sec)   p_kst 1.661765e-03   p_cons 1.867647e-03   p_joint 2.205882e-04

Joint ci ratio: 4.466757e-01	ci left: 1.710876e-04	ci right 2.717792e-04	k: 76	n:350000
Cons ci ratio: 1.529066e-01	ci left: 1.730955e-03	ci right 2.020249e-03	k: 655	n:350000
KS ci ratio: 1.627746e-01	ci left: 1.519622e-03	ci right 1.791592e-03	k: 578	n:350000
PCBP1   350000 perm   100 sec   (3498 perm/sec)   p_kst 1.651429e-03   p_cons 1.871429e-03   p_joint 2.171429e-04

Joint ci ratio: 4.355059e-01	ci left: 1.762122e-04	ci right 2.765673e-04	k: 80	n:360000
Cons ci ratio: 1.507391e-01	ci left: 1.733646e-03	ci right 2.018912e-03	k: 674	n:360000
KS ci ratio: 1.592365e-01	ci left: 1.546725e-03	ci right 1.816953e-03	k: 604	n:360000
PCBP1   360000 perm   104 sec   (3457 perm/sec)   p_kst 1.677778e-03   p_cons 1.872222e-03   p_joint 2.222222e-04

Joint ci ratio: 4.276579e-01	ci left: 1.786769e-04	ci right 2.780763e-04	k: 83	n:370000
Cons ci ratio: 1.482340e-01	ci left: 1.746628e-03	ci right 2.028832e-03	k: 697	n:370000
KS ci ratio: 1.564168e-01	ci left: 1.562034e-03	ci right 1.829651e-03	k: 626	n:370000
PCBP1   370000 perm   108 sec   (3417 perm/sec)   p_kst 1.691892e-03   p_cons 1.883784e-03   p_joint 2.243243e-04

Joint ci ratio: 4.154700e-01	ci left: 1.857371e-04	ci right 2.853041e-04	k: 88	n:380000
Cons ci ratio: 1.461546e-01	ci left: 1.751358e-03	ci right 2.030009e-03	k: 717	n:380000
KS ci ratio: 1.546998e-01	ci left: 1.556335e-03	ci right 1.819778e-03	k: 640	n:380000
PCBP1   380000 perm   113 sec   (3375 perm/sec)   p_kst 1.684211e-03   p_cons 1.886842e-03   p_joint 2.315789e-04

Joint ci ratio: 4.226573e-01	ci left: 1.740933e-04	ci right 2.694900e-04	k: 85	n:390000
Cons ci ratio: 1.440627e-01	ci left: 1.758343e-03	ci right 2.033757e-03	k: 738	n:390000
KS ci ratio: 1.529213e-01	ci left: 1.553410e-03	ci right 1.813058e-03	k: 655	n:390000
PCBP1   390000 perm   117 sec   (3335 perm/sec)   p_kst 1.679487e-03   p_cons 1.892308e-03   p_joint 2.179487e-04

Joint ci ratio: 4.178269e-01	ci left: 1.742121e-04	ci right 2.682786e-04	k: 87	n:400000
Cons ci ratio: 1.421517e-01	ci left: 1.762595e-03	ci right 2.034702e-03	k: 758	n:400000
KS ci ratio: 1.512028e-01	ci left: 1.550648e-03	ci right 1.806658e-03	k: 670	n:400000
PCBP1   400000 perm   121 sec   (3298 perm/sec)   p_kst 1.675000e-03   p_cons 1.895000e-03   p_joint 2.175000e-04

Joint ci ratio: 4.202230e-01	ci left: 1.677811e-04	ci right 2.590407e-04	k: 86	n:410000
Cons ci ratio: 1.406772e-01	ci left: 1.757248e-03	ci right 2.025480e-03	k: 774	n:410000
KS ci ratio: 1.498695e-01	ci left: 1.540992e-03	ci right 1.792963e-03	k: 682	n:410000
PCBP1   410000 perm   126 sec   (3262 perm/sec)   p_kst 1.663415e-03   p_cons 1.887805e-03   p_joint 2.097561e-04

Joint ci ratio: 4.154746e-01	ci left: 1.680475e-04	ci right 2.581329e-04	k: 88	n:420000
Cons ci ratio: 1.391596e-01	ci left: 1.754468e-03	ci right 2.019147e-03	k: 791	n:420000
KS ci ratio: 1.486780e-01	ci left: 1.529514e-03	ci right 1.777443e-03	k: 693	n:420000
PCBP1   420000 perm   130 sec   (3226 perm/sec)   p_kst 1.650000e-03   p_cons 1.883333e-03   p_joint 2.095238e-04

Joint ci ratio: 4.086441e-01	ci left: 1.703929e-04	ci right 2.598259e-04	k: 91	n:430000
Cons ci ratio: 1.379465e-01	ci left: 1.745095e-03	ci right 2.005876e-03	k: 805	n:430000
KS ci ratio: 1.464776e-01	ci left: 1.540978e-03	ci right 1.786745e-03	k: 714	n:430000
PCBP1   430000 perm   135 sec   (3188 perm/sec)   p_kst 1.660465e-03   p_cons 1.872093e-03   p_joint 2.116279e-04

Joint ci ratio: 4.086451e-01	ci left: 1.665203e-04	ci right 2.539209e-04	k: 91	n:440000
Cons ci ratio: 1.362660e-01	ci left: 1.749329e-03	ci right 2.007301e-03	k: 825	n:440000
KS ci ratio: 1.453646e-01	ci left: 1.530042e-03	ci right 1.772050e-03	k: 725	n:440000
PCBP1   440000 perm   140 sec   (3153 perm/sec)   p_kst 1.647727e-03   p_cons 1.875000e-03   p_joint 2.068182e-04

Joint ci ratio: 4.042744e-01	ci left: 1.668098e-04	ci right 2.531747e-04	k: 93	n:450000
Cons ci ratio: 1.346455e-01	ci left: 1.753394e-03	ci right 2.008644e-03	k: 845	n:450000
KS ci ratio: 1.446704e-01	ci left: 1.511032e-03	ci right 1.748792e-03	k: 732	n:450000
PCBP1   450000 perm   144 sec   (3119 perm/sec)   p_kst 1.626667e-03   p_cons 1.877778e-03   p_joint 2.066667e-04

Joint ci ratio: 4.021415e-01	ci left: 1.651369e-04	ci right 2.500643e-04	k: 94	n:460000
Cons ci ratio: 1.331585e-01	ci left: 1.755198e-03	ci right 2.007664e-03	k: 864	n:460000
KS ci ratio: 1.430213e-01	ci left: 1.513810e-03	ci right 1.749061e-03	k: 749	n:460000
PCBP1   460000 perm   149 sec   (3085 perm/sec)   p_kst 1.628261e-03   p_cons 1.878261e-03   p_joint 2.043478e-04

Joint ci ratio: 3.959381e-01	ci left: 1.673658e-04	ci right 2.517640e-04	k: 97	n:470000
Cons ci ratio: 1.315706e-01	ci left: 1.761055e-03	ci right 2.011107e-03	k: 885	n:470000
KS ci ratio: 1.411511e-01	ci left: 1.522642e-03	ci right 1.755911e-03	k: 769	n:470000
PCBP1   470000 perm   154 sec   (3048 perm/sec)   p_kst 1.636170e-03   p_cons 1.882979e-03   p_joint 2.063830e-04

Joint ci ratio: 3.862072e-01	ci left: 1.732716e-04	ci right 2.579546e-04	k: 102	n:480000
Cons ci ratio: 1.306895e-01	ci left: 1.748545e-03	ci right 1.995030e-03	k: 897	n:480000
KS ci ratio: 1.406059e-01	ci left: 1.502979e-03	ci right 1.732271e-03	k: 775	n:480000
PCBP1   480000 perm   159 sec   (3015 perm/sec)   p_kst 1.614583e-03   p_cons 1.868750e-03   p_joint 2.125000e-04

Joint ci ratio: 3.843464e-01	ci left: 1.715785e-04	ci right 2.549279e-04	k: 103	n:490000
Cons ci ratio: 1.289767e-01	ci left: 1.760250e-03	ci right 2.004884e-03	k: 921	n:490000
KS ci ratio: 1.390027e-01	ci left: 1.507756e-03	ci right 1.734937e-03	k: 793	n:490000
PCBP1   490000 perm   164 sec   (2981 perm/sec)   p_kst 1.618367e-03   p_cons 1.879592e-03   p_joint 2.102041e-04

Joint ci ratio: 3.825123e-01	ci left: 1.699541e-04	ci right 2.520213e-04	k: 104	n:500000
Cons ci ratio: 1.280777e-01	ci left: 1.750208e-03	ci right 1.991622e-03	k: 934	n:500000
KS ci ratio: 1.377935e-01	ci left: 1.504631e-03	ci right 1.729208e-03	k: 807	n:500000
PCBP1   500000 perm   169 sec   (2952 perm/sec)   p_kst 1.614000e-03   p_cons 1.868000e-03   p_joint 2.080000e-04

Joint ci ratio: 3.807041e-01	ci left: 1.683944e-04	ci right 2.492277e-04	k: 105	n:510000
Cons ci ratio: 1.267958e-01	ci left: 1.751958e-03	ci right 1.991013e-03	k: 953	n:510000
KS ci ratio: 1.366986e-01	ci left: 1.499743e-03	ci right 1.721667e-03	k: 820	n:510000
PCBP1   510000 perm   175 sec   (2920 perm/sec)   p_kst 1.607843e-03   p_cons 1.868627e-03   p_joint 2.058824e-04

Joint ci ratio: 3.825138e-01	ci left: 1.634173e-04	ci right 2.423283e-04	k: 104	n:520000
Cons ci ratio: 1.262031e-01	ci left: 1.735025e-03	ci right 1.970580e-03	k: 962	n:520000
KS ci ratio: 1.357927e-01	ci left: 1.491334e-03	ci right 1.710433e-03	k: 831	n:520000
PCBP1   520000 perm   180 sec   (2890 perm/sec)   p_kst 1.598077e-03   p_cons 1.850000e-03   p_joint 2.000000e-04

Joint ci ratio: 3.843495e-01	ci left: 1.586290e-04	ci right 2.356884e-04	k: 103	n:530000
Cons ci ratio: 1.249125e-01	ci left: 1.738840e-03	ci right 1.972320e-03	k: 982	n:530000
KS ci ratio: 1.345055e-01	ci left: 1.492364e-03	ci right 1.709369e-03	k: 847	n:530000
PCBP1   530000 perm   185 sec   (2859 perm/sec)   p_kst 1.598113e-03   p_cons 1.852830e-03   p_joint 1.943396e-04

Joint ci ratio: 3.843503e-01	ci left: 1.556914e-04	ci right 2.313239e-04	k: 103	n:540000
Cons ci ratio: 1.234758e-01	ci left: 1.747909e-03	ci right 1.979710e-03	k: 1005	n:540000
KS ci ratio: 1.333316e-01	ci left: 1.491574e-03	ci right 1.706422e-03	k: 862	n:540000
PCBP1   540000 perm   191 sec   (2828 perm/sec)   p_kst 1.596296e-03   p_cons 1.861111e-03   p_joint 1.907407e-04

Joint ci ratio: 3.754304e-01	ci left: 1.610836e-04	ci right 2.370728e-04	k: 108	n:550000
Cons ci ratio: 1.220875e-01	ci left: 1.756663e-03	ci right 1.986817e-03	k: 1028	n:550000
KS ci ratio: 1.322633e-01	ci left: 1.489064e-03	ci right 1.701696e-03	k: 876	n:550000
PCBP1   550000 perm   196 sec   (2799 perm/sec)   p_kst 1.592727e-03   p_cons 1.869091e-03   p_joint 1.963636e-04

Joint ci ratio: 3.720327e-01	ci left: 1.614431e-04	ci right 2.367448e-04	k: 110	n:560000
Cons ci ratio: 1.210916e-01	ci left: 1.754728e-03	ci right 1.982618e-03	k: 1045	n:560000
KS ci ratio: 1.312203e-01	ci left: 1.486649e-03	ci right 1.697132e-03	k: 890	n:560000
PCBP1   560000 perm   202 sec   (2766 perm/sec)   p_kst 1.589286e-03   p_cons 1.866071e-03   p_joint 1.964286e-04

Joint ci ratio: 3.862138e-01	ci left: 1.459125e-04	ci right 2.172257e-04	k: 102	n:570000
Cons ci ratio: 1.198375e-01	ci left: 1.761377e-03	ci right 1.987594e-03	k: 1067	n:570000
KS ci ratio: 1.302016e-01	ci left: 1.484326e-03	ci right 1.692722e-03	k: 904	n:570000
PCBP1   570000 perm   208 sec   (2738 perm/sec)   p_kst 1.585965e-03   p_cons 1.871930e-03   p_joint 1.789474e-04

Joint ci ratio: 3.919659e-01	ci left: 1.387302e-04	ci right 2.078047e-04	k: 99	n:580000
Cons ci ratio: 1.185672e-01	ci left: 1.769482e-03	ci right 1.994161e-03	k: 1090	n:580000
KS ci ratio: 1.286467e-01	ci left: 1.495437e-03	ci right 1.702695e-03	k: 926	n:580000
PCBP1   580000 perm   214 sec   (2708 perm/sec)   p_kst 1.596552e-03   p_cons 1.879310e-03   p_joint 1.706897e-04

Joint ci ratio: 3.900209e-01	ci left: 1.379071e-04	ci right 2.061433e-04	k: 100	n:590000
Cons ci ratio: 1.175480e-01	ci left: 1.770743e-03	ci right 1.993516e-03	k: 1109	n:590000
KS ci ratio: 1.279590e-01	ci left: 1.486496e-03	ci right 1.691330e-03	k: 936	n:590000
PCBP1   590000 perm   220 sec   (2681 perm/sec)   p_kst 1.586441e-03   p_cons 1.879661e-03   p_joint 1.694915e-04

Joint ci ratio: 3.881045e-01	ci left: 1.371123e-04	ci right 2.045366e-04	k: 101	n:600000
Cons ci ratio: 1.161431e-01	ci left: 1.784916e-03	ci right 2.006604e-03	k: 1136	n:600000
KS ci ratio: 1.264821e-01	ci left: 1.497221e-03	ci right 1.700973e-03	k: 958	n:600000
PCBP1   600000 perm   226 sec   (2655 perm/sec)   p_kst 1.596667e-03   p_cons 1.893333e-03   p_joint 1.683333e-04

Joint ci ratio: 3.881051e-01	ci left: 1.348645e-04	ci right 2.011836e-04	k: 101	n:610000
Cons ci ratio: 1.151348e-01	ci left: 1.787494e-03	ci right 2.007444e-03	k: 1156	n:610000
KS ci ratio: 1.251191e-01	ci left: 1.506020e-03	ci right 1.708597e-03	k: 979	n:610000
PCBP1   610000 perm   232 sec   (2629 perm/sec)   p_kst 1.604918e-03   p_cons 1.895082e-03   p_joint 1.655738e-04

Joint ci ratio: 4.466974e-01	ci left: 9.658078e-05	ci right 1.534256e-04	k: 76	n:620000
Cons ci ratio: 1.142984e-01	ci left: 1.785296e-03	ci right 2.003272e-03	k: 1173	n:620000
KS ci ratio: 1.239233e-01	ci left: 1.511420e-03	ci right 1.712638e-03	k: 998	n:620000
PCBP1   620000 perm   238 sec   (2602 perm/sec)   p_kst 1.609677e-03   p_cons 1.891935e-03   p_joint 1.225806e-04

Joint ci ratio: 4.938485e-01	ci left: 7.545326e-05	ci right 1.261589e-04	k: 62	n:630000
Cons ci ratio: 1.136234e-01	ci left: 1.778546e-03	ci right 1.994330e-03	k: 1187	n:630000
KS ci ratio: 1.226405e-01	ci left: 1.519735e-03	ci right 1.719813e-03	k: 1019	n:630000
PCBP1   630000 perm   244 sec   (2579 perm/sec)   p_kst 1.617460e-03   p_cons 1.884127e-03   p_joint 9.841270e-05

Joint ci ratio: 4.899751e-01	ci left: 7.564288e-05	ci right 1.259426e-04	k: 63	n:640000
Cons ci ratio: 1.128192e-01	ci left: 1.776566e-03	ci right 1.990483e-03	k: 1204	n:640000
KS ci ratio: 1.216898e-01	ci left: 1.520225e-03	ci right 1.718705e-03	k: 1035	n:640000
PCBP1   640000 perm   251 sec   (2551 perm/sec)   p_kst 1.617187e-03   p_cons 1.881250e-03   p_joint 9.843750e-05

Joint ci ratio: 4.753446e-01	ci left: 7.988406e-05	ci right 1.309022e-04	k: 67	n:650000
Cons ci ratio: 1.120319e-01	ci left: 1.774653e-03	ci right 1.986749e-03	k: 1221	n:650000
KS ci ratio: 1.205887e-01	ci left: 1.525182e-03	ci right 1.722379e-03	k: 1054	n:650000
PCBP1   650000 perm   258 sec   (2523 perm/sec)   p_kst 1.621538e-03   p_cons 1.878462e-03   p_joint 1.030769e-04

Joint ci ratio: 4.753450e-01	ci left: 7.867369e-05	ci right 1.289189e-04	k: 67	n:660000
Cons ci ratio: 1.112608e-01	ci left: 1.772802e-03	ci right 1.983123e-03	k: 1238	n:660000
KS ci ratio: 1.199654e-01	ci left: 1.518238e-03	ci right 1.713451e-03	k: 1065	n:660000
PCBP1   660000 perm   264 sec   (2500 perm/sec)   p_kst 1.613636e-03   p_cons 1.875758e-03   p_joint 1.015152e-04

Joint ci ratio: 4.718879e-01	ci left: 7.881376e-05	ci right 1.286642e-04	k: 68	n:670000
Cons ci ratio: 1.103295e-01	ci left: 1.776818e-03	ci right 1.985736e-03	k: 1259	n:670000
KS ci ratio: 1.192408e-01	ci left: 1.514400e-03	ci right 1.707860e-03	k: 1078	n:670000
PCBP1   670000 perm   270 sec   (2478 perm/sec)   p_kst 1.608955e-03   p_cons 1.879104e-03   p_joint 1.014925e-04

Joint ci ratio: 4.651938e-01	ci left: 8.024855e-05	ci right 1.300582e-04	k: 70	n:680000
Cons ci ratio: 1.093785e-01	ci left: 1.782152e-03	ci right 1.989775e-03	k: 1281	n:680000
KS ci ratio: 1.186381e-01	ci left: 1.507825e-03	ci right 1.699403e-03	k: 1089	n:680000
PCBP1   680000 perm   277 sec   (2457 perm/sec)   p_kst 1.601471e-03   p_cons 1.883824e-03   p_joint 1.029412e-04

Joint ci ratio: 4.556660e-01	ci left: 8.292893e-05	ci right 1.330222e-04	k: 73	n:690000
Cons ci ratio: 1.087445e-01	ci left: 1.777470e-03	ci right 1.983270e-03	k: 1296	n:690000
KS ci ratio: 1.175641e-01	ci left: 1.514102e-03	ci right 1.704615e-03	k: 1109	n:690000
PCBP1   690000 perm   283 sec   (2436 perm/sec)   p_kst 1.607246e-03   p_cons 1.878261e-03   p_joint 1.057971e-04

Joint ci ratio: 4.526180e-01	ci left: 8.300933e-05	ci right 1.327128e-04	k: 74	n:700000
Cons ci ratio: 1.080801e-01	ci left: 1.774315e-03	ci right 1.978414e-03	k: 1312	n:700000
KS ci ratio: 1.167258e-01	ci left: 1.514659e-03	ci right 1.703790e-03	k: 1125	n:700000
PCBP1   700000 perm   290 sec   (2414 perm/sec)   p_kst 1.607143e-03   p_cons 1.874286e-03   p_joint 1.057143e-04

Joint ci ratio: 4.467009e-01	ci left: 8.433802e-05	ci right 1.339775e-04	k: 76	n:710000
Cons ci ratio: 1.070651e-01	ci left: 1.783589e-03	ci right 1.986707e-03	k: 1337	n:710000
KS ci ratio: 1.155511e-01	ci left: 1.524780e-03	ci right 1.713127e-03	k: 1148	n:710000
PCBP1   710000 perm   297 sec   (2394 perm/sec)   p_kst 1.616901e-03   p_cons 1.883099e-03   p_joint 1.070423e-04

Joint ci ratio: 5.285521e-01	ci left: 5.634279e-05	ci right 9.785761e-05	k: 54	n:720000
Cons ci ratio: 1.062737e-01	ci left: 1.785853e-03	ci right 1.987633e-03	k: 1357	n:720000
KS ci ratio: 1.149032e-01	ci left: 1.521137e-03	ci right 1.707909e-03	k: 1161	n:720000
PCBP1   720000 perm   303 sec   (2373 perm/sec)   p_kst 1.612500e-03   p_cons 1.884722e-03   p_joint 7.500000e-05

Joint ci ratio: 5.191961e-01	ci left: 5.794817e-05	ci right 9.961620e-05	k: 56	n:730000
Cons ci ratio: 1.055380e-01	ci left: 1.786728e-03	ci right 1.987121e-03	k: 1376	n:730000
KS ci ratio: 1.140233e-01	ci left: 1.524251e-03	ci right 1.709876e-03	k: 1179	n:730000
PCBP1   730000 perm   310 sec   (2354 perm/sec)   p_kst 1.615068e-03   p_cons 1.884932e-03   p_joint 7.671233e-05

Joint ci ratio: 5.191963e-01	ci left: 5.716508e-05	ci right 9.827005e-05	k: 56	n:740000
Cons ci ratio: 1.049303e-01	ci left: 1.783635e-03	ci right 1.982459e-03	k: 1392	n:740000
KS ci ratio: 1.132106e-01	ci left: 1.525974e-03	ci right 1.710396e-03	k: 1196	n:740000
PCBP1   740000 perm   317 sec   (2334 perm/sec)   p_kst 1.616216e-03   p_cons 1.881081e-03   p_joint 7.567568e-05

Joint ci ratio: 5.191966e-01	ci left: 5.640288e-05	ci right 9.695980e-05	k: 56	n:750000
Cons ci ratio: 1.044073e-01	ci left: 1.778031e-03	ci right 1.975182e-03	k: 1406	n:750000
KS ci ratio: 1.124151e-01	ci left: 1.527654e-03	ci right 1.710896e-03	k: 1213	n:750000
PCBP1   750000 perm   324 sec   (2315 perm/sec)   p_kst 1.617333e-03   p_cons 1.874667e-03   p_joint 7.466667e-05

Joint ci ratio: 5.103204e-01	ci left: 5.795027e-05	ci right 9.865475e-05	k: 58	n:760000
Cons ci ratio: 1.037094e-01	ci left: 1.778985e-03	ci right 1.974843e-03	k: 1425	n:760000
KS ci ratio: 1.116361e-01	ci left: 1.529295e-03	ci right 1.711379e-03	k: 1230	n:760000
PCBP1   760000 perm   331 sec   (2297 perm/sec)   p_kst 1.618421e-03   p_cons 1.875000e-03   p_joint 7.631579e-05

Joint ci ratio: 5.060498e-01	ci left: 5.832976e-05	ci right 9.883748e-05	k: 59	n:770000
Cons ci ratio: 1.028828e-01	ci left: 1.784980e-03	ci right 1.979837e-03	k: 1448	n:770000
KS ci ratio: 1.109622e-01	ci left: 1.528373e-03	ci right 1.709176e-03	k: 1245	n:770000
PCBP1   770000 perm   338 sec   (2278 perm/sec)   p_kst 1.616883e-03   p_cons 1.880519e-03   p_joint 7.662338e-05

Joint ci ratio: 5.018846e-01	ci left: 5.870091e-05	ci right 9.901415e-05	k: 60	n:780000
Cons ci ratio: 1.023546e-01	ci left: 1.780833e-03	ci right 1.974179e-03	k: 1463	n:780000
KS ci ratio: 1.102566e-01	ci left: 1.528723e-03	ci right 1.708344e-03	k: 1261	n:780000
PCBP1   780000 perm   345 sec   (2259 perm/sec)   p_kst 1.616667e-03   p_cons 1.875641e-03   p_joint 7.692308e-05

Joint ci ratio: 5.060503e-01	ci left: 5.685305e-05	ci right 9.633529e-05	k: 59	n:790000
Cons ci ratio: 1.020074e-01	ci left: 1.770625e-03	ci right 1.962171e-03	k: 1473	n:790000
KS ci ratio: 1.094785e-01	ci left: 1.531531e-03	ci right 1.710130e-03	k: 1279	n:790000
PCBP1   790000 perm   353 sec   (2240 perm/sec)   p_kst 1.618987e-03   p_cons 1.864557e-03   p_joint 7.468354e-05

Joint ci ratio: 5.060505e-01	ci left: 5.614238e-05	ci right 9.513111e-05	k: 59	n:800000
Cons ci ratio: 1.011866e-01	ci left: 1.777730e-03	ci right 1.968406e-03	k: 1497	n:800000
KS ci ratio: 1.090961e-01	ci left: 1.523329e-03	ci right 1.700311e-03	k: 1288	n:800000
PCBP1   800000 perm   360 sec   (2222 perm/sec)   p_kst 1.610000e-03   p_cons 1.871250e-03   p_joint 7.375000e-05

Joint ci ratio: 5.103216e-01	ci left: 5.437307e-05	ci right 9.256502e-05	k: 58	n:810000
Cons ci ratio: 1.006507e-01	ci left: 1.775037e-03	ci right 1.964356e-03	k: 1513	n:810000
KS ci ratio: 1.084669e-01	ci left: 1.522537e-03	ci right 1.698342e-03	k: 1303	n:810000
PCBP1   810000 perm   367 sec   (2205 perm/sec)   p_kst 1.608642e-03   p_cons 1.867901e-03   p_joint 7.160494e-05

Joint ci ratio: 5.103219e-01	ci left: 5.370998e-05	ci right 9.143619e-05	k: 58	n:820000
Cons ci ratio: 9.989448e-02	ci left: 1.780736e-03	ci right 1.969152e-03	k: 1536	n:820000
KS ci ratio: 1.079715e-01	ci left: 1.518208e-03	ci right 1.692660e-03	k: 1315	n:820000
PCBP1   820000 perm   375 sec   (2189 perm/sec)   p_kst 1.603659e-03   p_cons 1.873171e-03   p_joint 7.073171e-05

Joint ci ratio: 5.103221e-01	ci left: 5.306286e-05	ci right 9.033456e-05	k: 58	n:830000
Cons ci ratio: 9.931467e-02	ci left: 1.780428e-03	ci right 1.967654e-03	k: 1554	n:830000
KS ci ratio: 1.072002e-01	ci left: 1.522192e-03	ci right 1.695774e-03	k: 1334	n:830000
PCBP1   830000 perm   382 sec   (2172 perm/sec)   p_kst 1.607229e-03   p_cons 1.872289e-03   p_joint 6.987952e-05

Joint ci ratio: 5.103223e-01	ci left: 5.243116e-05	ci right 8.925916e-05	k: 58	n:840000
Cons ci ratio: 9.874485e-02	ci left: 1.780130e-03	ci right 1.966189e-03	k: 1572	n:840000
KS ci ratio: 1.065241e-01	ci left: 1.523768e-03	ci right 1.696365e-03	k: 1351	n:840000
PCBP1   840000 perm   390 sec   (2153 perm/sec)   p_kst 1.608333e-03   p_cons 1.871429e-03   p_joint 6.904762e-05

Joint ci ratio: 5.103225e-01	ci left: 5.181431e-05	ci right 8.820906e-05	k: 58	n:850000
Cons ci ratio: 9.830861e-02	ci left: 1.775252e-03	ci right 1.959934e-03	k: 1586	n:850000
KS ci ratio: 1.058993e-01	ci left: 1.524165e-03	ci right 1.695731e-03	k: 1367	n:850000
PCBP1   850000 perm   398 sec   (2138 perm/sec)   p_kst 1.608235e-03   p_cons 1.865882e-03   p_joint 6.823529e-05

Joint ci ratio: 5.060519e-01	ci left: 5.222544e-05	ci right 8.849412e-05	k: 59	n:860000
Cons ci ratio: 9.775583e-02	ci left: 1.775027e-03	ci right 1.958587e-03	k: 1604	n:860000
KS ci ratio: 1.053616e-01	ci left: 1.522291e-03	ci right 1.692722e-03	k: 1381	n:860000
PCBP1   860000 perm   405 sec   (2122 perm/sec)   p_kst 1.605814e-03   p_cons 1.865116e-03   p_joint 6.860465e-05

Joint ci ratio: 5.285557e-01	ci left: 4.662845e-05	ci right 8.098577e-05	k: 54	n:870000
Cons ci ratio: 9.712238e-02	ci left: 1.778174e-03	ci right 1.960800e-03	k: 1625	n:870000
KS ci ratio: 1.047945e-01	ci left: 1.521581e-03	ci right 1.690960e-03	k: 1396	n:870000
PCBP1   870000 perm   413 sec   (2105 perm/sec)   p_kst 1.604598e-03   p_cons 1.867816e-03   p_joint 6.206897e-05

Joint ci ratio: 5.238151e-01	ci left: 4.708389e-05	ci right 8.135157e-05	k: 55	n:880000
Cons ci ratio: 9.658927e-02	ci left: 1.777926e-03	ci right 1.959469e-03	k: 1643	n:880000
KS ci ratio: 1.040889e-01	ci left: 1.525318e-03	ci right 1.693899e-03	k: 1415	n:880000
PCBP1   880000 perm   421 sec   (2090 perm/sec)   p_kst 1.607955e-03   p_cons 1.867045e-03   p_joint 6.250000e-05

Joint ci ratio: 5.238153e-01	ci left: 4.655485e-05	ci right 8.043752e-05	k: 55	n:890000
Cons ci ratio: 9.606483e-02	ci left: 1.777687e-03	ci right 1.958164e-03	k: 1661	n:890000
KS ci ratio: 1.034335e-01	ci left: 1.527879e-03	ci right 1.695616e-03	k: 1433	n:890000
PCBP1   890000 perm   429 sec   (2076 perm/sec)   p_kst 1.610112e-03   p_cons 1.866292e-03   p_joint 6.179775e-05

Joint ci ratio: 5.238154e-01	ci left: 4.603757e-05	ci right 7.954378e-05	k: 55	n:900000
Cons ci ratio: 9.549192e-02	ci left: 1.779625e-03	ci right 1.959161e-03	k: 1681	n:900000
KS ci ratio: 1.030036e-01	ci left: 1.523892e-03	ci right 1.690453e-03	k: 1445	n:900000
PCBP1   900000 perm   437 sec   (2061 perm/sec)   p_kst 1.605556e-03   p_cons 1.867778e-03   p_joint 6.111111e-05

Joint ci ratio: 5.238156e-01	ci left: 4.553166e-05	ci right 7.866968e-05	k: 55	n:910000
Cons ci ratio: 9.481757e-02	ci left: 1.785815e-03	ci right 1.964632e-03	k: 1705	n:910000
KS ci ratio: 1.024384e-01	ci left: 1.524276e-03	ci right 1.689911e-03	k: 1461	n:910000
PCBP1   910000 perm   445 sec   (2046 perm/sec)   p_kst 1.605495e-03   p_cons 1.873626e-03   p_joint 6.043956e-05

Joint ci ratio: 5.238158e-01	ci left: 4.503675e-05	ci right 7.781458e-05	k: 55	n:920000
Cons ci ratio: 9.432133e-02	ci left: 1.785506e-03	ci right 1.963305e-03	k: 1723	n:920000
KS ci ratio: 1.016760e-01	ci left: 1.531011e-03	ci right 1.696065e-03	k: 1483	n:920000
PCBP1   920000 perm   453 sec   (2031 perm/sec)   p_kst 1.611957e-03   p_cons 1.872826e-03   p_joint 5.978261e-05

Joint ci ratio: 5.599849e-01	ci left: 3.805552e-05	ci right 6.843065e-05	k: 48	n:930000
Cons ci ratio: 9.380582e-02	ci left: 1.786257e-03	ci right 1.963105e-03	k: 1742	n:930000
KS ci ratio: 1.011323e-01	ci left: 1.531317e-03	ci right 1.695469e-03	k: 1499	n:930000
PCBP1   930000 perm   461 sec   (2015 perm/sec)   p_kst 1.611828e-03   p_cons 1.873118e-03   p_joint 5.161290e-05

Joint ci ratio: 5.599851e-01	ci left: 3.765067e-05	ci right 6.770267e-05	k: 48	n:940000
Cons ci ratio: 9.319275e-02	ci left: 1.791150e-03	ci right 1.967261e-03	k: 1765	n:940000
KS ci ratio: 1.004645e-01	ci left: 1.535766e-03	ci right 1.699244e-03	k: 1519	n:940000
PCBP1   940000 perm   470 sec   (2002 perm/sec)   p_kst 1.615957e-03   p_cons 1.877660e-03   p_joint 5.106383e-05

Joint ci ratio: 5.599853e-01	ci left: 3.725434e-05	ci right 6.699001e-05	k: 48	n:950000
Cons ci ratio: 9.282578e-02	ci left: 1.786690e-03	ci right 1.961633e-03	k: 1779	n:950000
KS ci ratio: 1.001360e-01	ci left: 1.529862e-03	ci right 1.692148e-03	k: 1529	n:950000
PCBP1   950000 perm   478 sec   (1987 perm/sec)   p_kst 1.609474e-03   p_cons 1.872632e-03   p_joint 5.052632e-05

Joint ci ratio: 5.599854e-01	ci left: 3.686628e-05	ci right 6.629221e-05	k: 48	n:960000
Cons ci ratio: 9.251478e-02	ci left: 1.780289e-03	ci right 1.953989e-03	k: 1791	n:960000
KS ci ratio: 9.984312e-02	ci left: 1.523067e-03	ci right 1.684131e-03	k: 1538	n:960000
PCBP1   960000 perm   487 sec   (1972 perm/sec)   p_kst 1.602083e-03   p_cons 1.865625e-03   p_joint 5.000000e-05

Joint ci ratio: 5.543571e-01	ci left: 3.737184e-05	ci right 6.678358e-05	k: 49	n:970000
Cons ci ratio: 9.174943e-02	ci left: 1.792151e-03	ci right 1.965484e-03	k: 1821	n:970000
KS ci ratio: 9.936014e-02	ci left: 1.522444e-03	ci right 1.682618e-03	k: 1553	n:970000
PCBP1   970000 perm   496 sec   (1958 perm/sec)   p_kst 1.601031e-03   p_cons 1.877320e-03   p_joint 5.051546e-05

Joint ci ratio: 5.543573e-01	ci left: 3.699050e-05	ci right 6.610212e-05	k: 49	n:980000
Cons ci ratio: 9.117556e-02	ci left: 1.796797e-03	ci right 1.969434e-03	k: 1844	n:980000
KS ci ratio: 9.894728e-02	ci left: 1.519845e-03	ci right 1.679043e-03	k: 1566	n:980000
PCBP1   980000 perm   504 sec   (1944 perm/sec)   p_kst 1.597959e-03   p_cons 1.881633e-03   p_joint 5.000000e-05

Joint ci ratio: 5.543574e-01	ci left: 3.661685e-05	ci right 6.543443e-05	k: 49	n:990000
Cons ci ratio: 9.075848e-02	ci left: 1.795428e-03	ci right 1.967103e-03	k: 1861	n:990000
KS ci ratio: 9.835266e-02	ci left: 1.523211e-03	ci right 1.681748e-03	k: 1585	n:990000
PCBP1   990000 perm   513 sec   (1930 perm/sec)   p_kst 1.601010e-03   p_cons 1.879798e-03   p_joint 4.949495e-05

Joint ci ratio: 5.488955e-01	ci left: 3.711118e-05	ci right 6.591824e-05	k: 50	n:1000000
Cons ci ratio: 9.039528e-02	ci left: 1.792134e-03	ci right 1.962772e-03	k: 1876	n:1000000
KS ci ratio: 9.789088e-02	ci left: 1.522611e-03	ci right 1.680298e-03	k: 1600	n:1000000
PCBP1   1000000 perm   522 sec   (1917 perm/sec)   p_kst 1.600000e-03   p_cons 1.876000e-03   p_joint 5.000000e-05

Joint ci ratio: 5.488957e-01	ci left: 3.674374e-05	ci right 6.526559e-05	k: 50	n:1010000
Cons ci ratio: 9.006025e-02	ci left: 1.787938e-03	ci right 1.957513e-03	k: 1890	n:1010000
KS ci ratio: 9.731500e-02	ci left: 1.525889e-03	ci right 1.682932e-03	k: 1619	n:1010000
PCBP1   1010000 perm   530 sec   (1905 perm/sec)   p_kst 1.602970e-03   p_cons 1.871287e-03   p_joint 4.950495e-05

Joint ci ratio: 5.488958e-01	ci left: 3.638351e-05	ci right 6.462574e-05	k: 50	n:1020000
Cons ci ratio: 8.987082e-02	ci left: 1.778076e-03	ci right 1.946342e-03	k: 1898	n:1020000
KS ci ratio: 9.686762e-02	ci left: 1.525278e-03	ci right 1.681496e-03	k: 1634	n:1020000
PCBP1   1020000 perm   539 sec   (1892 perm/sec)   p_kst 1.601961e-03   p_cons 1.860784e-03   p_joint 4.901961e-05

Joint ci ratio: 5.435922e-01	ci left: 3.686706e-05	ci right 6.510200e-05	k: 51	n:1030000
Cons ci ratio: 8.951813e-02	ci left: 1.775049e-03	ci right 1.942335e-03	k: 1913	n:1030000
KS ci ratio: 9.642635e-02	ci left: 1.524680e-03	ci right 1.680086e-03	k: 1649	n:1030000
PCBP1   1030000 perm   548 sec   (1880 perm/sec)   p_kst 1.600971e-03   p_cons 1.857282e-03   p_joint 4.951456e-05

Joint ci ratio: 5.435923e-01	ci left: 3.651257e-05	ci right 6.447602e-05	k: 51	n:1040000
Cons ci ratio: 8.898488e-02	ci left: 1.779604e-03	ci right 1.946267e-03	k: 1936	n:1040000
KS ci ratio: 9.587578e-02	ci left: 1.527850e-03	ci right 1.682639e-03	k: 1668	n:1040000
PCBP1   1040000 perm   557 sec   (1867 perm/sec)   p_kst 1.603846e-03   p_cons 1.861538e-03   p_joint 4.903846e-05

Joint ci ratio: 5.435925e-01	ci left: 3.616483e-05	ci right 6.386197e-05	k: 51	n:1050000
Cons ci ratio: 8.871080e-02	ci left: 1.773829e-03	ci right 1.939414e-03	k: 1948	n:1050000
KS ci ratio: 9.544788e-02	ci left: 1.527243e-03	ci right 1.681242e-03	k: 1683	n:1050000
PCBP1   1050000 perm   566 sec   (1854 perm/sec)   p_kst 1.602857e-03   p_cons 1.855238e-03   p_joint 4.857143e-05

Joint ci ratio: 5.435926e-01	ci left: 3.582365e-05	ci right 6.325950e-05	k: 51	n:1060000
Cons ci ratio: 8.834901e-02	ci left: 1.771855e-03	ci right 1.936546e-03	k: 1964	n:1060000
KS ci ratio: 9.494173e-02	ci left: 1.529412e-03	ci right 1.682766e-03	k: 1701	n:1060000
PCBP1   1060000 perm   576 sec   (1842 perm/sec)   p_kst 1.604717e-03   p_cons 1.852830e-03   p_joint 4.811321e-05

Joint ci ratio: 5.384398e-01	ci left: 3.629561e-05	ci right 6.372950e-05	k: 52	n:1070000
Cons ci ratio: 8.792493e-02	ci left: 1.772661e-03	ci right 1.936596e-03	k: 1983	n:1070000
KS ci ratio: 9.447106e-02	ci left: 1.530630e-03	ci right 1.683303e-03	k: 1718	n:1070000
PCBP1   1070000 perm   585 sec   (1829 perm/sec)   p_kst 1.605607e-03   p_cons 1.853271e-03   p_joint 4.859813e-05

Joint ci ratio: 5.334308e-01	ci left: 3.676006e-05	ci right 6.418961e-05	k: 53	n:1080000
Cons ci ratio: 8.752879e-02	ci left: 1.772549e-03	ci right 1.935697e-03	k: 2001	n:1080000
KS ci ratio: 9.398021e-02	ci left: 1.532731e-03	ci right 1.684776e-03	k: 1736	n:1080000
PCBP1   1080000 perm   594 sec   (1818 perm/sec)   p_kst 1.607407e-03   p_cons 1.852778e-03   p_joint 4.907407e-05

Joint ci ratio: 5.334310e-01	ci left: 3.642281e-05	ci right 6.360072e-05	k: 53	n:1090000
Cons ci ratio: 8.711636e-02	ci left: 1.773338e-03	ci right 1.935750e-03	k: 2020	n:1090000
KS ci ratio: 9.349694e-02	ci left: 1.534796e-03	ci right 1.686220e-03	k: 1754	n:1090000
PCBP1   1090000 perm   603 sec   (1807 perm/sec)   p_kst 1.609174e-03   p_cons 1.853211e-03   p_joint 4.862385e-05

Joint ci ratio: 5.334311e-01	ci left: 3.609169e-05	ci right 6.302254e-05	k: 53	n:1100000
Cons ci ratio: 8.681636e-02	ci left: 1.769667e-03	ci right 1.931156e-03	k: 2034	n:1100000
KS ci ratio: 9.294232e-02	ci left: 1.539490e-03	ci right 1.690427e-03	k: 1775	n:1100000
PCBP1   1100000 perm   613 sec   (1796 perm/sec)   p_kst 1.613636e-03   p_cons 1.849091e-03   p_joint 4.818182e-05

Joint ci ratio: 5.435932e-01	ci left: 3.420996e-05	ci right 6.041000e-05	k: 51	n:1110000
Cons ci ratio: 8.641387e-02	ci left: 1.770470e-03	ci right 1.931246e-03	k: 2053	n:1110000
KS ci ratio: 9.263008e-02	ci left: 1.536180e-03	ci right 1.686260e-03	k: 1787	n:1110000
PCBP1   1110000 perm   622 sec   (1785 perm/sec)   p_kst 1.609910e-03   p_cons 1.849550e-03   p_joint 4.594595e-05

Joint ci ratio: 5.384404e-01	ci left: 3.467527e-05	ci right 6.088445e-05	k: 52	n:1120000
Cons ci ratio: 8.593391e-02	ci left: 1.774756e-03	ci right 1.934981e-03	k: 2076	n:1120000
KS ci ratio: 9.232097e-02	ci left: 1.532931e-03	ci right 1.682166e-03	k: 1799	n:1120000
PCBP1   1120000 perm   632 sec   (1773 perm/sec)   p_kst 1.606250e-03   p_cons 1.853571e-03   p_joint 4.642857e-05

Joint ci ratio: 5.384405e-01	ci left: 3.436840e-05	ci right 6.034566e-05	k: 52	n:1130000
Cons ci ratio: 8.558443e-02	ci left: 1.773771e-03	ci right 1.933224e-03	k: 2093	n:1130000
KS ci ratio: 9.201493e-02	ci left: 1.529739e-03	ci right 1.678144e-03	k: 1811	n:1130000
PCBP1   1130000 perm   641 sec   (1762 perm/sec)   p_kst 1.602655e-03   p_cons 1.852212e-03   p_joint 4.601770e-05

Joint ci ratio: 5.384407e-01	ci left: 3.406692e-05	ci right 5.981631e-05	k: 52	n:1140000
Cons ci ratio: 8.532021e-02	ci left: 1.769372e-03	ci right 1.927913e-03	k: 2106	n:1140000
KS ci ratio: 9.176231e-02	ci left: 1.524891e-03	ci right 1.672397e-03	k: 1821	n:1140000
PCBP1   1140000 perm   651 sec   (1751 perm/sec)   p_kst 1.597368e-03   p_cons 1.847368e-03   p_joint 4.561404e-05

Joint ci ratio: 5.384408e-01	ci left: 3.377069e-05	ci right 5.929618e-05	k: 52	n:1150000
Cons ci ratio: 8.499818e-02	ci left: 1.767603e-03	ci right 1.925358e-03	k: 2122	n:1150000
KS ci ratio: 9.151177e-02	ci left: 1.520127e-03	ci right 1.666749e-03	k: 1831	n:1150000
PCBP1   1150000 perm   661 sec   (1739 perm/sec)   p_kst 1.592174e-03   p_cons 1.845217e-03   p_joint 4.521739e-05

Joint ci ratio: 5.334318e-01	ci left: 3.422487e-05	ci right 5.976277e-05	k: 53	n:1160000
Cons ci ratio: 8.471947e-02	ci left: 1.764177e-03	ci right 1.921085e-03	k: 2136	n:1160000
KS ci ratio: 9.111475e-02	ci left: 1.520501e-03	ci right 1.666489e-03	k: 1847	n:1160000
PCBP1   1160000 perm   671 sec   (1729 perm/sec)   p_kst 1.592241e-03   p_cons 1.841379e-03   p_joint 4.568966e-05

Joint ci ratio: 5.285600e-01	ci left: 3.467237e-05	ci right 6.022033e-05	k: 54	n:1170000
Cons ci ratio: 8.442382e-02	ci left: 1.761648e-03	ci right 1.917758e-03	k: 2151	n:1170000
KS ci ratio: 9.089396e-02	ci left: 1.515022e-03	ci right 1.660113e-03	k: 1856	n:1170000
PCBP1   1170000 perm   681 sec   (1718 perm/sec)   p_kst 1.586325e-03   p_cons 1.838462e-03   p_joint 4.615385e-05

Joint ci ratio: 4.899865e-01	ci left: 4.102645e-05	ci right 6.830828e-05	k: 63	n:1180000
Cons ci ratio: 9.899235e-02	ci left: 1.261409e-03	ci right 1.393600e-03	k: 1565	n:1180000
KS ci ratio: 9.067476e-02	ci left: 1.509637e-03	ci right 1.653844e-03	k: 1865	n:1180000
PCBP1   1180000 perm   691 sec   (1708 perm/sec)   p_kst 1.580508e-03   p_cons 1.326271e-03   p_joint 5.338983e-05

Joint ci ratio: 4.825051e-01	ci left: 4.215623e-05	ci right 6.961951e-05	k: 65	n:1190000
Cons ci ratio: 9.858401e-02	ci left: 1.261464e-03	ci right 1.393084e-03	k: 1578	n:1190000
KS ci ratio: 9.026447e-02	ci left: 1.510913e-03	ci right 1.654555e-03	k: 1882	n:1190000
PCBP1   1190000 perm   701 sec   (1698 perm/sec)   p_kst 1.581513e-03   p_cons 1.326050e-03   p_joint 5.462185e-05

Joint ci ratio: 4.825052e-01	ci left: 4.180493e-05	ci right 6.903935e-05	k: 65	n:1200000
Cons ci ratio: 9.821158e-02	ci left: 1.260705e-03	ci right 1.391721e-03	k: 1590	n:1200000
KS ci ratio: 8.997836e-02	ci left: 1.508097e-03	ci right 1.650993e-03	k: 1894	n:1200000
PCBP1   1200000 perm   711 sec   (1688 perm/sec)   p_kst 1.578333e-03   p_cons 1.325000e-03   p_joint 5.416667e-05

Joint ci ratio: 2.313627e-01	ci left: 2.097639e-04	ci right 2.654017e-04	k: 286	n:1210000
Cons ci ratio: 9.784334e-02	ci left: 1.259960e-03	ci right 1.390379e-03	k: 1602	n:1210000
KS ci ratio: 9.028967e-02	ci left: 1.485131e-03	ci right 1.626363e-03	k: 1881	n:1210000
PCBP1   1210000 perm   721 sec   (1678 perm/sec)   p_kst 1.554545e-03   p_cons 1.323967e-03   p_joint 2.363636e-04

Joint ci ratio: 2.297670e-01	ci left: 2.111339e-04	ci right 2.666939e-04	k: 290	n:1220000
Cons ci ratio: 9.753970e-02	ci left: 1.257629e-03	ci right 1.387380e-03	k: 1612	n:1220000
KS ci ratio: 8.981354e-02	ci left: 1.488982e-03	ci right 1.629795e-03	k: 1901	n:1220000
PCBP1   1220000 perm   731 sec   (1668 perm/sec)   p_kst 1.558197e-03   p_cons 1.321311e-03   p_joint 2.377049e-04

Joint ci ratio: 2.289815e-01	ci left: 2.109499e-04	ci right 2.662450e-04	k: 292	n:1230000
Cons ci ratio: 9.717894e-02	ci left: 1.256923e-03	ci right 1.386094e-03	k: 1624	n:1230000
KS ci ratio: 8.948487e-02	ci left: 1.488003e-03	ci right 1.628182e-03	k: 1915	n:1230000
PCBP1   1230000 perm   742 sec   (1659 perm/sec)   p_kst 1.556911e-03   p_cons 1.320325e-03   p_joint 2.373984e-04

Joint ci ratio: 2.282040e-01	ci left: 2.107693e-04	ci right 2.658030e-04	k: 294	n:1240000
Cons ci ratio: 9.691110e-02	ci left: 1.253868e-03	ci right 1.382350e-03	k: 1633	n:1240000
KS ci ratio: 8.915978e-02	ci left: 1.487041e-03	ci right 1.626594e-03	k: 1929	n:1240000
PCBP1   1240000 perm   752 sec   (1649 perm/sec)   p_kst 1.555645e-03   p_cons 1.316935e-03   p_joint 2.370968e-04

Joint ci ratio: 2.274344e-01	ci left: 2.105918e-04	ci right 2.653677e-04	k: 296	n:1250000
Cons ci ratio: 9.667493e-02	ci left: 1.250082e-03	ci right 1.377846e-03	k: 1641	n:1250000
KS ci ratio: 8.888401e-02	ci left: 1.484531e-03	ci right 1.623395e-03	k: 1941	n:1250000
PCBP1   1250000 perm   763 sec   (1639 perm/sec)   p_kst 1.552800e-03   p_cons 1.312800e-03   p_joint 2.368000e-04

Joint ci ratio: 2.255435e-01	ci left: 2.126636e-04	ci right 2.674546e-04	k: 301	n:1260000
Cons ci ratio: 9.629450e-02	ci left: 1.250230e-03	ci right 1.377477e-03	k: 1654	n:1260000
KS ci ratio: 8.849746e-02	ci left: 1.485942e-03	ci right 1.624302e-03	k: 1958	n:1260000
PCBP1   1260000 perm   773 sec   (1630 perm/sec)   p_kst 1.553968e-03   p_cons 1.312698e-03   p_joint 2.388889e-04

Joint ci ratio: 4.587879e-01	ci left: 4.435897e-05	ci right 7.139482e-05	k: 72	n:1270000
Cons ci ratio: 9.597616e-02	ci left: 1.248838e-03	ci right 1.375501e-03	k: 1665	n:1270000
KS ci ratio: 8.890803e-02	ci left: 1.460382e-03	ci right 1.597026e-03	k: 1940	n:1270000
PCBP1   1270000 perm   784 sec   (1621 perm/sec)   p_kst 1.527559e-03   p_cons 1.311024e-03   p_joint 5.669291e-05

Joint ci ratio: 4.587880e-01	ci left: 4.401241e-05	ci right 7.083705e-05	k: 72	n:1280000
Cons ci ratio: 9.549005e-02	ci left: 1.252045e-03	ci right 1.378353e-03	k: 1682	n:1280000
KS ci ratio: 8.849854e-02	ci left: 1.462723e-03	ci right 1.598923e-03	k: 1958	n:1280000
PCBP1   1280000 perm   794 sec   (1611 perm/sec)   p_kst 1.529688e-03   p_cons 1.314062e-03   p_joint 5.625000e-05

Joint ci ratio: 4.526293e-01	ci left: 4.504361e-05	ci right 7.201515e-05	k: 74	n:1290000
Cons ci ratio: 9.512339e-02	ci left: 1.252177e-03	ci right 1.377986e-03	k: 1695	n:1290000
KS ci ratio: 8.829616e-02	ci left: 1.458207e-03	ci right 1.593659e-03	k: 1967	n:1290000
PCBP1   1290000 perm   805 sec   (1602 perm/sec)   p_kst 1.524806e-03   p_cons 1.313953e-03   p_joint 5.736434e-05

Joint ci ratio: 4.526294e-01	ci left: 4.469711e-05	ci right 7.146119e-05	k: 74	n:1300000
Cons ci ratio: 9.465006e-02	ci left: 1.255311e-03	ci right 1.380773e-03	k: 1712	n:1300000
KS ci ratio: 8.796159e-02	ci left: 1.458274e-03	ci right 1.593193e-03	k: 1982	n:1300000
PCBP1   1300000 perm   816 sec   (1592 perm/sec)   p_kst 1.524615e-03   p_cons 1.316923e-03   p_joint 5.692308e-05

Joint ci ratio: 4.496416e-01	ci left: 4.503252e-05	ci right 7.176524e-05	k: 75	n:1310000
Cons ci ratio: 9.415649e-02	ci left: 1.259145e-03	ci right 1.384298e-03	k: 1730	n:1310000
KS ci ratio: 8.754307e-02	ci left: 1.461328e-03	ci right 1.595853e-03	k: 2001	n:1310000
PCBP1   1310000 perm   827 sec   (1583 perm/sec)   p_kst 1.527481e-03   p_cons 1.320611e-03   p_joint 5.725191e-05

Joint ci ratio: 4.438393e-01	ci left: 4.603602e-05	ci right 7.290613e-05	k: 77	n:1320000
Cons ci ratio: 9.364375e-02	ci left: 1.263662e-03	ci right 1.388542e-03	k: 1749	n:1320000
KS ci ratio: 8.721695e-02	ci left: 1.461372e-03	ci right 1.595375e-03	k: 2016	n:1320000
PCBP1   1320000 perm   838 sec   (1575 perm/sec)   p_kst 1.527273e-03   p_cons 1.325000e-03   p_joint 5.833333e-05

Joint ci ratio: 4.438394e-01	ci left: 4.568988e-05	ci right 7.235796e-05	k: 77	n:1330000
Cons ci ratio: 9.324492e-02	ci left: 1.265176e-03	ci right 1.389644e-03	k: 1764	n:1330000
KS ci ratio: 8.685165e-02	ci left: 1.462889e-03	ci right 1.596440e-03	k: 2033	n:1330000
PCBP1   1330000 perm   849 sec   (1566 perm/sec)   p_kst 1.528571e-03   p_cons 1.326316e-03   p_joint 5.789474e-05

Joint ci ratio: 4.438395e-01	ci left: 4.534891e-05	ci right 7.181798e-05	k: 77	n:1340000
Cons ci ratio: 9.287727e-02	ci left: 1.265939e-03	ci right 1.389964e-03	k: 1778	n:1340000
KS ci ratio: 8.640656e-02	ci left: 1.467304e-03	ci right 1.600537e-03	k: 2054	n:1340000
PCBP1   1340000 perm   860 sec   (1558 perm/sec)   p_kst 1.532836e-03   p_cons 1.326866e-03   p_joint 5.746269e-05

Joint ci ratio: 4.467126e-01	ci left: 4.435533e-05	ci right 7.046271e-05	k: 76	n:1350000
Cons ci ratio: 9.225668e-02	ci left: 1.273928e-03	ci right 1.397857e-03	k: 1802	n:1350000
KS ci ratio: 8.611377e-02	ci left: 1.466581e-03	ci right 1.599275e-03	k: 2068	n:1350000
PCBP1   1350000 perm   871 sec   (1549 perm/sec)   p_kst 1.531852e-03   p_cons 1.334815e-03   p_joint 5.629630e-05

Joint ci ratio: 4.438397e-01	ci left: 4.468201e-05	ci right 7.076184e-05	k: 77	n:1360000
Cons ci ratio: 9.205287e-02	ci left: 1.270307e-03	ci right 1.393597e-03	k: 1810	n:1360000
KS ci ratio: 8.582394e-02	ci left: 1.465871e-03	ci right 1.598032e-03	k: 2082	n:1360000
PCBP1   1360000 perm   883 sec   (1541 perm/sec)   p_kst 1.530882e-03   p_cons 1.330882e-03   p_joint 5.661765e-05

Joint ci ratio: 4.410216e-01	ci left: 4.500446e-05	ci right 7.105609e-05	k: 78	n:1370000
Cons ci ratio: 9.172425e-02	ci left: 1.270306e-03	ci right 1.393132e-03	k: 1823	n:1370000
KS ci ratio: 8.549619e-02	ci left: 1.466599e-03	ci right 1.598296e-03	k: 2098	n:1370000
PCBP1   1370000 perm   894 sec   (1532 perm/sec)   p_kst 1.531387e-03   p_cons 1.330657e-03   p_joint 5.693431e-05

Joint ci ratio: 4.467128e-01	ci left: 4.339108e-05	ci right 6.893092e-05	k: 76	n:1380000
Cons ci ratio: 9.134935e-02	ci left: 1.271722e-03	ci right 1.394155e-03	k: 1838	n:1380000
KS ci ratio: 8.531368e-02	ci left: 1.462354e-03	ci right 1.593375e-03	k: 2107	n:1380000
PCBP1   1380000 perm   906 sec   (1524 perm/sec)   p_kst 1.526812e-03   p_cons 1.331884e-03   p_joint 5.507246e-05

Joint ci ratio: 4.467129e-01	ci left: 4.307891e-05	ci right 6.843502e-05	k: 76	n:1390000
Cons ci ratio: 9.102819e-02	ci left: 1.271712e-03	ci right 1.393690e-03	k: 1851	n:1390000
KS ci ratio: 8.515247e-02	ci left: 1.457466e-03	ci right 1.587790e-03	k: 2115	n:1390000
PCBP1   1390000 perm   917 sec   (1515 perm/sec)   p_kst 1.521583e-03   p_cons 1.331655e-03   p_joint 5.467626e-05

Joint ci ratio: 4.438401e-01	ci left: 4.340538e-05	ci right 6.874009e-05	k: 77	n:1400000
Cons ci ratio: 9.097945e-02	ci left: 1.264024e-03	ci right 1.385197e-03	k: 1853	n:1400000
KS ci ratio: 8.477261e-02	ci left: 1.460339e-03	ci right 1.590309e-03	k: 2134	n:1400000
PCBP1   1400000 perm   929 sec   (1507 perm/sec)   p_kst 1.524286e-03   p_cons 1.323571e-03   p_joint 5.500000e-05

Joint ci ratio: 4.410219e-01	ci left: 4.372773e-05	ci right 6.904033e-05	k: 78	n:1410000
Cons ci ratio: 9.051663e-02	ci left: 1.268229e-03	ci right 1.389154e-03	k: 1872	n:1410000
KS ci ratio: 8.457494e-02	ci left: 1.456924e-03	ci right 1.586272e-03	k: 2144	n:1410000
PCBP1   1410000 perm   941 sec   (1499 perm/sec)   p_kst 1.520567e-03   p_cons 1.327660e-03   p_joint 5.531915e-05

Joint ci ratio: 4.410220e-01	ci left: 4.341979e-05	ci right 6.855413e-05	k: 78	n:1420000
Cons ci ratio: 9.018020e-02	ci left: 1.268934e-03	ci right 1.389453e-03	k: 1886	n:1420000
KS ci ratio: 8.430031e-02	ci left: 1.456315e-03	ci right 1.585169e-03	k: 2158	n:1420000
PCBP1   1420000 perm   952 sec   (1491 perm/sec)   p_kst 1.519718e-03   p_cons 1.328169e-03   p_joint 5.492958e-05

Joint ci ratio: 4.410221e-01	ci left: 4.311615e-05	ci right 6.807474e-05	k: 78	n:1430000
Cons ci ratio: 8.984750e-02	ci left: 1.269630e-03	ci right 1.389747e-03	k: 1900	n:1430000
KS ci ratio: 8.406710e-02	ci left: 1.454346e-03	ci right 1.582652e-03	k: 2170	n:1430000
PCBP1   1430000 perm   965 sec   (1482 perm/sec)   p_kst 1.517483e-03   p_cons 1.328671e-03   p_joint 5.454545e-05

Joint ci ratio: 4.410222e-01	ci left: 4.281673e-05	ci right 6.760200e-05	k: 78	n:1440000
Cons ci ratio: 8.951845e-02	ci left: 1.270318e-03	ci right 1.390036e-03	k: 1914	n:1440000
KS ci ratio: 8.368239e-02	ci left: 1.457844e-03	ci right 1.585841e-03	k: 2190	n:1440000
PCBP1   1440000 perm   976 sec   (1475 perm/sec)   p_kst 1.520833e-03   p_cons 1.329167e-03   p_joint 5.416667e-05

Joint ci ratio: 4.382571e-01	ci left: 4.313474e-05	ci right 6.790132e-05	k: 79	n:1450000
Cons ci ratio: 8.921615e-02	ci left: 1.270322e-03	ci right 1.389615e-03	k: 1927	n:1450000
KS ci ratio: 8.345426e-02	ci left: 1.455892e-03	ci right 1.583353e-03	k: 2202	n:1450000
PCBP1   1450000 perm   988 sec   (1467 perm/sec)   p_kst 1.518621e-03   p_cons 1.328966e-03   p_joint 5.448276e-05

Joint ci ratio: 4.355433e-01	ci left: 4.344888e-05	ci right 6.819607e-05	k: 80	n:1460000
Cons ci ratio: 8.898578e-02	ci left: 1.268318e-03	ci right 1.387099e-03	k: 1937	n:1460000
KS ci ratio: 8.320917e-02	ci left: 1.454639e-03	ci right 1.581598e-03	k: 2215	n:1460000
PCBP1   1460000 perm   1000 sec   (1460 perm/sec)   p_kst 1.517123e-03   p_cons 1.326712e-03   p_joint 5.479452e-05

Joint ci ratio: 4.410225e-01	ci left: 4.194291e-05	ci right 6.622237e-05	k: 78	n:1470000
Cons ci ratio: 8.859793e-02	ci left: 1.270998e-03	ci right 1.389484e-03	k: 1954	n:1470000
KS ci ratio: 8.292898e-02	ci left: 1.454736e-03	ci right 1.581255e-03	k: 2230	n:1470000
PCBP1   1470000 perm   1012 sec   (1452 perm/sec)   p_kst 1.517007e-03   p_cons 1.329252e-03   p_joint 5.306122e-05

Joint ci ratio: 4.467137e-01	ci left: 4.045923e-05	ci right 6.427346e-05	k: 76	n:1480000
Cons ci ratio: 8.837230e-02	ci left: 1.269017e-03	ci right 1.387002e-03	k: 1964	n:1480000
KS ci ratio: 8.274389e-02	ci left: 1.451523e-03	ci right 1.577467e-03	k: 2240	n:1480000
PCBP1   1480000 perm   1024 sec   (1445 perm/sec)   p_kst 1.513514e-03   p_cons 1.327027e-03   p_joint 5.135135e-05

Joint ci ratio: 4.467138e-01	ci left: 4.018769e-05	ci right 6.384210e-05	k: 76	n:1490000
Cons ci ratio: 8.808142e-02	ci left: 1.269032e-03	ci right 1.386611e-03	k: 1977	n:1490000
KS ci ratio: 8.245006e-02	ci left: 1.452298e-03	ci right 1.577840e-03	k: 2256	n:1490000
PCBP1   1490000 perm   1037 sec   (1437 perm/sec)   p_kst 1.514094e-03   p_cons 1.326846e-03   p_joint 5.100671e-05

Joint ci ratio: 4.467138e-01	ci left: 3.991977e-05	ci right 6.341648e-05	k: 76	n:1500000
Cons ci ratio: 8.790399e-02	ci left: 1.265788e-03	ci right 1.382818e-03	k: 1985	n:1500000
KS ci ratio: 8.219556e-02	ci left: 1.451757e-03	ci right 1.576847e-03	k: 2270	n:1500000
PCBP1   1500000 perm   1049 sec   (1430 perm/sec)   p_kst 1.513333e-03   p_cons 1.323333e-03   p_joint 5.066667e-05

Joint ci ratio: 4.438410e-01	ci left: 4.024338e-05	ci right 6.373257e-05	k: 77	n:1510000
Cons ci ratio: 8.770561e-02	ci left: 1.263235e-03	ci right 1.379751e-03	k: 1994	n:1510000
KS ci ratio: 8.187166e-02	ci left: 1.453819e-03	ci right 1.578569e-03	k: 2288	n:1510000
PCBP1   1510000 perm   1062 sec   (1422 perm/sec)   p_kst 1.515232e-03   p_cons 1.320530e-03   p_joint 5.099338e-05

Joint ci ratio: 4.438411e-01	ci left: 3.997862e-05	ci right 6.331328e-05	k: 77	n:1520000
Cons ci ratio: 8.746488e-02	ci left: 1.262002e-03	ci right 1.378069e-03	k: 2005	n:1520000
KS ci ratio: 8.155156e-02	ci left: 1.455854e-03	ci right 1.580268e-03	k: 2306	n:1520000
PCBP1   1520000 perm   1074 sec   (1415 perm/sec)   p_kst 1.517105e-03   p_cons 1.319079e-03   p_joint 5.065789e-05

Joint ci ratio: 4.410229e-01	ci left: 4.029809e-05	ci right 6.362543e-05	k: 78	n:1530000
Cons ci ratio: 8.713964e-02	ci left: 1.263344e-03	ci right 1.379080e-03	k: 2020	n:1530000
KS ci ratio: 8.130527e-02	ci left: 1.455303e-03	ci right 1.579276e-03	k: 2320	n:1530000
PCBP1   1530000 perm   1087 sec   (1408 perm/sec)   p_kst 1.516340e-03   p_cons 1.320261e-03   p_joint 5.098039e-05

Joint ci ratio: 4.410230e-01	ci left: 4.003641e-05	ci right 6.321228e-05	k: 78	n:1540000
Cons ci ratio: 8.688212e-02	ci left: 1.262763e-03	ci right 1.378087e-03	k: 2032	n:1540000
KS ci ratio: 8.100909e-02	ci left: 1.456668e-03	ci right 1.580284e-03	k: 2337	n:1540000
PCBP1   1540000 perm   1099 sec   (1401 perm/sec)   p_kst 1.517532e-03   p_cons 1.319481e-03   p_joint 5.064935e-05

Joint ci ratio: 4.382579e-01	ci left: 4.035184e-05	ci right 6.352061e-05	k: 79	n:1550000
Cons ci ratio: 8.654215e-02	ci left: 1.264715e-03	ci right 1.379742e-03	k: 2048	n:1550000
KS ci ratio: 8.071612e-02	ci left: 1.458016e-03	ci right 1.581278e-03	k: 2354	n:1550000
PCBP1   1550000 perm   1112 sec   (1394 perm/sec)   p_kst 1.518710e-03   p_cons 1.321290e-03   p_joint 5.096774e-05

Joint ci ratio: 4.382579e-01	ci left: 4.009318e-05	ci right 6.311343e-05	k: 79	n:1560000
Cons ci ratio: 8.626892e-02	ci left: 1.264761e-03	ci right 1.379411e-03	k: 2061	n:1560000
KS ci ratio: 8.044330e-02	ci left: 1.458720e-03	ci right 1.581604e-03	k: 2370	n:1560000
PCBP1   1560000 perm   1125 sec   (1386 perm/sec)   p_kst 1.519231e-03   p_cons 1.321154e-03   p_joint 5.064103e-05

Joint ci ratio: 4.410232e-01	ci left: 3.927138e-05	ci right 6.200441e-05	k: 78	n:1570000
Cons ci ratio: 8.612304e-02	ci left: 1.261068e-03	ci right 1.375180e-03	k: 2068	n:1570000
KS ci ratio: 8.000555e-02	ci left: 1.465657e-03	ci right 1.588423e-03	k: 2396	n:1570000
PCBP1   1570000 perm   1138 sec   (1379 perm/sec)   p_kst 1.526115e-03   p_cons 1.317197e-03   p_joint 4.968153e-05

Joint ci ratio: 4.438415e-01	ci left: 3.846044e-05	ci right 6.090899e-05	k: 77	n:1580000
Cons ci ratio: 8.589506e-02	ci left: 1.259898e-03	ci right 1.373588e-03	k: 2079	n:1580000
KS ci ratio: 7.973984e-02	ci left: 1.466305e-03	ci right 1.588698e-03	k: 2412	n:1580000
PCBP1   1580000 perm   1151 sec   (1373 perm/sec)   p_kst 1.526582e-03   p_cons 1.315823e-03   p_joint 4.873418e-05

Joint ci ratio: 4.438416e-01	ci left: 3.821855e-05	ci right 6.052592e-05	k: 77	n:1590000
Cons ci ratio: 8.573050e-02	ci left: 1.256898e-03	ci right 1.370088e-03	k: 2087	n:1590000
KS ci ratio: 7.950956e-02	ci left: 1.465713e-03	ci right 1.587687e-03	k: 2426	n:1590000
PCBP1   1590000 perm   1164 sec   (1366 perm/sec)   p_kst 1.525786e-03   p_cons 1.312579e-03   p_joint 4.842767e-05

Joint ci ratio: 4.438416e-01	ci left: 3.797968e-05	ci right 6.014763e-05	k: 77	n:1600000
Cons ci ratio: 8.540383e-02	ci left: 1.258828e-03	ci right 1.371739e-03	k: 2103	n:1600000
KS ci ratio: 7.921628e-02	ci left: 1.467579e-03	ci right 1.589237e-03	k: 2444	n:1600000
PCBP1   1600000 perm   1177 sec   (1359 perm/sec)   p_kst 1.527500e-03   p_cons 1.314375e-03   p_joint 4.812500e-05

Joint ci ratio: 4.382583e-01	ci left: 3.884804e-05	ci right 6.115340e-05	k: 79	n:1610000
Cons ci ratio: 8.500060e-02	ci left: 1.263167e-03	ci right 1.375906e-03	k: 2123	n:1610000
KS ci ratio: 7.894227e-02	ci left: 1.468814e-03	ci right 1.590134e-03	k: 2461	n:1610000
PCBP1   1610000 perm   1190 sec   (1352 perm/sec)   p_kst 1.528571e-03   p_cons 1.318634e-03   p_joint 4.906832e-05

Joint ci ratio: 4.685193e-01	ci left: 3.313973e-05	ci right 5.390335e-05	k: 69	n:1620000
Cons ci ratio: 8.474167e-02	ci left: 1.263224e-03	ci right 1.375608e-03	k: 2136	n:1620000
KS ci ratio: 7.881450e-02	ci left: 1.464588e-03	ci right 1.585354e-03	k: 2469	n:1620000
PCBP1   1620000 perm   1204 sec   (1346 perm/sec)   p_kst 1.524074e-03   p_cons 1.318519e-03   p_joint 4.259259e-05

Joint ci ratio: 4.652081e-01	ci left: 3.347772e-05	ci right 5.425785e-05	k: 70	n:1630000
Cons ci ratio: 8.450477e-02	ci left: 1.262681e-03	ci right 1.374686e-03	k: 2148	n:1630000
KS ci ratio: 7.833983e-02	ci left: 1.473646e-03	ci right 1.594394e-03	k: 2499	n:1630000
PCBP1   1630000 perm   1217 sec   (1339 perm/sec)   p_kst 1.533129e-03   p_cons 1.317791e-03   p_joint 4.294479e-05

Joint ci ratio: 4.652082e-01	ci left: 3.327358e-05	ci right 5.392701e-05	k: 70	n:1640000
Cons ci ratio: 8.417240e-02	ci left: 1.265129e-03	ci right 1.376888e-03	k: 2165	n:1640000
KS ci ratio: 7.812143e-02	ci left: 1.473030e-03	ci right 1.593376e-03	k: 2513	n:1640000
PCBP1   1640000 perm   1231 sec   (1333 perm/sec)   p_kst 1.532317e-03   p_cons 1.320122e-03   p_joint 4.268293e-05

Joint ci ratio: 4.652083e-01	ci left: 3.307192e-05	ci right 5.360018e-05	k: 70	n:1650000
Cons ci ratio: 8.395954e-02	ci left: 1.263988e-03	ci right 1.375350e-03	k: 2176	n:1650000
KS ci ratio: 7.792028e-02	ci left: 1.471827e-03	ci right 1.591751e-03	k: 2526	n:1650000
PCBP1   1650000 perm   1244 sec   (1326 perm/sec)   p_kst 1.530909e-03   p_cons 1.318788e-03   p_joint 4.242424e-05

Joint ci ratio: 4.652083e-01	ci left: 3.287269e-05	ci right 5.327729e-05	k: 70	n:1660000
Cons ci ratio: 8.344333e-02	ci left: 1.272298e-03	ci right 1.383670e-03	k: 2203	n:1660000
KS ci ratio: 7.769005e-02	ci left: 1.471821e-03	ci right 1.591374e-03	k: 2541	n:1660000
PCBP1   1660000 perm   1258 sec   (1320 perm/sec)   p_kst 1.530723e-03   p_cons 1.327108e-03   p_joint 4.216867e-05

Joint ci ratio: 4.652084e-01	ci left: 3.267585e-05	ci right 5.295826e-05	k: 70	n:1670000
Cons ci ratio: 8.310455e-02	ci left: 1.275234e-03	ci right 1.386387e-03	k: 2221	n:1670000
KS ci ratio: 7.746184e-02	ci left: 1.471816e-03	ci right 1.591001e-03	k: 2556	n:1670000
PCBP1   1670000 perm   1272 sec   (1313 perm/sec)   p_kst 1.530539e-03   p_cons 1.329940e-03   p_joint 4.191617e-05

Joint ci ratio: 4.619664e-01	ci left: 3.300704e-05	ci right 5.330735e-05	k: 71	n:1680000
Cons ci ratio: 8.286251e-02	ci left: 1.275221e-03	ci right 1.386034e-03	k: 2234	n:1680000
KS ci ratio: 7.735622e-02	ci left: 1.467141e-03	ci right 1.585779e-03	k: 2563	n:1680000
PCBP1   1680000 perm   1285 sec   (1307 perm/sec)   p_kst 1.525595e-03   p_cons 1.329762e-03   p_joint 4.226190e-05

Joint ci ratio: 4.587913e-01	ci left: 3.333480e-05	ci right 5.365182e-05	k: 72	n:1690000
Cons ci ratio: 8.260418e-02	ci left: 1.275788e-03	ci right 1.386288e-03	k: 2248	n:1690000
KS ci ratio: 7.719092e-02	ci left: 1.464843e-03	ci right 1.583030e-03	k: 2574	n:1690000
PCBP1   1690000 perm   1299 sec   (1301 perm/sec)   p_kst 1.523077e-03   p_cons 1.330178e-03   p_joint 4.260355e-05

Joint ci ratio: 4.556807e-01	ci left: 3.365917e-05	ci right 5.399178e-05	k: 73	n:1700000
Cons ci ratio: 8.242123e-02	ci left: 1.274044e-03	ci right 1.384137e-03	k: 2258	n:1700000
KS ci ratio: 7.692247e-02	ci left: 1.466610e-03	ci right 1.584510e-03	k: 2592	n:1700000
PCBP1   1700000 perm   1313 sec   (1295 perm/sec)   p_kst 1.524706e-03   p_cons 1.328235e-03   p_joint 4.294118e-05

Joint ci ratio: 4.556808e-01	ci left: 3.346234e-05	ci right 5.367604e-05	k: 73	n:1710000
Cons ci ratio: 8.213082e-02	ci left: 1.275758e-03	ci right 1.385592e-03	k: 2274	n:1710000
KS ci ratio: 7.675992e-02	ci left: 1.464343e-03	ci right 1.581801e-03	k: 2603	n:1710000
PCBP1   1710000 perm   1327 sec   (1289 perm/sec)   p_kst 1.522222e-03   p_cons 1.329825e-03   p_joint 4.269006e-05

Joint ci ratio: 4.556808e-01	ci left: 3.326779e-05	ci right 5.336398e-05	k: 73	n:1720000
Cons ci ratio: 8.187925e-02	ci left: 1.276313e-03	ci right 1.385842e-03	k: 2288	n:1720000
KS ci ratio: 7.653980e-02	ci left: 1.464383e-03	ci right 1.581492e-03	k: 2618	n:1720000
PCBP1   1720000 perm   1341 sec   (1283 perm/sec)   p_kst 1.522093e-03   p_cons 1.330233e-03   p_joint 4.244186e-05

Joint ci ratio: 4.556809e-01	ci left: 3.307549e-05	ci right 5.305552e-05	k: 73	n:1730000
Cons ci ratio: 8.168327e-02	ci left: 1.275164e-03	ci right 1.384320e-03	k: 2299	n:1730000
KS ci ratio: 7.623464e-02	ci left: 1.467825e-03	ci right 1.584721e-03	k: 2639	n:1730000
PCBP1   1730000 perm   1355 sec   (1277 perm/sec)   p_kst 1.525434e-03   p_cons 1.328902e-03   p_joint 4.219653e-05

Joint ci ratio: 4.526327e-01	ci left: 3.339435e-05	ci right 5.339064e-05	k: 74	n:1740000
Cons ci ratio: 8.145341e-02	ci left: 1.275154e-03	ci right 1.383988e-03	k: 2312	n:1740000
KS ci ratio: 7.600466e-02	ci left: 1.468410e-03	ci right 1.584984e-03	k: 2655	n:1740000
PCBP1   1740000 perm   1369 sec   (1271 perm/sec)   p_kst 1.525862e-03   p_cons 1.328736e-03   p_joint 4.252874e-05

Joint ci ratio: 4.526328e-01	ci left: 3.320352e-05	ci right 5.308556e-05	k: 74	n:1750000
Cons ci ratio: 8.119053e-02	ci left: 1.276265e-03	ci right 1.384825e-03	k: 2327	n:1750000
KS ci ratio: 7.580516e-02	ci left: 1.467867e-03	ci right 1.584078e-03	k: 2669	n:1750000
PCBP1   1750000 perm   1383 sec   (1265 perm/sec)   p_kst 1.525143e-03   p_cons 1.329714e-03   p_joint 4.228571e-05

Joint ci ratio: 4.467156e-01	ci left: 3.402251e-05	ci right 5.404819e-05	k: 76	n:1760000
Cons ci ratio: 8.096479e-02	ci left: 1.276250e-03	ci right 1.384493e-03	k: 2340	n:1760000
KS ci ratio: 7.559312e-02	ci left: 1.467888e-03	ci right 1.583762e-03	k: 2684	n:1760000
PCBP1   1760000 perm   1397 sec   (1259 perm/sec)   p_kst 1.525000e-03   p_cons 1.329545e-03   p_joint 4.318182e-05

Joint ci ratio: 4.438427e-01	ci left: 3.433190e-05	ci right 5.437077e-05	k: 77	n:1770000
Cons ci ratio: 8.072376e-02	ci left: 1.276789e-03	ci right 1.384740e-03	k: 2354	n:1770000
KS ci ratio: 7.542483e-02	ci left: 1.466247e-03	ci right 1.581722e-03	k: 2696	n:1770000
PCBP1   1770000 perm   1412 sec   (1254 perm/sec)   p_kst 1.523164e-03   p_cons 1.329944e-03   p_joint 4.350282e-05

Joint ci ratio: 2.535466e-01	ci left: 1.172600e-04	ci right 1.518166e-04	k: 238	n:1780000
Cons ci ratio: 8.055299e-02	ci left: 1.275121e-03	ci right 1.382692e-03	k: 2364	n:1780000
KS ci ratio: 7.524375e-02	ci left: 1.465175e-03	ci right 1.580277e-03	k: 2709	n:1780000
PCBP1   1780000 perm   1426 sec   (1248 perm/sec)   p_kst 1.521910e-03   p_cons 1.328090e-03   p_joint 1.337079e-04

Joint ci ratio: 2.530179e-01	ci left: 1.171281e-04	ci right 1.515625e-04	k: 239	n:1790000
Cons ci ratio: 8.040025e-02	ci left: 1.272924e-03	ci right 1.380097e-03	k: 2373	n:1790000
KS ci ratio: 7.509160e-02	ci left: 1.463019e-03	ci right 1.577709e-03	k: 2720	n:1790000
PCBP1   1790000 perm   1440 sec   (1243 perm/sec)   p_kst 1.519553e-03   p_cons 1.325698e-03   p_joint 1.335196e-04

Joint ci ratio: 2.519701e-01	ci left: 1.175182e-04	ci right 1.519018e-04	k: 241	n:1800000
Cons ci ratio: 8.009707e-02	ci left: 1.275651e-03	ci right 1.382630e-03	k: 2391	n:1800000
KS ci ratio: 7.489918e-02	ci left: 1.462523e-03	ci right 1.576868e-03	k: 2734	n:1800000
PCBP1   1800000 perm   1455 sec   (1237 perm/sec)   p_kst 1.518889e-03   p_cons 1.328333e-03   p_joint 1.338889e-04

Joint ci ratio: 2.519702e-01	ci left: 1.168689e-04	ci right 1.510626e-04	k: 241	n:1810000
Cons ci ratio: 7.979728e-02	ci left: 1.278350e-03	ci right 1.385135e-03	k: 2409	n:1810000
KS ci ratio: 7.479003e-02	ci left: 1.458780e-03	ci right 1.572659e-03	k: 2742	n:1810000
PCBP1   1810000 perm   1469 sec   (1232 perm/sec)   p_kst 1.514917e-03   p_cons 1.330939e-03   p_joint 1.331492e-04

Joint ci ratio: 2.514513e-01	ci left: 1.167416e-04	ci right 1.508166e-04	k: 242	n:1820000
Cons ci ratio: 7.953365e-02	ci left: 1.279942e-03	ci right 1.386490e-03	k: 2425	n:1820000
KS ci ratio: 7.465418e-02	ci left: 1.456157e-03	ci right 1.569615e-03	k: 2752	n:1820000
PCBP1   1820000 perm   1483 sec   (1227 perm/sec)   p_kst 1.512088e-03   p_cons 1.332418e-03   p_joint 1.329670e-04

Joint ci ratio: 2.509355e-01	ci left: 1.166157e-04	ci right 1.505732e-04	k: 243	n:1830000
Cons ci ratio: 7.935400e-02	ci left: 1.278839e-03	ci right 1.385044e-03	k: 2436	n:1830000
KS ci ratio: 7.446510e-02	ci left: 1.455707e-03	ci right 1.568831e-03	k: 2766	n:1830000
PCBP1   1830000 perm   1498 sec   (1222 perm/sec)   p_kst 1.511475e-03   p_cons 1.331148e-03   p_joint 1.327869e-04

Joint ci ratio: 2.494068e-01	ci left: 1.175102e-04	ci right 1.514873e-04	k: 246	n:1840000
Cons ci ratio: 7.922418e-02	ci left: 1.276150e-03	ci right 1.381951e-03	k: 2444	n:1840000
KS ci ratio: 7.439812e-02	ci left: 1.450462e-03	ci right 1.563072e-03	k: 2771	n:1840000
PCBP1   1840000 perm   1513 sec   (1216 perm/sec)   p_kst 1.505978e-03   p_cons 1.328261e-03   p_joint 1.336957e-04

Joint ci ratio: 2.489035e-01	ci left: 1.173818e-04	ci right 1.512427e-04	k: 247	n:1850000
Cons ci ratio: 7.907887e-02	ci left: 1.274021e-03	ci right 1.379442e-03	k: 2453	n:1850000
KS ci ratio: 7.413107e-02	ci left: 1.453232e-03	ci right 1.565635e-03	k: 2791	n:1850000
PCBP1   1850000 perm   1528 sec   (1211 perm/sec)   p_kst 1.508649e-03   p_cons 1.325946e-03   p_joint 1.335135e-04

Joint ci ratio: 2.479058e-01	ci left: 1.177590e-04	ci right 1.515717e-04	k: 249	n:1860000
Cons ci ratio: 7.882227e-02	ci left: 1.275604e-03	ci right 1.380798e-03	k: 2469	n:1860000
KS ci ratio: 7.393274e-02	ci left: 1.453334e-03	ci right 1.565431e-03	k: 2806	n:1860000
PCBP1   1860000 perm   1543 sec   (1206 perm/sec)   p_kst 1.508602e-03   p_cons 1.327419e-03   p_joint 1.338710e-04

Joint ci ratio: 2.474115e-01	ci left: 1.176309e-04	ci right 1.513290e-04	k: 250	n:1870000
Cons ci ratio: 7.869504e-02	ci left: 1.272976e-03	ci right 1.377776e-03	k: 2477	n:1870000
KS ci ratio: 7.381462e-02	ci left: 1.450286e-03	ci right 1.561962e-03	k: 2815	n:1870000
PCBP1   1870000 perm   1558 sec   (1200 perm/sec)   p_kst 1.505348e-03   p_cons 1.324599e-03   p_joint 1.336898e-04

Joint ci ratio: 2.474116e-01	ci left: 1.170052e-04	ci right 1.505241e-04	k: 250	n:1880000
Cons ci ratio: 7.844215e-02	ci left: 1.274548e-03	ci right 1.379125e-03	k: 2493	n:1880000
KS ci ratio: 7.361881e-02	ci left: 1.450404e-03	ci right 1.561779e-03	k: 2830	n:1880000
PCBP1   1880000 perm   1573 sec   (1195 perm/sec)   p_kst 1.505319e-03   p_cons 1.326064e-03   p_joint 1.329787e-04

Joint ci ratio: 2.469203e-01	ci left: 1.168824e-04	ci right 1.502894e-04	k: 251	n:1890000
Cons ci ratio: 7.822289e-02	ci left: 1.275067e-03	ci right 1.379381e-03	k: 2507	n:1890000
KS ci ratio: 7.351515e-02	ci left: 1.446884e-03	ci right 1.557827e-03	k: 2838	n:1890000
PCBP1   1890000 perm   1588 sec   (1190 perm/sec)   p_kst 1.501587e-03   p_cons 1.326455e-03   p_joint 1.328042e-04

Joint ci ratio: 2.459462e-01	ci left: 1.172549e-04	ci right 1.506159e-04	k: 253	n:1900000
Cons ci ratio: 7.788187e-02	ci left: 1.279709e-03	ci right 1.383926e-03	k: 2529	n:1900000
KS ci ratio: 7.332170e-02	ci left: 1.447019e-03	ci right 1.557667e-03	k: 2853	n:1900000
PCBP1   1900000 perm   1603 sec   (1185 perm/sec)   p_kst 1.501579e-03   p_cons 1.331053e-03   p_joint 1.331579e-04

Joint ci ratio: 2.454635e-01	ci left: 1.171323e-04	ci right 1.503831e-04	k: 254	n:1910000
Cons ci ratio: 7.763671e-02	ci left: 1.281223e-03	ci right 1.385220e-03	k: 2545	n:1910000
KS ci ratio: 7.306604e-02	ci left: 1.449723e-03	ci right 1.560175e-03	k: 2873	n:1910000
PCBP1   1910000 perm   1619 sec   (1180 perm/sec)   p_kst 1.504188e-03   p_cons 1.332461e-03   p_joint 1.329843e-04

Joint ci ratio: 2.445065e-01	ci left: 1.175000e-04	ci right 1.507053e-04	k: 256	n:1920000
Cons ci ratio: 7.745442e-02	ci left: 1.280679e-03	ci right 1.384376e-03	k: 2557	n:1920000
KS ci ratio: 7.286348e-02	ci left: 1.450353e-03	ci right 1.560534e-03	k: 2889	n:1920000
PCBP1   1920000 perm   1634 sec   (1175 perm/sec)   p_kst 1.504687e-03   p_cons 1.331771e-03   p_joint 1.333333e-04

Joint ci ratio: 2.435605e-01	ci left: 1.178641e-04	ci right 1.510240e-04	k: 258	n:1930000
Cons ci ratio: 7.709339e-02	ci left: 1.286238e-03	ci right 1.389879e-03	k: 2581	n:1930000
KS ci ratio: 7.272529e-02	ci left: 1.448434e-03	ci right 1.558252e-03	k: 2900	n:1930000
PCBP1   1930000 perm   1650 sec   (1170 perm/sec)   p_kst 1.502591e-03   p_cons 1.337306e-03   p_joint 1.336788e-04

Joint ci ratio: 2.426255e-01	ci left: 1.182247e-04	ci right 1.513391e-04	k: 260	n:1940000
Cons ci ratio: 7.692974e-02	ci left: 1.285169e-03	ci right 1.388494e-03	k: 2592	n:1940000
KS ci ratio: 7.245096e-02	ci left: 1.452103e-03	ci right 1.561765e-03	k: 2922	n:1940000
PCBP1   1940000 perm   1665 sec   (1165 perm/sec)   p_kst 1.506186e-03   p_cons 1.336082e-03   p_joint 1.340206e-04

Joint ci ratio: 2.421621e-01	ci left: 1.181000e-04	ci right 1.511069e-04	k: 261	n:1950000
Cons ci ratio: 7.673763e-02	ci left: 1.285117e-03	ci right 1.388168e-03	k: 2605	n:1950000
KS ci ratio: 7.232744e-02	ci left: 1.449691e-03	ci right 1.558977e-03	k: 2932	n:1950000
PCBP1   1950000 perm   1681 sec   (1160 perm/sec)   p_kst 1.503590e-03   p_cons 1.335897e-03   p_joint 1.338462e-04

Joint ci ratio: 2.421622e-01	ci left: 1.174975e-04	ci right 1.503360e-04	k: 261	n:1960000
Cons ci ratio: 7.662022e-02	ci left: 1.282564e-03	ci right 1.385245e-03	k: 2613	n:1960000
KS ci ratio: 7.210646e-02	ci left: 1.451313e-03	ci right 1.560373e-03	k: 2950	n:1960000
PCBP1   1960000 perm   1697 sec   (1155 perm/sec)   p_kst 1.505102e-03   p_cons 1.333163e-03   p_joint 1.331633e-04

Joint ci ratio: 2.407874e-01	ci left: 1.183318e-04	ci right 1.511877e-04	k: 264	n:1970000
Cons ci ratio: 7.645955e-02	ci left: 1.281530e-03	ci right 1.383904e-03	k: 2624	n:1970000
KS ci ratio: 7.194819e-02	ci left: 1.450426e-03	ci right 1.559170e-03	k: 2963	n:1970000
PCBP1   1970000 perm   1712 sec   (1151 perm/sec)   p_kst 1.504061e-03   p_cons 1.331980e-03   p_joint 1.340102e-04

Joint ci ratio: 2.403344e-01	ci left: 1.182087e-04	ci right 1.509595e-04	k: 265	n:1980000
Cons ci ratio: 7.631440e-02	ci left: 1.280012e-03	ci right 1.382062e-03	k: 2634	n:1980000
KS ci ratio: 7.177889e-02	ci left: 1.450044e-03	ci right 1.558493e-03	k: 2977	n:1980000
PCBP1   1980000 perm   1727 sec   (1146 perm/sec)   p_kst 1.503535e-03   p_cons 1.330303e-03   p_joint 1.338384e-04

Joint ci ratio: 2.394359e-01	ci left: 1.185594e-04	ci right 1.512662e-04	k: 267	n:1990000
Cons ci ratio: 7.606934e-02	ci left: 1.281960e-03	ci right 1.383822e-03	k: 2651	n:1990000
KS ci ratio: 7.158683e-02	ci left: 1.450653e-03	ci right 1.558846e-03	k: 2993	n:1990000
PCBP1   1990000 perm   1743 sec   (1142 perm/sec)   p_kst 1.504020e-03   p_cons 1.332161e-03   p_joint 1.341709e-04

Joint ci ratio: 2.385474e-01	ci left: 1.189067e-04	ci right 1.515697e-04	k: 269	n:2000000
Cons ci ratio: 7.588358e-02	ci left: 1.281926e-03	ci right 1.383526e-03	k: 2664	n:2000000
KS ci ratio: 7.140817e-02	ci left: 1.450766e-03	ci right 1.558686e-03	k: 3008	n:2000000
PCBP1   2000000 perm   1759 sec   (1137 perm/sec)   p_kst 1.504000e-03   p_cons 1.332000e-03   p_joint 1.345000e-04

Joint ci ratio: 2.421626e-01	ci left: 1.145746e-04	ci right 1.465963e-04	k: 261	n:2010000
Cons ci ratio: 7.568503e-02	ci left: 1.282382e-03	ci right 1.383740e-03	k: 2678	n:2010000
KS ci ratio: 7.121906e-02	ci left: 1.451367e-03	ci right 1.559033e-03	k: 3024	n:2010000
PCBP1   2010000 perm   1774 sec   (1133 perm/sec)   p_kst 1.504478e-03   p_cons 1.332338e-03   p_joint 1.298507e-04

Joint ci ratio: 2.412435e-01	ci left: 1.149376e-04	ci right 1.469205e-04	k: 263	n:2020000
Cons ci ratio: 7.550207e-02	ci left: 1.282347e-03	ci right 1.383447e-03	k: 2691	n:2020000
KS ci ratio: 7.104314e-02	ci left: 1.451475e-03	ci right 1.558873e-03	k: 3039	n:2020000
PCBP1   2020000 perm   1791 sec   (1128 perm/sec)   p_kst 1.504455e-03   p_cons 1.332178e-03   p_joint 1.301980e-04

Joint ci ratio: 2.403348e-01	ci left: 1.152972e-04	ci right 1.472413e-04	k: 265	n:2030000
Cons ci ratio: 7.532043e-02	ci left: 1.282314e-03	ci right 1.383157e-03	k: 2704	n:2030000
KS ci ratio: 7.084529e-02	ci left: 1.452551e-03	ci right 1.559717e-03	k: 3056	n:2030000
PCBP1   2030000 perm   1806 sec   (1124 perm/sec)   p_kst 1.505419e-03   p_cons 1.332020e-03   p_joint 1.305419e-04

Joint ci ratio: 2.403349e-01	ci left: 1.147320e-04	ci right 1.465196e-04	k: 265	n:2040000
Cons ci ratio: 7.522328e-02	ci left: 1.279394e-03	ci right 1.379873e-03	k: 2711	n:2040000
KS ci ratio: 7.069517e-02	ci left: 1.451690e-03	ci right 1.558556e-03	k: 3069	n:2040000
PCBP1   2040000 perm   1822 sec   (1120 perm/sec)   p_kst 1.504412e-03   p_cons 1.328922e-03   p_joint 1.299020e-04

Joint ci ratio: 2.398844e-01	ci left: 1.146308e-04	ci right 1.463219e-04	k: 266	n:2050000
Cons ci ratio: 7.505743e-02	ci left: 1.278897e-03	ci right 1.379106e-03	k: 2723	n:2050000
KS ci ratio: 7.052309e-02	ci left: 1.451797e-03	ci right 1.558400e-03	k: 3084	n:2050000
PCBP1   2050000 perm   1838 sec   (1115 perm/sec)   p_kst 1.504390e-03   p_cons 1.328293e-03   p_joint 1.297561e-04

Joint ci ratio: 2.389910e-01	ci left: 1.149870e-04	ci right 1.466406e-04	k: 268	n:2060000
Cons ci ratio: 7.486528e-02	ci left: 1.279358e-03	ci right 1.379334e-03	k: 2737	n:2060000
KS ci ratio: 7.035227e-02	ci left: 1.451903e-03	ci right 1.558244e-03	k: 3099	n:2060000
PCBP1   2060000 perm   1854 sec   (1111 perm/sec)   p_kst 1.504369e-03   p_cons 1.328641e-03   p_joint 1.300971e-04

Joint ci ratio: 2.381074e-01	ci left: 1.153399e-04	ci right 1.469561e-04	k: 270	n:2070000
Cons ci ratio: 7.468818e-02	ci left: 1.279340e-03	ci right 1.379068e-03	k: 2750	n:2070000
KS ci ratio: 7.025047e-02	ci left: 1.449160e-03	ci right 1.555141e-03	k: 3108	n:2070000
PCBP1   2070000 perm   1870 sec   (1107 perm/sec)   p_kst 1.501449e-03   p_cons 1.328502e-03   p_joint 1.304348e-04

Joint ci ratio: 2.372336e-01	ci left: 1.156897e-04	ci right 1.472682e-04	k: 272	n:2080000
Cons ci ratio: 7.459345e-02	ci left: 1.276492e-03	ci right 1.375867e-03	k: 2757	n:2080000
KS ci ratio: 7.011533e-02	ci left: 1.447861e-03	ci right 1.553535e-03	k: 3120	n:2080000
PCBP1   2080000 perm   1886 sec   (1103 perm/sec)   p_kst 1.500000e-03   p_cons 1.325481e-03   p_joint 1.307692e-04

Joint ci ratio: 2.368003e-01	ci left: 1.155862e-04	ci right 1.470704e-04	k: 273	n:2090000
Cons ci ratio: 7.444518e-02	ci left: 1.275549e-03	ci right 1.374645e-03	k: 2768	n:2090000
KS ci ratio: 6.991396e-02	ci left: 1.449395e-03	ci right 1.554865e-03	k: 3138	n:2090000
PCBP1   2090000 perm   1902 sec   (1099 perm/sec)   p_kst 1.501435e-03   p_cons 1.324402e-03   p_joint 1.306220e-04

Joint ci ratio: 2.368004e-01	ci left: 1.150358e-04	ci right 1.463701e-04	k: 273	n:2100000
Cons ci ratio: 7.428442e-02	ci left: 1.275083e-03	ci right 1.373919e-03	k: 2780	n:2100000
KS ci ratio: 6.973644e-02	ci left: 1.449979e-03	ci right 1.555213e-03	k: 3154	n:2100000
PCBP1   2100000 perm   1918 sec   (1095 perm/sec)   p_kst 1.501905e-03   p_cons 1.323810e-03   p_joint 1.300000e-04

Joint ci ratio: 2.368004e-01	ci left: 1.144906e-04	ci right 1.456764e-04	k: 273	n:2110000
Cons ci ratio: 7.408486e-02	ci left: 1.276017e-03	ci right 1.374649e-03	k: 2795	n:2110000
KS ci ratio: 6.960425e-02	ci left: 1.448695e-03	ci right 1.553628e-03	k: 3166	n:2110000
PCBP1   2110000 perm   1935 sec   (1091 perm/sec)   p_kst 1.500474e-03   p_cons 1.324645e-03   p_joint 1.293839e-04

Joint ci ratio: 2.368005e-01	ci left: 1.139505e-04	ci right 1.449892e-04	k: 273	n:2120000
Cons ci ratio: 7.396598e-02	ci left: 1.274165e-03	ci right 1.372488e-03	k: 2804	n:2120000
KS ci ratio: 6.948375e-02	ci left: 1.446960e-03	ci right 1.551579e-03	k: 3177	n:2120000
PCBP1   2120000 perm   1952 sec   (1086 perm/sec)   p_kst 1.498585e-03   p_cons 1.322642e-03   p_joint 1.287736e-04

Joint ci ratio: 2.363696e-01	ci left: 1.138572e-04	ci right 1.448058e-04	k: 274	n:2130000
Cons ci ratio: 7.380829e-02	ci left: 1.273713e-03	ci right 1.371783e-03	k: 2816	n:2130000
KS ci ratio: 6.934210e-02	ci left: 1.446164e-03	ci right 1.550504e-03	k: 3190	n:2130000
PCBP1   2130000 perm   1968 sec   (1082 perm/sec)   p_kst 1.497653e-03   p_cons 1.322066e-03   p_joint 1.286385e-04

Joint ci ratio: 2.350907e-01	ci left: 1.146442e-04	ci right 1.456137e-04	k: 277	n:2140000
Cons ci ratio: 7.363858e-02	ci left: 1.273724e-03	ci right 1.371559e-03	k: 2829	n:2140000
KS ci ratio: 6.916889e-02	ci left: 1.446754e-03	ci right 1.550864e-03	k: 3206	n:2140000
PCBP1   2140000 perm   1985 sec   (1078 perm/sec)   p_kst 1.498131e-03   p_cons 1.321963e-03   p_joint 1.294393e-04

Joint ci ratio: 2.368007e-01	ci left: 1.123605e-04	ci right 1.429662e-04	k: 273	n:2150000
Cons ci ratio: 7.349592e-02	ci left: 1.272821e-03	ci right 1.370390e-03	k: 2840	n:2150000
KS ci ratio: 6.891137e-02	ci left: 1.450995e-03	ci right 1.555007e-03	k: 3230	n:2150000
PCBP1   2150000 perm   2002 sec   (1074 perm/sec)   p_kst 1.502326e-03   p_cons 1.320930e-03   p_joint 1.269767e-04

Joint ci ratio: 2.363698e-01	ci left: 1.122758e-04	ci right 1.427946e-04	k: 274	n:2160000
Cons ci ratio: 7.334121e-02	ci left: 1.272382e-03	ci right 1.369703e-03	k: 2852	n:2160000
KS ci ratio: 6.875197e-02	ci left: 1.451102e-03	ci right 1.554871e-03	k: 3245	n:2160000
PCBP1   2160000 perm   2018 sec   (1070 perm/sec)   p_kst 1.502315e-03   p_cons 1.320370e-03   p_joint 1.268519e-04

Joint ci ratio: 2.363699e-01	ci left: 1.117584e-04	ci right 1.421366e-04	k: 274	n:2170000
Cons ci ratio: 7.325151e-02	ci left: 1.269685e-03	ci right 1.366676e-03	k: 2859	n:2170000
KS ci ratio: 6.862529e-02	ci left: 1.449850e-03	ci right 1.553331e-03	k: 3257	n:2170000
PCBP1   2170000 perm   2035 sec   (1066 perm/sec)   p_kst 1.500922e-03   p_cons 1.317512e-03   p_joint 1.262673e-04

Joint ci ratio: 2.355150e-01	ci left: 1.121090e-04	ci right 1.424562e-04	k: 276	n:2180000
Cons ci ratio: 7.312383e-02	ci left: 1.268364e-03	ci right 1.365078e-03	k: 2869	n:2180000
KS ci ratio: 6.839464e-02	ci left: 1.453118e-03	ci right 1.556470e-03	k: 3279	n:2180000
PCBP1   2180000 perm   2052 sec   (1062 perm/sec)   p_kst 1.504128e-03   p_cons 1.316055e-03   p_joint 1.266055e-04

Joint ci ratio: 2.342498e-01	ci left: 1.128863e-04	ci right 1.432560e-04	k: 279	n:2190000
Cons ci ratio: 7.302222e-02	ci left: 1.266159e-03	ci right 1.362565e-03	k: 2877	n:2190000
KS ci ratio: 6.822842e-02	ci left: 1.453664e-03	ci right 1.556794e-03	k: 3295	n:2190000
PCBP1   2190000 perm   2069 sec   (1058 perm/sec)   p_kst 1.504566e-03   p_cons 1.313699e-03   p_joint 1.273973e-04

Joint ci ratio: 2.346693e-01	ci left: 1.119454e-04	ci right 1.421236e-04	k: 278	n:2200000
Cons ci ratio: 7.282003e-02	ci left: 1.267544e-03	ci right 1.363777e-03	k: 2893	n:2200000
KS ci ratio: 6.802228e-02	ci left: 1.455993e-03	ci right 1.558963e-03	k: 3315	n:2200000
PCBP1   2200000 perm   2086 sec   (1054 perm/sec)   p_kst 1.506818e-03   p_cons 1.315000e-03   p_joint 1.263636e-04

Joint ci ratio: 2.346694e-01	ci left: 1.114388e-04	ci right 1.414806e-04	k: 278	n:2210000
Cons ci ratio: 7.264452e-02	ci left: 1.268028e-03	ci right 1.364056e-03	k: 2907	n:2210000
KS ci ratio: 6.785875e-02	ci left: 1.456521e-03	ci right 1.559272e-03	k: 3331	n:2210000
PCBP1   2210000 perm   2103 sec   (1051 perm/sec)   p_kst 1.507240e-03   p_cons 1.315385e-03   p_joint 1.257919e-04

Joint ci ratio: 2.338327e-01	ci left: 1.117849e-04	ci right 1.417969e-04	k: 280	n:2220000
Cons ci ratio: 7.247027e-02	ci left: 1.268508e-03	ci right 1.364332e-03	k: 2921	n:2220000
KS ci ratio: 6.764582e-02	ci left: 1.459260e-03	ci right 1.561868e-03	k: 3352	n:2220000
PCBP1   2220000 perm   2120 sec   (1047 perm/sec)   p_kst 1.509910e-03   p_cons 1.315766e-03   p_joint 1.261261e-04

Joint ci ratio: 2.338328e-01	ci left: 1.112836e-04	ci right 1.411611e-04	k: 280	n:2230000
Cons ci ratio: 7.230960e-02	ci left: 1.268544e-03	ci right 1.364149e-03	k: 2934	n:2230000
KS ci ratio: 6.754525e-02	ci left: 1.457124e-03	ci right 1.559424e-03	k: 3362	n:2230000
PCBP1   2230000 perm   2137 sec   (1043 perm/sec)   p_kst 1.507623e-03   p_cons 1.315695e-03   p_joint 1.255605e-04

Joint ci ratio: 2.338329e-01	ci left: 1.107868e-04	ci right 1.405309e-04	k: 280	n:2240000
Cons ci ratio: 7.216224e-02	ci left: 1.268141e-03	ci right 1.363513e-03	k: 2946	n:2240000
KS ci ratio: 6.746516e-02	ci left: 1.454130e-03	ci right 1.556094e-03	k: 3370	n:2240000
PCBP1   2240000 perm   2155 sec   (1039 perm/sec)   p_kst 1.504464e-03   p_cons 1.315179e-03   p_joint 1.250000e-04

Joint ci ratio: 2.330051e-01	ci left: 1.111313e-04	ci right 1.408471e-04	k: 282	n:2250000
Cons ci ratio: 7.199143e-02	ci left: 1.268615e-03	ci right 1.363787e-03	k: 2960	n:2250000
KS ci ratio: 6.733548e-02	ci left: 1.453348e-03	ci right 1.555053e-03	k: 3383	n:2250000
PCBP1   2250000 perm   2173 sec   (1036 perm/sec)   p_kst 1.503556e-03   p_cons 1.315556e-03   p_joint 1.253333e-04

Joint ci ratio: 2.325945e-01	ci left: 1.110563e-04	ci right 1.406921e-04	k: 283	n:2260000
Cons ci ratio: 7.179767e-02	ci left: 1.269954e-03	ci right 1.364960e-03	k: 2976	n:2260000
KS ci ratio: 6.718674e-02	ci left: 1.453443e-03	ci right 1.554921e-03	k: 3398	n:2260000
PCBP1   2260000 perm   2190 sec   (1032 perm/sec)   p_kst 1.503540e-03   p_cons 1.316814e-03   p_joint 1.252212e-04

Joint ci ratio: 2.350915e-01	ci left: 1.080787e-04	ci right 1.372746e-04	k: 277	n:2270000
Cons ci ratio: 7.170147e-02	ci left: 1.267820e-03	ci right 1.362534e-03	k: 2984	n:2270000
KS ci ratio: 6.707834e-02	ci left: 1.451804e-03	ci right 1.552998e-03	k: 3409	n:2270000
PCBP1   2270000 perm   2208 sec   (1028 perm/sec)   p_kst 1.501762e-03   p_cons 1.314537e-03   p_joint 1.220264e-04

Joint ci ratio: 2.350916e-01	ci left: 1.076046e-04	ci right 1.366725e-04	k: 277	n:2280000
Cons ci ratio: 7.159369e-02	ci left: 1.266136e-03	ci right 1.360576e-03	k: 2993	n:2280000
KS ci ratio: 6.689219e-02	ci left: 1.453631e-03	ci right 1.554660e-03	k: 3428	n:2280000
PCBP1   2280000 perm   2227 sec   (1024 perm/sec)   p_kst 1.503509e-03   p_cons 1.312719e-03   p_joint 1.214912e-04

Joint ci ratio: 2.346699e-01	ci left: 1.075457e-04	ci right 1.365380e-04	k: 278	n:2290000
Cons ci ratio: 7.145066e-02	ci left: 1.265754e-03	ci right 1.359969e-03	k: 3005	n:2290000
KS ci ratio: 6.678521e-02	ci left: 1.452006e-03	ci right 1.552755e-03	k: 3439	n:2290000
PCBP1   2290000 perm   2245 sec   (1020 perm/sec)   p_kst 1.501747e-03   p_cons 1.312227e-03   p_joint 1.213974e-04

Joint ci ratio: 2.479090e-01	ci left: 9.523106e-05	ci right 1.225755e-04	k: 249	n:2300000
Cons ci ratio: 7.127303e-02	ci left: 1.266656e-03	ci right 1.360694e-03	k: 3020	n:2300000
KS ci ratio: 6.665941e-02	ci left: 1.451251e-03	ci right 1.551750e-03	k: 3452	n:2300000
PCBP1   2300000 perm   2262 sec   (1017 perm/sec)   p_kst 1.500870e-03   p_cons 1.313043e-03   p_joint 1.082609e-04

Joint ci ratio: 2.479091e-01	ci left: 9.481880e-05	ci right 1.220449e-04	k: 249	n:2310000
Cons ci ratio: 7.104986e-02	ci left: 1.269251e-03	ci right 1.363175e-03	k: 3039	n:2310000
KS ci ratio: 6.654392e-02	ci left: 1.450077e-03	ci right 1.550314e-03	k: 3464	n:2310000
PCBP1   2310000 perm   2281 sec   (1013 perm/sec)   p_kst 1.499567e-03   p_cons 1.315584e-03   p_joint 1.077922e-04

Joint ci ratio: 2.469233e-01	ci left: 9.521873e-05	ci right 1.224343e-04	k: 251	n:2320000
Cons ci ratio: 7.086358e-02	ci left: 1.270555e-03	ci right 1.364318e-03	k: 3055	n:2320000
KS ci ratio: 6.635263e-02	ci left: 1.452304e-03	ci right 1.552395e-03	k: 3484	n:2320000
PCBP1   2320000 perm   2298 sec   (1009 perm/sec)   p_kst 1.501724e-03   p_cons 1.316810e-03   p_joint 1.081897e-04

Joint ci ratio: 2.469234e-01	ci left: 9.481006e-05	ci right 1.219088e-04	k: 251	n:2330000
Cons ci ratio: 7.078265e-02	ci left: 1.268053e-03	ci right 1.361520e-03	k: 3062	n:2330000
KS ci ratio: 6.619136e-02	ci left: 1.453246e-03	ci right 1.553150e-03	k: 3501	n:2330000
PCBP1   2330000 perm   2316 sec   (1006 perm/sec)   p_kst 1.502575e-03   p_cons 1.314163e-03   p_joint 1.077253e-04

Joint ci ratio: 2.459493e-01	ci left: 9.520681e-05	ci right 1.222952e-04	k: 253	n:2340000
Cons ci ratio: 7.065593e-02	ci left: 1.267251e-03	ci right 1.360486e-03	k: 3073	n:2340000
KS ci ratio: 6.605946e-02	ci left: 1.452920e-03	ci right 1.552594e-03	k: 3515	n:2340000
PCBP1   2340000 perm   2335 sec   (1002 perm/sec)   p_kst 1.502137e-03   p_cons 1.313248e-03   p_joint 1.081197e-04

Joint ci ratio: 2.459493e-01	ci left: 9.480167e-05	ci right 1.217748e-04	k: 253	n:2350000
Cons ci ratio: 7.058718e-02	ci left: 1.264367e-03	ci right 1.357295e-03	k: 3079	n:2350000
KS ci ratio: 6.592835e-02	ci left: 1.452596e-03	ci right 1.552043e-03	k: 3529	n:2350000
PCBP1   2350000 perm   2353 sec   (999 perm/sec)   p_kst 1.501702e-03   p_cons 1.310213e-03   p_joint 1.076596e-04

Joint ci ratio: 2.540830e-01	ci left: 8.804492e-05	ci right 1.140554e-04	k: 237	n:2360000
Cons ci ratio: 7.039312e-02	ci left: 1.266086e-03	ci right 1.358874e-03	k: 3096	n:2360000
KS ci ratio: 6.571450e-02	ci left: 1.456026e-03	ci right 1.555373e-03	k: 3552	n:2360000
PCBP1   2360000 perm   2371 sec   (995 perm/sec)   p_kst 1.505085e-03   p_cons 1.311864e-03   p_joint 1.004237e-04

Joint ci ratio: 2.530220e-01	ci left: 8.846368e-05	ci right 1.144715e-04	k: 239	n:2370000
Cons ci ratio: 7.029112e-02	ci left: 1.264474e-03	ci right 1.357004e-03	k: 3105	n:2370000
KS ci ratio: 6.553944e-02	ci left: 1.457768e-03	ci right 1.556958e-03	k: 3571	n:2370000
PCBP1   2370000 perm   2389 sec   (992 perm/sec)   p_kst 1.506751e-03   p_cons 1.310127e-03   p_joint 1.008439e-04

Joint ci ratio: 2.530221e-01	ci left: 8.809198e-05	ci right 1.139906e-04	k: 239	n:2380000
Cons ci ratio: 7.013323e-02	ci left: 1.264940e-03	ci right 1.357288e-03	k: 3119	n:2380000
KS ci ratio: 6.542967e-02	ci left: 1.456603e-03	ci right 1.555541e-03	k: 3583	n:2380000
PCBP1   2380000 perm   2408 sec   (988 perm/sec)   p_kst 1.505462e-03   p_cons 1.310504e-03   p_joint 1.004202e-04

Joint ci ratio: 2.524966e-01	ci left: 8.811531e-05	ci right 1.139585e-04	k: 240	n:2390000
Cons ci ratio: 6.995405e-02	ci left: 1.266225e-03	ci right 1.358421e-03	k: 3135	n:2390000
KS ci ratio: 6.529318e-02	ci left: 1.456682e-03	ci right 1.555411e-03	k: 3598	n:2390000
PCBP1   2390000 perm   2427 sec   (985 perm/sec)   p_kst 1.505439e-03   p_cons 1.311715e-03   p_joint 1.004184e-04

Joint ci ratio: 2.519744e-01	ci left: 8.813849e-05	ci right 1.139266e-04	k: 241	n:2400000
Cons ci ratio: 6.977623e-02	ci left: 1.267499e-03	ci right 1.359544e-03	k: 3151	n:2400000
KS ci ratio: 6.513047e-02	ci left: 1.457990e-03	ci right 1.556553e-03	k: 3616	n:2400000
PCBP1   2400000 perm   2445 sec   (981 perm/sec)   p_kst 1.506667e-03   p_cons 1.312917e-03   p_joint 1.004167e-04

Joint ci ratio: 2.509395e-01	ci left: 8.855035e-05	ci right 1.143359e-04	k: 243	n:2410000
Cons ci ratio: 6.963278e-02	ci left: 1.267540e-03	ci right 1.359391e-03	k: 3164	n:2410000
KS ci ratio: 6.504069e-02	ci left: 1.456022e-03	ci right 1.554311e-03	k: 3626	n:2410000
PCBP1   2410000 perm   2464 sec   (978 perm/sec)   p_kst 1.504564e-03   p_cons 1.312863e-03   p_joint 1.008299e-04

Joint ci ratio: 2.509396e-01	ci left: 8.818444e-05	ci right 1.138635e-04	k: 243	n:2420000
Cons ci ratio: 6.945740e-02	ci left: 1.268799e-03	ci right 1.360500e-03	k: 3180	n:2420000
KS ci ratio: 6.492447e-02	ci left: 1.455290e-03	ci right 1.553347e-03	k: 3639	n:2420000
PCBP1   2420000 perm   2483 sec   (975 perm/sec)   p_kst 1.503719e-03   p_cons 1.314050e-03   p_joint 1.004132e-04

Joint ci ratio: 2.509396e-01	ci left: 8.782154e-05	ci right 1.133949e-04	k: 243	n:2430000
Cons ci ratio: 6.931591e-02	ci left: 1.268835e-03	ci right 1.360344e-03	k: 3193	n:2430000
KS ci ratio: 6.479111e-02	ci left: 1.455374e-03	ci right 1.553228e-03	k: 3654	n:2430000
PCBP1   2430000 perm   2501 sec   (972 perm/sec)   p_kst 1.503704e-03   p_cons 1.313992e-03   p_joint 1.000000e-04

Joint ci ratio: 2.509397e-01	ci left: 8.746161e-05	ci right 1.129302e-04	k: 243	n:2440000
Cons ci ratio: 6.913212e-02	ci left: 1.270481e-03	ci right 1.361856e-03	k: 3210	n:2440000
KS ci ratio: 6.471157e-02	ci left: 1.453038e-03	ci right 1.550610e-03	k: 3663	n:2440000
PCBP1   2440000 perm   2520 sec   (968 perm/sec)   p_kst 1.501230e-03   p_cons 1.315574e-03   p_joint 9.959016e-05

Joint ci ratio: 2.509397e-01	ci left: 8.710462e-05	ci right 1.124692e-04	k: 243	n:2450000
Cons ci ratio: 6.894979e-02	ci left: 1.272115e-03	ci right 1.363356e-03	k: 3227	n:2450000
KS ci ratio: 6.461470e-02	ci left: 1.451524e-03	ci right 1.548844e-03	k: 3674	n:2450000
PCBP1   2450000 perm   2539 sec   (965 perm/sec)   p_kst 1.499592e-03   p_cons 1.317143e-03   p_joint 9.918367e-05

Joint ci ratio: 2.499175e-01	ci left: 8.751253e-05	ci right 1.128760e-04	k: 245	n:2460000
Cons ci ratio: 6.882200e-02	ci left: 1.271737e-03	ci right 1.362776e-03	k: 3239	n:2460000
KS ci ratio: 6.446574e-02	ci left: 1.452423e-03	ci right 1.549570e-03	k: 3691	n:2460000
PCBP1   2460000 perm   2558 sec   (962 perm/sec)   p_kst 1.500407e-03   p_cons 1.316667e-03   p_joint 9.959350e-05

Joint ci ratio: 2.489077e-01	ci left: 8.791734e-05	ci right 1.132792e-04	k: 247	n:2470000
Cons ci ratio: 6.872667e-02	ci left: 1.270170e-03	ci right 1.360965e-03	k: 3248	n:2470000
KS ci ratio: 6.435257e-02	ci left: 1.451721e-03	ci right 1.548644e-03	k: 3704	n:2470000
PCBP1   2470000 perm   2577 sec   (958 perm/sec)   p_kst 1.499595e-03   p_cons 1.314980e-03   p_joint 1.000000e-04

Joint ci ratio: 2.489078e-01	ci left: 8.756283e-05	ci right 1.128224e-04	k: 247	n:2480000
Cons ci ratio: 6.856854e-02	ci left: 1.270993e-03	ci right 1.361630e-03	k: 3263	n:2480000
KS ci ratio: 6.423999e-02	ci left: 1.451025e-03	ci right 1.547726e-03	k: 3717	n:2480000
PCBP1   2480000 perm   2596 sec   (955 perm/sec)   p_kst 1.498790e-03   p_cons 1.315726e-03   p_joint 9.959677e-05

Joint ci ratio: 2.489078e-01	ci left: 8.721117e-05	ci right 1.123693e-04	k: 247	n:2490000
Cons ci ratio: 6.840106e-02	ci left: 1.272204e-03	ci right 1.362697e-03	k: 3279	n:2490000
KS ci ratio: 6.403354e-02	ci left: 1.454682e-03	ci right 1.551303e-03	k: 3741	n:2490000
PCBP1   2490000 perm   2615 sec   (952 perm/sec)   p_kst 1.502410e-03   p_cons 1.316867e-03   p_joint 9.919679e-05

Joint ci ratio: 2.484075e-01	ci left: 8.723740e-05	ci right 1.123447e-04	k: 248	n:2500000
Cons ci ratio: 6.826591e-02	ci left: 1.272226e-03	ci right 1.362535e-03	k: 3292	n:2500000
KS ci ratio: 6.389707e-02	ci left: 1.455160e-03	ci right 1.551600e-03	k: 3757	n:2500000
PCBP1   2500000 perm   2634 sec   (949 perm/sec)   p_kst 1.502800e-03   p_cons 1.316800e-03   p_joint 9.920000e-05

Joint ci ratio: 2.479102e-01	ci left: 8.726347e-05	ci right 1.123203e-04	k: 249	n:2510000
Cons ci ratio: 6.816254e-02	ci left: 1.271074e-03	ci right 1.361159e-03	k: 3302	n:2510000
KS ci ratio: 6.375301e-02	ci left: 1.456028e-03	ci right 1.552299e-03	k: 3774	n:2510000
PCBP1   2510000 perm   2654 sec   (946 perm/sec)   p_kst 1.503586e-03   p_cons 1.315538e-03   p_joint 9.920319e-05

Joint ci ratio: 2.469244e-01	ci left: 8.766164e-05	ci right 1.127173e-04	k: 251	n:2520000
Cons ci ratio: 6.805963e-02	ci left: 1.269930e-03	ci right 1.359793e-03	k: 3312	n:2520000
KS ci ratio: 6.363513e-02	ci left: 1.455717e-03	ci right 1.551784e-03	k: 3788	n:2520000
PCBP1   2520000 perm   2673 sec   (943 perm/sec)   p_kst 1.503175e-03   p_cons 1.314286e-03   p_joint 9.960317e-05

Joint ci ratio: 2.459503e-01	ci left: 8.805685e-05	ci right 1.131110e-04	k: 253	n:2530000
Cons ci ratio: 6.796743e-02	ci left: 1.268408e-03	ci right 1.358036e-03	k: 3321	n:2530000
KS ci ratio: 6.351791e-02	ci left: 1.455409e-03	ci right 1.551272e-03	k: 3802	n:2530000
PCBP1   2530000 perm   2693 sec   (939 perm/sec)   p_kst 1.502767e-03   p_cons 1.312648e-03   p_joint 1.000000e-04

Joint ci ratio: 2.459503e-01	ci left: 8.771017e-05	ci right 1.126657e-04	k: 253	n:2540000
Cons ci ratio: 6.779414e-02	ci left: 1.269993e-03	ci right 1.359496e-03	k: 3338	n:2540000
KS ci ratio: 6.341797e-02	ci left: 1.454328e-03	ci right 1.549964e-03	k: 3814	n:2540000
PCBP1   2540000 perm   2713 sec   (936 perm/sec)   p_kst 1.501575e-03   p_cons 1.314173e-03   p_joint 9.960630e-05

Joint ci ratio: 2.454676e-01	ci left: 8.773422e-05	ci right 1.126401e-04	k: 254	n:2550000
Cons ci ratio: 6.771314e-02	ci left: 1.268097e-03	ci right 1.357355e-03	k: 3346	n:2550000
KS ci ratio: 6.328539e-02	ci left: 1.454800e-03	ci right 1.550259e-03	k: 3830	n:2550000
PCBP1   2550000 perm   2732 sec   (933 perm/sec)   p_kst 1.501961e-03   p_cons 1.312157e-03   p_joint 9.960784e-05

Joint ci ratio: 2.454676e-01	ci left: 8.739151e-05	ci right 1.122001e-04	k: 254	n:2560000
Cons ci ratio: 6.756189e-02	ci left: 1.268904e-03	ci right 1.358012e-03	k: 3361	n:2560000
KS ci ratio: 6.317008e-02	ci left: 1.454500e-03	ci right 1.549759e-03	k: 3844	n:2560000
PCBP1   2560000 perm   2751 sec   (930 perm/sec)   p_kst 1.501563e-03   p_cons 1.312891e-03   p_joint 9.921875e-05

Joint ci ratio: 2.454677e-01	ci left: 8.705146e-05	ci right 1.117636e-04	k: 254	n:2570000
Cons ci ratio: 6.746167e-02	ci left: 1.267792e-03	ci right 1.356684e-03	k: 3371	n:2570000
KS ci ratio: 6.306358e-02	ci left: 1.453819e-03	ci right 1.548867e-03	k: 3857	n:2570000
PCBP1   2570000 perm   2771 sec   (927 perm/sec)   p_kst 1.500778e-03   p_cons 1.311673e-03   p_joint 9.883268e-05

Joint ci ratio: 2.449878e-01	ci left: 8.707783e-05	ci right 1.117417e-04	k: 255	n:2580000
Cons ci ratio: 6.731210e-02	ci left: 1.268594e-03	ci right 1.357338e-03	k: 3386	n:2580000
KS ci ratio: 6.297392e-02	ci left: 1.452380e-03	ci right 1.547194e-03	k: 3868	n:2580000
PCBP1   2580000 perm   2791 sec   (924 perm/sec)   p_kst 1.499225e-03   p_cons 1.312403e-03   p_joint 9.883721e-05

Joint ci ratio: 2.449878e-01	ci left: 8.674162e-05	ci right 1.113103e-04	k: 255	n:2590000
Cons ci ratio: 6.720309e-02	ci left: 1.267871e-03	ci right 1.356416e-03	k: 3397	n:2590000
KS ci ratio: 6.286031e-02	ci left: 1.452093e-03	ci right 1.546711e-03	k: 3882	n:2590000
PCBP1   2590000 perm   2811 sec   (921 perm/sec)   p_kst 1.498842e-03   p_cons 1.311583e-03   p_joint 9.845560e-05

Joint ci ratio: 2.435648e-01	ci left: 8.749123e-05	ci right 1.121065e-04	k: 258	n:2600000
Cons ci ratio: 6.706506e-02	ci left: 1.268289e-03	ci right 1.356674e-03	k: 3411	n:2600000
KS ci ratio: 6.277958e-02	ci left: 1.450293e-03	ci right 1.544669e-03	k: 3892	n:2600000
PCBP1   2600000 perm   2832 sec   (918 perm/sec)   p_kst 1.496923e-03   p_cons 1.311923e-03   p_joint 9.923077e-05

Joint ci ratio: 2.435648e-01	ci left: 8.715601e-05	ci right 1.116770e-04	k: 258	n:2610000
Cons ci ratio: 6.692788e-02	ci left: 1.268704e-03	ci right 1.356929e-03	k: 3425	n:2610000
KS ci ratio: 6.263491e-02	ci left: 1.451525e-03	ci right 1.545755e-03	k: 3910	n:2610000
PCBP1   2610000 perm   2852 sec   (915 perm/sec)   p_kst 1.498084e-03   p_cons 1.312261e-03   p_joint 9.885057e-05

Joint ci ratio: 2.430960e-01	ci left: 8.718176e-05	ci right 1.116557e-04	k: 259	n:2620000
Cons ci ratio: 6.677211e-02	ci left: 1.269867e-03	ci right 1.357959e-03	k: 3441	n:2620000
KS ci ratio: 6.247531e-02	ci left: 1.453499e-03	ci right 1.547608e-03	k: 3930	n:2620000
PCBP1   2620000 perm   2872 sec   (912 perm/sec)   p_kst 1.500000e-03   p_cons 1.313359e-03   p_joint 9.885496e-05

Joint ci ratio: 2.426298e-01	ci left: 8.720737e-05	ci right 1.116344e-04	k: 260	n:2630000
Cons ci ratio: 6.663672e-02	ci left: 1.270273e-03	ci right 1.358208e-03	k: 3455	n:2630000
KS ci ratio: 6.227747e-02	ci left: 1.457330e-03	ci right 1.551377e-03	k: 3955	n:2630000
PCBP1   2630000 perm   2892 sec   (909 perm/sec)   p_kst 1.503802e-03   p_cons 1.313688e-03   p_joint 9.885932e-05

Joint ci ratio: 2.421663e-01	ci left: 8.723282e-05	ci right 1.116133e-04	k: 261	n:2640000
Cons ci ratio: 6.656941e-02	ci left: 1.268068e-03	ci right 1.355759e-03	k: 3462	n:2640000
KS ci ratio: 6.210494e-02	ci left: 1.460014e-03	ci right 1.553964e-03	k: 3977	n:2640000
PCBP1   2640000 perm   2913 sec   (906 perm/sec)   p_kst 1.506439e-03   p_cons 1.311364e-03   p_joint 9.886364e-05

Joint ci ratio: 2.407916e-01	ci left: 8.796722e-05	ci right 1.123926e-04	k: 264	n:2650000
Cons ci ratio: 6.644481e-02	ci left: 1.268107e-03	ci right 1.355630e-03	k: 3475	n:2650000
KS ci ratio: 6.199596e-02	ci left: 1.459705e-03	ci right 1.553465e-03	k: 3991	n:2650000
PCBP1   2650000 perm   2933 sec   (903 perm/sec)   p_kst 1.506038e-03   p_cons 1.311321e-03   p_joint 9.962264e-05

Joint ci ratio: 2.403386e-01	ci left: 8.798980e-05	ci right 1.123686e-04	k: 265	n:2660000
Cons ci ratio: 6.628288e-02	ci left: 1.269625e-03	ci right 1.357031e-03	k: 3492	n:2660000
KS ci ratio: 6.190302e-02	ci left: 1.458659e-03	ci right 1.552206e-03	k: 4003	n:2660000
PCBP1   2660000 perm   2954 sec   (901 perm/sec)   p_kst 1.504887e-03   p_cons 1.312782e-03   p_joint 9.962406e-05

Joint ci ratio: 2.403386e-01	ci left: 8.766025e-05	ci right 1.119478e-04	k: 265	n:2670000
Cons ci ratio: 6.610327e-02	ci left: 1.271868e-03	ci right 1.359182e-03	k: 3511	n:2670000
KS ci ratio: 6.174125e-02	ci left: 1.460940e-03	ci right 1.554379e-03	k: 4024	n:2670000
PCBP1   2670000 perm   2974 sec   (898 perm/sec)   p_kst 1.507116e-03   p_cons 1.314981e-03   p_joint 9.925094e-05

Joint ci ratio: 2.398881e-01	ci left: 8.768384e-05	ci right 1.119256e-04	k: 266	n:2680000
Cons ci ratio: 6.596253e-02	ci left: 1.272627e-03	ci right 1.359800e-03	k: 3526	n:2680000
KS ci ratio: 6.159600e-02	ci left: 1.462469e-03	ci right 1.555778e-03	k: 4043	n:2680000
PCBP1   2680000 perm   2995 sec   (895 perm/sec)   p_kst 1.508582e-03   p_cons 1.315672e-03   p_joint 9.925373e-05

Joint ci ratio: 2.389946e-01	ci left: 8.805678e-05	ci right 1.122975e-04	k: 268	n:2690000
Cons ci ratio: 6.583199e-02	ci left: 1.273015e-03	ci right 1.360035e-03	k: 3540	n:2690000
KS ci ratio: 6.146692e-02	ci left: 1.463254e-03	ci right 1.556411e-03	k: 4060	n:2690000
PCBP1   2690000 perm   3015 sec   (892 perm/sec)   p_kst 1.509294e-03   p_cons 1.315985e-03   p_joint 9.962825e-05

Joint ci ratio: 2.385516e-01	ci left: 8.807885e-05	ci right 1.122741e-04	k: 269	n:2700000
Cons ci ratio: 6.573927e-02	ci left: 1.271942e-03	ci right 1.358762e-03	k: 3550	n:2700000
KS ci ratio: 6.135371e-02	ci left: 1.463305e-03	ci right 1.556288e-03	k: 4075	n:2700000
PCBP1   2700000 perm   3036 sec   (889 perm/sec)   p_kst 1.509259e-03   p_cons 1.314815e-03   p_joint 9.962963e-05

Joint ci ratio: 2.381111e-01	ci left: 8.810081e-05	ci right 1.122508e-04	k: 270	n:2710000
Cons ci ratio: 6.562849e-02	ci left: 1.271604e-03	ci right 1.358249e-03	k: 3562	n:2710000
KS ci ratio: 6.127114e-02	ci left: 1.461902e-03	ci right 1.554666e-03	k: 4086	n:2710000
PCBP1   2710000 perm   3057 sec   (887 perm/sec)   p_kst 1.507749e-03   p_cons 1.314391e-03   p_joint 9.963100e-05

Joint ci ratio: 2.381111e-01	ci left: 8.777691e-05	ci right 1.118381e-04	k: 270	n:2720000
Cons ci ratio: 6.547243e-02	ci left: 1.273077e-03	ci right 1.359608e-03	k: 3579	n:2720000
KS ci ratio: 6.114408e-02	ci left: 1.462682e-03	ci right 1.555296e-03	k: 4103	n:2720000
PCBP1   2720000 perm   3078 sec   (884 perm/sec)   p_kst 1.508456e-03   p_cons 1.315809e-03   p_joint 9.926471e-05

Joint ci ratio: 2.376730e-01	ci left: 8.779985e-05	ci right 1.118165e-04	k: 271	n:2730000
Cons ci ratio: 6.536299e-02	ci left: 1.272737e-03	ci right 1.359095e-03	k: 3591	n:2730000
KS ci ratio: 6.101040e-02	ci left: 1.463817e-03	ci right 1.556293e-03	k: 4121	n:2730000
PCBP1   2730000 perm   3099 sec   (881 perm/sec)   p_kst 1.509524e-03   p_cons 1.315385e-03   p_joint 9.926740e-05

Joint ci ratio: 2.372373e-01	ci left: 8.782266e-05	ci right 1.117951e-04	k: 272	n:2740000
Cons ci ratio: 6.522692e-02	ci left: 1.273477e-03	ci right 1.359699e-03	k: 3606	n:2740000
KS ci ratio: 6.091444e-02	ci left: 1.463147e-03	ci right 1.555430e-03	k: 4134	n:2740000
PCBP1   2740000 perm   3121 sec   (878 perm/sec)   p_kst 1.508759e-03   p_cons 1.316058e-03   p_joint 9.927007e-05

Joint ci ratio: 2.372374e-01	ci left: 8.750331e-05	ci right 1.113885e-04	k: 272	n:2750000
Cons ci ratio: 6.510069e-02	ci left: 1.273854e-03	ci right 1.359928e-03	k: 3620	n:2750000
KS ci ratio: 6.079692e-02	ci left: 1.463556e-03	ci right 1.555681e-03	k: 4150	n:2750000
PCBP1   2750000 perm   3142 sec   (875 perm/sec)   p_kst 1.509091e-03   p_cons 1.316364e-03   p_joint 9.890909e-05

Joint ci ratio: 2.372374e-01	ci left: 8.718626e-05	ci right 1.109850e-04	k: 272	n:2760000
Cons ci ratio: 6.499310e-02	ci left: 1.273516e-03	ci right 1.359420e-03	k: 3632	n:2760000
KS ci ratio: 6.070197e-02	ci left: 1.462892e-03	ci right 1.554826e-03	k: 4163	n:2760000
PCBP1   2760000 perm   3164 sec   (872 perm/sec)   p_kst 1.508333e-03   p_cons 1.315942e-03   p_joint 9.855072e-05

Joint ci ratio: 2.372375e-01	ci left: 8.687151e-05	ci right 1.105843e-04	k: 272	n:2770000
Cons ci ratio: 6.492172e-02	ci left: 1.271760e-03	ci right 1.357447e-03	k: 3640	n:2770000
KS ci ratio: 6.062199e-02	ci left: 1.461521e-03	ci right 1.553244e-03	k: 4174	n:2770000
PCBP1   2770000 perm   3185 sec   (870 perm/sec)   p_kst 1.506859e-03   p_cons 1.314079e-03   p_joint 9.819495e-05

Joint ci ratio: 2.363732e-01	ci left: 8.723577e-05	ci right 1.109485e-04	k: 274	n:2780000
Cons ci ratio: 6.477065e-02	ci left: 1.273201e-03	ci right 1.358778e-03	k: 3657	n:2780000
KS ci ratio: 6.050615e-02	ci left: 1.461932e-03	ci right 1.553499e-03	k: 4190	n:2780000
PCBP1   2780000 perm   3207 sec   (867 perm/sec)   p_kst 1.507194e-03   p_cons 1.315468e-03   p_joint 9.856115e-05

Joint ci ratio: 2.355182e-01	ci left: 8.759757e-05	ci right 1.113100e-04	k: 276	n:2790000
Cons ci ratio: 6.463823e-02	ci left: 1.273927e-03	ci right 1.359371e-03	k: 3672	n:2790000
KS ci ratio: 6.039098e-02	ci left: 1.462341e-03	ci right 1.553753e-03	k: 4206	n:2790000
PCBP1   2790000 perm   3228 sec   (864 perm/sec)   p_kst 1.507527e-03   p_cons 1.316129e-03   p_joint 9.892473e-05

Joint ci ratio: 2.355183e-01	ci left: 8.728472e-05	ci right 1.109125e-04	k: 276	n:2800000
Cons ci ratio: 6.449787e-02	ci left: 1.274999e-03	ci right 1.360323e-03	k: 3688	n:2800000
KS ci ratio: 6.034088e-02	ci left: 1.459580e-03	ci right 1.550741e-03	k: 4213	n:2800000
PCBP1   2800000 perm   3250 sec   (862 perm/sec)   p_kst 1.504643e-03   p_cons 1.317143e-03   p_joint 9.857143e-05

Joint ci ratio: 2.346726e-01	ci left: 8.764393e-05	ci right 1.112714e-04	k: 278	n:2810000
Cons ci ratio: 6.439324e-02	ci left: 1.274664e-03	ci right 1.359821e-03	k: 3700	n:2810000
KS ci ratio: 6.026947e-02	ci left: 1.457891e-03	ci right 1.548835e-03	k: 4223	n:2810000
PCBP1   2810000 perm   3271 sec   (859 perm/sec)   p_kst 1.502847e-03   p_cons 1.316726e-03   p_joint 9.893238e-05

Joint ci ratio: 2.342531e-01	ci left: 8.766691e-05	ci right 1.112522e-04	k: 279	n:2820000
Cons ci ratio: 6.429778e-02	ci left: 1.273981e-03	ci right 1.358963e-03	k: 3711	n:2820000
KS ci ratio: 6.016985e-02	ci left: 1.457611e-03	ci right 1.548382e-03	k: 4237	n:2820000
PCBP1   2820000 perm   3293 sec   (856 perm/sec)   p_kst 1.502482e-03   p_cons 1.315957e-03   p_joint 9.893617e-05

Joint ci ratio: 2.342532e-01	ci left: 8.735713e-05	ci right 1.108591e-04	k: 279	n:2830000
Cons ci ratio: 6.421138e-02	ci left: 1.272957e-03	ci right 1.357751e-03	k: 3721	n:2830000
KS ci ratio: 6.005658e-02	ci left: 1.458029e-03	ci right 1.548650e-03	k: 4253	n:2830000
PCBP1   2830000 perm   3315 sec   (854 perm/sec)   p_kst 1.502827e-03   p_cons 1.314841e-03   p_joint 9.858657e-05

Joint ci ratio: 2.338360e-01	ci left: 8.738101e-05	ci right 1.108414e-04	k: 280	n:2840000
Cons ci ratio: 6.413394e-02	ci left: 1.271592e-03	ci right 1.356190e-03	k: 3730	n:2840000
KS ci ratio: 5.994395e-02	ci left: 1.458445e-03	ci right 1.548915e-03	k: 4269	n:2840000
PCBP1   2840000 perm   3337 sec   (851 perm/sec)   p_kst 1.503169e-03   p_cons 1.313380e-03   p_joint 9.859155e-05

Joint ci ratio: 2.338360e-01	ci left: 8.707440e-05	ci right 1.104525e-04	k: 280	n:2850000
Cons ci ratio: 6.403106e-02	ci left: 1.271274e-03	ci right 1.355710e-03	k: 3742	n:2850000
KS ci ratio: 5.985292e-02	ci left: 1.457820e-03	ci right 1.548110e-03	k: 4282	n:2850000
PCBP1   2850000 perm   3359 sec   (849 perm/sec)   p_kst 1.502456e-03   p_cons 1.312982e-03   p_joint 9.824561e-05

Joint ci ratio: 2.338361e-01	ci left: 8.676995e-05	ci right 1.100663e-04	k: 280	n:2860000
Cons ci ratio: 6.392016e-02	ci left: 1.271301e-03	ci right 1.355588e-03	k: 3755	n:2860000
KS ci ratio: 5.974839e-02	ci left: 1.457889e-03	ci right 1.548020e-03	k: 4297	n:2860000
PCBP1   2860000 perm   3381 sec   (846 perm/sec)   p_kst 1.502448e-03   p_cons 1.312937e-03   p_joint 9.790210e-05

Joint ci ratio: 2.334211e-01	ci left: 8.679565e-05	ci right 1.100516e-04	k: 281	n:2870000
Cons ci ratio: 6.380983e-02	ci left: 1.271329e-03	ci right 1.355466e-03	k: 3768	n:2870000
KS ci ratio: 5.963056e-02	ci left: 1.458645e-03	ci right 1.548638e-03	k: 4314	n:2870000
PCBP1   2870000 perm   3403 sec   (843 perm/sec)   p_kst 1.503136e-03   p_cons 1.312892e-03   p_joint 9.790941e-05

Joint ci ratio: 2.330083e-01	ci left: 8.682121e-05	ci right 1.100370e-04	k: 282	n:2880000
Cons ci ratio: 6.366636e-02	ci left: 1.272724e-03	ci right 1.356756e-03	k: 3785	n:2880000
KS ci ratio: 5.952718e-02	ci left: 1.458711e-03	ci right 1.548547e-03	k: 4329	n:2880000
PCBP1   2880000 perm   3425 sec   (841 perm/sec)   p_kst 1.503125e-03   p_cons 1.314236e-03   p_joint 9.791667e-05

Joint ci ratio: 2.330084e-01	ci left: 8.652079e-05	ci right 1.096562e-04	k: 282	n:2890000
Cons ci ratio: 6.358248e-02	ci left: 1.271725e-03	ci right 1.355577e-03	k: 3795	n:2890000
KS ci ratio: 5.944490e-02	ci left: 1.457754e-03	ci right 1.547402e-03	k: 4341	n:2890000
PCBP1   2890000 perm   3447 sec   (838 perm/sec)   p_kst 1.502076e-03   p_cons 1.313149e-03   p_joint 9.757785e-05

Joint ci ratio: 2.325978e-01	ci left: 8.654716e-05	ci right 1.096430e-04	k: 283	n:2900000
Cons ci ratio: 6.346555e-02	ci left: 1.272090e-03	ci right 1.355807e-03	k: 3809	n:2900000
KS ci ratio: 5.934248e-02	ci left: 1.457822e-03	ci right 1.547316e-03	k: 4356	n:2900000
PCBP1   2900000 perm   3469 sec   (836 perm/sec)   p_kst 1.502069e-03   p_cons 1.313448e-03   p_joint 9.758621e-05

Joint ci ratio: 2.350947e-01	ci left: 8.430867e-05	ci right 1.070838e-04	k: 277	n:2910000
Cons ci ratio: 6.334096e-02	ci left: 1.272792e-03	ci right 1.356384e-03	k: 3824	n:2910000
KS ci ratio: 5.921347e-02	ci left: 1.459245e-03	ci right 1.548624e-03	k: 4375	n:2910000
PCBP1   2910000 perm   3491 sec   (834 perm/sec)   p_kst 1.503436e-03   p_cons 1.314089e-03   p_joint 9.518900e-05

Joint ci ratio: 2.338363e-01	ci left: 8.498699e-05	ci right 1.078047e-04	k: 280	n:2920000
Cons ci ratio: 6.321711e-02	ci left: 1.273489e-03	ci right 1.356957e-03	k: 3839	n:2920000
KS ci ratio: 5.911225e-02	ci left: 1.459309e-03	ci right 1.548534e-03	k: 4390	n:2920000
PCBP1   2920000 perm   3514 sec   (831 perm/sec)   p_kst 1.503425e-03   p_cons 1.314726e-03   p_joint 9.589041e-05

Joint ci ratio: 2.338363e-01	ci left: 8.469693e-05	ci right 1.074368e-04	k: 280	n:2930000
Cons ci ratio: 6.311037e-02	ci left: 1.273509e-03	ci right 1.356833e-03	k: 3852	n:2930000
KS ci ratio: 5.900484e-02	ci left: 1.459708e-03	ci right 1.548790e-03	k: 4406	n:2930000
PCBP1   2930000 perm   3536 sec   (829 perm/sec)   p_kst 1.503754e-03   p_cons 1.314676e-03   p_joint 9.556314e-05

Joint ci ratio: 2.330086e-01	ci left: 8.504934e-05	ci right 1.077913e-04	k: 282	n:2940000
Cons ci ratio: 6.294714e-02	ci left: 1.275873e-03	ci right 1.359128e-03	k: 3872	n:2940000
KS ci ratio: 5.889801e-02	ci left: 1.460105e-03	ci right 1.549044e-03	k: 4422	n:2940000
PCBP1   2940000 perm   3559 sec   (826 perm/sec)   p_kst 1.504082e-03   p_cons 1.317007e-03   p_joint 9.591837e-05

Joint ci ratio: 2.321895e-01	ci left: 8.539950e-05	ci right 1.081433e-04	k: 284	n:2950000
Cons ci ratio: 6.280940e-02	ci left: 1.277220e-03	ci right 1.360374e-03	k: 3889	n:2950000
KS ci ratio: 5.883823e-02	ci left: 1.458162e-03	ci right 1.546889e-03	k: 4431	n:2950000
PCBP1   2950000 perm   3581 sec   (824 perm/sec)   p_kst 1.502034e-03   p_cons 1.318305e-03   p_joint 9.627119e-05

Joint ci ratio: 2.321895e-01	ci left: 8.511099e-05	ci right 1.077780e-04	k: 284	n:2960000
Cons ci ratio: 6.263245e-02	ci left: 1.280221e-03	ci right 1.363327e-03	k: 3911	n:2960000
KS ci ratio: 5.871909e-02	ci left: 1.459227e-03	ci right 1.547834e-03	k: 4449	n:2960000
PCBP1   2960000 perm   3604 sec   (821 perm/sec)   p_kst 1.503041e-03   p_cons 1.321284e-03   p_joint 9.594595e-05

Joint ci ratio: 2.313791e-01	ci left: 8.545872e-05	ci right 1.081275e-04	k: 286	n:2970000
Cons ci ratio: 6.256057e-02	ci left: 1.278894e-03	ci right 1.361814e-03	k: 3920	n:2970000
KS ci ratio: 5.864010e-02	ci left: 1.458295e-03	ci right 1.546722e-03	k: 4461	n:2970000
PCBP1   2970000 perm   3627 sec   (819 perm/sec)   p_kst 1.502020e-03   p_cons 1.319865e-03   p_joint 9.629630e-05

Joint ci ratio: 2.309770e-01	ci left: 8.548809e-05	ci right 1.081197e-04	k: 287	n:2980000
Cons ci ratio: 6.243329e-02	ci left: 1.279887e-03	ci right 1.362697e-03	k: 3936	n:2980000
KS ci ratio: 5.852870e-02	ci left: 1.459023e-03	ci right 1.547320e-03	k: 4478	n:2980000
PCBP1   2980000 perm   3649 sec   (817 perm/sec)   p_kst 1.502685e-03   p_cons 1.320805e-03   p_joint 9.630872e-05

Joint ci ratio: 2.334216e-01	ci left: 8.331220e-05	ci right 1.056349e-04	k: 281	n:2990000
Cons ci ratio: 6.232257e-02	ci left: 1.280216e-03	ci right 1.362895e-03	k: 3950	n:2990000
KS ci ratio: 5.844396e-02	ci left: 1.458427e-03	ci right 1.546556e-03	k: 4491	n:2990000
PCBP1   2990000 perm   3673 sec   (814 perm/sec)   p_kst 1.502007e-03   p_cons 1.321070e-03   p_joint 9.397993e-05

Joint ci ratio: 2.330088e-01	ci left: 8.334835e-05	ci right 1.056355e-04	k: 282	n:3000000
Cons ci ratio: 6.220458e-02	ci left: 1.280871e-03	ci right 1.363430e-03	k: 3965	n:3000000
KS ci ratio: 5.833366e-02	ci left: 1.459150e-03	ci right 1.547150e-03	k: 4508	n:3000000
PCBP1   3000000 perm   3695 sec   (812 perm/sec)   p_kst 1.502667e-03   p_cons 1.321667e-03   p_joint 9.400000e-05

Joint ci ratio: 2.321897e-01	ci left: 8.369718e-05	ci right 1.059877e-04	k: 284	n:3010000
Cons ci ratio: 6.211852e-02	ci left: 1.280213e-03	ci right 1.362612e-03	k: 3976	n:3010000
KS ci ratio: 5.826268e-02	ci left: 1.457903e-03	ci right 1.545718e-03	k: 4519	n:3010000
PCBP1   3010000 perm   3719 sec   (809 perm/sec)   p_kst 1.501329e-03   p_cons 1.320930e-03   p_joint 9.435216e-05

Joint ci ratio: 2.321898e-01	ci left: 8.342003e-05	ci right 1.056367e-04	k: 284	n:3020000
Cons ci ratio: 6.204840e-02	ci left: 1.278908e-03	ci right 1.361126e-03	k: 3985	n:3020000
KS ci ratio: 5.823058e-02	ci left: 1.454707e-03	ci right 1.542280e-03	k: 4524	n:3020000
PCBP1   3020000 perm   3742 sec   (807 perm/sec)   p_kst 1.498013e-03   p_cons 1.319536e-03   p_joint 9.403974e-05

Joint ci ratio: 2.355192e-01	ci left: 8.065911e-05	ci right 1.024934e-04	k: 276	n:3030000
Cons ci ratio: 6.195522e-02	ci left: 1.278586e-03	ci right 1.360656e-03	k: 3997	n:3030000
KS ci ratio: 5.815355e-02	ci left: 1.453809e-03	ci right 1.541208e-03	k: 4536	n:3030000
PCBP1   3030000 perm   3765 sec   (805 perm/sec)   p_kst 1.497030e-03   p_cons 1.319142e-03   p_joint 9.108911e-05

Joint ci ratio: 2.355192e-01	ci left: 8.039379e-05	ci right 1.021563e-04	k: 276	n:3040000
Cons ci ratio: 6.180846e-02	ci left: 1.280533e-03	ci right 1.362527e-03	k: 4016	n:3040000
KS ci ratio: 5.801300e-02	ci left: 1.456158e-03	ci right 1.543480e-03	k: 4558	n:3040000
PCBP1   3040000 perm   3788 sec   (803 perm/sec)   p_kst 1.499342e-03   p_cons 1.321053e-03   p_joint 9.078947e-05

Joint ci ratio: 2.350952e-01	ci left: 8.043874e-05	ci right 1.021685e-04	k: 277	n:3050000
Cons ci ratio: 6.171636e-02	ci left: 1.280209e-03	ci right 1.362054e-03	k: 4028	n:3050000
KS ci ratio: 5.791780e-02	ci left: 1.456231e-03	ci right 1.543408e-03	k: 4573	n:3050000
PCBP1   3050000 perm   3811 sec   (800 perm/sec)   p_kst 1.499344e-03   p_cons 1.320656e-03   p_joint 9.081967e-05

Joint ci ratio: 2.350953e-01	ci left: 8.017587e-05	ci right 1.018346e-04	k: 277	n:3060000
Cons ci ratio: 6.166288e-02	ci left: 1.278277e-03	ci right 1.359926e-03	k: 4035	n:3060000
KS ci ratio: 5.781675e-02	ci left: 1.456625e-03	ci right 1.543669e-03	k: 4589	n:3060000
PCBP1   3060000 perm   3835 sec   (798 perm/sec)   p_kst 1.499673e-03   p_cons 1.318627e-03   p_joint 9.052288e-05

Joint ci ratio: 2.350953e-01	ci left: 7.991471e-05	ci right 1.015029e-04	k: 277	n:3070000
Cons ci ratio: 6.159429e-02	ci left: 1.277000e-03	ci right 1.358473e-03	k: 4044	n:3070000
KS ci ratio: 5.772879e-02	ci left: 1.456375e-03	ci right 1.543267e-03	k: 4603	n:3070000
PCBP1   3070000 perm   3859 sec   (796 perm/sec)   p_kst 1.499349e-03   p_cons 1.317264e-03   p_joint 9.022801e-05

Joint ci ratio: 2.346736e-01	ci left: 7.996082e-05	ci right 1.015171e-04	k: 278	n:3080000
Cons ci ratio: 6.147280e-02	ci left: 1.277969e-03	ci right 1.359337e-03	k: 4060	n:3080000
KS ci ratio: 5.762873e-02	ci left: 1.456766e-03	ci right 1.543526e-03	k: 4619	n:3080000
PCBP1   3080000 perm   3882 sec   (793 perm/sec)   p_kst 1.499675e-03   p_cons 1.318182e-03   p_joint 9.025974e-05

Joint ci ratio: 2.346736e-01	ci left: 7.970204e-05	ci right 1.011886e-04	k: 278	n:3090000
Cons ci ratio: 6.133697e-02	ci left: 1.279569e-03	ci right 1.360853e-03	k: 4078	n:3090000
KS ci ratio: 5.753540e-02	ci left: 1.456836e-03	ci right 1.543455e-03	k: 4634	n:3090000
PCBP1   3090000 perm   3905 sec   (791 perm/sec)   p_kst 1.499676e-03   p_cons 1.319741e-03   p_joint 8.996764e-05

Joint ci ratio: 2.338370e-01	ci left: 8.005224e-05	ci right 1.015451e-04	k: 280	n:3100000
Cons ci ratio: 6.120951e-02	ci left: 1.280841e-03	ci right 1.362031e-03	k: 4095	n:3100000
KS ci ratio: 5.744872e-02	ci left: 1.456588e-03	ci right 1.543057e-03	k: 4648	n:3100000
PCBP1   3100000 perm   3929 sec   (789 perm/sec)   p_kst 1.499355e-03   p_cons 1.320968e-03   p_joint 9.032258e-05

Joint ci ratio: 2.334220e-01	ci left: 8.009756e-05	ci right 1.015589e-04	k: 281	n:3110000
Cons ci ratio: 6.114988e-02	ci left: 1.279255e-03	ci right 1.360263e-03	k: 4103	n:3110000
KS ci ratio: 5.738708e-02	ci left: 1.455074e-03	ci right 1.541357e-03	k: 4658	n:3110000
PCBP1   3110000 perm   3953 sec   (787 perm/sec)   p_kst 1.497749e-03   p_cons 1.319293e-03   p_joint 9.035370e-05

Joint ci ratio: 2.334220e-01	ci left: 7.984084e-05	ci right 1.012334e-04	k: 281	n:3120000
Cons ci ratio: 6.103100e-02	ci left: 1.280205e-03	ci right 1.361110e-03	k: 4119	n:3120000
KS ci ratio: 5.731334e-02	ci left: 1.454201e-03	ci right 1.540318e-03	k: 4670	n:3120000
PCBP1   3120000 perm   3977 sec   (785 perm/sec)   p_kst 1.496795e-03   p_cons 1.320192e-03   p_joint 9.006410e-05

Joint ci ratio: 2.321902e-01	ci left: 8.048833e-05	ci right 1.019243e-04	k: 284	n:3130000
Cons ci ratio: 6.092756e-02	ci left: 1.280520e-03	ci right 1.361302e-03	k: 4133	n:3130000
KS ci ratio: 5.719099e-02	ci left: 1.455853e-03	ci right 1.541878e-03	k: 4690	n:3130000
PCBP1   3130000 perm   4000 sec   (782 perm/sec)   p_kst 1.498403e-03   p_cons 1.320447e-03   p_joint 9.073482e-05

Joint ci ratio: 2.321902e-01	ci left: 8.023199e-05	ci right 1.015997e-04	k: 284	n:3140000
Cons ci ratio: 6.080997e-02	ci left: 1.281460e-03	ci right 1.362140e-03	k: 4149	n:3140000
KS ci ratio: 5.715453e-02	ci left: 1.453100e-03	ci right 1.538906e-03	k: 4696	n:3140000
PCBP1   3140000 perm   4024 sec   (780 perm/sec)   p_kst 1.495541e-03   p_cons 1.321338e-03   p_joint 9.044586e-05

Joint ci ratio: 2.309776e-01	ci left: 8.087442e-05	ci right 1.022847e-04	k: 287	n:3150000
Cons ci ratio: 6.071495e-02	ci left: 1.281456e-03	ci right 1.362005e-03	k: 4162	n:3150000
KS ci ratio: 5.709383e-02	ci left: 1.451616e-03	ci right 1.537241e-03	k: 4706	n:3150000
PCBP1   3150000 perm   4048 sec   (778 perm/sec)   p_kst 1.493968e-03   p_cons 1.321270e-03   p_joint 9.111111e-05

Joint ci ratio: 2.301797e-01	ci left: 8.121485e-05	ci right 1.026304e-04	k: 289	n:3160000
Cons ci ratio: 6.062037e-02	ci left: 1.281452e-03	ci right 1.361871e-03	k: 4175	n:3160000
KS ci ratio: 5.701517e-02	ci left: 1.451078e-03	ci right 1.536549e-03	k: 4719	n:3160000
PCBP1   3160000 perm   4072 sec   (776 perm/sec)   p_kst 1.493354e-03   p_cons 1.321203e-03   p_joint 9.145570e-05

Joint ci ratio: 4.328859e-01	ci left: 2.029207e-05	ci right 3.175877e-05	k: 81	n:3170000
Cons ci ratio: 6.054795e-02	ci left: 1.280516e-03	ci right 1.360778e-03	k: 4185	n:3170000
KS ci ratio: 5.581427e-02	ci left: 1.510258e-03	ci right 1.597281e-03	k: 4924	n:3170000
PCBP1   3170000 perm   4096 sec   (774 perm/sec)   p_kst 1.553312e-03   p_cons 1.320189e-03   p_joint 2.555205e-05

Joint ci ratio: 4.302702e-01	ci left: 2.050855e-05	ci right 3.200733e-05	k: 82	n:3180000
Cons ci ratio: 6.046857e-02	ci left: 1.279896e-03	ci right 1.360010e-03	k: 4196	n:3180000
KS ci ratio: 5.570125e-02	ci left: 1.511711e-03	ci right 1.598635e-03	k: 4944	n:3180000
PCBP1   3180000 perm   4120 sec   (772 perm/sec)   p_kst 1.554717e-03   p_cons 1.319497e-03   p_joint 2.578616e-05

Joint ci ratio: 4.302702e-01	ci left: 2.044426e-05	ci right 3.190699e-05	k: 82	n:3190000
Cons ci ratio: 6.040388e-02	ci left: 1.278663e-03	ci right 1.358611e-03	k: 4205	n:3190000
KS ci ratio: 5.556649e-02	ci left: 1.514391e-03	ci right 1.601252e-03	k: 4968	n:3190000
PCBP1   3190000 perm   4145 sec   (770 perm/sec)   p_kst 1.557367e-03   p_cons 1.318182e-03   p_joint 2.570533e-05

Joint ci ratio: 4.302703e-01	ci left: 2.038037e-05	ci right 3.180728e-05	k: 82	n:3200000
Cons ci ratio: 6.030360e-02	ci left: 1.278976e-03	ci right 1.358806e-03	k: 4219	n:3200000
KS ci ratio: 5.546610e-02	ci left: 1.515205e-03	ci right 1.601951e-03	k: 4986	n:3200000
PCBP1   3200000 perm   4169 sec   (768 perm/sec)   p_kst 1.558125e-03   p_cons 1.318437e-03   p_joint 2.562500e-05

Joint ci ratio: 4.302703e-01	ci left: 2.031688e-05	ci right 3.170820e-05	k: 82	n:3210000
Cons ci ratio: 6.013274e-02	ci left: 1.282356e-03	ci right 1.362162e-03	k: 4243	n:3210000
KS ci ratio: 5.538288e-02	ci left: 1.515093e-03	ci right 1.601698e-03	k: 5001	n:3210000
PCBP1   3210000 perm   4193 sec   (766 perm/sec)   p_kst 1.557944e-03   p_cons 1.321807e-03   p_joint 2.554517e-05

Joint ci ratio: 4.302703e-01	ci left: 2.025379e-05	ci right 3.160972e-05	k: 82	n:3220000
Cons ci ratio: 6.004086e-02	ci left: 1.282350e-03	ci right 1.362030e-03	k: 4256	n:3220000
KS ci ratio: 5.528899e-02	ci left: 1.515594e-03	ci right 1.602076e-03	k: 5018	n:3220000
PCBP1   3220000 perm   4217 sec   (764 perm/sec)   p_kst 1.558385e-03   p_cons 1.321739e-03   p_joint 2.546584e-05

Joint ci ratio: 4.302703e-01	ci left: 2.019108e-05	ci right 3.151186e-05	k: 82	n:3230000
Cons ci ratio: 5.992130e-02	ci left: 1.283564e-03	ci right 1.363155e-03	k: 4273	n:3230000
KS ci ratio: 5.522854e-02	ci left: 1.514261e-03	ci right 1.600569e-03	k: 5029	n:3230000
PCBP1   3230000 perm   4242 sec   (762 perm/sec)   p_kst 1.556966e-03   p_cons 1.322910e-03   p_joint 2.538700e-05

Joint ci ratio: 4.302703e-01	ci left: 2.012876e-05	ci right 3.141460e-05	k: 82	n:3240000
Cons ci ratio: 5.978850e-02	ci left: 1.285379e-03	ci right 1.364899e-03	k: 4292	n:3240000
KS ci ratio: 5.519023e-02	ci left: 1.511718e-03	ci right 1.597819e-03	k: 5036	n:3240000
PCBP1   3240000 perm   4266 sec   (760 perm/sec)   p_kst 1.554321e-03   p_cons 1.324691e-03   p_joint 2.530864e-05

Joint ci ratio: 4.277015e-01	ci left: 2.034129e-05	ci right 3.165867e-05	k: 83	n:3250000
Cons ci ratio: 5.969818e-02	ci left: 1.285364e-03	ci right 1.364760e-03	k: 4305	n:3250000
KS ci ratio: 5.512463e-02	ci left: 1.510707e-03	ci right 1.596646e-03	k: 5048	n:3250000
PCBP1   3250000 perm   4291 sec   (757 perm/sec)   p_kst 1.553231e-03   p_cons 1.324615e-03   p_joint 2.553846e-05

Joint ci ratio: 4.277015e-01	ci left: 2.027890e-05	ci right 3.156156e-05	k: 83	n:3260000
Cons ci ratio: 5.962901e-02	ci left: 1.284443e-03	ci right 1.363686e-03	k: 4315	n:3260000
KS ci ratio: 5.503749e-02	ci left: 1.510914e-03	ci right 1.596724e-03	k: 5064	n:3260000
PCBP1   3260000 perm   4316 sec   (755 perm/sec)   p_kst 1.553374e-03   p_cons 1.323620e-03   p_joint 2.546012e-05

Joint ci ratio: 4.251781e-01	ci left: 2.048986e-05	ci right 3.180349e-05	k: 84	n:3270000
Cons ci ratio: 5.953253e-02	ci left: 1.284732e-03	ci right 1.363861e-03	k: 4329	n:3270000
KS ci ratio: 5.491289e-02	ci left: 1.513230e-03	ci right 1.598971e-03	k: 5087	n:3270000
PCBP1   3270000 perm   4340 sec   (753 perm/sec)   p_kst 1.555657e-03   p_cons 1.323853e-03   p_joint 2.568807e-05

Joint ci ratio: 4.251781e-01	ci left: 2.042739e-05	ci right 3.170652e-05	k: 84	n:3280000
Cons ci ratio: 5.945022e-02	ci left: 1.284420e-03	ci right 1.363416e-03	k: 4341	n:3280000
KS ci ratio: 5.480525e-02	ci left: 1.514631e-03	ci right 1.600278e-03	k: 5107	n:3280000
PCBP1   3280000 perm   4365 sec   (751 perm/sec)   p_kst 1.557012e-03   p_cons 1.323476e-03   p_joint 2.560976e-05

Joint ci ratio: 4.226989e-01	ci left: 2.063682e-05	ci right 3.194635e-05	k: 85	n:3290000
Cons ci ratio: 5.938874e-02	ci left: 1.283211e-03	ci right 1.362048e-03	k: 4350	n:3290000
KS ci ratio: 5.471961e-02	ci left: 1.514824e-03	ci right 1.600343e-03	k: 5123	n:3290000
PCBP1   3290000 perm   4390 sec   (749 perm/sec)   p_kst 1.557143e-03   p_cons 1.322188e-03   p_joint 2.583587e-05

Joint ci ratio: 4.226989e-01	ci left: 2.057429e-05	ci right 3.184954e-05	k: 85	n:3300000
Cons ci ratio: 5.929341e-02	ci left: 1.283502e-03	ci right 1.362226e-03	k: 4364	n:3300000
KS ci ratio: 5.467701e-02	ci left: 1.512624e-03	ci right 1.597951e-03	k: 5131	n:3300000
PCBP1   3300000 perm   4415 sec   (747 perm/sec)   p_kst 1.554848e-03   p_cons 1.322424e-03   p_joint 2.575758e-05

Joint ci ratio: 4.226989e-01	ci left: 2.051213e-05	ci right 3.175332e-05	k: 85	n:3310000
Cons ci ratio: 5.921886e-02	ci left: 1.282898e-03	ci right 1.361483e-03	k: 4375	n:3310000
KS ci ratio: 5.460791e-02	ci left: 1.511928e-03	ci right 1.597105e-03	k: 5144	n:3310000
PCBP1   3310000 perm   4440 sec   (745 perm/sec)   p_kst 1.554079e-03   p_cons 1.321752e-03   p_joint 2.567976e-05

Joint ci ratio: 4.226989e-01	ci left: 2.045035e-05	ci right 3.165768e-05	k: 85	n:3320000
Cons ci ratio: 5.916485e-02	ci left: 1.281408e-03	ci right 1.359828e-03	k: 4383	n:3320000
KS ci ratio: 5.450732e-02	ci left: 1.513019e-03	ci right 1.598095e-03	k: 5163	n:3320000
PCBP1   3320000 perm   4465 sec   (743 perm/sec)   p_kst 1.555120e-03   p_cons 1.320181e-03   p_joint 2.560241e-05

Joint ci ratio: 4.202626e-01	ci left: 2.065738e-05	ci right 3.189459e-05	k: 86	n:3330000
Cons ci ratio: 5.907733e-02	ci left: 1.281406e-03	ci right 1.359706e-03	k: 4396	n:3330000
KS ci ratio: 5.443887e-02	ci left: 1.512326e-03	ci right 1.597253e-03	k: 5176	n:3330000
PCBP1   3330000 perm   4491 sec   (742 perm/sec)   p_kst 1.554354e-03   p_cons 1.320120e-03   p_joint 2.582583e-05

Joint ci ratio: 4.178678e-01	ci left: 2.086335e-05	ci right 3.212990e-05	k: 87	n:3340000
Cons ci ratio: 5.896342e-02	ci left: 1.282584e-03	ci right 1.360800e-03	k: 4413	n:3340000
KS ci ratio: 5.438116e-02	ci left: 1.511047e-03	ci right 1.595809e-03	k: 5187	n:3340000
PCBP1   3340000 perm   4515 sec   (740 perm/sec)   p_kst 1.552994e-03   p_cons 1.321257e-03   p_joint 2.604790e-05

Joint ci ratio: 4.178679e-01	ci left: 2.080108e-05	ci right 3.203399e-05	k: 87	n:3350000
Cons ci ratio: 5.884352e-02	ci left: 1.284049e-03	ci right 1.362190e-03	k: 4431	n:3350000
KS ci ratio: 5.428705e-02	ci left: 1.511836e-03	ci right 1.596492e-03	k: 5205	n:3350000
PCBP1   3350000 perm   4541 sec   (738 perm/sec)   p_kst 1.553731e-03   p_cons 1.322687e-03   p_joint 2.597015e-05

Joint ci ratio: 4.155136e-01	ci left: 2.100558e-05	ci right 3.226730e-05	k: 88	n:3360000
Cons ci ratio: 5.877728e-02	ci left: 1.283160e-03	ci right 1.361156e-03	k: 4441	n:3360000
KS ci ratio: 5.420901e-02	ci left: 1.511741e-03	ci right 1.596265e-03	k: 5220	n:3360000
PCBP1   3360000 perm   4567 sec   (736 perm/sec)   p_kst 1.553571e-03   p_cons 1.321726e-03   p_joint 2.619048e-05

Joint ci ratio: 4.155136e-01	ci left: 2.094325e-05	ci right 3.217155e-05	k: 88	n:3370000
Cons ci ratio: 5.868486e-02	ci left: 1.283446e-03	ci right 1.361332e-03	k: 4455	n:3370000
KS ci ratio: 5.413649e-02	ci left: 1.511353e-03	ci right 1.595739e-03	k: 5234	n:3370000
PCBP1   3370000 perm   4592 sec   (734 perm/sec)   p_kst 1.553116e-03   p_cons 1.321958e-03   p_joint 2.611276e-05

Joint ci ratio: 4.155136e-01	ci left: 2.088129e-05	ci right 3.207637e-05	k: 88	n:3380000
Cons ci ratio: 5.857976e-02	ci left: 1.284313e-03	ci right 1.362107e-03	k: 4471	n:3380000
KS ci ratio: 5.406942e-02	ci left: 1.510675e-03	ci right 1.594916e-03	k: 5247	n:3380000
PCBP1   3380000 perm   4618 sec   (732 perm/sec)   p_kst 1.552367e-03   p_cons 1.322781e-03   p_joint 2.603550e-05

Joint ci ratio: 4.251783e-01	ci left: 1.976456e-05	ci right 3.067770e-05	k: 84	n:3390000
Cons ci ratio: 5.848828e-02	ci left: 1.284594e-03	ci right 1.362279e-03	k: 4485	n:3390000
KS ci ratio: 5.396152e-02	ci left: 1.512330e-03	ci right 1.596489e-03	k: 5268	n:3390000
PCBP1   3390000 perm   4643 sec   (730 perm/sec)   p_kst 1.553982e-03   p_cons 1.323009e-03   p_joint 2.477876e-05

Joint ci ratio: 4.251783e-01	ci left: 1.970643e-05	ci right 3.058747e-05	k: 84	n:3400000
Cons ci ratio: 5.837774e-02	ci left: 1.285743e-03	ci right 1.363346e-03	k: 4502	n:3400000
KS ci ratio: 5.387466e-02	ci left: 1.512815e-03	ci right 1.596861e-03	k: 5285	n:3400000
PCBP1   3400000 perm   4669 sec   (728 perm/sec)   p_kst 1.554412e-03   p_cons 1.324118e-03   p_joint 2.470588e-05

Joint ci ratio: 4.251783e-01	ci left: 1.964864e-05	ci right 3.049777e-05	k: 84	n:3410000
Cons ci ratio: 5.828073e-02	ci left: 1.286307e-03	ci right 1.363811e-03	k: 4517	n:3410000
KS ci ratio: 5.381364e-02	ci left: 1.511850e-03	ci right 1.595745e-03	k: 5297	n:3410000
PCBP1   3410000 perm   4695 sec   (726 perm/sec)   p_kst 1.553372e-03   p_cons 1.324633e-03   p_joint 2.463343e-05

Joint ci ratio: 4.251784e-01	ci left: 1.959118e-05	ci right 3.040860e-05	k: 84	n:3420000
Cons ci ratio: 5.819064e-02	ci left: 1.286580e-03	ci right 1.363976e-03	k: 4531	n:3420000
KS ci ratio: 5.376297e-02	ci left: 1.510314e-03	ci right 1.594042e-03	k: 5307	n:3420000
PCBP1   3420000 perm   4721 sec   (724 perm/sec)   p_kst 1.551754e-03   p_cons 1.324854e-03   p_joint 2.456140e-05

Joint ci ratio: 4.251784e-01	ci left: 1.953407e-05	ci right 3.031995e-05	k: 84	n:3430000
Cons ci ratio: 5.810736e-02	ci left: 1.286564e-03	ci right 1.363845e-03	k: 4544	n:3430000
KS ci ratio: 5.372762e-02	ci left: 1.507924e-03	ci right 1.591463e-03	k: 5314	n:3430000
PCBP1   3430000 perm   4746 sec   (723 perm/sec)   p_kst 1.549271e-03   p_cons 1.324781e-03   p_joint 2.448980e-05

Joint ci ratio: 4.526376e-01	ci left: 1.689129e-05	ci right 2.700580e-05	k: 74	n:3440000
Cons ci ratio: 5.804995e-02	ci left: 1.285402e-03	ci right 1.362534e-03	k: 4553	n:3440000
KS ci ratio: 5.364693e-02	ci left: 1.508129e-03	ci right 1.591550e-03	k: 5330	n:3440000
PCBP1   3440000 perm   4772 sec   (721 perm/sec)   p_kst 1.549419e-03   p_cons 1.323547e-03   p_joint 2.151163e-05

Joint ci ratio: 4.526376e-01	ci left: 1.684233e-05	ci right 2.692753e-05	k: 74	n:3450000
Cons ci ratio: 5.794822e-02	ci left: 1.286247e-03	ci right 1.363290e-03	k: 4569	n:3450000
KS ci ratio: 5.354655e-02	ci left: 1.509477e-03	ci right 1.592812e-03	k: 5350	n:3450000
PCBP1   3450000 perm   4798 sec   (719 perm/sec)   p_kst 1.550725e-03   p_cons 1.324348e-03   p_joint 2.144928e-05

Joint ci ratio: 4.526376e-01	ci left: 1.679365e-05	ci right 2.684970e-05	k: 74	n:3460000
Cons ci ratio: 5.785333e-02	ci left: 1.286802e-03	ci right 1.363748e-03	k: 4584	n:3460000
KS ci ratio: 5.346168e-02	ci left: 1.509962e-03	ci right 1.593188e-03	k: 5367	n:3460000
PCBP1   3460000 perm   4825 sec   (717 perm/sec)   p_kst 1.551156e-03   p_cons 1.324855e-03   p_joint 2.138728e-05

Joint ci ratio: 4.526377e-01	ci left: 1.674526e-05	ci right 2.677233e-05	k: 74	n:3470000
Cons ci ratio: 5.774007e-02	ci left: 1.288206e-03	ci right 1.365080e-03	k: 4602	n:3470000
KS ci ratio: 5.339211e-02	ci left: 1.509592e-03	ci right 1.592685e-03	k: 5381	n:3470000
PCBP1   3470000 perm   4850 sec   (715 perm/sec)   p_kst 1.550720e-03   p_cons 1.326225e-03   p_joint 2.132565e-05

Joint ci ratio: 4.526377e-01	ci left: 1.669714e-05	ci right 2.669539e-05	k: 74	n:3480000
Cons ci ratio: 5.765245e-02	ci left: 1.288469e-03	ci right 1.365238e-03	k: 4616	n:3480000
KS ci ratio: 5.330303e-02	ci left: 1.510357e-03	ci right 1.593349e-03	k: 5399	n:3480000
PCBP1   3480000 perm   4876 sec   (714 perm/sec)   p_kst 1.551437e-03   p_cons 1.326437e-03   p_joint 2.126437e-05

Joint ci ratio: 4.526377e-01	ci left: 1.664930e-05	ci right 2.661890e-05	k: 74	n:3490000
Cons ci ratio: 5.755279e-02	ci left: 1.289296e-03	ci right 1.365977e-03	k: 4632	n:3490000
KS ci ratio: 5.326365e-02	ci left: 1.508291e-03	ci right 1.591107e-03	k: 5407	n:3490000
PCBP1   3490000 perm   4902 sec   (712 perm/sec)   p_kst 1.549284e-03   p_cons 1.327221e-03   p_joint 2.120344e-05

Joint ci ratio: 4.526377e-01	ci left: 1.660173e-05	ci right 2.654285e-05	k: 74	n:3500000
Cons ci ratio: 5.746603e-02	ci left: 1.289554e-03	ci right 1.366132e-03	k: 4646	n:3500000
KS ci ratio: 5.317521e-02	ci left: 1.509056e-03	ci right 1.591772e-03	k: 5425	n:3500000
PCBP1   3500000 perm   4928 sec   (710 perm/sec)   p_kst 1.550000e-03   p_cons 1.327429e-03   p_joint 2.114286e-05

Joint ci ratio: 4.526377e-01	ci left: 1.655443e-05	ci right 2.646723e-05	k: 74	n:3510000
Cons ci ratio: 5.740432e-02	ci left: 1.288689e-03	ci right 1.365129e-03	k: 4656	n:3510000
KS ci ratio: 5.308721e-02	ci left: 1.509817e-03	ci right 1.592433e-03	k: 5443	n:3510000
PCBP1   3510000 perm   4955 sec   (708 perm/sec)   p_kst 1.550712e-03   p_cons 1.326496e-03   p_joint 2.108262e-05

Joint ci ratio: 4.526377e-01	ci left: 1.650740e-05	ci right 2.639204e-05	k: 74	n:3520000
Cons ci ratio: 5.731822e-02	ci left: 1.288948e-03	ci right 1.365286e-03	k: 4670	n:3520000
KS ci ratio: 5.298993e-02	ci left: 1.511134e-03	ci right 1.593667e-03	k: 5463	n:3520000
PCBP1   3520000 perm   4980 sec   (707 perm/sec)   p_kst 1.551989e-03   p_cons 1.326705e-03   p_joint 2.102273e-05

Joint ci ratio: 4.526377e-01	ci left: 1.646063e-05	ci right 2.631727e-05	k: 74	n:3530000
Cons ci ratio: 5.723863e-02	ci left: 1.288926e-03	ci right 1.365153e-03	k: 4683	n:3530000
KS ci ratio: 5.288835e-02	ci left: 1.512724e-03	ci right 1.595180e-03	k: 5484	n:3530000
PCBP1   3530000 perm   5007 sec   (705 perm/sec)   p_kst 1.553541e-03   p_cons 1.326629e-03   p_joint 2.096317e-05

Joint ci ratio: 4.496499e-01	ci left: 1.666451e-05	ci right 2.655732e-05	k: 75	n:3540000
Cons ci ratio: 5.716546e-02	ci left: 1.288627e-03	ci right 1.364735e-03	k: 4695	n:3540000
KS ci ratio: 5.282099e-02	ci left: 1.512353e-03	ci right 1.594680e-03	k: 5498	n:3540000
PCBP1   3540000 perm   5033 sec   (703 perm/sec)   p_kst 1.553107e-03   p_cons 1.326271e-03   p_joint 2.118644e-05

Joint ci ratio: 4.496500e-01	ci left: 1.661757e-05	ci right 2.648251e-05	k: 75	n:3550000
Cons ci ratio: 5.709257e-02	ci left: 1.288329e-03	ci right 1.364319e-03	k: 4707	n:3550000
KS ci ratio: 5.270604e-02	ci left: 1.514764e-03	ci right 1.597038e-03	k: 5522	n:3550000
PCBP1   3550000 perm   5059 sec   (702 perm/sec)   p_kst 1.555493e-03   p_cons 1.325915e-03   p_joint 2.112676e-05

Joint ci ratio: 4.496500e-01	ci left: 1.657089e-05	ci right 2.640812e-05	k: 75	n:3560000
Cons ci ratio: 5.703811e-02	ci left: 1.287202e-03	ci right 1.363051e-03	k: 4716	n:3560000
KS ci ratio: 5.264414e-02	ci left: 1.514113e-03	ci right 1.596252e-03	k: 5535	n:3560000
PCBP1   3560000 perm   5086 sec   (700 perm/sec)   p_kst 1.554775e-03   p_cons 1.324719e-03   p_joint 2.106742e-05

Joint ci ratio: 4.496500e-01	ci left: 1.652448e-05	ci right 2.633415e-05	k: 75	n:3570000
Cons ci ratio: 5.694763e-02	ci left: 1.287738e-03	ci right 1.363495e-03	k: 4731	n:3570000
KS ci ratio: 5.255401e-02	ci left: 1.515124e-03	ci right 1.597173e-03	k: 5554	n:3570000
PCBP1   3570000 perm   5113 sec   (698 perm/sec)   p_kst 1.555742e-03   p_cons 1.325210e-03   p_joint 2.100840e-05

Joint ci ratio: 4.496500e-01	ci left: 1.647832e-05	ci right 2.626059e-05	k: 75	n:3580000
Cons ci ratio: 5.685157e-02	ci left: 1.288547e-03	ci right 1.364219e-03	k: 4747	n:3580000
KS ci ratio: 5.247376e-02	ci left: 1.515578e-03	ci right 1.597522e-03	k: 5571	n:3580000
PCBP1   3580000 perm   5140 sec   (697 perm/sec)   p_kst 1.556145e-03   p_cons 1.325978e-03   p_joint 2.094972e-05

Joint ci ratio: 4.496500e-01	ci left: 1.643242e-05	ci right 2.618744e-05	k: 75	n:3590000
Cons ci ratio: 5.673811e-02	ci left: 1.290175e-03	ci right 1.365787e-03	k: 4766	n:3590000
KS ci ratio: 5.237981e-02	ci left: 1.516854e-03	ci right 1.598716e-03	k: 5591	n:3590000
PCBP1   3590000 perm   5167 sec   (695 perm/sec)   p_kst 1.557382e-03   p_cons 1.327577e-03   p_joint 2.089136e-05

Joint ci ratio: 4.496500e-01	ci left: 1.638677e-05	ci right 2.611469e-05	k: 75	n:3600000
Cons ci ratio: 5.667278e-02	ci left: 1.289603e-03	ci right 1.365092e-03	k: 4777	n:3600000
KS ci ratio: 5.230503e-02	ci left: 1.517027e-03	ci right 1.598778e-03	k: 5607	n:3600000
PCBP1   3600000 perm   5194 sec   (693 perm/sec)   p_kst 1.557500e-03   p_cons 1.326944e-03   p_joint 2.083333e-05

Joint ci ratio: 4.496500e-01	ci left: 1.634138e-05	ci right 2.604236e-05	k: 75	n:3610000
Cons ci ratio: 5.660768e-02	ci left: 1.289035e-03	ci right 1.364400e-03	k: 4788	n:3610000
KS ci ratio: 5.222127e-02	ci left: 1.517746e-03	ci right 1.599401e-03	k: 5625	n:3610000
PCBP1   3610000 perm   5221 sec   (691 perm/sec)   p_kst 1.558172e-03   p_cons 1.326316e-03   p_joint 2.077562e-05

Joint ci ratio: 4.496501e-01	ci left: 1.629624e-05	ci right 2.597042e-05	k: 75	n:3620000
Cons ci ratio: 5.653100e-02	ci left: 1.289014e-03	ci right 1.364273e-03	k: 4801	n:3620000
KS ci ratio: 5.216570e-02	ci left: 1.516825e-03	ci right 1.598341e-03	k: 5637	n:3620000
PCBP1   3620000 perm   5248 sec   (690 perm/sec)   p_kst 1.557182e-03   p_cons 1.326243e-03   p_joint 2.071823e-05

Joint ci ratio: 4.467207e-01	ci left: 1.649572e-05	ci right 2.620526e-05	k: 76	n:3630000
Cons ci ratio: 5.646638e-02	ci left: 1.288451e-03	ci right 1.363588e-03	k: 4812	n:3630000
KS ci ratio: 5.209183e-02	ci left: 1.516996e-03	ci right 1.598403e-03	k: 5653	n:3630000
PCBP1   3630000 perm   5275 sec   (688 perm/sec)   p_kst 1.557300e-03   p_cons 1.325620e-03   p_joint 2.093664e-05

Joint ci ratio: 4.467207e-01	ci left: 1.645041e-05	ci right 2.613326e-05	k: 76	n:3640000
Cons ci ratio: 5.642541e-02	ci left: 1.286807e-03	ci right 1.361792e-03	k: 4819	n:3640000
KS ci ratio: 5.204126e-02	ci left: 1.515811e-03	ci right 1.597073e-03	k: 5664	n:3640000
PCBP1   3640000 perm   5302 sec   (687 perm/sec)   p_kst 1.556044e-03   p_cons 1.323901e-03   p_joint 2.087912e-05

Joint ci ratio: 4.467207e-01	ci left: 1.640534e-05	ci right 2.606167e-05	k: 76	n:3650000
Cons ci ratio: 5.637284e-02	ci left: 1.285712e-03	ci right 1.360562e-03	k: 4828	n:3650000
KS ci ratio: 5.198626e-02	ci left: 1.514903e-03	ci right 1.596028e-03	k: 5676	n:3650000
PCBP1   3650000 perm   5329 sec   (685 perm/sec)   p_kst 1.555068e-03   p_cons 1.322740e-03   p_joint 2.082192e-05

Joint ci ratio: 4.438478e-01	ci left: 1.660309e-05	ci right 2.629414e-05	k: 77	n:3660000
Cons ci ratio: 5.630294e-02	ci left: 1.285432e-03	ci right 1.360169e-03	k: 4840	n:3660000
KS ci ratio: 5.190858e-02	ci left: 1.515349e-03	ci right 1.596372e-03	k: 5693	n:3660000
PCBP1   3660000 perm   5356 sec   (683 perm/sec)   p_kst 1.555464e-03   p_cons 1.322404e-03   p_joint 2.103825e-05

Joint ci ratio: 4.438478e-01	ci left: 1.655785e-05	ci right 2.622249e-05	k: 77	n:3670000
Cons ci ratio: 5.621590e-02	ci left: 1.285959e-03	ci right 1.360608e-03	k: 4855	n:3670000
KS ci ratio: 5.184945e-02	ci left: 1.514716e-03	ci right 1.595610e-03	k: 5706	n:3670000
PCBP1   3670000 perm   5383 sec   (682 perm/sec)   p_kst 1.554768e-03   p_cons 1.322888e-03   p_joint 2.098093e-05

Joint ci ratio: 4.438478e-01	ci left: 1.651286e-05	ci right 2.615123e-05	k: 77	n:3680000
Cons ci ratio: 5.614080e-02	ci left: 1.285948e-03	ci right 1.360493e-03	k: 4868	n:3680000
KS ci ratio: 5.179958e-02	ci left: 1.513550e-03	ci right 1.594302e-03	k: 5717	n:3680000
PCBP1   3680000 perm   5410 sec   (680 perm/sec)   p_kst 1.553533e-03   p_cons 1.322826e-03   p_joint 2.092391e-05

Joint ci ratio: 4.438478e-01	ci left: 1.646811e-05	ci right 2.608036e-05	k: 77	n:3690000
Cons ci ratio: 5.610054e-02	ci left: 1.284333e-03	ci right 1.358729e-03	k: 4875	n:3690000
KS ci ratio: 5.172274e-02	ci left: 1.513996e-03	ci right 1.594648e-03	k: 5734	n:3690000
PCBP1   3690000 perm   5438 sec   (679 perm/sec)   p_kst 1.553930e-03   p_cons 1.321138e-03   p_joint 2.086721e-05

Joint ci ratio: 4.438479e-01	ci left: 1.642360e-05	ci right 2.600988e-05	k: 77	n:3700000
Cons ci ratio: 5.602017e-02	ci left: 1.284593e-03	ci right 1.358894e-03	k: 4889	n:3700000
KS ci ratio: 5.165074e-02	ci left: 1.514173e-03	ci right 1.594719e-03	k: 5750	n:3700000
PCBP1   3700000 perm   5465 sec   (677 perm/sec)   p_kst 1.554054e-03   p_cons 1.321351e-03   p_joint 2.081081e-05

Joint ci ratio: 4.438479e-01	ci left: 1.637933e-05	ci right 2.593977e-05	k: 77	n:3710000
Cons ci ratio: 5.595728e-02	ci left: 1.284054e-03	ci right 1.358238e-03	k: 4900	n:3710000
KS ci ratio: 5.157904e-02	ci left: 1.514348e-03	ci right 1.594789e-03	k: 5766	n:3710000
PCBP1   3710000 perm   5492 sec   (675 perm/sec)   p_kst 1.554178e-03   p_cons 1.320755e-03   p_joint 2.075472e-05

Joint ci ratio: 4.438479e-01	ci left: 1.633530e-05	ci right 2.587004e-05	k: 77	n:3720000
Cons ci ratio: 5.587752e-02	ci left: 1.284313e-03	ci right 1.358403e-03	k: 4914	n:3720000
KS ci ratio: 5.149426e-02	ci left: 1.515319e-03	ci right 1.595675e-03	k: 5785	n:3720000
PCBP1   3720000 perm   5520 sec   (674 perm/sec)   p_kst 1.555108e-03   p_cons 1.320968e-03   p_joint 2.069892e-05

Joint ci ratio: 4.438479e-01	ci left: 1.629151e-05	ci right 2.580068e-05	k: 77	n:3730000
Cons ci ratio: 5.580945e-02	ci left: 1.284042e-03	ci right 1.358023e-03	k: 4926	n:3730000
KS ci ratio: 5.144541e-02	ci left: 1.514168e-03	ci right 1.594384e-03	k: 5796	n:3730000
PCBP1   3730000 perm   5548 sec   (672 perm/sec)   p_kst 1.553887e-03   p_cons 1.320643e-03   p_joint 2.064343e-05

Joint ci ratio: 4.438479e-01	ci left: 1.624795e-05	ci right 2.573170e-05	k: 77	n:3740000
Cons ci ratio: 5.573597e-02	ci left: 1.284036e-03	ci right 1.357916e-03	k: 4939	n:3740000
KS ci ratio: 5.139670e-02	ci left: 1.513023e-03	ci right 1.593100e-03	k: 5807	n:3740000
PCBP1   3740000 perm   5577 sec   (671 perm/sec)   p_kst 1.552674e-03   p_cons 1.320588e-03   p_joint 2.058824e-05

Joint ci ratio: 4.438479e-01	ci left: 1.620462e-05	ci right 2.566308e-05	k: 77	n:3750000
Cons ci ratio: 5.564028e-02	ci left: 1.285082e-03	ci right 1.358891e-03	k: 4956	n:3750000
KS ci ratio: 5.134813e-02	ci left: 1.511884e-03	ci right 1.591823e-03	k: 5818	n:3750000
PCBP1   3750000 perm   5605 sec   (669 perm/sec)   p_kst 1.551467e-03   p_cons 1.321600e-03   p_joint 2.053333e-05

Joint ci ratio: 4.438479e-01	ci left: 1.616152e-05	ci right 2.559483e-05	k: 77	n:3760000
Cons ci ratio: 5.555627e-02	ci left: 1.285598e-03	ci right 1.359322e-03	k: 4971	n:3760000
KS ci ratio: 5.126448e-02	ci left: 1.512851e-03	ci right 1.592707e-03	k: 5837	n:3760000
PCBP1   3760000 perm   5632 sec   (668 perm/sec)   p_kst 1.552394e-03   p_cons 1.322074e-03   p_joint 2.047872e-05

Joint ci ratio: 4.438479e-01	ci left: 1.611865e-05	ci right 2.552693e-05	k: 77	n:3770000
Cons ci ratio: 5.548936e-02	ci left: 1.285327e-03	ci right 1.358944e-03	k: 4983	n:3770000
KS ci ratio: 5.121190e-02	ci left: 1.511980e-03	ci right 1.591706e-03	k: 5849	n:3770000
PCBP1   3770000 perm   5660 sec   (666 perm/sec)   p_kst 1.551459e-03   p_cons 1.321751e-03   p_joint 2.042440e-05

Joint ci ratio: 4.438480e-01	ci left: 1.607601e-05	ci right 2.545940e-05	k: 77	n:3780000
Cons ci ratio: 5.543380e-02	ci left: 1.284535e-03	ci right 1.358031e-03	k: 4993	n:3780000
KS ci ratio: 5.114637e-02	ci left: 1.511898e-03	ci right 1.591514e-03	k: 5864	n:3780000
PCBP1   3780000 perm   5688 sec   (665 perm/sec)   p_kst 1.551323e-03   p_cons 1.320899e-03   p_joint 2.037037e-05

Joint ci ratio: 4.438480e-01	ci left: 1.603359e-05	ci right 2.539223e-05	k: 77	n:3790000
Cons ci ratio: 5.535073e-02	ci left: 1.285049e-03	ci right 1.358460e-03	k: 5008	n:3790000
KS ci ratio: 5.107674e-02	ci left: 1.512076e-03	ci right 1.591591e-03	k: 5880	n:3790000
PCBP1   3790000 perm   5716 sec   (663 perm/sec)   p_kst 1.551451e-03   p_cons 1.321372e-03   p_joint 2.031662e-05

Joint ci ratio: 4.438480e-01	ci left: 1.599140e-05	ci right 2.532541e-05	k: 77	n:3800000
Cons ci ratio: 5.529558e-02	ci left: 1.284263e-03	ci right 1.357553e-03	k: 5018	n:3800000
KS ci ratio: 5.098576e-02	ci left: 1.513553e-03	ci right 1.592999e-03	k: 5901	n:3800000
PCBP1   3800000 perm   5745 sec   (661 perm/sec)   p_kst 1.552895e-03   p_cons 1.320526e-03   p_joint 2.026316e-05

Joint ci ratio: 4.438480e-01	ci left: 1.594943e-05	ci right 2.525894e-05	k: 77	n:3810000
Cons ci ratio: 5.518569e-02	ci left: 1.286069e-03	ci right 1.359312e-03	k: 5038	n:3810000
KS ci ratio: 5.094697e-02	ci left: 1.511913e-03	ci right 1.591210e-03	k: 5910	n:3810000
PCBP1   3810000 perm   5773 sec   (660 perm/sec)   p_kst 1.551181e-03   p_cons 1.322310e-03   p_joint 2.020997e-05

Joint ci ratio: 4.438480e-01	ci left: 1.590767e-05	ci right 2.519281e-05	k: 77	n:3820000
Cons ci ratio: 5.511464e-02	ci left: 1.286058e-03	ci right 1.359204e-03	k: 5051	n:3820000
KS ci ratio: 5.088676e-02	ci left: 1.511573e-03	ci right 1.590756e-03	k: 5924	n:3820000
PCBP1   3820000 perm   5803 sec   (658 perm/sec)   p_kst 1.550785e-03   p_cons 1.322251e-03   p_joint 2.015707e-05

Joint ci ratio: 4.438480e-01	ci left: 1.586614e-05	ci right 2.512704e-05	k: 77	n:3830000
Cons ci ratio: 5.504931e-02	ci left: 1.285790e-03	ci right 1.358831e-03	k: 5063	n:3830000
KS ci ratio: 5.083104e-02	ci left: 1.510977e-03	ci right 1.590040e-03	k: 5937	n:3830000
PCBP1   3830000 perm   5831 sec   (657 perm/sec)   p_kst 1.550131e-03   p_cons 1.321932e-03   p_joint 2.010444e-05

Joint ci ratio: 4.438480e-01	ci left: 1.582482e-05	ci right 2.506160e-05	k: 77	n:3840000
Cons ci ratio: 5.500048e-02	ci left: 1.284753e-03	ci right 1.357668e-03	k: 5072	n:3840000
KS ci ratio: 5.075842e-02	ci left: 1.511413e-03	ci right 1.590383e-03	k: 5954	n:3840000
PCBP1   3840000 perm   5860 sec   (655 perm/sec)   p_kst 1.550521e-03   p_cons 1.320833e-03   p_joint 2.005208e-05

Joint ci ratio: 4.438480e-01	ci left: 1.578372e-05	ci right 2.499651e-05	k: 77	n:3850000
Cons ci ratio: 5.495721e-02	ci left: 1.283466e-03	ci right 1.356249e-03	k: 5080	n:3850000
KS ci ratio: 5.071589e-02	ci left: 1.510052e-03	ci right 1.588883e-03	k: 5964	n:3850000
PCBP1   3850000 perm   5890 sec   (654 perm/sec)   p_kst 1.549091e-03   p_cons 1.319481e-03   p_joint 2.000000e-05

Joint ci ratio: 4.438481e-01	ci left: 1.574283e-05	ci right 2.493175e-05	k: 77	n:3860000
Cons ci ratio: 5.488164e-02	ci left: 1.283718e-03	ci right 1.356412e-03	k: 5094	n:3860000
KS ci ratio: 5.065649e-02	ci left: 1.509721e-03	ci right 1.588439e-03	k: 5978	n:3860000
PCBP1   3860000 perm   5918 sec   (652 perm/sec)   p_kst 1.548705e-03   p_cons 1.319689e-03   p_joint 1.994819e-05

Joint ci ratio: 4.410299e-01	ci left: 1.593175e-05	ci right 2.515434e-05	k: 78	n:3870000
Cons ci ratio: 5.480102e-02	ci left: 1.284224e-03	ci right 1.356836e-03	k: 5109	n:3870000
KS ci ratio: 5.058462e-02	ci left: 1.510157e-03	ci right 1.588783e-03	k: 5995	n:3870000
PCBP1   3870000 perm   5948 sec   (651 perm/sec)   p_kst 1.549096e-03   p_cons 1.320155e-03   p_joint 2.015504e-05

Joint ci ratio: 4.410299e-01	ci left: 1.589069e-05	ci right 2.508951e-05	k: 78	n:3880000
Cons ci ratio: 5.474215e-02	ci left: 1.283710e-03	ci right 1.356213e-03	k: 5120	n:3880000
KS ci ratio: 5.052147e-02	ci left: 1.510082e-03	ci right 1.588603e-03	k: 6010	n:3880000
PCBP1   3880000 perm   5976 sec   (649 perm/sec)   p_kst 1.548969e-03   p_cons 1.319588e-03   p_joint 2.010309e-05

Joint ci ratio: 4.410299e-01	ci left: 1.584984e-05	ci right 2.502501e-05	k: 78	n:3890000
Cons ci ratio: 5.467813e-02	ci left: 1.283453e-03	ci right 1.355853e-03	k: 5132	n:3890000
KS ci ratio: 5.048373e-02	ci left: 1.508484e-03	ci right 1.586862e-03	k: 6019	n:3890000
PCBP1   3890000 perm   6006 sec   (648 perm/sec)   p_kst 1.547301e-03   p_cons 1.319280e-03   p_joint 2.005141e-05

Joint ci ratio: 4.410299e-01	ci left: 1.580920e-05	ci right 2.496084e-05	k: 78	n:3900000
Cons ci ratio: 5.459840e-02	ci left: 1.283955e-03	ci right 1.356276e-03	k: 5147	n:3900000
KS ci ratio: 5.044608e-02	ci left: 1.506895e-03	ci right 1.585130e-03	k: 6028	n:3900000
PCBP1   3900000 perm   6035 sec   (646 perm/sec)   p_kst 1.545641e-03   p_cons 1.319744e-03   p_joint 2.000000e-05

Joint ci ratio: 4.410299e-01	ci left: 1.576877e-05	ci right 2.489700e-05	k: 78	n:3910000
Cons ci ratio: 5.452431e-02	ci left: 1.284203e-03	ci right 1.356436e-03	k: 5161	n:3910000
KS ci ratio: 5.037927e-02	ci left: 1.507082e-03	ci right 1.585220e-03	k: 6044	n:3910000
PCBP1   3910000 perm   6065 sec   (645 perm/sec)   p_kst 1.545780e-03   p_cons 1.319949e-03   p_joint 1.994885e-05

Joint ci ratio: 4.382648e-01	ci left: 1.595540e-05	ci right 2.511667e-05	k: 79	n:3920000
Cons ci ratio: 5.446105e-02	ci left: 1.283947e-03	ci right 1.356079e-03	k: 5173	n:3920000
KS ci ratio: 5.030026e-02	ci left: 1.508023e-03	ci right 1.586084e-03	k: 6063	n:3920000
PCBP1   3920000 perm   6094 sec   (643 perm/sec)   p_kst 1.546684e-03   p_cons 1.319643e-03   p_joint 2.015306e-05

Joint ci ratio: 4.355510e-01	ci left: 1.614126e-05	ci right 2.533503e-05	k: 80	n:3930000
Cons ci ratio: 5.438226e-02	ci left: 1.284445e-03	ci right 1.356497e-03	k: 5188	n:3930000
KS ci ratio: 5.026302e-02	ci left: 1.506447e-03	ci right 1.584367e-03	k: 6072	n:3930000
PCBP1   3930000 perm   6124 sec   (642 perm/sec)   p_kst 1.545038e-03   p_cons 1.320102e-03   p_joint 2.035623e-05

Joint ci ratio: 4.355510e-01	ci left: 1.610029e-05	ci right 2.527073e-05	k: 80	n:3940000
Cons ci ratio: 5.430904e-02	ci left: 1.284690e-03	ci right 1.356656e-03	k: 5202	n:3940000
KS ci ratio: 5.018455e-02	ci left: 1.507385e-03	ci right 1.585228e-03	k: 6091	n:3940000
PCBP1   3940000 perm   6154 sec   (640 perm/sec)   p_kst 1.545939e-03   p_cons 1.320305e-03   p_joint 2.030457e-05

Joint ci ratio: 4.355510e-01	ci left: 1.605953e-05	ci right 2.520675e-05	k: 80	n:3950000
Cons ci ratio: 5.423091e-02	ci left: 1.285183e-03	ci right 1.357070e-03	k: 5217	n:3950000
KS ci ratio: 5.010645e-02	ci left: 1.508319e-03	ci right 1.586086e-03	k: 6110	n:3950000
PCBP1   3950000 perm   6184 sec   (639 perm/sec)   p_kst 1.546835e-03   p_cons 1.320759e-03   p_joint 2.025316e-05

Joint ci ratio: 4.328870e-01	ci left: 1.624389e-05	ci right 2.542307e-05	k: 81	n:3960000
Cons ci ratio: 5.414794e-02	ci left: 1.285923e-03	ci right 1.357738e-03	k: 5233	n:3960000
KS ci ratio: 5.003689e-02	ci left: 1.508749e-03	ci right 1.586427e-03	k: 6127	n:3960000
PCBP1   3960000 perm   6213 sec   (637 perm/sec)   p_kst 1.547222e-03   p_cons 1.321465e-03   p_joint 2.045455e-05

Joint ci ratio: 4.328871e-01	ci left: 1.620298e-05	ci right 2.535903e-05	k: 81	n:3970000
Cons ci ratio: 5.409115e-02	ci left: 1.285418e-03	ci right 1.357127e-03	k: 5244	n:3970000
KS ci ratio: 4.995948e-02	ci left: 1.509675e-03	ci right 1.587277e-03	k: 6146	n:3970000
PCBP1   3970000 perm   6243 sec   (636 perm/sec)   p_kst 1.548111e-03   p_cons 1.320907e-03   p_joint 2.040302e-05

Joint ci ratio: 4.328871e-01	ci left: 1.616227e-05	ci right 2.529532e-05	k: 81	n:3980000
Cons ci ratio: 5.403968e-02	ci left: 1.284666e-03	ci right 1.356263e-03	k: 5254	n:3980000
KS ci ratio: 4.991487e-02	ci left: 1.508611e-03	ci right 1.586087e-03	k: 6157	n:3980000
PCBP1   3980000 perm   6273 sec   (634 perm/sec)   p_kst 1.546985e-03   p_cons 1.320101e-03   p_joint 2.035176e-05

Joint ci ratio: 4.328871e-01	ci left: 1.612176e-05	ci right 2.523192e-05	k: 81	n:3990000
Cons ci ratio: 5.396783e-02	ci left: 1.284908e-03	ci right 1.356420e-03	k: 5268	n:3990000
KS ci ratio: 4.985015e-02	ci left: 1.508790e-03	ci right 1.586172e-03	k: 6173	n:3990000
PCBP1   3990000 perm   6302 sec   (633 perm/sec)   p_kst 1.547118e-03   p_cons 1.320301e-03   p_joint 2.030075e-05

Joint ci ratio: 2.778745e-01	ci left: 4.284511e-05	ci right 5.689562e-05	k: 198	n:4000000
Cons ci ratio: 5.389116e-02	ci left: 1.285395e-03	ci right 1.356830e-03	k: 5283	n:4000000
KS ci ratio: 4.979373e-02	ci left: 1.508475e-03	ci right 1.585750e-03	k: 6187	n:4000000
PCBP1   4000000 perm   6332 sec   (632 perm/sec)   p_kst 1.546750e-03   p_cons 1.320750e-03   p_joint 4.950000e-05

Joint ci ratio: 2.771789e-01	ci left: 4.297029e-05	ci right 5.702042e-05	k: 199	n:4010000
Cons ci ratio: 5.384536e-02	ci left: 1.284404e-03	ci right 1.355721e-03	k: 5292	n:4010000
KS ci ratio: 4.971343e-02	ci left: 1.509638e-03	ci right 1.586845e-03	k: 6207	n:4010000
PCBP1   4010000 perm   6361 sec   (630 perm/sec)   p_kst 1.547880e-03   p_cons 1.319701e-03   p_joint 4.962594e-05

Joint ci ratio: 2.771789e-01	ci left: 4.286339e-05	ci right 5.687858e-05	k: 199	n:4020000
Cons ci ratio: 5.376921e-02	ci left: 1.284890e-03	ci right 1.356130e-03	k: 5307	n:4020000
KS ci ratio: 4.966547e-02	ci left: 1.508831e-03	ci right 1.585920e-03	k: 6219	n:4020000
PCBP1   4020000 perm   6392 sec   (629 perm/sec)   p_kst 1.547015e-03   p_cons 1.320149e-03   p_joint 4.950249e-05

Joint ci ratio: 2.764886e-01	ci left: 4.298795e-05	ci right 5.700276e-05	k: 200	n:4030000
Cons ci ratio: 5.369843e-02	ci left: 1.285129e-03	ci right 1.356285e-03	k: 5321	n:4030000
KS ci ratio: 4.961367e-02	ci left: 1.508273e-03	ci right 1.585250e-03	k: 6232	n:4030000
PCBP1   4030000 perm   6423 sec   (627 perm/sec)   p_kst 1.546402e-03   p_cons 1.320347e-03   p_joint 4.962779e-05

Joint ci ratio: 2.758033e-01	ci left: 4.311193e-05	ci right 5.712629e-05	k: 201	n:4040000
Cons ci ratio: 5.363801e-02	ci left: 1.284879e-03	ci right 1.355938e-03	k: 5333	n:4040000
KS ci ratio: 4.954217e-02	ci left: 1.508940e-03	ci right 1.585837e-03	k: 6250	n:4040000
PCBP1   4040000 perm   6453 sec   (626 perm/sec)   p_kst 1.547030e-03   p_cons 1.320050e-03   p_joint 4.975248e-05

Joint ci ratio: 2.758033e-01	ci left: 4.300548e-05	ci right 5.698523e-05	k: 201	n:4050000
Cons ci ratio: 5.358782e-02	ci left: 1.284142e-03	ci right 1.355093e-03	k: 5343	n:4050000
KS ci ratio: 4.949866e-02	ci left: 1.507896e-03	ci right 1.584671e-03	k: 6261	n:4050000
PCBP1   4050000 perm   6484 sec   (625 perm/sec)   p_kst 1.545926e-03   p_cons 1.319259e-03   p_joint 4.962963e-05

Joint ci ratio: 2.758033e-01	ci left: 4.289956e-05	ci right 5.684488e-05	k: 201	n:4060000
Cons ci ratio: 5.353277e-02	ci left: 1.283652e-03	ci right 1.354501e-03	k: 5354	n:4060000
KS ci ratio: 4.945527e-02	ci left: 1.506858e-03	ci right 1.583511e-03	k: 6272	n:4060000
PCBP1   4060000 perm   6514 sec   (623 perm/sec)   p_kst 1.544828e-03   p_cons 1.318719e-03   p_joint 4.950739e-05

Joint ci ratio: 2.778746e-01	ci left: 4.210821e-05	ci right 5.591708e-05	k: 198	n:4070000
Cons ci ratio: 5.346292e-02	ci left: 1.283892e-03	ci right 1.354658e-03	k: 5368	n:4070000
KS ci ratio: 4.940412e-02	ci left: 1.506310e-03	ci right 1.582854e-03	k: 6285	n:4070000
PCBP1   4070000 perm   6544 sec   (622 perm/sec)   p_kst 1.544226e-03   p_cons 1.318919e-03   p_joint 4.864865e-05

Joint ci ratio: 2.778746e-01	ci left: 4.200500e-05	ci right 5.578002e-05	k: 198	n:4080000
Cons ci ratio: 5.341322e-02	ci left: 1.283163e-03	ci right 1.353822e-03	k: 5378	n:4080000
KS ci ratio: 4.934528e-02	ci left: 1.506249e-03	ci right 1.582696e-03	k: 6300	n:4080000
PCBP1   4080000 perm   6575 sec   (621 perm/sec)   p_kst 1.544118e-03   p_cons 1.318137e-03   p_joint 4.852941e-05

Joint ci ratio: 2.771790e-01	ci left: 4.212979e-05	ci right 5.590511e-05	k: 199	n:4090000
Cons ci ratio: 5.332404e-02	ci left: 1.284368e-03	ci right 1.354971e-03	k: 5396	n:4090000
KS ci ratio: 4.929057e-02	ci left: 1.505947e-03	ci right 1.582292e-03	k: 6314	n:4090000
PCBP1   4090000 perm   6605 sec   (619 perm/sec)   p_kst 1.543765e-03   p_cons 1.319315e-03   p_joint 4.865526e-05

Joint ci ratio: 2.771791e-01	ci left: 4.202703e-05	ci right 5.576876e-05	k: 199	n:4100000
Cons ci ratio: 5.327967e-02	ci left: 1.283402e-03	ci right 1.353891e-03	k: 5405	n:4100000
KS ci ratio: 4.924772e-02	ci left: 1.504924e-03	ci right 1.581148e-03	k: 6325	n:4100000
PCBP1   4100000 perm   6636 sec   (618 perm/sec)   p_kst 1.542683e-03   p_cons 1.318293e-03   p_joint 4.853659e-05

Joint ci ratio: 2.771791e-01	ci left: 4.192478e-05	ci right 5.563307e-05	k: 199	n:4110000
Cons ci ratio: 5.319606e-02	ci left: 1.284360e-03	ci right 1.354788e-03	k: 5422	n:4110000
KS ci ratio: 4.919721e-02	ci left: 1.504387e-03	ci right 1.580503e-03	k: 6338	n:4110000
PCBP1   4110000 perm   6667 sec   (616 perm/sec)   p_kst 1.542092e-03   p_cons 1.319221e-03   p_joint 4.841849e-05

Joint ci ratio: 2.771791e-01	ci left: 4.182302e-05	ci right 5.549804e-05	k: 199	n:4120000
Cons ci ratio: 5.311774e-02	ci left: 1.285075e-03	ci right 1.355435e-03	k: 5438	n:4120000
KS ci ratio: 4.915461e-02	ci left: 1.503372e-03	ci right 1.579370e-03	k: 6349	n:4120000
PCBP1   4120000 perm   6698 sec   (615 perm/sec)   p_kst 1.541019e-03   p_cons 1.319903e-03   p_joint 4.830097e-05

Joint ci ratio: 2.771791e-01	ci left: 4.172175e-05	ci right 5.536366e-05	k: 199	n:4130000
Cons ci ratio: 5.305438e-02	ci left: 1.285069e-03	ci right 1.355343e-03	k: 5451	n:4130000
KS ci ratio: 4.908507e-02	ci left: 1.504037e-03	ci right 1.579958e-03	k: 6367	n:4130000
PCBP1   4130000 perm   6729 sec   (614 perm/sec)   p_kst 1.541646e-03   p_cons 1.319855e-03   p_joint 4.818402e-05

Joint ci ratio: 2.764887e-01	ci left: 4.184575e-05	ci right 5.548820e-05	k: 200	n:4140000
Cons ci ratio: 5.299124e-02	ci left: 1.285064e-03	ci right 1.355250e-03	k: 5464	n:4140000
KS ci ratio: 4.903121e-02	ci left: 1.503744e-03	ci right 1.579564e-03	k: 6381	n:4140000
PCBP1   4140000 perm   6761 sec   (612 perm/sec)   p_kst 1.541304e-03   p_cons 1.319807e-03   p_joint 4.830918e-05

Joint ci ratio: 2.758035e-01	ci left: 4.196920e-05	ci right 5.561210e-05	k: 201	n:4150000
Cons ci ratio: 5.294285e-02	ci left: 1.284345e-03	ci right 1.354426e-03	k: 5474	n:4150000
KS ci ratio: 4.897369e-02	ci left: 1.503691e-03	ci right 1.579417e-03	k: 6396	n:4150000
PCBP1   4150000 perm   6792 sec   (611 perm/sec)   p_kst 1.541205e-03   p_cons 1.319036e-03   p_joint 4.843373e-05

Joint ci ratio: 2.758035e-01	ci left: 4.186831e-05	ci right 5.547842e-05	k: 201	n:4160000
Cons ci ratio: 5.287528e-02	ci left: 1.284578e-03	ci right 1.354580e-03	k: 5488	n:4160000
KS ci ratio: 4.890110e-02	ci left: 1.504588e-03	ci right 1.580243e-03	k: 6415	n:4160000
PCBP1   4160000 perm   6823 sec   (610 perm/sec)   p_kst 1.542067e-03   p_cons 1.319231e-03   p_joint 4.831731e-05

Joint ci ratio: 2.758035e-01	ci left: 4.176791e-05	ci right 5.534538e-05	k: 201	n:4170000
Cons ci ratio: 5.281759e-02	ci left: 1.284337e-03	ci right 1.354248e-03	k: 5500	n:4170000
KS ci ratio: 4.879847e-02	ci left: 1.507375e-03	ci right 1.583008e-03	k: 6442	n:4170000
PCBP1   4170000 perm   6854 sec   (608 perm/sec)   p_kst 1.544844e-03   p_cons 1.318945e-03   p_joint 4.820144e-05

Joint ci ratio: 2.751233e-01	ci left: 4.189070e-05	ci right 5.546869e-05	k: 202	n:4180000
Cons ci ratio: 5.275529e-02	ci left: 1.284334e-03	ci right 1.354159e-03	k: 5513	n:4180000
KS ci ratio: 4.872665e-02	ci left: 1.508259e-03	ci right 1.583821e-03	k: 6461	n:4180000
PCBP1   4180000 perm   6886 sec   (607 perm/sec)   p_kst 1.545694e-03   p_cons 1.318900e-03   p_joint 4.832536e-05

Joint ci ratio: 2.751234e-01	ci left: 4.179072e-05	ci right 5.533631e-05	k: 202	n:4190000
Cons ci ratio: 5.270754e-02	ci left: 1.283624e-03	ci right 1.353345e-03	k: 5523	n:4190000
KS ci ratio: 4.865140e-02	ci left: 1.509375e-03	ci right 1.584873e-03	k: 6481	n:4190000
PCBP1   4190000 perm   6917 sec   (606 perm/sec)   p_kst 1.546778e-03   p_cons 1.318138e-03   p_joint 4.821002e-05

Joint ci ratio: 2.744482e-01	ci left: 4.191291e-05	ci right 5.545901e-05	k: 203	n:4200000
Cons ci ratio: 5.263611e-02	ci left: 1.284092e-03	ci right 1.353741e-03	k: 5538	n:4200000
KS ci ratio: 4.858772e-02	ci left: 1.509780e-03	ci right 1.585196e-03	k: 6498	n:4200000
PCBP1   4200000 perm   6948 sec   (604 perm/sec)   p_kst 1.547143e-03   p_cons 1.318571e-03   p_joint 4.833333e-05

Joint ci ratio: 2.737780e-01	ci left: 4.203456e-05	ci right 5.558109e-05	k: 204	n:4210000
Cons ci ratio: 5.258393e-02	ci left: 1.283620e-03	ci right 1.353173e-03	k: 5549	n:4210000
KS ci ratio: 4.853174e-02	ci left: 1.509713e-03	ci right 1.585037e-03	k: 6513	n:4210000
PCBP1   4210000 perm   6980 sec   (603 perm/sec)   p_kst 1.547031e-03   p_cons 1.318052e-03   p_joint 4.845606e-05

Joint ci ratio: 2.737780e-01	ci left: 4.193495e-05	ci right 5.544938e-05	k: 204	n:4220000
Cons ci ratio: 5.252719e-02	ci left: 1.283385e-03	ci right 1.352847e-03	k: 5561	n:4220000
KS ci ratio: 4.846481e-02	ci left: 1.510349e-03	ci right 1.585598e-03	k: 6531	n:4220000
PCBP1   4220000 perm   7012 sec   (602 perm/sec)   p_kst 1.547630e-03   p_cons 1.317773e-03   p_joint 4.834123e-05

Joint ci ratio: 2.717964e-01	ci left: 4.249654e-05	ci right 5.607590e-05	k: 207	n:4230000
Cons ci ratio: 5.245178e-02	ci left: 1.284084e-03	ci right 1.353481e-03	k: 5577	n:4230000
KS ci ratio: 4.840556e-02	ci left: 1.510515e-03	ci right 1.585678e-03	k: 6547	n:4230000
PCBP1   4230000 perm   7044 sec   (600 perm/sec)   p_kst 1.547754e-03   p_cons 1.318440e-03   p_joint 4.893617e-05

Joint ci ratio: 2.717964e-01	ci left: 4.239631e-05	ci right 5.594365e-05	k: 207	n:4240000
Cons ci ratio: 5.238139e-02	ci left: 1.284546e-03	ci right 1.353873e-03	k: 5592	n:4240000
KS ci ratio: 4.835022e-02	ci left: 1.510448e-03	ci right 1.585519e-03	k: 6562	n:4240000
PCBP1   4240000 perm   7076 sec   (599 perm/sec)   p_kst 1.547642e-03   p_cons 1.318868e-03   p_joint 4.882075e-05

Joint ci ratio: 2.711454e-01	ci left: 4.251583e-05	ci right 5.606329e-05	k: 208	n:4250000
Cons ci ratio: 5.230660e-02	ci left: 1.285239e-03	ci right 1.354502e-03	k: 5608	n:4250000
KS ci ratio: 4.827302e-02	ci left: 1.511775e-03	ci right 1.586789e-03	k: 6583	n:4250000
PCBP1   4250000 perm   7109 sec   (598 perm/sec)   p_kst 1.548941e-03   p_cons 1.319529e-03   p_joint 4.894118e-05

Joint ci ratio: 2.704990e-01	ci left: 4.263484e-05	ci right 5.618232e-05	k: 209	n:4260000
Cons ci ratio: 5.225540e-02	ci left: 1.284771e-03	ci right 1.353938e-03	k: 5619	n:4260000
KS ci ratio: 4.820715e-02	ci left: 1.512401e-03	ci right 1.587340e-03	k: 6601	n:4260000
PCBP1   4260000 perm   7141 sec   (597 perm/sec)   p_kst 1.549531e-03   p_cons 1.319014e-03   p_joint 4.906103e-05

Joint ci ratio: 2.692200e-01	ci left: 4.297169e-05	ci right 5.655074e-05	k: 211	n:4270000
Cons ci ratio: 5.219507e-02	ci left: 1.284767e-03	ci right 1.353851e-03	k: 5632	n:4270000
KS ci ratio: 4.815613e-02	ci left: 1.512098e-03	ci right 1.586941e-03	k: 6615	n:4270000
PCBP1   4270000 perm   7173 sec   (595 perm/sec)   p_kst 1.549180e-03   p_cons 1.318970e-03   p_joint 4.941452e-05

Joint ci ratio: 2.692200e-01	ci left: 4.287129e-05	ci right 5.641862e-05	k: 211	n:4280000
Cons ci ratio: 5.214420e-02	ci left: 1.284302e-03	ci right 1.353292e-03	k: 5643	n:4280000
KS ci ratio: 4.807622e-02	ci left: 1.513644e-03	ci right 1.588435e-03	k: 6637	n:4280000
PCBP1   4280000 perm   7206 sec   (594 perm/sec)   p_kst 1.550701e-03   p_cons 1.318458e-03   p_joint 4.929907e-05

Joint ci ratio: 2.692200e-01	ci left: 4.277135e-05	ci right 5.628711e-05	k: 211	n:4290000
Cons ci ratio: 5.209808e-02	ci left: 1.283608e-03	ci right 1.352499e-03	k: 5653	n:4290000
KS ci ratio: 4.802923e-02	ci left: 1.513109e-03	ci right 1.587799e-03	k: 6650	n:4290000
PCBP1   4290000 perm   7239 sec   (593 perm/sec)   p_kst 1.550117e-03   p_cons 1.317716e-03   p_joint 4.918415e-05

Joint ci ratio: 2.692200e-01	ci left: 4.267188e-05	ci right 5.615621e-05	k: 211	n:4300000
Cons ci ratio: 5.205669e-02	ci left: 1.282689e-03	ci right 1.351474e-03	k: 5662	n:4300000
KS ci ratio: 4.794996e-02	ci left: 1.514645e-03	ci right 1.589284e-03	k: 6672	n:4300000
PCBP1   4300000 perm   7271 sec   (591 perm/sec)   p_kst 1.551628e-03   p_cons 1.316744e-03   p_joint 4.906977e-05

Joint ci ratio: 2.717965e-01	ci left: 4.170774e-05	ci right 5.503505e-05	k: 207	n:4310000
Cons ci ratio: 5.200163e-02	ci left: 1.282461e-03	ci right 1.351158e-03	k: 5674	n:4310000
KS ci ratio: 4.789974e-02	ci left: 1.514340e-03	ci right 1.588884e-03	k: 6686	n:4310000
PCBP1   4310000 perm   7305 sec   (590 perm/sec)   p_kst 1.551276e-03   p_cons 1.316473e-03   p_joint 4.802784e-05

Joint ci ratio: 2.717965e-01	ci left: 4.161119e-05	ci right 5.490766e-05	k: 207	n:4320000
Cons ci ratio: 5.193760e-02	ci left: 1.282691e-03	ci right 1.351314e-03	k: 5688	n:4320000
KS ci ratio: 4.786758e-02	ci left: 1.512893e-03	ci right 1.587314e-03	k: 6695	n:4320000
PCBP1   4320000 perm   7338 sec   (589 perm/sec)   p_kst 1.549769e-03   p_cons 1.316667e-03   p_joint 4.791667e-05

Joint ci ratio: 2.717965e-01	ci left: 4.151509e-05	ci right 5.478085e-05	k: 207	n:4330000
Cons ci ratio: 5.188292e-02	ci left: 1.282464e-03	ci right 1.351000e-03	k: 5700	n:4330000
KS ci ratio: 4.780692e-02	ci left: 1.513278e-03	ci right 1.587622e-03	k: 6712	n:4330000
PCBP1   4330000 perm   7371 sec   (587 perm/sec)   p_kst 1.550115e-03   p_cons 1.316397e-03   p_joint 4.780600e-05

Joint ci ratio: 2.711455e-01	ci left: 4.163417e-05	ci right 5.490069e-05	k: 208	n:4340000
Cons ci ratio: 5.182841e-02	ci left: 1.282238e-03	ci right 1.350688e-03	k: 5712	n:4340000
KS ci ratio: 4.774649e-02	ci left: 1.513662e-03	ci right 1.587927e-03	k: 6729	n:4340000
PCBP1   4340000 perm   7404 sec   (586 perm/sec)   p_kst 1.550461e-03   p_cons 1.316129e-03   p_joint 4.792627e-05

Joint ci ratio: 2.711455e-01	ci left: 4.153846e-05	ci right 5.477448e-05	k: 208	n:4350000
Cons ci ratio: 5.177860e-02	ci left: 1.281786e-03	ci right 1.350145e-03	k: 5723	n:4350000
KS ci ratio: 4.770400e-02	ci left: 1.512908e-03	ci right 1.587068e-03	k: 6741	n:4350000
PCBP1   4350000 perm   7437 sec   (585 perm/sec)   p_kst 1.549655e-03   p_cons 1.315632e-03   p_joint 4.781609e-05

Joint ci ratio: 2.711455e-01	ci left: 4.144318e-05	ci right 5.464885e-05	k: 208	n:4360000
Cons ci ratio: 5.170636e-02	ci left: 1.282469e-03	ci right 1.350765e-03	k: 5739	n:4360000
KS ci ratio: 4.766869e-02	ci left: 1.511704e-03	ci right 1.585749e-03	k: 6751	n:4360000
PCBP1   4360000 perm   7470 sec   (584 perm/sec)   p_kst 1.548394e-03   p_cons 1.316284e-03   p_joint 4.770642e-05

Joint ci ratio: 2.698574e-01	ci left: 4.177498e-05	ci right 5.501242e-05	k: 210	n:4370000
Cons ci ratio: 5.165690e-02	ci left: 1.282019e-03	ci right 1.350224e-03	k: 5750	n:4370000
KS ci ratio: 4.760879e-02	ci left: 1.512089e-03	ci right 1.586057e-03	k: 6768	n:4370000
PCBP1   4370000 perm   7504 sec   (582 perm/sec)   p_kst 1.548741e-03   p_cons 1.315789e-03   p_joint 4.805492e-05

Joint ci ratio: 2.685874e-01	ci left: 4.210541e-05	ci right 5.537419e-05	k: 212	n:4380000
Cons ci ratio: 5.158518e-02	ci left: 1.282698e-03	ci right 1.350841e-03	k: 5766	n:4380000
KS ci ratio: 4.753508e-02	ci left: 1.513374e-03	ci right 1.587287e-03	k: 6789	n:4380000
PCBP1   4380000 perm   7537 sec   (581 perm/sec)   p_kst 1.550000e-03   p_cons 1.316438e-03   p_joint 4.840183e-05

Joint ci ratio: 2.679591e-01	ci left: 4.222197e-05	ci right 5.549113e-05	k: 213	n:4390000
Cons ci ratio: 5.150038e-02	ci left: 1.284048e-03	ci right 1.352148e-03	k: 5785	n:4390000
KS ci ratio: 4.746520e-02	ci left: 1.514428e-03	ci right 1.588282e-03	k: 6809	n:4390000
PCBP1   4390000 perm   7570 sec   (580 perm/sec)   p_kst 1.551025e-03   p_cons 1.317768e-03   p_joint 4.851936e-05

Joint ci ratio: 2.679591e-01	ci left: 4.212601e-05	ci right 5.536501e-05	k: 213	n:4400000
Cons ci ratio: 5.142486e-02	ci left: 1.284944e-03	ci right 1.352988e-03	k: 5802	n:4400000
KS ci ratio: 4.741302e-02	ci left: 1.514355e-03	ci right 1.588121e-03	k: 6824	n:4400000
PCBP1   4400000 perm   7604 sec   (579 perm/sec)   p_kst 1.550909e-03   p_cons 1.318636e-03   p_joint 4.840909e-05

Joint ci ratio: 2.679592e-01	ci left: 4.203048e-05	ci right 5.523947e-05	k: 213	n:4410000
Cons ci ratio: 5.137621e-02	ci left: 1.284492e-03	ci right 1.352446e-03	k: 5813	n:4410000
KS ci ratio: 4.738182e-02	ci left: 1.512938e-03	ci right 1.586585e-03	k: 6833	n:4410000
PCBP1   4410000 perm   7637 sec   (577 perm/sec)   p_kst 1.549433e-03   p_cons 1.318141e-03   p_joint 4.829932e-05

Joint ci ratio: 2.673352e-01	ci left: 4.214646e-05	ci right 5.535588e-05	k: 214	n:4420000
Cons ci ratio: 5.131887e-02	ci left: 1.284490e-03	ci right 1.352366e-03	k: 5826	n:4420000
KS ci ratio: 4.731608e-02	ci left: 1.513763e-03	ci right 1.587345e-03	k: 6852	n:4420000
PCBP1   4420000 perm   7671 sec   (576 perm/sec)   p_kst 1.550226e-03   p_cons 1.318100e-03   p_joint 4.841629e-05

Joint ci ratio: 2.673353e-01	ci left: 4.205132e-05	ci right 5.523092e-05	k: 214	n:4430000
Cons ci ratio: 5.123537e-02	ci left: 1.285824e-03	ci right 1.353657e-03	k: 5845	n:4430000
KS ci ratio: 4.726783e-02	ci left: 1.513469e-03	ci right 1.586960e-03	k: 6866	n:4430000
PCBP1   4430000 perm   7704 sec   (575 perm/sec)   p_kst 1.549887e-03   p_cons 1.319413e-03   p_joint 4.830700e-05

Joint ci ratio: 2.673353e-01	ci left: 4.195661e-05	ci right 5.510653e-05	k: 214	n:4440000
Cons ci ratio: 5.119600e-02	ci left: 1.284929e-03	ci right 1.352661e-03	k: 5854	n:4440000
KS ci ratio: 4.718883e-02	ci left: 1.515179e-03	ci right 1.588627e-03	k: 6889	n:4440000
PCBP1   4440000 perm   7738 sec   (574 perm/sec)   p_kst 1.551577e-03   p_cons 1.318468e-03   p_joint 4.819820e-05

Joint ci ratio: 2.673353e-01	ci left: 4.186232e-05	ci right 5.498269e-05	k: 214	n:4450000
Cons ci ratio: 5.111746e-02	ci left: 1.286035e-03	ci right 1.353718e-03	k: 5872	n:4450000
KS ci ratio: 4.714097e-02	ci left: 1.514883e-03	ci right 1.588240e-03	k: 6903	n:4450000
PCBP1   4450000 perm   7771 sec   (573 perm/sec)   p_kst 1.551236e-03   p_cons 1.319551e-03   p_joint 4.808989e-05

Joint ci ratio: 2.673353e-01	ci left: 4.176846e-05	ci right 5.485942e-05	k: 214	n:4460000
Cons ci ratio: 5.104795e-02	ci left: 1.286693e-03	ci right 1.354316e-03	k: 5888	n:4460000
KS ci ratio: 4.707621e-02	ci left: 1.515696e-03	ci right 1.588989e-03	k: 6922	n:4460000
PCBP1   4460000 perm   7805 sec   (571 perm/sec)   p_kst 1.552018e-03   p_cons 1.320179e-03   p_joint 4.798206e-05

Joint ci ratio: 2.667157e-01	ci left: 4.188376e-05	ci right 5.497534e-05	k: 215	n:4470000
Cons ci ratio: 5.099170e-02	ci left: 1.286686e-03	ci right 1.354231e-03	k: 5901	n:4470000
KS ci ratio: 4.701173e-02	ci left: 1.516506e-03	ci right 1.589735e-03	k: 6941	n:4470000
PCBP1   4470000 perm   7838 sec   (570 perm/sec)   p_kst 1.552796e-03   p_cons 1.320134e-03   p_joint 4.809843e-05

Joint ci ratio: 2.661005e-01	ci left: 4.199858e-05	ci right 5.509071e-05	k: 216	n:4480000
Cons ci ratio: 5.094858e-02	ci left: 1.286017e-03	ci right 1.353469e-03	k: 5911	n:4480000
KS ci ratio: 4.697793e-02	ci left: 1.515327e-03	ci right 1.588445e-03	k: 6951	n:4480000
PCBP1   4480000 perm   7872 sec   (569 perm/sec)   p_kst 1.551562e-03   p_cons 1.319420e-03   p_joint 4.821429e-05

Joint ci ratio: 2.661005e-01	ci left: 4.190504e-05	ci right 5.496802e-05	k: 216	n:4490000
Cons ci ratio: 5.088835e-02	ci left: 1.286231e-03	ci right 1.353613e-03	k: 5925	n:4490000
KS ci ratio: 4.691048e-02	ci left: 1.516354e-03	ci right 1.589414e-03	k: 6971	n:4490000
PCBP1   4490000 perm   7906 sec   (568 perm/sec)   p_kst 1.552561e-03   p_cons 1.319599e-03   p_joint 4.810690e-05

Joint ci ratio: 2.661005e-01	ci left: 4.181192e-05	ci right 5.484587e-05	k: 216	n:4500000
Cons ci ratio: 5.082406e-02	ci left: 1.286664e-03	ci right 1.353980e-03	k: 5940	n:4500000
KS ci ratio: 4.687018e-02	ci left: 1.515620e-03	ci right 1.588580e-03	k: 6983	n:4500000
PCBP1   4500000 perm   7940 sec   (567 perm/sec)   p_kst 1.551778e-03   p_cons 1.320000e-03   p_joint 4.800000e-05

Joint ci ratio: 2.654895e-01	ci left: 4.192616e-05	ci right 5.496073e-05	k: 217	n:4510000
Cons ci ratio: 5.076855e-02	ci left: 1.286657e-03	ci right 1.353897e-03	k: 5953	n:4510000
KS ci ratio: 4.681658e-02	ci left: 1.515765e-03	ci right 1.588646e-03	k: 6999	n:4510000
PCBP1   4510000 perm   7974 sec   (566 perm/sec)   p_kst 1.551885e-03   p_cons 1.319956e-03   p_joint 4.811530e-05

Joint ci ratio: 2.654895e-01	ci left: 4.183341e-05	ci right 5.483913e-05	k: 217	n:4520000
Cons ci ratio: 5.070896e-02	ci left: 1.286868e-03	ci right 1.354038e-03	k: 5967	n:4520000
KS ci ratio: 4.675983e-02	ci left: 1.516129e-03	ci right 1.588937e-03	k: 7016	n:4520000
PCBP1   4520000 perm   8008 sec   (564 perm/sec)   p_kst 1.552212e-03   p_cons 1.320133e-03   p_joint 4.800885e-05

Joint ci ratio: 2.654895e-01	ci left: 4.174106e-05	ci right 5.471808e-05	k: 217	n:4530000
Cons ci ratio: 5.066655e-02	ci left: 1.286207e-03	ci right 1.353285e-03	k: 5977	n:4530000
KS ci ratio: 4.668667e-02	ci left: 1.517582e-03	ci right 1.590342e-03	k: 7038	n:4530000
PCBP1   4530000 perm   8042 sec   (563 perm/sec)   p_kst 1.553642e-03   p_cons 1.319426e-03   p_joint 4.790287e-05

Joint ci ratio: 2.642799e-01	ci left: 4.206040e-05	ci right 5.506726e-05	k: 219	n:4540000
Cons ci ratio: 5.059886e-02	ci left: 1.286854e-03	ci right 1.353873e-03	k: 5993	n:4540000
KS ci ratio: 4.663700e-02	ci left: 1.517505e-03	ci right 1.590182e-03	k: 7053	n:4540000
PCBP1   4540000 perm   8076 sec   (562 perm/sec)   p_kst 1.553524e-03   p_cons 1.320044e-03   p_joint 4.823789e-05

Joint ci ratio: 2.642799e-01	ci left: 4.196796e-05	ci right 5.494624e-05	k: 219	n:4550000
Cons ci ratio: 5.055251e-02	ci left: 1.286413e-03	ci right 1.353346e-03	k: 6004	n:4550000
KS ci ratio: 4.660401e-02	ci left: 1.516342e-03	ci right 1.588911e-03	k: 7063	n:4550000
PCBP1   4550000 perm   8110 sec   (561 perm/sec)   p_kst 1.552308e-03   p_cons 1.319560e-03   p_joint 4.813187e-05

Joint ci ratio: 2.642799e-01	ci left: 4.187592e-05	ci right 5.482574e-05	k: 219	n:4560000
Cons ci ratio: 5.051049e-02	ci left: 1.285757e-03	ci right 1.352598e-03	k: 6014	n:4560000
KS ci ratio: 4.655132e-02	ci left: 1.516484e-03	ci right 1.588976e-03	k: 7079	n:4560000
PCBP1   4560000 perm   8145 sec   (560 perm/sec)   p_kst 1.552412e-03   p_cons 1.318860e-03   p_joint 4.802632e-05

Joint ci ratio: 2.636813e-01	ci left: 4.198863e-05	ci right 5.493904e-05	k: 220	n:4570000
Cons ci ratio: 5.046438e-02	ci left: 1.285320e-03	ci right 1.352076e-03	k: 6025	n:4570000
KS ci ratio: 4.650209e-02	ci left: 1.516410e-03	ci right 1.588819e-03	k: 7094	n:4570000
PCBP1   4570000 perm   8179 sec   (559 perm/sec)   p_kst 1.552298e-03   p_cons 1.318381e-03   p_joint 4.814004e-05

Joint ci ratio: 2.630868e-01	ci left: 4.210088e-05	ci right 5.505180e-05	k: 221	n:4580000
Cons ci ratio: 5.040586e-02	ci left: 1.285532e-03	ci right 1.352219e-03	k: 6039	n:4580000
KS ci ratio: 4.643339e-02	ci left: 1.517631e-03	ci right 1.589989e-03	k: 7115	n:4580000
PCBP1   4580000 perm   8217 sec   (557 perm/sec)   p_kst 1.553493e-03   p_cons 1.318559e-03   p_joint 4.825328e-05

Joint ci ratio: 2.630868e-01	ci left: 4.200915e-05	ci right 5.493187e-05	k: 221	n:4590000
Cons ci ratio: 5.036003e-02	ci left: 1.285097e-03	ci right 1.351700e-03	k: 6050	n:4590000
KS ci ratio: 4.638128e-02	ci left: 1.517770e-03	ci right 1.590051e-03	k: 7131	n:4590000
PCBP1   4590000 perm   8252 sec   (556 perm/sec)   p_kst 1.553595e-03   p_cons 1.318083e-03   p_joint 4.814815e-05

Joint ci ratio: 2.624962e-01	ci left: 4.212090e-05	ci right 5.504413e-05	k: 222	n:4600000
Cons ci ratio: 5.030602e-02	ci left: 1.285094e-03	ci right 1.351623e-03	k: 6063	n:4600000
KS ci ratio: 4.633258e-02	ci left: 1.517693e-03	ci right 1.589893e-03	k: 7146	n:4600000
PCBP1   4600000 perm   8287 sec   (555 perm/sec)   p_kst 1.553478e-03   p_cons 1.318043e-03   p_joint 4.826087e-05

Joint ci ratio: 2.613269e-01	ci left: 4.243489e-05	ci right 5.538698e-05	k: 224	n:4610000
Cons ci ratio: 5.022736e-02	ci left: 1.286376e-03	ci right 1.352864e-03	k: 6082	n:4610000
KS ci ratio: 4.628080e-02	ci left: 1.517832e-03	ci right 1.589955e-03	k: 7162	n:4610000
PCBP1   4610000 perm   8321 sec   (554 perm/sec)   p_kst 1.553579e-03   p_cons 1.319306e-03   p_joint 4.859002e-05

Joint ci ratio: 2.607481e-01	ci left: 4.254533e-05	ci right 5.549768e-05	k: 225	n:4620000
Cons ci ratio: 5.015731e-02	ci left: 1.287225e-03	ci right 1.353662e-03	k: 6099	n:4620000
KS ci ratio: 4.622920e-02	ci left: 1.517970e-03	ci right 1.590017e-03	k: 7178	n:4620000
PCBP1   4620000 perm   8356 sec   (553 perm/sec)   p_kst 1.553680e-03   p_cons 1.320130e-03   p_joint 4.870130e-05

Joint ci ratio: 2.607481e-01	ci left: 4.245344e-05	ci right 5.537781e-05	k: 225	n:4630000
Cons ci ratio: 5.010805e-02	ci left: 1.287004e-03	ci right 1.353363e-03	k: 6111	n:4630000
KS ci ratio: 4.617455e-02	ci left: 1.518320e-03	ci right 1.590297e-03	k: 7195	n:4630000
PCBP1   4630000 perm   8391 sec   (552 perm/sec)   p_kst 1.553996e-03   p_cons 1.319870e-03   p_joint 4.859611e-05

Joint ci ratio: 2.607481e-01	ci left: 4.236195e-05	ci right 5.525846e-05	k: 225	n:4640000
Cons ci ratio: 5.007532e-02	ci left: 1.285933e-03	ci right 1.352192e-03	k: 6119	n:4640000
KS ci ratio: 4.611690e-02	ci left: 1.518883e-03	ci right 1.590793e-03	k: 7213	n:4640000
PCBP1   4640000 perm   8426 sec   (551 perm/sec)   p_kst 1.554526e-03   p_cons 1.318750e-03   p_joint 4.849138e-05

Joint ci ratio: 2.607482e-01	ci left: 4.227084e-05	ci right 5.513963e-05	k: 225	n:4650000
Cons ci ratio: 5.005083e-02	ci left: 1.284442e-03	ci right 1.350590e-03	k: 6125	n:4650000
KS ci ratio: 4.608499e-02	ci left: 1.517742e-03	ci right 1.589548e-03	k: 7223	n:4650000
PCBP1   4650000 perm   8461 sec   (550 perm/sec)   p_kst 1.553333e-03   p_cons 1.317204e-03   p_joint 4.838710e-05

Joint ci ratio: 2.607482e-01	ci left: 4.218013e-05	ci right 5.502130e-05	k: 225	n:4660000
Cons ci ratio: 5.000596e-02	ci left: 1.284017e-03	ci right 1.350082e-03	k: 6136	n:4660000
KS ci ratio: 4.603723e-02	ci left: 1.517667e-03	ci right 1.589393e-03	k: 7238	n:4660000
PCBP1   4660000 perm   8496 sec   (548 perm/sec)   p_kst 1.553219e-03   p_cons 1.316738e-03   p_joint 4.828326e-05

Joint ci ratio: 2.636815e-01	ci left: 4.108951e-05	ci right 5.376261e-05	k: 220	n:4670000
Cons ci ratio: 4.995308e-02	ci left: 1.284016e-03	ci right 1.350009e-03	k: 6149	n:4670000
KS ci ratio: 4.600549e-02	ci left: 1.516534e-03	ci right 1.588155e-03	k: 7248	n:4670000
PCBP1   4670000 perm   8531 sec   (547 perm/sec)   p_kst 1.552034e-03   p_cons 1.316702e-03   p_joint 4.710921e-05

Joint ci ratio: 2.619097e-01	ci left: 4.160052e-05	ci right 5.433089e-05	k: 223	n:4680000
Cons ci ratio: 4.989227e-02	ci left: 1.284438e-03	ci right 1.350370e-03	k: 6164	n:4680000
KS ci ratio: 4.594846e-02	ci left: 1.517095e-03	ci right 1.588652e-03	k: 7266	n:4680000
PCBP1   4680000 perm   8567 sec   (546 perm/sec)   p_kst 1.552564e-03   p_cons 1.317094e-03   p_joint 4.764957e-05

Joint ci ratio: 2.607482e-01	ci left: 4.191032e-05	ci right 5.466936e-05	k: 225	n:4690000
Cons ci ratio: 4.984783e-02	ci left: 1.284015e-03	ci right 1.349865e-03	k: 6175	n:4690000
KS ci ratio: 4.588850e-02	ci left: 1.517865e-03	ci right 1.589362e-03	k: 7285	n:4690000
PCBP1   4690000 perm   8602 sec   (545 perm/sec)   p_kst 1.553305e-03   p_cons 1.316631e-03   p_joint 4.797441e-05

Joint ci ratio: 2.607482e-01	ci left: 4.182115e-05	ci right 5.455304e-05	k: 225	n:4700000
Cons ci ratio: 4.979545e-02	ci left: 1.284015e-03	ci right 1.349794e-03	k: 6188	n:4700000
KS ci ratio: 4.584763e-02	ci left: 1.517370e-03	ci right 1.588778e-03	k: 7298	n:4700000
PCBP1   4700000 perm   8638 sec   (544 perm/sec)   p_kst 1.552766e-03   p_cons 1.316596e-03   p_joint 4.787234e-05

Joint ci ratio: 2.601732e-01	ci left: 4.193081e-05	ci right 5.466336e-05	k: 226	n:4710000
Cons ci ratio: 4.977137e-02	ci left: 1.282546e-03	ci right 1.348218e-03	k: 6194	n:4710000
KS ci ratio: 4.580373e-02	ci left: 1.517087e-03	ci right 1.588412e-03	k: 7312	n:4710000
PCBP1   4710000 perm   8676 sec   (543 perm/sec)   p_kst 1.552442e-03   p_cons 1.315074e-03   p_joint 4.798301e-05

Joint ci ratio: 2.630870e-01	ci left: 4.085212e-05	ci right 5.341892e-05	k: 221	n:4720000
Cons ci ratio: 4.972725e-02	ci left: 1.282131e-03	ci right 1.347721e-03	k: 6205	n:4720000
KS ci ratio: 4.573495e-02	ci left: 1.518480e-03	ci right 1.589761e-03	k: 7334	n:4720000
PCBP1   4720000 perm   8711 sec   (542 perm/sec)   p_kst 1.553814e-03   p_cons 1.314619e-03   p_joint 4.682203e-05

Joint ci ratio: 2.630870e-01	ci left: 4.076575e-05	ci right 5.330598e-05	k: 221	n:4730000
Cons ci ratio: 4.967125e-02	ci left: 1.282343e-03	ci right 1.347868e-03	k: 6219	n:4730000
KS ci ratio: 4.570072e-02	ci left: 1.517569e-03	ci right 1.588752e-03	k: 7345	n:4730000
PCBP1   4730000 perm   8747 sec   (541 perm/sec)   p_kst 1.552854e-03   p_cons 1.314799e-03   p_joint 4.672304e-05

Joint ci ratio: 2.630870e-01	ci left: 4.067975e-05	ci right 5.319352e-05	k: 221	n:4740000
Cons ci ratio: 4.962740e-02	ci left: 1.281930e-03	ci right 1.347374e-03	k: 6230	n:4740000
KS ci ratio: 4.564482e-02	ci left: 1.518121e-03	ci right 1.589241e-03	k: 7363	n:4740000
PCBP1   4740000 perm   8783 sec   (540 perm/sec)   p_kst 1.553376e-03   p_cons 1.314346e-03   p_joint 4.662447e-05

Joint ci ratio: 2.630870e-01	ci left: 4.059410e-05	ci right 5.308154e-05	k: 221	n:4750000
Cons ci ratio: 4.957571e-02	ci left: 1.281934e-03	ci right 1.347308e-03	k: 6243	n:4750000
KS ci ratio: 4.560150e-02	ci left: 1.517839e-03	ci right 1.588876e-03	k: 7377	n:4750000
PCBP1   4750000 perm   8817 sec   (539 perm/sec)   p_kst 1.553053e-03   p_cons 1.314316e-03   p_joint 4.652632e-05

Joint ci ratio: 2.624964e-01	ci left: 4.070507e-05	ci right 5.319391e-05	k: 222	n:4760000
Cons ci ratio: 4.952815e-02	ci left: 1.281730e-03	ci right 1.347030e-03	k: 6255	n:4760000
KS ci ratio: 4.553672e-02	ci left: 1.519012e-03	ci right 1.590000e-03	k: 7398	n:4760000
PCBP1   4760000 perm   8854 sec   (538 perm/sec)   p_kst 1.554202e-03   p_cons 1.314076e-03   p_joint 4.663866e-05

Joint ci ratio: 2.624965e-01	ci left: 4.061973e-05	ci right 5.308239e-05	k: 222	n:4770000
Cons ci ratio: 4.948467e-02	ci left: 1.281321e-03	ci right 1.346541e-03	k: 6266	n:4770000
KS ci ratio: 4.552139e-02	ci left: 1.516864e-03	ci right 1.587727e-03	k: 7403	n:4770000
PCBP1   4770000 perm   8889 sec   (537 perm/sec)   p_kst 1.551992e-03   p_cons 1.313627e-03   p_joint 4.654088e-05

Joint ci ratio: 2.624965e-01	ci left: 4.053475e-05	ci right 5.297134e-05	k: 222	n:4780000
Cons ci ratio: 4.944131e-02	ci left: 1.280913e-03	ci right 1.346053e-03	k: 6277	n:4780000
KS ci ratio: 4.547842e-02	ci left: 1.516586e-03	ci right 1.587368e-03	k: 7417	n:4780000
PCBP1   4780000 perm   8926 sec   (536 perm/sec)   p_kst 1.551674e-03   p_cons 1.313180e-03   p_joint 4.644351e-05

Joint ci ratio: 2.636816e-01	ci left: 4.006013e-05	ci right 5.241575e-05	k: 220	n:4790000
Cons ci ratio: 4.937449e-02	ci left: 1.281744e-03	ci right 1.346836e-03	k: 6294	n:4790000
KS ci ratio: 4.543863e-02	ci left: 1.516103e-03	ci right 1.586798e-03	k: 7430	n:4790000
PCBP1   4790000 perm   8961 sec   (535 perm/sec)   p_kst 1.551148e-03   p_cons 1.313987e-03   p_joint 4.592902e-05

Joint ci ratio: 2.636816e-01	ci left: 3.997667e-05	ci right 5.230655e-05	k: 220	n:4800000
Cons ci ratio: 4.930011e-02	ci left: 1.282983e-03	ci right 1.348037e-03	k: 6313	n:4800000
KS ci ratio: 4.539895e-02	ci left: 1.515622e-03	ci right 1.586232e-03	k: 7443	n:4800000
PCBP1   4800000 perm   8998 sec   (533 perm/sec)   p_kst 1.550625e-03   p_cons 1.315208e-03   p_joint 4.583333e-05

Joint ci ratio: 2.630871e-01	ci left: 4.008773e-05	ci right 5.241940e-05	k: 221	n:4810000
Cons ci ratio: 4.926894e-02	ci left: 1.281959e-03	ci right 1.346918e-03	k: 6321	n:4810000
KS ci ratio: 4.535937e-02	ci left: 1.515143e-03	ci right 1.585667e-03	k: 7456	n:4810000
PCBP1   4810000 perm   9033 sec   (532 perm/sec)   p_kst 1.550104e-03   p_cons 1.314137e-03   p_joint 4.594595e-05

Joint ci ratio: 2.630871e-01	ci left: 4.000456e-05	ci right 5.231064e-05	k: 221	n:4820000
Cons ci ratio: 4.923782e-02	ci left: 1.280938e-03	ci right 1.345804e-03	k: 6329	n:4820000
KS ci ratio: 4.532902e-02	ci left: 1.514050e-03	ci right 1.584476e-03	k: 7466	n:4820000
PCBP1   4820000 perm   9069 sec   (531 perm/sec)   p_kst 1.548963e-03   p_cons 1.313071e-03   p_joint 4.585062e-05

Joint ci ratio: 2.630871e-01	ci left: 3.992174e-05	ci right 5.220234e-05	k: 221	n:4830000
Cons ci ratio: 4.916794e-02	ci left: 1.281967e-03	ci right 1.346790e-03	k: 6347	n:4830000
KS ci ratio: 4.530479e-02	ci left: 1.512553e-03	ci right 1.582870e-03	k: 7474	n:4830000
PCBP1   4830000 perm   9105 sec   (530 perm/sec)   p_kst 1.547412e-03   p_cons 1.314079e-03   p_joint 4.575569e-05

Joint ci ratio: 2.630871e-01	ci left: 3.983925e-05	ci right 5.209449e-05	k: 221	n:4840000
Cons ci ratio: 4.911380e-02	ci left: 1.282176e-03	ci right 1.346936e-03	k: 6361	n:4840000
KS ci ratio: 4.523521e-02	ci left: 1.514127e-03	ci right 1.584406e-03	k: 7497	n:4840000
PCBP1   4840000 perm   9142 sec   (529 perm/sec)   p_kst 1.548967e-03   p_cons 1.314256e-03   p_joint 4.566116e-05

Joint ci ratio: 2.624966e-01	ci left: 3.994971e-05	ci right 5.220681e-05	k: 222	n:4850000
Cons ci ratio: 4.905985e-02	ci left: 1.282383e-03	ci right 1.347081e-03	k: 6375	n:4850000
KS ci ratio: 4.517197e-02	ci left: 1.515286e-03	ci right 1.585518e-03	k: 7518	n:4850000
PCBP1   4850000 perm   9178 sec   (528 perm/sec)   p_kst 1.550103e-03   p_cons 1.314433e-03   p_joint 4.577320e-05

Joint ci ratio: 2.624966e-01	ci left: 3.986751e-05	ci right 5.209939e-05	k: 222	n:4860000
Cons ci ratio: 4.900607e-02	ci left: 1.282590e-03	ci right 1.347225e-03	k: 6389	n:4860000
KS ci ratio: 4.512399e-02	ci left: 1.515423e-03	ci right 1.585585e-03	k: 7534	n:4860000
PCBP1   4860000 perm   9214 sec   (527 perm/sec)   p_kst 1.550206e-03   p_cons 1.314609e-03   p_joint 4.567901e-05

Joint ci ratio: 2.624966e-01	ci left: 3.978565e-05	ci right 5.199241e-05	k: 222	n:4870000
Cons ci ratio: 4.895247e-02	ci left: 1.282796e-03	ci right 1.347368e-03	k: 6403	n:4870000
KS ci ratio: 4.507615e-02	ci left: 1.515559e-03	ci right 1.585651e-03	k: 7550	n:4870000
PCBP1   4870000 perm   9250 sec   (526 perm/sec)   p_kst 1.550308e-03   p_cons 1.314784e-03   p_joint 4.558522e-05

Joint ci ratio: 2.624966e-01	ci left: 3.970412e-05	ci right 5.188587e-05	k: 222	n:4880000
Cons ci ratio: 4.891049e-02	ci left: 1.282393e-03	ci right 1.346889e-03	k: 6414	n:4880000
KS ci ratio: 4.504934e-02	ci left: 1.514277e-03	ci right 1.584267e-03	k: 7559	n:4880000
PCBP1   4880000 perm   9286 sec   (526 perm/sec)   p_kst 1.548975e-03   p_cons 1.314344e-03   p_joint 4.549180e-05

Joint ci ratio: 2.624966e-01	ci left: 3.962293e-05	ci right 5.177976e-05	k: 222	n:4890000
Cons ci ratio: 4.886482e-02	ci left: 1.282195e-03	ci right 1.346619e-03	k: 6426	n:4890000
KS ci ratio: 4.501067e-02	ci left: 1.513809e-03	ci right 1.583716e-03	k: 7572	n:4890000
PCBP1   4890000 perm   9323 sec   (524 perm/sec)   p_kst 1.548466e-03   p_cons 1.314110e-03   p_joint 4.539877e-05

Joint ci ratio: 2.619100e-01	ci left: 3.973273e-05	ci right 5.189155e-05	k: 223	n:4900000
Cons ci ratio: 4.881547e-02	ci left: 1.282199e-03	ci right 1.346556e-03	k: 6439	n:4900000
KS ci ratio: 4.496913e-02	ci left: 1.513545e-03	ci right 1.583373e-03	k: 7586	n:4900000
PCBP1   4900000 perm   9361 sec   (523 perm/sec)   p_kst 1.548163e-03   p_cons 1.314082e-03   p_joint 4.551020e-05

Joint ci ratio: 2.613273e-01	ci left: 3.984212e-05	ci right 5.200286e-05	k: 224	n:4910000
Cons ci ratio: 4.876628e-02	ci left: 1.282203e-03	ci right 1.346493e-03	k: 6452	n:4910000
KS ci ratio: 4.493067e-02	ci left: 1.513080e-03	ci right 1.582826e-03	k: 7599	n:4910000
PCBP1   4910000 perm   9398 sec   (522 perm/sec)   p_kst 1.547658e-03   p_cons 1.314053e-03   p_joint 4.562118e-05

Joint ci ratio: 2.613273e-01	ci left: 3.976114e-05	ci right 5.189716e-05	k: 224	n:4920000
Cons ci ratio: 4.870969e-02	ci left: 1.282608e-03	ci right 1.346843e-03	k: 6467	n:4920000
KS ci ratio: 4.488935e-02	ci left: 1.512818e-03	ci right 1.582486e-03	k: 7613	n:4920000
PCBP1   4920000 perm   9435 sec   (521 perm/sec)   p_kst 1.547358e-03   p_cons 1.314431e-03   p_joint 4.552846e-05

Joint ci ratio: 2.613273e-01	ci left: 3.968049e-05	ci right 5.179190e-05	k: 224	n:4930000
Cons ci ratio: 4.864954e-02	ci left: 1.283213e-03	ci right 1.347396e-03	k: 6483	n:4930000
KS ci ratio: 4.482754e-02	ci left: 1.513961e-03	ci right 1.583584e-03	k: 7634	n:4930000
PCBP1   4930000 perm   9471 sec   (521 perm/sec)   p_kst 1.548479e-03   p_cons 1.315010e-03   p_joint 4.543611e-05

Joint ci ratio: 2.607485e-01	ci left: 3.978935e-05	ci right 5.190270e-05	k: 225	n:4940000
Cons ci ratio: 4.860459e-02	ci left: 1.283015e-03	ci right 1.347127e-03	k: 6495	n:4940000
KS ci ratio: 4.479531e-02	ci left: 1.513098e-03	ci right 1.582630e-03	k: 7645	n:4940000
PCBP1   4940000 perm   9509 sec   (519 perm/sec)   p_kst 1.547571e-03   p_cons 1.314777e-03   p_joint 4.554656e-05

Joint ci ratio: 2.601735e-01	ci left: 3.989780e-05	ci right 5.201302e-05	k: 226	n:4950000
Cons ci ratio: 4.854483e-02	ci left: 1.283616e-03	ci right 1.347677e-03	k: 6511	n:4950000
KS ci ratio: 4.474558e-02	ci left: 1.513438e-03	ci right 1.582905e-03	k: 7662	n:4950000
PCBP1   4950000 perm   9547 sec   (519 perm/sec)   p_kst 1.547879e-03   p_cons 1.315354e-03   p_joint 4.565657e-05

Joint ci ratio: 2.596023e-01	ci left: 4.000584e-05	ci right 5.212288e-05	k: 227	n:4960000
Cons ci ratio: 4.848901e-02	ci left: 1.284015e-03	ci right 1.348021e-03	k: 6526	n:4960000
KS ci ratio: 4.470186e-02	ci left: 1.513377e-03	ci right 1.582772e-03	k: 7677	n:4960000
PCBP1   4960000 perm   9584 sec   (518 perm/sec)   p_kst 1.547782e-03   p_cons 1.315726e-03   p_joint 4.576613e-05

Joint ci ratio: 2.590349e-01	ci left: 4.011348e-05	ci right 5.223226e-05	k: 228	n:4970000
Cons ci ratio: 4.844079e-02	ci left: 1.284016e-03	ci right 1.347956e-03	k: 6539	n:4970000
KS ci ratio: 4.462922e-02	ci left: 1.515306e-03	ci right 1.584673e-03	k: 7702	n:4970000
PCBP1   4970000 perm   9622 sec   (517 perm/sec)   p_kst 1.549698e-03   p_cons 1.315694e-03   p_joint 4.587525e-05

Joint ci ratio: 2.590349e-01	ci left: 4.003293e-05	ci right 5.212737e-05	k: 228	n:4980000
Cons ci ratio: 4.840381e-02	ci left: 1.283421e-03	ci right 1.347281e-03	k: 6549	n:4980000
KS ci ratio: 4.456559e-02	ci left: 1.516631e-03	ci right 1.585958e-03	k: 7724	n:4980000
PCBP1   4980000 perm   9659 sec   (516 perm/sec)   p_kst 1.551004e-03   p_cons 1.315060e-03   p_joint 4.578313e-05

Joint ci ratio: 2.590349e-01	ci left: 3.995270e-05	ci right 5.202291e-05	k: 228	n:4990000
Cons ci ratio: 4.833373e-02	ci left: 1.284611e-03	ci right 1.348435e-03	k: 6568	n:4990000
KS ci ratio: 4.451375e-02	ci left: 1.517159e-03	ci right 1.586427e-03	k: 7742	n:4990000
PCBP1   4990000 perm   9697 sec   (515 perm/sec)   p_kst 1.551503e-03   p_cons 1.316232e-03   p_joint 4.569138e-05

Joint ci ratio: 2.590349e-01	ci left: 3.987280e-05	ci right 5.191886e-05	k: 228	n:5000000
Cons ci ratio: 4.830068e-02	ci left: 1.283820e-03	ci right 1.347560e-03	k: 6577	n:5000000
KS ci ratio: 4.447644e-02	ci left: 1.516696e-03	ci right 1.585883e-03	k: 7755	n:5000000
PCBP1   5000000 perm   9734 sec   (514 perm/sec)   p_kst 1.551000e-03   p_cons 1.315400e-03   p_joint 4.560000e-05

Outputting figure to mutsig2_images.part000000000126/PCBP1.6_1075_5000000_0.001551_0.0013154_4.56e-05.png
                gene_name: PCBP1
               theta_stop: 0.26 
                    nperm: 5000000 
                     p_ks: 0.0016 
        ci_ks_bounds_left: 0.0015 
       ci_ks_bounds_right: 0.0016 
                   p_cons: 0.0013 
      ci_cons_bounds_left: 0.0013 
     ci_cons_bounds_right: 0.0013 
                  p_joint: 4.56e-05 
     ci_joint_bounds_left: 3.99e-05 
    ci_joint_bounds_right: 5.19e-05 

Current progress: 39 percent done.
PAPD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.353627e-02	ci left: 2.668589e-01	ci right 2.844719e-01	k: 2756	n:10000
Cons ci ratio: 2.972347e-02	ci left: 6.253754e-01	ci right 6.443460e-01	k: 6349	n:10000
KS ci ratio: 1.170113e-01	ci left: 9.496613e-02	ci right 1.068675e-01	k: 1008	n:10000
PAPD7   10000 perm   2 sec   (6261 perm/sec)   p_kst 1.008000e-01   p_cons 6.349000e-01   p_joint 2.756000e-01

Joint ci ratio: 6.820389e-02	ci left: 1.368941e-01	ci right 1.466103e-01	k: 2834	n:20000
Cons ci ratio: 2.125725e-02	ci left: 6.229140e-01	ci right 6.363483e-01	k: 12593	n:20000
KS ci ratio: 8.296989e-02	ci left: 9.621914e-02	ci right 1.045974e-01	k: 2007	n:20000
PAPD7   20000 perm   4 sec   (5480 perm/sec)   p_kst 1.003500e-01   p_cons 6.296500e-01   p_joint 1.417000e-01

Outputting figure to mutsig2_images.part000000000126/PAPD7.5_1677_20000_0.10035_0.62965_0.1417.png
                gene_name: PAPD7
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 40 percent done.
PAPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.597494e-02	ci left: 1.646498e-01	ci right 1.795417e-01	k: 1720	n:10000
Cons ci ratio: 1.049610e-01	ci left: 1.159392e-01	ci right 1.288817e-01	k: 1223	n:10000
KS ci ratio: 8.837333e-02	ci left: 1.570859e-01	ci right 1.717101e-01	k: 1643	n:10000
PAPL   10000 perm   2 sec   (6539 perm/sec)   p_kst 1.643000e-01   p_cons 1.223000e-01   p_joint 1.720000e-01

Joint ci ratio: 6.239950e-02	ci left: 1.596329e-01	ci right 1.699647e-01	k: 3295	n:20000
Cons ci ratio: 7.463747e-02	ci left: 1.166581e-01	ci right 1.257524e-01	k: 2423	n:20000
KS ci ratio: 6.300704e-02	ci left: 1.570167e-01	ci right 1.672817e-01	k: 3242	n:20000
PAPL   20000 perm   3 sec   (5783 perm/sec)   p_kst 1.621000e-01   p_cons 1.211500e-01   p_joint 1.647500e-01

Outputting figure to mutsig2_images.part000000000126/PAPL.5_1365_20000_0.1621_0.12115_0.16475.png
                gene_name: PAPL
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 42 percent done.
PAPOLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.305957e-02	ci left: 4.433082e-01	ci right 4.629191e-01	k: 4531	n:10000
KS ci ratio: 3.166431e-02	ci left: 5.954396e-01	ci right 6.146991e-01	k: 6051	n:10000
PAPOLB   10000 perm   2 sec   (6546 perm/sec)   p_kst 6.051000e-01   p_cons 4.531000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PAPOLB.5_1918_10000_0.6051_0.4531_1.png
                gene_name: PAPOLB
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
PARP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.883211e-02	ci left: 8.047094e-01	ci right 8.201081e-01	k: 8125	n:10000
Cons ci ratio: 5.392946e-02	ci left: 3.362752e-01	ci right 3.550148e-01	k: 3456	n:10000
KS ci ratio: 3.978639e-02	ci left: 4.826547e-01	ci right 5.023497e-01	k: 4925	n:10000
PARP11   10000 perm   1 sec   (6738 perm/sec)   p_kst 4.925000e-01   p_cons 3.456000e-01   p_joint 8.125000e-01

Outputting figure to mutsig2_images.part000000000126/PARP11.5_1049_10000_0.4925_0.3456_0.8125.png
                gene_name: PARP11
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 46 percent done.
PARP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.165721e-01	ci left: 1.270967e-02	ci right 1.757875e-02	k: 150	n:10000
Cons ci ratio: 5.867464e-02	ci left: 2.994543e-01	ci right 3.176574e-01	k: 3085	n:10000
KS ci ratio: 5.896315e-01	ci left: 3.113627e-03	ci right 5.787748e-03	k: 43	n:10000
PARP15   10000 perm   2 sec   (5875 perm/sec)   p_kst 4.300000e-03   p_cons 3.085000e-01   p_joint 1.500000e-02

Joint ci ratio: 1.940254e-01	ci left: 1.805714e-02	ci right 2.198415e-02	k: 399	n:20000
Cons ci ratio: 4.064901e-02	ci left: 3.109013e-01	ci right 3.238518e-01	k: 6347	n:20000
KS ci ratio: 4.346619e-01	ci left: 3.172987e-03	ci right 4.975909e-03	k: 80	n:20000
PARP15   20000 perm   4 sec   (5071 perm/sec)   p_kst 4.000000e-03   p_cons 3.173500e-01   p_joint 1.995000e-02

Joint ci ratio: 1.626208e-01	ci left: 1.745315e-02	ci right 2.057432e-02	k: 569	n:30000
Cons ci ratio: 3.360792e-02	ci left: 3.067258e-01	ci right 3.172440e-01	k: 9359	n:30000
KS ci ratio: 3.512923e-01	ci left: 3.408625e-03	ci right 4.889942e-03	k: 123	n:30000
PARP15   30000 perm   6 sec   (4940 perm/sec)   p_kst 4.100000e-03   p_cons 3.119667e-01   p_joint 1.896667e-02

Joint ci ratio: 1.967616e-01	ci left: 8.857849e-03	ci right 1.081430e-02	k: 392	n:40000
Cons ci ratio: 3.068848e-02	ci left: 2.852575e-01	ci right 2.941731e-01	k: 11588	n:40000
KS ci ratio: 2.991247e-01	ci left: 3.636202e-03	ci right 4.937384e-03	k: 170	n:40000
PARP15   40000 perm   8 sec   (4840 perm/sec)   p_kst 4.250000e-03   p_cons 2.897000e-01   p_joint 9.800000e-03

Joint ci ratio: 1.847859e-01	ci left: 8.095389e-03	ci right 9.762375e-03	k: 445	n:50000
Cons ci ratio: 2.607876e-02	ci left: 3.071628e-01	ci right 3.152991e-01	k: 15561	n:50000
KS ci ratio: 2.637017e-01	ci left: 3.820107e-03	ci right 4.998573e-03	k: 219	n:50000
PARP15   50000 perm   11 sec   (4755 perm/sec)   p_kst 4.380000e-03   p_cons 3.112200e-01   p_joint 8.900000e-03

Joint ci ratio: 1.894717e-01	ci left: 6.412009e-03	ci right 7.769659e-03	k: 424	n:60000
Cons ci ratio: 2.372388e-02	ci left: 3.090080e-01	ci right 3.164435e-01	k: 18763	n:60000
KS ci ratio: 2.362726e-01	ci left: 4.027245e-03	ci right 5.121526e-03	k: 273	n:60000
PARP15   60000 perm   13 sec   (4673 perm/sec)   p_kst 4.550000e-03   p_cons 3.127167e-01   p_joint 7.066667e-03

Joint ci ratio: 1.852329e-01	ci left: 5.768140e-03	ci right 6.959050e-03	k: 444	n:70000
Cons ci ratio: 2.194970e-02	ci left: 3.095655e-01	ci right 3.164500e-01	k: 21910	n:70000
KS ci ratio: 2.200174e-01	ci left: 4.017668e-03	ci right 5.024084e-03	k: 315	n:70000
PARP15   70000 perm   15 sec   (4590 perm/sec)   p_kst 4.500000e-03   p_cons 3.130000e-01   p_joint 6.342857e-03

Joint ci ratio: 1.772728e-01	ci left: 5.536317e-03	ci right 6.624970e-03	k: 485	n:80000
Cons ci ratio: 2.051128e-02	ci left: 3.102235e-01	ci right 3.166650e-01	k: 25075	n:80000
KS ci ratio: 2.075886e-01	ci left: 3.976864e-03	ci right 4.909636e-03	k: 354	n:80000
PARP15   80000 perm   18 sec   (4515 perm/sec)   p_kst 4.425000e-03   p_cons 3.134375e-01   p_joint 6.062500e-03

Joint ci ratio: 1.427318e-01	ci left: 7.717606e-03	ci right 8.914410e-03	k: 747	n:90000
Cons ci ratio: 1.933847e-02	ci left: 3.104031e-01	ci right 3.164756e-01	k: 28209	n:90000
KS ci ratio: 1.941060e-01	ci left: 4.073205e-03	ci right 4.959198e-03	k: 405	n:90000
PARP15   90000 perm   20 sec   (4441 perm/sec)   p_kst 4.500000e-03   p_cons 3.134333e-01   p_joint 8.300000e-03

Joint ci ratio: 1.387378e-01	ci left: 7.370261e-03	ci right 8.478567e-03	k: 791	n:100000
Cons ci ratio: 1.832839e-02	ci left: 3.109742e-01	ci right 3.167366e-01	k: 31385	n:100000
KS ci ratio: 1.831509e-01	ci left: 4.142302e-03	ci right 4.986830e-03	k: 455	n:100000
PARP15   100000 perm   23 sec   (4372 perm/sec)   p_kst 4.550000e-03   p_cons 3.138500e-01   p_joint 7.910000e-03

Joint ci ratio: 1.287670e-01	ci left: 7.816306e-03	ci right 8.900764e-03	k: 918	n:110000
Cons ci ratio: 1.746386e-02	ci left: 3.113937e-01	ci right 3.168888e-01	k: 34555	n:110000
KS ci ratio: 1.749081e-01	ci left: 4.147812e-03	ci right 4.951382e-03	k: 499	n:110000
PARP15   110000 perm   26 sec   (4301 perm/sec)   p_kst 4.536364e-03   p_cons 3.141364e-01   p_joint 8.345455e-03

Joint ci ratio: 1.338188e-01	ci left: 6.624669e-03	ci right 7.582716e-03	k: 851	n:120000
Cons ci ratio: 1.673411e-02	ci left: 3.111582e-01	ci right 3.164174e-01	k: 37654	n:120000
KS ci ratio: 1.670706e-01	ci left: 4.185055e-03	ci right 4.955855e-03	k: 547	n:120000
PARP15   120000 perm   28 sec   (4236 perm/sec)   p_kst 4.558333e-03   p_cons 3.137833e-01   p_joint 7.091667e-03

Joint ci ratio: 1.094153e-01	ci left: 9.241685e-03	ci right 1.031881e-02	k: 1270	n:130000
Cons ci ratio: 1.694728e-02	ci left: 2.890841e-01	ci right 2.940328e-01	k: 37902	n:130000
KS ci ratio: 1.607431e-01	ci left: 4.187709e-03	ci right 4.926966e-03	k: 591	n:130000
PARP15   130000 perm   31 sec   (4173 perm/sec)   p_kst 4.546154e-03   p_cons 2.915538e-01   p_joint 9.769231e-03

Joint ci ratio: 1.322571e-01	ci left: 5.823135e-03	ci right 6.654657e-03	k: 872	n:140000
Cons ci ratio: 1.632760e-02	ci left: 2.892556e-01	ci right 2.940244e-01	k: 40829	n:140000
KS ci ratio: 1.592900e-01	ci left: 3.963975e-03	ci right 4.656802e-03	k: 602	n:140000
PARP15   140000 perm   34 sec   (4071 perm/sec)   p_kst 4.300000e-03   p_cons 2.916357e-01   p_joint 6.228571e-03

Joint ci ratio: 1.297669e-01	ci left: 5.654131e-03	ci right 6.445145e-03	k: 906	n:150000
Cons ci ratio: 1.576720e-02	ci left: 2.895135e-01	ci right 2.941212e-01	k: 43772	n:150000
KS ci ratio: 1.528318e-01	ci left: 4.032853e-03	ci right 4.706526e-03	k: 654	n:150000
PARP15   150000 perm   37 sec   (4000 perm/sec)   p_kst 4.360000e-03   p_cons 2.918133e-01   p_joint 6.040000e-03

Joint ci ratio: 1.291488e-01	ci left: 5.355123e-03	ci right 6.100460e-03	k: 915	n:160000
Cons ci ratio: 1.525181e-02	ci left: 2.899848e-01	ci right 2.944478e-01	k: 46754	n:160000
KS ci ratio: 1.485852e-01	ci left: 4.009341e-03	ci right 4.658822e-03	k: 692	n:160000
PARP15   160000 perm   41 sec   (3931 perm/sec)   p_kst 4.325000e-03   p_cons 2.922125e-01   p_joint 5.718750e-03

Joint ci ratio: 1.038117e-01	ci left: 7.885648e-03	ci right 8.754774e-03	k: 1413	n:170000
Cons ci ratio: 1.479541e-02	ci left: 2.900799e-01	ci right 2.944096e-01	k: 49681	n:170000
KS ci ratio: 1.440813e-01	ci left: 4.022847e-03	ci right 4.653064e-03	k: 736	n:170000
PARP15   170000 perm   44 sec   (3876 perm/sec)   p_kst 4.329412e-03   p_cons 2.922412e-01   p_joint 8.311765e-03

Joint ci ratio: 1.023153e-01	ci left: 7.674832e-03	ci right 8.507794e-03	k: 1455	n:180000
Cons ci ratio: 1.438618e-02	ci left: 2.899223e-01	ci right 2.941289e-01	k: 52564	n:180000
KS ci ratio: 1.391606e-01	ci left: 4.083378e-03	ci right 4.699419e-03	k: 789	n:180000
PARP15   180000 perm   47 sec   (3820 perm/sec)   p_kst 4.383333e-03   p_cons 2.920222e-01   p_joint 8.083333e-03

Joint ci ratio: 1.105533e-01	ci left: 6.210113e-03	ci right 6.941906e-03	k: 1248	n:190000
Cons ci ratio: 1.401127e-02	ci left: 2.897197e-01	ci right 2.938129e-01	k: 55435	n:190000
KS ci ratio: 1.351959e-01	ci left: 4.107346e-03	ci right 4.707929e-03	k: 836	n:190000
PARP15   190000 perm   51 sec   (3746 perm/sec)   p_kst 4.400000e-03   p_cons 2.917632e-01   p_joint 6.568421e-03

Joint ci ratio: 1.136813e-01	ci left: 5.573896e-03	ci right 6.250546e-03	k: 1181	n:200000
Cons ci ratio: 1.365430e-02	ci left: 2.898382e-01	ci right 2.938279e-01	k: 58366	n:200000
KS ci ratio: 1.322297e-01	ci left: 4.085620e-03	ci right 4.668889e-03	k: 874	n:200000
PARP15   200000 perm   54 sec   (3680 perm/sec)   p_kst 4.370000e-03   p_cons 2.918300e-01   p_joint 5.905000e-03

Joint ci ratio: 1.123667e-01	ci left: 5.438014e-03	ci right 6.090028e-03	k: 1209	n:210000
Cons ci ratio: 1.332513e-02	ci left: 2.898895e-01	ci right 2.937829e-01	k: 61285	n:210000
KS ci ratio: 1.299517e-01	ci left: 4.033837e-03	ci right 4.599027e-03	k: 905	n:210000
PARP15   210000 perm   58 sec   (3620 perm/sec)   p_kst 4.309524e-03   p_cons 2.918333e-01   p_joint 5.757143e-03

Joint ci ratio: 1.104698e-01	ci left: 5.376411e-03	ci right 6.009447e-03	k: 1251	n:220000
Cons ci ratio: 1.301882e-02	ci left: 2.899327e-01	ci right 2.937365e-01	k: 64203	n:220000
KS ci ratio: 1.267725e-01	ci left: 4.052861e-03	ci right 4.605779e-03	k: 951	n:220000
PARP15   220000 perm   62 sec   (3577 perm/sec)   p_kst 4.322727e-03   p_cons 2.918318e-01   p_joint 5.686364e-03

Joint ci ratio: 1.084973e-01	ci left: 5.337171e-03	ci right 5.953649e-03	k: 1297	n:230000
Cons ci ratio: 1.272976e-02	ci left: 2.900685e-01	ci right 2.937889e-01	k: 67143	n:230000
KS ci ratio: 1.238157e-01	ci left: 4.070383e-03	ci right 4.611790e-03	k: 997	n:230000
PARP15   230000 perm   65 sec   (3535 perm/sec)   p_kst 4.334783e-03   p_cons 2.919261e-01   p_joint 5.639130e-03

Joint ci ratio: 1.217022e-01	ci left: 4.042135e-03	ci right 4.569946e-03	k: 1032	n:240000
Cons ci ratio: 1.246730e-02	ci left: 2.899235e-01	ci right 2.935649e-01	k: 70018	n:240000
KS ci ratio: 1.212901e-01	ci left: 4.070419e-03	ci right 4.599995e-03	k: 1039	n:240000
PARP15   240000 perm   69 sec   (3483 perm/sec)   p_kst 4.329167e-03   p_cons 2.917417e-01   p_joint 4.300000e-03

Joint ci ratio: 1.196371e-01	ci left: 4.020101e-03	ci right 4.535496e-03	k: 1068	n:250000
Cons ci ratio: 1.221582e-02	ci left: 2.899466e-01	ci right 2.935142e-01	k: 72932	n:250000
KS ci ratio: 1.188029e-01	ci left: 4.078318e-03	ci right 4.597276e-03	k: 1083	n:250000
PARP15   250000 perm   73 sec   (3444 perm/sec)   p_kst 4.332000e-03   p_cons 2.917280e-01   p_joint 4.272000e-03

Joint ci ratio: 1.176737e-01	ci left: 3.999831e-03	ci right 4.503627e-03	k: 1104	n:260000
Cons ci ratio: 1.197763e-02	ci left: 2.900147e-01	ci right 2.935131e-01	k: 75858	n:260000
KS ci ratio: 1.168273e-01	ci left: 4.059572e-03	ci right 4.566960e-03	k: 1120	n:260000
PARP15   260000 perm   76 sec   (3405 perm/sec)   p_kst 4.307692e-03   p_cons 2.917615e-01   p_joint 4.246154e-03

Joint ci ratio: 1.157020e-01	ci left: 3.988320e-03	ci right 4.481674e-03	k: 1142	n:270000
Cons ci ratio: 1.175127e-02	ci left: 2.901338e-01	ci right 2.935670e-01	k: 78799	n:270000
KS ci ratio: 1.144518e-01	ci left: 4.078258e-03	ci right 4.576918e-03	k: 1167	n:270000
PARP15   270000 perm   80 sec   (3366 perm/sec)   p_kst 4.322222e-03   p_cons 2.918481e-01   p_joint 4.229630e-03

Joint ci ratio: 1.132023e-01	ci left: 4.022813e-03	ci right 4.508965e-03	k: 1193	n:280000
Cons ci ratio: 1.154226e-02	ci left: 2.900667e-01	ci right 2.934376e-01	k: 81690	n:280000
KS ci ratio: 1.125416e-01	ci left: 4.071407e-03	ci right 4.560369e-03	k: 1207	n:280000
PARP15   280000 perm   84 sec   (3328 perm/sec)   p_kst 4.310714e-03   p_cons 2.917500e-01   p_joint 4.260714e-03

Joint ci ratio: 9.493526e-02	ci left: 5.567249e-03	ci right 6.125455e-03	k: 1694	n:290000
Cons ci ratio: 1.134015e-02	ci left: 2.901459e-01	ci right 2.934583e-01	k: 84622	n:290000
KS ci ratio: 1.104134e-01	ci left: 4.088566e-03	ci right 4.569699e-03	k: 1254	n:290000
PARP15   290000 perm   88 sec   (3289 perm/sec)   p_kst 4.324138e-03   p_cons 2.918000e-01   p_joint 5.841379e-03

Joint ci ratio: 9.424809e-02	ci left: 5.463022e-03	ci right 6.006593e-03	k: 1719	n:300000
Cons ci ratio: 1.114945e-02	ci left: 2.901770e-01	ci right 2.934337e-01	k: 87541	n:300000
KS ci ratio: 1.085692e-01	ci left: 4.091688e-03	ci right 4.564632e-03	k: 1297	n:300000
PARP15   300000 perm   92 sec   (3252 perm/sec)   p_kst 4.323333e-03   p_cons 2.918033e-01   p_joint 5.730000e-03

Joint ci ratio: 8.412896e-02	ci left: 6.662137e-03	ci right 7.250362e-03	k: 2155	n:310000
Cons ci ratio: 1.096319e-02	ci left: 2.903901e-01	ci right 2.935944e-01	k: 90517	n:310000
KS ci ratio: 1.066946e-01	ci left: 4.104092e-03	ci right 4.569765e-03	k: 1343	n:310000
PARP15   310000 perm   96 sec   (3215 perm/sec)   p_kst 4.332258e-03   p_cons 2.919903e-01   p_joint 6.951613e-03

Joint ci ratio: 8.677025e-02	ci left: 6.062409e-03	ci right 6.615338e-03	k: 2027	n:320000
Cons ci ratio: 1.079347e-02	ci left: 2.903033e-01	ci right 2.934567e-01	k: 93401	n:320000
KS ci ratio: 1.048003e-01	ci left: 4.124917e-03	ci right 4.584130e-03	k: 1392	n:320000
PARP15   320000 perm   101 sec   (3167 perm/sec)   p_kst 4.350000e-03   p_cons 2.918781e-01   p_joint 6.334375e-03

Joint ci ratio: 8.553553e-02	ci left: 6.053635e-03	ci right 6.597514e-03	k: 2086	n:330000
Cons ci ratio: 1.062694e-02	ci left: 2.903945e-01	ci right 2.935000e-01	k: 96342	n:330000
KS ci ratio: 1.029676e-01	ci left: 4.147500e-03	ci right 4.600665e-03	k: 1442	n:330000
PARP15   330000 perm   105 sec   (3132 perm/sec)   p_kst 4.369697e-03   p_cons 2.919455e-01   p_joint 6.321212e-03

Joint ci ratio: 8.497188e-02	ci left: 5.956171e-03	ci right 6.487592e-03	k: 2114	n:340000
Cons ci ratio: 1.047087e-02	ci left: 2.903633e-01	ci right 2.934226e-01	k: 99243	n:340000
KS ci ratio: 1.012960e-01	ci left: 4.163087e-03	ci right 4.610131e-03	k: 1490	n:340000
PARP15   340000 perm   110 sec   (3097 perm/sec)   p_kst 4.382353e-03   p_cons 2.918912e-01   p_joint 6.217647e-03

Joint ci ratio: 8.381132e-02	ci left: 5.951008e-03	ci right 6.474361e-03	k: 2173	n:350000
Cons ci ratio: 1.032134e-02	ci left: 2.903399e-01	ci right 2.933550e-01	k: 102146	n:350000
KS ci ratio: 9.999733e-02	ci left: 4.152764e-03	ci right 4.592647e-03	k: 1529	n:350000
PARP15   350000 perm   114 sec   (3060 perm/sec)   p_kst 4.368571e-03   p_cons 2.918457e-01   p_joint 6.208571e-03

Outputting figure to mutsig2_images.part000000000126/PARP15.5_2154_350000_0.0043686_0.29185_0.0062086.png
                gene_name: PARP15
               theta_stop: 0.100 
                    nperm: 350000 
                     p_ks: 0.0044 
        ci_ks_bounds_left: 0.0042 
       ci_ks_bounds_right: 0.0046 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.0062 
     ci_joint_bounds_left: 0.0060 
    ci_joint_bounds_right: 0.0065 

Current progress: 47 percent done.
PARVB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.655248e-02	ci left: 1.346260e-01	ci right 1.483836e-01	k: 1414	n:10000
Cons ci ratio: 8.181399e-02	ci left: 1.790063e-01	ci right 1.943767e-01	k: 1866	n:10000
KS ci ratio: 8.843771e-02	ci left: 1.568896e-01	ci right 1.715066e-01	k: 1641	n:10000
PARVB   10000 perm   2 sec   (6391 perm/sec)   p_kst 1.641000e-01   p_cons 1.866000e-01   p_joint 1.414000e-01

Outputting figure to mutsig2_images.part000000000126/PARVB.5_1366_10000_0.1641_0.1866_0.1414.png
                gene_name: PARVB
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.15 

Current progress: 49 percent done.
PAX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.846382e-02	ci left: 3.857986e-01	ci right 4.050623e-01	k: 3954	n:10000
Cons ci ratio: 1.317184e-02	ci left: 8.925171e-01	ci right 9.044496e-01	k: 8986	n:10000
KS ci ratio: 7.188542e-02	ci left: 2.208930e-01	ci right 2.374651e-01	k: 2291	n:10000
PAX4   10000 perm   2 sec   (6349 perm/sec)   p_kst 2.291000e-01   p_cons 8.986000e-01   p_joint 3.954000e-01

Outputting figure to mutsig2_images.part000000000126/PAX4.5_1068_10000_0.2291_0.8986_0.3954.png
                gene_name: PAX4
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 51 percent done.
PAX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.830889e-02	ci left: 6.478024e-01	ci right 6.665060e-01	k: 6572	n:10000
Cons ci ratio: 6.798590e-02	ci left: 2.409439e-01	ci right 2.580023e-01	k: 2494	n:10000
KS ci ratio: 2.467494e-02	ci left: 7.072516e-01	ci right 7.250223e-01	k: 7162	n:10000
PAX6   10000 perm   1 sec   (6913 perm/sec)   p_kst 7.162000e-01   p_cons 2.494000e-01   p_joint 6.572000e-01

Outputting figure to mutsig2_images.part000000000126/PAX6.5_1355_10000_0.7162_0.2494_0.6572.png
                gene_name: PAX6
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 53 percent done.
PBXIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.692006e-02	ci left: 6.702522e-01	ci right 6.886432e-01	k: 6795	n:10000
Cons ci ratio: 9.602481e-04	ci left: 9.988336e-01	ci right 9.998376e-01	k: 9995	n:10000
KS ci ratio: 3.942206e-02	ci left: 4.872524e-01	ci right 5.069493e-01	k: 4971	n:10000
PBXIP1   10000 perm   2 sec   (5852 perm/sec)   p_kst 4.971000e-01   p_cons 9.995000e-01   p_joint 6.795000e-01

Outputting figure to mutsig2_images.part000000000126/PBXIP1.5_2236_10000_0.4971_0.9995_0.6795.png
                gene_name: PBXIP1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 54 percent done.
PCDH11Y
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.249880e-02	ci left: 5.828939e-01	ci right 6.022522e-01	k: 5926	n:10000
Cons ci ratio: 6.990893e-02	ci left: 2.307670e-01	ci right 2.475852e-01	k: 2391	n:10000
KS ci ratio: 1.721173e-02	ci left: 8.310374e-01	ci right 8.455650e-01	k: 8384	n:10000
PCDH11Y   10000 perm   2 sec   (5785 perm/sec)   p_kst 8.384000e-01   p_cons 2.391000e-01   p_joint 5.926000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH11Y.5_4101_10000_0.8384_0.2391_0.5926.png
                gene_name: PCDH11Y
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 56 percent done.
PAPSS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.397226e-02	ci left: 7.189609e-01	ci right 7.365063e-01	k: 7278	n:10000
Cons ci ratio: 1.343746e-02	ci left: 8.887237e-01	ci right 9.008452e-01	k: 8949	n:10000
KS ci ratio: 4.127937e-02	ci left: 4.642721e-01	ci right 4.839430e-01	k: 4741	n:10000
PAPSS2   10000 perm   2 sec   (6173 perm/sec)   p_kst 4.741000e-01   p_cons 8.949000e-01   p_joint 7.278000e-01

Outputting figure to mutsig2_images.part000000000126/PAPSS2.4_1912_10000_0.4741_0.8949_0.7278.png
                gene_name: PAPSS2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 58 percent done.
PARD3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.301904e-02	ci left: 1.746777e-01	ci right 1.899078e-01	k: 1822	n:10000
Cons ci ratio: 1.557042e-01	ci left: 5.494237e-02	ci right 6.431621e-02	k: 595	n:10000
KS ci ratio: 5.877102e-02	ci left: 2.987602e-01	ci right 3.169519e-01	k: 3078	n:10000
PARD3B   10000 perm   2 sec   (5627 perm/sec)   p_kst 3.078000e-01   p_cons 5.950000e-02   p_joint 1.822000e-01

Joint ci ratio: 8.317725e-02	ci left: 9.577751e-02	ci right 1.041392e-01	k: 1998	n:20000
Cons ci ratio: 1.149490e-01	ci left: 5.178301e-02	ci right 5.814716e-02	k: 1098	n:20000
KS ci ratio: 4.147477e-02	ci left: 3.023009e-01	ci right 3.151548e-01	k: 6174	n:20000
PARD3B   20000 perm   4 sec   (4951 perm/sec)   p_kst 3.087000e-01   p_cons 5.490000e-02   p_joint 9.990000e-02

Joint ci ratio: 5.879903e-02	ci left: 1.252263e-01	ci right 1.328457e-01	k: 3870	n:30000
Cons ci ratio: 9.202437e-02	ci left: 5.440283e-02	ci right 5.968336e-02	k: 1710	n:30000
KS ci ratio: 3.387594e-02	ci left: 3.033419e-01	ci right 3.138285e-01	k: 9257	n:30000
PARD3B   30000 perm   6 sec   (4794 perm/sec)   p_kst 3.085667e-01   p_cons 5.700000e-02   p_joint 1.290000e-01

Outputting figure to mutsig2_images.part000000000126/PARD3B.4_3710_30000_0.30857_0.057_0.129.png
                gene_name: PARD3B
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 60 percent done.
PARP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.055796e-02	ci left: 1.506072e-01	ci right 1.649928e-01	k: 1577	n:10000
Cons ci ratio: 1.631092e-01	ci left: 5.013112e-02	ci right 5.913054e-02	k: 545	n:10000
KS ci ratio: 1.609381e-01	ci left: 5.147727e-02	ci right 6.058353e-02	k: 559	n:10000
PARP1   10000 perm   2 sec   (6060 perm/sec)   p_kst 5.590000e-02   p_cons 5.450000e-02   p_joint 1.577000e-01

Joint ci ratio: 1.046107e-01	ci left: 6.215831e-02	ci right 6.906863e-02	k: 1311	n:20000
Cons ci ratio: 1.139107e-01	ci left: 5.270727e-02	ci right 5.912260e-02	k: 1117	n:20000
KS ci ratio: 1.141271e-01	ci left: 5.251267e-02	ci right 5.891727e-02	k: 1113	n:20000
PARP1   20000 perm   4 sec   (5298 perm/sec)   p_kst 5.565000e-02   p_cons 5.585000e-02   p_joint 6.555000e-02

Joint ci ratio: 1.025990e-01	ci left: 4.401455e-02	ci right 4.880712e-02	k: 1391	n:30000
Cons ci ratio: 9.005926e-02	ci left: 5.671872e-02	ci right 6.210033e-02	k: 1781	n:30000
KS ci ratio: 9.257069e-02	ci left: 5.378330e-02	ci right 5.903635e-02	k: 1691	n:30000
PARP1   30000 perm   6 sec   (5116 perm/sec)   p_kst 5.636667e-02   p_cons 5.936667e-02   p_joint 4.636667e-02

Joint ci ratio: 8.577258e-02	ci left: 4.749255e-02	ci right 5.177313e-02	k: 1984	n:40000
Cons ci ratio: 7.757819e-02	ci left: 5.766763e-02	ci right 6.234650e-02	k: 2399	n:40000
KS ci ratio: 7.977612e-02	ci left: 5.464959e-02	ci right 5.921500e-02	k: 2276	n:40000
PARP1   40000 perm   8 sec   (4873 perm/sec)   p_kst 5.690000e-02   p_cons 5.997500e-02   p_joint 4.960000e-02

Outputting figure to mutsig2_images.part000000000126/PARP1.4_3137_40000_0.0569_0.059975_0.0496.png
                gene_name: PARP1
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.052 

Current progress: 61 percent done.
PARP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.752127e-02	ci left: 5.119543e-01	ci right 5.316330e-01	k: 5218	n:10000
Cons ci ratio: 1.467656e-02	ci left: 8.705050e-01	ci right 8.834745e-01	k: 8771	n:10000
KS ci ratio: 5.025312e-02	ci left: 3.686820e-01	ci right 3.877890e-01	k: 3782	n:10000
PARP10   10000 perm   2 sec   (5676 perm/sec)   p_kst 3.782000e-01   p_cons 8.771000e-01   p_joint 5.218000e-01

Outputting figure to mutsig2_images.part000000000126/PARP10.4_3122_10000_0.3782_0.8771_0.5218.png
                gene_name: PARP10
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 63 percent done.
PCCB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.924324e-02	ci left: 2.342244e-01	ci right 2.511257e-01	k: 2426	n:10000
Cons ci ratio: 4.085963e-02	ci left: 4.693659e-01	ci right 4.890462e-01	k: 4792	n:10000
KS ci ratio: 1.319447e-01	ci left: 7.572512e-02	ci right 8.652038e-02	k: 810	n:10000
PCCB   10000 perm   2 sec   (5336 perm/sec)   p_kst 8.100000e-02   p_cons 4.792000e-01   p_joint 2.426000e-01

Joint ci ratio: 7.034327e-02	ci left: 1.296521e-01	ci right 1.391545e-01	k: 2687	n:20000
Cons ci ratio: 2.995741e-02	ci left: 4.542724e-01	ci right 4.681388e-01	k: 9224	n:20000
KS ci ratio: 9.171034e-02	ci left: 7.984868e-02	ci right 8.757286e-02	k: 1673	n:20000
PCCB   20000 perm   4 sec   (5194 perm/sec)   p_kst 8.365000e-02   p_cons 4.612000e-01   p_joint 1.343500e-01

Outputting figure to mutsig2_images.part000000000126/PCCB.4_1744_20000_0.08365_0.4612_0.13435.png
                gene_name: PCCB
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 65 percent done.
PCDH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.189480e-02	ci left: 3.537651e-01	ci right 3.727147e-01	k: 3632	n:10000
Cons ci ratio: 8.317272e-03	ci left: 9.528388e-01	ci right 9.608923e-01	k: 9570	n:10000
KS ci ratio: 8.481661e-02	ci left: 1.684829e-01	ci right 1.835063e-01	k: 1759	n:10000
PCDH1   10000 perm   2 sec   (5823 perm/sec)   p_kst 1.759000e-01   p_cons 9.570000e-01   p_joint 3.632000e-01

Outputting figure to mutsig2_images.part000000000126/PCDH1.4_3818_10000_0.1759_0.957_0.3632.png
                gene_name: PCDH1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 67 percent done.
PAPOLA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.138797e-02	ci left: 7.622312e-01	ci right 7.788109e-01	k: 7706	n:10000
Cons ci ratio: 2.197400e-02	ci left: 7.524148e-01	ci right 7.692330e-01	k: 7609	n:10000
KS ci ratio: 2.864254e-02	ci left: 6.424702e-01	ci right 6.612413e-01	k: 6519	n:10000
PAPOLA   10000 perm   1 sec   (6894 perm/sec)   p_kst 6.519000e-01   p_cons 7.609000e-01   p_joint 7.706000e-01

Outputting figure to mutsig2_images.part000000000126/PAPOLA.3_2326_10000_0.6519_0.7609_0.7706.png
                gene_name: PAPOLA
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 68 percent done.
PARN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.980685e-02	ci left: 6.240687e-01	ci right 6.430535e-01	k: 6336	n:10000
Cons ci ratio: 5.613456e-02	ci left: 3.185017e-01	ci right 3.369988e-01	k: 3277	n:10000
KS ci ratio: 3.952468e-02	ci left: 4.859529e-01	ci right 5.056495e-01	k: 4958	n:10000
PARN   10000 perm   2 sec   (6458 perm/sec)   p_kst 4.958000e-01   p_cons 3.277000e-01   p_joint 6.336000e-01

Outputting figure to mutsig2_images.part000000000126/PARN.3_2016_10000_0.4958_0.3277_0.6336.png
                gene_name: PARN
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 70 percent done.
PARP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.167540e-01	ci left: 9.535564e-02	ci right 1.072778e-01	k: 1012	n:10000
Cons ci ratio: 5.305884e-02	ci left: 3.436272e-01	ci right 3.624585e-01	k: 3530	n:10000
KS ci ratio: 1.890957e-01	ci left: 3.729324e-02	ci right 4.517686e-02	k: 411	n:10000
PARP12   10000 perm   2 sec   (6411 perm/sec)   p_kst 4.110000e-02   p_cons 3.530000e-01   p_joint 1.012000e-01

Joint ci ratio: 9.438160e-02	ci left: 7.564046e-02	ci right 8.318235e-02	k: 1587	n:20000
Cons ci ratio: 3.620054e-02	ci left: 3.628548e-01	ci right 3.762831e-01	k: 7391	n:20000
KS ci ratio: 1.279880e-01	ci left: 4.192594e-02	ci right 4.770733e-02	k: 895	n:20000
PARP12   20000 perm   3 sec   (5720 perm/sec)   p_kst 4.475000e-02   p_cons 3.695500e-01   p_joint 7.935000e-02

Joint ci ratio: 9.112414e-02	ci left: 5.544646e-02	ci right 6.077285e-02	k: 1742	n:30000
Cons ci ratio: 3.108115e-02	ci left: 3.410805e-01	ci right 3.518826e-01	k: 10394	n:30000
KS ci ratio: 1.039772e-01	ci left: 4.287669e-02	ci right 4.761189e-02	k: 1356	n:30000
PARP12   30000 perm   6 sec   (5453 perm/sec)   p_kst 4.520000e-02   p_cons 3.464667e-01   p_joint 5.806667e-02

Joint ci ratio: 7.988778e-02	ci left: 5.450241e-02	ci right 5.906220e-02	k: 2270	n:40000
Cons ci ratio: 2.685625e-02	ci left: 3.428323e-01	ci right 3.521899e-01	k: 13900	n:40000
KS ci ratio: 8.897941e-02	ci left: 4.421228e-02	ci right 4.835390e-02	k: 1850	n:40000
PARP12   40000 perm   8 sec   (5272 perm/sec)   p_kst 4.625000e-02   p_cons 3.475000e-01   p_joint 5.675000e-02

Outputting figure to mutsig2_images.part000000000126/PARP12.3_2154_40000_0.04625_0.3475_0.05675.png
                gene_name: PARP12
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.059 

Current progress: 72 percent done.
PARVG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.031447e-01	ci left: 1.196532e-01	ci right 1.327654e-01	k: 1261	n:10000
Cons ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
KS ci ratio: 1.021345e-02	ci left: 9.315420e-01	ci right 9.412019e-01	k: 9365	n:10000
PARVG   10000 perm   1 sec   (6707 perm/sec)   p_kst 9.365000e-01   p_cons 4.050000e-02   p_joint 1.261000e-01

Joint ci ratio: 6.447230e-02	ci left: 1.509471e-01	ci right 1.610531e-01	k: 3119	n:20000
Cons ci ratio: 1.431237e-01	ci left: 3.355738e-02	ci right 3.877859e-02	k: 722	n:20000
KS ci ratio: 7.216860e-03	ci left: 9.330826e-01	ci right 9.398898e-01	k: 18731	n:20000
PARVG   20000 perm   3 sec   (5764 perm/sec)   p_kst 9.365500e-01   p_cons 3.610000e-02   p_joint 1.559500e-01

Joint ci ratio: 5.427254e-02	ci left: 1.440982e-01	ci right 1.521701e-01	k: 4443	n:30000
Cons ci ratio: 1.161681e-01	ci left: 3.443865e-02	ci right 3.871837e-02	k: 1096	n:30000
KS ci ratio: 5.976579e-03	ci left: 9.319813e-01	ci right 9.376008e-01	k: 28045	n:30000
PARVG   30000 perm   5 sec   (5604 perm/sec)   p_kst 9.348333e-01   p_cons 3.653333e-02   p_joint 1.481000e-01

Joint ci ratio: 4.596062e-02	ci left: 1.503269e-01	ci right 1.574234e-01	k: 6154	n:40000
Cons ci ratio: 1.015332e-01	ci left: 3.409809e-02	ci right 3.776968e-02	k: 1436	n:40000
KS ci ratio: 5.183407e-03	ci left: 9.321838e-01	ci right 9.370528e-01	k: 37386	n:40000
PARVG   40000 perm   7 sec   (5484 perm/sec)   p_kst 9.346500e-01   p_cons 3.590000e-02   p_joint 1.538500e-01

Joint ci ratio: 3.755961e-02	ci left: 1.755096e-01	ci right 1.822478e-01	k: 8943	n:50000
Cons ci ratio: 9.113710e-02	ci left: 3.405157e-02	ci right 3.732262e-02	k: 1783	n:50000
KS ci ratio: 4.671236e-03	ci left: 9.315042e-01	ci right 9.358853e-01	k: 46686	n:50000
PARVG   50000 perm   9 sec   (5373 perm/sec)   p_kst 9.337200e-01   p_cons 3.566000e-02   p_joint 1.788600e-01

Outputting figure to mutsig2_images.part000000000126/PARVG.3_1044_50000_0.93372_0.03566_0.17886.png
                gene_name: PARVG
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.18 

Current progress: 74 percent done.
PATZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.226322e-01	ci left: 8.698787e-02	ci right 9.845066e-02	k: 926	n:10000
Cons ci ratio: 2.483822e-01	ci left: 2.127733e-02	ci right 2.740406e-02	k: 242	n:10000
KS ci ratio: 6.163475e-02	ci left: 2.790384e-01	ci right 2.968853e-01	k: 2879	n:10000
PATZ1   10000 perm   2 sec   (6328 perm/sec)   p_kst 2.879000e-01   p_cons 2.420000e-02   p_joint 9.260000e-02

Joint ci ratio: 8.120554e-02	ci left: 1.000967e-01	ci right 1.086187e-01	k: 2086	n:20000
Cons ci ratio: 1.606734e-01	ci left: 2.657390e-02	ci right 3.126439e-02	k: 577	n:20000
KS ci ratio: 4.361978e-02	ci left: 2.813330e-01	ci right 2.939288e-01	k: 5752	n:20000
PATZ1   20000 perm   3 sec   (5716 perm/sec)   p_kst 2.876000e-01   p_cons 2.885000e-02   p_joint 1.043000e-01

Joint ci ratio: 7.251193e-02	ci left: 8.553884e-02	ci right 9.200772e-02	k: 2662	n:30000
Cons ci ratio: 1.319761e-01	ci left: 2.667845e-02	ci right 3.048025e-02	k: 856	n:30000
KS ci ratio: 3.534079e-02	ci left: 2.856649e-01	ci right 2.959756e-01	k: 8724	n:30000
PATZ1   30000 perm   6 sec   (5288 perm/sec)   p_kst 2.908000e-01   p_cons 2.853333e-02   p_joint 8.873333e-02

Joint ci ratio: 7.994378e-02	ci left: 5.442883e-02	ci right 5.898580e-02	k: 2267	n:40000
Cons ci ratio: 1.128627e-01	ci left: 2.762041e-02	ci right 3.094839e-02	k: 1170	n:40000
KS ci ratio: 3.067730e-02	ci left: 2.854068e-01	ci right 2.943237e-01	k: 11594	n:40000
PATZ1   40000 perm   8 sec   (5158 perm/sec)   p_kst 2.898500e-01   p_cons 2.925000e-02   p_joint 5.667500e-02

Joint ci ratio: 7.383831e-02	ci left: 5.138634e-02	ci right 5.534572e-02	k: 2667	n:50000
Cons ci ratio: 1.011883e-01	ci left: 2.766358e-02	ci right 3.063143e-02	k: 1456	n:50000
KS ci ratio: 2.745029e-02	ci left: 2.857063e-01	ci right 2.936782e-01	k: 14484	n:50000
PATZ1   50000 perm   10 sec   (5010 perm/sec)   p_kst 2.896800e-01   p_cons 2.912000e-02   p_joint 5.334000e-02

Joint ci ratio: 6.728957e-02	ci left: 5.172913e-02	ci right 5.534754e-02	k: 3211	n:60000
Cons ci ratio: 9.219297e-02	ci left: 2.789987e-02	ci right 3.061258e-02	k: 1754	n:60000
KS ci ratio: 2.501805e-02	ci left: 2.867198e-01	ci right 2.940005e-01	k: 17421	n:60000
PATZ1   60000 perm   12 sec   (4916 perm/sec)   p_kst 2.903500e-01   p_cons 2.923333e-02   p_joint 5.351667e-02

Outputting figure to mutsig2_images.part000000000126/PATZ1.3_2367_60000_0.29035_0.029233_0.053517.png
                gene_name: PATZ1
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.055 

Current progress: 75 percent done.
PBX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.241456e-02	ci left: 7.450311e-01	ci right 7.620210e-01	k: 7536	n:10000
Cons ci ratio: 2.442025e-02	ci left: 7.114903e-01	ci right 7.291812e-01	k: 7204	n:10000
KS ci ratio: 2.820218e-02	ci left: 6.495130e-01	ci right 6.681944e-01	k: 6589	n:10000
PBX3   10000 perm   1 sec   (6820 perm/sec)   p_kst 6.589000e-01   p_cons 7.204000e-01   p_joint 7.536000e-01

Outputting figure to mutsig2_images.part000000000126/PBX3.3_1341_10000_0.6589_0.7204_0.7536.png
                gene_name: PBX3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 77 percent done.
PAPLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.859073e-02	ci left: 1.297297e-01	ci right 1.432828e-01	k: 1364	n:10000
Cons ci ratio: 1.282789e-01	ci left: 7.989663e-02	ci right 9.094628e-02	k: 853	n:10000
KS ci ratio: 9.788599e-02	ci left: 1.313941e-01	ci right 1.450174e-01	k: 1381	n:10000
PAPLN   10000 perm   2 sec   (5880 perm/sec)   p_kst 1.381000e-01   p_cons 8.530000e-02   p_joint 1.364000e-01

Joint ci ratio: 7.910556e-02	ci left: 1.050078e-01	ci right 1.137062e-01	k: 2186	n:20000
Cons ci ratio: 9.100027e-02	ci left: 8.102361e-02	ci right 8.879757e-02	k: 1697	n:20000
KS ci ratio: 6.879880e-02	ci left: 1.348245e-01	ci right 1.444805e-01	k: 2792	n:20000
PAPLN   20000 perm   4 sec   (5301 perm/sec)   p_kst 1.396000e-01   p_cons 8.485000e-02   p_joint 1.093000e-01

Outputting figure to mutsig2_images.part000000000126/PAPLN.2_3856_20000_0.1396_0.08485_0.1093.png
                gene_name: PAPLN
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 79 percent done.
PAPSS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.615380e-03	ci left: 9.497099e-01	ci right 9.580231e-01	k: 9540	n:10000
KS ci ratio: 2.514891e-02	ci left: 6.993822e-01	ci right 7.172963e-01	k: 7084	n:10000
PAPSS1   10000 perm   2 sec   (6586 perm/sec)   p_kst 7.084000e-01   p_cons 9.540000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PAPSS1.2_1923_10000_0.7084_0.954_1.png
                gene_name: PAPSS1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
PAQR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.710561e-02	ci left: 6.672307e-01	ci right 6.856665e-01	k: 6765	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
PAQR3   10000 perm   1 sec   (7529 perm/sec)   p_kst 1   p_cons 6.765000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000126/PAQR3.2_960_10000_1_0.6765_1.png
                gene_name: PAQR3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
PAQR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.438058e-02	ci left: 1.699576e-01	ci right 1.850308e-01	k: 1774	n:10000
Cons ci ratio: 1.016296e-01	ci left: 1.228802e-01	ci right 1.361365e-01	k: 1294	n:10000
KS ci ratio: 3.708756e-02	ci left: 5.177583e-01	ci right 5.374256e-01	k: 5276	n:10000
PAQR7   10000 perm   1 sec   (7207 perm/sec)   p_kst 5.276000e-01   p_cons 1.294000e-01   p_joint 1.774000e-01

Joint ci ratio: 5.999594e-02	ci left: 1.705964e-01	ci right 1.811980e-01	k: 3517	n:20000
Cons ci ratio: 7.278719e-02	ci left: 1.220210e-01	ci right 1.312878e-01	k: 2532	n:20000
KS ci ratio: 2.617413e-02	ci left: 5.216531e-01	ci right 5.355386e-01	k: 10572	n:20000
PAQR7   20000 perm   3 sec   (6421 perm/sec)   p_kst 5.286000e-01   p_cons 1.266000e-01   p_joint 1.758500e-01

Outputting figure to mutsig2_images.part000000000126/PAQR7.2_1045_20000_0.5286_0.1266_0.17585.png
                gene_name: PAQR7
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 84 percent done.
PARD6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.053201e-02	ci left: 3.660957e-01	ci right 3.851768e-01	k: 3756	n:10000
Cons ci ratio: 1.037097e-01	ci left: 1.184802e-01	ci right 1.315391e-01	k: 1249	n:10000
KS ci ratio: 5.992136e-02	ci left: 2.906312e-01	ci right 3.086857e-01	k: 2996	n:10000
PARD6A   10000 perm   1 sec   (7376 perm/sec)   p_kst 2.996000e-01   p_cons 1.249000e-01   p_joint 3.756000e-01

Joint ci ratio: 3.330984e-02	ci left: 4.022746e-01	ci right 4.159519e-01	k: 8182	n:20000
Cons ci ratio: 7.283658e-02	ci left: 1.218734e-01	ci right 1.311355e-01	k: 2529	n:20000
KS ci ratio: 4.239620e-02	ci left: 2.930572e-01	ci right 3.058012e-01	k: 5988	n:20000
PARD6A   20000 perm   3 sec   (6515 perm/sec)   p_kst 2.994000e-01   p_cons 1.264500e-01   p_joint 4.091000e-01

Outputting figure to mutsig2_images.part000000000126/PARD6A.2_1053_20000_0.2994_0.12645_0.4091.png
                gene_name: PARD6A
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 86 percent done.
PARD6G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.048516e-02	ci left: 9.282324e-01	ci right 9.381134e-01	k: 9333	n:10000
Cons ci ratio: 7.190577e-02	ci left: 2.207943e-01	ci right 2.373638e-01	k: 2290	n:10000
KS ci ratio: 4.409237e-03	ci left: 9.852332e-01	ci right 9.896760e-01	k: 9876	n:10000
PARD6G   10000 perm   1 sec   (7166 perm/sec)   p_kst 9.876000e-01   p_cons 2.290000e-01   p_joint 9.333000e-01

Outputting figure to mutsig2_images.part000000000126/PARD6G.2_1143_10000_0.9876_0.229_0.9333.png
                gene_name: PARD6G
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 88 percent done.
PARL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.499582e-02	ci left: 4.216640e-01	ci right 4.411760e-01	k: 4314	n:10000
Cons ci ratio: 7.060744e-02	ci left: 2.272116e-01	ci right 2.439427e-01	k: 2355	n:10000
KS ci ratio: 3.256613e-02	ci left: 5.818905e-01	ci right 6.012561e-01	k: 5916	n:10000
PARL   10000 perm   2 sec   (6496 perm/sec)   p_kst 5.916000e-01   p_cons 2.355000e-01   p_joint 4.314000e-01

Outputting figure to mutsig2_images.part000000000126/PARL.2_1180_10000_0.5916_0.2355_0.4314.png
                gene_name: PARL
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 89 percent done.
PARP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.857317e-02	ci left: 6.435768e-01	ci right 6.623341e-01	k: 6530	n:10000
Cons ci ratio: 2.550841e-02	ci left: 6.934318e-01	ci right 7.114501e-01	k: 7025	n:10000
KS ci ratio: 3.375245e-02	ci left: 5.644382e-01	ci right 5.839185e-01	k: 5742	n:10000
PARP2   10000 perm   1 sec   (6836 perm/sec)   p_kst 5.742000e-01   p_cons 7.025000e-01   p_joint 6.530000e-01

Outputting figure to mutsig2_images.part000000000126/PARP2.2_1816_10000_0.5742_0.7025_0.653.png
                gene_name: PARP2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 91 percent done.
PASD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.754627e-02	ci left: 6.600814e-01	ci right 6.786198e-01	k: 6694	n:10000
Cons ci ratio: 2.549620e-02	ci left: 6.936335e-01	ci right 7.116483e-01	k: 7027	n:10000
KS ci ratio: 6.183069e-02	ci left: 2.777507e-01	ci right 2.955737e-01	k: 2866	n:10000
PASD1   10000 perm   2 sec   (6618 perm/sec)   p_kst 2.866000e-01   p_cons 7.027000e-01   p_joint 6.694000e-01

Outputting figure to mutsig2_images.part000000000126/PASD1.2_2382_10000_0.2866_0.7027_0.6694.png
                gene_name: PASD1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 93 percent done.
PATE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.345808e-01	ci left: 7.291428e-02	ci right 8.353297e-02	k: 781	n:10000
Cons ci ratio: 4.458556e-02	ci left: 4.261509e-01	ci right 4.456865e-01	k: 4359	n:10000
KS ci ratio: 2.403906e-01	ci left: 2.278143e-02	ci right 2.909884e-02	k: 258	n:10000
PATE2   10000 perm   1 sec   (7425 perm/sec)   p_kst 2.580000e-02   p_cons 4.359000e-01   p_joint 7.810000e-02

Joint ci ratio: 1.145634e-01	ci left: 5.212349e-02	ci right 5.850656e-02	k: 1105	n:20000
Cons ci ratio: 3.173874e-02	ci left: 4.257688e-01	ci right 4.395507e-01	k: 8653	n:20000
KS ci ratio: 1.796557e-01	ci left: 2.115822e-02	ci right 2.538195e-02	k: 464	n:20000
PATE2   20000 perm   3 sec   (5996 perm/sec)   p_kst 2.320000e-02   p_cons 4.326500e-01   p_joint 5.525000e-02

Joint ci ratio: 8.910624e-02	ci left: 5.789344e-02	ci right 6.332537e-02	k: 1817	n:30000
Cons ci ratio: 2.582142e-02	ci left: 4.288142e-01	ci right 4.400652e-01	k: 13033	n:30000
KS ci ratio: 1.440166e-01	ci left: 2.236198e-02	ci right 2.586435e-02	k: 722	n:30000
PATE2   30000 perm   5 sec   (5939 perm/sec)   p_kst 2.406667e-02   p_cons 4.344333e-01   p_joint 6.056667e-02

Joint ci ratio: 9.765156e-02	ci left: 3.683087e-02	ci right 4.063647e-02	k: 1548	n:40000
Cons ci ratio: 2.230366e-02	ci left: 4.308581e-01	ci right 4.406013e-01	k: 17429	n:40000
KS ci ratio: 1.237396e-01	ci left: 2.295860e-02	ci right 2.601097e-02	k: 978	n:40000
PATE2   40000 perm   7 sec   (5830 perm/sec)   p_kst 2.445000e-02   p_cons 4.357250e-01   p_joint 3.870000e-02

Joint ci ratio: 8.963682e-02	ci left: 3.518627e-02	ci right 3.850778e-02	k: 1841	n:50000
Cons ci ratio: 1.992992e-02	ci left: 4.318470e-01	ci right 4.405604e-01	k: 21810	n:50000
KS ci ratio: 1.108506e-01	ci left: 2.304584e-02	ci right 2.576976e-02	k: 1219	n:50000
PATE2   50000 perm   9 sec   (5713 perm/sec)   p_kst 2.438000e-02   p_cons 4.362000e-01   p_joint 3.682000e-02

Joint ci ratio: 8.210505e-02	ci left: 3.509527e-02	ci right 3.811643e-02	k: 2195	n:60000
Cons ci ratio: 1.817568e-02	ci left: 4.327096e-01	ci right 4.406632e-01	k: 26201	n:60000
KS ci ratio: 1.016919e-01	ci left: 2.293637e-02	ci right 2.540995e-02	k: 1449	n:60000
PATE2   60000 perm   11 sec   (5590 perm/sec)   p_kst 2.415000e-02   p_cons 4.366833e-01   p_joint 3.658333e-02

Joint ci ratio: 7.612260e-02	ci left: 3.510885e-02	ci right 3.790117e-02	k: 2554	n:70000
Cons ci ratio: 1.683082e-02	ci left: 4.329072e-01	ci right 4.402695e-01	k: 30561	n:70000
KS ci ratio: 9.399680e-02	ci left: 2.310215e-02	ci right 2.539466e-02	k: 1696	n:70000
PATE2   70000 perm   13 sec   (5494 perm/sec)   p_kst 2.422857e-02   p_cons 4.365857e-01   p_joint 3.648571e-02

Outputting figure to mutsig2_images.part000000000126/PATE2.2_358_70000_0.024229_0.43659_0.036486.png
                gene_name: PATE2
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 95 percent done.
PAX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.798295e-02	ci left: 6.530352e-01	ci right 6.716701e-01	k: 6624	n:10000
Cons ci ratio: 4.653285e-02	ci left: 4.053188e-01	ci right 4.247308e-01	k: 4150	n:10000
KS ci ratio: 4.803081e-02	ci left: 3.900798e-01	ci right 4.093787e-01	k: 3997	n:10000
PAX2   10000 perm   1 sec   (7128 perm/sec)   p_kst 3.997000e-01   p_cons 4.150000e-01   p_joint 6.624000e-01

Outputting figure to mutsig2_images.part000000000126/PAX2.2_1449_10000_0.3997_0.415_0.6624.png
                gene_name: PAX2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 96 percent done.
PAX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.429577e-03	ci left: 9.906076e-01	ci right 9.940963e-01	k: 9925	n:10000
Cons ci ratio: 1.279515e-01	ci left: 8.028489e-02	ci right 9.135778e-02	k: 857	n:10000
KS ci ratio: 8.020691e-02	ci left: 1.850099e-01	ci right 2.005695e-01	k: 1927	n:10000
PAX7   10000 perm   1 sec   (7274 perm/sec)   p_kst 1.927000e-01   p_cons 8.570000e-02   p_joint 9.925000e-01

Joint ci ratio: 2.842961e-02	ci left: 4.803500e-01	ci right 4.942537e-01	k: 9746	n:20000
Cons ci ratio: 9.156119e-02	ci left: 8.009344e-02	ci right 8.782802e-02	k: 1678	n:20000
KS ci ratio: 5.683430e-02	ci left: 1.866603e-01	ci right 1.976294e-01	k: 3842	n:20000
PAX7   20000 perm   3 sec   (6458 perm/sec)   p_kst 1.921000e-01   p_cons 8.390000e-02   p_joint 4.873000e-01

Outputting figure to mutsig2_images.part000000000126/PAX7.2_1715_20000_0.1921_0.0839_0.4873.png
                gene_name: PAX7
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 98 percent done.
PBK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.198321e-02	ci left: 5.906213e-01	ci right 6.099202e-01	k: 6003	n:10000
Cons ci ratio: 7.735548e-03	ci left: 9.586940e-01	ci right 9.662336e-01	k: 9626	n:10000
KS ci ratio: 5.268928e-02	ci left: 3.468072e-01	ci right 3.656766e-01	k: 3562	n:10000
PBK   10000 perm   1 sec   (7339 perm/sec)   p_kst 3.562000e-01   p_cons 9.626000e-01   p_joint 6.003000e-01

Outputting figure to mutsig2_images.part000000000126/PBK.2_997_10000_0.3562_0.9626_0.6003.png
                gene_name: PBK
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000126
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 126 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1651>
Subject: Job 9894073: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1651>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000127> was used as the working directory.
Started at Sat Oct  6 00:23:26 2012
Results reported at Sat Oct  6 03:39:18 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000127.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000127.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 127  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000127.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11738.44 sec.
    Max Memory :      6297 MB
    Max Swap   :      8797 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
127
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 127
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 127: processing genes 11360 - 11449
Calculating significance of each gene.
Using projection method.
11360	PCDH17	6.764200e-04
11361	PCDH18	3.192560e-03
11362	PCDH19	1.566099e-01
11363	PCDH20	4.735778e-03
11364	PCDH7	5.028797e-01
11365	PCDH8	8.379297e-01
11366	PCDH9	1.466941e-09
11367	PCDHA1	3.260852e-01
11368	PCDHA10	5.871906e-03
11369	PCDHA11	8.063422e-01
11370	PCDHA12	4.669269e-01
11371	PCDHA13	1.098771e-03
11372	PCDHA2	3.911528e-02
11373	PCDHA3	3.356916e-02
11374	PCDHA4	5.957958e-01
11375	PCDHA5	3.630021e-01
11376	PCDHA6	3.681502e-01
11377	PCDHA7	5.828504e-01
11378	PCDHA8	8.363584e-01
11379	PCDHA9	1.136664e-01
11380	PCDHAC1	7.739386e-02
11381	PCDHAC2	2.230983e-01
11382	PCDHB1	1.398786e-01
11383	PCDHB10	3.810311e-01
11384	PCDHB11	3.745475e-01
11385	PCDHB12	2.441562e-02
11386	PCDHB13	4.050673e-02
11387	PCDHB14	2.009240e-01
11388	PCDHB15	6.686887e-02
11389	PCDHB16	1.699864e-03
11390	PCDHB2	2.955512e-04
11391	PCDHB3	1.043755e-02
11392	PCDHB4	1.680429e-01
11393	PCDHB5	1.222228e-04
11394	PCDHB6	2.161377e-01
11395	PCDHB7	3.972985e-03
11396	PCDHB8	2.370087e-01
11397	PCDHB9	5.650636e-01
11398	PCDHGA1	7.134407e-01
11399	PCDHGA10	4.773426e-01
11400	PCDHGA11	4.343375e-01
11401	PCDHGA12	5.924748e-01
11402	PCDHGA2	8.995413e-03
11403	PCDHGA3	2.796377e-01
11404	PCDHGA4	7.697011e-01
11405	PCDHGA5	2.712411e-01
11406	PCDHGA6	3.419594e-01
11407	PCDHGA7	4.959365e-01
11408	PCDHGA8	9.283455e-01
11409	PCDHGA9	2.270468e-01
11410	PCDHGB1	4.425805e-01
In gene PCDHGB2 the following bins exceed PROBCAP:
    READ-AG-A01L	categ 6	N = 2827    n = 1	mu =   3.23e-07
11411	PCDHGB2	1.855856e-01
11412	PCDHGB3	5.544402e-01
11413	PCDHGB4	6.313877e-01
11414	PCDHGB5	2.892849e-01
11415	PCDHGB6	5.897487e-01
11416	PCDHGB7	2.174916e-01
11417	PCDHGC3	5.767170e-01
11418	PCDHGC4	2.195903e-01
In gene PCDHGC5 the following bins exceed PROBCAP:
    COAD-AA-A00K	categ 6	N = 2860    n = 1	mu =   5.86e-07
11419	PCDHGC5	6.512805e-01
11420	PCDP1	2.499220e-01
11421	PCF11	4.066194e-01
11422	PCGF1	4.012503e-01
11423	PCGF2	5.957212e-01
11424	PCGF3	5.338228e-01
11425	PCGF5	3.574109e-01
11426	PCGF6	5.191669e-01
11427	PCID2	8.398416e-02
11428	PCIF1	6.150147e-01
11429	PCK1	6.560874e-01
11430	PCK2	7.767591e-01
11431	PCLO	1.328167e-01
11432	PCM1	7.549683e-01
11433	PCMT1	3.348780e-01
11434	PCMTD1	4.663843e-01
11435	PCMTD2	1
11436	PCNA	7.132029e-02
11437	PCNP	5.249219e-01
11438	PCNT	9.516215e-01
11439	PCNX	7.101357e-01
11440	PCNXL2	9.270059e-01
11441	PCNXL3	9.838404e-01
11442	PCOLCE	5.901569e-01
11443	PCOLCE2	6.102213e-03
11444	PCOTH	1
11445	PCP2	4.019849e-01
11446	PCP4	1
11447	PCP4L1	1.673370e-01
11448	PCSK1	6.582377e-01
11449	PCSK2	4.375167e-01
Done

Running MutSig 2:
Scatter job 127: processing genes 11360 - 11449
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PCLO
Processing conservation and coverage...
64% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.343503e-02	ci left: 4.390178e-01	ci right 4.586120e-01	k: 4488	n:10000
Cons ci ratio: 1.624279e-02	ci left: 8.464166e-01	ci right 8.603769e-01	k: 8535	n:10000
KS ci ratio: 5.765918e-02	ci left: 3.068925e-01	ci right 3.252147e-01	k: 3160	n:10000
PCLO   10000 perm   4 sec   (2322 perm/sec)   p_kst 3.160000e-01   p_cons 8.535000e-01   p_joint 4.488000e-01

Outputting figure to mutsig2_images.part000000000127/PCLO.40_15546_10000_0.316_0.8535_0.4488.png
                gene_name: PCLO
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 1 percent done.
PCDH9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.462208e-02	ci left: 8.713228e-01	ci right 8.842562e-01	k: 8779	n:10000
KS ci ratio: 1.131130e-02	ci left: 9.178069e-01	ci right 9.283451e-01	k: 9232	n:10000
PCDH9   10000 perm   2 sec   (4433 perm/sec)   p_kst 9.232000e-01   p_cons 8.779000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDH9.26_3730_10000_0.9232_0.8779_1.png
                gene_name: PCDH9
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
PCDH17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.005121e-02	ci left: 6.202494e-01	ci right 6.392749e-01	k: 6298	n:10000
KS ci ratio: 8.226108e-03	ci left: 9.537785e-01	ci right 9.617521e-01	k: 9579	n:10000
PCDH17   10000 perm   2 sec   (4782 perm/sec)   p_kst 9.579000e-01   p_cons 6.298000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDH17.21_3496_10000_0.9579_0.6298_1.png
                gene_name: PCDH17
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
PCDH18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.250251e-02	ci left: 2.733932e-01	ci right 2.911338e-01	k: 2822	n:10000
Cons ci ratio: 5.814273e-02	ci left: 3.033218e-01	ci right 3.215876e-01	k: 3124	n:10000
KS ci ratio: 7.411193e-02	ci left: 2.104338e-01	ci right 2.267305e-01	k: 2185	n:10000
PCDH18   10000 perm   2 sec   (4856 perm/sec)   p_kst 2.185000e-01   p_cons 3.124000e-01   p_joint 2.822000e-01

Outputting figure to mutsig2_images.part000000000127/PCDH18.18_3424_10000_0.2185_0.3124_0.2822.png
                gene_name: PCDH18
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 5 percent done.
PCDHA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.393752e-01	ci left: 6.816984e-02	ci right 7.848038e-02	k: 732	n:10000
Cons ci ratio: 5.985006e-02	ci left: 2.911267e-01	ci right 3.091898e-01	k: 3001	n:10000
KS ci ratio: 1.555655e-01	ci left: 5.503869e-02	ci right 6.441983e-02	k: 596	n:10000
PCDHA3   10000 perm   2 sec   (4834 perm/sec)   p_kst 5.960000e-02   p_cons 3.001000e-01   p_joint 7.320000e-02

Joint ci ratio: 8.340923e-02	ci left: 9.528684e-02	ci right 1.036300e-01	k: 1988	n:20000
Cons ci ratio: 4.349241e-02	ci left: 2.825251e-01	ci right 2.951364e-01	k: 5776	n:20000
KS ci ratio: 1.107954e-01	ci left: 5.562767e-02	ci right 6.220129e-02	k: 1177	n:20000
PCDHA3   20000 perm   5 sec   (4388 perm/sec)   p_kst 5.885000e-02   p_cons 2.888000e-01   p_joint 9.940000e-02

Joint ci ratio: 7.850385e-02	ci left: 7.371311e-02	ci right 7.976916e-02	k: 2301	n:30000
Cons ci ratio: 3.547835e-02	ci left: 2.840734e-01	ci right 2.943674e-01	k: 8676	n:30000
KS ci ratio: 9.106868e-02	ci left: 5.551169e-02	ci right 6.084094e-02	k: 1744	n:30000
PCDHA3   30000 perm   7 sec   (4206 perm/sec)   p_kst 5.813333e-02   p_cons 2.892000e-01   p_joint 7.670000e-02

Outputting figure to mutsig2_images.part000000000127/PCDHA3.18_2950_30000_0.058133_0.2892_0.0767.png
                gene_name: PCDHA3
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.080 

Current progress: 6 percent done.
PCDHA13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.797044e-02	ci left: 6.532365e-01	ci right 6.718687e-01	k: 6626	n:10000
Cons ci ratio: 2.306618e-02	ci left: 7.341133e-01	ci right 7.513451e-01	k: 7428	n:10000
KS ci ratio: 4.717107e-02	ci left: 3.987439e-01	ci right 4.181095e-01	k: 4084	n:10000
PCDHA13   10000 perm   2 sec   (4532 perm/sec)   p_kst 4.084000e-01   p_cons 7.428000e-01   p_joint 6.626000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA13.16_2899_10000_0.4084_0.7428_0.6626.png
                gene_name: PCDHA13
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 7 percent done.
PCDHB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.288625e-02	ci left: 4.453040e-01	ci right 4.649221e-01	k: 4551	n:10000
Cons ci ratio: 1.006498e-01	ci left: 1.250322e-01	ci right 1.383831e-01	k: 1316	n:10000
KS ci ratio: 1.435501e-02	ci left: 8.753109e-01	ci right 8.880658e-01	k: 8818	n:10000
PCDHB5   10000 perm   2 sec   (4673 perm/sec)   p_kst 8.818000e-01   p_cons 1.316000e-01   p_joint 4.551000e-01

Joint ci ratio: 3.842645e-02	ci left: 3.356230e-01	ci right 3.488229e-01	k: 6844	n:20000
Cons ci ratio: 7.107820e-02	ci left: 1.272883e-01	ci right 1.367189e-01	k: 2639	n:20000
KS ci ratio: 1.015186e-02	ci left: 8.771943e-01	ci right 8.861944e-01	k: 17635	n:20000
PCDHB5   20000 perm   5 sec   (4215 perm/sec)   p_kst 8.817500e-01   p_cons 1.319500e-01   p_joint 3.422000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB5.16_2392_20000_0.88175_0.13195_0.3422.png
                gene_name: PCDHB5
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 8 percent done.
PCDHA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.835916e-02	ci left: 6.469974e-01	ci right 6.657114e-01	k: 6564	n:10000
Cons ci ratio: 7.159900e-03	ci left: 9.641510e-01	ci right 9.711731e-01	k: 9678	n:10000
KS ci ratio: 4.204869e-02	ci left: 4.550858e-01	ci right 4.747347e-01	k: 4649	n:10000
PCDHA2   10000 perm   2 sec   (4871 perm/sec)   p_kst 4.649000e-01   p_cons 9.678000e-01   p_joint 6.564000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA2.15_2950_10000_0.4649_0.9678_0.6564.png
                gene_name: PCDHA2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 10 percent done.
PCDHB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.213559e-02	ci left: 9.068938e-01	ci right 9.180646e-01	k: 9126	n:10000
KS ci ratio: 9.608188e-03	ci left: 9.386903e-01	ci right 9.478494e-01	k: 9434	n:10000
PCDHB2   10000 perm   2 sec   (4954 perm/sec)   p_kst 9.434000e-01   p_cons 9.126000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHB2.15_2401_10000_0.9434_0.9126_1.png
                gene_name: PCDHB2
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
PCDHB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.418404e-02	ci left: 7.154271e-01	ci right 7.330421e-01	k: 7243	n:10000
Cons ci ratio: 3.299240e-02	ci left: 5.755702e-01	ci right 5.949801e-01	k: 5853	n:10000
KS ci ratio: 3.169081e-02	ci left: 5.950381e-01	ci right 6.143009e-01	k: 6047	n:10000
PCDHB3   10000 perm   2 sec   (4887 perm/sec)   p_kst 6.047000e-01   p_cons 5.853000e-01   p_joint 7.243000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB3.14_2395_10000_0.6047_0.5853_0.7243.png
                gene_name: PCDHB3
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 12 percent done.
PCDHGA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.235680e-02	ci left: 1.770385e-01	ci right 1.923456e-01	k: 1846	n:10000
Cons ci ratio: 2.848497e-02	ci left: 6.449852e-01	ci right 6.637248e-01	k: 6544	n:10000
KS ci ratio: 1.103187e-01	ci left: 1.058826e-01	ci right 1.183444e-01	k: 1120	n:10000
PCDHGA2   10000 perm   2 sec   (4481 perm/sec)   p_kst 1.120000e-01   p_cons 6.544000e-01   p_joint 1.846000e-01

Joint ci ratio: 6.339240e-02	ci left: 1.553880e-01	ci right 1.656109e-01	k: 3209	n:20000
Cons ci ratio: 2.039493e-02	ci left: 6.420880e-01	ci right 6.553687e-01	k: 12975	n:20000
KS ci ratio: 7.970010e-02	ci left: 1.035833e-01	ci right 1.122311e-01	k: 2157	n:20000
PCDHGA2   20000 perm   5 sec   (4086 perm/sec)   p_kst 1.078500e-01   p_cons 6.487500e-01   p_joint 1.604500e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA2.14_2863_20000_0.10785_0.64875_0.16045.png
                gene_name: PCDHGA2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 13 percent done.
PCDHA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.805205e-01	ci left: 8.505237e-03	ci right 1.258745e-02	k: 104	n:10000
Cons ci ratio: 1.548209e-02	ci left: 8.582481e-01	ci right 8.717385e-01	k: 8651	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
PCDHA10   10000 perm   2 sec   (4887 perm/sec)   p_kst 3.000000e-04   p_cons 8.651000e-01   p_joint 1.040000e-02

Joint ci ratio: 3.890588e-01	ci left: 4.069996e-03	ci right 6.078049e-03	k: 100	n:20000
Cons ci ratio: 1.093488e-02	ci left: 8.605411e-01	ci right 8.700524e-01	k: 17307	n:20000
KS ci ratio: 1.959755e+00	ci left: 3.093467e-05	ci right 4.383005e-04	k: 3	n:20000
PCDHA10   20000 perm   4 sec   (4467 perm/sec)   p_kst 1.500000e-04   p_cons 8.653500e-01   p_joint 5.000000e-03

Joint ci ratio: 3.648346e-01	ci left: 3.135523e-03	ci right 4.563214e-03	k: 114	n:30000
Cons ci ratio: 8.832689e-03	ci left: 8.639487e-01	ci right 8.716466e-01	k: 26035	n:30000
KS ci ratio: 1.959837e+00	ci left: 2.062288e-05	ci right 2.922143e-04	k: 3	n:30000
PCDHA10   30000 perm   7 sec   (4300 perm/sec)   p_kst 1.000000e-04   p_cons 8.678333e-01   p_joint 3.800000e-03

Joint ci ratio: 3.500628e-01	ci left: 2.579060e-03	ci right 3.695006e-03	k: 124	n:40000
Cons ci ratio: 7.611953e-03	ci left: 8.656037e-01	ci right 8.722426e-01	k: 34758	n:40000
KS ci ratio: 1.600193e+00	ci left: 4.058837e-05	ci right 2.916840e-04	k: 5	n:40000
PCDHA10   40000 perm   10 sec   (4184 perm/sec)   p_kst 1.250000e-04   p_cons 8.689500e-01   p_joint 3.100000e-03

Joint ci ratio: 3.273345e-01	ci left: 2.392621e-03	ci right 3.346552e-03	k: 142	n:50000
Cons ci ratio: 6.717422e-03	ci left: 8.690198e-01	ci right 8.748969e-01	k: 43599	n:50000
KS ci ratio: 1.306536e+00	ci left: 6.907909e-05	ci right 3.152393e-04	k: 8	n:50000
PCDHA10   50000 perm   12 sec   (4089 perm/sec)   p_kst 1.600000e-04   p_cons 8.719800e-01   p_joint 2.840000e-03

Joint ci ratio: 3.175484e-01	ci left: 2.131664e-03	ci right 2.950972e-03	k: 151	n:60000
Cons ci ratio: 6.115522e-03	ci left: 8.698890e-01	ci right 8.752416e-01	k: 52355	n:60000
KS ci ratio: 1.181806e+00	ci left: 7.992595e-05	ci right 3.064845e-04	k: 10	n:60000
PCDHA10   60000 perm   15 sec   (4012 perm/sec)   p_kst 1.666667e-04   p_cons 8.725833e-01   p_joint 2.516667e-03

Joint ci ratio: 3.176063e-01	ci left: 1.827092e-03	ci right 2.529483e-03	k: 151	n:70000
Cons ci ratio: 5.788044e-03	ci left: 8.650669e-01	ci right 8.701026e-01	k: 60732	n:70000
KS ci ratio: 1.131501e+00	ci left: 7.844767e-05	ci right 2.811545e-04	k: 11	n:70000
PCDHA10   70000 perm   18 sec   (3944 perm/sec)   p_kst 1.571429e-04   p_cons 8.676000e-01   p_joint 2.157143e-03

Joint ci ratio: 3.030200e-01	ci left: 1.771604e-03	ci right 2.415360e-03	k: 166	n:80000
Cons ci ratio: 5.428921e-03	ci left: 8.646022e-01	ci right 8.693212e-01	k: 69358	n:80000
KS ci ratio: 1.087117e+00	ci left: 7.750951e-05	ci right 2.620051e-04	k: 12	n:80000
PCDHA10   80000 perm   21 sec   (3882 perm/sec)   p_kst 1.500000e-04   p_cons 8.669750e-01   p_joint 2.075000e-03

Joint ci ratio: 3.219552e-01	ci left: 1.380140e-03	ci right 1.919465e-03	k: 147	n:90000
Cons ci ratio: 5.122060e-03	ci left: 8.645739e-01	ci right 8.690247e-01	k: 78013	n:90000
KS ci ratio: 1.087128e+00	ci left: 6.889712e-05	ci right 2.328949e-04	k: 12	n:90000
PCDHA10   90000 perm   24 sec   (3817 perm/sec)   p_kst 1.333333e-04   p_cons 8.668111e-01   p_joint 1.633333e-03

Joint ci ratio: 3.166691e-01	ci left: 1.288109e-03	ci right 1.781529e-03	k: 152	n:100000
Cons ci ratio: 4.852070e-03	ci left: 8.650307e-01	ci right 8.692480e-01	k: 86715	n:100000
KS ci ratio: 1.087136e+00	ci left: 6.200724e-05	ci right 2.096065e-04	k: 12	n:100000
PCDHA10   100000 perm   27 sec   (3759 perm/sec)   p_kst 1.200000e-04   p_cons 8.671500e-01   p_joint 1.520000e-03

Joint ci ratio: 3.198469e-01	ci left: 1.145899e-03	ci right 1.590151e-03	k: 149	n:110000
Cons ci ratio: 4.632008e-03	ci left: 8.648418e-01	ci right 8.688661e-01	k: 95355	n:110000
KS ci ratio: 1.047593e+00	ci left: 6.292829e-05	ci right 2.020860e-04	k: 13	n:110000
PCDHA10   110000 perm   30 sec   (3702 perm/sec)   p_kst 1.181818e-04   p_cons 8.668636e-01   p_joint 1.354545e-03

Joint ci ratio: 3.371887e-01	ci left: 9.356913e-04	ci right 1.322402e-03	k: 134	n:120000
Cons ci ratio: 4.645277e-03	ci left: 8.537913e-01	ci right 8.577749e-01	k: 102695	n:120000
KS ci ratio: 1.012072e+00	ci left: 6.378417e-05	ci right 1.957391e-04	k: 14	n:120000
PCDHA10   120000 perm   33 sec   (3644 perm/sec)   p_kst 1.166667e-04   p_cons 8.557917e-01   p_joint 1.116667e-03

Joint ci ratio: 3.276253e-01	ci left: 9.201174e-04	ci right 1.287336e-03	k: 142	n:130000
Cons ci ratio: 4.461353e-03	ci left: 8.539637e-01	ci right 8.577897e-01	k: 111265	n:130000
KS ci ratio: 9.238853e-01	ci left: 7.617968e-05	ci right 2.093660e-04	k: 17	n:130000
PCDHA10   130000 perm   36 sec   (3589 perm/sec)   p_kst 1.307692e-04   p_cons 8.558846e-01   p_joint 1.092308e-03

Joint ci ratio: 3.231452e-01	ci left: 8.806295e-04	ci right 1.226286e-03	k: 146	n:140000
Cons ci ratio: 4.293940e-03	ci left: 8.543295e-01	ci right 8.580129e-01	k: 119865	n:140000
KS ci ratio: 8.764729e-01	ci left: 8.171078e-05	ci right 2.119266e-04	k: 19	n:140000
PCDHA10   140000 perm   40 sec   (3535 perm/sec)   p_kst 1.357143e-04   p_cons 8.561786e-01   p_joint 1.042857e-03

Joint ci ratio: 3.177918e-01	ci left: 8.525711e-04	ci right 1.180543e-03	k: 151	n:150000
Cons ci ratio: 4.148650e-03	ci left: 8.543739e-01	ci right 8.579323e-01	k: 128424	n:150000
KS ci ratio: 8.356827e-01	ci left: 8.666423e-05	ci right 2.139970e-04	k: 21	n:150000
PCDHA10   150000 perm   43 sec   (3483 perm/sec)   p_kst 1.400000e-04   p_cons 8.561600e-01   p_joint 1.006667e-03

Joint ci ratio: 3.126956e-01	ci left: 8.280616e-04	ci right 1.140476e-03	k: 156	n:160000
Cons ci ratio: 4.022067e-03	ci left: 8.541131e-01	ci right 8.575615e-01	k: 136935	n:160000
KS ci ratio: 8.356867e-01	ci left: 8.124760e-05	ci right 2.006226e-04	k: 21	n:160000
PCDHA10   160000 perm   47 sec   (3433 perm/sec)   p_kst 1.312500e-04   p_cons 8.558438e-01   p_joint 9.750000e-04

Joint ci ratio: 3.022842e-01	ci left: 8.390678e-04	ci right 1.143070e-03	k: 167	n:170000
Cons ci ratio: 3.900622e-03	ci left: 8.542511e-01	ci right 8.575956e-01	k: 145508	n:170000
KS ci ratio: 8.356903e-01	ci left: 7.646823e-05	ci right 1.888217e-04	k: 21	n:170000
PCDHA10   170000 perm   50 sec   (3382 perm/sec)   p_kst 1.235294e-04   p_cons 8.559294e-01   p_joint 9.823529e-04

Joint ci ratio: 2.978880e-01	ci left: 8.181382e-04	ci right 1.109431e-03	k: 172	n:180000
Cons ci ratio: 3.784938e-03	ci left: 8.546766e-01	ci right 8.579231e-01	k: 154135	n:180000
KS ci ratio: 8.356934e-01	ci left: 7.221991e-05	ci right 1.783319e-04	k: 21	n:180000
PCDHA10   180000 perm   54 sec   (3336 perm/sec)   p_kst 1.166667e-04   p_cons 8.563056e-01   p_joint 9.555556e-04

Joint ci ratio: 2.970375e-01	ci left: 7.799464e-04	ci right 1.056699e-03	k: 173	n:190000
Cons ci ratio: 3.686118e-03	ci left: 8.545772e-01	ci right 8.577383e-01	k: 162671	n:190000
KS ci ratio: 8.001140e-01	ci left: 7.673848e-05	ci right 1.816329e-04	k: 23	n:190000
PCDHA10   190000 perm   58 sec   (3290 perm/sec)   p_kst 1.210526e-04   p_cons 8.561632e-01   p_joint 9.105263e-04

Joint ci ratio: 2.912387e-01	ci left: 7.733666e-04	ci right 1.041439e-03	k: 180	n:200000
Cons ci ratio: 3.594506e-03	ci left: 8.544989e-01	ci right 8.575808e-01	k: 171209	n:200000
KS ci ratio: 7.687234e-01	ci left: 8.089499e-05	ci right 1.845192e-04	k: 25	n:200000
PCDHA10   200000 perm   62 sec   (3216 perm/sec)   p_kst 1.250000e-04   p_cons 8.560450e-01   p_joint 9.000000e-04

Joint ci ratio: 2.904431e-01	ci left: 7.409522e-04	ci right 9.969584e-04	k: 181	n:210000
Cons ci ratio: 3.505671e-03	ci left: 8.546920e-01	ci right 8.576982e-01	k: 179802	n:210000
KS ci ratio: 7.543541e-01	ci left: 8.087804e-05	ci right 1.814044e-04	k: 26	n:210000
PCDHA10   210000 perm   66 sec   (3170 perm/sec)   p_kst 1.238095e-04   p_cons 8.562000e-01   p_joint 8.619048e-04

Joint ci ratio: 3.491205e-01	ci left: 4.729710e-04	ci right 6.769262e-04	k: 125	n:220000
Cons ci ratio: 3.426144e-03	ci left: 8.546492e-01	ci right 8.575869e-01	k: 188347	n:220000
KS ci ratio: 7.407615e-01	ci left: 8.087955e-05	ci right 1.785568e-04	k: 27	n:220000
PCDHA10   220000 perm   70 sec   (3136 perm/sec)   p_kst 1.227273e-04   p_cons 8.561227e-01   p_joint 5.681818e-04

Joint ci ratio: 3.548052e-01	ci left: 4.365516e-04	ci right 6.285746e-04	k: 121	n:230000
Cons ci ratio: 3.353862e-03	ci left: 8.544581e-01	ci right 8.573329e-01	k: 196857	n:230000
KS ci ratio: 7.407637e-01	ci left: 7.736299e-05	ci right 1.707936e-04	k: 27	n:230000
PCDHA10   230000 perm   75 sec   (3074 perm/sec)   p_kst 1.173913e-04   p_cons 8.559000e-01   p_joint 5.260870e-04

Joint ci ratio: 3.519347e-01	ci left: 4.259552e-04	ci right 6.114548e-04	k: 123	n:240000
Cons ci ratio: 3.284022e-03	ci left: 8.544300e-01	ci right 8.572447e-01	k: 205402	n:240000
KS ci ratio: 7.407656e-01	ci left: 7.413948e-05	ci right 1.636774e-04	k: 27	n:240000
PCDHA10   240000 perm   80 sec   (3012 perm/sec)   p_kst 1.125000e-04   p_cons 8.558417e-01   p_joint 5.125000e-04

Joint ci ratio: 3.463929e-01	ci left: 4.235138e-04	ci right 6.043945e-04	k: 127	n:250000
Cons ci ratio: 3.218058e-03	ci left: 8.544289e-01	ci right 8.571869e-01	k: 213953	n:250000
KS ci ratio: 7.407674e-01	ci left: 7.117385e-05	ci right 1.571305e-04	k: 27	n:250000
PCDHA10   250000 perm   84 sec   (2965 perm/sec)   p_kst 1.080000e-04   p_cons 8.558120e-01   p_joint 5.080000e-04

Joint ci ratio: 3.348193e-01	ci left: 4.388810e-04	ci right 6.187118e-04	k: 136	n:260000
Cons ci ratio: 3.154980e-03	ci left: 8.545017e-01	ci right 8.572057e-01	k: 222523	n:260000
KS ci ratio: 6.823398e-01	ci left: 8.418600e-05	ci right 1.737435e-04	k: 32	n:260000
PCDHA10   260000 perm   89 sec   (2936 perm/sec)   p_kst 1.230769e-04   p_cons 8.558577e-01   p_joint 5.230769e-04

Joint ci ratio: 2.979360e-01	ci left: 5.454135e-04	ci right 7.396398e-04	k: 172	n:270000
Cons ci ratio: 3.095333e-03	ci left: 8.545808e-01	ci right 8.572338e-01	k: 231096	n:270000
KS ci ratio: 6.625568e-01	ci left: 8.720889e-05	ci right 1.759645e-04	k: 34	n:270000
PCDHA10   270000 perm   93 sec   (2908 perm/sec)   p_kst 1.259259e-04   p_cons 8.559111e-01   p_joint 6.370370e-04

Joint ci ratio: 2.996778e-01	ci left: 5.193259e-04	ci right 7.055491e-04	k: 170	n:280000
Cons ci ratio: 3.039253e-03	ci left: 8.546296e-01	ci right 8.572345e-01	k: 239662	n:280000
KS ci ratio: 6.532902e-01	ci left: 8.706858e-05	ci right 1.738405e-04	k: 35	n:280000
PCDHA10   280000 perm   97 sec   (2883 perm/sec)   p_kst 1.250000e-04   p_cons 8.559357e-01   p_joint 6.071429e-04

Joint ci ratio: 3.069513e-01	ci left: 4.759291e-04	ci right 6.515436e-04	k: 162	n:290000
Cons ci ratio: 2.986782e-03	ci left: 8.546200e-01	ci right 8.571798e-01	k: 248212	n:290000
KS ci ratio: 6.358652e-01	ci left: 8.983400e-05	ci right 1.758565e-04	k: 37	n:290000
PCDHA10   290000 perm   102 sec   (2856 perm/sec)   p_kst 1.275862e-04   p_cons 8.559034e-01   p_joint 5.586207e-04

Joint ci ratio: 3.168319e-01	ci left: 4.293378e-04	ci right 5.938949e-04	k: 152	n:300000
Cons ci ratio: 2.936066e-03	ci left: 8.546850e-01	ci right 8.572014e-01	k: 256784	n:300000
KS ci ratio: 6.358666e-01	ci left: 8.683949e-05	ci right 1.699948e-04	k: 37	n:300000
PCDHA10   300000 perm   106 sec   (2827 perm/sec)   p_kst 1.233333e-04   p_cons 8.559467e-01   p_joint 5.066667e-04

Joint ci ratio: 1.934666e-01	ci left: 1.194646e-03	ci right 1.453531e-03	k: 409	n:310000
Cons ci ratio: 2.890114e-03	ci left: 8.545520e-01	ci right 8.570285e-01	k: 265296	n:310000
KS ci ratio: 6.121597e-01	ci left: 9.218409e-05	ci right 1.757012e-04	k: 40	n:310000
PCDHA10   310000 perm   111 sec   (2799 perm/sec)   p_kst 1.290323e-04   p_cons 8.557935e-01   p_joint 1.319355e-03

Joint ci ratio: 1.911506e-01	ci left: 1.187058e-03	ci right 1.440861e-03	k: 419	n:320000
Cons ci ratio: 2.843334e-03	ci left: 8.546816e-01	ci right 8.571182e-01	k: 273889	n:320000
KS ci ratio: 5.977533e-01	ci left: 9.459504e-05	ci right 1.774078e-04	k: 42	n:320000
PCDHA10   320000 perm   115 sec   (2771 perm/sec)   p_kst 1.312500e-04   p_cons 8.559031e-01   p_joint 1.309375e-03

Joint ci ratio: 1.904744e-01	ci left: 1.159742e-03	ci right 1.406726e-03	k: 422	n:330000
Cons ci ratio: 2.796620e-03	ci left: 8.549921e-01	ci right 8.573895e-01	k: 282544	n:330000
KS ci ratio: 5.977545e-01	ci left: 9.172848e-05	ci right 1.720319e-04	k: 42	n:330000
PCDHA10   330000 perm   120 sec   (2743 perm/sec)   p_kst 1.272727e-04   p_cons 8.561939e-01   p_joint 1.278788e-03

Joint ci ratio: 1.871839e-01	ci left: 1.167664e-03	ci right 1.411551e-03	k: 437	n:340000
Cons ci ratio: 2.755710e-03	ci left: 8.549629e-01	ci right 8.573251e-01	k: 291090	n:340000
KS ci ratio: 5.977557e-01	ci left: 8.903054e-05	ci right 1.669723e-04	k: 42	n:340000
PCDHA10   340000 perm   125 sec   (2713 perm/sec)   p_kst 1.235294e-04   p_cons 8.561471e-01   p_joint 1.285294e-03

Joint ci ratio: 1.857074e-01	ci left: 1.153368e-03	ci right 1.392155e-03	k: 444	n:350000
Cons ci ratio: 2.716167e-03	ci left: 8.549701e-01	ci right 8.572983e-01	k: 299648	n:350000
KS ci ratio: 5.977568e-01	ci left: 8.648677e-05	ci right 1.622017e-04	k: 42	n:350000
PCDHA10   350000 perm   130 sec   (2686 perm/sec)   p_kst 1.200000e-04   p_cons 8.561371e-01   p_joint 1.268571e-03

Joint ci ratio: 1.867642e-01	ci left: 1.108086e-03	ci right 1.338951e-03	k: 439	n:360000
Cons ci ratio: 2.678037e-03	ci left: 8.549994e-01	ci right 8.572949e-01	k: 308214	n:360000
KS ci ratio: 5.977579e-01	ci left: 8.408432e-05	ci right 1.576962e-04	k: 42	n:360000
PCDHA10   360000 perm   135 sec   (2659 perm/sec)   p_kst 1.166667e-04   p_cons 8.561500e-01   p_joint 1.219444e-03

Joint ci ratio: 1.989032e-01	ci left: 9.443675e-04	ci right 1.155464e-03	k: 387	n:370000
Cons ci ratio: 2.641613e-03	ci left: 8.550137e-01	ci right 8.572780e-01	k: 316775	n:370000
KS ci ratio: 5.909263e-01	ci left: 8.410749e-05	ci right 1.565393e-04	k: 43	n:370000
PCDHA10   370000 perm   140 sec   (2634 perm/sec)   p_kst 1.162162e-04   p_cons 8.561486e-01   p_joint 1.045946e-03

Joint ci ratio: 1.956519e-01	ci left: 9.520369e-04	ci right 1.160955e-03	k: 400	n:380000
Cons ci ratio: 2.606581e-03	ci left: 8.550328e-01	ci right 8.572670e-01	k: 325338	n:380000
KS ci ratio: 5.909272e-01	ci left: 8.189410e-05	ci right 1.524199e-04	k: 43	n:380000
PCDHA10   380000 perm   146 sec   (2607 perm/sec)   p_kst 1.131579e-04   p_cons 8.561526e-01   p_joint 1.052632e-03

Joint ci ratio: 1.925550e-01	ci left: 9.593396e-04	ci right 1.166137e-03	k: 413	n:390000
Cons ci ratio: 2.574299e-03	ci left: 8.549173e-01	ci right 8.571235e-01	k: 333849	n:390000
KS ci ratio: 5.843246e-01	ci left: 8.197672e-05	ci right 1.514533e-04	k: 44	n:390000
PCDHA10   390000 perm   151 sec   (2578 perm/sec)   p_kst 1.128205e-04   p_cons 8.560231e-01   p_joint 1.058974e-03

Joint ci ratio: 1.932597e-01	ci left: 9.282169e-04	ci right 1.129124e-03	k: 410	n:400000
Cons ci ratio: 2.541897e-03	ci left: 8.549332e-01	ci right 8.571116e-01	k: 342410	n:400000
KS ci ratio: 5.779385e-01	ci left: 8.205942e-05	ci right 1.505310e-04	k: 45	n:400000
PCDHA10   400000 perm   157 sec   (2553 perm/sec)   p_kst 1.125000e-04   p_cons 8.560250e-01   p_joint 1.025000e-03

Joint ci ratio: 1.914064e-01	ci left: 9.241499e-04	ci right 1.122035e-03	k: 418	n:410000
Cons ci ratio: 2.511508e-03	ci left: 8.548678e-01	ci right 8.570199e-01	k: 350938	n:410000
KS ci ratio: 5.717573e-01	ci left: 8.214206e-05	ci right 1.496498e-04	k: 46	n:410000
PCDHA10   410000 perm   162 sec   (2528 perm/sec)   p_kst 1.121951e-04   p_cons 8.559463e-01   p_joint 1.019512e-03

Joint ci ratio: 1.893836e-01	ci left: 9.225534e-04	ci right 1.117769e-03	k: 427	n:420000
Cons ci ratio: 2.481415e-03	ci left: 8.548820e-01	ci right 8.570083e-01	k: 359498	n:420000
KS ci ratio: 5.543381e-01	ci left: 8.631185e-05	ci right 1.542366e-04	k: 49	n:420000
PCDHA10   420000 perm   168 sec   (2505 perm/sec)   p_kst 1.166667e-04   p_cons 8.559476e-01   p_joint 1.016667e-03

Joint ci ratio: 1.869956e-01	ci left: 9.254751e-04	ci right 1.118559e-03	k: 438	n:430000
Cons ci ratio: 2.451316e-03	ci left: 8.550030e-01	ci right 8.571038e-01	k: 368104	n:430000
KS ci ratio: 5.543388e-01	ci left: 8.430457e-05	ci right 1.506498e-04	k: 49	n:430000
PCDHA10   430000 perm   173 sec   (2482 perm/sec)   p_kst 1.139535e-04   p_cons 8.560558e-01   p_joint 1.018605e-03

Joint ci ratio: 1.909575e-01	ci left: 8.654650e-04	ci right 1.050299e-03	k: 420	n:440000
Cons ci ratio: 2.423066e-03	ci left: 8.550389e-01	ci right 8.571155e-01	k: 376675	n:440000
KS ci ratio: 5.488774e-01	ci left: 8.434424e-05	ci right 1.498127e-04	k: 50	n:440000
PCDHA10   440000 perm   179 sec   (2459 perm/sec)   p_kst 1.136364e-04   p_cons 8.560795e-01   p_joint 9.545455e-04

Joint ci ratio: 1.885103e-01	ci left: 8.695160e-04	ci right 1.052563e-03	k: 431	n:450000
Cons ci ratio: 2.396096e-03	ci left: 8.550399e-01	ci right 8.570933e-01	k: 385231	n:450000
KS ci ratio: 5.488781e-01	ci left: 8.246990e-05	ci right 1.464836e-04	k: 50	n:450000
PCDHA10   450000 perm   185 sec   (2435 perm/sec)   p_kst 1.111111e-04   p_cons 8.560689e-01   p_joint 9.577778e-04

Joint ci ratio: 1.928038e-01	ci left: 8.112780e-04	ci right 9.864111e-04	k: 412	n:460000
Cons ci ratio: 2.369253e-03	ci left: 8.551194e-01	ci right 8.571500e-01	k: 393823	n:460000
KS ci ratio: 5.435749e-01	ci left: 8.255075e-05	ci right 1.457705e-04	k: 51	n:460000
PCDHA10   460000 perm   191 sec   (2413 perm/sec)   p_kst 1.108696e-04   p_cons 8.561370e-01   p_joint 8.956522e-04

Joint ci ratio: 1.918778e-01	ci left: 8.021172e-04	ci right 9.743441e-04	k: 416	n:470000
Cons ci ratio: 2.344224e-03	ci left: 8.550976e-01	ci right 8.571066e-01	k: 402369	n:470000
KS ci ratio: 5.384225e-01	ci left: 8.263104e-05	ci right 1.450849e-04	k: 52	n:470000
PCDHA10   470000 perm   196 sec   (2392 perm/sec)   p_kst 1.106383e-04   p_cons 8.561043e-01   p_joint 8.851064e-04

Joint ci ratio: 2.045439e-01	ci left: 6.863996e-04	ci right 8.447267e-04	k: 366	n:480000
Cons ci ratio: 2.319912e-03	ci left: 8.550830e-01	ci right 8.570711e-01	k: 410918	n:480000
KS ci ratio: 5.334139e-01	ci left: 8.271072e-05	ci right 1.444253e-04	k: 53	n:480000
PCDHA10   480000 perm   202 sec   (2372 perm/sec)   p_kst 1.104167e-04   p_cons 8.560792e-01   p_joint 7.625000e-04

Joint ci ratio: 2.026208e-01	ci left: 6.859490e-04	ci right 8.425004e-04	k: 373	n:490000
Cons ci ratio: 2.295239e-03	ci left: 8.551878e-01	ci right 8.571549e-01	k: 419525	n:490000
KS ci ratio: 5.334145e-01	ci left: 8.102272e-05	ci right 1.414779e-04	k: 53	n:490000
PCDHA10   490000 perm   208 sec   (2352 perm/sec)   p_kst 1.081633e-04   p_cons 8.561735e-01   p_joint 7.612245e-04

Joint ci ratio: 2.023518e-01	ci left: 6.741282e-04	ci right 8.277522e-04	k: 374	n:500000
Cons ci ratio: 2.272405e-03	ci left: 8.551722e-01	ci right 8.571197e-01	k: 428074	n:500000
KS ci ratio: 5.238022e-01	ci left: 8.286810e-05	ci right 1.431777e-04	k: 55	n:500000
PCDHA10   500000 perm   214 sec   (2331 perm/sec)   p_kst 1.100000e-04   p_cons 8.561480e-01   p_joint 7.480000e-04

Joint ci ratio: 2.010166e-01	ci left: 6.702186e-04	ci right 8.218204e-04	k: 379	n:510000
Cons ci ratio: 2.250401e-03	ci left: 8.551396e-01	ci right 8.570681e-01	k: 436614	n:510000
KS ci ratio: 5.238028e-01	ci left: 8.124321e-05	ci right 1.403704e-04	k: 55	n:510000
PCDHA10   510000 perm   221 sec   (2312 perm/sec)   p_kst 1.078431e-04   p_cons 8.561059e-01   p_joint 7.431373e-04

Joint ci ratio: 1.997075e-01	ci left: 6.664627e-04	ci right 8.161135e-04	k: 384	n:520000
Cons ci ratio: 2.228624e-03	ci left: 8.551527e-01	ci right 8.570625e-01	k: 445177	n:520000
KS ci ratio: 5.191877e-01	ci left: 8.135061e-05	ci right 1.398452e-04	k: 56	n:520000
PCDHA10   520000 perm   227 sec   (2293 perm/sec)   p_kst 1.076923e-04   p_cons 8.561096e-01   p_joint 7.384615e-04

Joint ci ratio: 2.020867e-01	ci left: 6.377600e-04	ci right 7.828822e-04	k: 375	n:530000
Cons ci ratio: 2.207382e-03	ci left: 8.551749e-01	ci right 8.570665e-01	k: 453745	n:530000
KS ci ratio: 5.191883e-01	ci left: 7.981567e-05	ci right 1.372066e-04	k: 56	n:530000
PCDHA10   530000 perm   233 sec   (2273 perm/sec)   p_kst 1.056604e-04   p_cons 8.561226e-01   p_joint 7.075472e-04

Joint ci ratio: 1.989362e-01	ci left: 6.470565e-04	ci right 7.917204e-04	k: 387	n:540000
Cons ci ratio: 2.186556e-03	ci left: 8.552167e-01	ci right 8.570906e-01	k: 462324	n:540000
KS ci ratio: 5.146931e-01	ci left: 7.994770e-05	ci right 1.367573e-04	k: 57	n:540000
PCDHA10   540000 perm   240 sec   (2254 perm/sec)   p_kst 1.055556e-04   p_cons 8.561556e-01   p_joint 7.166667e-04

Joint ci ratio: 1.974158e-01	ci left: 6.456596e-04	ci right 7.887752e-04	k: 393	n:550000
Cons ci ratio: 2.166467e-03	ci left: 8.552389e-01	ci right 8.570955e-01	k: 470893	n:550000
KS ci ratio: 5.103127e-01	ci left: 8.007700e-05	ci right 1.363223e-04	k: 58	n:550000
PCDHA10   550000 perm   246 sec   (2236 perm/sec)   p_kst 1.054545e-04   p_cons 8.561691e-01   p_joint 7.145455e-04

Joint ci ratio: 1.961754e-01	ci left: 6.426185e-04	ci right 7.840581e-04	k: 398	n:560000
Cons ci ratio: 2.147546e-03	ci left: 8.551887e-01	ci right 8.570290e-01	k: 479422	n:560000
KS ci ratio: 5.060423e-01	ci left: 8.020368e-05	ci right 1.359010e-04	k: 59	n:560000
PCDHA10   560000 perm   253 sec   (2217 perm/sec)   p_kst 1.053571e-04   p_cons 8.561107e-01   p_joint 7.107143e-04

Joint ci ratio: 1.942376e-01	ci left: 6.446937e-04	ci right 7.850227e-04	k: 406	n:570000
Cons ci ratio: 2.128898e-03	ci left: 8.551650e-01	ci right 8.569892e-01	k: 487965	n:570000
KS ci ratio: 5.060427e-01	ci left: 7.879658e-05	ci right 1.335168e-04	k: 59	n:570000
PCDHA10   570000 perm   259 sec   (2199 perm/sec)   p_kst 1.035088e-04   p_cons 8.560789e-01   p_joint 7.122807e-04

Joint ci ratio: 1.928217e-01	ci left: 6.434219e-04	ci right 7.823334e-04	k: 412	n:580000
Cons ci ratio: 2.110182e-03	ci left: 8.552062e-01	ci right 8.570144e-01	k: 496545	n:580000
KS ci ratio: 5.018777e-01	ci left: 7.894283e-05	ci right 1.331565e-04	k: 60	n:580000
PCDHA10   580000 perm   266 sec   (2181 perm/sec)   p_kst 1.034483e-04   p_cons 8.561121e-01   p_joint 7.103448e-04

Joint ci ratio: 1.907542e-01	ci left: 6.470384e-04	ci right 7.850591e-04	k: 421	n:590000
Cons ci ratio: 2.092181e-03	ci left: 8.552188e-01	ci right 8.570116e-01	k: 505109	n:590000
KS ci ratio: 4.938468e-01	ci left: 8.056879e-05	ci right 1.347119e-04	k: 62	n:590000
PCDHA10   590000 perm   273 sec   (2164 perm/sec)   p_kst 1.050847e-04   p_cons 8.561169e-01   p_joint 7.135593e-04

Joint ci ratio: 1.894126e-01	ci left: 6.457785e-04	ci right 7.824502e-04	k: 427	n:600000
Cons ci ratio: 2.074648e-03	ci left: 8.552294e-01	ci right 8.570072e-01	k: 513672	n:600000
KS ci ratio: 4.899735e-01	ci left: 8.068580e-05	ci right 1.343386e-04	k: 63	n:600000
PCDHA10   600000 perm   279 sec   (2147 perm/sec)   p_kst 1.050000e-04   p_cons 8.561200e-01   p_joint 7.116667e-04

Joint ci ratio: 1.878824e-01	ci left: 6.461255e-04	ci right 7.816398e-04	k: 434	n:610000
Cons ci ratio: 2.057315e-03	ci left: 8.552676e-01	ci right 8.570306e-01	k: 522252	n:610000
KS ci ratio: 4.899739e-01	ci left: 7.936306e-05	ci right 1.321364e-04	k: 63	n:610000
PCDHA10   610000 perm   286 sec   (2130 perm/sec)   p_kst 1.032787e-04   p_cons 8.561508e-01   p_joint 7.114754e-04

Joint ci ratio: 1.883172e-01	ci left: 6.326298e-04	ci right 7.656558e-04	k: 432	n:620000
Cons ci ratio: 2.041331e-03	ci left: 8.551931e-01	ci right 8.569422e-01	k: 530763	n:620000
KS ci ratio: 4.861903e-01	ci left: 7.949733e-05	ci right 1.318152e-04	k: 64	n:620000
PCDHA10   620000 perm   293 sec   (2113 perm/sec)   p_kst 1.032258e-04   p_cons 8.560694e-01   p_joint 6.967742e-04

Joint ci ratio: 1.870260e-01	ci left: 6.316644e-04	ci right 7.634733e-04	k: 438	n:630000
Cons ci ratio: 2.024252e-03	ci left: 8.552993e-01	ci right 8.570339e-01	k: 539386	n:630000
KS ci ratio: 4.753438e-01	ci left: 8.242009e-05	ci right 1.350578e-04	k: 67	n:630000
PCDHA10   630000 perm   300 sec   (2097 perm/sec)   p_kst 1.063492e-04   p_cons 8.561683e-01   p_joint 6.952381e-04

Joint ci ratio: 1.883193e-01	ci left: 6.128595e-04	ci right 7.417298e-04	k: 432	n:640000
Cons ci ratio: 2.008397e-03	ci left: 8.553035e-01	ci right 8.570245e-01	k: 547946	n:640000
KS ci ratio: 4.718867e-01	ci left: 8.250820e-05	ci right 1.346953e-04	k: 68	n:640000
PCDHA10   640000 perm   308 sec   (2081 perm/sec)   p_kst 1.062500e-04   p_cons 8.561656e-01   p_joint 6.750000e-04

Joint ci ratio: 1.866032e-01	ci left: 6.151611e-04	ci right 7.432031e-04	k: 440	n:650000
Cons ci ratio: 1.993207e-03	ci left: 8.552706e-01	ci right 8.569785e-01	k: 556482	n:650000
KS ci ratio: 4.718871e-01	ci left: 8.123883e-05	ci right 1.326231e-04	k: 68	n:650000
PCDHA10   650000 perm   315 sec   (2066 perm/sec)   p_kst 1.046154e-04   p_cons 8.561262e-01   p_joint 6.769231e-04

Joint ci ratio: 1.861822e-01	ci left: 6.087292e-04	ci right 7.351143e-04	k: 442	n:660000
Cons ci ratio: 1.978052e-03	ci left: 8.552767e-01	ci right 8.569717e-01	k: 565043	n:660000
KS ci ratio: 4.685044e-01	ci left: 8.134349e-05	ci right 1.323071e-04	k: 69	n:660000
PCDHA10   660000 perm   322 sec   (2050 perm/sec)   p_kst 1.045455e-04   p_cons 8.561258e-01   p_joint 6.696970e-04

Joint ci ratio: 1.851405e-01	ci left: 6.067594e-04	ci right 7.319516e-04	k: 447	n:670000
Cons ci ratio: 1.963666e-03	ci left: 8.552289e-01	ci right 8.569113e-01	k: 573568	n:670000
KS ci ratio: 4.651934e-01	ci left: 8.144630e-05	ci right 1.319994e-04	k: 70	n:670000
PCDHA10   670000 perm   329 sec   (2035 perm/sec)   p_kst 1.044776e-04   p_cons 8.560716e-01   p_joint 6.671642e-04

Joint ci ratio: 1.855564e-01	ci left: 5.950314e-04	ci right 7.181106e-04	k: 445	n:680000
Cons ci ratio: 1.948845e-03	ci left: 8.552768e-01	ci right 8.569467e-01	k: 582157	n:680000
KS ci ratio: 4.651938e-01	ci left: 8.024855e-05	ci right 1.300582e-04	k: 70	n:680000
PCDHA10   680000 perm   337 sec   (2020 perm/sec)   p_kst 1.029412e-04   p_cons 8.561132e-01   p_joint 6.544118e-04

Joint ci ratio: 1.969307e-01	ci left: 5.174082e-04	ci right 6.317800e-04	k: 395	n:690000
Cons ci ratio: 1.934684e-03	ci left: 8.552812e-01	ci right 8.569390e-01	k: 590717	n:690000
KS ci ratio: 4.556660e-01	ci left: 8.292893e-05	ci right 1.330222e-04	k: 73	n:690000
PCDHA10   690000 perm   344 sec   (2005 perm/sec)   p_kst 1.057971e-04   p_cons 8.561116e-01   p_joint 5.724638e-04

Joint ci ratio: 1.959439e-01	ci left: 5.154499e-04	ci right 6.287496e-04	k: 399	n:700000
Cons ci ratio: 1.920516e-03	ci left: 8.553257e-01	ci right 8.569713e-01	k: 599305	n:700000
KS ci ratio: 4.526180e-01	ci left: 8.300933e-05	ci right 1.327128e-04	k: 74	n:700000
PCDHA10   700000 perm   352 sec   (1990 perm/sec)   p_kst 1.057143e-04   p_cons 8.561500e-01   p_joint 5.700000e-04

Joint ci ratio: 1.954563e-01	ci left: 5.108688e-04	ci right 6.228489e-04	k: 401	n:710000
Cons ci ratio: 1.907603e-03	ci left: 8.552461e-01	ci right 8.568805e-01	k: 607806	n:710000
KS ci ratio: 4.496305e-01	ci left: 8.308857e-05	ci right 1.324111e-04	k: 75	n:710000
PCDHA10   710000 perm   359 sec   (1976 perm/sec)   p_kst 1.056338e-04   p_cons 8.560648e-01   p_joint 5.647887e-04

Joint ci ratio: 1.944913e-01	ci left: 5.090577e-04	ci right 6.200247e-04	k: 405	n:720000
Cons ci ratio: 1.894273e-03	ci left: 8.552565e-01	ci right 8.568795e-01	k: 616370	n:720000
KS ci ratio: 4.467013e-01	ci left: 8.316665e-05	ci right 1.321168e-04	k: 76	n:720000
PCDHA10   720000 perm   368 sec   (1959 perm/sec)   p_kst 1.055556e-04   p_cons 8.560694e-01   p_joint 5.625000e-04

Joint ci ratio: 1.944921e-01	ci left: 5.020841e-04	ci right 6.115315e-04	k: 405	n:730000
Cons ci ratio: 1.880791e-03	ci left: 8.553230e-01	ci right 8.569345e-01	k: 624975	n:730000
KS ci ratio: 4.467016e-01	ci left: 8.202736e-05	ci right 1.303070e-04	k: 76	n:730000
PCDHA10   730000 perm   375 sec   (1944 perm/sec)   p_kst 1.041096e-04   p_cons 8.561301e-01   p_joint 5.547945e-04

Joint ci ratio: 1.930706e-01	ci left: 5.030140e-04	ci right 6.117685e-04	k: 411	n:740000
Cons ci ratio: 1.867868e-03	ci left: 8.553511e-01	ci right 8.569516e-01	k: 633553	n:740000
KS ci ratio: 4.410106e-01	ci left: 8.331946e-05	ci right 1.315490e-04	k: 78	n:740000
PCDHA10   740000 perm   383 sec   (1930 perm/sec)   p_kst 1.054054e-04   p_cons 8.561527e-01   p_joint 5.554054e-04

Joint ci ratio: 1.933062e-01	ci left: 4.950381e-04	ci right 6.022141e-04	k: 410	n:750000
Cons ci ratio: 1.855630e-03	ci left: 8.553223e-01	ci right 8.569123e-01	k: 642089	n:750000
KS ci ratio: 4.328676e-01	ci left: 8.576849e-05	ci right 1.342324e-04	k: 81	n:750000
PCDHA10   750000 perm   391 sec   (1916 perm/sec)   p_kst 1.080000e-04   p_cons 8.561187e-01   p_joint 5.466667e-04

Joint ci ratio: 1.923726e-01	ci left: 4.935335e-04	ci right 5.998072e-04	k: 414	n:760000
Cons ci ratio: 1.843138e-03	ci left: 8.553603e-01	ci right 8.569396e-01	k: 650675	n:760000
KS ci ratio: 4.302521e-01	ci left: 8.581278e-05	ci right 1.339241e-04	k: 82	n:760000
PCDHA10   760000 perm   400 sec   (1902 perm/sec)   p_kst 1.078947e-04   p_cons 8.561513e-01   p_joint 5.447368e-04

Joint ci ratio: 1.916813e-01	ci left: 4.908327e-04	ci right 5.961008e-04	k: 417	n:770000
Cons ci ratio: 1.830691e-03	ci left: 8.554247e-01	ci right 8.569934e-01	k: 659282	n:770000
KS ci ratio: 4.226806e-01	ci left: 8.817622e-05	ci right 1.364967e-04	k: 85	n:770000
PCDHA10   770000 perm   407 sec   (1890 perm/sec)   p_kst 1.103896e-04   p_cons 8.562104e-01   p_joint 5.415584e-04

Joint ci ratio: 1.903202e-01	ci left: 4.918645e-04	ci right 5.965181e-04	k: 423	n:780000
Cons ci ratio: 1.818379e-03	ci left: 8.555029e-01	ci right 8.570612e-01	k: 667901	n:780000
KS ci ratio: 4.226809e-01	ci left: 8.704575e-05	ci right 1.347467e-04	k: 85	n:780000
PCDHA10   780000 perm   415 sec   (1878 perm/sec)   p_kst 1.089744e-04   p_cons 8.562833e-01   p_joint 5.423077e-04

Joint ci ratio: 1.921431e-01	ci left: 4.759962e-04	ci right 5.783570e-04	k: 415	n:790000
Cons ci ratio: 1.806562e-03	ci left: 8.555448e-01	ci right 8.570931e-01	k: 676493	n:790000
KS ci ratio: 4.226812e-01	ci left: 8.594389e-05	ci right 1.330411e-04	k: 85	n:790000
PCDHA10   790000 perm   423 sec   (1865 perm/sec)   p_kst 1.075949e-04   p_cons 8.563203e-01   p_joint 5.253165e-04

Joint ci ratio: 1.935453e-01	ci left: 4.629080e-04	ci right 5.632663e-04	k: 409	n:800000
Cons ci ratio: 1.795694e-03	ci left: 8.554868e-01	ci right 8.570256e-01	k: 685006	n:800000
KS ci ratio: 4.202450e-01	ci left: 8.598700e-05	ci right 1.327599e-04	k: 86	n:800000
PCDHA10   800000 perm   432 sec   (1853 perm/sec)   p_kst 1.075000e-04   p_cons 8.562575e-01   p_joint 5.112500e-04

Joint ci ratio: 1.928413e-01	ci left: 4.607176e-04	ci right 5.601951e-04	k: 412	n:810000
Cons ci ratio: 1.784454e-03	ci left: 8.555082e-01	ci right 8.570374e-01	k: 693582	n:810000
KS ci ratio: 4.178504e-01	ci left: 8.602980e-05	ci right 1.324850e-04	k: 87	n:810000
PCDHA10   810000 perm   440 sec   (1839 perm/sec)   p_kst 1.074074e-04   p_cons 8.562741e-01   p_joint 5.086420e-04

Joint ci ratio: 1.947381e-01	ci left: 4.458160e-04	ci right 5.431350e-04	k: 404	n:820000
Cons ci ratio: 1.773951e-03	ci left: 8.554558e-01	ci right 8.569759e-01	k: 702098	n:820000
KS ci ratio: 4.178507e-01	ci left: 8.498064e-05	ci right 1.308693e-04	k: 87	n:820000
PCDHA10   820000 perm   449 sec   (1827 perm/sec)   p_kst 1.060976e-04   p_cons 8.562171e-01   p_joint 4.926829e-04

Joint ci ratio: 1.928425e-01	ci left: 4.496157e-04	ci right 5.466967e-04	k: 412	n:830000
Cons ci ratio: 1.763674e-03	ci left: 8.553986e-01	ci right 8.569098e-01	k: 710609	n:830000
KS ci ratio: 4.086654e-01	ci left: 8.827501e-05	ci right 1.346102e-04	k: 91	n:830000
PCDHA10   830000 perm   457 sec   (1815 perm/sec)   p_kst 1.096386e-04   p_cons 8.561554e-01   p_joint 4.963855e-04

Joint ci ratio: 1.919155e-01	ci left: 4.487957e-04	ci right 5.451794e-04	k: 416	n:840000
Cons ci ratio: 1.753259e-03	ci left: 8.553870e-01	ci right 8.568892e-01	k: 719157	n:840000
KS ci ratio: 4.064623e-01	ci left: 8.829253e-05	ci right 1.343196e-04	k: 92	n:840000
PCDHA10   840000 perm   466 sec   (1803 perm/sec)   p_kst 1.095238e-04   p_cons 8.561393e-01   p_joint 4.952381e-04

Joint ci ratio: 1.944998e-01	ci left: 4.312001e-04	ci right 5.251997e-04	k: 405	n:850000
Cons ci ratio: 1.742960e-03	ci left: 8.553851e-01	ci right 8.568784e-01	k: 727713	n:850000
KS ci ratio: 4.064626e-01	ci left: 8.725379e-05	ci right 1.327394e-04	k: 92	n:850000
PCDHA10   850000 perm   475 sec   (1791 perm/sec)   p_kst 1.082353e-04   p_cons 8.561329e-01   p_joint 4.764706e-04

Joint ci ratio: 1.947404e-01	ci left: 4.250799e-04	ci right 5.178735e-04	k: 404	n:860000
Cons ci ratio: 1.732881e-03	ci left: 8.553774e-01	ci right 8.568621e-01	k: 736264	n:860000
KS ci ratio: 4.064628e-01	ci left: 8.623920e-05	ci right 1.311959e-04	k: 92	n:860000
PCDHA10   860000 perm   483 sec   (1779 perm/sec)   p_kst 1.069767e-04   p_cons 8.561209e-01   p_joint 4.697674e-04

Joint ci ratio: 1.942616e-01	ci left: 4.223808e-04	ci right 5.143317e-04	k: 406	n:870000
Cons ci ratio: 1.722943e-03	ci left: 8.553745e-01	ci right 8.568507e-01	k: 744819	n:870000
KS ci ratio: 4.064631e-01	ci left: 8.524793e-05	ci right 1.296879e-04	k: 92	n:870000
PCDHA10   870000 perm   492 sec   (1767 perm/sec)   p_kst 1.057471e-04   p_cons 8.561138e-01   p_joint 4.666667e-04

Joint ci ratio: 1.930792e-01	ci left: 4.229873e-04	ci right 5.144440e-04	k: 411	n:880000
Cons ci ratio: 1.712866e-03	ci left: 8.554162e-01	ci right 8.568838e-01	k: 753413	n:880000
KS ci ratio: 4.042953e-01	ci left: 8.529969e-05	ci right 1.294658e-04	k: 93	n:880000
PCDHA10   880000 perm   501 sec   (1756 perm/sec)   p_kst 1.056818e-04   p_cons 8.561511e-01   p_joint 4.670455e-04

Joint ci ratio: 1.923803e-01	ci left: 4.214428e-04	ci right 5.121970e-04	k: 414	n:890000
Cons ci ratio: 1.703034e-03	ci left: 8.554468e-01	ci right 8.569060e-01	k: 761998	n:890000
KS ci ratio: 4.000615e-01	ci left: 8.636114e-05	ci right 1.304845e-04	k: 95	n:890000
PCDHA10   890000 perm   510 sec   (1744 perm/sec)   p_kst 1.067416e-04   p_cons 8.561775e-01   p_joint 4.651685e-04

Joint ci ratio: 1.962018e-01	ci left: 3.998465e-04	ci right 4.878651e-04	k: 398	n:900000
Cons ci ratio: 1.693483e-03	ci left: 8.554600e-01	ci right 8.569110e-01	k: 770568	n:900000
KS ci ratio: 3.979940e-01	ci left: 8.640117e-05	ci right 1.302567e-04	k: 96	n:900000
PCDHA10   900000 perm   519 sec   (1733 perm/sec)   p_kst 1.066667e-04   p_cons 8.561867e-01   p_joint 4.422222e-04

Joint ci ratio: 1.959568e-01	ci left: 3.964975e-04	ci right 4.836568e-04	k: 399	n:910000
Cons ci ratio: 1.684407e-03	ci left: 8.554267e-01	ci right 8.568699e-01	k: 779096	n:910000
KS ci ratio: 3.979943e-01	ci left: 8.545170e-05	ci right 1.288253e-04	k: 96	n:910000
PCDHA10   910000 perm   528 sec   (1722 perm/sec)   p_kst 1.054945e-04   p_cons 8.561495e-01   p_joint 4.384615e-04

Joint ci ratio: 1.952262e-01	ci left: 3.952889e-04	ci right 4.818201e-04	k: 402	n:920000
Cons ci ratio: 1.675046e-03	ci left: 8.554574e-01	ci right 8.568926e-01	k: 787682	n:920000
KS ci ratio: 3.979945e-01	ci left: 8.452287e-05	ci right 1.274251e-04	k: 96	n:920000
PCDHA10   920000 perm   538 sec   (1711 perm/sec)   p_kst 1.043478e-04   p_cons 8.561761e-01   p_joint 4.369565e-04

Joint ci ratio: 1.952267e-01	ci left: 3.910384e-04	ci right 4.766393e-04	k: 402	n:930000
Cons ci ratio: 1.666233e-03	ci left: 8.554292e-01	ci right 8.568568e-01	k: 796214	n:930000
KS ci ratio: 3.979947e-01	ci left: 8.361401e-05	ci right 1.260549e-04	k: 96	n:930000
PCDHA10   930000 perm   547 sec   (1700 perm/sec)   p_kst 1.032258e-04   p_cons 8.561441e-01   p_joint 4.322581e-04

Joint ci ratio: 1.949853e-01	ci left: 3.878902e-04	ci right 4.726845e-04	k: 403	n:940000
Cons ci ratio: 1.657321e-03	ci left: 8.554368e-01	ci right 8.568567e-01	k: 804779	n:940000
KS ci ratio: 3.959589e-01	ci left: 8.368212e-05	ci right 1.258834e-04	k: 97	n:940000
PCDHA10   940000 perm   557 sec   (1689 perm/sec)   p_kst 1.031915e-04   p_cons 8.561479e-01   p_joint 4.287234e-04

Joint ci ratio: 1.933174e-01	ci left: 3.908175e-04	ci right 4.754350e-04	k: 410	n:950000
Cons ci ratio: 1.648775e-03	ci left: 8.554105e-01	ci right 8.568231e-01	k: 813312	n:950000
KS ci ratio: 3.939541e-01	ci left: 8.374933e-05	ci right 1.257150e-04	k: 98	n:950000
PCDHA10   950000 perm   566 sec   (1678 perm/sec)   p_kst 1.031579e-04   p_cons 8.561179e-01   p_joint 4.315789e-04

Joint ci ratio: 1.923835e-01	ci left: 3.907120e-04	ci right 4.748501e-04	k: 414	n:960000
Cons ci ratio: 1.640063e-03	ci left: 8.554297e-01	ci right 8.568348e-01	k: 821888	n:960000
KS ci ratio: 3.919794e-01	ci left: 8.381568e-05	ci right 1.255496e-04	k: 99	n:960000
PCDHA10   960000 perm   576 sec   (1667 perm/sec)   p_kst 1.031250e-04   p_cons 8.561333e-01   p_joint 4.312500e-04

Joint ci ratio: 1.916921e-01	ci left: 3.896281e-04	ci right 4.731961e-04	k: 417	n:970000
Cons ci ratio: 1.631664e-03	ci left: 8.554216e-01	ci right 8.568195e-01	k: 830438	n:970000
KS ci ratio: 3.919796e-01	ci left: 8.295159e-05	ci right 1.242553e-04	k: 99	n:970000
PCDHA10   970000 perm   586 sec   (1657 perm/sec)   p_kst 1.020619e-04   p_cons 8.561216e-01   p_joint 4.298969e-04

Joint ci ratio: 1.912353e-01	ci left: 3.875952e-04	ci right 4.705061e-04	k: 419	n:980000
Cons ci ratio: 1.622997e-03	ci left: 8.554741e-01	ci right 8.568646e-01	k: 839047	n:980000
KS ci ratio: 3.919798e-01	ci left: 8.210514e-05	ci right 1.229874e-04	k: 99	n:980000
PCDHA10   980000 perm   595 sec   (1646 perm/sec)   p_kst 1.010204e-04   p_cons 8.561704e-01   p_joint 4.275510e-04

Joint ci ratio: 1.914639e-01	ci left: 3.827183e-04	ci right 4.646952e-04	k: 418	n:990000
Cons ci ratio: 1.614247e-03	ci left: 8.555589e-01	ci right 8.569421e-01	k: 847689	n:990000
KS ci ratio: 3.900345e-01	ci left: 8.218658e-05	ci right 1.228540e-04	k: 100	n:990000
PCDHA10   990000 perm   605 sec   (1636 perm/sec)   p_kst 1.010101e-04   p_cons 8.562515e-01   p_joint 4.222222e-04

Joint ci ratio: 1.967000e-01	ci left: 3.579595e-04	ci right 4.369814e-04	k: 396	n:1000000
Cons ci ratio: 1.606126e-03	ci left: 8.555669e-01	ci right 8.569431e-01	k: 856256	n:1000000
KS ci ratio: 3.881178e-01	ci left: 8.226689e-05	ci right 1.227228e-04	k: 101	n:1000000
PCDHA10   1000000 perm   615 sec   (1626 perm/sec)   p_kst 1.010000e-04   p_cons 8.562560e-01   p_joint 3.960000e-04

Joint ci ratio: 2.018525e-01	ci left: 3.356008e-04	ci right 4.118668e-04	k: 376	n:1010000
Cons ci ratio: 1.598166e-03	ci left: 8.555687e-01	ci right 8.569381e-01	k: 864817	n:1010000
KS ci ratio: 3.862292e-01	ci left: 8.234608e-05	ci right 1.225938e-04	k: 102	n:1010000
PCDHA10   1010000 perm   625 sec   (1616 perm/sec)   p_kst 1.009901e-04   p_cons 8.562545e-01   p_joint 3.722772e-04

Joint ci ratio: 2.002649e-01	ci left: 3.378968e-04	ci right 4.140070e-04	k: 382	n:1020000
Cons ci ratio: 1.590581e-03	ci left: 8.555303e-01	ci right 8.568931e-01	k: 873337	n:1020000
KS ci ratio: 3.825330e-01	ci left: 8.331009e-05	ci right 1.235412e-04	k: 104	n:1020000
PCDHA10   1020000 perm   635 sec   (1606 perm/sec)   p_kst 1.019608e-04   p_cons 8.562127e-01   p_joint 3.745098e-04

Joint ci ratio: 1.997443e-01	ci left: 3.364608e-04	ci right 4.120264e-04	k: 384	n:1030000
Cons ci ratio: 1.582730e-03	ci left: 8.555510e-01	ci right 8.569072e-01	k: 881917	n:1030000
KS ci ratio: 3.825331e-01	ci left: 8.250124e-05	ci right 1.223418e-04	k: 104	n:1030000
PCDHA10   1030000 perm   645 sec   (1596 perm/sec)   p_kst 1.009709e-04   p_cons 8.562301e-01   p_joint 3.728155e-04

Joint ci ratio: 1.987146e-01	ci left: 3.368799e-04	ci right 4.121023e-04	k: 388	n:1040000
Cons ci ratio: 1.575338e-03	ci left: 8.555174e-01	ci right 8.568671e-01	k: 890441	n:1040000
KS ci ratio: 3.825333e-01	ci left: 8.170795e-05	ci right 1.211655e-04	k: 104	n:1040000
PCDHA10   1040000 perm   655 sec   (1587 perm/sec)   p_kst 1.000000e-04   p_cons 8.561933e-01   p_joint 3.730769e-04

Joint ci ratio: 1.987150e-01	ci left: 3.336714e-04	ci right 4.081776e-04	k: 388	n:1050000
Cons ci ratio: 1.568097e-03	ci left: 8.554768e-01	ci right 8.568203e-01	k: 898957	n:1050000
KS ci ratio: 3.825335e-01	ci left: 8.092978e-05	ci right 1.200115e-04	k: 104	n:1050000
PCDHA10   1050000 perm   666 sec   (1577 perm/sec)   p_kst 9.904762e-05   p_cons 8.561495e-01   p_joint 3.695238e-04

Joint ci ratio: 1.982063e-01	ci left: 3.323166e-04	ci right 4.063074e-04	k: 390	n:1060000
Cons ci ratio: 1.560650e-03	ci left: 8.554852e-01	ci right 8.568223e-01	k: 907524	n:1060000
KS ci ratio: 3.771828e-01	ci left: 8.272626e-05	ci right 1.219785e-04	k: 107	n:1060000
PCDHA10   1060000 perm   676 sec   (1568 perm/sec)   p_kst 1.009434e-04   p_cons 8.561547e-01   p_joint 3.679245e-04

Joint ci ratio: 1.989717e-01	ci left: 3.265464e-04	ci right 3.995673e-04	k: 387	n:1070000
Cons ci ratio: 1.553626e-03	ci left: 8.554429e-01	ci right 8.567739e-01	k: 916037	n:1070000
KS ci ratio: 3.720505e-01	ci left: 8.449290e-05	ci right 1.239050e-04	k: 110	n:1070000
PCDHA10   1070000 perm   686 sec   (1559 perm/sec)   p_kst 1.028037e-04   p_cons 8.561093e-01   p_joint 3.616822e-04

Joint ci ratio: 1.977018e-01	ci left: 3.279226e-04	ci right 4.007268e-04	k: 392	n:1080000
Cons ci ratio: 1.546940e-03	ci left: 8.553624e-01	ci right 8.566875e-01	k: 924508	n:1080000
KS ci ratio: 3.687431e-01	ci left: 8.539005e-05	ci right 1.247812e-04	k: 112	n:1080000
PCDHA10   1080000 perm   697 sec   (1550 perm/sec)   p_kst 1.037037e-04   p_cons 8.560259e-01   p_joint 3.629630e-04

Joint ci ratio: 1.987163e-01	ci left: 3.214264e-04	ci right 3.931989e-04	k: 388	n:1090000
Cons ci ratio: 1.491859e-03	ci left: 8.630067e-01	ci right 8.642960e-01	k: 941381	n:1090000
KS ci ratio: 3.671223e-01	ci left: 8.543927e-05	ci right 1.246383e-04	k: 113	n:1090000
PCDHA10   1090000 perm   707 sec   (1542 perm/sec)   p_kst 1.036697e-04   p_cons 8.636523e-01   p_joint 3.559633e-04

Joint ci ratio: 1.982076e-01	ci left: 3.202322e-04	ci right 3.915328e-04	k: 390	n:1100000
Cons ci ratio: 1.485008e-03	ci left: 8.630182e-01	ci right 8.643017e-01	k: 950027	n:1100000
KS ci ratio: 3.639435e-01	ci left: 8.631374e-05	ci right 1.254897e-04	k: 115	n:1100000
PCDHA10   1100000 perm   717 sec   (1533 perm/sec)   p_kst 1.045455e-04   p_cons 8.636609e-01   p_joint 3.545455e-04

Joint ci ratio: 1.977027e-01	ci left: 3.190597e-04	ci right 3.898965e-04	k: 392	n:1110000
Cons ci ratio: 1.478404e-03	ci left: 8.630053e-01	ci right 8.642829e-01	k: 958646	n:1110000
KS ci ratio: 3.639437e-01	ci left: 8.553613e-05	ci right 1.243591e-04	k: 115	n:1110000
PCDHA10   1110000 perm   728 sec   (1525 perm/sec)   p_kst 1.036036e-04   p_cons 8.636450e-01   p_joint 3.531532e-04

Joint ci ratio: 1.994883e-01	ci left: 3.102715e-04	ci right 3.798551e-04	k: 385	n:1120000
Cons ci ratio: 1.471914e-03	ci left: 8.629880e-01	ci right 8.642601e-01	k: 967260	n:1120000
KS ci ratio: 3.639439e-01	ci left: 8.477241e-05	ci right 1.232488e-04	k: 115	n:1120000
PCDHA10   1120000 perm   738 sec   (1517 perm/sec)   p_kst 1.026786e-04   p_cons 8.636250e-01   p_joint 3.437500e-04

Joint ci ratio: 1.997476e-01	ci left: 3.066850e-04	ci right 3.755645e-04	k: 384	n:1130000
Cons ci ratio: 1.465355e-03	ci left: 8.629960e-01	ci right 8.642623e-01	k: 975902	n:1130000
KS ci ratio: 3.578262e-01	ci left: 8.724113e-05	ci right 1.260175e-04	k: 119	n:1130000
PCDHA10   1130000 perm   749 sec   (1509 perm/sec)   p_kst 1.053097e-04   p_cons 8.636301e-01   p_joint 3.398230e-04

Joint ci ratio: 1.992309e-01	ci left: 3.056615e-04	ci right 3.741120e-04	k: 386	n:1140000
Cons ci ratio: 1.459030e-03	ci left: 8.629800e-01	ci right 8.642409e-01	k: 984517	n:1140000
KS ci ratio: 3.563446e-01	ci left: 8.727437e-05	ci right 1.258676e-04	k: 120	n:1140000
PCDHA10   1140000 perm   759 sec   (1502 perm/sec)   p_kst 1.052632e-04   p_cons 8.636114e-01   p_joint 3.385965e-04

Joint ci ratio: 1.997482e-01	ci left: 3.013513e-04	ci right 3.690331e-04	k: 384	n:1150000
Cons ci ratio: 1.452700e-03	ci left: 8.629783e-01	ci right 8.642337e-01	k: 993148	n:1150000
KS ci ratio: 3.563447e-01	ci left: 8.651545e-05	ci right 1.247731e-04	k: 120	n:1150000
PCDHA10   1150000 perm   770 sec   (1493 perm/sec)   p_kst 1.043478e-04   p_cons 8.636070e-01   p_joint 3.339130e-04

Joint ci ratio: 2.018574e-01	ci left: 2.922034e-04	ci right 3.586091e-04	k: 376	n:1160000
Cons ci ratio: 1.446266e-03	ci left: 8.630069e-01	ci right 8.642568e-01	k: 1001814	n:1160000
KS ci ratio: 3.548813e-01	ci left: 8.655469e-05	ci right 1.246363e-04	k: 121	n:1160000
PCDHA10   1160000 perm   782 sec   (1484 perm/sec)   p_kst 1.043103e-04   p_cons 8.636328e-01   p_joint 3.241379e-04

Joint ci ratio: 1.552737e-01	ci left: 5.021687e-04	ci right 5.875149e-04	k: 636	n:1170000
Cons ci ratio: 1.439933e-03	ci left: 8.630324e-01	ci right 8.642769e-01	k: 1010477	n:1170000
KS ci ratio: 3.505966e-01	ci left: 8.815185e-05	ci right 1.263614e-04	k: 124	n:1170000
PCDHA10   1170000 perm   793 sec   (1476 perm/sec)   p_kst 1.059829e-04   p_cons 8.636556e-01   p_joint 5.435897e-04

Joint ci ratio: 1.556412e-01	ci left: 4.954694e-04	ci right 5.798949e-04	k: 633	n:1180000
Cons ci ratio: 1.433898e-03	ci left: 8.630219e-01	ci right 8.642611e-01	k: 1019098	n:1180000
KS ci ratio: 3.492026e-01	ci left: 8.817778e-05	ci right 1.262122e-04	k: 125	n:1180000
PCDHA10   1180000 perm   803 sec   (1469 perm/sec)   p_kst 1.059322e-04   p_cons 8.636424e-01   p_joint 5.364407e-04

Joint ci ratio: 1.551526e-01	ci left: 4.945364e-04	ci right 5.785138e-04	k: 637	n:1190000
Cons ci ratio: 1.427858e-03	ci left: 8.630250e-01	ci right 8.642590e-01	k: 1027735	n:1190000
KS ci ratio: 3.492027e-01	ci left: 8.743678e-05	ci right 1.251516e-04	k: 125	n:1190000
PCDHA10   1190000 perm   814 sec   (1461 perm/sec)   p_kst 1.050420e-04   p_cons 8.636429e-01   p_joint 5.352941e-04

Joint ci ratio: 1.547893e-01	ci left: 4.928183e-04	ci right 5.762898e-04	k: 640	n:1200000
Cons ci ratio: 1.421994e-03	ci left: 8.630113e-01	ci right 8.642402e-01	k: 1036352	n:1200000
KS ci ratio: 3.478252e-01	ci left: 8.746853e-05	ci right 1.250146e-04	k: 126	n:1200000
PCDHA10   1200000 perm   826 sec   (1453 perm/sec)   p_kst 1.050000e-04   p_cons 8.636267e-01   p_joint 5.333333e-04

Joint ci ratio: 1.560120e-01	ci left: 4.808021e-04	ci right 5.629418e-04	k: 630	n:1210000
Cons ci ratio: 1.416182e-03	ci left: 8.630013e-01	ci right 8.642251e-01	k: 1044973	n:1210000
KS ci ratio: 3.478254e-01	ci left: 8.674565e-05	ci right 1.239815e-04	k: 126	n:1210000
PCDHA10   1210000 perm   838 sec   (1444 perm/sec)   p_kst 1.041322e-04   p_cons 8.636140e-01   p_joint 5.206612e-04

Joint ci ratio: 1.556426e-01	ci left: 4.792242e-04	ci right 5.608823e-04	k: 633	n:1220000
Cons ci ratio: 1.410661e-03	ci left: 8.629544e-01	ci right 8.641734e-01	k: 1053549	n:1220000
KS ci ratio: 3.478255e-01	ci left: 8.603461e-05	ci right 1.229652e-04	k: 126	n:1220000
PCDHA10   1220000 perm   850 sec   (1436 perm/sec)   p_kst 1.032787e-04   p_cons 8.635648e-01   p_joint 5.188525e-04

Joint ci ratio: 1.545492e-01	ci left: 4.823612e-04	ci right 5.639231e-04	k: 642	n:1230000
Cons ci ratio: 1.405024e-03	ci left: 8.629384e-01	ci right 8.641525e-01	k: 1062162	n:1230000
KS ci ratio: 3.464642e-01	ci left: 8.607727e-05	ci right 1.228491e-04	k: 127	n:1230000
PCDHA10   1230000 perm   861 sec   (1428 perm/sec)   p_kst 1.032520e-04   p_cons 8.635463e-01   p_joint 5.219512e-04

Joint ci ratio: 1.538331e-01	ci left: 4.831233e-04	ci right 5.644005e-04	k: 648	n:1240000
Cons ci ratio: 1.399110e-03	ci left: 8.629809e-01	ci right 8.641900e-01	k: 1070847	n:1240000
KS ci ratio: 3.451187e-01	ci left: 8.611952e-05	ci right 1.227346e-04	k: 128	n:1240000
PCDHA10   1240000 perm   873 sec   (1421 perm/sec)   p_kst 1.032258e-04   p_cons 8.635863e-01   p_joint 5.225806e-04

Joint ci ratio: 1.535968e-01	ci left: 4.807967e-04	ci right 5.615469e-04	k: 650	n:1250000
Cons ci ratio: 1.393544e-03	ci left: 8.629763e-01	ci right 8.641805e-01	k: 1079474	n:1250000
KS ci ratio: 3.451188e-01	ci left: 8.543056e-05	ci right 1.217528e-04	k: 128	n:1250000
PCDHA10   1250000 perm   885 sec   (1413 perm/sec)   p_kst 1.024000e-04   p_cons 8.635792e-01   p_joint 5.200000e-04

Joint ci ratio: 1.533616e-01	ci left: 4.785071e-04	ci right 5.587384e-04	k: 652	n:1260000
Cons ci ratio: 1.388007e-03	ci left: 8.629780e-01	ci right 8.641774e-01	k: 1088109	n:1260000
KS ci ratio: 3.451190e-01	ci left: 8.475253e-05	ci right 1.207865e-04	k: 128	n:1260000
PCDHA10   1260000 perm   896 sec   (1406 perm/sec)   p_kst 1.015873e-04   p_cons 8.635786e-01   p_joint 5.174603e-04

Joint ci ratio: 1.526618e-01	ci left: 4.792829e-04	ci right 5.592441e-04	k: 658	n:1270000
Cons ci ratio: 1.382327e-03	ci left: 8.630153e-01	ci right 8.642098e-01	k: 1096789	n:1270000
KS ci ratio: 3.437890e-01	ci left: 8.480448e-05	ci right 1.206907e-04	k: 129	n:1270000
PCDHA10   1270000 perm   908 sec   (1398 perm/sec)   p_kst 1.015748e-04   p_cons 8.636134e-01   p_joint 5.181102e-04

Joint ci ratio: 1.518573e-01	ci left: 4.807989e-04	ci right 5.605519e-04	k: 665	n:1280000
Cons ci ratio: 1.376735e-03	ci left: 8.630488e-01	ci right 8.642386e-01	k: 1105465	n:1280000
KS ci ratio: 3.411745e-01	ci left: 8.557007e-05	ci right 1.214441e-04	k: 131	n:1280000
PCDHA10   1280000 perm   920 sec   (1391 perm/sec)   p_kst 1.023438e-04   p_cons 8.636445e-01   p_joint 5.195313e-04

Joint ci ratio: 1.540724e-01	ci left: 4.629065e-04	ci right 5.409150e-04	k: 646	n:1290000
Cons ci ratio: 1.371264e-03	ci left: 8.630725e-01	ci right 8.642576e-01	k: 1114129	n:1290000
KS ci ratio: 3.411746e-01	ci left: 8.490674e-05	ci right 1.205027e-04	k: 131	n:1290000
PCDHA10   1290000 perm   932 sec   (1384 perm/sec)   p_kst 1.015504e-04   p_cons 8.636659e-01   p_joint 5.007752e-04

Joint ci ratio: 1.570138e-01	ci left: 4.416023e-04	ci right 5.175751e-04	k: 622	n:1300000
Cons ci ratio: 1.345014e-03	ci left: 8.666833e-01	ci right 8.678505e-01	k: 1127448	n:1300000
KS ci ratio: 3.411748e-01	ci left: 8.425360e-05	ci right 1.195758e-04	k: 131	n:1300000
PCDHA10   1300000 perm   944 sec   (1377 perm/sec)   p_kst 1.007692e-04   p_cons 8.672677e-01   p_joint 4.784615e-04

Joint ci ratio: 1.570141e-01	ci left: 4.382312e-04	ci right 5.136242e-04	k: 622	n:1310000
Cons ci ratio: 1.339864e-03	ci left: 8.666865e-01	ci right 8.678493e-01	k: 1136122	n:1310000
KS ci ratio: 3.411749e-01	ci left: 8.361044e-05	ci right 1.186630e-04	k: 131	n:1310000
PCDHA10   1310000 perm   957 sec   (1369 perm/sec)   p_kst 1.000000e-04   p_cons 8.672687e-01   p_joint 4.748092e-04

Joint ci ratio: 1.563878e-01	ci left: 4.385506e-04	ci right 5.136694e-04	k: 627	n:1320000
Cons ci ratio: 1.334712e-03	ci left: 8.667003e-01	ci right 8.678586e-01	k: 1144810	n:1320000
KS ci ratio: 3.411750e-01	ci left: 8.297702e-05	ci right 1.177640e-04	k: 131	n:1320000
PCDHA10   1320000 perm   969 sec   (1362 perm/sec)   p_kst 9.924242e-05   p_cons 8.672803e-01   p_joint 4.750000e-04

Joint ci ratio: 1.586797e-01	ci left: 4.222526e-04	ci right 4.957407e-04	k: 609	n:1330000
Cons ci ratio: 1.329554e-03	ci left: 8.667253e-01	ci right 8.678791e-01	k: 1153513	n:1330000
KS ci ratio: 3.386192e-01	ci left: 8.372856e-05	ci right 1.185102e-04	k: 133	n:1330000
PCDHA10   1330000 perm   981 sec   (1355 perm/sec)   p_kst 1.000000e-04   p_cons 8.673030e-01   p_joint 4.578947e-04

Joint ci ratio: 1.584204e-01	ci left: 4.205348e-04	ci right 4.935929e-04	k: 611	n:1340000
Cons ci ratio: 1.324717e-03	ci left: 8.667042e-01	ci right 8.678539e-01	k: 1162155	n:1340000
KS ci ratio: 3.386194e-01	ci left: 8.310372e-05	ci right 1.176258e-04	k: 133	n:1340000
PCDHA10   1340000 perm   994 sec   (1348 perm/sec)   p_kst 9.925373e-05   p_cons 8.672799e-01   p_joint 4.559701e-04

Joint ci ratio: 1.581623e-01	ci left: 4.188425e-04	ci right 4.914768e-04	k: 613	n:1350000
Cons ci ratio: 1.319766e-03	ci left: 8.667125e-01	ci right 8.678578e-01	k: 1170836	n:1350000
KS ci ratio: 3.373629e-01	ci left: 8.316601e-05	ci right 1.175579e-04	k: 134	n:1350000
PCDHA10   1350000 perm   1006 sec   (1341 perm/sec)   p_kst 9.925926e-05   p_cons 8.672859e-01   p_joint 4.540741e-04

Joint ci ratio: 1.580339e-01	ci left: 4.164689e-04	ci right 4.886274e-04	k: 614	n:1360000
Cons ci ratio: 1.314779e-03	ci left: 8.667368e-01	ci right 8.678778e-01	k: 1179539	n:1360000
KS ci ratio: 3.361203e-01	ci left: 8.322762e-05	ci right 1.174907e-04	k: 135	n:1360000
PCDHA10   1360000 perm   1019 sec   (1335 perm/sec)   p_kst 9.926471e-05   p_cons 8.673081e-01   p_joint 4.514706e-04

Joint ci ratio: 1.573953e-01	ci left: 4.169346e-04	ci right 4.888543e-04	k: 619	n:1370000
Cons ci ratio: 1.310038e-03	ci left: 8.667271e-01	ci right 8.678640e-01	k: 1188196	n:1370000
KS ci ratio: 3.361204e-01	ci left: 8.262012e-05	ci right 1.166331e-04	k: 135	n:1370000
PCDHA10   1370000 perm   1032 sec   (1328 perm/sec)   p_kst 9.854015e-05   p_cons 8.672964e-01   p_joint 4.518248e-04

Joint ci ratio: 1.572687e-01	ci left: 4.146094e-04	ci right 4.860651e-04	k: 620	n:1380000
Cons ci ratio: 1.305209e-03	ci left: 8.667423e-01	ci right 8.678750e-01	k: 1196887	n:1380000
KS ci ratio: 3.361205e-01	ci left: 8.202142e-05	ci right 1.157880e-04	k: 135	n:1380000
PCDHA10   1380000 perm   1044 sec   (1321 perm/sec)   p_kst 9.782609e-05   p_cons 8.673094e-01   p_joint 4.492754e-04

Joint ci ratio: 1.567647e-01	ci left: 4.143912e-04	ci right 4.855589e-04	k: 624	n:1390000
Cons ci ratio: 1.300465e-03	ci left: 8.667515e-01	ci right 8.678801e-01	k: 1205570	n:1390000
KS ci ratio: 3.336759e-01	ci left: 8.274921e-05	ci right 1.165144e-04	k: 137	n:1390000
PCDHA10   1390000 perm   1057 sec   (1315 perm/sec)   p_kst 9.856115e-05   p_cons 8.673165e-01   p_joint 4.489209e-04

Joint ci ratio: 1.557707e-01	ci left: 4.169222e-04	ci right 4.880281e-04	k: 632	n:1400000
Cons ci ratio: 1.295773e-03	ci left: 8.667605e-01	ci right 8.678851e-01	k: 1214253	n:1400000
KS ci ratio: 3.336760e-01	ci left: 8.215814e-05	ci right 1.156821e-04	k: 137	n:1400000
PCDHA10   1400000 perm   1070 sec   (1309 perm/sec)   p_kst 9.785714e-05   p_cons 8.673236e-01   p_joint 4.514286e-04

Joint ci ratio: 1.572695e-01	ci left: 4.057878e-04	ci right 4.757235e-04	k: 620	n:1410000
Cons ci ratio: 1.291167e-03	ci left: 8.667631e-01	ci right 8.678836e-01	k: 1222927	n:1410000
KS ci ratio: 3.324736e-01	ci left: 8.222537e-05	ci right 1.156300e-04	k: 138	n:1410000
PCDHA10   1410000 perm   1082 sec   (1303 perm/sec)   p_kst 9.787234e-05   p_cons 8.673241e-01   p_joint 4.397163e-04

Joint ci ratio: 1.568911e-01	ci left: 4.049597e-04	ci right 4.745690e-04	k: 623	n:1420000
Cons ci ratio: 1.286633e-03	ci left: 8.667614e-01	ci right 8.678780e-01	k: 1231595	n:1420000
KS ci ratio: 3.324737e-01	ci left: 8.164632e-05	ci right 1.148157e-04	k: 138	n:1420000
PCDHA10   1420000 perm   1095 sec   (1297 perm/sec)   p_kst 9.718310e-05   p_cons 8.673204e-01   p_joint 4.387324e-04

Joint ci ratio: 1.562662e-01	ci left: 4.054874e-04	ci right 4.748837e-04	k: 628	n:1430000
Cons ci ratio: 1.282380e-03	ci left: 8.667177e-01	ci right 8.678305e-01	k: 1240203	n:1430000
KS ci ratio: 3.324738e-01	ci left: 8.107536e-05	ci right 1.140128e-04	k: 138	n:1430000
PCDHA10   1430000 perm   1108 sec   (1291 perm/sec)   p_kst 9.650350e-05   p_cons 8.672748e-01   p_joint 4.391608e-04

Joint ci ratio: 1.563909e-01	ci left: 4.020041e-04	ci right 4.708644e-04	k: 627	n:1440000
Cons ci ratio: 1.277637e-03	ci left: 8.667706e-01	ci right 8.678794e-01	k: 1248949	n:1440000
KS ci ratio: 3.312842e-01	ci left: 8.114892e-05	ci right 1.139731e-04	k: 139	n:1440000
PCDHA10   1440000 perm   1121 sec   (1285 perm/sec)   p_kst 9.652778e-05   p_cons 8.673257e-01   p_joint 4.354167e-04

Joint ci ratio: 1.568918e-01	ci left: 3.965811e-04	ci right 4.647505e-04	k: 623	n:1450000
Cons ci ratio: 1.273328e-03	ci left: 8.667536e-01	ci right 8.678587e-01	k: 1257595	n:1450000
KS ci ratio: 3.312844e-01	ci left: 8.058927e-05	ci right 1.131871e-04	k: 139	n:1450000
PCDHA10   1450000 perm   1134 sec   (1279 perm/sec)   p_kst 9.586207e-05   p_cons 8.673069e-01   p_joint 4.296552e-04

Joint ci ratio: 1.562669e-01	ci left: 3.971553e-04	ci right 4.651260e-04	k: 628	n:1460000
Cons ci ratio: 1.268956e-03	ci left: 8.667562e-01	ci right 8.678574e-01	k: 1266269	n:1460000
KS ci ratio: 3.289430e-01	ci left: 8.129364e-05	ci right 1.138949e-04	k: 141	n:1460000
PCDHA10   1460000 perm   1147 sec   (1273 perm/sec)   p_kst 9.657534e-05   p_cons 8.673075e-01   p_joint 4.301370e-04

Joint ci ratio: 1.556495e-01	ci left: 3.977222e-04	ci right 4.654959e-04	k: 633	n:1470000
Cons ci ratio: 1.264529e-03	ci left: 8.667771e-01	ci right 8.678745e-01	k: 1274970	n:1470000
KS ci ratio: 3.277908e-01	ci left: 8.136482e-05	ci right 1.138562e-04	k: 142	n:1470000
PCDHA10   1470000 perm   1161 sec   (1266 perm/sec)   p_kst 9.659864e-05   p_cons 8.673265e-01   p_joint 4.306122e-04

Joint ci ratio: 1.551608e-01	ci left: 3.976325e-04	ci right 4.651583e-04	k: 637	n:1480000
Cons ci ratio: 1.260309e-03	ci left: 8.667680e-01	ci right 8.678617e-01	k: 1283627	n:1480000
KS ci ratio: 3.277909e-01	ci left: 8.081505e-05	ci right 1.130869e-04	k: 142	n:1480000
PCDHA10   1480000 perm   1174 sec   (1260 perm/sec)   p_kst 9.594595e-05   p_cons 8.673155e-01   p_joint 4.304054e-04

Joint ci ratio: 1.551610e-01	ci left: 3.949637e-04	ci right 4.620365e-04	k: 637	n:1490000
Cons ci ratio: 1.256162e-03	ci left: 8.667536e-01	ci right 8.678437e-01	k: 1292276	n:1490000
KS ci ratio: 3.266508e-01	ci left: 8.088869e-05	ci right 1.130540e-04	k: 143	n:1490000
PCDHA10   1490000 perm   1188 sec   (1254 perm/sec)   p_kst 9.597315e-05   p_cons 8.672993e-01   p_joint 4.275168e-04

Joint ci ratio: 1.547976e-01	ci left: 3.942531e-04	ci right 4.610338e-04	k: 640	n:1500000
Cons ci ratio: 1.251982e-03	ci left: 8.667527e-01	ci right 8.678392e-01	k: 1300945	n:1500000
KS ci ratio: 3.266509e-01	ci left: 8.034943e-05	ci right 1.123003e-04	k: 143	n:1500000
PCDHA10   1500000 perm   1201 sec   (1249 perm/sec)   p_kst 9.533333e-05   p_cons 8.672967e-01   p_joint 4.266667e-04

Joint ci ratio: 1.541973e-01	ci left: 3.948254e-04	ci right 4.614198e-04	k: 645	n:1510000
Cons ci ratio: 1.247779e-03	ci left: 8.667638e-01	ci right 8.678467e-01	k: 1309632	n:1510000
KS ci ratio: 3.255225e-01	ci left: 8.042536e-05	ci right 1.122729e-04	k: 144	n:1510000
PCDHA10   1510000 perm   1215 sec   (1243 perm/sec)   p_kst 9.536424e-05   p_cons 8.673060e-01   p_joint 4.271523e-04

Joint ci ratio: 1.557735e-01	ci left: 3.840067e-04	ci right 4.495003e-04	k: 632	n:1520000
Cons ci ratio: 1.243860e-03	ci left: 8.667300e-01	ci right 8.678094e-01	k: 1318251	n:1520000
KS ci ratio: 3.255226e-01	ci left: 7.989624e-05	ci right 1.115343e-04	k: 144	n:1520000
PCDHA10   1520000 perm   1229 sec   (1237 perm/sec)   p_kst 9.473684e-05   p_cons 8.672704e-01   p_joint 4.157895e-04

Joint ci ratio: 1.552837e-01	ci left: 3.840095e-04	ci right 4.492784e-04	k: 636	n:1530000
Cons ci ratio: 1.239850e-03	ci left: 8.667202e-01	ci right 8.677961e-01	k: 1326906	n:1530000
KS ci ratio: 3.255227e-01	ci left: 7.937404e-05	ci right 1.108053e-04	k: 144	n:1530000
PCDHA10   1530000 perm   1243 sec   (1231 perm/sec)   p_kst 9.411765e-05   p_cons 8.672588e-01   p_joint 4.156863e-04

Joint ci ratio: 1.576538e-01	ci left: 3.696611e-04	ci right 4.335410e-04	k: 617	n:1540000
Cons ci ratio: 1.235925e-03	ci left: 8.667020e-01	ci right 8.677745e-01	k: 1335548	n:1540000
KS ci ratio: 3.255228e-01	ci left: 7.885862e-05	ci right 1.100858e-04	k: 144	n:1540000
PCDHA10   1540000 perm   1257 sec   (1225 perm/sec)   p_kst 9.350649e-05   p_cons 8.672390e-01   p_joint 4.006494e-04

Joint ci ratio: 1.568939e-01	ci left: 3.709948e-04	ci right 4.347671e-04	k: 623	n:1550000
Cons ci ratio: 1.232085e-03	ci left: 8.666751e-01	ci right 8.677442e-01	k: 1344176	n:1550000
KS ci ratio: 3.244061e-01	ci left: 7.894239e-05	ci right 1.100732e-04	k: 145	n:1550000
PCDHA10   1550000 perm   1271 sec   (1220 perm/sec)   p_kst 9.354839e-05   p_cons 8.672103e-01   p_joint 4.019355e-04

Joint ci ratio: 1.596038e-01	ci left: 3.556879e-04	ci right 4.179863e-04	k: 602	n:1560000
Cons ci ratio: 1.227942e-03	ci left: 8.667121e-01	ci right 8.677776e-01	k: 1352903	n:1560000
KS ci ratio: 3.233008e-01	ci left: 7.902527e-05	ci right 1.100605e-04	k: 146	n:1560000
PCDHA10   1560000 perm   1285 sec   (1214 perm/sec)   p_kst 9.358974e-05   p_cons 8.672455e-01   p_joint 3.858974e-04

Joint ci ratio: 1.614904e-01	ci left: 3.448633e-04	ci right 4.060490e-04	k: 588	n:1570000
Cons ci ratio: 1.224027e-03	ci left: 8.667135e-01	ci right 8.677756e-01	k: 1361575	n:1570000
KS ci ratio: 3.222067e-01	ci left: 7.910727e-05	ci right 1.100479e-04	k: 147	n:1570000
PCDHA10   1570000 perm   1299 sec   (1209 perm/sec)   p_kst 9.363057e-05   p_cons 8.672452e-01   p_joint 3.745223e-04

Joint ci ratio: 1.609448e-01	ci left: 3.451101e-04	ci right 4.061127e-04	k: 592	n:1580000
Cons ci ratio: 1.220142e-03	ci left: 8.667161e-01	ci right 8.677749e-01	k: 1370249	n:1580000
KS ci ratio: 3.211237e-01	ci left: 7.918841e-05	ci right 1.100352e-04	k: 148	n:1580000
PCDHA10   1580000 perm   1313 sec   (1203 perm/sec)   p_kst 9.367089e-05   p_cons 8.672462e-01   p_joint 3.746835e-04

Joint ci ratio: 1.605393e-01	ci left: 3.447505e-04	ci right 4.055212e-04	k: 595	n:1590000
Cons ci ratio: 1.216357e-03	ci left: 8.667068e-01	ci right 8.677623e-01	k: 1378904	n:1590000
KS ci ratio: 3.189898e-01	ci left: 7.984720e-05	ci right 1.107017e-04	k: 150	n:1590000
PCDHA10   1590000 perm   1327 sec   (1198 perm/sec)   p_kst 9.433962e-05   p_cons 8.672352e-01   p_joint 3.742138e-04

Joint ci ratio: 1.598701e-01	ci left: 3.455956e-04	ci right 4.062369e-04	k: 600	n:1600000
Cons ci ratio: 1.212478e-03	ci left: 8.667220e-01	ci right 8.677741e-01	k: 1387598	n:1600000
KS ci ratio: 3.168980e-01	ci left: 8.049842e-05	ci right 1.113592e-04	k: 152	n:1600000
PCDHA10   1600000 perm   1341 sec   (1193 perm/sec)   p_kst 9.500000e-05   p_cons 8.672488e-01   p_joint 3.750000e-04

Joint ci ratio: 1.590778e-01	ci left: 3.470270e-04	ci right 4.075889e-04	k: 606	n:1610000
Cons ci ratio: 1.208833e-03	ci left: 8.666997e-01	ci right 8.677486e-01	k: 1396232	n:1610000
KS ci ratio: 3.168981e-01	ci left: 7.999842e-05	ci right 1.106676e-04	k: 152	n:1610000
PCDHA10   1610000 perm   1356 sec   (1188 perm/sec)   p_kst 9.440994e-05   p_cons 8.672248e-01   p_joint 3.763975e-04

Joint ci ratio: 1.588165e-01	ci left: 3.460703e-04	ci right 4.063566e-04	k: 608	n:1620000
Cons ci ratio: 1.205003e-03	ci left: 8.667191e-01	ci right 8.677647e-01	k: 1404933	n:1620000
KS ci ratio: 3.168982e-01	ci left: 7.950460e-05	ci right 1.099844e-04	k: 152	n:1620000
PCDHA10   1620000 perm   1370 sec   (1182 perm/sec)   p_kst 9.382716e-05   p_cons 8.672426e-01   p_joint 3.753086e-04

Joint ci ratio: 1.584268e-01	ci left: 3.457146e-04	ci right 4.057771e-04	k: 611	n:1630000
Cons ci ratio: 1.201318e-03	ci left: 8.667174e-01	ci right 8.677598e-01	k: 1413600	n:1630000
KS ci ratio: 3.168982e-01	ci left: 7.901684e-05	ci right 1.093097e-04	k: 152	n:1630000
PCDHA10   1630000 perm   1384 sec   (1178 perm/sec)   p_kst 9.325153e-05   p_cons 8.672393e-01   p_joint 3.748466e-04

Joint ci ratio: 1.577835e-01	ci left: 3.465348e-04	ci right 4.064722e-04	k: 616	n:1640000
Cons ci ratio: 1.197613e-03	ci left: 8.667261e-01	ci right 8.677653e-01	k: 1422284	n:1640000
KS ci ratio: 3.158677e-01	ci left: 7.909638e-05	ci right 1.093012e-04	k: 153	n:1640000
PCDHA10   1640000 perm   1399 sec   (1172 perm/sec)   p_kst 9.329268e-05   p_cons 8.672463e-01   p_joint 3.756098e-04

Joint ci ratio: 1.574014e-01	ci left: 3.461810e-04	ci right 4.058985e-04	k: 619	n:1650000
Cons ci ratio: 1.193930e-03	ci left: 8.667371e-01	ci right 8.677731e-01	k: 1430972	n:1650000
KS ci ratio: 3.148471e-01	ci left: 7.917510e-05	ci right 1.092926e-04	k: 154	n:1650000
PCDHA10   1650000 perm   1414 sec   (1167 perm/sec)   p_kst 9.333333e-05   p_cons 8.672558e-01   p_joint 3.751515e-04

Joint ci ratio: 1.571482e-01	ci left: 3.452530e-04	ci right 4.047056e-04	k: 621	n:1660000
Cons ci ratio: 1.190212e-03	ci left: 8.667613e-01	ci right 8.677941e-01	k: 1439682	n:1660000
KS ci ratio: 3.138363e-01	ci left: 7.925304e-05	ci right 1.092840e-04	k: 155	n:1660000
PCDHA10   1660000 perm   1428 sec   (1162 perm/sec)   p_kst 9.337349e-05   p_cons 8.672783e-01   p_joint 3.740964e-04

Joint ci ratio: 1.570221e-01	ci left: 3.437609e-04	ci right 4.029045e-04	k: 622	n:1670000
Cons ci ratio: 1.186633e-03	ci left: 8.667647e-01	ci right 8.677945e-01	k: 1448358	n:1670000
KS ci ratio: 3.138364e-01	ci left: 7.877846e-05	ci right 1.086296e-04	k: 155	n:1670000
PCDHA10   1670000 perm   1443 sec   (1157 perm/sec)   p_kst 9.281437e-05   p_cons 8.672802e-01   p_joint 3.724551e-04

Joint ci ratio: 1.566455e-01	ci left: 3.434303e-04	ci right 4.023620e-04	k: 625	n:1680000
Cons ci ratio: 1.183046e-03	ci left: 8.667759e-01	ci right 8.678026e-01	k: 1457047	n:1680000
KS ci ratio: 3.118437e-01	ci left: 7.940657e-05	ci right 1.092666e-04	k: 157	n:1680000
PCDHA10   1680000 perm   1457 sec   (1153 perm/sec)   p_kst 9.345238e-05   p_cons 8.672899e-01   p_joint 3.720238e-04

Joint ci ratio: 1.562715e-01	ci left: 3.431038e-04	ci right 4.018258e-04	k: 628	n:1690000
Cons ci ratio: 1.179319e-03	ci left: 8.668208e-01	ci right 8.678442e-01	k: 1465793	n:1690000
KS ci ratio: 3.118438e-01	ci left: 7.893671e-05	ci right 1.086201e-04	k: 157	n:1690000
PCDHA10   1690000 perm   1472 sec   (1148 perm/sec)   p_kst 9.289941e-05   p_cons 8.673331e-01   p_joint 3.715976e-04

Joint ci ratio: 1.557770e-01	ci left: 3.433466e-04	ci right 4.019068e-04	k: 632	n:1700000
Cons ci ratio: 1.175913e-03	ci left: 8.668091e-01	ci right 8.678296e-01	k: 1474444	n:1700000
KS ci ratio: 3.108616e-01	ci left: 7.901466e-05	ci right 1.086152e-04	k: 158	n:1700000
PCDHA10   1700000 perm   1488 sec   (1143 perm/sec)   p_kst 9.294118e-05   p_cons 8.673200e-01   p_joint 3.717647e-04

Joint ci ratio: 1.551653e-01	ci left: 3.441490e-04	ci right 4.025941e-04	k: 637	n:1710000
Cons ci ratio: 1.172410e-03	ci left: 8.668222e-01	ci right 8.678397e-01	k: 1483137	n:1710000
KS ci ratio: 3.108617e-01	ci left: 7.855258e-05	ci right 1.079800e-04	k: 158	n:1710000
PCDHA10   1710000 perm   1503 sec   (1138 perm/sec)   p_kst 9.239766e-05   p_cons 8.673316e-01   p_joint 3.725146e-04

Joint ci ratio: 1.543209e-01	ci left: 3.460603e-04	ci right 4.044807e-04	k: 644	n:1720000
Cons ci ratio: 1.168983e-03	ci left: 8.668265e-01	ci right 8.678409e-01	k: 1491815	n:1720000
KS ci ratio: 3.089247e-01	ci left: 7.916826e-05	ci right 1.086052e-04	k: 160	n:1720000
PCDHA10   1720000 perm   1518 sec   (1133 perm/sec)   p_kst 9.302326e-05   p_cons 8.673343e-01   p_joint 3.744186e-04

Joint ci ratio: 1.540822e-01	ci left: 3.451714e-04	ci right 4.033433e-04	k: 646	n:1730000
Cons ci ratio: 1.165736e-03	ci left: 8.668011e-01	ci right 8.678127e-01	k: 1500442	n:1730000
KS ci ratio: 3.089248e-01	ci left: 7.871064e-05	ci right 1.079774e-04	k: 160	n:1730000
PCDHA10   1730000 perm   1533 sec   (1129 perm/sec)   p_kst 9.248555e-05   p_cons 8.673075e-01   p_joint 3.734104e-04

Joint ci ratio: 1.536081e-01	ci left: 3.453981e-04	ci right 4.034125e-04	k: 650	n:1740000
Cons ci ratio: 1.162378e-03	ci left: 8.668031e-01	ci right 8.678118e-01	k: 1509116	n:1740000
KS ci ratio: 3.079699e-01	ci left: 7.878851e-05	ci right 1.079759e-04	k: 161	n:1740000
PCDHA10   1740000 perm   1548 sec   (1124 perm/sec)   p_kst 9.252874e-05   p_cons 8.673080e-01   p_joint 3.735632e-04

Joint ci ratio: 1.530216e-01	ci left: 3.461719e-04	ci right 4.040739e-04	k: 655	n:1750000
Cons ci ratio: 1.158998e-03	ci left: 8.668154e-01	ci right 8.678211e-01	k: 1517808	n:1750000
KS ci ratio: 3.060861e-01	ci left: 7.939312e-05	ci right 1.085895e-04	k: 163	n:1750000
PCDHA10   1750000 perm   1563 sec   (1119 perm/sec)   p_kst 9.314286e-05   p_cons 8.673189e-01   p_joint 3.742857e-04

Joint ci ratio: 1.533730e-01	ci left: 3.425658e-04	ci right 4.000083e-04	k: 652	n:1760000
Cons ci ratio: 1.155738e-03	ci left: 8.668093e-01	ci right 8.678122e-01	k: 1526468	n:1760000
KS ci ratio: 3.060862e-01	ci left: 7.894202e-05	ci right 1.079725e-04	k: 163	n:1760000
PCDHA10   1760000 perm   1579 sec   (1115 perm/sec)   p_kst 9.261364e-05   p_cons 8.673114e-01   p_joint 3.704545e-04

Joint ci ratio: 1.529053e-01	ci left: 3.428036e-04	ci right 4.000948e-04	k: 656	n:1770000
Cons ci ratio: 1.152271e-03	ci left: 8.668503e-01	ci right 8.678502e-01	k: 1535211	n:1770000
KS ci ratio: 3.051573e-01	ci left: 7.901767e-05	ci right 1.079707e-04	k: 164	n:1770000
PCDHA10   1770000 perm   1595 sec   (1110 perm/sec)   p_kst 9.265537e-05   p_cons 8.673508e-01   p_joint 3.706215e-04

Joint ci ratio: 1.526732e-01	ci left: 3.419584e-04	ci right 3.990136e-04	k: 658	n:1780000
Cons ci ratio: 1.148852e-03	ci left: 8.668874e-01	ci right 8.678844e-01	k: 1543948	n:1780000
KS ci ratio: 3.042367e-01	ci left: 7.909260e-05	ci right 1.079687e-04	k: 165	n:1780000
PCDHA10   1780000 perm   1610 sec   (1105 perm/sec)   p_kst 9.269663e-05   p_cons 8.673865e-01   p_joint 3.696629e-04

Joint ci ratio: 1.559017e-01	ci left: 3.255463e-04	ci right 3.811191e-04	k: 631	n:1790000
Cons ci ratio: 1.145735e-03	ci left: 8.668693e-01	ci right 8.678636e-01	k: 1552587	n:1790000
KS ci ratio: 3.033245e-01	ci left: 7.916683e-05	ci right 1.079666e-04	k: 166	n:1790000
PCDHA10   1790000 perm   1626 sec   (1101 perm/sec)   p_kst 9.273743e-05   p_cons 8.673670e-01   p_joint 3.525140e-04

Joint ci ratio: 1.556556e-01	ci left: 3.248055e-04	ci right 3.801562e-04	k: 633	n:1800000
Cons ci ratio: 1.142580e-03	ci left: 8.668642e-01	ci right 8.678557e-01	k: 1561249	n:1800000
KS ci ratio: 3.033246e-01	ci left: 7.872701e-05	ci right 1.073668e-04	k: 166	n:1800000
PCDHA10   1800000 perm   1642 sec   (1096 perm/sec)   p_kst 9.222222e-05   p_cons 8.673606e-01   p_joint 3.516667e-04

Joint ci ratio: 1.550454e-01	ci left: 3.256660e-04	ci right 3.809256e-04	k: 638	n:1810000
Cons ci ratio: 1.139523e-03	ci left: 8.668447e-01	ci right 8.678336e-01	k: 1569885	n:1810000
KS ci ratio: 3.033246e-01	ci left: 7.829205e-05	ci right 1.067737e-04	k: 166	n:1810000
PCDHA10   1810000 perm   1658 sec   (1092 perm/sec)   p_kst 9.171271e-05   p_cons 8.673398e-01   p_joint 3.524862e-04

Joint ci ratio: 1.545624e-01	ci left: 3.259893e-04	ci right 3.811154e-04	k: 642	n:1820000
Cons ci ratio: 1.136313e-03	ci left: 8.668613e-01	ci right 8.678474e-01	k: 1578586	n:1820000
KS ci ratio: 3.024205e-01	ci left: 7.836958e-05	ci right 1.067781e-04	k: 167	n:1820000
PCDHA10   1820000 perm   1674 sec   (1087 perm/sec)   p_kst 9.175824e-05   p_cons 8.673549e-01   p_joint 3.527473e-04

Joint ci ratio: 1.539648e-01	ci left: 3.268348e-04	ci right 3.818705e-04	k: 647	n:1830000
Cons ci ratio: 1.133195e-03	ci left: 8.668645e-01	ci right 8.678480e-01	k: 1587263	n:1830000
KS ci ratio: 3.006362e-01	ci left: 7.895156e-05	ci right 1.073699e-04	k: 169	n:1830000
PCDHA10   1830000 perm   1690 sec   (1083 perm/sec)   p_kst 9.234973e-05   p_cons 8.673568e-01   p_joint 3.535519e-04

Joint ci ratio: 1.537278e-01	ci left: 3.261036e-04	ci right 3.809239e-04	k: 649	n:1840000
Cons ci ratio: 1.130032e-03	ci left: 8.668819e-01	ci right 8.678626e-01	k: 1595966	n:1840000
KS ci ratio: 3.006363e-01	ci left: 7.852247e-05	ci right 1.067864e-04	k: 169	n:1840000
PCDHA10   1840000 perm   1707 sec   (1078 perm/sec)   p_kst 9.184783e-05   p_cons 8.673728e-01   p_joint 3.527174e-04

Joint ci ratio: 1.534920e-01	ci left: 3.253804e-04	ci right 3.799874e-04	k: 651	n:1850000
Cons ci ratio: 1.126910e-03	ci left: 8.668964e-01	ci right 8.678744e-01	k: 1604664	n:1850000
KS ci ratio: 3.006364e-01	ci left: 7.809803e-05	ci right 1.062091e-04	k: 169	n:1850000
PCDHA10   1850000 perm   1723 sec   (1074 perm/sec)   p_kst 9.135135e-05   p_cons 8.673859e-01   p_joint 3.518919e-04

Joint ci ratio: 1.586901e-01	ci left: 3.019318e-04	ci right 3.544832e-04	k: 609	n:1860000
Cons ci ratio: 1.123834e-03	ci left: 8.669064e-01	ci right 8.678817e-01	k: 1613354	n:1860000
KS ci ratio: 2.997560e-01	ci left: 7.817529e-05	ci right 1.062161e-04	k: 170	n:1860000
PCDHA10   1860000 perm   1739 sec   (1069 perm/sec)   p_kst 9.139785e-05   p_cons 8.673946e-01   p_joint 3.274194e-04

Joint ci ratio: 1.581723e-01	ci left: 3.023714e-04	ci right 3.548113e-04	k: 613	n:1870000
Cons ci ratio: 1.120726e-03	ci left: 8.669281e-01	ci right 8.679007e-01	k: 1622066	n:1870000
KS ci ratio: 2.980182e-01	ci left: 7.874658e-05	ci right 1.067976e-04	k: 172	n:1870000
PCDHA10   1870000 perm   1756 sec   (1065 perm/sec)   p_kst 9.197861e-05   p_cons 8.674150e-01   p_joint 3.278075e-04

Joint ci ratio: 1.580438e-01	ci left: 3.012739e-04	ci right 3.534770e-04	k: 614	n:1880000
Cons ci ratio: 1.117739e-03	ci left: 8.669298e-01	ci right 8.678999e-01	k: 1630741	n:1880000
KS ci ratio: 2.963103e-01	ci left: 7.931225e-05	ci right 1.073724e-04	k: 174	n:1880000
PCDHA10   1880000 perm   1772 sec   (1061 perm/sec)   p_kst 9.255319e-05   p_cons 8.674154e-01   p_joint 3.265957e-04

Joint ci ratio: 1.580439e-01	ci left: 2.996799e-04	ci right 3.516067e-04	k: 614	n:1890000
Cons ci ratio: 1.114874e-03	ci left: 8.669114e-01	ci right 8.678790e-01	k: 1639378	n:1890000
KS ci ratio: 2.963103e-01	ci left: 7.889261e-05	ci right 1.068043e-04	k: 174	n:1890000
PCDHA10   1890000 perm   1789 sec   (1056 perm/sec)   p_kst 9.206349e-05   p_cons 8.673958e-01   p_joint 3.248677e-04

Joint ci ratio: 1.577876e-01	ci left: 2.991136e-04	ci right 3.508504e-04	k: 616	n:1900000
Cons ci ratio: 1.111925e-03	ci left: 8.669148e-01	ci right 8.678798e-01	k: 1648056	n:1900000
KS ci ratio: 2.954674e-01	ci left: 7.896464e-05	ci right 1.068075e-04	k: 175	n:1900000
PCDHA10   1900000 perm   1806 sec   (1052 perm/sec)   p_kst 9.210526e-05   p_cons 8.673979e-01   p_joint 3.242105e-04

Joint ci ratio: 1.572786e-01	ci left: 2.995593e-04	ci right 3.511902e-04	k: 620	n:1910000
Cons ci ratio: 1.109049e-03	ci left: 8.669083e-01	ci right 8.678707e-01	k: 1656715	n:1910000
KS ci ratio: 2.938027e-01	ci left: 7.952095e-05	ci right 1.073725e-04	k: 177	n:1910000
PCDHA10   1910000 perm   1822 sec   (1048 perm/sec)   p_kst 9.267016e-05   p_cons 8.673901e-01   p_joint 3.246073e-04

Joint ci ratio: 1.565241e-01	ci left: 3.010014e-04	ci right 3.526087e-04	k: 626	n:1920000
Cons ci ratio: 1.106114e-03	ci left: 8.669184e-01	ci right 8.678784e-01	k: 1665406	n:1920000
KS ci ratio: 2.921658e-01	ci left: 8.007190e-05	ci right 1.079313e-04	k: 179	n:1920000
PCDHA10   1920000 perm   1839 sec   (1044 perm/sec)   p_kst 9.322917e-05   p_cons 8.673990e-01   p_joint 3.260417e-04

Joint ci ratio: 1.557804e-01	ci left: 3.024292e-04	ci right 3.540118e-04	k: 632	n:1930000
Cons ci ratio: 1.103160e-03	ci left: 8.669373e-01	ci right 8.678947e-01	k: 1674114	n:1930000
KS ci ratio: 2.913576e-01	ci left: 8.013724e-05	ci right 1.079280e-04	k: 180	n:1930000
PCDHA10   1930000 perm   1856 sec   (1040 perm/sec)   p_kst 9.326425e-05   p_cons 8.674166e-01   p_joint 3.274611e-04

Joint ci ratio: 1.555350e-01	ci left: 3.018610e-04	ci right 3.532581e-04	k: 634	n:1940000
Cons ci ratio: 1.100319e-03	ci left: 8.669375e-01	ci right 8.678924e-01	k: 1682786	n:1940000
KS ci ratio: 2.905560e-01	ci left: 8.020201e-05	ci right 1.079247e-04	k: 181	n:1940000
PCDHA10   1940000 perm   1873 sec   (1036 perm/sec)   p_kst 9.329897e-05   p_cons 8.674155e-01   p_joint 3.268041e-04

Joint ci ratio: 1.555351e-01	ci left: 3.003130e-04	ci right 3.514465e-04	k: 634	n:1950000
Cons ci ratio: 1.097450e-03	ci left: 8.669478e-01	ci right 8.679003e-01	k: 1691478	n:1950000
KS ci ratio: 2.889725e-01	ci left: 8.074183e-05	ci right 1.084712e-04	k: 183	n:1950000
PCDHA10   1950000 perm   1890 sec   (1032 perm/sec)   p_kst 9.384615e-05   p_cons 8.674246e-01   p_joint 3.251282e-04

Joint ci ratio: 1.546847e-01	ci left: 3.022136e-04	ci right 3.533633e-04	k: 641	n:1960000
Cons ci ratio: 1.094640e-03	ci left: 8.669505e-01	ci right 8.679005e-01	k: 1700155	n:1960000
KS ci ratio: 2.874146e-01	ci left: 8.127654e-05	ci right 1.090117e-04	k: 185	n:1960000
PCDHA10   1960000 perm   1907 sec   (1028 perm/sec)   p_kst 9.438776e-05   p_cons 8.674260e-01   p_joint 3.270408e-04

Joint ci ratio: 1.544444e-01	ci left: 3.016555e-04	ci right 3.526241e-04	k: 643	n:1970000
Cons ci ratio: 1.091900e-03	ci left: 8.669429e-01	ci right 8.678905e-01	k: 1708812	n:1970000
KS ci ratio: 2.866451e-01	ci left: 8.133505e-05	ci right 1.090024e-04	k: 186	n:1970000
PCDHA10   1970000 perm   1924 sec   (1024 perm/sec)   p_kst 9.441624e-05   p_cons 8.674173e-01   p_joint 3.263959e-04

Joint ci ratio: 1.548056e-01	ci left: 2.986754e-04	ci right 3.492695e-04	k: 640	n:1980000
Cons ci ratio: 1.089276e-03	ci left: 8.669152e-01	ci right 8.678605e-01	k: 1717429	n:1980000
KS ci ratio: 2.866452e-01	ci left: 8.092426e-05	ci right 1.084519e-04	k: 186	n:1980000
PCDHA10   1980000 perm   1942 sec   (1020 perm/sec)   p_kst 9.393939e-05   p_cons 8.673884e-01   p_joint 3.232323e-04

Joint ci ratio: 1.542053e-01	ci left: 2.995900e-04	ci right 3.501240e-04	k: 645	n:1990000
Cons ci ratio: 1.086504e-03	ci left: 8.669230e-01	ci right 8.678659e-01	k: 1726116	n:1990000
KS ci ratio: 2.851244e-01	ci left: 8.145058e-05	ci right 1.089838e-04	k: 188	n:1990000
PCDHA10   1990000 perm   1959 sec   (1016 perm/sec)   p_kst 9.447236e-05   p_cons 8.673950e-01   p_joint 3.241206e-04

Joint ci ratio: 1.543249e-01	ci left: 2.976113e-04	ci right 3.478541e-04	k: 644	n:2000000
Cons ci ratio: 1.083754e-03	ci left: 8.669307e-01	ci right 8.678712e-01	k: 1734803	n:2000000
KS ci ratio: 2.851245e-01	ci left: 8.104333e-05	ci right 1.084389e-04	k: 188	n:2000000
PCDHA10   2000000 perm   1976 sec   (1012 perm/sec)   p_kst 9.400000e-05   p_cons 8.674015e-01   p_joint 3.220000e-04

Joint ci ratio: 1.540863e-01	ci left: 2.970873e-04	ci right 3.471569e-04	k: 646	n:2010000
Cons ci ratio: 1.080991e-03	ci left: 8.669453e-01	ci right 8.678835e-01	k: 1743504	n:2010000
KS ci ratio: 2.851246e-01	ci left: 8.064012e-05	ci right 1.078994e-04	k: 188	n:2010000
PCDHA10   2010000 perm   1993 sec   (1008 perm/sec)   p_kst 9.353234e-05   p_cons 8.674149e-01   p_joint 3.213930e-04

Joint ci ratio: 1.538487e-01	ci left: 2.965685e-04	ci right 3.464665e-04	k: 648	n:2020000
Cons ci ratio: 1.078287e-03	ci left: 8.669519e-01	ci right 8.678877e-01	k: 1752189	n:2020000
KS ci ratio: 2.843732e-01	ci left: 8.070062e-05	ci right 1.078955e-04	k: 189	n:2020000
PCDHA10   2020000 perm   2011 sec   (1004 perm/sec)   p_kst 9.356436e-05   p_cons 8.674203e-01   p_joint 3.207921e-04

Joint ci ratio: 1.536122e-01	ci left: 2.960549e-04	ci right 3.457829e-04	k: 650	n:2030000
Cons ci ratio: 1.075536e-03	ci left: 8.669727e-01	ci right 8.679061e-01	k: 1760903	n:2030000
KS ci ratio: 2.836278e-01	ci left: 8.076061e-05	ci right 1.078916e-04	k: 190	n:2030000
PCDHA10   2030000 perm   2029 sec   (1001 perm/sec)   p_kst 9.359606e-05   p_cons 8.674399e-01   p_joint 3.201970e-04

Joint ci ratio: 1.532595e-01	ci left: 2.960178e-04	ci right 3.456149e-04	k: 653	n:2040000
Cons ci ratio: 1.072761e-03	ci left: 8.670031e-01	ci right 8.679341e-01	k: 1769637	n:2040000
KS ci ratio: 2.828882e-01	ci left: 8.082010e-05	ci right 1.078877e-04	k: 191	n:2040000
PCDHA10   2040000 perm   2046 sec   (997 perm/sec)   p_kst 9.362745e-05   p_cons 8.674691e-01   p_joint 3.200980e-04

Joint ci ratio: 1.527929e-01	ci left: 2.964503e-04	ci right 3.459548e-04	k: 657	n:2050000
Cons ci ratio: 1.070149e-03	ci left: 8.670024e-01	ci right 8.679312e-01	k: 1778308	n:2050000
KS ci ratio: 2.821544e-01	ci left: 8.087910e-05	ci right 1.078837e-04	k: 192	n:2050000
PCDHA10   2050000 perm   2064 sec   (993 perm/sec)   p_kst 9.365854e-05   p_cons 8.674673e-01   p_joint 3.204878e-04

Joint ci ratio: 1.524458e-01	ci left: 2.964119e-04	ci right 3.457873e-04	k: 660	n:2060000
Cons ci ratio: 1.067580e-03	ci left: 8.669969e-01	ci right 8.679234e-01	k: 1786969	n:2060000
KS ci ratio: 2.814263e-01	ci left: 8.093762e-05	ci right 1.078796e-04	k: 193	n:2060000
PCDHA10   2060000 perm   2082 sec   (989 perm/sec)   p_kst 9.368932e-05   p_cons 8.674607e-01   p_joint 3.203883e-04

Joint ci ratio: 1.522158e-01	ci left: 2.959093e-04	ci right 3.451198e-04	k: 662	n:2070000
Cons ci ratio: 1.064977e-03	ci left: 8.670026e-01	ci right 8.679269e-01	k: 1795653	n:2070000
KS ci ratio: 2.807037e-01	ci left: 8.099566e-05	ci right 1.078755e-04	k: 194	n:2070000
PCDHA10   2070000 perm   2100 sec   (986 perm/sec)   p_kst 9.371981e-05   p_cons 8.674652e-01   p_joint 3.198068e-04

Joint ci ratio: 1.519867e-01	ci left: 2.954116e-04	ci right 3.444587e-04	k: 664	n:2080000
Cons ci ratio: 1.062440e-03	ci left: 8.669981e-01	ci right 8.679201e-01	k: 1804316	n:2080000
KS ci ratio: 2.799867e-01	ci left: 8.105323e-05	ci right 1.078714e-04	k: 195	n:2080000
PCDHA10   2080000 perm   2118 sec   (982 perm/sec)   p_kst 9.375000e-05   p_cons 8.674596e-01   p_joint 3.192308e-04

Joint ci ratio: 1.517587e-01	ci left: 2.949187e-04	ci right 3.438039e-04	k: 666	n:2090000
Cons ci ratio: 1.059896e-03	ci left: 8.669989e-01	ci right 8.679188e-01	k: 1812990	n:2090000
KS ci ratio: 2.799868e-01	ci left: 8.066542e-05	ci right 1.073552e-04	k: 195	n:2090000
PCDHA10   2090000 perm   2136 sec   (978 perm/sec)   p_kst 9.330144e-05   p_cons 8.674593e-01   p_joint 3.186603e-04

Joint ci ratio: 1.515318e-01	ci left: 2.944306e-04	ci right 3.431552e-04	k: 668	n:2100000
Cons ci ratio: 1.057393e-03	ci left: 8.669949e-01	ci right 8.679126e-01	k: 1821654	n:2100000
KS ci ratio: 2.799869e-01	ci left: 8.028129e-05	ci right 1.068440e-04	k: 195	n:2100000
PCDHA10   2100000 perm   2154 sec   (975 perm/sec)   p_kst 9.285714e-05   p_cons 8.674543e-01   p_joint 3.180952e-04

Joint ci ratio: 1.511932e-01	ci left: 2.944031e-04	ci right 3.430045e-04	k: 671	n:2110000
Cons ci ratio: 1.054944e-03	ci left: 8.669829e-01	ci right 8.678985e-01	k: 1830301	n:2110000
KS ci ratio: 2.792753e-01	ci left: 8.034152e-05	ci right 1.068447e-04	k: 196	n:2110000
PCDHA10   2110000 perm   2173 sec   (971 perm/sec)   p_kst 9.289100e-05   p_cons 8.674412e-01   p_joint 3.180095e-04

Joint ci ratio: 1.509687e-01	ci left: 2.939222e-04	ci right 3.423656e-04	k: 673	n:2120000
Cons ci ratio: 1.052415e-03	ci left: 8.669923e-01	ci right 8.679057e-01	k: 1838993	n:2120000
KS ci ratio: 2.785692e-01	ci left: 8.040126e-05	ci right 1.068454e-04	k: 197	n:2120000
PCDHA10   2120000 perm   2191 sec   (968 perm/sec)   p_kst 9.292453e-05   p_cons 8.674495e-01   p_joint 3.174528e-04

Joint ci ratio: 1.538500e-01	ci left: 2.812526e-04	ci right 3.285741e-04	k: 648	n:2130000
Cons ci ratio: 1.049865e-03	ci left: 8.670101e-01	ci right 8.679213e-01	k: 1847703	n:2130000
KS ci ratio: 2.771728e-01	ci left: 8.089734e-05	ci right 1.073480e-04	k: 199	n:2130000
PCDHA10   2130000 perm   2209 sec   (964 perm/sec)   p_kst 9.342723e-05   p_cons 8.674662e-01   p_joint 3.042254e-04

Joint ci ratio: 1.572813e-01	ci left: 2.673633e-04	ci right 3.134459e-04	k: 620	n:2140000
Cons ci ratio: 1.047454e-03	ci left: 8.670015e-01	ci right 8.679106e-01	k: 1856357	n:2140000
KS ci ratio: 2.757972e-01	ci left: 8.138911e-05	ci right 1.078455e-04	k: 201	n:2140000
PCDHA10   2140000 perm   2228 sec   (960 perm/sec)   p_kst 9.392523e-05   p_cons 8.674565e-01   p_joint 2.897196e-04

Joint ci ratio: 1.567772e-01	ci left: 2.679071e-04	ci right 3.139215e-04	k: 624	n:2150000
Cons ci ratio: 1.045008e-03	ci left: 8.670042e-01	ci right 8.679111e-01	k: 1865035	n:2150000
KS ci ratio: 2.751170e-01	ci left: 8.144355e-05	ci right 1.078411e-04	k: 202	n:2150000
PCDHA10   2150000 perm   2247 sec   (957 perm/sec)   p_kst 9.395349e-05   p_cons 8.674581e-01   p_joint 2.902326e-04

Joint ci ratio: 1.566520e-01	ci left: 2.671116e-04	ci right 3.129493e-04	k: 625	n:2160000
Cons ci ratio: 1.042753e-03	ci left: 8.669683e-01	ci right 8.678733e-01	k: 1873630	n:2160000
KS ci ratio: 2.751171e-01	ci left: 8.106650e-05	ci right 1.073418e-04	k: 202	n:2160000
PCDHA10   2160000 perm   2265 sec   (953 perm/sec)   p_kst 9.351852e-05   p_cons 8.674213e-01   p_joint 2.893519e-04

Joint ci ratio: 1.580472e-01	ci left: 2.610111e-04	ci right 3.062387e-04	k: 614	n:2170000
Cons ci ratio: 1.040352e-03	ci left: 8.669684e-01	ci right 8.678712e-01	k: 1882302	n:2170000
KS ci ratio: 2.751171e-01	ci left: 8.069291e-05	ci right 1.068472e-04	k: 202	n:2170000
PCDHA10   2170000 perm   2284 sec   (950 perm/sec)   p_kst 9.308756e-05   p_cons 8.674203e-01   p_joint 2.829493e-04

Joint ci ratio: 1.577909e-01	ci left: 2.606950e-04	ci right 3.057876e-04	k: 616	n:2180000
Cons ci ratio: 1.037943e-03	ci left: 8.669739e-01	ci right 8.678747e-01	k: 1890986	n:2180000
KS ci ratio: 2.751172e-01	ci left: 8.032276e-05	ci right 1.063570e-04	k: 202	n:2180000
PCDHA10   2180000 perm   2303 sec   (947 perm/sec)   p_kst 9.266055e-05   p_cons 8.674248e-01   p_joint 2.825688e-04

Joint ci ratio: 1.577910e-01	ci left: 2.595046e-04	ci right 3.043913e-04	k: 616	n:2190000
Cons ci ratio: 1.035589e-03	ci left: 8.669707e-01	ci right 8.678694e-01	k: 1899651	n:2190000
KS ci ratio: 2.751172e-01	ci left: 7.995599e-05	ci right 1.058714e-04	k: 202	n:2190000
PCDHA10   2190000 perm   2322 sec   (943 perm/sec)   p_kst 9.223744e-05   p_cons 8.674205e-01   p_joint 2.812785e-04

Joint ci ratio: 1.574088e-01	ci left: 2.596349e-04	ci right 3.044251e-04	k: 619	n:2200000
Cons ci ratio: 1.033236e-03	ci left: 8.669712e-01	ci right 8.678679e-01	k: 1908324	n:2200000
KS ci ratio: 2.744421e-01	ci left: 8.001578e-05	ci right 1.058760e-04	k: 203	n:2200000
PCDHA10   2200000 perm   2340 sec   (940 perm/sec)   p_kst 9.227273e-05   p_cons 8.674200e-01   p_joint 2.813636e-04

Joint ci ratio: 1.571555e-01	ci left: 2.593294e-04	ci right 3.039881e-04	k: 621	n:2210000
Cons ci ratio: 1.030938e-03	ci left: 8.669626e-01	ci right 8.678573e-01	k: 1916977	n:2210000
KS ci ratio: 2.744422e-01	ci left: 7.965372e-05	ci right 1.053969e-04	k: 203	n:2210000
PCDHA10   2210000 perm   2360 sec   (937 perm/sec)   p_kst 9.185520e-05   p_cons 8.674104e-01   p_joint 2.809955e-04

Joint ci ratio: 1.565276e-01	ci left: 2.603251e-04	ci right 3.049594e-04	k: 626	n:2220000
Cons ci ratio: 1.028664e-03	ci left: 8.669523e-01	ci right 8.678450e-01	k: 1925626	n:2220000
KS ci ratio: 2.724461e-01	ci left: 8.055364e-05	ci right 1.063659e-04	k: 206	n:2220000
PCDHA10   2220000 perm   2379 sec   (933 perm/sec)   p_kst 9.279279e-05   p_cons 8.673991e-01   p_joint 2.819820e-04

Joint ci ratio: 1.564030e-01	ci left: 2.595886e-04	ci right 3.040578e-04	k: 627	n:2230000
Cons ci ratio: 1.026349e-03	ci left: 8.669546e-01	ci right 8.678453e-01	k: 1934303	n:2230000
KS ci ratio: 2.717904e-01	ci left: 8.061025e-05	ci right 1.063679e-04	k: 207	n:2230000
PCDHA10   2230000 perm   2398 sec   (930 perm/sec)   p_kst 9.282511e-05   p_cons 8.674004e-01   p_joint 2.811659e-04

Joint ci ratio: 1.561545e-01	ci left: 2.592877e-04	ci right 3.036282e-04	k: 629	n:2240000
Cons ci ratio: 1.024070e-03	ci left: 8.669525e-01	ci right 8.678412e-01	k: 1942970	n:2240000
KS ci ratio: 2.717904e-01	ci left: 8.025038e-05	ci right 1.058930e-04	k: 207	n:2240000
PCDHA10   2240000 perm   2417 sec   (927 perm/sec)   p_kst 9.241071e-05   p_cons 8.673973e-01   p_joint 2.808036e-04

Joint ci ratio: 1.562788e-01	ci left: 2.577082e-04	ci right 3.018169e-04	k: 628	n:2250000
Cons ci ratio: 1.021856e-03	ci left: 8.669388e-01	ci right 8.678256e-01	k: 1951611	n:2250000
KS ci ratio: 2.704930e-01	ci left: 8.072218e-05	ci right 1.063715e-04	k: 209	n:2250000
PCDHA10   2250000 perm   2436 sec   (924 perm/sec)   p_kst 9.288889e-05   p_cons 8.673827e-01   p_joint 2.791111e-04

Joint ci ratio: 1.559074e-01	ci left: 2.578435e-04	ci right 3.018607e-04	k: 631	n:2260000
Cons ci ratio: 1.019671e-03	ci left: 8.669221e-01	ci right 8.678070e-01	k: 1960245	n:2260000
KS ci ratio: 2.704931e-01	ci left: 8.036500e-05	ci right 1.059009e-04	k: 209	n:2260000
PCDHA10   2260000 perm   2455 sec   (920 perm/sec)   p_kst 9.247788e-05   p_cons 8.673650e-01   p_joint 2.792035e-04

Joint ci ratio: 1.330280e-01	ci left: 3.569392e-04	ci right 4.082261e-04	k: 867	n:2270000
Cons ci ratio: 1.017416e-03	ci left: 8.669246e-01	ci right 8.678075e-01	k: 1968922	n:2270000
KS ci ratio: 2.692141e-01	ci left: 8.083243e-05	ci right 1.063749e-04	k: 211	n:2270000
PCDHA10   2270000 perm   2475 sec   (917 perm/sec)   p_kst 9.295154e-05   p_cons 8.673665e-01   p_joint 3.819383e-04

Joint ci ratio: 1.339577e-01	ci left: 3.502862e-04	ci right 4.009969e-04	k: 855	n:2280000
Cons ci ratio: 1.015159e-03	ci left: 8.669310e-01	ci right 8.678119e-01	k: 1977608	n:2280000
KS ci ratio: 2.685814e-01	ci left: 8.088693e-05	ci right 1.063764e-04	k: 212	n:2280000
PCDHA10   2280000 perm   2494 sec   (914 perm/sec)   p_kst 9.298246e-05   p_cons 8.673719e-01   p_joint 3.750000e-04

Joint ci ratio: 1.352280e-01	ci left: 3.420048e-04	ci right 3.920239e-04	k: 839	n:2290000
Cons ci ratio: 1.013109e-03	ci left: 8.668936e-01	ci right 8.677727e-01	k: 1986194	n:2290000
KS ci ratio: 2.685814e-01	ci left: 8.053371e-05	ci right 1.059119e-04	k: 212	n:2290000
PCDHA10   2290000 perm   2514 sec   (911 perm/sec)   p_kst 9.257642e-05   p_cons 8.673336e-01   p_joint 3.663755e-04

Joint ci ratio: 1.348273e-01	ci left: 3.426183e-04	ci right 3.925668e-04	k: 844	n:2300000
Cons ci ratio: 1.010805e-03	ci left: 8.669171e-01	ci right 8.677942e-01	k: 1994919	n:2300000
KS ci ratio: 2.679532e-01	ci left: 8.058911e-05	ci right 1.059153e-04	k: 213	n:2300000
PCDHA10   2300000 perm   2533 sec   (908 perm/sec)   p_kst 9.260870e-05   p_cons 8.673561e-01   p_joint 3.669565e-04

Joint ci ratio: 1.345886e-01	ci left: 3.423901e-04	ci right 3.922098e-04	k: 847	n:2310000
Cons ci ratio: 1.008568e-03	ci left: 8.669286e-01	ci right 8.678038e-01	k: 2003617	n:2310000
KS ci ratio: 2.673293e-01	ci left: 8.064409e-05	ci right 1.059187e-04	k: 214	n:2310000
PCDHA10   2310000 perm   2553 sec   (905 perm/sec)   p_kst 9.264069e-05   p_cons 8.673667e-01   p_joint 3.666667e-04

Joint ci ratio: 1.341149e-01	ci left: 3.434135e-04	ci right 3.931923e-04	k: 853	n:2320000
Cons ci ratio: 1.006390e-03	ci left: 8.669301e-01	ci right 8.678034e-01	k: 2012292	n:2320000
KS ci ratio: 2.673293e-01	ci left: 8.029649e-05	ci right 1.054622e-04	k: 214	n:2320000
PCDHA10   2320000 perm   2573 sec   (902 perm/sec)   p_kst 9.224138e-05   p_cons 8.673672e-01   p_joint 3.676724e-04

Joint ci ratio: 1.338019e-01	ci left: 3.435989e-04	ci right 3.932790e-04	k: 857	n:2330000
Cons ci ratio: 1.004246e-03	ci left: 8.669269e-01	ci right 8.677984e-01	k: 2020956	n:2330000
KS ci ratio: 2.673294e-01	ci left: 7.995186e-05	ci right 1.050095e-04	k: 214	n:2330000
PCDHA10   2330000 perm   2593 sec   (899 perm/sec)   p_kst 9.184549e-05   p_cons 8.673631e-01   p_joint 3.678112e-04

Joint ci ratio: 1.341151e-01	ci left: 3.404784e-04	ci right 3.898317e-04	k: 853	n:2340000
Cons ci ratio: 1.002188e-03	ci left: 8.669070e-01	ci right 8.677767e-01	k: 2029581	n:2340000
KS ci ratio: 2.660945e-01	ci left: 8.040775e-05	ci right 1.054725e-04	k: 216	n:2340000
PCDHA10   2340000 perm   2613 sec   (896 perm/sec)   p_kst 9.230769e-05   p_cons 8.673423e-01   p_joint 3.645299e-04

Joint ci ratio: 1.339584e-01	ci left: 3.398520e-04	ci right 3.890525e-04	k: 855	n:2350000
Cons ci ratio: 1.000003e-03	ci left: 8.669197e-01	ci right 8.677875e-01	k: 2038282	n:2350000
KS ci ratio: 2.660946e-01	ci left: 8.006559e-05	ci right 1.050237e-04	k: 216	n:2350000
PCDHA10   2350000 perm   2633 sec   (893 perm/sec)   p_kst 9.191489e-05   p_cons 8.673540e-01   p_joint 3.638298e-04

Joint ci ratio: 1.341153e-01	ci left: 3.375929e-04	ci right 3.865281e-04	k: 853	n:2360000
Cons ci ratio: 9.978591e-04	ci left: 8.669259e-01	ci right 8.677918e-01	k: 2046968	n:2360000
KS ci ratio: 2.654836e-01	ci left: 8.012183e-05	ci right 1.050306e-04	k: 217	n:2360000
PCDHA10   2360000 perm   2653 sec   (890 perm/sec)   p_kst 9.194915e-05   p_cons 8.673593e-01   p_joint 3.614407e-04

Joint ci ratio: 1.336466e-01	ci left: 3.386153e-04	ci right 3.875136e-04	k: 859	n:2370000
Cons ci ratio: 9.957601e-04	ci left: 8.669249e-01	ci right 8.677890e-01	k: 2055637	n:2370000
KS ci ratio: 2.654836e-01	ci left: 7.978376e-05	ci right 1.045874e-04	k: 217	n:2370000
PCDHA10   2370000 perm   2673 sec   (887 perm/sec)   p_kst 9.156118e-05   p_cons 8.673574e-01   p_joint 3.624473e-04

Joint ci ratio: 1.385696e-01	ci left: 3.128403e-04	ci right 3.598180e-04	k: 799	n:2380000
Cons ci ratio: 9.936543e-04	ci left: 8.669285e-01	ci right 8.677908e-01	k: 2064317	n:2380000
KS ci ratio: 2.648768e-01	ci left: 7.984077e-05	ci right 1.045960e-04	k: 218	n:2380000
PCDHA10   2380000 perm   2694 sec   (884 perm/sec)   p_kst 9.159664e-05   p_cons 8.673601e-01   p_joint 3.357143e-04

Joint ci ratio: 1.381385e-01	ci left: 3.135510e-04	ci right 3.604769e-04	k: 804	n:2390000
Cons ci ratio: 9.915672e-04	ci left: 8.669308e-01	ci right 8.677913e-01	k: 2072994	n:2390000
KS ci ratio: 2.642741e-01	ci left: 7.989737e-05	ci right 1.046044e-04	k: 219	n:2390000
PCDHA10   2390000 perm   2714 sec   (881 perm/sec)   p_kst 9.163180e-05   p_cons 8.673615e-01   p_joint 3.364017e-04

Joint ci ratio: 1.377115e-01	ci left: 3.142560e-04	ci right 3.611301e-04	k: 809	n:2400000
Cons ci ratio: 9.895774e-04	ci left: 8.669135e-01	ci right 8.677722e-01	k: 2081624	n:2400000
KS ci ratio: 2.636755e-01	ci left: 7.995356e-05	ci right 1.046128e-04	k: 220	n:2400000
PCDHA10   2400000 perm   2735 sec   (878 perm/sec)   p_kst 9.166667e-05   p_cons 8.673433e-01   p_joint 3.370833e-04

Joint ci ratio: 1.381387e-01	ci left: 3.109489e-04	ci right 3.574854e-04	k: 804	n:2410000
Cons ci ratio: 9.875497e-04	ci left: 8.669080e-01	ci right 8.677650e-01	k: 2090282	n:2410000
KS ci ratio: 2.636756e-01	ci left: 7.962180e-05	ci right 1.041787e-04	k: 220	n:2410000
PCDHA10   2410000 perm   2755 sec   (875 perm/sec)   p_kst 9.128631e-05   p_cons 8.673369e-01   p_joint 3.336100e-04

Joint ci ratio: 1.379675e-01	ci left: 3.104619e-04	ci right 3.568632e-04	k: 806	n:2420000
Cons ci ratio: 9.855220e-04	ci left: 8.669054e-01	ci right 8.677606e-01	k: 2098947	n:2420000
KS ci ratio: 2.630811e-01	ci left: 7.967873e-05	ci right 1.041886e-04	k: 221	n:2420000
PCDHA10   2420000 perm   2776 sec   (872 perm/sec)   p_kst 9.132231e-05   p_cons 8.673335e-01   p_joint 3.330579e-04

Joint ci ratio: 1.377969e-01	ci left: 3.099789e-04	ci right 3.562460e-04	k: 808	n:2430000
Cons ci ratio: 9.834628e-04	ci left: 8.669132e-01	ci right 8.677666e-01	k: 2107637	n:2430000
KS ci ratio: 2.619039e-01	ci left: 8.011973e-05	ci right 1.046369e-04	k: 223	n:2430000
PCDHA10   2430000 perm   2796 sec   (869 perm/sec)   p_kst 9.176955e-05   p_cons 8.673403e-01   p_joint 3.325103e-04

Joint ci ratio: 1.376269e-01	ci left: 3.095000e-04	ci right 3.556339e-04	k: 810	n:2440000
Cons ci ratio: 9.814671e-04	ci left: 8.669090e-01	ci right 8.677606e-01	k: 2116298	n:2440000
KS ci ratio: 2.607424e-01	ci left: 8.055736e-05	ci right 1.050813e-04	k: 225	n:2440000
PCDHA10   2440000 perm   2817 sec   (866 perm/sec)   p_kst 9.221311e-05   p_cons 8.673352e-01   p_joint 3.319672e-04

Joint ci ratio: 1.373731e-01	ci left: 3.094191e-04	ci right 3.554489e-04	k: 813	n:2450000
Cons ci ratio: 9.793897e-04	ci left: 8.669269e-01	ci right 8.677767e-01	k: 2125013	n:2450000
KS ci ratio: 2.607424e-01	ci left: 8.022855e-05	ci right 1.046524e-04	k: 225	n:2450000
PCDHA10   2450000 perm   2838 sec   (863 perm/sec)   p_kst 9.183673e-05   p_cons 8.673522e-01   p_joint 3.318367e-04

Joint ci ratio: 1.370368e-01	ci left: 3.097315e-04	ci right 3.556858e-04	k: 817	n:2460000
Cons ci ratio: 9.773237e-04	ci left: 8.669450e-01	ci right 8.677931e-01	k: 2133729	n:2460000
KS ci ratio: 2.601675e-01	ci left: 8.028238e-05	ci right 1.046600e-04	k: 226	n:2460000
PCDHA10   2460000 perm   2859 sec   (860 perm/sec)   p_kst 9.186992e-05   p_cons 8.673695e-01   p_joint 3.321138e-04

Joint ci ratio: 1.366198e-01	ci left: 3.104325e-04	ci right 3.563393e-04	k: 822	n:2470000
Cons ci ratio: 9.753994e-04	ci left: 8.669326e-01	ci right 8.677790e-01	k: 2142370	n:2470000
KS ci ratio: 2.595963e-01	ci left: 8.033584e-05	ci right 1.046675e-04	k: 227	n:2470000
PCDHA10   2470000 perm   2880 sec   (858 perm/sec)   p_kst 9.190283e-05   p_cons 8.673563e-01   p_joint 3.327935e-04

Joint ci ratio: 1.363715e-01	ci left: 3.103491e-04	ci right 3.561534e-04	k: 825	n:2480000
Cons ci ratio: 9.734250e-04	ci left: 8.669349e-01	ci right 8.677796e-01	k: 2151047	n:2480000
KS ci ratio: 2.590289e-01	ci left: 8.038893e-05	ci right 1.046748e-04	k: 228	n:2480000
PCDHA10   2480000 perm   2901 sec   (855 perm/sec)   p_kst 9.193548e-05   p_cons 8.673577e-01   p_joint 3.326613e-04

Joint ci ratio: 1.360425e-01	ci left: 3.106544e-04	ci right 3.563842e-04	k: 829	n:2490000
Cons ci ratio: 9.713540e-04	ci left: 8.669629e-01	ci right 8.678058e-01	k: 2159788	n:2490000
KS ci ratio: 2.573486e-01	ci left: 8.119294e-05	ci right 1.055370e-04	k: 231	n:2490000
PCDHA10   2490000 perm   2922 sec   (852 perm/sec)   p_kst 9.277108e-05   p_cons 8.673847e-01   p_joint 3.329317e-04

Joint ci ratio: 1.375427e-01	ci left: 3.024581e-04	ci right 3.475125e-04	k: 811	n:2500000
Cons ci ratio: 9.694142e-04	ci left: 8.669626e-01	ci right 8.678038e-01	k: 2168459	n:2500000
KS ci ratio: 2.573486e-01	ci left: 8.086817e-05	ci right 1.051149e-04	k: 231	n:2500000
PCDHA10   2500000 perm   2943 sec   (849 perm/sec)   p_kst 9.240000e-05   p_cons 8.673836e-01   p_joint 3.244000e-04

Joint ci ratio: 1.370372e-01	ci left: 3.035614e-04	ci right 3.486005e-04	k: 817	n:2510000
Cons ci ratio: 9.675144e-04	ci left: 8.669555e-01	ci right 8.677951e-01	k: 2177113	n:2510000
KS ci ratio: 2.562464e-01	ci left: 8.129151e-05	ci right 1.055441e-04	k: 233	n:2510000
PCDHA10   2510000 perm   2964 sec   (847 perm/sec)   p_kst 9.282869e-05   p_cons 8.673757e-01   p_joint 3.254980e-04

Joint ci ratio: 1.367866e-01	ci left: 3.035065e-04	ci right 3.484484e-04	k: 820	n:2520000
Cons ci ratio: 9.656374e-04	ci left: 8.669457e-01	ci right 8.677836e-01	k: 2185760	n:2520000
KS ci ratio: 2.557006e-01	ci left: 8.134030e-05	ci right 1.055475e-04	k: 234	n:2520000
PCDHA10   2520000 perm   2985 sec   (844 perm/sec)   p_kst 9.285714e-05   p_cons 8.673651e-01   p_joint 3.253968e-04

Joint ci ratio: 1.366204e-01	ci left: 3.030704e-04	ci right 3.478887e-04	k: 822	n:2530000
Cons ci ratio: 9.636934e-04	ci left: 8.669546e-01	ci right 8.677908e-01	k: 2194454	n:2530000
KS ci ratio: 2.551583e-01	ci left: 8.138875e-05	ci right 1.055508e-04	k: 235	n:2530000
PCDHA10   2530000 perm   3007 sec   (841 perm/sec)   p_kst 9.288538e-05   p_cons 8.673731e-01   p_joint 3.249012e-04

Joint ci ratio: 1.362895e-01	ci left: 3.033982e-04	ci right 3.481476e-04	k: 826	n:2540000
Cons ci ratio: 9.617710e-04	ci left: 8.669610e-01	ci right 8.677956e-01	k: 2203142	n:2540000
KS ci ratio: 2.535517e-01	ci left: 8.217414e-05	ci right 1.063915e-04	k: 238	n:2540000
PCDHA10   2540000 perm   3028 sec   (839 perm/sec)   p_kst 9.370079e-05   p_cons 8.673787e-01   p_joint 3.251969e-04

Joint ci ratio: 1.361251e-01	ci left: 3.029660e-04	ci right 3.475933e-04	k: 828	n:2550000
Cons ci ratio: 9.598830e-04	ci left: 8.669619e-01	ci right 8.677949e-01	k: 2211816	n:2550000
KS ci ratio: 2.535518e-01	ci left: 8.185189e-05	ci right 1.059743e-04	k: 238	n:2550000
PCDHA10   2550000 perm   3050 sec   (836 perm/sec)   p_kst 9.333333e-05   p_cons 8.673788e-01   p_joint 3.247059e-04

Joint ci ratio: 1.357978e-01	ci left: 3.032919e-04	ci right 3.478511e-04	k: 832	n:2560000
Cons ci ratio: 9.580028e-04	ci left: 8.669636e-01	ci right 8.677949e-01	k: 2220492	n:2560000
KS ci ratio: 2.535518e-01	ci left: 8.153215e-05	ci right 1.055603e-04	k: 238	n:2560000
PCDHA10   2560000 perm   3071 sec   (834 perm/sec)   p_kst 9.296875e-05   p_cons 8.673797e-01   p_joint 3.250000e-04

Joint ci ratio: 1.358795e-01	ci left: 3.017359e-04	ci right 3.460953e-04	k: 831	n:2570000
Cons ci ratio: 9.560915e-04	ci left: 8.669754e-01	ci right 8.678051e-01	k: 2229194	n:2570000
KS ci ratio: 2.530230e-01	ci left: 8.157931e-05	ci right 1.055633e-04	k: 239	n:2570000
PCDHA10   2570000 perm   3093 sec   (831 perm/sec)   p_kst 9.299611e-05   p_cons 8.673907e-01   p_joint 3.233463e-04

Joint ci ratio: 1.356352e-01	ci left: 3.016897e-04	ci right 3.459561e-04	k: 834	n:2580000
Cons ci ratio: 9.541997e-04	ci left: 8.669852e-01	ci right 8.678132e-01	k: 2237891	n:2580000
KS ci ratio: 2.530231e-01	ci left: 8.126311e-05	ci right 1.051542e-04	k: 239	n:2580000
PCDHA10   2580000 perm   3115 sec   (828 perm/sec)   p_kst 9.263566e-05   p_cons 8.673996e-01   p_joint 3.232558e-04

Joint ci ratio: 1.355541e-01	ci left: 3.008978e-04	ci right 3.450196e-04	k: 835	n:2590000
Cons ci ratio: 9.523542e-04	ci left: 8.669864e-01	ci right 8.678128e-01	k: 2246566	n:2590000
KS ci ratio: 2.524976e-01	ci left: 8.131100e-05	ci right 1.051587e-04	k: 240	n:2590000
PCDHA10   2590000 perm   3137 sec   (826 perm/sec)   p_kst 9.266409e-05   p_cons 8.674000e-01   p_joint 3.223938e-04

Joint ci ratio: 1.352310e-01	ci left: 3.012269e-04	ci right 3.452831e-04	k: 839	n:2600000
Cons ci ratio: 9.504797e-04	ci left: 8.669972e-01	ci right 8.678220e-01	k: 2255266	n:2600000
KS ci ratio: 2.519754e-01	ci left: 8.135857e-05	ci right 1.051631e-04	k: 241	n:2600000
PCDHA10   2600000 perm   3158 sec   (823 perm/sec)   p_kst 9.269231e-05   p_cons 8.674100e-01   p_joint 3.226923e-04

Joint ci ratio: 1.348302e-01	ci left: 3.019238e-04	ci right 3.459406e-04	k: 844	n:2610000
Cons ci ratio: 9.487758e-04	ci left: 8.669692e-01	ci right 8.677925e-01	k: 2263865	n:2610000
KS ci ratio: 2.509405e-01	ci left: 8.176485e-05	ci right 1.055746e-04	k: 243	n:2610000
PCDHA10   2610000 perm   3180 sec   (821 perm/sec)   p_kst 9.310345e-05   p_cons 8.673812e-01   p_joint 3.233716e-04

Joint ci ratio: 1.345122e-01	ci left: 3.022467e-04	ci right 3.461983e-04	k: 848	n:2620000
Cons ci ratio: 9.469631e-04	ci left: 8.669700e-01	ci right 8.677918e-01	k: 2272539	n:2620000
KS ci ratio: 2.509406e-01	ci left: 8.145276e-05	ci right 1.051717e-04	k: 243	n:2620000
PCDHA10   2620000 perm   3202 sec   (818 perm/sec)   p_kst 9.274809e-05   p_cons 8.673813e-01   p_joint 3.236641e-04

Joint ci ratio: 1.342752e-01	ci left: 3.021998e-04	ci right 3.460610e-04	k: 851	n:2630000
Cons ci ratio: 9.451452e-04	ci left: 8.669747e-01	ci right 8.677949e-01	k: 2281223	n:2630000
KS ci ratio: 2.509406e-01	ci left: 8.114306e-05	ci right 1.047718e-04	k: 243	n:2630000
PCDHA10   2630000 perm   3224 sec   (816 perm/sec)   p_kst 9.239544e-05   p_cons 8.673852e-01   p_joint 3.235741e-04

Joint ci ratio: 1.341179e-01	ci left: 3.017872e-04	ci right 3.455332e-04	k: 853	n:2640000
Cons ci ratio: 9.433874e-04	ci left: 8.669672e-01	ci right 8.677858e-01	k: 2289875	n:2640000
KS ci ratio: 2.509406e-01	ci left: 8.083570e-05	ci right 1.043749e-04	k: 243	n:2640000
PCDHA10   2640000 perm   3247 sec   (813 perm/sec)   p_kst 9.204545e-05   p_cons 8.673769e-01   p_joint 3.231061e-04

Joint ci ratio: 1.343543e-01	ci left: 2.995543e-04	ci right 3.430592e-04	k: 850	n:2650000
Cons ci ratio: 9.416440e-04	ci left: 8.669586e-01	ci right 8.677757e-01	k: 2298524	n:2650000
KS ci ratio: 2.499184e-01	ci left: 8.123801e-05	ci right 1.047830e-04	k: 245	n:2650000
PCDHA10   2650000 perm   3269 sec   (811 perm/sec)   p_kst 9.245283e-05   p_cons 8.673675e-01   p_joint 3.207547e-04

Joint ci ratio: 1.343543e-01	ci left: 2.984282e-04	ci right 3.417695e-04	k: 850	n:2660000
Cons ci ratio: 9.398917e-04	ci left: 8.669546e-01	ci right 8.677702e-01	k: 2307185	n:2660000
KS ci ratio: 2.499185e-01	ci left: 8.093260e-05	ci right 1.043891e-04	k: 245	n:2660000
PCDHA10   2660000 perm   3292 sec   (808 perm/sec)   p_kst 9.210526e-05   p_cons 8.673628e-01   p_joint 3.195489e-04

Joint ci ratio: 1.343544e-01	ci left: 2.973104e-04	ci right 3.404895e-04	k: 850	n:2670000
Cons ci ratio: 9.381386e-04	ci left: 8.669532e-01	ci right 8.677673e-01	k: 2315853	n:2670000
KS ci ratio: 2.489086e-01	ci left: 8.133173e-05	ci right 1.047939e-04	k: 247	n:2670000
PCDHA10   2670000 perm   3314 sec   (806 perm/sec)   p_kst 9.250936e-05   p_cons 8.673607e-01   p_joint 3.183521e-04

Joint ci ratio: 1.343545e-01	ci left: 2.962011e-04	ci right 3.392190e-04	k: 850	n:2680000
Cons ci ratio: 9.362935e-04	ci left: 8.669769e-01	ci right 8.677894e-01	k: 2324588	n:2680000
KS ci ratio: 2.484083e-01	ci left: 8.137814e-05	ci right 1.047992e-04	k: 248	n:2680000
PCDHA10   2680000 perm   3337 sec   (803 perm/sec)   p_kst 9.253731e-05   p_cons 8.673836e-01   p_joint 3.171642e-04

Joint ci ratio: 1.336495e-01	ci left: 2.983335e-04	ci right 3.414158e-04	k: 859	n:2690000
Cons ci ratio: 9.345513e-04	ci left: 8.669778e-01	ci right 8.677887e-01	k: 2333262	n:2690000
KS ci ratio: 2.469252e-01	ci left: 8.212166e-05	ci right 1.055940e-04	k: 251	n:2690000
PCDHA10   2690000 perm   3360 sec   (801 perm/sec)   p_kst 9.330855e-05   p_cons 8.673836e-01   p_joint 3.193309e-04

Joint ci ratio: 1.333397e-01	ci left: 2.986606e-04	ci right 3.416822e-04	k: 863	n:2700000
Cons ci ratio: 9.327947e-04	ci left: 8.669845e-01	ci right 8.677940e-01	k: 2341952	n:2700000
KS ci ratio: 2.469252e-01	ci left: 8.181750e-05	ci right 1.052029e-04	k: 251	n:2700000
PCDHA10   2700000 perm   3383 sec   (798 perm/sec)   p_kst 9.296296e-05   p_cons 8.673896e-01   p_joint 3.196296e-04

Joint ci ratio: 1.331857e-01	ci left: 2.982719e-04	ci right 3.411840e-04	k: 865	n:2710000
Cons ci ratio: 9.311407e-04	ci left: 8.669683e-01	ci right 8.677763e-01	k: 2350580	n:2710000
KS ci ratio: 2.464367e-01	ci left: 8.186178e-05	ci right 1.052064e-04	k: 252	n:2710000
PCDHA10   2710000 perm   3405 sec   (796 perm/sec)   p_kst 9.298893e-05   p_cons 8.673727e-01   p_joint 3.191882e-04

Joint ci ratio: 1.330322e-01	ci left: 2.978862e-04	ci right 3.406894e-04	k: 867	n:2720000
Cons ci ratio: 9.293929e-04	ci left: 8.669776e-01	ci right 8.677841e-01	k: 2359277	n:2720000
KS ci ratio: 2.459511e-01	ci left: 8.190579e-05	ci right 1.052099e-04	k: 253	n:2720000
PCDHA10   2720000 perm   3428 sec   (793 perm/sec)   p_kst 9.301471e-05   p_cons 8.673812e-01   p_joint 3.187500e-04

Joint ci ratio: 1.328029e-01	ci left: 2.978574e-04	ci right 3.405769e-04	k: 870	n:2730000
Cons ci ratio: 9.275795e-04	ci left: 8.670056e-01	ci right 8.678105e-01	k: 2368025	n:2730000
KS ci ratio: 2.459512e-01	ci left: 8.160577e-05	ci right 1.048246e-04	k: 253	n:2730000
PCDHA10   2730000 perm   3451 sec   (791 perm/sec)   p_kst 9.267399e-05   p_cons 8.674084e-01   p_joint 3.186813e-04

Joint ci ratio: 1.325748e-01	ci left: 2.978288e-04	ci right 3.404651e-04	k: 873	n:2740000
Cons ci ratio: 9.258458e-04	ci left: 8.670161e-01	ci right 8.678196e-01	k: 2376726	n:2740000
KS ci ratio: 2.454685e-01	ci left: 8.165043e-05	ci right 1.048294e-04	k: 254	n:2740000
PCDHA10   2740000 perm   3474 sec   (789 perm/sec)   p_kst 9.270073e-05   p_cons 8.674182e-01   p_joint 3.186131e-04

Joint ci ratio: 1.321972e-01	ci left: 2.985038e-04	ci right 3.411054e-04	k: 878	n:2750000
Cons ci ratio: 9.240457e-04	ci left: 8.670456e-01	ci right 8.678475e-01	k: 2385479	n:2750000
KS ci ratio: 2.445114e-01	ci left: 8.203615e-05	ci right 1.052200e-04	k: 256	n:2750000
PCDHA10   2750000 perm   3497 sec   (786 perm/sec)   p_kst 9.309091e-05   p_cons 8.674469e-01   p_joint 3.192727e-04

Joint ci ratio: 1.319722e-01	ci left: 2.984733e-04	ci right 3.409924e-04	k: 881	n:2760000
Cons ci ratio: 9.223898e-04	ci left: 8.670414e-01	ci right 8.678419e-01	k: 2394140	n:2760000
KS ci ratio: 2.440371e-01	ci left: 8.207906e-05	ci right 1.052232e-04	k: 257	n:2760000
PCDHA10   2760000 perm   3520 sec   (784 perm/sec)   p_kst 9.311594e-05   p_cons 8.674420e-01   p_joint 3.192029e-04

Joint ci ratio: 1.318228e-01	ci left: 2.980940e-04	ci right 3.405072e-04	k: 883	n:2770000
Cons ci ratio: 9.207384e-04	ci left: 8.670384e-01	ci right 8.678374e-01	k: 2402804	n:2770000
KS ci ratio: 2.435655e-01	ci left: 8.212170e-05	ci right 1.052264e-04	k: 258	n:2770000
PCDHA10   2770000 perm   3543 sec   (782 perm/sec)   p_kst 9.314079e-05   p_cons 8.674383e-01   p_joint 3.187726e-04

Joint ci ratio: 1.315997e-01	ci left: 2.980653e-04	ci right 3.403970e-04	k: 886	n:2780000
Cons ci ratio: 9.190757e-04	ci left: 8.670404e-01	ci right 8.678380e-01	k: 2411482	n:2780000
KS ci ratio: 2.435656e-01	ci left: 8.182630e-05	ci right 1.048479e-04	k: 258	n:2780000
PCDHA10   2780000 perm   3566 sec   (780 perm/sec)   p_kst 9.280576e-05   p_cons 8.674396e-01   p_joint 3.187050e-04

Joint ci ratio: 1.314516e-01	ci left: 2.976902e-04	ci right 3.399174e-04	k: 888	n:2790000
Cons ci ratio: 9.174649e-04	ci left: 8.670316e-01	ci right 8.678278e-01	k: 2420130	n:2790000
KS ci ratio: 2.435656e-01	ci left: 8.153301e-05	ci right 1.044721e-04	k: 258	n:2790000
PCDHA10   2790000 perm   3589 sec   (777 perm/sec)   p_kst 9.247312e-05   p_cons 8.674301e-01   p_joint 3.182796e-04

Joint ci ratio: 1.312304e-01	ci left: 2.976632e-04	ci right 3.398100e-04	k: 891	n:2800000
Cons ci ratio: 9.158511e-04	ci left: 8.670258e-01	ci right 8.678206e-01	k: 2428786	n:2800000
KS ci ratio: 2.435656e-01	ci left: 8.124182e-05	ci right 1.040990e-04	k: 258	n:2800000
PCDHA10   2800000 perm   3613 sec   (775 perm/sec)   p_kst 9.214286e-05   p_cons 8.674236e-01   p_joint 3.182143e-04

Joint ci ratio: 1.310835e-01	ci left: 2.972923e-04	ci right 3.393358e-04	k: 893	n:2810000
Cons ci ratio: 9.142854e-04	ci left: 8.670100e-01	ci right 8.678034e-01	k: 2437414	n:2810000
KS ci ratio: 2.430968e-01	ci left: 8.128688e-05	ci right 1.041060e-04	k: 259	n:2810000
PCDHA10   2810000 perm   3636 sec   (773 perm/sec)   p_kst 9.217082e-05   p_cons 8.674071e-01   p_joint 3.177936e-04

Joint ci ratio: 1.307912e-01	ci left: 2.976101e-04	ci right 3.395974e-04	k: 897	n:2820000
Cons ci ratio: 9.127094e-04	ci left: 8.669990e-01	ci right 8.677910e-01	k: 2446055	n:2820000
KS ci ratio: 2.430968e-01	ci left: 8.099863e-05	ci right 1.037369e-04	k: 259	n:2820000
PCDHA10   2820000 perm   3660 sec   (771 perm/sec)   p_kst 9.184397e-05   p_cons 8.673954e-01   p_joint 3.180851e-04

Joint ci ratio: 1.316001e-01	ci left: 2.927990e-04	ci right 3.343830e-04	k: 886	n:2830000
Cons ci ratio: 9.110954e-04	ci left: 8.669997e-01	ci right 8.677903e-01	k: 2454729	n:2830000
KS ci ratio: 2.430969e-01	ci left: 8.071241e-05	ci right 1.033703e-04	k: 259	n:2830000
PCDHA10   2830000 perm   3683 sec   (768 perm/sec)   p_kst 9.151943e-05   p_cons 8.673954e-01   p_joint 3.130742e-04

Joint ci ratio: 1.316744e-01	ci left: 2.914275e-04	ci right 3.328419e-04	k: 885	n:2840000
Cons ci ratio: 9.095441e-04	ci left: 8.669867e-01	ci right 8.677759e-01	k: 2463364	n:2840000
KS ci ratio: 2.421672e-01	ci left: 8.108963e-05	ci right 1.037533e-04	k: 261	n:2840000
PCDHA10   2840000 perm   3707 sec   (766 perm/sec)   p_kst 9.190141e-05   p_cons 8.673817e-01   p_joint 3.116197e-04

Joint ci ratio: 1.316002e-01	ci left: 2.907443e-04	ci right 3.320365e-04	k: 886	n:2850000
Cons ci ratio: 9.078665e-04	ci left: 8.670078e-01	ci right 8.677956e-01	k: 2472096	n:2850000
KS ci ratio: 2.421672e-01	ci left: 8.080510e-05	ci right 1.033892e-04	k: 261	n:2850000
PCDHA10   2850000 perm   3731 sec   (764 perm/sec)   p_kst 9.157895e-05   p_cons 8.674021e-01   p_joint 3.108772e-04

Joint ci ratio: 1.314521e-01	ci left: 2.904040e-04	ci right 3.315978e-04	k: 888	n:2860000
Cons ci ratio: 9.062876e-04	ci left: 8.670061e-01	ci right 8.677925e-01	k: 2480763	n:2860000
KS ci ratio: 2.417064e-01	ci left: 8.085102e-05	ci right 1.033985e-04	k: 262	n:2860000
PCDHA10   2860000 perm   3754 sec   (762 perm/sec)   p_kst 9.160839e-05   p_cons 8.673997e-01   p_joint 3.104895e-04

Joint ci ratio: 1.312309e-01	ci left: 2.904031e-04	ci right 3.315221e-04	k: 891	n:2870000
Cons ci ratio: 9.047662e-04	ci left: 8.669917e-01	ci right 8.677769e-01	k: 2489394	n:2870000
KS ci ratio: 2.407925e-01	ci left: 8.122406e-05	ci right 1.037772e-04	k: 264	n:2870000
PCDHA10   2870000 perm   3778 sec   (760 perm/sec)   p_kst 9.198606e-05   p_cons 8.673847e-01   p_joint 3.104530e-04

Joint ci ratio: 1.309376e-01	ci left: 2.907381e-04	ci right 3.318053e-04	k: 895	n:2880000
Cons ci ratio: 9.031570e-04	ci left: 8.670019e-01	ci right 8.677856e-01	k: 2498095	n:2880000
KS ci ratio: 2.407926e-01	ci left: 8.094203e-05	ci right 1.034168e-04	k: 264	n:2880000
PCDHA10   2880000 perm   3802 sec   (757 perm/sec)   p_kst 9.166667e-05   p_cons 8.673941e-01   p_joint 3.107639e-04

Joint ci ratio: 1.306463e-01	ci left: 2.910709e-04	ci right 3.320866e-04	k: 899	n:2890000
Cons ci ratio: 9.015469e-04	ci left: 8.670143e-01	ci right 8.677967e-01	k: 2506803	n:2890000
KS ci ratio: 2.407926e-01	ci left: 8.066195e-05	ci right 1.030590e-04	k: 264	n:2890000
PCDHA10   2890000 perm   3826 sec   (755 perm/sec)   p_kst 9.134948e-05   p_cons 8.674059e-01   p_joint 3.110727e-04

Joint ci ratio: 1.305014e-01	ci left: 2.907343e-04	ci right 3.316536e-04	k: 901	n:2900000
Cons ci ratio: 9.000871e-04	ci left: 8.669905e-01	ci right 8.677715e-01	k: 2515406	n:2900000
KS ci ratio: 2.407926e-01	ci left: 8.038380e-05	ci right 1.027036e-04	k: 264	n:2900000
PCDHA10   2900000 perm   3851 sec   (753 perm/sec)   p_kst 9.103448e-05   p_cons 8.673814e-01   p_joint 3.106897e-04

Joint ci ratio: 1.309378e-01	ci left: 2.877408e-04	ci right 3.283847e-04	k: 895	n:2910000
Cons ci ratio: 8.985725e-04	ci left: 8.669826e-01	ci right 8.677623e-01	k: 2524055	n:2910000
KS ci ratio: 2.403396e-01	ci left: 8.043050e-05	ci right 1.027150e-04	k: 265	n:2910000
PCDHA10   2910000 perm   3875 sec   (751 perm/sec)   p_kst 9.106529e-05   p_cons 8.673729e-01   p_joint 3.075601e-04

Joint ci ratio: 1.307192e-01	ci left: 2.877491e-04	ci right 3.283211e-04	k: 898	n:2920000
Cons ci ratio: 8.969788e-04	ci left: 8.669971e-01	ci right 8.677755e-01	k: 2532769	n:2920000
KS ci ratio: 2.398891e-01	ci left: 8.047692e-05	ci right 1.027263e-04	k: 266	n:2920000
PCDHA10   2920000 perm   3899 sec   (749 perm/sec)   p_kst 9.109589e-05   p_cons 8.673866e-01   p_joint 3.075342e-04

Joint ci ratio: 1.307192e-01	ci left: 2.867670e-04	ci right 3.272006e-04	k: 898	n:2930000
Cons ci ratio: 8.953390e-04	ci left: 8.670255e-01	ci right 8.678024e-01	k: 2541524	n:2930000
KS ci ratio: 2.398891e-01	ci left: 8.020225e-05	ci right 1.023757e-04	k: 266	n:2930000
PCDHA10   2930000 perm   3924 sec   (747 perm/sec)   p_kst 9.078498e-05   p_cons 8.674143e-01   p_joint 3.064846e-04

Joint ci ratio: 1.307193e-01	ci left: 2.857916e-04	ci right 3.260876e-04	k: 898	n:2940000
Cons ci ratio: 8.937716e-04	ci left: 8.670373e-01	ci right 8.678130e-01	k: 2550231	n:2940000
KS ci ratio: 2.398892e-01	ci left: 7.992945e-05	ci right 1.020275e-04	k: 266	n:2940000
PCDHA10   2940000 perm   3948 sec   (745 perm/sec)   p_kst 9.047619e-05   p_cons 8.674255e-01   p_joint 3.054422e-04

Joint ci ratio: 1.304294e-01	ci left: 2.861345e-04	ci right 3.263825e-04	k: 902	n:2950000
Cons ci ratio: 8.922334e-04	ci left: 8.670437e-01	ci right 8.678180e-01	k: 2558922	n:2950000
KS ci ratio: 2.398892e-01	ci left: 7.965850e-05	ci right 1.016816e-04	k: 266	n:2950000
PCDHA10   2950000 perm   3972 sec   (743 perm/sec)   p_kst 9.016949e-05   p_cons 8.674312e-01   p_joint 3.057627e-04

Joint ci ratio: 1.299982e-01	ci left: 2.871288e-04	ci right 3.273728e-04	k: 908	n:2960000
Cons ci ratio: 8.906940e-04	ci left: 8.670524e-01	ci right 8.678253e-01	k: 2567620	n:2960000
KS ci ratio: 2.389957e-01	ci left: 8.002453e-05	ci right 1.020542e-04	k: 268	n:2960000
PCDHA10   2960000 perm   3997 sec   (741 perm/sec)   p_kst 9.054054e-05   p_cons 8.674392e-01   p_joint 3.067568e-04

Joint ci ratio: 1.297842e-01	ci left: 2.871393e-04	ci right 3.273135e-04	k: 911	n:2970000
Cons ci ratio: 8.891924e-04	ci left: 8.670532e-01	ci right 8.678249e-01	k: 2576295	n:2970000
KS ci ratio: 2.389958e-01	ci left: 7.975509e-05	ci right 1.017106e-04	k: 268	n:2970000
PCDHA10   2970000 perm   4022 sec   (739 perm/sec)   p_kst 9.023569e-05   p_cons 8.674394e-01   p_joint 3.067340e-04

Joint ci ratio: 1.293593e-01	ci left: 2.881240e-04	ci right 3.282937e-04	k: 917	n:2980000
Cons ci ratio: 8.877593e-04	ci left: 8.670383e-01	ci right 8.678087e-01	k: 2584923	n:2980000
KS ci ratio: 2.389958e-01	ci left: 7.948745e-05	ci right 1.013693e-04	k: 268	n:2980000
PCDHA10   2980000 perm   4046 sec   (737 perm/sec)   p_kst 8.993289e-05   p_cons 8.674238e-01   p_joint 3.077181e-04

Joint ci ratio: 1.291485e-01	ci left: 2.881312e-04	ci right 3.282315e-04	k: 920	n:2990000
Cons ci ratio: 8.862429e-04	ci left: 8.670469e-01	ci right 8.678160e-01	k: 2593621	n:2990000
KS ci ratio: 2.389958e-01	ci left: 7.922160e-05	ci right 1.010303e-04	k: 268	n:2990000
PCDHA10   2990000 perm   4070 sec   (735 perm/sec)   p_kst 8.963211e-05   p_cons 8.674318e-01   p_joint 3.076923e-04

Joint ci ratio: 1.298557e-01	ci left: 2.839454e-04	ci right 3.236962e-04	k: 910	n:3000000
Cons ci ratio: 8.847586e-04	ci left: 8.670491e-01	ci right 8.678169e-01	k: 2602300	n:3000000
KS ci ratio: 2.389959e-01	ci left: 7.895753e-05	ci right 1.006935e-04	k: 268	n:3000000
PCDHA10   3000000 perm   4095 sec   (733 perm/sec)   p_kst 8.933333e-05   p_cons 8.674333e-01   p_joint 3.033333e-04

Joint ci ratio: 1.296424e-01	ci left: 2.839664e-04	ci right 3.236498e-04	k: 913	n:3010000
Cons ci ratio: 8.833124e-04	ci left: 8.670433e-01	ci right 8.678098e-01	k: 2610955	n:3010000
KS ci ratio: 2.381123e-01	ci left: 7.931995e-05	ci right 1.010631e-04	k: 270	n:3010000
PCDHA10   3010000 perm   4120 sec   (731 perm/sec)   p_kst 8.970100e-05   p_cons 8.674269e-01   p_joint 3.033223e-04

Joint ci ratio: 1.295008e-01	ci left: 2.836669e-04	ci right 3.232618e-04	k: 915	n:3020000
Cons ci ratio: 8.818579e-04	ci left: 8.670415e-01	ci right 8.678068e-01	k: 2619622	n:3020000
KS ci ratio: 2.376742e-01	ci left: 7.936870e-05	ci right 1.010792e-04	k: 271	n:3020000
PCDHA10   3020000 perm   4145 sec   (729 perm/sec)   p_kst 8.973510e-05   p_cons 8.674245e-01   p_joint 3.029801e-04

Joint ci ratio: 1.291487e-01	ci left: 2.843275e-04	ci right 3.238985e-04	k: 920	n:3030000
Cons ci ratio: 8.803930e-04	ci left: 8.670444e-01	ci right 8.678084e-01	k: 2628303	n:3030000
KS ci ratio: 2.372385e-01	ci left: 7.941715e-05	ci right 1.010953e-04	k: 272	n:3030000
PCDHA10   3030000 perm   4170 sec   (727 perm/sec)   p_kst 8.976898e-05   p_cons 8.674267e-01   p_joint 3.036304e-04

Joint ci ratio: 1.292190e-01	ci left: 2.830739e-04	ci right 3.224935e-04	k: 919	n:3040000
Cons ci ratio: 8.789567e-04	ci left: 8.670416e-01	ci right 8.678044e-01	k: 2636967	n:3040000
KS ci ratio: 2.372385e-01	ci left: 7.915591e-05	ci right 1.007627e-04	k: 272	n:3040000
PCDHA10   3040000 perm   4195 sec   (725 perm/sec)   p_kst 8.947368e-05   p_cons 8.674234e-01   p_joint 3.023026e-04

Joint ci ratio: 1.291489e-01	ci left: 2.824630e-04	ci right 3.217746e-04	k: 920	n:3050000
Cons ci ratio: 8.775562e-04	ci left: 8.670314e-01	ci right 8.677929e-01	k: 2645608	n:3050000
KS ci ratio: 2.372385e-01	ci left: 7.889638e-05	ci right 1.004324e-04	k: 272	n:3050000
PCDHA10   3050000 perm   4221 sec   (723 perm/sec)   p_kst 8.918033e-05   p_cons 8.674125e-01   p_joint 3.016393e-04

Joint ci ratio: 1.290789e-01	ci left: 2.818562e-04	ci right 3.210604e-04	k: 921	n:3060000
Cons ci ratio: 8.762009e-04	ci left: 8.670110e-01	ci right 8.677713e-01	k: 2654218	n:3060000
KS ci ratio: 2.368052e-01	ci left: 7.894594e-05	ci right 1.004503e-04	k: 273	n:3060000
PCDHA10   3060000 perm   4247 sec   (721 perm/sec)   p_kst 8.921569e-05   p_cons 8.673915e-01   p_joint 3.009804e-04

Joint ci ratio: 1.287997e-01	ci left: 2.821990e-04	ci right 3.213595e-04	k: 925	n:3070000
Cons ci ratio: 8.746958e-04	ci left: 8.670319e-01	ci right 8.677909e-01	k: 2662954	n:3070000
KS ci ratio: 2.355193e-01	ci left: 7.960818e-05	ci right 1.011580e-04	k: 276	n:3070000
PCDHA10   3070000 perm   4272 sec   (719 perm/sec)   p_kst 8.990228e-05   p_cons 8.674117e-01   p_joint 3.013029e-04

Joint ci ratio: 1.286609e-01	ci left: 2.819112e-04	ci right 3.209864e-04	k: 927	n:3080000
Cons ci ratio: 8.732773e-04	ci left: 8.670318e-01	ci right 8.677896e-01	k: 2671626	n:3080000
KS ci ratio: 2.346736e-01	ci left: 7.996082e-05	ci right 1.015171e-04	k: 278	n:3080000
PCDHA10   3080000 perm   4298 sec   (717 perm/sec)   p_kst 9.025974e-05   p_cons 8.674110e-01   p_joint 3.009740e-04

Joint ci ratio: 1.284534e-01	ci left: 2.819385e-04	ci right 3.209497e-04	k: 930	n:3090000
Cons ci ratio: 8.718472e-04	ci left: 8.670366e-01	ci right 8.677931e-01	k: 2680313	n:3090000
KS ci ratio: 2.346736e-01	ci left: 7.970204e-05	ci right 1.011886e-04	k: 278	n:3090000
PCDHA10   3090000 perm   4323 sec   (715 perm/sec)   p_kst 8.996764e-05   p_cons 8.674152e-01   p_joint 3.009709e-04

Joint ci ratio: 1.298563e-01	ci left: 2.747858e-04	ci right 3.132545e-04	k: 910	n:3100000
Cons ci ratio: 8.704169e-04	ci left: 8.670433e-01	ci right 8.677986e-01	k: 2689006	n:3100000
KS ci ratio: 2.342542e-01	ci left: 7.974857e-05	ci right 1.012037e-04	k: 279	n:3100000
PCDHA10   3100000 perm   4349 sec   (713 perm/sec)   p_kst 9.000000e-05   p_cons 8.674213e-01   p_joint 2.935484e-04

Joint ci ratio: 1.296430e-01	ci left: 2.748356e-04	ci right 3.132432e-04	k: 913	n:3110000
Cons ci ratio: 8.690203e-04	ci left: 8.670429e-01	ci right 8.677970e-01	k: 2697677	n:3110000
KS ci ratio: 2.334220e-01	ci left: 8.009756e-05	ci right 1.015589e-04	k: 281	n:3110000
PCDHA10   3110000 perm   4375 sec   (711 perm/sec)   p_kst 9.035370e-05   p_cons 8.674203e-01   p_joint 2.935691e-04

Joint ci ratio: 1.292898e-01	ci left: 2.755053e-04	ci right 3.138936e-04	k: 918	n:3120000
Cons ci ratio: 8.676473e-04	ci left: 8.670379e-01	ci right 8.677909e-01	k: 2706334	n:3120000
KS ci ratio: 2.334220e-01	ci left: 7.984084e-05	ci right 1.012334e-04	k: 281	n:3120000
PCDHA10   3120000 perm   4401 sec   (709 perm/sec)   p_kst 9.006410e-05   p_cons 8.674147e-01   p_joint 2.942308e-04

Joint ci ratio: 1.291494e-01	ci left: 2.752435e-04	ci right 3.135504e-04	k: 920	n:3130000
Cons ci ratio: 8.662748e-04	ci left: 8.670347e-01	ci right 8.677864e-01	k: 2714996	n:3130000
KS ci ratio: 2.330092e-01	ci left: 7.988658e-05	ci right 1.012481e-04	k: 282	n:3130000
PCDHA10   3130000 perm   4427 sec   (707 perm/sec)   p_kst 9.009585e-05   p_cons 8.674109e-01   p_joint 2.939297e-04

Joint ci ratio: 1.290094e-01	ci left: 2.749833e-04	ci right 3.132093e-04	k: 922	n:3140000
Cons ci ratio: 8.648465e-04	ci left: 8.670480e-01	ci right 8.677985e-01	k: 2723710	n:3140000
KS ci ratio: 2.330093e-01	ci left: 7.963216e-05	ci right 1.009257e-04	k: 282	n:3140000
PCDHA10   3140000 perm   4453 sec   (705 perm/sec)   p_kst 8.980892e-05   p_cons 8.674236e-01   p_joint 2.936306e-04

Joint ci ratio: 1.285920e-01	ci left: 2.759537e-04	ci right 3.141811e-04	k: 928	n:3150000
Cons ci ratio: 8.634407e-04	ci left: 8.670571e-01	ci right 8.678064e-01	k: 2732411	n:3150000
KS ci ratio: 2.321902e-01	ci left: 7.997729e-05	ci right 1.012771e-04	k: 284	n:3150000
PCDHA10   3150000 perm   4479 sec   (703 perm/sec)   p_kst 9.015873e-05   p_cons 8.674321e-01   p_joint 2.946032e-04

Joint ci ratio: 1.284539e-01	ci left: 2.756930e-04	ci right 3.138401e-04	k: 930	n:3160000
Cons ci ratio: 8.620679e-04	ci left: 8.670592e-01	ci right 8.678073e-01	k: 2741090	n:3160000
KS ci ratio: 2.321903e-01	ci left: 7.972419e-05	ci right 1.009566e-04	k: 284	n:3160000
PCDHA10   3160000 perm   4508 sec   (701 perm/sec)   p_kst 8.987342e-05   p_cons 8.674335e-01   p_joint 2.943038e-04

Joint ci ratio: 1.146301e-01	ci left: 3.476277e-04	ci right 3.902022e-04	k: 1168	n:3170000
Cons ci ratio: 8.607063e-04	ci left: 8.670600e-01	ci right 8.678069e-01	k: 2749765	n:3170000
KS ci ratio: 2.317840e-01	ci left: 7.976982e-05	ci right 1.009719e-04	k: 285	n:3170000
PCDHA10   3170000 perm   4536 sec   (699 perm/sec)   p_kst 8.990536e-05   p_cons 8.674338e-01   p_joint 3.684543e-04

Joint ci ratio: 1.144833e-01	ci left: 3.474509e-04	ci right 3.899456e-04	k: 1171	n:3180000
Cons ci ratio: 8.593453e-04	ci left: 8.670623e-01	ci right 8.678081e-01	k: 2758445	n:3180000
KS ci ratio: 2.313798e-01	ci left: 7.981520e-05	ci right 1.009871e-04	k: 286	n:3180000
PCDHA10   3180000 perm   4562 sec   (697 perm/sec)   p_kst 8.993711e-05   p_cons 8.674355e-01   p_joint 3.682390e-04

Joint ci ratio: 1.144834e-01	ci left: 3.463617e-04	ci right 3.887232e-04	k: 1171	n:3190000
Cons ci ratio: 8.579860e-04	ci left: 8.670659e-01	ci right 8.678105e-01	k: 2767129	n:3190000
KS ci ratio: 2.313798e-01	ci left: 7.956499e-05	ci right 1.006705e-04	k: 286	n:3190000
PCDHA10   3190000 perm   4588 sec   (695 perm/sec)   p_kst 8.965517e-05   p_cons 8.674386e-01   p_joint 3.670846e-04

Joint ci ratio: 1.143858e-01	ci left: 3.458864e-04	ci right 3.881513e-04	k: 1173	n:3200000
Cons ci ratio: 8.566832e-04	ci left: 8.670561e-01	ci right 8.677995e-01	k: 2775770	n:3200000
KS ci ratio: 2.309778e-01	ci left: 7.961075e-05	ci right 1.006865e-04	k: 287	n:3200000
PCDHA10   3200000 perm   4615 sec   (693 perm/sec)   p_kst 8.968750e-05   p_cons 8.674281e-01   p_joint 3.665625e-04

Joint ci ratio: 1.143372e-01	ci left: 3.451115e-04	ci right 3.872626e-04	k: 1174	n:3210000
Cons ci ratio: 8.553261e-04	ci left: 8.670625e-01	ci right 8.678047e-01	k: 2784463	n:3210000
KS ci ratio: 2.309778e-01	ci left: 7.936274e-05	ci right 1.003728e-04	k: 287	n:3210000
PCDHA10   3210000 perm   4641 sec   (692 perm/sec)   p_kst 8.940810e-05   p_cons 8.674340e-01   p_joint 3.657321e-04

Joint ci ratio: 1.152236e-01	ci left: 3.386100e-04	ci right 3.803095e-04	k: 1156	n:3220000
Cons ci ratio: 8.539915e-04	ci left: 8.670645e-01	ci right 8.678056e-01	k: 2793142	n:3220000
KS ci ratio: 2.305779e-01	ci left: 7.940888e-05	ci right 1.003896e-04	k: 288	n:3220000
PCDHA10   3220000 perm   4669 sec   (690 perm/sec)   p_kst 8.944099e-05   p_cons 8.674354e-01   p_joint 3.590062e-04

Joint ci ratio: 1.152236e-01	ci left: 3.375617e-04	ci right 3.791321e-04	k: 1156	n:3230000
Cons ci ratio: 8.527103e-04	ci left: 8.670538e-01	ci right 8.677938e-01	k: 2801780	n:3230000
KS ci ratio: 2.305779e-01	ci left: 7.916303e-05	ci right 1.000788e-04	k: 288	n:3230000
PCDHA10   3230000 perm   4695 sec   (688 perm/sec)   p_kst 8.916409e-05   p_cons 8.674241e-01   p_joint 3.578947e-04

Joint ci ratio: 1.164895e-01	ci left: 3.290273e-04	ci right 3.700225e-04	k: 1131	n:3240000
Cons ci ratio: 8.514313e-04	ci left: 8.670441e-01	ci right 8.677830e-01	k: 2810421	n:3240000
KS ci ratio: 2.301800e-01	ci left: 7.920953e-05	ci right 1.000963e-04	k: 289	n:3240000
PCDHA10   3240000 perm   4722 sec   (686 perm/sec)   p_kst 8.919753e-05   p_cons 8.674139e-01   p_joint 3.490741e-04

Joint ci ratio: 1.164382e-01	ci left: 3.283136e-04	ci right 3.692006e-04	k: 1132	n:3250000
Cons ci ratio: 8.501297e-04	ci left: 8.670422e-01	ci right 8.677799e-01	k: 2819087	n:3250000
KS ci ratio: 2.297841e-01	ci left: 7.925578e-05	ci right 1.001137e-04	k: 290	n:3250000
PCDHA10   3250000 perm   4750 sec   (684 perm/sec)   p_kst 8.923077e-05   p_cons 8.674114e-01   p_joint 3.483077e-04

Joint ci ratio: 1.162332e-01	ci left: 3.284978e-04	ci right 3.693308e-04	k: 1136	n:3260000
Cons ci ratio: 8.489302e-04	ci left: 8.670142e-01	ci right 8.677508e-01	k: 2827668	n:3260000
KS ci ratio: 2.297842e-01	ci left: 7.901266e-05	ci right 9.980661e-05	k: 290	n:3260000
PCDHA10   3260000 perm   4777 sec   (682 perm/sec)   p_kst 8.895706e-05   p_cons 8.673828e-01   p_joint 3.484663e-04

Joint ci ratio: 1.160801e-01	ci left: 3.283840e-04	ci right 3.691454e-04	k: 1139	n:3270000
Cons ci ratio: 8.476309e-04	ci left: 8.670148e-01	ci right 8.677503e-01	k: 2836342	n:3270000
KS ci ratio: 2.297842e-01	ci left: 7.877103e-05	ci right 9.950140e-05	k: 290	n:3270000
PCDHA10   3270000 perm   4804 sec   (681 perm/sec)   p_kst 8.868502e-05   p_cons 8.673829e-01   p_joint 3.483180e-04

Joint ci ratio: 1.160293e-01	ci left: 3.276789e-04	ci right 3.683337e-04	k: 1140	n:3280000
Cons ci ratio: 8.463410e-04	ci left: 8.670145e-01	ci right 8.677489e-01	k: 2845013	n:3280000
KS ci ratio: 2.297842e-01	ci left: 7.853087e-05	ci right 9.919804e-05	k: 290	n:3280000
PCDHA10   3280000 perm   4831 sec   (679 perm/sec)   p_kst 8.841463e-05   p_cons 8.673820e-01   p_joint 3.475610e-04

Joint ci ratio: 1.158771e-01	ci left: 3.275683e-04	ci right 3.681524e-04	k: 1143	n:3290000
Cons ci ratio: 8.450893e-04	ci left: 8.670054e-01	ci right 8.677387e-01	k: 2853655	n:3290000
KS ci ratio: 2.293904e-01	ci left: 7.857865e-05	ci right 9.921793e-05	k: 291	n:3290000
PCDHA10   3290000 perm   4858 sec   (677 perm/sec)   p_kst 8.844985e-05   p_cons 8.673723e-01   p_joint 3.474164e-04

Joint ci ratio: 1.156246e-01	ci left: 3.280470e-04	ci right 3.685958e-04	k: 1148	n:3300000
Cons ci ratio: 8.438309e-04	ci left: 8.669996e-01	ci right 8.677318e-01	k: 2862308	n:3300000
KS ci ratio: 2.289986e-01	ci left: 7.862616e-05	ci right 9.923767e-05	k: 292	n:3300000
PCDHA10   3300000 perm   4886 sec   (675 perm/sec)   p_kst 8.848485e-05   p_cons 8.673661e-01   p_joint 3.478788e-04

Joint ci ratio: 1.153738e-01	ci left: 3.285228e-04	ci right 3.690364e-04	k: 1153	n:3310000
Cons ci ratio: 8.425107e-04	ci left: 8.670124e-01	ci right 8.677435e-01	k: 2871022	n:3310000
KS ci ratio: 2.286089e-01	ci left: 7.867342e-05	ci right 9.925726e-05	k: 293	n:3310000
PCDHA10   3310000 perm   4913 sec   (674 perm/sec)   p_kst 8.851964e-05   p_cons 8.673782e-01   p_joint 3.483384e-04

Joint ci ratio: 1.152242e-01	ci left: 3.284108e-04	ci right 3.688545e-04	k: 1156	n:3320000
Cons ci ratio: 8.412538e-04	ci left: 8.670094e-01	ci right 8.677394e-01	k: 2879684	n:3320000
KS ci ratio: 2.286089e-01	ci left: 7.843645e-05	ci right 9.895829e-05	k: 293	n:3320000
PCDHA10   3320000 perm   4940 sec   (672 perm/sec)   p_kst 8.825301e-05   p_cons 8.673747e-01   p_joint 3.481928e-04

Joint ci ratio: 1.149265e-01	ci left: 3.291746e-04	ci right 3.696005e-04	k: 1162	n:3330000
Cons ci ratio: 8.399796e-04	ci left: 8.670127e-01	ci right 8.677416e-01	k: 2888367	n:3330000
KS ci ratio: 2.282211e-01	ci left: 7.848403e-05	ci right 9.897857e-05	k: 294	n:3330000
PCDHA10   3330000 perm   4967 sec   (670 perm/sec)   p_kst 8.828829e-05   p_cons 8.673775e-01   p_joint 3.489489e-04

Joint ci ratio: 1.147294e-01	ci left: 3.293522e-04	ci right 3.697259e-04	k: 1166	n:3340000
Cons ci ratio: 8.387603e-04	ci left: 8.670025e-01	ci right 8.677303e-01	k: 2897005	n:3340000
KS ci ratio: 2.270693e-01	ci left: 7.909603e-05	ci right 9.963156e-05	k: 297	n:3340000
PCDHA10   3340000 perm   4994 sec   (669 perm/sec)   p_kst 8.892216e-05   p_cons 8.673668e-01   p_joint 3.491018e-04

Joint ci ratio: 1.145333e-01	ci left: 3.295289e-04	ci right 3.698505e-04	k: 1170	n:3350000
Cons ci ratio: 8.374853e-04	ci left: 8.670092e-01	ci right 8.677359e-01	k: 2905699	n:3350000
KS ci ratio: 2.263111e-01	ci left: 7.942304e-05	ci right 9.996501e-05	k: 299	n:3350000
PCDHA10   3350000 perm   5022 sec   (667 perm/sec)   p_kst 8.925373e-05   p_cons 8.673728e-01   p_joint 3.492537e-04

Joint ci ratio: 1.144356e-01	ci left: 3.291263e-04	ci right 3.693620e-04	k: 1172	n:3360000
Cons ci ratio: 8.362292e-04	ci left: 8.670122e-01	ci right 8.677378e-01	k: 2914381	n:3360000
KS ci ratio: 2.263112e-01	ci left: 7.918666e-05	ci right 9.966750e-05	k: 299	n:3360000
PCDHA10   3360000 perm   5049 sec   (665 perm/sec)   p_kst 8.898810e-05   p_cons 8.673753e-01   p_joint 3.488095e-04

Joint ci ratio: 1.143382e-01	ci left: 3.287262e-04	ci right 3.688764e-04	k: 1174	n:3370000
Cons ci ratio: 8.350530e-04	ci left: 8.669947e-01	ci right 8.677192e-01	k: 2922994	n:3370000
KS ci ratio: 2.259349e-01	ci left: 7.923162e-05	ci right 9.968526e-05	k: 300	n:3370000
PCDHA10   3370000 perm   5076 sec   (664 perm/sec)   p_kst 8.902077e-05   p_cons 8.673573e-01   p_joint 3.483680e-04

Joint ci ratio: 1.142410e-01	ci left: 3.283284e-04	ci right 3.683937e-04	k: 1176	n:3380000
Cons ci ratio: 8.338485e-04	ci left: 8.669864e-01	ci right 8.677100e-01	k: 2931638	n:3380000
KS ci ratio: 2.259349e-01	ci left: 7.899720e-05	ci right 9.939034e-05	k: 300	n:3380000
PCDHA10   3380000 perm   5104 sec   (662 perm/sec)   p_kst 8.875740e-05   p_cons 8.673485e-01   p_joint 3.479290e-04

Joint ci ratio: 1.141441e-01	ci left: 3.279330e-04	ci right 3.679138e-04	k: 1178	n:3390000
Cons ci ratio: 8.326204e-04	ci left: 8.669862e-01	ci right 8.677087e-01	k: 2940309	n:3390000
KS ci ratio: 2.259350e-01	ci left: 7.876417e-05	ci right 9.909715e-05	k: 300	n:3390000
PCDHA10   3390000 perm   5132 sec   (661 perm/sec)   p_kst 8.849558e-05   p_cons 8.673478e-01   p_joint 3.474926e-04

Joint ci ratio: 1.111211e-01	ci left: 3.455478e-04	ci right 3.864874e-04	k: 1243	n:3400000
Cons ci ratio: 8.314232e-04	ci left: 8.669790e-01	ci right 8.677004e-01	k: 2948956	n:3400000
KS ci ratio: 2.092233e-01	ci left: 9.243829e-05	ci right 1.143104e-04	k: 350	n:3400000
PCDHA10   3400000 perm   5160 sec   (659 perm/sec)   p_kst 1.029412e-04   p_cons 8.673400e-01   p_joint 3.655882e-04

Joint ci ratio: 1.110319e-01	ci left: 3.451047e-04	ci right 3.859568e-04	k: 1245	n:3410000
Cons ci ratio: 8.301941e-04	ci left: 8.669820e-01	ci right 8.677024e-01	k: 2957638	n:3410000
KS ci ratio: 2.089259e-01	ci left: 9.244511e-05	ci right 1.142838e-04	k: 351	n:3410000
PCDHA10   3410000 perm   5188 sec   (657 perm/sec)   p_kst 1.029326e-04   p_cons 8.673425e-01   p_joint 3.651026e-04

Joint ci ratio: 1.109874e-01	ci left: 3.443799e-04	ci right 3.851288e-04	k: 1246	n:3420000
Cons ci ratio: 8.289873e-04	ci left: 8.669804e-01	ci right 8.676997e-01	k: 2966304	n:3420000
KS ci ratio: 2.086297e-01	ci left: 9.245191e-05	ci right 1.142573e-04	k: 352	n:3420000
PCDHA10   3420000 perm   5216 sec   (656 perm/sec)   p_kst 1.029240e-04   p_cons 8.673404e-01   p_joint 3.643275e-04

Joint ci ratio: 1.107213e-01	ci left: 3.450767e-04	ci right 3.858037e-04	k: 1252	n:3430000
Cons ci ratio: 8.277176e-04	ci left: 8.669977e-01	ci right 8.677159e-01	k: 2975035	n:3430000
KS ci ratio: 2.086298e-01	ci left: 9.218237e-05	ci right 1.139242e-04	k: 352	n:3430000
PCDHA10   3430000 perm   5244 sec   (654 perm/sec)   p_kst 1.026239e-04   p_cons 8.673571e-01   p_joint 3.650146e-04

Joint ci ratio: 1.105450e-01	ci left: 3.452042e-04	ci right 3.858772e-04	k: 1256	n:3440000
Cons ci ratio: 8.265247e-04	ci left: 8.669952e-01	ci right 8.677123e-01	k: 2983698	n:3440000
KS ci ratio: 2.080412e-01	ci left: 9.246547e-05	ci right 1.142047e-04	k: 354	n:3440000
PCDHA10   3440000 perm   5271 sec   (653 perm/sec)   p_kst 1.029070e-04   p_cons 8.673541e-01   p_joint 3.651163e-04

Joint ci ratio: 1.124401e-01	ci left: 3.323690e-04	ci right 3.722456e-04	k: 1214	n:3450000
Cons ci ratio: 8.252641e-04	ci left: 8.670130e-01	ci right 8.677290e-01	k: 2992431	n:3450000
KS ci ratio: 2.080413e-01	ci left: 9.219745e-05	ci right 1.138737e-04	k: 354	n:3450000
PCDHA10   3450000 perm   5299 sec   (651 perm/sec)   p_kst 1.026087e-04   p_cons 8.673713e-01   p_joint 3.518841e-04

Joint ci ratio: 1.122555e-01	ci left: 3.325320e-04	ci right 3.723583e-04	k: 1218	n:3460000
Cons ci ratio: 8.240859e-04	ci left: 8.670092e-01	ci right 8.677243e-01	k: 3001090	n:3460000
KS ci ratio: 2.077489e-01	ci left: 9.220495e-05	ci right 1.138486e-04	k: 355	n:3460000
PCDHA10   3460000 perm   5326 sec   (650 perm/sec)   p_kst 1.026012e-04   p_cons 8.673671e-01   p_joint 3.520231e-04

Joint ci ratio: 1.121176e-01	ci left: 3.324140e-04	ci right 3.721740e-04	k: 1221	n:3470000
Cons ci ratio: 8.229302e-04	ci left: 8.670006e-01	ci right 8.677146e-01	k: 3009732	n:3470000
KS ci ratio: 2.074577e-01	ci left: 9.221244e-05	ci right 1.138237e-04	k: 356	n:3470000
PCDHA10   3470000 perm   5353 sec   (648 perm/sec)   p_kst 1.025937e-04   p_cons 8.673579e-01   p_joint 3.518732e-04

Joint ci ratio: 1.119803e-01	ci left: 3.322967e-04	ci right 3.719907e-04	k: 1224	n:3480000
Cons ci ratio: 8.217866e-04	ci left: 8.669900e-01	ci right 8.677031e-01	k: 3018367	n:3480000
KS ci ratio: 2.071678e-01	ci left: 9.221990e-05	ci right 1.137988e-04	k: 357	n:3480000
PCDHA10   3480000 perm   5381 sec   (647 perm/sec)   p_kst 1.025862e-04   p_cons 8.673468e-01   p_joint 3.517241e-04

Joint ci ratio: 1.118890e-01	ci left: 3.319015e-04	ci right 3.715140e-04	k: 1226	n:3490000
Cons ci ratio: 8.205977e-04	ci left: 8.669935e-01	ci right 8.677056e-01	k: 3027051	n:3490000
KS ci ratio: 2.068790e-01	ci left: 9.222734e-05	ci right 1.137741e-04	k: 358	n:3490000
PCDHA10   3490000 perm   5410 sec   (645 perm/sec)   p_kst 1.025788e-04   p_cons 8.673499e-01   p_joint 3.512894e-04

Joint ci ratio: 1.117525e-01	ci left: 3.317864e-04	ci right 3.713336e-04	k: 1229	n:3500000
Cons ci ratio: 8.194332e-04	ci left: 8.669916e-01	ci right 8.677026e-01	k: 3035716	n:3500000
KS ci ratio: 2.063051e-01	ci left: 9.250570e-05	ci right 1.140500e-04	k: 360	n:3500000
PCDHA10   3500000 perm   5438 sec   (644 perm/sec)   p_kst 1.028571e-04   p_cons 8.673474e-01   p_joint 3.511429e-04

Joint ci ratio: 1.117071e-01	ci left: 3.311181e-04	ci right 3.705686e-04	k: 1230	n:3510000
Cons ci ratio: 8.182797e-04	ci left: 8.669880e-01	ci right 8.676980e-01	k: 3044375	n:3510000
KS ci ratio: 2.060200e-01	ci left: 9.251234e-05	ci right 1.140247e-04	k: 361	n:3510000
PCDHA10   3510000 perm   5468 sec   (642 perm/sec)   p_kst 1.028490e-04   p_cons 8.673433e-01   p_joint 3.504274e-04

Joint ci ratio: 1.113908e-01	ci left: 3.321106e-04	ci right 3.715599e-04	k: 1237	n:3520000
Cons ci ratio: 8.171644e-04	ci left: 8.669750e-01	ci right 8.676840e-01	k: 3053001	n:3520000
KS ci ratio: 2.057360e-01	ci left: 9.251897e-05	ci right 1.139994e-04	k: 362	n:3520000
PCDHA10   3520000 perm   5497 sec   (640 perm/sec)   p_kst 1.028409e-04   p_cons 8.673298e-01   p_joint 3.514205e-04

Joint ci ratio: 1.112561e-01	ci left: 3.319959e-04	ci right 3.713808e-04	k: 1240	n:3530000
Cons ci ratio: 8.159512e-04	ci left: 8.669910e-01	ci right 8.676990e-01	k: 3061729	n:3530000
KS ci ratio: 2.054532e-01	ci left: 9.252558e-05	ci right 1.139743e-04	k: 363	n:3530000
PCDHA10   3530000 perm   5526 sec   (639 perm/sec)   p_kst 1.028329e-04   p_cons 8.673453e-01   p_joint 3.512748e-04

Joint ci ratio: 1.108548e-01	ci left: 3.335299e-04	ci right 3.729447e-04	k: 1249	n:3540000
Cons ci ratio: 8.148074e-04	ci left: 8.669889e-01	ci right 8.676958e-01	k: 3070393	n:3540000
KS ci ratio: 2.051716e-01	ci left: 9.253217e-05	ci right 1.139494e-04	k: 364	n:3540000
PCDHA10   3540000 perm   5555 sec   (637 perm/sec)   p_kst 1.028249e-04   p_cons 8.673427e-01   p_joint 3.528249e-04

Joint ci ratio: 1.106778e-01	ci left: 3.336859e-04	ci right 3.730521e-04	k: 1253	n:3550000
Cons ci ratio: 8.136096e-04	ci left: 8.670033e-01	ci right 8.677093e-01	k: 3079116	n:3550000
KS ci ratio: 2.048911e-01	ci left: 9.253875e-05	ci right 1.139245e-04	k: 365	n:3550000
PCDHA10   3550000 perm   5584 sec   (636 perm/sec)   p_kst 1.028169e-04   p_cons 8.673566e-01   p_joint 3.529577e-04

Joint ci ratio: 1.105457e-01	ci left: 3.335680e-04	ci right 3.728702e-04	k: 1256	n:3560000
Cons ci ratio: 8.124368e-04	ci left: 8.670121e-01	ci right 8.677171e-01	k: 3087819	n:3560000
KS ci ratio: 2.046118e-01	ci left: 9.254530e-05	ci right 1.138998e-04	k: 366	n:3560000
PCDHA10   3560000 perm   5613 sec   (634 perm/sec)   p_kst 1.028090e-04   p_cons 8.673649e-01   p_joint 3.528090e-04

Joint ci ratio: 1.104578e-01	ci left: 3.331783e-04	ci right 3.724014e-04	k: 1258	n:3570000
Cons ci ratio: 8.113117e-04	ci left: 8.670088e-01	ci right 8.677127e-01	k: 3096479	n:3570000
KS ci ratio: 2.046118e-01	ci left: 9.228607e-05	ci right 1.135807e-04	k: 366	n:3570000
PCDHA10   3570000 perm   5642 sec   (633 perm/sec)   p_kst 1.025210e-04   p_cons 8.673611e-01   p_joint 3.523810e-04

Joint ci ratio: 1.103702e-01	ci left: 3.327909e-04	ci right 3.719353e-04	k: 1260	n:3580000
Cons ci ratio: 8.101931e-04	ci left: 8.670049e-01	ci right 8.677079e-01	k: 3105137	n:3580000
KS ci ratio: 2.046118e-01	ci left: 9.202829e-05	ci right 1.132635e-04	k: 366	n:3580000
PCDHA10   3580000 perm   5671 sec   (631 perm/sec)   p_kst 1.022346e-04   p_cons 8.673567e-01   p_joint 3.519553e-04

Joint ci ratio: 1.134733e-01	ci left: 3.134523e-04	ci right 3.514281e-04	k: 1192	n:3590000
Cons ci ratio: 8.090576e-04	ci left: 8.670072e-01	ci right 8.677092e-01	k: 3113817	n:3590000
KS ci ratio: 2.043336e-01	ci left: 9.203623e-05	ci right 1.132408e-04	k: 367	n:3590000
PCDHA10   3590000 perm   5702 sec   (630 perm/sec)   p_kst 1.022284e-04   p_cons 8.673585e-01   p_joint 3.320334e-04

Joint ci ratio: 1.133309e-01	ci left: 3.133913e-04	ci right 3.513088e-04	k: 1195	n:3600000
Cons ci ratio: 8.079191e-04	ci left: 8.670117e-01	ci right 8.677127e-01	k: 3122505	n:3600000
KS ci ratio: 2.040566e-01	ci left: 9.204415e-05	ci right 1.132182e-04	k: 368	n:3600000
PCDHA10   3600000 perm   5732 sec   (628 perm/sec)   p_kst 1.022222e-04   p_cons 8.673625e-01   p_joint 3.319444e-04

Joint ci ratio: 1.151760e-01	ci left: 3.022976e-04	ci right 3.395088e-04	k: 1157	n:3610000
Cons ci ratio: 8.068232e-04	ci left: 8.670054e-01	ci right 8.677054e-01	k: 3131154	n:3610000
KS ci ratio: 2.037806e-01	ci left: 9.205204e-05	ci right 1.131957e-04	k: 369	n:3610000
PCDHA10   3610000 perm   5763 sec   (626 perm/sec)   p_kst 1.022161e-04   p_cons 8.673557e-01   p_joint 3.204986e-04

Joint ci ratio: 1.150271e-01	ci left: 3.022674e-04	ci right 3.394235e-04	k: 1160	n:3620000
Cons ci ratio: 8.056854e-04	ci left: 8.670123e-01	ci right 8.677114e-01	k: 3139851	n:3620000
KS ci ratio: 2.037807e-01	ci left: 9.179776e-05	ci right 1.128830e-04	k: 369	n:3620000
PCDHA10   3620000 perm   5793 sec   (625 perm/sec)   p_kst 1.019337e-04   p_cons 8.673622e-01   p_joint 3.204420e-04

Joint ci ratio: 1.150768e-01	ci left: 3.011671e-04	ci right 3.382051e-04	k: 1159	n:3630000
Cons ci ratio: 8.045774e-04	ci left: 8.670121e-01	ci right 8.677102e-01	k: 3148522	n:3630000
KS ci ratio: 2.035058e-01	ci left: 9.180630e-05	ci right 1.128615e-04	k: 370	n:3630000
PCDHA10   3630000 perm   5823 sec   (623 perm/sec)   p_kst 1.019284e-04   p_cons 8.673614e-01   p_joint 3.192837e-04

Joint ci ratio: 1.150272e-01	ci left: 3.006066e-04	ci right 3.375586e-04	k: 1160	n:3640000
Cons ci ratio: 8.034365e-04	ci left: 8.670226e-01	ci right 8.677197e-01	k: 3157232	n:3640000
KS ci ratio: 2.032321e-01	ci left: 9.181483e-05	ci right 1.128402e-04	k: 371	n:3640000
PCDHA10   3640000 perm   5853 sec   (622 perm/sec)   p_kst 1.019231e-04   p_cons 8.673714e-01   p_joint 3.186813e-04

Joint ci ratio: 1.147803e-01	ci left: 3.011135e-04	ci right 3.380430e-04	k: 1165	n:3650000
Cons ci ratio: 8.022957e-04	ci left: 8.670344e-01	ci right 8.677305e-01	k: 3165947	n:3650000
KS ci ratio: 2.026880e-01	ci left: 9.208338e-05	ci right 1.131068e-04	k: 373	n:3650000
PCDHA10   3650000 perm   5883 sec   (620 perm/sec)   p_kst 1.021918e-04   p_cons 8.673827e-01   p_joint 3.191781e-04

Joint ci ratio: 1.146820e-01	ci left: 3.008215e-04	ci right 3.376815e-04	k: 1167	n:3660000
Cons ci ratio: 8.011940e-04	ci left: 8.670363e-01	ci right 8.677315e-01	k: 3174626	n:3660000
KS ci ratio: 2.024175e-01	ci left: 9.209115e-05	ci right 1.130848e-04	k: 374	n:3660000
PCDHA10   3660000 perm   5913 sec   (619 perm/sec)   p_kst 1.021858e-04   p_cons 8.673842e-01   p_joint 3.188525e-04

Joint ci ratio: 1.148297e-01	ci left: 2.992079e-04	ci right 3.359205e-04	k: 1164	n:3670000
Cons ci ratio: 8.001309e-04	ci left: 8.670283e-01	ci right 8.677226e-01	k: 3183269	n:3670000
KS ci ratio: 2.018799e-01	ci left: 9.235760e-05	ci right 1.133492e-04	k: 376	n:3670000
PCDHA10   3670000 perm   5944 sec   (617 perm/sec)   p_kst 1.024523e-04   p_cons 8.673757e-01   p_joint 3.171662e-04

Joint ci ratio: 1.146821e-01	ci left: 2.991866e-04	ci right 3.358463e-04	k: 1167	n:3680000
Cons ci ratio: 7.990259e-04	ci left: 8.670338e-01	ci right 8.677271e-01	k: 3191961	n:3680000
KS ci ratio: 2.016127e-01	ci left: 9.236464e-05	ci right 1.133266e-04	k: 377	n:3680000
PCDHA10   3680000 perm   5974 sec   (616 perm/sec)   p_kst 1.024457e-04   p_cons 8.673807e-01   p_joint 3.171196e-04

Joint ci ratio: 1.145841e-01	ci left: 2.989023e-04	ci right 3.354937e-04	k: 1169	n:3690000
Cons ci ratio: 7.979469e-04	ci left: 8.670329e-01	ci right 8.677253e-01	k: 3200630	n:3690000
KS ci ratio: 2.016127e-01	ci left: 9.211433e-05	ci right 1.130195e-04	k: 377	n:3690000
PCDHA10   3690000 perm   6004 sec   (615 perm/sec)   p_kst 1.021680e-04   p_cons 8.673794e-01   p_joint 3.168022e-04

Joint ci ratio: 1.151765e-01	ci left: 2.949444e-04	ci right 3.312506e-04	k: 1157	n:3700000
Cons ci ratio: 7.968565e-04	ci left: 8.670367e-01	ci right 8.677281e-01	k: 3209316	n:3700000
KS ci ratio: 2.010814e-01	ci left: 9.237866e-05	ci right 1.132818e-04	k: 379	n:3700000
PCDHA10   3700000 perm   6035 sec   (613 perm/sec)   p_kst 1.024324e-04   p_cons 8.673827e-01   p_joint 3.127027e-04

Joint ci ratio: 1.163380e-01	ci left: 2.881293e-04	ci right 3.239789e-04	k: 1134	n:3710000
Cons ci ratio: 7.957957e-04	ci left: 8.670332e-01	ci right 8.677237e-01	k: 3217975	n:3710000
KS ci ratio: 2.010814e-01	ci left: 9.212966e-05	ci right 1.129764e-04	k: 379	n:3710000
PCDHA10   3710000 perm   6065 sec   (612 perm/sec)   p_kst 1.021563e-04   p_cons 8.673787e-01   p_joint 3.056604e-04

Joint ci ratio: 1.160826e-01	ci left: 2.886598e-04	ci right 3.244911e-04	k: 1139	n:3720000
Cons ci ratio: 7.947233e-04	ci left: 8.670342e-01	ci right 8.677238e-01	k: 3226651	n:3720000
KS ci ratio: 2.010815e-01	ci left: 9.188200e-05	ci right 1.126727e-04	k: 379	n:3720000
PCDHA10   3720000 perm   6096 sec   (610 perm/sec)   p_kst 1.018817e-04   p_cons 8.673793e-01   p_joint 3.061828e-04

Joint ci ratio: 1.160317e-01	ci left: 2.881462e-04	ci right 3.238970e-04	k: 1140	n:3730000
Cons ci ratio: 7.936348e-04	ci left: 8.670412e-01	ci right 8.677298e-01	k: 3235349	n:3730000
KS ci ratio: 2.010815e-01	ci left: 9.163567e-05	ci right 1.123707e-04	k: 379	n:3730000
PCDHA10   3730000 perm   6127 sec   (609 perm/sec)   p_kst 1.016086e-04   p_cons 8.673858e-01   p_joint 3.056300e-04

Joint ci ratio: 1.174827e-01	ci left: 2.801077e-04	ci right 3.153259e-04	k: 1112	n:3740000
Cons ci ratio: 7.925629e-04	ci left: 8.670446e-01	ci right 8.677323e-01	k: 3244034	n:3740000
KS ci ratio: 2.008174e-01	ci left: 9.164458e-05	ci right 1.123510e-04	k: 380	n:3740000
PCDHA10   3740000 perm   6158 sec   (607 perm/sec)   p_kst 1.016043e-04   p_cons 8.673888e-01   p_joint 2.973262e-04

Joint ci ratio: 1.173773e-01	ci left: 2.798784e-04	ci right 3.150341e-04	k: 1114	n:3750000
Cons ci ratio: 7.914906e-04	ci left: 8.670494e-01	ci right 8.677362e-01	k: 3252724	n:3750000
KS ci ratio: 2.005544e-01	ci left: 9.165346e-05	ci right 1.123315e-04	k: 381	n:3750000
PCDHA10   3750000 perm   6189 sec   (606 perm/sec)   p_kst 1.016000e-04   p_cons 8.673931e-01   p_joint 2.970667e-04

Joint ci ratio: 1.273668e-01	ci left: 2.358183e-04	ci right 2.681510e-04	k: 946	n:3760000
Cons ci ratio: 8.285252e-04	ci left: 8.558327e-01	ci right 8.565423e-01	k: 3219266	n:3760000
KS ci ratio: 2.005544e-01	ci left: 9.140970e-05	ci right 1.120327e-04	k: 381	n:3760000
PCDHA10   3760000 perm   6221 sec   (604 perm/sec)   p_kst 1.013298e-04   p_cons 8.561878e-01   p_joint 2.515957e-04

Joint ci ratio: 1.270987e-01	ci left: 2.362200e-04	ci right 2.685345e-04	k: 950	n:3770000
Cons ci ratio: 8.273970e-04	ci left: 8.558417e-01	ci right 8.565503e-01	k: 3227860	n:3770000
KS ci ratio: 1.995125e-01	ci left: 9.217511e-05	ci right 1.128496e-04	k: 385	n:3770000
PCDHA10   3770000 perm   6253 sec   (603 perm/sec)   p_kst 1.021220e-04   p_cons 8.561963e-01   p_joint 2.519894e-04

Joint ci ratio: 1.268322e-01	ci left: 2.366197e-04	ci right 2.689159e-04	k: 954	n:3780000
Cons ci ratio: 8.263373e-04	ci left: 8.558316e-01	ci right 8.565393e-01	k: 3236382	n:3780000
KS ci ratio: 1.992546e-01	ci left: 9.218260e-05	ci right 1.128288e-04	k: 386	n:3780000
PCDHA10   3780000 perm   6283 sec   (602 perm/sec)   p_kst 1.021164e-04   p_cons 8.561857e-01   p_joint 2.523810e-04

Joint ci ratio: 1.265014e-01	ci left: 2.372728e-04	ci right 2.695674e-04	k: 959	n:3790000
Cons ci ratio: 8.252100e-04	ci left: 8.558429e-01	ci right 8.565497e-01	k: 3244985	n:3790000
KS ci ratio: 1.984867e-01	ci left: 9.269152e-05	ci right 1.133620e-04	k: 389	n:3790000
PCDHA10   3790000 perm   6315 sec   (600 perm/sec)   p_kst 1.026385e-04   p_cons 8.561966e-01   p_joint 2.530343e-04

Joint ci ratio: 1.262387e-01	ci left: 2.376678e-04	ci right 2.699439e-04	k: 963	n:3800000
Cons ci ratio: 8.241006e-04	ci left: 8.558502e-01	ci right 8.565561e-01	k: 3253573	n:3800000
KS ci ratio: 1.982327e-01	ci left: 9.269768e-05	ci right 1.133399e-04	k: 390	n:3800000
PCDHA10   3800000 perm   6345 sec   (599 perm/sec)   p_kst 1.026316e-04   p_cons 8.562034e-01   p_joint 2.534211e-04

Joint ci ratio: 1.261079e-01	ci left: 2.375523e-04	ci right 2.697769e-04	k: 965	n:3810000
Cons ci ratio: 8.230158e-04	ci left: 8.558515e-01	ci right 8.565564e-01	k: 3262138	n:3810000
KS ci ratio: 1.982327e-01	ci left: 9.245438e-05	ci right 1.130425e-04	k: 390	n:3810000
PCDHA10   3810000 perm   6377 sec   (597 perm/sec)   p_kst 1.023622e-04   p_cons 8.562042e-01   p_joint 2.532808e-04

Joint ci ratio: 1.259126e-01	ci left: 2.376911e-04	ci right 2.698807e-04	k: 968	n:3820000
Cons ci ratio: 8.219309e-04	ci left: 8.558540e-01	ci right 8.565580e-01	k: 3270708	n:3820000
KS ci ratio: 1.977276e-01	ci left: 9.270996e-05	ci right 1.132960e-04	k: 392	n:3820000
PCDHA10   3820000 perm   6408 sec   (596 perm/sec)   p_kst 1.026178e-04   p_cons 8.562063e-01   p_joint 2.534031e-04

Joint ci ratio: 1.258477e-01	ci left: 2.373233e-04	ci right 2.694454e-04	k: 969	n:3830000
Cons ci ratio: 8.208450e-04	ci left: 8.558581e-01	ci right 8.565612e-01	k: 3279284	n:3830000
KS ci ratio: 1.974766e-01	ci left: 9.271608e-05	ci right 1.132742e-04	k: 393	n:3830000
PCDHA10   3830000 perm   6439 sec   (595 perm/sec)   p_kst 1.026110e-04   p_cons 8.562099e-01   p_joint 2.530026e-04

Joint ci ratio: 1.257829e-01	ci left: 2.369575e-04	ci right 2.690123e-04	k: 970	n:3840000
Cons ci ratio: 8.197401e-04	ci left: 8.558692e-01	ci right 8.565714e-01	k: 3287887	n:3840000
KS ci ratio: 1.972264e-01	ci left: 9.272218e-05	ci right 1.132525e-04	k: 394	n:3840000
PCDHA10   3840000 perm   6470 sec   (593 perm/sec)   p_kst 1.026042e-04   p_cons 8.562206e-01   p_joint 2.526042e-04

Joint ci ratio: 1.257182e-01	ci left: 2.365936e-04	ci right 2.685815e-04	k: 971	n:3850000
Cons ci ratio: 8.186525e-04	ci left: 8.558764e-01	ci right 8.565776e-01	k: 3296475	n:3850000
KS ci ratio: 1.969773e-01	ci left: 9.272827e-05	ci right 1.132309e-04	k: 395	n:3850000
PCDHA10   3850000 perm   6501 sec   (592 perm/sec)   p_kst 1.025974e-04   p_cons 8.562273e-01   p_joint 2.522078e-04

Joint ci ratio: 1.255890e-01	ci left: 2.364825e-04	ci right 2.684201e-04	k: 973	n:3860000
Cons ci ratio: 8.176690e-04	ci left: 8.558535e-01	ci right 8.565538e-01	k: 3304947	n:3860000
KS ci ratio: 1.967290e-01	ci left: 9.273434e-05	ci right 1.132093e-04	k: 396	n:3860000
PCDHA10   3860000 perm   6533 sec   (591 perm/sec)   p_kst 1.025907e-04   p_cons 8.562039e-01   p_joint 2.520725e-04

Joint ci ratio: 1.254603e-01	ci left: 2.363720e-04	ci right 2.682595e-04	k: 975	n:3870000
Cons ci ratio: 8.165905e-04	ci left: 8.558604e-01	ci right 8.565598e-01	k: 3313534	n:3870000
KS ci ratio: 1.964817e-01	ci left: 9.274039e-05	ci right 1.131879e-04	k: 397	n:3870000
PCDHA10   3870000 perm   6565 sec   (589 perm/sec)   p_kst 1.025840e-04   p_cons 8.562103e-01   p_joint 2.519380e-04

Joint ci ratio: 1.253961e-01	ci left: 2.360125e-04	ci right 2.678339e-04	k: 976	n:3880000
Cons ci ratio: 8.155317e-04	ci left: 8.558626e-01	ci right 8.565611e-01	k: 3322103	n:3880000
KS ci ratio: 1.964817e-01	ci left: 9.250137e-05	ci right 1.128962e-04	k: 397	n:3880000
PCDHA10   3880000 perm   6598 sec   (588 perm/sec)   p_kst 1.023196e-04   p_cons 8.562121e-01   p_joint 2.515464e-04

Joint ci ratio: 1.252680e-01	ci left: 2.359038e-04	ci right 2.676757e-04	k: 978	n:3890000
Cons ci ratio: 8.144999e-04	ci left: 8.558579e-01	ci right 8.565555e-01	k: 3330645	n:3890000
KS ci ratio: 1.964818e-01	ci left: 9.226358e-05	ci right 1.126060e-04	k: 397	n:3890000
PCDHA10   3890000 perm   6630 sec   (587 perm/sec)   p_kst 1.020566e-04   p_cons 8.562069e-01   p_joint 2.514139e-04

Joint ci ratio: 1.250128e-01	ci left: 2.362924e-04	ci right 2.680471e-04	k: 982	n:3900000
Cons ci ratio: 8.134448e-04	ci left: 8.558614e-01	ci right 8.565581e-01	k: 3339219	n:3900000
KS ci ratio: 1.964818e-01	ci left: 9.202700e-05	ci right 1.123172e-04	k: 397	n:3900000
PCDHA10   3900000 perm   6663 sec   (585 perm/sec)   p_kst 1.017949e-04   p_cons 8.562100e-01   p_joint 2.517949e-04

Joint ci ratio: 1.248225e-01	ci left: 2.364314e-04	ci right 2.681527e-04	k: 985	n:3910000
Cons ci ratio: 8.124142e-04	ci left: 8.558587e-01	ci right 8.565546e-01	k: 3347769	n:3910000
KS ci ratio: 1.962354e-01	ci left: 9.203482e-05	ci right 1.122983e-04	k: 398	n:3910000
PCDHA10   3910000 perm   6695 sec   (584 perm/sec)   p_kst 1.017903e-04   p_cons 8.562069e-01   p_joint 2.519182e-04

Joint ci ratio: 1.246961e-01	ci left: 2.363225e-04	ci right 2.679948e-04	k: 987	n:3920000
Cons ci ratio: 8.114261e-04	ci left: 8.558443e-01	ci right 8.565393e-01	k: 3356273	n:3920000
KS ci ratio: 1.957454e-01	ci left: 9.228521e-05	ci right 1.125470e-04	k: 400	n:3920000
PCDHA10   3920000 perm   6728 sec   (583 perm/sec)   p_kst 1.020408e-04   p_cons 8.561921e-01   p_joint 2.517857e-04

Joint ci ratio: 1.245701e-01	ci left: 2.362142e-04	ci right 2.678376e-04	k: 989	n:3930000
Cons ci ratio: 8.103771e-04	ci left: 8.558496e-01	ci right 8.565437e-01	k: 3364854	n:3930000
KS ci ratio: 1.957454e-01	ci left: 9.205038e-05	ci right 1.122606e-04	k: 400	n:3930000
PCDHA10   3930000 perm   6762 sec   (581 perm/sec)   p_kst 1.017812e-04   p_cons 8.561969e-01   p_joint 2.516539e-04

Joint ci ratio: 1.243191e-01	ci left: 2.365983e-04	ci right 2.682047e-04	k: 993	n:3940000
Cons ci ratio: 8.092729e-04	ci left: 8.558730e-01	ci right 8.565661e-01	k: 3373506	n:3940000
KS ci ratio: 1.955018e-01	ci left: 9.205813e-05	ci right 1.122419e-04	k: 401	n:3940000
PCDHA10   3940000 perm   6795 sec   (580 perm/sec)   p_kst 1.017766e-04   p_cons 8.562198e-01   p_joint 2.520305e-04

Joint ci ratio: 1.242567e-01	ci left: 2.362446e-04	ci right 2.677867e-04	k: 994	n:3950000
Cons ci ratio: 8.082522e-04	ci left: 8.558721e-01	ci right 8.565644e-01	k: 3382063	n:3950000
KS ci ratio: 1.952591e-01	ci left: 9.206585e-05	ci right 1.122233e-04	k: 402	n:3950000
PCDHA10   3950000 perm   6828 sec   (579 perm/sec)   p_kst 1.017722e-04   p_cons 8.562185e-01   p_joint 2.516456e-04

Joint ci ratio: 1.241943e-01	ci left: 2.358927e-04	ci right 2.673708e-04	k: 995	n:3960000
Cons ci ratio: 8.072494e-04	ci left: 8.558669e-01	ci right 8.565583e-01	k: 3390603	n:3960000
KS ci ratio: 1.950173e-01	ci left: 9.207355e-05	ci right 1.122048e-04	k: 403	n:3960000
PCDHA10   3960000 perm   6862 sec   (577 perm/sec)   p_kst 1.017677e-04   p_cons 8.562129e-01   p_joint 2.512626e-04

Joint ci ratio: 1.240077e-01	ci left: 2.360308e-04	ci right 2.674765e-04	k: 998	n:3970000
Cons ci ratio: 8.062322e-04	ci left: 8.558673e-01	ci right 8.565579e-01	k: 3399165	n:3970000
KS ci ratio: 1.945364e-01	ci left: 9.232084e-05	ci right 1.124505e-04	k: 405	n:3970000
PCDHA10   3970000 perm   6895 sec   (576 perm/sec)   p_kst 1.020151e-04   p_cons 8.562128e-01   p_joint 2.513854e-04

Joint ci ratio: 1.238219e-01	ci left: 2.361681e-04	ci right 2.675815e-04	k: 1001	n:3980000
Cons ci ratio: 8.052607e-04	ci left: 8.558549e-01	ci right 8.565446e-01	k: 3407676	n:3980000
KS ci ratio: 1.945364e-01	ci left: 9.208888e-05	ci right 1.121679e-04	k: 405	n:3980000
PCDHA10   3980000 perm   6929 sec   (574 perm/sec)   p_kst 1.017588e-04   p_cons 8.562000e-01   p_joint 2.515075e-04

Joint ci ratio: 1.238219e-01	ci left: 2.355762e-04	ci right 2.669109e-04	k: 1001	n:3990000
Cons ci ratio: 8.042412e-04	ci left: 8.558583e-01	ci right 8.565472e-01	k: 3416250	n:3990000
KS ci ratio: 1.945364e-01	ci left: 9.185808e-05	ci right 1.118868e-04	k: 405	n:3990000
PCDHA10   3990000 perm   6963 sec   (573 perm/sec)   p_kst 1.015038e-04   p_cons 8.562030e-01   p_joint 2.508772e-04

Joint ci ratio: 1.119371e-01	ci left: 2.893407e-04	ci right 3.238894e-04	k: 1225	n:4000000
Cons ci ratio: 8.032508e-04	ci left: 8.558540e-01	ci right 8.565420e-01	k: 3424793	n:4000000
KS ci ratio: 1.942973e-01	ci left: 9.186626e-05	ci right 1.118692e-04	k: 406	n:4000000
PCDHA10   4000000 perm   6996 sec   (572 perm/sec)   p_kst 1.015000e-04   p_cons 8.561983e-01   p_joint 3.062500e-04

Joint ci ratio: 1.020839e-01	ci left: 3.488134e-04	ci right 3.865776e-04	k: 1473	n:4010000
Cons ci ratio: 8.022583e-04	ci left: 8.558514e-01	ci right 8.565386e-01	k: 3433343	n:4010000
KS ci ratio: 1.940590e-01	ci left: 9.187443e-05	ci right 1.118517e-04	k: 407	n:4010000
PCDHA10   4010000 perm   7029 sec   (570 perm/sec)   p_kst 1.014963e-04   p_cons 8.561953e-01   p_joint 3.673317e-04

Joint ci ratio: 1.020148e-01	ci left: 3.484305e-04	ci right 3.861261e-04	k: 1475	n:4020000
Cons ci ratio: 8.012558e-04	ci left: 8.558531e-01	ci right 8.565394e-01	k: 3441910	n:4020000
KS ci ratio: 1.938216e-01	ci left: 9.188256e-05	ci right 1.118343e-04	k: 408	n:4020000
PCDHA10   4020000 perm   7062 sec   (569 perm/sec)   p_kst 1.014925e-04   p_cons 8.561965e-01   p_joint 3.669154e-04

Joint ci ratio: 1.019803e-01	ci left: 3.478077e-04	ci right 3.854225e-04	k: 1476	n:4030000
Cons ci ratio: 8.002763e-04	ci left: 8.558488e-01	ci right 8.565343e-01	k: 3450453	n:4030000
KS ci ratio: 1.935851e-01	ci left: 9.189067e-05	ci right 1.118170e-04	k: 409	n:4030000
PCDHA10   4030000 perm   7095 sec   (568 perm/sec)   p_kst 1.014888e-04   p_cons 8.561918e-01   p_joint 3.662531e-04

Joint ci ratio: 1.018769e-01	ci left: 3.476704e-04	ci right 3.852300e-04	k: 1479	n:4040000
Cons ci ratio: 7.993093e-04	ci left: 8.558419e-01	ci right 8.565264e-01	k: 3458985	n:4040000
KS ci ratio: 1.935852e-01	ci left: 9.166322e-05	ci right 1.115402e-04	k: 409	n:4040000
PCDHA10   4040000 perm   7128 sec   (567 perm/sec)   p_kst 1.012376e-04   p_cons 8.561844e-01   p_joint 3.660891e-04

Joint ci ratio: 1.017738e-01	ci left: 3.475339e-04	ci right 3.850384e-04	k: 1482	n:4050000
Cons ci ratio: 7.983618e-04	ci left: 8.558300e-01	ci right 8.565137e-01	k: 3467497	n:4050000
KS ci ratio: 1.935852e-01	ci left: 9.143689e-05	ci right 1.112648e-04	k: 409	n:4050000
PCDHA10   4050000 perm   7161 sec   (566 perm/sec)   p_kst 1.009877e-04   p_cons 8.561721e-01   p_joint 3.659259e-04

Joint ci ratio: 1.017052e-01	ci left: 3.471579e-04	ci right 3.845952e-04	k: 1484	n:4060000
Cons ci ratio: 7.973650e-04	ci left: 8.558344e-01	ci right 8.565173e-01	k: 3476075	n:4060000
KS ci ratio: 1.935852e-01	ci left: 9.121167e-05	ci right 1.109907e-04	k: 409	n:4060000
PCDHA10   4060000 perm   7195 sec   (564 perm/sec)   p_kst 1.007389e-04   p_cons 8.561761e-01   p_joint 3.655172e-04

Joint ci ratio: 1.022927e-01	ci left: 3.422346e-04	ci right 3.793668e-04	k: 1467	n:4070000
Cons ci ratio: 7.963775e-04	ci left: 8.558371e-01	ci right 8.565192e-01	k: 3484646	n:4070000
KS ci ratio: 1.935852e-01	ci left: 9.098756e-05	ci right 1.107180e-04	k: 409	n:4070000
PCDHA10   4070000 perm   7230 sec   (563 perm/sec)   p_kst 1.004914e-04   p_cons 8.561784e-01   p_joint 3.604423e-04

Joint ci ratio: 1.021883e-01	ci left: 3.421122e-04	ci right 3.791911e-04	k: 1470	n:4080000
Cons ci ratio: 7.954008e-04	ci left: 8.558376e-01	ci right 8.565188e-01	k: 3493208	n:4080000
KS ci ratio: 1.933496e-01	ci left: 9.099778e-05	ci right 1.107036e-04	k: 410	n:4080000
PCDHA10   4080000 perm   7264 sec   (562 perm/sec)   p_kst 1.004902e-04   p_cons 8.561784e-01   p_joint 3.602941e-04

Joint ci ratio: 1.020843e-01	ci left: 3.419905e-04	ci right 3.790162e-04	k: 1473	n:4090000
Cons ci ratio: 7.943984e-04	ci left: 8.558471e-01	ci right 8.565275e-01	k: 3501807	n:4090000
KS ci ratio: 1.931148e-01	ci left: 9.100796e-05	ci right 1.106893e-04	k: 411	n:4090000
PCDHA10   4090000 perm   7298 sec   (560 perm/sec)   p_kst 1.004890e-04   p_cons 8.561875e-01   p_joint 3.601467e-04

Joint ci ratio: 1.018771e-01	ci left: 3.425825e-04	ci right 3.795925e-04	k: 1479	n:4100000
Cons ci ratio: 7.934368e-04	ci left: 8.558451e-01	ci right 8.565247e-01	k: 3510359	n:4100000
KS ci ratio: 1.928809e-01	ci left: 9.101811e-05	ci right 1.106750e-04	k: 412	n:4100000
PCDHA10   4100000 perm   7332 sec   (559 perm/sec)   p_kst 1.004878e-04   p_cons 8.561851e-01   p_joint 3.607317e-04

Joint ci ratio: 1.018084e-01	ci left: 3.422232e-04	ci right 3.791679e-04	k: 1481	n:4110000
Cons ci ratio: 7.924646e-04	ci left: 8.558475e-01	ci right 8.565262e-01	k: 3518929	n:4110000
KS ci ratio: 1.928809e-01	ci left: 9.079665e-05	ci right 1.104057e-04	k: 412	n:4110000
PCDHA10   4110000 perm   7365 sec   (558 perm/sec)   p_kst 1.002433e-04   p_cons 8.561871e-01   p_joint 3.603406e-04

Joint ci ratio: 1.017055e-01	ci left: 3.421022e-04	ci right 3.789943e-04	k: 1484	n:4120000
Cons ci ratio: 7.915186e-04	ci left: 8.558428e-01	ci right 8.565207e-01	k: 3527470	n:4120000
KS ci ratio: 1.928809e-01	ci left: 9.057627e-05	ci right 1.101377e-04	k: 412	n:4120000
PCDHA10   4120000 perm   7400 sec   (557 perm/sec)   p_kst 1.000000e-04   p_cons 8.561820e-01   p_joint 3.601942e-04

Joint ci ratio: 1.016029e-01	ci left: 3.419818e-04	ci right 3.788215e-04	k: 1487	n:4130000
Cons ci ratio: 7.905324e-04	ci left: 8.558518e-01	ci right 8.565288e-01	k: 3536067	n:4130000
KS ci ratio: 1.924155e-01	ci left: 9.081787e-05	ci right 1.103786e-04	k: 414	n:4130000
PCDHA10   4130000 perm   7434 sec   (556 perm/sec)   p_kst 1.002421e-04   p_cons 8.561906e-01   p_joint 3.600484e-04

Joint ci ratio: 1.015348e-01	ci left: 3.416265e-04	ci right 3.784018e-04	k: 1489	n:4140000
Cons ci ratio: 7.895336e-04	ci left: 8.558657e-01	ci right 8.565420e-01	k: 3544685	n:4140000
KS ci ratio: 1.921841e-01	ci left: 9.082842e-05	ci right 1.103652e-04	k: 415	n:4140000
PCDHA10   4140000 perm   7470 sec   (554 perm/sec)   p_kst 1.002415e-04   p_cons 8.562041e-01   p_joint 3.596618e-04

Joint ci ratio: 1.016714e-01	ci left: 3.398640e-04	ci right 3.765017e-04	k: 1485	n:4150000
Cons ci ratio: 7.885950e-04	ci left: 8.558620e-01	ci right 8.565375e-01	k: 3553230	n:4150000
KS ci ratio: 1.917238e-01	ci left: 9.106832e-05	ci right 1.106043e-04	k: 417	n:4150000
PCDHA10   4150000 perm   7505 sec   (553 perm/sec)   p_kst 1.004819e-04   p_cons 8.562000e-01   p_joint 3.578313e-04

Joint ci ratio: 1.015348e-01	ci left: 3.399841e-04	ci right 3.765826e-04	k: 1489	n:4160000
Cons ci ratio: 7.876781e-04	ci left: 8.558526e-01	ci right 8.565272e-01	k: 3561751	n:4160000
KS ci ratio: 1.914949e-01	ci left: 9.107826e-05	ci right 1.105903e-04	k: 418	n:4160000
PCDHA10   4160000 perm   7540 sec   (552 perm/sec)   p_kst 1.004808e-04   p_cons 8.561901e-01   p_joint 3.579327e-04

Joint ci ratio: 1.014328e-01	ci left: 3.398700e-04	ci right 3.764172e-04	k: 1492	n:4170000
Cons ci ratio: 7.867383e-04	ci left: 8.558513e-01	ci right 8.565252e-01	k: 3570306	n:4170000
KS ci ratio: 1.912668e-01	ci left: 9.108817e-05	ci right 1.105764e-04	k: 419	n:4170000
PCDHA10   4170000 perm   7574 sec   (551 perm/sec)   p_kst 1.004796e-04   p_cons 8.561885e-01   p_joint 3.577938e-04

Joint ci ratio: 1.012972e-01	ci left: 3.399895e-04	ci right 3.764979e-04	k: 1496	n:4180000
Cons ci ratio: 7.858172e-04	ci left: 8.558453e-01	ci right 8.565183e-01	k: 3578841	n:4180000
KS ci ratio: 1.912668e-01	ci left: 9.087025e-05	ci right 1.103119e-04	k: 419	n:4180000
PCDHA10   4180000 perm   7607 sec   (549 perm/sec)   p_kst 1.002392e-04   p_cons 8.561821e-01   p_joint 3.578947e-04

Joint ci ratio: 1.010275e-01	ci left: 3.410391e-04	ci right 3.775569e-04	k: 1504	n:4190000
Cons ci ratio: 7.848628e-04	ci left: 8.558508e-01	ci right 8.565230e-01	k: 3587424	n:4190000
KS ci ratio: 1.910395e-01	ci left: 9.088062e-05	ci right 1.102987e-04	k: 420	n:4190000
PCDHA10   4190000 perm   7642 sec   (548 perm/sec)   p_kst 1.002387e-04   p_cons 8.561871e-01   p_joint 3.589499e-04

Joint ci ratio: 1.009940e-01	ci left: 3.404592e-04	ci right 3.769021e-04	k: 1505	n:4200000
Cons ci ratio: 7.839058e-04	ci left: 8.558581e-01	ci right 8.565295e-01	k: 3596015	n:4200000
KS ci ratio: 1.910395e-01	ci left: 9.066424e-05	ci right 1.100360e-04	k: 420	n:4200000
PCDHA10   4200000 perm   7677 sec   (547 perm/sec)   p_kst 1.000000e-04   p_cons 8.561940e-01   p_joint 3.583333e-04

Joint ci ratio: 1.009270e-01	ci left: 3.401136e-04	ci right 3.764939e-04	k: 1507	n:4210000
Cons ci ratio: 7.829705e-04	ci left: 8.558597e-01	ci right 8.565303e-01	k: 3604582	n:4210000
KS ci ratio: 1.908130e-01	ci left: 9.067506e-05	ci right 1.100235e-04	k: 421	n:4210000
PCDHA10   4210000 perm   7712 sec   (546 perm/sec)   p_kst 1.000000e-04   p_cons 8.561952e-01   p_joint 3.579572e-04

Joint ci ratio: 1.008936e-01	ci left: 3.395386e-04	ci right 3.758447e-04	k: 1508	n:4220000
Cons ci ratio: 7.820587e-04	ci left: 8.558549e-01	ci right 8.565247e-01	k: 3613122	n:4220000
KS ci ratio: 1.908131e-01	ci left: 9.046019e-05	ci right 1.097628e-04	k: 421	n:4220000
PCDHA10   4220000 perm   7746 sec   (545 perm/sec)   p_kst 9.976303e-05   p_cons 8.561900e-01   p_joint 3.573460e-04

Joint ci ratio: 1.006272e-01	ci left: 3.405795e-04	ci right 3.768950e-04	k: 1516	n:4230000
Cons ci ratio: 7.811517e-04	ci left: 8.558496e-01	ci right 8.565187e-01	k: 3621660	n:4230000
KS ci ratio: 1.908131e-01	ci left: 9.024633e-05	ci right 1.095033e-04	k: 421	n:4230000
PCDHA10   4230000 perm   7781 sec   (544 perm/sec)   p_kst 9.952719e-05   p_cons 8.561844e-01   p_joint 3.583924e-04

Joint ci ratio: 1.015352e-01	ci left: 3.335692e-04	ci right 3.694773e-04	k: 1489	n:4240000
Cons ci ratio: 7.802052e-04	ci left: 8.558579e-01	ci right 8.565261e-01	k: 3630255	n:4240000
KS ci ratio: 1.908131e-01	ci left: 9.003349e-05	ci right 1.092451e-04	k: 421	n:4240000
PCDHA10   4240000 perm   7816 sec   (542 perm/sec)   p_kst 9.929245e-05   p_cons 8.561922e-01   p_joint 3.511792e-04

Joint ci ratio: 1.012636e-01	ci left: 3.346190e-04	ci right 3.705380e-04	k: 1497	n:4250000
Cons ci ratio: 7.792420e-04	ci left: 8.558724e-01	ci right 8.565398e-01	k: 3638877	n:4250000
KS ci ratio: 1.905874e-01	ci left: 9.004571e-05	ci right 1.092345e-04	k: 422	n:4250000
PCDHA10   4250000 perm   7850 sec   (541 perm/sec)   p_kst 9.929412e-05   p_cons 8.562064e-01   p_joint 3.522353e-04

Joint ci ratio: 1.012299e-01	ci left: 3.340623e-04	ci right 3.699089e-04	k: 1498	n:4260000
Cons ci ratio: 7.783418e-04	ci left: 8.558681e-01	ci right 8.565347e-01	k: 3647419	n:4260000
KS ci ratio: 1.903625e-01	ci left: 9.005788e-05	ci right 1.092241e-04	k: 423	n:4260000
PCDHA10   4260000 perm   7885 sec   (540 perm/sec)   p_kst 9.929577e-05   p_cons 8.562016e-01   p_joint 3.516432e-04

Joint ci ratio: 1.010615e-01	ci left: 3.344213e-04	ci right 3.702432e-04	k: 1503	n:4270000
Cons ci ratio: 7.773818e-04	ci left: 8.558837e-01	ci right 8.565495e-01	k: 3656046	n:4270000
KS ci ratio: 1.901384e-01	ci left: 9.007001e-05	ci right 1.092136e-04	k: 424	n:4270000
PCDHA10   4270000 perm   7920 sec   (539 perm/sec)   p_kst 9.929742e-05   p_cons 8.562169e-01   p_joint 3.519906e-04

Joint ci ratio: 1.010279e-01	ci left: 3.338677e-04	ci right 3.696177e-04	k: 1504	n:4280000
Cons ci ratio: 7.764305e-04	ci left: 8.558976e-01	ci right 8.565626e-01	k: 3664666	n:4280000
KS ci ratio: 1.901385e-01	ci left: 8.985956e-05	ci right 1.089584e-04	k: 424	n:4280000
PCDHA10   4280000 perm   7956 sec   (538 perm/sec)   p_kst 9.906542e-05   p_cons 8.562304e-01   p_joint 3.514019e-04

Joint ci ratio: 1.009274e-01	ci left: 3.337711e-04	ci right 3.694731e-04	k: 1507	n:4290000
Cons ci ratio: 7.754709e-04	ci left: 8.559152e-01	ci right 8.565794e-01	k: 3673302	n:4290000
KS ci ratio: 1.899152e-01	ci left: 8.987211e-05	ci right 1.089486e-04	k: 425	n:4290000
PCDHA10   4290000 perm   7991 sec   (537 perm/sec)   p_kst 9.906760e-05   p_cons 8.562476e-01   p_joint 3.512821e-04

Joint ci ratio: 1.008271e-01	ci left: 3.336749e-04	ci right 3.693291e-04	k: 1510	n:4300000
Cons ci ratio: 7.745163e-04	ci left: 8.559322e-01	ci right 8.565957e-01	k: 3681936	n:4300000
KS ci ratio: 1.899152e-01	ci left: 8.966311e-05	ci right 1.086952e-04	k: 425	n:4300000
PCDHA10   4300000 perm   8025 sec   (536 perm/sec)   p_kst 9.883721e-05   p_cons 8.562642e-01   p_joint 3.511628e-04

Joint ci ratio: 1.007605e-01	ci left: 3.333531e-04	ci right 3.689479e-04	k: 1512	n:4310000
Cons ci ratio: 7.736331e-04	ci left: 8.559276e-01	ci right 8.565903e-01	k: 3690477	n:4310000
KS ci ratio: 1.896927e-01	ci left: 8.967607e-05	ci right 1.086861e-04	k: 426	n:4310000
PCDHA10   4310000 perm   8060 sec   (535 perm/sec)   p_kst 9.883991e-05   p_cons 8.562592e-01   p_joint 3.508121e-04

Joint ci ratio: 1.005944e-01	ci left: 3.337097e-04	ci right 3.692804e-04	k: 1517	n:4320000
Cons ci ratio: 7.726933e-04	ci left: 8.559420e-01	ci right 8.566038e-01	k: 3699100	n:4320000
KS ci ratio: 1.890298e-01	ci left: 9.013001e-05	ci right 1.091618e-04	k: 429	n:4320000
PCDHA10   4320000 perm   8095 sec   (534 perm/sec)   p_kst 9.930556e-05   p_cons 8.562731e-01   p_joint 3.511574e-04

Joint ci ratio: 1.004291e-01	ci left: 3.340647e-04	ci right 3.696113e-04	k: 1522	n:4330000
Cons ci ratio: 7.717923e-04	ci left: 8.559450e-01	ci right 8.566061e-01	k: 3707674	n:4330000
KS ci ratio: 1.885917e-01	ci left: 9.036192e-05	ci right 1.093934e-04	k: 431	n:4330000
PCDHA10   4330000 perm   8130 sec   (533 perm/sec)   p_kst 9.953811e-05   p_cons 8.562758e-01   p_joint 3.515012e-04

Joint ci ratio: 1.003962e-01	ci left: 3.335196e-04	ci right 3.689959e-04	k: 1523	n:4340000
Cons ci ratio: 7.709054e-04	ci left: 8.559445e-01	ci right 8.566048e-01	k: 3716233	n:4340000
KS ci ratio: 1.885917e-01	ci left: 9.015371e-05	ci right 1.091414e-04	k: 431	n:4340000
PCDHA10   4340000 perm   8165 sec   (532 perm/sec)   p_kst 9.930876e-05   p_cons 8.562749e-01   p_joint 3.509217e-04

Joint ci ratio: 1.003304e-01	ci left: 3.332011e-04	ci right 3.686189e-04	k: 1525	n:4350000
Cons ci ratio: 7.700538e-04	ci left: 8.559336e-01	ci right 8.565932e-01	k: 3724747	n:4350000
KS ci ratio: 1.883738e-01	ci left: 9.016550e-05	ci right 1.091312e-04	k: 432	n:4350000
PCDHA10   4350000 perm   8201 sec   (530 perm/sec)   p_kst 9.931034e-05   p_cons 8.562637e-01   p_joint 3.505747e-04

Joint ci ratio: 1.003304e-01	ci left: 3.324369e-04	ci right 3.677735e-04	k: 1525	n:4360000
Cons ci ratio: 7.691606e-04	ci left: 8.559371e-01	ci right 8.565959e-01	k: 3733323	n:4360000
KS ci ratio: 1.883738e-01	ci left: 8.995870e-05	ci right 1.088809e-04	k: 432	n:4360000
PCDHA10   4360000 perm   8237 sec   (529 perm/sec)   p_kst 9.908257e-05   p_cons 8.562667e-01   p_joint 3.497706e-04

Joint ci ratio: 1.001338e-01	ci left: 3.330148e-04	ci right 3.683393e-04	k: 1531	n:4370000
Cons ci ratio: 7.682613e-04	ci left: 8.559435e-01	ci right 8.566016e-01	k: 3741912	n:4370000
KS ci ratio: 1.883738e-01	ci left: 8.975284e-05	ci right 1.086317e-04	k: 432	n:4370000
PCDHA10   4370000 perm   8272 sec   (528 perm/sec)   p_kst 9.885584e-05   p_cons 8.562728e-01   p_joint 3.503432e-04

Joint ci ratio: 9.993821e-02	ci left: 3.335900e-04	ci right 3.689025e-04	k: 1537	n:4380000
Cons ci ratio: 7.674056e-04	ci left: 8.559369e-01	ci right 8.565942e-01	k: 3750444	n:4380000
KS ci ratio: 1.881567e-01	ci left: 8.976548e-05	ci right 1.086228e-04	k: 433	n:4380000
PCDHA10   4380000 perm   8306 sec   (527 perm/sec)   p_kst 9.885845e-05   p_cons 8.562658e-01   p_joint 3.509132e-04

Joint ci ratio: 9.984089e-02	ci left: 3.334965e-04	ci right 3.687626e-04	k: 1540	n:4390000
Cons ci ratio: 7.664947e-04	ci left: 8.559489e-01	ci right 8.566055e-01	k: 3759058	n:4390000
KS ci ratio: 1.879403e-01	ci left: 8.977807e-05	ci right 1.086138e-04	k: 434	n:4390000
PCDHA10   4390000 perm   8342 sec   (526 perm/sec)   p_kst 9.886105e-05   p_cons 8.562774e-01   p_joint 3.507973e-04

Joint ci ratio: 9.980854e-02	ci left: 3.329601e-04	ci right 3.681574e-04	k: 1541	n:4400000
Cons ci ratio: 7.656174e-04	ci left: 8.559512e-01	ci right 8.566070e-01	k: 3767629	n:4400000
KS ci ratio: 1.877246e-01	ci left: 8.979061e-05	ci right 1.086049e-04	k: 435	n:4400000
PCDHA10   4400000 perm   8378 sec   (525 perm/sec)   p_kst 9.886364e-05   p_cons 8.562793e-01   p_joint 3.502273e-04

Joint ci ratio: 9.961490e-02	ci left: 3.335317e-04	ci right 3.687171e-04	k: 1547	n:4410000
Cons ci ratio: 7.647522e-04	ci left: 8.559505e-01	ci right 8.566055e-01	k: 3776187	n:4410000
KS ci ratio: 1.875097e-01	ci left: 8.980311e-05	ci right 1.085961e-04	k: 436	n:4410000
PCDHA10   4410000 perm   8413 sec   (524 perm/sec)   p_kst 9.886621e-05   p_cons 8.562782e-01   p_joint 3.507937e-04

Joint ci ratio: 9.951852e-02	ci left: 3.334389e-04	ci right 3.685785e-04	k: 1550	n:4420000
Cons ci ratio: 7.639103e-04	ci left: 8.559432e-01	ci right 8.565975e-01	k: 3784716	n:4420000
KS ci ratio: 1.875097e-01	ci left: 8.959994e-05	ci right 1.083504e-04	k: 436	n:4420000
PCDHA10   4420000 perm   8449 sec   (523 perm/sec)   p_kst 9.864253e-05   p_cons 8.562706e-01   p_joint 3.506787e-04

Joint ci ratio: 9.942242e-02	ci left: 3.333466e-04	ci right 3.684405e-04	k: 1553	n:4430000
Cons ci ratio: 7.630516e-04	ci left: 8.559423e-01	ci right 8.565959e-01	k: 3793273	n:4430000
KS ci ratio: 1.872956e-01	ci left: 8.961282e-05	ci right 1.083421e-04	k: 437	n:4430000
PCDHA10   4430000 perm   8485 sec   (522 perm/sec)   p_kst 9.864560e-05   p_cons 8.562693e-01   p_joint 3.505643e-04

Joint ci ratio: 9.929470e-02	ci left: 3.334744e-04	ci right 3.685340e-04	k: 1557	n:4440000
Cons ci ratio: 7.621930e-04	ci left: 8.559423e-01	ci right 8.565951e-01	k: 3801834	n:4440000
KS ci ratio: 1.870821e-01	ci left: 8.962567e-05	ci right 1.083338e-04	k: 438	n:4440000
PCDHA10   4440000 perm   8520 sec   (521 perm/sec)   p_kst 9.864865e-05   p_cons 8.562689e-01   p_joint 3.506757e-04

Joint ci ratio: 9.939051e-02	ci left: 3.320676e-04	ci right 3.670149e-04	k: 1554	n:4450000
Cons ci ratio: 7.613172e-04	ci left: 8.559488e-01	ci right 8.566009e-01	k: 3810424	n:4450000
KS ci ratio: 1.868694e-01	ci left: 8.963846e-05	ci right 1.083256e-04	k: 439	n:4450000
PCDHA10   4450000 perm   8556 sec   (520 perm/sec)   p_kst 9.865169e-05   p_cons 8.562751e-01   p_joint 3.492135e-04

Joint ci ratio: 9.929478e-02	ci left: 3.319789e-04	ci right 3.668814e-04	k: 1557	n:4460000
Cons ci ratio: 7.604575e-04	ci left: 8.559510e-01	ci right 8.566024e-01	k: 3818995	n:4460000
KS ci ratio: 1.868694e-01	ci left: 8.943748e-05	ci right 1.080827e-04	k: 439	n:4460000
PCDHA10   4460000 perm   8592 sec   (519 perm/sec)   p_kst 9.843049e-05   p_cons 8.562769e-01   p_joint 3.491031e-04

Joint ci ratio: 9.923113e-02	ci left: 3.316726e-04	ci right 3.665191e-04	k: 1559	n:4470000
Cons ci ratio: 7.596401e-04	ci left: 8.559404e-01	ci right 8.565911e-01	k: 3827509	n:4470000
KS ci ratio: 1.866574e-01	ci left: 8.945065e-05	ci right 1.080751e-04	k: 440	n:4470000
PCDHA10   4470000 perm   8628 sec   (518 perm/sec)   p_kst 9.843400e-05   p_cons 8.562660e-01   p_joint 3.487696e-04

Joint ci ratio: 9.907247e-02	ci left: 3.320206e-04	ci right 3.668448e-04	k: 1564	n:4480000
Cons ci ratio: 7.587963e-04	ci left: 8.559393e-01	ci right 8.565892e-01	k: 3836065	n:4480000
KS ci ratio: 1.864462e-01	ci left: 8.946377e-05	ci right 1.080675e-04	k: 441	n:4480000
PCDHA10   4480000 perm   8665 sec   (517 perm/sec)   p_kst 9.843750e-05   p_cons 8.562645e-01   p_joint 3.491071e-04

Joint ci ratio: 9.907251e-02	ci left: 3.312812e-04	ci right 3.660277e-04	k: 1564	n:4490000
Cons ci ratio: 7.579788e-04	ci left: 8.559306e-01	ci right 8.565798e-01	k: 3844587	n:4490000
KS ci ratio: 1.864462e-01	ci left: 8.926452e-05	ci right 1.078268e-04	k: 441	n:4490000
PCDHA10   4490000 perm   8701 sec   (516 perm/sec)   p_kst 9.821826e-05   p_cons 8.562555e-01   p_joint 3.483296e-04

Joint ci ratio: 9.900928e-02	ci left: 3.309784e-04	ci right 3.656698e-04	k: 1566	n:4500000
Cons ci ratio: 7.571481e-04	ci left: 8.559271e-01	ci right 8.565756e-01	k: 3853132	n:4500000
KS ci ratio: 1.864462e-01	ci left: 8.906615e-05	ci right 1.075872e-04	k: 441	n:4500000
PCDHA10   4500000 perm   8737 sec   (515 perm/sec)   p_kst 9.800000e-05   p_cons 8.562516e-01   p_joint 3.480000e-04

Joint ci ratio: 9.891464e-02	ci left: 3.308933e-04	ci right 3.655406e-04	k: 1569	n:4510000
Cons ci ratio: 7.563324e-04	ci left: 8.559195e-01	ci right 8.565674e-01	k: 3861659	n:4510000
KS ci ratio: 1.864462e-01	ci left: 8.886867e-05	ci right 1.073486e-04	k: 441	n:4510000
PCDHA10   4510000 perm   8774 sec   (514 perm/sec)   p_kst 9.778271e-05   p_cons 8.562437e-01   p_joint 3.478936e-04

Joint ci ratio: 9.907262e-02	ci left: 3.290824e-04	ci right 3.635984e-04	k: 1564	n:4520000
Cons ci ratio: 7.555357e-04	ci left: 8.559067e-01	ci right 8.565539e-01	k: 3870162	n:4520000
KS ci ratio: 1.864462e-01	ci left: 8.867205e-05	ci right 1.071111e-04	k: 441	n:4520000
PCDHA10   4520000 perm   8817 sec   (513 perm/sec)   p_kst 9.756637e-05   p_cons 8.562305e-01   p_joint 3.460177e-04

Joint ci ratio: 9.894625e-02	ci left: 3.292171e-04	ci right 3.637006e-04	k: 1568	n:4530000
Cons ci ratio: 7.547164e-04	ci left: 8.559022e-01	ci right 8.565486e-01	k: 3878702	n:4530000
KS ci ratio: 1.862357e-01	ci left: 8.868676e-05	ci right 1.071057e-04	k: 442	n:4530000
PCDHA10   4530000 perm   8854 sec   (512 perm/sec)   p_kst 9.757174e-05   p_cons 8.562256e-01   p_joint 3.461369e-04

Joint ci ratio: 9.882035e-02	ci left: 3.293512e-04	ci right 3.638023e-04	k: 1572	n:4540000
Cons ci ratio: 7.538869e-04	ci left: 8.559018e-01	ci right 8.565475e-01	k: 3887261	n:4540000
KS ci ratio: 1.858167e-01	ci left: 8.891143e-05	ci right 1.073308e-04	k: 444	n:4540000
PCDHA10   4540000 perm   8891 sec   (511 perm/sec)   p_kst 9.779736e-05   p_cons 8.562249e-01   p_joint 3.462555e-04

Joint ci ratio: 9.875761e-02	ci left: 3.290560e-04	ci right 3.634532e-04	k: 1574	n:4550000
Cons ci ratio: 7.530676e-04	ci left: 8.558990e-01	ci right 8.565440e-01	k: 3895809	n:4550000
KS ci ratio: 1.854005e-01	ci left: 8.913516e-05	ci right 1.075549e-04	k: 446	n:4550000
PCDHA10   4550000 perm   8928 sec   (510 perm/sec)   p_kst 9.802198e-05   p_cons 8.562218e-01   p_joint 3.459341e-04

Joint ci ratio: 9.860121e-02	ci left: 3.294039e-04	ci right 3.637797e-04	k: 1579	n:4560000
Cons ci ratio: 7.522208e-04	ci left: 8.559061e-01	ci right 8.565504e-01	k: 3904402	n:4560000
KS ci ratio: 1.851935e-01	ci left: 8.914882e-05	ci right 1.075485e-04	k: 447	n:4560000
PCDHA10   4560000 perm   8965 sec   (509 perm/sec)   p_kst 9.802632e-05   p_cons 8.562285e-01   p_joint 3.462719e-04

Joint ci ratio: 9.847662e-02	ci left: 3.295368e-04	ci right 3.638805e-04	k: 1583	n:4570000
Cons ci ratio: 7.514276e-04	ci left: 8.558966e-01	ci right 8.565402e-01	k: 3912919	n:4570000
KS ci ratio: 1.845765e-01	ci left: 8.957982e-05	ci right 1.080000e-04	k: 450	n:4570000
PCDHA10   4570000 perm   9005 sec   (508 perm/sec)   p_kst 9.846827e-05   p_cons 8.562186e-01   p_joint 3.463895e-04

Joint ci ratio: 9.832155e-02	ci left: 3.298821e-04	ci right 3.642045e-04	k: 1588	n:4580000
Cons ci ratio: 7.506475e-04	ci left: 8.558836e-01	ci right 8.565265e-01	k: 3921420	n:4580000
KS ci ratio: 1.839656e-01	ci left: 9.000904e-05	ci right 1.084494e-04	k: 453	n:4580000
PCDHA10   4580000 perm   9042 sec   (507 perm/sec)   p_kst 9.890830e-05   p_cons 8.562052e-01   p_joint 3.467249e-04

Joint ci ratio: 9.819803e-02	ci left: 3.300134e-04	ci right 3.643039e-04	k: 1592	n:4590000
Cons ci ratio: 7.498042e-04	ci left: 8.558922e-01	ci right 8.565344e-01	k: 3930020	n:4590000
KS ci ratio: 1.837633e-01	ci left: 9.002078e-05	ci right 1.084410e-04	k: 454	n:4590000
PCDHA10   4590000 perm   9079 sec   (506 perm/sec)   p_kst 9.891068e-05   p_cons 8.562135e-01   p_joint 3.468410e-04

Joint ci ratio: 9.813646e-02	ci left: 3.297201e-04	ci right 3.639574e-04	k: 1594	n:4600000
Cons ci ratio: 7.489591e-04	ci left: 8.559023e-01	ci right 8.565438e-01	k: 3938627	n:4600000
KS ci ratio: 1.837633e-01	ci left: 8.982508e-05	ci right 1.082052e-04	k: 454	n:4600000
PCDHA10   4600000 perm   9116 sec   (505 perm/sec)   p_kst 9.869565e-05   p_cons 8.562233e-01   p_joint 3.465217e-04

Joint ci ratio: 9.804430e-02	ci left: 3.296397e-04	ci right 3.638347e-04	k: 1597	n:4610000
Cons ci ratio: 7.481465e-04	ci left: 8.559026e-01	ci right 8.565434e-01	k: 3947189	n:4610000
KS ci ratio: 1.837633e-01	ci left: 8.963023e-05	ci right 1.079705e-04	k: 454	n:4610000
PCDHA10   4610000 perm   9154 sec   (504 perm/sec)   p_kst 9.848156e-05   p_cons 8.562232e-01   p_joint 3.464208e-04

Joint ci ratio: 9.804434e-02	ci left: 3.289262e-04	ci right 3.630471e-04	k: 1597	n:4620000
Cons ci ratio: 7.473096e-04	ci left: 8.559118e-01	ci right 8.565518e-01	k: 3955792	n:4620000
KS ci ratio: 1.837634e-01	ci left: 8.943622e-05	ci right 1.077368e-04	k: 454	n:4620000
PCDHA10   4620000 perm   9192 sec   (503 perm/sec)   p_kst 9.826840e-05   p_cons 8.562320e-01   p_joint 3.456710e-04

Joint ci ratio: 9.835270e-02	ci left: 3.261089e-04	ci right 3.600502e-04	k: 1587	n:4630000
Cons ci ratio: 7.464951e-04	ci left: 8.559144e-01	ci right 8.565538e-01	k: 3964365	n:4630000
KS ci ratio: 1.835618e-01	ci left: 8.944911e-05	ci right 1.077300e-04	k: 455	n:4630000
PCDHA10   4630000 perm   9229 sec   (502 perm/sec)   p_kst 9.827214e-05   p_cons 8.562343e-01   p_joint 3.427646e-04

Joint ci ratio: 9.829084e-02	ci left: 3.258266e-04	ci right 3.597159e-04	k: 1589	n:4640000
Cons ci ratio: 7.457218e-04	ci left: 8.559043e-01	ci right 8.565431e-01	k: 3972879	n:4640000
KS ci ratio: 1.835618e-01	ci left: 8.925633e-05	ci right 1.074978e-04	k: 455	n:4640000
PCDHA10   4640000 perm   9267 sec   (501 perm/sec)   p_kst 9.806034e-05   p_cons 8.562239e-01   p_joint 3.424569e-04

Joint ci ratio: 9.857034e-02	ci left: 3.232380e-04	ci right 3.569592e-04	k: 1580	n:4650000
Cons ci ratio: 7.448865e-04	ci left: 8.559156e-01	ci right 8.565536e-01	k: 3981492	n:4650000
KS ci ratio: 1.831605e-01	ci left: 8.947475e-05	ci right 1.077165e-04	k: 457	n:4650000
PCDHA10   4650000 perm   9308 sec   (500 perm/sec)   p_kst 9.827957e-05   p_cons 8.562348e-01   p_joint 3.397849e-04

Joint ci ratio: 9.847695e-02	ci left: 3.231723e-04	ci right 3.568528e-04	k: 1583	n:4660000
Cons ci ratio: 7.441409e-04	ci left: 8.558981e-01	ci right 8.565354e-01	k: 3989971	n:4660000
KS ci ratio: 1.831605e-01	ci left: 8.928274e-05	ci right 1.074853e-04	k: 457	n:4660000
PCDHA10   4660000 perm   9345 sec   (499 perm/sec)   p_kst 9.806867e-05   p_cons 8.562170e-01   p_joint 3.396996e-04

Joint ci ratio: 9.835284e-02	ci left: 3.233157e-04	ci right 3.569663e-04	k: 1587	n:4670000
Cons ci ratio: 7.433186e-04	ci left: 8.559067e-01	ci right 8.565434e-01	k: 3998572	n:4670000
KS ci ratio: 1.831606e-01	ci left: 8.909156e-05	ci right 1.072552e-04	k: 457	n:4670000
PCDHA10   4670000 perm   9390 sec   (497 perm/sec)   p_kst 9.785867e-05   p_cons 8.562253e-01   p_joint 3.398287e-04

Joint ci ratio: 9.894680e-02	ci left: 3.186651e-04	ci right 3.520436e-04	k: 1568	n:4680000
Cons ci ratio: 7.425133e-04	ci left: 8.559106e-01	ci right 8.565466e-01	k: 4007151	n:4680000
KS ci ratio: 1.827619e-01	ci left: 8.930897e-05	ci right 1.074729e-04	k: 459	n:4680000
PCDHA10   4680000 perm   9432 sec   (496 perm/sec)   p_kst 9.807692e-05   p_cons 8.562288e-01   p_joint 3.350427e-04

Joint ci ratio: 9.891530e-02	ci left: 3.181936e-04	ci right 3.515115e-04	k: 1569	n:4690000
Cons ci ratio: 7.417195e-04	ci left: 8.559116e-01	ci right 8.565468e-01	k: 4015716	n:4690000
KS ci ratio: 1.825636e-01	ci left: 8.932202e-05	ci right 1.074667e-04	k: 460	n:4690000
PCDHA10   4690000 perm   9475 sec   (495 perm/sec)   p_kst 9.808102e-05   p_cons 8.562294e-01   p_joint 3.345416e-04

Joint ci ratio: 9.901001e-02	ci left: 3.168941e-04	ci right 3.501095e-04	k: 1566	n:4700000
Cons ci ratio: 7.409424e-04	ci left: 8.559078e-01	ci right 8.565424e-01	k: 4024259	n:4700000
KS ci ratio: 1.825636e-01	ci left: 8.913197e-05	ci right 1.072381e-04	k: 460	n:4700000
PCDHA10   4700000 perm   9514 sec   (494 perm/sec)   p_kst 9.787234e-05   p_cons 8.562253e-01   p_joint 3.331915e-04

Joint ci ratio: 9.888388e-02	ci left: 3.170495e-04	ci right 3.502364e-04	k: 1570	n:4710000
Cons ci ratio: 7.401722e-04	ci left: 8.559026e-01	ci right 8.565365e-01	k: 4032795	n:4710000
KS ci ratio: 1.825636e-01	ci left: 8.894273e-05	ci right 1.070104e-04	k: 460	n:4710000
PCDHA10   4710000 perm   9561 sec   (493 perm/sec)   p_kst 9.766454e-05   p_cons 8.562197e-01   p_joint 3.333333e-04

Joint ci ratio: 9.882101e-02	ci left: 3.167911e-04	ci right 3.499286e-04	k: 1572	n:4720000
Cons ci ratio: 7.394126e-04	ci left: 8.558946e-01	ci right 8.565279e-01	k: 4041318	n:4720000
KS ci ratio: 1.825637e-01	ci left: 8.875429e-05	ci right 1.067837e-04	k: 460	n:4720000
PCDHA10   4720000 perm   9612 sec   (491 perm/sec)   p_kst 9.745763e-05   p_cons 8.562114e-01   p_joint 3.330508e-04

Joint ci ratio: 9.882104e-02	ci left: 3.161213e-04	ci right 3.491888e-04	k: 1572	n:4730000
Cons ci ratio: 7.386256e-04	ci left: 8.558966e-01	ci right 8.565292e-01	k: 4049888	n:4730000
KS ci ratio: 1.825637e-01	ci left: 8.856665e-05	ci right 1.065579e-04	k: 460	n:4730000
PCDHA10   4730000 perm   9663 sec   (489 perm/sec)   p_kst 9.725159e-05   p_cons 8.562131e-01   p_joint 3.323467e-04

Joint ci ratio: 9.872695e-02	ci left: 3.160717e-04	ci right 3.491007e-04	k: 1575	n:4740000
Cons ci ratio: 7.378954e-04	ci left: 8.558804e-01	ci right 8.565124e-01	k: 4058372	n:4740000
KS ci ratio: 1.821689e-01	ci left: 8.878248e-05	ci right 1.067743e-04	k: 462	n:4740000
PCDHA10   4740000 perm   9708 sec   (488 perm/sec)   p_kst 9.746835e-05   p_cons 8.561966e-01   p_joint 3.322785e-04

Joint ci ratio: 9.916858e-02	ci left: 3.125318e-04	ci right 3.453455e-04	k: 1561	n:4750000
Cons ci ratio: 7.371409e-04	ci left: 8.558732e-01	ci right 8.565045e-01	k: 4066898	n:4750000
KS ci ratio: 1.817767e-01	ci left: 8.899744e-05	ci right 1.069897e-04	k: 464	n:4750000
PCDHA10   4750000 perm   9761 sec   (487 perm/sec)   p_kst 9.768421e-05   p_cons 8.561891e-01   p_joint 3.286316e-04

Joint ci ratio: 9.901022e-02	ci left: 3.128996e-04	ci right 3.456964e-04	k: 1566	n:4760000
Cons ci ratio: 7.363592e-04	ci left: 8.558758e-01	ci right 8.565065e-01	k: 4075471	n:4760000
KS ci ratio: 1.811931e-01	ci left: 8.941210e-05	ci right 1.074238e-04	k: 467	n:4760000
PCDHA10   4760000 perm   9818 sec   (485 perm/sec)   p_kst 9.810924e-05   p_cons 8.561914e-01   p_joint 3.289916e-04

Joint ci ratio: 9.894711e-02	ci left: 3.126526e-04	ci right 3.454013e-04	k: 1568	n:4770000
Cons ci ratio: 7.355600e-04	ci left: 8.558852e-01	ci right 8.565152e-01	k: 4084076	n:4770000
KS ci ratio: 1.811932e-01	ci left: 8.922465e-05	ci right 1.071986e-04	k: 467	n:4770000
PCDHA10   4770000 perm   9865 sec   (484 perm/sec)   p_kst 9.790356e-05   p_cons 8.562004e-01   p_joint 3.287212e-04

Joint ci ratio: 9.878981e-02	ci left: 3.130186e-04	ci right 3.457506e-04	k: 1573	n:4780000
Cons ci ratio: 7.347764e-04	ci left: 8.558901e-01	ci right 8.565195e-01	k: 4092660	n:4780000
KS ci ratio: 1.811932e-01	ci left: 8.903799e-05	ci right 1.069743e-04	k: 467	n:4780000
PCDHA10   4780000 perm   9917 sec   (482 perm/sec)   p_kst 9.769874e-05   p_cons 8.562050e-01   p_joint 3.290795e-04

Joint ci ratio: 9.888415e-02	ci left: 3.117543e-04	ci right 3.443870e-04	k: 1570	n:4790000
Cons ci ratio: 7.339997e-04	ci left: 8.558936e-01	ci right 8.565223e-01	k: 4101237	n:4790000
KS ci ratio: 1.811932e-01	ci left: 8.885210e-05	ci right 1.067510e-04	k: 467	n:4790000
PCDHA10   4790000 perm   9965 sec   (481 perm/sec)   p_kst 9.749478e-05   p_cons 8.562081e-01   p_joint 3.277662e-04

Joint ci ratio: 9.869583e-02	ci left: 3.123239e-04	ci right 3.449504e-04	k: 1576	n:4800000
Cons ci ratio: 7.332447e-04	ci left: 8.558906e-01	ci right 8.565186e-01	k: 4109783	n:4800000
KS ci ratio: 1.809999e-01	ci left: 8.886588e-05	ci right 1.067464e-04	k: 468	n:4800000
PCDHA10   4800000 perm   10011 sec   (479 perm/sec)   p_kst 9.750000e-05   p_cons 8.562048e-01   p_joint 3.283333e-04

Joint ci ratio: 9.888422e-02	ci left: 3.104580e-04	ci right 3.429551e-04	k: 1570	n:4810000
Cons ci ratio: 7.324982e-04	ci left: 8.558855e-01	ci right 8.565128e-01	k: 4118319	n:4810000
KS ci ratio: 1.808073e-01	ci left: 8.887962e-05	ci right 1.067417e-04	k: 469	n:4810000
PCDHA10   4810000 perm   10057 sec   (478 perm/sec)   p_kst 9.750520e-05   p_cons 8.561994e-01   p_joint 3.264033e-04

Joint ci ratio: 9.878994e-02	ci left: 3.104209e-04	ci right 3.428813e-04	k: 1573	n:4820000
Cons ci ratio: 7.317417e-04	ci left: 8.558846e-01	ci right 8.565113e-01	k: 4126875	n:4820000
KS ci ratio: 1.804238e-01	ci left: 8.909140e-05	ci right 1.069539e-04	k: 471	n:4820000
PCDHA10   4820000 perm   10105 sec   (477 perm/sec)   p_kst 9.771784e-05   p_cons 8.561981e-01   p_joint 3.263485e-04

Joint ci ratio: 9.942386e-02	ci left: 3.057401e-04	ci right 3.379281e-04	k: 1553	n:4830000
Cons ci ratio: 7.309838e-04	ci left: 8.558849e-01	ci right 8.565110e-01	k: 4135437	n:4830000
KS ci ratio: 1.798531e-01	ci left: 8.950006e-05	ci right 1.073816e-04	k: 474	n:4830000
PCDHA10   4830000 perm   10147 sec   (476 perm/sec)   p_kst 9.813665e-05   p_cons 8.561981e-01   p_joint 3.215321e-04

Joint ci ratio: 9.926428e-02	ci left: 3.061158e-04	ci right 3.382886e-04	k: 1558	n:4840000
Cons ci ratio: 7.302350e-04	ci left: 8.558829e-01	ci right 8.565084e-01	k: 4143988	n:4840000
KS ci ratio: 1.792878e-01	ci left: 8.990712e-05	ci right 1.078074e-04	k: 477	n:4840000
PCDHA10   4840000 perm   10188 sec   (475 perm/sec)   p_kst 9.855372e-05   p_cons 8.561959e-01   p_joint 3.219008e-04

Joint ci ratio: 9.904214e-02	ci left: 3.068921e-04	ci right 3.390702e-04	k: 1565	n:4850000
Cons ci ratio: 7.295141e-04	ci left: 8.558723e-01	ci right 8.564971e-01	k: 4152497	n:4850000
KS ci ratio: 1.785422e-01	ci left: 9.050955e-05	ci right 1.084468e-04	k: 481	n:4850000
PCDHA10   4850000 perm   10229 sec   (474 perm/sec)   p_kst 9.917526e-05   p_cons 8.561849e-01   p_joint 3.226804e-04

Joint ci ratio: 9.882148e-02	ci left: 3.076653e-04	ci right 3.398485e-04	k: 1572	n:4860000
Cons ci ratio: 7.288197e-04	ci left: 8.558535e-01	ci right 8.564777e-01	k: 4160966	n:4860000
KS ci ratio: 1.785422e-01	ci left: 9.032332e-05	ci right 1.082236e-04	k: 481	n:4860000
PCDHA10   4860000 perm   10272 sec   (473 perm/sec)   p_kst 9.897119e-05   p_cons 8.561658e-01   p_joint 3.234568e-04

Joint ci ratio: 9.879011e-02	ci left: 3.072338e-04	ci right 3.393610e-04	k: 1573	n:4870000
Cons ci ratio: 7.280733e-04	ci left: 8.558531e-01	ci right 8.564767e-01	k: 4169524	n:4870000
KS ci ratio: 1.785423e-01	ci left: 9.013785e-05	ci right 1.080014e-04	k: 481	n:4870000
PCDHA10   4870000 perm   10311 sec   (472 perm/sec)   p_kst 9.876797e-05   p_cons 8.561651e-01   p_joint 3.229979e-04

Joint ci ratio: 9.866481e-02	ci left: 3.074037e-04	ci right 3.395055e-04	k: 1577	n:4880000
Cons ci ratio: 7.273624e-04	ci left: 8.558414e-01	ci right 8.564643e-01	k: 4178027	n:4880000
KS ci ratio: 1.779892e-01	ci left: 9.054047e-05	ci right 1.084222e-04	k: 484	n:4880000
PCDHA10   4880000 perm   10352 sec   (471 perm/sec)   p_kst 9.918033e-05   p_cons 8.561531e-01   p_joint 3.231557e-04

Joint ci ratio: 9.191964e-02	ci left: 3.546870e-04	ci right 3.890584e-04	k: 1817	n:4890000
Cons ci ratio: 7.266036e-04	ci left: 8.558467e-01	ci right 8.564690e-01	k: 4186613	n:4890000
KS ci ratio: 1.776233e-01	ci left: 9.074611e-05	ci right 1.086277e-04	k: 486	n:4890000
PCDHA10   4890000 perm   10393 sec   (471 perm/sec)   p_kst 9.938650e-05   p_cons 8.561581e-01   p_joint 3.715746e-04

Joint ci ratio: 9.227580e-02	ci left: 3.511718e-04	ci right 3.853415e-04	k: 1803	n:4900000
Cons ci ratio: 7.258850e-04	ci left: 8.558392e-01	ci right 8.564608e-01	k: 4195136	n:4900000
KS ci ratio: 1.774412e-01	ci left: 9.075593e-05	ci right 1.086191e-04	k: 487	n:4900000
PCDHA10   4900000 perm   10433 sec   (470 perm/sec)   p_kst 9.938776e-05   p_cons 8.561502e-01   p_joint 3.679592e-04

Joint ci ratio: 9.217366e-02	ci left: 3.512525e-04	ci right 3.853901e-04	k: 1807	n:4910000
Cons ci ratio: 7.251505e-04	ci left: 8.558377e-01	ci right 8.564588e-01	k: 4203689	n:4910000
KS ci ratio: 1.774412e-01	ci left: 9.057109e-05	ci right 1.083979e-04	k: 487	n:4910000
PCDHA10   4910000 perm   10474 sec   (469 perm/sec)   p_kst 9.918534e-05   p_cons 8.561485e-01   p_joint 3.680244e-04

Joint ci ratio: 9.263615e-02	ci left: 3.469645e-04	ci right 3.808638e-04	k: 1789	n:4920000
Cons ci ratio: 7.243716e-04	ci left: 8.558522e-01	ci right 8.564726e-01	k: 4212320	n:4920000
KS ci ratio: 1.772597e-01	ci left: 9.058123e-05	ci right 1.083899e-04	k: 488	n:4920000
PCDHA10   4920000 perm   10516 sec   (468 perm/sec)   p_kst 9.918699e-05   p_cons 8.561626e-01   p_joint 3.636179e-04

Joint ci ratio: 9.255862e-02	ci left: 3.468552e-04	ci right 3.807138e-04	k: 1792	n:4930000
Cons ci ratio: 7.236733e-04	ci left: 8.558400e-01	ci right 8.564598e-01	k: 4220820	n:4930000
KS ci ratio: 1.768983e-01	ci left: 9.078519e-05	ci right 1.085936e-04	k: 490	n:4930000
PCDHA10   4930000 perm   10558 sec   (467 perm/sec)   p_kst 9.939148e-05   p_cons 8.561501e-01   p_joint 3.634888e-04

Joint ci ratio: 9.237844e-02	ci left: 3.475373e-04	ci right 3.813929e-04	k: 1799	n:4940000
Cons ci ratio: 7.228932e-04	ci left: 8.558564e-01	ci right 8.564755e-01	k: 4229461	n:4940000
KS ci ratio: 1.763603e-01	ci left: 9.118186e-05	ci right 1.090079e-04	k: 493	n:4940000
PCDHA10   4940000 perm   10601 sec   (466 perm/sec)   p_kst 9.979757e-05   p_cons 8.561662e-01   p_joint 3.641700e-04

Joint ci ratio: 9.258452e-02	ci left: 3.452564e-04	ci right 3.789689e-04	k: 1791	n:4950000
Cons ci ratio: 7.221542e-04	ci left: 8.558596e-01	ci right 8.564781e-01	k: 4238037	n:4950000
KS ci ratio: 1.763603e-01	ci left: 9.099765e-05	ci right 1.087877e-04	k: 493	n:4950000
PCDHA10   4950000 perm   10643 sec   (465 perm/sec)   p_kst 9.959596e-05   p_cons 8.561691e-01   p_joint 3.618182e-04

Joint ci ratio: 9.253292e-02	ci left: 3.449542e-04	ci right 3.786174e-04	k: 1793	n:4960000
Cons ci ratio: 7.214522e-04	ci left: 8.558509e-01	ci right 8.564688e-01	k: 4246554	n:4960000
KS ci ratio: 1.761821e-01	ci left: 9.100691e-05	ci right 1.087789e-04	k: 494	n:4960000
PCDHA10   4960000 perm   10685 sec   (464 perm/sec)   p_kst 9.959677e-05   p_cons 8.561601e-01   p_joint 3.614919e-04

Joint ci ratio: 9.242993e-02	ci left: 3.450463e-04	ci right 3.786791e-04	k: 1797	n:4970000
Cons ci ratio: 7.207005e-04	ci left: 8.558600e-01	ci right 8.564772e-01	k: 4255159	n:4970000
KS ci ratio: 1.760044e-01	ci left: 9.101614e-05	ci right 1.087701e-04	k: 495	n:4970000
PCDHA10   4970000 perm   10729 sec   (463 perm/sec)   p_kst 9.959759e-05   p_cons 8.561688e-01   p_joint 3.615694e-04

Joint ci ratio: 9.232728e-02	ci left: 3.451381e-04	ci right 3.787404e-04	k: 1801	n:4980000
Cons ci ratio: 7.199781e-04	ci left: 8.558598e-01	ci right 8.564764e-01	k: 4263718	n:4980000
KS ci ratio: 1.758272e-01	ci left: 9.102533e-05	ci right 1.087613e-04	k: 496	n:4980000
PCDHA10   4980000 perm   10773 sec   (462 perm/sec)   p_kst 9.959839e-05   p_cons 8.561683e-01   p_joint 3.616466e-04

Joint ci ratio: 9.227610e-02	ci left: 3.448380e-04	ci right 3.783915e-04	k: 1803	n:4990000
Cons ci ratio: 7.192439e-04	ci left: 8.558643e-01	ci right 8.564803e-01	k: 4272301	n:4990000
KS ci ratio: 1.758273e-01	ci left: 9.084292e-05	ci right 1.085433e-04	k: 496	n:4990000
PCDHA10   4990000 perm   10815 sec   (461 perm/sec)   p_kst 9.939880e-05   p_cons 8.561725e-01   p_joint 3.613226e-04

Joint ci ratio: 9.214848e-02	ci left: 3.451253e-04	ci right 3.786578e-04	k: 1808	n:5000000
Cons ci ratio: 7.185159e-04	ci left: 8.558675e-01	ci right 8.564829e-01	k: 4280877	n:5000000
KS ci ratio: 1.751239e-01	ci left: 9.142610e-05	ci right 1.091614e-04	k: 500	n:5000000
PCDHA10   5000000 perm   10858 sec   (460 perm/sec)   p_kst 1.000000e-04   p_cons 8.561754e-01   p_joint 3.616000e-04

Outputting figure to mutsig2_images.part000000000127/PCDHA10.13_3010_5000000_0.0001_0.85618_0.0003616.png
                gene_name: PCDHA10
               theta_stop: 0.18 
                    nperm: 5000000 
                     p_ks: 0.00010 
        ci_ks_bounds_left: 9.14e-05 
       ci_ks_bounds_right: 0.00011 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.00036 
     ci_joint_bounds_left: 0.00035 
    ci_joint_bounds_right: 0.00038 

Current progress: 14 percent done.
PCDHB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.679252e-02	ci left: 4.026288e-01	ci right 4.220223e-01	k: 4123	n:10000
Cons ci ratio: 7.966982e-02	ci left: 1.870774e-01	ci right 2.027008e-01	k: 1948	n:10000
KS ci ratio: 3.787610e-02	ci left: 5.072521e-01	ci right 5.269379e-01	k: 5171	n:10000
PCDHB7   10000 perm   2 sec   (4574 perm/sec)   p_kst 5.171000e-01   p_cons 1.948000e-01   p_joint 4.123000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB7.13_2386_10000_0.5171_0.1948_0.4123.png
                gene_name: PCDHB7
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 16 percent done.
PCDHA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.668823e-02	ci left: 8.393860e-01	ci right 8.536115e-01	k: 8466	n:10000
KS ci ratio: 3.420315e-02	ci left: 5.579219e-01	ci right 5.774387e-01	k: 5677	n:10000
PCDHA9   10000 perm   2 sec   (4937 perm/sec)   p_kst 5.677000e-01   p_cons 8.466000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHA9.12_3004_10000_0.5677_0.8466_1.png
                gene_name: PCDHA9
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
PCDHGB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.629514e-01	ci left: 5.022725e-02	ci right 5.923435e-02	k: 546	n:10000
Cons ci ratio: 1.365803e-01	ci left: 7.088017e-02	ci right 8.136835e-02	k: 760	n:10000
KS ci ratio: 1.026335e-01	ci left: 1.207287e-01	ci right 1.338892e-01	k: 1272	n:10000
PCDHGB7   10000 perm   2 sec   (5067 perm/sec)   p_kst 1.272000e-01   p_cons 7.600000e-02   p_joint 5.460000e-02

Joint ci ratio: 1.026566e-01	ci left: 6.445142e-02	ci right 7.147482e-02	k: 1358	n:20000
Cons ci ratio: 1.059125e-01	ci left: 6.069528e-02	ci right 6.753211e-02	k: 1281	n:20000
KS ci ratio: 7.192808e-02	ci left: 1.246298e-01	ci right 1.339783e-01	k: 2585	n:20000
PCDHGB7   20000 perm   4 sec   (4564 perm/sec)   p_kst 1.292500e-01   p_cons 6.405000e-02   p_joint 6.790000e-02

Joint ci ratio: 8.025415e-02	ci left: 7.070266e-02	ci right 7.664689e-02	k: 2209	n:30000
Cons ci ratio: 7.984536e-02	ci left: 7.138970e-02	ci right 7.735971e-02	k: 2230	n:30000
KS ci ratio: 5.893019e-02	ci left: 1.247326e-01	ci right 1.323395e-01	k: 3855	n:30000
PCDHGB7   30000 perm   7 sec   (4339 perm/sec)   p_kst 1.285000e-01   p_cons 7.433333e-02   p_joint 7.363333e-02

Outputting figure to mutsig2_images.part000000000127/PCDHGB7.12_2818_30000_0.1285_0.074333_0.073633.png
                gene_name: PCDHGB7
               theta_stop: 0.080 
                    nperm: 30000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.077 

Current progress: 18 percent done.
PCNX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.094953e-01	ci left: 1.073461e-01	ci right 1.198799e-01	k: 1135	n:10000
Cons ci ratio: 1.892472e-02	ci left: 8.031864e-01	ci right 8.186320e-01	k: 8110	n:10000
KS ci ratio: 1.739975e-01	ci left: 4.408409e-02	ci right 5.258151e-02	k: 482	n:10000
PCNX   10000 perm   3 sec   (3830 perm/sec)   p_kst 4.820000e-02   p_cons 8.110000e-01   p_joint 1.135000e-01

Joint ci ratio: 8.073127e-02	ci left: 1.011769e-01	ci right 1.097382e-01	k: 2108	n:20000
Cons ci ratio: 1.371217e-02	ci left: 7.978231e-01	ci right 8.088886e-01	k: 16068	n:20000
KS ci ratio: 1.225055e-01	ci left: 4.570923e-02	ci right 5.172285e-02	k: 973	n:20000
PCNX   20000 perm   6 sec   (3498 perm/sec)   p_kst 4.865000e-02   p_cons 8.034000e-01   p_joint 1.054000e-01

Joint ci ratio: 7.580802e-02	ci left: 7.872271e-02	ci right 8.495855e-02	k: 2454	n:30000
Cons ci ratio: 1.118286e-02	ci left: 7.992266e-01	ci right 8.082478e-01	k: 24113	n:30000
KS ci ratio: 1.009372e-01	ci left: 4.544559e-02	ci right 5.030911e-02	k: 1435	n:30000
PCNX   30000 perm   10 sec   (3149 perm/sec)   p_kst 4.783333e-02   p_cons 8.037667e-01   p_joint 8.180000e-02

Joint ci ratio: 6.900644e-02	ci left: 7.206820e-02	ci right 7.724375e-02	k: 2985	n:40000
Cons ci ratio: 9.718108e-03	ci left: 7.987405e-01	ci right 8.065656e-01	k: 32107	n:40000
KS ci ratio: 8.852901e-02	ci left: 4.465275e-02	ci right 4.881337e-02	k: 1868	n:40000
PCNX   40000 perm   13 sec   (3046 perm/sec)   p_kst 4.670000e-02   p_cons 8.026750e-01   p_joint 7.462500e-02

Outputting figure to mutsig2_images.part000000000127/PCNX.12_7170_40000_0.0467_0.80268_0.074625.png
                gene_name: PCNX
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.077 

Current progress: 19 percent done.
PCNXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.391178e-02	ci left: 7.199706e-01	ci right 7.374960e-01	k: 7288	n:10000
Cons ci ratio: 3.994587e-02	ci left: 4.806559e-01	ci right 5.003496e-01	k: 4905	n:10000
KS ci ratio: 3.342919e-02	ci left: 5.691511e-01	ci right 5.886029e-01	k: 5789	n:10000
PCNXL2   10000 perm   2 sec   (4054 perm/sec)   p_kst 5.789000e-01   p_cons 4.905000e-01   p_joint 7.288000e-01

Outputting figure to mutsig2_images.part000000000127/PCNXL2.12_6550_10000_0.5789_0.4905_0.7288.png
                gene_name: PCNXL2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 20 percent done.
PCDH19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.750450e-02	ci left: 3.953575e-01	ci right 4.146978e-01	k: 4050	n:10000
Cons ci ratio: 8.318649e-02	ci left: 1.740876e-01	ci right 1.892983e-01	k: 1816	n:10000
KS ci ratio: 4.010601e-02	ci left: 4.786573e-01	ci right 4.983494e-01	k: 4885	n:10000
PCDH19   10000 perm   3 sec   (3642 perm/sec)   p_kst 4.885000e-01   p_cons 1.816000e-01   p_joint 4.050000e-01

Outputting figure to mutsig2_images.part000000000127/PCDH19.11_3471_10000_0.4885_0.1816_0.405.png
                gene_name: PCDH19
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 22 percent done.
PCDHA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.552242e-02	ci left: 4.159818e-01	ci right 4.354615e-01	k: 4257	n:10000
Cons ci ratio: 3.282959e-02	ci left: 5.779777e-01	ci right 5.973712e-01	k: 5877	n:10000
KS ci ratio: 6.216491e-02	ci left: 2.755719e-01	ci right 2.933539e-01	k: 2844	n:10000
PCDHA4   10000 perm   2 sec   (4828 perm/sec)   p_kst 2.844000e-01   p_cons 5.877000e-01   p_joint 4.257000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA4.11_2872_10000_0.2844_0.5877_0.4257.png
                gene_name: PCDHA4
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 23 percent done.
PCDHB12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.923880e-02	ci left: 7.980096e-01	ci right 8.136118e-01	k: 8059	n:10000
Cons ci ratio: 2.635936e-02	ci left: 6.794201e-01	ci right 6.976699e-01	k: 6886	n:10000
KS ci ratio: 2.877516e-02	ci left: 6.403578e-01	ci right 6.591549e-01	k: 6498	n:10000
PCDHB12   10000 perm   2 sec   (4208 perm/sec)   p_kst 6.498000e-01   p_cons 6.886000e-01   p_joint 8.059000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB12.11_2392_10000_0.6498_0.6886_0.8059.png
                gene_name: PCDHB12
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 24 percent done.
PCDH20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.033598e-02	ci left: 1.845176e-01	ci right 2.000620e-01	k: 1922	n:10000
Cons ci ratio: 2.807057e-02	ci left: 6.516263e-01	ci right 6.702799e-01	k: 6610	n:10000
KS ci ratio: 1.238882e-01	ci left: 8.533549e-02	ci right 9.670407e-02	k: 909	n:10000
PCDH20   10000 perm   2 sec   (4177 perm/sec)   p_kst 9.090000e-02   p_cons 6.610000e-01   p_joint 1.922000e-01

Joint ci ratio: 6.182768e-02	ci left: 1.621508e-01	ci right 1.725461e-01	k: 3346	n:20000
Cons ci ratio: 1.932944e-02	ci left: 6.662477e-01	ci right 6.793020e-01	k: 13456	n:20000
KS ci ratio: 8.920376e-02	ci left: 8.410890e-02	ci right 9.201134e-02	k: 1760	n:20000
PCDH20   20000 perm   5 sec   (3854 perm/sec)   p_kst 8.800000e-02   p_cons 6.728000e-01   p_joint 1.673000e-01

Outputting figure to mutsig2_images.part000000000127/PCDH20.10_2864_20000_0.088_0.6728_0.1673.png
                gene_name: PCDH20
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 25 percent done.
PCDHA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.235422e-02	ci left: 7.460424e-01	ci right 7.630091e-01	k: 7546	n:10000
Cons ci ratio: 5.038155e-02	ci left: 3.674883e-01	ci right 3.865834e-01	k: 3770	n:10000
KS ci ratio: 2.133354e-02	ci left: 7.631424e-01	ci right 7.796992e-01	k: 7715	n:10000
PCDHA6   10000 perm   2 sec   (4613 perm/sec)   p_kst 7.715000e-01   p_cons 3.770000e-01   p_joint 7.546000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA6.10_2887_10000_0.7715_0.377_0.7546.png
                gene_name: PCDHA6
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 27 percent done.
PCDHAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.769459e-02	ci left: 1.949567e-01	ci right 2.108168e-01	k: 2028	n:10000
Cons ci ratio: 8.516963e-03	ci left: 9.507523e-01	ci right 9.589800e-01	k: 9550	n:10000
KS ci ratio: 1.147477e-01	ci left: 9.847268e-02	ci right 1.105588e-01	k: 1044	n:10000
PCDHAC1   10000 perm   3 sec   (3566 perm/sec)   p_kst 1.044000e-01   p_cons 9.550000e-01   p_joint 2.028000e-01

Joint ci ratio: 5.198736e-02	ci left: 2.155626e-01	ci right 2.271185e-01	k: 4426	n:20000
Cons ci ratio: 6.005666e-03	ci left: 9.522412e-01	ci right 9.580256e-01	k: 19104	n:20000
KS ci ratio: 8.120554e-02	ci left: 1.000967e-01	ci right 1.086187e-01	k: 2086	n:20000
PCDHAC1   20000 perm   6 sec   (3111 perm/sec)   p_kst 1.043000e-01   p_cons 9.552000e-01   p_joint 2.213000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHAC1.10_2932_20000_0.1043_0.9552_0.2213.png
                gene_name: PCDHAC1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 28 percent done.
PCDHB16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.135385e-02	ci left: 6.001585e-01	ci right 6.193775e-01	k: 6098	n:10000
Cons ci ratio: 1.964970e-02	ci left: 7.912118e-01	ci right 8.070136e-01	k: 7992	n:10000
KS ci ratio: 4.511523e-02	ci left: 4.203680e-01	ci right 4.398728e-01	k: 4301	n:10000
PCDHB16   10000 perm   2 sec   (4588 perm/sec)   p_kst 4.301000e-01   p_cons 7.992000e-01   p_joint 6.098000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB16.10_2335_10000_0.4301_0.7992_0.6098.png
                gene_name: PCDHB16
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 29 percent done.
PCDHGB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.715849e-01	ci left: 4.533038e-02	ci right 5.393440e-02	k: 495	n:10000
Cons ci ratio: 1.958236e-02	ci left: 7.923276e-01	ci right 8.080971e-01	k: 8003	n:10000
KS ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
PCDHGB6   10000 perm   2 sec   (4497 perm/sec)   p_kst 1.160000e-02   p_cons 8.003000e-01   p_joint 4.950000e-02

Joint ci ratio: 1.780934e-01	ci left: 2.154068e-02	ci right 2.579935e-02	k: 472	n:20000
Cons ci ratio: 1.382923e-02	ci left: 7.950951e-01	ci right 8.062173e-01	k: 16014	n:20000
KS ci ratio: 2.598528e-01	ci left: 9.787930e-03	ci right 1.275672e-02	k: 224	n:20000
PCDHGB6   20000 perm   5 sec   (3841 perm/sec)   p_kst 1.120000e-02   p_cons 8.007000e-01   p_joint 2.360000e-02

Joint ci ratio: 1.369063e-01	ci left: 2.477622e-02	ci right 2.844956e-02	k: 797	n:30000
Cons ci ratio: 1.123836e-02	ci left: 7.976466e-01	ci right 8.066948e-01	k: 24066	n:30000
KS ci ratio: 2.197008e-01	ci left: 9.345984e-03	ci right 1.168360e-02	k: 314	n:30000
PCDHGB6   30000 perm   8 sec   (3871 perm/sec)   p_kst 1.046667e-02   p_cons 8.022000e-01   p_joint 2.656667e-02

Joint ci ratio: 1.140727e-01	ci left: 2.703697e-02	ci right 3.033192e-02	k: 1146	n:40000
Cons ci ratio: 9.694329e-03	ci left: 7.995212e-01	ci right 8.073347e-01	k: 32138	n:40000
KS ci ratio: 1.904966e-01	ci left: 9.476622e-03	ci right 1.149539e-02	k: 418	n:40000
PCDHGB6   40000 perm   10 sec   (3844 perm/sec)   p_kst 1.045000e-02   p_cons 8.034500e-01   p_joint 2.865000e-02

Joint ci ratio: 9.265584e-02	ci left: 3.295644e-02	ci right 3.617789e-02	k: 1727	n:50000
Cons ci ratio: 8.660146e-03	ci left: 8.003318e-01	ci right 8.073129e-01	k: 40192	n:50000
KS ci ratio: 1.692061e-01	ci left: 9.720862e-03	ci right 1.153663e-02	k: 530	n:50000
PCDHGB6   50000 perm   13 sec   (3798 perm/sec)   p_kst 1.060000e-02   p_cons 8.038400e-01   p_joint 3.454000e-02

Joint ci ratio: 9.403022e-02	ci left: 2.682478e-02	ci right 2.948779e-02	k: 1688	n:60000
Cons ci ratio: 7.889454e-03	ci left: 8.012869e-01	ci right 8.076503e-01	k: 48269	n:60000
KS ci ratio: 1.556030e-01	ci left: 9.651741e-03	ci right 1.129613e-02	k: 627	n:60000
PCDHGB6   60000 perm   16 sec   (3738 perm/sec)   p_kst 1.045000e-02   p_cons 8.044833e-01   p_joint 2.813333e-02

Joint ci ratio: 8.096729e-02	ci left: 3.108661e-02	ci right 3.372377e-02	k: 2267	n:70000
Cons ci ratio: 7.316091e-03	ci left: 8.010108e-01	ci right 8.069068e-01	k: 56278	n:70000
KS ci ratio: 1.441268e-01	ci left: 9.703001e-03	ci right 1.122370e-02	k: 731	n:70000
PCDHGB6   70000 perm   19 sec   (3657 perm/sec)   p_kst 1.044286e-02   p_cons 8.039714e-01   p_joint 3.238571e-02

Joint ci ratio: 8.268796e-02	ci left: 2.619396e-02	ci right 2.846549e-02	k: 2185	n:80000
Cons ci ratio: 6.864925e-03	ci left: 8.002141e-01	ci right 8.057389e-01	k: 64239	n:80000
KS ci ratio: 1.338972e-01	ci left: 9.889809e-03	ci right 1.132101e-02	k: 847	n:80000
PCDHGB6   80000 perm   22 sec   (3618 perm/sec)   p_kst 1.058750e-02   p_cons 8.029875e-01   p_joint 2.731250e-02

Joint ci ratio: 8.184370e-02	ci left: 2.383732e-02	ci right 2.588235e-02	k: 2236	n:90000
Cons ci ratio: 6.253246e-03	ci left: 8.110960e-01	ci right 8.161949e-01	k: 73229	n:90000
KS ci ratio: 1.268457e-01	ci left: 9.833565e-03	ci right 1.117604e-02	k: 944	n:90000
PCDHGB6   90000 perm   25 sec   (3577 perm/sec)   p_kst 1.048889e-02   p_cons 8.136556e-01   p_joint 2.484444e-02

Joint ci ratio: 6.973573e-02	ci left: 2.956081e-02	ci right 3.170653e-02	k: 3062	n:100000
Cons ci ratio: 6.145942e-03	ci left: 8.002096e-01	ci right 8.051528e-01	k: 80269	n:100000
KS ci ratio: 1.192508e-01	ci left: 1.005213e-02	ci right 1.133649e-02	k: 1068	n:100000
PCDHGB6   100000 perm   28 sec   (3535 perm/sec)   p_kst 1.068000e-02   p_cons 8.026900e-01   p_joint 3.062000e-02

Joint ci ratio: 7.759897e-02	ci left: 2.179219e-02	ci right 2.356038e-02	k: 2493	n:110000
Cons ci ratio: 5.970690e-03	ci left: 7.943002e-01	ci right 7.990660e-01	k: 87636	n:110000
KS ci ratio: 1.140399e-01	ci left: 1.002086e-02	ci right 1.124151e-02	k: 1168	n:110000
PCDHGB6   110000 perm   32 sec   (3491 perm/sec)   p_kst 1.061818e-02   p_cons 7.966909e-01   p_joint 2.266364e-02

Joint ci ratio: 7.586107e-02	ci left: 2.094028e-02	ci right 2.259961e-02	k: 2611	n:120000
Cons ci ratio: 5.713397e-03	ci left: 7.945790e-01	ci right 7.991400e-01	k: 95624	n:120000
KS ci ratio: 1.091967e-01	ci left: 1.004448e-02	ci right 1.121269e-02	k: 1274	n:120000
PCDHGB6   120000 perm   35 sec   (3412 perm/sec)   p_kst 1.061667e-02   p_cons 7.968667e-01   p_joint 2.175833e-02

Joint ci ratio: 6.844899e-02	ci left: 2.376473e-02	ci right 2.545657e-02	k: 3198	n:130000
Cons ci ratio: 5.497686e-03	ci left: 7.941697e-01	ci right 7.985555e-01	k: 103528	n:130000
KS ci ratio: 1.048458e-01	ci left: 1.008037e-02	ci right 1.120316e-02	k: 1382	n:130000
PCDHGB6   130000 perm   38 sec   (3377 perm/sec)   p_kst 1.063077e-02   p_cons 7.963692e-01   p_joint 2.460000e-02

Joint ci ratio: 6.747107e-02	ci left: 2.274792e-02	ci right 2.434333e-02	k: 3295	n:140000
Cons ci ratio: 5.299416e-03	ci left: 7.941448e-01	ci right 7.983715e-01	k: 111477	n:140000
KS ci ratio: 1.009424e-01	ci left: 1.011889e-02	ci right 1.120152e-02	k: 1491	n:140000
PCDHGB6   140000 perm   42 sec   (3342 perm/sec)   p_kst 1.065000e-02   p_cons 7.962643e-01   p_joint 2.353571e-02

Joint ci ratio: 6.536764e-02	ci left: 2.264744e-02	ci right 2.418439e-02	k: 3511	n:150000
Cons ci ratio: 5.112214e-03	ci left: 7.946944e-01	ci right 7.987741e-01	k: 119511	n:150000
KS ci ratio: 9.707776e-02	ci left: 1.023102e-02	ci right 1.128135e-02	k: 1612	n:150000
PCDHGB6   150000 perm   45 sec   (3308 perm/sec)   p_kst 1.074667e-02   p_cons 7.967400e-01   p_joint 2.340667e-02

Outputting figure to mutsig2_images.part000000000127/PCDHGB6.10_2854_150000_0.010747_0.79674_0.023407.png
                gene_name: PCDHGB6
               theta_stop: 0.097 
                    nperm: 150000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.024 

Current progress: 30 percent done.
PCDHGC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.125939e-01	ci left: 1.019814e-01	ci right 1.142479e-01	k: 1080	n:10000
Cons ci ratio: 1.365061e-02	ci left: 8.856497e-01	ci right 8.979211e-01	k: 8919	n:10000
KS ci ratio: 1.827128e-01	ci left: 3.996794e-02	ci right 4.810038e-02	k: 439	n:10000
PCDHGC4   10000 perm   2 sec   (4154 perm/sec)   p_kst 4.390000e-02   p_cons 8.919000e-01   p_joint 1.080000e-01

Joint ci ratio: 8.633138e-02	ci left: 8.940144e-02	ci right 9.751720e-02	k: 1868	n:20000
Cons ci ratio: 9.611133e-03	ci left: 8.883285e-01	ci right 8.969570e-01	k: 17854	n:20000
KS ci ratio: 1.295859e-01	ci left: 4.090836e-02	ci right 4.662524e-02	k: 874	n:20000
PCDHGC4   20000 perm   5 sec   (4268 perm/sec)   p_kst 4.370000e-02   p_cons 8.927000e-01   p_joint 9.340000e-02

Joint ci ratio: 7.972960e-02	ci left: 7.158601e-02	ci right 7.756336e-02	k: 2236	n:30000
Cons ci ratio: 7.800629e-03	ci left: 8.902926e-01	ci right 8.972976e-01	k: 26815	n:30000
KS ci ratio: 1.084026e-01	ci left: 3.949821e-02	ci right 4.405774e-02	k: 1252	n:30000
PCDHGC4   30000 perm   7 sec   (4260 perm/sec)   p_kst 4.173333e-02   p_cons 8.938333e-01   p_joint 7.453333e-02

Joint ci ratio: 5.668884e-02	ci left: 1.037400e-01	ci right 1.098172e-01	k: 4270	n:40000
Cons ci ratio: 6.753911e-03	ci left: 8.908155e-01	ci right 8.968772e-01	k: 35755	n:40000
KS ci ratio: 9.308785e-02	ci left: 4.047056e-02	ci right 4.444621e-02	k: 1697	n:40000
PCDHGC4   40000 perm   10 sec   (4183 perm/sec)   p_kst 4.242500e-02   p_cons 8.938750e-01   p_joint 1.067500e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGC4.10_3007_40000_0.042425_0.89387_0.10675.png
                gene_name: PCDHGC4
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 31 percent done.
PCF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.032241e-02	ci left: 6.160289e-01	ci right 6.350979e-01	k: 6256	n:10000
Cons ci ratio: 5.740679e-02	ci left: 3.087773e-01	ci right 3.271288e-01	k: 3179	n:10000
KS ci ratio: 3.749872e-02	ci left: 5.122545e-01	ci right 5.319326e-01	k: 5221	n:10000
PCF11   10000 perm   2 sec   (4246 perm/sec)   p_kst 5.221000e-01   p_cons 3.179000e-01   p_joint 6.256000e-01

Outputting figure to mutsig2_images.part000000000127/PCF11.10_4732_10000_0.5221_0.3179_0.6256.png
                gene_name: PCF11
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 33 percent done.
PCM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.772965e-02	ci left: 8.226953e-01	ci right 8.375119e-01	k: 8302	n:10000
Cons ci ratio: 1.504163e-02	ci left: 8.649871e-01	ci right 8.781956e-01	k: 8717	n:10000
KS ci ratio: 2.829005e-02	ci left: 6.481042e-01	ci right 6.668040e-01	k: 6575	n:10000
PCM1   10000 perm   3 sec   (3900 perm/sec)   p_kst 6.575000e-01   p_cons 8.717000e-01   p_joint 8.302000e-01

Outputting figure to mutsig2_images.part000000000127/PCM1.10_6223_10000_0.6575_0.8717_0.8302.png
                gene_name: PCM1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 34 percent done.
PCDHA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.642698e-02	ci left: 6.783117e-01	ci right 6.965790e-01	k: 6875	n:10000
Cons ci ratio: 4.151183e-02	ci left: 4.614759e-01	ci right 4.811408e-01	k: 4713	n:10000
KS ci ratio: 4.003386e-02	ci left: 4.795567e-01	ci right 4.992495e-01	k: 4894	n:10000
PCDHA1   10000 perm   2 sec   (4940 perm/sec)   p_kst 4.894000e-01   p_cons 4.713000e-01   p_joint 6.875000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA1.9_2899_10000_0.4894_0.4713_0.6875.png
                gene_name: PCDHA1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 35 percent done.
PCDHB15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.121569e-02	ci left: 6.022673e-01	ci right 6.214675e-01	k: 6119	n:10000
Cons ci ratio: 3.082932e-02	ci left: 6.081928e-01	ci right 6.273385e-01	k: 6178	n:10000
KS ci ratio: 4.150350e-02	ci left: 4.615758e-01	ci right 4.812409e-01	k: 4714	n:10000
PCDHB15   10000 perm   2 sec   (5044 perm/sec)   p_kst 4.714000e-01   p_cons 6.178000e-01   p_joint 6.119000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB15.9_2368_10000_0.4714_0.6178_0.6119.png
                gene_name: PCDHB15
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 36 percent done.
PCDHGB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
Cons ci ratio: 1.353717e-02	ci left: 8.872890e-01	ci right 8.994808e-01	k: 8935	n:10000
KS ci ratio: 3.198132e-01	ci left: 1.243336e-02	ci right 1.725533e-02	k: 147	n:10000
PCDHGB1   10000 perm   2 sec   (4864 perm/sec)   p_kst 1.470000e-02   p_cons 8.935000e-01   p_joint 4.200000e-02

Joint ci ratio: 1.437437e-01	ci left: 3.326778e-02	ci right 3.846828e-02	k: 716	n:20000
Cons ci ratio: 9.538260e-03	ci left: 8.898039e-01	ci right 8.983812e-01	k: 17883	n:20000
KS ci ratio: 2.338876e-01	ci left: 1.222918e-02	ci right 1.551439e-02	k: 276	n:20000
PCDHGB1   20000 perm   5 sec   (4260 perm/sec)   p_kst 1.380000e-02   p_cons 8.941500e-01   p_joint 3.580000e-02

Joint ci ratio: 9.159933e-02	ci left: 5.489200e-02	ci right 6.019409e-02	k: 1725	n:30000
Cons ci ratio: 7.773208e-03	ci left: 8.909689e-01	ci right 8.979545e-01	k: 26835	n:30000
KS ci ratio: 1.859295e-01	ci left: 1.324141e-02	ci right 1.598710e-02	k: 437	n:30000
PCDHGB1   30000 perm   7 sec   (4080 perm/sec)   p_kst 1.456667e-02   p_cons 8.945000e-01   p_joint 5.750000e-02

Joint ci ratio: 7.263293e-02	ci left: 6.540440e-02	ci right 7.035856e-02	k: 2714	n:40000
Cons ci ratio: 6.758359e-03	ci left: 8.906890e-01	ci right 8.967537e-01	k: 35750	n:40000
KS ci ratio: 1.613008e-01	ci left: 1.337538e-02	ci right 1.574586e-02	k: 581	n:40000
PCDHGB1   40000 perm   10 sec   (3897 perm/sec)   p_kst 1.452500e-02   p_cons 8.937500e-01   p_joint 6.785000e-02

Joint ci ratio: 8.238274e-02	ci left: 4.153256e-02	ci right 4.512071e-02	k: 2165	n:50000
Cons ci ratio: 6.043189e-03	ci left: 8.910666e-01	ci right 8.964876e-01	k: 44690	n:50000
KS ci ratio: 1.431285e-01	ci left: 1.372124e-02	ci right 1.585564e-02	k: 738	n:50000
PCDHGB1   50000 perm   13 sec   (3869 perm/sec)   p_kst 1.476000e-02   p_cons 8.938000e-01   p_joint 4.330000e-02

Joint ci ratio: 7.935132e-02	ci left: 3.753034e-02	ci right 4.064778e-02	k: 2344	n:60000
Cons ci ratio: 5.623994e-03	ci left: 8.875533e-01	ci right 8.925755e-01	k: 53405	n:60000
KS ci ratio: 1.317021e-01	ci left: 1.359095e-02	ci right 1.552309e-02	k: 872	n:60000
PCDHGB1   60000 perm   16 sec   (3836 perm/sec)   p_kst 1.453333e-02   p_cons 8.900833e-01   p_joint 3.906667e-02

Joint ci ratio: 7.796220e-02	ci left: 3.349654e-02	ci right 3.622791e-02	k: 2439	n:70000
Cons ci ratio: 5.210893e-03	ci left: 8.875867e-01	ci right 8.922381e-01	k: 62295	n:70000
KS ci ratio: 1.220847e-01	ci left: 1.362748e-02	ci right 1.541310e-02	k: 1015	n:70000
PCDHGB1   70000 perm   18 sec   (3793 perm/sec)   p_kst 1.450000e-02   p_cons 8.899286e-01   p_joint 3.484286e-02

Joint ci ratio: 7.566264e-02	ci left: 3.123287e-02	ci right 3.370118e-02	k: 2596	n:80000
Cons ci ratio: 4.869123e-03	ci left: 8.879501e-01	ci right 8.922966e-01	k: 71211	n:80000
KS ci ratio: 1.145580e-01	ci left: 1.359801e-02	ci right 1.526248e-02	k: 1153	n:80000
PCDHGB1   80000 perm   21 sec   (3752 perm/sec)   p_kst 1.441250e-02   p_cons 8.901375e-01   p_joint 3.245000e-02

Joint ci ratio: 6.908949e-02	ci left: 3.333894e-02	ci right 3.573562e-02	k: 3107	n:90000
Cons ci ratio: 4.598294e-03	ci left: 8.877473e-01	ci right 8.918498e-01	k: 80083	n:90000
KS ci ratio: 1.087417e-01	ci left: 1.345878e-02	ci right 1.501720e-02	k: 1280	n:90000
PCDHGB1   90000 perm   24 sec   (3704 perm/sec)   p_kst 1.422222e-02   p_cons 8.898111e-01   p_joint 3.452222e-02

Joint ci ratio: 6.424815e-02	ci left: 3.473571e-02	ci right 3.705131e-02	k: 3588	n:100000
Cons ci ratio: 4.369675e-03	ci left: 8.875204e-01	ci right 8.914170e-01	k: 88948	n:100000
KS ci ratio: 1.022663e-01	ci left: 1.373896e-02	ci right 1.522939e-02	k: 1447	n:100000
PCDHGB1   100000 perm   27 sec   (3657 perm/sec)   p_kst 1.447000e-02   p_cons 8.894800e-01   p_joint 3.588000e-02

Joint ci ratio: 6.416300e-02	ci left: 3.176418e-02	ci right 3.387873e-02	k: 3609	n:110000
Cons ci ratio: 3.976560e-03	ci left: 8.965171e-01	ci right 9.000982e-01	k: 98815	n:110000
KS ci ratio: 9.768773e-02	ci left: 1.372201e-02	ci right 1.514013e-02	k: 1586	n:110000
PCDHGB1   110000 perm   31 sec   (3594 perm/sec)   p_kst 1.441818e-02   p_cons 8.983182e-01   p_joint 3.280909e-02

Outputting figure to mutsig2_images.part000000000127/PCDHGB1.9_2824_110000_0.014418_0.89832_0.032809.png
                gene_name: PCDHGB1
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.034 

Current progress: 37 percent done.
PCDHGB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.237387e-01	ci left: 8.552985e-02	ci right 9.690958e-02	k: 911	n:10000
Cons ci ratio: 3.019958e-02	ci left: 6.179381e-01	ci right 6.369876e-01	k: 6275	n:10000
KS ci ratio: 3.176417e-01	ci left: 1.261754e-02	ci right 1.747097e-02	k: 149	n:10000
PCDHGB5   10000 perm   2 sec   (5164 perm/sec)   p_kst 1.490000e-02   p_cons 6.275000e-01   p_joint 9.110000e-02

Joint ci ratio: 1.578823e-01	ci left: 2.753511e-02	ci right 3.230286e-02	k: 597	n:20000
Cons ci ratio: 2.143078e-02	ci left: 6.191007e-01	ci right 6.325627e-01	k: 12517	n:20000
KS ci ratio: 2.227351e-01	ci left: 1.355014e-02	ci right 1.699289e-02	k: 304	n:20000
PCDHGB5   20000 perm   4 sec   (4625 perm/sec)   p_kst 1.520000e-02   p_cons 6.258500e-01   p_joint 2.985000e-02

Joint ci ratio: 9.827099e-02	ci left: 4.788630e-02	ci right 5.286790e-02	k: 1510	n:30000
Cons ci ratio: 1.672149e-02	ci left: 6.414276e-01	ci right 6.522772e-01	k: 19406	n:30000
KS ci ratio: 1.823706e-01	ci left: 1.378230e-02	ci right 1.657941e-02	k: 454	n:30000
PCDHGB5   30000 perm   7 sec   (4406 perm/sec)   p_kst 1.513333e-02   p_cons 6.468667e-01   p_joint 5.033333e-02

Joint ci ratio: 1.044721e-01	ci left: 3.222101e-02	ci right 3.579705e-02	k: 1359	n:40000
Cons ci ratio: 1.499688e-02	ci left: 6.259737e-01	ci right 6.354573e-01	k: 25229	n:40000
KS ci ratio: 1.568479e-01	ci left: 1.416799e-02	ci right 1.660311e-02	k: 614	n:40000
PCDHGB5   40000 perm   10 sec   (4064 perm/sec)   p_kst 1.535000e-02   p_cons 6.307250e-01   p_joint 3.397500e-02

Joint ci ratio: 7.504948e-02	ci left: 4.979491e-02	ci right 5.369734e-02	k: 2586	n:50000
Cons ci ratio: 1.341382e-02	ci left: 6.264723e-01	ci right 6.349525e-01	k: 31536	n:50000
KS ci ratio: 1.391675e-01	ci left: 1.453199e-02	ci right 1.672477e-02	k: 780	n:50000
PCDHGB5   50000 perm   13 sec   (3922 perm/sec)   p_kst 1.560000e-02   p_cons 6.307200e-01   p_joint 5.172000e-02

Joint ci ratio: 7.005184e-02	ci left: 4.785983e-02	ci right 5.135057e-02	k: 2975	n:60000
Cons ci ratio: 1.228511e-02	ci left: 6.253206e-01	ci right 6.330669e-01	k: 37752	n:60000
KS ci ratio: 1.285269e-01	ci left: 1.428461e-02	ci right 1.626268e-02	k: 915	n:60000
PCDHGB5   60000 perm   15 sec   (3893 perm/sec)   p_kst 1.525000e-02   p_cons 6.292000e-01   p_joint 4.958333e-02

Joint ci ratio: 6.949943e-02	ci left: 4.195859e-02	ci right 4.499369e-02	k: 3042	n:70000
Cons ci ratio: 1.139822e-02	ci left: 6.246074e-01	ci right 6.317819e-01	k: 43974	n:70000
KS ci ratio: 1.188613e-01	ci left: 1.438985e-02	ci right 1.622208e-02	k: 1070	n:70000
PCDHGB5   70000 perm   18 sec   (3857 perm/sec)   p_kst 1.528571e-02   p_cons 6.282000e-01   p_joint 4.345714e-02

Joint ci ratio: 5.284710e-02	ci left: 6.264689e-02	ci right 6.605979e-02	k: 5147	n:80000
Cons ci ratio: 1.066493e-02	ci left: 6.247150e-01	ci right 6.314257e-01	k: 50246	n:80000
KS ci ratio: 1.117422e-01	ci left: 1.430277e-02	ci right 1.600765e-02	k: 1211	n:80000
PCDHGB5   80000 perm   21 sec   (3818 perm/sec)   p_kst 1.513750e-02   p_cons 6.280750e-01   p_joint 6.433750e-02

Joint ci ratio: 5.067885e-02	ci left: 6.075145e-02	ci right 6.392127e-02	k: 5609	n:90000
Cons ci ratio: 1.004896e-02	ci left: 6.251888e-01	ci right 6.315141e-01	k: 56552	n:90000
KS ci ratio: 1.046332e-01	ci left: 1.455148e-02	ci right 1.616886e-02	k: 1381	n:90000
PCDHGB5   90000 perm   24 sec   (3778 perm/sec)   p_kst 1.534444e-02   p_cons 6.283556e-01   p_joint 6.232222e-02

Joint ci ratio: 4.875890e-02	ci left: 5.922782e-02	ci right 6.219773e-02	k: 6070	n:100000
Cons ci ratio: 9.522797e-03	ci left: 6.258670e-01	ci right 6.318655e-01	k: 62887	n:100000
KS ci ratio: 9.843875e-02	ci left: 1.484101e-02	ci right 1.638727e-02	k: 1560	n:100000
PCDHGB5   100000 perm   27 sec   (3741 perm/sec)   p_kst 1.560000e-02   p_cons 6.288700e-01   p_joint 6.070000e-02

Outputting figure to mutsig2_images.part000000000127/PCDHGB5.9_2848_100000_0.0156_0.62887_0.0607.png
                gene_name: PCDHGB5
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.062 

Current progress: 39 percent done.
PCNT
Processing conservation and coverage...
98% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.986464e-02	ci left: 6.231641e-01	ci right 6.421586e-01	k: 6327	n:10000
Cons ci ratio: 8.397618e-03	ci left: 9.520040e-01	ci right 9.601277e-01	k: 9562	n:10000
KS ci ratio: 4.944042e-02	ci left: 3.763431e-01	ci right 3.955234e-01	k: 3859	n:10000
PCNT   10000 perm   3 sec   (3552 perm/sec)   p_kst 3.859000e-01   p_cons 9.562000e-01   p_joint 6.327000e-01

Outputting figure to mutsig2_images.part000000000127/PCNT.9_10199_10000_0.3859_0.9562_0.6327.png
                gene_name: PCNT
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 40 percent done.
PCDHA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.113278e-01	ci left: 1.041267e-01	ci right 1.165013e-01	k: 1102	n:10000
Cons ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
KS ci ratio: 4.953441e-02	ci left: 3.754476e-01	ci right 3.946195e-01	k: 3850	n:10000
PCDHA5   10000 perm   2 sec   (5562 perm/sec)   p_kst 3.850000e-01   p_cons 5.140000e-02   p_joint 1.102000e-01

Joint ci ratio: 7.870210e-02	ci left: 1.059903e-01	ci right 1.147233e-01	k: 2206	n:20000
Cons ci ratio: 1.101510e-01	ci left: 5.626075e-02	ci right 6.286802e-02	k: 1190	n:20000
KS ci ratio: 3.646613e-02	ci left: 3.594682e-01	ci right 3.728707e-01	k: 7323	n:20000
PCDHA5   20000 perm   4 sec   (4972 perm/sec)   p_kst 3.661500e-01   p_cons 5.950000e-02   p_joint 1.103000e-01

Joint ci ratio: 6.559894e-02	ci left: 1.028666e-01	ci right 1.098765e-01	k: 3190	n:30000
Cons ci ratio: 9.071046e-02	ci left: 5.593575e-02	ci right 6.128346e-02	k: 1757	n:30000
KS ci ratio: 2.980653e-02	ci left: 3.602133e-01	ci right 3.711460e-01	k: 10970	n:30000
PCDHA5   30000 perm   7 sec   (4598 perm/sec)   p_kst 3.656667e-01   p_cons 5.856667e-02   p_joint 1.063333e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA5.8_2926_30000_0.36567_0.058567_0.10633.png
                gene_name: PCDHA5
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 41 percent done.
PCDHA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.310805e-02	ci left: 5.738649e-01	ci right 5.932863e-01	k: 5836	n:10000
Cons ci ratio: 1.557477e-02	ci left: 8.568193e-01	ci right 8.703681e-01	k: 8637	n:10000
KS ci ratio: 4.220959e-02	ci left: 4.531890e-01	ci right 4.728325e-01	k: 4630	n:10000
PCDHA8   10000 perm   2 sec   (5514 perm/sec)   p_kst 4.630000e-01   p_cons 8.637000e-01   p_joint 5.836000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA8.8_2920_10000_0.463_0.8637_0.5836.png
                gene_name: PCDHA8
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 42 percent done.
PCDHAC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.937479e-02	ci left: 4.878522e-01	ci right 5.075492e-01	k: 4977	n:10000
Cons ci ratio: 3.895970e-02	ci left: 4.931507e-01	ci right 5.128476e-01	k: 5030	n:10000
KS ci ratio: 5.605823e-02	ci left: 3.190972e-01	ci right 3.376029e-01	k: 3283	n:10000
PCDHAC2   10000 perm   2 sec   (5169 perm/sec)   p_kst 3.283000e-01   p_cons 5.030000e-01   p_joint 4.977000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHAC2.8_3130_10000_0.3283_0.503_0.4977.png
                gene_name: PCDHAC2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 43 percent done.
PCDHB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.248092e-02	ci left: 7.439188e-01	ci right 7.609339e-01	k: 7525	n:10000
Cons ci ratio: 2.683359e-02	ci left: 6.716624e-01	ci right 6.900322e-01	k: 6809	n:10000
KS ci ratio: 2.816456e-02	ci left: 6.501168e-01	ci right 6.687903e-01	k: 6595	n:10000
PCDHB1   10000 perm   2 sec   (5342 perm/sec)   p_kst 6.595000e-01   p_cons 6.809000e-01   p_joint 7.525000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB1.8_2461_10000_0.6595_0.6809_0.7525.png
                gene_name: PCDHB1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 45 percent done.
PCDHB10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.635105e-03	ci left: 9.383791e-01	ci right 9.475607e-01	k: 9431	n:10000
KS ci ratio: 2.418404e-02	ci left: 7.154271e-01	ci right 7.330421e-01	k: 7243	n:10000
PCDHB10   10000 perm   2 sec   (5228 perm/sec)   p_kst 7.243000e-01   p_cons 9.431000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHB10.8_2407_10000_0.7243_0.9431_1.png
                gene_name: PCDHB10
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
PCDHB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.457387e-02	ci left: 5.526098e-01	ci right 5.721538e-01	k: 5624	n:10000
Cons ci ratio: 4.956580e-02	ci left: 3.751490e-01	ci right 3.943182e-01	k: 3847	n:10000
KS ci ratio: 3.985010e-02	ci left: 4.818551e-01	ci right 5.015497e-01	k: 4917	n:10000
PCDHB6   10000 perm   2 sec   (5414 perm/sec)   p_kst 4.917000e-01   p_cons 3.847000e-01   p_joint 5.624000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB6.8_2389_10000_0.4917_0.3847_0.5624.png
                gene_name: PCDHB6
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 47 percent done.
PCDHB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.615502e-01	ci left: 5.109258e-02	ci right 6.016847e-02	k: 555	n:10000
Cons ci ratio: 6.787716e-02	ci left: 2.415369e-01	ci right 2.586089e-01	k: 2500	n:10000
KS ci ratio: 1.922817e-01	ci left: 3.605305e-02	ci right 4.381788e-02	k: 398	n:10000
PCDHB8   10000 perm   2 sec   (5517 perm/sec)   p_kst 3.980000e-02   p_cons 2.500000e-01   p_joint 5.550000e-02

Joint ci ratio: 1.052995e-01	ci left: 6.137797e-02	ci right 6.824922e-02	k: 1295	n:20000
Cons ci ratio: 4.776758e-02	ci left: 2.458455e-01	ci right 2.579267e-01	k: 5037	n:20000
KS ci ratio: 1.351748e-01	ci left: 3.761647e-02	ci right 4.311819e-02	k: 806	n:20000
PCDHB8   20000 perm   4 sec   (4548 perm/sec)   p_kst 4.030000e-02   p_cons 2.518500e-01   p_joint 6.475000e-02

Joint ci ratio: 6.971747e-02	ci left: 9.199997e-02	ci right 9.867863e-02	k: 2859	n:30000
Cons ci ratio: 3.865347e-02	ci left: 2.503400e-01	ci right 2.602407e-01	k: 7658	n:30000
KS ci ratio: 1.132021e-01	ci left: 3.625368e-02	ci right 4.063629e-02	k: 1152	n:30000
PCDHB8   30000 perm   7 sec   (4514 perm/sec)   p_kst 3.840000e-02   p_cons 2.552667e-01   p_joint 9.530000e-02

Joint ci ratio: 8.948750e-02	ci left: 4.372294e-02	ci right 4.784332e-02	k: 1830	n:40000
Cons ci ratio: 3.474734e-02	ci left: 2.371630e-01	ci right 2.455745e-01	k: 9654	n:40000
KS ci ratio: 9.768437e-02	ci left: 3.680646e-02	ci right 4.061088e-02	k: 1547	n:40000
PCDHB8   40000 perm   9 sec   (4450 perm/sec)   p_kst 3.867500e-02   p_cons 2.413500e-01   p_joint 4.575000e-02

Outputting figure to mutsig2_images.part000000000127/PCDHB8.8_2410_40000_0.038675_0.24135_0.04575.png
                gene_name: PCDHB8
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.048 

Current progress: 48 percent done.
PCDHGA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.089762e-02	ci left: 7.704332e-01	ci right 7.868042e-01	k: 7787	n:10000
Cons ci ratio: 1.843563e-02	ci left: 8.112097e-01	ci right 8.264042e-01	k: 8189	n:10000
KS ci ratio: 3.007054e-02	ci left: 6.199480e-01	ci right 6.389766e-01	k: 6295	n:10000
PCDHGA1   10000 perm   2 sec   (5173 perm/sec)   p_kst 6.295000e-01   p_cons 8.189000e-01   p_joint 7.787000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA1.8_2863_10000_0.6295_0.8189_0.7787.png
                gene_name: PCDHGA1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 49 percent done.
PCDHGA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.383106e-02	ci left: 2.117161e-01	ci right 2.280474e-01	k: 2198	n:10000
Cons ci ratio: 6.875699e-02	ci left: 2.367933e-01	ci right 2.537553e-01	k: 2452	n:10000
KS ci ratio: 9.913811e-02	ci left: 1.284572e-01	ci right 1.419561e-01	k: 1351	n:10000
PCDHGA12   10000 perm   2 sec   (4604 perm/sec)   p_kst 1.351000e-01   p_cons 2.452000e-01   p_joint 2.198000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA12.8_2854_10000_0.1351_0.2452_0.2198.png
                gene_name: PCDHGA12
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 51 percent done.
PCDHGA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.303999e-02	ci left: 5.748680e-01	ci right 5.942827e-01	k: 5846	n:10000
Cons ci ratio: 4.290354e-02	ci left: 4.451045e-01	ci right 4.647218e-01	k: 4549	n:10000
KS ci ratio: 3.601525e-02	ci left: 5.323740e-01	ci right 5.520014e-01	k: 5422	n:10000
PCDHGA3   10000 perm   2 sec   (4887 perm/sec)   p_kst 5.422000e-01   p_cons 4.549000e-01   p_joint 5.846000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA3.8_2881_10000_0.5422_0.4549_0.5846.png
                gene_name: PCDHGA3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 52 percent done.
PCDHGA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.998313e-02	ci left: 1.522755e-01	ci right 1.667234e-01	k: 1594	n:10000
Cons ci ratio: 2.343441e-02	ci left: 7.279497e-01	ci right 7.453122e-01	k: 7367	n:10000
KS ci ratio: 1.179891e-01	ci left: 9.350575e-02	ci right 1.053288e-01	k: 993	n:10000
PCDHGA5   10000 perm   2 sec   (5481 perm/sec)   p_kst 9.930000e-02   p_cons 7.367000e-01   p_joint 1.594000e-01

Joint ci ratio: 6.396297e-02	ci left: 1.530194e-01	ci right 1.631802e-01	k: 3161	n:20000
Cons ci ratio: 1.677166e-02	ci left: 7.258032e-01	ci right 7.381293e-01	k: 14640	n:20000
KS ci ratio: 8.262725e-02	ci left: 9.695524e-02	ci right 1.053611e-01	k: 2022	n:20000
PCDHGA5   20000 perm   4 sec   (4853 perm/sec)   p_kst 1.011000e-01   p_cons 7.320000e-01   p_joint 1.580500e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA5.8_2833_20000_0.1011_0.732_0.15805.png
                gene_name: PCDHGA5
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 53 percent done.
PCDHGA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.580158e-02	ci left: 6.885921e-01	ci right 7.066926e-01	k: 6977	n:10000
Cons ci ratio: 2.641468e-02	ci left: 6.785132e-01	ci right 6.967774e-01	k: 6877	n:10000
KS ci ratio: 4.495000e-02	ci left: 4.221625e-01	ci right 4.416772e-01	k: 4319	n:10000
PCDHGA6   10000 perm   2 sec   (4867 perm/sec)   p_kst 4.319000e-01   p_cons 6.877000e-01   p_joint 6.977000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA6.8_2848_10000_0.4319_0.6877_0.6977.png
                gene_name: PCDHGA6
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 54 percent done.
PCDHGA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.242548e-02	ci left: 2.738884e-01	ci right 2.916384e-01	k: 2827	n:10000
Cons ci ratio: 1.870845e-02	ci left: 8.067404e-01	ci right 8.220760e-01	k: 8145	n:10000
KS ci ratio: 1.004304e-01	ci left: 1.255214e-01	ci right 1.388936e-01	k: 1321	n:10000
PCDHGA9   10000 perm   2 sec   (5219 perm/sec)   p_kst 1.321000e-01   p_cons 8.145000e-01   p_joint 2.827000e-01

Joint ci ratio: 5.038219e-02	ci left: 2.264616e-01	ci right 2.382163e-01	k: 4646	n:20000
Cons ci ratio: 1.340544e-02	ci left: 8.049480e-01	ci right 8.158616e-01	k: 16209	n:20000
KS ci ratio: 7.031306e-02	ci left: 1.297506e-01	ci right 1.392560e-01	k: 2689	n:20000
PCDHGA9   20000 perm   4 sec   (4703 perm/sec)   p_kst 1.344500e-01   p_cons 8.104500e-01   p_joint 2.323000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA9.8_2878_20000_0.13445_0.81045_0.2323.png
                gene_name: PCDHGA9
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 55 percent done.
PCDHGB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.753939e-02	ci left: 3.077853e-01	ci right 3.261214e-01	k: 3169	n:10000
Cons ci ratio: 7.693422e-02	ci left: 1.981098e-01	ci right 2.140618e-01	k: 2060	n:10000
KS ci ratio: 4.852468e-02	ci left: 3.852013e-01	ci right 4.044600e-01	k: 3948	n:10000
PCDHGB3   10000 perm   2 sec   (4752 perm/sec)   p_kst 3.948000e-01   p_cons 2.060000e-01   p_joint 3.169000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGB3.8_2836_10000_0.3948_0.206_0.3169.png
                gene_name: PCDHGB3
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 57 percent done.
PCOLCE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.223032e-02	ci left: 5.869078e-01	ci right 6.062359e-01	k: 5966	n:10000
KS ci ratio: 2.888903e-02	ci left: 6.385473e-01	ci right 6.573664e-01	k: 6480	n:10000
PCOLCE2   10000 perm   2 sec   (5802 perm/sec)   p_kst 6.480000e-01   p_cons 5.966000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCOLCE2.8_1284_10000_0.648_0.5966_1.png
                gene_name: PCOLCE2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
PCDH7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.005397e-01	ci left: 3.310027e-02	ci right 4.057267e-02	k: 367	n:10000
Cons ci ratio: 1.472195e-01	ci left: 6.130724e-02	ci right 7.114729e-02	k: 661	n:10000
KS ci ratio: 1.467453e-01	ci left: 6.169346e-02	ci right 7.156083e-02	k: 665	n:10000
PCDH7   10000 perm   2 sec   (4771 perm/sec)   p_kst 6.650000e-02   p_cons 6.610000e-02   p_joint 3.670000e-02

Joint ci ratio: 1.483095e-01	ci left: 3.124203e-02	ci right 3.629470e-02	k: 674	n:20000
Cons ci ratio: 1.092757e-01	ci left: 5.713750e-02	ci right 6.379100e-02	k: 1208	n:20000
KS ci ratio: 1.051694e-01	ci left: 6.152427e-02	ci right 6.840287e-02	k: 1298	n:20000
PCDH7   20000 perm   5 sec   (4294 perm/sec)   p_kst 6.490000e-02   p_cons 6.040000e-02   p_joint 3.370000e-02

Joint ci ratio: 1.443238e-01	ci left: 2.226551e-02	ci right 2.576084e-02	k: 719	n:30000
Cons ci ratio: 8.145405e-02	ci left: 6.874012e-02	ci right 7.460982e-02	k: 2149	n:30000
KS ci ratio: 8.571830e-02	ci left: 6.236657e-02	ci right 6.798467e-02	k: 1954	n:30000
PCDH7   30000 perm   7 sec   (4076 perm/sec)   p_kst 6.513333e-02   p_cons 7.163333e-02   p_joint 2.396667e-02

Joint ci ratio: 1.198438e-01	ci left: 2.448676e-02	ci right 2.763256e-02	k: 1041	n:40000
Cons ci ratio: 6.983124e-02	ci left: 7.046927e-02	ci right 7.559292e-02	k: 2920	n:40000
KS ci ratio: 7.241855e-02	ci left: 6.577306e-02	ci right 7.073984e-02	k: 2729	n:40000
PCDH7   40000 perm   10 sec   (3933 perm/sec)   p_kst 6.822500e-02   p_cons 7.300000e-02   p_joint 2.602500e-02

Joint ci ratio: 1.062532e-01	ci left: 2.509022e-02	ci right 2.792512e-02	k: 1324	n:50000
Cons ci ratio: 6.262810e-02	ci left: 7.037989e-02	ci right 7.494987e-02	k: 3632	n:50000
KS ci ratio: 6.477835e-02	ci left: 6.602520e-02	ci right 7.046509e-02	k: 3411	n:50000
PCDH7   50000 perm   13 sec   (3838 perm/sec)   p_kst 6.822000e-02   p_cons 7.264000e-02   p_joint 2.648000e-02

Joint ci ratio: 9.022586e-02	ci left: 2.912218e-02	ci right 3.189014e-02	k: 1829	n:60000
Cons ci ratio: 5.721817e-02	ci left: 7.047037e-02	ci right 7.463776e-02	k: 4352	n:60000
KS ci ratio: 5.919956e-02	ci left: 6.608043e-02	ci right 7.012813e-02	k: 4085	n:60000
PCDH7   60000 perm   16 sec   (3754 perm/sec)   p_kst 6.808333e-02   p_cons 7.253333e-02   p_joint 3.048333e-02

Outputting figure to mutsig2_images.part000000000127/PCDH7.7_3865_60000_0.068083_0.072533_0.030483.png
                gene_name: PCDH7
               theta_stop: 0.090 
                    nperm: 60000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 59 percent done.
PCDHA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.299974e-02	ci left: 2.702248e-01	ci right 2.879041e-01	k: 2790	n:10000
Cons ci ratio: 1.741446e-02	ci left: 8.277812e-01	ci right 8.424231e-01	k: 8352	n:10000
KS ci ratio: 1.134786e-01	ci left: 1.005192e-01	ci right 1.127110e-01	k: 1065	n:10000
PCDHA12   10000 perm   2 sec   (5452 perm/sec)   p_kst 1.065000e-01   p_cons 8.352000e-01   p_joint 2.790000e-01

Joint ci ratio: 5.399737e-02	ci left: 2.028876e-01	ci right 2.141972e-01	k: 4170	n:20000
Cons ci ratio: 1.232001e-02	ci left: 8.298328e-01	ci right 8.401696e-01	k: 16701	n:20000
KS ci ratio: 7.984534e-02	ci left: 1.032395e-01	ci right 1.118750e-01	k: 2150	n:20000
PCDHA12   20000 perm   4 sec   (4908 perm/sec)   p_kst 1.075000e-01   p_cons 8.350500e-01   p_joint 2.085000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA12.7_2854_20000_0.1075_0.83505_0.2085.png
                gene_name: PCDHA12
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 60 percent done.
PCDHB11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.618316e-02	ci left: 2.510282e-01	ci right 2.683120e-01	k: 2596	n:10000
Cons ci ratio: 3.333331e-02	ci left: 5.705552e-01	ci right 5.899980e-01	k: 5803	n:10000
KS ci ratio: 8.332662e-02	ci left: 1.735958e-01	ci right 1.887903e-01	k: 1811	n:10000
PCDHB11   10000 perm   2 sec   (5163 perm/sec)   p_kst 1.811000e-01   p_cons 5.803000e-01   p_joint 2.596000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB11.7_2398_10000_0.1811_0.5803_0.2596.png
                gene_name: PCDHB11
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 61 percent done.
PCDHB13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.033322e-01	ci left: 1.192622e-01	ci right 1.323567e-01	k: 1257	n:10000
Cons ci ratio: 9.028637e-02	ci left: 1.513922e-01	ci right 1.658072e-01	k: 1585	n:10000
KS ci ratio: 1.181211e-01	ci left: 9.331107e-02	ci right 1.051236e-01	k: 991	n:10000
PCDHB13   10000 perm   2 sec   (5399 perm/sec)   p_kst 9.910000e-02   p_cons 1.585000e-01   p_joint 1.257000e-01

Joint ci ratio: 7.362152e-02	ci left: 1.195606e-01	ci right 1.287490e-01	k: 2482	n:20000
Cons ci ratio: 6.311159e-02	ci left: 1.565725e-01	ci right 1.668260e-01	k: 3233	n:20000
KS ci ratio: 8.296989e-02	ci left: 9.621914e-02	ci right 1.045974e-01	k: 2007	n:20000
PCDHB13   20000 perm   4 sec   (4755 perm/sec)   p_kst 1.003500e-01   p_cons 1.616500e-01   p_joint 1.241000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB13.7_2401_20000_0.10035_0.16165_0.1241.png
                gene_name: PCDHB13
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 63 percent done.
PCDHB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.315067e-02	ci left: 7.326985e-01	ci right 7.499607e-01	k: 7414	n:10000
Cons ci ratio: 2.243266e-02	ci left: 7.447278e-01	ci right 7.617245e-01	k: 7533	n:10000
KS ci ratio: 3.973867e-02	ci left: 4.832543e-01	ci right 5.029497e-01	k: 4931	n:10000
PCDHB4   10000 perm   2 sec   (5460 perm/sec)   p_kst 4.931000e-01   p_cons 7.533000e-01   p_joint 7.414000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB4.7_2392_10000_0.4931_0.7533_0.7414.png
                gene_name: PCDHB4
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 64 percent done.
PCDHGA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.300083e-02	ci left: 3.441241e-01	ci right 3.629613e-01	k: 3535	n:10000
Cons ci ratio: 4.948217e-02	ci left: 3.759451e-01	ci right 3.951216e-01	k: 3855	n:10000
KS ci ratio: 6.093584e-02	ci left: 2.836945e-01	ci right 3.016265e-01	k: 2926	n:10000
PCDHGA7   10000 perm   2 sec   (5265 perm/sec)   p_kst 2.926000e-01   p_cons 3.855000e-01   p_joint 3.535000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA7.7_2845_10000_0.2926_0.3855_0.3535.png
                gene_name: PCDHGA7
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 65 percent done.
PCDHGB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.242968e-02	ci left: 9.028849e-01	ci right 9.142758e-01	k: 9087	n:10000
KS ci ratio: 1.673316e-02	ci left: 8.386731e-01	ci right 8.529249e-01	k: 8459	n:10000
PCDHGB2   10000 perm   2 sec   (4958 perm/sec)   p_kst 8.459000e-01   p_cons 9.087000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHGB2.7_2827_10000_0.8459_0.9087_1.png
                gene_name: PCDHGB2
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
PCDHA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.475817e-02	ci left: 1.686795e-01	ci right 1.837096e-01	k: 1761	n:10000
Cons ci ratio: 8.481661e-02	ci left: 1.684829e-01	ci right 1.835063e-01	k: 1759	n:10000
KS ci ratio: 6.081832e-02	ci left: 2.844871e-01	ci right 3.024334e-01	k: 2934	n:10000
PCDHA11   10000 perm   2 sec   (5180 perm/sec)   p_kst 2.934000e-01   p_cons 1.759000e-01   p_joint 1.761000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA11.6_2908_10000_0.2934_0.1759_0.1761.png
                gene_name: PCDHA11
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 67 percent done.
PCDHGA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.542238e-02	ci left: 8.591667e-01	ci right 8.726194e-01	k: 8660	n:10000
KS ci ratio: 1.313571e-02	ci left: 8.930299e-01	ci right 9.049365e-01	k: 8991	n:10000
PCDHGA10   10000 perm   2 sec   (5529 perm/sec)   p_kst 8.991000e-01   p_cons 8.660000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHGA10.6_2944_10000_0.8991_0.866_1.png
                gene_name: PCDHGA10
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
PCDHGA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.376657e-02	ci left: 2.120120e-01	ci right 2.283513e-01	k: 2201	n:10000
Cons ci ratio: 6.675595e-02	ci left: 2.477650e-01	ci right 2.649772e-01	k: 2563	n:10000
KS ci ratio: 9.021878e-02	ci left: 1.515885e-01	ci right 1.660108e-01	k: 1587	n:10000
PCDHGA11   10000 perm   2 sec   (5172 perm/sec)   p_kst 1.587000e-01   p_cons 2.563000e-01   p_joint 2.201000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGA11.6_2905_10000_0.1587_0.2563_0.2201.png
                gene_name: PCDHGA11
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 70 percent done.
PCDHGA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.218371e-01	ci left: 8.805737e-02	ci right 9.958050e-02	k: 937	n:10000
Cons ci ratio: 7.078431e-02	ci left: 2.263229e-01	ci right 2.430319e-01	k: 2346	n:10000
KS ci ratio: 1.586988e-01	ci left: 5.292045e-02	ci right 6.213942e-02	k: 574	n:10000
PCDHGA8   10000 perm   2 sec   (5476 perm/sec)   p_kst 5.740000e-02   p_cons 2.346000e-01   p_joint 9.370000e-02

Joint ci ratio: 1.009147e-01	ci left: 6.659926e-02	ci right 7.372632e-02	k: 1402	n:20000
Cons ci ratio: 4.998993e-02	ci left: 2.292368e-01	ci right 2.410403e-01	k: 4702	n:20000
KS ci ratio: 1.101510e-01	ci left: 5.626075e-02	ci right 6.286802e-02	k: 1190	n:20000
PCDHGA8   20000 perm   4 sec   (4949 perm/sec)   p_kst 5.950000e-02   p_cons 2.351000e-01   p_joint 7.010000e-02

Joint ci ratio: 7.555690e-02	ci left: 7.921405e-02	ci right 8.546712e-02	k: 2469	n:30000
Cons ci ratio: 4.012362e-02	ci left: 2.364999e-01	ci right 2.462169e-01	k: 7240	n:30000
KS ci ratio: 9.154307e-02	ci left: 5.495723e-02	ci right 6.026218e-02	k: 1727	n:30000
PCDHGA8   30000 perm   6 sec   (4756 perm/sec)   p_kst 5.756667e-02   p_cons 2.413333e-01   p_joint 8.230000e-02

Outputting figure to mutsig2_images.part000000000127/PCDHGA8.6_2854_30000_0.057567_0.24133_0.0823.png
                gene_name: PCDHGA8
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.085 

Current progress: 71 percent done.
PCDHGC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.073223e-01	ci left: 1.113483e-01	ci right 1.240753e-01	k: 1176	n:10000
Cons ci ratio: 5.519279e-02	ci left: 3.259469e-01	ci right 3.445492e-01	k: 3352	n:10000
KS ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
PCDHGC3   10000 perm   2 sec   (4931 perm/sec)   p_kst 7.270000e-02   p_cons 3.352000e-01   p_joint 1.176000e-01

Joint ci ratio: 7.188020e-02	ci left: 1.247774e-01	ci right 1.341306e-01	k: 2588	n:20000
Cons ci ratio: 3.976983e-02	ci left: 3.203995e-01	ci right 3.334508e-01	k: 6538	n:20000
KS ci ratio: 9.921401e-02	ci left: 6.879694e-02	ci right 7.602796e-02	k: 1447	n:20000
PCDHGC3   20000 perm   5 sec   (4101 perm/sec)   p_kst 7.235000e-02   p_cons 3.269000e-01   p_joint 1.294000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGC3.6_2983_20000_0.07235_0.3269_0.1294.png
                gene_name: PCDHGC3
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 72 percent done.
PCDHA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.946150e-02	ci left: 4.867526e-01	ci right 5.064494e-01	k: 4966	n:10000
Cons ci ratio: 4.685049e-02	ci left: 4.020311e-01	ci right 4.214204e-01	k: 4117	n:10000
KS ci ratio: 4.422483e-02	ci left: 4.301399e-01	ci right 4.496951e-01	k: 4399	n:10000
PCDHA7   10000 perm   2 sec   (5045 perm/sec)   p_kst 4.399000e-01   p_cons 4.117000e-01   p_joint 4.966000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHA7.5_2845_10000_0.4399_0.4117_0.4966.png
                gene_name: PCDHA7
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 73 percent done.
PCDHB14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.255073e-02	ci left: 1.450154e-01	ci right 1.591879e-01	k: 1520	n:10000
Cons ci ratio: 6.661620e-02	ci left: 2.485560e-01	ci right 2.657857e-01	k: 2571	n:10000
KS ci ratio: 8.257621e-02	ci left: 1.762516e-01	ci right 1.915330e-01	k: 1838	n:10000
PCDHB14   10000 perm   2 sec   (4987 perm/sec)   p_kst 1.838000e-01   p_cons 2.571000e-01   p_joint 1.520000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB14.5_2401_10000_0.1838_0.2571_0.152.png
                gene_name: PCDHB14
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 75 percent done.
PCDHB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.340422e-02	ci left: 7.284549e-01	ci right 7.458068e-01	k: 7372	n:10000
Cons ci ratio: 4.664801e-02	ci left: 4.041232e-01	ci right 4.235270e-01	k: 4138	n:10000
KS ci ratio: 3.256613e-02	ci left: 5.818905e-01	ci right 6.012561e-01	k: 5916	n:10000
PCDHB9   10000 perm   2 sec   (5491 perm/sec)   p_kst 5.916000e-01   p_cons 4.138000e-01   p_joint 7.372000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHB9.5_2397_10000_0.5916_0.4138_0.7372.png
                gene_name: PCDHB9
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 76 percent done.
PCDHGA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.095449e-03	ci left: 9.921711e-01	ci right 9.953309e-01	k: 9939	n:10000
KS ci ratio: 1.632061e-02	ci left: 8.451935e-01	ci right 8.592007e-01	k: 8523	n:10000
PCDHGA4   10000 perm   2 sec   (5340 perm/sec)   p_kst 8.523000e-01   p_cons 9.939000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCDHGA4.5_2854_10000_0.8523_0.9939_1.png
                gene_name: PCDHGA4
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
PCID2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.126343e-02	ci left: 9.184254e-01	ci right 9.289262e-01	k: 9238	n:10000
KS ci ratio: 1.588410e-02	ci left: 8.520244e-01	ci right 8.657658e-01	k: 8590	n:10000
PCID2   10000 perm   2 sec   (5960 perm/sec)   p_kst 8.590000e-01   p_cons 9.238000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCID2.5_1256_10000_0.859_0.9238_1.png
                gene_name: PCID2
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
PCDHGB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.463247e-02	ci left: 7.079580e-01	ci right 7.257155e-01	k: 7169	n:10000
Cons ci ratio: 1.635946e-02	ci left: 8.445820e-01	ci right 8.586125e-01	k: 8517	n:10000
KS ci ratio: 3.407791e-02	ci left: 5.597262e-01	ci right 5.792333e-01	k: 5695	n:10000
PCDHGB4   10000 perm   2 sec   (5611 perm/sec)   p_kst 5.695000e-01   p_cons 8.517000e-01   p_joint 7.169000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGB4.4_2803_10000_0.5695_0.8517_0.7169.png
                gene_name: PCDHGB4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 80 percent done.
PCDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.808866e-02	ci left: 3.037185e-01	ci right 3.219906e-01	k: 3128	n:10000
Cons ci ratio: 1.191234e-01	ci left: 9.185115e-02	ci right 1.035844e-01	k: 976	n:10000
KS ci ratio: 2.207662e-02	ci left: 7.506950e-01	ci right 7.675538e-01	k: 7592	n:10000
PCDP1   10000 perm   2 sec   (5646 perm/sec)   p_kst 7.592000e-01   p_cons 9.760000e-02   p_joint 3.128000e-01

Joint ci ratio: 3.015100e-02	ci left: 4.510765e-01	ci right 4.649357e-01	k: 9160	n:20000
Cons ci ratio: 8.406786e-02	ci left: 9.391315e-02	ci right 1.022041e-01	k: 1960	n:20000
KS ci ratio: 1.562127e-02	ci left: 7.529598e-01	ci right 7.648648e-01	k: 15179	n:20000
PCDP1   20000 perm   4 sec   (5074 perm/sec)   p_kst 7.589500e-01   p_cons 9.800000e-02   p_joint 4.580000e-01

Outputting figure to mutsig2_images.part000000000127/PCDP1.4_1729_20000_0.75895_0.098_0.458.png
                gene_name: PCDP1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 81 percent done.
PCSK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.751475e-02	ci left: 1.597376e-01	ci right 1.744569e-01	k: 1670	n:10000
Cons ci ratio: 8.481661e-02	ci left: 1.684829e-01	ci right 1.835063e-01	k: 1759	n:10000
KS ci ratio: 9.834058e-02	ci left: 1.303171e-01	ci right 1.438950e-01	k: 1370	n:10000
PCSK1   10000 perm   2 sec   (5854 perm/sec)   p_kst 1.370000e-01   p_cons 1.759000e-01   p_joint 1.670000e-01

Outputting figure to mutsig2_images.part000000000127/PCSK1.4_2361_10000_0.137_0.1759_0.167.png
                gene_name: PCSK1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 82 percent done.
PCSK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.452240e-03	ci left: 9.904966e-01	ci right 9.940075e-01	k: 9924	n:10000
KS ci ratio: 2.071569e-02	ci left: 7.734721e-01	ci right 7.897635e-01	k: 7817	n:10000
PCSK2   10000 perm   2 sec   (5717 perm/sec)   p_kst 7.817000e-01   p_cons 9.924000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCSK2.4_1965_10000_0.7817_0.9924_1.png
                gene_name: PCSK2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
PCDH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.966580e-02	ci left: 6.262801e-01	ci right 6.452408e-01	k: 6358	n:10000
Cons ci ratio: 4.392995e-02	ci left: 4.334314e-01	ci right 4.530017e-01	k: 4432	n:10000
KS ci ratio: 3.657741e-02	ci left: 5.246647e-01	ci right 5.443152e-01	k: 5345	n:10000
PCDH8   10000 perm   2 sec   (5388 perm/sec)   p_kst 5.345000e-01   p_cons 4.432000e-01   p_joint 6.358000e-01

Outputting figure to mutsig2_images.part000000000127/PCDH8.3_3225_10000_0.5345_0.4432_0.6358.png
                gene_name: PCDH8
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 84 percent done.
PCDHGC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.251794e-02	ci left: 2.732942e-01	ci right 2.910328e-01	k: 2821	n:10000
Cons ci ratio: 6.703721e-02	ci left: 2.461830e-01	ci right 2.633601e-01	k: 2547	n:10000
KS ci ratio: 6.663364e-02	ci left: 2.484571e-01	ci right 2.656846e-01	k: 2570	n:10000
PCDHGC5   10000 perm   2 sec   (5156 perm/sec)   p_kst 2.570000e-01   p_cons 2.547000e-01   p_joint 2.821000e-01

Outputting figure to mutsig2_images.part000000000127/PCDHGC5.3_3028_10000_0.257_0.2547_0.2821.png
                gene_name: PCDHGC5
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 86 percent done.
PCIF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.605580e-03	ci left: 9.498142e-01	ci right 9.581188e-01	k: 9541	n:10000
KS ci ratio: 2.067321e-02	ci left: 7.741813e-01	ci right 7.904539e-01	k: 7824	n:10000
PCIF1   10000 perm   2 sec   (5940 perm/sec)   p_kst 7.824000e-01   p_cons 9.541000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCIF1.3_2175_10000_0.7824_0.9541_1.png
                gene_name: PCIF1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
PCK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.985136e-02	ci left: 2.310633e-01	ci right 2.478887e-01	k: 2394	n:10000
KS ci ratio: 3.607332e-02	ci left: 5.315730e-01	ci right 5.512029e-01	k: 5414	n:10000
PCK1   10000 perm   2 sec   (5936 perm/sec)   p_kst 5.414000e-01   p_cons 2.394000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCK1.3_1905_10000_0.5414_0.2394_1.png
                gene_name: PCK1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
PCK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.096562e-02	ci left: 3.621174e-01	ci right 3.811575e-01	k: 3716	n:10000
Cons ci ratio: 1.032853e-01	ci left: 1.193599e-01	ci right 1.324588e-01	k: 1258	n:10000
KS ci ratio: 4.407262e-02	ci left: 4.318355e-01	ci right 4.513986e-01	k: 4416	n:10000
PCK2   10000 perm   2 sec   (5568 perm/sec)   p_kst 4.416000e-01   p_cons 1.258000e-01   p_joint 3.716000e-01

Joint ci ratio: 3.988759e-02	ci left: 3.191064e-01	ci right 3.321443e-01	k: 6512	n:20000
Cons ci ratio: 7.411652e-02	ci left: 1.181338e-01	ci right 1.272762e-01	k: 2453	n:20000
KS ci ratio: 3.132522e-02	ci left: 4.322063e-01	ci right 4.460114e-01	k: 8782	n:20000
PCK2   20000 perm   4 sec   (5102 perm/sec)   p_kst 4.391000e-01   p_cons 1.226500e-01   p_joint 3.256000e-01

Outputting figure to mutsig2_images.part000000000127/PCK2.3_2055_20000_0.4391_0.12265_0.3256.png
                gene_name: PCK2
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 89 percent done.
PCMTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.451312e-02	ci left: 4.269487e-01	ci right 4.464882e-01	k: 4367	n:10000
Cons ci ratio: 1.797809e-03	ci left: 9.969128e-01	ci right 9.987779e-01	k: 9980	n:10000
KS ci ratio: 6.881274e-02	ci left: 2.364969e-01	ci right 2.534520e-01	k: 2449	n:10000
PCMTD1   10000 perm   1 sec   (6698 perm/sec)   p_kst 2.449000e-01   p_cons 9.980000e-01   p_joint 4.367000e-01

Outputting figure to mutsig2_images.part000000000127/PCMTD1.3_1094_10000_0.2449_0.998_0.4367.png
                gene_name: PCMTD1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 90 percent done.
PCNA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.411493e-01	ci left: 6.652534e-02	ci right 7.672591e-02	k: 715	n:10000
Cons ci ratio: 2.478600e-01	ci left: 2.137124e-02	ci right 2.751008e-02	k: 243	n:10000
KS ci ratio: 5.072644e-02	ci left: 3.643054e-01	ci right 3.833682e-01	k: 3738	n:10000
PCNA   10000 perm   2 sec   (6437 perm/sec)   p_kst 3.738000e-01   p_cons 2.430000e-02   p_joint 7.150000e-02

Joint ci ratio: 1.159572e-01	ci left: 5.090763e-02	ci right 5.722281e-02	k: 1080	n:20000
Cons ci ratio: 1.758224e-01	ci left: 2.211467e-02	ci right 2.642516e-02	k: 484	n:20000
KS ci ratio: 3.564391e-02	ci left: 3.700774e-01	ci right 3.835584e-01	k: 7536	n:20000
PCNA   20000 perm   4 sec   (5679 perm/sec)   p_kst 3.768000e-01   p_cons 2.420000e-02   p_joint 5.400000e-02

Joint ci ratio: 9.219593e-02	ci left: 5.420718e-02	ci right 5.947905e-02	k: 1704	n:30000
Cons ci ratio: 1.417235e-01	ci left: 2.310186e-02	ci right 2.665763e-02	k: 745	n:30000
KS ci ratio: 2.921390e-02	ci left: 3.695506e-01	ci right 3.805403e-01	k: 11251	n:30000
PCNA   30000 perm   6 sec   (5439 perm/sec)   p_kst 3.750333e-01   p_cons 2.483333e-02   p_joint 5.680000e-02

Joint ci ratio: 6.971544e-02	ci left: 7.069064e-02	ci right 7.582152e-02	k: 2929	n:40000
Cons ci ratio: 1.234169e-01	ci left: 2.307982e-02	ci right 2.613973e-02	k: 983	n:40000
KS ci ratio: 2.542001e-02	ci left: 3.680831e-01	ci right 3.775854e-01	k: 14913	n:40000
PCNA   40000 perm   8 sec   (5310 perm/sec)   p_kst 3.728250e-01   p_cons 2.457500e-02   p_joint 7.322500e-02

Joint ci ratio: 8.009067e-02	ci left: 4.388595e-02	ci right 4.756703e-02	k: 2285	n:50000
Cons ci ratio: 1.096587e-01	ci left: 2.355184e-02	ci right 2.630370e-02	k: 1245	n:50000
KS ci ratio: 2.283535e-02	ci left: 3.665638e-01	ci right 3.750512e-01	k: 18540	n:50000
PCNA   50000 perm   10 sec   (5177 perm/sec)   p_kst 3.708000e-01   p_cons 2.490000e-02   p_joint 4.570000e-02

Joint ci ratio: 5.889082e-02	ci left: 6.673795e-02	ci right 7.080388e-02	k: 4125	n:60000
Cons ci ratio: 1.008400e-01	ci left: 2.332648e-02	ci right 2.581980e-02	k: 1473	n:60000
KS ci ratio: 2.082355e-02	ci left: 3.674320e-01	ci right 3.751804e-01	k: 22278	n:60000
PCNA   60000 perm   12 sec   (5056 perm/sec)   p_kst 3.713000e-01   p_cons 2.455000e-02   p_joint 6.875000e-02

Joint ci ratio: 5.065305e-02	ci left: 7.681444e-02	ci right 8.082055e-02	k: 5516	n:70000
Cons ci ratio: 9.379873e-02	ci left: 2.319985e-02	ci right 2.549695e-02	k: 1703	n:70000
KS ci ratio: 1.930494e-02	ci left: 3.670918e-01	ci right 3.742618e-01	k: 25947	n:70000
PCNA   70000 perm   14 sec   (4937 perm/sec)   p_kst 3.706714e-01   p_cons 2.432857e-02   p_joint 7.880000e-02

Outputting figure to mutsig2_images.part000000000127/PCNA.3_810_70000_0.37067_0.024329_0.0788.png
                gene_name: PCNA
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.081 

Current progress: 92 percent done.
PCNXL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.234215e-02	ci left: 7.462447e-01	ci right 7.632067e-01	k: 7548	n:10000
Cons ci ratio: 3.962757e-02	ci left: 4.846536e-01	ci right 5.043496e-01	k: 4945	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
PCNXL3   10000 perm   2 sec   (4450 perm/sec)   p_kst 1   p_cons 4.945000e-01   p_joint 7.548000e-01

Outputting figure to mutsig2_images.part000000000127/PCNXL3.3_6245_10000_1_0.4945_0.7548.png
                gene_name: PCNXL3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 93 percent done.
PCGF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.142247e-02	ci left: 9.163640e-01	ci right 9.269888e-01	k: 9218	n:10000
Cons ci ratio: 3.232413e-02	ci left: 5.855029e-01	ci right 6.048417e-01	k: 5952	n:10000
KS ci ratio: 4.299881e-02	ci left: 4.440068e-01	ci right 4.636202e-01	k: 4538	n:10000
PCGF1   10000 perm   1 sec   (6812 perm/sec)   p_kst 4.538000e-01   p_cons 5.952000e-01   p_joint 9.218000e-01

Outputting figure to mutsig2_images.part000000000127/PCGF1.2_816_10000_0.4538_0.5952_0.9218.png
                gene_name: PCGF1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 94 percent done.
PCGF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.067756e-03	ci left: 9.649925e-01	ci right 9.719311e-01	k: 9686	n:10000
KS ci ratio: 2.309032e-02	ci left: 7.337090e-01	ci right 7.509496e-01	k: 7424	n:10000
PCGF2   10000 perm   1 sec   (6809 perm/sec)   p_kst 7.424000e-01   p_cons 9.686000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000127/PCGF2.2_1071_10000_0.7424_0.9686_1.png
                gene_name: PCGF2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
PCGF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.232463e-02	ci left: 9.043236e-01	ci right 9.156362e-01	k: 9101	n:10000
Cons ci ratio: 4.328612e-02	ci left: 4.407139e-01	ci right 4.603149e-01	k: 4505	n:10000
KS ci ratio: 5.046744e-02	ci left: 3.666925e-01	ci right 3.857796e-01	k: 3762	n:10000
PCGF3   10000 perm   1 sec   (6923 perm/sec)   p_kst 3.762000e-01   p_cons 4.505000e-01   p_joint 9.101000e-01

Outputting figure to mutsig2_images.part000000000127/PCGF3.2_761_10000_0.3762_0.4505_0.9101.png
                gene_name: PCGF3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 96 percent done.
PCGF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.342919e-02	ci left: 5.691511e-01	ci right 5.886029e-01	k: 5789	n:10000
Cons ci ratio: 8.023269e-02	ci left: 1.849114e-01	ci right 2.004680e-01	k: 1926	n:10000
KS ci ratio: 7.346716e-02	ci left: 2.133931e-01	ci right 2.297694e-01	k: 2215	n:10000
PCGF5   10000 perm   1 sec   (6986 perm/sec)   p_kst 2.215000e-01   p_cons 1.926000e-01   p_joint 5.789000e-01

Outputting figure to mutsig2_images.part000000000127/PCGF5.2_807_10000_0.2215_0.1926_0.5789.png
                gene_name: PCGF5
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 98 percent done.
PCMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.056393e-02	ci left: 7.760050e-01	ci right 7.922292e-01	k: 7842	n:10000
Cons ci ratio: 3.172396e-02	ci left: 5.945361e-01	ci right 6.138031e-01	k: 6042	n:10000
KS ci ratio: 3.795959e-02	ci left: 5.061517e-01	ci right 5.258389e-01	k: 5160	n:10000
PCMT1   10000 perm   1 sec   (6735 perm/sec)   p_kst 5.160000e-01   p_cons 6.042000e-01   p_joint 7.842000e-01

Outputting figure to mutsig2_images.part000000000127/PCMT1.2_886_10000_0.516_0.6042_0.7842.png
                gene_name: PCMT1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 99 percent done.
PCOLCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.591170e-02	ci left: 6.867776e-01	ci right 7.049082e-01	k: 6959	n:10000
Cons ci ratio: 3.820347e-02	ci left: 5.029509e-01	ci right 5.226417e-01	k: 5128	n:10000
KS ci ratio: 2.198608e-02	ci left: 7.522125e-01	ci right 7.690354e-01	k: 7607	n:10000
PCOLCE   10000 perm   1 sec   (6707 perm/sec)   p_kst 7.607000e-01   p_cons 5.128000e-01   p_joint 6.959000e-01

Outputting figure to mutsig2_images.part000000000127/PCOLCE.2_1386_10000_0.7607_0.5128_0.6959.png
                gene_name: PCOLCE
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000127
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 127 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1648>
Subject: Job 9894075: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1648>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000128> was used as the working directory.
Started at Sat Oct  6 00:23:56 2012
Results reported at Sat Oct  6 00:32:33 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000128.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000128.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 128  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000128.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    534.40 sec.
    Max Memory :      3475 MB
    Max Swap   :      5940 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
128
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 128
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 128: processing genes 11450 - 11539
Calculating significance of each gene.
Using projection method.
11450	PCSK4	1
11451	PCSK5	3.209100e-01
11452	PCSK6	9.331248e-01
11453	PCSK7	8.891086e-01
11454	PCSK9	9.780839e-01
11455	PCTP	3.088798e-01
11456	PCYOX1	4.711167e-01
11457	PCYOX1L	7.028739e-01
11458	PCYT1A	1.636101e-02
11459	PCYT1B	1.169648e-01
11460	PCYT2	1
11461	PDAP1	2.279772e-01
11462	PDC	2.208135e-01
11463	PDCD1	1
11464	PDCD10	1
11465	PDCD11	6.760021e-01
11466	PDCD1LG2	3.451757e-01
11467	PDCD2	1
11468	PDCD2L	5.779216e-01
11469	PDCD4	9.074011e-01
11470	PDCD5	1.150570e-01
11471	PDCD6	7.447964e-02
11472	PDCD6IP	5.854666e-01
11473	PDCD7	6.722828e-01
11474	PDCL	2.900245e-01
11475	PDCL2	1
11476	PDCL3	1.805795e-01
11477	PDDC1	1
11478	PDE10A	5.073504e-03
11479	PDE11A	2.541324e-01
11480	PDE12	8.023568e-01
11481	PDE1A	3.186580e-01
11482	PDE1B	5.934438e-01
11483	PDE1C	1.573422e-02
11484	PDE2A	1
11485	PDE3A	4.379449e-01
11486	PDE3B	8.618923e-01
11487	PDE4A	5.695035e-01
11488	PDE4B	4.909484e-01
11489	PDE4C	8.815977e-01
11490	PDE4D	1.933110e-01
11491	PDE4DIP	1.160542e-01
11492	PDE5A	8.438202e-01
11493	PDE6A	1.565034e-01
11494	PDE6B	5.711107e-01
11495	PDE6C	1.008802e-01
11496	PDE6D	5.054121e-01
11497	PDE6G	1
11498	PDE6H	1
11499	PDE7A	4.792827e-01
11500	PDE7B	1.410790e-01
11501	PDE8A	9.775924e-01
11502	PDE8B	2.392861e-01
11503	PDE9A	1.549201e-01
11504	PDGFA	4.536524e-01
11505	PDGFB	1
11506	PDGFC	3.907713e-01
11507	PDGFD	2.414240e-01
11508	PDGFRA	2.443730e-02
11509	PDGFRB	5.123329e-01
11510	PDGFRL	8.600887e-01
11511	PDHA1	9.541879e-02
11512	PDHA2	3.001028e-02
11513	PDHB	5.826475e-01
11514	PDHX	9.073551e-01
11515	PDIA2	1
11516	PDIA3	7.254491e-01
11517	PDIA4	2.033157e-01
11518	PDIA5	2.040168e-01
11519	PDIA6	8.307649e-01
11520	PDIK1L	5.741536e-01
11521	PDILT	1.991147e-01
11522	PDK1	6.352814e-01
11523	PDK2	7.966151e-01
11524	PDK3	8.931065e-01
11525	PDK4	2.713295e-01
11526	PDLIM1	5.383996e-01
11527	PDLIM2	6.802164e-01
11528	PDLIM3	7.880543e-01
11529	PDLIM4	5.405423e-01
11530	PDLIM5	7.085438e-02
11531	PDLIM7	8.485550e-01
11532	PDP1	5.569590e-01
11533	PDP2	9.272901e-01
11534	PDPK1	6.541544e-01
11535	PDPN	5.345868e-01
11536	PDPR	9.295299e-01
11537	PDRG1	5.023199e-01
11538	PDS5A	2.634183e-01
11539	PDS5B	5.876431e-01
Done

Running MutSig 2:
Scatter job 128: processing genes 11450 - 11539
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PDGFRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.581851e-02	ci left: 8.530443e-01	ci right 8.667453e-01	k: 8600	n:10000
Cons ci ratio: 2.192571e-02	ci left: 7.532242e-01	ci right 7.700231e-01	k: 7617	n:10000
KS ci ratio: 2.286102e-02	ci left: 7.375496e-01	ci right 7.547068e-01	k: 7462	n:10000
PDGFRA   10000 perm   2 sec   (4220 perm/sec)   p_kst 7.462000e-01   p_cons 7.617000e-01   p_joint 8.600000e-01

Outputting figure to mutsig2_images.part000000000128/PDGFRA.17_3358_10000_0.7462_0.7617_0.86.png
                gene_name: PDGFRA
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 2 percent done.
PDE4DIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.400175e-02	ci left: 8.805295e-01	ci right 8.930442e-01	k: 8869	n:10000
Cons ci ratio: 2.981969e-02	ci left: 6.238676e-01	ci right 6.428546e-01	k: 6334	n:10000
KS ci ratio: 2.962739e-02	ci left: 6.268832e-01	ci right 6.458373e-01	k: 6364	n:10000
PDE4DIP   10000 perm   3 sec   (3516 perm/sec)   p_kst 6.364000e-01   p_cons 6.334000e-01   p_joint 8.869000e-01

Outputting figure to mutsig2_images.part000000000128/PDE4DIP.15_8813_10000_0.6364_0.6334_0.8869.png
                gene_name: PDE4DIP
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 3 percent done.
PDE10A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.112967e-02	ci left: 3.606257e-01	ci right 3.796501e-01	k: 3701	n:10000
Cons ci ratio: 4.368164e-02	ci left: 4.362244e-01	ci right 4.558070e-01	k: 4460	n:10000
KS ci ratio: 6.659877e-02	ci left: 2.486549e-01	ci right 2.658867e-01	k: 2572	n:10000
PDE10A   10000 perm   2 sec   (5056 perm/sec)   p_kst 2.572000e-01   p_cons 4.460000e-01   p_joint 3.701000e-01

Outputting figure to mutsig2_images.part000000000128/PDE10A.11_2499_10000_0.2572_0.446_0.3701.png
                gene_name: PDE10A
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 5 percent done.
PDE6C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.045098e-02	ci left: 2.280016e-01	ci right 2.447522e-01	k: 2363	n:10000
Cons ci ratio: 7.889140e-02	ci left: 1.901300e-01	ci right 2.058463e-01	k: 1979	n:10000
KS ci ratio: 8.252124e-02	ci left: 1.764483e-01	ci right 1.917362e-01	k: 1840	n:10000
PDE6C   10000 perm   2 sec   (4688 perm/sec)   p_kst 1.840000e-01   p_cons 1.979000e-01   p_joint 2.363000e-01

Outputting figure to mutsig2_images.part000000000128/PDE6C.10_2665_10000_0.184_0.1979_0.2363.png
                gene_name: PDE6C
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 7 percent done.
PDE1C
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.391093e-02	ci left: 8.818604e-01	ci right 8.943125e-01	k: 8882	n:10000
Cons ci ratio: 4.322499e-02	ci left: 4.414124e-01	ci right 4.610161e-01	k: 4512	n:10000
KS ci ratio: 1.208994e-02	ci left: 9.075108e-01	ci right 9.186472e-01	k: 9132	n:10000
PDE1C   10000 perm   2 sec   (5001 perm/sec)   p_kst 9.132000e-01   p_cons 4.512000e-01   p_joint 8.882000e-01

Outputting figure to mutsig2_images.part000000000128/PDE1C.8_1973_10000_0.9132_0.4512_0.8882.png
                gene_name: PDE1C
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 8 percent done.
PDS5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.883062e-02	ci left: 3.822151e-01	ci right 4.014480e-01	k: 3918	n:10000
Cons ci ratio: 7.662992e-02	ci left: 1.993910e-01	ci right 2.153799e-01	k: 2073	n:10000
KS ci ratio: 4.262781e-02	ci left: 4.482980e-01	ci right 4.679264e-01	k: 4581	n:10000
PDS5A   10000 perm   2 sec   (4846 perm/sec)   p_kst 4.581000e-01   p_cons 2.073000e-01   p_joint 3.918000e-01

Outputting figure to mutsig2_images.part000000000128/PDS5A.9_4175_10000_0.4581_0.2073_0.3918.png
                gene_name: PDS5A
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 10 percent done.
PDE11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.203560e-01	ci left: 9.009981e-02	ci right 1.017368e-01	k: 958	n:10000
Cons ci ratio: 2.431726e-02	ci left: 7.132062e-01	ci right 7.308642e-01	k: 7221	n:10000
KS ci ratio: 1.557042e-01	ci left: 5.494237e-02	ci right 6.431621e-02	k: 595	n:10000
PDE11A   10000 perm   2 sec   (5177 perm/sec)   p_kst 5.950000e-02   p_cons 7.221000e-01   p_joint 9.580000e-02

Joint ci ratio: 7.904471e-02	ci left: 1.051552e-01	ci right 1.138587e-01	k: 2189	n:20000
Cons ci ratio: 1.741816e-02	ci left: 7.106002e-01	ci right 7.231367e-01	k: 14338	n:20000
KS ci ratio: 1.102002e-01	ci left: 5.621205e-02	ci right 6.281674e-02	k: 1189	n:20000
PDE11A   20000 perm   4 sec   (4720 perm/sec)   p_kst 5.945000e-02   p_cons 7.169000e-01   p_joint 1.094500e-01

Joint ci ratio: 6.075164e-02	ci left: 1.181521e-01	ci right 1.255880e-01	k: 3655	n:30000
Cons ci ratio: 1.427454e-02	ci left: 7.102567e-01	ci right 7.205016e-01	k: 21462	n:30000
KS ci ratio: 9.041039e-02	ci left: 5.629459e-02	ci right 6.165788e-02	k: 1768	n:30000
PDE11A   30000 perm   7 sec   (4528 perm/sec)   p_kst 5.893333e-02   p_cons 7.154000e-01   p_joint 1.218333e-01

Outputting figure to mutsig2_images.part000000000128/PDE11A.8_3048_30000_0.058933_0.7154_0.12183.png
                gene_name: PDE11A
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 12 percent done.
PDHA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.050121e-02	ci left: 4.737614e-01	ci right 4.934481e-01	k: 4836	n:10000
Cons ci ratio: 3.305359e-02	ci left: 5.746674e-01	ci right 5.940834e-01	k: 5844	n:10000
KS ci ratio: 5.744651e-02	ci left: 3.084797e-01	ci right 3.268266e-01	k: 3176	n:10000
PDHA2   10000 perm   2 sec   (5614 perm/sec)   p_kst 3.176000e-01   p_cons 5.844000e-01   p_joint 4.836000e-01

Outputting figure to mutsig2_images.part000000000128/PDHA2.8_1171_10000_0.3176_0.5844_0.4836.png
                gene_name: PDHA2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 13 percent done.
PDS5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.757229e-02	ci left: 8.252379e-01	ci right 8.399678e-01	k: 8327	n:10000
KS ci ratio: 2.417799e-02	ci left: 7.155281e-01	ci right 7.331411e-01	k: 7244	n:10000
PDS5B   10000 perm   2 sec   (4342 perm/sec)   p_kst 7.244000e-01   p_cons 8.327000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDS5B.8_4480_10000_0.7244_0.8327_1.png
                gene_name: PDS5B
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
PDE6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.375935e-02	ci left: 5.643380e-01	ci right 5.838188e-01	k: 5741	n:10000
Cons ci ratio: 5.193970e-02	ci left: 3.533674e-01	ci right 3.723125e-01	k: 3628	n:10000
KS ci ratio: 5.426490e-02	ci left: 3.334940e-01	ci right 3.521976e-01	k: 3428	n:10000
PDE6A   10000 perm   2 sec   (5201 perm/sec)   p_kst 3.428000e-01   p_cons 3.628000e-01   p_joint 5.741000e-01

Outputting figure to mutsig2_images.part000000000128/PDE6A.7_2671_10000_0.3428_0.3628_0.5741.png
                gene_name: PDE6A
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 17 percent done.
PDE8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.062704e-02	ci left: 2.271129e-01	ci right 2.438415e-01	k: 2354	n:10000
Cons ci ratio: 9.367929e-02	ci left: 1.419757e-01	ci right 1.560294e-01	k: 1489	n:10000
KS ci ratio: 5.363278e-02	ci left: 3.387587e-01	ci right 3.575298e-01	k: 3481	n:10000
PDE8B   10000 perm   2 sec   (5836 perm/sec)   p_kst 3.481000e-01   p_cons 1.489000e-01   p_joint 2.354000e-01

Outputting figure to mutsig2_images.part000000000128/PDE8B.7_2746_10000_0.3481_0.1489_0.2354.png
                gene_name: PDE8B
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 18 percent done.
PDILT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.008330e-02	ci left: 7.840118e-01	ci right 8.000177e-01	k: 7921	n:10000
KS ci ratio: 1.132723e-02	ci left: 9.176007e-01	ci right 9.281513e-01	k: 9230	n:10000
PDILT   10000 perm   2 sec   (5910 perm/sec)   p_kst 9.230000e-01   p_cons 7.921000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDILT.7_1799_10000_0.923_0.7921_1.png
                gene_name: PDILT
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
PCSK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.779080e-02	ci left: 1.945626e-01	ci right 2.104111e-01	k: 2024	n:10000
Cons ci ratio: 3.786094e-02	ci left: 5.074522e-01	ci right 5.271377e-01	k: 5173	n:10000
KS ci ratio: 1.219806e-01	ci left: 8.786290e-02	ci right 9.937509e-02	k: 935	n:10000
PCSK5   10000 perm   2 sec   (5305 perm/sec)   p_kst 9.350000e-02   p_cons 5.173000e-01   p_joint 2.024000e-01

Joint ci ratio: 6.918798e-02	ci left: 1.334942e-01	ci right 1.431112e-01	k: 2765	n:20000
Cons ci ratio: 2.658396e-02	ci left: 5.138989e-01	ci right 5.277950e-01	k: 10417	n:20000
KS ci ratio: 8.545162e-02	ci left: 9.111751e-02	ci right 9.930061e-02	k: 1903	n:20000
PCSK5   20000 perm   4 sec   (4813 perm/sec)   p_kst 9.515000e-02   p_cons 5.208500e-01   p_joint 1.382500e-01

Outputting figure to mutsig2_images.part000000000128/PCSK5.6_2826_20000_0.09515_0.52085_0.13825.png
                gene_name: PCSK5
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 22 percent done.
PDCD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.520736e-02	ci left: 4.193710e-01	ci right 4.388703e-01	k: 4291	n:10000
Cons ci ratio: 1.140663e-02	ci left: 9.165701e-01	ci right 9.271826e-01	k: 9220	n:10000
KS ci ratio: 7.534834e-02	ci left: 2.049112e-01	ci right 2.210563e-01	k: 2129	n:10000
PDCD11   10000 perm   2 sec   (4569 perm/sec)   p_kst 2.129000e-01   p_cons 9.220000e-01   p_joint 4.291000e-01

Outputting figure to mutsig2_images.part000000000128/PDCD11.6_5756_10000_0.2129_0.922_0.4291.png
                gene_name: PDCD11
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 23 percent done.
PDE5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.211153e-02	ci left: 1.779240e-01	ci right 1.932596e-01	k: 1855	n:10000
Cons ci ratio: 2.789543e-02	ci left: 6.544443e-01	ci right 6.730602e-01	k: 6638	n:10000
KS ci ratio: 1.041386e-01	ci left: 1.176005e-01	ci right 1.306194e-01	k: 1240	n:10000
PDE5A   10000 perm   2 sec   (5278 perm/sec)   p_kst 1.240000e-01   p_cons 6.638000e-01   p_joint 1.855000e-01

Joint ci ratio: 6.481724e-02	ci left: 1.495658e-01	ci right 1.596349e-01	k: 3091	n:20000
Cons ci ratio: 1.982089e-02	ci left: 6.550445e-01	ci right 6.682085e-01	k: 13233	n:20000
KS ci ratio: 7.357079e-02	ci left: 1.197082e-01	ci right 1.289013e-01	k: 2485	n:20000
PDE5A   20000 perm   4 sec   (4792 perm/sec)   p_kst 1.242500e-01   p_cons 6.616500e-01   p_joint 1.545500e-01

Outputting figure to mutsig2_images.part000000000128/PDE5A.6_2742_20000_0.12425_0.66165_0.15455.png
                gene_name: PDE5A
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 25 percent done.
PDE9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.762269e-02	ci left: 8.244242e-01	ci right 8.391819e-01	k: 8319	n:10000
Cons ci ratio: 4.227754e-02	ci left: 4.523904e-01	ci right 4.720316e-01	k: 4622	n:10000
KS ci ratio: 3.776252e-02	ci left: 5.087527e-01	ci right 5.284364e-01	k: 5186	n:10000
PDE9A   10000 perm   2 sec   (5611 perm/sec)   p_kst 5.186000e-01   p_cons 4.622000e-01   p_joint 8.319000e-01

Outputting figure to mutsig2_images.part000000000128/PDE9A.6_1942_10000_0.5186_0.4622_0.8319.png
                gene_name: PDE9A
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 27 percent done.
PDGFRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.707186e-02	ci left: 8.332766e-01	ci right 8.477245e-01	k: 8406	n:10000
Cons ci ratio: 1.211278e-02	ci left: 9.072023e-01	ci right 9.183559e-01	k: 9129	n:10000
KS ci ratio: 3.094038e-02	ci left: 6.064853e-01	ci right 6.256470e-01	k: 6161	n:10000
PDGFRB   10000 perm   2 sec   (5144 perm/sec)   p_kst 6.161000e-01   p_cons 9.129000e-01   p_joint 8.406000e-01

Outputting figure to mutsig2_images.part000000000128/PDGFRB.6_3409_10000_0.6161_0.9129_0.8406.png
                gene_name: PDGFRB
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 28 percent done.
PDLIM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.707555e-02	ci left: 1.975185e-01	ci right 2.134534e-01	k: 2054	n:10000
Cons ci ratio: 1.747133e-02	ci left: 8.268655e-01	ci right 8.415392e-01	k: 8343	n:10000
KS ci ratio: 1.140784e-01	ci left: 9.954457e-02	ci right 1.116863e-01	k: 1055	n:10000
PDLIM5   10000 perm   2 sec   (5816 perm/sec)   p_kst 1.055000e-01   p_cons 8.343000e-01   p_joint 2.054000e-01

Joint ci ratio: 5.073785e-02	ci left: 2.239840e-01	ci right 2.356946e-01	k: 4596	n:20000
Cons ci ratio: 1.225737e-02	ci left: 8.312502e-01	ci right 8.415518e-01	k: 16729	n:20000
KS ci ratio: 8.109712e-02	ci left: 1.003422e-01	ci right 1.088731e-01	k: 2091	n:20000
PDLIM5   20000 perm   4 sec   (5242 perm/sec)   p_kst 1.045500e-01   p_cons 8.364500e-01   p_joint 2.298000e-01

Outputting figure to mutsig2_images.part000000000128/PDLIM5.6_1999_20000_0.10455_0.83645_0.2298.png
                gene_name: PDLIM5
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 30 percent done.
PCYT1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.460845e-02	ci left: 8.715273e-01	ci right 8.844516e-01	k: 8781	n:10000
Cons ci ratio: 2.871829e-02	ci left: 6.412631e-01	ci right 6.600491e-01	k: 6507	n:10000
KS ci ratio: 2.862361e-02	ci left: 6.427720e-01	ci right 6.615393e-01	k: 6522	n:10000
PCYT1A   10000 perm   2 sec   (6604 perm/sec)   p_kst 6.522000e-01   p_cons 6.507000e-01   p_joint 8.781000e-01

Outputting figure to mutsig2_images.part000000000128/PCYT1A.5_1136_10000_0.6522_0.6507_0.8781.png
                gene_name: PCYT1A
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 32 percent done.
PCYT1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.342511e-02	ci left: 2.675518e-01	ci right 2.851786e-01	k: 2763	n:10000
Cons ci ratio: 1.128868e-01	ci left: 1.014940e-01	ci right 1.137357e-01	k: 1075	n:10000
KS ci ratio: 4.410837e-02	ci left: 4.314365e-01	ci right 4.509978e-01	k: 4412	n:10000
PCYT1B   10000 perm   2 sec   (6050 perm/sec)   p_kst 4.412000e-01   p_cons 1.075000e-01   p_joint 2.763000e-01

Joint ci ratio: 4.603834e-02	ci left: 2.598855e-01	ci right 2.721825e-01	k: 5320	n:20000
Cons ci ratio: 8.127078e-02	ci left: 9.994945e-02	ci right 1.084660e-01	k: 2083	n:20000
KS ci ratio: 3.138251e-02	ci left: 4.313080e-01	ci right 4.451100e-01	k: 8764	n:20000
PCYT1B   20000 perm   4 sec   (5375 perm/sec)   p_kst 4.382000e-01   p_cons 1.041500e-01   p_joint 2.660000e-01

Outputting figure to mutsig2_images.part000000000128/PCYT1B.5_1246_20000_0.4382_0.10415_0.266.png
                gene_name: PCYT1B
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 33 percent done.
PDE3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.983924e-02	ci left: 7.880677e-01	ci right 8.039595e-01	k: 7961	n:10000
Cons ci ratio: 2.895871e-02	ci left: 6.374410e-01	ci right 6.562734e-01	k: 6469	n:10000
KS ci ratio: 2.610772e-02	ci left: 6.835521e-01	ci right 7.017356e-01	k: 6927	n:10000
PDE3A   10000 perm   2 sec   (4949 perm/sec)   p_kst 6.927000e-01   p_cons 6.469000e-01   p_joint 7.961000e-01

Outputting figure to mutsig2_images.part000000000128/PDE3A.5_3490_10000_0.6927_0.6469_0.7961.png
                gene_name: PDE3A
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 35 percent done.
PDE4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.368008e-02	ci left: 3.383613e-01	ci right 3.571274e-01	k: 3477	n:10000
Cons ci ratio: 1.064023e-01	ci left: 1.131062e-01	ci right 1.259164e-01	k: 1194	n:10000
KS ci ratio: 3.297882e-02	ci left: 5.757708e-01	ci right 5.951794e-01	k: 5855	n:10000
PDE4B   10000 perm   2 sec   (4978 perm/sec)   p_kst 5.855000e-01   p_cons 1.194000e-01   p_joint 3.477000e-01

Joint ci ratio: 4.309874e-02	ci left: 2.862506e-01	ci right 2.989098e-01	k: 5851	n:20000
Cons ci ratio: 7.609137e-02	ci left: 1.126747e-01	ci right 1.216370e-01	k: 2342	n:20000
KS ci ratio: 2.332088e-02	ci left: 5.786355e-01	ci right 5.923396e-01	k: 11710	n:20000
PDE4B   20000 perm   4 sec   (4621 perm/sec)   p_kst 5.855000e-01   p_cons 1.171000e-01   p_joint 2.925500e-01

Outputting figure to mutsig2_images.part000000000128/PDE4B.5_2633_20000_0.5855_0.1171_0.29255.png
                gene_name: PDE4B
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 37 percent done.
PDE6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.124191e-01	ci left: 1.022739e-01	ci right 1.145552e-01	k: 1083	n:10000
Cons ci ratio: 9.561004e-02	ci left: 1.369772e-01	ci right 1.508309e-01	k: 1438	n:10000
KS ci ratio: 1.012706e-01	ci left: 1.236626e-01	ci right 1.369535e-01	k: 1302	n:10000
PDE6B   10000 perm   2 sec   (4957 perm/sec)   p_kst 1.302000e-01   p_cons 1.438000e-01   p_joint 1.083000e-01

Joint ci ratio: 7.391069e-02	ci left: 1.187242e-01	ci right 1.278856e-01	k: 2465	n:20000
Cons ci ratio: 6.824597e-02	ci left: 1.367463e-01	ci right 1.464582e-01	k: 2831	n:20000
KS ci ratio: 7.226545e-02	ci left: 1.235960e-01	ci right 1.329123e-01	k: 2564	n:20000
PDE6B   20000 perm   4 sec   (4492 perm/sec)   p_kst 1.282000e-01   p_cons 1.415500e-01   p_joint 1.232500e-01

Outputting figure to mutsig2_images.part000000000128/PDE6B.5_2653_20000_0.1282_0.14155_0.12325.png
                gene_name: PDE6B
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 38 percent done.
PDHA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.740679e-02	ci left: 3.087773e-01	ci right 3.271288e-01	k: 3179	n:10000
Cons ci ratio: 1.778619e-02	ci left: 8.217801e-01	ci right 8.366276e-01	k: 8293	n:10000
KS ci ratio: 7.649036e-02	ci left: 1.999823e-01	ci right 2.159882e-01	k: 2079	n:10000
PDHA1   10000 perm   2 sec   (5587 perm/sec)   p_kst 2.079000e-01   p_cons 8.293000e-01   p_joint 3.179000e-01

Outputting figure to mutsig2_images.part000000000128/PDHA1.5_1356_10000_0.2079_0.8293_0.3179.png
                gene_name: PDHA1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 40 percent done.
PDIA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.002993e-01	ci left: 1.258149e-01	ci right 1.391999e-01	k: 1324	n:10000
Cons ci ratio: 3.797479e-02	ci left: 5.059517e-01	ci right 5.256391e-01	k: 5158	n:10000
KS ci ratio: 1.980390e-01	ci left: 3.395684e-02	ci right 4.151552e-02	k: 376	n:10000
PDIA4   10000 perm   2 sec   (5398 perm/sec)   p_kst 3.760000e-02   p_cons 5.158000e-01   p_joint 1.324000e-01

Joint ci ratio: 8.116213e-02	ci left: 1.001949e-01	ci right 1.087205e-01	k: 2088	n:20000
Cons ci ratio: 2.708084e-02	ci left: 5.046461e-01	ci right 5.185505e-01	k: 10232	n:20000
KS ci ratio: 1.442662e-01	ci left: 3.302649e-02	ci right 3.820965e-02	k: 711	n:20000
PDIA4   20000 perm   4 sec   (4845 perm/sec)   p_kst 3.555000e-02   p_cons 5.116000e-01   p_joint 1.044000e-01

Joint ci ratio: 7.974886e-02	ci left: 7.155329e-02	ci right 7.752942e-02	k: 2235	n:30000
Cons ci ratio: 2.203538e-02	ci left: 5.076597e-01	ci right 5.190044e-01	k: 15400	n:30000
KS ci ratio: 1.193672e-01	ci left: 3.262511e-02	ci right 3.679896e-02	k: 1040	n:30000
PDIA4   30000 perm   6 sec   (4632 perm/sec)   p_kst 3.466667e-02   p_cons 5.133333e-01   p_joint 7.450000e-02

Joint ci ratio: 7.472117e-02	ci left: 6.196455e-02	ci right 6.679892e-02	k: 2574	n:40000
Cons ci ratio: 1.918042e-02	ci left: 5.058881e-01	ci right 5.157103e-01	k: 20432	n:40000
KS ci ratio: 1.046714e-01	ci left: 3.209918e-02	ci right 3.566891e-02	k: 1354	n:40000
PDIA4   40000 perm   9 sec   (4443 perm/sec)   p_kst 3.385000e-02   p_cons 5.108000e-01   p_joint 6.435000e-02

Joint ci ratio: 6.380043e-02	ci left: 6.795592e-02	ci right 7.245413e-02	k: 3509	n:50000
Cons ci ratio: 1.714257e-02	ci left: 5.067879e-01	ci right 5.155708e-01	k: 25559	n:50000
KS ci ratio: 9.416197e-02	ci left: 3.192039e-02	ci right 3.509407e-02	k: 1674	n:50000
PDIA4   50000 perm   12 sec   (4345 perm/sec)   p_kst 3.348000e-02   p_cons 5.111800e-01   p_joint 7.018000e-02

Outputting figure to mutsig2_images.part000000000128/PDIA4.5_1978_50000_0.03348_0.51118_0.07018.png
                gene_name: PDIA4
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.072 

Current progress: 42 percent done.
PDCD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.544133e-02	ci left: 3.239612e-01	ci right 3.425360e-01	k: 3332	n:10000
Cons ci ratio: 5.676458e-02	ci left: 3.136389e-01	ci right 3.320644e-01	k: 3228	n:10000
KS ci ratio: 5.514330e-02	ci left: 3.263440e-01	ci right 3.449518e-01	k: 3356	n:10000
PDCD6   10000 perm   2 sec   (6501 perm/sec)   p_kst 3.356000e-01   p_cons 3.228000e-01   p_joint 3.332000e-01

Outputting figure to mutsig2_images.part000000000128/PDCD6.4_600_10000_0.3356_0.3228_0.3332.png
                gene_name: PDCD6
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 43 percent done.
PDCD6IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.163696e-02	ci left: 4.599781e-01	ci right 4.796395e-01	k: 4698	n:10000
Cons ci ratio: 8.249378e-02	ci left: 1.765467e-01	ci right 1.918378e-01	k: 1841	n:10000
KS ci ratio: 5.105301e-02	ci left: 3.613218e-01	ci right 3.803535e-01	k: 3708	n:10000
PDCD6IP   10000 perm   2 sec   (5633 perm/sec)   p_kst 3.708000e-01   p_cons 1.841000e-01   p_joint 4.698000e-01

Outputting figure to mutsig2_images.part000000000128/PDCD6IP.4_2694_10000_0.3708_0.1841_0.4698.png
                gene_name: PDCD6IP
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 45 percent done.
PDE1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.310239e-02	ci left: 7.335069e-01	ci right 7.507518e-01	k: 7422	n:10000
KS ci ratio: 1.848532e-02	ci left: 8.103969e-01	ci right 8.256173e-01	k: 8181	n:10000
PDE1A   10000 perm   2 sec   (6222 perm/sec)   p_kst 8.181000e-01   p_cons 7.422000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDE1A.4_1742_10000_0.8181_0.7422_1.png
                gene_name: PDE1A
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
PDE4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.648198e-02	ci left: 5.259661e-01	ci right 5.456130e-01	k: 5358	n:10000
Cons ci ratio: 3.805849e-02	ci left: 5.048513e-01	ci right 5.245401e-01	k: 5147	n:10000
KS ci ratio: 5.046744e-02	ci left: 3.666925e-01	ci right 3.857796e-01	k: 3762	n:10000
PDE4A   10000 perm   2 sec   (5446 perm/sec)   p_kst 3.762000e-01   p_cons 5.147000e-01   p_joint 5.358000e-01

Outputting figure to mutsig2_images.part000000000128/PDE4A.4_3178_10000_0.3762_0.5147_0.5358.png
                gene_name: PDE4A
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 48 percent done.
PDE4D
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.595002e-02	ci left: 5.332753e-01	ci right 5.528996e-01	k: 5431	n:10000
KS ci ratio: 3.974662e-02	ci left: 4.831544e-01	ci right 5.028497e-01	k: 4930	n:10000
PDE4D   10000 perm   2 sec   (5707 perm/sec)   p_kst 4.930000e-01   p_cons 5.431000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDE4D.3_2821_10000_0.493_0.5431_1.png
                gene_name: PDE4D
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
PDE7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.169949e-01	ci left: 2.816365e-02	ci right 3.511272e-02	k: 315	n:10000
Cons ci ratio: 5.295449e-02	ci left: 3.445215e-01	ci right 3.633636e-01	k: 3539	n:10000
KS ci ratio: 3.512569e-01	ci left: 1.014137e-02	ci right 1.454954e-02	k: 122	n:10000
PDE7B   10000 perm   2 sec   (5878 perm/sec)   p_kst 1.220000e-02   p_cons 3.539000e-01   p_joint 3.150000e-02

Joint ci ratio: 1.461933e-01	ci left: 3.215814e-02	ci right 3.727829e-02	k: 693	n:20000
Cons ci ratio: 3.747716e-02	ci left: 3.469211e-01	ci right 3.602215e-01	k: 7071	n:20000
KS ci ratio: 2.396559e-01	ci left: 1.161730e-02	ci right 1.482653e-02	k: 263	n:20000
PDE7B   20000 perm   4 sec   (5313 perm/sec)   p_kst 1.315000e-02   p_cons 3.535500e-01   p_joint 3.465000e-02

Joint ci ratio: 1.433074e-01	ci left: 2.258711e-02	ci right 2.610583e-02	k: 729	n:30000
Cons ci ratio: 3.048427e-02	ci left: 3.498817e-01	ci right 3.607463e-01	k: 10659	n:30000
KS ci ratio: 1.878983e-01	ci left: 1.295527e-02	ci right 1.567332e-02	k: 428	n:30000
PDE7B   30000 perm   6 sec   (5131 perm/sec)   p_kst 1.426667e-02   p_cons 3.553000e-01   p_joint 2.430000e-02

Joint ci ratio: 1.222126e-01	ci left: 2.354057e-02	ci right 2.662890e-02	k: 1002	n:40000
Cons ci ratio: 2.644679e-02	ci left: 3.498103e-01	ci right 3.592108e-01	k: 14180	n:40000
KS ci ratio: 1.622941e-01	ci left: 1.320738e-02	ci right 1.556390e-02	k: 574	n:40000
PDE7B   40000 perm   8 sec   (4977 perm/sec)   p_kst 1.435000e-02   p_cons 3.545000e-01   p_joint 2.505000e-02

Joint ci ratio: 8.854457e-02	ci left: 3.604738e-02	ci right 3.940657e-02	k: 1885	n:50000
Cons ci ratio: 2.372751e-02	ci left: 3.489094e-01	ci right 3.573076e-01	k: 17655	n:50000
KS ci ratio: 1.512260e-01	ci left: 1.225646e-02	ci right 1.428063e-02	k: 662	n:50000
PDE7B   50000 perm   10 sec   (4848 perm/sec)   p_kst 1.324000e-02   p_cons 3.531000e-01   p_joint 3.770000e-02

Joint ci ratio: 9.055817e-02	ci left: 2.891027e-02	ci right 3.166875e-02	k: 1816	n:60000
Cons ci ratio: 2.162716e-02	ci left: 3.499729e-01	ci right 3.576412e-01	k: 21228	n:60000
KS ci ratio: 1.392613e-01	ci left: 1.212501e-02	ci right 1.395588e-02	k: 781	n:60000
PDE7B   60000 perm   13 sec   (4742 perm/sec)   p_kst 1.301667e-02   p_cons 3.538000e-01   p_joint 3.026667e-02

Joint ci ratio: 9.662594e-02	ci left: 2.186034e-02	ci right 2.409373e-02	k: 1607	n:70000
Cons ci ratio: 2.001171e-02	ci left: 3.505134e-01	ci right 3.576130e-01	k: 24784	n:70000
KS ci ratio: 1.299694e-01	ci left: 1.199419e-02	ci right 1.367512e-02	k: 897	n:70000
PDE7B   70000 perm   15 sec   (4643 perm/sec)   p_kst 1.281429e-02   p_cons 3.540571e-01   p_joint 2.295714e-02

Joint ci ratio: 9.211134e-02	ci left: 2.111684e-02	ci right 2.316801e-02	k: 1770	n:80000
Cons ci ratio: 1.874572e-02	ci left: 3.500991e-01	ci right 3.567365e-01	k: 28273	n:80000
KS ci ratio: 1.218333e-01	ci left: 1.199613e-02	ci right 1.356450e-02	k: 1021	n:80000
PDE7B   80000 perm   18 sec   (4551 perm/sec)   p_kst 1.276250e-02   p_cons 3.534125e-01   p_joint 2.212500e-02

Joint ci ratio: 8.632152e-02	ci left: 2.143220e-02	ci right 2.337653e-02	k: 2015	n:90000
Cons ci ratio: 1.767503e-02	ci left: 3.502540e-01	ci right 3.565110e-01	k: 31804	n:90000
KS ci ratio: 1.144504e-01	ci left: 1.212976e-02	ci right 1.361300e-02	k: 1157	n:90000
PDE7B   90000 perm   20 sec   (4459 perm/sec)   p_kst 1.285556e-02   p_cons 3.533778e-01   p_joint 2.238889e-02

Joint ci ratio: 8.249661e-02	ci left: 2.116833e-02	ci right 2.299953e-02	k: 2207	n:100000
Cons ci ratio: 1.672805e-02	ci left: 3.515045e-01	ci right 3.574440e-01	k: 35447	n:100000
KS ci ratio: 1.082651e-01	ci left: 1.223896e-02	ci right 1.364950e-02	k: 1293	n:100000
PDE7B   100000 perm   23 sec   (4376 perm/sec)   p_kst 1.293000e-02   p_cons 3.544700e-01   p_joint 2.207000e-02

Joint ci ratio: 7.161103e-02	ci left: 2.556772e-02	ci right 2.747554e-02	k: 2916	n:110000
Cons ci ratio: 1.595267e-02	ci left: 3.515545e-01	ci right 3.572168e-01	k: 38982	n:110000
KS ci ratio: 9.925410e-02	ci left: 1.328737e-02	ci right 1.468388e-02	k: 1537	n:110000
PDE7B   110000 perm   26 sec   (4303 perm/sec)   p_kst 1.397273e-02   p_cons 3.543818e-01   p_joint 2.650909e-02

Outputting figure to mutsig2_images.part000000000128/PDE7B.4_1405_110000_0.013973_0.35438_0.026509.png
                gene_name: PDE7B
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.027 

Current progress: 52 percent done.
PDIA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.409273e-02	ci left: 1.709408e-01	ci right 1.860470e-01	k: 1784	n:10000
Cons ci ratio: 1.414779e-02	ci left: 8.783802e-01	ci right 8.909947e-01	k: 8848	n:10000
KS ci ratio: 1.514271e-01	ci left: 5.802650e-02	ci right 6.763012e-02	k: 627	n:10000
PDIA5   10000 perm   2 sec   (6079 perm/sec)   p_kst 6.270000e-02   p_cons 8.848000e-01   p_joint 1.784000e-01

Joint ci ratio: 6.163978e-02	ci left: 1.629902e-01	ci right 1.734064e-01	k: 3363	n:20000
Cons ci ratio: 1.026831e-02	ci left: 8.747556e-01	ci right 8.838338e-01	k: 17587	n:20000
KS ci ratio: 1.069412e-01	ci left: 5.957399e-02	ci right 6.635376e-02	k: 1258	n:20000
PDIA5   20000 perm   4 sec   (5459 perm/sec)   p_kst 6.290000e-02   p_cons 8.793500e-01   p_joint 1.681500e-01

Joint ci ratio: 6.993391e-02	ci left: 9.147502e-02	ci right 9.813702e-02	k: 2843	n:30000
Cons ci ratio: 8.365963e-03	ci left: 8.760667e-01	ci right 8.834596e-01	k: 26394	n:30000
KS ci ratio: 8.745376e-02	ci left: 6.001521e-02	ci right 6.553650e-02	k: 1882	n:30000
PDIA5   30000 perm   6 sec   (5218 perm/sec)   p_kst 6.273333e-02   p_cons 8.798000e-01   p_joint 9.476667e-02

Outputting figure to mutsig2_images.part000000000128/PDIA5.4_1628_30000_0.062733_0.8798_0.094767.png
                gene_name: PDIA5
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.098 

Current progress: 53 percent done.
PCSK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.154273e-01	ci left: 9.740099e-02	ci right 1.094311e-01	k: 1033	n:10000
Cons ci ratio: 3.229731e-02	ci left: 5.859043e-01	ci right 6.052400e-01	k: 5956	n:10000
KS ci ratio: 1.956251e-01	ci left: 3.481398e-02	ci right 4.245779e-02	k: 385	n:10000
PCSK6   10000 perm   2 sec   (5671 perm/sec)   p_kst 3.850000e-02   p_cons 5.956000e-01   p_joint 1.033000e-01

Joint ci ratio: 8.140165e-02	ci left: 9.965488e-02	ci right 1.081607e-01	k: 2077	n:20000
Cons ci ratio: 2.340024e-02	ci left: 5.769818e-01	ci right 5.906938e-01	k: 11677	n:20000
KS ci ratio: 1.348270e-01	ci left: 3.780997e-02	ci right 4.332462e-02	k: 810	n:20000
PCSK6   20000 perm   4 sec   (5098 perm/sec)   p_kst 4.050000e-02   p_cons 5.838500e-01   p_joint 1.038500e-01

Joint ci ratio: 5.809461e-02	ci left: 1.279254e-01	ci right 1.356127e-01	k: 3952	n:30000
Cons ci ratio: 1.907842e-02	ci left: 5.789656e-01	ci right 5.901513e-01	k: 17537	n:30000
KS ci ratio: 1.111140e-01	ci left: 3.761587e-02	ci right 4.207381e-02	k: 1194	n:30000
PCSK6   30000 perm   6 sec   (4873 perm/sec)   p_kst 3.980000e-02   p_cons 5.845667e-01   p_joint 1.317333e-01

Joint ci ratio: 6.537315e-02	ci left: 7.977245e-02	ci right 8.518835e-02	k: 3298	n:40000
Cons ci ratio: 1.660490e-02	ci left: 5.772984e-01	ci right 5.869897e-01	k: 23286	n:40000
KS ci ratio: 9.784887e-02	ci left: 3.668440e-02	ci right 4.048296e-02	k: 1542	n:40000
PCSK6   40000 perm   8 sec   (4728 perm/sec)   p_kst 3.855000e-02   p_cons 5.821500e-01   p_joint 8.245000e-02

Outputting figure to mutsig2_images.part000000000128/PCSK6.3_3475_40000_0.03855_0.58215_0.08245.png
                gene_name: PCSK6
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.085 

Current progress: 55 percent done.
PCYOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.352252e-03	ci left: 9.712187e-01	ci right 9.775008e-01	k: 9745	n:10000
Cons ci ratio: 2.292739e-02	ci left: 7.364378e-01	ci right 7.536193e-01	k: 7451	n:10000
KS ci ratio: 1.460163e-02	ci left: 8.716295e-01	ci right 8.845493e-01	k: 8782	n:10000
PCYOX1   10000 perm   2 sec   (6481 perm/sec)   p_kst 8.782000e-01   p_cons 7.451000e-01   p_joint 9.745000e-01

Outputting figure to mutsig2_images.part000000000128/PCYOX1.3_1542_10000_0.8782_0.7451_0.9745.png
                gene_name: PCYOX1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 57 percent done.
PDE1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.020807e-02	ci left: 2.886490e-01	ci right 3.066690e-01	k: 2976	n:10000
Cons ci ratio: 4.128764e-02	ci left: 4.641722e-01	ci right 4.838429e-01	k: 4740	n:10000
KS ci ratio: 5.815626e-02	ci left: 3.032226e-01	ci right 3.214868e-01	k: 3123	n:10000
PDE1B   10000 perm   2 sec   (6377 perm/sec)   p_kst 3.123000e-01   p_cons 4.740000e-01   p_joint 2.976000e-01

Outputting figure to mutsig2_images.part000000000128/PDE1B.3_1724_10000_0.3123_0.474_0.2976.png
                gene_name: PDE1B
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 58 percent done.
PDE3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.302053e-01	ci left: 7.766482e-02	ci right 8.857947e-02	k: 830	n:10000
Cons ci ratio: 1.910384e-01	ci left: 3.652992e-02	ci right 4.434069e-02	k: 403	n:10000
KS ci ratio: 7.409025e-02	ci left: 2.105324e-01	ci right 2.268318e-01	k: 2186	n:10000
PDE3B   10000 perm   2 sec   (5509 perm/sec)   p_kst 2.186000e-01   p_cons 4.030000e-02   p_joint 8.300000e-02

Joint ci ratio: 7.988696e-02	ci left: 1.031412e-01	ci right 1.117733e-01	k: 2148	n:20000
Cons ci ratio: 1.376830e-01	ci left: 3.626248e-02	ci right 4.167261e-02	k: 778	n:20000
KS ci ratio: 5.210073e-02	ci left: 2.148197e-01	ci right 2.263616e-01	k: 4411	n:20000
PDE3B   20000 perm   4 sec   (4984 perm/sec)   p_kst 2.205500e-01   p_cons 3.890000e-02   p_joint 1.074000e-01

Joint ci ratio: 7.537415e-02	ci left: 7.957438e-02	ci right 8.584004e-02	k: 2480	n:30000
Cons ci ratio: 1.132021e-01	ci left: 3.625368e-02	ci right 4.063629e-02	k: 1152	n:30000
KS ci ratio: 4.284352e-02	ci left: 2.134709e-01	ci right 2.228504e-01	k: 6544	n:30000
PDE3B   30000 perm   6 sec   (4757 perm/sec)   p_kst 2.181333e-01   p_cons 3.840000e-02   p_joint 8.266667e-02

Joint ci ratio: 5.647443e-02	ci left: 1.044559e-01	ci right 1.105512e-01	k: 4299	n:40000
Cons ci ratio: 9.926255e-02	ci left: 3.565933e-02	ci right 3.940819e-02	k: 1500	n:40000
KS ci ratio: 3.715720e-02	ci left: 2.136142e-01	ci right 2.217268e-01	k: 8706	n:40000
PDE3B   40000 perm   9 sec   (4591 perm/sec)   p_kst 2.176500e-01   p_cons 3.750000e-02   p_joint 1.074750e-01

Outputting figure to mutsig2_images.part000000000128/PDE3B.3_3403_40000_0.21765_0.0375_0.10748.png
                gene_name: PDE3B
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 60 percent done.
PDE7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.436877e-02	ci left: 8.751064e-01	ci right 8.878705e-01	k: 8816	n:10000
KS ci ratio: 3.614601e-02	ci left: 5.305716e-01	ci right 5.502048e-01	k: 5404	n:10000
PDE7A   10000 perm   2 sec   (5858 perm/sec)   p_kst 5.404000e-01   p_cons 8.816000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDE7A.3_1597_10000_0.5404_0.8816_1.png
                gene_name: PDE7A
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
PDGFC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.088933e-02	ci left: 3.628135e-01	ci right 3.818609e-01	k: 3723	n:10000
KS ci ratio: 2.423853e-02	ci left: 7.145185e-01	ci right 7.321512e-01	k: 7234	n:10000
PDGFC   10000 perm   2 sec   (6628 perm/sec)   p_kst 7.234000e-01   p_cons 3.723000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDGFC.3_1062_10000_0.7234_0.3723_1.png
                gene_name: PDGFC
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
PDGFD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.896889e-02	ci left: 1.288487e-01	ci right 1.423643e-01	k: 1355	n:10000
Cons ci ratio: 5.654465e-02	ci left: 3.153259e-01	ci right 3.337764e-01	k: 3245	n:10000
KS ci ratio: 1.247955e-01	ci left: 8.416945e-02	ci right 9.547082e-02	k: 897	n:10000
PDGFD   10000 perm   2 sec   (6472 perm/sec)   p_kst 8.970000e-02   p_cons 3.245000e-01   p_joint 1.355000e-01

Joint ci ratio: 7.800854e-02	ci left: 1.077101e-01	ci right 1.165030e-01	k: 2241	n:20000
Cons ci ratio: 4.045284e-02	ci left: 3.129897e-01	ci right 3.259629e-01	k: 6389	n:20000
KS ci ratio: 8.580069e-02	ci left: 9.043103e-02	ci right 9.858730e-02	k: 1889	n:20000
PDGFD   20000 perm   4 sec   (5541 perm/sec)   p_kst 9.445000e-02   p_cons 3.194500e-01   p_joint 1.120500e-01

Outputting figure to mutsig2_images.part000000000128/PDGFD.3_1141_20000_0.09445_0.31945_0.11205.png
                gene_name: PDGFD
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 65 percent done.
PDK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.314463e-02	ci left: 7.327995e-01	ci right 7.500596e-01	k: 7415	n:10000
Cons ci ratio: 4.216718e-02	ci left: 4.536882e-01	ci right 4.733331e-01	k: 4635	n:10000
KS ci ratio: 6.772759e-03	ci left: 9.676262e-01	ci right 9.742956e-01	k: 9711	n:10000
PDK4   10000 perm   2 sec   (5548 perm/sec)   p_kst 9.711000e-01   p_cons 4.635000e-01   p_joint 7.415000e-01

Outputting figure to mutsig2_images.part000000000128/PDK4.3_1280_10000_0.9711_0.4635_0.7415.png
                gene_name: PDK4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 67 percent done.
PDLIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.849801e-02	ci left: 2.381767e-01	ci right 2.551711e-01	k: 2466	n:10000
Cons ci ratio: 1.299497e-01	ci left: 7.795586e-02	ci right 8.888826e-02	k: 833	n:10000
KS ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
PDLIM1   10000 perm   2 sec   (6309 perm/sec)   p_kst 4.564000e-01   p_cons 8.330000e-02   p_joint 2.466000e-01

Joint ci ratio: 4.134397e-02	ci left: 3.036430e-01	ci right 3.165123e-01	k: 6201	n:20000
Cons ci ratio: 8.962294e-02	ci left: 8.337417e-02	ci right 9.124630e-02	k: 1745	n:20000
KS ci ratio: 2.994235e-02	ci left: 4.545221e-01	ci right 4.683891e-01	k: 9229	n:20000
PDLIM1   20000 perm   3 sec   (5751 perm/sec)   p_kst 4.614500e-01   p_cons 8.725000e-02   p_joint 3.100500e-01

Outputting figure to mutsig2_images.part000000000128/PDLIM1.3_1018_20000_0.46145_0.08725_0.31005.png
                gene_name: PDLIM1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 68 percent done.
PDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.573306e-02	ci left: 8.543705e-01	ci right 8.680184e-01	k: 8613	n:10000
Cons ci ratio: 1.085878e-02	ci left: 9.235838e-01	ci right 9.337648e-01	k: 9288	n:10000
KS ci ratio: 2.284895e-02	ci left: 7.377518e-01	ci right 7.549045e-01	k: 7464	n:10000
PDP1   10000 perm   2 sec   (6349 perm/sec)   p_kst 7.464000e-01   p_cons 9.288000e-01   p_joint 8.613000e-01

Outputting figure to mutsig2_images.part000000000128/PDP1.3_1799_10000_0.7464_0.9288_0.8613.png
                gene_name: PDP1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 70 percent done.
PCSK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.178078e-02	ci left: 7.556526e-01	ci right 7.723934e-01	k: 7641	n:10000
KS ci ratio: 9.751082e-03	ci left: 9.370311e-01	ci right 9.463095e-01	k: 9418	n:10000
PCSK7   10000 perm   2 sec   (6072 perm/sec)   p_kst 9.418000e-01   p_cons 7.641000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PCSK7.2_2418_10000_0.9418_0.7641_1.png
                gene_name: PCSK7
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
PCTP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.814923e-02	ci left: 8.158839e-01	ci right 8.309272e-01	k: 8235	n:10000
KS ci ratio: 1.435501e-02	ci left: 8.753109e-01	ci right 8.880658e-01	k: 8818	n:10000
PCTP   10000 perm   1 sec   (7097 perm/sec)   p_kst 8.818000e-01   p_cons 8.235000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PCTP.2_669_10000_0.8818_0.8235_1.png
                gene_name: PCTP
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
PCYOX1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.878481e-02	ci left: 2.986610e-01	ci right 3.168511e-01	k: 3077	n:10000
Cons ci ratio: 1.024491e-01	ci left: 1.211198e-01	ci right 1.342979e-01	k: 1276	n:10000
KS ci ratio: 3.118942e-02	ci left: 6.026690e-01	ci right 6.218656e-01	k: 6123	n:10000
PCYOX1L   10000 perm   1 sec   (6746 perm/sec)   p_kst 6.123000e-01   p_cons 1.276000e-01   p_joint 3.077000e-01

Joint ci ratio: 4.560614e-02	ci left: 2.635581e-01	ci right 2.759089e-01	k: 5394	n:20000
Cons ci ratio: 7.280364e-02	ci left: 1.219718e-01	ci right 1.312370e-01	k: 2531	n:20000
KS ci ratio: 2.199272e-02	ci left: 6.068607e-01	ci right 6.204062e-01	k: 12273	n:20000
PCYOX1L   20000 perm   3 sec   (5947 perm/sec)   p_kst 6.136500e-01   p_cons 1.265500e-01   p_joint 2.697000e-01

Outputting figure to mutsig2_images.part000000000128/PCYOX1L.2_1509_20000_0.61365_0.12655_0.2697.png
                gene_name: PCYOX1L
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 75 percent done.
PDAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.783640e-02	ci left: 8.209666e-01	ci right 8.358415e-01	k: 8285	n:10000
KS ci ratio: 5.649311e-02	ci left: 3.157228e-01	ci right 3.341792e-01	k: 3249	n:10000
PDAP1   10000 perm   1 sec   (7227 perm/sec)   p_kst 3.249000e-01   p_cons 8.285000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDAP1.2_570_10000_0.3249_0.8285_1.png
                gene_name: PDAP1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
PDC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.552671e-02	ci left: 6.931293e-01	ci right 7.111528e-01	k: 7022	n:10000
Cons ci ratio: 1.093240e-02	ci left: 9.226548e-01	ci right 9.328943e-01	k: 9279	n:10000
KS ci ratio: 3.097309e-02	ci left: 6.059831e-01	ci right 6.251495e-01	k: 6156	n:10000
PDC   10000 perm   1 sec   (7128 perm/sec)   p_kst 6.156000e-01   p_cons 9.279000e-01   p_joint 7.022000e-01

Outputting figure to mutsig2_images.part000000000128/PDC.2_753_10000_0.6156_0.9279_0.7022.png
                gene_name: PDC
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 78 percent done.
PDCD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.033536e-02	ci left: 6.158280e-01	ci right 6.348989e-01	k: 6254	n:10000
KS ci ratio: 4.768235e-02	ci left: 3.935649e-01	ci right 4.128915e-01	k: 4032	n:10000
PDCD5   10000 perm   1 sec   (7288 perm/sec)   p_kst 4.032000e-01   p_cons 6.254000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDCD5.2_402_10000_0.4032_0.6254_1.png
                gene_name: PDCD5
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
PDCL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.176376e-02	ci left: 5.939338e-01	ci right 6.132058e-01	k: 6036	n:10000
Cons ci ratio: 3.407791e-02	ci left: 5.597262e-01	ci right 5.792333e-01	k: 5695	n:10000
KS ci ratio: 2.512457e-02	ci left: 6.997857e-01	ci right 7.176926e-01	k: 7088	n:10000
PDCL   10000 perm   1 sec   (7069 perm/sec)   p_kst 7.088000e-01   p_cons 5.695000e-01   p_joint 6.036000e-01

Outputting figure to mutsig2_images.part000000000128/PDCL.2_918_10000_0.7088_0.5695_0.6036.png
                gene_name: PDCL
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 82 percent done.
PDCL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.380955e-02	ci left: 2.118147e-01	ci right 2.281487e-01	k: 2199	n:10000
Cons ci ratio: 8.502186e-02	ci left: 1.677948e-01	ci right 1.827948e-01	k: 1752	n:10000
KS ci ratio: 2.594231e-02	ci left: 6.862735e-01	ci right 7.044125e-01	k: 6954	n:10000
PDCL3   10000 perm   1 sec   (7094 perm/sec)   p_kst 6.954000e-01   p_cons 1.752000e-01   p_joint 2.199000e-01

Outputting figure to mutsig2_images.part000000000128/PDCL3.2_744_10000_0.6954_0.1752_0.2199.png
                gene_name: PDCL3
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 83 percent done.
PDE12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.443237e-02	ci left: 7.112884e-01	ci right 7.289832e-01	k: 7202	n:10000
KS ci ratio: 3.417529e-02	ci left: 5.583228e-01	ci right 5.778375e-01	k: 5681	n:10000
PDE12   10000 perm   2 sec   (6534 perm/sec)   p_kst 5.681000e-01   p_cons 7.202000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDE12.2_1842_10000_0.5681_0.7202_1.png
                gene_name: PDE12
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
PDE4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.826174e-02	ci left: 3.877898e-01	ci right 4.070700e-01	k: 3974	n:10000
Cons ci ratio: 6.523286e-02	ci left: 2.565673e-01	ci right 2.739696e-01	k: 2652	n:10000
KS ci ratio: 5.368008e-02	ci left: 3.383613e-01	ci right 3.571274e-01	k: 3477	n:10000
PDE4C   10000 perm   2 sec   (6280 perm/sec)   p_kst 3.477000e-01   p_cons 2.652000e-01   p_joint 3.974000e-01

Outputting figure to mutsig2_images.part000000000128/PDE4C.2_2349_10000_0.3477_0.2652_0.3974.png
                gene_name: PDE4C
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 87 percent done.
PDHB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.697687e-03	ci left: 9.376532e-01	ci right 9.468871e-01	k: 9424	n:10000
Cons ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
KS ci ratio: 9.839580e-03	ci left: 9.359947e-01	ci right 9.453466e-01	k: 9408	n:10000
PDHB   10000 perm   1 sec   (7211 perm/sec)   p_kst 9.408000e-01   p_cons 1.309000e-01   p_joint 9.424000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 6.017243e-02	ci left: 1.697565e-01	ci right 1.803381e-01	k: 3500	n:20000
KS ci ratio: 7.014487e-03	ci left: 9.364654e-01	ci right 9.431061e-01	k: 18797	n:20000
PDHB   20000 perm   3 sec   (6269 perm/sec)   p_kst 9.398500e-01   p_cons 1.750000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDHB.2_1120_20000_0.93985_0.175_1.png
                gene_name: PDHB
               theta_stop: 0.060 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
PDHX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.689143e-01	ci left: 4.676942e-02	ci right 5.549443e-02	k: 510	n:10000
Cons ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
KS ci ratio: 2.483886e-02	ci left: 7.045272e-01	ci right 7.223483e-01	k: 7135	n:10000
PDHX   10000 perm   2 sec   (5771 perm/sec)   p_kst 7.135000e-01   p_cons 9.800000e-03   p_joint 5.100000e-02

Joint ci ratio: 9.323836e-02	ci left: 7.740166e-02	ci right 8.502062e-02	k: 1623	n:20000
Cons ci ratio: 2.924988e-01	ci left: 7.598793e-03	ci right 1.024694e-02	k: 177	n:20000
KS ci ratio: 1.750400e-02	ci left: 7.085872e-01	ci right 7.211502e-01	k: 14298	n:20000
PDHX   20000 perm   4 sec   (5442 perm/sec)   p_kst 7.149000e-01   p_cons 8.850000e-03   p_joint 8.115000e-02

Joint ci ratio: 1.321349e-01	ci left: 2.661392e-02	ci right 3.041145e-02	k: 854	n:30000
Cons ci ratio: 2.406518e-01	ci left: 7.711591e-03	ci right 9.851836e-03	k: 262	n:30000
KS ci ratio: 1.419045e-02	ci left: 7.126695e-01	ci right 7.228883e-01	k: 21534	n:30000
PDHX   30000 perm   6 sec   (5322 perm/sec)   p_kst 7.178000e-01   p_cons 8.733333e-03   p_joint 2.846667e-02

Joint ci ratio: 1.614416e-01	ci left: 1.335138e-02	ci right 1.571987e-02	k: 580	n:40000
Cons ci ratio: 2.152233e-01	ci left: 7.339583e-03	ci right 9.132911e-03	k: 328	n:40000
KS ci ratio: 1.226583e-02	ci left: 7.141398e-01	ci right 7.229784e-01	k: 28743	n:40000
PDHX   40000 perm   8 sec   (5202 perm/sec)   p_kst 7.185750e-01   p_cons 8.200000e-03   p_joint 1.450000e-02

Joint ci ratio: 1.256298e-01	ci left: 1.789884e-02	ci right 2.031744e-02	k: 954	n:50000
Cons ci ratio: 1.935128e-01	ci left: 7.352032e-03	ci right 8.945866e-03	k: 406	n:50000
KS ci ratio: 1.097729e-02	ci left: 7.143747e-01	ci right 7.222799e-01	k: 35917	n:50000
PDHX   50000 perm   10 sec   (5094 perm/sec)   p_kst 7.183400e-01   p_cons 8.120000e-03   p_joint 1.908000e-02

Joint ci ratio: 9.906292e-02	ci left: 2.417199e-02	ci right 2.670753e-02	k: 1525	n:60000
Cons ci ratio: 1.767255e-01	ci left: 7.414259e-03	ci right 8.867254e-03	k: 487	n:60000
KS ci ratio: 1.002309e-02	ci left: 7.146317e-01	ci right 7.218472e-01	k: 43095	n:60000
PDHX   60000 perm   12 sec   (4995 perm/sec)   p_kst 7.182500e-01   p_cons 8.116667e-03   p_joint 2.541667e-02

Joint ci ratio: 7.011594e-02	ci left: 4.124219e-02	ci right 4.425301e-02	k: 2991	n:70000
Cons ci ratio: 1.629443e-01	ci left: 7.531534e-03	ci right 8.881138e-03	k: 573	n:70000
KS ci ratio: 9.283680e-03	ci left: 7.147222e-01	ci right 7.214026e-01	k: 50265	n:70000
PDHX   70000 perm   14 sec   (4896 perm/sec)   p_kst 7.180714e-01   p_cons 8.185714e-03   p_joint 4.272857e-02

Joint ci ratio: 7.865490e-02	ci left: 2.892682e-02	ci right 3.130742e-02	k: 2408	n:80000
Cons ci ratio: 1.521868e-01	ci left: 7.598747e-03	ci right 8.862306e-03	k: 657	n:80000
KS ci ratio: 8.674367e-03	ci left: 7.153945e-01	ci right 7.216396e-01	k: 57482	n:80000
PDHX   80000 perm   17 sec   (4805 perm/sec)   p_kst 7.185250e-01   p_cons 8.212500e-03   p_joint 3.010000e-02

Joint ci ratio: 6.187735e-02	ci left: 4.136642e-02	ci right 4.401871e-02	k: 3841	n:90000
Cons ci ratio: 1.437036e-01	ci left: 7.610447e-03	ci right 8.799357e-03	k: 737	n:90000
KS ci ratio: 8.168449e-03	ci left: 7.160620e-01	ci right 7.219461e-01	k: 64711	n:90000
PDHX   90000 perm   19 sec   (4716 perm/sec)   p_kst 7.190111e-01   p_cons 8.188889e-03   p_joint 4.267778e-02

Joint ci ratio: 5.867971e-02	ci left: 4.146504e-02	ci right 4.398157e-02	k: 4271	n:100000
Cons ci ratio: 1.365814e-01	ci left: 7.611714e-03	ci right 8.737094e-03	k: 816	n:100000
KS ci ratio: 7.744693e-03	ci left: 7.164535e-01	ci right 7.220338e-01	k: 71925	n:100000
PDHX   100000 perm   22 sec   (4631 perm/sec)   p_kst 7.192500e-01   p_cons 8.160000e-03   p_joint 4.271000e-02

Joint ci ratio: 5.607495e-02	ci left: 4.134233e-02	ci right 4.373641e-02	k: 4678	n:110000
Cons ci ratio: 1.305700e-01	ci left: 7.596350e-03	ci right 8.666191e-03	k: 893	n:110000
KS ci ratio: 7.375054e-03	ci left: 7.170902e-01	ci right 7.224073e-01	k: 79173	n:110000
PDHX   110000 perm   24 sec   (4548 perm/sec)   p_kst 7.197545e-01   p_cons 8.118182e-03   p_joint 4.252727e-02

Joint ci ratio: 5.368969e-02	ci left: 4.139022e-02	ci right 4.368195e-02	k: 5103	n:120000
Cons ci ratio: 1.247069e-01	ci left: 7.657126e-03	ci right 8.683523e-03	k: 979	n:120000
KS ci ratio: 7.070348e-03	ci left: 7.166730e-01	ci right 7.217664e-01	k: 86307	n:120000
PDHX   120000 perm   27 sec   (4476 perm/sec)   p_kst 7.192250e-01   p_cons 8.158333e-03   p_joint 4.252500e-02

Joint ci ratio: 5.150724e-02	ci left: 4.155414e-02	ci right 4.375863e-02	k: 5544	n:130000
Cons ci ratio: 1.187294e-01	ci left: 7.821431e-03	ci right 8.816072e-03	k: 1080	n:130000
KS ci ratio: 6.793781e-03	ci left: 7.167253e-01	ci right 7.216188e-01	k: 93493	n:130000
PDHX   130000 perm   29 sec   (4408 perm/sec)   p_kst 7.191769e-01   p_cons 8.307692e-03   p_joint 4.264615e-02

Joint ci ratio: 5.379967e-02	ci left: 3.555191e-02	ci right 3.752449e-02	k: 5114	n:140000
Cons ci ratio: 1.151688e-01	ci left: 7.734244e-03	ci right 8.686294e-03	k: 1148	n:140000
KS ci ratio: 6.542227e-03	ci left: 7.170885e-01	ci right 7.218024e-01	k: 100723	n:140000
PDHX   140000 perm   32 sec   (4340 perm/sec)   p_kst 7.194500e-01   p_cons 8.200000e-03   p_joint 3.652857e-02

Joint ci ratio: 5.781797e-02	ci left: 2.887298e-02	ci right 3.059860e-02	k: 4459	n:150000
Cons ci ratio: 1.114497e-01	ci left: 7.723889e-03	ci right 8.641941e-03	k: 1226	n:150000
KS ci ratio: 6.320341e-03	ci left: 7.171722e-01	ci right 7.217260e-01	k: 107918	n:150000
PDHX   150000 perm   35 sec   (4275 perm/sec)   p_kst 7.194533e-01   p_cons 8.173333e-03   p_joint 2.972667e-02

Joint ci ratio: 5.034161e-02	ci left: 3.559257e-02	ci right 3.743677e-02	k: 5841	n:160000
Cons ci ratio: 1.077779e-01	ci left: 7.757839e-03	ci right 8.647620e-03	k: 1311	n:160000
KS ci ratio: 6.121495e-03	ci left: 7.171225e-01	ci right 7.215320e-01	k: 115093	n:160000
PDHX   160000 perm   38 sec   (4212 perm/sec)   p_kst 7.193312e-01   p_cons 8.193750e-03   p_joint 3.650625e-02

Joint ci ratio: 4.873727e-02	ci left: 3.576467e-02	ci right 3.755706e-02	k: 6231	n:170000
Cons ci ratio: 1.040345e-01	ci left: 7.851264e-03	ci right 8.718571e-03	k: 1407	n:170000
KS ci ratio: 5.938837e-03	ci left: 7.171809e-01	ci right 7.214587e-01	k: 122285	n:170000
PDHX   170000 perm   41 sec   (4153 perm/sec)   p_kst 7.193235e-01   p_cons 8.276471e-03   p_joint 3.665294e-02

Joint ci ratio: 5.280580e-02	ci left: 2.892057e-02	ci right 3.049462e-02	k: 5346	n:180000
Cons ci ratio: 1.016835e-01	ci left: 7.772301e-03	ci right 8.610322e-03	k: 1473	n:180000
KS ci ratio: 5.771849e-03	ci left: 7.172179e-01	ci right 7.213750e-01	k: 129474	n:180000
PDHX   180000 perm   44 sec   (4092 perm/sec)   p_kst 7.193000e-01   p_cons 8.183333e-03   p_joint 2.970000e-02

Joint ci ratio: 4.619794e-02	ci left: 3.566643e-02	ci right 3.735828e-02	k: 6936	n:190000
Cons ci ratio: 9.896793e-02	ci left: 7.783984e-03	ci right 8.599549e-03	k: 1555	n:190000
KS ci ratio: 5.620323e-03	ci left: 7.170995e-01	ci right 7.211464e-01	k: 136634	n:190000
PDHX   190000 perm   47 sec   (4036 perm/sec)   p_kst 7.191263e-01   p_cons 8.184211e-03   p_joint 3.650526e-02

Outputting figure to mutsig2_images.part000000000128/PDHX.2_1669_190000_0.71913_0.0081842_0.036505.png
                gene_name: PDHX
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.0082 
      ci_cons_bounds_left: 0.0078 
     ci_cons_bounds_right: 0.0086 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.037 

Current progress: 90 percent done.
PDIA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.281585e-02	ci left: 3.457140e-01	ci right 3.645704e-01	k: 3551	n:10000
Cons ci ratio: 9.615707e-02	ci left: 1.356056e-01	ci right 1.494034e-01	k: 1424	n:10000
KS ci ratio: 5.053201e-02	ci left: 3.660957e-01	ci right 3.851768e-01	k: 3756	n:10000
PDIA3   10000 perm   2 sec   (6585 perm/sec)   p_kst 3.756000e-01   p_cons 1.424000e-01   p_joint 3.551000e-01

Outputting figure to mutsig2_images.part000000000128/PDIA3.2_1570_10000_0.3756_0.1424_0.3551.png
                gene_name: PDIA3
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 92 percent done.
PDIK1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.418244e-02	ci left: 8.778686e-01	ci right 8.905067e-01	k: 8843	n:10000
Cons ci ratio: 2.183513e-02	ci left: 7.547419e-01	ci right 7.715046e-01	k: 7632	n:10000
KS ci ratio: 3.298561e-02	ci left: 5.756705e-01	ci right 5.950798e-01	k: 5854	n:10000
PDIK1L   10000 perm   1 sec   (6862 perm/sec)   p_kst 5.854000e-01   p_cons 7.632000e-01   p_joint 8.843000e-01

Outputting figure to mutsig2_images.part000000000128/PDIK1L.2_1034_10000_0.5854_0.7632_0.8843.png
                gene_name: PDIK1L
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 93 percent done.
PDK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.741593e-02	ci left: 3.962539e-01	ci right 4.156010e-01	k: 4059	n:10000
KS ci ratio: 2.504549e-02	ci left: 7.010970e-01	ci right 7.189804e-01	k: 7101	n:10000
PDK1   10000 perm   2 sec   (6433 perm/sec)   p_kst 7.101000e-01   p_cons 4.059000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDK1.2_1355_10000_0.7101_0.4059_1.png
                gene_name: PDK1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
PDK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.363646e-02	ci left: 8.858546e-01	ci right 8.981160e-01	k: 8921	n:10000
KS ci ratio: 5.235785e-02	ci left: 3.496895e-01	ci right 3.685926e-01	k: 3591	n:10000
PDK2   10000 perm   1 sec   (6809 perm/sec)   p_kst 3.591000e-01   p_cons 8.921000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDK2.2_1268_10000_0.3591_0.8921_1.png
                gene_name: PDK2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
PDLIM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.262005e-03	ci left: 9.426349e-01	ci right 9.515024e-01	k: 9472	n:10000
Cons ci ratio: 4.189691e-02	ci left: 4.568828e-01	ci right 4.765366e-01	k: 4667	n:10000
KS ci ratio: 3.669516e-02	ci left: 5.230630e-01	ci right 5.427178e-01	k: 5329	n:10000
PDLIM4   10000 perm   1 sec   (6779 perm/sec)   p_kst 5.329000e-01   p_cons 4.667000e-01   p_joint 9.472000e-01

Outputting figure to mutsig2_images.part000000000128/PDLIM4.2_1021_10000_0.5329_0.4667_0.9472.png
                gene_name: PDLIM4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 98 percent done.
PDPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.776290e-02	ci left: 1.316879e-01	ci right 1.453234e-01	k: 1384	n:10000
KS ci ratio: 3.536729e-02	ci left: 5.413880e-01	ci right 5.609822e-01	k: 5512	n:10000
PDPR   10000 perm   2 sec   (5882 perm/sec)   p_kst 5.512000e-01   p_cons 1.384000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000128/PDPR.2_2708_10000_0.5512_0.1384_1.png
                gene_name: PDPR
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000128
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 128 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1418>
Subject: Job 9894076: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1418>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000129> was used as the working directory.
Started at Sat Oct  6 00:24:10 2012
Results reported at Sat Oct  6 01:10:26 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000129.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000129.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 129  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000129.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3049.26 sec.
    Max Memory :      3682 MB
    Max Swap   :      6013 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
129
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 129
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 129: processing genes 11540 - 11629
Calculating significance of each gene.
Using projection method.
11540	PDSS1	5.743676e-02
11541	PDSS2	5.086171e-01
11542	PDX1	1
11543	PDXDC1	9.829405e-01
11544	PDXK	1
11545	PDXP	1
11546	PDYN	3.800256e-02
In gene PDZD11 the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 425     n = 1	mu =   2.96e-07
11547	PDZD11	8.096714e-03
11548	PDZD2	4.751456e-02
11549	PDZD3	8.535230e-01
11550	PDZD4	1
11551	PDZD7	3.186928e-01
11552	PDZD8	3.921431e-01
11553	PDZD9	1
11554	PDZK1	7.955671e-01
11555	PDZK1IP1	1
11556	PDZRN3	2.173854e-01
11557	PDZRN4	2.339678e-03
11558	PEA15	2.355576e-01
11559	PEAR1	4.821553e-01
11560	PEBP1	1
11561	PEBP4	1
11562	PECAM1	8.537736e-01
11563	PECI	7.727799e-01
11564	PECR	1
11565	PEF1	1
11566	PEG10	6.070201e-01
11567	PEG3	2.572895e-02
11568	PELI1	4.146825e-01
11569	PELI2	9.089363e-01
11570	PELI3	5.898963e-01
11571	PELO	9.268123e-01
11572	PELP1	9.716122e-01
11573	PEMT	6.330131e-01
11574	PENK	1
11575	PEPD	1
11576	PER1	9.989868e-01
11577	PER2	9.921983e-01
11578	PER3	1.591324e-01
11579	PERP	1
11580	PES1	1
11581	PET112L	2.466720e-01
11582	PEX1	8.354635e-01
11583	PEX10	1
11584	PEX11A	1.951901e-01
11585	PEX11B	4.889343e-01
11586	PEX11G	1
11587	PEX12	8.866587e-02
11588	PEX13	7.671645e-01
11589	PEX14	6.504274e-01
11590	PEX16	7.789329e-01
11591	PEX19	3.840065e-01
11592	PEX2	1
11593	PEX26	3.234308e-01
11594	PEX3	2.311901e-03
11595	PEX5	5.936458e-01
11596	PEX5L	3.461351e-01
11597	PEX6	9.897406e-01
11598	PEX7	1
11599	PF4	1
11600	PF4V1	1
11601	PFAS	9.988499e-01
11602	PFDN1	3.535821e-01
11603	PFDN2	1
11604	PFDN4	1
11605	PFDN5	4.489322e-01
11606	PFDN6	3.178843e-01
11607	PFKFB1	8.440801e-03
11608	PFKFB2	1
11609	PFKFB3	1
11610	PFKFB4	7.540423e-01
11611	PFKL	9.875465e-01
11612	PFKM	9.604169e-01
11613	PFKP	9.501991e-01
11614	PFN1	1
11615	PFN2	4.992109e-01
11616	PFN3	1
11617	PFN4	4.282235e-01
11618	PGA5	2.490062e-02
11619	PGAM1	2.443825e-01
11620	PGAM2	7.538306e-01
11621	PGAM4	1
11622	PGAM5	5.486224e-01
11623	PGAP1	1.334414e-01
11624	PGAP2	3.720818e-01
11625	PGAP3	5.021541e-02
11626	PGBD1	1.271094e-01
11627	PGBD2	7.594062e-01
11628	PGBD3	6.826630e-02
11629	PGBD4	1.547614e-01
Done

Running MutSig 2:
Scatter job 129: processing genes 11540 - 11629
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PDZD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.384084e-02	ci left: 8.828843e-01	ci right 8.952880e-01	k: 8892	n:10000
Cons ci ratio: 1.441001e-02	ci left: 8.744927e-01	ci right 8.872845e-01	k: 8810	n:10000
KS ci ratio: 2.237835e-02	ci left: 7.456379e-01	ci right 7.626138e-01	k: 7542	n:10000
PDZD2   10000 perm   4 sec   (2514 perm/sec)   p_kst 7.542000e-01   p_cons 8.810000e-01   p_joint 8.892000e-01

Outputting figure to mutsig2_images.part000000000129/PDZD2.25_8616_10000_0.7542_0.881_0.8892.png
                gene_name: PDZD2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 2 percent done.
PEG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.475817e-02	ci left: 1.686795e-01	ci right 1.837096e-01	k: 1761	n:10000
Cons ci ratio: 1.313571e-02	ci left: 8.930299e-01	ci right 9.049365e-01	k: 8991	n:10000
KS ci ratio: 1.529928e-01	ci left: 5.686952e-02	ci right 6.638783e-02	k: 615	n:10000
PEG3   10000 perm   3 sec   (3315 perm/sec)   p_kst 6.150000e-02   p_cons 8.991000e-01   p_joint 1.761000e-01

Joint ci ratio: 6.306507e-02	ci left: 1.567700e-01	ci right 1.670285e-01	k: 3237	n:20000
Cons ci ratio: 9.322776e-03	ci left: 8.941298e-01	ci right 9.025540e-01	k: 17968	n:20000
KS ci ratio: 1.072141e-01	ci left: 5.928153e-02	ci right 6.604631e-02	k: 1252	n:20000
PEG3   20000 perm   7 sec   (3053 perm/sec)   p_kst 6.260000e-02   p_cons 8.984000e-01   p_joint 1.618500e-01

Joint ci ratio: 5.099247e-02	ci left: 1.603538e-01	ci right 1.687779e-01	k: 4936	n:30000
Cons ci ratio: 7.909765e-03	ci left: 8.875880e-01	ci right 8.946694e-01	k: 26735	n:30000
KS ci ratio: 8.723155e-02	ci left: 6.030907e-02	ci right 6.584259e-02	k: 1891	n:30000
PEG3   30000 perm   10 sec   (2963 perm/sec)   p_kst 6.303333e-02   p_cons 8.911667e-01   p_joint 1.645333e-01

Outputting figure to mutsig2_images.part000000000129/PEG3.22_4801_30000_0.063033_0.89117_0.16453.png
                gene_name: PEG3
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 5 percent done.
PDZRN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
KS ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
PDZRN4   10000 perm   2 sec   (4367 perm/sec)   p_kst 9.800000e-03   p_cons 9.200000e-03   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.868611e-01	ci left: 7.923549e-03	ci right 1.062202e-02	k: 184	n:20000
KS ci ratio: 2.892375e-01	ci left: 7.784307e-03	ci right 1.046133e-02	k: 181	n:20000
PDZRN4   20000 perm   5 sec   (3951 perm/sec)   p_kst 9.050000e-03   p_cons 9.200000e-03   p_joint 0

Joint ci ratio: 2.946082e-01	ci left: 5.003063e-03	ci right 6.761370e-03	k: 175	n:30000
Cons ci ratio: 2.370412e-01	ci left: 7.962418e-03	ci right 1.013426e-02	k: 270	n:30000
KS ci ratio: 2.420484e-01	ci left: 7.617595e-03	ci right 9.745863e-03	k: 259	n:30000
PDZRN4   30000 perm   8 sec   (3780 perm/sec)   p_kst 8.633333e-03   p_cons 9.000000e-03   p_joint 5.833333e-03

Joint ci ratio: 3.573038e-01	ci left: 2.465140e-03	ci right 3.558989e-03	k: 119	n:40000
Cons ci ratio: 2.033995e-01	ci left: 8.263895e-03	ci right 1.015838e-02	k: 367	n:40000
KS ci ratio: 2.104389e-01	ci left: 7.694740e-03	ci right 9.527670e-03	k: 343	n:40000
PDZRN4   40000 perm   11 sec   (3629 perm/sec)   p_kst 8.575000e-03   p_cons 9.175000e-03   p_joint 2.975000e-03

Joint ci ratio: 3.544634e-01	ci left: 2.008446e-03	ci right 2.890909e-03	k: 121	n:50000
Cons ci ratio: 1.858398e-01	ci left: 7.999992e-03	ci right 9.657789e-03	k: 440	n:50000
KS ci ratio: 1.864808e-01	ci left: 7.942767e-03	ci right 9.595025e-03	k: 437	n:50000
PDZRN4   50000 perm   14 sec   (3514 perm/sec)   p_kst 8.740000e-03   p_cons 8.800000e-03   p_joint 2.420000e-03

Joint ci ratio: 3.207373e-01	ci left: 2.085661e-03	ci right 2.896993e-03	k: 148	n:60000
Cons ci ratio: 1.680849e-01	ci left: 8.227880e-03	ci right 9.753516e-03	k: 538	n:60000
KS ci ratio: 1.688770e-01	ci left: 8.148032e-03	ci right 9.666708e-03	k: 533	n:60000
PDZRN4   60000 perm   18 sec   (3409 perm/sec)   p_kst 8.883333e-03   p_cons 8.966667e-03   p_joint 2.466667e-03

Joint ci ratio: 3.345779e-01	ci left: 1.630307e-03	ci right 2.297774e-03	k: 136	n:70000
Cons ci ratio: 1.559715e-01	ci left: 8.244988e-03	ci right 9.653312e-03	k: 625	n:70000
KS ci ratio: 1.530384e-01	ci left: 8.574699e-03	ci right 1.000928e-02	k: 649	n:70000
PDZRN4   70000 perm   21 sec   (3327 perm/sec)   p_kst 9.271429e-03   p_cons 8.928571e-03   p_joint 1.942857e-03

Joint ci ratio: 3.701435e-01	ci left: 1.141550e-03	ci right 1.670671e-03	k: 111	n:80000
Cons ci ratio: 1.457367e-01	ci left: 8.308983e-03	ci right 9.626997e-03	k: 716	n:80000
KS ci ratio: 1.435311e-01	ci left: 8.574114e-03	ci right 9.911839e-03	k: 738	n:80000
PDZRN4   80000 perm   24 sec   (3266 perm/sec)   p_kst 9.225000e-03   p_cons 8.950000e-03   p_joint 1.387500e-03

Joint ci ratio: 3.752384e-01	ci left: 9.844840e-04	ci right 1.448628e-03	k: 108	n:90000
Cons ci ratio: 1.390308e-01	ci left: 8.146509e-03	ci right 9.374357e-03	k: 787	n:90000
KS ci ratio: 1.363505e-01	ci left: 8.479185e-03	ci right 9.730541e-03	k: 818	n:90000
PDZRN4   90000 perm   28 sec   (3208 perm/sec)   p_kst 9.088889e-03   p_cons 8.744444e-03   p_joint 1.200000e-03

Joint ci ratio: 2.082709e-01	ci left: 3.162390e-03	ci right 3.906864e-03	k: 352	n:100000
Cons ci ratio: 1.370047e-01	ci left: 7.563412e-03	ci right 8.685399e-03	k: 811	n:100000
KS ci ratio: 1.289963e-01	ci left: 8.559441e-03	ci right 9.749291e-03	k: 914	n:100000
PDZRN4   100000 perm   32 sec   (3165 perm/sec)   p_kst 9.140000e-03   p_cons 8.110000e-03   p_joint 3.520000e-03

Joint ci ratio: 2.056904e-01	ci left: 2.952444e-03	ci right 3.637794e-03	k: 361	n:110000
Cons ci ratio: 1.308655e-01	ci left: 7.561167e-03	ci right 8.628650e-03	k: 889	n:110000
KS ci ratio: 1.219279e-01	ci left: 8.741185e-03	ci right 9.884911e-03	k: 1023	n:110000
PDZRN4   110000 perm   35 sec   (3129 perm/sec)   p_kst 9.300000e-03   p_cons 8.081818e-03   p_joint 3.281818e-03

Joint ci ratio: 2.040297e-01	ci left: 2.753812e-03	ci right 3.387247e-03	k: 367	n:120000
Cons ci ratio: 1.241335e-01	ci left: 7.729809e-03	ci right 8.760835e-03	k: 988	n:120000
KS ci ratio: 1.158038e-01	ci left: 8.910305e-03	ci right 1.001360e-02	k: 1134	n:120000
PDZRN4   120000 perm   39 sec   (3098 perm/sec)   p_kst 9.450000e-03   p_cons 8.233333e-03   p_joint 3.058333e-03

Joint ci ratio: 2.007969e-01	ci left: 2.629592e-03	ci right 3.223693e-03	k: 379	n:130000
Cons ci ratio: 1.188403e-01	ci left: 7.806500e-03	ci right 8.800235e-03	k: 1078	n:130000
KS ci ratio: 1.114247e-01	ci left: 8.905005e-03	ci right 9.963204e-03	k: 1225	n:130000
PDZRN4   130000 perm   42 sec   (3064 perm/sec)   p_kst 9.423077e-03   p_cons 8.292308e-03   p_joint 2.915385e-03

Joint ci ratio: 1.977118e-01	ci left: 2.523188e-03	ci right 3.083434e-03	k: 391	n:140000
Cons ci ratio: 1.147167e-01	ci left: 7.796695e-03	ci right 8.752410e-03	k: 1157	n:140000
KS ci ratio: 1.071795e-01	ci left: 8.956760e-03	ci right 9.977997e-03	k: 1324	n:140000
PDZRN4   140000 perm   46 sec   (3027 perm/sec)   p_kst 9.457143e-03   p_cons 8.264286e-03   p_joint 2.792857e-03

Joint ci ratio: 1.947638e-01	ci left: 2.431033e-03	ci right 2.961813e-03	k: 403	n:150000
Cons ci ratio: 1.114497e-01	ci left: 7.723889e-03	ci right 8.641941e-03	k: 1226	n:150000
KS ci ratio: 1.039393e-01	ci left: 8.904845e-03	ci right 9.887592e-03	k: 1408	n:150000
PDZRN4   150000 perm   50 sec   (2989 perm/sec)   p_kst 9.386667e-03   p_cons 8.173333e-03   p_joint 2.686667e-03

Joint ci ratio: 1.950224e-01	ci left: 2.273130e-03	ci right 2.770170e-03	k: 402	n:160000
Cons ci ratio: 1.090420e-01	ci left: 7.575385e-03	ci right 8.455083e-03	k: 1281	n:160000
KS ci ratio: 1.006028e-01	ci left: 8.926861e-03	ci right 9.878543e-03	k: 1503	n:160000
PDZRN4   160000 perm   54 sec   (2952 perm/sec)   p_kst 9.393750e-03   p_cons 8.006250e-03   p_joint 2.512500e-03

Joint ci ratio: 1.947948e-01	ci left: 2.144998e-03	ci right 2.613407e-03	k: 403	n:170000
Cons ci ratio: 1.055571e-01	ci left: 7.622090e-03	ci right 8.477168e-03	k: 1367	n:170000
KS ci ratio: 9.806474e-02	ci left: 8.854896e-03	ci right 9.773719e-03	k: 1582	n:170000
PDZRN4   170000 perm   58 sec   (2917 perm/sec)   p_kst 9.305882e-03   p_cons 8.041176e-03   p_joint 2.370588e-03

Joint ci ratio: 3.670243e-01	ci left: 5.174049e-04	ci right 7.547141e-04	k: 113	n:180000
Cons ci ratio: 1.024573e-01	ci left: 7.653175e-03	ci right 8.485008e-03	k: 1451	n:180000
KS ci ratio: 9.897730e-02	ci left: 8.211100e-03	ci right 9.071504e-03	k: 1554	n:180000
PDZRN4   180000 perm   62 sec   (2881 perm/sec)   p_kst 8.633333e-03   p_cons 8.061111e-03   p_joint 6.277778e-04

Joint ci ratio: 3.753592e-01	ci left: 4.663094e-04	ci right 6.862370e-04	k: 108	n:190000
Cons ci ratio: 9.948495e-02	ci left: 7.701848e-03	ci right 8.513268e-03	k: 1539	n:190000
KS ci ratio: 9.637859e-02	ci left: 8.215377e-03	ci right 9.052350e-03	k: 1639	n:190000
PDZRN4   190000 perm   67 sec   (2848 perm/sec)   p_kst 8.626316e-03   p_cons 8.100000e-03   p_joint 5.684211e-04

Joint ci ratio: 3.703005e-01	ci left: 4.565880e-04	ci right 6.683253e-04	k: 111	n:200000
Cons ci ratio: 9.699770e-02	ci left: 7.706928e-03	ci right 8.497429e-03	k: 1619	n:200000
KS ci ratio: 9.394691e-02	ci left: 8.224376e-03	ci right 9.039962e-03	k: 1725	n:200000
PDZRN4   200000 perm   71 sec   (2817 perm/sec)   p_kst 8.625000e-03   p_cons 8.095000e-03   p_joint 5.550000e-04

Joint ci ratio: 2.210524e-01	ci left: 1.330015e-03	ci right 1.664940e-03	k: 313	n:210000
Cons ci ratio: 9.053832e-02	ci left: 8.446856e-03	ci right 9.252503e-03	k: 1857	n:210000
KS ci ratio: 9.158854e-02	ci left: 8.251373e-03	ci right 9.047993e-03	k: 1815	n:210000
PDZRN4   210000 perm   75 sec   (2785 perm/sec)   p_kst 8.642857e-03   p_cons 8.842857e-03   p_joint 1.490476e-03

Joint ci ratio: 2.239351e-01	ci left: 1.235215e-03	ci right 1.550884e-03	k: 305	n:220000
Cons ci ratio: 8.794477e-02	ci left: 8.556215e-03	ci right 9.347714e-03	k: 1968	n:220000
KS ci ratio: 8.963681e-02	ci left: 8.231703e-03	ci right 9.008600e-03	k: 1895	n:220000
PDZRN4   220000 perm   80 sec   (2753 perm/sec)   p_kst 8.613636e-03   p_cons 8.945455e-03   p_joint 1.386364e-03

Joint ci ratio: 2.182996e-01	ci left: 1.247224e-03	ci right 1.556864e-03	k: 321	n:230000
Cons ci ratio: 8.595904e-02	ci left: 8.575511e-03	ci right 9.349984e-03	k: 2060	n:230000
KS ci ratio: 8.760375e-02	ci left: 8.252187e-03	ci right 9.012448e-03	k: 1984	n:230000
PDZRN4   230000 perm   85 sec   (2721 perm/sec)   p_kst 8.626087e-03   p_cons 8.956522e-03   p_joint 1.395652e-03

Joint ci ratio: 2.149886e-01	ci left: 1.234662e-03	ci right 1.535920e-03	k: 331	n:240000
Cons ci ratio: 8.435938e-02	ci left: 8.540348e-03	ci right 9.296584e-03	k: 2139	n:240000
KS ci ratio: 8.582834e-02	ci left: 8.246678e-03	ci right 8.990262e-03	k: 2067	n:240000
PDZRN4   240000 perm   89 sec   (2690 perm/sec)   p_kst 8.612500e-03   p_cons 8.912500e-03   p_joint 1.379167e-03

Joint ci ratio: 2.105942e-01	ci left: 1.238291e-03	ci right 1.533463e-03	k: 345	n:250000
Cons ci ratio: 8.243450e-02	ci left: 8.594318e-03	ci right 9.337133e-03	k: 2240	n:250000
KS ci ratio: 8.378423e-02	ci left: 8.316170e-03	ci right 9.047289e-03	k: 2169	n:250000
PDZRN4   250000 perm   94 sec   (2660 perm/sec)   p_kst 8.676000e-03   p_cons 8.960000e-03   p_joint 1.380000e-03

Joint ci ratio: 2.082034e-01	ci left: 1.219819e-03	ci right 1.506866e-03	k: 353	n:260000
Cons ci ratio: 8.075750e-02	ci left: 8.617932e-03	ci right 9.346923e-03	k: 2334	n:260000
KS ci ratio: 8.226390e-02	ci left: 8.301385e-03	ci right 9.017325e-03	k: 2250	n:260000
PDZRN4   260000 perm   99 sec   (2625 perm/sec)   p_kst 8.653846e-03   p_cons 8.976923e-03   p_joint 1.357692e-03

Joint ci ratio: 2.053249e-01	ci left: 1.209760e-03	ci right 1.490009e-03	k: 363	n:270000
Cons ci ratio: 7.914597e-02	ci left: 8.647201e-03	ci right 9.363398e-03	k: 2430	n:270000
KS ci ratio: 8.089345e-02	ci left: 8.273288e-03	ci right 8.974358e-03	k: 2327	n:270000
PDZRN4   270000 perm   104 sec   (2596 perm/sec)   p_kst 8.618519e-03   p_cons 9.000000e-03   p_joint 1.344444e-03

Joint ci ratio: 2.106099e-01	ci left: 1.105609e-03	ci right 1.369175e-03	k: 345	n:280000
Cons ci ratio: 7.754984e-02	ci left: 8.692027e-03	ci right 9.396763e-03	k: 2531	n:280000
KS ci ratio: 7.932356e-02	ci left: 8.303308e-03	ci right 8.992635e-03	k: 2420	n:280000
PDZRN4   280000 perm   109 sec   (2566 perm/sec)   p_kst 8.642857e-03   p_cons 9.039286e-03   p_joint 1.232143e-03

Joint ci ratio: 2.094060e-01	ci left: 1.080551e-03	ci right 1.336481e-03	k: 349	n:290000
Cons ci ratio: 7.620733e-02	ci left: 8.696681e-03	ci right 9.389046e-03	k: 2621	n:290000
KS ci ratio: 7.782604e-02	ci left: 8.334761e-03	ci right 9.013044e-03	k: 2514	n:290000
PDZRN4   290000 perm   114 sec   (2536 perm/sec)   p_kst 8.668966e-03   p_cons 9.037931e-03   p_joint 1.203448e-03

Joint ci ratio: 2.079285e-01	ci left: 1.060327e-03	ci right 1.309470e-03	k: 354	n:300000
Cons ci ratio: 7.489043e-02	ci left: 8.710937e-03	ci right 9.391931e-03	k: 2714	n:300000
KS ci ratio: 7.652869e-02	ci left: 8.338070e-03	ci right 9.004807e-03	k: 2600	n:300000
PDZRN4   300000 perm   120 sec   (2503 perm/sec)   p_kst 8.666667e-03   p_cons 9.046667e-03   p_joint 1.180000e-03

Joint ci ratio: 2.070584e-01	ci left: 1.035296e-03	ci right 1.277410e-03	k: 357	n:310000
Cons ci ratio: 7.352071e-02	ci left: 8.752873e-03	ci right 9.424095e-03	k: 2816	n:310000
KS ci ratio: 7.530828e-02	ci left: 8.338088e-03	ci right 8.993728e-03	k: 2685	n:310000
PDZRN4   310000 perm   125 sec   (2476 perm/sec)   p_kst 8.661290e-03   p_cons 9.083871e-03   p_joint 1.151613e-03

Joint ci ratio: 2.103222e-01	ci left: 9.703609e-04	ci right 1.201327e-03	k: 346	n:320000
Cons ci ratio: 7.242408e-02	ci left: 8.743190e-03	ci right 9.403247e-03	k: 2902	n:320000
KS ci ratio: 7.398302e-02	ci left: 8.374995e-03	ci right 9.021450e-03	k: 2782	n:320000
PDZRN4   320000 perm   131 sec   (2448 perm/sec)   p_kst 8.693750e-03   p_cons 9.068750e-03   p_joint 1.081250e-03

Joint ci ratio: 2.094214e-01	ci left: 9.495681e-04	ci right 1.174493e-03	k: 349	n:330000
Cons ci ratio: 7.139920e-02	ci left: 8.728210e-03	ci right 9.377425e-03	k: 2986	n:330000
KS ci ratio: 7.281466e-02	ci left: 8.388931e-03	ci right 9.025802e-03	k: 2872	n:330000
PDZRN4   330000 perm   136 sec   (2418 perm/sec)   p_kst 8.703030e-03   p_cons 9.048485e-03   p_joint 1.057576e-03

Joint ci ratio: 2.112450e-01	ci left: 9.049198e-04	ci right 1.121377e-03	k: 343	n:340000
Cons ci ratio: 7.031274e-02	ci left: 8.740183e-03	ci right 9.379992e-03	k: 3079	n:340000
KS ci ratio: 7.163901e-02	ci left: 8.416567e-03	ci right 9.044790e-03	k: 2967	n:340000
PDZRN4   340000 perm   142 sec   (2393 perm/sec)   p_kst 8.726471e-03   p_cons 9.055882e-03   p_joint 1.008824e-03

Joint ci ratio: 2.088313e-01	ci left: 9.007197e-04	ci right 1.113396e-03	k: 351	n:350000
Cons ci ratio: 6.923039e-02	ci left: 8.762774e-03	ci right 9.393966e-03	k: 3176	n:350000
KS ci ratio: 7.063494e-02	ci left: 8.414630e-03	ci right 9.033545e-03	k: 3052	n:350000
PDZRN4   350000 perm   148 sec   (2369 perm/sec)   p_kst 8.720000e-03   p_cons 9.074286e-03   p_joint 1.002857e-03

Joint ci ratio: 2.045177e-01	ci left: 9.152108e-04	ci right 1.126287e-03	k: 366	n:360000
Cons ci ratio: 7.415346e-02	ci left: 7.417041e-03	ci right 7.990926e-03	k: 2772	n:360000
KS ci ratio: 6.960484e-02	ci left: 8.429238e-03	ci right 9.039820e-03	k: 3143	n:360000
PDZRN4   360000 perm   153 sec   (2347 perm/sec)   p_kst 8.730556e-03   p_cons 7.700000e-03   p_joint 1.016667e-03

Joint ci ratio: 2.109470e-01	ci left: 8.341045e-04	ci right 1.033304e-03	k: 344	n:370000
Cons ci ratio: 7.320963e-02	ci left: 7.407588e-03	ci right 7.973136e-03	k: 2844	n:370000
KS ci ratio: 6.858646e-02	ci left: 8.451088e-03	ci right 9.053940e-03	k: 3237	n:370000
PDZRN4   370000 perm   159 sec   (2324 perm/sec)   p_kst 8.748649e-03   p_cons 7.686486e-03   p_joint 9.297297e-04

Joint ci ratio: 2.106443e-01	ci left: 8.146461e-04	ci right 1.008884e-03	k: 345	n:380000
Cons ci ratio: 7.217637e-02	ci left: 7.424521e-03	ci right 7.983025e-03	k: 2926	n:380000
KS ci ratio: 6.781713e-02	ci left: 8.420102e-03	ci right 9.013741e-03	k: 3311	n:380000
PDZRN4   380000 perm   165 sec   (2302 perm/sec)   p_kst 8.713158e-03   p_cons 7.700000e-03   p_joint 9.078947e-04

Joint ci ratio: 2.183626e-01	ci left: 7.355207e-04	ci right 9.181811e-04	k: 321	n:390000
Cons ci ratio: 7.123340e-02	ci left: 7.430563e-03	ci right 7.981917e-03	k: 3004	n:390000
KS ci ratio: 6.697343e-02	ci left: 8.415956e-03	ci right 9.001635e-03	k: 3395	n:390000
PDZRN4   390000 perm   171 sec   (2281 perm/sec)   p_kst 8.705128e-03   p_cons 7.702564e-03   p_joint 8.230769e-04

Joint ci ratio: 2.297106e-01	ci left: 6.439754e-04	ci right 8.133923e-04	k: 290	n:400000
Cons ci ratio: 7.040703e-02	ci left: 7.419154e-03	ci right 7.963014e-03	k: 3075	n:400000
KS ci ratio: 6.603614e-02	ci left: 8.444029e-03	ci right 9.023122e-03	k: 3492	n:400000
PDZRN4   400000 perm   177 sec   (2261 perm/sec)   p_kst 8.730000e-03   p_cons 7.687500e-03   p_joint 7.250000e-04

Joint ci ratio: 2.269967e-01	ci left: 6.443652e-04	ci right 8.116016e-04	k: 297	n:410000
Cons ci ratio: 6.956424e-02	ci left: 7.417924e-03	ci right 7.954922e-03	k: 3150	n:410000
KS ci ratio: 6.523803e-02	ci left: 8.444390e-03	ci right 9.016244e-03	k: 3578	n:410000
PDZRN4   410000 perm   183 sec   (2239 perm/sec)   p_kst 8.726829e-03   p_cons 7.682927e-03   p_joint 7.243902e-04

Joint ci ratio: 2.243768e-01	ci left: 6.447477e-04	ci right 8.098851e-04	k: 304	n:420000
Cons ci ratio: 6.862250e-02	ci left: 7.444875e-03	ci right 7.976237e-03	k: 3237	n:420000
KS ci ratio: 6.426506e-02	ci left: 8.498662e-03	ci right 9.065289e-03	k: 3687	n:420000
PDZRN4   420000 perm   189 sec   (2218 perm/sec)   p_kst 8.778571e-03   p_cons 7.707143e-03   p_joint 7.238095e-04

Joint ci ratio: 2.258657e-01	ci left: 6.209749e-04	ci right 7.812258e-04	k: 300	n:430000
Cons ci ratio: 6.803837e-02	ci left: 7.399739e-03	ci right 7.923207e-03	k: 3293	n:430000
KS ci ratio: 6.345247e-02	ci left: 8.518424e-03	ci right 9.078923e-03	k: 3782	n:430000
PDZRN4   430000 perm   196 sec   (2198 perm/sec)   p_kst 8.795349e-03   p_cons 7.658140e-03   p_joint 6.976744e-04

Joint ci ratio: 2.240133e-01	ci left: 6.175851e-04	ci right 7.754737e-04	k: 305	n:440000
Cons ci ratio: 6.715649e-02	ci left: 7.425952e-03	ci right 7.944199e-03	k: 3380	n:440000
KS ci ratio: 6.268626e-02	ci left: 8.532856e-03	ci right 9.087278e-03	k: 3875	n:440000
PDZRN4   440000 perm   202 sec   (2178 perm/sec)   p_kst 8.806818e-03   p_cons 7.681818e-03   p_joint 6.931818e-04

Joint ci ratio: 2.207894e-01	ci left: 6.227471e-04	ci right 7.793530e-04	k: 314	n:450000
Cons ci ratio: 6.647241e-02	ci left: 7.413886e-03	ci right 7.925817e-03	k: 3450	n:450000
KS ci ratio: 6.193928e-02	ci left: 8.548873e-03	ci right 9.097480e-03	k: 3969	n:450000
PDZRN4   450000 perm   208 sec   (2159 perm/sec)   p_kst 8.820000e-03   p_cons 7.666667e-03   p_joint 6.977778e-04

Joint ci ratio: 2.190582e-01	ci left: 6.194798e-04	ci right 7.738781e-04	k: 319	n:460000
Cons ci ratio: 6.563995e-02	ci left: 7.440862e-03	ci right 7.947977e-03	k: 3538	n:460000
KS ci ratio: 6.114252e-02	ci left: 8.585640e-03	ci right 9.129269e-03	k: 4073	n:460000
PDZRN4   460000 perm   215 sec   (2138 perm/sec)   p_kst 8.854348e-03   p_cons 7.691304e-03   p_joint 6.934783e-04

Joint ci ratio: 2.170332e-01	ci left: 6.183682e-04	ci right 7.708747e-04	k: 325	n:470000
Cons ci ratio: 6.497354e-02	ci left: 7.435328e-03	ci right 7.936727e-03	k: 3611	n:470000
KS ci ratio: 6.047073e-02	ci left: 8.593641e-03	ci right 9.131588e-03	k: 4164	n:470000
PDZRN4   470000 perm   222 sec   (2115 perm/sec)   p_kst 8.859574e-03   p_cons 7.682979e-03   p_joint 6.914894e-04

Joint ci ratio: 2.236544e-01	ci left: 5.680845e-04	ci right 7.130532e-04	k: 306	n:480000
Cons ci ratio: 6.428308e-02	ci left: 7.440300e-03	ci right 7.936504e-03	k: 3689	n:480000
KS ci ratio: 5.982061e-02	ci left: 8.601340e-03	ci right 9.133780e-03	k: 4255	n:480000
PDZRN4   480000 perm   229 sec   (2097 perm/sec)   p_kst 8.864583e-03   p_cons 7.685417e-03   p_joint 6.375000e-04

Joint ci ratio: 2.207957e-01	ci left: 5.719089e-04	ci right 7.157347e-04	k: 314	n:490000
Cons ci ratio: 6.354623e-02	ci left: 7.461164e-03	ci right 7.952847e-03	k: 3775	n:490000
KS ci ratio: 5.920476e-02	ci left: 8.604733e-03	ci right 9.131711e-03	k: 4344	n:490000
PDZRN4   490000 perm   236 sec   (2080 perm/sec)   p_kst 8.865306e-03   p_cons 7.704082e-03   p_joint 6.408163e-04

Joint ci ratio: 2.194076e-01	ci left: 5.680296e-04	ci right 7.098606e-04	k: 318	n:500000
Cons ci ratio: 6.288340e-02	ci left: 7.469413e-03	ci right 7.956318e-03	k: 3855	n:500000
KS ci ratio: 5.870112e-02	ci left: 8.580424e-03	ci right 9.101292e-03	k: 4419	n:500000
PDZRN4   500000 perm   243 sec   (2061 perm/sec)   p_kst 8.838000e-03   p_cons 7.710000e-03   p_joint 6.360000e-04

Joint ci ratio: 2.170391e-01	ci left: 5.698671e-04	ci right 7.104161e-04	k: 325	n:510000
Cons ci ratio: 6.235273e-02	ci left: 7.450337e-03	ci right 7.931752e-03	k: 3921	n:510000
KS ci ratio: 5.824280e-02	ci left: 8.547424e-03	ci right 9.062101e-03	k: 4489	n:510000
PDZRN4   510000 perm   250 sec   (2044 perm/sec)   p_kst 8.801961e-03   p_cons 7.688235e-03   p_joint 6.372549e-04

Joint ci ratio: 2.153939e-01	ci left: 5.680028e-04	ci right 7.068897e-04	k: 330	n:520000
Cons ci ratio: 6.179625e-02	ci left: 7.441479e-03	ci right 7.917877e-03	k: 3992	n:520000
KS ci ratio: 5.778226e-02	ci left: 8.519500e-03	ci right 9.028304e-03	k: 4561	n:520000
PDZRN4   520000 perm   257 sec   (2027 perm/sec)   p_kst 8.771154e-03   p_cons 7.676923e-03   p_joint 6.346154e-04

Joint ci ratio: 2.150704e-01	ci left: 5.590706e-04	ci right 6.955409e-04	k: 331	n:530000
Cons ci ratio: 6.120131e-02	ci left: 7.445981e-03	ci right 7.917915e-03	k: 4070	n:530000
KS ci ratio: 5.706598e-02	ci left: 8.572627e-03	ci right 9.078048e-03	k: 4676	n:530000
PDZRN4   530000 perm   264 sec   (2010 perm/sec)   p_kst 8.822642e-03   p_cons 7.679245e-03   p_joint 6.245283e-04

Joint ci ratio: 2.125247e-01	ci left: 5.627391e-04	ci right 6.982672e-04	k: 339	n:540000
Cons ci ratio: 6.066008e-02	ci left: 7.441218e-03	ci right 7.908532e-03	k: 4143	n:540000
KS ci ratio: 5.659653e-02	ci left: 8.556264e-03	ci right 9.056435e-03	k: 4754	n:540000
PDZRN4   540000 perm   271 sec   (1993 perm/sec)   p_kst 8.803704e-03   p_cons 7.672222e-03   p_joint 6.277778e-04

Joint ci ratio: 2.097660e-01	ci left: 5.680061e-04	ci right 7.027988e-04	k: 348	n:550000
Cons ci ratio: 6.011859e-02	ci left: 7.440227e-03	ci right 7.903163e-03	k: 4218	n:550000
KS ci ratio: 5.619130e-02	ci left: 8.524377e-03	ci right 9.019000e-03	k: 4823	n:550000
PDZRN4   550000 perm   278 sec   (1976 perm/sec)   p_kst 8.769091e-03   p_cons 7.669091e-03   p_joint 6.327273e-04

Joint ci ratio: 2.082796e-01	ci left: 5.663243e-04	ci right 6.996442e-04	k: 353	n:560000
Cons ci ratio: 5.963335e-02	ci left: 7.428734e-03	ci right 7.887096e-03	k: 4287	n:560000
KS ci ratio: 5.572001e-02	ci left: 8.516535e-03	ci right 9.006425e-03	k: 4905	n:560000
PDZRN4   560000 perm   286 sec   (1961 perm/sec)   p_kst 8.758929e-03   p_cons 7.655357e-03   p_joint 6.303571e-04

Joint ci ratio: 2.085757e-01	ci left: 5.547256e-04	ci right 6.855244e-04	k: 352	n:570000
Cons ci ratio: 5.907092e-02	ci left: 7.440131e-03	ci right 7.894719e-03	k: 4369	n:570000
KS ci ratio: 5.528834e-02	ci left: 8.500333e-03	ci right 8.985382e-03	k: 4982	n:570000
PDZRN4   570000 perm   293 sec   (1945 perm/sec)   p_kst 8.740351e-03   p_cons 7.664912e-03   p_joint 6.175439e-04

Joint ci ratio: 2.076956e-01	ci left: 5.500641e-04	ci right 6.791468e-04	k: 355	n:580000
Cons ci ratio: 5.856390e-02	ci left: 7.440961e-03	ci right 7.891564e-03	k: 4445	n:580000
KS ci ratio: 5.483377e-02	ci left: 8.494908e-03	ci right 8.975536e-03	k: 5065	n:580000
PDZRN4   580000 perm   301 sec   (1930 perm/sec)   p_kst 8.732759e-03   p_cons 7.663793e-03   p_joint 6.120690e-04

Joint ci ratio: 2.085779e-01	ci left: 5.359208e-04	ci right 6.622870e-04	k: 352	n:590000
Cons ci ratio: 5.808914e-02	ci left: 7.436766e-03	ci right 7.883343e-03	k: 4518	n:590000
KS ci ratio: 5.441689e-02	ci left: 8.481323e-03	ci right 8.957419e-03	k: 5143	n:590000
PDZRN4   590000 perm   308 sec   (1914 perm/sec)   p_kst 8.716949e-03   p_cons 7.657627e-03   p_joint 5.966102e-04

Joint ci ratio: 2.074065e-01	ci left: 5.333081e-04	ci right 6.582624e-04	k: 356	n:600000
Cons ci ratio: 5.755631e-02	ci left: 7.450798e-03	ci right 7.893976e-03	k: 4602	n:600000
KS ci ratio: 5.394688e-02	ci left: 8.487936e-03	ci right 8.960159e-03	k: 5233	n:600000
PDZRN4   600000 perm   316 sec   (1899 perm/sec)   p_kst 8.721667e-03   p_cons 7.670000e-03   p_joint 5.933333e-04

Joint ci ratio: 2.068286e-01	ci left: 5.276739e-04	ci right 6.509200e-04	k: 358	n:610000
Cons ci ratio: 5.706856e-02	ci left: 7.456306e-03	ci right 7.895930e-03	k: 4681	n:610000
KS ci ratio: 5.355992e-02	ci left: 8.471703e-03	ci right 8.939538e-03	k: 5309	n:610000
PDZRN4   610000 perm   324 sec   (1885 perm/sec)   p_kst 8.703279e-03   p_cons 7.673770e-03   p_joint 5.868852e-04

Joint ci ratio: 2.054033e-01	ci left: 5.268113e-04	ci right 6.489015e-04	k: 363	n:620000
Cons ci ratio: 5.658102e-02	ci left: 7.464833e-03	ci right 7.901077e-03	k: 4762	n:620000
KS ci ratio: 5.318117e-02	ci left: 8.456006e-03	ci right 8.919571e-03	k: 5385	n:620000
PDZRN4   620000 perm   332 sec   (1870 perm/sec)   p_kst 8.685484e-03   p_cons 7.680645e-03   p_joint 5.854839e-04

Joint ci ratio: 2.042843e-01	ci left: 5.244726e-04	ci right 6.452760e-04	k: 367	n:630000
Cons ci ratio: 5.626401e-02	ci left: 7.430845e-03	ci right 7.862590e-03	k: 4816	n:630000
KS ci ratio: 5.277138e-02	ci left: 8.453350e-03	ci right 8.913090e-03	k: 5469	n:630000
PDZRN4   630000 perm   340 sec   (1852 perm/sec)   p_kst 8.680952e-03   p_cons 7.644444e-03   p_joint 5.825397e-04

Joint ci ratio: 2.031833e-01	ci left: 5.222089e-04	ci right 6.417621e-04	k: 371	n:640000
Cons ci ratio: 5.581962e-02	ci left: 7.433365e-03	ci right 7.861735e-03	k: 4893	n:640000
KS ci ratio: 5.230445e-02	ci left: 8.472382e-03	ci right 8.928957e-03	k: 5567	n:640000
PDZRN4   640000 perm   348 sec   (1837 perm/sec)   p_kst 8.698437e-03   p_cons 7.645313e-03   p_joint 5.796875e-04

Joint ci ratio: 2.031842e-01	ci left: 5.141747e-04	ci right 6.318891e-04	k: 371	n:650000
Cons ci ratio: 5.541368e-02	ci left: 7.428233e-03	ci right 7.853095e-03	k: 4965	n:650000
KS ci ratio: 5.191445e-02	ci left: 8.469584e-03	ci right 8.922503e-03	k: 5651	n:650000
PDZRN4   650000 perm   357 sec   (1822 perm/sec)   p_kst 8.693846e-03   p_cons 7.638462e-03   p_joint 5.707692e-04

Joint ci ratio: 2.031851e-01	ci left: 5.063839e-04	ci right 6.223153e-04	k: 371	n:660000
Cons ci ratio: 5.496153e-02	ci left: 7.438213e-03	ci right 7.860065e-03	k: 5047	n:660000
KS ci ratio: 5.152850e-02	ci left: 8.468379e-03	ci right 8.917767e-03	k: 5736	n:660000
PDZRN4   660000 perm   365 sec   (1807 perm/sec)   p_kst 8.690909e-03   p_cons 7.646970e-03   p_joint 5.621212e-04

Joint ci ratio: 2.119151e-01	ci left: 4.563746e-04	ci right 5.659298e-04	k: 341	n:670000
Cons ci ratio: 5.447749e-02	ci left: 7.459688e-03	ci right 7.878914e-03	k: 5137	n:670000
KS ci ratio: 5.118209e-02	ci left: 8.456907e-03	ci right 8.902580e-03	k: 5814	n:670000
PDZRN4   670000 perm   374 sec   (1793 perm/sec)   p_kst 8.677612e-03   p_cons 7.667164e-03   p_joint 5.089552e-04

Joint ci ratio: 2.112986e-01	ci left: 4.524485e-04	ci right 5.607042e-04	k: 343	n:680000
Cons ci ratio: 5.400600e-02	ci left: 7.480547e-03	ci right 7.897193e-03	k: 5227	n:680000
KS ci ratio: 5.076875e-02	ci left: 8.470468e-03	ci right 8.913145e-03	k: 5909	n:680000
PDZRN4   680000 perm   382 sec   (1778 perm/sec)   p_kst 8.689706e-03   p_cons 7.686765e-03   p_joint 5.044118e-04

Joint ci ratio: 2.097796e-01	ci left: 4.527556e-04	ci right 5.602060e-04	k: 348	n:690000
Cons ci ratio: 5.361263e-02	ci left: 7.482226e-03	ci right 7.895837e-03	k: 5304	n:690000
KS ci ratio: 5.040339e-02	ci left: 8.470769e-03	ci right 8.910183e-03	k: 5995	n:690000
PDZRN4   690000 perm   391 sec   (1765 perm/sec)   p_kst 8.688406e-03   p_cons 7.686957e-03   p_joint 5.043478e-04

Joint ci ratio: 1.512573e-01	ci left: 8.860613e-04	ci right 1.032405e-03	k: 670	n:700000
Cons ci ratio: 5.323271e-02	ci left: 7.482458e-03	ci right 7.893060e-03	k: 5380	n:700000
KS ci ratio: 4.994648e-02	ci left: 8.504933e-03	ci right 8.942005e-03	k: 6105	n:700000
PDZRN4   700000 perm   400 sec   (1752 perm/sec)   p_kst 8.721429e-03   p_cons 7.685714e-03   p_joint 9.571429e-04

Joint ci ratio: 1.515979e-01	ci left: 8.695157e-04	ci right 1.013479e-03	k: 667	n:710000
Cons ci ratio: 5.280715e-02	ci left: 7.497984e-03	ci right 7.906048e-03	k: 5467	n:710000
KS ci ratio: 4.955811e-02	ci left: 8.518676e-03	ci right 8.952953e-03	k: 6201	n:710000
PDZRN4   710000 perm   408 sec   (1738 perm/sec)   p_kst 8.733803e-03   p_cons 7.700000e-03   p_joint 9.394366e-04

Joint ci ratio: 1.506983e-01	ci left: 8.681300e-04	ci right 1.010934e-03	k: 675	n:720000
Cons ci ratio: 5.238688e-02	ci left: 7.514461e-03	ci right 7.920070e-03	k: 5555	n:720000
KS ci ratio: 4.924575e-02	ci left: 8.508726e-03	ci right 8.939685e-03	k: 6280	n:720000
PDZRN4   720000 perm   417 sec   (1725 perm/sec)   p_kst 8.722222e-03   p_cons 7.715278e-03   p_joint 9.375000e-04

Joint ci ratio: 1.500343e-01	ci left: 8.641476e-04	ci right 1.005614e-03	k: 681	n:730000
Cons ci ratio: 5.202295e-02	ci left: 7.516978e-03	ci right 7.919820e-03	k: 5633	n:730000
KS ci ratio: 4.891208e-02	ci left: 8.508531e-03	ci right 8.936477e-03	k: 6366	n:730000
PDZRN4   730000 perm   426 sec   (1712 perm/sec)   p_kst 8.720548e-03   p_cons 7.716438e-03   p_joint 9.328767e-04

Joint ci ratio: 1.488386e-01	ci left: 8.667790e-04	ci right 1.007445e-03	k: 692	n:740000
Cons ci ratio: 5.168018e-02	ci left: 7.515435e-03	ci right 7.915460e-03	k: 5708	n:740000
KS ci ratio: 4.856991e-02	ci left: 8.513691e-03	ci right 8.938817e-03	k: 6456	n:740000
PDZRN4   740000 perm   435 sec   (1700 perm/sec)   p_kst 8.724324e-03   p_cons 7.713514e-03   p_joint 9.351351e-04

Joint ci ratio: 1.478815e-01	ci left: 8.667765e-04	ci right 1.006458e-03	k: 701	n:750000
Cons ci ratio: 5.132175e-02	ci left: 7.520523e-03	ci right 7.917961e-03	k: 5788	n:750000
KS ci ratio: 4.823483e-02	ci left: 8.518723e-03	ci right 8.941084e-03	k: 6546	n:750000
PDZRN4   750000 perm   445 sec   (1687 perm/sec)   p_kst 8.728000e-03   p_cons 7.717333e-03   p_joint 9.346667e-04

Joint ci ratio: 1.485191e-01	ci left: 8.477690e-04	ci right 9.850283e-04	k: 695	n:760000
Cons ci ratio: 5.101449e-02	ci left: 7.512494e-03	ci right 7.907061e-03	k: 5858	n:760000
KS ci ratio: 4.794669e-02	ci left: 8.509331e-03	ci right 8.928637e-03	k: 6625	n:760000
PDZRN4   760000 perm   454 sec   (1675 perm/sec)   p_kst 8.717105e-03   p_cons 7.707895e-03   p_joint 9.144737e-04

Joint ci ratio: 1.477780e-01	ci left: 8.455128e-04	ci right 9.816635e-04	k: 702	n:770000
Cons ci ratio: 5.068254e-02	ci left: 7.513658e-03	ci right 7.905643e-03	k: 5935	n:770000
KS ci ratio: 4.758496e-02	ci left: 8.528425e-03	ci right 8.945414e-03	k: 6726	n:770000
PDZRN4   770000 perm   463 sec   (1663 perm/sec)   p_kst 8.735065e-03   p_cons 7.707792e-03   p_joint 9.116883e-04

Joint ci ratio: 1.593087e-01	ci left: 7.138483e-04	ci right 8.386253e-04	k: 604	n:780000
Cons ci ratio: 5.036121e-02	ci left: 7.513534e-03	ci right 7.902956e-03	k: 6011	n:780000
KS ci ratio: 4.728721e-02	ci left: 8.526767e-03	ci right 8.940996e-03	k: 6811	n:780000
PDZRN4   780000 perm   472 sec   (1651 perm/sec)   p_kst 8.732051e-03   p_cons 7.706410e-03   p_joint 7.743590e-04

Joint ci ratio: 1.589157e-01	ci left: 7.084583e-04	ci right 8.319586e-04	k: 607	n:790000
Cons ci ratio: 5.011647e-02	ci left: 7.492170e-03	ci right 7.878542e-03	k: 6070	n:790000
KS ci ratio: 4.702940e-02	ci left: 8.512649e-03	ci right 8.923876e-03	k: 6886	n:790000
PDZRN4   790000 perm   482 sec   (1638 perm/sec)   p_kst 8.716456e-03   p_cons 7.683544e-03   p_joint 7.683544e-04

Joint ci ratio: 1.583959e-01	ci left: 7.044040e-04	ci right 8.267576e-04	k: 611	n:800000
Cons ci ratio: 4.980164e-02	ci left: 7.493565e-03	ci right 7.877512e-03	k: 6147	n:800000
KS ci ratio: 4.674190e-02	ci left: 8.511246e-03	ci right 8.919824e-03	k: 6971	n:800000
PDZRN4   800000 perm   492 sec   (1627 perm/sec)   p_kst 8.713750e-03   p_cons 7.683750e-03   p_joint 7.637500e-04

Joint ci ratio: 1.573706e-01	ci left: 7.051940e-04	ci right 8.268171e-04	k: 619	n:810000
Cons ci ratio: 4.949267e-02	ci left: 7.494934e-03	ci right 7.876501e-03	k: 6224	n:810000
KS ci ratio: 4.644634e-02	ci left: 8.514765e-03	ci right 8.920859e-03	k: 7060	n:810000
PDZRN4   810000 perm   501 sec   (1616 perm/sec)   p_kst 8.716049e-03   p_cons 7.683951e-03   p_joint 7.641975e-04

Joint ci ratio: 1.562406e-01	ci left: 7.071391e-04	ci right 8.281398e-04	k: 628	n:820000
Cons ci ratio: 4.919331e-02	ci left: 7.495072e-03	ci right 7.874272e-03	k: 6300	n:820000
KS ci ratio: 4.620196e-02	ci left: 8.501329e-03	ci right 8.904592e-03	k: 7135	n:820000
PDZRN4   820000 perm   511 sec   (1605 perm/sec)   p_kst 8.701220e-03   p_cons 7.682927e-03   p_joint 7.658537e-04

Joint ci ratio: 1.557465e-01	ci left: 7.032504e-04	ci right 8.231697e-04	k: 632	n:830000
Cons ci ratio: 4.789166e-02	ci left: 7.815418e-03	ci right 8.200076e-03	k: 6645	n:830000
KS ci ratio: 4.591966e-02	ci left: 8.503707e-03	ci right 8.904552e-03	k: 7223	n:830000
PDZRN4   830000 perm   521 sec   (1593 perm/sec)   p_kst 8.702410e-03   p_cons 8.006024e-03   p_joint 7.614458e-04

Joint ci ratio: 1.553792e-01	ci left: 6.983106e-04	ci right 8.170805e-04	k: 635	n:840000
Cons ci ratio: 4.761670e-02	ci left: 7.812949e-03	ci right 8.195217e-03	k: 6722	n:840000
KS ci ratio: 4.564878e-02	ci left: 8.503681e-03	ci right 8.902099e-03	k: 7309	n:840000
PDZRN4   840000 perm   531 sec   (1583 perm/sec)   p_kst 8.701190e-03   p_cons 8.002381e-03   p_joint 7.559524e-04

Joint ci ratio: 1.544110e-01	ci left: 6.991422e-04	ci right 8.172441e-04	k: 643	n:850000
Cons ci ratio: 4.728338e-02	ci left: 7.831473e-03	ci right 8.211891e-03	k: 6817	n:850000
KS ci ratio: 4.537026e-02	ci left: 8.508316e-03	ci right 8.904455e-03	k: 7399	n:850000
PDZRN4   850000 perm   541 sec   (1572 perm/sec)   p_kst 8.704706e-03   p_cons 8.020000e-03   p_joint 7.564706e-04

Joint ci ratio: 1.306709e-01	ci left: 9.770314e-04	ci right 1.114737e-03	k: 898	n:860000
Cons ci ratio: 4.697752e-02	ci left: 7.842679e-03	ci right 8.221111e-03	k: 6906	n:860000
KS ci ratio: 4.513021e-02	ci left: 8.500202e-03	ci right 8.893815e-03	k: 7478	n:860000
PDZRN4   860000 perm   551 sec   (1561 perm/sec)   p_kst 8.695349e-03   p_cons 8.030233e-03   p_joint 1.044186e-03

Joint ci ratio: 1.299502e-01	ci left: 9.769207e-04	ci right 1.113793e-03	k: 908	n:870000
Cons ci ratio: 4.670444e-02	ci left: 7.844546e-03	ci right 8.220809e-03	k: 6987	n:870000
KS ci ratio: 4.486401e-02	ci left: 8.503647e-03	ci right 8.895037e-03	k: 7567	n:870000
PDZRN4   870000 perm   561 sec   (1550 perm/sec)   p_kst 8.697701e-03   p_cons 8.031034e-03   p_joint 1.043678e-03

Joint ci ratio: 1.293117e-01	ci left: 9.757149e-04	ci right 1.111695e-03	k: 917	n:880000
Cons ci ratio: 4.644269e-02	ci left: 7.844131e-03	ci right 8.218209e-03	k: 7066	n:880000
KS ci ratio: 4.459071e-02	ci left: 8.511515e-03	ci right 8.900820e-03	k: 7660	n:880000
PDZRN4   880000 perm   571 sec   (1540 perm/sec)   p_kst 8.704545e-03   p_cons 8.029545e-03   p_joint 1.042045e-03

Joint ci ratio: 1.281989e-01	ci left: 9.821505e-04	ci right 1.117760e-03	k: 933	n:890000
Cons ci ratio: 4.611055e-02	ci left: 7.869278e-03	ci right 8.241800e-03	k: 7168	n:890000
KS ci ratio: 4.432812e-02	ci left: 8.516991e-03	ci right 8.904194e-03	k: 7751	n:890000
PDZRN4   890000 perm   582 sec   (1530 perm/sec)   p_kst 8.708989e-03   p_cons 8.053933e-03   p_joint 1.048315e-03

Joint ci ratio: 1.291022e-01	ci left: 9.572574e-04	ci right 1.090432e-03	k: 920	n:900000
Cons ci ratio: 4.587776e-02	ci left: 7.862019e-03	ci right 8.232269e-03	k: 7241	n:900000
KS ci ratio: 4.410700e-02	ci left: 8.508066e-03	ci right 8.892884e-03	k: 7829	n:900000
PDZRN4   900000 perm   592 sec   (1520 perm/sec)   p_kst 8.698889e-03   p_cons 8.045556e-03   p_joint 1.022222e-03

Joint ci ratio: 1.351099e-01	ci left: 8.617269e-04	ci right 9.876385e-04	k: 840	n:910000
Cons ci ratio: 4.562959e-02	ci left: 7.861443e-03	ci right 8.229611e-03	k: 7320	n:910000
KS ci ratio: 4.393120e-02	ci left: 8.483037e-03	ci right 8.865155e-03	k: 7892	n:910000
PDZRN4   910000 perm   603 sec   (1510 perm/sec)   p_kst 8.672527e-03   p_cons 8.043956e-03   p_joint 9.230769e-04

Joint ci ratio: 1.347103e-01	ci left: 8.576115e-04	ci right 9.825216e-04	k: 845	n:920000
Cons ci ratio: 4.539160e-02	ci left: 7.858736e-03	ci right 8.224807e-03	k: 7397	n:920000
KS ci ratio: 4.371041e-02	ci left: 8.476833e-03	ci right 8.856705e-03	k: 7972	n:920000
PDZRN4   920000 perm   613 sec   (1500 perm/sec)   p_kst 8.665217e-03   p_cons 8.040217e-03   p_joint 9.184783e-04

Joint ci ratio: 1.340780e-01	ci left: 8.567028e-04	ci right 9.808481e-04	k: 853	n:930000
Cons ci ratio: 4.513295e-02	ci left: 7.864597e-03	ci right 8.228799e-03	k: 7482	n:930000
KS ci ratio: 4.347658e-02	ci left: 8.477150e-03	ci right 8.854952e-03	k: 8058	n:930000
PDZRN4   930000 perm   625 sec   (1489 perm/sec)   p_kst 8.664516e-03   p_cons 8.045161e-03   p_joint 9.172043e-04

Joint ci ratio: 1.339218e-01	ci left: 8.496451e-04	ci right 9.726127e-04	k: 855	n:940000
Cons ci ratio: 4.488764e-02	ci left: 7.867184e-03	ci right 8.229475e-03	k: 7564	n:940000
KS ci ratio: 4.323575e-02	ci left: 8.481674e-03	ci right 8.857533e-03	k: 8148	n:940000
PDZRN4   940000 perm   635 sec   (1480 perm/sec)   p_kst 8.668085e-03   p_cons 8.046809e-03   p_joint 9.095745e-04

Joint ci ratio: 1.332232e-01	ci left: 8.498586e-04	ci right 9.721648e-04	k: 864	n:950000
Cons ci ratio: 4.461395e-02	ci left: 7.881172e-03	ci right 8.241837e-03	k: 7657	n:950000
KS ci ratio: 4.299625e-02	ci left: 8.487151e-03	ci right 8.861117e-03	k: 8239	n:950000
PDZRN4   950000 perm   646 sec   (1471 perm/sec)   p_kst 8.672632e-03   p_cons 8.060000e-03   p_joint 9.094737e-04

Joint ci ratio: 1.326115e-01	ci left: 8.490621e-04	ci right 9.706484e-04	k: 872	n:960000
Cons ci ratio: 4.440878e-02	ci left: 7.872211e-03	ci right 8.230767e-03	k: 7728	n:960000
KS ci ratio: 4.279438e-02	ci left: 8.479121e-03	ci right 8.850936e-03	k: 8317	n:960000
PDZRN4   960000 perm   657 sec   (1462 perm/sec)   p_kst 8.663542e-03   p_cons 8.050000e-03   p_joint 9.083333e-04

Joint ci ratio: 1.332245e-01	ci left: 8.323352e-04	ci right 9.521207e-04	k: 864	n:970000
Cons ci ratio: 4.419500e-02	ci left: 7.867517e-03	ci right 8.224090e-03	k: 7803	n:970000
KS ci ratio: 4.257231e-02	ci left: 8.480441e-03	ci right 8.850337e-03	k: 8404	n:970000
PDZRN4   970000 perm   668 sec   (1453 perm/sec)   p_kst 8.663918e-03   p_cons 8.044330e-03   p_joint 8.907216e-04

Joint ci ratio: 1.333022e-01	ci left: 8.228553e-04	ci right 9.413512e-04	k: 863	n:980000
Cons ci ratio: 4.396178e-02	ci left: 7.870997e-03	ci right 8.225798e-03	k: 7886	n:980000
KS ci ratio: 4.235618e-02	ci left: 8.480729e-03	ci right 8.848714e-03	k: 8490	n:980000
PDZRN4   980000 perm   679 sec   (1444 perm/sec)   p_kst 8.663265e-03   p_cons 8.046939e-03   p_joint 8.806122e-04

Joint ci ratio: 1.329185e-01	ci left: 8.194259e-04	ci right 9.370613e-04	k: 868	n:990000
Cons ci ratio: 4.373221e-02	ci left: 7.874411e-03	ci right 8.227466e-03	k: 7969	n:990000
KS ci ratio: 4.218302e-02	ci left: 8.465024e-03	ci right 8.830789e-03	k: 8560	n:990000
PDZRN4   990000 perm   690 sec   (1434 perm/sec)   p_kst 8.646465e-03   p_cons 8.049495e-03   p_joint 8.767677e-04

Joint ci ratio: 1.326139e-01	ci left: 8.150987e-04	ci right 9.318236e-04	k: 872	n:1000000
Cons ci ratio: 4.350893e-02	ci left: 7.876773e-03	ci right 8.228086e-03	k: 8051	n:1000000
KS ci ratio: 4.201687e-02	ci left: 8.447656e-03	ci right 8.811199e-03	k: 8628	n:1000000
PDZRN4   1000000 perm   702 sec   (1425 perm/sec)   p_kst 8.628000e-03   p_cons 8.051000e-03   p_joint 8.720000e-04

Joint ci ratio: 1.319356e-01	ci left: 8.156444e-04	ci right 9.318032e-04	k: 881	n:1010000
Cons ci ratio: 4.328367e-02	ci left: 7.881051e-03	ci right 8.230690e-03	k: 8135	n:1010000
KS ci ratio: 4.180180e-02	ci left: 8.451212e-03	ci right 8.813001e-03	k: 8717	n:1010000
PDZRN4   1010000 perm   713 sec   (1416 perm/sec)   p_kst 8.630693e-03   p_cons 8.054455e-03   p_joint 8.722772e-04

Joint ci ratio: 1.315634e-01	ci left: 8.123882e-04	ci right 9.277314e-04	k: 886	n:1020000
Cons ci ratio: 4.306715e-02	ci left: 7.883311e-03	ci right 8.231256e-03	k: 8217	n:1020000
KS ci ratio: 4.159714e-02	ci left: 8.451791e-03	ci right 8.811792e-03	k: 8803	n:1020000
PDZRN4   1020000 perm   725 sec   (1408 perm/sec)   p_kst 8.630392e-03   p_cons 8.055882e-03   p_joint 8.686275e-04

Joint ci ratio: 1.310474e-01	ci left: 8.110738e-04	ci right 9.257436e-04	k: 893	n:1030000
Cons ci ratio: 4.286687e-02	ci left: 7.880728e-03	ci right 8.226902e-03	k: 8294	n:1030000
KS ci ratio: 4.143543e-02	ci left: 8.436029e-03	ci right 8.793927e-03	k: 8872	n:1030000
PDZRN4   1030000 perm   736 sec   (1399 perm/sec)   p_kst 8.613592e-03   p_cons 8.052427e-03   p_joint 8.669903e-04

Joint ci ratio: 1.301046e-01	ci left: 8.153668e-04	ci right 9.297502e-04	k: 906	n:1040000
Cons ci ratio: 4.267964e-02	ci left: 7.874392e-03	ci right 8.218741e-03	k: 8367	n:1040000
KS ci ratio: 4.122448e-02	ci left: 8.441509e-03	ci right 8.797774e-03	k: 8963	n:1040000
PDZRN4   1040000 perm   748 sec   (1391 perm/sec)   p_kst 8.618269e-03   p_cons 8.045192e-03   p_joint 8.711538e-04

Joint ci ratio: 1.306833e-01	ci left: 8.002305e-04	ci right 9.130284e-04	k: 898	n:1050000
Cons ci ratio: 4.247455e-02	ci left: 7.875720e-03	ci right 8.218431e-03	k: 8448	n:1050000
KS ci ratio: 4.102586e-02	ci left: 8.443119e-03	ci right 8.797695e-03	k: 9050	n:1050000
PDZRN4   1050000 perm   759 sec   (1383 perm/sec)   p_kst 8.619048e-03   p_cons 8.045714e-03   p_joint 8.552381e-04

Joint ci ratio: 1.301775e-01	ci left: 7.990694e-04	ci right 9.112341e-04	k: 905	n:1060000
Cons ci ratio: 4.225991e-02	ci left: 7.881694e-03	ci right 8.222889e-03	k: 8534	n:1060000
KS ci ratio: 4.084135e-02	ci left: 8.440034e-03	ci right 8.792848e-03	k: 9132	n:1060000
PDZRN4   1060000 perm   771 sec   (1375 perm/sec)   p_kst 8.615094e-03   p_cons 8.050943e-03   p_joint 8.537736e-04

Joint ci ratio: 1.294649e-01	ci left: 8.006438e-04	ci right 9.123670e-04	k: 915	n:1070000
Cons ci ratio: 4.204849e-02	ci left: 7.887560e-03	ci right 8.227260e-03	k: 8620	n:1070000
KS ci ratio: 4.064152e-02	ci left: 8.444411e-03	ci right 8.795640e-03	k: 9222	n:1070000
PDZRN4   1070000 perm   783 sec   (1367 perm/sec)   p_kst 8.618692e-03   p_cons 8.056075e-03   p_joint 8.551402e-04

Joint ci ratio: 1.286944e-01	ci left: 8.030868e-04	ci right 9.144330e-04	k: 926	n:1080000
Cons ci ratio: 4.182568e-02	ci left: 7.898820e-03	ci right 8.237159e-03	k: 8712	n:1080000
KS ci ratio: 4.044240e-02	ci left: 8.449627e-03	ci right 8.799312e-03	k: 9313	n:1080000
PDZRN4   1080000 perm   795 sec   (1359 perm/sec)   p_kst 8.623148e-03   p_cons 8.066667e-03   p_joint 8.574074e-04

Joint ci ratio: 1.296787e-01	ci left: 7.832895e-04	ci right 8.927854e-04	k: 912	n:1090000
Cons ci ratio: 4.164932e-02	ci left: 7.893535e-03	ci right 8.230188e-03	k: 8786	n:1090000
KS ci ratio: 4.024403e-02	ci left: 8.455660e-03	ci right 8.803839e-03	k: 9405	n:1090000
PDZRN4   1090000 perm   807 sec   (1351 perm/sec)   p_kst 8.628440e-03   p_cons 8.060550e-03   p_joint 8.366972e-04

Joint ci ratio: 1.289043e-01	ci left: 7.858453e-04	ci right 8.949924e-04	k: 923	n:1100000
Cons ci ratio: 4.146338e-02	ci left: 7.892848e-03	ci right 8.227932e-03	k: 8865	n:1100000
KS ci ratio: 4.002517e-02	ci left: 8.471489e-03	ci right 8.818379e-03	k: 9508	n:1100000
PDZRN4   1100000 perm   819 sec   (1343 perm/sec)   p_kst 8.643636e-03   p_cons 8.059091e-03   p_joint 8.390909e-04

Joint ci ratio: 1.298934e-01	ci left: 7.665608e-04	ci right 8.739093e-04	k: 909	n:1110000
Cons ci ratio: 4.124506e-02	ci left: 7.905551e-03	ci right 8.239366e-03	k: 8959	n:1110000
KS ci ratio: 3.985587e-02	ci left: 8.467413e-03	ci right 8.812636e-03	k: 9589	n:1110000
PDZRN4   1110000 perm   831 sec   (1336 perm/sec)   p_kst 8.638739e-03   p_cons 8.071171e-03   p_joint 8.189189e-04

Joint ci ratio: 1.292557e-01	ci left: 7.674918e-04	ci right 8.744026e-04	k: 918	n:1120000
Cons ci ratio: 4.104844e-02	ci left: 7.910962e-03	ci right 8.243375e-03	k: 9045	n:1120000
KS ci ratio: 3.966390e-02	ci left: 8.474022e-03	ci right 8.817812e-03	k: 9682	n:1120000
PDZRN4   1120000 perm   843 sec   (1328 perm/sec)   p_kst 8.644643e-03   p_cons 8.075893e-03   p_joint 8.196429e-04

Joint ci ratio: 1.286968e-01	ci left: 7.675510e-04	ci right 8.739725e-04	k: 926	n:1130000
Cons ci ratio: 4.087265e-02	ci left: 7.909273e-03	ci right 8.240159e-03	k: 9123	n:1130000
KS ci ratio: 3.949505e-02	ci left: 8.471755e-03	ci right 8.813957e-03	k: 9765	n:1130000
PDZRN4   1130000 perm   856 sec   (1320 perm/sec)   p_kst 8.641593e-03   p_cons 8.073451e-03   p_joint 8.194690e-04

Joint ci ratio: 1.282137e-01	ci left: 7.667612e-04	ci right 8.726436e-04	k: 933	n:1140000
Cons ci ratio: 4.071695e-02	ci left: 7.900670e-03	ci right 8.229907e-03	k: 9193	n:1140000
KS ci ratio: 3.932029e-02	ci left: 8.473005e-03	ci right 8.813709e-03	k: 9852	n:1140000
PDZRN4   1140000 perm   869 sec   (1313 perm/sec)   p_kst 8.642105e-03   p_cons 8.064035e-03   p_joint 8.184211e-04

Joint ci ratio: 1.278040e-01	ci left: 7.651439e-04	ci right 8.704398e-04	k: 939	n:1150000
Cons ci ratio: 4.057185e-02	ci left: 7.888775e-03	ci right 8.216318e-03	k: 9259	n:1150000
KS ci ratio: 3.918960e-02	ci left: 8.456153e-03	ci right 8.795024e-03	k: 9918	n:1150000
PDZRN4   1150000 perm   881 sec   (1305 perm/sec)   p_kst 8.624348e-03   p_cons 8.051304e-03   p_joint 8.165217e-04

Joint ci ratio: 1.273982e-01	ci left: 7.635551e-04	ci right 8.682735e-04	k: 945	n:1160000
Cons ci ratio: 4.043266e-02	ci left: 7.875381e-03	ci right 8.201220e-03	k: 9323	n:1160000
KS ci ratio: 3.899919e-02	ci left: 8.466060e-03	ci right 8.803642e-03	k: 10015	n:1160000
PDZRN4   1160000 perm   894 sec   (1298 perm/sec)   p_kst 8.633621e-03   p_cons 8.037069e-03   p_joint 8.146552e-04

Joint ci ratio: 1.271969e-01	ci left: 7.595114e-04	ci right 8.634982e-04	k: 948	n:1170000
Cons ci ratio: 4.026463e-02	ci left: 7.874064e-03	ci right 8.198464e-03	k: 9401	n:1170000
KS ci ratio: 3.882121e-02	ci left: 8.471568e-03	ci right 8.807794e-03	k: 10107	n:1170000
PDZRN4   1170000 perm   906 sec   (1291 perm/sec)   p_kst 8.638462e-03   p_cons 8.035043e-03   p_joint 8.102564e-04

Joint ci ratio: 1.267304e-01	ci left: 7.588186e-04	ci right 8.623010e-04	k: 955	n:1180000
Cons ci ratio: 4.009655e-02	ci left: 7.873611e-03	ci right 8.196607e-03	k: 9480	n:1180000
KS ci ratio: 3.867243e-02	ci left: 8.465236e-03	ci right 8.799894e-03	k: 10185	n:1180000
PDZRN4   1180000 perm   919 sec   (1284 perm/sec)   p_kst 8.631356e-03   p_cons 8.033898e-03   p_joint 8.093220e-04

Joint ci ratio: 1.269970e-01	ci left: 7.491871e-04	ci right 8.515871e-04	k: 951	n:1190000
Cons ci ratio: 3.991583e-02	ci left: 7.878993e-03	ci right 8.200719e-03	k: 9566	n:1190000
KS ci ratio: 3.851021e-02	ci left: 8.465671e-03	ci right 8.798912e-03	k: 10271	n:1190000
PDZRN4   1190000 perm   932 sec   (1277 perm/sec)   p_kst 8.631092e-03   p_cons 8.038655e-03   p_joint 7.991597e-04

Joint ci ratio: 1.267977e-01	ci left: 7.453644e-04	ci right 8.470700e-04	k: 954	n:1200000
Cons ci ratio: 3.976246e-02	ci left: 7.874387e-03	ci right 8.194661e-03	k: 9640	n:1200000
KS ci ratio: 3.835188e-02	ci left: 8.465277e-03	ci right 8.797102e-03	k: 10356	n:1200000
PDZRN4   1200000 perm   945 sec   (1270 perm/sec)   p_kst 8.630000e-03   p_cons 8.033333e-03   p_joint 7.950000e-04

Joint ci ratio: 1.269312e-01	ci left: 7.376037e-04	ci right 8.383643e-04	k: 952	n:1210000
Cons ci ratio: 3.959440e-02	ci left: 7.876406e-03	ci right 8.195377e-03	k: 9722	n:1210000
KS ci ratio: 3.820656e-02	ci left: 8.459980e-03	ci right 8.790313e-03	k: 10435	n:1210000
PDZRN4   1210000 perm   957 sec   (1264 perm/sec)   p_kst 8.623967e-03   p_cons 8.034711e-03   p_joint 7.867769e-04

Joint ci ratio: 1.264676e-01	ci left: 7.371137e-04	ci right 8.374119e-04	k: 959	n:1220000
Cons ci ratio: 3.941226e-02	ci left: 7.884888e-03	ci right 8.202701e-03	k: 9812	n:1220000
KS ci ratio: 3.804645e-02	ci left: 8.462079e-03	ci right 8.791080e-03	k: 10523	n:1220000
PDZRN4   1220000 perm   971 sec   (1257 perm/sec)   p_kst 8.625410e-03   p_cons 8.042623e-03   p_joint 7.860656e-04

Joint ci ratio: 1.271324e-01	ci left: 7.232483e-04	ci right 8.222163e-04	k: 949	n:1230000
Cons ci ratio: 3.925659e-02	ci left: 7.883574e-03	ci right 8.200050e-03	k: 9890	n:1230000
KS ci ratio: 3.789375e-02	ci left: 8.461731e-03	ci right 8.789369e-03	k: 10608	n:1230000
PDZRN4   1230000 perm   984 sec   (1250 perm/sec)   p_kst 8.624390e-03   p_cons 8.040650e-03   p_joint 7.715447e-04

Joint ci ratio: 1.264026e-01	ci left: 7.260054e-04	ci right 8.247375e-04	k: 960	n:1240000
Cons ci ratio: 3.912253e-02	ci left: 7.874297e-03	ci right 8.189298e-03	k: 9958	n:1240000
KS ci ratio: 3.776069e-02	ci left: 8.453403e-03	ci right 8.779544e-03	k: 10683	n:1240000
PDZRN4   1240000 perm   997 sec   (1244 perm/sec)   p_kst 8.615323e-03   p_cons 8.030645e-03   p_joint 7.741935e-04

Joint ci ratio: 1.256851e-01	ci left: 7.287200e-04	ci right 8.272169e-04	k: 971	n:1250000
Cons ci ratio: 3.897222e-02	ci left: 7.872301e-03	ci right 8.185985e-03	k: 10035	n:1250000
KS ci ratio: 3.758499e-02	ci left: 8.465023e-03	ci right 8.790060e-03	k: 10783	n:1250000
PDZRN4   1250000 perm   1010 sec   (1237 perm/sec)   p_kst 8.626400e-03   p_cons 8.028000e-03   p_joint 7.768000e-04

Joint ci ratio: 1.258151e-01	ci left: 7.213989e-04	ci right 8.190147e-04	k: 969	n:1260000
Cons ci ratio: 3.882749e-02	ci left: 7.868767e-03	ci right 8.181120e-03	k: 10110	n:1260000
KS ci ratio: 3.744297e-02	ci left: 8.462309e-03	ci right 8.785988e-03	k: 10865	n:1260000
PDZRN4   1260000 perm   1024 sec   (1231 perm/sec)   p_kst 8.623016e-03   p_cons 8.023810e-03   p_joint 7.690476e-04

Joint ci ratio: 1.254279e-01	ci left: 7.202945e-04	ci right 8.174386e-04	k: 975	n:1270000
Cons ci ratio: 3.866332e-02	ci left: 7.873869e-03	ci right 8.185074e-03	k: 10196	n:1270000
KS ci ratio: 3.732663e-02	ci left: 8.448718e-03	ci right 8.770851e-03	k: 10933	n:1270000
PDZRN4   1270000 perm   1037 sec   (1224 perm/sec)   p_kst 8.608661e-03   p_cons 8.028346e-03   p_joint 7.677165e-04

Joint ci ratio: 1.249805e-01	ci left: 7.199647e-04	ci right 8.166923e-04	k: 982	n:1280000
Cons ci ratio: 3.852010e-02	ci left: 7.871157e-03	ci right 8.181076e-03	k: 10272	n:1280000
KS ci ratio: 3.717219e-02	ci left: 8.453145e-03	ci right 8.774085e-03	k: 11024	n:1280000
PDZRN4   1280000 perm   1051 sec   (1218 perm/sec)   p_kst 8.612500e-03   p_cons 8.025000e-03   p_joint 7.671875e-04

Joint ci ratio: 1.258162e-01	ci left: 7.046218e-04	ci right 7.999683e-04	k: 969	n:1290000
Cons ci ratio: 3.838408e-02	ci left: 7.866185e-03	ci right 8.174790e-03	k: 10345	n:1290000
KS ci ratio: 3.699448e-02	ci left: 8.469026e-03	ci right 8.789000e-03	k: 11130	n:1290000
PDZRN4   1290000 perm   1065 sec   (1212 perm/sec)   p_kst 8.627907e-03   p_cons 8.019380e-03   p_joint 7.511628e-04

Joint ci ratio: 1.256223e-01	ci left: 7.014367e-04	ci right 7.961950e-04	k: 972	n:1300000
Cons ci ratio: 3.822545e-02	ci left: 7.871196e-03	ci right 8.178694e-03	k: 10431	n:1300000
KS ci ratio: 3.686566e-02	ci left: 8.463326e-03	ci right 8.781946e-03	k: 11208	n:1300000
PDZRN4   1300000 perm   1078 sec   (1206 perm/sec)   p_kst 8.621538e-03   p_cons 8.023846e-03   p_joint 7.476923e-04

Joint ci ratio: 1.256874e-01	ci left: 6.953427e-04	ci right 7.893300e-04	k: 971	n:1310000
Cons ci ratio: 3.808154e-02	ci left: 7.870841e-03	ci right 8.177142e-03	k: 10510	n:1310000
KS ci ratio: 3.672505e-02	ci left: 8.463765e-03	ci right 8.781161e-03	k: 11294	n:1310000
PDZRN4   1310000 perm   1092 sec   (1199 perm/sec)   p_kst 8.621374e-03   p_cons 8.022901e-03   p_joint 7.412214e-04

Joint ci ratio: 1.252372e-01	ci left: 6.952116e-04	ci right 7.888196e-04	k: 978	n:1320000
Cons ci ratio: 3.793925e-02	ci left: 7.870493e-03	ci right 8.175611e-03	k: 10589	n:1320000
KS ci ratio: 3.655203e-02	ci left: 8.479965e-03	ci right 8.796439e-03	k: 11401	n:1320000
PDZRN4   1320000 perm   1106 sec   (1193 perm/sec)   p_kst 8.637121e-03   p_cons 8.021970e-03   p_joint 7.409091e-04

Joint ci ratio: 1.249823e-01	ci left: 6.928978e-04	ci right 7.859903e-04	k: 982	n:1330000
Cons ci ratio: 3.777714e-02	ci left: 7.879090e-03	ci right 8.183208e-03	k: 10680	n:1330000
KS ci ratio: 3.644217e-02	ci left: 8.467611e-03	ci right 8.782655e-03	k: 11470	n:1330000
PDZRN4   1330000 perm   1120 sec   (1187 perm/sec)   p_kst 8.624060e-03   p_cons 8.030075e-03   p_joint 7.383459e-04

Joint ci ratio: 1.245397e-01	ci left: 6.927877e-04	ci right 7.855115e-04	k: 989	n:1340000
Cons ci ratio: 3.763998e-02	ci left: 7.877951e-03	ci right 8.180898e-03	k: 10758	n:1340000
KS ci ratio: 3.630158e-02	ci left: 8.470234e-03	ci right 8.784134e-03	k: 11559	n:1340000
PDZRN4   1340000 perm   1134 sec   (1181 perm/sec)   p_kst 8.626119e-03   p_cons 8.028358e-03   p_joint 7.380597e-04

Joint ci ratio: 1.276081e-01	ci left: 6.539381e-04	ci right 7.437819e-04	k: 942	n:1350000
Cons ci ratio: 3.750955e-02	ci left: 7.874629e-03	ci right 8.176376e-03	k: 10833	n:1350000
KS ci ratio: 3.618455e-02	ci left: 8.462543e-03	ci right 8.775126e-03	k: 11634	n:1350000
PDZRN4   1350000 perm   1148 sec   (1175 perm/sec)   p_kst 8.617778e-03   p_cons 8.024444e-03   p_joint 6.977778e-04

Joint ci ratio: 1.274733e-01	ci left: 6.505534e-04	ci right 7.398305e-04	k: 944	n:1360000
Cons ci ratio: 3.739255e-02	ci left: 7.866259e-03	ci right 8.166724e-03	k: 10901	n:1360000
KS ci ratio: 3.604225e-02	ci left: 8.467355e-03	ci right 8.778861e-03	k: 11726	n:1360000
PDZRN4   1360000 perm   1163 sec   (1169 perm/sec)   p_kst 8.622059e-03   p_cons 8.015441e-03   p_joint 6.941176e-04

Joint ci ratio: 1.271374e-01	ci left: 6.493382e-04	ci right 7.381961e-04	k: 949	n:1370000
Cons ci ratio: 3.726295e-02	ci left: 7.863797e-03	ci right 8.163106e-03	k: 10977	n:1370000
KS ci ratio: 3.590775e-02	ci left: 8.469206e-03	ci right 8.779592e-03	k: 11814	n:1370000
PDZRN4   1370000 perm   1177 sec   (1164 perm/sec)   p_kst 8.623358e-03   p_cons 8.012409e-03   p_joint 6.927007e-04

Joint ci ratio: 1.282229e-01	ci left: 6.334086e-04	ci right 7.208829e-04	k: 933	n:1380000
Cons ci ratio: 3.710594e-02	ci left: 7.873579e-03	ci right 8.171970e-03	k: 11070	n:1380000
KS ci ratio: 3.575960e-02	ci left: 8.478213e-03	ci right 8.787622e-03	k: 11912	n:1380000
PDZRN4   1380000 perm   1191 sec   (1158 perm/sec)   p_kst 8.631884e-03   p_cons 8.021739e-03   p_joint 6.760870e-04

Joint ci ratio: 1.278130e-01	ci left: 6.330300e-04	ci right 7.201514e-04	k: 939	n:1390000
Cons ci ratio: 3.695423e-02	ci left: 7.881796e-03	ci right 8.179252e-03	k: 11161	n:1390000
KS ci ratio: 3.563722e-02	ci left: 8.475685e-03	ci right 8.783921e-03	k: 11994	n:1390000
PDZRN4   1390000 perm   1206 sec   (1153 perm/sec)   p_kst 8.628777e-03   p_cons 8.029496e-03   p_joint 6.755396e-04

Joint ci ratio: 1.272725e-01	ci left: 6.340403e-04	ci right 7.209040e-04	k: 947	n:1400000
Cons ci ratio: 3.680766e-02	ci left: 7.888484e-03	ci right 8.184986e-03	k: 11250	n:1400000
KS ci ratio: 3.550719e-02	ci left: 8.477443e-03	ci right 8.784595e-03	k: 12082	n:1400000
PDZRN4   1400000 perm   1221 sec   (1147 perm/sec)   p_kst 8.630000e-03   p_cons 8.035714e-03   p_joint 6.764286e-04

Joint ci ratio: 1.268717e-01	ci left: 6.336637e-04	ci right 7.201817e-04	k: 953	n:1410000
Cons ci ratio: 3.670036e-02	ci left: 7.878915e-03	ci right 8.174175e-03	k: 11316	n:1410000
KS ci ratio: 3.538443e-02	ci left: 8.476366e-03	ci right 8.782396e-03	k: 12166	n:1410000
PDZRN4   1410000 perm   1235 sec   (1142 perm/sec)   p_kst 8.628369e-03   p_cons 8.025532e-03   p_joint 6.758865e-04

Joint ci ratio: 1.261463e-01	ci left: 6.367026e-04	ci right 7.231014e-04	k: 964	n:1420000
Cons ci ratio: 3.658752e-02	ci left: 7.872273e-03	ci right 8.166359e-03	k: 11386	n:1420000
KS ci ratio: 3.525569e-02	ci left: 8.478796e-03	ci right 8.783777e-03	k: 12255	n:1420000
PDZRN4   1420000 perm   1250 sec   (1136 perm/sec)   p_kst 8.630282e-03   p_cons 8.018310e-03   p_joint 6.788732e-04

Joint ci ratio: 1.257560e-01	ci left: 6.363138e-04	ci right 7.223727e-04	k: 970	n:1430000
Cons ci ratio: 3.646929e-02	ci left: 7.868497e-03	ci right 8.161472e-03	k: 11460	n:1430000
KS ci ratio: 3.512404e-02	ci left: 8.483273e-03	ci right 8.787253e-03	k: 12347	n:1430000
PDZRN4   1430000 perm   1265 sec   (1131 perm/sec)   p_kst 8.634266e-03   p_cons 8.013986e-03   p_joint 6.783217e-04

Joint ci ratio: 1.262779e-01	ci left: 6.265143e-04	ci right 7.116259e-04	k: 962	n:1440000
Cons ci ratio: 3.635855e-02	ci left: 7.862023e-03	ci right 8.153850e-03	k: 11530	n:1440000
KS ci ratio: 3.501230e-02	ci left: 8.478741e-03	ci right 8.781573e-03	k: 12426	n:1440000
PDZRN4   1440000 perm   1280 sec   (1125 perm/sec)   p_kst 8.629167e-03   p_cons 8.006944e-03   p_joint 6.680556e-04

Joint ci ratio: 1.257566e-01	ci left: 6.275368e-04	ci right 7.124092e-04	k: 970	n:1450000
Cons ci ratio: 3.624725e-02	ci left: 7.856323e-03	ci right 8.147027e-03	k: 11601	n:1450000
KS ci ratio: 3.490445e-02	ci left: 8.472906e-03	ci right 8.774579e-03	k: 12503	n:1450000
PDZRN4   1450000 perm   1295 sec   (1120 perm/sec)   p_kst 8.622759e-03   p_cons 8.000690e-03   p_joint 6.689655e-04

Joint ci ratio: 1.249864e-01	ci left: 6.312001e-04	ci right 7.160064e-04	k: 982	n:1460000
Cons ci ratio: 3.612604e-02	ci left: 7.855454e-03	ci right 8.145133e-03	k: 11679	n:1460000
KS ci ratio: 3.479758e-02	ci left: 8.467152e-03	ci right 8.767679e-03	k: 12580	n:1460000
PDZRN4   1460000 perm   1310 sec   (1115 perm/sec)   p_kst 8.616438e-03   p_cons 7.999315e-03   p_joint 6.726027e-04

Joint ci ratio: 1.258870e-01	ci left: 6.176810e-04	ci right 7.013134e-04	k: 968	n:1470000
Cons ci ratio: 3.600295e-02	ci left: 7.855946e-03	ci right 8.144637e-03	k: 11759	n:1470000
KS ci ratio: 3.465994e-02	ci left: 8.476990e-03	ci right 8.776652e-03	k: 12680	n:1470000
PDZRN4   1470000 perm   1325 sec   (1109 perm/sec)   p_kst 8.625850e-03   p_cons 7.999320e-03   p_joint 6.585034e-04

Joint ci ratio: 1.253705e-01	ci left: 6.187430e-04	ci right 7.021500e-04	k: 976	n:1480000
Cons ci ratio: 3.590711e-02	ci left: 7.845050e-03	ci right 8.132556e-03	k: 11822	n:1480000
KS ci ratio: 3.453210e-02	ci left: 8.482677e-03	ci right 8.781412e-03	k: 12774	n:1480000
PDZRN4   1480000 perm   1341 sec   (1104 perm/sec)   p_kst 8.631081e-03   p_cons 7.987838e-03   p_joint 6.594595e-04

Joint ci ratio: 1.249873e-01	ci left: 6.184911e-04	ci right 7.015905e-04	k: 982	n:1490000
Cons ci ratio: 3.576807e-02	ci left: 7.853591e-03	ci right 8.140273e-03	k: 11914	n:1490000
KS ci ratio: 3.440836e-02	ci left: 8.486960e-03	ci right 8.784753e-03	k: 12866	n:1490000
PDZRN4   1490000 perm   1356 sec   (1099 perm/sec)   p_kst 8.634899e-03   p_cons 7.995973e-03   p_joint 6.590604e-04

Joint ci ratio: 1.076024e-01	ci left: 8.364247e-04	ci right 9.321859e-04	k: 1325	n:1500000
Cons ci ratio: 3.563212e-02	ci left: 7.861359e-03	ci right 8.147212e-03	k: 12005	n:1500000
KS ci ratio: 3.428327e-02	ci left: 8.492509e-03	ci right 8.789393e-03	k: 12960	n:1500000
PDZRN4   1500000 perm   1372 sec   (1093 perm/sec)   p_kst 8.640000e-03   p_cons 8.003333e-03   p_joint 8.833333e-04

Joint ci ratio: 1.073599e-01	ci left: 8.347521e-04	ci right 9.300928e-04	k: 1331	n:1510000
Cons ci ratio: 3.548294e-02	ci left: 7.875591e-03	ci right 8.160738e-03	k: 12106	n:1510000
KS ci ratio: 3.415953e-02	ci left: 8.497987e-03	ci right 8.793969e-03	k: 13054	n:1510000
PDZRN4   1510000 perm   1387 sec   (1089 perm/sec)   p_kst 8.645033e-03   p_cons 8.017219e-03   p_joint 8.814570e-04

Joint ci ratio: 1.069193e-01	ci left: 8.363033e-04	ci right 9.314045e-04	k: 1342	n:1520000
Cons ci ratio: 3.533999e-02	ci left: 7.887682e-03	ci right 8.172092e-03	k: 12204	n:1520000
KS ci ratio: 3.405150e-02	ci left: 8.496218e-03	ci right 8.791185e-03	k: 13137	n:1520000
PDZRN4   1520000 perm   1403 sec   (1084 perm/sec)   p_kst 8.642763e-03   p_cons 8.028947e-03   p_joint 8.828947e-04

Joint ci ratio: 1.074818e-01	ci left: 8.219320e-04	ci right 9.159217e-04	k: 1328	n:1530000
Cons ci ratio: 3.522329e-02	ci left: 7.888602e-03	ci right 8.172088e-03	k: 12285	n:1530000
KS ci ratio: 3.393542e-02	ci left: 8.499011e-03	ci right 8.793049e-03	k: 13227	n:1530000
PDZRN4   1530000 perm   1418 sec   (1079 perm/sec)   p_kst 8.645098e-03   p_cons 8.029412e-03   p_joint 8.679739e-04

Joint ci ratio: 1.075631e-01	ci left: 8.153308e-04	ci right 9.086407e-04	k: 1326	n:1540000
Cons ci ratio: 3.510202e-02	ci left: 7.892087e-03	ci right 8.174702e-03	k: 12370	n:1540000
KS ci ratio: 3.382053e-02	ci left: 8.501770e-03	ci right 8.794888e-03	k: 13317	n:1540000
PDZRN4   1540000 perm   1434 sec   (1074 perm/sec)   p_kst 8.647403e-03   p_cons 8.032468e-03   p_joint 8.610390e-04

Joint ci ratio: 1.071600e-01	ci left: 8.163490e-04	ci right 9.094032e-04	k: 1336	n:1550000
Cons ci ratio: 3.497916e-02	ci left: 7.896808e-03	ci right 8.178583e-03	k: 12457	n:1550000
KS ci ratio: 3.372709e-02	ci left: 8.494258e-03	ci right 8.786292e-03	k: 13391	n:1550000
PDZRN4   1550000 perm   1450 sec   (1069 perm/sec)   p_kst 8.639355e-03   p_cons 8.036774e-03   p_joint 8.619355e-04

Joint ci ratio: 1.070003e-01	ci left: 8.136114e-04	ci right 9.062066e-04	k: 1340	n:1560000
Cons ci ratio: 3.486039e-02	ci left: 7.900200e-03	ci right 8.181119e-03	k: 12542	n:1560000
KS ci ratio: 3.363317e-02	ci left: 8.487479e-03	ci right 8.778452e-03	k: 13466	n:1560000
PDZRN4   1560000 perm   1466 sec   (1064 perm/sec)   p_kst 8.632051e-03   p_cons 8.039744e-03   p_joint 8.589744e-04

Joint ci ratio: 1.066825e-01	ci left: 8.133885e-04	ci right 9.056662e-04	k: 1348	n:1570000
Cons ci ratio: 3.477754e-02	ci left: 7.887763e-03	ci right 8.167560e-03	k: 12602	n:1570000
KS ci ratio: 3.354253e-02	ci left: 8.479524e-03	ci right 8.769426e-03	k: 13539	n:1570000
PDZRN4   1570000 perm   1482 sec   (1059 perm/sec)   p_kst 8.623567e-03   p_cons 8.026752e-03   p_joint 8.585987e-04

Joint ci ratio: 1.064462e-01	ci left: 8.119367e-04	ci right 9.038328e-04	k: 1354	n:1580000
Cons ci ratio: 3.466906e-02	ci left: 7.887406e-03	ci right 8.166300e-03	k: 12681	n:1580000
KS ci ratio: 3.342290e-02	ci left: 8.486736e-03	ci right 8.775829e-03	k: 13636	n:1580000
PDZRN4   1580000 perm   1498 sec   (1055 perm/sec)   p_kst 8.630380e-03   p_cons 8.025949e-03   p_joint 8.569620e-04

Joint ci ratio: 1.060555e-01	ci left: 8.129524e-04	ci right 9.046047e-04	k: 1364	n:1590000
Cons ci ratio: 3.453569e-02	ci left: 7.898903e-03	ci right 8.177108e-03	k: 12779	n:1590000
KS ci ratio: 3.332291e-02	ci left: 8.484502e-03	ci right 8.772638e-03	k: 13718	n:1590000
PDZRN4   1590000 perm   1514 sec   (1050 perm/sec)   p_kst 8.627673e-03   p_cons 8.037107e-03   p_joint 8.578616e-04

Joint ci ratio: 1.056306e-01	ci left: 8.145645e-04	ci right 9.060078e-04	k: 1375	n:1600000
Cons ci ratio: 3.442810e-02	ci left: 7.899103e-03	ci right 8.176432e-03	k: 12859	n:1600000
KS ci ratio: 3.323475e-02	ci left: 8.476718e-03	ci right 8.763815e-03	k: 13791	n:1600000
PDZRN4   1600000 perm   1530 sec   (1046 perm/sec)   p_kst 8.619375e-03   p_cons 8.036875e-03   p_joint 8.593750e-04

Joint ci ratio: 1.052488e-01	ci left: 8.155525e-04	ci right 9.067553e-04	k: 1385	n:1610000
Cons ci ratio: 3.431350e-02	ci left: 7.902998e-03	ci right 8.179521e-03	k: 12945	n:1610000
KS ci ratio: 3.311237e-02	ci left: 8.486897e-03	ci right 8.773260e-03	k: 13893	n:1610000
PDZRN4   1610000 perm   1547 sec   (1041 perm/sec)   p_kst 8.629193e-03   p_cons 8.040373e-03   p_joint 8.602484e-04

Joint ci ratio: 1.056312e-01	ci left: 8.045079e-04	ci right 8.948228e-04	k: 1375	n:1620000
Cons ci ratio: 3.421327e-02	ci left: 7.900726e-03	ci right 8.176346e-03	k: 13021	n:1620000
KS ci ratio: 3.301036e-02	ci left: 8.487157e-03	ci right 8.772629e-03	k: 13979	n:1620000
PDZRN4   1620000 perm   1563 sec   (1036 perm/sec)   p_kst 8.629012e-03   p_cons 8.037654e-03   p_joint 8.487654e-04

Joint ci ratio: 1.052114e-01	ci left: 8.061428e-04	ci right 8.962594e-04	k: 1386	n:1630000
Cons ci ratio: 3.411522e-02	ci left: 7.897874e-03	ci right 8.172590e-03	k: 13096	n:1630000
KS ci ratio: 3.290222e-02	ci left: 8.491065e-03	ci right 8.775716e-03	k: 14071	n:1630000
PDZRN4   1630000 perm   1580 sec   (1032 perm/sec)   p_kst 8.632515e-03   p_cons 8.034356e-03   p_joint 8.503067e-04

Joint ci ratio: 1.047966e-01	ci left: 8.077585e-04	ci right 8.976777e-04	k: 1397	n:1640000
Cons ci ratio: 3.399071e-02	ci left: 7.907755e-03	ci right 8.181791e-03	k: 13192	n:1640000
KS ci ratio: 3.280682e-02	ci left: 8.488879e-03	ci right 8.772616e-03	k: 14153	n:1640000
PDZRN4   1640000 perm   1597 sec   (1027 perm/sec)   p_kst 8.629878e-03   p_cons 8.043902e-03   p_joint 8.518293e-04

Joint ci ratio: 1.044980e-01	ci left: 8.075846e-04	ci right 8.972126e-04	k: 1405	n:1650000
Cons ci ratio: 3.389585e-02	ci left: 7.904297e-03	ci right 8.177434e-03	k: 13266	n:1650000
KS ci ratio: 3.270761e-02	ci left: 8.489126e-03	ci right 8.771997e-03	k: 14239	n:1650000
PDZRN4   1650000 perm   1613 sec   (1023 perm/sec)   p_kst 8.629697e-03   p_cons 8.040000e-03   p_joint 8.515152e-04

Joint ci ratio: 1.052122e-01	ci left: 7.915737e-04	ci right 8.800623e-04	k: 1386	n:1660000
Cons ci ratio: 3.378901e-02	ci left: 7.906855e-03	ci right 8.179203e-03	k: 13350	n:1660000
KS ci ratio: 3.261158e-02	ci left: 8.488176e-03	ci right 8.770169e-03	k: 14323	n:1660000
PDZRN4   1660000 perm   1630 sec   (1018 perm/sec)   p_kst 8.628313e-03   p_cons 8.042169e-03   p_joint 8.349398e-04

Joint ci ratio: 1.050988e-01	ci left: 7.885828e-04	ci right 8.766361e-04	k: 1389	n:1670000
Cons ci ratio: 3.370215e-02	ci left: 7.900477e-03	ci right 8.171892e-03	k: 13419	n:1670000
KS ci ratio: 3.249821e-02	ci left: 8.496742e-03	ci right 8.778020e-03	k: 14423	n:1670000
PDZRN4   1670000 perm   1647 sec   (1014 perm/sec)   p_kst 8.636527e-03   p_cons 8.035329e-03   p_joint 8.317365e-04

Joint ci ratio: 1.048352e-01	ci left: 7.879461e-04	ci right 8.756941e-04	k: 1396	n:1680000
Cons ci ratio: 3.360090e-02	ci left: 7.901259e-03	ci right 8.171870e-03	k: 13500	n:1680000
KS ci ratio: 3.240289e-02	ci left: 8.496351e-03	ci right 8.776776e-03	k: 14508	n:1680000
PDZRN4   1680000 perm   1664 sec   (1009 perm/sec)   p_kst 8.635714e-03   p_cons 8.035714e-03   p_joint 8.309524e-04

Joint ci ratio: 1.044991e-01	ci left: 7.884698e-04	ci right 8.759773e-04	k: 1405	n:1690000
Cons ci ratio: 3.348936e-02	ci left: 7.907314e-03	ci right 8.177216e-03	k: 13590	n:1690000
KS ci ratio: 3.231175e-02	ci left: 8.494205e-03	ci right 8.773755e-03	k: 14590	n:1690000
PDZRN4   1690000 perm   1682 sec   (1005 perm/sec)   p_kst 8.633136e-03   p_cons 8.041420e-03   p_joint 8.313609e-04

Joint ci ratio: 1.040926e-01	ci left: 7.901336e-04	ci right 8.774637e-04	k: 1416	n:1700000
Cons ci ratio: 3.339493e-02	ci left: 7.905716e-03	ci right 8.174788e-03	k: 13667	n:1700000
KS ci ratio: 3.220588e-02	ci left: 8.500254e-03	ci right 8.779071e-03	k: 14686	n:1700000
PDZRN4   1700000 perm   1699 sec   (1000 perm/sec)   p_kst 8.638824e-03   p_cons 8.039412e-03   p_joint 8.329412e-04

Joint ci ratio: 1.038365e-01	ci left: 7.895000e-04	ci right 8.765324e-04	k: 1423	n:1710000
Cons ci ratio: 3.331840e-02	ci left: 7.896018e-03	ci right 8.164132e-03	k: 13730	n:1710000
KS ci ratio: 3.210762e-02	ci left: 8.502754e-03	ci right 8.780786e-03	k: 14776	n:1710000
PDZRN4   1710000 perm   1716 sec   (996 perm/sec)   p_kst 8.640936e-03   p_cons 8.029240e-03   p_joint 8.321637e-04

Joint ci ratio: 1.042036e-01	ci left: 7.792470e-04	ci right 8.654713e-04	k: 1413	n:1720000
Cons ci ratio: 3.320481e-02	ci left: 7.904308e-03	ci right 8.171771e-03	k: 13824	n:1720000
KS ci ratio: 3.201134e-02	ci left: 8.504649e-03	ci right 8.781893e-03	k: 14865	n:1720000
PDZRN4   1720000 perm   1734 sec   (992 perm/sec)   p_kst 8.642442e-03   p_cons 8.037209e-03   p_joint 8.215116e-04

Joint ci ratio: 1.040934e-01	ci left: 7.764315e-04	ci right 8.622479e-04	k: 1416	n:1730000
Cons ci ratio: 3.310435e-02	ci left: 7.906771e-03	ci right 8.173493e-03	k: 13908	n:1730000
KS ci ratio: 3.192777e-02	ci left: 8.500215e-03	ci right 8.776578e-03	k: 14943	n:1730000
PDZRN4   1730000 perm   1751 sec   (988 perm/sec)   p_kst 8.637572e-03   p_cons 8.039306e-03   p_joint 8.184971e-04

Joint ci ratio: 1.034382e-01	ci left: 7.820458e-04	ci right 8.679056e-04	k: 1434	n:1740000
Cons ci ratio: 3.299530e-02	ci left: 7.913767e-03	ci right 8.179829e-03	k: 14000	n:1740000
KS ci ratio: 3.183203e-02	ci left: 8.502675e-03	ci right 8.778274e-03	k: 15033	n:1740000
PDZRN4   1740000 perm   1769 sec   (984 perm/sec)   p_kst 8.639655e-03   p_cons 8.045977e-03   p_joint 8.241379e-04

Joint ci ratio: 1.031510e-01	ci left: 7.820303e-04	ci right 8.676356e-04	k: 1442	n:1750000
Cons ci ratio: 3.292738e-02	ci left: 7.901414e-03	ci right 8.166503e-03	k: 14058	n:1750000
KS ci ratio: 3.174349e-02	ci left: 8.501707e-03	ci right 8.776494e-03	k: 15117	n:1750000
PDZRN4   1750000 perm   1786 sec   (980 perm/sec)   p_kst 8.638286e-03   p_cons 8.033143e-03   p_joint 8.240000e-04

Joint ci ratio: 1.028663e-01	ci left: 7.820153e-04	ci right 8.673684e-04	k: 1450	n:1760000
Cons ci ratio: 3.283293e-02	ci left: 7.902164e-03	ci right 8.166504e-03	k: 14139	n:1760000
KS ci ratio: 3.165359e-02	ci left: 8.501878e-03	ci right 8.775879e-03	k: 15203	n:1760000
PDZRN4   1760000 perm   1804 sec   (976 perm/sec)   p_kst 8.638068e-03   p_cons 8.033523e-03   p_joint 8.238636e-04

Joint ci ratio: 9.585011e-02	ci left: 8.988086e-04	ci right 9.898426e-04	k: 1670	n:1770000
Cons ci ratio: 3.273116e-02	ci left: 7.906830e-03	ci right 8.170490e-03	k: 14227	n:1770000
KS ci ratio: 3.156549e-02	ci left: 8.501488e-03	ci right 8.774700e-03	k: 15288	n:1770000
PDZRN4   1770000 perm   1822 sec   (971 perm/sec)   p_kst 8.637288e-03   p_cons 8.037853e-03   p_joint 9.435028e-04

Outputting figure to mutsig2_images.part000000000129/PDZRN4.17_3224_1770000_0.0086373_0.0080379_0.0009435.png
                gene_name: PDZRN4
               theta_stop: 0.096 
                    nperm: 1770000 
                     p_ks: 0.0086 
        ci_ks_bounds_left: 0.0085 
       ci_ks_bounds_right: 0.0088 
                   p_cons: 0.0080 
      ci_cons_bounds_left: 0.0079 
     ci_cons_bounds_right: 0.0082 
                  p_joint: 0.00094 
     ci_joint_bounds_left: 0.00090 
    ci_joint_bounds_right: 0.00099 

Current progress: 8 percent done.
PDZRN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.637447e-02	ci left: 2.004751e-01	ci right 2.164950e-01	k: 2084	n:10000
Cons ci ratio: 2.047888e-02	ci left: 7.774236e-01	ci right 7.936097e-01	k: 7856	n:10000
KS ci ratio: 1.237387e-01	ci left: 8.552985e-02	ci right 9.690958e-02	k: 911	n:10000
PDZRN3   10000 perm   2 sec   (4464 perm/sec)   p_kst 9.110000e-02   p_cons 7.856000e-01   p_joint 2.084000e-01

Joint ci ratio: 6.495396e-02	ci left: 1.490232e-01	ci right 1.590776e-01	k: 3080	n:20000
Cons ci ratio: 1.462664e-02	ci left: 7.764139e-01	ci right 7.879040e-01	k: 15644	n:20000
KS ci ratio: 8.687077e-02	ci left: 8.837200e-02	ci right 9.644695e-02	k: 1847	n:20000
PDZRN3   20000 perm   5 sec   (4051 perm/sec)   p_kst 9.235000e-02   p_cons 7.822000e-01   p_joint 1.540000e-01

Outputting figure to mutsig2_images.part000000000129/PDZRN3.9_3241_20000_0.09235_0.7822_0.154.png
                gene_name: PDZRN3
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 10 percent done.
PER3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.173326e-02	ci left: 1.793015e-01	ci right 1.946813e-01	k: 1869	n:10000
Cons ci ratio: 4.837274e-02	ci left: 3.866946e-01	ci right 4.059658e-01	k: 3963	n:10000
KS ci ratio: 9.930804e-02	ci left: 1.280657e-01	ci right 1.415478e-01	k: 1347	n:10000
PER3   10000 perm   2 sec   (4052 perm/sec)   p_kst 1.347000e-01   p_cons 3.963000e-01   p_joint 1.869000e-01

Outputting figure to mutsig2_images.part000000000129/PER3.9_3690_10000_0.1347_0.3963_0.1869.png
                gene_name: PER3
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 12 percent done.
PEX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.207405e-02	ci left: 4.547863e-01	ci right 4.744343e-01	k: 4646	n:10000
Cons ci ratio: 3.036125e-02	ci left: 6.154261e-01	ci right 6.345011e-01	k: 6250	n:10000
KS ci ratio: 6.036682e-02	ci left: 2.875589e-01	ci right 3.055598e-01	k: 2965	n:10000
PEX3   10000 perm   2 sec   (5312 perm/sec)   p_kst 2.965000e-01   p_cons 6.250000e-01   p_joint 4.646000e-01

Outputting figure to mutsig2_images.part000000000129/PEX3.8_1170_10000_0.2965_0.625_0.4646.png
                gene_name: PEX3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 15 percent done.
PGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.786852e-02	ci left: 5.073522e-01	ci right 5.270378e-01	k: 5172	n:10000
Cons ci ratio: 6.535019e-02	ci left: 2.558748e-01	ci right 2.732625e-01	k: 2645	n:10000
KS ci ratio: 3.172396e-02	ci left: 5.945361e-01	ci right 6.138031e-01	k: 6042	n:10000
PGAP1   10000 perm   2 sec   (4393 perm/sec)   p_kst 6.042000e-01   p_cons 2.645000e-01   p_joint 5.172000e-01

Outputting figure to mutsig2_images.part000000000129/PGAP1.8_2877_10000_0.6042_0.2645_0.5172.png
                gene_name: PGAP1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 18 percent done.
PDZD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.134564e-02	ci left: 4.634731e-01	ci right 4.831424e-01	k: 4733	n:10000
Cons ci ratio: 3.149235e-02	ci left: 5.980500e-01	ci right 6.172873e-01	k: 6077	n:10000
KS ci ratio: 7.936649e-02	ci left: 1.882589e-01	ci right 2.039185e-01	k: 1960	n:10000
PDZD8   10000 perm   2 sec   (4451 perm/sec)   p_kst 1.960000e-01   p_cons 6.077000e-01   p_joint 4.733000e-01

Outputting figure to mutsig2_images.part000000000129/PDZD8.7_3485_10000_0.196_0.6077_0.4733.png
                gene_name: PDZD8
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 20 percent done.
PFKFB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.139998e-02	ci left: 5.994557e-01	ci right 6.186808e-01	k: 6091	n:10000
KS ci ratio: 1.122343e-02	ci left: 9.189410e-01	ci right 9.294103e-01	k: 9243	n:10000
PFKFB1   10000 perm   2 sec   (5860 perm/sec)   p_kst 9.243000e-01   p_cons 6.091000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PFKFB1.7_1472_10000_0.9243_0.6091_1.png
                gene_name: PFKFB1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
PGBD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.335471e-02	ci left: 1.734975e-01	ci right 1.886888e-01	k: 1810	n:10000
Cons ci ratio: 5.147127e-02	ci left: 3.575431e-01	ci right 3.765344e-01	k: 3670	n:10000
KS ci ratio: 9.526235e-02	ci left: 1.378591e-01	ci right 1.517485e-01	k: 1447	n:10000
PGBD3   10000 perm   2 sec   (5345 perm/sec)   p_kst 1.447000e-01   p_cons 3.670000e-01   p_joint 1.810000e-01

Outputting figure to mutsig2_images.part000000000129/PGBD3.7_1786_10000_0.1447_0.367_0.181.png
                gene_name: PGBD3
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 25 percent done.
PGBD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.447022e-02	ci left: 3.318056e-01	ci right 3.504870e-01	k: 3411	n:10000
Cons ci ratio: 2.967861e-02	ci left: 6.260790e-01	ci right 6.450419e-01	k: 6356	n:10000
KS ci ratio: 8.321448e-02	ci left: 1.739892e-01	ci right 1.891967e-01	k: 1815	n:10000
PGBD1   10000 perm   2 sec   (4829 perm/sec)   p_kst 1.815000e-01   p_cons 6.356000e-01   p_joint 3.411000e-01

Outputting figure to mutsig2_images.part000000000129/PGBD1.6_2454_10000_0.1815_0.6356_0.3411.png
                gene_name: PGBD1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 28 percent done.
PDSS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
Cons ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
KS ci ratio: 5.233511e-02	ci left: 3.498883e-01	ci right 3.687937e-01	k: 3593	n:10000
PDSS1   10000 perm   2 sec   (5306 perm/sec)   p_kst 3.593000e-01   p_cons 1.700000e-03   p_joint 1.200000e-02

Joint ci ratio: 1.720426e-01	ci left: 2.311997e-02	ci right 2.751951e-02	k: 505	n:20000
Cons ci ratio: 6.115581e-01	ci left: 1.429202e-03	ci right 2.722447e-03	k: 40	n:20000
KS ci ratio: 3.711514e-02	ci left: 3.513518e-01	ci right 3.646895e-01	k: 7160	n:20000
PDSS1   20000 perm   4 sec   (4751 perm/sec)   p_kst 3.580000e-01   p_cons 2.000000e-03   p_joint 2.525000e-02

Joint ci ratio: 1.379758e-01	ci left: 2.438964e-02	ci right 2.803623e-02	k: 785	n:30000
Cons ci ratio: 5.142149e-01	ci left: 1.439349e-03	ci right 2.460979e-03	k: 57	n:30000
KS ci ratio: 3.015878e-02	ci left: 3.547980e-01	ci right 3.656957e-01	k: 10807	n:30000
PDSS1   30000 perm   7 sec   (4524 perm/sec)   p_kst 3.602333e-01   p_cons 1.900000e-03   p_joint 2.616667e-02

Joint ci ratio: 1.338236e-01	ci left: 1.959304e-02	ci right 2.242710e-02	k: 839	n:40000
Cons ci ratio: 4.060072e-01	ci left: 1.854515e-03	ci right 2.820011e-03	k: 92	n:40000
KS ci ratio: 2.632301e-02	ci left: 3.519538e-01	ci right 3.613670e-01	k: 14266	n:40000
PDSS1   40000 perm   9 sec   (4380 perm/sec)   p_kst 3.566500e-01   p_cons 2.300000e-03   p_joint 2.097500e-02

Joint ci ratio: 1.149747e-01	ci left: 2.141223e-02	ci right 2.404359e-02	k: 1135	n:50000
Cons ci ratio: 3.574122e-01	ci left: 1.972016e-03	ci right 2.847358e-03	k: 119	n:50000
KS ci ratio: 2.347108e-02	ci left: 3.538760e-01	ci right 3.623005e-01	k: 17904	n:50000
PDSS1   50000 perm   12 sec   (4266 perm/sec)   p_kst 3.580800e-01   p_cons 2.380000e-03   p_joint 2.270000e-02

Joint ci ratio: 1.033473e-01	ci left: 2.220517e-02	ci right 2.464123e-02	k: 1404	n:60000
Cons ci ratio: 3.297327e-01	ci left: 1.963190e-03	ci right 2.752846e-03	k: 140	n:60000
KS ci ratio: 2.140666e-02	ci left: 3.546614e-01	ci right 3.623523e-01	k: 21510	n:60000
PDSS1   60000 perm   14 sec   (4165 perm/sec)   p_kst 3.585000e-01   p_cons 2.333333e-03   p_joint 2.340000e-02

Joint ci ratio: 9.188238e-02	ci left: 2.417719e-02	ci right 2.651953e-02	k: 1773	n:70000
Cons ci ratio: 3.038879e-01	ci left: 2.011533e-03	ci right 2.744978e-03	k: 165	n:70000
KS ci ratio: 1.984346e-02	ci left: 3.543761e-01	ci right 3.614929e-01	k: 25055	n:70000
PDSS1   70000 perm   17 sec   (4076 perm/sec)   p_kst 3.579286e-01   p_cons 2.357143e-03   p_joint 2.532857e-02

Joint ci ratio: 8.733774e-02	ci left: 2.348868e-02	ci right 2.564599e-02	k: 1964	n:80000
Cons ci ratio: 2.870922e-01	ci left: 1.991570e-03	ci right 2.670328e-03	k: 185	n:80000
KS ci ratio: 1.854946e-02	ci left: 3.549139e-01	ci right 3.615714e-01	k: 28659	n:80000
PDSS1   80000 perm   20 sec   (3998 perm/sec)   p_kst 3.582375e-01   p_cons 2.312500e-03   p_joint 2.455000e-02

Joint ci ratio: 7.354503e-02	ci left: 2.947346e-02	ci right 3.173471e-02	k: 2753	n:90000
Cons ci ratio: 2.894784e-01	ci left: 1.739327e-03	ci right 2.337941e-03	k: 182	n:90000
KS ci ratio: 1.748712e-02	ci left: 3.551442e-01	ci right 3.614205e-01	k: 32245	n:90000
PDSS1   90000 perm   23 sec   (3925 perm/sec)   p_kst 3.582778e-01   p_cons 2.022222e-03   p_joint 3.058889e-02

Joint ci ratio: 6.682058e-02	ci left: 3.215717e-02	ci right 3.439001e-02	k: 3326	n:100000
Cons ci ratio: 2.783050e-01	ci left: 1.704714e-03	ci right 2.264803e-03	k: 197	n:100000
KS ci ratio: 1.656663e-02	ci left: 3.559461e-01	ci right 3.619021e-01	k: 35892	n:100000
PDSS1   100000 perm   26 sec   (3854 perm/sec)   p_kst 3.589200e-01   p_cons 1.970000e-03   p_joint 3.326000e-02

Joint ci ratio: 7.122320e-02	ci left: 2.584464e-02	ci right 2.776224e-02	k: 2947	n:110000
Cons ci ratio: 2.646240e-01	ci left: 1.727666e-03	ci right 2.262773e-03	k: 218	n:110000
KS ci ratio: 1.579981e-02	ci left: 3.559647e-01	ci right 3.616427e-01	k: 39468	n:110000
PDSS1   110000 perm   29 sec   (3787 perm/sec)   p_kst 3.588000e-01   p_cons 1.981818e-03   p_joint 2.679091e-02

Joint ci ratio: 7.211145e-02	ci left: 2.316597e-02	ci right 2.490714e-02	k: 2883	n:120000
Cons ci ratio: 2.538427e-01	ci left: 1.731743e-03	ci right 2.242804e-03	k: 237	n:120000
KS ci ratio: 1.511405e-02	ci left: 3.564848e-01	ci right 3.619220e-01	k: 43104	n:120000
PDSS1   120000 perm   32 sec   (3713 perm/sec)   p_kst 3.592000e-01   p_cons 1.975000e-03   p_joint 2.402500e-02

Joint ci ratio: 6.858098e-02	ci left: 2.367396e-02	ci right 2.536272e-02	k: 3186	n:130000
Cons ci ratio: 2.442801e-01	ci left: 1.735567e-03	ci right 2.225536e-03	k: 256	n:130000
KS ci ratio: 1.450998e-02	ci left: 3.569446e-01	ci right 3.621694e-01	k: 46742	n:130000
PDSS1   130000 perm   36 sec   (3654 perm/sec)   p_kst 3.595538e-01   p_cons 1.969231e-03   p_joint 2.450769e-02

Joint ci ratio: 7.480812e-02	ci left: 1.851562e-02	ci right 1.996153e-02	k: 2692	n:140000
Cons ci ratio: 2.352960e-01	ci left: 1.745876e-03	ci right 2.217990e-03	k: 276	n:140000
KS ci ratio: 1.398468e-02	ci left: 3.569573e-01	ci right 3.619914e-01	k: 50326	n:140000
PDSS1   140000 perm   39 sec   (3597 perm/sec)   p_kst 3.594714e-01   p_cons 1.971429e-03   p_joint 1.922857e-02

Joint ci ratio: 7.184562e-02	ci left: 1.876037e-02	ci right 2.016496e-02	k: 2918	n:150000
Cons ci ratio: 2.249698e-01	ci left: 1.792834e-03	ci right 2.253422e-03	k: 302	n:150000
KS ci ratio: 1.352395e-02	ci left: 3.565851e-01	ci right 3.614470e-01	k: 53852	n:150000
PDSS1   150000 perm   42 sec   (3531 perm/sec)   p_kst 3.590133e-01   p_cons 2.013333e-03   p_joint 1.945333e-02

Joint ci ratio: 6.670986e-02	ci left: 2.041980e-02	ci right 2.183512e-02	k: 3379	n:160000
Cons ci ratio: 2.213540e-01	ci left: 1.739783e-03	ci right 2.178579e-03	k: 312	n:160000
KS ci ratio: 1.319094e-02	ci left: 3.532976e-01	ci right 3.579951e-01	k: 56903	n:160000
PDSS1   160000 perm   46 sec   (3479 perm/sec)   p_kst 3.556437e-01   p_cons 1.950000e-03   p_joint 2.111875e-02

Joint ci ratio: 6.723068e-02	ci left: 1.894631e-02	ci right 2.027015e-02	k: 3332	n:170000
Cons ci ratio: 2.123785e-01	ci left: 1.787647e-03	ci right 2.217855e-03	k: 339	n:170000
KS ci ratio: 1.278913e-02	ci left: 3.536529e-01	ci right 3.582108e-01	k: 60508	n:170000
PDSS1   170000 perm   50 sec   (3426 perm/sec)   p_kst 3.559294e-01   p_cons 1.994118e-03   p_joint 1.960000e-02

Joint ci ratio: 5.975506e-02	ci left: 2.265180e-02	ci right 2.405250e-02	k: 4202	n:180000
Cons ci ratio: 2.072620e-01	ci left: 1.777815e-03	ci right 2.194042e-03	k: 356	n:180000
KS ci ratio: 1.243699e-02	ci left: 3.534159e-01	ci right 3.578443e-01	k: 64013	n:180000
PDSS1   180000 perm   53 sec   (3375 perm/sec)   p_kst 3.556278e-01   p_cons 1.977778e-03   p_joint 2.334444e-02

Joint ci ratio: 5.699167e-02	ci left: 2.360189e-02	ci right 2.499162e-02	k: 4615	n:190000
Cons ci ratio: 2.022275e-01	ci left: 1.774126e-03	ci right 2.178154e-03	k: 374	n:190000
KS ci ratio: 1.209810e-02	ci left: 3.537467e-01	ci right 3.580577e-01	k: 67621	n:190000
PDSS1   190000 perm   57 sec   (3319 perm/sec)   p_kst 3.559000e-01   p_cons 1.968421e-03   p_joint 2.428947e-02

Joint ci ratio: 5.659565e-02	ci left: 2.276162e-02	ci right 2.409225e-02	k: 4684	n:200000
Cons ci ratio: 1.967918e-01	ci left: 1.785176e-03	ci right 2.179482e-03	k: 395	n:200000
KS ci ratio: 1.179936e-02	ci left: 3.535067e-01	ci right 3.577075e-01	k: 71121	n:200000
PDSS1   200000 perm   62 sec   (3244 perm/sec)   p_kst 3.556050e-01   p_cons 1.975000e-03   p_joint 2.342000e-02

Joint ci ratio: 5.667748e-02	ci left: 2.163982e-02	ci right 2.290675e-02	k: 4676	n:210000
Cons ci ratio: 1.929345e-01	ci left: 1.772640e-03	ci right 2.155602e-03	k: 411	n:210000
KS ci ratio: 1.151178e-02	ci left: 3.536854e-01	ci right 3.577852e-01	k: 74704	n:210000
PDSS1   210000 perm   66 sec   (3183 perm/sec)   p_kst 3.557333e-01   p_cons 1.957143e-03   p_joint 2.226667e-02

Joint ci ratio: 6.636953e-02	ci left: 1.509076e-02	ci right 1.613115e-02	k: 3433	n:220000
Cons ci ratio: 1.875474e-01	ci left: 1.795963e-03	ci right 2.171897e-03	k: 435	n:220000
KS ci ratio: 1.124682e-02	ci left: 3.537446e-01	ci right 3.577501e-01	k: 78264	n:220000
PDSS1   220000 perm   70 sec   (3135 perm/sec)   p_kst 3.557455e-01   p_cons 1.977273e-03   p_joint 1.560455e-02

Joint ci ratio: 6.258756e-02	ci left: 1.624443e-02	ci right 1.729823e-02	k: 3856	n:230000
Cons ci ratio: 1.835902e-01	ci left: 1.796649e-03	ci right 2.163909e-03	k: 454	n:230000
KS ci ratio: 1.099121e-02	ci left: 3.541384e-01	ci right 3.580566e-01	k: 81902	n:230000
PDSS1   230000 perm   76 sec   (3037 perm/sec)   p_kst 3.560957e-01   p_cons 1.973913e-03   p_joint 1.676522e-02

Joint ci ratio: 6.271730e-02	ci left: 1.551408e-02	ci right 1.652266e-02	k: 3843	n:240000
Cons ci ratio: 1.789302e-01	ci left: 1.817254e-03	ci right 2.178276e-03	k: 478	n:240000
KS ci ratio: 1.076106e-02	ci left: 3.541257e-01	ci right 3.579612e-01	k: 85450	n:240000
PDSS1   240000 perm   81 sec   (2961 perm/sec)   p_kst 3.560417e-01   p_cons 1.991667e-03   p_joint 1.601250e-02

Joint ci ratio: 6.314773e-02	ci left: 1.470041e-02	ci right 1.566288e-02	k: 3794	n:250000
Cons ci ratio: 1.765529e-01	ci left: 1.794248e-03	ci right 2.145459e-03	k: 491	n:250000
KS ci ratio: 1.054047e-02	ci left: 3.543025e-01	ci right 3.580608e-01	k: 89045	n:250000
PDSS1   250000 perm   86 sec   (2915 perm/sec)   p_kst 3.561800e-01   p_cons 1.964000e-03   p_joint 1.517600e-02

Joint ci ratio: 6.356710e-02	ci left: 1.395693e-02	ci right 1.487702e-02	k: 3747	n:260000
Cons ci ratio: 1.723967e-01	ci left: 1.813517e-03	ci right 2.159273e-03	k: 515	n:260000
KS ci ratio: 1.033316e-02	ci left: 3.544550e-01	ci right 3.581405e-01	k: 92637	n:260000
PDSS1   260000 perm   90 sec   (2884 perm/sec)   p_kst 3.562962e-01   p_cons 1.980769e-03   p_joint 1.441154e-02

Joint ci ratio: 6.353277e-02	ci left: 1.346177e-02	ci right 1.434871e-02	k: 3753	n:270000
Cons ci ratio: 1.694668e-01	ci left: 1.810164e-03	ci right 2.148817e-03	k: 533	n:270000
KS ci ratio: 1.014336e-02	ci left: 3.543379e-01	ci right 3.579541e-01	k: 96159	n:270000
PDSS1   270000 perm   95 sec   (2854 perm/sec)   p_kst 3.561444e-01   p_cons 1.974074e-03   p_joint 1.390000e-02

Joint ci ratio: 6.234766e-02	ci left: 1.348719e-02	ci right 1.435863e-02	k: 3897	n:280000
Cons ci ratio: 1.662294e-01	ci left: 1.817366e-03	ci right 2.150220e-03	k: 554	n:280000
KS ci ratio: 9.960853e-03	ci left: 3.543582e-01	ci right 3.579091e-01	k: 99717	n:280000
PDSS1   280000 perm   99 sec   (2824 perm/sec)   p_kst 3.561321e-01   p_cons 1.978571e-03   p_joint 1.391786e-02

Joint ci ratio: 5.499628e-02	ci left: 1.674351e-02	ci right 1.769376e-02	k: 4992	n:290000
Cons ci ratio: 1.620471e-01	ci left: 1.850593e-03	ci right 2.180175e-03	k: 583	n:290000
KS ci ratio: 9.789180e-03	ci left: 3.543156e-01	ci right 3.578045e-01	k: 103257	n:290000
PDSS1   290000 perm   104 sec   (2794 perm/sec)   p_kst 3.560586e-01   p_cons 2.010345e-03   p_joint 1.721379e-02

Joint ci ratio: 5.113411e-02	ci left: 1.872180e-02	ci right 1.970752e-02	k: 5763	n:300000
Cons ci ratio: 1.592096e-01	ci left: 1.856094e-03	ci right 2.180314e-03	k: 604	n:300000
KS ci ratio: 9.620002e-03	ci left: 3.545660e-01	ci right 3.579967e-01	k: 106884	n:300000
PDSS1   300000 perm   108 sec   (2766 perm/sec)   p_kst 3.562800e-01   p_cons 2.013333e-03   p_joint 1.921000e-02

Joint ci ratio: 4.975239e-02	ci left: 1.914359e-02	ci right 2.012349e-02	k: 6085	n:310000
Cons ci ratio: 1.562663e-01	ci left: 1.867485e-03	ci right 2.187100e-03	k: 627	n:310000
KS ci ratio: 9.468617e-03	ci left: 3.543497e-01	ci right 3.577240e-01	k: 110371	n:310000
PDSS1   310000 perm   113 sec   (2738 perm/sec)   p_kst 3.560355e-01   p_cons 2.022581e-03   p_joint 1.962903e-02

Joint ci ratio: 4.711059e-02	ci left: 2.067896e-02	ci right 2.167973e-02	k: 6776	n:320000
Cons ci ratio: 1.539550e-01	ci left: 1.866197e-03	ci right 2.180431e-03	k: 646	n:320000
KS ci ratio: 9.313998e-03	ci left: 3.546467e-01	ci right 3.579684e-01	k: 114018	n:320000
PDSS1   320000 perm   118 sec   (2710 perm/sec)   p_kst 3.563062e-01   p_cons 2.018750e-03   p_joint 2.117500e-02

Joint ci ratio: 4.639734e-02	ci left: 2.068125e-02	ci right 2.166657e-02	k: 6986	n:330000
Cons ci ratio: 1.516293e-01	ci left: 1.867935e-03	ci right 2.177278e-03	k: 666	n:330000
KS ci ratio: 9.170645e-03	ci left: 3.547294e-01	ci right 3.580004e-01	k: 117600	n:330000
PDSS1   330000 perm   123 sec   (2682 perm/sec)   p_kst 3.563636e-01   p_cons 2.018182e-03   p_joint 2.116970e-02

Joint ci ratio: 4.942143e-02	ci left: 1.771845e-02	ci right 1.861920e-02	k: 6176	n:340000
Cons ci ratio: 1.497339e-01	ci left: 1.861110e-03	ci right 2.165125e-03	k: 683	n:340000
KS ci ratio: 9.030356e-03	ci left: 3.549780e-01	ci right 3.582010e-01	k: 121240	n:340000
PDSS1   340000 perm   128 sec   (2655 perm/sec)   p_kst 3.565882e-01   p_cons 2.008824e-03   p_joint 1.816471e-02

Joint ci ratio: 4.917178e-02	ci left: 1.739557e-02	ci right 1.827530e-02	k: 6241	n:350000
Cons ci ratio: 1.474868e-01	ci left: 1.865704e-03	ci right 2.165494e-03	k: 704	n:350000
KS ci ratio: 8.901686e-03	ci left: 3.549358e-01	ci right 3.581123e-01	k: 124783	n:350000
PDSS1   350000 perm   133 sec   (2627 perm/sec)   p_kst 3.565229e-01   p_cons 2.011429e-03   p_joint 1.783143e-02

Joint ci ratio: 4.360550e-02	ci left: 2.147659e-02	ci right 2.243669e-02	k: 7903	n:360000
Cons ci ratio: 1.449383e-01	ci left: 1.880784e-03	ci right 2.177323e-03	k: 729	n:360000
KS ci ratio: 8.774751e-03	ci left: 3.550850e-01	ci right 3.582173e-01	k: 128394	n:360000
PDSS1   360000 perm   138 sec   (2600 perm/sec)   p_kst 3.566500e-01   p_cons 2.025000e-03   p_joint 2.195278e-02

Joint ci ratio: 4.683563e-02	ci left: 1.814571e-02	ci right 1.901861e-02	k: 6874	n:370000
Cons ci ratio: 1.430884e-01	ci left: 1.879453e-03	ci right 2.171677e-03	k: 748	n:370000
KS ci ratio: 8.652279e-03	ci left: 3.552697e-01	ci right 3.583596e-01	k: 132021	n:370000
PDSS1   370000 perm   144 sec   (2574 perm/sec)   p_kst 3.568135e-01   p_cons 2.021622e-03   p_joint 1.857838e-02

Joint ci ratio: 4.643625e-02	ci left: 1.798026e-02	ci right 1.883763e-02	k: 6994	n:380000
Cons ci ratio: 1.415850e-01	ci left: 1.870599e-03	ci right 2.158132e-03	k: 764	n:380000
KS ci ratio: 8.538563e-03	ci left: 3.552425e-01	ci right 3.582913e-01	k: 135571	n:380000
PDSS1   380000 perm   149 sec   (2548 perm/sec)   p_kst 3.567658e-01   p_cons 2.010526e-03   p_joint 1.840526e-02

Joint ci ratio: 4.644066e-02	ci left: 1.752420e-02	ci right 1.835990e-02	k: 6996	n:390000
Cons ci ratio: 1.395029e-01	ci left: 1.879536e-03	ci right 2.163841e-03	k: 787	n:390000
KS ci ratio: 8.427663e-03	ci left: 3.553014e-01	ci right 3.583110e-01	k: 139154	n:390000
PDSS1   390000 perm   155 sec   (2518 perm/sec)   p_kst 3.568051e-01   p_cons 2.017949e-03   p_joint 1.793846e-02

Joint ci ratio: 4.584155e-02	ci left: 1.754079e-02	ci right 1.836621e-02	k: 7180	n:400000
Cons ci ratio: 1.379368e-01	ci left: 1.875986e-03	ci right 2.156306e-03	k: 805	n:400000
KS ci ratio: 8.320113e-03	ci left: 3.554051e-01	ci right 3.583769e-01	k: 142756	n:400000
PDSS1   400000 perm   160 sec   (2493 perm/sec)   p_kst 3.568900e-01   p_cons 2.012500e-03   p_joint 1.795000e-02

Joint ci ratio: 4.546663e-02	ci left: 1.740228e-02	ci right 1.821431e-02	k: 7300	n:410000
Cons ci ratio: 1.362566e-01	ci left: 1.877338e-03	ci right 2.154166e-03	k: 825	n:410000
KS ci ratio: 8.216839e-03	ci left: 3.554894e-01	ci right 3.584248e-01	k: 146352	n:410000
PDSS1   410000 perm   166 sec   (2468 perm/sec)   p_kst 3.569561e-01   p_cons 2.012195e-03   p_joint 1.780488e-02

Joint ci ratio: 4.490399e-02	ci left: 1.742109e-02	ci right 1.822367e-02	k: 7484	n:420000
Cons ci ratio: 1.348762e-01	ci left: 1.871742e-03	ci right 2.144725e-03	k: 842	n:420000
KS ci ratio: 8.117782e-03	ci left: 3.555437e-01	ci right 3.584440e-01	k: 149937	n:420000
PDSS1   420000 perm   172 sec   (2444 perm/sec)   p_kst 3.569929e-01   p_cons 2.004762e-03   p_joint 1.781905e-02

Joint ci ratio: 4.428536e-02	ci left: 1.749889e-02	ci right 1.829367e-02	k: 7694	n:430000
Cons ci ratio: 1.324610e-01	ci left: 1.897897e-03	ci right 2.169348e-03	k: 873	n:430000
KS ci ratio: 8.023970e-03	ci left: 3.554957e-01	ci right 3.583620e-01	k: 153479	n:430000
PDSS1   430000 perm   178 sec   (2420 perm/sec)   p_kst 3.569279e-01   p_cons 2.030233e-03   p_joint 1.789302e-02

Joint ci ratio: 4.381877e-02	ci left: 1.747205e-02	ci right 1.825704e-02	k: 7859	n:440000
Cons ci ratio: 1.311918e-01	ci left: 1.892125e-03	ci right 2.159955e-03	k: 890	n:440000
KS ci ratio: 7.931805e-03	ci left: 3.555387e-01	ci right 3.583722e-01	k: 157060	n:440000
PDSS1   440000 perm   184 sec   (2394 perm/sec)   p_kst 3.569545e-01   p_cons 2.022727e-03   p_joint 1.786136e-02

Joint ci ratio: 4.338590e-02	ci left: 1.743106e-02	ci right 1.820628e-02	k: 8017	n:450000
Cons ci ratio: 1.301020e-01	ci left: 1.882321e-03	ci right 2.146379e-03	k: 905	n:450000
KS ci ratio: 7.847492e-03	ci left: 3.553024e-01	ci right 3.581038e-01	k: 160516	n:450000
PDSS1   450000 perm   190 sec   (2371 perm/sec)   p_kst 3.567022e-01   p_cons 2.011111e-03   p_joint 1.781556e-02

Joint ci ratio: 4.219706e-02	ci left: 1.802649e-02	ci right 1.880568e-02	k: 8470	n:460000
Cons ci ratio: 1.284117e-01	ci left: 1.891888e-03	ci right 2.153578e-03	k: 929	n:460000
KS ci ratio: 7.760991e-03	ci left: 3.553611e-01	ci right 3.581320e-01	k: 164103	n:460000
PDSS1   460000 perm   196 sec   (2348 perm/sec)   p_kst 3.567457e-01   p_cons 2.019565e-03   p_joint 1.841304e-02

Joint ci ratio: 4.175841e-02	ci left: 1.801980e-02	ci right 1.879041e-02	k: 8649	n:470000
Cons ci ratio: 1.274568e-01	ci left: 1.880469e-03	ci right 2.138498e-03	k: 943	n:470000
KS ci ratio: 7.680742e-03	ci left: 3.552113e-01	ci right 3.579522e-01	k: 167593	n:470000
PDSS1   470000 perm   202 sec   (2321 perm/sec)   p_kst 3.565809e-01   p_cons 2.006383e-03   p_joint 1.840213e-02

Joint ci ratio: 4.126417e-02	ci left: 1.807323e-02	ci right 1.883676e-02	k: 8857	n:480000
Cons ci ratio: 1.263248e-01	ci left: 1.875584e-03	ci right 2.130487e-03	k: 960	n:480000
KS ci ratio: 7.599306e-03	ci left: 3.552864e-01	ci right 3.579987e-01	k: 171188	n:480000
PDSS1   480000 perm   209 sec   (2299 perm/sec)   p_kst 3.566417e-01   p_cons 2.000000e-03   p_joint 1.845208e-02

Joint ci ratio: 4.086060e-02	ci left: 1.805988e-02	ci right 1.881522e-02	k: 9033	n:490000
Cons ci ratio: 1.256092e-01	ci left: 1.859048e-03	ci right 2.110165e-03	k: 971	n:490000
KS ci ratio: 7.521946e-03	ci left: 3.552648e-01	ci right 3.579492e-01	k: 174737	n:490000
PDSS1   490000 perm   215 sec   (2278 perm/sec)   p_kst 3.566061e-01   p_cons 1.981633e-03   p_joint 1.843469e-02

Joint ci ratio: 4.061716e-02	ci left: 1.791642e-02	ci right 1.866118e-02	k: 9143	n:500000
Cons ci ratio: 1.242111e-01	ci left: 1.864492e-03	ci right 2.113335e-03	k: 993	n:500000
KS ci ratio: 7.448751e-03	ci left: 3.551303e-01	ci right 3.577874e-01	k: 178229	n:500000
PDSS1   500000 perm   222 sec   (2257 perm/sec)   p_kst 3.564580e-01   p_cons 1.986000e-03   p_joint 1.828600e-02

Joint ci ratio: 4.027835e-02	ci left: 1.786595e-02	ci right 1.860228e-02	k: 9298	n:510000
Cons ci ratio: 1.230408e-01	ci left: 1.864036e-03	ci right 2.110304e-03	k: 1012	n:510000
KS ci ratio: 7.376201e-03	ci left: 3.550913e-01	ci right 3.577221e-01	k: 181767	n:510000
PDSS1   510000 perm   228 sec   (2236 perm/sec)   p_kst 3.564059e-01   p_cons 1.984314e-03   p_joint 1.823137e-02

Joint ci ratio: 4.048773e-02	ci left: 1.734905e-02	ci right 1.806788e-02	k: 9207	n:520000
Cons ci ratio: 1.223792e-01	ci left: 1.848693e-03	ci right 2.091525e-03	k: 1023	n:520000
KS ci ratio: 7.305424e-03	ci left: 3.550731e-01	ci right 3.576785e-01	k: 185315	n:520000
PDSS1   520000 perm   235 sec   (2216 perm/sec)   p_kst 3.563750e-01   p_cons 1.967308e-03   p_joint 1.770577e-02

Joint ci ratio: 4.008890e-02	ci left: 1.736538e-02	ci right 1.807764e-02	k: 9391	n:530000
Cons ci ratio: 1.208538e-01	ci left: 1.861377e-03	ci right 2.102609e-03	k: 1049	n:530000
KS ci ratio: 7.235248e-03	ci left: 3.551444e-01	ci right 3.577251e-01	k: 188910	n:530000
PDSS1   530000 perm   241 sec   (2196 perm/sec)   p_kst 3.564340e-01   p_cons 1.979245e-03   p_joint 1.771887e-02

Joint ci ratio: 3.911319e-02	ci left: 1.790382e-02	ci right 1.861988e-02	k: 9860	n:540000
Cons ci ratio: 1.200567e-01	ci left: 1.852051e-03	ci right 2.090380e-03	k: 1063	n:540000
KS ci ratio: 7.165407e-03	ci left: 3.553186e-01	ci right 3.578755e-01	k: 192562	n:540000
PDSS1   540000 perm   248 sec   (2176 perm/sec)   p_kst 3.565963e-01   p_cons 1.968519e-03   p_joint 1.825926e-02

Joint ci ratio: 3.873754e-02	ci left: 1.792399e-02	ci right 1.863382e-02	k: 10052	n:550000
Cons ci ratio: 1.189440e-01	ci left: 1.853654e-03	ci right 2.089823e-03	k: 1083	n:550000
KS ci ratio: 7.098758e-03	ci left: 3.554084e-01	ci right 3.579422e-01	k: 196171	n:550000
PDSS1   550000 perm   255 sec   (2156 perm/sec)   p_kst 3.566745e-01   p_cons 1.969091e-03   p_joint 1.827636e-02

Joint ci ratio: 3.893968e-02	ci left: 1.742876e-02	ci right 1.812267e-02	k: 9953	n:560000
Cons ci ratio: 1.181839e-01	ci left: 1.844811e-03	ci right 2.078246e-03	k: 1097	n:560000
KS ci ratio: 7.033907e-03	ci left: 3.554970e-01	ci right 3.580081e-01	k: 199781	n:560000
PDSS1   560000 perm   262 sec   (2137 perm/sec)   p_kst 3.567518e-01   p_cons 1.958929e-03   p_joint 1.777321e-02

Joint ci ratio: 3.876590e-02	ci left: 1.728107e-02	ci right 1.796595e-02	k: 10044	n:570000
Cons ci ratio: 1.169649e-01	ci left: 1.851611e-03	ci right 2.083322e-03	k: 1120	n:570000
KS ci ratio: 6.969789e-03	ci left: 3.556491e-01	ci right 3.581383e-01	k: 203429	n:570000
PDSS1   570000 perm   269 sec   (2118 perm/sec)   p_kst 3.568930e-01   p_cons 1.964912e-03   p_joint 1.762105e-02

Joint ci ratio: 3.749668e-02	ci left: 1.814792e-02	ci right 1.884311e-02	k: 10726	n:580000
Cons ci ratio: 1.161393e-01	ci left: 1.846468e-03	ci right 2.075793e-03	k: 1136	n:580000
KS ci ratio: 6.909676e-03	ci left: 3.556445e-01	ci right 3.581121e-01	k: 206989	n:580000
PDSS1   580000 perm   276 sec   (2099 perm/sec)   p_kst 3.568776e-01   p_cons 1.958621e-03   p_joint 1.849310e-02

Joint ci ratio: 3.751336e-02	ci left: 1.783020e-02	ci right 1.851352e-02	k: 10720	n:590000
Cons ci ratio: 1.152810e-01	ci left: 1.843152e-03	ci right 2.070258e-03	k: 1153	n:590000
KS ci ratio: 6.851066e-03	ci left: 3.556418e-01	ci right 3.580884e-01	k: 210550	n:590000
PDSS1   590000 perm   284 sec   (2081 perm/sec)   p_kst 3.568644e-01   p_cons 1.954237e-03   p_joint 1.816949e-02

Joint ci ratio: 3.638972e-02	ci left: 1.862796e-02	ci right 1.932003e-02	k: 11383	n:600000
Cons ci ratio: 1.143924e-01	ci left: 1.841571e-03	ci right 2.066615e-03	k: 1171	n:600000
KS ci ratio: 6.794688e-03	ci left: 3.555877e-01	ci right 3.580137e-01	k: 214080	n:600000
PDSS1   600000 perm   291 sec   (2063 perm/sec)   p_kst 3.568000e-01   p_cons 1.951667e-03   p_joint 1.897167e-02

Joint ci ratio: 3.314724e-02	ci left: 2.204148e-02	ci right 2.278602e-02	k: 13671	n:610000
Cons ci ratio: 1.135241e-01	ci left: 1.840048e-03	ci right 2.063085e-03	k: 1189	n:610000
KS ci ratio: 6.738595e-03	ci left: 3.556092e-01	ci right 3.580152e-01	k: 217655	n:610000
PDSS1   610000 perm   298 sec   (2044 perm/sec)   p_kst 3.568115e-01   p_cons 1.949180e-03   p_joint 2.241148e-02

Joint ci ratio: 3.285844e-02	ci left: 2.207148e-02	ci right 2.281041e-02	k: 13912	n:620000
Cons ci ratio: 1.124424e-01	ci left: 1.846419e-03	ci right 2.067954e-03	k: 1212	n:620000
KS ci ratio: 6.681827e-03	ci left: 3.557702e-01	ci right 3.581569e-01	k: 221317	n:620000
PDSS1   620000 perm   309 sec   (2008 perm/sec)   p_kst 3.569629e-01   p_cons 1.954839e-03   p_joint 2.243871e-02

Joint ci ratio: 3.258884e-02	ci left: 2.208481e-02	ci right 2.281801e-02	k: 14143	n:630000
Cons ci ratio: 1.119368e-01	ci left: 1.834080e-03	ci right 2.053080e-03	k: 1223	n:630000
KS ci ratio: 6.629287e-03	ci left: 3.557311e-01	ci right 3.580988e-01	k: 224856	n:630000
PDSS1   630000 perm   316 sec   (1992 perm/sec)   p_kst 3.569143e-01   p_cons 1.941270e-03   p_joint 2.244921e-02

Joint ci ratio: 3.241005e-02	ci left: 2.198458e-02	ci right 2.271038e-02	k: 14301	n:640000
Cons ci ratio: 1.109439e-01	ci left: 1.838840e-03	ci right 2.056333e-03	k: 1245	n:640000
KS ci ratio: 6.574587e-03	ci left: 3.559291e-01	ci right 3.582784e-01	k: 228546	n:640000
PDSS1   640000 perm   324 sec   (1976 perm/sec)   p_kst 3.571031e-01   p_cons 1.945312e-03   p_joint 2.234531e-02

Joint ci ratio: 3.136336e-02	ci left: 2.310103e-02	ci right 2.383861e-02	k: 15254	n:650000
Cons ci ratio: 1.098903e-01	ci left: 1.846453e-03	ci right 2.062639e-03	k: 1269	n:650000
KS ci ratio: 6.523753e-03	ci left: 3.559427e-01	ci right 3.582739e-01	k: 232120	n:650000
PDSS1   650000 perm   332 sec   (1960 perm/sec)   p_kst 3.571077e-01   p_cons 1.952308e-03   p_joint 2.346769e-02

Joint ci ratio: 3.113174e-02	ci left: 2.309377e-02	ci right 2.382557e-02	k: 15482	n:660000
Cons ci ratio: 1.089504e-01	ci left: 1.850898e-03	ci right 2.065632e-03	k: 1291	n:660000
KS ci ratio: 6.474208e-03	ci left: 3.559469e-01	ci right 3.582604e-01	k: 235688	n:660000
PDSS1   660000 perm   339 sec   (1945 perm/sec)   p_kst 3.571030e-01   p_cons 1.956061e-03   p_joint 2.345758e-02

Joint ci ratio: 3.085494e-02	ci left: 2.316081e-02	ci right 2.388810e-02	k: 15760	n:670000
Cons ci ratio: 1.080343e-01	ci left: 1.855218e-03	ci right 2.068528e-03	k: 1313	n:670000
KS ci ratio: 6.425336e-03	ci left: 3.559824e-01	ci right 3.582785e-01	k: 239277	n:670000
PDSS1   670000 perm   347 sec   (1929 perm/sec)   p_kst 3.571299e-01   p_cons 1.959701e-03   p_joint 2.352239e-02

Joint ci ratio: 3.045341e-02	ci left: 2.342441e-02	ci right 2.415024e-02	k: 16174	n:680000
Cons ci ratio: 1.071409e-01	ci left: 1.859418e-03	ci right 2.071332e-03	k: 1335	n:680000
KS ci ratio: 6.377024e-03	ci left: 3.560551e-01	ci right 3.583344e-01	k: 242892	n:680000
PDSS1   680000 perm   355 sec   (1914 perm/sec)   p_kst 3.571941e-01   p_cons 1.963235e-03   p_joint 2.378529e-02

Joint ci ratio: 3.024597e-02	ci left: 2.340566e-02	ci right 2.412588e-02	k: 16397	n:690000
Cons ci ratio: 1.063086e-01	ci left: 1.862092e-03	ci right 2.072559e-03	k: 1356	n:690000
KS ci ratio: 6.331043e-03	ci left: 3.560345e-01	ci right 3.582971e-01	k: 246444	n:690000
PDSS1   690000 perm   363 sec   (1899 perm/sec)   p_kst 3.571652e-01   p_cons 1.965217e-03   p_joint 2.376377e-02

Joint ci ratio: 3.066744e-02	ci left: 2.245868e-02	ci right 2.315956e-02	k: 15965	n:700000
Cons ci ratio: 1.056491e-01	ci left: 1.859133e-03	ci right 2.067880e-03	k: 1373	n:700000
KS ci ratio: 6.285300e-03	ci left: 3.560688e-01	ci right 3.583152e-01	k: 250034	n:700000
PDSS1   700000 perm   372 sec   (1884 perm/sec)   p_kst 3.571914e-01   p_cons 1.961429e-03   p_joint 2.280714e-02

Joint ci ratio: 2.963865e-02	ci left: 2.368859e-02	ci right 2.440263e-02	k: 17071	n:710000
Cons ci ratio: 1.048131e-01	ci left: 1.863118e-03	ci right 2.070556e-03	k: 1395	n:710000
KS ci ratio: 6.241147e-03	ci left: 3.560571e-01	ci right 3.582877e-01	k: 253592	n:710000
PDSS1   710000 perm   380 sec   (1869 perm/sec)   p_kst 3.571718e-01   p_cons 1.964789e-03   p_joint 2.404366e-02

Joint ci ratio: 3.009179e-02	ci left: 2.267979e-02	ci right 2.337406e-02	k: 16578	n:720000
Cons ci ratio: 1.040335e-01	ci left: 1.865647e-03	ci right 2.071727e-03	k: 1416	n:720000
KS ci ratio: 6.196431e-03	ci left: 3.561555e-01	ci right 3.583706e-01	k: 257229	n:720000
PDSS1   720000 perm   388 sec   (1854 perm/sec)   p_kst 3.572625e-01   p_cons 1.966667e-03   p_joint 2.302500e-02

Joint ci ratio: 2.990525e-02	ci left: 2.265190e-02	ci right 2.334094e-02	k: 16786	n:730000
Cons ci ratio: 1.032350e-01	ci left: 1.869446e-03	ci right 2.074264e-03	k: 1438	n:730000
KS ci ratio: 6.154443e-03	ci left: 3.561185e-01	ci right 3.583183e-01	k: 260769	n:730000
PDSS1   730000 perm   397 sec   (1840 perm/sec)   p_kst 3.572178e-01   p_cons 1.969863e-03   p_joint 2.299452e-02

Joint ci ratio: 2.972661e-02	ci left: 2.261806e-02	ci right 2.330189e-02	k: 16989	n:740000
Cons ci ratio: 1.026661e-01	ci left: 1.865248e-03	ci right 2.068412e-03	k: 1454	n:740000
KS ci ratio: 6.113728e-03	ci left: 3.560501e-01	ci right 3.582348e-01	k: 264285	n:740000
PDSS1   740000 perm   405 sec   (1826 perm/sec)   p_kst 3.571419e-01   p_cons 1.964865e-03   p_joint 2.295811e-02

Joint ci ratio: 2.965545e-02	ci left: 2.242895e-02	ci right 2.310541e-02	k: 17074	n:750000
Cons ci ratio: 1.020717e-01	ci left: 1.862464e-03	ci right 2.064080e-03	k: 1471	n:750000
KS ci ratio: 6.072841e-03	ci left: 3.560568e-01	ci right 3.582270e-01	k: 267856	n:750000
PDSS1   750000 perm   414 sec   (1812 perm/sec)   p_kst 3.571413e-01   p_cons 1.961333e-03   p_joint 2.276533e-02

Joint ci ratio: 2.954602e-02	ci left: 2.230229e-02	ci right 2.297241e-02	k: 17203	n:760000
Cons ci ratio: 1.015217e-01	ci left: 1.858474e-03	ci right 2.058510e-03	k: 1487	n:760000
KS ci ratio: 6.031536e-03	ci left: 3.561568e-01	ci right 3.583127e-01	k: 271498	n:760000
PDSS1   760000 perm   422 sec   (1799 perm/sec)   p_kst 3.572342e-01   p_cons 1.956579e-03   p_joint 2.263553e-02

Joint ci ratio: 2.940049e-02	ci left: 2.223437e-02	ci right 2.289910e-02	k: 17375	n:770000
Cons ci ratio: 1.009805e-01	ci left: 1.854591e-03	ci right 2.053082e-03	k: 1503	n:770000
KS ci ratio: 5.993502e-03	ci left: 3.560673e-01	ci right 3.582091e-01	k: 274996	n:770000
PDSS1   770000 perm   431 sec   (1785 perm/sec)   p_kst 3.571377e-01   p_cons 1.951948e-03   p_joint 2.256494e-02

Joint ci ratio: 2.919501e-02	ci left: 2.226112e-02	ci right 2.292192e-02	k: 17620	n:780000
Cons ci ratio: 1.003486e-01	ci left: 1.854560e-03	ci right 2.051732e-03	k: 1522	n:780000
KS ci ratio: 5.953735e-03	ci left: 3.561685e-01	ci right 3.582966e-01	k: 278641	n:780000
PDSS1   780000 perm   442 sec   (1763 perm/sec)   p_kst 3.572321e-01   p_cons 1.951282e-03   p_joint 2.258974e-02

Joint ci ratio: 2.898134e-02	ci left: 2.230606e-02	ci right 2.296327e-02	k: 17880	n:790000
Cons ci ratio: 9.976093e-02	ci left: 1.853299e-03	ci right 2.049116e-03	k: 1540	n:790000
KS ci ratio: 5.916574e-03	ci left: 3.561255e-01	ci right 3.582401e-01	k: 282174	n:790000
PDSS1   790000 perm   452 sec   (1747 perm/sec)   p_kst 3.571823e-01   p_cons 1.949367e-03   p_joint 2.263291e-02

Outputting figure to mutsig2_images.part000000000129/PDSS1.5_1296_790000_0.35718_0.0019494_0.022633.png
                gene_name: PDSS1
               theta_stop: 0.100 
                    nperm: 790000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.0019 
      ci_cons_bounds_left: 0.0019 
     ci_cons_bounds_right: 0.0020 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 30 percent done.
PEAR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.896174e-02	ci left: 8.025773e-01	ci right 8.180415e-01	k: 8104	n:10000
Cons ci ratio: 6.772759e-03	ci left: 9.676262e-01	ci right 9.742956e-01	k: 9711	n:10000
KS ci ratio: 2.729774e-02	ci left: 6.641089e-01	ci right 6.825900e-01	k: 6734	n:10000
PEAR1   10000 perm   2 sec   (4686 perm/sec)   p_kst 6.734000e-01   p_cons 9.711000e-01   p_joint 8.104000e-01

Outputting figure to mutsig2_images.part000000000129/PEAR1.5_3202_10000_0.6734_0.9711_0.8104.png
                gene_name: PEAR1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 32 percent done.
PET112L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.528286e-02	ci left: 6.971632e-01	ci right 7.151166e-01	k: 7062	n:10000
Cons ci ratio: 3.912365e-02	ci left: 4.910511e-01	ci right 5.107483e-01	k: 5009	n:10000
KS ci ratio: 2.788918e-02	ci left: 6.545449e-01	ci right 6.731595e-01	k: 6639	n:10000
PET112L   10000 perm   2 sec   (4960 perm/sec)   p_kst 6.639000e-01   p_cons 5.009000e-01   p_joint 7.062000e-01

Outputting figure to mutsig2_images.part000000000129/PET112L.5_1726_10000_0.6639_0.5009_0.7062.png
                gene_name: PET112L
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 35 percent done.
PEX12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.175049e-02	ci left: 5.941346e-01	ci right 6.134049e-01	k: 6038	n:10000
Cons ci ratio: 2.487530e-02	ci left: 7.039218e-01	ci right 7.217540e-01	k: 7129	n:10000
KS ci ratio: 4.054989e-02	ci left: 4.731620e-01	ci right 4.928479e-01	k: 4830	n:10000
PEX12   10000 perm   2 sec   (5636 perm/sec)   p_kst 4.830000e-01   p_cons 7.129000e-01   p_joint 6.038000e-01

Outputting figure to mutsig2_images.part000000000129/PEX12.5_1092_10000_0.483_0.7129_0.6038.png
                gene_name: PEX12
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 38 percent done.
PGBD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.002843e-02	ci left: 7.849243e-01	ci right 8.009047e-01	k: 7930	n:10000
Cons ci ratio: 4.189691e-02	ci left: 4.568828e-01	ci right 4.765366e-01	k: 4667	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
PGBD4   10000 perm   2 sec   (5345 perm/sec)   p_kst 1   p_cons 4.667000e-01   p_joint 7.930000e-01

Outputting figure to mutsig2_images.part000000000129/PGBD4.5_1762_10000_1_0.4667_0.793.png
                gene_name: PGBD4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 40 percent done.
PDYN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.472179e-02	ci left: 4.246552e-01	ci right 4.441830e-01	k: 4344	n:10000
Cons ci ratio: 6.563685e-02	ci left: 2.541932e-01	ci right 2.715451e-01	k: 2628	n:10000
KS ci ratio: 3.895970e-02	ci left: 4.931507e-01	ci right 5.128476e-01	k: 5030	n:10000
PDYN   10000 perm   2 sec   (6235 perm/sec)   p_kst 5.030000e-01   p_cons 2.628000e-01   p_joint 4.344000e-01

Outputting figure to mutsig2_images.part000000000129/PDYN.4_773_10000_0.503_0.2628_0.4344.png
                gene_name: PDYN
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 42 percent done.
PDZD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.135385e-02	ci left: 6.001585e-01	ci right 6.193775e-01	k: 6098	n:10000
Cons ci ratio: 2.550841e-02	ci left: 6.934318e-01	ci right 7.114501e-01	k: 7025	n:10000
KS ci ratio: 3.827998e-02	ci left: 5.019507e-01	ci right 5.216425e-01	k: 5118	n:10000
PDZD7   10000 perm   2 sec   (5741 perm/sec)   p_kst 5.118000e-01   p_cons 7.025000e-01   p_joint 6.098000e-01

Outputting figure to mutsig2_images.part000000000129/PDZD7.4_1590_10000_0.5118_0.7025_0.6098.png
                gene_name: PDZD7
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 45 percent done.
PELI3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.154273e-01	ci left: 9.740099e-02	ci right 1.094311e-01	k: 1033	n:10000
Cons ci ratio: 3.881972e-02	ci left: 4.949504e-01	ci right 5.146468e-01	k: 5048	n:10000
KS ci ratio: 1.910384e-01	ci left: 3.652992e-02	ci right 4.434069e-02	k: 403	n:10000
PELI3   10000 perm   2 sec   (5448 perm/sec)   p_kst 4.030000e-02   p_cons 5.048000e-01   p_joint 1.033000e-01

Joint ci ratio: 6.821791e-02	ci left: 1.368448e-01	ci right 1.465596e-01	k: 2833	n:20000
Cons ci ratio: 2.706729e-02	ci left: 5.048961e-01	ci right 5.188004e-01	k: 10237	n:20000
KS ci ratio: 1.358782e-01	ci left: 3.722952e-02	ci right 4.270526e-02	k: 798	n:20000
PELI3   20000 perm   4 sec   (4910 perm/sec)   p_kst 3.990000e-02   p_cons 5.118500e-01   p_joint 1.416500e-01

Joint ci ratio: 7.351613e-02	ci left: 8.337536e-02	ci right 8.977164e-02	k: 2596	n:30000
Cons ci ratio: 2.208099e-02	ci left: 5.066262e-01	ci right 5.179715e-01	k: 15369	n:30000
KS ci ratio: 1.107286e-01	ci left: 3.787542e-02	ci right 4.234753e-02	k: 1202	n:30000
PELI3   30000 perm   6 sec   (4691 perm/sec)   p_kst 4.006667e-02   p_cons 5.123000e-01   p_joint 8.653333e-02

Joint ci ratio: 5.560884e-02	ci left: 1.074188e-01	ci right 1.135879e-01	k: 4419	n:40000
Cons ci ratio: 1.926888e-02	ci left: 5.035878e-01	ci right 5.134109e-01	k: 20340	n:40000
KS ci ratio: 9.771721e-02	ci left: 3.678205e-02	ci right 4.058530e-02	k: 1546	n:40000
PELI3   40000 perm   9 sec   (4549 perm/sec)   p_kst 3.865000e-02   p_cons 5.085000e-01   p_joint 1.104750e-01

Outputting figure to mutsig2_images.part000000000129/PELI3.4_1438_40000_0.03865_0.5085_0.11048.png
                gene_name: PELI3
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 48 percent done.
PEX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.783066e-01	ci left: 4.197692e-02	ci right 5.029006e-02	k: 460	n:10000
Cons ci ratio: 2.264156e-01	ci left: 2.579881e-02	ci right 3.247924e-02	k: 290	n:10000
KS ci ratio: 5.546629e-02	ci left: 3.237627e-01	ci right 3.423347e-01	k: 3330	n:10000
PEX1   10000 perm   2 sec   (4697 perm/sec)   p_kst 3.330000e-01   p_cons 2.900000e-02   p_joint 4.600000e-02

Joint ci ratio: 1.177528e-01	ci left: 4.940061e-02	ci right 5.563030e-02	k: 1049	n:20000
Cons ci ratio: 1.675123e-01	ci left: 2.441395e-02	ci right 2.892508e-02	k: 532	n:20000
KS ci ratio: 3.921617e-02	ci left: 3.265676e-01	ci right 3.396810e-01	k: 6662	n:20000
PEX1   20000 perm   5 sec   (4209 perm/sec)   p_kst 3.331000e-01   p_cons 2.660000e-02   p_joint 5.245000e-02

Joint ci ratio: 8.174109e-02	ci left: 6.828229e-02	ci right 7.413441e-02	k: 2135	n:30000
Cons ci ratio: 1.382469e-01	ci left: 2.429301e-02	ci right 2.793288e-02	k: 782	n:30000
KS ci ratio: 3.208604e-02	ci left: 3.268700e-01	ci right 3.375625e-01	k: 9966	n:30000
PEX1   30000 perm   7 sec   (4025 perm/sec)   p_kst 3.322000e-01   p_cons 2.606667e-02   p_joint 7.116667e-02

Joint ci ratio: 6.379488e-02	ci left: 8.349184e-02	ci right 8.901840e-02	k: 3449	n:40000
Cons ci ratio: 1.141752e-01	ci left: 2.698836e-02	ci right 3.028054e-02	k: 1144	n:40000
KS ci ratio: 2.786946e-02	ci left: 3.262887e-01	ci right 3.355358e-01	k: 13236	n:40000
PEX1   40000 perm   10 sec   (3901 perm/sec)   p_kst 3.309000e-01   p_cons 2.860000e-02   p_joint 8.622500e-02

Joint ci ratio: 5.063912e-02	ci left: 1.043034e-01	ci right 1.097423e-01	k: 5350	n:50000
Cons ci ratio: 1.016202e-01	ci left: 2.742950e-02	ci right 3.038554e-02	k: 1444	n:50000
KS ci ratio: 2.480193e-02	ci left: 3.290084e-01	ci right 3.372910e-01	k: 16657	n:50000
PEX1   50000 perm   13 sec   (3806 perm/sec)   p_kst 3.331400e-01   p_cons 2.888000e-02   p_joint 1.070000e-01

Joint ci ratio: 5.110048e-02	ci left: 8.702973e-02	ci right 9.161009e-02	k: 5358	n:60000
Cons ci ratio: 9.307070e-02	ci left: 2.737855e-02	ci right 3.006729e-02	k: 1722	n:60000
KS ci ratio: 2.199872e-02	ci left: 3.422428e-01	ci right 3.498721e-01	k: 20763	n:60000
PEX1   60000 perm   16 sec   (3726 perm/sec)   p_kst 3.460500e-01   p_cons 2.870000e-02   p_joint 8.930000e-02

Outputting figure to mutsig2_images.part000000000129/PEX1.4_3948_60000_0.34605_0.0287_0.0893.png
                gene_name: PEX1
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.092 

Current progress: 50 percent done.
PEX5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.246431e-01	ci left: 8.436377e-02	ci right 9.567638e-02	k: 899	n:10000
Cons ci ratio: 4.067840e-01	ci left: 7.332900e-03	ci right 1.116119e-02	k: 91	n:10000
KS ci ratio: 2.652540e-02	ci left: 6.766995e-01	ci right 6.949921e-01	k: 6859	n:10000
PEX5L   10000 perm   2 sec   (5554 perm/sec)   p_kst 6.859000e-01   p_cons 9.100000e-03   p_joint 8.990000e-02

Joint ci ratio: 1.729211e-01	ci left: 2.288053e-02	ci right 2.725904e-02	k: 500	n:20000
Cons ci ratio: 2.892375e-01	ci left: 7.784307e-03	ci right 1.046133e-02	k: 181	n:20000
KS ci ratio: 1.878736e-02	ci left: 6.787118e-01	ci right 6.916343e-01	k: 13704	n:20000
PEX5L   20000 perm   4 sec   (4946 perm/sec)   p_kst 6.852000e-01   p_cons 9.050000e-03   p_joint 2.500000e-02

Joint ci ratio: 1.439147e-01	ci left: 2.239414e-02	ci right 2.589885e-02	k: 723	n:30000
Cons ci ratio: 2.434693e-01	ci left: 7.523634e-03	ci right 9.639855e-03	k: 256	n:30000
KS ci ratio: 1.538741e-02	ci left: 6.785709e-01	ci right 6.891268e-01	k: 20516	n:30000
PEX5L   30000 perm   6 sec   (4703 perm/sec)   p_kst 6.838667e-01   p_cons 8.533333e-03   p_joint 2.410000e-02

Joint ci ratio: 1.722973e-01	ci left: 1.167350e-02	ci right 1.389806e-02	k: 510	n:40000
Cons ci ratio: 2.095193e-01	ci left: 7.765825e-03	ci right 9.606568e-03	k: 346	n:40000
KS ci ratio: 1.331800e-02	ci left: 6.795437e-01	ci right 6.886796e-01	k: 27365	n:40000
PEX5L   40000 perm   9 sec   (4539 perm/sec)   p_kst 6.841250e-01   p_cons 8.650000e-03   p_joint 1.275000e-02

Joint ci ratio: 1.060478e-01	ci left: 2.518763e-02	ci right 2.802769e-02	k: 1329	n:50000
Cons ci ratio: 1.862664e-01	ci left: 7.961841e-03	ci right 9.615947e-03	k: 438	n:50000
KS ci ratio: 1.185432e-02	ci left: 6.821320e-01	ci right 6.902864e-01	k: 34311	n:50000
PEX5L   50000 perm   11 sec   (4419 perm/sec)   p_kst 6.862200e-01   p_cons 8.760000e-03   p_joint 2.658000e-02

Joint ci ratio: 8.440603e-02	ci left: 3.323345e-02	ci right 3.617844e-02	k: 2081	n:60000
Cons ci ratio: 1.698424e-01	ci left: 8.052238e-03	ci right 9.562516e-03	k: 527	n:60000
KS ci ratio: 1.081110e-02	ci left: 6.829044e-01	ci right 6.903442e-01	k: 41198	n:60000
PEX5L   60000 perm   14 sec   (4317 perm/sec)   p_kst 6.866333e-01   p_cons 8.783333e-03   p_joint 3.468333e-02

Joint ci ratio: 8.281556e-02	ci left: 2.972840e-02	ci right 3.231067e-02	k: 2170	n:70000
Cons ci ratio: 1.555957e-01	ci left: 8.286188e-03	ci right 9.697821e-03	k: 628	n:70000
KS ci ratio: 9.987999e-03	ci left: 6.840944e-01	ci right 6.909757e-01	k: 48128	n:70000
PEX5L   70000 perm   17 sec   (4223 perm/sec)   p_kst 6.875429e-01   p_cons 8.971429e-03   p_joint 3.100000e-02

Joint ci ratio: 7.852058e-02	ci left: 2.902491e-02	ci right 3.140932e-02	k: 2416	n:80000
Cons ci ratio: 1.470882e-01	ci left: 8.152388e-03	ci right 9.458607e-03	k: 703	n:80000
KS ci ratio: 9.337337e-03	ci left: 6.845759e-01	ci right 6.910105e-01	k: 55024	n:80000
PEX5L   80000 perm   19 sec   (4135 perm/sec)   p_kst 6.878000e-01   p_cons 8.787500e-03   p_joint 3.020000e-02

Joint ci ratio: 7.152069e-02	ci left: 3.114358e-02	ci right 3.346448e-02	k: 2906	n:90000
Cons ci ratio: 1.388531e-01	ci left: 8.167964e-03	ci right 9.397344e-03	k: 789	n:90000
KS ci ratio: 8.796274e-03	ci left: 6.851063e-01	ci right 6.911704e-01	k: 61933	n:90000
PEX5L   90000 perm   22 sec   (4056 perm/sec)   p_kst 6.881444e-01   p_cons 8.766667e-03   p_joint 3.228889e-02

Joint ci ratio: 6.863393e-02	ci left: 3.050471e-02	ci right 3.268257e-02	k: 3158	n:100000
Cons ci ratio: 1.313341e-01	ci left: 8.249774e-03	ci right 9.418982e-03	k: 882	n:100000
KS ci ratio: 8.340110e-03	ci left: 6.855090e-01	ci right 6.912601e-01	k: 68839	n:100000
PEX5L   100000 perm   25 sec   (3979 perm/sec)   p_kst 6.883900e-01   p_cons 8.820000e-03   p_joint 3.158000e-02

Joint ci ratio: 6.485346e-02	ci left: 3.110195e-02	ci right 3.319554e-02	k: 3535	n:110000
Cons ci ratio: 1.240233e-01	ci left: 8.441521e-03	ci right 9.566413e-03	k: 989	n:110000
KS ci ratio: 7.959554e-03	ci left: 6.852344e-01	ci right 6.907194e-01	k: 75678	n:110000
PEX5L   110000 perm   28 sec   (3909 perm/sec)   p_kst 6.879818e-01   p_cons 8.990909e-03   p_joint 3.213636e-02

Joint ci ratio: 6.302229e-02	ci left: 3.024812e-02	ci right 3.222462e-02	k: 3747	n:120000
Cons ci ratio: 1.184119e-01	ci left: 8.513829e-03	ci right 9.593430e-03	k: 1085	n:120000
KS ci ratio: 7.624663e-03	ci left: 6.851277e-01	ci right 6.903799e-01	k: 82531	n:120000
PEX5L   120000 perm   31 sec   (3840 perm/sec)   p_kst 6.877583e-01   p_cons 9.041667e-03   p_joint 3.122500e-02

Joint ci ratio: 6.047561e-02	ci left: 3.036007e-02	ci right 3.226091e-02	k: 4069	n:130000
Cons ci ratio: 1.139867e-01	ci left: 8.501229e-03	ci right 9.536234e-03	k: 1171	n:130000
KS ci ratio: 7.326669e-03	ci left: 6.851651e-01	ci right 6.902112e-01	k: 89400	n:130000
PEX5L   130000 perm   34 sec   (3774 perm/sec)   p_kst 6.876923e-01   p_cons 9.007692e-03   p_joint 3.130000e-02

Joint ci ratio: 5.879060e-02	ci left: 2.987296e-02	ci right 3.168940e-02	k: 4308	n:140000
Cons ci ratio: 1.105118e-01	ci left: 8.414652e-03	ci right 9.405849e-03	k: 1246	n:140000
KS ci ratio: 7.058739e-03	ci left: 6.853437e-01	ci right 6.902056e-01	k: 96289	n:140000
PEX5L   140000 perm   38 sec   (3703 perm/sec)   p_kst 6.877786e-01   p_cons 8.900000e-03   p_joint 3.077143e-02

Joint ci ratio: 5.724505e-02	ci left: 2.944488e-02	ci right 3.118667e-02	k: 4546	n:150000
Cons ci ratio: 1.067674e-01	ci left: 8.430891e-03	ci right 9.388237e-03	k: 1335	n:150000
KS ci ratio: 6.825086e-03	ci left: 6.850672e-01	ci right 6.897655e-01	k: 103113	n:150000
PEX5L   150000 perm   41 sec   (3632 perm/sec)   p_kst 6.874200e-01   p_cons 8.900000e-03   p_joint 3.030667e-02

Joint ci ratio: 4.377871e-02	ci left: 4.667313e-02	ci right 4.876830e-02	k: 7634	n:160000
Cons ci ratio: 1.033064e-01	ci left: 8.457776e-03	ci right 9.385151e-03	k: 1426	n:160000
KS ci ratio: 6.607613e-03	ci left: 6.851910e-01	ci right 6.897397e-01	k: 109995	n:160000
PEX5L   160000 perm   45 sec   (3575 perm/sec)   p_kst 6.874687e-01   p_cons 8.912500e-03   p_joint 4.771250e-02

Joint ci ratio: 4.062562e-02	ci left: 5.086771e-02	ci right 5.298289e-02	k: 8826	n:170000
Cons ci ratio: 1.000287e-01	ci left: 8.504885e-03	ci right 9.406099e-03	k: 1521	n:170000
KS ci ratio: 6.475408e-03	ci left: 6.808940e-01	ci right 6.853232e-01	k: 116129	n:170000
PEX5L   170000 perm   48 sec   (3512 perm/sec)   p_kst 6.831118e-01   p_cons 8.947059e-03   p_joint 5.191765e-02

Joint ci ratio: 4.231316e-02	ci left: 4.454732e-02	ci right 4.647847e-02	k: 8191	n:180000
Cons ci ratio: 9.777925e-02	ci left: 8.417059e-03	ci right 9.287759e-03	k: 1592	n:180000
KS ci ratio: 6.289100e-03	ci left: 6.812232e-01	ci right 6.855265e-01	k: 123008	n:180000
PEX5L   180000 perm   52 sec   (3458 perm/sec)   p_kst 6.833778e-01   p_cons 8.844444e-03   p_joint 4.550556e-02

Outputting figure to mutsig2_images.part000000000129/PEX5L.4_1941_180000_0.68338_0.0088444_0.045506.png
                gene_name: PEX5L
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.0088 
      ci_cons_bounds_left: 0.0084 
     ci_cons_bounds_right: 0.0093 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.046 

Current progress: 52 percent done.
PFKM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.113958e-03	ci left: 9.645717e-01	ci right 9.715522e-01	k: 9682	n:10000
KS ci ratio: 2.913638e-02	ci left: 6.346251e-01	ci right 6.534909e-01	k: 6441	n:10000
PFKM   10000 perm   2 sec   (5285 perm/sec)   p_kst 6.441000e-01   p_cons 9.682000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PFKM.4_2652_10000_0.6441_0.9682_1.png
                gene_name: PFKM
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
PDZD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.405012e-02	ci left: 5.601272e-01	ci right 5.796320e-01	k: 5699	n:10000
Cons ci ratio: 4.246508e-02	ci left: 4.501944e-01	ci right 4.698289e-01	k: 4600	n:10000
KS ci ratio: 2.457788e-02	ci left: 7.088662e-01	ci right 7.266068e-01	k: 7178	n:10000
PDZD11   10000 perm   2 sec   (6398 perm/sec)   p_kst 7.178000e-01   p_cons 4.600000e-01   p_joint 5.699000e-01

Outputting figure to mutsig2_images.part000000000129/PDZD11.3_447_10000_0.7178_0.46_0.5699.png
                gene_name: PDZD11
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 57 percent done.
PEX26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.955702e-02	ci left: 6.279891e-01	ci right 6.469308e-01	k: 6375	n:10000
KS ci ratio: 2.658696e-02	ci left: 6.756920e-01	ci right 6.940002e-01	k: 6849	n:10000
PEX26   10000 perm   2 sec   (6401 perm/sec)   p_kst 6.849000e-01   p_cons 6.375000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PEX26.3_938_10000_0.6849_0.6375_1.png
                gene_name: PEX26
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
PEX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.974606e-02	ci left: 1.867820e-01	ci right 2.023963e-01	k: 1945	n:10000
Cons ci ratio: 1.519441e-01	ci left: 5.764078e-02	ci right 6.721608e-02	k: 623	n:10000
KS ci ratio: 4.796083e-02	ci left: 3.907768e-01	ci right 4.100813e-01	k: 4004	n:10000
PEX5   10000 perm   2 sec   (5731 perm/sec)   p_kst 4.004000e-01   p_cons 6.230000e-02   p_joint 1.945000e-01

Joint ci ratio: 6.564803e-02	ci left: 1.463104e-01	ci right 1.562912e-01	k: 3025	n:20000
Cons ci ratio: 1.056925e-01	ci left: 6.093909e-02	ci right 6.778824e-02	k: 1286	n:20000
KS ci ratio: 3.390255e-02	ci left: 3.937987e-01	ci right 4.074303e-01	k: 8012	n:20000
PEX5   20000 perm   4 sec   (5060 perm/sec)   p_kst 4.006000e-01   p_cons 6.430000e-02   p_joint 1.512500e-01

Joint ci ratio: 4.844180e-02	ci left: 1.748087e-01	ci right 1.835202e-01	k: 5374	n:30000
Cons ci ratio: 8.655001e-02	ci left: 6.122341e-02	ci right 6.679473e-02	k: 1919	n:30000
KS ci ratio: 2.762465e-02	ci left: 3.960458e-01	ci right 4.071733e-01	k: 12048	n:30000
PEX5   30000 perm   6 sec   (4795 perm/sec)   p_kst 4.016000e-01   p_cons 6.396667e-02   p_joint 1.791333e-01

Outputting figure to mutsig2_images.part000000000129/PEX5.3_2025_30000_0.4016_0.063967_0.17913.png
                gene_name: PEX5
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 62 percent done.
PGA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.516850e-01	ci left: 5.783363e-02	ci right 6.742310e-02	k: 625	n:10000
Cons ci ratio: 7.285505e-02	ci left: 2.162545e-01	ci right 2.327063e-01	k: 2244	n:10000
KS ci ratio: 1.996961e-01	ci left: 3.338573e-02	ci right 4.088702e-02	k: 370	n:10000
PGA5   10000 perm   2 sec   (6273 perm/sec)   p_kst 3.700000e-02   p_cons 2.244000e-01   p_joint 6.250000e-02

Joint ci ratio: 1.437437e-01	ci left: 3.326778e-02	ci right 3.846828e-02	k: 716	n:20000
Cons ci ratio: 5.131792e-02	ci left: 2.200206e-01	ci right 2.316592e-01	k: 4516	n:20000
KS ci ratio: 1.392719e-01	ci left: 3.544087e-02	ci right 4.079449e-02	k: 761	n:20000
PGA5   20000 perm   4 sec   (5461 perm/sec)   p_kst 3.805000e-02   p_cons 2.258000e-01   p_joint 3.580000e-02

Joint ci ratio: 9.248383e-02	ci left: 5.388111e-02	ci right 5.913852e-02	k: 1694	n:30000
Cons ci ratio: 4.163325e-02	ci left: 2.233285e-01	ci right 2.328575e-01	k: 6842	n:30000
KS ci ratio: 1.138714e-01	ci left: 3.583221e-02	ci right 4.019118e-02	k: 1139	n:30000
PGA5   30000 perm   6 sec   (5155 perm/sec)   p_kst 3.796667e-02   p_cons 2.280667e-01   p_joint 5.646667e-02

Joint ci ratio: 1.083244e-01	ci left: 2.998029e-02	ci right 3.343813e-02	k: 1267	n:40000
Cons ci ratio: 3.611706e-02	ci left: 2.233743e-01	ci right 2.316153e-01	k: 9099	n:40000
KS ci ratio: 9.858217e-02	ci left: 3.614741e-02	ci right 3.992003e-02	k: 1520	n:40000
PGA5   40000 perm   8 sec   (4928 perm/sec)   p_kst 3.800000e-02   p_cons 2.274750e-01   p_joint 3.167500e-02

Joint ci ratio: 7.970777e-02	ci left: 4.429793e-02	ci right 4.799499e-02	k: 2306	n:50000
Cons ci ratio: 3.248717e-02	ci left: 2.218429e-01	ci right 2.291890e-01	k: 11275	n:50000
KS ci ratio: 8.789283e-02	ci left: 3.657590e-02	ci right 3.995798e-02	k: 1912	n:50000
PGA5   50000 perm   10 sec   (4782 perm/sec)   p_kst 3.824000e-02   p_cons 2.255000e-01   p_joint 4.612000e-02

Outputting figure to mutsig2_images.part000000000129/PGA5.3_1203_50000_0.03824_0.2255_0.04612.png
                gene_name: PGA5
               theta_stop: 0.088 
                    nperm: 50000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.048 

Current progress: 65 percent done.
PGAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.196988e-02	ci left: 5.908220e-01	ci right 6.101194e-01	k: 6005	n:10000
KS ci ratio: 3.746117e-02	ci left: 5.127548e-01	ci right 5.324320e-01	k: 5226	n:10000
PGAM1   10000 perm   1 sec   (6956 perm/sec)   p_kst 5.226000e-01   p_cons 6.005000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PGAM1.3_781_10000_0.5226_0.6005_1.png
                gene_name: PGAM1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
PGAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.110775e-02	ci left: 3.608245e-01	ci right 3.798511e-01	k: 3703	n:10000
Cons ci ratio: 2.849757e-02	ci left: 6.447840e-01	ci right 6.635261e-01	k: 6542	n:10000
KS ci ratio: 1.140784e-01	ci left: 9.954457e-02	ci right 1.116863e-01	k: 1055	n:10000
PGAP2   10000 perm   2 sec   (6273 perm/sec)   p_kst 1.055000e-01   p_cons 6.542000e-01   p_joint 3.703000e-01

Joint ci ratio: 5.113517e-02	ci left: 2.212591e-01	ci right 2.329203e-01	k: 4541	n:20000
Cons ci ratio: 2.079252e-02	ci left: 6.332023e-01	ci right 6.465570e-01	k: 12798	n:20000
KS ci ratio: 8.036964e-02	ci left: 1.020117e-01	ci right 1.106031e-01	k: 2125	n:20000
PGAP2   20000 perm   4 sec   (5471 perm/sec)   p_kst 1.062500e-01   p_cons 6.399000e-01   p_joint 2.270500e-01

Outputting figure to mutsig2_images.part000000000129/PGAP2.3_1151_20000_0.10625_0.6399_0.22705.png
                gene_name: PGAP2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 70 percent done.
PGAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.542450e-02	ci left: 5.405866e-01	ci right 5.601840e-01	k: 5504	n:10000
Cons ci ratio: 4.093336e-02	ci left: 4.684669e-01	ci right 4.881457e-01	k: 4783	n:10000
KS ci ratio: 4.307694e-02	ci left: 4.431087e-01	ci right 4.627188e-01	k: 4529	n:10000
PGAP3   10000 perm   2 sec   (6347 perm/sec)   p_kst 4.529000e-01   p_cons 4.783000e-01   p_joint 5.504000e-01

Outputting figure to mutsig2_images.part000000000129/PGAP3.3_995_10000_0.4529_0.4783_0.5504.png
                gene_name: PGAP3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 72 percent done.
PDSS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.073996e-02	ci left: 7.730669e-01	ci right 7.893690e-01	k: 7813	n:10000
Cons ci ratio: 7.700481e-02	ci left: 1.978142e-01	ci right 2.137576e-01	k: 2057	n:10000
KS ci ratio: 6.392025e-02	ci left: 2.644834e-01	ci right 2.820489e-01	k: 2732	n:10000
PDSS2   10000 perm   2 sec   (6379 perm/sec)   p_kst 2.732000e-01   p_cons 2.057000e-01   p_joint 7.813000e-01

Outputting figure to mutsig2_images.part000000000129/PDSS2.2_1232_10000_0.2732_0.2057_0.7813.png
                gene_name: PDSS2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 75 percent done.
PECAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.703178e-03	ci left: 9.487722e-01	ci right 9.571614e-01	k: 9531	n:10000
Cons ci ratio: 2.061251e-02	ci left: 7.751944e-01	ci right 7.914402e-01	k: 7834	n:10000
KS ci ratio: 3.802803e-02	ci left: 5.052515e-01	ci right 5.249398e-01	k: 5151	n:10000
PECAM1   10000 perm   2 sec   (6139 perm/sec)   p_kst 5.151000e-01   p_cons 7.834000e-01   p_joint 9.531000e-01

Outputting figure to mutsig2_images.part000000000129/PECAM1.2_2004_10000_0.5151_0.7834_0.9531.png
                gene_name: PECAM1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 78 percent done.
PELI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.331365e-02	ci left: 7.299703e-01	ci right 7.472905e-01	k: 7387	n:10000
KS ci ratio: 5.688161e-02	ci left: 3.127459e-01	ci right 3.311579e-01	k: 3219	n:10000
PELI1   10000 perm   2 sec   (6326 perm/sec)   p_kst 3.219000e-01   p_cons 7.387000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PELI1.2_1281_10000_0.3219_0.7387_1.png
                gene_name: PELI1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
PELP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.470749e-02	ci left: 5.507057e-01	ci right 5.702590e-01	k: 5605	n:10000
Cons ci ratio: 4.100724e-02	ci left: 4.675680e-01	ci right 4.872452e-01	k: 4774	n:10000
KS ci ratio: 6.524960e-02	ci left: 2.564684e-01	ci right 2.738686e-01	k: 2651	n:10000
PELP1   10000 perm   2 sec   (5151 perm/sec)   p_kst 2.651000e-01   p_cons 4.774000e-01   p_joint 5.605000e-01

Outputting figure to mutsig2_images.part000000000129/PELP1.2_3461_10000_0.2651_0.4774_0.5605.png
                gene_name: PELP1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 82 percent done.
PER2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.568287e-02	ci left: 5.369808e-01	ci right 5.565920e-01	k: 5468	n:10000
Cons ci ratio: 6.491644e-02	ci left: 2.584471e-01	ci right 2.758888e-01	k: 2671	n:10000
KS ci ratio: 5.812920e-02	ci left: 3.034210e-01	ci right 3.216883e-01	k: 3125	n:10000
PER2   10000 perm   2 sec   (5062 perm/sec)   p_kst 3.125000e-01   p_cons 2.671000e-01   p_joint 5.468000e-01

Outputting figure to mutsig2_images.part000000000129/PER2.2_3856_10000_0.3125_0.2671_0.5468.png
                gene_name: PER2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 85 percent done.
PEX11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.405748e-02	ci left: 8.797106e-01	ci right 8.922635e-01	k: 8861	n:10000
KS ci ratio: 1.808054e-02	ci left: 8.170019e-01	ci right 8.320086e-01	k: 8246	n:10000
PEX11A   10000 perm   1 sec   (6676 perm/sec)   p_kst 8.246000e-01   p_cons 8.861000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PEX11A.2_756_10000_0.8246_0.8861_1.png
                gene_name: PEX11A
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
PEX11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.716943e-02	ci left: 3.105631e-01	ci right 3.289420e-01	k: 3197	n:10000
Cons ci ratio: 7.733613e-02	ci left: 1.964346e-01	ci right 2.123380e-01	k: 2043	n:10000
KS ci ratio: 2.001624e-02	ci left: 7.851271e-01	ci right 8.011018e-01	k: 7932	n:10000
PEX11B   10000 perm   1 sec   (6672 perm/sec)   p_kst 7.932000e-01   p_cons 2.043000e-01   p_joint 3.197000e-01

Outputting figure to mutsig2_images.part000000000129/PEX11B.2_814_10000_0.7932_0.2043_0.3197.png
                gene_name: PEX11B
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 90 percent done.
PEX14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.691387e-02	ci left: 2.468751e-01	ci right 2.640676e-01	k: 2554	n:10000
Cons ci ratio: 7.743137e-02	ci left: 1.960405e-01	ci right 2.119323e-01	k: 2039	n:10000
KS ci ratio: 1.193266e-01	ci left: 9.155922e-02	ci right 1.032765e-01	k: 973	n:10000
PEX14   10000 perm   2 sec   (6452 perm/sec)   p_kst 9.730000e-02   p_cons 2.039000e-01   p_joint 2.554000e-01

Joint ci ratio: 3.502960e-02	ci left: 3.782484e-01	ci right 3.917851e-01	k: 7700	n:20000
Cons ci ratio: 6.013080e-02	ci left: 1.699541e-01	ci right 1.805404e-01	k: 3504	n:20000
KS ci ratio: 8.437829e-02	ci left: 9.327545e-02	ci right 1.015420e-01	k: 1947	n:20000
PEX14   20000 perm   4 sec   (5557 perm/sec)   p_kst 9.735000e-02   p_cons 1.752000e-01   p_joint 3.850000e-01

Outputting figure to mutsig2_images.part000000000129/PEX14.2_1170_20000_0.09735_0.1752_0.385.png
                gene_name: PEX14
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 92 percent done.
PEX19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.226974e-02	ci left: 7.474583e-01	ci right 7.643924e-01	k: 7560	n:10000
KS ci ratio: 3.318984e-02	ci left: 5.726613e-01	ci right 5.920907e-01	k: 5824	n:10000
PEX19   10000 perm   2 sec   (6595 perm/sec)   p_kst 5.824000e-01   p_cons 7.560000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PEX19.2_932_10000_0.5824_0.756_1.png
                gene_name: PEX19
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
PFKFB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.471135e-02	ci left: 7.066461e-01	ci right 7.244281e-01	k: 7156	n:10000
Cons ci ratio: 3.377316e-02	ci left: 5.641375e-01	ci right 5.836195e-01	k: 5739	n:10000
KS ci ratio: 2.884472e-02	ci left: 6.392513e-01	ci right 6.580620e-01	k: 6487	n:10000
PFKFB4   10000 perm   2 sec   (6142 perm/sec)   p_kst 6.487000e-01   p_cons 5.739000e-01   p_joint 7.156000e-01

Outputting figure to mutsig2_images.part000000000129/PFKFB4.2_1466_10000_0.6487_0.5739_0.7156.png
                gene_name: PFKFB4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 98 percent done.
PFKP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.857854e-02	ci left: 3.001484e-01	ci right 3.183629e-01	k: 3092	n:10000
KS ci ratio: 3.103201e-02	ci left: 6.050792e-01	ci right 6.242539e-01	k: 6147	n:10000
PFKP   10000 perm   2 sec   (5804 perm/sec)   p_kst 6.147000e-01   p_cons 3.092000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000129/PFKP.2_2443_10000_0.6147_0.3092_1.png
                gene_name: PFKP
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000129
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 129 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1649>
Subject: Job 9894077: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1649>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000130> was used as the working directory.
Started at Sat Oct  6 00:24:33 2012
Results reported at Sat Oct  6 00:34:32 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000130.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000130.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 130  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000130.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    622.54 sec.
    Max Memory :      3551 MB
    Max Swap   :      5961 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
130
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 130
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 130: processing genes 11630 - 11720
Calculating significance of each gene.
Using projection method.
11630	PGBD5	1.179108e-01
11631	PGC	9.836430e-02
11632	PGCP	2.512936e-01
11633	PGD	9.376799e-01
11634	PGF	2.027806e-01
11635	PGGT1B	3.839768e-01
11636	PGK1	6.757310e-02
11637	PGK2	3.181714e-02
11638	PGLS	1
11639	PGLYRP1	7.689196e-02
11640	PGLYRP2	9.505868e-01
11641	PGLYRP3	5.866810e-01
11642	PGLYRP4	1.679760e-01
11643	PGM1	3.232713e-01
11644	PGM2	1
11645	PGM2L1	9.292806e-01
11646	PGM3	2.060230e-01
11647	PGM5	7.874339e-02
11648	PGP	1
11649	PGPEP1	1
11650	PGPEP1L	1.868482e-01
11651	PGR	6.548310e-01
11652	PGRMC1	1
11653	PGRMC2	1
11654	PGS1	7.635651e-01
11655	PHACTR1	9.114598e-01
11656	PHACTR2	7.494512e-01
11657	PHACTR3	1.007668e-01
11658	PHACTR4	7.156762e-01
11659	PHAX	8.225366e-01
11660	PHB	4.542802e-01
11661	PHB2	1
11662	PHC1	5.452339e-01
11663	PHC2	2.662711e-01
11664	PHC3	9.468073e-01
11665	PHEX	1.239584e-02
11666	PHF1	7.961335e-01
11667	PHF10	5.993182e-01
11668	PHF11	3.780017e-01
11669	PHF12	9.703257e-01
11670	PHF13	1
11671	PHF14	4.825846e-01
11672	PHF15	7.594080e-01
11673	PHF16	6.724669e-01
11674	PHF17	4.554402e-02
11675	PHF19	8.386905e-01
11676	PHF2	7.354660e-01
11677	PHF20	7.934662e-01
11678	PHF20L1	3.234953e-01
11679	PHF21A	2.855255e-01
11680	PHF21B	1
11681	PHF23	3.013036e-01
11682	PHF3	4.418141e-01
11683	PHF5A	1.966120e-01
11684	PHF6	6.576897e-01
11685	PHF7	2.392459e-02
11686	PHF8	6.452491e-01
11687	PHGDH	6.968918e-01
In gene PHIP the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 5485    n = 1	mu =   7.59e-07
11688	PHIP	5.210992e-01
11689	PHKA1	5.162338e-01
11690	PHKA2	7.536658e-01
11691	PHKB	3.976108e-01
11692	PHKG1	1
11693	PHKG2	2.585133e-01
11694	PHLDA1	8.641033e-01
11695	PHLDA2	1
11696	PHLDA3	1
11697	PHLDB1	3.032457e-01
11698	PHLDB2	1.514808e-01
11699	PHLDB3	1
11700	PHLPP1	8.273935e-01
11701	PHLPP2	7.042882e-01
11702	PHOSPHO1	1
11703	PHOSPHO2	5.113127e-01
11704	PHOX2B	1.759365e-01
11705	PHPT1	3.900027e-01
11706	PHRF1	9.992599e-01
In gene PHTF1 the following bins exceed PROBCAP:
    COAD-A6-2678	categ 6	N = 2361    n = 1	mu =   2.07e-07
11707	PHTF1	7.429095e-02
11708	PHTF2	5.910577e-01
11709	PHYH	7.799670e-01
11710	PHYHD1	9.895816e-02
11711	PHYHIP	2.340312e-01
11712	PHYHIPL	1.619960e-01
11713	PI15	4.871877e-02
11714	PI16	8.776679e-01
11715	PI3	4.686250e-01
11716	PI4K2A	6.661055e-01
11717	PI4K2B	4.418470e-01
11718	PI4KA	6.653184e-02
11719	PI4KB	9.364706e-01
11720	PIAS1	3.963933e-01
Done

Running MutSig 2:
Scatter job 130: processing genes 11630 - 11720
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PHF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.770970e-03	ci left: 9.480432e-01	ci right 9.564908e-01	k: 9524	n:10000
Cons ci ratio: 1.496762e-02	ci left: 8.661108e-01	ci right 8.792713e-01	k: 8728	n:10000
KS ci ratio: 1.635299e-02	ci left: 8.446839e-01	ci right 8.587105e-01	k: 8518	n:10000
PHF3   10000 perm   3 sec   (3596 perm/sec)   p_kst 8.518000e-01   p_cons 8.728000e-01   p_joint 9.524000e-01

Outputting figure to mutsig2_images.part000000000130/PHF3.16_6180_10000_0.8518_0.8728_0.9524.png
                gene_name: PHF3
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 2 percent done.
PI4KA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
Cons ci ratio: 2.764588e-02	ci left: 6.584707e-01	ci right 6.770315e-01	k: 6678	n:10000
KS ci ratio: 2.824171e-01	ci left: 1.622887e-02	ci right 2.165650e-02	k: 188	n:10000
PI4KA   10000 perm   3 sec   (3904 perm/sec)   p_kst 1.880000e-02   p_cons 6.678000e-01   p_joint 3.560000e-02

Joint ci ratio: 1.271729e-01	ci left: 4.245914e-02	ci right 4.827396e-02	k: 906	n:20000
Cons ci ratio: 2.014497e-02	ci left: 6.477119e-01	ci right 6.609433e-01	k: 13087	n:20000
KS ci ratio: 1.932871e-01	ci left: 1.819999e-02	ci right 2.214125e-02	k: 402	n:20000
PI4KA   20000 perm   6 sec   (3590 perm/sec)   p_kst 2.010000e-02   p_cons 6.543500e-01   p_joint 4.530000e-02

Joint ci ratio: 9.669752e-02	ci left: 4.941668e-02	ci right 5.447054e-02	k: 1557	n:30000
Cons ci ratio: 1.642247e-02	ci left: 6.496562e-01	ci right 6.604471e-01	k: 19652	n:30000
KS ci ratio: 1.526791e-01	ci left: 1.985641e-02	ci right 2.317049e-02	k: 644	n:30000
PI4KA   30000 perm   9 sec   (3466 perm/sec)   p_kst 2.146667e-02   p_cons 6.550667e-01   p_joint 5.190000e-02

Joint ci ratio: 9.821357e-02	ci left: 3.641590e-02	ci right 4.020151e-02	k: 1531	n:40000
Cons ci ratio: 1.422368e-02	ci left: 6.503429e-01	ci right 6.596846e-01	k: 26201	n:40000
KS ci ratio: 1.308321e-01	ci left: 2.051221e-02	ci right 2.340777e-02	k: 877	n:40000
PI4KA   40000 perm   12 sec   (3350 perm/sec)   p_kst 2.192500e-02   p_cons 6.550250e-01   p_joint 3.827500e-02

Joint ci ratio: 6.786107e-02	ci left: 6.043309e-02	ci right 6.469787e-02	k: 3127	n:50000
Cons ci ratio: 1.269242e-02	ci left: 6.518974e-01	ci right 6.602445e-01	k: 32804	n:50000
KS ci ratio: 1.177072e-01	ci left: 2.042129e-02	ci right 2.299466e-02	k: 1084	n:50000
PI4KA   50000 perm   15 sec   (3259 perm/sec)   p_kst 2.168000e-02   p_cons 6.560800e-01   p_joint 6.254000e-02

Joint ci ratio: 6.742274e-02	ci left: 5.153232e-02	ci right 5.514437e-02	k: 3199	n:60000
Cons ci ratio: 1.160917e-02	ci left: 6.513811e-01	ci right 6.590039e-01	k: 39312	n:60000
KS ci ratio: 1.071576e-01	ci left: 2.064638e-02	ci right 2.300019e-02	k: 1308	n:60000
PI4KA   60000 perm   19 sec   (3222 perm/sec)   p_kst 2.180000e-02   p_cons 6.552000e-01   p_joint 5.331667e-02

Joint ci ratio: 6.572657e-02	ci left: 4.676553e-02	ci right 4.995776e-02	k: 3384	n:70000
Cons ci ratio: 1.073376e-02	ci left: 6.522669e-01	ci right 6.593202e-01	k: 45906	n:70000
KS ci ratio: 1.000889e-01	ci left: 2.036857e-02	ci right 2.252850e-02	k: 1500	n:70000
PI4KA   70000 perm   22 sec   (3187 perm/sec)   p_kst 2.142857e-02   p_cons 6.558000e-01   p_joint 4.834286e-02

Joint ci ratio: 6.201041e-02	ci left: 4.609781e-02	ci right 4.906011e-02	k: 3805	n:80000
Cons ci ratio: 1.004775e-02	ci left: 6.521702e-01	ci right 6.587686e-01	k: 52438	n:80000
KS ci ratio: 9.425628e-02	ci left: 2.016409e-02	ci right 2.217084e-02	k: 1692	n:80000
PI4KA   80000 perm   25 sec   (3151 perm/sec)   p_kst 2.115000e-02   p_cons 6.554750e-01   p_joint 4.756250e-02

Outputting figure to mutsig2_images.part000000000130/PI4KA.15_6351_80000_0.02115_0.65548_0.047563.png
                gene_name: PI4KA
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.049 

Current progress: 3 percent done.
PHIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.900648e-02	ci left: 4.925508e-01	ci right 5.122478e-01	k: 5024	n:10000
Cons ci ratio: 1.750290e-02	ci left: 8.263569e-01	ci right 8.410482e-01	k: 8338	n:10000
KS ci ratio: 5.226699e-02	ci left: 3.504847e-01	ci right 3.693970e-01	k: 3599	n:10000
PHIP   10000 perm   2 sec   (4048 perm/sec)   p_kst 3.599000e-01   p_cons 8.338000e-01   p_joint 5.024000e-01

Outputting figure to mutsig2_images.part000000000130/PHIP.13_5626_10000_0.3599_0.8338_0.5024.png
                gene_name: PHIP
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 5 percent done.
PHEX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.876412e-02	ci left: 8.058264e-01	ci right 8.211905e-01	k: 8136	n:10000
KS ci ratio: 1.703364e-02	ci left: 8.338874e-01	ci right 8.483133e-01	k: 8412	n:10000
PHEX   10000 perm   2 sec   (5349 perm/sec)   p_kst 8.412000e-01   p_cons 8.136000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHEX.10_2338_10000_0.8412_0.8136_1.png
                gene_name: PHEX
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
PHF20L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
Cons ci ratio: 5.683687e-03	ci left: 9.765289e-01	ci right 9.821870e-01	k: 9795	n:10000
KS ci ratio: 4.364913e-01	ci left: 6.259350e-03	ci right 9.836166e-03	k: 79	n:10000
PHF20L1   10000 perm   2 sec   (4950 perm/sec)   p_kst 7.900000e-03   p_cons 9.795000e-01   p_joint 4.150000e-02

Joint ci ratio: 1.997038e-01	ci left: 1.701043e-02	ci right 2.083125e-02	k: 377	n:20000
Cons ci ratio: 4.073929e-03	ci left: 9.768122e-01	ci right 9.808469e-01	k: 19578	n:20000
KS ci ratio: 3.057768e-01	ci left: 6.904673e-03	ci right 9.441445e-03	k: 162	n:20000
PHF20L1   20000 perm   4 sec   (4491 perm/sec)   p_kst 8.100000e-03   p_cons 9.789000e-01   p_joint 1.885000e-02

Joint ci ratio: 1.387939e-01	ci left: 2.409978e-02	ci right 2.772616e-02	k: 776	n:30000
Cons ci ratio: 3.341188e-03	ci left: 9.770024e-01	ci right 9.803040e-01	k: 29361	n:30000
KS ci ratio: 2.454029e-01	ci left: 7.398410e-03	ci right 9.498454e-03	k: 252	n:30000
PHF20L1   30000 perm   7 sec   (4309 perm/sec)   p_kst 8.400000e-03   p_cons 9.787000e-01   p_joint 2.586667e-02

Joint ci ratio: 1.138684e-01	ci left: 2.713420e-02	ci right 3.043468e-02	k: 1150	n:40000
Cons ci ratio: 2.879144e-03	ci left: 9.774438e-01	ci right 9.802861e-01	k: 39156	n:40000
KS ci ratio: 2.086115e-01	ci left: 7.836928e-03	ci right 9.685449e-03	k: 349	n:40000
PHF20L1   40000 perm   10 sec   (4190 perm/sec)   p_kst 8.725000e-03   p_cons 9.789000e-01   p_joint 2.875000e-02

Joint ci ratio: 1.212379e-01	ci left: 1.923703e-02	ci right 2.173908e-02	k: 1023	n:50000
Cons ci ratio: 2.693239e-03	ci left: 9.756069e-01	ci right 9.782573e-01	k: 48848	n:50000
KS ci ratio: 1.841619e-01	ci left: 8.152640e-03	ci right 9.825115e-03	k: 448	n:50000
PHF20L1   50000 perm   12 sec   (4047 perm/sec)   p_kst 8.960000e-03   p_cons 9.769600e-01   p_joint 2.046000e-02

Joint ci ratio: 1.051230e-01	ci left: 2.145805e-02	ci right 2.385509e-02	k: 1358	n:60000
Cons ci ratio: 2.452591e-03	ci left: 9.758372e-01	ci right 9.782496e-01	k: 58624	n:60000
KS ci ratio: 1.687177e-01	ci left: 8.164001e-03	ci right 9.684071e-03	k: 534	n:60000
PHF20L1   60000 perm   15 sec   (3947 perm/sec)   p_kst 8.900000e-03   p_cons 9.770667e-01   p_joint 2.263333e-02

Joint ci ratio: 9.204221e-02	ci left: 2.409340e-02	ci right 2.643190e-02	k: 1767	n:70000
Cons ci ratio: 2.254344e-03	ci left: 9.762572e-01	ci right 9.784744e-01	k: 68417	n:70000
KS ci ratio: 1.611148e-01	ci left: 7.709774e-03	ci right 9.074305e-03	k: 586	n:70000
PHF20L1   70000 perm   18 sec   (3882 perm/sec)   p_kst 8.371429e-03   p_cons 9.773857e-01   p_joint 2.524286e-02

Joint ci ratio: 8.186388e-02	ci left: 2.672069e-02	ci right 2.901372e-02	k: 2228	n:80000
Cons ci ratio: 2.125804e-03	ci left: 9.759631e-01	ci right 9.780521e-01	k: 78162	n:80000
KS ci ratio: 1.486947e-01	ci left: 7.971772e-03	ci right 9.264242e-03	k: 688	n:80000
PHF20L1   80000 perm   21 sec   (3823 perm/sec)   p_kst 8.600000e-03   p_cons 9.770250e-01   p_joint 2.785000e-02

Joint ci ratio: 8.429083e-02	ci left: 2.247661e-02	ci right 2.446538e-02	k: 2111	n:90000
Cons ci ratio: 2.008259e-03	ci left: 9.759315e-01	ci right 9.779042e-01	k: 87924	n:90000
KS ci ratio: 1.394779e-01	ci left: 8.092873e-03	ci right 9.316886e-03	k: 782	n:90000
PHF20L1   90000 perm   24 sec   (3766 perm/sec)   p_kst 8.688889e-03   p_cons 9.769333e-01   p_joint 2.345556e-02

Joint ci ratio: 7.667736e-02	ci left: 2.449250e-02	ci right 2.645516e-02	k: 2546	n:100000
Cons ci ratio: 1.903610e-03	ci left: 9.760214e-01	ci right 9.778908e-01	k: 97697	n:100000
KS ci ratio: 1.330162e-01	ci left: 8.036991e-03	ci right 9.191782e-03	k: 860	n:100000
PHF20L1   100000 perm   27 sec   (3706 perm/sec)   p_kst 8.600000e-03   p_cons 9.769700e-01   p_joint 2.546000e-02

Joint ci ratio: 7.127291e-02	ci left: 2.580890e-02	ci right 2.772525e-02	k: 2943	n:110000
Cons ci ratio: 1.816710e-03	ci left: 9.760228e-01	ci right 9.778064e-01	k: 107462	n:110000
KS ci ratio: 1.266979e-01	ci left: 8.080387e-03	ci right 9.182119e-03	k: 948	n:110000
PHF20L1   110000 perm   30 sec   (3650 perm/sec)   p_kst 8.618182e-03   p_cons 9.769273e-01   p_joint 2.675455e-02

Joint ci ratio: 6.919237e-02	ci left: 2.514789e-02	ci right 2.695845e-02	k: 3125	n:120000
Cons ci ratio: 1.738143e-03	ci left: 9.760937e-01	ci right 9.777999e-01	k: 117235	n:120000
KS ci ratio: 1.210257e-01	ci left: 8.141880e-03	ci right 9.198737e-03	k: 1039	n:120000
PHF20L1   120000 perm   33 sec   (3598 perm/sec)   p_kst 8.658333e-03   p_cons 9.769583e-01   p_joint 2.604167e-02

Joint ci ratio: 6.500008e-02	ci left: 2.633004e-02	ci right 2.810652e-02	k: 3537	n:130000
Cons ci ratio: 1.663242e-03	ci left: 9.763114e-01	ci right 9.779441e-01	k: 127028	n:130000
KS ci ratio: 1.173150e-01	ci left: 8.015573e-03	ci right 9.021919e-03	k: 1106	n:130000
PHF20L1   130000 perm   37 sec   (3545 perm/sec)   p_kst 8.507692e-03   p_cons 9.771385e-01   p_joint 2.720769e-02

Joint ci ratio: 6.472795e-02	ci left: 2.470161e-02	ci right 2.636097e-02	k: 3573	n:140000
Cons ci ratio: 1.601540e-03	ci left: 9.763755e-01	ci right 9.779475e-01	k: 136804	n:140000
KS ci ratio: 1.135848e-01	ci left: 7.956327e-03	ci right 8.921341e-03	k: 1180	n:140000
PHF20L1   140000 perm   40 sec   (3483 perm/sec)   p_kst 8.428571e-03   p_cons 9.771714e-01   p_joint 2.552143e-02

Joint ci ratio: 6.536764e-02	ci left: 2.264744e-02	ci right 2.418439e-02	k: 3511	n:150000
Cons ci ratio: 1.546923e-03	ci left: 9.764117e-01	ci right 9.779298e-01	k: 146577	n:150000
KS ci ratio: 1.099243e-01	ci left: 7.944328e-03	ci right 8.874824e-03	k: 1260	n:150000
PHF20L1   150000 perm   44 sec   (3434 perm/sec)   p_kst 8.400000e-03   p_cons 9.771800e-01   p_joint 2.340667e-02

Joint ci ratio: 6.975411e-02	ci left: 1.868062e-02	ci right 2.003687e-02	k: 3096	n:160000
Cons ci ratio: 1.544511e-03	ci left: 9.750035e-01	ci right 9.765167e-01	k: 156123	n:160000
KS ci ratio: 1.058429e-01	ci left: 8.049887e-03	ci right 8.955558e-03	k: 1359	n:160000
PHF20L1   160000 perm   47 sec   (3389 perm/sec)   p_kst 8.493750e-03   p_cons 9.757687e-01   p_joint 1.935000e-02

Joint ci ratio: 6.240713e-02	ci left: 2.197401e-02	ci right 2.339528e-02	k: 3855	n:170000
Cons ci ratio: 1.493101e-03	ci left: 9.751957e-01	ci right 9.766586e-01	k: 165909	n:170000
KS ci ratio: 1.022553e-01	ci left: 8.132123e-03	ci right 9.014171e-03	k: 1456	n:170000
PHF20L1   170000 perm   51 sec   (3348 perm/sec)   p_kst 8.564706e-03   p_cons 9.759353e-01   p_joint 2.267647e-02

Joint ci ratio: 6.453035e-02	ci left: 1.944022e-02	ci right 2.074197e-02	k: 3615	n:180000
Cons ci ratio: 1.452972e-03	ci left: 9.751529e-01	ci right 9.765762e-01	k: 175657	n:180000
KS ci ratio: 9.939727e-02	ci left: 8.140655e-03	ci right 8.997508e-03	k: 1541	n:180000
PHF20L1   180000 perm   54 sec   (3312 perm/sec)   p_kst 8.561111e-03   p_cons 9.758722e-01   p_joint 2.008333e-02

Outputting figure to mutsig2_images.part000000000130/PHF20L1.8_3230_180000_0.0085611_0.97587_0.020083.png
                gene_name: PHF20L1
               theta_stop: 0.099 
                    nperm: 180000 
                     p_ks: 0.0086 
        ci_ks_bounds_left: 0.0081 
       ci_ks_bounds_right: 0.0090 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 8 percent done.
PHKA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.266772e-02	ci left: 8.995979e-01	ci right 9.111647e-01	k: 9055	n:10000
Cons ci ratio: 3.371106e-02	ci left: 5.650398e-01	ci right 5.845166e-01	k: 5748	n:10000
KS ci ratio: 2.269208e-02	ci left: 7.403801e-01	ci right 7.574747e-01	k: 7490	n:10000
PHKA1   10000 perm   2 sec   (4512 perm/sec)   p_kst 7.490000e-01   p_cons 5.748000e-01   p_joint 9.055000e-01

Outputting figure to mutsig2_images.part000000000130/PHKA1.8_3800_10000_0.749_0.5748_0.9055.png
                gene_name: PHKA1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 10 percent done.
PHLDB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.397447e-02	ci left: 4.329326e-01	ci right 4.525008e-01	k: 4427	n:10000
Cons ci ratio: 4.401905e-02	ci left: 4.324339e-01	ci right 4.519998e-01	k: 4422	n:10000
KS ci ratio: 6.473460e-02	ci left: 2.595354e-01	ci right 2.769998e-01	k: 2682	n:10000
PHLDB2   10000 perm   2 sec   (4648 perm/sec)   p_kst 2.682000e-01   p_cons 4.422000e-01   p_joint 4.427000e-01

Outputting figure to mutsig2_images.part000000000130/PHLDB2.8_3915_10000_0.2682_0.4422_0.4427.png
                gene_name: PHLDB2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 11 percent done.
PGK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.997575e-02	ci left: 1.858959e-01	ci right 2.014830e-01	k: 1936	n:10000
Cons ci ratio: 5.288510e-02	ci left: 3.451178e-01	ci right 3.639670e-01	k: 3545	n:10000
KS ci ratio: 9.237174e-02	ci left: 1.455058e-01	ci right 1.596972e-01	k: 1525	n:10000
PGK2   10000 perm   2 sec   (5914 perm/sec)   p_kst 1.525000e-01   p_cons 3.545000e-01   p_joint 1.936000e-01

Outputting figure to mutsig2_images.part000000000130/PGK2.7_1258_10000_0.1525_0.3545_0.1936.png
                gene_name: PGK2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 13 percent done.
PHACTR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.546883e-02	ci left: 8.584522e-01	ci right 8.719343e-01	k: 8653	n:10000
Cons ci ratio: 2.907922e-02	ci left: 6.355301e-01	ci right 6.543853e-01	k: 6450	n:10000
KS ci ratio: 2.399040e-02	ci left: 7.186579e-01	ci right 7.362094e-01	k: 7275	n:10000
PHACTR3   10000 perm   2 sec   (5499 perm/sec)   p_kst 7.275000e-01   p_cons 6.450000e-01   p_joint 8.653000e-01

Outputting figure to mutsig2_images.part000000000130/PHACTR3.7_1732_10000_0.7275_0.645_0.8653.png
                gene_name: PHACTR3
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 14 percent done.
PHC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.589720e-02	ci left: 8.518204e-01	ci right 8.655699e-01	k: 8588	n:10000
Cons ci ratio: 3.928043e-02	ci left: 4.890517e-01	ci right 5.087489e-01	k: 4989	n:10000
KS ci ratio: 2.428092e-02	ci left: 7.138119e-01	ci right 7.314582e-01	k: 7227	n:10000
PHC2   10000 perm   2 sec   (5577 perm/sec)   p_kst 7.227000e-01   p_cons 4.989000e-01   p_joint 8.588000e-01

Outputting figure to mutsig2_images.part000000000130/PHC2.7_2633_10000_0.7227_0.4989_0.8588.png
                gene_name: PHC2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 16 percent done.
PHF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.942915e-02	ci left: 7.948639e-01	ci right 8.105594e-01	k: 8028	n:10000
KS ci ratio: 1.085058e-02	ci left: 9.236870e-01	ci right 9.338615e-01	k: 9289	n:10000
PHF17   10000 perm   2 sec   (5198 perm/sec)   p_kst 9.289000e-01   p_cons 8.028000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHF17.7_2596_10000_0.9289_0.8028_1.png
                gene_name: PHF17
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
PHLDB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.814999e-02	ci left: 5.036510e-01	ci right 5.233411e-01	k: 5135	n:10000
Cons ci ratio: 2.176266e-02	ci left: 7.559561e-01	ci right 7.726896e-01	k: 7644	n:10000
KS ci ratio: 5.182757e-02	ci left: 3.543616e-01	ci right 3.733178e-01	k: 3638	n:10000
PHLDB1   10000 perm   2 sec   (4857 perm/sec)   p_kst 3.638000e-01   p_cons 7.644000e-01   p_joint 5.135000e-01

Outputting figure to mutsig2_images.part000000000130/PHLDB1.7_4222_10000_0.3638_0.7644_0.5135.png
                gene_name: PHLDB1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 19 percent done.
PHTF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.008330e-02	ci left: 7.840118e-01	ci right 8.000177e-01	k: 7921	n:10000
Cons ci ratio: 4.527199e-02	ci left: 4.186732e-01	ci right 4.381685e-01	k: 4284	n:10000
KS ci ratio: 2.471135e-02	ci left: 7.066461e-01	ci right 7.244281e-01	k: 7156	n:10000
PHTF1   10000 perm   2 sec   (4727 perm/sec)   p_kst 7.156000e-01   p_cons 4.284000e-01   p_joint 7.921000e-01

Outputting figure to mutsig2_images.part000000000130/PHTF1.7_2361_10000_0.7156_0.4284_0.7921.png
                gene_name: PHTF1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 21 percent done.
PHF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.089238e-02	ci left: 4.689664e-01	ci right 4.886460e-01	k: 4788	n:10000
Cons ci ratio: 7.630513e-02	ci left: 2.007708e-01	ci right 2.167992e-01	k: 2087	n:10000
KS ci ratio: 4.005790e-02	ci left: 4.792569e-01	ci right 4.989495e-01	k: 4891	n:10000
PHF2   10000 perm   2 sec   (4660 perm/sec)   p_kst 4.891000e-01   p_cons 2.087000e-01   p_joint 4.788000e-01

Outputting figure to mutsig2_images.part000000000130/PHF2.6_3379_10000_0.4891_0.2087_0.4788.png
                gene_name: PHF2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 22 percent done.
PHF20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.875699e-02	ci left: 2.367933e-01	ci right 2.537553e-01	k: 2452	n:10000
Cons ci ratio: 1.081773e-02	ci left: 9.241000e-01	ci right 9.342483e-01	k: 9293	n:10000
KS ci ratio: 9.327507e-02	ci left: 1.430542e-01	ci right 1.571503e-01	k: 1500	n:10000
PHF20   10000 perm   2 sec   (5238 perm/sec)   p_kst 1.500000e-01   p_cons 9.293000e-01   p_joint 2.452000e-01

Outputting figure to mutsig2_images.part000000000130/PHF20.6_3107_10000_0.15_0.9293_0.2452.png
                gene_name: PHF20
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 24 percent done.
PHF21A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.800821e-02	ci left: 1.936760e-01	ci right 2.094982e-01	k: 2015	n:10000
Cons ci ratio: 1.414688e-01	ci left: 6.623521e-02	ci right 7.641622e-02	k: 712	n:10000
KS ci ratio: 2.729774e-02	ci left: 6.641089e-01	ci right 6.825900e-01	k: 6734	n:10000
PHF21A   10000 perm   2 sec   (5231 perm/sec)   p_kst 6.734000e-01   p_cons 7.120000e-02   p_joint 2.015000e-01

Joint ci ratio: 5.848845e-02	ci left: 1.780085e-01	ci right 1.887837e-01	k: 3667	n:20000
Cons ci ratio: 1.062673e-01	ci left: 6.030523e-02	ci right 6.712229e-02	k: 1273	n:20000
KS ci ratio: 1.928556e-02	ci left: 6.672527e-01	ci right 6.802968e-01	k: 13476	n:20000
PHF21A   20000 perm   4 sec   (4651 perm/sec)   p_kst 6.738000e-01   p_cons 6.365000e-02   p_joint 1.833500e-01

Joint ci ratio: 4.364193e-02	ci left: 2.072871e-01	ci right 2.165687e-01	k: 6357	n:30000
Cons ci ratio: 8.626237e-02	ci left: 6.161532e-02	ci right 6.720274e-02	k: 1931	n:30000
KS ci ratio: 1.583042e-02	ci left: 6.661188e-01	ci right 6.767814e-01	k: 20144	n:30000
PHF21A   30000 perm   7 sec   (4470 perm/sec)   p_kst 6.714667e-01   p_cons 6.436667e-02   p_joint 2.119000e-01

Outputting figure to mutsig2_images.part000000000130/PHF21A.6_2137_30000_0.67147_0.064367_0.2119.png
                gene_name: PHF21A
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 25 percent done.
PHKA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.226974e-02	ci left: 7.474583e-01	ci right 7.643924e-01	k: 7560	n:10000
Cons ci ratio: 2.111569e-02	ci left: 7.667873e-01	ci right 7.832521e-01	k: 7751	n:10000
KS ci ratio: 2.742813e-02	ci left: 6.619944e-01	ci right 6.805058e-01	k: 6713	n:10000
PHKA2   10000 perm   2 sec   (5024 perm/sec)   p_kst 6.713000e-01   p_cons 7.751000e-01   p_joint 7.560000e-01

Outputting figure to mutsig2_images.part000000000130/PHKA2.6_3840_10000_0.6713_0.7751_0.756.png
                gene_name: PHKA2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 27 percent done.
PHKB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.118695e-02	ci left: 2.820102e-01	ci right 2.999117e-01	k: 2909	n:10000
Cons ci ratio: 1.136577e-01	ci left: 1.002268e-01	ci right 1.124036e-01	k: 1062	n:10000
KS ci ratio: 4.064743e-02	ci left: 4.719632e-01	ci right 4.916474e-01	k: 4818	n:10000
PHKB   10000 perm   2 sec   (5056 perm/sec)   p_kst 4.818000e-01   p_cons 1.062000e-01   p_joint 2.909000e-01

Joint ci ratio: 4.474790e-02	ci left: 2.710539e-01	ci right 2.835109e-01	k: 5545	n:20000
Cons ci ratio: 8.181969e-02	ci left: 9.872217e-02	ci right 1.071937e-01	k: 2058	n:20000
KS ci ratio: 2.974133e-02	ci left: 4.578682e-01	ci right 4.717420e-01	k: 9296	n:20000
PHKB   20000 perm   4 sec   (4578 perm/sec)   p_kst 4.648000e-01   p_cons 1.029000e-01   p_joint 2.772500e-01

Outputting figure to mutsig2_images.part000000000130/PHKB.6_3560_20000_0.4648_0.1029_0.27725.png
                gene_name: PHKB
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 29 percent done.
PI15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.177040e-02	ci left: 5.938334e-01	ci right 6.131063e-01	k: 6035	n:10000
Cons ci ratio: 1.451967e-02	ci left: 8.728564e-01	ci right 8.857217e-01	k: 8794	n:10000
KS ci ratio: 6.054087e-02	ci left: 2.863697e-01	ci right 3.043496e-01	k: 2953	n:10000
PI15   10000 perm   2 sec   (6529 perm/sec)   p_kst 2.953000e-01   p_cons 8.794000e-01   p_joint 6.035000e-01

Outputting figure to mutsig2_images.part000000000130/PI15.6_797_10000_0.2953_0.8794_0.6035.png
                gene_name: PI15
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 30 percent done.
PGBD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.424497e-02	ci left: 5.573205e-01	ci right 5.768404e-01	k: 5671	n:10000
Cons ci ratio: 4.454027e-02	ci left: 4.266495e-01	ci right 4.461876e-01	k: 4364	n:10000
KS ci ratio: 4.345259e-02	ci left: 4.388183e-01	ci right 4.584117e-01	k: 4486	n:10000
PGBD5   10000 perm   2 sec   (6208 perm/sec)   p_kst 4.486000e-01   p_cons 4.364000e-01   p_joint 5.671000e-01

Outputting figure to mutsig2_images.part000000000130/PGBD5.5_1396_10000_0.4486_0.4364_0.5671.png
                gene_name: PGBD5
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 32 percent done.
PGC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.266726e-02	ci left: 2.171426e-01	ci right 2.336177e-01	k: 2253	n:10000
Cons ci ratio: 6.432495e-02	ci left: 2.620092e-01	ci right 2.795245e-01	k: 2707	n:10000
KS ci ratio: 5.953818e-02	ci left: 2.933074e-01	ci right 3.114079e-01	k: 3023	n:10000
PGC   10000 perm   2 sec   (5581 perm/sec)   p_kst 3.023000e-01   p_cons 2.707000e-01   p_joint 2.253000e-01

Outputting figure to mutsig2_images.part000000000130/PGC.5_1512_10000_0.3023_0.2707_0.2253.png
                gene_name: PGC
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 33 percent done.
PGCP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.331365e-02	ci left: 7.299703e-01	ci right 7.472905e-01	k: 7387	n:10000
Cons ci ratio: 8.770970e-03	ci left: 9.480432e-01	ci right 9.564908e-01	k: 9524	n:10000
KS ci ratio: 2.698187e-02	ci left: 6.692450e-01	ci right 6.876510e-01	k: 6785	n:10000
PGCP   10000 perm   2 sec   (5963 perm/sec)   p_kst 6.785000e-01   p_cons 9.524000e-01   p_joint 7.387000e-01

Outputting figure to mutsig2_images.part000000000130/PGCP.5_1447_10000_0.6785_0.9524_0.7387.png
                gene_name: PGCP
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 35 percent done.
PGM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.560780e-02	ci left: 8.563091e-01	ci right 8.698787e-01	k: 8632	n:10000
Cons ci ratio: 4.054177e-02	ci left: 4.732619e-01	ci right 4.929479e-01	k: 4831	n:10000
KS ci ratio: 1.445118e-02	ci left: 8.738790e-01	ci right 8.866985e-01	k: 8804	n:10000
PGM3   10000 perm   2 sec   (6189 perm/sec)   p_kst 8.804000e-01   p_cons 4.831000e-01   p_joint 8.632000e-01

Outputting figure to mutsig2_images.part000000000130/PGM3.5_1677_10000_0.8804_0.4831_0.8632.png
                gene_name: PGM3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 37 percent done.
PGM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.597330e-01	ci left: 5.224686e-02	ci right 6.141345e-02	k: 567	n:10000
Cons ci ratio: 1.670282e-01	ci left: 4.782537e-02	ci right 5.663779e-02	k: 521	n:10000
KS ci ratio: 1.232929e-01	ci left: 8.611301e-02	ci right 9.752607e-02	k: 917	n:10000
PGM5   10000 perm   2 sec   (5197 perm/sec)   p_kst 9.170000e-02   p_cons 5.210000e-02   p_joint 5.670000e-02

Joint ci ratio: 1.018944e-01	ci left: 6.537877e-02	ci right 7.244718e-02	k: 1377	n:20000
Cons ci ratio: 1.143993e-01	ci left: 5.226943e-02	ci right 5.866058e-02	k: 1108	n:20000
KS ci ratio: 8.617888e-02	ci left: 8.969559e-02	ci right 9.782296e-02	k: 1874	n:20000
PGM5   20000 perm   4 sec   (4699 perm/sec)   p_kst 9.370000e-02   p_cons 5.540000e-02   p_joint 6.885000e-02

Joint ci ratio: 9.259969e-02	ci left: 5.375070e-02	ci right 5.900230e-02	k: 1690	n:30000
Cons ci ratio: 9.294970e-02	ci left: 5.335946e-02	ci right 5.859361e-02	k: 1678	n:30000
KS ci ratio: 7.107149e-02	ci left: 8.878517e-02	ci right 9.536074e-02	k: 2761	n:30000
PGM5   30000 perm   7 sec   (4519 perm/sec)   p_kst 9.203333e-02   p_cons 5.593333e-02   p_joint 5.633333e-02

Outputting figure to mutsig2_images.part000000000130/PGM5.5_1748_30000_0.092033_0.055933_0.056333.png
                gene_name: PGM5
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.059 

Current progress: 38 percent done.
PHACTR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.448599e-02	ci left: 4.272478e-01	ci right 4.467889e-01	k: 4370	n:10000
Cons ci ratio: 6.682605e-02	ci left: 2.473694e-01	ci right 2.645729e-01	k: 2559	n:10000
KS ci ratio: 3.373865e-02	ci left: 5.646388e-01	ci right 5.841179e-01	k: 5744	n:10000
PHACTR4   10000 perm   2 sec   (5831 perm/sec)   p_kst 5.744000e-01   p_cons 2.559000e-01   p_joint 4.370000e-01

Outputting figure to mutsig2_images.part000000000130/PHACTR4.5_2211_10000_0.5744_0.2559_0.437.png
                gene_name: PHACTR4
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 40 percent done.
PHC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.564270e-02	ci left: 6.912135e-01	ci right 7.092697e-01	k: 7003	n:10000
Cons ci ratio: 1.291031e-02	ci left: 8.962104e-01	ci right 9.079542e-01	k: 9022	n:10000
KS ci ratio: 4.746511e-02	ci left: 3.957559e-01	ci right 4.150992e-01	k: 4054	n:10000
PHC1   10000 perm   2 sec   (5527 perm/sec)   p_kst 4.054000e-01   p_cons 9.022000e-01   p_joint 7.003000e-01

Outputting figure to mutsig2_images.part000000000130/PHC1.5_3071_10000_0.4054_0.9022_0.7003.png
                gene_name: PHC1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 41 percent done.
PHF14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.382733e-02	ci left: 1.415836e-01	ci right 1.556218e-01	k: 1485	n:10000
Cons ci ratio: 4.238824e-02	ci left: 4.510928e-01	ci right 4.707300e-01	k: 4609	n:10000
KS ci ratio: 1.490358e-01	ci left: 5.985938e-02	ci right 6.959607e-02	k: 646	n:10000
PHF14   10000 perm   2 sec   (5663 perm/sec)   p_kst 6.460000e-02   p_cons 4.609000e-01   p_joint 1.485000e-01

Joint ci ratio: 7.298527e-02	ci left: 1.214305e-01	ci right 1.306785e-01	k: 2520	n:20000
Cons ci ratio: 2.987617e-02	ci left: 4.556208e-01	ci right 4.694901e-01	k: 9251	n:20000
KS ci ratio: 1.038922e-01	ci left: 6.298759e-02	ci right 6.993910e-02	k: 1328	n:20000
PHF14   20000 perm   4 sec   (5068 perm/sec)   p_kst 6.640000e-02   p_cons 4.625500e-01   p_joint 1.260000e-01

Joint ci ratio: 5.819639e-02	ci left: 1.275304e-01	ci right 1.352078e-01	k: 3940	n:30000
Cons ci ratio: 2.447228e-02	ci left: 4.553133e-01	ci right 4.666275e-01	k: 13829	n:30000
KS ci ratio: 8.652594e-02	ci left: 6.125606e-02	ci right 6.682873e-02	k: 1920	n:30000
PHF14   30000 perm   6 sec   (4822 perm/sec)   p_kst 6.400000e-02   p_cons 4.609667e-01   p_joint 1.313333e-01

Outputting figure to mutsig2_images.part000000000130/PHF14.5_2735_30000_0.064_0.46097_0.13133.png
                gene_name: PHF14
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 43 percent done.
PHF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.581194e-02	ci left: 8.531464e-01	ci right 8.668432e-01	k: 8601	n:10000
KS ci ratio: 1.798676e-02	ci left: 8.185266e-01	ci right 8.334830e-01	k: 8261	n:10000
PHF7   10000 perm   2 sec   (5885 perm/sec)   p_kst 8.261000e-01   p_cons 8.601000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHF7.5_1186_10000_0.8261_0.8601_1.png
                gene_name: PHF7
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
PHF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.308937e-01	ci left: 7.688883e-02	ci right 8.775595e-02	k: 822	n:10000
Cons ci ratio: 7.196689e-02	ci left: 2.204982e-01	ci right 2.370601e-01	k: 2287	n:10000
KS ci ratio: 1.179233e-01	ci left: 9.360310e-02	ci right 1.054314e-01	k: 994	n:10000
PHF8   10000 perm   2 sec   (5341 perm/sec)   p_kst 9.940000e-02   p_cons 2.287000e-01   p_joint 8.220000e-02

Joint ci ratio: 1.055174e-01	ci left: 6.113414e-02	ci right 6.799312e-02	k: 1290	n:20000
Cons ci ratio: 5.096823e-02	ci left: 2.223986e-01	ci right 2.340805e-01	k: 4564	n:20000
KS ci ratio: 8.399665e-02	ci left: 9.406032e-02	ci right 1.023569e-01	k: 1963	n:20000
PHF8   20000 perm   4 sec   (4824 perm/sec)   p_kst 9.815000e-02   p_cons 2.282000e-01   p_joint 6.450000e-02

Joint ci ratio: 7.978742e-02	ci left: 7.148785e-02	ci right 7.746153e-02	k: 2233	n:30000
Cons ci ratio: 4.127782e-02	ci left: 2.263395e-01	ci right 2.359126e-01	k: 6933	n:30000
KS ci ratio: 6.913119e-02	ci left: 9.344374e-02	ci right 1.001679e-01	k: 2903	n:30000
PHF8   30000 perm   7 sec   (4602 perm/sec)   p_kst 9.676667e-02   p_cons 2.311000e-01   p_joint 7.443333e-02

Outputting figure to mutsig2_images.part000000000130/PHF8.5_3441_30000_0.096767_0.2311_0.074433.png
                gene_name: PHF8
               theta_stop: 0.080 
                    nperm: 30000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.077 

Current progress: 46 percent done.
PHLPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
Cons ci ratio: 1.289403e-01	ci left: 7.912021e-02	ci right 9.012318e-02	k: 845	n:10000
KS ci ratio: 8.710826e-02	ci left: 1.610145e-01	ci right 1.757792e-01	k: 1683	n:10000
PHLPP1   10000 perm   2 sec   (4476 perm/sec)   p_kst 1.683000e-01   p_cons 8.450000e-02   p_joint 1.086000e-01

Joint ci ratio: 9.630520e-02	ci left: 7.280418e-02	ci right 8.021950e-02	k: 1529	n:20000
Cons ci ratio: 9.438160e-02	ci left: 7.564046e-02	ci right 8.318235e-02	k: 1587	n:20000
KS ci ratio: 6.197228e-02	ci left: 1.615090e-01	ci right 1.718881e-01	k: 3333	n:20000
PHLPP1   20000 perm   5 sec   (4044 perm/sec)   p_kst 1.666500e-01   p_cons 7.935000e-02   p_joint 7.645000e-02

Outputting figure to mutsig2_images.part000000000130/PHLPP1.5_5222_20000_0.16665_0.07935_0.07645.png
                gene_name: PHLPP1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.080 

Current progress: 48 percent done.
PHLPP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.851014e-02	ci left: 8.099906e-01	ci right 8.252239e-01	k: 8177	n:10000
Cons ci ratio: 1.325114e-02	ci left: 8.913891e-01	ci right 9.033783e-01	k: 8975	n:10000
KS ci ratio: 4.184646e-02	ci left: 4.574819e-01	ci right 4.771372e-01	k: 4673	n:10000
PHLPP2   10000 perm   2 sec   (4852 perm/sec)   p_kst 4.673000e-01   p_cons 8.975000e-01   p_joint 8.177000e-01

Outputting figure to mutsig2_images.part000000000130/PHLPP2.5_4044_10000_0.4673_0.8975_0.8177.png
                gene_name: PHLPP2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 49 percent done.
PHOX2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
Cons ci ratio: 1.075295e-01	ci left: 1.109577e-01	ci right 1.236661e-01	k: 1172	n:10000
KS ci ratio: 2.625735e-01	ci left: 1.893425e-02	ci right 2.474894e-02	k: 217	n:10000
PHOX2B   10000 perm   2 sec   (6502 perm/sec)   p_kst 2.170000e-02   p_cons 1.172000e-01   p_joint 4.450000e-02

Joint ci ratio: 1.701545e-01	ci left: 2.364696e-02	ci right 2.809234e-02	k: 516	n:20000
Cons ci ratio: 7.259044e-02	ci left: 1.226116e-01	ci right 1.318970e-01	k: 2544	n:20000
KS ci ratio: 1.829035e-01	ci left: 2.039379e-02	ci right 2.454665e-02	k: 448	n:20000
PHOX2B   20000 perm   3 sec   (5719 perm/sec)   p_kst 2.240000e-02   p_cons 1.272000e-01   p_joint 2.580000e-02

Joint ci ratio: 1.336716e-01	ci left: 2.600110e-02	ci right 2.975775e-02	k: 835	n:30000
Cons ci ratio: 6.429861e-02	ci left: 1.066778e-01	ci right 1.137979e-01	k: 3306	n:30000
KS ci ratio: 1.492846e-01	ci left: 2.078729e-02	ci right 2.417273e-02	k: 673	n:30000
PHOX2B   30000 perm   5 sec   (5461 perm/sec)   p_kst 2.243333e-02   p_cons 1.102000e-01   p_joint 2.783333e-02

Joint ci ratio: 1.264814e-01	ci left: 2.196496e-02	ci right 2.495477e-02	k: 937	n:40000
Cons ci ratio: 5.577923e-02	ci left: 1.068262e-01	ci right 1.129806e-01	k: 4395	n:40000
KS ci ratio: 1.300767e-01	ci left: 2.075422e-02	ci right 2.366572e-02	k: 887	n:40000
PHOX2B   40000 perm   8 sec   (5281 perm/sec)   p_kst 2.217500e-02   p_cons 1.098750e-01   p_joint 2.342500e-02

Joint ci ratio: 1.059660e-01	ci left: 2.522660e-02	ci right 2.806872e-02	k: 1331	n:50000
Cons ci ratio: 4.993651e-02	ci left: 1.069734e-01	ci right 1.124720e-01	k: 5485	n:50000
KS ci ratio: 1.153388e-01	ci left: 2.127617e-02	ci right 2.389966e-02	k: 1128	n:50000
PHOX2B   50000 perm   10 sec   (5136 perm/sec)   p_kst 2.256000e-02   p_cons 1.097000e-01   p_joint 2.662000e-02

Joint ci ratio: 1.098022e-01	ci left: 1.965674e-02	ci right 2.195660e-02	k: 1247	n:60000
Cons ci ratio: 4.532775e-02	ci left: 1.083155e-01	ci right 1.133556e-01	k: 6649	n:60000
KS ci ratio: 1.062076e-01	ci left: 2.101969e-02	ci right 2.339350e-02	k: 1331	n:60000
PHOX2B   60000 perm   12 sec   (5020 perm/sec)   p_kst 2.218333e-02   p_cons 1.108167e-01   p_joint 2.078333e-02

Joint ci ratio: 1.060556e-01	ci left: 1.812668e-02	ci right 2.017060e-02	k: 1339	n:70000
Cons ci ratio: 4.183309e-02	ci left: 1.091207e-01	ci right 1.137973e-01	k: 7801	n:70000
KS ci ratio: 9.820005e-02	ci left: 2.116308e-02	ci right 2.336248e-02	k: 1557	n:70000
PHOX2B   70000 perm   14 sec   (4912 perm/sec)   p_kst 2.224286e-02   p_cons 1.114429e-01   p_joint 1.912857e-02

Joint ci ratio: 9.227131e-02	ci left: 2.104354e-02	ci right 2.309133e-02	k: 1764	n:80000
Cons ci ratio: 3.908340e-02	ci left: 1.095127e-01	ci right 1.138905e-01	k: 8935	n:80000
KS ci ratio: 9.232481e-02	ci left: 2.101910e-02	ci right 2.306576e-02	k: 1762	n:80000
PHOX2B   80000 perm   17 sec   (4804 perm/sec)   p_kst 2.202500e-02   p_cons 1.116875e-01   p_joint 2.205000e-02

Outputting figure to mutsig2_images.part000000000130/PHOX2B.5_957_80000_0.022025_0.11169_0.02205.png
                gene_name: PHOX2B
               theta_stop: 0.092 
                    nperm: 80000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 51 percent done.
PGLYRP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.724969e-02	ci left: 2.449966e-01	ci right 2.621471e-01	k: 2535	n:10000
Cons ci ratio: 4.705415e-02	ci left: 3.999392e-01	ci right 4.193135e-01	k: 4096	n:10000
KS ci ratio: 1.036150e-01	ci left: 1.186757e-01	ci right 1.317435e-01	k: 1251	n:10000
PGLYRP4   10000 perm   2 sec   (6441 perm/sec)   p_kst 1.251000e-01   p_cons 4.096000e-01   p_joint 2.535000e-01

Joint ci ratio: 5.404649e-02	ci left: 2.025907e-01	ci right 2.138943e-01	k: 4164	n:20000
Cons ci ratio: 3.222175e-02	ci left: 4.183846e-01	ci right 4.321371e-01	k: 8505	n:20000
KS ci ratio: 7.320138e-02	ci left: 1.207908e-01	ci right 1.300185e-01	k: 2507	n:20000
PGLYRP4   20000 perm   3 sec   (5734 perm/sec)   p_kst 1.253500e-01   p_cons 4.252500e-01   p_joint 2.082000e-01

Outputting figure to mutsig2_images.part000000000130/PGLYRP4.4_1154_20000_0.12535_0.42525_0.2082.png
                gene_name: PGLYRP4
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 52 percent done.
PGM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.304220e-02	ci left: 4.435078e-01	ci right 4.631194e-01	k: 4533	n:10000
Cons ci ratio: 2.880677e-02	ci left: 6.398548e-01	ci right 6.586581e-01	k: 6493	n:10000
KS ci ratio: 5.291978e-02	ci left: 3.448197e-01	ci right 3.636653e-01	k: 3542	n:10000
PGM1   10000 perm   2 sec   (6081 perm/sec)   p_kst 3.542000e-01   p_cons 6.493000e-01   p_joint 4.533000e-01

Outputting figure to mutsig2_images.part000000000130/PGM1.4_2037_10000_0.3542_0.6493_0.4533.png
                gene_name: PGM1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 54 percent done.
PGR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.603324e-01	ci left: 5.186203e-02	ci right 6.099852e-02	k: 563	n:10000
Cons ci ratio: 6.577260e-02	ci left: 2.534019e-01	ci right 2.707369e-01	k: 2620	n:10000
KS ci ratio: 2.413489e-01	ci left: 2.259324e-02	ci right 2.888717e-02	k: 256	n:10000
PGR   10000 perm   2 sec   (5185 perm/sec)   p_kst 2.560000e-02   p_cons 2.620000e-01   p_joint 5.630000e-02

Joint ci ratio: 1.741732e-01	ci left: 2.254539e-02	ci right 2.689429e-02	k: 493	n:20000
Cons ci ratio: 4.583879e-02	ci left: 2.615729e-01	ci right 2.738947e-01	k: 5354	n:20000
KS ci ratio: 1.756369e-01	ci left: 2.216252e-02	ci right 2.647729e-02	k: 485	n:20000
PGR   20000 perm   5 sec   (4003 perm/sec)   p_kst 2.425000e-02   p_cons 2.677000e-01   p_joint 2.465000e-02

Joint ci ratio: 8.957925e-02	ci left: 5.730604e-02	ci right 6.271289e-02	k: 1799	n:30000
Cons ci ratio: 3.732733e-02	ci left: 2.637561e-01	ci right 2.738221e-01	k: 8063	n:30000
KS ci ratio: 1.463140e-01	ci left: 2.165471e-02	ci right 2.510512e-02	k: 700	n:30000
PGR   30000 perm   7 sec   (4029 perm/sec)   p_kst 2.333333e-02   p_cons 2.687667e-01   p_joint 5.996667e-02

Joint ci ratio: 1.360745e-01	ci left: 1.894039e-02	ci right 2.172985e-02	k: 812	n:40000
Cons ci ratio: 3.140647e-02	ci left: 2.758771e-01	ci right 2.847048e-01	k: 11211	n:40000
KS ci ratio: 1.264124e-01	ci left: 2.198919e-02	ci right 2.498054e-02	k: 938	n:40000
PGR   40000 perm   10 sec   (3960 perm/sec)   p_kst 2.345000e-02   p_cons 2.802750e-01   p_joint 2.030000e-02

Joint ci ratio: 1.183218e-01	ci left: 2.020765e-02	ci right 2.276832e-02	k: 1073	n:50000
Cons ci ratio: 2.812985e-02	ci left: 2.757885e-01	ci right 2.836771e-01	k: 13986	n:50000
KS ci ratio: 1.137010e-01	ci left: 2.189823e-02	ci right 2.455752e-02	k: 1160	n:50000
PGR   50000 perm   13 sec   (3860 perm/sec)   p_kst 2.320000e-02   p_cons 2.797200e-01   p_joint 2.146000e-02

Joint ci ratio: 9.628262e-02	ci left: 2.558746e-02	ci right 2.819191e-02	k: 1612	n:60000
Cons ci ratio: 2.576566e-02	ci left: 2.747829e-01	ci right 2.819719e-01	k: 16702	n:60000
KS ci ratio: 1.028239e-01	ci left: 2.243262e-02	ci right 2.488042e-02	k: 1418	n:60000
PGR   60000 perm   15 sec   (3883 perm/sec)   p_kst 2.363333e-02   p_cons 2.783667e-01   p_joint 2.686667e-02

Joint ci ratio: 8.375582e-02	ci left: 2.907054e-02	ci right 3.162573e-02	k: 2123	n:70000
Cons ci ratio: 2.393677e-02	ci left: 2.736727e-01	ci right 2.803172e-01	k: 19389	n:70000
KS ci ratio: 9.746676e-02	ci left: 2.148378e-02	ci right 2.369889e-02	k: 1580	n:70000
PGR   70000 perm   18 sec   (3803 perm/sec)   p_kst 2.257143e-02   p_cons 2.769857e-01   p_joint 3.032857e-02

Outputting figure to mutsig2_images.part000000000130/PGR.4_2834_70000_0.022571_0.27699_0.030329.png
                gene_name: PGR
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 56 percent done.
PHF16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.133863e-02	ci left: 3.587363e-01	ci right 3.777405e-01	k: 3682	n:10000
Cons ci ratio: 1.425851e-02	ci left: 8.767431e-01	ci right 8.894328e-01	k: 8832	n:10000
KS ci ratio: 6.265710e-02	ci left: 2.724030e-01	ci right 2.901245e-01	k: 2812	n:10000
PHF16   10000 perm   2 sec   (5446 perm/sec)   p_kst 2.812000e-01   p_cons 8.832000e-01   p_joint 3.682000e-01

Outputting figure to mutsig2_images.part000000000130/PHF16.4_2512_10000_0.2812_0.8832_0.3682.png
                gene_name: PHF16
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 57 percent done.
PHF23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.939167e-02	ci left: 1.881605e-01	ci right 2.038170e-01	k: 1959	n:10000
Cons ci ratio: 3.457387e-02	ci left: 5.526098e-01	ci right 5.721538e-01	k: 5624	n:10000
KS ci ratio: 1.185861e-01	ci left: 9.262972e-02	ci right 1.044053e-01	k: 984	n:10000
PHF23   10000 perm   2 sec   (5352 perm/sec)   p_kst 9.840000e-02   p_cons 5.624000e-01   p_joint 1.959000e-01

Joint ci ratio: 5.144298e-02	ci left: 2.191785e-01	ci right 2.308016e-01	k: 4499	n:20000
Cons ci ratio: 2.445142e-02	ci left: 5.554409e-01	ci right 5.692409e-01	k: 11247	n:20000
KS ci ratio: 8.024300e-02	ci left: 1.023063e-01	ci right 1.109084e-01	k: 2131	n:20000
PHF23   20000 perm   4 sec   (4967 perm/sec)   p_kst 1.065500e-01   p_cons 5.623500e-01   p_joint 2.249500e-01

Outputting figure to mutsig2_images.part000000000130/PHF23.4_1232_20000_0.10655_0.56235_0.22495.png
                gene_name: PHF23
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 59 percent done.
PHTF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
Cons ci ratio: 1.219806e-01	ci left: 8.786290e-02	ci right 9.937509e-02	k: 935	n:10000
KS ci ratio: 1.573961e-01	ci left: 5.378678e-02	ci right 6.307254e-02	k: 583	n:10000
PHTF2   10000 perm   2 sec   (5529 perm/sec)   p_kst 5.830000e-02   p_cons 9.350000e-02   p_joint 1.050000e-01

Joint ci ratio: 9.741266e-02	ci left: 7.124000e-02	ci right 7.858416e-02	k: 1497	n:20000
Cons ci ratio: 8.687077e-02	ci left: 8.837200e-02	ci right 9.644695e-02	k: 1847	n:20000
KS ci ratio: 1.142902e-01	ci left: 5.236672e-02	ci right 5.876326e-02	k: 1110	n:20000
PHTF2   20000 perm   4 sec   (5006 perm/sec)   p_kst 5.550000e-02   p_cons 9.235000e-02   p_joint 7.485000e-02

Joint ci ratio: 1.036576e-01	ci left: 4.313673e-02	ci right 4.788512e-02	k: 1364	n:30000
Cons ci ratio: 7.044125e-02	ci left: 9.026120e-02	ci right 9.688441e-02	k: 2806	n:30000
KS ci ratio: 9.286185e-02	ci left: 5.345727e-02	ci right 5.869579e-02	k: 1681	n:30000
PHTF2   30000 perm   6 sec   (4791 perm/sec)   p_kst 5.603333e-02   p_cons 9.353333e-02   p_joint 4.546667e-02

Joint ci ratio: 1.093529e-01	ci left: 2.942048e-02	ci right 3.284804e-02	k: 1244	n:40000
Cons ci ratio: 6.110022e-02	ci left: 9.044214e-02	ci right 9.616706e-02	k: 3731	n:40000
KS ci ratio: 8.016886e-02	ci left: 5.413449e-02	ci right 5.868017e-02	k: 2255	n:40000
PHTF2   40000 perm   9 sec   (4652 perm/sec)   p_kst 5.637500e-02   p_cons 9.327500e-02   p_joint 3.110000e-02

Joint ci ratio: 9.349981e-02	ci left: 3.236994e-02	ci right 3.556446e-02	k: 1697	n:50000
Cons ci ratio: 5.432292e-02	ci left: 9.175200e-02	ci right 9.689521e-02	k: 4715	n:50000
KS ci ratio: 7.197625e-02	ci left: 5.398085e-02	ci right 5.803090e-02	k: 2799	n:50000
PHTF2   50000 perm   11 sec   (4541 perm/sec)   p_kst 5.598000e-02   p_cons 9.430000e-02   p_joint 3.394000e-02

Outputting figure to mutsig2_images.part000000000130/PHTF2.4_2382_50000_0.05598_0.0943_0.03394.png
                gene_name: PHTF2
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.032 
    ci_joint_bounds_right: 0.036 

Current progress: 60 percent done.
PIAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.641806e-02	ci left: 4.065144e-01	ci right 4.259345e-01	k: 4162	n:10000
Cons ci ratio: 9.503224e-02	ci left: 1.384471e-01	ci right 1.523602e-01	k: 1453	n:10000
KS ci ratio: 2.496038e-02	ci left: 7.025094e-01	ci right 7.203673e-01	k: 7115	n:10000
PIAS1   10000 perm   2 sec   (5854 perm/sec)   p_kst 7.115000e-01   p_cons 1.453000e-01   p_joint 4.162000e-01

Outputting figure to mutsig2_images.part000000000130/PIAS1.4_2012_10000_0.7115_0.1453_0.4162.png
                gene_name: PIAS1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 62 percent done.
PGK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.347016e-02	ci left: 4.386187e-01	ci right 4.582113e-01	k: 4484	n:10000
Cons ci ratio: 1.475779e-01	ci left: 6.101761e-02	ci right 7.083710e-02	k: 658	n:10000
KS ci ratio: 3.035478e-02	ci left: 6.155265e-01	ci right 6.346006e-01	k: 6251	n:10000
PGK1   10000 perm   2 sec   (6334 perm/sec)   p_kst 6.251000e-01   p_cons 6.580000e-02   p_joint 4.484000e-01

Joint ci ratio: 2.566646e-02	ci left: 5.314107e-01	ci right 5.452781e-01	k: 10767	n:20000
Cons ci ratio: 1.010309e-01	ci left: 6.645278e-02	ci right 7.357284e-02	k: 1399	n:20000
KS ci ratio: 2.169469e-02	ci left: 6.133313e-01	ci right 6.268338e-01	k: 12402	n:20000
PGK1   20000 perm   4 sec   (5627 perm/sec)   p_kst 6.201000e-01   p_cons 6.995000e-02   p_joint 5.383500e-01

Joint ci ratio: 2.769950e-02	ci left: 3.947489e-01	ci right 4.058704e-01	k: 12009	n:30000
Cons ci ratio: 8.374221e-02	ci left: 6.520923e-02	ci right 7.094143e-02	k: 2041	n:30000
KS ci ratio: 1.799581e-02	ci left: 6.070935e-01	ci right 6.181514e-01	k: 18379	n:30000
PGK1   30000 perm   6 sec   (5397 perm/sec)   p_kst 6.126333e-01   p_cons 6.803333e-02   p_joint 4.003000e-01

Outputting figure to mutsig2_images.part000000000130/PGK1.3_1298_30000_0.61263_0.068033_0.4003.png
                gene_name: PGK1
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 63 percent done.
PGLYRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.069242e-02	ci left: 6.103023e-01	ci right 6.294278e-01	k: 6199	n:10000
Cons ci ratio: 6.760682e-02	ci left: 2.430195e-01	ci right 2.601254e-01	k: 2515	n:10000
KS ci ratio: 2.759606e-02	ci left: 6.592760e-01	ci right 6.778257e-01	k: 6686	n:10000
PGLYRP1   10000 perm   2 sec   (6665 perm/sec)   p_kst 6.686000e-01   p_cons 2.515000e-01   p_joint 6.199000e-01

Outputting figure to mutsig2_images.part000000000130/PGLYRP1.3_603_10000_0.6686_0.2515_0.6199.png
                gene_name: PGLYRP1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 65 percent done.
PGPEP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.291031e-02	ci left: 8.962104e-01	ci right 9.079542e-01	k: 9022	n:10000
Cons ci ratio: 2.306618e-02	ci left: 7.341133e-01	ci right 7.513451e-01	k: 7428	n:10000
KS ci ratio: 2.838430e-02	ci left: 6.465950e-01	ci right 6.653141e-01	k: 6560	n:10000
PGPEP1L   10000 perm   1 sec   (6851 perm/sec)   p_kst 6.560000e-01   p_cons 7.428000e-01   p_joint 9.022000e-01

Outputting figure to mutsig2_images.part000000000130/PGPEP1L.3_607_10000_0.656_0.7428_0.9022.png
                gene_name: PGPEP1L
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 67 percent done.
PHF15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.544741e-02	ci left: 6.944402e-01	ci right 7.124411e-01	k: 7035	n:10000
Cons ci ratio: 4.316395e-02	ci left: 4.421108e-01	ci right 4.617172e-01	k: 4519	n:10000
KS ci ratio: 2.991605e-02	ci left: 6.223600e-01	ci right 6.413631e-01	k: 6319	n:10000
PHF15   10000 perm   2 sec   (5798 perm/sec)   p_kst 6.319000e-01   p_cons 4.519000e-01   p_joint 7.035000e-01

Outputting figure to mutsig2_images.part000000000130/PHF15.3_2413_10000_0.6319_0.4519_0.7035.png
                gene_name: PHF15
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 68 percent done.
PHKG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.268807e-02	ci left: 2.170439e-01	ci right 2.335164e-01	k: 2252	n:10000
Cons ci ratio: 2.697569e-02	ci left: 6.693457e-01	ci right 6.877502e-01	k: 6786	n:10000
KS ci ratio: 1.012706e-01	ci left: 1.236626e-01	ci right 1.369535e-01	k: 1302	n:10000
PHKG2   10000 perm   1 sec   (6897 perm/sec)   p_kst 1.302000e-01   p_cons 6.786000e-01   p_joint 2.252000e-01

Joint ci ratio: 5.466876e-02	ci left: 1.988789e-01	ci right 2.101071e-01	k: 4089	n:20000
Cons ci ratio: 1.900979e-02	ci left: 6.735848e-01	ci right 6.865628e-01	k: 13602	n:20000
KS ci ratio: 7.191211e-02	ci left: 1.246790e-01	ci right 1.340291e-01	k: 2586	n:20000
PHKG2   20000 perm   3 sec   (6061 perm/sec)   p_kst 1.293000e-01   p_cons 6.801000e-01   p_joint 2.044500e-01

Outputting figure to mutsig2_images.part000000000130/PHKG2.3_1303_20000_0.1293_0.6801_0.20445.png
                gene_name: PHKG2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 70 percent done.
PHYHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.100724e-02	ci left: 4.675680e-01	ci right 4.872452e-01	k: 4774	n:10000
Cons ci ratio: 5.481118e-02	ci left: 3.290250e-01	ci right 3.476693e-01	k: 3383	n:10000
KS ci ratio: 4.171224e-02	ci left: 4.590794e-01	ci right 4.787387e-01	k: 4689	n:10000
PHYHD1   10000 perm   2 sec   (6639 perm/sec)   p_kst 4.689000e-01   p_cons 3.383000e-01   p_joint 4.774000e-01

Outputting figure to mutsig2_images.part000000000130/PHYHD1.3_960_10000_0.4689_0.3383_0.4774.png
                gene_name: PHYHD1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 71 percent done.
PHYHIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.800946e-02	ci left: 1.311004e-01	ci right 1.447113e-01	k: 1378	n:10000
Cons ci ratio: 2.344190e-01	ci left: 2.400584e-02	ci right 3.047352e-02	k: 271	n:10000
KS ci ratio: 1.716727e-02	ci left: 8.317498e-01	ci right 8.462521e-01	k: 8391	n:10000
PHYHIP   10000 perm   2 sec   (5532 perm/sec)   p_kst 8.391000e-01   p_cons 2.710000e-02   p_joint 1.378000e-01

Joint ci ratio: 5.159835e-02	ci left: 2.181382e-01	ci right 2.297421e-01	k: 4478	n:20000
Cons ci ratio: 1.670300e-01	ci left: 2.455782e-02	ci right 2.908116e-02	k: 535	n:20000
KS ci ratio: 1.228870e-02	ci left: 8.305415e-01	ci right 8.408607e-01	k: 16715	n:20000
PHYHIP   20000 perm   4 sec   (5291 perm/sec)   p_kst 8.357500e-01   p_cons 2.675000e-02   p_joint 2.239000e-01

Joint ci ratio: 4.731409e-02	ci left: 1.817759e-01	ci right 1.906182e-01	k: 5585	n:30000
Cons ci ratio: 1.364677e-01	ci left: 2.493733e-02	ci right 2.862175e-02	k: 802	n:30000
KS ci ratio: 1.006700e-02	ci left: 8.305824e-01	ci right 8.390194e-01	k: 25045	n:30000
PHYHIP   30000 perm   6 sec   (5167 perm/sec)   p_kst 8.348333e-01   p_cons 2.673333e-02   p_joint 1.861667e-01

Joint ci ratio: 4.012680e-02	ci left: 1.887454e-01	ci right 1.964992e-01	k: 7704	n:40000
Cons ci ratio: 1.179400e-01	ci left: 2.528783e-02	ci right 2.848135e-02	k: 1074	n:40000
KS ci ratio: 8.746119e-03	ci left: 8.302665e-01	ci right 8.375849e-01	k: 33358	n:40000
PHYHIP   40000 perm   8 sec   (5063 perm/sec)   p_kst 8.339500e-01   p_cons 2.685000e-02   p_joint 1.926000e-01

Joint ci ratio: 2.997559e-02	ci left: 2.510247e-01	ci right 2.586838e-01	k: 12742	n:50000
Cons ci ratio: 1.061298e-01	ci left: 2.514866e-02	ci right 2.798666e-02	k: 1327	n:50000
KS ci ratio: 7.845597e-03	ci left: 8.298426e-01	ci right 8.363987e-01	k: 41657	n:50000
PHYHIP   50000 perm   10 sec   (4962 perm/sec)   p_kst 8.331400e-01   p_cons 2.654000e-02   p_joint 2.548400e-01

Joint ci ratio: 3.212537e-02	ci left: 1.956129e-01	ci right 2.020163e-01	k: 11928	n:60000
Cons ci ratio: 9.668374e-02	ci left: 2.537589e-02	ci right 2.797017e-02	k: 1599	n:60000
KS ci ratio: 7.185765e-03	ci left: 8.292023e-01	ci right 8.351988e-01	k: 49933	n:60000
PHYHIP   60000 perm   12 sec   (4866 perm/sec)   p_kst 8.322167e-01   p_cons 2.665000e-02   p_joint 1.988000e-01

Outputting figure to mutsig2_images.part000000000130/PHYHIP.3_1009_60000_0.83222_0.02665_0.1988.png
                gene_name: PHYHIP
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.20 

Current progress: 73 percent done.
PHYHIPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.229455e-02	ci left: 4.521908e-01	ci right 4.718314e-01	k: 4620	n:10000
KS ci ratio: 2.647618e-02	ci left: 6.775056e-01	ci right 6.957856e-01	k: 6867	n:10000
PHYHIPL   10000 perm   2 sec   (6281 perm/sec)   p_kst 6.867000e-01   p_cons 4.620000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHYHIPL.3_1183_10000_0.6867_0.462_1.png
                gene_name: PHYHIPL
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
PGF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.407617e-03	ci left: 9.518996e-01	ci right 9.600321e-01	k: 9561	n:10000
Cons ci ratio: 2.325328e-02	ci left: 7.309807e-01	ci right 7.482795e-01	k: 7397	n:10000
KS ci ratio: 2.280672e-02	ci left: 7.384593e-01	ci right 7.555965e-01	k: 7471	n:10000
PGF   10000 perm   1 sec   (7358 perm/sec)   p_kst 7.471000e-01   p_cons 7.397000e-01   p_joint 9.561000e-01

Outputting figure to mutsig2_images.part000000000130/PGF.2_541_10000_0.7471_0.7397_0.9561.png
                gene_name: PGF
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 76 percent done.
PGGT1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.167040e-02	ci left: 4.595787e-01	ci right 4.792392e-01	k: 4694	n:10000
Cons ci ratio: 3.297882e-02	ci left: 5.757708e-01	ci right 5.951794e-01	k: 5855	n:10000
KS ci ratio: 8.478738e-02	ci left: 1.685812e-01	ci right 1.836080e-01	k: 1760	n:10000
PGGT1B   10000 perm   1 sec   (6668 perm/sec)   p_kst 1.760000e-01   p_cons 5.855000e-01   p_joint 4.694000e-01

Outputting figure to mutsig2_images.part000000000130/PGGT1B.2_1170_10000_0.176_0.5855_0.4694.png
                gene_name: PGGT1B
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 78 percent done.
PGLYRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.662392e-02	ci left: 6.750875e-01	ci right 6.934051e-01	k: 6843	n:10000
Cons ci ratio: 2.409930e-02	ci left: 7.168405e-01	ci right 7.344279e-01	k: 7257	n:10000
KS ci ratio: 8.745193e-02	ci left: 1.599340e-01	ci right 1.746603e-01	k: 1672	n:10000
PGLYRP2   10000 perm   2 sec   (6362 perm/sec)   p_kst 1.672000e-01   p_cons 7.257000e-01   p_joint 6.843000e-01

Outputting figure to mutsig2_images.part000000000130/PGLYRP2.2_1751_10000_0.1672_0.7257_0.6843.png
                gene_name: PGLYRP2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 79 percent done.
PGM2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.024168e-02	ci left: 7.813762e-01	ci right 7.974549e-01	k: 7895	n:10000
Cons ci ratio: 1.850394e-02	ci left: 8.100922e-01	ci right 8.253223e-01	k: 8178	n:10000
KS ci ratio: 3.494759e-02	ci left: 5.472988e-01	ci right 5.668679e-01	k: 5571	n:10000
PGM2L1   10000 perm   2 sec   (6277 perm/sec)   p_kst 5.571000e-01   p_cons 8.178000e-01   p_joint 7.895000e-01

Outputting figure to mutsig2_images.part000000000130/PGM2L1.2_1925_10000_0.5571_0.8178_0.7895.png
                gene_name: PGM2L1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 81 percent done.
PHACTR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.815202e-02	ci left: 6.503180e-01	ci right 6.689889e-01	k: 6597	n:10000
Cons ci ratio: 4.794086e-02	ci left: 3.909759e-01	ci right 4.102820e-01	k: 4006	n:10000
KS ci ratio: 2.382108e-02	ci left: 7.214854e-01	ci right 7.389803e-01	k: 7303	n:10000
PHACTR2   10000 perm   2 sec   (6196 perm/sec)   p_kst 7.303000e-01   p_cons 4.006000e-01   p_joint 6.597000e-01

Outputting figure to mutsig2_images.part000000000130/PHACTR2.2_2007_10000_0.7303_0.4006_0.6597.png
                gene_name: PHACTR2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 83 percent done.
PHB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.002699e-02	ci left: 1.856990e-01	ci right 2.012800e-01	k: 1934	n:10000
Cons ci ratio: 1.019918e-01	ci left: 1.220977e-01	ci right 1.353194e-01	k: 1286	n:10000
KS ci ratio: 3.252572e-02	ci left: 5.824925e-01	ci right 6.018537e-01	k: 5922	n:10000
PHB   10000 perm   1 sec   (6897 perm/sec)   p_kst 5.922000e-01   p_cons 1.286000e-01   p_joint 1.934000e-01

Joint ci ratio: 5.095377e-02	ci left: 2.224977e-01	ci right 2.341814e-01	k: 4566	n:20000
Cons ci ratio: 7.218476e-02	ci left: 1.238421e-01	ci right 1.331661e-01	k: 2569	n:20000
KS ci ratio: 2.294097e-02	ci left: 5.866044e-01	ci right 6.002684e-01	k: 11869	n:20000
PHB   20000 perm   3 sec   (6103 perm/sec)   p_kst 5.934500e-01   p_cons 1.284500e-01   p_joint 2.283000e-01

Outputting figure to mutsig2_images.part000000000130/PHB.2_843_20000_0.59345_0.12845_0.2283.png
                gene_name: PHB
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 84 percent done.
PHC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.498783e-02	ci left: 8.658043e-01	ci right 8.789779e-01	k: 8725	n:10000
Cons ci ratio: 2.638395e-02	ci left: 6.790170e-01	ci right 6.972732e-01	k: 6882	n:10000
KS ci ratio: 5.788665e-02	ci left: 3.052063e-01	ci right 3.235020e-01	k: 3143	n:10000
PHC3   10000 perm   2 sec   (5748 perm/sec)   p_kst 3.143000e-01   p_cons 6.882000e-01   p_joint 8.725000e-01

Outputting figure to mutsig2_images.part000000000130/PHC3.2_3048_10000_0.3143_0.6882_0.8725.png
                gene_name: PHC3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 86 percent done.
PHF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.671973e-01	ci left: 4.772935e-02	ci right 5.653387e-02	k: 520	n:10000
Cons ci ratio: 1.779024e-01	ci left: 4.216838e-02	ci right 5.049848e-02	k: 462	n:10000
KS ci ratio: 3.997784e-02	ci left: 4.802562e-01	ci right 4.999496e-01	k: 4901	n:10000
PHF10   10000 perm   1 sec   (6748 perm/sec)   p_kst 4.901000e-01   p_cons 4.620000e-02   p_joint 5.200000e-02

Joint ci ratio: 1.264445e-01	ci left: 4.294396e-02	ci right 4.878899e-02	k: 916	n:20000
Cons ci ratio: 1.271729e-01	ci left: 4.245914e-02	ci right 4.827396e-02	k: 906	n:20000
KS ci ratio: 2.812694e-02	ci left: 4.856977e-01	ci right 4.996044e-01	k: 9853	n:20000
PHF10   20000 perm   3 sec   (5998 perm/sec)   p_kst 4.926500e-01   p_cons 4.530000e-02   p_joint 4.580000e-02

Joint ci ratio: 1.111140e-01	ci left: 3.761587e-02	ci right 4.207381e-02	k: 1194	n:30000
Cons ci ratio: 1.056181e-01	ci left: 4.157680e-02	ci right 4.624538e-02	k: 1316	n:30000
KS ci ratio: 2.290267e-02	ci left: 4.883599e-01	ci right 4.997079e-01	k: 14821	n:30000
PHF10   30000 perm   5 sec   (5714 perm/sec)   p_kst 4.940333e-01   p_cons 4.386667e-02   p_joint 3.980000e-02

Joint ci ratio: 9.271780e-02	ci left: 4.078832e-02	ci right 4.477840e-02	k: 1710	n:40000
Cons ci ratio: 9.117002e-02	ci left: 4.215749e-02	ci right 4.620901e-02	k: 1766	n:40000
KS ci ratio: 1.973299e-02	ci left: 4.916881e-01	ci right 5.015124e-01	k: 19864	n:40000
PHF10   40000 perm   7 sec   (5523 perm/sec)   p_kst 4.966000e-01   p_cons 4.415000e-02   p_joint 4.275000e-02

Outputting figure to mutsig2_images.part000000000130/PHF10.2_1545_40000_0.4966_0.04415_0.04275.png
                gene_name: PHF10
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.045 

Current progress: 87 percent done.
PHF11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.714180e-02	ci left: 3.990427e-01	ci right 4.184105e-01	k: 4087	n:10000
Cons ci ratio: 1.491591e-01	ci left: 5.976289e-02	ci right 6.949263e-02	k: 645	n:10000
KS ci ratio: 4.757356e-02	ci left: 3.946604e-01	ci right 4.139954e-01	k: 4043	n:10000
PHF11   10000 perm   1 sec   (6914 perm/sec)   p_kst 4.043000e-01   p_cons 6.450000e-02   p_joint 4.087000e-01

Joint ci ratio: 6.396297e-02	ci left: 1.530194e-01	ci right 1.631802e-01	k: 3161	n:20000
Cons ci ratio: 1.069412e-01	ci left: 5.957399e-02	ci right 6.635376e-02	k: 1258	n:20000
KS ci ratio: 3.365675e-02	ci left: 3.972885e-01	ci right 4.109394e-01	k: 8082	n:20000
PHF11   20000 perm   3 sec   (6106 perm/sec)   p_kst 4.041000e-01   p_cons 6.290000e-02   p_joint 1.580500e-01

Joint ci ratio: 3.218028e-02	ci left: 3.255754e-01	ci right 3.362574e-01	k: 9927	n:30000
Cons ci ratio: 9.140284e-02	ci left: 5.512030e-02	ci right 6.043241e-02	k: 1732	n:30000
KS ci ratio: 2.731859e-02	ci left: 4.014001e-01	ci right 4.125512e-01	k: 12209	n:30000
PHF11   30000 perm   5 sec   (5784 perm/sec)   p_kst 4.069667e-01   p_cons 5.773333e-02   p_joint 3.309000e-01

Outputting figure to mutsig2_images.part000000000130/PHF11.2_1036_30000_0.40697_0.057733_0.3309.png
                gene_name: PHF11
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 89 percent done.
PHF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.803680e-02	ci left: 8.177134e-01	ci right 8.326966e-01	k: 8253	n:10000
Cons ci ratio: 3.740117e-02	ci left: 5.135553e-01	ci right 5.332311e-01	k: 5234	n:10000
KS ci ratio: 2.403880e-02	ci left: 7.178502e-01	ci right 7.354176e-01	k: 7267	n:10000
PHF12   10000 perm   2 sec   (5786 perm/sec)   p_kst 7.267000e-01   p_cons 5.234000e-01   p_joint 8.253000e-01

Outputting figure to mutsig2_images.part000000000130/PHF12.2_3101_10000_0.7267_0.5234_0.8253.png
                gene_name: PHF12
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 90 percent done.
PHF19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.400364e-02	ci left: 2.109269e-01	ci right 2.272370e-01	k: 2190	n:10000
Cons ci ratio: 2.420449e-03	ci left: 9.949036e-01	ci right 9.973936e-01	k: 9963	n:10000
KS ci ratio: 1.343944e-01	ci left: 7.310807e-02	ci right 8.373906e-02	k: 783	n:10000
PHF19   10000 perm   2 sec   (6173 perm/sec)   p_kst 7.830000e-02   p_cons 9.963000e-01   p_joint 2.190000e-01

Joint ci ratio: 5.266004e-02	ci left: 2.112047e-01	ci right 2.226777e-01	k: 4338	n:20000
Cons ci ratio: 1.700389e-03	ci left: 9.953572e-01	ci right 9.970936e-01	k: 19926	n:20000
KS ci ratio: 9.298930e-02	ci left: 7.779311e-02	ci right 8.542905e-02	k: 1631	n:20000
PHF19   20000 perm   4 sec   (5542 perm/sec)   p_kst 8.155000e-02   p_cons 9.963000e-01   p_joint 2.169000e-01

Outputting figure to mutsig2_images.part000000000130/PHF19.2_1958_20000_0.08155_0.9963_0.2169.png
                gene_name: PHF19
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.085 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 92 percent done.
PHGDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.405012e-02	ci left: 5.601272e-01	ci right 5.796320e-01	k: 5699	n:10000
Cons ci ratio: 6.616595e-02	ci left: 2.511271e-01	ci right 2.684130e-01	k: 2597	n:10000
KS ci ratio: 3.970690e-02	ci left: 4.836541e-01	ci right 5.033497e-01	k: 4935	n:10000
PHGDH   10000 perm   2 sec   (6521 perm/sec)   p_kst 4.935000e-01   p_cons 2.597000e-01   p_joint 5.699000e-01

Outputting figure to mutsig2_images.part000000000130/PHGDH.2_1650_10000_0.4935_0.2597_0.5699.png
                gene_name: PHGDH
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 94 percent done.
PHYH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.642083e-02	ci left: 6.784124e-01	ci right 6.966782e-01	k: 6876	n:10000
KS ci ratio: 8.924358e-03	ci left: 9.463777e-01	ci right 9.549573e-01	k: 9508	n:10000
PHYH   10000 perm   1 sec   (6827 perm/sec)   p_kst 9.508000e-01   p_cons 6.876000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PHYH.2_1053_10000_0.9508_0.6876_1.png
                gene_name: PHYH
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
PI4K2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.922036e-02	ci left: 7.983141e-01	ci right 8.139072e-01	k: 8062	n:10000
KS ci ratio: 2.382713e-02	ci left: 7.213844e-01	ci right 7.388814e-01	k: 7302	n:10000
PI4K2A   10000 perm   2 sec   (6653 perm/sec)   p_kst 7.302000e-01   p_cons 8.062000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PI4K2A.2_1476_10000_0.7302_0.8062_1.png
                gene_name: PI4K2A
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
PI4K2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.197654e-02	ci left: 5.907217e-01	ci right 6.100198e-01	k: 6004	n:10000
KS ci ratio: 9.795407e-03	ci left: 9.365128e-01	ci right 9.458281e-01	k: 9413	n:10000
PI4K2B   10000 perm   1 sec   (6856 perm/sec)   p_kst 9.413000e-01   p_cons 6.004000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000130/PI4K2B.2_1486_10000_0.9413_0.6004_1.png
                gene_name: PI4K2B
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
PI4KB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.740181e-02	ci left: 8.279846e-01	ci right 8.426195e-01	k: 8354	n:10000
Cons ci ratio: 2.608320e-02	ci left: 6.839552e-01	ci right 7.021322e-01	k: 6931	n:10000
KS ci ratio: 3.293807e-02	ci left: 5.763726e-01	ci right 5.957772e-01	k: 5861	n:10000
PI4KB   10000 perm   2 sec   (6083 perm/sec)   p_kst 5.861000e-01   p_cons 6.931000e-01   p_joint 8.354000e-01

Outputting figure to mutsig2_images.part000000000130/PI4KB.2_2535_10000_0.5861_0.6931_0.8354.png
                gene_name: PI4KB
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000130
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 130 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1552>
Subject: Job 9894078: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1552>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000131> was used as the working directory.
Started at Sat Oct  6 00:24:37 2012
Results reported at Sat Oct  6 04:05:10 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000131.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000131.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 131  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000131.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  14091.17 sec.
    Max Memory :      3661 MB
    Max Swap   :      6012 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
131
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 131
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 131: processing genes 11721 - 11810
Calculating significance of each gene.
Using projection method.
11721	PIAS2	6.307368e-01
11722	PIAS3	2.258653e-01
11723	PIAS4	8.840433e-01
11724	PIBF1	8.319636e-01
11725	PICALM	7.458616e-01
11726	PICK1	8.012423e-01
11727	PID1	4.789019e-01
In gene PIF1 the following bins exceed PROBCAP:
    COAD-AA-A00K	categ 6	N = 1372    n = 1	mu =   5.86e-07
11728	PIF1	7.622932e-01
11729	PIGA	7.921578e-01
11730	PIGB	7.510063e-01
11731	PIGC	1
11732	PIGF	1
11733	PIGG	9.785579e-01
11734	PIGH	1
11735	PIGK	1.544349e-01
11736	PIGL	1
11737	PIGM	7.516651e-01
11738	PIGN	8.541284e-01
11739	PIGO	9.407654e-01
11740	PIGP	1
11741	PIGQ	9.522135e-01
11742	PIGR	2.764298e-01
11743	PIGS	6.753727e-01
11744	PIGT	6.613154e-01
11745	PIGU	6.589621e-01
11746	PIGV	7.678395e-01
11747	PIGW	8.260726e-01
11748	PIGX	2.575056e-01
11749	PIGY	1
11750	PIGZ	1
11751	PIH1D1	9.063738e-01
11752	PIH1D2	2.394316e-01
In gene PIK3AP1 the following bins exceed PROBCAP:
    COAD-AA-3560	categ 6	N = 2355    n = 1	mu =   2.76e-07
11753	PIK3AP1	9.147202e-01
11754	PIK3C2A	6.978009e-01
11755	PIK3C2B	5.094324e-01
11756	PIK3C2G	3.411848e-01
11757	PIK3C3	2.621969e-01
11758	PIK3CA	0
11759	PIK3CB	9.141052e-01
11760	PIK3CD	9.500713e-01
11761	PIK3CG	3.288531e-02
11762	PIK3IP1	2.702514e-01
11763	PIK3R1	5.874045e-04
11764	PIK3R2	8.566895e-01
11765	PIK3R3	5.346090e-01
11766	PIK3R4	2.802467e-01
11767	PIK3R5	9.861178e-01
11768	PIK3R6	7.776987e-01
In gene PIKFYVE the following bins exceed PROBCAP:
    READ-AG-3580	categ 6	N = 6472    n = 1	mu =   1.72e-07
11769	PIKFYVE	6.510670e-02
11770	PILRA	5.692765e-01
11771	PILRB	1.948369e-01
11772	PIM1	8.791956e-01
11773	PIM2	7.779873e-01
11774	PIM3	1
11775	PIN1	3.415335e-01
11776	PIN4	1
11777	PINK1	5.525676e-01
11778	PINX1	1.684280e-01
11779	PION	8.369582e-01
11780	PIP	1.551069e-01
11781	PIP4K2A	6.820277e-01
11782	PIP4K2B	6.659999e-01
11783	PIP4K2C	4.806657e-01
11784	PIP5K1A	4.385280e-01
11785	PIP5K1B	7.700061e-01
11786	PIP5K1C	2.821299e-01
11787	PIP5KL1	1
11788	PIPOX	1.682701e-01
11789	PIR	4.785008e-01
11790	PIRT	4.461882e-01
11791	PISD	6.305543e-01
11792	PITPNA	5.183244e-01
11793	PITPNB	4.696022e-01
11794	PITPNC1	4.164001e-01
11795	PITPNM1	1
11796	PITPNM2	9.223377e-01
11797	PITPNM3	3.881161e-01
11798	PITRM1	5.354027e-01
11799	PITX1	8.642431e-01
11800	PITX2	5.345035e-01
11801	PITX3	1
11802	PIWIL1	2.535225e-01
11803	PIWIL2	1.688030e-01
11804	PIWIL3	7.469007e-02
11805	PIWIL4	1.401883e-01
11806	PJA1	1.984095e-01
11807	PJA2	2.385857e-01
11808	PKD1	1
11809	PKD1L1	4.353297e-01
11810	PKD1L2	5.246113e-01
Done

Running MutSig 2:
Scatter job 131: processing genes 11721 - 11810
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PIK3CA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
PIK3CA   10000 perm   3 sec   (2971 perm/sec)   p_kst 1.600000e-03   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KS ci ratio: 8.168860e-01	ci left: 6.894885e-04	ci right 1.664942e-03	k: 22	n:20000
PIK3CA   20000 perm   13 sec   (1558 perm/sec)   p_kst 1.100000e-03   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KS ci ratio: 6.819977e-01	ci left: 7.297101e-04	ci right 1.505484e-03	k: 32	n:30000
PIK3CA   30000 perm   17 sec   (1803 perm/sec)   p_kst 1.066667e-03   p_cons 3.333333e-05   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
KS ci ratio: 5.596499e-01	ci left: 8.849137e-04	ci right 1.590715e-03	k: 48	n:40000
PIK3CA   40000 perm   20 sec   (1981 perm/sec)   p_kst 1.200000e-03   p_cons 2.500000e-05   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
KS ci ratio: 5.100343e-01	ci left: 8.809508e-04	ci right 1.499314e-03	k: 58	n:50000
PIK3CA   50000 perm   24 sec   (2106 perm/sec)   p_kst 1.160000e-03   p_cons 2.000000e-05   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KS ci ratio: 4.464350e-01	ci left: 9.981151e-04	ci right 1.585169e-03	k: 76	n:60000
PIK3CA   60000 perm   27 sec   (2188 perm/sec)   p_kst 1.266667e-03   p_cons 1.666667e-05   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.263148e+00	ci left: 3.460151e-06	ci right 1.032060e-04	k: 2	n:70000
KS ci ratio: 4.152520e-01	ci left: 1.008384e-03	ci right 1.548609e-03	k: 88	n:70000
PIK3CA   70000 perm   31 sec   (2244 perm/sec)   p_kst 1.257143e-03   p_cons 2.857143e-05   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.263156e+00	ci left: 3.027630e-06	ci right 9.030565e-05	k: 2	n:80000
KS ci ratio: 3.898058e-01	ci left: 1.017162e-03	ci right 1.520129e-03	k: 100	n:80000
PIK3CA   80000 perm   35 sec   (2280 perm/sec)   p_kst 1.250000e-03   p_cons 2.500000e-05   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 2.263163e+00	ci left: 2.691226e-06	ci right 8.027198e-05	k: 2	n:90000
KS ci ratio: 3.606266e-01	ci left: 1.075250e-03	ci right 1.557815e-03	k: 117	n:90000
PIK3CA   90000 perm   39 sec   (2306 perm/sec)   p_kst 1.300000e-03   p_cons 2.222222e-05   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.263168e+00	ci left: 2.422102e-06	ci right 7.224499e-05	k: 2	n:100000
KS ci ratio: 3.462588e-01	ci left: 1.058848e-03	ci right 1.510877e-03	k: 127	n:100000
PIK3CA   100000 perm   43 sec   (2319 perm/sec)   p_kst 1.270000e-03   p_cons 2.000000e-05   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 1.959955e+00	ci left: 5.624327e-06	ci right 7.970039e-05	k: 3	n:110000
KS ci ratio: 3.220037e-01	ci left: 1.129181e-03	ci right 1.570512e-03	k: 147	n:110000
PIK3CA   110000 perm   47 sec   (2329 perm/sec)   p_kst 1.336364e-03   p_cons 2.727273e-05   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 1.959959e+00	ci left: 5.155631e-06	ci right 7.305885e-05	k: 3	n:120000
KS ci ratio: 3.106689e-01	ci left: 1.119473e-03	ci right 1.538557e-03	k: 158	n:120000
PIK3CA   120000 perm   51 sec   (2332 perm/sec)   p_kst 1.316667e-03   p_cons 2.500000e-05   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 1.959962e+00	ci left: 4.759042e-06	ci right 6.743907e-05	k: 3	n:130000
KS ci ratio: 3.004525e-01	ci left: 1.111488e-03	ci right 1.511289e-03	k: 169	n:130000
PIK3CA   130000 perm   56 sec   (2331 perm/sec)   p_kst 1.300000e-03   p_cons 2.307692e-05   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 1.959965e+00	ci left: 4.419108e-06	ci right 6.262209e-05	k: 3	n:140000
KS ci ratio: 2.872363e-01	ci left: 1.137965e-03	ci right 1.526019e-03	k: 185	n:140000
PIK3CA   140000 perm   60 sec   (2325 perm/sec)   p_kst 1.321429e-03   p_cons 2.142857e-05   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 1.959967e+00	ci left: 4.124500e-06	ci right 5.844736e-05	k: 3	n:150000
KS ci ratio: 2.819853e-01	ci left: 1.105434e-03	ci right 1.474277e-03	k: 192	n:150000
PIK3CA   150000 perm   65 sec   (2320 perm/sec)   p_kst 1.280000e-03   p_cons 2.000000e-05   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 1.959969e+00	ci left: 3.866717e-06	ci right 5.479447e-05	k: 3	n:160000
KS ci ratio: 2.729426e-01	ci left: 1.111943e-03	ci right 1.469022e-03	k: 205	n:160000
PIK3CA   160000 perm   69 sec   (2311 perm/sec)   p_kst 1.281250e-03   p_cons 1.875000e-05   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 1.959971e+00	ci left: 3.639263e-06	ci right 5.157132e-05	k: 3	n:170000
KS ci ratio: 2.696956e-01	ci left: 1.073943e-03	ci right 1.414021e-03	k: 210	n:170000
PIK3CA   170000 perm   74 sec   (2301 perm/sec)   p_kst 1.235294e-03   p_cons 1.764706e-05   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 1.959973e+00	ci left: 3.437081e-06	ci right 4.870629e-05	k: 3	n:180000
KS ci ratio: 2.623392e-01	ci left: 1.076501e-03	ci right 1.406566e-03	k: 222	n:180000
PIK3CA   180000 perm   79 sec   (2278 perm/sec)   p_kst 1.233333e-03   p_cons 1.666667e-05   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 1.959974e+00	ci left: 3.256181e-06	ci right 4.614284e-05	k: 3	n:190000
KS ci ratio: 2.566496e-01	ci left: 1.069051e-03	ci right 1.388584e-03	k: 232	n:190000
PIK3CA   190000 perm   84 sec   (2257 perm/sec)   p_kst 1.221053e-03   p_cons 1.578947e-05   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 1.959976e+00	ci left: 3.093371e-06	ci right 4.383573e-05	k: 3	n:200000
KS ci ratio: 2.472723e-01	ci left: 1.099920e-03	ci right 1.414822e-03	k: 250	n:200000
PIK3CA   200000 perm   89 sec   (2236 perm/sec)   p_kst 1.250000e-03   p_cons 1.500000e-05   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 1.959977e+00	ci left: 2.946067e-06	ci right 4.174835e-05	k: 3	n:210000
KS ci ratio: 2.401978e-01	ci left: 1.114611e-03	ci right 1.423230e-03	k: 265	n:210000
PIK3CA   210000 perm   94 sec   (2223 perm/sec)   p_kst 1.261905e-03   p_cons 1.428571e-05   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 1.959978e+00	ci left: 2.812155e-06	ci right 3.985072e-05	k: 3	n:220000
KS ci ratio: 2.349569e-01	ci left: 1.115246e-03	ci right 1.416324e-03	k: 277	n:220000
PIK3CA   220000 perm   99 sec   (2212 perm/sec)   p_kst 1.259091e-03   p_cons 1.363636e-05   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 1.959979e+00	ci left: 2.689887e-06	ci right 3.811810e-05	k: 3	n:230000
KS ci ratio: 2.296486e-01	ci left: 1.119990e-03	ci right 1.414549e-03	k: 290	n:230000
PIK3CA   230000 perm   105 sec   (2199 perm/sec)   p_kst 1.260870e-03   p_cons 1.304348e-05   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 1.959980e+00	ci left: 2.577808e-06	ci right 3.652987e-05	k: 3	n:240000
KS ci ratio: 2.254282e-01	ci left: 1.116544e-03	ci right 1.404051e-03	k: 301	n:240000
PIK3CA   240000 perm   110 sec   (2185 perm/sec)   p_kst 1.254167e-03   p_cons 1.250000e-05   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 1.959980e+00	ci left: 2.474695e-06	ci right 3.506869e-05	k: 3	n:250000
KS ci ratio: 2.232247e-01	ci left: 1.094532e-03	ci right 1.373238e-03	k: 307	n:250000
PIK3CA   250000 perm   115 sec   (2171 perm/sec)   p_kst 1.228000e-03   p_cons 1.200000e-05   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 1.959981e+00	ci left: 2.379514e-06	ci right 3.371991e-05	k: 3	n:260000
KS ci ratio: 2.179787e-01	ci left: 1.106941e-03	ci right 1.381295e-03	k: 322	n:260000
PIK3CA   260000 perm   121 sec   (2157 perm/sec)   p_kst 1.238462e-03   p_cons 1.153846e-05   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 1.959982e+00	ci left: 2.291384e-06	ci right 3.247103e-05	k: 3	n:270000
KS ci ratio: 2.118346e-01	ci left: 1.132528e-03	ci right 1.404285e-03	k: 341	n:270000
PIK3CA   270000 perm   126 sec   (2141 perm/sec)   p_kst 1.262963e-03   p_cons 1.111111e-05   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 1.959983e+00	ci left: 2.209549e-06	ci right 3.131137e-05	k: 3	n:280000
KS ci ratio: 2.073357e-01	ci left: 1.142841e-03	ci right 1.410510e-03	k: 356	n:280000
PIK3CA   280000 perm   132 sec   (2126 perm/sec)   p_kst 1.271429e-03   p_cons 1.071429e-05   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 1.959983e+00	ci left: 2.133357e-06	ci right 3.023168e-05	k: 3	n:290000
KS ci ratio: 2.031118e-01	ci left: 1.152500e-03	ci right 1.416249e-03	k: 371	n:290000
PIK3CA   290000 perm   137 sec   (2112 perm/sec)   p_kst 1.279310e-03   p_cons 1.034483e-05   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 1.959984e+00	ci left: 2.062245e-06	ci right 2.922396e-05	k: 3	n:300000
KS ci ratio: 2.001744e-01	ci left: 1.148898e-03	ci right 1.407557e-03	k: 382	n:300000
PIK3CA   300000 perm   143 sec   (2098 perm/sec)   p_kst 1.273333e-03   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 1.959984e+00	ci left: 1.995721e-06	ci right 2.828126e-05	k: 3	n:310000
KS ci ratio: 1.981175e-01	ci left: 1.136356e-03	ci right 1.389244e-03	k: 390	n:310000
PIK3CA   310000 perm   149 sec   (2082 perm/sec)   p_kst 1.258065e-03   p_cons 9.677419e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 1.959985e+00	ci left: 1.933355e-06	ci right 2.739748e-05	k: 3	n:320000
KS ci ratio: 1.944226e-01	ci left: 1.145417e-03	ci right 1.395005e-03	k: 405	n:320000
PIK3CA   320000 perm   155 sec   (2067 perm/sec)   p_kst 1.265625e-03   p_cons 9.375000e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 1.959985e+00	ci left: 1.874768e-06	ci right 2.656726e-05	k: 3	n:330000
KS ci ratio: 1.904744e-01	ci left: 1.159742e-03	ci right 1.406726e-03	k: 422	n:330000
PIK3CA   330000 perm   161 sec   (2051 perm/sec)   p_kst 1.278788e-03   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 1.959986e+00	ci left: 1.819628e-06	ci right 2.578588e-05	k: 3	n:340000
KS ci ratio: 1.884810e-01	ci left: 1.150846e-03	ci right 1.393077e-03	k: 431	n:340000
PIK3CA   340000 perm   167 sec   (2036 perm/sec)   p_kst 1.267647e-03   p_cons 8.823529e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 1.959986e+00	ci left: 1.767638e-06	ci right 2.504915e-05	k: 3	n:350000
KS ci ratio: 1.867609e-01	ci left: 1.139748e-03	ci right 1.377205e-03	k: 439	n:350000
PIK3CA   350000 perm   173 sec   (2020 perm/sec)   p_kst 1.254286e-03   p_cons 8.571429e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 1.959986e+00	ci left: 1.718537e-06	ci right 2.435334e-05	k: 3	n:360000
KS ci ratio: 1.834543e-01	ci left: 1.150474e-03	ci right 1.385450e-03	k: 455	n:360000
PIK3CA   360000 perm   180 sec   (2005 perm/sec)   p_kst 1.263889e-03   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 1.959987e+00	ci left: 1.672090e-06	ci right 2.369515e-05	k: 3	n:370000
KS ci ratio: 1.797462e-01	ci left: 1.168398e-03	ci right 1.401687e-03	k: 474	n:370000
PIK3CA   370000 perm   186 sec   (1990 perm/sec)   p_kst 1.281081e-03   p_cons 8.108108e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 1.959987e+00	ci left: 1.628087e-06	ci right 2.307160e-05	k: 3	n:380000
KS ci ratio: 1.767926e-01	ci left: 1.177878e-03	ci right 1.408782e-03	k: 490	n:380000
PIK3CA   380000 perm   193 sec   (1971 perm/sec)   p_kst 1.289474e-03   p_cons 7.894737e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 1.959987e+00	ci left: 1.586342e-06	ci right 2.248002e-05	k: 3	n:390000
KS ci ratio: 1.741519e-01	ci left: 1.184448e-03	ci right 1.412808e-03	k: 505	n:390000
PIK3CA   390000 perm   199 sec   (1955 perm/sec)   p_kst 1.294872e-03   p_cons 7.692308e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 1.959988e+00	ci left: 1.546683e-06	ci right 2.191802e-05	k: 3	n:400000
KS ci ratio: 1.724568e-01	ci left: 1.178753e-03	ci right 1.403572e-03	k: 515	n:400000
PIK3CA   400000 perm   206 sec   (1940 perm/sec)   p_kst 1.287500e-03   p_cons 7.500000e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 1.959988e+00	ci left: 1.508959e-06	ci right 2.138344e-05	k: 3	n:410000
KS ci ratio: 1.703246e-01	ci left: 1.180350e-03	ci right 1.402404e-03	k: 528	n:410000
PIK3CA   410000 perm   213 sec   (1925 perm/sec)   p_kst 1.287805e-03   p_cons 7.317073e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 1.959988e+00	ci left: 1.473031e-06	ci right 2.087432e-05	k: 3	n:420000
KS ci ratio: 1.685813e-01	ci left: 1.177326e-03	ci right 1.396314e-03	k: 539	n:420000
PIK3CA   420000 perm   220 sec   (1911 perm/sec)   p_kst 1.283333e-03   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 1.959989e+00	ci left: 1.438775e-06	ci right 2.038887e-05	k: 3	n:430000
KS ci ratio: 1.678077e-01	ci left: 1.161084e-03	ci right 1.375960e-03	k: 544	n:430000
PIK3CA   430000 perm   227 sec   (1897 perm/sec)   p_kst 1.265116e-03   p_cons 6.976744e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 1.959989e+00	ci left: 1.406075e-06	ci right 1.992549e-05	k: 3	n:440000
KS ci ratio: 1.658414e-01	ci left: 1.163007e-03	ci right 1.375466e-03	k: 557	n:440000
PIK3CA   440000 perm   234 sec   (1883 perm/sec)   p_kst 1.265909e-03   p_cons 6.818182e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 1.959989e+00	ci left: 1.374829e-06	ci right 1.948270e-05	k: 3	n:450000
KS ci ratio: 1.636559e-01	ci left: 1.169122e-03	ci right 1.379606e-03	k: 572	n:450000
PIK3CA   450000 perm   241 sec   (1869 perm/sec)   p_kst 1.271111e-03   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 1.959989e+00	ci left: 1.344941e-06	ci right 1.905917e-05	k: 3	n:460000
KS ci ratio: 1.622467e-01	ci left: 1.164559e-03	ci right 1.372240e-03	k: 582	n:460000
PIK3CA   460000 perm   248 sec   (1856 perm/sec)   p_kst 1.265217e-03   p_cons 6.521739e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 1.959990e+00	ci left: 1.316326e-06	ci right 1.865366e-05	k: 3	n:470000
KS ci ratio: 1.603328e-01	ci left: 1.168366e-03	ci right 1.374031e-03	k: 596	n:470000
PIK3CA   470000 perm   256 sec   (1837 perm/sec)   p_kst 1.268085e-03   p_cons 6.382979e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 1.959990e+00	ci left: 1.288902e-06	ci right 1.826504e-05	k: 3	n:480000
KS ci ratio: 1.579682e-01	ci left: 1.180032e-03	ci right 1.384397e-03	k: 614	n:480000
PIK3CA   480000 perm   263 sec   (1822 perm/sec)   p_kst 1.279167e-03   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 1.959990e+00	ci left: 1.262598e-06	ci right 1.789229e-05	k: 3	n:490000
KS ci ratio: 1.557052e-01	ci left: 1.191244e-03	ci right 1.394319e-03	k: 632	n:490000
PIK3CA   490000 perm   272 sec   (1804 perm/sec)   p_kst 1.289796e-03   p_cons 6.122449e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 1.959990e+00	ci left: 1.237346e-06	ci right 1.753445e-05	k: 3	n:500000
KS ci ratio: 1.533011e-01	ci left: 1.205873e-03	ci right 1.407977e-03	k: 652	n:500000
PIK3CA   500000 perm   279 sec   (1791 perm/sec)   p_kst 1.304000e-03   p_cons 6.000000e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 1.959990e+00	ci left: 1.213084e-06	ci right 1.719063e-05	k: 3	n:510000
KS ci ratio: 1.520263e-01	ci left: 1.202973e-03	ci right 1.402761e-03	k: 663	n:510000
PIK3CA   510000 perm   287 sec   (1777 perm/sec)   p_kst 1.300000e-03   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 1.959991e+00	ci left: 1.189756e-06	ci right 1.686005e-05	k: 3	n:520000
KS ci ratio: 1.508947e-01	ci left: 1.198341e-03	ci right 1.395745e-03	k: 673	n:520000
PIK3CA   520000 perm   295 sec   (1765 perm/sec)   p_kst 1.294231e-03   p_cons 5.769231e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 1.959991e+00	ci left: 1.167307e-06	ci right 1.654193e-05	k: 3	n:530000
KS ci ratio: 1.494602e-01	ci left: 1.199337e-03	ci right 1.394859e-03	k: 686	n:530000
PIK3CA   530000 perm   302 sec   (1752 perm/sec)   p_kst 1.294340e-03   p_cons 5.660377e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 1.959991e+00	ci left: 1.145691e-06	ci right 1.623560e-05	k: 3	n:540000
KS ci ratio: 1.482781e-01	ci left: 1.196739e-03	ci right 1.390157e-03	k: 697	n:540000
PIK3CA   540000 perm   310 sec   (1741 perm/sec)   p_kst 1.290741e-03   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 1.959991e+00	ci left: 1.124860e-06	ci right 1.594041e-05	k: 3	n:550000
KS ci ratio: 1.468130e-01	ci left: 1.199495e-03	ci right 1.391275e-03	k: 711	n:550000
PIK3CA   550000 perm   318 sec   (1729 perm/sec)   p_kst 1.292727e-03   p_cons 5.454545e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 1.959991e+00	ci left: 1.104773e-06	ci right 1.565576e-05	k: 3	n:560000
KS ci ratio: 1.451903e-01	ci left: 1.205603e-03	ci right 1.396045e-03	k: 727	n:560000
PIK3CA   560000 perm   326 sec   (1717 perm/sec)   p_kst 1.298214e-03   p_cons 5.357143e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 1.959991e+00	ci left: 1.085391e-06	ci right 1.538110e-05	k: 3	n:570000
KS ci ratio: 1.439110e-01	ci left: 1.206434e-03	ci right 1.395184e-03	k: 740	n:570000
PIK3CA   570000 perm   334 sec   (1705 perm/sec)   p_kst 1.298246e-03   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 1.959992e+00	ci left: 1.066677e-06	ci right 1.511591e-05	k: 3	n:580000
KS ci ratio: 1.430455e-01	ci left: 1.200594e-03	ci right 1.387203e-03	k: 749	n:580000
PIK3CA   580000 perm   343 sec   (1692 perm/sec)   p_kst 1.291379e-03   p_cons 5.172414e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 1.959992e+00	ci left: 1.048598e-06	ci right 1.485971e-05	k: 3	n:590000
KS ci ratio: 1.416359e-01	ci left: 1.204763e-03	ci right 1.390020e-03	k: 764	n:590000
PIK3CA   590000 perm   351 sec   (1680 perm/sec)   p_kst 1.294915e-03   p_cons 5.084746e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 1.959992e+00	ci left: 1.031121e-06	ci right 1.461205e-05	k: 3	n:600000
KS ci ratio: 1.397300e-01	ci left: 1.218452e-03	ci right 1.403083e-03	k: 785	n:600000
PIK3CA   600000 perm   360 sec   (1669 perm/sec)   p_kst 1.308333e-03   p_cons 5.000000e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 1.959992e+00	ci left: 1.014218e-06	ci right 1.437251e-05	k: 3	n:610000
KS ci ratio: 1.385887e-01	ci left: 1.219047e-03	ci right 1.402135e-03	k: 798	n:610000
PIK3CA   610000 perm   368 sec   (1658 perm/sec)   p_kst 1.308197e-03   p_cons 4.918033e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 1.959992e+00	ci left: 9.978594e-07	ci right 1.414070e-05	k: 3	n:620000
KS ci ratio: 1.375596e-01	ci left: 1.218072e-03	ci right 1.399543e-03	k: 810	n:620000
PIK3CA   620000 perm   377 sec   (1647 perm/sec)   p_kst 1.306452e-03   p_cons 4.838710e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 1.959992e+00	ci left: 9.820203e-07	ci right 1.391624e-05	k: 3	n:630000
KS ci ratio: 1.368867e-01	ci left: 1.210999e-03	ci right 1.390462e-03	k: 818	n:630000
PIK3CA   630000 perm   385 sec   (1636 perm/sec)   p_kst 1.298413e-03   p_cons 4.761905e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 1.959992e+00	ci left: 9.666762e-07	ci right 1.369880e-05	k: 3	n:640000
KS ci ratio: 1.355686e-01	ci left: 1.216226e-03	ci right 1.394588e-03	k: 834	n:640000
PIK3CA   640000 perm   394 sec   (1625 perm/sec)   p_kst 1.303125e-03   p_cons 4.687500e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 1.959992e+00	ci left: 9.518043e-07	ci right 1.348805e-05	k: 3	n:650000
KS ci ratio: 1.346845e-01	ci left: 1.213865e-03	ci right 1.390627e-03	k: 845	n:650000
PIK3CA   650000 perm   403 sec   (1614 perm/sec)   p_kst 1.300000e-03   p_cons 4.615385e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 1.959993e+00	ci left: 9.373830e-07	ci right 1.328369e-05	k: 3	n:660000
KS ci ratio: 1.338176e-01	ci left: 1.211580e-03	ci right 1.386784e-03	k: 856	n:660000
PIK3CA   660000 perm   412 sec   (1604 perm/sec)   p_kst 1.296970e-03   p_cons 4.545455e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 1.959993e+00	ci left: 9.233922e-07	ci right 1.308543e-05	k: 3	n:670000
KS ci ratio: 1.332750e-01	ci left: 1.203595e-03	ci right 1.376882e-03	k: 863	n:670000
PIK3CA   670000 perm   420 sec   (1594 perm/sec)   p_kst 1.288060e-03   p_cons 4.477612e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 1.959993e+00	ci left: 9.098129e-07	ci right 1.289299e-05	k: 3	n:680000
KS ci ratio: 1.320575e-01	ci left: 1.208644e-03	ci right 1.380944e-03	k: 879	n:680000
PIK3CA   680000 perm   430 sec   (1580 perm/sec)   p_kst 1.292647e-03   p_cons 4.411765e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 1.753070e+00	ci left: 1.579517e-06	ci right 1.484282e-05	k: 4	n:690000
KS ci ratio: 1.310194e-01	ci left: 1.210750e-03	ci right 1.381887e-03	k: 893	n:690000
PIK3CA   690000 perm   440 sec   (1569 perm/sec)   p_kst 1.294203e-03   p_cons 5.797101e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 1.753070e+00	ci left: 1.556953e-06	ci right 1.463078e-05	k: 4	n:700000
KS ci ratio: 1.293649e-01	ci left: 1.225241e-03	ci right 1.396072e-03	k: 916	n:700000
PIK3CA   700000 perm   449 sec   (1560 perm/sec)   p_kst 1.308571e-03   p_cons 5.714286e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 1.753070e+00	ci left: 1.535024e-06	ci right 1.442471e-05	k: 4	n:710000
KS ci ratio: 1.281132e-01	ci left: 1.232520e-03	ci right 1.402577e-03	k: 934	n:710000
PIK3CA   710000 perm   458 sec   (1550 perm/sec)   p_kst 1.315493e-03   p_cons 5.633803e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 1.753070e+00	ci left: 1.513704e-06	ci right 1.422437e-05	k: 4	n:720000
KS ci ratio: 1.271646e-01	ci left: 1.234225e-03	ci right 1.403161e-03	k: 948	n:720000
PIK3CA   720000 perm   467 sec   (1540 perm/sec)   p_kst 1.316667e-03   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 1.753070e+00	ci left: 1.492968e-06	ci right 1.402951e-05	k: 4	n:730000
KS ci ratio: 1.262368e-01	ci left: 1.235888e-03	ci right 1.403725e-03	k: 962	n:730000
PIK3CA   730000 perm   477 sec   (1530 perm/sec)   p_kst 1.317808e-03   p_cons 5.479452e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 1.753070e+00	ci left: 1.472793e-06	ci right 1.383993e-05	k: 4	n:740000
KS ci ratio: 1.252008e-01	ci left: 1.240129e-03	ci right 1.407057e-03	k: 978	n:740000
PIK3CA   740000 perm   487 sec   (1521 perm/sec)   p_kst 1.321622e-03   p_cons 5.405405e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 1.753070e+00	ci left: 1.453156e-06	ci right 1.365539e-05	k: 4	n:750000
KS ci ratio: 1.243777e-01	ci left: 1.240386e-03	ci right 1.406171e-03	k: 991	n:750000
PIK3CA   750000 perm   497 sec   (1509 perm/sec)   p_kst 1.321333e-03   p_cons 5.333333e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 1.753070e+00	ci left: 1.434035e-06	ci right 1.347572e-05	k: 4	n:760000
KS ci ratio: 1.232640e-01	ci left: 1.247016e-03	ci right 1.412085e-03	k: 1009	n:760000
PIK3CA   760000 perm   507 sec   (1499 perm/sec)   p_kst 1.327632e-03   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 1.753070e+00	ci left: 1.415411e-06	ci right 1.330071e-05	k: 4	n:770000
KS ci ratio: 1.222393e-01	ci left: 1.252221e-03	ci right 1.416502e-03	k: 1026	n:770000
PIK3CA   770000 perm   517 sec   (1490 perm/sec)   p_kst 1.332468e-03   p_cons 5.194805e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 1.753071e+00	ci left: 1.397265e-06	ci right 1.313019e-05	k: 4	n:780000
KS ci ratio: 1.214145e-01	ci left: 1.253569e-03	ci right 1.416837e-03	k: 1040	n:780000
PIK3CA   780000 perm   527 sec   (1479 perm/sec)   p_kst 1.333333e-03   p_cons 5.128205e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 1.600326e+00	ci left: 2.055049e-06	ci right 1.476998e-05	k: 5	n:790000
KS ci ratio: 1.206634e-01	ci left: 1.253659e-03	ci right 1.415856e-03	k: 1053	n:790000
PIK3CA   790000 perm   537 sec   (1470 perm/sec)   p_kst 1.332911e-03   p_cons 6.329114e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 1.600326e+00	ci left: 2.029361e-06	ci right 1.458535e-05	k: 5	n:800000
KS ci ratio: 1.198699e-01	ci left: 1.254961e-03	ci right 1.416184e-03	k: 1067	n:800000
PIK3CA   800000 perm   548 sec   (1461 perm/sec)   p_kst 1.333750e-03   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 1.600326e+00	ci left: 2.004307e-06	ci right 1.440529e-05	k: 5	n:810000
KS ci ratio: 1.193129e-01	ci left: 1.251444e-03	ci right 1.411415e-03	k: 1077	n:810000
PIK3CA   810000 perm   558 sec   (1451 perm/sec)   p_kst 1.329630e-03   p_cons 6.172840e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 1.600326e+00	ci left: 1.979864e-06	ci right 1.422962e-05	k: 5	n:820000
KS ci ratio: 1.182747e-01	ci left: 1.258665e-03	ci right 1.418061e-03	k: 1096	n:820000
PIK3CA   820000 perm   569 sec   (1441 perm/sec)   p_kst 1.336585e-03   p_cons 6.097561e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 1.600327e+00	ci left: 1.956010e-06	ci right 1.405817e-05	k: 5	n:830000
KS ci ratio: 1.174741e-01	ci left: 1.261040e-03	ci right 1.419581e-03	k: 1111	n:830000
PIK3CA   830000 perm   580 sec   (1431 perm/sec)   p_kst 1.338554e-03   p_cons 6.024096e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 1.600327e+00	ci left: 1.932725e-06	ci right 1.389082e-05	k: 5	n:840000
KS ci ratio: 1.169497e-01	ci left: 1.257583e-03	ci right 1.414935e-03	k: 1121	n:840000
PIK3CA   840000 perm   590 sec   (1423 perm/sec)   p_kst 1.334524e-03   p_cons 5.952381e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 1.600327e+00	ci left: 1.909987e-06	ci right 1.372740e-05	k: 5	n:850000
KS ci ratio: 1.160224e-01	ci left: 1.263348e-03	ci right 1.420082e-03	k: 1139	n:850000
PIK3CA   850000 perm   601 sec   (1415 perm/sec)   p_kst 1.340000e-03   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 1.600327e+00	ci left: 1.887777e-06	ci right 1.356778e-05	k: 5	n:860000
KS ci ratio: 1.154669e-01	ci left: 1.261078e-03	ci right 1.416730e-03	k: 1150	n:860000
PIK3CA   860000 perm   611 sec   (1406 perm/sec)   p_kst 1.337209e-03   p_cons 5.813953e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 1.600327e+00	ci left: 1.866079e-06	ci right 1.341182e-05	k: 5	n:870000
KS ci ratio: 1.150680e-01	ci left: 1.255513e-03	ci right 1.409907e-03	k: 1158	n:870000
PIK3CA   870000 perm   623 sec   (1397 perm/sec)   p_kst 1.331034e-03   p_cons 5.747126e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 1.600327e+00	ci left: 1.844873e-06	ci right 1.325942e-05	k: 5	n:880000
KS ci ratio: 1.144770e-01	ci left: 1.254491e-03	ci right 1.407913e-03	k: 1170	n:880000
PIK3CA   880000 perm   633 sec   (1389 perm/sec)   p_kst 1.329545e-03   p_cons 5.681818e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 1.600327e+00	ci left: 1.824144e-06	ci right 1.311044e-05	k: 5	n:890000
KS ci ratio: 1.137987e-01	ci left: 1.255677e-03	ci right 1.408273e-03	k: 1184	n:890000
PIK3CA   890000 perm   644 sec   (1381 perm/sec)   p_kst 1.330337e-03   p_cons 5.617978e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 1.600327e+00	ci left: 1.803876e-06	ci right 1.296477e-05	k: 5	n:900000
KS ci ratio: 1.131323e-01	ci left: 1.256839e-03	ci right 1.408622e-03	k: 1198	n:900000
PIK3CA   900000 perm   656 sec   (1373 perm/sec)   p_kst 1.331111e-03   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 1.600327e+00	ci left: 1.784053e-06	ci right 1.282230e-05	k: 5	n:910000
KS ci ratio: 1.125240e-01	ci left: 1.256910e-03	ci right 1.407831e-03	k: 1211	n:910000
PIK3CA   910000 perm   667 sec   (1365 perm/sec)   p_kst 1.330769e-03   p_cons 5.494505e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 1.600327e+00	ci left: 1.764661e-06	ci right 1.268292e-05	k: 5	n:920000
KS ci ratio: 1.121088e-01	ci left: 1.252756e-03	ci right 1.402586e-03	k: 1220	n:920000
PIK3CA   920000 perm   678 sec   (1357 perm/sec)   p_kst 1.326087e-03   p_cons 5.434783e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 1.600327e+00	ci left: 1.745687e-06	ci right 1.254655e-05	k: 5	n:930000
KS ci ratio: 1.116073e-01	ci left: 1.250782e-03	ci right 1.399664e-03	k: 1231	n:930000
PIK3CA   930000 perm   689 sec   (1349 perm/sec)   p_kst 1.323656e-03   p_cons 5.376344e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 1.600327e+00	ci left: 1.727115e-06	ci right 1.241308e-05	k: 5	n:940000
KS ci ratio: 1.111125e-01	ci left: 1.248852e-03	ci right 1.396802e-03	k: 1242	n:940000
PIK3CA   940000 perm   701 sec   (1341 perm/sec)   p_kst 1.321277e-03   p_cons 5.319149e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 1.600327e+00	ci left: 1.708935e-06	ci right 1.228241e-05	k: 5	n:950000
KS ci ratio: 1.105801e-01	ci left: 1.247987e-03	ci right 1.395080e-03	k: 1254	n:950000
PIK3CA   950000 perm   712 sec   (1334 perm/sec)   p_kst 1.320000e-03   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 1.600327e+00	ci left: 1.691134e-06	ci right 1.215447e-05	k: 5	n:960000
KS ci ratio: 1.101423e-01	ci left: 1.245117e-03	ci right 1.391252e-03	k: 1264	n:960000
PIK3CA   960000 perm   724 sec   (1326 perm/sec)   p_kst 1.316667e-03   p_cons 5.208333e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 1.600328e+00	ci left: 1.673699e-06	ci right 1.202917e-05	k: 5	n:970000
KS ci ratio: 1.097960e-01	ci left: 1.240301e-03	ci right 1.385384e-03	k: 1272	n:970000
PIK3CA   970000 perm   736 sec   (1318 perm/sec)   p_kst 1.311340e-03   p_cons 5.154639e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 1.600328e+00	ci left: 1.656621e-06	ci right 1.190642e-05	k: 5	n:980000
KS ci ratio: 1.092822e-01	ci left: 1.239554e-03	ci right 1.383828e-03	k: 1284	n:980000
PIK3CA   980000 perm   748 sec   (1310 perm/sec)   p_kst 1.310204e-03   p_cons 5.102041e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 1.600328e+00	ci left: 1.639887e-06	ci right 1.178615e-05	k: 5	n:990000
KS ci ratio: 1.085662e-01	ci left: 1.243737e-03	ci right 1.387489e-03	k: 1301	n:990000
PIK3CA   990000 perm   760 sec   (1303 perm/sec)   p_kst 1.314141e-03   p_cons 5.050505e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 1.600328e+00	ci left: 1.623488e-06	ci right 1.166829e-05	k: 5	n:1000000
KS ci ratio: 1.081931e-01	ci left: 1.240056e-03	ci right 1.382858e-03	k: 1310	n:1000000
PIK3CA   1000000 perm   772 sec   (1295 perm/sec)   p_kst 1.310000e-03   p_cons 5.000000e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 1.600328e+00	ci left: 1.607414e-06	ci right 1.155277e-05	k: 5	n:1010000
KS ci ratio: 1.074982e-01	ci left: 1.244156e-03	ci right 1.386451e-03	k: 1327	n:1010000
PIK3CA   1010000 perm   784 sec   (1288 perm/sec)   p_kst 1.313861e-03   p_cons 4.950495e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 1.600328e+00	ci left: 1.591655e-06	ci right 1.143950e-05	k: 5	n:1020000
KS ci ratio: 1.070558e-01	ci left: 1.242453e-03	ci right 1.383932e-03	k: 1338	n:1020000
PIK3CA   1020000 perm   796 sec   (1281 perm/sec)   p_kst 1.311765e-03   p_cons 4.901961e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 1.600328e+00	ci left: 1.576202e-06	ci right 1.132844e-05	k: 5	n:1030000
KS ci ratio: 1.065399e-01	ci left: 1.242675e-03	ci right 1.383455e-03	k: 1351	n:1030000
PIK3CA   1030000 perm   808 sec   (1274 perm/sec)   p_kst 1.311650e-03   p_cons 4.854369e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 1.600328e+00	ci left: 1.561046e-06	ci right 1.121951e-05	k: 5	n:1040000
KS ci ratio: 1.062263e-01	ci left: 1.238213e-03	ci right 1.378049e-03	k: 1359	n:1040000
PIK3CA   1040000 perm   821 sec   (1266 perm/sec)   p_kst 1.306731e-03   p_cons 4.807692e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 1.600328e+00	ci left: 1.546179e-06	ci right 1.111266e-05	k: 5	n:1050000
KS ci ratio: 1.059543e-01	ci left: 1.232911e-03	ci right 1.371769e-03	k: 1366	n:1050000
PIK3CA   1050000 perm   833 sec   (1260 perm/sec)   p_kst 1.300952e-03   p_cons 4.761905e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 1.600328e+00	ci left: 1.531593e-06	ci right 1.100783e-05	k: 5	n:1060000
KS ci ratio: 1.051114e-01	ci left: 1.241486e-03	ci right 1.380129e-03	k: 1388	n:1060000
PIK3CA   1060000 perm   846 sec   (1253 perm/sec)   p_kst 1.309434e-03   p_cons 4.716981e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 1.600328e+00	ci left: 1.517279e-06	ci right 1.090495e-05	k: 5	n:1070000
KS ci ratio: 1.048103e-01	ci left: 1.237164e-03	ci right 1.374904e-03	k: 1396	n:1070000
PIK3CA   1070000 perm   860 sec   (1245 perm/sec)   p_kst 1.304673e-03   p_cons 4.672897e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 1.600328e+00	ci left: 1.503230e-06	ci right 1.080398e-05	k: 5	n:1080000
KS ci ratio: 1.044373e-01	ci left: 1.234726e-03	ci right 1.371675e-03	k: 1406	n:1080000
PIK3CA   1080000 perm   873 sec   (1237 perm/sec)   p_kst 1.301852e-03   p_cons 4.629630e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 1.600328e+00	ci left: 1.489439e-06	ci right 1.070486e-05	k: 5	n:1090000
KS ci ratio: 1.039215e-01	ci left: 1.235907e-03	ci right 1.372269e-03	k: 1420	n:1090000
PIK3CA   1090000 perm   886 sec   (1231 perm/sec)   p_kst 1.302752e-03   p_cons 4.587156e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 1.600328e+00	ci left: 1.475898e-06	ci right 1.060754e-05	k: 5	n:1100000
KS ci ratio: 1.035217e-01	ci left: 1.234412e-03	ci right 1.370054e-03	k: 1431	n:1100000
PIK3CA   1100000 perm   898 sec   (1224 perm/sec)   p_kst 1.300909e-03   p_cons 4.545455e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 1.600328e+00	ci left: 1.462602e-06	ci right 1.051198e-05	k: 5	n:1110000
KS ci ratio: 1.032340e-01	ci left: 1.230312e-03	ci right 1.365104e-03	k: 1439	n:1110000
PIK3CA   1110000 perm   912 sec   (1217 perm/sec)   p_kst 1.296396e-03   p_cons 4.504505e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 1.600328e+00	ci left: 1.449543e-06	ci right 1.041812e-05	k: 5	n:1120000
KS ci ratio: 1.028066e-01	ci left: 1.229766e-03	ci right 1.363906e-03	k: 1451	n:1120000
PIK3CA   1120000 perm   925 sec   (1211 perm/sec)   p_kst 1.295536e-03   p_cons 4.464286e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 1.600328e+00	ci left: 1.436715e-06	ci right 1.032593e-05	k: 5	n:1130000
KS ci ratio: 1.023844e-01	ci left: 1.229230e-03	ci right 1.362728e-03	k: 1463	n:1130000
PIK3CA   1130000 perm   938 sec   (1204 perm/sec)   p_kst 1.294690e-03   p_cons 4.424779e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 1.600328e+00	ci left: 1.424112e-06	ci right 1.023535e-05	k: 5	n:1140000
KS ci ratio: 1.020020e-01	ci left: 1.227849e-03	ci right 1.360670e-03	k: 1474	n:1140000
PIK3CA   1140000 perm   951 sec   (1199 perm/sec)   p_kst 1.292982e-03   p_cons 4.385965e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 1.600328e+00	ci left: 1.411729e-06	ci right 1.014635e-05	k: 5	n:1150000
KS ci ratio: 1.017267e-01	ci left: 1.223952e-03	ci right 1.355972e-03	k: 1482	n:1150000
PIK3CA   1150000 perm   964 sec   (1193 perm/sec)   p_kst 1.288696e-03   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 1.600328e+00	ci left: 1.399559e-06	ci right 1.005888e-05	k: 5	n:1160000
KS ci ratio: 1.011822e-01	ci left: 1.226843e-03	ci right 1.358425e-03	k: 1498	n:1160000
PIK3CA   1160000 perm   977 sec   (1187 perm/sec)   p_kst 1.291379e-03   p_cons 4.310345e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 1.600329e+00	ci left: 1.387597e-06	ci right 9.972905e-06	k: 5	n:1170000
KS ci ratio: 1.008131e-01	ci left: 1.225522e-03	ci right 1.356454e-03	k: 1509	n:1170000
PIK3CA   1170000 perm   990 sec   (1182 perm/sec)   p_kst 1.289744e-03   p_cons 4.273504e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 1.600329e+00	ci left: 1.375837e-06	ci right 9.888389e-06	k: 5	n:1180000
KS ci ratio: 1.003819e-01	ci left: 1.225876e-03	ci right 1.356253e-03	k: 1522	n:1180000
PIK3CA   1180000 perm   1004 sec   (1175 perm/sec)   p_kst 1.289831e-03   p_cons 4.237288e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 1.600329e+00	ci left: 1.364276e-06	ci right 9.805294e-06	k: 5	n:1190000
KS ci ratio: 9.982615e-02	ci left: 1.229503e-03	ci right 1.359499e-03	k: 1539	n:1190000
PIK3CA   1190000 perm   1018 sec   (1169 perm/sec)   p_kst 1.293277e-03   p_cons 4.201681e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 1.600329e+00	ci left: 1.352907e-06	ci right 9.723583e-06	k: 5	n:1200000
KS ci ratio: 9.956807e-02	ci left: 1.225757e-03	ci right 1.355003e-03	k: 1547	n:1200000
PIK3CA   1200000 perm   1032 sec   (1162 perm/sec)   p_kst 1.289167e-03   p_cons 4.166667e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 1.600329e+00	ci left: 1.341726e-06	ci right 9.643223e-06	k: 5	n:1210000
KS ci ratio: 9.902564e-02	ci left: 1.229328e-03	ci right 1.358203e-03	k: 1564	n:1210000
PIK3CA   1210000 perm   1046 sec   (1156 perm/sec)   p_kst 1.292562e-03   p_cons 4.132231e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 1.600329e+00	ci left: 1.330728e-06	ci right 9.564180e-06	k: 5	n:1220000
KS ci ratio: 9.871090e-02	ci left: 1.227245e-03	ci right 1.355469e-03	k: 1574	n:1220000
PIK3CA   1220000 perm   1062 sec   (1149 perm/sec)   p_kst 1.290164e-03   p_cons 4.098361e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 1.600329e+00	ci left: 1.319909e-06	ci right 9.486423e-06	k: 5	n:1230000
KS ci ratio: 9.836806e-02	ci left: 1.225990e-03	ci right 1.353613e-03	k: 1585	n:1230000
PIK3CA   1230000 perm   1076 sec   (1143 perm/sec)   p_kst 1.288618e-03   p_cons 4.065041e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 1.600329e+00	ci left: 1.309264e-06	ci right 9.409920e-06	k: 5	n:1240000
KS ci ratio: 9.790608e-02	ci left: 1.227903e-03	ci right 1.355090e-03	k: 1600	n:1240000
PIK3CA   1240000 perm   1090 sec   (1138 perm/sec)   p_kst 1.290323e-03   p_cons 4.032258e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 1.600329e+00	ci left: 1.298790e-06	ci right 9.334641e-06	k: 5	n:1250000
KS ci ratio: 9.757154e-02	ci left: 1.226665e-03	ci right 1.353264e-03	k: 1611	n:1250000
PIK3CA   1250000 perm   1104 sec   (1132 perm/sec)   p_kst 1.288800e-03   p_cons 4.000000e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 1.600329e+00	ci left: 1.288482e-06	ci right 9.260557e-06	k: 5	n:1260000
KS ci ratio: 9.724040e-02	ci left: 1.225447e-03	ci right 1.351467e-03	k: 1622	n:1260000
PIK3CA   1260000 perm   1118 sec   (1127 perm/sec)   p_kst 1.287302e-03   p_cons 3.968254e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 1.600329e+00	ci left: 1.278337e-06	ci right 9.187639e-06	k: 5	n:1270000
KS ci ratio: 9.682366e-02	ci left: 1.226554e-03	ci right 1.352116e-03	k: 1636	n:1270000
PIK3CA   1270000 perm   1133 sec   (1121 perm/sec)   p_kst 1.288189e-03   p_cons 3.937008e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 1.600329e+00	ci left: 1.268350e-06	ci right 9.115861e-06	k: 5	n:1280000
KS ci ratio: 9.641222e-02	ci left: 1.227644e-03	ci right 1.352755e-03	k: 1650	n:1280000
PIK3CA   1280000 perm   1147 sec   (1116 perm/sec)   p_kst 1.289063e-03   p_cons 3.906250e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 1.600329e+00	ci left: 1.258518e-06	ci right 9.045195e-06	k: 5	n:1290000
KS ci ratio: 9.612167e-02	ci left: 1.225693e-03	ci right 1.350207e-03	k: 1660	n:1290000
PIK3CA   1290000 perm   1162 sec   (1110 perm/sec)   p_kst 1.286822e-03   p_cons 3.875969e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 1.600329e+00	ci left: 1.248837e-06	ci right 8.975617e-06	k: 5	n:1300000
KS ci ratio: 9.580503e-02	ci left: 1.224523e-03	ci right 1.348485e-03	k: 1671	n:1300000
PIK3CA   1300000 perm   1176 sec   (1105 perm/sec)   p_kst 1.285385e-03   p_cons 3.846154e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 1.600329e+00	ci left: 1.239304e-06	ci right 8.907101e-06	k: 5	n:1310000
KS ci ratio: 9.534978e-02	ci left: 1.227097e-03	ci right 1.350697e-03	k: 1687	n:1310000
PIK3CA   1310000 perm   1191 sec   (1100 perm/sec)   p_kst 1.287786e-03   p_cons 3.816794e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 1.600329e+00	ci left: 1.229915e-06	ci right 8.839623e-06	k: 5	n:1320000
KS ci ratio: 9.498472e-02	ci left: 1.227415e-03	ci right 1.350547e-03	k: 1700	n:1320000
PIK3CA   1320000 perm   1206 sec   (1095 perm/sec)   p_kst 1.287879e-03   p_cons 3.787879e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 1.600329e+00	ci left: 1.220668e-06	ci right 8.773160e-06	k: 5	n:1330000
KS ci ratio: 9.451346e-02	ci left: 1.230666e-03	ci right 1.353477e-03	k: 1717	n:1330000
PIK3CA   1330000 perm   1220 sec   (1090 perm/sec)   p_kst 1.290977e-03   p_cons 3.759398e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 1.600329e+00	ci left: 1.211558e-06	ci right 8.707689e-06	k: 5	n:1340000
KS ci ratio: 9.413066e-02	ci left: 1.231683e-03	ci right 1.354071e-03	k: 1731	n:1340000
PIK3CA   1340000 perm   1235 sec   (1085 perm/sec)   p_kst 1.291791e-03   p_cons 3.731343e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 1.600329e+00	ci left: 1.202584e-06	ci right 8.643188e-06	k: 5	n:1350000
KS ci ratio: 9.380629e-02	ci left: 1.231240e-03	ci right 1.353138e-03	k: 1743	n:1350000
PIK3CA   1350000 perm   1251 sec   (1079 perm/sec)   p_kst 1.291111e-03   p_cons 3.703704e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 1.600329e+00	ci left: 1.193741e-06	ci right 8.579635e-06	k: 5	n:1360000
KS ci ratio: 9.351191e-02	ci left: 1.230085e-03	ci right 1.351466e-03	k: 1754	n:1360000
PIK3CA   1360000 perm   1266 sec   (1074 perm/sec)   p_kst 1.289706e-03   p_cons 3.676471e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 1.600329e+00	ci left: 1.185028e-06	ci right 8.517010e-06	k: 5	n:1370000
KS ci ratio: 9.327319e-02	ci left: 1.227522e-03	ci right 1.348325e-03	k: 1763	n:1370000
PIK3CA   1370000 perm   1281 sec   (1069 perm/sec)   p_kst 1.286861e-03   p_cons 3.649635e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 1.600329e+00	ci left: 1.176440e-06	ci right 8.455293e-06	k: 5	n:1380000
KS ci ratio: 9.287906e-02	ci left: 1.229244e-03	ci right 1.349677e-03	k: 1778	n:1380000
PIK3CA   1380000 perm   1296 sec   (1064 perm/sec)   p_kst 1.288406e-03   p_cons 3.623188e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 1.600329e+00	ci left: 1.167977e-06	ci right 8.394463e-06	k: 5	n:1390000
KS ci ratio: 9.261921e-02	ci left: 1.227428e-03	ci right 1.347328e-03	k: 1788	n:1390000
PIK3CA   1390000 perm   1312 sec   (1060 perm/sec)   p_kst 1.286331e-03   p_cons 3.597122e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 1.600329e+00	ci left: 1.159634e-06	ci right 8.334503e-06	k: 5	n:1400000
KS ci ratio: 9.231017e-02	ci left: 1.227033e-03	ci right 1.346474e-03	k: 1800	n:1400000
PIK3CA   1400000 perm   1327 sec   (1055 perm/sec)   p_kst 1.285714e-03   p_cons 3.571429e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 1.600329e+00	ci left: 1.151410e-06	ci right 8.275393e-06	k: 5	n:1410000
KS ci ratio: 9.210599e-02	ci left: 1.223874e-03	ci right 1.342729e-03	k: 1808	n:1410000
PIK3CA   1410000 perm   1343 sec   (1050 perm/sec)   p_kst 1.282270e-03   p_cons 3.546099e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 1.600329e+00	ci left: 1.143301e-06	ci right 8.217116e-06	k: 5	n:1420000
KS ci ratio: 9.170124e-02	ci left: 1.226264e-03	ci right 1.344799e-03	k: 1824	n:1420000
PIK3CA   1420000 perm   1358 sec   (1045 perm/sec)   p_kst 1.284507e-03   p_cons 3.521127e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 1.600329e+00	ci left: 1.135306e-06	ci right 8.159654e-06	k: 5	n:1430000
KS ci ratio: 9.150107e-02	ci left: 1.223155e-03	ci right 1.341118e-03	k: 1832	n:1430000
PIK3CA   1430000 perm   1374 sec   (1040 perm/sec)   p_kst 1.281119e-03   p_cons 3.496503e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 1.600329e+00	ci left: 1.127422e-06	ci right 8.102990e-06	k: 5	n:1440000
KS ci ratio: 9.100570e-02	ci left: 1.228233e-03	ci right 1.346010e-03	k: 1852	n:1440000
PIK3CA   1440000 perm   1390 sec   (1036 perm/sec)   p_kst 1.286111e-03   p_cons 3.472222e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 1.600329e+00	ci left: 1.119647e-06	ci right 8.047107e-06	k: 5	n:1450000
KS ci ratio: 9.061523e-02	ci left: 1.230546e-03	ci right 1.348012e-03	k: 1868	n:1450000
PIK3CA   1450000 perm   1406 sec   (1032 perm/sec)   p_kst 1.288276e-03   p_cons 3.448276e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 1.600329e+00	ci left: 1.111978e-06	ci right 7.991990e-06	k: 5	n:1460000
KS ci ratio: 9.034980e-02	ci left: 1.229481e-03	ci right 1.346484e-03	k: 1879	n:1460000
PIK3CA   1460000 perm   1422 sec   (1027 perm/sec)   p_kst 1.286986e-03   p_cons 3.424658e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 1.600329e+00	ci left: 1.104413e-06	ci right 7.937623e-06	k: 5	n:1470000
KS ci ratio: 8.989649e-02	ci left: 1.233751e-03	ci right 1.350540e-03	k: 1898	n:1470000
PIK3CA   1470000 perm   1438 sec   (1023 perm/sec)   p_kst 1.291156e-03   p_cons 3.401361e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 1.600330e+00	ci left: 1.096951e-06	ci right 7.883990e-06	k: 5	n:1480000
KS ci ratio: 8.968434e-02	ci left: 1.231360e-03	ci right 1.347633e-03	k: 1907	n:1480000
PIK3CA   1480000 perm   1454 sec   (1018 perm/sec)   p_kst 1.288514e-03   p_cons 3.378378e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 1.600330e+00	ci left: 1.089589e-06	ci right 7.831078e-06	k: 5	n:1490000
KS ci ratio: 8.938036e-02	ci left: 1.231625e-03	ci right 1.347509e-03	k: 1920	n:1490000
PIK3CA   1490000 perm   1470 sec   (1014 perm/sec)   p_kst 1.288591e-03   p_cons 3.355705e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 1.481617e+00	ci left: 1.467931e-06	ci right 8.706296e-06	k: 6	n:1500000
KS ci ratio: 8.907945e-02	ci left: 1.231888e-03	ci right 1.347385e-03	k: 1933	n:1500000
PIK3CA   1500000 perm   1486 sec   (1010 perm/sec)   p_kst 1.288667e-03   p_cons 4.000000e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 1.481617e+00	ci left: 1.458209e-06	ci right 8.648638e-06	k: 6	n:1510000
KS ci ratio: 8.887302e-02	ci left: 1.229557e-03	ci right 1.344555e-03	k: 1942	n:1510000
PIK3CA   1510000 perm   1502 sec   (1005 perm/sec)   p_kst 1.286093e-03   p_cons 3.973510e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 1.481617e+00	ci left: 1.448616e-06	ci right 8.591739e-06	k: 6	n:1520000
KS ci ratio: 8.862257e-02	ci left: 1.228544e-03	ci right 1.343107e-03	k: 1953	n:1520000
PIK3CA   1520000 perm   1518 sec   (1001 perm/sec)   p_kst 1.284868e-03   p_cons 3.947368e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 1.481617e+00	ci left: 1.439148e-06	ci right 8.535584e-06	k: 6	n:1530000
KS ci ratio: 8.819464e-02	ci left: 1.232658e-03	ci right 1.347021e-03	k: 1972	n:1530000
PIK3CA   1530000 perm   1534 sec   (998 perm/sec)   p_kst 1.288889e-03   p_cons 3.921569e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 1.481617e+00	ci left: 1.429803e-06	ci right 8.480158e-06	k: 6	n:1540000
KS ci ratio: 8.786122e-02	ci left: 1.234180e-03	ci right 1.348229e-03	k: 1987	n:1540000
PIK3CA   1540000 perm   1550 sec   (994 perm/sec)   p_kst 1.290260e-03   p_cons 3.896104e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 1.481617e+00	ci left: 1.420578e-06	ci right 8.425448e-06	k: 6	n:1550000
KS ci ratio: 8.764116e-02	ci left: 1.232527e-03	ci right 1.346123e-03	k: 1997	n:1550000
PIK3CA   1550000 perm   1566 sec   (990 perm/sec)   p_kst 1.288387e-03   p_cons 3.870968e-06   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 1.481617e+00	ci left: 1.411472e-06	ci right 8.371439e-06	k: 6	n:1560000
KS ci ratio: 8.733568e-02	ci left: 1.233404e-03	ci right 1.346665e-03	k: 2011	n:1560000
PIK3CA   1560000 perm   1583 sec   (985 perm/sec)   p_kst 1.289103e-03   p_cons 3.846154e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 1.481617e+00	ci left: 1.402482e-06	ci right 8.318118e-06	k: 6	n:1570000
KS ci ratio: 8.701187e-02	ci left: 1.234894e-03	ci right 1.347850e-03	k: 2026	n:1570000
PIK3CA   1570000 perm   1600 sec   (981 perm/sec)   p_kst 1.290446e-03   p_cons 3.821656e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 1.481617e+00	ci left: 1.393605e-06	ci right 8.265471e-06	k: 6	n:1580000
KS ci ratio: 8.667040e-02	ci left: 1.236985e-03	ci right 1.349666e-03	k: 2042	n:1580000
PIK3CA   1580000 perm   1616 sec   (977 perm/sec)   p_kst 1.292405e-03   p_cons 3.797468e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 1.481617e+00	ci left: 1.384840e-06	ci right 8.213487e-06	k: 6	n:1590000
KS ci ratio: 8.639595e-02	ci left: 1.237205e-03	ci right 1.349530e-03	k: 2055	n:1590000
PIK3CA   1590000 perm   1633 sec   (973 perm/sec)   p_kst 1.292453e-03   p_cons 3.773585e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 1.481617e+00	ci left: 1.376185e-06	ci right 8.162153e-06	k: 6	n:1600000
KS ci ratio: 8.616581e-02	ci left: 1.236199e-03	ci right 1.348119e-03	k: 2066	n:1600000
PIK3CA   1600000 perm   1650 sec   (970 perm/sec)   p_kst 1.291250e-03   p_cons 3.750000e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 1.481617e+00	ci left: 1.367637e-06	ci right 8.111457e-06	k: 6	n:1610000
KS ci ratio: 8.518150e-02	ci left: 1.257696e-03	ci right 1.370197e-03	k: 2114	n:1610000
PIK3CA   1610000 perm   1668 sec   (965 perm/sec)   p_kst 1.313043e-03   p_cons 3.726708e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 1.481617e+00	ci left: 1.359195e-06	ci right 8.061386e-06	k: 6	n:1620000
KS ci ratio: 8.496091e-02	ci left: 1.256578e-03	ci right 1.368674e-03	k: 2125	n:1620000
PIK3CA   1620000 perm   1686 sec   (961 perm/sec)   p_kst 1.311728e-03   p_cons 3.703704e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 1.481617e+00	ci left: 1.350857e-06	ci right 8.011930e-06	k: 6	n:1630000
KS ci ratio: 8.476188e-02	ci left: 1.254874e-03	ci right 1.366542e-03	k: 2135	n:1630000
PIK3CA   1630000 perm   1704 sec   (957 perm/sec)   p_kst 1.309816e-03   p_cons 3.680982e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 1.481617e+00	ci left: 1.342620e-06	ci right 7.963077e-06	k: 6	n:1640000
KS ci ratio: 8.452481e-02	ci left: 1.254384e-03	ci right 1.365681e-03	k: 2147	n:1640000
PIK3CA   1640000 perm   1722 sec   (953 perm/sec)   p_kst 1.309146e-03   p_cons 3.658537e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 1.481617e+00	ci left: 1.334482e-06	ci right 7.914816e-06	k: 6	n:1650000
KS ci ratio: 8.432882e-02	ci left: 1.252715e-03	ci right 1.363593e-03	k: 2157	n:1650000
PIK3CA   1650000 perm   1739 sec   (949 perm/sec)   p_kst 1.307273e-03   p_cons 3.636364e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 1.481617e+00	ci left: 1.326443e-06	ci right 7.867136e-06	k: 6	n:1660000
KS ci ratio: 8.413419e-02	ci left: 1.251065e-03	ci right 1.361530e-03	k: 2167	n:1660000
PIK3CA   1660000 perm   1757 sec   (945 perm/sec)   p_kst 1.305422e-03   p_cons 3.614458e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 1.481617e+00	ci left: 1.318501e-06	ci right 7.820028e-06	k: 6	n:1670000
KS ci ratio: 8.394090e-02	ci left: 1.249436e-03	ci right 1.359491e-03	k: 2177	n:1670000
PIK3CA   1670000 perm   1774 sec   (941 perm/sec)   p_kst 1.303593e-03   p_cons 3.592814e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 1.481617e+00	ci left: 1.310652e-06	ci right 7.773480e-06	k: 6	n:1680000
KS ci ratio: 8.365328e-02	ci left: 1.250740e-03	ci right 1.360514e-03	k: 2192	n:1680000
PIK3CA   1680000 perm   1792 sec   (937 perm/sec)   p_kst 1.304762e-03   p_cons 3.571429e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 1.481617e+00	ci left: 1.302897e-06	ci right 7.727483e-06	k: 6	n:1690000
KS ci ratio: 8.346328e-02	ci left: 1.249133e-03	ci right 1.358505e-03	k: 2202	n:1690000
PIK3CA   1690000 perm   1810 sec   (934 perm/sec)   p_kst 1.302959e-03   p_cons 3.550296e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 1.481617e+00	ci left: 1.295233e-06	ci right 7.682028e-06	k: 6	n:1700000
KS ci ratio: 8.316176e-02	ci left: 1.251001e-03	ci right 1.360121e-03	k: 2218	n:1700000
PIK3CA   1700000 perm   1827 sec   (930 perm/sec)   p_kst 1.304706e-03   p_cons 3.529412e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 1.481617e+00	ci left: 1.287659e-06	ci right 7.637104e-06	k: 6	n:1710000
KS ci ratio: 8.291922e-02	ci left: 1.251130e-03	ci right 1.359927e-03	k: 2231	n:1710000
PIK3CA   1710000 perm   1845 sec   (927 perm/sec)   p_kst 1.304678e-03   p_cons 3.508772e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 1.481617e+00	ci left: 1.280172e-06	ci right 7.592702e-06	k: 6	n:1720000
KS ci ratio: 8.271570e-02	ci left: 1.250118e-03	ci right 1.358549e-03	k: 2242	n:1720000
PIK3CA   1720000 perm   1864 sec   (923 perm/sec)   p_kst 1.303488e-03   p_cons 3.488372e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 1.481617e+00	ci left: 1.272772e-06	ci right 7.548814e-06	k: 6	n:1730000
KS ci ratio: 8.255035e-02	ci left: 1.247987e-03	ci right 1.356006e-03	k: 2251	n:1730000
PIK3CA   1730000 perm   1882 sec   (919 perm/sec)   p_kst 1.301156e-03   p_cons 3.468208e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 1.481617e+00	ci left: 1.265457e-06	ci right 7.505430e-06	k: 6	n:1740000
KS ci ratio: 8.236774e-02	ci left: 1.246443e-03	ci right 1.354078e-03	k: 2261	n:1740000
PIK3CA   1740000 perm   1900 sec   (916 perm/sec)   p_kst 1.299425e-03   p_cons 3.448276e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 1.481617e+00	ci left: 1.258226e-06	ci right 7.462542e-06	k: 6	n:1750000
KS ci ratio: 8.207790e-02	ci left: 1.248276e-03	ci right 1.355671e-03	k: 2277	n:1750000
PIK3CA   1750000 perm   1918 sec   (912 perm/sec)   p_kst 1.301143e-03   p_cons 3.428571e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 1.481617e+00	ci left: 1.251077e-06	ci right 7.420141e-06	k: 6	n:1760000
KS ci ratio: 8.173760e-02	ci left: 1.251758e-03	ci right 1.358985e-03	k: 2296	n:1760000
PIK3CA   1760000 perm   1936 sec   (909 perm/sec)   p_kst 1.304545e-03   p_cons 3.409091e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 1.481617e+00	ci left: 1.244009e-06	ci right 7.378219e-06	k: 6	n:1770000
KS ci ratio: 8.154263e-02	ci left: 1.250773e-03	ci right 1.357649e-03	k: 2307	n:1770000
PIK3CA   1770000 perm   1955 sec   (906 perm/sec)   p_kst 1.303390e-03   p_cons 3.389831e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 1.481617e+00	ci left: 1.237020e-06	ci right 7.336769e-06	k: 6	n:1780000
KS ci ratio: 8.140179e-02	ci left: 1.248149e-03	ci right 1.354607e-03	k: 2315	n:1780000
PIK3CA   1780000 perm   1973 sec   (902 perm/sec)   p_kst 1.300562e-03   p_cons 3.370787e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 1.481617e+00	ci left: 1.230109e-06	ci right 7.295781e-06	k: 6	n:1790000
KS ci ratio: 8.113941e-02	ci left: 1.249386e-03	ci right 1.355590e-03	k: 2330	n:1790000
PIK3CA   1790000 perm   1991 sec   (899 perm/sec)   p_kst 1.301676e-03   p_cons 3.351955e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 1.481617e+00	ci left: 1.223276e-06	ci right 7.255249e-06	k: 6	n:1800000
KS ci ratio: 8.084505e-02	ci left: 1.251698e-03	ci right 1.357695e-03	k: 2347	n:1800000
PIK3CA   1800000 perm   2010 sec   (895 perm/sec)   p_kst 1.303889e-03   p_cons 3.333333e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 1.481617e+00	ci left: 1.216517e-06	ci right 7.215165e-06	k: 6	n:1810000
KS ci ratio: 8.067351e-02	ci left: 1.250196e-03	ci right 1.355830e-03	k: 2357	n:1810000
PIK3CA   1810000 perm   2029 sec   (892 perm/sec)   p_kst 1.302210e-03   p_cons 3.314917e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 1.481617e+00	ci left: 1.209833e-06	ci right 7.175521e-06	k: 6	n:1820000
KS ci ratio: 8.055417e-02	ci left: 1.247095e-03	ci right 1.352304e-03	k: 2364	n:1820000
PIK3CA   1820000 perm   2048 sec   (889 perm/sec)   p_kst 1.298901e-03   p_cons 3.296703e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 1.481617e+00	ci left: 1.203222e-06	ci right 7.136311e-06	k: 6	n:1830000
KS ci ratio: 8.023239e-02	ci left: 1.250454e-03	ci right 1.355505e-03	k: 2383	n:1830000
PIK3CA   1830000 perm   2067 sec   (885 perm/sec)   p_kst 1.302186e-03   p_cons 3.278689e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 1.481618e+00	ci left: 1.196683e-06	ci right 7.097527e-06	k: 6	n:1840000
KS ci ratio: 8.003125e-02	ci left: 1.250050e-03	ci right 1.354791e-03	k: 2395	n:1840000
PIK3CA   1840000 perm   2086 sec   (882 perm/sec)   p_kst 1.301630e-03   p_cons 3.260870e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 1.481618e+00	ci left: 1.190214e-06	ci right 7.059162e-06	k: 6	n:1850000
KS ci ratio: 7.979843e-02	ci left: 1.250709e-03	ci right 1.355187e-03	k: 2409	n:1850000
PIK3CA   1850000 perm   2105 sec   (879 perm/sec)   p_kst 1.302162e-03   p_cons 3.243243e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 1.481618e+00	ci left: 1.183815e-06	ci right 7.021209e-06	k: 6	n:1860000
KS ci ratio: 7.958408e-02	ci left: 1.250835e-03	ci right 1.355029e-03	k: 2422	n:1860000
PIK3CA   1860000 perm   2124 sec   (876 perm/sec)   p_kst 1.302151e-03   p_cons 3.225806e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 1.481618e+00	ci left: 1.177484e-06	ci right 6.983663e-06	k: 6	n:1870000
KS ci ratio: 7.935513e-02	ci left: 1.251484e-03	ci right 1.355418e-03	k: 2436	n:1870000
PIK3CA   1870000 perm   2143 sec   (873 perm/sec)   p_kst 1.302674e-03   p_cons 3.208556e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 1.481618e+00	ci left: 1.171221e-06	ci right 6.946516e-06	k: 6	n:1880000
KS ci ratio: 7.919288e-02	ci left: 1.250040e-03	ci right 1.353633e-03	k: 2446	n:1880000
PIK3CA   1880000 perm   2163 sec   (869 perm/sec)   p_kst 1.301064e-03   p_cons 3.191489e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 1.481618e+00	ci left: 1.165024e-06	ci right 6.909762e-06	k: 6	n:1890000
KS ci ratio: 7.896729e-02	ci left: 1.250687e-03	ci right 1.354025e-03	k: 2460	n:1890000
PIK3CA   1890000 perm   2182 sec   (866 perm/sec)   p_kst 1.301587e-03   p_cons 3.174603e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 1.481618e+00	ci left: 1.158893e-06	ci right 6.873395e-06	k: 6	n:1900000
KS ci ratio: 7.871177e-02	ci left: 1.252360e-03	ci right 1.355486e-03	k: 2476	n:1900000
PIK3CA   1900000 perm   2202 sec   (863 perm/sec)   p_kst 1.303158e-03   p_cons 3.157895e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 1.481618e+00	ci left: 1.152825e-06	ci right 6.837408e-06	k: 6	n:1910000
KS ci ratio: 7.838005e-02	ci left: 1.256582e-03	ci right 1.359599e-03	k: 2497	n:1910000
PIK3CA   1910000 perm   2221 sec   (860 perm/sec)   p_kst 1.307330e-03   p_cons 3.141361e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 1.481618e+00	ci left: 1.146821e-06	ci right 6.801797e-06	k: 6	n:1920000
KS ci ratio: 7.830189e-02	ci left: 1.252590e-03	ci right 1.355173e-03	k: 2502	n:1920000
PIK3CA   1920000 perm   2241 sec   (857 perm/sec)   p_kst 1.303125e-03   p_cons 3.125000e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 1.481618e+00	ci left: 1.140879e-06	ci right 6.766554e-06	k: 6	n:1930000
KS ci ratio: 7.808381e-02	ci left: 1.253212e-03	ci right 1.355547e-03	k: 2516	n:1930000
PIK3CA   1930000 perm   2261 sec   (854 perm/sec)   p_kst 1.303627e-03   p_cons 3.108808e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 1.481618e+00	ci left: 1.134998e-06	ci right 6.731675e-06	k: 6	n:1940000
KS ci ratio: 7.792921e-02	ci left: 1.251806e-03	ci right 1.353815e-03	k: 2526	n:1940000
PIK3CA   1940000 perm   2282 sec   (850 perm/sec)   p_kst 1.302062e-03   p_cons 3.092784e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 1.481618e+00	ci left: 1.129177e-06	ci right 6.697154e-06	k: 6	n:1950000
KS ci ratio: 7.777554e-02	ci left: 1.250415e-03	ci right 1.352101e-03	k: 2536	n:1950000
PIK3CA   1950000 perm   2302 sec   (847 perm/sec)   p_kst 1.300513e-03   p_cons 3.076923e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 1.481618e+00	ci left: 1.123416e-06	ci right 6.662985e-06	k: 6	n:1960000
KS ci ratio: 7.759227e-02	ci left: 1.250039e-03	ci right 1.351444e-03	k: 2548	n:1960000
PIK3CA   1960000 perm   2322 sec   (844 perm/sec)   p_kst 1.300000e-03   p_cons 3.061224e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 1.481618e+00	ci left: 1.117714e-06	ci right 6.629163e-06	k: 6	n:1970000
KS ci ratio: 7.733474e-02	ci left: 1.252156e-03	ci right 1.353380e-03	k: 2565	n:1970000
PIK3CA   1970000 perm   2343 sec   (841 perm/sec)   p_kst 1.302030e-03   p_cons 3.045685e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 1.481618e+00	ci left: 1.112069e-06	ci right 6.595682e-06	k: 6	n:1980000
KS ci ratio: 7.709469e-02	ci left: 1.253757e-03	ci right 1.354781e-03	k: 2581	n:1980000
PIK3CA   1980000 perm   2366 sec   (837 perm/sec)   p_kst 1.303535e-03   p_cons 3.030303e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 1.481618e+00	ci left: 1.106480e-06	ci right 6.562538e-06	k: 6	n:1990000
KS ci ratio: 7.685687e-02	ci left: 1.255342e-03	ci right 1.356168e-03	k: 2597	n:1990000
PIK3CA   1990000 perm   2388 sec   (833 perm/sec)   p_kst 1.305025e-03   p_cons 3.015075e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 1.385926e+00	ci left: 1.407183e-06	ci right 7.211324e-06	k: 7	n:2000000
KS ci ratio: 7.675366e-02	ci left: 1.252498e-03	ci right 1.352955e-03	k: 2604	n:2000000
PIK3CA   2000000 perm   2409 sec   (830 perm/sec)   p_kst 1.302000e-03   p_cons 3.500000e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 1.385926e+00	ci left: 1.400182e-06	ci right 7.175447e-06	k: 7	n:2010000
KS ci ratio: 7.659216e-02	ci left: 1.251634e-03	ci right 1.351801e-03	k: 2615	n:2010000
PIK3CA   2010000 perm   2429 sec   (827 perm/sec)   p_kst 1.300995e-03   p_cons 3.482587e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 1.385926e+00	ci left: 1.393250e-06	ci right 7.139925e-06	k: 7	n:2020000
KS ci ratio: 7.638801e-02	ci left: 1.252236e-03	ci right 1.352172e-03	k: 2629	n:2020000
PIK3CA   2020000 perm   2450 sec   (824 perm/sec)   p_kst 1.301485e-03   p_cons 3.465347e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 1.385926e+00	ci left: 1.386387e-06	ci right 7.104753e-06	k: 7	n:2030000
KS ci ratio: 7.622880e-02	ci left: 1.251383e-03	ci right 1.351034e-03	k: 2640	n:2030000
PIK3CA   2030000 perm   2471 sec   (822 perm/sec)   p_kst 1.300493e-03   p_cons 3.448276e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 1.385926e+00	ci left: 1.379591e-06	ci right 7.069926e-06	k: 7	n:2040000
KS ci ratio: 7.604187e-02	ci left: 1.251500e-03	ci right 1.350905e-03	k: 2653	n:2040000
PIK3CA   2040000 perm   2492 sec   (819 perm/sec)   p_kst 1.300490e-03   p_cons 3.431373e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 1.385926e+00	ci left: 1.372861e-06	ci right 7.035439e-06	k: 7	n:2050000
KS ci ratio: 7.581364e-02	ci left: 1.253052e-03	ci right 1.352268e-03	k: 2669	n:2050000
PIK3CA   2050000 perm   2513 sec   (816 perm/sec)   p_kst 1.301951e-03   p_cons 3.414634e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 1.385926e+00	ci left: 1.366197e-06	ci right 7.001286e-06	k: 7	n:2060000
KS ci ratio: 7.558744e-02	ci left: 1.254589e-03	ci right 1.353618e-03	k: 2685	n:2060000
PIK3CA   2060000 perm   2533 sec   (813 perm/sec)   p_kst 1.303398e-03   p_cons 3.398058e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 1.385926e+00	ci left: 1.359597e-06	ci right 6.967464e-06	k: 7	n:2070000
KS ci ratio: 7.533534e-02	ci left: 1.257060e-03	ci right 1.355938e-03	k: 2703	n:2070000
PIK3CA   2070000 perm   2554 sec   (810 perm/sec)   p_kst 1.305797e-03   p_cons 3.381643e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 1.385926e+00	ci left: 1.353060e-06	ci right 6.933966e-06	k: 7	n:2080000
KS ci ratio: 7.515490e-02	ci left: 1.257149e-03	ci right 1.355787e-03	k: 2716	n:2080000
PIK3CA   2080000 perm   2576 sec   (808 perm/sec)   p_kst 1.305769e-03   p_cons 3.365385e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 1.385926e+00	ci left: 1.346586e-06	ci right 6.900789e-06	k: 7	n:2090000
KS ci ratio: 7.490709e-02	ci left: 1.259585e-03	ci right 1.358073e-03	k: 2734	n:2090000
PIK3CA   2090000 perm   2597 sec   (805 perm/sec)   p_kst 1.308134e-03   p_cons 3.349282e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 1.385926e+00	ci left: 1.340174e-06	ci right 6.867929e-06	k: 7	n:2100000
KS ci ratio: 7.471609e-02	ci left: 1.260129e-03	ci right 1.358398e-03	k: 2748	n:2100000
PIK3CA   2100000 perm   2618 sec   (802 perm/sec)   p_kst 1.308571e-03   p_cons 3.333333e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 1.385926e+00	ci left: 1.333822e-06	ci right 6.835379e-06	k: 7	n:2110000
KS ci ratio: 7.458062e-02	ci left: 1.258807e-03	ci right 1.356788e-03	k: 2758	n:2110000
PIK3CA   2110000 perm   2640 sec   (799 perm/sec)   p_kst 1.307109e-03   p_cons 3.317536e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 1.306664e+00	ci left: 1.629167e-06	ci right 7.435453e-06	k: 8	n:2120000
KS ci ratio: 7.439210e-02	ci left: 1.259350e-03	ci right 1.357115e-03	k: 2772	n:2120000
PIK3CA   2120000 perm   2662 sec   (796 perm/sec)   p_kst 1.307547e-03   p_cons 3.773585e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 1.239610e+00	ci left: 1.932102e-06	ci right 8.021019e-06	k: 9	n:2130000
KS ci ratio: 7.416504e-02	ci left: 1.261271e-03	ci right 1.358872e-03	k: 2789	n:2130000
PIK3CA   2130000 perm   2684 sec   (794 perm/sec)   p_kst 1.309390e-03   p_cons 4.225352e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 1.239610e+00	ci left: 1.923073e-06	ci right 7.983538e-06	k: 9	n:2140000
KS ci ratio: 7.397965e-02	ci left: 1.261798e-03	ci right 1.359186e-03	k: 2803	n:2140000
PIK3CA   2140000 perm   2706 sec   (791 perm/sec)   p_kst 1.309813e-03   p_cons 4.205607e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 1.239610e+00	ci left: 1.914129e-06	ci right 7.946405e-06	k: 9	n:2150000
KS ci ratio: 7.375633e-02	ci left: 1.263690e-03	ci right 1.360917e-03	k: 2820	n:2150000
PIK3CA   2150000 perm   2728 sec   (788 perm/sec)   p_kst 1.311628e-03   p_cons 4.186047e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 1.239610e+00	ci left: 1.905267e-06	ci right 7.909616e-06	k: 9	n:2160000
KS ci ratio: 7.361299e-02	ci left: 1.262838e-03	ci right 1.359803e-03	k: 2831	n:2160000
PIK3CA   2160000 perm   2749 sec   (786 perm/sec)   p_kst 1.310648e-03   p_cons 4.166667e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 1.239610e+00	ci left: 1.896487e-06	ci right 7.873167e-06	k: 9	n:2170000
KS ci ratio: 7.338008e-02	ci left: 1.265161e-03	ci right 1.361984e-03	k: 2849	n:2170000
PIK3CA   2170000 perm   2771 sec   (783 perm/sec)   p_kst 1.312903e-03   p_cons 4.147465e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 1.239610e+00	ci left: 1.887788e-06	ci right 7.837051e-06	k: 9	n:2180000
KS ci ratio: 7.321329e-02	ci left: 1.265212e-03	ci right 1.361809e-03	k: 2862	n:2180000
PIK3CA   2180000 perm   2793 sec   (781 perm/sec)   p_kst 1.312844e-03   p_cons 4.128440e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 1.239610e+00	ci left: 1.879167e-06	ci right 7.801266e-06	k: 9	n:2190000
KS ci ratio: 7.297146e-02	ci left: 1.267952e-03	ci right 1.364425e-03	k: 2881	n:2190000
PIK3CA   2190000 perm   2815 sec   (778 perm/sec)   p_kst 1.315525e-03   p_cons 4.109589e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 1.239610e+00	ci left: 1.870626e-06	ci right 7.765805e-06	k: 9	n:2200000
KS ci ratio: 7.282003e-02	ci left: 1.267544e-03	ci right 1.363777e-03	k: 2893	n:2200000
PIK3CA   2200000 perm   2837 sec   (775 perm/sec)   p_kst 1.315000e-03   p_cons 4.090909e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 1.239610e+00	ci left: 1.862161e-06	ci right 7.730666e-06	k: 9	n:2210000
KS ci ratio: 7.268207e-02	ci left: 1.266695e-03	ci right 1.362674e-03	k: 2904	n:2210000
PIK3CA   2210000 perm   2859 sec   (773 perm/sec)   p_kst 1.314027e-03   p_cons 4.072398e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 1.239610e+00	ci left: 1.853773e-06	ci right 7.695843e-06	k: 9	n:2220000
KS ci ratio: 7.250755e-02	ci left: 1.267181e-03	ci right 1.362956e-03	k: 2918	n:2220000
PIK3CA   2220000 perm   2882 sec   (770 perm/sec)   p_kst 1.314414e-03   p_cons 4.054054e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 1.239610e+00	ci left: 1.845460e-06	ci right 7.661333e-06	k: 9	n:2230000
KS ci ratio: 7.237135e-02	ci left: 1.266342e-03	ci right 1.361866e-03	k: 2929	n:2230000
PIK3CA   2230000 perm   2904 sec   (768 perm/sec)   p_kst 1.313453e-03   p_cons 4.035874e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 1.239610e+00	ci left: 1.837222e-06	ci right 7.627131e-06	k: 9	n:2240000
KS ci ratio: 7.210102e-02	ci left: 1.270333e-03	ci right 1.365785e-03	k: 2951	n:2240000
PIK3CA   2240000 perm   2927 sec   (765 perm/sec)   p_kst 1.317411e-03   p_cons 4.017857e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 1.239610e+00	ci left: 1.829056e-06	ci right 7.593232e-06	k: 9	n:2250000
KS ci ratio: 7.187001e-02	ci left: 1.272979e-03	ci right 1.368312e-03	k: 2970	n:2250000
PIK3CA   2250000 perm   2950 sec   (763 perm/sec)   p_kst 1.320000e-03   p_cons 4.000000e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 1.239610e+00	ci left: 1.820963e-06	ci right 7.559634e-06	k: 9	n:2260000
KS ci ratio: 7.177353e-02	ci left: 1.270823e-03	ci right 1.365861e-03	k: 2978	n:2260000
PIK3CA   2260000 perm   2973 sec   (760 perm/sec)   p_kst 1.317699e-03   p_cons 3.982301e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 1.181921e+00	ci left: 2.112508e-06	ci right 8.101463e-06	k: 10	n:2270000
KS ci ratio: 7.160546e-02	ci left: 1.271281e-03	ci right 1.366121e-03	k: 2992	n:2270000
PIK3CA   2270000 perm   2995 sec   (758 perm/sec)   p_kst 1.318062e-03   p_cons 4.405286e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 1.181921e+00	ci left: 2.103243e-06	ci right 8.065931e-06	k: 10	n:2280000
KS ci ratio: 7.148618e-02	ci left: 1.270013e-03	ci right 1.364594e-03	k: 3002	n:2280000
PIK3CA   2280000 perm   3018 sec   (755 perm/sec)   p_kst 1.316667e-03   p_cons 4.385965e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 1.181921e+00	ci left: 2.094058e-06	ci right 8.030708e-06	k: 10	n:2290000
KS ci ratio: 7.133195e-02	ci left: 1.270043e-03	ci right 1.364413e-03	k: 3015	n:2290000
PIK3CA   2290000 perm   3040 sec   (753 perm/sec)   p_kst 1.316594e-03   p_cons 4.366812e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 1.181921e+00	ci left: 2.084954e-06	ci right 7.995792e-06	k: 10	n:2300000
KS ci ratio: 7.115520e-02	ci left: 1.270926e-03	ci right 1.365119e-03	k: 3030	n:2300000
PIK3CA   2300000 perm   3063 sec   (751 perm/sec)   p_kst 1.317391e-03   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 1.181921e+00	ci left: 2.075928e-06	ci right 7.961179e-06	k: 10	n:2310000
KS ci ratio: 7.099143e-02	ci left: 1.271377e-03	ci right 1.365378e-03	k: 3044	n:2310000
PIK3CA   2310000 perm   3086 sec   (749 perm/sec)   p_kst 1.317749e-03   p_cons 4.329004e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 1.131603e+00	ci left: 2.366882e-06	ci right 8.483621e-06	k: 11	n:2320000
KS ci ratio: 7.085197e-02	ci left: 1.270978e-03	ci right 1.364757e-03	k: 3056	n:2320000
PIK3CA   2320000 perm   3109 sec   (746 perm/sec)   p_kst 1.317241e-03   p_cons 4.741379e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 1.131603e+00	ci left: 2.356723e-06	ci right 8.447211e-06	k: 11	n:2330000
KS ci ratio: 7.073642e-02	ci left: 1.269739e-03	ci right 1.363267e-03	k: 3066	n:2330000
PIK3CA   2330000 perm   3132 sec   (744 perm/sec)   p_kst 1.315880e-03   p_cons 4.721030e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 1.131603e+00	ci left: 2.346652e-06	ci right 8.411112e-06	k: 11	n:2340000
KS ci ratio: 7.067895e-02	ci left: 1.266412e-03	ci right 1.359616e-03	k: 3071	n:2340000
PIK3CA   2340000 perm   3155 sec   (742 perm/sec)   p_kst 1.312393e-03   p_cons 4.700855e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 1.131603e+00	ci left: 2.336666e-06	ci right 8.375320e-06	k: 11	n:2350000
KS ci ratio: 7.048414e-02	ci left: 1.268129e-03	ci right 1.361192e-03	k: 3088	n:2350000
PIK3CA   2350000 perm   3179 sec   (739 perm/sec)   p_kst 1.314043e-03   p_cons 4.680851e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 1.131603e+00	ci left: 2.326765e-06	ci right 8.339831e-06	k: 11	n:2360000
KS ci ratio: 7.033629e-02	ci left: 1.268167e-03	ci right 1.361030e-03	k: 3101	n:2360000
PIK3CA   2360000 perm   3203 sec   (737 perm/sec)   p_kst 1.313983e-03   p_cons 4.661017e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 1.131603e+00	ci left: 2.316948e-06	ci right 8.304642e-06	k: 11	n:2370000
KS ci ratio: 7.022324e-02	ci left: 1.266961e-03	ci right 1.359580e-03	k: 3111	n:2370000
PIK3CA   2370000 perm   3226 sec   (735 perm/sec)   p_kst 1.312658e-03   p_cons 4.641350e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 1.131603e+00	ci left: 2.307212e-06	ci right 8.269749e-06	k: 11	n:2380000
KS ci ratio: 7.004337e-02	ci left: 1.268243e-03	ci right 1.360708e-03	k: 3127	n:2380000
PIK3CA   2380000 perm   3249 sec   (733 perm/sec)   p_kst 1.313866e-03   p_cons 4.621849e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 1.131603e+00	ci left: 2.297559e-06	ci right 8.235148e-06	k: 11	n:2390000
KS ci ratio: 6.994288e-02	ci left: 1.266636e-03	ci right 1.358847e-03	k: 3136	n:2390000
PIK3CA   2390000 perm   3272 sec   (730 perm/sec)   p_kst 1.312134e-03   p_cons 4.602510e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 1.131603e+00	ci left: 2.287986e-06	ci right 8.200835e-06	k: 11	n:2400000
KS ci ratio: 6.980950e-02	ci left: 1.266271e-03	ci right 1.358272e-03	k: 3148	n:2400000
PIK3CA   2400000 perm   3296 sec   (728 perm/sec)   p_kst 1.311667e-03   p_cons 4.583333e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 1.131603e+00	ci left: 2.278492e-06	ci right 8.166806e-06	k: 11	n:2410000
KS ci ratio: 6.966585e-02	ci left: 1.266317e-03	ci right 1.358124e-03	k: 3161	n:2410000
PIK3CA   2410000 perm   3320 sec   (726 perm/sec)   p_kst 1.311618e-03   p_cons 4.564315e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 1.131603e+00	ci left: 2.269077e-06	ci right 8.133059e-06	k: 11	n:2420000
KS ci ratio: 6.946833e-02	ci left: 1.268393e-03	ci right 1.360080e-03	k: 3179	n:2420000
PIK3CA   2420000 perm   3344 sec   (724 perm/sec)   p_kst 1.313636e-03   p_cons 4.545455e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 1.131604e+00	ci left: 2.259739e-06	ci right 8.099590e-06	k: 11	n:2430000
KS ci ratio: 6.933765e-02	ci left: 1.268026e-03	ci right 1.359507e-03	k: 3191	n:2430000
PIK3CA   2430000 perm   3368 sec   (721 perm/sec)   p_kst 1.313169e-03   p_cons 4.526749e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 1.131604e+00	ci left: 2.250478e-06	ci right 8.066395e-06	k: 11	n:2440000
KS ci ratio: 6.922934e-02	ci left: 1.266856e-03	ci right 1.358104e-03	k: 3201	n:2440000
PIK3CA   2440000 perm   3392 sec   (719 perm/sec)   p_kst 1.311885e-03   p_cons 4.508197e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 1.131604e+00	ci left: 2.241292e-06	ci right 8.033471e-06	k: 11	n:2450000
KS ci ratio: 6.912153e-02	ci left: 1.265697e-03	ci right 1.356713e-03	k: 3211	n:2450000
PIK3CA   2450000 perm   3417 sec   (717 perm/sec)   p_kst 1.310612e-03   p_cons 4.489796e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 1.131604e+00	ci left: 2.232181e-06	ci right 8.000815e-06	k: 11	n:2460000
KS ci ratio: 6.898208e-02	ci left: 1.265745e-03	ci right 1.356574e-03	k: 3224	n:2460000
PIK3CA   2460000 perm   3441 sec   (715 perm/sec)   p_kst 1.310569e-03   p_cons 4.471545e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 1.131604e+00	ci left: 2.223144e-06	ci right 7.968423e-06	k: 11	n:2470000
KS ci ratio: 6.877968e-02	ci left: 1.268180e-03	ci right 1.358906e-03	k: 3243	n:2470000
PIK3CA   2470000 perm   3466 sec   (713 perm/sec)   p_kst 1.312955e-03   p_cons 4.453441e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 1.131604e+00	ci left: 2.214180e-06	ci right 7.936292e-06	k: 11	n:2480000
KS ci ratio: 6.865284e-02	ci left: 1.267822e-03	ci right 1.358349e-03	k: 3255	n:2480000
PIK3CA   2480000 perm   3491 sec   (710 perm/sec)   p_kst 1.312500e-03   p_cons 4.435484e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 1.131604e+00	ci left: 2.205287e-06	ci right 7.904419e-06	k: 11	n:2490000
KS ci ratio: 6.851620e-02	ci left: 1.267862e-03	ci right 1.358204e-03	k: 3268	n:2490000
PIK3CA   2490000 perm   3516 sec   (708 perm/sec)   p_kst 1.312450e-03   p_cons 4.417671e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 1.131604e+00	ci left: 2.196466e-06	ci right 7.872802e-06	k: 11	n:2500000
KS ci ratio: 6.836994e-02	ci left: 1.268295e-03	ci right 1.358467e-03	k: 3282	n:2500000
PIK3CA   2500000 perm   3540 sec   (706 perm/sec)   p_kst 1.312800e-03   p_cons 4.400000e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 1.131604e+00	ci left: 2.187715e-06	ci right 7.841436e-06	k: 11	n:2510000
KS ci ratio: 6.828686e-02	ci left: 1.266374e-03	ci right 1.356297e-03	k: 3290	n:2510000
PIK3CA   2510000 perm   3568 sec   (703 perm/sec)   p_kst 1.310757e-03   p_cons 4.382470e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 1.131604e+00	ci left: 2.179034e-06	ci right 7.810319e-06	k: 11	n:2520000
KS ci ratio: 6.821443e-02	ci left: 1.264079e-03	ci right 1.353740e-03	k: 3297	n:2520000
PIK3CA   2520000 perm   3594 sec   (701 perm/sec)   p_kst 1.308333e-03   p_cons 4.365079e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 1.131604e+00	ci left: 2.170421e-06	ci right 7.779449e-06	k: 11	n:2530000
KS ci ratio: 6.810099e-02	ci left: 1.263357e-03	ci right 1.352811e-03	k: 3308	n:2530000
PIK3CA   2530000 perm   3619 sec   (699 perm/sec)   p_kst 1.307510e-03   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 1.131604e+00	ci left: 2.161876e-06	ci right 7.748821e-06	k: 11	n:2540000
KS ci ratio: 6.804970e-02	ci left: 1.260318e-03	ci right 1.349487e-03	k: 3313	n:2540000
PIK3CA   2540000 perm   3645 sec   (697 perm/sec)   p_kst 1.304331e-03   p_cons 4.330709e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 1.131604e+00	ci left: 2.153398e-06	ci right 7.718433e-06	k: 11	n:2550000
KS ci ratio: 6.788598e-02	ci left: 1.261543e-03	ci right 1.350576e-03	k: 3329	n:2550000
PIK3CA   2550000 perm   3670 sec   (695 perm/sec)   p_kst 1.305490e-03   p_cons 4.313725e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 1.131604e+00	ci left: 2.144986e-06	ci right 7.688283e-06	k: 11	n:2560000
KS ci ratio: 6.778432e-02	ci left: 1.260455e-03	ci right 1.349273e-03	k: 3339	n:2560000
PIK3CA   2560000 perm   3696 sec   (693 perm/sec)   p_kst 1.304297e-03   p_cons 4.296875e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 1.131604e+00	ci left: 2.136640e-06	ci right 7.658368e-06	k: 11	n:2570000
KS ci ratio: 6.761242e-02	ci left: 1.262054e-03	ci right 1.350749e-03	k: 3356	n:2570000
PIK3CA   2570000 perm   3721 sec   (691 perm/sec)   p_kst 1.305837e-03   p_cons 4.280156e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 1.131604e+00	ci left: 2.128359e-06	ci right 7.628684e-06	k: 11	n:2580000
KS ci ratio: 6.750194e-02	ci left: 1.261353e-03	ci right 1.349849e-03	k: 3367	n:2580000
PIK3CA   2580000 perm   3745 sec   (689 perm/sec)   p_kst 1.305039e-03   p_cons 4.263566e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 1.131604e+00	ci left: 2.120141e-06	ci right 7.599230e-06	k: 11	n:2590000
KS ci ratio: 6.734214e-02	ci left: 1.262557e-03	ci right 1.350919e-03	k: 3383	n:2590000
PIK3CA   2590000 perm   3771 sec   (687 perm/sec)   p_kst 1.306178e-03   p_cons 4.247104e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 1.131604e+00	ci left: 2.111987e-06	ci right 7.570002e-06	k: 11	n:2600000
KS ci ratio: 6.719336e-02	ci left: 1.263373e-03	ci right 1.351590e-03	k: 3398	n:2600000
PIK3CA   2600000 perm   3796 sec   (685 perm/sec)   p_kst 1.306923e-03   p_cons 4.230769e-06   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 1.131604e+00	ci left: 2.103895e-06	ci right 7.540998e-06	k: 11	n:2610000
KS ci ratio: 6.701608e-02	ci left: 1.265313e-03	ci right 1.353423e-03	k: 3416	n:2610000
PIK3CA   2610000 perm   3822 sec   (683 perm/sec)   p_kst 1.308812e-03   p_cons 4.214559e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 1.131604e+00	ci left: 2.095865e-06	ci right 7.512216e-06	k: 11	n:2620000
KS ci ratio: 6.686944e-02	ci left: 1.266113e-03	ci right 1.354079e-03	k: 3431	n:2620000
PIK3CA   2620000 perm   3847 sec   (681 perm/sec)   p_kst 1.309542e-03   p_cons 4.198473e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 1.131604e+00	ci left: 2.087895e-06	ci right 7.483652e-06	k: 11	n:2630000
KS ci ratio: 6.678199e-02	ci left: 1.264664e-03	ci right 1.352409e-03	k: 3440	n:2630000
PIK3CA   2630000 perm   3872 sec   (679 perm/sec)   p_kst 1.307985e-03   p_cons 4.182510e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 1.131604e+00	ci left: 2.079987e-06	ci right 7.455305e-06	k: 11	n:2640000
KS ci ratio: 6.665620e-02	ci left: 1.264716e-03	ci right 1.352293e-03	k: 3453	n:2640000
PIK3CA   2640000 perm   3898 sec   (677 perm/sec)   p_kst 1.307955e-03   p_cons 4.166667e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 1.087210e+00	ci left: 2.339842e-06	ci right 7.910019e-06	k: 12	n:2650000
KS ci ratio: 6.650231e-02	ci left: 1.265881e-03	ci right 1.353328e-03	k: 3469	n:2650000
PIK3CA   2650000 perm   3923 sec   (675 perm/sec)   p_kst 1.309057e-03   p_cons 4.528302e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 1.087210e+00	ci left: 2.331045e-06	ci right 7.880282e-06	k: 12	n:2660000
KS ci ratio: 6.629238e-02	ci left: 1.269255e-03	ci right 1.356648e-03	k: 3491	n:2660000
PIK3CA   2660000 perm   3950 sec   (673 perm/sec)   p_kst 1.312406e-03   p_cons 4.511278e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 1.087210e+00	ci left: 2.322315e-06	ci right 7.850768e-06	k: 12	n:2670000
KS ci ratio: 6.617878e-02	ci left: 1.268921e-03	ci right 1.356136e-03	k: 3503	n:2670000
PIK3CA   2670000 perm   3976 sec   (672 perm/sec)   p_kst 1.311985e-03   p_cons 4.494382e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 1.087210e+00	ci left: 2.313649e-06	ci right 7.821474e-06	k: 12	n:2680000
KS ci ratio: 6.606577e-02	ci left: 1.268590e-03	ci right 1.355628e-03	k: 3515	n:2680000
PIK3CA   2680000 perm   4002 sec   (670 perm/sec)   p_kst 1.311567e-03   p_cons 4.477612e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 1.087210e+00	ci left: 2.305049e-06	ci right 7.792398e-06	k: 12	n:2690000
KS ci ratio: 6.598142e-02	ci left: 1.267165e-03	ci right 1.353989e-03	k: 3524	n:2690000
PIK3CA   2690000 perm   4032 sec   (667 perm/sec)   p_kst 1.310037e-03   p_cons 4.460967e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 1.087210e+00	ci left: 2.296511e-06	ci right 7.763537e-06	k: 12	n:2700000
KS ci ratio: 6.584146e-02	ci left: 1.267935e-03	ci right 1.354621e-03	k: 3539	n:2700000
PIK3CA   2700000 perm   4059 sec   (665 perm/sec)   p_kst 1.310741e-03   p_cons 4.444444e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 1.087210e+00	ci left: 2.288037e-06	ci right 7.734889e-06	k: 12	n:2710000
KS ci ratio: 6.573016e-02	ci left: 1.267612e-03	ci right 1.354124e-03	k: 3551	n:2710000
PIK3CA   2710000 perm   4086 sec   (663 perm/sec)   p_kst 1.310332e-03   p_cons 4.428044e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 1.087210e+00	ci left: 2.279625e-06	ci right 7.706452e-06	k: 12	n:2720000
KS ci ratio: 6.557338e-02	ci left: 1.269099e-03	ci right 1.355498e-03	k: 3568	n:2720000
PIK3CA   2720000 perm   4112 sec   (661 perm/sec)   p_kst 1.311765e-03   p_cons 4.411765e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 1.087210e+00	ci left: 2.271275e-06	ci right 7.678224e-06	k: 12	n:2730000
KS ci ratio: 6.544514e-02	ci left: 1.269494e-03	ci right 1.355745e-03	k: 3582	n:2730000
PIK3CA   2730000 perm   4139 sec   (660 perm/sec)   p_kst 1.312088e-03   p_cons 4.395604e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 1.087210e+00	ci left: 2.262986e-06	ci right 7.650201e-06	k: 12	n:2740000
KS ci ratio: 6.533584e-02	ci left: 1.269169e-03	ci right 1.355248e-03	k: 3594	n:2740000
PIK3CA   2740000 perm   4166 sec   (658 perm/sec)   p_kst 1.311679e-03   p_cons 4.379562e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 1.087210e+00	ci left: 2.254757e-06	ci right 7.622382e-06	k: 12	n:2750000
KS ci ratio: 6.516379e-02	ci left: 1.271350e-03	ci right 1.357342e-03	k: 3613	n:2750000
PIK3CA   2750000 perm   4193 sec   (656 perm/sec)   p_kst 1.313818e-03   p_cons 4.363636e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 1.087210e+00	ci left: 2.246587e-06	ci right 7.594765e-06	k: 12	n:2760000
KS ci ratio: 6.509185e-02	ci left: 1.269595e-03	ci right 1.355369e-03	k: 3621	n:2760000
PIK3CA   2760000 perm   4219 sec   (654 perm/sec)   p_kst 1.311957e-03   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 1.087210e+00	ci left: 2.238477e-06	ci right 7.567347e-06	k: 12	n:2770000
KS ci ratio: 6.495746e-02	ci left: 1.270339e-03	ci right 1.355980e-03	k: 3636	n:2770000
PIK3CA   2770000 perm   4247 sec   (652 perm/sec)   p_kst 1.312635e-03   p_cons 4.332130e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 1.087210e+00	ci left: 2.230425e-06	ci right 7.540126e-06	k: 12	n:2780000
KS ci ratio: 6.489511e-02	ci left: 1.268247e-03	ci right 1.353661e-03	k: 3643	n:2780000
PIK3CA   2780000 perm   4274 sec   (650 perm/sec)   p_kst 1.310432e-03   p_cons 4.316547e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 1.087210e+00	ci left: 2.222430e-06	ci right 7.513101e-06	k: 12	n:2790000
KS ci ratio: 6.476193e-02	ci left: 1.268990e-03	ci right 1.354272e-03	k: 3658	n:2790000
PIK3CA   2790000 perm   4302 sec   (649 perm/sec)   p_kst 1.311111e-03   p_cons 4.301075e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 1.087210e+00	ci left: 2.214493e-06	ci right 7.486268e-06	k: 12	n:2800000
KS ci ratio: 6.462957e-02	ci left: 1.269729e-03	ci right 1.354880e-03	k: 3673	n:2800000
PIK3CA   2800000 perm   4329 sec   (647 perm/sec)   p_kst 1.311786e-03   p_cons 4.285714e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 1.087210e+00	ci left: 2.206612e-06	ci right 7.459627e-06	k: 12	n:2810000
KS ci ratio: 6.452430e-02	ci left: 1.269411e-03	ci right 1.354397e-03	k: 3685	n:2810000
PIK3CA   2810000 perm   4356 sec   (645 perm/sec)   p_kst 1.311388e-03   p_cons 4.270463e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 1.087210e+00	ci left: 2.198787e-06	ci right 7.433174e-06	k: 12	n:2820000
KS ci ratio: 6.444572e-02	ci left: 1.268050e-03	ci right 1.352837e-03	k: 3694	n:2820000
PIK3CA   2820000 perm   4384 sec   (643 perm/sec)   p_kst 1.309929e-03   p_cons 4.255319e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 1.087210e+00	ci left: 2.191018e-06	ci right 7.406909e-06	k: 12	n:2830000
KS ci ratio: 6.428926e-02	ci left: 1.269827e-03	ci right 1.354520e-03	k: 3712	n:2830000
PIK3CA   2830000 perm   4412 sec   (641 perm/sec)   p_kst 1.311661e-03   p_cons 4.240283e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 1.087210e+00	ci left: 2.183303e-06	ci right 7.380828e-06	k: 12	n:2840000
KS ci ratio: 6.415977e-02	ci left: 1.270553e-03	ci right 1.355117e-03	k: 3727	n:2840000
PIK3CA   2840000 perm   4439 sec   (640 perm/sec)   p_kst 1.312324e-03   p_cons 4.225352e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 1.087210e+00	ci left: 2.175642e-06	ci right 7.354931e-06	k: 12	n:2850000
KS ci ratio: 6.402250e-02	ci left: 1.271619e-03	ci right 1.356066e-03	k: 3743	n:2850000
PIK3CA   2850000 perm   4467 sec   (638 perm/sec)   p_kst 1.313333e-03   p_cons 4.210526e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 1.047661e+00	ci left: 2.420265e-06	ci right 7.772853e-06	k: 13	n:2860000
KS ci ratio: 6.387760e-02	ci left: 1.273022e-03	ci right 1.357364e-03	k: 3760	n:2860000
PIK3CA   2860000 perm   4495 sec   (636 perm/sec)   p_kst 1.314685e-03   p_cons 4.545455e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 1.047661e+00	ci left: 2.411832e-06	ci right 7.745770e-06	k: 13	n:2870000
KS ci ratio: 6.380983e-02	ci left: 1.271329e-03	ci right 1.355466e-03	k: 3768	n:2870000
PIK3CA   2870000 perm   4523 sec   (635 perm/sec)   p_kst 1.312892e-03   p_cons 4.529617e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 1.047661e+00	ci left: 2.403458e-06	ci right 7.718875e-06	k: 13	n:2880000
KS ci ratio: 6.372538e-02	ci left: 1.270332e-03	ci right 1.354287e-03	k: 3778	n:2880000
PIK3CA   2880000 perm   4551 sec   (633 perm/sec)   p_kst 1.311806e-03   p_cons 4.513889e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 1.047661e+00	ci left: 2.395141e-06	ci right 7.692166e-06	k: 13	n:2890000
KS ci ratio: 6.360766e-02	ci left: 1.270703e-03	ci right 1.354523e-03	k: 3792	n:2890000
PIK3CA   2890000 perm   4579 sec   (631 perm/sec)   p_kst 1.312111e-03   p_cons 4.498270e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 1.047661e+00	ci left: 2.386882e-06	ci right 7.665642e-06	k: 13	n:2900000
KS ci ratio: 6.350729e-02	ci left: 1.270394e-03	ci right 1.354055e-03	k: 3804	n:2900000
PIK3CA   2900000 perm   4607 sec   (629 perm/sec)   p_kst 1.311724e-03   p_cons 4.482759e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 1.047661e+00	ci left: 2.378680e-06	ci right 7.639299e-06	k: 13	n:2910000
KS ci ratio: 6.339077e-02	ci left: 1.270763e-03	ci right 1.354290e-03	k: 3818	n:2910000
PIK3CA   2910000 perm   4635 sec   (628 perm/sec)   p_kst 1.312027e-03   p_cons 4.467354e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 1.047661e+00	ci left: 2.370534e-06	ci right 7.613137e-06	k: 13	n:2920000
KS ci ratio: 6.325010e-02	ci left: 1.272141e-03	ci right 1.355566e-03	k: 3835	n:2920000
PIK3CA   2920000 perm   4664 sec   (626 perm/sec)   p_kst 1.313356e-03   p_cons 4.452055e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 1.047661e+00	ci left: 2.362443e-06	ci right 7.587154e-06	k: 13	n:2930000
KS ci ratio: 6.313499e-02	ci left: 1.272501e-03	ci right 1.355793e-03	k: 3849	n:2930000
PIK3CA   2930000 perm   4692 sec   (624 perm/sec)   p_kst 1.313652e-03   p_cons 4.436860e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 1.047661e+00	ci left: 2.354408e-06	ci right 7.561347e-06	k: 13	n:2940000
KS ci ratio: 6.305319e-02	ci left: 1.271521e-03	ci right 1.354636e-03	k: 3859	n:2940000
PIK3CA   2940000 perm   4720 sec   (623 perm/sec)   p_kst 1.312585e-03   p_cons 4.421769e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 1.047661e+00	ci left: 2.346427e-06	ci right 7.535716e-06	k: 13	n:2950000
KS ci ratio: 6.290663e-02	ci left: 1.273216e-03	ci right 1.356242e-03	k: 3877	n:2950000
PIK3CA   2950000 perm   4749 sec   (621 perm/sec)   p_kst 1.314237e-03   p_cons 4.406780e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 1.047661e+00	ci left: 2.338499e-06	ci right 7.510257e-06	k: 13	n:2960000
KS ci ratio: 6.277723e-02	ci left: 1.274235e-03	ci right 1.357151e-03	k: 3893	n:2960000
PIK3CA   2960000 perm   4777 sec   (620 perm/sec)   p_kst 1.315203e-03   p_cons 4.391892e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 1.047661e+00	ci left: 2.330626e-06	ci right 7.484970e-06	k: 13	n:2970000
KS ci ratio: 6.265665e-02	ci left: 1.274916e-03	ci right 1.357711e-03	k: 3908	n:2970000
PIK3CA   2970000 perm   4806 sec   (618 perm/sec)   p_kst 1.315825e-03   p_cons 4.377104e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 1.047661e+00	ci left: 2.322805e-06	ci right 7.459853e-06	k: 13	n:2980000
KS ci ratio: 6.256870e-02	ci left: 1.274272e-03	ci right 1.356904e-03	k: 3919	n:2980000
PIK3CA   2980000 perm   4835 sec   (616 perm/sec)   p_kst 1.315101e-03   p_cons 4.362416e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 1.047661e+00	ci left: 2.315036e-06	ci right 7.434904e-06	k: 13	n:2990000
KS ci ratio: 6.244931e-02	ci left: 1.274948e-03	ci right 1.357461e-03	k: 3934	n:2990000
PIK3CA   2990000 perm   4864 sec   (615 perm/sec)   p_kst 1.315719e-03   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 1.047661e+00	ci left: 2.307319e-06	ci right 7.410121e-06	k: 13	n:3000000
KS ci ratio: 6.234641e-02	ci left: 1.274964e-03	ci right 1.357337e-03	k: 3947	n:3000000
PIK3CA   3000000 perm   4893 sec   (613 perm/sec)   p_kst 1.315667e-03   p_cons 4.333333e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 1.047661e+00	ci left: 2.299654e-06	ci right 7.385502e-06	k: 13	n:3010000
KS ci ratio: 6.223615e-02	ci left: 1.275307e-03	ci right 1.357551e-03	k: 3961	n:3010000
PIK3CA   3010000 perm   4922 sec   (612 perm/sec)   p_kst 1.315947e-03   p_cons 4.318937e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 1.047661e+00	ci left: 2.292039e-06	ci right 7.361047e-06	k: 13	n:3020000
KS ci ratio: 6.216563e-02	ci left: 1.274018e-03	ci right 1.356082e-03	k: 3970	n:3020000
PIK3CA   3020000 perm   4952 sec   (610 perm/sec)   p_kst 1.314570e-03   p_cons 4.304636e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 1.047661e+00	ci left: 2.284475e-06	ci right 7.336753e-06	k: 13	n:3030000
KS ci ratio: 6.203295e-02	ci left: 1.275337e-03	ci right 1.357304e-03	k: 3987	n:3030000
PIK3CA   3030000 perm   4980 sec   (608 perm/sec)   p_kst 1.315842e-03   p_cons 4.290429e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 1.047661e+00	ci left: 2.276960e-06	ci right 7.312619e-06	k: 13	n:3040000
KS ci ratio: 6.190111e-02	ci left: 1.276647e-03	ci right 1.358518e-03	k: 4004	n:3040000
PIK3CA   3040000 perm   5010 sec   (607 perm/sec)   p_kst 1.317105e-03   p_cons 4.276316e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 1.047661e+00	ci left: 2.269495e-06	ci right 7.288643e-06	k: 13	n:3050000
KS ci ratio: 6.179320e-02	ci left: 1.276980e-03	ci right 1.358725e-03	k: 4018	n:3050000
PIK3CA   3050000 perm   5040 sec   (605 perm/sec)   p_kst 1.317377e-03   p_cons 4.262295e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 1.047662e+00	ci left: 2.262078e-06	ci right 7.264824e-06	k: 13	n:3060000
KS ci ratio: 6.165523e-02	ci left: 1.278599e-03	ci right 1.360258e-03	k: 4036	n:3060000
PIK3CA   3060000 perm   5069 sec   (604 perm/sec)   p_kst 1.318954e-03   p_cons 4.248366e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 1.047662e+00	ci left: 2.254710e-06	ci right 7.241160e-06	k: 13	n:3070000
KS ci ratio: 6.157905e-02	ci left: 1.277641e-03	ci right 1.359135e-03	k: 4046	n:3070000
PIK3CA   3070000 perm   5098 sec   (602 perm/sec)   p_kst 1.317915e-03   p_cons 4.234528e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 1.047662e+00	ci left: 2.247389e-06	ci right 7.217650e-06	k: 13	n:3080000
KS ci ratio: 6.148796e-02	ci left: 1.277329e-03	ci right 1.358678e-03	k: 4058	n:3080000
PIK3CA   3080000 perm   5128 sec   (601 perm/sec)   p_kst 1.317532e-03   p_cons 4.220779e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 1.047662e+00	ci left: 2.240116e-06	ci right 7.194292e-06	k: 13	n:3090000
KS ci ratio: 6.140484e-02	ci left: 1.276701e-03	ci right 1.357896e-03	k: 4069	n:3090000
PIK3CA   3090000 perm   5158 sec   (599 perm/sec)   p_kst 1.316828e-03   p_cons 4.207120e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 1.047662e+00	ci left: 2.232890e-06	ci right 7.171085e-06	k: 13	n:3100000
KS ci ratio: 6.134463e-02	ci left: 1.275123e-03	ci right 1.356135e-03	k: 4077	n:3100000
PIK3CA   3100000 perm   5188 sec   (598 perm/sec)   p_kst 1.315161e-03   p_cons 4.193548e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 1.047662e+00	ci left: 2.225710e-06	ci right 7.148027e-06	k: 13	n:3110000
KS ci ratio: 6.124709e-02	ci left: 1.275139e-03	ci right 1.356019e-03	k: 4090	n:3110000
PIK3CA   3110000 perm   5218 sec   (596 perm/sec)   p_kst 1.315113e-03   p_cons 4.180064e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 1.047662e+00	ci left: 2.218576e-06	ci right 7.125116e-06	k: 13	n:3120000
KS ci ratio: 6.115747e-02	ci left: 1.274839e-03	ci right 1.355578e-03	k: 4102	n:3120000
PIK3CA   3120000 perm   5248 sec   (595 perm/sec)   p_kst 1.314744e-03   p_cons 4.166667e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 1.047662e+00	ci left: 2.211488e-06	ci right 7.102352e-06	k: 13	n:3130000
KS ci ratio: 6.105339e-02	ci left: 1.275171e-03	ci right 1.355788e-03	k: 4116	n:3130000
PIK3CA   3130000 perm   5278 sec   (593 perm/sec)   p_kst 1.315016e-03   p_cons 4.153355e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 1.047662e+00	ci left: 2.204445e-06	ci right 7.079734e-06	k: 13	n:3140000
KS ci ratio: 6.095722e-02	ci left: 1.275187e-03	ci right 1.355674e-03	k: 4129	n:3140000
PIK3CA   3140000 perm   5308 sec   (592 perm/sec)   p_kst 1.314968e-03   p_cons 4.140127e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 1.047662e+00	ci left: 2.197447e-06	ci right 7.057258e-06	k: 13	n:3150000
KS ci ratio: 6.081009e-02	ci left: 1.277391e-03	ci right 1.357816e-03	k: 4149	n:3150000
PIK3CA   3150000 perm   5339 sec   (590 perm/sec)   p_kst 1.317143e-03   p_cons 4.126984e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 1.047662e+00	ci left: 2.190493e-06	ci right 7.034925e-06	k: 13	n:3160000
KS ci ratio: 6.072968e-02	ci left: 1.276777e-03	ci right 1.357053e-03	k: 4160	n:3160000
PIK3CA   3160000 perm   5369 sec   (589 perm/sec)   p_kst 1.316456e-03   p_cons 4.113924e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 1.047662e+00	ci left: 2.183583e-06	ci right 7.012733e-06	k: 13	n:3170000
KS ci ratio: 6.060597e-02	ci left: 1.278031e-03	ci right 1.358216e-03	k: 4177	n:3170000
PIK3CA   3170000 perm   5399 sec   (587 perm/sec)   p_kst 1.317666e-03   p_cons 4.100946e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 1.047662e+00	ci left: 2.176716e-06	ci right 6.990680e-06	k: 13	n:3180000
KS ci ratio: 6.051190e-02	ci left: 1.278038e-03	ci right 1.358095e-03	k: 4190	n:3180000
PIK3CA   3180000 perm   5429 sec   (586 perm/sec)   p_kst 1.317610e-03   p_cons 4.088050e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 1.012137e+00	ci left: 2.399353e-06	ci right 7.363507e-06	k: 14	n:3190000
KS ci ratio: 6.042547e-02	ci left: 1.277736e-03	ci right 1.357656e-03	k: 4202	n:3190000
PIK3CA   3190000 perm   5459 sec   (584 perm/sec)   p_kst 1.317241e-03   p_cons 4.388715e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 1.012137e+00	ci left: 2.391855e-06	ci right 7.340496e-06	k: 14	n:3200000
KS ci ratio: 6.030360e-02	ci left: 1.278976e-03	ci right 1.358806e-03	k: 4219	n:3200000
PIK3CA   3200000 perm   5490 sec   (583 perm/sec)   p_kst 1.318437e-03   p_cons 4.375000e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 1.012137e+00	ci left: 2.384404e-06	ci right 7.317628e-06	k: 14	n:3210000
KS ci ratio: 6.021805e-02	ci left: 1.278674e-03	ci right 1.358368e-03	k: 4231	n:3210000
PIK3CA   3210000 perm   5521 sec   (581 perm/sec)   p_kst 1.318069e-03   p_cons 4.361371e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 1.012137e+00	ci left: 2.376999e-06	ci right 7.294903e-06	k: 14	n:3220000
KS ci ratio: 6.011160e-02	ci left: 1.279291e-03	ci right 1.358877e-03	k: 4246	n:3220000
PIK3CA   3220000 perm   5552 sec   (580 perm/sec)   p_kst 1.318634e-03   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 1.012137e+00	ci left: 2.369640e-06	ci right 7.272318e-06	k: 14	n:3230000
KS ci ratio: 6.004098e-02	ci left: 1.278380e-03	ci right 1.357813e-03	k: 4256	n:3230000
PIK3CA   3230000 perm   5583 sec   (579 perm/sec)   p_kst 1.317647e-03   p_cons 4.334365e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 1.012137e+00	ci left: 2.362326e-06	ci right 7.249872e-06	k: 14	n:3240000
KS ci ratio: 5.992844e-02	ci left: 1.279298e-03	ci right 1.358634e-03	k: 4272	n:3240000
PIK3CA   3240000 perm   5614 sec   (577 perm/sec)   p_kst 1.318519e-03   p_cons 4.320988e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 1.012137e+00	ci left: 2.355057e-06	ci right 7.227565e-06	k: 14	n:3250000
KS ci ratio: 5.982351e-02	ci left: 1.279908e-03	ci right 1.359138e-03	k: 4287	n:3250000
PIK3CA   3250000 perm   5645 sec   (576 perm/sec)   p_kst 1.319077e-03   p_cons 4.307692e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 1.012137e+00	ci left: 2.347833e-06	ci right 7.205395e-06	k: 14	n:3260000
KS ci ratio: 5.973304e-02	ci left: 1.279910e-03	ci right 1.359017e-03	k: 4300	n:3260000
PIK3CA   3260000 perm   5676 sec   (574 perm/sec)   p_kst 1.319018e-03   p_cons 4.294479e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 1.306665e+00	ci left: 1.056218e-06	ci right 4.820541e-06	k: 8	n:3270000
KS ci ratio: 5.967068e-02	ci left: 1.278707e-03	ci right 1.357654e-03	k: 4309	n:3270000
PIK3CA   3270000 perm   5708 sec   (573 perm/sec)   p_kst 1.317737e-03   p_cons 2.446483e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 1.306665e+00	ci left: 1.052998e-06	ci right 4.805845e-06	k: 8	n:3280000
KS ci ratio: 5.958779e-02	ci left: 1.278413e-03	ci right 1.357228e-03	k: 4321	n:3280000
PIK3CA   3280000 perm   5739 sec   (572 perm/sec)   p_kst 1.317378e-03   p_cons 2.439024e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 1.306665e+00	ci left: 1.049798e-06	ci right 4.791237e-06	k: 8	n:3290000
KS ci ratio: 5.948464e-02	ci left: 1.279018e-03	ci right 1.357730e-03	k: 4336	n:3290000
PIK3CA   3290000 perm   5771 sec   (570 perm/sec)   p_kst 1.317933e-03   p_cons 2.431611e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 1.306665e+00	ci left: 1.046616e-06	ci right 4.776718e-06	k: 8	n:3300000
KS ci ratio: 5.939569e-02	ci left: 1.279023e-03	ci right 1.357613e-03	k: 4349	n:3300000
PIK3CA   3300000 perm   5803 sec   (569 perm/sec)   p_kst 1.317879e-03   p_cons 2.424242e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 1.306665e+00	ci left: 1.043454e-06	ci right 4.762287e-06	k: 8	n:3310000
KS ci ratio: 5.935484e-02	ci left: 1.276945e-03	ci right 1.355351e-03	k: 4355	n:3310000
PIK3CA   3310000 perm   5835 sec   (567 perm/sec)   p_kst 1.315710e-03   p_cons 2.416918e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 1.306665e+00	ci left: 1.040311e-06	ci right 4.747943e-06	k: 8	n:3320000
KS ci ratio: 5.921898e-02	ci left: 1.279034e-03	ci right 1.357382e-03	k: 4375	n:3320000
PIK3CA   3320000 perm   5866 sec   (566 perm/sec)   p_kst 1.317771e-03   p_cons 2.409639e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 1.306665e+00	ci left: 1.037187e-06	ci right 4.733685e-06	k: 8	n:3330000
KS ci ratio: 5.907733e-02	ci left: 1.281406e-03	ci right 1.359706e-03	k: 4396	n:3330000
PIK3CA   3330000 perm   5898 sec   (565 perm/sec)   p_kst 1.320120e-03   p_cons 2.402402e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 1.306665e+00	ci left: 1.034082e-06	ci right 4.719512e-06	k: 8	n:3340000
KS ci ratio: 5.896342e-02	ci left: 1.282584e-03	ci right 1.360800e-03	k: 4413	n:3340000
PIK3CA   3340000 perm   5930 sec   (563 perm/sec)   p_kst 1.321257e-03   p_cons 2.395210e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 1.306665e+00	ci left: 1.030995e-06	ci right 4.705424e-06	k: 8	n:3350000
KS ci ratio: 5.887013e-02	ci left: 1.282873e-03	ci right 1.360978e-03	k: 4427	n:3350000
PIK3CA   3350000 perm   5962 sec   (562 perm/sec)   p_kst 1.321493e-03   p_cons 2.388060e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 1.306665e+00	ci left: 1.027927e-06	ci right 4.691420e-06	k: 8	n:3360000
KS ci ratio: 5.883699e-02	ci left: 1.280521e-03	ci right 1.358438e-03	k: 4432	n:3360000
PIK3CA   3360000 perm   5994 sec   (561 perm/sec)   p_kst 1.319048e-03   p_cons 2.380952e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 1.306665e+00	ci left: 1.024877e-06	ci right 4.677499e-06	k: 8	n:3370000
KS ci ratio: 5.873768e-02	ci left: 1.281107e-03	ci right 1.358923e-03	k: 4447	n:3370000
PIK3CA   3370000 perm   6027 sec   (559 perm/sec)   p_kst 1.319585e-03   p_cons 2.373887e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 1.306665e+00	ci left: 1.021844e-06	ci right 4.663660e-06	k: 8	n:3380000
KS ci ratio: 5.862573e-02	ci left: 1.282272e-03	ci right 1.360006e-03	k: 4464	n:3380000
PIK3CA   3380000 perm   6059 sec   (558 perm/sec)   p_kst 1.320710e-03   p_cons 2.366864e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 1.306665e+00	ci left: 1.018830e-06	ci right 4.649903e-06	k: 8	n:3390000
KS ci ratio: 5.854057e-02	ci left: 1.282269e-03	ci right 1.359885e-03	k: 4477	n:3390000
PIK3CA   3390000 perm   6091 sec   (557 perm/sec)   p_kst 1.320649e-03   p_cons 2.359882e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 1.306665e+00	ci left: 1.015834e-06	ci right 4.636227e-06	k: 8	n:3400000
KS ci ratio: 5.846882e-02	ci left: 1.281685e-03	ci right 1.359168e-03	k: 4488	n:3400000
PIK3CA   3400000 perm   6124 sec   (555 perm/sec)   p_kst 1.320000e-03   p_cons 2.352941e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 1.306665e+00	ci left: 1.012855e-06	ci right 4.622631e-06	k: 8	n:3410000
KS ci ratio: 5.839084e-02	ci left: 1.281394e-03	ci right 1.358753e-03	k: 4500	n:3410000
PIK3CA   3410000 perm   6156 sec   (554 perm/sec)   p_kst 1.319648e-03   p_cons 2.346041e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 1.306665e+00	ci left: 1.009893e-06	ci right 4.609114e-06	k: 8	n:3420000
KS ci ratio: 5.830670e-02	ci left: 1.281393e-03	ci right 1.358636e-03	k: 4513	n:3420000
PIK3CA   3420000 perm   6189 sec   (553 perm/sec)   p_kst 1.319591e-03   p_cons 2.339181e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 1.306665e+00	ci left: 1.006949e-06	ci right 4.595677e-06	k: 8	n:3430000
KS ci ratio: 5.819718e-02	ci left: 1.282541e-03	ci right 1.359704e-03	k: 4530	n:3430000
PIK3CA   3430000 perm   6222 sec   (551 perm/sec)   p_kst 1.320700e-03   p_cons 2.332362e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 1.306665e+00	ci left: 1.004021e-06	ci right 4.582317e-06	k: 8	n:3440000
KS ci ratio: 5.813309e-02	ci left: 1.281678e-03	ci right 1.358700e-03	k: 4540	n:3440000
PIK3CA   3440000 perm   6254 sec   (550 perm/sec)   p_kst 1.319767e-03   p_cons 2.325581e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 1.306665e+00	ci left: 1.001111e-06	ci right 4.569035e-06	k: 8	n:3450000
KS ci ratio: 5.801818e-02	ci left: 1.283104e-03	ci right 1.360055e-03	k: 4558	n:3450000
PIK3CA   3450000 perm   6287 sec   (549 perm/sec)   p_kst 1.321159e-03   p_cons 2.318841e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 1.306665e+00	ci left: 9.982179e-07	ci right 4.555830e-06	k: 8	n:3460000
KS ci ratio: 5.792929e-02	ci left: 1.283384e-03	ci right 1.360229e-03	k: 4572	n:3460000
PIK3CA   3460000 perm   6320 sec   (547 perm/sec)   p_kst 1.321387e-03   p_cons 2.312139e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 1.306665e+00	ci left: 9.953412e-07	ci right 4.542701e-06	k: 8	n:3470000
KS ci ratio: 5.783450e-02	ci left: 1.283945e-03	ci right 1.360695e-03	k: 4587	n:3470000
PIK3CA   3470000 perm   6353 sec   (546 perm/sec)   p_kst 1.321902e-03   p_cons 2.305476e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 1.306665e+00	ci left: 9.924810e-07	ci right 4.529647e-06	k: 8	n:3480000
KS ci ratio: 5.775903e-02	ci left: 1.283654e-03	ci right 1.360283e-03	k: 4599	n:3480000
PIK3CA   3480000 perm   6385 sec   (545 perm/sec)   p_kst 1.321552e-03   p_cons 2.298851e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 1.306665e+00	ci left: 9.896372e-07	ci right 4.516668e-06	k: 8	n:3490000
KS ci ratio: 5.770264e-02	ci left: 1.282518e-03	ci right 1.359001e-03	k: 4608	n:3490000
PIK3CA   3490000 perm   6418 sec   (544 perm/sec)   p_kst 1.320344e-03   p_cons 2.292264e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 1.306665e+00	ci left: 9.868097e-07	ci right 4.503763e-06	k: 8	n:3500000
KS ci ratio: 5.765267e-02	ci left: 1.281106e-03	ci right 1.357437e-03	k: 4616	n:3500000
PIK3CA   3500000 perm   6451 sec   (543 perm/sec)   p_kst 1.318857e-03   p_cons 2.285714e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 1.306665e+00	ci left: 9.839983e-07	ci right 4.490932e-06	k: 8	n:3510000
KS ci ratio: 5.751573e-02	ci left: 1.283634e-03	ci right 1.359928e-03	k: 4638	n:3510000
PIK3CA   3510000 perm   6484 sec   (541 perm/sec)   p_kst 1.321368e-03   p_cons 2.279202e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 1.306665e+00	ci left: 9.812028e-07	ci right 4.478174e-06	k: 8	n:3520000
KS ci ratio: 5.740443e-02	ci left: 1.285027e-03	ci right 1.361251e-03	k: 4656	n:3520000
PIK3CA   3520000 perm   6517 sec   (540 perm/sec)   p_kst 1.322727e-03   p_cons 2.272727e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 1.306665e+00	ci left: 9.784232e-07	ci right 4.465488e-06	k: 8	n:3530000
KS ci ratio: 5.734908e-02	ci left: 1.283900e-03	ci right 1.359981e-03	k: 4665	n:3530000
PIK3CA   3530000 perm   6550 sec   (539 perm/sec)   p_kst 1.321530e-03   p_cons 2.266289e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 1.306665e+00	ci left: 9.756593e-07	ci right 4.452873e-06	k: 8	n:3540000
KS ci ratio: 5.725710e-02	ci left: 1.284450e-03	ci right 1.360437e-03	k: 4680	n:3540000
PIK3CA   3540000 perm   6583 sec   (538 perm/sec)   p_kst 1.322034e-03   p_cons 2.259887e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 1.306665e+00	ci left: 9.729110e-07	ci right 4.440330e-06	k: 8	n:3550000
KS ci ratio: 5.716557e-02	ci left: 1.284997e-03	ci right 1.360891e-03	k: 4695	n:3550000
PIK3CA   3550000 perm   6616 sec   (537 perm/sec)   p_kst 1.322535e-03   p_cons 2.253521e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 1.306665e+00	ci left: 9.701781e-07	ci right 4.427857e-06	k: 8	n:3560000
KS ci ratio: 5.706235e-02	ci left: 1.286094e-03	ci right 1.361912e-03	k: 4712	n:3560000
PIK3CA   3560000 perm   6649 sec   (535 perm/sec)   p_kst 1.323596e-03   p_cons 2.247191e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 1.306665e+00	ci left: 9.674605e-07	ci right 4.415454e-06	k: 8	n:3570000
KS ci ratio: 5.697778e-02	ci left: 1.286357e-03	ci right 1.362074e-03	k: 4726	n:3570000
PIK3CA   3570000 perm   6682 sec   (534 perm/sec)   p_kst 1.323810e-03   p_cons 2.240896e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 1.306665e+00	ci left: 9.647581e-07	ci right 4.403121e-06	k: 8	n:3580000
KS ci ratio: 5.687557e-02	ci left: 1.287445e-03	ci right 1.363086e-03	k: 4743	n:3580000
PIK3CA   3580000 perm   6715 sec   (533 perm/sec)   p_kst 1.324860e-03   p_cons 2.234637e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 1.306665e+00	ci left: 9.620707e-07	ci right 4.390856e-06	k: 8	n:3590000
KS ci ratio: 5.675600e-02	ci left: 1.289351e-03	ci right 1.364939e-03	k: 4763	n:3590000
PIK3CA   3590000 perm   6749 sec   (532 perm/sec)   p_kst 1.326741e-03   p_cons 2.228412e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 1.306665e+00	ci left: 9.593983e-07	ci right 4.378659e-06	k: 8	n:3600000
KS ci ratio: 5.667278e-02	ci left: 1.289603e-03	ci right 1.365092e-03	k: 4777	n:3600000
PIK3CA   3600000 perm   6782 sec   (531 perm/sec)   p_kst 1.326944e-03   p_cons 2.222222e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 1.306665e+00	ci left: 9.567407e-07	ci right 4.366530e-06	k: 8	n:3610000
KS ci ratio: 5.657220e-02	ci left: 1.290673e-03	ci right 1.366086e-03	k: 4794	n:3610000
PIK3CA   3610000 perm   6816 sec   (530 perm/sec)   p_kst 1.327978e-03   p_cons 2.216066e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 1.306665e+00	ci left: 9.540978e-07	ci right 4.354467e-06	k: 8	n:3620000
KS ci ratio: 5.647803e-02	ci left: 1.291465e-03	ci right 1.366795e-03	k: 4810	n:3620000
PIK3CA   3620000 perm   6850 sec   (528 perm/sec)   p_kst 1.328729e-03   p_cons 2.209945e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 1.306665e+00	ci left: 9.514694e-07	ci right 4.342472e-06	k: 8	n:3630000
KS ci ratio: 5.640188e-02	ci left: 1.291438e-03	ci right 1.366661e-03	k: 4823	n:3630000
PIK3CA   3630000 perm   6884 sec   (527 perm/sec)   p_kst 1.328650e-03   p_cons 2.203857e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 1.306665e+00	ci left: 9.488555e-07	ci right 4.330542e-06	k: 8	n:3640000
KS ci ratio: 5.635521e-02	ci left: 1.290057e-03	ci right 1.365135e-03	k: 4831	n:3640000
PIK3CA   3640000 perm   6919 sec   (526 perm/sec)   p_kst 1.327198e-03   p_cons 2.197802e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 1.306665e+00	ci left: 9.462559e-07	ci right 4.318677e-06	k: 8	n:3650000
KS ci ratio: 5.625631e-02	ci left: 1.291115e-03	ci right 1.366118e-03	k: 4848	n:3650000
PIK3CA   3650000 perm   6953 sec   (525 perm/sec)   p_kst 1.328219e-03   p_cons 2.191781e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 1.306665e+00	ci left: 9.436705e-07	ci right 4.306878e-06	k: 8	n:3660000
KS ci ratio: 5.620421e-02	ci left: 1.290012e-03	ci right 1.364879e-03	k: 4857	n:3660000
PIK3CA   3660000 perm   6987 sec   (524 perm/sec)   p_kst 1.327049e-03   p_cons 2.185792e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 1.306665e+00	ci left: 9.410991e-07	ci right 4.295142e-06	k: 8	n:3670000
KS ci ratio: 5.612916e-02	ci left: 1.289989e-03	ci right 1.364752e-03	k: 4870	n:3670000
PIK3CA   3670000 perm   7020 sec   (523 perm/sec)   p_kst 1.326975e-03   p_cons 2.179837e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 1.306665e+00	ci left: 9.385418e-07	ci right 4.283471e-06	k: 8	n:3680000
KS ci ratio: 5.604867e-02	ci left: 1.290235e-03	ci right 1.364901e-03	k: 4884	n:3680000
PIK3CA   3680000 perm   7054 sec   (522 perm/sec)   p_kst 1.327174e-03   p_cons 2.173913e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 1.306665e+00	ci left: 9.359983e-07	ci right 4.271863e-06	k: 8	n:3690000
KS ci ratio: 5.599141e-02	ci left: 1.289410e-03	ci right 1.363950e-03	k: 4894	n:3690000
PIK3CA   3690000 perm   7088 sec   (521 perm/sec)   p_kst 1.326287e-03   p_cons 2.168022e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 1.306665e+00	ci left: 9.334686e-07	ci right 4.260317e-06	k: 8	n:3700000
KS ci ratio: 5.593433e-02	ci left: 1.288590e-03	ci right 1.363005e-03	k: 4904	n:3700000
PIK3CA   3700000 perm   7122 sec   (520 perm/sec)   p_kst 1.325405e-03   p_cons 2.162162e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 1.306665e+00	ci left: 9.309525e-07	ci right 4.248834e-06	k: 8	n:3710000
KS ci ratio: 5.587173e-02	ci left: 1.288040e-03	ci right 1.362337e-03	k: 4915	n:3710000
PIK3CA   3710000 perm   7156 sec   (518 perm/sec)   p_kst 1.324798e-03   p_cons 2.156334e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 1.306665e+00	ci left: 9.284500e-07	ci right 4.237412e-06	k: 8	n:3720000
KS ci ratio: 5.582069e-02	ci left: 1.286963e-03	ci right 1.361128e-03	k: 4924	n:3720000
PIK3CA   3720000 perm   7192 sec   (517 perm/sec)   p_kst 1.323656e-03   p_cons 2.150538e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 1.306665e+00	ci left: 9.259608e-07	ci right 4.226052e-06	k: 8	n:3730000
KS ci ratio: 5.575282e-02	ci left: 1.286685e-03	ci right 1.360741e-03	k: 4936	n:3730000
PIK3CA   3730000 perm   7229 sec   (516 perm/sec)   p_kst 1.323324e-03   p_cons 2.144772e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 1.306665e+00	ci left: 9.234850e-07	ci right 4.214752e-06	k: 8	n:3740000
KS ci ratio: 5.568520e-02	ci left: 1.286409e-03	ci right 1.360356e-03	k: 4948	n:3740000
PIK3CA   3740000 perm   7264 sec   (515 perm/sec)   p_kst 1.322995e-03   p_cons 2.139037e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 1.306665e+00	ci left: 9.210223e-07	ci right 4.203513e-06	k: 8	n:3750000
KS ci ratio: 5.560659e-02	ci left: 1.286660e-03	ci right 1.360514e-03	k: 4962	n:3750000
PIK3CA   3750000 perm   7300 sec   (514 perm/sec)   p_kst 1.323200e-03   p_cons 2.133333e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 1.306665e+00	ci left: 9.185728e-07	ci right 4.192333e-06	k: 8	n:3760000
KS ci ratio: 5.554509e-02	ci left: 1.286123e-03	ci right 1.359861e-03	k: 4973	n:3760000
PIK3CA   3760000 perm   7335 sec   (513 perm/sec)   p_kst 1.322606e-03   p_cons 2.127660e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 1.306665e+00	ci left: 9.161363e-07	ci right 4.181213e-06	k: 8	n:3770000
KS ci ratio: 5.547822e-02	ci left: 1.285850e-03	ci right 1.359482e-03	k: 4985	n:3770000
PIK3CA   3770000 perm   7371 sec   (511 perm/sec)   p_kst 1.322281e-03   p_cons 2.122016e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 1.306665e+00	ci left: 9.137126e-07	ci right 4.170152e-06	k: 8	n:3780000
KS ci ratio: 5.539494e-02	ci left: 1.286362e-03	ci right 1.359908e-03	k: 5000	n:3780000
PIK3CA   3780000 perm   7407 sec   (510 perm/sec)   p_kst 1.322751e-03   p_cons 2.116402e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 1.306665e+00	ci left: 9.113018e-07	ci right 4.159149e-06	k: 8	n:3790000
KS ci ratio: 5.532308e-02	ci left: 1.286350e-03	ci right 1.359798e-03	k: 5013	n:3790000
PIK3CA   3790000 perm   7444 sec   (509 perm/sec)   p_kst 1.322691e-03   p_cons 2.110818e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 1.306665e+00	ci left: 9.089036e-07	ci right 4.148203e-06	k: 8	n:3800000
KS ci ratio: 5.522951e-02	ci left: 1.287377e-03	ci right 1.360755e-03	k: 5030	n:3800000
PIK3CA   3800000 perm   7479 sec   (508 perm/sec)   p_kst 1.323684e-03   p_cons 2.105263e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 1.306665e+00	ci left: 9.065181e-07	ci right 4.137316e-06	k: 8	n:3810000
KS ci ratio: 5.517472e-02	ci left: 1.286586e-03	ci right 1.359844e-03	k: 5040	n:3810000
PIK3CA   3810000 perm   7515 sec   (507 perm/sec)   p_kst 1.322835e-03   p_cons 2.099738e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 1.306665e+00	ci left: 9.041450e-07	ci right 4.126485e-06	k: 8	n:3820000
KS ci ratio: 5.506555e-02	ci left: 1.288382e-03	ci right 1.361592e-03	k: 5060	n:3820000
PIK3CA   3820000 perm   7551 sec   (506 perm/sec)   p_kst 1.324607e-03   p_cons 2.094241e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 1.306665e+00	ci left: 9.017843e-07	ci right 4.115711e-06	k: 8	n:3830000
KS ci ratio: 5.501125e-02	ci left: 1.287593e-03	ci right 1.360684e-03	k: 5070	n:3830000
PIK3CA   3830000 perm   7586 sec   (505 perm/sec)   p_kst 1.323760e-03   p_cons 2.088773e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 1.306665e+00	ci left: 8.994359e-07	ci right 4.104993e-06	k: 8	n:3840000
KS ci ratio: 5.495170e-02	ci left: 1.287065e-03	ci right 1.360044e-03	k: 5081	n:3840000
PIK3CA   3840000 perm   7623 sec   (504 perm/sec)   p_kst 1.323177e-03   p_cons 2.083333e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 1.306665e+00	ci left: 8.970997e-07	ci right 4.094331e-06	k: 8	n:3850000
KS ci ratio: 5.489773e-02	ci left: 1.286284e-03	ci right 1.359145e-03	k: 5091	n:3850000
PIK3CA   3850000 perm   7658 sec   (503 perm/sec)   p_kst 1.322338e-03   p_cons 2.077922e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 1.306665e+00	ci left: 8.947756e-07	ci right 4.083724e-06	k: 8	n:3860000
KS ci ratio: 5.479556e-02	ci left: 1.287806e-03	ci right 1.360614e-03	k: 5110	n:3860000
PIK3CA   3860000 perm   7694 sec   (502 perm/sec)   p_kst 1.323834e-03   p_cons 2.072539e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 1.306665e+00	ci left: 8.924635e-07	ci right 4.073171e-06	k: 8	n:3870000
KS ci ratio: 5.470463e-02	ci left: 1.288811e-03	ci right 1.361551e-03	k: 5127	n:3870000
PIK3CA   3870000 perm   7730 sec   (501 perm/sec)   p_kst 1.324806e-03   p_cons 2.067183e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 1.306665e+00	ci left: 8.901633e-07	ci right 4.062674e-06	k: 8	n:3880000
KS ci ratio: 5.466737e-02	ci left: 1.287269e-03	ci right 1.359870e-03	k: 5134	n:3880000
PIK3CA   3880000 perm   7766 sec   (500 perm/sec)   p_kst 1.323196e-03   p_cons 2.061856e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 1.239611e+00	ci left: 1.057937e-06	ci right 4.391976e-06	k: 9	n:3890000
KS ci ratio: 5.458238e-02	ci left: 1.288017e-03	ci right 1.360544e-03	k: 5150	n:3890000
PIK3CA   3890000 perm   7803 sec   (499 perm/sec)   p_kst 1.323907e-03   p_cons 2.313625e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 1.239611e+00	ci left: 1.055224e-06	ci right 4.380714e-06	k: 9	n:3900000
KS ci ratio: 5.449779e-02	ci left: 1.288761e-03	ci right 1.361214e-03	k: 5166	n:3900000
PIK3CA   3900000 perm   7840 sec   (497 perm/sec)   p_kst 1.324615e-03   p_cons 2.307692e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 1.239611e+00	ci left: 1.052526e-06	ci right 4.369510e-06	k: 9	n:3910000
KS ci ratio: 5.441359e-02	ci left: 1.289501e-03	ci right 1.361880e-03	k: 5182	n:3910000
PIK3CA   3910000 perm   7877 sec   (496 perm/sec)   p_kst 1.325320e-03   p_cons 2.301790e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 1.239611e+00	ci left: 1.049841e-06	ci right 4.358364e-06	k: 9	n:3920000
KS ci ratio: 5.438217e-02	ci left: 1.287721e-03	ci right 1.359957e-03	k: 5188	n:3920000
PIK3CA   3920000 perm   7914 sec   (495 perm/sec)   p_kst 1.323469e-03   p_cons 2.295918e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 1.239611e+00	ci left: 1.047169e-06	ci right 4.347274e-06	k: 9	n:3930000
KS ci ratio: 5.432464e-02	ci left: 1.287206e-03	ci right 1.359334e-03	k: 5199	n:3930000
PIK3CA   3930000 perm   7951 sec   (494 perm/sec)   p_kst 1.322901e-03   p_cons 2.290076e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 1.239611e+00	ci left: 1.044511e-06	ci right 4.336240e-06	k: 9	n:3940000
KS ci ratio: 5.426728e-02	ci left: 1.286693e-03	ci right 1.358714e-03	k: 5210	n:3940000
PIK3CA   3940000 perm   7987 sec   (493 perm/sec)   p_kst 1.322335e-03   p_cons 2.284264e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 1.239611e+00	ci left: 1.041867e-06	ci right 4.325262e-06	k: 9	n:3950000
KS ci ratio: 5.418414e-02	ci left: 1.287431e-03	ci right 1.359379e-03	k: 5226	n:3950000
PIK3CA   3950000 perm   8024 sec   (492 perm/sec)   p_kst 1.323038e-03   p_cons 2.278481e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 1.239611e+00	ci left: 1.039236e-06	ci right 4.314340e-06	k: 9	n:3960000
KS ci ratio: 5.412724e-02	ci left: 1.286920e-03	ci right 1.358762e-03	k: 5237	n:3960000
PIK3CA   3960000 perm   8062 sec   (491 perm/sec)   p_kst 1.322475e-03   p_cons 2.272727e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 1.239611e+00	ci left: 1.036618e-06	ci right 4.303473e-06	k: 9	n:3970000
KS ci ratio: 5.407051e-02	ci left: 1.286412e-03	ci right 1.358148e-03	k: 5248	n:3970000
PIK3CA   3970000 perm   8099 sec   (490 perm/sec)   p_kst 1.321914e-03   p_cons 2.267003e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 1.239611e+00	ci left: 1.034014e-06	ci right 4.292660e-06	k: 9	n:3980000
KS ci ratio: 5.402938e-02	ci left: 1.285162e-03	ci right 1.356772e-03	k: 5256	n:3980000
PIK3CA   3980000 perm   8137 sec   (489 perm/sec)   p_kst 1.320603e-03   p_cons 2.261307e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 1.239611e+00	ci left: 1.031422e-06	ci right 4.281901e-06	k: 9	n:3990000
KS ci ratio: 5.395758e-02	ci left: 1.285403e-03	ci right 1.356928e-03	k: 5270	n:3990000
PIK3CA   3990000 perm   8174 sec   (488 perm/sec)   p_kst 1.320802e-03   p_cons 2.255639e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 1.239611e+00	ci left: 1.028844e-06	ci right 4.271197e-06	k: 9	n:4000000
KS ci ratio: 5.391671e-02	ci left: 1.284162e-03	ci right 1.355563e-03	k: 5278	n:4000000
PIK3CA   4000000 perm   8210 sec   (487 perm/sec)   p_kst 1.319500e-03   p_cons 2.250000e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 1.239611e+00	ci left: 1.026278e-06	ci right 4.260545e-06	k: 9	n:4010000
KS ci ratio: 5.385555e-02	ci left: 1.283912e-03	ci right 1.355215e-03	k: 5290	n:4010000
PIK3CA   4010000 perm   8248 sec   (486 perm/sec)   p_kst 1.319202e-03   p_cons 2.244389e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 1.239611e+00	ci left: 1.023725e-06	ci right 4.249947e-06	k: 9	n:4020000
KS ci ratio: 5.376921e-02	ci left: 1.284890e-03	ci right 1.356130e-03	k: 5307	n:4020000
PIK3CA   4020000 perm   8285 sec   (485 perm/sec)   p_kst 1.320149e-03   p_cons 2.238806e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 1.239611e+00	ci left: 1.021185e-06	ci right 4.239401e-06	k: 9	n:4030000
KS ci ratio: 5.370349e-02	ci left: 1.284884e-03	ci right 1.356034e-03	k: 5320	n:4030000
PIK3CA   4030000 perm   8323 sec   (484 perm/sec)   p_kst 1.320099e-03   p_cons 2.233251e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 1.239611e+00	ci left: 1.018657e-06	ci right 4.228908e-06	k: 9	n:4040000
KS ci ratio: 5.366320e-02	ci left: 1.283657e-03	ci right 1.354684e-03	k: 5328	n:4040000
PIK3CA   4040000 perm   8360 sec   (483 perm/sec)   p_kst 1.318812e-03   p_cons 2.227723e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 1.239611e+00	ci left: 1.016142e-06	ci right 4.218466e-06	k: 9	n:4050000
KS ci ratio: 5.356775e-02	ci left: 1.285116e-03	ci right 1.356093e-03	k: 5347	n:4050000
PIK3CA   4050000 perm   8398 sec   (482 perm/sec)   p_kst 1.320247e-03   p_cons 2.222222e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 1.239611e+00	ci left: 1.013639e-06	ci right 4.208075e-06	k: 9	n:4060000
KS ci ratio: 5.350776e-02	ci left: 1.284867e-03	ci right 1.355749e-03	k: 5359	n:4060000
PIK3CA   4060000 perm   8436 sec   (481 perm/sec)   p_kst 1.319951e-03   p_cons 2.216749e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 1.239611e+00	ci left: 1.011149e-06	ci right 4.197736e-06	k: 9	n:4070000
KS ci ratio: 5.345295e-02	ci left: 1.284377e-03	ci right 1.355156e-03	k: 5370	n:4070000
PIK3CA   4070000 perm   8475 sec   (480 perm/sec)   p_kst 1.319410e-03   p_cons 2.211302e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 1.239611e+00	ci left: 1.008670e-06	ci right 4.187448e-06	k: 9	n:4080000
KS ci ratio: 5.341819e-02	ci left: 1.282922e-03	ci right 1.353573e-03	k: 5377	n:4080000
PIK3CA   4080000 perm   8513 sec   (479 perm/sec)   p_kst 1.317892e-03   p_cons 2.205882e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 1.239611e+00	ci left: 1.006204e-06	ci right 4.177209e-06	k: 9	n:4090000
KS ci ratio: 5.333394e-02	ci left: 1.283886e-03	ci right 1.354476e-03	k: 5394	n:4090000
PIK3CA   4090000 perm   8551 sec   (478 perm/sec)   p_kst 1.318826e-03   p_cons 2.200489e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 1.239611e+00	ci left: 1.003750e-06	ci right 4.167021e-06	k: 9	n:4100000
KS ci ratio: 5.327967e-02	ci left: 1.283402e-03	ci right 1.353891e-03	k: 5405	n:4100000
PIK3CA   4100000 perm   8589 sec   (477 perm/sec)   p_kst 1.318293e-03   p_cons 2.195122e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 1.239611e+00	ci left: 1.001308e-06	ci right 4.156882e-06	k: 9	n:4110000
KS ci ratio: 5.318134e-02	ci left: 1.285080e-03	ci right 1.355528e-03	k: 5425	n:4110000
PIK3CA   4110000 perm   8628 sec   (476 perm/sec)   p_kst 1.319951e-03   p_cons 2.189781e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 1.239611e+00	ci left: 9.988774e-07	ci right 4.146793e-06	k: 9	n:4120000
KS ci ratio: 5.310797e-02	ci left: 1.285554e-03	ci right 1.355927e-03	k: 5440	n:4120000
PIK3CA   4120000 perm   8666 sec   (475 perm/sec)   p_kst 1.320388e-03   p_cons 2.184466e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 1.239611e+00	ci left: 9.964588e-07	ci right 4.136752e-06	k: 9	n:4130000
KS ci ratio: 5.305438e-02	ci left: 1.285069e-03	ci right 1.355343e-03	k: 5451	n:4130000
PIK3CA   4130000 perm   8705 sec   (474 perm/sec)   p_kst 1.319855e-03   p_cons 2.179177e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 1.239611e+00	ci left: 9.940519e-07	ci right 4.126760e-06	k: 9	n:4140000
KS ci ratio: 5.300095e-02	ci left: 1.284587e-03	ci right 1.354761e-03	k: 5462	n:4140000
PIK3CA   4140000 perm   8744 sec   (473 perm/sec)   p_kst 1.319324e-03   p_cons 2.173913e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 1.239611e+00	ci left: 9.916566e-07	ci right 4.116816e-06	k: 9	n:4150000
KS ci ratio: 5.291866e-02	ci left: 1.285534e-03	ci right 1.355647e-03	k: 5479	n:4150000
PIK3CA   4150000 perm   8783 sec   (473 perm/sec)   p_kst 1.320241e-03   p_cons 2.168675e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 1.239611e+00	ci left: 9.892728e-07	ci right 4.106920e-06	k: 9	n:4160000
KS ci ratio: 5.284155e-02	ci left: 1.286239e-03	ci right 1.356285e-03	k: 5495	n:4160000
PIK3CA   4160000 perm   8824 sec   (471 perm/sec)   p_kst 1.320913e-03   p_cons 2.163462e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 1.239611e+00	ci left: 9.869005e-07	ci right 4.097071e-06	k: 9	n:4170000
KS ci ratio: 5.275520e-02	ci left: 1.287414e-03	ci right 1.357406e-03	k: 5513	n:4170000
PIK3CA   4170000 perm   8863 sec   (471 perm/sec)   p_kst 1.322062e-03   p_cons 2.158273e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 1.239611e+00	ci left: 9.845395e-07	ci right 4.087270e-06	k: 9	n:4180000
KS ci ratio: 5.268835e-02	ci left: 1.287639e-03	ci right 1.357552e-03	k: 5527	n:4180000
PIK3CA   4180000 perm   8901 sec   (470 perm/sec)   p_kst 1.322249e-03   p_cons 2.153110e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 1.239611e+00	ci left: 9.821897e-07	ci right 4.077515e-06	k: 9	n:4190000
KS ci ratio: 5.263602e-02	ci left: 1.287157e-03	ci right 1.356972e-03	k: 5538	n:4190000
PIK3CA   4190000 perm   8942 sec   (469 perm/sec)   p_kst 1.321718e-03   p_cons 2.147971e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 1.239611e+00	ci left: 9.798512e-07	ci right 4.067806e-06	k: 9	n:4200000
KS ci ratio: 5.257911e-02	ci left: 1.286911e-03	ci right 1.356636e-03	k: 5550	n:4200000
PIK3CA   4200000 perm   8981 sec   (468 perm/sec)   p_kst 1.321429e-03   p_cons 2.142857e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 1.239611e+00	ci left: 9.775238e-07	ci right 4.058144e-06	k: 9	n:4210000
KS ci ratio: 5.250348e-02	ci left: 1.287605e-03	ci right 1.357264e-03	k: 5566	n:4210000
PIK3CA   4210000 perm   9021 sec   (467 perm/sec)   p_kst 1.322090e-03   p_cons 2.137767e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 1.239611e+00	ci left: 9.752073e-07	ci right 4.048528e-06	k: 9	n:4220000
KS ci ratio: 5.242817e-02	ci left: 1.288296e-03	ci right 1.357889e-03	k: 5582	n:4220000
PIK3CA   4220000 perm   9060 sec   (466 perm/sec)   p_kst 1.322749e-03   p_cons 2.132701e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 1.239611e+00	ci left: 9.729019e-07	ci right 4.038957e-06	k: 9	n:4230000
KS ci ratio: 5.236724e-02	ci left: 1.288283e-03	ci right 1.357792e-03	k: 5595	n:4230000
PIK3CA   4230000 perm   9101 sec   (465 perm/sec)   p_kst 1.322695e-03   p_cons 2.127660e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 1.239611e+00	ci left: 9.706073e-07	ci right 4.029431e-06	k: 9	n:4240000
KS ci ratio: 5.229719e-02	ci left: 1.288736e-03	ci right 1.358174e-03	k: 5610	n:4240000
PIK3CA   4240000 perm   9140 sec   (464 perm/sec)   p_kst 1.323113e-03   p_cons 2.122642e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 1.239611e+00	ci left: 9.683235e-07	ci right 4.019950e-06	k: 9	n:4250000
KS ci ratio: 5.222277e-02	ci left: 1.289419e-03	ci right 1.358792e-03	k: 5626	n:4250000
PIK3CA   4250000 perm   9182 sec   (463 perm/sec)   p_kst 1.323765e-03   p_cons 2.117647e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 1.239611e+00	ci left: 9.660505e-07	ci right 4.010513e-06	k: 9	n:4260000
KS ci ratio: 5.215329e-02	ci left: 1.289868e-03	ci right 1.359170e-03	k: 5641	n:4260000
PIK3CA   4260000 perm   9223 sec   (462 perm/sec)   p_kst 1.324178e-03   p_cons 2.112676e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 1.239611e+00	ci left: 9.637880e-07	ci right 4.001121e-06	k: 9	n:4270000
KS ci ratio: 5.210254e-02	ci left: 1.289390e-03	ci right 1.358596e-03	k: 5652	n:4270000
PIK3CA   4270000 perm   9262 sec   (461 perm/sec)   p_kst 1.323653e-03   p_cons 2.107728e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 1.239611e+00	ci left: 9.615362e-07	ci right 3.991773e-06	k: 9	n:4280000
KS ci ratio: 5.205193e-02	ci left: 1.288914e-03	ci right 1.358026e-03	k: 5663	n:4280000
PIK3CA   4280000 perm   9302 sec   (460 perm/sec)   p_kst 1.323131e-03   p_cons 2.102804e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 1.239611e+00	ci left: 9.592949e-07	ci right 3.982468e-06	k: 9	n:4290000
KS ci ratio: 5.201983e-02	ci left: 1.287520e-03	ci right 1.356513e-03	k: 5670	n:4290000
PIK3CA   4290000 perm   9344 sec   (459 perm/sec)   p_kst 1.321678e-03   p_cons 2.097902e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 1.239611e+00	ci left: 9.570639e-07	ci right 3.973206e-06	k: 9	n:4300000
KS ci ratio: 5.193744e-02	ci left: 1.288657e-03	ci right 1.357599e-03	k: 5688	n:4300000
PIK3CA   4300000 perm   9383 sec   (458 perm/sec)   p_kst 1.322791e-03   p_cons 2.093023e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 1.239611e+00	ci left: 9.548434e-07	ci right 3.963988e-06	k: 9	n:4310000
KS ci ratio: 5.187365e-02	ci left: 1.288873e-03	ci right 1.357739e-03	k: 5702	n:4310000
PIK3CA   4310000 perm   9424 sec   (457 perm/sec)   p_kst 1.322970e-03   p_cons 2.088167e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 1.239611e+00	ci left: 9.526331e-07	ci right 3.954812e-06	k: 9	n:4320000
KS ci ratio: 5.182825e-02	ci left: 1.288175e-03	ci right 1.356941e-03	k: 5712	n:4320000
PIK3CA   4320000 perm   9465 sec   (456 perm/sec)   p_kst 1.322222e-03   p_cons 2.083333e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 1.181923e+00	ci left: 1.107481e-06	ci right 4.247191e-06	k: 10	n:4330000
KS ci ratio: 5.178750e-02	ci left: 1.287251e-03	ci right 1.355913e-03	k: 5721	n:4330000
PIK3CA   4330000 perm   9506 sec   (455 perm/sec)   p_kst 1.321247e-03   p_cons 2.309469e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 1.181923e+00	ci left: 1.104929e-06	ci right 4.237405e-06	k: 10	n:4340000
KS ci ratio: 5.172426e-02	ci left: 1.287469e-03	ci right 1.356056e-03	k: 5735	n:4340000
PIK3CA   4340000 perm   9548 sec   (455 perm/sec)   p_kst 1.321429e-03   p_cons 2.304147e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 1.181923e+00	ci left: 1.102389e-06	ci right 4.227664e-06	k: 10	n:4350000
KS ci ratio: 5.164326e-02	ci left: 1.288594e-03	ci right 1.357130e-03	k: 5753	n:4350000
PIK3CA   4350000 perm   9589 sec   (454 perm/sec)   p_kst 1.322529e-03   p_cons 2.298851e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 1.181923e+00	ci left: 1.099860e-06	ci right 4.217968e-06	k: 10	n:4360000
KS ci ratio: 5.161640e-02	ci left: 1.286997e-03	ci right 1.355411e-03	k: 5759	n:4360000
PIK3CA   4360000 perm   9631 sec   (453 perm/sec)   p_kst 1.320872e-03   p_cons 2.293578e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 1.181923e+00	ci left: 1.097343e-06	ci right 4.208315e-06	k: 10	n:4370000
KS ci ratio: 5.154931e-02	ci left: 1.287440e-03	ci right 1.355786e-03	k: 5774	n:4370000
PIK3CA   4370000 perm   9672 sec   (452 perm/sec)   p_kst 1.321281e-03   p_cons 2.288330e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 1.181923e+00	ci left: 1.094838e-06	ci right 4.198707e-06	k: 10	n:4380000
KS ci ratio: 5.148248e-02	ci left: 1.287881e-03	ci right 1.356160e-03	k: 5789	n:4380000
PIK3CA   4380000 perm   9713 sec   (451 perm/sec)   p_kst 1.321689e-03   p_cons 2.283105e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 1.181923e+00	ci left: 1.092344e-06	ci right 4.189143e-06	k: 10	n:4390000
KS ci ratio: 5.142479e-02	ci left: 1.287871e-03	ci right 1.356070e-03	k: 5802	n:4390000
PIK3CA   4390000 perm   9757 sec   (450 perm/sec)   p_kst 1.321640e-03   p_cons 2.277904e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 1.181923e+00	ci left: 1.089862e-06	ci right 4.179622e-06	k: 10	n:4400000
KS ci ratio: 5.137171e-02	ci left: 1.287636e-03	ci right 1.355750e-03	k: 5814	n:4400000
PIK3CA   4400000 perm   9798 sec   (449 perm/sec)   p_kst 1.321364e-03   p_cons 2.272727e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 1.181923e+00	ci left: 1.087390e-06	ci right 4.170145e-06	k: 10	n:4410000
KS ci ratio: 5.131879e-02	ci left: 1.287402e-03	ci right 1.355432e-03	k: 5826	n:4410000
PIK3CA   4410000 perm   9842 sec   (448 perm/sec)   p_kst 1.321088e-03   p_cons 2.267574e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 1.181923e+00	ci left: 1.084930e-06	ci right 4.160710e-06	k: 10	n:4420000
KS ci ratio: 5.129243e-02	ci left: 1.285830e-03	ci right 1.353740e-03	k: 5832	n:4420000
PIK3CA   4420000 perm   9885 sec   (447 perm/sec)   p_kst 1.319457e-03   p_cons 2.262443e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 1.181923e+00	ci left: 1.082481e-06	ci right 4.151318e-06	k: 10	n:4430000
KS ci ratio: 5.121783e-02	ci left: 1.286715e-03	ci right 1.354571e-03	k: 5849	n:4430000
PIK3CA   4430000 perm   9926 sec   (446 perm/sec)   p_kst 1.320316e-03   p_cons 2.257336e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 1.181923e+00	ci left: 1.080043e-06	ci right 4.141968e-06	k: 10	n:4440000
KS ci ratio: 5.115665e-02	ci left: 1.286930e-03	ci right 1.354714e-03	k: 5863	n:4440000
PIK3CA   4440000 perm   9968 sec   (445 perm/sec)   p_kst 1.320495e-03   p_cons 2.252252e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 1.181923e+00	ci left: 1.077616e-06	ci right 4.132660e-06	k: 10	n:4450000
KS ci ratio: 5.110874e-02	ci left: 1.286478e-03	ci right 1.354173e-03	k: 5874	n:4450000
PIK3CA   4450000 perm   10012 sec   (444 perm/sec)   p_kst 1.320000e-03   p_cons 2.247191e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 1.181923e+00	ci left: 1.075200e-06	ci right 4.123394e-06	k: 10	n:4460000
KS ci ratio: 5.106098e-02	ci left: 1.286029e-03	ci right 1.353635e-03	k: 5885	n:4460000
PIK3CA   4460000 perm   10055 sec   (444 perm/sec)   p_kst 1.319507e-03   p_cons 2.242152e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 1.181923e+00	ci left: 1.072794e-06	ci right 4.114170e-06	k: 10	n:4470000
KS ci ratio: 5.099603e-02	ci left: 1.286465e-03	ci right 1.354005e-03	k: 5900	n:4470000
PIK3CA   4470000 perm   10097 sec   (443 perm/sec)   p_kst 1.319911e-03   p_cons 2.237136e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 1.181923e+00	ci left: 1.070400e-06	ci right 4.104986e-06	k: 10	n:4480000
KS ci ratio: 5.093995e-02	ci left: 1.286458e-03	ci right 1.353921e-03	k: 5913	n:4480000
PIK3CA   4480000 perm   10141 sec   (442 perm/sec)   p_kst 1.319866e-03   p_cons 2.232143e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 1.131605e+00	ci left: 1.222976e-06	ci right 4.383523e-06	k: 11	n:4490000
KS ci ratio: 5.086687e-02	ci left: 1.287331e-03	ci right 1.354740e-03	k: 5930	n:4490000
PIK3CA   4490000 perm   10182 sec   (441 perm/sec)   p_kst 1.320713e-03   p_cons 2.449889e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 1.131605e+00	ci left: 1.220258e-06	ci right 4.373782e-06	k: 11	n:4500000
KS ci ratio: 5.081978e-02	ci left: 1.286883e-03	ci right 1.354205e-03	k: 5941	n:4500000
PIK3CA   4500000 perm   10229 sec   (440 perm/sec)   p_kst 1.320222e-03   p_cons 2.444444e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 1.131605e+00	ci left: 1.217553e-06	ci right 4.364084e-06	k: 11	n:4510000
KS ci ratio: 5.073017e-02	ci left: 1.288627e-03	ci right 1.355918e-03	k: 5962	n:4510000
PIK3CA   4510000 perm   10271 sec   (439 perm/sec)   p_kst 1.321951e-03   p_cons 2.439024e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 1.131605e+00	ci left: 1.214859e-06	ci right 4.354429e-06	k: 11	n:4520000
KS ci ratio: 5.066223e-02	ci left: 1.289271e-03	ci right 1.356503e-03	k: 5978	n:4520000
PIK3CA   4520000 perm   10315 sec   (438 perm/sec)   p_kst 1.322566e-03   p_cons 2.433628e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 1.131605e+00	ci left: 1.212177e-06	ci right 4.344817e-06	k: 11	n:4530000
KS ci ratio: 5.060302e-02	ci left: 1.289477e-03	ci right 1.356638e-03	k: 5992	n:4530000
PIK3CA   4530000 perm   10359 sec   (437 perm/sec)   p_kst 1.322737e-03   p_cons 2.428256e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 1.131605e+00	ci left: 1.209507e-06	ci right 4.335247e-06	k: 11	n:4540000
KS ci ratio: 5.053980e-02	ci left: 1.289899e-03	ci right 1.356996e-03	k: 6007	n:4540000
PIK3CA   4540000 perm   10401 sec   (436 perm/sec)   p_kst 1.323128e-03   p_cons 2.422907e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 1.131605e+00	ci left: 1.206849e-06	ci right 4.325719e-06	k: 11	n:4550000
KS ci ratio: 5.049781e-02	ci left: 1.289234e-03	ci right 1.356239e-03	k: 6017	n:4550000
PIK3CA   4550000 perm   10444 sec   (436 perm/sec)   p_kst 1.322418e-03   p_cons 2.417582e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 1.131605e+00	ci left: 1.204202e-06	ci right 4.316232e-06	k: 11	n:4560000
KS ci ratio: 5.043080e-02	ci left: 1.289871e-03	ci right 1.356818e-03	k: 6033	n:4560000
PIK3CA   4560000 perm   10487 sec   (435 perm/sec)   p_kst 1.323026e-03   p_cons 2.412281e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 1.131605e+00	ci left: 1.201567e-06	ci right 4.306788e-06	k: 11	n:4570000
KS ci ratio: 5.036822e-02	ci left: 1.290289e-03	ci right 1.357172e-03	k: 6048	n:4570000
PIK3CA   4570000 perm   10529 sec   (434 perm/sec)   p_kst 1.323414e-03   p_cons 2.407002e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 1.131605e+00	ci left: 1.198944e-06	ci right 4.297384e-06	k: 11	n:4580000
KS ci ratio: 5.031419e-02	ci left: 1.290275e-03	ci right 1.357083e-03	k: 6061	n:4580000
PIK3CA   4580000 perm   10573 sec   (433 perm/sec)   p_kst 1.323362e-03   p_cons 2.401747e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 1.131605e+00	ci left: 1.196332e-06	ci right 4.288022e-06	k: 11	n:4590000
KS ci ratio: 5.027690e-02	ci left: 1.289400e-03	ci right 1.356112e-03	k: 6070	n:4590000
PIK3CA   4590000 perm   10619 sec   (432 perm/sec)   p_kst 1.322440e-03   p_cons 2.396514e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 1.131605e+00	ci left: 1.193731e-06	ci right 4.278700e-06	k: 11	n:4600000
KS ci ratio: 5.022316e-02	ci left: 1.289387e-03	ci right 1.356025e-03	k: 6083	n:4600000
PIK3CA   4600000 perm   10662 sec   (431 perm/sec)   p_kst 1.322391e-03   p_cons 2.391304e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 1.131605e+00	ci left: 1.191142e-06	ci right 4.269419e-06	k: 11	n:4610000
KS ci ratio: 5.017371e-02	ci left: 1.289161e-03	ci right 1.355720e-03	k: 6095	n:4610000
PIK3CA   4610000 perm   10705 sec   (431 perm/sec)   p_kst 1.322126e-03   p_cons 2.386117e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 1.131605e+00	ci left: 1.188563e-06	ci right 4.260177e-06	k: 11	n:4620000
KS ci ratio: 5.012851e-02	ci left: 1.288722e-03	ci right 1.355196e-03	k: 6106	n:4620000
PIK3CA   4620000 perm   10750 sec   (430 perm/sec)   p_kst 1.321645e-03   p_cons 2.380952e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 1.131605e+00	ci left: 1.185996e-06	ci right 4.250976e-06	k: 11	n:4630000
KS ci ratio: 5.009164e-02	ci left: 1.287858e-03	ci right 1.354237e-03	k: 6115	n:4630000
PIK3CA   4630000 perm   10792 sec   (429 perm/sec)   p_kst 1.320734e-03   p_cons 2.375810e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 1.131605e+00	ci left: 1.183440e-06	ci right 4.241815e-06	k: 11	n:4640000
KS ci ratio: 5.003032e-02	ci left: 1.288274e-03	ci right 1.354592e-03	k: 6130	n:4640000
PIK3CA   4640000 perm   10835 sec   (428 perm/sec)   p_kst 1.321121e-03   p_cons 2.370690e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 1.131605e+00	ci left: 1.180895e-06	ci right 4.232693e-06	k: 11	n:4650000
KS ci ratio: 4.996922e-02	ci left: 1.288689e-03	ci right 1.354945e-03	k: 6145	n:4650000
PIK3CA   4650000 perm   10879 sec   (427 perm/sec)   p_kst 1.321505e-03   p_cons 2.365591e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 1.131605e+00	ci left: 1.178361e-06	ci right 4.223609e-06	k: 11	n:4660000
KS ci ratio: 4.989618e-02	ci left: 1.289738e-03	ci right 1.355948e-03	k: 6163	n:4660000
PIK3CA   4660000 perm   10922 sec   (427 perm/sec)   p_kst 1.322532e-03   p_cons 2.360515e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 1.131605e+00	ci left: 1.175838e-06	ci right 4.214565e-06	k: 11	n:4670000
KS ci ratio: 4.985981e-02	ci left: 1.288880e-03	ci right 1.354996e-03	k: 6172	n:4670000
PIK3CA   4670000 perm   10968 sec   (426 perm/sec)   p_kst 1.321627e-03   p_cons 2.355460e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 1.131605e+00	ci left: 1.173325e-06	ci right 4.205560e-06	k: 11	n:4680000
KS ci ratio: 4.979531e-02	ci left: 1.289502e-03	ci right 1.355562e-03	k: 6188	n:4680000
PIK3CA   4680000 perm   11011 sec   (425 perm/sec)   p_kst 1.322222e-03   p_cons 2.350427e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 1.131605e+00	ci left: 1.170824e-06	ci right 4.196593e-06	k: 11	n:4690000
KS ci ratio: 4.974711e-02	ci left: 1.289279e-03	ci right 1.355262e-03	k: 6200	n:4690000
PIK3CA   4690000 perm   11054 sec   (424 perm/sec)   p_kst 1.321962e-03   p_cons 2.345416e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 1.131605e+00	ci left: 1.168333e-06	ci right 4.187664e-06	k: 11	n:4700000
KS ci ratio: 4.971909e-02	ci left: 1.288007e-03	ci right 1.353886e-03	k: 6207	n:4700000
PIK3CA   4700000 perm   11100 sec   (423 perm/sec)   p_kst 1.320638e-03   p_cons 2.340426e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 1.131605e+00	ci left: 1.165852e-06	ci right 4.178773e-06	k: 11	n:4710000
KS ci ratio: 4.967911e-02	ci left: 1.287369e-03	ci right 1.353161e-03	k: 6217	n:4710000
PIK3CA   4710000 perm   11144 sec   (423 perm/sec)   p_kst 1.319958e-03   p_cons 2.335456e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 1.131605e+00	ci left: 1.163382e-06	ci right 4.169920e-06	k: 11	n:4720000
KS ci ratio: 4.963524e-02	ci left: 1.286943e-03	ci right 1.352654e-03	k: 6228	n:4720000
PIK3CA   4720000 perm   11188 sec   (422 perm/sec)   p_kst 1.319492e-03   p_cons 2.330508e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 1.131605e+00	ci left: 1.160922e-06	ci right 4.161104e-06	k: 11	n:4730000
KS ci ratio: 4.959546e-02	ci left: 1.286310e-03	ci right 1.351935e-03	k: 6238	n:4730000
PIK3CA   4730000 perm   11232 sec   (421 perm/sec)   p_kst 1.318816e-03   p_cons 2.325581e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 1.087211e+00	ci left: 1.308139e-06	ci right 4.422271e-06	k: 12	n:4740000
KS ci ratio: 4.953197e-02	ci left: 1.286930e-03	ci right 1.352500e-03	k: 6254	n:4740000
PIK3CA   4740000 perm   11276 sec   (420 perm/sec)   p_kst 1.319409e-03   p_cons 2.531646e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 1.087211e+00	ci left: 1.305385e-06	ci right 4.412961e-06	k: 12	n:4750000
KS ci ratio: 4.949244e-02	ci left: 1.286300e-03	ci right 1.351784e-03	k: 6264	n:4750000
PIK3CA   4750000 perm   11320 sec   (420 perm/sec)   p_kst 1.318737e-03   p_cons 2.526316e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 1.087211e+00	ci left: 1.302642e-06	ci right 4.403690e-06	k: 12	n:4760000
KS ci ratio: 4.944512e-02	ci left: 1.286088e-03	ci right 1.351496e-03	k: 6276	n:4760000
PIK3CA   4760000 perm   11363 sec   (419 perm/sec)   p_kst 1.318487e-03   p_cons 2.521008e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 1.087211e+00	ci left: 1.299912e-06	ci right 4.394458e-06	k: 12	n:4770000
KS ci ratio: 4.940973e-02	ci left: 1.285255e-03	ci right 1.350573e-03	k: 6285	n:4770000
PIK3CA   4770000 perm   11407 sec   (418 perm/sec)   p_kst 1.317610e-03   p_cons 2.515723e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 1.087211e+00	ci left: 1.297192e-06	ci right 4.385265e-06	k: 12	n:4780000
KS ci ratio: 4.934695e-02	ci left: 1.285872e-03	ci right 1.351136e-03	k: 6301	n:4780000
PIK3CA   4780000 perm   11451 sec   (417 perm/sec)   p_kst 1.318201e-03   p_cons 2.510460e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 1.087211e+00	ci left: 1.294484e-06	ci right 4.376110e-06	k: 12	n:4790000
KS ci ratio: 4.930395e-02	ci left: 1.285456e-03	ci right 1.350640e-03	k: 6312	n:4790000
PIK3CA   4790000 perm   11496 sec   (417 perm/sec)   p_kst 1.317745e-03   p_cons 2.505219e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 1.087211e+00	ci left: 1.291787e-06	ci right 4.366993e-06	k: 12	n:4800000
KS ci ratio: 4.926107e-02	ci left: 1.285041e-03	ci right 1.350146e-03	k: 6323	n:4800000
PIK3CA   4800000 perm   11540 sec   (416 perm/sec)   p_kst 1.317292e-03   p_cons 2.500000e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 1.087211e+00	ci left: 1.289101e-06	ci right 4.357914e-06	k: 12	n:4810000
KS ci ratio: 4.921051e-02	ci left: 1.285039e-03	ci right 1.350075e-03	k: 6336	n:4810000
PIK3CA   4810000 perm   11585 sec   (415 perm/sec)   p_kst 1.317256e-03   p_cons 2.494802e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 1.087211e+00	ci left: 1.286427e-06	ci right 4.348873e-06	k: 12	n:4820000
KS ci ratio: 4.916399e-02	ci left: 1.284832e-03	ci right 1.349794e-03	k: 6348	n:4820000
PIK3CA   4820000 perm   11629 sec   (414 perm/sec)   p_kst 1.317012e-03   p_cons 2.489627e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 1.087211e+00	ci left: 1.283764e-06	ci right 4.339869e-06	k: 12	n:4830000
KS ci ratio: 4.910987e-02	ci left: 1.285035e-03	ci right 1.349934e-03	k: 6362	n:4830000
PIK3CA   4830000 perm   11674 sec   (414 perm/sec)   p_kst 1.317184e-03   p_cons 2.484472e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 1.087211e+00	ci left: 1.281111e-06	ci right 4.330902e-06	k: 12	n:4840000
KS ci ratio: 4.905593e-02	ci left: 1.285237e-03	ci right 1.350073e-03	k: 6376	n:4840000
PIK3CA   4840000 perm   11718 sec   (413 perm/sec)   p_kst 1.317355e-03   p_cons 2.479339e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 1.087211e+00	ci left: 1.278470e-06	ci right 4.321972e-06	k: 12	n:4850000
KS ci ratio: 4.899833e-02	ci left: 1.285642e-03	ci right 1.350420e-03	k: 6391	n:4850000
PIK3CA   4850000 perm   11763 sec   (412 perm/sec)   p_kst 1.317732e-03   p_cons 2.474227e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 1.087211e+00	ci left: 1.275839e-06	ci right 4.313079e-06	k: 12	n:4860000
KS ci ratio: 4.893710e-02	ci left: 1.286248e-03	ci right 1.350974e-03	k: 6407	n:4860000
PIK3CA   4860000 perm   11808 sec   (412 perm/sec)   p_kst 1.318313e-03   p_cons 2.469136e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 1.087211e+00	ci left: 1.273219e-06	ci right 4.304223e-06	k: 12	n:4870000
KS ci ratio: 4.889135e-02	ci left: 1.286041e-03	ci right 1.350694e-03	k: 6419	n:4870000
PIK3CA   4870000 perm   11853 sec   (411 perm/sec)   p_kst 1.318070e-03   p_cons 2.464066e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 1.087211e+00	ci left: 1.270610e-06	ci right 4.295403e-06	k: 12	n:4880000
KS ci ratio: 4.884573e-02	ci left: 1.285835e-03	ci right 1.350415e-03	k: 6431	n:4880000
PIK3CA   4880000 perm   11898 sec   (410 perm/sec)   p_kst 1.317828e-03   p_cons 2.459016e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 1.087211e+00	ci left: 1.268012e-06	ci right 4.286619e-06	k: 12	n:4890000
KS ci ratio: 4.879644e-02	ci left: 1.285831e-03	ci right 1.350345e-03	k: 6444	n:4890000
PIK3CA   4890000 perm   11944 sec   (409 perm/sec)   p_kst 1.317791e-03   p_cons 2.453988e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 1.087211e+00	ci left: 1.265424e-06	ci right 4.277871e-06	k: 12	n:4900000
KS ci ratio: 4.873220e-02	ci left: 1.286634e-03	ci right 1.351100e-03	k: 6461	n:4900000
PIK3CA   4900000 perm   11990 sec   (409 perm/sec)   p_kst 1.318571e-03   p_cons 2.448980e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 1.087211e+00	ci left: 1.262847e-06	ci right 4.269158e-06	k: 12	n:4910000
KS ci ratio: 4.868702e-02	ci left: 1.286428e-03	ci right 1.350822e-03	k: 6473	n:4910000
PIK3CA   4910000 perm   12034 sec   (408 perm/sec)   p_kst 1.318330e-03   p_cons 2.443992e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 1.087211e+00	ci left: 1.260280e-06	ci right 4.260481e-06	k: 12	n:4920000
KS ci ratio: 4.863821e-02	ci left: 1.286423e-03	ci right 1.350751e-03	k: 6486	n:4920000
PIK3CA   4920000 perm   12080 sec   (407 perm/sec)   p_kst 1.318293e-03   p_cons 2.439024e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 1.087211e+00	ci left: 1.257724e-06	ci right 4.251839e-06	k: 12	n:4930000
KS ci ratio: 4.858955e-02	ci left: 1.286419e-03	ci right 1.350680e-03	k: 6499	n:4930000
PIK3CA   4930000 perm   12126 sec   (407 perm/sec)   p_kst 1.318256e-03   p_cons 2.434077e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 1.087211e+00	ci left: 1.255178e-06	ci right 4.243232e-06	k: 12	n:4940000
KS ci ratio: 4.854103e-02	ci left: 1.286414e-03	ci right 1.350610e-03	k: 6512	n:4940000
PIK3CA   4940000 perm   12171 sec   (406 perm/sec)   p_kst 1.318219e-03   p_cons 2.429150e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 1.087211e+00	ci left: 1.252642e-06	ci right 4.234660e-06	k: 12	n:4950000
KS ci ratio: 4.848150e-02	ci left: 1.287009e-03	ci right 1.351153e-03	k: 6528	n:4950000
PIK3CA   4950000 perm   12217 sec   (405 perm/sec)   p_kst 1.318788e-03   p_cons 2.424242e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 1.087211e+00	ci left: 1.250117e-06	ci right 4.226122e-06	k: 12	n:4960000
KS ci ratio: 4.841849e-02	ci left: 1.287800e-03	ci right 1.351898e-03	k: 6545	n:4960000
PIK3CA   4960000 perm   12262 sec   (404 perm/sec)   p_kst 1.319556e-03   p_cons 2.419355e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 1.087211e+00	ci left: 1.247601e-06	ci right 4.217619e-06	k: 12	n:4970000
KS ci ratio: 4.836310e-02	ci left: 1.288190e-03	ci right 1.352232e-03	k: 6560	n:4970000
PIK3CA   4970000 perm   12308 sec   (404 perm/sec)   p_kst 1.319920e-03   p_cons 2.414487e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 1.087211e+00	ci left: 1.245096e-06	ci right 4.209150e-06	k: 12	n:4980000
KS ci ratio: 4.830055e-02	ci left: 1.288976e-03	ci right 1.352972e-03	k: 6577	n:4980000
PIK3CA   4980000 perm   12354 sec   (403 perm/sec)   p_kst 1.320683e-03   p_cons 2.409639e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 1.087211e+00	ci left: 1.242601e-06	ci right 4.200715e-06	k: 12	n:4990000
KS ci ratio: 4.823458e-02	ci left: 1.289956e-03	ci right 1.353911e-03	k: 6595	n:4990000
PIK3CA   4990000 perm   12399 sec   (402 perm/sec)   p_kst 1.321643e-03   p_cons 2.404810e-06   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 1.181923e+00	ci left: 9.590781e-07	ci right 3.678068e-06	k: 10	n:5000000
KS ci ratio: 4.818712e-02	ci left: 1.289945e-03	ci right 1.353835e-03	k: 6608	n:5000000
PIK3CA   5000000 perm   12447 sec   (402 perm/sec)   p_kst 1.321600e-03   p_cons 2.000000e-06   p_joint 0

Outputting figure to mutsig2_images.part000000000131/PIK3CA.40_3287_5000000_0.0013216_2e-06_0.png
                gene_name: PIK3CA
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 0.0013 
        ci_ks_bounds_left: 0.0013 
       ci_ks_bounds_right: 0.0014 
                   p_cons: 2.00e-06 
      ci_cons_bounds_left: 9.59e-07 
     ci_cons_bounds_right: 3.68e-06 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 2 percent done.
PIKFYVE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.991392e-02	ci left: 4.810557e-01	ci right 5.007496e-01	k: 4909	n:10000
Cons ci ratio: 2.371229e-02	ci left: 7.233032e-01	ci right 7.407614e-01	k: 7321	n:10000
KS ci ratio: 4.858565e-02	ci left: 3.846041e-01	ci right 4.038576e-01	k: 3942	n:10000
PIKFYVE   10000 perm   3 sec   (3231 perm/sec)   p_kst 3.942000e-01   p_cons 7.321000e-01   p_joint 4.909000e-01

Outputting figure to mutsig2_images.part000000000131/PIKFYVE.20_6472_10000_0.3942_0.7321_0.4909.png
                gene_name: PIKFYVE
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 4 percent done.
PKD1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.242237e-02	ci left: 4.506935e-01	ci right 4.703295e-01	k: 4605	n:10000
Cons ci ratio: 6.030900e-02	ci left: 2.879553e-01	ci right 3.059631e-01	k: 2969	n:10000
KS ci ratio: 3.740866e-02	ci left: 5.134552e-01	ci right 5.331312e-01	k: 5233	n:10000
PKD1L1   10000 perm   4 sec   (2608 perm/sec)   p_kst 5.233000e-01   p_cons 2.969000e-01   p_joint 4.605000e-01

Outputting figure to mutsig2_images.part000000000131/PKD1L1.19_8778_10000_0.5233_0.2969_0.4605.png
                gene_name: PKD1L1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 5 percent done.
PKD1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.709069e-02	ci left: 3.111584e-01	ci right 3.295464e-01	k: 3203	n:10000
Cons ci ratio: 2.149680e-02	ci left: 7.604092e-01	ci right 7.770340e-01	k: 7688	n:10000
KS ci ratio: 9.208707e-02	ci left: 1.462904e-01	ci right 1.605121e-01	k: 1533	n:10000
PKD1L2   10000 perm   4 sec   (2595 perm/sec)   p_kst 1.533000e-01   p_cons 7.688000e-01   p_joint 3.203000e-01

Outputting figure to mutsig2_images.part000000000131/PKD1L2.17_7621_10000_0.1533_0.7688_0.3203.png
                gene_name: PKD1L2
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 7 percent done.
PIK3CG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.044270e-01	ci left: 1.170141e-01	ci right 1.300061e-01	k: 1234	n:10000
Cons ci ratio: 4.699584e-02	ci left: 4.005369e-01	ci right 4.199155e-01	k: 4102	n:10000
KS ci ratio: 1.643869e-01	ci left: 4.936226e-02	ci right 5.829990e-02	k: 537	n:10000
PIK3CG   10000 perm   2 sec   (4373 perm/sec)   p_kst 5.370000e-02   p_cons 4.102000e-01   p_joint 1.234000e-01

Joint ci ratio: 1.012644e-01	ci left: 6.615984e-02	ci right 7.326587e-02	k: 1393	n:20000
Cons ci ratio: 3.325823e-02	ci left: 4.030226e-01	ci right 4.167037e-01	k: 8197	n:20000
KS ci ratio: 1.131092e-01	ci left: 5.343714e-02	ci right 5.989251e-02	k: 1132	n:20000
PIK3CG   20000 perm   5 sec   (3953 perm/sec)   p_kst 5.660000e-02   p_cons 4.098500e-01   p_joint 6.965000e-02

Joint ci ratio: 7.681783e-02	ci left: 7.679047e-02	ci right 8.295785e-02	k: 2395	n:30000
Cons ci ratio: 2.711029e-02	ci left: 4.050920e-01	ci right 4.162587e-01	k: 12320	n:30000
KS ci ratio: 9.289111e-02	ci left: 5.342467e-02	ci right 5.866173e-02	k: 1680	n:30000
PIK3CG   30000 perm   8 sec   (3820 perm/sec)   p_kst 5.600000e-02   p_cons 4.106667e-01   p_joint 7.983333e-02

Outputting figure to mutsig2_images.part000000000131/PIK3CG.14_3349_30000_0.056_0.41067_0.079833.png
                gene_name: PIK3CG
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.083 

Current progress: 9 percent done.
PIK3R4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.684031e-02	ci left: 1.985040e-01	ci right 2.144674e-01	k: 2064	n:10000
Cons ci ratio: 9.262005e-03	ci left: 9.426349e-01	ci right 9.515024e-01	k: 9472	n:10000
KS ci ratio: 1.620135e-01	ci left: 5.080410e-02	ci right 5.985714e-02	k: 552	n:10000
PIK3R4   10000 perm   3 sec   (3845 perm/sec)   p_kst 5.520000e-02   p_cons 9.472000e-01   p_joint 2.064000e-01

Joint ci ratio: 8.416306e-02	ci left: 9.371693e-02	ci right 1.020004e-01	k: 1956	n:20000
Cons ci ratio: 6.026665e-03	ci left: 9.519321e-01	ci right 9.577348e-01	k: 19098	n:20000
KS ci ratio: 1.155061e-01	ci left: 5.129666e-02	ci right 5.763366e-02	k: 1088	n:20000
PIK3R4   20000 perm   5 sec   (3666 perm/sec)   p_kst 5.440000e-02   p_cons 9.549000e-01   p_joint 9.780000e-02

Joint ci ratio: 6.977142e-02	ci left: 9.186873e-02	ci right 9.854323e-02	k: 2855	n:30000
Cons ci ratio: 4.929515e-03	ci left: 9.523198e-01	ci right 9.570583e-01	k: 28642	n:30000
KS ci ratio: 9.478754e-02	ci left: 5.137128e-02	ci right 5.651553e-02	k: 1617	n:30000
PIK3R4   30000 perm   8 sec   (3561 perm/sec)   p_kst 5.390000e-02   p_cons 9.547333e-01   p_joint 9.516667e-02

Outputting figure to mutsig2_images.part000000000131/PIK3R4.12_4153_30000_0.0539_0.95473_0.095167.png
                gene_name: PIK3R4
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.099 

Current progress: 11 percent done.
PIK3R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.534169e-02	ci left: 3.247555e-01	ci right 3.433413e-01	k: 3340	n:10000
Cons ci ratio: 6.190635e-02	ci left: 2.772555e-01	ci right 2.950692e-01	k: 2861	n:10000
KS ci ratio: 5.853744e-02	ci left: 3.004459e-01	ci right 3.186652e-01	k: 3095	n:10000
PIK3R1   10000 perm   3 sec   (3920 perm/sec)   p_kst 3.095000e-01   p_cons 2.861000e-01   p_joint 3.340000e-01

Outputting figure to mutsig2_images.part000000000131/PIK3R1.10_2365_10000_0.3095_0.2861_0.334.png
                gene_name: PIK3R1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 12 percent done.
PIWIL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.114718e-02	ci left: 4.658700e-01	ci right 4.855441e-01	k: 4757	n:10000
Cons ci ratio: 4.686731e-03	ci left: 9.835003e-01	ci right 9.882104e-01	k: 9860	n:10000
KS ci ratio: 5.765918e-02	ci left: 3.068925e-01	ci right 3.252147e-01	k: 3160	n:10000
PIWIL2   10000 perm   2 sec   (4995 perm/sec)   p_kst 3.160000e-01   p_cons 9.860000e-01   p_joint 4.757000e-01

Outputting figure to mutsig2_images.part000000000131/PIWIL2.10_3010_10000_0.316_0.986_0.4757.png
                gene_name: PIWIL2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 14 percent done.
PIWIL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.867750e-02	ci left: 8.072482e-01	ci right 8.225679e-01	k: 8150	n:10000
Cons ci ratio: 2.860469e-02	ci left: 6.430738e-01	ci right 6.618374e-01	k: 6525	n:10000
KS ci ratio: 3.270783e-02	ci left: 5.797835e-01	ci right 5.991643e-01	k: 5895	n:10000
PIWIL3   10000 perm   2 sec   (4520 perm/sec)   p_kst 5.895000e-01   p_cons 6.525000e-01   p_joint 8.150000e-01

Outputting figure to mutsig2_images.part000000000131/PIWIL3.10_2729_10000_0.5895_0.6525_0.815.png
                gene_name: PIWIL3
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 16 percent done.
PIK3C2G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.502725e-02	ci left: 7.013997e-01	ci right 7.192776e-01	k: 7104	n:10000
KS ci ratio: 1.129536e-02	ci left: 9.180131e-01	ci right 9.285388e-01	k: 9234	n:10000
PIK3C2G   10000 perm   3 sec   (3489 perm/sec)   p_kst 9.234000e-01   p_cons 7.104000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIK3C2G.9_4462_10000_0.9234_0.7104_1.png
                gene_name: PIK3C2G
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
PIK3C2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.852276e-02	ci left: 6.443816e-01	ci right 6.631288e-01	k: 6538	n:10000
Cons ci ratio: 2.862992e-02	ci left: 6.426714e-01	ci right 6.614400e-01	k: 6521	n:10000
KS ci ratio: 4.831215e-02	ci left: 3.872920e-01	ci right 4.065681e-01	k: 3969	n:10000
PIK3C2B   10000 perm   3 sec   (3825 perm/sec)   p_kst 3.969000e-01   p_cons 6.521000e-01   p_joint 6.538000e-01

Outputting figure to mutsig2_images.part000000000131/PIK3C2B.8_5033_10000_0.3969_0.6521_0.6538.png
                gene_name: PIK3C2B
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 20 percent done.
PITPNM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.214091e-01	ci left: 8.864084e-02	ci right 1.001967e-01	k: 943	n:10000
Cons ci ratio: 1.865137e-01	ci left: 3.834345e-02	ci right 4.632594e-02	k: 422	n:10000
KS ci ratio: 8.948304e-02	ci left: 1.537479e-01	ci right 1.682502e-01	k: 1609	n:10000
PITPNM3   10000 perm   2 sec   (4696 perm/sec)   p_kst 1.609000e-01   p_cons 4.220000e-02   p_joint 9.430000e-02

Joint ci ratio: 7.350328e-02	ci left: 1.199050e-01	ci right 1.291044e-01	k: 2489	n:20000
Cons ci ratio: 1.324614e-01	ci left: 3.916497e-02	ci right 4.476918e-02	k: 838	n:20000
KS ci ratio: 6.279915e-02	ci left: 1.579052e-01	ci right 1.681930e-01	k: 3260	n:20000
PITPNM3   20000 perm   5 sec   (4256 perm/sec)   p_kst 1.630000e-01   p_cons 4.190000e-02   p_joint 1.244500e-01

Joint ci ratio: 9.239720e-02	ci left: 5.397893e-02	ci right 5.924068e-02	k: 1697	n:30000
Cons ci ratio: 1.099219e-01	ci left: 3.842706e-02	ci right 4.292912e-02	k: 1219	n:30000
KS ci ratio: 5.072217e-02	ci left: 1.618054e-01	ci right 1.702594e-01	k: 4980	n:30000
PITPNM3   30000 perm   7 sec   (4068 perm/sec)   p_kst 1.660000e-01   p_cons 4.063333e-02   p_joint 5.656667e-02

Joint ci ratio: 7.612098e-02	ci left: 5.980340e-02	ci right 6.456040e-02	k: 2486	n:40000
Cons ci ratio: 9.464096e-02	ci left: 3.917540e-02	ci right 4.309157e-02	k: 1644	n:40000
KS ci ratio: 4.492561e-02	ci left: 1.562957e-01	ci right 1.635037e-01	k: 6395	n:40000
PITPNM3   40000 perm   10 sec   (3940 perm/sec)   p_kst 1.598750e-01   p_cons 4.110000e-02   p_joint 6.215000e-02

Outputting figure to mutsig2_images.part000000000131/PITPNM3.8_3005_40000_0.15987_0.0411_0.06215.png
                gene_name: PITPNM3
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.065 

Current progress: 21 percent done.
PIWIL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
Cons ci ratio: 1.377056e-02	ci left: 8.839084e-01	ci right 8.962634e-01	k: 8902	n:10000
KS ci ratio: 3.313660e-01	ci left: 1.151417e-02	ci right 1.617538e-02	k: 137	n:10000
PIWIL1   10000 perm   2 sec   (4321 perm/sec)   p_kst 1.370000e-02   p_cons 8.902000e-01   p_joint 3.560000e-02

Joint ci ratio: 1.455428e-01	ci left: 3.244754e-02	ci right 3.758880e-02	k: 699	n:20000
Cons ci ratio: 1.022230e-02	ci left: 8.757209e-01	ci right 8.847683e-01	k: 17606	n:20000
KS ci ratio: 2.443899e-01	ci left: 1.114729e-02	ci right 1.429674e-02	k: 253	n:20000
PIWIL1   20000 perm   5 sec   (3934 perm/sec)   p_kst 1.265000e-02   p_cons 8.803000e-01   p_joint 3.495000e-02

Joint ci ratio: 1.444266e-01	ci left: 2.223335e-02	ci right 2.572634e-02	k: 718	n:30000
Cons ci ratio: 8.303890e-03	ci left: 8.776540e-01	ci right 8.850053e-01	k: 26441	n:30000
KS ci ratio: 1.987540e-01	ci left: 1.152696e-02	ci right 1.410200e-02	k: 383	n:30000
PIWIL1   30000 perm   8 sec   (3731 perm/sec)   p_kst 1.276667e-02   p_cons 8.813667e-01   p_joint 2.393333e-02

Joint ci ratio: 1.067690e-01	ci left: 3.085682e-02	ci right 3.436146e-02	k: 1303	n:40000
Cons ci ratio: 7.160846e-03	ci left: 8.790511e-01	ci right 8.853933e-01	k: 35290	n:40000
KS ci ratio: 1.735050e-01	ci left: 1.150599e-02	ci right 1.371561e-02	k: 503	n:40000
PIWIL1   40000 perm   11 sec   (3655 perm/sec)   p_kst 1.257500e-02   p_cons 8.822500e-01   p_joint 3.257500e-02

Joint ci ratio: 9.265584e-02	ci left: 3.295644e-02	ci right 3.617789e-02	k: 1727	n:50000
Cons ci ratio: 6.398928e-03	ci left: 8.795846e-01	ci right 8.852509e-01	k: 44122	n:50000
KS ci ratio: 1.550634e-01	ci left: 1.164070e-02	ci right 1.361649e-02	k: 630	n:50000
PIWIL1   50000 perm   14 sec   (3502 perm/sec)   p_kst 1.260000e-02   p_cons 8.824400e-01   p_joint 3.454000e-02

Joint ci ratio: 9.227424e-02	ci left: 2.785099e-02	ci right 3.056147e-02	k: 1751	n:60000
Cons ci ratio: 5.852795e-03	ci left: 8.794255e-01	ci right 8.846042e-01	k: 52922	n:60000
KS ci ratio: 1.418570e-01	ci left: 1.167456e-02	ci right 1.347305e-02	k: 753	n:60000
PIWIL1   60000 perm   17 sec   (3440 perm/sec)   p_kst 1.255000e-02   p_cons 8.820333e-01   p_joint 2.918333e-02

Joint ci ratio: 8.757096e-02	ci left: 2.660858e-02	ci right 2.905934e-02	k: 1947	n:70000
Cons ci ratio: 5.428768e-03	ci left: 8.792269e-01	ci right 8.840271e-01	k: 61715	n:70000
KS ci ratio: 1.324570e-01	ci left: 1.153806e-02	ci right 1.318845e-02	k: 864	n:70000
PIWIL1   70000 perm   21 sec   (3371 perm/sec)   p_kst 1.234286e-02   p_cons 8.816429e-01   p_joint 2.781429e-02

Joint ci ratio: 8.404155e-02	ci left: 2.536122e-02	ci right 2.759830e-02	k: 2117	n:80000
Cons ci ratio: 4.872856e-03	ci left: 8.877988e-01	ci right 8.921479e-01	k: 71199	n:80000
KS ci ratio: 1.231210e-01	ci left: 1.174158e-02	ci right 1.329407e-02	k: 1000	n:80000
PIWIL1   80000 perm   24 sec   (3312 perm/sec)   p_kst 1.250000e-02   p_cons 8.899875e-01   p_joint 2.646250e-02

Joint ci ratio: 8.289473e-02	ci left: 2.323850e-02	ci right 2.525899e-02	k: 2181	n:90000
Cons ci ratio: 4.602201e-03	ci left: 8.875793e-01	ci right 8.916845e-01	k: 80068	n:90000
KS ci ratio: 1.159819e-01	ci left: 1.180592e-02	ci right 1.327020e-02	k: 1127	n:90000
PIWIL1   90000 perm   28 sec   (3267 perm/sec)   p_kst 1.252222e-02   p_cons 8.896444e-01   p_joint 2.423333e-02

Joint ci ratio: 7.776509e-02	ci left: 2.381550e-02	ci right 2.575220e-02	k: 2477	n:100000
Cons ci ratio: 4.365229e-03	ci left: 8.877219e-01	ci right 8.916154e-01	k: 88968	n:100000
KS ci ratio: 1.097791e-01	ci left: 1.189839e-02	ci right 1.329010e-02	k: 1258	n:100000
PIWIL1   100000 perm   31 sec   (3189 perm/sec)   p_kst 1.258000e-02   p_cons 8.896800e-01   p_joint 2.477000e-02

Joint ci ratio: 7.462191e-02	ci left: 2.355872e-02	ci right 2.539374e-02	k: 2691	n:110000
Cons ci ratio: 4.169547e-03	ci left: 8.874585e-01	ci right 8.911755e-01	k: 97826	n:110000
KS ci ratio: 1.049354e-01	ci left: 1.186948e-02	ci right 1.319277e-02	k: 1377	n:110000
PIWIL1   110000 perm   35 sec   (3158 perm/sec)   p_kst 1.251818e-02   p_cons 8.893273e-01   p_joint 2.446364e-02

Joint ci ratio: 7.184389e-02	ci left: 2.333789e-02	ci right 2.508520e-02	k: 2904	n:120000
Cons ci ratio: 3.988865e-03	ci left: 8.876958e-01	ci right 8.912520e-01	k: 106738	n:120000
KS ci ratio: 1.010576e-01	ci left: 1.175714e-02	ci right 1.301659e-02	k: 1485	n:120000
PIWIL1   120000 perm   38 sec   (3118 perm/sec)   p_kst 1.237500e-02   p_cons 8.894833e-01   p_joint 2.420000e-02

Joint ci ratio: 6.861409e-02	ci left: 2.365127e-02	ci right 2.533926e-02	k: 3183	n:130000
Cons ci ratio: 3.836394e-03	ci left: 8.875586e-01	ci right 8.909778e-01	k: 115606	n:130000
KS ci ratio: 9.776656e-02	ci left: 1.161781e-02	ci right 1.281948e-02	k: 1587	n:130000
PIWIL1   130000 perm   42 sec   (3078 perm/sec)   p_kst 1.220769e-02   p_cons 8.892769e-01   p_joint 2.448462e-02

Outputting figure to mutsig2_images.part000000000131/PIWIL1.8_2666_130000_0.012208_0.88928_0.024485.png
                gene_name: PIWIL1
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.025 

Current progress: 23 percent done.
PIWIL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.052986e-02	ci left: 6.128138e-01	ci right 6.319149e-01	k: 6224	n:10000
Cons ci ratio: 3.811947e-02	ci left: 5.040511e-01	ci right 5.237408e-01	k: 5139	n:10000
KS ci ratio: 3.266730e-02	ci left: 5.803855e-01	ci right 5.997620e-01	k: 5901	n:10000
PIWIL4   10000 perm   2 sec   (4944 perm/sec)   p_kst 5.901000e-01   p_cons 5.139000e-01   p_joint 6.224000e-01

Outputting figure to mutsig2_images.part000000000131/PIWIL4.8_2639_10000_0.5901_0.5139_0.6224.png
                gene_name: PIWIL4
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 25 percent done.
PIGR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.541090e-02	ci left: 4.171780e-01	ci right 4.366646e-01	k: 4269	n:10000
Cons ci ratio: 2.233612e-02	ci left: 7.463458e-01	ci right 7.633055e-01	k: 7549	n:10000
KS ci ratio: 5.815626e-02	ci left: 3.032226e-01	ci right 3.214868e-01	k: 3123	n:10000
PIGR   10000 perm   2 sec   (4685 perm/sec)   p_kst 3.123000e-01   p_cons 7.549000e-01   p_joint 4.269000e-01

Outputting figure to mutsig2_images.part000000000131/PIGR.7_2335_10000_0.3123_0.7549_0.4269.png
                gene_name: PIGR
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 27 percent done.
PIK3C3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.370219e-02	ci left: 2.123080e-01	ci right 2.286552e-01	k: 2204	n:10000
Cons ci ratio: 6.604575e-02	ci left: 2.518194e-01	ci right 2.691203e-01	k: 2604	n:10000
KS ci ratio: 8.002699e-02	ci left: 1.856990e-01	ci right 2.012800e-01	k: 1934	n:10000
PIK3C3   10000 perm   2 sec   (4928 perm/sec)   p_kst 1.934000e-01   p_cons 2.604000e-01   p_joint 2.204000e-01

Outputting figure to mutsig2_images.part000000000131/PIK3C3.7_2764_10000_0.1934_0.2604_0.2204.png
                gene_name: PIK3C3
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 29 percent done.
PIK3R6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.030862e-02	ci left: 7.802612e-01	ci right 7.963705e-01	k: 7884	n:10000
KS ci ratio: 4.477642e-02	ci left: 4.240569e-01	ci right 4.435817e-01	k: 4338	n:10000
PIK3R6   10000 perm   2 sec   (5107 perm/sec)   p_kst 4.338000e-01   p_cons 7.884000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIK3R6.6_2340_10000_0.4338_0.7884_1.png
                gene_name: PIK3R6
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
PJA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.508072e-02	ci left: 1.675982e-01	ci right 1.825915e-01	k: 1750	n:10000
Cons ci ratio: 2.240477e-01	ci left: 2.636581e-02	ci right 3.311184e-02	k: 296	n:10000
KS ci ratio: 1.952724e-02	ci left: 7.932406e-01	ci right 8.089836e-01	k: 8012	n:10000
PJA1   10000 perm   2 sec   (5181 perm/sec)   p_kst 8.012000e-01   p_cons 2.960000e-02   p_joint 1.750000e-01

Joint ci ratio: 4.552525e-02	ci left: 2.642530e-01	ci right 2.766138e-01	k: 5408	n:20000
Cons ci ratio: 1.556167e-01	ci left: 2.835269e-02	ci right 3.318501e-02	k: 614	n:20000
KS ci ratio: 1.374687e-02	ci left: 7.970148e-01	ci right 8.080971e-01	k: 16052	n:20000
PJA1   20000 perm   4 sec   (4644 perm/sec)   p_kst 8.026000e-01   p_cons 3.070000e-02   p_joint 2.704000e-01

Joint ci ratio: 4.169641e-02	ci left: 2.227992e-01	ci right 2.323203e-01	k: 6826	n:30000
Cons ci ratio: 1.266724e-01	ci left: 2.897069e-02	ci right 3.292083e-02	k: 927	n:30000
KS ci ratio: 1.118877e-02	ci left: 7.990585e-01	ci right 8.080826e-01	k: 24108	n:30000
PJA1   30000 perm   7 sec   (4440 perm/sec)   p_kst 8.036000e-01   p_cons 3.090000e-02   p_joint 2.275333e-01

Joint ci ratio: 4.458587e-02	ci left: 1.583271e-01	ci right 1.655721e-01	k: 6477	n:40000
Cons ci ratio: 1.099007e-01	ci left: 2.912846e-02	ci right 3.254010e-02	k: 1232	n:40000
KS ci ratio: 9.644428e-03	ci left: 8.011583e-01	ci right 8.089474e-01	k: 32203	n:40000
PJA1   40000 perm   10 sec   (4180 perm/sec)   p_kst 8.050750e-01   p_cons 3.080000e-02   p_joint 1.619250e-01

Joint ci ratio: 4.669822e-02	ci left: 1.206281e-01	ci right 1.264157e-01	k: 6175	n:50000
Cons ci ratio: 1.080249e-01	ci left: 2.427217e-02	ci right 2.706327e-02	k: 1282	n:50000
KS ci ratio: 8.678264e-03	ci left: 7.996674e-01	ci right 8.066573e-01	k: 40159	n:50000
PJA1   50000 perm   12 sec   (4061 perm/sec)   p_kst 8.031800e-01   p_cons 2.564000e-02   p_joint 1.235000e-01

Joint ci ratio: 4.174786e-02	ci left: 1.254356e-01	ci right 1.308004e-01	k: 7686	n:60000
Cons ci ratio: 9.750070e-02	ci left: 2.495281e-02	ci right 2.752662e-02	k: 1573	n:60000
KS ci ratio: 8.117821e-03	ci left: 7.920992e-01	ci right 7.985722e-01	k: 47721	n:60000
PJA1   60000 perm   15 sec   (3990 perm/sec)   p_kst 7.953500e-01   p_cons 2.621667e-02   p_joint 1.281000e-01

Outputting figure to mutsig2_images.part000000000131/PJA1.6_1936_60000_0.79535_0.026217_0.1281.png
                gene_name: PJA1
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 32 percent done.
PIK3C2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.204855e-02	ci left: 2.201034e-01	ci right 2.366552e-01	k: 2283	n:10000
Cons ci ratio: 1.699685e-01	ci left: 4.619368e-02	ci right 5.487054e-02	k: 504	n:10000
KS ci ratio: 2.207059e-02	ci left: 7.507962e-01	ci right 7.676526e-01	k: 7593	n:10000
PIK3C2A   10000 perm   2 sec   (4142 perm/sec)   p_kst 7.593000e-01   p_cons 5.040000e-02   p_joint 2.283000e-01

Joint ci ratio: 5.951412e-02	ci left: 1.729185e-01	ci right 1.835752e-01	k: 3564	n:20000
Cons ci ratio: 1.159005e-01	ci left: 5.095625e-02	ci right 5.727417e-02	k: 1081	n:20000
KS ci ratio: 1.545048e-02	ci left: 7.569931e-01	ci right 7.688303e-01	k: 15259	n:20000
PIK3C2A   20000 perm   5 sec   (3799 perm/sec)   p_kst 7.629500e-01   p_cons 5.405000e-02   p_joint 1.782000e-01

Joint ci ratio: 4.421163e-02	ci left: 2.030222e-01	ci right 2.122345e-01	k: 6228	n:30000
Cons ci ratio: 9.444866e-02	ci left: 5.172973e-02	ci right 5.689034e-02	k: 1628	n:30000
KS ci ratio: 1.261469e-02	ci left: 7.581125e-01	ci right 7.677699e-01	k: 22889	n:30000
PIK3C2A   30000 perm   8 sec   (3655 perm/sec)   p_kst 7.629667e-01   p_cons 5.426667e-02   p_joint 2.076000e-01

Outputting figure to mutsig2_images.part000000000131/PIK3C2A.5_5189_30000_0.76297_0.054267_0.2076.png
                gene_name: PIK3C2A
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 34 percent done.
PITPNM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.652740e-02	ci left: 8.419327e-01	ci right 8.560633e-01	k: 8491	n:10000
Cons ci ratio: 5.153779e-02	ci left: 3.569465e-01	ci right 3.759313e-01	k: 3664	n:10000
KS ci ratio: 2.321706e-02	ci left: 7.315870e-01	ci right 7.488729e-01	k: 7403	n:10000
PITPNM2   10000 perm   2 sec   (4146 perm/sec)   p_kst 7.403000e-01   p_cons 3.664000e-01   p_joint 8.491000e-01

Outputting figure to mutsig2_images.part000000000131/PITPNM2.5_4146_10000_0.7403_0.3664_0.8491.png
                gene_name: PITPNM2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 36 percent done.
PIAS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.875766e-02	ci left: 4.957504e-01	ci right 5.154464e-01	k: 5056	n:10000
Cons ci ratio: 2.907287e-02	ci left: 6.356307e-01	ci right 6.544847e-01	k: 6451	n:10000
KS ci ratio: 6.030900e-02	ci left: 2.879553e-01	ci right 3.059631e-01	k: 2969	n:10000
PIAS3   10000 perm   2 sec   (5514 perm/sec)   p_kst 2.969000e-01   p_cons 6.451000e-01   p_joint 5.056000e-01

Outputting figure to mutsig2_images.part000000000131/PIAS3.4_1943_10000_0.2969_0.6451_0.5056.png
                gene_name: PIAS3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 38 percent done.
PIGK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.569007e-02	ci left: 5.368806e-01	ci right 5.564922e-01	k: 5467	n:10000
Cons ci ratio: 2.812068e-02	ci left: 6.508212e-01	ci right 6.694854e-01	k: 6602	n:10000
KS ci ratio: 6.478410e-02	ci left: 2.592386e-01	ci right 2.766968e-01	k: 2679	n:10000
PIGK   10000 perm   2 sec   (5511 perm/sec)   p_kst 2.679000e-01   p_cons 6.602000e-01   p_joint 5.467000e-01

Outputting figure to mutsig2_images.part000000000131/PIGK.4_1232_10000_0.2679_0.6602_0.5467.png
                gene_name: PIGK
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 39 percent done.
PIGX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
Cons ci ratio: 1.801579e-01	ci left: 4.111563e-02	ci right 4.935192e-02	k: 451	n:10000
KS ci ratio: 1.409920e-02	ci left: 8.790966e-01	ci right 8.916780e-01	k: 8855	n:10000
PIGX   10000 perm   2 sec   (6320 perm/sec)   p_kst 8.855000e-01   p_cons 4.510000e-02   p_joint 1.802000e-01

Joint ci ratio: 4.515893e-02	ci left: 2.674298e-01	ci right 2.798361e-01	k: 5472	n:20000
Cons ci ratio: 1.208834e-01	ci left: 4.692297e-02	ci right 5.300872e-02	k: 998	n:20000
KS ci ratio: 1.009582e-02	ci left: 8.783630e-01	ci right 8.873253e-01	k: 17658	n:20000
PIGX   20000 perm   4 sec   (5541 perm/sec)   p_kst 8.829000e-01   p_cons 4.990000e-02   p_joint 2.736000e-01

Joint ci ratio: 4.321531e-02	ci left: 2.105607e-01	ci right 2.198945e-01	k: 6456	n:30000
Cons ci ratio: 9.882319e-02	ci left: 4.736547e-02	ci right 5.232217e-02	k: 1494	n:30000
KS ci ratio: 8.233598e-03	ci left: 8.794442e-01	ci right 8.867481e-01	k: 26494	n:30000
PIGX   30000 perm   6 sec   (5248 perm/sec)   p_kst 8.831333e-01   p_cons 4.980000e-02   p_joint 2.152000e-01

Outputting figure to mutsig2_images.part000000000131/PIGX.4_859_30000_0.88313_0.0498_0.2152.png
                gene_name: PIGX
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 41 percent done.
PIK3R3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.217497e-01	ci left: 2.693317e-02	ci right 3.374407e-02	k: 302	n:10000
Cons ci ratio: 1.642256e-01	ci left: 4.945836e-02	ci right 5.840374e-02	k: 538	n:10000
KS ci ratio: 1.900600e-01	ci left: 3.691153e-02	ci right 4.475883e-02	k: 407	n:10000
PIK3R3   10000 perm   2 sec   (5576 perm/sec)   p_kst 4.070000e-02   p_cons 5.380000e-02   p_joint 3.020000e-02

Joint ci ratio: 1.518370e-01	ci left: 2.979665e-02	ci right 3.474056e-02	k: 644	n:20000
Cons ci ratio: 1.184690e-01	ci left: 4.881745e-02	ci right 5.501365e-02	k: 1037	n:20000
KS ci ratio: 1.317256e-01	ci left: 3.960069e-02	ci right 4.523332e-02	k: 847	n:20000
PIK3R3   20000 perm   4 sec   (4999 perm/sec)   p_kst 4.235000e-02   p_cons 5.185000e-02   p_joint 3.220000e-02

Joint ci ratio: 1.861452e-01	ci left: 1.320961e-02	ci right 1.595225e-02	k: 436	n:30000
Cons ci ratio: 9.576109e-02	ci left: 5.036128e-02	ci right 5.545908e-02	k: 1586	n:30000
KS ci ratio: 1.115522e-01	ci left: 3.732391e-02	ci right 4.176583e-02	k: 1185	n:30000
PIK3R3   30000 perm   6 sec   (4762 perm/sec)   p_kst 3.950000e-02   p_cons 5.286667e-02   p_joint 1.453333e-02

Joint ci ratio: 1.519060e-01	ci left: 1.512992e-02	ci right 1.764100e-02	k: 654	n:40000
Cons ci ratio: 8.276678e-02	ci left: 5.089805e-02	ci right 5.531711e-02	k: 2123	n:40000
KS ci ratio: 9.814697e-02	ci left: 3.646471e-02	ci right 4.025268e-02	k: 1533	n:40000
PIK3R3   40000 perm   9 sec   (4618 perm/sec)   p_kst 3.832500e-02   p_cons 5.307500e-02   p_joint 1.635000e-02

Joint ci ratio: 1.348472e-01	ci left: 1.549822e-02	ci right 1.775840e-02	k: 830	n:50000
Cons ci ratio: 7.419147e-02	ci left: 5.091475e-02	ci right 5.485736e-02	k: 2643	n:50000
KS ci ratio: 8.791672e-02	ci left: 3.655632e-02	ci right 3.993756e-02	k: 1911	n:50000
PIK3R3   50000 perm   11 sec   (4494 perm/sec)   p_kst 3.822000e-02   p_cons 5.286000e-02   p_joint 1.660000e-02

Joint ci ratio: 1.144804e-01	ci left: 1.806835e-02	ci right 2.027851e-02	k: 1149	n:60000
Cons ci ratio: 6.808836e-02	ci left: 5.056476e-02	ci right 5.414536e-02	k: 3140	n:60000
KS ci ratio: 8.024583e-02	ci left: 3.671301e-02	ci right 3.979853e-02	k: 2294	n:60000
PIK3R3   60000 perm   14 sec   (4392 perm/sec)   p_kst 3.823333e-02   p_cons 5.233333e-02   p_joint 1.915000e-02

Joint ci ratio: 9.752989e-02	ci left: 2.145589e-02	ci right 2.366964e-02	k: 1578	n:70000
Cons ci ratio: 6.284334e-02	ci left: 5.099994e-02	ci right 5.432298e-02	k: 3685	n:70000
KS ci ratio: 7.387118e-02	ci left: 3.724107e-02	ci right 4.011162e-02	k: 2706	n:70000
PIK3R3   70000 perm   16 sec   (4296 perm/sec)   p_kst 3.865714e-02   p_cons 5.264286e-02   p_joint 2.254286e-02

Outputting figure to mutsig2_images.part000000000131/PIK3R3.4_1426_70000_0.038657_0.052643_0.022543.png
                gene_name: PIK3R3
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.024 

Current progress: 43 percent done.
PIP5K1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.635127e-02	ci left: 4.072119e-01	ci right 4.266366e-01	k: 4169	n:10000
Cons ci ratio: 6.387201e-02	ci left: 2.647803e-01	ci right 2.823518e-01	k: 2735	n:10000
KS ci ratio: 6.513262e-02	ci left: 2.571609e-01	ci right 2.745757e-01	k: 2658	n:10000
PIP5K1C   10000 perm   3 sec   (3869 perm/sec)   p_kst 2.658000e-01   p_cons 2.735000e-01   p_joint 4.169000e-01

Outputting figure to mutsig2_images.part000000000131/PIP5K1C.4_2079_10000_0.2658_0.2735_0.4169.png
                gene_name: PIP5K1C
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 45 percent done.
PIPOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.539863e-02	ci left: 6.952470e-01	ci right 7.132339e-01	k: 7043	n:10000
Cons ci ratio: 9.508989e-03	ci left: 9.398315e-01	ci right 9.489074e-01	k: 9445	n:10000
KS ci ratio: 3.583430e-02	ci left: 5.348776e-01	ci right 5.544964e-01	k: 5447	n:10000
PIPOX   10000 perm   2 sec   (5777 perm/sec)   p_kst 5.447000e-01   p_cons 9.445000e-01   p_joint 7.043000e-01

Outputting figure to mutsig2_images.part000000000131/PIPOX.4_1205_10000_0.5447_0.9445_0.7043.png
                gene_name: PIPOX
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 46 percent done.
PITRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
Cons ci ratio: 2.002234e-02	ci left: 7.850257e-01	ci right 8.010033e-01	k: 7931	n:10000
KS ci ratio: 1.745679e-01	ci left: 4.379660e-02	ci right 5.226918e-02	k: 479	n:10000
PITRM1   10000 perm   2 sec   (4642 perm/sec)   p_kst 4.790000e-02   p_cons 7.931000e-01   p_joint 8.370000e-02

Joint ci ratio: 8.294693e-02	ci left: 9.626821e-02	ci right 1.046484e-01	k: 2008	n:20000
Cons ci ratio: 1.422024e-02	ci left: 7.859542e-01	ci right 7.972608e-01	k: 15833	n:20000
KS ci ratio: 1.259415e-01	ci left: 4.328340e-02	ci right 4.914944e-02	k: 923	n:20000
PITRM1   20000 perm   5 sec   (4227 perm/sec)   p_kst 4.615000e-02   p_cons 7.916500e-01   p_joint 1.004000e-01

Joint ci ratio: 7.917639e-02	ci left: 7.253493e-02	ci right 7.854757e-02	k: 2265	n:30000
Cons ci ratio: 1.157025e-02	ci left: 7.881688e-01	ci right 7.973745e-01	k: 23784	n:30000
KS ci ratio: 1.038570e-01	ci left: 4.297420e-02	ci right 4.771435e-02	k: 1359	n:30000
PITRM1   30000 perm   7 sec   (4100 perm/sec)   p_kst 4.530000e-02   p_cons 7.928000e-01   p_joint 7.550000e-02

Joint ci ratio: 5.425207e-02	ci left: 1.123091e-01	ci right 1.185968e-01	k: 4617	n:40000
Cons ci ratio: 9.976630e-03	ci left: 7.902295e-01	ci right 7.981778e-01	k: 31769	n:40000
KS ci ratio: 9.263300e-02	ci left: 4.086166e-02	ci right 4.485505e-02	k: 1713	n:40000
PITRM1   40000 perm   10 sec   (4021 perm/sec)   p_kst 4.282500e-02   p_cons 7.942250e-01   p_joint 1.154250e-01

Outputting figure to mutsig2_images.part000000000131/PITRM1.4_3222_40000_0.042825_0.79422_0.11542.png
                gene_name: PITRM1
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 48 percent done.
PJA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.629514e-01	ci left: 5.022725e-02	ci right 5.923435e-02	k: 546	n:10000
Cons ci ratio: 5.369981e-01	ci left: 3.885975e-03	ci right 6.813584e-03	k: 52	n:10000
KS ci ratio: 1.207470e-02	ci left: 9.077165e-01	ci right 9.188414e-01	k: 9134	n:10000
PJA2   10000 perm   2 sec   (5166 perm/sec)   p_kst 9.134000e-01   p_cons 5.200000e-03   p_joint 5.460000e-02

Joint ci ratio: 1.814617e-01	ci left: 2.072815e-02	ci right 2.491218e-02	k: 455	n:20000
Cons ci ratio: 3.677103e-01	ci left: 4.613191e-03	ci right 6.734416e-03	k: 112	n:20000
KS ci ratio: 8.753156e-03	ci left: 9.052862e-01	ci right 9.132944e-01	k: 18187	n:20000
PJA2   20000 perm   4 sec   (4598 perm/sec)   p_kst 9.093500e-01   p_cons 5.600000e-03   p_joint 2.275000e-02

Joint ci ratio: 1.421147e-01	ci left: 2.297315e-02	ci right 2.651970e-02	k: 741	n:30000
Cons ci ratio: 2.980342e-01	ci left: 4.879595e-03	ci right 6.618225e-03	k: 171	n:30000
KS ci ratio: 7.160223e-03	ci left: 9.057229e-01	ci right 9.122643e-01	k: 27271	n:30000
PJA2   30000 perm   7 sec   (4459 perm/sec)   p_kst 9.090333e-01   p_cons 5.700000e-03   p_joint 2.470000e-02

Joint ci ratio: 1.024989e-01	ci left: 3.346411e-02	ci right 3.710376e-02	k: 1410	n:40000
Cons ci ratio: 2.611784e-01	ci left: 4.868911e-03	ci right 6.354248e-03	k: 223	n:40000
KS ci ratio: 6.212308e-03	ci left: 9.058604e-01	ci right 9.115301e-01	k: 36349	n:40000
PJA2   40000 perm   9 sec   (4353 perm/sec)   p_kst 9.087250e-01   p_cons 5.575000e-03   p_joint 3.525000e-02

Joint ci ratio: 8.581509e-02	ci left: 3.833830e-02	ci right 4.179536e-02	k: 2002	n:50000
Cons ci ratio: 2.353018e-01	ci left: 4.870588e-03	ci right 6.187821e-03	k: 275	n:50000
KS ci ratio: 5.522305e-03	ci left: 9.071944e-01	ci right 9.122379e-01	k: 45487	n:50000
PJA2   50000 perm   12 sec   (4284 perm/sec)   p_kst 9.097400e-01   p_cons 5.500000e-03   p_joint 4.004000e-02

Joint ci ratio: 6.132005e-02	ci left: 6.180797e-02	ci right 6.573435e-02	k: 3825	n:60000
Cons ci ratio: 2.175250e-01	ci left: 4.797767e-03	ci right 5.984182e-03	k: 322	n:60000
KS ci ratio: 5.052543e-03	ci left: 9.070414e-01	ci right 9.116523e-01	k: 54562	n:60000
PJA2   60000 perm   14 sec   (4201 perm/sec)   p_kst 9.093667e-01   p_cons 5.366667e-03   p_joint 6.375000e-02

Joint ci ratio: 8.886990e-02	ci left: 2.583974e-02	ci right 2.825682e-02	k: 1892	n:70000
Cons ci ratio: 2.027003e-01	ci left: 4.775570e-03	ci right 5.866054e-03	k: 371	n:70000
KS ci ratio: 4.677572e-03	ci left: 9.072206e-01	ci right 9.114883e-01	k: 63656	n:70000
PJA2   70000 perm   17 sec   (4136 perm/sec)   p_kst 9.093714e-01   p_cons 5.300000e-03   p_joint 2.702857e-02

Joint ci ratio: 8.393984e-02	ci left: 2.542244e-02	ci right 2.766208e-02	k: 2122	n:80000
Cons ci ratio: 1.919243e-01	ci left: 4.689564e-03	ci right 5.696833e-03	k: 414	n:80000
KS ci ratio: 4.393900e-03	ci left: 9.066577e-01	ci right 9.106626e-01	k: 72694	n:80000
PJA2   80000 perm   20 sec   (4054 perm/sec)   p_kst 9.086750e-01   p_cons 5.175000e-03   p_joint 2.652500e-02

Joint ci ratio: 8.303132e-02	ci left: 2.316230e-02	ci right 2.517964e-02	k: 2174	n:90000
Cons ci ratio: 1.841215e-01	ci left: 4.549647e-03	ci right 5.482696e-03	k: 450	n:90000
KS ci ratio: 4.132252e-03	ci left: 9.071919e-01	ci right 9.109594e-01	k: 81818	n:90000
PJA2   90000 perm   23 sec   (3991 perm/sec)   p_kst 9.090889e-01   p_cons 5.000000e-03   p_joint 2.415556e-02

Joint ci ratio: 8.358702e-02	ci left: 2.061972e-02	ci right 2.242818e-02	k: 2151	n:100000
Cons ci ratio: 1.762911e-01	ci left: 4.486180e-03	ci right 5.362914e-03	k: 491	n:100000
KS ci ratio: 3.914937e-03	ci left: 9.075133e-01	ci right 9.110830e-01	k: 90931	n:100000
PJA2   100000 perm   25 sec   (3926 perm/sec)   p_kst 9.093100e-01   p_cons 4.910000e-03   p_joint 2.151000e-02

Joint ci ratio: 8.100424e-02	ci left: 2.000038e-02	ci right 2.169775e-02	k: 2292	n:110000
Cons ci ratio: 1.698625e-01	ci left: 4.408823e-03	ci right 5.235800e-03	k: 529	n:110000
KS ci ratio: 3.727610e-03	ci left: 9.078259e-01	ci right 9.112252e-01	k: 100049	n:110000
PJA2   110000 perm   28 sec   (3864 perm/sec)   p_kst 9.095364e-01   p_cons 4.809091e-03   p_joint 2.083636e-02

Joint ci ratio: 8.267083e-02	ci left: 1.763077e-02	ci right 1.915929e-02	k: 2206	n:120000
Cons ci ratio: 1.635117e-01	ci left: 4.376817e-03	ci right 5.164076e-03	k: 571	n:120000
KS ci ratio: 3.571500e-03	ci left: 9.077787e-01	ci right 9.110348e-01	k: 109130	n:120000
PJA2   120000 perm   32 sec   (3803 perm/sec)   p_kst 9.094167e-01   p_cons 4.758333e-03   p_joint 1.838333e-02

Joint ci ratio: 7.125041e-02	ci left: 2.194250e-02	ci right 2.357119e-02	k: 2957	n:130000
Cons ci ratio: 1.548124e-01	ci left: 4.527648e-03	ci right 5.294692e-03	k: 637	n:130000
KS ci ratio: 3.434288e-03	ci left: 9.077026e-01	ci right 9.108329e-01	k: 118206	n:130000
PJA2   130000 perm   35 sec   (3745 perm/sec)   p_kst 9.092769e-01   p_cons 4.900000e-03   p_joint 2.274615e-02

Joint ci ratio: 7.292537e-02	ci left: 1.948347e-02	ci right 2.096506e-02	k: 2830	n:140000
Cons ci ratio: 1.502926e-01	ci left: 4.472174e-03	ci right 5.205709e-03	k: 676	n:140000
KS ci ratio: 3.315767e-03	ci left: 9.074382e-01	ci right 9.104591e-01	k: 127254	n:140000
PJA2   140000 perm   38 sec   (3688 perm/sec)   p_kst 9.089571e-01   p_cons 4.828571e-03   p_joint 2.021429e-02

Joint ci ratio: 6.937724e-02	ci left: 2.011649e-02	ci right 2.156878e-02	k: 3125	n:150000
Cons ci ratio: 1.451319e-01	ci left: 4.488627e-03	ci right 5.197388e-03	k: 725	n:150000
KS ci ratio: 3.203790e-03	ci left: 9.074661e-01	ci right 9.103847e-01	k: 136340	n:150000
PJA2   150000 perm   41 sec   (3615 perm/sec)   p_kst 9.089333e-01   p_cons 4.833333e-03   p_joint 2.083333e-02

Joint ci ratio: 6.927661e-02	ci left: 1.893865e-02	ci right 2.030384e-02	k: 3138	n:160000
Cons ci ratio: 1.405598e-01	ci left: 4.497368e-03	ci right 5.183264e-03	k: 773	n:160000
KS ci ratio: 3.105018e-03	ci left: 9.073536e-01	ci right 9.101815e-01	k: 145404	n:160000
PJA2   160000 perm   45 sec   (3559 perm/sec)   p_kst 9.087750e-01   p_cons 4.831250e-03   p_joint 1.961250e-02

Joint ci ratio: 7.307121e-02	ci left: 1.603839e-02	ci right 1.726052e-02	k: 2829	n:170000
Cons ci ratio: 1.362279e-01	ci left: 4.516755e-03	ci right 5.182657e-03	k: 823	n:170000
KS ci ratio: 3.015057e-03	ci left: 9.072439e-01	ci right 9.099892e-01	k: 154466	n:170000
PJA2   170000 perm   49 sec   (3503 perm/sec)   p_kst 9.086235e-01   p_cons 4.841176e-03   p_joint 1.664118e-02

Joint ci ratio: 7.106640e-02	ci left: 1.603115e-02	ci right 1.721783e-02	k: 2991	n:180000
Cons ci ratio: 1.318194e-01	ci left: 4.566513e-03	ci right 5.216257e-03	k: 879	n:180000
KS ci ratio: 2.929540e-03	ci left: 9.073153e-01	ci right 9.099827e-01	k: 163558	n:180000
PJA2   180000 perm   52 sec   (3445 perm/sec)   p_kst 9.086556e-01   p_cons 4.883333e-03   p_joint 1.661667e-02

Joint ci ratio: 6.330087e-02	ci left: 1.915756e-02	ci right 2.041504e-02	k: 3758	n:190000
Cons ci ratio: 1.283653e-01	ci left: 4.570581e-03	ci right 5.202565e-03	k: 927	n:190000
KS ci ratio: 2.851724e-03	ci left: 9.073324e-01	ci right 9.099288e-01	k: 172641	n:190000
PJA2   190000 perm   56 sec   (3395 perm/sec)   p_kst 9.086368e-01   p_cons 4.878947e-03   p_joint 1.977895e-02

Joint ci ratio: 5.997238e-02	ci left: 2.028737e-02	ci right 2.154657e-02	k: 4182	n:200000
Cons ci ratio: 1.247844e-01	ci left: 4.603508e-03	ci right 5.220976e-03	k: 981	n:200000
KS ci ratio: 2.780884e-03	ci left: 9.072833e-01	ci right 9.098148e-01	k: 181711	n:200000
PJA2   200000 perm   60 sec   (3341 perm/sec)   p_kst 9.085550e-01   p_cons 4.905000e-03   p_joint 2.091000e-02

Joint ci ratio: 6.205492e-02	ci left: 1.806862e-02	ci right 1.923043e-02	k: 3915	n:210000
Cons ci ratio: 1.224412e-01	ci left: 4.559644e-03	ci right 5.158911e-03	k: 1019	n:210000
KS ci ratio: 2.712661e-03	ci left: 9.073882e-01	ci right 9.098577e-01	k: 190812	n:210000
PJA2   210000 perm   64 sec   (3294 perm/sec)   p_kst 9.086286e-01   p_cons 4.852381e-03   p_joint 1.864286e-02

Joint ci ratio: 6.111943e-02	ci left: 1.779325e-02	ci right 1.891949e-02	k: 4037	n:220000
Cons ci ratio: 1.192104e-01	ci left: 4.599246e-03	ci right 5.186643e-03	k: 1075	n:220000
KS ci ratio: 2.652632e-03	ci left: 9.072693e-01	ci right 9.096836e-01	k: 199866	n:220000
PJA2   220000 perm   68 sec   (3251 perm/sec)   p_kst 9.084818e-01   p_cons 4.886364e-03   p_joint 1.835000e-02

Joint ci ratio: 5.430611e-02	ci left: 2.155025e-02	ci right 2.275749e-02	k: 5094	n:230000
Cons ci ratio: 1.235053e-01	ci left: 4.091453e-03	ci right 4.634198e-03	k: 1002	n:230000
KS ci ratio: 2.594040e-03	ci left: 9.073144e-01	ci right 9.096753e-01	k: 208955	n:230000
PJA2   230000 perm   72 sec   (3208 perm/sec)   p_kst 9.085000e-01   p_cons 4.356522e-03   p_joint 2.214783e-02

Joint ci ratio: 5.043344e-02	ci left: 2.393455e-02	ci right 2.517697e-02	k: 5892	n:240000
Cons ci ratio: 1.205934e-01	ci left: 4.118913e-03	ci right 4.651499e-03	k: 1051	n:240000
KS ci ratio: 2.537575e-03	ci left: 9.074610e-01	ci right 9.097708e-01	k: 218069	n:240000
PJA2   240000 perm   76 sec   (3166 perm/sec)   p_kst 9.086208e-01   p_cons 4.379167e-03   p_joint 2.455000e-02

Joint ci ratio: 5.068833e-02	ci left: 2.277145e-02	ci right 2.395964e-02	k: 5840	n:250000
Cons ci ratio: 1.182020e-01	ci left: 4.121019e-03	ci right 4.642574e-03	k: 1094	n:250000
KS ci ratio: 2.486496e-03	ci left: 9.074717e-01	ci right 9.097348e-01	k: 227152	n:250000
PJA2   250000 perm   80 sec   (3125 perm/sec)   p_kst 9.086080e-01   p_cons 4.376000e-03   p_joint 2.336000e-02

Joint ci ratio: 3.763005e-02	ci left: 3.931096e-02	ci right 4.082239e-02	k: 10416	n:260000
Cons ci ratio: 1.028708e-01	ci left: 5.268039e-03	ci right 5.843068e-03	k: 1443	n:260000
KS ci ratio: 2.439230e-03	ci left: 9.074239e-01	ci right 9.096439e-01	k: 236220	n:260000
PJA2   260000 perm   84 sec   (3086 perm/sec)   p_kst 9.085385e-01   p_cons 5.550000e-03   p_joint 4.006154e-02

Joint ci ratio: 3.683035e-02	ci left: 3.952458e-02	ci right 4.101124e-02	k: 10871	n:270000
Cons ci ratio: 1.006627e-01	ci left: 5.303935e-03	ci right 5.869720e-03	k: 1507	n:270000
KS ci ratio: 2.394505e-03	ci left: 9.073839e-01	ci right 9.095629e-01	k: 245289	n:270000
PJA2   270000 perm   89 sec   (3046 perm/sec)   p_kst 9.084778e-01   p_cons 5.581481e-03   p_joint 4.026296e-02

Joint ci ratio: 3.551949e-02	ci left: 4.094482e-02	ci right 4.242897e-02	k: 11671	n:280000
Cons ci ratio: 9.887586e-02	ci left: 5.306036e-03	ci right 5.861416e-03	k: 1562	n:280000
KS ci ratio: 2.351446e-03	ci left: 9.073973e-01	ci right 9.095371e-01	k: 254372	n:280000
PJA2   280000 perm   93 sec   (3008 perm/sec)   p_kst 9.084714e-01   p_cons 5.578571e-03   p_joint 4.168214e-02

Outputting figure to mutsig2_images.part000000000131/PJA2.4_2163_280000_0.90847_0.0055786_0.041682.png
                gene_name: PJA2
               theta_stop: 0.099 
                    nperm: 280000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.0056 
      ci_cons_bounds_left: 0.0053 
     ci_cons_bounds_right: 0.0059 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.042 

Current progress: 50 percent done.
PIAS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
Cons ci ratio: 3.759650e-02	ci left: 5.109538e-01	ci right 5.306341e-01	k: 5208	n:10000
KS ci ratio: 2.098973e-01	ci left: 3.015459e-02	ci right 3.732038e-02	k: 336	n:10000
PIAS2   10000 perm   2 sec   (5594 perm/sec)   p_kst 3.360000e-02   p_cons 5.208000e-01   p_joint 4.280000e-02

Joint ci ratio: 6.845731e-02	ci left: 1.360071e-01	ci right 1.456976e-01	k: 2816	n:20000
Cons ci ratio: 2.682730e-02	ci left: 5.093472e-01	ci right 5.232480e-01	k: 10326	n:20000
KS ci ratio: 1.484233e-01	ci left: 3.119383e-02	ci right 3.624291e-02	k: 673	n:20000
PIAS2   20000 perm   4 sec   (4850 perm/sec)   p_kst 3.365000e-02   p_cons 5.163000e-01   p_joint 1.408000e-01

Joint ci ratio: 5.973273e-02	ci left: 1.217710e-01	ci right 1.293017e-01	k: 3765	n:30000
Cons ci ratio: 2.196053e-02	ci left: 5.093601e-01	ci right 5.207037e-01	k: 15451	n:30000
KS ci ratio: 1.228321e-01	ci left: 3.081318e-02	ci right 3.487795e-02	k: 984	n:30000
PIAS2   30000 perm   6 sec   (4659 perm/sec)   p_kst 3.280000e-02   p_cons 5.150333e-01   p_joint 1.255000e-01

Joint ci ratio: 4.914559e-02	ci left: 1.338422e-01	ci right 1.406105e-01	k: 5488	n:40000
Cons ci ratio: 1.906657e-02	ci left: 5.088636e-01	ci right 5.186844e-01	k: 20551	n:40000
KS ci ratio: 1.068114e-01	ci left: 3.083247e-02	ci right 3.433582e-02	k: 1302	n:40000
PIAS2   40000 perm   9 sec   (4461 perm/sec)   p_kst 3.255000e-02   p_cons 5.137750e-01   p_joint 1.372000e-01

Joint ci ratio: 5.924823e-02	ci left: 7.810996e-02	ci right 8.289888e-02	k: 4024	n:50000
Cons ci ratio: 1.703860e-02	ci left: 5.098284e-01	ci right 5.186099e-01	k: 25711	n:50000
KS ci ratio: 9.613937e-02	ci left: 3.063081e-02	ci right 3.374382e-02	k: 1608	n:50000
PIAS2   50000 perm   11 sec   (4376 perm/sec)   p_kst 3.216000e-02   p_cons 5.142200e-01   p_joint 8.048000e-02

Outputting figure to mutsig2_images.part000000000131/PIAS2.3_1997_50000_0.03216_0.51422_0.08048.png
                gene_name: PIAS2
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.083 

Current progress: 52 percent done.
PIGG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.142636e-02	ci left: 5.990540e-01	ci right 6.182826e-01	k: 6087	n:10000
Cons ci ratio: 3.533157e-02	ci left: 5.418888e-01	ci right 5.614810e-01	k: 5517	n:10000
KS ci ratio: 4.756368e-02	ci left: 3.947600e-01	ci right 4.140957e-01	k: 4044	n:10000
PIGG   10000 perm   2 sec   (4906 perm/sec)   p_kst 4.044000e-01   p_cons 5.517000e-01   p_joint 6.087000e-01

Outputting figure to mutsig2_images.part000000000131/PIGG.3_3004_10000_0.4044_0.5517_0.6087.png
                gene_name: PIGG
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 54 percent done.
PIGM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.208421e-03	ci left: 9.864298e-01	ci right 9.906784e-01	k: 9887	n:10000
Cons ci ratio: 2.692624e-02	ci left: 6.701514e-01	ci right 6.885440e-01	k: 6794	n:10000
KS ci ratio: 5.290849e-03	ci left: 9.794135e-01	ci right 9.847004e-01	k: 9822	n:10000
PIGM   10000 perm   2 sec   (6012 perm/sec)   p_kst 9.822000e-01   p_cons 6.794000e-01   p_joint 9.887000e-01

Outputting figure to mutsig2_images.part000000000131/PIGM.3_1276_10000_0.9822_0.6794_0.9887.png
                gene_name: PIGM
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 55 percent done.
PIGO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.513206e-02	ci left: 5.446939e-01	ci right 5.642744e-01	k: 5545	n:10000
Cons ci ratio: 1.561441e-02	ci left: 8.562070e-01	ci right 8.697808e-01	k: 8631	n:10000
KS ci ratio: 6.051180e-02	ci left: 2.865679e-01	ci right 3.045513e-01	k: 2955	n:10000
PIGO   10000 perm   2 sec   (4764 perm/sec)   p_kst 2.955000e-01   p_cons 8.631000e-01   p_joint 5.545000e-01

Outputting figure to mutsig2_images.part000000000131/PIGO.3_3310_10000_0.2955_0.8631_0.5545.png
                gene_name: PIGO
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 57 percent done.
PIGT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.679855e-02	ci left: 1.619969e-01	ci right 1.767962e-01	k: 1693	n:10000
Cons ci ratio: 2.313764e-01	ci left: 2.466595e-02	ci right 3.121293e-02	k: 278	n:10000
KS ci ratio: 2.382713e-02	ci left: 7.213844e-01	ci right 7.388814e-01	k: 7302	n:10000
PIGT   10000 perm   2 sec   (5681 perm/sec)   p_kst 7.302000e-01   p_cons 2.780000e-02   p_joint 1.693000e-01

Joint ci ratio: 6.428929e-02	ci left: 1.516872e-01	ci right 1.618128e-01	k: 3134	n:20000
Cons ci ratio: 1.654508e-01	ci left: 2.503753e-02	ci right 2.960129e-02	k: 545	n:20000
KS ci ratio: 1.722308e-02	ci left: 7.151803e-01	ci right 7.276553e-01	k: 14429	n:20000
PIGT   20000 perm   4 sec   (4975 perm/sec)   p_kst 7.214500e-01   p_cons 2.725000e-02   p_joint 1.567000e-01

Joint ci ratio: 5.952505e-02	ci left: 1.225278e-01	ci right 1.300781e-01	k: 3788	n:30000
Cons ci ratio: 1.539028e-01	ci left: 1.953562e-02	ci right 2.282469e-02	k: 634	n:30000
KS ci ratio: 1.408076e-02	ci left: 7.158198e-01	ci right 7.260040e-01	k: 21628	n:30000
PIGT   30000 perm   6 sec   (4813 perm/sec)   p_kst 7.209333e-01   p_cons 2.113333e-02   p_joint 1.262667e-01

Joint ci ratio: 4.990161e-02	ci left: 1.303048e-01	ci right 1.369985e-01	k: 5345	n:40000
Cons ci ratio: 1.334992e-01	ci left: 1.968976e-02	ci right 2.253036e-02	k: 843	n:40000
KS ci ratio: 1.221126e-02	ci left: 7.159483e-01	ci right 7.247697e-01	k: 28815	n:40000
PIGT   40000 perm   9 sec   (4679 perm/sec)   p_kst 7.203750e-01   p_cons 2.107500e-02   p_joint 1.336250e-01

Joint ci ratio: 4.476691e-02	ci left: 1.299755e-01	ci right 1.359472e-01	k: 6647	n:50000
Cons ci ratio: 1.206380e-01	ci left: 1.943109e-02	ci right 2.194499e-02	k: 1033	n:50000
KS ci ratio: 1.092685e-02	ci left: 7.162426e-01	ci right 7.241318e-01	k: 36010	n:50000
PIGT   50000 perm   11 sec   (4567 perm/sec)   p_kst 7.202000e-01   p_cons 2.066000e-02   p_joint 1.329400e-01

Joint ci ratio: 4.495230e-02	ci left: 1.099491e-01	ci right 1.150218e-01	k: 6748	n:60000
Cons ci ratio: 1.093556e-01	ci left: 1.981893e-02	ci right 2.212773e-02	k: 1257	n:60000
KS ci ratio: 9.992552e-03	ci left: 7.158697e-01	ci right 7.230757e-01	k: 43169	n:60000
PIGT   60000 perm   13 sec   (4451 perm/sec)   p_kst 7.194833e-01   p_cons 2.095000e-02   p_joint 1.124667e-01

Joint ci ratio: 3.446602e-02	ci left: 1.532766e-01	ci right 1.586663e-01	k: 10917	n:70000
Cons ci ratio: 1.013378e-01	ci left: 1.986698e-02	ci right 2.200157e-02	k: 1464	n:70000
KS ci ratio: 9.284007e-03	ci left: 7.147078e-01	ci right 7.213884e-01	k: 50264	n:70000
PIGT   70000 perm   16 sec   (4360 perm/sec)   p_kst 7.180571e-01   p_cons 2.091429e-02   p_joint 1.559571e-01

Joint ci ratio: 3.313301e-02	ci left: 1.464397e-01	ci right 1.513858e-01	k: 11912	n:80000
Cons ci ratio: 9.417107e-02	ci left: 2.020073e-02	ci right 2.220920e-02	k: 1695	n:80000
KS ci ratio: 8.676779e-03	ci left: 7.152817e-01	ci right 7.215275e-01	k: 57473	n:80000
PIGT   80000 perm   19 sec   (4278 perm/sec)   p_kst 7.184125e-01   p_cons 2.118750e-02   p_joint 1.489000e-01

Outputting figure to mutsig2_images.part000000000131/PIGT.3_1785_80000_0.71841_0.021188_0.1489.png
                gene_name: PIGT
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 59 percent done.
PIK3CD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.454048e-03	ci left: 9.782366e-01	ci right 9.836781e-01	k: 9811	n:10000
Cons ci ratio: 2.829633e-02	ci left: 6.480036e-01	ci right 6.667046e-01	k: 6574	n:10000
KS ci ratio: 1.085878e-02	ci left: 9.235838e-01	ci right 9.337648e-01	k: 9288	n:10000
PIK3CD   10000 perm   2 sec   (5395 perm/sec)   p_kst 9.288000e-01   p_cons 6.574000e-01   p_joint 9.811000e-01

Outputting figure to mutsig2_images.part000000000131/PIK3CD.3_3223_10000_0.9288_0.6574_0.9811.png
                gene_name: PIK3CD
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 61 percent done.
PILRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.249459e-02	ci left: 3.484968e-01	ci right 3.673860e-01	k: 3579	n:10000
Cons ci ratio: 1.487317e-02	ci left: 8.675412e-01	ci right 8.806401e-01	k: 8742	n:10000
KS ci ratio: 6.470164e-02	ci left: 2.597333e-01	ci right 2.772017e-01	k: 2684	n:10000
PILRA   10000 perm   2 sec   (6606 perm/sec)   p_kst 2.684000e-01   p_cons 8.742000e-01   p_joint 3.579000e-01

Outputting figure to mutsig2_images.part000000000131/PILRA.3_940_10000_0.2684_0.8742_0.3579.png
                gene_name: PILRA
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 62 percent done.
PINK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.782131e-02	ci left: 3.921708e-01	ci right 4.114864e-01	k: 4018	n:10000
Cons ci ratio: 3.103201e-02	ci left: 6.050792e-01	ci right 6.242539e-01	k: 6147	n:10000
KS ci ratio: 7.291787e-02	ci left: 2.159584e-01	ci right 2.324025e-01	k: 2241	n:10000
PINK1   10000 perm   2 sec   (5512 perm/sec)   p_kst 2.241000e-01   p_cons 6.147000e-01   p_joint 4.018000e-01

Outputting figure to mutsig2_images.part000000000131/PINK1.3_1778_10000_0.2241_0.6147_0.4018.png
                gene_name: PINK1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 64 percent done.
PINX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.449229e-02	ci left: 8.732655e-01	ci right 8.861124e-01	k: 8798	n:10000
Cons ci ratio: 1.239923e-03	ci left: 9.982922e-01	ci right 9.995884e-01	k: 9991	n:10000
KS ci ratio: 4.859582e-02	ci left: 3.845045e-01	ci right 4.037572e-01	k: 3941	n:10000
PINX1   10000 perm   2 sec   (5770 perm/sec)   p_kst 3.941000e-01   p_cons 9.991000e-01   p_joint 8.798000e-01

Outputting figure to mutsig2_images.part000000000131/PINX1.3_1015_10000_0.3941_0.9991_0.8798.png
                gene_name: PINX1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 66 percent done.
PIP4K2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.469983e-02	ci left: 1.688761e-01	ci right 1.839129e-01	k: 1763	n:10000
Cons ci ratio: 7.501285e-02	ci left: 2.063903e-01	ci right 2.225764e-01	k: 2144	n:10000
KS ci ratio: 9.568773e-02	ci left: 1.367812e-01	ci right 1.506270e-01	k: 1436	n:10000
PIP4K2C   10000 perm   2 sec   (6496 perm/sec)   p_kst 1.436000e-01   p_cons 2.144000e-01   p_joint 1.763000e-01

Outputting figure to mutsig2_images.part000000000131/PIP4K2C.3_1306_10000_0.1436_0.2144_0.1763.png
                gene_name: PIP4K2C
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 68 percent done.
PIP5K1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.960380e-02	ci left: 4.849534e-01	ci right 5.046496e-01	k: 4948	n:10000
KS ci ratio: 1.770450e-02	ci left: 8.231021e-01	ci right 8.379049e-01	k: 8306	n:10000
PIP5K1A   10000 perm   2 sec   (5598 perm/sec)   p_kst 8.306000e-01   p_cons 4.948000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIP5K1A.3_1753_10000_0.8306_0.4948_1.png
                gene_name: PIP5K1A
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
PICALM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.786111e-02	ci left: 3.917725e-01	ci right 4.110850e-01	k: 4014	n:10000
KS ci ratio: 1.033792e-01	ci left: 1.191644e-01	ci right 1.322545e-01	k: 1256	n:10000
PICALM   10000 perm   2 sec   (6055 perm/sec)   p_kst 1.256000e-01   p_cons 4.014000e-01   p_joint 1

Joint ci ratio: 1.032627e-02	ci left: 8.735365e-01	ci right 8.826533e-01	k: 17563	n:20000
Cons ci ratio: 3.379690e-02	ci left: 3.952943e-01	ci right 4.089342e-01	k: 8042	n:20000
KS ci ratio: 7.325148e-02	ci left: 1.206431e-01	ci right 1.298661e-01	k: 2504	n:20000
PICALM   20000 perm   4 sec   (5350 perm/sec)   p_kst 1.252000e-01   p_cons 4.021000e-01   p_joint 8.781500e-01

Outputting figure to mutsig2_images.part000000000131/PICALM.2_2067_20000_0.1252_0.4021_0.87815.png
                gene_name: PICALM
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 71 percent done.
PIGB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.799496e-01	ci left: 4.121131e-02	ci right 4.945618e-02	k: 452	n:10000
Cons ci ratio: 2.225082e-01	ci left: 2.674401e-02	ci right 3.353336e-02	k: 300	n:10000
KS ci ratio: 4.242237e-02	ci left: 4.506935e-01	ci right 4.703295e-01	k: 4605	n:10000
PIGB   10000 perm   2 sec   (6064 perm/sec)   p_kst 4.605000e-01   p_cons 3.000000e-02   p_joint 4.520000e-02

Joint ci ratio: 8.967923e-02	ci left: 8.327621e-02	ci right 9.114429e-02	k: 1743	n:20000
Cons ci ratio: 1.538196e-01	ci left: 2.902635e-02	ci right 3.391111e-02	k: 628	n:20000
KS ci ratio: 3.005402e-02	ci left: 4.526744e-01	ci right 4.665373e-01	k: 9192	n:20000
PIGB   20000 perm   4 sec   (5345 perm/sec)   p_kst 4.596000e-01   p_cons 3.140000e-02   p_joint 8.715000e-02

Joint ci ratio: 6.280368e-02	ci left: 1.113121e-01	ci right 1.185627e-01	k: 3447	n:30000
Cons ci ratio: 1.244748e-01	ci left: 3.000484e-02	ci right 3.401980e-02	k: 959	n:30000
KS ci ratio: 2.448049e-02	ci left: 4.551468e-01	ci right 4.664607e-01	k: 13824	n:30000
PIGB   30000 perm   6 sec   (5068 perm/sec)   p_kst 4.608000e-01   p_cons 3.196667e-02   p_joint 1.149000e-01

Joint ci ratio: 8.743049e-02	ci left: 4.575415e-02	ci right 4.996180e-02	k: 1913	n:40000
Cons ci ratio: 1.077118e-01	ci left: 3.032112e-02	ci right 3.379725e-02	k: 1281	n:40000
KS ci ratio: 2.119569e-02	ci left: 4.560306e-01	ci right 4.658251e-01	k: 18437	n:40000
PIGB   40000 perm   8 sec   (4889 perm/sec)   p_kst 4.609250e-01   p_cons 3.202500e-02   p_joint 4.782500e-02

Joint ci ratio: 4.654358e-02	ci left: 1.213408e-01	ci right 1.271429e-01	k: 6211	n:50000
Cons ci ratio: 8.923521e-02	ci left: 3.549937e-02	ci right 3.883464e-02	k: 1857	n:50000
KS ci ratio: 1.899425e-02	ci left: 4.556039e-01	ci right 4.643608e-01	k: 22999	n:50000
PIGB   50000 perm   11 sec   (4751 perm/sec)   p_kst 4.599800e-01   p_cons 3.714000e-02   p_joint 1.242200e-01

Outputting figure to mutsig2_images.part000000000131/PIGB.2_1713_50000_0.45998_0.03714_0.12422.png
                gene_name: PIGB
               theta_stop: 0.089 
                    nperm: 50000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 73 percent done.
PIGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.090642e-02	ci left: 2.838926e-01	ci right 3.018282e-01	k: 2928	n:10000
Cons ci ratio: 8.552514e-02	ci left: 1.661239e-01	ci right 1.810667e-01	k: 1735	n:10000
KS ci ratio: 1.467656e-02	ci left: 8.705050e-01	ci right 8.834745e-01	k: 8771	n:10000
PIGN   10000 perm   2 sec   (5276 perm/sec)   p_kst 8.771000e-01   p_cons 1.735000e-01   p_joint 2.928000e-01

Outputting figure to mutsig2_images.part000000000131/PIGN.2_2908_10000_0.8771_0.1735_0.2928.png
                gene_name: PIGN
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 75 percent done.
PIGS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.492827e-01	ci left: 5.966639e-02	ci right 6.938918e-02	k: 644	n:10000
Cons ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
KS ci ratio: 3.289058e-02	ci left: 5.770748e-01	ci right 5.964746e-01	k: 5868	n:10000
PIGS   10000 perm   2 sec   (5979 perm/sec)   p_kst 5.868000e-01   p_cons 6.190000e-02   p_joint 6.440000e-02

Joint ci ratio: 5.704570e-02	ci left: 1.855229e-01	ci right 1.964671e-01	k: 3819	n:20000
Cons ci ratio: 1.008760e-01	ci left: 6.664808e-02	ci right 7.377748e-02	k: 1403	n:20000
KS ci ratio: 2.338339e-02	ci left: 5.773326e-01	ci right 5.910429e-01	k: 11684	n:20000
PIGS   20000 perm   4 sec   (5289 perm/sec)   p_kst 5.842000e-01   p_cons 7.015000e-02   p_joint 1.909500e-01

Joint ci ratio: 5.891266e-02	ci left: 1.247985e-01	ci right 1.324070e-01	k: 3857	n:30000
Cons ci ratio: 8.217684e-02	ci left: 6.759561e-02	ci right 7.342123e-02	k: 2114	n:30000
KS ci ratio: 1.921359e-02	ci left: 5.755261e-01	ci right 5.867249e-01	k: 17434	n:30000
PIGS   30000 perm   6 sec   (5046 perm/sec)   p_kst 5.811333e-01   p_cons 7.046667e-02   p_joint 1.285667e-01

Outputting figure to mutsig2_images.part000000000131/PIGS.2_1716_30000_0.58113_0.070467_0.12857.png
                gene_name: PIGS
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 77 percent done.
PIGV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.653384e-02	ci left: 8.418309e-01	ci right 8.559652e-01	k: 8490	n:10000
Cons ci ratio: 1.970476e-02	ci left: 7.902989e-01	ci right 8.061270e-01	k: 7983	n:10000
KS ci ratio: 3.326494e-02	ci left: 5.715581e-01	ci right 5.909945e-01	k: 5813	n:10000
PIGV   10000 perm   2 sec   (6289 perm/sec)   p_kst 5.813000e-01   p_cons 7.983000e-01   p_joint 8.490000e-01

Outputting figure to mutsig2_images.part000000000131/PIGV.2_1494_10000_0.5813_0.7983_0.849.png
                gene_name: PIGV
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 79 percent done.
PIH1D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.740679e-02	ci left: 3.087773e-01	ci right 3.271288e-01	k: 3179	n:10000
KS ci ratio: 4.145358e-02	ci left: 4.621749e-01	ci right 4.818414e-01	k: 4720	n:10000
PIH1D2   10000 perm   2 sec   (6626 perm/sec)   p_kst 4.720000e-01   p_cons 3.179000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIH1D2.2_1026_10000_0.472_0.3179_1.png
                gene_name: PIH1D2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
PIK3CB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.743868e-01	ci left: 1.725330e-02	ci right 2.283124e-02	k: 199	n:10000
Cons ci ratio: 1.321220e-01	ci left: 7.553121e-02	ci right 8.631442e-02	k: 808	n:10000
KS ci ratio: 2.729973e-01	ci left: 1.743979e-02	ci right 2.304459e-02	k: 201	n:10000
PIK3CB   10000 perm   2 sec   (5038 perm/sec)   p_kst 2.010000e-02   p_cons 8.080000e-02   p_joint 1.990000e-02

Joint ci ratio: 1.291237e-01	ci left: 4.119905e-02	ci right 4.693445e-02	k: 880	n:20000
Cons ci ratio: 9.261904e-02	ci left: 7.838034e-02	ci right 8.604164e-02	k: 1643	n:20000
KS ci ratio: 1.906485e-01	ci left: 1.872403e-02	ci right 2.271702e-02	k: 413	n:20000
PIK3CB   20000 perm   4 sec   (4514 perm/sec)   p_kst 2.065000e-02   p_cons 8.215000e-02   p_joint 4.400000e-02

Joint ci ratio: 1.513653e-01	ci left: 2.020941e-02	ci right 2.355075e-02	k: 655	n:30000
Cons ci ratio: 7.497950e-02	ci left: 8.036063e-02	ci right 8.665364e-02	k: 2504	n:30000
KS ci ratio: 1.578862e-01	ci left: 1.854184e-02	ci right 2.175204e-02	k: 603	n:30000
PIK3CB   30000 perm   7 sec   (4319 perm/sec)   p_kst 2.010000e-02   p_cons 8.346667e-02   p_joint 2.183333e-02

Joint ci ratio: 9.395801e-02	ci left: 3.973739e-02	ci right 4.367950e-02	k: 1667	n:40000
Cons ci ratio: 6.425456e-02	ci left: 8.238324e-02	ci right 8.787716e-02	k: 3404	n:40000
KS ci ratio: 1.342322e-01	ci left: 1.947215e-02	ci right 2.229801e-02	k: 834	n:40000
PIK3CB   40000 perm   10 sec   (4146 perm/sec)   p_kst 2.085000e-02   p_cons 8.510000e-02   p_joint 4.167500e-02

Joint ci ratio: 8.376666e-02	ci left: 4.019963e-02	ci right 4.373380e-02	k: 2097	n:50000
Cons ci ratio: 5.726733e-02	ci left: 8.322106e-02	ci right 8.814717e-02	k: 4283	n:50000
KS ci ratio: 1.205190e-01	ci left: 1.946991e-02	ci right 2.198617e-02	k: 1035	n:50000
PIK3CB   50000 perm   12 sec   (4017 perm/sec)   p_kst 2.070000e-02   p_cons 8.566000e-02   p_joint 4.194000e-02

Joint ci ratio: 7.663682e-02	ci left: 4.017978e-02	ci right 4.339806e-02	k: 2506	n:60000
Cons ci ratio: 5.237699e-02	ci left: 8.314259e-02	ci right 8.763094e-02	k: 5122	n:60000
KS ci ratio: 1.101180e-01	ci left: 1.954322e-02	ci right 2.183680e-02	k: 1240	n:60000
PIK3CB   60000 perm   15 sec   (3948 perm/sec)   p_kst 2.066667e-02   p_cons 8.536667e-02   p_joint 4.176667e-02

Joint ci ratio: 9.631984e-02	ci left: 2.199982e-02	ci right 2.423995e-02	k: 1617	n:70000
Cons ci ratio: 4.524624e-02	ci left: 9.464746e-02	ci right 9.904317e-02	k: 6778	n:70000
KS ci ratio: 1.021599e-01	ci left: 1.954660e-02	ci right 2.166483e-02	k: 1441	n:70000
PIK3CB   70000 perm   18 sec   (3885 perm/sec)   p_kst 2.058571e-02   p_cons 9.682857e-02   p_joint 2.310000e-02

Joint ci ratio: 7.394371e-02	ci left: 3.268118e-02	ci right 3.520276e-02	k: 2714	n:80000
Cons ci ratio: 4.230717e-02	ci left: 9.485849e-02	ci right 9.897079e-02	k: 7752	n:80000
KS ci ratio: 9.535536e-02	ci left: 1.970013e-02	ci right 2.168484e-02	k: 1654	n:80000
PIK3CB   80000 perm   21 sec   (3828 perm/sec)   p_kst 2.067500e-02   p_cons 9.690000e-02   p_joint 3.392500e-02

Outputting figure to mutsig2_images.part000000000131/PIK3CB.2_3301_80000_0.020675_0.0969_0.033925.png
                gene_name: PIK3CB
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.035 

Current progress: 82 percent done.
PILRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.386945e-02	ci left: 7.206775e-01	ci right 7.381887e-01	k: 7295	n:10000
KS ci ratio: 4.758343e-02	ci left: 3.945608e-01	ci right 4.138950e-01	k: 4042	n:10000
PILRB   10000 perm   1 sec   (6921 perm/sec)   p_kst 4.042000e-01   p_cons 7.295000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PILRB.2_700_10000_0.4042_0.7295_1.png
                gene_name: PILRB
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
PION
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.784120e-02	ci left: 3.919717e-01	ci right 4.112857e-01	k: 4016	n:10000
Cons ci ratio: 4.988129e-02	ci left: 3.721640e-01	ci right 3.913049e-01	k: 3817	n:10000
KS ci ratio: 5.525475e-02	ci left: 3.254505e-01	ci right 3.440459e-01	k: 3347	n:10000
PION   10000 perm   2 sec   (5449 perm/sec)   p_kst 3.347000e-01   p_cons 3.817000e-01   p_joint 4.016000e-01

Outputting figure to mutsig2_images.part000000000131/PION.2_2689_10000_0.3347_0.3817_0.4016.png
                gene_name: PION
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 86 percent done.
PIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
Cons ci ratio: 5.431310e-02	ci left: 3.330967e-01	ci right 3.517951e-01	k: 3424	n:10000
KS ci ratio: 1.255651e-01	ci left: 8.319799e-02	ci right 9.444288e-02	k: 887	n:10000
PIP   10000 perm   2 sec   (6445 perm/sec)   p_kst 8.870000e-02   p_cons 3.424000e-01   p_joint 4.660000e-02

Joint ci ratio: 6.190544e-02	ci left: 1.618052e-01	ci right 1.721918e-01	k: 3339	n:20000
Cons ci ratio: 3.820982e-02	ci left: 3.381609e-01	ci right 3.513842e-01	k: 6895	n:20000
KS ci ratio: 8.920376e-02	ci left: 8.410890e-02	ci right 9.201134e-02	k: 1760	n:20000
PIP   20000 perm   3 sec   (5828 perm/sec)   p_kst 8.800000e-02   p_cons 3.447500e-01   p_joint 1.669500e-01

Outputting figure to mutsig2_images.part000000000131/PIP.2_457_20000_0.088_0.34475_0.16695.png
                gene_name: PIP
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 88 percent done.
PIP4K2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.172054e-02	ci left: 9.124500e-01	ci right 9.233051e-01	k: 9180	n:10000
KS ci ratio: 2.536816e-02	ci left: 6.957512e-01	ci right 7.137293e-01	k: 7048	n:10000
PIP4K2A   10000 perm   2 sec   (5800 perm/sec)   p_kst 7.048000e-01   p_cons 9.180000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000131/PIP4K2A.2_1261_10000_0.7048_0.918_1.png
                gene_name: PIP4K2A
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
PIP4K2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.254102e-01	ci left: 8.339227e-02	ci right 9.464849e-02	k: 889	n:10000
Cons ci ratio: 2.191527e-01	ci left: 2.759554e-02	ci right 3.448123e-02	k: 309	n:10000
KS ci ratio: 1.872701e-02	ci left: 8.064357e-01	ci right 8.217809e-01	k: 8142	n:10000
PIP4K2B   10000 perm   2 sec   (6589 perm/sec)   p_kst 8.142000e-01   p_cons 3.090000e-02   p_joint 8.890000e-02

Joint ci ratio: 7.963807e-02	ci left: 1.037306e-01	ci right 1.123837e-01	k: 2160	n:20000
Cons ci ratio: 1.543269e-01	ci left: 2.883384e-02	ci right 3.370369e-02	k: 624	n:20000
KS ci ratio: 1.346866e-02	ci left: 8.034824e-01	ci right 8.144276e-01	k: 16180	n:20000
PIP4K2B   20000 perm   3 sec   (5759 perm/sec)   p_kst 8.090000e-01   p_cons 3.120000e-02   p_joint 1.080000e-01

Joint ci ratio: 6.508654e-02	ci left: 1.043449e-01	ci right 1.113979e-01	k: 3235	n:30000
Cons ci ratio: 1.255598e-01	ci left: 2.948769e-02	ci right 3.347039e-02	k: 943	n:30000
KS ci ratio: 1.097567e-02	ci left: 8.051106e-01	ci right 8.140293e-01	k: 24288	n:30000
PIP4K2B   30000 perm   6 sec   (5436 perm/sec)   p_kst 8.096000e-01   p_cons 3.143333e-02   p_joint 1.078333e-01

Joint ci ratio: 1.002733e-01	ci left: 3.495178e-02	ci right 3.866586e-02	k: 1471	n:40000
Cons ci ratio: 1.086790e-01	ci left: 2.978556e-02	ci right 3.323290e-02	k: 1259	n:40000
KS ci ratio: 9.569086e-03	ci left: 8.036267e-01	ci right 8.113786e-01	k: 32301	n:40000
PIP4K2B   40000 perm   8 sec   (5245 perm/sec)   p_kst 8.075250e-01   p_cons 3.147500e-02   p_joint 3.677500e-02

Joint ci ratio: 9.629407e-02	ci left: 3.053314e-02	ci right 3.364150e-02	k: 1603	n:50000
Cons ci ratio: 9.629407e-02	ci left: 3.053314e-02	ci right 3.364150e-02	k: 1603	n:50000
KS ci ratio: 8.565024e-03	ci left: 8.038150e-01	ci right 8.107493e-01	k: 40365	n:50000
PIP4K2B   50000 perm   10 sec   (5086 perm/sec)   p_kst 8.073000e-01   p_cons 3.206000e-02   p_joint 3.206000e-02

Outputting figure to mutsig2_images.part000000000131/PIP4K2B.2_1291_50000_0.8073_0.03206_0.03206.png
                gene_name: PIP4K2B
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 91 percent done.
PIP5K1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.494614e-02	ci left: 2.066861e-01	ci right 2.228804e-01	k: 2147	n:10000
Cons ci ratio: 6.025129e-02	ci left: 2.883517e-01	ci right 3.063665e-01	k: 2973	n:10000
KS ci ratio: 8.327051e-02	ci left: 1.737925e-01	ci right 1.889935e-01	k: 1813	n:10000
PIP5K1B   10000 perm   2 sec   (5999 perm/sec)   p_kst 1.813000e-01   p_cons 2.973000e-01   p_joint 2.147000e-01

Outputting figure to mutsig2_images.part000000000131/PIP5K1B.2_1675_10000_0.1813_0.2973_0.2147.png
                gene_name: PIP5K1B
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 93 percent done.
PISD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.968229e-02	ci left: 1.531589e-01	ci right 1.676395e-01	k: 1603	n:10000
Cons ci ratio: 1.311543e-01	ci left: 7.659787e-02	ci right 8.744709e-02	k: 819	n:10000
KS ci ratio: 5.586816e-02	ci left: 3.205861e-01	ci right 3.391131e-01	k: 3298	n:10000
PISD   10000 perm   2 sec   (6651 perm/sec)   p_kst 3.298000e-01   p_cons 8.190000e-02   p_joint 1.603000e-01

Joint ci ratio: 5.098270e-02	ci left: 2.222995e-01	ci right 2.339796e-01	k: 4562	n:20000
Cons ci ratio: 9.171034e-02	ci left: 7.984868e-02	ci right 8.757286e-02	k: 1673	n:20000
KS ci ratio: 3.916768e-02	ci left: 3.271148e-01	ci right 3.402336e-01	k: 6673	n:20000
PISD   20000 perm   3 sec   (5808 perm/sec)   p_kst 3.336500e-01   p_cons 8.365000e-02   p_joint 2.281000e-01

Outputting figure to mutsig2_images.part000000000131/PISD.2_1156_20000_0.33365_0.08365_0.2281.png
                gene_name: PISD
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 95 percent done.
PITPNB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.397226e-02	ci left: 7.189609e-01	ci right 7.365063e-01	k: 7278	n:10000
Cons ci ratio: 2.662392e-02	ci left: 6.750875e-01	ci right 6.934051e-01	k: 6843	n:10000
KS ci ratio: 3.097963e-02	ci left: 6.058827e-01	ci right 6.250500e-01	k: 6155	n:10000
PITPNB   10000 perm   2 sec   (6489 perm/sec)   p_kst 6.155000e-01   p_cons 6.843000e-01   p_joint 7.278000e-01

Outputting figure to mutsig2_images.part000000000131/PITPNB.2_860_10000_0.6155_0.6843_0.7278.png
                gene_name: PITPNB
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 96 percent done.
PITPNC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.396524e-02	ci left: 3.359772e-01	ci right 3.547130e-01	k: 3453	n:10000
Cons ci ratio: 1.207744e-01	ci left: 8.951617e-02	ci right 1.011208e-01	k: 952	n:10000
KS ci ratio: 2.365186e-02	ci left: 7.243132e-01	ci right 7.417508e-01	k: 7331	n:10000
PITPNC1   10000 perm   2 sec   (6541 perm/sec)   p_kst 7.331000e-01   p_cons 9.520000e-02   p_joint 3.453000e-01

Joint ci ratio: 6.777275e-02	ci left: 1.384219e-01	ci right 1.481820e-01	k: 2865	n:20000
Cons ci ratio: 8.765693e-02	ci left: 8.690165e-02	ci right 9.491774e-02	k: 1817	n:20000
KS ci ratio: 1.670329e-02	ci left: 7.274146e-01	ci right 7.397174e-01	k: 14672	n:20000
PITPNC1   20000 perm   3 sec   (5722 perm/sec)   p_kst 7.336000e-01   p_cons 9.085000e-02   p_joint 1.432500e-01

Outputting figure to mutsig2_images.part000000000131/PITPNC1.2_1158_20000_0.7336_0.09085_0.14325.png
                gene_name: PITPNC1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 98 percent done.
PITX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.891494e-03	ci left: 9.749320e-01	ci right 9.807851e-01	k: 9780	n:10000
Cons ci ratio: 2.363978e-02	ci left: 7.245152e-01	ci right 7.419487e-01	k: 7333	n:10000
KS ci ratio: 1.282976e-02	ci left: 8.973393e-01	ci right 9.090246e-01	k: 9033	n:10000
PITX2   10000 perm   2 sec   (6278 perm/sec)   p_kst 9.033000e-01   p_cons 7.333000e-01   p_joint 9.780000e-01

Outputting figure to mutsig2_images.part000000000131/PITX2.2_1179_10000_0.9033_0.7333_0.978.png
                gene_name: PITX2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000131
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 131 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1705>
Subject: Job 9894081: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1705>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000132> was used as the working directory.
Started at Sat Oct  6 00:24:37 2012
Results reported at Sat Oct  6 00:38:08 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000132.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000132.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 132  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000132.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    837.19 sec.
    Max Memory :      3568 MB
    Max Swap   :      5902 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
132
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 132
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 132: processing genes 11811 - 11900
Calculating significance of each gene.
Using projection method.
11811	PKD2	2.332790e-01
11812	PKD2L1	1.083531e-01
11813	PKD2L2	1.326917e-01
11814	PKDCC	6.737107e-01
11815	PKDREJ	7.230286e-01
11816	PKHD1	7.365933e-04
11817	PKHD1L1	6.144283e-01
11818	PKIA	7.683368e-02
11819	PKIB	1.312284e-01
11820	PKIG	1
11821	PKLR	1
11822	PKM2	8.169635e-01
In gene PKMYT1 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 1207    n = 1	mu =   8.55e-07
11823	PKMYT1	6.363784e-01
11824	PKN1	8.578933e-01
11825	PKN2	3.686039e-01
11826	PKN3	9.235918e-01
11827	PKNOX1	1
11828	PKNOX2	4.102284e-01
11829	PKP1	9.483576e-01
11830	PKP2	3.945237e-01
11831	PKP3	1
11832	PKP4	8.939113e-01
11833	PLA1A	3.559176e-01
11834	PLA2G10	1
11835	PLA2G12A	1
11836	PLA2G12B	1
11837	PLA2G15	4.373681e-01
11838	PLA2G16	1
11839	PLA2G1B	5.249741e-01
11840	PLA2G2A	1
11841	PLA2G2C	1
11842	PLA2G2D	1
11843	PLA2G2E	1
11844	PLA2G2F	5.912301e-01
11845	PLA2G3	1
11846	PLA2G4A	1.240528e-01
11847	PLA2G4B	1
11848	PLA2G4C	2.650823e-02
11849	PLA2G4D	5.843941e-01
11850	PLA2G4E	9.936703e-01
11851	PLA2G4F	8.124211e-01
11852	PLA2G5	1
11853	PLA2G6	6.338675e-01
11854	PLA2G7	2.224037e-01
11855	PLA2R1	2.418576e-01
11856	PLAA	5.775442e-01
11857	PLAC1	4.748751e-02
11858	PLAC1L	1
11859	PLAC4	2.305224e-01
11860	PLAC8	1.148689e-01
11861	PLAC8L1	3.866457e-01
11862	PLAC9	1
11863	PLAG1	1.298351e-01
11864	PLAGL1	2.032779e-01
11865	PLAGL2	1
11866	PLAT	2.894549e-01
11867	PLAU	4.610895e-01
11868	PLAUR	2.211952e-01
11869	PLB1	8.803616e-01
11870	PLBD1	9.279752e-01
11871	PLBD2	6.792931e-01
11872	PLCB1	1.670648e-01
11873	PLCB2	9.499215e-01
11874	PLCB3	8.290057e-01
11875	PLCB4	1.942803e-01
11876	PLCD1	4.462368e-01
11877	PLCD3	7.932612e-01
11878	PLCD4	7.426388e-01
11879	PLCE1	9.461384e-01
11880	PLCG1	9.290980e-01
11881	PLCG2	3.075969e-01
11882	PLCH1	7.173923e-02
11883	PLCH2	9.896171e-01
11884	PLCL1	2.794482e-01
11885	PLCL2	3.064440e-01
11886	PLCXD2	6.578640e-02
11887	PLCXD3	1.630768e-01
11888	PLCZ1	3.937205e-01
11889	PLD1	1.729778e-01
In gene PLD2 the following bins exceed PROBCAP:
    READ-AG-A01L	categ 6	N = 2898    n = 1	mu =   3.23e-07
11890	PLD2	8.266553e-01
11891	PLD3	2.976966e-01
11892	PLD4	6.120503e-01
11893	PLD5	6.994643e-02
11894	PLD6	1
11895	PLDN	5.853459e-01
11896	PLEC	1.000000e+00
11897	PLEK	6.663252e-03
11898	PLEK2	8.463696e-01
11899	PLEKHA1	3.553902e-01
11900	PLEKHA2	3.718977e-01
Done

Running MutSig 2:
Scatter job 132: processing genes 11811 - 11900
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PKHD1
Processing conservation and coverage...
79% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.640311e-02	ci left: 3.164175e-01	ci right 3.348842e-01	k: 3256	n:10000
Cons ci ratio: 8.178706e-02	ci left: 1.791047e-01	ci right 1.944782e-01	k: 1867	n:10000
KS ci ratio: 4.105657e-02	ci left: 4.669687e-01	ci right 4.866448e-01	k: 4768	n:10000
PKHD1   10000 perm   4 sec   (2316 perm/sec)   p_kst 4.768000e-01   p_cons 1.867000e-01   p_joint 3.256000e-01

Outputting figure to mutsig2_images.part000000000132/PKHD1.47_12528_10000_0.4768_0.1867_0.3256.png
                gene_name: PKHD1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 2 percent done.
PKHD1L1
Processing conservation and coverage...
76% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.192151e-02	ci left: 2.771565e-01	ci right 2.949683e-01	k: 2860	n:10000
Cons ci ratio: 7.735548e-03	ci left: 9.586940e-01	ci right 9.662336e-01	k: 9626	n:10000
KS ci ratio: 9.345829e-02	ci left: 1.425640e-01	ci right 1.566408e-01	k: 1495	n:10000
PKHD1L1   10000 perm   4 sec   (2532 perm/sec)   p_kst 1.495000e-01   p_cons 9.626000e-01   p_joint 2.860000e-01

Outputting figure to mutsig2_images.part000000000132/PKHD1L1.27_13044_10000_0.1495_0.9626_0.286.png
                gene_name: PKHD1L1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 3 percent done.
PLCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.321256e-02	ci left: 2.145771e-01	ci right 2.309847e-01	k: 2227	n:10000
Cons ci ratio: 1.277074e-01	ci left: 8.057611e-02	ci right 9.166638e-02	k: 860	n:10000
KS ci ratio: 2.980685e-02	ci left: 6.240687e-01	ci right 6.430535e-01	k: 6336	n:10000
PLCH1   10000 perm   3 sec   (3937 perm/sec)   p_kst 6.336000e-01   p_cons 8.600000e-02   p_joint 2.227000e-01

Joint ci ratio: 5.063061e-02	ci left: 2.247273e-01	ci right 2.364511e-01	k: 4611	n:20000
Cons ci ratio: 8.996207e-02	ci left: 8.278644e-02	ci right 9.063420e-02	k: 1733	n:20000
KS ci ratio: 2.101183e-02	ci left: 6.283338e-01	ci right 6.417269e-01	k: 12701	n:20000
PLCH1   20000 perm   5 sec   (3716 perm/sec)   p_kst 6.350500e-01   p_cons 8.665000e-02   p_joint 2.305500e-01

Outputting figure to mutsig2_images.part000000000132/PLCH1.17_5189_20000_0.63505_0.08665_0.23055.png
                gene_name: PLCH1
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 5 percent done.
PKDREJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.990851e-02	ci left: 1.266956e-01	ci right 1.401187e-01	k: 1333	n:10000
Cons ci ratio: 2.976835e-02	ci left: 6.246718e-01	ci right 6.436500e-01	k: 6342	n:10000
KS ci ratio: 1.827128e-01	ci left: 3.996794e-02	ci right 4.810038e-02	k: 439	n:10000
PKDREJ   10000 perm   3 sec   (3367 perm/sec)   p_kst 4.390000e-02   p_cons 6.342000e-01   p_joint 1.333000e-01

Joint ci ratio: 1.016175e-01	ci left: 6.572047e-02	ci right 7.280538e-02	k: 1384	n:20000
Cons ci ratio: 2.124814e-02	ci left: 6.231147e-01	ci right 6.365475e-01	k: 12597	n:20000
KS ci ratio: 1.269532e-01	ci left: 4.260458e-02	ci right 4.842848e-02	k: 909	n:20000
PKDREJ   20000 perm   6 sec   (3209 perm/sec)   p_kst 4.545000e-02   p_cons 6.298500e-01   p_joint 6.920000e-02

Joint ci ratio: 6.967708e-02	ci left: 9.209840e-02	ci right 9.878018e-02	k: 2862	n:30000
Cons ci ratio: 1.783193e-02	ci left: 6.114380e-01	ci right 6.224727e-01	k: 18509	n:30000
KS ci ratio: 1.047066e-01	ci left: 4.229167e-02	ci right 4.699703e-02	k: 1338	n:30000
PKDREJ   30000 perm   10 sec   (3093 perm/sec)   p_kst 4.460000e-02   p_cons 6.169667e-01   p_joint 9.540000e-02

Joint ci ratio: 6.477579e-02	ci left: 8.115163e-02	ci right 8.660896e-02	k: 3354	n:40000
Cons ci ratio: 1.537504e-02	ci left: 6.142700e-01	ci right 6.238127e-01	k: 24762	n:40000
KS ci ratio: 9.119702e-02	ci left: 4.213304e-02	ci right 4.618347e-02	k: 1765	n:40000
PKDREJ   40000 perm   13 sec   (3086 perm/sec)   p_kst 4.412500e-02   p_cons 6.190500e-01   p_joint 8.385000e-02

Outputting figure to mutsig2_images.part000000000132/PKDREJ.15_6766_40000_0.044125_0.61905_0.08385.png
                gene_name: PKDREJ
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.087 

Current progress: 7 percent done.
PLCG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.343944e-01	ci left: 7.310807e-02	ci right 8.373906e-02	k: 783	n:10000
Cons ci ratio: 1.753367e-01	ci left: 4.341336e-02	ci right 5.185268e-02	k: 475	n:10000
KS ci ratio: 6.533341e-02	ci left: 2.559738e-01	ci right 2.733635e-01	k: 2646	n:10000
PLCG2   10000 perm   2 sec   (4196 perm/sec)   p_kst 2.646000e-01   p_cons 4.750000e-02   p_joint 7.830000e-02

Joint ci ratio: 9.311361e-02	ci left: 7.759738e-02	ci right 8.522484e-02	k: 1627	n:20000
Cons ci ratio: 1.232388e-01	ci left: 4.517535e-02	ci right 5.115689e-02	k: 962	n:20000
KS ci ratio: 4.765379e-02	ci left: 2.467383e-01	ci right 2.588337e-01	k: 5055	n:20000
PLCG2   20000 perm   5 sec   (3821 perm/sec)   p_kst 2.527500e-01   p_cons 4.810000e-02   p_joint 8.135000e-02

Joint ci ratio: 7.575761e-02	ci left: 7.882098e-02	ci right 8.506027e-02	k: 2457	n:30000
Cons ci ratio: 9.981082e-02	ci left: 4.645421e-02	ci right 5.136696e-02	k: 1466	n:30000
KS ci ratio: 3.775617e-02	ci left: 2.593165e-01	ci right 2.693292e-01	k: 7929	n:30000
PLCG2   30000 perm   8 sec   (3691 perm/sec)   p_kst 2.643000e-01   p_cons 4.886667e-02   p_joint 8.190000e-02

Outputting figure to mutsig2_images.part000000000132/PLCG2.13_3926_30000_0.2643_0.048867_0.0819.png
                gene_name: PLCG2
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.085 

Current progress: 9 percent done.
PLA2R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.044753e-01	ci left: 1.169164e-01	ci right 1.299039e-01	k: 1233	n:10000
Cons ci ratio: 2.272211e-01	ci left: 2.560990e-02	ci right 3.226830e-02	k: 288	n:10000
KS ci ratio: 7.148439e-03	ci left: 9.642561e-01	ci right 9.712679e-01	k: 9679	n:10000
PLA2R1   10000 perm   2 sec   (4068 perm/sec)   p_kst 9.679000e-01   p_cons 2.880000e-02   p_joint 1.233000e-01

Joint ci ratio: 6.012040e-02	ci left: 1.700035e-01	ci right 1.805910e-01	k: 3505	n:20000
Cons ci ratio: 1.499261e-01	ci left: 3.056735e-02	ci right 3.556960e-02	k: 660	n:20000
KS ci ratio: 5.553381e-03	ci left: 9.586889e-01	ci right 9.640759e-01	k: 19229	n:20000
PLA2R1   20000 perm   5 sec   (3864 perm/sec)   p_kst 9.614500e-01   p_cons 3.300000e-02   p_joint 1.752500e-01

Joint ci ratio: 4.235960e-02	ci left: 2.173407e-01	ci right 2.267798e-01	k: 6661	n:30000
Cons ci ratio: 1.211261e-01	ci left: 3.168658e-02	ci right 3.580436e-02	k: 1011	n:30000
KS ci ratio: 4.495674e-03	ci left: 9.598431e-01	ci right 9.642002e-01	k: 28862	n:30000
PLA2R1   30000 perm   8 sec   (3771 perm/sec)   p_kst 9.620667e-01   p_cons 3.370000e-02   p_joint 2.220333e-01

Joint ci ratio: 4.646578e-02	ci left: 1.475289e-01	ci right 1.545719e-01	k: 6041	n:40000
Cons ci ratio: 1.129124e-01	ci left: 2.759610e-02	ci right 3.092271e-02	k: 1169	n:40000
KS ci ratio: 3.917814e-03	ci left: 9.596706e-01	ci right 9.634621e-01	k: 38464	n:40000
PLA2R1   40000 perm   11 sec   (3689 perm/sec)   p_kst 9.616000e-01   p_cons 2.922500e-02   p_joint 1.510250e-01

Joint ci ratio: 5.284475e-02	ci left: 9.651407e-02	ci right 1.017726e-01	k: 4956	n:50000
Cons ci ratio: 1.014396e-01	ci left: 2.752703e-02	ci right 3.048799e-02	k: 1449	n:50000
KS ci ratio: 3.534248e-03	ci left: 9.592253e-01	ci right 9.626409e-01	k: 48048	n:50000
PLA2R1   50000 perm   14 sec   (3631 perm/sec)   p_kst 9.609600e-01   p_cons 2.898000e-02   p_joint 9.912000e-02

Joint ci ratio: 4.152203e-02	ci left: 1.266414e-01	ci right 1.320278e-01	k: 7759	n:60000
Cons ci ratio: 9.304291e-02	ci left: 2.739484e-02	ci right 3.008433e-02	k: 1723	n:60000
KS ci ratio: 3.253747e-03	ci left: 9.587239e-01	ci right 9.618647e-01	k: 57619	n:60000
PLA2R1   60000 perm   17 sec   (3570 perm/sec)   p_kst 9.603167e-01   p_cons 2.871667e-02   p_joint 1.293167e-01

Outputting figure to mutsig2_images.part000000000132/PLA2R1.11_4520_60000_0.96032_0.028717_0.12932.png
                gene_name: PLA2R1
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 10 percent done.
PLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.604104e-02	ci left: 8.495769e-01	ci right 8.634147e-01	k: 8566	n:10000
Cons ci ratio: 1.504835e-02	ci left: 8.648849e-01	ci right 8.780979e-01	k: 8716	n:10000
KS ci ratio: 2.439601e-02	ci left: 7.118940e-01	ci right 7.295772e-01	k: 7208	n:10000
PLD1   10000 perm   2 sec   (5044 perm/sec)   p_kst 7.208000e-01   p_cons 8.716000e-01   p_joint 8.566000e-01

Outputting figure to mutsig2_images.part000000000132/PLD1.11_3329_10000_0.7208_0.8716_0.8566.png
                gene_name: PLD1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 12 percent done.
PLCB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.098228e-01	ci left: 1.067607e-01	ci right 1.192658e-01	k: 1129	n:10000
Cons ci ratio: 1.470375e-02	ci left: 8.700961e-01	ci right 8.830836e-01	k: 8767	n:10000
KS ci ratio: 1.765078e-01	ci left: 4.283864e-02	ci right 5.122777e-02	k: 469	n:10000
PLCB4   10000 perm   2 sec   (4742 perm/sec)   p_kst 4.690000e-02   p_cons 8.767000e-01   p_joint 1.129000e-01

Joint ci ratio: 9.342632e-02	ci left: 7.710809e-02	ci right 8.471428e-02	k: 1617	n:20000
Cons ci ratio: 1.035279e-02	ci left: 8.729778e-01	ci right 8.821121e-01	k: 17552	n:20000
KS ci ratio: 1.270263e-01	ci left: 4.255610e-02	ci right 4.837698e-02	k: 908	n:20000
PLCB4   20000 perm   5 sec   (3990 perm/sec)   p_kst 4.540000e-02   p_cons 8.776000e-01   p_joint 8.085000e-02

Joint ci ratio: 8.041137e-02	ci left: 7.044095e-02	ci right 7.637532e-02	k: 2201	n:30000
Cons ci ratio: 8.446173e-03	ci left: 8.740068e-01	ci right 8.814532e-01	k: 26333	n:30000
KS ci ratio: 1.041381e-01	ci left: 4.274667e-02	ci right 4.747526e-02	k: 1352	n:30000
PLCB4   30000 perm   8 sec   (3953 perm/sec)   p_kst 4.506667e-02   p_cons 8.777667e-01   p_joint 7.336667e-02

Joint ci ratio: 6.874555e-02	ci left: 7.258485e-02	ci right 7.777702e-02	k: 3006	n:40000
Cons ci ratio: 7.387282e-03	ci left: 8.723512e-01	ci right 8.788442e-01	k: 35025	n:40000
KS ci ratio: 9.000385e-02	ci left: 4.323366e-02	ci right 4.733268e-02	k: 1810	n:40000
PLCB4   40000 perm   10 sec   (3906 perm/sec)   p_kst 4.525000e-02   p_cons 8.756250e-01   p_joint 7.515000e-02

Outputting figure to mutsig2_images.part000000000132/PLCB4.10_3769_40000_0.04525_0.87562_0.07515.png
                gene_name: PLCB4
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.078 

Current progress: 14 percent done.
PLCE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.947002e-02	ci left: 2.330389e-01	ci right 2.499119e-01	k: 2414	n:10000
Cons ci ratio: 8.859915e-02	ci left: 1.563986e-01	ci right 1.709979e-01	k: 1636	n:10000
KS ci ratio: 5.924317e-02	ci left: 2.953892e-01	ci right 3.135248e-01	k: 3044	n:10000
PLCE1   10000 perm   3 sec   (3731 perm/sec)   p_kst 3.044000e-01   p_cons 1.636000e-01   p_joint 2.414000e-01

Outputting figure to mutsig2_images.part000000000132/PLCE1.9_7319_10000_0.3044_0.1636_0.2414.png
                gene_name: PLCE1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 16 percent done.
PKD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.242904e-01	ci left: 1.206533e-02	ci right 1.682370e-02	k: 143	n:10000
Cons ci ratio: 2.423184e-01	ci left: 2.240510e-02	ci right 2.867545e-02	k: 254	n:10000
KS ci ratio: 1.292744e-01	ci left: 7.873206e-02	ci right 8.971158e-02	k: 841	n:10000
PKD2   10000 perm   2 sec   (4773 perm/sec)   p_kst 8.410000e-02   p_cons 2.540000e-02   p_joint 1.430000e-02

Joint ci ratio: 2.313597e-01	ci left: 1.251190e-02	ci right 1.583155e-02	k: 282	n:20000
Cons ci ratio: 1.628626e-01	ci left: 2.585348e-02	ci right 3.048506e-02	k: 562	n:20000
KS ci ratio: 9.073774e-02	ci left: 8.146427e-02	ci right 8.925677e-02	k: 1706	n:20000
PKD2   20000 perm   5 sec   (4328 perm/sec)   p_kst 8.530000e-02   p_cons 2.810000e-02   p_joint 1.410000e-02

Joint ci ratio: 2.165951e-01	ci left: 9.629741e-03	ci right 1.199976e-02	k: 323	n:30000
Cons ci ratio: 1.345851e-01	ci left: 2.564642e-02	ci right 2.937917e-02	k: 824	n:30000
KS ci ratio: 7.468709e-02	ci left: 8.095037e-02	ci right 8.726378e-02	k: 2522	n:30000
PKD2   30000 perm   7 sec   (4159 perm/sec)   p_kst 8.406667e-02   p_cons 2.746667e-02   p_joint 1.076667e-02

Joint ci ratio: 2.077153e-01	ci left: 7.908047e-03	ci right 9.764313e-03	k: 352	n:40000
Cons ci ratio: 1.163373e-01	ci left: 2.599213e-02	ci right 2.922694e-02	k: 1103	n:40000
KS ci ratio: 6.394713e-02	ci left: 8.312229e-02	ci right 8.863801e-02	k: 3434	n:40000
PKD2   40000 perm   10 sec   (4053 perm/sec)   p_kst 8.585000e-02   p_cons 2.757500e-02   p_joint 8.800000e-03

Joint ci ratio: 1.095235e-01	ci left: 2.361023e-02	ci right 2.636530e-02	k: 1248	n:50000
Cons ci ratio: 1.043670e-01	ci left: 2.600609e-02	ci right 2.888912e-02	k: 1371	n:50000
KS ci ratio: 5.744349e-02	ci left: 8.274732e-02	ci right 8.766096e-02	k: 4259	n:50000
PKD2   50000 perm   13 sec   (3958 perm/sec)   p_kst 8.518000e-02   p_cons 2.742000e-02   p_joint 2.496000e-02

Joint ci ratio: 1.139762e-01	ci left: 1.823034e-02	ci right 2.044983e-02	k: 1159	n:60000
Cons ci ratio: 9.528563e-02	ci left: 2.612463e-02	ci right 2.875468e-02	k: 1645	n:60000
KS ci ratio: 5.225996e-02	ci left: 8.348842e-02	ci right 8.798508e-02	k: 5143	n:60000
PKD2   60000 perm   15 sec   (3889 perm/sec)   p_kst 8.571667e-02   p_cons 2.741667e-02   p_joint 1.931667e-02

Joint ci ratio: 1.177497e-01	ci left: 1.466723e-02	ci right 1.651610e-02	k: 1090	n:70000
Cons ci ratio: 8.275657e-02	ci left: 2.977039e-02	ci right 3.235439e-02	k: 2173	n:70000
KS ci ratio: 4.827932e-02	ci left: 8.398963e-02	ci right 8.815904e-02	k: 6024	n:70000
PKD2   70000 perm   18 sec   (3833 perm/sec)   p_kst 8.605714e-02   p_cons 3.104286e-02   p_joint 1.557143e-02

Joint ci ratio: 1.253594e-01	ci left: 1.131752e-02	ci right 1.284317e-02	k: 965	n:80000
Cons ci ratio: 7.789143e-02	ci left: 2.949090e-02	ci right 3.189330e-02	k: 2454	n:80000
KS ci ratio: 4.574784e-02	ci left: 8.213617e-02	ci right 8.599405e-02	k: 6724	n:80000
PKD2   80000 perm   21 sec   (3777 perm/sec)   p_kst 8.405000e-02   p_cons 3.067500e-02   p_joint 1.206250e-02

Joint ci ratio: 1.206731e-01	ci left: 1.088911e-02	ci right 1.229819e-02	k: 1042	n:90000
Cons ci ratio: 7.361400e-02	ci left: 2.941889e-02	ci right 3.167817e-02	k: 2748	n:90000
KS ci ratio: 4.302179e-02	ci left: 8.263572e-02	ci right 8.628000e-02	k: 7600	n:90000
PKD2   90000 perm   24 sec   (3723 perm/sec)   p_kst 8.444444e-02   p_cons 3.053333e-02   p_joint 1.157778e-02

Joint ci ratio: 1.224762e-01	ci left: 9.518597e-03	ci right 1.077006e-02	k: 1013	n:100000
Cons ci ratio: 6.966537e-02	ci left: 2.961980e-02	ci right 3.176754e-02	k: 3068	n:100000
KS ci ratio: 4.084195e-02	ci left: 8.262468e-02	ci right 8.607947e-02	k: 8434	n:100000
PKD2   100000 perm   27 sec   (3638 perm/sec)   p_kst 8.434000e-02   p_cons 3.068000e-02   p_joint 1.013000e-02

Joint ci ratio: 1.186388e-01	ci left: 9.243916e-03	ci right 1.041851e-02	k: 1080	n:110000
Cons ci ratio: 6.591047e-02	ci left: 3.012674e-02	ci right 3.218899e-02	k: 3426	n:110000
KS ci ratio: 3.897456e-02	ci left: 8.257444e-02	ci right 8.586570e-02	k: 9263	n:110000
PKD2   110000 perm   32 sec   (3411 perm/sec)   p_kst 8.420909e-02   p_cons 3.114545e-02   p_joint 9.818182e-03

Joint ci ratio: 9.595558e-02	ci left: 1.305805e-02	ci right 1.438227e-02	k: 1645	n:120000
Cons ci ratio: 6.485817e-02	ci left: 2.858268e-02	ci right 3.050681e-02	k: 3544	n:120000
KS ci ratio: 3.729956e-02	ci left: 8.270912e-02	ci right 8.586100e-02	k: 10113	n:120000
PKD2   120000 perm   36 sec   (3354 perm/sec)   p_kst 8.427500e-02   p_cons 2.953333e-02   p_joint 1.370833e-02

Outputting figure to mutsig2_images.part000000000132/PKD2.8_2967_120000_0.084275_0.029533_0.013708.png
                gene_name: PKD2
               theta_stop: 0.096 
                    nperm: 120000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 17 percent done.
PLA2G4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.672327e-02	ci left: 1.989967e-01	ci right 2.149743e-01	k: 2069	n:10000
Cons ci ratio: 5.347955e-02	ci left: 3.400502e-01	ci right 3.588375e-01	k: 3494	n:10000
KS ci ratio: 8.988259e-02	ci left: 1.525700e-01	ci right 1.670288e-01	k: 1597	n:10000
PLA2G4A   10000 perm   3 sec   (2914 perm/sec)   p_kst 1.597000e-01   p_cons 3.494000e-01   p_joint 2.069000e-01

Outputting figure to mutsig2_images.part000000000132/PLA2G4A.8_2318_10000_0.1597_0.3494_0.2069.png
                gene_name: PLA2G4A
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 19 percent done.
PLA2G4C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.644396e-02	ci left: 2.001794e-01	ci right 2.161909e-01	k: 2081	n:10000
Cons ci ratio: 2.812068e-02	ci left: 6.508212e-01	ci right 6.694854e-01	k: 6602	n:10000
KS ci ratio: 1.049610e-01	ci left: 1.159392e-01	ci right 1.288817e-01	k: 1223	n:10000
PLA2G4C   10000 perm   2 sec   (4785 perm/sec)   p_kst 1.223000e-01   p_cons 6.602000e-01   p_joint 2.081000e-01

Joint ci ratio: 5.416971e-02	ci left: 2.018483e-01	ci right 2.131369e-01	k: 4149	n:20000
Cons ci ratio: 1.995162e-02	ci left: 6.520811e-01	ci right 6.652727e-01	k: 13174	n:20000
KS ci ratio: 7.242749e-02	ci left: 1.231038e-01	ci right 1.324047e-01	k: 2554	n:20000
PLA2G4C   20000 perm   5 sec   (3943 perm/sec)   p_kst 1.277000e-01   p_cons 6.587000e-01   p_joint 2.074500e-01

Outputting figure to mutsig2_images.part000000000132/PLA2G4C.8_1759_20000_0.1277_0.6587_0.20745.png
                gene_name: PLA2G4C
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 21 percent done.
PLCB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.248696e-02	ci left: 7.438177e-01	ci right 7.608351e-01	k: 7524	n:10000
Cons ci ratio: 4.101545e-02	ci left: 4.674681e-01	ci right 4.871451e-01	k: 4773	n:10000
KS ci ratio: 2.159350e-02	ci left: 7.587897e-01	ci right 7.754544e-01	k: 7672	n:10000
PLCB1   10000 perm   3 sec   (3741 perm/sec)   p_kst 7.672000e-01   p_cons 4.773000e-01   p_joint 7.524000e-01

Outputting figure to mutsig2_images.part000000000132/PLCB1.8_3882_10000_0.7672_0.4773_0.7524.png
                gene_name: PLCB1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 22 percent done.
PLCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.021878e-02	ci left: 1.515885e-01	ci right 1.660108e-01	k: 1587	n:10000
Cons ci ratio: 7.926594e-02	ci left: 1.886528e-01	ci right 2.043244e-01	k: 1964	n:10000
KS ci ratio: 1.356182e-01	ci left: 7.184865e-02	ci right 8.239926e-02	k: 770	n:10000
PLCL1   10000 perm   3 sec   (3304 perm/sec)   p_kst 7.700000e-02   p_cons 1.964000e-01   p_joint 1.587000e-01

Joint ci ratio: 7.638710e-02	ci left: 1.118880e-01	ci right 1.208239e-01	k: 2326	n:20000
Cons ci ratio: 5.625515e-02	ci left: 1.898254e-01	ci right 2.008633e-01	k: 3906	n:20000
KS ci ratio: 9.984730e-02	ci left: 6.796658e-02	ci right 7.515858e-02	k: 1430	n:20000
PLCL1   20000 perm   6 sec   (3385 perm/sec)   p_kst 7.150000e-02   p_cons 1.953000e-01   p_joint 1.163000e-01

Outputting figure to mutsig2_images.part000000000132/PLCL1.8_3312_20000_0.0715_0.1953_0.1163.png
                gene_name: PLCL1
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 24 percent done.
PKD2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.022109e-02	ci left: 3.689804e-01	ci right 3.880904e-01	k: 3785	n:10000
Cons ci ratio: 4.175413e-02	ci left: 4.585802e-01	ci right 4.782382e-01	k: 4684	n:10000
KS ci ratio: 6.270362e-02	ci left: 2.721060e-01	ci right 2.898218e-01	k: 2809	n:10000
PKD2L1   10000 perm   2 sec   (4832 perm/sec)   p_kst 2.809000e-01   p_cons 4.684000e-01   p_joint 3.785000e-01

Outputting figure to mutsig2_images.part000000000132/PKD2L1.7_2482_10000_0.2809_0.4684_0.3785.png
                gene_name: PKD2L1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 26 percent done.
PKP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.400154e-02	ci left: 5.608290e-01	ci right 5.803299e-01	k: 5706	n:10000
Cons ci ratio: 2.376064e-02	ci left: 7.224953e-01	ci right 7.399698e-01	k: 7313	n:10000
KS ci ratio: 5.453085e-02	ci left: 3.313090e-01	ci right 3.499839e-01	k: 3406	n:10000
PKP2   10000 perm   2 sec   (4993 perm/sec)   p_kst 3.406000e-01   p_cons 7.313000e-01   p_joint 5.706000e-01

Outputting figure to mutsig2_images.part000000000132/PKP2.7_2702_10000_0.3406_0.7313_0.5706.png
                gene_name: PKP2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 28 percent done.
PLCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.269431e-02	ci left: 5.799842e-01	ci right 5.993635e-01	k: 5897	n:10000
Cons ci ratio: 5.442180e-02	ci left: 3.322029e-01	ci right 3.508895e-01	k: 3415	n:10000
KS ci ratio: 1.502819e-02	ci left: 8.651913e-01	ci right 8.783912e-01	k: 8719	n:10000
PLCD1   10000 perm   2 sec   (5351 perm/sec)   p_kst 8.719000e-01   p_cons 3.415000e-01   p_joint 5.897000e-01

Outputting figure to mutsig2_images.part000000000132/PLCD1.7_2432_10000_0.8719_0.3415_0.5897.png
                gene_name: PLCD1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 29 percent done.
PLCL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.080668e-02	ci left: 7.719526e-01	ci right 7.882839e-01	k: 7802	n:10000
Cons ci ratio: 1.388292e-02	ci left: 8.822699e-01	ci right 8.947028e-01	k: 8886	n:10000
KS ci ratio: 2.835916e-02	ci left: 6.469974e-01	ci right 6.657114e-01	k: 6564	n:10000
PLCL2   10000 perm   2 sec   (4733 perm/sec)   p_kst 6.564000e-01   p_cons 8.886000e-01   p_joint 7.802000e-01

Outputting figure to mutsig2_images.part000000000132/PLCL2.7_3393_10000_0.6564_0.8886_0.7802.png
                gene_name: PLCL2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 31 percent done.
PKD2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.210389e-02	ci left: 2.759680e-01	ci right 2.937575e-01	k: 2848	n:10000
Cons ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
KS ci ratio: 3.070545e-02	ci left: 6.101014e-01	ci right 6.292288e-01	k: 6197	n:10000
PKD2L2   10000 perm   2 sec   (4805 perm/sec)   p_kst 6.197000e-01   p_cons 7.170000e-02   p_joint 2.848000e-01

Joint ci ratio: 5.227558e-02	ci left: 2.136807e-01	ci right 2.252010e-01	k: 4388	n:20000
Cons ci ratio: 1.018151e-01	ci left: 6.547640e-02	ci right 7.254953e-02	k: 1379	n:20000
KS ci ratio: 2.166247e-02	ci left: 6.140336e-01	ci right 6.275313e-01	k: 12416	n:20000
PKD2L2   20000 perm   5 sec   (4387 perm/sec)   p_kst 6.208000e-01   p_cons 6.895000e-02   p_joint 2.194000e-01

Joint ci ratio: 4.483463e-02	ci left: 1.984937e-01	ci right 2.076305e-01	k: 6091	n:30000
Cons ci ratio: 7.900680e-02	ci left: 7.282946e-02	ci right 7.885299e-02	k: 2274	n:30000
KS ci ratio: 1.773022e-02	ci left: 6.141451e-01	ci right 6.251650e-01	k: 18590	n:30000
PKD2L2   30000 perm   7 sec   (4193 perm/sec)   p_kst 6.196667e-01   p_cons 7.580000e-02   p_joint 2.030333e-01

Outputting figure to mutsig2_images.part000000000132/PKD2L2.6_1898_30000_0.61967_0.0758_0.20303.png
                gene_name: PKD2L2
               theta_stop: 0.079 
                    nperm: 30000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 33 percent done.
PKN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.177040e-02	ci left: 5.938334e-01	ci right 6.131063e-01	k: 6035	n:10000
Cons ci ratio: 1.109475e-02	ci left: 9.205911e-01	ci right 9.309592e-01	k: 9259	n:10000
KS ci ratio: 6.270362e-02	ci left: 2.721060e-01	ci right 2.898218e-01	k: 2809	n:10000
PKN2   10000 perm   2 sec   (4554 perm/sec)   p_kst 2.809000e-01   p_cons 9.259000e-01   p_joint 6.035000e-01

Outputting figure to mutsig2_images.part000000000132/PKN2.6_3043_10000_0.2809_0.9259_0.6035.png
                gene_name: PKN2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 34 percent done.
PKP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.097639e-02	ci left: 7.691165e-01	ci right 7.855216e-01	k: 7774	n:10000
KS ci ratio: 2.253522e-02	ci left: 7.430088e-01	ci right 7.600445e-01	k: 7516	n:10000
PKP4   10000 perm   2 sec   (4729 perm/sec)   p_kst 7.516000e-01   p_cons 7.774000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PKP4.6_3663_10000_0.7516_0.7774_1.png
                gene_name: PKP4
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
PLAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.918346e-02	ci left: 7.989230e-01	ci right 8.144979e-01	k: 8068	n:10000
Cons ci ratio: 4.217566e-02	ci left: 4.535883e-01	ci right 4.732330e-01	k: 4634	n:10000
KS ci ratio: 1.225679e-02	ci left: 9.052487e-01	ci right 9.165106e-01	k: 9110	n:10000
PLAG1   10000 perm   2 sec   (5441 perm/sec)   p_kst 9.110000e-01   p_cons 4.634000e-01   p_joint 8.068000e-01

Outputting figure to mutsig2_images.part000000000132/PLAG1.6_1511_10000_0.911_0.4634_0.8068.png
                gene_name: PLAG1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 38 percent done.
PLEK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.767244e-02	ci left: 3.936645e-01	ci right 4.129918e-01	k: 4033	n:10000
KS ci ratio: 1.298328e-02	ci left: 8.951842e-01	ci right 9.069810e-01	k: 9012	n:10000
PLEK   10000 perm   2 sec   (5678 perm/sec)   p_kst 9.012000e-01   p_cons 4.033000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLEK.6_1089_10000_0.9012_0.4033_1.png
                gene_name: PLEK
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
PLA2G7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.236221e-02	ci left: 9.038097e-01	ci right 9.151504e-01	k: 9096	n:10000
Cons ci ratio: 2.881942e-02	ci left: 6.396537e-01	ci right 6.584594e-01	k: 6491	n:10000
KS ci ratio: 1.887534e-02	ci left: 8.039987e-01	ci right 8.194193e-01	k: 8118	n:10000
PLA2G7   10000 perm   2 sec   (6082 perm/sec)   p_kst 8.118000e-01   p_cons 6.491000e-01   p_joint 9.096000e-01

Outputting figure to mutsig2_images.part000000000132/PLA2G7.5_1370_10000_0.8118_0.6491_0.9096.png
                gene_name: PLA2G7
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 41 percent done.
PLAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.034183e-02	ci left: 6.157275e-01	ci right 6.347995e-01	k: 6253	n:10000
Cons ci ratio: 4.745527e-02	ci left: 3.958555e-01	ci right 4.151996e-01	k: 4055	n:10000
KS ci ratio: 2.973629e-02	ci left: 6.251744e-01	ci right 6.441471e-01	k: 6347	n:10000
PLAT   10000 perm   2 sec   (5275 perm/sec)   p_kst 6.347000e-01   p_cons 4.055000e-01   p_joint 6.253000e-01

Outputting figure to mutsig2_images.part000000000132/PLAT.5_1741_10000_0.6347_0.4055_0.6253.png
                gene_name: PLAT
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 43 percent done.
PLD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.104141e-02	ci left: 2.250393e-01	ci right 2.417163e-01	k: 2333	n:10000
Cons ci ratio: 1.398082e-02	ci left: 8.808366e-01	ci right 8.933369e-01	k: 8872	n:10000
KS ci ratio: 1.013601e-01	ci left: 1.234670e-01	ci right 1.367493e-01	k: 1300	n:10000
PLD3   10000 perm   2 sec   (5823 perm/sec)   p_kst 1.300000e-01   p_cons 8.872000e-01   p_joint 2.333000e-01

Joint ci ratio: 4.622771e-02	ci left: 2.582976e-01	ci right 2.705710e-01	k: 5288	n:20000
Cons ci ratio: 9.434680e-03	ci left: 8.918902e-01	ci right 9.003942e-01	k: 17924	n:20000
KS ci ratio: 7.101623e-02	ci left: 1.274853e-01	ci right 1.369219e-01	k: 2643	n:20000
PLD3   20000 perm   4 sec   (5240 perm/sec)   p_kst 1.321500e-01   p_cons 8.962000e-01   p_joint 2.644000e-01

Outputting figure to mutsig2_images.part000000000132/PLD3.5_1517_20000_0.13215_0.8962_0.2644.png
                gene_name: PLD3
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 45 percent done.
PLD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.223957e-02	ci left: 7.479640e-01	ci right 7.648864e-01	k: 7565	n:10000
KS ci ratio: 2.354916e-02	ci left: 7.260304e-01	ci right 7.434327e-01	k: 7348	n:10000
PLD5   10000 perm   2 sec   (5629 perm/sec)   p_kst 7.348000e-01   p_cons 7.565000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLD5.5_1371_10000_0.7348_0.7565_1.png
                gene_name: PLD5
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
PLEC
Processing conservation and coverage...
67% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.132760e-02	ci left: 3.588357e-01	ci right 3.778410e-01	k: 3683	n:10000
Cons ci ratio: 9.817468e-02	ci left: 1.307088e-01	ci right 1.443032e-01	k: 1374	n:10000
KS ci ratio: 3.881196e-02	ci left: 4.950504e-01	ci right 5.147467e-01	k: 5049	n:10000
PLEC   10000 perm   4 sec   (2832 perm/sec)   p_kst 5.049000e-01   p_cons 1.374000e-01   p_joint 3.683000e-01

Outputting figure to mutsig2_images.part000000000132/PLEC.5_14884_10000_0.5049_0.1374_0.3683.png
                gene_name: PLEC
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 48 percent done.
PLA2G6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.528263e-02	ci left: 8.613106e-01	ci right 8.746743e-01	k: 8681	n:10000
KS ci ratio: 1.398082e-02	ci left: 8.808366e-01	ci right 8.933369e-01	k: 8872	n:10000
PLA2G6   10000 perm   2 sec   (5623 perm/sec)   p_kst 8.872000e-01   p_cons 8.681000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLA2G6.4_2485_10000_0.8872_0.8681_1.png
                gene_name: PLA2G6
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
PLAGL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.210789e-02	ci left: 4.543870e-01	ci right 4.740339e-01	k: 4642	n:10000
KS ci ratio: 1.254905e-02	ci left: 9.012412e-01	ci right 9.127205e-01	k: 9071	n:10000
PLAGL1   10000 perm   2 sec   (5777 perm/sec)   p_kst 9.071000e-01   p_cons 4.642000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLAGL1.4_1400_10000_0.9071_0.4642_1.png
                gene_name: PLAGL1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
PLAUR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.698126e-02	ci left: 1.979127e-01	ci right 2.138590e-01	k: 2058	n:10000
Cons ci ratio: 3.417529e-02	ci left: 5.583228e-01	ci right 5.778375e-01	k: 5681	n:10000
KS ci ratio: 1.024951e-01	ci left: 1.210221e-01	ci right 1.341957e-01	k: 1275	n:10000
PLAUR   10000 perm   2 sec   (6218 perm/sec)   p_kst 1.275000e-01   p_cons 5.681000e-01   p_joint 2.058000e-01

Joint ci ratio: 4.742157e-02	ci left: 2.485735e-01	ci right 2.606979e-01	k: 5092	n:20000
Cons ci ratio: 2.336896e-02	ci left: 5.776333e-01	ci right 5.913421e-01	k: 11690	n:20000
KS ci ratio: 7.164200e-02	ci left: 1.255159e-01	ci right 1.348919e-01	k: 2603	n:20000
PLAUR   20000 perm   4 sec   (5531 perm/sec)   p_kst 1.301500e-01   p_cons 5.845000e-01   p_joint 2.546000e-01

Outputting figure to mutsig2_images.part000000000132/PLAUR.4_1132_20000_0.13015_0.5845_0.2546.png
                gene_name: PLAUR
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 53 percent done.
PLCB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.398202e-02	ci left: 2.110256e-01	ci right 2.273383e-01	k: 2191	n:10000
Cons ci ratio: 1.205647e-01	ci left: 8.980798e-02	ci right 1.014288e-01	k: 955	n:10000
KS ci ratio: 3.843345e-02	ci left: 4.999504e-01	ci right 5.196439e-01	k: 5098	n:10000
PLCB3   10000 perm   2 sec   (4834 perm/sec)   p_kst 5.098000e-01   p_cons 9.550000e-02   p_joint 2.191000e-01

Joint ci ratio: 4.034148e-02	ci left: 3.141831e-01	ci right 3.271691e-01	k: 6413	n:20000
Cons ci ratio: 8.442632e-02	ci left: 9.317735e-02	ci right 1.014401e-01	k: 1945	n:20000
KS ci ratio: 2.654405e-02	ci left: 5.146492e-01	ci right 5.285445e-01	k: 10432	n:20000
PLCB3   20000 perm   5 sec   (4393 perm/sec)   p_kst 5.216000e-01   p_cons 9.725000e-02   p_joint 3.206500e-01

Outputting figure to mutsig2_images.part000000000132/PLCB3.4_3829_20000_0.5216_0.09725_0.32065.png
                gene_name: PLCB3
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 55 percent done.
PLCG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.496648e-03	ci left: 9.610001e-01	ci right 9.683260e-01	k: 9648	n:10000
Cons ci ratio: 3.958796e-02	ci left: 4.851533e-01	ci right 5.048496e-01	k: 4950	n:10000
KS ci ratio: 1.203653e-02	ci left: 9.082308e-01	ci right 9.193268e-01	k: 9139	n:10000
PLCG1   10000 perm   2 sec   (4915 perm/sec)   p_kst 9.139000e-01   p_cons 4.950000e-01   p_joint 9.648000e-01

Outputting figure to mutsig2_images.part000000000132/PLCG1.4_4004_10000_0.9139_0.495_0.9648.png
                gene_name: PLCG1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 57 percent done.
PLCZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.307046e-02	ci left: 3.435278e-01	ci right 3.623579e-01	k: 3529	n:10000
Cons ci ratio: 5.917331e-02	ci left: 2.958849e-01	ci right 3.140289e-01	k: 3049	n:10000
KS ci ratio: 5.473782e-02	ci left: 3.296208e-01	ci right 3.482731e-01	k: 3389	n:10000
PLCZ1   10000 perm   2 sec   (5445 perm/sec)   p_kst 3.389000e-01   p_cons 3.049000e-01   p_joint 3.529000e-01

Outputting figure to mutsig2_images.part000000000132/PLCZ1.4_1883_10000_0.3389_0.3049_0.3529.png
                gene_name: PLCZ1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 59 percent done.
PKN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.552514e-02	ci left: 1.661239e-01	ci right 1.810667e-01	k: 1735	n:10000
Cons ci ratio: 6.385595e-02	ci left: 2.648793e-01	ci right 2.824527e-01	k: 2736	n:10000
KS ci ratio: 8.818083e-02	ci left: 1.576751e-01	ci right 1.723206e-01	k: 1649	n:10000
PKN1   10000 perm   2 sec   (5427 perm/sec)   p_kst 1.649000e-01   p_cons 2.736000e-01   p_joint 1.735000e-01

Outputting figure to mutsig2_images.part000000000132/PKN1.3_2960_10000_0.1649_0.2736_0.1735.png
                gene_name: PKN1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 60 percent done.
PKNOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.996185e-02	ci left: 4.804561e-01	ci right 5.001496e-01	k: 4903	n:10000
KS ci ratio: 9.028594e-03	ci left: 9.452335e-01	ci right 9.539023e-01	k: 9497	n:10000
PKNOX2   10000 perm   2 sec   (6061 perm/sec)   p_kst 9.497000e-01   p_cons 4.903000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PKNOX2.3_1459_10000_0.9497_0.4903_1.png
                gene_name: PKNOX2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
PLA1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.901577e-02	ci left: 6.365358e-01	ci right 6.553791e-01	k: 6460	n:10000
Cons ci ratio: 4.599094e-02	ci left: 4.109985e-01	ci right 4.304477e-01	k: 4207	n:10000
KS ci ratio: 3.479209e-02	ci left: 5.495033e-01	ci right 5.690622e-01	k: 5593	n:10000
PLA1A   10000 perm   2 sec   (6130 perm/sec)   p_kst 5.593000e-01   p_cons 4.207000e-01   p_joint 6.460000e-01

Outputting figure to mutsig2_images.part000000000132/PLA1A.3_1415_10000_0.5593_0.4207_0.646.png
                gene_name: PLA1A
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 64 percent done.
PLA2G4D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.399040e-02	ci left: 7.186579e-01	ci right 7.362094e-01	k: 7275	n:10000
Cons ci ratio: 3.354587e-02	ci left: 5.674464e-01	ci right 5.869086e-01	k: 5772	n:10000
KS ci ratio: 4.108126e-02	ci left: 4.666691e-01	ci right 4.863446e-01	k: 4765	n:10000
PLA2G4D   10000 perm   2 sec   (5503 perm/sec)   p_kst 4.765000e-01   p_cons 5.772000e-01   p_joint 7.275000e-01

Outputting figure to mutsig2_images.part000000000132/PLA2G4D.3_2537_10000_0.4765_0.5772_0.7275.png
                gene_name: PLA2G4D
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 66 percent done.
PLAA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.592994e-02	ci left: 8.513105e-01	ci right 8.650802e-01	k: 8583	n:10000
KS ci ratio: 2.302997e-02	ci left: 7.347196e-01	ci right 7.519384e-01	k: 7434	n:10000
PLAA   10000 perm   2 sec   (5762 perm/sec)   p_kst 7.434000e-01   p_cons 8.583000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLAA.3_2444_10000_0.7434_0.8583_1.png
                gene_name: PLAA
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
PLAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.041866e-01	ci left: 1.175028e-01	ci right 1.305171e-01	k: 1239	n:10000
Cons ci ratio: 1.032447e-02	ci left: 9.301971e-01	ci right 9.399476e-01	k: 9352	n:10000
KS ci ratio: 1.761150e-01	ci left: 4.303019e-02	ci right 5.143610e-02	k: 471	n:10000
PLAC1   10000 perm   2 sec   (6350 perm/sec)   p_kst 4.710000e-02   p_cons 9.352000e-01   p_joint 1.239000e-01

Joint ci ratio: 8.862553e-02	ci left: 8.513767e-02	ci right 9.308226e-02	k: 1781	n:20000
Cons ci ratio: 7.241101e-03	ci left: 9.326728e-01	ci right 9.394997e-01	k: 18723	n:20000
KS ci ratio: 1.250922e-01	ci left: 4.386539e-02	ci right 4.976727e-02	k: 935	n:20000
PLAC1   20000 perm   4 sec   (5343 perm/sec)   p_kst 4.675000e-02   p_cons 9.361500e-01   p_joint 8.905000e-02

Joint ci ratio: 4.315145e-02	ci left: 2.110567e-01	ci right 2.203984e-01	k: 6471	n:30000
Cons ci ratio: 6.085350e-03	ci left: 9.297042e-01	ci right 9.354117e-01	k: 27978	n:30000
KS ci ratio: 1.004970e-01	ci left: 4.583599e-02	ci right 5.071864e-02	k: 1447	n:30000
PLAC1   30000 perm   6 sec   (5175 perm/sec)   p_kst 4.823333e-02   p_cons 9.326000e-01   p_joint 2.157000e-01

Joint ci ratio: 4.450392e-02	ci left: 1.588225e-01	ci right 1.660765e-01	k: 6497	n:40000
Cons ci ratio: 5.276115e-03	ci left: 9.299465e-01	ci right 9.348905e-01	k: 37298	n:40000
KS ci ratio: 8.788961e-02	ci left: 4.528907e-02	ci right 4.947695e-02	k: 1894	n:40000
PLAC1   40000 perm   8 sec   (5050 perm/sec)   p_kst 4.735000e-02   p_cons 9.324500e-01   p_joint 1.624250e-01

Outputting figure to mutsig2_images.part000000000132/PLAC1.3_643_40000_0.04735_0.93245_0.16243.png
                gene_name: PLAC1
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 69 percent done.
PLAU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.035478e-02	ci left: 6.155265e-01	ci right 6.346006e-01	k: 6251	n:10000
Cons ci ratio: 6.857181e-02	ci left: 2.377814e-01	ci right 2.547666e-01	k: 2462	n:10000
KS ci ratio: 3.525308e-02	ci left: 5.429908e-01	ci right 5.625785e-01	k: 5528	n:10000
PLAU   10000 perm   2 sec   (5938 perm/sec)   p_kst 5.528000e-01   p_cons 2.462000e-01   p_joint 6.251000e-01

Outputting figure to mutsig2_images.part000000000132/PLAU.3_1374_10000_0.5528_0.2462_0.6251.png
                gene_name: PLAU
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 71 percent done.
PLB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.313783e-02	ci left: 4.424102e-01	ci right 4.620177e-01	k: 4522	n:10000
Cons ci ratio: 2.414167e-02	ci left: 7.161338e-01	ci right 7.337350e-01	k: 7250	n:10000
KS ci ratio: 6.524960e-02	ci left: 2.564684e-01	ci right 2.738686e-01	k: 2651	n:10000
PLB1   10000 perm   2 sec   (4852 perm/sec)   p_kst 2.651000e-01   p_cons 7.250000e-01   p_joint 4.522000e-01

Outputting figure to mutsig2_images.part000000000132/PLB1.3_4642_10000_0.2651_0.725_0.4522.png
                gene_name: PLB1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 72 percent done.
PLCB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.779024e-01	ci left: 4.216838e-02	ci right 5.049848e-02	k: 462	n:10000
Cons ci ratio: 1.591685e-02	ci left: 8.515144e-01	ci right 8.652761e-01	k: 8585	n:10000
KS ci ratio: 7.029257e-01	ci left: 2.024975e-03	ci right 4.279939e-03	k: 30	n:10000
PLCB2   10000 perm   2 sec   (5349 perm/sec)   p_kst 3.000000e-03   p_cons 8.585000e-01   p_joint 4.620000e-02

Joint ci ratio: 1.300529e-01	ci left: 4.061770e-02	ci right 4.631599e-02	k: 868	n:20000
Cons ci ratio: 1.167452e-02	ci left: 8.443168e-01	ci right 8.542814e-01	k: 16987	n:20000
KS ci ratio: 5.184634e-01	ci left: 2.115762e-03	ci right 3.634512e-03	k: 56	n:20000
PLCB2   20000 perm   4 sec   (4808 perm/sec)   p_kst 2.800000e-03   p_cons 8.493500e-01   p_joint 4.340000e-02

Joint ci ratio: 1.385197e-01	ci left: 2.419639e-02	ci right 2.782952e-02	k: 779	n:30000
Cons ci ratio: 9.501577e-03	ci left: 8.460774e-01	ci right 8.541880e-01	k: 25505	n:30000
KS ci ratio: 4.461444e-01	ci left: 1.996482e-03	ci right 3.169833e-03	k: 76	n:30000
PLCB2   30000 perm   7 sec   (4603 perm/sec)   p_kst 2.533333e-03   p_cons 8.501667e-01   p_joint 2.596667e-02

Joint ci ratio: 1.514366e-01	ci left: 1.522618e-02	ci right 1.774472e-02	k: 658	n:40000
Cons ci ratio: 8.261327e-03	ci left: 8.456048e-01	ci right 8.526444e-01	k: 33966	n:40000
KS ci ratio: 3.238249e-01	ci left: 3.059825e-03	ci right 4.264004e-03	k: 145	n:40000
PLCB2   40000 perm   9 sec   (4456 perm/sec)   p_kst 3.625000e-03   p_cons 8.491500e-01   p_joint 1.645000e-02

Joint ci ratio: 1.668404e-01	ci left: 1.000837e-02	ci right 1.184908e-02	k: 545	n:50000
Cons ci ratio: 7.409575e-03	ci left: 8.452666e-01	ci right 8.515729e-01	k: 42422	n:50000
KS ci ratio: 3.065342e-01	ci left: 2.760914e-03	ci right 3.778109e-03	k: 162	n:50000
PLCB2   50000 perm   11 sec   (4351 perm/sec)   p_kst 3.240000e-03   p_cons 8.484400e-01   p_joint 1.090000e-02

Joint ci ratio: 1.728398e-01	ci left: 7.765004e-03	ci right 9.249791e-03	k: 509	n:60000
Cons ci ratio: 6.788223e-03	ci left: 8.446151e-01	ci right 8.503846e-01	k: 50851	n:60000
KS ci ratio: 2.817113e-01	ci left: 2.763933e-03	ci right 3.685156e-03	k: 192	n:60000
PLCB2   60000 perm   14 sec   (4263 perm/sec)   p_kst 3.200000e-03   p_cons 8.475167e-01   p_joint 8.483333e-03

Joint ci ratio: 1.636645e-01	ci left: 7.463004e-03	ci right 8.806820e-03	k: 568	n:70000
Cons ci ratio: 6.314210e-03	ci left: 8.436067e-01	ci right 8.489645e-01	k: 59241	n:70000
KS ci ratio: 2.580503e-01	ci left: 2.861975e-03	ci right 3.722870e-03	k: 229	n:70000
PLCB2   70000 perm   17 sec   (4186 perm/sec)   p_kst 3.271429e-03   p_cons 8.463000e-01   p_joint 8.114286e-03

Joint ci ratio: 1.385991e-01	ci left: 9.213441e-03	ci right 1.059745e-02	k: 791	n:80000
Cons ci ratio: 5.889070e-03	ci left: 8.445495e-01	ci right 8.495503e-01	k: 67765	n:80000
KS ci ratio: 2.450869e-01	ci left: 2.797024e-03	ci right 3.589682e-03	k: 254	n:80000
PLCB2   80000 perm   19 sec   (4112 perm/sec)   p_kst 3.175000e-03   p_cons 8.470625e-01   p_joint 9.887500e-03

Joint ci ratio: 1.320262e-01	ci left: 9.059220e-03	ci right 1.035046e-02	k: 872	n:90000
Cons ci ratio: 5.541214e-03	ci left: 8.452128e-01	ci right 8.499203e-01	k: 76282	n:90000
KS ci ratio: 2.461003e-01	ci left: 2.465336e-03	ci right 3.167319e-03	k: 252	n:90000
PLCB2   90000 perm   22 sec   (4040 perm/sec)   p_kst 2.800000e-03   p_cons 8.475778e-01   p_joint 9.688889e-03

Joint ci ratio: 1.323972e-01	ci left: 8.114356e-03	ci right 9.274411e-03	k: 868	n:100000
Cons ci ratio: 5.265957e-03	ci left: 8.448845e-01	ci right 8.493553e-01	k: 84713	n:100000
KS ci ratio: 2.339354e-01	ci left: 2.472574e-03	ci right 3.136786e-03	k: 279	n:100000
PLCB2   100000 perm   25 sec   (3974 perm/sec)   p_kst 2.790000e-03   p_cons 8.471300e-01   p_joint 8.680000e-03

Joint ci ratio: 1.303497e-01	ci left: 7.622739e-03	ci right 8.694345e-03	k: 896	n:110000
Cons ci ratio: 5.024817e-03	ci left: 8.447858e-01	ci right 8.490504e-01	k: 93162	n:110000
KS ci ratio: 2.234128e-01	ci left: 2.479195e-03	ci right 3.111109e-03	k: 306	n:110000
PLCB2   110000 perm   28 sec   (3913 perm/sec)   p_kst 2.781818e-03   p_cons 8.469273e-01   p_joint 8.145455e-03

Joint ci ratio: 1.073812e-01	ci left: 1.039320e-02	ci right 1.158061e-02	k: 1317	n:120000
Cons ci ratio: 4.809542e-03	ci left: 8.449507e-01	ci right 8.490325e-01	k: 101640	n:120000
KS ci ratio: 2.129185e-01	ci left: 2.516825e-03	ci right 3.124265e-03	k: 337	n:120000
PLCB2   120000 perm   31 sec   (3854 perm/sec)   p_kst 2.808333e-03   p_cons 8.470000e-01   p_joint 1.097500e-02

Joint ci ratio: 1.096333e-01	ci left: 9.204268e-03	ci right 1.027931e-02	k: 1265	n:130000
Cons ci ratio: 4.625654e-03	ci left: 8.447609e-01	ci right 8.486852e-01	k: 110075	n:130000
KS ci ratio: 2.048931e-01	ci left: 2.520053e-03	ci right 3.102476e-03	k: 364	n:130000
PLCB2   130000 perm   34 sec   (3797 perm/sec)   p_kst 2.800000e-03   p_cons 8.467308e-01   p_joint 9.730769e-03

Joint ci ratio: 1.011482e-01	ci left: 1.007710e-02	ci right 1.115759e-02	k: 1485	n:140000
Cons ci ratio: 4.456936e-03	ci left: 8.448595e-01	ci right 8.486404e-01	k: 118546	n:140000
KS ci ratio: 1.977118e-01	ci left: 2.523188e-03	ci right 3.083434e-03	k: 391	n:140000
PLCB2   140000 perm   37 sec   (3736 perm/sec)   p_kst 2.792857e-03   p_cons 8.467571e-01   p_joint 1.060714e-02

Joint ci ratio: 9.831757e-02	ci left: 9.970804e-03	ci right 1.100825e-02	k: 1572	n:150000
Cons ci ratio: 4.309519e-03	ci left: 8.446993e-01	ci right 8.483540e-01	k: 126980	n:150000
KS ci ratio: 1.898777e-01	ci left: 2.564310e-03	ci right 3.108523e-03	k: 424	n:150000
PLCB2   150000 perm   41 sec   (3675 perm/sec)   p_kst 2.826667e-03   p_cons 8.465333e-01   p_joint 1.048000e-02

Joint ci ratio: 9.866737e-02	ci left: 9.286506e-03	ci right 1.025638e-02	k: 1562	n:160000
Cons ci ratio: 4.172103e-03	ci left: 8.447934e-01	ci right 8.483315e-01	k: 135451	n:160000
KS ci ratio: 1.829067e-01	ci left: 2.600674e-03	ci right 3.130096e-03	k: 457	n:160000
PLCB2   160000 perm   44 sec   (3619 perm/sec)   p_kst 2.856250e-03   p_cons 8.465687e-01   p_joint 9.762500e-03

Joint ci ratio: 8.680767e-02	ci left: 1.133813e-02	ci right 1.237274e-02	k: 2014	n:170000
Cons ci ratio: 4.044754e-03	ci left: 8.450258e-01	ci right 8.484565e-01	k: 143947	n:170000
KS ci ratio: 1.768316e-01	ci left: 2.627458e-03	ci right 3.142668e-03	k: 489	n:170000
PLCB2   170000 perm   48 sec   (3560 perm/sec)   p_kst 2.876471e-03   p_cons 8.467471e-01   p_joint 1.184706e-02

Joint ci ratio: 8.508173e-02	ci left: 1.115939e-02	ci right 1.215643e-02	k: 2097	n:180000
Cons ci ratio: 3.930833e-03	ci left: 8.450719e-01	ci right 8.484058e-01	k: 152414	n:180000
KS ci ratio: 1.714891e-01	ci left: 2.646206e-03	ci right 3.147794e-03	k: 520	n:180000
PLCB2   180000 perm   51 sec   (3499 perm/sec)   p_kst 2.888889e-03   p_cons 8.467444e-01   p_joint 1.165000e-02

Joint ci ratio: 8.568820e-02	ci left: 1.042766e-02	ci right 1.136630e-02	k: 2069	n:190000
Cons ci ratio: 3.826025e-03	ci left: 8.451144e-01	ci right 8.483592e-01	k: 160881	n:190000
KS ci ratio: 1.675189e-01	ci left: 2.632928e-03	ci right 3.119279e-03	k: 545	n:190000
PLCB2   190000 perm   55 sec   (3448 perm/sec)   p_kst 2.868421e-03   p_cons 8.467421e-01   p_joint 1.088947e-02

Joint ci ratio: 8.402581e-02	ci left: 1.031244e-02	ci right 1.122182e-02	k: 2152	n:200000
Cons ci ratio: 3.729392e-03	ci left: 8.451386e-01	ci right 8.483013e-01	k: 169345	n:200000
KS ci ratio: 1.633823e-01	ci left: 2.635485e-03	ci right 3.109106e-03	k: 573	n:200000
PLCB2   200000 perm   59 sec   (3398 perm/sec)   p_kst 2.865000e-03   p_cons 8.467250e-01   p_joint 1.076000e-02

Joint ci ratio: 7.986142e-02	ci left: 1.088964e-02	ci right 1.180011e-02	k: 2381	n:210000
Cons ci ratio: 3.639864e-03	ci left: 8.451519e-01	ci right 8.482385e-01	k: 177807	n:210000
KS ci ratio: 1.591406e-01	ci left: 2.651650e-03	ci right 3.114622e-03	k: 604	n:210000
PLCB2   210000 perm   63 sec   (3353 perm/sec)   p_kst 2.876190e-03   p_cons 8.467000e-01   p_joint 1.133810e-02

Joint ci ratio: 7.852700e-02	ci left: 1.075998e-02	ci right 1.164388e-02	k: 2463	n:220000
Cons ci ratio: 3.555243e-03	ci left: 8.452561e-01	ci right 8.482711e-01	k: 186289	n:220000
KS ci ratio: 1.554582e-01	ci left: 2.657751e-03	ci right 3.110050e-03	k: 633	n:220000
PLCB2   220000 perm   67 sec   (3296 perm/sec)   p_kst 2.877273e-03   p_cons 8.467682e-01   p_joint 1.119545e-02

Joint ci ratio: 7.006664e-02	ci left: 1.295543e-02	ci right 1.390037e-02	k: 3087	n:230000
Cons ci ratio: 3.478067e-03	ci left: 8.452167e-01	ci right 8.481658e-01	k: 194740	n:230000
KS ci ratio: 1.524823e-01	ci left: 2.646703e-03	ci right 3.087712e-03	k: 658	n:230000
PLCB2   230000 perm   71 sec   (3256 perm/sec)   p_kst 2.860870e-03   p_cons 8.466957e-01   p_joint 1.342174e-02

Joint ci ratio: 5.634182e-02	ci left: 1.921349e-02	ci right 2.033148e-02	k: 4744	n:240000
Cons ci ratio: 3.406363e-03	ci left: 8.451311e-01	ci right 8.480189e-01	k: 203179	n:240000
KS ci ratio: 1.491253e-01	ci left: 2.656708e-03	ci right 3.088770e-03	k: 688	n:240000
PLCB2   240000 perm   75 sec   (3218 perm/sec)   p_kst 2.866667e-03   p_cons 8.465792e-01   p_joint 1.976667e-02

Joint ci ratio: 5.784207e-02	ci left: 1.751792e-02	ci right 1.856529e-02	k: 4509	n:250000
Cons ci ratio: 3.338557e-03	ci left: 8.450810e-01	ci right 8.479110e-01	k: 211625	n:250000
KS ci ratio: 1.461847e-01	ci left: 2.658302e-03	ci right 3.081354e-03	k: 716	n:250000
PLCB2   250000 perm   79 sec   (3181 perm/sec)   p_kst 2.864000e-03   p_cons 8.465000e-01   p_joint 1.803600e-02

Joint ci ratio: 5.856010e-02	ci left: 1.644592e-02	ci right 1.744181e-02	k: 4404	n:260000
Cons ci ratio: 3.270235e-03	ci left: 8.453866e-01	ci right 8.481595e-01	k: 220162	n:260000
KS ci ratio: 1.432188e-01	ci left: 2.667268e-03	ci right 3.082398e-03	k: 746	n:260000
PLCB2   260000 perm   83 sec   (3146 perm/sec)   p_kst 2.869231e-03   p_cons 8.467769e-01   p_joint 1.693846e-02

Joint ci ratio: 6.106418e-02	ci left: 1.457405e-02	ci right 1.549566e-02	k: 4058	n:270000
Cons ci ratio: 3.207810e-03	ci left: 8.455176e-01	ci right 8.482379e-01	k: 228658	n:270000
KS ci ratio: 1.408818e-01	ci left: 2.657781e-03	ci right 3.064118e-03	k: 771	n:270000
PLCB2   270000 perm   87 sec   (3111 perm/sec)   p_kst 2.855556e-03   p_cons 8.468815e-01   p_joint 1.502963e-02

Joint ci ratio: 6.000244e-02	ci left: 1.456357e-02	ci right 1.546794e-02	k: 4203	n:280000
Cons ci ratio: 3.150952e-03	ci left: 8.454641e-01	ci right 8.481359e-01	k: 237105	n:280000
KS ci ratio: 1.386555e-01	ci left: 2.649023e-03	ci right 3.047092e-03	k: 796	n:280000
PLCB2   280000 perm   91 sec   (3076 perm/sec)   p_kst 2.842857e-03   p_cons 8.468036e-01   p_joint 1.501071e-02

Joint ci ratio: 6.632078e-02	ci left: 1.150850e-02	ci right 1.230130e-02	k: 3451	n:290000
Cons ci ratio: 3.099277e-03	ci left: 8.452244e-01	ci right 8.478514e-01	k: 245497	n:290000
KS ci ratio: 1.361996e-01	ci left: 2.654240e-03	ci right 3.045455e-03	k: 825	n:290000
PLCB2   290000 perm   95 sec   (3043 perm/sec)   p_kst 2.844828e-03   p_cons 8.465414e-01   p_joint 1.190000e-02

Joint ci ratio: 6.562614e-02	ci left: 1.136745e-02	ci right 1.214202e-02	k: 3525	n:300000
Cons ci ratio: 3.048021e-03	ci left: 8.451750e-01	ci right 8.477583e-01	k: 253941	n:300000
KS ci ratio: 1.336349e-01	ci left: 2.668833e-03	ci right 3.054204e-03	k: 857	n:300000
PLCB2   300000 perm   100 sec   (3010 perm/sec)   p_kst 2.856667e-03   p_cons 8.464700e-01   p_joint 1.175000e-02

Joint ci ratio: 6.496190e-02	ci left: 1.123237e-02	ci right 1.198970e-02	k: 3598	n:310000
Cons ci ratio: 2.999561e-03	ci left: 8.451000e-01	ci right 8.476419e-01	k: 262376	n:310000
KS ci ratio: 1.319553e-01	ci left: 2.651350e-03	ci right 3.029007e-03	k: 879	n:310000
PLCB2   310000 perm   104 sec   (2977 perm/sec)   p_kst 2.835484e-03   p_cons 8.463742e-01   p_joint 1.160645e-02

Joint ci ratio: 6.404439e-02	ci left: 1.120111e-02	ci right 1.194527e-02	k: 3702	n:320000
Cons ci ratio: 2.953411e-03	ci left: 8.450238e-01	ci right 8.475262e-01	k: 270809	n:320000
KS ci ratio: 1.299049e-01	ci left: 2.653129e-03	ci right 3.024715e-03	k: 907	n:320000
PLCB2   320000 perm   109 sec   (2947 perm/sec)   p_kst 2.834375e-03   p_cons 8.462781e-01   p_joint 1.156875e-02

Joint ci ratio: 5.999947e-02	ci left: 1.238640e-02	ci right 1.315553e-02	k: 4213	n:330000
Cons ci ratio: 2.907498e-03	ci left: 8.451166e-01	ci right 8.475803e-01	k: 279296	n:330000
KS ci ratio: 1.281533e-01	ci left: 2.646043e-03	ci right 3.011259e-03	k: 932	n:330000
PLCB2   330000 perm   113 sec   (2917 perm/sec)   p_kst 2.824242e-03   p_cons 8.463515e-01   p_joint 1.276667e-02

Joint ci ratio: 6.163828e-02	ci left: 1.139338e-02	ci right 1.212086e-02	k: 3996	n:340000
Cons ci ratio: 2.864146e-03	ci left: 8.451600e-01	ci right 8.475870e-01	k: 287768	n:340000
KS ci ratio: 1.266033e-01	ci left: 2.633709e-03	ci right 2.992496e-03	k: 955	n:340000
PLCB2   340000 perm   118 sec   (2886 perm/sec)   p_kst 2.808824e-03   p_cons 8.463765e-01   p_joint 1.175294e-02

Joint ci ratio: 6.349845e-02	ci left: 1.042926e-02	ci right 1.111601e-02	k: 3769	n:350000
Cons ci ratio: 2.821375e-03	ci left: 8.453216e-01	ci right 8.477127e-01	k: 296282	n:350000
KS ci ratio: 1.247891e-01	ci left: 2.635945e-03	ci right 2.989510e-03	k: 983	n:350000
PLCB2   350000 perm   123 sec   (2854 perm/sec)   p_kst 2.808571e-03   p_cons 8.465200e-01   p_joint 1.076857e-02

Joint ci ratio: 5.766848e-02	ci left: 1.230663e-02	ci right 1.304013e-02	k: 4561	n:360000
Cons ci ratio: 2.783524e-03	ci left: 8.451873e-01	ci right 8.475460e-01	k: 304693	n:360000
KS ci ratio: 1.228682e-01	ci left: 2.646169e-03	ci right 2.995244e-03	k: 1014	n:360000
PLCB2   360000 perm   128 sec   (2823 perm/sec)   p_kst 2.816667e-03   p_cons 8.463694e-01   p_joint 1.266944e-02

Joint ci ratio: 6.105330e-02	ci left: 1.068237e-02	ci right 1.135775e-02	k: 4076	n:370000
Cons ci ratio: 2.745329e-03	ci left: 8.452341e-01	ci right 8.475604e-01	k: 313168	n:370000
KS ci ratio: 1.217356e-01	ci left: 2.624429e-03	ci right 2.967215e-03	k: 1033	n:370000
PLCB2   370000 perm   133 sec   (2792 perm/sec)   p_kst 2.791892e-03   p_cons 8.464000e-01   p_joint 1.101622e-02

Joint ci ratio: 6.050220e-02	ci left: 1.059561e-02	ci right 1.125924e-02	k: 4151	n:380000
Cons ci ratio: 2.710308e-03	ci left: 8.451203e-01	ci right 8.474165e-01	k: 321583	n:380000
KS ci ratio: 1.201768e-01	ci left: 2.624268e-03	ci right 2.962332e-03	k: 1060	n:380000
PLCB2   380000 perm   138 sec   (2764 perm/sec)   p_kst 2.789474e-03   p_cons 8.462711e-01   p_joint 1.092368e-02

Joint ci ratio: 5.206232e-02	ci left: 1.395503e-02	ci right 1.470349e-02	k: 5587	n:390000
Cons ci ratio: 2.585429e-03	ci left: 8.538473e-01	ci right 8.560602e-01	k: 333433	n:390000
KS ci ratio: 1.190059e-01	ci left: 2.609213e-03	ci right 2.941833e-03	k: 1081	n:390000
PLCB2   390000 perm   143 sec   (2737 perm/sec)   p_kst 2.771795e-03   p_cons 8.549564e-01   p_joint 1.432564e-02

Joint ci ratio: 4.843743e-02	ci left: 1.571963e-02	ci right 1.650240e-02	k: 6443	n:400000
Cons ci ratio: 2.553255e-03	ci left: 8.538273e-01	ci right 8.560126e-01	k: 341969	n:400000
KS ci ratio: 1.170730e-01	ci left: 2.631327e-03	ci right 2.960941e-03	k: 1117	n:400000
PLCB2   400000 perm   148 sec   (2709 perm/sec)   p_kst 2.792500e-03   p_cons 8.549225e-01   p_joint 1.610750e-02

Joint ci ratio: 4.738613e-02	ci left: 1.602790e-02	ci right 1.680823e-02	k: 6730	n:410000
Cons ci ratio: 2.520865e-03	ci left: 8.539454e-01	ci right 8.561032e-01	k: 350561	n:410000
KS ci ratio: 1.160920e-01	ci left: 2.612137e-03	ci right 2.936417e-03	k: 1136	n:410000
PLCB2   410000 perm   153 sec   (2685 perm/sec)   p_kst 2.770732e-03   p_cons 8.550268e-01   p_joint 1.641463e-02

Joint ci ratio: 4.736338e-02	ci left: 1.566739e-02	ci right 1.642979e-02	k: 6739	n:420000
Cons ci ratio: 2.491660e-03	ci left: 8.538599e-01	ci right 8.559924e-01	k: 359070	n:420000
KS ci ratio: 1.149360e-01	ci left: 2.603122e-03	ci right 2.922847e-03	k: 1159	n:420000
PLCB2   420000 perm   158 sec   (2659 perm/sec)   p_kst 2.759524e-03   p_cons 8.549286e-01   p_joint 1.604524e-02

Joint ci ratio: 4.702623e-02	ci left: 1.552822e-02	ci right 1.627832e-02	k: 6837	n:430000
Cons ci ratio: 2.463401e-03	ci left: 8.537831e-01	ci right 8.558912e-01	k: 367581	n:430000
KS ci ratio: 1.130025e-01	ci left: 2.632958e-03	ci right 2.950545e-03	k: 1199	n:430000
PLCB2   430000 perm   163 sec   (2634 perm/sec)   p_kst 2.788372e-03   p_cons 8.548395e-01   p_joint 1.590000e-02

Joint ci ratio: 4.438266e-02	ci left: 1.703367e-02	ci right 1.780906e-02	k: 7664	n:440000
Cons ci ratio: 2.436147e-03	ci left: 8.537031e-01	ci right 8.557876e-01	k: 376089	n:440000
KS ci ratio: 1.117981e-01	ci left: 2.630548e-03	ci right 2.944239e-03	k: 1225	n:440000
PLCB2   440000 perm   169 sec   (2609 perm/sec)   p_kst 2.784091e-03   p_cons 8.547477e-01   p_joint 1.741818e-02

Joint ci ratio: 4.505679e-02	ci left: 1.616937e-02	ci right 1.691688e-02	k: 7443	n:450000
Cons ci ratio: 2.409260e-03	ci left: 8.536803e-01	ci right 8.557417e-01	k: 384621	n:450000
KS ci ratio: 1.106314e-01	ci left: 2.628261e-03	ci right 2.938196e-03	k: 1251	n:450000
PLCB2   450000 perm   174 sec   (2583 perm/sec)   p_kst 2.780000e-03   p_cons 8.547133e-01   p_joint 1.654000e-02

Joint ci ratio: 4.559397e-02	ci left: 1.545450e-02	ci right 1.617770e-02	k: 7274	n:460000
Cons ci ratio: 2.382848e-03	ci left: 8.537001e-01	ci right 8.557389e-01	k: 393172	n:460000
KS ci ratio: 1.092436e-01	ci left: 2.638778e-03	ci right 2.945798e-03	k: 1283	n:460000
PLCB2   460000 perm   180 sec   (2555 perm/sec)   p_kst 2.789130e-03   p_cons 8.547217e-01   p_joint 1.581304e-02

Joint ci ratio: 4.509447e-02	ci left: 1.546646e-02	ci right 1.618208e-02	k: 7436	n:470000
Cons ci ratio: 2.357326e-03	ci left: 8.537149e-01	ci right 8.557318e-01	k: 401721	n:470000
KS ci ratio: 1.078657e-01	ci left: 2.650942e-03	ci right 2.955239e-03	k: 1316	n:470000
PLCB2   470000 perm   186 sec   (2533 perm/sec)   p_kst 2.800000e-03   p_cons 8.547255e-01   p_joint 1.582128e-02

Joint ci ratio: 4.672727e-02	ci left: 1.411223e-02	ci right 1.478948e-02	k: 6935	n:480000
Cons ci ratio: 2.333488e-03	ci left: 8.536351e-01	ci right 8.556314e-01	k: 410225	n:480000
KS ci ratio: 1.065782e-01	ci left: 2.660593e-03	ci right 2.962125e-03	k: 1348	n:480000
PLCB2   480000 perm   191 sec   (2510 perm/sec)   p_kst 2.808333e-03   p_cons 8.546354e-01   p_joint 1.444792e-02

Joint ci ratio: 4.848354e-02	ci left: 1.284601e-02	ci right 1.348630e-02	k: 6450	n:490000
Cons ci ratio: 2.310035e-03	ci left: 8.535935e-01	ci right 8.555696e-01	k: 418746	n:490000
KS ci ratio: 1.063051e-01	ci left: 2.620198e-03	ci right 2.916342e-03	k: 1355	n:490000
PLCB2   490000 perm   197 sec   (2487 perm/sec)   p_kst 2.765306e-03   p_cons 8.545837e-01   p_joint 1.316327e-02

Joint ci ratio: 4.804677e-02	ci left: 1.282223e-02	ci right 1.345543e-02	k: 6568	n:500000
Cons ci ratio: 2.287863e-03	ci left: 8.534895e-01	ci right 8.554464e-01	k: 427235	n:500000
KS ci ratio: 1.051481e-01	ci left: 2.626208e-03	ci right 2.919601e-03	k: 1385	n:500000
PLCB2   500000 perm   203 sec   (2465 perm/sec)   p_kst 2.770000e-03   p_cons 8.544700e-01   p_joint 1.313600e-02

Joint ci ratio: 4.630609e-02	ci left: 1.353588e-02	ci right 1.417946e-02	k: 7066	n:510000
Cons ci ratio: 2.265406e-03	ci left: 8.534900e-01	ci right 8.554276e-01	k: 435775	n:510000
KS ci ratio: 1.042497e-01	ci left: 2.620539e-03	ci right 2.910645e-03	k: 1409	n:510000
PLCB2   510000 perm   209 sec   (2445 perm/sec)   p_kst 2.762745e-03   p_cons 8.544608e-01   p_joint 1.385490e-02

Joint ci ratio: 4.477936e-02	ci left: 1.419776e-02	ci right 1.484997e-02	k: 7551	n:520000
Cons ci ratio: 2.243962e-03	ci left: 8.534500e-01	ci right 8.553691e-01	k: 444294	n:520000
KS ci ratio: 1.035189e-01	ci left: 2.607606e-03	ci right 2.894133e-03	k: 1429	n:520000
PLCB2   520000 perm   215 sec   (2424 perm/sec)   p_kst 2.748077e-03   p_cons 8.544115e-01   p_joint 1.452115e-02

Joint ci ratio: 4.441417e-02	ci left: 1.416309e-02	ci right 1.480827e-02	k: 7676	n:530000
Cons ci ratio: 2.222660e-03	ci left: 8.534627e-01	ci right 8.553636e-01	k: 452840	n:530000
KS ci ratio: 1.026968e-01	ci left: 2.600682e-03	ci right 2.884042e-03	k: 1452	n:530000
PLCB2   530000 perm   221 sec   (2403 perm/sec)   p_kst 2.739623e-03   p_cons 8.544151e-01   p_joint 1.448302e-02

Joint ci ratio: 4.403772e-02	ci left: 1.414255e-02	ci right 1.478119e-02	k: 7808	n:540000
Cons ci ratio: 2.202461e-03	ci left: 8.534175e-01	ci right 8.553010e-01	k: 461355	n:540000
KS ci ratio: 1.017213e-01	ci left: 2.603048e-03	ci right 2.883811e-03	k: 1480	n:540000
PLCB2   540000 perm   227 sec   (2383 perm/sec)   p_kst 2.740741e-03   p_cons 8.543611e-01   p_joint 1.445926e-02

Joint ci ratio: 4.379396e-02	ci left: 1.404364e-02	ci right 1.467422e-02	k: 7896	n:550000
Cons ci ratio: 2.182133e-03	ci left: 8.534505e-01	ci right 8.553167e-01	k: 469912	n:550000
KS ci ratio: 1.009073e-01	ci left: 2.598250e-03	ci right 2.876120e-03	k: 1504	n:550000
PLCB2   550000 perm   233 sec   (2362 perm/sec)   p_kst 2.734545e-03   p_cons 8.543855e-01   p_joint 1.435636e-02

Joint ci ratio: 4.496921e-02	ci left: 1.308635e-02	ci right 1.369013e-02	k: 7496	n:560000
Cons ci ratio: 2.162622e-03	ci left: 8.534520e-01	ci right 8.553015e-01	k: 478452	n:560000
KS ci ratio: 9.962366e-02	ci left: 2.619751e-03	ci right 2.896148e-03	k: 1543	n:560000
PLCB2   560000 perm   239 sec   (2342 perm/sec)   p_kst 2.755357e-03   p_cons 8.543786e-01   p_joint 1.338571e-02

Outputting figure to mutsig2_images.part000000000132/PLCB2.3_3686_560000_0.0027554_0.85438_0.013386.png
                gene_name: PLCB2
               theta_stop: 0.100 
                    nperm: 560000 
                     p_ks: 0.0028 
        ci_ks_bounds_left: 0.0026 
       ci_ks_bounds_right: 0.0029 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 74 percent done.
PLCXD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.697687e-03	ci left: 9.376532e-01	ci right 9.468871e-01	k: 9424	n:10000
KS ci ratio: 7.788970e-03	ci left: 9.581703e-01	ci right 9.657575e-01	k: 9621	n:10000
PLCXD2   10000 perm   2 sec   (5304 perm/sec)   p_kst 9.621000e-01   p_cons 9.424000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLCXD2.3_1151_10000_0.9621_0.9424_1.png
                gene_name: PLCXD2
               theta_stop: 0.0097 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
PLCXD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.002586e-02	ci left: 4.796566e-01	ci right 4.993495e-01	k: 4895	n:10000
KS ci ratio: 1.343746e-02	ci left: 8.887237e-01	ci right 9.008452e-01	k: 8949	n:10000
PLCXD3   10000 perm   2 sec   (6353 perm/sec)   p_kst 8.949000e-01   p_cons 4.895000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLCXD3.3_978_10000_0.8949_0.4895_1.png
                gene_name: PLCXD3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
PKM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.931779e-02	ci left: 1.542387e-01	ci right 1.687591e-01	k: 1614	n:10000
KS ci ratio: 5.980736e-02	ci left: 2.914241e-01	ci right 3.094923e-01	k: 3004	n:10000
PKM2   10000 perm   2 sec   (6140 perm/sec)   p_kst 3.004000e-01   p_cons 1.614000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PKM2.2_1807_10000_0.3004_0.1614_1.png
                gene_name: PKM2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
PKN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.042473e-02	ci left: 2.871625e-01	ci right 3.051564e-01	k: 2961	n:10000
Cons ci ratio: 6.476759e-02	ci left: 2.593375e-01	ci right 2.767978e-01	k: 2680	n:10000
KS ci ratio: 2.294549e-02	ci left: 7.361346e-01	ci right 7.533227e-01	k: 7448	n:10000
PKN3   10000 perm   2 sec   (5944 perm/sec)   p_kst 7.448000e-01   p_cons 2.680000e-01   p_joint 2.961000e-01

Outputting figure to mutsig2_images.part000000000132/PKN3.2_2758_10000_0.7448_0.268_0.2961.png
                gene_name: PKN3
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 81 percent done.
PKP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.434278e-01	ci left: 6.449503e-02	ci right 7.455749e-02	k: 694	n:10000
Cons ci ratio: 1.356182e-01	ci left: 7.184865e-02	ci right 8.239926e-02	k: 770	n:10000
KS ci ratio: 2.649463e-02	ci left: 6.772033e-01	ci right 6.954880e-01	k: 6864	n:10000
PKP1   10000 perm   2 sec   (5838 perm/sec)   p_kst 6.864000e-01   p_cons 7.700000e-02   p_joint 6.940000e-02

Joint ci ratio: 8.813772e-02	ci left: 8.601960e-02	ci right 9.400006e-02	k: 1799	n:20000
Cons ci ratio: 9.519797e-02	ci left: 7.441774e-02	ci right 8.190544e-02	k: 1562	n:20000
KS ci ratio: 1.849836e-02	ci left: 6.853983e-01	ci right 6.982459e-01	k: 13837	n:20000
PKP1   20000 perm   4 sec   (5181 perm/sec)   p_kst 6.918500e-01   p_cons 7.810000e-02   p_joint 8.995000e-02

Outputting figure to mutsig2_images.part000000000132/PKP1.2_2300_20000_0.69185_0.0781_0.08995.png
                gene_name: PKP1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.094 

Current progress: 83 percent done.
PLA2G15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.672096e-02	ci left: 2.479627e-01	ci right 2.651793e-01	k: 2565	n:10000
KS ci ratio: 1.908499e-02	ci left: 8.005470e-01	ci right 8.160730e-01	k: 8084	n:10000
PLA2G15   10000 perm   2 sec   (6530 perm/sec)   p_kst 8.084000e-01   p_cons 2.565000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLA2G15.2_1263_10000_0.8084_0.2565_1.png
                gene_name: PLA2G15
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
PLA2G4E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.399040e-02	ci left: 7.186579e-01	ci right 7.362094e-01	k: 7275	n:10000
Cons ci ratio: 4.545732e-02	ci left: 4.166796e-01	ci right 4.361633e-01	k: 4264	n:10000
KS ci ratio: 8.713937e-02	ci left: 1.609163e-01	ci right 1.756775e-01	k: 1682	n:10000
PLA2G4E   10000 perm   2 sec   (5684 perm/sec)   p_kst 1.682000e-01   p_cons 4.264000e-01   p_joint 7.275000e-01

Outputting figure to mutsig2_images.part000000000132/PLA2G4E.2_2596_10000_0.1682_0.4264_0.7275.png
                gene_name: PLA2G4E
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 86 percent done.
PLA2G4F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.426517e-02	ci left: 1.703508e-01	ci right 1.854373e-01	k: 1778	n:10000
Cons ci ratio: 3.283636e-02	ci left: 5.778774e-01	ci right 5.972716e-01	k: 5876	n:10000
KS ci ratio: 1.876749e-01	ci left: 3.786599e-02	ci right 4.580373e-02	k: 417	n:10000
PLA2G4F   10000 perm   2 sec   (5992 perm/sec)   p_kst 4.170000e-02   p_cons 5.876000e-01   p_joint 1.778000e-01

Joint ci ratio: 5.269881e-02	ci left: 2.109571e-01	ci right 2.224254e-01	k: 4333	n:20000
Cons ci ratio: 2.318183e-02	ci left: 5.815422e-01	ci right 5.952321e-01	k: 11768	n:20000
KS ci ratio: 1.320512e-01	ci left: 3.940703e-02	ci right 4.502705e-02	k: 843	n:20000
PLA2G4F   20000 perm   4 sec   (5345 perm/sec)   p_kst 4.215000e-02   p_cons 5.884000e-01   p_joint 2.166500e-01

Joint ci ratio: 4.384325e-02	ci left: 2.057662e-01	ci right 2.150233e-01	k: 6311	n:30000
Cons ci ratio: 1.893736e-02	ci left: 5.825724e-01	ci right 5.937438e-01	k: 17645	n:30000
KS ci ratio: 1.089481e-01	ci left: 3.910865e-02	ci right 4.364738e-02	k: 1240	n:30000
PLA2G4F   30000 perm   6 sec   (5098 perm/sec)   p_kst 4.133333e-02   p_cons 5.881667e-01   p_joint 2.103667e-01

Joint ci ratio: 2.987541e-02	ci left: 2.963825e-01	ci right 3.053964e-01	k: 12035	n:40000
Cons ci ratio: 1.647554e-02	ci left: 5.811044e-01	ci right 5.907831e-01	k: 23438	n:40000
KS ci ratio: 9.521588e-02	ci left: 3.871123e-02	ci right 4.260581e-02	k: 1625	n:40000
PLA2G4F   40000 perm   8 sec   (4939 perm/sec)   p_kst 4.062500e-02   p_cons 5.859500e-01   p_joint 3.008750e-01

Outputting figure to mutsig2_images.part000000000132/PLA2G4F.2_2630_40000_0.040625_0.58595_0.30088.png
                gene_name: PLA2G4F
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 88 percent done.
PLAC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.084326e-02	ci left: 4.695657e-01	ci right 4.892463e-01	k: 4794	n:10000
Cons ci ratio: 5.506921e-02	ci left: 3.269398e-01	ci right 3.455557e-01	k: 3362	n:10000
KS ci ratio: 1.189849e-02	ci left: 9.100826e-01	ci right 9.210739e-01	k: 9157	n:10000
PLAC8   10000 perm   1 sec   (7071 perm/sec)   p_kst 9.157000e-01   p_cons 3.362000e-01   p_joint 4.794000e-01

Outputting figure to mutsig2_images.part000000000132/PLAC8.2_360_10000_0.9157_0.3362_0.4794.png
                gene_name: PLAC8
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 90 percent done.
PLBD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.902845e-02	ci left: 6.363347e-01	ci right 6.551803e-01	k: 6458	n:10000
KS ci ratio: 6.259518e-02	ci left: 2.727991e-01	ci right 2.905282e-01	k: 2816	n:10000
PLBD2   10000 perm   2 sec   (6295 perm/sec)   p_kst 2.816000e-01   p_cons 6.458000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLBD2.2_1818_10000_0.2816_0.6458_1.png
                gene_name: PLBD2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
PLCD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.048442e-02	ci left: 6.135171e-01	ci right 6.326112e-01	k: 6231	n:10000
KS ci ratio: 1.844185e-02	ci left: 8.111081e-01	ci right 8.263058e-01	k: 8188	n:10000
PLCD3   10000 perm   2 sec   (5853 perm/sec)   p_kst 8.188000e-01   p_cons 6.231000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLCD3.2_2429_10000_0.8188_0.6231_1.png
                gene_name: PLCD3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
PLCD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.464415e-02	ci left: 5.516076e-01	ci right 5.711566e-01	k: 5614	n:10000
Cons ci ratio: 5.099836e-02	ci left: 3.618190e-01	ci right 3.808560e-01	k: 3713	n:10000
KS ci ratio: 4.564363e-02	ci left: 4.146860e-01	ci right 4.341580e-01	k: 4244	n:10000
PLCD4   10000 perm   2 sec   (5844 perm/sec)   p_kst 4.244000e-01   p_cons 3.713000e-01   p_joint 5.614000e-01

Outputting figure to mutsig2_images.part000000000132/PLCD4.2_2349_10000_0.4244_0.3713_0.5614.png
                gene_name: PLCD4
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 95 percent done.
PLD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.242237e-02	ci left: 4.506935e-01	ci right 4.703295e-01	k: 4605	n:10000
Cons ci ratio: 3.729637e-02	ci left: 5.149562e-01	ci right 5.346293e-01	k: 5248	n:10000
KS ci ratio: 6.988973e-02	ci left: 2.308658e-01	ci right 2.476864e-01	k: 2392	n:10000
PLD2   10000 perm   2 sec   (5621 perm/sec)   p_kst 2.392000e-01   p_cons 5.248000e-01   p_joint 4.605000e-01

Outputting figure to mutsig2_images.part000000000132/PLD2.2_2898_10000_0.2392_0.5248_0.4605.png
                gene_name: PLD2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 97 percent done.
PLEKHA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.089156e-02	ci left: 7.705345e-01	ci right 7.869028e-01	k: 7788	n:10000
KS ci ratio: 4.661919e-02	ci left: 4.044221e-01	ci right 4.238280e-01	k: 4141	n:10000
PLEKHA1   10000 perm   2 sec   (6388 perm/sec)   p_kst 4.141000e-01   p_cons 7.788000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000132/PLEKHA1.2_1259_10000_0.4141_0.7788_1.png
                gene_name: PLEKHA1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
PLEKHA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.837274e-02	ci left: 3.866946e-01	ci right 4.059658e-01	k: 3963	n:10000
Cons ci ratio: 6.281241e-02	ci left: 2.714129e-01	ci right 2.891153e-01	k: 2802	n:10000
KS ci ratio: 6.421114e-02	ci left: 2.627020e-01	ci right 2.802313e-01	k: 2714	n:10000
PLEKHA2   10000 perm   2 sec   (6405 perm/sec)   p_kst 2.714000e-01   p_cons 2.802000e-01   p_joint 3.963000e-01

Outputting figure to mutsig2_images.part000000000132/PLEKHA2.2_1323_10000_0.2714_0.2802_0.3963.png
                gene_name: PLEKHA2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000132
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 132 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1709>
Subject: Job 9894082: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1709>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000133> was used as the working directory.
Started at Sat Oct  6 00:24:49 2012
Results reported at Sat Oct  6 00:33:20 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000133.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000133.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 133  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000133.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    532.33 sec.
    Max Memory :      3528 MB
    Max Swap   :      5971 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
133
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 133
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 133: processing genes 11901 - 11990
Calculating significance of each gene.
Using projection method.
11901	PLEKHA3	1.727912e-01
11902	PLEKHA4	5.277348e-01
11903	PLEKHA5	5.514753e-01
11904	PLEKHA6	3.913805e-01
11905	PLEKHA7	7.517427e-01
11906	PLEKHA8	6.353903e-01
11907	PLEKHA9	9.065649e-02
11908	PLEKHB1	6.838810e-01
11909	PLEKHB2	7.024746e-01
11910	PLEKHF1	1
11911	PLEKHF2	5.860940e-01
11912	PLEKHG1	3.370253e-01
11913	PLEKHG2	9.978680e-01
11914	PLEKHG3	9.972002e-01
11915	PLEKHG4	9.194195e-01
11916	PLEKHG4B	7.665392e-01
11917	PLEKHG5	1
11918	PLEKHG6	8.545951e-01
11919	PLEKHG7	5.884300e-01
11920	PLEKHH1	9.804358e-01
11921	PLEKHH2	3.498887e-01
11922	PLEKHH3	8.768347e-01
11923	PLEKHJ1	1
11924	PLEKHM1	9.938692e-01
11925	PLEKHM2	9.958459e-01
11926	PLEKHM3	9.622021e-01
11927	PLEKHN1	1
11928	PLEKHO1	2.271043e-01
11929	PLEKHO2	6.376934e-02
11930	PLG	6.393591e-02
11931	PLGLB1	1
In gene PLGLB2 the following bins exceed PROBCAP:
    COAD-AA-3667	categ 6	N = 216     n = 1	mu =   3.29e-07
11932	PLGLB2	3.779185e-02
11933	PLIN1	5.235133e-01
11934	PLIN2	7.253703e-01
11935	PLIN3	1
11936	PLIN4	7.075028e-01
11937	PLIN5	1
11938	PLK1	2.709500e-02
11939	PLK1S1	1.530920e-01
11940	PLK2	2.571266e-01
11941	PLK3	8.081270e-01
11942	PLK4	1.001943e-01
11943	PLLP	1
11944	PLN	2.487120e-01
11945	PLOD1	3.482416e-01
11946	PLOD2	2.701587e-01
11947	PLOD3	4.057006e-01
11948	PLP1	1.762564e-01
11949	PLP2	1
11950	PLRG1	5.270457e-01
11951	PLS1	5.385985e-01
11952	PLS3	4.142162e-01
11953	PLSCR1	3.482428e-01
11954	PLSCR2	3.839060e-03
11955	PLSCR3	2.723428e-01
11956	PLSCR4	8.001416e-02
11957	PLSCR5	6.076121e-01
11958	PLTP	2.289467e-01
11959	PLUNC	7.439600e-02
11960	PLVAP	9.519412e-01
11961	PLXDC1	9.974985e-02
11962	PLXDC2	1.575579e-01
11963	PLXNA1	9.998265e-01
11964	PLXNA2	9.041834e-01
11965	PLXNA3	9.978414e-01
In gene PLXNA4 the following bins exceed PROBCAP:
    COAD-AA-3851	categ 6	N = 6111    n = 1	mu =   3.95e-07
11966	PLXNA4	1.228116e-01
11967	PLXNB1	9.419257e-01
11968	PLXNB2	9.993498e-01
In gene PLXNB3 the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 4567    n = 1	mu =   4.60e-07
11969	PLXNB3	8.907512e-01
11970	PLXNC1	6.515553e-01
11971	PLXND1	5.696365e-01
11972	PM20D1	1.361816e-01
11973	PM20D2	3.515818e-01
11974	PMAIP1	1
11975	PMCH	3.988087e-01
11976	PMEPA1	6.804212e-01
11977	PMF1	3.505069e-01
11978	PMFBP1	2.270939e-01
11979	PML	9.053053e-01
11980	PMM1	2.426334e-01
11981	PMM2	1
11982	PMP2	2.476973e-01
11983	PMP22	9.627439e-02
11984	PMPCA	9.307024e-01
11985	PMPCB	7.708777e-01
11986	PMS1	7.891139e-01
11987	PMS2	2.068099e-01
11988	PMVK	6.095066e-01
11989	PNCK	8.577993e-01
11990	PNKD	1
Done

Running MutSig 2:
Scatter job 133: processing genes 11901 - 11990
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PLXNA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.312847e-02	ci left: 8.931325e-01	ci right 9.050339e-01	k: 8992	n:10000
KS ci ratio: 9.197123e-03	ci left: 9.433622e-01	ci right 9.521746e-01	k: 9479	n:10000
PLXNA4   10000 perm   3 sec   (3905 perm/sec)   p_kst 9.479000e-01   p_cons 8.992000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PLXNA4.28_6123_10000_0.9479_0.8992_1.png
                gene_name: PLXNA4
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
PLXND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.369350e-02	ci left: 1.723174e-01	ci right 1.874696e-01	k: 1798	n:10000
Cons ci ratio: 1.705275e-02	ci left: 8.335820e-01	ci right 8.480189e-01	k: 8409	n:10000
KS ci ratio: 1.474582e-01	ci left: 6.111415e-02	ci right 7.094050e-02	k: 659	n:10000
PLXND1   10000 perm   2 sec   (4373 perm/sec)   p_kst 6.590000e-02   p_cons 8.409000e-01   p_joint 1.798000e-01

Joint ci ratio: 6.305346e-02	ci left: 1.568193e-01	ci right 1.670792e-01	k: 3238	n:20000
Cons ci ratio: 1.277777e-02	ci left: 8.194090e-01	ci right 8.299965e-01	k: 16495	n:20000
KS ci ratio: 1.063564e-01	ci left: 6.020772e-02	ci right 6.701982e-02	k: 1271	n:20000
PLXND1   20000 perm   5 sec   (4000 perm/sec)   p_kst 6.355000e-02   p_cons 8.247500e-01   p_joint 1.619000e-01

Joint ci ratio: 6.145235e-02	ci left: 1.157510e-01	ci right 1.231228e-01	k: 3582	n:30000
Cons ci ratio: 1.043588e-02	ci left: 8.203157e-01	ci right 8.289546e-01	k: 24740	n:30000
KS ci ratio: 8.713328e-02	ci left: 6.043968e-02	ci right 6.597862e-02	k: 1895	n:30000
PLXND1   30000 perm   8 sec   (3861 perm/sec)   p_kst 6.316667e-02   p_cons 8.246667e-01   p_joint 1.194000e-01

Outputting figure to mutsig2_images.part000000000133/PLXND1.13_5922_30000_0.063167_0.82467_0.1194.png
                gene_name: PLXND1
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 3 percent done.
PLEKHH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.664360e-02	ci left: 5.237637e-01	ci right 5.434167e-01	k: 5336	n:10000
Cons ci ratio: 4.920140e-02	ci left: 3.786320e-01	ci right 3.978331e-01	k: 3882	n:10000
KS ci ratio: 4.111420e-02	ci left: 4.662695e-01	ci right 4.859444e-01	k: 4761	n:10000
PLEKHH2   10000 perm   2 sec   (4247 perm/sec)   p_kst 4.761000e-01   p_cons 3.882000e-01   p_joint 5.336000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHH2.11_4598_10000_0.4761_0.3882_0.5336.png
                gene_name: PLEKHH2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 5 percent done.
PLG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.210389e-02	ci left: 2.759680e-01	ci right 2.937575e-01	k: 2848	n:10000
Cons ci ratio: 7.906570e-02	ci left: 1.894406e-01	ci right 2.051361e-01	k: 1972	n:10000
KS ci ratio: 6.284356e-02	ci left: 2.712149e-01	ci right 2.889134e-01	k: 2800	n:10000
PLG   10000 perm   2 sec   (5329 perm/sec)   p_kst 2.800000e-01   p_cons 1.972000e-01   p_joint 2.848000e-01

Outputting figure to mutsig2_images.part000000000133/PLG.9_2513_10000_0.28_0.1972_0.2848.png
                gene_name: PLG
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 7 percent done.
PLXNC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.902845e-02	ci left: 6.363347e-01	ci right 6.551803e-01	k: 6458	n:10000
Cons ci ratio: 1.274153e-02	ci left: 8.985712e-01	ci right 9.101920e-01	k: 9045	n:10000
KS ci ratio: 5.812920e-02	ci left: 3.034210e-01	ci right 3.216883e-01	k: 3125	n:10000
PLXNC1   10000 perm   2 sec   (4949 perm/sec)   p_kst 3.125000e-01   p_cons 9.045000e-01   p_joint 6.458000e-01

Outputting figure to mutsig2_images.part000000000133/PLXNC1.9_4831_10000_0.3125_0.9045_0.6458.png
                gene_name: PLXNC1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 8 percent done.
PLK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.049610e-01	ci left: 1.159392e-01	ci right 1.288817e-01	k: 1223	n:10000
Cons ci ratio: 7.148093e-02	ci left: 2.228673e-01	ci right 2.394896e-01	k: 2311	n:10000
KS ci ratio: 1.080520e-01	ci left: 1.099814e-01	ci right 1.226430e-01	k: 1162	n:10000
PLK1   10000 perm   2 sec   (5080 perm/sec)   p_kst 1.162000e-01   p_cons 2.311000e-01   p_joint 1.223000e-01

Joint ci ratio: 8.643344e-02	ci left: 8.920534e-02	ci right 9.731335e-02	k: 1864	n:20000
Cons ci ratio: 5.055938e-02	ci left: 2.252228e-01	ci right 2.369555e-01	k: 4621	n:20000
KS ci ratio: 7.694953e-02	ci left: 1.104132e-01	ci right 1.192991e-01	k: 2296	n:20000
PLK1   20000 perm   5 sec   (4386 perm/sec)   p_kst 1.148000e-01   p_cons 2.310500e-01   p_joint 9.320000e-02

Outputting figure to mutsig2_images.part000000000133/PLK1.8_1852_20000_0.1148_0.23105_0.0932.png
                gene_name: PLK1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.097 

Current progress: 10 percent done.
PLXNA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.384994e-02	ci left: 4.343291e-01	ci right 4.539035e-01	k: 4441	n:10000
Cons ci ratio: 9.723386e-02	ci left: 1.329609e-01	ci right 1.466496e-01	k: 1397	n:10000
KS ci ratio: 1.602799e-02	ci left: 8.497808e-01	ci right 8.636107e-01	k: 8568	n:10000
PLXNA2   10000 perm   2 sec   (4137 perm/sec)   p_kst 8.568000e-01   p_cons 1.397000e-01   p_joint 4.441000e-01

Outputting figure to mutsig2_images.part000000000133/PLXNA2.8_5809_10000_0.8568_0.1397_0.4441.png
                gene_name: PLXNA2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 12 percent done.
PLEKHG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.215805e-02	ci left: 1.460943e-01	ci right 1.603084e-01	k: 1531	n:10000
Cons ci ratio: 1.612434e-01	ci left: 5.128492e-02	ci right 6.037601e-02	k: 557	n:10000
KS ci ratio: 3.489098e-02	ci left: 5.481004e-01	ci right 5.676658e-01	k: 5579	n:10000
PLEKHG1   10000 perm   2 sec   (5029 perm/sec)   p_kst 5.579000e-01   p_cons 5.570000e-02   p_joint 1.531000e-01

Joint ci ratio: 5.681600e-02	ci left: 1.867592e-01	ci right 1.977305e-01	k: 3844	n:20000
Cons ci ratio: 1.099548e-01	ci left: 5.645556e-02	ci right 6.307314e-02	k: 1194	n:20000
KS ci ratio: 2.455590e-02	ci left: 5.533376e-01	ci right 5.671448e-01	k: 11205	n:20000
PLEKHG1   20000 perm   4 sec   (4576 perm/sec)   p_kst 5.602500e-01   p_cons 5.970000e-02   p_joint 1.922000e-01

Joint ci ratio: 4.279752e-02	ci left: 2.138347e-01	ci right 2.232198e-01	k: 6555	n:30000
Cons ci ratio: 9.030195e-02	ci left: 5.642509e-02	ci right 6.179402e-02	k: 1772	n:30000
KS ci ratio: 1.986035e-02	ci left: 5.593006e-01	ci right 5.705535e-01	k: 16948	n:30000
PLEKHG1   30000 perm   7 sec   (4396 perm/sec)   p_kst 5.649333e-01   p_cons 5.906667e-02   p_joint 2.185000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHG1.7_4218_30000_0.56493_0.059067_0.2185.png
                gene_name: PLEKHG1
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 14 percent done.
PLK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131817e-01	ci left: 1.010066e-01	ci right 1.132234e-01	k: 1070	n:10000
Cons ci ratio: 5.546629e-02	ci left: 3.237627e-01	ci right 3.423347e-01	k: 3330	n:10000
KS ci ratio: 1.350497e-01	ci left: 7.242987e-02	ci right 8.301768e-02	k: 776	n:10000
PLK2   10000 perm   2 sec   (4943 perm/sec)   p_kst 7.760000e-02   p_cons 3.330000e-01   p_joint 1.070000e-01

Joint ci ratio: 6.872731e-02	ci left: 1.350709e-01	ci right 1.447341e-01	k: 2797	n:20000
Cons ci ratio: 3.996491e-02	ci left: 3.182609e-01	ci right 3.312901e-01	k: 6495	n:20000
KS ci ratio: 9.480375e-02	ci left: 7.500461e-02	ci right 8.251839e-02	k: 1574	n:20000
PLK2   20000 perm   4 sec   (4475 perm/sec)   p_kst 7.870000e-02   p_cons 3.247500e-01   p_joint 1.398500e-01

Outputting figure to mutsig2_images.part000000000133/PLK2.7_2114_20000_0.0787_0.32475_0.13985.png
                gene_name: PLK2
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 15 percent done.
PLK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.820846e-02	ci left: 6.494124e-01	ci right 6.680951e-01	k: 6588	n:10000
KS ci ratio: 1.491369e-02	ci left: 8.669281e-01	ci right 8.800535e-01	k: 8736	n:10000
PLK4   10000 perm   2 sec   (5235 perm/sec)   p_kst 8.736000e-01   p_cons 6.588000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PLK4.7_2977_10000_0.8736_0.6588_1.png
                gene_name: PLK4
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
PLTP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.425286e-02	ci left: 3.335933e-01	ci right 3.522982e-01	k: 3429	n:10000
Cons ci ratio: 3.105821e-02	ci left: 6.046775e-01	ci right 6.238559e-01	k: 6143	n:10000
KS ci ratio: 8.516918e-02	ci left: 1.673034e-01	ci right 1.822866e-01	k: 1747	n:10000
PLTP   10000 perm   2 sec   (5815 perm/sec)   p_kst 1.747000e-01   p_cons 6.143000e-01   p_joint 3.429000e-01

Outputting figure to mutsig2_images.part000000000133/PLTP.7_1542_10000_0.1747_0.6143_0.3429.png
                gene_name: PLTP
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 19 percent done.
PLEKHA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.621882e-02	ci left: 5.295704e-01	ci right 5.492067e-01	k: 5394	n:10000
Cons ci ratio: 2.999325e-02	ci left: 6.211539e-01	ci right 6.401699e-01	k: 6307	n:10000
KS ci ratio: 5.180519e-02	ci left: 3.545604e-01	ci right 3.735189e-01	k: 3640	n:10000
PLEKHA6   10000 perm   2 sec   (5031 perm/sec)   p_kst 3.640000e-01   p_cons 6.307000e-01   p_joint 5.394000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHA6.6_3227_10000_0.364_0.6307_0.5394.png
                gene_name: PLEKHA6
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 20 percent done.
PLEKHA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.853744e-02	ci left: 3.004459e-01	ci right 3.186652e-01	k: 3095	n:10000
Cons ci ratio: 1.439852e-01	ci left: 6.401182e-02	ci right 7.404101e-02	k: 689	n:10000
KS ci ratio: 3.444763e-02	ci left: 5.544138e-01	ci right 5.739488e-01	k: 5642	n:10000
PLEKHA9   10000 perm   2 sec   (5951 perm/sec)   p_kst 5.642000e-01   p_cons 6.890000e-02   p_joint 3.095000e-01

Joint ci ratio: 5.722166e-02	ci left: 1.845834e-01	ci right 1.955068e-01	k: 3800	n:20000
Cons ci ratio: 9.977223e-02	ci left: 6.806427e-02	ci right 7.526086e-02	k: 1432	n:20000
KS ci ratio: 2.464821e-02	ci left: 5.514848e-01	ci right 5.652982e-01	k: 11168	n:20000
PLEKHA9   20000 perm   4 sec   (5340 perm/sec)   p_kst 5.584000e-01   p_cons 7.160000e-02   p_joint 1.900000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHA9.6_1180_20000_0.5584_0.0716_0.19.png
                gene_name: PLEKHA9
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 22 percent done.
PLEKHG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.746352e-02	ci left: 2.438103e-01	ci right 2.609341e-01	k: 2523	n:10000
Cons ci ratio: 1.199415e-01	ci left: 9.068353e-02	ci right 1.023527e-01	k: 964	n:10000
KS ci ratio: 3.290422e-03	ci left: 9.912756e-01	ci right 9.946275e-01	k: 9931	n:10000
PLEKHG4   10000 perm   2 sec   (5246 perm/sec)   p_kst 9.931000e-01   p_cons 9.640000e-02   p_joint 2.523000e-01

Joint ci ratio: 4.771062e-02	ci left: 2.462919e-01	ci right 2.583802e-01	k: 5046	n:20000
Cons ci ratio: 8.857097e-02	ci left: 8.523565e-02	ci right 9.318425e-02	k: 1783	n:20000
KS ci ratio: 2.488890e-03	ci left: 9.907200e-01	ci right 9.932338e-01	k: 19841	n:20000
PLEKHG4   20000 perm   4 sec   (4758 perm/sec)   p_kst 9.920500e-01   p_cons 8.915000e-02   p_joint 2.523000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHG4.6_3660_20000_0.99205_0.08915_0.2523.png
                gene_name: PLEKHG4
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 24 percent done.
PLEKHG4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.678782e-01	ci left: 4.734532e-02	ci right 5.611815e-02	k: 516	n:10000
Cons ci ratio: 3.595002e-02	ci left: 5.332753e-01	ci right 5.528996e-01	k: 5431	n:10000
KS ci ratio: 2.589536e-01	ci left: 1.949575e-02	ci right 2.538701e-02	k: 223	n:10000
PLEKHG4B   10000 perm   2 sec   (4961 perm/sec)   p_kst 2.230000e-02   p_cons 5.431000e-01   p_joint 5.160000e-02

Joint ci ratio: 1.121161e-01	ci left: 5.436186e-02	ci right 6.086750e-02	k: 1151	n:20000
Cons ci ratio: 2.510371e-02	ci left: 5.424226e-01	ci right 5.562631e-01	k: 10987	n:20000
KS ci ratio: 1.841662e-01	ci left: 2.010730e-02	ci right 2.423325e-02	k: 442	n:20000
PLEKHG4B   20000 perm   4 sec   (4473 perm/sec)   p_kst 2.210000e-02   p_cons 5.493500e-01   p_joint 5.755000e-02

Joint ci ratio: 8.960573e-02	ci left: 5.727341e-02	ci right 6.267886e-02	k: 1798	n:30000
Cons ci ratio: 1.997506e-02	ci left: 5.564634e-01	ci right 5.677245e-01	k: 16863	n:30000
KS ci ratio: 1.507789e-01	ci left: 2.036990e-02	ci right 2.372355e-02	k: 660	n:30000
PLEKHG4B   30000 perm   7 sec   (4293 perm/sec)   p_kst 2.200000e-02   p_cons 5.621000e-01   p_joint 5.993333e-02

Joint ci ratio: 9.401685e-02	ci left: 3.968851e-02	ci right 4.362838e-02	k: 1665	n:40000
Cons ci ratio: 1.680795e-02	ci left: 5.713645e-01	ci right 5.810745e-01	k: 23049	n:40000
KS ci ratio: 1.303773e-01	ci left: 2.065741e-02	ci right 2.356254e-02	k: 883	n:40000
PLEKHG4B   40000 perm   10 sec   (4176 perm/sec)   p_kst 2.207500e-02   p_cons 5.762250e-01   p_joint 4.162500e-02

Joint ci ratio: 8.640092e-02	ci left: 3.782906e-02	ci right 4.126466e-02	k: 1976	n:50000
Cons ci ratio: 1.499990e-02	ci left: 5.729757e-01	ci right 5.816553e-01	k: 28866	n:50000
KS ci ratio: 1.114135e-01	ci left: 2.281236e-02	ci right 2.552327e-02	k: 1207	n:50000
PLEKHG4B   50000 perm   12 sec   (4076 perm/sec)   p_kst 2.414000e-02   p_cons 5.773200e-01   p_joint 3.952000e-02

Joint ci ratio: 7.949254e-02	ci left: 3.739955e-02	ci right 4.051191e-02	k: 2336	n:60000
Cons ci ratio: 1.368751e-02	ci left: 5.735523e-01	ci right 5.814736e-01	k: 34651	n:60000
KS ci ratio: 1.019082e-01	ci left: 2.283886e-02	ci right 2.530747e-02	k: 1443	n:60000
PLEKHG4B   60000 perm   15 sec   (3991 perm/sec)   p_kst 2.405000e-02   p_cons 5.775167e-01   p_joint 3.893333e-02

Joint ci ratio: 7.324023e-02	ci left: 3.787256e-02	ci right 4.076579e-02	k: 2751	n:70000
Cons ci ratio: 1.266967e-02	ci left: 5.739449e-01	ci right 5.812772e-01	k: 40433	n:70000
KS ci ratio: 9.485965e-02	ci left: 2.268346e-02	ci right 2.495624e-02	k: 1666	n:70000
PLEKHG4B   70000 perm   18 sec   (3917 perm/sec)   p_kst 2.380000e-02   p_cons 5.776143e-01   p_joint 3.930000e-02

Outputting figure to mutsig2_images.part000000000133/PLEKHG4B.6_3888_70000_0.0238_0.57761_0.0393.png
                gene_name: PLEKHG4B
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.041 

Current progress: 25 percent done.
PLK1S1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.558138e-02	ci left: 8.567172e-01	ci right 8.702703e-01	k: 8636	n:10000
Cons ci ratio: 2.663008e-02	ci left: 6.749868e-01	ci right 6.933059e-01	k: 6842	n:10000
KS ci ratio: 2.809562e-02	ci left: 6.512237e-01	ci right 6.698827e-01	k: 6606	n:10000
PLK1S1   10000 perm   2 sec   (5180 perm/sec)   p_kst 6.606000e-01   p_cons 6.842000e-01   p_joint 8.636000e-01

Outputting figure to mutsig2_images.part000000000133/PLK1S1.6_2073_10000_0.6606_0.6842_0.8636.png
                gene_name: PLK1S1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 27 percent done.
PMFBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.268642e-02	ci left: 1.758581e-01	ci right 1.911268e-01	k: 1834	n:10000
Cons ci ratio: 8.780620e-03	ci left: 9.479391e-01	ci right 9.563950e-01	k: 9523	n:10000
KS ci ratio: 1.510425e-01	ci left: 5.831582e-02	ci right 6.794061e-02	k: 630	n:10000
PMFBP1   10000 perm   2 sec   (5131 perm/sec)   p_kst 6.300000e-02   p_cons 9.523000e-01   p_joint 1.834000e-01

Joint ci ratio: 5.752079e-02	ci left: 1.830013e-01	ci right 1.938895e-01	k: 3768	n:20000
Cons ci ratio: 6.195973e-03	ci left: 9.494092e-01	ci right 9.553584e-01	k: 19049	n:20000
KS ci ratio: 1.061339e-01	ci left: 6.045150e-02	ci right 6.727598e-02	k: 1276	n:20000
PMFBP1   20000 perm   4 sec   (4647 perm/sec)   p_kst 6.380000e-02   p_cons 9.524500e-01   p_joint 1.884000e-01

Joint ci ratio: 5.893896e-02	ci left: 1.246997e-01	ci right 1.323057e-01	k: 3854	n:30000
Cons ci ratio: 5.074067e-03	ci left: 9.496909e-01	ci right 9.545544e-01	k: 28565	n:30000
KS ci ratio: 8.701088e-02	ci left: 6.060294e-02	ci right 6.614865e-02	k: 1900	n:30000
PMFBP1   30000 perm   7 sec   (4494 perm/sec)   p_kst 6.333333e-02   p_cons 9.521667e-01   p_joint 1.284667e-01

Outputting figure to mutsig2_images.part000000000133/PMFBP1.6_3164_30000_0.063333_0.95217_0.12847.png
                gene_name: PMFBP1
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 29 percent done.
PMS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.403275e-02	ci left: 7.179511e-01	ci right 7.355166e-01	k: 7268	n:10000
Cons ci ratio: 5.182757e-02	ci left: 3.543616e-01	ci right 3.733178e-01	k: 3638	n:10000
KS ci ratio: 3.014793e-02	ci left: 6.187420e-01	ci right 6.377832e-01	k: 6283	n:10000
PMS2   10000 perm   2 sec   (5025 perm/sec)   p_kst 6.283000e-01   p_cons 3.638000e-01   p_joint 7.268000e-01

Outputting figure to mutsig2_images.part000000000133/PMS2.6_2649_10000_0.6283_0.3638_0.7268.png
                gene_name: PMS2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 31 percent done.
PLEKHA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.537425e-02	ci left: 6.956504e-01	ci right 7.136303e-01	k: 7047	n:10000
Cons ci ratio: 3.547462e-02	ci left: 5.398854e-01	ci right 5.594856e-01	k: 5497	n:10000
KS ci ratio: 3.296523e-02	ci left: 5.759714e-01	ci right 5.953787e-01	k: 5857	n:10000
PLEKHA7   10000 perm   2 sec   (5038 perm/sec)   p_kst 5.857000e-01   p_cons 5.497000e-01   p_joint 7.047000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHA7.5_3458_10000_0.5857_0.5497_0.7047.png
                gene_name: PLEKHA7
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 32 percent done.
PLEKHO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.015541e-02	ci left: 1.852067e-01	ci right 2.007725e-01	k: 1929	n:10000
Cons ci ratio: 1.425481e-01	ci left: 6.526833e-02	ci right 7.538371e-02	k: 702	n:10000
KS ci ratio: 3.064035e-02	ci left: 6.111060e-01	ci right 6.302237e-01	k: 6207	n:10000
PLEKHO2   10000 perm   2 sec   (5759 perm/sec)   p_kst 6.207000e-01   p_cons 7.020000e-02   p_joint 1.929000e-01

Joint ci ratio: 4.773592e-02	ci left: 2.460935e-01	ci right 2.581786e-01	k: 5042	n:20000
Cons ci ratio: 1.036835e-01	ci left: 6.323153e-02	ci right 7.019508e-02	k: 1333	n:20000
KS ci ratio: 2.053607e-02	ci left: 6.389250e-01	ci right 6.522326e-01	k: 12912	n:20000
PLEKHO2   20000 perm   4 sec   (5189 perm/sec)   p_kst 6.456000e-01   p_cons 6.665000e-02   p_joint 2.521000e-01

Joint ci ratio: 4.341673e-02	ci left: 2.090065e-01	ci right 2.183157e-01	k: 6409	n:30000
Cons ci ratio: 8.281044e-02	ci left: 6.661478e-02	ci right 7.240226e-02	k: 2084	n:30000
KS ci ratio: 1.672759e-02	ci left: 6.412604e-01	ci right 6.521112e-01	k: 19401	n:30000
PLEKHO2   30000 perm   6 sec   (4948 perm/sec)   p_kst 6.467000e-01   p_cons 6.946667e-02   p_joint 2.136333e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHO2.5_1497_30000_0.6467_0.069467_0.21363.png
                gene_name: PLEKHO2
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 34 percent done.
PLIN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.604552e-02	ci left: 3.191965e-01	ci right 3.377036e-01	k: 3284	n:10000
Cons ci ratio: 1.249691e-02	ci left: 9.019602e-01	ci right 9.134010e-01	k: 9078	n:10000
KS ci ratio: 1.378589e-01	ci left: 6.962154e-02	ci right 8.002777e-02	k: 747	n:10000
PLIN4   10000 perm   2 sec   (5178 perm/sec)   p_kst 7.470000e-02   p_cons 9.078000e-01   p_joint 3.284000e-01

Joint ci ratio: 6.530511e-02	ci left: 1.476420e-01	ci right 1.576592e-01	k: 3052	n:20000
Cons ci ratio: 9.330431e-03	ci left: 8.939771e-01	ci right 9.024067e-01	k: 17965	n:20000
KS ci ratio: 9.664763e-02	ci left: 7.231533e-02	ci right 7.970850e-02	k: 1519	n:20000
PLIN4   20000 perm   4 sec   (4686 perm/sec)   p_kst 7.595000e-02   p_cons 8.982500e-01   p_joint 1.526000e-01

Outputting figure to mutsig2_images.part000000000133/PLIN4.5_4098_20000_0.07595_0.89825_0.1526.png
                gene_name: PLIN4
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 36 percent done.
PLOD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.746542e-02	ci left: 6.613903e-01	ci right 6.799102e-01	k: 6707	n:10000
KS ci ratio: 1.339460e-02	ci left: 8.893387e-01	ci right 9.014299e-01	k: 8955	n:10000
PLOD2   10000 perm   2 sec   (5552 perm/sec)   p_kst 8.955000e-01   p_cons 6.707000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PLOD2.5_2357_10000_0.8955_0.6707_1.png
                gene_name: PLOD2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
PLRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.458799e-02	ci left: 8.718340e-01	ci right 8.847448e-01	k: 8784	n:10000
Cons ci ratio: 3.594278e-02	ci left: 5.333754e-01	ci right 5.529994e-01	k: 5432	n:10000
KS ci ratio: 5.013191e-03	ci left: 9.813449e-01	ci right 9.863675e-01	k: 9840	n:10000
PLRG1   10000 perm   2 sec   (6107 perm/sec)   p_kst 9.840000e-01   p_cons 5.432000e-01   p_joint 8.784000e-01

Outputting figure to mutsig2_images.part000000000133/PLRG1.5_1605_10000_0.984_0.5432_0.8784.png
                gene_name: PLRG1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 39 percent done.
PLSCR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.746511e-02	ci left: 3.957559e-01	ci right 4.150992e-01	k: 4054	n:10000
Cons ci ratio: 4.152048e-03	ci left: 9.867570e-01	ci right 9.909509e-01	k: 9890	n:10000
KS ci ratio: 8.096203e-02	ci left: 1.821553e-01	ci right 1.976258e-01	k: 1898	n:10000
PLSCR2   10000 perm   2 sec   (6197 perm/sec)   p_kst 1.898000e-01   p_cons 9.890000e-01   p_joint 4.054000e-01

Outputting figure to mutsig2_images.part000000000133/PLSCR2.5_699_10000_0.1898_0.989_0.4054.png
                gene_name: PLSCR2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 41 percent done.
PLSCR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.587477e-02	ci left: 2.528084e-01	ci right 2.701307e-01	k: 2614	n:10000
Cons ci ratio: 1.121871e-01	ci left: 1.026640e-01	ci right 1.149650e-01	k: 1087	n:10000
KS ci ratio: 3.506102e-02	ci left: 5.456958e-01	ci right 5.652719e-01	k: 5555	n:10000
PLSCR4   10000 perm   2 sec   (6403 perm/sec)   p_kst 5.555000e-01   p_cons 1.087000e-01   p_joint 2.614000e-01

Joint ci ratio: 4.837726e-02	ci left: 2.411343e-01	ci right 2.531393e-01	k: 4942	n:20000
Cons ci ratio: 7.941166e-02	ci left: 1.042709e-01	ci right 1.129432e-01	k: 2171	n:20000
KS ci ratio: 2.549141e-02	ci left: 5.348140e-01	ci right 5.486738e-01	k: 10835	n:20000
PLSCR4   20000 perm   3 sec   (5723 perm/sec)   p_kst 5.417500e-01   p_cons 1.085500e-01   p_joint 2.471000e-01

Outputting figure to mutsig2_images.part000000000133/PLSCR4.5_1022_20000_0.54175_0.10855_0.2471.png
                gene_name: PLSCR4
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 42 percent done.
PLXDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.370683e-01	ci left: 7.039603e-02	ci right 8.085279e-02	k: 755	n:10000
Cons ci ratio: 7.827576e-02	ci left: 1.925924e-01	ci right 2.083825e-01	k: 2004	n:10000
KS ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
PLXDC1   10000 perm   2 sec   (6084 perm/sec)   p_kst 4.320000e-02   p_cons 2.004000e-01   p_joint 7.550000e-02

Joint ci ratio: 1.136954e-01	ci left: 5.290189e-02	ci right 5.932793e-02	k: 1121	n:20000
Cons ci ratio: 5.711964e-02	ci left: 1.851273e-01	ci right 1.960628e-01	k: 3811	n:20000
KS ci ratio: 1.292004e-01	ci left: 4.115060e-02	ci right 4.688292e-02	k: 879	n:20000
PLXDC1   20000 perm   4 sec   (5467 perm/sec)   p_kst 4.395000e-02   p_cons 1.905500e-01   p_joint 5.605000e-02

Joint ci ratio: 8.981837e-02	ci left: 5.701237e-02	ci right 6.240662e-02	k: 1790	n:30000
Cons ci ratio: 4.534893e-02	ci left: 1.948583e-01	ci right 2.039333e-01	k: 5981	n:30000
KS ci ratio: 1.053673e-01	ci left: 4.177175e-02	ci right 4.645039e-02	k: 1322	n:30000
PLXDC1   30000 perm   6 sec   (5230 perm/sec)   p_kst 4.406667e-02   p_cons 1.993667e-01   p_joint 5.966667e-02

Joint ci ratio: 7.295052e-02	ci left: 6.486372e-02	ci right 6.979932e-02	k: 2692	n:40000
Cons ci ratio: 3.932268e-02	ci left: 1.950721e-01	ci right 2.029217e-01	k: 7959	n:40000
KS ci ratio: 9.168694e-02	ci left: 4.169289e-02	ci right 4.572369e-02	k: 1747	n:40000
PLXDC1   40000 perm   8 sec   (5068 perm/sec)   p_kst 4.367500e-02   p_cons 1.989750e-01   p_joint 6.730000e-02

Outputting figure to mutsig2_images.part000000000133/PLXDC1.5_1559_40000_0.043675_0.19898_0.0673.png
                gene_name: PLXDC1
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.065 
    ci_joint_bounds_right: 0.070 

Current progress: 44 percent done.
PLXDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.441962e-02	ci left: 5.548147e-01	ci right 5.743477e-01	k: 5646	n:10000
KS ci ratio: 4.225205e-02	ci left: 4.526899e-01	ci right 4.723320e-01	k: 4625	n:10000
PLXDC2   10000 perm   2 sec   (5739 perm/sec)   p_kst 4.625000e-01   p_cons 5.646000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PLXDC2.5_1646_10000_0.4625_0.5646_1.png
                gene_name: PLXDC2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
PLXNB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.504075e-01	ci left: 5.879809e-02	ci right 6.845803e-02	k: 635	n:10000
Cons ci ratio: 1.667539e-02	ci left: 8.395897e-01	ci right 8.538077e-01	k: 8468	n:10000
KS ci ratio: 2.217497e-01	ci left: 2.693317e-02	ci right 3.374407e-02	k: 302	n:10000
PLXNB1   10000 perm   2 sec   (4305 perm/sec)   p_kst 3.020000e-02   p_cons 8.468000e-01   p_joint 6.350000e-02

Joint ci ratio: 9.744782e-02	ci left: 7.119113e-02	ci right 7.853305e-02	k: 1496	n:20000
Cons ci ratio: 1.178605e-02	ci left: 8.418342e-01	ci right 8.518647e-01	k: 16938	n:20000
KS ci ratio: 1.606734e-01	ci left: 2.657390e-02	ci right 3.126439e-02	k: 577	n:20000
PLXNB1   20000 perm   5 sec   (3887 perm/sec)   p_kst 2.885000e-02   p_cons 8.469000e-01   p_joint 7.480000e-02

Joint ci ratio: 7.669614e-02	ci left: 7.701969e-02	ci right 8.319525e-02	k: 2402	n:30000
Cons ci ratio: 9.568601e-03	ci left: 8.442577e-01	ci right 8.524081e-01	k: 25451	n:30000
KS ci ratio: 1.312683e-01	ci left: 2.696883e-02	ci right 3.078980e-02	k: 865	n:30000
PLXNB1   30000 perm   8 sec   (3754 perm/sec)   p_kst 2.883333e-02   p_cons 8.483667e-01   p_joint 8.006667e-02

Joint ci ratio: 7.668143e-02	ci left: 5.896863e-02	ci right 6.369530e-02	k: 2452	n:40000
Cons ci ratio: 8.320891e-03	ci left: 8.437373e-01	ci right 8.508122e-01	k: 33892	n:40000
KS ci ratio: 1.105968e-01	ci left: 2.876350e-02	ci right 3.215512e-02	k: 1217	n:40000
PLXNB1   40000 perm   11 sec   (3659 perm/sec)   p_kst 3.042500e-02   p_cons 8.473000e-01   p_joint 6.130000e-02

Joint ci ratio: 6.247062e-02	ci left: 7.071497e-02	ci right 7.529475e-02	k: 3649	n:50000
Cons ci ratio: 7.460209e-03	ci left: 8.434918e-01	ci right 8.498279e-01	k: 42334	n:50000
KS ci ratio: 9.907210e-02	ci left: 2.885389e-02	ci right 3.188096e-02	k: 1517	n:50000
PLXNB1   50000 perm   14 sec   (3591 perm/sec)   p_kst 3.034000e-02   p_cons 8.466800e-01   p_joint 7.298000e-02

Outputting figure to mutsig2_images.part000000000133/PLXNB1.5_6552_50000_0.03034_0.84668_0.07298.png
                gene_name: PLXNB1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.075 

Current progress: 47 percent done.
PM20D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.223354e-02	ci left: 7.480651e-01	ci right 7.649852e-01	k: 7566	n:10000
Cons ci ratio: 4.980742e-02	ci left: 3.728605e-01	ci right 3.920080e-01	k: 3824	n:10000
KS ci ratio: 2.760228e-02	ci left: 6.591754e-01	ci right 6.777264e-01	k: 6685	n:10000
PM20D1   10000 perm   2 sec   (5831 perm/sec)   p_kst 6.685000e-01   p_cons 3.824000e-01   p_joint 7.566000e-01

Outputting figure to mutsig2_images.part000000000133/PM20D1.5_1561_10000_0.6685_0.3824_0.7566.png
                gene_name: PM20D1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 49 percent done.
PLEKHA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.229388e-02	ci left: 7.470537e-01	ci right 7.639972e-01	k: 7556	n:10000
KS ci ratio: 2.298170e-02	ci left: 7.355281e-01	ci right 7.527294e-01	k: 7442	n:10000
PLEKHA4   10000 perm   2 sec   (5754 perm/sec)   p_kst 7.442000e-01   p_cons 7.556000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PLEKHA4.4_2416_10000_0.7442_0.7556_1.png
                gene_name: PLEKHA4
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
PLEKHA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.441439e-03	ci left: 9.615247e-01	ci right 9.688010e-01	k: 9653	n:10000
Cons ci ratio: 1.447174e-02	ci left: 8.735722e-01	ci right 8.864055e-01	k: 8801	n:10000
KS ci ratio: 2.103697e-02	ci left: 7.681038e-01	ci right 7.845349e-01	k: 7764	n:10000
PLEKHA5   10000 perm   2 sec   (5095 perm/sec)   p_kst 7.764000e-01   p_cons 8.801000e-01   p_joint 9.653000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHA5.4_3769_10000_0.7764_0.8801_0.9653.png
                gene_name: PLEKHA5
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 53 percent done.
PLEKHO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.818083e-02	ci left: 1.576751e-01	ci right 1.723206e-01	k: 1649	n:10000
Cons ci ratio: 1.832994e-02	ci left: 8.129369e-01	ci right 8.280759e-01	k: 8206	n:10000
KS ci ratio: 1.225593e-01	ci left: 8.708509e-02	ci right 9.855338e-02	k: 927	n:10000
PLEKHO1   10000 perm   2 sec   (6043 perm/sec)   p_kst 9.270000e-02   p_cons 8.206000e-01   p_joint 1.649000e-01

Joint ci ratio: 6.507885e-02	ci left: 1.485299e-01	ci right 1.585711e-01	k: 3070	n:20000
Cons ci ratio: 1.289252e-02	ci left: 8.167788e-01	ci right 8.274274e-01	k: 16443	n:20000
KS ci ratio: 8.763043e-02	ci left: 8.695066e-02	ci right 9.496872e-02	k: 1818	n:20000
PLEKHO1   20000 perm   4 sec   (5427 perm/sec)   p_kst 9.090000e-02   p_cons 8.221500e-01   p_joint 1.535000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHO1.4_1254_20000_0.0909_0.82215_0.1535.png
                gene_name: PLEKHO1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 54 percent done.
PLOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.599742e-02	ci left: 6.853663e-01	ci right 7.035203e-01	k: 6945	n:10000
Cons ci ratio: 7.580070e-02	ci left: 2.029395e-01	ci right 2.190293e-01	k: 2109	n:10000
KS ci ratio: 2.564270e-02	ci left: 6.912135e-01	ci right 7.092697e-01	k: 7003	n:10000
PLOD1   10000 perm   2 sec   (5493 perm/sec)   p_kst 7.003000e-01   p_cons 2.109000e-01   p_joint 6.945000e-01

Outputting figure to mutsig2_images.part000000000133/PLOD1.4_2260_10000_0.7003_0.2109_0.6945.png
                gene_name: PLOD1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 56 percent done.
PLOD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.789393e-02	ci left: 1.585590e-01	ci right 1.732362e-01	k: 1658	n:10000
Cons ci ratio: 1.302694e-02	ci left: 8.945686e-01	ci right 9.063969e-01	k: 9006	n:10000
KS ci ratio: 1.448894e-01	ci left: 6.323884e-02	ci right 7.321448e-02	k: 681	n:10000
PLOD3   10000 perm   2 sec   (5552 perm/sec)   p_kst 6.810000e-02   p_cons 9.006000e-01   p_joint 1.658000e-01

Joint ci ratio: 6.260429e-02	ci left: 1.587444e-01	ci right 1.690536e-01	k: 3277	n:20000
Cons ci ratio: 9.258838e-03	ci left: 8.954026e-01	ci right 9.037809e-01	k: 17993	n:20000
KS ci ratio: 1.010309e-01	ci left: 6.645278e-02	ci right 7.357284e-02	k: 1399	n:20000
PLOD3   20000 perm   4 sec   (5037 perm/sec)   p_kst 6.995000e-02   p_cons 8.996500e-01   p_joint 1.638500e-01

Joint ci ratio: 5.240968e-02	ci left: 1.530319e-01	ci right 1.613013e-01	k: 4714	n:30000
Cons ci ratio: 7.890729e-03	ci left: 8.880612e-01	ci right 8.951294e-01	k: 26749	n:30000
KS ci ratio: 8.198932e-02	ci left: 6.788989e-02	ci right 7.372689e-02	k: 2123	n:30000
PLOD3   30000 perm   6 sec   (4833 perm/sec)   p_kst 7.076667e-02   p_cons 8.916333e-01   p_joint 1.571333e-01

Outputting figure to mutsig2_images.part000000000133/PLOD3.4_2293_30000_0.070767_0.89163_0.15713.png
                gene_name: PLOD3
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 58 percent done.
PML
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.500901e-02	ci left: 7.017023e-01	ci right 7.195748e-01	k: 7107	n:10000
KS ci ratio: 1.852255e-02	ci left: 8.097874e-01	ci right 8.250272e-01	k: 8175	n:10000
PML   10000 perm   2 sec   (5362 perm/sec)   p_kst 8.175000e-01   p_cons 7.107000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PML.4_3702_10000_0.8175_0.7107_1.png
                gene_name: PML
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
PLEKHA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.139518e-02	ci left: 2.806233e-01	ci right 2.984994e-01	k: 2895	n:10000
Cons ci ratio: 6.831423e-02	ci left: 2.391649e-01	ci right 2.561823e-01	k: 2476	n:10000
KS ci ratio: 4.667687e-02	ci left: 4.038243e-01	ci right 4.232261e-01	k: 4135	n:10000
PLEKHA3   10000 perm   2 sec   (6368 perm/sec)   p_kst 4.135000e-01   p_cons 2.476000e-01   p_joint 2.895000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHA3.3_935_10000_0.4135_0.2476_0.2895.png
                gene_name: PLEKHA3
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 61 percent done.
PLEKHA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.933755e-02	ci left: 2.337305e-01	ci right 2.506200e-01	k: 2421	n:10000
Cons ci ratio: 4.868830e-03	ci left: 9.823135e-01	ci right 9.871982e-01	k: 9849	n:10000
KS ci ratio: 1.321220e-01	ci left: 7.553121e-02	ci right 8.631442e-02	k: 808	n:10000
PLEKHA8   10000 perm   2 sec   (6373 perm/sec)   p_kst 8.080000e-02   p_cons 9.849000e-01   p_joint 2.421000e-01

Joint ci ratio: 4.013408e-02	ci left: 3.164208e-01	ci right 3.294307e-01	k: 6458	n:20000
Cons ci ratio: 3.242163e-03	ci left: 9.848559e-01	ci right 9.881004e-01	k: 19731	n:20000
KS ci ratio: 9.480375e-02	ci left: 7.500461e-02	ci right 8.251839e-02	k: 1574	n:20000
PLEKHA8   20000 perm   4 sec   (5673 perm/sec)   p_kst 7.870000e-02   p_cons 9.865500e-01   p_joint 3.229000e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHA8.3_1375_20000_0.0787_0.98655_0.3229.png
                gene_name: PLEKHA8
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 63 percent done.
PLIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.475817e-02	ci left: 1.686795e-01	ci right 1.837096e-01	k: 1761	n:10000
Cons ci ratio: 6.665108e-02	ci left: 2.483582e-01	ci right 2.655836e-01	k: 2569	n:10000
KS ci ratio: 7.688723e-02	ci left: 1.983069e-01	ci right 2.142646e-01	k: 2062	n:10000
PLIN1   10000 perm   2 sec   (6169 perm/sec)   p_kst 2.062000e-01   p_cons 2.569000e-01   p_joint 1.761000e-01

Outputting figure to mutsig2_images.part000000000133/PLIN1.3_1601_10000_0.2062_0.2569_0.1761.png
                gene_name: PLIN1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 64 percent done.
PLS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.093384e-02	ci left: 6.065858e-01	ci right 6.257465e-01	k: 6162	n:10000
Cons ci ratio: 4.368164e-02	ci left: 4.362244e-01	ci right 4.558070e-01	k: 4460	n:10000
KS ci ratio: 3.985010e-02	ci left: 4.818551e-01	ci right 5.015497e-01	k: 4917	n:10000
PLS3   10000 perm   2 sec   (5816 perm/sec)   p_kst 4.917000e-01   p_cons 4.460000e-01   p_joint 6.162000e-01

Outputting figure to mutsig2_images.part000000000133/PLS3.3_1953_10000_0.4917_0.446_0.6162.png
                gene_name: PLS3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 66 percent done.
PLSCR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.467681e-02	ci left: 3.301173e-01	ci right 3.487763e-01	k: 3394	n:10000
Cons ci ratio: 2.726672e-02	ci left: 6.646124e-01	ci right 6.830863e-01	k: 6739	n:10000
KS ci ratio: 8.808495e-02	ci left: 1.579697e-01	ci right 1.726258e-01	k: 1652	n:10000
PLSCR3   10000 perm   2 sec   (6623 perm/sec)   p_kst 1.652000e-01   p_cons 6.739000e-01   p_joint 3.394000e-01

Outputting figure to mutsig2_images.part000000000133/PLSCR3.3_916_10000_0.1652_0.6739_0.3394.png
                gene_name: PLSCR3
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 68 percent done.
PLUNC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.239631e-01	ci left: 8.523830e-02	ci right 9.660131e-02	k: 908	n:10000
Cons ci ratio: 5.555378e-02	ci left: 3.230678e-01	ci right 3.416300e-01	k: 3323	n:10000
KS ci ratio: 2.209987e-01	ci left: 2.712237e-02	ci right 3.395474e-02	k: 304	n:10000
PLUNC   10000 perm   2 sec   (6479 perm/sec)   p_kst 3.040000e-02   p_cons 3.323000e-01   p_joint 9.080000e-02

Joint ci ratio: 7.200805e-02	ci left: 1.243836e-01	ci right 1.337245e-01	k: 2580	n:20000
Cons ci ratio: 3.744848e-02	ci left: 3.472695e-01	ci right 3.605730e-01	k: 7078	n:20000
KS ci ratio: 1.533170e-01	ci left: 2.921889e-02	ci right 3.411851e-02	k: 632	n:20000
PLUNC   20000 perm   3 sec   (5767 perm/sec)   p_kst 3.160000e-02   p_cons 3.539000e-01   p_joint 1.290000e-01

Joint ci ratio: 6.844182e-02	ci left: 9.518314e-02	ci right 1.019615e-01	k: 2956	n:30000
Cons ci ratio: 3.168531e-02	ci left: 3.324473e-01	ci right 3.431841e-01	k: 10134	n:30000
KS ci ratio: 1.249461e-01	ci left: 2.977857e-02	ci right 3.377945e-02	k: 952	n:30000
PLUNC   30000 perm   6 sec   (5348 perm/sec)   p_kst 3.173333e-02   p_cons 3.378000e-01   p_joint 9.853333e-02

Joint ci ratio: 6.375444e-02	ci left: 8.359038e-02	ci right 8.911984e-02	k: 3453	n:40000
Cons ci ratio: 2.752072e-02	ci left: 3.318690e-01	ci right 3.411548e-01	k: 13460	n:40000
KS ci ratio: 1.089471e-01	ci left: 2.963952e-02	ci right 3.307896e-02	k: 1253	n:40000
PLUNC   40000 perm   8 sec   (5184 perm/sec)   p_kst 3.132500e-02   p_cons 3.365000e-01   p_joint 8.632500e-02

Joint ci ratio: 6.019670e-02	ci left: 7.582175e-02	ci right 8.054736e-02	k: 3908	n:50000
Cons ci ratio: 2.461776e-02	ci left: 3.323180e-01	ci right 3.406210e-01	k: 16823	n:50000
KS ci ratio: 9.742943e-02	ci left: 2.983005e-02	ci right 3.290468e-02	k: 1567	n:50000
PLUNC   50000 perm   10 sec   (5061 perm/sec)   p_kst 3.134000e-02   p_cons 3.364600e-01   p_joint 7.816000e-02

Outputting figure to mutsig2_images.part000000000133/PLUNC.3_799_50000_0.03134_0.33646_0.07816.png
                gene_name: PLUNC
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.081 

Current progress: 69 percent done.
PLXNB3
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.154516e-02	ci left: 4.610765e-01	ci right 4.807405e-01	k: 4709	n:10000
KS ci ratio: 1.227189e-02	ci left: 9.050431e-01	ci right 9.163163e-01	k: 9108	n:10000
PLXNB3   10000 perm   2 sec   (4822 perm/sec)   p_kst 9.108000e-01   p_cons 4.709000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PLXNB3.2_5988_10000_0.9108_0.4709_1.png
                gene_name: PLXNB3
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
PMM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.022202e-02	ci left: 9.314385e-01	ci right 9.411054e-01	k: 9364	n:10000
KS ci ratio: 4.316395e-02	ci left: 4.421108e-01	ci right 4.617172e-01	k: 4519	n:10000
PMM1   10000 perm   2 sec   (6421 perm/sec)   p_kst 4.519000e-01   p_cons 9.364000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PMM1.3_821_10000_0.4519_0.9364_1.png
                gene_name: PMM1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
PMS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.893634e-02	ci left: 4.934506e-01	ci right 5.131474e-01	k: 5033	n:10000
Cons ci ratio: 4.913932e-02	ci left: 3.792292e-01	ci right 3.984357e-01	k: 3888	n:10000
KS ci ratio: 4.871812e-02	ci left: 3.833100e-01	ci right 4.025524e-01	k: 3929	n:10000
PMS1   10000 perm   2 sec   (5399 perm/sec)   p_kst 3.929000e-01   p_cons 3.888000e-01   p_joint 5.033000e-01

Outputting figure to mutsig2_images.part000000000133/PMS1.3_2847_10000_0.3929_0.3888_0.5033.png
                gene_name: PMS1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 75 percent done.
PLEKHG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.896504e-02	ci left: 6.373404e-01	ci right 6.561741e-01	k: 6468	n:10000
KS ci ratio: 1.176713e-02	ci left: 9.118323e-01	ci right 9.227232e-01	k: 9174	n:10000
PLEKHG2   10000 perm   2 sec   (5262 perm/sec)   p_kst 9.174000e-01   p_cons 6.468000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PLEKHG2.2_4233_10000_0.9174_0.6468_1.png
                gene_name: PLEKHG2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
PLEKHG6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.914919e-02	ci left: 2.347184e-01	ci right 2.516315e-01	k: 2431	n:10000
Cons ci ratio: 1.104297e-01	ci left: 1.056875e-01	ci right 1.181396e-01	k: 1118	n:10000
KS ci ratio: 3.169744e-02	ci left: 5.949377e-01	ci right 6.142014e-01	k: 6046	n:10000
PLEKHG6   10000 perm   2 sec   (5945 perm/sec)   p_kst 6.046000e-01   p_cons 1.118000e-01   p_joint 2.431000e-01

Joint ci ratio: 6.221878e-02	ci left: 1.604228e-01	ci right 1.707746e-01	k: 3311	n:20000
Cons ci ratio: 7.872215e-02	ci left: 1.059412e-01	ci right 1.146724e-01	k: 2205	n:20000
KS ci ratio: 2.232337e-02	ci left: 5.997396e-01	ci right 6.133295e-01	k: 12131	n:20000
PLEKHG6   20000 perm   4 sec   (5296 perm/sec)   p_kst 6.065500e-01   p_cons 1.102500e-01   p_joint 1.655500e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHG6.2_2479_20000_0.60655_0.11025_0.16555.png
                gene_name: PLEKHG6
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 78 percent done.
PLEKHG7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.858267e-01	ci left: 3.863000e-02	ci right 4.663920e-02	k: 425	n:10000
Cons ci ratio: 5.908968e-02	ci left: 2.964797e-01	ci right 3.146337e-01	k: 3055	n:10000
KS ci ratio: 1.344875e-01	ci left: 7.301117e-02	ci right 8.363602e-02	k: 782	n:10000
PLEKHG7   10000 perm   1 sec   (6800 perm/sec)   p_kst 7.820000e-02   p_cons 3.055000e-01   p_joint 4.250000e-02

Joint ci ratio: 8.832658e-02	ci left: 8.567661e-02	ci right 9.364316e-02	k: 1792	n:20000
Cons ci ratio: 4.209500e-02	ci left: 2.960387e-01	ci right 3.088188e-01	k: 6048	n:20000
KS ci ratio: 9.549654e-02	ci left: 7.397763e-02	ci right 8.144569e-02	k: 1553	n:20000
PLEKHG7   20000 perm   3 sec   (6012 perm/sec)   p_kst 7.765000e-02   p_cons 3.024000e-01   p_joint 8.960000e-02

Outputting figure to mutsig2_images.part000000000133/PLEKHG7.2_1184_20000_0.07765_0.3024_0.0896.png
                gene_name: PLEKHG7
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.094 

Current progress: 80 percent done.
PLEKHH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.866476e-02	ci left: 4.969503e-01	ci right 5.166457e-01	k: 5068	n:10000
Cons ci ratio: 3.755631e-03	ci left: 9.889489e-01	ci right 9.927569e-01	k: 9910	n:10000
KS ci ratio: 1.003429e-01	ci left: 1.257171e-01	ci right 1.390978e-01	k: 1323	n:10000
PLEKHH1   10000 perm   2 sec   (5220 perm/sec)   p_kst 1.323000e-01   p_cons 9.910000e-01   p_joint 5.068000e-01

Joint ci ratio: 2.656267e-02	ci left: 5.142991e-01	ci right 5.281947e-01	k: 10425	n:20000
Cons ci ratio: 2.721460e-03	ci left: 9.890569e-01	ci right 9.917977e-01	k: 19810	n:20000
KS ci ratio: 7.114030e-02	ci left: 1.270914e-01	ci right 1.365159e-01	k: 2635	n:20000
PLEKHH1   20000 perm   4 sec   (4700 perm/sec)   p_kst 1.317500e-01   p_cons 9.905000e-01   p_joint 5.212500e-01

Outputting figure to mutsig2_images.part000000000133/PLEKHH1.2_4207_20000_0.13175_0.9905_0.52125.png
                gene_name: PLEKHH1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 81 percent done.
PLIN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.116412e-02	ci left: 7.659773e-01	ci right 7.824627e-01	k: 7743	n:10000
Cons ci ratio: 2.927630e-02	ci left: 6.324129e-01	ci right 6.513044e-01	k: 6419	n:10000
KS ci ratio: 5.846905e-02	ci left: 3.009417e-01	ci right 3.191691e-01	k: 3100	n:10000
PLIN2   10000 perm   2 sec   (6609 perm/sec)   p_kst 3.100000e-01   p_cons 6.419000e-01   p_joint 7.743000e-01

Outputting figure to mutsig2_images.part000000000133/PLIN2.2_1342_10000_0.31_0.6419_0.7743.png
                gene_name: PLIN2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 83 percent done.
PLK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.964965e-02	ci left: 3.743530e-01	ci right 3.935147e-01	k: 3839	n:10000
Cons ci ratio: 5.228968e-02	ci left: 3.502859e-01	ci right 3.691959e-01	k: 3597	n:10000
KS ci ratio: 2.284450e-01	ci left: 2.532660e-02	ci right 3.195180e-02	k: 285	n:10000
PLK3   10000 perm   2 sec   (6313 perm/sec)   p_kst 2.850000e-02   p_cons 3.597000e-01   p_joint 3.839000e-01

Joint ci ratio: 4.692704e-02	ci left: 2.525420e-01	ci right 2.647282e-01	k: 5172	n:20000
Cons ci ratio: 3.511852e-02	ci left: 3.770525e-01	ci right 3.905813e-01	k: 7676	n:20000
KS ci ratio: 1.615388e-01	ci left: 2.628568e-02	ci right 3.095271e-02	k: 571	n:20000
PLK3   20000 perm   4 sec   (5665 perm/sec)   p_kst 2.855000e-02   p_cons 3.838000e-01   p_joint 2.586000e-01

Joint ci ratio: 1.273323e-02	ci left: 7.546892e-01	ci right 7.643938e-01	k: 22787	n:30000
Cons ci ratio: 2.864078e-02	ci left: 3.788569e-01	ci right 3.898989e-01	k: 11531	n:30000
KS ci ratio: 1.330183e-01	ci left: 2.625910e-02	ci right 3.003302e-02	k: 843	n:30000
PLK3   30000 perm   6 sec   (5365 perm/sec)   p_kst 2.810000e-02   p_cons 3.843667e-01   p_joint 7.595667e-01

Joint ci ratio: 1.761666e-02	ci left: 5.482366e-01	ci right 5.580057e-01	k: 22125	n:40000
Cons ci ratio: 2.476697e-02	ci left: 3.803023e-01	ci right 3.898644e-01	k: 15403	n:40000
KS ci ratio: 1.160673e-01	ci left: 2.611359e-02	ci right 2.935546e-02	k: 1108	n:40000
PLK3   40000 perm   8 sec   (5152 perm/sec)   p_kst 2.770000e-02   p_cons 3.850750e-01   p_joint 5.531250e-01

Joint ci ratio: 1.696508e-02	ci left: 5.119889e-01	ci right 5.207692e-01	k: 25819	n:50000
Cons ci ratio: 2.218783e-02	ci left: 3.800531e-01	ci right 3.886003e-01	k: 19216	n:50000
KS ci ratio: 1.048790e-01	ci left: 2.575272e-02	ci right 2.862253e-02	k: 1358	n:50000
PLK3   50000 perm   10 sec   (5010 perm/sec)   p_kst 2.716000e-02   p_cons 3.843200e-01   p_joint 5.163800e-01

Joint ci ratio: 1.739989e-02	ci left: 4.542570e-01	ci right 4.622471e-01	k: 27495	n:60000
Cons ci ratio: 2.032140e-02	ci left: 3.788748e-01	ci right 3.866698e-01	k: 22966	n:60000
KS ci ratio: 9.501887e-02	ci left: 2.627115e-02	ci right 2.890814e-02	k: 1654	n:60000
PLK3   60000 perm   12 sec   (4891 perm/sec)   p_kst 2.756667e-02   p_cons 3.827667e-01   p_joint 4.582500e-01

Outputting figure to mutsig2_images.part000000000133/PLK3.2_2001_60000_0.027567_0.38277_0.45825.png
                gene_name: PLK3
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 85 percent done.
PLP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.772473e-02	ci left: 5.092530e-01	ci right 5.289359e-01	k: 5191	n:10000
Cons ci ratio: 2.052749e-02	ci left: 7.766130e-01	ci right 7.928209e-01	k: 7848	n:10000
KS ci ratio: 2.138699e-01	ci left: 2.901644e-02	ci right 3.605933e-02	k: 324	n:10000
PLP1   10000 perm   1 sec   (6856 perm/sec)   p_kst 3.240000e-02   p_cons 7.848000e-01   p_joint 5.191000e-01

Joint ci ratio: 6.216256e-02	ci left: 1.606697e-01	ci right 1.710277e-01	k: 3316	n:20000
Cons ci ratio: 1.468027e-02	ci left: 7.751522e-01	ci right 7.866660e-01	k: 15619	n:20000
KS ci ratio: 1.528191e-01	ci left: 2.941145e-02	ci right 3.432589e-02	k: 636	n:20000
PLP1   20000 perm   3 sec   (6009 perm/sec)   p_kst 3.180000e-02   p_cons 7.809500e-01   p_joint 1.658000e-01

Joint ci ratio: 8.443197e-02	ci left: 6.419615e-02	ci right 6.988805e-02	k: 2010	n:30000
Cons ci ratio: 1.186543e-02	ci left: 7.797024e-01	ci right 7.890425e-01	k: 23532	n:30000
KS ci ratio: 1.269551e-01	ci left: 2.884147e-02	ci right 3.278342e-02	k: 923	n:30000
PLP1   30000 perm   5 sec   (5685 perm/sec)   p_kst 3.076667e-02   p_cons 7.844000e-01   p_joint 6.700000e-02

Joint ci ratio: 8.175545e-02	ci left: 5.212371e-02	ci right 5.659126e-02	k: 2173	n:40000
Cons ci ratio: 1.026740e-02	ci left: 7.806137e-01	ci right 7.886949e-01	k: 31387	n:40000
KS ci ratio: 1.092623e-01	ci left: 2.946915e-02	ci right 3.289936e-02	k: 1246	n:40000
PLP1   40000 perm   7 sec   (5469 perm/sec)   p_kst 3.115000e-02   p_cons 7.846750e-01   p_joint 5.432500e-02

Joint ci ratio: 6.592618e-02	ci left: 6.385869e-02	ci right 6.823186e-02	k: 3301	n:50000
Cons ci ratio: 9.145241e-03	ci left: 7.824591e-01	ci right 7.896677e-01	k: 39304	n:50000
KS ci ratio: 9.739737e-02	ci left: 2.984958e-02	ci right 3.292515e-02	k: 1568	n:50000
PLP1   50000 perm   9 sec   (5307 perm/sec)   p_kst 3.136000e-02   p_cons 7.860800e-01   p_joint 6.602000e-02

Outputting figure to mutsig2_images.part000000000133/PLP1.2_862_50000_0.03136_0.78608_0.06602.png
                gene_name: PLP1
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.068 

Current progress: 86 percent done.
PLS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
KS ci ratio: 1.975368e-02	ci left: 7.894875e-01	ci right 8.053389e-01	k: 7975	n:10000
PLS1   10000 perm   2 sec   (6250 perm/sec)   p_kst 7.975000e-01   p_cons 1.890000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000133/PLS1.2_1950_10000_0.7975_0.189_1.png
                gene_name: PLS1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
PLSCR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.362839e-02	ci left: 5.662431e-01	ci right 5.857126e-01	k: 5760	n:10000
Cons ci ratio: 7.573248e-02	ci left: 2.032352e-01	ci right 2.193333e-01	k: 2112	n:10000
KS ci ratio: 5.454299e-02	ci left: 3.312097e-01	ci right 3.498832e-01	k: 3405	n:10000
PLSCR1   10000 perm   2 sec   (6559 perm/sec)   p_kst 3.405000e-01   p_cons 2.112000e-01   p_joint 5.760000e-01

Outputting figure to mutsig2_images.part000000000133/PLSCR1.2_989_10000_0.3405_0.2112_0.576.png
                gene_name: PLSCR1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 90 percent done.
PLXNA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.456684e-02	ci left: 5.527100e-01	ci right 5.722536e-01	k: 5625	n:10000
Cons ci ratio: 2.208266e-02	ci left: 7.505939e-01	ci right 7.674550e-01	k: 7591	n:10000
KS ci ratio: 1.230716e-01	ci left: 8.640461e-02	ci right 9.783428e-02	k: 920	n:10000
PLXNA1   10000 perm   2 sec   (4856 perm/sec)   p_kst 9.200000e-02   p_cons 7.591000e-01   p_joint 5.625000e-01

Joint ci ratio: 1.865685e-02	ci left: 6.817281e-01	ci right 6.946172e-01	k: 13764	n:20000
Cons ci ratio: 1.553802e-02	ci left: 7.549260e-01	ci right 7.667981e-01	k: 15218	n:20000
KS ci ratio: 8.656147e-02	ci left: 8.896023e-02	ci right 9.705854e-02	k: 1859	n:20000
PLXNA1   20000 perm   5 sec   (4350 perm/sec)   p_kst 9.295000e-02   p_cons 7.609000e-01   p_joint 6.882000e-01

Outputting figure to mutsig2_images.part000000000133/PLXNA1.2_5815_20000_0.09295_0.7609_0.6882.png
                gene_name: PLXNA1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 92 percent done.
PLXNA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
Cons ci ratio: 1.977202e-02	ci left: 7.891832e-01	ci right 8.050433e-01	k: 7972	n:10000
KS ci ratio: 8.059551e-02	ci left: 1.835333e-01	ci right 1.990470e-01	k: 1912	n:10000
PLXNA3   10000 perm   2 sec   (4861 perm/sec)   p_kst 1.912000e-01   p_cons 7.972000e-01   p_joint 4.564000e-01

Outputting figure to mutsig2_images.part000000000133/PLXNA3.2_5744_10000_0.1912_0.7972_0.4564.png
                gene_name: PLXNA3
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 93 percent done.
PLXNB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.798676e-02	ci left: 8.185266e-01	ci right 8.334830e-01	k: 8261	n:10000
Cons ci ratio: 3.506812e-02	ci left: 5.455956e-01	ci right 5.651722e-01	k: 5554	n:10000
KS ci ratio: 2.913003e-02	ci left: 6.347256e-01	ci right 6.535903e-01	k: 6442	n:10000
PLXNB2   10000 perm   2 sec   (4897 perm/sec)   p_kst 6.442000e-01   p_cons 5.554000e-01   p_joint 8.261000e-01

Outputting figure to mutsig2_images.part000000000133/PLXNB2.2_5657_10000_0.6442_0.5554_0.8261.png
                gene_name: PLXNB2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 95 percent done.
PM20D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.342080e-02	ci left: 3.405470e-01	ci right 3.593405e-01	k: 3499	n:10000
Cons ci ratio: 7.607495e-02	ci left: 2.017565e-01	ci right 2.178129e-01	k: 2097	n:10000
KS ci ratio: 3.535299e-02	ci left: 5.415883e-01	ci right 5.611817e-01	k: 5514	n:10000
PM20D2   10000 perm   2 sec   (6435 perm/sec)   p_kst 5.514000e-01   p_cons 2.097000e-01   p_joint 3.499000e-01

Outputting figure to mutsig2_images.part000000000133/PM20D2.2_1339_10000_0.5514_0.2097_0.3499.png
                gene_name: PM20D2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 97 percent done.
PMF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.639973e-02	ci left: 1.632741e-01	ci right 1.781182e-01	k: 1706	n:10000
Cons ci ratio: 9.663204e-02	ci left: 1.344301e-01	ci right 1.481796e-01	k: 1412	n:10000
KS ci ratio: 5.575464e-02	ci left: 3.214794e-01	ci right 3.400192e-01	k: 3307	n:10000
PMF1   10000 perm   1 sec   (7130 perm/sec)   p_kst 3.307000e-01   p_cons 1.412000e-01   p_joint 1.706000e-01

Outputting figure to mutsig2_images.part000000000133/PMF1.2_638_10000_0.3307_0.1412_0.1706.png
                gene_name: PMF1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 98 percent done.
PMP22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.203560e-01	ci left: 9.009981e-02	ci right 1.017368e-01	k: 958	n:10000
Cons ci ratio: 7.931618e-02	ci left: 1.884559e-01	ci right 2.041214e-01	k: 1962	n:10000
KS ci ratio: 1.606345e-01	ci left: 5.166964e-02	ci right 6.079103e-02	k: 561	n:10000
PMP22   10000 perm   1 sec   (7010 perm/sec)   p_kst 5.610000e-02   p_cons 1.962000e-01   p_joint 9.580000e-02

Joint ci ratio: 3.596863e-02	ci left: 3.658433e-01	ci right 3.792938e-01	k: 7451	n:20000
Cons ci ratio: 5.738014e-02	ci left: 1.837429e-01	ci right 1.946476e-01	k: 3783	n:20000
KS ci ratio: 1.153381e-01	ci left: 5.144255e-02	ci right 5.778772e-02	k: 1091	n:20000
PMP22   20000 perm   3 sec   (6169 perm/sec)   p_kst 5.455000e-02   p_cons 1.891500e-01   p_joint 3.725500e-01

Joint ci ratio: 2.909998e-02	ci left: 3.713785e-01	ci right 3.823787e-01	k: 11306	n:30000
Cons ci ratio: 4.690186e-02	ci left: 1.844182e-01	ci right 1.933088e-01	k: 5665	n:30000
KS ci ratio: 9.460228e-02	ci left: 5.156679e-02	ci right 5.671998e-02	k: 1623	n:30000
PMP22   30000 perm   5 sec   (5853 perm/sec)   p_kst 5.410000e-02   p_cons 1.888333e-01   p_joint 3.768667e-01

Outputting figure to mutsig2_images.part000000000133/PMP22.2_499_30000_0.0541_0.18883_0.37687.png
                gene_name: PMP22
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000133
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 133 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1426>
Subject: Job 9894084: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1426>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000134> was used as the working directory.
Started at Sat Oct  6 00:24:56 2012
Results reported at Sat Oct  6 00:35:02 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000134.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000134.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 134  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000134.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    662.91 sec.
    Max Memory :      3685 MB
    Max Swap   :      5947 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
134
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 134
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 134: processing genes 11991 - 12080
Calculating significance of each gene.
Using projection method.
11991	PNKP	9.399023e-01
11992	PNLDC1	8.751002e-02
11993	PNLIP	7.466052e-03
11994	PNLIPRP1	4.627247e-01
11995	PNLIPRP2	6.048337e-01
11996	PNLIPRP3	2.885479e-01
11997	PNMA1	1
11998	PNMA2	2.782738e-01
11999	PNMA3	6.564576e-01
12000/18030 12000	PNMA5	2.105529e-01
12001	PNMAL1	3.843940e-02
12002	PNMAL2	9.723361e-01
12003	PNMT	1
12004	PNN	6.120242e-01
12005	PNO1	5.773634e-01
12006	PNOC	1
12007	PNP	5.793941e-01
12008	PNPLA1	3.055274e-01
12009	PNPLA2	1
12010	PNPLA3	3.106110e-01
12011	PNPLA4	1.207286e-01
12012	PNPLA5	1.082830e-01
12013	PNPLA6	9.871292e-01
12014	PNPLA7	3.104883e-01
12015	PNPLA8	5.781906e-01
12016	PNPO	4.035464e-01
12017	PNPT1	3.811606e-02
12018	PNRC1	4.469939e-01
12019	PNRC2	1
12020	POC1A	8.782382e-01
12021	POC1B	3.131041e-01
12022	POC5	7.320497e-01
12023	PODN	9.818757e-01
12024	PODNL1	2.307447e-01
12025	PODXL	4.798265e-01
12026	PODXL2	6.800082e-01
12027	POF1B	6.597032e-01
12028	POFUT1	8.973651e-01
12029	POFUT2	8.889867e-01
12030	POGK	2.831716e-02
12031	POGZ	2.324803e-01
12032	POLA1	3.917204e-01
12033	POLA2	6.355624e-01
12034	POLB	2.952033e-01
12035	POLD1	8.555760e-01
12036	POLD2	8.213264e-01
12037	POLD3	4.726690e-01
12038	POLD4	1
12039	POLDIP2	8.853483e-01
12040	POLDIP3	5.332249e-02
12041	POLE	4.352566e-01
12042	POLE2	6.601965e-01
12043	POLE3	5.468371e-01
12044	POLE4	1
12045	POLG	7.618008e-01
12046	POLG2	8.338154e-01
12047	POLH	2.490897e-01
12048	POLI	3.922284e-03
12049	POLK	6.868865e-01
12050	POLL	7.979098e-01
12051	POLM	7.550758e-01
12052	POLN	5.066727e-01
12053	POLQ	7.328190e-01
12054	POLR1A	5.336551e-01
12055	POLR1B	4.010452e-01
12056	POLR1C	7.674327e-01
12057	POLR1D	1.551492e-01
12058	POLR1E	4.936039e-01
12059	POLR2A	9.260619e-01
12060	POLR2B	5.731606e-01
12061	POLR2C	1
12062	POLR2D	3.369965e-01
12063	POLR2E	7.349568e-01
12064	POLR2F	1
12065	POLR2G	1
12066	POLR2H	2.920732e-01
12067	POLR2I	6.011823e-01
12068	POLR2J	1
12069	POLR2J2	1
12070	POLR2J3	3.375902e-01
12071	POLR2K	8.333503e-02
12072	POLR2L	1
12073	POLR3A	3.127945e-01
12074	POLR3B	9.542457e-02
12075	POLR3C	5.803094e-01
12076	POLR3D	1.746758e-01
12077	POLR3E	2.011332e-01
12078	POLR3F	1
12079	POLR3G	1
12080	POLR3GL	5.090166e-01
Done

Running MutSig 2:
Scatter job 134: processing genes 11991 - 12080
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
POLE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.432174e-02	ci left: 5.562179e-01	ci right 5.757437e-01	k: 5660	n:10000
Cons ci ratio: 4.109773e-02	ci left: 4.664693e-01	ci right 4.861445e-01	k: 4763	n:10000
KS ci ratio: 4.882037e-02	ci left: 3.823146e-01	ci right 4.015484e-01	k: 3919	n:10000
POLE   10000 perm   4 sec   (2725 perm/sec)   p_kst 3.919000e-01   p_cons 4.763000e-01   p_joint 5.660000e-01

Outputting figure to mutsig2_images.part000000000134/POLE.21_7057_10000_0.3919_0.4763_0.566.png
                gene_name: POLE
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 2 percent done.
POLQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.664240e-02	ci left: 6.747853e-01	ci right 6.931075e-01	k: 6840	n:10000
Cons ci ratio: 3.952468e-02	ci left: 4.859529e-01	ci right 5.056495e-01	k: 4958	n:10000
KS ci ratio: 4.238824e-02	ci left: 4.510928e-01	ci right 4.707300e-01	k: 4609	n:10000
POLQ   10000 perm   4 sec   (2550 perm/sec)   p_kst 4.609000e-01   p_cons 4.958000e-01   p_joint 6.840000e-01

Outputting figure to mutsig2_images.part000000000134/POLQ.12_7893_10000_0.4609_0.4958_0.684.png
                gene_name: POLQ
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 4 percent done.
POLR3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.299240e-02	ci left: 5.755702e-01	ci right 5.949801e-01	k: 5853	n:10000
Cons ci ratio: 6.318812e-02	ci left: 2.690368e-01	ci right 2.866928e-01	k: 2778	n:10000
KS ci ratio: 2.047888e-02	ci left: 7.774236e-01	ci right 7.936097e-01	k: 7856	n:10000
POLR3A   10000 perm   2 sec   (4035 perm/sec)   p_kst 7.856000e-01   p_cons 2.778000e-01   p_joint 5.853000e-01

Outputting figure to mutsig2_images.part000000000134/POLR3A.11_4297_10000_0.7856_0.2778_0.5853.png
                gene_name: POLR3A
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 6 percent done.
POLR3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.682941e-02	ci left: 1.618987e-01	ci right 1.766945e-01	k: 1692	n:10000
Cons ci ratio: 1.035678e-01	ci left: 1.187734e-01	ci right 1.318457e-01	k: 1252	n:10000
KS ci ratio: 6.709020e-02	ci left: 2.458864e-01	ci right 2.630569e-01	k: 2544	n:10000
POLR3B   10000 perm   2 sec   (4063 perm/sec)   p_kst 2.544000e-01   p_cons 1.252000e-01   p_joint 1.692000e-01

Joint ci ratio: 6.181659e-02	ci left: 1.622002e-01	ci right 1.725967e-01	k: 3347	n:20000
Cons ci ratio: 7.664826e-02	ci left: 1.111998e-01	ci right 1.201123e-01	k: 2312	n:20000
KS ci ratio: 4.709280e-02	ci left: 2.512026e-01	ci right 2.633680e-01	k: 5145	n:20000
POLR3B   20000 perm   5 sec   (3749 perm/sec)   p_kst 2.572500e-01   p_cons 1.156000e-01   p_joint 1.673500e-01

Outputting figure to mutsig2_images.part000000000134/POLR3B.11_3514_20000_0.25725_0.1156_0.16735.png
                gene_name: POLR3B
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 8 percent done.
PNPT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.320754e-02	ci left: 4.416119e-01	ci right 4.612164e-01	k: 4514	n:10000
Cons ci ratio: 1.587755e-02	ci left: 8.521264e-01	ci right 8.658638e-01	k: 8591	n:10000
KS ci ratio: 5.430104e-02	ci left: 3.331960e-01	ci right 3.518958e-01	k: 3425	n:10000
PNPT1   10000 perm   2 sec   (4347 perm/sec)   p_kst 3.425000e-01   p_cons 8.591000e-01   p_joint 4.514000e-01

Outputting figure to mutsig2_images.part000000000134/PNPT1.10_2464_10000_0.3425_0.8591_0.4514.png
                gene_name: PNPT1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 9 percent done.
POLI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.262343e-03	ci left: 9.632049e-01	ci right 9.703198e-01	k: 9669	n:10000
Cons ci ratio: 1.919576e-02	ci left: 7.987200e-01	ci right 8.143010e-01	k: 8066	n:10000
KS ci ratio: 3.311486e-02	ci left: 5.737646e-01	ci right 5.931867e-01	k: 5835	n:10000
POLI   10000 perm   2 sec   (4239 perm/sec)   p_kst 5.835000e-01   p_cons 8.066000e-01   p_joint 9.669000e-01

Outputting figure to mutsig2_images.part000000000134/POLI.10_2263_10000_0.5835_0.8066_0.9669.png
                gene_name: POLI
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 11 percent done.
POLR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.777696e-03	ci left: 9.367201e-01	ci right 9.460207e-01	k: 9415	n:10000
Cons ci ratio: 3.213000e-02	ci left: 5.884132e-01	ci right 6.077296e-01	k: 5981	n:10000
KS ci ratio: 7.463565e-03	ci left: 9.613148e-01	ci right 9.686110e-01	k: 9651	n:10000
POLR1A   10000 perm   2 sec   (4092 perm/sec)   p_kst 9.651000e-01   p_cons 5.981000e-01   p_joint 9.415000e-01

Outputting figure to mutsig2_images.part000000000134/POLR1A.10_5299_10000_0.9651_0.5981_0.9415.png
                gene_name: POLR1A
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 13 percent done.
PNLDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.877649e-02	ci left: 8.056233e-01	ci right 8.209937e-01	k: 8134	n:10000
Cons ci ratio: 5.318683e-02	ci left: 3.425342e-01	ci right 3.613521e-01	k: 3519	n:10000
KS ci ratio: 3.413353e-02	ci left: 5.589243e-01	ci right 5.784357e-01	k: 5687	n:10000
PNLDC1   10000 perm   2 sec   (4800 perm/sec)   p_kst 5.687000e-01   p_cons 3.519000e-01   p_joint 8.134000e-01

Outputting figure to mutsig2_images.part000000000134/PNLDC1.9_1635_10000_0.5687_0.3519_0.8134.png
                gene_name: PNLDC1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 15 percent done.
POGZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.268989e-02	ci left: 8.992899e-01	ci right 9.108729e-01	k: 9052	n:10000
Cons ci ratio: 3.447565e-02	ci left: 5.540129e-01	ci right 5.735499e-01	k: 5638	n:10000
KS ci ratio: 2.807683e-02	ci left: 6.515256e-01	ci right 6.701806e-01	k: 6609	n:10000
POGZ   10000 perm   3 sec   (3457 perm/sec)   p_kst 6.609000e-01   p_cons 5.638000e-01   p_joint 9.052000e-01

Outputting figure to mutsig2_images.part000000000134/POGZ.9_4319_10000_0.6609_0.5638_0.9052.png
                gene_name: POGZ
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 17 percent done.
POGK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.947729e-02	ci left: 4.865527e-01	ci right 5.062494e-01	k: 4964	n:10000
Cons ci ratio: 4.863654e-02	ci left: 3.841063e-01	ci right 4.033556e-01	k: 3937	n:10000
KS ci ratio: 3.149235e-02	ci left: 5.980500e-01	ci right 6.172873e-01	k: 6077	n:10000
POGK   10000 perm   3 sec   (3970 perm/sec)   p_kst 6.077000e-01   p_cons 3.937000e-01   p_joint 4.964000e-01

Outputting figure to mutsig2_images.part000000000134/POGK.8_1846_10000_0.6077_0.3937_0.4964.png
                gene_name: POGK
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 19 percent done.
POLA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.828764e-02	ci left: 5.018507e-01	ci right 5.215425e-01	k: 5117	n:10000
Cons ci ratio: 1.556154e-02	ci left: 8.570234e-01	ci right 8.705639e-01	k: 8639	n:10000
KS ci ratio: 6.414628e-02	ci left: 2.630978e-01	ci right 2.806353e-01	k: 2718	n:10000
POLA1   10000 perm   3 sec   (3646 perm/sec)   p_kst 2.718000e-01   p_cons 8.639000e-01   p_joint 5.117000e-01

Outputting figure to mutsig2_images.part000000000134/POLA1.8_4537_10000_0.2718_0.8639_0.5117.png
                gene_name: POLA1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 21 percent done.
POLR1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.279515e-01	ci left: 8.028489e-02	ci right 9.135778e-02	k: 857	n:10000
Cons ci ratio: 3.950098e-02	ci left: 4.862528e-01	ci right 5.059495e-01	k: 4961	n:10000
KS ci ratio: 2.092556e-01	ci left: 3.034440e-02	ci right 3.753044e-02	k: 338	n:10000
POLR1B   10000 perm   2 sec   (4461 perm/sec)   p_kst 3.380000e-02   p_cons 4.961000e-01   p_joint 8.570000e-02

Joint ci ratio: 9.261904e-02	ci left: 7.838034e-02	ci right 8.604164e-02	k: 1643	n:20000
Cons ci ratio: 2.736128e-02	ci left: 4.994955e-01	ci right 5.134026e-01	k: 10129	n:20000
KS ci ratio: 1.444767e-01	ci left: 3.292999e-02	ci right 3.810619e-02	k: 709	n:20000
POLR1B   20000 perm   5 sec   (3927 perm/sec)   p_kst 3.545000e-02   p_cons 5.064500e-01   p_joint 8.215000e-02

Joint ci ratio: 9.617773e-02	ci left: 4.993781e-02	ci right 5.501597e-02	k: 1573	n:30000
Cons ci ratio: 2.285234e-02	ci left: 4.894597e-01	ci right 5.008079e-01	k: 14854	n:30000
KS ci ratio: 1.190124e-01	ci left: 3.281934e-02	ci right 3.700469e-02	k: 1046	n:30000
POLR1B   30000 perm   8 sec   (3813 perm/sec)   p_kst 3.486667e-02   p_cons 4.951333e-01   p_joint 5.243333e-02

Joint ci ratio: 7.638331e-02	ci left: 5.941055e-02	ci right 6.415331e-02	k: 2470	n:40000
Cons ci ratio: 1.948592e-02	ci left: 4.979876e-01	ci right 5.078120e-01	k: 20116	n:40000
KS ci ratio: 1.018276e-01	ci left: 3.390300e-02	ci right 3.756480e-02	k: 1428	n:40000
POLR1B   40000 perm   11 sec   (3729 perm/sec)   p_kst 3.570000e-02   p_cons 5.029000e-01   p_joint 6.175000e-02

Joint ci ratio: 6.701936e-02	ci left: 6.188973e-02	ci right 6.620105e-02	k: 3201	n:50000
Cons ci ratio: 1.748543e-02	ci left: 4.968874e-01	ci right 5.056724e-01	k: 25064	n:50000
KS ci ratio: 9.079460e-02	ci left: 3.430586e-02	ci right 3.758830e-02	k: 1796	n:50000
POLR1B   50000 perm   14 sec   (3656 perm/sec)   p_kst 3.592000e-02   p_cons 5.012800e-01   p_joint 6.402000e-02

Outputting figure to mutsig2_images.part000000000134/POLR1B.8_3468_50000_0.03592_0.50128_0.06402.png
                gene_name: POLR1B
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.066 

Current progress: 23 percent done.
POLR2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.994172e-01	ci left: 3.348089e-02	ci right 4.099178e-02	k: 371	n:10000
Cons ci ratio: 2.726052e-02	ci left: 6.647131e-01	ci right 6.831855e-01	k: 6740	n:10000
KS ci ratio: 2.998689e-01	ci left: 1.427992e-02	ci right 1.940710e-02	k: 167	n:10000
POLR2B   10000 perm   3 sec   (3853 perm/sec)   p_kst 1.670000e-02   p_cons 6.740000e-01   p_joint 3.710000e-02

Joint ci ratio: 1.794582e-01	ci left: 2.120602e-02	ci right 2.543413e-02	k: 465	n:20000
Cons ci ratio: 1.909283e-02	ci left: 6.716750e-01	ci right 6.846732e-01	k: 13564	n:20000
KS ci ratio: 2.139961e-01	ci left: 1.473272e-02	ci right 1.830984e-02	k: 329	n:20000
POLR2B   20000 perm   6 sec   (3597 perm/sec)   p_kst 1.645000e-02   p_cons 6.782000e-01   p_joint 2.325000e-02

Joint ci ratio: 1.330183e-01	ci left: 2.625910e-02	ci right 3.003302e-02	k: 843	n:30000
Cons ci ratio: 1.551447e-02	ci left: 6.749888e-01	ci right 6.855763e-01	k: 20409	n:30000
KS ci ratio: 1.749082e-01	ci left: 1.502500e-02	ci right 1.793639e-02	k: 493	n:30000
POLR2B   30000 perm   9 sec   (3519 perm/sec)   p_kst 1.643333e-02   p_cons 6.803000e-01   p_joint 2.810000e-02

Joint ci ratio: 1.275295e-01	ci left: 2.160162e-02	ci right 2.456818e-02	k: 922	n:40000
Cons ci ratio: 1.342828e-02	ci left: 6.759552e-01	ci right 6.851186e-01	k: 27222	n:40000
KS ci ratio: 1.527379e-01	ci left: 1.496149e-02	ci right 1.745946e-02	k: 647	n:40000
POLR2B   40000 perm   12 sec   (3413 perm/sec)   p_kst 1.617500e-02   p_cons 6.805500e-01   p_joint 2.305000e-02

Joint ci ratio: 9.638724e-02	ci left: 3.047454e-02	ci right 3.358011e-02	k: 1600	n:50000
Cons ci ratio: 1.125119e-02	ci left: 7.042536e-01	ci right 7.122422e-01	k: 35413	n:50000
KS ci ratio: 1.363568e-01	ci left: 1.515025e-02	ci right 1.738642e-02	k: 812	n:50000
POLR2B   50000 perm   15 sec   (3344 perm/sec)   p_kst 1.624000e-02   p_cons 7.082600e-01   p_joint 3.200000e-02

Joint ci ratio: 9.939761e-02	ci left: 2.400936e-02	ci right 2.653684e-02	k: 1515	n:60000
Cons ci ratio: 1.028109e-02	ci left: 7.041930e-01	ci right 7.114869e-01	k: 42471	n:60000
KS ci ratio: 1.247104e-01	ci left: 1.518882e-02	ci right 1.722503e-02	k: 971	n:60000
POLR2B   60000 perm   18 sec   (3277 perm/sec)   p_kst 1.618333e-02   p_cons 7.078500e-01   p_joint 2.525000e-02

Joint ci ratio: 9.209566e-02	ci left: 2.406547e-02	ci right 2.640268e-02	k: 1765	n:70000
Cons ci ratio: 9.532425e-03	ci left: 7.038563e-01	ci right 7.106122e-01	k: 49507	n:70000
KS ci ratio: 1.154079e-01	ci left: 1.527774e-02	ci right 1.716267e-02	k: 1134	n:70000
POLR2B   70000 perm   22 sec   (3214 perm/sec)   p_kst 1.620000e-02   p_cons 7.072429e-01   p_joint 2.521429e-02

Joint ci ratio: 8.720135e-02	ci left: 2.356208e-02	ci right 2.572258e-02	k: 1970	n:80000
Cons ci ratio: 8.910432e-03	ci left: 7.043716e-01	ci right 7.106884e-01	k: 56603	n:80000
KS ci ratio: 1.090334e-01	ci left: 1.503237e-02	ci right 1.677799e-02	k: 1271	n:80000
POLR2B   80000 perm   25 sec   (3183 perm/sec)   p_kst 1.588750e-02   p_cons 7.075375e-01   p_joint 2.462500e-02

Joint ci ratio: 8.011592e-02	ci left: 2.487203e-02	ci right 2.695868e-02	k: 2331	n:90000
Cons ci ratio: 8.384464e-03	ci left: 7.053627e-01	ci right 7.113128e-01	k: 63751	n:90000
KS ci ratio: 1.026884e-01	ci left: 1.511450e-02	ci right 1.676135e-02	k: 1433	n:90000
POLR2B   90000 perm   29 sec   (3145 perm/sec)   p_kst 1.592222e-02   p_cons 7.083444e-01   p_joint 2.590000e-02

Joint ci ratio: 7.799129e-02	ci left: 2.367816e-02	ci right 2.560955e-02	k: 2463	n:100000
Cons ci ratio: 7.951019e-03	ci left: 7.056823e-01	ci right 7.113256e-01	k: 70851	n:100000
KS ci ratio: 9.690507e-02	ci left: 1.531922e-02	ci right 1.688903e-02	k: 1609	n:100000
POLR2B   100000 perm   32 sec   (3109 perm/sec)   p_kst 1.609000e-02   p_cons 7.085100e-01   p_joint 2.463000e-02

Outputting figure to mutsig2_images.part000000000134/POLR2B.8_3625_100000_0.01609_0.70851_0.02463.png
                gene_name: POLR2B
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.024 
    ci_joint_bounds_right: 0.026 

Current progress: 25 percent done.
PNLIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.319896e-02	ci left: 7.318901e-01	ci right 7.491696e-01	k: 7406	n:10000
Cons ci ratio: 4.630365e-02	ci left: 4.077101e-01	ci right 4.271381e-01	k: 4174	n:10000
KS ci ratio: 1.080128e-02	ci left: 9.243065e-01	ci right 9.344416e-01	k: 9295	n:10000
PNLIP   10000 perm   2 sec   (5185 perm/sec)   p_kst 9.295000e-01   p_cons 4.174000e-01   p_joint 7.406000e-01

Outputting figure to mutsig2_images.part000000000134/PNLIP.7_1446_10000_0.9295_0.4174_0.7406.png
                gene_name: PNLIP
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 26 percent done.
PNPLA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.407096e-02	ci left: 5.598265e-01	ci right 5.793330e-01	k: 5696	n:10000
Cons ci ratio: 4.459463e-02	ci left: 4.260512e-01	ci right 4.455862e-01	k: 4358	n:10000
KS ci ratio: 4.626559e-02	ci left: 4.081086e-01	ci right 4.275393e-01	k: 4178	n:10000
PNPLA7   10000 perm   2 sec   (4486 perm/sec)   p_kst 4.178000e-01   p_cons 4.358000e-01   p_joint 5.696000e-01

Outputting figure to mutsig2_images.part000000000134/PNPLA7.7_4169_10000_0.4178_0.4358_0.5696.png
                gene_name: PNPLA7
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 28 percent done.
POLDIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.118018e-02	ci left: 4.654705e-01	ci right 4.851439e-01	k: 4753	n:10000
Cons ci ratio: 2.758983e-02	ci left: 6.593767e-01	ci right 6.779249e-01	k: 6687	n:10000
KS ci ratio: 6.312521e-02	ci left: 2.694328e-01	ci right 2.870966e-01	k: 2782	n:10000
POLDIP3   10000 perm   2 sec   (4952 perm/sec)   p_kst 2.782000e-01   p_cons 6.687000e-01   p_joint 4.753000e-01

Outputting figure to mutsig2_images.part000000000134/POLDIP3.6_1302_10000_0.2782_0.6687_0.4753.png
                gene_name: POLDIP3
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 30 percent done.
POLR2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.606713e-02	ci left: 8.491691e-01	ci right 8.630228e-01	k: 8562	n:10000
KS ci ratio: 2.169017e-02	ci left: 7.571705e-01	ci right 7.738746e-01	k: 7656	n:10000
POLR2A   10000 perm   3 sec   (3517 perm/sec)   p_kst 7.656000e-01   p_cons 8.562000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000134/POLR2A.6_6029_10000_0.7656_0.8562_1.png
                gene_name: POLR2A
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
POLR3E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.760919e-02	ci left: 1.594429e-01	ci right 1.741517e-01	k: 1667	n:10000
Cons ci ratio: 2.492999e-02	ci left: 7.030138e-01	ci right 7.208626e-01	k: 7120	n:10000
KS ci ratio: 1.376601e-01	ci left: 6.981515e-02	ci right 8.023404e-02	k: 749	n:10000
POLR3E   10000 perm   2 sec   (4864 perm/sec)   p_kst 7.490000e-02   p_cons 7.120000e-01   p_joint 1.667000e-01

Joint ci ratio: 5.226796e-02	ci left: 2.137302e-01	ci right 2.252515e-01	k: 4389	n:20000
Cons ci ratio: 1.813478e-02	ci left: 6.938467e-01	ci right 7.065950e-01	k: 14005	n:20000
KS ci ratio: 9.895639e-02	ci left: 6.913890e-02	ci right 7.638590e-02	k: 1454	n:20000
POLR3E   20000 perm   5 sec   (4409 perm/sec)   p_kst 7.270000e-02   p_cons 7.002500e-01   p_joint 2.194500e-01

Outputting figure to mutsig2_images.part000000000134/POLR3E.6_2207_20000_0.0727_0.70025_0.21945.png
                gene_name: POLR3E
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 34 percent done.
PNMAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
Cons ci ratio: 5.014647e-02	ci left: 3.696768e-01	ci right 3.887936e-01	k: 3792	n:10000
KS ci ratio: 6.375972e-02	ci left: 2.654732e-01	ci right 2.830585e-01	k: 2742	n:10000
PNMAL1   10000 perm   2 sec   (5485 perm/sec)   p_kst 2.742000e-01   p_cons 3.792000e-01   p_joint 3.297000e-01

Outputting figure to mutsig2_images.part000000000134/PNMAL1.5_1350_10000_0.2742_0.3792_0.3297.png
                gene_name: PNMAL1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 36 percent done.
PNN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.846048e-02	ci left: 8.108033e-01	ci right 8.260108e-01	k: 8185	n:10000
Cons ci ratio: 4.008195e-02	ci left: 4.789571e-01	ci right 4.986494e-01	k: 4888	n:10000
KS ci ratio: 1.230204e-02	ci left: 9.046320e-01	ci right 9.159277e-01	k: 9104	n:10000
PNN   10000 perm   2 sec   (4215 perm/sec)   p_kst 9.104000e-01   p_cons 4.888000e-01   p_joint 8.185000e-01

Outputting figure to mutsig2_images.part000000000134/PNN.5_2190_10000_0.9104_0.4888_0.8185.png
                gene_name: PNN
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 38 percent done.
PNPLA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.852581e-02	ci left: 4.987503e-01	ci right 5.184447e-01	k: 5086	n:10000
Cons ci ratio: 5.726153e-02	ci left: 3.098686e-01	ci right 3.282369e-01	k: 3190	n:10000
KS ci ratio: 3.803565e-02	ci left: 5.051514e-01	ci right 5.248398e-01	k: 5150	n:10000
PNPLA8   10000 perm   2 sec   (4708 perm/sec)   p_kst 5.150000e-01   p_cons 3.190000e-01   p_joint 5.086000e-01

Outputting figure to mutsig2_images.part000000000134/PNPLA8.5_2385_10000_0.515_0.319_0.5086.png
                gene_name: PNPLA8
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 40 percent done.
POLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.019975e-02	ci left: 3.691794e-01	ci right 3.882913e-01	k: 3787	n:10000
Cons ci ratio: 7.208946e-02	ci left: 2.199059e-01	ci right 2.364527e-01	k: 2281	n:10000
KS ci ratio: 4.245653e-02	ci left: 4.502943e-01	ci right 4.699290e-01	k: 4601	n:10000
POLD1   10000 perm   2 sec   (4521 perm/sec)   p_kst 4.601000e-01   p_cons 2.281000e-01   p_joint 3.787000e-01

Outputting figure to mutsig2_images.part000000000134/POLD1.5_3428_10000_0.4601_0.2281_0.3787.png
                gene_name: POLD1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 42 percent done.
POLG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.784894e-02	ci left: 8.207633e-01	ci right 8.356450e-01	k: 8283	n:10000
Cons ci ratio: 5.798077e-02	ci left: 3.045120e-01	ci right 3.227967e-01	k: 3136	n:10000
KS ci ratio: 2.419615e-02	ci left: 7.152252e-01	ci right 7.328441e-01	k: 7241	n:10000
POLG   10000 perm   2 sec   (4430 perm/sec)   p_kst 7.241000e-01   p_cons 3.136000e-01   p_joint 8.283000e-01

Outputting figure to mutsig2_images.part000000000134/POLG.5_3808_10000_0.7241_0.3136_0.8283.png
                gene_name: POLG
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 43 percent done.
POLH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.711640e-02	ci left: 8.325641e-01	ci right 8.470374e-01	k: 8399	n:10000
Cons ci ratio: 2.855426e-02	ci left: 6.438786e-01	ci right 6.626321e-01	k: 6533	n:10000
KS ci ratio: 3.486977e-02	ci left: 5.484010e-01	ci right 5.679651e-01	k: 5582	n:10000
POLH   10000 perm   2 sec   (4697 perm/sec)   p_kst 5.582000e-01   p_cons 6.533000e-01   p_joint 8.399000e-01

Outputting figure to mutsig2_images.part000000000134/POLH.5_2182_10000_0.5582_0.6533_0.8399.png
                gene_name: POLH
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 45 percent done.
PNLIPRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.796730e-02	ci left: 3.046112e-01	ci right 3.228974e-01	k: 3137	n:10000
Cons ci ratio: 9.800946e-02	ci left: 1.311004e-01	ci right 1.447113e-01	k: 1378	n:10000
KS ci ratio: 3.788368e-02	ci left: 5.071521e-01	ci right 5.268380e-01	k: 5170	n:10000
PNLIPRP1   10000 perm   2 sec   (5575 perm/sec)   p_kst 5.170000e-01   p_cons 1.378000e-01   p_joint 3.137000e-01

Outputting figure to mutsig2_images.part000000000134/PNLIPRP1.4_1452_10000_0.517_0.1378_0.3137.png
                gene_name: PNLIPRP1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 47 percent done.
PNLIPRP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.853449e-02	ci left: 1.565950e-01	ci right 1.712014e-01	k: 1638	n:10000
Cons ci ratio: 1.064023e-01	ci left: 1.131062e-01	ci right 1.259164e-01	k: 1194	n:10000
KS ci ratio: 8.062157e-02	ci left: 1.834349e-01	ci right 1.989455e-01	k: 1911	n:10000
PNLIPRP3   10000 perm   2 sec   (4148 perm/sec)   p_kst 1.911000e-01   p_cons 1.194000e-01   p_joint 1.638000e-01

Joint ci ratio: 5.692600e-02	ci left: 1.861658e-01	ci right 1.971240e-01	k: 3832	n:20000
Cons ci ratio: 7.210431e-02	ci left: 1.240883e-01	ci right 1.334200e-01	k: 2574	n:20000
KS ci ratio: 5.698118e-02	ci left: 1.858691e-01	ci right 1.968208e-01	k: 3826	n:20000
PNLIPRP3   20000 perm   5 sec   (4242 perm/sec)   p_kst 1.913000e-01   p_cons 1.287000e-01   p_joint 1.916000e-01

Outputting figure to mutsig2_images.part000000000134/PNLIPRP3.4_1452_20000_0.1913_0.1287_0.1916.png
                gene_name: PNLIPRP3
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 49 percent done.
PNMA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.317267e-02	ci left: 4.420111e-01	ci right 4.616170e-01	k: 4518	n:10000
Cons ci ratio: 2.833402e-02	ci left: 6.473999e-01	ci right 6.661087e-01	k: 6568	n:10000
KS ci ratio: 7.621287e-02	ci left: 2.011651e-01	ci right 2.172047e-01	k: 2091	n:10000
PNMA5   10000 perm   2 sec   (5631 perm/sec)   p_kst 2.091000e-01   p_cons 6.568000e-01   p_joint 4.518000e-01

Outputting figure to mutsig2_images.part000000000134/PNMA5.4_1351_10000_0.2091_0.6568_0.4518.png
                gene_name: PNMA5
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 51 percent done.
PNPLA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.416207e-02	ci left: 4.308381e-01	ci right 4.503965e-01	k: 4406	n:10000
Cons ci ratio: 6.230261e-02	ci left: 2.746806e-01	ci right 2.924457e-01	k: 2835	n:10000
KS ci ratio: 3.288380e-02	ci left: 5.771752e-01	ci right 5.965742e-01	k: 5869	n:10000
PNPLA3   10000 perm   2 sec   (5397 perm/sec)   p_kst 5.869000e-01   p_cons 2.835000e-01   p_joint 4.406000e-01

Outputting figure to mutsig2_images.part000000000134/PNPLA3.4_1482_10000_0.5869_0.2835_0.4406.png
                gene_name: PNPLA3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 53 percent done.
POC1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.469983e-02	ci left: 1.688761e-01	ci right 1.839129e-01	k: 1763	n:10000
Cons ci ratio: 1.900600e-01	ci left: 3.691153e-02	ci right 4.475883e-02	k: 407	n:10000
KS ci ratio: 2.513674e-02	ci left: 6.995839e-01	ci right 7.174944e-01	k: 7086	n:10000
POC1B   10000 perm   2 sec   (5363 perm/sec)   p_kst 7.086000e-01   p_cons 4.070000e-02   p_joint 1.763000e-01

Joint ci ratio: 5.788060e-02	ci left: 1.811226e-01	ci right 1.919687e-01	k: 3730	n:20000
Cons ci ratio: 1.345678e-01	ci left: 3.795510e-02	ci right 4.347944e-02	k: 813	n:20000
KS ci ratio: 1.764577e-02	ci left: 7.052662e-01	ci right 7.178723e-01	k: 14232	n:20000
POC1B   20000 perm   4 sec   (4882 perm/sec)   p_kst 7.116000e-01   p_cons 4.065000e-02   p_joint 1.865000e-01

Joint ci ratio: 4.632317e-02	ci left: 1.882170e-01	ci right 1.971759e-01	k: 5780	n:30000
Cons ci ratio: 1.096412e-01	ci left: 3.862178e-02	ci right 4.313435e-02	k: 1225	n:30000
KS ci ratio: 1.438209e-02	ci left: 7.071739e-01	ci right 7.174516e-01	k: 21370	n:30000
POC1B   30000 perm   6 sec   (4679 perm/sec)   p_kst 7.123333e-01   p_cons 4.083333e-02   p_joint 1.926667e-01

Joint ci ratio: 4.263725e-02	ci left: 1.707174e-01	ci right 1.781799e-01	k: 6977	n:40000
Cons ci ratio: 9.589410e-02	ci left: 3.817386e-02	ci right 4.204327e-02	k: 1603	n:40000
KS ci ratio: 1.248823e-02	ci left: 7.067812e-01	ci right 7.156881e-01	k: 28450	n:40000
POC1B   40000 perm   9 sec   (4579 perm/sec)   p_kst 7.112500e-01   p_cons 4.007500e-02   p_joint 1.744250e-01

Outputting figure to mutsig2_images.part000000000134/POC1B.4_1485_40000_0.71125_0.040075_0.17442.png
                gene_name: POC1B
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 55 percent done.
PODXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.091423e-02	ci left: 6.068871e-01	ci right 6.260450e-01	k: 6165	n:10000
Cons ci ratio: 4.764275e-02	ci left: 3.939633e-01	ci right 4.132929e-01	k: 4036	n:10000
KS ci ratio: 3.546029e-02	ci left: 5.400858e-01	ci right 5.596852e-01	k: 5499	n:10000
PODXL2   10000 perm   2 sec   (5141 perm/sec)   p_kst 5.499000e-01   p_cons 4.036000e-01   p_joint 6.165000e-01

Outputting figure to mutsig2_images.part000000000134/PODXL2.4_1850_10000_0.5499_0.4036_0.6165.png
                gene_name: PODXL2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 57 percent done.
POLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.678422e-02	ci left: 6.724682e-01	ci right 6.908258e-01	k: 6817	n:10000
Cons ci ratio: 6.295281e-02	ci left: 2.705218e-01	ci right 2.882069e-01	k: 2793	n:10000
KS ci ratio: 2.682125e-02	ci left: 6.718638e-01	ci right 6.902306e-01	k: 6811	n:10000
POLN   10000 perm   2 sec   (4409 perm/sec)   p_kst 6.811000e-01   p_cons 2.793000e-01   p_joint 6.817000e-01

Outputting figure to mutsig2_images.part000000000134/POLN.4_2799_10000_0.6811_0.2793_0.6817.png
                gene_name: POLN
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 58 percent done.
PNPLA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.002121e-01	ci left: 1.260106e-01	ci right 1.394041e-01	k: 1326	n:10000
Cons ci ratio: 1.846975e-01	ci left: 3.910770e-02	ci right 4.716118e-02	k: 430	n:10000
KS ci ratio: 1.897407e-02	ci left: 8.023742e-01	ci right 8.178447e-01	k: 8102	n:10000
PNPLA1   10000 perm   2 sec   (5685 perm/sec)   p_kst 8.102000e-01   p_cons 4.300000e-02   p_joint 1.326000e-01

Joint ci ratio: 6.546968e-02	ci left: 1.470008e-01	ci right 1.570006e-01	k: 3039	n:20000
Cons ci ratio: 1.287420e-01	ci left: 4.144132e-02	ci right 4.719210e-02	k: 885	n:20000
KS ci ratio: 1.348173e-02	ci left: 8.031792e-01	ci right 8.141309e-01	k: 16174	n:20000
PNPLA1   20000 perm   4 sec   (5062 perm/sec)   p_kst 8.087000e-01   p_cons 4.425000e-02   p_joint 1.519500e-01

Joint ci ratio: 7.831975e-02	ci left: 7.404042e-02	ci right 8.010845e-02	k: 2311	n:30000
Cons ci ratio: 1.045841e-01	ci left: 4.238916e-02	ci right 4.709951e-02	k: 1341	n:30000
KS ci ratio: 1.101718e-02	ci left: 8.039337e-01	ci right 8.128731e-01	k: 24253	n:30000
PNPLA1   30000 perm   6 sec   (4838 perm/sec)   p_kst 8.084333e-01   p_cons 4.470000e-02   p_joint 7.703333e-02

Joint ci ratio: 5.100863e-02	ci left: 1.253587e-01	ci right 1.319453e-01	k: 5145	n:40000
Cons ci ratio: 9.165953e-02	ci left: 4.171734e-02	ci right 4.574923e-02	k: 1748	n:40000
KS ci ratio: 9.534444e-03	ci left: 8.047603e-01	ci right 8.124949e-01	k: 32346	n:40000
PNPLA1   40000 perm   9 sec   (4675 perm/sec)   p_kst 8.086500e-01   p_cons 4.370000e-02   p_joint 1.286250e-01

Outputting figure to mutsig2_images.part000000000134/PNPLA1.3_1658_40000_0.80865_0.0437_0.12862.png
                gene_name: PNPLA1
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.044 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 60 percent done.
PNPLA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.574653e-02	ci left: 4.135897e-01	ci right 4.330550e-01	k: 4233	n:10000
Cons ci ratio: 5.920124e-02	ci left: 2.956866e-01	ci right 3.138273e-01	k: 3047	n:10000
KS ci ratio: 4.766254e-02	ci left: 3.937641e-01	ci right 4.130922e-01	k: 4034	n:10000
PNPLA4   10000 perm   2 sec   (5767 perm/sec)   p_kst 4.034000e-01   p_cons 3.047000e-01   p_joint 4.233000e-01

Outputting figure to mutsig2_images.part000000000134/PNPLA4.3_786_10000_0.4034_0.3047_0.4233.png
                gene_name: PNPLA4
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 62 percent done.
PNPLA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.869571e-02	ci left: 4.965503e-01	ci right 5.162460e-01	k: 5064	n:10000
Cons ci ratio: 1.017911e-02	ci left: 9.319559e-01	ci right 9.415877e-01	k: 9369	n:10000
KS ci ratio: 5.690767e-02	ci left: 3.125475e-01	ci right 3.309565e-01	k: 3217	n:10000
PNPLA5   10000 perm   2 sec   (5705 perm/sec)   p_kst 3.217000e-01   p_cons 9.369000e-01   p_joint 5.064000e-01

Outputting figure to mutsig2_images.part000000000134/PNPLA5.3_1326_10000_0.3217_0.9369_0.5064.png
                gene_name: PNPLA5
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 64 percent done.
PNPLA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.142107e-01	ci left: 2.892165e-02	ci right 3.595419e-02	k: 323	n:10000
Cons ci ratio: 6.911164e-02	ci left: 2.349160e-01	ci right 2.518337e-01	k: 2433	n:10000
KS ci ratio: 2.625735e-01	ci left: 1.893425e-02	ci right 2.474894e-02	k: 217	n:10000
PNPLA6   10000 perm   2 sec   (4543 perm/sec)   p_kst 2.170000e-02   p_cons 2.433000e-01   p_joint 3.230000e-02

Joint ci ratio: 9.053494e-02	ci left: 8.180703e-02	ci right 8.961391e-02	k: 1713	n:20000
Cons ci ratio: 4.785646e-02	ci left: 2.451512e-01	ci right 2.572212e-01	k: 5023	n:20000
KS ci ratio: 1.775177e-01	ci left: 2.168415e-02	ci right 2.595584e-02	k: 475	n:20000
PNPLA6   20000 perm   5 sec   (4116 perm/sec)   p_kst 2.375000e-02   p_cons 2.511500e-01   p_joint 8.565000e-02

Joint ci ratio: 1.240748e-01	ci left: 3.019881e-02	ci right 3.422578e-02	k: 965	n:30000
Cons ci ratio: 3.891956e-02	ci left: 2.477569e-01	ci right 2.576243e-01	k: 7580	n:30000
KS ci ratio: 1.501990e-01	ci left: 2.053041e-02	ci right 2.389633e-02	k: 665	n:30000
PNPLA6   30000 perm   8 sec   (3937 perm/sec)   p_kst 2.216667e-02   p_cons 2.526667e-01   p_joint 3.216667e-02

Joint ci ratio: 1.137667e-01	ci left: 2.718282e-02	ci right 3.048606e-02	k: 1152	n:40000
Cons ci ratio: 3.372547e-02	ci left: 2.481984e-01	ci right 2.567376e-01	k: 10098	n:40000
KS ci ratio: 1.291134e-01	ci left: 2.106890e-02	ci right 2.400098e-02	k: 900	n:40000
PNPLA6   40000 perm   10 sec   (3824 perm/sec)   p_kst 2.250000e-02   p_cons 2.524500e-01   p_joint 2.880000e-02

Joint ci ratio: 8.808451e-02	ci left: 3.641929e-02	ci right 3.979461e-02	k: 1904	n:50000
Cons ci ratio: 3.009921e-02	ci left: 2.494725e-01	ci right 2.571162e-01	k: 12664	n:50000
KS ci ratio: 1.148197e-01	ci left: 2.147054e-02	ci right 2.410527e-02	k: 1138	n:50000
PNPLA6   50000 perm   13 sec   (3710 perm/sec)   p_kst 2.276000e-02   p_cons 2.532800e-01   p_joint 3.808000e-02

Joint ci ratio: 8.549683e-02	ci left: 3.240091e-02	ci right 3.531107e-02	k: 2030	n:60000
Cons ci ratio: 2.749852e-02	ci left: 2.495086e-01	ci right 2.564820e-01	k: 15179	n:60000
KS ci ratio: 1.051230e-01	ci left: 2.145805e-02	ci right 2.385509e-02	k: 1358	n:60000
PNPLA6   60000 perm   16 sec   (3638 perm/sec)   p_kst 2.263333e-02   p_cons 2.529833e-01   p_joint 3.383333e-02

Joint ci ratio: 8.254130e-02	ci left: 2.992438e-02	ci right 3.251467e-02	k: 2184	n:70000
Cons ci ratio: 2.548952e-02	ci left: 2.493133e-01	ci right 2.557644e-01	k: 17677	n:70000
KS ci ratio: 9.693489e-02	ci left: 2.172086e-02	ci right 2.394750e-02	k: 1597	n:70000
PNPLA6   70000 perm   20 sec   (3580 perm/sec)   p_kst 2.281429e-02   p_cons 2.525286e-01   p_joint 3.120000e-02

Outputting figure to mutsig2_images.part000000000134/PNPLA6.3_4260_70000_0.022814_0.25253_0.0312.png
                gene_name: PNPLA6
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.033 

Current progress: 66 percent done.
PODXL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.856483e-03	ci left: 9.668882e-01	ci right 9.736342e-01	k: 9704	n:10000
Cons ci ratio: 5.556630e-02	ci left: 3.229685e-01	ci right 3.415293e-01	k: 3322	n:10000
KS ci ratio: 1.483260e-02	ci left: 8.681543e-01	ci right 8.812266e-01	k: 8748	n:10000
PODXL   10000 perm   2 sec   (5809 perm/sec)   p_kst 8.748000e-01   p_cons 3.322000e-01   p_joint 9.704000e-01

Outputting figure to mutsig2_images.part000000000134/PODXL.3_1713_10000_0.8748_0.3322_0.9704.png
                gene_name: PODXL
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 68 percent done.
POLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.208232e-02	ci left: 9.076136e-01	ci right 9.187443e-01	k: 9133	n:10000
Cons ci ratio: 1.407835e-02	ci left: 8.794036e-01	ci right 8.919707e-01	k: 8858	n:10000
KS ci ratio: 4.622758e-02	ci left: 4.085072e-01	ci right 4.279405e-01	k: 4182	n:10000
POLB   10000 perm   2 sec   (5793 perm/sec)   p_kst 4.182000e-01   p_cons 8.858000e-01   p_joint 9.133000e-01

Outputting figure to mutsig2_images.part000000000134/POLB.3_1064_10000_0.4182_0.8858_0.9133.png
                gene_name: POLB
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 70 percent done.
POLK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.019629e-02	ci left: 9.317489e-01	ci right 9.413948e-01	k: 9367	n:10000
KS ci ratio: 7.595156e-03	ci left: 9.600562e-01	ci right 9.674704e-01	k: 9639	n:10000
POLK   10000 perm   2 sec   (4666 perm/sec)   p_kst 9.639000e-01   p_cons 9.367000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000134/POLK.3_2669_10000_0.9639_0.9367_1.png
                gene_name: POLK
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
POLR3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.697292e-02	ci left: 3.120513e-01	ci right 3.304529e-01	k: 3212	n:10000
Cons ci ratio: 2.259555e-02	ci left: 7.419977e-01	ci right 7.590561e-01	k: 7506	n:10000
KS ci ratio: 1.283610e-01	ci left: 7.979957e-02	ci right 9.084340e-02	k: 852	n:10000
POLR3D   10000 perm   2 sec   (5100 perm/sec)   p_kst 8.520000e-02   p_cons 7.506000e-01   p_joint 3.212000e-01

Joint ci ratio: 4.103203e-02	ci left: 3.068742e-01	ci right 3.197801e-01	k: 6266	n:20000
Cons ci ratio: 1.663066e-02	ci left: 7.291268e-01	ci right 7.414047e-01	k: 14706	n:20000
KS ci ratio: 8.827251e-02	ci left: 8.577461e-02	ci right 9.374513e-02	k: 1794	n:20000
POLR3D   20000 perm   4 sec   (4743 perm/sec)   p_kst 8.970000e-02   p_cons 7.353000e-01   p_joint 3.133000e-01

Outputting figure to mutsig2_images.part000000000134/POLR3D.3_1229_20000_0.0897_0.7353_0.3133.png
                gene_name: POLR3D
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 74 percent done.
PNLIPRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.290300e-02	ci left: 8.963130e-01	ci right 9.080515e-01	k: 9023	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
PNLIPRP2   10000 perm   2 sec   (5304 perm/sec)   p_kst 1   p_cons 9.023000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000134/PNLIPRP2.2_1464_10000_1_0.9023_1.png
                gene_name: PNLIPRP2
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
PNMA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.789526e-02	ci left: 2.414380e-01	ci right 2.585078e-01	k: 2499	n:10000
Cons ci ratio: 8.885890e-02	ci left: 1.556131e-01	ci right 1.701838e-01	k: 1628	n:10000
KS ci ratio: 1.780502e-02	ci left: 8.214750e-01	ci right 8.363328e-01	k: 8290	n:10000
PNMA2   10000 perm   2 sec   (5596 perm/sec)   p_kst 8.290000e-01   p_cons 1.628000e-01   p_joint 2.499000e-01

Outputting figure to mutsig2_images.part000000000134/PNMA2.2_1099_10000_0.829_0.1628_0.2499.png
                gene_name: PNMA2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 77 percent done.
PNMA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.169206e-03	ci left: 9.436740e-01	ci right 9.524627e-01	k: 9482	n:10000
KS ci ratio: 2.095822e-02	ci left: 7.694204e-01	ci right 7.858176e-01	k: 7777	n:10000
PNMA3   10000 perm   2 sec   (5496 perm/sec)   p_kst 7.777000e-01   p_cons 9.482000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000134/PNMA3.2_1396_10000_0.7777_0.9482_1.png
                gene_name: PNMA3
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
PNMAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.215023e-02	ci left: 4.538878e-01	ci right 4.735333e-01	k: 4637	n:10000
Cons ci ratio: 5.099836e-02	ci left: 3.618190e-01	ci right 3.808560e-01	k: 3713	n:10000
KS ci ratio: 3.448266e-02	ci left: 5.539127e-01	ci right 5.734502e-01	k: 5637	n:10000
PNMAL2   10000 perm   2 sec   (5753 perm/sec)   p_kst 5.637000e-01   p_cons 3.713000e-01   p_joint 4.637000e-01

Outputting figure to mutsig2_images.part000000000134/PNMAL2.2_1912_10000_0.5637_0.3713_0.4637.png
                gene_name: PNMAL2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 81 percent done.
POC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.471812e-02	ci left: 2.596344e-01	ci right 2.771008e-01	k: 2683	n:10000
Cons ci ratio: 5.834631e-02	ci left: 3.018342e-01	ci right 3.200760e-01	k: 3109	n:10000
KS ci ratio: 8.522827e-02	ci left: 1.671068e-01	ci right 1.820833e-01	k: 1745	n:10000
POC5   10000 perm   2 sec   (5794 perm/sec)   p_kst 1.745000e-01   p_cons 3.109000e-01   p_joint 2.683000e-01

Outputting figure to mutsig2_images.part000000000134/POC5.2_1785_10000_0.1745_0.3109_0.2683.png
                gene_name: POC5
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 83 percent done.
PODNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.347034e-02	ci left: 5.685494e-01	ci right 5.880049e-01	k: 5783	n:10000
KS ci ratio: 8.051746e-02	ci left: 1.838286e-01	ci right 1.993515e-01	k: 1915	n:10000
PODNL1   10000 perm   2 sec   (6116 perm/sec)   p_kst 1.915000e-01   p_cons 5.783000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000134/PODNL1.2_1593_10000_0.1915_0.5783_1.png
                gene_name: PODNL1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
POF1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.032447e-02	ci left: 9.301971e-01	ci right 9.399476e-01	k: 9352	n:10000
Cons ci ratio: 2.682125e-02	ci left: 6.718638e-01	ci right 6.902306e-01	k: 6811	n:10000
KS ci ratio: 2.261969e-02	ci left: 7.415933e-01	ci right 7.586608e-01	k: 7502	n:10000
POF1B   10000 perm   2 sec   (5306 perm/sec)   p_kst 7.502000e-01   p_cons 6.811000e-01   p_joint 9.352000e-01

Outputting figure to mutsig2_images.part000000000134/POF1B.2_1834_10000_0.7502_0.6811_0.9352.png
                gene_name: POF1B
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 87 percent done.
POLA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.450458e-02	ci left: 2.609207e-01	ci right 2.784136e-01	k: 2696	n:10000
KS ci ratio: 1.782385e-02	ci left: 8.211700e-01	ci right 8.360381e-01	k: 8287	n:10000
POLA2   10000 perm   2 sec   (5996 perm/sec)   p_kst 8.287000e-01   p_cons 2.696000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000134/POLA2.2_1869_10000_0.8287_0.2696_1.png
                gene_name: POLA2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
POLD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.604756e-02	ci left: 8.494749e-01	ci right 8.633167e-01	k: 8565	n:10000
Cons ci ratio: 4.325118e-02	ci left: 4.411130e-01	ci right 4.607156e-01	k: 4509	n:10000
KS ci ratio: 3.997784e-02	ci left: 4.802562e-01	ci right 4.999496e-01	k: 4901	n:10000
POLD3   10000 perm   2 sec   (6170 perm/sec)   p_kst 4.901000e-01   p_cons 4.509000e-01   p_joint 8.565000e-01

Outputting figure to mutsig2_images.part000000000134/POLD3.2_1449_10000_0.4901_0.4509_0.8565.png
                gene_name: POLD3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 91 percent done.
POLM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.037421e-02	ci left: 6.152251e-01	ci right 6.343022e-01	k: 6248	n:10000
Cons ci ratio: 2.095216e-02	ci left: 7.695217e-01	ci right 7.859162e-01	k: 7778	n:10000
KS ci ratio: 7.250119e-02	ci left: 2.179321e-01	ci right 2.344277e-01	k: 2261	n:10000
POLM   10000 perm   2 sec   (5473 perm/sec)   p_kst 2.261000e-01   p_cons 7.778000e-01   p_joint 6.248000e-01

Outputting figure to mutsig2_images.part000000000134/POLM.2_1529_10000_0.2261_0.7778_0.6248.png
                gene_name: POLM
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 92 percent done.
POLR1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.913930e-02	ci left: 4.908512e-01	ci right 5.105484e-01	k: 5007	n:10000
Cons ci ratio: 7.602909e-02	ci left: 2.019537e-01	ci right 2.180156e-01	k: 2099	n:10000
KS ci ratio: 1.994303e-02	ci left: 7.863438e-01	ci right 8.022844e-01	k: 7944	n:10000
POLR1C   10000 perm   2 sec   (5949 perm/sec)   p_kst 7.944000e-01   p_cons 2.099000e-01   p_joint 5.007000e-01

Outputting figure to mutsig2_images.part000000000134/POLR1C.2_1188_10000_0.7944_0.2099_0.5007.png
                gene_name: POLR1C
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 94 percent done.
POLR1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.453334e-02	ci left: 8.726519e-01	ci right 8.855263e-01	k: 8792	n:10000
Cons ci ratio: 1.375648e-02	ci left: 8.841132e-01	ci right 8.964584e-01	k: 8904	n:10000
KS ci ratio: 1.771079e-02	ci left: 8.230004e-01	ci right 8.378066e-01	k: 8305	n:10000
POLR1D   10000 perm   2 sec   (5824 perm/sec)   p_kst 8.305000e-01   p_cons 8.904000e-01   p_joint 8.792000e-01

Outputting figure to mutsig2_images.part000000000134/POLR1D.2_761_10000_0.8305_0.8904_0.8792.png
                gene_name: POLR1D
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 96 percent done.
POLR1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.569957e-03	ci left: 9.773822e-01	ci right 9.829331e-01	k: 9803	n:10000
Cons ci ratio: 3.924902e-02	ci left: 4.894516e-01	ci right 5.091488e-01	k: 4993	n:10000
KS ci ratio: 7.779080e-02	ci left: 1.945626e-01	ci right 2.104111e-01	k: 2024	n:10000
POLR1E   10000 perm   2 sec   (5382 perm/sec)   p_kst 2.024000e-01   p_cons 4.993000e-01   p_joint 9.803000e-01

Outputting figure to mutsig2_images.part000000000134/POLR1E.2_1308_10000_0.2024_0.4993_0.9803.png
                gene_name: POLR1E
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 98 percent done.
POLR3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.713756e-03	ci left: 9.891692e-01	ci right 9.929363e-01	k: 9912	n:10000
Cons ci ratio: 3.318984e-02	ci left: 5.726613e-01	ci right 5.920907e-01	k: 5824	n:10000
KS ci ratio: 3.165106e-02	ci left: 5.956404e-01	ci right 6.148982e-01	k: 6053	n:10000
POLR3C   10000 perm   2 sec   (5469 perm/sec)   p_kst 6.053000e-01   p_cons 5.824000e-01   p_joint 9.912000e-01

Outputting figure to mutsig2_images.part000000000134/POLR3C.2_1661_10000_0.6053_0.5824_0.9912.png
                gene_name: POLR3C
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000134
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 134 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1431>
Subject: Job 9894085: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1431>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000135> was used as the working directory.
Started at Sat Oct  6 00:25:10 2012
Results reported at Sat Oct  6 00:33:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000135.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000135.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 135  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000135.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    572.16 sec.
    Max Memory :      3565 MB
    Max Swap   :      5951 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
135
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 135
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 135: processing genes 12081 - 12170
Calculating significance of each gene.
Using projection method.
12081	POLR3H	5.891667e-01
12082	POLR3K	5.478572e-01
12083	POLRMT	9.991055e-01
12084	POM121	6.275223e-01
12085	POM121C	9.011165e-01
12086	POM121L12	2.259801e-01
12087	POMC	3.780938e-01
12088	POMGNT1	8.337578e-01
12089	POMP	1.710253e-01
12090	POMT1	6.271257e-01
12091	POMT2	9.856596e-01
12092	POMZP3	1
12093	PON1	8.532054e-03
12094	PON2	2.448127e-01
12095	PON3	2.895278e-01
12096	POP1	2.653873e-01
12097	POP4	1
12098	POP5	5.508528e-01
12099	POP7	1
12100	POPDC2	8.677451e-01
12101	POPDC3	5.266475e-02
12102	POR	1
12103	PORCN	6.417711e-01
12104	POSTN	2.417713e-04
12105	POT1	5.471945e-01
12106	POTEA	7.273964e-01
12107	POTEB	1.488355e-03
12108	POTED	2.309321e-01
12109	POTEE	2.733385e-01
12110	POTEF	8.220062e-01
12111	POTEG	2.935768e-01
12112	POTEH	1
12113	POU1F1	1.577948e-01
12114	POU2AF1	1
12115	POU2F1	9.526958e-01
12116	POU2F2	3.063520e-01
12117	POU2F3	4.557190e-01
12118	POU3F1	1
12119	POU3F2	7.630309e-01
12120	POU3F3	1
12121	POU3F4	6.343811e-03
12122	POU4F1	6.049867e-01
12123	POU4F2	3.175977e-03
12124	POU4F3	3.600032e-01
12125	POU5F1	1
12126	POU5F2	2.847847e-01
12127	POU6F1	2.081959e-01
12128	POU6F2	8.410205e-01
12129	PPA1	3.455304e-01
12130	PPA2	2.904557e-01
12131	PPAN	1
12132	PPAN-P2RY11	9.898549e-01
12133	PPAP2A	1
12134	PPAP2B	7.980797e-01
12135	PPAP2C	1
12136	PPAPDC1A	2.329081e-01
12137	PPAPDC1B	1
12138	PPAPDC2	6.502983e-01
12139	PPAPDC3	7.894959e-01
12140	PPARA	8.815185e-01
12141	PPARD	7.188960e-01
12142	PPARG	8.492933e-01
12143	PPARGC1A	3.631734e-01
12144	PPARGC1B	9.807511e-01
12145	PPAT	3.084513e-02
12146	PPBP	1
12147	PPCDC	1
12148	PPCS	6.753001e-01
12149	PPDPF	1
12150	PPEF1	2.589332e-01
12151	PPEF2	4.140496e-01
12152	PPFIA1	5.223662e-01
12153	PPFIA2	1.176644e-01
12154	PPFIA3	9.996731e-01
12155	PPFIA4	1.821338e-01
12156	PPFIBP1	4.431085e-01
12157	PPFIBP2	4.129651e-01
12158	PPHLN1	5.760250e-01
12159	PPIA	1
12160	PPIAL4G	1
12161	PPIB	2.863177e-01
12162	PPIC	1
12163	PPID	3.622506e-01
12164	PPIE	7.361296e-01
12165	PPIF	1
12166	PPIG	8.890830e-02
12167	PPIH	5.649484e-01
12168	PPIL1	1
12169	PPIL2	9.263945e-01
12170	PPIL3	1
Done

Running MutSig 2:
Scatter job 135: processing genes 12081 - 12170
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
POSTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.320203e-02	ci left: 1.432503e-01	ci right 1.573541e-01	k: 1502	n:10000
Cons ci ratio: 4.980742e-02	ci left: 3.728605e-01	ci right 3.920080e-01	k: 3824	n:10000
KS ci ratio: 1.299497e-01	ci left: 7.795586e-02	ci right 8.888826e-02	k: 833	n:10000
POSTN   10000 perm   3 sec   (3655 perm/sec)   p_kst 8.330000e-02   p_cons 3.824000e-01   p_joint 1.502000e-01

Joint ci ratio: 7.115585e-02	ci left: 1.270421e-01	ci right 1.364652e-01	k: 2634	n:20000
Cons ci ratio: 3.525252e-02	ci left: 3.752588e-01	ci right 3.887755e-01	k: 7640	n:20000
KS ci ratio: 9.252709e-02	ci left: 7.852716e-02	ci right 8.619478e-02	k: 1646	n:20000
POSTN   20000 perm   9 sec   (2235 perm/sec)   p_kst 8.230000e-02   p_cons 3.820000e-01   p_joint 1.317000e-01

Outputting figure to mutsig2_images.part000000000135/POSTN.13_2603_20000_0.0823_0.382_0.1317.png
                gene_name: POSTN
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 2 percent done.
POTEB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.582507e-02	ci left: 8.529423e-01	ci right 8.666473e-01	k: 8599	n:10000
Cons ci ratio: 4.739627e-02	ci left: 3.964531e-01	ci right 4.158017e-01	k: 4061	n:10000
KS ci ratio: 8.895760e-03	ci left: 9.466899e-01	ci right 9.552449e-01	k: 9511	n:10000
POTEB   10000 perm   2 sec   (4336 perm/sec)   p_kst 9.511000e-01   p_cons 4.061000e-01   p_joint 8.599000e-01

Outputting figure to mutsig2_images.part000000000135/POTEB.12_1790_10000_0.9511_0.4061_0.8599.png
                gene_name: POTEB
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 4 percent done.
PPFIA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.543166e-02	ci left: 5.404864e-01	ci right 5.600843e-01	k: 5503	n:10000
Cons ci ratio: 4.176252e-02	ci left: 4.584803e-01	ci right 4.781381e-01	k: 4683	n:10000
KS ci ratio: 5.215377e-02	ci left: 3.514787e-01	ci right 3.704024e-01	k: 3609	n:10000
PPFIA2   10000 perm   3 sec   (3317 perm/sec)   p_kst 3.609000e-01   p_cons 4.683000e-01   p_joint 5.503000e-01

Outputting figure to mutsig2_images.part000000000135/PPFIA2.12_3894_10000_0.3609_0.4683_0.5503.png
                gene_name: PPFIA2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 6 percent done.
POTED
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.944141e-02	ci left: 7.946610e-01	ci right 8.103624e-01	k: 8026	n:10000
Cons ci ratio: 2.264382e-02	ci left: 7.411889e-01	ci right 7.582654e-01	k: 7498	n:10000
KS ci ratio: 2.419615e-02	ci left: 7.152252e-01	ci right 7.328441e-01	k: 7241	n:10000
POTED   10000 perm   2 sec   (4902 perm/sec)   p_kst 7.241000e-01   p_cons 7.498000e-01   p_joint 8.026000e-01

Outputting figure to mutsig2_images.part000000000135/POTED.9_1799_10000_0.7241_0.7498_0.8026.png
                gene_name: POTED
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 8 percent done.
POU4F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.703224e-02	ci left: 1.334506e-01	ci right 1.471597e-01	k: 1402	n:10000
Cons ci ratio: 8.181399e-02	ci left: 1.790063e-01	ci right 1.943767e-01	k: 1866	n:10000
KS ci ratio: 9.711277e-02	ci left: 1.332547e-01	ci right 1.469557e-01	k: 1400	n:10000
POU4F2   10000 perm   2 sec   (4895 perm/sec)   p_kst 1.400000e-01   p_cons 1.866000e-01   p_joint 1.402000e-01

Outputting figure to mutsig2_images.part000000000135/POU4F2.9_1238_10000_0.14_0.1866_0.1402.png
                gene_name: POU4F2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.15 

Current progress: 10 percent done.
PPFIA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.607094e-02	ci left: 6.841568e-01	ci right 7.023305e-01	k: 6933	n:10000
Cons ci ratio: 1.653384e-02	ci left: 8.418309e-01	ci right 8.559652e-01	k: 8490	n:10000
KS ci ratio: 4.332986e-02	ci left: 4.402151e-01	ci right 4.598141e-01	k: 4500	n:10000
PPFIA1   10000 perm   2 sec   (4490 perm/sec)   p_kst 4.500000e-01   p_cons 8.490000e-01   p_joint 6.933000e-01

Outputting figure to mutsig2_images.part000000000135/PPFIA1.8_3721_10000_0.45_0.849_0.6933.png
                gene_name: PPFIA1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 12 percent done.
POP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.698355e-02	ci left: 5.191594e-01	ci right 5.388237e-01	k: 5290	n:10000
Cons ci ratio: 7.178385e-02	ci left: 2.213865e-01	ci right 2.379712e-01	k: 2296	n:10000
KS ci ratio: 3.175713e-02	ci left: 5.940342e-01	ci right 6.133054e-01	k: 6037	n:10000
POP1   10000 perm   2 sec   (4645 perm/sec)   p_kst 6.037000e-01   p_cons 2.296000e-01   p_joint 5.290000e-01

Outputting figure to mutsig2_images.part000000000135/POP1.7_3135_10000_0.6037_0.2296_0.529.png
                gene_name: POP1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 15 percent done.
POU3F4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.928483e-02	ci left: 1.543368e-01	ci right 1.688609e-01	k: 1615	n:10000
Cons ci ratio: 1.413621e-01	ci left: 6.633192e-02	ci right 7.651945e-02	k: 713	n:10000
KS ci ratio: 7.827576e-02	ci left: 1.925924e-01	ci right 2.083825e-01	k: 2004	n:10000
POU3F4   10000 perm   2 sec   (4881 perm/sec)   p_kst 2.004000e-01   p_cons 7.130000e-02   p_joint 1.615000e-01

Joint ci ratio: 9.396444e-02	ci left: 7.627639e-02	ci right 8.384623e-02	k: 1600	n:20000
Cons ci ratio: 1.062227e-01	ci left: 6.035399e-02	ci right 6.717352e-02	k: 1274	n:20000
KS ci ratio: 5.437644e-02	ci left: 2.006110e-01	ci right 2.118745e-01	k: 4124	n:20000
POU3F4   20000 perm   5 sec   (4375 perm/sec)   p_kst 2.062000e-01   p_cons 6.370000e-02   p_joint 8.000000e-02

Joint ci ratio: 5.403013e-02	ci left: 1.452187e-01	ci right 1.533160e-01	k: 4477	n:30000
Cons ci ratio: 8.458987e-02	ci left: 6.396742e-02	ci right 6.965016e-02	k: 2003	n:30000
KS ci ratio: 4.381249e-02	ci left: 2.059977e-01	ci right 2.152585e-01	k: 6318	n:30000
POU3F4   30000 perm   7 sec   (4173 perm/sec)   p_kst 2.106000e-01   p_cons 6.676667e-02   p_joint 1.492333e-01

Outputting figure to mutsig2_images.part000000000135/POU3F4.7_1090_30000_0.2106_0.066767_0.14923.png
                gene_name: POU3F4
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 17 percent done.
PPIG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.146594e-02	ci left: 5.984516e-01	ci right 6.176854e-01	k: 6081	n:10000
Cons ci ratio: 8.799894e-03	ci left: 9.477308e-01	ci right 9.562034e-01	k: 9521	n:10000
KS ci ratio: 4.820135e-02	ci left: 3.883871e-01	ci right 4.076723e-01	k: 3980	n:10000
PPIG   10000 perm   2 sec   (4518 perm/sec)   p_kst 3.980000e-01   p_cons 9.521000e-01   p_joint 6.081000e-01

Outputting figure to mutsig2_images.part000000000135/PPIG.7_2313_10000_0.398_0.9521_0.6081.png
                gene_name: PPIG
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 19 percent done.
PON1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.088478e-01	ci left: 1.085172e-01	ci right 1.211081e-01	k: 1147	n:10000
Cons ci ratio: 3.633558e-02	ci left: 5.279684e-01	ci right 5.476096e-01	k: 5378	n:10000
KS ci ratio: 1.420057e-01	ci left: 6.575174e-02	ci right 7.590000e-02	k: 707	n:10000
PON1   10000 perm   2 sec   (4810 perm/sec)   p_kst 7.070000e-02   p_cons 5.378000e-01   p_joint 1.147000e-01

Joint ci ratio: 5.552325e-02	ci left: 1.939311e-01	ci right 2.050564e-01	k: 3989	n:20000
Cons ci ratio: 2.579581e-02	ci left: 5.289085e-01	ci right 5.427811e-01	k: 10717	n:20000
KS ci ratio: 9.819427e-02	ci left: 7.016491e-02	ci right 7.745958e-02	k: 1475	n:20000
PON1   20000 perm   5 sec   (4273 perm/sec)   p_kst 7.375000e-02   p_cons 5.358500e-01   p_joint 1.994500e-01

Outputting figure to mutsig2_images.part000000000135/PON1.6_1104_20000_0.07375_0.53585_0.19945.png
                gene_name: PON1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.077 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 21 percent done.
POTEE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.683541e-02	ci left: 5.211612e-01	ci right 5.408207e-01	k: 5310	n:10000
Cons ci ratio: 4.615168e-02	ci left: 4.093044e-01	ci right 4.287428e-01	k: 4190	n:10000
KS ci ratio: 4.199803e-02	ci left: 4.556848e-01	ci right 4.753353e-01	k: 4655	n:10000
POTEE   10000 perm   2 sec   (4352 perm/sec)   p_kst 4.655000e-01   p_cons 4.190000e-01   p_joint 5.310000e-01

Outputting figure to mutsig2_images.part000000000135/POTEE.6_3288_10000_0.4655_0.419_0.531.png
                gene_name: POTEE
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 23 percent done.
PPAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.948898e-02	ci left: 2.329402e-01	ci right 2.498108e-01	k: 2413	n:10000
Cons ci ratio: 1.495415e-02	ci left: 8.663151e-01	ci right 8.794668e-01	k: 8730	n:10000
KS ci ratio: 1.394779e-01	ci left: 6.807308e-02	ci right 7.837719e-02	k: 731	n:10000
PPAT   10000 perm   2 sec   (4792 perm/sec)   p_kst 7.310000e-02   p_cons 8.730000e-01   p_joint 2.413000e-01

Joint ci ratio: 6.840080e-02	ci left: 1.362042e-01	ci right 1.459004e-01	k: 2820	n:20000
Cons ci ratio: 1.047286e-02	ci left: 8.704385e-01	ci right 8.796521e-01	k: 17502	n:20000
KS ci ratio: 1.006834e-01	ci left: 6.689222e-02	ci right 7.403327e-02	k: 1408	n:20000
PPAT   20000 perm   5 sec   (4262 perm/sec)   p_kst 7.040000e-02   p_cons 8.751000e-01   p_joint 1.410000e-01

Joint ci ratio: 5.368532e-02	ci left: 1.468338e-01	ci right 1.549673e-01	k: 4526	n:30000
Cons ci ratio: 8.608042e-03	ci left: 8.698206e-01	ci right 8.773735e-01	k: 26209	n:30000
KS ci ratio: 8.213507e-02	ci left: 6.766100e-02	ci right 7.348916e-02	k: 2116	n:30000
PPAT   30000 perm   7 sec   (4083 perm/sec)   p_kst 7.053333e-02   p_cons 8.736333e-01   p_joint 1.508667e-01

Outputting figure to mutsig2_images.part000000000135/PPAT.6_1598_30000_0.070533_0.87363_0.15087.png
                gene_name: PPAT
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 25 percent done.
PPEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.154896e-01	ci left: 9.730358e-02	ci right 1.093286e-01	k: 1032	n:10000
Cons ci ratio: 3.318302e-02	ci left: 5.727616e-01	ci right 5.921903e-01	k: 5825	n:10000
KS ci ratio: 1.818499e-01	ci left: 4.035041e-02	ci right 4.851765e-02	k: 443	n:10000
PPEF2   10000 perm   2 sec   (4947 perm/sec)   p_kst 4.430000e-02   p_cons 5.825000e-01   p_joint 1.032000e-01

Joint ci ratio: 8.702652e-02	ci left: 8.807791e-02	ci right 9.614113e-02	k: 1841	n:20000
Cons ci ratio: 2.405399e-02	ci left: 5.635047e-01	ci right 5.772748e-01	k: 11408	n:20000
KS ci ratio: 1.285145e-01	ci left: 4.158670e-02	ci right 4.734668e-02	k: 888	n:20000
PPEF2   20000 perm   5 sec   (4376 perm/sec)   p_kst 4.440000e-02   p_cons 5.704000e-01   p_joint 9.205000e-02

Joint ci ratio: 7.112823e-02	ci left: 8.865398e-02	ci right 9.522529e-02	k: 2757	n:30000
Cons ci ratio: 1.931242e-02	ci left: 5.730218e-01	ci right 5.842297e-01	k: 17359	n:30000
KS ci ratio: 1.049942e-01	ci left: 4.206419e-02	ci right 4.675789e-02	k: 1331	n:30000
PPEF2   30000 perm   7 sec   (4215 perm/sec)   p_kst 4.436667e-02   p_cons 5.786333e-01   p_joint 9.190000e-02

Joint ci ratio: 6.706018e-02	ci left: 7.605474e-02	ci right 8.135661e-02	k: 3147	n:40000
Cons ci ratio: 1.639503e-02	ci left: 5.834834e-01	ci right 5.931538e-01	k: 23533	n:40000
KS ci ratio: 9.084775e-02	ci left: 4.245096e-02	ci right 4.651550e-02	k: 1778	n:40000
PPEF2   40000 perm   10 sec   (4085 perm/sec)   p_kst 4.445000e-02   p_cons 5.883250e-01   p_joint 7.867500e-02

Outputting figure to mutsig2_images.part000000000135/PPEF2.6_2326_40000_0.04445_0.58832_0.078675.png
                gene_name: PPEF2
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.081 

Current progress: 27 percent done.
PPFIA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.909800e-02	ci left: 3.796273e-01	ci right 3.988373e-01	k: 3892	n:10000
Cons ci ratio: 7.252190e-02	ci left: 2.178334e-01	ci right 2.343265e-01	k: 2260	n:10000
KS ci ratio: 3.911583e-02	ci left: 4.911511e-01	ci right 5.108483e-01	k: 5010	n:10000
PPFIA4   10000 perm   2 sec   (5110 perm/sec)   p_kst 5.010000e-01   p_cons 2.260000e-01   p_joint 3.892000e-01

Outputting figure to mutsig2_images.part000000000135/PPFIA4.6_2174_10000_0.501_0.226_0.3892.png
                gene_name: PPFIA4
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 29 percent done.
PPFIBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.121662e-02	ci left: 2.818121e-01	ci right 2.997100e-01	k: 2907	n:10000
Cons ci ratio: 3.269431e-02	ci left: 5.799842e-01	ci right 5.993635e-01	k: 5897	n:10000
KS ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
PPFIBP1   10000 perm   2 sec   (4025 perm/sec)   p_kst 1.890000e-01   p_cons 5.897000e-01   p_joint 2.907000e-01

Outputting figure to mutsig2_images.part000000000135/PPFIBP1.6_3172_10000_0.189_0.5897_0.2907.png
                gene_name: PPFIBP1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 31 percent done.
POU1F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.223032e-02	ci left: 5.869078e-01	ci right 6.062359e-01	k: 5966	n:10000
KS ci ratio: 1.889386e-02	ci left: 8.036941e-01	ci right 8.191241e-01	k: 8115	n:10000
POU1F1   10000 perm   2 sec   (5035 perm/sec)   p_kst 8.115000e-01   p_cons 5.966000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/POU1F1.5_978_10000_0.8115_0.5966_1.png
                gene_name: POU1F1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
PPARGC1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.258412e-02	ci left: 2.175373e-01	ci right 2.340227e-01	k: 2257	n:10000
Cons ci ratio: 2.025385e-02	ci left: 7.811735e-01	ci right 7.972577e-01	k: 7893	n:10000
KS ci ratio: 1.020373e-01	ci left: 1.219999e-01	ci right 1.352172e-01	k: 1285	n:10000
PPARGC1A   10000 perm   2 sec   (4746 perm/sec)   p_kst 1.285000e-01   p_cons 7.893000e-01   p_joint 2.257000e-01

Joint ci ratio: 5.524664e-02	ci left: 1.955143e-01	ci right 2.066728e-01	k: 4021	n:20000
Cons ci ratio: 1.429133e-02	ci left: 7.842881e-01	ci right 7.956274e-01	k: 15800	n:20000
KS ci ratio: 7.112476e-02	ci left: 1.271406e-01	ci right 1.365667e-01	k: 2636	n:20000
PPARGC1A   20000 perm   5 sec   (4284 perm/sec)   p_kst 1.318000e-01   p_cons 7.900000e-01   p_joint 2.010500e-01

Outputting figure to mutsig2_images.part000000000135/PPARGC1A.5_2449_20000_0.1318_0.79_0.20105.png
                gene_name: PPARGC1A
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 35 percent done.
PPFIBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.033134e-02	ci left: 4.758596e-01	ci right 4.955488e-01	k: 4857	n:10000
Cons ci ratio: 8.968229e-02	ci left: 1.531589e-01	ci right 1.676395e-01	k: 1603	n:10000
KS ci ratio: 2.006502e-02	ci left: 7.843160e-01	ci right 8.003134e-01	k: 7924	n:10000
PPFIBP2   10000 perm   2 sec   (4540 perm/sec)   p_kst 7.924000e-01   p_cons 1.603000e-01   p_joint 4.857000e-01

Outputting figure to mutsig2_images.part000000000135/PPFIBP2.5_2723_10000_0.7924_0.1603_0.4857.png
                gene_name: PPFIBP2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 38 percent done.
POM121
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.830018e-02	ci left: 1.924939e-01	ci right 2.082810e-01	k: 2003	n:10000
Cons ci ratio: 2.988391e-02	ci left: 6.228625e-01	ci right 6.418603e-01	k: 6324	n:10000
KS ci ratio: 1.058997e-01	ci left: 1.140829e-01	ci right 1.269391e-01	k: 1204	n:10000
POM121   10000 perm   2 sec   (5081 perm/sec)   p_kst 1.204000e-01   p_cons 6.324000e-01   p_joint 2.003000e-01

Joint ci ratio: 5.623726e-02	ci left: 1.899243e-01	ci right 2.009643e-01	k: 3908	n:20000
Cons ci ratio: 2.090770e-02	ci left: 6.306425e-01	ci right 6.440176e-01	k: 12747	n:20000
KS ci ratio: 7.594459e-02	ci left: 1.130680e-01	ci right 1.220435e-01	k: 2350	n:20000
POM121   20000 perm   4 sec   (4501 perm/sec)   p_kst 1.175000e-01   p_cons 6.373500e-01   p_joint 1.954000e-01

Outputting figure to mutsig2_images.part000000000135/POM121.4_3003_20000_0.1175_0.63735_0.1954.png
                gene_name: POM121
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 40 percent done.
POM121L12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.058238e-02	ci left: 4.727624e-01	ci right 4.924478e-01	k: 4826	n:10000
KS ci ratio: 2.876252e-02	ci left: 6.405589e-01	ci right 6.593536e-01	k: 6500	n:10000
POM121L12   10000 perm   2 sec   (5806 perm/sec)   p_kst 6.500000e-01   p_cons 4.826000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/POM121L12.4_895_10000_0.65_0.4826_1.png
                gene_name: POM121L12
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
POMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.011568e-02	ci left: 6.192445e-01	ci right 6.382804e-01	k: 6288	n:10000
Cons ci ratio: 2.786419e-02	ci left: 6.549475e-01	ci right 6.735567e-01	k: 6643	n:10000
KS ci ratio: 3.315575e-02	ci left: 5.731628e-01	ci right 5.925889e-01	k: 5829	n:10000
POMT1   10000 perm   2 sec   (4865 perm/sec)   p_kst 5.829000e-01   p_cons 6.643000e-01   p_joint 6.288000e-01

Outputting figure to mutsig2_images.part000000000135/POMT1.4_2320_10000_0.5829_0.6643_0.6288.png
                gene_name: POMT1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 44 percent done.
POPDC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.047793e-02	ci left: 6.136175e-01	ci right 6.327106e-01	k: 6232	n:10000
Cons ci ratio: 3.692647e-03	ci left: 9.892795e-01	ci right 9.930260e-01	k: 9913	n:10000
KS ci ratio: 5.317518e-02	ci left: 3.426336e-01	ci right 3.614527e-01	k: 3520	n:10000
POPDC3   10000 perm   2 sec   (6544 perm/sec)   p_kst 3.520000e-01   p_cons 9.913000e-01   p_joint 6.232000e-01

Outputting figure to mutsig2_images.part000000000135/POPDC3.4_888_10000_0.352_0.9913_0.6232.png
                gene_name: POPDC3
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 46 percent done.
POTEG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.792043e-02	ci left: 6.540417e-01	ci right 6.726631e-01	k: 6634	n:10000
KS ci ratio: 3.317620e-02	ci left: 5.728619e-01	ci right 5.922899e-01	k: 5826	n:10000
POTEG   10000 perm   2 sec   (5361 perm/sec)   p_kst 5.826000e-01   p_cons 6.634000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/POTEG.4_1567_10000_0.5826_0.6634_1.png
                gene_name: POTEG
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
POU2F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.710368e-02	ci left: 8.327676e-01	ci right 8.472337e-01	k: 8401	n:10000
Cons ci ratio: 3.081627e-02	ci left: 6.083937e-01	ci right 6.275375e-01	k: 6180	n:10000
KS ci ratio: 1.866511e-02	ci left: 8.074513e-01	ci right 8.227647e-01	k: 8152	n:10000
POU2F2   10000 perm   2 sec   (5078 perm/sec)   p_kst 8.152000e-01   p_cons 6.180000e-01   p_joint 8.401000e-01

Outputting figure to mutsig2_images.part000000000135/POU2F2.4_1448_10000_0.8152_0.618_0.8401.png
                gene_name: POU2F2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 50 percent done.
POU4F3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.594306e-02	ci left: 2.524128e-01	ci right 2.697266e-01	k: 2610	n:10000
Cons ci ratio: 5.342080e-02	ci left: 3.405470e-01	ci right 3.593405e-01	k: 3499	n:10000
KS ci ratio: 8.742056e-02	ci left: 1.600322e-01	ci right 1.747621e-01	k: 1673	n:10000
POU4F3   10000 perm   2 sec   (5675 perm/sec)   p_kst 1.673000e-01   p_cons 3.499000e-01   p_joint 2.610000e-01

Outputting figure to mutsig2_images.part000000000135/POU4F3.4_1025_10000_0.1673_0.3499_0.261.png
                gene_name: POU4F3
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 52 percent done.
PPEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.183513e-02	ci left: 7.547419e-01	ci right 7.715046e-01	k: 7632	n:10000
Cons ci ratio: 3.429381e-02	ci left: 5.566188e-01	ci right 5.761425e-01	k: 5664	n:10000
KS ci ratio: 3.514628e-02	ci left: 5.444935e-01	ci right 5.640749e-01	k: 5543	n:10000
PPEF1   10000 perm   2 sec   (4955 perm/sec)   p_kst 5.543000e-01   p_cons 5.664000e-01   p_joint 7.632000e-01

Outputting figure to mutsig2_images.part000000000135/PPEF1.4_2026_10000_0.5543_0.5664_0.7632.png
                gene_name: PPEF1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 54 percent done.
POT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.881357e-02	ci left: 8.050140e-01	ci right 8.204033e-01	k: 8128	n:10000
Cons ci ratio: 5.100929e-02	ci left: 3.617196e-01	ci right 3.807555e-01	k: 3712	n:10000
KS ci ratio: 4.567292e-03	ci left: 9.842574e-01	ci right 9.888526e-01	k: 9867	n:10000
POT1   10000 perm   2 sec   (6089 perm/sec)   p_kst 9.867000e-01   p_cons 3.712000e-01   p_joint 8.128000e-01

Outputting figure to mutsig2_images.part000000000135/POT1.3_1965_10000_0.9867_0.3712_0.8128.png
                gene_name: POT1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 56 percent done.
POTEA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.313860e-02	ci left: 7.329006e-01	ci right 7.501585e-01	k: 7416	n:10000
Cons ci ratio: 4.232859e-02	ci left: 4.517915e-01	ci right 4.714309e-01	k: 4616	n:10000
KS ci ratio: 2.693242e-02	ci left: 6.700507e-01	ci right 6.884448e-01	k: 6793	n:10000
POTEA   10000 perm   2 sec   (5959 perm/sec)   p_kst 6.793000e-01   p_cons 4.616000e-01   p_joint 7.416000e-01

Outputting figure to mutsig2_images.part000000000135/POTEA.3_1545_10000_0.6793_0.4616_0.7416.png
                gene_name: POTEA
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 58 percent done.
POTEF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.536123e-03	ci left: 9.395202e-01	ci right 9.486189e-01	k: 9442	n:10000
Cons ci ratio: 1.538916e-02	ci left: 8.596771e-01	ci right 8.731087e-01	k: 8665	n:10000
KS ci ratio: 3.553197e-02	ci left: 5.390841e-01	ci right 5.586874e-01	k: 5489	n:10000
POTEF   10000 perm   2 sec   (4753 perm/sec)   p_kst 5.489000e-01   p_cons 8.665000e-01   p_joint 9.442000e-01

Outputting figure to mutsig2_images.part000000000135/POTEF.3_3288_10000_0.5489_0.8665_0.9442.png
                gene_name: POTEF
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 60 percent done.
POU2F3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.998038e-02	ci left: 6.213549e-01	ci right 6.403688e-01	k: 6309	n:10000
Cons ci ratio: 5.195093e-02	ci left: 3.532680e-01	ci right 3.722120e-01	k: 3627	n:10000
KS ci ratio: 2.213094e-02	ci left: 7.497846e-01	ci right 7.666647e-01	k: 7583	n:10000
POU2F3   10000 perm   2 sec   (5611 perm/sec)   p_kst 7.583000e-01   p_cons 3.627000e-01   p_joint 6.309000e-01

Outputting figure to mutsig2_images.part000000000135/POU2F3.3_1363_10000_0.7583_0.3627_0.6309.png
                gene_name: POU2F3
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 62 percent done.
POU6F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.473999e-02	ci left: 4.244558e-01	ci right 4.439826e-01	k: 4342	n:10000
Cons ci ratio: 1.299056e-02	ci left: 8.950816e-01	ci right 9.068836e-01	k: 9011	n:10000
KS ci ratio: 1.202867e-01	ci left: 9.019709e-02	ci right 1.018395e-01	k: 959	n:10000
POU6F2   10000 perm   2 sec   (5048 perm/sec)   p_kst 9.590000e-02   p_cons 9.011000e-01   p_joint 4.342000e-01

Joint ci ratio: 4.122831e-02	ci left: 3.048360e-01	ci right 3.177189e-01	k: 6225	n:20000
Cons ci ratio: 9.246019e-03	ci left: 8.956571e-01	ci right 9.040262e-01	k: 17998	n:20000
KS ci ratio: 8.550126e-02	ci left: 9.101944e-02	ci right 9.919871e-02	k: 1901	n:20000
POU6F2   20000 perm   4 sec   (4684 perm/sec)   p_kst 9.505000e-02   p_cons 8.999000e-01   p_joint 3.112500e-01

Outputting figure to mutsig2_images.part000000000135/POU6F2.3_2116_20000_0.09505_0.8999_0.31125.png
                gene_name: POU6F2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 65 percent done.
PPA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.446874e-02	ci left: 7.106829e-01	ci right 7.283891e-01	k: 7196	n:10000
KS ci ratio: 3.761157e-02	ci left: 5.107537e-01	ci right 5.304343e-01	k: 5206	n:10000
PPA2   10000 perm   1 sec   (6699 perm/sec)   p_kst 5.206000e-01   p_cons 7.196000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/PPA2.3_1053_10000_0.5206_0.7196_1.png
                gene_name: PPA2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
PPID
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.817290e-02	ci left: 5.033509e-01	ci right 5.230414e-01	k: 5132	n:10000
Cons ci ratio: 2.123069e-02	ci left: 7.648635e-01	ci right 7.813771e-01	k: 7732	n:10000
KS ci ratio: 5.908968e-02	ci left: 2.964797e-01	ci right 3.146337e-01	k: 3055	n:10000
PPID   10000 perm   2 sec   (5168 perm/sec)   p_kst 3.055000e-01   p_cons 7.732000e-01   p_joint 5.132000e-01

Outputting figure to mutsig2_images.part000000000135/PPID.3_1153_10000_0.3055_0.7732_0.5132.png
                gene_name: PPID
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 69 percent done.
POMC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.343912e-02	ci left: 1.732025e-01	ci right 1.883840e-01	k: 1807	n:10000
Cons ci ratio: 9.187494e-02	ci left: 1.468790e-01	ci right 1.611232e-01	k: 1539	n:10000
KS ci ratio: 2.236599e-01	ci left: 2.646035e-02	ci right 3.321723e-02	k: 297	n:10000
POMC   10000 perm   2 sec   (6164 perm/sec)   p_kst 2.970000e-02   p_cons 1.539000e-01   p_joint 1.807000e-01

Joint ci ratio: 6.867025e-02	ci left: 1.352679e-01	ci right 1.449369e-01	k: 2801	n:20000
Cons ci ratio: 6.424070e-02	ci left: 1.518845e-01	ci right 1.620154e-01	k: 3138	n:20000
KS ci ratio: 1.573407e-01	ci left: 2.772743e-02	ci right 3.251047e-02	k: 601	n:20000
POMC   20000 perm   4 sec   (5430 perm/sec)   p_kst 3.005000e-02   p_cons 1.569000e-01   p_joint 1.400500e-01

Joint ci ratio: 5.857339e-02	ci left: 1.260821e-01	ci right 1.337231e-01	k: 3896	n:30000
Cons ci ratio: 5.486810e-02	ci left: 1.413960e-01	ci right 1.494062e-01	k: 4361	n:30000
KS ci ratio: 1.269551e-01	ci left: 2.884147e-02	ci right 3.278342e-02	k: 923	n:30000
POMC   30000 perm   6 sec   (5174 perm/sec)   p_kst 3.076667e-02   p_cons 1.453667e-01   p_joint 1.298667e-01

Joint ci ratio: 6.163907e-02	ci left: 8.898757e-02	ci right 9.467185e-02	k: 3672	n:40000
Cons ci ratio: 4.760353e-02	ci left: 1.414886e-01	ci right 1.484131e-01	k: 5797	n:40000
KS ci ratio: 1.107845e-01	ci left: 2.866619e-02	ci right 3.205244e-02	k: 1213	n:40000
POMC   40000 perm   8 sec   (5014 perm/sec)   p_kst 3.032500e-02   p_cons 1.449250e-01   p_joint 9.180000e-02

Joint ci ratio: 3.493043e-02	ci left: 1.976736e-01	ci right 2.047211e-01	k: 10059	n:50000
Cons ci ratio: 4.240873e-02	ci left: 1.428363e-01	ci right 1.490449e-01	k: 7296	n:50000
KS ci ratio: 9.900486e-02	ci left: 2.889293e-02	ci right 3.192191e-02	k: 1519	n:50000
POMC   50000 perm   10 sec   (4886 perm/sec)   p_kst 3.038000e-02   p_cons 1.459200e-01   p_joint 2.011800e-01

Outputting figure to mutsig2_images.part000000000135/POMC.2_812_50000_0.03038_0.14592_0.20118.png
                gene_name: POMC
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.20 

Current progress: 71 percent done.
POMGNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.959375e-02	ci left: 1.873727e-01	ci right 2.030052e-01	k: 1951	n:10000
Cons ci ratio: 5.723519e-02	ci left: 3.100670e-01	ci right 3.284384e-01	k: 3192	n:10000
KS ci ratio: 1.547402e-01	ci left: 5.561671e-02	ci right 6.504144e-02	k: 602	n:10000
POMGNT1   10000 perm   2 sec   (6060 perm/sec)   p_kst 6.020000e-02   p_cons 3.192000e-01   p_joint 1.951000e-01

Joint ci ratio: 7.129614e-02	ci left: 1.265990e-01	ci right 1.360085e-01	k: 2625	n:20000
Cons ci ratio: 4.044354e-02	ci left: 3.130891e-01	ci right 3.260634e-01	k: 6391	n:20000
KS ci ratio: 1.104472e-01	ci left: 5.596855e-02	ci right 6.256031e-02	k: 1184	n:20000
POMGNT1   20000 perm   4 sec   (5242 perm/sec)   p_kst 5.920000e-02   p_cons 3.195500e-01   p_joint 1.312500e-01

Joint ci ratio: 4.171223e-02	ci left: 2.226668e-01	ci right 2.321860e-01	k: 6822	n:30000
Cons ci ratio: 3.299168e-02	ci left: 3.146892e-01	ci right 3.252790e-01	k: 9599	n:30000
KS ci ratio: 8.971188e-02	ci left: 5.714289e-02	ci right 6.254274e-02	k: 1794	n:30000
POMGNT1   30000 perm   6 sec   (4986 perm/sec)   p_kst 5.980000e-02   p_cons 3.199667e-01   p_joint 2.274000e-01

Outputting figure to mutsig2_images.part000000000135/POMGNT1.2_2067_30000_0.0598_0.31997_0.2274.png
                gene_name: POMGNT1
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 73 percent done.
PON2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.941687e-02	ci left: 1.880620e-01	ci right 2.037156e-01	k: 1958	n:10000
Cons ci ratio: 8.075213e-02	ci left: 1.829427e-01	ci right 1.984379e-01	k: 1906	n:10000
KS ci ratio: 5.897850e-02	ci left: 2.972729e-01	ci right 3.154400e-01	k: 3063	n:10000
PON2   10000 perm   2 sec   (6233 perm/sec)   p_kst 3.063000e-01   p_cons 1.906000e-01   p_joint 1.958000e-01

Outputting figure to mutsig2_images.part000000000135/PON2.2_1101_10000_0.3063_0.1906_0.1958.png
                gene_name: PON2
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 75 percent done.
PON3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.733862e-02	ci left: 2.445023e-01	ci right 2.616417e-01	k: 2530	n:10000
Cons ci ratio: 5.118453e-02	ci left: 3.601284e-01	ci right 3.791476e-01	k: 3696	n:10000
KS ci ratio: 1.363864e-01	ci left: 7.107385e-02	ci right 8.157455e-02	k: 762	n:10000
PON3   10000 perm   1 sec   (6675 perm/sec)   p_kst 7.620000e-02   p_cons 3.696000e-01   p_joint 2.530000e-01

Joint ci ratio: 3.999226e-02	ci left: 3.179625e-01	ci right 3.309885e-01	k: 6489	n:20000
Cons ci ratio: 3.592252e-02	ci left: 3.664410e-01	ci right 3.798959e-01	k: 7463	n:20000
KS ci ratio: 9.769493e-02	ci left: 7.084903e-02	ci right 7.817525e-02	k: 1489	n:20000
PON3   20000 perm   4 sec   (5692 perm/sec)   p_kst 7.445000e-02   p_cons 3.731500e-01   p_joint 3.244500e-01

Outputting figure to mutsig2_images.part000000000135/PON3.2_1101_20000_0.07445_0.37315_0.32445.png
                gene_name: PON3
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 77 percent done.
POP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.064764e-02	ci left: 1.833364e-01	ci right 1.988440e-01	k: 1910	n:10000
Cons ci ratio: 1.125939e-01	ci left: 1.019814e-01	ci right 1.142479e-01	k: 1080	n:10000
KS ci ratio: 6.898055e-02	ci left: 2.356076e-01	ci right 2.525417e-01	k: 2440	n:10000
POP5   10000 perm   2 sec   (6272 perm/sec)   p_kst 2.440000e-01   p_cons 1.080000e-01   p_joint 1.910000e-01

Joint ci ratio: 6.771760e-02	ci left: 1.386191e-01	ci right 1.483848e-01	k: 2869	n:20000
Cons ci ratio: 8.197512e-02	ci left: 9.837857e-02	ci right 1.068374e-01	k: 2051	n:20000
KS ci ratio: 4.896946e-02	ci left: 2.366720e-01	ci right 2.486029e-01	k: 4852	n:20000
POP5   20000 perm   4 sec   (5627 perm/sec)   p_kst 2.426000e-01   p_cons 1.025500e-01   p_joint 1.434500e-01

Outputting figure to mutsig2_images.part000000000135/POP5.2_512_20000_0.2426_0.10255_0.14345.png
                gene_name: POP5
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 79 percent done.
PORCN
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 81 percent done.
POU4F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.288008e-02	ci left: 1.751695e-01	ci right 1.904157e-01	k: 1827	n:10000
Cons ci ratio: 1.502814e-01	ci left: 5.889456e-02	ci right 6.856151e-02	k: 636	n:10000
KS ci ratio: 9.850717e-02	ci left: 1.299255e-01	ci right 1.434869e-01	k: 1366	n:10000
POU4F1   10000 perm   2 sec   (6189 perm/sec)   p_kst 1.366000e-01   p_cons 6.360000e-02   p_joint 1.827000e-01

Joint ci ratio: 5.052384e-02	ci left: 2.254705e-01	ci right 2.372077e-01	k: 4626	n:20000
Cons ci ratio: 1.074889e-01	ci left: 5.898909e-02	ci right 6.573884e-02	k: 1246	n:20000
KS ci ratio: 6.864177e-02	ci left: 1.353665e-01	ci right 1.450384e-01	k: 2803	n:20000
POU4F1   20000 perm   4 sec   (5331 perm/sec)   p_kst 1.401500e-01   p_cons 6.230000e-02   p_joint 2.313000e-01

Joint ci ratio: 4.023349e-02	ci left: 2.355069e-01	ci right 2.452101e-01	k: 7210	n:30000
Cons ci ratio: 8.733012e-02	ci left: 6.017846e-02	ci right 6.570655e-02	k: 1887	n:30000
KS ci ratio: 5.591473e-02	ci left: 1.368165e-01	ci right 1.447198e-01	k: 4222	n:30000
POU4F1   30000 perm   6 sec   (4904 perm/sec)   p_kst 1.407333e-01   p_cons 6.290000e-02   p_joint 2.403333e-01

Outputting figure to mutsig2_images.part000000000135/POU4F1.2_1268_30000_0.14073_0.0629_0.24033.png
                gene_name: POU4F1
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 83 percent done.
POU5F2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.982620e-02	ci left: 4.821550e-01	ci right 5.018497e-01	k: 4920	n:10000
Cons ci ratio: 9.627528e-02	ci left: 1.353117e-01	ci right 1.490975e-01	k: 1421	n:10000
KS ci ratio: 2.191363e-02	ci left: 7.534265e-01	ci right 7.702207e-01	k: 7619	n:10000
POU5F2   10000 perm   2 sec   (5879 perm/sec)   p_kst 7.619000e-01   p_cons 1.421000e-01   p_joint 4.920000e-01

Outputting figure to mutsig2_images.part000000000135/POU5F2.2_991_10000_0.7619_0.1421_0.492.png
                gene_name: POU5F2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 85 percent done.
POU6F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.658696e-02	ci left: 6.756920e-01	ci right 6.940002e-01	k: 6849	n:10000
KS ci ratio: 2.604030e-02	ci left: 6.846608e-01	ci right 7.028262e-01	k: 6938	n:10000
POU6F1   10000 perm   2 sec   (6101 perm/sec)   p_kst 6.938000e-01   p_cons 6.849000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000135/POU6F1.2_926_10000_0.6938_0.6849_1.png
                gene_name: POU6F1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
PPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.506850e-02	ci left: 8.645785e-01	ci right 8.778045e-01	k: 8713	n:10000
Cons ci ratio: 5.710380e-02	ci left: 3.110592e-01	ci right 3.294457e-01	k: 3202	n:10000
KS ci ratio: 4.386771e-02	ci left: 4.341296e-01	ci right 4.537031e-01	k: 4439	n:10000
PPA1   10000 perm   2 sec   (6403 perm/sec)   p_kst 4.439000e-01   p_cons 3.202000e-01   p_joint 8.713000e-01

Outputting figure to mutsig2_images.part000000000135/PPA1.2_914_10000_0.4439_0.3202_0.8713.png
                gene_name: PPA1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 90 percent done.
PPAPDC1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.535246e-01	ci left: 5.648398e-02	ci right 6.597362e-02	k: 611	n:10000
Cons ci ratio: 1.583164e-02	ci left: 8.528403e-01	ci right 8.665494e-01	k: 8598	n:10000
KS ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
PPAPDC1A   10000 perm   2 sec   (6035 perm/sec)   p_kst 4.320000e-02   p_cons 8.598000e-01   p_joint 6.110000e-02

Joint ci ratio: 1.099548e-01	ci left: 5.645556e-02	ci right 6.307314e-02	k: 1194	n:20000
Cons ci ratio: 1.133962e-02	ci left: 8.517166e-01	ci right 8.614795e-01	k: 17133	n:20000
KS ci ratio: 1.324614e-01	ci left: 3.916497e-02	ci right 4.476918e-02	k: 838	n:20000
PPAPDC1A   20000 perm   4 sec   (5439 perm/sec)   p_kst 4.190000e-02   p_cons 8.566500e-01   p_joint 5.970000e-02

Joint ci ratio: 6.334461e-02	ci left: 1.096028e-01	ci right 1.168057e-01	k: 3395	n:30000
Cons ci ratio: 9.288052e-03	ci left: 8.518411e-01	ci right 8.598231e-01	k: 25676	n:30000
KS ci ratio: 1.063807e-01	ci left: 4.099204e-02	ci right 4.563026e-02	k: 1298	n:30000
PPAPDC1A   30000 perm   6 sec   (5221 perm/sec)   p_kst 4.326667e-02   p_cons 8.558667e-01   p_joint 1.131667e-01

Joint ci ratio: 5.505033e-02	ci left: 1.093945e-01	ci right 1.156119e-01	k: 4499	n:40000
Cons ci ratio: 8.074268e-03	ci left: 8.514355e-01	ci right 8.583629e-01	k: 34197	n:40000
KS ci ratio: 9.218437e-02	ci left: 4.125280e-02	ci right 4.526385e-02	k: 1729	n:40000
PPAPDC1A   40000 perm   8 sec   (5057 perm/sec)   p_kst 4.322500e-02   p_cons 8.549250e-01   p_joint 1.124750e-01

Outputting figure to mutsig2_images.part000000000135/PPAPDC1A.2_844_40000_0.043225_0.85493_0.11248.png
                gene_name: PPAPDC1A
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 92 percent done.
PPAPDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.496836e-02	ci left: 2.065875e-01	ci right 2.227791e-01	k: 2146	n:10000
Cons ci ratio: 1.304623e-01	ci left: 7.737381e-02	ci right 8.827067e-02	k: 827	n:10000
KS ci ratio: 4.118018e-02	ci left: 4.654705e-01	ci right 4.851439e-01	k: 4753	n:10000
PPAPDC2   10000 perm   2 sec   (6262 perm/sec)   p_kst 4.753000e-01   p_cons 8.270000e-02   p_joint 2.146000e-01

Joint ci ratio: 5.997526e-02	ci left: 1.706952e-01	ci right 1.812992e-01	k: 3519	n:20000
Cons ci ratio: 9.129435e-02	ci left: 8.053403e-02	ci right 8.828730e-02	k: 1687	n:20000
KS ci ratio: 2.903078e-02	ci left: 4.699067e-01	ci right 4.838000e-01	k: 9537	n:20000
PPAPDC2   20000 perm   4 sec   (5433 perm/sec)   p_kst 4.768500e-01   p_cons 8.435000e-02   p_joint 1.759500e-01

Outputting figure to mutsig2_images.part000000000135/PPAPDC2.2_892_20000_0.47685_0.08435_0.17595.png
                gene_name: PPAPDC2
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 94 percent done.
PPARD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.275020e-02	ci left: 2.718089e-01	ci right 2.895190e-01	k: 2806	n:10000
Cons ci ratio: 1.694434e-02	ci left: 8.353127e-01	ci right 8.496872e-01	k: 8426	n:10000
KS ci ratio: 1.164983e-01	ci left: 9.574517e-02	ci right 1.076880e-01	k: 1016	n:10000
PPARD   10000 perm   2 sec   (6237 perm/sec)   p_kst 1.016000e-01   p_cons 8.426000e-01   p_joint 2.806000e-01

Joint ci ratio: 6.319319e-02	ci left: 1.562270e-01	ci right 1.664716e-01	k: 3226	n:20000
Cons ci ratio: 1.192884e-02	ci left: 8.386430e-01	ci right 8.487569e-01	k: 16875	n:20000
KS ci ratio: 8.107548e-02	ci left: 1.003913e-01	ci right 1.089240e-01	k: 2092	n:20000
PPARD   20000 perm   4 sec   (5392 perm/sec)   p_kst 1.046000e-01   p_cons 8.437500e-01   p_joint 1.613000e-01

Outputting figure to mutsig2_images.part000000000135/PPARD.2_1375_20000_0.1046_0.84375_0.1613.png
                gene_name: PPARD
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 96 percent done.
PPCS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.389257e-02	ci left: 1.716291e-01	ci right 1.867583e-01	k: 1791	n:10000
Cons ci ratio: 1.851014e-02	ci left: 8.099906e-01	ci right 8.252239e-01	k: 8177	n:10000
KS ci ratio: 1.430962e-01	ci left: 6.478500e-02	ci right 7.486734e-02	k: 697	n:10000
PPCS   10000 perm   1 sec   (6711 perm/sec)   p_kst 6.970000e-02   p_cons 8.177000e-01   p_joint 1.791000e-01

Joint ci ratio: 6.297228e-02	ci left: 1.571648e-01	ci right 1.674336e-01	k: 3245	n:20000
Cons ci ratio: 1.302675e-02	ci left: 8.136939e-01	ci right 8.244132e-01	k: 16382	n:20000
KS ci ratio: 1.009534e-01	ci left: 6.655043e-02	ci right 7.367517e-02	k: 1401	n:20000
PPCS   20000 perm   3 sec   (5733 perm/sec)   p_kst 7.005000e-02   p_cons 8.191000e-01   p_joint 1.622500e-01

Joint ci ratio: 4.852430e-02	ci left: 1.743135e-01	ci right 1.830155e-01	k: 5359	n:30000
Cons ci ratio: 1.054037e-02	ci left: 8.173882e-01	ci right 8.260827e-01	k: 24653	n:30000
KS ci ratio: 8.311070e-02	ci left: 6.615712e-02	ci right 7.192668e-02	k: 2070	n:30000
PPCS   30000 perm   6 sec   (5275 perm/sec)   p_kst 6.900000e-02   p_cons 8.217667e-01   p_joint 1.786333e-01

Outputting figure to mutsig2_images.part000000000135/PPCS.2_948_30000_0.069_0.82177_0.17863.png
                gene_name: PPCS
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 98 percent done.
PPHLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.406084e-02	ci left: 3.351826e-01	ci right 3.539081e-01	k: 3445	n:10000
Cons ci ratio: 8.869635e-02	ci left: 1.561040e-01	ci right 1.706926e-01	k: 1633	n:10000
KS ci ratio: 4.551311e-02	ci left: 4.160815e-01	ci right 4.355618e-01	k: 4258	n:10000
PPHLN1   10000 perm   2 sec   (6010 perm/sec)   p_kst 4.258000e-01   p_cons 1.633000e-01   p_joint 3.445000e-01

Outputting figure to mutsig2_images.part000000000135/PPHLN1.2_1635_10000_0.4258_0.1633_0.3445.png
                gene_name: PPHLN1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000135
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 135 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1728>
Subject: Job 9894086: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1728>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000136> was used as the working directory.
Started at Sat Oct  6 00:25:27 2012
Results reported at Sat Oct  6 03:32:25 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000136.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000136.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 136  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000136.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11308.93 sec.
    Max Memory :      6445 MB
    Max Swap   :      8929 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
136
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 136
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 136: processing genes 12171 - 12260
Calculating significance of each gene.
Using projection method.
12171	PPIL4	8.315965e-01
12172	PPIL5	6.831647e-01
12173	PPIL6	4.462943e-01
12174	PPIP5K1	8.924630e-01
12175	PPIP5K2	5.747992e-01
12176	PPL	9.009780e-01
12177	PPM1A	8.078325e-02
12178	PPM1B	3.840039e-01
12179	PPM1D	1.641928e-01
12180	PPM1E	5.456304e-01
In gene PPM1F the following bins exceed PROBCAP:
    COAD-AA-3552	categ 6	N = 1210    n = 1	mu =   1.38e-07
12181	PPM1F	6.223401e-01
12182	PPM1G	7.952939e-01
12183	PPM1H	3.338577e-01
12184	PPM1J	1
12185	PPM1K	3.000536e-01
12186	PPM1L	9.890451e-02
12187	PPM1M	1
12188	PPM1N	6.869607e-02
12189	PPME1	7.651549e-01
12190	PPOX	2.562095e-01
12191	PPP1CA	1
12192	PPP1CB	1.560311e-01
12193	PPP1CC	5.673705e-01
12194	PPP1R10	9.517333e-01
12195	PPP1R11	1
12196	PPP1R12A	6.815964e-01
12197	PPP1R12B	6.658792e-02
12198	PPP1R12C	7.746697e-01
12199	PPP1R13B	7.200952e-01
12200	PPP1R13L	9.960773e-01
12201	PPP1R14A	1
12202	PPP1R14B	1
12203	PPP1R14C	4.070678e-01
12204	PPP1R14D	1.926931e-01
12205	PPP1R15A	2.553315e-01
12206	PPP1R15B	8.738440e-01
12207	PPP1R16A	1
12208	PPP1R16B	5.563755e-01
12209	PPP1R1A	1
12210	PPP1R1B	4.227186e-01
12211	PPP1R1C	7.831447e-02
12212	PPP1R2	7.494759e-01
12213	PPP1R3A	2.955698e-03
12214	PPP1R3B	7.282393e-01
12215	PPP1R3C	1.031576e-01
12216	PPP1R3D	7.452544e-01
12217	PPP1R3F	2.727286e-01
12218	PPP1R7	7.288954e-01
12219	PPP1R8	1
12220	PPP1R9A	1.601516e-01
12221	PPP1R9B	1
12222	PPP2CA	6.420174e-01
12223	PPP2CB	8.341236e-01
12224	PPP2R1A	2.468968e-01
12225	PPP2R1B	8.839476e-01
12226	PPP2R2A	7.734793e-01
12227	PPP2R2B	3.132932e-01
12228	PPP2R2C	1.862477e-01
12229	PPP2R2D	7.385992e-01
12230	PPP2R3A	3.430005e-01
12231	PPP2R3C	2.679539e-01
12232	PPP2R4	1
12233	PPP2R5A	6.296566e-01
12234	PPP2R5B	4.309302e-01
12235	PPP2R5C	6.524336e-01
12236	PPP2R5D	1
12237	PPP2R5E	4.927783e-01
12238	PPP3CA	3.884079e-01
12239	PPP3CB	7.314275e-02
12240	PPP3CC	1.892804e-01
12241	PPP3R1	4.670668e-01
12242	PPP3R2	6.551101e-01
12243	PPP4C	1
12244	PPP4R1	7.675453e-01
12245	PPP4R2	7.656005e-01
12246	PPP4R4	1.044075e-01
12247	PPP5C	7.604269e-01
12248	PPP6C	3.169403e-01
12249	PPPDE1	5.916703e-01
12250	PPPDE2	3.417422e-01
12251	PPRC1	7.104552e-01
12252	PPT1	1
12253	PPT2	3.168236e-01
12254	PPTC7	7.626112e-01
12255	PPWD1	4.234793e-01
12256	PPY	1
12257	PPYR1	2.817720e-01
12258	PQBP1	7.296279e-01
12259	PQLC1	1
12260	PQLC2	3.602405e-01
Done

Running MutSig 2:
Scatter job 136: processing genes 12171 - 12260
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PPP1R3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.146189e-02	ci left: 4.620751e-01	ci right 4.817413e-01	k: 4719	n:10000
Cons ci ratio: 4.908768e-02	ci left: 3.797268e-01	ci right 3.989377e-01	k: 3893	n:10000
KS ci ratio: 5.296607e-02	ci left: 3.444222e-01	ci right 3.632630e-01	k: 3538	n:10000
PPP1R3A   10000 perm   2 sec   (5440 perm/sec)   p_kst 3.538000e-01   p_cons 3.893000e-01   p_joint 4.719000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R3A.13_3385_10000_0.3538_0.3893_0.4719.png
                gene_name: PPP1R3A
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 2 percent done.
PPP4R4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.687240e-02	ci left: 5.206607e-01	ci right 5.403215e-01	k: 5305	n:10000
Cons ci ratio: 4.015418e-02	ci left: 4.780578e-01	ci right 4.977493e-01	k: 4879	n:10000
KS ci ratio: 4.587792e-02	ci left: 4.121944e-01	ci right 4.316511e-01	k: 4219	n:10000
PPP4R4   10000 perm   2 sec   (5248 perm/sec)   p_kst 4.219000e-01   p_cons 4.879000e-01   p_joint 5.305000e-01

Outputting figure to mutsig2_images.part000000000136/PPP4R4.13_2795_10000_0.4219_0.4879_0.5305.png
                gene_name: PPP4R4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 4 percent done.
PPP1R12B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.932931e-01	ci left: 3.567168e-02	ci right 4.339951e-02	k: 394	n:10000
Cons ci ratio: 1.796799e-02	ci left: 8.188316e-01	ci right 8.337778e-01	k: 8264	n:10000
KS ci ratio: 2.878995e-01	ci left: 1.557819e-02	ci right 2.090773e-02	k: 181	n:10000
PPP1R12B   10000 perm   2 sec   (5333 perm/sec)   p_kst 1.810000e-02   p_cons 8.264000e-01   p_joint 3.940000e-02

Joint ci ratio: 1.109456e-01	ci left: 5.548160e-02	ci right 6.204742e-02	k: 1174	n:20000
Cons ci ratio: 1.274462e-02	ci left: 8.201678e-01	ci right 8.307374e-01	k: 16510	n:20000
KS ci ratio: 2.058973e-01	ci left: 1.596539e-02	ci right 1.967668e-02	k: 355	n:20000
PPP1R12B   20000 perm   4 sec   (4829 perm/sec)   p_kst 1.775000e-02   p_cons 8.255000e-01   p_joint 5.870000e-02

Joint ci ratio: 9.016690e-02	ci left: 5.658822e-02	ci right 6.196420e-02	k: 1777	n:30000
Cons ci ratio: 1.045031e-02	ci left: 8.199119e-01	ci right 8.285585e-01	k: 24728	n:30000
KS ci ratio: 1.699062e-01	ci left: 1.595059e-02	ci right 1.894391e-02	k: 522	n:30000
PPP1R12B   30000 perm   6 sec   (4640 perm/sec)   p_kst 1.740000e-02   p_cons 8.242667e-01   p_joint 5.923333e-02

Joint ci ratio: 8.935971e-02	ci left: 4.384527e-02	ci right 4.797098e-02	k: 1835	n:40000
Cons ci ratio: 9.046017e-03	ci left: 8.206354e-01	ci right 8.281175e-01	k: 32976	n:40000
KS ci ratio: 1.459064e-01	ci left: 1.643041e-02	ci right 1.904027e-02	k: 708	n:40000
PPP1R12B   40000 perm   9 sec   (4487 perm/sec)   p_kst 1.770000e-02   p_cons 8.244000e-01   p_joint 4.587500e-02

Joint ci ratio: 8.767859e-02	ci left: 3.675210e-02	ci right 4.014176e-02	k: 1921	n:50000
Cons ci ratio: 8.068051e-03	ci left: 8.218623e-01	ci right 8.285399e-01	k: 41261	n:50000
KS ci ratio: 1.262375e-01	ci left: 1.772442e-02	ci right 2.013190e-02	k: 945	n:50000
PPP1R12B   50000 perm   11 sec   (4389 perm/sec)   p_kst 1.890000e-02   p_cons 8.252200e-01   p_joint 3.842000e-02

Joint ci ratio: 7.401042e-02	ci left: 4.301114e-02	ci right 4.633309e-02	k: 2679	n:60000
Cons ci ratio: 7.394072e-03	ci left: 8.210128e-01	ci right 8.271225e-01	k: 49445	n:60000
KS ci ratio: 1.146330e-01	ci left: 1.801975e-02	ci right 2.022711e-02	k: 1146	n:60000
PPP1R12B   60000 perm   14 sec   (4296 perm/sec)   p_kst 1.910000e-02   p_cons 8.240833e-01   p_joint 4.465000e-02

Joint ci ratio: 6.750589e-02	ci left: 4.440362e-02	ci right 4.751987e-02	k: 3216	n:70000
Cons ci ratio: 6.841465e-03	ci left: 8.214171e-01	ci right 8.270703e-01	k: 57698	n:70000
KS ci ratio: 1.065021e-01	ci left: 1.797364e-02	ci right 2.000937e-02	k: 1328	n:70000
PPP1R12B   70000 perm   17 sec   (4207 perm/sec)   p_kst 1.897143e-02   p_cons 8.242571e-01   p_joint 4.594286e-02

Joint ci ratio: 6.578298e-02	ci left: 4.110019e-02	ci right 4.390811e-02	k: 3399	n:80000
Cons ci ratio: 6.406931e-03	ci left: 8.212677e-01	ci right 8.265588e-01	k: 65914	n:80000
KS ci ratio: 1.005679e-01	ci left: 1.769939e-02	ci right 1.958575e-02	k: 1490	n:80000
PPP1R12B   80000 perm   19 sec   (4136 perm/sec)   p_kst 1.862500e-02   p_cons 8.239250e-01   p_joint 4.248750e-02

Joint ci ratio: 6.457562e-02	ci left: 3.806173e-02	ci right 4.061251e-02	k: 3539	n:90000
Cons ci ratio: 6.030616e-03	ci left: 8.218982e-01	ci right 8.268808e-01	k: 74196	n:90000
KS ci ratio: 9.514565e-02	ci left: 1.762963e-02	ci right 1.940159e-02	k: 1665	n:90000
PPP1R12B   90000 perm   22 sec   (4069 perm/sec)   p_kst 1.850000e-02   p_cons 8.244000e-01   p_joint 3.932222e-02

Outputting figure to mutsig2_images.part000000000136/PPP1R12B.9_3274_90000_0.0185_0.8244_0.039322.png
                gene_name: PPP1R12B
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.041 

Current progress: 6 percent done.
PPP1R9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.410433e-01	ci left: 6.662205e-02	ci right 7.682914e-02	k: 716	n:10000
Cons ci ratio: 1.675368e-01	ci left: 4.753733e-02	ci right 5.632602e-02	k: 518	n:10000
KS ci ratio: 7.881696e-02	ci left: 1.904255e-01	ci right 2.061507e-01	k: 1982	n:10000
PPP1R9A   10000 perm   2 sec   (5223 perm/sec)   p_kst 1.982000e-01   p_cons 5.180000e-02   p_joint 7.160000e-02

Joint ci ratio: 8.385469e-02	ci left: 9.435467e-02	ci right 1.026625e-01	k: 1969	n:20000
Cons ci ratio: 1.220452e-01	ci left: 4.604902e-02	ci right 5.208294e-02	k: 980	n:20000
KS ci ratio: 5.567144e-02	ci left: 1.930901e-01	ci right 2.041976e-01	k: 3972	n:20000
PPP1R9A   20000 perm   4 sec   (4738 perm/sec)   p_kst 1.986000e-01   p_cons 4.900000e-02   p_joint 9.845000e-02

Joint ci ratio: 8.296020e-02	ci left: 6.638595e-02	ci right 7.216447e-02	k: 2077	n:30000
Cons ci ratio: 9.892770e-02	ci left: 4.726782e-02	ci right 5.221984e-02	k: 1491	n:30000
KS ci ratio: 4.424301e-02	ci left: 2.027908e-01	ci right 2.119992e-01	k: 6221	n:30000
PPP1R9A   30000 perm   7 sec   (4544 perm/sec)   p_kst 2.073667e-01   p_cons 4.970000e-02   p_joint 6.923333e-02

Outputting figure to mutsig2_images.part000000000136/PPP1R9A.8_4229_30000_0.20737_0.0497_0.069233.png
                gene_name: PPP1R9A
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.072 

Current progress: 7 percent done.
PPM1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.042473e-02	ci left: 2.871625e-01	ci right 3.051564e-01	k: 2961	n:10000
Cons ci ratio: 1.430962e-01	ci left: 6.478500e-02	ci right 7.486734e-02	k: 697	n:10000
KS ci ratio: 3.569007e-02	ci left: 5.368806e-01	ci right 5.564922e-01	k: 5467	n:10000
PPM1A   10000 perm   2 sec   (6499 perm/sec)   p_kst 5.467000e-01   p_cons 6.970000e-02   p_joint 2.961000e-01

Joint ci ratio: 4.311436e-02	ci left: 2.861015e-01	ci right 2.987588e-01	k: 5848	n:20000
Cons ci ratio: 1.031050e-01	ci left: 6.391463e-02	ci right 7.091178e-02	k: 1347	n:20000
KS ci ratio: 2.551196e-02	ci left: 5.344136e-01	ci right 5.482743e-01	k: 10827	n:20000
PPM1A   20000 perm   3 sec   (5954 perm/sec)   p_kst 5.413500e-01   p_cons 6.735000e-02   p_joint 2.924000e-01

Joint ci ratio: 3.787302e-02	ci left: 2.581239e-01	ci right 2.681220e-01	k: 7893	n:30000
Cons ci ratio: 8.374221e-02	ci left: 6.520923e-02	ci right 7.094143e-02	k: 2041	n:30000
KS ci ratio: 2.188884e-02	ci left: 5.109938e-01	ci right 5.223363e-01	k: 15500	n:30000
PPM1A   30000 perm   5 sec   (5733 perm/sec)   p_kst 5.166667e-01   p_cons 6.803333e-02   p_joint 2.631000e-01

Outputting figure to mutsig2_images.part000000000136/PPM1A.7_1415_30000_0.51667_0.068033_0.2631.png
                gene_name: PPM1A
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 9 percent done.
PPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.926549e-02	ci left: 1.281636e-01	ci right 1.416499e-01	k: 1348	n:10000
Cons ci ratio: 8.412142e-02	ci left: 1.708424e-01	ci right 1.859454e-01	k: 1783	n:10000
KS ci ratio: 6.966016e-02	ci left: 2.320511e-01	ci right 2.489003e-01	k: 2404	n:10000
PPL   10000 perm   2 sec   (5237 perm/sec)   p_kst 2.404000e-01   p_cons 1.783000e-01   p_joint 1.348000e-01

Outputting figure to mutsig2_images.part000000000136/PPL.6_5359_10000_0.2404_0.1783_0.1348.png
                gene_name: PPL
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 11 percent done.
PPM1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.311543e-01	ci left: 7.659787e-02	ci right 8.744709e-02	k: 819	n:10000
Cons ci ratio: 1.872080e-01	ci left: 3.805695e-02	ci right 4.601263e-02	k: 419	n:10000
KS ci ratio: 7.000510e-02	ci left: 2.302732e-01	ci right 2.470793e-01	k: 2386	n:10000
PPM1E   10000 perm   2 sec   (6198 perm/sec)   p_kst 2.386000e-01   p_cons 4.190000e-02   p_joint 8.190000e-02

Joint ci ratio: 7.430647e-02	ci left: 1.175927e-01	ci right 1.267175e-01	k: 2442	n:20000
Cons ci ratio: 1.282881e-01	ci left: 4.173208e-02	ci right 4.750125e-02	k: 891	n:20000
KS ci ratio: 4.978237e-02	ci left: 2.307236e-01	ci right 2.425531e-01	k: 4732	n:20000
PPM1E   20000 perm   4 sec   (5563 perm/sec)   p_kst 2.366000e-01   p_cons 4.455000e-02   p_joint 1.221000e-01

Joint ci ratio: 6.092254e-02	ci left: 1.175600e-01	ci right 1.249802e-01	k: 3637	n:30000
Cons ci ratio: 1.026764e-01	ci left: 4.394952e-02	ci right 4.873883e-02	k: 1389	n:30000
KS ci ratio: 4.072052e-02	ci left: 2.311710e-01	ci right 2.408135e-01	k: 7079	n:30000
PPM1E   30000 perm   6 sec   (5295 perm/sec)   p_kst 2.359667e-01   p_cons 4.630000e-02   p_joint 1.212333e-01

Joint ci ratio: 5.415269e-02	ci left: 1.126797e-01	ci right 1.189762e-01	k: 4632	n:40000
Cons ci ratio: 8.855387e-02	ci left: 4.462828e-02	ci right 4.878785e-02	k: 1867	n:40000
KS ci ratio: 3.528219e-02	ci left: 2.316468e-01	ci right 2.399916e-01	k: 9432	n:40000
PPM1E   40000 perm   8 sec   (5132 perm/sec)   p_kst 2.358000e-01   p_cons 4.667500e-02   p_joint 1.158000e-01

Outputting figure to mutsig2_images.part000000000136/PPM1E.6_2296_40000_0.2358_0.046675_0.1158.png
                gene_name: PPM1E
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.047 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.049 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 13 percent done.
PPP1R13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.202230e-02	ci left: 7.516055e-01	ci right 7.684428e-01	k: 7601	n:10000
Cons ci ratio: 6.119212e-03	ci left: 9.731262e-01	ci right 9.791920e-01	k: 9763	n:10000
KS ci ratio: 2.895871e-02	ci left: 6.374410e-01	ci right 6.562734e-01	k: 6469	n:10000
PPP1R13B   10000 perm   2 sec   (5314 perm/sec)   p_kst 6.469000e-01   p_cons 9.763000e-01   p_joint 7.601000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R13B.6_3341_10000_0.6469_0.9763_0.7601.png
                gene_name: PPP1R13B
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 15 percent done.
PPP1R16B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.452959e-01	ci left: 2.184098e-02	ci right 2.803999e-02	k: 248	n:10000
Cons ci ratio: 3.576934e-02	ci left: 5.357789e-01	ci right 5.553945e-01	k: 5456	n:10000
KS ci ratio: 5.223374e-01	ci left: 4.145961e-03	ci right 7.153063e-03	k: 55	n:10000
PPP1R16B   10000 perm   1 sec   (6920 perm/sec)   p_kst 5.500000e-03   p_cons 5.456000e-01   p_joint 2.480000e-02

Joint ci ratio: 1.978447e-01	ci left: 1.734330e-02	ci right 2.119826e-02	k: 384	n:20000
Cons ci ratio: 2.581397e-02	ci left: 5.285582e-01	ci right 5.424314e-01	k: 10710	n:20000
KS ci ratio: 4.055288e-01	ci left: 3.709812e-03	ci right 5.638552e-03	k: 92	n:20000
PPP1R16B   20000 perm   3 sec   (6091 perm/sec)   p_kst 4.600000e-03   p_cons 5.355000e-01   p_joint 1.920000e-02

Joint ci ratio: 2.083036e-01	ci left: 1.045075e-02	ci right 1.291184e-02	k: 349	n:30000
Cons ci ratio: 1.981326e-02	ci left: 5.604689e-01	ci right 5.717183e-01	k: 16983	n:30000
KS ci ratio: 3.293414e-01	ci left: 3.927077e-03	ci right 5.504534e-03	k: 140	n:30000
PPP1R16B   30000 perm   5 sec   (5806 perm/sec)   p_kst 4.666667e-03   p_cons 5.661000e-01   p_joint 1.163333e-02

Joint ci ratio: 2.045243e-01	ci left: 8.168963e-03	ci right 1.005334e-02	k: 363	n:40000
Cons ci ratio: 1.760597e-02	ci left: 5.485369e-01	ci right 5.583053e-01	k: 22137	n:40000
KS ci ratio: 2.764886e-01	ci left: 4.309143e-03	ci right 5.714198e-03	k: 199	n:40000
PPP1R16B   40000 perm   7 sec   (5603 perm/sec)   p_kst 4.975000e-03   p_cons 5.534250e-01   p_joint 9.075000e-03

Joint ci ratio: 1.261017e-01	ci left: 1.776317e-02	ci right 2.017313e-02	k: 947	n:50000
Cons ci ratio: 1.567755e-02	ci left: 5.512515e-01	ci right 5.599821e-01	k: 27781	n:50000
KS ci ratio: 2.551084e-01	ci left: 4.100679e-03	ci right 5.317924e-03	k: 234	n:50000
PPP1R16B   50000 perm   9 sec   (5438 perm/sec)   p_kst 4.680000e-03   p_cons 5.556200e-01   p_joint 1.894000e-02

Joint ci ratio: 1.321637e-01	ci left: 1.349421e-02	ci right 1.541984e-02	k: 866	n:60000
Cons ci ratio: 1.429919e-02	ci left: 5.520635e-01	ci right 5.600311e-01	k: 33363	n:60000
KS ci ratio: 2.362726e-01	ci left: 4.027245e-03	ci right 5.121526e-03	k: 273	n:60000
PPP1R16B   60000 perm   11 sec   (5299 perm/sec)   p_kst 4.550000e-03   p_cons 5.560500e-01   p_joint 1.443333e-02

Joint ci ratio: 1.369346e-01	ci left: 1.077852e-02	ci right 1.237663e-02	k: 809	n:70000
Cons ci ratio: 1.322760e-02	ci left: 5.527674e-01	ci right 5.601422e-01	k: 38952	n:70000
KS ci ratio: 2.235996e-01	ci left: 3.882717e-03	ci right 4.873344e-03	k: 305	n:70000
PPP1R16B   70000 perm   14 sec   (5144 perm/sec)   p_kst 4.357143e-03   p_cons 5.564571e-01   p_joint 1.155714e-02

Joint ci ratio: 1.068355e-01	ci left: 1.566509e-02	ci right 1.744522e-02	k: 1323	n:80000
Cons ci ratio: 1.235909e-02	ci left: 5.535746e-01	ci right 5.604713e-01	k: 44562	n:80000
KS ci ratio: 2.096752e-01	ci left: 3.893918e-03	ci right 4.817594e-03	k: 347	n:80000
PPP1R16B   80000 perm   16 sec   (5003 perm/sec)   p_kst 4.337500e-03   p_cons 5.570250e-01   p_joint 1.653750e-02

Joint ci ratio: 1.071409e-01	ci left: 1.386976e-02	ci right 1.545064e-02	k: 1318	n:90000
Cons ci ratio: 1.162142e-02	ci left: 5.550816e-01	ci right 5.615813e-01	k: 50250	n:90000
KS ci ratio: 1.968022e-01	ci left: 3.956940e-03	ci right 4.831033e-03	k: 394	n:90000
PPP1R16B   90000 perm   18 sec   (4898 perm/sec)   p_kst 4.377778e-03   p_cons 5.583333e-01   p_joint 1.464444e-02

Joint ci ratio: 9.163731e-02	ci left: 1.714588e-02	ci right 1.880225e-02	k: 1796	n:100000
Cons ci ratio: 1.102044e-02	ci left: 5.554557e-01	ci right 5.616209e-01	k: 55854	n:100000
KS ci ratio: 1.847864e-01	ci left: 4.065972e-03	ci right 4.903169e-03	k: 447	n:100000
PPP1R16B   100000 perm   21 sec   (4813 perm/sec)   p_kst 4.470000e-03   p_cons 5.585400e-01   p_joint 1.796000e-02

Joint ci ratio: 9.601337e-02	ci left: 1.421006e-02	ci right 1.565204e-02	k: 1641	n:110000
Cons ci ratio: 1.049644e-02	ci left: 5.561235e-01	ci right 5.620007e-01	k: 61497	n:110000
KS ci ratio: 1.752605e-01	ci left: 4.130423e-03	ci right 4.932408e-03	k: 497	n:110000
PPP1R16B   110000 perm   23 sec   (4736 perm/sec)   p_kst 4.518182e-03   p_cons 5.590636e-01   p_joint 1.491818e-02

Joint ci ratio: 9.850491e-02	ci left: 1.238299e-02	ci right 1.367404e-02	k: 1562	n:120000
Cons ci ratio: 1.003510e-02	ci left: 5.569607e-01	ci right 5.625864e-01	k: 67173	n:120000
KS ci ratio: 1.678416e-01	ci left: 4.145128e-03	ci right 4.912453e-03	k: 542	n:120000
PPP1R16B   120000 perm   26 sec   (4655 perm/sec)   p_kst 4.516667e-03   p_cons 5.597750e-01   p_joint 1.301667e-02

Joint ci ratio: 1.007981e-01	ci left: 1.091999e-02	ci right 1.208657e-02	k: 1494	n:130000
Cons ci ratio: 9.646646e-03	ci left: 5.568039e-01	ci right 5.622088e-01	k: 72736	n:130000
KS ci ratio: 1.628286e-01	ci left: 4.076977e-03	ci right 4.806937e-03	k: 576	n:130000
PPP1R16B   130000 perm   28 sec   (4570 perm/sec)   p_kst 4.430769e-03   p_cons 5.595077e-01   p_joint 1.149231e-02

Joint ci ratio: 1.005345e-01	ci left: 1.020247e-02	ci right 1.128937e-02	k: 1503	n:140000
Cons ci ratio: 9.297239e-03	ci left: 5.568232e-01	ci right 5.620314e-01	k: 78320	n:140000
KS ci ratio: 1.591575e-01	ci left: 3.970834e-03	ci right 4.664228e-03	k: 603	n:140000
PPP1R16B   140000 perm   31 sec   (4494 perm/sec)   p_kst 4.307143e-03   p_cons 5.594286e-01   p_joint 1.073571e-02

Joint ci ratio: 9.996840e-02	ci left: 9.639152e-03	ci right 1.065992e-02	k: 1521	n:150000
Cons ci ratio: 8.975954e-03	ci left: 5.572434e-01	ci right 5.622743e-01	k: 83964	n:150000
KS ci ratio: 1.538974e-01	ci left: 3.975147e-03	ci right 4.644236e-03	k: 645	n:150000
PPP1R16B   150000 perm   34 sec   (4416 perm/sec)   p_kst 4.300000e-03   p_cons 5.597600e-01   p_joint 1.014000e-02

Joint ci ratio: 9.053521e-02	ci left: 1.105663e-02	ci right 1.211118e-02	k: 1852	n:160000
Cons ci ratio: 8.681416e-03	ci left: 5.578637e-01	ci right 5.627341e-01	k: 89648	n:160000
KS ci ratio: 1.489093e-01	ci left: 3.991286e-03	ci right 4.639378e-03	k: 689	n:160000
PPP1R16B   160000 perm   37 sec   (4347 perm/sec)   p_kst 4.306250e-03   p_cons 5.603000e-01   p_joint 1.157500e-02

Joint ci ratio: 8.832843e-02	ci left: 1.094679e-02	ci right 1.196409e-02	k: 1946	n:170000
Cons ci ratio: 8.425232e-03	ci left: 5.577600e-01	ci right 5.624850e-01	k: 95221	n:170000
KS ci ratio: 1.448731e-01	ci left: 3.977483e-03	ci right 4.604313e-03	k: 728	n:170000
PPP1R16B   170000 perm   40 sec   (4265 perm/sec)   p_kst 4.282353e-03   p_cons 5.601235e-01   p_joint 1.144706e-02

Joint ci ratio: 8.725358e-02	ci left: 1.060480e-02	ci right 1.157771e-02	k: 1995	n:180000
Cons ci ratio: 8.186494e-03	ci left: 5.579088e-01	ci right 5.625004e-01	k: 100837	n:180000
KS ci ratio: 1.413333e-01	ci left: 3.954704e-03	ci right 4.561433e-03	k: 765	n:180000
PPP1R16B   180000 perm   43 sec   (4205 perm/sec)   p_kst 4.250000e-03   p_cons 5.602056e-01   p_joint 1.108333e-02

Joint ci ratio: 7.593602e-02	ci left: 1.330606e-02	ci right 1.436148e-02	k: 2627	n:190000
Cons ci ratio: 7.962540e-03	ci left: 5.583174e-01	ci right 5.627860e-01	k: 106505	n:190000
KS ci ratio: 1.377826e-01	ci left: 3.949737e-03	ci right 4.539231e-03	k: 805	n:190000
PPP1R16B   190000 perm   46 sec   (4144 perm/sec)   p_kst 4.236842e-03   p_cons 5.605526e-01   p_joint 1.382632e-02

Joint ci ratio: 7.578751e-02	ci left: 1.269947e-02	ci right 1.370471e-02	k: 2639	n:200000
Cons ci ratio: 7.759551e-03	ci left: 5.584615e-01	ci right 5.628167e-01	k: 112128	n:200000
KS ci ratio: 1.335389e-01	ci left: 4.003435e-03	ci right 4.581078e-03	k: 857	n:200000
PPP1R16B   200000 perm   49 sec   (4083 perm/sec)   p_kst 4.285000e-03   p_cons 5.606400e-01   p_joint 1.319500e-02

Joint ci ratio: 7.671426e-02	ci left: 1.180959e-02	ci right 1.275633e-02	k: 2578	n:210000
Cons ci ratio: 7.577556e-03	ci left: 5.581882e-01	ci right 5.624387e-01	k: 117666	n:210000
KS ci ratio: 1.305318e-01	ci left: 3.996979e-03	ci right 4.559697e-03	k: 897	n:210000
PPP1R16B   210000 perm   52 sec   (4020 perm/sec)   p_kst 4.271429e-03   p_cons 5.603143e-01   p_joint 1.227619e-02

Joint ci ratio: 7.631783e-02	ci left: 1.139753e-02	ci right 1.230631e-02	k: 2606	n:220000
Cons ci ratio: 7.402050e-03	ci left: 5.583229e-01	ci right 5.624755e-01	k: 123288	n:220000
KS ci ratio: 1.279247e-01	ci left: 3.978040e-03	ci right 4.526057e-03	k: 934	n:220000
PPP1R16B   220000 perm   55 sec   (3966 perm/sec)   p_kst 4.245455e-03   p_cons 5.604000e-01   p_joint 1.184545e-02

Joint ci ratio: 7.565096e-02	ci left: 1.110239e-02	ci right 1.197955e-02	k: 2653	n:230000
Cons ci ratio: 7.243056e-03	ci left: 5.581163e-01	ci right 5.621778e-01	k: 128834	n:230000
KS ci ratio: 1.248885e-01	ci left: 3.998760e-03	ci right 4.535590e-03	k: 980	n:230000
PPP1R16B   230000 perm   59 sec   (3906 perm/sec)   p_kst 4.260870e-03   p_cons 5.601478e-01   p_joint 1.153478e-02

Joint ci ratio: 7.693991e-02	ci left: 1.028812e-02	ci right 1.111542e-02	k: 2567	n:240000
Cons ci ratio: 7.092622e-03	ci left: 5.580154e-01	ci right 5.619914e-01	k: 134401	n:240000
KS ci ratio: 1.220587e-01	ci left: 4.017895e-03	ci right 4.544188e-03	k: 1026	n:240000
PPP1R16B   240000 perm   62 sec   (3852 perm/sec)   p_kst 4.275000e-03   p_cons 5.600042e-01   p_joint 1.069583e-02

Joint ci ratio: 7.837183e-02	ci left: 9.519520e-03	ci right 1.029991e-02	k: 2476	n:250000
Cons ci ratio: 6.954573e-03	ci left: 5.576833e-01	ci right 5.615793e-01	k: 139908	n:250000
KS ci ratio: 1.199757e-01	ci left: 3.996817e-03	ci right 4.510781e-03	k: 1062	n:250000
PPP1R16B   250000 perm   66 sec   (3796 perm/sec)   p_kst 4.248000e-03   p_cons 5.596320e-01   p_joint 9.904000e-03

Joint ci ratio: 6.704654e-02	ci left: 1.254163e-02	ci right 1.341543e-02	k: 3373	n:260000
Cons ci ratio: 6.816878e-03	ci left: 5.579124e-01	ci right 5.617324e-01	k: 145554	n:260000
KS ci ratio: 1.180498e-01	ci left: 3.973698e-03	ci right 4.475914e-03	k: 1097	n:260000
PPP1R16B   260000 perm   69 sec   (3742 perm/sec)   p_kst 4.219231e-03   p_cons 5.598231e-01   p_joint 1.297308e-02

Joint ci ratio: 6.719408e-02	ci left: 1.202968e-02	ci right 1.286972e-02	k: 3360	n:270000
Cons ci ratio: 6.687803e-03	ci left: 5.580696e-01	ci right 5.618180e-01	k: 151185	n:270000
KS ci ratio: 1.161108e-01	ci left: 3.959546e-03	ci right 4.451190e-03	k: 1134	n:270000
PPP1R16B   270000 perm   73 sec   (3688 perm/sec)   p_kst 4.200000e-03   p_cons 5.599444e-01   p_joint 1.244444e-02

Joint ci ratio: 6.773124e-02	ci left: 1.142086e-02	ci right 1.222501e-02	k: 3309	n:280000
Cons ci ratio: 6.572218e-03	ci left: 5.577338e-01	ci right 5.614150e-01	k: 156681	n:280000
KS ci ratio: 1.137779e-01	ci left: 3.981168e-03	ci right 4.464897e-03	k: 1181	n:280000
PPP1R16B   280000 perm   77 sec   (3639 perm/sec)   p_kst 4.217857e-03   p_cons 5.595750e-01   p_joint 1.181786e-02

Joint ci ratio: 7.810849e-02	ci left: 8.273892e-03	ci right 8.949776e-03	k: 2496	n:290000
Cons ci ratio: 6.456815e-03	ci left: 5.578495e-01	ci right 5.614665e-01	k: 162301	n:290000
KS ci ratio: 1.129261e-01	ci left: 3.904186e-03	ci right 4.374774e-03	k: 1199	n:290000
PPP1R16B   290000 perm   81 sec   (3595 perm/sec)   p_kst 4.134483e-03   p_cons 5.596586e-01   p_joint 8.606897e-03

Joint ci ratio: 7.771284e-02	ci left: 8.083043e-03	ci right 8.739840e-03	k: 2522	n:300000
Cons ci ratio: 6.345954e-03	ci left: 5.580614e-01	ci right 5.616174e-01	k: 167952	n:300000
KS ci ratio: 1.104214e-01	ci left: 3.952265e-03	ci right 4.417394e-03	k: 1254	n:300000
PPP1R16B   300000 perm   85 sec   (3549 perm/sec)   p_kst 4.180000e-03   p_cons 5.598400e-01   p_joint 8.406667e-03

Joint ci ratio: 7.867215e-02	ci left: 7.632466e-03	ci right 8.260656e-03	k: 2462	n:310000
Cons ci ratio: 6.242574e-03	ci left: 5.581052e-01	ci right 5.616033e-01	k: 173555	n:310000
KS ci ratio: 1.087030e-01	ci left: 3.950268e-03	ci right 4.407464e-03	k: 1294	n:310000
PPP1R16B   310000 perm   88 sec   (3505 perm/sec)   p_kst 4.174194e-03   p_cons 5.598548e-01   p_joint 7.941935e-03

Joint ci ratio: 7.778007e-02	ci left: 7.568582e-03	ci right 8.184130e-03	k: 2519	n:320000
Cons ci ratio: 6.146893e-03	ci left: 5.579216e-01	ci right 5.613648e-01	k: 179086	n:320000
KS ci ratio: 1.073860e-01	ci left: 3.924117e-03	ci right 4.372436e-03	k: 1326	n:320000
PPP1R16B   320000 perm   93 sec   (3458 perm/sec)   p_kst 4.143750e-03   p_cons 5.596437e-01   p_joint 7.871875e-03

Joint ci ratio: 7.037222e-02	ci left: 8.987215e-03	ci right 9.645688e-03	k: 3073	n:330000
Cons ci ratio: 6.054473e-03	ci left: 5.578314e-01	ci right 5.612221e-01	k: 184644	n:330000
KS ci ratio: 1.057646e-01	ci left: 3.926135e-03	ci right 4.367491e-03	k: 1367	n:330000
PPP1R16B   330000 perm   97 sec   (3416 perm/sec)   p_kst 4.142424e-03   p_cons 5.595273e-01   p_joint 9.312121e-03

Joint ci ratio: 6.998103e-02	ci left: 8.823994e-03	ci right 9.466767e-03	k: 3108	n:340000
Cons ci ratio: 5.964320e-03	ci left: 5.578940e-01	ci right 5.612343e-01	k: 190252	n:340000
KS ci ratio: 1.044754e-01	ci left: 3.908030e-03	ci right 4.341666e-03	k: 1401	n:340000
PPP1R16B   340000 perm   101 sec   (3374 perm/sec)   p_kst 4.120588e-03   p_cons 5.595647e-01   p_joint 9.141176e-03

Joint ci ratio: 7.086949e-02	ci left: 8.358490e-03	ci right 8.975401e-03	k: 3032	n:350000
Cons ci ratio: 5.880633e-03	ci left: 5.577391e-01	ci right 5.610314e-01	k: 195785	n:350000
KS ci ratio: 1.026596e-01	ci left: 3.935531e-03	ci right 4.364171e-03	k: 1451	n:350000
PPP1R16B   350000 perm   105 sec   (3331 perm/sec)   p_kst 4.145714e-03   p_cons 5.593857e-01   p_joint 8.662857e-03

Joint ci ratio: 6.513381e-02	ci left: 9.636541e-03	ci right 1.028805e-02	k: 3585	n:360000
Cons ci ratio: 5.798444e-03	ci left: 5.577569e-01	ci right 5.610032e-01	k: 201377	n:360000
KS ci ratio: 1.013425e-01	ci left: 3.929073e-03	ci right 4.351192e-03	k: 1489	n:360000
PPP1R16B   360000 perm   110 sec   (3286 perm/sec)   p_kst 4.136111e-03   p_cons 5.593806e-01   p_joint 9.958333e-03

Joint ci ratio: 6.481494e-02	ci left: 9.471785e-03	ci right 1.010890e-02	k: 3621	n:370000
Cons ci ratio: 5.718478e-03	ci left: 5.578715e-01	ci right 5.610735e-01	k: 207005	n:370000
KS ci ratio: 1.000420e-01	ci left: 3.925632e-03	ci right 4.341652e-03	k: 1528	n:370000
PPP1R16B   370000 perm   114 sec   (3243 perm/sec)   p_kst 4.129730e-03   p_cons 5.594730e-01   p_joint 9.786486e-03

Joint ci ratio: 6.037003e-02	ci left: 1.064227e-02	ci right 1.130732e-02	k: 4169	n:380000
Cons ci ratio: 5.644172e-03	ci left: 5.577671e-01	ci right 5.609267e-01	k: 212552	n:380000
KS ci ratio: 9.920416e-02	ci left: 3.889039e-03	ci right 4.297528e-03	k: 1554	n:380000
PPP1R16B   380000 perm   119 sec   (3205 perm/sec)   p_kst 4.089474e-03   p_cons 5.593474e-01   p_joint 1.097105e-02

Outputting figure to mutsig2_images.part000000000136/PPP1R16B.6_1744_380000_0.0040895_0.55935_0.010971.png
                gene_name: PPP1R16B
               theta_stop: 0.099 
                    nperm: 380000 
                     p_ks: 0.0041 
        ci_ks_bounds_left: 0.0039 
       ci_ks_bounds_right: 0.0043 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.011 

Current progress: 17 percent done.
PPP1R3F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.210993e-02	ci left: 2.198072e-01	ci right 2.363514e-01	k: 2280	n:10000
Cons ci ratio: 5.065070e-02	ci left: 3.650016e-01	ci right 3.840715e-01	k: 3745	n:10000
KS ci ratio: 8.802117e-02	ci left: 1.581661e-01	ci right 1.728293e-01	k: 1654	n:10000
PPP1R3F   10000 perm   2 sec   (6192 perm/sec)   p_kst 1.654000e-01   p_cons 3.745000e-01   p_joint 2.280000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R3F.6_2416_10000_0.1654_0.3745_0.228.png
                gene_name: PPP1R3F
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 19 percent done.
PPRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.275020e-02	ci left: 2.718089e-01	ci right 2.895190e-01	k: 2806	n:10000
Cons ci ratio: 9.349504e-02	ci left: 1.424659e-01	ci right 1.565389e-01	k: 1494	n:10000
KS ci ratio: 3.493343e-02	ci left: 5.474992e-01	ci right 5.670674e-01	k: 5573	n:10000
PPRC1   10000 perm   2 sec   (5097 perm/sec)   p_kst 5.573000e-01   p_cons 1.494000e-01   p_joint 2.806000e-01

Outputting figure to mutsig2_images.part000000000136/PPRC1.6_5051_10000_0.5573_0.1494_0.2806.png
                gene_name: PPRC1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 20 percent done.
PPIP5K2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.472899e-02	ci left: 1.687778e-01	ci right 1.838112e-01	k: 1762	n:10000
Cons ci ratio: 1.200103e-01	ci left: 9.058624e-02	ci right 1.022501e-01	k: 963	n:10000
KS ci ratio: 3.883525e-02	ci left: 4.947505e-01	ci right 5.144469e-01	k: 5046	n:10000
PPIP5K2   10000 perm   2 sec   (5611 perm/sec)   p_kst 5.046000e-01   p_cons 9.630000e-02   p_joint 1.762000e-01

Joint ci ratio: 3.467717e-02	ci left: 3.830323e-01	ci right 3.965997e-01	k: 7796	n:20000
Cons ci ratio: 8.098908e-02	ci left: 1.005877e-01	ci right 1.091276e-01	k: 2096	n:20000
KS ci ratio: 2.677900e-02	ci left: 5.102475e-01	ci right 5.241475e-01	k: 10344	n:20000
PPIP5K2   20000 perm   4 sec   (5068 perm/sec)   p_kst 5.172000e-01   p_cons 1.048000e-01   p_joint 3.898000e-01

Outputting figure to mutsig2_images.part000000000136/PPIP5K2.5_3785_20000_0.5172_0.1048_0.3898.png
                gene_name: PPIP5K2
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 22 percent done.
PPM1N
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.126117e-02	ci left: 2.815149e-01	ci right 2.994073e-01	k: 2904	n:10000
Cons ci ratio: 5.888151e-02	ci left: 2.979669e-01	ci right 3.161456e-01	k: 3070	n:10000
KS ci ratio: 1.275454e-01	ci left: 8.077027e-02	ci right 9.187210e-02	k: 862	n:10000
PPM1N   10000 perm   1 sec   (6767 perm/sec)   p_kst 8.620000e-02   p_cons 3.070000e-01   p_joint 2.904000e-01

Joint ci ratio: 5.693519e-02	ci left: 1.861163e-01	ci right 1.970735e-01	k: 3831	n:20000
Cons ci ratio: 4.265018e-02	ci left: 2.905728e-01	ci right 3.032863e-01	k: 5938	n:20000
KS ci ratio: 9.138306e-02	ci left: 8.038716e-02	ci right 8.813421e-02	k: 1684	n:20000
PPM1N   20000 perm   3 sec   (5995 perm/sec)   p_kst 8.420000e-02   p_cons 2.969000e-01   p_joint 1.915500e-01

Outputting figure to mutsig2_images.part000000000136/PPM1N.5_1313_20000_0.0842_0.2969_0.19155.png
                gene_name: PPM1N
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 24 percent done.
PPP1R15A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.811568e-02	ci left: 3.035202e-01	ci right 3.217891e-01	k: 3126	n:10000
Cons ci ratio: 2.637780e-02	ci left: 6.791178e-01	ci right 6.973724e-01	k: 6883	n:10000
KS ci ratio: 9.871639e-02	ci left: 1.294361e-01	ci right 1.429766e-01	k: 1361	n:10000
PPP1R15A   10000 perm   2 sec   (6365 perm/sec)   p_kst 1.361000e-01   p_cons 6.883000e-01   p_joint 3.126000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R15A.5_2033_10000_0.1361_0.6883_0.3126.png
                gene_name: PPP1R15A
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 26 percent done.
PPP2R3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.434149e-02	ci left: 7.128025e-01	ci right 7.304682e-01	k: 7217	n:10000
Cons ci ratio: 1.803054e-02	ci left: 8.178151e-01	ci right 8.327949e-01	k: 8254	n:10000
KS ci ratio: 3.505392e-02	ci left: 5.457959e-01	ci right 5.653717e-01	k: 5556	n:10000
PPP2R3A   10000 perm   2 sec   (5419 perm/sec)   p_kst 5.556000e-01   p_cons 8.254000e-01   p_joint 7.217000e-01

Outputting figure to mutsig2_images.part000000000136/PPP2R3A.5_3641_10000_0.5556_0.8254_0.7217.png
                gene_name: PPP2R3A
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 28 percent done.
PPP2R3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.783063e-02	ci left: 5.078524e-01	ci right 5.275373e-01	k: 5177	n:10000
Cons ci ratio: 7.698126e-02	ci left: 1.979127e-01	ci right 2.138590e-01	k: 2058	n:10000
KS ci ratio: 1.721173e-02	ci left: 8.310374e-01	ci right 8.455650e-01	k: 8384	n:10000
PPP2R3C   10000 perm   2 sec   (6543 perm/sec)   p_kst 8.384000e-01   p_cons 2.058000e-01   p_joint 5.177000e-01

Outputting figure to mutsig2_images.part000000000136/PPP2R3C.5_1414_10000_0.8384_0.2058_0.5177.png
                gene_name: PPP2R3C
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 30 percent done.
PPP3CB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
Cons ci ratio: 6.478410e-02	ci left: 2.592386e-01	ci right 2.766968e-01	k: 2679	n:10000
KS ci ratio: 3.376227e-01	ci left: 1.105573e-02	ci right 1.563427e-02	k: 132	n:10000
PPP3CB   10000 perm   2 sec   (6213 perm/sec)   p_kst 1.320000e-02   p_cons 2.679000e-01   p_joint 3.740000e-02

Joint ci ratio: 1.419064e-01	ci left: 3.413670e-02	ci right 3.939908e-02	k: 734	n:20000
Cons ci ratio: 4.554256e-02	ci left: 2.641041e-01	ci right 2.764627e-01	k: 5405	n:20000
KS ci ratio: 2.360574e-01	ci left: 1.199373e-02	ci right 1.524994e-02	k: 271	n:20000
PPP3CB   20000 perm   4 sec   (5567 perm/sec)   p_kst 1.355000e-02   p_cons 2.702500e-01   p_joint 3.670000e-02

Joint ci ratio: 1.489458e-01	ci left: 2.088364e-02	ci right 2.427636e-02	k: 676	n:30000
Cons ci ratio: 3.739709e-02	ci left: 2.630271e-01	ci right 2.730845e-01	k: 8041	n:30000
KS ci ratio: 1.964352e-01	ci left: 1.181229e-02	ci right 1.441660e-02	k: 392	n:30000
PPP3CB   30000 perm   6 sec   (5333 perm/sec)   p_kst 1.306667e-02   p_cons 2.680333e-01   p_joint 2.253333e-02

Joint ci ratio: 1.198438e-01	ci left: 2.448676e-02	ci right 2.763256e-02	k: 1041	n:40000
Cons ci ratio: 3.248758e-02	ci left: 2.624951e-01	ci right 2.711888e-01	k: 10673	n:40000
KS ci ratio: 1.729844e-01	ci left: 1.157778e-02	ci right 1.379381e-02	k: 506	n:40000
PPP3CB   40000 perm   8 sec   (5156 perm/sec)   p_kst 1.265000e-02   p_cons 2.668250e-01   p_joint 2.602500e-02

Joint ci ratio: 1.165055e-01	ci left: 2.084867e-02	ci right 2.344723e-02	k: 1106	n:50000
Cons ci ratio: 2.908976e-02	ci left: 2.625288e-01	ci right 2.702984e-01	k: 13320	n:50000
KS ci ratio: 1.541995e-01	ci left: 1.177534e-02	ci right 1.376182e-02	k: 637	n:50000
PPP3CB   50000 perm   10 sec   (5018 perm/sec)   p_kst 1.274000e-02   p_cons 2.664000e-01   p_joint 2.212000e-02

Joint ci ratio: 1.244504e-01	ci left: 1.525344e-02	ci right 1.729374e-02	k: 975	n:60000
Cons ci ratio: 2.667942e-02	ci left: 2.610569e-01	ci right 2.681326e-01	k: 15875	n:60000
KS ci ratio: 1.420479e-01	ci left: 1.164240e-02	ci right 1.343855e-02	k: 751	n:60000
PPP3CB   60000 perm   12 sec   (4910 perm/sec)   p_kst 1.251667e-02   p_cons 2.645833e-01   p_joint 1.625000e-02

Joint ci ratio: 1.029648e-01	ci left: 1.924022e-02	ci right 2.134266e-02	k: 1419	n:70000
Cons ci ratio: 2.470216e-02	ci left: 2.612922e-01	ci right 2.678416e-01	k: 18519	n:70000
KS ci ratio: 1.327682e-01	ci left: 1.148279e-02	ci right 1.312944e-02	k: 860	n:70000
PPP3CB   70000 perm   15 sec   (4808 perm/sec)   p_kst 1.228571e-02   p_cons 2.645571e-01   p_joint 2.027143e-02

Joint ci ratio: 9.951879e-02	ci left: 1.807737e-02	ci right 1.998274e-02	k: 1521	n:80000
Cons ci ratio: 2.311323e-02	ci left: 2.613961e-01	ci right 2.675209e-01	k: 21156	n:80000
KS ci ratio: 1.249671e-01	ci left: 1.139020e-02	ci right 1.292048e-02	k: 971	n:80000
PPP3CB   80000 perm   17 sec   (4712 perm/sec)   p_kst 1.213750e-02   p_cons 2.644500e-01   p_joint 1.901250e-02

Joint ci ratio: 8.535211e-02	ci left: 2.192170e-02	ci right 2.388700e-02	k: 2060	n:90000
Cons ci ratio: 2.179176e-02	ci left: 2.615651e-01	ci right 2.673389e-01	k: 23800	n:90000
KS ci ratio: 1.176841e-01	ci left: 1.146063e-02	ci right 1.290440e-02	k: 1095	n:90000
PPP3CB   90000 perm   20 sec   (4607 perm/sec)   p_kst 1.216667e-02   p_cons 2.644444e-01   p_joint 2.288889e-02

Joint ci ratio: 8.994462e-02	ci left: 1.780093e-02	ci right 1.948715e-02	k: 1863	n:100000
Cons ci ratio: 2.064883e-02	ci left: 2.621768e-01	ci right 2.676569e-01	k: 26491	n:100000
KS ci ratio: 1.127170e-01	ci left: 1.127599e-02	ci right 1.263254e-02	k: 1194	n:100000
PPP3CB   100000 perm   22 sec   (4523 perm/sec)   p_kst 1.194000e-02   p_cons 2.649100e-01   p_joint 1.863000e-02

Joint ci ratio: 9.226312e-02	ci left: 1.540000e-02	ci right 1.689840e-02	k: 1775	n:110000
Cons ci ratio: 1.970546e-02	ci left: 2.619586e-01	ci right 2.671811e-01	k: 29102	n:110000
KS ci ratio: 1.076166e-01	ci left: 1.127639e-02	ci right 1.256772e-02	k: 1310	n:110000
PPP3CB   110000 perm   25 sec   (4433 perm/sec)   p_kst 1.190909e-02   p_cons 2.645636e-01   p_joint 1.613636e-02

Joint ci ratio: 9.118638e-02	ci left: 1.447460e-02	ci right 1.586564e-02	k: 1819	n:120000
Cons ci ratio: 1.882853e-02	ci left: 2.628534e-01	ci right 2.678579e-01	k: 31842	n:120000
KS ci ratio: 1.052617e-01	ci left: 1.082325e-02	ci right 1.203387e-02	k: 1370	n:120000
PPP3CB   120000 perm   28 sec   (4338 perm/sec)   p_kst 1.141667e-02   p_cons 2.653500e-01   p_joint 1.515833e-02

Joint ci ratio: 8.117289e-02	ci left: 1.690722e-02	ci right 1.834518e-02	k: 2290	n:130000
Cons ci ratio: 1.806014e-02	ci left: 2.635918e-01	ci right 2.684033e-01	k: 34579	n:130000
KS ci ratio: 1.011064e-01	ci left: 1.085249e-02	ci right 1.201561e-02	k: 1485	n:130000
PPP3CB   130000 perm   31 sec   (4259 perm/sec)   p_kst 1.142308e-02   p_cons 2.659923e-01   p_joint 1.761538e-02

Joint ci ratio: 7.592237e-02	ci left: 1.797579e-02	ci right 1.940138e-02	k: 2615	n:140000
Cons ci ratio: 1.738729e-02	ci left: 2.640357e-01	ci right 2.686739e-01	k: 37289	n:140000
KS ci ratio: 9.685797e-02	ci left: 1.100384e-02	ci right 1.213081e-02	k: 1618	n:140000
PPP3CB   140000 perm   33 sec   (4195 perm/sec)   p_kst 1.155714e-02   p_cons 2.663500e-01   p_joint 1.867857e-02

Outputting figure to mutsig2_images.part000000000136/PPP3CB.5_1634_140000_0.011557_0.26635_0.018679.png
                gene_name: PPP3CB
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 31 percent done.
PPM1D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.702786e-01	ci left: 1.781300e-02	ci right 2.347108e-02	k: 205	n:10000
Cons ci ratio: 1.833616e-02	ci left: 8.128353e-01	ci right 8.279776e-01	k: 8205	n:10000
KS ci ratio: 3.428867e-01	ci left: 1.068957e-02	ci right 1.520079e-02	k: 128	n:10000
PPM1D   10000 perm   2 sec   (6419 perm/sec)   p_kst 1.280000e-02   p_cons 8.205000e-01   p_joint 2.050000e-02

Joint ci ratio: 1.522032e-01	ci left: 2.965219e-02	ci right 3.458507e-02	k: 641	n:20000
Cons ci ratio: 1.250287e-02	ci left: 8.256827e-01	ci right 8.361209e-01	k: 16619	n:20000
KS ci ratio: 2.396559e-01	ci left: 1.161730e-02	ci right 1.482653e-02	k: 263	n:20000
PPM1D   20000 perm   3 sec   (5734 perm/sec)   p_kst 1.315000e-02   p_cons 8.309500e-01   p_joint 3.205000e-02

Joint ci ratio: 1.100631e-01	ci left: 3.832970e-02	ci right 4.282649e-02	k: 1216	n:30000
Cons ci ratio: 1.054277e-02	ci left: 8.173209e-01	ci right 8.260167e-01	k: 24651	n:30000
KS ci ratio: 1.964352e-01	ci left: 1.181229e-02	ci right 1.441660e-02	k: 392	n:30000
PPM1D   30000 perm   5 sec   (5474 perm/sec)   p_kst 1.306667e-02   p_cons 8.217000e-01   p_joint 4.053333e-02

Joint ci ratio: 9.467098e-02	ci left: 3.915097e-02	ci right 4.306601e-02	k: 1643	n:40000
Cons ci ratio: 9.131807e-03	ci left: 8.178628e-01	ci right 8.253905e-01	k: 32866	n:40000
KS ci ratio: 1.672317e-01	ci left: 1.241596e-02	ci right 1.470546e-02	k: 541	n:40000
PPM1D   40000 perm   8 sec   (5255 perm/sec)   p_kst 1.352500e-02   p_cons 8.216500e-01   p_joint 4.107500e-02

Joint ci ratio: 9.058566e-02	ci left: 3.446236e-02	ci right 3.775178e-02	k: 1804	n:50000
Cons ci ratio: 8.413311e-03	ci left: 8.093528e-01	ci right 8.162108e-01	k: 40640	n:50000
KS ci ratio: 1.505372e-01	ci left: 1.237199e-02	ci right 1.440509e-02	k: 668	n:50000
PPM1D   50000 perm   10 sec   (5098 perm/sec)   p_kst 1.336000e-02   p_cons 8.128000e-01   p_joint 3.608000e-02

Joint ci ratio: 8.611313e-02	ci left: 3.194393e-02	ci right 3.483477e-02	k: 2002	n:60000
Cons ci ratio: 7.690346e-03	ci left: 8.092529e-01	ci right 8.155169e-01	k: 48744	n:60000
KS ci ratio: 1.367153e-01	ci left: 1.259186e-02	ci right 1.445563e-02	k: 810	n:60000
PPM1D   60000 perm   12 sec   (4984 perm/sec)   p_kst 1.350000e-02   p_cons 8.124000e-01   p_joint 3.336667e-02

Joint ci ratio: 7.764950e-02	ci left: 3.376287e-02	ci right 3.650441e-02	k: 2458	n:70000
Cons ci ratio: 7.111858e-03	ci left: 8.098328e-01	ci right 8.156270e-01	k: 56892	n:70000
KS ci ratio: 1.262474e-01	ci left: 1.272737e-02	ci right 1.445616e-02	k: 950	n:70000
PPM1D   70000 perm   14 sec   (4872 perm/sec)   p_kst 1.357143e-02   p_cons 8.127429e-01   p_joint 3.511429e-02

Joint ci ratio: 7.551250e-02	ci left: 3.135559e-02	ci right 3.382846e-02	k: 2606	n:80000
Cons ci ratio: 6.629688e-03	ci left: 8.110724e-01	ci right 8.164798e-01	k: 65103	n:80000
KS ci ratio: 1.188082e-01	ci left: 1.262681e-02	ci right 1.423376e-02	k: 1073	n:80000
PPM1D   80000 perm   17 sec   (4773 perm/sec)   p_kst 1.341250e-02   p_cons 8.137875e-01   p_joint 3.257500e-02

Joint ci ratio: 7.936787e-02	ci left: 2.534052e-02	ci right 2.744571e-02	k: 2374	n:90000
Cons ci ratio: 6.249809e-03	ci left: 8.112635e-01	ci right 8.163607e-01	k: 73244	n:90000
KS ci ratio: 1.118845e-01	ci left: 1.270218e-02	ci right 1.421830e-02	k: 1210	n:90000
PPM1D   90000 perm   19 sec   (4684 perm/sec)   p_kst 1.344444e-02   p_cons 8.138222e-01   p_joint 2.637778e-02

Joint ci ratio: 7.964732e-02	ci left: 2.270721e-02	ci right 2.460056e-02	k: 2364	n:100000
Cons ci ratio: 5.917583e-03	ci left: 8.119863e-01	ci right 8.168155e-01	k: 81441	n:100000
KS ci ratio: 1.053348e-01	ci left: 1.293997e-02	ci right 1.438845e-02	k: 1365	n:100000
PPM1D   100000 perm   22 sec   (4586 perm/sec)   p_kst 1.365000e-02   p_cons 8.144100e-01   p_joint 2.364000e-02

Joint ci ratio: 7.068304e-02	ci left: 2.623773e-02	ci right 2.816913e-02	k: 2991	n:110000
Cons ci ratio: 5.620139e-03	ci left: 8.132862e-01	ci right 8.178789e-01	k: 89715	n:110000
KS ci ratio: 1.011727e-01	ci left: 1.278201e-02	ci right 1.415291e-02	k: 1480	n:110000
PPM1D   110000 perm   24 sec   (4505 perm/sec)   p_kst 1.345455e-02   p_cons 8.155909e-01   p_joint 2.719091e-02

Joint ci ratio: 6.683657e-02	ci left: 2.693448e-02	ci right 2.880509e-02	k: 3343	n:120000
Cons ci ratio: 5.381007e-03	ci left: 8.133773e-01	ci right 8.177741e-01	k: 97870	n:120000
KS ci ratio: 9.734408e-02	ci left: 1.268386e-02	ci right 1.398981e-02	k: 1599	n:120000
PPM1D   120000 perm   27 sec   (4425 perm/sec)   p_kst 1.332500e-02   p_cons 8.155833e-01   p_joint 2.785833e-02

Outputting figure to mutsig2_images.part000000000136/PPM1D.4_1842_120000_0.013325_0.81558_0.027858.png
                gene_name: PPM1D
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.029 

Current progress: 33 percent done.
PPM1H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.118333e-02	ci left: 9.194566e-01	ci right 9.298944e-01	k: 9248	n:10000
Cons ci ratio: 3.253919e-02	ci left: 5.822919e-01	ci right 6.016545e-01	k: 5920	n:10000
KS ci ratio: 2.465674e-02	ci left: 7.075543e-01	ci right 7.253194e-01	k: 7165	n:10000
PPM1H   10000 perm   2 sec   (6241 perm/sec)   p_kst 7.165000e-01   p_cons 5.920000e-01   p_joint 9.248000e-01

Outputting figure to mutsig2_images.part000000000136/PPM1H.4_1585_10000_0.7165_0.592_0.9248.png
                gene_name: PPM1H
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 35 percent done.
PPM1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.375804e-01	ci left: 2.334629e-02	ci right 2.973355e-02	k: 264	n:10000
Cons ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
KS ci ratio: 8.745193e-02	ci left: 1.599340e-01	ci right 1.746603e-01	k: 1672	n:10000
PPM1L   10000 perm   1 sec   (7116 perm/sec)   p_kst 1.672000e-01   p_cons 1.090000e-02   p_joint 2.640000e-02

Joint ci ratio: 1.332089e-01	ci left: 3.872934e-02	ci right 4.430495e-02	k: 829	n:20000
Cons ci ratio: 2.622204e-01	ci left: 9.600898e-03	ci right 1.254384e-02	k: 220	n:20000
KS ci ratio: 6.287981e-02	ci left: 1.575597e-01	ci right 1.678386e-01	k: 3253	n:20000
PPM1L   20000 perm   3 sec   (6148 perm/sec)   p_kst 1.626500e-01   p_cons 1.100000e-02   p_joint 4.145000e-02

Joint ci ratio: 1.151907e-01	ci left: 3.502189e-02	ci right 3.933500e-02	k: 1114	n:30000
Cons ci ratio: 2.159224e-01	ci left: 9.692830e-03	ci right 1.206999e-02	k: 325	n:30000
KS ci ratio: 5.089994e-02	ci left: 1.608487e-01	ci right 1.692830e-01	k: 4951	n:30000
PPM1L   30000 perm   5 sec   (5905 perm/sec)   p_kst 1.650333e-01   p_cons 1.083333e-02   p_joint 3.713333e-02

Joint ci ratio: 1.614416e-01	ci left: 1.335138e-02	ci right 1.571987e-02	k: 580	n:40000
Cons ci ratio: 1.877974e-01	ci left: 9.762548e-03	ci right 1.180941e-02	k: 430	n:40000
KS ci ratio: 4.388059e-02	ci left: 1.626629e-01	ci right 1.699857e-01	k: 6652	n:40000
PPM1L   40000 perm   7 sec   (5739 perm/sec)   p_kst 1.663000e-01   p_cons 1.075000e-02   p_joint 1.450000e-02

Joint ci ratio: 1.677749e-01	ci left: 9.893343e-03	ci right 1.172412e-02	k: 539	n:50000
Cons ci ratio: 1.705091e-01	ci left: 9.567600e-03	ci right 1.136991e-02	k: 522	n:50000
KS ci ratio: 3.934243e-02	ci left: 1.623909e-01	ci right 1.689279e-01	k: 8282	n:50000
PPM1L   50000 perm   9 sec   (5589 perm/sec)   p_kst 1.656400e-01   p_cons 1.044000e-02   p_joint 1.078000e-02

Joint ci ratio: 1.300492e-01	ci left: 1.394578e-02	ci right 1.590155e-02	k: 894	n:60000
Cons ci ratio: 1.536372e-01	ci left: 9.908188e-03	ci right 1.157298e-02	k: 643	n:60000
KS ci ratio: 3.593323e-02	ci left: 1.625343e-01	ci right 1.684981e-01	k: 9930	n:60000
PPM1L   60000 perm   11 sec   (5430 perm/sec)   p_kst 1.655000e-01   p_cons 1.071667e-02   p_joint 1.490000e-02

Joint ci ratio: 1.167214e-01	ci left: 1.493081e-02	ci right 1.679535e-02	k: 1109	n:70000
Cons ci ratio: 1.429474e-01	ci left: 9.868332e-03	ci right 1.140121e-02	k: 743	n:70000
KS ci ratio: 3.323022e-02	ci left: 1.630659e-01	ci right 1.685904e-01	k: 11607	n:70000
PPM1L   70000 perm   13 sec   (5306 perm/sec)   p_kst 1.658143e-01   p_cons 1.061429e-02   p_joint 1.584286e-02

Joint ci ratio: 1.071238e-01	ci left: 1.557990e-02	ci right 1.735542e-02	k: 1316	n:80000
Cons ci ratio: 1.338972e-01	ci left: 9.889809e-03	ci right 1.132101e-02	k: 847	n:80000
KS ci ratio: 3.119444e-02	ci left: 1.622724e-01	ci right 1.674270e-01	k: 13187	n:80000
PPM1L   80000 perm   15 sec   (5168 perm/sec)   p_kst 1.648375e-01   p_cons 1.058750e-02   p_joint 1.645000e-02

Joint ci ratio: 6.530885e-02	ci left: 3.723047e-02	ci right 3.975494e-02	k: 3463	n:90000
Cons ci ratio: 1.273231e-01	ci left: 9.758236e-03	ci right 1.109582e-02	k: 937	n:90000
KS ci ratio: 2.947884e-02	ci left: 1.617850e-01	ci right 1.666366e-01	k: 14778	n:90000
PPM1L   90000 perm   18 sec   (5064 perm/sec)   p_kst 1.642000e-01   p_cons 1.041111e-02   p_joint 3.847778e-02

Joint ci ratio: 7.823579e-02	ci left: 2.353102e-02	ci right 2.545670e-02	k: 2448	n:100000
Cons ci ratio: 1.209785e-01	ci left: 9.761057e-03	ci right 1.102758e-02	k: 1038	n:100000
KS ci ratio: 2.797844e-02	ci left: 1.617894e-01	ci right 1.663901e-01	k: 16408	n:100000
PPM1L   100000 perm   20 sec   (4952 perm/sec)   p_kst 1.640800e-01   p_cons 1.038000e-02   p_joint 2.448000e-02

Joint ci ratio: 6.060757e-02	ci left: 3.552489e-02	ci right 3.775418e-02	k: 4029	n:110000
Cons ci ratio: 1.149882e-01	ci left: 9.853036e-03	ci right 1.106389e-02	k: 1149	n:110000
KS ci ratio: 2.666483e-02	ci left: 1.620151e-01	ci right 1.664026e-01	k: 18062	n:110000
PPM1L   110000 perm   23 sec   (4864 perm/sec)   p_kst 1.642000e-01   p_cons 1.044545e-02   p_joint 3.662727e-02

Joint ci ratio: 5.757592e-02	ci left: 3.611982e-02	ci right 3.826929e-02	k: 4462	n:120000
Cons ci ratio: 1.094138e-01	ci left: 1.000394e-02	ci right 1.116990e-02	k: 1269	n:120000
KS ci ratio: 2.547558e-02	ci left: 1.626883e-01	ci right 1.668946e-01	k: 19774	n:120000
PPM1L   120000 perm   25 sec   (4778 perm/sec)   p_kst 1.647833e-01   p_cons 1.057500e-02   p_joint 3.718333e-02

Joint ci ratio: 7.937546e-02	ci left: 1.768390e-02	ci right 1.915308e-02	k: 2393	n:130000
Cons ci ratio: 1.054251e-01	ci left: 9.967988e-03	ci right 1.108478e-02	k: 1367	n:130000
KS ci ratio: 2.453508e-02	ci left: 1.621133e-01	ci right 1.661478e-01	k: 21336	n:130000
PPM1L   130000 perm   28 sec   (4693 perm/sec)   p_kst 1.641231e-01   p_cons 1.051538e-02   p_joint 1.840769e-02

Joint ci ratio: 7.670290e-02	ci left: 1.761133e-02	ci right 1.902301e-02	k: 2563	n:140000
Cons ci ratio: 1.019486e-01	ci left: 9.916950e-03	ci right 1.098919e-02	k: 1462	n:140000
KS ci ratio: 2.364956e-02	ci left: 1.621065e-01	ci right 1.659932e-01	k: 22966	n:140000
PPM1L   140000 perm   30 sec   (4602 perm/sec)   p_kst 1.640429e-01   p_cons 1.044286e-02   p_joint 1.830714e-02

Joint ci ratio: 7.402172e-02	ci left: 1.767351e-02	ci right 1.903853e-02	k: 2752	n:150000
Cons ci ratio: 9.850760e-02	ci left: 9.931779e-03	ci right 1.096728e-02	k: 1566	n:150000
KS ci ratio: 2.284571e-02	ci left: 1.621957e-01	ci right 1.659506e-01	k: 24610	n:150000
PPM1L   150000 perm   33 sec   (4521 perm/sec)   p_kst 1.640667e-01   p_cons 1.044000e-02   p_joint 1.834667e-02

Outputting figure to mutsig2_images.part000000000136/PPM1L.4_1099_150000_0.16407_0.01044_0.018347.png
                gene_name: PPM1L
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0099 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 37 percent done.
PPP1R3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.972318e-02	ci left: 3.736565e-01	ci right 3.928116e-01	k: 3832	n:10000
Cons ci ratio: 2.222147e-02	ci left: 7.482674e-01	ci right 7.651828e-01	k: 7568	n:10000
KS ci ratio: 8.296339e-02	ci left: 1.748744e-01	ci right 1.901110e-01	k: 1824	n:10000
PPP1R3C   10000 perm   1 sec   (6873 perm/sec)   p_kst 1.824000e-01   p_cons 7.568000e-01   p_joint 3.832000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R3C.4_962_10000_0.1824_0.7568_0.3832.png
                gene_name: PPP1R3C
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 39 percent done.
PPP2R1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
Cons ci ratio: 2.632864e-02	ci left: 6.799240e-01	ci right 6.981658e-01	k: 6891	n:10000
KS ci ratio: 3.134257e-01	ci left: 1.298624e-02	ci right 1.790194e-02	k: 153	n:10000
PPP2R1A   10000 perm   1 sec   (7311 perm/sec)   p_kst 1.530000e-02   p_cons 6.891000e-01   p_joint 3.010000e-02

Joint ci ratio: 1.509924e-01	ci left: 3.013378e-02	ci right 3.510332e-02	k: 651	n:20000
Cons ci ratio: 1.851571e-02	ci left: 6.849961e-01	ci right 6.978482e-01	k: 13829	n:20000
KS ci ratio: 2.338876e-01	ci left: 1.222918e-02	ci right 1.551439e-02	k: 276	n:20000
PPP2R1A   20000 perm   3 sec   (6484 perm/sec)   p_kst 1.380000e-02   p_cons 6.914500e-01   p_joint 3.255000e-02

Joint ci ratio: 1.151371e-01	ci left: 3.505430e-02	ci right 3.936925e-02	k: 1115	n:30000
Cons ci ratio: 1.516128e-02	ci left: 6.849660e-01	ci right 6.954638e-01	k: 20707	n:30000
KS ci ratio: 1.876765e-01	ci left: 1.298706e-02	ci right 1.570819e-02	k: 429	n:30000
PPP2R1A   30000 perm   5 sec   (6158 perm/sec)   p_kst 1.430000e-02   p_cons 6.902333e-01   p_joint 3.716667e-02

Joint ci ratio: 1.287484e-01	ci left: 2.118995e-02	ci right 2.412991e-02	k: 905	n:40000
Cons ci ratio: 1.327334e-02	ci left: 6.809992e-01	ci right 6.901238e-01	k: 27423	n:40000
KS ci ratio: 1.646337e-01	ci left: 1.282353e-02	ci right 1.514781e-02	k: 558	n:40000
PPP2R1A   40000 perm   7 sec   (5930 perm/sec)   p_kst 1.395000e-02   p_cons 6.855750e-01   p_joint 2.262500e-02

Joint ci ratio: 1.187746e-01	ci left: 2.005230e-02	ci right 2.260369e-02	k: 1065	n:50000
Cons ci ratio: 1.188350e-02	ci left: 6.810683e-01	ci right 6.892302e-01	k: 34258	n:50000
KS ci ratio: 1.465898e-01	ci left: 1.306556e-02	ci right 1.515142e-02	k: 704	n:50000
PPP2R1A   50000 perm   9 sec   (5764 perm/sec)   p_kst 1.408000e-02   p_cons 6.851600e-01   p_joint 2.130000e-02

Joint ci ratio: 1.227359e-01	ci left: 1.568974e-02	ci right 1.775739e-02	k: 1002	n:60000
Cons ci ratio: 1.083120e-02	ci left: 6.821019e-01	ci right 6.895468e-01	k: 41150	n:60000
KS ci ratio: 1.327084e-01	ci left: 1.338136e-02	ci right 1.529937e-02	k: 859	n:60000
PPP2R1A   60000 perm   11 sec   (5610 perm/sec)   p_kst 1.431667e-02   p_cons 6.858333e-01   p_joint 1.670000e-02

Joint ci ratio: 1.116192e-01	ci left: 1.634700e-02	ci right 1.829330e-02	k: 1211	n:70000
Cons ci ratio: 1.003219e-02	ci left: 6.821889e-01	ci right 6.890815e-01	k: 47995	n:70000
KS ci ratio: 1.216602e-01	ci left: 1.372447e-02	ci right 1.551609e-02	k: 1022	n:70000
PPP2R1A   70000 perm   13 sec   (5465 perm/sec)   p_kst 1.460000e-02   p_cons 6.856429e-01   p_joint 1.730000e-02

Joint ci ratio: 1.043775e-01	ci left: 1.641995e-02	ci right 1.824030e-02	k: 1385	n:80000
Cons ci ratio: 9.361804e-03	ci left: 6.834478e-01	ci right 6.898887e-01	k: 54934	n:80000
KS ci ratio: 1.135145e-01	ci left: 1.385312e-02	ci right 1.553234e-02	k: 1174	n:80000
PPP2R1A   80000 perm   15 sec   (5333 perm/sec)   p_kst 1.467500e-02   p_cons 6.866750e-01   p_joint 1.731250e-02

Joint ci ratio: 1.001629e-01	ci left: 1.589452e-02	ci right 1.758128e-02	k: 1505	n:90000
Cons ci ratio: 8.838197e-03	ci left: 6.830566e-01	ci right 6.891314e-01	k: 61749	n:90000
KS ci ratio: 1.081862e-01	ci left: 1.359936e-02	ci right 1.516550e-02	k: 1293	n:90000
PPP2R1A   90000 perm   17 sec   (5214 perm/sec)   p_kst 1.436667e-02   p_cons 6.861000e-01   p_joint 1.672222e-02

Joint ci ratio: 9.623894e-02	ci left: 1.553399e-02	ci right 1.711424e-02	k: 1631	n:100000
Cons ci ratio: 8.392248e-03	ci left: 6.828224e-01	ci right 6.885869e-01	k: 68571	n:100000
KS ci ratio: 1.028443e-01	ci left: 1.358301e-02	ci right 1.506536e-02	k: 1431	n:100000
PPP2R1A   100000 perm   20 sec   (5100 perm/sec)   p_kst 1.431000e-02   p_cons 6.857100e-01   p_joint 1.631000e-02

Joint ci ratio: 9.234242e-02	ci left: 1.537334e-02	ci right 1.687051e-02	k: 1772	n:110000
Cons ci ratio: 7.997835e-03	ci left: 6.831659e-01	ci right 6.886607e-01	k: 75451	n:110000
KS ci ratio: 9.886367e-02	ci left: 1.339380e-02	ci right 1.479563e-02	k: 1549	n:110000
PPP2R1A   110000 perm   22 sec   (4980 perm/sec)   p_kst 1.408182e-02   p_cons 6.859182e-01   p_joint 1.610909e-02

Outputting figure to mutsig2_images.part000000000136/PPP2R1A.4_1830_110000_0.014082_0.68592_0.016109.png
                gene_name: PPP2R1A
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.017 

Current progress: 41 percent done.
PPP2R2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.235768e-02	ci left: 5.850011e-01	ci right 6.043437e-01	k: 5947	n:10000
Cons ci ratio: 2.135169e-02	ci left: 7.628386e-01	ci right 7.794031e-01	k: 7712	n:10000
KS ci ratio: 5.692071e-02	ci left: 3.124482e-01	ci right 3.308558e-01	k: 3216	n:10000
PPP2R2C   10000 perm   2 sec   (6617 perm/sec)   p_kst 3.216000e-01   p_cons 7.712000e-01   p_joint 5.947000e-01

Outputting figure to mutsig2_images.part000000000136/PPP2R2C.4_1454_10000_0.3216_0.7712_0.5947.png
                gene_name: PPP2R2C
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 43 percent done.
PPP3CC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.843343e-02	ci left: 3.860973e-01	ci right 4.053635e-01	k: 3957	n:10000
Cons ci ratio: 2.916180e-02	ci left: 6.342228e-01	ci right 6.530934e-01	k: 6437	n:10000
KS ci ratio: 5.608365e-02	ci left: 3.188987e-01	ci right 3.374015e-01	k: 3281	n:10000
PPP3CC   10000 perm   1 sec   (6840 perm/sec)   p_kst 3.281000e-01   p_cons 6.437000e-01   p_joint 3.957000e-01

Outputting figure to mutsig2_images.part000000000136/PPP3CC.4_1595_10000_0.3281_0.6437_0.3957.png
                gene_name: PPP3CC
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 44 percent done.
PPP4R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.820347e-02	ci left: 5.029509e-01	ci right 5.226417e-01	k: 5128	n:10000
KS ci ratio: 1.400175e-02	ci left: 8.805295e-01	ci right 8.930442e-01	k: 8869	n:10000
PPP4R1   10000 perm   2 sec   (5781 perm/sec)   p_kst 8.869000e-01   p_cons 5.128000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPP4R1.4_2933_10000_0.8869_0.5128_1.png
                gene_name: PPP4R1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
PPWD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.829005e-02	ci left: 6.481042e-01	ci right 6.668040e-01	k: 6575	n:10000
KS ci ratio: 7.746257e-03	ci left: 9.585892e-01	ci right 9.661384e-01	k: 9625	n:10000
PPWD1   10000 perm   2 sec   (6348 perm/sec)   p_kst 9.625000e-01   p_cons 6.575000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPWD1.4_1985_10000_0.9625_0.6575_1.png
                gene_name: PPWD1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
PPYR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.048988e-02	ci left: 1.508034e-01	ci right 1.651964e-01	k: 1579	n:10000
Cons ci ratio: 1.456935e-01	ci left: 6.256264e-02	ci right 7.249110e-02	k: 674	n:10000
KS ci ratio: 4.531823e-02	ci left: 4.181748e-01	ci right 4.376672e-01	k: 4279	n:10000
PPYR1   10000 perm   1 sec   (6723 perm/sec)   p_kst 4.279000e-01   p_cons 6.740000e-02   p_joint 1.579000e-01

Joint ci ratio: 5.893157e-02	ci left: 1.757845e-01	ci right 1.865084e-01	k: 3622	n:20000
Cons ci ratio: 1.047389e-01	ci left: 6.201199e-02	ci right 6.891500e-02	k: 1308	n:20000
KS ci ratio: 3.229436e-02	ci left: 4.172871e-01	ci right 4.310349e-01	k: 8483	n:20000
PPYR1   20000 perm   3 sec   (6057 perm/sec)   p_kst 4.241500e-01   p_cons 6.540000e-02   p_joint 1.811000e-01

Joint ci ratio: 5.077718e-02	ci left: 1.615085e-01	ci right 1.699564e-01	k: 4971	n:30000
Cons ci ratio: 8.607205e-02	ci left: 6.187661e-02	ci right 6.747473e-02	k: 1939	n:30000
KS ci ratio: 2.622650e-02	ci left: 4.211937e-01	ci right 4.324205e-01	k: 12804	n:30000
PPYR1   30000 perm   5 sec   (5749 perm/sec)   p_kst 4.268000e-01   p_cons 6.463333e-02   p_joint 1.657000e-01

Outputting figure to mutsig2_images.part000000000136/PPYR1.4_1132_30000_0.4268_0.064633_0.1657.png
                gene_name: PPYR1
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 50 percent done.
PPOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
Cons ci ratio: 5.133863e-02	ci left: 3.587363e-01	ci right 3.777405e-01	k: 3682	n:10000
KS ci ratio: 8.764072e-02	ci left: 1.593447e-01	ci right 1.740500e-01	k: 1666	n:10000
PPOX   10000 perm   2 sec   (6615 perm/sec)   p_kst 1.666000e-01   p_cons 3.682000e-01   p_joint 2.157000e-01

Outputting figure to mutsig2_images.part000000000136/PPOX.3_1482_10000_0.1666_0.3682_0.2157.png
                gene_name: PPOX
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 52 percent done.
PPP1R12A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.045373e-02	ci left: 2.869643e-01	ci right 3.049547e-01	k: 2959	n:10000
Cons ci ratio: 5.460375e-02	ci left: 3.307132e-01	ci right 3.493801e-01	k: 3400	n:10000
KS ci ratio: 7.302283e-02	ci left: 2.154651e-01	ci right 2.318962e-01	k: 2236	n:10000
PPP1R12A   10000 perm   2 sec   (6314 perm/sec)   p_kst 2.236000e-01   p_cons 3.400000e-01   p_joint 2.959000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R12A.3_3193_10000_0.2236_0.34_0.2959.png
                gene_name: PPP1R12A
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 54 percent done.
PPP1R12C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.654491e-03	ci left: 9.492931e-01	ci right 9.576401e-01	k: 9536	n:10000
Cons ci ratio: 2.822728e-02	ci left: 6.491105e-01	ci right 6.677971e-01	k: 6585	n:10000
KS ci ratio: 4.389437e-02	ci left: 4.338303e-01	ci right 4.534025e-01	k: 4436	n:10000
PPP1R12C   10000 perm   2 sec   (6601 perm/sec)   p_kst 4.436000e-01   p_cons 6.585000e-01   p_joint 9.536000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R12C.3_2437_10000_0.4436_0.6585_0.9536.png
                gene_name: PPP1R12C
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 56 percent done.
PPP2R2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 6.346671e-01	ci left: 2.606439e-03	ci right 5.096391e-03	k: 37	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
PPP2R2B   10000 perm   1 sec   (7098 perm/sec)   p_kst 3.000000e-04   p_cons 3.700000e-03   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 4.780895e-01	ci left: 2.553111e-03	ci right 4.196522e-03	k: 66	n:20000
KS ci ratio: 1.600053e+00	ci left: 8.117914e-05	ci right 5.833193e-04	k: 5	n:20000
PPP2R2B   20000 perm   3 sec   (6273 perm/sec)   p_kst 2.500000e-04   p_cons 3.300000e-03   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 3.855791e-01	ci left: 2.773118e-03	ci right 4.125866e-03	k: 102	n:30000
KS ci ratio: 1.131361e+00	ci left: 1.830524e-04	ci right 6.559730e-04	k: 11	n:30000
PPP2R2B   30000 perm   5 sec   (5959 perm/sec)   p_kst 3.666667e-04   p_cons 3.400000e-03   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 3.295371e-01	ci left: 2.945046e-03	ci right 4.128835e-03	k: 140	n:40000
KS ci ratio: 9.797917e-01	ci left: 2.098994e-04	ci right 6.184302e-04	k: 15	n:40000
PPP2R2B   40000 perm   7 sec   (5718 perm/sec)   p_kst 3.750000e-04   p_cons 3.500000e-03   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 3.019230e-01	ci left: 2.853302e-03	ci right 3.885687e-03	k: 167	n:50000
KS ci ratio: 8.552259e-01	ci left: 2.443470e-04	ci right 6.177003e-04	k: 20	n:50000
PPP2R2B   50000 perm   9 sec   (5498 perm/sec)   p_kst 4.000000e-04   p_cons 3.340000e-03   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.760297e-01	ci left: 2.887968e-03	ci right 3.827751e-03	k: 200	n:60000
KS ci ratio: 8.552573e-01	ci left: 2.036202e-04	ci right 5.147596e-04	k: 20	n:60000
PPP2R2B   60000 perm   11 sec   (5359 perm/sec)   p_kst 3.333333e-04   p_cons 3.333333e-03   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.574893e-01	ci left: 2.875340e-03	ci right 3.738073e-03	k: 230	n:70000
KS ci ratio: 8.000238e-01	ci left: 2.082971e-04	ci right 4.929779e-04	k: 23	n:70000
PPP2R2B   70000 perm   13 sec   (5231 perm/sec)   p_kst 3.285714e-04   p_cons 3.285714e-03   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.399492e-01	ci left: 2.926193e-03	ci right 3.735488e-03	k: 265	n:80000
KS ci ratio: 7.686455e-01	ci left: 2.022434e-04	ci right 4.612773e-04	k: 25	n:80000
PPP2R2B   80000 perm   16 sec   (5104 perm/sec)   p_kst 3.125000e-04   p_cons 3.312500e-03   p_joint 0

Joint ci ratio: 1.600271e+00	ci left: 1.803898e-05	ci right 1.296433e-04	k: 5	n:90000
Cons ci ratio: 2.233431e-01	ci left: 3.030227e-03	ci right 3.802327e-03	k: 306	n:90000
KS ci ratio: 7.155675e-01	ci left: 2.158076e-04	ci right 4.627323e-04	k: 29	n:90000
PPP2R2B   90000 perm   18 sec   (4978 perm/sec)   p_kst 3.222222e-04   p_cons 3.400000e-03   p_joint 5.555556e-05

Joint ci ratio: 1.600277e+00	ci left: 1.623506e-05	ci right 1.166794e-04	k: 5	n:100000
Cons ci ratio: 2.122291e-01	ci left: 3.039214e-03	ci right 3.770057e-03	k: 339	n:100000
KS ci ratio: 6.624817e-01	ci left: 2.354710e-04	ci right 4.750838e-04	k: 34	n:100000
PPP2R2B   100000 perm   20 sec   (4882 perm/sec)   p_kst 3.400000e-04   p_cons 3.390000e-03   p_joint 5.000000e-05

Joint ci ratio: 1.481567e+00	ci left: 2.001748e-05	ci right 1.187187e-04	k: 6	n:110000
Cons ci ratio: 2.012754e-01	ci left: 3.090509e-03	ci right 3.790620e-03	k: 377	n:110000
KS ci ratio: 6.275882e-01	ci left: 2.444754e-04	ci right 4.741328e-04	k: 38	n:110000
PPP2R2B   110000 perm   23 sec   (4799 perm/sec)   p_kst 3.454545e-04   p_cons 3.427273e-03   p_joint 5.454545e-05

Joint ci ratio: 1.481571e+00	ci left: 1.834933e-05	ci right 1.088257e-04	k: 6	n:120000
Cons ci ratio: 1.925576e-01	ci left: 3.110262e-03	ci right 3.780756e-03	k: 412	n:120000
KS ci ratio: 5.976848e-01	ci left: 2.522605e-04	ci right 4.730692e-04	k: 42	n:120000
PPP2R2B   120000 perm   25 sec   (4712 perm/sec)   p_kst 3.500000e-04   p_cons 3.433333e-03   p_joint 5.000000e-05

Joint ci ratio: 1.481575e+00	ci left: 1.693783e-05	ci right 1.004548e-04	k: 6	n:130000
Cons ci ratio: 1.846758e-01	ci left: 3.134865e-03	ci right 3.779904e-03	k: 448	n:130000
KS ci ratio: 5.778680e-01	ci left: 2.524978e-04	ci right 4.631540e-04	k: 45	n:130000
PPP2R2B   130000 perm   28 sec   (4628 perm/sec)   p_kst 3.461538e-04   p_cons 3.446154e-03   p_joint 4.615385e-05

Joint ci ratio: 1.385885e+00	ci left: 2.010282e-05	ci right 1.030164e-04	k: 7	n:140000
Cons ci ratio: 1.755230e-01	ci left: 3.238370e-03	ci right 3.868182e-03	k: 496	n:140000
KS ci ratio: 5.488078e-01	ci left: 2.650896e-04	ci right 4.708216e-04	k: 50	n:140000
PPP2R2B   140000 perm   31 sec   (4546 perm/sec)   p_kst 3.571429e-04   p_cons 3.542857e-03   p_joint 5.000000e-05

Joint ci ratio: 1.385888e+00	ci left: 1.876262e-05	ci right 9.614879e-05	k: 7	n:150000
Cons ci ratio: 1.691733e-01	ci left: 3.264890e-03	ci right 3.874547e-03	k: 534	n:150000
KS ci ratio: 5.237325e-01	ci left: 2.762351e-04	ci right 4.772407e-04	k: 55	n:150000
PPP2R2B   150000 perm   34 sec   (4471 perm/sec)   p_kst 3.666667e-04   p_cons 3.560000e-03   p_joint 4.666667e-05

Joint ci ratio: 2.263185e+00	ci left: 1.513812e-06	ci right 4.515356e-05	k: 2	n:160000
Cons ci ratio: 1.631808e-01	ci left: 3.300445e-03	ci right 3.892768e-03	k: 574	n:160000
KS ci ratio: 5.102448e-01	ci left: 2.752726e-04	ci right 4.685904e-04	k: 58	n:160000
PPP2R2B   160000 perm   36 sec   (4403 perm/sec)   p_kst 3.625000e-04   p_cons 3.587500e-03   p_joint 1.250000e-05

Joint ci ratio: 2.263186e+00	ci left: 1.424764e-06	ci right 4.249751e-05	k: 2	n:170000
Cons ci ratio: 1.580411e-01	ci left: 3.320850e-03	ci right 3.896283e-03	k: 612	n:170000
KS ci ratio: 5.059790e-01	ci left: 2.642074e-04	ci right 4.476581e-04	k: 59	n:170000
PPP2R2B   170000 perm   39 sec   (4334 perm/sec)   p_kst 3.470588e-04   p_cons 3.600000e-03   p_joint 1.176471e-05

Joint ci ratio: 2.263188e+00	ci left: 1.345610e-06	ci right 4.013657e-05	k: 2	n:180000
Cons ci ratio: 1.539529e-01	ci left: 3.312534e-03	ci right 3.870308e-03	k: 645	n:180000
KS ci ratio: 4.899115e-01	ci left: 2.689598e-04	ci right 4.477801e-04	k: 63	n:180000
PPP2R2B   180000 perm   42 sec   (4265 perm/sec)   p_kst 3.500000e-04   p_cons 3.583333e-03   p_joint 1.111111e-05

Joint ci ratio: 2.263189e+00	ci left: 1.274788e-06	ci right 3.802415e-05	k: 2	n:190000
Cons ci ratio: 1.489602e-01	ci left: 3.361001e-03	ci right 3.906948e-03	k: 689	n:190000
KS ci ratio: 4.684421e-01	ci left: 2.825692e-04	ci right 4.595774e-04	k: 69	n:190000
PPP2R2B   190000 perm   45 sec   (4198 perm/sec)   p_kst 3.631579e-04   p_cons 3.626316e-03   p_joint 1.052632e-05

Joint ci ratio: 2.263190e+00	ci left: 1.211049e-06	ci right 3.612297e-05	k: 2	n:200000
Cons ci ratio: 1.458262e-01	ci left: 3.337416e-03	ci right 3.867132e-03	k: 719	n:200000
KS ci ratio: 4.618921e-01	ci left: 2.772680e-04	ci right 4.477634e-04	k: 71	n:200000
PPP2R2B   200000 perm   48 sec   (4128 perm/sec)   p_kst 3.550000e-04   p_cons 3.595000e-03   p_joint 1.000000e-05

Joint ci ratio: 2.263192e+00	ci left: 1.153380e-06	ci right 3.440285e-05	k: 2	n:210000
Cons ci ratio: 1.425011e-01	ci left: 3.334556e-03	ci right 3.850724e-03	k: 753	n:210000
KS ci ratio: 4.495724e-01	ci left: 2.809256e-04	ci right 4.476614e-04	k: 75	n:210000
PPP2R2B   210000 perm   52 sec   (4066 perm/sec)   p_kst 3.571429e-04   p_cons 3.585714e-03   p_joint 9.523810e-06

Joint ci ratio: 2.263192e+00	ci left: 1.100953e-06	ci right 3.283910e-05	k: 2	n:220000
Cons ci ratio: 1.391280e-01	ci left: 3.345243e-03	ci right 3.849793e-03	k: 790	n:220000
KS ci ratio: 4.354744e-01	ci left: 2.883512e-04	ci right 4.525568e-04	k: 80	n:220000
PPP2R2B   220000 perm   55 sec   (4007 perm/sec)   p_kst 3.636364e-04   p_cons 3.590909e-03   p_joint 9.090909e-06

Joint ci ratio: 2.263193e+00	ci left: 1.053086e-06	ci right 3.141133e-05	k: 2	n:230000
Cons ci ratio: 1.359014e-01	ci left: 3.359333e-03	ci right 3.853307e-03	k: 828	n:230000
KS ci ratio: 4.177925e-01	ci left: 3.029822e-04	ci right 4.665628e-04	k: 87	n:230000
PPP2R2B   230000 perm   58 sec   (3948 perm/sec)   p_kst 3.782609e-04   p_cons 3.600000e-03   p_joint 8.695652e-06

Joint ci ratio: 2.263194e+00	ci left: 1.009207e-06	ci right 3.010254e-05	k: 2	n:240000
Cons ci ratio: 1.330433e-01	ci left: 3.364315e-03	ci right 3.847795e-03	k: 864	n:240000
KS ci ratio: 4.086091e-01	ci left: 3.052920e-04	ci right 4.655125e-04	k: 91	n:240000
PPP2R2B   240000 perm   62 sec   (3890 perm/sec)   p_kst 3.791667e-04   p_cons 3.600000e-03   p_joint 8.333333e-06

Joint ci ratio: 1.959980e+00	ci left: 2.474695e-06	ci right 3.506869e-05	k: 3	n:250000
Cons ci ratio: 1.299968e-01	ci left: 3.388350e-03	ci right 3.863273e-03	k: 905	n:250000
KS ci ratio: 4.042403e-01	ci left: 3.002622e-04	ci right 4.557061e-04	k: 93	n:250000
PPP2R2B   250000 perm   65 sec   (3835 perm/sec)   p_kst 3.720000e-04   p_cons 3.620000e-03   p_joint 1.200000e-05

Joint ci ratio: 1.959981e+00	ci left: 2.379514e-06	ci right 3.371991e-05	k: 3	n:260000
Cons ci ratio: 1.280355e-01	ci left: 3.362242e-03	ci right 3.825855e-03	k: 933	n:260000
KS ci ratio: 3.979407e-01	ci left: 2.990880e-04	ci right 4.508756e-04	k: 96	n:260000
PPP2R2B   260000 perm   69 sec   (3782 perm/sec)   p_kst 3.692308e-04   p_cons 3.588462e-03   p_joint 1.153846e-05

Joint ci ratio: 1.959982e+00	ci left: 2.291384e-06	ci right 3.247103e-05	k: 3	n:270000
Cons ci ratio: 1.250562e-01	ci left: 3.399110e-03	ci right 3.856092e-03	k: 978	n:270000
KS ci ratio: 3.939019e-01	ci left: 2.946804e-04	ci right 4.423180e-04	k: 98	n:270000
PPP2R2B   270000 perm   73 sec   (3724 perm/sec)   p_kst 3.629630e-04   p_cons 3.622222e-03   p_joint 1.111111e-05

Joint ci ratio: 1.959983e+00	ci left: 2.209549e-06	ci right 3.131137e-05	k: 3	n:280000
Cons ci ratio: 1.224557e-01	ci left: 3.423072e-03	ci right 3.873012e-03	k: 1020	n:280000
KS ci ratio: 3.899835e-01	ci left: 2.905948e-04	ci right 4.343646e-04	k: 100	n:280000
PPP2R2B   280000 perm   76 sec   (3668 perm/sec)   p_kst 3.571429e-04   p_cons 3.642857e-03   p_joint 1.071429e-05

Joint ci ratio: 1.959983e+00	ci left: 2.133357e-06	ci right 3.023168e-05	k: 3	n:290000
Cons ci ratio: 1.202953e-01	ci left: 3.428748e-03	ci right 3.870918e-03	k: 1057	n:290000
KS ci ratio: 3.806738e-01	ci left: 2.961458e-04	ci right 4.382898e-04	k: 105	n:290000
PPP2R2B   290000 perm   80 sec   (3614 perm/sec)   p_kst 3.620690e-04   p_cons 3.644828e-03   p_joint 1.034483e-05

Joint ci ratio: 1.959984e+00	ci left: 2.062245e-06	ci right 2.922396e-05	k: 3	n:300000
Cons ci ratio: 1.184083e-01	ci left: 3.424406e-03	ci right 3.858603e-03	k: 1091	n:300000
KS ci ratio: 3.771336e-01	ci left: 2.923059e-04	ci right 4.309791e-04	k: 107	n:300000
PPP2R2B   300000 perm   84 sec   (3561 perm/sec)   p_kst 3.566667e-04   p_cons 3.636667e-03   p_joint 1.000000e-05

Joint ci ratio: 1.959984e+00	ci left: 1.995721e-06	ci right 2.828126e-05	k: 3	n:310000
Cons ci ratio: 1.169729e-01	ci left: 3.398471e-03	ci right 3.823795e-03	k: 1118	n:310000
KS ci ratio: 3.736904e-01	ci left: 2.887194e-04	ci right 4.241344e-04	k: 109	n:310000
PPP2R2B   310000 perm   88 sec   (3515 perm/sec)   p_kst 3.516129e-04   p_cons 3.606452e-03   p_joint 9.677419e-06

Joint ci ratio: 1.959985e+00	ci left: 1.933355e-06	ci right 2.739748e-05	k: 3	n:320000
Cons ci ratio: 1.150356e-01	ci left: 3.407574e-03	ci right 3.826495e-03	k: 1156	n:320000
KS ci ratio: 3.670757e-01	ci left: 2.910336e-04	ci right 4.245385e-04	k: 113	n:320000
PPP2R2B   320000 perm   92 sec   (3472 perm/sec)   p_kst 3.531250e-04   p_cons 3.612500e-03   p_joint 9.375000e-06

Joint ci ratio: 1.753061e+00	ci left: 3.302632e-06	ci right 3.103482e-05	k: 4	n:330000
Cons ci ratio: 1.133821e-01	ci left: 3.404401e-03	ci right 3.816513e-03	k: 1190	n:330000
KS ci ratio: 3.592805e-01	ci left: 2.959836e-04	ci right 4.282016e-04	k: 118	n:330000
PPP2R2B   330000 perm   96 sec   (3429 perm/sec)   p_kst 3.575758e-04   p_cons 3.606061e-03   p_joint 1.212121e-05

Joint ci ratio: 1.306647e+00	ci left: 1.015838e-05	ci right 4.636179e-05	k: 8	n:340000
Cons ci ratio: 1.113880e-01	ci left: 3.427189e-03	ci right 3.834284e-03	k: 1233	n:340000
KS ci ratio: 3.519617e-01	ci left: 3.006706e-04	ci right 4.316214e-04	k: 123	n:340000
PPP2R2B   340000 perm   100 sec   (3388 perm/sec)   p_kst 3.617647e-04   p_cons 3.626471e-03   p_joint 2.352941e-05

Joint ci ratio: 1.306648e+00	ci left: 9.868142e-06	ci right 4.503718e-05	k: 8	n:350000
Cons ci ratio: 1.098848e-01	ci left: 3.423724e-03	ci right 3.824564e-03	k: 1267	n:350000
KS ci ratio: 3.464185e-01	ci left: 3.025063e-04	ci right 4.317163e-04	k: 127	n:350000
PPP2R2B   350000 perm   105 sec   (3347 perm/sec)   p_kst 3.628571e-04   p_cons 3.620000e-03   p_joint 2.285714e-05

Joint ci ratio: 1.306649e+00	ci left: 9.594026e-06	ci right 4.378616e-05	k: 8	n:360000
Cons ci ratio: 1.081081e-01	ci left: 3.442108e-03	ci right 3.838170e-03	k: 1309	n:360000
KS ci ratio: 3.411292e-01	ci left: 3.042554e-04	ci right 4.317908e-04	k: 131	n:360000
PPP2R2B   360000 perm   109 sec   (3309 perm/sec)   p_kst 3.638889e-04   p_cons 3.636111e-03   p_joint 2.222222e-05

Joint ci ratio: 1.306649e+00	ci left: 9.334726e-06	ci right 4.260277e-05	k: 8	n:370000
Cons ci ratio: 1.066526e-01	ci left: 3.443762e-03	ci right 3.834345e-03	k: 1345	n:370000
KS ci ratio: 3.348457e-01	ci left: 3.083992e-04	ci right 4.347767e-04	k: 136	n:370000
PPP2R2B   370000 perm   113 sec   (3269 perm/sec)   p_kst 3.675676e-04   p_cons 3.635135e-03   p_joint 2.162162e-05

Joint ci ratio: 1.306649e+00	ci left: 9.089074e-06	ci right 4.148165e-05	k: 8	n:380000
Cons ci ratio: 1.049879e-01	ci left: 3.463302e-03	ci right 3.849591e-03	k: 1388	n:380000
KS ci ratio: 3.324288e-01	ci left: 3.051056e-04	ci right 4.290378e-04	k: 138	n:380000
PPP2R2B   380000 perm   118 sec   (3228 perm/sec)   p_kst 3.631579e-04   p_cons 3.652632e-03   p_joint 2.105263e-05

Joint ci ratio: 1.306650e+00	ci left: 8.856020e-06	ci right 4.041803e-05	k: 8	n:390000
Cons ci ratio: 1.033625e-01	ci left: 3.484382e-03	ci right 3.866640e-03	k: 1432	n:390000
KS ci ratio: 3.300634e-01	ci left: 3.019840e-04	ci right 4.235901e-04	k: 140	n:390000
PPP2R2B   390000 perm   122 sec   (3184 perm/sec)   p_kst 3.589744e-04   p_cons 3.671795e-03   p_joint 2.051282e-05

Joint ci ratio: 1.306650e+00	ci left: 8.634619e-06	ci right 3.940759e-05	k: 8	n:400000
Cons ci ratio: 1.017758e-01	ci left: 3.506889e-03	ci right 3.885357e-03	k: 1477	n:400000
KS ci ratio: 3.254789e-01	ci left: 3.036117e-04	ci right 4.238203e-04	k: 144	n:400000
PPP2R2B   400000 perm   127 sec   (3145 perm/sec)   p_kst 3.600000e-04   p_cons 3.692500e-03   p_joint 2.000000e-05

Joint ci ratio: 2.263202e+00	ci left: 5.907549e-07	ci right 1.762108e-05	k: 2	n:410000
Cons ci ratio: 1.004588e-01	ci left: 3.514072e-03	ci right 3.888118e-03	k: 1516	n:410000
KS ci ratio: 3.424369e-01	ci left: 2.649204e-04	ci right 3.764875e-04	k: 130	n:410000
PPP2R2B   410000 perm   132 sec   (3107 perm/sec)   p_kst 3.170732e-04   p_cons 3.697561e-03   p_joint 4.878049e-06

Joint ci ratio: 2.263202e+00	ci left: 5.766893e-07	ci right 1.720153e-05	k: 2	n:420000
Cons ci ratio: 9.935192e-02	ci left: 3.509333e-03	ci right 3.878519e-03	k: 1550	n:420000
KS ci ratio: 3.373253e-01	ci left: 2.673239e-04	ci right 3.778570e-04	k: 134	n:420000
PPP2R2B   420000 perm   137 sec   (3066 perm/sec)   p_kst 3.190476e-04   p_cons 3.690476e-03   p_joint 4.761905e-06

Joint ci ratio: 9.799806e-01	ci left: 1.952428e-05	ci right 5.753474e-05	k: 15	n:430000
Cons ci ratio: 9.843684e-02	ci left: 3.493493e-03	ci right 3.857432e-03	k: 1579	n:430000
KS ci ratio: 3.336386e-01	ci left: 2.674961e-04	ci right 3.766319e-04	k: 137	n:430000
PPP2R2B   430000 perm   142 sec   (3032 perm/sec)   p_kst 3.186047e-04   p_cons 3.672093e-03   p_joint 3.488372e-05

Joint ci ratio: 9.799811e-01	ci left: 1.908054e-05	ci right 5.622715e-05	k: 15	n:440000
Cons ci ratio: 9.739481e-02	ci left: 3.489475e-03	ci right 3.848928e-03	k: 1613	n:440000
KS ci ratio: 3.300703e-01	ci left: 2.676668e-04	ci right 3.754563e-04	k: 140	n:440000
PPP2R2B   440000 perm   147 sec   (2997 perm/sec)   p_kst 3.181818e-04   p_cons 3.665909e-03   p_joint 3.409091e-05

Joint ci ratio: 1.131590e+00	ci left: 1.220264e-05	ci right 4.373744e-05	k: 11	n:450000
Cons ci ratio: 9.609301e-02	ci left: 3.507345e-03	ci right 3.863537e-03	k: 1657	n:450000
KS ci ratio: 3.277544e-01	ci left: 2.657961e-04	ci right 3.719230e-04	k: 142	n:450000
PPP2R2B   450000 perm   152 sec   (2966 perm/sec)   p_kst 3.155556e-04   p_cons 3.682222e-03   p_joint 2.444444e-05

Joint ci ratio: 1.087196e+00	ci left: 1.347958e-05	ci right 4.556822e-05	k: 12	n:460000
Cons ci ratio: 9.492605e-02	ci left: 3.518100e-03	ci right 3.870805e-03	k: 1698	n:460000
KS ci ratio: 3.243697e-01	ci left: 2.660059e-04	ci right 3.708914e-04	k: 145	n:460000
PPP2R2B   460000 perm   157 sec   (2934 perm/sec)   p_kst 3.152174e-04   p_cons 3.691304e-03   p_joint 2.608696e-05

Joint ci ratio: 1.087196e+00	ci left: 1.319278e-05	ci right 4.459869e-05	k: 12	n:470000
Cons ci ratio: 9.429138e-02	ci left: 3.491023e-03	ci right 3.838544e-03	k: 1721	n:470000
KS ci ratio: 3.232652e-01	ci left: 2.623009e-04	ci right 3.653003e-04	k: 146	n:470000
PPP2R2B   470000 perm   162 sec   (2899 perm/sec)   p_kst 3.106383e-04   p_cons 3.661702e-03   p_joint 2.553191e-05

Joint ci ratio: 1.087197e+00	ci left: 1.291793e-05	ci right 4.366956e-05	k: 12	n:480000
Cons ci ratio: 9.313509e-02	ci left: 3.505779e-03	ci right 3.850255e-03	k: 1764	n:480000
KS ci ratio: 3.232663e-01	ci left: 2.568362e-04	ci right 3.576901e-04	k: 146	n:480000
PPP2R2B   480000 perm   167 sec   (2866 perm/sec)   p_kst 3.041667e-04   p_cons 3.675000e-03   p_joint 2.500000e-05

Joint ci ratio: 1.600322e+00	ci left: 3.313246e-06	ci right 2.381276e-05	k: 5	n:490000
Cons ci ratio: 9.243172e-02	ci left: 3.488054e-03	ci right 3.828060e-03	k: 1791	n:490000
KS ci ratio: 3.168634e-01	ci left: 2.628561e-04	ci right 3.636153e-04	k: 152	n:490000
PPP2R2B   490000 perm   173 sec   (2836 perm/sec)   p_kst 3.102041e-04   p_cons 3.655102e-03   p_joint 1.020408e-05

Joint ci ratio: 1.600322e+00	ci left: 3.246980e-06	ci right 2.333651e-05	k: 5	n:500000
Cons ci ratio: 9.171874e-02	ci left: 3.473002e-03	ci right 3.808790e-03	k: 1819	n:500000
KS ci ratio: 3.148129e-01	ci left: 2.612819e-04	ci right 3.606590e-04	k: 154	n:500000
PPP2R2B   500000 perm   178 sec   (2804 perm/sec)   p_kst 3.080000e-04   p_cons 3.638000e-03   p_joint 1.000000e-05

Joint ci ratio: 1.600322e+00	ci left: 3.183314e-06	ci right 2.287893e-05	k: 5	n:510000
Cons ci ratio: 9.062908e-02	ci left: 3.489213e-03	ci right 3.822347e-03	k: 1863	n:510000
KS ci ratio: 3.108275e-01	ci left: 2.633863e-04	ci right 3.620441e-04	k: 158	n:510000
PPP2R2B   510000 perm   184 sec   (2775 perm/sec)   p_kst 3.098039e-04   p_cons 3.652941e-03   p_joint 9.803922e-06

Joint ci ratio: 1.600323e+00	ci left: 3.122096e-06	ci right 2.243896e-05	k: 5	n:520000
Cons ci ratio: 8.993286e-02	ci left: 3.476622e-03	ci right 3.805870e-03	k: 1892	n:520000
KS ci ratio: 3.098552e-01	ci left: 2.600944e-04	ci right 3.571542e-04	k: 159	n:520000
PPP2R2B   520000 perm   189 sec   (2748 perm/sec)   p_kst 3.057692e-04   p_cons 3.638462e-03   p_joint 9.615385e-06

Joint ci ratio: 1.600323e+00	ci left: 3.063189e-06	ci right 2.201558e-05	k: 5	n:530000
Cons ci ratio: 8.925243e-02	ci left: 3.464515e-03	ci right 3.790005e-03	k: 1921	n:530000
KS ci ratio: 3.060529e-01	ci left: 2.621511e-04	ci right 3.585439e-04	k: 163	n:530000
PPP2R2B   530000 perm   195 sec   (2717 perm/sec)   p_kst 3.075472e-04   p_cons 3.624528e-03   p_joint 9.433962e-06

Joint ci ratio: 1.600323e+00	ci left: 3.006463e-06	ci right 2.160789e-05	k: 5	n:540000
Cons ci ratio: 8.831505e-02	ci left: 3.474598e-03	ci right 3.797430e-03	k: 1962	n:540000
KS ci ratio: 3.042040e-01	ci left: 2.607166e-04	ci right 3.558906e-04	k: 165	n:540000
PPP2R2B   540000 perm   201 sec   (2692 perm/sec)   p_kst 3.055556e-04   p_cons 3.633333e-03   p_joint 9.259259e-06

Joint ci ratio: 1.600323e+00	ci left: 2.951800e-06	ci right 2.121502e-05	k: 5	n:550000
Cons ci ratio: 8.740659e-02	ci left: 3.484332e-03	ci right 3.804568e-03	k: 2003	n:550000
KS ci ratio: 3.023881e-01	ci left: 2.593359e-04	ci right 3.533322e-04	k: 167	n:550000
PPP2R2B   550000 perm   207 sec   (2663 perm/sec)   p_kst 3.036364e-04   p_cons 3.641818e-03   p_joint 9.090909e-06

Joint ci ratio: 1.600323e+00	ci left: 2.899089e-06	ci right 2.083618e-05	k: 5	n:560000
Cons ci ratio: 8.676010e-02	ci left: 3.474516e-03	ci right 3.791368e-03	k: 2033	n:560000
KS ci ratio: 3.006044e-01	ci left: 2.580062e-04	ci right 3.508635e-04	k: 169	n:560000
PPP2R2B   560000 perm   213 sec   (2634 perm/sec)   p_kst 3.017857e-04   p_cons 3.630357e-03   p_joint 8.928571e-06

Joint ci ratio: 1.600323e+00	ci left: 2.848228e-06	ci right 2.047064e-05	k: 5	n:570000
Cons ci ratio: 8.612775e-02	ci left: 3.465052e-03	ci right 3.778623e-03	k: 2063	n:570000
KS ci ratio: 2.971288e-01	ci left: 2.599712e-04	ci right 3.522501e-04	k: 173	n:570000
PPP2R2B   570000 perm   219 sec   (2605 perm/sec)   p_kst 3.035088e-04   p_cons 3.619298e-03   p_joint 8.771930e-06

Joint ci ratio: 1.600324e+00	ci left: 2.799120e-06	ci right 2.011770e-05	k: 5	n:580000
Cons ci ratio: 8.542718e-02	ci left: 3.462673e-03	ci right 3.773352e-03	k: 2097	n:580000
KS ci ratio: 2.962792e-01	ci left: 2.570847e-04	ci right 3.480290e-04	k: 174	n:580000
PPP2R2B   580000 perm   225 sec   (2578 perm/sec)   p_kst 3.000000e-04   p_cons 3.615517e-03   p_joint 8.620690e-06

Joint ci ratio: 1.600324e+00	ci left: 2.751677e-06	ci right 1.977672e-05	k: 5	n:590000
Cons ci ratio: 8.466375e-02	ci left: 3.467021e-03	ci right 3.775173e-03	k: 2135	n:590000
KS ci ratio: 2.946008e-01	ci left: 2.558660e-04	ci right 3.457706e-04	k: 176	n:590000
PPP2R2B   590000 perm   231 sec   (2555 perm/sec)   p_kst 2.983051e-04   p_cons 3.618644e-03   p_joint 8.474576e-06

Joint ci ratio: 1.600324e+00	ci left: 2.705816e-06	ci right 1.944711e-05	k: 5	n:600000
Cons ci ratio: 8.411481e-02	ci left: 3.454918e-03	ci right 3.759906e-03	k: 2163	n:600000
KS ci ratio: 2.913271e-01	ci left: 2.577784e-04	ci right 3.471629e-04	k: 180	n:600000
PPP2R2B   600000 perm   237 sec   (2529 perm/sec)   p_kst 3.000000e-04   p_cons 3.605000e-03   p_joint 8.333333e-06

Joint ci ratio: 1.600324e+00	ci left: 2.661458e-06	ci right 1.912831e-05	k: 5	n:610000
Cons ci ratio: 8.340475e-02	ci left: 3.457666e-03	ci right 3.760194e-03	k: 2200	n:610000
KS ci ratio: 2.889424e-01	ci left: 2.581127e-04	ci right 3.467466e-04	k: 183	n:610000
PPP2R2B   610000 perm   244 sec   (2505 perm/sec)   p_kst 3.000000e-04   p_cons 3.606557e-03   p_joint 8.196721e-06

Joint ci ratio: 1.600324e+00	ci left: 2.618531e-06	ci right 1.881979e-05	k: 5	n:620000
Cons ci ratio: 8.280525e-02	ci left: 3.452437e-03	ci right 3.752231e-03	k: 2232	n:620000
KS ci ratio: 2.866153e-01	ci left: 2.584391e-04	ci right 3.463409e-04	k: 186	n:620000
PPP2R2B   620000 perm   250 sec   (2483 perm/sec)   p_kst 3.000000e-04   p_cons 3.600000e-03   p_joint 8.064516e-06

Joint ci ratio: 1.481611e+00	ci left: 3.495078e-06	ci right 2.072921e-05	k: 6	n:630000
Cons ci ratio: 8.203694e-02	ci left: 3.462929e-03	ci right 3.760711e-03	k: 2274	n:630000
KS ci ratio: 2.821243e-01	ci left: 2.631817e-04	ci right 3.510445e-04	k: 192	n:630000
PPP2R2B   630000 perm   256 sec   (2460 perm/sec)   p_kst 3.047619e-04   p_cons 3.609524e-03   p_joint 9.523810e-06

Joint ci ratio: 1.753069e+00	ci left: 1.702917e-06	ci right 1.600240e-05	k: 4	n:640000
Cons ci ratio: 8.157279e-02	ci left: 3.448614e-03	ci right 3.743407e-03	k: 2300	n:640000
KS ci ratio: 2.792452e-01	ci left: 2.648796e-04	ci right 3.522481e-04	k: 196	n:640000
PPP2R2B   640000 perm   263 sec   (2438 perm/sec)   p_kst 3.062500e-04   p_cons 3.593750e-03   p_joint 6.250000e-06

Joint ci ratio: 1.753069e+00	ci left: 1.676718e-06	ci right 1.575621e-05	k: 4	n:650000
Cons ci ratio: 8.101167e-02	ci left: 3.443788e-03	ci right 3.736048e-03	k: 2332	n:650000
KS ci ratio: 2.757672e-01	ci left: 2.679617e-04	ci right 3.550550e-04	k: 201	n:650000
PPP2R2B   650000 perm   269 sec   (2414 perm/sec)   p_kst 3.092308e-04   p_cons 3.587692e-03   p_joint 6.153846e-06

Joint ci ratio: 1.753069e+00	ci left: 1.651314e-06	ci right 1.551749e-05	k: 4	n:660000
Cons ci ratio: 8.049614e-02	ci left: 3.436146e-03	ci right 3.725814e-03	k: 2362	n:660000
KS ci ratio: 2.744123e-01	ci left: 2.667230e-04	ci right 3.529142e-04	k: 203	n:660000
PPP2R2B   660000 perm   276 sec   (2393 perm/sec)   p_kst 3.075758e-04   p_cons 3.578788e-03   p_joint 6.060606e-06

Joint ci ratio: 1.753069e+00	ci left: 1.626667e-06	ci right 1.528588e-05	k: 4	n:670000
Cons ci ratio: 7.972328e-02	ci left: 3.452142e-03	ci right 3.740236e-03	k: 2408	n:670000
KS ci ratio: 2.744129e-01	ci left: 2.627419e-04	ci right 3.476470e-04	k: 203	n:670000
PPP2R2B   670000 perm   283 sec   (2371 perm/sec)   p_kst 3.029851e-04   p_cons 3.594030e-03   p_joint 5.970149e-06

Joint ci ratio: 1.753070e+00	ci left: 1.602745e-06	ci right 1.506109e-05	k: 4	n:680000
Cons ci ratio: 7.928076e-02	ci left: 3.440291e-03	ci right 3.725728e-03	k: 2435	n:680000
KS ci ratio: 2.737432e-01	ci left: 2.602476e-04	ci right 3.441060e-04	k: 204	n:680000
PPP2R2B   680000 perm   289 sec   (2350 perm/sec)   p_kst 3.000000e-04   p_cons 3.580882e-03   p_joint 5.882353e-06

Joint ci ratio: 1.753070e+00	ci left: 1.579517e-06	ci right 1.484282e-05	k: 4	n:690000
Cons ci ratio: 7.876533e-02	ci left: 3.435892e-03	ci right 3.719026e-03	k: 2467	n:690000
KS ci ratio: 2.737438e-01	ci left: 2.564758e-04	ci right 3.391191e-04	k: 204	n:690000
PPP2R2B   690000 perm   296 sec   (2329 perm/sec)   p_kst 2.956522e-04   p_cons 3.575362e-03   p_joint 5.797101e-06

Joint ci ratio: 1.753070e+00	ci left: 1.556953e-06	ci right 1.463078e-05	k: 4	n:700000
Cons ci ratio: 7.808760e-02	ci left: 3.447032e-03	ci right 3.728529e-03	k: 2510	n:700000
KS ci ratio: 2.724184e-01	ci left: 2.554734e-04	ci right 3.373268e-04	k: 206	n:700000
PPP2R2B   700000 perm   303 sec   (2310 perm/sec)   p_kst 2.942857e-04   p_cons 3.585714e-03   p_joint 5.714286e-06

Joint ci ratio: 1.600325e+00	ci left: 2.286604e-06	ci right 1.643419e-05	k: 5	n:710000
Cons ci ratio: 7.757964e-02	ci left: 3.444057e-03	ci right 3.723398e-03	k: 2543	n:710000
KS ci ratio: 2.698236e-01	ci left: 2.571261e-04	ci right 3.385915e-04	k: 210	n:710000
PPP2R2B   710000 perm   310 sec   (2293 perm/sec)   p_kst 2.957746e-04   p_cons 3.581690e-03   p_joint 7.042254e-06

Joint ci ratio: 1.600326e+00	ci left: 2.254846e-06	ci right 1.620594e-05	k: 5	n:720000
Cons ci ratio: 7.694673e-02	ci left: 3.453429e-03	ci right 3.731144e-03	k: 2585	n:720000
KS ci ratio: 2.673017e-01	ci left: 2.587364e-04	ci right 3.398175e-04	k: 214	n:720000
PPP2R2B   720000 perm   317 sec   (2272 perm/sec)   p_kst 2.972222e-04   p_cons 3.590278e-03   p_joint 6.944444e-06

Joint ci ratio: 1.600326e+00	ci left: 2.223958e-06	ci right 1.598394e-05	k: 5	n:730000
Cons ci ratio: 7.643129e-02	ci left: 3.453148e-03	ci right 3.728897e-03	k: 2620	n:730000
KS ci ratio: 2.666826e-01	ci left: 2.564702e-04	ci right 3.366239e-04	k: 215	n:730000
PPP2R2B   730000 perm   324 sec   (2253 perm/sec)   p_kst 2.945205e-04   p_cons 3.589041e-03   p_joint 6.849315e-06

Joint ci ratio: 1.600326e+00	ci left: 2.193904e-06	ci right 1.576795e-05	k: 5	n:740000
Cons ci ratio: 7.591174e-02	ci left: 3.454206e-03	ci right 3.728081e-03	k: 2656	n:740000
KS ci ratio: 2.666831e-01	ci left: 2.530044e-04	ci right 3.320750e-04	k: 215	n:740000
PPP2R2B   740000 perm   331 sec   (2234 perm/sec)   p_kst 2.905405e-04   p_cons 3.589189e-03   p_joint 6.756757e-06

Joint ci ratio: 1.600326e+00	ci left: 2.164652e-06	ci right 1.555771e-05	k: 5	n:750000
Cons ci ratio: 7.524855e-02	ci left: 3.469633e-03	ci right 3.742223e-03	k: 2703	n:750000
KS ci ratio: 2.660683e-01	ci left: 2.508752e-04	ci right 3.290696e-04	k: 216	n:750000
PPP2R2B   750000 perm   339 sec   (2215 perm/sec)   p_kst 2.880000e-04   p_cons 3.604000e-03   p_joint 6.666667e-06

Joint ci ratio: 1.600326e+00	ci left: 2.136170e-06	ci right 1.535300e-05	k: 5	n:760000
Cons ci ratio: 7.458884e-02	ci left: 3.485956e-03	ci right 3.757323e-03	k: 2751	n:760000
KS ci ratio: 2.642479e-01	ci left: 2.512593e-04	ci right 3.289488e-04	k: 219	n:760000
PPP2R2B   760000 perm   346 sec   (2197 perm/sec)   p_kst 2.881579e-04   p_cons 3.619737e-03   p_joint 6.578947e-06

Joint ci ratio: 1.600326e+00	ci left: 2.108427e-06	ci right 1.515361e-05	k: 5	n:770000
Cons ci ratio: 7.415913e-02	ci left: 3.481469e-03	ci right 3.750858e-03	k: 2783	n:770000
KS ci ratio: 2.624644e-01	ci left: 2.516351e-04	ci right 3.288295e-04	k: 222	n:770000
PPP2R2B   770000 perm   353 sec   (2179 perm/sec)   p_kst 2.883117e-04   p_cons 3.614286e-03   p_joint 6.493506e-06

Joint ci ratio: 1.600326e+00	ci left: 2.081396e-06	ci right 1.495934e-05	k: 5	n:780000
Cons ci ratio: 7.361879e-02	ci left: 3.488428e-03	ci right 3.756305e-03	k: 2824	n:780000
KS ci ratio: 2.618782e-01	ci left: 2.496067e-04	ci right 3.259799e-04	k: 223	n:780000
PPP2R2B   780000 perm   361 sec   (2161 perm/sec)   p_kst 2.858974e-04   p_cons 3.620513e-03   p_joint 6.410256e-06

Joint ci ratio: 1.600326e+00	ci left: 2.055049e-06	ci right 1.476998e-05	k: 5	n:790000
Cons ci ratio: 7.321840e-02	ci left: 3.482790e-03	ci right 3.748718e-03	k: 2855	n:790000
KS ci ratio: 2.601420e-01	ci left: 2.499962e-04	ci right 3.258989e-04	k: 226	n:790000
PPP2R2B   790000 perm   368 sec   (2145 perm/sec)   p_kst 2.860759e-04   p_cons 3.613924e-03   p_joint 6.329114e-06

Joint ci ratio: 1.600326e+00	ci left: 2.029361e-06	ci right 1.458535e-05	k: 5	n:800000
Cons ci ratio: 7.287516e-02	ci left: 3.472388e-03	ci right 3.736226e-03	k: 2882	n:800000
KS ci ratio: 2.567702e-01	ci left: 2.538855e-04	ci right 3.298099e-04	k: 232	n:800000
PPP2R2B   800000 perm   376 sec   (2127 perm/sec)   p_kst 2.900000e-04   p_cons 3.602500e-03   p_joint 6.250000e-06

Joint ci ratio: 1.481613e+00	ci left: 2.718393e-06	ci right 1.612274e-05	k: 6	n:810000
Cons ci ratio: 7.233739e-02	ci left: 3.481642e-03	ci right 3.744149e-03	k: 2925	n:810000
KS ci ratio: 2.551329e-01	ci left: 2.542172e-04	ci right 3.296789e-04	k: 235	n:810000
PPP2R2B   810000 perm   384 sec   (2111 perm/sec)   p_kst 2.901235e-04   p_cons 3.611111e-03   p_joint 7.407407e-06

Joint ci ratio: 1.481614e+00	ci left: 2.685241e-06	ci right 1.592612e-05	k: 6	n:820000
Cons ci ratio: 7.199410e-02	ci left: 3.472713e-03	ci right 3.733252e-03	k: 2953	n:820000
KS ci ratio: 2.545944e-01	ci left: 2.522586e-04	ci right 3.269558e-04	k: 236	n:820000
PPP2R2B   820000 perm   392 sec   (2094 perm/sec)   p_kst 2.878049e-04   p_cons 3.601220e-03   p_joint 7.317073e-06

Joint ci ratio: 1.481614e+00	ci left: 2.652889e-06	ci right 1.573424e-05	k: 6	n:830000
Cons ci ratio: 7.151139e-02	ci left: 3.478201e-03	ci right 3.737330e-03	k: 2993	n:830000
KS ci ratio: 2.529982e-01	ci left: 2.526039e-04	ci right 3.268604e-04	k: 239	n:830000
PPP2R2B   830000 perm   399 sec   (2078 perm/sec)   p_kst 2.879518e-04   p_cons 3.606024e-03   p_joint 7.228916e-06

Joint ci ratio: 1.481614e+00	ci left: 2.621307e-06	ci right 1.554693e-05	k: 6	n:840000
Cons ci ratio: 7.100303e-02	ci left: 3.487073e-03	ci right 3.744940e-03	k: 3036	n:840000
KS ci ratio: 2.524730e-01	ci left: 2.507118e-04	ci right 3.242350e-04	k: 240	n:840000
PPP2R2B   840000 perm   407 sec   (2062 perm/sec)   p_kst 2.857143e-04   p_cons 3.614286e-03   p_joint 7.142857e-06

Joint ci ratio: 1.481614e+00	ci left: 2.590468e-06	ci right 1.536402e-05	k: 6	n:850000
Cons ci ratio: 7.058592e-02	ci left: 3.487652e-03	ci right 3.743984e-03	k: 3072	n:850000
KS ci ratio: 2.524734e-01	ci left: 2.477622e-04	ci right 3.204205e-04	k: 240	n:850000
PPP2R2B   850000 perm   416 sec   (2045 perm/sec)   p_kst 2.823529e-04   p_cons 3.614118e-03   p_joint 7.058824e-06

Joint ci ratio: 1.481614e+00	ci left: 2.560346e-06	ci right 1.518537e-05	k: 6	n:860000
Cons ci ratio: 7.027823e-02	ci left: 3.477940e-03	ci right 3.732399e-03	k: 3099	n:860000
KS ci ratio: 2.514324e-01	ci left: 2.470599e-04	ci right 3.191668e-04	k: 242	n:860000
PPP2R2B   860000 perm   424 sec   (2030 perm/sec)   p_kst 2.813953e-04   p_cons 3.603488e-03   p_joint 6.976744e-06

Joint ci ratio: 1.481614e+00	ci left: 2.530917e-06	ci right 1.501083e-05	k: 6	n:870000
Cons ci ratio: 6.984017e-02	ci left: 3.482006e-03	ci right 3.735110e-03	k: 3138	n:870000
KS ci ratio: 2.504042e-01	ci left: 2.463745e-04	ci right 3.179414e-04	k: 244	n:870000
PPP2R2B   870000 perm   432 sec   (2015 perm/sec)   p_kst 2.804598e-04   p_cons 3.606897e-03   p_joint 6.896552e-06

Joint ci ratio: 1.481614e+00	ci left: 2.502157e-06	ci right 1.484025e-05	k: 6	n:880000
Cons ci ratio: 6.949804e-02	ci left: 3.477051e-03	ci right 3.728507e-03	k: 3169	n:880000
KS ci ratio: 2.473928e-01	ci left: 2.499678e-04	ci right 3.215709e-04	k: 250	n:880000
PPP2R2B   880000 perm   440 sec   (1999 perm/sec)   p_kst 2.840909e-04   p_cons 3.601136e-03   p_joint 6.818182e-06

Joint ci ratio: 1.481614e+00	ci left: 2.474042e-06	ci right 1.467351e-05	k: 6	n:890000
Cons ci ratio: 6.902037e-02	ci left: 3.486566e-03	ci right 3.736907e-03	k: 3213	n:890000
KS ci ratio: 2.464131e-01	ci left: 2.492673e-04	ci right 3.203437e-04	k: 252	n:890000
PPP2R2B   890000 perm   449 sec   (1984 perm/sec)   p_kst 2.831461e-04   p_cons 3.610112e-03   p_joint 6.741573e-06

Joint ci ratio: 1.481614e+00	ci left: 2.446553e-06	ci right 1.451047e-05	k: 6	n:900000
Cons ci ratio: 6.867948e-02	ci left: 3.482769e-03	ci right 3.731554e-03	k: 3245	n:900000
KS ci ratio: 2.444878e-01	ci left: 2.506688e-04	ci right 3.215016e-04	k: 256	n:900000
PPP2R2B   900000 perm   457 sec   (1970 perm/sec)   p_kst 2.844444e-04   p_cons 3.605556e-03   p_joint 6.666667e-06

Joint ci ratio: 1.481614e+00	ci left: 2.419668e-06	ci right 1.435101e-05	k: 6	n:910000
Cons ci ratio: 6.821838e-02	ci left: 3.492022e-03	ci right 3.739726e-03	k: 3289	n:910000
KS ci ratio: 2.435421e-01	ci left: 2.499776e-04	ci right 3.203005e-04	k: 258	n:910000
PPP2R2B   910000 perm   465 sec   (1955 perm/sec)   p_kst 2.835165e-04   p_cons 3.614286e-03   p_joint 6.593407e-06

Joint ci ratio: 1.481614e+00	ci left: 2.393367e-06	ci right 1.419503e-05	k: 6	n:920000
Cons ci ratio: 6.778685e-02	ci left: 3.498941e-03	ci right 3.745505e-03	k: 3331	n:920000
KS ci ratio: 2.421438e-01	ci left: 2.503229e-04	ci right 3.202779e-04	k: 261	n:920000
PPP2R2B   920000 perm   474 sec   (1941 perm/sec)   p_kst 2.836957e-04   p_cons 3.620652e-03   p_joint 6.521739e-06

Joint ci ratio: 1.481614e+00	ci left: 2.367632e-06	ci right 1.404239e-05	k: 6	n:930000
Cons ci ratio: 6.745376e-02	ci left: 3.496202e-03	ci right 3.741314e-03	k: 3364	n:930000
KS ci ratio: 2.412249e-01	ci left: 2.496515e-04	ci right 3.191146e-04	k: 263	n:930000
PPP2R2B   930000 perm   483 sec   (1927 perm/sec)   p_kst 2.827957e-04   p_cons 3.617204e-03   p_joint 6.451613e-06

Joint ci ratio: 1.481614e+00	ci left: 2.342444e-06	ci right 1.389301e-05	k: 6	n:940000
Cons ci ratio: 6.706614e-02	ci left: 3.499800e-03	ci right 3.743700e-03	k: 3403	n:940000
KS ci ratio: 2.407696e-01	ci left: 2.479952e-04	ci right 3.168477e-04	k: 264	n:940000
PPP2R2B   940000 perm   491 sec   (1913 perm/sec)   p_kst 2.808511e-04   p_cons 3.620213e-03   p_joint 6.382979e-06

Joint ci ratio: 1.481614e+00	ci left: 2.317787e-06	ci right 1.374676e-05	k: 6	n:950000
Cons ci ratio: 6.672403e-02	ci left: 3.499186e-03	ci right 3.741751e-03	k: 3438	n:950000
KS ci ratio: 2.394182e-01	ci left: 2.483527e-04	ci right 3.168600e-04	k: 267	n:950000
PPP2R2B   950000 perm   500 sec   (1900 perm/sec)   p_kst 2.810526e-04   p_cons 3.618947e-03   p_joint 6.315789e-06

Joint ci ratio: 1.481615e+00	ci left: 2.293643e-06	ci right 1.360357e-05	k: 6	n:960000
Cons ci ratio: 6.645433e-02	ci left: 3.491416e-03	ci right 3.732427e-03	k: 3466	n:960000
KS ci ratio: 2.389730e-01	ci left: 2.467449e-04	ci right 3.146634e-04	k: 268	n:960000
PPP2R2B   960000 perm   509 sec   (1886 perm/sec)   p_kst 2.791667e-04   p_cons 3.610417e-03   p_joint 6.250000e-06

Joint ci ratio: 1.481615e+00	ci left: 2.269997e-06	ci right 1.346333e-05	k: 6	n:970000
Cons ci ratio: 6.604578e-02	ci left: 3.499018e-03	ci right 3.739012e-03	k: 3509	n:970000
KS ci ratio: 2.372157e-01	ci left: 2.480789e-04	ci right 3.157887e-04	k: 272	n:970000
PPP2R2B   970000 perm   518 sec   (1873 perm/sec)   p_kst 2.804124e-04   p_cons 3.617526e-03   p_joint 6.185567e-06

Joint ci ratio: 1.481615e+00	ci left: 2.246834e-06	ci right 1.332595e-05	k: 6	n:980000
Cons ci ratio: 6.567251e-02	ci left: 3.503459e-03	ci right 3.742347e-03	k: 3549	n:980000
KS ci ratio: 2.363516e-01	ci left: 2.474672e-04	ci right 3.147280e-04	k: 274	n:980000
PPP2R2B   980000 perm   527 sec   (1861 perm/sec)   p_kst 2.795918e-04   p_cons 3.621429e-03   p_joint 6.122449e-06

Joint ci ratio: 1.481615e+00	ci left: 2.224139e-06	ci right 1.319134e-05	k: 6	n:990000
Cons ci ratio: 6.531463e-02	ci left: 3.506819e-03	ci right 3.744584e-03	k: 3588	n:990000
KS ci ratio: 2.350728e-01	ci left: 2.478189e-04	ci right 3.147579e-04	k: 277	n:990000
PPP2R2B   990000 perm   536 sec   (1848 perm/sec)   p_kst 2.797980e-04   p_cons 3.624242e-03   p_joint 6.060606e-06

Joint ci ratio: 1.481615e+00	ci left: 2.201897e-06	ci right 1.305943e-05	k: 6	n:1000000
Cons ci ratio: 6.493560e-02	ci left: 3.513067e-03	ci right 3.749822e-03	k: 3630	n:1000000
KS ci ratio: 2.342319e-01	ci left: 2.472231e-04	ci right 3.137277e-04	k: 279	n:1000000
PPP2R2B   1000000 perm   545 sec   (1833 perm/sec)   p_kst 2.790000e-04   p_cons 3.630000e-03   p_joint 6.000000e-06

Joint ci ratio: 1.481615e+00	ci left: 2.180096e-06	ci right 1.293013e-05	k: 6	n:1010000
Cons ci ratio: 6.460723e-02	ci left: 3.514325e-03	ci right 3.749922e-03	k: 3667	n:1010000
KS ci ratio: 2.305551e-01	ci left: 2.531676e-04	ci right 3.200501e-04	k: 288	n:1010000
PPP2R2B   1010000 perm   555 sec   (1820 perm/sec)   p_kst 2.851485e-04   p_cons 3.630693e-03   p_joint 5.940594e-06

Joint ci ratio: 1.481615e+00	ci left: 2.158723e-06	ci right 1.280336e-05	k: 6	n:1020000
Cons ci ratio: 6.428380e-02	ci left: 3.515561e-03	ci right 3.750017e-03	k: 3704	n:1020000
KS ci ratio: 2.285860e-01	ci left: 2.553057e-04	ci right 3.220956e-04	k: 293	n:1020000
PPP2R2B   1020000 perm   564 sec   (1809 perm/sec)   p_kst 2.872549e-04   p_cons 3.631373e-03   p_joint 5.882353e-06

Joint ci ratio: 1.481615e+00	ci left: 2.137764e-06	ci right 1.267906e-05	k: 6	n:1030000
Cons ci ratio: 6.393090e-02	ci left: 3.520597e-03	ci right 3.754052e-03	k: 3745	n:1030000
KS ci ratio: 2.274286e-01	ci left: 2.555733e-04	ci right 3.220472e-04	k: 296	n:1030000
PPP2R2B   1030000 perm   573 sec   (1796 perm/sec)   p_kst 2.873786e-04   p_cons 3.635922e-03   p_joint 5.825243e-06

Joint ci ratio: 1.481615e+00	ci left: 2.117209e-06	ci right 1.255714e-05	k: 6	n:1040000
Cons ci ratio: 6.360903e-02	ci left: 3.522701e-03	ci right 3.755077e-03	k: 3783	n:1040000
KS ci ratio: 2.266668e-01	ci left: 2.549295e-04	ci right 3.209829e-04	k: 298	n:1040000
PPP2R2B   1040000 perm   583 sec   (1785 perm/sec)   p_kst 2.865385e-04   p_cons 3.637500e-03   p_joint 5.769231e-06

Joint ci ratio: 1.481615e+00	ci left: 2.097045e-06	ci right 1.243755e-05	k: 6	n:1050000
Cons ci ratio: 6.335856e-02	ci left: 3.517269e-03	ci right 3.748339e-03	k: 3813	n:1050000
KS ci ratio: 2.255381e-01	ci left: 2.551970e-04	ci right 3.209446e-04	k: 301	n:1050000
PPP2R2B   1050000 perm   592 sec   (1773 perm/sec)   p_kst 2.866667e-04   p_cons 3.631429e-03   p_joint 5.714286e-06

Joint ci ratio: 1.481615e+00	ci left: 2.077261e-06	ci right 1.232022e-05	k: 6	n:1060000
Cons ci ratio: 6.308633e-02	ci left: 3.514727e-03	ci right 3.744602e-03	k: 3846	n:1060000
KS ci ratio: 2.247951e-01	ci left: 2.545698e-04	ci right 3.199098e-04	k: 303	n:1060000
PPP2R2B   1060000 perm   602 sec   (1762 perm/sec)   p_kst 2.858491e-04   p_cons 3.628302e-03   p_joint 5.660377e-06

Joint ci ratio: 1.481615e+00	ci left: 2.057848e-06	ci right 1.220508e-05	k: 6	n:1070000
Cons ci ratio: 6.269606e-02	ci left: 3.526034e-03	ci right 3.755170e-03	k: 3894	n:1070000
KS ci ratio: 2.233305e-01	ci left: 2.557192e-04	ci right 3.208678e-04	k: 307	n:1070000
PPP2R2B   1070000 perm   611 sec   (1750 perm/sec)   p_kst 2.869159e-04   p_cons 3.639252e-03   p_joint 5.607477e-06

Joint ci ratio: 1.481615e+00	ci left: 2.038794e-06	ci right 1.209207e-05	k: 6	n:1080000
Cons ci ratio: 6.233675e-02	ci left: 3.534402e-03	ci right 3.762717e-03	k: 3939	n:1080000
KS ci ratio: 2.226090e-01	ci left: 2.550998e-04	ci right 3.198519e-04	k: 309	n:1080000
PPP2R2B   1080000 perm   621 sec   (1738 perm/sec)   p_kst 2.861111e-04   p_cons 3.647222e-03   p_joint 5.555556e-06

Joint ci ratio: 1.481615e+00	ci left: 2.020089e-06	ci right 1.198113e-05	k: 6	n:1090000
Cons ci ratio: 6.202260e-02	ci left: 3.538103e-03	ci right 3.765465e-03	k: 3979	n:1090000
KS ci ratio: 2.222510e-01	ci left: 2.536258e-04	ci right 3.178860e-04	k: 310	n:1090000
PPP2R2B   1090000 perm   631 sec   (1727 perm/sec)   p_kst 2.844037e-04   p_cons 3.650459e-03   p_joint 5.504587e-06

Joint ci ratio: 1.481615e+00	ci left: 2.001725e-06	ci right 1.187221e-05	k: 6	n:1100000
Cons ci ratio: 6.166699e-02	ci left: 3.547110e-03	ci right 3.773697e-03	k: 4025	n:1100000
KS ci ratio: 2.211867e-01	ci left: 2.538959e-04	ci right 3.178746e-04	k: 313	n:1100000
PPP2R2B   1100000 perm   641 sec   (1716 perm/sec)   p_kst 2.845455e-04   p_cons 3.659091e-03   p_joint 5.454545e-06

Joint ci ratio: 1.481615e+00	ci left: 1.983691e-06	ci right 1.176525e-05	k: 6	n:1110000
Cons ci ratio: 6.133255e-02	ci left: 3.554185e-03	ci right 3.779949e-03	k: 4069	n:1110000
KS ci ratio: 2.187613e-01	ci left: 2.575675e-04	ci right 3.216640e-04	k: 320	n:1110000
PPP2R2B   1110000 perm   651 sec   (1705 perm/sec)   p_kst 2.882883e-04   p_cons 3.665766e-03   p_joint 5.405405e-06

Joint ci ratio: 1.481615e+00	ci left: 1.965979e-06	ci right 1.166021e-05	k: 6	n:1120000
Cons ci ratio: 6.102582e-02	ci left: 3.558498e-03	ci right 3.783366e-03	k: 4110	n:1120000
KS ci ratio: 2.180831e-01	ci left: 2.569558e-04	ci right 3.206753e-04	k: 322	n:1120000
PPP2R2B   1120000 perm   661 sec   (1695 perm/sec)   p_kst 2.875000e-04   p_cons 3.669643e-03   p_joint 5.357143e-06

Joint ci ratio: 1.481615e+00	ci left: 1.948581e-06	ci right 1.155702e-05	k: 6	n:1130000
Cons ci ratio: 6.068698e-02	ci left: 3.567096e-03	ci right 3.791212e-03	k: 4156	n:1130000
KS ci ratio: 2.167450e-01	ci left: 2.580289e-04	ci right 3.215697e-04	k: 326	n:1130000
PPP2R2B   1130000 perm   671 sec   (1684 perm/sec)   p_kst 2.884956e-04   p_cons 3.677876e-03   p_joint 5.309735e-06

Joint ci ratio: 1.481616e+00	ci left: 1.931489e-06	ci right 1.145564e-05	k: 6	n:1140000
Cons ci ratio: 6.046212e-02	ci left: 3.562587e-03	ci right 3.785561e-03	k: 4187	n:1140000
KS ci ratio: 2.144613e-01	ci left: 2.615744e-04	ci right 3.252202e-04	k: 333	n:1140000
PPP2R2B   1140000 perm   681 sec   (1674 perm/sec)   p_kst 2.921053e-04   p_cons 3.672807e-03   p_joint 5.263158e-06

Joint ci ratio: 1.481616e+00	ci left: 1.914693e-06	ci right 1.135603e-05	k: 6	n:1150000
Cons ci ratio: 6.021824e-02	ci left: 3.560727e-03	ci right 3.782654e-03	k: 4221	n:1150000
KS ci ratio: 2.141412e-01	ci left: 2.601227e-04	ci right 3.233084e-04	k: 334	n:1150000
PPP2R2B   1150000 perm   692 sec   (1662 perm/sec)   p_kst 2.904348e-04   p_cons 3.670435e-03   p_joint 5.217391e-06

Joint ci ratio: 1.481616e+00	ci left: 1.898187e-06	ci right 1.125813e-05	k: 6	n:1160000
Cons ci ratio: 5.992080e-02	ci left: 3.565694e-03	ci right 3.786795e-03	k: 4263	n:1160000
KS ci ratio: 2.131887e-01	ci left: 2.603281e-04	ci right 3.232457e-04	k: 337	n:1160000
PPP2R2B   1160000 perm   702 sec   (1653 perm/sec)   p_kst 2.905172e-04   p_cons 3.675000e-03   p_joint 5.172414e-06

Joint ci ratio: 1.481616e+00	ci left: 1.881963e-06	ci right 1.116191e-05	k: 6	n:1170000
Cons ci ratio: 5.965554e-02	ci left: 3.567211e-03	ci right 3.787394e-03	k: 4301	n:1170000
KS ci ratio: 2.122489e-01	ci left: 2.605306e-04	ci right 3.231834e-04	k: 340	n:1170000
PPP2R2B   1170000 perm   712 sec   (1643 perm/sec)   p_kst 2.905983e-04   p_cons 3.676068e-03   p_joint 5.128205e-06

Joint ci ratio: 1.481616e+00	ci left: 1.866014e-06	ci right 1.106732e-05	k: 6	n:1180000
Cons ci ratio: 5.936632e-02	ci left: 3.572045e-03	ci right 3.791420e-03	k: 4343	n:1180000
KS ci ratio: 2.110148e-01	ci left: 2.615329e-04	ci right 3.240137e-04	k: 344	n:1180000
PPP2R2B   1180000 perm   723 sec   (1633 perm/sec)   p_kst 2.915254e-04   p_cons 3.680508e-03   p_joint 5.084746e-06

Joint ci ratio: 1.481616e+00	ci left: 1.850333e-06	ci right 1.097432e-05	k: 6	n:1190000
Cons ci ratio: 5.914898e-02	ci left: 3.568520e-03	ci right 3.786848e-03	k: 4375	n:1190000
KS ci ratio: 2.101032e-01	ci left: 2.617232e-04	ci right 3.239447e-04	k: 347	n:1190000
PPP2R2B   1190000 perm   733 sec   (1623 perm/sec)   p_kst 2.915966e-04   p_cons 3.676471e-03   p_joint 5.042017e-06

Joint ci ratio: 1.481616e+00	ci left: 1.834914e-06	ci right 1.088286e-05	k: 6	n:1200000
Cons ci ratio: 5.896086e-02	ci left: 3.561770e-03	ci right 3.778969e-03	k: 4403	n:1200000
KS ci ratio: 2.095022e-01	ci left: 2.611213e-04	ci right 3.229993e-04	k: 349	n:1200000
PPP2R2B   1200000 perm   744 sec   (1613 perm/sec)   p_kst 2.908333e-04   p_cons 3.669167e-03   p_joint 5.000000e-06

Joint ci ratio: 1.481616e+00	ci left: 1.819749e-06	ci right 1.079292e-05	k: 6	n:1210000
Cons ci ratio: 5.868821e-02	ci left: 3.565720e-03	ci right 3.782121e-03	k: 4444	n:1210000
KS ci ratio: 2.095024e-01	ci left: 2.589632e-04	ci right 3.203299e-04	k: 349	n:1210000
PPP2R2B   1210000 perm   755 sec   (1603 perm/sec)   p_kst 2.884298e-04   p_cons 3.672727e-03   p_joint 4.958678e-06

Joint ci ratio: 1.481616e+00	ci left: 1.804833e-06	ci right 1.070446e-05	k: 6	n:1220000
Cons ci ratio: 5.847820e-02	ci left: 3.562338e-03	ci right 3.777734e-03	k: 4476	n:1220000
KS ci ratio: 2.083153e-01	ci left: 2.599478e-04	ci right 3.211542e-04	k: 353	n:1220000
PPP2R2B   1220000 perm   766 sec   (1593 perm/sec)   p_kst 2.893443e-04   p_cons 3.668852e-03   p_joint 4.918033e-06

Joint ci ratio: 1.481616e+00	ci left: 1.790160e-06	ci right 1.061743e-05	k: 6	n:1230000
Cons ci ratio: 5.821216e-02	ci left: 3.566223e-03	ci right 3.780840e-03	k: 4517	n:1230000
KS ci ratio: 2.074382e-01	ci left: 2.601464e-04	ci right 3.211090e-04	k: 356	n:1230000
PPP2R2B   1230000 perm   776 sec   (1584 perm/sec)   p_kst 2.894309e-04   p_cons 3.672358e-03   p_joint 4.878049e-06

Joint ci ratio: 1.481616e+00	ci left: 1.775723e-06	ci right 1.053180e-05	k: 6	n:1240000
Cons ci ratio: 5.804563e-02	ci left: 3.558126e-03	ci right 3.771622e-03	k: 4543	n:1240000
KS ci ratio: 2.071484e-01	ci left: 2.588130e-04	ci right 3.193677e-04	k: 357	n:1240000
PPP2R2B   1240000 perm   787 sec   (1575 perm/sec)   p_kst 2.879032e-04   p_cons 3.663710e-03   p_joint 4.838710e-06

Joint ci ratio: 1.481616e+00	ci left: 1.761517e-06	ci right 1.044755e-05	k: 6	n:1250000
Cons ci ratio: 5.779174e-02	ci left: 3.561198e-03	ci right 3.773912e-03	k: 4583	n:1250000
KS ci ratio: 2.071487e-01	ci left: 2.567425e-04	ci right 3.168128e-04	k: 357	n:1250000
PPP2R2B   1250000 perm   798 sec   (1566 perm/sec)   p_kst 2.856000e-04   p_cons 3.666400e-03   p_joint 4.800000e-06

Joint ci ratio: 1.481616e+00	ci left: 1.747537e-06	ci right 1.036463e-05	k: 6	n:1260000
Cons ci ratio: 5.757867e-02	ci left: 3.559529e-03	ci right 3.771334e-03	k: 4617	n:1260000
KS ci ratio: 2.065725e-01	ci left: 2.562099e-04	ci right 3.159678e-04	k: 359	n:1260000
PPP2R2B   1260000 perm   809 sec   (1557 perm/sec)   p_kst 2.849206e-04   p_cons 3.664286e-03   p_joint 4.761905e-06

Joint ci ratio: 1.481616e+00	ci left: 1.733777e-06	ci right 1.028302e-05	k: 6	n:1270000
Cons ci ratio: 5.735556e-02	ci left: 3.559441e-03	ci right 3.770392e-03	k: 4653	n:1270000
KS ci ratio: 2.054343e-01	ci left: 2.571797e-04	ci right 3.167917e-04	k: 363	n:1270000
PPP2R2B   1270000 perm   820 sec   (1548 perm/sec)   p_kst 2.858268e-04   p_cons 3.663780e-03   p_joint 4.724409e-06

Joint ci ratio: 1.385924e+00	ci left: 2.198724e-06	ci right 1.126768e-05	k: 7	n:1280000
Cons ci ratio: 5.710448e-02	ci left: 3.563206e-03	ci right 3.773425e-03	k: 4694	n:1280000
KS ci ratio: 2.040376e-01	ci left: 2.588765e-04	ci right 3.184230e-04	k: 368	n:1280000
PPP2R2B   1280000 perm   832 sec   (1539 perm/sec)   p_kst 2.875000e-04   p_cons 3.667187e-03   p_joint 5.468750e-06

Joint ci ratio: 1.385924e+00	ci left: 2.181679e-06	ci right 1.118034e-05	k: 7	n:1290000
Cons ci ratio: 5.688681e-02	ci left: 3.563093e-03	ci right 3.772478e-03	k: 4730	n:1290000
KS ci ratio: 2.026689e-01	ci left: 2.605483e-04	ci right 3.200276e-04	k: 373	n:1290000
PPP2R2B   1290000 perm   843 sec   (1530 perm/sec)   p_kst 2.891473e-04   p_cons 3.666667e-03   p_joint 5.426357e-06

Joint ci ratio: 1.385924e+00	ci left: 2.164897e-06	ci right 1.109433e-05	k: 7	n:1300000
Cons ci ratio: 5.670147e-02	ci left: 3.559192e-03	ci right 3.767644e-03	k: 4761	n:1300000
KS ci ratio: 2.015937e-01	ci left: 2.614653e-04	ci right 3.207983e-04	k: 377	n:1300000
PPP2R2B   1300000 perm   854 sec   (1522 perm/sec)   p_kst 2.900000e-04   p_cons 3.662308e-03   p_joint 5.384615e-06

Joint ci ratio: 1.385925e+00	ci left: 2.148371e-06	ci right 1.100964e-05	k: 7	n:1310000
Cons ci ratio: 5.646475e-02	ci left: 3.562125e-03	ci right 3.769850e-03	k: 4801	n:1310000
KS ci ratio: 2.005353e-01	ci left: 2.623691e-04	ci right 3.215564e-04	k: 381	n:1310000
PPP2R2B   1310000 perm   866 sec   (1513 perm/sec)   p_kst 2.908397e-04   p_cons 3.664885e-03   p_joint 5.343511e-06

Joint ci ratio: 1.385925e+00	ci left: 2.132096e-06	ci right 1.092624e-05	k: 7	n:1320000
Cons ci ratio: 5.621349e-02	ci left: 3.567256e-03	ci right 3.774325e-03	k: 4844	n:1320000
KS ci ratio: 1.997525e-01	ci left: 2.625403e-04	ci right 3.215068e-04	k: 384	n:1320000
PPP2R2B   1320000 perm   877 sec   (1505 perm/sec)   p_kst 2.909091e-04   p_cons 3.669697e-03   p_joint 5.303030e-06

Joint ci ratio: 1.385925e+00	ci left: 2.116065e-06	ci right 1.084409e-05	k: 7	n:1330000
Cons ci ratio: 5.602310e-02	ci left: 3.564899e-03	ci right 3.771107e-03	k: 4877	n:1330000
KS ci ratio: 1.994937e-01	ci left: 2.612806e-04	ci right 3.198789e-04	k: 385	n:1330000
PPP2R2B   1330000 perm   888 sec   (1497 perm/sec)   p_kst 2.894737e-04   p_cons 3.666917e-03   p_joint 5.263158e-06

Joint ci ratio: 1.385925e+00	ci left: 2.100273e-06	ci right 1.076316e-05	k: 7	n:1340000
Cons ci ratio: 5.574356e-02	ci left: 3.574352e-03	ci right 3.780042e-03	k: 4926	n:1340000
KS ci ratio: 1.984680e-01	ci left: 2.621671e-04	ci right 3.206253e-04	k: 389	n:1340000
PPP2R2B   1340000 perm   900 sec   (1489 perm/sec)   p_kst 2.902985e-04   p_cons 3.676119e-03   p_joint 5.223881e-06

Joint ci ratio: 1.385925e+00	ci left: 2.084716e-06	ci right 1.068343e-05	k: 7	n:1350000
Cons ci ratio: 5.551859e-02	ci left: 3.577093e-03	ci right 3.782083e-03	k: 4966	n:1350000
KS ci ratio: 1.982141e-01	ci left: 2.609291e-04	ci right 3.190278e-04	k: 390	n:1350000
PPP2R2B   1350000 perm   912 sec   (1480 perm/sec)   p_kst 2.888889e-04   p_cons 3.678519e-03   p_joint 5.185185e-06

Joint ci ratio: 1.385925e+00	ci left: 2.069387e-06	ci right 1.060488e-05	k: 7	n:1360000
Cons ci ratio: 5.535738e-02	ci left: 3.571818e-03	ci right 3.775893e-03	k: 4995	n:1360000
KS ci ratio: 1.967104e-01	ci left: 2.632042e-04	ci right 3.213116e-04	k: 396	n:1360000
PPP2R2B   1360000 perm   924 sec   (1472 perm/sec)   p_kst 2.911765e-04   p_cons 3.672794e-03   p_joint 5.147059e-06

Joint ci ratio: 1.306662e+00	ci left: 2.521049e-06	ci right 1.150594e-05	k: 8	n:1370000
Cons ci ratio: 5.516452e-02	ci left: 3.570941e-03	ci right 3.774232e-03	k: 5030	n:1370000
KS ci ratio: 1.954831e-01	ci left: 2.647535e-04	ci right 3.227948e-04	k: 401	n:1370000
PPP2R2B   1370000 perm   936 sec   (1464 perm/sec)   p_kst 2.927007e-04   p_cons 3.671533e-03   p_joint 5.839416e-06

Joint ci ratio: 1.306662e+00	ci left: 2.502780e-06	ci right 1.142257e-05	k: 8	n:1380000
Cons ci ratio: 5.494102e-02	ci left: 3.574366e-03	ci right 3.777001e-03	k: 5071	n:1380000
KS ci ratio: 1.949987e-01	ci left: 2.642134e-04	ci right 3.219758e-04	k: 403	n:1380000
PPP2R2B   1380000 perm   948 sec   (1456 perm/sec)   p_kst 2.920290e-04   p_cons 3.674638e-03   p_joint 5.797101e-06

Joint ci ratio: 1.306662e+00	ci left: 2.484775e-06	ci right 1.134039e-05	k: 8	n:1390000
Cons ci ratio: 5.476862e-02	ci left: 3.571357e-03	ci right 3.773166e-03	k: 5103	n:1390000
KS ci ratio: 1.940404e-01	ci left: 2.650501e-04	ci right 3.226771e-04	k: 407	n:1390000
PPP2R2B   1390000 perm   960 sec   (1448 perm/sec)   p_kst 2.928058e-04   p_cons 3.671223e-03   p_joint 5.755396e-06

Joint ci ratio: 1.306662e+00	ci left: 2.467026e-06	ci right 1.125939e-05	k: 8	n:1400000
Cons ci ratio: 5.458716e-02	ci left: 3.569801e-03	ci right 3.770833e-03	k: 5137	n:1400000
KS ci ratio: 1.928621e-01	ci left: 2.665554e-04	ci right 3.241164e-04	k: 412	n:1400000
PPP2R2B   1400000 perm   972 sec   (1440 perm/sec)   p_kst 2.942857e-04   p_cons 3.669286e-03   p_joint 5.714286e-06

Joint ci ratio: 1.306662e+00	ci left: 2.449529e-06	ci right 1.117954e-05	k: 8	n:1410000
Cons ci ratio: 5.444448e-02	ci left: 3.563370e-03	ci right 3.763500e-03	k: 5164	n:1410000
KS ci ratio: 1.923968e-01	ci left: 2.660150e-04	ci right 3.233045e-04	k: 414	n:1410000
PPP2R2B   1410000 perm   984 sec   (1432 perm/sec)   p_kst 2.936170e-04   p_cons 3.662411e-03   p_joint 5.673759e-06

Joint ci ratio: 1.306662e+00	ci left: 2.432279e-06	ci right 1.110081e-05	k: 8	n:1420000
Cons ci ratio: 5.422958e-02	ci left: 3.566757e-03	ci right 3.766261e-03	k: 5205	n:1420000
KS ci ratio: 1.914762e-01	ci left: 2.668232e-04	ci right 3.239797e-04	k: 418	n:1420000
PPP2R2B   1420000 perm   997 sec   (1424 perm/sec)   p_kst 2.943662e-04   p_cons 3.665493e-03   p_joint 5.633803e-06

Joint ci ratio: 1.239608e+00	ci left: 2.877887e-06	ci right 1.194738e-05	k: 9	n:1430000
Cons ci ratio: 5.404824e-02	ci left: 3.565959e-03	ci right 3.764731e-03	k: 5240	n:1430000
KS ci ratio: 1.901196e-01	ci left: 2.689527e-04	ci right 3.261101e-04	k: 424	n:1430000
PPP2R2B   1430000 perm   1009 sec   (1417 perm/sec)   p_kst 2.965035e-04   p_cons 3.664336e-03   p_joint 6.293706e-06

Joint ci ratio: 1.239608e+00	ci left: 2.857902e-06	ci right 1.186441e-05	k: 9	n:1440000
Cons ci ratio: 5.387895e-02	ci left: 3.563803e-03	ci right 3.761813e-03	k: 5273	n:1440000
KS ci ratio: 1.894521e-01	ci left: 2.690693e-04	ci right 3.260276e-04	k: 427	n:1440000
PPP2R2B   1440000 perm   1021 sec   (1410 perm/sec)   p_kst 2.965278e-04   p_cons 3.661806e-03   p_joint 6.250000e-06

Joint ci ratio: 1.239608e+00	ci left: 2.838192e-06	ci right 1.178259e-05	k: 9	n:1450000
Cons ci ratio: 5.367572e-02	ci left: 3.566440e-03	ci right 3.763826e-03	k: 5313	n:1450000
KS ci ratio: 1.881378e-01	ci left: 2.711561e-04	ci right 3.281124e-04	k: 433	n:1450000
PPP2R2B   1450000 perm   1034 sec   (1403 perm/sec)   p_kst 2.986207e-04   p_cons 3.664138e-03   p_joint 6.206897e-06

Joint ci ratio: 1.239608e+00	ci left: 2.818752e-06	ci right 1.170189e-05	k: 9	n:1460000
Cons ci ratio: 5.350487e-02	ci left: 3.564988e-03	ci right 3.761646e-03	k: 5347	n:1460000
KS ci ratio: 1.877059e-01	ci left: 2.706043e-04	ci right 3.272993e-04	k: 435	n:1460000
PPP2R2B   1460000 perm   1046 sec   (1396 perm/sec)   p_kst 2.979452e-04   p_cons 3.662329e-03   p_joint 6.164384e-06

Joint ci ratio: 1.181920e+00	ci left: 3.262174e-06	ci right 1.251041e-05	k: 10	n:1470000
Cons ci ratio: 5.332074e-02	ci left: 3.565571e-03	ci right 3.761563e-03	k: 5384	n:1470000
KS ci ratio: 1.868506e-01	ci left: 2.713569e-04	ci right 3.279213e-04	k: 439	n:1470000
PPP2R2B   1470000 perm   1058 sec   (1389 perm/sec)   p_kst 2.986395e-04   p_cons 3.662585e-03   p_joint 6.802721e-06

Joint ci ratio: 1.181920e+00	ci left: 3.240132e-06	ci right 1.242588e-05	k: 10	n:1480000
Cons ci ratio: 5.320254e-02	ci left: 3.557479e-03	ci right 3.752580e-03	k: 5408	n:1480000
KS ci ratio: 1.866388e-01	ci left: 2.701675e-04	ci right 3.264129e-04	k: 440	n:1480000
PPP2R2B   1480000 perm   1071 sec   (1382 perm/sec)   p_kst 2.972973e-04   p_cons 3.654054e-03   p_joint 6.756757e-06

Joint ci ratio: 1.181920e+00	ci left: 3.218386e-06	ci right 1.234249e-05	k: 10	n:1490000
Cons ci ratio: 5.307042e-02	ci left: 3.551483e-03	ci right 3.745756e-03	k: 5435	n:1490000
KS ci ratio: 1.864277e-01	ci left: 2.689941e-04	ci right 3.249246e-04	k: 441	n:1490000
PPP2R2B   1490000 perm   1084 sec   (1375 perm/sec)   p_kst 2.959732e-04   p_cons 3.647651e-03   p_joint 6.711409e-06

Joint ci ratio: 1.181920e+00	ci left: 3.196930e-06	ci right 1.226020e-05	k: 10	n:1500000
Cons ci ratio: 5.289557e-02	ci left: 3.551488e-03	ci right 3.745103e-03	k: 5471	n:1500000
KS ci ratio: 1.857982e-01	ci left: 2.691076e-04	ci right 3.248515e-04	k: 444	n:1500000
PPP2R2B   1500000 perm   1096 sec   (1369 perm/sec)   p_kst 2.960000e-04   p_cons 3.647333e-03   p_joint 6.666667e-06

Joint ci ratio: 1.181920e+00	ci left: 3.175759e-06	ci right 1.217901e-05	k: 10	n:1510000
Cons ci ratio: 5.264574e-02	ci left: 3.561952e-03	ci right 3.755191e-03	k: 5523	n:1510000
KS ci ratio: 1.849687e-01	ci left: 2.698515e-04	ci right 3.254720e-04	k: 448	n:1510000
PPP2R2B   1510000 perm   1109 sec   (1362 perm/sec)   p_kst 2.966887e-04   p_cons 3.657616e-03   p_joint 6.622517e-06

Joint ci ratio: 1.181920e+00	ci left: 3.154865e-06	ci right 1.209889e-05	k: 10	n:1520000
Cons ci ratio: 5.245137e-02	ci left: 3.565137e-03	ci right 3.757814e-03	k: 5564	n:1520000
KS ci ratio: 1.841502e-01	ci left: 2.705862e-04	ci right 3.260837e-04	k: 452	n:1520000
PPP2R2B   1520000 perm   1122 sec   (1355 perm/sec)   p_kst 2.973684e-04   p_cons 3.660526e-03   p_joint 6.578947e-06

Joint ci ratio: 1.181920e+00	ci left: 3.134245e-06	ci right 1.201981e-05	k: 10	n:1530000
Cons ci ratio: 5.228255e-02	ci left: 3.565057e-03	ci right 3.757091e-03	k: 5600	n:1530000
KS ci ratio: 1.837450e-01	ci left: 2.700647e-04	ci right 3.253198e-04	k: 454	n:1530000
PPP2R2B   1530000 perm   1135 sec   (1348 perm/sec)   p_kst 2.967320e-04   p_cons 3.660131e-03   p_joint 6.535948e-06

Joint ci ratio: 1.181920e+00	ci left: 3.113893e-06	ci right 1.194176e-05	k: 10	n:1540000
Cons ci ratio: 5.210607e-02	ci left: 3.566261e-03	ci right 3.757691e-03	k: 5638	n:1540000
KS ci ratio: 1.829426e-01	ci left: 2.707892e-04	ci right 3.259238e-04	k: 458	n:1540000
PPP2R2B   1540000 perm   1148 sec   (1341 perm/sec)   p_kst 2.974026e-04   p_cons 3.661039e-03   p_joint 6.493506e-06

Joint ci ratio: 1.131602e+00	ci left: 3.542689e-06	ci right 1.269805e-05	k: 11	n:1550000
Cons ci ratio: 5.195433e-02	ci left: 3.564266e-03	ci right 3.755015e-03	k: 5671	n:1550000
KS ci ratio: 1.825454e-01	ci left: 2.702735e-04	ci right 3.251704e-04	k: 460	n:1550000
PPP2R2B   1550000 perm   1161 sec   (1335 perm/sec)   p_kst 2.967742e-04   p_cons 3.658710e-03   p_joint 7.096774e-06

Joint ci ratio: 1.131602e+00	ci left: 3.519980e-06	ci right 1.261666e-05	k: 11	n:1560000
Cons ci ratio: 5.176749e-02	ci left: 3.567359e-03	ci right 3.757568e-03	k: 5712	n:1560000
KS ci ratio: 1.809815e-01	ci left: 2.734359e-04	ci right 3.284472e-04	k: 468	n:1560000
PPP2R2B   1560000 perm   1175 sec   (1328 perm/sec)   p_kst 3.000000e-04   p_cons 3.661538e-03   p_joint 7.051282e-06

Joint ci ratio: 1.131602e+00	ci left: 3.497559e-06	ci right 1.253630e-05	k: 11	n:1570000
Cons ci ratio: 5.161418e-02	ci left: 3.566013e-03	ci right 3.755570e-03	k: 5746	n:1570000
KS ci ratio: 1.802146e-01	ci left: 2.741269e-04	ci right 3.290179e-04	k: 472	n:1570000
PPP2R2B   1570000 perm   1188 sec   (1322 perm/sec)   p_kst 3.006369e-04   p_cons 3.659873e-03   p_joint 7.006369e-06

Joint ci ratio: 1.131602e+00	ci left: 3.475423e-06	ci right 1.245695e-05	k: 11	n:1580000
Cons ci ratio: 5.146668e-02	ci left: 3.564061e-03	ci right 3.752956e-03	k: 5779	n:1580000
KS ci ratio: 1.796458e-01	ci left: 2.742051e-04	ci right 3.289197e-04	k: 475	n:1580000
PPP2R2B   1580000 perm   1202 sec   (1315 perm/sec)   p_kst 3.006329e-04   p_cons 3.657595e-03   p_joint 6.962025e-06

Joint ci ratio: 1.131602e+00	ci left: 3.453565e-06	ci right 1.237861e-05	k: 11	n:1590000
Cons ci ratio: 5.129831e-02	ci left: 3.565238e-03	ci right 3.753559e-03	k: 5817	n:1590000
KS ci ratio: 1.787095e-01	ci left: 2.754842e-04	ci right 3.301366e-04	k: 480	n:1590000
PPP2R2B   1590000 perm   1215 sec   (1309 perm/sec)   p_kst 3.018868e-04   p_cons 3.658491e-03   p_joint 6.918239e-06

Joint ci ratio: 1.131602e+00	ci left: 3.431980e-06	ci right 1.230124e-05	k: 11	n:1600000
Cons ci ratio: 5.116667e-02	ci left: 3.561464e-03	ci right 3.749089e-03	k: 5847	n:1600000
KS ci ratio: 1.785242e-01	ci left: 2.743594e-04	ci right 3.287261e-04	k: 481	n:1600000
PPP2R2B   1600000 perm   1229 sec   (1302 perm/sec)   p_kst 3.006250e-04   p_cons 3.654375e-03   p_joint 6.875000e-06

Joint ci ratio: 1.131602e+00	ci left: 3.410663e-06	ci right 1.222484e-05	k: 11	n:1610000
Cons ci ratio: 5.104911e-02	ci left: 3.555899e-03	ci right 3.742788e-03	k: 5874	n:1610000
KS ci ratio: 1.774231e-01	ci left: 2.762161e-04	ci right 3.305769e-04	k: 487	n:1610000
PPP2R2B   1610000 perm   1242 sec   (1296 perm/sec)   p_kst 3.024845e-04   p_cons 3.648447e-03   p_joint 6.832298e-06

Joint ci ratio: 1.131602e+00	ci left: 3.389610e-06	ci right 1.214937e-05	k: 11	n:1620000
Cons ci ratio: 5.091937e-02	ci left: 3.552231e-03	ci right 3.738439e-03	k: 5904	n:1620000
KS ci ratio: 1.765210e-01	ci left: 2.774608e-04	ci right 3.317593e-04	k: 492	n:1620000
PPP2R2B   1620000 perm   1256 sec   (1290 perm/sec)   p_kst 3.037037e-04   p_cons 3.644444e-03   p_joint 6.790123e-06

Joint ci ratio: 1.131602e+00	ci left: 3.368815e-06	ci right 1.207484e-05	k: 11	n:1630000
Cons ci ratio: 5.078632e-02	ci left: 3.549215e-03	ci right 3.734764e-03	k: 5935	n:1630000
KS ci ratio: 1.759864e-01	ci left: 2.775178e-04	ci right 3.316455e-04	k: 495	n:1630000
PPP2R2B   1630000 perm   1270 sec   (1284 perm/sec)   p_kst 3.036810e-04   p_cons 3.641104e-03   p_joint 6.748466e-06

Joint ci ratio: 1.131602e+00	ci left: 3.348273e-06	ci right 1.200121e-05	k: 11	n:1640000
Cons ci ratio: 5.059902e-02	ci left: 3.554063e-03	ci right 3.739160e-03	k: 5979	n:1640000
KS ci ratio: 1.751059e-01	ci left: 2.787405e-04	ci right 3.328059e-04	k: 500	n:1640000
PPP2R2B   1640000 perm   1284 sec   (1277 perm/sec)   p_kst 3.048780e-04   p_cons 3.645732e-03   p_joint 6.707317e-06

Joint ci ratio: 1.131602e+00	ci left: 3.327981e-06	ci right 1.192848e-05	k: 11	n:1650000
Cons ci ratio: 5.045162e-02	ci left: 3.553467e-03	ci right 3.737979e-03	k: 6014	n:1650000
KS ci ratio: 1.745840e-01	ci left: 2.787898e-04	ci right 3.326865e-04	k: 503	n:1650000
PPP2R2B   1650000 perm   1298 sec   (1271 perm/sec)   p_kst 3.048485e-04   p_cons 3.644848e-03   p_joint 6.666667e-06

Joint ci ratio: 1.131602e+00	ci left: 3.307932e-06	ci right 1.185662e-05	k: 11	n:1660000
Cons ci ratio: 5.029715e-02	ci left: 3.554069e-03	ci right 3.738031e-03	k: 6051	n:1660000
KS ci ratio: 1.744111e-01	ci left: 2.776864e-04	ci right 3.313111e-04	k: 504	n:1660000
PPP2R2B   1660000 perm   1313 sec   (1265 perm/sec)   p_kst 3.036145e-04   p_cons 3.645181e-03   p_joint 6.626506e-06

Joint ci ratio: 1.131602e+00	ci left: 3.288124e-06	ci right 1.178562e-05	k: 11	n:1670000
Cons ci ratio: 5.014822e-02	ci left: 3.554074e-03	ci right 3.737475e-03	k: 6087	n:1670000
KS ci ratio: 1.738954e-01	ci left: 2.777417e-04	ci right 3.312019e-04	k: 507	n:1670000
PPP2R2B   1670000 perm   1326 sec   (1259 perm/sec)   p_kst 3.035928e-04   p_cons 3.644910e-03   p_joint 6.586826e-06

Joint ci ratio: 1.131602e+00	ci left: 3.268552e-06	ci right 1.171547e-05	k: 11	n:1680000
Cons ci ratio: 5.000881e-02	ci left: 3.552903e-03	ci right 3.735719e-03	k: 6121	n:1680000
KS ci ratio: 1.730458e-01	ci left: 2.789355e-04	ci right 3.323357e-04	k: 512	n:1680000
PPP2R2B   1680000 perm   1340 sec   (1254 perm/sec)   p_kst 3.047619e-04   p_cons 3.643452e-03   p_joint 6.547619e-06

Joint ci ratio: 1.131602e+00	ci left: 3.249212e-06	ci right 1.164615e-05	k: 11	n:1690000
Cons ci ratio: 4.983806e-02	ci left: 3.556422e-03	ci right 3.738777e-03	k: 6163	n:1690000
KS ci ratio: 1.723750e-01	ci left: 2.795495e-04	ci right 3.328383e-04	k: 516	n:1690000
PPP2R2B   1690000 perm   1355 sec   (1247 perm/sec)   p_kst 3.053254e-04   p_cons 3.646746e-03   p_joint 6.508876e-06

Joint ci ratio: 1.131602e+00	ci left: 3.230099e-06	ci right 1.157764e-05	k: 11	n:1700000
Cons ci ratio: 4.966905e-02	ci left: 3.559901e-03	ci right 3.741797e-03	k: 6205	n:1700000
KS ci ratio: 1.720426e-01	ci left: 2.790309e-04	ci right 3.321075e-04	k: 518	n:1700000
PPP2R2B   1700000 perm   1369 sec   (1242 perm/sec)   p_kst 3.047059e-04   p_cons 3.650000e-03   p_joint 6.470588e-06

Joint ci ratio: 1.131602e+00	ci left: 3.211209e-06	ci right 1.150993e-05	k: 11	n:1710000
Cons ci ratio: 4.950573e-02	ci left: 3.562762e-03	ci right 3.744189e-03	k: 6246	n:1710000
KS ci ratio: 1.718772e-01	ci left: 2.779587e-04	ci right 3.307753e-04	k: 519	n:1710000
PPP2R2B   1710000 perm   1384 sec   (1236 perm/sec)   p_kst 3.035088e-04   p_cons 3.652632e-03   p_joint 6.432749e-06

Joint ci ratio: 1.131602e+00	ci left: 3.192539e-06	ci right 1.144302e-05	k: 11	n:1720000
Cons ci ratio: 4.932432e-02	ci left: 3.568462e-03	ci right 3.749494e-03	k: 6292	n:1720000
KS ci ratio: 1.708939e-01	ci left: 2.796815e-04	ci right 3.324901e-04	k: 525	n:1720000
PPP2R2B   1720000 perm   1399 sec   (1230 perm/sec)   p_kst 3.052326e-04   p_cons 3.658140e-03   p_joint 6.395349e-06

Joint ci ratio: 1.131602e+00	ci left: 3.174085e-06	ci right 1.137687e-05	k: 11	n:1730000
Cons ci ratio: 4.920336e-02	ci left: 3.565533e-03	ci right 3.745961e-03	k: 6323	n:1730000
KS ci ratio: 1.704087e-01	ci left: 2.797248e-04	ci right 3.323762e-04	k: 528	n:1730000
PPP2R2B   1730000 perm   1414 sec   (1224 perm/sec)   p_kst 3.052023e-04   p_cons 3.654913e-03   p_joint 6.358382e-06

Joint ci ratio: 1.131602e+00	ci left: 3.155843e-06	ci right 1.131149e-05	k: 11	n:1740000
Cons ci ratio: 4.904844e-02	ci left: 3.567748e-03	ci right 3.747703e-03	k: 6363	n:1740000
KS ci ratio: 1.694503e-01	ci left: 2.814189e-04	ci right 3.340608e-04	k: 534	n:1740000
PPP2R2B   1740000 perm   1429 sec   (1218 perm/sec)   p_kst 3.068966e-04   p_cons 3.656897e-03   p_joint 6.321839e-06

Joint ci ratio: 1.131602e+00	ci left: 3.137810e-06	ci right 1.124685e-05	k: 11	n:1750000
Cons ci ratio: 4.891414e-02	ci left: 3.567116e-03	ci right 3.746533e-03	k: 6398	n:1750000
KS ci ratio: 1.694504e-01	ci left: 2.798108e-04	ci right 3.321519e-04	k: 534	n:1750000
PPP2R2B   1750000 perm   1443 sec   (1212 perm/sec)   p_kst 3.051429e-04   p_cons 3.656000e-03   p_joint 6.285714e-06

Joint ci ratio: 1.087208e+00	ci left: 3.523059e-06	ci right 1.190996e-05	k: 12	n:1760000
Cons ci ratio: 4.877713e-02	ci left: 3.567053e-03	ci right 3.745950e-03	k: 6434	n:1760000
KS ci ratio: 1.688204e-01	ci left: 2.803974e-04	ci right 3.326335e-04	k: 538	n:1760000
PPP2R2B   1760000 perm   1458 sec   (1207 perm/sec)   p_kst 3.056818e-04   p_cons 3.655682e-03   p_joint 6.818182e-06

Joint ci ratio: 1.087208e+00	ci left: 3.503155e-06	ci right 1.184267e-05	k: 12	n:1770000
Cons ci ratio: 4.864882e-02	ci left: 3.565875e-03	ci right 3.744229e-03	k: 6468	n:1770000
KS ci ratio: 1.685082e-01	ci left: 2.798955e-04	ci right 3.319318e-04	k: 540	n:1770000
PPP2R2B   1770000 perm   1472 sec   (1202 perm/sec)   p_kst 3.050847e-04   p_cons 3.654237e-03   p_joint 6.779661e-06

Joint ci ratio: 1.047660e+00	ci left: 3.888743e-06	ci right 1.248895e-05	k: 13	n:1780000
Cons ci ratio: 4.849532e-02	ci left: 3.568596e-03	ci right 3.746508e-03	k: 6509	n:1780000
KS ci ratio: 1.678886e-01	ci left: 2.804757e-04	ci right 3.324087e-04	k: 544	n:1780000
PPP2R2B   1780000 perm   1487 sec   (1197 perm/sec)   p_kst 3.056180e-04   p_cons 3.656742e-03   p_joint 7.303371e-06

Joint ci ratio: 1.047660e+00	ci left: 3.867018e-06	ci right 1.241918e-05	k: 13	n:1790000
Cons ci ratio: 4.836921e-02	ci left: 3.567424e-03	ci right 3.744802e-03	k: 6543	n:1790000
KS ci ratio: 1.674284e-01	ci left: 2.805144e-04	ci right 3.322979e-04	k: 547	n:1790000
PPP2R2B   1790000 perm   1502 sec   (1192 perm/sec)   p_kst 3.055866e-04   p_cons 3.655307e-03   p_joint 7.262570e-06

Joint ci ratio: 1.047660e+00	ci left: 3.845535e-06	ci right 1.235019e-05	k: 13	n:1800000
Cons ci ratio: 4.822569e-02	ci left: 3.569010e-03	ci right 3.745926e-03	k: 6582	n:1800000
KS ci ratio: 1.665192e-01	ci left: 2.821501e-04	ci right 3.339243e-04	k: 553	n:1800000
PPP2R2B   1800000 perm   1517 sec   (1187 perm/sec)   p_kst 3.072222e-04   p_cons 3.656667e-03   p_joint 7.222222e-06

Joint ci ratio: 1.047660e+00	ci left: 3.824289e-06	ci right 1.228196e-05	k: 13	n:1810000
Cons ci ratio: 4.813087e-02	ci left: 3.563484e-03	ci right 3.739768e-03	k: 6608	n:1810000
KS ci ratio: 1.660701e-01	ci left: 2.821797e-04	ci right 3.338058e-04	k: 556	n:1810000
PPP2R2B   1810000 perm   1532 sec   (1182 perm/sec)   p_kst 3.071823e-04   p_cons 3.650829e-03   p_joint 7.182320e-06

Joint ci ratio: 1.047660e+00	ci left: 3.803276e-06	ci right 1.221447e-05	k: 13	n:1820000
Cons ci ratio: 4.799308e-02	ci left: 3.564532e-03	ci right 3.740350e-03	k: 6646	n:1820000
KS ci ratio: 1.653296e-01	ci left: 2.832626e-04	ci right 3.348328e-04	k: 561	n:1820000
PPP2R2B   1820000 perm   1547 sec   (1176 perm/sec)   p_kst 3.082418e-04   p_cons 3.651648e-03   p_joint 7.142857e-06

Joint ci ratio: 1.047660e+00	ci left: 3.782493e-06	ci right 1.214773e-05	k: 13	n:1830000
Cons ci ratio: 4.786724e-02	ci left: 3.563950e-03	ci right 3.739266e-03	k: 6681	n:1830000
KS ci ratio: 1.647444e-01	ci left: 2.838103e-04	ci right 3.352791e-04	k: 565	n:1830000
PPP2R2B   1830000 perm   1563 sec   (1171 perm/sec)   p_kst 3.087432e-04   p_cons 3.650820e-03   p_joint 7.103825e-06

Joint ci ratio: 1.047660e+00	ci left: 3.761936e-06	ci right 1.208171e-05	k: 13	n:1840000
Cons ci ratio: 4.773525e-02	ci left: 3.564449e-03	ci right 3.739292e-03	k: 6718	n:1840000
KS ci ratio: 1.644541e-01	ci left: 2.833100e-04	ci right 3.345886e-04	k: 567	n:1840000
PPP2R2B   1840000 perm   1579 sec   (1165 perm/sec)   p_kst 3.081522e-04   p_cons 3.651087e-03   p_joint 7.065217e-06

Joint ci ratio: 1.047660e+00	ci left: 3.741601e-06	ci right 1.201640e-05	k: 13	n:1850000
Cons ci ratio: 4.760435e-02	ci left: 3.564944e-03	ci right 3.739318e-03	k: 6755	n:1850000
KS ci ratio: 1.637349e-01	ci left: 2.843703e-04	ci right 3.355936e-04	k: 572	n:1850000
PPP2R2B   1850000 perm   1595 sec   (1160 perm/sec)   p_kst 3.091892e-04   p_cons 3.651351e-03   p_joint 7.027027e-06

Joint ci ratio: 1.047660e+00	ci left: 3.721485e-06	ci right 1.195180e-05	k: 13	n:1860000
Cons ci ratio: 4.748154e-02	ci left: 3.564371e-03	ci right 3.738255e-03	k: 6790	n:1860000
KS ci ratio: 1.633080e-01	ci left: 2.843883e-04	ci right 3.354682e-04	k: 575	n:1860000
PPP2R2B   1860000 perm   1610 sec   (1155 perm/sec)   p_kst 3.091398e-04   p_cons 3.650538e-03   p_joint 6.989247e-06

Joint ci ratio: 1.047660e+00	ci left: 3.701584e-06	ci right 1.188788e-05	k: 13	n:1870000
Cons ci ratio: 4.733532e-02	ci left: 3.567504e-03	ci right 3.740991e-03	k: 6832	n:1870000
KS ci ratio: 1.626037e-01	ci left: 2.854323e-04	ci right 3.364569e-04	k: 580	n:1870000
PPP2R2B   1870000 perm   1626 sec   (1150 perm/sec)   p_kst 3.101604e-04   p_cons 3.653476e-03   p_joint 6.951872e-06

Joint ci ratio: 1.047660e+00	ci left: 3.681895e-06	ci right 1.182465e-05	k: 13	n:1880000
Cons ci ratio: 4.722148e-02	ci left: 3.565873e-03	ci right 3.738853e-03	k: 6865	n:1880000
KS ci ratio: 1.621855e-01	ci left: 2.854450e-04	ci right 3.363278e-04	k: 583	n:1880000
PPP2R2B   1880000 perm   1642 sec   (1145 perm/sec)   p_kst 3.101064e-04   p_cons 3.651596e-03   p_joint 6.914894e-06

Joint ci ratio: 1.047660e+00	ci left: 3.662414e-06	ci right 1.176209e-05	k: 13	n:1890000
Cons ci ratio: 4.710845e-02	ci left: 3.564261e-03	ci right 3.736737e-03	k: 6898	n:1890000
KS ci ratio: 1.621856e-01	ci left: 2.839347e-04	ci right 3.345483e-04	k: 583	n:1890000
PPP2R2B   1890000 perm   1657 sec   (1140 perm/sec)   p_kst 3.084656e-04   p_cons 3.649735e-03   p_joint 6.878307e-06

Joint ci ratio: 1.047660e+00	ci left: 3.643138e-06	ci right 1.170018e-05	k: 13	n:1900000
Cons ci ratio: 4.695206e-02	ci left: 3.569428e-03	ci right 3.741564e-03	k: 6944	n:1900000
KS ci ratio: 1.614957e-01	ci left: 2.849653e-04	ci right 3.355256e-04	k: 588	n:1900000
PPP2R2B   1900000 perm   1673 sec   (1136 perm/sec)   p_kst 3.094737e-04   p_cons 3.654737e-03   p_joint 6.842105e-06

Joint ci ratio: 1.047660e+00	ci left: 3.624064e-06	ci right 1.163892e-05	k: 13	n:1910000
Cons ci ratio: 4.682748e-02	ci left: 3.569884e-03	ci right 3.741574e-03	k: 6981	n:1910000
KS ci ratio: 1.612223e-01	ci left: 2.844781e-04	ci right 3.348583e-04	k: 590	n:1910000
PPP2R2B   1910000 perm   1689 sec   (1131 perm/sec)   p_kst 3.089005e-04   p_cons 3.654974e-03   p_joint 6.806283e-06

Joint ci ratio: 1.047660e+00	ci left: 3.605188e-06	ci right 1.157830e-05	k: 13	n:1920000
Cons ci ratio: 4.668720e-02	ci left: 3.572910e-03	ci right 3.744217e-03	k: 7023	n:1920000
KS ci ratio: 1.608146e-01	ci left: 2.844960e-04	ci right 3.347397e-04	k: 593	n:1920000
PPP2R2B   1920000 perm   1705 sec   (1126 perm/sec)   p_kst 3.088542e-04   p_cons 3.657813e-03   p_joint 6.770833e-06

Joint ci ratio: 1.012135e+00	ci left: 3.965772e-06	ci right 1.217076e-05	k: 14	n:1930000
Cons ci ratio: 4.657796e-02	ci left: 3.571297e-03	ci right 3.742115e-03	k: 7056	n:1930000
KS ci ratio: 1.604101e-01	ci left: 2.845139e-04	ci right 3.346221e-04	k: 596	n:1930000
PPP2R2B   1930000 perm   1720 sec   (1122 perm/sec)   p_kst 3.088083e-04   p_cons 3.655959e-03   p_joint 7.253886e-06

Joint ci ratio: 1.012135e+00	ci left: 3.945330e-06	ci right 1.210802e-05	k: 14	n:1940000
Cons ci ratio: 4.643990e-02	ci left: 3.574286e-03	ci right 3.744727e-03	k: 7098	n:1940000
KS ci ratio: 1.598753e-01	ci left: 2.850265e-04	ci right 3.350416e-04	k: 600	n:1940000
PPP2R2B   1940000 perm   1737 sec   (1117 perm/sec)   p_kst 3.092784e-04   p_cons 3.658763e-03   p_joint 7.216495e-06

Joint ci ratio: 1.012135e+00	ci left: 3.925098e-06	ci right 1.204593e-05	k: 14	n:1950000
Cons ci ratio: 4.633890e-02	ci left: 3.571669e-03	ci right 3.741605e-03	k: 7129	n:1950000
KS ci ratio: 1.594778e-01	ci left: 2.850419e-04	ci right 3.349234e-04	k: 603	n:1950000
PPP2R2B   1950000 perm   1752 sec   (1113 perm/sec)   p_kst 3.092308e-04   p_cons 3.655897e-03   p_joint 7.179487e-06

Joint ci ratio: 1.012136e+00	ci left: 3.905072e-06	ci right 1.198447e-05	k: 14	n:1960000
Cons ci ratio: 4.620296e-02	ci left: 3.574627e-03	ci right 3.744191e-03	k: 7171	n:1960000
KS ci ratio: 1.593460e-01	ci left: 2.840774e-04	ci right 3.337451e-04	k: 604	n:1960000
PPP2R2B   1960000 perm   1770 sec   (1107 perm/sec)   p_kst 3.081633e-04   p_cons 3.658673e-03   p_joint 7.142857e-06

Joint ci ratio: 1.012136e+00	ci left: 3.885249e-06	ci right 1.192364e-05	k: 14	n:1970000
Cons ci ratio: 4.603939e-02	ci left: 3.582072e-03	ci right 3.751372e-03	k: 7222	n:1970000
KS ci ratio: 1.585616e-01	ci left: 2.855599e-04	ci right 3.352177e-04	k: 610	n:1970000
PPP2R2B   1970000 perm   1787 sec   (1103 perm/sec)   p_kst 3.096447e-04   p_cons 3.665990e-03   p_joint 7.106599e-06

Joint ci ratio: 1.012136e+00	ci left: 3.865627e-06	ci right 1.186342e-05	k: 14	n:1980000
Cons ci ratio: 4.591239e-02	ci left: 3.583951e-03	ci right 3.752860e-03	k: 7262	n:1980000
KS ci ratio: 1.580451e-01	ci left: 2.860579e-04	ci right 3.356248e-04	k: 614	n:1980000
PPP2R2B   1980000 perm   1804 sec   (1098 perm/sec)   p_kst 3.101010e-04   p_cons 3.667677e-03   p_joint 7.070707e-06

Joint ci ratio: 1.012136e+00	ci left: 3.846201e-06	ci right 1.180380e-05	k: 14	n:1990000
Cons ci ratio: 4.582425e-02	ci left: 3.579850e-03	ci right 3.748233e-03	k: 7290	n:1990000
KS ci ratio: 1.576610e-01	ci left: 2.860684e-04	ci right 3.355053e-04	k: 617	n:1990000
PPP2R2B   1990000 perm   1820 sec   (1094 perm/sec)   p_kst 3.100503e-04   p_cons 3.663317e-03   p_joint 7.035176e-06

Joint ci ratio: 1.012136e+00	ci left: 3.826970e-06	ci right 1.174478e-05	k: 14	n:2000000
Cons ci ratio: 4.572094e-02	ci left: 3.578262e-03	ci right 3.746181e-03	k: 7323	n:2000000
KS ci ratio: 1.574065e-01	ci left: 2.855987e-04	ci right 3.348672e-04	k: 619	n:2000000
PPP2R2B   2000000 perm   1837 sec   (1089 perm/sec)   p_kst 3.095000e-04   p_cons 3.661500e-03   p_joint 7.000000e-06

Joint ci ratio: 1.012136e+00	ci left: 3.807931e-06	ci right 1.168635e-05	k: 14	n:2010000
Cons ci ratio: 4.560899e-02	ci left: 3.578165e-03	ci right 3.745658e-03	k: 7359	n:2010000
KS ci ratio: 1.569012e-01	ci left: 2.860896e-04	ci right 3.352694e-04	k: 623	n:2010000
PPP2R2B   2010000 perm   1854 sec   (1084 perm/sec)   p_kst 3.099502e-04   p_cons 3.661194e-03   p_joint 6.965174e-06

Joint ci ratio: 1.012136e+00	ci left: 3.789079e-06	ci right 1.162850e-05	k: 14	n:2020000
Cons ci ratio: 4.550095e-02	ci left: 3.577581e-03	ci right 3.744639e-03	k: 7394	n:2020000
KS ci ratio: 1.564007e-01	ci left: 2.865759e-04	ci right 3.356674e-04	k: 627	n:2020000
PPP2R2B   2020000 perm   1870 sec   (1080 perm/sec)   p_kst 3.103960e-04   p_cons 3.660396e-03   p_joint 6.930693e-06

Joint ci ratio: 9.799959e-01	ci left: 4.135664e-06	ci right 1.218727e-05	k: 15	n:2030000
Cons ci ratio: 4.539981e-02	ci left: 3.576029e-03	ci right 3.742634e-03	k: 7427	n:2030000
KS ci ratio: 1.557817e-01	ci left: 2.875310e-04	ci right 3.365730e-04	k: 632	n:2030000
PPP2R2B   2030000 perm   1887 sec   (1076 perm/sec)   p_kst 3.113300e-04   p_cons 3.658621e-03   p_joint 7.389163e-06

Joint ci ratio: 9.799959e-01	ci left: 4.115391e-06	ci right 1.212753e-05	k: 15	n:2040000
Cons ci ratio: 4.529019e-02	ci left: 3.575946e-03	ci right 3.742135e-03	k: 7463	n:2040000
KS ci ratio: 1.554138e-01	ci left: 2.875349e-04	ci right 3.364510e-04	k: 635	n:2040000
PPP2R2B   2040000 perm   1904 sec   (1072 perm/sec)   p_kst 3.112745e-04   p_cons 3.658333e-03   p_joint 7.352941e-06

Joint ci ratio: 9.799959e-01	ci left: 4.095316e-06	ci right 1.206837e-05	k: 15	n:2050000
Cons ci ratio: 4.518742e-02	ci left: 3.574900e-03	ci right 3.740653e-03	k: 7497	n:2050000
KS ci ratio: 1.551701e-01	ci left: 2.870700e-04	ci right 3.358233e-04	k: 637	n:2050000
PPP2R2B   2050000 perm   1921 sec   (1067 perm/sec)   p_kst 3.107317e-04   p_cons 3.657073e-03   p_joint 7.317073e-06

Joint ci ratio: 9.799960e-01	ci left: 4.075436e-06	ci right 1.200979e-05	k: 15	n:2060000
Cons ci ratio: 4.507333e-02	ci left: 3.575785e-03	ci right 3.741149e-03	k: 7535	n:2060000
KS ci ratio: 1.548066e-01	ci left: 2.870763e-04	ci right 3.357058e-04	k: 640	n:2060000
PPP2R2B   2060000 perm   1939 sec   (1063 perm/sec)   p_kst 3.106796e-04   p_cons 3.657767e-03   p_joint 7.281553e-06

Joint ci ratio: 9.799960e-01	ci left: 4.055748e-06	ci right 1.195177e-05	k: 15	n:2070000
Cons ci ratio: 4.496607e-02	ci left: 3.575706e-03	ci right 3.740663e-03	k: 7571	n:2070000
KS ci ratio: 1.548067e-01	ci left: 2.856894e-04	ci right 3.340840e-04	k: 640	n:2070000
PPP2R2B   2070000 perm   1956 sec   (1058 perm/sec)   p_kst 3.091787e-04   p_cons 3.657488e-03   p_joint 7.246377e-06

Joint ci ratio: 9.799960e-01	ci left: 4.036249e-06	ci right 1.189431e-05	k: 15	n:2080000
Cons ci ratio: 4.485364e-02	ci left: 3.576579e-03	ci right 3.741154e-03	k: 7609	n:2080000
KS ci ratio: 1.544457e-01	ci left: 2.857024e-04	ci right 3.339759e-04	k: 643	n:2080000
PPP2R2B   2080000 perm   1973 sec   (1054 perm/sec)   p_kst 3.091346e-04   p_cons 3.658173e-03   p_joint 7.211538e-06

Joint ci ratio: 9.799960e-01	ci left: 4.016937e-06	ci right 1.183740e-05	k: 15	n:2090000
Cons ci ratio: 4.476556e-02	ci left: 3.573660e-03	ci right 3.737768e-03	k: 7639	n:2090000
KS ci ratio: 1.539682e-01	ci left: 2.861754e-04	ci right 3.343656e-04	k: 647	n:2090000
PPP2R2B   2090000 perm   1991 sec   (1050 perm/sec)   p_kst 3.095694e-04   p_cons 3.655024e-03   p_joint 7.177033e-06

Joint ci ratio: 9.507356e-01	ci left: 4.354950e-06	ci right 1.237283e-05	k: 16	n:2100000
Cons ci ratio: 4.464588e-02	ci left: 3.575948e-03	ci right 3.739711e-03	k: 7680	n:2100000
KS ci ratio: 1.534952e-01	ci left: 2.866442e-04	ci right 3.347514e-04	k: 651	n:2100000
PPP2R2B   2100000 perm   2008 sec   (1046 perm/sec)   p_kst 3.100000e-04   p_cons 3.657143e-03   p_joint 7.619048e-06

Joint ci ratio: 9.507356e-01	ci left: 4.334310e-06	ci right 1.231419e-05	k: 16	n:2110000
Cons ci ratio: 4.454163e-02	ci left: 3.575872e-03	ci right 3.739239e-03	k: 7716	n:2110000
KS ci ratio: 1.534953e-01	ci left: 2.852857e-04	ci right 3.331649e-04	k: 651	n:2110000
PPP2R2B   2110000 perm   2026 sec   (1041 perm/sec)   p_kst 3.085308e-04   p_cons 3.656872e-03   p_joint 7.582938e-06

Joint ci ratio: 9.507356e-01	ci left: 4.313866e-06	ci right 1.225610e-05	k: 16	n:2120000
Cons ci ratio: 4.444098e-02	ci left: 3.575330e-03	ci right 3.738295e-03	k: 7751	n:2120000
KS ci ratio: 1.531434e-01	ci left: 2.853008e-04	ci right 3.330627e-04	k: 654	n:2120000
PPP2R2B   2120000 perm   2044 sec   (1037 perm/sec)   p_kst 3.084906e-04   p_cons 3.656132e-03   p_joint 7.547170e-06

Joint ci ratio: 9.239487e-01	ci left: 4.649362e-06	ci right 1.277868e-05	k: 17	n:2130000
Cons ci ratio: 4.430676e-02	ci left: 3.580366e-03	ci right 3.743054e-03	k: 7798	n:2130000
KS ci ratio: 1.526779e-01	ci left: 2.857674e-04	ci right 3.334488e-04	k: 658	n:2130000
PPP2R2B   2130000 perm   2062 sec   (1033 perm/sec)   p_kst 3.089202e-04   p_cons 3.661033e-03   p_joint 7.981221e-06

Joint ci ratio: 9.239488e-01	ci left: 4.627636e-06	ci right 1.271896e-05	k: 17	n:2140000
Cons ci ratio: 4.419071e-02	ci left: 3.582582e-03	ci right 3.744934e-03	k: 7839	n:2140000
KS ci ratio: 1.524467e-01	ci left: 2.853310e-04	ci right 3.328608e-04	k: 660	n:2140000
PPP2R2B   2140000 perm   2080 sec   (1029 perm/sec)   p_kst 3.084112e-04   p_cons 3.663084e-03   p_joint 7.943925e-06

Joint ci ratio: 9.239488e-01	ci left: 4.606112e-06	ci right 1.265981e-05	k: 17	n:2150000
Cons ci ratio: 4.408399e-02	ci left: 3.583398e-03	ci right 3.745385e-03	k: 7877	n:2150000
KS ci ratio: 1.518734e-01	ci left: 2.862409e-04	ci right 3.337267e-04	k: 665	n:2150000
PPP2R2B   2150000 perm   2098 sec   (1025 perm/sec)   p_kst 3.093023e-04   p_cons 3.663721e-03   p_joint 7.906977e-06

Joint ci ratio: 9.239488e-01	ci left: 4.584787e-06	ci right 1.260120e-05	k: 17	n:2160000
Cons ci ratio: 4.399477e-02	ci left: 3.581460e-03	ci right 3.743023e-03	k: 7909	n:2160000
KS ci ratio: 1.517595e-01	ci left: 2.853611e-04	ci right 3.326622e-04	k: 666	n:2160000
PPP2R2B   2160000 perm   2116 sec   (1021 perm/sec)   p_kst 3.083333e-04   p_cons 3.661574e-03   p_joint 7.870370e-06

Joint ci ratio: 9.239488e-01	ci left: 4.563659e-06	ci right 1.254313e-05	k: 17	n:2170000
Cons ci ratio: 4.388669e-02	ci left: 3.582730e-03	ci right 3.743944e-03	k: 7948	n:2170000
KS ci ratio: 1.513065e-01	ci left: 2.858195e-04	ci right 3.330423e-04	k: 670	n:2170000
PPP2R2B   2170000 perm   2134 sec   (1017 perm/sec)   p_kst 3.087558e-04   p_cons 3.662673e-03   p_joint 7.834101e-06

Joint ci ratio: 9.239488e-01	ci left: 4.542725e-06	ci right 1.248559e-05	k: 17	n:2180000
Cons ci ratio: 4.377940e-02	ci left: 3.583990e-03	ci right 3.744856e-03	k: 7987	n:2180000
KS ci ratio: 1.506344e-01	ci left: 2.871567e-04	ci right 3.343708e-04	k: 676	n:2180000
PPP2R2B   2180000 perm   2152 sec   (1013 perm/sec)   p_kst 3.100917e-04   p_cons 3.663761e-03   p_joint 7.798165e-06

Joint ci ratio: 9.239489e-01	ci left: 4.521982e-06	ci right 1.242858e-05	k: 17	n:2190000
Cons ci ratio: 4.362927e-02	ci left: 3.592465e-03	ci right 3.753144e-03	k: 8042	n:2190000
KS ci ratio: 1.500811e-01	ci left: 2.880427e-04	ci right 3.352129e-04	k: 681	n:2190000
PPP2R2B   2190000 perm   2170 sec   (1009 perm/sec)   p_kst 3.109589e-04   p_cons 3.672146e-03   p_joint 7.762557e-06

Joint ci ratio: 9.239489e-01	ci left: 4.501427e-06	ci right 1.237208e-05	k: 17	n:2200000
Cons ci ratio: 4.354008e-02	ci left: 3.590972e-03	ci right 3.751248e-03	k: 8075	n:2200000
KS ci ratio: 1.498616e-01	ci left: 2.876084e-04	ci right 3.346324e-04	k: 683	n:2200000
PPP2R2B   2200000 perm   2188 sec   (1005 perm/sec)   p_kst 3.104545e-04   p_cons 3.670455e-03   p_joint 7.727273e-06

Joint ci ratio: 9.239489e-01	ci left: 4.481059e-06	ci right 1.231610e-05	k: 17	n:2210000
Cons ci ratio: 4.346758e-02	ci left: 3.586807e-03	ci right 3.746625e-03	k: 8102	n:2210000
KS ci ratio: 1.492085e-01	ci left: 2.889204e-04	ci right 3.359347e-04	k: 689	n:2210000
PPP2R2B   2210000 perm   2207 sec   (1002 perm/sec)   p_kst 3.117647e-04   p_cons 3.666063e-03   p_joint 7.692308e-06

Joint ci ratio: 9.239489e-01	ci left: 4.460874e-06	ci right 1.226062e-05	k: 17	n:2220000
Cons ci ratio: 4.337937e-02	ci left: 3.585354e-03	ci right 3.744774e-03	k: 8135	n:2220000
KS ci ratio: 1.487779e-01	ci left: 2.893536e-04	ci right 3.362903e-04	k: 693	n:2220000
PPP2R2B   2220000 perm   2224 sec   (998 perm/sec)   p_kst 3.121622e-04   p_cons 3.664414e-03   p_joint 7.657658e-06

Joint ci ratio: 9.239489e-01	ci left: 4.440870e-06	ci right 1.220564e-05	k: 17	n:2230000
Cons ci ratio: 4.328904e-02	ci left: 3.584357e-03	ci right 3.743393e-03	k: 8169	n:2230000
KS ci ratio: 1.481388e-01	ci left: 2.906467e-04	ci right 3.375728e-04	k: 699	n:2230000
PPP2R2B   2230000 perm   2243 sec   (994 perm/sec)   p_kst 3.134529e-04   p_cons 3.663229e-03   p_joint 7.623318e-06

Joint ci ratio: 9.239489e-01	ci left: 4.421045e-06	ci right 1.215115e-05	k: 17	n:2240000
Cons ci ratio: 4.317814e-02	ci left: 3.586903e-03	ci right 3.745634e-03	k: 8211	n:2240000
KS ci ratio: 1.476125e-01	ci left: 2.914987e-04	ci right 3.383804e-04	k: 704	n:2240000
PPP2R2B   2240000 perm   2261 sec   (991 perm/sec)   p_kst 3.142857e-04   p_cons 3.665625e-03   p_joint 7.589286e-06

Joint ci ratio: 9.239490e-01	ci left: 4.401396e-06	ci right 1.209715e-05	k: 17	n:2250000
Cons ci ratio: 4.308644e-02	ci left: 3.586349e-03	ci right 3.744710e-03	k: 8246	n:2250000
KS ci ratio: 1.476126e-01	ci left: 2.902031e-04	ci right 3.368765e-04	k: 704	n:2250000
PPP2R2B   2250000 perm   2280 sec   (987 perm/sec)   p_kst 3.128889e-04   p_cons 3.664889e-03   p_joint 7.555556e-06

Joint ci ratio: 9.239490e-01	ci left: 4.381920e-06	ci right 1.204362e-05	k: 17	n:2260000
Cons ci ratio: 4.298490e-02	ci left: 3.587551e-03	ci right 3.745583e-03	k: 8285	n:2260000
KS ci ratio: 1.469883e-01	ci left: 2.914761e-04	ci right 3.381385e-04	k: 710	n:2260000
PPP2R2B   2260000 perm   2298 sec   (983 perm/sec)   p_kst 3.141593e-04   p_cons 3.665929e-03   p_joint 7.522124e-06

Joint ci ratio: 9.239490e-01	ci left: 4.362617e-06	ci right 1.199057e-05	k: 17	n:2270000
Cons ci ratio: 4.288407e-02	ci left: 3.588743e-03	ci right 3.746448e-03	k: 8324	n:2270000
KS ci ratio: 1.465766e-01	ci left: 2.918895e-04	ci right 3.384757e-04	k: 714	n:2270000
PPP2R2B   2270000 perm   2317 sec   (980 perm/sec)   p_kst 3.145374e-04   p_cons 3.666960e-03   p_joint 7.488987e-06

Joint ci ratio: 9.239490e-01	ci left: 4.343482e-06	ci right 1.193798e-05	k: 17	n:2280000
Cons ci ratio: 4.277882e-02	ci left: 3.590793e-03	ci right 3.748191e-03	k: 8365	n:2280000
KS ci ratio: 1.462700e-01	ci left: 2.918768e-04	ci right 3.383551e-04	k: 717	n:2280000
PPP2R2B   2280000 perm   2336 sec   (976 perm/sec)   p_kst 3.144737e-04   p_cons 3.668860e-03   p_joint 7.456140e-06

Joint ci ratio: 9.239490e-01	ci left: 4.324515e-06	ci right 1.188585e-05	k: 17	n:2290000
Cons ci ratio: 4.267179e-02	ci left: 3.593258e-03	ci right 3.750360e-03	k: 8407	n:2290000
KS ci ratio: 1.459654e-01	ci left: 2.918644e-04	ci right 3.382355e-04	k: 720	n:2290000
PPP2R2B   2290000 perm   2355 sec   (972 perm/sec)   p_kst 3.144105e-04   p_cons 3.671179e-03   p_joint 7.423581e-06

Joint ci ratio: 9.239490e-01	ci left: 4.305713e-06	ci right 1.183417e-05	k: 17	n:2300000
Cons ci ratio: 4.259086e-02	ci left: 3.591400e-03	ci right 3.748115e-03	k: 8439	n:2300000
KS ci ratio: 1.456627e-01	ci left: 2.918522e-04	ci right 3.381168e-04	k: 723	n:2300000
PPP2R2B   2300000 perm   2374 sec   (969 perm/sec)   p_kst 3.143478e-04   p_cons 3.669130e-03   p_joint 7.391304e-06

Joint ci ratio: 9.239491e-01	ci left: 4.287073e-06	ci right 1.178294e-05	k: 17	n:2310000
Cons ci ratio: 4.251040e-02	ci left: 3.589558e-03	ci right 3.745890e-03	k: 8471	n:2310000
KS ci ratio: 1.455623e-01	ci left: 2.910059e-04	ci right 3.371018e-04	k: 724	n:2310000
PPP2R2B   2310000 perm   2393 sec   (965 perm/sec)   p_kst 3.134199e-04   p_cons 3.667100e-03   p_joint 7.359307e-06

Joint ci ratio: 9.239491e-01	ci left: 4.268595e-06	ci right 1.173215e-05	k: 17	n:2320000
Cons ci ratio: 4.242287e-02	ci left: 3.589011e-03	ci right 3.744990e-03	k: 8506	n:2320000
KS ci ratio: 1.454620e-01	ci left: 2.901669e-04	ci right 3.360955e-04	k: 725	n:2320000
PPP2R2B   2320000 perm   2412 sec   (962 perm/sec)   p_kst 3.125000e-04   p_cons 3.666379e-03   p_joint 7.327586e-06

Joint ci ratio: 9.239491e-01	ci left: 4.250274e-06	ci right 1.168180e-05	k: 17	n:2330000
Cons ci ratio: 4.233091e-02	ci left: 3.589320e-03	ci right 3.744965e-03	k: 8543	n:2330000
KS ci ratio: 1.451624e-01	ci left: 2.901623e-04	ci right 3.359873e-04	k: 728	n:2330000
PPP2R2B   2330000 perm   2431 sec   (959 perm/sec)   p_kst 3.124464e-04   p_cons 3.666524e-03   p_joint 7.296137e-06

Joint ci ratio: 9.239491e-01	ci left: 4.232111e-06	ci right 1.163187e-05	k: 17	n:2340000
Cons ci ratio: 4.224202e-02	ci left: 3.589203e-03	ci right 3.744508e-03	k: 8579	n:2340000
KS ci ratio: 1.447658e-01	ci left: 2.905697e-04	ci right 3.363229e-04	k: 732	n:2340000
PPP2R2B   2340000 perm   2450 sec   (955 perm/sec)   p_kst 3.128205e-04   p_cons 3.666239e-03   p_joint 7.264957e-06

Joint ci ratio: 8.993058e-01	ci left: 4.539555e-06	ci right 1.210540e-05	k: 18	n:2350000
Cons ci ratio: 4.214141e-02	ci left: 3.591192e-03	ci right 3.746205e-03	k: 8620	n:2350000
KS ci ratio: 1.442745e-01	ci left: 2.913839e-04	ci right 3.370962e-04	k: 737	n:2350000
PPP2R2B   2350000 perm   2469 sec   (952 perm/sec)   p_kst 3.136170e-04   p_cons 3.668085e-03   p_joint 7.659574e-06

Joint ci ratio: 8.765347e-01	ci left: 4.847143e-06	ci right 1.257237e-05	k: 19	n:2360000
Cons ci ratio: 4.204396e-02	ci left: 3.592746e-03	ci right 3.747459e-03	k: 8660	n:2360000
KS ci ratio: 1.437882e-01	ci left: 2.921916e-04	ci right 3.378628e-04	k: 742	n:2360000
PPP2R2B   2360000 perm   2488 sec   (948 perm/sec)   p_kst 3.144068e-04   p_cons 3.669492e-03   p_joint 8.050847e-06

Joint ci ratio: 8.765348e-01	ci left: 4.826691e-06	ci right 1.251932e-05	k: 19	n:2370000
Cons ci ratio: 4.194234e-02	ci left: 3.595122e-03	ci right 3.749554e-03	k: 8702	n:2370000
KS ci ratio: 1.434027e-01	ci left: 2.925858e-04	ci right 3.381855e-04	k: 746	n:2370000
PPP2R2B   2370000 perm   2508 sec   (945 perm/sec)   p_kst 3.147679e-04   p_cons 3.671730e-03   p_joint 8.016878e-06

Joint ci ratio: 8.765348e-01	ci left: 4.806410e-06	ci right 1.246672e-05	k: 19	n:2380000
Cons ci ratio: 4.184625e-02	ci left: 3.596648e-03	ci right 3.750782e-03	k: 8742	n:2380000
KS ci ratio: 1.429251e-01	ci left: 2.933821e-04	ci right 3.389406e-04	k: 751	n:2380000
PPP2R2B   2380000 perm   2528 sec   (942 perm/sec)   p_kst 3.155462e-04   p_cons 3.673109e-03   p_joint 7.983193e-06

Joint ci ratio: 8.765348e-01	ci left: 4.786300e-06	ci right 1.241456e-05	k: 19	n:2390000
Cons ci ratio: 4.176992e-02	ci left: 3.594848e-03	ci right 3.748618e-03	k: 8774	n:2390000
KS ci ratio: 1.424522e-01	ci left: 2.941719e-04	ci right 3.396891e-04	k: 756	n:2390000
PPP2R2B   2390000 perm   2547 sec   (938 perm/sec)   p_kst 3.163180e-04   p_cons 3.671130e-03   p_joint 7.949791e-06

Joint ci ratio: 8.765348e-01	ci left: 4.766357e-06	ci right 1.236283e-05	k: 19	n:2400000
Cons ci ratio: 4.166553e-02	ci left: 3.598012e-03	ci right 3.751523e-03	k: 8818	n:2400000
KS ci ratio: 1.420773e-01	ci left: 2.945535e-04	ci right 3.399997e-04	k: 760	n:2400000
PPP2R2B   2400000 perm   2566 sec   (935 perm/sec)   p_kst 3.166667e-04   p_cons 3.674167e-03   p_joint 7.916667e-06

Joint ci ratio: 8.765348e-01	ci left: 4.746580e-06	ci right 1.231153e-05	k: 19	n:2410000
Cons ci ratio: 4.158783e-02	ci left: 3.596633e-03	ci right 3.749792e-03	k: 8851	n:2410000
KS ci ratio: 1.417054e-01	ci left: 2.949322e-04	ci right 3.403076e-04	k: 764	n:2410000
PPP2R2B   2410000 perm   2586 sec   (932 perm/sec)   p_kst 3.170124e-04   p_cons 3.672614e-03   p_joint 7.883817e-06

Joint ci ratio: 8.765348e-01	ci left: 4.726966e-06	ci right 1.226066e-05	k: 19	n:2420000
Cons ci ratio: 4.148479e-02	ci left: 3.599764e-03	ci right 3.752668e-03	k: 8895	n:2420000
KS ci ratio: 1.415205e-01	ci left: 2.945106e-04	ci right 3.397570e-04	k: 766	n:2420000
PPP2R2B   2420000 perm   2607 sec   (928 perm/sec)   p_kst 3.165289e-04   p_cons 3.675620e-03   p_joint 7.851240e-06

Joint ci ratio: 8.765349e-01	ci left: 4.707513e-06	ci right 1.221020e-05	k: 19	n:2430000
Cons ci ratio: 4.139878e-02	ci left: 3.600018e-03	ci right 3.752609e-03	k: 8932	n:2430000
KS ci ratio: 1.410614e-01	ci left: 2.952835e-04	ci right 3.404892e-04	k: 771	n:2430000
PPP2R2B   2430000 perm   2627 sec   (925 perm/sec)   p_kst 3.172840e-04   p_cons 3.675720e-03   p_joint 7.818930e-06

Joint ci ratio: 8.765349e-01	ci left: 4.688220e-06	ci right 1.216016e-05	k: 19	n:2440000
Cons ci ratio: 4.129252e-02	ci left: 3.603922e-03	ci right 3.756276e-03	k: 8978	n:2440000
KS ci ratio: 1.406974e-01	ci left: 2.956549e-04	ci right 3.407908e-04	k: 775	n:2440000
PPP2R2B   2440000 perm   2647 sec   (922 perm/sec)   p_kst 3.176230e-04   p_cons 3.679508e-03   p_joint 7.786885e-06

Joint ci ratio: 8.765349e-01	ci left: 4.669084e-06	ci right 1.211053e-05	k: 19	n:2450000
Cons ci ratio: 4.120083e-02	ci left: 3.605370e-03	ci right 3.757439e-03	k: 9018	n:2450000
KS ci ratio: 1.402462e-01	ci left: 2.964172e-04	ci right 3.415123e-04	k: 780	n:2450000
PPP2R2B   2450000 perm   2667 sec   (919 perm/sec)   p_kst 3.183673e-04   p_cons 3.680816e-03   p_joint 7.755102e-06

Joint ci ratio: 8.765349e-01	ci left: 4.650104e-06	ci right 1.206130e-05	k: 19	n:2460000
Cons ci ratio: 4.113025e-02	ci left: 3.603186e-03	ci right 3.754897e-03	k: 9049	n:2460000
KS ci ratio: 1.396218e-01	ci left: 2.979582e-04	ci right 3.430691e-04	k: 787	n:2460000
PPP2R2B   2460000 perm   2688 sec   (915 perm/sec)   p_kst 3.199187e-04   p_cons 3.678455e-03   p_joint 7.723577e-06

Joint ci ratio: 8.765349e-01	ci left: 4.631278e-06	ci right 1.201247e-05	k: 19	n:2470000
Cons ci ratio: 4.105550e-02	ci left: 3.601821e-03	ci right 3.753192e-03	k: 9082	n:2470000
KS ci ratio: 1.395334e-01	ci left: 2.971426e-04	ci right 3.420992e-04	k: 788	n:2470000
PPP2R2B   2470000 perm   2708 sec   (912 perm/sec)   p_kst 3.190283e-04   p_cons 3.676923e-03   p_joint 7.692308e-06

Joint ci ratio: 8.765349e-01	ci left: 4.612603e-06	ci right 1.196403e-05	k: 19	n:2480000
Cons ci ratio: 4.098566e-02	ci left: 3.599669e-03	ci right 3.750687e-03	k: 9113	n:2480000
KS ci ratio: 1.392689e-01	ci left: 2.971120e-04	ci right 3.419716e-04	k: 791	n:2480000
PPP2R2B   2480000 perm   2728 sec   (909 perm/sec)   p_kst 3.189516e-04   p_cons 3.674597e-03   p_joint 7.661290e-06

Joint ci ratio: 7.279213e-01	ci left: 7.472220e-06	ci right 1.625209e-05	k: 28	n:2490000
Cons ci ratio: 4.086688e-02	ci left: 3.606281e-03	ci right 3.757126e-03	k: 9166	n:2490000
KS ci ratio: 1.388313e-01	ci left: 2.978569e-04	ci right 3.426760e-04	k: 796	n:2490000
PPP2R2B   2490000 perm   2748 sec   (906 perm/sec)   p_kst 3.196787e-04   p_cons 3.681124e-03   p_joint 1.124498e-05

Joint ci ratio: 7.156864e-01	ci left: 7.768715e-06	ci right 1.665949e-05	k: 29	n:2500000
Cons ci ratio: 4.079132e-02	ci left: 3.605317e-03	ci right 3.755837e-03	k: 9200	n:2500000
KS ci ratio: 1.385707e-01	ci left: 2.978238e-04	ci right 3.425469e-04	k: 799	n:2500000
PPP2R2B   2500000 perm   2769 sec   (903 perm/sec)   p_kst 3.196000e-04   p_cons 3.680000e-03   p_joint 1.160000e-05

Joint ci ratio: 7.156864e-01	ci left: 7.737764e-06	ci right 1.659312e-05	k: 29	n:2510000
Cons ci ratio: 4.071398e-02	ci left: 3.604755e-03	ci right 3.754959e-03	k: 9235	n:2510000
KS ci ratio: 1.380539e-01	ci left: 2.989450e-04	ci right 3.436553e-04	k: 805	n:2510000
PPP2R2B   2510000 perm   2788 sec   (900 perm/sec)   p_kst 3.207171e-04   p_cons 3.679283e-03   p_joint 1.155378e-05

Joint ci ratio: 7.156864e-01	ci left: 7.707059e-06	ci right 1.652727e-05	k: 29	n:2520000
Cons ci ratio: 4.062168e-02	ci left: 3.606948e-03	ci right 3.756895e-03	k: 9277	n:2520000
KS ci ratio: 1.378830e-01	ci left: 2.985250e-04	ci right 3.431126e-04	k: 807	n:2520000
PPP2R2B   2520000 perm   2809 sec   (897 perm/sec)   p_kst 3.202381e-04   p_cons 3.681349e-03   p_joint 1.150794e-05

Joint ci ratio: 7.156864e-01	ci left: 7.676596e-06	ci right 1.646195e-05	k: 29	n:2530000
Cons ci ratio: 4.053000e-02	ci left: 3.609123e-03	ci right 3.758815e-03	k: 9319	n:2530000
KS ci ratio: 1.372895e-01	ci left: 3.000166e-04	ci right 3.446184e-04	k: 814	n:2530000
PPP2R2B   2530000 perm   2829 sec   (894 perm/sec)   p_kst 3.217391e-04   p_cons 3.683399e-03   p_joint 1.146245e-05

Joint ci ratio: 7.156864e-01	ci left: 7.646373e-06	ci right 1.639714e-05	k: 29	n:2540000
Cons ci ratio: 4.045196e-02	ci left: 3.608944e-03	ci right 3.758333e-03	k: 9355	n:2540000
KS ci ratio: 1.372054e-01	ci left: 2.992156e-04	ci right 3.436688e-04	k: 815	n:2540000
PPP2R2B   2540000 perm   2849 sec   (891 perm/sec)   p_kst 3.208661e-04   p_cons 3.683071e-03   p_joint 1.141732e-05

Joint ci ratio: 7.156865e-01	ci left: 7.616387e-06	ci right 1.633284e-05	k: 29	n:2550000
Cons ci ratio: 4.036789e-02	ci left: 3.609931e-03	ci right 3.759043e-03	k: 9394	n:2550000
KS ci ratio: 1.367869e-01	ci left: 2.999358e-04	ci right 3.443491e-04	k: 820	n:2550000
PPP2R2B   2550000 perm   2870 sec   (889 perm/sec)   p_kst 3.215686e-04   p_cons 3.683922e-03   p_joint 1.137255e-05

Joint ci ratio: 7.156865e-01	ci left: 7.586636e-06	ci right 1.626904e-05	k: 29	n:2560000
Cons ci ratio: 4.028006e-02	ci left: 3.611684e-03	ci right 3.760536e-03	k: 9435	n:2560000
KS ci ratio: 1.366206e-01	ci left: 2.995187e-04	ci right 3.438119e-04	k: 822	n:2560000
PPP2R2B   2560000 perm   2892 sec   (885 perm/sec)   p_kst 3.210937e-04   p_cons 3.685547e-03   p_joint 1.132812e-05

Joint ci ratio: 7.156865e-01	ci left: 7.557116e-06	ci right 1.620573e-05	k: 29	n:2570000
Cons ci ratio: 4.019919e-02	ci left: 3.612268e-03	ci right 3.760838e-03	k: 9473	n:2570000
KS ci ratio: 1.365378e-01	ci left: 2.987291e-04	ci right 3.428765e-04	k: 823	n:2570000
PPP2R2B   2570000 perm   2913 sec   (882 perm/sec)   p_kst 3.202335e-04   p_cons 3.685992e-03   p_joint 1.128405e-05

Joint ci ratio: 6.929602e-01	ci left: 8.163966e-06	ci right 1.705501e-05	k: 31	n:2580000
Cons ci ratio: 4.010823e-02	ci left: 3.614766e-03	ci right 3.763095e-03	k: 9516	n:2580000
KS ci ratio: 1.362899e-01	ci left: 2.986943e-04	ci right 3.427500e-04	k: 826	n:2580000
PPP2R2B   2580000 perm   2934 sec   (879 perm/sec)   p_kst 3.201550e-04   p_cons 3.688372e-03   p_joint 1.201550e-05

Joint ci ratio: 6.929602e-01	ci left: 8.132445e-06	ci right 1.698916e-05	k: 31	n:2590000
Cons ci ratio: 4.002208e-02	ci left: 3.616481e-03	ci right 3.764555e-03	k: 9557	n:2590000
KS ci ratio: 1.362076e-01	ci left: 2.979140e-04	ci right 3.418259e-04	k: 827	n:2590000
PPP2R2B   2590000 perm   2955 sec   (876 perm/sec)   p_kst 3.193050e-04   p_cons 3.689961e-03   p_joint 1.196911e-05

Joint ci ratio: 6.929602e-01	ci left: 8.101166e-06	ci right 1.692381e-05	k: 31	n:2600000
Cons ci ratio: 3.993648e-02	ci left: 3.618183e-03	ci right 3.766002e-03	k: 9598	n:2600000
KS ci ratio: 1.357167e-01	ci left: 2.989974e-04	ci right 3.428973e-04	k: 833	n:2600000
PPP2R2B   2600000 perm   2977 sec   (874 perm/sec)   p_kst 3.203846e-04   p_cons 3.691538e-03   p_joint 1.192308e-05

Joint ci ratio: 5.909571e-01	ci left: 1.192313e-05	ci right 2.219178e-05	k: 43	n:2610000
Cons ci ratio: 3.983278e-02	ci left: 3.623287e-03	ci right 3.770921e-03	k: 9648	n:2610000
KS ci ratio: 1.354733e-01	ci left: 2.989622e-04	ci right 3.427719e-04	k: 836	n:2610000
PPP2R2B   2610000 perm   2999 sec   (870 perm/sec)   p_kst 3.203065e-04   p_cons 3.696552e-03   p_joint 1.647510e-05

Joint ci ratio: 6.823800e-01	ci left: 8.354204e-06	ci right 1.724211e-05	k: 32	n:2620000
Cons ci ratio: 3.974839e-02	ci left: 3.624951e-03	ci right 3.772333e-03	k: 9689	n:2620000
KS ci ratio: 1.353925e-01	ci left: 2.981899e-04	ci right 3.418582e-04	k: 837	n:2620000
PPP2R2B   2620000 perm   3021 sec   (867 perm/sec)   p_kst 3.194656e-04   p_cons 3.698092e-03   p_joint 1.221374e-05

Joint ci ratio: 6.823800e-01	ci left: 8.322439e-06	ci right 1.717655e-05	k: 32	n:2630000
Cons ci ratio: 3.968500e-02	ci left: 3.622838e-03	ci right 3.769894e-03	k: 9720	n:2630000
KS ci ratio: 1.350705e-01	ci left: 2.985256e-04	ci right 3.421307e-04	k: 841	n:2630000
PPP2R2B   2630000 perm   3042 sec   (865 perm/sec)   p_kst 3.197719e-04   p_cons 3.695817e-03   p_joint 1.216730e-05

Joint ci ratio: 6.823800e-01	ci left: 8.290914e-06	ci right 1.711149e-05	k: 32	n:2640000
Cons ci ratio: 3.961377e-02	ci left: 3.622241e-03	ci right 3.769003e-03	k: 9755	n:2640000
KS ci ratio: 1.349104e-01	ci left: 2.981268e-04	ci right 3.416179e-04	k: 843	n:2640000
PPP2R2B   2640000 perm   3066 sec   (861 perm/sec)   p_kst 3.193182e-04   p_cons 3.695076e-03   p_joint 1.212121e-05

Joint ci ratio: 6.823800e-01	ci left: 8.259628e-06	ci right 1.704692e-05	k: 32	n:2650000
Cons ci ratio: 3.952064e-02	ci left: 3.625759e-03	ci right 3.772310e-03	k: 9801	n:2650000
KS ci ratio: 1.346712e-01	ci left: 2.980957e-04	ci right 3.414990e-04	k: 846	n:2650000
PPP2R2B   2650000 perm   3088 sec   (858 perm/sec)   p_kst 3.192453e-04   p_cons 3.698491e-03   p_joint 1.207547e-05

Joint ci ratio: 6.823801e-01	ci left: 8.228577e-06	ci right 1.698283e-05	k: 32	n:2660000
Cons ci ratio: 3.941411e-02	ci left: 3.631857e-03	ci right 3.778250e-03	k: 9854	n:2660000
KS ci ratio: 1.345126e-01	ci left: 2.977016e-04	ci right 3.409924e-04	k: 848	n:2660000
PPP2R2B   2660000 perm   3109 sec   (855 perm/sec)   p_kst 3.187970e-04   p_cons 3.704511e-03   p_joint 1.203008e-05

Joint ci ratio: 5.334389e-01	ci left: 1.486919e-05	ci right 2.596445e-05	k: 53	n:2670000
Cons ci ratio: 3.931440e-02	ci left: 3.636797e-03	ci right 3.783010e-03	k: 9904	n:2670000
KS ci ratio: 1.342755e-01	ci left: 2.976724e-04	ci right 3.408766e-04	k: 851	n:2670000
PPP2R2B   2670000 perm   3130 sec   (853 perm/sec)   p_kst 3.187266e-04   p_cons 3.709363e-03   p_joint 1.985019e-05

Joint ci ratio: 5.334390e-01	ci left: 1.481370e-05	ci right 2.586757e-05	k: 53	n:2680000
Cons ci ratio: 3.925704e-02	ci left: 3.633941e-03	ci right 3.779821e-03	k: 9933	n:2680000
KS ci ratio: 1.341969e-01	ci left: 2.969223e-04	ci right 3.399904e-04	k: 852	n:2680000
PPP2R2B   2680000 perm   3152 sec   (850 perm/sec)   p_kst 3.179104e-04   p_cons 3.706343e-03   p_joint 1.977612e-05

Joint ci ratio: 5.334390e-01	ci left: 1.475863e-05	ci right 2.577141e-05	k: 53	n:2690000
Cons ci ratio: 3.918808e-02	ci left: 3.633315e-03	ci right 3.778909e-03	k: 9968	n:2690000
KS ci ratio: 1.340398e-01	ci left: 2.965370e-04	ci right 3.394949e-04	k: 854	n:2690000
PPP2R2B   2690000 perm   3176 sec   (847 perm/sec)   p_kst 3.174721e-04   p_cons 3.705576e-03   p_joint 1.970260e-05

Joint ci ratio: 5.334390e-01	ci left: 1.470397e-05	ci right 2.567596e-05	k: 53	n:2700000
Cons ci ratio: 3.911359e-02	ci left: 3.633795e-03	ci right 3.779124e-03	k: 10006	n:2700000
KS ci ratio: 1.338053e-01	ci left: 2.965126e-04	ci right 3.393858e-04	k: 857	n:2700000
PPP2R2B   2700000 perm   3198 sec   (844 perm/sec)   p_kst 3.174074e-04   p_cons 3.705926e-03   p_joint 1.962963e-05

Joint ci ratio: 5.334390e-01	ci left: 1.464971e-05	ci right 2.558122e-05	k: 53	n:2710000
Cons ci ratio: 3.902394e-02	ci left: 3.637195e-03	ci right 3.782319e-03	k: 10052	n:2710000
KS ci ratio: 1.337275e-01	ci left: 2.957751e-04	ci right 3.385148e-04	k: 858	n:2710000
PPP2R2B   2710000 perm   3221 sec   (841 perm/sec)   p_kst 3.166052e-04   p_cons 3.709225e-03   p_joint 1.955720e-05

Joint ci ratio: 5.334390e-01	ci left: 1.459586e-05	ci right 2.548717e-05	k: 53	n:2720000
Cons ci ratio: 3.896395e-02	ci left: 3.635109e-03	ci right 3.779922e-03	k: 10083	n:2720000
KS ci ratio: 1.331858e-01	ci left: 2.971753e-04	ci right 3.399297e-04	k: 865	n:2720000
PPP2R2B   2720000 perm   3243 sec   (839 perm/sec)   p_kst 3.180147e-04   p_cons 3.706985e-03   p_joint 1.948529e-05

Joint ci ratio: 5.334391e-01	ci left: 1.454239e-05	ci right 2.539381e-05	k: 53	n:2730000
Cons ci ratio: 3.889267e-02	ci left: 3.635214e-03	ci right 3.779761e-03	k: 10120	n:2730000
KS ci ratio: 1.328792e-01	ci left: 2.975032e-04	ci right 3.401984e-04	k: 869	n:2730000
PPP2R2B   2730000 perm   3265 sec   (836 perm/sec)   p_kst 3.183150e-04   p_cons 3.706960e-03   p_joint 1.941392e-05

Joint ci ratio: 5.334391e-01	ci left: 1.448932e-05	ci right 2.530113e-05	k: 53	n:2740000
Cons ci ratio: 3.883137e-02	ci left: 3.633512e-03	ci right 3.777759e-03	k: 10152	n:2740000
KS ci ratio: 1.328030e-01	ci left: 2.967703e-04	ci right 3.393339e-04	k: 870	n:2740000
PPP2R2B   2740000 perm   3287 sec   (834 perm/sec)   p_kst 3.175182e-04   p_cons 3.705109e-03   p_joint 1.934307e-05

Joint ci ratio: 5.334391e-01	ci left: 1.443663e-05	ci right 2.520913e-05	k: 53	n:2750000
Cons ci ratio: 3.875126e-02	ci left: 3.635424e-03	ci right 3.779442e-03	k: 10194	n:2750000
KS ci ratio: 1.323479e-01	ci left: 2.978006e-04	ci right 3.403541e-04	k: 876	n:2750000
PPP2R2B   2750000 perm   3309 sec   (831 perm/sec)   p_kst 3.185455e-04   p_cons 3.706909e-03   p_joint 1.927273e-05

Joint ci ratio: 5.334391e-01	ci left: 1.438432e-05	ci right 2.511779e-05	k: 53	n:2760000
Cons ci ratio: 3.867734e-02	ci left: 3.636246e-03	ci right 3.780016e-03	k: 10233	n:2760000
KS ci ratio: 1.322725e-01	ci left: 2.970719e-04	ci right 3.394953e-04	k: 877	n:2760000
PPP2R2B   2760000 perm   3332 sec   (828 perm/sec)   p_kst 3.177536e-04   p_cons 3.707609e-03   p_joint 1.920290e-05

Joint ci ratio: 5.334391e-01	ci left: 1.433239e-05	ci right 2.502711e-05	k: 53	n:2770000
Cons ci ratio: 3.859630e-02	ci left: 3.638493e-03	ci right 3.782043e-03	k: 10276	n:2770000
KS ci ratio: 1.320471e-01	ci left: 2.970467e-04	ci right 3.393885e-04	k: 880	n:2770000
PPP2R2B   2770000 perm   3354 sec   (826 perm/sec)   p_kst 3.176895e-04   p_cons 3.709747e-03   p_joint 1.913357e-05

Joint ci ratio: 5.334392e-01	ci left: 1.428084e-05	ci right 2.493709e-05	k: 53	n:2780000
Cons ci ratio: 3.849705e-02	ci left: 3.644286e-03	ci right 3.787686e-03	k: 10329	n:2780000
KS ci ratio: 1.316740e-01	ci left: 2.977174e-04	ci right 3.400255e-04	k: 885	n:2780000
PPP2R2B   2780000 perm   3376 sec   (823 perm/sec)   p_kst 3.183453e-04   p_cons 3.715468e-03   p_joint 1.906475e-05

Joint ci ratio: 5.334392e-01	ci left: 1.422965e-05	ci right 2.484771e-05	k: 53	n:2790000
Cons ci ratio: 3.843201e-02	ci left: 3.643648e-03	ci right 3.786776e-03	k: 10364	n:2790000
KS ci ratio: 1.310834e-01	ci left: 2.994235e-04	ci right 3.417683e-04	k: 893	n:2790000
PPP2R2B   2790000 perm   3399 sec   (821 perm/sec)   p_kst 3.200717e-04   p_cons 3.714695e-03   p_joint 1.899642e-05

Joint ci ratio: 5.334392e-01	ci left: 1.417883e-05	ci right 2.475897e-05	k: 53	n:2800000
Cons ci ratio: 3.837101e-02	ci left: 3.642307e-03	ci right 3.785151e-03	k: 10397	n:2800000
KS ci ratio: 1.310102e-01	ci left: 2.986995e-04	ci right 3.409166e-04	k: 894	n:2800000
PPP2R2B   2800000 perm   3421 sec   (819 perm/sec)   p_kst 3.192857e-04   p_cons 3.713214e-03   p_joint 1.892857e-05

Joint ci ratio: 5.334392e-01	ci left: 1.412837e-05	ci right 2.467086e-05	k: 53	n:2810000
Cons ci ratio: 3.831213e-02	ci left: 3.640624e-03	ci right 3.783177e-03	k: 10429	n:2810000
KS ci ratio: 1.306457e-01	ci left: 2.993577e-04	ci right 3.415409e-04	k: 899	n:2810000
PPP2R2B   2810000 perm   3443 sec   (816 perm/sec)   p_kst 3.199288e-04   p_cons 3.711388e-03   p_joint 1.886121e-05

Joint ci ratio: 5.334392e-01	ci left: 1.407827e-05	ci right 2.458337e-05	k: 53	n:2820000
Cons ci ratio: 3.825170e-02	ci left: 3.639304e-03	ci right 3.781576e-03	k: 10462	n:2820000
KS ci ratio: 1.302123e-01	ci left: 3.003544e-04	ci right 3.425268e-04	k: 905	n:2820000
PPP2R2B   2820000 perm   3466 sec   (814 perm/sec)   p_kst 3.209220e-04   p_cons 3.709929e-03   p_joint 1.879433e-05

Joint ci ratio: 5.238268e-01	ci left: 1.464085e-05	ci right 2.529677e-05	k: 55	n:2830000
Cons ci ratio: 3.818972e-02	ci left: 3.638344e-03	ci right 3.780343e-03	k: 10496	n:2830000
KS ci ratio: 1.302124e-01	ci left: 2.992930e-04	ci right 3.413165e-04	k: 905	n:2830000
PPP2R2B   2830000 perm   3490 sec   (811 perm/sec)   p_kst 3.197880e-04   p_cons 3.708834e-03   p_joint 1.943463e-05

Joint ci ratio: 5.192114e-01	ci left: 1.489503e-05	ci right 2.560579e-05	k: 56	n:2840000
Cons ci ratio: 3.811714e-02	ci left: 3.639483e-03	ci right 3.781250e-03	k: 10536	n:2840000
KS ci ratio: 1.298545e-01	ci left: 2.999425e-04	ci right 3.419324e-04	k: 910	n:2840000
PPP2R2B   2840000 perm   3512 sec   (809 perm/sec)   p_kst 3.204225e-04   p_cons 3.709859e-03   p_joint 1.971831e-05

Joint ci ratio: 5.192114e-01	ci left: 1.484277e-05	ci right 2.551595e-05	k: 56	n:2850000
Cons ci ratio: 3.804498e-02	ci left: 3.640614e-03	ci right 3.782152e-03	k: 10576	n:2850000
KS ci ratio: 1.295704e-01	ci left: 3.002480e-04	ci right 3.421817e-04	k: 914	n:2850000
PPP2R2B   2850000 perm   3534 sec   (806 perm/sec)   p_kst 3.207018e-04   p_cons 3.710877e-03   p_joint 1.964912e-05

Joint ci ratio: 5.192114e-01	ci left: 1.479087e-05	ci right 2.542673e-05	k: 56	n:2860000
Cons ci ratio: 3.797861e-02	ci left: 3.640699e-03	ci right 3.781987e-03	k: 10613	n:2860000
KS ci ratio: 1.293585e-01	ci left: 3.002132e-04	ci right 3.420682e-04	k: 917	n:2860000
PPP2R2B   2860000 perm   3558 sec   (804 perm/sec)   p_kst 3.206294e-04   p_cons 3.710839e-03   p_joint 1.958042e-05

Joint ci ratio: 5.192114e-01	ci left: 1.473934e-05	ci right 2.533813e-05	k: 56	n:2870000
Cons ci ratio: 3.791437e-02	ci left: 3.640438e-03	ci right 3.781472e-03	k: 10649	n:2870000
KS ci ratio: 1.292178e-01	ci left: 2.998415e-04	ci right 3.415957e-04	k: 919	n:2870000
PPP2R2B   2870000 perm   3581 sec   (801 perm/sec)   p_kst 3.202091e-04   p_cons 3.710453e-03   p_joint 1.951220e-05

Joint ci ratio: 5.192115e-01	ci left: 1.468816e-05	ci right 2.525016e-05	k: 56	n:2880000
Cons ci ratio: 3.785580e-02	ci left: 3.639147e-03	ci right 3.779909e-03	k: 10682	n:2880000
KS ci ratio: 1.291477e-01	ci left: 2.991364e-04	ci right 3.407680e-04	k: 920	n:2880000
PPP2R2B   2880000 perm   3605 sec   (799 perm/sec)   p_kst 3.194444e-04   p_cons 3.709028e-03   p_joint 1.944444e-05

Joint ci ratio: 5.192115e-01	ci left: 1.463733e-05	ci right 2.516278e-05	k: 56	n:2890000
Cons ci ratio: 3.780989e-02	ci left: 3.635467e-03	ci right 3.775911e-03	k: 10708	n:2890000
KS ci ratio: 1.287290e-01	ci left: 3.001104e-04	ci right 3.417319e-04	k: 926	n:2890000
PPP2R2B   2890000 perm   3627 sec   (797 perm/sec)   p_kst 3.204152e-04   p_cons 3.705190e-03   p_joint 1.937716e-05

Joint ci ratio: 5.192115e-01	ci left: 1.458686e-05	ci right 2.507602e-05	k: 56	n:2900000
Cons ci ratio: 3.775356e-02	ci left: 3.633861e-03	ci right 3.774030e-03	k: 10740	n:2900000
KS ci ratio: 1.284522e-01	ci left: 3.004105e-04	ci right 3.419772e-04	k: 930	n:2900000
PPP2R2B   2900000 perm   3651 sec   (794 perm/sec)   p_kst 3.206897e-04   p_cons 3.703448e-03   p_joint 1.931034e-05

Joint ci ratio: 5.192115e-01	ci left: 1.453673e-05	ci right 2.498985e-05	k: 56	n:2910000
Cons ci ratio: 3.768870e-02	ci left: 3.633968e-03	ci right 3.773895e-03	k: 10777	n:2910000
KS ci ratio: 1.284522e-01	ci left: 2.993782e-04	ci right 3.408020e-04	k: 930	n:2910000
PPP2R2B   2910000 perm   3674 sec   (792 perm/sec)   p_kst 3.195876e-04   p_cons 3.703436e-03   p_joint 1.924399e-05

Joint ci ratio: 5.192115e-01	ci left: 1.448695e-05	ci right 2.490426e-05	k: 56	n:2920000
Cons ci ratio: 3.761196e-02	ci left: 3.636450e-03	ci right 3.776181e-03	k: 10821	n:2920000
KS ci ratio: 1.281772e-01	ci left: 2.996788e-04	ci right 3.410487e-04	k: 934	n:2920000
PPP2R2B   2920000 perm   3697 sec   (790 perm/sec)   p_kst 3.198630e-04   p_cons 3.705822e-03   p_joint 1.917808e-05

Joint ci ratio: 5.192115e-01	ci left: 1.443751e-05	ci right 2.481927e-05	k: 56	n:2930000
Cons ci ratio: 3.755824e-02	ci left: 3.634519e-03	ci right 3.773973e-03	k: 10852	n:2930000
KS ci ratio: 1.281087e-01	ci left: 2.989864e-04	ci right 3.402370e-04	k: 935	n:2930000
PPP2R2B   2930000 perm   3720 sec   (788 perm/sec)   p_kst 3.191126e-04   p_cons 3.703754e-03   p_joint 1.911263e-05

Joint ci ratio: 5.192116e-01	ci left: 1.438840e-05	ci right 2.473485e-05	k: 56	n:2940000
Cons ci ratio: 3.750649e-02	ci left: 3.632265e-03	ci right 3.771436e-03	k: 10882	n:2940000
KS ci ratio: 1.279039e-01	ci left: 2.989571e-04	ci right 3.401328e-04	k: 938	n:2940000
PPP2R2B   2940000 perm   3743 sec   (785 perm/sec)   p_kst 3.190476e-04   p_cons 3.701361e-03   p_joint 1.904762e-05

Joint ci ratio: 5.192116e-01	ci left: 1.433962e-05	ci right 2.465100e-05	k: 56	n:2950000
Cons ci ratio: 3.744461e-02	ci left: 3.632041e-03	ci right 3.770969e-03	k: 10918	n:2950000
KS ci ratio: 1.276323e-01	ci left: 2.992563e-04	ci right 3.403790e-04	k: 942	n:2950000
PPP2R2B   2950000 perm   3767 sec   (783 perm/sec)   p_kst 3.193220e-04   p_cons 3.701017e-03   p_joint 1.898305e-05

Joint ci ratio: 5.192116e-01	ci left: 1.429118e-05	ci right 2.456772e-05	k: 56	n:2960000
Cons ci ratio: 3.736764e-02	ci left: 3.634832e-03	ci right 3.773574e-03	k: 10963	n:2960000
KS ci ratio: 1.274298e-01	ci left: 2.992265e-04	ci right 3.402749e-04	k: 945	n:2960000
PPP2R2B   2960000 perm   3791 sec   (781 perm/sec)   p_kst 3.192568e-04   p_cons 3.703716e-03   p_joint 1.891892e-05

Joint ci ratio: 5.192116e-01	ci left: 1.424306e-05	ci right 2.448500e-05	k: 56	n:2970000
Cons ci ratio: 3.731667e-02	ci left: 3.632600e-03	ci right 3.771064e-03	k: 10993	n:2970000
KS ci ratio: 1.272953e-01	ci left: 2.988709e-04	ci right 3.398241e-04	k: 947	n:2970000
PPP2R2B   2970000 perm   3817 sec   (778 perm/sec)   p_kst 3.188552e-04   p_cons 3.701347e-03   p_joint 1.885522e-05

Joint ci ratio: 5.147161e-01	ci left: 1.448703e-05	ci right 2.478185e-05	k: 57	n:2980000
Cons ci ratio: 3.725742e-02	ci left: 3.632045e-03	ci right 3.770264e-03	k: 11028	n:2980000
KS ci ratio: 1.272283e-01	ci left: 2.981929e-04	ci right 3.390300e-04	k: 948	n:2980000
PPP2R2B   2980000 perm   3842 sec   (776 perm/sec)   p_kst 3.181208e-04   p_cons 3.700671e-03   p_joint 1.912752e-05

Joint ci ratio: 5.147161e-01	ci left: 1.443857e-05	ci right 2.469896e-05	k: 57	n:2990000
Cons ci ratio: 3.720014e-02	ci left: 3.631163e-03	ci right 3.769132e-03	k: 11062	n:2990000
KS ci ratio: 1.270945e-01	ci left: 2.978432e-04	ci right 3.385862e-04	k: 950	n:2990000
PPP2R2B   2990000 perm   3865 sec   (774 perm/sec)   p_kst 3.177258e-04   p_cons 3.699666e-03   p_joint 1.906355e-05

Joint ci ratio: 5.103354e-01	ci left: 1.468064e-05	ci right 2.499275e-05	k: 58	n:3000000
Cons ci ratio: 3.713977e-02	ci left: 3.630948e-03	ci right 3.768679e-03	k: 11098	n:3000000
KS ci ratio: 1.268945e-01	ci left: 2.978186e-04	ci right 3.384894e-04	k: 953	n:3000000
PPP2R2B   3000000 perm   3890 sec   (771 perm/sec)   p_kst 3.176667e-04   p_cons 3.699333e-03   p_joint 1.933333e-05

Joint ci ratio: 5.103354e-01	ci left: 1.463187e-05	ci right 2.490971e-05	k: 58	n:3010000
Cons ci ratio: 3.708805e-02	ci left: 3.629088e-03	ci right 3.766553e-03	k: 11129	n:3010000
KS ci ratio: 1.266293e-01	ci left: 2.981160e-04	ci right 3.387358e-04	k: 957	n:3010000
PPP2R2B   3010000 perm   3916 sec   (769 perm/sec)   p_kst 3.179402e-04   p_cons 3.697342e-03   p_joint 1.926910e-05

Joint ci ratio: 5.103355e-01	ci left: 1.458342e-05	ci right 2.482723e-05	k: 58	n:3020000
Cons ci ratio: 3.702323e-02	ci left: 3.629866e-03	ci right 3.767115e-03	k: 11168	n:3020000
KS ci ratio: 1.263001e-01	ci left: 2.987321e-04	ci right 3.393222e-04	k: 962	n:3020000
PPP2R2B   3020000 perm   3940 sec   (767 perm/sec)   p_kst 3.185430e-04   p_cons 3.698013e-03   p_joint 1.920530e-05

Joint ci ratio: 5.060647e-01	ci left: 1.482298e-05	ci right 2.511732e-05	k: 59	n:3030000
Cons ci ratio: 3.696371e-02	ci left: 3.629657e-03	ci right 3.766673e-03	k: 11204	n:3030000
KS ci ratio: 1.261691e-01	ci left: 2.983854e-04	ci right 3.388832e-04	k: 964	n:3030000
PPP2R2B   3030000 perm   3964 sec   (764 perm/sec)   p_kst 3.181518e-04   p_cons 3.697690e-03   p_joint 1.947195e-05

Joint ci ratio: 5.060647e-01	ci left: 1.477422e-05	ci right 2.503470e-05	k: 59	n:3040000
Cons ci ratio: 3.690448e-02	ci left: 3.629450e-03	ci right 3.766234e-03	k: 11240	n:3040000
KS ci ratio: 1.260386e-01	ci left: 2.980410e-04	ci right 3.384471e-04	k: 966	n:3040000
PPP2R2B   3040000 perm   3989 sec   (762 perm/sec)   p_kst 3.177632e-04   p_cons 3.697368e-03   p_joint 1.940789e-05

Joint ci ratio: 5.018995e-01	ci left: 1.501194e-05	ci right 2.532186e-05	k: 60	n:3050000
Cons ci ratio: 3.683898e-02	ci left: 3.630545e-03	ci right 3.767122e-03	k: 11280	n:3050000
KS ci ratio: 1.258436e-01	ci left: 2.980164e-04	ci right 3.383520e-04	k: 969	n:3050000
PPP2R2B   3050000 perm   4014 sec   (760 perm/sec)   p_kst 3.177049e-04   p_cons 3.698361e-03   p_joint 1.967213e-05

Joint ci ratio: 4.938684e-01	ci left: 1.553436e-05	ci right 2.597417e-05	k: 62	n:3060000
Cons ci ratio: 3.678197e-02	ci left: 3.630013e-03	ci right 3.766354e-03	k: 11315	n:3060000
KS ci ratio: 1.255205e-01	ci left: 2.986252e-04	ci right 3.389316e-04	k: 974	n:3060000
PPP2R2B   3060000 perm   4039 sec   (758 perm/sec)   p_kst 3.183007e-04   p_cons 3.697712e-03   p_joint 2.026144e-05

Joint ci ratio: 4.938684e-01	ci left: 1.548376e-05	ci right 2.588957e-05	k: 62	n:3070000
Cons ci ratio: 3.671387e-02	ci left: 3.631744e-03	ci right 3.767892e-03	k: 11357	n:3070000
KS ci ratio: 1.251998e-01	ci left: 2.992300e-04	ci right 3.395073e-04	k: 979	n:3070000
PPP2R2B   3070000 perm   4063 sec   (756 perm/sec)   p_kst 3.188925e-04   p_cons 3.699349e-03   p_joint 2.019544e-05

Joint ci ratio: 4.938684e-01	ci left: 1.543349e-05	ci right 2.580551e-05	k: 62	n:3080000
Cons ci ratio: 3.665422e-02	ci left: 3.631855e-03	ci right 3.767782e-03	k: 11394	n:3080000
KS ci ratio: 1.250086e-01	ci left: 2.992020e-04	ci right 3.394095e-04	k: 982	n:3080000
PPP2R2B   3080000 perm   4088 sec   (753 perm/sec)   p_kst 3.188312e-04   p_cons 3.699351e-03   p_joint 2.012987e-05

Joint ci ratio: 4.899948e-01	ci left: 1.566700e-05	ci right 2.608548e-05	k: 63	n:3090000
Cons ci ratio: 3.659646e-02	ci left: 3.631645e-03	ci right 3.767346e-03	k: 11430	n:3090000
KS ci ratio: 1.246919e-01	ci left: 2.998014e-04	ci right 3.399797e-04	k: 987	n:3090000
PPP2R2B   3090000 perm   4112 sec   (751 perm/sec)   p_kst 3.194175e-04   p_cons 3.699029e-03   p_joint 2.038835e-05

Joint ci ratio: 4.899949e-01	ci left: 1.561646e-05	ci right 2.600133e-05	k: 63	n:3100000
Cons ci ratio: 3.654697e-02	ci left: 3.629839e-03	ci right 3.765284e-03	k: 11461	n:3100000
KS ci ratio: 1.246288e-01	ci left: 2.991468e-04	ci right 3.392156e-04	k: 988	n:3100000
PPP2R2B   3100000 perm   4137 sec   (749 perm/sec)   p_kst 3.187097e-04   p_cons 3.697097e-03   p_joint 2.032258e-05

Joint ci ratio: 4.862110e-01	ci left: 1.584820e-05	ci right 2.627857e-05	k: 64	n:3110000
Cons ci ratio: 3.649131e-02	ci left: 3.629319e-03	ci right 3.764534e-03	k: 11496	n:3110000
KS ci ratio: 1.245030e-01	ci left: 2.988079e-04	ci right 3.387880e-04	k: 990	n:3110000
PPP2R2B   3110000 perm   4161 sec   (747 perm/sec)   p_kst 3.183280e-04   p_cons 3.696463e-03   p_joint 2.057878e-05

Joint ci ratio: 4.862110e-01	ci left: 1.579741e-05	ci right 2.619434e-05	k: 64	n:3120000
Cons ci ratio: 3.643591e-02	ci left: 3.628802e-03	ci right 3.763789e-03	k: 11531	n:3120000
KS ci ratio: 1.243776e-01	ci left: 2.984713e-04	ci right 3.383632e-04	k: 992	n:3120000
PPP2R2B   3120000 perm   4188 sec   (745 perm/sec)   p_kst 3.179487e-04   p_cons 3.695833e-03   p_joint 2.051282e-05

Joint ci ratio: 4.862110e-01	ci left: 1.574693e-05	ci right 2.611065e-05	k: 64	n:3130000
Cons ci ratio: 3.636971e-02	ci left: 3.630505e-03	ci right 3.765304e-03	k: 11573	n:3130000
KS ci ratio: 1.240035e-01	ci left: 2.993751e-04	ci right 3.392586e-04	k: 998	n:3130000
PPP2R2B   3130000 perm   4213 sec   (743 perm/sec)   p_kst 3.188498e-04   p_cons 3.697444e-03   p_joint 2.044728e-05

Joint ci ratio: 4.825135e-01	ci left: 1.597635e-05	ci right 2.638459e-05	k: 65	n:3140000
Cons ci ratio: 3.631014e-02	ci left: 3.630934e-03	ci right 3.765525e-03	k: 11611	n:3140000
KS ci ratio: 1.238177e-01	ci left: 2.993475e-04	ci right 3.391631e-04	k: 1001	n:3140000
PPP2R2B   3140000 perm   4237 sec   (741 perm/sec)   p_kst 3.187898e-04   p_cons 3.697771e-03   p_joint 2.070064e-05

Joint ci ratio: 4.825135e-01	ci left: 1.592563e-05	ci right 2.630083e-05	k: 65	n:3150000
Cons ci ratio: 3.626024e-02	ci left: 3.629474e-03	ci right 3.763822e-03	k: 11643	n:3150000
KS ci ratio: 1.235713e-01	ci left: 2.996277e-04	ci right 3.393955e-04	k: 1005	n:3150000
PPP2R2B   3150000 perm   4263 sec   (739 perm/sec)   p_kst 3.190476e-04   p_cons 3.696190e-03   p_joint 2.063492e-05

Joint ci ratio: 4.086822e-01	ci left: 2.318599e-05	ci right 3.535679e-05	k: 91	n:3160000
Cons ci ratio: 3.620588e-02	ci left: 3.628964e-03	ci right 3.763087e-03	k: 11678	n:3160000
KS ci ratio: 1.234487e-01	ci left: 2.992929e-04	ci right 3.389740e-04	k: 1007	n:3160000
PPP2R2B   3160000 perm   4289 sec   (737 perm/sec)   p_kst 3.186709e-04   p_cons 3.695570e-03   p_joint 2.879747e-05

Joint ci ratio: 4.086823e-01	ci left: 2.311284e-05	ci right 3.524526e-05	k: 91	n:3170000
Cons ci ratio: 3.614712e-02	ci left: 3.629395e-03	ci right 3.763312e-03	k: 11716	n:3170000
KS ci ratio: 1.233264e-01	ci left: 2.989602e-04	ci right 3.385550e-04	k: 1009	n:3170000
PPP2R2B   3170000 perm   4314 sec   (735 perm/sec)   p_kst 3.182965e-04   p_cons 3.695899e-03   p_joint 2.870662e-05

Joint ci ratio: 4.086823e-01	ci left: 2.304016e-05	ci right 3.513442e-05	k: 91	n:3180000
Cons ci ratio: 3.607940e-02	ci left: 3.631694e-03	ci right 3.765439e-03	k: 11760	n:3180000
KS ci ratio: 1.232045e-01	ci left: 2.986296e-04	ci right 3.381387e-04	k: 1011	n:3180000
PPP2R2B   3180000 perm   4339 sec   (733 perm/sec)   p_kst 3.179245e-04   p_cons 3.698113e-03   p_joint 2.861635e-05

Joint ci ratio: 4.043111e-01	ci left: 2.353078e-05	ci right 3.571502e-05	k: 93	n:3190000
Cons ci ratio: 3.602125e-02	ci left: 3.632114e-03	ci right 3.765655e-03	k: 11798	n:3190000
KS ci ratio: 1.230223e-01	ci left: 2.986049e-04	ci right 3.380481e-04	k: 1014	n:3190000
PPP2R2B   3190000 perm   4365 sec   (731 perm/sec)   p_kst 3.178683e-04   p_cons 3.698433e-03   p_joint 2.915361e-05

Joint ci ratio: 4.043111e-01	ci left: 2.345725e-05	ci right 3.560341e-05	k: 93	n:3200000
Cons ci ratio: 3.596338e-02	ci left: 3.632532e-03	ci right 3.765869e-03	k: 11836	n:3200000
KS ci ratio: 1.229013e-01	ci left: 2.982775e-04	ci right 3.376359e-04	k: 1016	n:3200000
PPP2R2B   3200000 perm   4390 sec   (729 perm/sec)   p_kst 3.175000e-04   p_cons 3.698750e-03   p_joint 2.906250e-05

Joint ci ratio: 4.021775e-01	ci left: 2.366410e-05	ci right 3.583546e-05	k: 94	n:3210000
Cons ci ratio: 3.591793e-02	ci left: 3.630477e-03	ci right 3.763567e-03	k: 11866	n:3210000
KS ci ratio: 1.227204e-01	ci left: 2.982542e-04	ci right 3.375474e-04	k: 1019	n:3210000
PPP2R2B   3210000 perm   4417 sec   (727 perm/sec)   p_kst 3.174455e-04   p_cons 3.696573e-03   p_joint 2.928349e-05

Joint ci ratio: 4.021775e-01	ci left: 2.359061e-05	ci right 3.572417e-05	k: 94	n:3220000
Cons ci ratio: 3.586358e-02	ci left: 3.630282e-03	ci right 3.763159e-03	k: 11902	n:3220000
KS ci ratio: 1.224805e-01	ci left: 2.985321e-04	ci right 3.377794e-04	k: 1023	n:3220000
PPP2R2B   3220000 perm   4443 sec   (725 perm/sec)   p_kst 3.177019e-04   p_cons 3.696273e-03   p_joint 2.919255e-05

Joint ci ratio: 4.021775e-01	ci left: 2.351758e-05	ci right 3.561357e-05	k: 94	n:3230000
Cons ci ratio: 3.580044e-02	ci left: 3.631930e-03	ci right 3.764628e-03	k: 11944	n:3230000
KS ci ratio: 1.224806e-01	ci left: 2.976078e-04	ci right 3.367336e-04	k: 1023	n:3230000
PPP2R2B   3230000 perm   4469 sec   (723 perm/sec)   p_kst 3.167183e-04   p_cons 3.697833e-03   p_joint 2.910217e-05

Joint ci ratio: 4.021776e-01	ci left: 2.344499e-05	ci right 3.550365e-05	k: 94	n:3240000
Cons ci ratio: 3.574063e-02	ci left: 3.632955e-03	ci right 3.765465e-03	k: 11984	n:3240000
KS ci ratio: 1.223015e-01	ci left: 2.975869e-04	ci right 3.366486e-04	k: 1026	n:3240000
PPP2R2B   3240000 perm   4495 sec   (721 perm/sec)   p_kst 3.166667e-04   p_cons 3.698765e-03   p_joint 2.901235e-05

Joint ci ratio: 4.021776e-01	ci left: 2.337285e-05	ci right 3.539441e-05	k: 94	n:3250000
Cons ci ratio: 3.567963e-02	ci left: 3.634280e-03	ci right 3.766607e-03	k: 12025	n:3250000
KS ci ratio: 1.223016e-01	ci left: 2.966712e-04	ci right 3.356128e-04	k: 1026	n:3250000
PPP2R2B   3250000 perm   4520 sec   (719 perm/sec)   p_kst 3.156923e-04   p_cons 3.700000e-03   p_joint 2.892308e-05

Joint ci ratio: 4.021776e-01	ci left: 2.330116e-05	ci right 3.528584e-05	k: 94	n:3260000
Cons ci ratio: 3.562191e-02	ci left: 3.634988e-03	ci right 3.767123e-03	k: 12064	n:3260000
KS ci ratio: 1.220049e-01	ci left: 2.972481e-04	ci right 3.361639e-04	k: 1031	n:3260000
PPP2R2B   3260000 perm   4546 sec   (717 perm/sec)   p_kst 3.162577e-04   p_cons 3.700613e-03   p_joint 2.883436e-05

Joint ci ratio: 4.021776e-01	ci left: 2.322990e-05	ci right 3.517793e-05	k: 94	n:3270000
Cons ci ratio: 3.556299e-02	ci left: 3.635996e-03	ci right 3.767944e-03	k: 12104	n:3270000
KS ci ratio: 1.218869e-01	ci left: 2.969320e-04	ci right 3.357661e-04	k: 1033	n:3270000
PPP2R2B   3270000 perm   4573 sec   (715 perm/sec)   p_kst 3.159021e-04   p_cons 3.701529e-03   p_joint 2.874618e-05

Joint ci ratio: 4.000774e-01	ci left: 2.343319e-05	ci right 3.540616e-05	k: 95	n:3280000
Cons ci ratio: 3.550876e-02	ci left: 3.636091e-03	ci right 3.767837e-03	k: 12141	n:3280000
KS ci ratio: 1.218281e-01	ci left: 2.963223e-04	ci right 3.350566e-04	k: 1034	n:3280000
PPP2R2B   3280000 perm   4598 sec   (713 perm/sec)   p_kst 3.152439e-04   p_cons 3.701524e-03   p_joint 2.896341e-05

Joint ci ratio: 3.980098e-01	ci left: 2.363541e-05	ci right 3.563284e-05	k: 96	n:3290000
Cons ci ratio: 3.545186e-02	ci left: 3.636788e-03	ci right 3.768344e-03	k: 12180	n:3290000
KS ci ratio: 1.217105e-01	ci left: 2.960110e-04	ci right 3.346646e-04	k: 1036	n:3290000
PPP2R2B   3290000 perm   4624 sec   (711 perm/sec)   p_kst 3.148936e-04   p_cons 3.702128e-03   p_joint 2.917933e-05

Joint ci ratio: 3.980098e-01	ci left: 2.356379e-05	ci right 3.552486e-05	k: 96	n:3300000
Cons ci ratio: 3.540833e-02	ci left: 3.634777e-03	ci right 3.766096e-03	k: 12210	n:3300000
KS ci ratio: 1.215349e-01	ci left: 2.959954e-04	ci right 3.345872e-04	k: 1039	n:3300000
PPP2R2B   3300000 perm   4651 sec   (709 perm/sec)   p_kst 3.148485e-04   p_cons 3.700000e-03   p_joint 2.909091e-05

Joint ci ratio: 3.980098e-01	ci left: 2.349260e-05	ci right 3.541754e-05	k: 96	n:3310000
Cons ci ratio: 3.534901e-02	ci left: 3.636073e-03	ci right 3.767214e-03	k: 12251	n:3310000
KS ci ratio: 1.214182e-01	ci left: 2.956871e-04	ci right 3.341990e-04	k: 1041	n:3310000
PPP2R2B   3310000 perm   4678 sec   (708 perm/sec)   p_kst 3.145015e-04   p_cons 3.701208e-03   p_joint 2.900302e-05

Joint ci ratio: 3.959739e-01	ci left: 2.369297e-05	ci right 3.564199e-05	k: 97	n:3320000
Cons ci ratio: 3.529287e-02	ci left: 3.636765e-03	ci right 3.767718e-03	k: 12290	n:3320000
KS ci ratio: 1.211858e-01	ci left: 2.959647e-04	ci right 3.344337e-04	k: 1045	n:3320000
PPP2R2B   3320000 perm   4705 sec   (706 perm/sec)   p_kst 3.147590e-04   p_cons 3.701807e-03   p_joint 2.921687e-05

Joint ci ratio: 3.959739e-01	ci left: 2.362182e-05	ci right 3.553495e-05	k: 97	n:3330000
Cons ci ratio: 3.522553e-02	ci left: 3.639833e-03	ci right 3.770642e-03	k: 12337	n:3330000
KS ci ratio: 1.211280e-01	ci left: 2.953671e-04	ci right 3.337388e-04	k: 1046	n:3330000
PPP2R2B   3330000 perm   4731 sec   (704 perm/sec)   p_kst 3.141141e-04   p_cons 3.704805e-03   p_joint 2.912913e-05

Joint ci ratio: 3.959739e-01	ci left: 2.355110e-05	ci right 3.542856e-05	k: 97	n:3340000
Cons ci ratio: 3.517711e-02	ci left: 3.639025e-03	ci right 3.769622e-03	k: 12371	n:3340000
KS ci ratio: 1.209548e-01	ci left: 2.953538e-04	ci right 3.336650e-04	k: 1049	n:3340000
PPP2R2B   3340000 perm   4758 sec   (702 perm/sec)   p_kst 3.140719e-04   p_cons 3.703892e-03   p_joint 2.904192e-05

Joint ci ratio: 3.939689e-01	ci left: 2.374965e-05	ci right 3.565081e-05	k: 98	n:3350000
Cons ci ratio: 3.513600e-02	ci left: 3.636743e-03	ci right 3.767102e-03	k: 12400	n:3350000
KS ci ratio: 1.208973e-01	ci left: 2.947616e-04	ci right 3.329765e-04	k: 1050	n:3350000
PPP2R2B   3350000 perm   4784 sec   (700 perm/sec)   p_kst 3.134328e-04   p_cons 3.701493e-03   p_joint 2.925373e-05

Joint ci ratio: 3.919941e-01	ci left: 2.394718e-05	ci right 3.587160e-05	k: 99	n:3360000
Cons ci ratio: 3.508653e-02	ci left: 3.636245e-03	ci right 3.766398e-03	k: 12435	n:3360000
KS ci ratio: 1.207824e-01	ci left: 2.944616e-04	ci right 3.325987e-04	k: 1052	n:3360000
PPP2R2B   3360000 perm   4811 sec   (698 perm/sec)   p_kst 3.130952e-04   p_cons 3.700893e-03   p_joint 2.946429e-05

Joint ci ratio: 3.919941e-01	ci left: 2.387612e-05	ci right 3.576515e-05	k: 99	n:3370000
Cons ci ratio: 3.504715e-02	ci left: 3.633690e-03	ci right 3.763604e-03	k: 12463	n:3370000
KS ci ratio: 1.205537e-01	ci left: 2.947389e-04	ci right 3.328345e-04	k: 1056	n:3370000
PPP2R2B   3370000 perm   4838 sec   (697 perm/sec)   p_kst 3.133531e-04   p_cons 3.698220e-03   p_joint 2.937685e-05

Joint ci ratio: 3.919941e-01	ci left: 2.380548e-05	ci right 3.565934e-05	k: 99	n:3380000
Cons ci ratio: 3.499243e-02	ci left: 3.634377e-03	ci right 3.764108e-03	k: 12502	n:3380000
KS ci ratio: 1.205537e-01	ci left: 2.938669e-04	ci right 3.318498e-04	k: 1056	n:3380000
PPP2R2B   3380000 perm   4865 sec   (695 perm/sec)   p_kst 3.124260e-04   p_cons 3.698817e-03   p_joint 2.928994e-05

Joint ci ratio: 3.919942e-01	ci left: 2.373526e-05	ci right 3.555415e-05	k: 99	n:3390000
Cons ci ratio: 3.493658e-02	ci left: 3.635353e-03	ci right 3.764907e-03	k: 12542	n:3390000
KS ci ratio: 1.204968e-01	ci left: 2.932861e-04	ci right 3.311748e-04	k: 1057	n:3390000
PPP2R2B   3390000 perm   4892 sec   (693 perm/sec)   p_kst 3.117994e-04   p_cons 3.699705e-03   p_joint 2.920354e-05

Joint ci ratio: 3.919942e-01	ci left: 2.366545e-05	ci right 3.544958e-05	k: 99	n:3400000
Cons ci ratio: 3.488795e-02	ci left: 3.634865e-03	ci right 3.764218e-03	k: 12577	n:3400000
KS ci ratio: 1.203263e-01	ci left: 2.932793e-04	ci right 3.311097e-04	k: 1060	n:3400000
PPP2R2B   3400000 perm   4919 sec   (691 perm/sec)   p_kst 3.117647e-04   p_cons 3.699118e-03   p_joint 2.911765e-05

Joint ci ratio: 3.900487e-01	ci left: 2.386047e-05	ci right 3.566757e-05	k: 100	n:3410000
Cons ci ratio: 3.484229e-02	ci left: 3.633798e-03	ci right 3.762941e-03	k: 12610	n:3410000
KS ci ratio: 1.199875e-01	ci left: 2.941259e-04	ci right 3.319510e-04	k: 1066	n:3410000
PPP2R2B   3410000 perm   4947 sec   (689 perm/sec)   p_kst 3.126100e-04   p_cons 3.697947e-03   p_joint 2.932551e-05

Joint ci ratio: 3.900488e-01	ci left: 2.379070e-05	ci right 3.556328e-05	k: 100	n:3420000
Cons ci ratio: 3.477749e-02	ci left: 3.636796e-03	ci right 3.765800e-03	k: 12657	n:3420000
KS ci ratio: 1.198752e-01	ci left: 2.938331e-04	ci right 3.315828e-04	k: 1068	n:3420000
PPP2R2B   3420000 perm   4974 sec   (688 perm/sec)   p_kst 3.122807e-04   p_cons 3.700877e-03   p_joint 2.923977e-05

Joint ci ratio: 3.862432e-01	ci left: 2.424753e-05	ci right 3.609931e-05	k: 102	n:3430000
Cons ci ratio: 3.473227e-02	ci left: 3.635731e-03	ci right 3.764526e-03	k: 12690	n:3430000
KS ci ratio: 1.196515e-01	ci left: 2.941077e-04	ci right 3.318171e-04	k: 1072	n:3430000
PPP2R2B   3430000 perm   5002 sec   (686 perm/sec)   p_kst 3.125364e-04   p_cons 3.699708e-03   p_joint 2.973761e-05

Joint ci ratio: 3.862432e-01	ci left: 2.417704e-05	ci right 3.599437e-05	k: 102	n:3440000
Cons ci ratio: 3.468585e-02	ci left: 3.634960e-03	ci right 3.763552e-03	k: 12724	n:3440000
KS ci ratio: 1.195402e-01	ci left: 2.938168e-04	ci right 3.314513e-04	k: 1074	n:3440000
PPP2R2B   3440000 perm   5029 sec   (684 perm/sec)   p_kst 3.122093e-04   p_cons 3.698837e-03   p_joint 2.965116e-05

Joint ci ratio: 3.862433e-01	ci left: 2.410696e-05	ci right 3.589004e-05	k: 102	n:3450000
Cons ci ratio: 3.462736e-02	ci left: 3.636780e-03	ci right 3.765215e-03	k: 12767	n:3450000
KS ci ratio: 1.193737e-01	ci left: 2.938087e-04	ci right 3.313861e-04	k: 1077	n:3450000
PPP2R2B   3450000 perm   5057 sec   (682 perm/sec)   p_kst 3.121739e-04   p_cons 3.700580e-03   p_joint 2.956522e-05

Joint ci ratio: 3.862433e-01	ci left: 2.403729e-05	ci right 3.578632e-05	k: 102	n:3460000
Cons ci ratio: 3.457595e-02	ci left: 3.637156e-03	ci right 3.765411e-03	k: 12805	n:3460000
KS ci ratio: 1.192632e-01	ci left: 2.935203e-04	ci right 3.310237e-04	k: 1079	n:3460000
PPP2R2B   3460000 perm   5084 sec   (681 perm/sec)   p_kst 3.118497e-04   p_cons 3.700867e-03   p_joint 2.947977e-05

Joint ci ratio: 3.862433e-01	ci left: 2.396802e-05	ci right 3.568318e-05	k: 102	n:3470000
Cons ci ratio: 3.449781e-02	ci left: 3.643245e-03	ci right 3.771418e-03	k: 12863	n:3470000
KS ci ratio: 1.191529e-01	ci left: 2.932336e-04	ci right 3.306633e-04	k: 1081	n:3470000
PPP2R2B   3470000 perm   5113 sec   (679 perm/sec)   p_kst 3.115274e-04   p_cons 3.706916e-03   p_joint 2.939481e-05

Joint ci ratio: 3.843818e-01	ci left: 2.415867e-05	ci right 3.589571e-05	k: 103	n:3480000
Cons ci ratio: 3.444428e-02	ci left: 3.644171e-03	ci right 3.772174e-03	k: 12903	n:3480000
KS ci ratio: 1.190430e-01	ci left: 2.929486e-04	ci right 3.303049e-04	k: 1083	n:3480000
PPP2R2B   3480000 perm   5141 sec   (677 perm/sec)   p_kst 3.112069e-04   p_cons 3.707759e-03   p_joint 2.959770e-05

Joint ci ratio: 3.825470e-01	ci left: 2.434835e-05	ci right 3.610688e-05	k: 104	n:3490000
Cons ci ratio: 3.439101e-02	ci left: 3.645092e-03	ci right 3.772925e-03	k: 12943	n:3490000
KS ci ratio: 1.188786e-01	ci left: 2.929432e-04	ci right 3.302436e-04	k: 1086	n:3490000
PPP2R2B   3490000 perm   5171 sec   (675 perm/sec)   p_kst 3.111748e-04   p_cons 3.708596e-03   p_joint 2.979943e-05

Joint ci ratio: 3.807382e-01	ci left: 2.453709e-05	ci right 3.631671e-05	k: 105	n:3500000
Cons ci ratio: 3.433930e-02	ci left: 3.645725e-03	ci right 3.773384e-03	k: 12982	n:3500000
KS ci ratio: 1.187694e-01	ci left: 2.926607e-04	ci right 3.298885e-04	k: 1088	n:3500000
PPP2R2B   3500000 perm   5200 sec   (673 perm/sec)   p_kst 3.108571e-04   p_cons 3.709143e-03   p_joint 3.000000e-05

Joint ci ratio: 3.807383e-01	ci left: 2.446718e-05	ci right 3.621325e-05	k: 105	n:3510000
Cons ci ratio: 3.428255e-02	ci left: 3.647484e-03	ci right 3.774989e-03	k: 13025	n:3510000
KS ci ratio: 1.187149e-01	ci left: 2.921033e-04	ci right 3.292420e-04	k: 1089	n:3510000
PPP2R2B   3510000 perm   5228 sec   (671 perm/sec)   p_kst 3.102564e-04   p_cons 3.710826e-03   p_joint 2.991453e-05

Joint ci ratio: 3.807383e-01	ci left: 2.439768e-05	ci right 3.611037e-05	k: 105	n:3520000
Cons ci ratio: 3.423659e-02	ci left: 3.646980e-03	ci right 3.774293e-03	k: 13060	n:3520000
KS ci ratio: 1.185519e-01	ci left: 2.921005e-04	ci right 3.291842e-04	k: 1092	n:3520000
PPP2R2B   3520000 perm   5256 sec   (670 perm/sec)   p_kst 3.102273e-04   p_cons 3.710227e-03   p_joint 2.982955e-05

Joint ci ratio: 3.807383e-01	ci left: 2.432856e-05	ci right 3.600807e-05	k: 105	n:3530000
Cons ci ratio: 3.419214e-02	ci left: 3.646198e-03	ci right 3.773316e-03	k: 13094	n:3530000
KS ci ratio: 1.184436e-01	ci left: 2.918228e-04	ci right 3.288350e-04	k: 1094	n:3530000
PPP2R2B   3530000 perm   5283 sec   (668 perm/sec)   p_kst 3.099150e-04   p_cons 3.709348e-03   p_joint 2.974504e-05

Joint ci ratio: 3.807383e-01	ci left: 2.425984e-05	ci right 3.590636e-05	k: 105	n:3540000
Cons ci ratio: 3.414654e-02	ci left: 3.645700e-03	ci right 3.772628e-03	k: 13129	n:3540000
KS ci ratio: 1.182817e-01	ci left: 2.918208e-04	ci right 3.287787e-04	k: 1097	n:3540000
PPP2R2B   3540000 perm   5313 sec   (666 perm/sec)   p_kst 3.098870e-04   p_cons 3.708757e-03   p_joint 2.966102e-05

Joint ci ratio: 3.789549e-01	ci left: 2.444629e-05	ci right 3.611367e-05	k: 106	n:3550000
Cons ci ratio: 3.409853e-02	ci left: 3.645764e-03	ci right 3.772512e-03	k: 13166	n:3550000
KS ci ratio: 1.181741e-01	ci left: 2.915455e-04	ci right 3.284326e-04	k: 1099	n:3550000
PPP2R2B   3550000 perm   5341 sec   (665 perm/sec)   p_kst 3.095775e-04   p_cons 3.708732e-03   p_joint 2.985915e-05

Joint ci ratio: 3.771964e-01	ci left: 2.463183e-05	ci right 3.631970e-05	k: 107	n:3560000
Cons ci ratio: 3.405979e-02	ci left: 3.643878e-03	ci right 3.770414e-03	k: 13196	n:3560000
KS ci ratio: 1.180669e-01	ci left: 2.912717e-04	ci right 3.280884e-04	k: 1101	n:3560000
PPP2R2B   3560000 perm   5369 sec   (663 perm/sec)   p_kst 3.092697e-04   p_cons 3.706742e-03   p_joint 3.005618e-05

Joint ci ratio: 3.771964e-01	ci left: 2.456283e-05	ci right 3.621797e-05	k: 107	n:3570000
Cons ci ratio: 3.401214e-02	ci left: 3.643947e-03	ci right 3.770305e-03	k: 13233	n:3570000
KS ci ratio: 1.179065e-01	ci left: 2.912714e-04	ci right 3.280345e-04	k: 1104	n:3570000
PPP2R2B   3570000 perm   5397 sec   (661 perm/sec)   p_kst 3.092437e-04   p_cons 3.706723e-03   p_joint 2.997199e-05

Joint ci ratio: 3.771964e-01	ci left: 2.449422e-05	ci right 3.611680e-05	k: 107	n:3580000
Cons ci ratio: 3.397883e-02	ci left: 3.640970e-03	ci right 3.767098e-03	k: 13259	n:3580000
KS ci ratio: 1.177999e-01	ci left: 2.909999e-04	ci right 3.276933e-04	k: 1106	n:3580000
PPP2R2B   3580000 perm   5426 sec   (660 perm/sec)   p_kst 3.089385e-04   p_cons 3.703631e-03   p_joint 2.988827e-05

Joint ci ratio: 3.771964e-01	ci left: 2.442599e-05	ci right 3.601620e-05	k: 107	n:3590000
Cons ci ratio: 3.394690e-02	ci left: 3.637732e-03	ci right 3.763628e-03	k: 13284	n:3590000
KS ci ratio: 1.176937e-01	ci left: 2.907300e-04	ci right 3.273540e-04	k: 1108	n:3590000
PPP2R2B   3590000 perm   5454 sec   (658 perm/sec)   p_kst 3.086351e-04   p_cons 3.700279e-03   p_joint 2.980501e-05

Joint ci ratio: 3.754622e-01	ci left: 2.460964e-05	ci right 3.622008e-05	k: 108	n:3600000
Cons ci ratio: 3.390101e-02	ci left: 3.637542e-03	ci right 3.763258e-03	k: 13320	n:3600000
KS ci ratio: 1.174820e-01	ci left: 2.910009e-04	ci right 3.275885e-04	k: 1112	n:3600000
PPP2R2B   3600000 perm   5483 sec   (657 perm/sec)   p_kst 3.088889e-04   p_cons 3.700000e-03   p_joint 3.000000e-05

Joint ci ratio: 3.754622e-01	ci left: 2.454147e-05	ci right 3.611975e-05	k: 108	n:3610000
Cons ci ratio: 3.385148e-02	ci left: 3.638178e-03	ci right 3.763728e-03	k: 13359	n:3610000
KS ci ratio: 1.173766e-01	ci left: 2.907325e-04	ci right 3.272513e-04	k: 1114	n:3610000
PPP2R2B   3610000 perm   5512 sec   (655 perm/sec)   p_kst 3.085873e-04   p_cons 3.700554e-03   p_joint 2.991690e-05

Joint ci ratio: 3.754622e-01	ci left: 2.447368e-05	ci right 3.601997e-05	k: 108	n:3620000
Cons ci ratio: 3.380090e-02	ci left: 3.639084e-03	ci right 3.764474e-03	k: 13399	n:3620000
KS ci ratio: 1.171143e-01	ci left: 2.912701e-04	ci right 3.277690e-04	k: 1119	n:3620000
PPP2R2B   3620000 perm   5541 sec   (653 perm/sec)   p_kst 3.091160e-04   p_cons 3.701381e-03   p_joint 2.983425e-05

Joint ci ratio: 3.754622e-01	ci left: 2.440626e-05	ci right 3.592075e-05	k: 108	n:3630000
Cons ci ratio: 3.376316e-02	ci left: 3.637254e-03	ci right 3.762438e-03	k: 13429	n:3630000
KS ci ratio: 1.169057e-01	ci left: 2.915374e-04	ci right 3.280002e-04	k: 1123	n:3630000
PPP2R2B   3630000 perm   5571 sec   (652 perm/sec)   p_kst 3.093664e-04   p_cons 3.699449e-03   p_joint 2.975207e-05

Joint ci ratio: 3.737516e-01	ci left: 2.458807e-05	ci right 3.612254e-05	k: 109	n:3640000
Cons ci ratio: 3.370796e-02	ci left: 3.639247e-03	ci right 3.764292e-03	k: 13473	n:3640000
KS ci ratio: 1.169057e-01	ci left: 2.907365e-04	ci right 3.270991e-04	k: 1123	n:3640000
PPP2R2B   3640000 perm   5602 sec   (650 perm/sec)   p_kst 3.085165e-04   p_cons 3.701374e-03   p_joint 2.994505e-05

Joint ci ratio: 3.737517e-01	ci left: 2.452070e-05	ci right 3.602357e-05	k: 109	n:3650000
Cons ci ratio: 3.365177e-02	ci left: 3.641502e-03	ci right 3.766411e-03	k: 13518	n:3650000
KS ci ratio: 1.169058e-01	ci left: 2.899399e-04	ci right 3.262030e-04	k: 1123	n:3650000
PPP2R2B   3650000 perm   5632 sec   (648 perm/sec)   p_kst 3.076712e-04   p_cons 3.703562e-03   p_joint 2.986301e-05

Joint ci ratio: 3.720642e-01	ci left: 2.470133e-05	ci right 3.622386e-05	k: 110	n:3660000
Cons ci ratio: 3.361079e-02	ci left: 3.640493e-03	ci right 3.765212e-03	k: 13551	n:3660000
KS ci ratio: 1.166466e-01	ci left: 2.904740e-04	ci right 3.267177e-04	k: 1128	n:3660000
PPP2R2B   3660000 perm   5661 sec   (646 perm/sec)   p_kst 3.081967e-04   p_cons 3.702459e-03   p_joint 3.005464e-05

Joint ci ratio: 3.720643e-01	ci left: 2.463402e-05	ci right 3.612516e-05	k: 110	n:3670000
Cons ci ratio: 3.356253e-02	ci left: 3.641111e-03	ci right 3.765669e-03	k: 13590	n:3670000
KS ci ratio: 1.165950e-01	ci left: 2.899470e-04	ci right 3.261079e-04	k: 1129	n:3670000
PPP2R2B   3670000 perm   5689 sec   (645 perm/sec)   p_kst 3.076294e-04   p_cons 3.702997e-03   p_joint 2.997275e-05

Joint ci ratio: 3.720643e-01	ci left: 2.456708e-05	ci right 3.602699e-05	k: 110	n:3680000
Cons ci ratio: 3.350583e-02	ci left: 3.643612e-03	ci right 3.768041e-03	k: 13636	n:3680000
KS ci ratio: 1.165435e-01	ci left: 2.894229e-04	ci right 3.255014e-04	k: 1130	n:3680000
PPP2R2B   3680000 perm   5720 sec   (643 perm/sec)   p_kst 3.070652e-04   p_cons 3.705435e-03   p_joint 2.989130e-05

Joint ci ratio: 3.687569e-01	ci left: 2.499206e-05	ci right 3.652160e-05	k: 112	n:3690000
Cons ci ratio: 3.346047e-02	ci left: 3.643681e-03	ci right 3.767940e-03	k: 13673	n:3690000
KS ci ratio: 1.164406e-01	ci left: 2.891648e-04	ci right 3.251771e-04	k: 1132	n:3690000
PPP2R2B   3690000 perm   5750 sec   (642 perm/sec)   p_kst 3.067751e-04   p_cons 3.705420e-03   p_joint 3.035230e-05

Joint ci ratio: 3.687569e-01	ci left: 2.492451e-05	ci right 3.642289e-05	k: 112	n:3700000
Cons ci ratio: 3.339940e-02	ci left: 3.647233e-03	ci right 3.771383e-03	k: 13723	n:3700000
KS ci ratio: 1.162356e-01	ci left: 2.894329e-04	ci right 3.254108e-04	k: 1136	n:3700000
PPP2R2B   3700000 perm   5780 sec   (640 perm/sec)   p_kst 3.070270e-04   p_cons 3.708919e-03   p_joint 3.027027e-05

Joint ci ratio: 3.687569e-01	ci left: 2.485733e-05	ci right 3.632471e-05	k: 112	n:3710000
Cons ci ratio: 3.335204e-02	ci left: 3.647827e-03	ci right 3.771817e-03	k: 13762	n:3710000
KS ci ratio: 1.159300e-01	ci left: 2.902230e-04	ci right 3.261978e-04	k: 1142	n:3710000
PPP2R2B   3710000 perm   5809 sec   (639 perm/sec)   p_kst 3.078167e-04   p_cons 3.709434e-03   p_joint 3.018868e-05

Joint ci ratio: 4.302710e-01	ci left: 1.753150e-05	ci right 2.736112e-05	k: 82	n:3720000
Cons ci ratio: 3.330730e-02	ci left: 3.647884e-03	ci right 3.771707e-03	k: 13799	n:3720000
KS ci ratio: 1.158288e-01	ci left: 2.899649e-04	ci right 3.258742e-04	k: 1144	n:3720000
PPP2R2B   3720000 perm   5839 sec   (637 perm/sec)   p_kst 3.075269e-04   p_cons 3.709409e-03   p_joint 2.204301e-05

Joint ci ratio: 4.302711e-01	ci left: 1.748450e-05	ci right 2.728776e-05	k: 82	n:3730000
Cons ci ratio: 3.325189e-02	ci left: 3.650334e-03	ci right 3.774030e-03	k: 13845	n:3730000
KS ci ratio: 1.156270e-01	ci left: 2.902289e-04	ci right 3.261039e-04	k: 1148	n:3730000
PPP2R2B   3730000 perm   5868 sec   (636 perm/sec)   p_kst 3.077748e-04   p_cons 3.711796e-03   p_joint 2.198391e-05

Joint ci ratio: 4.302711e-01	ci left: 1.743775e-05	ci right 2.721480e-05	k: 82	n:3740000
Cons ci ratio: 3.320275e-02	ci left: 3.651446e-03	ci right 3.774993e-03	k: 13886	n:3740000
KS ci ratio: 1.155767e-01	ci left: 2.897125e-04	ci right 3.255071e-04	k: 1149	n:3740000
PPP2R2B   3740000 perm   5897 sec   (634 perm/sec)   p_kst 3.072193e-04   p_cons 3.712834e-03   p_joint 2.192513e-05

Joint ci ratio: 4.302711e-01	ci left: 1.739125e-05	ci right 2.714223e-05	k: 82	n:3750000
Cons ci ratio: 3.315741e-02	ci left: 3.651758e-03	ci right 3.775144e-03	k: 13924	n:3750000
KS ci ratio: 1.154262e-01	ci left: 2.897168e-04	ci right 3.254622e-04	k: 1152	n:3750000
PPP2R2B   3750000 perm   5928 sec   (633 perm/sec)   p_kst 3.072000e-04   p_cons 3.713067e-03   p_joint 2.186667e-05

Joint ci ratio: 4.302711e-01	ci left: 1.734499e-05	ci right 2.707004e-05	k: 82	n:3760000
Cons ci ratio: 3.311583e-02	ci left: 3.651277e-03	ci right 3.774489e-03	k: 13959	n:3760000
KS ci ratio: 1.154263e-01	ci left: 2.889463e-04	ci right 3.245966e-04	k: 1152	n:3760000
PPP2R2B   3760000 perm   5959 sec   (631 perm/sec)   p_kst 3.063830e-04   p_cons 3.712500e-03   p_joint 2.180851e-05

Joint ci ratio: 4.302711e-01	ci left: 1.729898e-05	ci right 2.699824e-05	k: 82	n:3770000
Cons ci ratio: 3.306491e-02	ci left: 3.652904e-03	ci right 3.775977e-03	k: 14002	n:3770000
KS ci ratio: 1.152764e-01	ci left: 2.889527e-04	ci right 3.245543e-04	k: 1155	n:3770000
PPP2R2B   3770000 perm   5990 sec   (629 perm/sec)   p_kst 3.063660e-04   p_cons 3.714058e-03   p_joint 2.175066e-05

Joint ci ratio: 4.302711e-01	ci left: 1.725322e-05	ci right 2.692681e-05	k: 82	n:3780000
Cons ci ratio: 3.301542e-02	ci left: 3.654259e-03	ci right 3.777191e-03	k: 14044	n:3780000
KS ci ratio: 1.151271e-01	ci left: 2.889590e-04	ci right 3.245122e-04	k: 1158	n:3780000
PPP2R2B   3780000 perm   6020 sec   (628 perm/sec)   p_kst 3.063492e-04   p_cons 3.715344e-03   p_joint 2.169312e-05

Joint ci ratio: 4.277023e-01	ci left: 1.744305e-05	ci right 2.714795e-05	k: 83	n:3790000
Cons ci ratio: 3.297437e-02	ci left: 3.653776e-03	ci right 3.776536e-03	k: 14079	n:3790000
KS ci ratio: 1.146826e-01	ci left: 2.905030e-04	ci right 3.260988e-04	k: 1167	n:3790000
PPP2R2B   3790000 perm   6050 sec   (626 perm/sec)   p_kst 3.079156e-04   p_cons 3.714776e-03   p_joint 2.189974e-05

Joint ci ratio: 4.251789e-01	ci left: 1.763206e-05	ci right 2.736775e-05	k: 84	n:3800000
Cons ci ratio: 3.292762e-02	ci left: 3.654600e-03	ci right 3.777210e-03	k: 14119	n:3800000
KS ci ratio: 1.145846e-01	ci left: 2.902498e-04	ci right 3.257821e-04	k: 1169	n:3800000
PPP2R2B   3800000 perm   6079 sec   (625 perm/sec)   p_kst 3.076316e-04   p_cons 3.715526e-03   p_joint 2.210526e-05

Joint ci ratio: 4.251789e-01	ci left: 1.758578e-05	ci right 2.729592e-05	k: 84	n:3810000
Cons ci ratio: 3.288689e-02	ci left: 3.654119e-03	ci right 3.776558e-03	k: 14154	n:3810000
KS ci ratio: 1.144380e-01	ci left: 2.902528e-04	ci right 3.257370e-04	k: 1172	n:3810000
PPP2R2B   3810000 perm   6110 sec   (624 perm/sec)   p_kst 3.076115e-04   p_cons 3.714961e-03   p_joint 2.204724e-05

Joint ci ratio: 4.251789e-01	ci left: 1.753975e-05	ci right 2.722446e-05	k: 84	n:3820000
Cons ci ratio: 3.285096e-02	ci left: 3.652602e-03	ci right 3.774854e-03	k: 14185	n:3820000
KS ci ratio: 1.143893e-01	ci left: 2.897473e-04	ci right 3.251535e-04	k: 1173	n:3820000
PPP2R2B   3820000 perm   6139 sec   (622 perm/sec)   p_kst 3.070681e-04   p_cons 3.713351e-03   p_joint 2.198953e-05

Joint ci ratio: 4.226997e-01	ci left: 1.772719e-05	ci right 2.744218e-05	k: 85	n:3830000
Cons ci ratio: 3.280474e-02	ci left: 3.653423e-03	ci right 3.775528e-03	k: 14225	n:3830000
KS ci ratio: 1.141949e-01	ci left: 2.900053e-04	ci right 3.253788e-04	k: 1177	n:3830000
PPP2R2B   3830000 perm   6169 sec   (621 perm/sec)   p_kst 3.073107e-04   p_cons 3.714099e-03   p_joint 2.219321e-05

Joint ci ratio: 4.202633e-01	ci left: 1.791381e-05	ci right 2.765860e-05	k: 86	n:3840000
Cons ci ratio: 3.276677e-02	ci left: 3.652432e-03	ci right 3.774360e-03	k: 14258	n:3840000
KS ci ratio: 1.140981e-01	ci left: 2.897560e-04	ci right 3.250671e-04	k: 1179	n:3840000
PPP2R2B   3840000 perm   6199 sec   (619 perm/sec)   p_kst 3.070313e-04   p_cons 3.713021e-03   p_joint 2.239583e-05

Joint ci ratio: 4.202633e-01	ci left: 1.786728e-05	ci right 2.758676e-05	k: 86	n:3850000
Cons ci ratio: 3.273699e-02	ci left: 3.649643e-03	ci right 3.771365e-03	k: 14284	n:3850000
KS ci ratio: 1.140015e-01	ci left: 2.895081e-04	ci right 3.247571e-04	k: 1181	n:3850000
PPP2R2B   3850000 perm   6230 sec   (618 perm/sec)   p_kst 3.067532e-04   p_cons 3.710130e-03   p_joint 2.233766e-05

Joint ci ratio: 4.202633e-01	ci left: 1.782100e-05	ci right 2.751529e-05	k: 86	n:3860000
Cons ci ratio: 3.269009e-02	ci left: 3.650723e-03	ci right 3.772303e-03	k: 14325	n:3860000
KS ci ratio: 1.138091e-01	ci left: 2.897648e-04	ci right 3.249815e-04	k: 1185	n:3860000
PPP2R2B   3860000 perm   6262 sec   (616 perm/sec)   p_kst 3.069948e-04   p_cons 3.711140e-03   p_joint 2.227979e-05

Joint ci ratio: 4.178686e-01	ci left: 1.800609e-05	ci right 2.772969e-05	k: 87	n:3870000
Cons ci ratio: 3.264340e-02	ci left: 3.651798e-03	ci right 3.773236e-03	k: 14366	n:3870000
KS ci ratio: 1.135699e-01	ci left: 2.902713e-04	ci right 3.254705e-04	k: 1190	n:3870000
PPP2R2B   3870000 perm   6293 sec   (615 perm/sec)   p_kst 3.074935e-04   p_cons 3.712145e-03   p_joint 2.248062e-05

Joint ci ratio: 4.155143e-01	ci left: 1.819039e-05	ci right 2.794283e-05	k: 88	n:3880000
Cons ci ratio: 3.261053e-02	ci left: 3.649799e-03	ci right 3.771047e-03	k: 14395	n:3880000
KS ci ratio: 1.133322e-01	ci left: 2.907753e-04	ci right 3.259569e-04	k: 1195	n:3880000
PPP2R2B   3880000 perm   6325 sec   (613 perm/sec)   p_kst 3.079897e-04   p_cons 3.710052e-03   p_joint 2.268041e-05

Joint ci ratio: 4.155144e-01	ci left: 1.814363e-05	ci right 2.787100e-05	k: 88	n:3890000
Cons ci ratio: 3.257324e-02	ci left: 3.648831e-03	ci right 3.769905e-03	k: 14428	n:3890000
KS ci ratio: 1.130961e-01	ci left: 2.912767e-04	ci right 3.264407e-04	k: 1200	n:3890000
PPP2R2B   3890000 perm   6356 sec   (612 perm/sec)   p_kst 3.084833e-04   p_cons 3.708997e-03   p_joint 2.262211e-05

Joint ci ratio: 4.155144e-01	ci left: 1.809711e-05	ci right 2.779953e-05	k: 88	n:3900000
Cons ci ratio: 3.253043e-02	ci left: 3.649139e-03	ci right 3.770061e-03	k: 14466	n:3900000
KS ci ratio: 1.130490e-01	ci left: 2.907790e-04	ci right 3.258673e-04	k: 1201	n:3900000
PPP2R2B   3900000 perm   6387 sec   (611 perm/sec)   p_kst 3.079487e-04   p_cons 3.709231e-03   p_joint 2.256410e-05

Joint ci ratio: 4.155144e-01	ci left: 1.805082e-05	ci right 2.772843e-05	k: 88	n:3910000
Cons ci ratio: 3.248778e-02	ci left: 3.649446e-03	ci right 3.770217e-03	k: 14504	n:3910000
KS ci ratio: 1.129551e-01	ci left: 2.905324e-04	ci right 3.255598e-04	k: 1203	n:3910000
PPP2R2B   3910000 perm   6417 sec   (609 perm/sec)   p_kst 3.076726e-04   p_cons 3.709463e-03   p_joint 2.250639e-05

Joint ci ratio: 4.155144e-01	ci left: 1.800478e-05	ci right 2.765770e-05	k: 88	n:3920000
Cons ci ratio: 3.244307e-02	ci left: 3.650257e-03	ci right 3.770886e-03	k: 14544	n:3920000
KS ci ratio: 1.128614e-01	ci left: 2.902870e-04	ci right 3.252539e-04	k: 1205	n:3920000
PPP2R2B   3920000 perm   6448 sec   (608 perm/sec)   p_kst 3.073980e-04   p_cons 3.710204e-03   p_joint 2.244898e-05

Joint ci ratio: 4.155144e-01	ci left: 1.795896e-05	ci right 2.758732e-05	k: 88	n:3930000
Cons ci ratio: 3.240746e-02	ci left: 3.649045e-03	ci right 3.769499e-03	k: 14576	n:3930000
KS ci ratio: 1.127213e-01	ci left: 2.902902e-04	ci right 3.252112e-04	k: 1208	n:3930000
PPP2R2B   3930000 perm   6478 sec   (607 perm/sec)   p_kst 3.073791e-04   p_cons 3.708906e-03   p_joint 2.239186e-05

Joint ci ratio: 4.155144e-01	ci left: 1.791338e-05	ci right 2.751730e-05	k: 88	n:3940000
Cons ci ratio: 3.236085e-02	ci left: 3.650358e-03	ci right 3.770678e-03	k: 14618	n:3940000
KS ci ratio: 1.125353e-01	ci left: 2.905401e-04	ci right 3.254296e-04	k: 1212	n:3940000
PPP2R2B   3940000 perm   6509 sec   (605 perm/sec)   p_kst 3.076142e-04   p_cons 3.710152e-03   p_joint 2.233503e-05

Joint ci ratio: 4.155144e-01	ci left: 1.786803e-05	ci right 2.744764e-05	k: 88	n:3950000
Cons ci ratio: 3.232552e-02	ci left: 3.649152e-03	ci right 3.769299e-03	k: 14650	n:3950000
KS ci ratio: 1.123502e-01	ci left: 2.907887e-04	ci right 3.256469e-04	k: 1216	n:3950000
PPP2R2B   3950000 perm   6540 sec   (604 perm/sec)   p_kst 3.078481e-04   p_cons 3.708861e-03   p_joint 2.227848e-05

Joint ci ratio: 4.155144e-01	ci left: 1.782291e-05	ci right 2.737833e-05	k: 88	n:3960000
Cons ci ratio: 3.228588e-02	ci left: 3.648954e-03	ci right 3.768945e-03	k: 14686	n:3960000
KS ci ratio: 1.122580e-01	ci left: 2.905453e-04	ci right 3.253438e-04	k: 1218	n:3960000
PPP2R2B   3960000 perm   6571 sec   (603 perm/sec)   p_kst 3.075758e-04   p_cons 3.708586e-03   p_joint 2.222222e-05

Joint ci ratio: 4.155145e-01	ci left: 1.777801e-05	ci right 2.730937e-05	k: 88	n:3970000
Cons ci ratio: 3.224089e-02	ci left: 3.650007e-03	ci right 3.769862e-03	k: 14727	n:3970000
KS ci ratio: 1.121660e-01	ci left: 2.903030e-04	ci right 3.250422e-04	k: 1220	n:3970000
PPP2R2B   3970000 perm   6603 sec   (601 perm/sec)   p_kst 3.073048e-04   p_cons 3.709572e-03   p_joint 2.216625e-05

Joint ci ratio: 4.131996e-01	ci left: 1.795841e-05	ci right 2.751806e-05	k: 89	n:3980000
Cons ci ratio: 3.220266e-02	ci left: 3.649559e-03	ci right 3.769255e-03	k: 14762	n:3980000
KS ci ratio: 1.119371e-01	ci left: 2.907947e-04	ci right 3.255169e-04	k: 1225	n:3980000
PPP2R2B   3980000 perm   6634 sec   (600 perm/sec)   p_kst 3.077889e-04   p_cons 3.709045e-03   p_joint 2.236181e-05

Joint ci ratio: 4.131996e-01	ci left: 1.791340e-05	ci right 2.744909e-05	k: 89	n:3990000
Cons ci ratio: 3.215475e-02	ci left: 3.651352e-03	ci right 3.770924e-03	k: 14806	n:3990000
KS ci ratio: 1.118004e-01	ci left: 2.907967e-04	ci right 3.254740e-04	k: 1228	n:3990000
PPP2R2B   3990000 perm   6666 sec   (599 perm/sec)   p_kst 3.077694e-04   p_cons 3.710777e-03   p_joint 2.230576e-05

Joint ci ratio: 4.131996e-01	ci left: 1.786861e-05	ci right 2.738047e-05	k: 89	n:4000000
Cons ci ratio: 3.210814e-02	ci left: 3.652887e-03	ci right 3.772333e-03	k: 14849	n:4000000
KS ci ratio: 1.117549e-01	ci left: 2.903128e-04	ci right 3.249173e-04	k: 1229	n:4000000
PPP2R2B   4000000 perm   6699 sec   (597 perm/sec)   p_kst 3.072500e-04   p_cons 3.712250e-03   p_joint 2.225000e-05

Joint ci ratio: 4.131996e-01	ci left: 1.782405e-05	ci right 2.731219e-05	k: 89	n:4010000
Cons ci ratio: 3.207038e-02	ci left: 3.652436e-03	ci right 3.771724e-03	k: 14884	n:4010000
KS ci ratio: 1.116189e-01	ci left: 2.903160e-04	ci right 3.248761e-04	k: 1232	n:4010000
PPP2R2B   4010000 perm   6731 sec   (596 perm/sec)   p_kst 3.072319e-04   p_cons 3.711721e-03   p_joint 2.219451e-05

Joint ci ratio: 4.131996e-01	ci left: 1.777972e-05	ci right 2.724425e-05	k: 89	n:4020000
Cons ci ratio: 3.203382e-02	ci left: 3.651740e-03	ci right 3.770867e-03	k: 14918	n:4020000
KS ci ratio: 1.113932e-01	ci left: 2.908029e-04	ci right 3.253464e-04	k: 1237	n:4020000
PPP2R2B   4020000 perm   6763 sec   (594 perm/sec)   p_kst 3.077114e-04   p_cons 3.710945e-03   p_joint 2.213930e-05

Joint ci ratio: 4.109230e-01	ci left: 1.795801e-05	ci right 2.745037e-05	k: 90	n:4030000
Cons ci ratio: 3.200062e-02	ci left: 3.650309e-03	ci right 3.769264e-03	k: 14949	n:4030000
KS ci ratio: 1.113034e-01	ci left: 2.905638e-04	ci right 3.250492e-04	k: 1239	n:4030000
PPP2R2B   4030000 perm   6795 sec   (593 perm/sec)   p_kst 3.074442e-04   p_cons 3.709429e-03   p_joint 2.233251e-05

Joint ci ratio: 4.086835e-01	ci left: 1.813556e-05	ci right 2.765533e-05	k: 91	n:4040000
Cons ci ratio: 3.196109e-02	ci left: 3.650359e-03	ci right 3.769166e-03	k: 14986	n:4040000
KS ci ratio: 1.109905e-01	ci left: 2.915291e-04	ci right 3.260254e-04	k: 1246	n:4040000
PPP2R2B   4040000 perm   6826 sec   (592 perm/sec)   p_kst 3.084158e-04   p_cons 3.709406e-03   p_joint 2.252475e-05

Joint ci ratio: 4.086836e-01	ci left: 1.809078e-05	ci right 2.758705e-05	k: 91	n:4050000
Cons ci ratio: 3.192598e-02	ci left: 3.649429e-03	ci right 3.768073e-03	k: 15019	n:4050000
KS ci ratio: 1.108572e-01	ci left: 2.915295e-04	ci right 3.259817e-04	k: 1249	n:4050000
PPP2R2B   4050000 perm   6857 sec   (591 perm/sec)   p_kst 3.083951e-04   p_cons 3.708395e-03   p_joint 2.246914e-05

Joint ci ratio: 4.086836e-01	ci left: 1.804623e-05	ci right 2.751910e-05	k: 91	n:4060000
Cons ci ratio: 3.189736e-02	ci left: 3.647037e-03	ci right 3.765495e-03	k: 15046	n:4060000
KS ci ratio: 1.106803e-01	ci left: 2.917693e-04	ci right 3.261913e-04	k: 1253	n:4060000
PPP2R2B   4060000 perm   6890 sec   (589 perm/sec)   p_kst 3.086207e-04   p_cons 3.705911e-03   p_joint 2.241379e-05

Joint ci ratio: 4.086836e-01	ci left: 1.800189e-05	ci right 2.745149e-05	k: 91	n:4070000
Cons ci ratio: 3.185822e-02	ci left: 3.647095e-03	ci right 3.765407e-03	k: 15083	n:4070000
KS ci ratio: 1.105921e-01	ci left: 2.915303e-04	ci right 3.258948e-04	k: 1255	n:4070000
PPP2R2B   4070000 perm   6922 sec   (588 perm/sec)   p_kst 3.083538e-04   p_cons 3.705897e-03   p_joint 2.235872e-05

Joint ci ratio: 3.424864e-01	ci left: 2.662131e-05	ci right 3.783431e-05	k: 130	n:4080000
Cons ci ratio: 3.181183e-02	ci left: 3.648854e-03	ci right 3.767048e-03	k: 15127	n:4080000
KS ci ratio: 1.102415e-01	ci left: 2.927224e-04	ci right 3.271110e-04	k: 1263	n:4080000
PPP2R2B   4080000 perm   6954 sec   (587 perm/sec)   p_kst 3.095588e-04   p_cons 3.707598e-03   p_joint 3.186275e-05

Joint ci ratio: 3.424865e-01	ci left: 2.655622e-05	ci right 3.774181e-05	k: 130	n:4090000
Cons ci ratio: 3.176984e-02	ci left: 3.649635e-03	ci right 3.767695e-03	k: 15167	n:4090000
KS ci ratio: 1.101544e-01	ci left: 2.924822e-04	ci right 3.268136e-04	k: 1265	n:4090000
PPP2R2B   4090000 perm   6988 sec   (585 perm/sec)   p_kst 3.092910e-04   p_cons 3.708313e-03   p_joint 3.178484e-05

Joint ci ratio: 3.411867e-01	ci left: 2.671441e-05	ci right 3.791451e-05	k: 131	n:4100000
Cons ci ratio: 3.172593e-02	ci left: 3.650896e-03	ci right 3.768831e-03	k: 15209	n:4100000
KS ci ratio: 1.099808e-01	ci left: 2.927176e-04	ci right 3.270190e-04	k: 1269	n:4100000
PPP2R2B   4100000 perm   7020 sec   (584 perm/sec)   p_kst 3.095122e-04   p_cons 3.709512e-03   p_joint 3.195122e-05

Joint ci ratio: 3.411867e-01	ci left: 2.664941e-05	ci right 3.782226e-05	k: 131	n:4110000
Cons ci ratio: 3.169263e-02	ci left: 3.649737e-03	ci right 3.767509e-03	k: 15241	n:4110000
KS ci ratio: 1.098511e-01	ci left: 2.927152e-04	ci right 3.269733e-04	k: 1272	n:4110000
PPP2R2B   4110000 perm   7052 sec   (583 perm/sec)   p_kst 3.094891e-04   p_cons 3.708273e-03   p_joint 3.187348e-05

Joint ci ratio: 3.411867e-01	ci left: 2.658473e-05	ci right 3.773046e-05	k: 131	n:4120000
Cons ci ratio: 3.165319e-02	ci left: 3.650029e-03	ci right 3.767660e-03	k: 15279	n:4120000
KS ci ratio: 1.095931e-01	ci left: 2.934211e-04	ci right 3.276759e-04	k: 1278	n:4120000
PPP2R2B   4120000 perm   7084 sec   (582 perm/sec)   p_kst 3.101942e-04   p_cons 3.708495e-03   p_joint 3.179612e-05

Joint ci ratio: 3.411867e-01	ci left: 2.652036e-05	ci right 3.763910e-05	k: 131	n:4130000
Cons ci ratio: 3.162012e-02	ci left: 3.648878e-03	ci right 3.766347e-03	k: 15311	n:4130000
KS ci ratio: 1.095503e-01	ci left: 2.929461e-04	ci right 3.271313e-04	k: 1279	n:4130000
PPP2R2B   4130000 perm   7116 sec   (580 perm/sec)   p_kst 3.096852e-04   p_cons 3.707264e-03   p_joint 3.171913e-05

Joint ci ratio: 3.411867e-01	ci left: 2.645630e-05	ci right 3.754819e-05	k: 131	n:4140000
Cons ci ratio: 3.158818e-02	ci left: 3.647493e-03	ci right 3.764797e-03	k: 15342	n:4140000
KS ci ratio: 1.094649e-01	ci left: 2.927084e-04	ci right 3.268375e-04	k: 1281	n:4140000
PPP2R2B   4140000 perm   7148 sec   (579 perm/sec)   p_kst 3.094203e-04   p_cons 3.705797e-03   p_joint 3.164251e-05

Joint ci ratio: 3.399016e-01	ci left: 2.661291e-05	ci right 3.771920e-05	k: 132	n:4150000
Cons ci ratio: 3.155634e-02	ci left: 3.646115e-03	ci right 3.763254e-03	k: 15373	n:4150000
KS ci ratio: 1.093796e-01	ci left: 2.924718e-04	ci right 3.265450e-04	k: 1283	n:4150000
PPP2R2B   4150000 perm   7181 sec   (578 perm/sec)   p_kst 3.091566e-04   p_cons 3.704337e-03   p_joint 3.180723e-05

Joint ci ratio: 3.399016e-01	ci left: 2.654894e-05	ci right 3.762853e-05	k: 132	n:4160000
Cons ci ratio: 3.151638e-02	ci left: 3.646651e-03	ci right 3.763657e-03	k: 15412	n:4160000
KS ci ratio: 1.093371e-01	ci left: 2.920025e-04	ci right 3.260070e-04	k: 1284	n:4160000
PPP2R2B   4160000 perm   7214 sec   (577 perm/sec)   p_kst 3.086538e-04   p_cons 3.704808e-03   p_joint 3.173077e-05

Joint ci ratio: 3.399016e-01	ci left: 2.648527e-05	ci right 3.753830e-05	k: 132	n:4170000
Cons ci ratio: 3.147862e-02	ci left: 3.646709e-03	ci right 3.763574e-03	k: 15449	n:4170000
KS ci ratio: 1.091673e-01	ci left: 2.922353e-04	ci right 3.262106e-04	k: 1288	n:4170000
PPP2R2B   4170000 perm   7246 sec   (575 perm/sec)   p_kst 3.088729e-04   p_cons 3.704796e-03   p_joint 3.165468e-05

Joint ci ratio: 3.386310e-01	ci left: 2.664076e-05	ci right 3.770803e-05	k: 133	n:4180000
Cons ci ratio: 3.144100e-02	ci left: 3.646767e-03	ci right 3.763491e-03	k: 15486	n:4180000
KS ci ratio: 1.089983e-01	ci left: 2.924670e-04	ci right 3.264133e-04	k: 1292	n:4180000
PPP2R2B   4180000 perm   7278 sec   (574 perm/sec)   p_kst 3.090909e-04   p_cons 3.704785e-03   p_joint 3.181818e-05

Joint ci ratio: 3.386310e-01	ci left: 2.657718e-05	ci right 3.761804e-05	k: 133	n:4190000
Cons ci ratio: 3.141265e-02	ci left: 3.644694e-03	ci right 3.761244e-03	k: 15514	n:4190000
KS ci ratio: 1.088300e-01	ci left: 2.926977e-04	ci right 3.266149e-04	k: 1296	n:4190000
PPP2R2B   4190000 perm   7311 sec   (573 perm/sec)   p_kst 3.093079e-04   p_cons 3.702625e-03   p_joint 3.174224e-05

Joint ci ratio: 3.386310e-01	ci left: 2.651390e-05	ci right 3.752847e-05	k: 133	n:4200000
Cons ci ratio: 3.138336e-02	ci left: 3.642866e-03	ci right 3.759248e-03	k: 15543	n:4200000
KS ci ratio: 1.087044e-01	ci left: 2.926956e-04	ci right 3.265709e-04	k: 1299	n:4200000
PPP2R2B   4200000 perm   7344 sec   (572 perm/sec)   p_kst 3.092857e-04   p_cons 3.700714e-03   p_joint 3.166667e-05

Joint ci ratio: 3.386310e-01	ci left: 2.645092e-05	ci right 3.743933e-05	k: 133	n:4210000
Cons ci ratio: 3.134103e-02	ci left: 3.644112e-03	ci right 3.760373e-03	k: 15585	n:4210000
KS ci ratio: 1.085375e-01	ci left: 2.929247e-04	ci right 3.267712e-04	k: 1303	n:4210000
PPP2R2B   4210000 perm   7377 sec   (571 perm/sec)   p_kst 3.095012e-04   p_cons 3.701900e-03   p_joint 3.159145e-05

Joint ci ratio: 3.386310e-01	ci left: 2.638824e-05	ci right 3.735061e-05	k: 133	n:4220000
Cons ci ratio: 3.130390e-02	ci left: 3.644175e-03	ci right 3.760299e-03	k: 15622	n:4220000
KS ci ratio: 1.083300e-01	ci left: 2.933833e-04	ci right 3.272138e-04	k: 1308	n:4220000
PPP2R2B   4220000 perm   7412 sec   (569 perm/sec)   p_kst 3.099526e-04   p_cons 3.701896e-03   p_joint 3.151659e-05

Joint ci ratio: 3.386310e-01	ci left: 2.632586e-05	ci right 3.726231e-05	k: 133	n:4230000
Cons ci ratio: 3.127792e-02	ci left: 3.641659e-03	ci right 3.757604e-03	k: 15648	n:4230000
KS ci ratio: 1.082474e-01	ci left: 2.931497e-04	ci right 3.269258e-04	k: 1310	n:4230000
PPP2R2B   4230000 perm   7446 sec   (568 perm/sec)   p_kst 3.096927e-04   p_cons 3.699291e-03   p_joint 3.144208e-05

Joint ci ratio: 3.373745e-01	ci left: 2.647961e-05	ci right 3.743022e-05	k: 134	n:4240000
Cons ci ratio: 3.124101e-02	ci left: 3.641728e-03	ci right 3.757536e-03	k: 15685	n:4240000
KS ci ratio: 1.080005e-01	ci left: 2.938351e-04	ci right 3.276081e-04	k: 1316	n:4240000
PPP2R2B   4240000 perm   7480 sec   (567 perm/sec)   p_kst 3.103774e-04   p_cons 3.699292e-03   p_joint 3.160377e-05

Joint ci ratio: 3.373745e-01	ci left: 2.641730e-05	ci right 3.734215e-05	k: 134	n:4250000
Cons ci ratio: 3.120124e-02	ci left: 3.642498e-03	ci right 3.758180e-03	k: 15725	n:4250000
KS ci ratio: 1.079186e-01	ci left: 2.936016e-04	ci right 3.273206e-04	k: 1318	n:4250000
PPP2R2B   4250000 perm   7515 sec   (566 perm/sec)   p_kst 3.101176e-04   p_cons 3.700000e-03   p_joint 3.152941e-05

Joint ci ratio: 3.373745e-01	ci left: 2.635529e-05	ci right 3.725449e-05	k: 134	n:4260000
Cons ci ratio: 3.115270e-02	ci left: 3.645360e-03	ci right 3.760950e-03	k: 15774	n:4260000
KS ci ratio: 1.078777e-01	ci left: 2.931408e-04	ci right 3.267933e-04	k: 1319	n:4260000
PPP2R2B   4260000 perm   7549 sec   (564 perm/sec)   p_kst 3.096244e-04   p_cons 3.702817e-03   p_joint 3.145540e-05

Joint ci ratio: 3.373745e-01	ci left: 2.629357e-05	ci right 3.716724e-05	k: 134	n:4270000
Cons ci ratio: 3.112710e-02	ci left: 3.642864e-03	ci right 3.758279e-03	k: 15800	n:4270000
KS ci ratio: 1.077961e-01	ci left: 2.929101e-04	ci right 3.265090e-04	k: 1321	n:4270000
PPP2R2B   4270000 perm   7583 sec   (563 perm/sec)   p_kst 3.093677e-04   p_cons 3.700234e-03   p_joint 3.138173e-05

Joint ci ratio: 3.373745e-01	ci left: 2.623213e-05	ci right 3.708041e-05	k: 134	n:4280000
Cons ci ratio: 3.108284e-02	ci left: 3.644785e-03	ci right 3.760093e-03	k: 15845	n:4280000
KS ci ratio: 1.076334e-01	ci left: 2.931351e-04	ci right 3.267059e-04	k: 1325	n:4280000
PPP2R2B   4280000 perm   7617 sec   (562 perm/sec)   p_kst 3.095794e-04   p_cons 3.702103e-03   p_joint 3.130841e-05

Joint ci ratio: 3.361319e-01	ci left: 2.638438e-05	ci right 3.724671e-05	k: 135	n:4290000
Cons ci ratio: 3.104662e-02	ci left: 3.644847e-03	ci right 3.760020e-03	k: 15882	n:4290000
KS ci ratio: 1.074714e-01	ci left: 2.933591e-04	ci right 3.269018e-04	k: 1329	n:4290000
PPP2R2B   4290000 perm   7650 sec   (561 perm/sec)   p_kst 3.097902e-04   p_cons 3.702098e-03   p_joint 3.146853e-05

Joint ci ratio: 3.361319e-01	ci left: 2.632302e-05	ci right 3.716009e-05	k: 135	n:4300000
Cons ci ratio: 3.101639e-02	ci left: 3.643524e-03	ci right 3.758541e-03	k: 15913	n:4300000
KS ci ratio: 1.073101e-01	ci left: 2.935821e-04	ci right 3.270967e-04	k: 1333	n:4300000
PPP2R2B   4300000 perm   7686 sec   (559 perm/sec)   p_kst 3.100000e-04   p_cons 3.700698e-03   p_joint 3.139535e-05

Joint ci ratio: 3.361319e-01	ci left: 2.626194e-05	ci right 3.707387e-05	k: 135	n:4310000
Cons ci ratio: 3.097552e-02	ci left: 3.644740e-03	ci right 3.759641e-03	k: 15955	n:4310000
KS ci ratio: 1.072700e-01	ci left: 2.931268e-04	ci right 3.265761e-04	k: 1334	n:4310000
PPP2R2B   4310000 perm   7720 sec   (558 perm/sec)   p_kst 3.095128e-04   p_cons 3.701856e-03   p_joint 3.132251e-05

Joint ci ratio: 3.349029e-01	ci left: 2.641313e-05	ci right 3.723896e-05	k: 136	n:4320000
Cons ci ratio: 3.093093e-02	ci left: 3.646868e-03	ci right 3.761669e-03	k: 16001	n:4320000
KS ci ratio: 1.071096e-01	ci left: 2.933493e-04	ci right 3.267708e-04	k: 1338	n:4320000
PPP2R2B   4320000 perm   7754 sec   (557 perm/sec)   p_kst 3.097222e-04   p_cons 3.703935e-03   p_joint 3.148148e-05

Joint ci ratio: 3.336872e-01	ci left: 2.656370e-05	ci right 3.740322e-05	k: 137	n:4330000
Cons ci ratio: 3.090394e-02	ci left: 3.644863e-03	ci right 3.759498e-03	k: 16029	n:4330000
KS ci ratio: 1.069898e-01	ci left: 2.933461e-04	ci right 3.267276e-04	k: 1341	n:4330000
PPP2R2B   4330000 perm   7790 sec   (556 perm/sec)   p_kst 3.096998e-04   p_cons 3.701848e-03   p_joint 3.163972e-05

Joint ci ratio: 3.336872e-01	ci left: 2.650249e-05	ci right 3.731704e-05	k: 137	n:4340000
Cons ci ratio: 3.086834e-02	ci left: 3.644924e-03	ci right 3.759427e-03	k: 16066	n:4340000
KS ci ratio: 1.069102e-01	ci left: 2.931187e-04	ci right 3.264479e-04	k: 1343	n:4340000
PPP2R2B   4340000 perm   7826 sec   (555 perm/sec)   p_kst 3.094470e-04   p_cons 3.701843e-03   p_joint 3.156682e-05

Joint ci ratio: 3.336872e-01	ci left: 2.644157e-05	ci right 3.723125e-05	k: 137	n:4350000
Cons ci ratio: 3.083670e-02	ci left: 3.644072e-03	ci right 3.758429e-03	k: 16099	n:4350000
KS ci ratio: 1.068308e-01	ci left: 2.928924e-04	ci right 3.261695e-04	k: 1345	n:4350000
PPP2R2B   4350000 perm   7861 sec   (553 perm/sec)   p_kst 3.091954e-04   p_cons 3.700920e-03   p_joint 3.149425e-05

Joint ci ratio: 3.336872e-01	ci left: 2.638092e-05	ci right 3.714586e-05	k: 137	n:4360000
Cons ci ratio: 3.079941e-02	ci left: 3.644590e-03	ci right 3.758823e-03	k: 16138	n:4360000
KS ci ratio: 1.066329e-01	ci left: 2.933368e-04	ci right 3.265988e-04	k: 1350	n:4360000
PPP2R2B   4360000 perm   7896 sec   (552 perm/sec)   p_kst 3.096330e-04   p_cons 3.701376e-03   p_joint 3.142202e-05

Joint ci ratio: 3.336873e-01	ci left: 2.632055e-05	ci right 3.706086e-05	k: 137	n:4370000
Cons ci ratio: 3.076321e-02	ci left: 3.644879e-03	ci right 3.758984e-03	k: 16176	n:4370000
KS ci ratio: 1.065934e-01	ci left: 2.928883e-04	ci right 3.260864e-04	k: 1351	n:4370000
PPP2R2B   4370000 perm   7930 sec   (551 perm/sec)   p_kst 3.091533e-04   p_cons 3.701602e-03   p_joint 3.135011e-05

Joint ci ratio: 3.324847e-01	ci left: 2.646968e-05	ci right 3.722358e-05	k: 138	n:4380000
Cons ci ratio: 3.071384e-02	ci left: 3.648339e-03	ci right 3.762365e-03	k: 16228	n:4380000
KS ci ratio: 1.065541e-01	ci left: 2.924418e-04	ci right 3.255763e-04	k: 1352	n:4380000
PPP2R2B   4380000 perm   7964 sec   (550 perm/sec)   p_kst 3.086758e-04   p_cons 3.705023e-03   p_joint 3.150685e-05

Joint ci ratio: 3.324848e-01	ci left: 2.640938e-05	ci right 3.713879e-05	k: 138	n:4390000
Cons ci ratio: 3.067604e-02	ci left: 3.649070e-03	ci right 3.762976e-03	k: 16268	n:4390000
KS ci ratio: 1.064754e-01	ci left: 2.922191e-04	ci right 3.253023e-04	k: 1354	n:4390000
PPP2R2B   4390000 perm   7999 sec   (549 perm/sec)   p_kst 3.084282e-04   p_cons 3.705695e-03   p_joint 3.143508e-05

Joint ci ratio: 3.324848e-01	ci left: 2.634936e-05	ci right 3.705438e-05	k: 138	n:4400000
Cons ci ratio: 3.063839e-02	ci left: 3.649798e-03	ci right 3.763584e-03	k: 16308	n:4400000
KS ci ratio: 1.063577e-01	ci left: 2.922186e-04	ci right 3.252630e-04	k: 1357	n:4400000
PPP2R2B   4400000 perm   8033 sec   (548 perm/sec)   p_kst 3.084091e-04   p_cons 3.706364e-03   p_joint 3.136364e-05

Joint ci ratio: 3.324848e-01	ci left: 2.628961e-05	ci right 3.697036e-05	k: 138	n:4410000
Cons ci ratio: 3.060558e-02	ci left: 3.649397e-03	ci right 3.763047e-03	k: 16343	n:4410000
KS ci ratio: 1.062405e-01	ci left: 2.922182e-04	ci right 3.252238e-04	k: 1360	n:4410000
PPP2R2B   4410000 perm   8068 sec   (547 perm/sec)   p_kst 3.083900e-04   p_cons 3.705896e-03   p_joint 3.129252e-05

Joint ci ratio: 3.324848e-01	ci left: 2.623013e-05	ci right 3.688671e-05	k: 138	n:4420000
Cons ci ratio: 3.057474e-02	ci left: 3.648549e-03	ci right 3.762057e-03	k: 16376	n:4420000
KS ci ratio: 1.061236e-01	ci left: 2.922178e-04	ci right 3.251847e-04	k: 1363	n:4420000
PPP2R2B   4420000 perm   8104 sec   (545 perm/sec)   p_kst 3.083710e-04   p_cons 3.704977e-03   p_joint 3.122172e-05

Joint ci ratio: 3.324848e-01	ci left: 2.617092e-05	ci right 3.680345e-05	k: 138	n:4430000
Cons ci ratio: 3.053933e-02	ci left: 3.648826e-03	ci right 3.762208e-03	k: 16414	n:4430000
KS ci ratio: 1.059683e-01	ci left: 2.924371e-04	ci right 3.253775e-04	k: 1367	n:4430000
PPP2R2B   4430000 perm   8139 sec   (544 perm/sec)   p_kst 3.085779e-04   p_cons 3.705192e-03   p_joint 3.115124e-05

Joint ci ratio: 3.324848e-01	ci left: 2.611198e-05	ci right 3.672056e-05	k: 138	n:4440000
Cons ci ratio: 3.050125e-02	ci left: 3.649772e-03	ci right 3.763039e-03	k: 16455	n:4440000
KS ci ratio: 1.058523e-01	ci left: 2.924362e-04	ci right 3.253383e-04	k: 1370	n:4440000
PPP2R2B   4440000 perm   8173 sec   (543 perm/sec)   p_kst 3.085586e-04   p_cons 3.706081e-03   p_joint 3.108108e-05

Joint ci ratio: 3.312952e-01	ci left: 2.625930e-05	ci right 3.688141e-05	k: 139	n:4450000
Cons ci ratio: 3.047443e-02	ci left: 3.648037e-03	ci right 3.761150e-03	k: 16484	n:4450000
KS ci ratio: 1.056982e-01	ci left: 2.926542e-04	ci right 3.255298e-04	k: 1374	n:4450000
PPP2R2B   4450000 perm   8209 sec   (542 perm/sec)   p_kst 3.087640e-04   p_cons 3.704270e-03   p_joint 3.123596e-05

Joint ci ratio: 3.312952e-01	ci left: 2.620042e-05	ci right 3.679872e-05	k: 139	n:4460000
Cons ci ratio: 3.044584e-02	ci left: 3.646755e-03	ci right 3.759720e-03	k: 16515	n:4460000
KS ci ratio: 1.055831e-01	ci left: 2.926529e-04	ci right 3.254904e-04	k: 1377	n:4460000
PPP2R2B   4460000 perm   8244 sec   (541 perm/sec)   p_kst 3.087444e-04   p_cons 3.702915e-03   p_joint 3.116592e-05

Joint ci ratio: 3.312952e-01	ci left: 2.614180e-05	ci right 3.671640e-05	k: 139	n:4470000
Cons ci ratio: 3.040811e-02	ci left: 3.647699e-03	ci right 3.760551e-03	k: 16556	n:4470000
KS ci ratio: 1.054683e-01	ci left: 2.926516e-04	ci right 3.254510e-04	k: 1380	n:4470000
PPP2R2B   4470000 perm   8279 sec   (540 perm/sec)   p_kst 3.087248e-04   p_cons 3.703803e-03   p_joint 3.109620e-05

Joint ci ratio: 3.312953e-01	ci left: 2.608345e-05	ci right 3.663444e-05	k: 139	n:4480000
Cons ci ratio: 3.037511e-02	ci left: 3.647532e-03	ci right 3.760254e-03	k: 16592	n:4480000
KS ci ratio: 1.053159e-01	ci left: 2.928677e-04	ci right 3.256410e-04	k: 1384	n:4480000
PPP2R2B   4480000 perm   8315 sec   (539 perm/sec)   p_kst 3.089286e-04   p_cons 3.703571e-03   p_joint 3.102679e-05

Joint ci ratio: 3.312953e-01	ci left: 2.602536e-05	ci right 3.655285e-05	k: 139	n:4490000
Cons ci ratio: 3.034588e-02	ci left: 3.646481e-03	ci right 3.759060e-03	k: 16624	n:4490000
KS ci ratio: 1.052779e-01	ci left: 2.924323e-04	ci right 3.251443e-04	k: 1385	n:4490000
PPP2R2B   4490000 perm   8351 sec   (538 perm/sec)   p_kst 3.084633e-04   p_cons 3.702450e-03   p_joint 3.095768e-05

Joint ci ratio: 3.312953e-01	ci left: 2.596753e-05	ci right 3.647162e-05	k: 139	n:4500000
Cons ci ratio: 3.029483e-02	ci left: 3.650728e-03	ci right 3.763245e-03	k: 16680	n:4500000
KS ci ratio: 1.051263e-01	ci left: 2.926479e-04	ci right 3.253340e-04	k: 1389	n:4500000
PPP2R2B   4500000 perm   8387 sec   (537 perm/sec)   p_kst 3.086667e-04   p_cons 3.706667e-03   p_joint 3.088889e-05

Joint ci ratio: 3.312953e-01	ci left: 2.590995e-05	ci right 3.639075e-05	k: 139	n:4510000
Cons ci ratio: 3.026129e-02	ci left: 3.650775e-03	ci right 3.763167e-03	k: 16717	n:4510000
KS ci ratio: 1.050508e-01	ci left: 2.924308e-04	ci right 3.250678e-04	k: 1391	n:4510000
PPP2R2B   4510000 perm   8422 sec   (535 perm/sec)   p_kst 3.084257e-04   p_cons 3.706652e-03   p_joint 3.082040e-05

Joint ci ratio: 3.312953e-01	ci left: 2.585263e-05	ci right 3.631024e-05	k: 139	n:4520000
Cons ci ratio: 3.022243e-02	ci left: 3.652140e-03	ci right 3.764427e-03	k: 16760	n:4520000
KS ci ratio: 1.048626e-01	ci left: 2.928610e-04	ci right 3.254838e-04	k: 1396	n:4520000
PPP2R2B   4520000 perm   8458 sec   (534 perm/sec)   p_kst 3.088496e-04   p_cons 3.707965e-03   p_joint 3.075221e-05

Joint ci ratio: 3.312953e-01	ci left: 2.579556e-05	ci right 3.623009e-05	k: 139	n:4530000
Cons ci ratio: 3.019183e-02	ci left: 3.651526e-03	ci right 3.763679e-03	k: 16794	n:4530000
KS ci ratio: 1.047876e-01	ci left: 2.926445e-04	ci right 3.252184e-04	k: 1398	n:4530000
PPP2R2B   4530000 perm   8493 sec   (533 perm/sec)   p_kst 3.086093e-04   p_cons 3.707285e-03   p_joint 3.068433e-05

Joint ci ratio: 3.312953e-01	ci left: 2.573874e-05	ci right 3.615029e-05	k: 139	n:4540000
Cons ci ratio: 3.015863e-02	ci left: 3.651572e-03	ci right 3.763600e-03	k: 16831	n:4540000
KS ci ratio: 1.046755e-01	ci left: 2.926434e-04	ci right 3.251801e-04	k: 1401	n:4540000
PPP2R2B   4540000 perm   8528 sec   (532 perm/sec)   p_kst 3.085903e-04   p_cons 3.707269e-03   p_joint 3.061674e-05

Joint ci ratio: 3.312953e-01	ci left: 2.568217e-05	ci right 3.607084e-05	k: 139	n:4550000
Cons ci ratio: 3.012464e-02	ci left: 3.651835e-03	ci right 3.763743e-03	k: 16869	n:4550000
KS ci ratio: 1.046382e-01	ci left: 2.922142e-04	ci right 3.246910e-04	k: 1402	n:4550000
PPP2R2B   4550000 perm   8564 sec   (531 perm/sec)   p_kst 3.081319e-04   p_cons 3.707473e-03   p_joint 3.054945e-05

Joint ci ratio: 3.312953e-01	ci left: 2.562585e-05	ci right 3.599173e-05	k: 139	n:4560000
Cons ci ratio: 3.009255e-02	ci left: 3.651662e-03	ci right 3.763444e-03	k: 16905	n:4560000
KS ci ratio: 1.044893e-01	ci left: 2.924276e-04	ci right 3.248791e-04	k: 1406	n:4560000
PPP2R2B   4560000 perm   8598 sec   (530 perm/sec)   p_kst 3.083333e-04   p_cons 3.707237e-03   p_joint 3.048246e-05

Joint ci ratio: 3.312954e-01	ci left: 2.556977e-05	ci right 3.591298e-05	k: 139	n:4570000
Cons ci ratio: 3.006235e-02	ci left: 3.651055e-03	ci right 3.762704e-03	k: 16939	n:4570000
KS ci ratio: 1.043411e-01	ci left: 2.926402e-04	ci right 3.250663e-04	k: 1410	n:4570000
PPP2R2B   4570000 perm   8635 sec   (529 perm/sec)   p_kst 3.085339e-04   p_cons 3.706565e-03   p_joint 3.041575e-05

Joint ci ratio: 3.301184e-01	ci left: 2.571416e-05	ci right 3.607097e-05	k: 140	n:4580000
Cons ci ratio: 3.002336e-02	ci left: 3.652618e-03	ci right 3.764168e-03	k: 16983	n:4580000
KS ci ratio: 1.041567e-01	ci left: 2.930645e-04	ci right 3.254767e-04	k: 1415	n:4580000
PPP2R2B   4580000 perm   8670 sec   (528 perm/sec)   p_kst 3.089520e-04   p_cons 3.708079e-03   p_joint 3.056769e-05

Joint ci ratio: 3.301184e-01	ci left: 2.565814e-05	ci right 3.599238e-05	k: 140	n:4590000
Cons ci ratio: 2.999336e-02	ci left: 3.652012e-03	ci right 3.763430e-03	k: 17017	n:4590000
KS ci ratio: 1.040832e-01	ci left: 2.928504e-04	ci right 3.252147e-04	k: 1417	n:4590000
PPP2R2B   4590000 perm   8706 sec   (527 perm/sec)   p_kst 3.087146e-04   p_cons 3.707407e-03   p_joint 3.050109e-05

Joint ci ratio: 3.289540e-01	ci left: 2.580177e-05	ci right 3.614945e-05	k: 141	n:4600000
Cons ci ratio: 2.995552e-02	ci left: 3.653351e-03	ci right 3.764667e-03	k: 17060	n:4600000
KS ci ratio: 1.039733e-01	ci left: 2.928489e-04	ci right 3.251768e-04	k: 1420	n:4600000
PPP2R2B   4600000 perm   8743 sec   (526 perm/sec)   p_kst 3.086957e-04   p_cons 3.708696e-03   p_joint 3.065217e-05

Joint ci ratio: 3.289540e-01	ci left: 2.574580e-05	ci right 3.607104e-05	k: 141	n:4610000
Cons ci ratio: 2.991344e-02	ci left: 3.655760e-03	ci right 3.766990e-03	k: 17108	n:4610000
KS ci ratio: 1.038637e-01	ci left: 2.928475e-04	ci right 3.251391e-04	k: 1423	n:4610000
PPP2R2B   4610000 perm   8780 sec   (525 perm/sec)   p_kst 3.086768e-04   p_cons 3.711063e-03   p_joint 3.058568e-05

Joint ci ratio: 3.278018e-01	ci left: 2.588868e-05	ci right 3.622719e-05	k: 142	n:4620000
Cons ci ratio: 2.987502e-02	ci left: 3.657300e-03	ci right 3.768431e-03	k: 17152	n:4620000
KS ci ratio: 1.036456e-01	ci left: 2.934787e-04	ci right 3.257677e-04	k: 1429	n:4620000
PPP2R2B   4620000 perm   8816 sec   (524 perm/sec)   p_kst 3.093074e-04   p_cons 3.712554e-03   p_joint 3.073593e-05

Joint ci ratio: 3.278018e-01	ci left: 2.583276e-05	ci right 3.614895e-05	k: 142	n:4630000
Cons ci ratio: 2.984286e-02	ci left: 3.657333e-03	ci right 3.768343e-03	k: 17189	n:4630000
KS ci ratio: 1.034288e-01	ci left: 2.941072e-04	ci right 3.263936e-04	k: 1435	n:4630000
PPP2R2B   4630000 perm   8853 sec   (523 perm/sec)   p_kst 3.099352e-04   p_cons 3.712527e-03   p_joint 3.066955e-05

Joint ci ratio: 3.278018e-01	ci left: 2.577709e-05	ci right 3.607104e-05	k: 142	n:4640000
Cons ci ratio: 2.981079e-02	ci left: 3.657365e-03	ci right 3.768256e-03	k: 17226	n:4640000
KS ci ratio: 1.032850e-01	ci left: 2.943131e-04	ci right 3.265745e-04	k: 1439	n:4640000
PPP2R2B   4640000 perm   8889 sec   (522 perm/sec)   p_kst 3.101293e-04   p_cons 3.712500e-03   p_joint 3.060345e-05

Joint ci ratio: 3.278018e-01	ci left: 2.572165e-05	ci right 3.599347e-05	k: 142	n:4650000
Cons ci ratio: 2.978056e-02	ci left: 3.656971e-03	ci right 3.767735e-03	k: 17261	n:4650000
KS ci ratio: 1.032134e-01	ci left: 2.940992e-04	ci right 3.263134e-04	k: 1441	n:4650000
PPP2R2B   4650000 perm   8925 sec   (521 perm/sec)   p_kst 3.098925e-04   p_cons 3.712043e-03   p_joint 3.053763e-05

Joint ci ratio: 3.278018e-01	ci left: 2.566646e-05	ci right 3.591623e-05	k: 142	n:4660000
Cons ci ratio: 2.975733e-02	ci left: 3.654874e-03	ci right 3.765487e-03	k: 17288	n:4660000
KS ci ratio: 1.030705e-01	ci left: 2.943043e-04	ci right 3.264936e-04	k: 1445	n:4660000
PPP2R2B   4660000 perm   8961 sec   (520 perm/sec)   p_kst 3.100858e-04   p_cons 3.709871e-03   p_joint 3.047210e-05

Joint ci ratio: 3.255332e-01	ci left: 2.600465e-05	ci right 3.630258e-05	k: 144	n:4670000
Cons ci ratio: 2.972037e-02	ci left: 3.656187e-03	ci right 3.766700e-03	k: 17331	n:4670000
KS ci ratio: 1.028928e-01	ci left: 2.947172e-04	ci right 3.268927e-04	k: 1450	n:4670000
PPP2R2B   4670000 perm   8998 sec   (519 perm/sec)   p_kst 3.104925e-04   p_cons 3.711135e-03   p_joint 3.083512e-05

Joint ci ratio: 3.244164e-01	ci left: 2.614533e-05	ci right 3.645606e-05	k: 145	n:4680000
Cons ci ratio: 2.969814e-02	ci left: 3.653889e-03	ci right 3.764248e-03	k: 17357	n:4680000
KS ci ratio: 1.027159e-01	ci left: 2.951283e-04	ci right 3.272901e-04	k: 1455	n:4680000
PPP2R2B   4680000 perm   9034 sec   (518 perm/sec)   p_kst 3.108974e-04   p_cons 3.708761e-03   p_joint 3.098291e-05

Joint ci ratio: 3.244164e-01	ci left: 2.608958e-05	ci right 3.637832e-05	k: 145	n:4690000
Cons ci ratio: 2.966055e-02	ci left: 3.655410e-03	ci right 3.765673e-03	k: 17401	n:4690000
KS ci ratio: 1.026103e-01	ci left: 2.951223e-04	ci right 3.272483e-04	k: 1458	n:4690000
PPP2R2B   4690000 perm   9071 sec   (517 perm/sec)   p_kst 3.108742e-04   p_cons 3.710235e-03   p_joint 3.091684e-05

Joint ci ratio: 3.233111e-01	ci left: 2.622954e-05	ci right 3.653093e-05	k: 146	n:4700000
Cons ci ratio: 2.962822e-02	ci left: 3.655658e-03	ci right 3.765806e-03	k: 17439	n:4700000
KS ci ratio: 1.025049e-01	ci left: 2.951163e-04	ci right 3.272067e-04	k: 1461	n:4700000
PPP2R2B   4700000 perm   9108 sec   (516 perm/sec)   p_kst 3.108511e-04   p_cons 3.710426e-03   p_joint 3.106383e-05

Joint ci ratio: 3.233111e-01	ci left: 2.617385e-05	ci right 3.645337e-05	k: 146	n:4710000
Cons ci ratio: 2.959429e-02	ci left: 3.656326e-03	ci right 3.766366e-03	k: 17479	n:4710000
KS ci ratio: 1.023999e-01	ci left: 2.951103e-04	ci right 3.271652e-04	k: 1464	n:4710000
PPP2R2B   4710000 perm   9145 sec   (515 perm/sec)   p_kst 3.108280e-04   p_cons 3.711040e-03   p_joint 3.099788e-05

Joint ci ratio: 3.222169e-01	ci left: 2.631310e-05	ci right 3.660510e-05	k: 147	n:4720000
Cons ci ratio: 2.956641e-02	ci left: 3.655519e-03	ci right 3.765430e-03	k: 17512	n:4720000
KS ci ratio: 1.023650e-01	ci left: 2.946916e-04	ci right 3.266894e-04	k: 1465	n:4720000
PPP2R2B   4720000 perm   9182 sec   (514 perm/sec)   p_kst 3.103814e-04   p_cons 3.710169e-03   p_joint 3.114407e-05

Joint ci ratio: 3.211338e-01	ci left: 2.645182e-05	ci right 3.675614e-05	k: 148	n:4730000
Cons ci ratio: 2.952847e-02	ci left: 3.657235e-03	ci right 3.767053e-03	k: 17557	n:4730000
KS ci ratio: 1.021909e-01	ci left: 2.950986e-04	ci right 3.270828e-04	k: 1470	n:4730000
PPP2R2B   4730000 perm   9220 sec   (513 perm/sec)   p_kst 3.107822e-04   p_cons 3.711839e-03   p_joint 3.128964e-05

Joint ci ratio: 3.211338e-01	ci left: 2.639601e-05	ci right 3.667860e-05	k: 148	n:4740000
Cons ci ratio: 2.949993e-02	ci left: 3.656639e-03	ci right 3.766332e-03	k: 17591	n:4740000
KS ci ratio: 1.021562e-01	ci left: 2.946816e-04	ci right 3.266091e-04	k: 1471	n:4740000
PPP2R2B   4740000 perm   9258 sec   (512 perm/sec)   p_kst 3.103376e-04   p_cons 3.711181e-03   p_joint 3.122363e-05

Joint ci ratio: 3.211338e-01	ci left: 2.634044e-05	ci right 3.660138e-05	k: 148	n:4750000
Cons ci ratio: 2.945806e-02	ci left: 3.659390e-03	ci right 3.769006e-03	k: 17641	n:4750000
KS ci ratio: 1.018452e-01	ci left: 2.959076e-04	ci right 3.278646e-04	k: 1480	n:4750000
PPP2R2B   4750000 perm   9296 sec   (511 perm/sec)   p_kst 3.115789e-04   p_cons 3.713895e-03   p_joint 3.115789e-05

Joint ci ratio: 3.211339e-01	ci left: 2.628511e-05	ci right 3.652449e-05	k: 148	n:4760000
Cons ci ratio: 2.942304e-02	ci left: 3.660460e-03	ci right 3.769977e-03	k: 17683	n:4760000
KS ci ratio: 1.017423e-01	ci left: 2.959002e-04	ci right 3.278221e-04	k: 1483	n:4760000
PPP2R2B   4760000 perm   9333 sec   (510 perm/sec)   p_kst 3.115546e-04   p_cons 3.714916e-03   p_joint 3.109244e-05

Joint ci ratio: 3.200616e-01	ci left: 2.642278e-05	ci right 3.667437e-05	k: 149	n:4770000
Cons ci ratio: 2.938898e-02	ci left: 3.661319e-03	ci right 3.770732e-03	k: 17724	n:4770000
KS ci ratio: 1.014691e-01	ci left: 2.969144e-04	ci right 3.288546e-04	k: 1491	n:4770000
PPP2R2B   4770000 perm   9370 sec   (509 perm/sec)   p_kst 3.125786e-04   p_cons 3.715723e-03   p_joint 3.123690e-05

Joint ci ratio: 3.200616e-01	ci left: 2.636750e-05	ci right 3.659765e-05	k: 149	n:4780000
Cons ci ratio: 2.936416e-02	ci left: 3.659889e-03	ci right 3.769165e-03	k: 17754	n:4780000
KS ci ratio: 1.014011e-01	ci left: 2.967010e-04	ci right 3.285956e-04	k: 1493	n:4780000
PPP2R2B   4780000 perm   9408 sec   (508 perm/sec)   p_kst 3.123431e-04   p_cons 3.714226e-03   p_joint 3.117155e-05

Joint ci ratio: 3.200616e-01	ci left: 2.631245e-05	ci right 3.652124e-05	k: 149	n:4790000
Cons ci ratio: 2.933113e-02	ci left: 3.660538e-03	ci right 3.769709e-03	k: 17794	n:4790000
KS ci ratio: 1.011981e-01	ci left: 2.973025e-04	ci right 3.291939e-04	k: 1499	n:4790000
PPP2R2B   4790000 perm   9447 sec   (507 perm/sec)   p_kst 3.129436e-04   p_cons 3.714823e-03   p_joint 3.110647e-05

Joint ci ratio: 3.190000e-01	ci left: 2.644926e-05	ci right 3.667014e-05	k: 150	n:4800000
Cons ci ratio: 2.930811e-02	ci left: 3.658702e-03	ci right 3.767731e-03	k: 17822	n:4800000
KS ci ratio: 1.010298e-01	ci left: 2.976984e-04	ci right 3.295761e-04	k: 1504	n:4800000
PPP2R2B   4800000 perm   9484 sec   (506 perm/sec)   p_kst 3.133333e-04   p_cons 3.712917e-03   p_joint 3.125000e-05

Joint ci ratio: 3.190000e-01	ci left: 2.639427e-05	ci right 3.659391e-05	k: 150	n:4810000
Cons ci ratio: 2.926951e-02	ci left: 3.660796e-03	ci right 3.769741e-03	k: 17869	n:4810000
KS ci ratio: 1.008624e-01	ci left: 2.980927e-04	ci right 3.299566e-04	k: 1509	n:4810000
PPP2R2B   4810000 perm   9522 sec   (505 perm/sec)   p_kst 3.137214e-04   p_cons 3.714969e-03   p_joint 3.118503e-05

Joint ci ratio: 3.190000e-01	ci left: 2.633951e-05	ci right 3.651799e-05	k: 150	n:4820000
Cons ci ratio: 2.924090e-02	ci left: 3.660409e-03	ci right 3.769234e-03	k: 17904	n:4820000
KS ci ratio: 1.006958e-01	ci left: 2.984855e-04	ci right 3.303356e-04	k: 1514	n:4820000
PPP2R2B   4820000 perm   9561 sec   (504 perm/sec)   p_kst 3.141079e-04   p_cons 3.714523e-03   p_joint 3.112033e-05

Joint ci ratio: 3.190001e-01	ci left: 2.628498e-05	ci right 3.644238e-05	k: 150	n:4830000
Cons ci ratio: 2.921073e-02	ci left: 3.660435e-03	ci right 3.769147e-03	k: 17941	n:4830000
KS ci ratio: 1.005963e-01	ci left: 2.984730e-04	ci right 3.302884e-04	k: 1517	n:4830000
PPP2R2B   4830000 perm   9600 sec   (503 perm/sec)   p_kst 3.140787e-04   p_cons 3.714493e-03   p_joint 3.105590e-05

Joint ci ratio: 3.190001e-01	ci left: 2.623067e-05	ci right 3.636709e-05	k: 150	n:4840000
Cons ci ratio: 2.918636e-02	ci left: 3.659025e-03	ci right 3.767603e-03	k: 17971	n:4840000
KS ci ratio: 1.004310e-01	ci left: 2.988634e-04	ci right 3.306650e-04	k: 1522	n:4840000
PPP2R2B   4840000 perm   9638 sec   (502 perm/sec)   p_kst 3.144628e-04   p_cons 3.713017e-03   p_joint 3.099174e-05

Joint ci ratio: 3.190001e-01	ci left: 2.617659e-05	ci right 3.629210e-05	k: 150	n:4850000
Cons ci ratio: 2.916124e-02	ci left: 3.657826e-03	ci right 3.766273e-03	k: 18002	n:4850000
KS ci ratio: 1.003981e-01	ci left: 2.984482e-04	ci right 3.301946e-04	k: 1523	n:4850000
PPP2R2B   4850000 perm   9676 sec   (501 perm/sec)   p_kst 3.140206e-04   p_cons 3.711753e-03   p_joint 3.092784e-05

Joint ci ratio: 3.190001e-01	ci left: 2.612273e-05	ci right 3.621743e-05	k: 150	n:4860000
Cons ci ratio: 2.913376e-02	ci left: 3.657244e-03	ci right 3.765571e-03	k: 18036	n:4860000
KS ci ratio: 1.003981e-01	ci left: 2.978341e-04	ci right 3.295152e-04	k: 1523	n:4860000
PPP2R2B   4860000 perm   9713 sec   (500 perm/sec)   p_kst 3.133745e-04   p_cons 3.711111e-03   p_joint 3.086420e-05

Joint ci ratio: 3.190001e-01	ci left: 2.606909e-05	ci right 3.614306e-05	k: 150	n:4870000
Cons ci ratio: 2.910473e-02	ci left: 3.657073e-03	ci right 3.765284e-03	k: 18072	n:4870000
KS ci ratio: 1.003323e-01	ci left: 2.976229e-04	ci right 3.292595e-04	k: 1525	n:4870000
PPP2R2B   4870000 perm   9751 sec   (499 perm/sec)   p_kst 3.131417e-04   p_cons 3.710883e-03   p_joint 3.080082e-05

Joint ci ratio: 3.190001e-01	ci left: 2.601567e-05	ci right 3.606900e-05	k: 150	n:4880000
Cons ci ratio: 2.908304e-02	ci left: 3.655071e-03	ci right 3.763142e-03	k: 18099	n:4880000
KS ci ratio: 1.002666e-01	ci left: 2.974126e-04	ci right 3.290049e-04	k: 1527	n:4880000
PPP2R2B   4880000 perm   9789 sec   (499 perm/sec)   p_kst 3.129098e-04   p_cons 3.708811e-03   p_joint 3.073770e-05

Joint ci ratio: 3.179490e-01	ci left: 2.615062e-05	ci right 3.621602e-05	k: 151	n:4890000
Cons ci ratio: 2.905095e-02	ci left: 3.655717e-03	ci right 3.763686e-03	k: 18139	n:4890000
KS ci ratio: 1.001356e-01	ci left: 2.976019e-04	ci right 3.291706e-04	k: 1531	n:4890000
PPP2R2B   4890000 perm   9826 sec   (498 perm/sec)   p_kst 3.130879e-04   p_cons 3.709407e-03   p_joint 3.087935e-05

Joint ci ratio: 3.179490e-01	ci left: 2.609725e-05	ci right 3.614211e-05	k: 151	n:4900000
Cons ci ratio: 2.902217e-02	ci left: 3.655550e-03	ci right 3.763405e-03	k: 18175	n:4900000
KS ci ratio: 1.000703e-01	ci left: 2.973925e-04	ci right 3.289172e-04	k: 1533	n:4900000
PPP2R2B   4900000 perm   9864 sec   (497 perm/sec)   p_kst 3.128571e-04   p_cons 3.709184e-03   p_joint 3.081633e-05

Joint ci ratio: 3.169082e-01	ci left: 2.623154e-05	ci right 3.628834e-05	k: 152	n:4910000
Cons ci ratio: 2.899507e-02	ci left: 3.654980e-03	ci right 3.762715e-03	k: 18209	n:4910000
KS ci ratio: 9.990763e-02	ci left: 2.977796e-04	ci right 3.292911e-04	k: 1538	n:4910000
PPP2R2B   4910000 perm   9903 sec   (496 perm/sec)   p_kst 3.132383e-04   p_cons 3.708554e-03   p_joint 3.095723e-05

Joint ci ratio: 3.169083e-01	ci left: 2.617822e-05	ci right 3.621459e-05	k: 152	n:4920000
Cons ci ratio: 2.896566e-02	ci left: 3.655017e-03	ci right 3.762642e-03	k: 18246	n:4920000
KS ci ratio: 9.984278e-02	ci left: 2.975708e-04	ci right 3.290385e-04	k: 1540	n:4920000
PPP2R2B   4920000 perm   9943 sec   (495 perm/sec)   p_kst 3.130081e-04   p_cons 3.708537e-03   p_joint 3.089431e-05

Joint ci ratio: 3.169083e-01	ci left: 2.612512e-05	ci right 3.614113e-05	k: 152	n:4930000
Cons ci ratio: 2.893396e-02	ci left: 3.655658e-03	ci right 3.763182e-03	k: 18286	n:4930000
KS ci ratio: 9.974574e-02	ci left: 2.975605e-04	ci right 3.289947e-04	k: 1543	n:4930000
PPP2R2B   4930000 perm   9981 sec   (494 perm/sec)   p_kst 3.129817e-04   p_cons 3.709128e-03   p_joint 3.083164e-05

Joint ci ratio: 3.169083e-01	ci left: 2.607224e-05	ci right 3.606797e-05	k: 152	n:4940000
Cons ci ratio: 2.890473e-02	ci left: 3.655693e-03	ci right 3.763108e-03	k: 18323	n:4940000
KS ci ratio: 9.968121e-02	ci left: 2.973529e-04	ci right 3.287437e-04	k: 1545	n:4940000
PPP2R2B   4940000 perm   10020 sec   (493 perm/sec)   p_kst 3.127530e-04   p_cons 3.709109e-03   p_joint 3.076923e-05

Joint ci ratio: 3.169083e-01	ci left: 2.601957e-05	ci right 3.599510e-05	k: 152	n:4950000
Cons ci ratio: 2.887244e-02	ci left: 3.656531e-03	ci right 3.763849e-03	k: 18364	n:4950000
KS ci ratio: 9.961681e-02	ci left: 2.971462e-04	ci right 3.284937e-04	k: 1547	n:4950000
PPP2R2B   4950000 perm   10060 sec   (492 perm/sec)   p_kst 3.125253e-04   p_cons 3.709899e-03   p_joint 3.070707e-05

Joint ci ratio: 3.169083e-01	ci left: 2.596711e-05	ci right 3.592253e-05	k: 152	n:4960000
Cons ci ratio: 2.884261e-02	ci left: 3.656765e-03	ci right 3.763977e-03	k: 18402	n:4960000
KS ci ratio: 9.958467e-02	ci left: 2.967437e-04	ci right 3.280381e-04	k: 1548	n:4960000
PPP2R2B   4960000 perm   10100 sec   (491 perm/sec)   p_kst 3.120968e-04   p_cons 3.710081e-03   p_joint 3.064516e-05

Joint ci ratio: 3.158777e-01	ci left: 2.610009e-05	ci right 3.606739e-05	k: 153	n:4970000
Cons ci ratio: 2.880895e-02	ci left: 3.657997e-03	ci right 3.765118e-03	k: 18445	n:4970000
KS ci ratio: 9.945633e-02	ci left: 2.969314e-04	ci right 3.282029e-04	k: 1552	n:4970000
PPP2R2B   4970000 perm   10140 sec   (490 perm/sec)   p_kst 3.122736e-04   p_cons 3.711268e-03   p_joint 3.078471e-05

Joint ci ratio: 3.158777e-01	ci left: 2.604768e-05	ci right 3.599496e-05	k: 153	n:4980000
Cons ci ratio: 2.876761e-02	ci left: 3.661218e-03	ci right 3.768276e-03	k: 18498	n:4980000
KS ci ratio: 9.932849e-02	ci left: 2.971184e-04	ci right 3.283670e-04	k: 1556	n:4980000
PPP2R2B   4980000 perm   10179 sec   (489 perm/sec)   p_kst 3.124498e-04   p_cons 3.714458e-03   p_joint 3.072289e-05

Joint ci ratio: 3.158777e-01	ci left: 2.599548e-05	ci right 3.592283e-05	k: 153	n:4990000
Cons ci ratio: 2.873733e-02	ci left: 3.661640e-03	ci right 3.768596e-03	k: 18537	n:4990000
KS ci ratio: 9.923293e-02	ci left: 2.971092e-04	ci right 3.283251e-04	k: 1559	n:4990000
PPP2R2B   4990000 perm   10218 sec   (488 perm/sec)   p_kst 3.124248e-04   p_cons 3.714830e-03   p_joint 3.066132e-05

Joint ci ratio: 3.148571e-01	ci left: 2.612767e-05	ci right 3.606676e-05	k: 154	n:5000000
Cons ci ratio: 2.871024e-02	ci left: 3.661266e-03	ci right 3.768110e-03	k: 18572	n:5000000
KS ci ratio: 9.907427e-02	ci left: 2.974902e-04	ci right 3.286932e-04	k: 1564	n:5000000
PPP2R2B   5000000 perm   10258 sec   (487 perm/sec)   p_kst 3.128000e-04   p_cons 3.714400e-03   p_joint 3.080000e-05

Outputting figure to mutsig2_images.part000000000136/PPP2R2B.3_1506_5000000_0.0003128_0.0037144_3.08e-05.png
                gene_name: PPP2R2B
               theta_stop: 0.31 
                    nperm: 5000000 
                     p_ks: 0.00031 
        ci_ks_bounds_left: 0.00030 
       ci_ks_bounds_right: 0.00033 
                   p_cons: 0.0037 
      ci_cons_bounds_left: 0.0037 
     ci_cons_bounds_right: 0.0038 
                  p_joint: 3.08e-05 
     ci_joint_bounds_left: 2.61e-05 
    ci_joint_bounds_right: 3.61e-05 

Current progress: 57 percent done.
PPP2R5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.983582e-02	ci left: 2.912258e-01	ci right 3.092906e-01	k: 3002	n:10000
Cons ci ratio: 6.098002e-02	ci left: 2.833972e-01	ci right 3.013239e-01	k: 2923	n:10000
KS ci ratio: 6.318812e-02	ci left: 2.690368e-01	ci right 2.866928e-01	k: 2778	n:10000
PPP2R5C   10000 perm   1 sec   (6677 perm/sec)   p_kst 2.778000e-01   p_cons 2.923000e-01   p_joint 3.002000e-01

Outputting figure to mutsig2_images.part000000000136/PPP2R5C.3_2024_10000_0.2778_0.2923_0.3002.png
                gene_name: PPP2R5C
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 59 percent done.
PPP3CA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.658079e-02	ci left: 4.048206e-01	ci right 4.242292e-01	k: 4145	n:10000
Cons ci ratio: 4.757356e-02	ci left: 3.946604e-01	ci right 4.139954e-01	k: 4043	n:10000
KS ci ratio: 4.450408e-02	ci left: 4.270484e-01	ci right 4.465885e-01	k: 4368	n:10000
PPP3CA   10000 perm   1 sec   (6895 perm/sec)   p_kst 4.368000e-01   p_cons 4.043000e-01   p_joint 4.145000e-01

Outputting figure to mutsig2_images.part000000000136/PPP3CA.3_1622_10000_0.4368_0.4043_0.4145.png
                gene_name: PPP3CA
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 61 percent done.
PPP5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.386340e-02	ci left: 7.207785e-01	ci right 7.382876e-01	k: 7296	n:10000
Cons ci ratio: 3.295165e-02	ci left: 5.761720e-01	ci right 5.955779e-01	k: 5859	n:10000
KS ci ratio: 3.076409e-02	ci left: 6.091973e-01	ci right 6.283334e-01	k: 6188	n:10000
PPP5C   10000 perm   1 sec   (6818 perm/sec)   p_kst 6.188000e-01   p_cons 5.859000e-01   p_joint 7.296000e-01

Outputting figure to mutsig2_images.part000000000136/PPP5C.3_1552_10000_0.6188_0.5859_0.7296.png
                gene_name: PPP5C
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 63 percent done.
PPP6C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.145032e-01	ci left: 9.886244e-02	ci right 1.109688e-01	k: 1048	n:10000
Cons ci ratio: 5.663503e-02	ci left: 3.146312e-01	ci right 3.330715e-01	k: 3238	n:10000
KS ci ratio: 1.286912e-01	ci left: 7.941135e-02	ci right 9.043186e-02	k: 848	n:10000
PPP6C   10000 perm   1 sec   (7204 perm/sec)   p_kst 8.480000e-02   p_cons 3.238000e-01   p_joint 1.048000e-01

Joint ci ratio: 9.428489e-02	ci left: 7.578721e-02	ci right 8.333556e-02	k: 1590	n:20000
Cons ci ratio: 3.949584e-02	ci left: 3.234337e-01	ci right 3.365158e-01	k: 6599	n:20000
KS ci ratio: 8.903753e-02	ci left: 8.440281e-02	ci right 9.231734e-02	k: 1766	n:20000
PPP6C   20000 perm   3 sec   (6312 perm/sec)   p_kst 8.830000e-02   p_cons 3.299500e-01   p_joint 7.950000e-02

Outputting figure to mutsig2_images.part000000000136/PPP6C.3_1061_20000_0.0883_0.32995_0.0795.png
                gene_name: PPP6C
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.083 

Current progress: 65 percent done.
PQLC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.357978e-02	ci left: 8.866742e-01	ci right 8.988959e-01	k: 8929	n:10000
KS ci ratio: 1.717362e-02	ci left: 8.316480e-01	ci right 8.461540e-01	k: 8390	n:10000
PQLC2   10000 perm   1 sec   (7244 perm/sec)   p_kst 8.390000e-01   p_cons 8.929000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PQLC2.3_904_10000_0.839_0.8929_1.png
                gene_name: PQLC2
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
PPIL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.204299e-02	ci left: 2.763642e-01	ci right 2.941611e-01	k: 2852	n:10000
Cons ci ratio: 2.831517e-02	ci left: 6.477018e-01	ci right 6.664067e-01	k: 6571	n:10000
KS ci ratio: 9.103792e-02	ci left: 1.492334e-01	ci right 1.635673e-01	k: 1563	n:10000
PPIL6   10000 perm   1 sec   (7370 perm/sec)   p_kst 1.563000e-01   p_cons 6.571000e-01   p_joint 2.852000e-01

Outputting figure to mutsig2_images.part000000000136/PPIL6.2_1050_10000_0.1563_0.6571_0.2852.png
                gene_name: PPIL6
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 69 percent done.
PPM1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.424714e-03	ci left: 9.784504e-01	ci right 9.838641e-01	k: 9813	n:10000
KS ci ratio: 4.817119e-02	ci left: 3.886858e-01	ci right 4.079734e-01	k: 3983	n:10000
PPM1B   10000 perm   1 sec   (7084 perm/sec)   p_kst 3.983000e-01   p_cons 9.813000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPM1B.2_1527_10000_0.3983_0.9813_1.png
                gene_name: PPM1B
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
PPM1K
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.821783e-02	ci left: 8.147659e-01	ci right 8.298458e-01	k: 8224	n:10000
KS ci ratio: 9.821929e-03	ci left: 9.362019e-01	ci right 9.455392e-01	k: 9410	n:10000
PPM1K   10000 perm   1 sec   (7293 perm/sec)   p_kst 9.410000e-01   p_cons 8.224000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPM1K.2_1143_10000_0.941_0.8224_1.png
                gene_name: PPM1K
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
PPME1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
Cons ci ratio: 1.140181e-01	ci left: 9.964203e-02	ci right 1.117887e-01	k: 1056	n:10000
KS ci ratio: 2.258952e-02	ci left: 7.420988e-01	ci right 7.591550e-01	k: 7507	n:10000
PPME1   10000 perm   1 sec   (7549 perm/sec)   p_kst 7.507000e-01   p_cons 1.056000e-01   p_joint 3.267000e-01

Joint ci ratio: 3.984223e-02	ci left: 3.196038e-01	ci right 3.326468e-01	k: 6522	n:20000
Cons ci ratio: 8.105386e-02	ci left: 1.004404e-01	ci right 1.089749e-01	k: 2093	n:20000
KS ci ratio: 1.598400e-02	ci left: 7.443913e-01	ci right 7.564358e-01	k: 15009	n:20000
PPME1   20000 perm   3 sec   (6553 perm/sec)   p_kst 7.504500e-01   p_cons 1.046500e-01   p_joint 3.261000e-01

Outputting figure to mutsig2_images.part000000000136/PPME1.2_1217_20000_0.75045_0.10465_0.3261.png
                gene_name: PPME1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 74 percent done.
PPP1CB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.991661e-01	ci left: 1.458544e-03	ci right 3.449143e-03	k: 23	n:10000
Cons ci ratio: 2.295756e-02	ci left: 7.359324e-01	ci right 7.531249e-01	k: 7446	n:10000
KS ci ratio: 7.991661e-01	ci left: 1.458544e-03	ci right 3.449143e-03	k: 23	n:10000
PPP1CB   10000 perm   1 sec   (7408 perm/sec)   p_kst 2.300000e-03   p_cons 7.446000e-01   p_joint 2.300000e-03

Joint ci ratio: 6.115581e-01	ci left: 1.429202e-03	ci right 2.722447e-03	k: 40	n:20000
Cons ci ratio: 1.615894e-02	ci left: 7.402594e-01	ci right 7.523689e-01	k: 14927	n:20000
KS ci ratio: 6.115581e-01	ci left: 1.429202e-03	ci right 2.722447e-03	k: 40	n:20000
PPP1CB   20000 perm   3 sec   (6463 perm/sec)   p_kst 2.000000e-03   p_cons 7.463500e-01   p_joint 2.000000e-03

Joint ci ratio: 5.233342e-01	ci left: 1.381407e-03	ci right 2.385675e-03	k: 55	n:30000
Cons ci ratio: 1.387099e-02	ci left: 7.218532e-01	ci right 7.319694e-01	k: 21808	n:30000
KS ci ratio: 5.233342e-01	ci left: 1.381407e-03	ci right 2.385675e-03	k: 55	n:30000
PPP1CB   30000 perm   5 sec   (6056 perm/sec)   p_kst 1.833333e-03   p_cons 7.269333e-01   p_joint 1.833333e-03

Joint ci ratio: 4.522124e-01	ci left: 1.452919e-03	ci right 2.321957e-03	k: 74	n:40000
Cons ci ratio: 1.198795e-02	ci left: 7.233590e-01	ci right 7.321079e-01	k: 29110	n:40000
KS ci ratio: 4.522124e-01	ci left: 1.452919e-03	ci right 2.321957e-03	k: 74	n:40000
PPP1CB   40000 perm   7 sec   (5813 perm/sec)   p_kst 1.850000e-03   p_cons 7.277500e-01   p_joint 1.850000e-03

Joint ci ratio: 4.061028e-01	ci left: 1.483550e-03	ci right 2.256126e-03	k: 92	n:50000
Cons ci ratio: 1.072048e-02	ci left: 7.238956e-01	ci right 7.317179e-01	k: 36391	n:50000
KS ci ratio: 4.061028e-01	ci left: 1.483550e-03	ci right 2.256126e-03	k: 92	n:50000
PPP1CB   50000 perm   9 sec   (5639 perm/sec)   p_kst 1.840000e-03   p_cons 7.278200e-01   p_joint 1.840000e-03

Joint ci ratio: 3.717225e-01	ci left: 1.507011e-03	ci right 2.209247e-03	k: 110	n:60000
Cons ci ratio: 9.794328e-03	ci left: 7.239181e-01	ci right 7.310599e-01	k: 43650	n:60000
KS ci ratio: 3.717225e-01	ci left: 1.507011e-03	ci right 2.209247e-03	k: 110	n:60000
PPP1CB   60000 perm   11 sec   (5495 perm/sec)   p_kst 1.833333e-03   p_cons 7.275000e-01   p_joint 1.833333e-03

Joint ci ratio: 3.475256e-01	ci left: 1.499663e-03	ci right 2.142762e-03	k: 126	n:70000
Cons ci ratio: 9.085437e-03	ci left: 7.234108e-01	ci right 7.300275e-01	k: 50871	n:70000
KS ci ratio: 3.475256e-01	ci left: 1.499663e-03	ci right 2.142762e-03	k: 126	n:70000
PPP1CB   70000 perm   13 sec   (5316 perm/sec)   p_kst 1.800000e-03   p_cons 7.267286e-01   p_joint 1.800000e-03

Joint ci ratio: 3.095912e-01	ci left: 1.690817e-03	ci right 2.321174e-03	k: 159	n:80000
Cons ci ratio: 8.498462e-03	ci left: 7.236350e-01	ci right 7.298235e-01	k: 58139	n:80000
KS ci ratio: 3.095912e-01	ci left: 1.690817e-03	ci right 2.321174e-03	k: 159	n:80000
PPP1CB   80000 perm   16 sec   (5137 perm/sec)   p_kst 1.987500e-03   p_cons 7.267375e-01   p_joint 1.987500e-03

Joint ci ratio: 2.977439e-01	ci left: 1.636384e-03	ci right 2.218692e-03	k: 172	n:90000
Cons ci ratio: 8.003102e-03	ci left: 7.242773e-01	ci right 7.301081e-01	k: 65448	n:90000
KS ci ratio: 2.977439e-01	ci left: 1.636384e-03	ci right 2.218692e-03	k: 172	n:90000
PPP1CB   90000 perm   18 sec   (5048 perm/sec)   p_kst 1.911111e-03   p_cons 7.272000e-01   p_joint 1.911111e-03

Joint ci ratio: 2.826285e-01	ci left: 1.648927e-03	ci right 2.200604e-03	k: 191	n:100000
Cons ci ratio: 7.596048e-03	ci left: 7.242373e-01	ci right 7.297695e-01	k: 72701	n:100000
KS ci ratio: 2.826285e-01	ci left: 1.648927e-03	ci right 2.200604e-03	k: 191	n:100000
PPP1CB   100000 perm   20 sec   (4945 perm/sec)   p_kst 1.910000e-03   p_cons 7.270100e-01   p_joint 1.910000e-03

Joint ci ratio: 2.722011e-01	ci left: 1.625903e-03	ci right 2.146377e-03	k: 206	n:110000
Cons ci ratio: 7.242401e-03	ci left: 7.243750e-01	ci right 7.296494e-01	k: 79972	n:110000
KS ci ratio: 2.722011e-01	ci left: 1.625903e-03	ci right 2.146377e-03	k: 206	n:110000
PPP1CB   110000 perm   23 sec   (4865 perm/sec)   p_kst 1.872727e-03   p_cons 7.270182e-01   p_joint 1.872727e-03

Joint ci ratio: 2.599323e-01	ci left: 1.645968e-03	ci right 2.145263e-03	k: 226	n:120000
Cons ci ratio: 6.935700e-03	ci left: 7.243945e-01	ci right 7.294445e-01	k: 87231	n:120000
KS ci ratio: 2.599323e-01	ci left: 1.645968e-03	ci right 2.145263e-03	k: 226	n:120000
PPP1CB   120000 perm   25 sec   (4788 perm/sec)   p_kst 1.883333e-03   p_cons 7.269250e-01   p_joint 1.883333e-03

Joint ci ratio: 2.476831e-01	ci left: 1.685034e-03	ci right 2.168385e-03	k: 249	n:130000
Cons ci ratio: 6.658088e-03	ci left: 7.248239e-01	ci right 7.296736e-01	k: 94543	n:130000
KS ci ratio: 2.476831e-01	ci left: 1.685034e-03	ci right 2.168385e-03	k: 249	n:130000
PPP1CB   130000 perm   28 sec   (4714 perm/sec)   p_kst 1.915385e-03   p_cons 7.272538e-01   p_joint 1.915385e-03

Joint ci ratio: 2.383326e-01	ci left: 1.698837e-03	ci right 2.165035e-03	k: 269	n:140000
Cons ci ratio: 6.415726e-03	ci left: 7.249231e-01	ci right 7.295961e-01	k: 101817	n:140000
KS ci ratio: 2.383326e-01	ci left: 1.698837e-03	ci right 2.165035e-03	k: 269	n:140000
PPP1CB   140000 perm   30 sec   (4632 perm/sec)   p_kst 1.921429e-03   p_cons 7.272643e-01   p_joint 1.921429e-03

Joint ci ratio: 2.315726e-01	ci left: 1.685969e-03	ci right 2.133635e-03	k: 285	n:150000
Cons ci ratio: 6.193561e-03	ci left: 7.252992e-01	ci right 7.298120e-01	k: 109134	n:150000
KS ci ratio: 2.315726e-01	ci left: 1.685969e-03	ci right 2.133635e-03	k: 285	n:150000
PPP1CB   150000 perm   33 sec   (4562 perm/sec)   p_kst 1.900000e-03   p_cons 7.275600e-01   p_joint 1.900000e-03

Joint ci ratio: 2.224246e-01	ci left: 1.722073e-03	ci right 2.158791e-03	k: 309	n:160000
Cons ci ratio: 6.000257e-03	ci left: 7.251482e-01	ci right 7.295186e-01	k: 116374	n:160000
KS ci ratio: 2.224246e-01	ci left: 1.722073e-03	ci right 2.158791e-03	k: 309	n:160000
PPP1CB   160000 perm   36 sec   (4487 perm/sec)   p_kst 1.931250e-03   p_cons 7.273375e-01   p_joint 1.931250e-03

Joint ci ratio: 2.159067e-01	ci left: 1.726406e-03	ci right 2.149692e-03	k: 328	n:170000
Cons ci ratio: 5.828389e-03	ci left: 7.247163e-01	ci right 7.289584e-01	k: 123563	n:170000
KS ci ratio: 2.159067e-01	ci left: 1.726406e-03	ci right 2.149692e-03	k: 328	n:170000
PPP1CB   170000 perm   39 sec   (4412 perm/sec)   p_kst 1.929412e-03   p_cons 7.268412e-01   p_joint 1.929412e-03

Joint ci ratio: 2.075535e-01	ci left: 1.772547e-03	ci right 2.188199e-03	k: 355	n:180000
Cons ci ratio: 5.673403e-03	ci left: 7.241281e-01	ci right 7.282535e-01	k: 130715	n:180000
KS ci ratio: 2.075535e-01	ci left: 1.772547e-03	ci right 2.188199e-03	k: 355	n:180000
PPP1CB   180000 perm   41 sec   (4346 perm/sec)   p_kst 1.972222e-03   p_cons 7.261944e-01   p_joint 1.972222e-03

Joint ci ratio: 2.019579e-01	ci left: 1.779123e-03	ci right 2.183682e-03	k: 375	n:190000
Cons ci ratio: 5.522300e-03	ci left: 7.241678e-01	ci right 7.281832e-01	k: 137974	n:190000
KS ci ratio: 2.019579e-01	ci left: 1.779123e-03	ci right 2.183682e-03	k: 375	n:190000
PPP1CB   190000 perm   44 sec   (4283 perm/sec)   p_kst 1.973684e-03   p_cons 7.261789e-01   p_joint 1.973684e-03

Joint ci ratio: 1.967918e-01	ci left: 1.785176e-03	ci right 2.179482e-03	k: 395	n:200000
Cons ci ratio: 5.383000e-03	ci left: 7.241799e-01	ci right 7.280936e-01	k: 145228	n:200000
KS ci ratio: 1.967918e-01	ci left: 1.785176e-03	ci right 2.179482e-03	k: 395	n:200000
PPP1CB   200000 perm   48 sec   (4208 perm/sec)   p_kst 1.975000e-03   p_cons 7.261400e-01   p_joint 1.975000e-03

Joint ci ratio: 1.917721e-01	ci left: 1.795305e-03	ci right 2.180554e-03	k: 416	n:210000
Cons ci ratio: 5.249837e-03	ci left: 7.244878e-01	ci right 7.283060e-01	k: 152544	n:210000
KS ci ratio: 1.917721e-01	ci left: 1.795305e-03	ci right 2.180554e-03	k: 416	n:210000
PPP1CB   210000 perm   51 sec   (4144 perm/sec)   p_kst 1.980952e-03   p_cons 7.264000e-01   p_joint 1.980952e-03

Joint ci ratio: 1.866913e-01	ci left: 1.813295e-03	ci right 2.190928e-03	k: 439	n:220000
Cons ci ratio: 5.131775e-03	ci left: 7.243269e-01	ci right 7.280580e-01	k: 159763	n:220000
KS ci ratio: 1.866913e-01	ci left: 1.813295e-03	ci right 2.190928e-03	k: 439	n:220000
PPP1CB   220000 perm   54 sec   (4086 perm/sec)   p_kst 1.995455e-03   p_cons 7.261955e-01   p_joint 1.995455e-03

Joint ci ratio: 1.829867e-01	ci left: 1.809095e-03	ci right 2.177549e-03	k: 457	n:230000
Cons ci ratio: 5.017656e-03	ci left: 7.244729e-01	ci right 7.281214e-01	k: 167049	n:230000
KS ci ratio: 1.829867e-01	ci left: 1.809095e-03	ci right 2.177549e-03	k: 457	n:230000
PPP1CB   230000 perm   57 sec   (4029 perm/sec)   p_kst 1.986957e-03   p_cons 7.263000e-01   p_joint 1.986957e-03

Joint ci ratio: 1.802547e-01	ci left: 1.789396e-03	ci right 2.147802e-03	k: 471	n:240000
Cons ci ratio: 4.911186e-03	ci left: 7.245782e-01	ci right 7.281496e-01	k: 174328	n:240000
KS ci ratio: 1.802547e-01	ci left: 1.789396e-03	ci right 2.147802e-03	k: 471	n:240000
PPP1CB   240000 perm   60 sec   (3968 perm/sec)   p_kst 1.962500e-03   p_cons 7.263667e-01   p_joint 1.962500e-03

Joint ci ratio: 1.769136e-01	ci left: 1.786602e-03	ci right 2.137106e-03	k: 489	n:250000
Cons ci ratio: 4.810975e-03	ci left: 7.246959e-01	ci right 7.281948e-01	k: 181612	n:250000
KS ci ratio: 1.769136e-01	ci left: 1.786602e-03	ci right 2.137106e-03	k: 489	n:250000
PPP1CB   250000 perm   64 sec   (3907 perm/sec)   p_kst 1.956000e-03   p_cons 7.264480e-01   p_joint 1.956000e-03

Joint ci ratio: 1.737516e-01	ci left: 1.784079e-03	ci right 2.127176e-03	k: 507	n:260000
Cons ci ratio: 4.721224e-03	ci left: 7.244199e-01	ci right 7.278520e-01	k: 188796	n:260000
KS ci ratio: 1.737516e-01	ci left: 1.784079e-03	ci right 2.127176e-03	k: 507	n:260000
PPP1CB   260000 perm   67 sec   (3853 perm/sec)   p_kst 1.950000e-03   p_cons 7.261385e-01   p_joint 1.950000e-03

Joint ci ratio: 1.699458e-01	ci left: 1.799524e-03	ci right 2.137235e-03	k: 530	n:270000
Cons ci ratio: 4.633805e-03	ci left: 7.243802e-01	ci right 7.277483e-01	k: 196038	n:270000
KS ci ratio: 1.699458e-01	ci left: 1.799524e-03	ci right 2.137235e-03	k: 530	n:270000
PPP1CB   270000 perm   71 sec   (3798 perm/sec)   p_kst 1.962963e-03   p_cons 7.260667e-01   p_joint 1.962963e-03

Joint ci ratio: 1.648952e-01	ci left: 1.848179e-03	ci right 2.183691e-03	k: 563	n:280000
Cons ci ratio: 4.549476e-03	ci left: 7.244834e-01	ci right 7.277905e-01	k: 203319	n:280000
KS ci ratio: 1.648952e-01	ci left: 1.848179e-03	ci right 2.183691e-03	k: 563	n:280000
PPP1CB   280000 perm   75 sec   (3740 perm/sec)   p_kst 2.010714e-03   p_cons 7.261393e-01   p_joint 2.010714e-03

Joint ci ratio: 1.628877e-01	ci left: 1.830743e-03	ci right 2.158647e-03	k: 577	n:290000
Cons ci ratio: 4.472728e-03	ci left: 7.243002e-01	ci right 7.275505e-01	k: 210519	n:290000
KS ci ratio: 1.628877e-01	ci left: 1.830743e-03	ci right 2.158647e-03	k: 577	n:290000
PPP1CB   290000 perm   79 sec   (3689 perm/sec)   p_kst 1.989655e-03   p_cons 7.259276e-01   p_joint 1.989655e-03

Joint ci ratio: 1.592096e-01	ci left: 1.856094e-03	ci right 2.180314e-03	k: 604	n:300000
Cons ci ratio: 4.398225e-03	ci left: 7.242666e-01	ci right 7.274624e-01	k: 217760	n:300000
KS ci ratio: 1.592096e-01	ci left: 1.856094e-03	ci right 2.180314e-03	k: 604	n:300000
PPP1CB   300000 perm   82 sec   (3640 perm/sec)   p_kst 2.013333e-03   p_cons 7.258667e-01   p_joint 2.013333e-03

Joint ci ratio: 1.566416e-01	ci left: 1.858186e-03	ci right 2.177044e-03	k: 624	n:310000
Cons ci ratio: 4.327148e-03	ci left: 7.242517e-01	ci right 7.273957e-01	k: 225006	n:310000
KS ci ratio: 1.566416e-01	ci left: 1.858186e-03	ci right 2.177044e-03	k: 624	n:310000
PPP1CB   310000 perm   86 sec   (3586 perm/sec)   p_kst 2.012903e-03   p_cons 7.258258e-01   p_joint 2.012903e-03

Joint ci ratio: 1.538359e-01	ci left: 1.869202e-03	ci right 2.183676e-03	k: 647	n:320000
Cons ci ratio: 4.258340e-03	ci left: 7.243384e-01	ci right 7.274325e-01	k: 232284	n:320000
KS ci ratio: 1.538359e-01	ci left: 1.869202e-03	ci right 2.183676e-03	k: 647	n:320000
PPP1CB   320000 perm   90 sec   (3540 perm/sec)   p_kst 2.021875e-03   p_cons 7.258875e-01   p_joint 2.021875e-03

Joint ci ratio: 1.519721e-01	ci left: 1.859188e-03	ci right 2.167843e-03	k: 663	n:330000
Cons ci ratio: 4.191404e-03	ci left: 7.245446e-01	ci right 7.275908e-01	k: 239603	n:330000
KS ci ratio: 1.519721e-01	ci left: 1.859188e-03	ci right 2.167843e-03	k: 663	n:330000
PPP1CB   330000 perm   94 sec   (3496 perm/sec)   p_kst 2.009091e-03   p_cons 7.260697e-01   p_joint 2.009091e-03

Joint ci ratio: 1.499537e-01	ci left: 1.855447e-03	ci right 2.159023e-03	k: 681	n:340000
Cons ci ratio: 4.130212e-03	ci left: 7.244798e-01	ci right 7.274811e-01	k: 246834	n:340000
KS ci ratio: 1.499537e-01	ci left: 1.855447e-03	ci right 2.159023e-03	k: 681	n:340000
PPP1CB   340000 perm   98 sec   (3457 perm/sec)   p_kst 2.002941e-03   p_cons 7.259824e-01   p_joint 2.002941e-03

Joint ci ratio: 1.484392e-01	ci left: 1.840940e-03	ci right 2.138830e-03	k: 695	n:350000
Cons ci ratio: 4.072648e-03	ci left: 7.243188e-01	ci right 7.272775e-01	k: 254030	n:350000
KS ci ratio: 1.484392e-01	ci left: 1.840940e-03	ci right 2.138830e-03	k: 695	n:350000
PPP1CB   350000 perm   102 sec   (3416 perm/sec)   p_kst 1.985714e-03   p_cons 7.258000e-01   p_joint 1.985714e-03

Joint ci ratio: 1.465566e-01	ci left: 1.837958e-03	ci right 2.131262e-03	k: 713	n:360000
Cons ci ratio: 4.016413e-03	ci left: 7.242672e-01	ci right 7.271847e-01	k: 261262	n:360000
KS ci ratio: 1.465566e-01	ci left: 1.837958e-03	ci right 2.131262e-03	k: 713	n:360000
PPP1CB   360000 perm   107 sec   (3376 perm/sec)   p_kst 1.980556e-03   p_cons 7.257278e-01   p_joint 1.980556e-03

Joint ci ratio: 1.440553e-01	ci left: 1.853395e-03	ci right 2.143682e-03	k: 738	n:370000
Cons ci ratio: 3.961155e-03	ci left: 7.243486e-01	ci right 7.272262e-01	k: 268542	n:370000
KS ci ratio: 1.440553e-01	ci left: 1.853395e-03	ci right 2.143682e-03	k: 738	n:370000
PPP1CB   370000 perm   111 sec   (3334 perm/sec)   p_kst 1.994595e-03   p_cons 7.257892e-01   p_joint 1.994595e-03

Joint ci ratio: 1.422385e-01	ci left: 1.852831e-03	ci right 2.139059e-03	k: 757	n:380000
Cons ci ratio: 3.910080e-03	ci left: 7.242257e-01	ci right 7.270656e-01	k: 275746	n:380000
KS ci ratio: 1.422385e-01	ci left: 1.852831e-03	ci right 2.139059e-03	k: 757	n:380000
PPP1CB   380000 perm   116 sec   (3290 perm/sec)   p_kst 1.992105e-03   p_cons 7.256474e-01   p_joint 1.992105e-03

Joint ci ratio: 1.402179e-01	ci left: 1.859740e-03	ci right 2.142613e-03	k: 779	n:390000
Cons ci ratio: 3.858493e-03	ci left: 7.243610e-01	ci right 7.271639e-01	k: 283048	n:390000
KS ci ratio: 1.402179e-01	ci left: 1.859740e-03	ci right 2.142613e-03	k: 779	n:390000
PPP1CB   390000 perm   120 sec   (3248 perm/sec)   p_kst 1.997436e-03   p_cons 7.257641e-01   p_joint 1.997436e-03

Joint ci ratio: 1.385409e-01	ci left: 1.859090e-03	ci right 2.138203e-03	k: 798	n:400000
Cons ci ratio: 3.808920e-03	ci left: 7.244872e-01	ci right 7.272545e-01	k: 290349	n:400000
KS ci ratio: 1.385409e-01	ci left: 1.859090e-03	ci right 2.138203e-03	k: 798	n:400000
PPP1CB   400000 perm   125 sec   (3205 perm/sec)   p_kst 1.995000e-03   p_cons 7.258725e-01   p_joint 1.995000e-03

Joint ci ratio: 1.365052e-01	ci left: 1.870270e-03	ci right 2.146600e-03	k: 822	n:410000
Cons ci ratio: 3.762153e-03	ci left: 7.245074e-01	ci right 7.272406e-01	k: 297609	n:410000
KS ci ratio: 1.365052e-01	ci left: 1.870270e-03	ci right 2.146600e-03	k: 822	n:410000
PPP1CB   410000 perm   130 sec   (3164 perm/sec)   p_kst 2.004878e-03   p_cons 7.258756e-01   p_joint 2.004878e-03

Joint ci ratio: 1.347962e-01	ci left: 1.874043e-03	ci right 2.147186e-03	k: 843	n:420000
Cons ci ratio: 3.717269e-03	ci left: 7.245053e-01	ci right 7.272059e-01	k: 304860	n:420000
KS ci ratio: 1.347962e-01	ci left: 1.874043e-03	ci right 2.147186e-03	k: 843	n:420000
PPP1CB   420000 perm   134 sec   (3127 perm/sec)   p_kst 2.007143e-03   p_cons 7.258571e-01   p_joint 2.007143e-03

Joint ci ratio: 1.333817e-01	ci left: 1.870917e-03	ci right 2.140516e-03	k: 861	n:430000
Cons ci ratio: 3.672579e-03	ci left: 7.246526e-01	ci right 7.273211e-01	k: 312175	n:430000
KS ci ratio: 1.333817e-01	ci left: 1.870917e-03	ci right 2.140516e-03	k: 861	n:430000
PPP1CB   430000 perm   139 sec   (3091 perm/sec)   p_kst 2.002326e-03   p_cons 7.259884e-01   p_joint 2.002326e-03

Joint ci ratio: 1.317112e-01	ci left: 1.876738e-03	ci right 2.143524e-03	k: 883	n:440000
Cons ci ratio: 3.630665e-03	ci left: 7.246613e-01	ci right 7.272993e-01	k: 319432	n:440000
KS ci ratio: 1.317112e-01	ci left: 1.876738e-03	ci right 2.143524e-03	k: 883	n:440000
PPP1CB   440000 perm   144 sec   (3058 perm/sec)   p_kst 2.006818e-03   p_cons 7.259818e-01   p_joint 2.006818e-03

Joint ci ratio: 1.299583e-01	ci left: 1.886621e-03	ci right 2.150968e-03	k: 907	n:450000
Cons ci ratio: 3.588771e-03	ci left: 7.248234e-01	ci right 7.274315e-01	k: 326758	n:450000
KS ci ratio: 1.299583e-01	ci left: 1.886621e-03	ci right 2.150968e-03	k: 907	n:450000
PPP1CB   450000 perm   149 sec   (3025 perm/sec)   p_kst 2.015556e-03   p_cons 7.261289e-01   p_joint 2.015556e-03

Joint ci ratio: 1.288987e-01	ci left: 1.877160e-03	ci right 2.137872e-03	k: 922	n:460000
Cons ci ratio: 3.548312e-03	ci left: 7.249764e-01	ci right 7.275555e-01	k: 334083	n:460000
KS ci ratio: 1.288987e-01	ci left: 1.877160e-03	ci right 2.137872e-03	k: 922	n:460000
PPP1CB   460000 perm   154 sec   (2989 perm/sec)   p_kst 2.004348e-03   p_cons 7.262674e-01   p_joint 2.004348e-03

Joint ci ratio: 1.278646e-01	ci left: 1.868110e-03	ci right 2.125325e-03	k: 937	n:470000
Cons ci ratio: 3.509040e-03	ci left: 7.251401e-01	ci right 7.276912e-01	k: 341416	n:470000
KS ci ratio: 1.278646e-01	ci left: 1.868110e-03	ci right 2.125325e-03	k: 937	n:470000
PPP1CB   470000 perm   159 sec   (2956 perm/sec)   p_kst 1.993617e-03   p_cons 7.264170e-01   p_joint 1.993617e-03

Joint ci ratio: 1.262590e-01	ci left: 1.877602e-03	ci right 2.132636e-03	k: 961	n:480000
Cons ci ratio: 3.472644e-03	ci left: 7.251135e-01	ci right 7.276380e-01	k: 348661	n:480000
KS ci ratio: 1.262590e-01	ci left: 1.877602e-03	ci right 2.132636e-03	k: 961	n:480000
PPP1CB   480000 perm   164 sec   (2922 perm/sec)   p_kst 2.002083e-03   p_cons 7.263771e-01   p_joint 2.002083e-03

Joint ci ratio: 1.248394e-01	ci left: 1.882772e-03	ci right 2.135419e-03	k: 983	n:490000
Cons ci ratio: 3.437411e-03	ci left: 7.250820e-01	ci right 7.275807e-01	k: 355903	n:490000
KS ci ratio: 1.248394e-01	ci left: 1.882772e-03	ci right 2.135419e-03	k: 983	n:490000
PPP1CB   490000 perm   169 sec   (2891 perm/sec)   p_kst 2.006122e-03   p_cons 7.263327e-01   p_joint 2.006122e-03

Joint ci ratio: 1.238371e-01	ci left: 1.876121e-03	ci right 2.125706e-03	k: 999	n:500000
Cons ci ratio: 3.403245e-03	ci left: 7.250498e-01	ci right 7.275235e-01	k: 363144	n:500000
KS ci ratio: 1.238371e-01	ci left: 1.876121e-03	ci right 2.125706e-03	k: 999	n:500000
PPP1CB   500000 perm   175 sec   (2859 perm/sec)   p_kst 1.998000e-03   p_cons 7.262880e-01   p_joint 1.998000e-03

Joint ci ratio: 1.229193e-01	ci left: 1.867837e-03	ci right 2.114346e-03	k: 1014	n:510000
Cons ci ratio: 3.370378e-03	ci left: 7.249838e-01	ci right 7.274333e-01	k: 370367	n:510000
KS ci ratio: 1.229193e-01	ci left: 1.867837e-03	ci right 2.114346e-03	k: 1014	n:510000
PPP1CB   510000 perm   180 sec   (2830 perm/sec)   p_kst 1.988235e-03   p_cons 7.262098e-01   p_joint 1.988235e-03

Joint ci ratio: 1.217848e-01	ci left: 1.867338e-03	ci right 2.111341e-03	k: 1033	n:520000
Cons ci ratio: 3.338831e-03	ci left: 7.248741e-01	ci right 7.273003e-01	k: 377566	n:520000
KS ci ratio: 1.217848e-01	ci left: 1.867338e-03	ci right 2.111341e-03	k: 1033	n:520000
PPP1CB   520000 perm   186 sec   (2800 perm/sec)   p_kst 1.986538e-03   p_cons 7.260885e-01   p_joint 1.986538e-03

Joint ci ratio: 1.205093e-01	ci left: 1.872357e-03	ci right 2.114271e-03	k: 1055	n:530000
Cons ci ratio: 3.308421e-03	ci left: 7.247366e-01	ci right 7.271402e-01	k: 384748	n:530000
KS ci ratio: 1.205093e-01	ci left: 1.872357e-03	ci right 2.114271e-03	k: 1055	n:530000
PPP1CB   530000 perm   191 sec   (2772 perm/sec)   p_kst 1.990566e-03   p_cons 7.259396e-01   p_joint 1.990566e-03

Joint ci ratio: 1.191071e-01	ci left: 1.882593e-03	ci right 2.122800e-03	k: 1080	n:540000
Cons ci ratio: 3.277436e-03	ci left: 7.247730e-01	ci right 7.271542e-01	k: 392021	n:540000
KS ci ratio: 1.191071e-01	ci left: 1.882593e-03	ci right 2.122800e-03	k: 1080	n:540000
PPP1CB   540000 perm   197 sec   (2745 perm/sec)   p_kst 2.000000e-03   p_cons 7.259648e-01   p_joint 2.000000e-03

Joint ci ratio: 1.183981e-01	ci left: 1.871298e-03	ci right 2.108543e-03	k: 1093	n:550000
Cons ci ratio: 3.247336e-03	ci left: 7.248046e-01	ci right 7.271639e-01	k: 399292	n:550000
KS ci ratio: 1.183981e-01	ci left: 1.871298e-03	ci right 2.108543e-03	k: 1093	n:550000
PPP1CB   550000 perm   202 sec   (2717 perm/sec)   p_kst 1.987273e-03   p_cons 7.259855e-01   p_joint 1.987273e-03

Joint ci ratio: 1.169628e-01	ci left: 1.884677e-03	ci right 2.120522e-03	k: 1120	n:560000
Cons ci ratio: 3.218325e-03	ci left: 7.248012e-01	ci right 7.271393e-01	k: 406544	n:560000
KS ci ratio: 1.169628e-01	ci left: 1.884677e-03	ci right 2.120522e-03	k: 1120	n:560000
PPP1CB   560000 perm   208 sec   (2691 perm/sec)   p_kst 2.000000e-03   p_cons 7.259714e-01   p_joint 2.000000e-03

Joint ci ratio: 1.158823e-01	ci left: 1.887382e-03	ci right 2.121235e-03	k: 1141	n:570000
Cons ci ratio: 3.189529e-03	ci left: 7.248665e-01	ci right 7.271839e-01	k: 413835	n:570000
KS ci ratio: 1.158823e-01	ci left: 1.887382e-03	ci right 2.121235e-03	k: 1141	n:570000
PPP1CB   570000 perm   214 sec   (2665 perm/sec)   p_kst 2.001754e-03   p_cons 7.260263e-01   p_joint 2.001754e-03

Joint ci ratio: 1.146831e-01	ci left: 1.895028e-03	ci right 2.127233e-03	k: 1165	n:580000
Cons ci ratio: 3.162890e-03	ci left: 7.247535e-01	ci right 7.270511e-01	k: 421024	n:580000
KS ci ratio: 1.146831e-01	ci left: 1.895028e-03	ci right 2.127233e-03	k: 1165	n:580000
PPP1CB   580000 perm   220 sec   (2640 perm/sec)   p_kst 2.008621e-03   p_cons 7.259034e-01   p_joint 2.008621e-03

Joint ci ratio: 1.140983e-01	ci left: 1.882665e-03	ci right 2.112100e-03	k: 1177	n:590000
Cons ci ratio: 3.136253e-03	ci left: 7.247276e-01	ci right 7.270058e-01	k: 428262	n:590000
KS ci ratio: 1.140983e-01	ci left: 1.882665e-03	ci right 2.112100e-03	k: 1177	n:590000
PPP1CB   590000 perm   226 sec   (2615 perm/sec)   p_kst 1.994915e-03   p_cons 7.258678e-01   p_joint 1.994915e-03

Joint ci ratio: 1.135701e-01	ci left: 1.869098e-03	ci right 2.095754e-03	k: 1188	n:600000
Cons ci ratio: 3.110342e-03	ci left: 7.246943e-01	ci right 7.269535e-01	k: 435495	n:600000
KS ci ratio: 1.135701e-01	ci left: 1.869098e-03	ci right 2.095754e-03	k: 1188	n:600000
PPP1CB   600000 perm   232 sec   (2589 perm/sec)   p_kst 1.980000e-03   p_cons 7.258250e-01   p_joint 1.980000e-03

Joint ci ratio: 1.128609e-01	ci left: 1.862350e-03	ci right 2.086684e-03	k: 1203	n:610000
Cons ci ratio: 3.084288e-03	ci left: 7.247623e-01	ci right 7.270027e-01	k: 442789	n:610000
KS ci ratio: 1.128609e-01	ci left: 1.862350e-03	ci right 2.086684e-03	k: 1203	n:610000
PPP1CB   610000 perm   238 sec   (2566 perm/sec)   p_kst 1.972131e-03   p_cons 7.258836e-01   p_joint 1.972131e-03

Joint ci ratio: 1.123033e-01	ci left: 1.851121e-03	ci right 2.072928e-03	k: 1215	n:620000
Cons ci ratio: 3.060055e-03	ci left: 7.246748e-01	ci right 7.268973e-01	k: 449988	n:620000
KS ci ratio: 1.123033e-01	ci left: 1.851121e-03	ci right 2.072928e-03	k: 1215	n:620000
PPP1CB   620000 perm   244 sec   (2539 perm/sec)   p_kst 1.959677e-03   p_cons 7.257871e-01   p_joint 1.959677e-03

Joint ci ratio: 1.114814e-01	ci left: 1.849510e-03	ci right 2.069396e-03	k: 1233	n:630000
Cons ci ratio: 3.035864e-03	ci left: 7.246584e-01	ci right 7.268633e-01	k: 457230	n:630000
KS ci ratio: 1.114814e-01	ci left: 1.849510e-03	ci right 2.069396e-03	k: 1233	n:630000
PPP1CB   630000 perm   251 sec   (2514 perm/sec)   p_kst 1.957143e-03   p_cons 7.257619e-01   p_joint 1.957143e-03

Joint ci ratio: 1.103246e-01	ci left: 1.860110e-03	ci right 2.078812e-03	k: 1259	n:640000
Cons ci ratio: 3.012262e-03	ci left: 7.246395e-01	ci right 7.268272e-01	k: 464470	n:640000
KS ci ratio: 1.103246e-01	ci left: 1.860110e-03	ci right 2.078812e-03	k: 1259	n:640000
PPP1CB   640000 perm   257 sec   (2490 perm/sec)   p_kst 1.967188e-03   p_cons 7.257344e-01   p_joint 1.967188e-03

Joint ci ratio: 1.096742e-01	ci left: 1.853935e-03	ci right 2.070542e-03	k: 1274	n:650000
Cons ci ratio: 2.989617e-03	ci left: 7.245658e-01	ci right 7.267368e-01	k: 471674	n:650000
KS ci ratio: 1.096742e-01	ci left: 1.853935e-03	ci right 2.070542e-03	k: 1274	n:650000
PPP1CB   650000 perm   263 sec   (2468 perm/sec)   p_kst 1.960000e-03   p_cons 7.256523e-01   p_joint 1.960000e-03

Joint ci ratio: 1.088660e-01	ci left: 1.853846e-03	ci right 2.068745e-03	k: 1293	n:660000
Cons ci ratio: 2.966763e-03	ci left: 7.245900e-01	ci right 7.267444e-01	k: 478941	n:660000
KS ci ratio: 1.088660e-01	ci left: 1.853846e-03	ci right 2.068745e-03	k: 1293	n:660000
PPP1CB   660000 perm   270 sec   (2447 perm/sec)   p_kst 1.959091e-03   p_cons 7.256682e-01   p_joint 1.959091e-03

Joint ci ratio: 1.077471e-01	ci left: 1.865384e-03	ci right 2.079257e-03	k: 1320	n:670000
Cons ci ratio: 2.944581e-03	ci left: 7.245926e-01	ci right 7.267308e-01	k: 486194	n:670000
KS ci ratio: 1.077471e-01	ci left: 1.865384e-03	ci right 2.079257e-03	k: 1320	n:670000
PPP1CB   670000 perm   276 sec   (2424 perm/sec)   p_kst 1.970149e-03   p_cons 7.256627e-01   p_joint 1.970149e-03

Joint ci ratio: 1.071008e-01	ci left: 1.860849e-03	ci right 2.072841e-03	k: 1336	n:680000
Cons ci ratio: 2.922899e-03	ci left: 7.245937e-01	ci right 7.267161e-01	k: 493446	n:680000
KS ci ratio: 1.071008e-01	ci left: 1.860849e-03	ci right 2.072841e-03	k: 1336	n:680000
PPP1CB   680000 perm   283 sec   (2402 perm/sec)   p_kst 1.964706e-03   p_cons 7.256559e-01   p_joint 1.964706e-03

Joint ci ratio: 1.065449e-01	ci left: 1.853628e-03	ci right 2.063632e-03	k: 1350	n:690000
Cons ci ratio: 2.901869e-03	ci left: 7.245702e-01	ci right 7.266772e-01	k: 500681	n:690000
KS ci ratio: 1.065449e-01	ci left: 1.853628e-03	ci right 2.063632e-03	k: 1350	n:690000
PPP1CB   690000 perm   290 sec   (2381 perm/sec)   p_kst 1.956522e-03   p_cons 7.256246e-01   p_joint 1.956522e-03

Joint ci ratio: 1.058810e-01	ci left: 1.850788e-03	ci right 2.059083e-03	k: 1367	n:700000
Cons ci ratio: 2.880987e-03	ci left: 7.245888e-01	ci right 7.266807e-01	k: 507945	n:700000
KS ci ratio: 1.058810e-01	ci left: 1.850788e-03	ci right 2.059083e-03	k: 1367	n:700000
PPP1CB   700000 perm   296 sec   (2361 perm/sec)   p_kst 1.952857e-03   p_cons 7.256357e-01   p_joint 1.952857e-03

Joint ci ratio: 1.053056e-01	ci left: 1.845289e-03	ci right 2.051766e-03	k: 1382	n:710000
Cons ci ratio: 2.860225e-03	ci left: 7.246521e-01	ci right 7.267291e-01	k: 515241	n:710000
KS ci ratio: 1.053056e-01	ci left: 1.845289e-03	ci right 2.051766e-03	k: 1382	n:710000
PPP1CB   710000 perm   303 sec   (2340 perm/sec)   p_kst 1.946479e-03   p_cons 7.256915e-01   p_joint 1.946479e-03

Joint ci ratio: 1.044404e-01	ci left: 1.850767e-03	ci right 2.056051e-03	k: 1405	n:720000
Cons ci ratio: 2.840609e-03	ci left: 7.246150e-01	ci right 7.266776e-01	k: 522466	n:720000
KS ci ratio: 1.044404e-01	ci left: 1.850767e-03	ci right 2.056051e-03	k: 1405	n:720000
PPP1CB   720000 perm   311 sec   (2318 perm/sec)   p_kst 1.951389e-03   p_cons 7.256472e-01   p_joint 1.951389e-03

Joint ci ratio: 1.035600e-01	ci left: 1.857435e-03	ci right 2.061618e-03	k: 1429	n:730000
Cons ci ratio: 2.821324e-03	ci left: 7.245885e-01	ci right 7.266371e-01	k: 529698	n:730000
KS ci ratio: 1.035600e-01	ci left: 1.857435e-03	ci right 2.061618e-03	k: 1429	n:730000
PPP1CB   730000 perm   318 sec   (2296 perm/sec)   p_kst 1.957534e-03   p_cons 7.256137e-01   p_joint 1.957534e-03

Joint ci ratio: 1.025602e-01	ci left: 1.869198e-03	ci right 2.072570e-03	k: 1457	n:740000
Cons ci ratio: 2.802226e-03	ci left: 7.245913e-01	ci right 7.266259e-01	k: 536951	n:740000
KS ci ratio: 1.025602e-01	ci left: 1.869198e-03	ci right 2.072570e-03	k: 1457	n:740000
PPP1CB   740000 perm   325 sec   (2276 perm/sec)   p_kst 1.968919e-03   p_cons 7.256095e-01   p_joint 1.968919e-03

Joint ci ratio: 1.017949e-01	ci left: 1.872859e-03	ci right 2.075018e-03	k: 1479	n:750000
Cons ci ratio: 2.783846e-03	ci left: 7.245459e-01	ci right 7.265670e-01	k: 544168	n:750000
KS ci ratio: 1.017949e-01	ci left: 1.872859e-03	ci right 2.075018e-03	k: 1479	n:750000
PPP1CB   750000 perm   333 sec   (2256 perm/sec)   p_kst 1.972000e-03   p_cons 7.255573e-01   p_joint 1.972000e-03

Joint ci ratio: 1.008449e-01	ci left: 1.884126e-03	ci right 2.085490e-03	k: 1507	n:760000
Cons ci ratio: 2.766508e-03	ci left: 7.244030e-01	ci right 7.264111e-01	k: 551310	n:760000
KS ci ratio: 1.008449e-01	ci left: 1.884126e-03	ci right 2.085490e-03	k: 1507	n:760000
PPP1CB   760000 perm   340 sec   (2237 perm/sec)   p_kst 1.982895e-03   p_cons 7.254079e-01   p_joint 1.982895e-03

Joint ci ratio: 1.000843e-01	ci left: 1.888776e-03	ci right 2.089026e-03	k: 1530	n:770000
Cons ci ratio: 2.748764e-03	ci left: 7.243691e-01	ci right 7.263642e-01	k: 558533	n:770000
KS ci ratio: 1.000843e-01	ci left: 1.888776e-03	ci right 2.089026e-03	k: 1530	n:770000
PPP1CB   770000 perm   347 sec   (2219 perm/sec)   p_kst 1.987013e-03   p_cons 7.253675e-01   p_joint 1.987013e-03

Joint ci ratio: 9.950122e-02	ci left: 1.887062e-03	ci right 2.085896e-03	k: 1548	n:780000
Cons ci ratio: 2.731128e-03	ci left: 7.243696e-01	ci right 7.263519e-01	k: 565782	n:780000
KS ci ratio: 9.950122e-02	ci left: 1.887062e-03	ci right 2.085896e-03	k: 1548	n:780000
PPP1CB   780000 perm   354 sec   (2200 perm/sec)   p_kst 1.984615e-03   p_cons 7.253615e-01   p_joint 1.984615e-03

Outputting figure to mutsig2_images.part000000000136/PPP1CB.2_1016_780000_0.0019846_0.72536_0.0019846.png
                gene_name: PPP1CB
               theta_stop: 0.100 
                    nperm: 780000 
                     p_ks: 0.0020 
        ci_ks_bounds_left: 0.0019 
       ci_ks_bounds_right: 0.0021 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.0020 
     ci_joint_bounds_left: 0.0019 
    ci_joint_bounds_right: 0.0021 

Current progress: 76 percent done.
PPP1CC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.737222e-02	ci left: 6.629006e-01	ci right 6.813991e-01	k: 6722	n:10000
Cons ci ratio: 1.156431e-02	ci left: 9.145095e-01	ci right 9.252444e-01	k: 9200	n:10000
KS ci ratio: 4.158686e-02	ci left: 4.605772e-01	ci right 4.802401e-01	k: 4704	n:10000
PPP1CC   10000 perm   1 sec   (7805 perm/sec)   p_kst 4.704000e-01   p_cons 9.200000e-01   p_joint 6.722000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1CC.2_1000_10000_0.4704_0.92_0.6722.png
                gene_name: PPP1CC
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 78 percent done.
PPP1R14D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.330863e-02	ci left: 8.905689e-01	ci right 9.025990e-01	k: 8967	n:10000
Cons ci ratio: 3.043901e-02	ci left: 6.142204e-01	ci right 6.333075e-01	k: 6238	n:10000
KS ci ratio: 4.716131e-02	ci left: 3.988435e-01	ci right 4.182098e-01	k: 4085	n:10000
PPP1R14D   10000 perm   1 sec   (7753 perm/sec)   p_kst 4.085000e-01   p_cons 6.238000e-01   p_joint 8.967000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R14D.2_623_10000_0.4085_0.6238_0.8967.png
                gene_name: PPP1R14D
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 80 percent done.
PPP1R15B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.174575e-02	ci left: 4.586800e-01	ci right 4.783383e-01	k: 4685	n:10000
Cons ci ratio: 4.157017e-02	ci left: 4.607769e-01	ci right 4.804402e-01	k: 4706	n:10000
KS ci ratio: 3.359399e-02	ci left: 5.667444e-01	ci right 5.862110e-01	k: 5765	n:10000
PPP1R15B   10000 perm   1 sec   (7161 perm/sec)   p_kst 5.765000e-01   p_cons 4.706000e-01   p_joint 4.685000e-01

Outputting figure to mutsig2_images.part000000000136/PPP1R15B.2_2150_10000_0.5765_0.4706_0.4685.png
                gene_name: PPP1R15B
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 81 percent done.
PPP1R1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.103856e-02	ci left: 6.049788e-01	ci right 6.241544e-01	k: 6146	n:10000
KS ci ratio: 2.161767e-02	ci left: 7.583849e-01	ci right 7.750594e-01	k: 7668	n:10000
PPP1R1C   10000 perm   1 sec   (8005 perm/sec)   p_kst 7.668000e-01   p_cons 6.146000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPP1R1C.2_350_10000_0.7668_0.6146_1.png
                gene_name: PPP1R1C
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
PPP1R7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.386300e-02	ci left: 5.628341e-01	ci right 5.823236e-01	k: 5726	n:10000
KS ci ratio: 3.329911e-02	ci left: 5.710566e-01	ci right 5.904963e-01	k: 5808	n:10000
PPP1R7   10000 perm   1 sec   (7727 perm/sec)   p_kst 5.808000e-01   p_cons 5.726000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPP1R7.2_1123_10000_0.5808_0.5726_1.png
                gene_name: PPP1R7
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
PPP2CB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.670404e-02	ci left: 6.737778e-01	ci right 6.921155e-01	k: 6830	n:10000
KS ci ratio: 3.876542e-02	ci left: 4.956504e-01	ci right 5.153464e-01	k: 5055	n:10000
PPP2CB   10000 perm   1 sec   (7616 perm/sec)   p_kst 5.055000e-01   p_cons 6.830000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPP2CB.2_958_10000_0.5055_0.683_1.png
                gene_name: PPP2CB
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
PPP2R1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.257984e-01	ci left: 8.290659e-02	ci right 9.413446e-02	k: 884	n:10000
Cons ci ratio: 9.035409e-02	ci left: 1.511960e-01	ci right 1.656036e-01	k: 1583	n:10000
KS ci ratio: 2.689486e-01	ci left: 1.799971e-02	ci right 2.368423e-02	k: 207	n:10000
PPP2R1B   10000 perm   1 sec   (6958 perm/sec)   p_kst 2.070000e-02   p_cons 1.583000e-01   p_joint 8.840000e-02

Joint ci ratio: 8.979208e-02	ci left: 8.308030e-02	ci right 9.094026e-02	k: 1739	n:20000
Cons ci ratio: 6.882744e-02	ci left: 1.347259e-01	ci right 1.443791e-01	k: 2790	n:20000
KS ci ratio: 1.978447e-01	ci left: 1.734330e-02	ci right 2.119826e-02	k: 384	n:20000
PPP2R1B   20000 perm   3 sec   (6144 perm/sec)   p_kst 1.920000e-02   p_cons 1.395000e-01   p_joint 8.695000e-02

Joint ci ratio: 3.228228e-02	ci left: 3.241812e-01	ci right 3.348518e-01	k: 9885	n:30000
Cons ci ratio: 5.627191e-02	ci left: 1.353014e-01	ci right 1.431686e-01	k: 4176	n:30000
KS ci ratio: 1.621863e-01	ci left: 1.754916e-02	ci right 2.067829e-02	k: 572	n:30000
PPP2R1B   30000 perm   5 sec   (5813 perm/sec)   p_kst 1.906667e-02   p_cons 1.392000e-01   p_joint 3.295000e-01

Joint ci ratio: 4.022058e-02	ci left: 1.880260e-01	ci right 1.957687e-01	k: 7675	n:40000
Cons ci ratio: 4.820308e-02	ci left: 1.384445e-01	ci right 1.453076e-01	k: 5674	n:40000
KS ci ratio: 1.389816e-01	ci left: 1.814326e-02	ci right 2.087713e-02	k: 779	n:40000
PPP2R1B   40000 perm   7 sec   (5578 perm/sec)   p_kst 1.947500e-02   p_cons 1.418500e-01   p_joint 1.918750e-01

Joint ci ratio: 6.426438e-02	ci left: 6.702990e-02	ci right 7.150027e-02	k: 3462	n:50000
Cons ci ratio: 4.303560e-02	ci left: 1.392486e-01	ci right 1.453930e-01	k: 7115	n:50000
KS ci ratio: 1.261696e-01	ci left: 1.774379e-02	ci right 2.015252e-02	k: 946	n:50000
PPP2R1B   50000 perm   9 sec   (5436 perm/sec)   p_kst 1.892000e-02   p_cons 1.423000e-01   p_joint 6.924000e-02

Joint ci ratio: 5.889082e-02	ci left: 6.673795e-02	ci right 7.080388e-02	k: 4125	n:60000
Cons ci ratio: 3.935372e-02	ci left: 1.391004e-01	ci right 1.447010e-01	k: 8513	n:60000
KS ci ratio: 1.146330e-01	ci left: 1.801975e-02	ci right 2.022711e-02	k: 1146	n:60000
PPP2R1B   60000 perm   11 sec   (5295 perm/sec)   p_kst 1.910000e-02   p_cons 1.418833e-01   p_joint 6.875000e-02

Joint ci ratio: 5.823199e-02	ci left: 5.902677e-02	ci right 6.258117e-02	k: 4255	n:70000
Cons ci ratio: 3.650734e-02	ci left: 1.388266e-01	ci right 1.440032e-01	k: 9898	n:70000
KS ci ratio: 1.054158e-01	ci left: 1.834931e-02	ci right 2.040509e-02	k: 1355	n:70000
PPP2R1B   70000 perm   14 sec   (5172 perm/sec)   p_kst 1.935714e-02   p_cons 1.414000e-01   p_joint 6.078571e-02

Joint ci ratio: 5.102761e-02	ci left: 6.694429e-02	ci right 7.046207e-02	k: 5495	n:80000
Cons ci ratio: 3.407262e-02	ci left: 1.395384e-01	ci right 1.443876e-01	k: 11356	n:80000
KS ci ratio: 9.798754e-02	ci left: 1.865062e-02	ci right 2.058444e-02	k: 1568	n:80000
PPP2R1B   80000 perm   16 sec   (5056 perm/sec)   p_kst 1.960000e-02   p_cons 1.419500e-01   p_joint 6.868750e-02

Outputting figure to mutsig2_images.part000000000136/PPP2R1B.2_2089_80000_0.0196_0.14195_0.068687.png
                gene_name: PPP2R1B
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.070 

Current progress: 89 percent done.
PPP2R2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.446282e-02	ci left: 1.399172e-01	ci right 1.538892e-01	k: 1468	n:10000
Cons ci ratio: 2.887085e-01	ci left: 1.548531e-02	ci right 2.080068e-02	k: 180	n:10000
KS ci ratio: 3.016084e-02	ci left: 6.185410e-01	ci right 6.375843e-01	k: 6281	n:10000
PPP2R2D   10000 perm   1 sec   (7391 perm/sec)   p_kst 6.281000e-01   p_cons 1.800000e-02   p_joint 1.468000e-01

Joint ci ratio: 1.986352e-01	ci left: 1.720062e-02	ci right 2.104099e-02	k: 381	n:20000
Cons ci ratio: 1.986352e-01	ci left: 1.720062e-02	ci right 2.104099e-02	k: 381	n:20000
KS ci ratio: 2.124586e-02	ci left: 6.231649e-01	ci right 6.365973e-01	k: 12598	n:20000
PPP2R2D   20000 perm   3 sec   (6538 perm/sec)   p_kst 6.299000e-01   p_cons 1.905000e-02   p_joint 1.905000e-02

Joint ci ratio: 1.642437e-01	ci left: 1.710123e-02	ci right 2.019299e-02	k: 558	n:30000
Cons ci ratio: 1.642437e-01	ci left: 1.710123e-02	ci right 2.019299e-02	k: 558	n:30000
KS ci ratio: 1.734497e-02	ci left: 6.244742e-01	ci right 6.354340e-01	k: 18899	n:30000
PPP2R2D   30000 perm   5 sec   (6181 perm/sec)   p_kst 6.299667e-01   p_cons 1.860000e-02   p_joint 1.860000e-02

Joint ci ratio: 1.418846e-01	ci left: 1.739501e-02	ci right 2.007550e-02	k: 748	n:40000
Cons ci ratio: 1.418846e-01	ci left: 1.739501e-02	ci right 2.007550e-02	k: 748	n:40000
KS ci ratio: 1.499849e-02	ci left: 6.259235e-01	ci right 6.354075e-01	k: 25227	n:40000
PPP2R2D   40000 perm   7 sec   (5988 perm/sec)   p_kst 6.306750e-01   p_cons 1.870000e-02   p_joint 1.870000e-02

Joint ci ratio: 1.270614e-01	ci left: 1.749189e-02	ci right 1.988446e-02	k: 933	n:50000
Cons ci ratio: 1.270614e-01	ci left: 1.749189e-02	ci right 1.988446e-02	k: 933	n:50000
KS ci ratio: 1.343744e-02	ci left: 6.256504e-01	ci right 6.341345e-01	k: 31495	n:50000
PPP2R2D   50000 perm   9 sec   (5826 perm/sec)   p_kst 6.299000e-01   p_cons 1.866000e-02   p_joint 1.866000e-02

Joint ci ratio: 1.153009e-01	ci left: 1.780921e-02	ci right 2.000434e-02	k: 1133	n:60000
Cons ci ratio: 1.153009e-01	ci left: 1.780921e-02	ci right 2.000434e-02	k: 1133	n:60000
KS ci ratio: 1.224740e-02	ci left: 6.267570e-01	ci right 6.344971e-01	k: 37838	n:60000
PPP2R2D   60000 perm   11 sec   (5681 perm/sec)   p_kst 6.306333e-01   p_cons 1.888333e-02   p_joint 1.888333e-02

Joint ci ratio: 1.063391e-01	ci left: 1.802929e-02	ci right 2.006800e-02	k: 1332	n:70000
Cons ci ratio: 1.063391e-01	ci left: 1.802929e-02	ci right 2.006800e-02	k: 1332	n:70000
KS ci ratio: 1.134390e-02	ci left: 6.268403e-01	ci right 6.340060e-01	k: 44130	n:70000
PPP2R2D   70000 perm   13 sec   (5547 perm/sec)   p_kst 6.304286e-01   p_cons 1.902857e-02   p_joint 1.902857e-02

Joint ci ratio: 9.925321e-02	ci left: 1.817493e-02	ci right 2.008517e-02	k: 1529	n:80000
Cons ci ratio: 9.925321e-02	ci left: 1.817493e-02	ci right 2.008517e-02	k: 1529	n:80000
KS ci ratio: 1.059627e-02	ci left: 6.277330e-01	ci right 6.344325e-01	k: 50487	n:80000
PPP2R2D   80000 perm   15 sec   (5405 perm/sec)   p_kst 6.310875e-01   p_cons 1.911250e-02   p_joint 1.911250e-02

Outputting figure to mutsig2_images.part000000000136/PPP2R2D.2_1292_80000_0.63109_0.019113_0.019113.png
                gene_name: PPP2R2D
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 91 percent done.
PPP2R5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.687064e-02	ci left: 6.710580e-01	ci right 6.894369e-01	k: 6803	n:10000
Cons ci ratio: 2.811442e-02	ci left: 6.509218e-01	ci right 6.695847e-01	k: 6603	n:10000
KS ci ratio: 5.982159e-02	ci left: 2.913250e-01	ci right 3.093915e-01	k: 3003	n:10000
PPP2R5A   10000 perm   1 sec   (7177 perm/sec)   p_kst 3.003000e-01   p_cons 6.603000e-01   p_joint 6.803000e-01

Outputting figure to mutsig2_images.part000000000136/PPP2R5A.2_1513_10000_0.3003_0.6603_0.6803.png
                gene_name: PPP2R5A
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 93 percent done.
PPP2R5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.773937e-02	ci left: 6.569607e-01	ci right 6.755424e-01	k: 6663	n:10000
KS ci ratio: 8.318649e-02	ci left: 1.740876e-01	ci right 1.892983e-01	k: 1816	n:10000
PPP2R5B   10000 perm   1 sec   (6986 perm/sec)   p_kst 1.816000e-01   p_cons 6.663000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPP2R5B.2_1546_10000_0.1816_0.6663_1.png
                gene_name: PPP2R5B
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
PPP2R5E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.501285e-02	ci left: 2.063903e-01	ci right 2.225764e-01	k: 2144	n:10000
KS ci ratio: 1.917116e-02	ci left: 7.991260e-01	ci right 8.146948e-01	k: 8070	n:10000
PPP2R5E   10000 perm   1 sec   (7370 perm/sec)   p_kst 8.070000e-01   p_cons 2.144000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000136/PPP2R5E.2_1456_10000_0.807_0.2144_1.png
                gene_name: PPP2R5E
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
PPPDE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.214176e-02	ci left: 4.539876e-01	ci right 4.736335e-01	k: 4638	n:10000
Cons ci ratio: 5.508155e-02	ci left: 3.268405e-01	ci right 3.454551e-01	k: 3361	n:10000
KS ci ratio: 9.943597e-02	ci left: 1.277721e-01	ci right 1.412416e-01	k: 1344	n:10000
PPPDE1   10000 perm   1 sec   (7832 perm/sec)   p_kst 1.344000e-01   p_cons 3.361000e-01   p_joint 4.638000e-01

Outputting figure to mutsig2_images.part000000000136/PPPDE1.2_605_10000_0.1344_0.3361_0.4638.png
                gene_name: PPPDE1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 98 percent done.
PPT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.579547e-02	ci left: 6.886930e-01	ci right 7.067917e-01	k: 6978	n:10000
Cons ci ratio: 1.534925e-02	ci left: 8.602896e-01	ci right 8.736958e-01	k: 8671	n:10000
KS ci ratio: 4.195586e-02	ci left: 4.561840e-01	ci right 4.758358e-01	k: 4660	n:10000
PPT2   10000 perm   1 sec   (7574 perm/sec)   p_kst 4.660000e-01   p_cons 8.671000e-01   p_joint 6.978000e-01

Outputting figure to mutsig2_images.part000000000136/PPT2.2_963_10000_0.466_0.8671_0.6978.png
                gene_name: PPT2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000136
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 136 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1713>
Subject: Job 9894091: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1713>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000137> was used as the working directory.
Started at Sat Oct  6 00:25:30 2012
Results reported at Sat Oct  6 00:34:33 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000137.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000137.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 137  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000137.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    565.71 sec.
    Max Memory :      3574 MB
    Max Swap   :      5906 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
137
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 137
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 137: processing genes 12261 - 12351
Calculating significance of each gene.
Using projection method.
12261	PQLC3	6.451360e-01
12262	PRAC	1
12263	PRAF2	5.635978e-01
12264	PRAM1	4.359692e-01
12265	PRAME	2.557123e-01
12266	PRAMEF1	1.450769e-01
12267	PRAMEF10	6.475472e-01
12268	PRAMEF12	7.682948e-01
12269	PRAMEF13	4.341387e-01
12270	PRAMEF14	8.363127e-01
12271	PRAMEF17	1
12272	PRAMEF18	1
12273	PRAMEF19	1
12274	PRAMEF2	1
12275	PRAMEF4	1.351031e-01
12276	PRAP1	3.180594e-01
12277	PRB1	5.440762e-01
12278	PRB2	8.357501e-01
12279	PRB3	6.177469e-01
12280	PRB4	3.721420e-02
12281	PRC1	6.442782e-01
12282	PRCC	1
12283	PRCD	1
12284	PRCP	6.000041e-01
12285	PRDM1	6.536481e-01
12286	PRDM10	3.510822e-01
12287	PRDM11	5.251634e-01
12288	PRDM12	5.664687e-01
12289	PRDM13	8.974041e-01
12290	PRDM14	2.749863e-01
12291	PRDM15	6.204302e-01
12292	PRDM16	9.810475e-01
In gene PRDM2 the following bins exceed PROBCAP:
    COAD-AA-A00K	categ 6	N = 5259    n = 1	mu =   5.86e-07
12293	PRDM2	4.736227e-03
12294	PRDM4	5.442684e-01
12295	PRDM5	2.818430e-01
12296	PRDM7	5.876253e-01
12297	PRDM8	8.950679e-01
12298	PRDM9	8.701421e-07
12299	PRDX1	5.511098e-01
12300	PRDX2	1
12301	PRDX3	1
12302	PRDX4	1
12303	PRDX5	1
12304	PRDX6	2.797419e-01
12305	PREB	6.298659e-01
12306	PRELID1	1
12307	PRELID2	5.647110e-01
12308	PRELP	3.372045e-01
12309	PREP	3.283906e-01
12310	PREPL	9.603311e-01
12311	PREX1	1.574270e-01
12312	PREX2	2.576267e-02
12313	PRF1	1
12314	PRG2	6.377809e-03
12315	PRG3	6.600770e-01
12316	PRG4	3.412129e-01
12317	PRH1	1
12318	PRH2	3.974847e-01
12319	PRHOXNB	1.617890e-01
12320	PRIC285	1
12321	PRICKLE1	1.221730e-01
12322	PRICKLE2	3.974095e-01
12323	PRICKLE3	5.238793e-01
12324	PRICKLE4	9.362303e-01
12325	PRIM1	1
12326	PRIM2	2.910690e-04
12327	PRIMA1	1.560638e-01
12328	PRKAA1	5.405098e-01
12329	PRKAA2	5.544373e-03
12330	PRKAB1	3.748230e-01
12331	PRKAB2	7.875210e-01
12332	PRKACA	7.829771e-01
12333	PRKACB	7.894398e-01
12334	PRKACG	6.244929e-01
12335	PRKAG1	4.804109e-01
12336	PRKAG2	7.795327e-01
12337	PRKAG3	1.769259e-01
12338	PRKAR1A	2.354922e-01
12339	PRKAR1B	6.005026e-01
12340	PRKAR2A	1
12341	PRKAR2B	2.680634e-01
12342	PRKCA	4.182746e-01
12343	PRKCB	8.928469e-02
12344	PRKCD	7.403878e-01
12345	PRKCDBP	3.801872e-01
12346	PRKCE	1.818889e-01
12347	PRKCG	2.426592e-02
12348	PRKCH	7.551134e-01
12349	PRKCI	4.302705e-01
12350	PRKCQ	3.173183e-01
12351	PRKCSH	9.111135e-01
Done

Running MutSig 2:
Scatter job 137: processing genes 12261 - 12351
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PRDM9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.312049e-02	ci left: 7.332037e-01	ci right 7.504552e-01	k: 7419	n:10000
Cons ci ratio: 1.098128e-02	ci left: 9.220356e-01	ci right 9.323139e-01	k: 9273	n:10000
KS ci ratio: 4.410837e-02	ci left: 4.314365e-01	ci right 4.509978e-01	k: 4412	n:10000
PRDM9   10000 perm   2 sec   (4538 perm/sec)   p_kst 4.412000e-01   p_cons 9.273000e-01   p_joint 7.419000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM9.19_2725_10000_0.4412_0.9273_0.7419.png
                gene_name: PRDM9
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 2 percent done.
PREX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.052060e-01	ci left: 1.154507e-01	ci right 1.283705e-01	k: 1218	n:10000
Cons ci ratio: 1.358092e-01	ci left: 7.165494e-02	ci right 8.219310e-02	k: 768	n:10000
KS ci ratio: 8.167954e-02	ci left: 1.794983e-01	ci right 1.948844e-01	k: 1871	n:10000
PREX1   10000 perm   2 sec   (4379 perm/sec)   p_kst 1.871000e-01   p_cons 7.680000e-02   p_joint 1.218000e-01

Joint ci ratio: 9.117641e-02	ci left: 8.072986e-02	ci right 8.849141e-02	k: 1691	n:20000
Cons ci ratio: 9.741266e-02	ci left: 7.124000e-02	ci right 7.858416e-02	k: 1497	n:20000
KS ci ratio: 5.775694e-02	ci left: 1.817653e-01	ci right 1.926258e-01	k: 3743	n:20000
PREX1   20000 perm   5 sec   (4002 perm/sec)   p_kst 1.871500e-01   p_cons 7.485000e-02   p_joint 8.455000e-02

Outputting figure to mutsig2_images.part000000000137/PREX1.16_5140_20000_0.18715_0.07485_0.08455.png
                gene_name: PREX1
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.088 

Current progress: 4 percent done.
PRDM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.460214e-02	ci left: 7.084626e-01	ci right 7.262107e-01	k: 7174	n:10000
KS ci ratio: 2.288515e-02	ci left: 7.371453e-01	ci right 7.543113e-01	k: 7458	n:10000
PRDM2   10000 perm   3 sec   (3878 perm/sec)   p_kst 7.458000e-01   p_cons 7.174000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRDM2.15_5259_10000_0.7458_0.7174_1.png
                gene_name: PRDM2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
PREX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.381978e-02	ci left: 8.831915e-01	ci right 8.955806e-01	k: 8895	n:10000
Cons ci ratio: 3.096655e-02	ci left: 6.060836e-01	ci right 6.252490e-01	k: 6157	n:10000
KS ci ratio: 1.660467e-02	ci left: 8.407102e-01	ci right 8.548865e-01	k: 8479	n:10000
PREX2   10000 perm   3 sec   (3625 perm/sec)   p_kst 8.479000e-01   p_cons 6.157000e-01   p_joint 8.895000e-01

Outputting figure to mutsig2_images.part000000000137/PREX2.14_5210_10000_0.8479_0.6157_0.8895.png
                gene_name: PREX2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 8 percent done.
PRICKLE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.633558e-02	ci left: 5.279684e-01	ci right 5.476096e-01	k: 5378	n:10000
Cons ci ratio: 7.200770e-02	ci left: 2.203008e-01	ci right 2.368576e-01	k: 2285	n:10000
KS ci ratio: 3.377316e-02	ci left: 5.641375e-01	ci right 5.836195e-01	k: 5739	n:10000
PRICKLE1   10000 perm   2 sec   (5064 perm/sec)   p_kst 5.739000e-01   p_cons 2.285000e-01   p_joint 5.378000e-01

Outputting figure to mutsig2_images.part000000000137/PRICKLE1.11_2524_10000_0.5739_0.2285_0.5378.png
                gene_name: PRICKLE1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 10 percent done.
PRDM10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.829633e-02	ci left: 6.480036e-01	ci right 6.667046e-01	k: 6574	n:10000
KS ci ratio: 1.327272e-02	ci left: 8.910815e-01	ci right 9.030861e-01	k: 8972	n:10000
PRDM10   10000 perm   2 sec   (4672 perm/sec)   p_kst 8.972000e-01   p_cons 6.574000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRDM10.10_3603_10000_0.8972_0.6574_1.png
                gene_name: PRDM10
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
PRKCG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.336195e-02	ci left: 7.291621e-01	ci right 7.464992e-01	k: 7379	n:10000
Cons ci ratio: 5.977892e-02	ci left: 2.916223e-01	ci right 3.096939e-01	k: 3006	n:10000
KS ci ratio: 1.844185e-02	ci left: 8.111081e-01	ci right 8.263058e-01	k: 8188	n:10000
PRKCG   10000 perm   2 sec   (5332 perm/sec)   p_kst 8.188000e-01   p_cons 3.006000e-01   p_joint 7.379000e-01

Outputting figure to mutsig2_images.part000000000137/PRKCG.10_2166_10000_0.8188_0.3006_0.7379.png
                gene_name: PRKCG
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 13 percent done.
PRIM2
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.146253e-01	ci left: 9.866755e-02	ci right 1.107638e-01	k: 1046	n:10000
Cons ci ratio: 3.886633e-02	ci left: 4.943505e-01	ci right 5.140471e-01	k: 5042	n:10000
KS ci ratio: 1.547402e-01	ci left: 5.561671e-02	ci right 6.504144e-02	k: 602	n:10000
PRIM2   10000 perm   2 sec   (5600 perm/sec)   p_kst 6.020000e-02   p_cons 5.042000e-01   p_joint 1.046000e-01

Joint ci ratio: 8.005400e-02	ci left: 1.027483e-01	ci right 1.113663e-01	k: 2140	n:20000
Cons ci ratio: 2.751218e-02	ci left: 4.967456e-01	ci right 5.106534e-01	k: 10074	n:20000
KS ci ratio: 1.086079e-01	ci left: 5.781956e-02	ci right 6.450873e-02	k: 1222	n:20000
PRIM2   20000 perm   4 sec   (5034 perm/sec)   p_kst 6.110000e-02   p_cons 5.037000e-01   p_joint 1.070000e-01

Joint ci ratio: 6.737272e-02	ci left: 9.797344e-02	ci right 1.048373e-01	k: 3041	n:30000
Cons ci ratio: 2.231935e-02	ci left: 5.012588e-01	ci right 5.126065e-01	k: 15208	n:30000
KS ci ratio: 8.830750e-02	ci left: 5.890524e-02	ci right 6.438003e-02	k: 1848	n:30000
PRIM2   30000 perm   6 sec   (4831 perm/sec)   p_kst 6.160000e-02   p_cons 5.069333e-01   p_joint 1.013667e-01

Outputting figure to mutsig2_images.part000000000137/PRIM2.6_1582_30000_0.0616_0.50693_0.10137.png
                gene_name: PRIM2
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.10 

Current progress: 15 percent done.
PRKAA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.755301e-02	ci left: 2.433161e-01	ci right 2.604287e-01	k: 2518	n:10000
Cons ci ratio: 6.665108e-02	ci left: 2.483582e-01	ci right 2.655836e-01	k: 2569	n:10000
KS ci ratio: 8.968229e-02	ci left: 1.531589e-01	ci right 1.676395e-01	k: 1603	n:10000
PRKAA2   10000 perm   2 sec   (5407 perm/sec)   p_kst 1.603000e-01   p_cons 2.569000e-01   p_joint 2.518000e-01

Outputting figure to mutsig2_images.part000000000137/PRKAA2.9_1695_10000_0.1603_0.2569_0.2518.png
                gene_name: PRKAA2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 17 percent done.
PRG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.500293e-02	ci left: 7.018032e-01	ci right 7.196739e-01	k: 7108	n:10000
Cons ci ratio: 1.263811e-02	ci left: 9.000087e-01	ci right 9.115537e-01	k: 9059	n:10000
KS ci ratio: 3.637945e-02	ci left: 5.273677e-01	ci right 5.470106e-01	k: 5372	n:10000
PRG4   10000 perm   2 sec   (4612 perm/sec)   p_kst 5.372000e-01   p_cons 9.059000e-01   p_joint 7.108000e-01

Outputting figure to mutsig2_images.part000000000137/PRG4.7_4263_10000_0.5372_0.9059_0.7108.png
                gene_name: PRG4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 19 percent done.
PRKCB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.506850e-02	ci left: 8.645785e-01	ci right 8.778045e-01	k: 8713	n:10000
KS ci ratio: 1.871463e-02	ci left: 8.066388e-01	ci right 8.219776e-01	k: 8144	n:10000
PRKCB   10000 perm   2 sec   (5761 perm/sec)   p_kst 8.144000e-01   p_cons 8.713000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRKCB.7_2247_10000_0.8144_0.8713_1.png
                gene_name: PRKCB
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
PRDM15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.318688e-02	ci left: 7.320922e-01	ci right 7.493674e-01	k: 7408	n:10000
Cons ci ratio: 9.047443e-03	ci left: 9.450255e-01	ci right 9.537104e-01	k: 9495	n:10000
KS ci ratio: 3.103201e-02	ci left: 6.050792e-01	ci right 6.242539e-01	k: 6147	n:10000
PRDM15   10000 perm   2 sec   (4517 perm/sec)   p_kst 6.147000e-01   p_cons 9.495000e-01   p_joint 7.408000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM15.6_4648_10000_0.6147_0.9495_0.7408.png
                gene_name: PRDM15
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 23 percent done.
PRG2
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.474582e-01	ci left: 6.111415e-02	ci right 7.094050e-02	k: 659	n:10000
Cons ci ratio: 3.237781e-02	ci left: 5.847001e-01	ci right 6.040449e-01	k: 5944	n:10000
KS ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
PRG2   10000 perm   1 sec   (7092 perm/sec)   p_kst 1.160000e-02   p_cons 5.944000e-01   p_joint 6.590000e-02

Joint ci ratio: 1.085607e-01	ci left: 5.786828e-02	ci right 6.455999e-02	k: 1223	n:20000
Cons ci ratio: 2.202056e-02	ci left: 6.062589e-01	ci right 6.198082e-01	k: 12261	n:20000
KS ci ratio: 2.387411e-01	ci left: 1.171137e-02	ci right 1.493242e-02	k: 265	n:20000
PRG2   20000 perm   3 sec   (6267 perm/sec)   p_kst 1.325000e-02   p_cons 6.130500e-01   p_joint 6.115000e-02

Joint ci ratio: 7.750545e-02	ci left: 7.551352e-02	ci right 8.163506e-02	k: 2356	n:30000
Cons ci ratio: 1.798823e-02	ci left: 6.072940e-01	ci right 6.183508e-01	k: 18385	n:30000
KS ci ratio: 1.913204e-01	ci left: 1.247871e-02	ci right 1.515000e-02	k: 413	n:30000
PRG2   30000 perm   5 sec   (5931 perm/sec)   p_kst 1.376667e-02   p_cons 6.128333e-01   p_joint 7.853333e-02

Joint ci ratio: 7.517463e-02	ci left: 6.125227e-02	ci right 6.606132e-02	k: 2545	n:40000
Cons ci ratio: 1.553193e-02	ci left: 6.094591e-01	ci right 6.190243e-01	k: 24570	n:40000
KS ci ratio: 1.666096e-01	ci left: 1.251184e-02	ci right 1.480957e-02	k: 545	n:40000
PRG2   40000 perm   7 sec   (5717 perm/sec)   p_kst 1.362500e-02   p_cons 6.142500e-01   p_joint 6.362500e-02

Joint ci ratio: 7.788465e-02	ci left: 4.633886e-02	ci right 5.011381e-02	k: 2410	n:50000
Cons ci ratio: 1.390838e-02	ci left: 6.094157e-01	ci right 6.179711e-01	k: 30685	n:50000
KS ci ratio: 1.514577e-01	ci left: 1.221796e-02	ci right 1.423914e-02	k: 660	n:50000
PRG2   50000 perm   9 sec   (5547 perm/sec)   p_kst 1.320000e-02   p_cons 6.137000e-01   p_joint 4.820000e-02

Joint ci ratio: 6.918776e-02	ci left: 4.902359e-02	ci right 5.255335e-02	k: 3046	n:60000
Cons ci ratio: 1.270508e-02	ci left: 6.094731e-01	ci right 6.172826e-01	k: 36803	n:60000
KS ci ratio: 1.375776e-01	ci left: 1.243084e-02	ci right 1.428334e-02	k: 800	n:60000
PRG2   60000 perm   11 sec   (5404 perm/sec)   p_kst 1.333333e-02   p_cons 6.133833e-01   p_joint 5.076667e-02

Joint ci ratio: 6.512234e-02	ci left: 4.760933e-02	ci right 5.082816e-02	k: 3444	n:70000
Cons ci ratio: 1.173462e-02	ci left: 6.108969e-01	ci right 6.181222e-01	k: 43016	n:70000
KS ci ratio: 1.268573e-01	ci left: 1.260282e-02	ci right 1.432358e-02	k: 941	n:70000
PRG2   70000 perm   13 sec   (5275 perm/sec)   p_kst 1.344286e-02   p_cons 6.145143e-01   p_joint 4.920000e-02

Joint ci ratio: 6.127859e-02	ci left: 4.716936e-02	ci right 5.016348e-02	k: 3892	n:80000
Cons ci ratio: 1.099359e-02	ci left: 6.104033e-01	ci right 6.171634e-01	k: 49103	n:80000
KS ci ratio: 1.120241e-01	ci left: 1.422984e-02	ci right 1.593059e-02	k: 1205	n:80000
PRG2   80000 perm   16 sec   (5156 perm/sec)   p_kst 1.506250e-02   p_cons 6.137875e-01   p_joint 4.865000e-02

Joint ci ratio: 5.417390e-02	ci left: 5.348645e-02	ci right 5.647564e-02	k: 4947	n:90000
Cons ci ratio: 1.036606e-02	ci left: 6.105432e-01	ci right 6.169162e-01	k: 55236	n:90000
KS ci ratio: 1.079747e-01	ci left: 1.365343e-02	ci right 1.522253e-02	k: 1298	n:90000
PRG2   90000 perm   18 sec   (5044 perm/sec)   p_kst 1.442222e-02   p_cons 6.137333e-01   p_joint 5.496667e-02

Joint ci ratio: 4.699920e-02	ci left: 6.350935e-02	ci right 6.657594e-02	k: 6503	n:100000
Cons ci ratio: 9.818223e-03	ci left: 6.114751e-01	ci right 6.175183e-01	k: 61450	n:100000
KS ci ratio: 1.025903e-01	ci left: 1.365124e-02	ci right 1.513713e-02	k: 1438	n:100000
PRG2   100000 perm   20 sec   (4940 perm/sec)   p_kst 1.438000e-02   p_cons 6.145000e-01   p_joint 6.503000e-02

Joint ci ratio: 4.801675e-02	ci left: 5.575392e-02	ci right 5.850586e-02	k: 6283	n:110000
Cons ci ratio: 9.361138e-03	ci left: 6.116253e-01	ci right 6.173868e-01	k: 67596	n:110000
KS ci ratio: 9.775025e-02	ci left: 1.370426e-02	ci right 1.512151e-02	k: 1584	n:110000
PRG2   110000 perm   23 sec   (4848 perm/sec)   p_kst 1.440000e-02   p_cons 6.145091e-01   p_joint 5.711818e-02

Outputting figure to mutsig2_images.part000000000137/PRG2.3_689_110000_0.0144_0.61451_0.057118.png
                gene_name: PRG2
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.059 

Current progress: 25 percent done.
PRICKLE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.804553e-02	ci left: 6.520288e-01	ci right 6.706771e-01	k: 6614	n:10000
Cons ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
KS ci ratio: 2.823983e-02	ci left: 6.489092e-01	ci right 6.675985e-01	k: 6583	n:10000
PRICKLE2   10000 perm   2 sec   (5413 perm/sec)   p_kst 6.583000e-01   p_cons 2.266000e-01   p_joint 6.614000e-01

Outputting figure to mutsig2_images.part000000000137/PRICKLE2.6_2563_10000_0.6583_0.2266_0.6614.png
                gene_name: PRICKLE2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 27 percent done.
PRKAG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.234563e-02	ci left: 4.515919e-01	ci right 4.712306e-01	k: 4614	n:10000
Cons ci ratio: 7.012086e-02	ci left: 2.296806e-01	ci right 2.464723e-01	k: 2380	n:10000
KS ci ratio: 1.996744e-02	ci left: 7.859382e-01	ci right 8.018902e-01	k: 7940	n:10000
PRKAG3   10000 perm   2 sec   (5763 perm/sec)   p_kst 7.940000e-01   p_cons 2.380000e-01   p_joint 4.614000e-01

Outputting figure to mutsig2_images.part000000000137/PRKAG3.6_1522_10000_0.794_0.238_0.4614.png
                gene_name: PRKAG3
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 29 percent done.
PRKCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.600038e-02	ci left: 4.108988e-01	ci right 4.303474e-01	k: 4206	n:10000
Cons ci ratio: 4.106480e-02	ci left: 4.668688e-01	ci right 4.865448e-01	k: 4767	n:10000
KS ci ratio: 6.061366e-02	ci left: 2.858743e-01	ci right 3.038454e-01	k: 2948	n:10000
PRKCE   10000 perm   2 sec   (5428 perm/sec)   p_kst 2.948000e-01   p_cons 4.767000e-01   p_joint 4.206000e-01

Outputting figure to mutsig2_images.part000000000137/PRKCE.6_2274_10000_0.2948_0.4767_0.4206.png
                gene_name: PRKCE
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 31 percent done.
PRAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.159332e-02	ci left: 3.564494e-01	ci right 3.754288e-01	k: 3659	n:10000
Cons ci ratio: 9.085047e-03	ci left: 9.446095e-01	ci right 9.533266e-01	k: 9491	n:10000
KS ci ratio: 7.365934e-02	ci left: 2.125053e-01	ci right 2.288578e-01	k: 2206	n:10000
PRAM1   10000 perm   2 sec   (5589 perm/sec)   p_kst 2.206000e-01   p_cons 9.491000e-01   p_joint 3.659000e-01

Outputting figure to mutsig2_images.part000000000137/PRAM1.5_2050_10000_0.2206_0.9491_0.3659.png
                gene_name: PRAM1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 33 percent done.
PRDM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.068598e-01	ci left: 1.122272e-01	ci right 1.249959e-01	k: 1185	n:10000
Cons ci ratio: 1.038522e-01	ci left: 1.181869e-01	ci right 1.312326e-01	k: 1246	n:10000
KS ci ratio: 8.304689e-02	ci left: 1.745794e-01	ci right 1.898062e-01	k: 1821	n:10000
PRDM5   10000 perm   2 sec   (5607 perm/sec)   p_kst 1.821000e-01   p_cons 1.246000e-01   p_joint 1.185000e-01

Joint ci ratio: 7.683620e-02	ci left: 1.107082e-01	ci right 1.196041e-01	k: 2302	n:20000
Cons ci ratio: 7.394489e-02	ci left: 1.186258e-01	ci right 1.277841e-01	k: 2463	n:20000
KS ci ratio: 5.788060e-02	ci left: 1.811226e-01	ci right 1.919687e-01	k: 3730	n:20000
PRDM5   20000 perm   4 sec   (5013 perm/sec)   p_kst 1.865000e-01   p_cons 1.231500e-01   p_joint 1.151000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM5.5_1957_20000_0.1865_0.12315_0.1151.png
                gene_name: PRDM5
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 35 percent done.
PREP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.338274e-01	ci left: 1.133070e-02	ci right 1.595903e-02	k: 135	n:10000
Cons ci ratio: 4.250783e-02	ci left: 4.496954e-01	ci right 4.693282e-01	k: 4595	n:10000
KS ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
PREP   10000 perm   2 sec   (5577 perm/sec)   p_kst 9.400000e-03   p_cons 4.595000e-01   p_joint 1.350000e-02

Joint ci ratio: 2.234803e-01	ci left: 1.345565e-02	ci right 1.688741e-02	k: 302	n:20000
Cons ci ratio: 3.064454e-02	ci left: 4.430380e-01	ci right 4.568766e-01	k: 8999	n:20000
KS ci ratio: 2.876468e-01	ci left: 7.877125e-03	ci right 1.056846e-02	k: 183	n:20000
PREP   20000 perm   4 sec   (5028 perm/sec)   p_kst 9.150000e-03   p_cons 4.499500e-01   p_joint 1.510000e-02

Joint ci ratio: 1.782389e-01	ci left: 1.445114e-02	ci right 1.731040e-02	k: 475	n:30000
Cons ci ratio: 2.499914e-02	ci left: 4.447583e-01	ci right 4.560513e-01	k: 13512	n:30000
KS ci ratio: 2.383763e-01	ci left: 7.868329e-03	ci right 1.002838e-02	k: 267	n:30000
PREP   30000 perm   6 sec   (4778 perm/sec)   p_kst 8.900000e-03   p_cons 4.504000e-01   p_joint 1.583333e-02

Joint ci ratio: 1.684968e-01	ci left: 1.222427e-02	ci right 1.449719e-02	k: 533	n:40000
Cons ci ratio: 2.160216e-02	ci left: 4.466144e-01	ci right 4.563927e-01	k: 18060	n:40000
KS ci ratio: 2.074191e-01	ci left: 7.931758e-03	ci right 9.790597e-03	k: 353	n:40000
PREP   40000 perm   9 sec   (4612 perm/sec)   p_kst 8.825000e-03   p_cons 4.515000e-01   p_joint 1.332500e-02

Joint ci ratio: 1.346825e-01	ci left: 1.553690e-02	ci right 1.779972e-02	k: 832	n:50000
Cons ci ratio: 1.848900e-02	ci left: 4.690152e-01	ci right 4.777878e-01	k: 23670	n:50000
KS ci ratio: 1.847859e-01	ci left: 8.095389e-03	ci right 9.762375e-03	k: 445	n:50000
PREP   50000 perm   11 sec   (4494 perm/sec)   p_kst 8.900000e-03   p_cons 4.734000e-01   p_joint 1.664000e-02

Joint ci ratio: 1.273323e-01	ci left: 1.455901e-02	ci right 1.655492e-02	k: 932	n:60000
Cons ci ratio: 1.684941e-02	ci left: 4.702475e-01	ci right 4.782549e-01	k: 28455	n:60000
KS ci ratio: 1.674590e-01	ci left: 8.291769e-03	ci right 9.822951e-03	k: 542	n:60000
PREP   60000 perm   14 sec   (4393 perm/sec)   p_kst 9.033333e-03   p_cons 4.742500e-01   p_joint 1.553333e-02

Joint ci ratio: 1.093019e-01	ci left: 1.705578e-02	ci right 1.904160e-02	k: 1262	n:70000
Cons ci ratio: 1.562486e-02	ci left: 4.697381e-01	ci right 4.771498e-01	k: 33141	n:70000
KS ci ratio: 1.536360e-01	ci left: 8.505988e-03	ci right 9.935138e-03	k: 644	n:70000
PREP   70000 perm   16 sec   (4311 perm/sec)   p_kst 9.200000e-03   p_cons 4.734429e-01   p_joint 1.802857e-02

Joint ci ratio: 1.093395e-01	ci left: 1.494722e-02	ci right 1.668815e-02	k: 1264	n:80000
Cons ci ratio: 1.459139e-02	ci left: 4.708096e-01	ci right 4.777423e-01	k: 37942	n:80000
KS ci ratio: 1.432379e-01	ci left: 8.610279e-03	ci right 9.950670e-03	k: 741	n:80000
PREP   80000 perm   19 sec   (4235 perm/sec)   p_kst 9.262500e-03   p_cons 4.742750e-01   p_joint 1.580000e-02

Joint ci ratio: 1.014377e-01	ci left: 1.549362e-02	ci right 1.715999e-02	k: 1468	n:90000
Cons ci ratio: 1.374673e-02	ci left: 4.713773e-01	ci right 4.779132e-01	k: 42718	n:90000
KS ci ratio: 1.358492e-01	ci left: 8.543600e-03	ci right 9.799453e-03	k: 824	n:90000
PREP   90000 perm   22 sec   (4158 perm/sec)   p_kst 9.155556e-03   p_cons 4.746444e-01   p_joint 1.631111e-02

Joint ci ratio: 8.683896e-02	ci left: 1.910208e-02	ci right 2.084592e-02	k: 1996	n:100000
Cons ci ratio: 1.303333e-02	ci left: 4.718507e-01	ci right 4.780508e-01	k: 47495	n:100000
KS ci ratio: 1.290675e-01	ci left: 8.549761e-03	ci right 9.738972e-03	k: 913	n:100000
PREP   100000 perm   24 sec   (4085 perm/sec)   p_kst 9.130000e-03   p_cons 4.749500e-01   p_joint 1.996000e-02

Joint ci ratio: 8.765997e-02	ci left: 1.707128e-02	ci right 1.864519e-02	k: 1963	n:110000
Cons ci ratio: 1.241538e-02	ci left: 4.724540e-01	ci right 4.783654e-01	k: 52295	n:110000
KS ci ratio: 1.233338e-01	ci left: 8.538453e-03	ci right 9.669475e-03	k: 1000	n:110000
PREP   110000 perm   27 sec   (4016 perm/sec)   p_kst 9.090909e-03   p_cons 4.754091e-01   p_joint 1.784545e-02

Joint ci ratio: 8.604903e-02	ci left: 1.626796e-02	ci right 1.773885e-02	k: 2039	n:120000
Cons ci ratio: 1.186880e-02	ci left: 4.733374e-01	ci right 4.789971e-01	k: 57140	n:120000
KS ci ratio: 1.179742e-01	ci left: 8.578541e-03	ci right 9.662047e-03	k: 1093	n:120000
PREP   120000 perm   30 sec   (3951 perm/sec)   p_kst 9.108333e-03   p_cons 4.761667e-01   p_joint 1.699167e-02

Joint ci ratio: 8.898628e-02	ci left: 1.405278e-02	ci right 1.536899e-02	k: 1911	n:130000
Cons ci ratio: 1.140981e-02	ci left: 4.731588e-01	ci right 4.785961e-01	k: 61864	n:130000
KS ci ratio: 1.149808e-01	ci left: 8.351752e-03	ci right 9.378028e-03	k: 1151	n:130000
PREP   130000 perm   33 sec   (3887 perm/sec)   p_kst 8.853846e-03   p_cons 4.758769e-01   p_joint 1.470000e-02

Joint ci ratio: 8.169747e-02	ci left: 1.551717e-02	ci right 1.684583e-02	k: 2264	n:140000
Cons ci ratio: 1.100009e-02	ci left: 4.730167e-01	ci right 4.782558e-01	k: 66589	n:140000
KS ci ratio: 1.105565e-01	ci left: 8.407705e-03	ci right 9.398510e-03	k: 1245	n:140000
PREP   140000 perm   37 sec   (3827 perm/sec)   p_kst 8.892857e-03   p_cons 4.756357e-01   p_joint 1.617143e-02

Joint ci ratio: 8.005437e-02	ci left: 1.510309e-02	ci right 1.636907e-02	k: 2359	n:150000
Cons ci ratio: 1.062901e-02	ci left: 4.730166e-01	ci right 4.780777e-01	k: 71332	n:150000
KS ci ratio: 1.077482e-01	ci left: 8.275148e-03	ci right 9.223988e-03	k: 1311	n:150000
PREP   150000 perm   40 sec   (3769 perm/sec)   p_kst 8.740000e-03   p_cons 4.755467e-01   p_joint 1.572667e-02

Joint ci ratio: 7.886537e-02	ci left: 1.460618e-02	ci right 1.581148e-02	k: 2432	n:160000
Cons ci ratio: 1.028279e-02	ci left: 4.735190e-01	ci right 4.784194e-01	k: 76155	n:160000
KS ci ratio: 1.040074e-01	ci left: 8.342079e-03	ci right 9.263353e-03	k: 1407	n:160000
PREP   160000 perm   43 sec   (3715 perm/sec)   p_kst 8.793750e-03   p_cons 4.759687e-01   p_joint 1.520000e-02

Joint ci ratio: 8.031967e-02	ci left: 1.326234e-02	ci right 1.437786e-02	k: 2348	n:170000
Cons ci ratio: 9.973157e-03	ci left: 4.737234e-01	ci right 4.784774e-01	k: 80937	n:170000
KS ci ratio: 1.009360e-01	ci left: 8.350019e-03	ci right 9.243324e-03	k: 1494	n:170000
PREP   170000 perm   46 sec   (3661 perm/sec)   p_kst 8.788235e-03   p_cons 4.761000e-01   p_joint 1.381176e-02

Joint ci ratio: 8.221506e-02	ci left: 1.195917e-02	ci right 1.298995e-02	k: 2244	n:180000
Cons ci ratio: 9.695302e-03	ci left: 4.736294e-01	ci right 4.782492e-01	k: 85669	n:180000
KS ci ratio: 9.843598e-02	ci left: 8.303232e-03	ci right 9.168258e-03	k: 1571	n:180000
PREP   180000 perm   50 sec   (3610 perm/sec)   p_kst 8.727778e-03   p_cons 4.759389e-01   p_joint 1.246667e-02

Outputting figure to mutsig2_images.part000000000137/PREP.5_2193_180000_0.0087278_0.47594_0.012467.png
                gene_name: PREP
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.0087 
        ci_ks_bounds_left: 0.0083 
       ci_ks_bounds_right: 0.0092 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 37 percent done.
PRKAR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.381504e-02	ci left: 7.215864e-01	ci right 7.390793e-01	k: 7304	n:10000
Cons ci ratio: 1.158024e-01	ci left: 9.681653e-02	ci right 1.088160e-01	k: 1027	n:10000
KS ci ratio: 1.844185e-02	ci left: 8.111081e-01	ci right 8.263058e-01	k: 8188	n:10000
PRKAR1A   10000 perm   2 sec   (5701 perm/sec)   p_kst 8.188000e-01   p_cons 1.027000e-01   p_joint 7.304000e-01

Joint ci ratio: 1.332468e-02	ci left: 8.068182e-01	ci right 8.176909e-01	k: 16246	n:20000
Cons ci ratio: 8.170914e-02	ci left: 9.896761e-02	ci right 1.074481e-01	k: 2063	n:20000
KS ci ratio: 1.192432e-02	ci left: 8.387443e-01	ci right 8.488556e-01	k: 16877	n:20000
PRKAR1A   20000 perm   4 sec   (5159 perm/sec)   p_kst 8.438500e-01   p_cons 1.031500e-01   p_joint 8.123000e-01

Outputting figure to mutsig2_images.part000000000137/PRKAR1A.5_1186_20000_0.84385_0.10315_0.8123.png
                gene_name: PRKAR1A
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 38 percent done.
PRKCQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.356728e-02	ci left: 7.257273e-01	ci right 7.431359e-01	k: 7345	n:10000
Cons ci ratio: 4.868751e-02	ci left: 3.836086e-01	ci right 4.028536e-01	k: 3932	n:10000
KS ci ratio: 2.825866e-02	ci left: 6.486074e-01	ci right 6.673005e-01	k: 6580	n:10000
PRKCQ   10000 perm   2 sec   (5858 perm/sec)   p_kst 6.580000e-01   p_cons 3.932000e-01   p_joint 7.345000e-01

Outputting figure to mutsig2_images.part000000000137/PRKCQ.5_2189_10000_0.658_0.3932_0.7345.png
                gene_name: PRKCQ
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 40 percent done.
PRAME
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.287024e-02	ci left: 5.773758e-01	ci right 5.967734e-01	k: 5871	n:10000
Cons ci ratio: 3.525308e-02	ci left: 5.429908e-01	ci right 5.625785e-01	k: 5528	n:10000
KS ci ratio: 4.937791e-02	ci left: 3.769402e-01	ci right 3.961259e-01	k: 3865	n:10000
PRAME   10000 perm   2 sec   (6146 perm/sec)   p_kst 3.865000e-01   p_cons 5.528000e-01   p_joint 5.871000e-01

Outputting figure to mutsig2_images.part000000000137/PRAME.4_1546_10000_0.3865_0.5528_0.5871.png
                gene_name: PRAME
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 42 percent done.
PRAMEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.397447e-02	ci left: 4.329326e-01	ci right 4.525008e-01	k: 4427	n:10000
KS ci ratio: 1.860936e-02	ci left: 8.083654e-01	ci right 8.236501e-01	k: 8161	n:10000
PRAMEF1   10000 perm   2 sec   (5880 perm/sec)   p_kst 8.161000e-01   p_cons 4.427000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRAMEF1.4_1437_10000_0.8161_0.4427_1.png
                gene_name: PRAMEF1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
PRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.084238e-02	ci left: 6.079920e-01	ci right 6.271395e-01	k: 6176	n:10000
Cons ci ratio: 7.415534e-02	ci left: 2.102365e-01	ci right 2.265279e-01	k: 2183	n:10000
KS ci ratio: 1.600840e-02	ci left: 8.500867e-01	ci right 8.639046e-01	k: 8571	n:10000
PRC1   10000 perm   2 sec   (5728 perm/sec)   p_kst 8.571000e-01   p_cons 2.183000e-01   p_joint 6.176000e-01

Outputting figure to mutsig2_images.part000000000137/PRC1.4_1923_10000_0.8571_0.2183_0.6176.png
                gene_name: PRC1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 46 percent done.
PRDM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.152702e-02	ci left: 7.599031e-01	ci right 7.765404e-01	k: 7683	n:10000
KS ci ratio: 1.225679e-02	ci left: 9.052487e-01	ci right 9.165106e-01	k: 9110	n:10000
PRDM1   10000 perm   2 sec   (5808 perm/sec)   p_kst 9.110000e-01   p_cons 7.683000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRDM1.4_2519_10000_0.911_0.7683_1.png
                gene_name: PRDM1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
PRDM14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.019438e-02	ci left: 4.775582e-01	ci right 4.972492e-01	k: 4874	n:10000
KS ci ratio: 2.348876e-02	ci left: 7.270405e-01	ci right 7.444219e-01	k: 7358	n:10000
PRDM14   10000 perm   2 sec   (6054 perm/sec)   p_kst 7.358000e-01   p_cons 4.874000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRDM14.4_1744_10000_0.7358_0.4874_1.png
                gene_name: PRDM14
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
PRKCA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.604575e-02	ci left: 2.518194e-01	ci right 2.691203e-01	k: 2604	n:10000
Cons ci ratio: 8.585952e-03	ci left: 9.500226e-01	ci right 9.583102e-01	k: 9543	n:10000
KS ci ratio: 8.971560e-02	ci left: 1.530607e-01	ci right 1.675377e-01	k: 1602	n:10000
PRKCA   10000 perm   2 sec   (5926 perm/sec)   p_kst 1.602000e-01   p_cons 9.543000e-01   p_joint 2.604000e-01

Outputting figure to mutsig2_images.part000000000137/PRKCA.4_2087_10000_0.1602_0.9543_0.2604.png
                gene_name: PRKCA
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 52 percent done.
PRKCI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.599742e-02	ci left: 6.853663e-01	ci right 7.035203e-01	k: 6945	n:10000
Cons ci ratio: 1.379167e-02	ci left: 8.836011e-01	ci right 8.959708e-01	k: 8899	n:10000
KS ci ratio: 3.203654e-02	ci left: 5.898183e-01	ci right 6.091237e-01	k: 5995	n:10000
PRKCI   10000 perm   2 sec   (6426 perm/sec)   p_kst 5.995000e-01   p_cons 8.899000e-01   p_joint 6.945000e-01

Outputting figure to mutsig2_images.part000000000137/PRKCI.4_1863_10000_0.5995_0.8899_0.6945.png
                gene_name: PRKCI
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 54 percent done.
PRAMEF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.038799e-02	ci left: 1.510978e-01	ci right 1.655018e-01	k: 1582	n:10000
Cons ci ratio: 1.580538e-02	ci left: 8.532484e-01	ci right 8.669411e-01	k: 8602	n:10000
KS ci ratio: 2.318040e-01	ci left: 2.457161e-02	ci right 3.110733e-02	k: 277	n:10000
PRAMEF4   10000 perm   2 sec   (6228 perm/sec)   p_kst 2.770000e-02   p_cons 8.602000e-01   p_joint 1.582000e-01

Joint ci ratio: 7.910556e-02	ci left: 1.050078e-01	ci right 1.137062e-01	k: 2186	n:20000
Cons ci ratio: 1.118222e-02	ci left: 8.551645e-01	ci right 8.648306e-01	k: 17201	n:20000
KS ci ratio: 1.636116e-01	ci left: 2.561344e-02	ci right 3.022518e-02	k: 557	n:20000
PRAMEF4   20000 perm   4 sec   (5562 perm/sec)   p_kst 2.785000e-02   p_cons 8.600500e-01   p_joint 1.093000e-01

Joint ci ratio: 1.048707e-01	ci left: 4.216168e-02	ci right 4.686038e-02	k: 1334	n:30000
Cons ci ratio: 9.140759e-03	ci left: 8.557860e-01	ci right 8.636776e-01	k: 25793	n:30000
KS ci ratio: 1.334255e-01	ci left: 2.609784e-02	ci right 2.986098e-02	k: 838	n:30000
PRAMEF4   30000 perm   6 sec   (5298 perm/sec)   p_kst 2.793333e-02   p_cons 8.597667e-01   p_joint 4.446667e-02

Joint ci ratio: 9.176932e-02	ci left: 4.161954e-02	ci right 4.564705e-02	k: 1744	n:40000
Cons ci ratio: 7.894410e-03	ci left: 8.569903e-01	ci right 8.638073e-01	k: 34417	n:40000
KS ci ratio: 1.149003e-01	ci left: 2.664812e-02	ci right 2.992084e-02	k: 1130	n:40000
PRAMEF4   40000 perm   8 sec   (5127 perm/sec)   p_kst 2.825000e-02   p_cons 8.604250e-01   p_joint 4.360000e-02

Joint ci ratio: 7.824333e-02	ci left: 4.592667e-02	ci right 4.968605e-02	k: 2389	n:50000
Cons ci ratio: 7.076934e-03	ci left: 8.568066e-01	ci right 8.629116e-01	k: 42994	n:50000
KS ci ratio: 1.019476e-01	ci left: 2.725395e-02	ci right 3.020110e-02	k: 1435	n:50000
PRAMEF4   50000 perm   10 sec   (5010 perm/sec)   p_kst 2.870000e-02   p_cons 8.598800e-01   p_joint 4.778000e-02

Joint ci ratio: 6.458261e-02	ci left: 5.597864e-02	ci right 5.973093e-02	k: 3470	n:60000
Cons ci ratio: 6.442324e-03	ci left: 8.577524e-01	ci right 8.633127e-01	k: 51633	n:60000
KS ci ratio: 9.343423e-02	ci left: 2.716680e-02	ci right 2.984573e-02	k: 1709	n:60000
PRAMEF4   60000 perm   12 sec   (4910 perm/sec)   p_kst 2.848333e-02   p_cons 8.605500e-01   p_joint 5.783333e-02

Outputting figure to mutsig2_images.part000000000137/PRAMEF4.3_1449_60000_0.028483_0.86055_0.057833.png
                gene_name: PRAMEF4
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.060 

Current progress: 56 percent done.
PRB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.817290e-02	ci left: 5.033509e-01	ci right 5.230414e-01	k: 5132	n:10000
Cons ci ratio: 6.857181e-02	ci left: 2.377814e-01	ci right 2.547666e-01	k: 2462	n:10000
KS ci ratio: 1.996134e-02	ci left: 7.860396e-01	ci right 8.019887e-01	k: 7941	n:10000
PRB4   10000 perm   1 sec   (6790 perm/sec)   p_kst 7.941000e-01   p_cons 2.462000e-01   p_joint 5.132000e-01

Outputting figure to mutsig2_images.part000000000137/PRB4.3_756_10000_0.7941_0.2462_0.5132.png
                gene_name: PRB4
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 58 percent done.
PRDM16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.245171e-02	ci left: 5.835963e-01	ci right 6.029494e-01	k: 5933	n:10000
Cons ci ratio: 2.774561e-02	ci left: 6.568600e-01	ci right 6.754431e-01	k: 6662	n:10000
KS ci ratio: 6.816792e-02	ci left: 2.399555e-01	ci right 2.569912e-01	k: 2484	n:10000
PRDM16   10000 perm   2 sec   (5210 perm/sec)   p_kst 2.484000e-01   p_cons 6.662000e-01   p_joint 5.933000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM16.3_3899_10000_0.2484_0.6662_0.5933.png
                gene_name: PRDM16
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 60 percent done.
PRDM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.561827e-02	ci left: 6.916168e-01	ci right 7.096662e-01	k: 7007	n:10000
KS ci ratio: 1.076832e-02	ci left: 9.247196e-01	ci right 9.348283e-01	k: 9299	n:10000
PRDM4   10000 perm   2 sec   (5730 perm/sec)   p_kst 9.299000e-01   p_cons 7.007000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRDM4.3_2450_10000_0.9299_0.7007_1.png
                gene_name: PRDM4
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
PRELP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.528310e-02	ci left: 2.562705e-01	ci right 2.736666e-01	k: 2649	n:10000
Cons ci ratio: 1.317679e-01	ci left: 7.591905e-02	ci right 8.672633e-02	k: 812	n:10000
KS ci ratio: 4.007393e-02	ci left: 4.790570e-01	ci right 4.987494e-01	k: 4889	n:10000
PRELP   10000 perm   2 sec   (6508 perm/sec)   p_kst 4.889000e-01   p_cons 8.120000e-02   p_joint 2.649000e-01

Joint ci ratio: 3.439097e-02	ci left: 3.869696e-01	ci right 4.005613e-01	k: 7875	n:20000
Cons ci ratio: 9.165060e-02	ci left: 7.994658e-02	ci right 8.767492e-02	k: 1675	n:20000
KS ci ratio: 2.878177e-02	ci left: 4.742036e-01	ci right 4.881019e-01	k: 9623	n:20000
PRELP   20000 perm   3 sec   (5775 perm/sec)   p_kst 4.811500e-01   p_cons 8.375000e-02   p_joint 3.937500e-01

Outputting figure to mutsig2_images.part000000000137/PRELP.3_1157_20000_0.48115_0.08375_0.39375.png
                gene_name: PRELP
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 63 percent done.
PRICKLE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.869324e-02	ci left: 1.909179e-01	ci right 2.066579e-01	k: 1987	n:10000
Cons ci ratio: 1.694391e-01	ci left: 4.648153e-02	ci right 5.518251e-02	k: 507	n:10000
KS ci ratio: 3.536014e-02	ci left: 5.414881e-01	ci right 5.610820e-01	k: 5513	n:10000
PRICKLE3   10000 perm   2 sec   (5976 perm/sec)   p_kst 5.513000e-01   p_cons 5.070000e-02   p_joint 1.987000e-01

Joint ci ratio: 4.935219e-02	ci left: 2.338463e-01	ci right 2.457294e-01	k: 4795	n:20000
Cons ci ratio: 1.181691e-01	ci left: 4.906042e-02	ci right 5.527060e-02	k: 1042	n:20000
KS ci ratio: 2.466071e-02	ci left: 5.512345e-01	ci right 5.650486e-01	k: 11163	n:20000
PRICKLE3   20000 perm   4 sec   (5388 perm/sec)   p_kst 5.581500e-01   p_cons 5.210000e-02   p_joint 2.397500e-01

Joint ci ratio: 4.593477e-02	ci left: 1.908270e-01	ci right 1.998320e-01	k: 5859	n:30000
Cons ci ratio: 9.739180e-02	ci left: 4.873281e-02	ci right 5.375454e-02	k: 1536	n:30000
KS ci ratio: 2.030303e-02	ci left: 5.484202e-01	ci right 5.597026e-01	k: 16622	n:30000
PRICKLE3   30000 perm   6 sec   (5135 perm/sec)   p_kst 5.540667e-01   p_cons 5.120000e-02   p_joint 1.953000e-01

Outputting figure to mutsig2_images.part000000000137/PRICKLE3.3_1884_30000_0.55407_0.0512_0.1953.png
                gene_name: PRICKLE3
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 65 percent done.
PRKAA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.657045e-02	ci left: 3.151274e-01	ci right 3.335750e-01	k: 3243	n:10000
Cons ci ratio: 1.366475e-02	ci left: 8.854448e-01	ci right 8.977261e-01	k: 8917	n:10000
KS ci ratio: 6.328272e-02	ci left: 2.684428e-01	ci right 2.860871e-01	k: 2772	n:10000
PRKAA1   10000 perm   2 sec   (6547 perm/sec)   p_kst 2.772000e-01   p_cons 8.917000e-01   p_joint 3.243000e-01

Outputting figure to mutsig2_images.part000000000137/PRKAA1.3_1765_10000_0.2772_0.8917_0.3243.png
                gene_name: PRKAA1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 67 percent done.
PRKACG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.641285e-03	ci left: 9.768488e-01	ci right 9.824669e-01	k: 9798	n:10000
KS ci ratio: 3.640872e-02	ci left: 5.269672e-01	ci right 5.466113e-01	k: 5368	n:10000
PRKACG   10000 perm   1 sec   (6972 perm/sec)   p_kst 5.368000e-01   p_cons 9.798000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRKACG.3_1060_10000_0.5368_0.9798_1.png
                gene_name: PRKACG
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
PRKAG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.052633e-02	ci left: 2.864688e-01	ci right 3.044505e-01	k: 2954	n:10000
Cons ci ratio: 7.250119e-02	ci left: 2.179321e-01	ci right 2.344277e-01	k: 2261	n:10000
KS ci ratio: 3.235768e-02	ci left: 5.850011e-01	ci right 6.043437e-01	k: 5947	n:10000
PRKAG2   10000 perm   2 sec   (6624 perm/sec)   p_kst 5.947000e-01   p_cons 2.261000e-01   p_joint 2.954000e-01

Outputting figure to mutsig2_images.part000000000137/PRKAG2.3_1774_10000_0.5947_0.2261_0.2954.png
                gene_name: PRKAG2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 71 percent done.
PRKAR2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.089973e-02	ci left: 9.230676e-01	ci right 9.332812e-01	k: 9283	n:10000
KS ci ratio: 3.437065e-02	ci left: 5.555163e-01	ci right 5.750457e-01	k: 5653	n:10000
PRKAR2B   10000 perm   2 sec   (5685 perm/sec)   p_kst 5.653000e-01   p_cons 9.283000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRKAR2B.3_1301_10000_0.5653_0.9283_1.png
                gene_name: PRKAR2B
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
PRKCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.150556e-02	ci left: 5.978492e-01	ci right 6.170882e-01	k: 6075	n:10000
Cons ci ratio: 1.435501e-02	ci left: 8.753109e-01	ci right 8.880658e-01	k: 8818	n:10000
KS ci ratio: 4.619910e-02	ci left: 4.088062e-01	ci right 4.282413e-01	k: 4185	n:10000
PRKCD   10000 perm   2 sec   (5765 perm/sec)   p_kst 4.185000e-01   p_cons 8.818000e-01   p_joint 6.075000e-01

Outputting figure to mutsig2_images.part000000000137/PRKCD.3_2099_10000_0.4185_0.8818_0.6075.png
                gene_name: PRKCD
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 75 percent done.
PRKCDBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.266055e-02	ci left: 5.804858e-01	ci right 5.998616e-01	k: 5902	n:10000
Cons ci ratio: 1.847290e-02	ci left: 8.106001e-01	ci right 8.258141e-01	k: 8183	n:10000
KS ci ratio: 6.170998e-02	ci left: 2.785431e-01	ci right 2.963808e-01	k: 2874	n:10000
PRKCDBP   10000 perm   1 sec   (6698 perm/sec)   p_kst 2.874000e-01   p_cons 8.183000e-01   p_joint 5.902000e-01

Outputting figure to mutsig2_images.part000000000137/PRKCDBP.3_794_10000_0.2874_0.8183_0.5902.png
                gene_name: PRKCDBP
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 77 percent done.
PRKCH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.160444e-02	ci left: 3.563500e-01	ci right 3.753282e-01	k: 3658	n:10000
Cons ci ratio: 1.238134e-01	ci left: 8.543267e-02	ci right 9.680682e-02	k: 910	n:10000
KS ci ratio: 3.738618e-02	ci left: 5.137554e-01	ci right 5.334308e-01	k: 5236	n:10000
PRKCH   10000 perm   2 sec   (6007 perm/sec)   p_kst 5.236000e-01   p_cons 9.100000e-02   p_joint 3.658000e-01

Joint ci ratio: 3.363230e-02	ci left: 3.976375e-01	ci right 4.112903e-01	k: 8089	n:20000
Cons ci ratio: 8.718300e-02	ci left: 8.778382e-02	ci right 9.583530e-02	k: 1835	n:20000
KS ci ratio: 2.658396e-02	ci left: 5.138989e-01	ci right 5.277950e-01	k: 10417	n:20000
PRKCH   20000 perm   4 sec   (5396 perm/sec)   p_kst 5.208500e-01   p_cons 9.175000e-02   p_joint 4.044500e-01

Outputting figure to mutsig2_images.part000000000137/PRKCH.3_2108_20000_0.52085_0.09175_0.40445.png
                gene_name: PRKCH
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.096 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 79 percent done.
PRAMEF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.115117e-02	ci left: 9.198691e-01	ci right 9.302817e-01	k: 9252	n:10000
KS ci ratio: 2.480849e-02	ci left: 7.050317e-01	ci right 7.228435e-01	k: 7140	n:10000
PRAMEF10   10000 perm   1 sec   (6802 perm/sec)   p_kst 7.140000e-01   p_cons 9.252000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRAMEF10.2_1437_10000_0.714_0.9252_1.png
                gene_name: PRAMEF10
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
PRAMEF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.723519e-02	ci left: 3.100670e-01	ci right 3.284384e-01	k: 3192	n:10000
Cons ci ratio: 6.314093e-02	ci left: 2.693338e-01	ci right 2.869956e-01	k: 2781	n:10000
KS ci ratio: 6.262613e-02	ci left: 2.726011e-01	ci right 2.903264e-01	k: 2814	n:10000
PRAMEF12   10000 perm   1 sec   (6802 perm/sec)   p_kst 2.814000e-01   p_cons 2.781000e-01   p_joint 3.192000e-01

Outputting figure to mutsig2_images.part000000000137/PRAMEF12.2_1464_10000_0.2814_0.2781_0.3192.png
                gene_name: PRAMEF12
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 83 percent done.
PRCP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.997354e-02	ci left: 7.858368e-01	ci right 8.017917e-01	k: 7939	n:10000
KS ci ratio: 5.189480e-02	ci left: 3.537651e-01	ci right 3.727147e-01	k: 3632	n:10000
PRCP   10000 perm   2 sec   (6462 perm/sec)   p_kst 3.632000e-01   p_cons 7.939000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRCP.2_1594_10000_0.3632_0.7939_1.png
                gene_name: PRCP
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
PRDM11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.797419e-01	ci left: 4.130699e-02	ci right 4.956044e-02	k: 453	n:10000
Cons ci ratio: 1.506606e-01	ci left: 5.860517e-02	ci right 6.825107e-02	k: 633	n:10000
KS ci ratio: 1.155520e-01	ci left: 9.720616e-02	ci right 1.092261e-01	k: 1031	n:10000
PRDM11   10000 perm   2 sec   (6504 perm/sec)   p_kst 1.031000e-01   p_cons 6.330000e-02   p_joint 4.530000e-02

Joint ci ratio: 1.509924e-01	ci left: 3.013378e-02	ci right 3.510332e-02	k: 651	n:20000
Cons ci ratio: 1.073971e-01	ci left: 5.908656e-02	ci right 6.584133e-02	k: 1248	n:20000
KS ci ratio: 8.299286e-02	ci left: 9.617007e-02	ci right 1.045465e-01	k: 2006	n:20000
PRDM11   20000 perm   3 sec   (5779 perm/sec)   p_kst 1.003000e-01   p_cons 6.240000e-02   p_joint 3.255000e-02

Joint ci ratio: 1.447362e-01	ci left: 2.213689e-02	ci right 2.562282e-02	k: 715	n:30000
Cons ci ratio: 9.297904e-02	ci left: 5.332686e-02	ci right 5.855955e-02	k: 1677	n:30000
KS ci ratio: 6.795845e-02	ci left: 9.643046e-02	ci right 1.032473e-01	k: 2994	n:30000
PRDM11   30000 perm   5 sec   (5497 perm/sec)   p_kst 9.980000e-02   p_cons 5.590000e-02   p_joint 2.383333e-02

Joint ci ratio: 7.996247e-02	ci left: 5.440430e-02	ci right 5.896033e-02	k: 2266	n:40000
Cons ci ratio: 8.052886e-02	ci left: 5.366850e-02	ci right 5.819623e-02	k: 2236	n:40000
KS ci ratio: 5.885667e-02	ci left: 9.687929e-02	ci right 1.027789e-01	k: 3992	n:40000
PRDM11   40000 perm   8 sec   (5299 perm/sec)   p_kst 9.980000e-02   p_cons 5.590000e-02   p_joint 5.665000e-02

Outputting figure to mutsig2_images.part000000000137/PRDM11.2_1564_40000_0.0998_0.0559_0.05665.png
                gene_name: PRDM11
               theta_stop: 0.081 
                    nperm: 40000 
                     p_ks: 0.100 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.059 

Current progress: 87 percent done.
PRDM12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.479208e-01	ci left: 5.903663e-03	ci right 9.392367e-03	k: 75	n:10000
Cons ci ratio: 1.604833e-01	ci left: 5.176584e-02	ci right 6.089478e-02	k: 562	n:10000
KS ci ratio: 1.323001e-01	ci left: 7.533730e-02	ci right 8.610844e-02	k: 806	n:10000
PRDM12   10000 perm   1 sec   (7028 perm/sec)   p_kst 8.060000e-02   p_cons 5.620000e-02   p_joint 7.500000e-03

Joint ci ratio: 1.960353e-01	ci left: 1.767633e-02	ci right 2.156510e-02	k: 391	n:20000
Cons ci ratio: 1.179902e-01	ci left: 4.920621e-02	ci right 5.542476e-02	k: 1045	n:20000
KS ci ratio: 9.237437e-02	ci left: 7.877186e-02	ci right 8.645000e-02	k: 1651	n:20000
PRDM12   20000 perm   3 sec   (6188 perm/sec)   p_kst 8.255000e-02   p_cons 5.225000e-02   p_joint 1.955000e-02

Joint ci ratio: 1.333438e-01	ci left: 2.613009e-02	ci right 2.989539e-02	k: 839	n:30000
Cons ci ratio: 9.519244e-02	ci left: 5.094770e-02	ci right 5.607254e-02	k: 1604	n:30000
KS ci ratio: 7.455811e-02	ci left: 8.121249e-02	ci right 8.753494e-02	k: 2530	n:30000
PRDM12   30000 perm   5 sec   (5866 perm/sec)   p_kst 8.433333e-02   p_cons 5.346667e-02   p_joint 2.796667e-02

Joint ci ratio: 1.176591e-01	ci left: 2.540924e-02	ci right 2.860992e-02	k: 1079	n:40000
Cons ci ratio: 8.293185e-02	ci left: 5.070198e-02	ci right 5.511321e-02	k: 2115	n:40000
KS ci ratio: 6.467065e-02	ci left: 8.139794e-02	ci right 8.686261e-02	k: 3364	n:40000
PRDM12   40000 perm   7 sec   (5643 perm/sec)   p_kst 8.410000e-02   p_cons 5.287500e-02   p_joint 2.697500e-02

Joint ci ratio: 9.595467e-02	ci left: 3.074801e-02	ci right 3.386660e-02	k: 1614	n:50000
Cons ci ratio: 7.423595e-02	ci left: 5.085580e-02	ci right 5.479632e-02	k: 2640	n:50000
KS ci ratio: 5.778520e-02	ci left: 8.183940e-02	ci right 8.672899e-02	k: 4213	n:50000
PRDM12   50000 perm   9 sec   (5462 perm/sec)   p_kst 8.426000e-02   p_cons 5.280000e-02   p_joint 3.228000e-02

Outputting figure to mutsig2_images.part000000000137/PRDM12.2_1124_50000_0.08426_0.0528_0.03228.png
                gene_name: PRDM12
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.082 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 88 percent done.
PRDM13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.585987e-01	ci left: 3.541199e-03	ci right 6.359123e-03	k: 48	n:10000
Cons ci ratio: 1.797419e-01	ci left: 4.130699e-02	ci right 4.956044e-02	k: 453	n:10000
KS ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
PRDM13   10000 perm   2 sec   (6154 perm/sec)   p_kst 1.060000e-02   p_cons 4.530000e-02   p_joint 4.800000e-03

Joint ci ratio: 5.592997e-01	ci left: 1.770085e-03	ci right 3.180807e-03	k: 48	n:20000
Cons ci ratio: 1.284389e-01	ci left: 4.163516e-02	ci right 4.739821e-02	k: 889	n:20000
KS ci ratio: 2.723712e-01	ci left: 8.854025e-03	ci right 1.169107e-02	k: 204	n:20000
PRDM13   20000 perm   4 sec   (5508 perm/sec)   p_kst 1.020000e-02   p_cons 4.445000e-02   p_joint 2.400000e-03

Joint ci ratio: 3.015816e-01	ci left: 4.756245e-03	ci right 6.474963e-03	k: 167	n:30000
Cons ci ratio: 9.816841e-02	ci left: 4.798397e-02	ci right 5.297021e-02	k: 1513	n:30000
KS ci ratio: 2.278841e-01	ci left: 8.653395e-03	ci right 1.090973e-02	k: 292	n:30000
PRDM13   30000 perm   6 sec   (5245 perm/sec)   p_kst 9.733333e-03   p_cons 5.043333e-02   p_joint 5.566667e-03

Joint ci ratio: 3.472868e-01	ci left: 2.624692e-03	ci right 3.749350e-03	k: 126	n:40000
Cons ci ratio: 8.415669e-02	ci left: 4.928071e-02	ci right 5.363470e-02	k: 2057	n:40000
KS ci ratio: 1.967616e-01	ci left: 8.857849e-03	ci right 1.081430e-02	k: 392	n:40000
PRDM13   40000 perm   8 sec   (5078 perm/sec)   p_kst 9.800000e-03   p_cons 5.142500e-02   p_joint 3.150000e-03

Joint ci ratio: 3.055951e-01	ci left: 2.779382e-03	ci right 3.799634e-03	k: 163	n:50000
Cons ci ratio: 7.523367e-02	ci left: 4.955919e-02	ci right 5.345309e-02	k: 2574	n:50000
KS ci ratio: 1.723502e-01	ci left: 9.356953e-03	ci right 1.114060e-02	k: 511	n:50000
PRDM13   50000 perm   10 sec   (4939 perm/sec)   p_kst 1.022000e-02   p_cons 5.148000e-02   p_joint 3.260000e-03

Joint ci ratio: 2.519997e-01	ci left: 3.510737e-03	ci right 4.538152e-03	k: 240	n:60000
Cons ci ratio: 6.855019e-02	ci left: 4.990889e-02	ci right 5.346797e-02	k: 3100	n:60000
KS ci ratio: 1.571272e-01	ci left: 9.459494e-03	ci right 1.108840e-02	k: 615	n:60000
PRDM13   60000 perm   12 sec   (4823 perm/sec)   p_kst 1.025000e-02   p_cons 5.166667e-02   p_joint 4.000000e-03

Joint ci ratio: 2.531287e-01	ci left: 2.982334e-03	ci right 3.859626e-03	k: 238	n:70000
Cons ci ratio: 6.387429e-02	ci left: 4.942397e-02	ci right 5.269909e-02	k: 3573	n:70000
KS ci ratio: 1.454376e-01	ci left: 9.523951e-03	ci right 1.103134e-02	k: 718	n:70000
PRDM13   70000 perm   15 sec   (4721 perm/sec)   p_kst 1.025714e-02   p_cons 5.104286e-02   p_joint 3.400000e-03

Joint ci ratio: 1.733677e-01	ci left: 5.799316e-03	ci right 6.911939e-03	k: 507	n:80000
Cons ci ratio: 5.979968e-02	ci left: 4.944861e-02	ci right 5.250906e-02	k: 4077	n:80000
KS ci ratio: 1.347022e-01	ci left: 9.768969e-03	ci right 1.119187e-02	k: 837	n:80000
PRDM13   80000 perm   17 sec   (4619 perm/sec)   p_kst 1.046250e-02   p_cons 5.096250e-02   p_joint 6.337500e-03

Joint ci ratio: 1.616827e-01	ci left: 5.964062e-03	ci right 7.023679e-03	k: 583	n:90000
Cons ci ratio: 5.627477e-02	ci left: 4.971416e-02	ci right 5.260375e-02	k: 4603	n:90000
KS ci ratio: 1.257740e-01	ci left: 1.000578e-02	ci right 1.135937e-02	k: 960	n:90000
PRDM13   90000 perm   20 sec   (4531 perm/sec)   p_kst 1.066667e-02   p_cons 5.114444e-02   p_joint 6.477778e-03

Joint ci ratio: 1.594181e-01	ci left: 5.530725e-03	ci right 6.498265e-03	k: 600	n:100000
Cons ci ratio: 5.356130e-02	ci left: 4.947666e-02	ci right 5.220947e-02	k: 5083	n:100000
KS ci ratio: 1.202208e-01	ci left: 9.887173e-03	ci right 1.116146e-02	k: 1051	n:100000
PRDM13   100000 perm   22 sec   (4448 perm/sec)   p_kst 1.051000e-02   p_cons 5.083000e-02   p_joint 6.000000e-03

Joint ci ratio: 1.465349e-01	ci left: 5.989813e-03	ci right 6.945579e-03	k: 710	n:110000
Cons ci ratio: 5.093165e-02	ci left: 4.979704e-02	ci right 5.240851e-02	k: 5620	n:110000
KS ci ratio: 1.140892e-01	ci left: 1.001203e-02	ci right 1.123216e-02	k: 1167	n:110000
PRDM13   110000 perm   25 sec   (4366 perm/sec)   p_kst 1.060909e-02   p_cons 5.109091e-02   p_joint 6.454545e-03

Joint ci ratio: 1.399914e-01	ci left: 6.037033e-03	ci right 6.953728e-03	k: 778	n:120000
Cons ci ratio: 4.875079e-02	ci left: 4.987728e-02	ci right 5.237780e-02	k: 6134	n:120000
KS ci ratio: 1.093268e-01	ci left: 1.002015e-02	ci right 1.118701e-02	k: 1271	n:120000
PRDM13   120000 perm   28 sec   (4293 perm/sec)   p_kst 1.059167e-02   p_cons 5.111667e-02   p_joint 6.483333e-03

Joint ci ratio: 1.295623e-01	ci left: 6.539078e-03	ci right 7.452352e-03	k: 908	n:130000
Cons ci ratio: 4.685405e-02	ci left: 4.989396e-02	ci right 5.229535e-02	k: 6641	n:130000
KS ci ratio: 1.048841e-01	ci left: 1.007288e-02	ci right 1.119527e-02	k: 1381	n:130000
PRDM13   130000 perm   31 sec   (4229 perm/sec)   p_kst 1.062308e-02   p_cons 5.108462e-02   p_joint 6.984615e-03

Joint ci ratio: 1.252315e-01	ci left: 6.514571e-03	ci right 7.391751e-03	k: 972	n:140000
Cons ci ratio: 4.525288e-02	ci left: 4.971908e-02	ci right 5.202814e-02	k: 7121	n:140000
KS ci ratio: 1.012860e-01	ci left: 1.004925e-02	ci right 1.112831e-02	k: 1481	n:140000
PRDM13   140000 perm   34 sec   (4156 perm/sec)   p_kst 1.057857e-02   p_cons 5.086429e-02   p_joint 6.942857e-03

Joint ci ratio: 1.204915e-01	ci left: 6.584302e-03	ci right 7.434922e-03	k: 1050	n:150000
Cons ci ratio: 4.373872e-02	ci left: 4.971390e-02	ci right 5.194351e-02	k: 7623	n:150000
KS ci ratio: 9.800323e-02	ci left: 1.003585e-02	ci right 1.107653e-02	k: 1582	n:150000
PRDM13   150000 perm   37 sec   (4097 perm/sec)   p_kst 1.054667e-02   p_cons 5.082000e-02   p_joint 7.000000e-03

Joint ci ratio: 1.171434e-01	ci left: 6.542694e-03	ci right 7.362825e-03	k: 1111	n:160000
Cons ci ratio: 4.233686e-02	ci left: 4.977855e-02	ci right 5.193776e-02	k: 8136	n:160000
KS ci ratio: 9.522045e-02	ci left: 9.981901e-03	ci right 1.098596e-02	k: 1676	n:160000
PRDM13   160000 perm   40 sec   (4039 perm/sec)   p_kst 1.047500e-02   p_cons 5.085000e-02   p_joint 6.943750e-03

Joint ci ratio: 1.138644e-01	ci left: 6.529134e-03	ci right 7.323116e-03	k: 1176	n:170000
Cons ci ratio: 4.108673e-02	ci left: 4.977836e-02	ci right 5.187229e-02	k: 8639	n:170000
KS ci ratio: 9.242494e-02	ci left: 9.986397e-03	ci right 1.095982e-02	k: 1779	n:170000
PRDM13   170000 perm   43 sec   (3982 perm/sec)   p_kst 1.046471e-02   p_cons 5.081765e-02   p_joint 6.917647e-03

Joint ci ratio: 1.108911e-01	ci left: 6.511963e-03	ci right 7.281825e-03	k: 1240	n:180000
Cons ci ratio: 3.989981e-02	ci left: 4.987808e-02	ci right 5.191419e-02	k: 9160	n:180000
KS ci ratio: 9.005554e-02	ci left: 9.947323e-03	ci right 1.089077e-02	k: 1874	n:180000
PRDM13   180000 perm   46 sec   (3929 perm/sec)   p_kst 1.041111e-02   p_cons 5.088889e-02   p_joint 6.888889e-03

Joint ci ratio: 1.075187e-01	ci left: 6.573672e-03	ci right 7.325700e-03	k: 1319	n:190000
Cons ci ratio: 3.883128e-02	ci left: 4.991593e-02	ci right 5.189780e-02	k: 9671	n:190000
KS ci ratio: 8.750112e-02	ci left: 9.995030e-03	ci right 1.091473e-02	k: 1985	n:190000
PRDM13   190000 perm   49 sec   (3873 perm/sec)   p_kst 1.044737e-02   p_cons 5.090000e-02   p_joint 6.942105e-03

Joint ci ratio: 1.040625e-01	ci left: 6.678234e-03	ci right 7.416162e-03	k: 1408	n:200000
Cons ci ratio: 3.785599e-02	ci left: 4.992092e-02	ci right 5.185212e-02	k: 10176	n:200000
KS ci ratio: 8.496834e-02	ci left: 1.008236e-02	ci right 1.098191e-02	k: 2105	n:200000
PRDM13   200000 perm   52 sec   (3820 perm/sec)   p_kst 1.052500e-02   p_cons 5.088000e-02   p_joint 7.040000e-03

Joint ci ratio: 1.015702e-01	ci left: 6.684986e-03	ci right 7.404913e-03	k: 1478	n:210000
Cons ci ratio: 3.694704e-02	ci left: 4.993545e-02	ci right 5.181983e-02	k: 10683	n:210000
KS ci ratio: 8.292630e-02	ci left: 1.009175e-02	ci right 1.096946e-02	k: 2210	n:210000
PRDM13   210000 perm   56 sec   (3768 perm/sec)   p_kst 1.052381e-02   p_cons 5.087143e-02   p_joint 7.038095e-03

Joint ci ratio: 9.895964e-02	ci left: 6.731217e-03	ci right 7.436409e-03	k: 1557	n:220000
Cons ci ratio: 3.614824e-02	ci left: 4.982297e-02	ci right 5.166162e-02	k: 11162	n:220000
KS ci ratio: 8.095413e-02	ci left: 1.011834e-02	ci right 1.097644e-02	k: 2319	n:220000
PRDM13   220000 perm   59 sec   (3717 perm/sec)   p_kst 1.054091e-02   p_cons 5.073636e-02   p_joint 7.077273e-03

Outputting figure to mutsig2_images.part000000000137/PRDM13.2_2140_220000_0.010541_0.050736_0.0070773.png
                gene_name: PRDM13
               theta_stop: 0.099 
                    nperm: 220000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.0071 
     ci_joint_bounds_left: 0.0067 
    ci_joint_bounds_right: 0.0074 

Current progress: 90 percent done.
PRDM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.927536e-03	ci left: 9.662559e-01	ci right 9.730668e-01	k: 9698	n:10000
Cons ci ratio: 1.993693e-02	ci left: 7.864452e-01	ci right 8.023829e-01	k: 7945	n:10000
KS ci ratio: 5.267779e-02	ci left: 3.469066e-01	ci right 3.657772e-01	k: 3563	n:10000
PRDM7   10000 perm   2 sec   (6502 perm/sec)   p_kst 3.563000e-01   p_cons 7.945000e-01   p_joint 9.698000e-01

Outputting figure to mutsig2_images.part000000000137/PRDM7.2_1519_10000_0.3563_0.7945_0.9698.png
                gene_name: PRDM7
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 92 percent done.
PRDX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.174386e-02	ci left: 5.942350e-01	ci right 6.135045e-01	k: 6039	n:10000
Cons ci ratio: 4.376126e-02	ci left: 4.353266e-01	ci right 4.549054e-01	k: 4451	n:10000
KS ci ratio: 8.895677e-02	ci left: 1.553186e-01	ci right 1.698785e-01	k: 1625	n:10000
PRDX6   10000 perm   1 sec   (6977 perm/sec)   p_kst 1.625000e-01   p_cons 4.451000e-01   p_joint 6.039000e-01

Outputting figure to mutsig2_images.part000000000137/PRDX6.2_695_10000_0.1625_0.4451_0.6039.png
                gene_name: PRDX6
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 94 percent done.
PREB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.644165e-02	ci left: 3.161198e-01	ci right 3.345821e-01	k: 3253	n:10000
Cons ci ratio: 2.789543e-02	ci left: 6.544443e-01	ci right 6.730602e-01	k: 6638	n:10000
KS ci ratio: 1.031447e-01	ci left: 1.196532e-01	ci right 1.327654e-01	k: 1261	n:10000
PREB   10000 perm   1 sec   (6669 perm/sec)   p_kst 1.261000e-01   p_cons 6.638000e-01   p_joint 3.253000e-01

Joint ci ratio: 3.068791e-02	ci left: 4.423391e-01	ci right 4.561757e-01	k: 8985	n:20000
Cons ci ratio: 1.977664e-02	ci left: 6.560491e-01	ci right 6.692036e-01	k: 13253	n:20000
KS ci ratio: 7.368931e-02	ci left: 1.193638e-01	ci right 1.285458e-01	k: 2478	n:20000
PREB   20000 perm   3 sec   (5924 perm/sec)   p_kst 1.239000e-01   p_cons 6.626500e-01   p_joint 4.492500e-01

Outputting figure to mutsig2_images.part000000000137/PREB.2_1290_20000_0.1239_0.66265_0.44925.png
                gene_name: PREB
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 96 percent done.
PREPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.645772e-02	ci left: 6.778079e-01	ci right 6.960831e-01	k: 6870	n:10000
KS ci ratio: 3.024481e-02	ci left: 6.172347e-01	ci right 6.362914e-01	k: 6268	n:10000
PREPL   10000 perm   2 sec   (6175 perm/sec)   p_kst 6.268000e-01   p_cons 6.870000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PREPL.2_2240_10000_0.6268_0.687_1.png
                gene_name: PREPL
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
PRKAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.061489e-02	ci left: 4.723628e-01	ci right 4.920476e-01	k: 4822	n:10000
KS ci ratio: 2.333176e-02	ci left: 7.296672e-01	ci right 7.469937e-01	k: 7384	n:10000
PRKAB1   10000 perm   1 sec   (6824 perm/sec)   p_kst 7.384000e-01   p_cons 4.822000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000137/PRKAB1.2_841_10000_0.7384_0.4822_1.png
                gene_name: PRKAB1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000137
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 137 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1647>
Subject: Job 9894093: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1647>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000138> was used as the working directory.
Started at Sat Oct  6 00:25:57 2012
Results reported at Sat Oct  6 01:02:39 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000138.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000138.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 138  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000138.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2264.45 sec.
    Max Memory :      3504 MB
    Max Swap   :      5913 MB

    Max Processes  :         7
    Max Threads    :        60

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
138
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 138
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 138: processing genes 12352 - 12441
Calculating significance of each gene.
Using projection method.
12352	PRKCZ	1
12353	PRKD1	4.064732e-04
12354	PRKD2	6.495276e-01
12355	PRKD3	3.242571e-02
12356	PRKDC	8.609222e-01
12357	PRKG1	3.185948e-02
12358	PRKG2	6.015658e-01
12359	PRKRA	1.725925e-01
12360	PRKRIP1	1
12361	PRKRIR	1.039538e-01
12362	PRKX	5.756351e-01
12363	PRL	1.029221e-01
12364	PRLH	1
12365	PRLHR	1
12366	PRLR	2.184253e-01
12367	PRM1	7.461587e-02
12368	PRM2	1.203945e-01
12369	PRM3	1
12370	PRMT1	8.206870e-01
12371	PRMT10	4.325371e-02
12372	PRMT2	8.723087e-01
12373	PRMT3	4.136281e-01
12374	PRMT5	9.587198e-01
12375	PRMT6	8.093004e-01
12376	PRMT7	6.498174e-01
12377	PRMT8	1.472630e-02
12378	PRND	1
12379	PRNP	3.724104e-01
12380	PROC	9.135625e-01
12381	PROCA1	3.073938e-02
12382	PROCR	1
12383	PRODH	1
12384	PRODH2	7.947282e-01
12385	PROK1	1.854372e-01
12386	PROK2	9.304466e-02
12387	PROKR1	1.374592e-03
12388	PROKR2	7.417192e-01
12389	PROL1	5.763051e-01
12390	PROM1	8.276676e-01
12391	PROM2	4.582764e-01
12392	PROP1	6.086644e-01
12393	PROS1	5.646374e-01
12394	PROSC	5.471556e-01
12395	PROX1	7.498304e-01
12396	PROX2	8.378656e-01
12397	PROZ	8.298253e-01
12398	PRPF18	8.114752e-02
12399	PRPF19	4.996249e-01
12400	PRPF3	9.270790e-01
12401	PRPF31	5.679135e-01
12402	PRPF38A	5.253348e-01
12403	PRPF38B	2.273437e-01
12404	PRPF39	1
In gene PRPF4 the following bins exceed PROBCAP:
    COAD-AA-A01Z	categ 6	N = 1625    n = 1	mu =   3.62e-07
12405	PRPF4	1.749910e-01
In gene PRPF40A the following bins exceed PROBCAP:
    READ-AG-4015	categ 6	N = 2490    n = 1	mu =   3.29e-07
12406	PRPF40A	3.308745e-01
12407	PRPF40B	5.785990e-01
12408	PRPF4B	6.014212e-01
12409	PRPF6	9.014405e-01
12410	PRPF8	6.417458e-01
12411	PRPH	7.682300e-01
12412	PRPH2	1.759826e-01
12413	PRPS1	5.073138e-01
12414	PRPS1L1	6.460456e-01
12415	PRPS2	3.011258e-01
12416	PRPSAP1	1.479619e-01
12417	PRPSAP2	4.296923e-01
12418	PRR11	3.354841e-01
12419	PRR12	9.679023e-01
12420	PRR13	1.761466e-01
12421	PRR14	8.357436e-01
12422	PRR15	1
12423	PRR15L	1
12424	PRR16	6.077127e-02
12425	PRR19	7.014956e-01
12426	PRR21	1.804475e-01
12427	PRR22	6.394506e-01
12428	PRR23B	4.869823e-01
12429	PRR25	1
12430	PRR3	1
12431	PRR4	1.899227e-01
12432	PRR5	1
12433	PRR5-ARHGAP8	2.431936e-01
12434	PRR5L	1.136485e-01
12435	PRR7	1
12436	PRRC1	7.552591e-01
12437	PRRG1	6.909923e-01
12438	PRRG2	1
12439	PRRG3	7.508636e-01
12440	PRRG4	5.626126e-02
12441	PRRT1	4.901183e-01
Done

Running MutSig 2:
Scatter job 138: processing genes 12352 - 12441
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PRKDC
Processing conservation and coverage...
78% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.275514e-02	ci left: 5.790813e-01	ci right 5.984670e-01	k: 5888	n:10000
Cons ci ratio: 5.152669e-02	ci left: 3.570460e-01	ci right 3.760318e-01	k: 3665	n:10000
KS ci ratio: 2.143635e-02	ci left: 7.614214e-01	ci right 7.780212e-01	k: 7698	n:10000
PRKDC   10000 perm   3 sec   (2869 perm/sec)   p_kst 7.698000e-01   p_cons 3.665000e-01   p_joint 5.888000e-01

Outputting figure to mutsig2_images.part000000000138/PRKDC.18_12730_10000_0.7698_0.3665_0.5888.png
                gene_name: PRKDC
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 2 percent done.
PRKD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.346742e-01	ci left: 7.281740e-02	ci right 8.342992e-02	k: 780	n:10000
Cons ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
KS ci ratio: 1.027259e-01	ci left: 1.205332e-01	ci right 1.336849e-01	k: 1270	n:10000
PRKD1   10000 perm   2 sec   (5192 perm/sec)   p_kst 1.270000e-01   p_cons 4.150000e-02   p_joint 7.800000e-02

Joint ci ratio: 1.159005e-01	ci left: 5.095625e-02	ci right 5.727417e-02	k: 1081	n:20000
Cons ci ratio: 1.168165e-01	ci left: 5.017833e-02	ci right 5.645233e-02	k: 1065	n:20000
KS ci ratio: 6.970058e-02	ci left: 1.317700e-01	ci right 1.413359e-01	k: 2730	n:20000
PRKD1   20000 perm   4 sec   (4669 perm/sec)   p_kst 1.365000e-01   p_cons 5.325000e-02   p_joint 5.405000e-02

Joint ci ratio: 8.029338e-02	ci left: 7.063723e-02	ci right 7.657900e-02	k: 2207	n:30000
Cons ci ratio: 9.531799e-02	ci left: 5.081738e-02	ci right 5.593622e-02	k: 1600	n:30000
KS ci ratio: 5.702755e-02	ci left: 1.321727e-01	ci right 1.399646e-01	k: 4081	n:30000
PRKD1   30000 perm   7 sec   (4474 perm/sec)   p_kst 1.360333e-01   p_cons 5.333333e-02   p_joint 7.356667e-02

Outputting figure to mutsig2_images.part000000000138/PRKD1.15_2811_30000_0.13603_0.053333_0.073567.png
                gene_name: PRKD1
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.077 

Current progress: 4 percent done.
PRPF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.181399e-02	ci left: 1.790063e-01	ci right 1.943767e-01	k: 1866	n:10000
Cons ci ratio: 8.609581e-02	ci left: 1.642567e-01	ci right 1.791350e-01	k: 1716	n:10000
KS ci ratio: 7.714643e-02	ci left: 1.972229e-01	ci right 2.131492e-01	k: 2051	n:10000
PRPF8   10000 perm   3 sec   (3934 perm/sec)   p_kst 2.051000e-01   p_cons 1.716000e-01   p_joint 1.866000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF8.11_7176_10000_0.2051_0.1716_0.1866.png
                gene_name: PRPF8
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 6 percent done.
PRKG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.783900e-02	ci left: 1.943656e-01	ci right 2.102082e-01	k: 2022	n:10000
Cons ci ratio: 2.513674e-02	ci left: 6.995839e-01	ci right 7.174944e-01	k: 7086	n:10000
KS ci ratio: 1.050099e-01	ci left: 1.158415e-01	ci right 1.287794e-01	k: 1222	n:10000
PRKG1   10000 perm   2 sec   (5663 perm/sec)   p_kst 1.222000e-01   p_cons 7.086000e-01   p_joint 2.022000e-01

Joint ci ratio: 5.810085e-02	ci left: 1.799857e-01	ci right 1.908060e-01	k: 3707	n:20000
Cons ci ratio: 1.794492e-02	ci left: 6.982731e-01	ci right 7.109674e-01	k: 14093	n:20000
KS ci ratio: 7.570759e-02	ci left: 1.137072e-01	ci right 1.227041e-01	k: 2363	n:20000
PRKG1   20000 perm   4 sec   (5096 perm/sec)   p_kst 1.181500e-01   p_cons 7.046500e-01   p_joint 1.853500e-01

Outputting figure to mutsig2_images.part000000000138/PRKG1.9_2403_20000_0.11815_0.70465_0.18535.png
                gene_name: PRKG1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 8 percent done.
PROKR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.404691e-02	ci left: 2.107297e-01	ci right 2.270344e-01	k: 2188	n:10000
Cons ci ratio: 3.515339e-02	ci left: 5.443933e-01	ci right 5.639751e-01	k: 5542	n:10000
KS ci ratio: 1.118413e-01	ci left: 1.032490e-01	ci right 1.155795e-01	k: 1093	n:10000
PROKR1   10000 perm   2 sec   (6170 perm/sec)   p_kst 1.093000e-01   p_cons 5.542000e-01   p_joint 2.188000e-01

Joint ci ratio: 5.399737e-02	ci left: 2.028876e-01	ci right 2.141972e-01	k: 4170	n:20000
Cons ci ratio: 2.624248e-02	ci left: 5.203523e-01	ci right 5.342398e-01	k: 10546	n:20000
KS ci ratio: 7.822483e-02	ci left: 1.071696e-01	ci right 1.159437e-01	k: 2230	n:20000
PROKR1   20000 perm   4 sec   (5412 perm/sec)   p_kst 1.115000e-01   p_cons 5.273000e-01   p_joint 2.085000e-01

Outputting figure to mutsig2_images.part000000000138/PROKR1.9_1190_20000_0.1115_0.5273_0.2085.png
                gene_name: PROKR1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 10 percent done.
PRPF4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.179607e-02	ci left: 4.580809e-01	ci right 4.777378e-01	k: 4679	n:10000
Cons ci ratio: 3.690941e-02	ci left: 5.201603e-01	ci right 5.398222e-01	k: 5300	n:10000
KS ci ratio: 5.715629e-02	ci left: 3.106623e-01	ci right 3.290427e-01	k: 3198	n:10000
PRPF4B   10000 perm   2 sec   (4742 perm/sec)   p_kst 3.198000e-01   p_cons 5.300000e-01   p_joint 4.679000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF4B.9_3084_10000_0.3198_0.53_0.4679.png
                gene_name: PRPF4B
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 12 percent done.
PRKD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.342460e-02	ci left: 2.135905e-01	ci right 2.299719e-01	k: 2217	n:10000
Cons ci ratio: 1.983124e-01	ci left: 3.386163e-02	ci right 4.141078e-02	k: 375	n:10000
KS ci ratio: 1.836104e-02	ci left: 8.124288e-01	ci right 8.275843e-01	k: 8201	n:10000
PRKD3   10000 perm   2 sec   (5305 perm/sec)   p_kst 8.201000e-01   p_cons 3.750000e-02   p_joint 2.217000e-01

Joint ci ratio: 7.002759e-02	ci left: 1.306864e-01	ci right 1.402199e-01	k: 2708	n:20000
Cons ci ratio: 1.418062e-01	ci left: 3.418499e-02	ci right 3.945078e-02	k: 735	n:20000
KS ci ratio: 1.312553e-02	ci left: 8.114185e-01	ci right 8.221892e-01	k: 16337	n:20000
PRKD3   20000 perm   4 sec   (4762 perm/sec)   p_kst 8.168500e-01   p_cons 3.675000e-02   p_joint 1.354000e-01

Joint ci ratio: 4.559181e-02	ci left: 1.931730e-01	ci right 2.022189e-01	k: 5930	n:30000
Cons ci ratio: 1.073342e-01	ci left: 4.027750e-02	ci right 4.487829e-02	k: 1276	n:30000
KS ci ratio: 9.986597e-03	ci left: 8.328047e-01	ci right 8.411966e-01	k: 25111	n:30000
PRKD3   30000 perm   7 sec   (4557 perm/sec)   p_kst 8.370333e-01   p_cons 4.253333e-02   p_joint 1.976667e-01

Joint ci ratio: 3.946820e-02	ci left: 1.939059e-01	ci right 2.017380e-01	k: 7912	n:40000
Cons ci ratio: 9.317384e-02	ci left: 4.039724e-02	ci right 4.436955e-02	k: 1694	n:40000
KS ci ratio: 9.295735e-03	ci left: 8.125453e-01	ci right 8.201587e-01	k: 32655	n:40000
PRKD3   40000 perm   9 sec   (4420 perm/sec)   p_kst 8.163750e-01   p_cons 4.235000e-02   p_joint 1.978000e-01

Outputting figure to mutsig2_images.part000000000138/PRKD3.8_2745_40000_0.81637_0.04235_0.1978.png
                gene_name: PRKD3
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 14 percent done.
PRMT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.851014e-02	ci left: 8.099906e-01	ci right 8.252239e-01	k: 8177	n:10000
Cons ci ratio: 2.243266e-02	ci left: 7.447278e-01	ci right 7.617245e-01	k: 7533	n:10000
KS ci ratio: 2.560606e-02	ci left: 6.918185e-01	ci right 7.098644e-01	k: 7009	n:10000
PRMT10   10000 perm   2 sec   (5155 perm/sec)   p_kst 7.009000e-01   p_cons 7.533000e-01   p_joint 8.177000e-01

Outputting figure to mutsig2_images.part000000000138/PRMT10.7_2586_10000_0.7009_0.7533_0.8177.png
                gene_name: PRMT10
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 16 percent done.
PROS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.384600e-01	ci left: 6.904079e-02	ci right 7.940888e-02	k: 741	n:10000
Cons ci ratio: 8.033598e-02	ci left: 1.845176e-01	ci right 2.000620e-01	k: 1922	n:10000
KS ci ratio: 1.548769e-01	ci left: 5.552036e-02	ci right 6.493785e-02	k: 601	n:10000
PROS1   10000 perm   2 sec   (5337 perm/sec)   p_kst 6.010000e-02   p_cons 1.922000e-01   p_joint 7.410000e-02

Joint ci ratio: 8.231076e-02	ci left: 9.764233e-02	ci right 1.060738e-01	k: 2036	n:20000
Cons ci ratio: 5.644373e-02	ci left: 1.887868e-01	ci right 1.998022e-01	k: 3885	n:20000
KS ci ratio: 1.077657e-01	ci left: 5.869667e-02	ci right 6.543134e-02	k: 1240	n:20000
PROS1   20000 perm   4 sec   (4803 perm/sec)   p_kst 6.200000e-02   p_cons 1.942500e-01   p_joint 1.018000e-01

Joint ci ratio: 5.670637e-02	ci left: 1.334899e-01	ci right 1.413138e-01	k: 4121	n:30000
Cons ci ratio: 4.539158e-02	ci left: 1.945609e-01	ci right 2.036308e-01	k: 5972	n:30000
KS ci ratio: 8.887230e-02	ci left: 5.818716e-02	ci right 6.363159e-02	k: 1826	n:30000
PROS1   30000 perm   7 sec   (4602 perm/sec)   p_kst 6.086667e-02   p_cons 1.990667e-01   p_joint 1.373667e-01

Outputting figure to mutsig2_images.part000000000138/PROS1.6_2091_30000_0.060867_0.19907_0.13737.png
                gene_name: PROS1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 18 percent done.
PRKD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.585788e-02	ci left: 8.524324e-01	ci right 8.661576e-01	k: 8594	n:10000
Cons ci ratio: 4.022656e-02	ci left: 4.771585e-01	ci right 4.968491e-01	k: 4870	n:10000
KS ci ratio: 1.844185e-02	ci left: 8.111081e-01	ci right 8.263058e-01	k: 8188	n:10000
PRKD2   10000 perm   2 sec   (5351 perm/sec)   p_kst 8.188000e-01   p_cons 4.870000e-01   p_joint 8.594000e-01

Outputting figure to mutsig2_images.part000000000138/PRKD2.5_2709_10000_0.8188_0.487_0.8594.png
                gene_name: PRKD2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 20 percent done.
PRKG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.515500e-02	ci left: 6.992813e-01	ci right 7.171972e-01	k: 7083	n:10000
Cons ci ratio: 3.515339e-02	ci left: 5.443933e-01	ci right 5.639751e-01	k: 5542	n:10000
KS ci ratio: 3.043901e-02	ci left: 6.142204e-01	ci right 6.333075e-01	k: 6238	n:10000
PRKG2   10000 perm   2 sec   (5765 perm/sec)   p_kst 6.238000e-01   p_cons 5.542000e-01   p_joint 7.083000e-01

Outputting figure to mutsig2_images.part000000000138/PRKG2.5_2361_10000_0.6238_0.5542_0.7083.png
                gene_name: PRKG2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 22 percent done.
PRMT8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.698613e-02	ci left: 4.006365e-01	ci right 4.200158e-01	k: 4103	n:10000
Cons ci ratio: 1.507876e-01	ci left: 5.850872e-02	ci right 6.814759e-02	k: 632	n:10000
KS ci ratio: 5.471340e-02	ci left: 3.298194e-01	ci right 3.484744e-01	k: 3391	n:10000
PRMT8   10000 perm   2 sec   (5731 perm/sec)   p_kst 3.391000e-01   p_cons 6.320000e-02   p_joint 4.103000e-01

Joint ci ratio: 4.130535e-02	ci left: 3.040407e-01	ci right 3.169145e-01	k: 6209	n:20000
Cons ci ratio: 1.080444e-01	ci left: 5.840428e-02	ci right 6.512383e-02	k: 1234	n:20000
KS ci ratio: 3.870546e-02	ci left: 3.323886e-01	ci right 3.455583e-01	k: 6779	n:20000
PRMT8   20000 perm   4 sec   (4634 perm/sec)   p_kst 3.389500e-01   p_cons 6.170000e-02   p_joint 3.104500e-01

Joint ci ratio: 4.114664e-02	ci left: 2.274646e-01	ci right 2.370540e-01	k: 6967	n:30000
Cons ci ratio: 8.780254e-02	ci left: 5.955813e-02	ci right 6.506034e-02	k: 1868	n:30000
KS ci ratio: 3.315409e-02	ci left: 3.125655e-01	ci right 3.231365e-01	k: 9535	n:30000
PRMT8   30000 perm   7 sec   (4540 perm/sec)   p_kst 3.178333e-01   p_cons 6.226667e-02   p_joint 2.322333e-01

Outputting figure to mutsig2_images.part000000000138/PRMT8.5_1225_30000_0.31783_0.062267_0.23223.png
                gene_name: PRMT8
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 24 percent done.
PROCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.829904e-02	ci left: 1.304150e-01	ci right 1.439971e-01	k: 1371	n:10000
Cons ci ratio: 1.200103e-01	ci left: 9.058624e-02	ci right 1.022501e-01	k: 963	n:10000
KS ci ratio: 5.082408e-02	ci left: 3.634102e-01	ci right 3.824638e-01	k: 3729	n:10000
PROCA1   10000 perm   2 sec   (5934 perm/sec)   p_kst 3.729000e-01   p_cons 9.630000e-02   p_joint 1.371000e-01

Joint ci ratio: 5.693519e-02	ci left: 1.861163e-01	ci right 1.970735e-01	k: 3831	n:20000
Cons ci ratio: 8.411543e-02	ci left: 9.381504e-02	ci right 1.021023e-01	k: 1958	n:20000
KS ci ratio: 3.512223e-02	ci left: 3.770027e-01	ci right 3.905311e-01	k: 7675	n:20000
PROCA1   20000 perm   4 sec   (5327 perm/sec)   p_kst 3.837500e-01   p_cons 9.790000e-02   p_joint 1.915500e-01

Outputting figure to mutsig2_images.part000000000138/PROCA1.5_1027_20000_0.38375_0.0979_0.19155.png
                gene_name: PROCA1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 25 percent done.
PRPF40A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.127910e-02	ci left: 7.640535e-01	ci right 7.805875e-01	k: 7724	n:10000
Cons ci ratio: 6.434124e-02	ci left: 2.619103e-01	ci right 2.794235e-01	k: 2706	n:10000
KS ci ratio: 1.774222e-02	ci left: 8.224919e-01	ci right 8.373154e-01	k: 8300	n:10000
PRPF40A   10000 perm   2 sec   (5097 perm/sec)   p_kst 8.300000e-01   p_cons 2.706000e-01   p_joint 7.724000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF40A.5_2897_10000_0.83_0.2706_0.7724.png
                gene_name: PRPF40A
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 27 percent done.
PRPF40B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.588110e-02	ci left: 6.872816e-01	ci right 7.054039e-01	k: 6964	n:10000
Cons ci ratio: 5.137174e-02	ci left: 3.584380e-01	ci right 3.774390e-01	k: 3679	n:10000
KS ci ratio: 2.454756e-02	ci left: 7.093708e-01	ci right 7.271019e-01	k: 7183	n:10000
PRPF40B   10000 perm   2 sec   (5332 perm/sec)   p_kst 7.183000e-01   p_cons 3.679000e-01   p_joint 6.964000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF40B.5_2716_10000_0.7183_0.3679_0.6964.png
                gene_name: PRPF40B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 29 percent done.
PRR5-ARHGAP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.682941e-02	ci left: 1.618987e-01	ci right 1.766945e-01	k: 1692	n:10000
Cons ci ratio: 7.874268e-02	ci left: 1.907209e-01	ci right 2.064550e-01	k: 1985	n:10000
KS ci ratio: 9.603921e-02	ci left: 1.358995e-01	ci right 1.497093e-01	k: 1427	n:10000
PRR5-ARHGAP8   10000 perm   2 sec   (5374 perm/sec)   p_kst 1.427000e-01   p_cons 1.985000e-01   p_joint 1.692000e-01

Outputting figure to mutsig2_images.part000000000138/PRR5-ARHGAP8.5_1728_10000_0.1427_0.1985_0.1692.png
                gene_name: PRR5-ARHGAP8
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 31 percent done.
PRKRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.623661e-02	ci left: 3.177077e-01	ci right 3.361932e-01	k: 3269	n:10000
Cons ci ratio: 6.516600e-02	ci left: 2.569630e-01	ci right 2.743737e-01	k: 2656	n:10000
KS ci ratio: 5.776603e-02	ci left: 3.060990e-01	ci right 3.244087e-01	k: 3152	n:10000
PRKRA   10000 perm   2 sec   (6427 perm/sec)   p_kst 3.152000e-01   p_cons 2.656000e-01   p_joint 3.269000e-01

Outputting figure to mutsig2_images.part000000000138/PRKRA.4_1006_10000_0.3152_0.2656_0.3269.png
                gene_name: PRKRA
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 33 percent done.
PRKRIR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.218770e-02	ci left: 3.511805e-01	ci right 3.701008e-01	k: 3606	n:10000
Cons ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
KS ci ratio: 7.400364e-02	ci left: 2.109269e-01	ci right 2.272370e-01	k: 2190	n:10000
PRKRIR   10000 perm   2 sec   (5731 perm/sec)   p_kst 2.190000e-01   p_cons 5.464000e-01   p_joint 3.606000e-01

Outputting figure to mutsig2_images.part000000000138/PRKRIR.4_2306_10000_0.219_0.5464_0.3606.png
                gene_name: PRKRIR
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 35 percent done.
PRLR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.807683e-02	ci left: 6.515256e-01	ci right 6.701806e-01	k: 6609	n:10000
Cons ci ratio: 4.049311e-02	ci left: 4.738613e-01	ci right 4.935482e-01	k: 4837	n:10000
KS ci ratio: 4.624658e-02	ci left: 4.083079e-01	ci right 4.277399e-01	k: 4180	n:10000
PRLR   10000 perm   2 sec   (5868 perm/sec)   p_kst 4.180000e-01   p_cons 4.837000e-01   p_joint 6.609000e-01

Outputting figure to mutsig2_images.part000000000138/PRLR.4_1901_10000_0.418_0.4837_0.6609.png
                gene_name: PRLR
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 37 percent done.
PROM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.073740e-01	ci left: 1.112507e-01	ci right 1.239730e-01	k: 1175	n:10000
Cons ci ratio: 1.203560e-01	ci left: 9.009981e-02	ci right 1.017368e-01	k: 958	n:10000
KS ci ratio: 9.042192e-02	ci left: 1.509997e-01	ci right 1.654000e-01	k: 1581	n:10000
PROM2   10000 perm   2 sec   (5729 perm/sec)   p_kst 1.581000e-01   p_cons 9.580000e-02   p_joint 1.175000e-01

Joint ci ratio: 8.469174e-02	ci left: 9.263781e-02	ci right 1.008798e-01	k: 1934	n:20000
Cons ci ratio: 8.628047e-02	ci left: 8.949949e-02	ci right 9.761912e-02	k: 1870	n:20000
KS ci ratio: 6.422856e-02	ci left: 1.519339e-01	ci right 1.620661e-01	k: 3139	n:20000
PROM2   20000 perm   4 sec   (5131 perm/sec)   p_kst 1.569500e-01   p_cons 9.350000e-02   p_joint 9.670000e-02

Outputting figure to mutsig2_images.part000000000138/PROM2.4_2597_20000_0.15695_0.0935_0.0967.png
                gene_name: PROM2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.10 

Current progress: 39 percent done.
PRPF18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.340334e-02	ci left: 2.136891e-01	ci right 2.300732e-01	k: 2218	n:10000
Cons ci ratio: 2.532304e-01	ci left: 2.043278e-02	ci right 2.644926e-02	k: 233	n:10000
KS ci ratio: 6.184581e-02	ci left: 2.776517e-01	ci right 2.954728e-01	k: 2865	n:10000
PRPF18   10000 perm   2 sec   (6444 perm/sec)   p_kst 2.865000e-01   p_cons 2.330000e-02   p_joint 2.218000e-01

Joint ci ratio: 7.767726e-02	ci left: 1.085455e-01	ci right 1.173674e-01	k: 2258	n:20000
Cons ci ratio: 1.820756e-01	ci left: 2.058483e-02	ci right 2.475554e-02	k: 452	n:20000
KS ci ratio: 4.410366e-02	ci left: 2.768633e-01	ci right 2.893998e-01	k: 5662	n:20000
PRPF18   20000 perm   4 sec   (5667 perm/sec)   p_kst 2.831000e-01   p_cons 2.260000e-02   p_joint 1.129000e-01

Joint ci ratio: 5.922132e-02	ci left: 1.236466e-01	ci right 1.312257e-01	k: 3822	n:30000
Cons ci ratio: 1.318969e-01	ci left: 2.671071e-02	ci right 3.051465e-02	k: 857	n:30000
KS ci ratio: 3.652746e-02	ci left: 2.723057e-01	ci right 2.824708e-01	k: 8321	n:30000
PRPF18   30000 perm   6 sec   (5396 perm/sec)   p_kst 2.773667e-01   p_cons 2.856667e-02   p_joint 1.274000e-01

Joint ci ratio: 6.347326e-02	ci left: 8.428026e-02	ci right 8.982986e-02	k: 3481	n:40000
Cons ci ratio: 1.144326e-01	ci left: 2.686684e-02	ci right 3.015209e-02	k: 1139	n:40000
KS ci ratio: 3.152952e-02	ci left: 2.743098e-01	ci right 2.831223e-01	k: 11148	n:40000
PRPF18   40000 perm   8 sec   (5226 perm/sec)   p_kst 2.787000e-01   p_cons 2.847500e-02   p_joint 8.702500e-02

Joint ci ratio: 4.809007e-02	ci left: 1.144720e-01	ci right 1.201325e-01	k: 5864	n:50000
Cons ci ratio: 1.031746e-01	ci left: 2.661043e-02	ci right 2.952471e-02	k: 1402	n:50000
KS ci ratio: 2.827153e-02	ci left: 2.737774e-01	ci right 2.816485e-01	k: 13885	n:50000
PRPF18   50000 perm   10 sec   (5090 perm/sec)   p_kst 2.777000e-01   p_cons 2.804000e-02   p_joint 1.172800e-01

Joint ci ratio: 4.541612e-02	ci left: 1.079360e-01	ci right 1.129684e-01	k: 6626	n:60000
Cons ci ratio: 9.360340e-02	ci left: 2.706907e-02	ci right 2.974347e-02	k: 1703	n:60000
KS ci ratio: 2.580419e-02	ci left: 2.741853e-01	ci right 2.813696e-01	k: 16666	n:60000
PRPF18   60000 perm   12 sec   (5001 perm/sec)   p_kst 2.777667e-01   p_cons 2.838333e-02   p_joint 1.104333e-01

Outputting figure to mutsig2_images.part000000000138/PRPF18.4_1069_60000_0.27777_0.028383_0.11043.png
                gene_name: PRPF18
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 41 percent done.
PRPF38B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.618985e-02	ci left: 2.012637e-01	ci right 2.173060e-01	k: 2092	n:10000
Cons ci ratio: 3.734750e-03	ci left: 9.890590e-01	ci right 9.928466e-01	k: 9911	n:10000
KS ci ratio: 1.350497e-01	ci left: 7.242987e-02	ci right 8.301768e-02	k: 776	n:10000
PRPF38B   10000 perm   2 sec   (5853 perm/sec)   p_kst 7.760000e-02   p_cons 9.911000e-01   p_joint 2.092000e-01

Joint ci ratio: 7.316803e-02	ci left: 1.208892e-01	ci right 1.301200e-01	k: 2509	n:20000
Cons ci ratio: 2.633785e-03	ci left: 9.896994e-01	ci right 9.923548e-01	k: 19822	n:20000
KS ci ratio: 9.755352e-02	ci left: 7.104451e-02	ci right 7.837971e-02	k: 1493	n:20000
PRPF38B   20000 perm   4 sec   (5261 perm/sec)   p_kst 7.465000e-02   p_cons 9.911000e-01   p_joint 1.254500e-01

Outputting figure to mutsig2_images.part000000000138/PRPF38B.4_1665_20000_0.07465_0.9911_0.12545.png
                gene_name: PRPF38B
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 43 percent done.
PRPF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.680273e-02	ci left: 6.721660e-01	ci right 6.905282e-01	k: 6814	n:10000
Cons ci ratio: 5.663503e-02	ci left: 3.146312e-01	ci right 3.330715e-01	k: 3238	n:10000
KS ci ratio: 8.297085e-03	ci left: 9.530476e-01	ci right 9.610834e-01	k: 9572	n:10000
PRPF4   10000 perm   2 sec   (5880 perm/sec)   p_kst 9.572000e-01   p_cons 3.238000e-01   p_joint 6.814000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF4.4_1625_10000_0.9572_0.3238_0.6814.png
                gene_name: PRPF4
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 45 percent done.
PRPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.809499e-02	ci left: 2.403508e-01	ci right 2.573957e-01	k: 2488	n:10000
Cons ci ratio: 9.943597e-02	ci left: 1.277721e-01	ci right 1.412416e-01	k: 1344	n:10000
KS ci ratio: 3.524595e-02	ci left: 5.430910e-01	ci right 5.626782e-01	k: 5529	n:10000
PRPH2   10000 perm   1 sec   (7115 perm/sec)   p_kst 5.529000e-01   p_cons 1.344000e-01   p_joint 2.488000e-01

Outputting figure to mutsig2_images.part000000000138/PRPH2.4_1053_10000_0.5529_0.1344_0.2488.png
                gene_name: PRPH2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 47 percent done.
PRPSAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.635179e-02	ci left: 3.168145e-01	ci right 3.352869e-01	k: 3260	n:10000
Cons ci ratio: 8.173326e-02	ci left: 1.793015e-01	ci right 1.946813e-01	k: 1869	n:10000
KS ci ratio: 5.709069e-02	ci left: 3.111584e-01	ci right 3.295464e-01	k: 3203	n:10000
PRPSAP1   10000 perm   2 sec   (6040 perm/sec)   p_kst 3.203000e-01   p_cons 1.869000e-01   p_joint 3.260000e-01

Outputting figure to mutsig2_images.part000000000138/PRPSAP1.4_1198_10000_0.3203_0.1869_0.326.png
                gene_name: PRPSAP1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 49 percent done.
PRR5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.672096e-02	ci left: 2.479627e-01	ci right 2.651793e-01	k: 2565	n:10000
Cons ci ratio: 8.689119e-02	ci left: 1.617022e-01	ci right 1.764911e-01	k: 1690	n:10000
KS ci ratio: 4.093336e-02	ci left: 4.684669e-01	ci right 4.881457e-01	k: 4783	n:10000
PRR5L   10000 perm   2 sec   (6480 perm/sec)   p_kst 4.783000e-01   p_cons 1.690000e-01   p_joint 2.565000e-01

Outputting figure to mutsig2_images.part000000000138/PRR5L.4_1145_10000_0.4783_0.169_0.2565.png
                gene_name: PRR5L
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 51 percent done.
PRL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.429381e-02	ci left: 5.566188e-01	ci right 5.761425e-01	k: 5664	n:10000
Cons ci ratio: 7.300181e-02	ci left: 2.155637e-01	ci right 2.319975e-01	k: 2237	n:10000
KS ci ratio: 4.051743e-02	ci left: 4.735616e-01	ci right 4.932481e-01	k: 4834	n:10000
PRL   10000 perm   1 sec   (6763 perm/sec)   p_kst 4.834000e-01   p_cons 2.237000e-01   p_joint 5.664000e-01

Outputting figure to mutsig2_images.part000000000138/PRL.3_704_10000_0.4834_0.2237_0.5664.png
                gene_name: PRL
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 53 percent done.
PRMT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.166397e-02	ci left: 1.474675e-01	ci right 1.617343e-01	k: 1545	n:10000
Cons ci ratio: 5.282739e-02	ci left: 3.456147e-01	ci right 3.644699e-01	k: 3550	n:10000
KS ci ratio: 1.309804e-01	ci left: 7.679184e-02	ci right 8.765300e-02	k: 821	n:10000
PRMT3   10000 perm   2 sec   (6010 perm/sec)   p_kst 8.210000e-02   p_cons 3.550000e-01   p_joint 1.545000e-01

Joint ci ratio: 7.935020e-02	ci left: 1.044183e-01	ci right 1.130958e-01	k: 2174	n:20000
Cons ci ratio: 3.691016e-02	ci left: 3.538911e-01	ci right 3.672494e-01	k: 7211	n:20000
KS ci ratio: 9.177018e-02	ci left: 7.975078e-02	ci right 8.747079e-02	k: 1671	n:20000
PRMT3   20000 perm   4 sec   (5379 perm/sec)   p_kst 8.355000e-02   p_cons 3.605500e-01   p_joint 1.087000e-01

Outputting figure to mutsig2_images.part000000000138/PRMT3.3_1660_20000_0.08355_0.36055_0.1087.png
                gene_name: PRMT3
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 55 percent done.
PRMT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.270362e-02	ci left: 2.721060e-01	ci right 2.898218e-01	k: 2809	n:10000
Cons ci ratio: 3.484857e-02	ci left: 5.487016e-01	ci right 5.682643e-01	k: 5585	n:10000
KS ci ratio: 9.166397e-02	ci left: 1.474675e-01	ci right 1.617343e-01	k: 1545	n:10000
PRMT7   10000 perm   2 sec   (6024 perm/sec)   p_kst 1.545000e-01   p_cons 5.585000e-01   p_joint 2.809000e-01

Outputting figure to mutsig2_images.part000000000138/PRMT7.3_2147_10000_0.1545_0.5585_0.2809.png
                gene_name: PRMT7
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 57 percent done.
PROKR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.512443e-02	ci left: 4.202683e-01	ci right 4.397725e-01	k: 4300	n:10000
Cons ci ratio: 1.268989e-02	ci left: 8.992899e-01	ci right 9.108729e-01	k: 9052	n:10000
KS ci ratio: 6.333011e-02	ci left: 2.681458e-01	ci right 2.857843e-01	k: 2769	n:10000
PROKR2   10000 perm   2 sec   (6314 perm/sec)   p_kst 2.769000e-01   p_cons 9.052000e-01   p_joint 4.300000e-01

Outputting figure to mutsig2_images.part000000000138/PROKR2.3_1163_10000_0.2769_0.9052_0.43.png
                gene_name: PROKR2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 59 percent done.
PROM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.438552e-02	ci left: 3.325008e-01	ci right 3.511914e-01	k: 3418	n:10000
Cons ci ratio: 1.410615e-02	ci left: 8.789942e-01	ci right 8.915804e-01	k: 8854	n:10000
KS ci ratio: 9.208707e-02	ci left: 1.462904e-01	ci right 1.605121e-01	k: 1533	n:10000
PROM1   10000 perm   2 sec   (5601 perm/sec)   p_kst 1.533000e-01   p_cons 8.854000e-01   p_joint 3.418000e-01

Outputting figure to mutsig2_images.part000000000138/PROM1.3_2702_10000_0.1533_0.8854_0.3418.png
                gene_name: PROM1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 61 percent done.
PROX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.572163e-02	ci left: 2.536986e-01	ci right 2.710400e-01	k: 2623	n:10000
Cons ci ratio: 3.157826e-02	ci left: 5.967448e-01	ci right 6.159932e-01	k: 6064	n:10000
KS ci ratio: 8.850220e-02	ci left: 1.566932e-01	ci right 1.713031e-01	k: 1639	n:10000
PROX1   10000 perm   2 sec   (5830 perm/sec)   p_kst 1.639000e-01   p_cons 6.064000e-01   p_joint 2.623000e-01

Outputting figure to mutsig2_images.part000000000138/PROX1.3_2230_10000_0.1639_0.6064_0.2623.png
                gene_name: PROX1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 63 percent done.
PRPF19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.850270e-02	ci left: 4.990503e-01	ci right 5.187445e-01	k: 5089	n:10000
Cons ci ratio: 1.219088e-01	ci left: 8.796014e-02	ci right 9.947780e-02	k: 936	n:10000
KS ci ratio: 4.933479e-03	ci left: 9.818827e-01	ci right 9.868293e-01	k: 9845	n:10000
PRPF19   10000 perm   2 sec   (6655 perm/sec)   p_kst 9.845000e-01   p_cons 9.360000e-02   p_joint 5.089000e-01

Joint ci ratio: 1.385306e-02	ci left: 7.945395e-01	ci right 8.056731e-01	k: 16003	n:20000
Cons ci ratio: 8.530316e-02	ci left: 9.141174e-02	ci right 9.960629e-02	k: 1909	n:20000
KS ci ratio: 3.373546e-03	ci left: 9.836931e-01	ci right 9.870637e-01	k: 19709	n:20000
PRPF19   20000 perm   3 sec   (5827 perm/sec)   p_kst 9.854500e-01   p_cons 9.545000e-02   p_joint 8.001500e-01

Outputting figure to mutsig2_images.part000000000138/PRPF19.3_1579_20000_0.98545_0.09545_0.80015.png
                gene_name: PRPF19
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.100 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 65 percent done.
PRPF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.233711e-02	ci left: 4.516917e-01	ci right 4.713307e-01	k: 4615	n:10000
Cons ci ratio: 8.971560e-02	ci left: 1.530607e-01	ci right 1.675377e-01	k: 1602	n:10000
KS ci ratio: 2.045457e-02	ci left: 7.778289e-01	ci right 7.940042e-01	k: 7860	n:10000
PRPF6   10000 perm   2 sec   (5366 perm/sec)   p_kst 7.860000e-01   p_cons 1.602000e-01   p_joint 4.615000e-01

Outputting figure to mutsig2_images.part000000000138/PRPF6.3_2910_10000_0.786_0.1602_0.4615.png
                gene_name: PRPF6
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 67 percent done.
PRR16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.926359e-02	ci left: 3.780349e-01	ci right 3.972306e-01	k: 3876	n:10000
Cons ci ratio: 5.235785e-02	ci left: 3.496895e-01	ci right 3.685926e-01	k: 3591	n:10000
KS ci ratio: 7.537082e-02	ci left: 2.048126e-01	ci right 2.209550e-01	k: 2128	n:10000
PRR16   10000 perm   2 sec   (6556 perm/sec)   p_kst 2.128000e-01   p_cons 3.591000e-01   p_joint 3.876000e-01

Outputting figure to mutsig2_images.part000000000138/PRR16.3_854_10000_0.2128_0.3591_0.3876.png
                gene_name: PRR16
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 69 percent done.
PRR23B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.006938e-01	ci left: 1.249344e-01	ci right 1.382810e-01	k: 1315	n:10000
Cons ci ratio: 8.779877e-02	ci left: 1.588536e-01	ci right 1.735414e-01	k: 1661	n:10000
KS ci ratio: 7.120058e-02	ci left: 2.242494e-01	ci right 2.409066e-01	k: 2325	n:10000
PRR23B   10000 perm   1 sec   (7036 perm/sec)   p_kst 2.325000e-01   p_cons 1.661000e-01   p_joint 1.315000e-01

Joint ci ratio: 7.370628e-02	ci left: 1.193146e-01	ci right 1.284950e-01	k: 2477	n:20000
Cons ci ratio: 6.335714e-02	ci left: 1.555361e-01	ci right 1.657628e-01	k: 3212	n:20000
KS ci ratio: 5.022032e-02	ci left: 2.276013e-01	ci right 2.393762e-01	k: 4669	n:20000
PRR23B   20000 perm   3 sec   (6162 perm/sec)   p_kst 2.334500e-01   p_cons 1.606000e-01   p_joint 1.238500e-01

Outputting figure to mutsig2_images.part000000000138/PRR23B.3_802_20000_0.23345_0.1606_0.12385.png
                gene_name: PRR23B
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 71 percent done.
PRKX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.662879e-02	ci left: 4.043224e-01	ci right 4.237277e-01	k: 4140	n:10000
Cons ci ratio: 9.059204e-02	ci left: 1.505090e-01	ci right 1.648910e-01	k: 1576	n:10000
KS ci ratio: 1.912809e-02	ci left: 7.998365e-01	ci right 8.153839e-01	k: 8077	n:10000
PRKX   10000 perm   2 sec   (6606 perm/sec)   p_kst 8.077000e-01   p_cons 1.576000e-01   p_joint 4.140000e-01

Outputting figure to mutsig2_images.part000000000138/PRKX.2_1109_10000_0.8077_0.1576_0.414.png
                gene_name: PRKX
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 73 percent done.
PRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.854123e-02	ci left: 4.985503e-01	ci right 5.182448e-01	k: 5084	n:10000
Cons ci ratio: 5.046744e-02	ci left: 3.666925e-01	ci right 3.857796e-01	k: 3762	n:10000
KS ci ratio: 4.494084e-02	ci left: 4.222622e-01	ci right 4.417774e-01	k: 4320	n:10000
PRM1   10000 perm   1 sec   (7300 perm/sec)   p_kst 4.320000e-01   p_cons 3.762000e-01   p_joint 5.084000e-01

Outputting figure to mutsig2_images.part000000000138/PRM1.2_164_10000_0.432_0.3762_0.5084.png
                gene_name: PRM1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 75 percent done.
PRM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.028360e-02	ci left: 6.166318e-01	ci right 6.356946e-01	k: 6262	n:10000
Cons ci ratio: 1.140663e-02	ci left: 9.165701e-01	ci right 9.271826e-01	k: 9220	n:10000
KS ci ratio: 6.639033e-02	ci left: 2.498415e-01	ci right 2.670994e-01	k: 2584	n:10000
PRM2   10000 perm   1 sec   (7076 perm/sec)   p_kst 2.584000e-01   p_cons 9.220000e-01   p_joint 6.262000e-01

Outputting figure to mutsig2_images.part000000000138/PRM2.2_317_10000_0.2584_0.922_0.6262.png
                gene_name: PRM2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 76 percent done.
PRNP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.584265e-03	ci left: 9.601611e-01	ci right 9.675655e-01	k: 9640	n:10000
Cons ci ratio: 8.318649e-02	ci left: 1.740876e-01	ci right 1.892983e-01	k: 1816	n:10000
KS ci ratio: 1.602146e-02	ci left: 8.498828e-01	ci right 8.637086e-01	k: 8569	n:10000
PRNP   10000 perm   1 sec   (6790 perm/sec)   p_kst 8.569000e-01   p_cons 1.816000e-01   p_joint 9.640000e-01

Outputting figure to mutsig2_images.part000000000138/PRNP.2_766_10000_0.8569_0.1816_0.964.png
                gene_name: PRNP
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 78 percent done.
PROX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.946939e-02	ci left: 4.866526e-01	ci right 5.063494e-01	k: 4965	n:10000
Cons ci ratio: 3.457387e-02	ci left: 5.526098e-01	ci right 5.721538e-01	k: 5624	n:10000
KS ci ratio: 3.764925e-02	ci left: 5.102534e-01	ci right 5.299348e-01	k: 5201	n:10000
PROX2   10000 perm   2 sec   (6211 perm/sec)   p_kst 5.201000e-01   p_cons 5.624000e-01   p_joint 4.965000e-01

Outputting figure to mutsig2_images.part000000000138/PROX2.2_1795_10000_0.5201_0.5624_0.4965.png
                gene_name: PROX2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 80 percent done.
PRPF31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.261065e-02	ci left: 4.484977e-01	ci right 4.681266e-01	k: 4583	n:10000
KS ci ratio: 1.735752e-02	ci left: 8.286969e-01	ci right 8.433068e-01	k: 8361	n:10000
PRPF31   10000 perm   2 sec   (6340 perm/sec)   p_kst 8.361000e-01   p_cons 4.583000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRPF31.2_1552_10000_0.8361_0.4583_1.png
                gene_name: PRPF31
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
PRPF38A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.039952e-01	ci left: 1.178937e-01	ci right 1.309260e-01	k: 1243	n:10000
Cons ci ratio: 1.043307e-01	ci left: 1.172096e-01	ci right 1.302105e-01	k: 1236	n:10000
KS ci ratio: 4.706387e-02	ci left: 3.998396e-01	ci right 4.192132e-01	k: 4095	n:10000
PRPF38A   10000 perm   2 sec   (6648 perm/sec)   p_kst 4.095000e-01   p_cons 1.236000e-01   p_joint 1.243000e-01

Joint ci ratio: 7.241124e-02	ci left: 1.231530e-01	ci right 1.324555e-01	k: 2555	n:20000
Cons ci ratio: 7.531074e-02	ci left: 1.147891e-01	ci right 1.238219e-01	k: 2385	n:20000
KS ci ratio: 3.309721e-02	ci left: 4.053663e-01	ci right 4.190592e-01	k: 8244	n:20000
PRPF38A   20000 perm   3 sec   (5857 perm/sec)   p_kst 4.122000e-01   p_cons 1.192500e-01   p_joint 1.277500e-01

Outputting figure to mutsig2_images.part000000000138/PRPF38A.2_979_20000_0.4122_0.11925_0.12775.png
                gene_name: PRPF38A
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 84 percent done.
PRPH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.612434e-01	ci left: 5.128492e-02	ci right 6.037601e-02	k: 557	n:10000
Cons ci ratio: 1.983124e-01	ci left: 3.386163e-02	ci right 4.141078e-02	k: 375	n:10000
KS ci ratio: 8.811689e-02	ci left: 1.578715e-01	ci right 1.725241e-01	k: 1651	n:10000
PRPH   10000 perm   2 sec   (6413 perm/sec)   p_kst 1.651000e-01   p_cons 3.750000e-02   p_joint 5.570000e-02

Joint ci ratio: 1.701545e-01	ci left: 2.364696e-02	ci right 2.809234e-02	k: 516	n:20000
Cons ci ratio: 1.409142e-01	ci left: 3.461962e-02	ci right 3.991600e-02	k: 744	n:20000
KS ci ratio: 6.294913e-02	ci left: 1.572635e-01	ci right 1.675348e-01	k: 3247	n:20000
PRPH   20000 perm   4 sec   (5670 perm/sec)   p_kst 1.623500e-01   p_cons 3.720000e-02   p_joint 2.580000e-02

Joint ci ratio: 8.509146e-02	ci left: 6.324861e-02	ci right 6.890245e-02	k: 1981	n:30000
Cons ci ratio: 1.165546e-01	ci left: 3.421187e-02	ci right 3.847853e-02	k: 1089	n:30000
KS ci ratio: 5.093074e-02	ci left: 1.606837e-01	ci right 1.691146e-01	k: 4946	n:30000
PRPH   30000 perm   6 sec   (5392 perm/sec)   p_kst 1.648667e-01   p_cons 3.630000e-02   p_joint 6.603333e-02

Joint ci ratio: 9.539950e-02	ci left: 3.856467e-02	ci right 4.245240e-02	k: 1619	n:40000
Cons ci ratio: 1.016801e-01	ci left: 3.400054e-02	ci right 3.766724e-02	k: 1432	n:40000
KS ci ratio: 4.411543e-02	ci left: 1.612010e-01	ci right 1.684978e-01	k: 6593	n:40000
PRPH   40000 perm   8 sec   (5217 perm/sec)   p_kst 1.648250e-01   p_cons 3.580000e-02   p_joint 4.047500e-02

Joint ci ratio: 1.008325e-01	ci left: 2.785867e-02	ci right 3.083631e-02	k: 1466	n:50000
Cons ci ratio: 9.156374e-02	ci left: 3.373863e-02	ci right 3.699560e-02	k: 1767	n:50000
KS ci ratio: 3.955151e-02	ci left: 1.609426e-01	ci right 1.674565e-01	k: 8209	n:50000
PRPH   50000 perm   10 sec   (5075 perm/sec)   p_kst 1.641800e-01   p_cons 3.534000e-02   p_joint 2.932000e-02

Joint ci ratio: 1.425285e-01	ci left: 1.156200e-02	ci right 1.335229e-02	k: 746	n:60000
Cons ci ratio: 8.423852e-02	ci left: 3.336407e-02	ci right 3.631448e-02	k: 2089	n:60000
KS ci ratio: 3.623535e-02	ci left: 1.602511e-01	ci right 1.661816e-01	k: 9792	n:60000
PRPH   60000 perm   12 sec   (4956 perm/sec)   p_kst 1.632000e-01   p_cons 3.481667e-02   p_joint 1.243333e-02

Joint ci ratio: 1.450305e-01	ci left: 9.579037e-03	ci right 1.109054e-02	k: 722	n:70000
Cons ci ratio: 7.883678e-02	ci left: 3.276775e-02	ci right 3.547104e-02	k: 2387	n:70000
KS ci ratio: 3.356353e-02	ci left: 1.603416e-01	ci right 1.658293e-01	k: 11415	n:70000
PRPH   70000 perm   14 sec   (4849 perm/sec)   p_kst 1.630714e-01   p_cons 3.410000e-02   p_joint 1.031429e-02

Joint ci ratio: 1.032091e-01	ci left: 1.679755e-02	ci right 1.863766e-02	k: 1416	n:80000
Cons ci ratio: 7.377511e-02	ci left: 3.282850e-02	ci right 3.535543e-02	k: 2726	n:80000
KS ci ratio: 3.135686e-02	ci left: 1.608564e-01	ci right 1.659931e-01	k: 13073	n:80000
PRPH   80000 perm   17 sec   (4746 perm/sec)   p_kst 1.634125e-01   p_cons 3.407500e-02   p_joint 1.770000e-02

Joint ci ratio: 1.725773e-01	ci left: 5.207958e-03	ci right 6.202086e-03	k: 512	n:90000
Cons ci ratio: 6.999255e-02	ci left: 3.249777e-02	ci right 3.486575e-02	k: 3030	n:90000
KS ci ratio: 2.954224e-02	ci left: 1.611996e-01	ci right 1.660443e-01	k: 14725	n:90000
PRPH   90000 perm   19 sec   (4652 perm/sec)   p_kst 1.636111e-01   p_cons 3.366667e-02   p_joint 5.688889e-03

Joint ci ratio: 1.632897e-01	ci left: 5.261971e-03	ci right 6.207045e-03	k: 572	n:100000
Cons ci ratio: 6.658288e-02	ci left: 3.238346e-02	ci right 3.462370e-02	k: 3349	n:100000
KS ci ratio: 2.802544e-02	ci left: 1.613320e-01	ci right 1.659276e-01	k: 16362	n:100000
PRPH   100000 perm   22 sec   (4563 perm/sec)   p_kst 1.636200e-01   p_cons 3.349000e-02   p_joint 5.720000e-03

Joint ci ratio: 1.554799e-01	ci left: 5.298596e-03	ci right 6.200490e-03	k: 631	n:110000
Cons ci ratio: 6.355573e-02	ci left: 3.236386e-02	ci right 3.449720e-02	k: 3676	n:110000
KS ci ratio: 2.673036e-02	ci left: 1.613460e-01	ci right 1.657263e-01	k: 17988	n:110000
PRPH   110000 perm   25 sec   (4480 perm/sec)   p_kst 1.635273e-01   p_cons 3.341818e-02   p_joint 5.736364e-03

Joint ci ratio: 1.495665e-01	ci left: 5.265823e-03	ci right 6.124997e-03	k: 682	n:120000
Cons ci ratio: 6.090714e-02	ci left: 3.234946e-02	ci right 3.438984e-02	k: 4003	n:120000
KS ci ratio: 2.563641e-02	ci left: 1.609722e-01	ci right 1.651608e-01	k: 19567	n:120000
PRPH   120000 perm   27 sec   (4402 perm/sec)   p_kst 1.630583e-01   p_cons 3.335833e-02   p_joint 5.683333e-03

Joint ci ratio: 1.301403e-01	ci left: 6.479526e-03	ci right 7.388831e-03	k: 900	n:130000
Cons ci ratio: 5.842488e-02	ci left: 3.249051e-02	ci right 3.445344e-02	k: 4350	n:130000
KS ci ratio: 2.457713e-02	ci left: 1.616464e-01	ci right 1.656763e-01	k: 21275	n:130000
PRPH   130000 perm   30 sec   (4325 perm/sec)   p_kst 1.636538e-01   p_cons 3.346154e-02   p_joint 6.923077e-03

Joint ci ratio: 1.018782e-01	ci left: 9.930876e-03	ci right 1.100383e-02	k: 1464	n:140000
Cons ci ratio: 5.610600e-02	ci left: 3.274674e-02	ci right 3.464407e-02	k: 4716	n:140000
KS ci ratio: 2.368350e-02	ci left: 1.617155e-01	ci right 1.655985e-01	k: 22911	n:140000
PRPH   140000 perm   33 sec   (4251 perm/sec)   p_kst 1.636500e-01   p_cons 3.368571e-02   p_joint 1.045714e-02

Joint ci ratio: 8.487877e-02	ci left: 1.342456e-02	ci right 1.462100e-02	k: 2102	n:150000
Cons ci ratio: 5.429216e-02	ci left: 3.267405e-02	ci right 3.450404e-02	k: 5037	n:150000
KS ci ratio: 2.291201e-02	ci left: 1.614060e-01	ci right 1.651536e-01	k: 24491	n:150000
PRPH   150000 perm   36 sec   (4181 perm/sec)   p_kst 1.632733e-01   p_cons 3.358000e-02   p_joint 1.401333e-02

Outputting figure to mutsig2_images.part000000000138/PRPH.2_1449_150000_0.16327_0.03358_0.014013.png
                gene_name: PRPH
               theta_stop: 0.085 
                    nperm: 150000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.015 

Current progress: 86 percent done.
PRPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.230716e-01	ci left: 8.640461e-02	ci right 9.783428e-02	k: 920	n:10000
KS ci ratio: 7.446075e-02	ci left: 2.088557e-01	ci right 2.251095e-01	k: 2169	n:10000
PRPS2   10000 perm   1 sec   (6918 perm/sec)   p_kst 2.169000e-01   p_cons 9.200000e-02   p_joint 1

Joint ci ratio: 1.164029e-02	ci left: 8.450768e-01	ci right 8.550212e-01	k: 17002	n:20000
Cons ci ratio: 8.887212e-02	ci left: 8.469674e-02	ci right 9.262332e-02	k: 1772	n:20000
KS ci ratio: 5.290926e-02	ci left: 2.096202e-01	ci right 2.210627e-01	k: 4306	n:20000
PRPS2   20000 perm   3 sec   (5723 perm/sec)   p_kst 2.153000e-01   p_cons 8.860000e-02   p_joint 8.501000e-01

Outputting figure to mutsig2_images.part000000000138/PRPS2.2_994_20000_0.2153_0.0886_0.8501.png
                gene_name: PRPS2
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 88 percent done.
PRPSAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.510206e-02	ci left: 8.640678e-01	ci right 8.773155e-01	k: 8708	n:10000
KS ci ratio: 1.394590e-02	ci left: 8.813485e-01	ci right 8.938247e-01	k: 8877	n:10000
PRPSAP2   10000 perm   2 sec   (6621 perm/sec)   p_kst 8.877000e-01   p_cons 8.708000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRPSAP2.2_1150_10000_0.8877_0.8708_1.png
                gene_name: PRPSAP2
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
PRR11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
KS ci ratio: 1.385306e+00	ci left: 2.814811e-04	ci right 1.441732e-03	k: 7	n:10000
PRR11   10000 perm   1 sec   (6857 perm/sec)   p_kst 7.000000e-04   p_cons 8.370000e-02   p_joint 0

Joint ci ratio: 1.239272e+00	ci left: 2.057886e-04	ci right 8.540675e-04	k: 9	n:20000
Cons ci ratio: 8.666425e-02	ci left: 8.876415e-02	ci right 9.685468e-02	k: 1855	n:20000
KS ci ratio: 9.503118e-01	ci left: 4.573361e-04	ci right 1.298826e-03	k: 16	n:20000
PRR11   20000 perm   3 sec   (5941 perm/sec)   p_kst 8.000000e-04   p_cons 9.275000e-02   p_joint 4.500000e-04

Joint ci ratio: 5.013857e-01	ci left: 1.526547e-03	ci right 2.573657e-03	k: 60	n:30000
Cons ci ratio: 7.497950e-02	ci left: 8.036063e-02	ci right 8.665364e-02	k: 2504	n:30000
KS ci ratio: 8.354264e-01	ci left: 4.333616e-04	ci right 1.069826e-03	k: 21	n:30000
PRR11   30000 perm   5 sec   (5685 perm/sec)   p_kst 7.000000e-04   p_cons 8.346667e-02   p_joint 2.000000e-03

Joint ci ratio: 4.434141e-01	ci left: 1.519469e-03	ci right 2.405341e-03	k: 77	n:40000
Cons ci ratio: 6.507264e-02	ci left: 8.046201e-02	ci right 8.589868e-02	k: 3326	n:40000
KS ci ratio: 7.541403e-01	ci left: 4.246441e-04	ci right 9.522566e-04	k: 26	n:40000
PRR11   40000 perm   7 sec   (5521 perm/sec)   p_kst 6.500000e-04   p_cons 8.315000e-02   p_joint 1.925000e-03

Joint ci ratio: 6.356599e-01	ci left: 5.210801e-04	ci right 1.019850e-03	k: 37	n:50000
Cons ci ratio: 5.807918e-02	ci left: 8.106971e-02	ci right 8.593877e-02	k: 4174	n:50000
KS ci ratio: 6.274512e-01	ci left: 5.378756e-04	ci right 1.043012e-03	k: 38	n:50000
PRR11   50000 perm   9 sec   (5340 perm/sec)   p_kst 7.600000e-04   p_cons 8.348000e-02   p_joint 7.400000e-04

Joint ci ratio: 2.753433e-01	ci left: 2.903486e-03	ci right 3.845562e-03	k: 201	n:60000
Cons ci ratio: 5.307090e-02	ci left: 8.113369e-02	ci right 8.557338e-02	k: 5000	n:60000
KS ci ratio: 5.655722e-01	ci left: 5.756189e-04	ci right 1.041533e-03	k: 47	n:60000
PRR11   60000 perm   12 sec   (5195 perm/sec)   p_kst 7.833333e-04   p_cons 8.333333e-02   p_joint 3.350000e-03

Joint ci ratio: 2.754100e-01	ci left: 2.488626e-03	ci right 3.296313e-03	k: 201	n:70000
Cons ci ratio: 4.904480e-02	ci left: 8.157384e-02	ci right 8.568932e-02	k: 5853	n:70000
KS ci ratio: 5.190015e-01	ci left: 6.043662e-04	ci right 1.038742e-03	k: 56	n:70000
PRR11   70000 perm   14 sec   (5073 perm/sec)   p_kst 8.000000e-04   p_cons 8.361429e-02   p_joint 2.871429e-03

Joint ci ratio: 2.657441e-01	ci left: 2.352308e-03	ci right 3.084496e-03	k: 216	n:80000
Cons ci ratio: 4.318545e-02	ci left: 9.135495e-02	ci right 9.539960e-02	k: 7469	n:80000
KS ci ratio: 4.860156e-01	ci left: 6.161503e-04	ci right 1.021469e-03	k: 64	n:80000
PRR11   80000 perm   16 sec   (4960 perm/sec)   p_kst 8.000000e-04   p_cons 9.336250e-02   p_joint 2.700000e-03

Joint ci ratio: 2.796934e-01	ci left: 1.873483e-03	ci right 2.492638e-03	k: 195	n:90000
Cons ci ratio: 4.065366e-02	ci left: 9.172664e-02	ci right 9.554404e-02	k: 8426	n:90000
KS ci ratio: 4.524515e-01	ci left: 6.456747e-04	ci right 1.032116e-03	k: 74	n:90000
PRR11   90000 perm   19 sec   (4857 perm/sec)   p_kst 8.222222e-04   p_cons 9.362222e-02   p_joint 2.166667e-03

Joint ci ratio: 2.532593e-01	ci left: 2.087507e-03	ci right 2.701925e-03	k: 238	n:100000
Cons ci ratio: 3.851831e-02	ci left: 9.203944e-02	ci right 9.566416e-02	k: 9384	n:100000
KS ci ratio: 4.353769e-01	ci left: 6.343996e-04	ci right 9.955718e-04	k: 80	n:100000
PRR11   100000 perm   21 sec   (4756 perm/sec)   p_kst 8.000000e-04   p_cons 9.384000e-02   p_joint 2.380000e-03

Joint ci ratio: 2.517087e-01	ci left: 1.923259e-03	ci right 2.485322e-03	k: 241	n:110000
Cons ci ratio: 3.684505e-02	ci left: 9.157838e-02	ci right 9.502492e-02	k: 10262	n:110000
KS ci ratio: 4.153492e-01	ci left: 6.416713e-04	ci right 9.855309e-04	k: 88	n:110000
PRR11   110000 perm   24 sec   (4654 perm/sec)   p_kst 8.000000e-04   p_cons 9.329091e-02   p_joint 2.190909e-03

Joint ci ratio: 2.387376e-01	ci left: 1.974176e-03	ci right 2.516994e-03	k: 268	n:120000
Cons ci ratio: 3.530951e-02	ci left: 9.149471e-02	ci right 9.479165e-02	k: 11176	n:120000
KS ci ratio: 3.958164e-01	ci left: 6.555513e-04	ci right 9.860105e-04	k: 97	n:120000
PRR11   120000 perm   26 sec   (4562 perm/sec)   p_kst 8.083333e-04   p_cons 9.313333e-02   p_joint 2.233333e-03

Joint ci ratio: 2.126266e-01	ci left: 2.330481e-03	ci right 2.892072e-03	k: 338	n:130000
Cons ci ratio: 3.397912e-02	ci left: 9.128906e-02	ci right 9.445220e-02	k: 12072	n:130000
KS ci ratio: 3.842324e-01	ci left: 6.467518e-04	ci right 9.608225e-04	k: 103	n:130000
PRR11   130000 perm   29 sec   (4482 perm/sec)   p_kst 7.923077e-04   p_cons 9.286154e-02   p_joint 2.600000e-03

Joint ci ratio: 2.049138e-01	ci left: 2.340027e-03	ci right 2.880902e-03	k: 364	n:140000
Cons ci ratio: 3.284862e-02	ci left: 9.080995e-02	ci right 9.384981e-02	k: 12925	n:140000
KS ci ratio: 3.669908e-01	ci left: 6.652448e-04	ci right 9.703291e-04	k: 113	n:140000
PRR11   140000 perm   32 sec   (4409 perm/sec)   p_kst 8.071429e-04   p_cons 9.232143e-02   p_joint 2.600000e-03

Joint ci ratio: 2.043712e-01	ci left: 2.196658e-03	ci right 2.702881e-03	k: 366	n:150000
Cons ci ratio: 3.176168e-02	ci left: 9.072063e-02	ci right 9.365516e-02	k: 13827	n:150000
KS ci ratio: 3.607221e-01	ci left: 6.451226e-04	ci right 9.347372e-04	k: 117	n:150000
PRR11   150000 perm   35 sec   (4335 perm/sec)   p_kst 7.800000e-04   p_cons 9.218000e-02   p_joint 2.440000e-03

Joint ci ratio: 1.962467e-01	ci left: 2.243408e-03	ci right 2.737396e-03	k: 397	n:160000
Cons ci ratio: 3.076216e-02	ci left: 9.071842e-02	ci right 9.355888e-02	k: 14741	n:160000
KS ci ratio: 3.423507e-01	ci left: 6.788849e-04	ci right 9.647043e-04	k: 130	n:160000
PRR11   160000 perm   38 sec   (4264 perm/sec)   p_kst 8.125000e-04   p_cons 9.213125e-02   p_joint 2.481250e-03

Joint ci ratio: 1.962611e-01	ci left: 2.111428e-03	ci right 2.576392e-03	k: 397	n:170000
Cons ci ratio: 2.989772e-02	ci left: 9.046067e-02	ci right 9.321209e-02	k: 15611	n:170000
KS ci ratio: 3.347722e-01	ci left: 6.712440e-04	ci right 9.462412e-04	k: 136	n:170000
PRR11   170000 perm   40 sec   (4200 perm/sec)   p_kst 8.000000e-04   p_cons 9.182941e-02   p_joint 2.335294e-03

Joint ci ratio: 2.030318e-01	ci left: 1.856875e-03	ci right 2.281640e-03	k: 371	n:180000
Cons ci ratio: 2.908478e-02	ci left: 9.033192e-02	ci right 9.300347e-02	k: 16499	n:180000
KS ci ratio: 3.276757e-01	ci left: 6.645140e-04	ci right 9.297682e-04	k: 142	n:180000
PRR11   180000 perm   44 sec   (4136 perm/sec)   p_kst 7.888889e-04   p_cons 9.166111e-02   p_joint 2.061111e-03

Joint ci ratio: 1.860271e-01	ci left: 2.114689e-03	ci right 2.553348e-03	k: 442	n:190000
Cons ci ratio: 2.828283e-02	ci left: 9.052097e-02	ci right 9.312308e-02	k: 17445	n:190000
KS ci ratio: 3.157537e-01	ci left: 6.827620e-04	ci right 9.433842e-04	k: 153	n:190000
PRR11   190000 perm   47 sec   (4076 perm/sec)   p_kst 8.052632e-04   p_cons 9.181579e-02   p_joint 2.326316e-03

Joint ci ratio: 1.922250e-01	ci left: 1.875558e-03	ci right 2.279092e-03	k: 414	n:200000
Cons ci ratio: 2.759998e-02	ci left: 9.035412e-02	ci right 9.288773e-02	k: 18323	n:200000
KS ci ratio: 3.050449e-01	ci left: 6.993423e-04	ci right 9.554830e-04	k: 164	n:200000
PRR11   200000 perm   50 sec   (4017 perm/sec)   p_kst 8.200000e-04   p_cons 9.161500e-02   p_joint 2.070000e-03

Joint ci ratio: 1.892867e-01	ci left: 1.845192e-03	ci right 2.235425e-03	k: 427	n:210000
Cons ci ratio: 2.691189e-02	ci left: 9.052571e-02	ci right 9.299986e-02	k: 19269	n:210000
KS ci ratio: 2.953566e-01	ci left: 7.144782e-04	ci right 9.662961e-04	k: 175	n:210000
PRR11   210000 perm   53 sec   (3959 perm/sec)   p_kst 8.333333e-04   p_cons 9.175714e-02   p_joint 2.033333e-03

Joint ci ratio: 1.886343e-01	ci left: 1.774304e-03	ci right 2.148104e-03	k: 430	n:220000
Cons ci ratio: 2.631369e-02	ci left: 9.042485e-02	ci right 9.284047e-02	k: 20158	n:220000
KS ci ratio: 2.857726e-01	ci left: 7.325743e-04	ci right 9.808809e-04	k: 187	n:220000
PRR11   220000 perm   56 sec   (3899 perm/sec)   p_kst 8.500000e-04   p_cons 9.162727e-02   p_joint 1.954545e-03

Joint ci ratio: 1.804386e-01	ci left: 1.863051e-03	ci right 2.236633e-03	k: 470	n:230000
Cons ci ratio: 2.574695e-02	ci left: 9.037655e-02	ci right 9.273811e-02	k: 21057	n:230000
KS ci ratio: 2.798801e-01	ci left: 7.330392e-04	ci right 9.754770e-04	k: 195	n:230000
PRR11   230000 perm   60 sec   (3842 perm/sec)   p_kst 8.478261e-04   p_cons 9.155217e-02   p_joint 2.043478e-03

Joint ci ratio: 1.818051e-01	ci left: 1.757571e-03	ci right 2.112964e-03	k: 463	n:240000
Cons ci ratio: 2.519511e-02	ci left: 9.046536e-02	ci right 9.277784e-02	k: 21988	n:240000
KS ci ratio: 2.743377e-01	ci left: 7.335134e-04	ci right 9.704756e-04	k: 203	n:240000
PRR11   240000 perm   63 sec   (3786 perm/sec)   p_kst 8.458333e-04   p_cons 9.161667e-02   p_joint 1.929167e-03

Joint ci ratio: 1.732329e-01	ci left: 1.866928e-03	ci right 2.224774e-03	k: 510	n:250000
Cons ci ratio: 2.470995e-02	ci left: 9.032880e-02	ci right 9.259269e-02	k: 22864	n:250000
KS ci ratio: 2.659909e-01	ci left: 7.526526e-04	ci right 9.871682e-04	k: 216	n:250000
PRR11   250000 perm   67 sec   (3734 perm/sec)   p_kst 8.640000e-04   p_cons 9.145600e-02   p_joint 2.040000e-03

Joint ci ratio: 1.685143e-01	ci left: 1.901895e-03	ci right 2.255506e-03	k: 539	n:260000
Cons ci ratio: 2.422931e-02	ci left: 9.035614e-02	ci right 9.257605e-02	k: 23780	n:260000
KS ci ratio: 2.612197e-01	ci left: 7.524407e-04	ci right 9.819979e-04	k: 224	n:260000
PRR11   260000 perm   71 sec   (3684 perm/sec)   p_kst 8.615385e-04   p_cons 9.146154e-02   p_joint 2.073077e-03

Joint ci ratio: 1.657750e-01	ci left: 1.895332e-03	ci right 2.241422e-03	k: 557	n:270000
Cons ci ratio: 2.380167e-02	ci left: 9.020135e-02	ci right 9.237780e-02	k: 24647	n:270000
KS ci ratio: 2.518737e-01	ci left: 7.834899e-04	ci right 1.012627e-03	k: 241	n:270000
PRR11   270000 perm   74 sec   (3635 perm/sec)   p_kst 8.925926e-04   p_cons 9.128519e-02   p_joint 2.062963e-03

Joint ci ratio: 1.617639e-01	ci left: 1.923545e-03	ci right 2.265463e-03	k: 585	n:280000
Cons ci ratio: 2.336367e-02	ci left: 9.028531e-02	ci right 9.242316e-02	k: 25578	n:280000
KS ci ratio: 2.473168e-01	ci left: 7.856407e-04	ci right 1.010611e-03	k: 250	n:280000
PRR11   280000 perm   78 sec   (3587 perm/sec)   p_kst 8.928571e-04   p_cons 9.135000e-02   p_joint 2.089286e-03

Joint ci ratio: 1.598674e-01	ci left: 1.903548e-03	ci right 2.237563e-03	k: 599	n:290000
Cons ci ratio: 2.295042e-02	ci left: 9.035352e-02	ci right 9.245465e-02	k: 26506	n:290000
KS ci ratio: 2.453715e-01	ci left: 7.714906e-04	ci right 9.904061e-04	k: 254	n:290000
PRR11   290000 perm   82 sec   (3539 perm/sec)   p_kst 8.758621e-04   p_cons 9.140000e-02   p_joint 2.065517e-03

Joint ci ratio: 1.573952e-01	ci left: 1.900915e-03	ci right 2.228823e-03	k: 618	n:300000
Cons ci ratio: 2.253711e-02	ci left: 9.057337e-02	ci right 9.264119e-02	k: 27481	n:300000
KS ci ratio: 2.416112e-01	ci left: 7.708140e-04	ci right 9.856832e-04	k: 262	n:300000
PRR11   300000 perm   86 sec   (3495 perm/sec)   p_kst 8.733333e-04   p_cons 9.160333e-02   p_joint 2.060000e-03

Joint ci ratio: 2.416146e-01	ci left: 7.459478e-04	ci right 9.538887e-04	k: 262	n:310000
Cons ci ratio: 2.216465e-02	ci left: 9.063492e-02	ci right 9.266950e-02	k: 28411	n:310000
KS ci ratio: 2.389025e-01	ci left: 7.641384e-04	ci right 9.744052e-04	k: 268	n:310000
PRR11   310000 perm   90 sec   (3454 perm/sec)   p_kst 8.645161e-04   p_cons 9.164839e-02   p_joint 8.451613e-04

Joint ci ratio: 2.380218e-01	ci left: 7.461348e-04	ci right 9.505790e-04	k: 270	n:320000
Cons ci ratio: 2.181251e-02	ci left: 9.067421e-02	ci right 9.267694e-02	k: 29335	n:320000
KS ci ratio: 2.358541e-01	ci left: 7.608330e-04	ci right 9.671289e-04	k: 275	n:320000
PRR11   320000 perm   94 sec   (3397 perm/sec)   p_kst 8.593750e-04   p_cons 9.167187e-02   p_joint 8.437500e-04

Joint ci ratio: 2.345847e-01	ci left: 7.463320e-04	ci right 9.474486e-04	k: 278	n:330000
Cons ci ratio: 2.147821e-02	ci left: 9.069931e-02	ci right 9.267150e-02	k: 30255	n:330000
KS ci ratio: 2.337477e-01	ci left: 7.520373e-04	ci right 9.538638e-04	k: 280	n:330000
PRR11   330000 perm   98 sec   (3360 perm/sec)   p_kst 8.484848e-04   p_cons 9.168182e-02   p_joint 8.424242e-04

Joint ci ratio: 2.312923e-01	ci left: 7.465374e-04	ci right 9.444826e-04	k: 286	n:340000
Cons ci ratio: 2.114053e-02	ci left: 9.086658e-02	ci right 9.281097e-02	k: 31224	n:340000
KS ci ratio: 2.308900e-01	ci left: 7.493084e-04	ci right 9.475935e-04	k: 287	n:340000
PRR11   340000 perm   102 sec   (3322 perm/sec)   p_kst 8.441176e-04   p_cons 9.183529e-02   p_joint 8.411765e-04

Joint ci ratio: 2.293046e-01	ci left: 7.386690e-04	ci right 9.326063e-04	k: 291	n:350000
Cons ci ratio: 2.082364e-02	ci left: 9.098186e-02	ci right 9.289919e-02	k: 32178	n:350000
KS ci ratio: 2.289126e-01	ci left: 7.413623e-04	ci right 9.356270e-04	k: 292	n:350000
PRR11   350000 perm   107 sec   (3286 perm/sec)   p_kst 8.342857e-04   p_cons 9.193714e-02   p_joint 8.314286e-04

Joint ci ratio: 2.425536e-01	ci left: 6.371209e-04	ci right 8.155187e-04	k: 260	n:360000
Cons ci ratio: 2.053013e-02	ci left: 9.101352e-02	ci right 9.290416e-02	k: 33104	n:360000
KS ci ratio: 2.243631e-01	ci left: 7.522105e-04	ci right 9.448592e-04	k: 304	n:360000
PRR11   360000 perm   111 sec   (3250 perm/sec)   p_kst 8.444444e-04   p_cons 9.195556e-02   p_joint 7.222222e-04

Joint ci ratio: 2.221891e-01	ci left: 7.471895e-04	ci right 9.364444e-04	k: 310	n:370000
Cons ci ratio: 2.025033e-02	ci left: 9.103020e-02	ci right 9.289511e-02	k: 34025	n:370000
KS ci ratio: 2.190396e-01	ci left: 7.701709e-04	ci right 9.621093e-04	k: 319	n:370000
PRR11   370000 perm   115 sec   (3215 perm/sec)   p_kst 8.621622e-04   p_cons 9.195946e-02   p_joint 8.378378e-04

Joint ci ratio: 2.211267e-01	ci left: 7.349826e-04	ci right 9.201342e-04	k: 313	n:380000
Cons ci ratio: 1.998702e-02	ci left: 9.100163e-02	ci right 9.284144e-02	k: 34929	n:380000
KS ci ratio: 2.173492e-01	ci left: 7.623417e-04	ci right 9.506670e-04	k: 324	n:380000
PRR11   380000 perm   119 sec   (3180 perm/sec)   p_kst 8.526316e-04   p_cons 9.191842e-02   p_joint 8.236842e-04

Joint ci ratio: 2.180240e-01	ci left: 7.379448e-04	ci right 9.208850e-04	k: 322	n:390000
Cons ci ratio: 1.972857e-02	ci left: 9.101808e-02	ci right 9.283415e-02	k: 35850	n:390000
KS ci ratio: 2.156973e-01	ci left: 7.549194e-04	ci right 9.398060e-04	k: 329	n:390000
PRR11   390000 perm   124 sec   (3146 perm/sec)   p_kst 8.435897e-04   p_cons 9.192308e-02   p_joint 8.256410e-04

Joint ci ratio: 1.356783e-01	ci left: 1.941180e-03	ci right 2.226110e-03	k: 832	n:400000
Cons ci ratio: 1.946562e-02	ci left: 9.115580e-02	ci right 9.295011e-02	k: 36820	n:400000
KS ci ratio: 2.112611e-01	ci left: 7.691760e-04	ci right 9.531784e-04	k: 343	n:400000
PRR11   400000 perm   129 sec   (3113 perm/sec)   p_kst 8.575000e-04   p_cons 9.205000e-02   p_joint 2.080000e-03

Joint ci ratio: 1.337645e-01	ci left: 1.950399e-03	ci right 2.232322e-03	k: 856	n:410000
Cons ci ratio: 1.921962e-02	ci left: 9.122868e-02	ci right 9.300148e-02	k: 37766	n:410000
KS ci ratio: 2.085505e-01	ci left: 7.712131e-04	ci right 9.530335e-04	k: 352	n:410000
PRR11   410000 perm   134 sec   (3064 perm/sec)   p_kst 8.585366e-04   p_cons 9.211220e-02   p_joint 2.087805e-03

Joint ci ratio: 1.323062e-01	ci left: 1.947693e-03	ci right 2.225915e-03	k: 875	n:420000
Cons ci ratio: 1.898975e-02	ci left: 9.123658e-02	ci right 9.298810e-02	k: 38686	n:420000
KS ci ratio: 2.068010e-01	ci left: 7.663935e-04	ci right 9.453701e-04	k: 358	n:420000
PRR11   420000 perm   138 sec   (3033 perm/sec)   p_kst 8.523810e-04   p_cons 9.210952e-02   p_joint 2.083333e-03

Joint ci ratio: 1.321583e-01	ci left: 1.906892e-03	ci right 2.178957e-03	k: 877	n:430000
Cons ci ratio: 1.876976e-02	ci left: 9.122803e-02	ci right 9.295887e-02	k: 39599	n:430000
KS ci ratio: 2.050948e-01	ci left: 7.618041e-04	ci right 9.380571e-04	k: 364	n:430000
PRR11   430000 perm   143 sec   (3001 perm/sec)   p_kst 8.465116e-04   p_cons 9.209070e-02   p_joint 2.039535e-03

Joint ci ratio: 1.308977e-01	ci left: 1.900918e-03	ci right 2.169343e-03	k: 894	n:440000
Cons ci ratio: 1.856305e-02	ci left: 9.116792e-02	ci right 9.287837e-02	k: 40489	n:440000
KS ci ratio: 2.028836e-01	ci left: 7.617435e-04	ci right 9.358469e-04	k: 372	n:440000
PRR11   440000 perm   148 sec   (2966 perm/sec)   p_kst 8.454545e-04   p_cons 9.202045e-02   p_joint 2.031818e-03

Joint ci ratio: 1.964047e-01	ci left: 7.975964e-04	ci right 9.733768e-04	k: 397	n:450000
Cons ci ratio: 1.835178e-02	ci left: 9.121238e-02	ci right 9.290398e-02	k: 41425	n:450000
KS ci ratio: 2.015381e-01	ci left: 7.553641e-04	ci right 9.267236e-04	k: 377	n:450000
PRR11   450000 perm   153 sec   (2932 perm/sec)   p_kst 8.377778e-04   p_cons 9.205556e-02   p_joint 8.822222e-04

Joint ci ratio: 1.274540e-01	ci left: 1.921351e-03	ci right 2.184984e-03	k: 943	n:460000
Cons ci ratio: 1.816624e-02	ci left: 9.108398e-02	ci right 9.275594e-02	k: 42282	n:460000
KS ci ratio: 1.981584e-01	ci left: 7.657904e-04	ci right 9.362500e-04	k: 390	n:460000
PRR11   460000 perm   159 sec   (2899 perm/sec)   p_kst 8.478261e-04   p_cons 9.191739e-02   p_joint 2.050000e-03

Joint ci ratio: 1.256686e-01	ci left: 1.936100e-03	ci right 2.197758e-03	k: 970	n:470000
Cons ci ratio: 1.797221e-02	ci left: 9.109039e-02	ci right 9.274443e-02	k: 43200	n:470000
KS ci ratio: 1.954280e-01	ci left: 7.717483e-04	ci right 9.408855e-04	k: 401	n:470000
PRR11   470000 perm   164 sec   (2866 perm/sec)   p_kst 8.531915e-04   p_cons 9.191489e-02   p_joint 2.063830e-03

Joint ci ratio: 1.002212e-01	ci left: 3.017813e-03	ci right 3.338231e-03	k: 1524	n:480000
Cons ci ratio: 1.778561e-02	ci left: 9.108418e-02	ci right 9.272075e-02	k: 44112	n:480000
KS ci ratio: 1.932763e-01	ci left: 7.735080e-04	ci right 9.409448e-04	k: 410	n:480000
PRR11   480000 perm   169 sec   (2833 perm/sec)   p_kst 8.541667e-04   p_cons 9.190000e-02   p_joint 3.175000e-03

Joint ci ratio: 9.905840e-02	ci left: 3.027864e-03	ci right 3.345402e-03	k: 1560	n:490000
Cons ci ratio: 1.759781e-02	ci left: 9.114335e-02	ci right 9.276352e-02	k: 45056	n:490000
KS ci ratio: 1.914224e-01	ci left: 7.732624e-04	ci right 9.388537e-04	k: 418	n:490000
PRR11   490000 perm   175 sec   (2802 perm/sec)   p_kst 8.530612e-04   p_cons 9.195102e-02   p_joint 3.183673e-03

Joint ci ratio: 9.824418e-02	ci left: 3.018023e-03	ci right 3.331778e-03	k: 1586	n:500000
Cons ci ratio: 1.742753e-02	ci left: 9.108868e-02	ci right 9.269205e-02	k: 45944	n:500000
KS ci ratio: 1.891780e-01	ci left: 7.768445e-04	ci right 9.410281e-04	k: 428	n:500000
PRR11   500000 perm   180 sec   (2773 perm/sec)   p_kst 8.560000e-04   p_cons 9.188800e-02   p_joint 3.172000e-03

Joint ci ratio: 9.738917e-02	ci left: 3.012405e-03	ci right 3.322694e-03	k: 1614	n:510000
Cons ci ratio: 1.725783e-02	ci left: 9.107724e-02	ci right 9.266465e-02	k: 46853	n:510000
KS ci ratio: 1.863744e-01	ci left: 7.859046e-04	ci right 9.492632e-04	k: 441	n:510000
PRR11   510000 perm   186 sec   (2745 perm/sec)   p_kst 8.647059e-04   p_cons 9.186863e-02   p_joint 3.164706e-03

Joint ci ratio: 1.119137e-01	ci left: 2.222083e-03	ci right 2.487356e-03	k: 1223	n:520000
Cons ci ratio: 1.708808e-02	ci left: 9.111421e-02	ci right 9.268649e-02	k: 47787	n:520000
KS ci ratio: 1.847104e-01	ci left: 7.854611e-04	ci right 9.471065e-04	k: 449	n:520000
PRR11   520000 perm   191 sec   (2719 perm/sec)   p_kst 8.634615e-04   p_cons 9.189808e-02   p_joint 2.351923e-03

Joint ci ratio: 1.187750e-01	ci left: 1.929100e-03	ci right 2.174507e-03	k: 1086	n:530000
Cons ci ratio: 1.692974e-02	ci left: 9.108596e-02	ci right 9.264304e-02	k: 48687	n:530000
KS ci ratio: 1.836934e-01	ci left: 7.796398e-04	ci right 9.391054e-04	k: 454	n:530000
PRR11   530000 perm   197 sec   (2694 perm/sec)   p_kst 8.566038e-04   p_cons 9.186226e-02   p_joint 2.049057e-03

Joint ci ratio: 1.177505e-01	ci left: 1.927520e-03	ci right 2.170464e-03	k: 1105	n:540000
Cons ci ratio: 1.677144e-02	ci left: 9.110124e-02	ci right 9.264388e-02	k: 49610	n:540000
KS ci ratio: 1.820996e-01	ci left: 7.793386e-04	ci right 9.372069e-04	k: 462	n:540000
PRR11   540000 perm   202 sec   (2669 perm/sec)   p_kst 8.555556e-04   p_cons 9.187037e-02   p_joint 2.046296e-03

Joint ci ratio: 1.169607e-01	ci left: 1.918946e-03	ci right 2.159075e-03	k: 1120	n:550000
Cons ci ratio: 1.661749e-02	ci left: 9.111604e-02	ci right 9.264463e-02	k: 50533	n:550000
KS ci ratio: 1.805465e-01	ci left: 7.790540e-04	ci right 9.353718e-04	k: 470	n:550000
PRR11   550000 perm   208 sec   (2644 perm/sec)   p_kst 8.545455e-04   p_cons 9.187818e-02   p_joint 2.036364e-03

Joint ci ratio: 1.158802e-01	ci left: 1.921087e-03	ci right 2.159111e-03	k: 1141	n:560000
Cons ci ratio: 1.647142e-02	ci left: 9.109300e-02	ci right 9.260765e-02	k: 51435	n:560000
KS ci ratio: 1.782891e-01	ci left: 7.856088e-04	ci right 9.410583e-04	k: 482	n:560000
PRR11   560000 perm   214 sec   (2618 perm/sec)   p_kst 8.607143e-04   p_cons 9.184821e-02   p_joint 2.037500e-03

Joint ci ratio: 1.148292e-01	ci left: 1.923163e-03	ci right 2.159137e-03	k: 1162	n:570000
Cons ci ratio: 1.632380e-02	ci left: 9.112502e-02	ci right 9.262650e-02	k: 52368	n:570000
KS ci ratio: 1.768308e-01	ci left: 7.852375e-04	ci right 9.392067e-04	k: 490	n:570000
PRR11   570000 perm   220 sec   (2593 perm/sec)   p_kst 8.596491e-04   p_cons 9.187368e-02   p_joint 2.038596e-03

Joint ci ratio: 1.137581e-01	ci left: 1.926852e-03	ci right 2.160925e-03	k: 1184	n:580000
Cons ci ratio: 1.618377e-02	ci left: 9.111820e-02	ci right 9.260656e-02	k: 53279	n:580000
KS ci ratio: 1.757605e-01	ci left: 7.815872e-04	ci right 9.338146e-04	k: 496	n:580000
PRR11   580000 perm   226 sec   (2568 perm/sec)   p_kst 8.551724e-04   p_cons 9.186034e-02   p_joint 2.041379e-03

Joint ci ratio: 1.210973e-01	ci left: 1.665500e-03	ci right 1.881812e-03	k: 1045	n:590000
Cons ci ratio: 1.604776e-02	ci left: 9.110660e-02	ci right 9.258215e-02	k: 54187	n:590000
KS ci ratio: 1.740183e-01	ci left: 7.845473e-04	ci right 9.356774e-04	k: 506	n:590000
PRR11   590000 perm   232 sec   (2542 perm/sec)   p_kst 8.576271e-04   p_cons 9.184237e-02   p_joint 1.771186e-03

Joint ci ratio: 1.200686e-01	ci left: 1.666837e-03	ci right 1.881353e-03	k: 1063	n:600000
Cons ci ratio: 1.592436e-02	ci left: 9.099912e-02	ci right 9.246149e-02	k: 55037	n:600000
KS ci ratio: 1.723270e-01	ci left: 7.874159e-04	ci right 9.374710e-04	k: 516	n:600000
PRR11   600000 perm   238 sec   (2517 perm/sec)   p_kst 8.600000e-04   p_cons 9.172833e-02   p_joint 1.771667e-03

Joint ci ratio: 1.191208e-01	ci left: 1.666547e-03	ci right 1.879214e-03	k: 1080	n:610000
Cons ci ratio: 1.580096e-02	ci left: 9.092461e-02	ci right 9.237435e-02	k: 55905	n:610000
KS ci ratio: 1.713360e-01	ci left: 7.839203e-04	ci right 9.323615e-04	k: 522	n:610000
PRR11   610000 perm   245 sec   (2492 perm/sec)   p_kst 8.557377e-04   p_cons 9.164754e-02   p_joint 1.770492e-03

Joint ci ratio: 1.177661e-01	ci left: 1.678795e-03	ci right 1.890420e-03	k: 1105	n:620000
Cons ci ratio: 1.566580e-02	ci left: 9.100683e-02	ci right 9.244537e-02	k: 56869	n:620000
KS ci ratio: 1.695618e-01	ci left: 7.882617e-04	ci right 9.358213e-04	k: 533	n:620000
PRR11   620000 perm   251 sec   (2469 perm/sec)   p_kst 8.596774e-04   p_cons 9.172419e-02   p_joint 1.782258e-03

Joint ci ratio: 1.164566e-01	ci left: 1.690669e-03	ci right 1.901257e-03	k: 1130	n:630000
Cons ci ratio: 1.554590e-02	ci left: 9.095996e-02	ci right 9.238665e-02	k: 57753	n:630000
KS ci ratio: 1.684615e-01	ci left: 7.863907e-04	ci right 9.325477e-04	k: 540	n:630000
PRR11   630000 perm   257 sec   (2448 perm/sec)   p_kst 8.571429e-04   p_cons 9.167143e-02   p_joint 1.793651e-03

Joint ci ratio: 1.942452e-01	ci left: 5.741783e-04	ci right 6.991637e-04	k: 406	n:640000
Cons ci ratio: 1.541699e-02	ci left: 9.104072e-02	ci right 9.245673e-02	k: 58718	n:640000
KS ci ratio: 1.673823e-01	ci left: 7.845811e-04	ci right 9.293735e-04	k: 547	n:640000
PRR11   640000 perm   264 sec   (2427 perm/sec)   p_kst 8.546875e-04   p_cons 9.174688e-02   p_joint 6.343750e-04

Joint ci ratio: 1.930632e-01	ci left: 5.726641e-04	ci right 6.964722e-04	k: 411	n:650000
Cons ci ratio: 1.529998e-02	ci left: 9.102398e-02	ci right 9.242889e-02	k: 59621	n:650000
KS ci ratio: 1.666243e-01	ci left: 7.798813e-04	ci right 9.230892e-04	k: 552	n:650000
PRR11   650000 perm   270 sec   (2407 perm/sec)   p_kst 8.492308e-04   p_cons 9.172462e-02   p_joint 6.323077e-04

Joint ci ratio: 1.133419e-01	ci left: 1.706532e-03	ci right 1.913031e-03	k: 1193	n:660000
Cons ci ratio: 1.517511e-02	ci left: 9.112255e-02	ci right 9.251740e-02	k: 60600	n:660000
KS ci ratio: 1.645537e-01	ci left: 7.883983e-04	ci right 9.311930e-04	k: 566	n:660000
PRR11   660000 perm   276 sec   (2387 perm/sec)   p_kst 8.575758e-04   p_cons 9.181818e-02   p_joint 1.807576e-03

Joint ci ratio: 1.125902e-01	ci left: 1.704267e-03	ci right 1.909034e-03	k: 1209	n:670000
Cons ci ratio: 1.505958e-02	ci left: 9.114830e-02	ci right 9.253284e-02	k: 61532	n:670000
KS ci ratio: 1.632630e-01	ci left: 7.895130e-04	ci right 9.312779e-04	k: 575	n:670000
PRR11   670000 perm   283 sec   (2367 perm/sec)   p_kst 8.582090e-04   p_cons 9.183881e-02   p_joint 1.804478e-03

Joint ci ratio: 1.104189e-01	ci left: 1.747827e-03	ci right 1.953513e-03	k: 1257	n:680000
Cons ci ratio: 1.494612e-02	ci left: 9.117921e-02	ci right 9.255369e-02	k: 62468	n:680000
KS ci ratio: 1.620022e-01	ci left: 7.905992e-04	ci right 9.313561e-04	k: 584	n:680000
PRR11   680000 perm   290 sec   (2345 perm/sec)   p_kst 8.588235e-04   p_cons 9.186471e-02   p_joint 1.848529e-03

Joint ci ratio: 1.095943e-01	ci left: 1.749274e-03	ci right 1.953495e-03	k: 1276	n:690000
Cons ci ratio: 1.484021e-02	ci left: 9.115292e-02	ci right 9.251718e-02	k: 63365	n:690000
KS ci ratio: 1.603654e-01	ci left: 7.958312e-04	ci right 9.359502e-04	k: 596	n:690000
PRR11   690000 perm   297 sec   (2324 perm/sec)   p_kst 8.637681e-04   p_cons 9.183333e-02   p_joint 1.849275e-03

Joint ci ratio: 1.086620e-01	ci left: 1.754856e-03	ci right 1.957874e-03	k: 1298	n:700000
Cons ci ratio: 1.474132e-02	ci left: 9.107331e-02	ci right 9.242722e-02	k: 64224	n:700000
KS ci ratio: 1.591701e-01	ci left: 7.968053e-04	ci right 9.359502e-04	k: 605	n:700000
PRR11   700000 perm   304 sec   (2305 perm/sec)   p_kst 8.642857e-04   p_cons 9.174857e-02   p_joint 1.854286e-03

Joint ci ratio: 1.819218e-01	ci left: 5.940754e-04	ci right 7.142847e-04	k: 463	n:710000
Cons ci ratio: 1.463609e-02	ci left: 9.109002e-02	ci right 9.243444e-02	k: 65150	n:710000
KS ci ratio: 1.580011e-01	ci left: 7.977557e-04	ci right 9.359464e-04	k: 614	n:710000
PRR11   710000 perm   311 sec   (2286 perm/sec)   p_kst 8.647887e-04   p_cons 9.176056e-02   p_joint 6.521127e-04

Joint ci ratio: 1.761302e-01	ci left: 6.269520e-04	ci right 7.493454e-04	k: 494	n:720000
Cons ci ratio: 1.453623e-02	ci left: 9.107032e-02	ci right 9.240519e-02	k: 66050	n:720000
KS ci ratio: 1.567318e-01	ci left: 8.000178e-04	ci right 9.373825e-04	k: 624	n:720000
PRR11   720000 perm   318 sec   (2268 perm/sec)   p_kst 8.666667e-04   p_cons 9.173611e-02   p_joint 6.861111e-04

Joint ci ratio: 1.794257e-01	ci left: 5.948023e-04	ci right 7.133280e-04	k: 476	n:730000
Cons ci ratio: 1.444136e-02	ci left: 9.101705e-02	ci right 9.234236e-02	k: 66925	n:730000
KS ci ratio: 1.563576e-01	ci left: 7.930071e-04	ci right 9.288124e-04	k: 627	n:730000
PRR11   730000 perm   325 sec   (2249 perm/sec)   p_kst 8.589041e-04   p_cons 9.167808e-02   p_joint 6.520548e-04

Joint ci ratio: 9.764958e-02	ci left: 2.066839e-03	ci right 2.280331e-03	k: 1607	n:740000
Cons ci ratio: 1.434214e-02	ci left: 9.103663e-02	ci right 9.235305e-02	k: 67853	n:740000
KS ci ratio: 1.548845e-01	ci left: 7.978757e-04	ci right 9.331079e-04	k: 639	n:740000
PRR11   740000 perm   332 sec   (2231 perm/sec)   p_kst 8.635135e-04   p_cons 9.169324e-02   p_joint 2.171622e-03

Joint ci ratio: 9.713776e-02	ci left: 2.061395e-03	ci right 2.273146e-03	k: 1624	n:750000
Cons ci ratio: 1.424495e-02	ci left: 9.105573e-02	ci right 9.236343e-02	k: 68781	n:750000
KS ci ratio: 1.539255e-01	ci left: 7.974918e-04	ci right 9.317449e-04	k: 647	n:750000
PRR11   750000 perm   339 sec   (2214 perm/sec)   p_kst 8.626667e-04   p_cons 9.170800e-02   p_joint 2.165333e-03

Joint ci ratio: 8.213483e-02	ci left: 2.865395e-03	ci right 3.112102e-03	k: 2270	n:760000
Cons ci ratio: 1.415328e-02	ci left: 9.103238e-02	ci right 9.233126e-02	k: 69677	n:760000
KS ci ratio: 1.526352e-01	ci left: 8.009172e-04	ci right 9.345134e-04	k: 658	n:760000
PRR11   760000 perm   346 sec   (2197 perm/sec)   p_kst 8.657895e-04   p_cons 9.168026e-02   p_joint 2.986842e-03

Joint ci ratio: 8.156210e-02	ci left: 2.868890e-03	ci right 3.114093e-03	k: 2302	n:770000
Cons ci ratio: 1.406215e-02	ci left: 9.102391e-02	ci right 9.231423e-02	k: 70584	n:770000
KS ci ratio: 1.518311e-01	ci left: 7.992602e-04	ci right 9.318138e-04	k: 665	n:770000
PRR11   770000 perm   354 sec   (2178 perm/sec)   p_kst 8.636364e-04   p_cons 9.166753e-02   p_joint 2.989610e-03

Joint ci ratio: 9.756388e-02	ci left: 1.964594e-03	ci right 2.167337e-03	k: 1610	n:780000
Cons ci ratio: 1.396835e-02	ci left: 9.106807e-02	ci right 9.235035e-02	k: 71532	n:780000
KS ci ratio: 1.509274e-01	ci left: 7.988812e-04	ci right 9.305121e-04	k: 673	n:780000
PRR11   780000 perm   361 sec   (2159 perm/sec)   p_kst 8.628205e-04   p_cons 9.170769e-02   p_joint 2.064103e-03

Joint ci ratio: 9.693412e-02	ci left: 1.965662e-03	ci right 2.167131e-03	k: 1631	n:790000
Cons ci ratio: 1.388094e-02	ci left: 9.105689e-02	ci right 9.233092e-02	k: 72437	n:790000
KS ci ratio: 1.498200e-01	ci left: 8.009508e-04	ci right 9.318676e-04	k: 683	n:790000
PRR11   790000 perm   369 sec   (2142 perm/sec)   p_kst 8.645570e-04   p_cons 9.169241e-02   p_joint 2.064557e-03

Joint ci ratio: 9.649204e-02	ci left: 1.959387e-03	ci right 2.159246e-03	k: 1646	n:800000
Cons ci ratio: 1.379473e-02	ci left: 9.105099e-02	ci right 9.231697e-02	k: 73346	n:800000
KS ci ratio: 1.489515e-01	ci left: 8.005651e-04	ci right 9.305928e-04	k: 691	n:800000
PRR11   800000 perm   376 sec   (2126 perm/sec)   p_kst 8.637500e-04   p_cons 9.168250e-02   p_joint 2.057500e-03

Joint ci ratio: 9.605595e-02	ci left: 1.953270e-03	ci right 2.151553e-03	k: 1661	n:810000
Cons ci ratio: 1.371163e-02	ci left: 9.102681e-02	ci right 9.228476e-02	k: 74240	n:810000
KS ci ratio: 1.478866e-01	ci left: 8.025689e-04	ci right 9.319077e-04	k: 701	n:810000
PRR11   810000 perm   384 sec   (2110 perm/sec)   p_kst 8.654321e-04   p_cons 9.165432e-02   p_joint 2.050617e-03

Joint ci ratio: 9.539798e-02	ci left: 1.956827e-03	ci right 2.154034e-03	k: 1684	n:820000
Cons ci ratio: 1.363032e-02	ci left: 9.099958e-02	ci right 9.224964e-02	k: 75131	n:820000
KS ci ratio: 1.475722e-01	ci left: 7.963046e-04	ci right 9.243369e-04	k: 704	n:820000
PRR11   820000 perm   392 sec   (2093 perm/sec)   p_kst 8.585366e-04   p_cons 9.162317e-02   p_joint 2.053659e-03

Joint ci ratio: 9.489263e-02	ci left: 1.954421e-03	ci right 2.150285e-03	k: 1702	n:830000
Cons ci ratio: 1.354769e-02	ci left: 9.100667e-02	ci right 9.224919e-02	k: 76050	n:830000
KS ci ratio: 1.468451e-01	ci left: 7.948336e-04	ci right 9.219445e-04	k: 711	n:830000
PRR11   830000 perm   400 sec   (2077 perm/sec)   p_kst 8.566265e-04   p_cons 9.162651e-02   p_joint 2.050602e-03

Joint ci ratio: 9.456054e-02	ci left: 1.945101e-03	ci right 2.139311e-03	k: 1714	n:840000
Cons ci ratio: 1.346703e-02	ci left: 9.100768e-02	ci right 9.224276e-02	k: 76964	n:840000
KS ci ratio: 1.459257e-01	ci left: 7.956932e-04	ci right 9.220754e-04	k: 720	n:840000
PRR11   840000 perm   408 sec   (2061 perm/sec)   p_kst 8.571429e-04   p_cons 9.162381e-02   p_joint 2.040476e-03

Joint ci ratio: 9.393263e-02	ci left: 1.948639e-03	ci right 2.141839e-03	k: 1737	n:850000
Cons ci ratio: 1.338741e-02	ci left: 9.101338e-02	ci right 9.224117e-02	k: 77882	n:850000
KS ci ratio: 1.455230e-01	ci left: 7.908662e-04	ci right 9.161050e-04	k: 724	n:850000
PRR11   850000 perm   416 sec   (2046 perm/sec)   p_kst 8.517647e-04   p_cons 9.162588e-02   p_joint 2.043529e-03

Joint ci ratio: 9.331706e-02	ci left: 1.952098e-03	ci right 2.144304e-03	k: 1760	n:860000
Cons ci ratio: 1.330714e-02	ci left: 9.104447e-02	ci right 9.226526e-02	k: 78822	n:860000
KS ci ratio: 1.444312e-01	ci left: 7.939969e-04	ci right 9.187069e-04	k: 735	n:860000
PRR11   860000 perm   424 sec   (2031 perm/sec)   p_kst 8.546512e-04   p_cons 9.165349e-02   p_joint 2.046512e-03

Joint ci ratio: 9.260945e-02	ci left: 1.959974e-03	ci right 2.151412e-03	k: 1787	n:870000
Cons ci ratio: 1.323214e-02	ci left: 9.102673e-02	ci right 9.224036e-02	k: 79720	n:870000
KS ci ratio: 1.434598e-01	ci left: 7.959509e-04	ci right 9.200549e-04	k: 745	n:870000
PRR11   870000 perm   432 sec   (2015 perm/sec)   p_kst 8.563218e-04   p_cons 9.163218e-02   p_joint 2.054023e-03

Joint ci ratio: 9.219809e-02	ci left: 1.955463e-03	ci right 2.145566e-03	k: 1803	n:880000
Cons ci ratio: 1.315552e-02	ci left: 9.104567e-02	ci right 9.225247e-02	k: 80650	n:880000
KS ci ratio: 1.419450e-01	ci left: 8.044389e-04	ci right 9.284299e-04	k: 761	n:880000
PRR11   880000 perm   440 sec   (2000 perm/sec)   p_kst 8.647727e-04   p_cons 9.164773e-02   p_joint 2.048864e-03

Joint ci ratio: 9.295080e-02	ci left: 1.901659e-03	ci right 2.088123e-03	k: 1774	n:890000
Cons ci ratio: 1.308586e-02	ci left: 9.099251e-02	ci right 9.219217e-02	k: 81516	n:890000
KS ci ratio: 1.412058e-01	ci left: 8.040706e-04	ci right 9.273051e-04	k: 769	n:890000
PRR11   890000 perm   448 sec   (1985 perm/sec)   p_kst 8.640449e-04   p_cons 9.159101e-02   p_joint 1.993258e-03

Joint ci ratio: 9.243152e-02	ci left: 1.902236e-03	ci right 2.087659e-03	k: 1794	n:900000
Cons ci ratio: 1.301495e-02	ci left: 9.097046e-02	ci right 9.216328e-02	k: 82409	n:900000
KS ci ratio: 1.406590e-01	ci left: 8.015680e-04	ci right 9.239034e-04	k: 775	n:900000
PRR11   900000 perm   457 sec   (1970 perm/sec)   p_kst 8.611111e-04   p_cons 9.156556e-02   p_joint 1.993333e-03

Joint ci ratio: 9.192084e-02	ci left: 1.902804e-03	ci right 2.087202e-03	k: 1814	n:910000
Cons ci ratio: 1.294184e-02	ci left: 9.099164e-02	ci right 9.217799e-02	k: 83341	n:910000
KS ci ratio: 1.402983e-01	ci left: 7.970006e-04	ci right 9.183008e-04	k: 779	n:910000
PRR11   910000 perm   466 sec   (1954 perm/sec)   p_kst 8.560440e-04   p_cons 9.158352e-02   p_joint 1.993407e-03

Joint ci ratio: 9.121951e-02	ci left: 1.911860e-03	ci right 2.095646e-03	k: 1842	n:920000
Cons ci ratio: 1.287004e-02	ci left: 9.101130e-02	ci right 9.219127e-02	k: 84272	n:920000
KS ci ratio: 1.400297e-01	ci left: 7.914839e-04	ci right 9.116946e-04	k: 782	n:920000
PRR11   920000 perm   474 sec   (1939 perm/sec)   p_kst 8.500000e-04   p_cons 9.160000e-02   p_joint 2.002174e-03

Joint ci ratio: 9.075296e-02	ci left: 1.911267e-03	ci right 2.094007e-03	k: 1861	n:930000
Cons ci ratio: 1.280099e-02	ci left: 9.101018e-02	ci right 9.218376e-02	k: 85184	n:930000
KS ci ratio: 1.393198e-01	ci left: 7.912749e-04	ci right 9.107940e-04	k: 790	n:930000
PRR11   930000 perm   483 sec   (1924 perm/sec)   p_kst 8.494624e-04   p_cons 9.159570e-02   p_joint 2.001075e-03

Joint ci ratio: 9.043814e-02	ci left: 1.904451e-03	ci right 2.085874e-03	k: 1874	n:940000
Cons ci ratio: 1.273142e-02	ci left: 9.103032e-02	ci right 9.219773e-02	k: 86116	n:940000
KS ci ratio: 1.386206e-01	ci left: 7.910718e-04	ci right 9.099110e-04	k: 798	n:940000
PRR11   940000 perm   492 sec   (1910 perm/sec)   p_kst 8.489362e-04   p_cons 9.161277e-02   p_joint 1.993617e-03

Joint ci ratio: 9.007878e-02	ci left: 1.899837e-03	ci right 2.080063e-03	k: 1889	n:950000
Cons ci ratio: 1.266584e-02	ci left: 9.101226e-02	ci right 9.217339e-02	k: 87012	n:950000
KS ci ratio: 1.375062e-01	ci left: 7.959564e-04	ci right 9.144895e-04	k: 811	n:950000
PRR11   950000 perm   501 sec   (1897 perm/sec)   p_kst 8.536842e-04   p_cons 9.159158e-02   p_joint 1.988421e-03

Joint ci ratio: 8.970008e-02	ci left: 1.896339e-03	ci right 2.075437e-03	k: 1905	n:960000
Cons ci ratio: 1.259757e-02	ci left: 9.104342e-02	ci right 9.219863e-02	k: 87955	n:960000
KS ci ratio: 1.367504e-01	ci left: 7.967186e-04	ci right 9.146599e-04	k: 820	n:960000
PRR11   960000 perm   510 sec   (1883 perm/sec)   p_kst 8.541667e-04   p_cons 9.161979e-02   p_joint 1.984375e-03

Joint ci ratio: 7.275917e-02	ci left: 2.874927e-03	ci right 3.093006e-03	k: 2893	n:970000
Cons ci ratio: 1.252806e-02	ci left: 9.110479e-02	ci right 9.225435e-02	k: 88928	n:970000
KS ci ratio: 1.355175e-01	ci left: 8.034424e-04	ci right 9.212205e-04	k: 835	n:970000
PRR11   970000 perm   519 sec   (1870 perm/sec)   p_kst 8.608247e-04   p_cons 9.167835e-02   p_joint 2.982474e-03

Joint ci ratio: 8.859112e-02	ci left: 1.905526e-03	ci right 2.083152e-03	k: 1953	n:980000
Cons ci ratio: 1.246396e-02	ci left: 9.110794e-02	ci right 9.225162e-02	k: 89845	n:980000
KS ci ratio: 1.352754e-01	ci left: 7.982014e-04	ci right 9.149853e-04	k: 838	n:980000
PRR11   980000 perm   528 sec   (1856 perm/sec)   p_kst 8.551020e-04   p_cons 9.167857e-02   p_joint 1.992857e-03

Joint ci ratio: 8.794053e-02	ci left: 1.914925e-03	ci right 2.092049e-03	k: 1982	n:990000
Cons ci ratio: 1.240430e-02	ci left: 9.106470e-02	ci right 9.220233e-02	k: 90716	n:990000
KS ci ratio: 1.346351e-01	ci left: 7.979468e-04	ci right 9.140965e-04	k: 846	n:990000
PRR11   990000 perm   537 sec   (1843 perm/sec)   p_kst 8.545455e-04   p_cons 9.163232e-02   p_joint 2.002020e-03

Joint ci ratio: 8.754420e-02	ci left: 1.913381e-03	ci right 2.089524e-03	k: 2000	n:1000000
Cons ci ratio: 1.234340e-02	ci left: 9.105027e-02	ci right 9.218210e-02	k: 91615	n:1000000
KS ci ratio: 1.343186e-01	ci left: 7.938326e-04	ci right 9.090902e-04	k: 850	n:1000000
PRR11   1000000 perm   546 sec   (1831 perm/sec)   p_kst 8.500000e-04   p_cons 9.161500e-02   p_joint 2.000000e-03

Joint ci ratio: 8.785355e-02	ci left: 1.880878e-03	ci right 2.054672e-03	k: 1986	n:1010000
Cons ci ratio: 1.228077e-02	ci left: 9.107168e-02	ci right 9.219799e-02	k: 92550	n:1010000
KS ci ratio: 1.333813e-01	ci left: 7.974563e-04	ci right 9.123680e-04	k: 862	n:1010000
PRR11   1010000 perm   555 sec   (1819 perm/sec)   p_kst 8.534653e-04   p_cons 9.163366e-02   p_joint 1.966337e-03

Joint ci ratio: 7.117873e-02	ci left: 2.859156e-03	ci right 3.071133e-03	k: 3023	n:1020000
Cons ci ratio: 1.295875e-02	ci left: 8.179180e-02	ci right 8.285959e-02	k: 83971	n:1020000
KS ci ratio: 1.329202e-01	ci left: 7.953245e-04	ci right 9.095014e-04	k: 868	n:1020000
PRR11   1020000 perm   564 sec   (1807 perm/sec)   p_kst 8.509804e-04   p_cons 8.232451e-02   p_joint 2.963725e-03

Joint ci ratio: 7.077017e-02	ci left: 2.864775e-03	ci right 3.075899e-03	k: 3058	n:1030000
Cons ci ratio: 1.289480e-02	ci left: 8.180480e-02	ci right 8.286745e-02	k: 84805	n:1030000
KS ci ratio: 1.323126e-01	ci left: 7.951122e-04	ci right 9.086959e-04	k: 876	n:1030000
PRR11   1030000 perm   574 sec   (1794 perm/sec)   p_kst 8.504854e-04   p_cons 8.233495e-02   p_joint 2.968932e-03

Joint ci ratio: 7.045999e-02	ci left: 2.862732e-03	ci right 3.072743e-03	k: 3085	n:1040000
Cons ci ratio: 1.282713e-02	ci left: 8.187221e-02	ci right 8.293012e-02	k: 85696	n:1040000
KS ci ratio: 1.317878e-01	ci left: 7.939753e-04	ci right 9.069114e-04	k: 883	n:1040000
PRR11   1040000 perm   584 sec   (1782 perm/sec)   p_kst 8.490385e-04   p_cons 8.240000e-02   p_joint 2.966346e-03

Joint ci ratio: 7.013127e-02	ci left: 2.862602e-03	ci right 3.071584e-03	k: 3114	n:1050000
Cons ci ratio: 1.276518e-02	ci left: 8.188327e-02	ci right 8.293617e-02	k: 86529	n:1050000
KS ci ratio: 1.309021e-01	ci left: 7.974667e-04	ci right 9.100780e-04	k: 895	n:1050000
PRR11   1050000 perm   593 sec   (1770 perm/sec)   p_kst 8.523810e-04   p_cons 8.240857e-02   p_joint 2.965714e-03

Joint ci ratio: 6.982938e-02	ci left: 2.860622e-03	ci right 3.068524e-03	k: 3141	n:1060000
Cons ci ratio: 1.270856e-02	ci left: 8.184146e-02	ci right 8.288912e-02	k: 87306	n:1060000
KS ci ratio: 1.302495e-01	ci left: 7.981567e-04	ci right 9.102601e-04	k: 904	n:1060000
PRR11   1060000 perm   603 sec   (1759 perm/sec)   p_kst 8.528302e-04   p_cons 8.236415e-02   p_joint 2.963208e-03

Joint ci ratio: 6.941063e-02	ci left: 2.868783e-03	ci right 3.075978e-03	k: 3179	n:1070000
Cons ci ratio: 1.264768e-02	ci left: 8.186008e-02	ci right 8.290293e-02	k: 88147	n:1070000
KS ci ratio: 1.295357e-01	ci left: 7.997394e-04	ci right 9.114022e-04	k: 914	n:1070000
PRR11   1070000 perm   612 sec   (1748 perm/sec)   p_kst 8.542056e-04   p_cons 8.238037e-02   p_joint 2.971028e-03

Joint ci ratio: 6.908551e-02	ci left: 2.869517e-03	ci right 3.075755e-03	k: 3209	n:1080000
Cons ci ratio: 1.258574e-02	ci left: 8.190145e-02	ci right 8.293968e-02	k: 89013	n:1080000
KS ci ratio: 1.289033e-01	ci left: 8.003984e-04	ci right 9.115659e-04	k: 923	n:1080000
PRR11   1080000 perm   622 sec   (1738 perm/sec)   p_kst 8.546296e-04   p_cons 8.241944e-02   p_joint 2.971296e-03

Joint ci ratio: 6.876492e-02	ci left: 2.870240e-03	ci right 3.075534e-03	k: 3239	n:1090000
Cons ci ratio: 1.252667e-02	ci left: 8.191829e-02	ci right 8.295182e-02	k: 89853	n:1090000
KS ci ratio: 1.282113e-01	ci left: 8.019346e-04	ci right 9.126720e-04	k: 933	n:1090000
PRR11   1090000 perm   631 sec   (1727 perm/sec)   p_kst 8.559633e-04   p_cons 8.243394e-02   p_joint 2.971560e-03

Joint ci ratio: 6.835447e-02	ci left: 2.878994e-03	ci right 3.083637e-03	k: 3278	n:1100000
Cons ci ratio: 1.247203e-02	ci left: 8.189132e-02	ci right 8.291997e-02	k: 90645	n:1100000
KS ci ratio: 1.272608e-01	ci left: 8.069650e-04	ci right 9.175086e-04	k: 947	n:1100000
PRR11   1100000 perm   641 sec   (1716 perm/sec)   p_kst 8.609091e-04   p_cons 8.240455e-02   p_joint 2.980000e-03

Joint ci ratio: 6.796155e-02	ci left: 2.886708e-03	ci right 3.090673e-03	k: 3316	n:1110000
Cons ci ratio: 1.241661e-02	ci left: 8.188281e-02	ci right 8.290675e-02	k: 91457	n:1110000
KS ci ratio: 1.268601e-01	ci left: 8.049286e-04	ci right 9.148199e-04	k: 953	n:1110000
PRR11   1110000 perm   651 sec   (1705 perm/sec)   p_kst 8.585586e-04   p_cons 8.239369e-02   p_joint 2.987387e-03

Joint ci ratio: 6.769687e-02	ci left: 2.883755e-03	ci right 3.086686e-03	k: 3342	n:1120000
Cons ci ratio: 1.236185e-02	ci left: 8.187536e-02	ci right 8.289466e-02	k: 92270	n:1120000
KS ci ratio: 1.263315e-01	ci left: 8.046584e-04	ci right 9.140208e-04	k: 961	n:1120000
PRR11   1120000 perm   661 sec   (1694 perm/sec)   p_kst 8.580357e-04   p_cons 8.238393e-02   p_joint 2.983929e-03

Joint ci ratio: 6.731512e-02	ci left: 2.891296e-03	ci right 3.093566e-03	k: 3380	n:1130000
Cons ci ratio: 1.230587e-02	ci left: 8.189187e-02	ci right 8.290673e-02	k: 93110	n:1130000
KS ci ratio: 1.258095e-01	ci left: 8.043939e-04	ci right 9.132350e-04	k: 969	n:1130000
PRR11   1130000 perm   671 sec   (1684 perm/sec)   p_kst 8.575221e-04   p_cons 8.239823e-02   p_joint 2.991150e-03

Joint ci ratio: 6.706776e-02	ci left: 2.887495e-03	ci right 3.088728e-03	k: 3405	n:1140000
Cons ci ratio: 1.225000e-02	ci left: 8.191598e-02	ci right 8.292649e-02	k: 93959	n:1140000
KS ci ratio: 1.252939e-01	ci left: 8.041349e-04	ci right 9.124620e-04	k: 977	n:1140000
PRR11   1140000 perm   681 sec   (1673 perm/sec)   p_kst 8.570175e-04   p_cons 8.242018e-02   p_joint 2.986842e-03

Joint ci ratio: 6.671593e-02	ci left: 2.893167e-03	ci right 3.093697e-03	k: 3441	n:1150000
Cons ci ratio: 1.219622e-02	ci left: 8.192320e-02	ci right 8.292934e-02	k: 94789	n:1150000
KS ci ratio: 1.246582e-01	ci left: 8.055663e-04	ci right 9.134949e-04	k: 987	n:1150000
PRR11   1150000 perm   692 sec   (1663 perm/sec)   p_kst 8.582609e-04   p_cons 8.242522e-02   p_joint 2.992174e-03

Joint ci ratio: 6.645587e-02	ci left: 2.891114e-03	ci right 3.090691e-03	k: 3468	n:1160000
Cons ci ratio: 1.214162e-02	ci left: 8.194922e-02	ci right 8.295114e-02	k: 95641	n:1160000
KS ci ratio: 1.238458e-01	ci left: 8.094804e-04	ci right 9.171748e-04	k: 1000	n:1160000
PRR11   1160000 perm   702 sec   (1652 perm/sec)   p_kst 8.620690e-04   p_cons 8.244914e-02   p_joint 2.989655e-03

Joint ci ratio: 6.611354e-02	ci left: 2.896663e-03	ci right 3.095553e-03	k: 3504	n:1170000
Cons ci ratio: 1.209102e-02	ci left: 8.193390e-02	ci right 8.293142e-02	k: 96445	n:1170000
KS ci ratio: 1.234151e-01	ci left: 8.083597e-04	ci right 9.155036e-04	k: 1007	n:1170000
PRR11   1170000 perm   712 sec   (1643 perm/sec)   p_kst 8.606838e-04   p_cons 8.243162e-02   p_joint 2.994872e-03

Joint ci ratio: 6.582306e-02	ci left: 2.897953e-03	ci right 3.096024e-03	k: 3535	n:1180000
Cons ci ratio: 1.204260e-02	ci left: 8.189940e-02	ci right 8.289248e-02	k: 97226	n:1180000
KS ci ratio: 1.228074e-01	ci left: 8.097228e-04	ci right 9.164805e-04	k: 1017	n:1180000
PRR11   1180000 perm   722 sec   (1634 perm/sec)   p_kst 8.618644e-04   p_cons 8.239492e-02   p_joint 2.995763e-03

Joint ci ratio: 6.554560e-02	ci left: 2.898397e-03	ci right 3.095631e-03	k: 3565	n:1190000
Cons ci ratio: 1.199002e-02	ci left: 8.192499e-02	ci right 8.291402e-02	k: 98078	n:1190000
KS ci ratio: 1.222086e-01	ci left: 8.110643e-04	ci right 9.174397e-04	k: 1027	n:1190000
PRR11   1190000 perm   733 sec   (1624 perm/sec)   p_kst 8.630252e-04   p_cons 8.241849e-02   p_joint 2.995798e-03

Joint ci ratio: 6.524432e-02	ci left: 2.901294e-03	ci right 3.097784e-03	k: 3598	n:1200000
Cons ci ratio: 1.194043e-02	ci left: 8.192108e-02	ci right 8.290594e-02	k: 98895	n:1200000
KS ci ratio: 1.220309e-01	ci left: 8.067289e-04	ci right 9.123708e-04	k: 1030	n:1200000
PRR11   1200000 perm   743 sec   (1615 perm/sec)   p_kst 8.583333e-04   p_cons 8.241250e-02   p_joint 2.998333e-03

Joint ci ratio: 6.501003e-02	ci left: 2.898454e-03	ci right 3.094020e-03	k: 3624	n:1210000
Cons ci ratio: 1.189399e-02	ci left: 8.188509e-02	ci right 8.286567e-02	k: 99673	n:1210000
KS ci ratio: 1.212686e-01	ci left: 8.104787e-04	ci right 9.159010e-04	k: 1043	n:1210000
PRR11   1210000 perm   754 sec   (1606 perm/sec)   p_kst 8.619835e-04   p_cons 8.237438e-02   p_joint 2.995041e-03

Joint ci ratio: 6.473380e-02	ci left: 2.899694e-03	ci right 3.094481e-03	k: 3655	n:1220000
Cons ci ratio: 1.184583e-02	ci left: 8.187832e-02	ci right 8.285481e-02	k: 100486	n:1220000
KS ci ratio: 1.208066e-01	ci left: 8.101943e-04	ci right 9.151495e-04	k: 1051	n:1220000
PRR11   1220000 perm   764 sec   (1597 perm/sec)   p_kst 8.614754e-04   p_cons 8.236557e-02   p_joint 2.995902e-03

Joint ci ratio: 6.453132e-02	ci left: 2.894516e-03	ci right 3.088324e-03	k: 3678	n:1230000
Cons ci ratio: 1.179585e-02	ci left: 8.190247e-02	ci right 8.287511e-02	k: 101337	n:1230000
KS ci ratio: 1.201798e-01	ci left: 8.122809e-04	ci right 9.169217e-04	k: 1062	n:1230000
PRR11   1230000 perm   775 sec   (1587 perm/sec)   p_kst 8.634146e-04   p_cons 8.238780e-02   p_joint 2.990244e-03

Joint ci ratio: 6.429589e-02	ci left: 2.892596e-03	ci right 3.085543e-03	k: 3705	n:1240000
Cons ci ratio: 1.174749e-02	ci left: 8.191338e-02	ci right 8.288212e-02	k: 102172	n:1240000
KS ci ratio: 1.196742e-01	ci left: 8.127706e-04	ci right 9.170028e-04	k: 1071	n:1240000
PRR11   1240000 perm   786 sec   (1577 perm/sec)   p_kst 8.637097e-04   p_cons 8.239677e-02   p_joint 2.987903e-03

Joint ci ratio: 6.405442e-02	ci left: 2.891496e-03	ci right 3.083618e-03	k: 3733	n:1250000
Cons ci ratio: 1.170158e-02	ci left: 8.190018e-02	ci right 8.286496e-02	k: 102977	n:1250000
KS ci ratio: 1.191750e-01	ci left: 8.132534e-04	ci right 9.170818e-04	k: 1080	n:1250000
PRR11   1250000 perm   797 sec   (1568 perm/sec)   p_kst 8.640000e-04   p_cons 8.238160e-02   p_joint 2.986400e-03

Joint ci ratio: 6.372228e-02	ci left: 2.899006e-03	ci right 3.090592e-03	k: 3772	n:1260000
Cons ci ratio: 1.165657e-02	ci left: 8.188245e-02	ci right 8.284328e-02	k: 103776	n:1260000
KS ci ratio: 1.180871e-01	ci left: 8.222012e-04	ci right 9.261469e-04	k: 1100	n:1260000
PRR11   1260000 perm   808 sec   (1559 perm/sec)   p_kst 8.730159e-04   p_cons 8.236190e-02   p_joint 2.993651e-03

Joint ci ratio: 6.349557e-02	ci left: 2.897101e-03	ci right 3.087854e-03	k: 3799	n:1270000
Cons ci ratio: 1.160761e-02	ci left: 8.192311e-02	ci right 8.288037e-02	k: 104649	n:1270000
KS ci ratio: 1.175544e-01	ci left: 8.233692e-04	ci right 9.269603e-04	k: 1110	n:1270000
PRR11   1270000 perm   820 sec   (1550 perm/sec)   p_kst 8.740157e-04   p_cons 8.240079e-02   p_joint 2.991339e-03

Joint ci ratio: 6.325468e-02	ci left: 2.896764e-03	ci right 3.086746e-03	k: 3828	n:1280000
Cons ci ratio: 1.156457e-02	ci left: 8.189381e-02	ci right 8.284715e-02	k: 105433	n:1280000
KS ci ratio: 1.167685e-01	ci left: 8.283121e-04	ci right 9.317803e-04	k: 1125	n:1280000
PRR11   1280000 perm   831 sec   (1541 perm/sec)   p_kst 8.789063e-04   p_cons 8.236953e-02   p_joint 2.990625e-03

Joint ci ratio: 6.293476e-02	ci left: 2.904065e-03	ci right 3.093527e-03	k: 3867	n:1290000
Cons ci ratio: 1.152123e-02	ci left: 8.187501e-02	ci right 8.282454e-02	k: 106230	n:1290000
KS ci ratio: 1.162533e-01	ci left: 8.294171e-04	ci right 9.325349e-04	k: 1135	n:1290000
PRR11   1290000 perm   842 sec   (1533 perm/sec)   p_kst 8.798450e-04   p_cons 8.234884e-02   p_joint 2.997674e-03

Joint ci ratio: 6.267599e-02	ci left: 2.905955e-03	ci right 3.094732e-03	k: 3899	n:1300000
Cons ci ratio: 1.147499e-02	ci left: 8.190101e-02	ci right 8.284700e-02	k: 107085	n:1300000
KS ci ratio: 1.157955e-01	ci left: 8.297591e-04	ci right 9.324855e-04	k: 1144	n:1300000
PRR11   1300000 perm   853 sec   (1524 perm/sec)   p_kst 8.800000e-04   p_cons 8.237308e-02   p_joint 2.999231e-03

Joint ci ratio: 6.240446e-02	ci left: 2.909320e-03	ci right 3.097468e-03	k: 3933	n:1310000
Cons ci ratio: 1.143092e-02	ci left: 8.190531e-02	ci right 8.284769e-02	k: 107912	n:1310000
KS ci ratio: 1.155940e-01	ci left: 8.263901e-04	ci right 9.285091e-04	k: 1148	n:1310000
PRR11   1310000 perm   865 sec   (1515 perm/sec)   p_kst 8.763359e-04   p_cons 8.237557e-02   p_joint 3.002290e-03

Joint ci ratio: 6.213643e-02	ci left: 2.912637e-03	ci right 3.100161e-03	k: 3967	n:1320000
Cons ci ratio: 1.138656e-02	ci left: 8.192012e-02	ci right 8.285899e-02	k: 108753	n:1320000
KS ci ratio: 1.152935e-01	ci left: 8.245437e-04	ci right 9.261517e-04	k: 1154	n:1320000
PRR11   1320000 perm   876 sec   (1506 perm/sec)   p_kst 8.742424e-04   p_cons 8.238864e-02   p_joint 3.005303e-03

Joint ci ratio: 6.194173e-02	ci left: 2.909242e-03	ci right 3.095940e-03	k: 3992	n:1330000
Cons ci ratio: 1.134333e-02	ci left: 8.192647e-02	ci right 8.286182e-02	k: 109583	n:1330000
KS ci ratio: 1.149458e-01	ci left: 8.234557e-04	ci right 9.246028e-04	k: 1161	n:1330000
PRR11   1330000 perm   888 sec   (1498 perm/sec)   p_kst 8.729323e-04   p_cons 8.239323e-02   p_joint 3.001504e-03

Joint ci ratio: 6.171804e-02	ci left: 2.908839e-03	ci right 3.094812e-03	k: 4021	n:1340000
Cons ci ratio: 1.129874e-02	ci left: 8.195729e-02	ci right 8.288929e-02	k: 110446	n:1340000
KS ci ratio: 1.142593e-01	ci left: 8.274589e-04	ci right 9.284498e-04	k: 1175	n:1340000
PRR11   1340000 perm   900 sec   (1489 perm/sec)   p_kst 8.768657e-04   p_cons 8.242239e-02   p_joint 3.000746e-03

Joint ci ratio: 6.145113e-02	ci left: 2.912819e-03	ci right 3.098213e-03	k: 4056	n:1350000
Cons ci ratio: 1.125540e-02	ci left: 8.197806e-02	ci right 8.290670e-02	k: 111296	n:1350000
KS ci ratio: 1.138727e-01	ci left: 8.270864e-04	ci right 9.276673e-04	k: 1183	n:1350000
PRR11   1350000 perm   911 sec   (1481 perm/sec)   p_kst 8.762963e-04   p_cons 8.244148e-02   p_joint 3.004444e-03

Joint ci ratio: 6.122518e-02	ci left: 2.913121e-03	ci right 3.097829e-03	k: 4086	n:1360000
Cons ci ratio: 1.121364e-02	ci left: 8.198386e-02	ci right 8.290910e-02	k: 112126	n:1360000
KS ci ratio: 1.133473e-01	ci left: 8.288633e-04	ci right 9.291642e-04	k: 1194	n:1360000
PRR11   1360000 perm   923 sec   (1473 perm/sec)   p_kst 8.779412e-04   p_cons 8.244559e-02   p_joint 3.004412e-03

Joint ci ratio: 6.107614e-02	ci left: 2.906233e-03	ci right 3.090039e-03	k: 4106	n:1370000
Cons ci ratio: 1.117132e-02	ci left: 8.200341e-02	ci right 8.292536e-02	k: 112975	n:1370000
KS ci ratio: 1.131110e-01	ci left: 8.263595e-04	ci right 9.261350e-04	k: 1199	n:1370000
PRR11   1370000 perm   935 sec   (1466 perm/sec)   p_kst 8.751825e-04   p_cons 8.246350e-02   p_joint 2.997080e-03

Joint ci ratio: 6.083954e-02	ci left: 2.908008e-03	ci right 3.091189e-03	k: 4138	n:1380000
Cons ci ratio: 1.112947e-02	ci left: 8.202269e-02	ci right 8.294138e-02	k: 113824	n:1380000
KS ci ratio: 1.123641e-01	ci left: 8.316387e-04	ci right 9.313447e-04	k: 1215	n:1380000
PRR11   1380000 perm   947 sec   (1457 perm/sec)   p_kst 8.804348e-04   p_cons 8.248116e-02   p_joint 2.998551e-03

Joint ci ratio: 6.061296e-02	ci left: 2.909051e-03	ci right 3.091591e-03	k: 4169	n:1390000
Cons ci ratio: 1.109004e-02	ci left: 8.201515e-02	ci right 8.293047e-02	k: 114636	n:1390000
KS ci ratio: 1.119506e-01	ci left: 8.319489e-04	ci right 9.313008e-04	k: 1224	n:1390000
PRR11   1390000 perm   959 sec   (1450 perm/sec)   p_kst 8.805755e-04   p_cons 8.247194e-02   p_joint 2.999281e-03

Joint ci ratio: 6.041052e-02	ci left: 2.907969e-03	ci right 3.089811e-03	k: 4197	n:1400000
Cons ci ratio: 1.105071e-02	ci left: 8.201200e-02	ci right 8.292402e-02	k: 115454	n:1400000
KS ci ratio: 1.113611e-01	ci left: 8.350329e-04	ci right 9.341935e-04	k: 1237	n:1400000
PRR11   1400000 perm   971 sec   (1442 perm/sec)   p_kst 8.835714e-04   p_cons 8.246714e-02   p_joint 2.997857e-03

Joint ci ratio: 6.021010e-02	ci left: 2.906904e-03	ci right 3.088055e-03	k: 4225	n:1410000
Cons ci ratio: 1.101309e-02	ci left: 8.199120e-02	ci right 8.289987e-02	k: 116247	n:1410000
KS ci ratio: 1.109140e-01	ci left: 8.360057e-04	ci right 9.348572e-04	k: 1247	n:1410000
PRR11   1410000 perm   983 sec   (1435 perm/sec)   p_kst 8.843972e-04   p_cons 8.244468e-02   p_joint 2.996454e-03

Joint ci ratio: 6.001166e-02	ci left: 2.905855e-03	ci right 3.086323e-03	k: 4253	n:1420000
Cons ci ratio: 1.097513e-02	ci left: 8.198055e-02	ci right 8.288595e-02	k: 117054	n:1420000
KS ci ratio: 1.102969e-01	ci left: 8.397049e-04	ci right 9.384054e-04	k: 1261	n:1420000
PRR11   1420000 perm   994 sec   (1428 perm/sec)   p_kst 8.880282e-04   p_cons 8.243239e-02   p_joint 2.995070e-03

Joint ci ratio: 5.975223e-02	ci left: 2.911021e-03	ci right 3.091001e-03	k: 4290	n:1430000
Cons ci ratio: 1.093514e-02	ci left: 8.200353e-02	ci right 8.290586e-02	k: 117909	n:1430000
KS ci ratio: 1.099057e-01	ci left: 8.399532e-04	ci right 9.383101e-04	k: 1270	n:1430000
PRR11   1430000 perm   1007 sec   (1421 perm/sec)   p_kst 8.881119e-04   p_cons 8.245385e-02   p_joint 3.000000e-03

Joint ci ratio: 5.956518e-02	ci left: 2.909276e-03	ci right 3.088566e-03	k: 4317	n:1440000
Cons ci ratio: 1.089638e-02	ci left: 8.201511e-02	ci right 8.291435e-02	k: 118748	n:1440000
KS ci ratio: 1.095614e-01	ci left: 8.395233e-04	ci right 9.375020e-04	k: 1278	n:1440000
PRR11   1440000 perm   1019 sec   (1413 perm/sec)   p_kst 8.875000e-04   p_cons 8.246389e-02   p_joint 2.997917e-03

Joint ci ratio: 5.934565e-02	ci left: 2.910953e-03	ci right 3.089662e-03	k: 4349	n:1450000
Cons ci ratio: 1.085987e-02	ci left: 8.200108e-02	ci right 8.289714e-02	k: 119550	n:1450000
KS ci ratio: 1.092629e-01	ci left: 8.384289e-04	ci right 9.359962e-04	k: 1285	n:1450000
PRR11   1450000 perm   1032 sec   (1405 perm/sec)   p_kst 8.862069e-04   p_cons 8.244828e-02   p_joint 2.999310e-03

Joint ci ratio: 5.916916e-02	ci left: 2.908559e-03	ci right 3.086572e-03	k: 4375	n:1460000
Cons ci ratio: 1.082263e-02	ci left: 8.200229e-02	ci right 8.289526e-02	k: 120374	n:1460000
KS ci ratio: 1.089668e-01	ci left: 8.373499e-04	ci right 9.345106e-04	k: 1292	n:1460000
PRR11   1460000 perm   1045 sec   (1398 perm/sec)   p_kst 8.849315e-04   p_cons 8.244795e-02   p_joint 2.996575e-03

Joint ci ratio: 5.896738e-02	ci left: 2.908880e-03	ci right 3.086285e-03	k: 4405	n:1470000
Cons ci ratio: 1.078588e-02	ci left: 8.200212e-02	ci right 8.289204e-02	k: 121196	n:1470000
KS ci ratio: 1.086731e-01	ci left: 8.362859e-04	ci right 9.330449e-04	k: 1299	n:1470000
PRR11   1470000 perm   1057 sec   (1390 perm/sec)   p_kst 8.836735e-04   p_cons 8.244626e-02   p_joint 2.996599e-03

Joint ci ratio: 5.879424e-02	ci left: 2.906534e-03	ci right 3.083258e-03	k: 4431	n:1480000
Cons ci ratio: 1.074979e-02	ci left: 8.199792e-02	ci right 8.288480e-02	k: 122012	n:1480000
KS ci ratio: 1.082989e-01	ci left: 8.365514e-04	ci right 9.329865e-04	k: 1308	n:1480000
PRR11   1480000 perm   1070 sec   (1383 perm/sec)   p_kst 8.837838e-04   p_cons 8.244054e-02   p_joint 2.993919e-03

Joint ci ratio: 5.859626e-02	ci left: 2.906866e-03	ci right 3.082994e-03	k: 4461	n:1490000
Cons ci ratio: 1.071529e-02	ci left: 8.197637e-02	ci right 8.286015e-02	k: 122802	n:1490000
KS ci ratio: 1.079285e-01	ci left: 8.368139e-04	ci right 9.329284e-04	k: 1317	n:1490000
PRR11   1490000 perm   1083 sec   (1376 perm/sec)   p_kst 8.838926e-04   p_cons 8.241745e-02   p_joint 2.993960e-03

Joint ci ratio: 5.841331e-02	ci left: 2.905880e-03	ci right 3.081381e-03	k: 4489	n:1500000
Cons ci ratio: 1.068065e-02	ci left: 8.196176e-02	ci right 8.284252e-02	k: 123602	n:1500000
KS ci ratio: 1.076024e-01	ci left: 8.364247e-04	ci right 9.321859e-04	k: 1325	n:1500000
PRR11   1500000 perm   1095 sec   (1369 perm/sec)   p_kst 8.833333e-04   p_cons 8.240133e-02   p_joint 2.992667e-03

Joint ci ratio: 5.824499e-02	ci left: 2.903603e-03	ci right 3.078444e-03	k: 4515	n:1510000
Cons ci ratio: 1.064481e-02	ci left: 8.196916e-02	ci right 8.284702e-02	k: 124435	n:1510000
KS ci ratio: 1.072391e-01	ci left: 8.366856e-04	ci right 9.321328e-04	k: 1334	n:1510000
PRR11   1510000 perm   1108 sec   (1363 perm/sec)   p_kst 8.834437e-04   p_cons 8.240728e-02   p_joint 2.990066e-03

Joint ci ratio: 5.806529e-02	ci left: 2.902654e-03	ci right 3.076880e-03	k: 4543	n:1520000
Cons ci ratio: 1.060664e-02	ci left: 8.201452e-02	ci right 8.288970e-02	k: 125326	n:1520000
KS ci ratio: 1.069193e-01	ci left: 8.363033e-04	ci right 9.314045e-04	k: 1342	n:1520000
PRR11   1520000 perm   1122 sec   (1355 perm/sec)   p_kst 8.828947e-04   p_cons 8.245132e-02   p_joint 2.988816e-03

Joint ci ratio: 5.789996e-02	ci left: 2.900429e-03	ci right 3.074010e-03	k: 4569	n:1530000
Cons ci ratio: 1.057263e-02	ci left: 8.200584e-02	ci right 8.287810e-02	k: 126135	n:1530000
KS ci ratio: 1.066418e-01	ci left: 8.352902e-04	ci right 9.300142e-04	k: 1349	n:1530000
PRR11   1530000 perm   1134 sec   (1349 perm/sec)   p_kst 8.816993e-04   p_cons 8.244118e-02   p_joint 2.986275e-03

Joint ci ratio: 5.767941e-02	ci left: 2.903994e-03	ci right 3.077104e-03	k: 4604	n:1540000
Cons ci ratio: 1.053782e-02	ci left: 8.201346e-02	ci right 8.288291e-02	k: 126969	n:1540000
KS ci ratio: 1.064057e-01	ci left: 8.336585e-04	ci right 9.279750e-04	k: 1355	n:1540000
PRR11   1540000 perm   1148 sec   (1342 perm/sec)   p_kst 8.798701e-04   p_cons 8.244740e-02   p_joint 2.989610e-03

Joint ci ratio: 5.746136e-02	ci left: 2.907515e-03	ci right 3.080157e-03	k: 4639	n:1550000
Cons ci ratio: 1.050070e-02	ci left: 8.205897e-02	ci right 8.292582e-02	k: 127862	n:1550000
KS ci ratio: 1.059378e-01	ci left: 8.358165e-04	ci right 9.299355e-04	k: 1367	n:1550000
PRR11   1550000 perm   1160 sec   (1336 perm/sec)   p_kst 8.819355e-04   p_cons 8.249161e-02   p_joint 2.992903e-03

Joint ci ratio: 5.728265e-02	ci left: 2.907200e-03	ci right 3.079269e-03	k: 4668	n:1560000
Cons ci ratio: 1.046663e-02	ci left: 8.206552e-02	ci right 8.292962e-02	k: 128695	n:1560000
KS ci ratio: 1.056679e-01	ci left: 8.348271e-04	ci right 9.285803e-04	k: 1374	n:1560000
PRR11   1560000 perm   1174 sec   (1329 perm/sec)   p_kst 8.807692e-04   p_cons 8.249679e-02   p_joint 2.992308e-03

Joint ci ratio: 5.712999e-02	ci left: 2.904378e-03	ci right 3.075807e-03	k: 4693	n:1570000
Cons ci ratio: 1.043088e-02	ci left: 8.210123e-02	ci right 8.296273e-02	k: 129574	n:1570000
KS ci ratio: 1.053238e-01	ci left: 8.350910e-04	ci right 9.285494e-04	k: 1383	n:1570000
PRR11   1570000 perm   1187 sec   (1322 perm/sec)   p_kst 8.808917e-04   p_cons 8.253121e-02   p_joint 2.989172e-03

Joint ci ratio: 5.697250e-02	ci left: 2.902217e-03	ci right 3.073031e-03	k: 4719	n:1580000
Cons ci ratio: 1.039844e-02	ci left: 8.209356e-02	ci right 8.295228e-02	k: 130385	n:1580000
KS ci ratio: 1.051342e-01	ci left: 8.328868e-04	ci right 9.259204e-04	k: 1388	n:1580000
PRR11   1580000 perm   1201 sec   (1316 perm/sec)   p_kst 8.784810e-04   p_cons 8.252215e-02   p_joint 2.986709e-03

Joint ci ratio: 5.550604e-02	ci left: 3.040232e-03	ci right 3.214416e-03	k: 4971	n:1590000
Cons ci ratio: 1.036497e-02	ci left: 8.210543e-02	ci right 8.296150e-02	k: 131227	n:1590000
KS ci ratio: 1.048703e-01	ci left: 8.319354e-04	ci right 9.246151e-04	k: 1395	n:1590000
PRR11   1590000 perm   1214 sec   (1309 perm/sec)   p_kst 8.773585e-04   p_cons 8.253270e-02   p_joint 3.126415e-03

Joint ci ratio: 5.659005e-02	ci left: 2.905371e-03	ci right 3.075186e-03	k: 4783	n:1600000
Cons ci ratio: 1.033215e-02	ci left: 8.211218e-02	ci right 8.296559e-02	k: 132061	n:1600000
KS ci ratio: 1.045711e-01	ci left: 8.316048e-04	ci right 9.239672e-04	k: 1403	n:1600000
PRR11   1600000 perm   1228 sec   (1302 perm/sec)   p_kst 8.768750e-04   p_cons 8.253813e-02   p_joint 2.989375e-03

Joint ci ratio: 5.635477e-02	ci left: 2.911820e-03	ci right 3.081280e-03	k: 4823	n:1610000
Cons ci ratio: 1.029991e-02	ci left: 8.211512e-02	ci right 8.296588e-02	k: 132889	n:1610000
KS ci ratio: 1.039801e-01	ci left: 8.361184e-04	ci right 9.284251e-04	k: 1419	n:1610000
PRR11   1610000 perm   1242 sec   (1296 perm/sec)   p_kst 8.813665e-04   p_cons 8.253975e-02   p_joint 2.995652e-03

Joint ci ratio: 5.612239e-02	ci left: 2.918190e-03	ci right 3.087298e-03	k: 4863	n:1620000
Cons ci ratio: 1.026687e-02	ci left: 8.213405e-02	ci right 8.298226e-02	k: 133743	n:1620000
KS ci ratio: 1.037976e-01	ci left: 8.339634e-04	ci right 9.258607e-04	k: 1424	n:1620000
PRR11   1620000 perm   1256 sec   (1290 perm/sec)   p_kst 8.790123e-04   p_cons 8.255741e-02   p_joint 3.001852e-03

Joint ci ratio: 5.595012e-02	ci left: 2.918434e-03	ci right 3.087020e-03	k: 4893	n:1630000
Cons ci ratio: 1.023602e-02	ci left: 8.212520e-02	ci right 8.297076e-02	k: 134552	n:1630000
KS ci ratio: 1.035437e-01	ci left: 8.330301e-04	ci right 9.245864e-04	k: 1431	n:1630000
PRR11   1630000 perm   1270 sec   (1284 perm/sec)   p_kst 8.779141e-04   p_cons 8.254724e-02   p_joint 3.001840e-03

Joint ci ratio: 5.579647e-02	ci left: 2.916872e-03	ci right 3.084891e-03	k: 4920	n:1640000
Cons ci ratio: 1.020753e-02	ci left: 8.208544e-02	ci right 8.292823e-02	k: 135310	n:1640000
KS ci ratio: 1.033275e-01	ci left: 8.315145e-04	ci right 9.227019e-04	k: 1437	n:1640000
PRR11   1640000 perm   1284 sec   (1278 perm/sec)   p_kst 8.762195e-04   p_cons 8.250610e-02   p_joint 3.000000e-03

Joint ci ratio: 5.564972e-02	ci left: 2.914732e-03	ci right 3.082172e-03	k: 4946	n:1650000
Cons ci ratio: 1.017566e-02	ci left: 8.209999e-02	ci right 8.294027e-02	k: 136157	n:1650000
KS ci ratio: 1.031127e-01	ci left: 8.300175e-04	ci right 9.208400e-04	k: 1443	n:1650000
PRR11   1650000 perm   1297 sec   (1272 perm/sec)   p_kst 8.745455e-04   p_cons 8.251939e-02   p_joint 2.997576e-03

Joint ci ratio: 5.550972e-02	ci left: 2.912024e-03	ci right 3.078874e-03	k: 4971	n:1660000
Cons ci ratio: 1.014429e-02	ci left: 8.211135e-02	ci right 8.294914e-02	k: 136999	n:1660000
KS ci ratio: 1.027221e-01	ci left: 8.314734e-04	ci right 9.220898e-04	k: 1454	n:1660000
PRR11   1660000 perm   1311 sec   (1266 perm/sec)   p_kst 8.759036e-04   p_cons 8.252952e-02   p_joint 2.994578e-03

Joint ci ratio: 5.532082e-02	ci left: 2.914664e-03	ci right 3.081079e-03	k: 5005	n:1670000
Cons ci ratio: 1.011336e-02	ci left: 8.212019e-02	ci right 8.295551e-02	k: 137837	n:1670000
KS ci ratio: 1.024409e-01	ci left: 8.311620e-04	ci right 9.214816e-04	k: 1462	n:1670000
PRR11   1670000 perm   1325 sec   (1261 perm/sec)   p_kst 8.754491e-04   p_cons 8.253713e-02   p_joint 2.997006e-03

Joint ci ratio: 5.511191e-02	ci left: 2.919622e-03	ci right 3.085670e-03	k: 5043	n:1680000
Cons ci ratio: 1.008141e-02	ci left: 8.214853e-02	ci right 8.298148e-02	k: 138708	n:1680000
KS ci ratio: 1.020926e-01	ci left: 8.320148e-04	ci right 9.221011e-04	k: 1472	n:1680000
PRR11   1680000 perm   1340 sec   (1254 perm/sec)   p_kst 8.761905e-04   p_cons 8.256429e-02   p_joint 3.001786e-03

Joint ci ratio: 5.495961e-02	ci left: 2.918686e-03	ci right 3.084208e-03	k: 5071	n:1690000
Cons ci ratio: 1.005043e-02	ci left: 8.216650e-02	ci right 8.299706e-02	k: 139562	n:1690000
KS ci ratio: 1.015765e-01	ci left: 8.357414e-04	ci right 9.257465e-04	k: 1487	n:1690000
PRR11   1690000 perm   1354 sec   (1249 perm/sec)   p_kst 8.798817e-04   p_cons 8.258107e-02   p_joint 3.000592e-03

Joint ci ratio: 5.478702e-02	ci left: 2.920083e-03	ci right 3.085147e-03	k: 5103	n:1700000
Cons ci ratio: 1.001965e-02	ci left: 8.218544e-02	ci right 8.301363e-02	k: 140418	n:1700000
KS ci ratio: 1.013724e-01	ci left: 8.342651e-04	ci right 9.239199e-04	k: 1493	n:1700000
PRR11   1700000 perm   1368 sec   (1243 perm/sec)   p_kst 8.782353e-04   p_cons 8.259882e-02   p_joint 3.001765e-03

Joint ci ratio: 5.461071e-02	ci left: 2.922041e-03	ci right 3.086667e-03	k: 5136	n:1710000
Cons ci ratio: 9.990386e-03	ci left: 8.218549e-02	ci right 8.301125e-02	k: 141242	n:1710000
KS ci ratio: 1.010684e-01	ci left: 8.345162e-04	ci right 9.239132e-04	k: 1502	n:1710000
PRR11   1710000 perm   1382 sec   (1237 perm/sec)   p_kst 8.783626e-04   p_cons 8.259766e-02   p_joint 3.003509e-03

Joint ci ratio: 5.446781e-02	ci left: 2.920536e-03	ci right 3.084633e-03	k: 5163	n:1720000
Cons ci ratio: 9.961187e-03	ci left: 8.218844e-02	ci right 8.301180e-02	k: 142071	n:1720000
KS ci ratio: 1.009008e-01	ci left: 8.324979e-04	ci right 9.215221e-04	k: 1507	n:1720000
PRR11   1720000 perm   1397 sec   (1231 perm/sec)   p_kst 8.761628e-04   p_cons 8.259942e-02   p_joint 3.001744e-03

Joint ci ratio: 5.433652e-02	ci left: 2.917908e-03	ci right 3.081451e-03	k: 5188	n:1730000
Cons ci ratio: 9.934895e-03	ci left: 8.215099e-02	ci right 8.297179e-02	k: 142830	n:1730000
KS ci ratio: 1.005017e-01	ci left: 8.344475e-04	ci right 9.233063e-04	k: 1519	n:1730000
PRR11   1730000 perm   1412 sec   (1226 perm/sec)   p_kst 8.780347e-04   p_cons 8.256069e-02   p_joint 2.998844e-03

Joint ci ratio: 5.412814e-02	ci left: 2.923816e-03	ci right 3.087041e-03	k: 5228	n:1740000
Cons ci ratio: 9.907117e-03	ci left: 8.213978e-02	ci right 8.295816e-02	k: 143634	n:1740000
KS ci ratio: 1.001072e-01	ci left: 8.363755e-04	ci right 9.250694e-04	k: 1531	n:1740000
PRR11   1740000 perm   1426 sec   (1220 perm/sec)   p_kst 8.798851e-04   p_cons 8.254828e-02   p_joint 3.004598e-03

Joint ci ratio: 5.395809e-02	ci left: 2.925710e-03	ci right 3.088513e-03	k: 5261	n:1750000
Cons ci ratio: 9.878826e-03	ci left: 8.214010e-02	ci right 8.295614e-02	k: 144458	n:1750000
KS ci ratio: 1.000095e-01	ci left: 8.332675e-04	ci right 9.215406e-04	k: 1534	n:1750000
PRR11   1750000 perm   1441 sec   (1214 perm/sec)   p_kst 8.765714e-04   p_cons 8.254743e-02   p_joint 3.006286e-03

Joint ci ratio: 5.377946e-02	ci left: 2.928706e-03	ci right 3.091118e-03	k: 5296	n:1760000
Cons ci ratio: 9.849557e-03	ci left: 8.215913e-02	ci right 8.297292e-02	k: 145315	n:1760000
KS ci ratio: 9.955637e-02	ci left: 8.362891e-04	ci right 9.244575e-04	k: 1548	n:1760000
PRR11   1760000 perm   1456 sec   (1209 perm/sec)   p_kst 8.795455e-04   p_cons 8.256534e-02   p_joint 3.009091e-03

Outputting figure to mutsig2_images.part000000000138/PRR11.2_1119_1760000_0.00087955_0.082565_0.0030091.png
                gene_name: PRR11
               theta_stop: 0.100 
                    nperm: 1760000 
                     p_ks: 0.00088 
        ci_ks_bounds_left: 0.00084 
       ci_ks_bounds_right: 0.00092 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.0030 
     ci_joint_bounds_left: 0.0029 
    ci_joint_bounds_right: 0.0031 

Current progress: 92 percent done.
PRR12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.804254e-03	ci left: 9.364092e-01	ci right 9.457318e-01	k: 9412	n:10000
KS ci ratio: 2.348272e-02	ci left: 7.271416e-01	ci right 7.445209e-01	k: 7359	n:10000
PRR12   10000 perm   2 sec   (4786 perm/sec)   p_kst 7.359000e-01   p_cons 9.412000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRR12.2_6167_10000_0.7359_0.9412_1.png
                gene_name: PRR12
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
PRR19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.926549e-02	ci left: 1.281636e-01	ci right 1.416499e-01	k: 1348	n:10000
Cons ci ratio: 1.103741e-01	ci left: 1.057850e-01	ci right 1.182420e-01	k: 1119	n:10000
KS ci ratio: 7.058784e-02	ci left: 2.273104e-01	ci right 2.440439e-01	k: 2356	n:10000
PRR19   10000 perm   1 sec   (6863 perm/sec)   p_kst 2.356000e-01   p_cons 1.119000e-01   p_joint 1.348000e-01

Joint ci ratio: 7.723471e-02	ci left: 1.096759e-01	ci right 1.185366e-01	k: 2281	n:20000
Cons ci ratio: 7.886285e-02	ci left: 1.055973e-01	ci right 1.143165e-01	k: 2198	n:20000
KS ci ratio: 4.985827e-02	ci left: 2.301784e-01	ci right 2.419984e-01	k: 4721	n:20000
PRR19   20000 perm   3 sec   (6042 perm/sec)   p_kst 2.360500e-01   p_cons 1.099000e-01   p_joint 1.140500e-01

Outputting figure to mutsig2_images.part000000000138/PRR19.2_1079_20000_0.23605_0.1099_0.11405.png
                gene_name: PRR19
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 96 percent done.
PRR21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.685670e-01	ci left: 4.696137e-02	ci right 5.570235e-02	k: 512	n:10000
Cons ci ratio: 1.439627e-02	ci left: 8.746972e-01	ci right 8.874798e-01	k: 8812	n:10000
KS ci ratio: 7.677370e-01	ci left: 1.618501e-03	ci right 3.688296e-03	k: 25	n:10000
PRR21   10000 perm   1 sec   (6754 perm/sec)   p_kst 2.500000e-03   p_cons 8.812000e-01   p_joint 5.120000e-02

Joint ci ratio: 1.639141e-01	ci left: 2.551743e-02	ci right 3.012122e-02	k: 555	n:20000
Cons ci ratio: 9.633685e-03	ci left: 8.878706e-01	ci right 8.965150e-01	k: 17845	n:20000
KS ci ratio: 5.651098e-01	ci left: 1.727187e-03	ci right 3.123791e-03	k: 47	n:20000
PRR21   20000 perm   3 sec   (6006 perm/sec)   p_kst 2.350000e-03   p_cons 8.922500e-01   p_joint 2.775000e-02

Joint ci ratio: 1.213123e-01	ci left: 3.158952e-02	ci right 3.570144e-02	k: 1008	n:30000
Cons ci ratio: 7.781440e-03	ci left: 8.907660e-01	ci right 8.977575e-01	k: 26829	n:30000
KS ci ratio: 4.713617e-01	ci left: 1.760572e-03	ci right 2.872668e-03	k: 68	n:30000
PRR21   30000 perm   5 sec   (5709 perm/sec)   p_kst 2.266667e-03   p_cons 8.943000e-01   p_joint 3.360000e-02

Joint ci ratio: 8.568178e-02	ci left: 4.759051e-02	ci right 5.187516e-02	k: 1988	n:40000
Cons ci ratio: 6.714695e-03	ci left: 8.919293e-01	ci right 8.979632e-01	k: 35799	n:40000
KS ci ratio: 3.975279e-01	ci left: 1.944427e-03	ci right 2.930033e-03	k: 96	n:40000
PRR21   40000 perm   7 sec   (5513 perm/sec)   p_kst 2.400000e-03   p_cons 8.949750e-01   p_joint 4.970000e-02

Joint ci ratio: 8.454785e-02	ci left: 3.947457e-02	ci right 4.297895e-02	k: 2060	n:50000
Cons ci ratio: 5.977418e-03	ci left: 8.931497e-01	ci right 8.985242e-01	k: 44793	n:50000
KS ci ratio: 3.716530e-01	ci left: 1.808469e-03	ci right 2.650996e-03	k: 110	n:50000
PRR21   50000 perm   9 sec   (5357 perm/sec)   p_kst 2.200000e-03   p_cons 8.958600e-01   p_joint 4.120000e-02

Joint ci ratio: 7.762769e-02	ci left: 3.918193e-02	ci right 4.236269e-02	k: 2445	n:60000
Cons ci ratio: 5.752506e-03	ci left: 8.830093e-01	ci right 8.881200e-01	k: 53135	n:60000
KS ci ratio: 3.502471e-01	ci left: 1.719231e-03	ci right 2.463582e-03	k: 124	n:60000
PRR21   60000 perm   11 sec   (5223 perm/sec)   p_kst 2.066667e-03   p_cons 8.855833e-01   p_joint 4.075000e-02

Joint ci ratio: 7.578461e-02	ci left: 3.541738e-02	ci right 3.822118e-02	k: 2576	n:70000
Cons ci ratio: 5.063046e-03	ci left: 8.931526e-01	ci right 8.977003e-01	k: 62681	n:70000
KS ci ratio: 3.218789e-01	ci left: 1.774527e-03	ci right 2.467782e-03	k: 147	n:70000
PRR21   70000 perm   14 sec   (5095 perm/sec)   p_kst 2.100000e-03   p_cons 8.954429e-01   p_joint 3.680000e-02

Joint ci ratio: 6.700666e-02	ci left: 3.964866e-02	ci right 4.240975e-02	k: 3281	n:80000
Cons ci ratio: 4.731099e-03	ci left: 8.934983e-01	ci right 8.977479e-01	k: 71651	n:80000
KS ci ratio: 3.021150e-01	ci left: 1.783157e-03	ci right 2.428804e-03	k: 167	n:80000
PRR21   80000 perm   16 sec   (4972 perm/sec)   p_kst 2.087500e-03   p_cons 8.956375e-01   p_joint 4.101250e-02

Joint ci ratio: 6.680743e-02	ci left: 3.561218e-02	ci right 3.808446e-02	k: 3315	n:90000
Cons ci ratio: 4.475700e-03	ci left: 8.929789e-01	ci right 8.969956e-01	k: 80550	n:90000
KS ci ratio: 2.840848e-01	ci left: 1.811521e-03	ci right 2.421283e-03	k: 189	n:90000
PRR21   90000 perm   18 sec   (4870 perm/sec)   p_kst 2.100000e-03   p_cons 8.950000e-01   p_joint 3.683333e-02

Joint ci ratio: 5.240922e-02	ci left: 5.158980e-02	ci right 5.437620e-02	k: 5297	n:100000
Cons ci ratio: 4.247590e-03	ci left: 8.930130e-01	ci right 8.968241e-01	k: 89493	n:100000
KS ci ratio: 2.741734e-01	ci left: 1.760566e-03	ci right 2.328938e-03	k: 203	n:100000
PRR21   100000 perm   21 sec   (4775 perm/sec)   p_kst 2.030000e-03   p_cons 8.949300e-01   p_joint 5.297000e-02

Joint ci ratio: 5.742779e-02	ci left: 3.946817e-02	ci right 4.181068e-02	k: 4469	n:110000
Cons ci ratio: 4.050555e-03	ci left: 8.930727e-01	ci right 8.967065e-01	k: 98439	n:110000
KS ci ratio: 2.610647e-01	ci left: 1.778624e-03	ci right 2.320895e-03	k: 224	n:110000
PRR21   110000 perm   23 sec   (4687 perm/sec)   p_kst 2.036364e-03   p_cons 8.949000e-01   p_joint 4.062727e-02

Joint ci ratio: 5.490298e-02	ci left: 3.963009e-02	ci right 4.187551e-02	k: 4889	n:120000
Cons ci ratio: 3.891832e-03	ci left: 8.924796e-01	ci right 8.959680e-01	k: 107308	n:120000
KS ci ratio: 2.486619e-01	ci left: 1.809839e-03	ci right 2.331360e-03	k: 247	n:120000
PRR21   120000 perm   26 sec   (4599 perm/sec)   p_kst 2.058333e-03   p_cons 8.942333e-01   p_joint 4.074167e-02

Joint ci ratio: 5.284536e-02	ci left: 3.953356e-02	ci right 4.168699e-02	k: 5278	n:130000
Cons ci ratio: 3.741932e-03	ci left: 8.924069e-01	ci right 8.957601e-01	k: 116232	n:130000
KS ci ratio: 2.396527e-01	ci left: 1.807835e-03	ci right 2.307102e-03	k: 266	n:130000
PRR21   130000 perm   29 sec   (4517 perm/sec)   p_kst 2.046154e-03   p_cons 8.940923e-01   p_joint 4.060000e-02

Joint ci ratio: 5.092810e-02	ci left: 3.956507e-02	ci right 4.163972e-02	k: 5683	n:140000
Cons ci ratio: 3.604576e-03	ci left: 8.925339e-01	ci right 8.957640e-01	k: 125182	n:140000
KS ci ratio: 2.291605e-01	ci left: 1.846797e-03	ci right 2.331339e-03	k: 291	n:140000
PRR21   140000 perm   32 sec   (4431 perm/sec)   p_kst 2.078571e-03   p_cons 8.941571e-01   p_joint 4.059286e-02

Joint ci ratio: 4.923916e-02	ci left: 3.954091e-02	ci right 4.154357e-02	k: 6080	n:150000
Cons ci ratio: 3.491241e-03	ci left: 8.921024e-01	ci right 8.952290e-01	k: 134051	n:150000
KS ci ratio: 2.202841e-01	ci left: 1.874677e-03	ci right 2.344901e-03	k: 315	n:150000
PRR21   150000 perm   34 sec   (4355 perm/sec)   p_kst 2.100000e-03   p_cons 8.936733e-01   p_joint 4.053333e-02

Joint ci ratio: 4.775395e-02	ci left: 3.944662e-02	ci right 4.138258e-02	k: 6465	n:160000
Cons ci ratio: 3.376899e-03	ci left: 8.923493e-01	ci right 8.953739e-01	k: 143019	n:160000
KS ci ratio: 2.142682e-01	ci left: 1.863887e-03	ci right 2.316959e-03	k: 333	n:160000
PRR21   160000 perm   37 sec   (4282 perm/sec)   p_kst 2.081250e-03   p_cons 8.938687e-01   p_joint 4.040625e-02

Joint ci ratio: 4.625845e-02	ci left: 3.959110e-02	ci right 4.147167e-02	k: 6889	n:170000
Cons ci ratio: 3.273092e-03	ci left: 8.925684e-01	ci right 8.955005e-01	k: 151987	n:170000
KS ci ratio: 2.081280e-01	ci left: 1.865672e-03	ci right 2.304527e-03	k: 353	n:170000
PRR21   170000 perm   40 sec   (4212 perm/sec)   p_kst 2.076471e-03   p_cons 8.940412e-01   p_joint 4.052353e-02

Joint ci ratio: 4.504950e-02	ci left: 3.945657e-02	ci right 4.128050e-02	k: 7265	n:180000
Cons ci ratio: 3.186689e-03	ci left: 8.922614e-01	ci right 8.951148e-01	k: 160865	n:180000
KS ci ratio: 2.008788e-01	ci left: 1.899076e-03	ci right 2.328323e-03	k: 379	n:180000
PRR21   180000 perm   43 sec   (4142 perm/sec)   p_kst 2.105556e-03   p_cons 8.936944e-01   p_joint 4.036111e-02

Joint ci ratio: 4.385591e-02	ci left: 3.946697e-02	ci right 4.124182e-02	k: 7666	n:190000
Cons ci ratio: 3.104093e-03	ci left: 8.921519e-01	ci right 8.949308e-01	k: 169774	n:190000
KS ci ratio: 1.948193e-01	ci left: 1.919187e-03	ci right 2.338341e-03	k: 403	n:190000
PRR21   190000 perm   47 sec   (4078 perm/sec)   p_kst 2.121053e-03   p_cons 8.935474e-01   p_joint 4.034737e-02

Joint ci ratio: 4.281052e-02	ci left: 3.937299e-02	ci right 4.110036e-02	k: 8046	n:200000
Cons ci ratio: 3.027439e-03	ci left: 8.920644e-01	ci right 8.947741e-01	k: 178685	n:200000
KS ci ratio: 1.897218e-01	ci left: 1.927934e-03	ci right 2.336712e-03	k: 425	n:200000
PRR21   200000 perm   50 sec   (4017 perm/sec)   p_kst 2.125000e-03   p_cons 8.934250e-01   p_joint 4.023000e-02

Joint ci ratio: 4.175910e-02	ci left: 3.942985e-02	ci right 4.111621e-02	k: 8456	n:210000
Cons ci ratio: 2.954421e-03	ci left: 8.921010e-01	ci right 8.947453e-01	k: 187620	n:210000
KS ci ratio: 1.852118e-01	ci left: 1.931435e-03	ci right 2.330127e-03	k: 446	n:210000
PRR21   210000 perm   53 sec   (3957 perm/sec)   p_kst 2.123810e-03   p_cons 8.934286e-01   p_joint 4.026667e-02

Joint ci ratio: 4.074085e-02	ci left: 3.955852e-02	ci right 4.120816e-02	k: 8883	n:220000
Cons ci ratio: 2.886099e-03	ci left: 8.921578e-01	ci right 8.947409e-01	k: 196560	n:220000
KS ci ratio: 1.813977e-01	ci left: 1.926043e-03	ci right 2.314535e-03	k: 465	n:220000
PRR21   220000 perm   56 sec   (3898 perm/sec)   p_kst 2.113636e-03   p_cons 8.934545e-01   p_joint 4.037727e-02

Joint ci ratio: 3.980476e-02	ci left: 3.965493e-02	ci right 4.126972e-02	k: 9305	n:230000
Cons ci ratio: 2.820244e-03	ci left: 8.923502e-01	ci right 8.948747e-01	k: 205532	n:230000
KS ci ratio: 1.772613e-01	ci left: 1.933661e-03	ci right 2.313843e-03	k: 487	n:230000
PRR21   230000 perm   60 sec   (3842 perm/sec)   p_kst 2.117391e-03   p_cons 8.936174e-01   p_joint 4.045652e-02

Joint ci ratio: 3.907712e-02	ci left: 3.945476e-02	ci right 4.103137e-02	k: 9657	n:240000
Cons ci ratio: 2.761175e-03	ci left: 8.923553e-01	ci right 8.948268e-01	k: 214463	n:240000
KS ci ratio: 1.735662e-01	ci left: 1.936751e-03	ci right 2.308770e-03	k: 508	n:240000
PRR21   240000 perm   63 sec   (3787 perm/sec)   p_kst 2.116667e-03   p_cons 8.935958e-01   p_joint 4.023750e-02

Joint ci ratio: 3.821133e-02	ci left: 3.962359e-02	ci right 4.117109e-02	k: 10098	n:250000
Cons ci ratio: 2.707490e-03	ci left: 8.922320e-01	ci right 8.946549e-01	k: 223362	n:250000
KS ci ratio: 1.678853e-01	ci left: 1.993305e-03	ci right 2.362389e-03	k: 543	n:250000
PRR21   250000 perm   67 sec   (3734 perm/sec)   p_kst 2.172000e-03   p_cons 8.934480e-01   p_joint 4.039200e-02

Joint ci ratio: 3.750458e-02	ci left: 3.956633e-02	ci right 4.108240e-02	k: 10483	n:260000
Cons ci ratio: 2.656331e-03	ci left: 8.921534e-01	ci right 8.945302e-01	k: 232270	n:260000
KS ci ratio: 1.648823e-01	ci left: 1.990359e-03	ci right 2.351651e-03	k: 563	n:260000
PRR21   260000 perm   71 sec   (3683 perm/sec)   p_kst 2.165385e-03   p_cons 8.933462e-01   p_joint 4.031923e-02

Joint ci ratio: 3.674942e-02	ci left: 3.969344e-02	ci right 4.118311e-02	k: 10917	n:270000
Cons ci ratio: 2.608268e-03	ci left: 8.920587e-01	ci right 8.943921e-01	k: 241172	n:270000
KS ci ratio: 1.612071e-01	ci left: 2.009011e-03	ci right 2.364773e-03	k: 589	n:270000
PRR21   270000 perm   74 sec   (3634 perm/sec)   p_kst 2.181481e-03   p_cons 8.932296e-01   p_joint 4.043333e-02

Joint ci ratio: 3.610113e-02	ci left: 3.967722e-02	ci right 4.113946e-02	k: 11313	n:280000
Cons ci ratio: 2.562001e-03	ci left: 8.920250e-01	ci right 8.943168e-01	k: 250089	n:280000
KS ci ratio: 1.584128e-01	ci left: 2.009261e-03	ci right 2.358314e-03	k: 610	n:280000
PRR21   280000 perm   78 sec   (3586 perm/sec)   p_kst 2.178571e-03   p_cons 8.931750e-01   p_joint 4.040357e-02

Joint ci ratio: 3.551759e-02	ci left: 3.959395e-02	ci right 4.102905e-02	k: 11689	n:290000
Cons ci ratio: 2.517702e-03	ci left: 8.920252e-01	ci right 8.942773e-01	k: 259015	n:290000
KS ci ratio: 1.553898e-01	ci left: 2.019487e-03	ci right 2.362997e-03	k: 634	n:290000
PRR21   290000 perm   82 sec   (3540 perm/sec)   p_kst 2.186207e-03   p_cons 8.931552e-01   p_joint 4.030690e-02

Joint ci ratio: 3.493733e-02	ci left: 3.956930e-02	ci right 4.097960e-02	k: 12081	n:300000
Cons ci ratio: 2.475148e-03	ci left: 8.920625e-01	ci right 8.942765e-01	k: 267952	n:300000
KS ci ratio: 1.528826e-01	ci left: 2.019471e-03	ci right 2.356928e-03	k: 655	n:300000
PRR21   300000 perm   86 sec   (3493 perm/sec)   p_kst 2.183333e-03   p_cons 8.931733e-01   p_joint 4.027000e-02

Joint ci ratio: 3.438605e-02	ci left: 3.954321e-02	ci right 4.092991e-02	k: 12472	n:310000
Cons ci ratio: 2.434887e-03	ci left: 8.920815e-01	ci right 8.942595e-01	k: 276884	n:310000
KS ci ratio: 1.500494e-01	ci left: 2.031916e-03	ci right 2.364596e-03	k: 680	n:310000
PRR21   310000 perm   90 sec   (3441 perm/sec)   p_kst 2.193548e-03   p_cons 8.931742e-01   p_joint 4.023226e-02

Joint ci ratio: 3.384225e-02	ci left: 3.955922e-02	ci right 4.092412e-02	k: 12876	n:320000
Cons ci ratio: 2.397197e-03	ci left: 8.920463e-01	ci right 8.941903e-01	k: 285799	n:320000
KS ci ratio: 1.467445e-01	ci left: 2.061699e-03	ci right 2.391169e-03	k: 711	n:320000
PRR21   320000 perm   94 sec   (3395 perm/sec)   p_kst 2.221875e-03   p_cons 8.931219e-01   p_joint 4.023750e-02

Joint ci ratio: 3.331301e-02	ci left: 3.959847e-02	ci right 4.094295e-02	k: 13288	n:330000
Cons ci ratio: 2.360154e-03	ci left: 8.920986e-01	ci right 8.942096e-01	k: 294742	n:330000
KS ci ratio: 1.449249e-01	ci left: 2.051778e-03	ci right 2.375245e-03	k: 729	n:330000
PRR21   330000 perm   98 sec   (3351 perm/sec)   p_kst 2.209091e-03   p_cons 8.931576e-01   p_joint 4.026667e-02

Joint ci ratio: 3.283783e-02	ci left: 3.956554e-02	ci right 4.088937e-02	k: 13676	n:340000
Cons ci ratio: 2.327106e-03	ci left: 8.919562e-01	ci right 8.940371e-01	k: 303620	n:340000
KS ci ratio: 1.431714e-01	ci left: 2.042464e-03	ci right 2.360234e-03	k: 747	n:340000
PRR21   340000 perm   103 sec   (3303 perm/sec)   p_kst 2.197059e-03   p_cons 8.930000e-01   p_joint 4.022353e-02

Joint ci ratio: 3.235247e-02	ci left: 3.960549e-02	ci right 4.091071e-02	k: 14089	n:350000
Cons ci ratio: 2.294203e-03	ci left: 8.919225e-01	ci right 8.939739e-01	k: 312533	n:350000
KS ci ratio: 1.409280e-01	ci left: 2.050243e-03	ci right 2.363804e-03	k: 771	n:350000
PRR21   350000 perm   107 sec   (3263 perm/sec)   p_kst 2.202857e-03   p_cons 8.929514e-01   p_joint 4.025429e-02

Joint ci ratio: 3.190521e-02	ci left: 3.960201e-02	ci right 4.088874e-02	k: 14487	n:360000
Cons ci ratio: 2.261572e-03	ci left: 8.919829e-01	ci right 8.940052e-01	k: 321479	n:360000
KS ci ratio: 1.389619e-01	ci left: 2.052263e-03	ci right 2.361393e-03	k: 793	n:360000
PRR21   360000 perm   112 sec   (3224 perm/sec)   p_kst 2.202778e-03   p_cons 8.929972e-01   p_joint 4.024167e-02

Joint ci ratio: 3.146279e-02	ci left: 3.963102e-02	ci right 4.090052e-02	k: 14897	n:370000
Cons ci ratio: 2.230800e-03	ci left: 8.919968e-01	ci right 8.939916e-01	k: 330409	n:370000
KS ci ratio: 1.369078e-01	ci left: 2.059424e-03	ci right 2.364672e-03	k: 817	n:370000
PRR21   370000 perm   116 sec   (3185 perm/sec)   p_kst 2.208108e-03   p_cons 8.929973e-01   p_joint 4.026216e-02

Joint ci ratio: 3.103405e-02	ci left: 3.966907e-02	ci right 4.092216e-02	k: 15311	n:380000
Cons ci ratio: 2.201493e-03	ci left: 8.919891e-01	ci right 8.939575e-01	k: 339331	n:380000
KS ci ratio: 1.351031e-01	ci left: 2.061153e-03	ci right 2.362308e-03	k: 839	n:380000
PRR21   380000 perm   121 sec   (3149 perm/sec)   p_kst 2.207895e-03   p_cons 8.929763e-01   p_joint 4.029211e-02

Joint ci ratio: 3.061528e-02	ci left: 3.972310e-02	ci right 4.096066e-02	k: 15732	n:390000
Cons ci ratio: 2.172903e-03	ci left: 8.920179e-01	ci right 8.939608e-01	k: 348267	n:390000
KS ci ratio: 1.332905e-01	ci left: 2.065298e-03	ci right 2.362688e-03	k: 862	n:390000
PRR21   390000 perm   125 sec   (3113 perm/sec)   p_kst 2.210256e-03   p_cons 8.929923e-01   p_joint 4.033846e-02

Joint ci ratio: 3.010635e-02	ci left: 4.004755e-02	ci right 4.127412e-02	k: 16263	n:400000
Cons ci ratio: 2.144781e-03	ci left: 8.921007e-01	ci right 8.940186e-01	k: 357225	n:400000
KS ci ratio: 1.317727e-01	ci left: 2.062007e-03	ci right 2.355278e-03	k: 882	n:400000
PRR21   400000 perm   130 sec   (3079 perm/sec)   p_kst 2.205000e-03   p_cons 8.930625e-01   p_joint 4.065750e-02

Joint ci ratio: 2.976915e-02	ci left: 3.997128e-02	ci right 4.118157e-02	k: 16635	n:410000
Cons ci ratio: 2.118562e-03	ci left: 8.921037e-01	ci right 8.939981e-01	k: 366152	n:410000
KS ci ratio: 1.303779e-01	ci left: 2.056536e-03	ci right 2.345693e-03	k: 901	n:410000
PRR21   410000 perm   135 sec   (3044 perm/sec)   p_kst 2.197561e-03   p_cons 8.930537e-01   p_joint 4.057317e-02

Joint ci ratio: 2.942591e-02	ci left: 3.994363e-02	ci right 4.113891e-02	k: 17026	n:420000
Cons ci ratio: 2.092889e-03	ci left: 8.921425e-01	ci right 8.940140e-01	k: 375094	n:420000
KS ci ratio: 1.290968e-01	ci left: 2.049036e-03	ci right 2.334091e-03	k: 919	n:420000
PRR21   420000 perm   140 sec   (3009 perm/sec)   p_kst 2.188095e-03   p_cons 8.930810e-01   p_joint 4.053810e-02

Joint ci ratio: 2.906124e-02	ci left: 4.000511e-02	ci right 4.118714e-02	k: 17455	n:430000
Cons ci ratio: 2.068506e-03	ci left: 8.921446e-01	ci right 8.939942e-01	k: 384021	n:430000
KS ci ratio: 1.273773e-01	ci left: 2.057659e-03	ci right 2.339813e-03	k: 944	n:430000
PRR21   430000 perm   145 sec   (2974 perm/sec)   p_kst 2.195349e-03   p_cons 8.930721e-01   p_joint 4.059302e-02

Joint ci ratio: 2.870729e-02	ci left: 4.007065e-02	ci right 4.123996e-02	k: 17887	n:440000
Cons ci ratio: 2.044834e-03	ci left: 8.921582e-01	ci right 8.939866e-01	k: 392953	n:440000
KS ci ratio: 1.261818e-01	ci left: 2.050506e-03	ci right 2.328842e-03	k: 962	n:440000
PRR21   440000 perm   150 sec   (2941 perm/sec)   p_kst 2.186364e-03   p_cons 8.930750e-01   p_joint 4.065227e-02

Joint ci ratio: 2.836597e-02	ci left: 4.013336e-02	ci right 4.129034e-02	k: 18319	n:450000
Cons ci ratio: 2.022897e-03	ci left: 8.920821e-01	ci right 8.938907e-01	k: 401845	n:450000
KS ci ratio: 1.245116e-01	ci left: 2.060906e-03	ci right 2.336678e-03	k: 988	n:450000
PRR21   450000 perm   155 sec   (2908 perm/sec)   p_kst 2.195556e-03   p_cons 8.929889e-01   p_joint 4.070889e-02

Joint ci ratio: 2.804979e-02	ci left: 4.015671e-02	ci right 4.130126e-02	k: 18734	n:460000
Cons ci ratio: 2.001741e-03	ci left: 8.920006e-01	ci right 8.937901e-01	k: 410733	n:460000
KS ci ratio: 1.228453e-01	ci left: 2.072984e-03	ci right 2.346390e-03	k: 1015	n:460000
PRR21   460000 perm   160 sec   (2876 perm/sec)   p_kst 2.206522e-03   p_cons 8.928978e-01   p_joint 4.072609e-02

Joint ci ratio: 2.777194e-02	ci left: 4.010094e-02	ci right 4.123239e-02	k: 19112	n:470000
Cons ci ratio: 1.980551e-03	ci left: 8.919889e-01	ci right 8.937594e-01	k: 419652	n:470000
KS ci ratio: 1.216540e-01	ci left: 2.070130e-03	ci right 2.340321e-03	k: 1035	n:470000
PRR21   470000 perm   165 sec   (2845 perm/sec)   p_kst 2.202128e-03   p_cons 8.928766e-01   p_joint 4.066383e-02

Joint ci ratio: 2.746841e-02	ci left: 4.014274e-02	ci right 4.126281e-02	k: 19536	n:480000
Cons ci ratio: 1.959849e-03	ci left: 8.919946e-01	ci right 8.937465e-01	k: 428579	n:480000
KS ci ratio: 1.207837e-01	ci left: 2.057303e-03	ci right 2.323762e-03	k: 1050	n:480000
PRR21   480000 perm   171 sec   (2814 perm/sec)   p_kst 2.187500e-03   p_cons 8.928729e-01   p_joint 4.070000e-02

Joint ci ratio: 2.718029e-02	ci left: 4.016669e-02	ci right 4.127548e-02	k: 19952	n:490000
Cons ci ratio: 1.940404e-03	ci left: 8.919386e-01	ci right 8.936730e-01	k: 437476	n:490000
KS ci ratio: 1.193719e-01	ci left: 2.064806e-03	ci right 2.328890e-03	k: 1075	n:490000
PRR21   490000 perm   176 sec   (2785 perm/sec)   p_kst 2.193878e-03   p_cons 8.928082e-01   p_joint 4.071837e-02

Joint ci ratio: 2.690726e-02	ci left: 4.017185e-02	ci right 4.126948e-02	k: 20359	n:500000
Cons ci ratio: 1.920562e-03	ci left: 8.919814e-01	ci right 8.936981e-01	k: 446421	n:500000
KS ci ratio: 1.182239e-01	ci left: 2.064262e-03	ci right 2.325560e-03	k: 1096	n:500000
PRR21   500000 perm   181 sec   (2755 perm/sec)   p_kst 2.192000e-03   p_cons 8.928420e-01   p_joint 4.071800e-02

Joint ci ratio: 2.668451e-02	ci left: 4.005413e-02	ci right 4.113934e-02	k: 20703	n:510000
Cons ci ratio: 1.900790e-03	ci left: 8.920756e-01	ci right 8.937748e-01	k: 455393	n:510000
KS ci ratio: 1.171610e-01	ci left: 2.061847e-03	ci right 2.320331e-03	k: 1116	n:510000
PRR21   510000 perm   187 sec   (2726 perm/sec)   p_kst 2.188235e-03   p_cons 8.929275e-01   p_joint 4.059412e-02

Joint ci ratio: 2.642470e-02	ci left: 4.006517e-02	ci right 4.113995e-02	k: 21112	n:520000
Cons ci ratio: 1.881805e-03	ci left: 8.921470e-01	ci right 8.938294e-01	k: 464355	n:520000
KS ci ratio: 1.157189e-01	ci left: 2.074475e-03	ci right 2.331122e-03	k: 1144	n:520000
PRR21   520000 perm   193 sec   (2698 perm/sec)   p_kst 2.200000e-03   p_cons 8.929904e-01   p_joint 4.060000e-02

Joint ci ratio: 2.617044e-02	ci left: 4.008148e-02	ci right 4.114619e-02	k: 21524	n:530000
Cons ci ratio: 1.863726e-03	ci left: 8.921799e-01	ci right 8.938460e-01	k: 473298	n:530000
KS ci ratio: 1.148698e-01	ci left: 2.066484e-03	ci right 2.320139e-03	k: 1161	n:530000
PRR21   530000 perm   199 sec   (2669 perm/sec)   p_kst 2.190566e-03   p_cons 8.930151e-01   p_joint 4.061132e-02

Joint ci ratio: 2.603366e-02	ci left: 3.976965e-02	ci right 4.082048e-02	k: 21758	n:540000
Cons ci ratio: 1.846731e-03	ci left: 8.921521e-01	ci right 8.938030e-01	k: 482209	n:540000
KS ci ratio: 1.136534e-01	ci left: 2.073189e-03	ci right 2.324792e-03	k: 1186	n:540000
PRR21   540000 perm   204 sec   (2641 perm/sec)   p_kst 2.196296e-03   p_cons 8.929796e-01   p_joint 4.029259e-02

Joint ci ratio: 2.568557e-02	ci left: 4.010522e-02	ci right 4.115054e-02	k: 22344	n:550000
Cons ci ratio: 1.829775e-03	ci left: 8.921691e-01	ci right 8.938049e-01	k: 491144	n:550000
KS ci ratio: 1.127549e-01	ci left: 2.069062e-03	ci right 2.318047e-03	k: 1205	n:550000
PRR21   550000 perm   210 sec   (2615 perm/sec)   p_kst 2.190909e-03   p_cons 8.929891e-01   p_joint 4.062545e-02

Joint ci ratio: 2.546003e-02	ci left: 4.009522e-02	ci right 4.113097e-02	k: 22742	n:560000
Cons ci ratio: 1.813311e-03	ci left: 8.921821e-01	ci right 8.938031e-01	k: 500077	n:560000
KS ci ratio: 1.116492e-01	ci left: 2.073769e-03	ci right 2.320712e-03	k: 1229	n:560000
PRR21   560000 perm   216 sec   (2589 perm/sec)   p_kst 2.194643e-03   p_cons 8.929946e-01   p_joint 4.061071e-02

Joint ci ratio: 2.524999e-02	ci left: 4.005597e-02	ci right 4.108204e-02	k: 23123	n:570000
Cons ci ratio: 1.797548e-03	ci left: 8.921665e-01	ci right 8.937734e-01	k: 508994	n:570000
KS ci ratio: 1.108860e-01	ci left: 2.066381e-03	ci right 2.310653e-03	k: 1246	n:570000
PRR21   570000 perm   222 sec   (2564 perm/sec)   p_kst 2.185965e-03   p_cons 8.929719e-01   p_joint 4.056667e-02

Joint ci ratio: 2.503286e-02	ci left: 4.005581e-02	ci right 4.107293e-02	k: 23526	n:580000
Cons ci ratio: 1.783346e-03	ci left: 8.920269e-01	ci right 8.936209e-01	k: 517839	n:580000
KS ci ratio: 1.099206e-01	ci left: 2.067638e-03	ci right 2.309792e-03	k: 1268	n:580000
PRR21   580000 perm   228 sec   (2539 perm/sec)   p_kst 2.186207e-03   p_cons 8.928259e-01   p_joint 4.056207e-02

Joint ci ratio: 2.482556e-02	ci left: 4.004221e-02	ci right 4.105044e-02	k: 23921	n:590000
Cons ci ratio: 1.768799e-03	ci left: 8.919653e-01	ci right 8.935461e-01	k: 526727	n:590000
KS ci ratio: 1.089800e-01	ci left: 2.068860e-03	ci right 2.308951e-03	k: 1290	n:590000
PRR21   590000 perm   235 sec   (2514 perm/sec)   p_kst 2.186441e-03   p_cons 8.927576e-01   p_joint 4.054407e-02

Joint ci ratio: 2.461489e-02	ci left: 4.005561e-02	ci right 4.105550e-02	k: 24332	n:600000
Cons ci ratio: 1.753715e-03	ci left: 8.920028e-01	ci right 8.935701e-01	k: 535673	n:600000
KS ci ratio: 1.077756e-01	ci left: 2.081403e-03	ci right 2.320111e-03	k: 1319	n:600000
PRR21   600000 perm   241 sec   (2491 perm/sec)   p_kst 2.198333e-03   p_cons 8.927883e-01   p_joint 4.055333e-02

Joint ci ratio: 2.441670e-02	ci left: 4.004579e-02	ci right 4.103727e-02	k: 24729	n:610000
Cons ci ratio: 1.738877e-03	ci left: 8.920539e-01	ci right 8.936080e-01	k: 544628	n:610000
KS ci ratio: 1.071690e-01	ci left: 2.071210e-03	ci right 2.307328e-03	k: 1334	n:610000
PRR21   610000 perm   247 sec   (2468 perm/sec)   p_kst 2.186885e-03   p_cons 8.928328e-01   p_joint 4.053934e-02

Joint ci ratio: 2.422422e-02	ci left: 4.003311e-02	ci right 4.101635e-02	k: 25124	n:620000
Cons ci ratio: 1.724932e-03	ci left: 8.920451e-01	ci right 8.935867e-01	k: 553547	n:620000
KS ci ratio: 1.061792e-01	ci left: 2.077051e-03	ci right 2.311510e-03	k: 1359	n:620000
PRR21   620000 perm   254 sec   (2446 perm/sec)   p_kst 2.191935e-03   p_cons 8.928177e-01   p_joint 4.052258e-02

Joint ci ratio: 2.403180e-02	ci left: 4.003506e-02	ci right 4.101044e-02	k: 25528	n:630000
Cons ci ratio: 1.711829e-03	ci left: 8.919793e-01	ci right 8.935091e-01	k: 562430	n:630000
KS ci ratio: 1.053307e-01	ci left: 2.078079e-03	ci right 2.310664e-03	k: 1381	n:630000
PRR21   630000 perm   260 sec   (2423 perm/sec)   p_kst 2.192063e-03   p_cons 8.927460e-01   p_joint 4.052063e-02

Joint ci ratio: 2.383336e-02	ci left: 4.007116e-02	ci right 4.103925e-02	k: 25954	n:640000
Cons ci ratio: 1.698298e-03	ci left: 8.919972e-01	ci right 8.935149e-01	k: 571365	n:640000
KS ci ratio: 1.046142e-01	ci left: 2.074517e-03	ci right 2.305027e-03	k: 1400	n:640000
PRR21   640000 perm   267 sec   (2401 perm/sec)   p_kst 2.187500e-03   p_cons 8.927578e-01   p_joint 4.055313e-02

Joint ci ratio: 2.365004e-02	ci left: 4.007253e-02	ci right 4.103311e-02	k: 26358	n:650000
Cons ci ratio: 1.685611e-03	ci left: 8.919543e-01	ci right 8.934606e-01	k: 580261	n:650000
KS ci ratio: 1.035475e-01	ci left: 2.086056e-03	ci right 2.315340e-03	k: 1429	n:650000
PRR21   650000 perm   273 sec   (2380 perm/sec)   p_kst 2.198462e-03   p_cons 8.927092e-01   p_joint 4.055077e-02

Joint ci ratio: 2.348598e-02	ci left: 4.002417e-02	ci right 4.097684e-02	k: 26729	n:660000
Cons ci ratio: 1.672727e-03	ci left: 8.919676e-01	ci right 8.934623e-01	k: 589193	n:660000
KS ci ratio: 1.026538e-01	ci left: 2.091351e-03	ci right 2.319114e-03	k: 1454	n:660000
PRR21   660000 perm   280 sec   (2359 perm/sec)   p_kst 2.203030e-03   p_cons 8.927167e-01   p_joint 4.049848e-02

Joint ci ratio: 2.330871e-02	ci left: 4.003219e-02	ci right 4.097776e-02	k: 27137	n:670000
Cons ci ratio: 1.659966e-03	ci left: 8.919999e-01	ci right 8.934833e-01	k: 598138	n:670000
KS ci ratio: 1.015767e-01	ci left: 2.105225e-03	ci right 2.331950e-03	k: 1485	n:670000
PRR21   670000 perm   287 sec   (2337 perm/sec)   p_kst 2.216418e-03   p_cons 8.927433e-01   p_joint 4.050299e-02

Joint ci ratio: 2.313715e-02	ci left: 4.003415e-02	ci right 4.097271e-02	k: 27541	n:680000
Cons ci ratio: 1.648316e-03	ci left: 8.919354e-01	ci right 8.934083e-01	k: 607018	n:680000
KS ci ratio: 1.007661e-01	ci left: 2.108667e-03	ci right 2.333843e-03	k: 1509	n:680000
PRR21   680000 perm   294 sec   (2316 perm/sec)   p_kst 2.219118e-03   p_cons 8.926735e-01   p_joint 4.050147e-02

Joint ci ratio: 2.297275e-02	ci left: 4.002455e-02	ci right 4.095613e-02	k: 27937	n:690000
Cons ci ratio: 1.636448e-03	ci left: 8.919267e-01	ci right 8.933889e-01	k: 615935	n:690000
KS ci ratio: 9.990937e-02	ci left: 2.114842e-03	ci right 2.338645e-03	k: 1535	n:690000
PRR21   690000 perm   301 sec   (2296 perm/sec)   p_kst 2.224638e-03   p_cons 8.926594e-01   p_joint 4.048841e-02

Outputting figure to mutsig2_images.part000000000138/PRR21.2_1174_690000_0.0022246_0.89266_0.040488.png
                gene_name: PRR21
               theta_stop: 0.100 
                    nperm: 690000 
                     p_ks: 0.0022 
        ci_ks_bounds_left: 0.0021 
       ci_ks_bounds_right: 0.0023 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.041 

Current progress: 98 percent done.
PRRG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.936549e-02	ci left: 6.310052e-01	ci right 6.499129e-01	k: 6405	n:10000
KS ci ratio: 2.117623e-02	ci left: 7.657748e-01	ci right 7.822653e-01	k: 7741	n:10000
PRRG4   10000 perm   1 sec   (6828 perm/sec)   p_kst 7.741000e-01   p_cons 6.405000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000138/PRRG4.2_701_10000_0.7741_0.6405_1.png
                gene_name: PRRG4
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000138
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 138 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1559>
Subject: Job 9894094: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1559>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000139> was used as the working directory.
Started at Sat Oct  6 00:26:07 2012
Results reported at Sat Oct  6 00:35:57 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000139.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000139.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 139  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000139.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    658.64 sec.
    Max Memory :      3669 MB
    Max Swap   :      6050 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
139
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 139
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 139: processing genes 12442 - 12531
Calculating significance of each gene.
Using projection method.
12442	PRRT2	6.832503e-01
12443	PRRT3	9.219723e-01
12444	PRRX1	3.566810e-01
12445	PRRX2	1
12446	PRSS1	4.882007e-02
12447	PRSS12	2.287052e-02
12448	PRSS16	8.838292e-01
12449	PRSS2	6.978209e-01
12450	PRSS21	6.457180e-01
12451	PRSS22	4.169727e-01
12452	PRSS23	4.133138e-01
12453	PRSS27	7.231066e-01
12454	PRSS3	1.610599e-02
12455	PRSS33	1
12456	PRSS35	1.445472e-02
12457	PRSS36	9.225237e-01
12458	PRSS37	4.129287e-01
12459	PRSS38	5.055864e-01
12460	PRSS42	5.135455e-01
12461	PRSS45	4.308479e-01
12462	PRSS48	1.676020e-01
12463	PRSS50	1
12464	PRSS53	1
12465	PRSS54	6.785228e-01
12466	PRSS55	1.669587e-01
12467	PRSS8	4.190065e-01
12468	PRSSL1	1
12469	PRTFDC1	6.907829e-01
12470	PRTG	4.514161e-01
12471	PRTN3	1
12472	PRUNE	9.119005e-01
12473	PRUNE2	8.029223e-01
12474	PRX	9.090032e-01
12475	PSAP	7.519840e-01
12476	PSAPL1	6.380357e-01
12477	PSAT1	1.204252e-01
12478	PSCA	2.598492e-01
12479	PSD	4.290587e-01
12480	PSD2	8.035066e-02
12481	PSD3	9.972071e-01
12482	PSD4	8.954320e-01
12483	PSEN1	4.053706e-01
12484	PSEN2	7.224207e-01
12485	PSENEN	1
12486	PSG1	6.061923e-02
12487	PSG11	1
12488	PSG2	1.661223e-02
12489	PSG3	1.391794e-01
12490	PSG4	2.171880e-02
12491	PSG5	7.584344e-01
12492	PSG6	5.021577e-01
12493	PSG7	1.437898e-02
In gene PSG8 the following bins exceed PROBCAP:
    COAD-AA-3851	categ 6	N = 1301    n = 1	mu =   3.95e-07
12494	PSG8	2.681950e-04
12495	PSG9	9.027857e-03
12496	PSIP1	8.783934e-01
12497	PSKH1	8.406819e-01
12498	PSKH2	7.843694e-01
12499	PSMA1	4.822638e-01
12500	PSMA2	4.778372e-01
12501	PSMA3	2.086494e-01
12502	PSMA4	1.795485e-01
12503	PSMA5	6.312346e-01
12504	PSMA6	1
12505	PSMA7	8.266516e-01
12506	PSMA8	1.780648e-01
12507	PSMB1	1
12508	PSMB10	1
12509	PSMB11	7.429937e-01
12510	PSMB2	1.450115e-01
12511	PSMB3	7.717525e-01
12512	PSMB4	1
In gene PSMB5 the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 804     n = 1	mu =   7.59e-07
12513	PSMB5	2.454096e-01
12514	PSMB6	3.283844e-01
12515	PSMB7	1
12516	PSMB8	3.435148e-02
12517	PSMB9	2.145137e-02
12518	PSMC1	1
12519	PSMC2	9.095603e-01
12520	PSMC3	2.113995e-01
12521	PSMC3IP	4.810331e-01
12522	PSMC4	8.477257e-01
12523	PSMC5	1.633847e-01
12524	PSMC6	8.398383e-01
12525	PSMD1	1.858568e-01
12526	PSMD10	4.308465e-01
12527	PSMD11	5.378513e-01
12528	PSMD12	5.523815e-01
12529	PSMD13	4.530329e-01
12530	PSMD14	6.185655e-01
12531	PSMD2	5.356058e-01
Done

Running MutSig 2:
Scatter job 139: processing genes 12442 - 12531
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PRUNE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.840317e-02	ci left: 6.462931e-01	ci right 6.650161e-01	k: 6557	n:10000
Cons ci ratio: 1.152503e-02	ci left: 9.150246e-01	ci right 9.257290e-01	k: 9205	n:10000
KS ci ratio: 3.826467e-02	ci left: 5.021507e-01	ci right 5.218423e-01	k: 5120	n:10000
PRUNE2   10000 perm   4 sec   (2538 perm/sec)   p_kst 5.120000e-01   p_cons 9.205000e-01   p_joint 6.557000e-01

Outputting figure to mutsig2_images.part000000000139/PRUNE2.13_9343_10000_0.512_0.9205_0.6557.png
                gene_name: PRUNE2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 2 percent done.
PRSS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.843771e-02	ci left: 1.568896e-01	ci right 1.715066e-01	k: 1641	n:10000
Cons ci ratio: 1.366775e-01	ci left: 7.078334e-02	ci right 8.126524e-02	k: 759	n:10000
KS ci ratio: 8.383558e-02	ci left: 1.718257e-01	ci right 1.869615e-01	k: 1793	n:10000
PRSS12   10000 perm   2 sec   (4390 perm/sec)   p_kst 1.793000e-01   p_cons 7.590000e-02   p_joint 1.641000e-01

Joint ci ratio: 8.635687e-02	ci left: 8.935242e-02	ci right 9.746624e-02	k: 1867	n:20000
Cons ci ratio: 9.563005e-02	ci left: 7.378204e-02	ci right 8.124134e-02	k: 1549	n:20000
KS ci ratio: 5.699038e-02	ci left: 1.858196e-01	ci right 1.967703e-01	k: 3825	n:20000
PRSS12   20000 perm   5 sec   (3972 perm/sec)   p_kst 1.912500e-01   p_cons 7.745000e-02   p_joint 9.335000e-02

Outputting figure to mutsig2_images.part000000000139/PRSS12.8_2680_20000_0.19125_0.07745_0.09335.png
                gene_name: PRSS12
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.097 

Current progress: 4 percent done.
PRSS35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.680355e-02	ci left: 3.133413e-01	ci right 3.317622e-01	k: 3225	n:10000
Cons ci ratio: 6.239472e-02	ci left: 2.740864e-01	ci right 2.918402e-01	k: 2829	n:10000
KS ci ratio: 9.655248e-02	ci left: 1.346260e-01	ci right 1.483836e-01	k: 1414	n:10000
PRSS35   10000 perm   2 sec   (5691 perm/sec)   p_kst 1.414000e-01   p_cons 2.829000e-01   p_joint 3.225000e-01

Outputting figure to mutsig2_images.part000000000139/PRSS35.8_1246_10000_0.1414_0.2829_0.3225.png
                gene_name: PRSS35
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 6 percent done.
PSD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.366282e-02	ci left: 5.657417e-01	ci right 5.852143e-01	k: 5755	n:10000
Cons ci ratio: 6.776877e-02	ci left: 2.421299e-01	ci right 2.592155e-01	k: 2506	n:10000
KS ci ratio: 1.281508e-02	ci left: 8.975446e-01	ci right 9.092192e-01	k: 9035	n:10000
PSD2   10000 perm   2 sec   (5011 perm/sec)   p_kst 9.035000e-01   p_cons 2.506000e-01   p_joint 5.755000e-01

Outputting figure to mutsig2_images.part000000000139/PSD2.8_2372_10000_0.9035_0.2506_0.5755.png
                gene_name: PSD2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 8 percent done.
PSG8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.290325e-02	ci left: 7.368421e-01	ci right 7.540147e-01	k: 7455	n:10000
Cons ci ratio: 2.839688e-02	ci left: 6.463937e-01	ci right 6.651154e-01	k: 6558	n:10000
KS ci ratio: 3.013503e-02	ci left: 6.189430e-01	ci right 6.379821e-01	k: 6285	n:10000
PSG8   10000 perm   2 sec   (5463 perm/sec)   p_kst 6.285000e-01   p_cons 6.558000e-01   p_joint 7.455000e-01

Outputting figure to mutsig2_images.part000000000139/PSG8.8_1322_10000_0.6285_0.6558_0.7455.png
                gene_name: PSG8
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 10 percent done.
PSMD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.052749e-02	ci left: 7.766130e-01	ci right 7.928209e-01	k: 7848	n:10000
Cons ci ratio: 9.536123e-03	ci left: 9.395202e-01	ci right 9.486189e-01	k: 9442	n:10000
KS ci ratio: 4.453122e-02	ci left: 4.267492e-01	ci right 4.462878e-01	k: 4365	n:10000
PSMD1   10000 perm   2 sec   (4399 perm/sec)   p_kst 4.365000e-01   p_cons 9.442000e-01   p_joint 7.848000e-01

Outputting figure to mutsig2_images.part000000000139/PSMD1.8_2958_10000_0.4365_0.9442_0.7848.png
                gene_name: PSMD1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 12 percent done.
PSG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.573434e-02	ci left: 6.897011e-01	ci right 7.077830e-01	k: 6988	n:10000
KS ci ratio: 4.265357e-02	ci left: 4.479986e-01	ci right 4.676260e-01	k: 4578	n:10000
PSG4   10000 perm   2 sec   (5605 perm/sec)   p_kst 4.578000e-01   p_cons 6.988000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PSG4.7_1284_10000_0.4578_0.6988_1.png
                gene_name: PSG4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
PSG9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.366397e-02	ci left: 4.364239e-01	ci right 4.560074e-01	k: 4462	n:10000
KS ci ratio: 1.621032e-02	ci left: 8.469262e-01	ci right 8.608669e-01	k: 8540	n:10000
PSG9   10000 perm   2 sec   (6135 perm/sec)   p_kst 8.540000e-01   p_cons 4.462000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PSG9.7_1305_10000_0.854_0.4462_1.png
                gene_name: PSG9
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
PRSS55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.430680e-02	ci left: 8.760270e-01	ci right 8.887493e-01	k: 8825	n:10000
Cons ci ratio: 2.739085e-02	ci left: 6.625985e-01	ci right 6.811013e-01	k: 6719	n:10000
KS ci ratio: 2.539863e-02	ci left: 6.952470e-01	ci right 7.132339e-01	k: 7043	n:10000
PRSS55   10000 perm   2 sec   (6155 perm/sec)   p_kst 7.043000e-01   p_cons 6.719000e-01   p_joint 8.825000e-01

Outputting figure to mutsig2_images.part000000000139/PRSS55.6_1079_10000_0.7043_0.6719_0.8825.png
                gene_name: PRSS55
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 18 percent done.
PSMC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.073728e-02	ci left: 3.642059e-01	ci right 3.832677e-01	k: 3737	n:10000
Cons ci ratio: 8.487514e-02	ci left: 1.682863e-01	ci right 1.833030e-01	k: 1757	n:10000
KS ci ratio: 4.382332e-02	ci left: 4.346283e-01	ci right 4.542041e-01	k: 4444	n:10000
PSMC5   10000 perm   2 sec   (5457 perm/sec)   p_kst 4.444000e-01   p_cons 1.757000e-01   p_joint 3.737000e-01

Outputting figure to mutsig2_images.part000000000139/PSMC5.6_1269_10000_0.4444_0.1757_0.3737.png
                gene_name: PSMC5
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 20 percent done.
PRTG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.905489e-02	ci left: 1.550240e-01	ci right 1.695733e-01	k: 1622	n:10000
Cons ci ratio: 2.821473e-02	ci left: 6.493117e-01	ci right 6.679958e-01	k: 6587	n:10000
KS ci ratio: 1.467453e-01	ci left: 6.169346e-02	ci right 7.156083e-02	k: 665	n:10000
PRTG   10000 perm   2 sec   (4533 perm/sec)   p_kst 6.650000e-02   p_cons 6.587000e-01   p_joint 1.622000e-01

Joint ci ratio: 6.840080e-02	ci left: 1.362042e-01	ci right 1.459004e-01	k: 2820	n:20000
Cons ci ratio: 1.900979e-02	ci left: 6.735848e-01	ci right 6.865628e-01	k: 13602	n:20000
KS ci ratio: 1.027377e-01	ci left: 6.435382e-02	ci right 7.137245e-02	k: 1356	n:20000
PRTG   20000 perm   5 sec   (4183 perm/sec)   p_kst 6.780000e-02   p_cons 6.801000e-01   p_joint 1.410000e-01

Joint ci ratio: 5.016170e-02	ci left: 1.648739e-01	ci right 1.733903e-01	k: 5073	n:30000
Cons ci ratio: 1.590103e-02	ci left: 6.641442e-01	ci right 6.748229e-01	k: 20085	n:30000
KS ci ratio: 8.548467e-02	ci left: 6.269323e-02	ci right 6.832461e-02	k: 1964	n:30000
PRTG   30000 perm   8 sec   (3733 perm/sec)   p_kst 6.546667e-02   p_cons 6.695000e-01   p_joint 1.691000e-01

Outputting figure to mutsig2_images.part000000000139/PRTG.5_3533_30000_0.065467_0.6695_0.1691.png
                gene_name: PRTG
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 22 percent done.
PSD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.425851e-02	ci left: 8.767431e-01	ci right 8.894328e-01	k: 8832	n:10000
Cons ci ratio: 1.166602e-02	ci left: 9.131707e-01	ci right 9.239840e-01	k: 9187	n:10000
KS ci ratio: 3.041956e-02	ci left: 6.145218e-01	ci right 6.336059e-01	k: 6241	n:10000
PSD   10000 perm   2 sec   (4310 perm/sec)   p_kst 6.241000e-01   p_cons 9.187000e-01   p_joint 8.832000e-01

Outputting figure to mutsig2_images.part000000000139/PSD.5_3139_10000_0.6241_0.9187_0.8832.png
                gene_name: PSD
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 24 percent done.
PSG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.382151e-02	ci left: 5.634356e-01	ci right 5.829217e-01	k: 5732	n:10000
KS ci ratio: 5.260673e-03	ci left: 9.796277e-01	ci right 9.848860e-01	k: 9824	n:10000
PSG3   10000 perm   2 sec   (4865 perm/sec)   p_kst 9.824000e-01   p_cons 5.732000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PSG3.5_1311_10000_0.9824_0.5732_1.png
                gene_name: PSG3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
PSG7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.063385e-02	ci left: 6.112064e-01	ci right 6.303232e-01	k: 6208	n:10000
Cons ci ratio: 5.321015e-02	ci left: 3.423355e-01	ci right 3.611510e-01	k: 3517	n:10000
KS ci ratio: 3.802803e-02	ci left: 5.052515e-01	ci right 5.249398e-01	k: 5151	n:10000
PSG7   10000 perm   2 sec   (4926 perm/sec)   p_kst 5.151000e-01   p_cons 3.517000e-01   p_joint 6.208000e-01

Outputting figure to mutsig2_images.part000000000139/PSG7.5_1284_10000_0.5151_0.3517_0.6208.png
                gene_name: PSG7
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 27 percent done.
PRSS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.792695e-02	ci left: 3.049087e-01	ci right 3.231997e-01	k: 3140	n:10000
Cons ci ratio: 1.872701e-02	ci left: 8.064357e-01	ci right 8.217809e-01	k: 8142	n:10000
KS ci ratio: 7.182444e-02	ci left: 2.211891e-01	ci right 2.377688e-01	k: 2294	n:10000
PRSS3   10000 perm   2 sec   (6225 perm/sec)   p_kst 2.294000e-01   p_cons 8.142000e-01   p_joint 3.140000e-01

Outputting figure to mutsig2_images.part000000000139/PRSS3.4_979_10000_0.2294_0.8142_0.314.png
                gene_name: PRSS3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 29 percent done.
PRSS48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.048895e-02	ci left: 3.664936e-01	ci right 3.855787e-01	k: 3760	n:10000
Cons ci ratio: 3.161796e-02	ci left: 5.961424e-01	ci right 6.153959e-01	k: 6058	n:10000
KS ci ratio: 6.213439e-02	ci left: 2.757699e-01	ci right 2.935557e-01	k: 2846	n:10000
PRSS48   10000 perm   2 sec   (6185 perm/sec)   p_kst 2.846000e-01   p_cons 6.058000e-01   p_joint 3.760000e-01

Outputting figure to mutsig2_images.part000000000139/PRSS48.4_1007_10000_0.2846_0.6058_0.376.png
                gene_name: PRSS48
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 31 percent done.
PRX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.158221e-02	ci left: 3.565488e-01	ci right 3.755293e-01	k: 3660	n:10000
Cons ci ratio: 2.089156e-02	ci left: 7.705345e-01	ci right 7.869028e-01	k: 7788	n:10000
KS ci ratio: 7.854533e-02	ci left: 1.915089e-01	ci right 2.072666e-01	k: 1993	n:10000
PRX   10000 perm   2 sec   (4310 perm/sec)   p_kst 1.993000e-01   p_cons 7.788000e-01   p_joint 3.660000e-01

Outputting figure to mutsig2_images.part000000000139/PRX.4_4465_10000_0.1993_0.7788_0.366.png
                gene_name: PRX
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 33 percent done.
PSAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.482342e-02	ci left: 3.289257e-01	ci right 3.475686e-01	k: 3382	n:10000
Cons ci ratio: 7.363547e-03	ci left: 9.622595e-01	ci right 9.694658e-01	k: 9660	n:10000
KS ci ratio: 8.798932e-02	ci left: 1.582644e-01	ci right 1.729310e-01	k: 1655	n:10000
PSAT1   10000 perm   2 sec   (5781 perm/sec)   p_kst 1.655000e-01   p_cons 9.660000e-01   p_joint 3.382000e-01

Outputting figure to mutsig2_images.part000000000139/PSAT1.4_1149_10000_0.1655_0.966_0.3382.png
                gene_name: PSAT1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 35 percent done.
PSG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
Cons ci ratio: 3.176417e-01	ci left: 1.261754e-02	ci right 1.747097e-02	k: 149	n:10000
KS ci ratio: 5.736711e-02	ci left: 3.090749e-01	ci right 3.274310e-01	k: 3182	n:10000
PSG1   10000 perm   2 sec   (5379 perm/sec)   p_kst 3.182000e-01   p_cons 1.490000e-02   p_joint 2.820000e-02

Joint ci ratio: 1.553563e-01	ci left: 2.844890e-02	ci right 3.328876e-02	k: 616	n:20000
Cons ci ratio: 2.265363e-01	ci left: 1.307791e-02	ci right 1.646531e-02	k: 294	n:20000
KS ci ratio: 4.029985e-02	ci left: 3.146306e-01	ci right 3.276214e-01	k: 6422	n:20000
PSG1   20000 perm   4 sec   (4823 perm/sec)   p_kst 3.211000e-01   p_cons 1.470000e-02   p_joint 3.080000e-02

Joint ci ratio: 1.124436e-01	ci left: 3.674009e-02	ci right 4.114977e-02	k: 1167	n:30000
Cons ci ratio: 1.844395e-01	ci left: 1.346407e-02	ci right 1.623106e-02	k: 444	n:30000
KS ci ratio: 3.272569e-02	ci left: 3.182069e-01	ci right 3.288273e-01	k: 9705	n:30000
PSG1   30000 perm   7 sec   (4608 perm/sec)   p_kst 3.235000e-01   p_cons 1.480000e-02   p_joint 3.890000e-02

Joint ci ratio: 8.563648e-02	ci left: 4.763949e-02	ci right 5.192617e-02	k: 1990	n:40000
Cons ci ratio: 1.372859e-01	ci left: 1.860214e-02	ci right 2.136817e-02	k: 798	n:40000
KS ci ratio: 2.834992e-02	ci left: 3.187914e-01	ci right 3.279842e-01	k: 12935	n:40000
PSG1   40000 perm   9 sec   (4454 perm/sec)   p_kst 3.233750e-01   p_cons 1.995000e-02   p_joint 4.975000e-02

Joint ci ratio: 9.257264e-02	ci left: 3.301509e-02	ci right 3.623923e-02	k: 1730	n:50000
Cons ci ratio: 1.239854e-01	ci left: 1.838351e-02	ci right 2.083271e-02	k: 979	n:50000
KS ci ratio: 2.526568e-02	ci left: 3.208550e-01	ci right 3.290854e-01	k: 16248	n:50000
PSG1   50000 perm   12 sec   (4334 perm/sec)   p_kst 3.249600e-01   p_cons 1.958000e-02   p_joint 3.460000e-02

Joint ci ratio: 9.144423e-02	ci left: 2.835613e-02	ci right 3.108961e-02	k: 1782	n:60000
Cons ci ratio: 1.292452e-01	ci left: 1.412325e-02	ci right 1.609073e-02	k: 905	n:60000
KS ci ratio: 2.308868e-02	ci left: 3.207540e-01	ci right 3.282630e-01	k: 19470	n:60000
PSG1   60000 perm   14 sec   (4231 perm/sec)   p_kst 3.245000e-01   p_cons 1.508333e-02   p_joint 2.970000e-02

Joint ci ratio: 7.748635e-02	ci left: 3.390305e-02	ci right 3.664994e-02	k: 2468	n:70000
Cons ci ratio: 1.183572e-01	ci left: 1.451466e-02	ci right 1.635440e-02	k: 1079	n:70000
KS ci ratio: 2.130177e-02	ci left: 3.225562e-01	ci right 3.295154e-01	k: 22822	n:70000
PSG1   70000 perm   17 sec   (4142 perm/sec)   p_kst 3.260286e-01   p_cons 1.541429e-02   p_joint 3.525714e-02

Joint ci ratio: 8.365691e-02	ci left: 2.559386e-02	ci right 2.784064e-02	k: 2136	n:80000
Cons ci ratio: 1.103634e-01	ci left: 1.466751e-02	ci right 1.639289e-02	k: 1241	n:80000
KS ci ratio: 1.991490e-02	ci left: 3.230262e-01	ci right 3.295364e-01	k: 26102	n:80000
PSG1   80000 perm   20 sec   (4059 perm/sec)   p_kst 3.262750e-01   p_cons 1.551250e-02   p_joint 2.670000e-02

Joint ci ratio: 8.643122e-02	ci left: 2.137781e-02	ci right 2.331981e-02	k: 2010	n:90000
Cons ci ratio: 1.030909e-01	ci left: 1.499538e-02	ci right 1.663604e-02	k: 1422	n:90000
KS ci ratio: 1.893311e-02	ci left: 3.195683e-01	ci right 3.256876e-01	k: 29036	n:90000
PSG1   90000 perm   23 sec   (3985 perm/sec)   p_kst 3.226222e-01   p_cons 1.580000e-02   p_joint 2.233333e-02

Joint ci ratio: 6.914412e-02	ci left: 3.006222e-02	ci right 3.222508e-02	k: 3113	n:100000
Cons ci ratio: 8.605086e-02	ci left: 1.945445e-02	ci right 2.121353e-02	k: 2032	n:100000
KS ci ratio: 1.794729e-02	ci left: 3.200719e-01	ci right 3.258783e-01	k: 32297	n:100000
PSG1   100000 perm   26 sec   (3916 perm/sec)   p_kst 3.229700e-01   p_cons 2.032000e-02   p_joint 3.113000e-02

Outputting figure to mutsig2_images.part000000000139/PSG1.4_1337_100000_0.32297_0.02032_0.03113.png
                gene_name: PSG1
               theta_stop: 0.086 
                    nperm: 100000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.032 

Current progress: 37 percent done.
PSG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.571839e-01	ci left: 9.776646e-03	ci right 1.411465e-02	k: 118	n:10000
Cons ci ratio: 6.755301e-02	ci left: 2.433161e-01	ci right 2.604287e-01	k: 2518	n:10000
KS ci ratio: 2.863014e-01	ci left: 1.576399e-02	ci right 2.112177e-02	k: 183	n:10000
PSG2   10000 perm   2 sec   (6300 perm/sec)   p_kst 1.830000e-02   p_cons 2.518000e-01   p_joint 1.180000e-02

Joint ci ratio: 1.981072e-01	ci left: 1.729574e-02	ci right 2.114584e-02	k: 383	n:20000
Cons ci ratio: 4.774858e-02	ci left: 2.459943e-01	ci right 2.580778e-01	k: 5040	n:20000
KS ci ratio: 2.070849e-01	ci left: 1.577558e-02	ci right 1.946657e-02	k: 351	n:20000
PSG2   20000 perm   4 sec   (5500 perm/sec)   p_kst 1.755000e-02   p_cons 2.520000e-01   p_joint 1.915000e-02

Joint ci ratio: 1.169449e-01	ci left: 3.398512e-02	ci right 3.823866e-02	k: 1082	n:30000
Cons ci ratio: 3.777236e-02	ci left: 2.591509e-01	ci right 2.691615e-01	k: 7924	n:30000
KS ci ratio: 1.668478e-01	ci left: 1.655765e-02	ci right 1.960336e-02	k: 541	n:30000
PSG2   30000 perm   6 sec   (5203 perm/sec)   p_kst 1.803333e-02   p_cons 2.641333e-01   p_joint 3.606667e-02

Joint ci ratio: 1.317556e-01	ci left: 2.022187e-02	ci right 2.309816e-02	k: 865	n:40000
Cons ci ratio: 3.347713e-02	ci left: 2.509826e-01	ci right 2.595529e-01	k: 10210	n:40000
KS ci ratio: 1.439550e-01	ci left: 1.688847e-02	ci right 1.953214e-02	k: 727	n:40000
PSG2   40000 perm   8 sec   (4994 perm/sec)   p_kst 1.817500e-02   p_cons 2.552500e-01   p_joint 2.162500e-02

Joint ci ratio: 9.720566e-02	ci left: 2.996674e-02	ci right 3.304796e-02	k: 1574	n:50000
Cons ci ratio: 3.010081e-02	ci left: 2.494526e-01	ci right 2.570961e-01	k: 12663	n:50000
KS ci ratio: 1.287575e-01	ci left: 1.702698e-02	ci right 1.938942e-02	k: 909	n:50000
PSG2   50000 perm   10 sec   (4835 perm/sec)   p_kst 1.818000e-02   p_cons 2.532600e-01   p_joint 3.148000e-02

Joint ci ratio: 8.150973e-02	ci left: 3.560175e-02	ci right 3.864323e-02	k: 2226	n:60000
Cons ci ratio: 2.755562e-02	ci left: 2.487289e-01	ci right 2.556951e-01	k: 15132	n:60000
KS ci ratio: 1.172117e-01	ci left: 1.722635e-02	ci right 1.938727e-02	k: 1097	n:60000
PSG2   60000 perm   13 sec   (4709 perm/sec)   p_kst 1.828333e-02   p_cons 2.522000e-01   p_joint 3.710000e-02

Joint ci ratio: 6.672691e-02	ci left: 4.541573e-02	ci right 4.856482e-02	k: 3288	n:70000
Cons ci ratio: 2.551655e-02	ci left: 2.489150e-01	ci right 2.553627e-01	k: 17649	n:70000
KS ci ratio: 1.077907e-01	ci left: 1.754244e-02	ci right 1.955489e-02	k: 1297	n:70000
PSG2   70000 perm   15 sec   (4589 perm/sec)   p_kst 1.852857e-02   p_cons 2.521286e-01   p_joint 4.697143e-02

Joint ci ratio: 6.245099e-02	ci left: 4.546976e-02	ci right 4.841321e-02	k: 3754	n:80000
Cons ci ratio: 2.385466e-02	ci left: 2.493429e-01	ci right 2.553751e-01	k: 20188	n:80000
KS ci ratio: 1.010524e-01	ci left: 1.752872e-02	ci right 1.940643e-02	k: 1476	n:80000
PSG2   80000 perm   18 sec   (4405 perm/sec)   p_kst 1.845000e-02   p_cons 2.523500e-01   p_joint 4.692500e-02

Joint ci ratio: 6.612716e-02	ci left: 3.633377e-02	ci right 3.882948e-02	k: 3381	n:90000
Cons ci ratio: 2.247824e-02	ci left: 2.497195e-01	ci right 2.554076e-01	k: 22730	n:90000
KS ci ratio: 9.540855e-02	ci left: 1.753198e-02	ci right 1.929926e-02	k: 1656	n:90000
PSG2   90000 perm   21 sec   (4295 perm/sec)   p_kst 1.840000e-02   p_cons 2.525556e-01   p_joint 3.756667e-02

Outputting figure to mutsig2_images.part000000000139/PSG2.4_1028_90000_0.0184_0.25256_0.037567.png
                gene_name: PSG2
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 39 percent done.
PSMB9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.632823e-02	ci left: 2.006723e-01	ci right 2.166978e-01	k: 2086	n:10000
Cons ci ratio: 1.313571e-02	ci left: 8.930299e-01	ci right 9.049365e-01	k: 8991	n:10000
KS ci ratio: 9.838216e-02	ci left: 1.302192e-01	ci right 1.437930e-01	k: 1369	n:10000
PSMB9   10000 perm   2 sec   (4908 perm/sec)   p_kst 1.369000e-01   p_cons 8.991000e-01   p_joint 2.086000e-01

Outputting figure to mutsig2_images.part000000000139/PSMB9.4_684_10000_0.1369_0.8991_0.2086.png
                gene_name: PSMB9
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 41 percent done.
PSMD12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.146865e-01	ci left: 9.857012e-02	ci right 1.106613e-01	k: 1045	n:10000
Cons ci ratio: 1.558433e-01	ci left: 5.484605e-02	ci right 6.421259e-02	k: 594	n:10000
KS ci ratio: 8.033598e-02	ci left: 1.845176e-01	ci right 2.000620e-01	k: 1922	n:10000
PSMD12   10000 perm   2 sec   (5022 perm/sec)   p_kst 1.922000e-01   p_cons 5.940000e-02   p_joint 1.045000e-01

Joint ci ratio: 1.151709e-01	ci left: 5.158846e-02	ci right 5.794177e-02	k: 1094	n:20000
Cons ci ratio: 1.090359e-01	ci left: 5.738108e-02	ci right 6.404735e-02	k: 1213	n:20000
KS ci ratio: 5.720308e-02	ci left: 1.846823e-01	ci right 1.956079e-01	k: 3802	n:20000
PSMD12   20000 perm   4 sec   (4680 perm/sec)   p_kst 1.901000e-01   p_cons 6.065000e-02   p_joint 5.470000e-02

Joint ci ratio: 8.232350e-02	ci left: 6.736673e-02	ci right 7.318349e-02	k: 2107	n:30000
Cons ci ratio: 8.957925e-02	ci left: 5.730604e-02	ci right 6.271289e-02	k: 1799	n:30000
KS ci ratio: 4.550099e-02	ci left: 1.938009e-01	ci right 2.028576e-01	k: 5949	n:30000
PSMD12   30000 perm   7 sec   (4478 perm/sec)   p_kst 1.983000e-01   p_cons 5.996667e-02   p_joint 7.023333e-02

Outputting figure to mutsig2_images.part000000000139/PSMD12.4_1415_30000_0.1983_0.059967_0.070233.png
                gene_name: PSMD12
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.073 

Current progress: 43 percent done.
PSMD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.457788e-02	ci left: 7.088662e-01	ci right 7.266068e-01	k: 7178	n:10000
KS ci ratio: 2.705609e-02	ci left: 6.680363e-01	ci right 6.864603e-01	k: 6773	n:10000
PSMD2   10000 perm   2 sec   (4976 perm/sec)   p_kst 6.773000e-01   p_cons 7.178000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PSMD2.4_2811_10000_0.6773_0.7178_1.png
                gene_name: PSMD2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
PRRX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.861921e-02	ci left: 1.912134e-01	ci right 2.069623e-01	k: 1990	n:10000
Cons ci ratio: 3.572608e-02	ci left: 5.363798e-01	ci right 5.559932e-01	k: 5462	n:10000
KS ci ratio: 1.631092e-01	ci left: 5.013112e-02	ci right 5.913054e-02	k: 545	n:10000
PRRX1   10000 perm   2 sec   (6366 perm/sec)   p_kst 5.450000e-02   p_cons 5.462000e-01   p_joint 1.990000e-01

Joint ci ratio: 6.430145e-02	ci left: 1.516378e-01	ci right 1.617622e-01	k: 3133	n:20000
Cons ci ratio: 2.526127e-02	ci left: 5.393189e-01	ci right 5.531677e-01	k: 10925	n:20000
KS ci ratio: 1.167009e-01	ci left: 5.027556e-02	ci right 5.655507e-02	k: 1067	n:20000
PRRX1   20000 perm   4 sec   (5185 perm/sec)   p_kst 5.335000e-02   p_cons 5.462500e-01   p_joint 1.566500e-01

Joint ci ratio: 6.527890e-02	ci left: 1.037864e-01	ci right 1.108232e-01	k: 3218	n:30000
Cons ci ratio: 2.065325e-02	ci left: 5.399448e-01	ci right 5.512464e-01	k: 16368	n:30000
KS ci ratio: 9.588875e-02	ci left: 5.023097e-02	ci right 5.532274e-02	k: 1582	n:30000
PRRX1   30000 perm   7 sec   (4250 perm/sec)   p_kst 5.273333e-02   p_cons 5.456000e-01   p_joint 1.072667e-01

Outputting figure to mutsig2_images.part000000000139/PRRX1.3_813_30000_0.052733_0.5456_0.10727.png
                gene_name: PRRX1
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 47 percent done.
PRSS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.228605e-02	ci left: 4.522906e-01	ci right 4.719315e-01	k: 4621	n:10000
Cons ci ratio: 3.308762e-02	ci left: 5.741659e-01	ci right 5.935853e-01	k: 5839	n:10000
KS ci ratio: 4.987073e-02	ci left: 3.722635e-01	ci right 3.914054e-01	k: 3818	n:10000
PRSS1   10000 perm   2 sec   (6266 perm/sec)   p_kst 3.818000e-01   p_cons 5.839000e-01   p_joint 4.621000e-01

Outputting figure to mutsig2_images.part000000000139/PRSS1.3_764_10000_0.3818_0.5839_0.4621.png
                gene_name: PRSS1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 49 percent done.
PRSS23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.570673e-02	ci left: 8.547786e-01	ci right 8.684100e-01	k: 8617	n:10000
Cons ci ratio: 1.031915e-01	ci left: 1.195555e-01	ci right 1.326632e-01	k: 1260	n:10000
KS ci ratio: 2.089156e-02	ci left: 7.705345e-01	ci right 7.869028e-01	k: 7788	n:10000
PRSS23   10000 perm   2 sec   (6234 perm/sec)   p_kst 7.788000e-01   p_cons 1.260000e-01   p_joint 8.617000e-01

Joint ci ratio: 1.248952e-02	ci left: 8.259863e-01	ci right 8.364172e-01	k: 16625	n:20000
Cons ci ratio: 7.579852e-02	ci left: 1.134614e-01	ci right 1.224500e-01	k: 2358	n:20000
KS ci ratio: 1.483676e-02	ci left: 7.714687e-01	ci right 7.830505e-01	k: 15546	n:20000
PRSS23   20000 perm   4 sec   (5362 perm/sec)   p_kst 7.773000e-01   p_cons 1.179000e-01   p_joint 8.312500e-01

Outputting figure to mutsig2_images.part000000000139/PRSS23.3_1156_20000_0.7773_0.1179_0.83125.png
                gene_name: PRSS23
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 51 percent done.
PSD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.002142e-02	ci left: 2.899374e-01	ci right 3.079799e-01	k: 2989	n:10000
Cons ci ratio: 6.679098e-02	ci left: 2.475672e-01	ci right 2.647751e-01	k: 2561	n:10000
KS ci ratio: 7.463647e-02	ci left: 2.080667e-01	ci right 2.242990e-01	k: 2161	n:10000
PSD4   10000 perm   2 sec   (5053 perm/sec)   p_kst 2.161000e-01   p_cons 2.561000e-01   p_joint 2.989000e-01

Outputting figure to mutsig2_images.part000000000139/PSD4.3_3235_10000_0.2161_0.2561_0.2989.png
                gene_name: PSD4
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 53 percent done.
PSEN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.793559e-02	ci left: 1.939715e-01	ci right 2.098025e-01	k: 2018	n:10000
Cons ci ratio: 5.091111e-02	ci left: 3.626146e-01	ci right 3.816599e-01	k: 3721	n:10000
KS ci ratio: 8.098835e-02	ci left: 1.820569e-01	ci right 1.975242e-01	k: 1897	n:10000
PSEN1   10000 perm   2 sec   (5081 perm/sec)   p_kst 1.897000e-01   p_cons 3.721000e-01   p_joint 2.018000e-01

Outputting figure to mutsig2_images.part000000000139/PSEN1.3_1444_10000_0.1897_0.3721_0.2018.png
                gene_name: PSEN1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 55 percent done.
PSG6
Processing conservation and coverage...
Processing mutations... 
Skipping 2 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 57 percent done.
PSMA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.326741e-03	ci left: 9.714304e-01	ci right 9.776890e-01	k: 9747	n:10000
Cons ci ratio: 2.909192e-02	ci left: 6.353290e-01	ci right 6.541866e-01	k: 6448	n:10000
KS ci ratio: 1.428612e-02	ci left: 8.763339e-01	ci right 8.890423e-01	k: 8828	n:10000
PSMA3   10000 perm   2 sec   (5985 perm/sec)   p_kst 8.828000e-01   p_cons 6.448000e-01   p_joint 9.747000e-01

Outputting figure to mutsig2_images.part000000000139/PSMA3.3_812_10000_0.8828_0.6448_0.9747.png
                gene_name: PSMA3
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 59 percent done.
PSMA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.788029e-02	ci left: 8.202549e-01	ci right 8.351537e-01	k: 8278	n:10000
KS ci ratio: 7.239686e-03	ci left: 9.634151e-01	ci right 9.705095e-01	k: 9671	n:10000
PSMA8   10000 perm   2 sec   (5333 perm/sec)   p_kst 9.671000e-01   p_cons 8.278000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PSMA8.3_799_10000_0.9671_0.8278_1.png
                gene_name: PSMA8
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
PSMB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.388268e-03	ci left: 9.950195e-01	ci right 9.974774e-01	k: 9964	n:10000
KS ci ratio: 2.100063e-02	ci left: 7.687114e-01	ci right 7.851269e-01	k: 7770	n:10000
PSMB8   10000 perm   2 sec   (6231 perm/sec)   p_kst 7.770000e-01   p_cons 9.964000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PSMB8.3_994_10000_0.777_0.9964_1.png
                gene_name: PSMB8
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
PSMC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.221543e-02	ci left: 7.483685e-01	ci right 7.652816e-01	k: 7569	n:10000
KS ci ratio: 3.755887e-02	ci left: 5.114541e-01	ci right 5.311335e-01	k: 5213	n:10000
PSMC3   10000 perm   2 sec   (6060 perm/sec)   p_kst 5.213000e-01   p_cons 7.569000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PSMC3.3_1368_10000_0.5213_0.7569_1.png
                gene_name: PSMC3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
PSMD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.787044e-02	ci left: 6.548469e-01	ci right 6.734574e-01	k: 6642	n:10000
KS ci ratio: 3.745367e-02	ci left: 5.128549e-01	ci right 5.325319e-01	k: 5227	n:10000
PSMD11   10000 perm   2 sec   (5773 perm/sec)   p_kst 5.227000e-01   p_cons 6.642000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PSMD11.3_1321_10000_0.5227_0.6642_1.png
                gene_name: PSMD11
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
PRRT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.325811e-02	ci left: 5.716584e-01	ci right 5.910942e-01	k: 5814	n:10000
KS ci ratio: 4.584033e-02	ci left: 4.125930e-01	ci right 4.320522e-01	k: 4223	n:10000
PRRT3   10000 perm   2 sec   (5570 perm/sec)   p_kst 4.223000e-01   p_cons 5.814000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PRRT3.2_2958_10000_0.4223_0.5814_1.png
                gene_name: PRRT3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
PRSS16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.716280e-01	ci left: 1.762636e-02	ci right 2.325787e-02	k: 203	n:10000
Cons ci ratio: 1.276264e-01	ci left: 8.067319e-02	ci right 9.176924e-02	k: 861	n:10000
KS ci ratio: 3.650251e-01	ci left: 9.321618e-03	ci right 1.357016e-02	k: 113	n:10000
PRSS16   10000 perm   2 sec   (6402 perm/sec)   p_kst 1.130000e-02   p_cons 8.610000e-02   p_joint 2.030000e-02

Joint ci ratio: 2.156633e-01	ci left: 1.449598e-02	ci right 1.804667e-02	k: 324	n:20000
Cons ci ratio: 9.195033e-02	ci left: 7.945708e-02	ci right 8.716457e-02	k: 1665	n:20000
KS ci ratio: 2.628223e-01	ci left: 9.554158e-03	ci right 1.249060e-02	k: 219	n:20000
PRSS16   20000 perm   4 sec   (5208 perm/sec)   p_kst 1.095000e-02   p_cons 8.325000e-02   p_joint 1.620000e-02

Joint ci ratio: 1.310347e-01	ci left: 2.706564e-02	ci right 3.089297e-02	k: 868	n:30000
Cons ci ratio: 7.476801e-02	ci left: 8.078655e-02	ci right 8.709430e-02	k: 2517	n:30000
KS ci ratio: 2.136156e-01	ci left: 9.913730e-03	ci right 1.231569e-02	k: 332	n:30000
PRSS16   30000 perm   6 sec   (5002 perm/sec)   p_kst 1.106667e-02   p_cons 8.390000e-02   p_joint 2.893333e-02

Joint ci ratio: 1.151100e-01	ci left: 2.655092e-02	ci right 2.981806e-02	k: 1126	n:40000
Cons ci ratio: 6.496621e-02	ci left: 8.070830e-02	ci right 8.615236e-02	k: 3336	n:40000
KS ci ratio: 1.862743e-01	ci left: 9.929432e-03	ci right 1.199249e-02	k: 437	n:40000
PRSS16   40000 perm   8 sec   (4865 perm/sec)   p_kst 1.092500e-02   p_cons 8.340000e-02   p_joint 2.815000e-02

Joint ci ratio: 1.034404e-01	ci left: 2.647395e-02	ci right 2.938121e-02	k: 1395	n:50000
Cons ci ratio: 5.812477e-02	ci left: 8.095130e-02	ci right 8.581719e-02	k: 4168	n:50000
KS ci ratio: 1.687251e-01	ci left: 9.778348e-03	ci right 1.159913e-02	k: 533	n:50000
PRSS16   50000 perm   11 sec   (4745 perm/sec)   p_kst 1.066000e-02   p_cons 8.336000e-02   p_joint 2.790000e-02

Joint ci ratio: 1.118798e-01	ci left: 1.892713e-02	ci right 2.118629e-02	k: 1202	n:60000
Cons ci ratio: 5.303620e-02	ci left: 8.123248e-02	ci right 8.567458e-02	k: 5006	n:60000
KS ci ratio: 1.546108e-01	ci left: 9.779948e-03	ci right 1.143457e-02	k: 635	n:60000
PRSS16   60000 perm   13 sec   (4592 perm/sec)   p_kst 1.058333e-02   p_cons 8.343333e-02   p_joint 2.003333e-02

Joint ci ratio: 1.260460e-01	ci left: 1.276889e-02	ci right 1.450034e-02	k: 953	n:70000
Cons ci ratio: 5.895058e-02	ci left: 5.766011e-02	ci right 6.117652e-02	k: 4158	n:70000
KS ci ratio: 1.440274e-01	ci left: 9.716777e-03	ci right 1.123850e-02	k: 732	n:70000
PRSS16   70000 perm   16 sec   (4474 perm/sec)   p_kst 1.045714e-02   p_cons 5.940000e-02   p_joint 1.361429e-02

Joint ci ratio: 1.322519e-01	ci left: 1.014366e-02	ci right 1.159214e-02	k: 868	n:80000
Cons ci ratio: 5.528650e-02	ci left: 5.748804e-02	ci right 6.076903e-02	k: 4729	n:80000
KS ci ratio: 1.342175e-01	ci left: 9.841470e-03	ci right 1.126936e-02	k: 843	n:80000
PRSS16   80000 perm   19 sec   (4277 perm/sec)   p_kst 1.053750e-02   p_cons 5.911250e-02   p_joint 1.085000e-02

Joint ci ratio: 1.255760e-01	ci left: 1.003808e-02	ci right 1.139374e-02	k: 963	n:90000
Cons ci ratio: 5.234587e-02	ci left: 5.711810e-02	ci right 6.019931e-02	k: 5278	n:90000
KS ci ratio: 1.278753e-01	ci left: 9.672157e-03	ci right 1.100413e-02	k: 929	n:90000
PRSS16   90000 perm   22 sec   (4067 perm/sec)   p_kst 1.032222e-02   p_cons 5.864444e-02   p_joint 1.070000e-02

Joint ci ratio: 1.009998e-01	ci left: 1.408994e-02	ci right 1.559839e-02	k: 1483	n:100000
Cons ci ratio: 4.978855e-02	ci left: 5.691488e-02	ci right 5.983080e-02	k: 5836	n:100000
KS ci ratio: 1.215114e-01	ci left: 9.673761e-03	ci right 1.093489e-02	k: 1029	n:100000
PRSS16   100000 perm   25 sec   (4023 perm/sec)   p_kst 1.029000e-02   p_cons 5.836000e-02   p_joint 1.483000e-02

Joint ci ratio: 8.786517e-02	ci left: 1.699123e-02	ci right 1.856162e-02	k: 1954	n:110000
Cons ci ratio: 4.758063e-02	ci left: 5.673368e-02	ci right 5.950786e-02	k: 6392	n:110000
KS ci ratio: 1.163244e-01	ci left: 9.623445e-03	ci right 1.082077e-02	k: 1123	n:110000
PRSS16   110000 perm   28 sec   (3925 perm/sec)   p_kst 1.020909e-02   p_cons 5.810909e-02   p_joint 1.776364e-02

Joint ci ratio: 1.002748e-01	ci left: 1.194404e-02	ci right 1.321301e-02	k: 1508	n:120000
Cons ci ratio: 4.559730e-02	ci left: 5.669227e-02	ci right 5.934581e-02	k: 6961	n:120000
KS ci ratio: 1.114724e-01	ci left: 9.631090e-03	ci right 1.077610e-02	k: 1223	n:120000
PRSS16   120000 perm   31 sec   (3852 perm/sec)   p_kst 1.019167e-02   p_cons 5.800833e-02   p_joint 1.256667e-02

Joint ci ratio: 9.078616e-02	ci left: 1.349617e-02	ci right 1.478717e-02	k: 1837	n:130000
Cons ci ratio: 4.382441e-02	ci left: 5.670495e-02	ci right 5.925327e-02	k: 7536	n:130000
KS ci ratio: 1.066935e-01	ci left: 9.728300e-03	ci right 1.083217e-02	k: 1335	n:130000
PRSS16   130000 perm   34 sec   (3813 perm/sec)   p_kst 1.026923e-02   p_cons 5.796923e-02   p_joint 1.413077e-02

Joint ci ratio: 8.722453e-02	ci left: 1.360072e-02	ci right 1.484809e-02	k: 1990	n:140000
Cons ci ratio: 4.219929e-02	ci left: 5.683070e-02	ci right 5.928765e-02	k: 8127	n:140000
KS ci ratio: 1.025883e-01	ci left: 9.791636e-03	ci right 1.085736e-02	k: 1444	n:140000
PRSS16   140000 perm   37 sec   (3769 perm/sec)   p_kst 1.031429e-02   p_cons 5.805000e-02   p_joint 1.421429e-02

Joint ci ratio: 8.461392e-02	ci left: 1.350941e-02	ci right 1.470948e-02	k: 2115	n:150000
Cons ci ratio: 4.075739e-02	ci left: 5.690157e-02	ci right 5.927555e-02	k: 8712	n:150000
KS ci ratio: 9.898750e-02	ci left: 9.834224e-03	ci right 1.086483e-02	k: 1551	n:150000
PRSS16   150000 perm   40 sec   (3722 perm/sec)   p_kst 1.034000e-02   p_cons 5.808000e-02   p_joint 1.410000e-02

Outputting figure to mutsig2_images.part000000000139/PRSS16.2_1593_150000_0.01034_0.05808_0.0141.png
                gene_name: PRSS16
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0098 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.059 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 71 percent done.
PRSS22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.882622e-02	ci left: 2.983636e-01	ci right 3.165487e-01	k: 3074	n:10000
Cons ci ratio: 3.542450e-02	ci left: 5.405866e-01	ci right 5.601840e-01	k: 5504	n:10000
KS ci ratio: 2.225082e-01	ci left: 2.674401e-02	ci right 3.353336e-02	k: 300	n:10000
PRSS22   10000 perm   2 sec   (6565 perm/sec)   p_kst 3.000000e-02   p_cons 5.504000e-01   p_joint 3.074000e-01

Joint ci ratio: 3.294743e-02	ci left: 4.075606e-01	ci right 4.212643e-01	k: 8288	n:20000
Cons ci ratio: 2.521036e-02	ci left: 5.403200e-01	ci right 5.541662e-01	k: 10945	n:20000
KS ci ratio: 1.589819e-01	ci left: 2.715054e-02	ci right 3.188756e-02	k: 589	n:20000
PRSS22   20000 perm   4 sec   (5709 perm/sec)   p_kst 2.945000e-02   p_cons 5.472500e-01   p_joint 4.144000e-01

Joint ci ratio: 4.682546e-02	ci left: 1.849137e-01	ci right 1.938132e-01	k: 5680	n:30000
Cons ci ratio: 2.051756e-02	ci left: 5.432147e-01	ci right 5.545092e-01	k: 16466	n:30000
KS ci ratio: 1.293580e-01	ci left: 2.777574e-02	ci right 3.164938e-02	k: 890	n:30000
PRSS22   30000 perm   6 sec   (5364 perm/sec)   p_kst 2.966667e-02   p_cons 5.488667e-01   p_joint 1.893333e-01

Joint ci ratio: 4.418365e-02	ci left: 1.607798e-01	ci right 1.680690e-01	k: 6576	n:40000
Cons ci ratio: 1.778656e-02	ci left: 5.434822e-01	ci right 5.532608e-01	k: 21935	n:40000
KS ci ratio: 1.131618e-01	ci left: 2.747453e-02	ci right 3.079429e-02	k: 1164	n:40000
PRSS22   40000 perm   8 sec   (5148 perm/sec)   p_kst 2.910000e-02   p_cons 5.483750e-01   p_joint 1.644000e-01

Joint ci ratio: 3.971949e-02	ci left: 1.597919e-01	ci right 1.662873e-01	k: 8151	n:50000
Cons ci ratio: 1.598467e-02	ci left: 5.416434e-01	ci right 5.503912e-01	k: 27301	n:50000
KS ci ratio: 1.011526e-01	ci left: 2.768309e-02	ci right 3.065191e-02	k: 1457	n:50000
PRSS22   50000 perm   10 sec   (5001 perm/sec)   p_kst 2.914000e-02   p_cons 5.460200e-01   p_joint 1.630200e-01

Joint ci ratio: 3.625526e-02	ci left: 1.601022e-01	ci right 1.660305e-01	k: 9783	n:60000
Cons ci ratio: 1.462598e-02	ci left: 5.408716e-01	ci right 5.488574e-01	k: 32692	n:60000
KS ci ratio: 9.249199e-02	ci left: 2.772065e-02	ci right 3.042515e-02	k: 1743	n:60000
PRSS22   60000 perm   12 sec   (4862 perm/sec)   p_kst 2.905000e-02   p_cons 5.448667e-01   p_joint 1.630500e-01

Outputting figure to mutsig2_images.part000000000139/PRSS22.2_978_60000_0.02905_0.54487_0.16305.png
                gene_name: PRSS22
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 73 percent done.
PRSS36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.971200e-03	ci left: 9.344406e-01	ci right 9.439015e-01	k: 9393	n:10000
Cons ci ratio: 2.847868e-02	ci left: 6.450858e-01	ci right 6.638241e-01	k: 6545	n:10000
KS ci ratio: 3.664360e-02	ci left: 5.237637e-01	ci right 5.434167e-01	k: 5336	n:10000
PRSS36   10000 perm   2 sec   (5752 perm/sec)   p_kst 5.336000e-01   p_cons 6.545000e-01   p_joint 9.393000e-01

Outputting figure to mutsig2_images.part000000000139/PRSS36.2_2628_10000_0.5336_0.6545_0.9393.png
                gene_name: PRSS36
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 75 percent done.
PRSS37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.609637e-02	ci left: 3.187994e-01	ci right 3.373008e-01	k: 3280	n:10000
KS ci ratio: 1.456751e-02	ci left: 8.721407e-01	ci right 8.850379e-01	k: 8787	n:10000
PRSS37   10000 perm   2 sec   (6478 perm/sec)   p_kst 8.787000e-01   p_cons 3.280000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PRSS37.2_728_10000_0.8787_0.328_1.png
                gene_name: PRSS37
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
PRSS38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.109475e-02	ci left: 9.205911e-01	ci right 9.309592e-01	k: 9259	n:10000
KS ci ratio: 7.341162e-03	ci left: 9.624696e-01	ci right 9.696556e-01	k: 9662	n:10000
PRSS38   10000 perm   2 sec   (6211 perm/sec)   p_kst 9.662000e-01   p_cons 9.259000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PRSS38.2_1001_10000_0.9662_0.9259_1.png
                gene_name: PRSS38
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
PRSS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.343912e-02	ci left: 1.732025e-01	ci right 1.883840e-01	k: 1807	n:10000
Cons ci ratio: 1.092784e-01	ci left: 1.077365e-01	ci right 1.202894e-01	k: 1139	n:10000
KS ci ratio: 4.388548e-02	ci left: 4.339301e-01	ci right 4.535027e-01	k: 4437	n:10000
PRSS8   10000 perm   2 sec   (6580 perm/sec)   p_kst 4.437000e-01   p_cons 1.139000e-01   p_joint 1.807000e-01

Joint ci ratio: 5.672470e-02	ci left: 1.872537e-01	ci right 1.982358e-01	k: 3854	n:20000
Cons ci ratio: 7.838310e-02	ci left: 1.067765e-01	ci right 1.155369e-01	k: 2222	n:20000
KS ci ratio: 3.129662e-02	ci left: 4.326555e-01	ci right 4.464621e-01	k: 8791	n:20000
PRSS8   20000 perm   4 sec   (5668 perm/sec)   p_kst 4.395500e-01   p_cons 1.111000e-01   p_joint 1.927000e-01

Outputting figure to mutsig2_images.part000000000139/PRSS8.2_1056_20000_0.43955_0.1111_0.1927.png
                gene_name: PRSS8
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 80 percent done.
PSAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.120912e-02	ci left: 6.023677e-01	ci right 6.215670e-01	k: 6120	n:10000
KS ci ratio: 3.961172e-02	ci left: 4.848535e-01	ci right 5.045496e-01	k: 4947	n:10000
PSAP   10000 perm   2 sec   (6398 perm/sec)   p_kst 4.947000e-01   p_cons 6.120000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PSAP.2_1647_10000_0.4947_0.612_1.png
                gene_name: PSAP
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
PSAPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.873855e-02	ci left: 3.831109e-01	ci right 4.023516e-01	k: 3927	n:10000
Cons ci ratio: 9.759959e-03	ci left: 9.369275e-01	ci right 9.462132e-01	k: 9417	n:10000
KS ci ratio: 2.276270e-01	ci left: 2.551545e-02	ci right 3.216281e-02	k: 287	n:10000
PSAPL1   10000 perm   2 sec   (6080 perm/sec)   p_kst 2.870000e-02   p_cons 9.417000e-01   p_joint 3.927000e-01

Joint ci ratio: 4.454780e-02	ci left: 2.728412e-01	ci right 2.853230e-01	k: 5581	n:20000
Cons ci ratio: 6.924156e-03	ci left: 9.379526e-01	ci right 9.445184e-01	k: 18826	n:20000
KS ci ratio: 1.593999e-01	ci left: 2.700636e-02	ci right 3.173179e-02	k: 586	n:20000
PSAPL1   20000 perm   4 sec   (5347 perm/sec)   p_kst 2.930000e-02   p_cons 9.413000e-01   p_joint 2.790500e-01

Joint ci ratio: 1.838486e-02	ci left: 5.968690e-01	ci right 6.079778e-01	k: 18073	n:30000
Cons ci ratio: 5.251564e-03	ci left: 9.463818e-01	ci right 9.513974e-01	k: 28468	n:30000
KS ci ratio: 1.292087e-01	ci left: 2.784031e-02	ci right 3.171813e-02	k: 892	n:30000
PSAPL1   30000 perm   6 sec   (5050 perm/sec)   p_kst 2.973333e-02   p_cons 9.489333e-01   p_joint 6.024333e-01

Joint ci ratio: 2.696020e-02	ci left: 3.410879e-01	ci right 3.504345e-01	k: 13830	n:40000
Cons ci ratio: 4.511622e-03	ci left: 9.475127e-01	ci right 9.518217e-01	k: 37988	n:40000
KS ci ratio: 1.116891e-01	ci left: 2.820403e-02	ci right 3.156468e-02	k: 1194	n:40000
PSAPL1   40000 perm   8 sec   (4887 perm/sec)   p_kst 2.985000e-02   p_cons 9.497000e-01   p_joint 3.457500e-01

Joint ci ratio: 2.487804e-02	ci left: 3.276527e-01	ci right 3.359268e-01	k: 16589	n:50000
Cons ci ratio: 4.023323e-03	ci left: 9.480330e-01	ci right 9.518745e-01	k: 47499	n:50000
KS ci ratio: 9.900486e-02	ci left: 2.889293e-02	ci right 3.192191e-02	k: 1519	n:50000
PSAPL1   50000 perm   11 sec   (4747 perm/sec)   p_kst 3.038000e-02   p_cons 9.499800e-01   p_joint 3.317800e-01

Outputting figure to mutsig2_images.part000000000139/PSAPL1.2_1569_50000_0.03038_0.94998_0.33178.png
                gene_name: PSAPL1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 84 percent done.
PSD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.385736e-02	ci left: 7.208794e-01	ci right 7.383866e-01	k: 7297	n:10000
Cons ci ratio: 4.270515e-02	ci left: 4.473998e-01	ci right 4.670251e-01	k: 4572	n:10000
KS ci ratio: 5.627496e-02	ci left: 3.174100e-01	ci right 3.358911e-01	k: 3266	n:10000
PSD3   10000 perm   2 sec   (5414 perm/sec)   p_kst 3.266000e-01   p_cons 4.572000e-01   p_joint 7.297000e-01

Outputting figure to mutsig2_images.part000000000139/PSD3.2_3244_10000_0.3266_0.4572_0.7297.png
                gene_name: PSD3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 86 percent done.
PSEN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.917845e-02	ci left: 4.903513e-01	ci right 5.100486e-01	k: 5002	n:10000
Cons ci ratio: 1.010034e-01	ci left: 1.242496e-01	ci right 1.375662e-01	k: 1308	n:10000
KS ci ratio: 4.347016e-02	ci left: 4.386187e-01	ci right 4.582113e-01	k: 4484	n:10000
PSEN2   10000 perm   2 sec   (6274 perm/sec)   p_kst 4.484000e-01   p_cons 1.308000e-01   p_joint 5.002000e-01

Joint ci ratio: 2.773591e-02	ci left: 4.926960e-01	ci right 5.066041e-01	k: 9993	n:20000
Cons ci ratio: 7.153150e-02	ci left: 1.258605e-01	ci right 1.352472e-01	k: 2610	n:20000
KS ci ratio: 3.091525e-02	ci left: 4.386949e-01	ci right 4.525209e-01	k: 8912	n:20000
PSEN2   20000 perm   4 sec   (5454 perm/sec)   p_kst 4.456000e-01   p_cons 1.305000e-01   p_joint 4.996500e-01

Outputting figure to mutsig2_images.part000000000139/PSEN2.2_1387_20000_0.4456_0.1305_0.49965.png
                gene_name: PSEN2
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 88 percent done.
PSMA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.108126e-02	ci left: 4.666691e-01	ci right 4.863446e-01	k: 4765	n:10000
KS ci ratio: 4.563429e-02	ci left: 4.147857e-01	ci right 4.342583e-01	k: 4245	n:10000
PSMA4   10000 perm   1 sec   (6719 perm/sec)   p_kst 4.245000e-01   p_cons 4.765000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000139/PSMA4.2_818_10000_0.4245_0.4765_1.png
                gene_name: PSMA4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
PSMB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.198116e-02	ci left: 4.558845e-01	ci right 4.755355e-01	k: 4657	n:10000
Cons ci ratio: 1.353332e-01	ci left: 7.213925e-02	ci right 8.270848e-02	k: 773	n:10000
KS ci ratio: 5.048895e-02	ci left: 3.664936e-01	ci right 3.855787e-01	k: 3760	n:10000
PSMB2   10000 perm   2 sec   (6461 perm/sec)   p_kst 3.760000e-01   p_cons 7.730000e-02   p_joint 4.657000e-01

Joint ci ratio: 5.582050e-02	ci left: 1.922491e-01	ci right 2.033389e-01	k: 3955	n:20000
Cons ci ratio: 9.556323e-02	ci left: 7.387984e-02	ci right 8.134352e-02	k: 1551	n:20000
KS ci ratio: 3.556436e-02	ci left: 3.711236e-01	ci right 3.846119e-01	k: 7557	n:20000
PSMB2   20000 perm   3 sec   (5805 perm/sec)   p_kst 3.778500e-01   p_cons 7.755000e-02   p_joint 1.977500e-01

Outputting figure to mutsig2_images.part000000000139/PSMB2.2_630_20000_0.37785_0.07755_0.19775.png
                gene_name: PSMB2
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 92 percent done.
PSMB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.560377e-02	ci left: 5.380825e-01	ci right 5.576896e-01	k: 5479	n:10000
Cons ci ratio: 5.235785e-02	ci left: 3.496895e-01	ci right 3.685926e-01	k: 3591	n:10000
KS ci ratio: 1.911578e-02	ci left: 8.000395e-01	ci right 8.155808e-01	k: 8079	n:10000
PSMB5   10000 perm   2 sec   (6578 perm/sec)   p_kst 8.079000e-01   p_cons 3.591000e-01   p_joint 5.479000e-01

Outputting figure to mutsig2_images.part000000000139/PSMB5.2_893_10000_0.8079_0.3591_0.5479.png
                gene_name: PSMB5
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 94 percent done.
PSMB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.744606e-02	ci left: 8.272725e-01	ci right 8.419321e-01	k: 8347	n:10000
Cons ci ratio: 6.663364e-02	ci left: 2.484571e-01	ci right 2.656846e-01	k: 2570	n:10000
KS ci ratio: 2.331969e-02	ci left: 7.298693e-01	ci right 7.471916e-01	k: 7386	n:10000
PSMB6   10000 perm   2 sec   (6656 perm/sec)   p_kst 7.386000e-01   p_cons 2.570000e-01   p_joint 8.347000e-01

Outputting figure to mutsig2_images.part000000000139/PSMB6.2_744_10000_0.7386_0.257_0.8347.png
                gene_name: PSMB6
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 96 percent done.
PSMC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.530113e-02	ci left: 6.968606e-01	ci right 7.148193e-01	k: 7059	n:10000
Cons ci ratio: 2.097034e-02	ci left: 7.692178e-01	ci right 7.856203e-01	k: 7775	n:10000
KS ci ratio: 3.226381e-02	ci left: 5.864060e-01	ci right 6.057380e-01	k: 5961	n:10000
PSMC6   10000 perm   2 sec   (6313 perm/sec)   p_kst 5.961000e-01   p_cons 7.775000e-01   p_joint 7.059000e-01

Outputting figure to mutsig2_images.part000000000139/PSMC6.2_1268_10000_0.5961_0.7775_0.7059.png
                gene_name: PSMC6
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.71 

Current progress: 98 percent done.
PSMD13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.628610e-03	ci left: 9.896106e-01	ci right 9.932945e-01	k: 9916	n:10000
Cons ci ratio: 1.423087e-02	ci left: 8.771523e-01	ci right 8.898233e-01	k: 8836	n:10000
KS ci ratio: 1.061910e-02	ci left: 9.265789e-01	ci right 9.365679e-01	k: 9317	n:10000
PSMD13   10000 perm   2 sec   (6373 perm/sec)   p_kst 9.317000e-01   p_cons 8.836000e-01   p_joint 9.916000e-01

Outputting figure to mutsig2_images.part000000000139/PSMD13.2_1264_10000_0.9317_0.8836_0.9916.png
                gene_name: PSMD13
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000139
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 139 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1702>
Subject: Job 9894097: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1702>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000140> was used as the working directory.
Started at Sat Oct  6 00:26:10 2012
Results reported at Sat Oct  6 00:40:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000140.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000140.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 140  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000140.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    904.20 sec.
    Max Memory :      3556 MB
    Max Swap   :      5914 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
140
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 140
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 140: processing genes 12532 - 12621
Calculating significance of each gene.
Using projection method.
12532	PSMD3	6.134902e-01
12533	PSMD4	1
12534	PSMD5	7.854395e-01
12535	PSMD6	2.623212e-01
12536	PSMD7	5.183758e-01
12537	PSMD8	5.730697e-01
12538	PSMD9	4.769998e-01
12539	PSME1	1
12540	PSME2	1
12541	PSME3	8.054763e-02
12542	PSME4	5.752897e-01
12543	PSMF1	3.267627e-01
12544	PSMG1	1
12545	PSMG2	1
12546	PSMG3	1
12547	PSORS1C1	1
12548	PSORS1C2	4.445891e-01
12549	PSPC1	8.876574e-01
12550	PSPH	1
12551	PSPN	1
12552	PSRC1	7.922924e-01
12553	PSTK	6.763950e-01
12554	PSTPIP1	1
12555	PSTPIP2	8.413575e-01
12556	PTAFR	8.676852e-01
12557	PTAR1	4.028408e-01
12558	PTBP1	9.629328e-01
12559	PTBP2	2.815296e-01
12560	PTCD1	9.602279e-01
12561	PTCD2	3.250657e-02
12562	PTCD3	6.014557e-01
12563	PTCH1	6.241720e-01
12564	PTCH2	5.507677e-01
12565	PTCHD1	2.326959e-01
12566	PTCHD2	9.564730e-01
12567	PTCHD3	1.601786e-01
12568	PTCRA	2.347358e-01
12569	PTDSS1	1.690961e-02
12570	PTDSS2	1
12571	PTEN	4.420468e-04
12572	PTER	5.038584e-02
12573	PTF1A	1
12574	PTGDR	9.518738e-01
12575	PTGDS	1
12576	PTGER2	9.159388e-01
12577	PTGER3	1.615549e-02
12578	PTGER4	1
12579	PTGES	1
12580	PTGES2	1
12581	PTGES3	3.802812e-01
12582	PTGFR	2.970209e-03
12583	PTGFRN	5.021937e-01
12584	PTGIR	7.759361e-01
12585	PTGIS	9.560719e-02
In gene PTGR1 the following bins exceed PROBCAP:
    COAD-AA-3522	categ 6	N = 1026    n = 1	mu =   1.03e-07
12586	PTGR1	1.645537e-01
12587	PTGR2	4.343688e-01
12588	PTGS1	1.103315e-01
12589	PTGS2	3.701146e-01
12590	PTH	9.276286e-02
In gene PTH1R the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 1708    n = 1	mu =   8.55e-07
12591	PTH1R	5.034187e-01
12592	PTH2	2.957712e-02
12593	PTH2R	3.057239e-03
12594	PTHLH	3.560886e-01
12595	PTK2	5.948005e-01
In gene PTK2B the following bins exceed PROBCAP:
    COAD-AA-3553	categ 6	N = 3139    n = 1	mu =   1.72e-07
12596	PTK2B	9.639860e-01
12597	PTK6	1
12598	PTK7	2.874544e-01
12599	PTMA	1
12600	PTMS	2.306628e-01
12601	PTN	1.651498e-03
12602	PTOV1	4.933070e-01
12603	PTP4A1	5.490879e-01
12604	PTP4A2	6.173166e-01
12605	PTP4A3	2.360373e-01
12606	PTPDC1	1.651409e-01
12607	PTPLA	3.850678e-01
12608	PTPLAD1	7.412289e-01
12609	PTPLAD2	9.559304e-02
12610	PTPLB	1
12611	PTPMT1	2.449343e-01
12612	PTPN1	1.168988e-01
12613	PTPN11	1.702939e-01
12614	PTPN12	6.538382e-03
12615	PTPN13	6.999509e-01
12616	PTPN14	7.159756e-01
12617	PTPN18	7.249486e-01
12618	PTPN2	4.535011e-01
12619	PTPN21	7.987925e-01
12620	PTPN22	6.358213e-01
12621	PTPN23	9.600794e-01
Done

Running MutSig 2:
Scatter job 140: processing genes 12532 - 12621
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PTPN13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.081046e-01	ci left: 1.098838e-01	ci right 1.225407e-01	k: 1161	n:10000
Cons ci ratio: 2.959539e-02	ci left: 6.273859e-01	ci right 6.463343e-01	k: 6369	n:10000
KS ci ratio: 1.660239e-01	ci left: 4.840157e-02	ci right 5.726121e-02	k: 527	n:10000
PTPN13   10000 perm   3 sec   (3337 perm/sec)   p_kst 5.270000e-02   p_cons 6.369000e-01   p_joint 1.161000e-01

Joint ci ratio: 8.011688e-02	ci left: 1.026010e-01	ci right 1.112137e-01	k: 2137	n:20000
Cons ci ratio: 2.079027e-02	ci left: 6.332525e-01	ci right 6.466068e-01	k: 12799	n:20000
KS ci ratio: 1.161846e-01	ci left: 5.071313e-02	ci right 5.701737e-02	k: 1076	n:20000
PTPN13   20000 perm   9 sec   (2348 perm/sec)   p_kst 5.380000e-02   p_cons 6.399500e-01   p_joint 1.068500e-01

Joint ci ratio: 6.748386e-02	ci left: 9.767795e-02	ci right 1.045328e-01	k: 3032	n:30000
Cons ci ratio: 1.642005e-02	ci left: 6.497231e-01	ci right 6.605135e-01	k: 19654	n:30000
KS ci ratio: 9.481852e-02	ci left: 5.133870e-02	ci right 5.648146e-02	k: 1616	n:30000
PTPN13   30000 perm   12 sec   (2490 perm/sec)   p_kst 5.386667e-02   p_cons 6.551333e-01   p_joint 1.010667e-01

Outputting figure to mutsig2_images.part000000000140/PTPN13.17_7661_30000_0.053867_0.65513_0.10107.png
                gene_name: PTPN13
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.10 

Current progress: 2 percent done.
PTPN12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.534169e-02	ci left: 3.247555e-01	ci right 3.433413e-01	k: 3340	n:10000
Cons ci ratio: 3.969896e-02	ci left: 4.837540e-01	ci right 5.034497e-01	k: 4936	n:10000
KS ci ratio: 8.397822e-02	ci left: 1.713341e-01	ci right 1.864535e-01	k: 1788	n:10000
PTPN12   10000 perm   2 sec   (4628 perm/sec)   p_kst 1.788000e-01   p_cons 4.936000e-01   p_joint 3.340000e-01

Outputting figure to mutsig2_images.part000000000140/PTPN12.11_2415_10000_0.1788_0.4936_0.334.png
                gene_name: PTPN12
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 4 percent done.
PTEN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
Cons ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
KS ci ratio: 1.516850e-01	ci left: 5.783363e-02	ci right 6.742310e-02	k: 625	n:10000
PTEN   10000 perm   2 sec   (5056 perm/sec)   p_kst 6.250000e-02   p_cons 1.700000e-03   p_joint 1.060000e-02

Joint ci ratio: 3.871372e-01	ci left: 4.115134e-03	ci right 6.132872e-03	k: 101	n:20000
Cons ci ratio: 6.115581e-01	ci left: 1.429202e-03	ci right 2.722447e-03	k: 40	n:20000
KS ci ratio: 1.049967e-01	ci left: 6.171935e-02	ci right 6.860773e-02	k: 1302	n:20000
PTEN   20000 perm   4 sec   (4573 perm/sec)   p_kst 6.510000e-02   p_cons 2.000000e-03   p_joint 5.050000e-03

Joint ci ratio: 4.125772e-01	ci left: 2.383134e-03	ci right 3.649489e-03	k: 89	n:30000
Cons ci ratio: 4.933466e-01	ci left: 1.584857e-03	ci right 2.648601e-03	k: 62	n:30000
KS ci ratio: 8.944716e-02	ci left: 5.746920e-02	ci right 6.288303e-02	k: 1804	n:30000
PTEN   30000 perm   7 sec   (4389 perm/sec)   p_kst 6.013333e-02   p_cons 2.066667e-03   p_joint 2.966667e-03

Joint ci ratio: 4.150515e-01	ci left: 1.764827e-03	ci right 2.709769e-03	k: 88	n:40000
Cons ci ratio: 4.174083e-01	ci left: 1.742441e-03	ci right 2.682173e-03	k: 87	n:40000
KS ci ratio: 7.737262e-02	ci left: 5.796217e-02	ci right 6.265191e-02	k: 2411	n:40000
PTEN   40000 perm   9 sec   (4268 perm/sec)   p_kst 6.027500e-02   p_cons 2.175000e-03   p_joint 2.200000e-03

Joint ci ratio: 3.785512e-01	ci left: 1.735999e-03	ci right 2.563509e-03	k: 106	n:50000
Cons ci ratio: 3.839838e-01	ci left: 1.681740e-03	ci right 2.497801e-03	k: 103	n:50000
KS ci ratio: 6.913115e-02	ci left: 5.832746e-02	ci right 6.252376e-02	k: 3020	n:50000
PTEN   50000 perm   12 sec   (4169 perm/sec)   p_kst 6.040000e-02   p_cons 2.060000e-03   p_joint 2.120000e-03

Joint ci ratio: 2.795400e-01	ci left: 2.810424e-03	ci right 3.738651e-03	k: 195	n:60000
Cons ci ratio: 3.574844e-01	ci left: 1.643293e-03	ci right 2.372891e-03	k: 119	n:60000
KS ci ratio: 6.293441e-02	ci left: 5.881877e-02	ci right 6.265718e-02	k: 3643	n:60000
PTEN   60000 perm   15 sec   (4080 perm/sec)   p_kst 6.071667e-02   p_cons 1.983333e-03   p_joint 3.250000e-03

Joint ci ratio: 2.632693e-01	ci left: 2.741781e-03	ci right 3.585950e-03	k: 220	n:70000
Cons ci ratio: 3.383097e-01	ci left: 1.591065e-03	ci right 2.251319e-03	k: 133	n:70000
KS ci ratio: 5.810852e-02	ci left: 5.926631e-02	ci right 6.282732e-02	k: 4272	n:70000
PTEN   70000 perm   17 sec   (4018 perm/sec)   p_kst 6.102857e-02   p_cons 1.900000e-03   p_joint 3.142857e-03

Joint ci ratio: 2.500543e-01	ci left: 2.679759e-03	ci right 3.456972e-03	k: 244	n:80000
Cons ci ratio: 3.135431e-01	ci left: 1.644720e-03	ci right 2.267287e-03	k: 155	n:80000
KS ci ratio: 5.435812e-02	ci left: 5.937593e-02	ci right 6.270599e-02	k: 4882	n:80000
PTEN   80000 perm   20 sec   (3956 perm/sec)   p_kst 6.102500e-02   p_cons 1.937500e-03   p_joint 3.050000e-03

Joint ci ratio: 2.409039e-01	ci left: 2.580119e-03	ci right 3.296958e-03	k: 263	n:90000
Cons ci ratio: 2.986098e-01	ci left: 1.626103e-03	ci right 2.206754e-03	k: 171	n:90000
KS ci ratio: 5.125123e-02	ci left: 5.946697e-02	ci right 6.260584e-02	k: 5492	n:90000
PTEN   90000 perm   23 sec   (3888 perm/sec)   p_kst 6.102222e-02   p_cons 1.900000e-03   p_joint 2.922222e-03

Joint ci ratio: 2.818939e-01	ci left: 1.658220e-03	ci right 2.211309e-03	k: 192	n:100000
Cons ci ratio: 2.818939e-01	ci left: 1.658220e-03	ci right 2.211309e-03	k: 192	n:100000
KS ci ratio: 4.874181e-02	ci left: 5.926736e-02	ci right 6.223818e-02	k: 6074	n:100000
PTEN   100000 perm   26 sec   (3829 perm/sec)   p_kst 6.074000e-02   p_cons 1.920000e-03   p_joint 1.920000e-03

Joint ci ratio: 3.031070e-01	ci left: 1.288388e-03	ci right 1.756707e-03	k: 166	n:110000
Cons ci ratio: 2.696038e-01	ci left: 1.659801e-03	ci right 2.185199e-03	k: 210	n:110000
KS ci ratio: 4.640885e-02	ci left: 5.949380e-02	ci right 6.232940e-02	k: 6699	n:110000
PTEN   110000 perm   29 sec   (3772 perm/sec)   p_kst 6.090000e-02   p_cons 1.909091e-03   p_joint 1.509091e-03

Joint ci ratio: 2.935972e-01	ci left: 1.265828e-03	ci right 1.708826e-03	k: 177	n:120000
Cons ci ratio: 2.616704e-01	ci left: 1.622600e-03	ci right 2.118636e-03	k: 223	n:120000
KS ci ratio: 4.450151e-02	ci left: 5.938020e-02	ci right 6.209107e-02	k: 7287	n:120000
PTEN   120000 perm   32 sec   (3718 perm/sec)   p_kst 6.072500e-02   p_cons 1.858333e-03   p_joint 1.475000e-03

Joint ci ratio: 2.969743e-01	ci left: 1.139955e-03	ci right 1.544354e-03	k: 173	n:130000
Cons ci ratio: 2.533296e-01	ci left: 1.605722e-03	ci right 2.078481e-03	k: 238	n:130000
KS ci ratio: 4.275376e-02	ci left: 5.943843e-02	ci right 6.204275e-02	k: 7895	n:130000
PTEN   130000 perm   35 sec   (3664 perm/sec)   p_kst 6.073077e-02   p_cons 1.830769e-03   p_joint 1.330769e-03

Joint ci ratio: 3.264975e-01	ci left: 8.609466e-04	ci right 1.203119e-03	k: 143	n:140000
Cons ci ratio: 2.438227e-01	ci left: 1.618292e-03	ci right 2.074166e-03	k: 257	n:140000
KS ci ratio: 4.113008e-02	ci left: 5.967405e-02	ci right 6.218703e-02	k: 8529	n:140000
PTEN   140000 perm   39 sec   (3614 perm/sec)   p_kst 6.092143e-02   p_cons 1.835714e-03   p_joint 1.021429e-03

Joint ci ratio: 3.209783e-01	ci left: 8.341730e-04	ci right 1.158947e-03	k: 148	n:150000
Cons ci ratio: 2.307656e-01	ci left: 1.698531e-03	ci right 2.147738e-03	k: 287	n:150000
KS ci ratio: 3.972916e-02	ci left: 5.973456e-02	ci right 6.216244e-02	k: 9141	n:150000
PTEN   150000 perm   42 sec   (3560 perm/sec)   p_kst 6.094000e-02   p_cons 1.913333e-03   p_joint 9.866667e-04

Joint ci ratio: 2.340590e-01	ci left: 1.545270e-03	ci right 1.960619e-03	k: 279	n:160000
Cons ci ratio: 2.253570e-01	ci left: 1.674872e-03	ci right 2.105998e-03	k: 301	n:160000
KS ci ratio: 3.919274e-02	ci left: 5.768933e-02	ci right 6.000169e-02	k: 9414	n:160000
PTEN   160000 perm   46 sec   (3512 perm/sec)   p_kst 5.883750e-02   p_cons 1.881250e-03   p_joint 1.743750e-03

Joint ci ratio: 2.268797e-01	ci left: 1.554142e-03	ci right 1.957272e-03	k: 297	n:170000
Cons ci ratio: 2.199631e-01	ci left: 1.659664e-03	ci right 2.075266e-03	k: 316	n:170000
KS ci ratio: 3.803555e-02	ci left: 5.768630e-02	ci right 5.992877e-02	k: 9996	n:170000
PTEN   170000 perm   49 sec   (3462 perm/sec)   p_kst 5.880000e-02   p_cons 1.858824e-03   p_joint 1.747059e-03

Joint ci ratio: 2.182570e-01	ci left: 1.593707e-03	ci right 1.989282e-03	k: 321	n:180000
Cons ci ratio: 2.142932e-01	ci left: 1.656769e-03	ci right 2.059546e-03	k: 333	n:180000
KS ci ratio: 3.684950e-02	ci left: 5.805901e-02	ci right 6.024410e-02	k: 10646	n:180000
PTEN   180000 perm   53 sec   (3413 perm/sec)   p_kst 5.914444e-02   p_cons 1.850000e-03   p_joint 1.783333e-03

Joint ci ratio: 2.288316e-01	ci left: 1.365719e-03	ci right 1.723450e-03	k: 292	n:190000
Cons ci ratio: 2.093392e-01	ci left: 1.649314e-03	ci right 2.039821e-03	k: 349	n:190000
KS ci ratio: 3.586074e-02	ci left: 5.810641e-02	ci right 6.023338e-02	k: 11241	n:190000
PTEN   190000 perm   57 sec   (3363 perm/sec)   p_kst 5.916316e-02   p_cons 1.836842e-03   p_joint 1.536842e-03

Joint ci ratio: 2.288405e-01	ci left: 1.297428e-03	ci right 1.637285e-03	k: 292	n:200000
Cons ci ratio: 2.025083e-01	ci left: 1.680664e-03	ci right 2.064004e-03	k: 373	n:200000
KS ci ratio: 3.500098e-02	ci left: 5.798116e-02	ci right 6.005164e-02	k: 11802	n:200000
PTEN   200000 perm   60 sec   (3317 perm/sec)   p_kst 5.901000e-02   p_cons 1.865000e-03   p_joint 1.460000e-03

Joint ci ratio: 2.235621e-01	ci left: 1.298535e-03	ci right 1.629757e-03	k: 306	n:210000
Cons ci ratio: 1.985673e-01	ci left: 1.668474e-03	ci right 2.040730e-03	k: 388	n:210000
KS ci ratio: 3.412989e-02	ci left: 5.809514e-02	ci right 6.011705e-02	k: 12411	n:210000
PTEN   210000 perm   64 sec   (3276 perm/sec)   p_kst 5.910000e-02   p_cons 1.847619e-03   p_joint 1.457143e-03

Joint ci ratio: 2.261664e-01	ci left: 1.209478e-03	ci right 1.522078e-03	k: 299	n:220000
Cons ci ratio: 1.936508e-01	ci left: 1.679081e-03	ci right 2.043335e-03	k: 408	n:220000
KS ci ratio: 3.328545e-02	ci left: 5.831660e-02	ci right 6.029503e-02	k: 13046	n:220000
PTEN   220000 perm   68 sec   (3234 perm/sec)   p_kst 5.930000e-02   p_cons 1.854545e-03   p_joint 1.359091e-03

Joint ci ratio: 2.254220e-01	ci left: 1.165093e-03	ci right 1.465092e-03	k: 301	n:230000
Cons ci ratio: 1.895255e-01	ci left: 1.680585e-03	ci right 2.036505e-03	k: 426	n:230000
KS ci ratio: 3.257546e-02	ci left: 5.826479e-02	ci right 6.019851e-02	k: 13622	n:230000
PTEN   230000 perm   72 sec   (3194 perm/sec)   p_kst 5.922609e-02   p_cons 1.852174e-03   p_joint 1.308696e-03

Joint ci ratio: 2.196765e-01	ci left: 1.179499e-03	ci right 1.474422e-03	k: 317	n:240000
Cons ci ratio: 1.840034e-01	ci left: 1.713832e-03	ci right 2.065039e-03	k: 452	n:240000
KS ci ratio: 3.191382e-02	ci left: 5.820117e-02	ci right 6.009282e-02	k: 14194	n:240000
PTEN   240000 perm   76 sec   (3154 perm/sec)   p_kst 5.914167e-02   p_cons 1.883333e-03   p_joint 1.320833e-03

Joint ci ratio: 2.133916e-01	ci left: 1.204200e-03	ci right 1.495558e-03	k: 336	n:250000
Cons ci ratio: 1.802619e-01	ci left: 1.717814e-03	ci right 2.061898e-03	k: 471	n:250000
KS ci ratio: 3.125943e-02	ci left: 5.825419e-02	ci right 6.010804e-02	k: 14794	n:250000
PTEN   250000 perm   80 sec   (3115 perm/sec)   p_kst 5.917600e-02   p_cons 1.884000e-03   p_joint 1.344000e-03

Joint ci ratio: 2.093913e-01	ci left: 1.205238e-03	ci right 1.490679e-03	k: 349	n:260000
Cons ci ratio: 1.780156e-01	ci left: 1.695827e-03	ci right 2.030818e-03	k: 483	n:260000
KS ci ratio: 3.071909e-02	ci left: 5.803239e-02	ci right 5.984669e-02	k: 15323	n:260000
PTEN   260000 perm   84 sec   (3078 perm/sec)   p_kst 5.893462e-02   p_cons 1.857692e-03   p_joint 1.342308e-03

Joint ci ratio: 2.056079e-01	ci left: 1.206246e-03	ci right 1.486115e-03	k: 362	n:270000
Cons ci ratio: 1.742742e-01	ci left: 1.707369e-03	ci right 2.036805e-03	k: 504	n:270000
KS ci ratio: 3.015228e-02	ci left: 5.802218e-02	ci right 5.980212e-02	k: 15905	n:270000
PTEN   270000 perm   89 sec   (3042 perm/sec)   p_kst 5.890741e-02   p_cons 1.866667e-03   p_joint 1.340741e-03

Joint ci ratio: 2.025626e-01	ci left: 1.200444e-03	ci right 1.474331e-03	k: 373	n:280000
Cons ci ratio: 1.712492e-01	ci left: 1.707897e-03	ci right 2.031124e-03	k: 522	n:280000
KS ci ratio: 2.963197e-02	ci left: 5.795270e-02	ci right 5.969930e-02	k: 16470	n:280000
PTEN   280000 perm   93 sec   (3007 perm/sec)   p_kst 5.882143e-02   p_cons 1.864286e-03   p_joint 1.332143e-03

Joint ci ratio: 1.983631e-01	ci left: 1.211453e-03	ci right 1.481429e-03	k: 389	n:290000
Cons ci ratio: 1.682207e-01	ci left: 1.711739e-03	ci right 2.029383e-03	k: 541	n:290000
KS ci ratio: 2.912136e-02	ci left: 5.794991e-02	ci right 5.966582e-02	k: 17053	n:290000
PTEN   290000 perm   98 sec   (2972 perm/sec)   p_kst 5.880345e-02   p_cons 1.865517e-03   p_joint 1.341379e-03

Joint ci ratio: 1.999133e-01	ci left: 1.152065e-03	ci right 1.411057e-03	k: 383	n:300000
Cons ci ratio: 1.656435e-01	ci left: 1.708980e-03	ci right 2.020769e-03	k: 558	n:300000
KS ci ratio: 2.861214e-02	ci left: 5.804024e-02	ci right 5.972829e-02	k: 17664	n:300000
PTEN   300000 perm   102 sec   (2935 perm/sec)   p_kst 5.888000e-02   p_cons 1.860000e-03   p_joint 1.276667e-03

Joint ci ratio: 1.951418e-01	ci left: 1.173162e-03	ci right 1.429855e-03	k: 402	n:310000
Cons ci ratio: 1.634658e-01	ci left: 1.700245e-03	ci right 2.005962e-03	k: 573	n:310000
KS ci ratio: 2.814674e-02	ci left: 5.805450e-02	ci right 5.971505e-02	k: 18253	n:310000
PTEN   310000 perm   107 sec   (2900 perm/sec)   p_kst 5.888065e-02   p_cons 1.848387e-03   p_joint 1.296774e-03

Joint ci ratio: 1.968652e-01	ci left: 1.115696e-03	ci right 1.362229e-03	k: 395	n:320000
Cons ci ratio: 1.604196e-01	ci left: 1.713077e-03	ci right 2.014808e-03	k: 595	n:320000
KS ci ratio: 2.770567e-02	ci left: 5.805876e-02	ci right 5.969299e-02	k: 18839	n:320000
PTEN   320000 perm   112 sec   (2869 perm/sec)   p_kst 5.887187e-02   p_cons 1.859375e-03   p_joint 1.234375e-03

Joint ci ratio: 2.170011e-01	ci left: 8.807195e-04	ci right 1.097894e-03	k: 325	n:330000
Cons ci ratio: 1.579221e-01	ci left: 1.716449e-03	ci right 2.013620e-03	k: 614	n:330000
KS ci ratio: 2.726012e-02	ci left: 5.816231e-02	ci right 5.977272e-02	k: 19458	n:330000
PTEN   330000 perm   116 sec   (2840 perm/sec)   p_kst 5.896364e-02   p_cons 1.860606e-03   p_joint 9.848485e-04

Joint ci ratio: 2.147091e-01	ci left: 8.742909e-04	ci right 1.087303e-03	k: 332	n:340000
Cons ci ratio: 1.561558e-01	ci left: 1.705522e-03	ci right 1.997191e-03	k: 628	n:340000
KS ci ratio: 2.685031e-02	ci left: 5.819859e-02	ci right 5.978541e-02	k: 20056	n:340000
PTEN   340000 perm   121 sec   (2811 perm/sec)   p_kst 5.898824e-02   p_cons 1.847059e-03   p_joint 9.764706e-04

Joint ci ratio: 1.695053e-01	ci left: 1.396387e-03	ci right 1.657692e-03	k: 533	n:350000
Cons ci ratio: 1.537305e-01	ci left: 1.711721e-03	ci right 1.999484e-03	k: 648	n:350000
KS ci ratio: 2.647208e-02	ci left: 5.817618e-02	ci right 5.973970e-02	k: 20634	n:350000
PTEN   350000 perm   126 sec   (2784 perm/sec)   p_kst 5.895429e-02   p_cons 1.851429e-03   p_joint 1.522857e-03

Joint ci ratio: 1.665670e-01	ci left: 1.408157e-03	ci right 1.666639e-03	k: 552	n:360000
Cons ci ratio: 1.508511e-01	ci left: 1.730973e-03	ci right 2.016030e-03	k: 673	n:360000
KS ci ratio: 2.608522e-02	ci left: 5.825732e-02	ci right 5.979979e-02	k: 21249	n:360000
PTEN   360000 perm   131 sec   (2757 perm/sec)   p_kst 5.902500e-02   p_cons 1.869444e-03   p_joint 1.533333e-03

Joint ci ratio: 1.658214e-01	ci left: 1.383049e-03	ci right 1.635672e-03	k: 557	n:370000
Cons ci ratio: 1.494182e-01	ci left: 1.718004e-03	ci right 1.997998e-03	k: 686	n:370000
KS ci ratio: 2.572297e-02	ci left: 5.829930e-02	ci right 5.982113e-02	k: 21851	n:370000
PTEN   370000 perm   135 sec   (2731 perm/sec)   p_kst 5.905676e-02   p_cons 1.854054e-03   p_joint 1.505405e-03

Joint ci ratio: 1.645014e-01	ci left: 1.369357e-03	ci right 1.617291e-03	k: 566	n:380000
Cons ci ratio: 1.472894e-01	ci left: 1.723472e-03	ci right 2.000002e-03	k: 706	n:380000
KS ci ratio: 2.537540e-02	ci left: 5.833921e-02	ci right 5.984121e-02	k: 22453	n:380000
PTEN   380000 perm   140 sec   (2707 perm/sec)   p_kst 5.908684e-02   p_cons 1.857895e-03   p_joint 1.489474e-03

Joint ci ratio: 1.634970e-01	ci left: 1.351457e-03	ci right 1.594508e-03	k: 573	n:390000
Cons ci ratio: 1.460563e-01	ci left: 1.708919e-03	ci right 1.980619e-03	k: 718	n:390000
KS ci ratio: 2.502483e-02	ci left: 5.845113e-02	ci right 5.993492e-02	k: 23084	n:390000
PTEN   390000 perm   145 sec   (2681 perm/sec)   p_kst 5.918974e-02   p_cons 1.841026e-03   p_joint 1.469231e-03

Joint ci ratio: 1.647989e-01	ci left: 1.296092e-03	ci right 1.531226e-03	k: 564	n:400000
Cons ci ratio: 1.448537e-01	ci left: 1.695103e-03	ci right 1.962196e-03	k: 730	n:400000
KS ci ratio: 2.470057e-02	ci left: 5.850290e-02	ci right 5.996849e-02	k: 23693	n:400000
PTEN   400000 perm   151 sec   (2653 perm/sec)   p_kst 5.923250e-02   p_cons 1.825000e-03   p_joint 1.410000e-03

Joint ci ratio: 1.635029e-01	ci left: 1.285528e-03	ci right 1.516732e-03	k: 573	n:410000
Cons ci ratio: 1.426265e-01	ci left: 1.707840e-03	ci right 1.972450e-03	k: 753	n:410000
KS ci ratio: 2.440729e-02	ci left: 5.846739e-02	ci right 5.991446e-02	k: 24267	n:410000
PTEN   410000 perm   156 sec   (2624 perm/sec)   p_kst 5.918780e-02   p_cons 1.836585e-03   p_joint 1.397561e-03

Joint ci ratio: 1.618205e-01	ci left: 1.282329e-03	ci right 1.510353e-03	k: 585	n:420000
Cons ci ratio: 1.410455e-01	ci left: 1.706217e-03	ci right 1.967399e-03	k: 770	n:420000
KS ci ratio: 2.409844e-02	ci left: 5.855205e-02	ci right 5.998261e-02	k: 24891	n:420000
PTEN   420000 perm   162 sec   (2599 perm/sec)   p_kst 5.926429e-02   p_cons 1.833333e-03   p_joint 1.392857e-03

Joint ci ratio: 1.639377e-01	ci left: 1.219042e-03	ci right 1.438929e-03	k: 570	n:430000
Cons ci ratio: 1.396938e-01	ci left: 1.700196e-03	ci right 1.957754e-03	k: 785	n:430000
KS ci ratio: 2.380103e-02	ci left: 5.863287e-02	ci right 6.004749e-02	k: 25515	n:430000
PTEN   430000 perm   167 sec   (2573 perm/sec)   p_kst 5.933721e-02   p_cons 1.825581e-03   p_joint 1.325581e-03

Joint ci ratio: 1.506532e-01	ci left: 1.420607e-03	ci right 1.654218e-03	k: 675	n:440000
Cons ci ratio: 1.378638e-01	ci left: 1.707626e-03	ci right 1.962642e-03	k: 806	n:440000
KS ci ratio: 2.351771e-02	ci left: 5.869430e-02	ci right 6.009332e-02	k: 26132	n:440000
PTEN   440000 perm   173 sec   (2546 perm/sec)   p_kst 5.939091e-02   p_cons 1.831818e-03   p_joint 1.534091e-03

Joint ci ratio: 1.515566e-01	ci left: 1.371930e-03	ci right 1.599011e-03	k: 667	n:450000
Cons ci ratio: 1.361039e-01	ci left: 1.714746e-03	ci right 1.967293e-03	k: 827	n:450000
KS ci ratio: 2.323319e-02	ci left: 5.880614e-02	ci right 6.019065e-02	k: 26773	n:450000
PTEN   450000 perm   179 sec   (2521 perm/sec)   p_kst 5.949556e-02   p_cons 1.837778e-03   p_joint 1.482222e-03

Joint ci ratio: 1.493366e-01	ci left: 1.383947e-03	ci right 1.609363e-03	k: 687	n:460000
Cons ci ratio: 1.346482e-01	ci left: 1.715274e-03	ci right 1.964980e-03	k: 845	n:460000
KS ci ratio: 2.298060e-02	ci left: 5.880727e-02	ci right 6.017655e-02	k: 27365	n:460000
PTEN   460000 perm   184 sec   (2496 perm/sec)   p_kst 5.948913e-02   p_cons 1.836957e-03   p_joint 1.493478e-03

Joint ci ratio: 1.501057e-01	ci left: 1.340164e-03	ci right 1.559673e-03	k: 680	n:470000
Cons ci ratio: 1.333931e-01	ci left: 1.711680e-03	ci right 1.958356e-03	k: 861	n:470000
KS ci ratio: 2.274516e-02	ci left: 5.876398e-02	ci right 6.011805e-02	k: 27936	n:470000
PTEN   470000 perm   190 sec   (2474 perm/sec)   p_kst 5.943830e-02   p_cons 1.831915e-03   p_joint 1.446809e-03

Joint ci ratio: 1.493413e-01	ci left: 1.326280e-03	ci right 1.542310e-03	k: 687	n:480000
Cons ci ratio: 1.319468e-01	ci left: 1.714290e-03	ci right 1.958453e-03	k: 880	n:480000
KS ci ratio: 2.250296e-02	ci left: 5.879096e-02	ci right 6.013103e-02	k: 28540	n:480000
PTEN   480000 perm   196 sec   (2453 perm/sec)   p_kst 5.945833e-02   p_cons 1.833333e-03   p_joint 1.431250e-03

Joint ci ratio: 1.498899e-01	ci left: 1.289389e-03	ci right 1.500251e-03	k: 682	n:490000
Cons ci ratio: 1.306920e-01	ci left: 1.712858e-03	ci right 1.954317e-03	k: 897	n:490000
KS ci ratio: 2.226427e-02	ci left: 5.883720e-02	ci right 6.016393e-02	k: 29154	n:490000
PTEN   490000 perm   202 sec   (2431 perm/sec)   p_kst 5.949796e-02   p_cons 1.830612e-03   p_joint 1.391837e-03

Joint ci ratio: 1.503335e-01	ci left: 1.255900e-03	ci right 1.461947e-03	k: 678	n:500000
Cons ci ratio: 1.293309e-01	ci left: 1.715365e-03	ci right 1.954466e-03	k: 916	n:500000
KS ci ratio: 2.203382e-02	ci left: 5.887769e-02	ci right 6.019141e-02	k: 29766	n:500000
PTEN   500000 perm   208 sec   (2407 perm/sec)   p_kst 5.953200e-02   p_cons 1.832000e-03   p_joint 1.356000e-03

Joint ci ratio: 1.522561e-01	ci left: 1.199201e-03	ci right 1.398691e-03	k: 661	n:510000
Cons ci ratio: 1.280115e-01	ci left: 1.717787e-03	ci right 1.954597e-03	k: 935	n:510000
KS ci ratio: 2.179930e-02	ci left: 5.897324e-02	ci right 6.027491e-02	k: 30407	n:510000
PTEN   510000 perm   214 sec   (2379 perm/sec)   p_kst 5.962157e-02   p_cons 1.833333e-03   p_joint 1.296078e-03

Joint ci ratio: 1.507828e-01	ci left: 1.200191e-03	ci right 1.397740e-03	k: 674	n:520000
Cons ci ratio: 1.262688e-01	ci left: 1.733163e-03	ci right 1.968597e-03	k: 961	n:520000
KS ci ratio: 2.157878e-02	ci left: 5.903073e-02	ci right 6.032033e-02	k: 31030	n:520000
PTEN   520000 perm   221 sec   (2358 perm/sec)   p_kst 5.967308e-02   p_cons 1.848077e-03   p_joint 1.296154e-03

Joint ci ratio: 1.494602e-01	ci left: 1.199337e-03	ci right 1.394859e-03	k: 686	n:530000
Cons ci ratio: 1.249762e-01	ci left: 1.737012e-03	ci right 1.970374e-03	k: 981	n:530000
KS ci ratio: 2.138601e-02	ci left: 5.897536e-02	ci right 6.025210e-02	k: 31594	n:530000
PTEN   530000 perm   227 sec   (2337 perm/sec)   p_kst 5.961132e-02   p_cons 1.850943e-03   p_joint 1.294340e-03

Joint ci ratio: 1.491363e-01	ci left: 1.182474e-03	ci right 1.374792e-03	k: 689	n:540000
Cons ci ratio: 1.241577e-01	ci left: 1.728168e-03	ci right 1.958710e-03	k: 994	n:540000
KS ci ratio: 2.117942e-02	ci left: 5.902159e-02	ci right 6.028684e-02	k: 32212	n:540000
PTEN   540000 perm   233 sec   (2316 perm/sec)   p_kst 5.965185e-02   p_cons 1.840741e-03   p_joint 1.275926e-03

Joint ci ratio: 1.472276e-01	ci left: 1.192489e-03	ci right 1.383735e-03	k: 707	n:550000
Cons ci ratio: 1.227466e-01	ci left: 1.737275e-03	ci right 1.966206e-03	k: 1017	n:550000
KS ci ratio: 2.097870e-02	ci left: 5.906620e-02	ci right 6.032026e-02	k: 32830	n:550000
PTEN   550000 perm   239 sec   (2298 perm/sec)   p_kst 5.969091e-02   p_cons 1.849091e-03   p_joint 1.285455e-03

Joint ci ratio: 1.474380e-01	ci left: 1.167754e-03	ci right 1.355324e-03	k: 705	n:560000
Cons ci ratio: 1.213826e-01	ci left: 1.746070e-03	ci right 1.973419e-03	k: 1040	n:560000
KS ci ratio: 2.079218e-02	ci left: 5.906307e-02	ci right 6.030578e-02	k: 33422	n:560000
PTEN   560000 perm   246 sec   (2279 perm/sec)   p_kst 5.968214e-02   p_cons 1.857143e-03   p_joint 1.258929e-03

Joint ci ratio: 1.469196e-01	ci left: 1.155715e-03	ci right 1.340642e-03	k: 710	n:570000
Cons ci ratio: 1.209199e-01	ci left: 1.729046e-03	ci right 1.953259e-03	k: 1048	n:570000
KS ci ratio: 2.060732e-02	ci left: 5.907755e-02	ci right 6.030938e-02	k: 34024	n:570000
PTEN   570000 perm   252 sec   (2259 perm/sec)   p_kst 5.969123e-02   p_cons 1.838596e-03   p_joint 1.245614e-03

Joint ci ratio: 1.338838e-01	ci left: 1.377036e-03	ci right 1.576273e-03	k: 855	n:580000
Cons ci ratio: 1.197272e-01	ci left: 1.734352e-03	ci right 1.956878e-03	k: 1069	n:580000
KS ci ratio: 2.044427e-02	ci left: 5.899893e-02	ci right 6.021927e-02	k: 34572	n:580000
PTEN   580000 perm   259 sec   (2240 perm/sec)   p_kst 5.960690e-02   p_cons 1.843103e-03   p_joint 1.474138e-03

Joint ci ratio: 1.352371e-01	ci left: 1.325851e-03	ci right 1.519776e-03	k: 838	n:590000
Cons ci ratio: 1.186781e-01	ci left: 1.736199e-03	ci right 1.956874e-03	k: 1088	n:590000
KS ci ratio: 2.026876e-02	ci left: 5.901241e-02	ci right 6.022243e-02	k: 35173	n:590000
PTEN   590000 perm   265 sec   (2222 perm/sec)   p_kst 5.961525e-02   p_cons 1.844068e-03   p_joint 1.420339e-03

Joint ci ratio: 1.392871e-01	ci left: 1.226495e-03	ci right 1.411707e-03	k: 790	n:600000
Cons ci ratio: 1.175499e-01	ci left: 1.741229e-03	ci right 1.960292e-03	k: 1109	n:600000
KS ci ratio: 2.009442e-02	ci left: 5.904373e-02	ci right 6.024386e-02	k: 35785	n:600000
PTEN   600000 perm   272 sec   (2204 perm/sec)   p_kst 5.964167e-02   p_cons 1.848333e-03   p_joint 1.316667e-03

Joint ci ratio: 1.107162e-01	ci left: 1.937249e-03	ci right 2.165882e-03	k: 1250	n:610000
Cons ci ratio: 1.165048e-01	ci left: 1.744512e-03	ci right 1.961903e-03	k: 1129	n:610000
KS ci ratio: 1.993586e-02	ci left: 5.901043e-02	ci right 6.020031e-02	k: 36358	n:610000
PTEN   610000 perm   279 sec   (2185 perm/sec)   p_kst 5.960328e-02   p_cons 1.850820e-03   p_joint 2.049180e-03

Joint ci ratio: 1.243604e-01	ci left: 1.500480e-03	ci right 1.700998e-03	k: 991	n:620000
Cons ci ratio: 1.156384e-01	ci left: 1.742997e-03	ci right 1.958474e-03	k: 1146	n:620000
KS ci ratio: 1.977644e-02	ci left: 5.900393e-02	ci right 6.018406e-02	k: 36947	n:620000
PTEN   620000 perm   286 sec   (2167 perm/sec)   p_kst 5.959194e-02   p_cons 1.848387e-03   p_joint 1.598387e-03

Joint ci ratio: 1.236154e-01	ci left: 1.495119e-03	ci right 1.693636e-03	k: 1003	n:630000
Cons ci ratio: 1.149891e-01	ci left: 1.735370e-03	ci right 1.948618e-03	k: 1159	n:630000
KS ci ratio: 1.962106e-02	ci left: 5.899609e-02	ci right 6.016669e-02	k: 37535	n:630000
PTEN   630000 perm   293 sec   (2149 perm/sec)   p_kst 5.957937e-02   p_cons 1.839683e-03   p_joint 1.592063e-03

Joint ci ratio: 1.227023e-01	ci left: 1.494473e-03	ci right 1.691332e-03	k: 1018	n:640000
Cons ci ratio: 1.143018e-01	ci left: 1.729502e-03	ci right 1.940673e-03	k: 1173	n:640000
KS ci ratio: 1.945952e-02	ci left: 5.904453e-02	ci right 6.020633e-02	k: 38159	n:640000
PTEN   640000 perm   300 sec   (2131 perm/sec)   p_kst 5.962344e-02   p_cons 1.832813e-03   p_joint 1.590625e-03

Joint ci ratio: 1.241147e-01	ci left: 1.437186e-03	ci right 1.628839e-03	k: 995	n:650000
Cons ci ratio: 1.133879e-01	ci left: 1.731293e-03	ci right 1.940879e-03	k: 1192	n:650000
KS ci ratio: 1.931621e-02	ci left: 5.900881e-02	ci right 6.016127e-02	k: 38729	n:650000
PTEN   650000 perm   308 sec   (2113 perm/sec)   p_kst 5.958308e-02   p_cons 1.833846e-03   p_joint 1.530769e-03

Joint ci ratio: 1.256413e-01	ci left: 1.380181e-03	ci right 1.566663e-03	k: 971	n:660000
Cons ci ratio: 1.125421e-01	ci left: 1.731564e-03	ci right 1.939515e-03	k: 1210	n:660000
KS ci ratio: 1.916409e-02	ci left: 5.904359e-02	ci right 6.018755e-02	k: 39345	n:660000
PTEN   660000 perm   315 sec   (2096 perm/sec)   p_kst 5.961364e-02   p_cons 1.833333e-03   p_joint 1.471212e-03

Joint ci ratio: 1.247462e-01	ci left: 1.379822e-03	ci right 1.564830e-03	k: 985	n:670000
Cons ci ratio: 1.118061e-01	ci left: 1.728930e-03	ci right 1.935117e-03	k: 1226	n:670000
KS ci ratio: 1.902489e-02	ci left: 5.902239e-02	ci right 6.015754e-02	k: 39924	n:670000
PTEN   670000 perm   322 sec   (2079 perm/sec)   p_kst 5.958806e-02   p_cons 1.829851e-03   p_joint 1.470149e-03

Joint ci ratio: 1.252575e-01	ci left: 1.348132e-03	ci right 1.529687e-03	k: 977	n:680000
Cons ci ratio: 1.107279e-01	ci left: 1.737817e-03	ci right 1.942935e-03	k: 1250	n:680000
KS ci ratio: 1.887430e-02	ci left: 5.908676e-02	ci right 6.021405e-02	k: 40561	n:680000
PTEN   680000 perm   330 sec   (2063 perm/sec)   p_kst 5.964853e-02   p_cons 1.838235e-03   p_joint 1.436765e-03

Joint ci ratio: 1.254517e-01	ci left: 1.324382e-03	ci right 1.503035e-03	k: 974	n:690000
Cons ci ratio: 1.098099e-01	ci left: 1.742226e-03	ci right 1.946050e-03	k: 1271	n:690000
KS ci ratio: 1.872893e-02	ci left: 5.913920e-02	ci right 6.025871e-02	k: 41191	n:690000
PTEN   690000 perm   337 sec   (2046 perm/sec)   p_kst 5.969710e-02   p_cons 1.842029e-03   p_joint 1.411594e-03

Joint ci ratio: 1.130635e-01	ci left: 1.617341e-03	ci right 1.812534e-03	k: 1199	n:700000
Cons ci ratio: 1.089143e-01	ci left: 1.746517e-03	ci right 1.949070e-03	k: 1292	n:700000
KS ci ratio: 1.859396e-02	ci left: 5.914750e-02	ci right 6.025901e-02	k: 41791	n:700000
PTEN   700000 perm   345 sec   (2030 perm/sec)   p_kst 5.970143e-02   p_cons 1.845714e-03   p_joint 1.712857e-03

Joint ci ratio: 1.155511e-01	ci left: 1.524780e-03	ci right 1.713127e-03	k: 1148	n:710000
Cons ci ratio: 1.079580e-01	ci left: 1.753434e-03	ci right 1.954890e-03	k: 1315	n:710000
KS ci ratio: 1.846510e-02	ci left: 5.913596e-02	ci right 6.023947e-02	k: 42377	n:710000
PTEN   710000 perm   353 sec   (2014 perm/sec)   p_kst 5.968592e-02   p_cons 1.852113e-03   p_joint 1.616901e-03

Joint ci ratio: 1.148042e-01	ci left: 1.523835e-03	ci right 1.710767e-03	k: 1163	n:720000
Cons ci ratio: 1.070665e-01	ci left: 1.758815e-03	ci right 1.959115e-03	k: 1337	n:720000
KS ci ratio: 1.834548e-02	ci left: 5.908466e-02	ci right 6.018000e-02	k: 42934	n:720000
PTEN   720000 perm   360 sec   (1998 perm/sec)   p_kst 5.963056e-02   p_cons 1.856944e-03   p_joint 1.615278e-03

Joint ci ratio: 1.141687e-01	ci left: 1.520259e-03	ci right 1.705650e-03	k: 1176	n:730000
Cons ci ratio: 1.064323e-01	ci left: 1.756054e-03	ci right 1.954781e-03	k: 1353	n:730000
KS ci ratio: 1.820901e-02	ci left: 5.915210e-02	ci right 6.024044e-02	k: 43577	n:730000
PTEN   730000 perm   368 sec   (1984 perm/sec)   p_kst 5.969452e-02   p_cons 1.853425e-03   p_joint 1.610959e-03

Joint ci ratio: 1.135436e-01	ci left: 1.516782e-03	ci right 1.700668e-03	k: 1189	n:740000
Cons ci ratio: 1.058866e-01	ci left: 1.750740e-03	ci right 1.947787e-03	k: 1367	n:740000
KS ci ratio: 1.808947e-02	ci left: 5.913162e-02	ci right 6.021237e-02	k: 44156	n:740000
PTEN   740000 perm   376 sec   (1968 perm/sec)   p_kst 5.967027e-02   p_cons 1.847297e-03   p_joint 1.606757e-03

Joint ci ratio: 1.128348e-01	ci left: 1.515992e-03	ci right 1.698559e-03	k: 1204	n:750000
Cons ci ratio: 1.050450e-01	ci left: 1.755957e-03	ci right 1.951923e-03	k: 1389	n:750000
KS ci ratio: 1.797140e-02	ci left: 5.911702e-02	ci right 6.019038e-02	k: 44739	n:750000
PTEN   750000 perm   384 sec   (1954 perm/sec)   p_kst 5.965200e-02   p_cons 1.852000e-03   p_joint 1.605333e-03

Joint ci ratio: 1.139303e-01	ci left: 1.466638e-03	ci right 1.645091e-03	k: 1181	n:760000
Cons ci ratio: 1.043715e-01	ci left: 1.755916e-03	ci right 1.950544e-03	k: 1407	n:760000
KS ci ratio: 1.783845e-02	ci left: 5.921028e-02	ci right 6.027729e-02	k: 45404	n:760000
PTEN   760000 perm   392 sec   (1940 perm/sec)   p_kst 5.974211e-02   p_cons 1.851316e-03   p_joint 1.553947e-03

Joint ci ratio: 9.953213e-02	ci left: 1.910304e-03	ci right 2.111654e-03	k: 1547	n:770000
Cons ci ratio: 1.037836e-01	ci left: 1.753350e-03	ci right 1.946532e-03	k: 1423	n:770000
KS ci ratio: 1.772684e-02	ci left: 5.918474e-02	ci right 6.024455e-02	k: 45979	n:770000
PTEN   770000 perm   400 sec   (1924 perm/sec)   p_kst 5.971299e-02   p_cons 1.848052e-03   p_joint 2.009091e-03

Joint ci ratio: 9.876918e-02	ci left: 1.915819e-03	ci right 2.116113e-03	k: 1571	n:780000
Cons ci ratio: 1.029552e-01	ci left: 1.759597e-03	ci right 1.951825e-03	k: 1446	n:780000
KS ci ratio: 1.761447e-02	ci left: 5.917775e-02	ci right 6.023065e-02	k: 46568	n:780000
PTEN   780000 perm   408 sec   (1910 perm/sec)   p_kst 5.970256e-02   p_cons 1.853846e-03   p_joint 2.014103e-03

Joint ci ratio: 9.839485e-02	ci left: 1.906384e-03	ci right 2.104891e-03	k: 1583	n:790000
Cons ci ratio: 1.021463e-01	ci left: 1.765691e-03	ci right 1.956979e-03	k: 1469	n:790000
KS ci ratio: 1.750699e-02	ci left: 5.915331e-02	ci right 6.019929e-02	k: 47143	n:790000
PTEN   790000 perm   417 sec   (1895 perm/sec)   p_kst 5.967468e-02   p_cons 1.859494e-03   p_joint 2.003797e-03

Joint ci ratio: 9.793256e-02	ci left: 1.900843e-03	ci right 2.097791e-03	k: 1598	n:800000
Cons ci ratio: 1.016636e-01	ci left: 1.760673e-03	ci right 1.950463e-03	k: 1483	n:800000
KS ci ratio: 1.739021e-02	ci left: 5.920170e-02	ci right 6.024149e-02	k: 47776	n:800000
PTEN   800000 perm   425 sec   (1881 perm/sec)   p_kst 5.972000e-02   p_cons 1.853750e-03   p_joint 1.997500e-03

Joint ci ratio: 9.720554e-02	ci left: 1.906283e-03	ci right 2.102244e-03	k: 1622	n:810000
Cons ci ratio: 1.012555e-01	ci left: 1.753375e-03	ci right 1.941574e-03	k: 1495	n:810000
KS ci ratio: 1.728561e-02	ci left: 5.918499e-02	ci right 6.021817e-02	k: 48357	n:810000
PTEN   810000 perm   434 sec   (1867 perm/sec)   p_kst 5.970000e-02   p_cons 1.845679e-03   p_joint 2.002469e-03

Joint ci ratio: 9.655323e-02	ci left: 1.909215e-03	ci right 2.104086e-03	k: 1644	n:820000
Cons ci ratio: 1.006185e-01	ci left: 1.754578e-03	ci right 1.941652e-03	k: 1514	n:820000
KS ci ratio: 1.717914e-02	ci left: 5.919299e-02	ci right 6.021988e-02	k: 48958	n:820000
PTEN   820000 perm   443 sec   (1852 perm/sec)   p_kst 5.970488e-02   p_cons 1.846341e-03   p_joint 2.004878e-03

Joint ci ratio: 9.815160e-02	ci left: 1.823907e-03	ci right 2.013331e-03	k: 1591	n:830000
Cons ci ratio: 1.001243e-01	ci left: 1.751057e-03	ci right 1.936784e-03	k: 1529	n:830000
KS ci ratio: 1.707535e-02	ci left: 5.919602e-02	ci right 6.021670e-02	k: 49555	n:830000
PTEN   830000 perm   451 sec   (1839 perm/sec)   p_kst 5.970482e-02   p_cons 1.842169e-03   p_joint 1.916867e-03

Joint ci ratio: 9.793723e-02	ci left: 1.810323e-03	ci right 1.997901e-03	k: 1598	n:840000
Cons ci ratio: 9.973432e-02	ci left: 1.744140e-03	ci right 1.928370e-03	k: 1541	n:840000
KS ci ratio: 1.697720e-02	ci left: 5.917409e-02	ci right 6.018847e-02	k: 50131	n:840000
PTEN   840000 perm   460 sec   (1827 perm/sec)   p_kst 5.967976e-02   p_cons 1.834524e-03   p_joint 1.902381e-03

Outputting figure to mutsig2_images.part000000000140/PTEN.10_1248_840000_0.05968_0.0018345_0.0019024.png
                gene_name: PTEN
               theta_stop: 0.100 
                    nperm: 840000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.0018 
      ci_cons_bounds_left: 0.0017 
     ci_cons_bounds_right: 0.0019 
                  p_joint: 0.0019 
     ci_joint_bounds_left: 0.0018 
    ci_joint_bounds_right: 0.0020 

Current progress: 6 percent done.
PSME4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.258765e-01	ci left: 8.280946e-02	ci right 9.403165e-02	k: 883	n:10000
Cons ci ratio: 1.119938e-02	ci left: 9.192503e-01	ci right 9.297008e-01	k: 9246	n:10000
KS ci ratio: 2.008231e-01	ci left: 3.300513e-02	ci right 4.046787e-02	k: 366	n:10000
PSME4   10000 perm   2 sec   (4418 perm/sec)   p_kst 3.660000e-02   p_cons 9.246000e-01   p_joint 8.830000e-02

Joint ci ratio: 8.179755e-02	ci left: 9.877126e-02	ci right 1.072446e-01	k: 2059	n:20000
Cons ci ratio: 8.327180e-03	ci left: 9.133458e-01	ci right 9.210324e-01	k: 18345	n:20000
KS ci ratio: 1.413087e-01	ci left: 3.442644e-02	ci right 3.970925e-02	k: 740	n:20000
PSME4   20000 perm   5 sec   (4038 perm/sec)   p_kst 3.700000e-02   p_cons 9.172500e-01   p_joint 1.029500e-01

Joint ci ratio: 7.296385e-02	ci left: 8.455536e-02	ci right 9.099139e-02	k: 2632	n:30000
Cons ci ratio: 6.560802e-03	ci left: 9.194166e-01	ci right 9.255013e-01	k: 27675	n:30000
KS ci ratio: 1.190713e-01	ci left: 3.278697e-02	ci right 3.697040e-02	k: 1045	n:30000
PSME4   30000 perm   8 sec   (3878 perm/sec)   p_kst 3.483333e-02   p_cons 9.225000e-01   p_joint 8.773333e-02

Joint ci ratio: 7.024720e-02	ci left: 6.968224e-02	ci right 7.478007e-02	k: 2888	n:40000
Cons ci ratio: 5.412994e-03	ci left: 9.265918e-01	ci right 9.316457e-01	k: 37166	n:40000
KS ci ratio: 1.020500e-01	ci left: 3.375670e-02	ci right 3.741113e-02	k: 1422	n:40000
PSME4   40000 perm   11 sec   (3775 perm/sec)   p_kst 3.555000e-02   p_cons 9.291500e-01   p_joint 7.220000e-02

Joint ci ratio: 6.177056e-02	ci left: 7.223287e-02	ci right 7.685667e-02	k: 3726	n:50000
Cons ci ratio: 4.834419e-03	ci left: 9.270588e-01	ci right 9.315712e-01	k: 46467	n:50000
KS ci ratio: 9.151010e-02	ci left: 3.377775e-02	ci right 3.703648e-02	k: 1769	n:50000
PSME4   50000 perm   14 sec   (3696 perm/sec)   p_kst 3.538000e-02   p_cons 9.293400e-01   p_joint 7.452000e-02

Outputting figure to mutsig2_images.part000000000140/PSME4.9_5716_50000_0.03538_0.92934_0.07452.png
                gene_name: PSME4
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.034 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.077 

Current progress: 8 percent done.
PTCH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.621682e-02	ci left: 8.468243e-01	ci right 8.607689e-01	k: 8539	n:10000
Cons ci ratio: 3.033536e-02	ci left: 6.158280e-01	ci right 6.348989e-01	k: 6254	n:10000
KS ci ratio: 2.494214e-02	ci left: 7.028121e-01	ci right 7.206644e-01	k: 7118	n:10000
PTCH1   10000 perm   2 sec   (4591 perm/sec)   p_kst 7.118000e-01   p_cons 6.254000e-01   p_joint 8.539000e-01

Outputting figure to mutsig2_images.part000000000140/PTCH1.9_4645_10000_0.7118_0.6254_0.8539.png
                gene_name: PTCH1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 10 percent done.
PTK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.718613e-02	ci left: 6.659215e-01	ci right 6.843764e-01	k: 6752	n:10000
Cons ci ratio: 4.517969e-02	ci left: 4.196701e-01	ci right 4.391710e-01	k: 4294	n:10000
KS ci ratio: 3.053635e-02	ci left: 6.127133e-01	ci right 6.318154e-01	k: 6223	n:10000
PTK7   10000 perm   2 sec   (5120 perm/sec)   p_kst 6.223000e-01   p_cons 4.294000e-01   p_joint 6.752000e-01

Outputting figure to mutsig2_images.part000000000140/PTK7.9_3293_10000_0.6223_0.4294_0.6752.png
                gene_name: PTK7
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 12 percent done.
PTDSS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.442180e-02	ci left: 3.322029e-01	ci right 3.508895e-01	k: 3415	n:10000
Cons ci ratio: 8.732659e-02	ci left: 1.603269e-01	ci right 1.750672e-01	k: 1676	n:10000
KS ci ratio: 1.969253e-02	ci left: 7.905018e-01	ci right 8.063240e-01	k: 7985	n:10000
PTDSS1   10000 perm   2 sec   (5831 perm/sec)   p_kst 7.985000e-01   p_cons 1.676000e-01   p_joint 3.415000e-01

Outputting figure to mutsig2_images.part000000000140/PTDSS1.7_1474_10000_0.7985_0.1676_0.3415.png
                gene_name: PTDSS1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 14 percent done.
PTGER3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.011454e-02	ci left: 3.699753e-01	ci right 3.890950e-01	k: 3795	n:10000
Cons ci ratio: 8.673692e-02	ci left: 1.621934e-01	ci right 1.769996e-01	k: 1695	n:10000
KS ci ratio: 4.887162e-02	ci left: 3.818169e-01	ci right 4.010464e-01	k: 3914	n:10000
PTGER3   10000 perm   2 sec   (5552 perm/sec)   p_kst 3.914000e-01   p_cons 1.695000e-01   p_joint 3.795000e-01

Outputting figure to mutsig2_images.part000000000140/PTGER3.7_1492_10000_0.3914_0.1695_0.3795.png
                gene_name: PTGER3
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 16 percent done.
PTGFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.399478e-02	ci left: 8.806319e-01	ci right 8.931418e-01	k: 8870	n:10000
Cons ci ratio: 9.742198e-03	ci left: 9.371348e-01	ci right 9.464058e-01	k: 9419	n:10000
KS ci ratio: 2.693860e-02	ci left: 6.699500e-01	ci right 6.883455e-01	k: 6792	n:10000
PTGFR   10000 perm   2 sec   (5968 perm/sec)   p_kst 6.792000e-01   p_cons 9.419000e-01   p_joint 8.870000e-01

Outputting figure to mutsig2_images.part000000000140/PTGFR.7_1163_10000_0.6792_0.9419_0.887.png
                gene_name: PTGFR
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 18 percent done.
PTH2R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.017026e-02	ci left: 4.778579e-01	ci right 4.975492e-01	k: 4877	n:10000
Cons ci ratio: 5.287355e-02	ci left: 3.452172e-01	ci right 3.640676e-01	k: 3546	n:10000
KS ci ratio: 4.980742e-02	ci left: 3.728605e-01	ci right 3.920080e-01	k: 3824	n:10000
PTH2R   10000 perm   2 sec   (5693 perm/sec)   p_kst 3.824000e-01   p_cons 3.546000e-01   p_joint 4.877000e-01

Outputting figure to mutsig2_images.part000000000140/PTH2R.7_1705_10000_0.3824_0.3546_0.4877.png
                gene_name: PTH2R
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 20 percent done.
PTPN14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.382843e-02	ci left: 5.633354e-01	ci right 5.828220e-01	k: 5731	n:10000
Cons ci ratio: 3.151217e-02	ci left: 5.977488e-01	ci right 6.169886e-01	k: 6074	n:10000
KS ci ratio: 4.347894e-02	ci left: 4.385190e-01	ci right 4.581112e-01	k: 4483	n:10000
PTPN14   10000 perm   2 sec   (4820 perm/sec)   p_kst 4.483000e-01   p_cons 6.074000e-01   p_joint 5.731000e-01

Outputting figure to mutsig2_images.part000000000140/PTPN14.7_3636_10000_0.4483_0.6074_0.5731.png
                gene_name: PTPN14
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 22 percent done.
PTPN21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.530440e-02	ci left: 3.250533e-01	ci right 3.436433e-01	k: 3343	n:10000
Cons ci ratio: 1.010478e-01	ci left: 1.241518e-01	ci right 1.374641e-01	k: 1307	n:10000
KS ci ratio: 2.463854e-02	ci left: 7.078571e-01	ci right 7.256165e-01	k: 7168	n:10000
PTPN21   10000 perm   2 sec   (4708 perm/sec)   p_kst 7.168000e-01   p_cons 1.307000e-01   p_joint 3.343000e-01

Joint ci ratio: 3.421872e-02	ci left: 3.893621e-01	ci right 4.029681e-01	k: 7923	n:20000
Cons ci ratio: 7.060141e-02	ci left: 1.288149e-01	ci right 1.382920e-01	k: 2670	n:20000
KS ci ratio: 1.763932e-02	ci left: 7.054171e-01	ci right 7.180213e-01	k: 14235	n:20000
PTPN21   20000 perm   5 sec   (4229 perm/sec)   p_kst 7.117500e-01   p_cons 1.335000e-01   p_joint 3.961500e-01

Outputting figure to mutsig2_images.part000000000140/PTPN21.7_3597_20000_0.71175_0.1335_0.39615.png
                gene_name: PTPN21
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 24 percent done.
PTCH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.012518e-02	ci left: 3.698758e-01	ci right 3.889945e-01	k: 3794	n:10000
Cons ci ratio: 9.667188e-02	ci left: 1.343321e-01	ci right 1.480776e-01	k: 1411	n:10000
KS ci ratio: 1.449914e-02	ci left: 8.731632e-01	ci right 8.860148e-01	k: 8797	n:10000
PTCH2   10000 perm   2 sec   (5223 perm/sec)   p_kst 8.797000e-01   p_cons 1.411000e-01   p_joint 3.794000e-01

Outputting figure to mutsig2_images.part000000000140/PTCH2.6_3720_10000_0.8797_0.1411_0.3794.png
                gene_name: PTCH2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 27 percent done.
PTCHD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.572823e-02	ci left: 6.898019e-01	ci right 7.078821e-01	k: 6989	n:10000
Cons ci ratio: 3.536014e-02	ci left: 5.414881e-01	ci right 5.610820e-01	k: 5513	n:10000
KS ci ratio: 5.716943e-02	ci left: 3.105631e-01	ci right 3.289420e-01	k: 3197	n:10000
PTCHD3   10000 perm   2 sec   (5795 perm/sec)   p_kst 3.197000e-01   p_cons 5.513000e-01   p_joint 6.989000e-01

Outputting figure to mutsig2_images.part000000000140/PTCHD3.6_2320_10000_0.3197_0.5513_0.6989.png
                gene_name: PTCHD3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 29 percent done.
PTGS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.072499e-02	ci left: 6.098000e-01	ci right 6.289304e-01	k: 6194	n:10000
Cons ci ratio: 3.723660e-02	ci left: 5.157568e-01	ci right 5.354283e-01	k: 5256	n:10000
KS ci ratio: 3.758897e-02	ci left: 5.110539e-01	ci right 5.307340e-01	k: 5209	n:10000
PTGS1   10000 perm   2 sec   (5406 perm/sec)   p_kst 5.209000e-01   p_cons 5.256000e-01   p_joint 6.194000e-01

Outputting figure to mutsig2_images.part000000000140/PTGS1.6_1844_10000_0.5209_0.5256_0.6194.png
                gene_name: PTGS1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 31 percent done.
PTPDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.670348e-02	ci left: 2.480616e-01	ci right 2.652804e-01	k: 2566	n:10000
Cons ci ratio: 6.983219e-02	ci left: 2.311621e-01	ci right 2.479899e-01	k: 2395	n:10000
KS ci ratio: 1.053537e-01	ci left: 1.151575e-01	ci right 1.280638e-01	k: 1215	n:10000
PTPDC1   10000 perm   2 sec   (5399 perm/sec)   p_kst 1.215000e-01   p_cons 2.395000e-01   p_joint 2.566000e-01

Joint ci ratio: 5.789013e-02	ci left: 1.810732e-01	ci right 1.919181e-01	k: 3729	n:20000
Cons ci ratio: 4.885648e-02	ci left: 2.375148e-01	ci right 2.494598e-01	k: 4869	n:20000
KS ci ratio: 7.403058e-02	ci left: 1.183798e-01	ci right 1.275301e-01	k: 2458	n:20000
PTPDC1   20000 perm   4 sec   (4871 perm/sec)   p_kst 1.229000e-01   p_cons 2.434500e-01   p_joint 1.864500e-01

Outputting figure to mutsig2_images.part000000000140/PTPDC1.6_2543_20000_0.1229_0.24345_0.18645.png
                gene_name: PTPDC1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 33 percent done.
PTCD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.783297e-02	ci left: 6.554508e-01	ci right 6.740531e-01	k: 6648	n:10000
KS ci ratio: 8.164863e-03	ci left: 9.544052e-01	ci right 9.623250e-01	k: 9585	n:10000
PTCD2   10000 perm   2 sec   (6328 perm/sec)   p_kst 9.585000e-01   p_cons 6.648000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PTCD2.5_1207_10000_0.9585_0.6648_1.png
                gene_name: PTCD2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
PTCHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.025412e-01	ci left: 1.209243e-01	ci right 1.340936e-01	k: 1274	n:10000
Cons ci ratio: 8.109383e-02	ci left: 1.816632e-01	ci right 1.971182e-01	k: 1893	n:10000
KS ci ratio: 9.240747e-02	ci left: 1.454077e-01	ci right 1.595954e-01	k: 1524	n:10000
PTCHD1   10000 perm   2 sec   (5305 perm/sec)   p_kst 1.524000e-01   p_cons 1.893000e-01   p_joint 1.274000e-01

Joint ci ratio: 6.397498e-02	ci left: 1.529700e-01	ci right 1.631296e-01	k: 3160	n:20000
Cons ci ratio: 5.707340e-02	ci left: 1.853746e-01	ci right 1.963154e-01	k: 3816	n:20000
KS ci ratio: 6.319319e-02	ci left: 1.562270e-01	ci right 1.664716e-01	k: 3226	n:20000
PTCHD1   20000 perm   4 sec   (4748 perm/sec)   p_kst 1.613000e-01   p_cons 1.908000e-01   p_joint 1.580000e-01

Outputting figure to mutsig2_images.part000000000140/PTCHD1.5_2679_20000_0.1613_0.1908_0.158.png
                gene_name: PTCHD1
               theta_stop: 0.064 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 37 percent done.
PTCHD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.342318e-02	ci left: 8.889287e-01	ci right 9.010401e-01	k: 8951	n:10000
Cons ci ratio: 3.917845e-02	ci left: 4.903513e-01	ci right 5.100486e-01	k: 5002	n:10000
KS ci ratio: 7.978778e-03	ci left: 9.562867e-01	ci right 9.640423e-01	k: 9603	n:10000
PTCHD2   10000 perm   2 sec   (4803 perm/sec)   p_kst 9.603000e-01   p_cons 5.002000e-01   p_joint 8.951000e-01

Outputting figure to mutsig2_images.part000000000140/PTCHD2.5_4259_10000_0.9603_0.5002_0.8951.png
                gene_name: PTCHD2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 39 percent done.
PTER
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.716754e-02	ci left: 6.662236e-01	ci right 6.846741e-01	k: 6755	n:10000
Cons ci ratio: 9.874809e-03	ci left: 9.355802e-01	ci right 9.449613e-01	k: 9404	n:10000
KS ci ratio: 3.582708e-02	ci left: 5.349777e-01	ci right 5.545962e-01	k: 5448	n:10000
PTER   10000 perm   2 sec   (6055 perm/sec)   p_kst 5.448000e-01   p_cons 9.404000e-01   p_joint 6.755000e-01

Outputting figure to mutsig2_images.part000000000140/PTER.5_1066_10000_0.5448_0.9404_0.6755.png
                gene_name: PTER
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 41 percent done.
PTGFRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.262686e-01	ci left: 8.232386e-02	ci right 9.351756e-02	k: 878	n:10000
Cons ci ratio: 2.524631e-02	ci left: 6.977684e-01	ci right 7.157111e-01	k: 7068	n:10000
KS ci ratio: 2.980694e-01	ci left: 1.446512e-02	ci right 1.962175e-02	k: 169	n:10000
PTGFRN   10000 perm   2 sec   (5616 perm/sec)   p_kst 1.690000e-02   p_cons 7.068000e-01   p_joint 8.780000e-02

Joint ci ratio: 1.309216e-01	ci left: 4.008492e-02	ci right 4.574894e-02	k: 857	n:20000
Cons ci ratio: 1.814558e-02	ci left: 6.935952e-01	ci right 7.063466e-01	k: 14000	n:20000
KS ci ratio: 2.156633e-01	ci left: 1.449598e-02	ci right 1.804667e-02	k: 324	n:20000
PTGFRN   20000 perm   4 sec   (5046 perm/sec)   p_kst 1.620000e-02   p_cons 7.000000e-01   p_joint 4.285000e-02

Joint ci ratio: 1.108246e-01	ci left: 3.781053e-02	ci right 4.227910e-02	k: 1200	n:30000
Cons ci ratio: 1.485828e-02	ci left: 6.935728e-01	ci right 7.039887e-01	k: 20964	n:30000
KS ci ratio: 1.805657e-01	ci left: 1.406885e-02	ci right 1.689278e-02	k: 463	n:30000
PTGFRN   30000 perm   6 sec   (4832 perm/sec)   p_kst 1.543333e-02   p_cons 6.988000e-01   p_joint 4.000000e-02

Joint ci ratio: 7.260425e-02	ci left: 6.545355e-02	ci right 7.040940e-02	k: 2716	n:40000
Cons ci ratio: 1.286694e-02	ci left: 6.943023e-01	ci right 7.033188e-01	k: 27953	n:40000
KS ci ratio: 1.556949e-01	ci left: 1.438431e-02	ci right 1.683674e-02	k: 623	n:40000
PTGFRN   40000 perm   9 sec   (4682 perm/sec)   p_kst 1.557500e-02   p_cons 6.988250e-01   p_joint 6.790000e-02

Joint ci ratio: 8.094784e-02	ci left: 4.298364e-02	ci right 4.662944e-02	k: 2239	n:50000
Cons ci ratio: 1.152019e-02	ci left: 6.943557e-01	ci right 7.024212e-01	k: 34920	n:50000
KS ci ratio: 1.389868e-01	ci left: 1.457062e-02	ci right 1.676614e-02	k: 782	n:50000
PTGFRN   50000 perm   11 sec   (4568 perm/sec)   p_kst 1.564000e-02   p_cons 6.984000e-01   p_joint 4.478000e-02

Joint ci ratio: 7.418443e-02	ci left: 4.281468e-02	ci right 4.612956e-02	k: 2667	n:60000
Cons ci ratio: 1.052646e-02	ci left: 6.943085e-01	ci right 7.016724e-01	k: 41880	n:60000
KS ci ratio: 1.302710e-01	ci left: 1.389738e-02	ci right 1.584995e-02	k: 891	n:60000
PTGFRN   60000 perm   13 sec   (4473 perm/sec)   p_kst 1.485000e-02   p_cons 6.980000e-01   p_joint 4.445000e-02

Joint ci ratio: 7.497281e-02	ci left: 3.617480e-02	ci right 3.900655e-02	k: 2630	n:70000
Cons ci ratio: 9.752552e-03	ci left: 6.942826e-01	ci right 7.011010e-01	k: 48839	n:70000
KS ci ratio: 1.226371e-01	ci left: 1.350279e-02	ci right 1.528066e-02	k: 1006	n:70000
PTGFRN   70000 perm   16 sec   (4378 perm/sec)   p_kst 1.437143e-02   p_cons 6.977000e-01   p_joint 3.757143e-02

Joint ci ratio: 7.298903e-02	ci left: 3.352837e-02	ci right 3.608051e-02	k: 2783	n:80000
Cons ci ratio: 9.109172e-03	ci left: 6.951311e-01	ci right 7.015046e-01	k: 55866	n:80000
KS ci ratio: 1.153722e-01	ci left: 1.340368e-02	ci right 1.505682e-02	k: 1137	n:80000
PTGFRN   80000 perm   19 sec   (4297 perm/sec)   p_kst 1.421250e-02   p_cons 6.983250e-01   p_joint 3.478750e-02

Joint ci ratio: 7.004039e-02	ci left: 3.245407e-02	ci right 3.482055e-02	k: 3026	n:90000
Cons ci ratio: 8.588726e-03	ci left: 6.952894e-01	ci right 7.012978e-01	k: 62847	n:90000
KS ci ratio: 1.086987e-01	ci left: 1.346960e-02	ci right 1.502861e-02	k: 1281	n:90000
PTGFRN   90000 perm   22 sec   (4179 perm/sec)   p_kst 1.423333e-02   p_cons 6.983000e-01   p_joint 3.362222e-02

Joint ci ratio: 6.382510e-02	ci left: 3.518861e-02	ci right 3.751838e-02	k: 3634	n:100000
Cons ci ratio: 8.147986e-03	ci left: 6.954444e-01	ci right 7.011440e-01	k: 69830	n:100000
KS ci ratio: 1.035063e-01	ci left: 1.340759e-02	ci right 1.488079e-02	k: 1413	n:100000
PTGFRN   100000 perm   24 sec   (4109 perm/sec)   p_kst 1.413000e-02   p_cons 6.983000e-01   p_joint 3.634000e-02

Joint ci ratio: 5.812944e-02	ci left: 3.854479e-02	ci right 4.086138e-02	k: 4366	n:110000
Cons ci ratio: 7.776850e-03	ci left: 6.951403e-01	ci right 7.005765e-01	k: 76765	n:110000
KS ci ratio: 9.819117e-02	ci left: 1.358007e-02	ci right 1.499117e-02	k: 1570	n:110000
PTGFRN   110000 perm   27 sec   (4040 perm/sec)   p_kst 1.427273e-02   p_cons 6.978636e-01   p_joint 3.969091e-02

Outputting figure to mutsig2_images.part000000000140/PTGFRN.5_2676_110000_0.014273_0.69786_0.039691.png
                gene_name: PTGFRN
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.041 

Current progress: 43 percent done.
PTGIS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.292450e-02	ci left: 5.765733e-01	ci right 5.959764e-01	k: 5863	n:10000
Cons ci ratio: 2.264382e-02	ci left: 7.411889e-01	ci right 7.582654e-01	k: 7498	n:10000
KS ci ratio: 5.084582e-02	ci left: 3.632113e-01	ci right 3.822629e-01	k: 3727	n:10000
PTGIS   10000 perm   2 sec   (5353 perm/sec)   p_kst 3.727000e-01   p_cons 7.498000e-01   p_joint 5.863000e-01

Outputting figure to mutsig2_images.part000000000140/PTGIS.5_1543_10000_0.3727_0.7498_0.5863.png
                gene_name: PTGIS
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 45 percent done.
PTK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.265357e-02	ci left: 4.479986e-01	ci right 4.676260e-01	k: 4578	n:10000
Cons ci ratio: 9.759937e-02	ci left: 1.320796e-01	ci right 1.457315e-01	k: 1388	n:10000
KS ci ratio: 3.515339e-02	ci left: 5.443933e-01	ci right 5.639751e-01	k: 5542	n:10000
PTK2   10000 perm   2 sec   (5095 perm/sec)   p_kst 5.542000e-01   p_cons 1.388000e-01   p_joint 4.578000e-01

Outputting figure to mutsig2_images.part000000000140/PTK2.5_3349_10000_0.5542_0.1388_0.4578.png
                gene_name: PTK2
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 47 percent done.
PTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.213094e-02	ci left: 7.497846e-01	ci right 7.666647e-01	k: 7583	n:10000
KS ci ratio: 3.423102e-02	ci left: 5.575209e-01	ci right 5.770399e-01	k: 5673	n:10000
PTN   10000 perm   2 sec   (5963 perm/sec)   p_kst 5.673000e-01   p_cons 7.583000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PTN.5_523_10000_0.5673_0.7583_1.png
                gene_name: PTN
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
PTPN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.852255e-02	ci left: 8.097874e-01	ci right 8.250272e-01	k: 8175	n:10000
Cons ci ratio: 5.564151e-02	ci left: 3.223729e-01	ci right 3.409253e-01	k: 3316	n:10000
KS ci ratio: 1.511547e-02	ci left: 8.638635e-01	ci right 8.771198e-01	k: 8706	n:10000
PTPN1   10000 perm   2 sec   (5853 perm/sec)   p_kst 8.706000e-01   p_cons 3.316000e-01   p_joint 8.175000e-01

Outputting figure to mutsig2_images.part000000000140/PTPN1.5_1348_10000_0.8706_0.3316_0.8175.png
                gene_name: PTPN1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 51 percent done.
PTPN11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.348876e-02	ci left: 7.270405e-01	ci right 7.444219e-01	k: 7358	n:10000
KS ci ratio: 1.326553e-02	ci left: 8.911840e-01	ci right 9.031835e-01	k: 8973	n:10000
PTPN11   10000 perm   2 sec   (6200 perm/sec)   p_kst 8.973000e-01   p_cons 7.358000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PTPN11.5_1842_10000_0.8973_0.7358_1.png
                gene_name: PTPN11
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
PTPN23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.542886e-02	ci left: 3.240605e-01	ci right 3.426367e-01	k: 3333	n:10000
Cons ci ratio: 9.751786e-02	ci left: 1.322754e-01	ci right 1.459356e-01	k: 1390	n:10000
KS ci ratio: 3.785336e-02	ci left: 5.075522e-01	ci right 5.272376e-01	k: 5174	n:10000
PTPN23   10000 perm   2 sec   (4662 perm/sec)   p_kst 5.174000e-01   p_cons 1.390000e-01   p_joint 3.333000e-01

Outputting figure to mutsig2_images.part000000000140/PTPN23.5_5011_10000_0.5174_0.139_0.3333.png
                gene_name: PTPN23
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 55 percent done.
PTBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.189691e-02	ci left: 4.568828e-01	ci right 4.765366e-01	k: 4667	n:10000
KS ci ratio: 1.386890e-02	ci left: 8.824747e-01	ci right 8.948979e-01	k: 8888	n:10000
PTBP2   10000 perm   2 sec   (6281 perm/sec)   p_kst 8.888000e-01   p_cons 4.667000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PTBP2.4_1652_10000_0.8888_0.4667_1.png
                gene_name: PTBP2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
PTCD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.319849e-02	ci left: 3.424348e-01	ci right 3.612516e-01	k: 3518	n:10000
Cons ci ratio: 5.763252e-02	ci left: 3.070909e-01	ci right 3.254162e-01	k: 3162	n:10000
KS ci ratio: 6.409772e-02	ci left: 2.633947e-01	ci right 2.809382e-01	k: 2721	n:10000
PTCD3   10000 perm   2 sec   (5706 perm/sec)   p_kst 2.721000e-01   p_cons 3.162000e-01   p_joint 3.518000e-01

Outputting figure to mutsig2_images.part000000000140/PTCD3.4_2166_10000_0.2721_0.3162_0.3518.png
                gene_name: PTCD3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 59 percent done.
PTGR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.118833e-02	ci left: 7.655723e-01	ci right 7.820679e-01	k: 7739	n:10000
Cons ci ratio: 5.071561e-02	ci left: 3.644048e-01	ci right 3.834687e-01	k: 3739	n:10000
KS ci ratio: 2.839059e-02	ci left: 6.464944e-01	ci right 6.652148e-01	k: 6559	n:10000
PTGR1   10000 perm   2 sec   (6150 perm/sec)   p_kst 6.559000e-01   p_cons 3.739000e-01   p_joint 7.739000e-01

Outputting figure to mutsig2_images.part000000000140/PTGR1.4_1057_10000_0.6559_0.3739_0.7739.png
                gene_name: PTGR1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 61 percent done.
PTPN22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.398767e-02	ci left: 5.610295e-01	ci right 5.805293e-01	k: 5708	n:10000
Cons ci ratio: 1.312124e-02	ci left: 8.932351e-01	ci right 9.051312e-01	k: 8993	n:10000
KS ci ratio: 6.528310e-02	ci left: 2.562705e-01	ci right 2.736666e-01	k: 2649	n:10000
PTPN22   10000 perm   2 sec   (5887 perm/sec)   p_kst 2.649000e-01   p_cons 8.993000e-01   p_joint 5.708000e-01

Outputting figure to mutsig2_images.part000000000140/PTPN22.4_2531_10000_0.2649_0.8993_0.5708.png
                gene_name: PTPN22
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 63 percent done.
PSMD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.109475e-02	ci left: 9.205911e-01	ci right 9.309592e-01	k: 9259	n:10000
Cons ci ratio: 3.878641e-03	ci left: 9.882892e-01	ci right 9.922172e-01	k: 9904	n:10000
KS ci ratio: 4.420689e-02	ci left: 4.303394e-01	ci right 4.498955e-01	k: 4401	n:10000
PSMD3   10000 perm   2 sec   (6275 perm/sec)   p_kst 4.401000e-01   p_cons 9.904000e-01   p_joint 9.259000e-01

Outputting figure to mutsig2_images.part000000000140/PSMD3.3_1653_10000_0.4401_0.9904_0.9259.png
                gene_name: PSMD3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 65 percent done.
PSMD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.918069e-02	ci left: 3.788311e-01	ci right 3.980340e-01	k: 3884	n:10000
Cons ci ratio: 2.169017e-02	ci left: 7.571705e-01	ci right 7.738746e-01	k: 7656	n:10000
KS ci ratio: 5.645451e-02	ci left: 3.160206e-01	ci right 3.344813e-01	k: 3252	n:10000
PSMD6   10000 perm   2 sec   (6359 perm/sec)   p_kst 3.252000e-01   p_cons 7.656000e-01   p_joint 3.884000e-01

Outputting figure to mutsig2_images.part000000000140/PSMD6.3_1202_10000_0.3252_0.7656_0.3884.png
                gene_name: PSMD6
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 67 percent done.
PSMF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.849801e-02	ci left: 2.381767e-01	ci right 2.551711e-01	k: 2466	n:10000
Cons ci ratio: 3.010278e-02	ci left: 6.194455e-01	ci right 6.384793e-01	k: 6290	n:10000
KS ci ratio: 8.729533e-02	ci left: 1.604251e-01	ci right 1.751689e-01	k: 1677	n:10000
PSMF1   10000 perm   1 sec   (6763 perm/sec)   p_kst 1.677000e-01   p_cons 6.290000e-01   p_joint 2.466000e-01

Outputting figure to mutsig2_images.part000000000140/PSMF1.3_844_10000_0.1677_0.629_0.2466.png
                gene_name: PSMF1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 69 percent done.
PSPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.101891e-02	ci left: 6.052801e-01	ci right 6.244529e-01	k: 6149	n:10000
Cons ci ratio: 5.623661e-02	ci left: 3.177077e-01	ci right 3.361932e-01	k: 3269	n:10000
KS ci ratio: 3.506812e-02	ci left: 5.455956e-01	ci right 5.651722e-01	k: 5554	n:10000
PSPC1   10000 perm   2 sec   (6512 perm/sec)   p_kst 5.554000e-01   p_cons 3.269000e-01   p_joint 6.149000e-01

Outputting figure to mutsig2_images.part000000000140/PSPC1.3_1608_10000_0.5554_0.3269_0.6149.png
                gene_name: PSPC1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.62 

Current progress: 71 percent done.
PTGS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.793680e-02	ci left: 5.064518e-01	ci right 5.261387e-01	k: 5163	n:10000
KS ci ratio: 2.599129e-02	ci left: 6.854671e-01	ci right 7.036194e-01	k: 6946	n:10000
PTGS2   10000 perm   2 sec   (6417 perm/sec)   p_kst 6.946000e-01   p_cons 5.163000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PTGS2.3_1855_10000_0.6946_0.5163_1.png
                gene_name: PTGS2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
PTH1R
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.564455e-02	ci left: 1.657308e-01	ci right 1.806601e-01	k: 1731	n:10000
Cons ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
KS ci ratio: 1.833676e-01	ci left: 3.968114e-02	ci right 4.778736e-02	k: 436	n:10000
PTH1R   10000 perm   2 sec   (5943 perm/sec)   p_kst 4.360000e-02   p_cons 7.400000e-02   p_joint 1.731000e-01

Joint ci ratio: 7.947324e-02	ci left: 1.041236e-01	ci right 1.127906e-01	k: 2168	n:20000
Cons ci ratio: 9.637342e-02	ci left: 7.270641e-02	ci right 8.011730e-02	k: 1527	n:20000
KS ci ratio: 1.292772e-01	ci left: 4.110215e-02	ci right 4.683139e-02	k: 878	n:20000
PTH1R   20000 perm   4 sec   (5345 perm/sec)   p_kst 4.390000e-02   p_cons 7.635000e-02   p_joint 1.084000e-01

Joint ci ratio: 1.147108e-01	ci left: 3.531357e-02	ci right 3.964326e-02	k: 1123	n:30000
Cons ci ratio: 7.969111e-02	ci left: 7.165145e-02	ci right 7.763124e-02	k: 2238	n:30000
KS ci ratio: 1.045433e-01	ci left: 4.242166e-02	ci right 4.713367e-02	k: 1342	n:30000
PTH1R   30000 perm   6 sec   (5106 perm/sec)   p_kst 4.473333e-02   p_cons 7.460000e-02   p_joint 3.743333e-02

Joint ci ratio: 7.688196e-02	ci left: 5.867404e-02	ci right 6.338994e-02	k: 2440	n:40000
Cons ci ratio: 6.865918e-02	ci left: 7.275707e-02	ci right 7.795477e-02	k: 3013	n:40000
KS ci ratio: 8.956442e-02	ci left: 4.364954e-02	ci right 4.776673e-02	k: 1827	n:40000
PTH1R   40000 perm   8 sec   (4946 perm/sec)   p_kst 4.567500e-02   p_cons 7.532500e-02   p_joint 6.100000e-02

Outputting figure to mutsig2_images.part000000000140/PTH1R.3_1838_40000_0.045675_0.075325_0.061.png
                gene_name: PTH1R
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.063 

Current progress: 76 percent done.
PSMD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.991862e-02	ci left: 7.867494e-01	ci right 8.026785e-01	k: 7948	n:10000
Cons ci ratio: 1.070219e-02	ci left: 9.255458e-01	ci right 9.356016e-01	k: 9307	n:10000
KS ci ratio: 5.338560e-02	ci left: 3.408451e-01	ci right 3.596422e-01	k: 3502	n:10000
PSMD5   10000 perm   2 sec   (6534 perm/sec)   p_kst 3.502000e-01   p_cons 9.307000e-01   p_joint 7.948000e-01

Outputting figure to mutsig2_images.part000000000140/PSMD5.2_1555_10000_0.3502_0.9307_0.7948.png
                gene_name: PSMD5
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 78 percent done.
PSME3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.138321e-03	ci left: 9.804856e-01	ci right 9.856275e-01	k: 9832	n:10000
KS ci ratio: 7.050957e-02	ci left: 2.277054e-01	ci right 2.444486e-01	k: 2360	n:10000
PSME3   10000 perm   1 sec   (6686 perm/sec)   p_kst 2.360000e-01   p_cons 9.832000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PSME3.2_848_10000_0.236_0.9832_1.png
                gene_name: PSME3
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
PSTK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.212039e-02	ci left: 9.070994e-01	ci right 9.182588e-01	k: 9128	n:10000
Cons ci ratio: 5.679055e-02	ci left: 3.134405e-01	ci right 3.318629e-01	k: 3226	n:10000
KS ci ratio: 4.615168e-02	ci left: 4.093044e-01	ci right 4.287428e-01	k: 4190	n:10000
PSTK   10000 perm   1 sec   (6721 perm/sec)   p_kst 4.190000e-01   p_cons 3.226000e-01   p_joint 9.128000e-01

Outputting figure to mutsig2_images.part000000000140/PSTK.2_1071_10000_0.419_0.3226_0.9128.png
                gene_name: PSTK
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 82 percent done.
PTAR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.852255e-02	ci left: 8.097874e-01	ci right 8.250272e-01	k: 8175	n:10000
KS ci ratio: 4.770216e-02	ci left: 3.933658e-01	ci right 4.126907e-01	k: 4030	n:10000
PTAR1   10000 perm   2 sec   (6194 perm/sec)   p_kst 4.030000e-01   p_cons 8.175000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000140/PTAR1.2_1241_10000_0.403_0.8175_1.png
                gene_name: PTAR1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
PTCRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.353110e-02	ci left: 2.130972e-01	ci right 2.294655e-01	k: 2212	n:10000
Cons ci ratio: 1.258765e-01	ci left: 8.280946e-02	ci right 9.403165e-02	k: 883	n:10000
KS ci ratio: 1.148566e-02	ci left: 9.155397e-01	ci right 9.262136e-01	k: 9210	n:10000
PTCRA   10000 perm   1 sec   (6863 perm/sec)   p_kst 9.210000e-01   p_cons 8.830000e-02   p_joint 2.212000e-01

Joint ci ratio: 7.472519e-02	ci left: 1.164121e-01	ci right 1.254984e-01	k: 2418	n:20000
Cons ci ratio: 8.452258e-02	ci left: 9.298115e-02	ci right 1.012364e-01	k: 1941	n:20000
KS ci ratio: 8.019036e-03	ci left: 9.190141e-01	ci right 9.264624e-01	k: 18456	n:20000
PTCRA   20000 perm   3 sec   (6039 perm/sec)   p_kst 9.228000e-01   p_cons 9.705000e-02   p_joint 1.209000e-01

Outputting figure to mutsig2_images.part000000000140/PTCRA.2_862_20000_0.9228_0.09705_0.1209.png
                gene_name: PTCRA
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.093 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 86 percent done.
PTGR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.499009e-02	ci left: 5.466977e-01	ci right 5.662694e-01	k: 5565	n:10000
Cons ci ratio: 7.595156e-03	ci left: 9.600562e-01	ci right 9.674704e-01	k: 9639	n:10000
KS ci ratio: 1.504075e-01	ci left: 5.879809e-02	ci right 6.845803e-02	k: 635	n:10000
PTGR2   10000 perm   2 sec   (6647 perm/sec)   p_kst 6.350000e-02   p_cons 9.639000e-01   p_joint 5.565000e-01

Joint ci ratio: 3.726903e-02	ci left: 3.494600e-01	ci right 3.627819e-01	k: 7122	n:20000
Cons ci ratio: 5.660996e-03	ci left: 9.571915e-01	ci right 9.626738e-01	k: 19200	n:20000
KS ci ratio: 1.077194e-01	ci left: 5.874541e-02	ci right 6.548259e-02	k: 1241	n:20000
PTGR2   20000 perm   3 sec   (5889 perm/sec)   p_kst 6.205000e-02   p_cons 9.600000e-01   p_joint 3.561000e-01

Joint ci ratio: 2.260687e-02	ci left: 4.948589e-01	ci right 5.062076e-01	k: 15016	n:30000
Cons ci ratio: 4.623381e-03	ci left: 9.576867e-01	ci right 9.621570e-01	k: 28799	n:30000
KS ci ratio: 8.820587e-02	ci left: 5.903581e-02	ci right 6.451610e-02	k: 1852	n:30000
PTGR2   30000 perm   5 sec   (5591 perm/sec)   p_kst 6.173333e-02   p_cons 9.599667e-01   p_joint 5.005333e-01

Outputting figure to mutsig2_images.part000000000140/PTGR2.2_1092_30000_0.061733_0.95997_0.50053.png
                gene_name: PTGR2
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 88 percent done.
PTH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.744606e-02	ci left: 8.272725e-01	ci right 8.419321e-01	k: 8347	n:10000
Cons ci ratio: 7.849617e-02	ci left: 1.917059e-01	ci right 2.074695e-01	k: 1995	n:10000
KS ci ratio: 5.222166e-02	ci left: 3.508823e-01	ci right 3.697992e-01	k: 3603	n:10000
PTH   10000 perm   1 sec   (7365 perm/sec)   p_kst 3.603000e-01   p_cons 1.995000e-01   p_joint 8.347000e-01

Outputting figure to mutsig2_images.part000000000140/PTH.2_356_10000_0.3603_0.1995_0.8347.png
                gene_name: PTH
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 90 percent done.
PTH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.357978e-02	ci left: 8.866742e-01	ci right 8.988959e-01	k: 8929	n:10000
Cons ci ratio: 2.420449e-03	ci left: 9.949036e-01	ci right 9.973936e-01	k: 9963	n:10000
KS ci ratio: 1.809928e-02	ci left: 8.166970e-01	ci right 8.317137e-01	k: 8243	n:10000
PTH2   10000 perm   1 sec   (7069 perm/sec)   p_kst 8.243000e-01   p_cons 9.963000e-01   p_joint 8.929000e-01

Outputting figure to mutsig2_images.part000000000140/PTH2.2_311_10000_0.8243_0.9963_0.8929.png
                gene_name: PTH2
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 92 percent done.
PTOV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.423637e-02	ci left: 1.704491e-01	ci right 1.855389e-01	k: 1779	n:10000
Cons ci ratio: 4.339117e-02	ci left: 4.395167e-01	ci right 4.591129e-01	k: 4493	n:10000
KS ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
PTOV1   10000 perm   2 sec   (6041 perm/sec)   p_kst 1.072000e-01   p_cons 4.493000e-01   p_joint 1.779000e-01

Joint ci ratio: 6.278765e-02	ci left: 1.579546e-01	ci right 1.682436e-01	k: 3261	n:20000
Cons ci ratio: 3.062907e-02	ci left: 4.432876e-01	ci right 4.571269e-01	k: 9004	n:20000
KS ci ratio: 8.053930e-02	ci left: 1.016188e-01	ci right 1.101961e-01	k: 2117	n:20000
PTOV1   20000 perm   4 sec   (5543 perm/sec)   p_kst 1.058500e-01   p_cons 4.502000e-01   p_joint 1.630500e-01

Outputting figure to mutsig2_images.part000000000140/PTOV1.2_1299_20000_0.10585_0.4502_0.16305.png
                gene_name: PTOV1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 94 percent done.
PTPLAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.087703e-02	ci left: 2.840908e-01	ci right 3.020299e-01	k: 2930	n:10000
Cons ci ratio: 9.150557e-03	ci left: 9.438819e-01	ci right 9.526547e-01	k: 9484	n:10000
KS ci ratio: 1.111015e-01	ci left: 1.045169e-01	ci right 1.169109e-01	k: 1106	n:10000
PTPLAD2   10000 perm   1 sec   (6946 perm/sec)   p_kst 1.106000e-01   p_cons 9.484000e-01   p_joint 2.930000e-01

Joint ci ratio: 5.770006e-02	ci left: 1.820619e-01	ci right 1.929291e-01	k: 3749	n:20000
Cons ci ratio: 6.487730e-03	ci left: 9.449350e-01	ci right 9.511340e-01	k: 18962	n:20000
KS ci ratio: 7.798896e-02	ci left: 1.077592e-01	ci right 1.165539e-01	k: 2242	n:20000
PTPLAD2   20000 perm   3 sec   (6115 perm/sec)   p_kst 1.121000e-01   p_cons 9.481000e-01   p_joint 1.874500e-01

Outputting figure to mutsig2_images.part000000000140/PTPLAD2.2_727_20000_0.1121_0.9481_0.18745.png
                gene_name: PTPLAD2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 96 percent done.
PTPMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.420220e-02	ci left: 7.151243e-01	ci right 7.327451e-01	k: 7240	n:10000
Cons ci ratio: 3.842576e-02	ci left: 5.000504e-01	ci right 5.197438e-01	k: 5099	n:10000
KS ci ratio: 6.805859e-02	ci left: 2.405485e-01	ci right 2.575979e-01	k: 2490	n:10000
PTPMT1   10000 perm   1 sec   (6877 perm/sec)   p_kst 2.490000e-01   p_cons 5.099000e-01   p_joint 7.240000e-01

Outputting figure to mutsig2_images.part000000000140/PTPMT1.2_727_10000_0.249_0.5099_0.724.png
                gene_name: PTPMT1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 98 percent done.
PTPN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.946119e-02	ci left: 6.294971e-01	ci right 6.484219e-01	k: 6390	n:10000
Cons ci ratio: 7.370219e-02	ci left: 2.123080e-01	ci right 2.286552e-01	k: 2204	n:10000
KS ci ratio: 6.853489e-02	ci left: 2.379790e-01	ci right 2.549689e-01	k: 2464	n:10000
PTPN2   10000 perm   2 sec   (6553 perm/sec)   p_kst 2.464000e-01   p_cons 2.204000e-01   p_joint 6.390000e-01

Outputting figure to mutsig2_images.part000000000140/PTPN2.2_1310_10000_0.2464_0.2204_0.639.png
                gene_name: PTPN2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000140
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 140 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1650>
Subject: Job 9894099: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1650>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000141> was used as the working directory.
Started at Sat Oct  6 00:26:42 2012
Results reported at Sat Oct  6 02:08:24 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000141.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000141.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 141  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000141.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   6202.73 sec.
    Max Memory :      3528 MB
    Max Swap   :      5971 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
141
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 141
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 141: processing genes 12622 - 12711
Calculating significance of each gene.
Using projection method.
12622	PTPN3	5.527671e-01
12623	PTPN4	2.307204e-01
12624	PTPN5	9.611376e-01
12625	PTPN6	6.768891e-01
12626	PTPN7	6.647366e-01
12627	PTPN9	4.775679e-01
12628	PTPRA	8.604385e-01
12629	PTPRB	9.897735e-01
12630	PTPRC	4.649077e-02
12631	PTPRCAP	1
12632	PTPRD	3.295442e-01
12633	PTPRE	5.083780e-01
12634	PTPRF	7.033111e-01
12635	PTPRG	2.548335e-01
12636	PTPRH	7.020025e-01
12637	PTPRJ	9.131192e-01
12638	PTPRK	8.791145e-02
12639	PTPRM	6.044231e-06
12640	PTPRN	5.062785e-01
12641	PTPRN2	1.911724e-01
12642	PTPRO	5.395113e-01
12643	PTPRR	4.980512e-01
12644	PTPRS	6.847778e-01
12645	PTPRT	7.105597e-03
12646	PTPRU	1.484637e-01
In gene PTPRZ1 the following bins exceed PROBCAP:
    COAD-AA-A00W	categ 6	N = 7068    n = 1	mu =   1.38e-07
12647	PTPRZ1	1.881964e-01
12648	PTRF	9.700291e-01
12649	PTRH1	1
12650	PTRH2	1
12651	PTS	1
12652	PTTG1	6.119985e-01
12653	PTTG1IP	1
12654	PTTG2	1
12655	PTX3	1.312641e-01
12656	PTX4	7.086554e-01
12657	PUF60	1
12658	PUM1	5.673636e-01
12659	PUM2	5.967381e-01
12660	PURA	1
12661	PURB	9.209708e-01
12662	PURG	4.730740e-01
12663	PUS1	8.769421e-01
12664	PUS10	4.758669e-01
12665	PUS3	5.209166e-01
12666	PUS7	2.234944e-02
12667	PUS7L	2.415964e-01
12668	PUSL1	1
12669	PVALB	1
12670	PVR	8.264530e-01
12671	PVRIG	1
12672	PVRL1	2.139311e-01
12673	PVRL2	2.942401e-01
12674	PVRL3	7.139841e-01
12675	PVRL4	2.730549e-01
12676	PWP1	2.181428e-03
12677	PWP2	3.841991e-01
12678	PWWP2A	9.644164e-01
12679	PWWP2B	8.967667e-01
12680	PXDN	1.421918e-01
12681	PXDNL	1.499150e-02
12682	PXK	9.571501e-01
12683	PXMP2	2.343235e-01
12684	PXMP4	5.469201e-01
12685	PXN	1
12686	PXT1	1
12687	PYCARD	1
12688	PYCR1	1
12689	PYCR2	1
12690	PYCRL	1
12691	PYDC1	4.884958e-01
12692	PYDC2	1
12693	PYGB	8.475983e-01
12694	PYGL	9.802856e-01
12695	PYGM	8.291370e-01
12696	PYGO1	6.661340e-02
12697	PYGO2	2.688323e-01
12698	PYHIN1	1.717244e-02
12699	PYROXD1	6.305324e-01
12700	PYROXD2	6.279881e-01
12701	PYY	1
12702	PZP	4.534677e-02
12703	ProSAPiP1	4.693208e-01
12704	QARS	3.856886e-02
12705	QDPR	1
12706	QKI	2.092020e-02
12707	QPCT	5.776980e-01
12708	QPCTL	1
12709	QPRT	7.663049e-01
12710	QRFP	1
12711	QRFPR	3.011804e-03
Done

Running MutSig 2:
Scatter job 141: processing genes 12622 - 12711
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
PTPRM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.119962e-02	ci left: 1.812696e-01	ci right 1.967120e-01	k: 1889	n:10000
Cons ci ratio: 8.618673e-02	ci left: 1.639619e-01	ci right 1.788300e-01	k: 1713	n:10000
KS ci ratio: 6.744565e-02	ci left: 2.439092e-01	ci right 2.610352e-01	k: 2524	n:10000
PTPRM   10000 perm   3 sec   (3724 perm/sec)   p_kst 2.524000e-01   p_cons 1.713000e-01   p_joint 1.889000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRM.27_4530_10000_0.2524_0.1713_0.1889.png
                gene_name: PTPRM
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 2 percent done.
PTPRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.837970e-02	ci left: 8.121240e-01	ci right 8.272893e-01	k: 8198	n:10000
Cons ci ratio: 3.486977e-02	ci left: 5.484010e-01	ci right 5.679651e-01	k: 5582	n:10000
KS ci ratio: 2.702516e-02	ci left: 6.685399e-01	ci right 6.869564e-01	k: 6778	n:10000
PTPRC   10000 perm   2 sec   (4511 perm/sec)   p_kst 6.778000e-01   p_cons 5.582000e-01   p_joint 8.198000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRC.17_4054_10000_0.6778_0.5582_0.8198.png
                gene_name: PTPRC
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 3 percent done.
PTPRT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.213870e-02	ci left: 1.778256e-01	ci right 1.931581e-01	k: 1854	n:10000
Cons ci ratio: 1.474582e-01	ci left: 6.111415e-02	ci right 7.094050e-02	k: 659	n:10000
KS ci ratio: 4.463999e-02	ci left: 4.255526e-01	ci right 4.450851e-01	k: 4353	n:10000
PTPRT   10000 perm   3 sec   (3994 perm/sec)   p_kst 4.353000e-01   p_cons 6.590000e-02   p_joint 1.854000e-01

Joint ci ratio: 6.042364e-02	ci left: 1.685710e-01	ci right 1.791240e-01	k: 3476	n:20000
Cons ci ratio: 1.042709e-01	ci left: 6.254854e-02	ci right 6.947828e-02	k: 1319	n:20000
KS ci ratio: 3.251680e-02	ci left: 4.139449e-01	ci right 4.276781e-01	k: 8416	n:20000
PTPRT   20000 perm   5 sec   (3709 perm/sec)   p_kst 4.208000e-01   p_cons 6.595000e-02   p_joint 1.738000e-01

Joint ci ratio: 5.290984e-02	ci left: 1.505589e-01	ci right 1.587747e-01	k: 4639	n:30000
Cons ci ratio: 8.532216e-02	ci left: 6.292191e-02	ci right 6.856255e-02	k: 1971	n:30000
KS ci ratio: 2.639334e-02	ci left: 4.180993e-01	ci right 4.293155e-01	k: 12711	n:30000
PTPRT   30000 perm   8 sec   (3589 perm/sec)   p_kst 4.237000e-01   p_cons 6.570000e-02   p_joint 1.546333e-01

Outputting figure to mutsig2_images.part000000000141/PTPRT.17_4511_30000_0.4237_0.0657_0.15463.png
                gene_name: PTPRT
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 5 percent done.
PTPRZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.132751e-02	ci left: 6.005602e-01	ci right 6.197756e-01	k: 6102	n:10000
Cons ci ratio: 4.015418e-02	ci left: 4.780578e-01	ci right 4.977493e-01	k: 4879	n:10000
KS ci ratio: 4.400121e-02	ci left: 4.326334e-01	ci right 4.522002e-01	k: 4424	n:10000
PTPRZ1   10000 perm   3 sec   (3753 perm/sec)   p_kst 4.424000e-01   p_cons 4.879000e-01   p_joint 6.102000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRZ1.17_7068_10000_0.4424_0.4879_0.6102.png
                gene_name: PTPRZ1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 7 percent done.
PTPRD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.093572e-02	ci left: 1.822537e-01	ci right 1.977273e-01	k: 1899	n:10000
Cons ci ratio: 4.016222e-02	ci left: 4.779579e-01	ci right 4.976493e-01	k: 4878	n:10000
KS ci ratio: 1.031915e-01	ci left: 1.195555e-01	ci right 1.326632e-01	k: 1260	n:10000
PTPRD   10000 perm   2 sec   (4257 perm/sec)   p_kst 1.260000e-01   p_cons 4.878000e-01   p_joint 1.899000e-01

Joint ci ratio: 6.603416e-02	ci left: 1.448309e-01	ci right 1.547711e-01	k: 2995	n:20000
Cons ci ratio: 2.917078e-02	ci left: 4.675087e-01	ci right 4.813988e-01	k: 9489	n:20000
KS ci ratio: 7.384239e-02	ci left: 1.189210e-01	ci right 1.280888e-01	k: 2469	n:20000
PTPRD   20000 perm   5 sec   (3875 perm/sec)   p_kst 1.234500e-01   p_cons 4.744500e-01   p_joint 1.497500e-01

Outputting figure to mutsig2_images.part000000000141/PTPRD.16_5947_20000_0.12345_0.47445_0.14975.png
                gene_name: PTPRD
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 9 percent done.
PZP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.030047e-01	ci left: 1.199465e-01	ci right 1.330719e-01	k: 1264	n:10000
Cons ci ratio: 1.024032e-01	ci left: 1.212176e-01	ci right 1.344000e-01	k: 1277	n:10000
KS ci ratio: 8.921899e-02	ci left: 1.545332e-01	ci right 1.690644e-01	k: 1617	n:10000
PZP   10000 perm   2 sec   (4319 perm/sec)   p_kst 1.617000e-01   p_cons 1.277000e-01   p_joint 1.264000e-01

Joint ci ratio: 9.751825e-02	ci left: 7.109338e-02	ci right 7.843082e-02	k: 1494	n:20000
Cons ci ratio: 7.221701e-02	ci left: 1.237437e-01	ci right 1.330646e-01	k: 2567	n:20000
KS ci ratio: 6.298386e-02	ci left: 1.571155e-01	ci right 1.673829e-01	k: 3244	n:20000
PZP   20000 perm   5 sec   (3944 perm/sec)   p_kst 1.622000e-01   p_cons 1.283500e-01   p_joint 7.470000e-02

Outputting figure to mutsig2_images.part000000000141/PZP.16_4593_20000_0.1622_0.12835_0.0747.png
                gene_name: PZP
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.078 

Current progress: 10 percent done.
PXDN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.861921e-02	ci left: 1.912134e-01	ci right 2.069623e-01	k: 1990	n:10000
Cons ci ratio: 6.526634e-02	ci left: 2.563695e-01	ci right 2.737676e-01	k: 2650	n:10000
KS ci ratio: 9.427484e-02	ci left: 1.404072e-01	ci right 1.543988e-01	k: 1473	n:10000
PXDN   10000 perm   2 sec   (4377 perm/sec)   p_kst 1.473000e-01   p_cons 2.650000e-01   p_joint 1.990000e-01

Outputting figure to mutsig2_images.part000000000141/PXDN.15_4532_10000_0.1473_0.265_0.199.png
                gene_name: PXDN
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 12 percent done.
PXDNL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.438996e-02	ci left: 7.119950e-01	ci right 7.296762e-01	k: 7209	n:10000
KS ci ratio: 1.784894e-02	ci left: 8.207633e-01	ci right 8.356450e-01	k: 8283	n:10000
PXDNL   10000 perm   2 sec   (4427 perm/sec)   p_kst 8.283000e-01   p_cons 7.209000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/PXDNL.15_4484_10000_0.8283_0.7209_1.png
                gene_name: PXDNL
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
PTPRK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.570440e-02	ci left: 1.655342e-01	ci right 1.804568e-01	k: 1729	n:10000
Cons ci ratio: 3.935118e-02	ci left: 4.881520e-01	ci right 5.078491e-01	k: 4980	n:10000
KS ci ratio: 1.349556e-01	ci left: 7.252675e-02	ci right 8.312075e-02	k: 777	n:10000
PTPRK   10000 perm   2 sec   (4235 perm/sec)   p_kst 7.770000e-02   p_cons 4.980000e-01   p_joint 1.729000e-01

Joint ci ratio: 6.820389e-02	ci left: 1.368941e-01	ci right 1.466103e-01	k: 2834	n:20000
Cons ci ratio: 2.717582e-02	ci left: 5.028958e-01	ci right 5.168013e-01	k: 10197	n:20000
KS ci ratio: 9.342632e-02	ci left: 7.710809e-02	ci right 8.471428e-02	k: 1617	n:20000
PTPRK   20000 perm   5 sec   (3872 perm/sec)   p_kst 8.085000e-02   p_cons 5.098500e-01   p_joint 1.417000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRK.12_4465_20000_0.08085_0.50985_0.1417.png
                gene_name: PTPRK
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 16 percent done.
PTPRU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.899674e-02	ci left: 6.368375e-01	ci right 6.556772e-01	k: 6463	n:10000
Cons ci ratio: 4.336488e-02	ci left: 4.398160e-01	ci right 4.594134e-01	k: 4496	n:10000
KS ci ratio: 4.092516e-02	ci left: 4.685668e-01	ci right 4.882458e-01	k: 4784	n:10000
PTPRU   10000 perm   2 sec   (4705 perm/sec)   p_kst 4.784000e-01   p_cons 4.496000e-01   p_joint 6.463000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRU.12_4487_10000_0.4784_0.4496_0.6463.png
                gene_name: PTPRU
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 17 percent done.
PTPRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.427694e-02	ci left: 3.333947e-01	ci right 3.520970e-01	k: 3427	n:10000
Cons ci ratio: 3.944572e-02	ci left: 4.869525e-01	ci right 5.066494e-01	k: 4968	n:10000
KS ci ratio: 6.145491e-02	ci left: 2.802271e-01	ci right 2.980959e-01	k: 2891	n:10000
PTPRG   10000 perm   2 sec   (4243 perm/sec)   p_kst 2.891000e-01   p_cons 4.968000e-01   p_joint 3.427000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRG.11_4458_10000_0.2891_0.4968_0.3427.png
                gene_name: PTPRG
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 19 percent done.
PTPRF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.591030e-02	ci left: 8.516164e-01	ci right 8.653740e-01	k: 8586	n:10000
Cons ci ratio: 9.786555e-03	ci left: 9.366165e-01	ci right 9.459244e-01	k: 9414	n:10000
KS ci ratio: 2.348272e-02	ci left: 7.271416e-01	ci right 7.445209e-01	k: 7359	n:10000
PTPRF   10000 perm   2 sec   (4371 perm/sec)   p_kst 7.359000e-01   p_cons 9.414000e-01   p_joint 8.586000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRF.9_5852_10000_0.7359_0.9414_0.8586.png
                gene_name: PTPRF
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 21 percent done.
PTPRN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.049711e-02	ci left: 7.771196e-01	ci right 7.933139e-01	k: 7853	n:10000
Cons ci ratio: 4.052554e-02	ci left: 4.734617e-01	ci right 4.931480e-01	k: 4833	n:10000
KS ci ratio: 2.952506e-02	ci left: 6.284917e-01	ci right 6.474279e-01	k: 6380	n:10000
PTPRN2   10000 perm   2 sec   (4755 perm/sec)   p_kst 6.380000e-01   p_cons 4.833000e-01   p_joint 7.853000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRN2.9_3140_10000_0.638_0.4833_0.7853.png
                gene_name: PTPRN2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 22 percent done.
PTPRS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.447480e-02	ci left: 7.105819e-01	ci right 7.282901e-01	k: 7195	n:10000
Cons ci ratio: 6.303106e-02	ci left: 2.700268e-01	ci right 2.877022e-01	k: 2788	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
PTPRS   10000 perm   2 sec   (4383 perm/sec)   p_kst 1   p_cons 2.788000e-01   p_joint 7.195000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRS.9_5995_10000_1_0.2788_0.7195.png
                gene_name: PTPRS
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 24 percent done.
PYHIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.073996e-02	ci left: 7.730669e-01	ci right 7.893690e-01	k: 7813	n:10000
KS ci ratio: 2.328347e-02	ci left: 7.304755e-01	ci right 7.477850e-01	k: 7392	n:10000
PYHIN1   10000 perm   2 sec   (5630 perm/sec)   p_kst 7.392000e-01   p_cons 7.813000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/PYHIN1.9_1538_10000_0.7392_0.7813_1.png
                gene_name: PYHIN1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
QKI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.688919e-02	ci left: 4.016326e-01	ci right 4.210191e-01	k: 4113	n:10000
Cons ci ratio: 9.294744e-02	ci left: 1.439367e-01	ci right 1.580673e-01	k: 1509	n:10000
KS ci ratio: 3.300599e-02	ci left: 5.753695e-01	ci right 5.947809e-01	k: 5851	n:10000
QKI   10000 perm   2 sec   (5207 perm/sec)   p_kst 5.851000e-01   p_cons 1.509000e-01   p_joint 4.113000e-01

Outputting figure to mutsig2_images.part000000000141/QKI.9_1162_10000_0.5851_0.1509_0.4113.png
                gene_name: QKI
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 28 percent done.
PWP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.019438e-02	ci left: 4.775582e-01	ci right 4.972492e-01	k: 4874	n:10000
Cons ci ratio: 1.035845e-02	ci left: 9.297834e-01	ci right 9.395616e-01	k: 9348	n:10000
KS ci ratio: 5.071561e-02	ci left: 3.644048e-01	ci right 3.834687e-01	k: 3739	n:10000
PWP1   10000 perm   2 sec   (5323 perm/sec)   p_kst 3.739000e-01   p_cons 9.348000e-01   p_joint 4.874000e-01

Outputting figure to mutsig2_images.part000000000141/PWP1.8_1566_10000_0.3739_0.9348_0.4874.png
                gene_name: PWP1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 29 percent done.
QARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.071569e-02	ci left: 7.734721e-01	ci right 7.897635e-01	k: 7817	n:10000
Cons ci ratio: 4.795085e-02	ci left: 3.908763e-01	ci right 4.101817e-01	k: 4005	n:10000
KS ci ratio: 2.914909e-02	ci left: 6.344240e-01	ci right 6.532922e-01	k: 6439	n:10000
QARS   10000 perm   2 sec   (5370 perm/sec)   p_kst 6.439000e-01   p_cons 4.005000e-01   p_joint 7.817000e-01

Outputting figure to mutsig2_images.part000000000141/QARS.8_2424_10000_0.6439_0.4005_0.7817.png
                gene_name: QARS
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 31 percent done.
QRFPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.795200e-02	ci left: 5.062518e-01	ci right 5.259388e-01	k: 5161	n:10000
Cons ci ratio: 3.793680e-02	ci left: 5.064518e-01	ci right 5.261387e-01	k: 5163	n:10000
KS ci ratio: 5.986431e-02	ci left: 2.910276e-01	ci right 3.090890e-01	k: 3000	n:10000
QRFPR   10000 perm   2 sec   (5448 perm/sec)   p_kst 3.000000e-01   p_cons 5.163000e-01   p_joint 5.161000e-01

Outputting figure to mutsig2_images.part000000000141/QRFPR.8_1320_10000_0.3_0.5163_0.5161.png
                gene_name: QRFPR
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 33 percent done.
PTPN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.304723e-02	ci left: 3.437266e-01	ci right 3.625590e-01	k: 3531	n:10000
Cons ci ratio: 1.019464e-01	ci left: 1.221955e-01	ci right 1.354215e-01	k: 1287	n:10000
KS ci ratio: 6.070122e-02	ci left: 2.852798e-01	ci right 3.032402e-01	k: 2942	n:10000
PTPN3   10000 perm   2 sec   (4766 perm/sec)   p_kst 2.942000e-01   p_cons 1.287000e-01   p_joint 3.531000e-01

Joint ci ratio: 5.242097e-02	ci left: 2.127398e-01	ci right 2.242422e-01	k: 4369	n:20000
Cons ci ratio: 7.403058e-02	ci left: 1.183798e-01	ci right 1.275301e-01	k: 2458	n:20000
KS ci ratio: 4.342370e-02	ci left: 2.831708e-01	ci right 2.957905e-01	k: 5789	n:20000
PTPN3   20000 perm   5 sec   (4331 perm/sec)   p_kst 2.894500e-01   p_cons 1.229000e-01   p_joint 2.184500e-01

Outputting figure to mutsig2_images.part000000000141/PTPN3.7_2842_20000_0.28945_0.1229_0.21845.png
                gene_name: PTPN3
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 34 percent done.
PUS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.310842e-02	ci left: 7.334059e-01	ci right 7.506529e-01	k: 7421	n:10000
Cons ci ratio: 5.694681e-02	ci left: 3.122498e-01	ci right 3.306543e-01	k: 3214	n:10000
KS ci ratio: 4.232859e-02	ci left: 4.517915e-01	ci right 4.714309e-01	k: 4616	n:10000
PUS7   10000 perm   2 sec   (5253 perm/sec)   p_kst 4.616000e-01   p_cons 3.214000e-01   p_joint 7.421000e-01

Outputting figure to mutsig2_images.part000000000141/PUS7.7_2046_10000_0.4616_0.3214_0.7421.png
                gene_name: PUS7
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 36 percent done.
PUS7L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.903667e-02	ci left: 2.353112e-01	ci right 2.522383e-01	k: 2437	n:10000
Cons ci ratio: 2.928267e-02	ci left: 6.323123e-01	ci right 6.512050e-01	k: 6418	n:10000
KS ci ratio: 1.121871e-01	ci left: 1.026640e-01	ci right 1.149650e-01	k: 1087	n:10000
PUS7L   10000 perm   2 sec   (5501 perm/sec)   p_kst 1.087000e-01   p_cons 6.418000e-01   p_joint 2.437000e-01

Joint ci ratio: 4.871764e-02	ci left: 2.385560e-01	ci right 2.505184e-01	k: 4890	n:20000
Cons ci ratio: 2.052486e-02	ci left: 6.391760e-01	ci right 6.524816e-01	k: 12917	n:20000
KS ci ratio: 7.866204e-02	ci left: 1.060886e-01	ci right 1.148250e-01	k: 2208	n:20000
PUS7L   20000 perm   4 sec   (4965 perm/sec)   p_kst 1.104000e-01   p_cons 6.458500e-01   p_joint 2.445000e-01

Outputting figure to mutsig2_images.part000000000141/PUS7L.7_2138_20000_0.1104_0.64585_0.2445.png
                gene_name: PUS7L
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 38 percent done.
PTPN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.796083e-02	ci left: 3.907768e-01	ci right 4.100813e-01	k: 4004	n:10000
Cons ci ratio: 8.837333e-02	ci left: 1.570859e-01	ci right 1.717101e-01	k: 1643	n:10000
KS ci ratio: 3.696130e-02	ci left: 5.194597e-01	ci right 5.391232e-01	k: 5293	n:10000
PTPN4   10000 perm   2 sec   (4984 perm/sec)   p_kst 5.293000e-01   p_cons 1.643000e-01   p_joint 4.004000e-01

Outputting figure to mutsig2_images.part000000000141/PTPN4.6_2885_10000_0.5293_0.1643_0.4004.png
                gene_name: PTPN4
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 40 percent done.
PTPRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.764171e-02	ci left: 5.103535e-01	ci right 5.300347e-01	k: 5202	n:10000
Cons ci ratio: 1.668181e-02	ci left: 8.394879e-01	ci right 8.537096e-01	k: 8467	n:10000
KS ci ratio: 5.532926e-02	ci left: 3.248548e-01	ci right 3.434420e-01	k: 3341	n:10000
PTPRN   10000 perm   2 sec   (4877 perm/sec)   p_kst 3.341000e-01   p_cons 8.467000e-01   p_joint 5.202000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRN.6_3032_10000_0.3341_0.8467_0.5202.png
                gene_name: PTPRN
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 41 percent done.
PTPRO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.795959e-02	ci left: 5.061517e-01	ci right 5.258389e-01	k: 5160	n:10000
KS ci ratio: 1.645643e-02	ci left: 8.430535e-01	ci right 8.571419e-01	k: 8502	n:10000
PTPRO   10000 perm   2 sec   (4996 perm/sec)   p_kst 8.502000e-01   p_cons 5.160000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/PTPRO.6_3755_10000_0.8502_0.516_1.png
                gene_name: PTPRO
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
PUM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.372187e-02	ci left: 1.722191e-01	ci right 1.873680e-01	k: 1797	n:10000
Cons ci ratio: 2.942289e-02	ci left: 6.301003e-01	ci right 6.490183e-01	k: 6396	n:10000
KS ci ratio: 9.905341e-02	ci left: 1.286530e-01	ci right 1.421602e-01	k: 1353	n:10000
PUM1   10000 perm   2 sec   (5017 perm/sec)   p_kst 1.353000e-01   p_cons 6.396000e-01   p_joint 1.797000e-01

Outputting figure to mutsig2_images.part000000000141/PUM1.6_3651_10000_0.1353_0.6396_0.1797.png
                gene_name: PUM1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 45 percent done.
PUM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.270107e-02	ci left: 5.798839e-01	ci right 5.992639e-01	k: 5896	n:10000
Cons ci ratio: 9.028594e-03	ci left: 9.452335e-01	ci right 9.539023e-01	k: 9497	n:10000
KS ci ratio: 4.561562e-02	ci left: 4.149851e-01	ci right 4.344588e-01	k: 4247	n:10000
PUM2   10000 perm   2 sec   (5153 perm/sec)   p_kst 4.247000e-01   p_cons 9.497000e-01   p_joint 5.896000e-01

Outputting figure to mutsig2_images.part000000000141/PUM2.6_3275_10000_0.4247_0.9497_0.5896.png
                gene_name: PUM2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 47 percent done.
PVRL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.128566e-01	ci left: 2.930086e-02	ci right 3.637471e-02	k: 327	n:10000
Cons ci ratio: 2.794182e-01	ci left: 1.660112e-02	ci right 2.208394e-02	k: 192	n:10000
KS ci ratio: 1.259546e-01	ci left: 8.271234e-02	ci right 9.392883e-02	k: 882	n:10000
PVRL1   10000 perm   2 sec   (5500 perm/sec)   p_kst 8.820000e-02   p_cons 1.920000e-02   p_joint 3.270000e-02

Joint ci ratio: 1.598212e-01	ci left: 2.686219e-02	ci right 3.157601e-02	k: 583	n:20000
Cons ci ratio: 1.820756e-01	ci left: 2.058483e-02	ci right 2.475554e-02	k: 452	n:20000
KS ci ratio: 8.865284e-02	ci left: 8.508867e-02	ci right 9.303127e-02	k: 1780	n:20000
PVRL1   20000 perm   4 sec   (4970 perm/sec)   p_kst 8.900000e-02   p_cons 2.260000e-02   p_joint 2.915000e-02

Joint ci ratio: 1.108726e-01	ci left: 3.777809e-02	ci right 4.224489e-02	k: 1199	n:30000
Cons ci ratio: 1.557932e-01	ci left: 1.905463e-02	ci right 2.230579e-02	k: 619	n:30000
KS ci ratio: 7.258673e-02	ci left: 8.537492e-02	ci right 9.183834e-02	k: 2657	n:30000
PVRL1   30000 perm   6 sec   (4768 perm/sec)   p_kst 8.856667e-02   p_cons 2.063333e-02   p_joint 3.996667e-02

Joint ci ratio: 1.246563e-01	ci left: 2.261923e-02	ci right 2.565040e-02	k: 964	n:40000
Cons ci ratio: 1.397141e-01	ci left: 1.795011e-02	ci right 2.067031e-02	k: 771	n:40000
KS ci ratio: 6.281356e-02	ci left: 8.593124e-02	ci right 9.152863e-02	k: 3548	n:40000
PVRL1   40000 perm   9 sec   (4628 perm/sec)   p_kst 8.870000e-02   p_cons 1.927500e-02   p_joint 2.410000e-02

Joint ci ratio: 1.137010e-01	ci left: 2.189823e-02	ci right 2.455752e-02	k: 1160	n:50000
Cons ci ratio: 1.248326e-01	ci left: 1.813146e-02	ci right 2.056480e-02	k: 966	n:50000
KS ci ratio: 5.617011e-02	ci left: 8.626137e-02	ci right 9.126649e-02	k: 4437	n:50000
PVRL1   50000 perm   11 sec   (4515 perm/sec)   p_kst 8.874000e-02   p_cons 1.932000e-02   p_joint 2.320000e-02

Joint ci ratio: 1.108499e-01	ci left: 1.928378e-02	ci right 2.156294e-02	k: 1224	n:60000
Cons ci ratio: 1.147350e-01	ci left: 1.798736e-02	ci right 2.019284e-02	k: 1144	n:60000
KS ci ratio: 5.116341e-02	ci left: 8.683204e-02	ci right 9.140779e-02	k: 5346	n:60000
PVRL1   60000 perm   14 sec   (4423 perm/sec)   p_kst 8.910000e-02   p_cons 1.906667e-02   p_joint 2.040000e-02

Joint ci ratio: 9.619818e-02	ci left: 2.205562e-02	ci right 2.429843e-02	k: 1621	n:70000
Cons ci ratio: 1.065839e-01	ci left: 1.794581e-02	ci right 1.998005e-02	k: 1326	n:70000
KS ci ratio: 4.733970e-02	ci left: 8.709841e-02	ci right 9.133572e-02	k: 6244	n:70000
PVRL1   70000 perm   16 sec   (4342 perm/sec)   p_kst 8.920000e-02   p_cons 1.894286e-02   p_joint 2.315714e-02

Joint ci ratio: 9.882603e-02	ci left: 1.833347e-02	ci right 2.025161e-02	k: 1542	n:80000
Cons ci ratio: 1.001580e-01	ci left: 1.784569e-02	ci right 1.973943e-02	k: 1502	n:80000
KS ci ratio: 4.433734e-02	ci left: 8.703554e-02	ci right 9.099432e-02	k: 7120	n:80000
PVRL1   80000 perm   19 sec   (4266 perm/sec)   p_kst 8.900000e-02   p_cons 1.877500e-02   p_joint 1.927500e-02

Joint ci ratio: 9.284405e-02	ci left: 1.851972e-02	ci right 2.033367e-02	k: 1747	n:90000
Cons ci ratio: 9.511657e-02	ci left: 1.764049e-02	ci right 1.941296e-02	k: 1666	n:90000
KS ci ratio: 4.177055e-02	ci left: 8.726849e-02	ci right 9.100249e-02	k: 8021	n:90000
PVRL1   90000 perm   21 sec   (4192 perm/sec)   p_kst 8.912222e-02   p_cons 1.851111e-02   p_joint 1.941111e-02

Outputting figure to mutsig2_images.part000000000141/PVRL1.6_2024_90000_0.089122_0.018511_0.019411.png
                gene_name: PVRL1
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 48 percent done.
PTPRE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.574653e-02	ci left: 4.135897e-01	ci right 4.330550e-01	k: 4233	n:10000
KS ci ratio: 2.046065e-02	ci left: 7.777276e-01	ci right 7.939056e-01	k: 7859	n:10000
PTPRE   10000 perm   2 sec   (5443 perm/sec)   p_kst 7.859000e-01   p_cons 4.233000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/PTPRE.5_2218_10000_0.7859_0.4233_1.png
                gene_name: PTPRE
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
PTPRH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.087600e-02	ci left: 4.691661e-01	ci right 4.888461e-01	k: 4790	n:10000
Cons ci ratio: 3.110410e-02	ci left: 6.039745e-01	ci right 6.231593e-01	k: 6136	n:10000
KS ci ratio: 6.498281e-02	ci left: 2.580513e-01	ci right 2.754848e-01	k: 2667	n:10000
PTPRH   10000 perm   2 sec   (5314 perm/sec)   p_kst 2.667000e-01   p_cons 6.136000e-01   p_joint 4.790000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRH.5_3428_10000_0.2667_0.6136_0.479.png
                gene_name: PTPRH
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 52 percent done.
PTPRR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.363793e-02	ci left: 2.126039e-01	ci right 2.289591e-01	k: 2207	n:10000
Cons ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
KS ci ratio: 3.541734e-02	ci left: 5.406868e-01	ci right 5.602838e-01	k: 5505	n:10000
PTPRR   10000 perm   2 sec   (5554 perm/sec)   p_kst 5.505000e-01   p_cons 4.280000e-02   p_joint 2.207000e-01

Joint ci ratio: 1.010697e-01	ci left: 6.640396e-02	ci right 7.352168e-02	k: 1398	n:20000
Cons ci ratio: 1.392719e-01	ci left: 3.544087e-02	ci right 4.079449e-02	k: 761	n:20000
KS ci ratio: 2.537868e-02	ci left: 5.370163e-01	ci right 5.508709e-01	k: 10879	n:20000
PTPRR   20000 perm   4 sec   (4965 perm/sec)   p_kst 5.439500e-01   p_cons 3.805000e-02   p_joint 6.990000e-02

Joint ci ratio: 8.616707e-02	ci left: 6.174596e-02	ci right 6.733873e-02	k: 1935	n:30000
Cons ci ratio: 1.086289e-01	ci left: 3.933588e-02	ci right 4.388676e-02	k: 1247	n:30000
KS ci ratio: 2.081202e-02	ci left: 5.361414e-01	ci right 5.474505e-01	k: 16254	n:30000
PTPRR   30000 perm   6 sec   (4751 perm/sec)   p_kst 5.418000e-01   p_cons 4.156667e-02   p_joint 6.450000e-02

Joint ci ratio: 5.959728e-02	ci left: 9.468380e-02	ci right 1.005248e-01	k: 3903	n:40000
Cons ci ratio: 9.428289e-02	ci left: 3.946860e-02	ci right 4.339833e-02	k: 1656	n:40000
KS ci ratio: 1.807118e-02	ci left: 5.356009e-01	ci right 5.453932e-01	k: 21620	n:40000
PTPRR   40000 perm   9 sec   (4609 perm/sec)   p_kst 5.405000e-01   p_cons 4.140000e-02   p_joint 9.757500e-02

Outputting figure to mutsig2_images.part000000000141/PTPRR.5_2030_40000_0.5405_0.0414_0.097575.png
                gene_name: PTPRR
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 53 percent done.
PUS10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.809304e-02	ci left: 8.167986e-01	ci right 8.318120e-01	k: 8244	n:10000
Cons ci ratio: 4.916000e-02	ci left: 3.790301e-01	ci right 3.982348e-01	k: 3886	n:10000
KS ci ratio: 2.334384e-02	ci left: 7.294651e-01	ci right 7.467959e-01	k: 7382	n:10000
PUS10   10000 perm   2 sec   (5475 perm/sec)   p_kst 7.382000e-01   p_cons 3.886000e-01   p_joint 8.244000e-01

Outputting figure to mutsig2_images.part000000000141/PUS10.5_1658_10000_0.7382_0.3886_0.8244.png
                gene_name: PUS10
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 55 percent done.
PWP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
Cons ci ratio: 6.073045e-02	ci left: 2.850816e-01	ci right 3.030385e-01	k: 2940	n:10000
KS ci ratio: 7.677370e-01	ci left: 1.618501e-03	ci right 3.688296e-03	k: 25	n:10000
PWP2   10000 perm   2 sec   (5365 perm/sec)   p_kst 2.500000e-03   p_cons 2.940000e-01   p_joint 9.300000e-03

Joint ci ratio: 3.453633e-01	ci left: 5.296378e-03	ci right 7.550737e-03	k: 127	n:20000
Cons ci ratio: 4.279875e-02	ci left: 2.891320e-01	ci right 3.018275e-01	k: 5909	n:20000
KS ci ratio: 5.230852e-01	ci left: 2.072328e-03	ci right 3.578018e-03	k: 55	n:20000
PWP2   20000 perm   4 sec   (4813 perm/sec)   p_kst 2.750000e-03   p_cons 2.954500e-01   p_joint 6.350000e-03

Joint ci ratio: 2.065198e-01	ci left: 1.064047e-02	ci right 1.312207e-02	k: 355	n:30000
Cons ci ratio: 3.345459e-02	ci left: 3.086833e-01	ci right 3.192194e-01	k: 9418	n:30000
KS ci ratio: 4.404461e-01	ci left: 2.055718e-03	ci right 3.243871e-03	k: 78	n:30000
PWP2   30000 perm   7 sec   (4560 perm/sec)   p_kst 2.600000e-03   p_cons 3.139333e-01   p_joint 1.183333e-02

Joint ci ratio: 2.907077e-01	ci left: 3.867775e-03	ci right 5.205722e-03	k: 180	n:40000
Cons ci ratio: 3.065496e-02	ci left: 2.857054e-01	ci right 2.946251e-01	k: 11606	n:40000
KS ci ratio: 4.038368e-01	ci left: 1.876973e-03	ci right 2.847537e-03	k: 93	n:40000
PWP2   40000 perm   9 sec   (4317 perm/sec)   p_kst 2.325000e-03   p_cons 2.901500e-01   p_joint 4.500000e-03

Joint ci ratio: 2.655262e-01	ci left: 3.764073e-03	ci right 4.934623e-03	k: 216	n:50000
Cons ci ratio: 2.738640e-02	ci left: 2.866623e-01	ci right 2.946420e-01	k: 14532	n:50000
KS ci ratio: 3.574122e-01	ci left: 1.972016e-03	ci right 2.847358e-03	k: 119	n:50000
PWP2   50000 perm   12 sec   (4250 perm/sec)   p_kst 2.380000e-03   p_cons 2.906400e-01   p_joint 4.320000e-03

Joint ci ratio: 2.568604e-01	ci left: 3.370270e-03	ci right 4.378653e-03	k: 231	n:60000
Cons ci ratio: 2.505959e-02	ci left: 2.860390e-01	ci right 2.933147e-01	k: 17380	n:60000
KS ci ratio: 3.262717e-01	ci left: 2.009081e-03	ci right 2.806937e-03	k: 143	n:60000
PWP2   60000 perm   14 sec   (4174 perm/sec)   p_kst 2.383333e-03   p_cons 2.896667e-01   p_joint 3.850000e-03

Joint ci ratio: 2.403457e-01	ci left: 3.330881e-03	ci right 4.253860e-03	k: 264	n:70000
Cons ci ratio: 2.318043e-02	ci left: 2.866686e-01	ci right 2.934059e-01	k: 20302	n:70000
KS ci ratio: 2.994014e-01	ci left: 2.077566e-03	ci right 2.821779e-03	k: 170	n:70000
PWP2   70000 perm   17 sec   (4107 perm/sec)   p_kst 2.428571e-03   p_cons 2.900286e-01   p_joint 3.771429e-03

Joint ci ratio: 2.289802e-01	ci left: 3.232168e-03	ci right 4.079455e-03	k: 291	n:80000
Cons ci ratio: 2.164417e-02	ci left: 2.876295e-01	ci right 2.939356e-01	k: 23262	n:80000
KS ci ratio: 2.840470e-01	ci left: 2.037996e-03	ci right 2.723889e-03	k: 189	n:80000
PWP2   80000 perm   20 sec   (4046 perm/sec)   p_kst 2.362500e-03   p_cons 2.907750e-01   p_joint 3.637500e-03

Joint ci ratio: 2.409039e-01	ci left: 2.580119e-03	ci right 3.296958e-03	k: 263	n:90000
Cons ci ratio: 2.043708e-02	ci left: 2.871918e-01	ci right 2.931328e-01	k: 26114	n:90000
KS ci ratio: 2.621758e-01	ci left: 2.153166e-03	ci right 2.812888e-03	k: 222	n:90000
PWP2   90000 perm   23 sec   (3987 perm/sec)   p_kst 2.466667e-03   p_cons 2.901556e-01   p_joint 2.922222e-03

Joint ci ratio: 1.164215e-01	ci left: 1.055696e-02	ci right 1.187162e-02	k: 1120	n:100000
Cons ci ratio: 1.855899e-02	ci left: 3.056279e-01	ci right 3.113632e-01	k: 30849	n:100000
KS ci ratio: 2.432601e-01	ci left: 2.275095e-03	ci right 2.914300e-03	k: 258	n:100000
PWP2   100000 perm   25 sec   (3930 perm/sec)   p_kst 2.580000e-03   p_cons 3.084900e-01   p_joint 1.120000e-02

Joint ci ratio: 1.249823e-01	ci left: 8.309370e-03	ci right 9.425847e-03	k: 974	n:110000
Cons ci ratio: 1.767195e-02	ci left: 3.063243e-01	ci right 3.117949e-01	k: 33996	n:110000
KS ci ratio: 2.323077e-01	ci left: 2.282008e-03	ci right 2.890146e-03	k: 283	n:110000
PWP2   110000 perm   28 sec   (3875 perm/sec)   p_kst 2.572727e-03   p_cons 3.090545e-01   p_joint 8.854545e-03

Joint ci ratio: 1.238812e-01	ci left: 7.762116e-03	ci right 8.795192e-03	k: 992	n:120000
Cons ci ratio: 1.691883e-02	ci left: 3.064609e-01	ci right 3.116984e-01	k: 37089	n:120000
KS ci ratio: 2.158192e-01	ci left: 2.445842e-03	ci right 3.045257e-03	k: 328	n:120000
PWP2   120000 perm   31 sec   (3822 perm/sec)   p_kst 2.733333e-03   p_cons 3.090750e-01   p_joint 8.266667e-03

Joint ci ratio: 1.192309e-01	ci left: 7.754245e-03	ci right 8.744801e-03	k: 1071	n:130000
Cons ci ratio: 1.626910e-02	ci left: 3.061969e-01	ci right 3.112270e-01	k: 40132	n:130000
KS ci ratio: 2.066030e-01	ci left: 2.476272e-03	ci right 3.053955e-03	k: 358	n:130000
PWP2   130000 perm   34 sec   (3769 perm/sec)   p_kst 2.753846e-03   p_cons 3.087077e-01   p_joint 8.238462e-03

Joint ci ratio: 1.338872e-01	ci left: 5.678101e-03	ci right 6.499701e-03	k: 851	n:140000
Cons ci ratio: 1.601367e-02	ci left: 2.973222e-01	ci right 3.021289e-01	k: 41961	n:140000
KS ci ratio: 1.989885e-01	ci left: 2.489243e-03	ci right 3.045954e-03	k: 386	n:140000
PWP2   140000 perm   38 sec   (3717 perm/sec)   p_kst 2.757143e-03   p_cons 2.997214e-01   p_joint 6.078571e-03

Joint ci ratio: 1.560967e-01	ci left: 3.859783e-03	ci right 4.519608e-03	k: 627	n:150000
Cons ci ratio: 1.545872e-02	ci left: 2.977281e-01	ci right 3.023730e-01	k: 45007	n:150000
KS ci ratio: 1.969761e-01	ci left: 2.373969e-03	ci right 2.898884e-03	k: 394	n:150000
PWP2   150000 perm   41 sec   (3667 perm/sec)   p_kst 2.626667e-03   p_cons 3.000467e-01   p_joint 4.180000e-03

Joint ci ratio: 1.716233e-01	ci left: 2.971044e-03	ci right 3.534694e-03	k: 519	n:160000
Cons ci ratio: 1.495283e-02	ci left: 2.982228e-01	ci right 3.027219e-01	k: 48075	n:160000
KS ci ratio: 1.890049e-01	ci left: 2.427838e-03	ci right 2.940447e-03	k: 428	n:160000
PWP2   160000 perm   44 sec   (3617 perm/sec)   p_kst 2.675000e-03   p_cons 3.004688e-01   p_joint 3.243750e-03

Joint ci ratio: 1.015893e-01	ci left: 8.241062e-03	ci right 9.128757e-03	k: 1475	n:170000
Cons ci ratio: 1.421078e-02	ci left: 3.069975e-01	ci right 3.113972e-01	k: 52563	n:170000
KS ci ratio: 1.837284e-01	ci left: 2.425223e-03	ci right 2.921391e-03	k: 453	n:170000
PWP2   170000 perm   48 sec   (3570 perm/sec)   p_kst 2.664706e-03   p_cons 3.091941e-01   p_joint 8.676471e-03

Joint ci ratio: 1.074159e-01	ci left: 6.949761e-03	ci right 7.744007e-03	k: 1321	n:180000
Cons ci ratio: 1.351970e-02	ci left: 3.162037e-01	ci right 3.205133e-01	k: 57304	n:180000
KS ci ratio: 1.773912e-01	ci left: 2.465542e-03	ci right 2.950695e-03	k: 486	n:180000
PWP2   180000 perm   51 sec   (3524 perm/sec)   p_kst 2.700000e-03   p_cons 3.183556e-01   p_joint 7.338889e-03

Joint ci ratio: 1.056411e-01	ci left: 6.814490e-03	ci right 7.579608e-03	k: 1366	n:190000
Cons ci ratio: 1.316048e-02	ci left: 3.162161e-01	ci right 3.204105e-01	k: 60479	n:190000
KS ci ratio: 1.738604e-01	ci left: 2.436409e-03	ci right 2.905286e-03	k: 506	n:190000
PWP2   190000 perm   55 sec   (3480 perm/sec)   p_kst 2.663158e-03   p_cons 3.183105e-01   p_joint 7.189474e-03

Joint ci ratio: 1.029643e-01	ci left: 6.824376e-03	ci right 7.570014e-03	k: 1438	n:200000
Cons ci ratio: 1.283437e-02	ci left: 3.160290e-01	ci right 3.201162e-01	k: 63614	n:200000
KS ci ratio: 1.689328e-01	ci left: 2.458157e-03	ci right 2.916446e-03	k: 536	n:200000
PWP2   200000 perm   58 sec   (3437 perm/sec)   p_kst 2.680000e-03   p_cons 3.180700e-01   p_joint 7.190000e-03

Joint ci ratio: 1.031265e-01	ci left: 6.480790e-03	ci right 7.190068e-03	k: 1434	n:210000
Cons ci ratio: 1.253617e-02	ci left: 3.156946e-01	ci right 3.196819e-01	k: 66714	n:210000
KS ci ratio: 1.663246e-01	ci left: 2.418654e-03	ci right 2.861919e-03	k: 553	n:210000
PWP2   210000 perm   62 sec   (3397 perm/sec)   p_kst 2.633333e-03   p_cons 3.176857e-01   p_joint 6.828571e-03

Joint ci ratio: 1.077756e-01	ci left: 5.655002e-03	ci right 6.303572e-03	k: 1314	n:220000
Cons ci ratio: 1.224036e-02	ci left: 3.160088e-01	ci right 3.199051e-01	k: 69950	n:220000
KS ci ratio: 1.631190e-01	ci left: 2.404591e-03	ci right 2.835952e-03	k: 575	n:220000
PWP2   220000 perm   66 sec   (3357 perm/sec)   p_kst 2.613636e-03   p_cons 3.179545e-01   p_joint 5.972727e-03

Joint ci ratio: 1.060987e-01	ci left: 5.586846e-03	ci right 6.217008e-03	k: 1356	n:230000
Cons ci ratio: 1.197810e-02	ci left: 3.158061e-01	ci right 3.196159e-01	k: 73073	n:230000
KS ci ratio: 1.598241e-01	ci left: 2.400175e-03	ci right 2.821211e-03	k: 599	n:230000
PWP2   230000 perm   69 sec   (3318 perm/sec)   p_kst 2.604348e-03   p_cons 3.177087e-01   p_joint 5.895652e-03

Joint ci ratio: 1.128772e-01	ci left: 4.717670e-03	ci right 5.286052e-03	k: 1199	n:240000
Cons ci ratio: 1.172232e-02	ci left: 3.159789e-01	ci right 3.197088e-01	k: 76282	n:240000
KS ci ratio: 1.572272e-01	ci left: 2.380193e-03	ci right 2.790300e-03	k: 619	n:240000
PWP2   240000 perm   73 sec   (3280 perm/sec)   p_kst 2.579167e-03   p_cons 3.178417e-01   p_joint 4.995833e-03

Joint ci ratio: 1.108196e-01	ci left: 4.703926e-03	ci right 5.259646e-03	k: 1244	n:250000
Cons ci ratio: 1.147430e-02	ci left: 3.164382e-01	ci right 3.200940e-01	k: 79566	n:250000
KS ci ratio: 1.548742e-01	ci left: 2.358016e-03	ci right 2.757656e-03	k: 638	n:250000
PWP2   250000 perm   77 sec   (3241 perm/sec)   p_kst 2.552000e-03   p_cons 3.182640e-01   p_joint 4.976000e-03

Joint ci ratio: 1.100776e-01	ci left: 4.586569e-03	ci right 5.124560e-03	k: 1261	n:260000
Cons ci ratio: 1.125344e-02	ci left: 3.163982e-01	ci right 3.199827e-01	k: 82729	n:260000
KS ci ratio: 1.527401e-01	ci left: 2.333887e-03	ci right 2.723489e-03	k: 656	n:260000
PWP2   260000 perm   81 sec   (3203 perm/sec)   p_kst 2.523077e-03   p_cons 3.181885e-01   p_joint 4.850000e-03

Joint ci ratio: 1.110644e-01	ci left: 4.337437e-03	ci right 4.851064e-03	k: 1239	n:270000
Cons ci ratio: 1.104817e-02	ci left: 3.162324e-01	ci right 3.197493e-01	k: 85857	n:270000
KS ci ratio: 1.502462e-01	ci left: 2.325838e-03	ci right 2.707188e-03	k: 678	n:270000
PWP2   270000 perm   85 sec   (3167 perm/sec)   p_kst 2.511111e-03   p_cons 3.179889e-01   p_joint 4.588889e-03

Joint ci ratio: 1.125884e-01	ci left: 4.067936e-03	ci right 4.556697e-03	k: 1206	n:280000
Cons ci ratio: 1.084961e-02	ci left: 3.162431e-01	ci right 3.196964e-01	k: 89031	n:280000
KS ci ratio: 1.481889e-01	ci left: 2.308095e-03	ci right 2.680893e-03	k: 697	n:280000
PWP2   280000 perm   89 sec   (3130 perm/sec)   p_kst 2.489286e-03   p_cons 3.179679e-01   p_joint 4.307143e-03

Joint ci ratio: 1.106794e-01	ci left: 4.068446e-03	ci right 4.548440e-03	k: 1248	n:290000
Cons ci ratio: 1.066657e-02	ci left: 3.160435e-01	ci right 3.194360e-01	k: 92144	n:290000
KS ci ratio: 1.456043e-01	ci left: 2.311544e-03	ci right 2.677822e-03	k: 722	n:290000
PWP2   290000 perm   94 sec   (3094 perm/sec)   p_kst 2.489655e-03   p_cons 3.177379e-01   p_joint 4.303448e-03

Joint ci ratio: 1.109553e-01	ci left: 3.913368e-03	ci right 4.376292e-03	k: 1242	n:300000
Cons ci ratio: 1.049313e-02	ci left: 3.158310e-01	ci right 3.191658e-01	k: 95249	n:300000
KS ci ratio: 1.437294e-01	ci left: 2.295532e-03	ci right 2.654187e-03	k: 741	n:300000
PWP2   300000 perm   98 sec   (3060 perm/sec)   p_kst 2.470000e-03   p_cons 3.174967e-01   p_joint 4.140000e-03

Joint ci ratio: 1.047929e-01	ci left: 4.257994e-03	ci right 4.731988e-03	k: 1392	n:310000
Cons ci ratio: 1.032088e-02	ci left: 3.159259e-01	ci right 3.192066e-01	k: 98445	n:310000
KS ci ratio: 1.360471e-01	ci left: 2.489216e-03	ci right 2.855663e-03	k: 827	n:310000
PWP2   310000 perm   102 sec   (3027 perm/sec)   p_kst 2.667742e-03   p_cons 3.175645e-01   p_joint 4.490323e-03

Joint ci ratio: 1.035752e-01	ci left: 4.225366e-03	ci right 4.689929e-03	k: 1425	n:320000
Cons ci ratio: 1.016491e-02	ci left: 3.156719e-01	ci right 3.189002e-01	k: 101531	n:320000
KS ci ratio: 1.338817e-01	ci left: 2.492954e-03	ci right 2.853646e-03	k: 854	n:320000
PWP2   320000 perm   107 sec   (2994 perm/sec)   p_kst 2.668750e-03   p_cons 3.172844e-01   p_joint 4.453125e-03

Joint ci ratio: 1.033278e-01	ci left: 4.117976e-03	ci right 4.569584e-03	k: 1432	n:330000
Cons ci ratio: 1.001026e-02	ci left: 3.156728e-01	ci right 3.188516e-01	k: 104696	n:330000
KS ci ratio: 1.317417e-01	ci left: 2.499440e-03	ci right 2.854837e-03	k: 882	n:330000
PWP2   330000 perm   111 sec   (2961 perm/sec)   p_kst 2.672727e-03   p_cons 3.172606e-01   p_joint 4.339394e-03

Joint ci ratio: 9.314386e-02	ci left: 4.940886e-03	ci right 5.426429e-03	k: 1761	n:340000
Cons ci ratio: 9.860255e-03	ci left: 3.157709e-01	ci right 3.189028e-01	k: 107894	n:340000
KS ci ratio: 1.302036e-01	ci left: 2.485667e-03	ci right 2.834660e-03	k: 903	n:340000
PWP2   340000 perm   116 sec   (2929 perm/sec)   p_kst 2.655882e-03   p_cons 3.173353e-01   p_joint 5.179412e-03

Joint ci ratio: 9.439730e-02	ci left: 4.671341e-03	ci right 5.136914e-03	k: 1715	n:350000
Cons ci ratio: 9.720834e-03	ci left: 3.156840e-01	ci right 3.187705e-01	k: 111029	n:350000
KS ci ratio: 1.279576e-01	ci left: 2.503126e-03	ci right 2.848047e-03	k: 935	n:350000
PWP2   350000 perm   121 sec   (2896 perm/sec)   p_kst 2.671429e-03   p_cons 3.172257e-01   p_joint 4.900000e-03

Joint ci ratio: 9.462564e-02	ci left: 4.519868e-03	ci right 4.971494e-03	k: 1707	n:360000
Cons ci ratio: 9.583967e-03	ci left: 3.157464e-01	ci right 3.187898e-01	k: 114216	n:360000
KS ci ratio: 1.262825e-01	ci left: 2.500830e-03	ci right 2.840587e-03	k: 960	n:360000
PWP2   360000 perm   126 sec   (2865 perm/sec)   p_kst 2.666667e-03   p_cons 3.172667e-01   p_joint 4.741667e-03

Joint ci ratio: 9.432707e-02	ci left: 4.426727e-03	ci right 4.867573e-03	k: 1718	n:370000
Cons ci ratio: 9.455378e-03	ci left: 3.156843e-01	ci right 3.186861e-01	k: 117358	n:370000
KS ci ratio: 1.244188e-01	ci left: 2.509162e-03	ci right 2.844648e-03	k: 989	n:370000
PWP2   370000 perm   131 sec   (2835 perm/sec)   p_kst 2.672973e-03   p_cons 3.171838e-01   p_joint 4.643243e-03

Joint ci ratio: 9.319598e-02	ci left: 4.418167e-03	ci right 4.852597e-03	k: 1760	n:380000
Cons ci ratio: 9.325991e-03	ci left: 3.158965e-01	ci right 3.188589e-01	k: 120603	n:380000
KS ci ratio: 1.227561e-01	ci left: 2.511987e-03	ci right 2.843037e-03	k: 1016	n:380000
PWP2   380000 perm   135 sec   (2805 perm/sec)   p_kst 2.673684e-03   p_cons 3.173763e-01   p_joint 4.631579e-03

Joint ci ratio: 9.314843e-02	ci left: 4.309879e-03	ci right 4.733432e-03	k: 1762	n:390000
Cons ci ratio: 9.204986e-03	ci left: 3.159469e-01	ci right 3.188712e-01	k: 123789	n:390000
KS ci ratio: 1.211002e-01	ci left: 2.517183e-03	ci right 2.844122e-03	k: 1044	n:390000
PWP2   390000 perm   140 sec   (2777 perm/sec)   p_kst 2.676923e-03   p_cons 3.174077e-01   p_joint 4.517949e-03

Joint ci ratio: 9.223854e-02	ci left: 4.287601e-03	ci right 4.704627e-03	k: 1797	n:400000
Cons ci ratio: 9.086737e-03	ci left: 3.160825e-01	ci right 3.189702e-01	k: 127010	n:400000
KS ci ratio: 1.199023e-01	ci left: 2.505170e-03	ci right 2.827102e-03	k: 1065	n:400000
PWP2   400000 perm   146 sec   (2749 perm/sec)   p_kst 2.662500e-03   p_cons 3.175250e-01   p_joint 4.492500e-03

Joint ci ratio: 9.115519e-02	ci left: 4.285498e-03	ci right 4.697163e-03	k: 1840	n:410000
Cons ci ratio: 8.974849e-03	ci left: 3.161190e-01	ci right 3.189713e-01	k: 130193	n:410000
KS ci ratio: 1.190692e-01	ci left: 2.479558e-03	ci right 2.795829e-03	k: 1080	n:410000
PWP2   410000 perm   151 sec   (2721 perm/sec)   p_kst 2.634146e-03   p_cons 3.175439e-01   p_joint 4.487805e-03

Joint ci ratio: 9.289933e-02	ci left: 4.025258e-03	ci right 4.419725e-03	k: 1772	n:420000
Cons ci ratio: 8.868699e-03	ci left: 3.160709e-01	ci right 3.188888e-01	k: 133341	n:420000
KS ci ratio: 1.172914e-01	ci left: 2.496771e-03	ci right 2.810153e-03	k: 1113	n:420000
PWP2   420000 perm   156 sec   (2693 perm/sec)   p_kst 2.650000e-03   p_cons 3.174786e-01   p_joint 4.219048e-03

Joint ci ratio: 9.174208e-02	ci left: 4.033884e-03	ci right 4.424006e-03	k: 1817	n:430000
Cons ci ratio: 8.766700e-03	ci left: 3.160019e-01	ci right 3.187866e-01	k: 136479	n:430000
KS ci ratio: 1.161507e-01	ci left: 2.488375e-03	ci right 2.797457e-03	k: 1135	n:430000
PWP2   430000 perm   161 sec   (2667 perm/sec)   p_kst 2.639535e-03   p_cons 3.173930e-01   p_joint 4.225581e-03

Joint ci ratio: 9.067593e-02	ci left: 4.037703e-03	ci right 4.423416e-03	k: 1860	n:440000
Cons ci ratio: 8.664959e-03	ci left: 3.160951e-01	ci right 3.188482e-01	k: 139687	n:440000
KS ci ratio: 1.151924e-01	ci left: 2.473752e-03	ci right 2.778311e-03	k: 1154	n:440000
PWP2   440000 perm   167 sec   (2641 perm/sec)   p_kst 2.622727e-03   p_cons 3.174705e-01   p_joint 4.227273e-03

Joint ci ratio: 8.995502e-02	ci left: 4.013135e-03	ci right 4.393293e-03	k: 1890	n:450000
Cons ci ratio: 8.569139e-03	ci left: 3.160601e-01	ci right 3.187823e-01	k: 142839	n:450000
KS ci ratio: 1.138208e-01	ci left: 2.479221e-03	ci right 2.780574e-03	k: 1182	n:450000
PWP2   450000 perm   172 sec   (2615 perm/sec)   p_kst 2.626667e-03   p_cons 3.174200e-01   p_joint 4.200000e-03

Joint ci ratio: 8.897239e-02	ci left: 4.015154e-03	ci right 4.391133e-03	k: 1932	n:460000
Cons ci ratio: 8.475791e-03	ci left: 3.160593e-01	ci right 3.187517e-01	k: 146006	n:460000
KS ci ratio: 1.125903e-01	ci left: 2.480246e-03	ci right 2.778248e-03	k: 1208	n:460000
PWP2   460000 perm   178 sec   (2590 perm/sec)   p_kst 2.626087e-03   p_cons 3.174043e-01   p_joint 4.200000e-03

Joint ci ratio: 8.838151e-02	ci left: 3.983815e-03	ci right 4.354253e-03	k: 1958	n:470000
Cons ci ratio: 8.386541e-03	ci left: 3.160013e-01	ci right 3.186647e-01	k: 149146	n:470000
KS ci ratio: 1.112184e-01	ci left: 2.489518e-03	ci right 2.784751e-03	k: 1238	n:470000
PWP2   470000 perm   183 sec   (2565 perm/sec)   p_kst 2.634043e-03   p_cons 3.173319e-01   p_joint 4.165957e-03

Joint ci ratio: 8.733951e-02	ci left: 3.996585e-03	ci right 4.363606e-03	k: 2005	n:480000
Cons ci ratio: 8.297538e-03	ci left: 3.160770e-01	ci right 3.187127e-01	k: 152349	n:480000
KS ci ratio: 1.098955e-01	ci left: 2.498426e-03	ci right 2.790962e-03	k: 1268	n:480000
PWP2   480000 perm   189 sec   (2540 perm/sec)   p_kst 2.641667e-03   p_cons 3.173937e-01   p_joint 4.177083e-03

Joint ci ratio: 7.935652e-02	ci left: 4.758406e-03	ci right 5.153604e-03	k: 2427	n:490000
Cons ci ratio: 8.211233e-03	ci left: 3.161539e-01	ci right 3.187626e-01	k: 155554	n:490000
KS ci ratio: 1.084932e-01	ci left: 2.512946e-03	ci right 2.803188e-03	k: 1301	n:490000
PWP2   490000 perm   195 sec   (2516 perm/sec)   p_kst 2.655102e-03   p_cons 3.174571e-01   p_joint 4.953061e-03

Joint ci ratio: 8.388990e-02	ci left: 4.165545e-03	ci right 4.532235e-03	k: 2173	n:500000
Cons ci ratio: 8.128615e-03	ci left: 3.161718e-01	ci right 3.187543e-01	k: 158731	n:500000
KS ci ratio: 1.072641e-01	ci left: 2.521069e-03	ci right 2.808742e-03	k: 1331	n:500000
PWP2   500000 perm   201 sec   (2493 perm/sec)   p_kst 2.662000e-03   p_cons 3.174620e-01   p_joint 4.346000e-03

Joint ci ratio: 8.326122e-02	ci left: 4.147220e-03	ci right 4.509427e-03	k: 2206	n:510000
Cons ci ratio: 8.050446e-03	ci left: 3.160815e-01	ci right 3.186383e-01	k: 161853	n:510000
KS ci ratio: 1.065079e-01	ci left: 2.507894e-03	ci right 2.791920e-03	k: 1350	n:510000
PWP2   510000 perm   206 sec   (2471 perm/sec)   p_kst 2.647059e-03   p_cons 3.173588e-01   p_joint 4.325490e-03

Joint ci ratio: 8.277645e-02	ci left: 4.116425e-03	ci right 4.473748e-03	k: 2232	n:520000
Cons ci ratio: 7.969677e-03	ci left: 3.162560e-01	ci right 3.187884e-01	k: 165111	n:520000
KS ci ratio: 1.055361e-01	ci left: 2.506467e-03	ci right 2.787581e-03	k: 1375	n:520000
PWP2   520000 perm   212 sec   (2449 perm/sec)   p_kst 2.644231e-03   p_cons 3.175212e-01   p_joint 4.292308e-03

Joint ci ratio: 8.257582e-02	ci left: 4.059077e-03	ci right 4.410527e-03	k: 2243	n:530000
Cons ci ratio: 7.895585e-03	ci left: 3.161884e-01	ci right 3.186966e-01	k: 168244	n:530000
KS ci ratio: 1.045530e-01	ci left: 2.506943e-03	ci right 2.785330e-03	k: 1401	n:530000
PWP2   530000 perm   218 sec   (2427 perm/sec)   p_kst 2.643396e-03   p_cons 3.174415e-01   p_joint 4.232075e-03

Joint ci ratio: 8.181376e-02	ci left: 4.060088e-03	ci right 4.408227e-03	k: 2285	n:540000
Cons ci ratio: 7.823521e-03	ci left: 3.161234e-01	ci right 3.186082e-01	k: 171377	n:540000
KS ci ratio: 1.036697e-01	ci left: 2.503805e-03	ci right 2.779352e-03	k: 1425	n:540000
PWP2   540000 perm   224 sec   (2406 perm/sec)   p_kst 2.638889e-03   p_cons 3.173648e-01   p_joint 4.231481e-03

Joint ci ratio: 8.056999e-02	ci left: 4.112743e-03	ci right 4.459784e-03	k: 2356	n:550000
Cons ci ratio: 7.924895e-03	ci left: 3.066692e-01	ci right 3.091110e-01	k: 169339	n:550000
KS ci ratio: 1.027373e-01	ci left: 2.504334e-03	ci right 2.777310e-03	k: 1451	n:550000
PWP2   550000 perm   231 sec   (2385 perm/sec)   p_kst 2.638182e-03   p_cons 3.078891e-01   p_joint 4.283636e-03

Joint ci ratio: 8.100564e-02	ci left: 3.995550e-03	ci right 4.334611e-03	k: 2331	n:560000
Cons ci ratio: 7.853947e-03	ci left: 3.066732e-01	ci right 3.090931e-01	k: 172414	n:560000
KS ci ratio: 1.015888e-01	ci left: 2.517038e-03	ci right 2.788148e-03	k: 1484	n:560000
PWP2   560000 perm   237 sec   (2364 perm/sec)   p_kst 2.650000e-03   p_cons 3.078821e-01   p_joint 4.162500e-03

Joint ci ratio: 8.025192e-02	ci left: 4.001090e-03	ci right 4.337314e-03	k: 2375	n:570000
Cons ci ratio: 7.785480e-03	ci left: 3.066439e-01	ci right 3.090423e-01	k: 175470	n:570000
KS ci ratio: 1.006776e-01	ci left: 2.519049e-03	ci right 2.787800e-03	k: 1511	n:570000
PWP2   570000 perm   243 sec   (2344 perm/sec)   p_kst 2.650877e-03   p_cons 3.078421e-01   p_joint 4.166667e-03

Joint ci ratio: 8.222392e-02	ci left: 3.742904e-03	ci right 4.065531e-03	k: 2263	n:580000
Cons ci ratio: 7.716805e-03	ci left: 3.067241e-01	ci right 3.091019e-01	k: 178589	n:580000
KS ci ratio: 9.995348e-02	ci left: 2.512597e-03	ci right 2.778617e-03	k: 1533	n:580000
PWP2   580000 perm   250 sec   (2324 perm/sec)   p_kst 2.643103e-03   p_cons 3.079121e-01   p_joint 3.901724e-03

Outputting figure to mutsig2_images.part000000000141/PWP2.5_2844_580000_0.0026431_0.30791_0.0039017.png
                gene_name: PWP2
               theta_stop: 0.100 
                    nperm: 580000 
                     p_ks: 0.0026 
        ci_ks_bounds_left: 0.0025 
       ci_ks_bounds_right: 0.0028 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.0039 
     ci_joint_bounds_left: 0.0037 
    ci_joint_bounds_right: 0.0041 

Current progress: 57 percent done.
PYGO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.325328e-02	ci left: 7.309807e-01	ci right 7.482795e-01	k: 7397	n:10000
Cons ci ratio: 6.633841e-02	ci left: 2.501382e-01	ci right 2.674026e-01	k: 2587	n:10000
KS ci ratio: 1.585788e-02	ci left: 8.524324e-01	ci right 8.661576e-01	k: 8594	n:10000
PYGO1   10000 perm   2 sec   (5935 perm/sec)   p_kst 8.594000e-01   p_cons 2.587000e-01   p_joint 7.397000e-01

Outputting figure to mutsig2_images.part000000000141/PYGO1.5_1272_10000_0.8594_0.2587_0.7397.png
                gene_name: PYGO1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 59 percent done.
PTPN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.255649e-02	ci left: 9.011385e-01	ci right 9.126232e-01	k: 9070	n:10000
KS ci ratio: 1.844185e-02	ci left: 8.111081e-01	ci right 8.263058e-01	k: 8188	n:10000
PTPN6   10000 perm   2 sec   (6257 perm/sec)   p_kst 8.188000e-01   p_cons 9.070000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/PTPN6.4_2009_10000_0.8188_0.907_1.png
                gene_name: PTPN6
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
PTPRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.257984e-01	ci left: 8.290659e-02	ci right 9.413446e-02	k: 884	n:10000
Cons ci ratio: 7.719376e-02	ci left: 1.970258e-01	ci right 2.129464e-01	k: 2049	n:10000
KS ci ratio: 1.293583e-01	ci left: 7.863503e-02	ci right 8.960867e-02	k: 840	n:10000
PTPRB   10000 perm   2 sec   (4265 perm/sec)   p_kst 8.400000e-02   p_cons 2.049000e-01   p_joint 8.840000e-02

Joint ci ratio: 9.613521e-02	ci left: 7.304863e-02	ci right 8.047497e-02	k: 1534	n:20000
Cons ci ratio: 5.429354e-02	ci left: 2.011059e-01	ci right 2.123795e-01	k: 4134	n:20000
KS ci ratio: 9.177018e-02	ci left: 7.975078e-02	ci right 8.747079e-02	k: 1671	n:20000
PTPRB   20000 perm   5 sec   (3876 perm/sec)   p_kst 8.355000e-02   p_cons 2.067000e-01   p_joint 7.670000e-02

Outputting figure to mutsig2_images.part000000000141/PTPRB.4_6842_20000_0.08355_0.2067_0.0767.png
                gene_name: PTPRB
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.080 

Current progress: 62 percent done.
PTPRJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.179607e-02	ci left: 4.580809e-01	ci right 4.777378e-01	k: 4679	n:10000
Cons ci ratio: 7.237715e-02	ci left: 2.185242e-01	ci right 2.350353e-01	k: 2267	n:10000
KS ci ratio: 2.810189e-02	ci left: 6.511231e-01	ci right 6.697834e-01	k: 6605	n:10000
PTPRJ   10000 perm   2 sec   (4968 perm/sec)   p_kst 6.605000e-01   p_cons 2.267000e-01   p_joint 4.679000e-01

Outputting figure to mutsig2_images.part000000000141/PTPRJ.4_4123_10000_0.6605_0.2267_0.4679.png
                gene_name: PTPRJ
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 64 percent done.
PVRL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.121871e-01	ci left: 1.026640e-01	ci right 1.149650e-01	k: 1087	n:10000
Cons ci ratio: 3.343604e-02	ci left: 5.690509e-01	ci right 5.885032e-01	k: 5788	n:10000
KS ci ratio: 2.371212e-01	ci left: 2.344048e-02	ci right 2.983930e-02	k: 265	n:10000
PVRL2   10000 perm   2 sec   (5630 perm/sec)   p_kst 2.650000e-02   p_cons 5.788000e-01   p_joint 1.087000e-01

Joint ci ratio: 8.781642e-02	ci left: 8.660762e-02	ci right 9.461186e-02	k: 1811	n:20000
Cons ci ratio: 2.322972e-02	ci left: 5.805399e-01	ci right 5.942347e-01	k: 11748	n:20000
KS ci ratio: 1.636116e-01	ci left: 2.561344e-02	ci right 3.022518e-02	k: 557	n:20000
PVRL2   20000 perm   4 sec   (5067 perm/sec)   p_kst 2.785000e-02   p_cons 5.874000e-01   p_joint 9.055000e-02

Joint ci ratio: 6.947606e-02	ci left: 9.259058e-02	ci right 9.928791e-02	k: 2877	n:30000
Cons ci ratio: 1.963505e-02	ci left: 5.649087e-01	ci right 5.761443e-01	k: 17116	n:30000
KS ci ratio: 1.326147e-01	ci left: 2.642037e-02	ci right 3.020505e-02	k: 848	n:30000
PVRL2   30000 perm   6 sec   (4843 perm/sec)   p_kst 2.826667e-02   p_cons 5.705333e-01   p_joint 9.590000e-02

Joint ci ratio: 6.644358e-02	ci left: 7.738405e-02	ci right 8.272710e-02	k: 3201	n:40000
Cons ci ratio: 1.647809e-02	ci left: 5.810293e-01	ci right 5.907082e-01	k: 23435	n:40000
KS ci ratio: 1.147959e-01	ci left: 2.669672e-02	ci right 2.997223e-02	k: 1132	n:40000
PVRL2   40000 perm   9 sec   (4693 perm/sec)   p_kst 2.830000e-02   p_cons 5.858750e-01   p_joint 8.002500e-02

Joint ci ratio: 6.925322e-02	ci left: 5.813071e-02	ci right 6.232053e-02	k: 3010	n:50000
Cons ci ratio: 1.475175e-02	ci left: 5.811070e-01	ci right 5.897631e-01	k: 29272	n:50000
KS ci ratio: 1.020574e-01	ci left: 2.719544e-02	ci right 3.013962e-02	k: 1432	n:50000
PVRL2   50000 perm   11 sec   (4491 perm/sec)   p_kst 2.864000e-02   p_cons 5.854400e-01   p_joint 6.020000e-02

Joint ci ratio: 6.126875e-02	ci left: 6.190654e-02	ci right 6.583577e-02	k: 3831	n:60000
Cons ci ratio: 1.346113e-02	ci left: 5.816793e-01	ci right 5.895791e-01	k: 35138	n:60000
KS ci ratio: 9.284901e-02	ci left: 2.750887e-02	ci right 3.020363e-02	k: 1730	n:60000
PVRL2   60000 perm   14 sec   (4417 perm/sec)   p_kst 2.883333e-02   p_cons 5.856333e-01   p_joint 6.385000e-02

Outputting figure to mutsig2_images.part000000000141/PVRL2.4_2055_60000_0.028833_0.58563_0.06385.png
                gene_name: PVRL2
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.066 

Current progress: 66 percent done.
PVRL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.398467e-02	ci left: 2.640875e-01	ci right 2.816450e-01	k: 2728	n:10000
Cons ci ratio: 1.328380e-01	ci left: 7.475563e-02	ci right 8.549047e-02	k: 800	n:10000
KS ci ratio: 9.944982e-03	ci left: 9.347514e-01	ci right 9.441906e-01	k: 9396	n:10000
PVRL4   10000 perm   2 sec   (5830 perm/sec)   p_kst 9.396000e-01   p_cons 8.000000e-02   p_joint 2.728000e-01

Joint ci ratio: 3.880499e-02	ci left: 3.312442e-01	ci right 3.444030e-01	k: 6756	n:20000
Cons ci ratio: 8.838073e-02	ci left: 8.557862e-02	ci right 9.354118e-02	k: 1790	n:20000
KS ci ratio: 7.063948e-03	ci left: 9.356451e-01	ci right 9.423266e-01	k: 18781	n:20000
PVRL4   20000 perm   4 sec   (5218 perm/sec)   p_kst 9.390500e-01   p_cons 8.950000e-02   p_joint 3.378000e-01

Outputting figure to mutsig2_images.part000000000141/PVRL4.4_1569_20000_0.93905_0.0895_0.3378.png
                gene_name: PVRL4
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 67 percent done.
PYGB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.120740e-02	ci left: 9.191472e-01	ci right 9.296040e-01	k: 9245	n:10000
KS ci ratio: 2.401460e-02	ci left: 7.182540e-01	ci right 7.358135e-01	k: 7271	n:10000
PYGB   10000 perm   2 sec   (5456 perm/sec)   p_kst 7.271000e-01   p_cons 9.245000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/PYGB.4_2612_10000_0.7271_0.9245_1.png
                gene_name: PYGB
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
PYGM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.996961e-01	ci left: 3.338573e-02	ci right 4.088702e-02	k: 370	n:10000
Cons ci ratio: 1.935483e-01	ci left: 3.557635e-02	ci right 4.329490e-02	k: 393	n:10000
KS ci ratio: 1.002557e-01	ci left: 1.259128e-01	ci right 1.393020e-01	k: 1325	n:10000
PYGM   10000 perm   2 sec   (5391 perm/sec)   p_kst 1.325000e-01   p_cons 3.930000e-02   p_joint 3.700000e-02

Joint ci ratio: 8.868017e-02	ci left: 8.503968e-02	ci right 9.298028e-02	k: 1779	n:20000
Cons ci ratio: 1.343958e-01	ci left: 3.805187e-02	ci right 4.358264e-02	k: 815	n:20000
KS ci ratio: 7.244374e-02	ci left: 1.230546e-01	ci right 1.323539e-01	k: 2553	n:20000
PYGM   20000 perm   4 sec   (4869 perm/sec)   p_kst 1.276500e-01   p_cons 4.075000e-02   p_joint 8.895000e-02

Joint ci ratio: 7.427005e-02	ci left: 8.180230e-02	ci right 8.814501e-02	k: 2548	n:30000
Cons ci ratio: 1.031833e-01	ci left: 4.352684e-02	ci right 4.829493e-02	k: 1376	n:30000
KS ci ratio: 5.925686e-02	ci left: 1.235150e-01	ci right 1.310907e-01	k: 3818	n:30000
PYGM   30000 perm   6 sec   (4661 perm/sec)   p_kst 1.272667e-01   p_cons 4.586667e-02   p_joint 8.493333e-02

Joint ci ratio: 5.947076e-02	ci left: 9.505379e-02	ci right 1.009047e-01	k: 3918	n:40000
Cons ci ratio: 8.928329e-02	ci left: 4.391867e-02	ci right 4.804756e-02	k: 1838	n:40000
KS ci ratio: 5.182665e-02	ci left: 1.218727e-01	ci right 1.283818e-01	k: 5004	n:40000
PYGM   40000 perm   9 sec   (4538 perm/sec)   p_kst 1.251000e-01   p_cons 4.595000e-02   p_joint 9.795000e-02

Outputting figure to mutsig2_images.part000000000141/PYGM.4_2609_40000_0.1251_0.04595_0.09795.png
                gene_name: PYGM
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.046 
      ci_cons_bounds_left: 0.044 
     ci_cons_bounds_right: 0.048 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 71 percent done.
ProSAPiP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.911757e-01	ci left: 1.520682e-02	ci right 2.047941e-02	k: 177	n:10000
Cons ci ratio: 9.584355e-02	ci left: 1.363893e-01	ci right 1.502192e-01	k: 1432	n:10000
KS ci ratio: 5.045244e-01	ci left: 4.494298e-03	ci right 7.604055e-03	k: 59	n:10000
ProSAPiP1   10000 perm   2 sec   (5624 perm/sec)   p_kst 5.900000e-03   p_cons 1.432000e-01   p_joint 1.770000e-02

Joint ci ratio: 3.552752e-01	ci left: 4.977027e-03	ci right 7.170311e-03	k: 120	n:20000
Cons ci ratio: 6.810596e-02	ci left: 1.372391e-01	ci right 1.469652e-01	k: 2841	n:20000
KS ci ratio: 3.761731e-01	ci left: 4.386465e-03	ci right 6.461320e-03	k: 107	n:20000
ProSAPiP1   20000 perm   4 sec   (5060 perm/sec)   p_kst 5.350000e-03   p_cons 1.420500e-01   p_joint 6.000000e-03

Joint ci ratio: 3.110310e-01	ci left: 4.448416e-03	ci right 6.116268e-03	k: 157	n:30000
Cons ci ratio: 5.588393e-02	ci left: 1.369483e-01	ci right 1.448547e-01	k: 4226	n:30000
KS ci ratio: 3.024883e-01	ci left: 4.725427e-03	ci right 6.439129e-03	k: 166	n:30000
ProSAPiP1   30000 perm   6 sec   (4690 perm/sec)   p_kst 5.533333e-03   p_cons 1.408667e-01   p_joint 5.233333e-03

Joint ci ratio: 1.815153e-01	ci left: 1.047823e-02	ci right 1.259358e-02	k: 460	n:40000
Cons ci ratio: 4.859291e-02	ci left: 1.365143e-01	ci right 1.433380e-01	k: 5596	n:40000
KS ci ratio: 2.724118e-01	ci left: 4.448864e-03	ci right 5.874430e-03	k: 205	n:40000
ProSAPiP1   40000 perm   9 sec   (4581 perm/sec)   p_kst 5.125000e-03   p_cons 1.399000e-01   p_joint 1.150000e-02

Joint ci ratio: 1.942359e-01	ci left: 7.294924e-03	ci right 8.882985e-03	k: 403	n:50000
Cons ci ratio: 4.367086e-02	ci left: 1.357409e-01	ci right 1.418211e-01	k: 6938	n:50000
KS ci ratio: 2.458216e-01	ci left: 4.438180e-03	ci right 5.700334e-03	k: 252	n:50000
ProSAPiP1   50000 perm   11 sec   (4495 perm/sec)   p_kst 5.040000e-03   p_cons 1.387600e-01   p_joint 8.060000e-03

Joint ci ratio: 1.836840e-01	ci left: 6.841129e-03	ci right 8.240472e-03	k: 451	n:60000
Cons ci ratio: 3.988203e-02	ci left: 1.359105e-01	ci right 1.414578e-01	k: 8320	n:60000
KS ci ratio: 2.250004e-01	ci left: 4.467073e-03	ci right 5.614940e-03	k: 301	n:60000
ProSAPiP1   60000 perm   14 sec   (4415 perm/sec)   p_kst 5.016667e-03   p_cons 1.386667e-01   p_joint 7.516667e-03

Joint ci ratio: 1.819691e-01	ci left: 5.986266e-03	ci right 7.198036e-03	k: 460	n:70000
Cons ci ratio: 3.691221e-02	ci left: 1.361900e-01	ci right 1.413257e-01	k: 9712	n:70000
KS ci ratio: 2.081123e-01	ci left: 4.518038e-03	ci right 5.580770e-03	k: 352	n:70000
ProSAPiP1   70000 perm   16 sec   (4337 perm/sec)   p_kst 5.028571e-03   p_cons 1.387429e-01   p_joint 6.571429e-03

Joint ci ratio: 1.274456e-01	ci left: 1.094214e-02	ci right 1.244358e-02	k: 934	n:80000
Cons ci ratio: 3.447699e-02	ci left: 1.367089e-01	ci right 1.415173e-01	k: 11128	n:80000
KS ci ratio: 1.940508e-01	ci left: 4.582475e-03	ci right 5.578936e-03	k: 405	n:80000
ProSAPiP1   80000 perm   19 sec   (4266 perm/sec)   p_kst 5.062500e-03   p_cons 1.391000e-01   p_joint 1.167500e-02

Joint ci ratio: 1.508772e-01	ci left: 6.882524e-03	ci right 8.016237e-03	k: 669	n:90000
Cons ci ratio: 3.254620e-02	ci left: 1.365473e-01	ci right 1.410760e-01	k: 12492	n:90000
KS ci ratio: 1.831042e-01	ci left: 4.602660e-03	ci right 5.540787e-03	k: 455	n:90000
ProSAPiP1   90000 perm   21 sec   (4195 perm/sec)   p_kst 5.055556e-03   p_cons 1.388000e-01   p_joint 7.433333e-03

Joint ci ratio: 1.490420e-01	ci left: 6.357763e-03	ci right 7.391151e-03	k: 686	n:100000
Cons ci ratio: 3.088394e-02	ci left: 1.366030e-01	ci right 1.408980e-01	k: 13874	n:100000
KS ci ratio: 1.733073e-01	ci left: 4.648776e-03	ci right 5.540302e-03	k: 508	n:100000
ProSAPiP1   100000 perm   24 sec   (4125 perm/sec)   p_kst 5.080000e-03   p_cons 1.387400e-01   p_joint 6.860000e-03

Joint ci ratio: 1.458142e-01	ci left: 6.051136e-03	ci right 7.011524e-03	k: 717	n:110000
Cons ci ratio: 3.040485e-02	ci left: 1.292733e-01	ci right 1.332735e-01	k: 14439	n:110000
KS ci ratio: 1.649315e-01	ci left: 4.687600e-03	ci right 5.538814e-03	k: 561	n:110000
ProSAPiP1   110000 perm   27 sec   (4019 perm/sec)   p_kst 5.100000e-03   p_cons 1.312636e-01   p_joint 6.518182e-03

Joint ci ratio: 1.483696e-01	ci left: 5.354090e-03	ci right 6.220056e-03	k: 693	n:120000
Cons ci ratio: 2.913356e-02	ci left: 1.291786e-01	ci right 1.330059e-01	k: 15730	n:120000
KS ci ratio: 1.585731e-01	ci left: 4.664782e-03	ci right 5.476086e-03	k: 607	n:120000
ProSAPiP1   120000 perm   30 sec   (3964 perm/sec)   p_kst 5.058333e-03   p_cons 1.310833e-01   p_joint 5.775000e-03

Joint ci ratio: 1.455825e-01	ci left: 5.142250e-03	ci right 5.956967e-03	k: 720	n:130000
Cons ci ratio: 2.796318e-02	ci left: 1.294762e-01	ci right 1.331557e-01	k: 17070	n:130000
KS ci ratio: 1.530151e-01	ci left: 4.638609e-03	ci right 5.414492e-03	k: 652	n:130000
ProSAPiP1   130000 perm   33 sec   (3911 perm/sec)   p_kst 5.015385e-03   p_cons 1.313077e-01   p_joint 5.538462e-03

Joint ci ratio: 1.437202e-01	ci left: 4.905705e-03	ci right 5.672147e-03	k: 739	n:140000
Cons ci ratio: 2.694106e-02	ci left: 1.295847e-01	ci right 1.331306e-01	k: 18389	n:140000
KS ci ratio: 1.465337e-01	ci left: 4.712933e-03	ci right 5.464933e-03	k: 711	n:140000
ProSAPiP1   140000 perm   36 sec   (3859 perm/sec)   p_kst 5.078571e-03   p_cons 1.313500e-01   p_joint 5.278571e-03

Joint ci ratio: 1.213078e-01	ci left: 6.493773e-03	ci right 7.338789e-03	k: 1036	n:150000
Cons ci ratio: 2.600443e-02	ci left: 1.298466e-01	ci right 1.332743e-01	k: 19733	n:150000
KS ci ratio: 1.407199e-01	ci left: 4.784379e-03	ci right 5.514950e-03	k: 771	n:150000
ProSAPiP1   150000 perm   39 sec   (3809 perm/sec)   p_kst 5.140000e-03   p_cons 1.315533e-01   p_joint 6.906667e-03

Joint ci ratio: 1.222272e-01	ci left: 5.996924e-03	ci right 6.783624e-03	k: 1021	n:160000
Cons ci ratio: 2.515915e-02	ci left: 1.300777e-01	ci right 1.333982e-01	k: 21077	n:160000
KS ci ratio: 1.361242e-01	ci left: 4.805138e-03	ci right 5.512975e-03	k: 824	n:160000
ProSAPiP1   160000 perm   43 sec   (3759 perm/sec)   p_kst 5.150000e-03   p_cons 1.317312e-01   p_joint 6.381250e-03

Joint ci ratio: 1.199686e-01	ci left: 5.866602e-03	ci right 6.620974e-03	k: 1060	n:170000
Cons ci ratio: 2.439315e-02	ci left: 1.302655e-01	ci right 1.334882e-01	k: 22418	n:170000
KS ci ratio: 1.321783e-01	ci left: 4.806731e-03	ci right 5.492665e-03	k: 874	n:170000
ProSAPiP1   170000 perm   46 sec   (3712 perm/sec)   p_kst 5.141176e-03   p_cons 1.318706e-01   p_joint 6.235294e-03

Joint ci ratio: 1.200465e-01	ci left: 5.535234e-03	ci right 6.247488e-03	k: 1059	n:180000
Cons ci ratio: 2.369827e-02	ci left: 1.303842e-01	ci right 1.335166e-01	k: 23750	n:180000
KS ci ratio: 1.296175e-01	ci left: 4.727755e-03	ci right 5.388341e-03	k: 909	n:180000
ProSAPiP1   180000 perm   49 sec   (3665 perm/sec)   p_kst 5.050000e-03   p_cons 1.319444e-01   p_joint 5.883333e-03

Joint ci ratio: 1.207545e-01	ci left: 5.182593e-03	ci right 5.853683e-03	k: 1047	n:190000
Cons ci ratio: 2.306223e-02	ci left: 1.304653e-01	ci right 1.335144e-01	k: 25077	n:190000
KS ci ratio: 1.261311e-01	ci left: 4.738762e-03	ci right 5.381745e-03	k: 960	n:190000
ProSAPiP1   190000 perm   53 sec   (3618 perm/sec)   p_kst 5.052632e-03   p_cons 1.319842e-01   p_joint 5.510526e-03

Joint ci ratio: 1.171725e-01	ci left: 5.238801e-03	ci right 5.895654e-03	k: 1112	n:200000
Cons ci ratio: 2.248707e-02	ci left: 1.304149e-01	ci right 1.333858e-01	k: 26379	n:200000
KS ci ratio: 1.228507e-01	ci left: 4.753730e-03	ci right 5.380747e-03	k: 1012	n:200000
ProSAPiP1   200000 perm   56 sec   (3572 perm/sec)   p_kst 5.060000e-03   p_cons 1.318950e-01   p_joint 5.560000e-03

Joint ci ratio: 1.151766e-01	ci left: 5.169641e-03	ci right 5.806030e-03	k: 1151	n:210000
Cons ci ratio: 2.194331e-02	ci left: 1.304697e-01	ci right 1.333691e-01	k: 27702	n:210000
KS ci ratio: 1.196444e-01	ci left: 4.781327e-03	ci right 5.394361e-03	k: 1067	n:210000
ProSAPiP1   210000 perm   60 sec   (3526 perm/sec)   p_kst 5.080952e-03   p_cons 1.319143e-01   p_joint 5.480952e-03

Joint ci ratio: 1.062026e-01	ci left: 5.827558e-03	ci right 6.485555e-03	k: 1353	n:220000
Cons ci ratio: 2.143292e-02	ci left: 1.305655e-01	ci right 1.333987e-01	k: 29035	n:220000
KS ci ratio: 1.163128e-01	ci left: 4.837505e-03	ci right 5.439284e-03	k: 1129	n:220000
ProSAPiP1   220000 perm   63 sec   (3481 perm/sec)   p_kst 5.131818e-03   p_cons 1.319773e-01   p_joint 6.150000e-03

Joint ci ratio: 9.337544e-02	ci left: 7.249119e-03	ci right 7.963374e-03	k: 1748	n:230000
Cons ci ratio: 2.094386e-02	ci left: 1.307923e-01	ci right 1.335648e-01	k: 30400	n:230000
KS ci ratio: 1.140654e-01	ci left: 4.817190e-03	ci right 5.404084e-03	k: 1174	n:230000
ProSAPiP1   230000 perm   67 sec   (3438 perm/sec)   p_kst 5.104348e-03   p_cons 1.321739e-01   p_joint 7.600000e-03

Joint ci ratio: 9.420768e-02	ci left: 6.824934e-03	ci right 7.503716e-03	k: 1718	n:240000
Cons ci ratio: 2.051884e-02	ci left: 1.306440e-01	ci right 1.333566e-01	k: 31679	n:240000
KS ci ratio: 1.119896e-01	ci left: 4.794621e-03	ci right 5.367432e-03	k: 1218	n:240000
ProSAPiP1   240000 perm   71 sec   (3395 perm/sec)   p_kst 5.075000e-03   p_cons 1.319958e-01   p_joint 7.158333e-03

Joint ci ratio: 1.198060e-01	ci left: 4.008459e-03	ci right 4.523139e-03	k: 1065	n:250000
Cons ci ratio: 2.010182e-02	ci left: 1.306993e-01	ci right 1.333572e-01	k: 33006	n:250000
KS ci ratio: 1.044349e-01	ci left: 5.311226e-03	ci right 5.900325e-03	k: 1400	n:250000
ProSAPiP1   250000 perm   75 sec   (3352 perm/sec)   p_kst 5.600000e-03   p_cons 1.320240e-01   p_joint 4.260000e-03

Joint ci ratio: 9.202326e-02	ci left: 6.611703e-03	ci right 7.253208e-03	k: 1801	n:260000
Cons ci ratio: 1.909449e-02	ci left: 1.381550e-01	ci right 1.408222e-01	k: 36266	n:260000
KS ci ratio: 1.021969e-01	ci left: 5.339251e-03	ci right 5.918007e-03	k: 1462	n:260000
ProSAPiP1   260000 perm   79 sec   (3311 perm/sec)   p_kst 5.623077e-03   p_cons 1.394846e-01   p_joint 6.926923e-03

Joint ci ratio: 8.865553e-02	ci left: 6.870052e-03	ci right 7.510966e-03	k: 1940	n:270000
Cons ci ratio: 1.997249e-02	ci left: 1.236109e-01	ci right 1.261083e-01	k: 33711	n:270000
KS ci ratio: 1.005956e-01	ci left: 5.311157e-03	ci right 5.877313e-03	k: 1509	n:270000
ProSAPiP1   270000 perm   83 sec   (3271 perm/sec)   p_kst 5.588889e-03   p_cons 1.248556e-01   p_joint 7.185185e-03

Joint ci ratio: 8.080109e-02	ci left: 7.998763e-03	ci right 8.675758e-03	k: 2333	n:280000
Cons ci ratio: 1.963333e-02	ci left: 1.234037e-01	ci right 1.258541e-01	k: 34895	n:280000
KS ci ratio: 9.865395e-02	ci left: 5.330422e-03	ci right 5.887029e-03	k: 1569	n:280000
ProSAPiP1   280000 perm   87 sec   (3234 perm/sec)   p_kst 5.603571e-03   p_cons 1.246250e-01   p_joint 8.332143e-03

Outputting figure to mutsig2_images.part000000000141/ProSAPiP1.4_2034_280000_0.0056036_0.12462_0.0083321.png
                gene_name: ProSAPiP1
               theta_stop: 0.099 
                    nperm: 280000 
                     p_ks: 0.0056 
        ci_ks_bounds_left: 0.0053 
       ci_ks_bounds_right: 0.0059 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.0083 
     ci_joint_bounds_left: 0.0080 
    ci_joint_bounds_right: 0.0087 

Current progress: 72 percent done.
PTPN9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.483523e-02	ci left: 2.071791e-01	ci right 2.233870e-01	k: 2152	n:10000
Cons ci ratio: 3.378007e-02	ci left: 5.640372e-01	ci right 5.835198e-01	k: 5738	n:10000
KS ci ratio: 1.855993e-01	ci left: 3.872553e-02	ci right 4.674361e-02	k: 426	n:10000
PTPN9   10000 perm   2 sec   (6463 perm/sec)   p_kst 4.260000e-02   p_cons 5.738000e-01   p_joint 2.152000e-01

Joint ci ratio: 8.590112e-02	ci left: 9.023491e-02	ci right 9.838348e-02	k: 1885	n:20000
Cons ci ratio: 2.358611e-02	ci left: 5.731235e-01	ci right 5.868532e-01	k: 11600	n:20000
KS ci ratio: 1.336294e-01	ci left: 3.848736e-02	ci right 4.404701e-02	k: 824	n:20000
PTPN9   20000 perm   3 sec   (5742 perm/sec)   p_kst 4.120000e-02   p_cons 5.800000e-01   p_joint 9.425000e-02

Joint ci ratio: 8.121018e-02	ci left: 6.913257e-02	ci right 7.501729e-02	k: 2161	n:30000
Cons ci ratio: 1.924913e-02	ci left: 5.746245e-01	ci right 5.858266e-01	k: 17407	n:30000
KS ci ratio: 1.088110e-01	ci left: 3.920603e-02	ci right 4.374998e-02	k: 1243	n:30000
PTPN9   30000 perm   6 sec   (5442 perm/sec)   p_kst 4.143333e-02   p_cons 5.802333e-01   p_joint 7.203333e-02

Joint ci ratio: 6.566646e-02	ci left: 7.910757e-02	ci right 8.450333e-02	k: 3271	n:40000
Cons ci ratio: 1.669636e-02	ci left: 5.746193e-01	ci right 5.843192e-01	k: 23179	n:40000
KS ci ratio: 9.467098e-02	ci left: 3.915097e-02	ci right 4.306601e-02	k: 1643	n:40000
PTPN9   40000 perm   8 sec   (5249 perm/sec)   p_kst 4.107500e-02   p_cons 5.794750e-01   p_joint 8.177500e-02

Outputting figure to mutsig2_images.part000000000141/PTPN9.3_1834_40000_0.041075_0.57947_0.081775.png
                gene_name: PTPN9
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.085 

Current progress: 74 percent done.
PUS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.767703e-02	ci left: 6.579673e-01	ci right 6.765351e-01	k: 6673	n:10000
KS ci ratio: 1.842942e-02	ci left: 8.113112e-01	ci right 8.265025e-01	k: 8190	n:10000
PUS3   10000 perm   2 sec   (6168 perm/sec)   p_kst 8.190000e-01   p_cons 6.673000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/PUS3.3_1458_10000_0.819_0.6673_1.png
                gene_name: PUS3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
PTPN7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.321103e-02	ci left: 7.316880e-01	ci right 7.489718e-01	k: 7404	n:10000
Cons ci ratio: 1.293223e-02	ci left: 8.959025e-01	ci right 9.076623e-01	k: 9019	n:10000
KS ci ratio: 3.705782e-02	ci left: 5.181586e-01	ci right 5.378251e-01	k: 5280	n:10000
PTPN7   10000 perm   2 sec   (6435 perm/sec)   p_kst 5.280000e-01   p_cons 9.019000e-01   p_joint 7.404000e-01

Outputting figure to mutsig2_images.part000000000141/PTPN7.2_1236_10000_0.528_0.9019_0.7404.png
                gene_name: PTPN7
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 78 percent done.
PTPRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.539580e-02	ci left: 8.595750e-01	ci right 8.730108e-01	k: 8664	n:10000
KS ci ratio: 1.350161e-02	ci left: 8.878013e-01	ci right 8.999681e-01	k: 8940	n:10000
PTPRA   10000 perm   2 sec   (6007 perm/sec)   p_kst 8.940000e-01   p_cons 8.664000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/PTPRA.2_2493_10000_0.894_0.8664_1.png
                gene_name: PTPRA
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
PTRF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.172038e-02	ci left: 7.566645e-01	ci right 7.733809e-01	k: 7651	n:10000
KS ci ratio: 3.506102e-02	ci left: 5.456958e-01	ci right 5.652719e-01	k: 5555	n:10000
PTRF   10000 perm   2 sec   (6565 perm/sec)   p_kst 5.555000e-01   p_cons 7.651000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/PTRF.2_1181_10000_0.5555_0.7651_1.png
                gene_name: PTRF
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
PTX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.083799e-01	ci left: 1.344771e-02	ci right 1.844006e-02	k: 158	n:10000
Cons ci ratio: 6.109146e-01	ci left: 2.859150e-03	ci right 5.442922e-03	k: 40	n:10000
KS ci ratio: 3.353212e-02	ci left: 5.676469e-01	ci right 5.871080e-01	k: 5774	n:10000
PTX3   10000 perm   2 sec   (6498 perm/sec)   p_kst 5.774000e-01   p_cons 4.000000e-03   p_joint 1.580000e-02

Joint ci ratio: 2.800644e-01	ci left: 8.341806e-03	ci right 1.110354e-02	k: 193	n:20000
Cons ci ratio: 4.780895e-01	ci left: 2.553111e-03	ci right 4.196522e-03	k: 66	n:20000
KS ci ratio: 2.372677e-02	ci left: 5.702176e-01	ci right 5.839600e-01	k: 11542	n:20000
PTX3   20000 perm   3 sec   (5757 perm/sec)   p_kst 5.771000e-01   p_cons 3.300000e-03   p_joint 9.650000e-03

Joint ci ratio: 1.987540e-01	ci left: 1.152696e-02	ci right 1.410200e-02	k: 383	n:30000
Cons ci ratio: 3.855791e-01	ci left: 2.773118e-03	ci right 4.125866e-03	k: 102	n:30000
KS ci ratio: 1.938777e-02	ci left: 5.711186e-01	ci right 5.823332e-01	k: 17302	n:30000
PTX3   30000 perm   5 sec   (5489 perm/sec)   p_kst 5.767333e-01   p_cons 3.400000e-03   p_joint 1.276667e-02

Joint ci ratio: 2.239687e-01	ci left: 6.748716e-03	ci right 8.473923e-03	k: 303	n:40000
Cons ci ratio: 3.355611e-01	ci left: 2.830454e-03	ci right 3.993482e-03	k: 135	n:40000
KS ci ratio: 1.666128e-02	ci left: 5.756458e-01	ci right 5.853425e-01	k: 23220	n:40000
PTX3   40000 perm   8 sec   (5302 perm/sec)   p_kst 5.805000e-01   p_cons 3.375000e-03   p_joint 7.575000e-03

Joint ci ratio: 1.969573e-01	ci left: 7.085623e-03	ci right 8.652325e-03	k: 392	n:50000
Cons ci ratio: 2.975131e-01	ci left: 2.945803e-03	ci right 3.993152e-03	k: 172	n:50000
KS ci ratio: 1.487059e-02	ci left: 5.772014e-01	ci right 5.858691e-01	k: 29077	n:50000
PTX3   50000 perm   10 sec   (5153 perm/sec)   p_kst 5.815400e-01   p_cons 3.440000e-03   p_joint 7.840000e-03

Joint ci ratio: 1.840948e-01	ci left: 6.809320e-03	ci right 8.205619e-03	k: 449	n:60000
Cons ci ratio: 2.733143e-01	ci left: 2.950057e-03	ci right 3.898978e-03	k: 204	n:60000
KS ci ratio: 1.364128e-02	ci left: 5.752043e-01	ci right 5.831214e-01	k: 34750	n:60000
PTX3   60000 perm   12 sec   (5041 perm/sec)   p_kst 5.791667e-01   p_cons 3.400000e-03   p_joint 7.483333e-03

Joint ci ratio: 1.441268e-01	ci left: 9.703001e-03	ci right 1.122370e-02	k: 731	n:70000
Cons ci ratio: 2.494888e-01	ci left: 3.076054e-03	ci right 3.965884e-03	k: 245	n:70000
KS ci ratio: 1.261523e-02	ci left: 5.760473e-01	ci right 5.833747e-01	k: 40580	n:70000
PTX3   70000 perm   14 sec   (4929 perm/sec)   p_kst 5.797143e-01   p_cons 3.500000e-03   p_joint 1.044286e-02

Joint ci ratio: 1.084715e-01	ci left: 1.519052e-02	ci right 1.694483e-02	k: 1284	n:80000
Cons ci ratio: 2.346957e-01	ci left: 3.067300e-03	ci right 3.894353e-03	k: 277	n:80000
KS ci ratio: 1.178964e-02	ci left: 5.767335e-01	ci right 5.835857e-01	k: 46413	n:80000
PTX3   80000 perm   17 sec   (4757 perm/sec)   p_kst 5.801625e-01   p_cons 3.462500e-03   p_joint 1.605000e-02

Joint ci ratio: 1.033866e-01	ci left: 1.490875e-02	ci right 1.654490e-02	k: 1414	n:90000
Cons ci ratio: 2.226166e-01	ci left: 3.051211e-03	ci right 3.825783e-03	k: 308	n:90000
KS ci ratio: 1.111378e-02	ci left: 5.770010e-01	ci right 5.834605e-01	k: 52221	n:90000
PTX3   90000 perm   19 sec   (4671 perm/sec)   p_kst 5.802333e-01   p_cons 3.422222e-03   p_joint 1.571111e-02

Joint ci ratio: 1.130526e-01	ci left: 1.120794e-02	ci right 1.256059e-02	k: 1187	n:100000
Cons ci ratio: 2.125429e-01	ci left: 3.029745e-03	ci right 3.759528e-03	k: 338	n:100000
KS ci ratio: 1.052278e-02	ci left: 5.781248e-01	ci right 5.842505e-01	k: 58119	n:100000
PTX3   100000 perm   22 sec   (4574 perm/sec)   p_kst 5.811900e-01   p_cons 3.380000e-03   p_joint 1.187000e-02

Joint ci ratio: 1.057939e-01	ci left: 1.167469e-02	ci right 1.298757e-02	k: 1355	n:110000
Cons ci ratio: 2.037236e-01	ci left: 3.012828e-03	ci right 3.704676e-03	k: 368	n:110000
KS ci ratio: 1.003719e-02	ci left: 5.780685e-01	ci right 5.839090e-01	k: 63909	n:110000
PTX3   110000 perm   24 sec   (4490 perm/sec)   p_kst 5.809909e-01   p_cons 3.345455e-03   p_joint 1.231818e-02

Joint ci ratio: 1.030782e-01	ci left: 1.129413e-02	ci right 1.252963e-02	k: 1428	n:120000
Cons ci ratio: 1.969109e-01	ci left: 2.967553e-03	ci right 3.623481e-03	k: 394	n:120000
KS ci ratio: 9.611681e-03	ci left: 5.781022e-01	ci right 5.836939e-01	k: 69708	n:120000
PTX3   120000 perm   27 sec   (4409 perm/sec)   p_kst 5.809000e-01   p_cons 3.283333e-03   p_joint 1.190000e-02

Joint ci ratio: 9.985631e-02	ci left: 1.113003e-02	ci right 1.230729e-02	k: 1522	n:130000
Cons ci ratio: 1.911949e-01	ci left: 2.914919e-03	ci right 3.538335e-03	k: 418	n:130000
KS ci ratio: 9.246872e-03	ci left: 5.775655e-01	ci right 5.829386e-01	k: 75433	n:130000
PTX3   130000 perm   30 sec   (4335 perm/sec)   p_kst 5.802538e-01   p_cons 3.215385e-03   p_joint 1.170769e-02

Joint ci ratio: 9.963438e-02	ci left: 1.039054e-02	ci right 1.148699e-02	k: 1530	n:140000
Cons ci ratio: 1.834729e-01	ci left: 2.951803e-03	ci right 3.554776e-03	k: 454	n:140000
KS ci ratio: 8.904184e-03	ci left: 5.780099e-01	ci right 5.831867e-01	k: 81284	n:140000
PTX3   140000 perm   33 sec   (4263 perm/sec)   p_kst 5.806000e-01   p_cons 3.242857e-03   p_joint 1.092857e-02

Joint ci ratio: 9.632597e-02	ci left: 1.039370e-02	ci right 1.145200e-02	k: 1637	n:150000
Cons ci ratio: 1.782634e-01	ci left: 2.926864e-03	ci right 3.505935e-03	k: 481	n:150000
KS ci ratio: 8.602264e-03	ci left: 5.780979e-01	ci right 5.830990e-01	k: 87090	n:150000
PTX3   150000 perm   36 sec   (4194 perm/sec)   p_kst 5.806000e-01   p_cons 3.206667e-03   p_joint 1.091333e-02

Joint ci ratio: 8.989926e-02	ci left: 1.121551e-02	ci right 1.227730e-02	k: 1878	n:160000
Cons ci ratio: 1.722894e-01	ci left: 2.947117e-03	ci right 3.508623e-03	k: 515	n:160000
KS ci ratio: 8.332210e-03	ci left: 5.779961e-01	ci right 5.828385e-01	k: 92867	n:160000
PTX3   160000 perm   39 sec   (4132 perm/sec)   p_kst 5.804187e-01   p_cons 3.218750e-03   p_joint 1.173750e-02

Joint ci ratio: 8.654724e-02	ci left: 1.140720e-02	ci right 1.244484e-02	k: 2026	n:170000
Cons ci ratio: 1.661224e-01	ci left: 2.993461e-03	ci right 3.541342e-03	k: 554	n:170000
KS ci ratio: 8.081306e-03	ci left: 5.781970e-01	ci right 5.828944e-01	k: 98693	n:170000
PTX3   170000 perm   42 sec   (4066 perm/sec)   p_kst 5.805471e-01   p_cons 3.258824e-03   p_joint 1.191765e-02

Joint ci ratio: 8.401448e-02	ci left: 1.144768e-02	ci right 1.245702e-02	k: 2150	n:180000
Cons ci ratio: 1.623659e-01	ci left: 2.965662e-03	ci right 3.494982e-03	k: 580	n:180000
KS ci ratio: 7.855544e-03	ci left: 5.781440e-01	ci right 5.827090e-01	k: 104477	n:180000
PTX3   180000 perm   45 sec   (4005 perm/sec)   p_kst 5.804278e-01   p_cons 3.222222e-03   p_joint 1.194444e-02

Joint ci ratio: 8.506715e-02	ci left: 1.058222e-02	ci right 1.152753e-02	k: 2099	n:190000
Cons ci ratio: 1.570465e-01	ci left: 3.011694e-03	ci right 3.529960e-03	k: 620	n:190000
KS ci ratio: 7.645803e-03	ci left: 5.782193e-01	ci right 5.826624e-01	k: 110284	n:190000
PTX3   190000 perm   48 sec   (3944 perm/sec)   p_kst 5.804421e-01   p_cons 3.263158e-03   p_joint 1.104737e-02

Joint ci ratio: 9.628126e-02	ci left: 7.824050e-03	ci right 8.620302e-03	k: 1643	n:200000
Cons ci ratio: 1.541004e-01	ci left: 2.976433e-03	ci right 3.478136e-03	k: 644	n:200000
KS ci ratio: 7.455149e-03	ci left: 5.780835e-01	ci right 5.824142e-01	k: 116050	n:200000
PTX3   200000 perm   51 sec   (3887 perm/sec)   p_kst 5.802500e-01   p_cons 3.220000e-03   p_joint 8.215000e-03

Joint ci ratio: 8.464545e-02	ci left: 9.681397e-03	ci right 1.054173e-02	k: 2122	n:210000
Cons ci ratio: 1.500812e-01	ci left: 2.995025e-03	ci right 3.485512e-03	k: 679	n:210000
KS ci ratio: 7.276798e-03	ci left: 5.780476e-01	ci right 5.822740e-01	k: 121834	n:210000
PTX3   210000 perm   55 sec   (3834 perm/sec)   p_kst 5.801619e-01   p_cons 3.233333e-03   p_joint 1.010476e-02

Joint ci ratio: 7.640686e-02	ci left: 1.137077e-02	ci right 1.227852e-02	k: 2600	n:220000
Cons ci ratio: 1.454454e-01	ci left: 3.051501e-03	ci right 3.534460e-03	k: 723	n:220000
KS ci ratio: 7.108806e-03	ci left: 5.781435e-01	ci right 5.822726e-01	k: 127646	n:220000
PTX3   220000 perm   58 sec   (3782 perm/sec)   p_kst 5.802091e-01   p_cons 3.286364e-03   p_joint 1.181818e-02

Joint ci ratio: 7.755031e-02	ci left: 1.056068e-02	ci right 1.141693e-02	k: 2526	n:230000
Cons ci ratio: 1.415846e-01	ci left: 3.086499e-03	ci right 3.560936e-03	k: 763	n:230000
KS ci ratio: 6.959199e-03	ci left: 5.777231e-01	ci right 5.817619e-01	k: 133341	n:230000
PTX3   230000 perm   62 sec   (3732 perm/sec)   p_kst 5.797435e-01   p_cons 3.317391e-03   p_joint 1.098261e-02

Joint ci ratio: 7.880678e-02	ci left: 9.801849e-03	ci right 1.061005e-02	k: 2448	n:240000
Cons ci ratio: 1.390608e-01	ci left: 3.070464e-03	ci right 3.533326e-03	k: 791	n:240000
KS ci ratio: 6.814913e-03	ci left: 5.776054e-01	ci right 5.815593e-01	k: 139100	n:240000
PTX3   240000 perm   65 sec   (3681 perm/sec)   p_kst 5.795833e-01   p_cons 3.295833e-03   p_joint 1.020000e-02

Joint ci ratio: 8.029282e-02	ci left: 9.064639e-03	ci right 9.826799e-03	k: 2360	n:250000
Cons ci ratio: 1.362512e-01	ci left: 3.075100e-03	ci right 3.528536e-03	k: 824	n:250000
KS ci ratio: 6.676449e-03	ci left: 5.777021e-01	ci right 5.815760e-01	k: 144910	n:250000
PTX3   250000 perm   69 sec   (3634 perm/sec)   p_kst 5.796400e-01   p_cons 3.296000e-03   p_joint 9.440000e-03

Joint ci ratio: 8.243029e-02	ci left: 8.267477e-03	ci right 8.982003e-03	k: 2241	n:260000
Cons ci ratio: 1.332165e-01	ci left: 3.098057e-03	ci right 3.543897e-03	k: 862	n:260000
KS ci ratio: 6.542841e-03	ci left: 5.780346e-01	ci right 5.818328e-01	k: 150783	n:260000
PTX3   260000 perm   72 sec   (3587 perm/sec)   p_kst 5.799346e-01   p_cons 3.315385e-03   p_joint 8.619231e-03

Joint ci ratio: 8.091098e-02	ci left: 8.269659e-03	ci right 8.970580e-03	k: 2326	n:270000
Cons ci ratio: 1.303758e-01	ci left: 3.119417e-03	ci right 3.558017e-03	k: 900	n:270000
KS ci ratio: 6.424067e-03	ci left: 5.778021e-01	ci right 5.815295e-01	k: 156510	n:270000
PTX3   270000 perm   76 sec   (3541 perm/sec)   p_kst 5.796667e-01   p_cons 3.333333e-03   p_joint 8.614815e-03

Joint ci ratio: 7.594677e-02	ci left: 9.066901e-03	ci right 9.786165e-03	k: 2638	n:280000
Cons ci ratio: 1.277095e-01	ci left: 3.139345e-03	ci right 3.571036e-03	k: 938	n:280000
KS ci ratio: 6.308248e-03	ci left: 5.778405e-01	ci right 5.815007e-01	k: 162308	n:280000
PTX3   280000 perm   80 sec   (3498 perm/sec)   p_kst 5.796714e-01   p_cons 3.350000e-03   p_joint 9.421429e-03

Joint ci ratio: 9.205649e-02	ci left: 5.927638e-03	ci right 6.502987e-03	k: 1801	n:290000
Cons ci ratio: 1.261759e-01	ci left: 3.107880e-03	ci right 3.529728e-03	k: 961	n:290000
KS ci ratio: 6.195581e-03	ci left: 5.781045e-01	ci right 5.817008e-01	k: 168172	n:290000
PTX3   290000 perm   84 sec   (3454 perm/sec)   p_kst 5.799034e-01   p_cons 3.313793e-03   p_joint 6.210345e-03

Joint ci ratio: 9.460836e-02	ci left: 5.420706e-03	ci right 5.962243e-03	k: 1706	n:300000
Cons ci ratio: 1.243169e-01	ci left: 3.097921e-03	ci right 3.511766e-03	k: 990	n:300000
KS ci ratio: 6.091490e-03	ci left: 5.781314e-01	ci right 5.816671e-01	k: 173970	n:300000
PTX3   300000 perm   88 sec   (3411 perm/sec)   p_kst 5.799000e-01   p_cons 3.300000e-03   p_joint 5.686667e-03

Joint ci ratio: 8.925393e-02	ci left: 5.907765e-03	ci right 6.462817e-03	k: 1916	n:310000
Cons ci ratio: 1.219988e-01	ci left: 3.116794e-03	ci right 3.524836e-03	k: 1028	n:310000
KS ci ratio: 5.992197e-03	ci left: 5.781795e-01	ci right 5.816577e-01	k: 179775	n:310000
PTX3   310000 perm   92 sec   (3368 perm/sec)   p_kst 5.799194e-01   p_cons 3.316129e-03   p_joint 6.180645e-03

Joint ci ratio: 8.590068e-02	ci left: 6.187785e-03	ci right 6.746209e-03	k: 2068	n:320000
Cons ci ratio: 1.207750e-01	ci left: 3.083023e-03	ci right 3.482306e-03	k: 1049	n:320000
KS ci ratio: 5.898175e-03	ci left: 5.781782e-01	ci right 5.816016e-01	k: 185565	n:320000
PTX3   320000 perm   96 sec   (3328 perm/sec)   p_kst 5.798906e-01   p_cons 3.278125e-03   p_joint 6.462500e-03

Joint ci ratio: 8.269222e-02	ci left: 6.483846e-03	ci right 7.046080e-03	k: 2231	n:330000
Cons ci ratio: 1.186462e-01	ci left: 3.101304e-03	ci right 3.495377e-03	k: 1087	n:330000
KS ci ratio: 5.811081e-03	ci left: 5.779561e-01	ci right 5.813274e-01	k: 191282	n:330000
PTX3   330000 perm   100 sec   (3287 perm/sec)   p_kst 5.796424e-01   p_cons 3.293939e-03   p_joint 6.760606e-03

Joint ci ratio: 8.341830e-02	ci left: 6.183661e-03	ci right 6.724802e-03	k: 2193	n:340000
Cons ci ratio: 1.171492e-01	ci left: 3.090012e-03	ci right 3.477354e-03	k: 1115	n:340000
KS ci ratio: 5.723930e-03	ci left: 5.780711e-01	ci right 5.813923e-01	k: 197109	n:340000
PTX3   340000 perm   105 sec   (3248 perm/sec)   p_kst 5.797324e-01   p_cons 3.279412e-03   p_joint 6.450000e-03

Joint ci ratio: 8.402549e-02	ci left: 5.920235e-03	ci right 6.442278e-03	k: 2162	n:350000
Cons ci ratio: 1.154546e-01	ci left: 3.093269e-03	ci right 3.475028e-03	k: 1148	n:350000
KS ci ratio: 5.637246e-03	ci left: 5.784686e-01	ci right 5.817415e-01	k: 203037	n:350000
PTX3   350000 perm   109 sec   (3210 perm/sec)   p_kst 5.801057e-01   p_cons 3.280000e-03   p_joint 6.177143e-03

Joint ci ratio: 8.273434e-02	ci left: 5.940737e-03	ci right 6.456149e-03	k: 2230	n:360000
Cons ci ratio: 1.136869e-01	ci left: 3.104480e-03	ci right 3.481363e-03	k: 1184	n:360000
KS ci ratio: 5.561160e-03	ci left: 5.782495e-01	ci right 5.814770e-01	k: 208751	n:360000
PTX3   360000 perm   113 sec   (3173 perm/sec)   p_kst 5.798639e-01   p_cons 3.288889e-03   p_joint 6.194444e-03

Joint ci ratio: 8.187807e-02	ci left: 5.904584e-03	ci right 6.411305e-03	k: 2277	n:370000
Cons ci ratio: 1.126945e-01	ci left: 3.075722e-03	ci right 3.445638e-03	k: 1205	n:370000
KS ci ratio: 5.486549e-03	ci left: 5.781779e-01	ci right 5.813614e-01	k: 214515	n:370000
PTX3   370000 perm   118 sec   (3135 perm/sec)   p_kst 5.797703e-01   p_cons 3.256757e-03   p_joint 6.154054e-03

Joint ci ratio: 8.455876e-02	ci left: 5.385806e-03	ci right 5.863885e-03	k: 2136	n:380000
Cons ci ratio: 1.113189e-01	ci left: 3.071518e-03	ci right 3.436122e-03	k: 1235	n:380000
KS ci ratio: 5.413722e-03	ci left: 5.782129e-01	ci right 5.813543e-01	k: 220318	n:380000
PTX3   380000 perm   123 sec   (3099 perm/sec)   p_kst 5.797842e-01   p_cons 3.250000e-03   p_joint 5.621053e-03

Joint ci ratio: 8.000511e-02	ci left: 5.873099e-03	ci right 6.365051e-03	k: 2385	n:390000
Cons ci ratio: 1.101671e-01	ci left: 3.057580e-03	ci right 3.416531e-03	k: 1261	n:390000
KS ci ratio: 5.345660e-03	ci left: 5.780694e-01	ci right 5.811704e-01	k: 226052	n:390000
PTX3   390000 perm   127 sec   (3064 perm/sec)   p_kst 5.796205e-01   p_cons 3.233333e-03   p_joint 6.115385e-03

Joint ci ratio: 8.035075e-02	ci left: 5.677251e-03	ci right 6.154949e-03	k: 2365	n:400000
Cons ci ratio: 1.087543e-01	ci left: 3.061382e-03	ci right 3.415875e-03	k: 1294	n:400000
KS ci ratio: 5.279181e-03	ci left: 5.780184e-01	ci right 5.810804e-01	k: 231820	n:400000
PTX3   400000 perm   132 sec   (3028 perm/sec)   p_kst 5.795500e-01   p_cons 3.235000e-03   p_joint 5.912500e-03

Joint ci ratio: 7.936728e-02	ci left: 5.679811e-03	ci right 6.151603e-03	k: 2424	n:410000
Cons ci ratio: 1.074757e-01	ci left: 3.060279e-03	ci right 3.410215e-03	k: 1325	n:410000
KS ci ratio: 5.214991e-03	ci left: 5.779823e-01	ci right 5.810068e-01	k: 237593	n:410000
PTX3   410000 perm   137 sec   (2996 perm/sec)   p_kst 5.794951e-01   p_cons 3.231707e-03   p_joint 5.912195e-03

Joint ci ratio: 8.172810e-02	ci left: 5.224905e-03	ci right 5.672435e-03	k: 2287	n:420000
Cons ci ratio: 1.058506e-01	ci left: 3.082432e-03	ci right 3.429239e-03	k: 1366	n:420000
KS ci ratio: 5.154169e-03	ci left: 5.778458e-01	ci right 5.808341e-01	k: 243323	n:420000
PTX3   420000 perm   142 sec   (2964 perm/sec)   p_kst 5.793405e-01   p_cons 3.252381e-03   p_joint 5.445238e-03

Joint ci ratio: 8.064207e-02	ci left: 5.244657e-03	ci right 5.687628e-03	k: 2349	n:430000
Cons ci ratio: 1.046706e-01	ci left: 3.080942e-03	ci right 3.423480e-03	k: 1397	n:430000
KS ci ratio: 5.096179e-03	ci left: 5.776436e-01	ci right 5.805972e-01	k: 249022	n:430000
PTX3   430000 perm   147 sec   (2934 perm/sec)   p_kst 5.791209e-01   p_cons 3.248837e-03   p_joint 5.462791e-03

Joint ci ratio: 7.974795e-02	ci left: 5.243499e-03	ci right 5.681234e-03	k: 2402	n:440000
Cons ci ratio: 1.036020e-01	ci left: 3.075113e-03	ci right 3.413299e-03	k: 1426	n:440000
KS ci ratio: 5.039632e-03	ci left: 5.774963e-01	ci right 5.804163e-01	k: 254741	n:440000
PTX3   440000 perm   152 sec   (2903 perm/sec)   p_kst 5.789568e-01   p_cons 3.240909e-03   p_joint 5.459091e-03

Joint ci ratio: 7.896379e-02	ci left: 5.231525e-03	ci right 5.663769e-03	k: 2450	n:450000
Cons ci ratio: 1.025655e-01	ci left: 3.069559e-03	ci right 3.403554e-03	k: 1455	n:450000
KS ci ratio: 4.985175e-03	ci left: 5.773313e-01	ci right 5.802188e-01	k: 260449	n:450000
PTX3   450000 perm   157 sec   (2873 perm/sec)   p_kst 5.787756e-01   p_cons 3.233333e-03   p_joint 5.444444e-03

Joint ci ratio: 7.817086e-02	ci left: 5.224356e-03	ci right 5.651475e-03	k: 2500	n:460000
Cons ci ratio: 1.013542e-01	ci left: 3.076977e-03	ci right 3.407590e-03	k: 1490	n:460000
KS ci ratio: 4.931345e-03	ci left: 5.772824e-01	ci right 5.801383e-01	k: 266207	n:460000
PTX3   460000 perm   162 sec   (2843 perm/sec)   p_kst 5.787109e-01   p_cons 3.239130e-03   p_joint 5.434783e-03

Joint ci ratio: 7.729480e-02	ci left: 5.232119e-03	ci right 5.654864e-03	k: 2557	n:470000
Cons ci ratio: 1.002838e-01	ci left: 3.077878e-03	ci right 3.404889e-03	k: 1522	n:470000
KS ci ratio: 4.876795e-03	ci left: 5.774784e-01	ci right 5.803036e-01	k: 272079	n:470000
PTX3   470000 perm   167 sec   (2814 perm/sec)   p_kst 5.788915e-01   p_cons 3.238298e-03   p_joint 5.440426e-03

Joint ci ratio: 7.644754e-02	ci left: 5.239585e-03	ci right 5.658086e-03	k: 2614	n:480000
Cons ci ratio: 9.905510e-02	ci left: 3.090950e-03	ci right 3.415092e-03	k: 1560	n:480000
KS ci ratio: 4.826345e-03	ci left: 5.774309e-01	ci right 5.802265e-01	k: 277838	n:480000
PTX3   480000 perm   172 sec   (2785 perm/sec)   p_kst 5.788292e-01   p_cons 3.250000e-03   p_joint 5.445833e-03

Outputting figure to mutsig2_images.part000000000141/PTX3.2_1158_480000_0.57883_0.00325_0.0054458.png
                gene_name: PTX3
               theta_stop: 0.099 
                    nperm: 480000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.0032 
      ci_cons_bounds_left: 0.0031 
     ci_cons_bounds_right: 0.0034 
                  p_joint: 0.0054 
     ci_joint_bounds_left: 0.0052 
    ci_joint_bounds_right: 0.0057 

Current progress: 83 percent done.
PURG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.246516e-02	ci left: 5.833956e-01	ci right 6.027502e-01	k: 5931	n:10000
Cons ci ratio: 6.049727e-02	ci left: 2.866670e-01	ci right 3.046522e-01	k: 2956	n:10000
KS ci ratio: 3.805849e-02	ci left: 5.048513e-01	ci right 5.245401e-01	k: 5147	n:10000
PURG   10000 perm   2 sec   (6503 perm/sec)   p_kst 5.147000e-01   p_cons 2.956000e-01   p_joint 5.931000e-01

Outputting figure to mutsig2_images.part000000000141/PURG.2_1157_10000_0.5147_0.2956_0.5931.png
                gene_name: PURG
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 84 percent done.
PVRL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.586887e-02	ci left: 6.874832e-01	ci right 7.056022e-01	k: 6966	n:10000
KS ci ratio: 3.058833e-02	ci left: 6.119096e-01	ci right 6.310196e-01	k: 6215	n:10000
PVRL3   10000 perm   2 sec   (6308 perm/sec)   p_kst 6.215000e-01   p_cons 6.966000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/PVRL3.2_1674_10000_0.6215_0.6966_1.png
                gene_name: PVRL3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
PWWP2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
Cons ci ratio: 1.003866e-01	ci left: 1.256193e-01	ci right 1.389957e-01	k: 1322	n:10000
KS ci ratio: 3.238453e-02	ci left: 5.845997e-01	ci right 6.039453e-01	k: 5943	n:10000
PWWP2A   10000 perm   2 sec   (5918 perm/sec)   p_kst 5.943000e-01   p_cons 1.322000e-01   p_joint 1.802000e-01

Joint ci ratio: 5.802403e-02	ci left: 1.803811e-01	ci right 1.912104e-01	k: 3715	n:20000
Cons ci ratio: 7.164200e-02	ci left: 1.255159e-01	ci right 1.348919e-01	k: 2603	n:20000
KS ci ratio: 2.270405e-02	ci left: 5.916172e-01	ci right 6.052541e-01	k: 11969	n:20000
PWWP2A   20000 perm   4 sec   (5333 perm/sec)   p_kst 5.984500e-01   p_cons 1.301500e-01   p_joint 1.857500e-01

Outputting figure to mutsig2_images.part000000000141/PWWP2A.2_2418_20000_0.59845_0.13015_0.18575.png
                gene_name: PWWP2A
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 88 percent done.
PXMP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.472752e-02	ci left: 1.392311e-01	ci right 1.531757e-01	k: 1461	n:10000
Cons ci ratio: 2.221543e-02	ci left: 7.483685e-01	ci right 7.652816e-01	k: 7569	n:10000
KS ci ratio: 2.305278e-01	ci left: 2.485465e-02	ci right 3.142409e-02	k: 280	n:10000
PXMP4   10000 perm   1 sec   (6746 perm/sec)   p_kst 2.800000e-02   p_cons 7.569000e-01   p_joint 1.461000e-01

Joint ci ratio: 5.191207e-02	ci left: 2.160579e-01	ci right 2.276231e-01	k: 4436	n:20000
Cons ci ratio: 1.571730e-02	ci left: 7.506914e-01	ci right 7.626339e-01	k: 15134	n:20000
KS ci ratio: 1.639141e-01	ci left: 2.551743e-02	ci right 3.012122e-02	k: 555	n:20000
PXMP4   20000 perm   3 sec   (6008 perm/sec)   p_kst 2.775000e-02   p_cons 7.567000e-01   p_joint 2.218000e-01

Joint ci ratio: 4.184721e-02	ci left: 2.215420e-01	ci right 2.310444e-01	k: 6788	n:30000
Cons ci ratio: 1.253447e-02	ci left: 7.604284e-01	ci right 7.700535e-01	k: 22958	n:30000
KS ci ratio: 1.352610e-01	ci left: 2.538853e-02	ci right 2.910379e-02	k: 816	n:30000
PXMP4   30000 perm   5 sec   (5725 perm/sec)   p_kst 2.720000e-02   p_cons 7.652667e-01   p_joint 2.262667e-01

Joint ci ratio: 5.772309e-02	ci left: 1.003832e-01	ci right 1.063746e-01	k: 4134	n:40000
Cons ci ratio: 1.093346e-02	ci left: 7.584743e-01	ci right 7.668376e-01	k: 30507	n:40000
KS ci ratio: 1.172691e-01	ci left: 2.557923e-02	ci right 2.878991e-02	k: 1086	n:40000
PXMP4   40000 perm   7 sec   (5533 perm/sec)   p_kst 2.715000e-02   p_cons 7.626750e-01   p_joint 1.033500e-01

Joint ci ratio: 5.181246e-02	ci left: 1.000523e-01	ci right 1.053939e-01	k: 5135	n:50000
Cons ci ratio: 9.769325e-03	ci left: 7.592877e-01	ci right 7.667618e-01	k: 38152	n:50000
KS ci ratio: 1.040167e-01	ci left: 2.618152e-02	ci right 2.907367e-02	k: 1380	n:50000
PXMP4   50000 perm   9 sec   (5391 perm/sec)   p_kst 2.760000e-02   p_cons 7.630400e-01   p_joint 1.027000e-01

Joint ci ratio: 4.842779e-02	ci left: 9.606081e-02	ci right 1.008448e-01	k: 5906	n:60000
Cons ci ratio: 8.905968e-03	ci left: 7.601124e-01	ci right 7.669288e-01	k: 45812	n:60000
KS ci ratio: 9.567481e-02	ci left: 2.591300e-02	ci right 2.853300e-02	k: 1632	n:60000
PXMP4   60000 perm   11 sec   (5262 perm/sec)   p_kst 2.720000e-02   p_cons 7.635333e-01   p_joint 9.843333e-02

Outputting figure to mutsig2_images.part000000000141/PXMP4.2_655_60000_0.0272_0.76353_0.098433.png
                gene_name: PXMP4
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 90 percent done.
PYDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.874988e-02	ci left: 6.407601e-01	ci right 6.595523e-01	k: 6502	n:10000
KS ci ratio: 2.946119e-02	ci left: 6.294971e-01	ci right 6.484219e-01	k: 6390	n:10000
PYDC1   10000 perm   1 sec   (7449 perm/sec)   p_kst 6.390000e-01   p_cons 6.502000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000141/PYDC1.2_274_10000_0.639_0.6502_1.png
                gene_name: PYDC1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
PYGL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.308762e-02	ci left: 5.741659e-01	ci right 5.935853e-01	k: 5839	n:10000
Cons ci ratio: 1.824276e-02	ci left: 8.143595e-01	ci right 8.294525e-01	k: 8220	n:10000
KS ci ratio: 3.996185e-02	ci left: 4.804561e-01	ci right 5.001496e-01	k: 4903	n:10000
PYGL   10000 perm   2 sec   (4850 perm/sec)   p_kst 4.903000e-01   p_cons 8.220000e-01   p_joint 5.839000e-01

Outputting figure to mutsig2_images.part000000000141/PYGL.2_2624_10000_0.4903_0.822_0.5839.png
                gene_name: PYGL
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 93 percent done.
PYGO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.325900e-01	ci left: 1.142242e-02	ci right 1.606722e-02	k: 136	n:10000
Cons ci ratio: 4.012206e-02	ci left: 4.784575e-01	ci right 4.981493e-01	k: 4883	n:10000
KS ci ratio: 1.306013e+00	ci left: 3.454445e-04	ci right 1.575707e-03	k: 8	n:10000
PYGO2   10000 perm   1 sec   (6674 perm/sec)   p_kst 8.000000e-04   p_cons 4.883000e-01   p_joint 1.360000e-02

Joint ci ratio: 3.761731e-01	ci left: 4.386465e-03	ci right 6.461320e-03	k: 107	n:20000
Cons ci ratio: 2.884236e-02	ci left: 4.731543e-01	ci right 4.870515e-01	k: 9602	n:20000
KS ci ratio: 1.047271e+00	ci left: 3.461416e-04	ci right 1.111263e-03	k: 13	n:20000
PYGO2   20000 perm   3 sec   (5888 perm/sec)   p_kst 6.500000e-04   p_cons 4.801000e-01   p_joint 5.350000e-03

Joint ci ratio: 8.354264e-01	ci left: 4.333616e-04	ci right 1.069826e-03	k: 21	n:30000
Cons ci ratio: 2.348907e-02	ci left: 4.757314e-01	ci right 4.870723e-01	k: 14442	n:30000
KS ci ratio: 8.354264e-01	ci left: 4.333616e-04	ci right 1.069826e-03	k: 21	n:30000
PYGO2   30000 perm   5 sec   (5594 perm/sec)   p_kst 7.000000e-04   p_cons 4.814000e-01   p_joint 7.000000e-04

Joint ci ratio: 7.154134e-01	ci left: 4.855960e-04	ci right 1.041056e-03	k: 29	n:40000
Cons ci ratio: 2.032204e-02	ci left: 4.769923e-01	ci right 4.868104e-01	k: 19276	n:40000
KS ci ratio: 7.154134e-01	ci left: 4.855960e-04	ci right 1.041056e-03	k: 29	n:40000
PYGO2   40000 perm   7 sec   (5439 perm/sec)   p_kst 7.250000e-04   p_cons 4.819000e-01   p_joint 7.250000e-04

Joint ci ratio: 4.351983e-01	ci left: 1.268898e-03	ci right 1.990949e-03	k: 80	n:50000
Cons ci ratio: 1.814691e-02	ci left: 4.783311e-01	ci right 4.871109e-01	k: 24136	n:50000
KS ci ratio: 6.623624e-01	ci left: 4.709643e-04	ci right 9.501034e-04	k: 34	n:50000
PYGO2   50000 perm   9 sec   (5325 perm/sec)   p_kst 6.800000e-04   p_cons 4.827200e-01   p_joint 1.600000e-03

Joint ci ratio: 4.083714e-01	ci left: 1.221296e-03	ci right 1.861809e-03	k: 91	n:60000
Cons ci ratio: 1.658479e-02	ci left: 4.781444e-01	ci right 4.861573e-01	k: 28929	n:60000
KS ci ratio: 6.119868e-01	ci left: 4.763178e-04	ci right 9.077013e-04	k: 40	n:60000
PYGO2   60000 perm   12 sec   (5168 perm/sec)   p_kst 6.666667e-04   p_cons 4.821500e-01   p_joint 1.516667e-03

Joint ci ratio: 3.717722e-01	ci left: 1.291695e-03	ci right 1.893691e-03	k: 110	n:70000
Cons ci ratio: 1.533593e-02	ci left: 4.790490e-01	ci right 4.864667e-01	k: 33793	n:70000
KS ci ratio: 5.487059e-01	ci left: 5.302017e-04	ci right 9.415896e-04	k: 50	n:70000
PYGO2   70000 perm   14 sec   (5057 perm/sec)   p_kst 7.142857e-04   p_cons 4.827571e-01   p_joint 1.571429e-03

Joint ci ratio: 3.489441e-01	ci left: 1.300773e-03	ci right 1.861370e-03	k: 125	n:80000
Cons ci ratio: 1.435575e-02	ci left: 4.789318e-01	ci right 4.858694e-01	k: 38592	n:80000
KS ci ratio: 5.145314e-01	ci left: 5.396838e-04	ci right 9.230292e-04	k: 57	n:80000
PYGO2   80000 perm   16 sec   (4914 perm/sec)   p_kst 7.125000e-04   p_cons 4.824000e-01   p_joint 1.562500e-03

Joint ci ratio: 3.334348e-01	ci left: 1.278155e-03	ci right 1.799266e-03	k: 137	n:90000
Cons ci ratio: 1.355858e-02	ci left: 4.782529e-01	ci right 4.847927e-01	k: 43337	n:90000
KS ci ratio: 4.898230e-01	ci left: 5.379398e-04	ci right 8.955165e-04	k: 63	n:90000
PYGO2   90000 perm   19 sec   (4814 perm/sec)   p_kst 7.000000e-04   p_cons 4.815222e-01   p_joint 1.522222e-03

Joint ci ratio: 4.494817e-01	ci left: 5.899669e-04	ci right 9.400421e-04	k: 75	n:100000
Cons ci ratio: 1.286751e-02	ci left: 4.782388e-01	ci right 4.844423e-01	k: 48134	n:100000
KS ci ratio: 4.494817e-01	ci left: 5.899669e-04	ci right 9.400421e-04	k: 75	n:100000
PYGO2   100000 perm   21 sec   (4725 perm/sec)   p_kst 7.500000e-04   p_cons 4.813400e-01   p_joint 7.500000e-04

Joint ci ratio: 5.383212e-01	ci left: 3.530749e-04	ci right 6.198733e-04	k: 52	n:110000
Cons ci ratio: 1.225964e-02	ci left: 4.787523e-01	ci right 4.846669e-01	k: 52988	n:110000
KS ci ratio: 4.201000e-01	ci left: 6.253997e-04	ci right 9.654504e-04	k: 86	n:110000
PYGO2   110000 perm   24 sec   (4643 perm/sec)   p_kst 7.818182e-04   p_cons 4.817091e-01   p_joint 4.727273e-04

Joint ci ratio: 5.190912e-01	ci left: 3.525336e-04	ci right 6.059633e-04	k: 56	n:120000
Cons ci ratio: 1.174167e-02	ci left: 4.787109e-01	ci right 4.843733e-01	k: 57785	n:120000
KS ci ratio: 4.085299e-01	ci left: 6.106053e-04	ci right 9.309849e-04	k: 91	n:120000
PYGO2   120000 perm   26 sec   (4562 perm/sec)   p_kst 7.583333e-04   p_cons 4.815417e-01   p_joint 4.666667e-04

Joint ci ratio: 5.102227e-01	ci left: 3.388002e-04	ci right 5.767196e-04	k: 58	n:130000
Cons ci ratio: 1.129485e-02	ci left: 4.782114e-01	ci right 4.836510e-01	k: 62521	n:130000
KS ci ratio: 3.860946e-01	ci left: 6.398040e-04	ci right 9.523896e-04	k: 102	n:130000
PYGO2   130000 perm   29 sec   (4448 perm/sec)   p_kst 7.846154e-04   p_cons 4.809308e-01   p_joint 4.461538e-04

Joint ci ratio: 4.787879e-01	ci left: 3.646210e-04	ci right 5.997342e-04	k: 66	n:140000
Cons ci ratio: 1.088576e-02	ci left: 4.782297e-01	ci right 4.834711e-01	k: 67319	n:140000
KS ci ratio: 3.753204e-01	ci left: 6.328594e-04	ci right 9.313020e-04	k: 108	n:140000
PYGO2   140000 perm   32 sec   (4379 perm/sec)   p_kst 7.714286e-04   p_cons 4.808500e-01   p_joint 4.714286e-04

Joint ci ratio: 4.684187e-01	ci left: 3.579245e-04	ci right 5.821239e-04	k: 69	n:150000
Cons ci ratio: 1.052459e-02	ci left: 4.779420e-01	ci right 4.830054e-01	k: 72071	n:150000
KS ci ratio: 3.562187e-01	ci left: 6.633226e-04	ci right 9.565290e-04	k: 120	n:150000
PYGO2   150000 perm   35 sec   (4281 perm/sec)   p_kst 8.000000e-04   p_cons 4.804733e-01   p_joint 4.600000e-04

Joint ci ratio: 4.555839e-01	ci left: 3.576437e-04	ci right 5.736322e-04	k: 73	n:160000
Cons ci ratio: 1.018297e-02	ci left: 4.783866e-01	ci right 4.832891e-01	k: 76934	n:160000
KS ci ratio: 3.463426e-01	ci left: 6.617552e-04	ci right 9.443408e-04	k: 127	n:160000
PYGO2   160000 perm   38 sec   (4218 perm/sec)   p_kst 7.937500e-04   p_cons 4.808375e-01   p_joint 4.562500e-04

Joint ci ratio: 4.381649e-01	ci left: 3.679287e-04	ci right 5.791290e-04	k: 79	n:170000
Cons ci ratio: 9.878395e-03	ci left: 4.784870e-01	ci right 4.832430e-01	k: 81747	n:170000
KS ci ratio: 3.347722e-01	ci left: 6.712440e-04	ci right 9.462412e-04	k: 136	n:170000
PYGO2   170000 perm   41 sec   (4159 perm/sec)   p_kst 8.000000e-04   p_cons 4.808647e-01   p_joint 4.647059e-04

Joint ci ratio: 4.276061e-01	ci left: 3.672886e-04	ci right 5.715850e-04	k: 83	n:180000
Cons ci ratio: 9.597051e-03	ci left: 4.787116e-01	ci right 4.833335e-01	k: 86584	n:180000
KS ci ratio: 3.265351e-01	ci left: 6.696137e-04	ci right 9.357779e-04	k: 143	n:180000
PYGO2   180000 perm   44 sec   (4099 perm/sec)   p_kst 7.944444e-04   p_cons 4.810222e-01   p_joint 4.611111e-04

Joint ci ratio: 4.154207e-01	ci left: 3.714822e-04	ci right 5.705928e-04	k: 88	n:190000
Cons ci ratio: 9.345641e-03	ci left: 4.785301e-01	ci right 4.830284e-01	k: 91348	n:190000
KS ci ratio: 3.157537e-01	ci left: 6.827620e-04	ci right 9.433842e-04	k: 153	n:190000
PYGO2   190000 perm   47 sec   (4043 perm/sec)   p_kst 8.052632e-04   p_cons 4.807789e-01   p_joint 4.631579e-04

Joint ci ratio: 3.919010e-01	ci left: 4.023292e-04	ci right 6.026123e-04	k: 99	n:200000
Cons ci ratio: 9.109536e-03	ci left: 4.785581e-01	ci right 4.829424e-01	k: 96150	n:200000
KS ci ratio: 3.005217e-01	ci left: 7.224446e-04	ci right 9.823744e-04	k: 169	n:200000
PYGO2   200000 perm   50 sec   (3988 perm/sec)   p_kst 8.450000e-04   p_cons 4.807500e-01   p_joint 4.950000e-04

Joint ci ratio: 3.824563e-01	ci left: 4.046628e-04	ci right 6.000324e-04	k: 104	n:210000
Cons ci ratio: 8.896235e-03	ci left: 4.782610e-01	ci right 4.825395e-01	k: 100884	n:210000
KS ci ratio: 2.936912e-01	ci left: 7.232989e-04	ci right 9.765208e-04	k: 177	n:210000
PYGO2   210000 perm   53 sec   (3932 perm/sec)   p_kst 8.428571e-04   p_cons 4.804000e-01   p_joint 4.952381e-04

Joint ci ratio: 3.736630e-01	ci left: 4.068368e-04	ci right 5.976351e-04	k: 109	n:220000
Cons ci ratio: 8.690433e-03	ci left: 4.783830e-01	ci right 4.825630e-01	k: 105704	n:220000
KS ci ratio: 2.865363e-01	ci left: 7.283548e-04	ci right 9.760105e-04	k: 186	n:220000
PYGO2   220000 perm   57 sec   (3879 perm/sec)   p_kst 8.454545e-04   p_cons 4.804727e-01   p_joint 4.954545e-04

Joint ci ratio: 3.736671e-01	ci left: 3.891476e-04	ci right 5.716522e-04	k: 109	n:230000
Cons ci ratio: 8.496285e-03	ci left: 4.786127e-01	ci right 4.827008e-01	k: 110551	n:230000
KS ci ratio: 2.791682e-01	ci left: 7.370825e-04	ci right 9.801284e-04	k: 196	n:230000
PYGO2   230000 perm   60 sec   (3827 perm/sec)   p_kst 8.521739e-04   p_cons 4.806565e-01   p_joint 4.739130e-04

Joint ci ratio: 3.533632e-01	ci left: 4.221574e-04	ci right 6.069208e-04	k: 122	n:240000
Cons ci ratio: 8.310499e-03	ci left: 4.790700e-01	ci right 4.830721e-01	k: 115457	n:240000
KS ci ratio: 2.736672e-01	ci left: 7.373940e-04	ci right 9.749275e-04	k: 204	n:240000
PYGO2   240000 perm   64 sec   (3776 perm/sec)   p_kst 8.500000e-04   p_cons 4.810708e-01   p_joint 5.083333e-04

Joint ci ratio: 3.463929e-01	ci left: 4.235138e-04	ci right 6.043945e-04	k: 127	n:250000
Cons ci ratio: 8.145839e-03	ci left: 4.789117e-01	ci right 4.828327e-01	k: 120218	n:250000
KS ci ratio: 2.684790e-01	ci left: 7.377237e-04	ci right 9.700999e-04	k: 212	n:250000
PYGO2   250000 perm   67 sec   (3727 perm/sec)   p_kst 8.480000e-04   p_cons 4.808720e-01   p_joint 5.080000e-04

Joint ci ratio: 3.424050e-01	ci left: 4.177651e-04	ci right 5.936816e-04	k: 130	n:260000
Cons ci ratio: 7.991022e-03	ci left: 4.787394e-01	ci right 4.825841e-01	k: 124972	n:260000
KS ci ratio: 2.641740e-01	ci left: 7.344753e-04	ci right 9.615051e-04	k: 219	n:260000
PYGO2   260000 perm   71 sec   (3680 perm/sec)   p_kst 8.423077e-04   p_cons 4.806615e-01   p_joint 5.000000e-04

Joint ci ratio: 2.798978e-01	ci left: 6.244357e-04	ci right 8.309697e-04	k: 195	n:270000
Cons ci ratio: 7.840518e-03	ci left: 4.788471e-01	ci right 4.826200e-01	k: 129798	n:270000
KS ci ratio: 2.600697e-01	ci left: 7.314949e-04	ci right 9.535196e-04	k: 226	n:270000
PYGO2   270000 perm   74 sec   (3632 perm/sec)   p_kst 8.370370e-04   p_cons 4.807333e-01   p_joint 7.222222e-04

Joint ci ratio: 2.678628e-01	ci left: 6.620096e-04	ci right 8.699771e-04	k: 213	n:280000
Cons ci ratio: 7.696392e-03	ci left: 4.790656e-01	ci right 4.827705e-01	k: 134657	n:280000
KS ci ratio: 2.556048e-01	ci left: 7.320952e-04	ci right 9.498791e-04	k: 234	n:280000
PYGO2   280000 perm   78 sec   (3585 perm/sec)   p_kst 8.357143e-04   p_cons 4.809179e-01   p_joint 7.607143e-04

Joint ci ratio: 2.647886e-01	ci left: 6.552717e-04	ci right 8.583682e-04	k: 218	n:290000
Cons ci ratio: 7.559409e-03	ci left: 4.793041e-01	ci right 4.829445e-01	k: 139526	n:290000
KS ci ratio: 2.518815e-01	ci left: 7.294534e-04	ci right 9.427946e-04	k: 241	n:290000
PYGO2   290000 perm   82 sec   (3538 perm/sec)   p_kst 8.310345e-04   p_cons 4.811241e-01   p_joint 7.517241e-04

Joint ci ratio: 2.697686e-01	ci left: 6.085472e-04	ci right 8.013098e-04	k: 210	n:300000
Cons ci ratio: 7.430827e-03	ci left: 4.794373e-01	ci right 4.830164e-01	k: 144368	n:300000
KS ci ratio: 2.488169e-01	ci left: 7.238833e-04	ci right 9.326207e-04	k: 247	n:300000
PYGO2   300000 perm   86 sec   (3491 perm/sec)   p_kst 8.233333e-04   p_cons 4.812267e-01   p_joint 7.000000e-04

Joint ci ratio: 2.678727e-01	ci left: 5.979414e-04	ci right 7.857899e-04	k: 213	n:310000
Cons ci ratio: 7.306040e-03	ci left: 4.797364e-01	ci right 4.832574e-01	k: 149264	n:310000
KS ci ratio: 2.463473e-01	ci left: 7.156602e-04	ci right 9.196645e-04	k: 252	n:310000
PYGO2   310000 perm   90 sec   (3443 perm/sec)   p_kst 8.129032e-04   p_cons 4.814968e-01   p_joint 6.870968e-04

Joint ci ratio: 2.635963e-01	ci left: 5.996737e-04	ci right 7.845627e-04	k: 220	n:320000
Cons ci ratio: 7.195209e-03	ci left: 4.794706e-01	ci right 4.829360e-01	k: 153985	n:320000
KS ci ratio: 2.425426e-01	ci left: 7.167647e-04	ci right 9.174532e-04	k: 260	n:320000
PYGO2   320000 perm   94 sec   (3400 perm/sec)   p_kst 8.125000e-04   p_cons 4.812031e-01   p_joint 6.875000e-04

Joint ci ratio: 2.389088e-01	ci left: 7.178249e-04	ci right 9.153534e-04	k: 268	n:330000
Cons ci ratio: 7.086773e-03	ci left: 4.793970e-01	ci right 4.828094e-01	k: 158764	n:330000
KS ci ratio: 2.389088e-01	ci left: 7.178249e-04	ci right 9.153534e-04	k: 268	n:330000
PYGO2   330000 perm   98 sec   (3356 perm/sec)   p_kst 8.121212e-04   p_cons 4.811030e-01   p_joint 8.121212e-04

Joint ci ratio: 2.354337e-01	ci left: 7.188438e-04	ci right 9.133562e-04	k: 276	n:340000
Cons ci ratio: 6.982603e-03	ci left: 4.793634e-01	ci right 4.827252e-01	k: 163555	n:340000
KS ci ratio: 2.354337e-01	ci left: 7.188438e-04	ci right 9.133562e-04	k: 276	n:340000
PYGO2   340000 perm   103 sec   (3315 perm/sec)   p_kst 8.117647e-04   p_cons 4.810441e-01   p_joint 8.117647e-04

Joint ci ratio: 2.316994e-01	ci left: 7.225153e-04	ci right 9.144763e-04	k: 285	n:350000
Cons ci ratio: 6.881635e-03	ci left: 4.794234e-01	ci right 4.827369e-01	k: 168378	n:350000
KS ci ratio: 2.316994e-01	ci left: 7.225153e-04	ci right 9.144763e-04	k: 285	n:350000
PYGO2   350000 perm   107 sec   (3275 perm/sec)   p_kst 8.142857e-04   p_cons 4.810800e-01   p_joint 8.142857e-04

Joint ci ratio: 2.273673e-01	ci left: 7.312445e-04	ci right 9.213831e-04	k: 296	n:360000
Cons ci ratio: 6.784660e-03	ci left: 4.795000e-01	ci right 4.827670e-01	k: 173208	n:360000
KS ci ratio: 2.273673e-01	ci left: 7.312445e-04	ci right 9.213831e-04	k: 296	n:360000
PYGO2   360000 perm   111 sec   (3236 perm/sec)   p_kst 8.222222e-04   p_cons 4.811333e-01   p_joint 8.222222e-04

Joint ci ratio: 2.439631e-01	ci left: 6.122865e-04	ci right 7.848777e-04	k: 257	n:370000
Cons ci ratio: 6.690875e-03	ci left: 4.796321e-01	ci right 4.828547e-01	k: 178060	n:370000
KS ci ratio: 2.247347e-01	ci left: 7.293288e-04	ci right 9.164694e-04	k: 303	n:370000
PYGO2   370000 perm   116 sec   (3198 perm/sec)   p_kst 8.189189e-04   p_cons 4.812432e-01   p_joint 6.945946e-04

Joint ci ratio: 2.398155e-01	ci left: 6.184228e-04	ci right 7.893396e-04	k: 266	n:380000
Cons ci ratio: 6.602266e-03	ci left: 4.796523e-01	ci right 4.828322e-01	k: 182872	n:380000
KS ci ratio: 2.211267e-01	ci left: 7.349826e-04	ci right 9.201342e-04	k: 313	n:380000
PYGO2   380000 perm   120 sec   (3160 perm/sec)   p_kst 8.236842e-04   p_cons 4.812421e-01   p_joint 7.000000e-04

Joint ci ratio: 2.367324e-01	ci left: 6.194431e-04	ci right 7.881183e-04	k: 273	n:390000
Cons ci ratio: 6.519865e-03	ci left: 4.794590e-01	ci right 4.825977e-01	k: 187601	n:390000
KS ci ratio: 2.180240e-01	ci left: 7.379448e-04	ci right 9.208850e-04	k: 322	n:390000
PYGO2   390000 perm   125 sec   (3124 perm/sec)   p_kst 8.256410e-04   p_cons 4.810282e-01   p_joint 7.000000e-04

Joint ci ratio: 2.350240e-01	ci left: 6.133658e-04	ci right 7.790056e-04	k: 277	n:400000
Cons ci ratio: 6.434960e-03	ci left: 4.797030e-01	ci right 4.828023e-01	k: 192501	n:400000
KS ci ratio: 2.166876e-01	ci left: 7.289514e-04	ci right 9.084069e-04	k: 326	n:400000
PYGO2   400000 perm   130 sec   (3089 perm/sec)   p_kst 8.150000e-04   p_cons 4.812525e-01   p_joint 6.925000e-04

Joint ci ratio: 2.305067e-01	ci left: 6.236710e-04	ci right 7.883958e-04	k: 288	n:410000
Cons ci ratio: 6.356266e-03	ci left: 4.797012e-01	ci right 4.827625e-01	k: 197305	n:410000
KS ci ratio: 2.131317e-01	ci left: 7.365578e-04	ci right 9.145213e-04	k: 337	n:410000
PYGO2   410000 perm   134 sec   (3056 perm/sec)   p_kst 8.219512e-04   p_cons 4.812317e-01   p_joint 7.024390e-04

Joint ci ratio: 2.297146e-01	ci left: 6.133087e-04	ci right 7.746610e-04	k: 290	n:420000
Cons ci ratio: 6.277216e-03	ci left: 4.799521e-01	ci right 4.829767e-01	k: 202215	n:420000
KS ci ratio: 2.121935e-01	ci left: 7.257827e-04	ci right 9.002703e-04	k: 340	n:420000
PYGO2   420000 perm   139 sec   (3022 perm/sec)   p_kst 8.095238e-04   p_cons 4.814643e-01   p_joint 6.904762e-04

Joint ci ratio: 2.281527e-01	ci left: 6.078144e-04	ci right 7.664808e-04	k: 294	n:430000
Cons ci ratio: 6.202168e-03	ci left: 4.801009e-01	ci right 4.830901e-01	k: 207086	n:430000
KS ci ratio: 2.103515e-01	ci left: 7.221191e-04	ci right 8.940247e-04	k: 346	n:430000
PYGO2   430000 perm   144 sec   (2989 perm/sec)   p_kst 8.046512e-04   p_cons 4.815953e-01   p_joint 6.837209e-04

Joint ci ratio: 2.254930e-01	ci left: 6.090057e-04	ci right 7.658723e-04	k: 301	n:440000
Cons ci ratio: 6.132763e-03	ci left: 4.799976e-01	ci right 4.829526e-01	k: 211849	n:440000
KS ci ratio: 2.079678e-01	ci left: 7.229369e-04	ci right 8.928387e-04	k: 354	n:440000
PYGO2   440000 perm   149 sec   (2951 perm/sec)   p_kst 8.045455e-04   p_cons 4.814750e-01   p_joint 6.840909e-04

Joint ci ratio: 2.236496e-01	ci left: 6.059582e-04	ci right 7.605881e-04	k: 306	n:450000
Cons ci ratio: 6.065770e-03	ci left: 4.798880e-01	ci right 4.828100e-01	k: 216607	n:450000
KS ci ratio: 2.062328e-01	ci left: 7.195133e-04	ci right 8.870219e-04	k: 360	n:450000
PYGO2   450000 perm   154 sec   (2919 perm/sec)   p_kst 8.000000e-04   p_cons 4.813489e-01   p_joint 6.800000e-04

Joint ci ratio: 2.218508e-01	ci left: 6.030482e-04	ci right 7.555288e-04	k: 311	n:460000
Cons ci ratio: 5.998052e-03	ci left: 4.800225e-01	ci right 4.829125e-01	k: 221475	n:460000
KS ci ratio: 2.048199e-01	ci left: 7.141817e-04	ci right 8.791673e-04	k: 365	n:460000
PYGO2   460000 perm   159 sec   (2888 perm/sec)   p_kst 7.934783e-04   p_cons 4.814674e-01   p_joint 6.760870e-04

Joint ci ratio: 2.211443e-01	ci left: 5.942363e-04	ci right 7.439452e-04	k: 313	n:470000
Cons ci ratio: 5.932907e-03	ci left: 4.801216e-01	ci right 4.829807e-01	k: 226329	n:470000
KS ci ratio: 2.039867e-01	ci left: 7.050423e-04	ci right 8.671713e-04	k: 368	n:470000
PYGO2   470000 perm   165 sec   (2854 perm/sec)   p_kst 7.829787e-04   p_cons 4.815511e-01   p_joint 6.659574e-04

Joint ci ratio: 2.173686e-01	ci left: 6.035150e-04	ci right 7.526190e-04	k: 324	n:480000
Cons ci ratio: 5.871356e-03	ci left: 4.800876e-01	ci right 4.829167e-01	k: 231121	n:480000
KS ci ratio: 2.004846e-01	ci left: 7.160663e-04	ci right 8.775576e-04	k: 381	n:480000
PYGO2   480000 perm   170 sec   (2824 perm/sec)   p_kst 7.937500e-04   p_cons 4.815021e-01   p_joint 6.750000e-04

Joint ci ratio: 2.153897e-01	ci left: 6.027797e-04	ci right 7.501670e-04	k: 330	n:490000
Cons ci ratio: 5.812895e-03	ci left: 4.799511e-01	ci right 4.827511e-01	k: 235862	n:490000
KS ci ratio: 1.984177e-01	ci left: 7.169639e-04	ci right 8.767891e-04	k: 389	n:490000
PYGO2   490000 perm   175 sec   (2795 perm/sec)   p_kst 7.938776e-04   p_cons 4.813510e-01   p_joint 6.734694e-04

Joint ci ratio: 2.122073e-01	ci left: 6.096535e-04	ci right 7.562326e-04	k: 340	n:500000
Cons ci ratio: 5.753332e-03	ci left: 4.800642e-01	ci right 4.828361e-01	k: 240725	n:500000
KS ci ratio: 1.956767e-01	ci left: 7.235395e-04	ci right 8.823369e-04	k: 400	n:500000
PYGO2   500000 perm   181 sec   (2766 perm/sec)   p_kst 8.000000e-04   p_cons 4.814500e-01   p_joint 6.800000e-04

Joint ci ratio: 2.112807e-01	ci left: 6.032697e-04	ci right 7.475986e-04	k: 343	n:510000
Cons ci ratio: 5.699210e-03	ci left: 4.798533e-01	ci right 4.825979e-01	k: 245425	n:510000
KS ci ratio: 1.947088e-01	ci left: 7.168121e-04	ci right 8.732625e-04	k: 404	n:510000
PYGO2   510000 perm   186 sec   (2737 perm/sec)   p_kst 7.921569e-04   p_cons 4.812255e-01   p_joint 6.725490e-04

Joint ci ratio: 2.091633e-01	ci left: 6.044213e-04	ci right 7.473909e-04	k: 350	n:520000
Cons ci ratio: 5.644671e-03	ci left: 4.798200e-01	ci right 4.825379e-01	k: 250213	n:520000
KS ci ratio: 1.928138e-01	ci left: 7.176656e-04	ci right 8.725990e-04	k: 412	n:520000
PYGO2   520000 perm   192 sec   (2710 perm/sec)   p_kst 7.923077e-04   p_cons 4.811788e-01   p_joint 6.730769e-04

Joint ci ratio: 2.068194e-01	ci left: 6.073254e-04	ci right 7.491684e-04	k: 358	n:530000
Cons ci ratio: 5.592028e-03	ci left: 4.797559e-01	ci right 4.824481e-01	k: 254984	n:530000
KS ci ratio: 1.905207e-01	ci left: 7.220875e-04	ci right 8.759069e-04	k: 422	n:530000
PYGO2   530000 perm   197 sec   (2684 perm/sec)   p_kst 7.962264e-04   p_cons 4.811019e-01   p_joint 6.754717e-04

Joint ci ratio: 2.051126e-01	ci left: 6.066167e-04	ci right 7.469784e-04	k: 364	n:540000
Cons ci ratio: 5.540440e-03	ci left: 4.797295e-01	ci right 4.823966e-01	k: 259774	n:540000
KS ci ratio: 1.891840e-01	ci left: 7.192984e-04	ci right 8.713251e-04	k: 428	n:540000
PYGO2   540000 perm   203 sec   (2657 perm/sec)   p_kst 7.925926e-04   p_cons 4.810630e-01   p_joint 6.740741e-04

Joint ci ratio: 2.045539e-01	ci left: 5.990369e-04	ci right 7.372199e-04	k: 366	n:550000
Cons ci ratio: 5.490155e-03	ci left: 4.797133e-01	ci right 4.823560e-01	k: 264569	n:550000
KS ci ratio: 1.887456e-01	ci left: 7.096842e-04	ci right 8.592915e-04	k: 430	n:550000
PYGO2   550000 perm   209 sec   (2631 perm/sec)   p_kst 7.818182e-04   p_cons 4.810345e-01   p_joint 6.654545e-04

Joint ci ratio: 2.029021e-01	ci left: 5.985075e-04	ci right 7.353154e-04	k: 372	n:560000
Cons ci ratio: 5.442848e-03	ci left: 4.795478e-01	ci right 4.821667e-01	k: 269280	n:560000
KS ci ratio: 1.870179e-01	ci left: 7.106252e-04	ci right 8.589038e-04	k: 438	n:560000
PYGO2   560000 perm   215 sec   (2606 perm/sec)   p_kst 7.821429e-04   p_cons 4.808571e-01   p_joint 6.642857e-04

Joint ci ratio: 2.015560e-01	ci left: 5.963350e-04	ci right 7.316308e-04	k: 377	n:570000
Cons ci ratio: 5.395188e-03	ci left: 4.795320e-01	ci right 4.821279e-01	k: 274073	n:570000
KS ci ratio: 1.859623e-01	ci left: 7.065203e-04	ci right 8.530165e-04	k: 443	n:570000
PYGO2   570000 perm   221 sec   (2581 perm/sec)   p_kst 7.771930e-04   p_cons 4.808298e-01   p_joint 6.614035e-04

Joint ci ratio: 2.002363e-01	ci left: 5.942404e-04	ci right 7.280703e-04	k: 382	n:580000
Cons ci ratio: 5.347263e-03	ci left: 4.796565e-01	ci right 4.822299e-01	k: 278947	n:580000
KS ci ratio: 1.847187e-01	ci left: 7.042037e-04	ci right 8.491337e-04	k: 449	n:580000
PYGO2   580000 perm   227 sec   (2557 perm/sec)   p_kst 7.741379e-04   p_cons 4.809431e-01   p_joint 6.586207e-04

Joint ci ratio: 1.991993e-01	ci left: 5.906090e-04	ci right 7.228485e-04	k: 386	n:590000
Cons ci ratio: 5.301113e-03	ci left: 4.797277e-01	ci right 4.822792e-01	k: 283792	n:590000
KS ci ratio: 1.837014e-01	ci left: 7.003517e-04	ci right 8.436067e-04	k: 454	n:590000
PYGO2   590000 perm   233 sec   (2534 perm/sec)   p_kst 7.694915e-04   p_cons 4.810034e-01   p_joint 6.542373e-04

Joint ci ratio: 1.984322e-01	ci left: 5.855165e-04	ci right 7.160498e-04	k: 389	n:600000
Cons ci ratio: 5.256665e-03	ci left: 4.797467e-01	ci right 4.822768e-01	k: 288607	n:600000
KS ci ratio: 1.827007e-01	ci left: 6.966302e-04	ci right 8.382618e-04	k: 459	n:600000
PYGO2   600000 perm   239 sec   (2510 perm/sec)   p_kst 7.650000e-04   p_cons 4.810117e-01   p_joint 6.483333e-04

Joint ci ratio: 1.956909e-01	ci left: 5.930612e-04	ci right 7.232324e-04	k: 400	n:610000
Cons ci ratio: 5.214549e-03	ci left: 4.796471e-01	ci right 4.821564e-01	k: 293350	n:610000
KS ci ratio: 1.801718e-01	ci left: 7.055540e-04	ci right 8.467978e-04	k: 472	n:610000
PYGO2   610000 perm   245 sec   (2488 perm/sec)   p_kst 7.737705e-04   p_cons 4.809016e-01   p_joint 6.557377e-04

Joint ci ratio: 1.923607e-01	ci left: 6.049799e-04	ci right 7.352430e-04	k: 414	n:620000
Cons ci ratio: 5.171557e-03	ci left: 4.797314e-01	ci right 4.822204e-01	k: 298205	n:620000
KS ci ratio: 1.771985e-01	ci left: 7.188268e-04	ci right 8.600986e-04	k: 488	n:620000
PYGO2   620000 perm   251 sec   (2465 perm/sec)   p_kst 7.870968e-04   p_cons 4.809758e-01   p_joint 6.677419e-04

Joint ci ratio: 1.909851e-01	ci left: 6.044438e-04	ci right 7.335528e-04	k: 420	n:630000
Cons ci ratio: 5.130443e-03	ci left: 4.797322e-01	ci right 4.822013e-01	k: 303009	n:630000
KS ci ratio: 1.757665e-01	ci left: 7.195544e-04	ci right 8.597050e-04	k: 496	n:630000
PYGO2   630000 perm   258 sec   (2442 perm/sec)   p_kst 7.873016e-04   p_cons 4.809667e-01   p_joint 6.666667e-04

Joint ci ratio: 1.894168e-01	ci left: 6.054161e-04	ci right 7.335487e-04	k: 427	n:640000
Cons ci ratio: 5.089880e-03	ci left: 4.797737e-01	ci right 4.822234e-01	k: 307839	n:640000
KS ci ratio: 1.743687e-01	ci left: 7.202637e-04	ci right 8.593192e-04	k: 504	n:640000
PYGO2   640000 perm   264 sec   (2420 perm/sec)   p_kst 7.875000e-04   p_cons 4.809984e-01   p_joint 6.671875e-04

Joint ci ratio: 1.876708e-01	ci left: 6.078289e-04	ci right 7.351512e-04	k: 435	n:650000
Cons ci ratio: 5.050264e-03	ci left: 4.798139e-01	ci right 4.822447e-01	k: 312669	n:650000
KS ci ratio: 1.730038e-01	ci left: 7.209554e-04	ci right 8.589411e-04	k: 512	n:650000
PYGO2   650000 perm   271 sec   (2399 perm/sec)   p_kst 7.876923e-04   p_cons 4.810292e-01   p_joint 6.692308e-04

Joint ci ratio: 1.870290e-01	ci left: 6.029515e-04	ci right 7.287711e-04	k: 438	n:660000
Cons ci ratio: 5.012304e-03	ci left: 4.797788e-01	ci right 4.821911e-01	k: 317450	n:660000
KS ci ratio: 1.723337e-01	ci left: 7.158303e-04	ci right 8.522494e-04	k: 516	n:660000
PYGO2   660000 perm   278 sec   (2378 perm/sec)   p_kst 7.818182e-04   p_cons 4.809848e-01   p_joint 6.636364e-04

Joint ci ratio: 1.866051e-01	ci left: 5.967975e-04	ci right 7.210187e-04	k: 440	n:670000
Cons ci ratio: 4.974696e-03	ci left: 4.797940e-01	ci right 4.821882e-01	k: 322264	n:670000
KS ci ratio: 1.720021e-01	ci left: 7.080025e-04	ci right 8.426431e-04	k: 518	n:670000
PYGO2   670000 perm   284 sec   (2359 perm/sec)   p_kst 7.731343e-04   p_cons 4.809910e-01   p_joint 6.567164e-04

Joint ci ratio: 2.255204e-01	ci left: 3.940574e-04	ci right 4.955716e-04	k: 301	n:680000
Cons ci ratio: 4.936803e-03	ci left: 4.799221e-01	ci right 4.822987e-01	k: 327155	n:680000
KS ci ratio: 1.706916e-01	ci left: 7.088509e-04	ci right 8.425201e-04	k: 526	n:680000
PYGO2   680000 perm   291 sec   (2339 perm/sec)   p_kst 7.735294e-04   p_cons 4.811103e-01   p_joint 4.426471e-04

Joint ci ratio: 2.236763e-01	ci left: 3.951852e-04	ci right 4.960427e-04	k: 306	n:690000
Cons ci ratio: 4.900872e-03	ci left: 4.799335e-01	ci right 4.822928e-01	k: 331968	n:690000
KS ci ratio: 1.690945e-01	ci left: 7.124543e-04	ci right 8.454179e-04	k: 536	n:690000
PYGO2   690000 perm   298 sec   (2319 perm/sec)   p_kst 7.768116e-04   p_cons 4.811130e-01   p_joint 4.434783e-04

Joint ci ratio: 2.236770e-01	ci left: 3.895395e-04	ci right 4.889566e-04	k: 306	n:700000
Cons ci ratio: 4.864656e-03	ci left: 4.800532e-01	ci right 4.823956e-01	k: 336857	n:700000
KS ci ratio: 1.686247e-01	ci left: 7.063808e-04	ci right 8.378074e-04	k: 539	n:700000
PYGO2   700000 perm   304 sec   (2300 perm/sec)   p_kst 7.700000e-04   p_cons 4.812243e-01   p_joint 4.371429e-04

Joint ci ratio: 2.211693e-01	ci left: 3.933631e-04	ci right 4.924773e-04	k: 313	n:710000
Cons ci ratio: 4.830484e-03	ci left: 4.800400e-01	ci right 4.823658e-01	k: 341654	n:710000
KS ci ratio: 1.669327e-01	ci left: 7.112743e-04	ci right 8.421500e-04	k: 550	n:710000
PYGO2   710000 perm   311 sec   (2281 perm/sec)   p_kst 7.746479e-04   p_cons 4.812028e-01   p_joint 4.408451e-04

Joint ci ratio: 2.190858e-01	ci left: 3.957736e-04	ci right 4.944293e-04	k: 319	n:720000
Cons ci ratio: 4.796342e-03	ci left: 4.800981e-01	ci right 4.824077e-01	k: 346502	n:720000
KS ci ratio: 1.644145e-01	ci left: 7.240281e-04	ci right 8.550422e-04	k: 567	n:720000
PYGO2   720000 perm   318 sec   (2262 perm/sec)   p_kst 7.875000e-04   p_cons 4.812528e-01   p_joint 4.430556e-04

Joint ci ratio: 2.180662e-01	ci left: 3.942367e-04	ci right 4.919906e-04	k: 322	n:730000
Cons ci ratio: 4.762522e-03	ci left: 4.801957e-01	ci right 4.824894e-01	k: 351380	n:730000
KS ci ratio: 1.635532e-01	ci left: 7.219917e-04	ci right 8.518855e-04	k: 573	n:730000
PYGO2   730000 perm   325 sec   (2244 perm/sec)   p_kst 7.849315e-04   p_cons 4.813425e-01   p_joint 4.410959e-04

Joint ci ratio: 2.173946e-01	ci left: 3.914644e-04	ci right 4.881920e-04	k: 324	n:740000
Cons ci ratio: 4.730008e-03	ci left: 4.802272e-01	ci right 4.825054e-01	k: 356211	n:740000
KS ci ratio: 1.624252e-01	ci left: 7.226050e-04	ci right 8.516249e-04	k: 581	n:740000
PYGO2   740000 perm   332 sec   (2226 perm/sec)   p_kst 7.851351e-04   p_cons 4.813662e-01   p_joint 4.378378e-04

Joint ci ratio: 2.170614e-01	ci left: 3.875056e-04	ci right 4.830886e-04	k: 325	n:750000
Cons ci ratio: 4.699469e-03	ci left: 4.801180e-01	ci right 4.823809e-01	k: 360937	n:750000
KS ci ratio: 1.617323e-01	ci left: 7.193664e-04	ci right 8.472069e-04	k: 586	n:750000
PYGO2   750000 perm   340 sec   (2208 perm/sec)   p_kst 7.813333e-04   p_cons 4.812493e-01   p_joint 4.333333e-04

Joint ci ratio: 2.150908e-01	ci left: 3.898744e-04	ci right 4.850535e-04	k: 331	n:760000
Cons ci ratio: 4.667828e-03	ci left: 4.801919e-01	ci right 4.824398e-01	k: 365800	n:760000
KS ci ratio: 1.605064e-01	ci left: 7.212657e-04	ci right 8.483785e-04	k: 595	n:760000
PYGO2   760000 perm   347 sec   (2191 perm/sec)   p_kst 7.828947e-04   p_cons 4.813158e-01   p_joint 4.355263e-04

Joint ci ratio: 2.128582e-01	ci left: 3.934149e-04	ci right 4.883313e-04	k: 338	n:770000
Cons ci ratio: 4.637155e-03	ci left: 4.802276e-01	ci right 4.824609e-01	k: 370635	n:770000
KS ci ratio: 1.590451e-01	ci left: 7.256133e-04	ci right 8.522169e-04	k: 606	n:770000
PYGO2   770000 perm   354 sec   (2174 perm/sec)   p_kst 7.870130e-04   p_cons 4.813442e-01   p_joint 4.389610e-04

Joint ci ratio: 2.125454e-01	ci left: 3.895848e-04	ci right 4.834210e-04	k: 339	n:780000
Cons ci ratio: 4.607445e-03	ci left: 4.802226e-01	ci right 4.824416e-01	k: 375439	n:780000
KS ci ratio: 1.583943e-01	ci left: 7.224661e-04	ci right 8.479558e-04	k: 611	n:780000
PYGO2   780000 perm   362 sec   (2157 perm/sec)   p_kst 7.833333e-04   p_cons 4.813321e-01   p_joint 4.346154e-04

Joint ci ratio: 2.106942e-01	ci left: 3.918459e-04	ci right 4.852985e-04	k: 345	n:790000
Cons ci ratio: 4.577731e-03	ci left: 4.802799e-01	ci right 4.824848e-01	k: 380292	n:790000
KS ci ratio: 1.573691e-01	ci left: 7.230475e-04	ci right 8.477485e-04	k: 619	n:790000
PYGO2   790000 perm   369 sec   (2140 perm/sec)   p_kst 7.835443e-04   p_cons 4.813823e-01   p_joint 4.367089e-04

Joint ci ratio: 2.094868e-01	ci left: 3.916847e-04	ci right 4.844950e-04	k: 349	n:800000
Cons ci ratio: 4.549028e-03	ci left: 4.802871e-01	ci right 4.824781e-01	k: 385106	n:800000
KS ci ratio: 1.566133e-01	ci left: 7.212147e-04	ci right 8.449461e-04	k: 625	n:800000
PYGO2   800000 perm   377 sec   (2123 perm/sec)   p_kst 7.812500e-04   p_cons 4.813825e-01   p_joint 4.362500e-04

Joint ci ratio: 2.085950e-01	ci left: 3.903589e-04	ci right 4.824109e-04	k: 352	n:810000
Cons ci ratio: 4.520736e-03	ci left: 4.803076e-01	ci right 4.824851e-01	k: 389931	n:810000
KS ci ratio: 1.558683e-01	ci left: 7.194286e-04	ci right 8.422116e-04	k: 631	n:810000
PYGO2   810000 perm   384 sec   (2107 perm/sec)   p_kst 7.790123e-04   p_cons 4.813963e-01   p_joint 4.345679e-04

Joint ci ratio: 2.077144e-01	ci left: 3.890663e-04	ci right 4.803769e-04	k: 355	n:820000
Cons ci ratio: 4.493009e-03	ci left: 4.803229e-01	ci right 4.824870e-01	k: 394752	n:820000
KS ci ratio: 1.548910e-01	ci left: 7.200319e-04	ci right 8.420758e-04	k: 639	n:820000
PYGO2   820000 perm   392 sec   (2091 perm/sec)   p_kst 7.792683e-04   p_cons 4.814049e-01   p_joint 4.329268e-04

Joint ci ratio: 2.068448e-01	ci left: 3.878055e-04	ci right 4.783910e-04	k: 358	n:830000
Cons ci ratio: 4.465559e-03	ci left: 4.803631e-01	ci right 4.825141e-01	k: 399594	n:830000
KS ci ratio: 1.542898e-01	ci left: 7.171478e-04	ci right 8.381874e-04	k: 644	n:830000
PYGO2   830000 perm   400 sec   (2075 perm/sec)   p_kst 7.759036e-04   p_cons 4.814386e-01   p_joint 4.313253e-04

Joint ci ratio: 2.057021e-01	ci left: 3.877048e-04	ci right 4.777034e-04	k: 362	n:840000
Cons ci ratio: 4.438692e-03	ci left: 4.803929e-01	ci right 4.825311e-01	k: 404428	n:840000
KS ci ratio: 1.533417e-01	ci left: 7.177676e-04	ci right 8.380990e-04	k: 652	n:840000
PYGO2   840000 perm   408 sec   (2059 perm/sec)   p_kst 7.761905e-04   p_cons 4.814619e-01   p_joint 4.309524e-04

Joint ci ratio: 2.040226e-01	ci left: 3.898403e-04	ci right 4.795038e-04	k: 368	n:850000
Cons ci ratio: 4.412948e-03	ci left: 4.803490e-01	ci right 4.824746e-01	k: 409200	n:850000
KS ci ratio: 1.521807e-01	ci left: 7.206383e-04	ci right 8.404530e-04	k: 662	n:850000
PYGO2   850000 perm   416 sec   (2044 perm/sec)   p_kst 7.788235e-04   p_cons 4.814118e-01   p_joint 4.329412e-04

Joint ci ratio: 2.029258e-01	ci left: 3.897215e-04	ci right 4.788160e-04	k: 372	n:860000
Cons ci ratio: 4.386502e-03	ci left: 4.804365e-01	ci right 4.825497e-01	k: 414084	n:860000
KS ci ratio: 1.514969e-01	ci left: 7.189704e-04	ci right 8.379220e-04	k: 668	n:860000
PYGO2   860000 perm   424 sec   (2029 perm/sec)   p_kst 7.767442e-04   p_cons 4.814930e-01   p_joint 4.325581e-04

Joint ci ratio: 2.007836e-01	ci left: 3.939726e-04	ci right 4.829718e-04	k: 380	n:870000
Cons ci ratio: 4.361470e-03	ci left: 4.804139e-01	ci right 4.825149e-01	k: 418874	n:870000
KS ci ratio: 1.501558e-01	ci left: 7.239791e-04	ci right 8.426038e-04	k: 680	n:870000
PYGO2   870000 perm   432 sec   (2014 perm/sec)   p_kst 7.816092e-04   p_cons 4.814644e-01   p_joint 4.367816e-04

Joint ci ratio: 1.999979e-01	ci left: 3.927337e-04	ci right 4.810634e-04	k: 383	n:880000
Cons ci ratio: 4.335924e-03	ci left: 4.804999e-01	ci right 4.825889e-01	k: 423759	n:880000
KS ci ratio: 1.496079e-01	ci left: 7.212207e-04	ci right 8.389236e-04	k: 685	n:880000
PYGO2   880000 perm   440 sec   (1999 perm/sec)   p_kst 7.784091e-04   p_cons 4.815443e-01   p_joint 4.352273e-04

Joint ci ratio: 1.992214e-01	ci left: 3.915233e-04	ci right 4.791973e-04	k: 386	n:890000
Cons ci ratio: 4.311190e-03	ci left: 4.805412e-01	ci right 4.826185e-01	k: 428606	n:890000
KS ci ratio: 1.489580e-01	ci left: 7.196068e-04	ci right 8.364907e-04	k: 691	n:890000
PYGO2   890000 perm   449 sec   (1984 perm/sec)   p_kst 7.764045e-04   p_cons 4.815798e-01   p_joint 4.337079e-04

Joint ci ratio: 1.974434e-01	ci left: 3.945646e-04	ci right 4.820363e-04	k: 393	n:900000
Cons ci ratio: 4.287008e-03	ci left: 4.805661e-01	ci right 4.826318e-01	k: 433439	n:900000
KS ci ratio: 1.477878e-01	ci left: 7.233798e-04	ci right 8.398719e-04	k: 702	n:900000
PYGO2   900000 perm   457 sec   (1969 perm/sec)   p_kst 7.800000e-04   p_cons 4.815989e-01   p_joint 4.366667e-04

Joint ci ratio: 1.966961e-01	ci left: 3.933628e-04	ci right 4.801984e-04	k: 396	n:910000
Cons ci ratio: 4.263228e-03	ci left: 4.805905e-01	ci right 4.826448e-01	k: 438272	n:910000
KS ci ratio: 1.466447e-01	ci left: 7.270733e-04	ci right 8.431753e-04	k: 713	n:910000
PYGO2   910000 perm   466 sec   (1954 perm/sec)   p_kst 7.835165e-04   p_cons 4.816176e-01   p_joint 4.351648e-04

Joint ci ratio: 1.957127e-01	ci left: 3.932213e-04	ci right 4.795400e-04	k: 400	n:920000
Cons ci ratio: 4.240578e-03	ci left: 4.805274e-01	ci right 4.825705e-01	k: 443025	n:920000
KS ci ratio: 1.457290e-01	ci left: 7.285952e-04	ci right 8.441504e-04	k: 722	n:920000
PYGO2   920000 perm   474 sec   (1941 perm/sec)   p_kst 7.847826e-04   p_cons 4.815489e-01   p_joint 4.347826e-04

Joint ci ratio: 1.947438e-01	ci left: 3.930840e-04	ci right 4.788947e-04	k: 404	n:930000
Cons ci ratio: 4.217623e-03	ci left: 4.805442e-01	ci right 4.825763e-01	k: 447851	n:930000
KS ci ratio: 1.448303e-01	ci left: 7.300865e-04	ci right 8.451024e-04	k: 731	n:930000
PYGO2   930000 perm   483 sec   (1926 perm/sec)   p_kst 7.860215e-04   p_cons 4.815602e-01   p_joint 4.344086e-04

Joint ci ratio: 1.935527e-01	ci left: 3.939629e-04	ci right 4.793774e-04	k: 409	n:940000
Cons ci ratio: 4.194526e-03	ci left: 4.806213e-01	ci right 4.826426e-01	k: 452734	n:940000
KS ci ratio: 1.439480e-01	ci left: 7.315483e-04	ci right 8.460321e-04	k: 740	n:940000
PYGO2   940000 perm   491 sec   (1913 perm/sec)   p_kst 7.872340e-04   p_cons 4.816319e-01   p_joint 4.351064e-04

Joint ci ratio: 1.930826e-01	ci left: 3.918192e-04	ci right 4.765384e-04	k: 411	n:950000
Cons ci ratio: 4.172289e-03	ci left: 4.806390e-01	ci right 4.826496e-01	k: 457562	n:950000
KS ci ratio: 1.434650e-01	ci left: 7.289216e-04	ci right 8.425788e-04	k: 745	n:950000
PYGO2   950000 perm   500 sec   (1899 perm/sec)   p_kst 7.842105e-04   p_cons 4.816442e-01   p_joint 4.326316e-04

Joint ci ratio: 1.921521e-01	ci left: 3.917035e-04	ci right 4.759418e-04	k: 415	n:960000
Cons ci ratio: 4.149951e-03	ci left: 4.807104e-01	ci right 4.827105e-01	k: 462442	n:960000
KS ci ratio: 1.429868e-01	ci left: 7.263503e-04	ci right 8.391969e-04	k: 750	n:960000
PYGO2   960000 perm   509 sec   (1886 perm/sec)   p_kst 7.812500e-04   p_cons 4.817104e-01   p_joint 4.322917e-04

Joint ci ratio: 1.898828e-01	ci left: 3.974817e-04	ci right 4.818368e-04	k: 425	n:970000
Cons ci ratio: 4.127840e-03	ci left: 4.807959e-01	ci right 4.827857e-01	k: 467337	n:970000
KS ci ratio: 1.420441e-01	ci left: 7.288039e-04	ci right 8.412219e-04	k: 760	n:970000
PYGO2   970000 perm   518 sec   (1873 perm/sec)   p_kst 7.835052e-04   p_cons 4.817907e-01   p_joint 4.381443e-04

Joint ci ratio: 1.889976e-01	ci left: 3.973139e-04	ci right 4.811950e-04	k: 429	n:980000
Cons ci ratio: 4.107329e-03	ci left: 4.807276e-01	ci right 4.827072e-01	k: 472083	n:980000
KS ci ratio: 1.413033e-01	ci left: 7.292411e-04	ci right 8.410905e-04	k: 768	n:980000
PYGO2   980000 perm   527 sec   (1860 perm/sec)   p_kst 7.836735e-04   p_cons 4.817173e-01   p_joint 4.377551e-04

Joint ci ratio: 1.883419e-01	ci left: 3.961877e-04	ci right 4.795078e-04	k: 432	n:990000
Cons ci ratio: 4.086724e-03	ci left: 4.807092e-01	ci right 4.826788e-01	k: 476877	n:990000
KS ci ratio: 1.410288e-01	ci left: 7.247982e-04	ci right 8.357320e-04	k: 771	n:990000
PYGO2   990000 perm   536 sec   (1848 perm/sec)   p_kst 7.787879e-04   p_cons 4.816939e-01   p_joint 4.363636e-04

Joint ci ratio: 1.872637e-01	ci left: 3.969908e-04	ci right 4.799475e-04	k: 437	n:1000000
Cons ci ratio: 4.066793e-03	ci left: 4.806462e-01	ci right 4.826059e-01	k: 481626	n:1000000
KS ci ratio: 1.403037e-01	ci left: 7.252686e-04	ci right 8.356560e-04	k: 779	n:1000000
PYGO2   1000000 perm   545 sec   (1835 perm/sec)   p_kst 7.790000e-04   p_cons 4.816260e-01   p_joint 4.370000e-04

Joint ci ratio: 1.866258e-01	ci left: 3.958915e-04	ci right 4.783047e-04	k: 440	n:1010000
Cons ci ratio: 4.046066e-03	ci left: 4.807182e-01	ci right 4.826681e-01	k: 486510	n:1010000
KS ci ratio: 1.397673e-01	ci left: 7.238202e-04	ci right 8.335309e-04	k: 785	n:1010000
PYGO2   1010000 perm   554 sec   (1823 perm/sec)   p_kst 7.772277e-04   p_cons 4.816931e-01   p_joint 4.356436e-04

Joint ci ratio: 1.847497e-01	ci left: 4.004237e-04	ci right 4.828485e-04	k: 449	n:1020000
Cons ci ratio: 4.026294e-03	ci left: 4.807093e-01	ci right 4.826496e-01	k: 491313	n:1020000
KS ci ratio: 1.387992e-01	ci left: 7.271325e-04	ci right 8.365188e-04	k: 796	n:1020000
PYGO2   1020000 perm   563 sec   (1811 perm/sec)   p_kst 7.803922e-04   p_cons 4.816794e-01   p_joint 4.401961e-04

Joint ci ratio: 1.845451e-01	ci left: 3.974620e-04	ci right 4.791765e-04	k: 450	n:1030000
Cons ci ratio: 4.006388e-03	ci left: 4.807531e-01	ci right 4.826839e-01	k: 496170	n:1030000
KS ci ratio: 1.384525e-01	ci left: 7.238217e-04	ci right 8.324154e-04	k: 800	n:1030000
PYGO2   1030000 perm   573 sec   (1799 perm/sec)   p_kst 7.766990e-04   p_cons 4.817184e-01   p_joint 4.368932e-04

Joint ci ratio: 1.839345e-01	ci left: 3.963918e-04	ci right 4.775865e-04	k: 453	n:1040000
Cons ci ratio: 3.987089e-03	ci left: 4.807566e-01	ci right 4.826781e-01	k: 500986	n:1040000
KS ci ratio: 1.379369e-01	ci left: 7.224316e-04	ci right 8.303800e-04	k: 806	n:1040000
PYGO2   1040000 perm   582 sec   (1787 perm/sec)   p_kst 7.750000e-04   p_cons 4.817173e-01   p_joint 4.355769e-04

Joint ci ratio: 1.837325e-01	ci left: 3.935252e-04	ci right 4.740343e-04	k: 454	n:1050000
Cons ci ratio: 3.967983e-03	ci left: 4.807705e-01	ci right 4.826829e-01	k: 505813	n:1050000
KS ci ratio: 1.373426e-01	ci left: 7.219884e-04	ci right 8.293678e-04	k: 813	n:1050000
PYGO2   1050000 perm   592 sec   (1775 perm/sec)   p_kst 7.742857e-04   p_cons 4.817267e-01   p_joint 4.323810e-04

Joint ci ratio: 1.823351e-01	ci left: 3.961139e-04	ci right 4.764682e-04	k: 461	n:1060000
Cons ci ratio: 3.949179e-03	ci left: 4.807804e-01	ci right 4.826838e-01	k: 510636	n:1060000
KS ci ratio: 1.363410e-01	ci left: 7.261105e-04	ci right 8.332515e-04	k: 825	n:1060000
PYGO2   1060000 perm   601 sec   (1763 perm/sec)   p_kst 7.783019e-04   p_cons 4.817321e-01   p_joint 4.349057e-04

Joint ci ratio: 1.813563e-01	ci left: 3.968721e-04	ci right 4.769006e-04	k: 466	n:1070000
Cons ci ratio: 3.930662e-03	ci left: 4.807874e-01	ci right 4.826818e-01	k: 515456	n:1070000
KS ci ratio: 1.356042e-01	ci left: 7.274495e-04	ci right 8.341612e-04	k: 834	n:1070000
PYGO2   1070000 perm   611 sec   (1751 perm/sec)   p_kst 7.794393e-04   p_cons 4.817346e-01   p_joint 4.355140e-04

Joint ci ratio: 1.807767e-01	ci left: 3.958492e-04	ci right 4.753884e-04	k: 469	n:1080000
Cons ci ratio: 3.912237e-03	ci left: 4.808156e-01	ci right 4.827012e-01	k: 520299	n:1080000
KS ci ratio: 1.350394e-01	ci left: 7.269759e-04	ci right 8.331383e-04	k: 841	n:1080000
PYGO2   1080000 perm   621 sec   (1740 perm/sec)   p_kst 7.787037e-04   p_cons 4.817583e-01   p_joint 4.342593e-04

Joint ci ratio: 1.796336e-01	ci left: 3.974739e-04	ci right 4.767797e-04	k: 475	n:1090000
Cons ci ratio: 3.894175e-03	ci left: 4.808295e-01	ci right 4.827064e-01	k: 525127	n:1090000
KS ci ratio: 1.340870e-01	ci left: 7.309451e-04	ci right 8.368743e-04	k: 853	n:1090000
PYGO2   1090000 perm   630 sec   (1729 perm/sec)   p_kst 7.825688e-04   p_cons 4.817679e-01   p_joint 4.357798e-04

Joint ci ratio: 1.777754e-01	ci left: 4.025449e-04	ci right 4.819423e-04	k: 485	n:1100000
Cons ci ratio: 3.876579e-03	ci left: 4.808149e-01	ci right 4.826833e-01	k: 529924	n:1100000
KS ci ratio: 1.331545e-01	ci left: 7.348447e-04	ci right 8.405398e-04	k: 865	n:1100000
PYGO2   1100000 perm   640 sec   (1718 perm/sec)   p_kst 7.863636e-04   p_cons 4.817491e-01   p_joint 4.409091e-04

Joint ci ratio: 1.765086e-01	ci left: 4.049451e-04	ci right 4.841861e-04	k: 492	n:1110000
Cons ci ratio: 3.858615e-03	ci left: 4.808791e-01	ci right 4.827390e-01	k: 534808	n:1110000
KS ci ratio: 1.320157e-01	ci left: 7.412899e-04	ci right 8.469286e-04	k: 880	n:1110000
PYGO2   1110000 perm   650 sec   (1708 perm/sec)   p_kst 7.927928e-04   p_cons 4.818090e-01   p_joint 4.432432e-04

Joint ci ratio: 1.761519e-01	ci left: 4.030364e-04	ci right 4.817275e-04	k: 494	n:1120000
Cons ci ratio: 3.841701e-03	ci left: 4.808376e-01	ci right 4.826893e-01	k: 539575	n:1120000
KS ci ratio: 1.316428e-01	ci left: 7.389882e-04	ci right 8.439783e-04	k: 885	n:1120000
PYGO2   1120000 perm   660 sec   (1697 perm/sec)   p_kst 7.901786e-04   p_cons 4.817634e-01   p_joint 4.410714e-04

Joint ci ratio: 1.756206e-01	ci left: 4.020077e-04	ci right 4.802360e-04	k: 497	n:1130000
Cons ci ratio: 3.824310e-03	ci left: 4.808881e-01	ci right 4.827315e-01	k: 544445	n:1130000
KS ci ratio: 1.311259e-01	ci left: 7.384396e-04	ci right 8.429076e-04	k: 892	n:1130000
PYGO2   1130000 perm   670 sec   (1687 perm/sec)   p_kst 7.893805e-04   p_cons 4.818097e-01   p_joint 4.398230e-04

Joint ci ratio: 1.749196e-01	ci left: 4.018361e-04	ci right 4.796860e-04	k: 501	n:1140000
Cons ci ratio: 3.807500e-03	ci left: 4.808920e-01	ci right 4.827274e-01	k: 549263	n:1140000
KS ci ratio: 1.306150e-01	ci left: 7.379013e-04	ci right 8.418550e-04	k: 899	n:1140000
PYGO2   1140000 perm   680 sec   (1677 perm/sec)   p_kst 7.885965e-04   p_cons 4.818096e-01   p_joint 4.394737e-04

Joint ci ratio: 1.737124e-01	ci left: 4.041633e-04	ci right 4.818670e-04	k: 508	n:1150000
Cons ci ratio: 3.790587e-03	ci left: 4.809386e-01	ci right 4.827659e-01	k: 554130	n:1150000
KS ci ratio: 1.297526e-01	ci left: 7.415799e-04	ci right 8.453088e-04	k: 911	n:1150000
PYGO2   1150000 perm   690 sec   (1667 perm/sec)   p_kst 7.921739e-04   p_cons 4.818522e-01   p_joint 4.417391e-04

Joint ci ratio: 1.730339e-01	ci left: 4.039778e-04	ci right 4.813108e-04	k: 512	n:1160000
Cons ci ratio: 3.774014e-03	ci left: 4.809688e-01	ci right 4.827882e-01	k: 558979	n:1160000
KS ci ratio: 1.291873e-01	ci left: 7.418601e-04	ci right 8.451415e-04	k: 919	n:1160000
PYGO2   1160000 perm   700 sec   (1657 perm/sec)   p_kst 7.922414e-04   p_cons 4.818784e-01   p_joint 4.413793e-04

Joint ci ratio: 1.718651e-01	ci left: 4.062497e-04	ci right 4.834378e-04	k: 519	n:1170000
Cons ci ratio: 3.758551e-03	ci left: 4.808797e-01	ci right 4.826913e-01	k: 563689	n:1170000
KS ci ratio: 1.283527e-01	ci left: 7.454455e-04	ci right 8.485046e-04	k: 931	n:1170000
PYGO2   1170000 perm   711 sec   (1646 perm/sec)   p_kst 7.957265e-04   p_cons 4.817855e-01   p_joint 4.435897e-04

Joint ci ratio: 1.710447e-01	ci left: 4.068624e-04	ci right 4.837598e-04	k: 524	n:1180000
Cons ci ratio: 3.742718e-03	ci left: 4.808667e-01	ci right 4.826707e-01	k: 568487	n:1180000
KS ci ratio: 1.272645e-01	ci left: 7.522542e-04	ci right 8.553063e-04	k: 947	n:1180000
PYGO2   1180000 perm   721 sec   (1637 perm/sec)   p_kst 8.025424e-04   p_cons 4.817686e-01   p_joint 4.440678e-04

Joint ci ratio: 1.708823e-01	ci left: 4.042477e-04	ci right 4.805709e-04	k: 525	n:1190000
Cons ci ratio: 3.726938e-03	ci left: 4.808733e-01	ci right 4.826696e-01	k: 573308	n:1190000
KS ci ratio: 1.270639e-01	ci left: 7.483734e-04	ci right 8.507201e-04	k: 950	n:1190000
PYGO2   1190000 perm   731 sec   (1627 perm/sec)   p_kst 7.983193e-04   p_cons 4.817714e-01   p_joint 4.411765e-04

Joint ci ratio: 1.699158e-01	ci left: 4.056658e-04	ci right 4.817792e-04	k: 531	n:1200000
Cons ci ratio: 3.711548e-03	ci left: 4.808540e-01	ci right 4.826428e-01	k: 578098	n:1200000
KS ci ratio: 1.265988e-01	ci left: 7.477852e-04	ci right 8.496491e-04	k: 957	n:1200000
PYGO2   1200000 perm   742 sec   (1617 perm/sec)   p_kst 7.975000e-04   p_cons 4.817483e-01   p_joint 4.425000e-04

Joint ci ratio: 1.692806e-01	ci left: 4.054786e-04	ci right 4.812435e-04	k: 535	n:1210000
Cons ci ratio: 3.696097e-03	ci left: 4.808688e-01	ci right 4.826503e-01	k: 582929	n:1210000
KS ci ratio: 1.261389e-01	ci left: 7.472074e-04	ci right 8.485951e-04	k: 964	n:1210000
PYGO2   1210000 perm   752 sec   (1608 perm/sec)   p_kst 7.966942e-04   p_cons 4.817595e-01   p_joint 4.421488e-04

Joint ci ratio: 1.686525e-01	ci left: 4.052951e-04	ci right 4.807161e-04	k: 539	n:1220000
Cons ci ratio: 3.680680e-03	ci left: 4.809048e-01	ci right 4.826789e-01	k: 587786	n:1220000
KS ci ratio: 1.257487e-01	ci left: 7.458458e-04	ci right 8.467124e-04	k: 970	n:1220000
PYGO2   1220000 perm   763 sec   (1599 perm/sec)   p_kst 7.950820e-04   p_cons 4.817918e-01   p_joint 4.418033e-04

Joint ci ratio: 1.684968e-01	ci left: 4.027787e-04	ci right 4.776552e-04	k: 540	n:1230000
Cons ci ratio: 3.665484e-03	ci left: 4.809361e-01	ci right 4.827030e-01	k: 592638	n:1230000
KS ci ratio: 1.251060e-01	ci left: 7.476571e-04	ci right 8.482135e-04	k: 980	n:1230000
PYGO2   1230000 perm   774 sec   (1590 perm/sec)   p_kst 7.967480e-04   p_cons 4.818195e-01   p_joint 4.390244e-04

Joint ci ratio: 1.678774e-01	ci left: 4.026205e-04	ci right 4.771646e-04	k: 544	n:1240000
Cons ci ratio: 3.650769e-03	ci left: 4.809266e-01	ci right 4.826864e-01	k: 597440	n:1240000
KS ci ratio: 1.245360e-01	ci left: 7.486591e-04	ci right 8.488576e-04	k: 989	n:1240000
PYGO2   1240000 perm   785 sec   (1580 perm/sec)   p_kst 7.975806e-04   p_cons 4.818065e-01   p_joint 4.387097e-04

Joint ci ratio: 1.674173e-01	ci left: 4.016988e-04	ci right 4.758479e-04	k: 547	n:1250000
Cons ci ratio: 3.636574e-03	ci left: 4.808701e-01	ci right 4.826228e-01	k: 602183	n:1250000
KS ci ratio: 1.241604e-01	ci left: 7.473204e-04	ci right 8.470160e-04	k: 995	n:1250000
PYGO2   1250000 perm   796 sec   (1571 perm/sec)   p_kst 7.960000e-04   p_cons 4.817464e-01   p_joint 4.376000e-04

Joint ci ratio: 1.668097e-01	ci left: 4.015525e-04	ci right 4.753786e-04	k: 551	n:1260000
Cons ci ratio: 3.621927e-03	ci left: 4.808994e-01	ci right 4.826451e-01	k: 607033	n:1260000
KS ci ratio: 1.236032e-01	ci left: 7.483109e-04	ci right 8.476577e-04	k: 1004	n:1260000
PYGO2   1260000 perm   807 sec   (1562 perm/sec)   p_kst 7.968254e-04   p_cons 4.817722e-01   p_joint 4.373016e-04

Joint ci ratio: 1.660592e-01	ci left: 4.021637e-04	ci right 4.757363e-04	k: 556	n:1270000
Cons ci ratio: 3.607911e-03	ci left: 4.808653e-01	ci right 4.826041e-01	k: 611803	n:1270000
KS ci ratio: 1.232359e-01	ci left: 7.469972e-04	ci right 8.458535e-04	k: 1010	n:1270000
PYGO2   1270000 perm   818 sec   (1553 perm/sec)   p_kst 7.952756e-04   p_cons 4.817346e-01   p_joint 4.377953e-04

Joint ci ratio: 1.647334e-01	ci left: 4.057621e-04	ci right 4.793416e-04	k: 565	n:1280000
Cons ci ratio: 3.594270e-03	ci left: 4.808020e-01	ci right 4.825340e-01	k: 616535	n:1280000
KS ci ratio: 1.224509e-01	ci left: 7.510055e-04	ci right 8.497133e-04	k: 1023	n:1280000
PYGO2   1280000 perm   829 sec   (1544 perm/sec)   p_kst 7.992188e-04   p_cons 4.816680e-01   p_joint 4.414063e-04

Joint ci ratio: 1.640105e-01	ci left: 4.063332e-04	ci right 4.796610e-04	k: 570	n:1290000
Cons ci ratio: 3.580415e-03	ci left: 4.807909e-01	ci right 4.825162e-01	k: 621333	n:1290000
KS ci ratio: 1.219163e-01	ci left: 7.519473e-04	ci right 8.503163e-04	k: 1032	n:1290000
PYGO2   1290000 perm   840 sec   (1536 perm/sec)   p_kst 8.000000e-04   p_cons 4.816535e-01   p_joint 4.418605e-04

Joint ci ratio: 1.630142e-01	ci left: 4.083719e-04	ci right 4.815760e-04	k: 577	n:1300000
Cons ci ratio: 3.566231e-03	ci left: 4.808484e-01	ci right 4.825670e-01	k: 626220	n:1300000
KS ci ratio: 1.212722e-01	ci left: 7.543673e-04	ci right 8.524941e-04	k: 1043	n:1300000
PYGO2   1300000 perm   851 sec   (1527 perm/sec)   p_kst 8.023077e-04   p_cons 4.817077e-01   p_joint 4.438462e-04

Joint ci ratio: 1.624531e-01	ci left: 4.081836e-04	ci right 4.810775e-04	k: 581	n:1310000
Cons ci ratio: 3.552648e-03	ci left: 4.808440e-01	ci right 4.825561e-01	k: 631027	n:1310000
KS ci ratio: 1.207528e-01	ci left: 7.552711e-04	ci right 8.530646e-04	k: 1052	n:1310000
PYGO2   1310000 perm   863 sec   (1518 perm/sec)   p_kst 8.030534e-04   p_cons 4.817000e-01   p_joint 4.435115e-04

Joint ci ratio: 1.617597e-01	ci left: 4.087256e-04	ci right 4.813744e-04	k: 586	n:1320000
Cons ci ratio: 3.539541e-03	ci left: 4.807942e-01	ci right 4.824998e-01	k: 635774	n:1320000
KS ci ratio: 1.201268e-01	ci left: 7.576317e-04	ci right 8.551862e-04	k: 1063	n:1320000
PYGO2   1320000 perm   874 sec   (1510 perm/sec)   p_kst 8.053030e-04   p_cons 4.816470e-01   p_joint 4.439394e-04

Joint ci ratio: 1.614850e-01	ci left: 4.070953e-04	ci right 4.793196e-04	k: 588	n:1330000
Cons ci ratio: 3.525819e-03	ci left: 4.808527e-01	ci right 4.825519e-01	k: 640664	n:1330000
KS ci ratio: 1.197896e-01	ci left: 7.563111e-04	ci right 8.534028e-04	k: 1069	n:1330000
PYGO2   1330000 perm   886 sec   (1501 perm/sec)   p_kst 8.037594e-04   p_cons 4.817023e-01   p_joint 4.421053e-04

Joint ci ratio: 1.614852e-01	ci left: 4.040573e-04	ci right 4.757427e-04	k: 588	n:1340000
Cons ci ratio: 3.512802e-03	ci left: 4.808328e-01	ci right 4.825255e-01	k: 645450	n:1340000
KS ci ratio: 1.196223e-01	ci left: 7.528386e-04	ci right 8.493400e-04	k: 1072	n:1340000
PYGO2   1340000 perm   898 sec   (1493 perm/sec)   p_kst 8.000000e-04   p_cons 4.816791e-01   p_joint 4.388060e-04

Joint ci ratio: 1.608041e-01	ci left: 4.046186e-04	ci right 4.760716e-04	k: 593	n:1350000
Cons ci ratio: 3.499657e-03	ci left: 4.808516e-01	ci right 4.825381e-01	k: 650288	n:1350000
KS ci ratio: 1.191788e-01	ci left: 7.530110e-04	ci right 8.491515e-04	k: 1080	n:1350000
PYGO2   1350000 perm   909 sec   (1485 perm/sec)   p_kst 8.000000e-04   p_cons 4.816948e-01   p_joint 4.392593e-04

Joint ci ratio: 1.599980e-01	ci left: 4.058782e-04	ci right 4.771597e-04	k: 599	n:1360000
Cons ci ratio: 3.486392e-03	ci left: 4.809084e-01	ci right 4.825887e-01	k: 655178	n:1360000
KS ci ratio: 1.186857e-01	ci left: 7.538950e-04	ci right 8.497221e-04	k: 1089	n:1360000
PYGO2   1360000 perm   921 sec   (1477 perm/sec)   p_kst 8.007353e-04   p_cons 4.817485e-01   p_joint 4.404412e-04

Joint ci ratio: 1.588110e-01	ci left: 4.092229e-04	ci right 4.805079e-04	k: 608	n:1370000
Cons ci ratio: 3.473621e-03	ci left: 4.809148e-01	ci right 4.825889e-01	k: 660000	n:1370000
KS ci ratio: 1.180376e-01	ci left: 7.568919e-04	ci right 8.525380e-04	k: 1101	n:1370000
PYGO2   1370000 perm   933 sec   (1468 perm/sec)   p_kst 8.036496e-04   p_cons 4.817518e-01   p_joint 4.437956e-04

Joint ci ratio: 1.584214e-01	ci left: 4.083451e-04	ci right 4.792861e-04	k: 611	n:1380000
Cons ci ratio: 3.460840e-03	ci left: 4.809428e-01	ci right 4.826109e-01	k: 664852	n:1380000
KS ci ratio: 1.176645e-01	ci left: 7.563301e-04	ci right 8.515821e-04	k: 1108	n:1380000
PYGO2   1380000 perm   945 sec   (1460 perm/sec)   p_kst 8.028986e-04   p_cons 4.817768e-01   p_joint 4.427536e-04

Joint ci ratio: 1.580346e-01	ci left: 4.074802e-04	ci right 4.780817e-04	k: 614	n:1390000
Cons ci ratio: 3.448596e-03	ci left: 4.809129e-01	ci right 4.825749e-01	k: 669624	n:1390000
KS ci ratio: 1.174003e-01	ci left: 7.543802e-04	ci right 8.491585e-04	k: 1113	n:1390000
PYGO2   1390000 perm   957 sec   (1452 perm/sec)   p_kst 8.007194e-04   p_cons 4.817439e-01   p_joint 4.417266e-04

Joint ci ratio: 1.571427e-01	ci left: 4.093725e-04	ci right 4.798638e-04	k: 621	n:1400000
Cons ci ratio: 3.436171e-03	ci left: 4.809284e-01	ci right 4.825845e-01	k: 674459	n:1400000
KS ci ratio: 1.168768e-01	ci left: 7.559254e-04	ci right 8.504451e-04	k: 1123	n:1400000
PYGO2   1400000 perm   969 sec   (1445 perm/sec)   p_kst 8.021429e-04   p_cons 4.817564e-01   p_joint 4.435714e-04

Joint ci ratio: 1.570167e-01	ci left: 4.071504e-04	ci right 4.771976e-04	k: 622	n:1410000
Cons ci ratio: 3.423991e-03	ci left: 4.809274e-01	ci right 4.825776e-01	k: 679271	n:1410000
KS ci ratio: 1.168251e-01	ci left: 7.512526e-04	ci right 8.451437e-04	k: 1124	n:1410000
PYGO2   1410000 perm   981 sec   (1437 perm/sec)   p_kst 7.971631e-04   p_cons 4.817525e-01   p_joint 4.411348e-04

Joint ci ratio: 1.566401e-01	ci left: 4.063129e-04	ci right 4.760326e-04	k: 625	n:1420000
Cons ci ratio: 3.411964e-03	ci left: 4.809229e-01	ci right 4.825673e-01	k: 684078	n:1420000
KS ci ratio: 1.165149e-01	ci left: 7.500641e-04	ci right 8.435406e-04	k: 1130	n:1420000
PYGO2   1420000 perm   993 sec   (1430 perm/sec)   p_kst 7.957746e-04   p_cons 4.817451e-01   p_joint 4.401408e-04

Joint ci ratio: 1.558947e-01	ci left: 4.075033e-04	ci right 4.770634e-04	k: 631	n:1430000
Cons ci ratio: 3.400097e-03	ci left: 4.809136e-01	ci right 4.825522e-01	k: 688878	n:1430000
KS ci ratio: 1.160031e-01	ci left: 7.516086e-04	ci right 8.448379e-04	k: 1140	n:1430000
PYGO2   1430000 perm   1006 sec   (1422 perm/sec)   p_kst 7.972028e-04   p_cons 4.817329e-01   p_joint 4.412587e-04

Joint ci ratio: 1.554037e-01	ci left: 4.073431e-04	ci right 4.766364e-04	k: 635	n:1440000
Cons ci ratio: 3.388357e-03	ci left: 4.809037e-01	ci right 4.825366e-01	k: 693677	n:1440000
KS ci ratio: 1.156490e-01	ci left: 7.511094e-04	ci right 8.439729e-04	k: 1147	n:1440000
PYGO2   1440000 perm   1018 sec   (1415 perm/sec)   p_kst 7.965278e-04   p_cons 4.817201e-01   p_joint 4.409722e-04

Joint ci ratio: 1.551601e-01	ci left: 4.058595e-04	ci right 4.747821e-04	k: 637	n:1450000
Cons ci ratio: 3.376611e-03	ci left: 4.809126e-01	ci right 4.825399e-01	k: 698503	n:1450000
KS ci ratio: 1.153480e-01	ci left: 7.499477e-04	ci right 8.424098e-04	k: 1153	n:1450000
PYGO2   1450000 perm   1030 sec   (1408 perm/sec)   p_kst 7.951724e-04   p_cons 4.817262e-01   p_joint 4.393103e-04

Joint ci ratio: 1.544355e-01	ci left: 4.070300e-04	ci right 4.757988e-04	k: 643	n:1460000
Cons ci ratio: 3.365255e-03	ci left: 4.808817e-01	ci right 4.825033e-01	k: 703271	n:1460000
KS ci ratio: 1.146544e-01	ci left: 7.541244e-04	ci right 8.465046e-04	k: 1167	n:1460000
PYGO2   1460000 perm   1043 sec   (1400 perm/sec)   p_kst 7.993151e-04   p_cons 4.816925e-01   p_joint 4.404110e-04

Joint ci ratio: 1.538394e-01	ci left: 4.075313e-04	ci right 4.760945e-04	k: 648	n:1470000
Cons ci ratio: 3.353346e-03	ci left: 4.809505e-01	ci right 4.825666e-01	k: 708185	n:1470000
KS ci ratio: 1.142152e-01	ci left: 7.549415e-04	ci right 8.470436e-04	k: 1176	n:1470000
PYGO2   1470000 perm   1055 sec   (1393 perm/sec)   p_kst 8.000000e-04   p_cons 4.817585e-01   p_joint 4.408163e-04

Joint ci ratio: 1.532502e-01	ci left: 4.080263e-04	ci right 4.763858e-04	k: 653	n:1480000
Cons ci ratio: 3.341914e-03	ci left: 4.809656e-01	ci right 4.825763e-01	k: 713021	n:1480000
KS ci ratio: 1.138771e-01	ci left: 7.544353e-04	ci right 8.461850e-04	k: 1183	n:1480000
PYGO2   1480000 perm   1068 sec   (1386 perm/sec)   p_kst 7.993243e-04   p_cons 4.817709e-01   p_joint 4.412162e-04

Joint ci ratio: 1.525519e-01	ci left: 4.091607e-04	ci right 4.773693e-04	k: 659	n:1490000
Cons ci ratio: 3.330572e-03	ci left: 4.809846e-01	ci right 4.825899e-01	k: 717863	n:1490000
KS ci ratio: 1.133991e-01	ci left: 7.558927e-04	ci right 8.474079e-04	k: 1193	n:1490000
PYGO2   1490000 perm   1081 sec   (1379 perm/sec)   p_kst 8.006711e-04   p_cons 4.817872e-01   p_joint 4.422819e-04

Joint ci ratio: 1.520918e-01	ci left: 4.089980e-04	ci right 4.769551e-04	k: 663	n:1500000
Cons ci ratio: 3.319487e-03	ci left: 4.809821e-01	ci right 4.825820e-01	k: 722673	n:1500000
KS ci ratio: 1.130682e-01	ci left: 7.553879e-04	ci right 8.465573e-04	k: 1200	n:1500000
PYGO2   1500000 perm   1093 sec   (1372 perm/sec)   p_kst 8.000000e-04   p_cons 4.817820e-01   p_joint 4.420000e-04

Joint ci ratio: 1.516358e-01	ci left: 4.088377e-04	ci right 4.765460e-04	k: 667	n:1510000
Cons ci ratio: 3.308498e-03	ci left: 4.809815e-01	ci right 4.825761e-01	k: 727486	n:1510000
KS ci ratio: 1.128805e-01	ci left: 7.529594e-04	ci right 8.436749e-04	k: 1204	n:1510000
PYGO2   1510000 perm   1106 sec   (1365 perm/sec)   p_kst 7.973510e-04   p_cons 4.817788e-01   p_joint 4.417219e-04

Joint ci ratio: 1.509592e-01	ci left: 4.099459e-04	ci right 4.775075e-04	k: 673	n:1520000
Cons ci ratio: 3.297870e-03	ci left: 4.809429e-01	ci right 4.825322e-01	k: 732241	n:1520000
KS ci ratio: 1.125077e-01	ci left: 7.531205e-04	ci right 8.435358e-04	k: 1212	n:1520000
PYGO2   1520000 perm   1119 sec   (1358 perm/sec)   p_kst 7.973684e-04   p_cons 4.817375e-01   p_joint 4.427632e-04

Joint ci ratio: 1.501812e-01	ci left: 4.116694e-04	ci right 4.791339e-04	k: 680	n:1530000
Cons ci ratio: 3.287438e-03	ci left: 4.808903e-01	ci right 4.824745e-01	k: 736974	n:1530000
KS ci ratio: 1.119094e-01	ci left: 7.564565e-04	ci right 8.467575e-04	k: 1225	n:1530000
PYGO2   1530000 perm   1132 sec   (1352 perm/sec)   p_kst 8.006536e-04   p_cons 4.816824e-01   p_joint 4.444444e-04

Joint ci ratio: 1.498516e-01	ci left: 4.108711e-04	ci right 4.780438e-04	k: 683	n:1540000
Cons ci ratio: 3.276529e-03	ci left: 4.809261e-01	ci right 4.825051e-01	k: 741842	n:1540000
KS ci ratio: 1.117729e-01	ci left: 7.534380e-04	ci right 8.432617e-04	k: 1228	n:1540000
PYGO2   1540000 perm   1145 sec   (1345 perm/sec)   p_kst 7.974026e-04   p_cons 4.817156e-01   p_joint 4.435065e-04

Joint ci ratio: 1.493069e-01	ci left: 4.113254e-04	ci right 4.783061e-04	k: 688	n:1550000
Cons ci ratio: 3.265972e-03	ci left: 4.809241e-01	ci right 4.824979e-01	k: 746652	n:1550000
KS ci ratio: 1.113659e-01	ci left: 7.542215e-04	ci right 8.437897e-04	k: 1237	n:1550000
PYGO2   1550000 perm   1158 sec   (1339 perm/sec)   p_kst 7.980645e-04   p_cons 4.817110e-01   p_joint 4.438710e-04

Joint ci ratio: 1.487680e-01	ci left: 4.117743e-04	ci right 4.785646e-04	k: 693	n:1560000
Cons ci ratio: 3.255530e-03	ci left: 4.809201e-01	ci right 4.824889e-01	k: 751459	n:1560000
KS ci ratio: 1.109632e-01	ci left: 7.549956e-04	ci right 8.443104e-04	k: 1246	n:1560000
PYGO2   1560000 perm   1171 sec   (1332 perm/sec)   p_kst 7.987179e-04   p_cons 4.817045e-01   p_joint 4.442308e-04

Joint ci ratio: 1.481290e-01	ci left: 4.128313e-04	ci right 4.794799e-04	k: 699	n:1570000
Cons ci ratio: 3.245340e-03	ci left: 4.808927e-01	ci right 4.824565e-01	k: 756229	n:1570000
KS ci ratio: 1.103016e-01	ci left: 7.594766e-04	ci right 8.487509e-04	k: 1261	n:1570000
PYGO2   1570000 perm   1184 sec   (1326 perm/sec)   p_kst 8.031847e-04   p_cons 4.816745e-01   p_joint 4.452229e-04

Joint ci ratio: 1.477076e-01	ci left: 4.126564e-04	ci right 4.790705e-04	k: 703	n:1580000
Cons ci ratio: 3.235000e-03	ci left: 4.809035e-01	ci right 4.824624e-01	k: 761059	n:1580000
KS ci ratio: 1.099536e-01	ci left: 7.595936e-04	ci right 8.485817e-04	k: 1269	n:1580000
PYGO2   1580000 perm   1197 sec   (1320 perm/sec)   p_kst 8.031646e-04   p_cons 4.816829e-01   p_joint 4.449367e-04

Joint ci ratio: 1.473939e-01	ci left: 4.118782e-04	ci right 4.780139e-04	k: 706	n:1590000
Cons ci ratio: 3.224497e-03	ci left: 4.809545e-01	ci right 4.825085e-01	k: 765953	n:1590000
KS ci ratio: 1.096519e-01	ci left: 7.590979e-04	ci right 8.477681e-04	k: 1276	n:1590000
PYGO2   1590000 perm   1211 sec   (1313 perm/sec)   p_kst 8.025157e-04   p_cons 4.817314e-01   p_joint 4.440252e-04

Joint ci ratio: 1.465669e-01	ci left: 4.141201e-04	ci right 4.802100e-04	k: 714	n:1600000
Cons ci ratio: 3.214450e-03	ci left: 4.809499e-01	ci right 4.824989e-01	k: 770759	n:1600000
KS ci ratio: 1.091825e-01	ci left: 7.610404e-04	ci right 8.495326e-04	k: 1287	n:1600000
PYGO2   1600000 perm   1224 sec   (1307 perm/sec)   p_kst 8.043750e-04   p_cons 4.817244e-01   p_joint 4.462500e-04

Joint ci ratio: 1.461586e-01	ci left: 4.139414e-04	ci right 4.798027e-04	k: 718	n:1610000
Cons ci ratio: 3.204102e-03	ci left: 4.810068e-01	ci right 4.825510e-01	k: 775664	n:1610000
KS ci ratio: 1.089713e-01	ci left: 7.593343e-04	ci right 8.474463e-04	k: 1292	n:1610000
PYGO2   1610000 perm   1238 sec   (1301 perm/sec)   p_kst 8.024845e-04   p_cons 4.817789e-01   p_joint 4.459627e-04

Joint ci ratio: 1.455525e-01	ci left: 4.149548e-04	ci right 4.806797e-04	k: 724	n:1620000
Cons ci ratio: 3.194335e-03	ci left: 4.809877e-01	ci right 4.825272e-01	k: 780447	n:1620000
KS ci ratio: 1.084690e-01	ci left: 7.618531e-04	ci right 8.498239e-04	k: 1304	n:1620000
PYGO2   1620000 perm   1252 sec   (1294 perm/sec)   p_kst 8.049383e-04   p_cons 4.817574e-01   p_joint 4.469136e-04

Joint ci ratio: 1.449539e-01	ci left: 4.159563e-04	ci right 4.815454e-04	k: 730	n:1630000
Cons ci ratio: 3.184708e-03	ci left: 4.809609e-01	ci right 4.824956e-01	k: 785217	n:1630000
KS ci ratio: 1.080969e-01	ci left: 7.625511e-04	ci right 8.502812e-04	k: 1313	n:1630000
PYGO2   1630000 perm   1266 sec   (1288 perm/sec)   p_kst 8.055215e-04   p_cons 4.817282e-01   p_joint 4.478528e-04

Joint ci ratio: 1.444606e-01	ci left: 4.163584e-04	ci right 4.817683e-04	k: 735	n:1640000
Cons ci ratio: 3.175132e-03	ci left: 4.809399e-01	ci right 4.824699e-01	k: 789996	n:1640000
KS ci ratio: 1.076065e-01	ci left: 7.650211e-04	ci right 8.526109e-04	k: 1325	n:1640000
PYGO2   1640000 perm   1279 sec   (1282 perm/sec)   p_kst 8.079268e-04   p_cons 4.817049e-01   p_joint 4.481707e-04

Joint ci ratio: 1.439724e-01	ci left: 4.167559e-04	ci right 4.819880e-04	k: 740	n:1650000
Cons ci ratio: 3.165308e-03	ci left: 4.809719e-01	ci right 4.824973e-01	k: 794862	n:1650000
KS ci ratio: 1.072431e-01	ci left: 7.656926e-04	ci right 8.530445e-04	k: 1334	n:1650000
PYGO2   1650000 perm   1293 sec   (1276 perm/sec)   p_kst 8.084848e-04   p_cons 4.817345e-01   p_joint 4.484848e-04

Joint ci ratio: 1.433930e-01	ci left: 4.177299e-04	ci right 4.828288e-04	k: 746	n:1660000
Cons ci ratio: 3.155498e-03	ci left: 4.810155e-01	ci right 4.825363e-01	k: 799748	n:1660000
KS ci ratio: 1.068834e-01	ci left: 7.663565e-04	ci right 8.534725e-04	k: 1343	n:1660000
PYGO2   1660000 perm   1307 sec   (1270 perm/sec)   p_kst 8.090361e-04   p_cons 4.817759e-01   p_joint 4.493976e-04

Joint ci ratio: 1.431060e-01	ci left: 4.169605e-04	ci right 4.817983e-04	k: 749	n:1670000
Cons ci ratio: 3.146227e-03	ci left: 4.809874e-01	ci right 4.825037e-01	k: 804515	n:1670000
KS ci ratio: 1.065668e-01	ci left: 7.664301e-04	ci right 8.532801e-04	k: 1351	n:1670000
PYGO2   1670000 perm   1321 sec   (1264 perm/sec)   p_kst 8.089820e-04   p_cons 4.817455e-01   p_joint 4.485030e-04

Joint ci ratio: 1.428207e-01	ci left: 4.162005e-04	ci right 4.807800e-04	k: 752	n:1680000
Cons ci ratio: 3.136665e-03	ci left: 4.810192e-01	ci right 4.825309e-01	k: 809382	n:1680000
KS ci ratio: 1.063311e-01	ci left: 7.653444e-04	ci right 8.518676e-04	k: 1357	n:1680000
PYGO2   1680000 perm   1335 sec   (1258 perm/sec)   p_kst 8.077381e-04   p_cons 4.817750e-01   p_joint 4.476190e-04

Joint ci ratio: 1.424429e-01	ci left: 4.160201e-04	ci right 4.803865e-04	k: 756	n:1690000
Cons ci ratio: 3.127366e-03	ci left: 4.810221e-01	ci right 4.825294e-01	k: 814201	n:1690000
KS ci ratio: 1.060193e-01	ci left: 7.654237e-04	ci right 8.516864e-04	k: 1365	n:1690000
PYGO2   1690000 perm   1349 sec   (1253 perm/sec)   p_kst 8.076923e-04   p_cons 4.817757e-01   p_joint 4.473373e-04

Joint ci ratio: 1.418816e-01	ci left: 4.169768e-04	ci right 4.812155e-04	k: 762	n:1700000
Cons ci ratio: 3.118220e-03	ci left: 4.810139e-01	ci right 4.825167e-01	k: 819001	n:1700000
KS ci ratio: 1.056333e-01	ci left: 7.666479e-04	ci right 8.527144e-04	k: 1375	n:1700000
PYGO2   1700000 perm   1363 sec   (1247 perm/sec)   p_kst 8.088235e-04   p_cons 4.817653e-01   p_joint 4.482353e-04

Joint ci ratio: 1.416036e-01	ci left: 4.162305e-04	ci right 4.802180e-04	k: 765	n:1710000
Cons ci ratio: 3.109091e-03	ci left: 4.810157e-01	ci right 4.825141e-01	k: 823818	n:1710000
KS ci ratio: 1.052515e-01	ci left: 7.678583e-04	ci right 8.537298e-04	k: 1385	n:1710000
PYGO2   1710000 perm   1378 sec   (1241 perm/sec)   p_kst 8.099415e-04   p_cons 4.817649e-01   p_joint 4.473684e-04

Joint ci ratio: 1.409609e-01	ci left: 4.177365e-04	ci right 4.816395e-04	k: 772	n:1720000
Cons ci ratio: 3.099815e-03	ci left: 4.810542e-01	ci right 4.825482e-01	k: 828698	n:1720000
KS ci ratio: 1.049114e-01	ci left: 7.684891e-04	ci right 8.541363e-04	k: 1394	n:1720000
PYGO2   1720000 perm   1392 sec   (1236 perm/sec)   p_kst 8.104651e-04   p_cons 4.818012e-01   p_joint 4.488372e-04

Joint ci ratio: 1.406882e-01	ci left: 4.169949e-04	ci right 4.806506e-04	k: 775	n:1730000
Cons ci ratio: 3.090789e-03	ci left: 4.810650e-01	ci right 4.825547e-01	k: 833531	n:1730000
KS ci ratio: 1.046866e-01	ci left: 7.674243e-04	ci right 8.527582e-04	k: 1400	n:1730000
PYGO2   1730000 perm   1406 sec   (1230 perm/sec)   p_kst 8.092486e-04   p_cons 4.818098e-01   p_joint 4.479769e-04

Joint ci ratio: 1.403270e-01	ci left: 4.168164e-04	ci right 4.802679e-04	k: 779	n:1740000
Cons ci ratio: 3.081913e-03	ci left: 4.810642e-01	ci right 4.825496e-01	k: 838344	n:1740000
KS ci ratio: 1.043890e-01	ci left: 7.674913e-04	ci right 8.525752e-04	k: 1408	n:1740000
PYGO2   1740000 perm   1421 sec   (1225 perm/sec)   p_kst 8.091954e-04   p_cons 4.818069e-01   p_joint 4.477011e-04

Joint ci ratio: 1.400580e-01	ci left: 4.160887e-04	ci right 4.792979e-04	k: 782	n:1750000
Cons ci ratio: 3.073007e-03	ci left: 4.810806e-01	ci right 4.825618e-01	k: 843187	n:1750000
KS ci ratio: 1.042043e-01	ci left: 7.658882e-04	ci right 8.506350e-04	k: 1413	n:1750000
PYGO2   1750000 perm   1435 sec   (1220 perm/sec)   p_kst 8.074286e-04   p_cons 4.818211e-01   p_joint 4.468571e-04

Joint ci ratio: 1.392598e-01	ci left: 4.186596e-04	ci right 4.818667e-04	k: 791	n:1760000
Cons ci ratio: 3.064126e-03	ci left: 4.811053e-01	ci right 4.825823e-01	k: 848045	n:1760000
KS ci ratio: 1.036558e-01	ci left: 7.698378e-04	ci right 8.545459e-04	k: 1428	n:1760000
PYGO2   1760000 perm   1449 sec   (1214 perm/sec)   p_kst 8.113636e-04   p_cons 4.818438e-01   p_joint 4.494318e-04

Joint ci ratio: 1.388222e-01	ci left: 4.190209e-04	ci right 4.820674e-04	k: 796	n:1770000
Cons ci ratio: 3.055408e-03	ci left: 4.811156e-01	ci right 4.825884e-01	k: 852878	n:1770000
KS ci ratio: 1.033668e-01	ci left: 7.698912e-04	ci right 8.543547e-04	k: 1436	n:1770000
PYGO2   1770000 perm   1464 sec   (1209 perm/sec)   p_kst 8.112994e-04   p_cons 4.818520e-01   p_joint 4.497175e-04

Joint ci ratio: 1.383888e-01	ci left: 4.193784e-04	ci right 4.822655e-04	k: 801	n:1780000
Cons ci ratio: 3.046822e-03	ci left: 4.811163e-01	ci right 4.825849e-01	k: 857694	n:1780000
KS ci ratio: 1.030090e-01	ci left: 7.710390e-04	ci right 8.553179e-04	k: 1446	n:1780000
PYGO2   1780000 perm   1479 sec   (1204 perm/sec)   p_kst 8.123596e-04   p_cons 4.818506e-01   p_joint 4.500000e-04

Joint ci ratio: 1.380450e-01	ci left: 4.191929e-04	ci right 4.818831e-04	k: 805	n:1790000
Cons ci ratio: 3.038097e-03	ci left: 4.811516e-01	ci right 4.826161e-01	k: 862572	n:1790000
KS ci ratio: 1.026548e-01	ci left: 7.721745e-04	ci right 8.562698e-04	k: 1456	n:1790000
PYGO2   1790000 perm   1494 sec   (1198 perm/sec)   p_kst 8.134078e-04   p_cons 4.818838e-01   p_joint 4.497207e-04

Joint ci ratio: 1.376188e-01	ci left: 4.195460e-04	ci right 4.820795e-04	k: 810	n:1800000
Cons ci ratio: 3.029558e-03	ci left: 4.811681e-01	ci right 4.826286e-01	k: 867417	n:1800000
KS ci ratio: 1.023043e-01	ci left: 7.732978e-04	ci right 8.572106e-04	k: 1466	n:1800000
PYGO2   1800000 perm   1509 sec   (1193 perm/sec)   p_kst 8.144444e-04   p_cons 4.818983e-01   p_joint 4.500000e-04

Joint ci ratio: 1.372807e-01	ci left: 4.193620e-04	ci right 4.817020e-04	k: 814	n:1810000
Cons ci ratio: 3.021073e-03	ci left: 4.811873e-01	ci right 4.826437e-01	k: 872267	n:1810000
KS ci ratio: 1.020611e-01	ci left: 7.727940e-04	ci right 8.564408e-04	k: 1473	n:1810000
PYGO2   1810000 perm   1523 sec   (1188 perm/sec)   p_kst 8.138122e-04   p_cons 4.819155e-01   p_joint 4.497238e-04

Joint ci ratio: 1.368615e-01	ci left: 4.197109e-04	ci right 4.818966e-04	k: 819	n:1820000
Cons ci ratio: 3.012587e-03	ci left: 4.812183e-01	ci right 4.826707e-01	k: 877139	n:1820000
KS ci ratio: 1.017509e-01	ci left: 7.733669e-04	ci right 8.568061e-04	k: 1482	n:1820000
PYGO2   1820000 perm   1538 sec   (1183 perm/sec)   p_kst 8.142857e-04   p_cons 4.819445e-01   p_joint 4.500000e-04

Joint ci ratio: 1.366118e-01	ci left: 4.190007e-04	ci right 4.809587e-04	k: 822	n:1830000
Cons ci ratio: 3.004402e-03	ci left: 4.812108e-01	ci right 4.826592e-01	k: 881941	n:1830000
KS ci ratio: 1.015799e-01	ci left: 7.718036e-04	ci right 8.549259e-04	k: 1487	n:1830000
PYGO2   1830000 perm   1553 sec   (1178 perm/sec)   p_kst 8.125683e-04   p_cons 4.819350e-01   p_joint 4.491803e-04

Joint ci ratio: 1.365291e-01	ci left: 4.172484e-04	ci right 4.789069e-04	k: 823	n:1840000
Cons ci ratio: 2.996150e-03	ci left: 4.812256e-01	ci right 4.826701e-01	k: 886784	n:1840000
KS ci ratio: 1.014778e-01	ci left: 7.691980e-04	ci right 8.519514e-04	k: 1490	n:1840000
PYGO2   1840000 perm   1568 sec   (1173 perm/sec)   p_kst 8.097826e-04   p_cons 4.819478e-01   p_joint 4.472826e-04

Joint ci ratio: 1.359527e-01	ci left: 4.186478e-04	ci right 4.802309e-04	k: 830	n:1850000
Cons ci ratio: 2.987991e-03	ci left: 4.812359e-01	ci right 4.826765e-01	k: 891619	n:1850000
KS ci ratio: 1.011055e-01	ci left: 7.708355e-04	ci right 8.534428e-04	k: 1501	n:1850000
PYGO2   1850000 perm   1584 sec   (1168 perm/sec)   p_kst 8.113514e-04   p_cons 4.819562e-01   p_joint 4.486486e-04

Joint ci ratio: 1.353029e-01	ci left: 4.205522e-04	ci right 4.820959e-04	k: 838	n:1860000
Cons ci ratio: 2.980277e-03	ci left: 4.811827e-01	ci right 4.826195e-01	k: 896336	n:1860000
KS ci ratio: 1.007705e-01	ci left: 7.719319e-04	ci right 8.543663e-04	k: 1511	n:1860000
PYGO2   1860000 perm   1599 sec   (1163 perm/sec)   p_kst 8.123656e-04   p_cons 4.819011e-01   p_joint 4.505376e-04

Joint ci ratio: 1.349015e-01	ci left: 4.208867e-04	ci right 4.822819e-04	k: 843	n:1870000
Cons ci ratio: 2.972167e-03	ci left: 4.812066e-01	ci right 4.826395e-01	k: 901196	n:1870000
KS ci ratio: 1.005712e-01	ci left: 7.709316e-04	ci right 8.530869e-04	k: 1517	n:1870000
PYGO2   1870000 perm   1615 sec   (1158 perm/sec)   p_kst 8.112299e-04   p_cons 4.819230e-01   p_joint 4.508021e-04

Joint ci ratio: 1.347420e-01	ci left: 4.196758e-04	ci right 4.808163e-04	k: 845	n:1880000
Cons ci ratio: 2.963984e-03	ci left: 4.812536e-01	ci right 4.826826e-01	k: 906100	n:1880000
KS ci ratio: 1.003731e-01	ci left: 7.699422e-04	ci right 8.518209e-04	k: 1523	n:1880000
PYGO2   1880000 perm   1631 sec   (1153 perm/sec)   p_kst 8.101064e-04   p_cons 4.819681e-01   p_joint 4.494681e-04

Joint ci ratio: 1.341093e-01	ci left: 4.215458e-04	ci right 4.826473e-04	k: 853	n:1890000
Cons ci ratio: 2.956219e-03	ci left: 4.812408e-01	ci right 4.826661e-01	k: 910892	n:1890000
KS ci ratio: 1.000127e-01	ci left: 7.715428e-04	ci right 8.532797e-04	k: 1534	n:1890000
PYGO2   1890000 perm   1646 sec   (1148 perm/sec)   p_kst 8.116402e-04   p_cons 4.819534e-01   p_joint 4.513228e-04

Joint ci ratio: 1.337963e-01	ci left: 4.213619e-04	ci right 4.822829e-04	k: 857	n:1900000
Cons ci ratio: 2.948136e-03	ci left: 4.812924e-01	ci right 4.827139e-01	k: 915806	n:1900000
KS ci ratio: 9.975314e-02	ci left: 7.715873e-04	ci right 8.531045e-04	k: 1542	n:1900000
PYGO2   1900000 perm   1662 sec   (1143 perm/sec)   p_kst 8.115789e-04   p_cons 4.820032e-01   p_joint 4.510526e-04

Joint ci ratio: 1.334082e-01	ci left: 4.216861e-04	ci right 4.824631e-04	k: 862	n:1910000
Cons ci ratio: 2.940430e-03	ci left: 4.812906e-01	ci right 4.827084e-01	k: 920619	n:1910000
KS ci ratio: 9.949555e-02	ci left: 7.716317e-04	ci right 8.529308e-04	k: 1550	n:1910000
PYGO2   1910000 perm   1678 sec   (1139 perm/sec)   p_kst 8.115183e-04   p_cons 4.819995e-01   p_joint 4.513089e-04

Joint ci ratio: 1.331001e-01	ci left: 4.215037e-04	ci right 4.821030e-04	k: 866	n:1920000
Cons ci ratio: 2.932974e-03	ci left: 4.812565e-01	ci right 4.826706e-01	k: 925370	n:1920000
KS ci ratio: 9.920810e-02	ci left: 7.721839e-04	ci right 8.532923e-04	k: 1559	n:1920000
PYGO2   1920000 perm   1693 sec   (1134 perm/sec)   p_kst 8.119792e-04   p_cons 4.819635e-01   p_joint 4.510417e-04

Joint ci ratio: 1.325659e-01	ci left: 4.228262e-04	ci right 4.833524e-04	k: 873	n:1930000
Cons ci ratio: 2.925370e-03	ci left: 4.812575e-01	ci right 4.826679e-01	k: 930188	n:1930000
KS ci ratio: 9.879718e-02	ci left: 7.747519e-04	ci right 8.557735e-04	k: 1572	n:1930000
PYGO2   1930000 perm   1709 sec   (1129 perm/sec)   p_kst 8.145078e-04   p_cons 4.819627e-01   p_joint 4.523316e-04

Joint ci ratio: 1.323390e-01	ci left: 4.221418e-04	ci right 4.824585e-04	k: 876	n:1940000
Cons ci ratio: 2.918172e-03	ci left: 4.811992e-01	ci right 4.826060e-01	k: 934891	n:1940000
KS ci ratio: 9.864061e-02	ci left: 7.732720e-04	ci right 8.540033e-04	k: 1577	n:1940000
PYGO2   1940000 perm   1726 sec   (1124 perm/sec)   p_kst 8.128866e-04   p_cons 4.819026e-01   p_joint 4.515464e-04

Joint ci ratio: 1.319634e-01	ci left: 4.224563e-04	ci right 4.826332e-04	k: 881	n:1950000
Cons ci ratio: 2.910887e-03	ci left: 4.811656e-01	ci right 4.825688e-01	k: 939641	n:1950000
KS ci ratio: 9.832949e-02	ci left: 7.743085e-04	ci right 8.548782e-04	k: 1587	n:1950000
PYGO2   1950000 perm   1742 sec   (1119 perm/sec)   p_kst 8.138462e-04   p_cons 4.818672e-01   p_joint 4.517949e-04

Joint ci ratio: 1.318141e-01	ci left: 4.212876e-04	ci right 4.812249e-04	k: 883	n:1960000
Cons ci ratio: 2.903501e-03	ci left: 4.811589e-01	ci right 4.825585e-01	k: 944443	n:1960000
KS ci ratio: 9.811351e-02	ci left: 7.738416e-04	ci right 8.541758e-04	k: 1594	n:1960000
PYGO2   1960000 perm   1758 sec   (1115 perm/sec)   p_kst 8.132653e-04   p_cons 4.818587e-01   p_joint 4.505102e-04

Joint ci ratio: 1.315169e-01	ci left: 4.211127e-04	ci right 4.808794e-04	k: 887	n:1970000
Cons ci ratio: 2.896124e-03	ci left: 4.811604e-01	ci right 4.825564e-01	k: 949261	n:1970000
KS ci ratio: 9.774641e-02	ci left: 7.758557e-04	ci right 8.560803e-04	k: 1606	n:1970000
PYGO2   1970000 perm   1774 sec   (1110 perm/sec)   p_kst 8.152284e-04   p_cons 4.818584e-01   p_joint 4.502538e-04

Joint ci ratio: 1.311482e-01	ci left: 4.214282e-04	ci right 4.810589e-04	k: 892	n:1980000
Cons ci ratio: 2.889002e-03	ci left: 4.811275e-01	ci right 4.825200e-01	k: 954011	n:1980000
KS ci ratio: 9.747382e-02	ci left: 7.763717e-04	ci right 8.564130e-04	k: 1615	n:1980000
PYGO2   1980000 perm   1791 sec   (1106 perm/sec)   p_kst 8.156566e-04   p_cons 4.818237e-01   p_joint 4.505051e-04

Joint ci ratio: 1.308555e-01	ci left: 4.212546e-04	ci right 4.807174e-04	k: 896	n:1990000
Cons ci ratio: 2.881966e-03	ci left: 4.810890e-01	ci right 4.824779e-01	k: 958749	n:1990000
KS ci ratio: 9.717358e-02	ci left: 7.773732e-04	ci right 8.572568e-04	k: 1625	n:1990000
PYGO2   1990000 perm   1807 sec   (1101 perm/sec)   p_kst 8.165829e-04   p_cons 4.817834e-01   p_joint 4.502513e-04

Joint ci ratio: 1.307827e-01	ci left: 4.196319e-04	ci right 4.788302e-04	k: 897	n:2000000
Cons ci ratio: 2.874772e-03	ci left: 4.810873e-01	ci right 4.824728e-01	k: 963560	n:2000000
KS ci ratio: 9.708418e-02	ci left: 7.749498e-04	ci right 8.545070e-04	k: 1628	n:2000000
PYGO2   2000000 perm   1823 sec   (1097 perm/sec)   p_kst 8.140000e-04   p_cons 4.817800e-01   p_joint 4.485000e-04

Joint ci ratio: 1.302758e-01	ci left: 4.209131e-04	ci right 4.800442e-04	k: 904	n:2010000
Cons ci ratio: 2.867700e-03	ci left: 4.810737e-01	ci right 4.824557e-01	k: 968347	n:2010000
KS ci ratio: 9.675798e-02	ci left: 7.764344e-04	ci right 8.558610e-04	k: 1639	n:2010000
PYGO2   2010000 perm   1840 sec   (1092 perm/sec)   p_kst 8.154229e-04   p_cons 4.817647e-01   p_joint 4.497512e-04

Joint ci ratio: 1.297748e-01	ci left: 4.221820e-04	ci right 4.812457e-04	k: 911	n:2020000
Cons ci ratio: 2.860632e-03	ci left: 4.810686e-01	ci right 4.824472e-01	k: 973151	n:2020000
KS ci ratio: 9.646428e-02	ci left: 7.774216e-04	ci right 8.566941e-04	k: 1649	n:2020000
PYGO2   2020000 perm   1857 sec   (1088 perm/sec)   p_kst 8.163366e-04   p_cons 4.817579e-01   p_joint 4.509901e-04

Joint ci ratio: 1.291391e-01	ci left: 4.243923e-04	ci right 4.834520e-04	k: 920	n:2030000
Cons ci ratio: 2.853503e-03	ci left: 4.810834e-01	ci right 4.824586e-01	k: 977995	n:2030000
KS ci ratio: 9.608639e-02	ci left: 7.798417e-04	ci right 8.590319e-04	k: 1662	n:2030000
PYGO2   2030000 perm   1873 sec   (1084 perm/sec)   p_kst 8.187192e-04   p_cons 4.817709e-01   p_joint 4.532020e-04

Joint ci ratio: 1.287899e-01	ci left: 4.246838e-04	ci right 4.836121e-04	k: 925	n:2040000
Cons ci ratio: 2.846527e-03	ci left: 4.810803e-01	ci right 4.824521e-01	k: 982803	n:2040000
KS ci ratio: 9.585611e-02	ci left: 7.798464e-04	ci right 8.588367e-04	k: 1670	n:2040000
PYGO2   2040000 perm   1890 sec   (1079 perm/sec)   p_kst 8.186275e-04   p_cons 4.817662e-01   p_joint 4.534314e-04

Joint ci ratio: 1.285127e-01	ci left: 4.245006e-04	ci right 4.832670e-04	k: 929	n:2050000
Cons ci ratio: 2.839572e-03	ci left: 4.810826e-01	ci right 4.824511e-01	k: 987622	n:2050000
KS ci ratio: 9.565599e-02	ci left: 7.793751e-04	ci right 8.581436e-04	k: 1677	n:2050000
PYGO2   2050000 perm   1907 sec   (1075 perm/sec)   p_kst 8.180488e-04   p_cons 4.817668e-01   p_joint 4.531707e-04

Joint ci ratio: 1.280317e-01	ci left: 4.257290e-04	ci right 4.844281e-04	k: 936	n:2060000
Cons ci ratio: 2.832630e-03	ci left: 4.810917e-01	ci right 4.824569e-01	k: 992455	n:2060000
KS ci ratio: 9.528748e-02	ci left: 7.817518e-04	ci right 8.604391e-04	k: 1690	n:2060000
PYGO2   2060000 perm   1924 sec   (1071 perm/sec)   p_kst 8.203883e-04   p_cons 4.817743e-01   p_joint 4.543689e-04

Joint ci ratio: 1.274885e-01	ci left: 4.274136e-04	ci right 4.860760e-04	k: 944	n:2070000
Cons ci ratio: 2.825754e-03	ci left: 4.810978e-01	ci right 4.824597e-01	k: 997282	n:2070000
KS ci ratio: 9.500693e-02	ci left: 7.826912e-04	ci right 8.612282e-04	k: 1700	n:2070000
PYGO2   2070000 perm   1940 sec   (1067 perm/sec)   p_kst 8.212560e-04   p_cons 4.817787e-01   p_joint 4.560386e-04

Joint ci ratio: 1.271525e-01	ci left: 4.276860e-04	ci right 4.862195e-04	k: 949	n:2080000
Cons ci ratio: 2.818844e-03	ci left: 4.811188e-01	ci right 4.824774e-01	k: 1002140	n:2080000
KS ci ratio: 9.481207e-02	ci left: 7.822137e-04	ci right 8.605330e-04	k: 1707	n:2080000
PYGO2   2080000 perm   1957 sec   (1063 perm/sec)   p_kst 8.206731e-04   p_cons 4.817981e-01   p_joint 4.562500e-04

Joint ci ratio: 1.267528e-01	ci left: 4.284193e-04	ci right 4.868550e-04	k: 955	n:2090000
Cons ci ratio: 2.811960e-03	ci left: 4.811439e-01	ci right 4.824992e-01	k: 1007007	n:2090000
KS ci ratio: 9.456324e-02	ci left: 7.826754e-04	ci right 8.608237e-04	k: 1716	n:2090000
PYGO2   2090000 perm   1975 sec   (1058 perm/sec)   p_kst 8.210526e-04   p_cons 4.818215e-01   p_joint 4.569378e-04

Joint ci ratio: 1.262257e-01	ci left: 4.300682e-04	ci right 4.884666e-04	k: 963	n:2100000
Cons ci ratio: 2.805375e-03	ci left: 4.811245e-01	ci right 4.824765e-01	k: 1011781	n:2100000
KS ci ratio: 9.428902e-02	ci left: 7.835978e-04	ci right 8.615989e-04	k: 1726	n:2100000
PYGO2   2100000 perm   1992 sec   (1054 perm/sec)   p_kst 8.219048e-04   p_cons 4.818005e-01   p_joint 4.585714e-04

Joint ci ratio: 1.261604e-01	ci left: 4.284889e-04	ci right 4.866405e-04	k: 964	n:2110000
Cons ci ratio: 2.798879e-03	ci left: 4.810976e-01	ci right 4.824465e-01	k: 1016539	n:2110000
KS ci ratio: 9.412571e-02	ci left: 7.826607e-04	ci right 8.604261e-04	k: 1732	n:2110000
PYGO2   2110000 perm   2009 sec   (1050 perm/sec)   p_kst 8.208531e-04   p_cons 4.817720e-01   p_joint 4.568720e-04

Joint ci ratio: 1.260299e-01	ci left: 4.273814e-04	ci right 4.853182e-04	k: 966	n:2120000
Cons ci ratio: 2.792145e-03	ci left: 4.811215e-01	ci right 4.824672e-01	k: 1021404	n:2120000
KS ci ratio: 9.390921e-02	ci left: 7.826537e-04	ci right 8.602297e-04	k: 1740	n:2120000
PYGO2   2120000 perm   2026 sec   (1046 perm/sec)   p_kst 8.207547e-04   p_cons 4.817943e-01   p_joint 4.556604e-04

Joint ci ratio: 1.259649e-01	ci left: 4.258295e-04	ci right 4.835240e-04	k: 967	n:2130000
Cons ci ratio: 2.785685e-03	ci left: 4.811048e-01	ci right 4.824473e-01	k: 1026183	n:2130000
KS ci ratio: 9.382852e-02	ci left: 7.803546e-04	ci right 8.576327e-04	k: 1743	n:2130000
PYGO2   2130000 perm   2043 sec   (1042 perm/sec)   p_kst 8.183099e-04   p_cons 4.817761e-01   p_joint 4.539906e-04

Joint ci ratio: 1.257702e-01	ci left: 4.251974e-04	ci right 4.827105e-04	k: 970	n:2140000
Cons ci ratio: 2.779296e-03	ci left: 4.810836e-01	ci right 4.824230e-01	k: 1030952	n:2140000
KS ci ratio: 9.361406e-02	ci left: 7.803588e-04	ci right 8.574509e-04	k: 1751	n:2140000
PYGO2   2140000 perm   2061 sec   (1038 perm/sec)   p_kst 8.182243e-04   p_cons 4.817533e-01   p_joint 4.532710e-04

Joint ci ratio: 1.253192e-01	ci left: 4.263733e-04	ci right 4.838234e-04	k: 977	n:2150000
Cons ci ratio: 2.772775e-03	ci left: 4.810942e-01	ci right 4.824305e-01	k: 1035789	n:2150000
KS ci ratio: 9.332149e-02	ci left: 7.817260e-04	ci right 8.586986e-04	k: 1762	n:2150000
PYGO2   2150000 perm   2078 sec   (1034 perm/sec)   p_kst 8.195349e-04   p_cons 4.817623e-01   p_joint 4.544186e-04

Joint ci ratio: 1.250638e-01	ci left: 4.261932e-04	ci right 4.834933e-04	k: 981	n:2160000
Cons ci ratio: 2.766327e-03	ci left: 4.810996e-01	ci right 4.824328e-01	k: 1040615	n:2160000
KS ci ratio: 9.305791e-02	ci left: 7.826286e-04	ci right 8.594606e-04	k: 1772	n:2160000
PYGO2   2160000 perm   2096 sec   (1031 perm/sec)   p_kst 8.203704e-04   p_cons 4.817662e-01   p_joint 4.541667e-04

Joint ci ratio: 1.248732e-01	ci left: 4.255685e-04	ci right 4.826909e-04	k: 984	n:2170000
Cons ci ratio: 2.760029e-03	ci left: 4.810861e-01	ci right 4.824162e-01	k: 1045400	n:2170000
KS ci ratio: 9.290090e-02	ci left: 7.817227e-04	ci right 8.583292e-04	k: 1778	n:2170000
PYGO2   2170000 perm   2113 sec   (1027 perm/sec)   p_kst 8.193548e-04   p_cons 4.817512e-01   p_joint 4.534562e-04

Joint ci ratio: 1.247467e-01	ci left: 4.245051e-04	ci right 4.814228e-04	k: 986	n:2180000
Cons ci ratio: 2.753571e-03	ci left: 4.811094e-01	ci right 4.824365e-01	k: 1050265	n:2180000
KS ci ratio: 9.279672e-02	ci left: 7.799290e-04	ci right 8.562694e-04	k: 1782	n:2180000
PYGO2   2180000 perm   2131 sec   (1023 perm/sec)   p_kst 8.174312e-04   p_cons 4.817729e-01   p_joint 4.522936e-04

Joint ci ratio: 1.244947e-01	ci left: 4.243363e-04	ci right 4.811079e-04	k: 990	n:2190000
Cons ci ratio: 2.747252e-03	ci left: 4.811157e-01	ci right 4.824396e-01	k: 1055093	n:2190000
KS ci ratio: 9.258924e-02	ci left: 7.799360e-04	ci right 8.560972e-04	k: 1790	n:2190000
PYGO2   2190000 perm   2149 sec   (1019 perm/sec)   p_kst 8.173516e-04   p_cons 4.817776e-01   p_joint 4.520548e-04

Joint ci ratio: 1.242442e-01	ci left: 4.241691e-04	ci right 4.807958e-04	k: 994	n:2200000
Cons ci ratio: 2.741005e-03	ci left: 4.811164e-01	ci right 4.824373e-01	k: 1059909	n:2200000
KS ci ratio: 9.238315e-02	ci left: 7.799431e-04	ci right 8.559263e-04	k: 1798	n:2200000
PYGO2   2200000 perm   2168 sec   (1015 perm/sec)   p_kst 8.172727e-04   p_cons 4.817768e-01   p_joint 4.518182e-04

Joint ci ratio: 1.239332e-01	ci left: 4.244420e-04	ci right 4.809528e-04	k: 999	n:2210000
Cons ci ratio: 2.734729e-03	ci left: 4.811302e-01	ci right 4.824482e-01	k: 1064754	n:2210000
KS ci ratio: 9.217842e-02	ci left: 7.799503e-04	ci right 8.557567e-04	k: 1806	n:2210000
PYGO2   2210000 perm   2186 sec   (1011 perm/sec)   p_kst 8.171946e-04   p_cons 4.817891e-01   p_joint 4.520362e-04

Joint ci ratio: 1.236861e-01	ci left: 4.242761e-04	ci right 4.806440e-04	k: 1003	n:2220000
Cons ci ratio: 2.728408e-03	ci left: 4.811601e-01	ci right 4.824751e-01	k: 1069635	n:2220000
KS ci ratio: 9.200042e-02	ci left: 7.795175e-04	ci right 8.551277e-04	k: 1813	n:2220000
PYGO2   2220000 perm   2204 sec   (1007 perm/sec)   p_kst 8.166667e-04   p_cons 4.818176e-01   p_joint 4.518018e-04

Joint ci ratio: 1.234405e-01	ci left: 4.241118e-04	ci right 4.803378e-04	k: 1007	n:2230000
Cons ci ratio: 2.722137e-03	ci left: 4.811884e-01	ci right 4.825005e-01	k: 1074513	n:2230000
KS ci ratio: 9.172268e-02	ci left: 7.808414e-04	ci right 8.563391e-04	k: 1824	n:2230000
PYGO2   2230000 perm   2222 sec   (1003 perm/sec)   p_kst 8.179372e-04   p_cons 4.818444e-01   p_joint 4.515695e-04

Joint ci ratio: 1.231963e-01	ci left: 4.239490e-04	ci right 4.800342e-04	k: 1011	n:2240000
Cons ci ratio: 2.716153e-03	ci left: 4.811718e-01	ci right 4.824809e-01	k: 1079291	n:2240000
KS ci ratio: 9.149733e-02	ci left: 7.812813e-04	ci right 8.566260e-04	k: 1833	n:2240000
PYGO2   2240000 perm   2241 sec   (1000 perm/sec)   p_kst 8.183036e-04   p_cons 4.818263e-01   p_joint 4.513393e-04

Joint ci ratio: 1.230748e-01	ci left: 4.229263e-04	ci right 4.788169e-04	k: 1013	n:2250000
Cons ci ratio: 2.709797e-03	ci left: 4.812309e-01	ci right 4.825371e-01	k: 1084239	n:2250000
KS ci ratio: 9.139780e-02	ci left: 7.795460e-04	ci right 8.546372e-04	k: 1837	n:2250000
PYGO2   2250000 perm   2259 sec   (996 perm/sec)   p_kst 8.164444e-04   p_cons 4.818840e-01   p_joint 4.502222e-04

Joint ci ratio: 1.227725e-01	ci left: 4.231993e-04	ci right 4.789787e-04	k: 1018	n:2260000
Cons ci ratio: 2.703704e-03	ci left: 4.812492e-01	ci right 4.825526e-01	k: 1089096	n:2260000
KS ci ratio: 9.117483e-02	ci left: 7.799881e-04	ci right 8.549288e-04	k: 1846	n:2260000
PYGO2   2260000 perm   2278 sec   (992 perm/sec)   p_kst 8.168142e-04   p_cons 4.819009e-01   p_joint 4.504425e-04

Joint ci ratio: 1.224126e-01	ci left: 4.238971e-04	ci right 4.795928e-04	k: 1024	n:2270000
Cons ci ratio: 2.697751e-03	ci left: 4.812489e-01	ci right 4.825494e-01	k: 1093911	n:2270000
KS ci ratio: 9.088001e-02	ci left: 7.817181e-04	ci right 8.565692e-04	k: 1858	n:2270000
PYGO2   2270000 perm   2296 sec   (989 perm/sec)   p_kst 8.185022e-04   p_cons 4.818991e-01   p_joint 4.511013e-04

Joint ci ratio: 1.222338e-01	ci left: 4.233135e-04	ci right 4.788454e-04	k: 1027	n:2280000
Cons ci ratio: 2.691907e-03	ci left: 4.812359e-01	ci right 4.825335e-01	k: 1098697	n:2280000
KS ci ratio: 9.073375e-02	ci left: 7.808613e-04	ci right 8.555037e-04	k: 1864	n:2280000
PYGO2   2280000 perm   2315 sec   (985 perm/sec)   p_kst 8.175439e-04   p_cons 4.818846e-01   p_joint 4.504386e-04

Joint ci ratio: 1.218197e-01	ci left: 4.244284e-04	ci right 4.799044e-04	k: 1034	n:2290000
Cons ci ratio: 2.686107e-03	ci left: 4.812216e-01	ci right 4.825164e-01	k: 1103480	n:2290000
KS ci ratio: 9.046729e-02	ci left: 7.821461e-04	ci right 8.566801e-04	k: 1875	n:2290000
PYGO2   2290000 perm   2334 sec   (981 perm/sec)   p_kst 8.187773e-04   p_cons 4.818690e-01   p_joint 4.515284e-04

Joint ci ratio: 1.217610e-01	ci left: 4.230046e-04	ci right 4.782659e-04	k: 1035	n:2300000
Cons ci ratio: 2.680244e-03	ci left: 4.812262e-01	ci right 4.825182e-01	k: 1108306	n:2300000
KS ci ratio: 9.034704e-02	ci left: 7.808702e-04	ci right 8.551785e-04	k: 1880	n:2300000
PYGO2   2300000 perm   2352 sec   (978 perm/sec)   p_kst 8.173913e-04   p_cons 4.818722e-01   p_joint 4.500000e-04

Joint ci ratio: 1.213517e-01	ci left: 4.241116e-04	ci right 4.793178e-04	k: 1042	n:2310000
Cons ci ratio: 2.674480e-03	ci left: 4.812195e-01	ci right 4.825087e-01	k: 1113106	n:2310000
KS ci ratio: 9.013165e-02	ci left: 7.812980e-04	ci right 8.554604e-04	k: 1889	n:2310000
PYGO2   2310000 perm   2371 sec   (974 perm/sec)   p_kst 8.177489e-04   p_cons 4.818641e-01   p_joint 4.510823e-04

Joint ci ratio: 1.211197e-01	ci left: 4.239554e-04	ci right 4.790282e-04	k: 1046	n:2320000
Cons ci ratio: 2.668633e-03	ci left: 4.812353e-01	ci right 4.825217e-01	k: 1117958	n:2320000
KS ci ratio: 8.991780e-02	ci left: 7.817223e-04	ci right 8.557397e-04	k: 1898	n:2320000
PYGO2   2320000 perm   2390 sec   (971 perm/sec)   p_kst 8.181034e-04   p_cons 4.818784e-01   p_joint 4.508621e-04

Joint ci ratio: 1.210042e-01	ci left: 4.229682e-04	ci right 4.778566e-04	k: 1048	n:2330000
Cons ci ratio: 2.662904e-03	ci left: 4.812359e-01	ci right 4.825195e-01	k: 1122775	n:2330000
KS ci ratio: 8.972900e-02	ci left: 7.817237e-04	ci right 8.555776e-04	k: 1906	n:2330000
PYGO2   2330000 perm   2409 sec   (967 perm/sec)   p_kst 8.180258e-04   p_cons 4.818777e-01   p_joint 4.497854e-04

Joint ci ratio: 1.208891e-01	ci left: 4.219894e-04	ci right 4.766951e-04	k: 1050	n:2340000
Cons ci ratio: 2.657174e-03	ci left: 4.812438e-01	ci right 4.825246e-01	k: 1127609	n:2340000
KS ci ratio: 8.956479e-02	ci left: 7.813073e-04	ci right 8.549798e-04	k: 1913	n:2340000
PYGO2   2340000 perm   2428 sec   (964 perm/sec)   p_kst 8.175214e-04   p_cons 4.818842e-01   p_joint 4.487179e-04

Joint ci ratio: 1.208892e-01	ci left: 4.201937e-04	ci right 4.746666e-04	k: 1050	n:2350000
Cons ci ratio: 2.651496e-03	ci left: 4.812486e-01	ci right 4.825267e-01	k: 1132436	n:2350000
KS ci ratio: 8.947143e-02	ci left: 7.796466e-04	ci right 8.530818e-04	k: 1917	n:2350000
PYGO2   2350000 perm   2447 sec   (961 perm/sec)   p_kst 8.157447e-04   p_cons 4.818877e-01   p_joint 4.468085e-04

Joint ci ratio: 1.204316e-01	ci left: 4.217008e-04	ci right 4.761474e-04	k: 1058	n:2360000
Cons ci ratio: 2.645986e-03	ci left: 4.812284e-01	ci right 4.825038e-01	k: 1137204	n:2360000
KS ci ratio: 8.914656e-02	ci left: 7.821428e-04	ci right 8.555317e-04	k: 1931	n:2360000
PYGO2   2360000 perm   2466 sec   (957 perm/sec)   p_kst 8.182203e-04   p_cons 4.818661e-01   p_joint 4.483051e-04

Joint ci ratio: 1.201483e-01	ci left: 4.219677e-04	ci right 4.763115e-04	k: 1063	n:2370000
Cons ci ratio: 2.640270e-03	ci left: 4.812540e-01	ci right 4.825267e-01	k: 1142080	n:2370000
KS ci ratio: 8.893963e-02	ci left: 7.825555e-04	ci right 8.558039e-04	k: 1940	n:2370000
PYGO2   2370000 perm   2484 sec   (954 perm/sec)   p_kst 8.185654e-04   p_cons 4.818903e-01   p_joint 4.485232e-04

Joint ci ratio: 1.199793e-01	ci left: 4.214173e-04	ci right 4.756085e-04	k: 1066	n:2380000
Cons ci ratio: 2.634653e-03	ci left: 4.812675e-01	ci right 4.825376e-01	k: 1146928	n:2380000
KS ci ratio: 8.873413e-02	ci left: 7.829650e-04	ci right 8.560735e-04	k: 1949	n:2380000
PYGO2   2380000 perm   2504 sec   (950 perm/sec)   p_kst 8.189076e-04   p_cons 4.819025e-01   p_joint 4.478992e-04

Joint ci ratio: 1.199232e-01	ci left: 4.200599e-04	ci right 4.740495e-04	k: 1067	n:2390000
Cons ci ratio: 2.629303e-03	ci left: 4.812370e-01	ci right 4.825044e-01	k: 1151671	n:2390000
KS ci ratio: 8.862064e-02	ci left: 7.817346e-04	ci right 8.546301e-04	k: 1954	n:2390000
PYGO2   2390000 perm   2523 sec   (947 perm/sec)   p_kst 8.175732e-04   p_cons 4.818707e-01   p_joint 4.464435e-04

Joint ci ratio: 1.194765e-01	ci left: 4.215432e-04	ci right 4.755074e-04	k: 1075	n:2400000
Cons ci ratio: 2.623755e-03	ci left: 4.812506e-01	ci right 4.825153e-01	k: 1156519	n:2400000
KS ci ratio: 8.832737e-02	ci left: 7.837742e-04	ci right 8.566056e-04	k: 1967	n:2400000
PYGO2   2400000 perm   2542 sec   (944 perm/sec)   p_kst 8.195833e-04   p_cons 4.818829e-01   p_joint 4.479167e-04

Joint ci ratio: 1.193103e-01	ci left: 4.210017e-04	ci right 4.748163e-04	k: 1078	n:2410000
Cons ci ratio: 2.618228e-03	ci left: 4.812669e-01	ci right 4.825290e-01	k: 1161374	n:2410000
KS ci ratio: 8.814839e-02	ci left: 7.837683e-04	ci right 8.564439e-04	k: 1975	n:2410000
PYGO2   2410000 perm   2561 sec   (941 perm/sec)   p_kst 8.195021e-04   p_cons 4.818979e-01   p_joint 4.473029e-04

Joint ci ratio: 1.191448e-01	ci left: 4.204647e-04	ci right 4.741309e-04	k: 1081	n:2420000
Cons ci ratio: 2.612743e-03	ci left: 4.812814e-01	ci right 4.825409e-01	k: 1166225	n:2420000
KS ci ratio: 8.799269e-02	ci left: 7.833585e-04	ci right 8.558612e-04	k: 1982	n:2420000
PYGO2   2420000 perm   2581 sec   (938 perm/sec)   p_kst 8.190083e-04   p_cons 4.819112e-01   p_joint 4.466942e-04

Joint ci ratio: 1.190899e-01	ci left: 4.191337e-04	ci right 4.726035e-04	k: 1082	n:2430000
Cons ci ratio: 2.607377e-03	ci left: 4.812798e-01	ci right 4.825367e-01	k: 1171037	n:2430000
KS ci ratio: 8.788203e-02	ci left: 7.821471e-04	ci right 8.544420e-04	k: 1987	n:2430000
PYGO2   2430000 perm   2600 sec   (935 perm/sec)   p_kst 8.176955e-04   p_cons 4.819082e-01   p_joint 4.452675e-04

Joint ci ratio: 1.187613e-01	ci left: 4.198018e-04	ci right 4.731987e-04	k: 1088	n:2440000
Cons ci ratio: 2.602039e-03	ci left: 4.812790e-01	ci right 4.825333e-01	k: 1175851	n:2440000
KS ci ratio: 8.766179e-02	ci left: 7.829500e-04	ci right 8.551284e-04	k: 1997	n:2440000
PYGO2   2440000 perm   2620 sec   (931 perm/sec)   p_kst 8.184426e-04   p_cons 4.819061e-01   p_joint 4.459016e-04

Joint ci ratio: 1.187615e-01	ci left: 4.180883e-04	ci right 4.712673e-04	k: 1088	n:2450000
Cons ci ratio: 2.596556e-03	ci left: 4.813125e-01	ci right 4.825643e-01	k: 1180749	n:2450000
KS ci ratio: 8.763999e-02	ci left: 7.801535e-04	ci right 8.520553e-04	k: 1998	n:2450000
PYGO2   2450000 perm   2640 sec   (928 perm/sec)   p_kst 8.155102e-04   p_cons 4.819384e-01   p_joint 4.440816e-04

Joint ci ratio: 1.187070e-01	ci left: 4.167832e-04	ci right 4.697702e-04	k: 1089	n:2460000
Cons ci ratio: 2.591105e-03	ci left: 4.813461e-01	ci right 4.825954e-01	k: 1185648	n:2460000
KS ci ratio: 8.753065e-02	ci left: 7.789701e-04	ci right 8.506687e-04	k: 2003	n:2460000
PYGO2   2460000 perm   2660 sec   (925 perm/sec)   p_kst 8.142276e-04   p_cons 4.819707e-01   p_joint 4.426829e-04

Joint ci ratio: 1.187072e-01	ci left: 4.150958e-04	ci right 4.678683e-04	k: 1089	n:2470000
Cons ci ratio: 2.585835e-03	ci left: 4.813512e-01	ci right 4.825979e-01	k: 1190477	n:2470000
KS ci ratio: 8.750895e-02	ci left: 7.762123e-04	ci right 8.476385e-04	k: 2004	n:2470000
PYGO2   2470000 perm   2679 sec   (922 perm/sec)   p_kst 8.113360e-04   p_cons 4.819745e-01   p_joint 4.408907e-04

Joint ci ratio: 1.184899e-01	ci left: 4.149870e-04	ci right 4.676425e-04	k: 1093	n:2480000
Cons ci ratio: 2.580604e-03	ci left: 4.813550e-01	ci right 4.825991e-01	k: 1195303	n:2480000
KS ci ratio: 8.729150e-02	ci left: 7.770266e-04	ci right 8.483409e-04	k: 2014	n:2480000
PYGO2   2480000 perm   2699 sec   (919 perm/sec)   p_kst 8.120968e-04   p_cons 4.819770e-01   p_joint 4.407258e-04

Joint ci ratio: 1.182739e-01	ci left: 4.148793e-04	ci right 4.674184e-04	k: 1097	n:2490000
Cons ci ratio: 2.575234e-03	ci left: 4.813916e-01	ci right 4.826333e-01	k: 1200211	n:2490000
KS ci ratio: 8.720506e-02	ci left: 7.754773e-04	ci right 8.465754e-04	k: 2018	n:2490000
PYGO2   2490000 perm   2719 sec   (916 perm/sec)   p_kst 8.104418e-04   p_cons 4.820124e-01   p_joint 4.405622e-04

Joint ci ratio: 1.180055e-01	ci left: 4.151607e-04	ci right 4.676078e-04	k: 1102	n:2500000
Cons ci ratio: 2.569949e-03	ci left: 4.814180e-01	ci right 4.826572e-01	k: 1205094	n:2500000
KS ci ratio: 8.696842e-02	ci left: 7.766796e-04	ci right 8.476849e-04	k: 2029	n:2500000
PYGO2   2500000 perm   2740 sec   (913 perm/sec)   p_kst 8.116000e-04   p_cons 4.820376e-01   p_joint 4.408000e-04

Joint ci ratio: 1.175798e-01	ci left: 4.166000e-04	ci right 4.690259e-04	k: 1110	n:2510000
Cons ci ratio: 2.564583e-03	ci left: 4.814661e-01	ci right 4.827028e-01	k: 1210032	n:2510000
KS ci ratio: 8.673369e-02	ci left: 7.778726e-04	ci right 8.487853e-04	k: 2040	n:2510000
PYGO2   2510000 perm   2760 sec   (910 perm/sec)   p_kst 8.127490e-04   p_cons 4.820845e-01   p_joint 4.422311e-04

Joint ci ratio: 1.173687e-01	ci left: 4.164875e-04	ci right 4.687986e-04	k: 1114	n:2520000
Cons ci ratio: 2.559410e-03	ci left: 4.814829e-01	ci right 4.827172e-01	k: 1214892	n:2520000
KS ci ratio: 8.660652e-02	ci left: 7.771151e-04	ci right 8.478496e-04	k: 2046	n:2520000
PYGO2   2520000 perm   2780 sec   (907 perm/sec)   p_kst 8.119048e-04   p_cons 4.821000e-01   p_joint 4.420635e-04

Joint ci ratio: 1.173162e-01	ci left: 4.152249e-04	ci right 4.673525e-04	k: 1115	n:2530000
Cons ci ratio: 2.554375e-03	ci left: 4.814786e-01	ci right 4.827104e-01	k: 1219699	n:2530000
KS ci ratio: 8.652210e-02	ci left: 7.755903e-04	ci right 8.461137e-04	k: 2050	n:2530000
PYGO2   2530000 perm   2800 sec   (904 perm/sec)   p_kst 8.102767e-04   p_cons 4.820945e-01   p_joint 4.407115e-04

Joint ci ratio: 1.171066e-01	ci left: 4.151188e-04	ci right 4.671335e-04	k: 1119	n:2540000
Cons ci ratio: 2.549374e-03	ci left: 4.814735e-01	ci right 4.827029e-01	k: 1224504	n:2540000
KS ci ratio: 8.635385e-02	ci left: 7.756183e-04	ci right 8.460002e-04	k: 2058	n:2540000
PYGO2   2540000 perm   2820 sec   (901 perm/sec)   p_kst 8.102362e-04   p_cons 4.820882e-01   p_joint 4.405512e-04

Joint ci ratio: 1.168460e-01	ci left: 4.153943e-04	ci right 4.673197e-04	k: 1124	n:2550000
Cons ci ratio: 2.544358e-03	ci left: 4.814771e-01	ci right 4.827041e-01	k: 1229331	n:2550000
KS ci ratio: 8.618658e-02	ci left: 7.756462e-04	ci right 8.458875e-04	k: 2066	n:2550000
PYGO2   2550000 perm   2841 sec   (898 perm/sec)   p_kst 8.101961e-04   p_cons 4.820906e-01   p_joint 4.407843e-04

Joint ci ratio: 1.167423e-01	ci left: 4.145301e-04	ci right 4.662983e-04	k: 1126	n:2560000
Cons ci ratio: 2.539519e-03	ci left: 4.814518e-01	ci right 4.826764e-01	k: 1234084	n:2560000
KS ci ratio: 8.602028e-02	ci left: 7.756741e-04	ci right 8.457755e-04	k: 2074	n:2560000
PYGO2   2560000 perm   2862 sec   (895 perm/sec)   p_kst 8.101563e-04   p_cons 4.820641e-01   p_joint 4.398438e-04

Joint ci ratio: 1.166389e-01	ci left: 4.136726e-04	ci right 4.652849e-04	k: 1128	n:2570000
Cons ci ratio: 2.534551e-03	ci left: 4.814574e-01	ci right 4.826796e-01	k: 1238916	n:2570000
KS ci ratio: 8.591688e-02	ci left: 7.745596e-04	ci right 8.444719e-04	k: 2079	n:2570000
PYGO2   2570000 perm   2882 sec   (892 perm/sec)   p_kst 8.089494e-04   p_cons 4.820685e-01   p_joint 4.389105e-04

Joint ci ratio: 1.163302e-01	ci left: 4.143271e-04	ci right 4.658748e-04	k: 1134	n:2580000
Cons ci ratio: 2.529640e-03	ci left: 4.814576e-01	ci right 4.826774e-01	k: 1243734	n:2580000
KS ci ratio: 8.577269e-02	ci left: 7.742123e-04	ci right 8.439702e-04	k: 2086	n:2580000
PYGO2   2580000 perm   2903 sec   (889 perm/sec)   p_kst 8.085271e-04   p_cons 4.820674e-01   p_joint 4.395349e-04

Joint ci ratio: 1.162279e-01	ci left: 4.134771e-04	ci right 4.648707e-04	k: 1136	n:2590000
Cons ci ratio: 2.524671e-03	ci left: 4.814747e-01	ci right 4.826922e-01	k: 1248596	n:2590000
KS ci ratio: 8.569068e-02	ci left: 7.727344e-04	ci right 8.422892e-04	k: 2090	n:2590000
PYGO2   2590000 perm   2924 sec   (886 perm/sec)   p_kst 8.069498e-04   p_cons 4.820834e-01   p_joint 4.386100e-04

Joint ci ratio: 1.160749e-01	ci left: 4.130071e-04	ci right 4.642701e-04	k: 1139	n:2600000
Cons ci ratio: 2.519669e-03	ci left: 4.815040e-01	ci right 4.827191e-01	k: 1253490	n:2600000
KS ci ratio: 8.560890e-02	ci left: 7.712678e-04	ci right 8.406210e-04	k: 2094	n:2600000
PYGO2   2600000 perm   2945 sec   (883 perm/sec)   p_kst 8.053846e-04   p_cons 4.821115e-01   p_joint 4.380769e-04

Joint ci ratio: 1.157706e-01	ci left: 4.136569e-04	ci right 4.648567e-04	k: 1145	n:2610000
Cons ci ratio: 2.514730e-03	ci left: 4.815266e-01	ci right 4.827394e-01	k: 1258367	n:2610000
KS ci ratio: 8.544592e-02	ci left: 7.713123e-04	ci right 8.405309e-04	k: 2102	n:2610000
PYGO2   2610000 perm   2966 sec   (880 perm/sec)   p_kst 8.053640e-04   p_cons 4.821330e-01   p_joint 4.386973e-04

Joint ci ratio: 1.156194e-01	ci left: 4.131900e-04	ci right 4.642606e-04	k: 1148	n:2620000
Cons ci ratio: 2.509973e-03	ci left: 4.815184e-01	ci right 4.827289e-01	k: 1263164	n:2620000
KS ci ratio: 8.522327e-02	ci left: 7.724773e-04	ci right 8.416108e-04	k: 2113	n:2620000
PYGO2   2620000 perm   2986 sec   (877 perm/sec)   p_kst 8.064885e-04   p_cons 4.821237e-01   p_joint 4.381679e-04

Joint ci ratio: 1.150202e-01	ci left: 4.160501e-04	ci right 4.671896e-04	k: 1160	n:2630000
Cons ci ratio: 2.505248e-03	ci left: 4.815092e-01	ci right 4.827174e-01	k: 1267958	n:2630000
KS ci ratio: 8.494238e-02	ci left: 7.747501e-04	ci right 8.438472e-04	k: 2127	n:2630000
PYGO2   2630000 perm   3007 sec   (875 perm/sec)   p_kst 8.087452e-04   p_cons 4.821133e-01   p_joint 4.410646e-04

Joint ci ratio: 1.146258e-01	ci left: 4.174174e-04	ci right 4.685372e-04	k: 1168	n:2640000
Cons ci ratio: 2.500467e-03	ci left: 4.815168e-01	ci right 4.827227e-01	k: 1272796	n:2640000
KS ci ratio: 8.478316e-02	ci left: 7.747814e-04	ci right 8.437454e-04	k: 2135	n:2640000
PYGO2   2640000 perm   3028 sec   (872 perm/sec)   p_kst 8.087121e-04   p_cons 4.821197e-01   p_joint 4.424242e-04

Joint ci ratio: 1.143815e-01	ci left: 4.176750e-04	ci right 4.687100e-04	k: 1173	n:2650000
Cons ci ratio: 2.495666e-03	ci left: 4.815337e-01	ci right 4.827373e-01	k: 1277659	n:2650000
KS ci ratio: 8.462484e-02	ci left: 7.748126e-04	ci right 8.436442e-04	k: 2143	n:2650000
PYGO2   2650000 perm   3050 sec   (869 perm/sec)   p_kst 8.086792e-04   p_cons 4.821355e-01   p_joint 4.426415e-04

Joint ci ratio: 1.142842e-01	ci left: 4.168352e-04	ci right 4.677213e-04	k: 1175	n:2660000
Cons ci ratio: 2.490988e-03	ci left: 4.815313e-01	ci right 4.827326e-01	k: 1282471	n:2660000
KS ci ratio: 8.442814e-02	ci left: 7.755798e-04	ci right 8.443115e-04	k: 2153	n:2660000
PYGO2   2660000 perm   3072 sec   (866 perm/sec)   p_kst 8.093985e-04   p_cons 4.821320e-01   p_joint 4.417293e-04

Joint ci ratio: 1.140904e-01	ci left: 4.167293e-04	ci right 4.675104e-04	k: 1179	n:2670000
Cons ci ratio: 2.486220e-03	ci left: 4.815522e-01	ci right 4.827512e-01	k: 1287345	n:2670000
KS ci ratio: 8.429131e-02	ci left: 7.752414e-04	ci right 8.438263e-04	k: 2160	n:2670000
PYGO2   2670000 perm   3093 sec   (863 perm/sec)   p_kst 8.089888e-04   p_cons 4.821517e-01   p_joint 4.415730e-04

Joint ci ratio: 1.138494e-01	ci left: 4.169868e-04	ci right 4.676848e-04	k: 1184	n:2680000
Cons ci ratio: 2.481669e-03	ci left: 4.815348e-01	ci right 4.827317e-01	k: 1292117	n:2680000
KS ci ratio: 8.407754e-02	ci left: 7.763668e-04	ci right 8.448685e-04	k: 2171	n:2680000
PYGO2   2680000 perm   3114 sec   (861 perm/sec)   p_kst 8.100746e-04   p_cons 4.821332e-01   p_joint 4.417910e-04

Joint ci ratio: 1.135146e-01	ci left: 4.179650e-04	ci right 4.686224e-04	k: 1191	n:2690000
Cons ci ratio: 2.477116e-03	ci left: 4.815232e-01	ci right 4.827178e-01	k: 1296904	n:2690000
KS ci ratio: 8.386540e-02	ci left: 7.774840e-04	ci right 8.459028e-04	k: 2182	n:2690000
PYGO2   2690000 perm   3136 sec   (858 perm/sec)   p_kst 8.111524e-04   p_cons 4.821204e-01   p_joint 4.427509e-04

Joint ci ratio: 1.132299e-01	ci left: 4.185762e-04	ci right 4.691720e-04	k: 1197	n:2700000
Cons ci ratio: 2.472660e-03	ci left: 4.814968e-01	ci right 4.826892e-01	k: 1301651	n:2700000
KS ci ratio: 8.365486e-02	ci left: 7.785932e-04	ci right 8.469292e-04	k: 2193	n:2700000
PYGO2   2700000 perm   3157 sec   (855 perm/sec)   p_kst 8.122222e-04   p_cons 4.820930e-01   p_joint 4.433333e-04

Joint ci ratio: 1.129474e-01	ci left: 4.191830e-04	ci right 4.697173e-04	k: 1203	n:2710000
Cons ci ratio: 2.468110e-03	ci left: 4.814946e-01	ci right 4.826848e-01	k: 1306463	n:2710000
KS ci ratio: 8.350276e-02	ci left: 7.786105e-04	ci right 8.468177e-04	k: 2201	n:2710000
PYGO2   2710000 perm   3179 sec   (853 perm/sec)   p_kst 8.121771e-04   p_cons 4.820897e-01   p_joint 4.439114e-04

Joint ci ratio: 1.125275e-01	ci left: 4.208574e-04	ci right 4.713925e-04	k: 1212	n:2720000
Cons ci ratio: 2.463525e-03	ci left: 4.815045e-01	ci right 4.826926e-01	k: 1311308	n:2720000
KS ci ratio: 8.320091e-02	ci left: 7.815078e-04	ci right 8.497093e-04	k: 2217	n:2720000
PYGO2   2720000 perm   3201 sec   (850 perm/sec)   p_kst 8.150735e-04   p_cons 4.820985e-01   p_joint 4.455882e-04

Joint ci ratio: 1.123424e-01	ci left: 4.207398e-04	ci right 4.711722e-04	k: 1216	n:2730000
Cons ci ratio: 2.459157e-03	ci left: 4.814756e-01	ci right 4.826614e-01	k: 1316047	n:2730000
KS ci ratio: 8.306995e-02	ci left: 7.811559e-04	ci right 8.492142e-04	k: 2224	n:2730000
PYGO2   2730000 perm   3223 sec   (847 perm/sec)   p_kst 8.146520e-04   p_cons 4.820685e-01   p_joint 4.454212e-04

Joint ci ratio: 1.119292e-01	ci left: 4.223968e-04	ci right 4.728293e-04	k: 1225	n:2740000
Cons ci ratio: 2.454608e-03	ci left: 4.814885e-01	ci right 4.826721e-01	k: 1320900	n:2740000
KS ci ratio: 8.286532e-02	ci left: 7.822363e-04	ci right 8.502127e-04	k: 2235	n:2740000
PYGO2   2740000 perm   3245 sec   (844 perm/sec)   p_kst 8.156934e-04   p_cons 4.820803e-01   p_joint 4.470803e-04

Joint ci ratio: 1.117471e-01	ci left: 4.222747e-04	ci right 4.726051e-04	k: 1229	n:2750000
Cons ci ratio: 2.450142e-03	ci left: 4.814893e-01	ci right 4.826708e-01	k: 1325720	n:2750000
KS ci ratio: 8.271748e-02	ci left: 7.822406e-04	ci right 8.500903e-04	k: 2243	n:2750000
PYGO2   2750000 perm   3267 sec   (842 perm/sec)   p_kst 8.156364e-04   p_cons 4.820800e-01   p_joint 4.469091e-04

Joint ci ratio: 1.116111e-01	ci left: 4.218013e-04	ci right 4.720101e-04	k: 1232	n:2760000
Cons ci ratio: 2.445529e-03	ci left: 4.815252e-01	ci right 4.827046e-01	k: 1330637	n:2760000
KS ci ratio: 8.257043e-02	ci left: 7.822451e-04	ci right 8.499687e-04	k: 2251	n:2760000
PYGO2   2760000 perm   3289 sec   (839 perm/sec)   p_kst 8.155797e-04   p_cons 4.821149e-01   p_joint 4.463768e-04

Joint ci ratio: 1.115659e-01	ci left: 4.206295e-04	ci right 4.706772e-04	k: 1233	n:2770000
Cons ci ratio: 2.441017e-03	ci left: 4.815453e-01	ci right 4.827226e-01	k: 1335511	n:2770000
KS ci ratio: 8.247897e-02	ci left: 7.811889e-04	ci right 8.487426e-04	k: 2256	n:2770000
PYGO2   2770000 perm   3311 sec   (837 perm/sec)   p_kst 8.144404e-04   p_cons 4.821339e-01   p_joint 4.451264e-04

Joint ci ratio: 1.112060e-01	ci left: 4.219140e-04	ci right 4.719419e-04	k: 1241	n:2780000
Cons ci ratio: 2.436641e-03	ci left: 4.815427e-01	ci right 4.827178e-01	k: 1340322	n:2780000
KS ci ratio: 8.231500e-02	ci left: 7.815496e-04	ci right 8.489936e-04	k: 2265	n:2780000
PYGO2   2780000 perm   3333 sec   (834 perm/sec)   p_kst 8.147482e-04   p_cons 4.821302e-01   p_joint 4.464029e-04

Joint ci ratio: 1.109828e-01	ci left: 4.221441e-04	ci right 4.720923e-04	k: 1246	n:2790000
Cons ci ratio: 2.432204e-03	ci left: 4.815572e-01	ci right 4.827303e-01	k: 1345181	n:2790000
KS ci ratio: 8.206180e-02	ci left: 7.836631e-04	ci right 8.510716e-04	k: 2279	n:2790000
PYGO2   2790000 perm   3355 sec   (831 perm/sec)   p_kst 8.168459e-04   p_cons 4.821437e-01   p_joint 4.465950e-04

Joint ci ratio: 1.108052e-01	ci left: 4.220254e-04	ci right 4.718744e-04	k: 1250	n:2800000
Cons ci ratio: 2.427917e-03	ci left: 4.815460e-01	ci right 4.827169e-01	k: 1349968	n:2800000
KS ci ratio: 8.195407e-02	ci left: 7.829632e-04	ci right 8.502189e-04	k: 2285	n:2800000
PYGO2   2800000 perm   3378 sec   (829 perm/sec)   p_kst 8.160714e-04   p_cons 4.821314e-01   p_joint 4.464286e-04

Joint ci ratio: 1.105845e-01	ci left: 4.222536e-04	ci right 4.720237e-04	k: 1255	n:2810000
Cons ci ratio: 2.423709e-03	ci left: 4.815231e-01	ci right 4.826919e-01	k: 1354722	n:2810000
KS ci ratio: 8.177538e-02	ci left: 7.836628e-04	ci right 8.508247e-04	k: 2295	n:2810000
PYGO2   2810000 perm   3400 sec   (826 perm/sec)   p_kst 8.167260e-04   p_cons 4.821075e-01   p_joint 4.466192e-04

Joint ci ratio: 1.103650e-01	ci left: 4.224803e-04	ci right 4.721719e-04	k: 1260	n:2820000
Cons ci ratio: 2.419367e-03	ci left: 4.815326e-01	ci right 4.826994e-01	k: 1359567	n:2820000
KS ci ratio: 8.156246e-02	ci left: 7.850523e-04	ci right 8.521498e-04	k: 2307	n:2820000
PYGO2   2820000 perm   3423 sec   (824 perm/sec)   p_kst 8.180851e-04   p_cons 4.821160e-01   p_joint 4.468085e-04

Joint ci ratio: 1.102776e-01	ci left: 4.216746e-04	ci right 4.712297e-04	k: 1262	n:2830000
Cons ci ratio: 2.415151e-03	ci left: 4.815209e-01	ci right 4.826855e-01	k: 1364352	n:2830000
KS ci ratio: 8.149193e-02	ci left: 7.836628e-04	ci right 8.505810e-04	k: 2311	n:2830000
PYGO2   2830000 perm   3446 sec   (821 perm/sec)   p_kst 8.166078e-04   p_cons 4.821032e-01   p_joint 4.459364e-04

Joint ci ratio: 1.101905e-01	ci left: 4.208747e-04	ci right 4.702941e-04	k: 1264	n:2840000
Cons ci ratio: 2.410846e-03	ci left: 4.815321e-01	ci right 4.826947e-01	k: 1369202	n:2840000
KS ci ratio: 8.135131e-02	ci left: 7.836630e-04	ci right 8.504602e-04	k: 2319	n:2840000
PYGO2   2840000 perm   3468 sec   (819 perm/sec)   p_kst 8.165493e-04   p_cons 4.821134e-01   p_joint 4.450704e-04

Joint ci ratio: 1.099300e-01	ci left: 4.214452e-04	ci right 4.708071e-04	k: 1270	n:2850000
Cons ci ratio: 2.406662e-03	ci left: 4.815229e-01	ci right 4.826835e-01	k: 1373994	n:2850000
KS ci ratio: 8.119396e-02	ci left: 7.840070e-04	ci right 8.506982e-04	k: 2328	n:2850000
PYGO2   2850000 perm   3491 sec   (816 perm/sec)   p_kst 8.168421e-04   p_cons 4.821032e-01   p_joint 4.456140e-04

Joint ci ratio: 1.095856e-01	ci left: 4.226921e-04	ci right 4.720349e-04	k: 1278	n:2860000
Cons ci ratio: 2.402572e-03	ci left: 4.814987e-01	ci right 4.826573e-01	k: 1378743	n:2860000
KS ci ratio: 8.098554e-02	ci left: 7.853765e-04	ci right 8.520045e-04	k: 2340	n:2860000
PYGO2   2860000 perm   3513 sec   (814 perm/sec)   p_kst 8.181818e-04   p_cons 4.820780e-01   p_joint 4.468531e-04

Joint ci ratio: 1.094147e-01	ci left: 4.225748e-04	ci right 4.718220e-04	k: 1282	n:2870000
Cons ci ratio: 2.398345e-03	ci left: 4.815075e-01	ci right 4.826640e-01	k: 1383586	n:2870000
KS ci ratio: 8.081309e-02	ci left: 7.860538e-04	ci right 8.525907e-04	k: 2350	n:2870000
PYGO2   2870000 perm   3536 sec   (812 perm/sec)   p_kst 8.188153e-04   p_cons 4.820857e-01   p_joint 4.466899e-04

Joint ci ratio: 1.090751e-01	ci left: 4.238094e-04	ci right 4.730374e-04	k: 1290	n:2880000
Cons ci ratio: 2.394143e-03	ci left: 4.815158e-01	ci right 4.826703e-01	k: 1388428	n:2880000
KS ci ratio: 8.057346e-02	ci left: 7.880875e-04	ci right 8.545894e-04	k: 2364	n:2880000
PYGO2   2880000 perm   3559 sec   (809 perm/sec)   p_kst 8.208333e-04   p_cons 4.820931e-01   p_joint 4.479167e-04

Joint ci ratio: 1.088645e-01	ci left: 4.240259e-04	ci right 4.731778e-04	k: 1295	n:2890000
Cons ci ratio: 2.389921e-03	ci left: 4.815328e-01	ci right 4.826853e-01	k: 1393295	n:2890000
KS ci ratio: 8.042058e-02	ci left: 7.884121e-04	ci right 8.548092e-04	k: 2373	n:2890000
PYGO2   2890000 perm   3582 sec   (807 perm/sec)   p_kst 8.211073e-04   p_cons 4.821090e-01   p_joint 4.480969e-04

Joint ci ratio: 1.087806e-01	ci left: 4.232346e-04	ci right 4.722546e-04	k: 1297	n:2900000
Cons ci ratio: 2.385856e-03	ci left: 4.815213e-01	ci right 4.826718e-01	k: 1398080	n:2900000
KS ci ratio: 8.033607e-02	ci left: 7.873829e-04	ci right 8.536204e-04	k: 2378	n:2900000
PYGO2   2900000 perm   3605 sec   (804 perm/sec)   p_kst 8.200000e-04   p_cons 4.820966e-01   p_joint 4.472414e-04

Joint ci ratio: 1.086134e-01	ci left: 4.231174e-04	ci right 4.720437e-04	k: 1301	n:2910000
Cons ci ratio: 2.381761e-03	ci left: 4.815206e-01	ci right 4.826691e-01	k: 1402896	n:2910000
KS ci ratio: 8.021815e-02	ci left: 7.870343e-04	ci right 8.531408e-04	k: 2385	n:2910000
PYGO2   2910000 perm   3628 sec   (802 perm/sec)   p_kst 8.195876e-04   p_cons 4.820948e-01   p_joint 4.470790e-04

Joint ci ratio: 1.085301e-01	ci left: 4.223347e-04	ci right 4.711306e-04	k: 1303	n:2920000
Cons ci ratio: 2.377679e-03	ci left: 4.815216e-01	ci right 4.826682e-01	k: 1407717	n:2920000
KS ci ratio: 8.013428e-02	ci left: 7.860170e-04	ci right 8.519657e-04	k: 2390	n:2920000
PYGO2   2920000 perm   3651 sec   (800 perm/sec)   p_kst 8.184932e-04   p_cons 4.820949e-01   p_joint 4.462329e-04

Joint ci ratio: 1.081986e-01	ci left: 4.235497e-04	ci right 4.723270e-04	k: 1311	n:2930000
Cons ci ratio: 2.373531e-03	ci left: 4.815410e-01	ci right 4.826856e-01	k: 1412592	n:2930000
KS ci ratio: 7.995054e-02	ci left: 7.870135e-04	ci right 8.528874e-04	k: 2401	n:2930000
PYGO2   2930000 perm   3674 sec   (797 perm/sec)   p_kst 8.194539e-04   p_cons 4.821133e-01   p_joint 4.474403e-04

Joint ci ratio: 1.080341e-01	ci left: 4.234328e-04	ci right 4.721177e-04	k: 1315	n:2940000
Cons ci ratio: 2.369507e-03	ci left: 4.815385e-01	ci right 4.826812e-01	k: 1417403	n:2940000
KS ci ratio: 7.985090e-02	ci left: 7.863366e-04	ci right 8.520680e-04	k: 2407	n:2940000
PYGO2   2940000 perm   3697 sec   (795 perm/sec)   p_kst 8.187075e-04   p_cons 4.821099e-01   p_joint 4.472789e-04

Joint ci ratio: 1.079931e-01	ci left: 4.223273e-04	ci right 4.708655e-04	k: 1316	n:2950000
Cons ci ratio: 2.365422e-03	ci left: 4.815534e-01	ci right 4.826941e-01	k: 1422265	n:2950000
KS ci ratio: 7.978472e-02	ci left: 7.849999e-04	ci right 8.505627e-04	k: 2411	n:2950000
PYGO2   2950000 perm   3720 sec   (793 perm/sec)   p_kst 8.172881e-04   p_cons 4.821237e-01   p_joint 4.461017e-04

Joint ci ratio: 1.076259e-01	ci left: 4.238590e-04	ci right 4.723972e-04	k: 1325	n:2960000
Cons ci ratio: 2.361458e-03	ci left: 4.815468e-01	ci right 4.826856e-01	k: 1427064	n:2960000
KS ci ratio: 7.955410e-02	ci left: 7.869834e-04	ci right 8.525130e-04	k: 2425	n:2960000
PYGO2   2960000 perm   3744 sec   (791 perm/sec)   p_kst 8.192568e-04   p_cons 4.821162e-01   p_joint 4.476351e-04

Joint ci ratio: 1.074236e-01	ci left: 4.240701e-04	ci right 4.725354e-04	k: 1330	n:2970000
Cons ci ratio: 2.357483e-03	ci left: 4.815471e-01	ci right 4.826840e-01	k: 1431883	n:2970000
KS ci ratio: 7.942325e-02	ci left: 7.869737e-04	ci right 8.523898e-04	k: 2433	n:2970000
PYGO2   2970000 perm   3767 sec   (788 perm/sec)   p_kst 8.191919e-04   p_cons 4.821155e-01   p_joint 4.478114e-04

Joint ci ratio: 1.072224e-01	ci left: 4.242799e-04	ci right 4.726726e-04	k: 1335	n:2980000
Cons ci ratio: 2.353502e-03	ci left: 4.815527e-01	ci right 4.826876e-01	k: 1436718	n:2980000
KS ci ratio: 7.930931e-02	ci left: 7.866352e-04	ci right 8.519250e-04	k: 2440	n:2980000
PYGO2   2980000 perm   3791 sec   (786 perm/sec)   p_kst 8.187919e-04   p_cons 4.821201e-01   p_joint 4.479866e-04

Joint ci ratio: 1.070223e-01	ci left: 4.244883e-04	ci right 4.728088e-04	k: 1340	n:2990000
Cons ci ratio: 2.349502e-03	ci left: 4.815666e-01	ci right 4.826997e-01	k: 1441578	n:2990000
KS ci ratio: 7.911503e-02	ci left: 7.879382e-04	ci right 8.531686e-04	k: 2452	n:2990000
PYGO2   2990000 perm   3815 sec   (784 perm/sec)   p_kst 8.200669e-04   p_cons 4.821331e-01   p_joint 4.481605e-04

Joint ci ratio: 1.068233e-01	ci left: 4.246955e-04	ci right 4.729440e-04	k: 1345	n:3000000
Cons ci ratio: 2.345638e-03	ci left: 4.815558e-01	ci right 4.826869e-01	k: 1446364	n:3000000
KS ci ratio: 7.890616e-02	ci left: 7.895595e-04	ci right 8.547436e-04	k: 2465	n:3000000
PYGO2   3000000 perm   3838 sec   (782 perm/sec)   p_kst 8.216667e-04   p_cons 4.821213e-01   p_joint 4.483333e-04

Joint ci ratio: 1.067837e-01	ci left: 4.236079e-04	ci right 4.717138e-04	k: 1346	n:3010000
Cons ci ratio: 2.341723e-03	ci left: 4.815599e-01	ci right 4.826893e-01	k: 1451195	n:3010000
KS ci ratio: 7.882633e-02	ci left: 7.885647e-04	ci right 8.535978e-04	k: 2470	n:3010000
PYGO2   3010000 perm   3862 sec   (779 perm/sec)   p_kst 8.205980e-04   p_cons 4.821246e-01   p_joint 4.471761e-04

Joint ci ratio: 1.067046e-01	ci left: 4.228498e-04	ci right 4.708318e-04	k: 1348	n:3020000
Cons ci ratio: 2.337890e-03	ci left: 4.815509e-01	ci right 4.826783e-01	k: 1455986	n:3020000
KS ci ratio: 7.874674e-02	ci left: 7.875766e-04	ci right 8.524596e-04	k: 2475	n:3020000
PYGO2   3020000 perm   3886 sec   (777 perm/sec)   p_kst 8.195364e-04   p_cons 4.821146e-01   p_joint 4.463576e-04

Joint ci ratio: 1.065861e-01	ci left: 4.224179e-04	ci right 4.702944e-04	k: 1351	n:3030000
Cons ci ratio: 2.333995e-03	ci left: 4.815590e-01	ci right 4.826846e-01	k: 1460829	n:3030000
KS ci ratio: 7.868326e-02	ci left: 7.862714e-04	ci right 8.509923e-04	k: 2479	n:3030000
PYGO2   3030000 perm   3910 sec   (775 perm/sec)   p_kst 8.181518e-04   p_cons 4.821218e-01   p_joint 4.458746e-04

Joint ci ratio: 1.064681e-01	ci left: 4.219889e-04	ci right 4.697605e-04	k: 1354	n:3040000
Cons ci ratio: 2.330082e-03	ci left: 4.815753e-01	ci right 4.826991e-01	k: 1465697	n:3040000
KS ci ratio: 7.857247e-02	ci left: 7.859424e-04	ci right 8.505409e-04	k: 2486	n:3040000
PYGO2   3040000 perm   3934 sec   (773 perm/sec)   p_kst 8.177632e-04   p_cons 4.821372e-01   p_joint 4.453947e-04

Joint ci ratio: 1.063113e-01	ci left: 4.218819e-04	ci right 4.695667e-04	k: 1358	n:3050000
Cons ci ratio: 2.326281e-03	ci left: 4.815715e-01	ci right 4.826934e-01	k: 1470504	n:3050000
KS ci ratio: 7.844640e-02	ci left: 7.859370e-04	ci right 8.504267e-04	k: 2494	n:3050000
PYGO2   3050000 perm   3959 sec   (770 perm/sec)   p_kst 8.177049e-04   p_cons 4.821325e-01   p_joint 4.452459e-04

Joint ci ratio: 1.062332e-01	ci left: 4.211394e-04	ci right 4.687031e-04	k: 1360	n:3060000
Cons ci ratio: 2.322448e-03	ci left: 4.815786e-01	ci right 4.826986e-01	k: 1475344	n:3060000
KS ci ratio: 7.833660e-02	ci left: 7.856113e-04	ci right 8.499799e-04	k: 2501	n:3060000
PYGO2   3060000 perm   3983 sec   (768 perm/sec)   p_kst 8.173203e-04   p_cons 4.821386e-01   p_joint 4.444444e-04

Joint ci ratio: 1.059998e-01	ci left: 4.216702e-04	ci right 4.691826e-04	k: 1366	n:3070000
Cons ci ratio: 2.318525e-03	ci left: 4.816090e-01	ci right 4.827272e-01	k: 1480256	n:3070000
KS ci ratio: 7.819608e-02	ci left: 7.859265e-04	ci right 8.502002e-04	k: 2510	n:3070000
PYGO2   3070000 perm   4007 sec   (766 perm/sec)   p_kst 8.175896e-04   p_cons 4.821681e-01   p_joint 4.449511e-04

Joint ci ratio: 1.058065e-01	ci left: 4.218815e-04	ci right 4.693257e-04	k: 1371	n:3080000
Cons ci ratio: 2.314677e-03	ci left: 4.816275e-01	ci right 4.827439e-01	k: 1485132	n:3080000
KS ci ratio: 7.805630e-02	ci left: 7.862398e-04	ci right 8.504190e-04	k: 2519	n:3080000
PYGO2   3080000 perm   4031 sec   (764 perm/sec)   p_kst 8.178571e-04   p_cons 4.821857e-01   p_joint 4.451299e-04

Joint ci ratio: 1.056910e-01	ci left: 4.214614e-04	ci right 4.688034e-04	k: 1374	n:3090000
Cons ci ratio: 2.310853e-03	ci left: 4.816447e-01	ci right 4.827593e-01	k: 1490004	n:3090000
KS ci ratio: 7.793270e-02	ci left: 7.862338e-04	ci right 8.503063e-04	k: 2527	n:3090000
PYGO2   3090000 perm   4055 sec   (762 perm/sec)   p_kst 8.177994e-04   p_cons 4.822019e-01   p_joint 4.446602e-04

Joint ci ratio: 1.056143e-01	ci left: 4.207299e-04	ci right 4.679533e-04	k: 1376	n:3100000
Cons ci ratio: 2.307138e-03	ci left: 4.816423e-01	ci right 4.827551e-01	k: 1494816	n:3100000
KS ci ratio: 7.782504e-02	ci left: 7.859117e-04	ci right 8.498654e-04	k: 2534	n:3100000
PYGO2   3100000 perm   4080 sec   (760 perm/sec)   p_kst 8.174194e-04   p_cons 4.821987e-01   p_joint 4.438710e-04

Joint ci ratio: 1.054230e-01	ci left: 4.209424e-04	ci right 4.680988e-04	k: 1381	n:3110000
Cons ci ratio: 2.303354e-03	ci left: 4.816587e-01	ci right 4.827697e-01	k: 1499686	n:3110000
KS ci ratio: 7.770253e-02	ci left: 7.859070e-04	ci right 8.497551e-04	k: 2542	n:3110000
PYGO2   3110000 perm   4104 sec   (758 perm/sec)   p_kst 8.173633e-04   p_cons 4.822141e-01   p_joint 4.440514e-04

Joint ci ratio: 1.052328e-01	ci left: 4.211536e-04	ci right 4.682432e-04	k: 1386	n:3120000
Cons ci ratio: 2.299781e-03	ci left: 4.816332e-01	ci right 4.827425e-01	k: 1504426	n:3120000
KS ci ratio: 7.755018e-02	ci left: 7.865310e-04	ci right 8.502988e-04	k: 2552	n:3120000
PYGO2   3120000 perm   4129 sec   (756 perm/sec)   p_kst 8.179487e-04   p_cons 4.821878e-01   p_joint 4.442308e-04

Joint ci ratio: 1.050436e-01	ci left: 4.213635e-04	ci right 4.683867e-04	k: 1391	n:3130000
Cons ci ratio: 2.296093e-03	ci left: 4.816367e-01	ci right 4.827442e-01	k: 1509256	n:3130000
KS ci ratio: 7.742897e-02	ci left: 7.865245e-04	ci right 8.501876e-04	k: 2560	n:3130000
PYGO2   3130000 perm   4153 sec   (754 perm/sec)   p_kst 8.178914e-04   p_cons 4.821904e-01   p_joint 4.444089e-04

Joint ci ratio: 1.048931e-01	ci left: 4.212620e-04	ci right 4.682023e-04	k: 1395	n:3140000
Cons ci ratio: 2.292555e-03	ci left: 4.816112e-01	ci right 4.827169e-01	k: 1513995	n:3140000
KS ci ratio: 7.726318e-02	ci left: 7.874550e-04	ci right 8.510509e-04	k: 2571	n:3140000
PYGO2   3140000 perm   4177 sec   (752 perm/sec)   p_kst 8.187898e-04   p_cons 4.821640e-01   p_joint 4.442675e-04

Joint ci ratio: 1.048556e-01	ci left: 4.202338e-04	ci right 4.670417e-04	k: 1396	n:3150000
Cons ci ratio: 2.288926e-03	ci left: 4.816093e-01	ci right 4.827133e-01	k: 1518808	n:3150000
KS ci ratio: 7.718823e-02	ci left: 7.865118e-04	ci right 8.499672e-04	k: 2576	n:3150000
PYGO2   3150000 perm   4203 sec   (750 perm/sec)   p_kst 8.177778e-04   p_cons 4.821613e-01   p_joint 4.431746e-04

Joint ci ratio: 1.047806e-01	ci left: 4.195202e-04	ci right 4.662133e-04	k: 1398	n:3160000
Cons ci ratio: 2.285361e-03	ci left: 4.815970e-01	ci right 4.826992e-01	k: 1523588	n:3160000
KS ci ratio: 7.705378e-02	ci left: 7.868160e-04	ci right 8.501804e-04	k: 2585	n:3160000
PYGO2   3160000 perm   4228 sec   (747 perm/sec)   p_kst 8.180380e-04   p_cons 4.821481e-01   p_joint 4.424051e-04

Joint ci ratio: 1.046312e-01	ci left: 4.194256e-04	ci right 4.660374e-04	k: 1402	n:3170000
Cons ci ratio: 2.281760e-03	ci left: 4.815965e-01	ci right 4.826969e-01	k: 1528405	n:3170000
KS ci ratio: 7.694972e-02	ci left: 7.864997e-04	ci right 8.497492e-04	k: 2592	n:3170000
PYGO2   3170000 perm   4253 sec   (745 perm/sec)   p_kst 8.176656e-04   p_cons 4.821467e-01   p_joint 4.422713e-04

Joint ci ratio: 1.043341e-01	ci left: 4.205567e-04	ci right 4.671533e-04	k: 1410	n:3180000
Cons ci ratio: 2.278221e-03	ci left: 4.815862e-01	ci right 4.826849e-01	k: 1533191	n:3180000
KS ci ratio: 7.675749e-02	ci left: 7.880359e-04	ci right 8.512436e-04	k: 2605	n:3180000
PYGO2   3180000 perm   4278 sec   (743 perm/sec)   p_kst 8.191824e-04   p_cons 4.821355e-01   p_joint 4.433962e-04

Joint ci ratio: 1.041497e-01	ci left: 4.207648e-04	ci right 4.672971e-04	k: 1415	n:3190000
Cons ci ratio: 2.274730e-03	ci left: 4.815688e-01	ci right 4.826657e-01	k: 1537954	n:3190000
KS ci ratio: 7.665462e-02	ci left: 7.877178e-04	ci right 8.508115e-04	k: 2612	n:3190000
PYGO2   3190000 perm   4303 sec   (741 perm/sec)   p_kst 8.188088e-04   p_cons 4.821172e-01   p_joint 4.435737e-04

Joint ci ratio: 1.039297e-01	ci left: 4.212762e-04	ci right 4.677606e-04	k: 1421	n:3200000
Cons ci ratio: 2.271129e-03	ci left: 4.815793e-01	ci right 4.826745e-01	k: 1542806	n:3200000
KS ci ratio: 7.650834e-02	ci left: 7.883214e-04	ci right 8.513376e-04	k: 2622	n:3200000
PYGO2   3200000 perm   4328 sec   (739 perm/sec)   p_kst 8.193750e-04   p_cons 4.821269e-01   p_joint 4.440625e-04

Joint ci ratio: 1.038203e-01	ci left: 4.208741e-04	ci right 4.672623e-04	k: 1424	n:3210000
Cons ci ratio: 2.267541e-03	ci left: 4.815906e-01	ci right 4.826842e-01	k: 1547661	n:3210000
KS ci ratio: 7.645012e-02	ci left: 7.870878e-04	ci right 8.499554e-04	k: 2626	n:3210000
PYGO2   3210000 perm   4353 sec   (737 perm/sec)   p_kst 8.180685e-04   p_cons 4.821374e-01   p_joint 4.436137e-04

Joint ci ratio: 1.037112e-01	ci left: 4.204745e-04	ci right 4.667670e-04	k: 1427	n:3220000
Cons ci ratio: 2.263867e-03	ci left: 4.816246e-01	ci right 4.827164e-01	k: 1552589	n:3220000
KS ci ratio: 7.637751e-02	ci left: 7.861665e-04	ci right 8.488982e-04	k: 2631	n:3220000
PYGO2   3220000 perm   4378 sec   (735 perm/sec)   p_kst 8.170807e-04   p_cons 4.821705e-01   p_joint 4.431677e-04

Joint ci ratio: 1.035662e-01	ci left: 4.203790e-04	ci right 4.665924e-04	k: 1431	n:3230000
Cons ci ratio: 2.260430e-03	ci left: 4.816100e-01	ci right 4.827002e-01	k: 1557361	n:3230000
KS ci ratio: 7.624725e-02	ci left: 7.864658e-04	ci right 8.491096e-04	k: 2640	n:3230000
PYGO2   3230000 perm   4404 sec   (734 perm/sec)   p_kst 8.173375e-04   p_cons 4.821551e-01   p_joint 4.430341e-04

Joint ci ratio: 1.033859e-01	ci left: 4.205848e-04	ci right 4.667354e-04	k: 1436	n:3240000
Cons ci ratio: 2.256975e-03	ci left: 4.816030e-01	ci right 4.826915e-01	k: 1562157	n:3240000
KS ci ratio: 7.616081e-02	ci left: 7.858550e-04	ci right 8.483760e-04	k: 2646	n:3240000
PYGO2   3240000 perm   4429 sec   (732 perm/sec)   p_kst 8.166667e-04   p_cons 4.821472e-01   p_joint 4.432099e-04

Joint ci ratio: 1.033500e-01	ci left: 4.195904e-04	ci right 4.656149e-04	k: 1437	n:3250000
Cons ci ratio: 2.253550e-03	ci left: 4.815926e-01	ci right 4.826794e-01	k: 1566942	n:3250000
KS ci ratio: 7.607466e-02	ci left: 7.852480e-04	ci right 8.476469e-04	k: 2652	n:3250000
PYGO2   3250000 perm   4455 sec   (730 perm/sec)   p_kst 8.160000e-04   p_cons 4.821360e-01   p_joint 4.421538e-04

Joint ci ratio: 1.032066e-01	ci left: 4.194987e-04	ci right 4.654453e-04	k: 1441	n:3260000
Cons ci ratio: 2.250010e-03	ci left: 4.816114e-01	ci right 4.826966e-01	k: 1571822	n:3260000
KS ci ratio: 7.594594e-02	ci left: 7.855475e-04	ci right 8.478600e-04	k: 2661	n:3260000
PYGO2   3260000 perm   4481 sec   (727 perm/sec)   p_kst 8.162577e-04   p_cons 4.821540e-01   p_joint 4.420245e-04

Joint ci ratio: 1.030281e-01	ci left: 4.197054e-04	ci right 4.655904e-04	k: 1446	n:3270000
Cons ci ratio: 2.246649e-03	ci left: 4.815941e-01	ci right 4.826775e-01	k: 1576584	n:3270000
KS ci ratio: 7.584630e-02	ci left: 7.852453e-04	ci right 8.474485e-04	k: 2668	n:3270000
PYGO2   3270000 perm   4507 sec   (725 perm/sec)   p_kst 8.159021e-04   p_cons 4.821358e-01   p_joint 4.422018e-04

Joint ci ratio: 1.029215e-01	ci left: 4.193169e-04	ci right 4.651091e-04	k: 1449	n:3280000
Cons ci ratio: 2.243200e-03	ci left: 4.815997e-01	ci right 4.826815e-01	k: 1581421	n:3280000
KS ci ratio: 7.569045e-02	ci left: 7.861414e-04	ci right 8.482819e-04	k: 2679	n:3280000
PYGO2   3280000 perm   4533 sec   (724 perm/sec)   p_kst 8.167683e-04   p_cons 4.821405e-01   p_joint 4.417683e-04

Joint ci ratio: 1.027092e-01	ci left: 4.198192e-04	ci right 4.655660e-04	k: 1455	n:3290000
Cons ci ratio: 2.239860e-03	ci left: 4.815845e-01	ci right 4.826647e-01	k: 1586190	n:3290000
KS ci ratio: 7.553556e-02	ci left: 7.870321e-04	ci right 8.491102e-04	k: 2690	n:3290000
PYGO2   3290000 perm   4559 sec   (722 perm/sec)   p_kst 8.176292e-04   p_cons 4.821246e-01   p_joint 4.422492e-04

Joint ci ratio: 1.025333e-01	ci left: 4.200233e-04	ci right 4.657092e-04	k: 1460	n:3300000
Cons ci ratio: 2.236535e-03	ci left: 4.815695e-01	ci right 4.826481e-01	k: 1590959	n:3300000
KS ci ratio: 7.542354e-02	ci left: 7.870257e-04	ci right 8.490072e-04	k: 2698	n:3300000
PYGO2   3300000 perm   4586 sec   (720 perm/sec)   p_kst 8.175758e-04   p_cons 4.821088e-01   p_joint 4.424242e-04

Joint ci ratio: 1.022885e-01	ci left: 4.208150e-04	ci right 4.664712e-04	k: 1467	n:3310000
Cons ci ratio: 2.233156e-03	ci left: 4.815697e-01	ci right 4.826466e-01	k: 1595778	n:3310000
KS ci ratio: 7.527027e-02	ci left: 7.879086e-04	ci right 8.498280e-04	k: 2709	n:3310000
PYGO2   3310000 perm   4612 sec   (718 perm/sec)   p_kst 8.184290e-04   p_cons 4.821082e-01   p_joint 4.432024e-04

Joint ci ratio: 1.022189e-01	ci left: 4.201345e-04	ci right 4.656840e-04	k: 1469	n:3320000
Cons ci ratio: 2.229642e-03	ci left: 4.816039e-01	ci right 4.826792e-01	k: 1600710	n:3320000
KS ci ratio: 7.524258e-02	ci left: 7.861265e-04	ci right 8.478821e-04	k: 2711	n:3320000
PYGO2   3320000 perm   4638 sec   (716 perm/sec)   p_kst 8.165663e-04   p_cons 4.821416e-01   p_joint 4.424699e-04

Joint ci ratio: 1.020801e-01	ci left: 4.200433e-04	ci right 4.655174e-04	k: 1473	n:3330000
Cons ci ratio: 2.226158e-03	ci left: 4.816347e-01	ci right 4.827083e-01	k: 1605631	n:3330000
KS ci ratio: 7.513185e-02	ci left: 7.861229e-04	ci right 8.477834e-04	k: 2719	n:3330000
PYGO2   3330000 perm   4665 sec   (714 perm/sec)   p_kst 8.165165e-04   p_cons 4.821715e-01   p_joint 4.423423e-04

Joint ci ratio: 1.020456e-01	ci left: 4.190774e-04	ci right 4.644307e-04	k: 1474	n:3340000
Cons ci ratio: 2.222783e-03	ci left: 4.816445e-01	ci right 4.827166e-01	k: 1610483	n:3340000
KS ci ratio: 7.502161e-02	ci left: 7.861195e-04	ci right 8.476853e-04	k: 2727	n:3340000
PYGO2   3340000 perm   4691 sec   (712 perm/sec)   p_kst 8.164671e-04   p_cons 4.821805e-01   p_joint 4.413174e-04

Joint ci ratio: 1.017013e-01	ci left: 4.207355e-04	ci right 4.661054e-04	k: 1484	n:3350000
Cons ci ratio: 2.219450e-03	ci left: 4.816481e-01	ci right 4.827185e-01	k: 1615314	n:3350000
KS ci ratio: 7.478884e-02	ci left: 7.887525e-04	ci right 8.503246e-04	k: 2744	n:3350000
PYGO2   3350000 perm   4718 sec   (710 perm/sec)   p_kst 8.191045e-04   p_cons 4.821833e-01   p_joint 4.429851e-04

Joint ci ratio: 1.016329e-01	ci left: 4.200634e-04	ci right 4.653286e-04	k: 1486	n:3360000
Cons ci ratio: 2.216076e-03	ci left: 4.816644e-01	ci right 4.827333e-01	k: 1620188	n:3360000
KS ci ratio: 7.472086e-02	ci left: 7.878653e-04	ci right 8.493097e-04	k: 2749	n:3360000
PYGO2   3360000 perm   4744 sec   (708 perm/sec)   p_kst 8.181548e-04   p_cons 4.821988e-01   p_joint 4.422619e-04

Joint ci ratio: 1.013606e-01	ci left: 4.211306e-04	ci right 4.663819e-04	k: 1494	n:3370000
Cons ci ratio: 2.212737e-03	ci left: 4.816762e-01	ci right 4.827434e-01	k: 1625047	n:3370000
KS ci ratio: 7.454482e-02	ci left: 7.893130e-04	ci right 8.507191e-04	k: 2762	n:3370000
PYGO2   3370000 perm   4771 sec   (706 perm/sec)   p_kst 8.195846e-04   p_cons 4.822098e-01   p_joint 4.433234e-04

Joint ci ratio: 1.011241e-01	ci left: 4.219032e-04	ci right 4.671255e-04	k: 1501	n:3380000
Cons ci ratio: 2.209467e-03	ci left: 4.816757e-01	ci right 4.827414e-01	k: 1629865	n:3380000
KS ci ratio: 7.443713e-02	ci left: 7.893006e-04	ci right 8.506131e-04	k: 2770	n:3380000
PYGO2   3380000 perm   4797 sec   (705 perm/sec)   p_kst 8.195266e-04   p_cons 4.822086e-01   p_joint 4.440828e-04

Joint ci ratio: 1.009897e-01	ci left: 4.218088e-04	ci right 4.669573e-04	k: 1505	n:3390000
Cons ci ratio: 2.206260e-03	ci left: 4.816641e-01	ci right 4.827282e-01	k: 1634645	n:3390000
KS ci ratio: 7.431654e-02	ci left: 7.895777e-04	ci right 8.508081e-04	k: 2779	n:3390000
PYGO2   3390000 perm   4825 sec   (703 perm/sec)   p_kst 8.197640e-04   p_cons 4.821962e-01   p_joint 4.439528e-04

Joint ci ratio: 1.009227e-01	ci left: 4.211415e-04	ci right 4.661870e-04	k: 1507	n:3400000
Cons ci ratio: 2.203013e-03	ci left: 4.816649e-01	ci right 4.827275e-01	k: 1639467	n:3400000
KS ci ratio: 7.423649e-02	ci left: 7.889874e-04	ci right 8.501032e-04	k: 2785	n:3400000
PYGO2   3400000 perm   4853 sec   (701 perm/sec)   p_kst 8.191176e-04   p_cons 4.821962e-01   p_joint 4.432353e-04

Joint ci ratio: 1.008559e-01	ci left: 4.204782e-04	ci right 4.654212e-04	k: 1509	n:3410000
Cons ci ratio: 2.199736e-03	ci left: 4.816760e-01	ci right 4.827370e-01	k: 1644324	n:3410000
KS ci ratio: 7.415671e-02	ci left: 7.884005e-04	ci right 8.494024e-04	k: 2791	n:3410000
PYGO2   3410000 perm   4880 sec   (699 perm/sec)   p_kst 8.184751e-04   p_cons 4.822065e-01   p_joint 4.425220e-04

Joint ci ratio: 1.007559e-01	ci left: 4.201038e-04	ci right 4.649596e-04	k: 1512	n:3420000
Cons ci ratio: 2.196570e-03	ci left: 4.816647e-01	ci right 4.827242e-01	k: 1649105	n:3420000
KS ci ratio: 7.406393e-02	ci left: 7.881041e-04	ci right 8.490035e-04	k: 2798	n:3420000
PYGO2   3420000 perm   4907 sec   (697 perm/sec)   p_kst 8.181287e-04   p_cons 4.821944e-01   p_joint 4.421053e-04

Joint ci ratio: 1.005236e-01	ci left: 4.208685e-04	ci right 4.656962e-04	k: 1519	n:3430000
Cons ci ratio: 2.193313e-03	ci left: 4.816775e-01	ci right 4.827354e-01	k: 1653968	n:3430000
KS ci ratio: 7.394514e-02	ci left: 7.883818e-04	ci right 8.492007e-04	k: 2807	n:3430000
PYGO2   3430000 perm   4933 sec   (695 perm/sec)   p_kst 8.183673e-04   p_cons 4.822064e-01   p_joint 4.428571e-04

Joint ci ratio: 1.004245e-01	ci left: 4.204952e-04	ci right 4.652364e-04	k: 1522	n:3440000
Cons ci ratio: 2.190168e-03	ci left: 4.816681e-01	ci right 4.827244e-01	k: 1658755	n:3440000
KS ci ratio: 7.385315e-02	ci left: 7.880872e-04	ci right 8.488046e-04	k: 2814	n:3440000
PYGO2   3440000 perm   4960 sec   (693 perm/sec)   p_kst 8.180233e-04   p_cons 4.821962e-01   p_joint 4.424419e-04

Joint ci ratio: 1.003258e-01	ci left: 4.201241e-04	ci right 4.647793e-04	k: 1525	n:3450000
Cons ci ratio: 2.186883e-03	ci left: 4.816935e-01	ci right 4.827483e-01	k: 1663662	n:3450000
KS ci ratio: 7.376151e-02	ci left: 7.877945e-04	ci right 8.484107e-04	k: 2821	n:3450000
PYGO2   3450000 perm   4988 sec   (692 perm/sec)   p_kst 8.176812e-04   p_cons 4.822209e-01   p_joint 4.420290e-04

Joint ci ratio: 1.001291e-01	ci left: 4.206005e-04	ci right 4.652136e-04	k: 1531	n:3460000
Cons ci ratio: 2.183770e-03	ci left: 4.816829e-01	ci right 4.827362e-01	k: 1668445	n:3460000
KS ci ratio: 7.364416e-02	ci left: 7.880708e-04	ci right 8.486078e-04	k: 2830	n:3460000
PYGO2   3460000 perm   5016 sec   (690 perm/sec)   p_kst 8.179191e-04   p_cons 4.822095e-01   p_joint 4.424855e-04

Joint ci ratio: 9.996613e-02	ci left: 4.207933e-04	ci right 4.653498e-04	k: 1536	n:3470000
Cons ci ratio: 2.180660e-03	ci left: 4.816747e-01	ci right 4.827265e-01	k: 1673236	n:3470000
KS ci ratio: 7.352737e-02	ci left: 7.883457e-04	ci right 8.488036e-04	k: 2839	n:3470000
PYGO2   3470000 perm   5044 sec   (688 perm/sec)   p_kst 8.181556e-04   p_cons 4.822006e-01   p_joint 4.426513e-04

Outputting figure to mutsig2_images.part000000000141/PYGO2.2_1233_3470000_0.00081816_0.4822_0.00044265.png
                gene_name: PYGO2
               theta_stop: 0.100 
                    nperm: 3470000 
                     p_ks: 0.00082 
        ci_ks_bounds_left: 0.00079 
       ci_ks_bounds_right: 0.00085 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.00044 
     ci_joint_bounds_left: 0.00042 
    ci_joint_bounds_right: 0.00047 

Current progress: 95 percent done.
PYROXD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.019685e-01	ci left: 3.262466e-02	ci right 4.004861e-02	k: 362	n:10000
Cons ci ratio: 2.870972e-01	ci left: 1.567108e-02	ci right 2.101476e-02	k: 182	n:10000
KS ci ratio: 8.555495e-02	ci left: 1.660256e-01	ci right 1.809651e-01	k: 1734	n:10000
PYROXD1   10000 perm   2 sec   (5776 perm/sec)   p_kst 1.734000e-01   p_cons 1.820000e-02   p_joint 3.620000e-02

Joint ci ratio: 2.153268e-01	ci left: 1.454332e-02	ci right 1.809931e-02	k: 325	n:20000
Cons ci ratio: 2.047293e-01	ci left: 1.615527e-02	ci right 1.988674e-02	k: 359	n:20000
KS ci ratio: 5.959551e-02	ci left: 1.725232e-01	ci right 1.831706e-01	k: 3556	n:20000
PYROXD1   20000 perm   4 sec   (5372 perm/sec)   p_kst 1.778000e-01   p_cons 1.795000e-02   p_joint 1.625000e-02

Joint ci ratio: 1.788124e-01	ci left: 1.435554e-02	ci right 1.720602e-02	k: 472	n:30000
Cons ci ratio: 1.695765e-01	ci left: 1.601447e-02	ci right 1.901335e-02	k: 524	n:30000
KS ci ratio: 4.841985e-02	ci left: 1.749407e-01	ci right 1.836548e-01	k: 5378	n:30000
PYROXD1   30000 perm   6 sec   (5193 perm/sec)   p_kst 1.792667e-01   p_cons 1.746667e-02   p_joint 1.573333e-02

Joint ci ratio: 1.545664e-01	ci left: 1.460070e-02	ci right 1.707032e-02	k: 632	n:40000
Cons ci ratio: 1.452818e-01	ci left: 1.657503e-02	ci right 1.919562e-02	k: 714	n:40000
KS ci ratio: 4.222011e-02	ci left: 1.735435e-01	ci right 1.810534e-01	k: 7091	n:40000
PYROXD1   40000 perm   8 sec   (5053 perm/sec)   p_kst 1.772750e-01   p_cons 1.785000e-02   p_joint 1.580000e-02

Joint ci ratio: 2.044299e-01	ci left: 6.553571e-03	ci right 8.064478e-03	k: 364	n:50000
Cons ci ratio: 1.294109e-01	ci left: 1.685270e-02	ci right 1.920373e-02	k: 900	n:50000
KS ci ratio: 3.785633e-02	ci left: 1.732267e-01	ci right 1.799309e-01	k: 8828	n:50000
PYROXD1   50000 perm   10 sec   (4941 perm/sec)   p_kst 1.765600e-01   p_cons 1.800000e-02   p_joint 7.280000e-03

Joint ci ratio: 1.579060e-01	ci left: 9.363400e-03	ci right 1.098451e-02	k: 609	n:60000
Cons ci ratio: 1.188767e-01	ci left: 1.674087e-02	ci right 1.887281e-02	k: 1067	n:60000
KS ci ratio: 3.465893e-02	ci left: 1.726789e-01	ci right 1.787859e-01	k: 10543	n:60000
PYROXD1   60000 perm   12 sec   (4830 perm/sec)   p_kst 1.757167e-01   p_cons 1.778333e-02   p_joint 1.015000e-02

Joint ci ratio: 1.752095e-01	ci left: 6.477708e-03	ci right 7.735099e-03	k: 496	n:70000
Cons ci ratio: 1.113857e-01	ci left: 1.641647e-02	ci right 1.836668e-02	k: 1216	n:70000
KS ci ratio: 3.217260e-02	ci left: 1.721490e-01	ci right 1.777923e-01	k: 12247	n:70000
PYROXD1   70000 perm   15 sec   (4737 perm/sec)   p_kst 1.749571e-01   p_cons 1.737143e-02   p_joint 7.085714e-03

Joint ci ratio: 1.649202e-01	ci left: 6.433953e-03	ci right 7.602228e-03	k: 560	n:80000
Cons ci ratio: 1.039585e-01	ci left: 1.655392e-02	ci right 1.838131e-02	k: 1396	n:80000
KS ci ratio: 3.002678e-02	ci left: 1.729814e-01	ci right 1.782671e-01	k: 14049	n:80000
PYROXD1   80000 perm   17 sec   (4652 perm/sec)   p_kst 1.756125e-01   p_cons 1.745000e-02   p_joint 7.000000e-03

Joint ci ratio: 1.300110e-01	ci left: 9.349476e-03	ci right 1.066017e-02	k: 899	n:90000
Cons ci ratio: 9.822395e-02	ci left: 1.653408e-02	ci right 1.825278e-02	k: 1564	n:90000
KS ci ratio: 2.828918e-02	ci left: 1.733402e-01	ci right 1.783252e-01	k: 15824	n:90000
PYROXD1   90000 perm   20 sec   (4556 perm/sec)   p_kst 1.758222e-01   p_cons 1.737778e-02   p_joint 9.988889e-03

Joint ci ratio: 1.230909e-01	ci left: 9.421640e-03	ci right 1.066703e-02	k: 1003	n:100000
Cons ci ratio: 9.299016e-02	ci left: 1.664745e-02	ci right 1.828071e-02	k: 1745	n:100000
KS ci ratio: 2.682761e-02	ci left: 1.735745e-01	ci right 1.783043e-01	k: 17593	n:100000
PYROXD1   100000 perm   22 sec   (4445 perm/sec)   p_kst 1.759300e-01   p_cons 1.745000e-02   p_joint 1.003000e-02

Joint ci ratio: 1.173841e-01	ci left: 9.446891e-03	ci right 1.063370e-02	k: 1103	n:110000
Cons ci ratio: 8.846598e-02	ci left: 1.675999e-02	ci right 1.832014e-02	k: 1928	n:110000
KS ci ratio: 2.558988e-02	ci left: 1.735636e-01	ci right 1.780717e-01	k: 19339	n:110000
PYROXD1   110000 perm   25 sec   (4359 perm/sec)   p_kst 1.758091e-01   p_cons 1.752727e-02   p_joint 1.002727e-02

Joint ci ratio: 1.122627e-01	ci left: 9.493350e-03	ci right 1.063052e-02	k: 1206	n:120000
Cons ci ratio: 8.478928e-02	ci left: 1.675746e-02	ci right 1.824933e-02	k: 2099	n:120000
KS ci ratio: 2.447173e-02	ci left: 1.739983e-01	ci right 1.783174e-01	k: 21138	n:120000
PYROXD1   120000 perm   28 sec   (4268 perm/sec)   p_kst 1.761500e-01   p_cons 1.749167e-02   p_joint 1.005000e-02

Joint ci ratio: 8.675665e-02	ci left: 1.479030e-02	ci right 1.613913e-02	k: 2009	n:130000
Cons ci ratio: 8.115486e-02	ci left: 1.691476e-02	ci right 1.835303e-02	k: 2291	n:130000
KS ci ratio: 2.350457e-02	ci left: 1.741706e-01	ci right 1.783207e-01	k: 22911	n:130000
PYROXD1   130000 perm   31 sec   (4168 perm/sec)   p_kst 1.762385e-01   p_cons 1.762308e-02   p_joint 1.545385e-02

Outputting figure to mutsig2_images.part000000000141/PYROXD1.2_1551_130000_0.17624_0.017623_0.015454.png
                gene_name: PYROXD1
               theta_stop: 0.087 
                    nperm: 130000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 97 percent done.
PYROXD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.054278e-02	ci left: 3.659962e-01	ci right 3.850763e-01	k: 3755	n:10000
Cons ci ratio: 2.580770e-02	ci left: 6.884913e-01	ci right 7.065935e-01	k: 6976	n:10000
KS ci ratio: 1.330186e-01	ci left: 7.456177e-02	ci right 8.528446e-02	k: 798	n:10000
PYROXD2   10000 perm   2 sec   (6175 perm/sec)   p_kst 7.980000e-02   p_cons 6.976000e-01   p_joint 3.755000e-01

Joint ci ratio: 3.828181e-02	ci left: 3.373149e-01	ci right 3.505305e-01	k: 6878	n:20000
Cons ci ratio: 1.812830e-02	ci left: 6.939976e-01	ci right 7.067441e-01	k: 14008	n:20000
KS ci ratio: 9.336355e-02	ci left: 7.720594e-02	ci right 8.481639e-02	k: 1619	n:20000
PYROXD2   20000 perm   4 sec   (5400 perm/sec)   p_kst 8.095000e-02   p_cons 7.004000e-01   p_joint 3.439000e-01

Outputting figure to mutsig2_images.part000000000141/PYROXD2.2_1810_20000_0.08095_0.7004_0.3439.png
                gene_name: PYROXD2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 98 percent done.
QPCT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.008223e-02	ci left: 2.298781e-01	ci right 2.466746e-01	k: 2382	n:10000
Cons ci ratio: 1.436501e-01	ci left: 6.430174e-02	ci right 7.435091e-02	k: 692	n:10000
KS ci ratio: 4.447696e-02	ci left: 4.273475e-01	ci right 4.468891e-01	k: 4371	n:10000
QPCT   10000 perm   1 sec   (6739 perm/sec)   p_kst 4.371000e-01   p_cons 6.920000e-02   p_joint 2.382000e-01

Joint ci ratio: 2.850081e-02	ci left: 4.791006e-01	ci right 4.930034e-01	k: 9721	n:20000
Cons ci ratio: 1.022535e-01	ci left: 6.493948e-02	ci right 7.198661e-02	k: 1368	n:20000
KS ci ratio: 3.152632e-02	ci left: 4.290623e-01	ci right 4.428563e-01	k: 8719	n:20000
QPCT   20000 perm   3 sec   (5924 perm/sec)   p_kst 4.359500e-01   p_cons 6.840000e-02   p_joint 4.860500e-01

Joint ci ratio: 3.330246e-02	ci left: 3.106409e-01	ci right 3.211947e-01	k: 9477	n:30000
Cons ci ratio: 8.278910e-02	ci left: 6.664747e-02	ci right 7.243623e-02	k: 2085	n:30000
KS ci ratio: 2.555174e-02	ci left: 4.339729e-01	ci right 4.452388e-01	k: 13188	n:30000
QPCT   30000 perm   5 sec   (5456 perm/sec)   p_kst 4.396000e-01   p_cons 6.950000e-02   p_joint 3.159000e-01

Outputting figure to mutsig2_images.part000000000141/QPCT.2_1114_30000_0.4396_0.0695_0.3159.png
                gene_name: QPCT
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000141
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 141 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1643>
Subject: Job 9894100: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1643>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000142> was used as the working directory.
Started at Sat Oct  6 00:26:42 2012
Results reported at Sat Oct  6 00:34:49 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000142.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000142.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 142  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000142.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    477.25 sec.
    Max Memory :      3649 MB
    Max Swap   :      5997 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
142
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 142
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 142: processing genes 12712 - 12801
Calculating significance of each gene.
Using projection method.
12712	QRICH1	2.407433e-01
12713	QRICH2	9.968763e-01
12714	QRSL1	3.082371e-01
12715	QSER1	9.453971e-01
12716	QSOX1	6.609228e-01
12717	QSOX2	9.197342e-01
12718	QTRT1	6.393891e-01
12719	QTRTD1	7.715242e-01
12720	R3HDM1	9.053941e-01
12721	R3HDM2	4.934010e-01
12722	R3HDML	4.250095e-01
12723	RAB10	1
12724	RAB11A	7.017327e-01
12725	RAB11B	2.393063e-01
12726	RAB11FIP1	9.987692e-01
12727	RAB11FIP2	1.380591e-01
12728	RAB11FIP3	1
12729	RAB11FIP4	5.038646e-01
12730	RAB11FIP5	9.176731e-01
12731	RAB12	1
12732	RAB13	1
12733	RAB14	3.645912e-01
12734	RAB15	2.431723e-01
12735	RAB17	5.678343e-01
12736	RAB18	4.392406e-01
12737	RAB19	1.980384e-01
12738	RAB1A	1
12739	RAB1B	6.510430e-01
12740	RAB20	6.208414e-01
12741	RAB21	4.075571e-01
12742	RAB22A	5.562148e-01
12743	RAB23	3.396670e-01
12744	RAB24	2.083566e-01
12745	RAB25	1.445872e-01
12746	RAB26	5.380766e-01
12747	RAB27A	2.998500e-01
12748	RAB27B	3.810438e-01
12749	RAB28	7.478755e-01
12750	RAB2A	1
12751	RAB2B	1
12752	RAB30	3.659243e-01
12753	RAB31	1.423691e-01
12754	RAB32	4.009876e-01
12755	RAB33A	3.337288e-01
12756	RAB33B	7.881136e-01
12757	RAB34	8.349490e-01
12758	RAB35	1
12759	RAB36	6.370303e-01
12760	RAB37	3.866442e-01
12761	RAB38	4.999640e-01
12762	RAB39	4.239284e-02
12763	RAB39B	2.724011e-01
12764	RAB3A	4.767734e-01
12765	RAB3B	6.341130e-01
12766	RAB3C	2.214431e-02
12767	RAB3D	1.078428e-01
12768	RAB3GAP1	7.617177e-01
12769	RAB3GAP2	4.801067e-01
In gene RAB3IL1 the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 901     n = 1	mu =   2.96e-07
12770	RAB3IL1	5.599342e-01
12771	RAB3IP	9.102474e-01
12772	RAB40A	1
12773	RAB40AL	6.140597e-01
12774	RAB40B	2.685735e-01
12775	RAB40C	6.919957e-01
12776	RAB41	3.042230e-01
12777	RAB42	2.698147e-01
12778	RAB43	7.655275e-01
12779	RAB4A	4.688961e-01
12780	RAB4B	4.058616e-01
12781	RAB5A	1
12782	RAB5B	3.794619e-01
12783	RAB5C	1
12784	RAB6A	2.604244e-01
12785	RAB6B	1
12786	RAB6C	1
12787	RAB7A	3.467515e-01
12788	RAB7L1	3.101690e-01
12789	RAB8A	6.294403e-01
12790	RAB8B	3.285812e-01
12791	RAB9A	5.902950e-01
12792	RAB9B	3.962050e-01
12793	RABAC1	1
12794	RABEP1	9.071158e-01
12795	RABEP2	9.017949e-01
12796	RABEPK	1
12797	RABGAP1	3.652611e-01
12798	RABGAP1L	6.778329e-02
12799	RABGEF1	5.387738e-01
12800	RABGGTA	7.509929e-01
12801	RABGGTB	1.187172e-01
Done

Running MutSig 2:
Scatter job 142: processing genes 12712 - 12801
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
QRICH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.687980e-02	ci left: 5.205606e-01	ci right 5.402216e-01	k: 5304	n:10000
Cons ci ratio: 8.472899e-02	ci left: 1.687778e-01	ci right 1.838112e-01	k: 1762	n:10000
KS ci ratio: 9.372405e-03	ci left: 9.413886e-01	ci right 9.503494e-01	k: 9460	n:10000
QRICH1   10000 perm   2 sec   (5153 perm/sec)   p_kst 9.460000e-01   p_cons 1.762000e-01   p_joint 5.304000e-01

Outputting figure to mutsig2_images.part000000000142/QRICH1.7_2367_10000_0.946_0.1762_0.5304.png
                gene_name: QRICH1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 2 percent done.
RAB3GAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.709095e-02	ci left: 8.329712e-01	ci right 8.474300e-01	k: 8403	n:10000
Cons ci ratio: 6.485020e-02	ci left: 2.588428e-01	ci right 2.762928e-01	k: 2675	n:10000
KS ci ratio: 1.769821e-02	ci left: 8.232038e-01	ci right 8.380031e-01	k: 8307	n:10000
RAB3GAP2   10000 perm   2 sec   (4053 perm/sec)   p_kst 8.307000e-01   p_cons 2.675000e-01   p_joint 8.403000e-01

Outputting figure to mutsig2_images.part000000000142/RAB3GAP2.7_4322_10000_0.8307_0.2675_0.8403.png
                gene_name: RAB3GAP2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 4 percent done.
RABGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.906652e-02	ci left: 6.357313e-01	ci right 6.545841e-01	k: 6452	n:10000
KS ci ratio: 2.409930e-02	ci left: 7.168405e-01	ci right 7.344279e-01	k: 7257	n:10000
RABGAP1   10000 perm   2 sec   (4735 perm/sec)   p_kst 7.257000e-01   p_cons 6.452000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RABGAP1.7_3310_10000_0.7257_0.6452_1.png
                gene_name: RABGAP1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
RABGAP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.465098e-01	ci left: 6.188659e-02	ci right 7.176758e-02	k: 667	n:10000
Cons ci ratio: 4.972318e-02	ci left: 3.736565e-01	ci right 3.928116e-01	k: 3832	n:10000
KS ci ratio: 1.838079e-01	ci left: 3.948997e-02	ci right 4.757866e-02	k: 434	n:10000
RABGAP1L   10000 perm   2 sec   (5200 perm/sec)   p_kst 4.340000e-02   p_cons 3.832000e-01   p_joint 6.670000e-02

Joint ci ratio: 1.055174e-01	ci left: 6.113414e-02	ci right 6.799312e-02	k: 1290	n:20000
Cons ci ratio: 3.476845e-02	ci left: 3.817864e-01	ci right 3.953460e-01	k: 7771	n:20000
KS ci ratio: 1.296634e-01	ci left: 4.085991e-02	ci right 4.657370e-02	k: 873	n:20000
RABGAP1L   20000 perm   4 sec   (4661 perm/sec)   p_kst 4.365000e-02   p_cons 3.885500e-01   p_joint 6.450000e-02

Joint ci ratio: 7.279728e-02	ci left: 8.491596e-02	ci right 9.136406e-02	k: 2643	n:30000
Cons ci ratio: 2.835046e-02	ci left: 3.836770e-01	ci right 3.947444e-01	k: 11676	n:30000
KS ci ratio: 1.044213e-01	ci left: 4.251916e-02	ci right 4.723615e-02	k: 1345	n:30000
RABGAP1L   30000 perm   7 sec   (4488 perm/sec)   p_kst 4.483333e-02   p_cons 3.892000e-01   p_joint 8.810000e-02

Joint ci ratio: 6.589704e-02	ci left: 7.859047e-02	ci right 8.397050e-02	k: 3250	n:40000
Cons ci ratio: 2.453584e-02	ci left: 3.847419e-01	ci right 3.943242e-01	k: 15581	n:40000
KS ci ratio: 9.034401e-02	ci left: 4.291567e-02	ci right 4.700072e-02	k: 1797	n:40000
RABGAP1L   40000 perm   9 sec   (4286 perm/sec)   p_kst 4.492500e-02   p_cons 3.895250e-01   p_joint 8.125000e-02

Outputting figure to mutsig2_images.part000000000142/RABGAP1L.7_2643_40000_0.044925_0.38953_0.08125.png
                gene_name: RABGAP1L
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.084 

Current progress: 9 percent done.
QSER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.080975e-02	ci left: 6.084942e-01	ci right 6.276370e-01	k: 6181	n:10000
Cons ci ratio: 1.593649e-02	ci left: 8.512085e-01	ci right 8.649822e-01	k: 8582	n:10000
KS ci ratio: 5.936928e-02	ci left: 2.944970e-01	ci right 3.126176e-01	k: 3035	n:10000
QSER1   10000 perm   2 sec   (4028 perm/sec)   p_kst 3.035000e-01   p_cons 8.582000e-01   p_joint 6.181000e-01

Outputting figure to mutsig2_images.part000000000142/QSER1.5_5252_10000_0.3035_0.8582_0.6181.png
                gene_name: QSER1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 11 percent done.
RAB3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.302053e-01	ci left: 7.766482e-02	ci right 8.857947e-02	k: 830	n:10000
Cons ci ratio: 2.526781e-01	ci left: 2.052656e-02	ci right 2.655540e-02	k: 234	n:10000
KS ci ratio: 5.219901e-02	ci left: 3.510811e-01	ci right 3.700002e-01	k: 3605	n:10000
RAB3C   10000 perm   2 sec   (5651 perm/sec)   p_kst 3.605000e-01   p_cons 2.340000e-02   p_joint 8.300000e-02

Joint ci ratio: 7.633143e-02	ci left: 1.120355e-01	ci right 1.209763e-01	k: 2329	n:20000
Cons ci ratio: 1.771369e-01	ci left: 2.177980e-02	ci right 2.606015e-02	k: 477	n:20000
KS ci ratio: 3.729749e-02	ci left: 3.491115e-01	ci right 3.624305e-01	k: 7115	n:20000
RAB3C   20000 perm   4 sec   (4551 perm/sec)   p_kst 3.557500e-01   p_cons 2.385000e-02   p_joint 1.164500e-01

Joint ci ratio: 5.074660e-02	ci left: 1.616734e-01	ci right 1.701247e-01	k: 4976	n:30000
Cons ci ratio: 1.433074e-01	ci left: 2.258711e-02	ci right 2.610583e-02	k: 729	n:30000
KS ci ratio: 3.046875e-02	ci left: 3.501143e-01	ci right 3.609804e-01	k: 10666	n:30000
RAB3C   30000 perm   7 sec   (4459 perm/sec)   p_kst 3.555333e-01   p_cons 2.430000e-02   p_joint 1.658667e-01

Joint ci ratio: 4.511044e-02	ci left: 1.552059e-01	ci right 1.623937e-01	k: 6351	n:40000
Cons ci ratio: 1.253906e-01	ci left: 2.235264e-02	ci right 2.536703e-02	k: 953	n:40000
KS ci ratio: 2.634740e-02	ci left: 3.515301e-01	ci right 3.609408e-01	k: 14249	n:40000
RAB3C   40000 perm   9 sec   (4432 perm/sec)   p_kst 3.562250e-01   p_cons 2.382500e-02   p_joint 1.587750e-01

Joint ci ratio: 4.035411e-02	ci left: 1.555468e-01	ci right 1.619729e-01	k: 7937	n:50000
Cons ci ratio: 1.134013e-01	ci left: 2.201490e-02	ci right 2.468084e-02	k: 1166	n:50000
KS ci ratio: 2.361472e-02	ci left: 3.510835e-01	ci right 3.594933e-01	k: 17764	n:50000
RAB3C   50000 perm   11 sec   (4380 perm/sec)   p_kst 3.552800e-01   p_cons 2.332000e-02   p_joint 1.587400e-01

Joint ci ratio: 4.532775e-02	ci left: 1.083155e-01	ci right 1.133556e-01	k: 6649	n:60000
Cons ci ratio: 1.037259e-01	ci left: 2.204272e-02	ci right 2.447036e-02	k: 1394	n:60000
KS ci ratio: 2.183127e-02	ci left: 3.457004e-01	ci right 3.533475e-01	k: 20971	n:60000
RAB3C   60000 perm   14 sec   (4287 perm/sec)   p_kst 3.495167e-01   p_cons 2.323333e-02   p_joint 1.108167e-01

Joint ci ratio: 4.234174e-02	ci left: 1.067712e-01	ci right 1.114041e-01	k: 7635	n:70000
Cons ci ratio: 9.550724e-02	ci left: 2.237649e-02	ci right 2.463467e-02	k: 1644	n:70000
KS ci ratio: 2.032621e-02	ci left: 3.434302e-01	ci right 3.504968e-01	k: 24287	n:70000
RAB3C   70000 perm   16 sec   (4259 perm/sec)   p_kst 3.469571e-01   p_cons 2.348571e-02   p_joint 1.090714e-01

Outputting figure to mutsig2_images.part000000000142/RAB3C.5_704_70000_0.34696_0.023486_0.10907.png
                gene_name: RAB3C
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 13 percent done.
RAB3GAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.993693e-02	ci left: 7.864452e-01	ci right 8.023829e-01	k: 7945	n:10000
KS ci ratio: 1.445804e-02	ci left: 8.737768e-01	ci right 8.866008e-01	k: 8803	n:10000
RAB3GAP1   10000 perm   2 sec   (5468 perm/sec)   p_kst 8.803000e-01   p_cons 7.945000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB3GAP1.5_3067_10000_0.8803_0.7945_1.png
                gene_name: RAB3GAP1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
QRSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.987856e-02	ci left: 2.909285e-01	ci right 3.089882e-01	k: 2999	n:10000
Cons ci ratio: 1.211965e-01	ci left: 8.893260e-02	ci right 1.005047e-01	k: 946	n:10000
KS ci ratio: 4.090057e-02	ci left: 4.688665e-01	ci right 4.885459e-01	k: 4787	n:10000
QRSL1   10000 perm   2 sec   (5957 perm/sec)   p_kst 4.787000e-01   p_cons 9.460000e-02   p_joint 2.999000e-01

Joint ci ratio: 5.885224e-02	ci left: 1.761799e-01	ci right 1.869129e-01	k: 3630	n:20000
Cons ci ratio: 9.268048e-02	ci left: 7.828247e-02	ci right 8.593954e-02	k: 1641	n:20000
KS ci ratio: 2.893496e-02	ci left: 4.715554e-01	ci right 4.854508e-01	k: 9570	n:20000
QRSL1   20000 perm   4 sec   (5312 perm/sec)   p_kst 4.785000e-01   p_cons 8.205000e-02   p_joint 1.815000e-01

Outputting figure to mutsig2_images.part000000000142/QRSL1.4_1631_20000_0.4785_0.08205_0.1815.png
                gene_name: QRSL1
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 17 percent done.
QSOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.299014e-02	ci left: 4.441065e-01	ci right 4.637203e-01	k: 4539	n:10000
Cons ci ratio: 1.408530e-02	ci left: 8.793013e-01	ci right 8.918731e-01	k: 8857	n:10000
KS ci ratio: 7.144074e-02	ci left: 2.230647e-01	ci right 2.396920e-01	k: 2313	n:10000
QSOX1   10000 perm   2 sec   (5676 perm/sec)   p_kst 2.313000e-01   p_cons 8.857000e-01   p_joint 4.539000e-01

Outputting figure to mutsig2_images.part000000000142/QSOX1.4_2305_10000_0.2313_0.8857_0.4539.png
                gene_name: QSOX1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 20 percent done.
RAB11FIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.244499e-02	ci left: 5.836966e-01	ci right 6.030490e-01	k: 5934	n:10000
KS ci ratio: 2.681507e-02	ci left: 6.719646e-01	ci right 6.903298e-01	k: 6812	n:10000
RAB11FIP1   10000 perm   2 sec   (5095 perm/sec)   p_kst 6.812000e-01   p_cons 5.934000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB11FIP1.4_3876_10000_0.6812_0.5934_1.png
                gene_name: RAB11FIP1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
RAB11FIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.405707e-02	ci left: 5.600270e-01	ci right 5.795323e-01	k: 5698	n:10000
Cons ci ratio: 2.202833e-02	ci left: 7.515043e-01	ci right 7.683440e-01	k: 7600	n:10000
KS ci ratio: 7.944208e-02	ci left: 1.879635e-01	ci right 2.036141e-01	k: 1957	n:10000
RAB11FIP2   10000 perm   2 sec   (5603 perm/sec)   p_kst 1.957000e-01   p_cons 7.600000e-01   p_joint 5.698000e-01

Outputting figure to mutsig2_images.part000000000142/RAB11FIP2.4_1559_10000_0.1957_0.76_0.5698.png
                gene_name: RAB11FIP2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 24 percent done.
RABGGTB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.518897e-02	ci left: 5.438924e-01	ci right 5.634763e-01	k: 5537	n:10000
KS ci ratio: 1.646289e-02	ci left: 8.429516e-01	ci right 8.570439e-01	k: 8501	n:10000
RABGGTB   10000 perm   2 sec   (6370 perm/sec)   p_kst 8.501000e-01   p_cons 5.537000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RABGGTB.4_1032_10000_0.8501_0.5537_1.png
                gene_name: RABGGTB
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
R3HDM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.458556e-02	ci left: 4.261509e-01	ci right 4.456865e-01	k: 4359	n:10000
Cons ci ratio: 1.021741e-01	ci left: 1.217066e-01	ci right 1.349108e-01	k: 1282	n:10000
KS ci ratio: 1.715456e-02	ci left: 8.319533e-01	ci right 8.464485e-01	k: 8393	n:10000
R3HDM1   10000 perm   2 sec   (5332 perm/sec)   p_kst 8.393000e-01   p_cons 1.282000e-01   p_joint 4.359000e-01

Joint ci ratio: 2.804829e-02	ci left: 4.870973e-01	ci right 5.010045e-01	k: 9881	n:20000
Cons ci ratio: 7.175291e-02	ci left: 1.251713e-01	ci right 1.345366e-01	k: 2596	n:20000
KS ci ratio: 1.193562e-02	ci left: 8.384910e-01	ci right 8.486089e-01	k: 16872	n:20000
R3HDM1   20000 perm   4 sec   (4712 perm/sec)   p_kst 8.436000e-01   p_cons 1.298000e-01   p_joint 4.940500e-01

Outputting figure to mutsig2_images.part000000000142/R3HDM1.3_3396_20000_0.8436_0.1298_0.49405.png
                gene_name: R3HDM1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 28 percent done.
R3HDM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.020829e-01	ci left: 1.219021e-01	ci right 1.351151e-01	k: 1284	n:10000
Cons ci ratio: 2.110358e-02	ci left: 7.669899e-01	ci right 7.834495e-01	k: 7753	n:10000
KS ci ratio: 1.648733e-01	ci left: 4.907401e-02	ci right 5.798834e-02	k: 534	n:10000
R3HDM2   10000 perm   2 sec   (4795 perm/sec)   p_kst 5.340000e-02   p_cons 7.753000e-01   p_joint 1.284000e-01

Joint ci ratio: 6.717203e-02	ci left: 1.405907e-01	ci right 1.504126e-01	k: 2909	n:20000
Cons ci ratio: 1.531806e-02	ci left: 7.601195e-01	ci right 7.719031e-01	k: 15321	n:20000
KS ci ratio: 1.149490e-01	ci left: 5.178301e-02	ci right 5.814716e-02	k: 1098	n:20000
R3HDM2   20000 perm   5 sec   (4068 perm/sec)   p_kst 5.490000e-02   p_cons 7.660500e-01   p_joint 1.454500e-01

Joint ci ratio: 5.337327e-02	ci left: 1.483172e-01	ci right 1.564836e-01	k: 4571	n:30000
Cons ci ratio: 1.244957e-02	ci left: 7.628789e-01	ci right 7.724692e-01	k: 23031	n:30000
KS ci ratio: 9.544401e-02	ci left: 5.068706e-02	ci right 5.579990e-02	k: 1596	n:30000
R3HDM2   30000 perm   7 sec   (4040 perm/sec)   p_kst 5.320000e-02   p_cons 7.677000e-01   p_joint 1.523667e-01

Outputting figure to mutsig2_images.part000000000142/R3HDM2.3_3019_30000_0.0532_0.7677_0.15237.png
                gene_name: R3HDM2
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 30 percent done.
RAB27B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.671176e-02	ci left: 1.342342e-01	ci right 1.479756e-01	k: 1410	n:10000
KS ci ratio: 2.556943e-02	ci left: 6.924235e-01	ci right 7.104591e-01	k: 7015	n:10000
RAB27B   10000 perm   2 sec   (6598 perm/sec)   p_kst 7.015000e-01   p_cons 1.410000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB27B.3_677_10000_0.7015_0.141_1.png
                gene_name: RAB27B
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
RAB39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.405012e-02	ci left: 5.601272e-01	ci right 5.796320e-01	k: 5699	n:10000
Cons ci ratio: 2.862361e-02	ci left: 6.427720e-01	ci right 6.615393e-01	k: 6522	n:10000
KS ci ratio: 5.302402e-02	ci left: 3.439253e-01	ci right 3.627602e-01	k: 3533	n:10000
RAB39   10000 perm   2 sec   (6040 perm/sec)   p_kst 3.533000e-01   p_cons 6.522000e-01   p_joint 5.699000e-01

Outputting figure to mutsig2_images.part000000000142/RAB39.3_662_10000_0.3533_0.6522_0.5699.png
                gene_name: RAB39
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 35 percent done.
RAB3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.211988e-02	ci left: 3.517769e-01	ci right 3.707040e-01	k: 3612	n:10000
Cons ci ratio: 1.619083e-02	ci left: 8.472320e-01	ci right 8.611609e-01	k: 8543	n:10000
KS ci ratio: 6.345683e-02	ci left: 2.673539e-01	ci right 2.849767e-01	k: 2761	n:10000
RAB3D   10000 perm   2 sec   (6485 perm/sec)   p_kst 2.761000e-01   p_cons 8.543000e-01   p_joint 3.612000e-01

Outputting figure to mutsig2_images.part000000000142/RAB3D.3_676_10000_0.2761_0.8543_0.3612.png
                gene_name: RAB3D
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 37 percent done.
RABGEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.838079e-01	ci left: 3.948997e-02	ci right 4.757866e-02	k: 434	n:10000
Cons ci ratio: 1.644352e-02	ci left: 8.432573e-01	ci right 8.573380e-01	k: 8504	n:10000
KS ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
RABGEF1   10000 perm   2 sec   (5819 perm/sec)   p_kst 1.340000e-02   p_cons 8.504000e-01   p_joint 4.340000e-02

Joint ci ratio: 1.101019e-01	ci left: 5.630945e-02	ci right 6.291930e-02	k: 1191	n:20000
Cons ci ratio: 1.213623e-02	ci left: 8.339841e-01	ci right 8.442171e-01	k: 16783	n:20000
KS ci ratio: 2.364985e-01	ci left: 1.194666e-02	ci right 1.519704e-02	k: 270	n:20000
RABGEF1   20000 perm   4 sec   (4904 perm/sec)   p_kst 1.350000e-02   p_cons 8.391500e-01   p_joint 5.955000e-02

Joint ci ratio: 1.273109e-01	ci left: 2.867995e-02	ci right 3.261164e-02	k: 918	n:30000
Cons ci ratio: 9.837365e-03	ci left: 8.369135e-01	ci right 8.452204e-01	k: 25233	n:30000
KS ci ratio: 2.003455e-01	ci left: 1.133685e-02	ci right 1.389217e-02	k: 377	n:30000
RABGEF1   30000 perm   6 sec   (4766 perm/sec)   p_kst 1.256667e-02   p_cons 8.411000e-01   p_joint 3.060000e-02

Joint ci ratio: 1.209810e-01	ci left: 2.402572e-02	ci right 2.714367e-02	k: 1022	n:40000
Cons ci ratio: 8.503395e-03	ci left: 8.379847e-01	ci right 8.451657e-01	k: 33664	n:40000
KS ci ratio: 1.733310e-01	ci left: 1.152992e-02	ci right 1.374168e-02	k: 504	n:40000
RABGEF1   40000 perm   9 sec   (4694 perm/sec)   p_kst 1.260000e-02   p_cons 8.416000e-01   p_joint 2.555000e-02

Joint ci ratio: 1.342733e-01	ci left: 1.563358e-02	ci right 1.790302e-02	k: 837	n:50000
Cons ci ratio: 7.646090e-03	ci left: 8.369383e-01	ci right 8.433821e-01	k: 42009	n:50000
KS ci ratio: 1.564503e-01	ci left: 1.142918e-02	ci right 1.338804e-02	k: 619	n:50000
RABGEF1   50000 perm   11 sec   (4623 perm/sec)   p_kst 1.238000e-02   p_cons 8.401800e-01   p_joint 1.674000e-02

Joint ci ratio: 1.204950e-01	ci left: 1.628794e-02	ci right 1.839245e-02	k: 1039	n:60000
Cons ci ratio: 6.959848e-03	ci left: 8.379989e-01	ci right 8.438681e-01	k: 50457	n:60000
KS ci ratio: 1.415720e-01	ci left: 1.172281e-02	ci right 1.352479e-02	k: 756	n:60000
RABGEF1   60000 perm   13 sec   (4551 perm/sec)   p_kst 1.260000e-02   p_cons 8.409500e-01   p_joint 1.731667e-02

Joint ci ratio: 1.118543e-01	ci left: 1.627754e-02	ci right 1.821992e-02	k: 1206	n:70000
Cons ci ratio: 6.427545e-03	ci left: 8.388883e-01	ci right 8.443119e-01	k: 58913	n:70000
KS ci ratio: 1.316123e-01	ci left: 1.169007e-02	ci right 1.335071e-02	k: 875	n:70000
RABGEF1   70000 perm   16 sec   (4426 perm/sec)   p_kst 1.250000e-02   p_cons 8.416143e-01   p_joint 1.722857e-02

Joint ci ratio: 1.198877e-01	ci left: 1.239631e-02	ci right 1.398928e-02	k: 1054	n:80000
Cons ci ratio: 5.998346e-03	ci left: 8.396929e-01	ci right 8.447572e-01	k: 67379	n:80000
KS ci ratio: 1.250323e-01	ci left: 1.137809e-02	ci right 1.290760e-02	k: 970	n:80000
RABGEF1   80000 perm   19 sec   (4290 perm/sec)   p_kst 1.212500e-02   p_cons 8.422375e-01   p_joint 1.317500e-02

Joint ci ratio: 1.051365e-01	ci left: 1.441077e-02	ci right 1.602069e-02	k: 1368	n:90000
Cons ci ratio: 5.655375e-03	ci left: 8.398353e-01	ci right 8.446093e-01	k: 75801	n:90000
KS ci ratio: 1.179021e-01	ci left: 1.141748e-02	ci right 1.285866e-02	k: 1091	n:90000
RABGEF1   90000 perm   21 sec   (4211 perm/sec)   p_kst 1.212222e-02   p_cons 8.422333e-01   p_joint 1.520000e-02

Joint ci ratio: 1.057279e-01	ci left: 1.284257e-02	ci right 1.428585e-02	k: 1355	n:100000
Cons ci ratio: 5.365221e-03	ci left: 8.399558e-01	ci right 8.444844e-01	k: 84223	n:100000
KS ci ratio: 1.117276e-01	ci left: 1.148016e-02	ci right 1.284835e-02	k: 1215	n:100000
RABGEF1   100000 perm   24 sec   (4129 perm/sec)   p_kst 1.215000e-02   p_cons 8.422300e-01   p_joint 1.355000e-02

Joint ci ratio: 1.013810e-01	ci left: 1.272883e-02	ci right 1.409700e-02	k: 1474	n:110000
Cons ci ratio: 5.114185e-03	ci left: 8.401327e-01	ci right 8.444493e-01	k: 92653	n:110000
KS ci ratio: 1.068358e-01	ci left: 1.144454e-02	ci right 1.274501e-02	k: 1329	n:110000
RABGEF1   110000 perm   27 sec   (4055 perm/sec)   p_kst 1.208182e-02   p_cons 8.423000e-01   p_joint 1.340000e-02

Joint ci ratio: 1.018236e-01	ci left: 1.157840e-02	ci right 1.282867e-02	k: 1463	n:120000
Cons ci ratio: 4.744112e-03	ci left: 8.484866e-01	ci right 8.525298e-01	k: 102062	n:120000
KS ci ratio: 1.029689e-01	ci left: 1.131849e-02	ci right 1.255527e-02	k: 1431	n:120000
RABGEF1   120000 perm   30 sec   (4004 perm/sec)   p_kst 1.192500e-02   p_cons 8.505167e-01   p_joint 1.219167e-02

Joint ci ratio: 9.337063e-02	ci left: 1.275194e-02	ci right 1.400837e-02	k: 1738	n:130000
Cons ci ratio: 4.554843e-03	ci left: 8.487433e-01	ci right 8.526256e-01	k: 110590	n:130000
KS ci ratio: 9.910187e-02	ci left: 1.130260e-02	ci right 1.248855e-02	k: 1545	n:130000
RABGEF1   130000 perm   33 sec   (3951 perm/sec)   p_kst 1.188462e-02   p_cons 8.506923e-01   p_joint 1.336923e-02

Outputting figure to mutsig2_images.part000000000142/RABGEF1.3_1508_130000_0.011885_0.85069_0.013369.png
                gene_name: RABGEF1
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 39 percent done.
QRICH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.431475e-02	ci left: 5.563181e-01	ci right 5.758434e-01	k: 5661	n:10000
Cons ci ratio: 2.101880e-02	ci left: 7.684076e-01	ci right 7.848309e-01	k: 7767	n:10000
KS ci ratio: 7.206900e-02	ci left: 2.200047e-01	ci right 2.365539e-01	k: 2282	n:10000
QRICH2   10000 perm   2 sec   (4960 perm/sec)   p_kst 2.282000e-01   p_cons 7.767000e-01   p_joint 5.661000e-01

Outputting figure to mutsig2_images.part000000000142/QRICH2.2_5068_10000_0.2282_0.7767_0.5661.png
                gene_name: QRICH2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 41 percent done.
QTRT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.109475e-02	ci left: 9.205911e-01	ci right 9.309592e-01	k: 9259	n:10000
Cons ci ratio: 4.112244e-02	ci left: 4.661697e-01	ci right 4.858443e-01	k: 4760	n:10000
KS ci ratio: 2.257745e-02	ci left: 7.423010e-01	ci right 7.593527e-01	k: 7509	n:10000
QTRT1   10000 perm   2 sec   (6203 perm/sec)   p_kst 7.509000e-01   p_cons 4.760000e-01   p_joint 9.259000e-01

Outputting figure to mutsig2_images.part000000000142/QTRT1.2_1252_10000_0.7509_0.476_0.9259.png
                gene_name: QTRT1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 43 percent done.
RAB11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.398467e-02	ci left: 2.640875e-01	ci right 2.816450e-01	k: 2728	n:10000
KS ci ratio: 3.735622e-02	ci left: 5.141557e-01	ci right 5.338303e-01	k: 5240	n:10000
RAB11B   10000 perm   2 sec   (6171 perm/sec)   p_kst 5.240000e-01   p_cons 2.728000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB11B.2_677_10000_0.524_0.2728_1.png
                gene_name: RAB11B
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
RAB11FIP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.184452e-02	ci left: 9.108030e-01	ci right 9.217531e-01	k: 9164	n:10000
Cons ci ratio: 4.404582e-02	ci left: 4.321347e-01	ci right 4.516992e-01	k: 4419	n:10000
KS ci ratio: 2.075816e-02	ci left: 7.727630e-01	ci right 7.890731e-01	k: 7810	n:10000
RAB11FIP4   10000 perm   2 sec   (5600 perm/sec)   p_kst 7.810000e-01   p_cons 4.419000e-01   p_joint 9.164000e-01

Outputting figure to mutsig2_images.part000000000142/RAB11FIP4.2_1974_10000_0.781_0.4419_0.9164.png
                gene_name: RAB11FIP4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 48 percent done.
RAB15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.323517e-02	ci left: 7.312838e-01	ci right 7.485762e-01	k: 7400	n:10000
KS ci ratio: 4.104012e-02	ci left: 4.671685e-01	ci right 4.868449e-01	k: 4770	n:10000
RAB15   10000 perm   1 sec   (6809 perm/sec)   p_kst 4.770000e-01   p_cons 7.400000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB15.2_655_10000_0.477_0.74_1.png
                gene_name: RAB15
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
RAB19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.382733e-02	ci left: 1.415836e-01	ci right 1.556218e-01	k: 1485	n:10000
KS ci ratio: 5.041374e-02	ci left: 3.671899e-01	ci right 3.862820e-01	k: 3767	n:10000
RAB19   10000 perm   2 sec   (6007 perm/sec)   p_kst 3.767000e-01   p_cons 1.485000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB19.2_666_10000_0.3767_0.1485_1.png
                gene_name: RAB19
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
RAB23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.240337e-02	ci left: 3.492919e-01	ci right 3.681904e-01	k: 3587	n:10000
Cons ci ratio: 1.018556e-01	ci left: 1.223911e-01	ci right 1.356258e-01	k: 1289	n:10000
KS ci ratio: 1.033792e-01	ci left: 1.191644e-01	ci right 1.322545e-01	k: 1256	n:10000
RAB23   10000 perm   2 sec   (5980 perm/sec)   p_kst 1.256000e-01   p_cons 1.289000e-01   p_joint 3.587000e-01

Joint ci ratio: 4.077599e-02	ci left: 3.095589e-01	ci right 3.224946e-01	k: 6320	n:20000
Cons ci ratio: 7.212038e-02	ci left: 1.240390e-01	ci right 1.333692e-01	k: 2573	n:20000
KS ci ratio: 7.244374e-02	ci left: 1.230546e-01	ci right 1.323539e-01	k: 2553	n:20000
RAB23   20000 perm   4 sec   (5398 perm/sec)   p_kst 1.276500e-01   p_cons 1.286500e-01   p_joint 3.160000e-01

Outputting figure to mutsig2_images.part000000000142/RAB23.2_738_20000_0.12765_0.12865_0.316.png
                gene_name: RAB23
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 54 percent done.
RAB24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.021046e-02	ci left: 4.773583e-01	ci right 4.970491e-01	k: 4872	n:10000
Cons ci ratio: 1.496089e-02	ci left: 8.662129e-01	ci right 8.793691e-01	k: 8729	n:10000
KS ci ratio: 9.499402e-02	ci left: 1.385451e-01	ci right 1.524621e-01	k: 1454	n:10000
RAB24   10000 perm   2 sec   (6353 perm/sec)   p_kst 1.454000e-01   p_cons 8.729000e-01   p_joint 4.872000e-01

Outputting figure to mutsig2_images.part000000000142/RAB24.2_644_10000_0.1454_0.8729_0.4872.png
                gene_name: RAB24
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 57 percent done.
RAB25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.314008e-03	ci left: 9.911641e-01	ci right 9.945392e-01	k: 9930	n:10000
Cons ci ratio: 1.265846e-01	ci left: 8.193541e-02	ci right 9.310624e-02	k: 874	n:10000
KS ci ratio: 7.539331e-02	ci left: 2.047140e-01	ci right 2.208536e-01	k: 2127	n:10000
RAB25   10000 perm   1 sec   (7028 perm/sec)   p_kst 2.127000e-01   p_cons 8.740000e-02   p_joint 9.930000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.827251e-02	ci left: 8.577461e-02	ci right 9.374513e-02	k: 1794	n:20000
KS ci ratio: 5.368851e-02	ci left: 2.047686e-01	ci right 2.161157e-01	k: 4208	n:20000
RAB25   20000 perm   3 sec   (6156 perm/sec)   p_kst 2.104000e-01   p_cons 8.970000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB25.2_662_20000_0.2104_0.0897_1.png
                gene_name: RAB25
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
RAB27A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.889743e-02	ci left: 4.939506e-01	ci right 5.136472e-01	k: 5038	n:10000
KS ci ratio: 2.228785e-02	ci left: 7.471549e-01	ci right 7.640960e-01	k: 7557	n:10000
RAB27A   10000 perm   1 sec   (6727 perm/sec)   p_kst 7.557000e-01   p_cons 5.038000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB27A.2_686_10000_0.7557_0.5038_1.png
                gene_name: RAB27A
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
RAB30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.229981e-01	ci left: 8.650182e-02	ci right 9.793702e-02	k: 921	n:10000
Cons ci ratio: 4.408155e-02	ci left: 4.317357e-01	ci right 4.512984e-01	k: 4415	n:10000
KS ci ratio: 2.589536e-01	ci left: 1.949575e-02	ci right 2.538701e-02	k: 223	n:10000
RAB30   10000 perm   1 sec   (7058 perm/sec)   p_kst 2.230000e-02   p_cons 4.415000e-01   p_joint 9.210000e-02

Joint ci ratio: 8.876230e-02	ci left: 8.489271e-02	ci right 9.282730e-02	k: 1776	n:20000
Cons ci ratio: 3.160336e-02	ci left: 4.278646e-01	ci right 4.416543e-01	k: 8695	n:20000
KS ci ratio: 1.881123e-01	ci left: 1.924843e-02	ci right 2.329242e-02	k: 424	n:20000
RAB30   20000 perm   3 sec   (6207 perm/sec)   p_kst 2.120000e-02   p_cons 4.347500e-01   p_joint 8.880000e-02

Joint ci ratio: 7.245223e-02	ci left: 8.566998e-02	ci right 9.214322e-02	k: 2666	n:30000
Cons ci ratio: 2.588633e-02	ci left: 4.275828e-01	ci right 4.388301e-01	k: 12996	n:30000
KS ci ratio: 1.520778e-01	ci left: 2.001685e-02	ci right 2.334335e-02	k: 649	n:30000
RAB30   30000 perm   5 sec   (5856 perm/sec)   p_kst 2.163333e-02   p_cons 4.332000e-01   p_joint 8.886667e-02

Joint ci ratio: 6.292062e-02	ci left: 8.566016e-02	ci right 9.124975e-02	k: 3537	n:40000
Cons ci ratio: 2.237637e-02	ci left: 4.292602e-01	ci right 4.389993e-01	k: 17365	n:40000
KS ci ratio: 1.306800e-01	ci left: 2.056061e-02	ci right 2.345936e-02	k: 879	n:40000
RAB30   40000 perm   7 sec   (5636 perm/sec)   p_kst 2.197500e-02   p_cons 4.341250e-01   p_joint 8.842500e-02

Joint ci ratio: 5.589413e-02	ci left: 8.705122e-02	ci right 9.207655e-02	k: 4477	n:50000
Cons ci ratio: 2.007155e-02	ci left: 4.283713e-01	ci right 4.370766e-01	k: 21636	n:50000
KS ci ratio: 1.171565e-01	ci left: 2.061553e-02	ci right 2.320039e-02	k: 1094	n:50000
RAB30   50000 perm   9 sec   (5463 perm/sec)   p_kst 2.188000e-02   p_cons 4.327200e-01   p_joint 8.954000e-02

Joint ci ratio: 5.078889e-02	ci left: 8.801820e-02	ci right 9.262152e-02	k: 5418	n:60000
Cons ci ratio: 1.829687e-02	ci left: 4.294465e-01	ci right 4.373933e-01	k: 26005	n:60000
KS ci ratio: 1.074517e-01	ci left: 2.053278e-02	ci right 2.288047e-02	k: 1301	n:60000
RAB30   60000 perm   11 sec   (5316 perm/sec)   p_kst 2.168333e-02   p_cons 4.334167e-01   p_joint 9.030000e-02

Joint ci ratio: 4.698943e-02	ci left: 8.829973e-02	ci right 9.256286e-02	k: 6329	n:70000
Cons ci ratio: 1.694222e-02	ci left: 4.296676e-01	ci right 4.370236e-01	k: 30334	n:70000
KS ci ratio: 9.934740e-02	ci left: 2.067517e-02	ci right 2.285043e-02	k: 1522	n:70000
RAB30   70000 perm   14 sec   (5173 perm/sec)   p_kst 2.174286e-02   p_cons 4.333429e-01   p_joint 9.041429e-02

Outputting figure to mutsig2_images.part000000000142/RAB30.2_628_70000_0.021743_0.43334_0.090414.png
                gene_name: RAB30
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.093 

Current progress: 63 percent done.
RAB31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.215698e-03	ci left: 9.431544e-01	ci right 9.519826e-01	k: 9477	n:10000
Cons ci ratio: 2.425064e-02	ci left: 7.143166e-01	ci right 7.319532e-01	k: 7232	n:10000
KS ci ratio: 2.482671e-02	ci left: 7.047290e-01	ci right 7.225464e-01	k: 7137	n:10000
RAB31   10000 perm   2 sec   (5767 perm/sec)   p_kst 7.137000e-01   p_cons 7.232000e-01   p_joint 9.477000e-01

Outputting figure to mutsig2_images.part000000000142/RAB31.2_616_10000_0.7137_0.7232_0.9477.png
                gene_name: RAB31
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 65 percent done.
RAB32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.698126e-02	ci left: 1.979127e-01	ci right 2.138590e-01	k: 2058	n:10000
KS ci ratio: 1.996744e-02	ci left: 7.859382e-01	ci right 8.018902e-01	k: 7940	n:10000
RAB32   10000 perm   1 sec   (6863 perm/sec)   p_kst 7.940000e-01   p_cons 2.058000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB32.2_690_10000_0.794_0.2058_1.png
                gene_name: RAB32
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
RAB33A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.919994e-02	ci left: 6.336195e-01	ci right 6.524971e-01	k: 6431	n:10000
Cons ci ratio: 5.505688e-02	ci left: 3.270391e-01	ci right 3.456564e-01	k: 3363	n:10000
KS ci ratio: 1.683940e-01	ci left: 4.705735e-02	ci right 5.580631e-02	k: 513	n:10000
RAB33A   10000 perm   1 sec   (6936 perm/sec)   p_kst 5.130000e-02   p_cons 3.363000e-01   p_joint 6.431000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 3.804549e-02	ci left: 3.401019e-01	ci right 3.533427e-01	k: 6934	n:20000
KS ci ratio: 1.162988e-01	ci left: 5.061589e-02	ci right 5.691464e-02	k: 1074	n:20000
RAB33A   20000 perm   3 sec   (6125 perm/sec)   p_kst 5.370000e-02   p_cons 3.467000e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 3.094665e-02	ci left: 3.430398e-01	ci right 3.538562e-01	k: 10453	n:30000
KS ci ratio: 9.563391e-02	ci left: 5.049159e-02	ci right 5.559541e-02	k: 1590	n:30000
RAB33A   30000 perm   5 sec   (5841 perm/sec)   p_kst 5.300000e-02   p_cons 3.484333e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB33A.2_722_30000_0.053_0.34843_1.png
                gene_name: RAB33A
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
RAB36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.047050e-02	ci left: 2.279029e-01	ci right 2.446510e-01	k: 2362	n:10000
Cons ci ratio: 1.079470e-01	ci left: 1.101767e-01	ci right 1.228477e-01	k: 1164	n:10000
KS ci ratio: 3.591382e-02	ci left: 5.337760e-01	ci right 5.533986e-01	k: 5436	n:10000
RAB36   10000 perm   2 sec   (6437 perm/sec)   p_kst 5.436000e-01   p_cons 1.164000e-01   p_joint 2.362000e-01

Joint ci ratio: 5.133260e-02	ci left: 2.199215e-01	ci right 2.315583e-01	k: 4514	n:20000
Cons ci ratio: 7.620193e-02	ci left: 1.123797e-01	ci right 1.213321e-01	k: 2336	n:20000
KS ci ratio: 2.524089e-02	ci left: 5.397193e-01	ci right 5.535671e-01	k: 10933	n:20000
RAB36   20000 perm   3 sec   (5747 perm/sec)   p_kst 5.466500e-01   p_cons 1.168000e-01   p_joint 2.257000e-01

Outputting figure to mutsig2_images.part000000000142/RAB36.2_1046_20000_0.54665_0.1168_0.2257.png
                gene_name: RAB36
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 72 percent done.
RAB37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.839688e-02	ci left: 6.463937e-01	ci right 6.651154e-01	k: 6558	n:10000
Cons ci ratio: 9.947870e-02	ci left: 1.276742e-01	ci right 1.411395e-01	k: 1343	n:10000
KS ci ratio: 3.767188e-02	ci left: 5.099533e-01	ci right 5.296352e-01	k: 5198	n:10000
RAB37   10000 perm   2 sec   (6619 perm/sec)   p_kst 5.198000e-01   p_cons 1.343000e-01   p_joint 6.558000e-01

Outputting figure to mutsig2_images.part000000000142/RAB37.2_1011_10000_0.5198_0.1343_0.6558.png
                gene_name: RAB37
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 74 percent done.
RAB39B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.614451e-02	ci left: 6.829473e-01	ci right 7.011407e-01	k: 6921	n:10000
Cons ci ratio: 5.040300e-02	ci left: 3.672894e-01	ci right 3.863825e-01	k: 3768	n:10000
KS ci ratio: 2.723572e-02	ci left: 6.651158e-01	ci right 6.835825e-01	k: 6744	n:10000
RAB39B   10000 perm   2 sec   (6528 perm/sec)   p_kst 6.744000e-01   p_cons 3.768000e-01   p_joint 6.921000e-01

Outputting figure to mutsig2_images.part000000000142/RAB39B.2_650_10000_0.6744_0.3768_0.6921.png
                gene_name: RAB39B
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 76 percent done.
RAB3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.280251e-02	ci left: 5.783790e-01	ci right 5.977697e-01	k: 5881	n:10000
KS ci ratio: 3.294486e-02	ci left: 5.762723e-01	ci right 5.956776e-01	k: 5860	n:10000
RAB3A   10000 perm   1 sec   (6725 perm/sec)   p_kst 5.860000e-01   p_cons 5.881000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RAB3A.2_679_10000_0.586_0.5881_1.png
                gene_name: RAB3A
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
RAB40B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.715456e-02	ci left: 5.168576e-01	ci right 5.365269e-01	k: 5267	n:10000
Cons ci ratio: 4.440474e-02	ci left: 4.281453e-01	ci right 4.476909e-01	k: 4379	n:10000
KS ci ratio: 5.576724e-02	ci left: 3.213802e-01	ci right 3.399186e-01	k: 3306	n:10000
RAB40B   10000 perm   2 sec   (6088 perm/sec)   p_kst 3.306000e-01   p_cons 4.379000e-01   p_joint 5.267000e-01

Outputting figure to mutsig2_images.part000000000142/RAB40B.2_861_10000_0.3306_0.4379_0.5267.png
                gene_name: RAB40B
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 80 percent done.
RAB41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.000817e-01	ci left: 1.263042e-01	ci right 1.397104e-01	k: 1329	n:10000
Cons ci ratio: 1.175954e-01	ci left: 9.408985e-02	ci right 1.059443e-01	k: 999	n:10000
KS ci ratio: 2.566102e-02	ci left: 6.909110e-01	ci right 7.089724e-01	k: 7000	n:10000
RAB41   10000 perm   1 sec   (6712 perm/sec)   p_kst 7.000000e-01   p_cons 9.990000e-02   p_joint 1.329000e-01

Joint ci ratio: 6.552052e-02	ci left: 1.468036e-01	ci right 1.567979e-01	k: 3035	n:20000
Cons ci ratio: 8.079552e-02	ci left: 1.010296e-01	ci right 1.095855e-01	k: 2105	n:20000
KS ci ratio: 1.814558e-02	ci left: 6.935952e-01	ci right 7.063466e-01	k: 14000	n:20000
RAB41   20000 perm   3 sec   (5873 perm/sec)   p_kst 7.000000e-01   p_cons 1.052500e-01   p_joint 1.517500e-01

Outputting figure to mutsig2_images.part000000000142/RAB41.2_698_20000_0.7_0.10525_0.15175.png
                gene_name: RAB41
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 83 percent done.
RAB4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.770207e-02	ci left: 5.095531e-01	ci right 5.292356e-01	k: 5194	n:10000
Cons ci ratio: 8.676772e-02	ci left: 1.620951e-01	ci right 1.768979e-01	k: 1694	n:10000
KS ci ratio: 1.721807e-02	ci left: 8.309356e-01	ci right 8.454668e-01	k: 8383	n:10000
RAB4B   10000 perm   2 sec   (6432 perm/sec)   p_kst 8.383000e-01   p_cons 1.694000e-01   p_joint 5.194000e-01

Outputting figure to mutsig2_images.part000000000142/RAB4B.2_670_10000_0.8383_0.1694_0.5194.png
                gene_name: RAB4B
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 85 percent done.
RAB6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.653384e-02	ci left: 8.418309e-01	ci right 8.559652e-01	k: 8490	n:10000
Cons ci ratio: 7.258412e-02	ci left: 2.175373e-01	ci right 2.340227e-01	k: 2257	n:10000
KS ci ratio: 1.729419e-02	ci left: 8.297144e-01	ci right 8.442887e-01	k: 8371	n:10000
RAB6A   10000 perm   2 sec   (6534 perm/sec)   p_kst 8.371000e-01   p_cons 2.257000e-01   p_joint 8.490000e-01

Outputting figure to mutsig2_images.part000000000142/RAB6A.2_769_10000_0.8371_0.2257_0.849.png
                gene_name: RAB6A
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 87 percent done.
RAB7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.659224e-02	ci left: 1.345280e-01	ci right 1.482816e-01	k: 1413	n:10000
Cons ci ratio: 7.300181e-02	ci left: 2.155637e-01	ci right 2.319975e-01	k: 2237	n:10000
KS ci ratio: 9.659224e-02	ci left: 1.345280e-01	ci right 1.482816e-01	k: 1413	n:10000
RAB7A   10000 perm   1 sec   (6725 perm/sec)   p_kst 1.413000e-01   p_cons 2.237000e-01   p_joint 1.413000e-01

Outputting figure to mutsig2_images.part000000000142/RAB7A.2_644_10000_0.1413_0.2237_0.1413.png
                gene_name: RAB7A
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.15 

Current progress: 89 percent done.
RAB7L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.367929e-02	ci left: 1.419757e-01	ci right 1.560294e-01	k: 1489	n:10000
Cons ci ratio: 1.811177e-02	ci left: 8.164937e-01	ci right 8.315171e-01	k: 8241	n:10000
KS ci ratio: 1.824960e-01	ci left: 4.006355e-02	ci right 4.820470e-02	k: 440	n:10000
RAB7L1   10000 perm   2 sec   (6652 perm/sec)   p_kst 4.400000e-02   p_cons 8.241000e-01   p_joint 1.489000e-01

Joint ci ratio: 6.678307e-02	ci left: 1.420204e-01	ci right 1.518825e-01	k: 2938	n:20000
Cons ci ratio: 1.260729e-02	ci left: 8.233044e-01	ci right 8.337998e-01	k: 16572	n:20000
KS ci ratio: 1.305247e-01	ci left: 4.032708e-02	ci right 4.600670e-02	k: 862	n:20000
RAB7L1   20000 perm   3 sec   (6005 perm/sec)   p_kst 4.310000e-02   p_cons 8.286000e-01   p_joint 1.469000e-01

Joint ci ratio: 5.513459e-02	ci left: 1.402098e-01	ci right 1.481926e-01	k: 4325	n:30000
Cons ci ratio: 1.026346e-02	ci left: 8.251286e-01	ci right 8.336742e-01	k: 24883	n:30000
KS ci ratio: 1.078647e-01	ci left: 3.988782e-02	ci right 4.446804e-02	k: 1264	n:30000
RAB7L1   30000 perm   5 sec   (5715 perm/sec)   p_kst 4.213333e-02   p_cons 8.294333e-01   p_joint 1.441667e-01

Joint ci ratio: 4.822289e-02	ci left: 1.383455e-01	ci right 1.452066e-01	k: 5670	n:40000
Cons ci ratio: 8.882334e-03	ci left: 8.259043e-01	ci right 8.332978e-01	k: 33185	n:40000
KS ci ratio: 9.473108e-02	ci left: 3.910211e-02	ci right 4.301488e-02	k: 1641	n:40000
RAB7L1   40000 perm   7 sec   (5484 perm/sec)   p_kst 4.102500e-02   p_cons 8.296250e-01   p_joint 1.417500e-01

Outputting figure to mutsig2_images.part000000000142/RAB7L1.2_632_40000_0.041025_0.82962_0.14175.png
                gene_name: RAB7L1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 91 percent done.
RAB8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.321714e-02	ci left: 5.722601e-01	ci right 5.916921e-01	k: 5820	n:10000
Cons ci ratio: 1.361522e-02	ci left: 8.861619e-01	ci right 8.984085e-01	k: 8924	n:10000
KS ci ratio: 4.625609e-02	ci left: 4.082083e-01	ci right 4.276396e-01	k: 4179	n:10000
RAB8B   10000 perm   2 sec   (6590 perm/sec)   p_kst 4.179000e-01   p_cons 8.924000e-01   p_joint 5.820000e-01

Outputting figure to mutsig2_images.part000000000142/RAB8B.2_656_10000_0.4179_0.8924_0.582.png
                gene_name: RAB8B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 93 percent done.
RABEP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.814299e-02	ci left: 8.159855e-01	ci right 8.310256e-01	k: 8236	n:10000
Cons ci ratio: 2.078242e-02	ci left: 7.723578e-01	ci right 7.886785e-01	k: 7806	n:10000
KS ci ratio: 2.331365e-02	ci left: 7.299703e-01	ci right 7.472905e-01	k: 7387	n:10000
RABEP1   10000 perm   2 sec   (5709 perm/sec)   p_kst 7.387000e-01   p_cons 7.806000e-01   p_joint 8.236000e-01

Outputting figure to mutsig2_images.part000000000142/RABEP1.2_2661_10000_0.7387_0.7806_0.8236.png
                gene_name: RABEP1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 96 percent done.
RABEP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.694732e-02	ci left: 4.010349e-01	ci right 4.204171e-01	k: 4107	n:10000
Cons ci ratio: 5.197341e-02	ci left: 3.530692e-01	ci right 3.720109e-01	k: 3625	n:10000
KS ci ratio: 4.025071e-02	ci left: 4.768587e-01	ci right 4.965490e-01	k: 4867	n:10000
RABEP2   10000 perm   2 sec   (6016 perm/sec)   p_kst 4.867000e-01   p_cons 3.625000e-01   p_joint 4.107000e-01

Outputting figure to mutsig2_images.part000000000142/RABEP2.2_1762_10000_0.4867_0.3625_0.4107.png
                gene_name: RABEP2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 98 percent done.
RABGGTA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.962467e-03	ci left: 9.345442e-01	ci right 9.439979e-01	k: 9394	n:10000
KS ci ratio: 2.717994e-02	ci left: 6.660222e-01	ci right 6.844756e-01	k: 6753	n:10000
RABGGTA   10000 perm   2 sec   (5649 perm/sec)   p_kst 6.753000e-01   p_cons 9.394000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000142/RABGGTA.2_1768_10000_0.6753_0.9394_1.png
                gene_name: RABGGTA
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000142
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 142 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1647>
Subject: Job 9894105: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1647>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000143> was used as the working directory.
Started at Sat Oct  6 00:26:56 2012
Results reported at Sat Oct  6 00:35:20 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000143.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000143.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 143  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000143.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    521.73 sec.
    Max Memory :      3592 MB
    Max Swap   :      5941 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
143
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 143
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 143: processing genes 12802 - 12891
Calculating significance of each gene.
Using projection method.
12802	RABIF	6.080569e-01
12803	RABL2A	7.194339e-01
12804	RABL2B	1
12805	RABL3	1.042365e-02
12806	RABL5	1
12807	RAC1	1
12808	RAC2	1
12809	RAC3	1
12810	RACGAP1	6.970369e-01
12811	RAD1	5.544655e-01
12812	RAD17	3.748287e-01
12813	RAD18	3.770321e-01
12814	RAD21	2.763828e-02
12815	RAD23A	7.164527e-01
12816	RAD23B	1.561052e-01
12817	RAD50	4.871443e-01
12818	RAD51	1
12819	RAD51AP1	3.390839e-01
12820	RAD51AP2	7.144035e-01
12821	RAD51C	3.715191e-01
12822	RAD51L1	5.752588e-01
12823	RAD51L3	5.057384e-01
12824	RAD52	1.306335e-01
12825	RAD54B	7.915371e-02
12826	RAD54L	7.739514e-01
12827	RAD54L2	8.879954e-01
12828	RAD9A	1
12829	RAD9B	6.272449e-01
12830	RADIL	9.956825e-01
12831	RAE1	1.486832e-01
12832	RAET1E	2.271638e-01
12833	RAET1G	1
12834	RAET1L	7.077616e-01
12835	RAF1	1.789138e-01
12836	RAG1	8.959441e-02
12837	RAG1AP1	1
12838	RAG2	8.551849e-01
12839	RAGE	3.556701e-01
12840	RAI1	9.840141e-01
12841	RAI14	3.152957e-01
12842	RAI2	4.130542e-01
12843	RALA	5.855059e-01
12844	RALB	6.728214e-01
12845	RALBP1	8.450478e-02
12846	RALGAPA1	8.848035e-02
12847	RALGAPA2	9.753480e-01
12848	RALGAPB	7.678037e-01
12849	RALGDS	9.763638e-01
12850	RALGPS1	3.123538e-01
12851	RALGPS2	6.383353e-01
12852	RALY	7.733435e-01
12853	RALYL	6.665054e-02
12854	RAMP1	3.893167e-01
12855	RAMP2	1
12856	RAMP3	5.048687e-03
12857	RAN	1.968047e-01
12858	RANBP1	5.098033e-01
12859	RANBP10	4.111100e-01
12860	RANBP17	6.408609e-01
12861	RANBP2	5.330404e-01
12862	RANBP3	8.001653e-01
12863	RANBP3L	6.424040e-02
12864	RANBP6	3.880886e-01
12865	RANBP9	8.376573e-01
12866	RANGAP1	9.308273e-01
12867	RANGRF	1
12868	RAP1A	2.466193e-01
12869	RAP1B	1.615381e-01
12870	RAP1GAP	9.598019e-01
12871	RAP1GAP2	9.909037e-01
12872	RAP1GDS1	6.825512e-01
12873	RAP2A	7.053096e-01
12874	RAP2B	7.935567e-01
12875	RAP2C	1
12876	RAPGEF1	9.307323e-01
12877	RAPGEF2	4.576990e-01
12878	RAPGEF3	7.653665e-01
12879	RAPGEF4	4.215000e-01
12880	RAPGEF5	3.916831e-01
12881	RAPGEF6	3.201342e-01
12882	RAPGEFL1	1
12883	RAPH1	9.837494e-01
12884	RAPSN	5.074548e-01
12885	RARA	1
12886	RARB	3.745124e-03
12887	RARG	1.113694e-01
12888	RARRES1	2.133669e-01
12889	RARRES2	1
12890	RARRES3	4.463688e-01
12891	RARS	1.394911e-01
Done

Running MutSig 2:
Scatter job 143: processing genes 12802 - 12891
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RANBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.565438e-01	ci left: 5.436451e-02	ci right 6.369444e-02	k: 589	n:10000
Cons ci ratio: 3.762664e-02	ci left: 5.105536e-01	ci right 5.302345e-01	k: 5204	n:10000
KS ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
RANBP2   10000 perm   3 sec   (3190 perm/sec)   p_kst 2.320000e-02   p_cons 5.204000e-01   p_joint 5.890000e-02

Joint ci ratio: 1.181094e-01	ci left: 4.910901e-02	ci right 5.532199e-02	k: 1043	n:20000
Cons ci ratio: 2.527656e-02	ci left: 5.390185e-01	ci right 5.528681e-01	k: 10919	n:20000
KS ci ratio: 1.804519e-01	ci left: 2.096705e-02	ci right 2.517319e-02	k: 460	n:20000
RANBP2   20000 perm   9 sec   (2233 perm/sec)   p_kst 2.300000e-02   p_cons 5.459500e-01   p_joint 5.215000e-02

Joint ci ratio: 9.475660e-02	ci left: 5.140387e-02	ci right 5.654961e-02	k: 1618	n:30000
Cons ci ratio: 2.098306e-02	ci left: 5.320714e-01	ci right 5.433879e-01	k: 16132	n:30000
KS ci ratio: 1.470676e-01	ci left: 2.142975e-02	ci right 2.486345e-02	k: 693	n:30000
RANBP2   30000 perm   13 sec   (2387 perm/sec)   p_kst 2.310000e-02   p_cons 5.377333e-01   p_joint 5.393333e-02

Joint ci ratio: 7.643278e-02	ci left: 5.933690e-02	ci right 6.407698e-02	k: 2467	n:40000
Cons ci ratio: 1.815501e-02	ci left: 5.332993e-01	ci right 5.430952e-01	k: 21528	n:40000
KS ci ratio: 1.283864e-01	ci left: 2.131102e-02	ci right 2.425883e-02	k: 910	n:40000
RANBP2   40000 perm   16 sec   (2468 perm/sec)   p_kst 2.275000e-02   p_cons 5.382000e-01   p_joint 6.167500e-02

Joint ci ratio: 7.721403e-02	ci left: 4.712410e-02	ci right 5.092848e-02	k: 2450	n:50000
Cons ci ratio: 1.628489e-02	ci left: 5.323972e-01	ci right 5.411585e-01	k: 26839	n:50000
KS ci ratio: 1.158649e-01	ci left: 2.108184e-02	ci right 2.369402e-02	k: 1118	n:50000
RANBP2   50000 perm   20 sec   (2477 perm/sec)   p_kst 2.236000e-02   p_cons 5.367800e-01   p_joint 4.900000e-02

Joint ci ratio: 6.915191e-02	ci left: 4.907277e-02	ci right 5.260417e-02	k: 3049	n:60000
Cons ci ratio: 1.484854e-02	ci left: 5.333670e-01	ci right 5.413627e-01	k: 32242	n:60000
KS ci ratio: 1.079613e-01	ci left: 2.033806e-02	ci right 2.267521e-02	k: 1289	n:60000
RANBP2   60000 perm   24 sec   (2511 perm/sec)   p_kst 2.148333e-02   p_cons 5.373667e-01   p_joint 5.081667e-02

Joint ci ratio: 6.778241e-02	ci left: 4.405224e-02	ci right 4.715699e-02	k: 3191	n:70000
Cons ci ratio: 1.357725e-02	ci left: 5.398441e-01	ci right 5.472380e-01	k: 38048	n:70000
KS ci ratio: 1.001913e-01	ci left: 2.032676e-02	ci right 2.248459e-02	k: 1497	n:70000
RANBP2   70000 perm   28 sec   (2527 perm/sec)   p_kst 2.138571e-02   p_cons 5.435429e-01   p_joint 4.558571e-02

Joint ci ratio: 6.050652e-02	ci left: 4.833967e-02	ci right 5.136808e-02	k: 3987	n:80000
Cons ci ratio: 1.269701e-02	ci left: 5.402157e-01	ci right 5.471311e-01	k: 43494	n:80000
KS ci ratio: 9.369246e-02	ci left: 2.040834e-02	ci right 2.242658e-02	k: 1712	n:80000
RANBP2   80000 perm   32 sec   (2527 perm/sec)   p_kst 2.140000e-02   p_cons 5.436750e-01   p_joint 4.983750e-02

Outputting figure to mutsig2_images.part000000000143/RANBP2.16_9791_80000_0.0214_0.54368_0.049837.png
                gene_name: RANBP2
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.051 

Current progress: 2 percent done.
RALGAPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.689324e-02	ci left: 8.361272e-01	ci right 8.504722e-01	k: 8434	n:10000
Cons ci ratio: 1.534259e-02	ci left: 8.603917e-01	ci right 8.737937e-01	k: 8672	n:10000
KS ci ratio: 3.425892e-02	ci left: 5.571200e-01	ci right 5.766410e-01	k: 5669	n:10000
RALGAPA1   10000 perm   2 sec   (4206 perm/sec)   p_kst 5.669000e-01   p_cons 8.672000e-01   p_joint 8.434000e-01

Outputting figure to mutsig2_images.part000000000143/RALGAPA1.13_6424_10000_0.5669_0.8672_0.8434.png
                gene_name: RALGAPA1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 4 percent done.
RAPGEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.184476e-02	ci left: 2.210904e-01	ci right 2.376675e-01	k: 2293	n:10000
KS ci ratio: 1.809304e-02	ci left: 8.167986e-01	ci right 8.318120e-01	k: 8244	n:10000
RAPGEF2   10000 perm   2 sec   (4670 perm/sec)   p_kst 8.244000e-01   p_cons 2.293000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RAPGEF2.13_4596_10000_0.8244_0.2293_1.png
                gene_name: RAPGEF2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
RAD50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.611692e-02	ci left: 5.309722e-01	ci right 5.506041e-01	k: 5408	n:10000
Cons ci ratio: 1.865892e-02	ci left: 8.075529e-01	ci right 8.228631e-01	k: 8153	n:10000
KS ci ratio: 5.577984e-02	ci left: 3.212809e-01	ci right 3.398179e-01	k: 3305	n:10000
RAD50   10000 perm   2 sec   (4827 perm/sec)   p_kst 3.305000e-01   p_cons 8.153000e-01   p_joint 5.408000e-01

Outputting figure to mutsig2_images.part000000000143/RAD50.11_4039_10000_0.3305_0.8153_0.5408.png
                gene_name: RAD50
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 7 percent done.
RAD51AP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.214964e-02	ci left: 2.756709e-01	ci right 2.934548e-01	k: 2845	n:10000
Cons ci ratio: 7.079331e-03	ci left: 9.648873e-01	ci right 9.718363e-01	k: 9685	n:10000
KS ci ratio: 8.978231e-02	ci left: 1.528644e-01	ci right 1.673342e-01	k: 1600	n:10000
RAD51AP2   10000 perm   2 sec   (4978 perm/sec)   p_kst 1.600000e-01   p_cons 9.685000e-01   p_joint 2.845000e-01

Outputting figure to mutsig2_images.part000000000143/RAD51AP2.10_3492_10000_0.16_0.9685_0.2845.png
                gene_name: RAD51AP2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 9 percent done.
RAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.255174e-02	ci left: 3.479998e-01	ci right 3.668833e-01	k: 3574	n:10000
Cons ci ratio: 9.166397e-02	ci left: 1.474675e-01	ci right 1.617343e-01	k: 1545	n:10000
KS ci ratio: 3.654802e-02	ci left: 5.250651e-01	ci right 5.447146e-01	k: 5349	n:10000
RAG1   10000 perm   2 sec   (4765 perm/sec)   p_kst 5.349000e-01   p_cons 1.545000e-01   p_joint 3.574000e-01

Outputting figure to mutsig2_images.part000000000143/RAG1.10_3136_10000_0.5349_0.1545_0.3574.png
                gene_name: RAG1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 11 percent done.
RAI14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.280039e-02	ci left: 8.977499e-01	ci right 9.094138e-01	k: 9037	n:10000
Cons ci ratio: 1.794294e-02	ci left: 8.192382e-01	ci right 8.341709e-01	k: 8268	n:10000
KS ci ratio: 1.902955e-02	ci left: 8.014606e-01	ci right 8.169589e-01	k: 8093	n:10000
RAI14   10000 perm   2 sec   (5100 perm/sec)   p_kst 8.093000e-01   p_cons 8.268000e-01   p_joint 9.037000e-01

Outputting figure to mutsig2_images.part000000000143/RAI14.9_3076_10000_0.8093_0.8268_0.9037.png
                gene_name: RAI14
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 12 percent done.
RARB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.114155e-02	ci left: 1.489391e-01	ci right 1.632618e-01	k: 1560	n:10000
Cons ci ratio: 1.069622e-01	ci left: 1.120319e-01	ci right 1.247914e-01	k: 1183	n:10000
KS ci ratio: 7.025640e-02	ci left: 2.289892e-01	ci right 2.457640e-01	k: 2373	n:10000
RARB   10000 perm   2 sec   (5486 perm/sec)   p_kst 2.373000e-01   p_cons 1.183000e-01   p_joint 1.560000e-01

Joint ci ratio: 5.852753e-02	ci left: 1.778108e-01	ci right 1.885815e-01	k: 3663	n:20000
Cons ci ratio: 7.456748e-02	ci left: 1.168548e-01	ci right 1.259556e-01	k: 2427	n:20000
KS ci ratio: 4.964497e-02	ci left: 2.317149e-01	ci right 2.435615e-01	k: 4752	n:20000
RARB   20000 perm   4 sec   (4944 perm/sec)   p_kst 2.376000e-01   p_cons 1.213500e-01   p_joint 1.831500e-01

Outputting figure to mutsig2_images.part000000000143/RARB.9_1379_20000_0.2376_0.12135_0.18315.png
                gene_name: RARB
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 14 percent done.
RAD54B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.880038e-02	ci left: 1.292403e-01	ci right 1.427725e-01	k: 1359	n:10000
Cons ci ratio: 6.099475e-02	ci left: 2.832982e-01	ci right 3.012230e-01	k: 2922	n:10000
KS ci ratio: 1.205647e-01	ci left: 8.980798e-02	ci right 1.014288e-01	k: 955	n:10000
RAD54B   10000 perm   2 sec   (4857 perm/sec)   p_kst 9.550000e-02   p_cons 2.922000e-01   p_joint 1.359000e-01

Joint ci ratio: 7.360460e-02	ci left: 1.196098e-01	ci right 1.287997e-01	k: 2483	n:20000
Cons ci ratio: 4.359851e-02	ci left: 2.815317e-01	ci right 2.941300e-01	k: 5756	n:20000
KS ci ratio: 8.707860e-02	ci left: 8.797988e-02	ci right 9.603919e-02	k: 1839	n:20000
RAD54B   20000 perm   5 sec   (4429 perm/sec)   p_kst 9.195000e-02   p_cons 2.878000e-01   p_joint 1.241500e-01

Outputting figure to mutsig2_images.part000000000143/RAD54B.8_2789_20000_0.09195_0.2878_0.12415.png
                gene_name: RAD54B
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 16 percent done.
RAPGEF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.115117e-02	ci left: 9.198691e-01	ci right 9.302817e-01	k: 9252	n:10000
Cons ci ratio: 3.177040e-02	ci left: 5.938334e-01	ci right 6.131063e-01	k: 6035	n:10000
KS ci ratio: 1.173608e-02	ci left: 9.122441e-01	ci right 9.231112e-01	k: 9178	n:10000
RAPGEF6   10000 perm   2 sec   (4430 perm/sec)   p_kst 9.178000e-01   p_cons 6.035000e-01   p_joint 9.252000e-01

Outputting figure to mutsig2_images.part000000000143/RAPGEF6.8_5404_10000_0.9178_0.6035_0.9252.png
                gene_name: RAPGEF6
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 18 percent done.
RAPGEF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.627086e-03	ci left: 9.769554e-01	ci right 9.825602e-01	k: 9799	n:10000
Cons ci ratio: 2.400855e-02	ci left: 7.183550e-01	ci right 7.359125e-01	k: 7272	n:10000
KS ci ratio: 1.344460e-02	ci left: 8.886212e-01	ci right 9.007478e-01	k: 8948	n:10000
RAPGEF4   10000 perm   2 sec   (4879 perm/sec)   p_kst 8.948000e-01   p_cons 7.272000e-01   p_joint 9.799000e-01

Outputting figure to mutsig2_images.part000000000143/RAPGEF4.7_3176_10000_0.8948_0.7272_0.9799.png
                gene_name: RAPGEF4
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 19 percent done.
RAD21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.666916e-01	ci left: 4.801742e-02	ci right 5.684561e-02	k: 523	n:10000
Cons ci ratio: 7.832462e-02	ci left: 1.923954e-01	ci right 2.081796e-01	k: 2002	n:10000
KS ci ratio: 2.601440e-01	ci left: 1.930852e-02	ci right 2.517438e-02	k: 221	n:10000
RAD21   10000 perm   2 sec   (5426 perm/sec)   p_kst 2.210000e-02   p_cons 2.002000e-01   p_joint 5.230000e-02

Joint ci ratio: 1.790652e-01	ci left: 2.130163e-02	ci right 2.553849e-02	k: 467	n:20000
Cons ci ratio: 5.863531e-02	ci left: 1.772671e-01	ci right 1.880253e-01	k: 3652	n:20000
KS ci ratio: 1.798538e-01	ci left: 2.111042e-02	ci right 2.532976e-02	k: 463	n:20000
RAD21   20000 perm   4 sec   (4896 perm/sec)   p_kst 2.315000e-02   p_cons 1.826000e-01   p_joint 2.335000e-02

Joint ci ratio: 1.670048e-01	ci left: 1.652569e-02	ci right 1.956867e-02	k: 540	n:30000
Cons ci ratio: 4.997806e-02	ci left: 1.658968e-01	ci right 1.744338e-01	k: 5104	n:30000
KS ci ratio: 1.446328e-01	ci left: 2.216905e-02	ci right 2.565733e-02	k: 716	n:30000
RAD21   30000 perm   6 sec   (4694 perm/sec)   p_kst 2.386667e-02   p_cons 1.701333e-01   p_joint 1.800000e-02

Joint ci ratio: 1.414044e-01	ci left: 1.751566e-02	ci right 2.020484e-02	k: 753	n:40000
Cons ci ratio: 4.314749e-02	ci left: 1.673465e-01	ci right 1.747513e-01	k: 6841	n:40000
KS ci ratio: 1.261376e-01	ci left: 2.208610e-02	ci right 2.508362e-02	k: 942	n:40000
RAD21   40000 perm   9 sec   (4560 perm/sec)   p_kst 2.355000e-02   p_cons 1.710250e-01   p_joint 1.882500e-02

Joint ci ratio: 9.276711e-02	ci left: 3.287823e-02	ci right 3.609611e-02	k: 1723	n:50000
Cons ci ratio: 3.857194e-02	ci left: 1.678876e-01	ci right 1.745106e-01	k: 8559	n:50000
KS ci ratio: 1.118890e-01	ci left: 2.261782e-02	ci right 2.531784e-02	k: 1197	n:50000
RAD21   50000 perm   11 sec   (4453 perm/sec)   p_kst 2.394000e-02   p_cons 1.711800e-01   p_joint 3.446000e-02

Joint ci ratio: 9.591660e-02	ci left: 2.578278e-02	ci right 2.839657e-02	k: 1624	n:60000
Cons ci ratio: 3.526925e-02	ci left: 1.677137e-01	ci right 1.737516e-01	k: 10243	n:60000
KS ci ratio: 1.021622e-01	ci left: 2.272510e-02	ci right 2.518791e-02	k: 1436	n:60000
RAD21   60000 perm   14 sec   (4359 perm/sec)   p_kst 2.393333e-02   p_cons 1.707167e-01   p_joint 2.706667e-02

Joint ci ratio: 7.742137e-02	ci left: 3.395912e-02	ci right 3.670814e-02	k: 2472	n:70000
Cons ci ratio: 3.278430e-02	ci left: 1.668123e-01	ci right 1.723865e-01	k: 11871	n:70000
KS ci ratio: 9.524077e-02	ci left: 2.250207e-02	ci right 2.476623e-02	k: 1653	n:70000
RAD21   70000 perm   16 sec   (4275 perm/sec)   p_kst 2.361429e-02   p_cons 1.695857e-01   p_joint 3.531429e-02

Outputting figure to mutsig2_images.part000000000143/RAD21.6_1948_70000_0.023614_0.16959_0.035314.png
                gene_name: RAD21
               theta_stop: 0.095 
                    nperm: 70000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.037 

Current progress: 21 percent done.
RAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.086341e-01	ci left: 1.089077e-01	ci right 1.215175e-01	k: 1151	n:10000
Cons ci ratio: 1.008704e-01	ci left: 1.245431e-01	ci right 1.378726e-01	k: 1311	n:10000
KS ci ratio: 1.224866e-01	ci left: 8.718231e-02	ci right 9.865611e-02	k: 928	n:10000
RAF1   10000 perm   2 sec   (6112 perm/sec)   p_kst 9.280000e-02   p_cons 1.311000e-01   p_joint 1.151000e-01

Joint ci ratio: 1.273938e-01	ci left: 4.231371e-02	ci right 4.811944e-02	k: 903	n:20000
Cons ci ratio: 7.109371e-02	ci left: 1.272391e-01	ci right 1.366682e-01	k: 2638	n:20000
KS ci ratio: 8.464332e-02	ci left: 9.273591e-02	ci right 1.009817e-01	k: 1936	n:20000
RAF1   20000 perm   4 sec   (5439 perm/sec)   p_kst 9.680000e-02   p_cons 1.319000e-01   p_joint 4.515000e-02

Joint ci ratio: 9.294970e-02	ci left: 5.335946e-02	ci right 5.859361e-02	k: 1678	n:30000
Cons ci ratio: 5.786721e-02	ci left: 1.288143e-01	ci right 1.365237e-01	k: 3979	n:30000
KS ci ratio: 6.914437e-02	ci left: 9.341093e-02	ci right 1.001341e-01	k: 2902	n:30000
RAF1   30000 perm   6 sec   (5141 perm/sec)   p_kst 9.673333e-02   p_cons 1.326333e-01   p_joint 5.593333e-02

Outputting figure to mutsig2_images.part000000000143/RAF1.6_2011_30000_0.096733_0.13263_0.055933.png
                gene_name: RAF1
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.059 

Current progress: 23 percent done.
RAI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.115267e-01	ci left: 2.968021e-02	ci right 3.679509e-02	k: 331	n:10000
Cons ci ratio: 1.236641e-01	ci left: 8.562704e-02	ci right 9.701233e-02	k: 912	n:10000
KS ci ratio: 1.495306e-01	ci left: 5.947341e-02	ci right 6.918228e-02	k: 642	n:10000
RAI1   10000 perm   2 sec   (4176 perm/sec)   p_kst 6.420000e-02   p_cons 9.120000e-02   p_joint 3.310000e-02

Joint ci ratio: 1.298967e-01	ci left: 4.071458e-02	ci right 4.641908e-02	k: 870	n:20000
Cons ci ratio: 8.744546e-02	ci left: 8.729371e-02	ci right 9.532556e-02	k: 1825	n:20000
KS ci ratio: 1.080444e-01	ci left: 5.840428e-02	ci right 6.512383e-02	k: 1234	n:20000
RAI1   20000 perm   5 sec   (3819 perm/sec)   p_kst 6.170000e-02   p_cons 9.125000e-02   p_joint 4.350000e-02

Joint ci ratio: 1.226391e-01	ci left: 3.091021e-02	ci right 3.498090e-02	k: 987	n:30000
Cons ci ratio: 7.138506e-02	ci left: 8.806365e-02	ci right 9.461574e-02	k: 2739	n:30000
KS ci ratio: 8.765260e-02	ci left: 5.975402e-02	ci right 6.526442e-02	k: 1874	n:30000
RAI1   30000 perm   8 sec   (3705 perm/sec)   p_kst 6.246667e-02   p_cons 9.130000e-02   p_joint 3.290000e-02

Joint ci ratio: 9.687349e-02	ci left: 3.741683e-02	ci right 4.125042e-02	k: 1572	n:40000
Cons ci ratio: 6.206797e-02	ci left: 8.785365e-02	ci right 9.350593e-02	k: 3626	n:40000
KS ci ratio: 7.644928e-02	ci left: 5.931234e-02	ci right 6.405153e-02	k: 2466	n:40000
RAI1   40000 perm   11 sec   (3614 perm/sec)   p_kst 6.165000e-02   p_cons 9.065000e-02   p_joint 3.930000e-02

Outputting figure to mutsig2_images.part000000000143/RAI1.6_5737_40000_0.06165_0.09065_0.0393.png
                gene_name: RAI1
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.041 

Current progress: 25 percent done.
RALBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.597900e-02	ci left: 5.328747e-01	ci right 5.525004e-01	k: 5427	n:10000
Cons ci ratio: 6.115731e-02	ci left: 2.822084e-01	ci right 3.001135e-01	k: 2911	n:10000
KS ci ratio: 3.770207e-02	ci left: 5.095531e-01	ci right 5.292356e-01	k: 5194	n:10000
RALBP1   10000 perm   2 sec   (5527 perm/sec)   p_kst 5.194000e-01   p_cons 2.911000e-01   p_joint 5.427000e-01

Outputting figure to mutsig2_images.part000000000143/RALBP1.6_2004_10000_0.5194_0.2911_0.5427.png
                gene_name: RALBP1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 26 percent done.
RALGAPA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.328950e-02	ci left: 7.303745e-01	ci right 7.476861e-01	k: 7391	n:10000
KS ci ratio: 1.098941e-02	ci left: 9.219324e-01	ci right 9.322172e-01	k: 9272	n:10000
RALGAPA2   10000 perm   2 sec   (4274 perm/sec)   p_kst 9.272000e-01   p_cons 7.391000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RALGAPA2.6_5778_10000_0.9272_0.7391_1.png
                gene_name: RALGAPA2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
RALGAPB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.618673e-02	ci left: 1.639619e-01	ci right 1.788300e-01	k: 1713	n:10000
Cons ci ratio: 2.196193e-02	ci left: 7.526172e-01	ci right 7.694305e-01	k: 7611	n:10000
KS ci ratio: 1.259546e-01	ci left: 8.271234e-02	ci right 9.392883e-02	k: 882	n:10000
RALGAPB   10000 perm   2 sec   (4483 perm/sec)   p_kst 8.820000e-02   p_cons 7.611000e-01   p_joint 1.713000e-01

Joint ci ratio: 5.136934e-02	ci left: 2.196738e-01	ci right 2.313061e-01	k: 4509	n:20000
Cons ci ratio: 1.549746e-02	ci left: 7.558839e-01	ci right 7.677399e-01	k: 15237	n:20000
KS ci ratio: 8.794992e-02	ci left: 8.636261e-02	ci right 9.435695e-02	k: 1806	n:20000
RALGAPB   20000 perm   5 sec   (4090 perm/sec)   p_kst 9.030000e-02   p_cons 7.618500e-01   p_joint 2.254500e-01

Outputting figure to mutsig2_images.part000000000143/RALGAPB.6_4601_20000_0.0903_0.76185_0.22545.png
                gene_name: RALGAPB
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 30 percent done.
RANBP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.127940e-02	ci left: 9.182193e-01	ci right 9.287325e-01	k: 9236	n:10000
Cons ci ratio: 3.103856e-02	ci left: 6.049788e-01	ci right 6.241544e-01	k: 6146	n:10000
KS ci ratio: 2.868672e-02	ci left: 6.417660e-01	ci right 6.605459e-01	k: 6512	n:10000
RANBP6   10000 perm   2 sec   (5150 perm/sec)   p_kst 6.512000e-01   p_cons 6.146000e-01   p_joint 9.236000e-01

Outputting figure to mutsig2_images.part000000000143/RANBP6.6_3322_10000_0.6512_0.6146_0.9236.png
                gene_name: RANBP6
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 32 percent done.
RAPGEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.570014e-02	ci left: 8.548806e-01	ci right 8.685080e-01	k: 8618	n:10000
Cons ci ratio: 3.716947e-02	ci left: 5.166574e-01	ci right 5.363271e-01	k: 5265	n:10000
KS ci ratio: 3.453175e-02	ci left: 5.532111e-01	ci right 5.727522e-01	k: 5630	n:10000
RAPGEF1   10000 perm   2 sec   (5348 perm/sec)   p_kst 5.630000e-01   p_cons 5.265000e-01   p_joint 8.618000e-01

Outputting figure to mutsig2_images.part000000000143/RAPGEF1.6_3398_10000_0.563_0.5265_0.8618.png
                gene_name: RAPGEF1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 33 percent done.
RANBP3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.844721e-02	ci left: 6.455889e-01	ci right 6.643208e-01	k: 6550	n:10000
KS ci ratio: 1.335882e-02	ci left: 8.898512e-01	ci right 9.019170e-01	k: 8960	n:10000
RANBP3L   10000 perm   2 sec   (5476 perm/sec)   p_kst 8.960000e-01   p_cons 6.550000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RANBP3L.5_1533_10000_0.896_0.655_1.png
                gene_name: RANBP3L
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
RARG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.701526e-02	ci left: 4.003376e-01	ci right 4.197148e-01	k: 4100	n:10000
Cons ci ratio: 3.538873e-02	ci left: 5.410874e-01	ci right 5.606829e-01	k: 5509	n:10000
KS ci ratio: 5.349131e-02	ci left: 3.399509e-01	ci right 3.587369e-01	k: 3493	n:10000
RARG   10000 perm   2 sec   (6119 perm/sec)   p_kst 3.493000e-01   p_cons 5.509000e-01   p_joint 4.100000e-01

Outputting figure to mutsig2_images.part000000000143/RARG.5_1552_10000_0.3493_0.5509_0.41.png
                gene_name: RARG
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 37 percent done.
RAD17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.701452e-02	ci left: 8.341928e-01	ci right 8.486078e-01	k: 8415	n:10000
Cons ci ratio: 3.995386e-02	ci left: 4.805560e-01	ci right 5.002496e-01	k: 4904	n:10000
KS ci ratio: 1.952111e-02	ci left: 7.933421e-01	ci right 8.090821e-01	k: 8013	n:10000
RAD17   10000 perm   2 sec   (5605 perm/sec)   p_kst 8.013000e-01   p_cons 4.904000e-01   p_joint 8.415000e-01

Outputting figure to mutsig2_images.part000000000143/RAD17.4_2123_10000_0.8013_0.4904_0.8415.png
                gene_name: RAD17
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 39 percent done.
RAD52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.208869e-02	ci left: 7.504927e-01	ci right 7.673562e-01	k: 7590	n:10000
Cons ci ratio: 3.894413e-02	ci left: 4.933506e-01	ci right 5.130475e-01	k: 5032	n:10000
KS ci ratio: 2.875620e-02	ci left: 6.406595e-01	ci right 6.594530e-01	k: 6501	n:10000
RAD52   10000 perm   2 sec   (6207 perm/sec)   p_kst 6.501000e-01   p_cons 5.032000e-01   p_joint 7.590000e-01

Outputting figure to mutsig2_images.part000000000143/RAD52.4_1301_10000_0.6501_0.5032_0.759.png
                gene_name: RAD52
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 40 percent done.
RAD54L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.331581e-02	ci left: 8.904663e-01	ci right 9.025016e-01	k: 8966	n:10000
KS ci ratio: 1.814299e-02	ci left: 8.159855e-01	ci right 8.310256e-01	k: 8236	n:10000
RAD54L2   10000 perm   2 sec   (4842 perm/sec)   p_kst 8.236000e-01   p_cons 8.966000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RAD54L2.4_4488_10000_0.8236_0.8966_1.png
                gene_name: RAD54L2
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
RAD9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.813050e-02	ci left: 8.161888e-01	ci right 8.312222e-01	k: 8238	n:10000
KS ci ratio: 3.167093e-02	ci left: 5.953393e-01	ci right 6.145996e-01	k: 6050	n:10000
RAD9B   10000 perm   2 sec   (6255 perm/sec)   p_kst 6.050000e-01   p_cons 8.238000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RAD9B.4_1338_10000_0.605_0.8238_1.png
                gene_name: RAD9B
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
RALGPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.048988e-02	ci left: 1.508034e-01	ci right 1.651964e-01	k: 1579	n:10000
Cons ci ratio: 3.371106e-02	ci left: 5.650398e-01	ci right 5.845166e-01	k: 5748	n:10000
KS ci ratio: 1.467453e-01	ci left: 6.169346e-02	ci right 7.156083e-02	k: 665	n:10000
RALGPS1   10000 perm   2 sec   (5780 perm/sec)   p_kst 6.650000e-02   p_cons 5.748000e-01   p_joint 1.579000e-01

Joint ci ratio: 5.444295e-02	ci left: 2.002151e-01	ci right 2.114706e-01	k: 4116	n:20000
Cons ci ratio: 2.361274e-02	ci left: 5.725724e-01	ci right 5.863045e-01	k: 11589	n:20000
KS ci ratio: 1.037251e-01	ci left: 6.318274e-02	ci right 7.014389e-02	k: 1332	n:20000
RALGPS1   20000 perm   4 sec   (5173 perm/sec)   p_kst 6.660000e-02   p_cons 5.794500e-01   p_joint 2.058000e-01

Joint ci ratio: 5.016765e-02	ci left: 1.648409e-01	ci right 1.733566e-01	k: 5072	n:30000
Cons ci ratio: 1.933884e-02	ci left: 5.723540e-01	ci right 5.835643e-01	k: 17339	n:30000
KS ci ratio: 8.458987e-02	ci left: 6.396742e-02	ci right 6.965016e-02	k: 2003	n:30000
RALGPS1   30000 perm   6 sec   (4940 perm/sec)   p_kst 6.676667e-02   p_cons 5.779667e-01   p_joint 1.690667e-01

Outputting figure to mutsig2_images.part000000000143/RALGPS1.4_1746_30000_0.066767_0.57797_0.16907.png
                gene_name: RALGPS1
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 46 percent done.
RALYL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.635428e-02	ci left: 1.351158e-01	ci right 1.488935e-01	k: 1419	n:10000
Cons ci ratio: 1.151171e-01	ci left: 9.788810e-02	ci right 1.099437e-01	k: 1038	n:10000
KS ci ratio: 4.665763e-02	ci left: 4.040236e-01	ci right 4.234267e-01	k: 4137	n:10000
RALYL   10000 perm   2 sec   (6058 perm/sec)   p_kst 4.137000e-01   p_cons 1.038000e-01   p_joint 1.419000e-01

Joint ci ratio: 5.814898e-02	ci left: 1.797385e-01	ci right 1.905532e-01	k: 3702	n:20000
Cons ci ratio: 8.329303e-02	ci left: 9.553217e-02	ci right 1.038846e-01	k: 1993	n:20000
KS ci ratio: 3.288980e-02	ci left: 4.084085e-01	ci right 4.221162e-01	k: 8305	n:20000
RALYL   20000 perm   4 sec   (5388 perm/sec)   p_kst 4.152500e-01   p_cons 9.965000e-02   p_joint 1.851000e-01

Outputting figure to mutsig2_images.part000000000143/RALYL.4_951_20000_0.41525_0.09965_0.1851.png
                gene_name: RALYL
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 47 percent done.
RAMP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.615707e-02	ci left: 1.356056e-01	ci right 1.494034e-01	k: 1424	n:10000
Cons ci ratio: 9.480348e-02	ci left: 1.390351e-01	ci right 1.529718e-01	k: 1459	n:10000
KS ci ratio: 1.426573e-01	ci left: 6.517166e-02	ci right 7.528044e-02	k: 701	n:10000
RAMP3   10000 perm   1 sec   (6767 perm/sec)   p_kst 7.010000e-02   p_cons 1.459000e-01   p_joint 1.424000e-01

Joint ci ratio: 1.024142e-01	ci left: 6.474425e-02	ci right 7.178190e-02	k: 1364	n:20000
Cons ci ratio: 6.620319e-02	ci left: 1.441899e-01	ci right 1.541124e-01	k: 2982	n:20000
KS ci ratio: 1.009534e-01	ci left: 6.655043e-02	ci right 7.367517e-02	k: 1401	n:20000
RAMP3   20000 perm   3 sec   (5926 perm/sec)   p_kst 7.005000e-02   p_cons 1.491000e-01   p_joint 6.820000e-02

Joint ci ratio: 9.786246e-02	ci left: 4.827697e-02	ci right 5.327714e-02	k: 1522	n:30000
Cons ci ratio: 5.418669e-02	ci left: 1.444936e-01	ci right 1.525745e-01	k: 4455	n:30000
KS ci ratio: 8.255541e-02	ci left: 6.700709e-02	ci right 7.280987e-02	k: 2096	n:30000
RAMP3   30000 perm   5 sec   (5610 perm/sec)   p_kst 6.986667e-02   p_cons 1.485000e-01   p_joint 5.073333e-02

Outputting figure to mutsig2_images.part000000000143/RAMP3.4_459_30000_0.069867_0.1485_0.050733.png
                gene_name: RAMP3
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.053 

Current progress: 49 percent done.
RANBP17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.815626e-02	ci left: 3.032226e-01	ci right 3.214868e-01	k: 3123	n:10000
Cons ci ratio: 7.058784e-02	ci left: 2.273104e-01	ci right 2.440439e-01	k: 2356	n:10000
KS ci ratio: 9.408775e-02	ci left: 1.408974e-01	ci right 1.549084e-01	k: 1478	n:10000
RANBP17   10000 perm   2 sec   (5186 perm/sec)   p_kst 1.478000e-01   p_cons 2.356000e-01   p_joint 3.123000e-01

Outputting figure to mutsig2_images.part000000000143/RANBP17.4_3379_10000_0.1478_0.2356_0.3123.png
                gene_name: RANBP17
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 51 percent done.
RAPGEF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.358022e-02	ci left: 1.727107e-01	ci right 1.878760e-01	k: 1802	n:10000
Cons ci ratio: 1.506606e-01	ci left: 5.860517e-02	ci right 6.825107e-02	k: 633	n:10000
KS ci ratio: 3.593554e-02	ci left: 5.334756e-01	ci right 5.530992e-01	k: 5433	n:10000
RAPGEF3   10000 perm   2 sec   (5349 perm/sec)   p_kst 5.433000e-01   p_cons 6.330000e-02   p_joint 1.802000e-01

Joint ci ratio: 6.187209e-02	ci left: 1.619533e-01	ci right 1.723436e-01	k: 3342	n:20000
Cons ci ratio: 1.047818e-01	ci left: 6.196321e-02	ci right 6.886379e-02	k: 1307	n:20000
KS ci ratio: 2.554022e-02	ci left: 5.338631e-01	ci right 5.477251e-01	k: 10816	n:20000
RAPGEF3   20000 perm   4 sec   (4832 perm/sec)   p_kst 5.408000e-01   p_cons 6.535000e-02   p_joint 1.671000e-01

Joint ci ratio: 4.715855e-02	ci left: 1.827668e-01	ci right 1.916272e-01	k: 5615	n:30000
Cons ci ratio: 8.635796e-02	ci left: 6.148468e-02	ci right 6.706674e-02	k: 1927	n:30000
KS ci ratio: 2.096477e-02	ci left: 5.325051e-01	ci right 5.438208e-01	k: 16145	n:30000
RAPGEF3   30000 perm   6 sec   (4618 perm/sec)   p_kst 5.381667e-01   p_cons 6.423333e-02   p_joint 1.871667e-01

Outputting figure to mutsig2_images.part000000000143/RAPGEF3.4_2884_30000_0.53817_0.064233_0.18717.png
                gene_name: RAPGEF3
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 53 percent done.
RARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.544597e-02	ci left: 5.402861e-01	ci right 5.598847e-01	k: 5501	n:10000
Cons ci ratio: 4.233711e-02	ci left: 4.516917e-01	ci right 4.713307e-01	k: 4615	n:10000
KS ci ratio: 4.711256e-02	ci left: 3.993415e-01	ci right 4.187115e-01	k: 4090	n:10000
RARS   10000 perm   2 sec   (5535 perm/sec)   p_kst 4.090000e-01   p_cons 4.615000e-01   p_joint 5.501000e-01

Outputting figure to mutsig2_images.part000000000143/RARS.4_2043_10000_0.409_0.4615_0.5501.png
                gene_name: RARS
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 54 percent done.
RABL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.011813e-01	ci left: 1.238583e-01	ci right 1.371578e-01	k: 1304	n:10000
Cons ci ratio: 4.126282e-02	ci left: 4.644718e-01	ci right 4.841432e-01	k: 4743	n:10000
KS ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
RABL3   10000 perm   1 sec   (6713 perm/sec)   p_kst 8.370000e-02   p_cons 4.743000e-01   p_joint 1.304000e-01

Joint ci ratio: 6.680972e-02	ci left: 1.419218e-01	ci right 1.517811e-01	k: 2936	n:20000
Cons ci ratio: 2.893206e-02	ci left: 4.716054e-01	ci right 4.855008e-01	k: 9571	n:20000
KS ci ratio: 9.159097e-02	ci left: 8.004448e-02	ci right 8.777699e-02	k: 1677	n:20000
RABL3   20000 perm   3 sec   (5963 perm/sec)   p_kst 8.385000e-02   p_cons 4.785500e-01   p_joint 1.468000e-01

Outputting figure to mutsig2_images.part000000000143/RABL3.3_743_20000_0.08385_0.47855_0.1468.png
                gene_name: RABL3
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 56 percent done.
RAD18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.227196e-02	ci left: 2.748786e-01	ci right 2.926475e-01	k: 2837	n:10000
Cons ci ratio: 5.392946e-02	ci left: 3.362752e-01	ci right 3.550148e-01	k: 3456	n:10000
KS ci ratio: 6.154471e-02	ci left: 2.796327e-01	ci right 2.974906e-01	k: 2885	n:10000
RAD18   10000 perm   2 sec   (6142 perm/sec)   p_kst 2.885000e-01   p_cons 3.456000e-01   p_joint 2.837000e-01

Outputting figure to mutsig2_images.part000000000143/RAD18.3_1540_10000_0.2885_0.3456_0.2837.png
                gene_name: RAD18
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 58 percent done.
RAD23B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.221025e-02	ci left: 5.872089e-01	ci right 6.065346e-01	k: 5969	n:10000
Cons ci ratio: 1.516850e-01	ci left: 5.783363e-02	ci right 6.742310e-02	k: 625	n:10000
KS ci ratio: 2.722332e-02	ci left: 6.653172e-01	ci right 6.837810e-01	k: 6746	n:10000
RAD23B   10000 perm   2 sec   (5646 perm/sec)   p_kst 6.746000e-01   p_cons 6.250000e-02   p_joint 5.969000e-01

Joint ci ratio: 3.158729e-02	ci left: 4.281142e-01	ci right 4.419048e-01	k: 8700	n:20000
Cons ci ratio: 1.068055e-01	ci left: 5.972022e-02	ci right 6.650747e-02	k: 1261	n:20000
KS ci ratio: 1.907753e-02	ci left: 6.720268e-01	ci right 6.850213e-01	k: 13571	n:20000
RAD23B   20000 perm   4 sec   (5384 perm/sec)   p_kst 6.785500e-01   p_cons 6.305000e-02   p_joint 4.350000e-01

Joint ci ratio: 2.440673e-02	ci left: 4.566454e-01	ci right 4.679619e-01	k: 13869	n:30000
Cons ci ratio: 8.581225e-02	ci left: 6.223591e-02	ci right 6.784869e-02	k: 1950	n:30000
KS ci ratio: 1.559179e-02	ci left: 6.728129e-01	ci right 6.834192e-01	k: 20344	n:30000
RAD23B   30000 perm   6 sec   (5232 perm/sec)   p_kst 6.781333e-01   p_cons 6.500000e-02   p_joint 4.623000e-01

Outputting figure to mutsig2_images.part000000000143/RAD23B.3_1270_30000_0.67813_0.065_0.4623.png
                gene_name: RAD23B
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 60 percent done.
RAD51AP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.251639e-02	ci left: 4.495956e-01	ci right 4.692281e-01	k: 4594	n:10000
Cons ci ratio: 6.535019e-02	ci left: 2.558748e-01	ci right 2.732625e-01	k: 2645	n:10000
KS ci ratio: 4.624658e-02	ci left: 4.083079e-01	ci right 4.277399e-01	k: 4180	n:10000
RAD51AP1   10000 perm   2 sec   (6003 perm/sec)   p_kst 4.180000e-01   p_cons 2.645000e-01   p_joint 4.594000e-01

Outputting figure to mutsig2_images.part000000000143/RAD51AP1.3_1099_10000_0.418_0.2645_0.4594.png
                gene_name: RAD51AP1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 61 percent done.
RAD51L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.359337e-02	ci left: 4.372220e-01	ci right 4.568089e-01	k: 4470	n:10000
KS ci ratio: 2.058215e-02	ci left: 7.757010e-01	ci right 7.919333e-01	k: 7839	n:10000
RAD51L3   10000 perm   2 sec   (6328 perm/sec)   p_kst 7.839000e-01   p_cons 4.470000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RAD51L3.3_1210_10000_0.7839_0.447_1.png
                gene_name: RAD51L3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
RAD54L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.089238e-02	ci left: 4.689664e-01	ci right 4.886460e-01	k: 4788	n:10000
Cons ci ratio: 3.255266e-02	ci left: 5.820912e-01	ci right 6.014553e-01	k: 5918	n:10000
KS ci ratio: 4.645628e-02	ci left: 4.061158e-01	ci right 4.255332e-01	k: 4158	n:10000
RAD54L   10000 perm   2 sec   (5882 perm/sec)   p_kst 4.158000e-01   p_cons 5.918000e-01   p_joint 4.788000e-01

Outputting figure to mutsig2_images.part000000000143/RAD54L.3_2316_10000_0.4158_0.5918_0.4788.png
                gene_name: RAD54L
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 65 percent done.
RAE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.706816e-01	ci left: 4.580994e-02	ci right 5.445453e-02	k: 500	n:10000
Cons ci ratio: 3.898779e-03	ci left: 9.881795e-01	ci right 9.921271e-01	k: 9903	n:10000
KS ci ratio: 2.083034e-01	ci left: 3.062918e-02	ci right 3.784546e-02	k: 341	n:10000
RAE1   10000 perm   2 sec   (6314 perm/sec)   p_kst 3.410000e-02   p_cons 9.903000e-01   p_joint 5.000000e-02

Joint ci ratio: 1.151153e-01	ci left: 5.163709e-02	ci right 5.799312e-02	k: 1095	n:20000
Cons ci ratio: 3.002473e-03	ci left: 9.868710e-01	ci right 9.898845e-01	k: 19769	n:20000
KS ci ratio: 1.449005e-01	ci left: 3.273699e-02	ci right 3.789925e-02	k: 705	n:20000
RAE1   20000 perm   4 sec   (5603 perm/sec)   p_kst 3.525000e-02   p_cons 9.884500e-01   p_joint 5.475000e-02

Joint ci ratio: 9.248383e-02	ci left: 5.388111e-02	ci right 5.913852e-02	k: 1694	n:30000
Cons ci ratio: 2.397587e-03	ci left: 9.876843e-01	ci right 9.900863e-01	k: 29668	n:30000
KS ci ratio: 1.168889e-01	ci left: 3.401751e-02	ci right 3.827293e-02	k: 1083	n:30000
RAE1   30000 perm   6 sec   (5321 perm/sec)   p_kst 3.610000e-02   p_cons 9.889333e-01   p_joint 5.646667e-02

Joint ci ratio: 8.073934e-02	ci left: 5.339874e-02	ci right 5.791604e-02	k: 2225	n:40000
Cons ci ratio: 2.095250e-03	ci left: 9.876415e-01	ci right 9.897366e-01	k: 39549	n:40000
KS ci ratio: 1.022363e-01	ci left: 3.363478e-02	ci right 3.728306e-02	k: 1417	n:40000
RAE1   40000 perm   8 sec   (5144 perm/sec)   p_kst 3.542500e-02   p_cons 9.887250e-01   p_joint 5.562500e-02

Joint ci ratio: 7.261023e-02	ci left: 5.307655e-02	ci right 5.709530e-02	k: 2753	n:50000
Cons ci ratio: 1.867351e-03	ci left: 9.878387e-01	ci right 9.897040e-01	k: 49440	n:50000
KS ci ratio: 9.207788e-02	ci left: 3.336706e-02	ci right 3.660722e-02	k: 1748	n:50000
RAE1   50000 perm   10 sec   (5007 perm/sec)   p_kst 3.496000e-02   p_cons 9.888000e-01   p_joint 5.506000e-02

Outputting figure to mutsig2_images.part000000000143/RAE1.3_1151_50000_0.03496_0.9888_0.05506.png
                gene_name: RAE1
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.037 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 67 percent done.
RAGE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.133093e-03	ci left: 9.868662e-01	ci right 9.910417e-01	k: 9891	n:10000
Cons ci ratio: 4.506925e-02	ci left: 4.208664e-01	ci right 4.403740e-01	k: 4306	n:10000
KS ci ratio: 2.249902e-02	ci left: 7.436154e-01	ci right 7.606374e-01	k: 7522	n:10000
RAGE   10000 perm   2 sec   (6257 perm/sec)   p_kst 7.522000e-01   p_cons 4.306000e-01   p_joint 9.891000e-01

Outputting figure to mutsig2_images.part000000000143/RAGE.3_1308_10000_0.7522_0.4306_0.9891.png
                gene_name: RAGE
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 68 percent done.
RAI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.988200e-02	ci left: 4.814554e-01	ci right 5.011497e-01	k: 4913	n:10000
Cons ci ratio: 4.503252e-02	ci left: 4.212652e-01	ci right 4.407750e-01	k: 4310	n:10000
KS ci ratio: 5.720887e-02	ci left: 3.102655e-01	ci right 3.286398e-01	k: 3194	n:10000
RAI2   10000 perm   2 sec   (5927 perm/sec)   p_kst 3.194000e-01   p_cons 4.310000e-01   p_joint 4.913000e-01

Outputting figure to mutsig2_images.part000000000143/RAI2.3_1597_10000_0.3194_0.431_0.4913.png
                gene_name: RAI2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 70 percent done.
RALGPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.107936e-02	ci left: 7.673949e-01	ci right 7.838442e-01	k: 7757	n:10000
Cons ci ratio: 2.325328e-02	ci left: 7.309807e-01	ci right 7.482795e-01	k: 7397	n:10000
KS ci ratio: 3.628446e-02	ci left: 5.286693e-01	ci right 5.483083e-01	k: 5385	n:10000
RALGPS2   10000 perm   2 sec   (5853 perm/sec)   p_kst 5.385000e-01   p_cons 7.397000e-01   p_joint 7.757000e-01

Outputting figure to mutsig2_images.part000000000143/RALGPS2.3_1828_10000_0.5385_0.7397_0.7757.png
                gene_name: RALGPS2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 72 percent done.
RANBP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.289056e-03	ci left: 9.953687e-01	ci right 9.977274e-01	k: 9967	n:10000
KS ci ratio: 3.117628e-02	ci left: 6.028698e-01	ci right 6.220646e-01	k: 6125	n:10000
RANBP10   10000 perm   2 sec   (5770 perm/sec)   p_kst 6.125000e-01   p_cons 9.967000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RANBP10.3_1919_10000_0.6125_0.9967_1.png
                gene_name: RANBP10
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
RAP1GAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.555722e-02	ci left: 6.926251e-01	ci right 7.106573e-01	k: 7017	n:10000
Cons ci ratio: 4.635127e-02	ci left: 4.072119e-01	ci right 4.266366e-01	k: 4169	n:10000
KS ci ratio: 3.695388e-02	ci left: 5.195598e-01	ci right 5.392231e-01	k: 5294	n:10000
RAP1GAP   10000 perm   2 sec   (5619 perm/sec)   p_kst 5.294000e-01   p_cons 4.169000e-01   p_joint 7.017000e-01

Outputting figure to mutsig2_images.part000000000143/RAP1GAP.3_2362_10000_0.5294_0.4169_0.7017.png
                gene_name: RAP1GAP
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 75 percent done.
RAP1GDS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.031013e-02	ci left: 1.846161e-01	ci right 2.001635e-01	k: 1923	n:10000
Cons ci ratio: 4.991301e-02	ci left: 3.718655e-01	ci right 3.910036e-01	k: 3814	n:10000
KS ci ratio: 1.438733e-01	ci left: 6.410846e-02	ci right 7.414431e-02	k: 690	n:10000
RAP1GDS1   10000 perm   2 sec   (6067 perm/sec)   p_kst 6.900000e-02   p_cons 3.814000e-01   p_joint 1.923000e-01

Joint ci ratio: 7.920726e-02	ci left: 1.047622e-01	ci right 1.134519e-01	k: 2181	n:20000
Cons ci ratio: 3.537977e-02	ci left: 3.735648e-01	ci right 3.870700e-01	k: 7606	n:20000
KS ci ratio: 9.917709e-02	ci left: 6.884579e-02	ci right 7.607910e-02	k: 1448	n:20000
RAP1GDS1   20000 perm   4 sec   (5404 perm/sec)   p_kst 7.240000e-02   p_cons 3.803000e-01   p_joint 1.090500e-01

Outputting figure to mutsig2_images.part000000000143/RAP1GDS1.3_1887_20000_0.0724_0.3803_0.10905.png
                gene_name: RAP1GDS1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 77 percent done.
RAPGEF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.180359e-02	ci left: 5.933315e-01	ci right 6.126085e-01	k: 6030	n:10000
Cons ci ratio: 1.089973e-02	ci left: 9.230676e-01	ci right 9.332812e-01	k: 9283	n:10000
KS ci ratio: 4.933629e-02	ci left: 3.773383e-01	ci right 3.965276e-01	k: 3869	n:10000
RAPGEF5   10000 perm   2 sec   (5731 perm/sec)   p_kst 3.869000e-01   p_cons 9.283000e-01   p_joint 6.030000e-01

Outputting figure to mutsig2_images.part000000000143/RAPGEF5.3_2285_10000_0.3869_0.9283_0.603.png
                gene_name: RAPGEF5
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 79 percent done.
RACGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.554170e-02	ci left: 8.573295e-01	ci right 8.708576e-01	k: 8642	n:10000
Cons ci ratio: 1.971088e-02	ci left: 7.901975e-01	ci right 8.060285e-01	k: 7982	n:10000
KS ci ratio: 3.364216e-02	ci left: 5.660425e-01	ci right 5.855133e-01	k: 5758	n:10000
RACGAP1   10000 perm   2 sec   (6178 perm/sec)   p_kst 5.758000e-01   p_cons 7.982000e-01   p_joint 8.642000e-01

Outputting figure to mutsig2_images.part000000000143/RACGAP1.2_1963_10000_0.5758_0.7982_0.8642.png
                gene_name: RACGAP1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 81 percent done.
RAD51C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.610965e-02	ci left: 5.310723e-01	ci right 5.507039e-01	k: 5409	n:10000
Cons ci ratio: 4.637034e-02	ci left: 4.070126e-01	ci right 4.264360e-01	k: 4167	n:10000
KS ci ratio: 1.519441e-01	ci left: 5.764078e-02	ci right 6.721608e-02	k: 623	n:10000
RAD51C   10000 perm   2 sec   (6645 perm/sec)   p_kst 6.230000e-02   p_cons 4.167000e-01   p_joint 5.409000e-01

Joint ci ratio: 5.197982e-02	ci left: 2.156122e-01	ci right 2.271689e-01	k: 4427	n:20000
Cons ci ratio: 3.320673e-02	ci left: 4.037706e-01	ci right 4.174554e-01	k: 8212	n:20000
KS ci ratio: 1.071685e-01	ci left: 5.933027e-02	ci right 6.609755e-02	k: 1253	n:20000
RAD51C   20000 perm   3 sec   (5860 perm/sec)   p_kst 6.265000e-02   p_cons 4.106000e-01   p_joint 2.213500e-01

Joint ci ratio: 4.249491e-02	ci left: 2.162492e-01	ci right 2.256716e-01	k: 6628	n:30000
Cons ci ratio: 2.700231e-02	ci left: 4.070212e-01	ci right 4.181957e-01	k: 12378	n:30000
KS ci ratio: 8.775248e-02	ci left: 5.962343e-02	ci right 6.512837e-02	k: 1870	n:30000
RAD51C   30000 perm   5 sec   (5525 perm/sec)   p_kst 6.233333e-02   p_cons 4.126000e-01   p_joint 2.209333e-01

Outputting figure to mutsig2_images.part000000000143/RAD51C.2_1171_30000_0.062333_0.4126_0.22093.png
                gene_name: RAD51C
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.062 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.065 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 82 percent done.
RAET1E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.327738e-02	ci left: 4.408137e-01	ci right 4.604151e-01	k: 4506	n:10000
KS ci ratio: 4.769225e-02	ci left: 3.934654e-01	ci right 4.127911e-01	k: 4031	n:10000
RAET1E   10000 perm   1 sec   (6885 perm/sec)   p_kst 4.031000e-01   p_cons 4.506000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RAET1E.2_808_10000_0.4031_0.4506_1.png
                gene_name: RAET1E
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
RALB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.868751e-02	ci left: 3.836086e-01	ci right 4.028536e-01	k: 3932	n:10000
KS ci ratio: 2.921266e-02	ci left: 6.334184e-01	ci right 6.522983e-01	k: 6429	n:10000
RALB   10000 perm   1 sec   (6889 perm/sec)   p_kst 6.429000e-01   p_cons 3.932000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RALB.2_637_10000_0.6429_0.3932_1.png
                gene_name: RALB
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
RAN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.127937e-02	ci left: 4.642721e-01	ci right 4.839430e-01	k: 4741	n:10000
KS ci ratio: 2.661160e-02	ci left: 6.752890e-01	ci right 6.936034e-01	k: 6845	n:10000
RAN   10000 perm   1 sec   (6934 perm/sec)   p_kst 6.845000e-01   p_cons 4.741000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RAN.2_675_10000_0.6845_0.4741_1.png
                gene_name: RAN
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
RANBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.367889e-02	ci left: 8.852399e-01	ci right 8.975311e-01	k: 8915	n:10000
Cons ci ratio: 9.838216e-02	ci left: 1.302192e-01	ci right 1.437930e-01	k: 1369	n:10000
KS ci ratio: 2.551451e-02	ci left: 6.933310e-01	ci right 7.113510e-01	k: 7024	n:10000
RANBP3   10000 perm   2 sec   (6289 perm/sec)   p_kst 7.024000e-01   p_cons 1.369000e-01   p_joint 8.915000e-01

Outputting figure to mutsig2_images.part000000000143/RANBP3.2_1772_10000_0.7024_0.1369_0.8915.png
                gene_name: RANBP3
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 89 percent done.
RAP1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.231157e-02	ci left: 4.519911e-01	ci right 4.716311e-01	k: 4618	n:10000
KS ci ratio: 3.384225e-02	ci left: 5.631348e-01	ci right 5.826227e-01	k: 5729	n:10000
RAP1A   10000 perm   1 sec   (7009 perm/sec)   p_kst 5.729000e-01   p_cons 4.618000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RAP1A.2_579_10000_0.5729_0.4618_1.png
                gene_name: RAP1A
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
RAP1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.897772e-02	ci left: 6.371392e-01	ci right 6.559753e-01	k: 6466	n:10000
Cons ci ratio: 4.661919e-02	ci left: 4.044221e-01	ci right 4.238280e-01	k: 4141	n:10000
KS ci ratio: 6.000711e-02	ci left: 2.900365e-01	ci right 3.080807e-01	k: 2990	n:10000
RAP1B   10000 perm   1 sec   (6883 perm/sec)   p_kst 2.990000e-01   p_cons 4.141000e-01   p_joint 6.466000e-01

Outputting figure to mutsig2_images.part000000000143/RAP1B.2_579_10000_0.299_0.4141_0.6466.png
                gene_name: RAP1B
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 93 percent done.
RAP1GAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.434124e-02	ci left: 2.619103e-01	ci right 2.794235e-01	k: 2706	n:10000
Cons ci ratio: 3.492635e-02	ci left: 5.475994e-01	ci right 5.671671e-01	k: 5574	n:10000
KS ci ratio: 9.817468e-02	ci left: 1.307088e-01	ci right 1.443032e-01	k: 1374	n:10000
RAP1GAP2   10000 perm   2 sec   (5944 perm/sec)   p_kst 1.374000e-01   p_cons 5.574000e-01   p_joint 2.706000e-01

Outputting figure to mutsig2_images.part000000000143/RAP1GAP2.2_2289_10000_0.1374_0.5574_0.2706.png
                gene_name: RAP1GAP2
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 95 percent done.
RAPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.601820e-01	ci left: 5.195823e-02	ci right 6.110226e-02	k: 564	n:10000
Cons ci ratio: 5.821045e-02	ci left: 3.028259e-01	ci right 3.210837e-01	k: 3119	n:10000
KS ci ratio: 2.260160e-01	ci left: 2.589329e-02	ci right 3.258470e-02	k: 291	n:10000
RAPH1   10000 perm   2 sec   (5371 perm/sec)   p_kst 2.910000e-02   p_cons 3.119000e-01   p_joint 5.640000e-02

Joint ci ratio: 1.414078e-01	ci left: 3.437815e-02	ci right 3.965756e-02	k: 739	n:20000
Cons ci ratio: 4.055072e-02	ci left: 3.119455e-01	ci right 3.249074e-01	k: 6368	n:20000
KS ci ratio: 1.569380e-01	ci left: 2.787170e-02	ci right 3.266616e-02	k: 604	n:20000
RAPH1   20000 perm   4 sec   (4792 perm/sec)   p_kst 3.020000e-02   p_cons 3.184000e-01   p_joint 3.695000e-02

Joint ci ratio: 6.897352e-02	ci left: 9.383754e-02	ci right 1.005740e-01	k: 2915	n:30000
Cons ci ratio: 3.396878e-02	ci left: 3.021809e-01	ci right 3.126565e-01	k: 9222	n:30000
KS ci ratio: 1.262519e-01	ci left: 2.916455e-02	ci right 3.312694e-02	k: 933	n:30000
RAPH1   30000 perm   7 sec   (4575 perm/sec)   p_kst 3.110000e-02   p_cons 3.074000e-01   p_joint 9.716667e-02

Joint ci ratio: 6.065313e-02	ci left: 9.167499e-02	ci right 9.743402e-02	k: 3781	n:40000
Cons ci ratio: 2.949979e-02	ci left: 3.017097e-01	ci right 3.107684e-01	k: 12249	n:40000
KS ci ratio: 1.101313e-01	ci left: 2.900680e-02	ci right 3.241178e-02	k: 1227	n:40000
RAPH1   40000 perm   9 sec   (4426 perm/sec)   p_kst 3.067500e-02   p_cons 3.062250e-01   p_joint 9.452500e-02

Joint ci ratio: 6.402633e-02	ci left: 6.750275e-02	ci right 7.198736e-02	k: 3486	n:50000
Cons ci ratio: 2.646948e-02	ci left: 3.008463e-01	ci right 3.089364e-01	k: 15244	n:50000
KS ci ratio: 9.833958e-02	ci left: 2.928335e-02	ci right 3.233145e-02	k: 1539	n:50000
RAPH1   50000 perm   12 sec   (4314 perm/sec)   p_kst 3.078000e-02   p_cons 3.048800e-01   p_joint 6.972000e-02

Outputting figure to mutsig2_images.part000000000143/RAPH1.2_3976_50000_0.03078_0.30488_0.06972.png
                gene_name: RAPH1
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.072 

Current progress: 96 percent done.
RAPSN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.009287e-02	ci left: 9.329910e-01	ci right 9.425521e-01	k: 9379	n:10000
KS ci ratio: 1.381978e-02	ci left: 8.831915e-01	ci right 8.955806e-01	k: 8895	n:10000
RAPSN   10000 perm   2 sec   (5938 perm/sec)   p_kst 8.895000e-01   p_cons 9.379000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RAPSN.2_1271_10000_0.8895_0.9379_1.png
                gene_name: RAPSN
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
RARRES1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.354312e-02	ci left: 7.261314e-01	ci right 7.435316e-01	k: 7349	n:10000
KS ci ratio: 1.447174e-02	ci left: 8.735722e-01	ci right 8.864055e-01	k: 8801	n:10000
RARRES1   10000 perm   1 sec   (6918 perm/sec)   p_kst 8.801000e-01   p_cons 7.349000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000143/RARRES1.2_924_10000_0.8801_0.7349_1.png
                gene_name: RARRES1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000143
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 143 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1706>
Subject: Job 9894106: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1706>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000144> was used as the working directory.
Started at Sat Oct  6 00:26:56 2012
Results reported at Sat Oct  6 00:41:27 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000144.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000144.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 144  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000144.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    908.47 sec.
    Max Memory :      3549 MB
    Max Swap   :      5895 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
144
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 144
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 144: processing genes 12892 - 12982
Calculating significance of each gene.
Using projection method.
12892	RARS2	2.905749e-01
In gene RASA1 the following bins exceed PROBCAP:
    READ-AG-3574	categ 6	N = 3207    n = 1	mu =   1.03e-07
12893	RASA1	2.399278e-01
12894	RASA2	7.166998e-01
12895	RASA3	2.208168e-01
12896	RASAL1	9.434593e-01
12897	RASAL2	2.355550e-01
12898	RASAL3	9.878817e-01
12899	RASD1	1
12900	RASD2	7.763722e-01
12901	RASEF	6.730033e-01
12902	RASGEF1A	7.673466e-01
12903	RASGEF1B	2.658988e-01
12904	RASGEF1C	6.268445e-01
12905	RASGRF1	9.910520e-02
12906	RASGRF2	5.702860e-01
12907	RASGRP1	1.882670e-01
12908	RASGRP2	3.280242e-01
12909	RASGRP3	1.267814e-01
12910	RASGRP4	9.338727e-01
12911	RASIP1	2.750077e-01
12912	RASL10B	1
12913	RASL11A	2.418763e-01
12914	RASL11B	1
12915	RASL12	1
12916	RASSF1	1
12917	RASSF10	1
12918	RASSF2	5.884636e-02
12919	RASSF3	1
12920	RASSF4	1.415902e-01
12921	RASSF5	2.155524e-01
12922	RASSF6	3.475512e-01
12923	RASSF7	1
12924	RASSF8	1.979803e-02
12925	RASSF9	8.931824e-02
12926	RAVER1	9.786758e-01
12927	RAVER2	4.556995e-01
12928	RAX	6.430225e-01
12929	RAX2	4.042890e-01
12930	RB1	2.793731e-01
12931	RB1CC1	6.193766e-01
12932	RBAK	4.710358e-01
12933	RBBP4	1
12934	RBBP5	7.775416e-01
12935	RBBP6	9.388731e-01
12936	RBBP7	3.600358e-02
12937	RBBP8	9.036570e-01
12938	RBBP9	1
12939	RBCK1	7.806746e-01
12940	RBKS	1
12941	RBL1	6.258549e-01
12942	RBL2	4.522052e-02
12943	RBM10	1.012254e-02
12944	RBM11	1
12945	RBM12	6.547189e-01
12946	RBM12B	3.987209e-01
12947	RBM14	9.958053e-01
12948	RBM15	6.939820e-01
12949	RBM15B	7.312849e-01
12950	RBM16	8.068004e-01
12951	RBM17	5.474427e-01
12952	RBM18	1
12953	RBM19	5.892136e-01
12954	RBM22	1.686187e-01
12955	RBM23	1
12956	RBM24	3.147842e-01
12957	RBM25	5.018387e-01
12958	RBM26	1.590056e-01
12959	RBM27	5.852497e-01
12960	RBM28	9.511917e-01
12961	RBM3	2.552483e-01
12962	RBM33	7.065554e-01
12963	RBM34	8.430081e-01
12964	RBM38	6.397709e-01
12965	RBM39	1.866981e-01
12966	RBM4	5.052306e-01
12967	RBM41	3.829675e-01
12968	RBM42	9.675416e-02
12969	RBM43	7.709727e-02
12970	RBM44	2.739231e-01
12971	RBM45	7.051309e-02
12972	RBM46	1.532123e-01
12973	RBM47	9.804549e-01
12974	RBM4B	4.105141e-01
12975	RBM5	7.492153e-01
12976	RBM6	7.915527e-01
12977	RBM7	2.623853e-01
12978	RBM8A	5.916189e-01
12979	RBM9	5.979599e-01
12980	RBMS1	7.986849e-01
12981	RBMS2	8.129780e-01
12982	RBMS3	3.279504e-03
Done

Running MutSig 2:
Scatter job 144: processing genes 12892 - 12982
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RASGRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.532550e-02	ci left: 6.964572e-01	ci right 7.144230e-01	k: 7055	n:10000
KS ci ratio: 1.011016e-02	ci left: 9.327839e-01	ci right 9.423592e-01	k: 9377	n:10000
RASGRF1   10000 perm   2 sec   (4703 perm/sec)   p_kst 9.377000e-01   p_cons 7.055000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RASGRF1.12_3934_10000_0.9377_0.7055_1.png
                gene_name: RASGRF1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
RBM44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.377574e-02	ci left: 2.653742e-01	ci right 2.829575e-01	k: 2741	n:10000
Cons ci ratio: 5.780619e-02	ci left: 3.058014e-01	ci right 3.241065e-01	k: 3149	n:10000
KS ci ratio: 8.902215e-02	ci left: 1.551222e-01	ci right 1.696750e-01	k: 1623	n:10000
RBM44   10000 perm   2 sec   (4582 perm/sec)   p_kst 1.623000e-01   p_cons 3.149000e-01   p_joint 2.741000e-01

Outputting figure to mutsig2_images.part000000000144/RBM44.11_3215_10000_0.1623_0.3149_0.2741.png
                gene_name: RBM44
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 3 percent done.
RASA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.748396e-02	ci left: 8.266621e-01	ci right 8.413428e-01	k: 8341	n:10000
Cons ci ratio: 3.561095e-02	ci left: 5.379823e-01	ci right 5.575898e-01	k: 5478	n:10000
KS ci ratio: 1.779247e-02	ci left: 8.216784e-01	ci right 8.365294e-01	k: 8292	n:10000
RASA1   10000 perm   2 sec   (4467 perm/sec)   p_kst 8.292000e-01   p_cons 5.478000e-01   p_joint 8.341000e-01

Outputting figure to mutsig2_images.part000000000144/RASA1.9_3256_10000_0.8292_0.5478_0.8341.png
                gene_name: RASA1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 5 percent done.
RASGRF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.505688e-02	ci left: 3.270391e-01	ci right 3.456564e-01	k: 3363	n:10000
Cons ci ratio: 1.095497e-01	ci left: 1.072486e-01	ci right 1.197776e-01	k: 1134	n:10000
KS ci ratio: 4.127937e-02	ci left: 4.642721e-01	ci right 4.839430e-01	k: 4741	n:10000
RASGRF2   10000 perm   2 sec   (4479 perm/sec)   p_kst 4.741000e-01   p_cons 1.134000e-01   p_joint 3.363000e-01

Joint ci ratio: 4.603245e-02	ci left: 2.599352e-01	ci right 2.722329e-01	k: 5321	n:20000
Cons ci ratio: 8.003307e-02	ci left: 1.027974e-01	ci right 1.114172e-01	k: 2141	n:20000
KS ci ratio: 2.846376e-02	ci left: 4.797503e-01	ci right 4.936536e-01	k: 9734	n:20000
RASGRF2   20000 perm   5 sec   (4091 perm/sec)   p_kst 4.867000e-01   p_cons 1.070500e-01   p_joint 2.660500e-01

Outputting figure to mutsig2_images.part000000000144/RASGRF2.9_3822_20000_0.4867_0.10705_0.26605.png
                gene_name: RASGRF2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 6 percent done.
RBM10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.912367e-02	ci left: 6.348262e-01	ci right 6.536897e-01	k: 6443	n:10000
KS ci ratio: 2.767080e-02	ci left: 6.580680e-01	ci right 6.766344e-01	k: 6674	n:10000
RBM10   10000 perm   2 sec   (4749 perm/sec)   p_kst 6.674000e-01   p_cons 6.443000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RBM10.9_2885_10000_0.6674_0.6443_1.png
                gene_name: RBM10
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
RBL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.905383e-02	ci left: 6.359324e-01	ci right 6.547828e-01	k: 6454	n:10000
Cons ci ratio: 1.436877e-02	ci left: 8.751064e-01	ci right 8.878705e-01	k: 8816	n:10000
KS ci ratio: 4.754394e-02	ci left: 3.949592e-01	ci right 4.142964e-01	k: 4046	n:10000
RBL2   10000 perm   2 sec   (4412 perm/sec)   p_kst 4.046000e-01   p_cons 8.816000e-01   p_joint 6.454000e-01

Outputting figure to mutsig2_images.part000000000144/RBL2.8_3508_10000_0.4046_0.8816_0.6454.png
                gene_name: RBL2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 10 percent done.
RBM12B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.626559e-02	ci left: 4.081086e-01	ci right 4.275393e-01	k: 4178	n:10000
Cons ci ratio: 1.028186e-01	ci left: 1.203376e-01	ci right 1.334806e-01	k: 1268	n:10000
KS ci ratio: 2.033904e-02	ci left: 7.797545e-01	ci right 7.958775e-01	k: 7879	n:10000
RBM12B   10000 perm   2 sec   (4725 perm/sec)   p_kst 7.879000e-01   p_cons 1.268000e-01   p_joint 4.178000e-01

Joint ci ratio: 3.634859e-02	ci left: 3.609623e-01	ci right 3.743762e-01	k: 7353	n:20000
Cons ci ratio: 7.321807e-02	ci left: 1.207415e-01	ci right 1.299677e-01	k: 2506	n:20000
KS ci ratio: 1.443763e-02	ci left: 7.808554e-01	ci right 7.922612e-01	k: 15732	n:20000
RBM12B   20000 perm   5 sec   (4319 perm/sec)   p_kst 7.866000e-01   p_cons 1.253000e-01   p_joint 3.676500e-01

Outputting figure to mutsig2_images.part000000000144/RBM12B.8_3010_20000_0.7866_0.1253_0.36765.png
                gene_name: RBM12B
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 11 percent done.
RBM16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.770386e-02	ci left: 1.591483e-01	ci right 1.738466e-01	k: 1664	n:10000
Cons ci ratio: 2.682907e-01	ci left: 1.809309e-02	ci right 2.379077e-02	k: 208	n:10000
KS ci ratio: 1.320071e-02	ci left: 8.921069e-01	ci right 9.040601e-01	k: 8982	n:10000
RBM16   10000 perm   2 sec   (4861 perm/sec)   p_kst 8.982000e-01   p_cons 2.080000e-02   p_joint 1.664000e-01

Joint ci ratio: 1.024948e-01	ci left: 6.464664e-02	ci right 7.167954e-02	k: 1362	n:20000
Cons ci ratio: 2.061923e-01	ci left: 1.591794e-02	ci right 1.962416e-02	k: 354	n:20000
KS ci ratio: 9.601101e-03	ci left: 8.885320e-01	ci right 8.971534e-01	k: 17858	n:20000
RBM16   20000 perm   5 sec   (4435 perm/sec)   p_kst 8.929000e-01   p_cons 1.770000e-02   p_joint 6.810000e-02

Joint ci ratio: 6.471726e-02	ci left: 1.054291e-01	ci right 1.125135e-01	k: 3268	n:30000
Cons ci ratio: 1.717537e-01	ci left: 1.559936e-02	ci right 1.856189e-02	k: 511	n:30000
KS ci ratio: 6.659666e-03	ci left: 9.172117e-01	ci right 9.233733e-01	k: 27610	n:30000
RBM16   30000 perm   7 sec   (4275 perm/sec)   p_kst 9.203333e-01   p_cons 1.703333e-02   p_joint 1.089333e-01

Joint ci ratio: 6.490257e-02	ci left: 8.085607e-02	ci right 8.630456e-02	k: 3342	n:40000
Cons ci ratio: 1.471795e-01	ci left: 1.614124e-02	ci right 1.872950e-02	k: 696	n:40000
KS ci ratio: 6.034709e-03	ci left: 9.106266e-01	ci right 9.161632e-01	k: 36537	n:40000
RBM16   40000 perm   10 sec   (4167 perm/sec)   p_kst 9.134250e-01   p_cons 1.740000e-02   p_joint 8.355000e-02

Joint ci ratio: 5.852386e-02	ci left: 7.992516e-02	ci right 8.476346e-02	k: 4116	n:50000
Cons ci ratio: 1.330672e-01	ci left: 1.592371e-02	ci right 1.821286e-02	k: 852	n:50000
KS ci ratio: 5.386753e-03	ci left: 9.112451e-01	ci right 9.161867e-01	k: 45687	n:50000
RBM16   50000 perm   12 sec   (4082 perm/sec)   p_kst 9.137400e-01   p_cons 1.704000e-02   p_joint 8.232000e-02

Joint ci ratio: 4.618356e-02	ci left: 1.047188e-01	ci right 1.096859e-01	k: 6431	n:60000
Cons ci ratio: 1.144297e-01	ci left: 1.808454e-02	ci right 2.029564e-02	k: 1150	n:60000
KS ci ratio: 4.889435e-03	ci left: 9.123691e-01	ci right 9.168574e-01	k: 54878	n:60000
RBM16   60000 perm   15 sec   (4000 perm/sec)   p_kst 9.146333e-01   p_cons 1.916667e-02   p_joint 1.071833e-01

Joint ci ratio: 4.097792e-02	ci left: 1.132402e-01	ci right 1.179917e-01	k: 8092	n:70000
Cons ci ratio: 1.058946e-01	ci left: 1.818233e-02	ci right 2.022922e-02	k: 1343	n:70000
KS ci ratio: 4.528904e-03	ci left: 9.124620e-01	ci right 9.166179e-01	k: 64019	n:70000
RBM16   70000 perm   18 sec   (3930 perm/sec)   p_kst 9.145571e-01   p_cons 1.918571e-02   p_joint 1.156000e-01

Joint ci ratio: 3.856783e-02	ci left: 1.121525e-01	ci right 1.165755e-01	k: 9148	n:80000
Cons ci ratio: 9.975289e-02	ci left: 1.799201e-02	ci right 1.989311e-02	k: 1514	n:80000
KS ci ratio: 4.235211e-03	ci left: 9.126420e-01	ci right 9.165278e-01	k: 73168	n:80000
RBM16   80000 perm   21 sec   (3865 perm/sec)   p_kst 9.146000e-01   p_cons 1.892500e-02   p_joint 1.143500e-01

Outputting figure to mutsig2_images.part000000000144/RBM16.8_3896_80000_0.9146_0.018925_0.11435.png
                gene_name: RBM16
               theta_stop: 0.100 
                    nperm: 80000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 13 percent done.
RBM19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.358403e-02	ci left: 2.665620e-01	ci right 2.841691e-01	k: 2753	n:10000
Cons ci ratio: 4.596265e-02	ci left: 4.112975e-01	ci right 4.307486e-01	k: 4210	n:10000
KS ci ratio: 8.077830e-02	ci left: 1.828443e-01	ci right 1.983364e-01	k: 1905	n:10000
RBM19   10000 perm   2 sec   (5159 perm/sec)   p_kst 1.905000e-01   p_cons 4.210000e-01   p_joint 2.753000e-01

Outputting figure to mutsig2_images.part000000000144/RBM19.8_2979_10000_0.1905_0.421_0.2753.png
                gene_name: RBM19
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 15 percent done.
RASA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.589935e-02	ci left: 5.339763e-01	ci right 5.535982e-01	k: 5438	n:10000
KS ci ratio: 4.556899e-02	ci left: 4.154834e-01	ci right 4.349602e-01	k: 4252	n:10000
RASA3   10000 perm   2 sec   (5304 perm/sec)   p_kst 4.252000e-01   p_cons 5.438000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RASA3.7_2601_10000_0.4252_0.5438_1.png
                gene_name: RASA3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
RASAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.683071e-01	ci left: 9.139894e-03	ci right 1.335208e-02	k: 111	n:10000
Cons ci ratio: 2.131928e-01	ci left: 2.920604e-02	ci right 3.626959e-02	k: 326	n:10000
KS ci ratio: 1.738085e-01	ci left: 4.417993e-02	ci right 5.268561e-02	k: 483	n:10000
RASAL2   10000 perm   2 sec   (4824 perm/sec)   p_kst 4.830000e-02   p_cons 3.260000e-02   p_joint 1.110000e-02

Joint ci ratio: 2.073850e-01	ci left: 1.572813e-02	ci right 1.941403e-02	k: 350	n:20000
Cons ci ratio: 1.523258e-01	ci left: 2.960404e-02	ci right 3.453324e-02	k: 640	n:20000
KS ci ratio: 1.243277e-01	ci left: 4.439900e-02	ci right 5.033349e-02	k: 946	n:20000
RASAL2   20000 perm   5 sec   (4393 perm/sec)   p_kst 4.730000e-02   p_cons 3.200000e-02   p_joint 1.750000e-02

Joint ci ratio: 1.568295e-01	ci left: 1.879820e-02	ci right 2.202895e-02	k: 611	n:30000
Cons ci ratio: 1.230259e-01	ci left: 3.071616e-02	ci right 3.477499e-02	k: 981	n:30000
KS ci ratio: 1.012337e-01	ci left: 4.518536e-02	ci right 5.003607e-02	k: 1427	n:30000
RASAL2   30000 perm   7 sec   (4247 perm/sec)   p_kst 4.756667e-02   p_cons 3.270000e-02   p_joint 2.036667e-02

Joint ci ratio: 1.588266e-01	ci left: 1.380760e-02	ci right 1.621357e-02	k: 599	n:40000
Cons ci ratio: 1.096715e-01	ci left: 2.925013e-02	ci right 3.266841e-02	k: 1237	n:40000
KS ci ratio: 8.759885e-02	ci left: 4.558280e-02	ci right 4.978318e-02	k: 1906	n:40000
RASAL2   40000 perm   10 sec   (4133 perm/sec)   p_kst 4.765000e-02   p_cons 3.092500e-02   p_joint 1.497500e-02

Joint ci ratio: 1.204596e-01	ci left: 1.948932e-02	ci right 2.200675e-02	k: 1036	n:50000
Cons ci ratio: 9.522592e-02	ci left: 3.121690e-02	ci right 3.435765e-02	k: 1638	n:50000
KS ci ratio: 7.709833e-02	ci left: 4.726153e-02	ci right 5.107103e-02	k: 2457	n:50000
RASAL2   50000 perm   12 sec   (4033 perm/sec)   p_kst 4.914000e-02   p_cons 3.276000e-02   p_joint 2.072000e-02

Joint ci ratio: 9.388732e-02	ci left: 2.690621e-02	ci right 2.957302e-02	k: 1693	n:60000
Cons ci ratio: 8.761773e-02	ci left: 3.086706e-02	ci right 3.371174e-02	k: 1936	n:60000
KS ci ratio: 7.074237e-02	ci left: 4.695851e-02	ci right 5.041865e-02	k: 2920	n:60000
RASAL2   60000 perm   15 sec   (3949 perm/sec)   p_kst 4.866667e-02   p_cons 3.226667e-02   p_joint 2.821667e-02

Outputting figure to mutsig2_images.part000000000144/RASAL2.7_3953_60000_0.048667_0.032267_0.028217.png
                gene_name: RASAL2
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.030 

Current progress: 18 percent done.
RASGRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.957213e-02	ci left: 4.853532e-01	ci right 5.050496e-01	k: 4952	n:10000
Cons ci ratio: 2.430514e-02	ci left: 7.134081e-01	ci right 7.310622e-01	k: 7223	n:10000
KS ci ratio: 5.455513e-02	ci left: 3.311104e-01	ci right 3.497826e-01	k: 3404	n:10000
RASGRP2   10000 perm   2 sec   (5260 perm/sec)   p_kst 3.404000e-01   p_cons 7.223000e-01   p_joint 4.952000e-01

Outputting figure to mutsig2_images.part000000000144/RASGRP2.7_1890_10000_0.3404_0.7223_0.4952.png
                gene_name: RASGRP2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 19 percent done.
RASGRP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.200987e-02	ci left: 5.902198e-01	ci right 6.095220e-01	k: 5999	n:10000
Cons ci ratio: 1.883211e-02	ci left: 8.047094e-01	ci right 8.201081e-01	k: 8125	n:10000
KS ci ratio: 4.318138e-02	ci left: 4.419113e-01	ci right 4.615169e-01	k: 4517	n:10000
RASGRP3   10000 perm   2 sec   (5815 perm/sec)   p_kst 4.517000e-01   p_cons 8.125000e-01   p_joint 5.999000e-01

Outputting figure to mutsig2_images.part000000000144/RASGRP3.7_2137_10000_0.4517_0.8125_0.5999.png
                gene_name: RASGRP3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 21 percent done.
RB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.662392e-02	ci left: 6.750875e-01	ci right 6.934051e-01	k: 6843	n:10000
Cons ci ratio: 2.313860e-02	ci left: 7.329006e-01	ci right 7.501585e-01	k: 7416	n:10000
KS ci ratio: 3.812710e-02	ci left: 5.039511e-01	ci right 5.236409e-01	k: 5138	n:10000
RB1   10000 perm   2 sec   (5058 perm/sec)   p_kst 5.138000e-01   p_cons 7.416000e-01   p_joint 6.843000e-01

Outputting figure to mutsig2_images.part000000000144/RB1.7_2895_10000_0.5138_0.7416_0.6843.png
                gene_name: RB1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 23 percent done.
RBBP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.375648e-02	ci left: 8.841132e-01	ci right 8.964584e-01	k: 8904	n:10000
Cons ci ratio: 2.714896e-02	ci left: 6.665257e-01	ci right 6.849718e-01	k: 6758	n:10000
KS ci ratio: 3.443362e-02	ci left: 5.546142e-01	ci right 5.741482e-01	k: 5644	n:10000
RBBP6   10000 perm   2 sec   (4476 perm/sec)   p_kst 5.644000e-01   p_cons 6.758000e-01   p_joint 8.904000e-01

Outputting figure to mutsig2_images.part000000000144/RBBP6.7_5505_10000_0.5644_0.6758_0.8904.png
                gene_name: RBBP6
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 24 percent done.
RBBP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.104141e-02	ci left: 2.250393e-01	ci right 2.417163e-01	k: 2333	n:10000
Cons ci ratio: 9.048988e-02	ci left: 1.508034e-01	ci right 1.651964e-01	k: 1579	n:10000
KS ci ratio: 7.120058e-02	ci left: 2.242494e-01	ci right 2.409066e-01	k: 2325	n:10000
RBBP7   10000 perm   1 sec   (6735 perm/sec)   p_kst 2.325000e-01   p_cons 1.579000e-01   p_joint 2.333000e-01

Outputting figure to mutsig2_images.part000000000144/RBBP7.7_1326_10000_0.2325_0.1579_0.2333.png
                gene_name: RBBP7
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 26 percent done.
RBM46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.021285e-01	ci left: 1.218044e-01	ci right 1.350129e-01	k: 1283	n:10000
Cons ci ratio: 9.450053e-02	ci left: 1.398191e-01	ci right 1.537873e-01	k: 1467	n:10000
KS ci ratio: 1.117267e-01	ci left: 1.034441e-01	ci right 1.157844e-01	k: 1095	n:10000
RBM46   10000 perm   2 sec   (5248 perm/sec)   p_kst 1.095000e-01   p_cons 1.467000e-01   p_joint 1.283000e-01

Joint ci ratio: 6.121368e-02	ci left: 1.649161e-01	ci right 1.753800e-01	k: 3402	n:20000
Cons ci ratio: 6.650479e-02	ci left: 1.430558e-01	ci right 1.529468e-01	k: 2959	n:20000
KS ci ratio: 7.838310e-02	ci left: 1.067765e-01	ci right 1.155369e-01	k: 2222	n:20000
RBM46   20000 perm   4 sec   (4752 perm/sec)   p_kst 1.111000e-01   p_cons 1.479500e-01   p_joint 1.701000e-01

Outputting figure to mutsig2_images.part000000000144/RBM46.7_1618_20000_0.1111_0.14795_0.1701.png
                gene_name: RBM46
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 27 percent done.
RB1CC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.188344e-02	ci left: 7.539324e-01	ci right 7.707145e-01	k: 7624	n:10000
Cons ci ratio: 5.218770e-02	ci left: 3.511805e-01	ci right 3.701008e-01	k: 3606	n:10000
KS ci ratio: 1.635946e-02	ci left: 8.445820e-01	ci right 8.586125e-01	k: 8517	n:10000
RB1CC1   10000 perm   2 sec   (4412 perm/sec)   p_kst 8.517000e-01   p_cons 3.606000e-01   p_joint 7.624000e-01

Outputting figure to mutsig2_images.part000000000144/RB1CC1.6_4873_10000_0.8517_0.3606_0.7624.png
                gene_name: RB1CC1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 29 percent done.
RBM15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.823153e-02	ci left: 3.880884e-01	ci right 4.073712e-01	k: 3977	n:10000
Cons ci ratio: 1.026797e-01	ci left: 1.206309e-01	ci right 1.337871e-01	k: 1271	n:10000
KS ci ratio: 3.748370e-02	ci left: 5.124546e-01	ci right 5.321324e-01	k: 5223	n:10000
RBM15   10000 perm   2 sec   (4950 perm/sec)   p_kst 5.223000e-01   p_cons 1.271000e-01   p_joint 3.977000e-01

Joint ci ratio: 3.961223e-02	ci left: 3.221404e-01	ci right 3.352095e-01	k: 6573	n:20000
Cons ci ratio: 7.416821e-02	ci left: 1.179862e-01	ci right 1.271238e-01	k: 2450	n:20000
KS ci ratio: 2.635322e-02	ci left: 5.182510e-01	ci right 5.321416e-01	k: 10504	n:20000
RBM15   20000 perm   5 sec   (4337 perm/sec)   p_kst 5.252000e-01   p_cons 1.225000e-01   p_joint 3.286500e-01

Outputting figure to mutsig2_images.part000000000144/RBM15.6_2942_20000_0.5252_0.1225_0.32865.png
                gene_name: RBM15
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 31 percent done.
RBM25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.355138e-02	ci left: 8.870840e-01	ci right 8.992859e-01	k: 8933	n:10000
KS ci ratio: 8.722590e-03	ci left: 9.485639e-01	ci right 9.569698e-01	k: 9529	n:10000
RBM25   10000 perm   2 sec   (5188 perm/sec)   p_kst 9.529000e-01   p_cons 8.933000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RBM25.6_2604_10000_0.9529_0.8933_1.png
                gene_name: RBM25
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
RBM26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.290783e-02	ci left: 1.750712e-01	ci right 1.903141e-01	k: 1826	n:10000
Cons ci ratio: 4.411732e-02	ci left: 4.313368e-01	ci right 4.508976e-01	k: 4411	n:10000
KS ci ratio: 1.045236e-01	ci left: 1.168187e-01	ci right 1.298017e-01	k: 1232	n:10000
RBM26   10000 perm   2 sec   (5029 perm/sec)   p_kst 1.232000e-01   p_cons 4.411000e-01   p_joint 1.826000e-01

Joint ci ratio: 5.663373e-02	ci left: 1.877482e-01	ci right 1.987411e-01	k: 3864	n:20000
Cons ci ratio: 3.139845e-02	ci left: 4.310585e-01	ci right 4.448596e-01	k: 8759	n:20000
KS ci ratio: 7.262314e-02	ci left: 1.225132e-01	ci right 1.317955e-01	k: 2542	n:20000
RBM26   20000 perm   4 sec   (4555 perm/sec)   p_kst 1.271000e-01   p_cons 4.379500e-01   p_joint 1.932000e-01

Outputting figure to mutsig2_images.part000000000144/RBM26.6_3027_20000_0.1271_0.43795_0.1932.png
                gene_name: RBM26
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 34 percent done.
RBM39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.166397e-02	ci left: 1.474675e-01	ci right 1.617343e-01	k: 1545	n:10000
Cons ci ratio: 9.025256e-02	ci left: 1.514904e-01	ci right 1.659090e-01	k: 1586	n:10000
KS ci ratio: 7.612086e-02	ci left: 2.015594e-01	ci right 2.176102e-01	k: 2095	n:10000
RBM39   10000 perm   2 sec   (5633 perm/sec)   p_kst 2.095000e-01   p_cons 1.586000e-01   p_joint 1.545000e-01

Outputting figure to mutsig2_images.part000000000144/RBM39.6_1657_10000_0.2095_0.1586_0.1545.png
                gene_name: RBM39
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 35 percent done.
RBM42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.561814e-02	ci left: 5.378822e-01	ci right 5.574900e-01	k: 5477	n:10000
Cons ci ratio: 7.190577e-02	ci left: 2.207943e-01	ci right 2.373638e-01	k: 2290	n:10000
KS ci ratio: 3.961172e-02	ci left: 4.848535e-01	ci right 5.045496e-01	k: 4947	n:10000
RBM42   10000 perm   2 sec   (5805 perm/sec)   p_kst 4.947000e-01   p_cons 2.290000e-01   p_joint 5.477000e-01

Outputting figure to mutsig2_images.part000000000144/RBM42.6_1483_10000_0.4947_0.229_0.5477.png
                gene_name: RBM42
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 37 percent done.
RBM45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.561906e-02	ci left: 2.037281e-01	ci right 2.198401e-01	k: 2117	n:10000
Cons ci ratio: 1.373633e-01	ci left: 7.010558e-02	ci right 8.054343e-02	k: 752	n:10000
KS ci ratio: 3.097309e-02	ci left: 6.059831e-01	ci right 6.251495e-01	k: 6156	n:10000
RBM45   10000 perm   2 sec   (5744 perm/sec)   p_kst 6.156000e-01   p_cons 7.520000e-02   p_joint 2.117000e-01

Joint ci ratio: 5.265229e-02	ci left: 2.112542e-01	ci right 2.227282e-01	k: 4339	n:20000
Cons ci ratio: 9.228307e-02	ci left: 7.891869e-02	ci right 8.660313e-02	k: 1654	n:20000
KS ci ratio: 2.235143e-02	ci left: 5.991378e-01	ci right 6.127313e-01	k: 12119	n:20000
RBM45   20000 perm   4 sec   (5145 perm/sec)   p_kst 6.059500e-01   p_cons 8.270000e-02   p_joint 2.169500e-01

Outputting figure to mutsig2_images.part000000000144/RBM45.6_1461_20000_0.60595_0.0827_0.21695.png
                gene_name: RBM45
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 39 percent done.
RBM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.635322e-02	ci left: 6.795209e-01	ci right 6.977691e-01	k: 6887	n:10000
Cons ci ratio: 5.368008e-02	ci left: 3.383613e-01	ci right 3.571274e-01	k: 3477	n:10000
KS ci ratio: 2.945480e-02	ci left: 6.295976e-01	ci right 6.485213e-01	k: 6391	n:10000
RBM6   10000 perm   2 sec   (5095 perm/sec)   p_kst 6.391000e-01   p_cons 3.477000e-01   p_joint 6.887000e-01

Outputting figure to mutsig2_images.part000000000144/RBM6.6_3452_10000_0.6391_0.3477_0.6887.png
                gene_name: RBM6
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 40 percent done.
RBMS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.371664e-01	ci left: 7.029921e-02	ci right 8.074967e-02	k: 754	n:10000
Cons ci ratio: 4.851453e-02	ci left: 3.853009e-01	ci right 4.045604e-01	k: 3949	n:10000
KS ci ratio: 2.305278e-01	ci left: 2.485465e-02	ci right 3.142409e-02	k: 280	n:10000
RBMS3   10000 perm   2 sec   (5751 perm/sec)   p_kst 2.800000e-02   p_cons 3.949000e-01   p_joint 7.540000e-02

Joint ci ratio: 1.094685e-01	ci left: 5.694265e-02	ci right 6.358591e-02	k: 1204	n:20000
Cons ci ratio: 3.328230e-02	ci left: 4.026735e-01	ci right 4.163528e-01	k: 8190	n:20000
KS ci ratio: 1.541997e-01	ci left: 2.888197e-02	ci right 3.375555e-02	k: 625	n:20000
RBMS3   20000 perm   4 sec   (5156 perm/sec)   p_kst 3.125000e-02   p_cons 4.095000e-01   p_joint 6.020000e-02

Joint ci ratio: 9.463309e-02	ci left: 5.153421e-02	ci right 5.668591e-02	k: 1622	n:30000
Cons ci ratio: 2.710096e-02	ci left: 4.052583e-01	ci right 4.164256e-01	k: 12325	n:30000
KS ci ratio: 1.277417e-01	ci left: 2.848615e-02	ci right 3.240548e-02	k: 912	n:30000
RBMS3   30000 perm   6 sec   (4927 perm/sec)   p_kst 3.040000e-02   p_cons 4.108333e-01   p_joint 5.406667e-02

Joint ci ratio: 8.151781e-02	ci left: 5.241792e-02	ci right 5.689701e-02	k: 2185	n:40000
Cons ci ratio: 2.357300e-02	ci left: 4.039017e-01	ci right 4.135616e-01	k: 16349	n:40000
KS ci ratio: 1.096258e-01	ci left: 2.927446e-02	ci right 3.269407e-02	k: 1238	n:40000
RBMS3   40000 perm   8 sec   (4775 perm/sec)   p_kst 3.095000e-02   p_cons 4.087250e-01   p_joint 5.462500e-02

Joint ci ratio: 8.296498e-02	ci left: 4.096404e-02	ci right 4.452929e-02	k: 2136	n:50000
Cons ci ratio: 2.113456e-02	ci left: 4.032684e-01	ci right 4.119024e-01	k: 20379	n:50000
KS ci ratio: 9.827376e-02	ci left: 2.932240e-02	ci right 3.237239e-02	k: 1541	n:50000
RBMS3   50000 perm   11 sec   (4655 perm/sec)   p_kst 3.082000e-02   p_cons 4.075800e-01   p_joint 4.272000e-02

Outputting figure to mutsig2_images.part000000000144/RBMS3.6_1421_50000_0.03082_0.40758_0.04272.png
                gene_name: RBMS3
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.045 

Current progress: 42 percent done.
RARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.571011e-01	ci left: 5.637697e-03	ci right 9.058734e-03	k: 72	n:10000
Cons ci ratio: 5.325685e-02	ci left: 3.419380e-01	ci right 3.607487e-01	k: 3513	n:10000
KS ci ratio: 7.677370e-01	ci left: 1.618501e-03	ci right 3.688296e-03	k: 25	n:10000
RARS2   10000 perm   2 sec   (5329 perm/sec)   p_kst 2.500000e-03   p_cons 3.513000e-01   p_joint 7.200000e-03

Joint ci ratio: 3.644804e-01	ci left: 4.704030e-03	ci right 6.843509e-03	k: 114	n:20000
Cons ci ratio: 3.679439e-02	ci left: 3.553351e-01	ci right 3.687050e-01	k: 7240	n:20000
KS ci ratio: 5.651098e-01	ci left: 1.727187e-03	ci right 3.123791e-03	k: 47	n:20000
RARS2   20000 perm   4 sec   (4858 perm/sec)   p_kst 2.350000e-03   p_cons 3.620000e-01   p_joint 5.700000e-03

Joint ci ratio: 3.471010e-01	ci left: 3.499882e-03	ci right 4.998632e-03	k: 126	n:30000
Cons ci ratio: 3.073653e-02	ci left: 3.461285e-01	ci right 3.569669e-01	k: 10546	n:30000
KS ci ratio: 4.582351e-01	ci left: 1.878312e-03	ci right 3.021462e-03	k: 72	n:30000
RARS2   30000 perm   6 sec   (4646 perm/sec)   p_kst 2.400000e-03   p_cons 3.515333e-01   p_joint 4.200000e-03

Joint ci ratio: 3.260741e-01	ci left: 3.013892e-03	ci right 4.209958e-03	k: 143	n:40000
Cons ci ratio: 2.666635e-02	ci left: 3.460470e-01	ci right 3.554246e-01	k: 14029	n:40000
KS ci ratio: 4.017006e-01	ci left: 1.899444e-03	ci right 2.875048e-03	k: 94	n:40000
RARS2   40000 perm   9 sec   (4517 perm/sec)   p_kst 2.350000e-03   p_cons 3.507250e-01   p_joint 3.575000e-03

Joint ci ratio: 3.460351e-01	ci left: 2.117910e-03	ci right 3.021389e-03	k: 127	n:50000
Cons ci ratio: 2.392934e-02	ci left: 3.450602e-01	ci right 3.534373e-01	k: 17462	n:50000
KS ci ratio: 3.699864e-01	ci left: 1.826608e-03	ci right 2.672846e-03	k: 111	n:50000
RARS2   50000 perm   11 sec   (4411 perm/sec)   p_kst 2.220000e-03   p_cons 3.492400e-01   p_joint 2.540000e-03

Joint ci ratio: 2.074339e-01	ci left: 5.302872e-03	ci right 6.545650e-03	k: 354	n:60000
Cons ci ratio: 2.133471e-02	ci left: 3.562077e-01	ci right 3.639059e-01	k: 21603	n:60000
KS ci ratio: 3.369973e-01	ci left: 1.871544e-03	ci right 2.644532e-03	k: 134	n:60000
RARS2   60000 perm   14 sec   (4322 perm/sec)   p_kst 2.233333e-03   p_cons 3.600500e-01   p_joint 5.900000e-03

Joint ci ratio: 1.944623e-01	ci left: 5.210101e-03	ci right 6.345741e-03	k: 403	n:70000
Cons ci ratio: 1.969508e-02	ci left: 3.578256e-01	ci right 3.649573e-01	k: 25297	n:70000
KS ci ratio: 3.145110e-01	ci left: 1.866556e-03	ci right 2.575719e-03	k: 154	n:70000
RARS2   70000 perm   17 sec   (4237 perm/sec)   p_kst 2.200000e-03   p_cons 3.613857e-01   p_joint 5.757143e-03

Joint ci ratio: 1.985234e-01	ci left: 4.368484e-03	ci right 5.342958e-03	k: 387	n:80000
Cons ci ratio: 1.893487e-02	ci left: 3.455342e-01	ci right 3.521518e-01	k: 27907	n:80000
KS ci ratio: 2.968492e-01	ci left: 1.852532e-03	ci right 2.509407e-03	k: 173	n:80000
RARS2   80000 perm   19 sec   (4159 perm/sec)   p_kst 2.162500e-03   p_cons 3.488375e-01   p_joint 4.837500e-03

Joint ci ratio: 2.157200e-01	ci left: 3.261275e-03	ci right 4.060131e-03	k: 328	n:90000
Cons ci ratio: 1.741887e-02	ci left: 3.569407e-01	ci right 3.632239e-01	k: 32407	n:90000
KS ci ratio: 2.754990e-01	ci left: 1.935518e-03	ci right 2.563920e-03	k: 201	n:90000
RARS2   90000 perm   22 sec   (4093 perm/sec)   p_kst 2.233333e-03   p_cons 3.600778e-01   p_joint 3.644444e-03

Joint ci ratio: 2.085676e-01	ci left: 3.152911e-03	ci right 3.896345e-03	k: 351	n:100000
Cons ci ratio: 1.650060e-02	ci left: 3.577827e-01	ci right 3.637454e-01	k: 36076	n:100000
KS ci ratio: 2.652050e-01	ci left: 1.891119e-03	ci right 2.478354e-03	k: 217	n:100000
RARS2   100000 perm   25 sec   (4025 perm/sec)   p_kst 2.170000e-03   p_cons 3.607600e-01   p_joint 3.510000e-03

Joint ci ratio: 1.396791e-01	ci left: 6.612311e-03	ci right 7.613940e-03	k: 781	n:110000
Cons ci ratio: 1.577176e-02	ci left: 3.567815e-01	ci right 3.624623e-01	k: 39558	n:110000
KS ci ratio: 2.527576e-01	ci left: 1.906225e-03	ci right 2.465996e-03	k: 239	n:110000
RARS2   110000 perm   28 sec   (3960 perm/sec)   p_kst 2.172727e-03   p_cons 3.596182e-01   p_joint 7.100000e-03

Joint ci ratio: 1.498980e-01	ci left: 5.241755e-03	ci right 6.099067e-03	k: 679	n:120000
Cons ci ratio: 1.508564e-02	ci left: 3.573500e-01	ci right 3.627901e-01	k: 43208	n:120000
KS ci ratio: 2.414515e-01	ci left: 1.927178e-03	ci right 2.464000e-03	k: 262	n:120000
RARS2   120000 perm   31 sec   (3894 perm/sec)   p_kst 2.183333e-03   p_cons 3.600667e-01   p_joint 5.658333e-03

Joint ci ratio: 1.523134e-01	ci left: 4.683008e-03	ci right 5.462397e-03	k: 658	n:130000
Cons ci ratio: 1.450852e-02	ci left: 3.569907e-01	ci right 3.622156e-01	k: 46748	n:130000
KS ci ratio: 2.299326e-01	ci left: 1.974374e-03	ci right 2.494383e-03	k: 289	n:130000
RARS2   130000 perm   34 sec   (3833 perm/sec)   p_kst 2.223077e-03   p_cons 3.596000e-01   p_joint 5.061538e-03

Joint ci ratio: 1.458149e-01	ci left: 4.761112e-03	ci right 5.516750e-03	k: 718	n:140000
Cons ci ratio: 1.397493e-02	ci left: 3.572782e-01	ci right 3.623133e-01	k: 50371	n:140000
KS ci ratio: 2.199189e-01	ci left: 2.015348e-03	ci right 2.519907e-03	k: 316	n:140000
RARS2   140000 perm   37 sec   (3774 perm/sec)   p_kst 2.257143e-03   p_cons 3.597929e-01   p_joint 5.128571e-03

Joint ci ratio: 1.435509e-01	ci left: 4.591458e-03	ci right 5.307883e-03	k: 741	n:150000
Cons ci ratio: 1.384869e-02	ci left: 3.457555e-01	ci right 3.505837e-01	k: 52225	n:150000
KS ci ratio: 2.111090e-01	ci left: 2.051283e-03	ci right 2.541606e-03	k: 343	n:150000
RARS2   150000 perm   40 sec   (3719 perm/sec)   p_kst 2.286667e-03   p_cons 3.481667e-01   p_joint 4.940000e-03

Joint ci ratio: 1.393884e-01	ci left: 4.575785e-03	ci right 5.267342e-03	k: 786	n:160000
Cons ci ratio: 1.341000e-02	ci left: 3.457967e-01	ci right 3.504713e-01	k: 55701	n:160000
KS ci ratio: 2.049474e-01	ci left: 2.047491e-03	ci right 2.520834e-03	k: 364	n:160000
RARS2   160000 perm   44 sec   (3661 perm/sec)   p_kst 2.275000e-03   p_cons 3.481313e-01   p_joint 4.912500e-03

Joint ci ratio: 1.361449e-01	ci left: 4.522438e-03	ci right 5.188738e-03	k: 824	n:170000
Cons ci ratio: 1.303281e-02	ci left: 3.450599e-01	ci right 3.495923e-01	k: 59045	n:170000
KS ci ratio: 1.980142e-01	ci left: 2.072280e-03	ci right 2.533191e-03	k: 390	n:170000
RARS2   170000 perm   47 sec   (3608 perm/sec)   p_kst 2.294118e-03   p_cons 3.473235e-01   p_joint 4.847059e-03

Joint ci ratio: 1.100460e-01	ci left: 6.614620e-03	ci right 7.390274e-03	k: 1259	n:180000
Cons ci ratio: 1.299723e-02	ci left: 3.335183e-01	ci right 3.378870e-01	k: 60426	n:180000
KS ci ratio: 1.933739e-01	ci left: 2.057536e-03	ci right 2.503181e-03	k: 409	n:180000
RARS2   180000 perm   51 sec   (3545 perm/sec)   p_kst 2.272222e-03   p_cons 3.357000e-01   p_joint 6.994444e-03

Joint ci ratio: 1.157513e-01	ci left: 5.652563e-03	ci right 6.352112e-03	k: 1139	n:190000
Cons ci ratio: 1.265103e-02	ci left: 3.335607e-01	ci right 3.378127e-01	k: 63780	n:190000
KS ci ratio: 1.897111e-01	ci left: 2.029414e-03	ci right 2.459683e-03	k: 425	n:190000
RARS2   190000 perm   54 sec   (3495 perm/sec)   p_kst 2.236842e-03   p_cons 3.356842e-01   p_joint 5.994737e-03

Joint ci ratio: 1.165424e-01	ci left: 5.297057e-03	ci right 5.957396e-03	k: 1124	n:200000
Cons ci ratio: 1.233802e-02	ci left: 3.333507e-01	ci right 3.374941e-01	k: 67084	n:200000
KS ci ratio: 1.852019e-01	ci left: 2.028016e-03	ci right 2.446620e-03	k: 446	n:200000
RARS2   200000 perm   58 sec   (3447 perm/sec)   p_kst 2.230000e-03   p_cons 3.354200e-01   p_joint 5.620000e-03

Joint ci ratio: 1.242284e-01	ci left: 4.425791e-03	ci right 5.016580e-03	k: 990	n:210000
Cons ci ratio: 1.203029e-02	ci left: 3.337848e-01	ci right 3.378293e-01	k: 70519	n:210000
KS ci ratio: 1.804210e-01	ci left: 2.040501e-03	ci right 2.449623e-03	k: 470	n:210000
RARS2   210000 perm   62 sec   (3403 perm/sec)   p_kst 2.238095e-03   p_cons 3.358048e-01   p_joint 4.714286e-03

Joint ci ratio: 1.212076e-01	ci left: 4.444917e-03	ci right 5.022796e-03	k: 1040	n:220000
Cons ci ratio: 1.175072e-02	ci left: 3.339445e-01	ci right 3.378962e-01	k: 73902	n:220000
KS ci ratio: 1.756369e-01	ci left: 2.060669e-03	ci right 2.461716e-03	k: 496	n:220000
RARS2   220000 perm   66 sec   (3357 perm/sec)   p_kst 2.254545e-03   p_cons 3.359182e-01   p_joint 4.727273e-03

Joint ci ratio: 1.236292e-01	ci left: 4.083025e-03	ci right 4.625235e-03	k: 1000	n:230000
Cons ci ratio: 1.149660e-02	ci left: 3.338264e-01	ci right 3.376908e-01	k: 77224	n:230000
KS ci ratio: 1.728787e-01	ci left: 2.037604e-03	ci right 2.427284e-03	k: 512	n:230000
RARS2   230000 perm   69 sec   (3315 perm/sec)   p_kst 2.226087e-03   p_cons 3.357565e-01   p_joint 4.347826e-03

Joint ci ratio: 1.254789e-01	ci left: 3.795795e-03	ci right 4.307964e-03	k: 971	n:240000
Cons ci ratio: 1.068812e-02	ci left: 3.572469e-01	ci right 3.610898e-01	k: 86200	n:240000
KS ci ratio: 1.689708e-01	ci left: 2.048427e-03	ci right 2.430420e-03	k: 536	n:240000
RARS2   240000 perm   73 sec   (3273 perm/sec)   p_kst 2.233333e-03   p_cons 3.591667e-01   p_joint 4.045833e-03

Joint ci ratio: 1.232804e-01	ci left: 3.779605e-03	ci right 4.280001e-03	k: 1006	n:250000
Cons ci ratio: 1.046523e-02	ci left: 3.575907e-01	ci right 3.613566e-01	k: 89868	n:250000
KS ci ratio: 1.651689e-01	ci left: 2.062310e-03	ci right 2.437379e-03	k: 561	n:250000
RARS2   250000 perm   77 sec   (3230 perm/sec)   p_kst 2.244000e-03   p_cons 3.594720e-01   p_joint 4.024000e-03

Joint ci ratio: 1.001520e-01	ci left: 5.564213e-03	ci right 6.154576e-03	k: 1522	n:260000
Cons ci ratio: 1.026053e-02	ci left: 3.576936e-01	ci right 3.613865e-01	k: 93480	n:260000
KS ci ratio: 1.620282e-01	ci left: 2.064142e-03	ci right 2.431710e-03	k: 583	n:260000
RARS2   260000 perm   82 sec   (3189 perm/sec)   p_kst 2.242308e-03   p_cons 3.595385e-01   p_joint 5.853846e-03

Joint ci ratio: 1.033140e-01	ci left: 5.029596e-03	ci right 5.581105e-03	k: 1431	n:270000
Cons ci ratio: 1.006884e-02	ci left: 3.577230e-01	ci right 3.613467e-01	k: 97074	n:270000
KS ci ratio: 1.589286e-01	ci left: 2.069457e-03	ci right 2.430249e-03	k: 606	n:270000
RARS2   270000 perm   86 sec   (3149 perm/sec)   p_kst 2.244444e-03   p_cons 3.595333e-01   p_joint 5.300000e-03

Joint ci ratio: 1.012823e-01	ci left: 5.051813e-03	ci right 5.594218e-03	k: 1489	n:280000
Cons ci ratio: 9.886820e-03	ci left: 3.577830e-01	ci right 3.613414e-01	k: 100677	n:280000
KS ci ratio: 1.555065e-01	ci left: 2.088184e-03	ci right 2.443672e-03	k: 633	n:280000
RARS2   280000 perm   90 sec   (3110 perm/sec)   p_kst 2.260714e-03   p_cons 3.595607e-01   p_joint 5.317857e-03

Joint ci ratio: 1.035512e-01	ci left: 4.662527e-03	ci right 5.175030e-03	k: 1425	n:290000
Cons ci ratio: 9.716146e-03	ci left: 3.577532e-01	ci right 3.612496e-01	k: 104255	n:290000
KS ci ratio: 1.516081e-01	ci left: 2.125602e-03	ci right 2.477565e-03	k: 666	n:290000
RARS2   290000 perm   94 sec   (3072 perm/sec)   p_kst 2.296552e-03   p_cons 3.595000e-01   p_joint 4.913793e-03

Joint ci ratio: 1.048986e-01	ci left: 4.390205e-03	ci right 4.879440e-03	k: 1389	n:300000
Cons ci ratio: 9.551043e-03	ci left: 3.578692e-01	ci right 3.613069e-01	k: 107876	n:300000
KS ci ratio: 1.487362e-01	ci left: 2.138160e-03	ci right 2.484899e-03	k: 692	n:300000
RARS2   300000 perm   99 sec   (3037 perm/sec)   p_kst 2.306667e-03   p_cons 3.595867e-01   p_joint 4.630000e-03

Joint ci ratio: 1.027743e-01	ci left: 4.430828e-03	ci right 4.913987e-03	k: 1447	n:310000
Cons ci ratio: 9.392632e-03	ci left: 3.580490e-01	ci right 3.614311e-01	k: 111519	n:310000
KS ci ratio: 1.459198e-01	ci left: 2.153075e-03	ci right 2.495045e-03	k: 719	n:310000
RARS2   310000 perm   103 sec   (3001 perm/sec)   p_kst 2.319355e-03   p_cons 3.597387e-01   p_joint 4.667742e-03

Joint ci ratio: 1.048759e-01	ci left: 4.118830e-03	ci right 4.577717e-03	k: 1390	n:320000
Cons ci ratio: 9.490271e-03	ci left: 3.461028e-01	ci right 3.494062e-01	k: 111281	n:320000
KS ci ratio: 1.437406e-01	ci left: 2.152050e-03	ci right 2.488315e-03	k: 741	n:320000
RARS2   320000 perm   108 sec   (2963 perm/sec)   p_kst 2.315625e-03   p_cons 3.477531e-01   p_joint 4.343750e-03

Joint ci ratio: 1.078013e-01	ci left: 3.775701e-03	ci right 4.208838e-03	k: 1316	n:330000
Cons ci ratio: 9.347031e-03	ci left: 3.460477e-01	ci right 3.493004e-01	k: 114732	n:330000
KS ci ratio: 1.413782e-01	ci left: 2.159892e-03	ci right 2.491368e-03	k: 766	n:330000
RARS2   330000 perm   113 sec   (2925 perm/sec)   p_kst 2.321212e-03   p_cons 3.476727e-01   p_joint 3.987879e-03

Joint ci ratio: 1.118437e-01	ci left: 3.398596e-03	ci right 3.804055e-03	k: 1223	n:340000
Cons ci ratio: 9.209072e-03	ci left: 3.460462e-01	ci right 3.492506e-01	k: 118200	n:340000
KS ci ratio: 1.392167e-01	ci left: 2.164477e-03	ci right 2.491157e-03	k: 790	n:340000
RARS2   340000 perm   118 sec   (2892 perm/sec)   p_kst 2.323529e-03   p_cons 3.476471e-01   p_joint 3.597059e-03

Joint ci ratio: 1.127779e-01	ci left: 3.245941e-03	ci right 3.636637e-03	k: 1203	n:350000
Cons ci ratio: 9.074531e-03	ci left: 3.461706e-01	ci right 3.493291e-01	k: 121712	n:350000
KS ci ratio: 1.372359e-01	ci left: 2.166077e-03	ci right 2.487966e-03	k: 813	n:350000
RARS2   350000 perm   123 sec   (2854 perm/sec)   p_kst 2.322857e-03   p_cons 3.477486e-01   p_joint 3.437143e-03

Joint ci ratio: 9.470925e-02	ci left: 4.511731e-03	ci right 4.962964e-03	k: 1704	n:360000
Cons ci ratio: 8.941832e-03	ci left: 3.464855e-01	ci right 3.496003e-01	k: 125295	n:360000
KS ci ratio: 1.354996e-01	ci left: 2.162251e-03	ci right 2.479179e-03	k: 834	n:360000
RARS2   360000 perm   128 sec   (2822 perm/sec)   p_kst 2.316667e-03   p_cons 3.480417e-01   p_joint 4.733333e-03

Joint ci ratio: 9.708936e-02	ci left: 4.173450e-03	ci right 4.601937e-03	k: 1622	n:370000
Cons ci ratio: 8.820717e-03	ci left: 3.464785e-01	ci right 3.495509e-01	k: 128765	n:370000
KS ci ratio: 1.335931e-01	ci left: 2.166493e-03	ci right 2.479220e-03	k: 858	n:370000
RARS2   370000 perm   133 sec   (2791 perm/sec)   p_kst 2.318919e-03   p_cons 3.480135e-01   p_joint 4.383784e-03

Joint ci ratio: 9.565547e-02	ci left: 4.189463e-03	ci right 4.612885e-03	k: 1671	n:380000
Cons ci ratio: 8.702376e-03	ci left: 3.465774e-01	ci right 3.496092e-01	k: 132275	n:380000
KS ci ratio: 1.312446e-01	ci left: 2.188358e-03	ci right 2.498256e-03	k: 889	n:380000
RARS2   380000 perm   138 sec   (2762 perm/sec)   p_kst 2.339474e-03   p_cons 3.480921e-01   p_joint 4.397368e-03

Joint ci ratio: 9.469870e-02	ci left: 4.167143e-03	ci right 4.583863e-03	k: 1705	n:390000
Cons ci ratio: 8.589061e-03	ci left: 3.466509e-01	ci right 3.496437e-01	k: 135777	n:390000
KS ci ratio: 1.297949e-01	ci left: 2.181854e-03	ci right 2.487154e-03	k: 909	n:390000
RARS2   390000 perm   143 sec   (2734 perm/sec)   p_kst 2.330769e-03   p_cons 3.481462e-01   p_joint 4.371795e-03

Joint ci ratio: 9.374302e-02	ci left: 4.148401e-03	ci right 4.558830e-03	k: 1740	n:400000
Cons ci ratio: 8.482395e-03	ci left: 3.465961e-01	ci right 3.495511e-01	k: 139229	n:400000
KS ci ratio: 1.282540e-01	ci left: 2.180532e-03	ci right 2.481750e-03	k: 931	n:400000
RARS2   400000 perm   148 sec   (2704 perm/sec)   p_kst 2.327500e-03   p_cons 3.480725e-01   p_joint 4.350000e-03

Joint ci ratio: 9.490457e-02	ci left: 3.947178e-03	ci right 4.342807e-03	k: 1698	n:410000
Cons ci ratio: 8.376231e-03	ci left: 3.467270e-01	ci right 3.496459e-01	k: 142756	n:410000
KS ci ratio: 1.267002e-01	ci left: 2.181657e-03	ci right 2.479105e-03	k: 954	n:410000
RARS2   410000 perm   153 sec   (2675 perm/sec)   p_kst 2.326829e-03   p_cons 3.481854e-01   p_joint 4.141463e-03

Joint ci ratio: 9.672671e-02	ci left: 3.706770e-03	ci right 4.085839e-03	k: 1635	n:420000
Cons ci ratio: 8.275951e-03	ci left: 3.467424e-01	ci right 3.496263e-01	k: 146237	n:420000
KS ci ratio: 1.252658e-01	ci left: 2.180443e-03	ci right 2.474109e-03	k: 976	n:420000
RARS2   420000 perm   159 sec   (2646 perm/sec)   p_kst 2.323810e-03   p_cons 3.481833e-01   p_joint 3.892857e-03

Joint ci ratio: 9.545109e-02	ci left: 3.720434e-03	ci right 4.095602e-03	k: 1679	n:430000
Cons ci ratio: 8.180907e-03	ci left: 3.466621e-01	ci right 3.495120e-01	k: 149677	n:430000
KS ci ratio: 1.233235e-01	ci left: 2.199588e-03	ci right 2.490904e-03	k: 1007	n:430000
RARS2   430000 perm   164 sec   (2618 perm/sec)   p_kst 2.341860e-03   p_cons 3.480860e-01   p_joint 3.904651e-03

Joint ci ratio: 9.455558e-02	ci left: 3.706876e-03	ci right 4.076976e-03	k: 1711	n:440000
Cons ci ratio: 8.085662e-03	ci left: 3.467763e-01	ci right 3.495939e-01	k: 153201	n:440000
KS ci ratio: 1.218809e-01	ci left: 2.202470e-03	ci right 2.490510e-03	k: 1031	n:440000
RARS2   440000 perm   170 sec   (2591 perm/sec)   p_kst 2.343182e-03   p_cons 3.481841e-01   p_joint 3.888636e-03

Joint ci ratio: 9.379284e-02	ci left: 3.685256e-03	ci right 4.050066e-03	k: 1739	n:450000
Cons ci ratio: 7.992690e-03	ci left: 3.469412e-01	ci right 3.497275e-01	k: 156750	n:450000
KS ci ratio: 1.203167e-01	ci left: 2.211709e-03	ci right 2.496981e-03	k: 1058	n:450000
RARS2   450000 perm   175 sec   (2565 perm/sec)   p_kst 2.351111e-03   p_cons 3.483333e-01   p_joint 3.864444e-03

Joint ci ratio: 9.448056e-02	ci left: 3.552062e-03	ci right 3.906408e-03	k: 1714	n:460000
Cons ci ratio: 7.904138e-03	ci left: 3.470252e-01	ci right 3.497811e-01	k: 160265	n:460000
KS ci ratio: 1.188661e-01	ci left: 2.218460e-03	ci right 2.500910e-03	k: 1084	n:460000
RARS2   460000 perm   181 sec   (2536 perm/sec)   p_kst 2.356522e-03   p_cons 3.484022e-01   p_joint 3.726087e-03

Joint ci ratio: 8.645276e-02	ci left: 4.166973e-03	ci right 4.545560e-03	k: 2046	n:470000
Cons ci ratio: 7.820077e-03	ci left: 3.470122e-01	ci right 3.497386e-01	k: 163736	n:470000
KS ci ratio: 1.177859e-01	ci left: 2.212552e-03	ci right 2.491512e-03	k: 1104	n:470000
RARS2   470000 perm   187 sec   (2510 perm/sec)   p_kst 2.348936e-03   p_cons 3.483745e-01   p_joint 4.353191e-03

Joint ci ratio: 8.647792e-02	ci left: 4.078115e-03	ci right 4.448742e-03	k: 2045	n:480000
Cons ci ratio: 7.739282e-03	ci left: 3.469625e-01	ci right 3.496602e-01	k: 167189	n:480000
KS ci ratio: 1.169955e-01	ci left: 2.196789e-03	ci right 2.471774e-03	k: 1119	n:480000
RARS2   480000 perm   193 sec   (2484 perm/sec)   p_kst 2.331250e-03   p_cons 3.483104e-01   p_joint 4.260417e-03

Joint ci ratio: 8.669471e-02	ci left: 3.974912e-03	ci right 4.337112e-03	k: 2035	n:490000
Cons ci ratio: 7.659115e-03	ci left: 3.470230e-01	ci right 3.496931e-01	k: 170695	n:490000
KS ci ratio: 1.157111e-01	ci left: 2.201492e-03	ci right 2.473834e-03	k: 1144	n:490000
RARS2   490000 perm   199 sec   (2463 perm/sec)   p_kst 2.334694e-03   p_cons 3.483571e-01   p_joint 4.153061e-03

Joint ci ratio: 8.593875e-02	ci left: 3.965859e-03	ci right 4.323924e-03	k: 2071	n:500000
Cons ci ratio: 7.581789e-03	ci left: 3.470572e-01	ci right 3.497005e-01	k: 174189	n:500000
KS ci ratio: 1.149615e-01	ci left: 2.186596e-03	ci right 2.455223e-03	k: 1159	n:500000
RARS2   500000 perm   205 sec   (2440 perm/sec)   p_kst 2.318000e-03   p_cons 3.483780e-01   p_joint 4.142000e-03

Joint ci ratio: 8.518194e-02	ci left: 3.959093e-03	ci right 4.313243e-03	k: 2108	n:510000
Cons ci ratio: 7.509223e-03	ci left: 3.469414e-01	ci right 3.495584e-01	k: 177607	n:510000
KS ci ratio: 1.138385e-01	ci left: 2.187529e-03	ci right 2.453470e-03	k: 1182	n:510000
RARS2   510000 perm   211 sec   (2419 perm/sec)   p_kst 2.317647e-03   p_cons 3.482490e-01   p_joint 4.133333e-03

Joint ci ratio: 8.436586e-02	ci left: 3.960132e-03	ci right 4.310813e-03	k: 2149	n:520000
Cons ci ratio: 7.435771e-03	ci left: 3.470088e-01	ci right 3.496006e-01	k: 181118	n:520000
KS ci ratio: 1.128416e-01	ci left: 2.184700e-03	ci right 2.447817e-03	k: 1203	n:520000
RARS2   520000 perm   217 sec   (2397 perm/sec)   p_kst 2.313462e-03   p_cons 3.483038e-01   p_joint 4.132692e-03

Joint ci ratio: 8.353452e-02	ci left: 3.964841e-03	ci right 4.312312e-03	k: 2192	n:530000
Cons ci ratio: 7.365658e-03	ci left: 3.469984e-01	ci right 3.495655e-01	k: 184589	n:530000
KS ci ratio: 1.116422e-01	ci left: 2.191160e-03	ci right 2.452064e-03	k: 1229	n:530000
RARS2   530000 perm   223 sec   (2375 perm/sec)   p_kst 2.318868e-03   p_cons 3.482811e-01   p_joint 4.135849e-03

Joint ci ratio: 8.291366e-02	ci left: 3.951256e-03	ci right 4.294838e-03	k: 2225	n:540000
Cons ci ratio: 7.295526e-03	ci left: 3.471106e-01	ci right 3.496540e-01	k: 188126	n:540000
KS ci ratio: 1.105687e-01	ci left: 2.193792e-03	ci right 2.452335e-03	k: 1253	n:540000
RARS2   540000 perm   229 sec   (2353 perm/sec)   p_kst 2.320370e-03   p_cons 3.483815e-01   p_joint 4.120370e-03

Joint ci ratio: 8.390655e-02	ci left: 3.786828e-03	ci right 4.120248e-03	k: 2173	n:550000
Cons ci ratio: 7.229734e-03	ci left: 3.470698e-01	ci right 3.495899e-01	k: 191581	n:550000
KS ci ratio: 1.093968e-01	ci left: 2.201646e-03	ci right 2.458187e-03	k: 1280	n:550000
RARS2   550000 perm   236 sec   (2331 perm/sec)   p_kst 2.327273e-03   p_cons 3.483291e-01   p_joint 3.950909e-03

Joint ci ratio: 8.350560e-02	ci left: 3.755919e-03	ci right 4.084960e-03	k: 2194	n:560000
Cons ci ratio: 7.165041e-03	ci left: 3.470717e-01	ci right 3.495692e-01	k: 195059	n:560000
KS ci ratio: 1.084278e-01	ci left: 2.202283e-03	ci right 2.456481e-03	k: 1303	n:560000
RARS2   560000 perm   242 sec   (2310 perm/sec)   p_kst 2.326786e-03   p_cons 3.483196e-01   p_joint 3.917857e-03

Joint ci ratio: 8.292270e-02	ci left: 3.743279e-03	ci right 4.068813e-03	k: 2225	n:570000
Cons ci ratio: 7.102906e-03	ci left: 3.470192e-01	ci right 3.494946e-01	k: 198506	n:570000
KS ci ratio: 1.076468e-01	ci left: 2.196079e-03	ci right 2.447619e-03	k: 1322	n:570000
RARS2   570000 perm   249 sec   (2289 perm/sec)   p_kst 2.319298e-03   p_cons 3.482561e-01   p_joint 3.903509e-03

Joint ci ratio: 8.229694e-02	ci left: 3.736149e-03	ci right 4.058493e-03	k: 2259	n:580000
Cons ci ratio: 7.041022e-03	ci left: 3.470548e-01	ci right 3.495088e-01	k: 202003	n:580000
KS ci ratio: 1.070826e-01	ci left: 2.181704e-03	ci right 2.430205e-03	k: 1336	n:580000
RARS2   580000 perm   256 sec   (2268 perm/sec)   p_kst 2.303448e-03   p_cons 3.482810e-01   p_joint 3.894828e-03

Joint ci ratio: 7.504451e-02	ci left: 4.430589e-03	ci right 4.777693e-03	k: 2715	n:590000
Cons ci ratio: 6.980363e-03	ci left: 3.471130e-01	ci right 3.495461e-01	k: 205514	n:590000
KS ci ratio: 1.060561e-01	ci left: 2.187620e-03	ci right 2.434257e-03	k: 1362	n:590000
RARS2   590000 perm   263 sec   (2246 perm/sec)   p_kst 2.308475e-03   p_cons 3.483288e-01   p_joint 4.601695e-03

Joint ci ratio: 7.462080e-02	ci left: 4.407443e-03	ci right 4.750700e-03	k: 2746	n:600000
Cons ci ratio: 6.921144e-03	ci left: 3.471760e-01	ci right 3.495888e-01	k: 209029	n:600000
KS ci ratio: 1.052486e-01	ci left: 2.185235e-03	ci right 2.429611e-03	k: 1383	n:600000
RARS2   600000 perm   269 sec   (2226 perm/sec)   p_kst 2.305000e-03   p_cons 3.483817e-01   p_joint 4.576667e-03

Joint ci ratio: 7.405704e-02	ci left: 4.402762e-03	ci right 4.742953e-03	k: 2788	n:610000
Cons ci ratio: 6.867150e-03	ci left: 3.469896e-01	ci right 3.493823e-01	k: 212393	n:610000
KS ci ratio: 1.042734e-01	ci left: 2.190918e-03	ci right 2.433520e-03	k: 1409	n:610000
RARS2   610000 perm   276 sec   (2207 perm/sec)   p_kst 2.309836e-03   p_cons 3.481852e-01   p_joint 4.570492e-03

Joint ci ratio: 7.462634e-02	ci left: 4.265256e-03	ci right 4.597465e-03	k: 2746	n:620000
Cons ci ratio: 6.810622e-03	ci left: 3.470608e-01	ci right 3.494342e-01	k: 215913	n:620000
KS ci ratio: 1.034332e-01	ci left: 2.191713e-03	ci right 2.432330e-03	k: 1432	n:620000
RARS2   620000 perm   283 sec   (2188 perm/sec)   p_kst 2.309677e-03   p_cons 3.482468e-01   p_joint 4.429032e-03

Joint ci ratio: 7.398255e-02	ci left: 4.272329e-03	ci right 4.602095e-03	k: 2794	n:630000
Cons ci ratio: 6.757026e-03	ci left: 3.470251e-01	ci right 3.493795e-01	k: 219367	n:630000
KS ci ratio: 1.025073e-01	ci left: 2.197132e-03	ci right 2.436053e-03	k: 1458	n:630000
RARS2   630000 perm   290 sec   (2169 perm/sec)   p_kst 2.314286e-03   p_cons 3.482016e-01   p_joint 4.434921e-03

Joint ci ratio: 7.716945e-02	ci left: 3.860621e-03	ci right 4.172020e-03	k: 2569	n:640000
Cons ci ratio: 6.705045e-03	ci left: 3.469656e-01	ci right 3.493014e-01	k: 222805	n:640000
KS ci ratio: 1.017431e-01	ci left: 2.196298e-03	ci right 2.433243e-03	k: 1480	n:640000
RARS2   640000 perm   298 sec   (2151 perm/sec)   p_kst 2.312500e-03   p_cons 3.481328e-01   p_joint 4.014063e-03

Joint ci ratio: 7.744461e-02	ci left: 3.774063e-03	ci right 4.079615e-03	k: 2551	n:650000
Cons ci ratio: 6.652554e-03	ci left: 3.470233e-01	ci right 3.493411e-01	k: 226318	n:650000
KS ci ratio: 1.010633e-01	ci left: 2.192498e-03	ci right 2.427358e-03	k: 1500	n:650000
RARS2   650000 perm   305 sec   (2133 perm/sec)   p_kst 2.307692e-03   p_cons 3.481815e-01   p_joint 3.924615e-03

Joint ci ratio: 7.726477e-02	ci left: 3.734708e-03	ci right 4.036339e-03	k: 2563	n:660000
Cons ci ratio: 6.601893e-03	ci left: 3.470369e-01	ci right 3.493371e-01	k: 229803	n:660000
KS ci ratio: 1.003308e-01	ci left: 2.191772e-03	ci right 2.424752e-03	k: 1522	n:660000
RARS2   660000 perm   312 sec   (2115 perm/sec)   p_kst 2.306061e-03   p_cons 3.481864e-01   p_joint 3.883333e-03

Joint ci ratio: 7.662468e-02	ci left: 3.741910e-03	ci right 4.041509e-03	k: 2606	n:670000
Cons ci ratio: 6.553688e-03	ci left: 3.469593e-01	ci right 3.492421e-01	k: 233227	n:670000
KS ci ratio: 9.935646e-02	ci left: 2.202718e-03	ci right 2.434455e-03	k: 1552	n:670000
RARS2   670000 perm   320 sec   (2096 perm/sec)   p_kst 2.316418e-03   p_cons 3.481000e-01   p_joint 3.889552e-03

Outputting figure to mutsig2_images.part000000000144/RARS2.5_1817_670000_0.0023164_0.3481_0.0038896.png
                gene_name: RARS2
               theta_stop: 0.099 
                    nperm: 670000 
                     p_ks: 0.0023 
        ci_ks_bounds_left: 0.0022 
       ci_ks_bounds_right: 0.0024 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.0039 
     ci_joint_bounds_left: 0.0037 
    ci_joint_bounds_right: 0.0040 

Current progress: 44 percent done.
RASGRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.059909e-02	ci left: 2.859734e-01	ci right 3.039462e-01	k: 2949	n:10000
Cons ci ratio: 5.874346e-02	ci left: 2.989585e-01	ci right 3.171535e-01	k: 3080	n:10000
KS ci ratio: 8.067374e-02	ci left: 1.832380e-01	ci right 1.987424e-01	k: 1909	n:10000
RASGRP1   10000 perm   2 sec   (5474 perm/sec)   p_kst 1.909000e-01   p_cons 3.080000e-01   p_joint 2.949000e-01

Outputting figure to mutsig2_images.part000000000144/RASGRP1.5_2462_10000_0.1909_0.308_0.2949.png
                gene_name: RASGRP1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 45 percent done.
RASSF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.375459e-02	ci left: 7.225963e-01	ci right 7.400688e-01	k: 7314	n:10000
Cons ci ratio: 4.215870e-02	ci left: 4.537880e-01	ci right 4.734332e-01	k: 4636	n:10000
KS ci ratio: 2.396621e-02	ci left: 7.190618e-01	ci right 7.366053e-01	k: 7279	n:10000
RASSF2   10000 perm   2 sec   (6345 perm/sec)   p_kst 7.279000e-01   p_cons 4.636000e-01   p_joint 7.314000e-01

Outputting figure to mutsig2_images.part000000000144/RASSF2.5_1021_10000_0.7279_0.4636_0.7314.png
                gene_name: RASSF2
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 47 percent done.
RASSF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.513066e-02	ci left: 6.996848e-01	ci right 7.175935e-01	k: 7087	n:10000
KS ci ratio: 2.063072e-02	ci left: 7.748905e-01	ci right 7.911443e-01	k: 7831	n:10000
RASSF9   10000 perm   2 sec   (5574 perm/sec)   p_kst 7.831000e-01   p_cons 7.087000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RASSF9.5_1316_10000_0.7831_0.7087_1.png
                gene_name: RASSF9
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
RBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.751436e-01	ci left: 4.350916e-02	ci right 5.195681e-02	k: 476	n:10000
Cons ci ratio: 2.971815e-01	ci left: 1.455775e-02	ci right 1.972903e-02	k: 170	n:10000
KS ci ratio: 3.602251e-02	ci left: 5.322739e-01	ci right 5.519016e-01	k: 5421	n:10000
RBL1   10000 perm   2 sec   (5151 perm/sec)   p_kst 5.421000e-01   p_cons 1.700000e-02   p_joint 4.760000e-02

Joint ci ratio: 9.162077e-02	ci left: 7.999553e-02	ci right 8.772596e-02	k: 1676	n:20000
Cons ci ratio: 2.166821e-01	ci left: 1.435399e-02	ci right 1.788872e-02	k: 321	n:20000
KS ci ratio: 2.536079e-02	ci left: 5.373667e-01	ci right 5.512204e-01	k: 10886	n:20000
RBL1   20000 perm   4 sec   (4673 perm/sec)   p_kst 5.443000e-01   p_cons 1.605000e-02   p_joint 8.380000e-02

Joint ci ratio: 7.058003e-02	ci left: 8.993318e-02	ci right 9.654584e-02	k: 2796	n:30000
Cons ci ratio: 1.747285e-01	ci left: 1.505690e-02	ci right 1.797116e-02	k: 494	n:30000
KS ci ratio: 2.063243e-02	ci left: 5.404453e-01	ci right 5.517458e-01	k: 16383	n:30000
RBL1   30000 perm   7 sec   (4490 perm/sec)   p_kst 5.461000e-01   p_cons 1.646667e-02   p_joint 9.320000e-02

Joint ci ratio: 5.910362e-02	ci left: 9.613919e-02	ci right 1.020192e-01	k: 3962	n:40000
Cons ci ratio: 1.465389e-01	ci left: 1.628581e-02	ci right 1.888490e-02	k: 702	n:40000
KS ci ratio: 1.701186e-02	ci left: 5.654563e-01	ci right 5.751834e-01	k: 22813	n:40000
RBL1   40000 perm   9 sec   (4250 perm/sec)   p_kst 5.703250e-01   p_cons 1.755000e-02   p_joint 9.905000e-02

Joint ci ratio: 4.922382e-02	ci left: 1.097825e-01	ci right 1.153426e-01	k: 5627	n:50000
Cons ci ratio: 1.299258e-01	ci left: 1.671717e-02	ci right 1.905929e-02	k: 893	n:50000
KS ci ratio: 1.518509e-02	ci left: 5.669682e-01	ci right 5.756636e-01	k: 28566	n:50000
RBL1   50000 perm   12 sec   (4095 perm/sec)   p_kst 5.713200e-01   p_cons 1.786000e-02   p_joint 1.125400e-01

Joint ci ratio: 5.048733e-02	ci left: 8.899028e-02	ci right 9.361601e-02	k: 5477	n:60000
Cons ci ratio: 1.185382e-01	ci left: 1.683795e-02	ci right 1.897571e-02	k: 1073	n:60000
KS ci ratio: 1.385794e-02	ci left: 5.674953e-01	ci right 5.754311e-01	k: 34288	n:60000
RBL1   60000 perm   15 sec   (4039 perm/sec)   p_kst 5.714667e-01   p_cons 1.788333e-02   p_joint 9.128333e-02

Joint ci ratio: 5.429059e-02	ci left: 6.742938e-02	ci right 7.120641e-02	k: 4851	n:70000
Cons ci ratio: 1.099240e-01	ci left: 1.686117e-02	ci right 1.883623e-02	k: 1248	n:70000
KS ci ratio: 1.283511e-02	ci left: 5.675952e-01	ci right 5.749417e-01	k: 39989	n:70000
RBL1   70000 perm   18 sec   (3984 perm/sec)   p_kst 5.712714e-01   p_cons 1.782857e-02   p_joint 6.930000e-02

Joint ci ratio: 4.466516e-02	ci left: 8.586001e-02	ci right 8.979494e-02	k: 7025	n:80000
Cons ci ratio: 1.031350e-01	ci left: 1.682192e-02	ci right 1.866329e-02	k: 1418	n:80000
KS ci ratio: 1.202723e-02	ci left: 5.669735e-01	ci right 5.738464e-01	k: 45633	n:80000
RBL1   80000 perm   20 sec   (3924 perm/sec)   p_kst 5.704125e-01   p_cons 1.772500e-02   p_joint 8.781250e-02

Joint ci ratio: 4.107720e-02	ci left: 8.999826e-02	ci right 9.378365e-02	k: 8269	n:90000
Cons ci ratio: 9.727933e-02	ci left: 1.685940e-02	ci right 1.859411e-02	k: 1594	n:90000
KS ci ratio: 1.133764e-02	ci left: 5.672471e-01	ci right 5.737261e-01	k: 51344	n:90000
RBL1   90000 perm   23 sec   (3869 perm/sec)   p_kst 5.704889e-01   p_cons 1.771111e-02   p_joint 9.187778e-02

Outputting figure to mutsig2_images.part000000000144/RBL1.5_3304_90000_0.57049_0.017711_0.091878.png
                gene_name: RBL1
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.094 

Current progress: 50 percent done.
RBM27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.038162e-02	ci left: 7.790450e-01	ci right 7.951874e-01	k: 7872	n:10000
Cons ci ratio: 1.755337e-02	ci left: 8.255431e-01	ci right 8.402624e-01	k: 8330	n:10000
KS ci ratio: 3.055584e-02	ci left: 6.124120e-01	ci right 6.315169e-01	k: 6220	n:10000
RBM27   10000 perm   2 sec   (4896 perm/sec)   p_kst 6.220000e-01   p_cons 8.330000e-01   p_joint 7.872000e-01

Outputting figure to mutsig2_images.part000000000144/RBM27.5_3267_10000_0.622_0.833_0.7872.png
                gene_name: RBM27
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 52 percent done.
RASEF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.353332e-01	ci left: 7.213925e-02	ci right 8.270848e-02	k: 773	n:10000
Cons ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
KS ci ratio: 1.116695e-01	ci left: 1.035416e-01	ci right 1.158868e-01	k: 1096	n:10000
RASEF   10000 perm   2 sec   (5394 perm/sec)   p_kst 1.096000e-01   p_cons 1.072000e-01   p_joint 7.730000e-02

Joint ci ratio: 1.379597e-01	ci left: 3.611746e-02	ci right 4.151767e-02	k: 775	n:20000
Cons ci ratio: 8.371335e-02	ci left: 9.464903e-02	ci right 1.029680e-01	k: 1975	n:20000
KS ci ratio: 8.096751e-02	ci left: 1.006368e-01	ci right 1.091784e-01	k: 2097	n:20000
RASEF   20000 perm   4 sec   (4766 perm/sec)   p_kst 1.048500e-01   p_cons 9.875000e-02   p_joint 3.875000e-02

Joint ci ratio: 7.502853e-02	ci left: 8.026234e-02	ci right 8.655194e-02	k: 2501	n:30000
Cons ci ratio: 6.458430e-02	ci left: 1.058234e-01	ci right 1.129191e-01	k: 3280	n:30000
KS ci ratio: 6.513167e-02	ci left: 1.042135e-01	ci right 1.112627e-01	k: 3231	n:30000
RASEF   30000 perm   7 sec   (4605 perm/sec)   p_kst 1.077000e-01   p_cons 1.093333e-01   p_joint 8.336667e-02

Outputting figure to mutsig2_images.part000000000144/RASEF.4_2291_30000_0.1077_0.10933_0.083367.png
                gene_name: RASEF
               theta_stop: 0.075 
                    nperm: 30000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.087 

Current progress: 53 percent done.
RASGEF1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.654802e-02	ci left: 5.250651e-01	ci right 5.447146e-01	k: 5349	n:10000
KS ci ratio: 2.014424e-02	ci left: 7.829981e-01	ci right 7.990320e-01	k: 7911	n:10000
RASGEF1B   10000 perm   2 sec   (6216 perm/sec)   p_kst 7.911000e-01   p_cons 5.349000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RASGEF1B.4_1474_10000_0.7911_0.5349_1.png
                gene_name: RASGEF1B
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
RASIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
Cons ci ratio: 1.076856e-01	ci left: 1.106648e-01	ci right 1.233592e-01	k: 1169	n:10000
KS ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
RASIP1   10000 perm   2 sec   (5287 perm/sec)   p_kst 4.200000e-02   p_cons 1.169000e-01   p_joint 4.060000e-02

Joint ci ratio: 1.767584e-01	ci left: 2.187547e-02	ci right 2.616445e-02	k: 479	n:20000
Cons ci ratio: 7.497220e-02	ci left: 1.157235e-01	ci right 1.247872e-01	k: 2404	n:20000
KS ci ratio: 1.325438e-01	ci left: 3.911656e-02	ci right 4.471761e-02	k: 837	n:20000
RASIP1   20000 perm   5 sec   (4367 perm/sec)   p_kst 4.185000e-02   p_cons 1.202000e-01   p_joint 2.395000e-02

Joint ci ratio: 1.752693e-01	ci left: 1.496121e-02	ci right 1.786686e-02	k: 491	n:30000
Cons ci ratio: 6.165772e-02	ci left: 1.150604e-01	ci right 1.224136e-01	k: 3561	n:30000
KS ci ratio: 1.100631e-01	ci left: 3.832970e-02	ci right 4.282649e-02	k: 1216	n:30000
RASIP1   30000 perm   7 sec   (4195 perm/sec)   p_kst 4.053333e-02   p_cons 1.187000e-01   p_joint 1.636667e-02

Joint ci ratio: 1.740303e-01	ci left: 1.143422e-02	ci right 1.363740e-02	k: 500	n:40000
Cons ci ratio: 5.380522e-02	ci left: 1.139891e-01	ci right 1.203166e-01	k: 4685	n:40000
KS ci ratio: 9.583188e-02	ci left: 3.822271e-02	ci right 4.209441e-02	k: 1605	n:40000
RASIP1   40000 perm   10 sec   (4066 perm/sec)   p_kst 4.012500e-02   p_cons 1.171250e-01   p_joint 1.250000e-02

Joint ci ratio: 1.760346e-01	ci left: 8.955101e-03	ci right 1.070251e-02	k: 490	n:50000
Cons ci ratio: 4.826739e-02	ci left: 1.137200e-01	ci right 1.193646e-01	k: 5826	n:50000
KS ci ratio: 8.535006e-02	ci left: 3.874966e-02	ci right 4.222394e-02	k: 2023	n:50000
RASIP1   50000 perm   12 sec   (4050 perm/sec)   p_kst 4.046000e-02   p_cons 1.165200e-01   p_joint 9.800000e-03

Joint ci ratio: 1.352023e-01	ci left: 1.288178e-02	ci right 1.476568e-02	k: 828	n:60000
Cons ci ratio: 4.407408e-02	ci left: 1.139102e-01	ci right 1.190603e-01	k: 6988	n:60000
KS ci ratio: 7.834841e-02	ci left: 3.847869e-02	ci right 4.163267e-02	k: 2402	n:60000
RASIP1   60000 perm   15 sec   (4033 perm/sec)   p_kst 4.003333e-02   p_cons 1.164667e-01   p_joint 1.380000e-02

Joint ci ratio: 1.321480e-01	ci left: 1.159333e-02	ci right 1.324745e-02	k: 868	n:70000
Cons ci ratio: 4.088372e-02	ci left: 1.137074e-01	ci right 1.184673e-01	k: 8125	n:70000
KS ci ratio: 7.228850e-02	ci left: 3.885507e-02	ci right 4.178319e-02	k: 2821	n:70000
RASIP1   70000 perm   18 sec   (3969 perm/sec)   p_kst 4.030000e-02   p_cons 1.160714e-01   p_joint 1.240000e-02

Joint ci ratio: 8.883215e-02	ci left: 2.270589e-02	ci right 2.482884e-02	k: 1900	n:80000
Cons ci ratio: 3.948749e-02	ci left: 1.075052e-01	ci right 1.118482e-01	k: 8773	n:80000
KS ci ratio: 6.796240e-02	ci left: 3.856648e-02	ci right 4.129202e-02	k: 3193	n:80000
RASIP1   80000 perm   20 sec   (3930 perm/sec)   p_kst 3.991250e-02   p_cons 1.096625e-01   p_joint 2.375000e-02

Outputting figure to mutsig2_images.part000000000144/RASIP1.4_2936_80000_0.039912_0.10966_0.02375.png
                gene_name: RASIP1
               theta_stop: 0.089 
                    nperm: 80000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 56 percent done.
RASSF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.156329e-02	ci left: 7.592958e-01	ci right 7.759480e-01	k: 7677	n:10000
Cons ci ratio: 2.384527e-02	ci left: 7.210814e-01	ci right 7.385845e-01	k: 7299	n:10000
KS ci ratio: 3.433571e-02	ci left: 5.560174e-01	ci right 5.755442e-01	k: 5658	n:10000
RASSF4   10000 perm   2 sec   (6492 perm/sec)   p_kst 5.658000e-01   p_cons 7.299000e-01   p_joint 7.677000e-01

Outputting figure to mutsig2_images.part000000000144/RASSF4.4_1006_10000_0.5658_0.7299_0.7677.png
                gene_name: RASSF4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 58 percent done.
RASSF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.080236e-02	ci left: 3.636092e-01	ci right 3.826648e-01	k: 3731	n:10000
Cons ci ratio: 2.684594e-02	ci left: 6.714609e-01	ci right 6.898338e-01	k: 6807	n:10000
KS ci ratio: 1.069109e-01	ci left: 1.121295e-01	ci right 1.248936e-01	k: 1184	n:10000
RASSF8   10000 perm   2 sec   (6229 perm/sec)   p_kst 1.184000e-01   p_cons 6.807000e-01   p_joint 3.731000e-01

Joint ci ratio: 4.610918e-02	ci left: 2.592900e-01	ci right 2.715782e-01	k: 5308	n:20000
Cons ci ratio: 1.919788e-02	ci left: 6.692627e-01	ci right 6.822861e-01	k: 13516	n:20000
KS ci ratio: 7.540047e-02	ci left: 1.145432e-01	ci right 1.235679e-01	k: 2380	n:20000
RASSF8   20000 perm   4 sec   (5529 perm/sec)   p_kst 1.190000e-01   p_cons 6.758000e-01   p_joint 2.654000e-01

Outputting figure to mutsig2_images.part000000000144/RASSF8.4_1321_20000_0.119_0.6758_0.2654.png
                gene_name: RASSF8
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 60 percent done.
RBM22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.599129e-02	ci left: 6.854671e-01	ci right 7.036194e-01	k: 6946	n:10000
Cons ci ratio: 2.327139e-02	ci left: 7.306776e-01	ci right 7.479828e-01	k: 7394	n:10000
KS ci ratio: 2.969783e-02	ci left: 6.257775e-01	ci right 6.447437e-01	k: 6353	n:10000
RBM22   10000 perm   2 sec   (6273 perm/sec)   p_kst 6.353000e-01   p_cons 7.394000e-01   p_joint 6.946000e-01

Outputting figure to mutsig2_images.part000000000144/RBM22.4_1307_10000_0.6353_0.7394_0.6946.png
                gene_name: RBM22
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 61 percent done.
RBM33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.683115e-02	ci left: 4.022303e-01	ci right 4.216210e-01	k: 4119	n:10000
Cons ci ratio: 4.157017e-02	ci left: 4.607769e-01	ci right 4.804402e-01	k: 4706	n:10000
KS ci ratio: 6.261065e-02	ci left: 2.727001e-01	ci right 2.904273e-01	k: 2815	n:10000
RBM33   10000 perm   2 sec   (5109 perm/sec)   p_kst 2.815000e-01   p_cons 4.706000e-01   p_joint 4.119000e-01

Outputting figure to mutsig2_images.part000000000144/RBM33.4_3585_10000_0.2815_0.4706_0.4119.png
                gene_name: RBM33
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 63 percent done.
RASA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.939738e-02	ci left: 6.305025e-01	ci right 6.494159e-01	k: 6400	n:10000
Cons ci ratio: 4.934669e-02	ci left: 3.772388e-01	ci right 3.964272e-01	k: 3868	n:10000
KS ci ratio: 3.371796e-02	ci left: 5.649396e-01	ci right 5.844169e-01	k: 5747	n:10000
RASA2   10000 perm   2 sec   (6112 perm/sec)   p_kst 5.747000e-01   p_cons 3.868000e-01   p_joint 6.400000e-01

Outputting figure to mutsig2_images.part000000000144/RASA2.3_2646_10000_0.5747_0.3868_0.64.png
                gene_name: RASA2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 65 percent done.
RASSF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.065239e-02	ci left: 9.261656e-01	ci right 9.361814e-01	k: 9313	n:10000
Cons ci ratio: 1.297599e-02	ci left: 8.952868e-01	ci right 9.070783e-01	k: 9013	n:10000
KS ci ratio: 3.961172e-02	ci left: 4.848535e-01	ci right 5.045496e-01	k: 4947	n:10000
RASSF5   10000 perm   2 sec   (6238 perm/sec)   p_kst 4.947000e-01   p_cons 9.013000e-01   p_joint 9.313000e-01

Outputting figure to mutsig2_images.part000000000144/RASSF5.3_1405_10000_0.4947_0.9013_0.9313.png
                gene_name: RASSF5
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 66 percent done.
RAVER2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.017928e-02	ci left: 2.888472e-01	ci right 3.068707e-01	k: 2978	n:10000
Cons ci ratio: 4.716131e-02	ci left: 3.988435e-01	ci right 4.182098e-01	k: 4085	n:10000
KS ci ratio: 1.206345e-01	ci left: 8.971071e-02	ci right 1.013261e-01	k: 954	n:10000
RAVER2   10000 perm   2 sec   (5930 perm/sec)   p_kst 9.540000e-02   p_cons 4.085000e-01   p_joint 2.978000e-01

Joint ci ratio: 5.832301e-02	ci left: 1.788488e-01	ci right 1.896432e-01	k: 3684	n:20000
Cons ci ratio: 3.223494e-02	ci left: 4.181851e-01	ci right 4.319367e-01	k: 8501	n:20000
KS ci ratio: 8.292399e-02	ci left: 9.631728e-02	ci right 1.046993e-01	k: 2009	n:20000
RAVER2   20000 perm   4 sec   (5280 perm/sec)   p_kst 1.004500e-01   p_cons 4.250500e-01   p_joint 1.842000e-01

Outputting figure to mutsig2_images.part000000000144/RAVER2.3_2085_20000_0.10045_0.42505_0.1842.png
                gene_name: RAVER2
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 68 percent done.
RBAK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.463565e-03	ci left: 9.613148e-01	ci right 9.686110e-01	k: 9651	n:10000
KS ci ratio: 3.012858e-02	ci left: 6.190435e-01	ci right 6.380815e-01	k: 6286	n:10000
RBAK   10000 perm   2 sec   (6215 perm/sec)   p_kst 6.286000e-01   p_cons 9.651000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RBAK.3_2161_10000_0.6286_0.9651_1.png
                gene_name: RBAK
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
RBM12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.710826e-02	ci left: 1.610145e-01	ci right 1.757792e-01	k: 1683	n:10000
Cons ci ratio: 1.844739e-01	ci left: 3.920326e-02	ci right 4.726556e-02	k: 431	n:10000
KS ci ratio: 3.287702e-02	ci left: 5.772755e-01	ci right 5.966738e-01	k: 5870	n:10000
RBM12   10000 perm   2 sec   (5467 perm/sec)   p_kst 5.870000e-01   p_cons 4.310000e-02   p_joint 1.683000e-01

Joint ci ratio: 5.898128e-02	ci left: 1.755374e-01	ci right 1.862555e-01	k: 3617	n:20000
Cons ci ratio: 1.259415e-01	ci left: 4.328340e-02	ci right 4.914944e-02	k: 923	n:20000
KS ci ratio: 2.328247e-02	ci left: 5.794373e-01	ci right 5.931376e-01	k: 11726	n:20000
RBM12   20000 perm   4 sec   (4897 perm/sec)   p_kst 5.863000e-01   p_cons 4.615000e-02   p_joint 1.808500e-01

Joint ci ratio: 5.686641e-02	ci left: 1.328313e-01	ci right 1.406392e-01	k: 4101	n:30000
Cons ci ratio: 1.011965e-01	ci left: 4.521789e-02	ci right 5.007020e-02	k: 1428	n:30000
KS ci ratio: 1.917678e-02	ci left: 5.764611e-01	ci right 5.876564e-01	k: 17462	n:30000
RBM12   30000 perm   6 sec   (4674 perm/sec)   p_kst 5.820667e-01   p_cons 4.760000e-02   p_joint 1.367000e-01

Joint ci ratio: 4.181221e-02	ci left: 1.763698e-01	ci right 1.839267e-01	k: 7205	n:40000
Cons ci ratio: 8.750253e-02	ci left: 4.568071e-02	ci right 4.988525e-02	k: 1910	n:40000
KS ci ratio: 1.661514e-02	ci left: 5.769979e-01	ci right 5.866902e-01	k: 23274	n:40000
RBM12   40000 perm   9 sec   (4529 perm/sec)   p_kst 5.818500e-01   p_cons 4.775000e-02   p_joint 1.801250e-01

Outputting figure to mutsig2_images.part000000000144/RBM12.3_2803_40000_0.58185_0.04775_0.18013.png
                gene_name: RBM12
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.18 

Current progress: 71 percent done.
RBM15B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.217566e-02	ci left: 4.535883e-01	ci right 4.732330e-01	k: 4634	n:10000
Cons ci ratio: 4.217566e-02	ci left: 4.535883e-01	ci right 4.732330e-01	k: 4634	n:10000
KS ci ratio: 6.670348e-02	ci left: 2.480616e-01	ci right 2.652804e-01	k: 2566	n:10000
RBM15B   10000 perm   2 sec   (5580 perm/sec)   p_kst 2.566000e-01   p_cons 4.634000e-01   p_joint 4.634000e-01

Outputting figure to mutsig2_images.part000000000144/RBM15B.3_2677_10000_0.2566_0.4634_0.4634.png
                gene_name: RBM15B
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 73 percent done.
RBM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.293718e-02	ci left: 2.706208e-01	ci right 2.883078e-01	k: 2794	n:10000
Cons ci ratio: 3.374555e-02	ci left: 5.645385e-01	ci right 5.840182e-01	k: 5743	n:10000
KS ci ratio: 1.501555e-01	ci left: 5.899102e-02	ci right 6.866498e-02	k: 637	n:10000
RBM4   10000 perm   2 sec   (6345 perm/sec)   p_kst 6.370000e-02   p_cons 5.743000e-01   p_joint 2.794000e-01

Joint ci ratio: 6.298386e-02	ci left: 1.571155e-01	ci right 1.673829e-01	k: 3244	n:20000
Cons ci ratio: 2.278680e-02	ci left: 5.898627e-01	ci right 6.035092e-01	k: 11934	n:20000
KS ci ratio: 1.057364e-01	ci left: 6.089032e-02	ci right 6.773701e-02	k: 1285	n:20000
RBM4   20000 perm   4 sec   (5592 perm/sec)   p_kst 6.425000e-02   p_cons 5.967000e-01   p_joint 1.622000e-01

Joint ci ratio: 6.151085e-02	ci left: 1.155537e-01	ci right 1.229202e-01	k: 3576	n:30000
Cons ci ratio: 1.869860e-02	ci left: 5.887180e-01	ci right 5.998637e-01	k: 17829	n:30000
KS ci ratio: 8.713328e-02	ci left: 6.043968e-02	ci right 6.597862e-02	k: 1895	n:30000
RBM4   30000 perm   6 sec   (5296 perm/sec)   p_kst 6.316667e-02   p_cons 5.943000e-01   p_joint 1.192000e-01

Outputting figure to mutsig2_images.part000000000144/RBM4.3_1103_30000_0.063167_0.5943_0.1192.png
                gene_name: RBM4
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 74 percent done.
RBM43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.559658e-02	ci left: 5.381826e-01	ci right 5.577894e-01	k: 5480	n:10000
KS ci ratio: 2.241456e-02	ci left: 7.450311e-01	ci right 7.620210e-01	k: 7536	n:10000
RBM43   10000 perm   1 sec   (6994 perm/sec)   p_kst 7.536000e-01   p_cons 5.480000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RBM43.3_1090_10000_0.7536_0.548_1.png
                gene_name: RBM43
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
RBM4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
Cons ci ratio: 7.874268e-02	ci left: 1.907209e-01	ci right 2.064550e-01	k: 1985	n:10000
KS ci ratio: 2.322340e-01	ci left: 2.447729e-02	ci right 3.100172e-02	k: 276	n:10000
RBM4B   10000 perm   2 sec   (6175 perm/sec)   p_kst 2.760000e-02   p_cons 1.985000e-01   p_joint 4.100000e-02

Joint ci ratio: 1.095169e-01	ci left: 5.689394e-02	ci right 6.353464e-02	k: 1203	n:20000
Cons ci ratio: 5.539321e-02	ci left: 1.946732e-01	ci right 2.058141e-01	k: 4004	n:20000
KS ci ratio: 1.662350e-01	ci left: 2.479765e-02	ci right 2.934125e-02	k: 540	n:20000
RBM4B   20000 perm   4 sec   (5436 perm/sec)   p_kst 2.700000e-02   p_cons 2.002000e-01   p_joint 6.015000e-02

Joint ci ratio: 7.134208e-02	ci left: 8.816204e-02	ci right 9.471733e-02	k: 2742	n:30000
Cons ci ratio: 4.512760e-02	ci left: 1.964115e-01	ci right 2.055131e-01	k: 6028	n:30000
KS ci ratio: 1.352610e-01	ci left: 2.538853e-02	ci right 2.910379e-02	k: 816	n:30000
RBM4B   30000 perm   6 sec   (5272 perm/sec)   p_kst 2.720000e-02   p_cons 2.009333e-01   p_joint 9.140000e-02

Joint ci ratio: 8.347472e-02	ci left: 5.006480e-02	ci right 5.445049e-02	k: 2089	n:40000
Cons ci ratio: 3.907768e-02	ci left: 1.970572e-01	ci right 2.049362e-01	k: 8039	n:40000
KS ci ratio: 1.189674e-01	ci left: 2.485083e-02	ci right 2.801843e-02	k: 1056	n:40000
RBM4B   40000 perm   8 sec   (5123 perm/sec)   p_kst 2.640000e-02   p_cons 2.009750e-01   p_joint 5.222500e-02

Joint ci ratio: 8.844715e-02	ci left: 3.612567e-02	ci right 3.948826e-02	k: 1889	n:50000
Cons ci ratio: 3.487619e-02	ci left: 1.981703e-01	ci right 2.052244e-01	k: 10084	n:50000
KS ci ratio: 1.065426e-01	ci left: 2.495385e-02	ci right 2.778150e-02	k: 1317	n:50000
RBM4B   50000 perm   10 sec   (5001 perm/sec)   p_kst 2.634000e-02   p_cons 2.016800e-01   p_joint 3.778000e-02

Joint ci ratio: 7.308743e-02	ci left: 4.407544e-02	ci right 4.743534e-02	k: 2744	n:60000
Cons ci ratio: 3.184902e-02	ci left: 1.983629e-01	ci right 2.047994e-01	k: 12094	n:60000
KS ci ratio: 9.712117e-02	ci left: 2.514807e-02	ci right 2.773135e-02	k: 1585	n:60000
RBM4B   60000 perm   12 sec   (4896 perm/sec)   p_kst 2.641667e-02   p_cons 2.015667e-01   p_joint 4.573333e-02

Outputting figure to mutsig2_images.part000000000144/RBM4B.3_1088_60000_0.026417_0.20157_0.045733.png
                gene_name: RBM4B
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 77 percent done.
RBM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.242237e-02	ci left: 4.506935e-01	ci right 4.703295e-01	k: 4605	n:10000
KS ci ratio: 8.377591e-03	ci left: 9.522126e-01	ci right 9.603189e-01	k: 9564	n:10000
RBM5   10000 perm   2 sec   (5545 perm/sec)   p_kst 9.564000e-01   p_cons 4.605000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RBM5.3_2544_10000_0.9564_0.4605_1.png
                gene_name: RBM5
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
RASAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.881014e-02	ci left: 3.824141e-01	ci right 4.016488e-01	k: 3920	n:10000
Cons ci ratio: 5.099836e-02	ci left: 3.618190e-01	ci right 3.808560e-01	k: 3713	n:10000
KS ci ratio: 8.561466e-02	ci left: 1.658291e-01	ci right 1.807618e-01	k: 1732	n:10000
RASAL1   10000 perm   2 sec   (6178 perm/sec)   p_kst 1.732000e-01   p_cons 3.713000e-01   p_joint 3.920000e-01

Outputting figure to mutsig2_images.part000000000144/RASAL1.2_2499_10000_0.1732_0.3713_0.392.png
                gene_name: RASAL1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 81 percent done.
RASGEF1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.647540e-02	ci left: 4.059166e-01	ci right 4.253326e-01	k: 4156	n:10000
Cons ci ratio: 4.489509e-02	ci left: 4.227607e-01	ci right 4.422786e-01	k: 4325	n:10000
KS ci ratio: 3.340863e-02	ci left: 5.694520e-01	ci right 5.889019e-01	k: 5792	n:10000
RASGEF1A   10000 perm   2 sec   (6537 perm/sec)   p_kst 5.792000e-01   p_cons 4.325000e-01   p_joint 4.156000e-01

Outputting figure to mutsig2_images.part000000000144/RASGEF1A.2_1494_10000_0.5792_0.4325_0.4156.png
                gene_name: RASGEF1A
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 82 percent done.
RASGEF1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.148091e-01	ci left: 9.837525e-02	ci right 1.104563e-01	k: 1043	n:10000
Cons ci ratio: 7.688723e-02	ci left: 1.983069e-01	ci right 2.142646e-01	k: 2062	n:10000
KS ci ratio: 1.072707e-01	ci left: 1.114460e-01	ci right 1.241776e-01	k: 1177	n:10000
RASGEF1C   10000 perm   2 sec   (6342 perm/sec)   p_kst 1.177000e-01   p_cons 2.062000e-01   p_joint 1.043000e-01

Joint ci ratio: 6.943580e-02	ci left: 1.326567e-01	ci right 1.422490e-01	k: 2748	n:20000
Cons ci ratio: 5.276098e-02	ci left: 2.105610e-01	ci right 2.220216e-01	k: 4325	n:20000
KS ci ratio: 7.664826e-02	ci left: 1.111998e-01	ci right 1.201123e-01	k: 2312	n:20000
RASGEF1C   20000 perm   4 sec   (5659 perm/sec)   p_kst 1.156000e-01   p_cons 2.162500e-01   p_joint 1.374000e-01

Outputting figure to mutsig2_images.part000000000144/RASGEF1C.2_1453_20000_0.1156_0.21625_0.1374.png
                gene_name: RASGEF1C
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 84 percent done.
RASGRP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.576124e-03	ci left: 9.501268e-01	ci right 9.584059e-01	k: 9544	n:10000
KS ci ratio: 1.698263e-02	ci left: 8.347018e-01	ci right 8.490984e-01	k: 8420	n:10000
RASGRP4   10000 perm   2 sec   (6083 perm/sec)   p_kst 8.420000e-01   p_cons 9.544000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RASGRP4.2_2090_10000_0.842_0.9544_1.png
                gene_name: RASGRP4
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
RASL11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.225767e-02	ci left: 7.476605e-01	ci right 7.645900e-01	k: 7562	n:10000
Cons ci ratio: 2.139402e-02	ci left: 7.621300e-01	ci right 7.787122e-01	k: 7705	n:10000
KS ci ratio: 3.475682e-02	ci left: 5.500043e-01	ci right 5.695609e-01	k: 5598	n:10000
RASL11A   10000 perm   1 sec   (7141 perm/sec)   p_kst 5.598000e-01   p_cons 7.705000e-01   p_joint 7.562000e-01

Outputting figure to mutsig2_images.part000000000144/RASL11A.2_745_10000_0.5598_0.7705_0.7562.png
                gene_name: RASL11A
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 87 percent done.
RASSF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.165721e-01	ci left: 1.270967e-02	ci right 1.757875e-02	k: 150	n:10000
Cons ci ratio: 1.034263e-01	ci left: 1.190667e-01	ci right 1.321523e-01	k: 1255	n:10000
KS ci ratio: 1.620135e-01	ci left: 5.080410e-02	ci right 5.985714e-02	k: 552	n:10000
RASSF6   10000 perm   1 sec   (6835 perm/sec)   p_kst 5.520000e-02   p_cons 1.255000e-01   p_joint 1.500000e-02

Joint ci ratio: 8.486178e-02	ci left: 9.229449e-02	ci right 1.005233e-01	k: 1927	n:20000
Cons ci ratio: 7.255777e-02	ci left: 1.227101e-01	ci right 1.319986e-01	k: 2546	n:20000
KS ci ratio: 1.153381e-01	ci left: 5.144255e-02	ci right 5.778772e-02	k: 1091	n:20000
RASSF6   20000 perm   3 sec   (6065 perm/sec)   p_kst 5.455000e-02   p_cons 1.273000e-01   p_joint 9.635000e-02

Joint ci ratio: 6.901285e-02	ci left: 9.373909e-02	ci right 1.004725e-01	k: 2912	n:30000
Cons ci ratio: 5.910621e-02	ci left: 1.240744e-01	ci right 1.316645e-01	k: 3835	n:30000
KS ci ratio: 9.525516e-02	ci left: 5.088254e-02	ci right 5.600438e-02	k: 1602	n:30000
RASSF6   30000 perm   5 sec   (5740 perm/sec)   p_kst 5.340000e-02   p_cons 1.278333e-01   p_joint 9.706667e-02

Outputting figure to mutsig2_images.part000000000144/RASSF6.2_1154_30000_0.0534_0.12783_0.097067.png
                gene_name: RASSF6
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.10 

Current progress: 89 percent done.
RBBP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.634954e-03	ci left: 9.495015e-01	ci right 9.578316e-01	k: 9538	n:10000
Cons ci ratio: 5.501991e-02	ci left: 3.273369e-01	ci right 3.459583e-01	k: 3366	n:10000
KS ci ratio: 1.634652e-02	ci left: 8.447858e-01	ci right 8.588086e-01	k: 8519	n:10000
RBBP5   10000 perm   2 sec   (6294 perm/sec)   p_kst 8.519000e-01   p_cons 3.366000e-01   p_joint 9.538000e-01

Outputting figure to mutsig2_images.part000000000144/RBBP5.2_1673_10000_0.8519_0.3366_0.9538.png
                gene_name: RBBP5
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 90 percent done.
RBBP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.863244e-03	ci left: 9.574375e-01	ci right 9.650907e-01	k: 9614	n:10000
Cons ci ratio: 5.344429e-02	ci left: 3.403483e-01	ci right 3.591393e-01	k: 3497	n:10000
KS ci ratio: 1.209756e-02	ci left: 9.074079e-01	ci right 9.185501e-01	k: 9131	n:10000
RBBP8   10000 perm   2 sec   (5836 perm/sec)   p_kst 9.131000e-01   p_cons 3.497000e-01   p_joint 9.614000e-01

Outputting figure to mutsig2_images.part000000000144/RBBP8.2_2773_10000_0.9131_0.3497_0.9614.png
                gene_name: RBBP8
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 92 percent done.
RBM17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.435966e-02	ci left: 7.124997e-01	ci right 7.301712e-01	k: 7214	n:10000
KS ci ratio: 1.606345e-01	ci left: 5.166964e-02	ci right 6.079103e-02	k: 561	n:10000
RBM17   10000 perm   1 sec   (6790 perm/sec)   p_kst 5.610000e-02   p_cons 7.214000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.739671e-02	ci left: 7.111035e-01	ci right 7.236333e-01	k: 14348	n:20000
KS ci ratio: 1.148937e-01	ci left: 5.183164e-02	ci right 5.819850e-02	k: 1099	n:20000
RBM17   20000 perm   3 sec   (6042 perm/sec)   p_kst 5.495000e-02   p_cons 7.174000e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.416593e-02	ci left: 7.133733e-01	ci right 7.235844e-01	k: 21555	n:30000
KS ci ratio: 9.283262e-02	ci left: 5.348987e-02	ci right 5.872984e-02	k: 1682	n:30000
RBM17   30000 perm   5 sec   (5744 perm/sec)   p_kst 5.606667e-02   p_cons 7.185000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RBM17.2_1250_30000_0.056067_0.7185_1.png
                gene_name: RBM17
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
RBM24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.752686e-02	ci left: 1.956464e-01	ci right 2.115267e-01	k: 2035	n:10000
Cons ci ratio: 6.100950e-02	ci left: 2.831991e-01	ci right 3.011221e-01	k: 2921	n:10000
KS ci ratio: 8.776711e-02	ci left: 1.589518e-01	ci right 1.736431e-01	k: 1662	n:10000
RBM24   10000 perm   1 sec   (6691 perm/sec)   p_kst 1.662000e-01   p_cons 2.921000e-01   p_joint 2.035000e-01

Outputting figure to mutsig2_images.part000000000144/RBM24.2_760_10000_0.1662_0.2921_0.2035.png
                gene_name: RBM24
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 95 percent done.
RBM41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.846048e-02	ci left: 8.108033e-01	ci right 8.260108e-01	k: 8185	n:10000
KS ci ratio: 1.106241e-02	ci left: 9.210038e-01	ci right 9.313463e-01	k: 9263	n:10000
RBM41   10000 perm   2 sec   (6474 perm/sec)   p_kst 9.263000e-01   p_cons 8.185000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000144/RBM41.2_1279_10000_0.9263_0.8185_1.png
                gene_name: RBM41
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
RBM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131226e-01	ci left: 1.011041e-01	ci right 1.133258e-01	k: 1071	n:10000
Cons ci ratio: 5.706448e-02	ci left: 3.113568e-01	ci right 3.297478e-01	k: 3205	n:10000
KS ci ratio: 1.883815e-01	ci left: 3.757958e-02	ci right 4.549032e-02	k: 414	n:10000
RBM7   10000 perm   2 sec   (6657 perm/sec)   p_kst 4.140000e-02   p_cons 3.205000e-01   p_joint 1.071000e-01

Joint ci ratio: 1.275416e-01	ci left: 4.221676e-02	ci right 4.801642e-02	k: 901	n:20000
Cons ci ratio: 4.047145e-02	ci left: 3.127908e-01	ci right 3.257618e-01	k: 6385	n:20000
KS ci ratio: 1.374079e-01	ci left: 3.640751e-02	ci right 4.182754e-02	k: 781	n:20000
RBM7   20000 perm   3 sec   (5753 perm/sec)   p_kst 3.905000e-02   p_cons 3.192500e-01   p_joint 4.505000e-02

Joint ci ratio: 1.147108e-01	ci left: 3.531357e-02	ci right 3.964326e-02	k: 1123	n:30000
Cons ci ratio: 3.322046e-02	ci left: 3.117027e-01	ci right 3.222661e-01	k: 9509	n:30000
KS ci ratio: 1.126948e-01	ci left: 3.657794e-02	ci right 4.097862e-02	k: 1162	n:30000
RBM7   30000 perm   5 sec   (5530 perm/sec)   p_kst 3.873333e-02   p_cons 3.169667e-01   p_joint 3.743333e-02

Joint ci ratio: 1.292602e-01	ci left: 2.102048e-02	ci right 2.394941e-02	k: 898	n:40000
Cons ci ratio: 2.874156e-02	ci left: 3.128394e-01	ci right 3.219871e-01	k: 12696	n:40000
KS ci ratio: 9.784887e-02	ci left: 3.668440e-02	ci right 4.048296e-02	k: 1542	n:40000
RBM7   40000 perm   7 sec   (5350 perm/sec)   p_kst 3.855000e-02   p_cons 3.174000e-01   p_joint 2.245000e-02

Joint ci ratio: 7.323138e-02	ci left: 5.221172e-02	ci right 5.620024e-02	k: 2709	n:50000
Cons ci ratio: 2.576578e-02	ci left: 3.123442e-01	ci right 3.205171e-01	k: 15821	n:50000
KS ci ratio: 8.737176e-02	ci left: 3.700662e-02	ci right 4.040720e-02	k: 1934	n:50000
RBM7   50000 perm   10 sec   (5217 perm/sec)   p_kst 3.868000e-02   p_cons 3.164200e-01   p_joint 5.418000e-02

Outputting figure to mutsig2_images.part000000000144/RBM7.2_821_50000_0.03868_0.31642_0.05418.png
                gene_name: RBM7
               theta_stop: 0.087 
                    nperm: 50000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.052 
    ci_joint_bounds_right: 0.056 

Current progress: 98 percent done.
RBM9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.931451e-02	ci left: 6.318096e-01	ci right 6.507081e-01	k: 6413	n:10000
Cons ci ratio: 1.796173e-02	ci left: 8.189333e-01	ci right 8.338761e-01	k: 8265	n:10000
KS ci ratio: 3.843345e-02	ci left: 4.999504e-01	ci right 5.196439e-01	k: 5098	n:10000
RBM9   10000 perm   2 sec   (6365 perm/sec)   p_kst 5.098000e-01   p_cons 8.265000e-01   p_joint 6.413000e-01

Outputting figure to mutsig2_images.part000000000144/RBM9.2_1453_10000_0.5098_0.8265_0.6413.png
                gene_name: RBM9
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000144
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 144 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1723>
Subject: Job 9894108: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1723>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000145> was used as the working directory.
Started at Sat Oct  6 00:27:04 2012
Results reported at Sat Oct  6 00:45:33 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000145.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000145.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 145  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000145.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1122.56 sec.
    Max Memory :      3582 MB
    Max Swap   :      5912 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
145
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 145
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 145: processing genes 12983 - 13072
Calculating significance of each gene.
Using projection method.
12983	RBMX	6.580196e-01
12984	RBMX2	7.168324e-01
12985	RBMXL1	1
12986	RBMXL2	8.215179e-01
12987	RBP1	1.227784e-01
12988	RBP2	4.642689e-01
12989	RBP3	8.961899e-01
12990	RBP4	6.447118e-01
12991	RBP5	4.090430e-01
12992	RBP7	4.885551e-01
12993	RBPJ	3.557527e-01
12994	RBPJL	4.445641e-01
12995	RBPMS	6.898397e-01
12996	RBPMS2	2.572031e-01
12997	RBX1	2.045556e-01
12998	RC3H1	5.369098e-01
12999	RC3H2	9.638703e-01
13000/18030 13000	RCAN1	1.998650e-01
13001	RCAN2	1
13002	RCAN3	4.035061e-01
13003	RCBTB1	8.777426e-01
13004	RCBTB2	7.752857e-01
13005	RCC1	6.208104e-01
13006	RCC2	1.114856e-01
13007	RCCD1	3.079502e-01
13008	RCE1	8.744212e-01
13009	RCHY1	2.459284e-01
13010	RCL1	6.254886e-01
13011	RCN1	3.194157e-01
13012	RCN2	7.253916e-01
13013	RCN3	5.518911e-01
13014	RCOR1	8.298584e-01
13015	RCOR2	9.513701e-01
13016	RCOR3	3.001379e-02
13017	RCSD1	5.332937e-02
13018	RCVRN	1.918355e-01
13019	RD3	1.793215e-01
13020	RDBP	8.380867e-01
13021	RDH10	3.342567e-02
13022	RDH11	8.452882e-01
13023	RDH12	3.133942e-01
13024	RDH13	8.520104e-01
13025	RDH14	1
13026	RDH16	2.331822e-01
13027	RDH5	5.309380e-01
13028	RDH8	3.548447e-01
13029	RDM1	1
13030	RDX	3.217847e-01
13031	REC8	8.693768e-01
13032	RECK	5.172527e-01
13033	RECQL	3.182860e-01
13034	RECQL4	1
13035	RECQL5	4.408005e-01
13036	REEP1	1
13037	REEP2	7.520614e-02
13038	REEP3	4.974716e-01
13039	REEP4	1
13040	REEP5	5.841451e-01
13041	REEP6	1
13042	REG1A	5.257444e-04
13043	REG1B	6.934960e-02
13044	REG3A	5.422436e-03
13045	REG3G	3.922825e-01
13046	REG4	1
13047	REL	5.211189e-01
13048	RELA	6.853708e-01
13049	RELB	1
13050	RELL1	7.764768e-01
13051	RELL2	4.330558e-01
13052	RELN	2.688640e-02
13053	RELT	3.767310e-01
13054	REM1	3.736400e-01
13055	REM2	1
13056	REN	1.803068e-01
13057	RENBP	8.046383e-01
13058	REP15	6.024171e-01
13059	REPIN1	1
13060	REPS1	5.829001e-01
13061	REPS2	5.783289e-01
13062	RER1	1
13063	RERE	9.817647e-01
13064	RERG	2.630910e-02
13065	RERGL	3.399335e-02
13066	REST	5.218080e-01
13067	RET	2.157175e-01
13068	RETN	1
13069	RETNLB	1
13070	RETSAT	4.264097e-01
13071	REV1	5.207448e-01
13072	REV3L	1.646458e-01
Done

Running MutSig 2:
Scatter job 145: processing genes 12983 - 13072
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RELN
Processing conservation and coverage...
93% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.539792e-01	ci left: 5.726273e-03	ci right 9.170022e-03	k: 73	n:10000
Cons ci ratio: 1.244153e-01	ci left: 8.465526e-02	ci right 9.598471e-02	k: 902	n:10000
KS ci ratio: 6.521239e-01	ci left: 2.439052e-03	ci right 4.864323e-03	k: 35	n:10000
RELN   10000 perm   3 sec   (3691 perm/sec)   p_kst 3.500000e-03   p_cons 9.020000e-02   p_joint 7.300000e-03

Joint ci ratio: 4.319925e-01	ci left: 3.217547e-03	ci right 5.031303e-03	k: 81	n:20000
Cons ci ratio: 8.914826e-02	ci left: 8.420687e-02	ci right 9.211334e-02	k: 1762	n:20000
KS ci ratio: 4.710861e-01	ci left: 2.641171e-03	ci right 4.308347e-03	k: 68	n:20000
RELN   20000 perm   8 sec   (2658 perm/sec)   p_kst 3.400000e-03   p_cons 8.810000e-02   p_joint 4.050000e-03

Joint ci ratio: 2.621136e-01	ci left: 6.430299e-03	ci right 8.400236e-03	k: 221	n:30000
Cons ci ratio: 7.290317e-02	ci left: 8.468649e-02	ci right 9.112691e-02	k: 2636	n:30000
KS ci ratio: 3.973651e-01	ci left: 2.592756e-03	ci right 3.906364e-03	k: 96	n:30000
RELN   30000 perm   11 sec   (2806 perm/sec)   p_kst 3.200000e-03   p_cons 8.786667e-02   p_joint 7.366667e-03

Joint ci ratio: 2.785964e-01	ci left: 4.239341e-03	ci right 5.634023e-03	k: 196	n:40000
Cons ci ratio: 6.337363e-02	ci left: 8.452665e-02	ci right 9.008343e-02	k: 3491	n:40000
KS ci ratio: 3.459232e-01	ci left: 2.647521e-03	ci right 3.776509e-03	k: 127	n:40000
RELN   40000 perm   14 sec   (2877 perm/sec)   p_kst 3.175000e-03   p_cons 8.727500e-02   p_joint 4.900000e-03

Joint ci ratio: 1.854161e-01	ci left: 8.038148e-03	ci right 9.699627e-03	k: 442	n:50000
Cons ci ratio: 5.355520e-02	ci left: 9.418219e-02	ci right 9.938473e-02	k: 4838	n:50000
KS ci ratio: 3.084384e-01	ci left: 2.723992e-03	ci right 3.735045e-03	k: 160	n:50000
RELN   50000 perm   17 sec   (2908 perm/sec)   p_kst 3.200000e-03   p_cons 9.676000e-02   p_joint 8.840000e-03

Joint ci ratio: 2.080242e-01	ci left: 5.271264e-03	ci right 6.510597e-03	k: 352	n:60000
Cons ci ratio: 4.906135e-02	ci left: 9.380242e-02	ci right 9.853673e-02	k: 5769	n:60000
KS ci ratio: 2.869801e-01	ci left: 2.655564e-03	ci right 3.560224e-03	k: 185	n:60000
RELN   60000 perm   21 sec   (2902 perm/sec)   p_kst 3.083333e-03   p_cons 9.615000e-02   p_joint 5.866667e-03

Joint ci ratio: 1.942207e-01	ci left: 5.223695e-03	ci right 6.360716e-03	k: 404	n:70000
Cons ci ratio: 4.534629e-02	ci left: 9.426566e-02	ci right 9.865357e-02	k: 6751	n:70000
KS ci ratio: 2.586150e-01	ci left: 2.848612e-03	ci right 3.707665e-03	k: 228	n:70000
RELN   70000 perm   24 sec   (2905 perm/sec)   p_kst 3.257143e-03   p_cons 9.644286e-02   p_joint 5.771429e-03

Joint ci ratio: 2.214917e-01	ci left: 3.468112e-03	ci right 4.343470e-03	k: 311	n:80000
Cons ci ratio: 4.233438e-02	ci left: 9.474706e-02	ci right 9.885723e-02	k: 7743	n:80000
KS ci ratio: 2.431808e-01	ci left: 2.843974e-03	ci right 3.642723e-03	k: 258	n:80000
RELN   80000 perm   28 sec   (2901 perm/sec)   p_kst 3.225000e-03   p_cons 9.678750e-02   p_joint 3.887500e-03

Joint ci ratio: 1.684964e-01	ci left: 5.473942e-03	ci right 6.491628e-03	k: 537	n:90000
Cons ci ratio: 3.976184e-02	ci left: 9.552539e-02	ci right 9.941171e-02	k: 8771	n:90000
KS ci ratio: 2.302164e-01	ci left: 2.841554e-03	ci right 3.591032e-03	k: 288	n:90000
RELN   90000 perm   31 sec   (2890 perm/sec)   p_kst 3.200000e-03   p_cons 9.745556e-02   p_joint 5.966667e-03

Joint ci ratio: 1.613193e-01	ci left: 5.396314e-03	ci right 6.352689e-03	k: 586	n:100000
Cons ci ratio: 3.680502e-02	ci left: 1.000018e-01	ci right 1.037613e-01	k: 10187	n:100000
KS ci ratio: 2.194718e-01	ci left: 2.831071e-03	ci right 3.538232e-03	k: 317	n:100000
RELN   100000 perm   35 sec   (2876 perm/sec)   p_kst 3.170000e-03   p_cons 1.018700e-01   p_joint 5.860000e-03

Joint ci ratio: 1.745577e-01	ci left: 4.165201e-03	ci right 4.970354e-03	k: 501	n:110000
Cons ci ratio: 3.506749e-02	ci left: 1.002175e-01	ci right 1.038036e-01	k: 11220	n:110000
KS ci ratio: 2.074222e-01	ci left: 2.900712e-03	ci right 3.580442e-03	k: 355	n:110000
RELN   110000 perm   38 sec   (2859 perm/sec)   p_kst 3.227273e-03   p_cons 1.020000e-01   p_joint 4.554545e-03

Joint ci ratio: 1.456502e-01	ci left: 5.562830e-03	ci right 6.444633e-03	k: 719	n:120000
Cons ci ratio: 3.352594e-02	ci left: 1.005578e-01	ci right 1.039948e-01	k: 12272	n:120000
KS ci ratio: 1.997205e-01	ci left: 2.880425e-03	ci right 3.527286e-03	k: 383	n:120000
RELN   120000 perm   42 sec   (2840 perm/sec)   p_kst 3.191667e-03   p_cons 1.022667e-01   p_joint 5.991667e-03

Joint ci ratio: 1.949655e-01	ci left: 2.797774e-03	ci right 3.409338e-03	k: 402	n:130000
Cons ci ratio: 3.220496e-02	ci left: 1.006577e-01	ci right 1.039601e-01	k: 13299	n:130000
KS ci ratio: 1.954526e-01	ci left: 2.783140e-03	ci right 3.393205e-03	k: 400	n:130000
RELN   130000 perm   46 sec   (2820 perm/sec)   p_kst 3.076923e-03   p_cons 1.023000e-01   p_joint 3.092308e-03

Joint ci ratio: 1.914463e-01	ci left: 2.699880e-03	ci right 3.278152e-03	k: 417	n:140000
Cons ci ratio: 3.104806e-02	ci left: 1.006321e-01	ci right 1.038129e-01	k: 14310	n:140000
KS ci ratio: 1.880910e-01	ci left: 2.801947e-03	ci right 3.390360e-03	k: 432	n:140000
RELN   140000 perm   50 sec   (2799 perm/sec)   p_kst 3.085714e-03   p_cons 1.022143e-01   p_joint 2.978571e-03

Joint ci ratio: 1.671474e-01	ci left: 3.347921e-03	ci right 3.964842e-03	k: 547	n:150000
Cons ci ratio: 3.000097e-02	ci left: 1.006516e-01	ci right 1.037238e-01	k: 15327	n:150000
KS ci ratio: 1.803397e-01	ci left: 2.856813e-03	ci right 3.429326e-03	k: 470	n:150000
RELN   150000 perm   54 sec   (2775 perm/sec)   p_kst 3.133333e-03   p_cons 1.021800e-01   p_joint 3.646667e-03

Joint ci ratio: 1.643321e-01	ci left: 3.252487e-03	ci right 3.840729e-03	k: 566	n:160000
Cons ci ratio: 2.906006e-02	ci left: 1.006267e-01	ci right 1.036002e-01	k: 16337	n:160000
KS ci ratio: 1.746829e-01	ci left: 2.863405e-03	ci right 3.417341e-03	k: 501	n:160000
RELN   160000 perm   58 sec   (2753 perm/sec)   p_kst 3.131250e-03   p_cons 1.021062e-01   p_joint 3.537500e-03

Joint ci ratio: 1.619314e-01	ci left: 3.157069e-03	ci right 3.718899e-03	k: 583	n:170000
Cons ci ratio: 2.820700e-02	ci left: 1.005769e-01	ci right 1.034602e-01	k: 17342	n:170000
KS ci ratio: 1.684213e-01	ci left: 2.908909e-03	ci right 3.449430e-03	k: 539	n:170000
RELN   170000 perm   62 sec   (2730 perm/sec)   p_kst 3.170588e-03   p_cons 1.020118e-01   p_joint 3.429412e-03

Joint ci ratio: 1.581866e-01	ci left: 3.130998e-03	ci right 3.674079e-03	k: 611	n:180000
Cons ci ratio: 2.742906e-02	ci left: 1.005061e-01	ci right 1.033067e-01	k: 18342	n:180000
KS ci ratio: 1.627881e-01	ci left: 2.949671e-03	ci right 3.477640e-03	k: 577	n:180000
RELN   180000 perm   66 sec   (2709 perm/sec)   p_kst 3.205556e-03   p_cons 1.019000e-01   p_joint 3.394444e-03

Joint ci ratio: 1.399797e-01	ci left: 3.822713e-03	ci right 4.403104e-03	k: 780	n:190000
Cons ci ratio: 2.664012e-02	ci left: 1.009356e-01	ci right 1.036660e-01	k: 19436	n:190000
KS ci ratio: 1.579421e-01	ci left: 2.976300e-03	ci right 3.491673e-03	k: 613	n:190000
RELN   190000 perm   71 sec   (2687 perm/sec)   p_kst 3.226316e-03   p_cons 1.022947e-01   p_joint 4.105263e-03

Joint ci ratio: 1.382284e-01	ci left: 3.728084e-03	ci right 4.286443e-03	k: 800	n:200000
Cons ci ratio: 2.599460e-02	ci left: 1.007664e-01	ci right 1.034252e-01	k: 20418	n:200000
KS ci ratio: 1.539807e-01	ci left: 2.981241e-03	ci right 3.483328e-03	k: 645	n:200000
RELN   200000 perm   75 sec   (2665 perm/sec)   p_kst 3.225000e-03   p_cons 1.020900e-01   p_joint 4.000000e-03

Joint ci ratio: 1.260958e-01	ci left: 4.292000e-03	ci right 4.874186e-03	k: 961	n:210000
Cons ci ratio: 2.535099e-02	ci left: 1.009218e-01	ci right 1.035178e-01	k: 21465	n:210000
KS ci ratio: 1.500812e-01	ci left: 2.995025e-03	ci right 3.485512e-03	k: 679	n:210000
RELN   210000 perm   80 sec   (2641 perm/sec)   p_kst 3.233333e-03   p_cons 1.022143e-01   p_joint 4.576190e-03

Joint ci ratio: 1.268394e-01	ci left: 4.048459e-03	ci right 4.601090e-03	k: 950	n:220000
Cons ci ratio: 2.477561e-02	ci left: 1.008965e-01	ci right 1.034321e-01	k: 22475	n:220000
KS ci ratio: 1.464637e-01	ci left: 3.007701e-03	ci right 3.487353e-03	k: 713	n:220000
RELN   220000 perm   84 sec   (2615 perm/sec)   p_kst 3.240909e-03   p_cons 1.021591e-01   p_joint 4.318182e-03

Joint ci ratio: 1.278680e-01	ci left: 3.809269e-03	ci right 4.333785e-03	k: 935	n:230000
Cons ci ratio: 2.422967e-02	ci left: 1.009346e-01	ci right 1.034145e-01	k: 23499	n:230000
KS ci ratio: 1.430958e-01	ci left: 3.019404e-03	ci right 3.488904e-03	k: 747	n:230000
RELN   230000 perm   89 sec   (2593 perm/sec)   p_kst 3.247826e-03   p_cons 1.021696e-01   p_joint 4.065217e-03

Joint ci ratio: 1.350157e-01	ci left: 3.263630e-03	ci right 3.740151e-03	k: 839	n:240000
Cons ci ratio: 2.371184e-02	ci left: 1.010199e-01	ci right 1.034481e-01	k: 24535	n:240000
KS ci ratio: 1.397709e-01	ci left: 3.038290e-03	ci right 3.498835e-03	k: 783	n:240000
RELN   240000 perm   93 sec   (2570 perm/sec)   p_kst 3.262500e-03   p_cons 1.022292e-01   p_joint 3.495833e-03

Joint ci ratio: 1.327453e-01	ci left: 3.245197e-03	ci right 3.710431e-03	k: 868	n:250000
Cons ci ratio: 2.322585e-02	ci left: 1.010988e-01	ci right 1.034784e-01	k: 25571	n:250000
KS ci ratio: 1.370030e-01	ci left: 3.040327e-03	ci right 3.491310e-03	k: 815	n:250000
RELN   250000 perm   98 sec   (2545 perm/sec)   p_kst 3.260000e-03   p_cons 1.022840e-01   p_joint 3.472000e-03

Joint ci ratio: 1.322968e-01	ci left: 3.142683e-03	ci right 3.591577e-03	k: 874	n:260000
Cons ci ratio: 2.276237e-02	ci left: 1.012219e-01	ci right 1.035562e-01	k: 26620	n:260000
KS ci ratio: 1.348729e-01	ci left: 3.019988e-03	ci right 3.460431e-03	k: 841	n:260000
RELN   260000 perm   103 sec   (2524 perm/sec)   p_kst 3.234615e-03   p_cons 1.023846e-01   p_joint 3.361538e-03

Joint ci ratio: 1.303758e-01	ci left: 3.119417e-03	ci right 3.558017e-03	k: 900	n:270000
Cons ci ratio: 2.235935e-02	ci left: 1.010599e-01	ci right 1.033487e-01	k: 27594	n:270000
KS ci ratio: 1.327625e-01	ci left: 3.004788e-03	ci right 3.435615e-03	k: 868	n:270000
RELN   270000 perm   108 sec   (2503 perm/sec)   p_kst 3.214815e-03   p_cons 1.022000e-01   p_joint 3.333333e-03

Joint ci ratio: 1.279146e-01	ci left: 3.128972e-03	ci right 3.559981e-03	k: 935	n:280000
Cons ci ratio: 2.195304e-02	ci left: 1.011088e-01	ci right 1.033566e-01	k: 28624	n:280000
KS ci ratio: 1.298067e-01	ci left: 3.035642e-03	ci right 3.460457e-03	k: 908	n:280000
RELN   280000 perm   113 sec   (2483 perm/sec)   p_kst 3.242857e-03   p_cons 1.022286e-01   p_joint 3.339286e-03

Joint ci ratio: 1.273095e-01	ci left: 3.051112e-03	ci right 3.469257e-03	k: 944	n:290000
Cons ci ratio: 2.156204e-02	ci left: 1.012062e-01	ci right 1.034156e-01	k: 29669	n:290000
KS ci ratio: 1.280594e-01	ci left: 3.014389e-03	ci right 3.430119e-03	k: 933	n:290000
RELN   290000 perm   118 sec   (2463 perm/sec)   p_kst 3.217241e-03   p_cons 1.023069e-01   p_joint 3.255172e-03

Joint ci ratio: 1.273840e-01	ci left: 2.946171e-03	ci right 3.350188e-03	k: 943	n:300000
Cons ci ratio: 2.122703e-02	ci left: 1.009889e-01	ci right 1.031588e-01	k: 30621	n:300000
KS ci ratio: 1.256598e-01	ci left: 3.030103e-03	ci right 3.439586e-03	k: 969	n:300000
RELN   300000 perm   123 sec   (2442 perm/sec)   p_kst 3.230000e-03   p_cons 1.020700e-01   p_joint 3.143333e-03

Joint ci ratio: 1.254072e-01	ci left: 2.944848e-03	ci right 3.341950e-03	k: 973	n:310000
Cons ci ratio: 2.086377e-02	ci left: 1.011647e-01	ci right 1.033008e-01	k: 31691	n:310000
KS ci ratio: 1.235134e-01	ci left: 3.038618e-03	ci right 3.441725e-03	k: 1003	n:310000
RELN   310000 perm   128 sec   (2420 perm/sec)   p_kst 3.235484e-03   p_cons 1.022290e-01   p_joint 3.138710e-03

Joint ci ratio: 1.230290e-01	ci left: 2.967883e-03	ci right 3.359950e-03	k: 1011	n:320000
Cons ci ratio: 2.053634e-02	ci left: 1.011712e-01	ci right 1.032735e-01	k: 32710	n:320000
KS ci ratio: 1.210645e-01	ci left: 3.067870e-03	ci right 3.466210e-03	k: 1044	n:320000
RELN   320000 perm   133 sec   (2398 perm/sec)   p_kst 3.262500e-03   p_cons 1.022187e-01   p_joint 3.159375e-03

Joint ci ratio: 1.213037e-01	ci left: 2.963140e-03	ci right 3.348697e-03	k: 1040	n:330000
Cons ci ratio: 2.022521e-02	ci left: 1.011655e-01	ci right 1.032355e-01	k: 33725	n:330000
KS ci ratio: 1.196994e-01	ci left: 3.045439e-03	ci right 3.436092e-03	k: 1068	n:330000
RELN   330000 perm   139 sec   (2381 perm/sec)   p_kst 3.236364e-03   p_cons 1.021970e-01   p_joint 3.151515e-03

Joint ci ratio: 1.168345e-01	ci left: 3.107144e-03	ci right 3.495515e-03	k: 1121	n:340000
Cons ci ratio: 1.993674e-02	ci left: 1.010783e-01	ci right 1.031167e-01	k: 34712	n:340000
KS ci ratio: 1.178935e-01	ci left: 3.050042e-03	ci right 3.434972e-03	k: 1101	n:340000
RELN   340000 perm   144 sec   (2362 perm/sec)   p_kst 3.238235e-03   p_cons 1.020941e-01   p_joint 3.297059e-03

Joint ci ratio: 1.148049e-01	ci left: 3.129346e-03	ci right 3.513236e-03	k: 1161	n:350000
Cons ci ratio: 1.964802e-02	ci left: 1.011102e-01	ci right 1.031193e-01	k: 35739	n:350000
KS ci ratio: 1.157583e-01	ci left: 3.076620e-03	ci right 3.457391e-03	k: 1142	n:350000
RELN   350000 perm   149 sec   (2344 perm/sec)   p_kst 3.262857e-03   p_cons 1.021114e-01   p_joint 3.317143e-03

Joint ci ratio: 1.136388e-01	ci left: 3.107179e-03	ci right 3.484219e-03	k: 1185	n:360000
Cons ci ratio: 1.937061e-02	ci left: 1.011487e-01	ci right 1.031299e-01	k: 36769	n:360000
KS ci ratio: 1.143667e-01	ci left: 3.066697e-03	ci right 3.441369e-03	k: 1170	n:360000
RELN   360000 perm   155 sec   (2325 perm/sec)   p_kst 3.250000e-03   p_cons 1.021361e-01   p_joint 3.291667e-03

Joint ci ratio: 1.145190e-01	ci left: 2.975929e-03	ci right 3.340029e-03	k: 1167	n:370000
Cons ci ratio: 1.911872e-02	ci left: 1.010508e-01	ci right 1.030041e-01	k: 37749	n:370000
KS ci ratio: 1.124609e-01	ci left: 3.088857e-03	ci right 3.459531e-03	k: 1210	n:370000
RELN   370000 perm   160 sec   (2306 perm/sec)   p_kst 3.270270e-03   p_cons 1.020243e-01   p_joint 3.154054e-03

Joint ci ratio: 1.130289e-01	ci left: 2.976873e-03	ci right 3.336033e-03	k: 1198	n:380000
Cons ci ratio: 1.886555e-02	ci left: 1.010630e-01	ci right 1.029904e-01	k: 38769	n:380000
KS ci ratio: 1.110488e-01	ci left: 3.086869e-03	ci right 3.452349e-03	k: 1241	n:380000
RELN   380000 perm   166 sec   (2288 perm/sec)   p_kst 3.265789e-03   p_cons 1.020237e-01   p_joint 3.152632e-03

Joint ci ratio: 8.886939e-02	ci left: 4.743423e-03	ci right 5.187058e-03	k: 1935	n:390000
Cons ci ratio: 1.861255e-02	ci left: 1.011693e-01	ci right 1.030725e-01	k: 39826	n:390000
KS ci ratio: 1.075890e-01	ci left: 3.209744e-03	ci right 3.577183e-03	k: 1322	n:390000
RELN   390000 perm   172 sec   (2269 perm/sec)   p_kst 3.389744e-03   p_cons 1.021179e-01   p_joint 4.961538e-03

Joint ci ratio: 9.036442e-02	ci left: 4.470839e-03	ci right 4.896385e-03	k: 1872	n:400000
Cons ci ratio: 1.836521e-02	ci left: 1.013127e-01	ci right 1.031931e-01	k: 40900	n:400000
KS ci ratio: 1.062326e-01	ci left: 3.212228e-03	ci right 3.575025e-03	k: 1356	n:400000
RELN   400000 perm   178 sec   (2252 perm/sec)   p_kst 3.390000e-03   p_cons 1.022500e-01   p_joint 4.680000e-03

Joint ci ratio: 9.034538e-02	ci left: 4.364167e-03	ci right 4.779468e-03	k: 1873	n:410000
Cons ci ratio: 1.814794e-02	ci left: 1.012428e-01	ci right 1.030994e-01	k: 41889	n:410000
KS ci ratio: 1.048884e-01	ci left: 3.216993e-03	ci right 3.575448e-03	k: 1391	n:410000
RELN   410000 perm   183 sec   (2235 perm/sec)   p_kst 3.392683e-03   p_cons 1.021683e-01   p_joint 4.568293e-03

Joint ci ratio: 8.937351e-02	ci left: 4.355683e-03	ci right 4.765484e-03	k: 1914	n:420000
Cons ci ratio: 1.793681e-02	ci left: 1.011906e-01	ci right 1.030244e-01	k: 42884	n:420000
KS ci ratio: 1.038132e-01	ci left: 3.207643e-03	ci right 3.561168e-03	k: 1420	n:420000
RELN   420000 perm   189 sec   (2217 perm/sec)   p_kst 3.380952e-03   p_cons 1.021048e-01   p_joint 4.557143e-03

Joint ci ratio: 8.834164e-02	ci left: 4.356713e-03	ci right 4.761635e-03	k: 1959	n:430000
Cons ci ratio: 1.773648e-02	ci left: 1.011039e-01	ci right 1.029154e-01	k: 43863	n:430000
KS ci ratio: 1.027349e-01	ci left: 3.201011e-03	ci right 3.549920e-03	k: 1450	n:430000
RELN   430000 perm   195 sec   (2200 perm/sec)   p_kst 3.372093e-03   p_cons 1.020070e-01   p_joint 4.555814e-03

Joint ci ratio: 8.785235e-02	ci left: 4.306591e-03	ci right 4.704523e-03	k: 1981	n:440000
Cons ci ratio: 1.752249e-02	ci left: 1.012317e-01	ci right 1.030235e-01	k: 44935	n:440000
KS ci ratio: 1.017239e-01	ci left: 3.192484e-03	ci right 3.536834e-03	k: 1479	n:440000
RELN   440000 perm   202 sec   (2181 perm/sec)   p_kst 3.361364e-03   p_cons 1.021250e-01   p_joint 4.502273e-03

Joint ci ratio: 8.728359e-02	ci left: 4.267397e-03	ci right 4.659025e-03	k: 2007	n:450000
Cons ci ratio: 1.732110e-02	ci left: 1.013009e-01	ci right 1.030731e-01	k: 45983	n:450000
KS ci ratio: 1.006085e-01	ci left: 3.193018e-03	ci right 3.533426e-03	k: 1512	n:450000
RELN   450000 perm   208 sec   (2164 perm/sec)   p_kst 3.360000e-03   p_cons 1.021844e-01   p_joint 4.460000e-03

Joint ci ratio: 8.752897e-02	ci left: 4.151227e-03	ci right 4.533319e-03	k: 1996	n:460000
Cons ci ratio: 1.713156e-02	ci left: 1.013131e-01	ci right 1.030659e-01	k: 47006	n:460000
KS ci ratio: 9.959370e-02	ci left: 3.189308e-03	ci right 3.525691e-03	k: 1543	n:460000
RELN   460000 perm   214 sec   (2147 perm/sec)   p_kst 3.354348e-03   p_cons 1.021870e-01   p_joint 4.339130e-03

Outputting figure to mutsig2_images.part000000000145/RELN.33_10643_460000_0.0033543_0.10219_0.0043391.png
                gene_name: RELN
               theta_stop: 0.100 
                    nperm: 460000 
                     p_ks: 0.0034 
        ci_ks_bounds_left: 0.0032 
       ci_ks_bounds_right: 0.0035 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.0043 
     ci_joint_bounds_left: 0.0042 
    ci_joint_bounds_right: 0.0045 

Current progress: 2 percent done.
REV3L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.289403e-01	ci left: 7.912021e-02	ci right 9.012318e-02	k: 845	n:10000
Cons ci ratio: 4.022656e-02	ci left: 4.771585e-01	ci right 4.968491e-01	k: 4870	n:10000
KS ci ratio: 1.805768e-01	ci left: 4.092429e-02	ci right 4.914339e-02	k: 449	n:10000
REV3L   10000 perm   3 sec   (3696 perm/sec)   p_kst 4.490000e-02   p_cons 4.870000e-01   p_joint 8.450000e-02

Joint ci ratio: 1.072598e-01	ci left: 5.923278e-02	ci right 6.599506e-02	k: 1251	n:20000
Cons ci ratio: 2.818044e-02	ci left: 4.847481e-01	ci right 4.986543e-01	k: 9834	n:20000
KS ci ratio: 1.289706e-01	ci left: 4.129596e-02	ci right 4.703752e-02	k: 882	n:20000
REV3L   20000 perm   6 sec   (3439 perm/sec)   p_kst 4.410000e-02   p_cons 4.917000e-01   p_joint 6.255000e-02

Joint ci ratio: 8.676748e-02	ci left: 6.092949e-02	ci right 6.648870e-02	k: 1910	n:30000
Cons ci ratio: 2.310977e-02	ci left: 4.838612e-01	ci right 4.952075e-01	k: 14686	n:30000
KS ci ratio: 1.105850e-01	ci left: 3.797276e-02	ci right 4.245017e-02	k: 1205	n:30000
REV3L   30000 perm   9 sec   (3299 perm/sec)   p_kst 4.016667e-02   p_cons 4.895333e-01   p_joint 6.366667e-02

Joint ci ratio: 7.641628e-02	ci left: 5.936145e-02	ci right 6.410242e-02	k: 2468	n:40000
Cons ci ratio: 2.004831e-02	ci left: 4.837648e-01	ci right 4.935868e-01	k: 19547	n:40000
KS ci ratio: 9.176932e-02	ci left: 4.161954e-02	ci right 4.564705e-02	k: 1744	n:40000
REV3L   40000 perm   12 sec   (3207 perm/sec)   p_kst 4.360000e-02   p_cons 4.886750e-01   p_joint 6.170000e-02

Outputting figure to mutsig2_images.part000000000145/REV3L.22_9521_40000_0.0436_0.48868_0.0617.png
                gene_name: REV3L
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.064 

Current progress: 4 percent done.
RET
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.745367e-02	ci left: 5.128549e-01	ci right 5.325319e-01	k: 5227	n:10000
Cons ci ratio: 5.822401e-02	ci left: 3.027268e-01	ci right 3.209830e-01	k: 3118	n:10000
KS ci ratio: 2.780176e-02	ci left: 6.559541e-01	ci right 6.745495e-01	k: 6653	n:10000
RET   10000 perm   2 sec   (5535 perm/sec)   p_kst 6.653000e-01   p_cons 3.118000e-01   p_joint 5.227000e-01

Outputting figure to mutsig2_images.part000000000145/RET.8_3457_10000_0.6653_0.3118_0.5227.png
                gene_name: RET
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 6 percent done.
RC3H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.560377e-02	ci left: 5.380825e-01	ci right 5.576896e-01	k: 5479	n:10000
Cons ci ratio: 5.949587e-02	ci left: 2.936048e-01	ci right 3.117103e-01	k: 3026	n:10000
KS ci ratio: 4.118018e-02	ci left: 4.654705e-01	ci right 4.851439e-01	k: 4753	n:10000
RC3H1   10000 perm   2 sec   (5852 perm/sec)   p_kst 4.753000e-01   p_cons 3.026000e-01   p_joint 5.479000e-01

Outputting figure to mutsig2_images.part000000000145/RC3H1.7_3478_10000_0.4753_0.3026_0.5479.png
                gene_name: RC3H1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 8 percent done.
REV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.279696e-02	ci left: 1.754646e-01	ci right 1.907205e-01	k: 1830	n:10000
Cons ci ratio: 1.051078e-01	ci left: 1.156461e-01	ci right 1.285750e-01	k: 1220	n:10000
KS ci ratio: 3.993788e-02	ci left: 4.807559e-01	ci right 5.004496e-01	k: 4906	n:10000
REV1   10000 perm   2 sec   (5190 perm/sec)   p_kst 4.906000e-01   p_cons 1.220000e-01   p_joint 1.830000e-01

Joint ci ratio: 4.389815e-02	ci left: 2.787504e-01	ci right 2.913121e-01	k: 5700	n:20000
Cons ci ratio: 7.360460e-02	ci left: 1.196098e-01	ci right 1.287997e-01	k: 2483	n:20000
KS ci ratio: 2.873570e-02	ci left: 4.750030e-01	ci right 4.889022e-01	k: 9639	n:20000
REV1   20000 perm   4 sec   (4800 perm/sec)   p_kst 4.819500e-01   p_cons 1.241500e-01   p_joint 2.850000e-01

Outputting figure to mutsig2_images.part000000000145/REV1.7_3844_20000_0.48195_0.12415_0.285.png
                gene_name: REV1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 10 percent done.
RCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.463647e-02	ci left: 2.080667e-01	ci right 2.242990e-01	k: 2161	n:10000
Cons ci ratio: 1.241134e-01	ci left: 8.504395e-02	ci right 9.639578e-02	k: 906	n:10000
KS ci ratio: 4.565297e-02	ci left: 4.145864e-01	ci right 4.340577e-01	k: 4243	n:10000
RCC2   10000 perm   2 sec   (6495 perm/sec)   p_kst 4.243000e-01   p_cons 9.060000e-02   p_joint 2.161000e-01

Joint ci ratio: 5.516082e-02	ci left: 1.960090e-01	ci right 2.071779e-01	k: 4031	n:20000
Cons ci ratio: 8.857097e-02	ci left: 8.523565e-02	ci right 9.318425e-02	k: 1783	n:20000
KS ci ratio: 3.141121e-02	ci left: 4.308589e-01	ci right 4.446592e-01	k: 8755	n:20000
RCC2   20000 perm   3 sec   (5838 perm/sec)   p_kst 4.377500e-01   p_cons 8.915000e-02   p_joint 2.015500e-01

Outputting figure to mutsig2_images.part000000000145/RCC2.6_1617_20000_0.43775_0.08915_0.20155.png
                gene_name: RCC2
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 12 percent done.
RECQL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.564880e-02	ci left: 6.911127e-01	ci right 7.091706e-01	k: 7002	n:10000
Cons ci ratio: 6.265710e-02	ci left: 2.724030e-01	ci right 2.901245e-01	k: 2812	n:10000
KS ci ratio: 1.304147e-02	ci left: 8.943634e-01	ci right 9.062022e-01	k: 9004	n:10000
RECQL5   10000 perm   2 sec   (5909 perm/sec)   p_kst 9.004000e-01   p_cons 2.812000e-01   p_joint 7.002000e-01

Outputting figure to mutsig2_images.part000000000145/RECQL5.6_3139_10000_0.9004_0.2812_0.7002.png
                gene_name: RECQL5
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 13 percent done.
RBPJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.074508e-02	ci left: 2.849825e-01	ci right 3.029377e-01	k: 2939	n:10000
Cons ci ratio: 1.509149e-01	ci left: 5.841227e-02	ci right 6.804410e-02	k: 631	n:10000
KS ci ratio: 2.587498e-02	ci left: 6.873824e-01	ci right 7.055030e-01	k: 6965	n:10000
RBPJ   10000 perm   1 sec   (6868 perm/sec)   p_kst 6.965000e-01   p_cons 6.310000e-02   p_joint 2.939000e-01

Joint ci ratio: 5.902111e-02	ci left: 1.753397e-01	ci right 1.860533e-01	k: 3613	n:20000
Cons ci ratio: 1.109456e-01	ci left: 5.548160e-02	ci right 6.204742e-02	k: 1174	n:20000
KS ci ratio: 1.841815e-02	ci left: 6.872588e-01	ci right 7.000849e-01	k: 13874	n:20000
RBPJ   20000 perm   3 sec   (6112 perm/sec)   p_kst 6.937000e-01   p_cons 5.870000e-02   p_joint 1.806500e-01

Joint ci ratio: 3.985521e-02	ci left: 2.389496e-01	ci right 2.487001e-01	k: 7314	n:30000
Cons ci ratio: 9.060103e-02	ci left: 5.606623e-02	ci right 6.141962e-02	k: 1761	n:30000
KS ci ratio: 1.503850e-02	ci left: 6.884486e-01	ci right 6.989138e-01	k: 20811	n:30000
RBPJ   30000 perm   5 sec   (5848 perm/sec)   p_kst 6.937000e-01   p_cons 5.870000e-02   p_joint 2.438000e-01

Outputting figure to mutsig2_images.part000000000145/RBPJ.5_1610_30000_0.6937_0.0587_0.2438.png
                gene_name: RBPJ
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 15 percent done.
RCOR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.453735e-02	ci left: 2.607228e-01	ci right 2.782117e-01	k: 2694	n:10000
Cons ci ratio: 4.882037e-02	ci left: 3.823146e-01	ci right 4.015484e-01	k: 3919	n:10000
KS ci ratio: 8.324248e-02	ci left: 1.738909e-01	ci right 1.890951e-01	k: 1814	n:10000
RCOR3   10000 perm   2 sec   (6203 perm/sec)   p_kst 1.814000e-01   p_cons 3.919000e-01   p_joint 2.694000e-01

Outputting figure to mutsig2_images.part000000000145/RCOR3.5_1743_10000_0.1814_0.3919_0.2694.png
                gene_name: RCOR3
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 17 percent done.
RCSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.990708e-02	ci left: 2.907303e-01	ci right 3.087865e-01	k: 2997	n:10000
Cons ci ratio: 1.411493e-01	ci left: 6.652534e-02	ci right 7.672591e-02	k: 715	n:10000
KS ci ratio: 3.163782e-02	ci left: 5.958412e-01	ci right 6.150973e-01	k: 6055	n:10000
RCSD1   10000 perm   1 sec   (6729 perm/sec)   p_kst 6.055000e-01   p_cons 7.150000e-02   p_joint 2.997000e-01

Joint ci ratio: 5.698118e-02	ci left: 1.858691e-01	ci right 1.968208e-01	k: 3826	n:20000
Cons ci ratio: 1.008374e-01	ci left: 6.669691e-02	ci right 7.382864e-02	k: 1404	n:20000
KS ci ratio: 2.287923e-02	ci left: 5.879077e-01	ci right 6.015648e-01	k: 11895	n:20000
RCSD1   20000 perm   3 sec   (6046 perm/sec)   p_kst 5.947500e-01   p_cons 7.020000e-02   p_joint 1.913000e-01

Joint ci ratio: 4.696830e-02	ci left: 1.839888e-01	ci right 1.928716e-01	k: 5652	n:30000
Cons ci ratio: 8.253425e-02	ci left: 6.703978e-02	ci right 7.284384e-02	k: 2097	n:30000
KS ci ratio: 1.865727e-02	ci left: 5.897869e-01	ci right 6.009279e-01	k: 17861	n:30000
RCSD1   30000 perm   5 sec   (5748 perm/sec)   p_kst 5.953667e-01   p_cons 6.990000e-02   p_joint 1.884000e-01

Outputting figure to mutsig2_images.part000000000145/RCSD1.5_1279_30000_0.59537_0.0699_0.1884.png
                gene_name: RCSD1
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 19 percent done.
RECK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.435169e-02	ci left: 1.700559e-01	ci right 1.851324e-01	k: 1775	n:10000
Cons ci ratio: 2.043162e-01	ci left: 3.186407e-02	ci right 3.920972e-02	k: 354	n:10000
KS ci ratio: 1.794921e-02	ci left: 8.191366e-01	ci right 8.340726e-01	k: 8267	n:10000
RECK   10000 perm   2 sec   (6071 perm/sec)   p_kst 8.267000e-01   p_cons 3.540000e-02   p_joint 1.775000e-01

Joint ci ratio: 6.430145e-02	ci left: 1.516378e-01	ci right 1.617622e-01	k: 3133	n:20000
Cons ci ratio: 1.378673e-01	ci left: 3.616580e-02	ci right 4.156932e-02	k: 776	n:20000
KS ci ratio: 1.211825e-02	ci left: 8.343891e-01	ci right 8.446120e-01	k: 16791	n:20000
RECK   20000 perm   4 sec   (5464 perm/sec)   p_kst 8.395500e-01   p_cons 3.880000e-02   p_joint 1.566500e-01

Joint ci ratio: 4.950549e-02	ci left: 1.685699e-01	ci right 1.771602e-01	k: 5185	n:30000
Cons ci ratio: 1.130492e-01	ci left: 3.635095e-02	ci right 4.073899e-02	k: 1155	n:30000
KS ci ratio: 9.921865e-03	ci left: 8.345896e-01	ci right 8.429447e-01	k: 25164	n:30000
RECK   30000 perm   6 sec   (5227 perm/sec)   p_kst 8.388000e-01   p_cons 3.850000e-02   p_joint 1.728333e-01

Joint ci ratio: 4.271884e-02	ci left: 1.701721e-01	ci right 1.776253e-01	k: 6955	n:40000
Cons ci ratio: 9.834715e-02	ci left: 3.631826e-02	ci right 4.009916e-02	k: 1527	n:40000
KS ci ratio: 8.664684e-03	ci left: 8.328641e-01	ci right 8.401369e-01	k: 33461	n:40000
RECK   40000 perm   8 sec   (4969 perm/sec)   p_kst 8.365250e-01   p_cons 3.817500e-02   p_joint 1.738750e-01

Outputting figure to mutsig2_images.part000000000145/RECK.5_3000_40000_0.83652_0.038175_0.17388.png
                gene_name: RECK
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 21 percent done.
REG1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.331365e-02	ci left: 7.299703e-01	ci right 7.472905e-01	k: 7387	n:10000
Cons ci ratio: 6.224134e-02	ci left: 2.750767e-01	ci right 2.928493e-01	k: 2839	n:10000
KS ci ratio: 2.609546e-02	ci left: 6.837536e-01	ci right 7.019339e-01	k: 6929	n:10000
REG1A   10000 perm   1 sec   (7464 perm/sec)   p_kst 6.929000e-01   p_cons 2.839000e-01   p_joint 7.387000e-01

Outputting figure to mutsig2_images.part000000000145/REG1A.5_521_10000_0.6929_0.2839_0.7387.png
                gene_name: REG1A
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 23 percent done.
REN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.314164e-01	ci left: 7.630693e-02	ci right 8.713821e-02	k: 816	n:10000
Cons ci ratio: 2.946757e-02	ci left: 6.293965e-01	ci right 6.483225e-01	k: 6389	n:10000
KS ci ratio: 2.162892e-01	ci left: 2.835310e-02	ci right 3.532314e-02	k: 317	n:10000
REN   10000 perm   1 sec   (7193 perm/sec)   p_kst 3.170000e-02   p_cons 6.389000e-01   p_joint 8.160000e-02

Joint ci ratio: 9.734244e-02	ci left: 7.133775e-02	ci right 7.868638e-02	k: 1499	n:20000
Cons ci ratio: 2.006488e-02	ci left: 6.495197e-01	ci right 6.627348e-01	k: 13123	n:20000
KS ci ratio: 1.519588e-01	ci left: 2.974850e-02	ci right 3.468873e-02	k: 643	n:20000
REN   20000 perm   3 sec   (6388 perm/sec)   p_kst 3.215000e-02   p_cons 6.561500e-01   p_joint 7.495000e-02

Joint ci ratio: 6.962333e-02	ci left: 9.222965e-02	ci right 9.891558e-02	k: 2866	n:30000
Cons ci ratio: 1.638494e-02	ci left: 6.506933e-01	ci right 6.614765e-01	k: 19683	n:30000
KS ci ratio: 1.283959e-01	ci left: 2.819549e-02	ci right 3.209621e-02	k: 903	n:30000
REN   30000 perm   5 sec   (6076 perm/sec)   p_kst 3.010000e-02   p_cons 6.561000e-01   p_joint 9.553333e-02

Joint ci ratio: 7.012954e-02	ci left: 6.990359e-02	ci right 7.500869e-02	k: 2897	n:40000
Cons ci ratio: 1.415373e-02	ci left: 6.525749e-01	ci right 6.619022e-01	k: 26290	n:40000
KS ci ratio: 1.106905e-01	ci left: 2.871485e-02	ci right 3.210378e-02	k: 1215	n:40000
REN   40000 perm   7 sec   (5847 perm/sec)   p_kst 3.037500e-02   p_cons 6.572500e-01   p_joint 7.242500e-02

Joint ci ratio: 5.952207e-02	ci left: 7.743921e-02	ci right 8.220970e-02	k: 3990	n:50000
Cons ci ratio: 1.270648e-02	ci left: 6.513960e-01	ci right 6.597459e-01	k: 32779	n:50000
KS ci ratio: 1.002009e-01	ci left: 2.820987e-02	ci right 3.120506e-02	k: 1484	n:50000
REN   50000 perm   9 sec   (5668 perm/sec)   p_kst 2.968000e-02   p_cons 6.555800e-01   p_joint 7.980000e-02

Joint ci ratio: 5.509728e-02	ci left: 7.565241e-02	ci right 7.995520e-02	k: 4667	n:60000
Cons ci ratio: 1.159205e-02	ci left: 6.520495e-01	ci right 6.596688e-01	k: 39352	n:60000
KS ci ratio: 9.155012e-02	ci left: 2.829094e-02	ci right 3.102147e-02	k: 1778	n:60000
REN   60000 perm   11 sec   (5521 perm/sec)   p_kst 2.963333e-02   p_cons 6.558667e-01   p_joint 7.778333e-02

Outputting figure to mutsig2_images.part000000000145/REN.5_1261_60000_0.029633_0.65587_0.077783.png
                gene_name: REN
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.080 

Current progress: 25 percent done.
REPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.020604e-02	ci left: 6.178376e-01	ci right 6.368881e-01	k: 6274	n:10000
Cons ci ratio: 8.710826e-02	ci left: 1.610145e-01	ci right 1.757792e-01	k: 1683	n:10000
KS ci ratio: 2.006502e-02	ci left: 7.843160e-01	ci right 8.003134e-01	k: 7924	n:10000
REPS1   10000 perm   2 sec   (6500 perm/sec)   p_kst 7.924000e-01   p_cons 1.683000e-01   p_joint 6.274000e-01

Outputting figure to mutsig2_images.part000000000145/REPS1.5_2471_10000_0.7924_0.1683_0.6274.png
                gene_name: REPS1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 27 percent done.
REST
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.917331e-02	ci left: 2.958849e-01	ci right 3.140289e-01	k: 3049	n:10000
Cons ci ratio: 1.099875e-01	ci left: 1.064680e-01	ci right 1.189587e-01	k: 1126	n:10000
KS ci ratio: 3.461602e-02	ci left: 5.520085e-01	ci right 5.715555e-01	k: 5618	n:10000
REST   10000 perm   2 sec   (5651 perm/sec)   p_kst 5.618000e-01   p_cons 1.126000e-01   p_joint 3.049000e-01

Joint ci ratio: 4.006535e-02	ci left: 3.171668e-01	ci right 3.301845e-01	k: 6473	n:20000
Cons ci ratio: 8.109712e-02	ci left: 1.003422e-01	ci right 1.088731e-01	k: 2091	n:20000
KS ci ratio: 2.434976e-02	ci left: 5.574943e-01	ci right 5.712870e-01	k: 11288	n:20000
REST   20000 perm   4 sec   (5133 perm/sec)   p_kst 5.644000e-01   p_cons 1.045500e-01   p_joint 3.236500e-01

Outputting figure to mutsig2_images.part000000000145/REST.5_3306_20000_0.5644_0.10455_0.32365.png
                gene_name: REST
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 29 percent done.
RBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.151886e-02	ci left: 1.800887e-01	ci right 1.954937e-01	k: 1877	n:10000
Cons ci ratio: 1.346742e-01	ci left: 7.281740e-02	ci right 8.342992e-02	k: 780	n:10000
KS ci ratio: 3.524595e-02	ci left: 5.430910e-01	ci right 5.626782e-01	k: 5529	n:10000
RBP3   10000 perm   2 sec   (5334 perm/sec)   p_kst 5.529000e-01   p_cons 7.800000e-02   p_joint 1.877000e-01

Joint ci ratio: 6.950910e-02	ci left: 1.324104e-01	ci right 1.419953e-01	k: 2743	n:20000
Cons ci ratio: 9.640759e-02	ci left: 7.265752e-02	ci right 8.006620e-02	k: 1526	n:20000
KS ci ratio: 2.513922e-02	ci left: 5.417217e-01	ci right 5.555641e-01	k: 10973	n:20000
RBP3   20000 perm   4 sec   (4986 perm/sec)   p_kst 5.486500e-01   p_cons 7.630000e-02   p_joint 1.371500e-01

Outputting figure to mutsig2_images.part000000000145/RBP3.4_3760_20000_0.54865_0.0763_0.13715.png
                gene_name: RBP3
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 31 percent done.
RECQL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.686731e-03	ci left: 9.835003e-01	ci right 9.882104e-01	k: 9860	n:10000
KS ci ratio: 1.183680e-02	ci left: 9.109059e-01	ci right 9.218501e-01	k: 9165	n:10000
RECQL   10000 perm   2 sec   (6544 perm/sec)   p_kst 9.165000e-01   p_cons 9.860000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RECQL.4_2006_10000_0.9165_0.986_1.png
                gene_name: RECQL
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
REEP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.334826e-02	ci left: 1.428581e-01	ci right 1.569465e-01	k: 1498	n:10000
Cons ci ratio: 7.521376e-02	ci left: 2.055028e-01	ci right 2.216644e-01	k: 2135	n:10000
KS ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
REEP2   10000 perm   1 sec   (7178 perm/sec)   p_kst 8.370000e-02   p_cons 2.135000e-01   p_joint 1.498000e-01

Joint ci ratio: 6.810596e-02	ci left: 1.372391e-01	ci right 1.469652e-01	k: 2841	n:20000
Cons ci ratio: 5.316894e-02	ci left: 2.079864e-01	ci right 2.193970e-01	k: 4273	n:20000
KS ci ratio: 9.108822e-02	ci left: 8.087673e-02	ci right 8.864449e-02	k: 1694	n:20000
REEP2   20000 perm   3 sec   (6318 perm/sec)   p_kst 8.470000e-02   p_cons 2.136500e-01   p_joint 1.420500e-01

Outputting figure to mutsig2_images.part000000000145/REEP2.4_791_20000_0.0847_0.21365_0.14205.png
                gene_name: REEP2
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 35 percent done.
RBPJL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.476548e-02	ci left: 1.391331e-01	ci right 1.530738e-01	k: 1460	n:10000
Cons ci ratio: 7.383106e-02	ci left: 2.117161e-01	ci right 2.280474e-01	k: 2198	n:10000
KS ci ratio: 1.025873e-01	ci left: 1.208265e-01	ci right 1.339914e-01	k: 1273	n:10000
RBPJL   10000 perm   2 sec   (6482 perm/sec)   p_kst 1.273000e-01   p_cons 2.198000e-01   p_joint 1.460000e-01

Joint ci ratio: 8.726152e-02	ci left: 8.763679e-02	ci right 9.568239e-02	k: 1832	n:20000
Cons ci ratio: 5.147250e-02	ci left: 2.189803e-01	ci right 2.305998e-01	k: 4495	n:20000
KS ci ratio: 7.280364e-02	ci left: 1.219718e-01	ci right 1.312370e-01	k: 2531	n:20000
RBPJL   20000 perm   3 sec   (5953 perm/sec)   p_kst 1.265500e-01   p_cons 2.247500e-01   p_joint 9.160000e-02

Outputting figure to mutsig2_images.part000000000145/RBPJL.3_1602_20000_0.12655_0.22475_0.0916.png
                gene_name: RBPJL
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.096 

Current progress: 37 percent done.
RC3H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.053356e-02	ci left: 7.765116e-01	ci right 7.927222e-01	k: 7847	n:10000
Cons ci ratio: 3.884302e-02	ci left: 4.946505e-01	ci right 5.143469e-01	k: 5045	n:10000
KS ci ratio: 2.550841e-02	ci left: 6.934318e-01	ci right 7.114501e-01	k: 7025	n:10000
RC3H2   10000 perm   2 sec   (5925 perm/sec)   p_kst 7.025000e-01   p_cons 5.045000e-01   p_joint 7.847000e-01

Outputting figure to mutsig2_images.part000000000145/RC3H2.3_3734_10000_0.7025_0.5045_0.7847.png
                gene_name: RC3H2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 38 percent done.
RCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.190635e-02	ci left: 2.772555e-01	ci right 2.950692e-01	k: 2861	n:10000
Cons ci ratio: 7.568707e-02	ci left: 2.034324e-01	ci right 2.195360e-01	k: 2114	n:10000
KS ci ratio: 9.854893e-02	ci left: 1.298276e-01	ci right 1.433848e-01	k: 1365	n:10000
RCC1   10000 perm   1 sec   (7836 perm/sec)   p_kst 1.365000e-01   p_cons 2.114000e-01   p_joint 2.861000e-01

Outputting figure to mutsig2_images.part000000000145/RCC1.3_1399_10000_0.1365_0.2114_0.2861.png
                gene_name: RCC1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 40 percent done.
RCVRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.750059e-03	ci left: 9.936409e-01	ci right 9.964588e-01	k: 9952	n:10000
KS ci ratio: 2.272225e-02	ci left: 7.398746e-01	ci right 7.569805e-01	k: 7485	n:10000
RCVRN   10000 perm   1 sec   (7646 perm/sec)   p_kst 7.485000e-01   p_cons 9.952000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RCVRN.3_615_10000_0.7485_0.9952_1.png
                gene_name: RCVRN
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
RDH10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.678782e-01	ci left: 4.734532e-02	ci right 5.611815e-02	k: 516	n:10000
Cons ci ratio: 2.855121e-01	ci left: 1.585693e-02	ci right 2.122875e-02	k: 184	n:10000
KS ci ratio: 6.929979e-02	ci left: 2.339280e-01	ci right 2.508223e-01	k: 2423	n:10000
RDH10   10000 perm   1 sec   (7982 perm/sec)   p_kst 2.423000e-01   p_cons 1.840000e-02   p_joint 5.160000e-02

Joint ci ratio: 1.514734e-01	ci left: 2.994113e-02	ci right 3.489604e-02	k: 647	n:20000
Cons ci ratio: 2.499297e-01	ci left: 1.063101e-02	ci right 1.371326e-02	k: 242	n:20000
KS ci ratio: 4.905622e-02	ci left: 2.360275e-01	ci right 2.479476e-01	k: 4839	n:20000
RDH10   20000 perm   3 sec   (6980 perm/sec)   p_kst 2.419500e-01   p_cons 1.210000e-02   p_joint 3.235000e-02

Joint ci ratio: 1.097345e-01	ci left: 3.855687e-02	ci right 4.306594e-02	k: 1223	n:30000
Cons ci ratio: 2.019752e-01	ci left: 1.114681e-02	ci right 1.368226e-02	k: 371	n:30000
KS ci ratio: 4.012727e-02	ci left: 2.364668e-01	ci right 2.461833e-01	k: 7239	n:30000
RDH10   30000 perm   5 sec   (6585 perm/sec)   p_kst 2.413000e-01   p_cons 1.236667e-02   p_joint 4.076667e-02

Joint ci ratio: 1.245242e-01	ci left: 2.266770e-02	ci right 2.570191e-02	k: 966	n:40000
Cons ci ratio: 1.728118e-01	ci left: 1.160171e-02	ci right 1.381988e-02	k: 507	n:40000
KS ci ratio: 3.464565e-02	ci left: 2.382316e-01	ci right 2.466558e-01	k: 9697	n:40000
RDH10   40000 perm   6 sec   (6336 perm/sec)   p_kst 2.424250e-01   p_cons 1.267500e-02   p_joint 2.415000e-02

Joint ci ratio: 8.774984e-02	ci left: 3.669336e-02	ci right 4.008050e-02	k: 1918	n:50000
Cons ci ratio: 1.543220e-01	ci left: 1.175611e-02	ci right 1.374106e-02	k: 636	n:50000
KS ci ratio: 3.098551e-02	ci left: 2.387085e-01	ci right 2.462414e-01	k: 12123	n:50000
RDH10   50000 perm   8 sec   (6143 perm/sec)   p_kst 2.424600e-01   p_cons 1.272000e-02   p_joint 3.836000e-02

Joint ci ratio: 8.478646e-02	ci left: 3.293959e-02	ci right 3.587234e-02	k: 2063	n:60000
Cons ci ratio: 1.413830e-01	ci left: 1.175498e-02	ci right 1.355929e-02	k: 758	n:60000
KS ci ratio: 2.829066e-02	ci left: 2.389753e-01	ci right 2.458497e-01	k: 14544	n:60000
RDH10   60000 perm   10 sec   (5976 perm/sec)   p_kst 2.424000e-01   p_cons 1.263333e-02   p_joint 3.438333e-02

Joint ci ratio: 8.867750e-02	ci left: 2.595155e-02	ci right 2.837357e-02	k: 1900	n:70000
Cons ci ratio: 1.312335e-01	ci left: 1.175918e-02	ci right 1.342445e-02	k: 880	n:70000
KS ci ratio: 2.617596e-02	ci left: 2.394566e-01	ci right 2.458219e-01	k: 16984	n:70000
RDH10   70000 perm   12 sec   (5823 perm/sec)   p_kst 2.426286e-01   p_cons 1.257143e-02   p_joint 2.714286e-02

Joint ci ratio: 7.982404e-02	ci left: 2.809318e-02	ci right 3.044113e-02	k: 2340	n:80000
Cons ci ratio: 1.227490e-01	ci left: 1.181430e-02	ci right 1.337134e-02	k: 1006	n:80000
KS ci ratio: 2.446410e-02	ci left: 2.399813e-01	ci right 2.459374e-01	k: 19436	n:80000
RDH10   80000 perm   14 sec   (5691 perm/sec)   p_kst 2.429500e-01   p_cons 1.257500e-02   p_joint 2.925000e-02

Joint ci ratio: 4.796785e-02	ci left: 6.741841e-02	ci right 7.074276e-02	k: 6216	n:90000
Cons ci ratio: 9.462614e-02	ci left: 1.782497e-02	ci right 1.960624e-02	k: 1683	n:90000
KS ci ratio: 2.306402e-02	ci left: 2.401675e-01	ci right 2.457824e-01	k: 21867	n:90000
RDH10   90000 perm   16 sec   (5562 perm/sec)   p_kst 2.429667e-01   p_cons 1.870000e-02   p_joint 6.906667e-02

Outputting figure to mutsig2_images.part000000000145/RDH10.3_1050_90000_0.24297_0.0187_0.069067.png
                gene_name: RDH10
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.071 

Current progress: 44 percent done.
RDH12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.205164e-02	ci left: 1.463885e-01	ci right 1.606140e-01	k: 1534	n:10000
Cons ci ratio: 6.771470e-02	ci left: 2.424265e-01	ci right 2.595188e-01	k: 2509	n:10000
KS ci ratio: 1.172700e-01	ci left: 9.457666e-02	ci right 1.064572e-01	k: 1004	n:10000
RDH12   10000 perm   1 sec   (7604 perm/sec)   p_kst 1.004000e-01   p_cons 2.509000e-01   p_joint 1.534000e-01

Joint ci ratio: 5.315312e-02	ci left: 2.080854e-01	ci right 2.194980e-01	k: 4275	n:20000
Cons ci ratio: 4.770430e-02	ci left: 2.463415e-01	ci right 2.584306e-01	k: 5047	n:20000
KS ci ratio: 8.387830e-02	ci left: 9.430561e-02	ci right 1.026115e-01	k: 1968	n:20000
RDH12   20000 perm   3 sec   (6707 perm/sec)   p_kst 9.840000e-02   p_cons 2.523500e-01   p_joint 2.137500e-01

Outputting figure to mutsig2_images.part000000000145/RDH12.3_979_20000_0.0984_0.25235_0.21375.png
                gene_name: RDH12
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 46 percent done.
RDH16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.844739e-01	ci left: 3.920326e-02	ci right 4.726556e-02	k: 431	n:10000
Cons ci ratio: 2.878995e-01	ci left: 1.557819e-02	ci right 2.090773e-02	k: 181	n:10000
KS ci ratio: 4.602876e-01	ci left: 5.549202e-03	ci right 8.947365e-03	k: 71	n:10000
RDH16   10000 perm   1 sec   (7315 perm/sec)   p_kst 7.100000e-03   p_cons 1.810000e-02   p_joint 4.310000e-02

Joint ci ratio: 2.483822e-01	ci left: 1.077173e-02	ci right 1.387247e-02	k: 245	n:20000
Cons ci ratio: 1.978447e-01	ci left: 1.734330e-02	ci right 2.119826e-02	k: 384	n:20000
KS ci ratio: 3.567614e-01	ci left: 4.931479e-03	ci right 7.115892e-03	k: 119	n:20000
RDH16   20000 perm   3 sec   (6476 perm/sec)   p_kst 5.950000e-03   p_cons 1.920000e-02   p_joint 1.225000e-02

Joint ci ratio: 2.865312e-01	ci left: 5.312224e-03	ci right 7.118745e-03	k: 185	n:30000
Cons ci ratio: 1.633527e-01	ci left: 1.729317e-02	ci right 2.040101e-02	k: 564	n:30000
KS ci ratio: 2.857593e-01	ci left: 5.343177e-03	ci right 7.154445e-03	k: 186	n:30000
RDH16   30000 perm   5 sec   (6146 perm/sec)   p_kst 6.200000e-03   p_cons 1.880000e-02   p_joint 6.166667e-03

Joint ci ratio: 1.572378e-01	ci left: 1.409589e-02	ci right 1.652521e-02	k: 611	n:40000
Cons ci ratio: 1.427612e-01	ci left: 1.717789e-02	ci right 1.984267e-02	k: 739	n:40000
KS ci ratio: 2.522715e-01	ci left: 5.243302e-03	ci right 6.779744e-03	k: 239	n:40000
RDH16   40000 perm   7 sec   (5830 perm/sec)   p_kst 5.975000e-03   p_cons 1.847500e-02   p_joint 1.527500e-02

Joint ci ratio: 9.860414e-02	ci left: 2.912718e-02	ci right 3.216764e-02	k: 1531	n:50000
Cons ci ratio: 1.276898e-01	ci left: 1.731752e-02	ci right 1.969884e-02	k: 924	n:50000
KS ci ratio: 2.215882e-01	ci left: 5.530762e-03	ci right 6.927498e-03	k: 310	n:50000
RDH16   50000 perm   9 sec   (5679 perm/sec)   p_kst 6.200000e-03   p_cons 1.848000e-02   p_joint 3.062000e-02

Joint ci ratio: 1.007000e-01	ci left: 2.339150e-02	ci right 2.588810e-02	k: 1477	n:60000
Cons ci ratio: 1.162448e-01	ci left: 1.751774e-02	ci right 1.969584e-02	k: 1115	n:60000
KS ci ratio: 2.056925e-01	ci left: 5.397726e-03	ci right 6.650779e-03	k: 360	n:60000
RDH16   60000 perm   11 sec   (5547 perm/sec)   p_kst 6.000000e-03   p_cons 1.858333e-02   p_joint 2.461667e-02

Joint ci ratio: 1.029648e-01	ci left: 1.924022e-02	ci right 2.134266e-02	k: 1419	n:70000
Cons ci ratio: 1.078754e-01	ci left: 1.751462e-02	ci right 1.952557e-02	k: 1295	n:70000
KS ci ratio: 1.871471e-01	ci left: 5.645528e-03	ci right 6.824536e-03	k: 435	n:70000
RDH16   70000 perm   13 sec   (5388 perm/sec)   p_kst 6.214286e-03   p_cons 1.850000e-02   p_joint 2.027143e-02

Joint ci ratio: 1.383347e-01	ci left: 9.249653e-03	ci right 1.063623e-02	k: 794	n:80000
Cons ci ratio: 9.643184e-02	ci left: 1.926072e-02	ci right 2.122429e-02	k: 1618	n:80000
KS ci ratio: 1.738852e-01	ci left: 5.763437e-03	ci right 6.872822e-03	k: 504	n:80000
RDH16   80000 perm   15 sec   (5280 perm/sec)   p_kst 6.300000e-03   p_cons 2.022500e-02   p_joint 9.925000e-03

Joint ci ratio: 1.353533e-01	ci left: 8.608024e-03	ci right 9.868356e-03	k: 830	n:90000
Cons ci ratio: 9.097743e-02	ci left: 1.929081e-02	ci right 2.114029e-02	k: 1818	n:90000
KS ci ratio: 1.638137e-01	ci left: 5.804144e-03	ci right 6.850280e-03	k: 568	n:90000
RDH16   90000 perm   17 sec   (5179 perm/sec)   p_kst 6.311111e-03   p_cons 2.020000e-02   p_joint 9.222222e-03

Joint ci ratio: 1.439597e-01	ci left: 6.829921e-03	ci right 7.898951e-03	k: 735	n:100000
Cons ci ratio: 8.659592e-02	ci left: 1.920974e-02	ci right 2.095825e-02	k: 2007	n:100000
KS ci ratio: 1.545758e-01	ci left: 5.895882e-03	ci right 6.893074e-03	k: 638	n:100000
RDH16   100000 perm   20 sec   (5078 perm/sec)   p_kst 6.380000e-03   p_cons 2.007000e-02   p_joint 7.350000e-03

Joint ci ratio: 1.481157e-01	ci left: 5.858447e-03	ci right 6.804228e-03	k: 695	n:110000
Cons ci ratio: 8.319862e-02	ci left: 1.895815e-02	ci right 2.061276e-02	k: 2175	n:110000
KS ci ratio: 1.468471e-01	ci left: 5.963536e-03	ci right 6.917313e-03	k: 707	n:110000
RDH16   110000 perm   22 sec   (4979 perm/sec)   p_kst 6.427273e-03   p_cons 1.977273e-02   p_joint 6.318182e-03

Joint ci ratio: 1.501202e-01	ci left: 5.225710e-03	ci right 6.081779e-03	k: 677	n:120000
Cons ci ratio: 7.953399e-02	ci left: 1.905192e-02	ci right 2.063807e-02	k: 2380	n:120000
KS ci ratio: 1.405372e-01	ci left: 5.988778e-03	ci right 6.901987e-03	k: 772	n:120000
RDH16   120000 perm   25 sec   (4835 perm/sec)   p_kst 6.433333e-03   p_cons 1.983333e-02   p_joint 5.641667e-03

Joint ci ratio: 1.538461e-01	ci left: 4.586821e-03	ci right 5.358592e-03	k: 645	n:130000
Cons ci ratio: 7.635971e-02	ci left: 1.910997e-02	ci right 2.063463e-02	k: 2582	n:130000
KS ci ratio: 1.354655e-01	ci left: 5.966277e-03	ci right 6.840575e-03	k: 831	n:130000
RDH16   130000 perm   27 sec   (4756 perm/sec)   p_kst 6.392308e-03   p_cons 1.986154e-02   p_joint 4.961538e-03

Joint ci ratio: 1.502926e-01	ci left: 4.472174e-03	ci right 5.205709e-03	k: 676	n:140000
Cons ci ratio: 7.398597e-02	ci left: 1.892935e-02	ci right 2.039064e-02	k: 2751	n:140000
KS ci ratio: 1.298829e-01	ci left: 6.044256e-03	ci right 6.890666e-03	k: 904	n:140000
RDH16   140000 perm   30 sec   (4678 perm/sec)   p_kst 6.457143e-03   p_cons 1.965000e-02   p_joint 4.828571e-03

Joint ci ratio: 1.442362e-01	ci left: 4.546464e-03	ci right 5.259547e-03	k: 734	n:150000
Cons ci ratio: 7.139790e-02	ci left: 1.899615e-02	ci right 2.040917e-02	k: 2954	n:150000
KS ci ratio: 1.246817e-01	ci left: 6.138316e-03	ci right 6.960932e-03	k: 981	n:150000
RDH16   150000 perm   33 sec   (4598 perm/sec)   p_kst 6.540000e-03   p_cons 1.969333e-02   p_joint 4.893333e-03

Joint ci ratio: 1.164599e-01	ci left: 6.621586e-03	ci right 7.446429e-03	k: 1124	n:160000
Cons ci ratio: 6.901913e-02	ci left: 1.907996e-02	ci right 2.045002e-02	k: 3161	n:160000
KS ci ratio: 1.197747e-01	ci left: 6.251527e-03	ci right 7.054007e-03	k: 1063	n:160000
RDH16   160000 perm   36 sec   (4505 perm/sec)   p_kst 6.643750e-03   p_cons 1.975625e-02   p_joint 7.025000e-03

Joint ci ratio: 1.269598e-01	ci left: 5.222298e-03	ci right 5.935899e-03	k: 947	n:170000
Cons ci ratio: 6.697493e-02	ci left: 1.909095e-02	ci right 2.041962e-02	k: 3357	n:170000
KS ci ratio: 1.160694e-01	ci left: 6.277706e-03	ci right 7.056909e-03	k: 1132	n:170000
RDH16   170000 perm   38 sec   (4424 perm/sec)   p_kst 6.658824e-03   p_cons 1.974706e-02   p_joint 5.570588e-03

Joint ci ratio: 1.257193e-01	ci left: 5.034358e-03	ci right 5.715055e-03	k: 966	n:180000
Cons ci ratio: 6.501830e-02	ci left: 1.915045e-02	ci right 2.044286e-02	k: 3562	n:180000
KS ci ratio: 1.129247e-01	ci left: 6.274317e-03	ci right 7.030593e-03	k: 1196	n:180000
RDH16   180000 perm   41 sec   (4361 perm/sec)   p_kst 6.644444e-03   p_cons 1.978889e-02   p_joint 5.366667e-03

Joint ci ratio: 1.355215e-01	ci left: 4.087004e-03	ci right 4.686168e-03	k: 832	n:190000
Cons ci ratio: 6.327511e-02	ci left: 1.917311e-02	ci right 2.043108e-02	k: 3761	n:190000
KS ci ratio: 1.102427e-01	ci left: 6.245944e-03	ci right 6.979758e-03	k: 1255	n:190000
RDH16   190000 perm   44 sec   (4297 perm/sec)   p_kst 6.605263e-03   p_cons 1.979474e-02   p_joint 4.378947e-03

Joint ci ratio: 1.368627e-01	ci left: 3.805341e-03	ci right 4.369182e-03	k: 816	n:200000
Cons ci ratio: 6.172864e-02	ci left: 1.915452e-02	ci right 2.037946e-02	k: 3952	n:200000
KS ci ratio: 1.074966e-01	ci left: 6.249798e-03	ci right 6.964616e-03	k: 1320	n:200000
RDH16   200000 perm   47 sec   (4235 perm/sec)   p_kst 6.600000e-03   p_cons 1.976000e-02   p_joint 4.080000e-03

Joint ci ratio: 1.395595e-01	ci left: 3.481579e-03	ci right 4.008456e-03	k: 785	n:210000
Cons ci ratio: 6.031999e-02	ci left: 1.911928e-02	ci right 2.031308e-02	k: 4139	n:210000
KS ci ratio: 1.049459e-01	ci left: 6.253490e-03	ci right 6.950711e-03	k: 1385	n:210000
RDH16   210000 perm   50 sec   (4170 perm/sec)   p_kst 6.595238e-03   p_cons 1.970952e-02   p_joint 3.738095e-03

Joint ci ratio: 1.528216e-01	ci left: 2.753904e-03	ci right 3.213891e-03	k: 655	n:220000
Cons ci ratio: 5.908719e-02	ci left: 1.903377e-02	ci right 2.019712e-02	k: 4314	n:220000
KS ci ratio: 1.028186e-01	ci left: 6.226022e-03	ci right 6.905259e-03	k: 1443	n:220000
RDH16   220000 perm   54 sec   (4111 perm/sec)   p_kst 6.559091e-03   p_cons 1.960909e-02   p_joint 2.977273e-03

Joint ci ratio: 1.587664e-01	ci left: 2.433574e-03	ci right 2.857375e-03	k: 607	n:230000
Cons ci ratio: 5.780892e-02	ci left: 1.903308e-02	ci right 2.017037e-02	k: 4507	n:230000
KS ci ratio: 1.006807e-01	ci left: 6.218029e-03	ci right 6.881455e-03	k: 1505	n:230000
RDH16   230000 perm   57 sec   (4046 perm/sec)   p_kst 6.543478e-03   p_cons 1.959565e-02   p_joint 2.639130e-03

Joint ci ratio: 1.567211e-01	ci left: 2.396207e-03	ci right 2.807619e-03	k: 623	n:240000
Cons ci ratio: 5.675194e-02	ci left: 1.893820e-02	ci right 2.004845e-02	k: 4677	n:240000
KS ci ratio: 9.876598e-02	ci left: 6.198644e-03	ci right 6.846694e-03	k: 1564	n:240000
RDH16   240000 perm   60 sec   (3987 perm/sec)   p_kst 6.516667e-03   p_cons 1.948750e-02   p_joint 2.595833e-03

Joint ci ratio: 1.611930e-01	ci left: 2.169747e-03	ci right 2.553936e-03	k: 589	n:250000
Cons ci ratio: 5.563979e-02	ci left: 1.892604e-02	ci right 2.001314e-02	k: 4866	n:250000
KS ci ratio: 9.680663e-02	ci left: 6.200437e-03	ci right 6.835085e-03	k: 1628	n:250000
RDH16   250000 perm   64 sec   (3927 perm/sec)   p_kst 6.512000e-03   p_cons 1.946400e-02   p_joint 2.356000e-03

Joint ci ratio: 1.659174e-01	ci left: 1.964548e-03	ci right 2.323617e-03	k: 556	n:260000
Cons ci ratio: 5.451911e-02	ci left: 1.896435e-02	ci right 2.003102e-02	k: 5068	n:260000
KS ci ratio: 9.487487e-02	ci left: 6.213476e-03	ci right 6.836062e-03	k: 1695	n:260000
RDH16   260000 perm   67 sec   (3865 perm/sec)   p_kst 6.519231e-03   p_cons 1.949231e-02   p_joint 2.138462e-03

Joint ci ratio: 1.633008e-01	ci left: 1.955707e-03	ci right 2.306969e-03	k: 574	n:270000
Cons ci ratio: 5.348424e-02	ci left: 1.898540e-02	ci right 2.003236e-02	k: 5266	n:270000
KS ci ratio: 9.326757e-02	ci left: 6.196722e-03	ci right 6.806536e-03	k: 1754	n:270000
RDH16   270000 perm   71 sec   (3812 perm/sec)   p_kst 6.496296e-03   p_cons 1.950370e-02   p_joint 2.125926e-03

Joint ci ratio: 1.648952e-01	ci left: 1.848179e-03	ci right 2.183691e-03	k: 563	n:280000
Cons ci ratio: 5.264385e-02	ci left: 1.890642e-02	ci right 1.993214e-02	k: 5436	n:280000
KS ci ratio: 9.146057e-02	ci left: 6.219639e-03	ci right 6.819215e-03	k: 1824	n:280000
RDH16   280000 perm   74 sec   (3760 perm/sec)   p_kst 6.514286e-03   p_cons 1.941429e-02   p_joint 2.010714e-03

Joint ci ratio: 1.677562e-01	ci left: 1.721649e-03	ci right 2.040161e-03	k: 544	n:290000
Cons ci ratio: 5.168229e-02	ci left: 1.894876e-02	ci right 1.995743e-02	k: 5640	n:290000
KS ci ratio: 8.996999e-02	ci left: 6.210740e-03	ci right 6.799187e-03	k: 1885	n:290000
RDH16   290000 perm   78 sec   (3709 perm/sec)   p_kst 6.500000e-03   p_cons 1.944828e-02   p_joint 1.875862e-03

Joint ci ratio: 1.649063e-01	ci left: 1.724958e-03	ci right 2.038123e-03	k: 563	n:300000
Cons ci ratio: 5.078043e-02	ci left: 1.898185e-02	ci right 1.997413e-02	k: 5842	n:300000
KS ci ratio: 8.857288e-02	ci left: 6.199249e-03	ci right 6.777013e-03	k: 1945	n:300000
RDH16   300000 perm   82 sec   (3661 perm/sec)   p_kst 6.483333e-03   p_cons 1.947333e-02   p_joint 1.876667e-03

Joint ci ratio: 1.626165e-01	ci left: 1.718812e-03	ci right 2.026104e-03	k: 579	n:310000
Cons ci ratio: 5.002133e-02	ci left: 1.893966e-02	ci right 1.991452e-02	k: 6021	n:310000
KS ci ratio: 8.706433e-02	ci left: 6.213812e-03	ci right 6.782569e-03	k: 2013	n:310000
RDH16   310000 perm   86 sec   (3603 perm/sec)   p_kst 6.493548e-03   p_cons 1.942258e-02   p_joint 1.867742e-03

Joint ci ratio: 1.596167e-01	ci left: 1.731078e-03	ci right 2.034307e-03	k: 601	n:320000
Cons ci ratio: 4.917009e-02	ci left: 1.899592e-02	ci right 1.995656e-02	k: 6231	n:320000
KS ci ratio: 8.560964e-02	ci left: 6.230602e-03	ci right 6.790891e-03	k: 2082	n:320000
RDH16   320000 perm   90 sec   (3558 perm/sec)   p_kst 6.506250e-03   p_cons 1.947187e-02   p_joint 1.878125e-03

Joint ci ratio: 1.575376e-01	ci left: 1.725181e-03	ci right 2.023069e-03	k: 617	n:330000
Cons ci ratio: 4.844532e-02	ci left: 1.898303e-02	ci right 1.992847e-02	k: 6419	n:330000
KS ci ratio: 8.432416e-02	ci left: 6.231615e-03	ci right 6.783166e-03	k: 2146	n:330000
RDH16   330000 perm   94 sec   (3515 perm/sec)   p_kst 6.503030e-03   p_cons 1.945152e-02   p_joint 1.869697e-03

Joint ci ratio: 1.416610e-01	ci left: 2.087849e-03	ci right 2.408964e-03	k: 763	n:340000
Cons ci ratio: 4.774062e-02	ci left: 1.897971e-02	ci right 1.991086e-02	k: 6610	n:340000
KS ci ratio: 8.311382e-02	ci left: 6.229746e-03	ci right 6.772834e-03	k: 2209	n:340000
RDH16   340000 perm   98 sec   (3472 perm/sec)   p_kst 6.497059e-03   p_cons 1.944118e-02   p_joint 2.244118e-03

Joint ci ratio: 1.412953e-01	ci left: 2.039217e-03	ci right 2.351974e-03	k: 767	n:350000
Cons ci ratio: 4.707287e-02	ci left: 1.897103e-02	ci right 1.988838e-02	k: 6799	n:350000
KS ci ratio: 8.193600e-02	ci left: 6.230837e-03	ci right 6.765954e-03	k: 2273	n:350000
RDH16   350000 perm   102 sec   (3427 perm/sec)   p_kst 6.494286e-03   p_cons 1.942571e-02   p_joint 2.191429e-03

Joint ci ratio: 1.414844e-01	ci left: 1.977208e-03	ci right 2.280895e-03	k: 765	n:360000
Cons ci ratio: 4.638164e-02	ci left: 1.900411e-02	ci right 1.990921e-02	k: 7003	n:360000
KS ci ratio: 8.066809e-02	ci left: 6.253695e-03	ci right 6.782073e-03	k: 2345	n:360000
RDH16   360000 perm   106 sec   (3386 perm/sec)   p_kst 6.513889e-03   p_cons 1.945278e-02   p_joint 2.125000e-03

Joint ci ratio: 1.395840e-01	ci left: 1.978532e-03	ci right 2.278000e-03	k: 786	n:370000
Cons ci ratio: 4.573941e-02	ci left: 1.901946e-02	ci right 1.991241e-02	k: 7201	n:370000
KS ci ratio: 7.950692e-02	ci left: 6.267429e-03	ci right 6.788993e-03	k: 2414	n:370000
RDH16   370000 perm   111 sec   (3348 perm/sec)   p_kst 6.524324e-03   p_cons 1.946216e-02   p_joint 2.124324e-03

Joint ci ratio: 1.375027e-01	ci left: 1.987434e-03	ci right 2.283397e-03	k: 810	n:380000
Cons ci ratio: 4.518545e-02	ci left: 1.898203e-02	ci right 1.986216e-02	k: 7379	n:380000
KS ci ratio: 7.850592e-02	ci left: 6.262431e-03	ci right 6.776717e-03	k: 2476	n:380000
RDH16   380000 perm   115 sec   (3310 perm/sec)   p_kst 6.515789e-03   p_cons 1.941842e-02   p_joint 2.131579e-03

Joint ci ratio: 1.390615e-01	ci left: 1.891911e-03	ci right 2.177107e-03	k: 792	n:390000
Cons ci ratio: 4.460302e-02	ci left: 1.898717e-02	ci right 1.985589e-02	k: 7573	n:390000
KS ci ratio: 7.764961e-02	ci left: 6.240125e-03	ci right 6.746737e-03	k: 2531	n:390000
RDH16   390000 perm   119 sec   (3268 perm/sec)   p_kst 6.489744e-03   p_cons 1.941795e-02   p_joint 2.030769e-03

Joint ci ratio: 1.609915e-01	ci left: 1.360844e-03	ci right 1.601471e-03	k: 591	n:400000
Cons ci ratio: 4.407438e-02	ci left: 1.896491e-02	ci right 1.982207e-02	k: 7756	n:400000
KS ci ratio: 7.659752e-02	ci left: 6.255748e-03	ci right 6.756441e-03	k: 2601	n:400000
RDH16   400000 perm   124 sec   (3232 perm/sec)   p_kst 6.502500e-03   p_cons 1.939000e-02   p_joint 1.477500e-03

Joint ci ratio: 1.252622e-01	ci left: 2.233628e-03	ci right 2.534449e-03	k: 976	n:410000
Cons ci ratio: 4.353057e-02	ci left: 1.897276e-02	ci right 1.981942e-02	k: 7951	n:410000
KS ci ratio: 7.567264e-02	ci left: 6.256295e-03	ci right 6.750718e-03	k: 2665	n:410000
RDH16   410000 perm   128 sec   (3195 perm/sec)   p_kst 6.500000e-03   p_cons 1.939268e-02   p_joint 2.380488e-03

Joint ci ratio: 1.129987e-01	ci left: 2.695653e-03	ci right 3.020790e-03	k: 1199	n:420000
Cons ci ratio: 4.301987e-02	ci left: 1.896851e-02	ci right 1.980481e-02	k: 8141	n:420000
KS ci ratio: 7.471163e-02	ci left: 6.268534e-03	ci right 6.757360e-03	k: 2734	n:420000
RDH16   420000 perm   133 sec   (3160 perm/sec)   p_kst 6.509524e-03   p_cons 1.938333e-02   p_joint 2.854762e-03

Joint ci ratio: 1.124867e-01	ci left: 2.657820e-03	ci right 2.976845e-03	k: 1210	n:430000
Cons ci ratio: 4.256582e-02	ci left: 1.892999e-02	ci right 1.975557e-02	k: 8316	n:430000
KS ci ratio: 7.385264e-02	ci left: 6.268826e-03	ci right 6.751813e-03	k: 2798	n:430000
RDH16   430000 perm   138 sec   (3127 perm/sec)   p_kst 6.506977e-03   p_cons 1.933953e-02   p_joint 2.813953e-03

Joint ci ratio: 1.141565e-01	ci left: 2.520114e-03	ci right 2.827402e-03	k: 1175	n:440000
Cons ci ratio: 4.210311e-02	ci left: 1.891352e-02	ci right 1.972919e-02	k: 8500	n:440000
KS ci ratio: 7.309975e-02	ci left: 6.255747e-03	ci right 6.732604e-03	k: 2856	n:440000
RDH16   440000 perm   142 sec   (3091 perm/sec)   p_kst 6.490909e-03   p_cons 1.931818e-02   p_joint 2.670455e-03

Joint ci ratio: 1.128682e-01	ci left: 2.522408e-03	ci right 2.826274e-03	k: 1202	n:450000
Cons ci ratio: 4.157226e-02	ci left: 1.897261e-02	ci right 1.978027e-02	k: 8718	n:450000
KS ci ratio: 7.233197e-02	ci left: 6.249821e-03	ci right 6.721012e-03	k: 2917	n:450000
RDH16   450000 perm   147 sec   (3058 perm/sec)   p_kst 6.482222e-03   p_cons 1.937333e-02   p_joint 2.671111e-03

Joint ci ratio: 1.118506e-01	ci left: 2.514055e-03	ci right 2.814003e-03	k: 1224	n:460000
Cons ci ratio: 4.115973e-02	ci left: 1.893880e-02	ci right 1.973683e-02	k: 8894	n:460000
KS ci ratio: 7.151543e-02	ci left: 6.256988e-03	ci right 6.723173e-03	k: 2984	n:460000
RDH16   460000 perm   152 sec   (3026 perm/sec)   p_kst 6.486957e-03   p_cons 1.933478e-02   p_joint 2.660870e-03

Joint ci ratio: 1.105937e-01	ci left: 2.518481e-03	ci right 2.815362e-03	k: 1252	n:470000
Cons ci ratio: 4.076154e-02	ci left: 1.890437e-02	ci right 1.969306e-02	k: 9069	n:470000
KS ci ratio: 7.064443e-02	ci left: 6.278512e-03	ci right 6.740369e-03	k: 3058	n:470000
RDH16   470000 perm   157 sec   (2994 perm/sec)   p_kst 6.506383e-03   p_cons 1.929574e-02   p_joint 2.663830e-03

Joint ci ratio: 1.146098e-01	ci left: 2.291876e-03	ci right 2.572518e-03	k: 1166	n:480000
Cons ci ratio: 4.032356e-02	ci left: 1.891885e-02	ci right 1.969947e-02	k: 9267	n:480000
KS ci ratio: 6.988313e-02	ci left: 6.284841e-03	ci right 6.741980e-03	k: 3125	n:480000
RDH16   480000 perm   162 sec   (2963 perm/sec)   p_kst 6.510417e-03   p_cons 1.930625e-02   p_joint 2.429167e-03

Joint ci ratio: 1.147606e-01	ci left: 2.239152e-03	ci right 2.513723e-03	k: 1163	n:490000
Cons ci ratio: 3.993814e-02	ci left: 1.889641e-02	ci right 1.966848e-02	k: 9447	n:490000
KS ci ratio: 6.918955e-02	ci left: 6.282914e-03	ci right 6.735195e-03	k: 3188	n:490000
RDH16   490000 perm   167 sec   (2932 perm/sec)   p_kst 6.506122e-03   p_cons 1.927959e-02   p_joint 2.373469e-03

Joint ci ratio: 1.134997e-01	ci left: 2.244885e-03	ci right 2.516932e-03	k: 1189	n:500000
Cons ci ratio: 3.949669e-02	ci left: 1.893827e-02	ci right 1.970331e-02	k: 9659	n:500000
KS ci ratio: 6.854806e-02	ci left: 6.275189e-03	ci right 6.722559e-03	k: 3248	n:500000
RDH16   500000 perm   172 sec   (2902 perm/sec)   p_kst 6.496000e-03   p_cons 1.931800e-02   p_joint 2.378000e-03

Joint ci ratio: 1.037711e-01	ci left: 2.645368e-03	ci right 2.936796e-03	k: 1422	n:510000
Cons ci ratio: 3.912416e-02	ci left: 1.892611e-02	ci right 1.968328e-02	k: 9844	n:510000
KS ci ratio: 6.794475e-02	ci left: 6.263929e-03	ci right 6.706411e-03	k: 3306	n:510000
RDH16   510000 perm   177 sec   (2873 perm/sec)   p_kst 6.482353e-03   p_cons 1.930196e-02   p_joint 2.788235e-03

Joint ci ratio: 1.069481e-01	ci left: 2.439072e-03	ci right 2.716517e-03	k: 1339	n:520000
Cons ci ratio: 3.873048e-02	ci left: 1.894493e-02	ci right 1.969506e-02	k: 10045	n:520000
KS ci ratio: 6.729674e-02	ci left: 6.264465e-03	ci right 6.702600e-03	k: 3370	n:520000
RDH16   520000 perm   183 sec   (2845 perm/sec)   p_kst 6.480769e-03   p_cons 1.931731e-02   p_joint 2.575000e-03

Joint ci ratio: 1.077190e-01	ci left: 2.358159e-03	ci right 2.628457e-03	k: 1320	n:530000
Cons ci ratio: 3.839816e-02	ci left: 1.891448e-02	ci right 1.965683e-02	k: 10220	n:530000
KS ci ratio: 6.668646e-02	ci left: 6.261288e-03	ci right 6.695076e-03	k: 3432	n:530000
RDH16   530000 perm   188 sec   (2815 perm/sec)   p_kst 6.475472e-03   p_cons 1.928302e-02   p_joint 2.490566e-03

Joint ci ratio: 1.089267e-01	ci left: 2.262235e-03	ci right 2.524631e-03	k: 1291	n:540000
Cons ci ratio: 3.809480e-02	ci left: 1.886500e-02	ci right 1.959943e-02	k: 10384	n:540000
KS ci ratio: 6.592184e-02	ci left: 6.291034e-03	ci right 6.721694e-03	k: 3512	n:540000
RDH16   540000 perm   194 sec   (2786 perm/sec)   p_kst 6.503704e-03   p_cons 1.922963e-02   p_joint 2.390741e-03

Joint ci ratio: 1.085089e-01	ci left: 2.238789e-03	ci right 2.497406e-03	k: 1301	n:550000
Cons ci ratio: 3.768757e-02	ci left: 1.892722e-02	ci right 1.965603e-02	k: 10609	n:550000
KS ci ratio: 6.531113e-02	ci left: 6.294683e-03	ci right 6.721450e-03	k: 3578	n:550000
RDH16   550000 perm   199 sec   (2759 perm/sec)   p_kst 6.505455e-03   p_cons 1.928909e-02   p_joint 2.365455e-03

Joint ci ratio: 1.076854e-01	ci left: 2.233559e-03	ci right 2.489490e-03	k: 1321	n:560000
Cons ci ratio: 3.735645e-02	ci left: 1.892357e-02	ci right 1.964570e-02	k: 10798	n:560000
KS ci ratio: 6.473496e-02	ci left: 6.294705e-03	ci right 6.717568e-03	k: 3642	n:560000
RDH16   560000 perm   205 sec   (2732 perm/sec)   p_kst 6.503571e-03   p_cons 1.928214e-02   p_joint 2.358929e-03

Joint ci ratio: 1.066813e-01	ci left: 2.237058e-03	ci right 2.490849e-03	k: 1346	n:570000
Cons ci ratio: 3.702188e-02	ci left: 1.893224e-02	ci right 1.964809e-02	k: 10994	n:570000
KS ci ratio: 6.409550e-02	ci left: 6.310281e-03	ci right 6.729847e-03	k: 3715	n:570000
RDH16   570000 perm   211 sec   (2705 perm/sec)   p_kst 6.517544e-03   p_cons 1.928772e-02   p_joint 2.361404e-03

Joint ci ratio: 1.085992e-01	ci left: 2.119628e-03	ci right 2.364696e-03	k: 1299	n:580000
Cons ci ratio: 3.671455e-02	ci left: 1.892185e-02	ci right 1.963124e-02	k: 11179	n:580000
KS ci ratio: 6.359299e-02	ci left: 6.301582e-03	ci right 6.717164e-03	k: 3774	n:580000
RDH16   580000 perm   216 sec   (2679 perm/sec)   p_kst 6.506897e-03   p_cons 1.927414e-02   p_joint 2.239655e-03

Joint ci ratio: 1.074883e-01	ci left: 2.128229e-03	ci right 2.371615e-03	k: 1326	n:590000
Cons ci ratio: 3.639027e-02	ci left: 1.893703e-02	ci right 1.964059e-02	k: 11379	n:590000
KS ci ratio: 6.313528e-02	ci left: 6.286517e-03	ci right 6.698012e-03	k: 3829	n:590000
RDH16   590000 perm   222 sec   (2653 perm/sec)   p_kst 6.489831e-03   p_cons 1.928644e-02   p_joint 2.247458e-03

Joint ci ratio: 1.141487e-01	ci left: 1.849666e-03	ci right 2.075186e-03	k: 1176	n:600000
Cons ci ratio: 3.609669e-02	ci left: 1.892860e-02	ci right 1.962605e-02	k: 11565	n:600000
KS ci ratio: 6.267919e-02	ci left: 6.273606e-03	ci right 6.681181e-03	k: 3885	n:600000
RDH16   600000 perm   228 sec   (2627 perm/sec)   p_kst 6.475000e-03   p_cons 1.927500e-02   p_joint 1.960000e-03

Joint ci ratio: 1.129549e-01	ci left: 1.859164e-03	ci right 2.083313e-03	k: 1201	n:610000
Cons ci ratio: 3.579458e-02	ci left: 1.893672e-02	ci right 1.962851e-02	k: 11761	n:610000
KS ci ratio: 6.208242e-02	ci left: 6.291795e-03	ci right 6.696520e-03	k: 3960	n:610000
RDH16   610000 perm   235 sec   (2601 perm/sec)   p_kst 6.491803e-03   p_cons 1.928033e-02   p_joint 1.968852e-03

Joint ci ratio: 1.121187e-01	ci left: 1.857392e-03	ci right 2.079561e-03	k: 1219	n:620000
Cons ci ratio: 3.546365e-02	ci left: 1.898297e-02	ci right 1.966992e-02	k: 11981	n:620000
KS ci ratio: 6.165634e-02	ci left: 6.277650e-03	ci right 6.678595e-03	k: 4015	n:620000
RDH16   620000 perm   241 sec   (2575 perm/sec)   p_kst 6.475806e-03   p_cons 1.932419e-02   p_joint 1.966129e-03

Joint ci ratio: 1.129585e-01	ci left: 1.800140e-03	ci right 2.017180e-03	k: 1201	n:630000
Cons ci ratio: 3.518734e-02	ci left: 1.897900e-02	ci right 1.966035e-02	k: 12170	n:630000
KS ci ratio: 6.111061e-02	ci left: 6.290537e-03	ci right 6.688624e-03	k: 4087	n:630000
RDH16   630000 perm   247 sec   (2552 perm/sec)   p_kst 6.487302e-03   p_cons 1.931746e-02   p_joint 1.906349e-03

Joint ci ratio: 1.119843e-01	ci left: 1.803902e-03	ci right 2.019396e-03	k: 1222	n:640000
Cons ci ratio: 3.492028e-02	ci left: 1.897208e-02	ci right 1.964790e-02	k: 12357	n:640000
KS ci ratio: 6.067462e-02	ci left: 6.283031e-03	ci right 6.677706e-03	k: 4146	n:640000
RDH16   640000 perm   253 sec   (2529 perm/sec)   p_kst 6.478125e-03   p_cons 1.930781e-02   p_joint 1.909375e-03

Joint ci ratio: 1.148437e-01	ci left: 1.686454e-03	ci right 1.893411e-03	k: 1162	n:650000
Cons ci ratio: 3.465216e-02	ci left: 1.897302e-02	ci right 1.964358e-02	k: 12549	n:650000
KS ci ratio: 6.013999e-02	ci left: 6.298497e-03	ci right 6.690536e-03	k: 4220	n:650000
RDH16   650000 perm   259 sec   (2506 perm/sec)   p_kst 6.492308e-03   p_cons 1.930615e-02   p_joint 1.787692e-03

Joint ci ratio: 1.141589e-01	ci left: 1.681506e-03	ci right 1.886543e-03	k: 1176	n:660000
Cons ci ratio: 3.440940e-02	ci left: 1.895292e-02	ci right 1.961798e-02	k: 12727	n:660000
KS ci ratio: 5.973133e-02	ci left: 6.289626e-03	ci right 6.678361e-03	k: 4278	n:660000
RDH16   660000 perm   266 sec   (2484 perm/sec)   p_kst 6.481818e-03   p_cons 1.928333e-02   p_joint 1.781818e-03

Joint ci ratio: 1.134863e-01	ci left: 1.676710e-03	ci right 1.879876e-03	k: 1190	n:670000
Cons ci ratio: 3.417303e-02	ci left: 1.893195e-02	ci right 1.959162e-02	k: 12904	n:670000
KS ci ratio: 5.924844e-02	ci left: 6.298675e-03	ci right 6.684715e-03	k: 4348	n:670000
RDH16   670000 perm   272 sec   (2463 perm/sec)   p_kst 6.489552e-03   p_cons 1.925970e-02   p_joint 1.776119e-03

Joint ci ratio: 1.127318e-01	ci left: 1.674916e-03	ci right 1.876425e-03	k: 1206	n:680000
Cons ci ratio: 3.391371e-02	ci left: 1.894224e-02	ci right 1.959716e-02	k: 13102	n:680000
KS ci ratio: 5.892490e-02	ci left: 6.275591e-03	ci right 6.658044e-03	k: 4396	n:680000
RDH16   680000 perm   278 sec   (2443 perm/sec)   p_kst 6.464706e-03   p_cons 1.926765e-02   p_joint 1.773529e-03

Joint ci ratio: 1.138730e-01	ci left: 1.616842e-03	ci right 1.813466e-03	k: 1182	n:690000
Cons ci ratio: 3.363058e-02	ci left: 1.898530e-02	ci right 1.963613e-02	k: 13323	n:690000
KS ci ratio: 5.854697e-02	ci left: 6.266035e-03	ci right 6.645373e-03	k: 4453	n:690000
RDH16   690000 perm   285 sec   (2422 perm/sec)   p_kst 6.453623e-03   p_cons 1.930870e-02   p_joint 1.713043e-03

Joint ci ratio: 1.287339e-01	ci left: 1.237683e-03	ci right 1.409343e-03	k: 925	n:700000
Cons ci ratio: 3.337829e-02	ci left: 1.900024e-02	ci right 1.964660e-02	k: 13525	n:700000
KS ci ratio: 5.815027e-02	ci left: 6.262391e-03	ci right 6.638854e-03	k: 4514	n:700000
RDH16   700000 perm   291 sec   (2403 perm/sec)   p_kst 6.448571e-03   p_cons 1.932143e-02   p_joint 1.321429e-03

Joint ci ratio: 1.280446e-01	ci left: 1.233883e-03	ci right 1.404030e-03	k: 935	n:710000
Cons ci ratio: 3.311807e-02	ci left: 1.903014e-02	ci right 1.967238e-02	k: 13738	n:710000
KS ci ratio: 5.778060e-02	ci left: 6.254694e-03	ci right 6.628224e-03	k: 4572	n:710000
RDH16   710000 perm   298 sec   (2382 perm/sec)   p_kst 6.439437e-03   p_cons 1.934930e-02   p_joint 1.316901e-03

Joint ci ratio: 1.302953e-01	ci left: 1.173735e-03	ci right 1.338653e-03	k: 903	n:720000
Cons ci ratio: 3.288428e-02	ci left: 1.903581e-02	ci right 1.967362e-02	k: 13934	n:720000
KS ci ratio: 5.743037e-02	ci left: 6.244480e-03	ci right 6.615064e-03	k: 4628	n:720000
RDH16   720000 perm   305 sec   (2361 perm/sec)   p_kst 6.427778e-03   p_cons 1.935278e-02   p_joint 1.254167e-03

Joint ci ratio: 1.350944e-01	ci left: 1.074216e-03	ci right 1.231156e-03	k: 840	n:730000
Cons ci ratio: 3.268605e-02	ci left: 1.900601e-02	ci right 1.963891e-02	k: 14104	n:730000
KS ci ratio: 5.700077e-02	ci left: 6.253458e-03	ci right 6.621708e-03	k: 4698	n:730000
RDH16   730000 perm   312 sec   (2341 perm/sec)   p_kst 6.435616e-03   p_cons 1.932055e-02   p_joint 1.150685e-03

Joint ci ratio: 1.246917e-01	ci left: 1.250602e-03	ci right 1.418205e-03	k: 986	n:740000
Cons ci ratio: 3.246818e-02	ci left: 1.900384e-02	ci right 1.963237e-02	k: 14294	n:740000
KS ci ratio: 5.663449e-02	ci left: 6.250213e-03	ci right 6.615829e-03	k: 4759	n:740000
RDH16   740000 perm   319 sec   (2322 perm/sec)   p_kst 6.431081e-03   p_cons 1.931622e-02   p_joint 1.332432e-03

Joint ci ratio: 1.233853e-01	ci left: 1.261059e-03	ci right 1.428164e-03	k: 1007	n:750000
Cons ci ratio: 3.224779e-02	ci left: 1.900967e-02	ci right 1.963405e-02	k: 14490	n:750000
KS ci ratio: 5.623997e-02	ci left: 6.254950e-03	ci right 6.618211e-03	k: 4826	n:750000
RDH16   750000 perm   326 sec   (2303 perm/sec)   p_kst 6.434667e-03   p_cons 1.932000e-02   p_joint 1.342667e-03

Joint ci ratio: 1.221786e-01	ci left: 1.269974e-03	ci right 1.436495e-03	k: 1027	n:760000
Cons ci ratio: 3.205521e-02	ci left: 1.898795e-02	ci right 1.960782e-02	k: 14665	n:760000
KS ci ratio: 5.585357e-02	ci left: 6.259571e-03	ci right 6.620522e-03	k: 4893	n:760000
RDH16   760000 perm   333 sec   (2285 perm/sec)   p_kst 6.438158e-03   p_cons 1.929605e-02   p_joint 1.351316e-03

Joint ci ratio: 1.264385e-01	ci left: 1.167911e-03	ci right 1.326789e-03	k: 959	n:770000
Cons ci ratio: 3.184744e-02	ci left: 1.898871e-02	ci right 1.960452e-02	k: 14857	n:770000
KS ci ratio: 5.550320e-02	ci left: 6.257676e-03	ci right 6.616182e-03	k: 4955	n:770000
RDH16   770000 perm   340 sec   (2267 perm/sec)   p_kst 6.435065e-03   p_cons 1.929481e-02   p_joint 1.245455e-03

Joint ci ratio: 1.253975e-01	ci left: 1.172804e-03	ci right 1.330937e-03	k: 975	n:780000
Cons ci ratio: 3.163723e-02	ci left: 1.899710e-02	ci right 1.960904e-02	k: 15055	n:780000
KS ci ratio: 5.519255e-02	ci left: 6.248250e-03	ci right 6.604149e-03	k: 5011	n:780000
RDH16   780000 perm   347 sec   (2249 perm/sec)   p_kst 6.424359e-03   p_cons 1.930128e-02   p_joint 1.250000e-03

Joint ci ratio: 1.067562e-01	ci left: 1.612820e-03	ci right 1.795928e-03	k: 1345	n:790000
Cons ci ratio: 3.144270e-02	ci left: 1.899147e-02	ci right 1.959940e-02	k: 15242	n:790000
KS ci ratio: 5.490342e-02	ci left: 6.235322e-03	ci right 6.588565e-03	k: 5064	n:790000
RDH16   790000 perm   354 sec   (2232 perm/sec)   p_kst 6.410127e-03   p_cons 1.929367e-02   p_joint 1.702532e-03

Joint ci ratio: 1.075607e-01	ci left: 1.568328e-03	ci right 1.747811e-03	k: 1325	n:800000
Cons ci ratio: 3.123623e-02	ci left: 1.900460e-02	ci right 1.960888e-02	k: 15444	n:800000
KS ci ratio: 5.452771e-02	ci left: 6.243684e-03	ci right 6.594904e-03	k: 5134	n:800000
RDH16   800000 perm   361 sec   (2214 perm/sec)   p_kst 6.417500e-03   p_cons 1.930500e-02   p_joint 1.656250e-03

Joint ci ratio: 1.071177e-01	ci left: 1.562181e-03	ci right 1.740178e-03	k: 1336	n:810000
Cons ci ratio: 3.106821e-02	ci left: 1.897577e-02	ci right 1.957583e-02	k: 15612	n:810000
KS ci ratio: 5.419631e-02	ci left: 6.243322e-03	ci right 6.592321e-03	k: 5197	n:810000
RDH16   810000 perm   369 sec   (2197 perm/sec)   p_kst 6.416049e-03   p_cons 1.927407e-02   p_joint 1.649383e-03

Joint ci ratio: 1.064431e-01	ci left: 1.563309e-03	ci right 1.740242e-03	k: 1353	n:820000
Cons ci ratio: 3.088990e-02	ci left: 1.896338e-02	ci right 1.955954e-02	k: 15793	n:820000
KS ci ratio: 5.385542e-02	ci left: 6.246585e-03	ci right 6.593501e-03	k: 5263	n:820000
RDH16   820000 perm   376 sec   (2180 perm/sec)   p_kst 6.418293e-03   p_cons 1.925976e-02   p_joint 1.650000e-03

Joint ci ratio: 1.058198e-01	ci left: 1.563239e-03	ci right 1.739064e-03	k: 1369	n:830000
Cons ci ratio: 3.071168e-02	ci left: 1.895488e-02	ci right 1.954728e-02	k: 15977	n:830000
KS ci ratio: 5.357655e-02	ci left: 6.236699e-03	ci right 6.581217e-03	k: 5318	n:830000
RDH16   830000 perm   384 sec   (2163 perm/sec)   p_kst 6.407229e-03   p_cons 1.924940e-02   p_joint 1.649398e-03

Joint ci ratio: 1.226052e-01	ci left: 1.140941e-03	ci right 1.291103e-03	k: 1020	n:840000
Cons ci ratio: 3.053652e-02	ci left: 1.894659e-02	ci right 1.953530e-02	k: 16161	n:840000
KS ci ratio: 5.330197e-02	ci left: 6.227053e-03	ci right 6.569221e-03	k: 5373	n:840000
RDH16   840000 perm   391 sec   (2147 perm/sec)   p_kst 6.396429e-03   p_cons 1.923929e-02   p_joint 1.214286e-03

Joint ci ratio: 1.219501e-01	ci left: 1.140064e-03	ci right 1.289251e-03	k: 1031	n:850000
Cons ci ratio: 3.035769e-02	ci left: 1.894669e-02	ci right 1.953189e-02	k: 16352	n:850000
KS ci ratio: 5.299720e-02	ci left: 6.225765e-03	ci right 6.565847e-03	k: 5435	n:850000
RDH16   850000 perm   399 sec   (2131 perm/sec)   p_kst 6.394118e-03   p_cons 1.923765e-02   p_joint 1.212941e-03

Joint ci ratio: 1.214220e-01	ci left: 1.136954e-03	ci right 1.285043e-03	k: 1040	n:860000
Cons ci ratio: 3.018104e-02	ci left: 1.894794e-02	ci right 1.952972e-02	k: 16544	n:860000
KS ci ratio: 5.268795e-02	ci left: 6.226808e-03	ci right 6.564902e-03	k: 5499	n:860000
RDH16   860000 perm   407 sec   (2115 perm/sec)   p_kst 6.394186e-03   p_cons 1.923721e-02   p_joint 1.209302e-03

Joint ci ratio: 1.019123e-01	ci left: 1.611162e-03	ci right 1.785286e-03	k: 1476	n:870000
Cons ci ratio: 3.000835e-02	ci left: 1.894804e-02	ci right 1.952643e-02	k: 16735	n:870000
KS ci ratio: 5.237458e-02	ci left: 6.230102e-03	ci right 6.566301e-03	k: 5565	n:870000
RDH16   870000 perm   414 sec   (2099 perm/sec)   p_kst 6.396552e-03   p_cons 1.923563e-02   p_joint 1.696552e-03

Joint ci ratio: 1.035048e-01	ci left: 1.543028e-03	ci right 1.712552e-03	k: 1431	n:880000
Cons ci ratio: 2.985658e-02	ci left: 1.892558e-02	ci right 1.950032e-02	k: 16906	n:880000
KS ci ratio: 5.208535e-02	ci left: 6.228839e-03	ci right 6.563059e-03	k: 5627	n:880000
RDH16   880000 perm   422 sec   (2083 perm/sec)   p_kst 6.394318e-03   p_cons 1.921136e-02   p_joint 1.626136e-03

Joint ci ratio: 1.031457e-01	ci left: 1.536636e-03	ci right 1.704837e-03	k: 1441	n:890000
Cons ci ratio: 2.969025e-02	ci left: 1.892483e-02	ci right 1.949628e-02	k: 17096	n:890000
KS ci ratio: 5.185132e-02	ci left: 6.215410e-03	ci right 6.547366e-03	k: 5678	n:890000
RDH16   890000 perm   430 sec   (2068 perm/sec)   p_kst 6.379775e-03   p_cons 1.920899e-02   p_joint 1.619101e-03

Joint ci ratio: 1.028257e-01	ci left: 1.529304e-03	ci right 1.696152e-03	k: 1450	n:900000
Cons ci ratio: 2.952754e-02	ci left: 1.892300e-02	ci right 1.949121e-02	k: 17285	n:900000
KS ci ratio: 5.157515e-02	ci left: 6.213251e-03	ci right 6.543271e-03	k: 5739	n:900000
RDH16   900000 perm   438 sec   (2053 perm/sec)   p_kst 6.376667e-03   p_cons 1.920556e-02   p_joint 1.611111e-03

Joint ci ratio: 1.037619e-01	ci left: 1.484664e-03	ci right 1.648205e-03	k: 1424	n:910000
Cons ci ratio: 2.936663e-02	ci left: 1.892231e-02	ci right 1.948735e-02	k: 17475	n:910000
KS ci ratio: 5.126778e-02	ci left: 6.219823e-03	ci right 6.548166e-03	k: 5808	n:910000
RDH16   910000 perm   447 sec   (2037 perm/sec)   p_kst 6.382418e-03   p_cons 1.920330e-02   p_joint 1.564835e-03

Joint ci ratio: 1.031484e-01	ci left: 1.486526e-03	ci right 1.649246e-03	k: 1441	n:920000
Cons ci ratio: 2.918306e-02	ci left: 1.895401e-02	ci right 1.951641e-02	k: 17695	n:920000
KS ci ratio: 5.095712e-02	ci left: 6.228405e-03	ci right 6.555149e-03	k: 5879	n:920000
RDH16   920000 perm   455 sec   (2023 perm/sec)   p_kst 6.390217e-03   p_cons 1.923370e-02   p_joint 1.566304e-03

Joint ci ratio: 1.024402e-01	ci left: 1.491495e-03	ci right 1.653570e-03	k: 1461	n:930000
Cons ci ratio: 2.903182e-02	ci left: 1.894768e-02	ci right 1.950693e-02	k: 17880	n:930000
KS ci ratio: 5.063491e-02	ci left: 6.241055e-03	ci right 6.566332e-03	k: 5954	n:930000
RDH16   930000 perm   463 sec   (2008 perm/sec)   p_kst 6.402151e-03   p_cons 1.922581e-02   p_joint 1.570968e-03

Joint ci ratio: 1.020226e-01	ci left: 1.488067e-03	ci right 1.649072e-03	k: 1473	n:940000
Cons ci ratio: 2.888616e-02	ci left: 1.893727e-02	ci right 1.949336e-02	k: 18061	n:940000
KS ci ratio: 5.033134e-02	ci left: 6.250290e-03	ci right 6.574039e-03	k: 6026	n:940000
RDH16   940000 perm   471 sec   (1994 perm/sec)   p_kst 6.410638e-03   p_cons 1.921383e-02   p_joint 1.567021e-03

Joint ci ratio: 1.015758e-01	ci left: 1.485739e-03	ci right 1.645746e-03	k: 1486	n:950000
Cons ci ratio: 2.871381e-02	ci left: 1.896471e-02	ci right 1.951823e-02	k: 18278	n:950000
KS ci ratio: 5.002078e-02	ci left: 6.262456e-03	ci right 6.584776e-03	k: 6101	n:950000
RDH16   950000 perm   480 sec   (1980 perm/sec)   p_kst 6.422105e-03   p_cons 1.924000e-02   p_joint 1.564211e-03

Joint ci ratio: 1.011348e-01	ci left: 1.483461e-03	ci right 1.642487e-03	k: 1499	n:960000
Cons ci ratio: 2.856971e-02	ci left: 1.895849e-02	ci right 1.950900e-02	k: 18463	n:960000
KS ci ratio: 4.975239e-02	ci left: 6.265114e-03	ci right 6.585791e-03	k: 6167	n:960000
RDH16   960000 perm   488 sec   (1967 perm/sec)   p_kst 6.423958e-03   p_cons 1.923229e-02   p_joint 1.561458e-03

Joint ci ratio: 1.006329e-01	ci left: 1.483241e-03	ci right 1.641408e-03	k: 1514	n:970000
Cons ci ratio: 2.841844e-02	ci left: 1.896469e-02	ci right 1.951242e-02	k: 18660	n:970000
KS ci ratio: 4.950027e-02	ci left: 6.264668e-03	ci right 6.583651e-03	k: 6230	n:970000
RDH16   970000 perm   497 sec   (1953 perm/sec)   p_kst 6.422680e-03   p_cons 1.923711e-02   p_joint 1.560825e-03

Joint ci ratio: 1.000403e-01	ci left: 1.486013e-03	ci right 1.643487e-03	k: 1532	n:980000
Cons ci ratio: 2.826267e-02	ci left: 1.897989e-02	ci right 1.952500e-02	k: 18866	n:980000
KS ci ratio: 4.922440e-02	ci left: 6.271290e-03	ci right 6.588780e-03	k: 6300	n:980000
RDH16   980000 perm   505 sec   (1939 perm/sec)   p_kst 6.428571e-03   p_cons 1.925102e-02   p_joint 1.563265e-03

Joint ci ratio: 9.971585e-02	ci left: 1.480851e-03	ci right 1.637240e-03	k: 1542	n:990000
Cons ci ratio: 2.812597e-02	ci left: 1.897272e-02	ci right 1.951495e-02	k: 19050	n:990000
KS ci ratio: 4.899180e-02	ci left: 6.267806e-03	ci right 6.583578e-03	k: 6360	n:990000
RDH16   990000 perm   514 sec   (1927 perm/sec)   p_kst 6.424242e-03   p_cons 1.924242e-02   p_joint 1.557576e-03

Outputting figure to mutsig2_images.part000000000145/RDH16.3_970_990000_0.0064242_0.019242_0.0015576.png
                gene_name: RDH16
               theta_stop: 0.100 
                    nperm: 990000 
                     p_ks: 0.0064 
        ci_ks_bounds_left: 0.0063 
       ci_ks_bounds_right: 0.0066 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.0016 
     ci_joint_bounds_left: 0.0015 
    ci_joint_bounds_right: 0.0016 

Current progress: 48 percent done.
RDH8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.227721e-02	ci left: 5.862053e-01	ci right 6.055388e-01	k: 5959	n:10000
Cons ci ratio: 7.213041e-02	ci left: 2.197085e-01	ci right 2.362502e-01	k: 2279	n:10000
KS ci ratio: 2.425064e-02	ci left: 7.143166e-01	ci right 7.319532e-01	k: 7232	n:10000
RDH8   10000 perm   1 sec   (7535 perm/sec)   p_kst 7.232000e-01   p_cons 2.279000e-01   p_joint 5.959000e-01

Outputting figure to mutsig2_images.part000000000145/RDH8.3_960_10000_0.7232_0.2279_0.5959.png
                gene_name: RDH8
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 50 percent done.
RDX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.989282e-02	ci left: 2.908294e-01	ci right 3.088873e-01	k: 2998	n:10000
Cons ci ratio: 3.152538e-02	ci left: 5.975480e-01	ci right 6.167896e-01	k: 6072	n:10000
KS ci ratio: 9.434992e-02	ci left: 1.402112e-01	ci right 1.541950e-01	k: 1471	n:10000
RDX   10000 perm   1 sec   (7035 perm/sec)   p_kst 1.471000e-01   p_cons 6.072000e-01   p_joint 2.998000e-01

Outputting figure to mutsig2_images.part000000000145/RDX.3_1804_10000_0.1471_0.6072_0.2998.png
                gene_name: RDX
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 52 percent done.
REG3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.809659e-02	ci left: 5.043512e-01	ci right 5.240405e-01	k: 5142	n:10000
Cons ci ratio: 3.082280e-02	ci left: 6.082933e-01	ci right 6.274380e-01	k: 6179	n:10000
KS ci ratio: 7.308596e-02	ci left: 2.151691e-01	ci right 2.315924e-01	k: 2233	n:10000
REG3A   10000 perm   1 sec   (7985 perm/sec)   p_kst 2.233000e-01   p_cons 6.179000e-01   p_joint 5.142000e-01

Outputting figure to mutsig2_images.part000000000145/REG3A.3_548_10000_0.2233_0.6179_0.5142.png
                gene_name: REG3A
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 54 percent done.
REL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.636482e-02	ci left: 5.275679e-01	ci right 5.472103e-01	k: 5374	n:10000
Cons ci ratio: 8.230215e-02	ci left: 1.772353e-01	ci right 1.925487e-01	k: 1848	n:10000
KS ci ratio: 1.789910e-02	ci left: 8.199499e-01	ci right 8.348589e-01	k: 8275	n:10000
REL   10000 perm   1 sec   (6892 perm/sec)   p_kst 8.275000e-01   p_cons 1.848000e-01   p_joint 5.374000e-01

Outputting figure to mutsig2_images.part000000000145/REL.3_1904_10000_0.8275_0.1848_0.5374.png
                gene_name: REL
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 56 percent done.
REPS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.035205e-01	ci left: 1.188712e-01	ci right 1.319479e-01	k: 1253	n:10000
Cons ci ratio: 1.803670e-01	ci left: 4.101996e-02	ci right 4.924766e-02	k: 450	n:10000
KS ci ratio: 5.002953e-02	ci left: 3.707712e-01	ci right 3.898986e-01	k: 3803	n:10000
REPS2   10000 perm   1 sec   (6727 perm/sec)   p_kst 3.803000e-01   p_cons 4.500000e-02   p_joint 1.253000e-01

Joint ci ratio: 9.298930e-02	ci left: 7.779311e-02	ci right 8.542905e-02	k: 1631	n:20000
Cons ci ratio: 1.310813e-01	ci left: 3.998807e-02	ci right 4.564582e-02	k: 855	n:20000
KS ci ratio: 3.504439e-02	ci left: 3.780491e-01	ci right 3.915844e-01	k: 7696	n:20000
REPS2   20000 perm   3 sec   (6003 perm/sec)   p_kst 3.848000e-01   p_cons 4.275000e-02   p_joint 8.155000e-02

Joint ci ratio: 6.539274e-02	ci left: 1.034579e-01	ci right 1.104851e-01	k: 3208	n:30000
Cons ci ratio: 1.137159e-01	ci left: 3.592946e-02	ci right 4.029391e-02	k: 1142	n:30000
KS ci ratio: 2.872974e-02	ci left: 3.773943e-01	ci right 3.884284e-01	k: 11487	n:30000
REPS2   30000 perm   5 sec   (5742 perm/sec)   p_kst 3.829000e-01   p_cons 3.806667e-02   p_joint 1.069333e-01

Joint ci ratio: 5.386382e-02	ci left: 1.137667e-01	ci right 1.200890e-01	k: 4676	n:40000
Cons ci ratio: 9.735771e-02	ci left: 3.705059e-02	ci right 4.086671e-02	k: 1557	n:40000
KS ci ratio: 2.487583e-02	ci left: 3.782323e-01	ci right 3.877847e-01	k: 15320	n:40000
REPS2   40000 perm   7 sec   (5553 perm/sec)   p_kst 3.830000e-01   p_cons 3.892500e-02   p_joint 1.169000e-01

Outputting figure to mutsig2_images.part000000000145/REPS2.3_2055_40000_0.383_0.038925_0.1169.png
                gene_name: REPS2
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 58 percent done.
RERE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.969896e-02	ci left: 4.837540e-01	ci right 5.034497e-01	k: 4936	n:10000
Cons ci ratio: 8.213870e-02	ci left: 1.778256e-01	ci right 1.931581e-01	k: 1854	n:10000
KS ci ratio: 1.591030e-02	ci left: 8.516164e-01	ci right 8.653740e-01	k: 8586	n:10000
RERE   10000 perm   2 sec   (5709 perm/sec)   p_kst 8.586000e-01   p_cons 1.854000e-01   p_joint 4.936000e-01

Outputting figure to mutsig2_images.part000000000145/RERE.3_4789_10000_0.8586_0.1854_0.4936.png
                gene_name: RERE
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 60 percent done.
RERG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.132093e-02	ci left: 6.006606e-01	ci right 6.198751e-01	k: 6103	n:10000
Cons ci ratio: 5.201841e-02	ci left: 3.526716e-01	ci right 3.716088e-01	k: 3621	n:10000
KS ci ratio: 2.255029e-03	ci left: 9.954855e-01	ci right 9.978102e-01	k: 9968	n:10000
RERG   10000 perm   1 sec   (7733 perm/sec)   p_kst 9.968000e-01   p_cons 3.621000e-01   p_joint 6.103000e-01

Outputting figure to mutsig2_images.part000000000145/RERG.3_616_10000_0.9968_0.3621_0.6103.png
                gene_name: RERG
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 1.00 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1.00 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 62 percent done.
RERGL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.490867e-03	ci left: 9.400391e-01	ci right 9.490997e-01	k: 9447	n:10000
Cons ci ratio: 2.583828e-02	ci left: 6.879873e-01	ci right 7.060978e-01	k: 6971	n:10000
KS ci ratio: 4.583094e-02	ci left: 4.126927e-01	ci right 4.321525e-01	k: 4224	n:10000
RERGL   10000 perm   1 sec   (7857 perm/sec)   p_kst 4.224000e-01   p_cons 6.971000e-01   p_joint 9.447000e-01

Outputting figure to mutsig2_images.part000000000145/RERGL.3_638_10000_0.4224_0.6971_0.9447.png
                gene_name: RERGL
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 63 percent done.
RETSAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.322914e-02	ci left: 7.313849e-01	ci right 7.486751e-01	k: 7401	n:10000
Cons ci ratio: 5.091111e-02	ci left: 3.626146e-01	ci right 3.816599e-01	k: 3721	n:10000
KS ci ratio: 3.535299e-02	ci left: 5.415883e-01	ci right 5.611817e-01	k: 5514	n:10000
RETSAT   10000 perm   1 sec   (6842 perm/sec)   p_kst 5.514000e-01   p_cons 3.721000e-01   p_joint 7.401000e-01

Outputting figure to mutsig2_images.part000000000145/RETSAT.3_1877_10000_0.5514_0.3721_0.7401.png
                gene_name: RETSAT
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 65 percent done.
RBMXL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.723101e-01	ci left: 1.753307e-02	ci right 2.315124e-02	k: 202	n:10000
Cons ci ratio: 1.972249e-01	ci left: 3.424249e-02	ci right 4.182967e-02	k: 379	n:10000
KS ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
RBMXL2   10000 perm   1 sec   (7845 perm/sec)   p_kst 6.680000e-02   p_cons 3.790000e-02   p_joint 2.020000e-02

Joint ci ratio: 2.478726e-01	ci left: 1.081866e-02	ci right 1.392552e-02	k: 246	n:20000
Cons ci ratio: 1.452206e-01	ci left: 3.259226e-02	ci right 3.774403e-02	k: 702	n:20000
KS ci ratio: 1.026161e-01	ci left: 6.450023e-02	ci right 7.152600e-02	k: 1359	n:20000
RBMXL2   20000 perm   3 sec   (6898 perm/sec)   p_kst 6.795000e-02   p_cons 3.510000e-02   p_joint 1.230000e-02

Joint ci ratio: 1.829841e-01	ci left: 1.368681e-02	ci right 1.647492e-02	k: 451	n:30000
Cons ci ratio: 1.176226e-01	ci left: 3.359645e-02	ci right 3.782741e-02	k: 1070	n:30000
KS ci ratio: 8.306762e-02	ci left: 6.622250e-02	ci right 7.199462e-02	k: 2072	n:30000
RBMXL2   30000 perm   5 sec   (6546 perm/sec)   p_kst 6.906667e-02   p_cons 3.566667e-02   p_joint 1.503333e-02

Joint ci ratio: 1.761795e-01	ci left: 1.114722e-02	ci right 1.332445e-02	k: 488	n:40000
Cons ci ratio: 1.016433e-01	ci left: 3.402493e-02	ci right 3.769285e-02	k: 1433	n:40000
KS ci ratio: 7.199490e-02	ci left: 6.651047e-02	ci right 7.150232e-02	k: 2759	n:40000
RBMXL2   40000 perm   6 sec   (6322 perm/sec)   p_kst 6.897500e-02   p_cons 3.582500e-02   p_joint 1.220000e-02

Joint ci ratio: 1.577435e-01	ci left: 1.123695e-02	ci right 1.318030e-02	k: 609	n:50000
Cons ci ratio: 9.119012e-02	ci left: 3.401245e-02	ci right 3.728175e-02	k: 1781	n:50000
KS ci ratio: 6.466655e-02	ci left: 6.624189e-02	ci right 7.068837e-02	k: 3422	n:50000
RBMXL2   50000 perm   8 sec   (6129 perm/sec)   p_kst 6.844000e-02   p_cons 3.562000e-02   p_joint 1.218000e-02

Joint ci ratio: 1.453116e-01	ci left: 1.111195e-02	ci right 1.286906e-02	k: 718	n:60000
Cons ci ratio: 8.331364e-02	ci left: 3.409889e-02	ci right 3.707958e-02	k: 2134	n:60000
KS ci ratio: 5.915297e-02	ci left: 6.617906e-02	ci right 7.022950e-02	k: 4091	n:60000
RBMXL2   60000 perm   10 sec   (5966 perm/sec)   p_kst 6.818333e-02   p_cons 3.556667e-02   p_joint 1.196667e-02

Joint ci ratio: 1.060960e-01	ci left: 1.811276e-02	ci right 2.015594e-02	k: 1338	n:70000
Cons ci ratio: 7.769863e-02	ci left: 3.372081e-02	ci right 3.646076e-02	k: 2455	n:70000
KS ci ratio: 5.472816e-02	ci left: 6.641384e-02	ci right 7.016490e-02	k: 4779	n:70000
RBMXL2   70000 perm   12 sec   (5831 perm/sec)   p_kst 6.827143e-02   p_cons 3.507143e-02   p_joint 1.911429e-02

Joint ci ratio: 1.041864e-01	ci left: 1.648084e-02	ci right 1.830440e-02	k: 1390	n:80000
Cons ci ratio: 7.328958e-02	ci left: 3.325823e-02	ci right 3.580067e-02	k: 2761	n:80000
KS ci ratio: 5.101266e-02	ci left: 6.698134e-02	ci right 7.050001e-02	k: 5498	n:80000
RBMXL2   80000 perm   14 sec   (5709 perm/sec)   p_kst 6.872500e-02   p_cons 3.451250e-02   p_joint 1.737500e-02

Joint ci ratio: 9.537924e-02	ci left: 1.754283e-02	ci right 1.931063e-02	k: 1657	n:90000
Cons ci ratio: 6.923961e-02	ci left: 3.319691e-02	ci right 3.558877e-02	k: 3094	n:90000
KS ci ratio: 4.826456e-02	ci left: 6.663834e-02	ci right 6.994511e-02	k: 6145	n:90000
RBMXL2   90000 perm   16 sec   (5589 perm/sec)   p_kst 6.827778e-02   p_cons 3.437778e-02   p_joint 1.841111e-02

Outputting figure to mutsig2_images.part000000000145/RBMXL2.2_1183_90000_0.068278_0.034378_0.018411.png
                gene_name: RBMXL2
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 67 percent done.
RBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.870566e-02	ci left: 6.414642e-01	ci right 6.602478e-01	k: 6509	n:10000
Cons ci ratio: 1.751436e-01	ci left: 4.350916e-02	ci right 5.195681e-02	k: 476	n:10000
KS ci ratio: 2.626723e-02	ci left: 6.809317e-01	ci right 6.991575e-01	k: 6901	n:10000
RBP1   10000 perm   1 sec   (8401 perm/sec)   p_kst 6.901000e-01   p_cons 4.760000e-02   p_joint 6.509000e-01

Joint ci ratio: 2.786657e-02	ci left: 4.903464e-01	ci right 5.042544e-01	k: 9946	n:20000
Cons ci ratio: 1.239162e-01	ci left: 4.469010e-02	ci right 5.064229e-02	k: 952	n:20000
KS ci ratio: 1.848318e-02	ci left: 6.857503e-01	ci right 6.985938e-01	k: 13844	n:20000
RBP1   20000 perm   3 sec   (7362 perm/sec)   p_kst 6.922000e-01   p_cons 4.760000e-02   p_joint 4.973000e-01

Joint ci ratio: 6.800892e-02	ci left: 9.629916e-02	ci right 1.031119e-01	k: 2990	n:30000
Cons ci ratio: 1.000261e-01	ci left: 4.625897e-02	ci right 5.116224e-02	k: 1460	n:30000
KS ci ratio: 1.506918e-02	ci left: 6.875780e-01	ci right 6.980513e-01	k: 20785	n:30000
RBP1   30000 perm   4 sec   (6949 perm/sec)   p_kst 6.928333e-01   p_cons 4.866667e-02   p_joint 9.966667e-02

Joint ci ratio: 5.489924e-02	ci left: 1.099378e-01	ci right 1.161685e-01	k: 4521	n:40000
Cons ci ratio: 8.674253e-02	ci left: 4.646411e-02	ci right 5.070174e-02	k: 1942	n:40000
KS ci ratio: 1.312501e-02	ci left: 6.858431e-01	ci right 6.949293e-01	k: 27616	n:40000
RBP1   40000 perm   6 sec   (6667 perm/sec)   p_kst 6.904000e-01   p_cons 4.855000e-02   p_joint 1.130250e-01

Outputting figure to mutsig2_images.part000000000145/RBP1.2_678_40000_0.6904_0.04855_0.11303.png
                gene_name: RBP1
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 69 percent done.
RBPMS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.097134e-01	ci left: 1.069558e-01	ci right 1.194705e-01	k: 1131	n:10000
Cons ci ratio: 1.071161e-01	ci left: 1.117389e-01	ci right 1.244845e-01	k: 1180	n:10000
KS ci ratio: 1.198041e-01	ci left: 9.087811e-02	ci right 1.025580e-01	k: 966	n:10000
RBPMS2   10000 perm   1 sec   (8127 perm/sec)   p_kst 9.660000e-02   p_cons 1.180000e-01   p_joint 1.131000e-01

Joint ci ratio: 6.383114e-02	ci left: 1.535621e-01	ci right 1.637373e-01	k: 3172	n:20000
Cons ci ratio: 7.592629e-02	ci left: 1.131172e-01	ci right 1.220943e-01	k: 2351	n:20000
KS ci ratio: 8.540206e-02	ci left: 9.121559e-02	ci right 9.940250e-02	k: 1905	n:20000
RBPMS2   20000 perm   3 sec   (6944 perm/sec)   p_kst 9.525000e-02   p_cons 1.175500e-01   p_joint 1.586000e-01

Outputting figure to mutsig2_images.part000000000145/RBPMS2.2_658_20000_0.09525_0.11755_0.1586.png
                gene_name: RBPMS2
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 71 percent done.
RCAN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.780142e-02	ci left: 3.923700e-01	ci right 4.116871e-01	k: 4020	n:10000
Cons ci ratio: 3.068591e-02	ci left: 6.104028e-01	ci right 6.295273e-01	k: 6200	n:10000
KS ci ratio: 6.582365e-02	ci left: 2.531052e-01	ci right 2.704338e-01	k: 2617	n:10000
RCAN1   10000 perm   1 sec   (8280 perm/sec)   p_kst 2.617000e-01   p_cons 6.200000e-01   p_joint 4.020000e-01

Outputting figure to mutsig2_images.part000000000145/RCAN1.2_866_10000_0.2617_0.62_0.402.png
                gene_name: RCAN1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 73 percent done.
RCAN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.189849e-02	ci left: 9.100826e-01	ci right 9.210739e-01	k: 9157	n:10000
KS ci ratio: 1.526929e-02	ci left: 8.615148e-01	ci right 8.748699e-01	k: 8683	n:10000
RCAN3   10000 perm   1 sec   (8438 perm/sec)   p_kst 8.683000e-01   p_cons 9.157000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RCAN3.2_742_10000_0.8683_0.9157_1.png
                gene_name: RCAN3
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
RCBTB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.930804e-02	ci left: 1.280657e-01	ci right 1.415478e-01	k: 1347	n:10000
KS ci ratio: 2.637780e-02	ci left: 6.791178e-01	ci right 6.973724e-01	k: 6883	n:10000
RCBTB2   10000 perm   1 sec   (7167 perm/sec)   p_kst 6.883000e-01   p_cons 1.347000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RCBTB2.2_1704_10000_0.6883_0.1347_1.png
                gene_name: RCBTB2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
RCCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.703364e-02	ci left: 8.338874e-01	ci right 8.483133e-01	k: 8412	n:10000
KS ci ratio: 3.955631e-02	ci left: 4.855531e-01	ci right 5.052495e-01	k: 4954	n:10000
RCCD1   10000 perm   1 sec   (8069 perm/sec)   p_kst 4.954000e-01   p_cons 8.412000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RCCD1.2_1159_10000_0.4954_0.8412_1.png
                gene_name: RCCD1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
RCHY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.505339e-01	ci left: 5.870163e-02	ci right 6.835455e-02	k: 634	n:10000
Cons ci ratio: 4.034749e-02	ci left: 4.756597e-01	ci right 4.953487e-01	k: 4855	n:10000
KS ci ratio: 1.626371e-01	ci left: 5.041952e-02	ci right 5.944196e-02	k: 548	n:10000
RCHY1   10000 perm   1 sec   (7926 perm/sec)   p_kst 5.480000e-02   p_cons 4.855000e-01   p_joint 6.340000e-02

Joint ci ratio: 1.075349e-01	ci left: 5.894035e-02	ci right 6.568759e-02	k: 1245	n:20000
Cons ci ratio: 2.829624e-02	ci left: 4.826989e-01	ci right 4.966041e-01	k: 9793	n:20000
KS ci ratio: 1.163560e-01	ci left: 5.056727e-02	ci right 5.686327e-02	k: 1073	n:20000
RCHY1   20000 perm   3 sec   (6968 perm/sec)   p_kst 5.365000e-02   p_cons 4.896500e-01   p_joint 6.225000e-02

Joint ci ratio: 8.775248e-02	ci left: 5.962343e-02	ci right 6.512837e-02	k: 1870	n:30000
Cons ci ratio: 2.298835e-02	ci left: 4.864938e-01	ci right 4.978411e-01	k: 14765	n:30000
KS ci ratio: 9.478754e-02	ci left: 5.137128e-02	ci right 5.651553e-02	k: 1617	n:30000
RCHY1   30000 perm   5 sec   (6601 perm/sec)   p_kst 5.390000e-02   p_cons 4.921667e-01   p_joint 6.233333e-02

Outputting figure to mutsig2_images.part000000000145/RCHY1.2_822_30000_0.0539_0.49217_0.062333.png
                gene_name: RCHY1
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.065 

Current progress: 81 percent done.
RCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.688045e-02	ci left: 8.363308e-01	ci right 8.506684e-01	k: 8436	n:10000
Cons ci ratio: 3.746868e-02	ci left: 5.126548e-01	ci right 5.323321e-01	k: 5225	n:10000
KS ci ratio: 2.357332e-02	ci left: 7.256263e-01	ci right 7.430370e-01	k: 7344	n:10000
RCL1   10000 perm   1 sec   (7743 perm/sec)   p_kst 7.344000e-01   p_cons 5.225000e-01   p_joint 8.436000e-01

Outputting figure to mutsig2_images.part000000000145/RCL1.2_1158_10000_0.7344_0.5225_0.8436.png
                gene_name: RCL1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 83 percent done.
RCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.783046e-02	ci left: 1.587554e-01	ci right 1.734397e-01	k: 1660	n:10000
Cons ci ratio: 3.653334e-02	ci left: 5.252653e-01	ci right 5.449142e-01	k: 5351	n:10000
KS ci ratio: 9.353182e-02	ci left: 1.423679e-01	ci right 1.564370e-01	k: 1493	n:10000
RCN1   10000 perm   1 sec   (7876 perm/sec)   p_kst 1.493000e-01   p_cons 5.351000e-01   p_joint 1.660000e-01

Outputting figure to mutsig2_images.part000000000145/RCN1.2_1020_10000_0.1493_0.5351_0.166.png
                gene_name: RCN1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 85 percent done.
RCN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.657249e-02	ci left: 8.412196e-01	ci right 8.553769e-01	k: 8484	n:10000
Cons ci ratio: 1.218871e-02	ci left: 9.061740e-01	ci right 9.173848e-01	k: 9119	n:10000
KS ci ratio: 7.323371e-02	ci left: 2.144784e-01	ci right 2.308835e-01	k: 2226	n:10000
RCN3   10000 perm   1 sec   (8172 perm/sec)   p_kst 2.226000e-01   p_cons 9.119000e-01   p_joint 8.484000e-01

Outputting figure to mutsig2_images.part000000000145/RCN3.2_1011_10000_0.2226_0.9119_0.8484.png
                gene_name: RCN3
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 87 percent done.
RCOR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.532587e-02	ci left: 2.050098e-01	ci right 2.211576e-01	k: 2130	n:10000
Cons ci ratio: 8.392110e-02	ci left: 1.715307e-01	ci right 1.866567e-01	k: 1790	n:10000
KS ci ratio: 6.511594e-02	ci left: 2.572598e-01	ci right 2.746767e-01	k: 2659	n:10000
RCOR2   10000 perm   1 sec   (7775 perm/sec)   p_kst 2.659000e-01   p_cons 1.790000e-01   p_joint 2.130000e-01

Outputting figure to mutsig2_images.part000000000145/RCOR2.2_1620_10000_0.2659_0.179_0.213.png
                gene_name: RCOR2
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 88 percent done.
RD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.644352e-02	ci left: 8.432573e-01	ci right 8.573380e-01	k: 8504	n:10000
KS ci ratio: 1.002557e-01	ci left: 1.259128e-01	ci right 1.393020e-01	k: 1325	n:10000
RD3   10000 perm   1 sec   (8111 perm/sec)   p_kst 1.325000e-01   p_cons 8.504000e-01   p_joint 1

Joint ci ratio: 2.259556e-02	ci left: 5.939234e-01	ci right 6.075473e-01	k: 12015	n:20000
Cons ci ratio: 1.253178e-02	ci left: 8.250248e-01	ci right 8.354790e-01	k: 16606	n:20000
KS ci ratio: 7.197603e-02	ci left: 1.244821e-01	ci right 1.338260e-01	k: 2582	n:20000
RD3   20000 perm   3 sec   (7090 perm/sec)   p_kst 1.291000e-01   p_cons 8.303000e-01   p_joint 6.007500e-01

Outputting figure to mutsig2_images.part000000000145/RD3.2_596_20000_0.1291_0.8303_0.60075.png
                gene_name: RD3
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 90 percent done.
REG1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.353104e-02	ci left: 7.263334e-01	ci right 7.437295e-01	k: 7351	n:10000
Cons ci ratio: 5.268928e-02	ci left: 3.468072e-01	ci right 3.656766e-01	k: 3562	n:10000
KS ci ratio: 5.513094e-02	ci left: 3.264433e-01	ci right 3.450525e-01	k: 3357	n:10000
REG1B   10000 perm   1 sec   (8531 perm/sec)   p_kst 3.357000e-01   p_cons 3.562000e-01   p_joint 7.351000e-01

Outputting figure to mutsig2_images.part000000000145/REG1B.2_521_10000_0.3357_0.3562_0.7351.png
                gene_name: REG1B
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 92 percent done.
RELA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.343032e-02	ci left: 8.888262e-01	ci right 9.009427e-01	k: 8950	n:10000
KS ci ratio: 1.627524e-02	ci left: 8.459069e-01	ci right 8.598868e-01	k: 8530	n:10000
RELA   10000 perm   1 sec   (7393 perm/sec)   p_kst 8.530000e-01   p_cons 8.950000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000145/RELA.2_1700_10000_0.853_0.895_1.png
                gene_name: RELA
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
RELL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.883135e-02	ci left: 2.363980e-01	ci right 2.533508e-01	k: 2448	n:10000
Cons ci ratio: 8.455437e-02	ci left: 1.693677e-01	ci right 1.844210e-01	k: 1768	n:10000
KS ci ratio: 5.424714e-03	ci left: 9.784504e-01	ci right 9.838641e-01	k: 9813	n:10000
RELL2   10000 perm   1 sec   (8083 perm/sec)   p_kst 9.813000e-01   p_cons 1.768000e-01   p_joint 2.448000e-01

Outputting figure to mutsig2_images.part000000000145/RELL2.2_936_10000_0.9813_0.1768_0.2448.png
                gene_name: RELL2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 96 percent done.
RELT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.418244e-02	ci left: 8.778686e-01	ci right 8.905067e-01	k: 8843	n:10000
Cons ci ratio: 3.266670e-03	ci left: 9.913872e-01	ci right 9.947158e-01	k: 9932	n:10000
KS ci ratio: 4.089238e-02	ci left: 4.689664e-01	ci right 4.886460e-01	k: 4788	n:10000
RELT   10000 perm   1 sec   (7516 perm/sec)   p_kst 4.788000e-01   p_cons 9.932000e-01   p_joint 8.843000e-01

Outputting figure to mutsig2_images.part000000000145/RELT.2_1333_10000_0.4788_0.9932_0.8843.png
                gene_name: RELT
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 98 percent done.
REM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.265589e-02	ci left: 7.409867e-01	ci right 7.580678e-01	k: 7496	n:10000
Cons ci ratio: 2.307221e-02	ci left: 7.340122e-01	ci right 7.512462e-01	k: 7427	n:10000
KS ci ratio: 8.717051e-02	ci left: 1.608181e-01	ci right 1.755758e-01	k: 1681	n:10000
REM1   10000 perm   1 sec   (7844 perm/sec)   p_kst 1.681000e-01   p_cons 7.427000e-01   p_joint 7.496000e-01

Outputting figure to mutsig2_images.part000000000145/REM1.2_913_10000_0.1681_0.7427_0.7496.png
                gene_name: REM1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000145
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 145 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1702>
Subject: Job 9894109: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1702>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000146> was used as the working directory.
Started at Sat Oct  6 00:27:13 2012
Results reported at Sat Oct  6 03:30:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000146.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000146.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 146  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000146.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11151.09 sec.
    Max Memory :      3628 MB
    Max Swap   :      5984 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
146
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 146
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 146: processing genes 13073 - 13162
Calculating significance of each gene.
Using projection method.
13073	REXO1	1
13074	REXO2	1
13075	REXO4	6.760616e-01
13076	RFC1	2.008137e-01
13077	RFC2	1
13078	RFC3	1
13079	RFC4	5.854383e-01
13080	RFC5	5.242767e-01
13081	RFESD	5.364112e-01
13082	RFFL	6.457960e-01
13083	RFK	1
13084	RFNG	1
13085	RFPL1	1
13086	RFPL2	8.765099e-01
13087	RFPL3	6.964386e-01
13088	RFPL4B	5.039861e-01
13089	RFT1	1
13090	RFTN1	1.478367e-01
13091	RFTN2	1.977383e-01
13092	RFWD2	2.521451e-01
13093	RFWD3	8.274465e-01
13094	RFX1	1
13095	RFX2	7.772576e-01
13096	RFX3	2.202483e-01
13097	RFX4	6.366332e-01
13098	RFX5	8.431798e-01
13099	RFX6	4.262243e-01
13100	RFX7	8.980908e-01
13101	RFXANK	1
In gene RFXAP the following bins exceed PROBCAP:
    COAD-AA-3529	categ 6	N = 598     n = 1	mu =   2.41e-07
13102	RFXAP	2.425273e-01
13103	RG9MTD1	4.978356e-01
13104	RG9MTD2	2.309900e-02
13105	RG9MTD3	7.950533e-01
13106	RGAG1	9.490220e-02
13107	RGAG4	3.059182e-01
13108	RGL1	1.442323e-01
13109	RGL2	1
13110	RGL3	9.486841e-01
13111	RGL4	3.602494e-01
13112	RGMA	1
13113	RGMB	1.310875e-01
13114	RGN	6.287431e-01
13115	RGNEF	9.345548e-01
13116	RGP1	7.478366e-01
13117	RGR	2.485550e-01
13118	RGS1	4.280946e-01
13119	RGS10	5.220130e-01
13120	RGS11	1
13121	RGS12	6.784932e-01
13122	RGS13	1.491328e-02
13123	RGS14	8.380117e-01
13124	RGS16	2.675927e-01
13125	RGS17	2.803266e-01
13126	RGS18	1.752457e-01
13127	RGS19	1
13128	RGS2	8.151685e-02
13129	RGS20	1.463730e-01
13130	RGS21	2.215183e-01
13131	RGS22	6.473542e-01
13132	RGS3	7.246394e-01
13133	RGS4	2.045220e-01
13134	RGS5	6.123461e-01
13135	RGS6	2.727012e-01
13136	RGS7	1.019378e-01
13137	RGS7BP	2.470004e-01
13138	RGS8	5.641955e-01
13139	RGS9	1.418618e-01
13140	RGS9BP	1
13141	RHAG	6.447014e-01
13142	RHBDD1	2.633656e-02
13143	RHBDD2	1
13144	RHBDD3	1
13145	RHBDF1	9.745891e-01
13146	RHBDF2	6.093216e-01
13147	RHBDL1	1
13148	RHBDL2	1
13149	RHBDL3	2.288397e-01
13150	RHBG	5.116816e-01
13151	RHCE	2.362026e-01
13152	RHCG	3.211217e-01
13153	RHD	1.125680e-01
13154	RHEB	1
13155	RHEBL1	4.803298e-01
13156	RHO	3.798480e-01
13157	RHOA	1.703835e-03
13158	RHOB	1
13159	RHOBTB1	4.213620e-01
13160	RHOBTB2	5.220385e-01
13161	RHOBTB3	5.402021e-01
13162	RHOC	2.608327e-01
Done

Running MutSig 2:
Scatter job 146: processing genes 13073 - 13162
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RFC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.562101e-02	ci left: 8.561050e-01	ci right 8.696829e-01	k: 8630	n:10000
KS ci ratio: 1.044305e-02	ci left: 9.287493e-01	ci right 9.385962e-01	k: 9338	n:10000
RFC1   10000 perm   3 sec   (3415 perm/sec)   p_kst 9.338000e-01   p_cons 8.630000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RFC1.14_3544_10000_0.9338_0.863_1.png
                gene_name: RFC1
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
RFX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.887085e-01	ci left: 1.548531e-02	ci right 2.080068e-02	k: 180	n:10000
Cons ci ratio: 1.095497e-01	ci left: 1.072486e-01	ci right 1.197776e-01	k: 1134	n:10000
KS ci ratio: 4.284655e-01	ci left: 6.526864e-03	ci right 1.016828e-02	k: 82	n:10000
RFX6   10000 perm   2 sec   (4795 perm/sec)   p_kst 8.200000e-03   p_cons 1.134000e-01   p_joint 1.800000e-02

Joint ci ratio: 1.863283e-01	ci left: 1.963004e-02	ci right 2.371068e-02	k: 432	n:20000
Cons ci ratio: 7.733037e-02	ci left: 1.094302e-01	ci right 1.182824e-01	k: 2276	n:20000
KS ci ratio: 3.067269e-01	ci left: 6.858491e-03	ci right 9.387653e-03	k: 161	n:20000
RFX6   20000 perm   5 sec   (4392 perm/sec)   p_kst 8.050000e-03   p_cons 1.138000e-01   p_joint 2.160000e-02

Joint ci ratio: 1.660694e-01	ci left: 1.671749e-02	ci right 1.977682e-02	k: 546	n:30000
Cons ci ratio: 6.253758e-02	ci left: 1.121669e-01	ci right 1.194410e-01	k: 3473	n:30000
KS ci ratio: 2.439484e-01	ci left: 7.492322e-03	ci right 9.604510e-03	k: 255	n:30000
RFX6   30000 perm   7 sec   (4237 perm/sec)   p_kst 8.500000e-03   p_cons 1.157667e-01   p_joint 1.820000e-02

Joint ci ratio: 1.535832e-01	ci left: 1.479310e-02	ci right 1.727788e-02	k: 640	n:40000
Cons ci ratio: 5.629125e-02	ci left: 1.050731e-01	ci right 1.111839e-01	k: 4324	n:40000
KS ci ratio: 2.126320e-01	ci left: 7.528943e-03	ci right 9.343505e-03	k: 336	n:40000
RFX6   40000 perm   10 sec   (4128 perm/sec)   p_kst 8.400000e-03   p_cons 1.081000e-01   p_joint 1.600000e-02

Joint ci ratio: 1.460653e-01	ci left: 1.316194e-02	ci right 1.525502e-02	k: 709	n:50000
Cons ci ratio: 5.038118e-02	ci left: 1.052725e-01	ci right 1.107331e-01	k: 5399	n:50000
KS ci ratio: 1.852053e-01	ci left: 8.057227e-03	ci right 9.720544e-03	k: 443	n:50000
RFX6   50000 perm   12 sec   (4034 perm/sec)   p_kst 8.860000e-03   p_cons 1.079800e-01   p_joint 1.418000e-02

Joint ci ratio: 1.296819e-01	ci left: 1.402644e-02	ci right 1.598755e-02	k: 899	n:60000
Cons ci ratio: 4.396734e-02	ci left: 1.144054e-01	ci right 1.195651e-01	k: 7018	n:60000
KS ci ratio: 1.700049e-01	ci left: 8.036275e-03	ci right 9.545148e-03	k: 526	n:60000
RFX6   60000 perm   15 sec   (3959 perm/sec)   p_kst 8.766667e-03   p_cons 1.169667e-01   p_joint 1.498333e-02

Joint ci ratio: 1.214195e-01	ci left: 1.377990e-02	ci right 1.557495e-02	k: 1026	n:70000
Cons ci ratio: 4.072795e-02	ci left: 1.144861e-01	ci right 1.192600e-01	k: 8180	n:70000
KS ci ratio: 1.590777e-01	ci left: 7.915539e-03	ci right 9.297086e-03	k: 601	n:70000
RFX6   70000 perm   18 sec   (3889 perm/sec)   p_kst 8.585714e-03   p_cons 1.168571e-01   p_joint 1.465714e-02

Joint ci ratio: 1.280008e-01	ci left: 1.084530e-02	ci right 1.234043e-02	k: 926	n:80000
Cons ci ratio: 3.919210e-02	ci left: 1.089674e-01	ci right 1.133358e-01	k: 8891	n:80000
KS ci ratio: 1.499065e-01	ci left: 7.839369e-03	ci right 9.121659e-03	k: 677	n:80000
RFX6   80000 perm   21 sec   (3825 perm/sec)   p_kst 8.462500e-03   p_cons 1.111375e-01   p_joint 1.157500e-02

Joint ci ratio: 1.273918e-01	ci left: 9.747475e-03	ci right 1.108436e-02	k: 936	n:90000
Cons ci ratio: 3.693096e-02	ci left: 1.091972e-01	ci right 1.133168e-01	k: 10012	n:90000
KS ci ratio: 1.412166e-01	ci left: 7.889117e-03	ci right 9.098439e-03	k: 763	n:90000
RFX6   90000 perm   24 sec   (3766 perm/sec)   p_kst 8.477778e-03   p_cons 1.112444e-01   p_joint 1.040000e-02

Joint ci ratio: 1.281509e-01	ci left: 8.675613e-03	ci right 9.873109e-03	k: 926	n:100000
Cons ci ratio: 3.515065e-02	ci left: 1.086624e-01	ci right 1.125602e-01	k: 11060	n:100000
KS ci ratio: 1.353344e-01	ci left: 7.756650e-03	ci right 8.892146e-03	k: 831	n:100000
RFX6   100000 perm   27 sec   (3709 perm/sec)   p_kst 8.310000e-03   p_cons 1.106000e-01   p_joint 9.260000e-03

Joint ci ratio: 1.058730e-01	ci left: 1.165698e-02	ci right 1.296892e-02	k: 1353	n:110000
Cons ci ratio: 3.356464e-02	ci left: 1.084635e-01	ci right 1.121752e-01	k: 12134	n:110000
KS ci ratio: 1.292644e-01	ci left: 7.754708e-03	ci right 8.835094e-03	k: 911	n:110000
RFX6   110000 perm   30 sec   (3653 perm/sec)   p_kst 8.281818e-03   p_cons 1.103091e-01   p_joint 1.230000e-02

Joint ci ratio: 9.456716e-02	ci left: 1.344865e-02	ci right 1.479165e-02	k: 1693	n:120000
Cons ci ratio: 3.211279e-02	ci left: 1.086818e-01	ci right 1.122371e-01	k: 13254	n:120000
KS ci ratio: 1.228254e-01	ci left: 7.899445e-03	ci right 8.941188e-03	k: 1009	n:120000
RFX6   120000 perm   33 sec   (3601 perm/sec)   p_kst 8.408333e-03   p_cons 1.104500e-01   p_joint 1.410833e-02

Joint ci ratio: 9.269759e-02	ci left: 1.293983e-02	ci right 1.420508e-02	k: 1763	n:130000
Cons ci ratio: 3.084161e-02	ci left: 1.088235e-01	ci right 1.122400e-01	k: 14368	n:130000
KS ci ratio: 1.179073e-01	ci left: 7.933428e-03	ci right 8.934839e-03	k: 1095	n:130000
RFX6   130000 perm   37 sec   (3551 perm/sec)   p_kst 8.423077e-03   p_cons 1.105231e-01   p_joint 1.356154e-02

Joint ci ratio: 7.760182e-02	ci left: 1.720489e-02	ci right 1.860089e-02	k: 2505	n:140000
Cons ci ratio: 2.968125e-02	ci left: 1.091390e-01	ci right 1.124343e-01	k: 15509	n:140000
KS ci ratio: 1.138280e-01	ci left: 7.921620e-03	ci right 8.884621e-03	k: 1175	n:140000
RFX6   140000 perm   40 sec   (3502 perm/sec)   p_kst 8.392857e-03   p_cons 1.107786e-01   p_joint 1.789286e-02

Joint ci ratio: 7.852999e-02	ci left: 1.569791e-02	ci right 1.698755e-02	k: 2450	n:150000
Cons ci ratio: 2.870966e-02	ci left: 1.089574e-01	ci right 1.121377e-01	k: 16581	n:150000
KS ci ratio: 1.103221e-01	ci left: 7.885968e-03	ci right 8.813187e-03	k: 1251	n:150000
RFX6   150000 perm   43 sec   (3453 perm/sec)   p_kst 8.340000e-03   p_cons 1.105400e-01   p_joint 1.633333e-02

Joint ci ratio: 7.630980e-02	ci left: 1.560547e-02	ci right 1.684965e-02	k: 2595	n:160000
Cons ci ratio: 2.778695e-02	ci left: 1.090858e-01	ci right 1.121658e-01	k: 17699	n:160000
KS ci ratio: 1.067974e-01	ci left: 7.903845e-03	ci right 8.801607e-03	k: 1335	n:160000
RFX6   160000 perm   47 sec   (3407 perm/sec)   p_kst 8.343750e-03   p_cons 1.106188e-01   p_joint 1.621875e-02

Joint ci ratio: 8.107547e-02	ci left: 1.301443e-02	ci right 1.411989e-02	k: 2305	n:170000
Cons ci ratio: 2.694945e-02	ci left: 1.091888e-01	ci right 1.121774e-01	k: 18815	n:170000
KS ci ratio: 1.037378e-01	ci left: 7.897110e-03	ci right 8.766841e-03	k: 1415	n:170000
RFX6   170000 perm   51 sec   (3362 perm/sec)   p_kst 8.323529e-03   p_cons 1.106765e-01   p_joint 1.355882e-02

Joint ci ratio: 8.036827e-02	ci left: 1.251990e-02	ci right 1.357364e-02	k: 2347	n:180000
Cons ci ratio: 2.617378e-02	ci left: 1.093535e-01	ci right 1.122591e-01	k: 19944	n:180000
KS ci ratio: 1.015794e-01	ci left: 7.788547e-03	ci right 8.627408e-03	k: 1476	n:180000
RFX6   180000 perm   54 sec   (3307 perm/sec)   p_kst 8.200000e-03   p_cons 1.108000e-01   p_joint 1.303889e-02

Joint ci ratio: 7.839228e-02	ci left: 1.247999e-02	ci right 1.350337e-02	k: 2467	n:190000
Cons ci ratio: 2.548390e-02	ci left: 1.093291e-01	ci right 1.121564e-01	k: 21040	n:190000
KS ci ratio: 9.887188e-02	ci left: 7.799386e-03	ci right 8.615726e-03	k: 1558	n:190000
RFX6   190000 perm   58 sec   (3266 perm/sec)   p_kst 8.200000e-03   p_cons 1.107368e-01   p_joint 1.298421e-02

Outputting figure to mutsig2_images.part000000000146/RFX6.11_2863_190000_0.0082_0.11074_0.012984.png
                gene_name: RFX6
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.0082 
        ci_ks_bounds_left: 0.0078 
       ci_ks_bounds_right: 0.0086 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.014 

Current progress: 4 percent done.
RGAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.454149e-02	ci left: 7.094718e-01	ci right 7.272009e-01	k: 7184	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
RGAG1   10000 perm   2 sec   (4581 perm/sec)   p_kst 1   p_cons 7.184000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RGAG1.11_4175_10000_1_0.7184_1.png
                gene_name: RGAG1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
RGS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.030745e-02	ci left: 9.304039e-01	ci right 9.401406e-01	k: 9354	n:10000
KS ci ratio: 1.103001e-02	ci left: 9.214164e-01	ci right 9.317334e-01	k: 9267	n:10000
RGS3   10000 perm   2 sec   (4700 perm/sec)   p_kst 9.267000e-01   p_cons 9.354000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RGS3.10_4373_10000_0.9267_0.9354_1.png
                gene_name: RGS3
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
RGL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.098851e-02	ci left: 7.689140e-01	ci right 7.853243e-01	k: 7772	n:10000
Cons ci ratio: 2.638395e-02	ci left: 6.790170e-01	ci right 6.972732e-01	k: 6882	n:10000
KS ci ratio: 3.544597e-02	ci left: 5.402861e-01	ci right 5.598847e-01	k: 5501	n:10000
RGL1   10000 perm   2 sec   (5208 perm/sec)   p_kst 5.501000e-01   p_cons 6.882000e-01   p_joint 7.772000e-01

Outputting figure to mutsig2_images.part000000000146/RGL1.8_2484_10000_0.5501_0.6882_0.7772.png
                gene_name: RGL1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 9 percent done.
RGS22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.225664e-02	ci left: 2.749777e-01	ci right 2.927484e-01	k: 2838	n:10000
Cons ci ratio: 6.994737e-02	ci left: 2.305695e-01	ci right 2.473828e-01	k: 2389	n:10000
KS ci ratio: 7.724115e-02	ci left: 1.968288e-01	ci right 2.127436e-01	k: 2047	n:10000
RGS22   10000 perm   2 sec   (4661 perm/sec)   p_kst 2.047000e-01   p_cons 2.389000e-01   p_joint 2.838000e-01

Outputting figure to mutsig2_images.part000000000146/RGS22.8_3903_10000_0.2047_0.2389_0.2838.png
                gene_name: RGS22
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 11 percent done.
RGS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.900626e-02	ci left: 2.970746e-01	ci right 3.152384e-01	k: 3061	n:10000
Cons ci ratio: 5.759258e-02	ci left: 3.073885e-01	ci right 3.257185e-01	k: 3165	n:10000
KS ci ratio: 6.470164e-02	ci left: 2.597333e-01	ci right 2.772017e-01	k: 2684	n:10000
RGS12   10000 perm   2 sec   (4379 perm/sec)   p_kst 2.684000e-01   p_cons 3.165000e-01   p_joint 3.061000e-01

Outputting figure to mutsig2_images.part000000000146/RGS12.7_4487_10000_0.2684_0.3165_0.3061.png
                gene_name: RGS12
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 13 percent done.
RGS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.175301e-01	ci left: 9.418721e-02	ci right 1.060469e-01	k: 1000	n:10000
Cons ci ratio: 2.960179e-02	ci left: 6.272853e-01	ci right 6.462349e-01	k: 6368	n:10000
KS ci ratio: 1.736201e-01	ci left: 4.427577e-02	ci right 5.278970e-02	k: 484	n:10000
RGS9   10000 perm   2 sec   (5794 perm/sec)   p_kst 4.840000e-02   p_cons 6.368000e-01   p_joint 1.000000e-01

Joint ci ratio: 8.522918e-02	ci left: 9.155886e-02	ci right 9.975913e-02	k: 1912	n:20000
Cons ci ratio: 2.080380e-02	ci left: 6.329513e-01	ci right 6.463081e-01	k: 12793	n:20000
KS ci ratio: 1.203141e-01	ci left: 4.736004e-02	ci right 5.347151e-02	k: 1007	n:20000
RGS9   20000 perm   4 sec   (5162 perm/sec)   p_kst 5.035000e-02   p_cons 6.396500e-01   p_joint 9.560000e-02

Joint ci ratio: 7.097248e-02	ci left: 8.901476e-02	ci right 9.559777e-02	k: 2768	n:30000
Cons ci ratio: 1.684856e-02	ci left: 6.379494e-01	ci right 6.488228e-01	k: 19302	n:30000
KS ci ratio: 9.882319e-02	ci left: 4.736547e-02	ci right 5.232217e-02	k: 1494	n:30000
RGS9   30000 perm   6 sec   (4937 perm/sec)   p_kst 4.980000e-02   p_cons 6.434000e-01   p_joint 9.226667e-02

Outputting figure to mutsig2_images.part000000000146/RGS9.7_2156_30000_0.0498_0.6434_0.092267.png
                gene_name: RGS9
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.096 

Current progress: 15 percent done.
RGNEF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.757768e-02	ci left: 1.595411e-01	ci right 1.742535e-01	k: 1668	n:10000
Cons ci ratio: 3.325128e-02	ci left: 5.717587e-01	ci right 5.911938e-01	k: 5815	n:10000
KS ci ratio: 1.364833e-01	ci left: 7.097701e-02	ci right 8.147145e-02	k: 761	n:10000
RGNEF   10000 perm   2 sec   (4457 perm/sec)   p_kst 7.610000e-02   p_cons 5.815000e-01   p_joint 1.668000e-01

Joint ci ratio: 7.574393e-02	ci left: 1.136089e-01	ci right 1.226025e-01	k: 2361	n:20000
Cons ci ratio: 2.349667e-02	ci left: 5.749775e-01	ci right 5.886987e-01	k: 11637	n:20000
KS ci ratio: 1.003010e-01	ci left: 6.738054e-02	ci right 7.454480e-02	k: 1418	n:20000
RGNEF   20000 perm   5 sec   (4095 perm/sec)   p_kst 7.090000e-02   p_cons 5.818500e-01   p_joint 1.180500e-01

Joint ci ratio: 5.770017e-02	ci left: 1.294727e-01	ci right 1.371984e-01	k: 3999	n:30000
Cons ci ratio: 1.951911e-02	ci left: 5.678132e-01	ci right 5.790392e-01	k: 17203	n:30000
KS ci ratio: 8.102858e-02	ci left: 6.942693e-02	ci right 7.532287e-02	k: 2170	n:30000
RGNEF   30000 perm   8 sec   (3953 perm/sec)   p_kst 7.233333e-02   p_cons 5.734333e-01   p_joint 1.333000e-01

Outputting figure to mutsig2_images.part000000000146/RGNEF.6_5340_30000_0.072333_0.57343_0.1333.png
                gene_name: RGNEF
               theta_stop: 0.081 
                    nperm: 30000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 16 percent done.
RGS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.144615e-02	ci left: 5.987528e-01	ci right 6.179840e-01	k: 6084	n:10000
Cons ci ratio: 3.605153e-02	ci left: 5.318734e-01	ci right 5.515023e-01	k: 5417	n:10000
KS ci ratio: 4.730797e-02	ci left: 3.973494e-01	ci right 4.167048e-01	k: 4070	n:10000
RGS7   10000 perm   2 sec   (5681 perm/sec)   p_kst 4.070000e-01   p_cons 5.417000e-01   p_joint 6.084000e-01

Outputting figure to mutsig2_images.part000000000146/RGS7.6_1532_10000_0.407_0.5417_0.6084.png
                gene_name: RGS7
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 18 percent done.
RFTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.405695e-02	ci left: 7.175473e-01	ci right 7.351207e-01	k: 7264	n:10000
Cons ci ratio: 1.921421e-02	ci left: 7.984155e-01	ci right 8.140057e-01	k: 8063	n:10000
KS ci ratio: 4.177929e-02	ci left: 4.582806e-01	ci right 4.779380e-01	k: 4681	n:10000
RFTN1   10000 perm   2 sec   (5702 perm/sec)   p_kst 4.681000e-01   p_cons 8.063000e-01   p_joint 7.264000e-01

Outputting figure to mutsig2_images.part000000000146/RFTN1.5_1773_10000_0.4681_0.8063_0.7264.png
                gene_name: RFTN1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 20 percent done.
RFWD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.102367e-02	ci left: 4.673682e-01	ci right 4.870451e-01	k: 4772	n:10000
Cons ci ratio: 3.714711e-02	ci left: 5.169577e-01	ci right 5.366267e-01	k: 5268	n:10000
KS ci ratio: 5.621107e-02	ci left: 3.179062e-01	ci right 3.363946e-01	k: 3271	n:10000
RFWD2   10000 perm   2 sec   (5424 perm/sec)   p_kst 3.271000e-01   p_cons 5.268000e-01   p_joint 4.772000e-01

Outputting figure to mutsig2_images.part000000000146/RFWD2.5_2276_10000_0.3271_0.5268_0.4772.png
                gene_name: RFWD2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 22 percent done.
RFX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.267076e-02	ci left: 4.477990e-01	ci right 4.674257e-01	k: 4576	n:10000
Cons ci ratio: 1.327272e-02	ci left: 8.910815e-01	ci right 9.030861e-01	k: 8972	n:10000
KS ci ratio: 8.389257e-02	ci left: 1.716291e-01	ci right 1.867583e-01	k: 1791	n:10000
RFX3   10000 perm   2 sec   (5201 perm/sec)   p_kst 1.791000e-01   p_cons 8.972000e-01   p_joint 4.576000e-01

Outputting figure to mutsig2_images.part000000000146/RFX3.5_2470_10000_0.1791_0.8972_0.4576.png
                gene_name: RFX3
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 24 percent done.
RG9MTD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.163479e-02	ci left: 9.135826e-01	ci right 9.243718e-01	k: 9191	n:10000
Cons ci ratio: 5.739775e-03	ci left: 9.761027e-01	ci right 9.818135e-01	k: 9791	n:10000
KS ci ratio: 2.735981e-02	ci left: 6.631019e-01	ci right 6.815976e-01	k: 6724	n:10000
RG9MTD2   10000 perm   2 sec   (5721 perm/sec)   p_kst 6.724000e-01   p_cons 9.791000e-01   p_joint 9.191000e-01

Outputting figure to mutsig2_images.part000000000146/RG9MTD2.5_1048_10000_0.6724_0.9791_0.9191.png
                gene_name: RG9MTD2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 25 percent done.
RHBDF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.410571e-02	ci left: 5.593253e-01	ci right 5.788345e-01	k: 5691	n:10000
Cons ci ratio: 2.958900e-02	ci left: 6.274864e-01	ci right 6.464337e-01	k: 6370	n:10000
KS ci ratio: 5.152669e-02	ci left: 3.570460e-01	ci right 3.760318e-01	k: 3665	n:10000
RHBDF2   10000 perm   2 sec   (5121 perm/sec)   p_kst 3.665000e-01   p_cons 6.370000e-01   p_joint 5.691000e-01

Outputting figure to mutsig2_images.part000000000146/RHBDF2.5_2639_10000_0.3665_0.637_0.5691.png
                gene_name: RHBDF2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 27 percent done.
RHBDL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.235896e-01	ci left: 8.572423e-02	ci right 9.711508e-02	k: 913	n:10000
Cons ci ratio: 1.016190e-02	ci left: 9.321629e-01	ci right 9.417806e-01	k: 9371	n:10000
KS ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
RHBDL3   10000 perm   2 sec   (5942 perm/sec)   p_kst 9.400000e-03   p_cons 9.371000e-01   p_joint 9.130000e-02

Joint ci ratio: 1.374995e-01	ci left: 3.635916e-02	ci right 4.177590e-02	k: 780	n:20000
Cons ci ratio: 7.298433e-03	ci left: 9.316996e-01	ci right 9.385733e-01	k: 18704	n:20000
KS ci ratio: 2.984783e-01	ci left: 7.274556e-03	ci right 9.871356e-03	k: 170	n:20000
RHBDL3   20000 perm   4 sec   (5320 perm/sec)   p_kst 8.500000e-03   p_cons 9.352000e-01   p_joint 3.900000e-02

Joint ci ratio: 1.119954e-01	ci left: 3.703198e-02	ci right 4.145782e-02	k: 1176	n:30000
Cons ci ratio: 5.988011e-03	ci left: 9.317434e-01	ci right 9.373721e-01	k: 28038	n:30000
KS ci ratio: 2.444304e-01	ci left: 7.461014e-03	ci right 9.569162e-03	k: 254	n:30000
RHBDL3   30000 perm   6 sec   (5083 perm/sec)   p_kst 8.466667e-03   p_cons 9.346000e-01   p_joint 3.920000e-02

Joint ci ratio: 9.252026e-02	ci left: 4.095944e-02	ci right 4.495726e-02	k: 1717	n:40000
Cons ci ratio: 5.001823e-03	ci left: 9.364828e-01	ci right 9.412032e-01	k: 37555	n:40000
KS ci ratio: 2.196418e-01	ci left: 7.032159e-03	ci right 8.790409e-03	k: 315	n:40000
RHBDL3   40000 perm   8 sec   (4939 perm/sec)   p_kst 7.875000e-03   p_cons 9.388750e-01   p_joint 4.292500e-02

Joint ci ratio: 1.275494e-01	ci left: 1.735627e-02	ci right 1.974009e-02	k: 926	n:50000
Cons ci ratio: 4.450791e-03	ci left: 9.373340e-01	ci right 9.415348e-01	k: 46973	n:50000
KS ci ratio: 1.891120e-01	ci left: 7.713965e-03	ci right 9.343867e-03	k: 425	n:50000
RHBDL3   50000 perm   10 sec   (4802 perm/sec)   p_kst 8.500000e-03   p_cons 9.394600e-01   p_joint 1.852000e-02

Joint ci ratio: 1.052023e-01	ci left: 2.142558e-02	ci right 2.382091e-02	k: 1356	n:60000
Cons ci ratio: 4.287760e-03	ci left: 9.310039e-01	ci right 9.350208e-01	k: 55982	n:60000
KS ci ratio: 1.738743e-01	ci left: 7.669311e-03	ci right 9.145498e-03	k: 503	n:60000
RHBDL3   60000 perm   13 sec   (4685 perm/sec)   p_kst 8.383333e-03   p_cons 9.330333e-01   p_joint 2.260000e-02

Joint ci ratio: 8.808392e-02	ci left: 2.630101e-02	ci right 2.873837e-02	k: 1925	n:70000
Cons ci ratio: 3.968887e-03	ci left: 9.311806e-01	ci right 9.348977e-01	k: 65314	n:70000
KS ci ratio: 1.600188e-01	ci left: 7.819502e-03	ci right 9.193135e-03	k: 594	n:70000
RHBDL3   70000 perm   15 sec   (4585 perm/sec)   p_kst 8.485714e-03   p_cons 9.330571e-01   p_joint 2.750000e-02

Joint ci ratio: 8.422555e-02	ci left: 2.525102e-02	ci right 2.748350e-02	k: 2108	n:80000
Cons ci ratio: 3.714958e-03	ci left: 9.312202e-01	ci right 9.346984e-01	k: 74638	n:80000
KS ci ratio: 1.476179e-01	ci left: 8.092174e-03	ci right 9.393827e-03	k: 698	n:80000
RHBDL3   80000 perm   18 sec   (4493 perm/sec)   p_kst 8.725000e-03   p_cons 9.329750e-01   p_joint 2.635000e-02

Joint ci ratio: 9.206821e-02	ci left: 1.883463e-02	ci right 2.066318e-02	k: 1776	n:90000
Cons ci ratio: 3.494607e-03	ci left: 9.316054e-01	ci right 9.348777e-01	k: 83993	n:90000
KS ci ratio: 1.402022e-01	ci left: 8.007070e-03	ci right 9.224920e-03	k: 774	n:90000
RHBDL3   90000 perm   20 sec   (4410 perm/sec)   p_kst 8.600000e-03   p_cons 9.332556e-01   p_joint 1.973333e-02

Joint ci ratio: 7.908403e-02	ci left: 2.303081e-02	ci right 2.493693e-02	k: 2397	n:100000
Cons ci ratio: 3.306081e-03	ci left: 9.320392e-01	ci right 9.351356e-01	k: 93360	n:100000
KS ci ratio: 1.328607e-01	ci left: 8.056331e-03	ci right 9.212440e-03	k: 862	n:100000
RHBDL3   100000 perm   23 sec   (4333 perm/sec)   p_kst 8.620000e-03   p_cons 9.336000e-01   p_joint 2.397000e-02

Joint ci ratio: 7.185177e-02	ci left: 2.539801e-02	ci right 2.729980e-02	k: 2897	n:110000
Cons ci ratio: 3.151747e-03	ci left: 9.321310e-01	ci right 9.350824e-01	k: 102698	n:110000
KS ci ratio: 1.269681e-01	ci left: 8.045168e-03	ci right 9.144613e-03	k: 944	n:110000
RHBDL3   110000 perm   26 sec   (4255 perm/sec)   p_kst 8.581818e-03   p_cons 9.336182e-01   p_joint 2.633636e-02

Joint ci ratio: 6.952419e-02	ci left: 2.491031e-02	ci right 2.671271e-02	k: 3096	n:120000
Cons ci ratio: 3.019012e-03	ci left: 9.321345e-01	ci right 9.349611e-01	k: 112027	n:120000
KS ci ratio: 1.212021e-01	ci left: 8.117632e-03	ci right 9.172987e-03	k: 1036	n:120000
RHBDL3   120000 perm   29 sec   (4169 perm/sec)   p_kst 8.633333e-03   p_cons 9.335583e-01   p_joint 2.580000e-02

Joint ci ratio: 7.234666e-02	ci left: 2.128502e-02	ci right 2.289024e-02	k: 2870	n:130000
Cons ci ratio: 2.905700e-03	ci left: 9.319690e-01	ci right 9.346886e-01	k: 121334	n:130000
KS ci ratio: 1.174220e-01	ci left: 8.000637e-03	ci right 9.006087e-03	k: 1104	n:130000
RHBDL3   130000 perm   32 sec   (4036 perm/sec)   p_kst 8.492308e-03   p_cons 9.333385e-01   p_joint 2.207692e-02

Joint ci ratio: 7.240501e-02	ci left: 1.976410e-02	ci right 2.125585e-02	k: 2870	n:140000
Cons ci ratio: 2.798288e-03	ci left: 9.320958e-01	ci right 9.347148e-01	k: 130678	n:140000
KS ci ratio: 1.135363e-01	ci left: 7.963268e-03	ci right 8.928685e-03	k: 1181	n:140000
RHBDL3   140000 perm   35 sec   (3980 perm/sec)   p_kst 8.435714e-03   p_cons 9.334143e-01   p_joint 2.050000e-02

Joint ci ratio: 7.149669e-02	ci left: 1.894375e-02	ci right 2.035490e-02	k: 2946	n:150000
Cons ci ratio: 2.705156e-03	ci left: 9.320593e-01	ci right 9.345906e-01	k: 140000	n:150000
KS ci ratio: 1.095308e-01	ci left: 8.002695e-03	ci right 8.936454e-03	k: 1269	n:150000
RHBDL3   150000 perm   38 sec   (3924 perm/sec)   p_kst 8.460000e-03   p_cons 9.333333e-01   p_joint 1.964000e-02

Joint ci ratio: 7.258988e-02	ci left: 1.724981e-02	ci right 1.855524e-02	k: 2863	n:160000
Cons ci ratio: 2.626127e-03	ci left: 9.317702e-01	ci right 9.342266e-01	k: 149281	n:160000
KS ci ratio: 1.064764e-01	ci left: 7.952522e-03	ci right 8.852928e-03	k: 1343	n:160000
RHBDL3   160000 perm   41 sec   (3869 perm/sec)   p_kst 8.393750e-03   p_cons 9.330063e-01   p_joint 1.789375e-02

Joint ci ratio: 7.530775e-02	ci left: 1.509708e-02	ci right 1.628423e-02	k: 2666	n:170000
Cons ci ratio: 2.485668e-03	ci left: 9.348499e-01	ci right 9.371823e-01	k: 159124	n:170000
KS ci ratio: 1.035168e-01	ci left: 7.931497e-03	ci right 8.803042e-03	k: 1421	n:170000
RHBDL3   170000 perm   45 sec   (3817 perm/sec)   p_kst 8.358824e-03   p_cons 9.360235e-01   p_joint 1.568235e-02

Joint ci ratio: 7.426036e-02	ci left: 1.467801e-02	ci right 1.581546e-02	k: 2743	n:180000
Cons ci ratio: 2.417785e-03	ci left: 9.347755e-01	ci right 9.370438e-01	k: 168465	n:180000
KS ci ratio: 1.007911e-01	ci left: 7.913116e-03	ci right 8.758389e-03	k: 1499	n:180000
RHBDL3   180000 perm   48 sec   (3766 perm/sec)   p_kst 8.327778e-03   p_cons 9.359167e-01   p_joint 1.523889e-02

Joint ci ratio: 7.260426e-02	ci left: 1.456160e-02	ci right 1.566380e-02	k: 2870	n:190000
Cons ci ratio: 2.349800e-03	ci left: 9.349857e-01	ci right 9.371905e-01	k: 177858	n:190000
KS ci ratio: 9.855368e-02	ci left: 7.850729e-03	ci right 8.669644e-03	k: 1568	n:190000
RHBDL3   190000 perm   51 sec   (3716 perm/sec)   p_kst 8.252632e-03   p_cons 9.360947e-01   p_joint 1.510526e-02

Outputting figure to mutsig2_images.part000000000146/RHBDL3.5_1251_190000_0.0082526_0.93609_0.015105.png
                gene_name: RHBDL3
               theta_stop: 0.099 
                    nperm: 190000 
                     p_ks: 0.0083 
        ci_ks_bounds_left: 0.0079 
       ci_ks_bounds_right: 0.0087 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 29 percent done.
RHOA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.963916e-02	ci left: 3.744525e-01	ci right 3.936151e-01	k: 3840	n:10000
Cons ci ratio: 1.185194e-01	ci left: 9.272705e-02	ci right 1.045080e-01	k: 985	n:10000
KS ci ratio: 4.072075e-02	ci left: 4.710641e-01	ci right 4.907470e-01	k: 4809	n:10000
RHOA   10000 perm   2 sec   (6018 perm/sec)   p_kst 4.809000e-01   p_cons 9.850000e-02   p_joint 3.840000e-01

Joint ci ratio: 3.656058e-02	ci left: 3.582731e-01	ci right 3.716662e-01	k: 7299	n:20000
Cons ci ratio: 8.255917e-02	ci left: 9.710247e-02	ci right 1.055138e-01	k: 2025	n:20000
KS ci ratio: 2.932035e-02	ci left: 4.649609e-01	ci right 4.788472e-01	k: 9438	n:20000
RHOA   20000 perm   4 sec   (5388 perm/sec)   p_kst 4.719000e-01   p_cons 1.012500e-01   p_joint 3.649500e-01

Outputting figure to mutsig2_images.part000000000146/RHOA.5_598_20000_0.4719_0.10125_0.36495.png
                gene_name: RHOA
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 31 percent done.
RHOBTB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.767252e-02	ci left: 3.067933e-01	ci right 3.251140e-01	k: 3159	n:10000
Cons ci ratio: 6.148482e-02	ci left: 2.800289e-01	ci right 2.978941e-01	k: 2889	n:10000
KS ci ratio: 6.606290e-02	ci left: 2.517205e-01	ci right 2.690193e-01	k: 2603	n:10000
RHOBTB2   10000 perm   2 sec   (5796 perm/sec)   p_kst 2.603000e-01   p_cons 2.889000e-01   p_joint 3.159000e-01

Outputting figure to mutsig2_images.part000000000146/RHOBTB2.5_2305_10000_0.2603_0.2889_0.3159.png
                gene_name: RHOBTB2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 33 percent done.
RHOBTB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.693905e-02	ci left: 5.197599e-01	ci right 5.394228e-01	k: 5296	n:10000
Cons ci ratio: 4.043641e-02	ci left: 4.745607e-01	ci right 4.942484e-01	k: 4844	n:10000
KS ci ratio: 3.474977e-02	ci left: 5.501045e-01	ci right 5.696606e-01	k: 5599	n:10000
RHOBTB3   10000 perm   2 sec   (5652 perm/sec)   p_kst 5.599000e-01   p_cons 4.844000e-01   p_joint 5.296000e-01

Outputting figure to mutsig2_images.part000000000146/RHOBTB3.5_1884_10000_0.5599_0.4844_0.5296.png
                gene_name: RHOBTB3
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 35 percent done.
RFTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
Cons ci ratio: 4.310919e-01	ci left: 6.437624e-03	ci right 1.005764e-02	k: 81	n:10000
KS ci ratio: 3.954049e-02	ci left: 4.857530e-01	ci right 5.054495e-01	k: 4956	n:10000
RFTN2   10000 perm   2 sec   (5986 perm/sec)   p_kst 4.956000e-01   p_cons 8.100000e-03   p_joint 5.140000e-02

Joint ci ratio: 1.208834e-01	ci left: 4.692297e-02	ci right 5.300872e-02	k: 998	n:20000
Cons ci ratio: 3.039027e-01	ci left: 6.997074e-03	ci right 9.548992e-03	k: 164	n:20000
KS ci ratio: 2.809601e-02	ci left: 4.862475e-01	ci right 5.001544e-01	k: 9864	n:20000
RFTN2   20000 perm   4 sec   (5376 perm/sec)   p_kst 4.932000e-01   p_cons 8.200000e-03   p_joint 4.990000e-02

Joint ci ratio: 1.299606e-01	ci left: 2.751748e-02	ci right 3.137436e-02	k: 882	n:30000
Cons ci ratio: 2.425193e-01	ci left: 7.586271e-03	ci right 9.710531e-03	k: 258	n:30000
KS ci ratio: 2.304206e-02	ci left: 4.853274e-01	ci right 4.966743e-01	k: 14730	n:30000
RFTN2   30000 perm   6 sec   (5113 perm/sec)   p_kst 4.910000e-01   p_cons 8.600000e-03   p_joint 2.940000e-02

Joint ci ratio: 1.011686e-01	ci left: 3.434197e-02	ci right 3.802576e-02	k: 1446	n:40000
Cons ci ratio: 2.077153e-01	ci left: 7.908047e-03	ci right 9.764313e-03	k: 352	n:40000
KS ci ratio: 1.988951e-02	ci left: 4.877388e-01	ci right 4.975623e-01	k: 19706	n:40000
RFTN2   40000 perm   8 sec   (4923 perm/sec)   p_kst 4.926500e-01   p_cons 8.800000e-03   p_joint 3.615000e-02

Joint ci ratio: 8.830158e-02	ci left: 3.624312e-02	ci right 3.961080e-02	k: 1895	n:50000
Cons ci ratio: 1.854161e-01	ci left: 8.038148e-03	ci right 9.699627e-03	k: 442	n:50000
KS ci ratio: 1.782655e-02	ci left: 4.872286e-01	ci right 4.960124e-01	k: 24581	n:50000
RFTN2   50000 perm   10 sec   (4789 perm/sec)   p_kst 4.916200e-01   p_cons 8.840000e-03   p_joint 3.790000e-02

Joint ci ratio: 7.264480e-02	ci left: 4.459950e-02	ci right 4.797790e-02	k: 2776	n:60000
Cons ci ratio: 1.703313e-01	ci left: 8.004350e-03	ci right 9.510411e-03	k: 524	n:60000
KS ci ratio: 1.626810e-02	ci left: 4.877753e-01	ci right 4.957922e-01	k: 29507	n:60000
RFTN2   60000 perm   13 sec   (4672 perm/sec)   p_kst 4.917833e-01   p_cons 8.733333e-03   p_joint 4.626667e-02

Joint ci ratio: 7.100055e-02	ci left: 4.024505e-02	ci right 4.322166e-02	k: 2920	n:70000
Cons ci ratio: 1.577613e-01	ci left: 8.052777e-03	ci right 9.445546e-03	k: 611	n:70000
KS ci ratio: 1.504110e-02	ci left: 4.887468e-01	ci right 4.961681e-01	k: 34472	n:70000
RFTN2   70000 perm   15 sec   (4572 perm/sec)   p_kst 4.924571e-01   p_cons 8.728571e-03   p_joint 4.171429e-02

Joint ci ratio: 7.697433e-02	ci left: 3.019002e-02	ci right 3.261912e-02	k: 2511	n:80000
Cons ci ratio: 1.480459e-01	ci left: 8.044009e-03	ci right 9.341997e-03	k: 694	n:80000
KS ci ratio: 1.406603e-02	ci left: 4.891172e-01	ci right 4.960583e-01	k: 39407	n:80000
RFTN2   80000 perm   18 sec   (4475 perm/sec)   p_kst 4.925875e-01   p_cons 8.675000e-03   p_joint 3.138750e-02

Joint ci ratio: 7.464252e-02	ci left: 2.862237e-02	ci right 3.085252e-02	k: 2675	n:90000
Cons ci ratio: 1.397482e-01	ci left: 8.060695e-03	ci right 9.282401e-03	k: 779	n:90000
KS ci ratio: 1.327750e-02	ci left: 4.887174e-01	ci right 4.952608e-01	k: 44279	n:90000
RFTN2   90000 perm   20 sec   (4395 perm/sec)   p_kst 4.919889e-01   p_cons 8.655556e-03   p_joint 2.972222e-02

Joint ci ratio: 7.240022e-02	ci left: 2.744790e-02	ci right 2.951957e-02	k: 2847	n:100000
Cons ci ratio: 1.336439e-01	ci left: 7.959639e-03	ci right 9.109141e-03	k: 852	n:100000
KS ci ratio: 1.259790e-02	ci left: 4.888167e-01	ci right 4.950238e-01	k: 49192	n:100000
RFTN2   100000 perm   23 sec   (4321 perm/sec)   p_kst 4.919200e-01   p_cons 8.520000e-03   p_joint 2.847000e-02

Joint ci ratio: 7.109939e-02	ci left: 2.593397e-02	ci right 2.785472e-02	k: 2957	n:110000
Cons ci ratio: 1.275823e-01	ci left: 7.965934e-03	ci right 9.060216e-03	k: 935	n:110000
KS ci ratio: 1.200121e-02	ci left: 4.893958e-01	ci right 4.953137e-01	k: 54159	n:110000
RFTN2   110000 perm   26 sec   (4248 perm/sec)   p_kst 4.923545e-01   p_cons 8.500000e-03   p_joint 2.688182e-02

Joint ci ratio: 6.490535e-02	ci left: 2.854167e-02	ci right 3.046449e-02	k: 3539	n:120000
Cons ci ratio: 1.216765e-01	ci left: 8.052974e-03	ci right 9.104315e-03	k: 1028	n:120000
KS ci ratio: 1.156883e-02	ci left: 4.861179e-01	ci right 4.917827e-01	k: 58674	n:120000
RFTN2   120000 perm   29 sec   (4174 perm/sec)   p_kst 4.889500e-01   p_cons 8.566667e-03   p_joint 2.949167e-02

Joint ci ratio: 6.743995e-02	ci left: 2.447582e-02	ci right 2.619160e-02	k: 3292	n:130000
Cons ci ratio: 1.168369e-01	ci left: 8.082792e-03	ci right 9.093157e-03	k: 1115	n:130000
KS ci ratio: 1.111815e-02	ci left: 4.860868e-01	ci right 4.915291e-01	k: 63545	n:130000
RFTN2   130000 perm   32 sec   (4067 perm/sec)   p_kst 4.888077e-01   p_cons 8.576923e-03   p_joint 2.532308e-02

Joint ci ratio: 6.146129e-02	ci left: 2.736720e-02	ci right 2.910956e-02	k: 3952	n:140000
Cons ci ratio: 1.179431e-01	ci left: 7.366626e-03	ci right 8.296789e-03	k: 1095	n:140000
KS ci ratio: 1.071052e-02	ci left: 4.863353e-01	ci right 4.915794e-01	k: 68454	n:140000
RFTN2   140000 perm   35 sec   (4002 perm/sec)   p_kst 4.889571e-01   p_cons 7.821429e-03   p_joint 2.822857e-02

Joint ci ratio: 5.296829e-02	ci left: 3.429281e-02	ci right 3.616521e-02	k: 5283	n:150000
Cons ci ratio: 1.146987e-01	ci left: 7.283280e-03	ci right 8.175906e-03	k: 1158	n:150000
KS ci ratio: 1.035102e-02	ci left: 4.862472e-01	ci right 4.913132e-01	k: 73317	n:150000
RFTN2   150000 perm   38 sec   (3941 perm/sec)   p_kst 4.887800e-01   p_cons 7.720000e-03   p_joint 3.522000e-02

Joint ci ratio: 5.320075e-02	ci left: 3.194495e-02	ci right 3.369703e-02	k: 5250	n:160000
Cons ci ratio: 1.112047e-01	ci left: 7.277508e-03	ci right 8.140475e-03	k: 1232	n:160000
KS ci ratio: 1.001455e-02	ci left: 4.867165e-01	ci right 4.916214e-01	k: 78267	n:160000
RFTN2   160000 perm   41 sec   (3883 perm/sec)   p_kst 4.891687e-01   p_cons 7.700000e-03   p_joint 3.281250e-02

Joint ci ratio: 5.093742e-02	ci left: 3.280653e-02	ci right 3.452707e-02	k: 5722	n:170000
Cons ci ratio: 1.084306e-01	ci left: 7.215536e-03	ci right 8.048446e-03	k: 1296	n:170000
KS ci ratio: 9.719395e-03	ci left: 4.865916e-01	ci right 4.913499e-01	k: 83125	n:170000
RFTN2   170000 perm   44 sec   (3827 perm/sec)   p_kst 4.889706e-01   p_cons 7.623529e-03   p_joint 3.365882e-02

Joint ci ratio: 5.109283e-02	ci left: 3.085699e-02	ci right 3.248036e-02	k: 5699	n:180000
Cons ci ratio: 1.050406e-01	ci left: 7.274301e-03	ci right 8.086120e-03	k: 1381	n:180000
KS ci ratio: 9.439545e-03	ci left: 4.869770e-01	ci right 4.916011e-01	k: 88072	n:180000
RFTN2   180000 perm   48 sec   (3771 perm/sec)   p_kst 4.892889e-01   p_cons 7.672222e-03   p_joint 3.166111e-02

Joint ci ratio: 4.797011e-02	ci left: 3.313757e-02	ci right 3.477142e-02	k: 6450	n:190000
Cons ci ratio: 1.017404e-01	ci left: 7.358023e-03	ci right 8.151844e-03	k: 1472	n:190000
KS ci ratio: 9.186127e-03	ci left: 4.871288e-01	ci right 4.916295e-01	k: 92982	n:190000
RFTN2   190000 perm   51 sec   (3719 perm/sec)   p_kst 4.893789e-01   p_cons 7.747368e-03   p_joint 3.394737e-02

Joint ci ratio: 4.622099e-02	ci left: 3.391204e-02	ci right 3.552149e-02	k: 6942	n:200000
Cons ci ratio: 9.870109e-02	ci left: 7.438607e-03	ci right 8.215760e-03	k: 1564	n:200000
KS ci ratio: 8.949484e-03	ci left: 4.874118e-01	ci right 4.917985e-01	k: 97921	n:200000
RFTN2   200000 perm   55 sec   (3667 perm/sec)   p_kst 4.896050e-01   p_cons 7.820000e-03   p_joint 3.471000e-02

Outputting figure to mutsig2_images.part000000000146/RFTN2.4_1542_200000_0.48961_0.00782_0.03471.png
                gene_name: RFTN2
               theta_stop: 0.099 
                    nperm: 200000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.0078 
      ci_cons_bounds_left: 0.0074 
     ci_cons_bounds_right: 0.0082 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.034 
    ci_joint_bounds_right: 0.036 

Current progress: 36 percent done.
RFX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.574622e-02	ci left: 8.541665e-01	ci right 8.678225e-01	k: 8611	n:10000
Cons ci ratio: 2.074603e-02	ci left: 7.729656e-01	ci right 7.892703e-01	k: 7812	n:10000
KS ci ratio: 2.656849e-02	ci left: 6.759943e-01	ci right 6.942978e-01	k: 6852	n:10000
RFX4   10000 perm   2 sec   (5748 perm/sec)   p_kst 6.852000e-01   p_cons 7.812000e-01   p_joint 8.611000e-01

Outputting figure to mutsig2_images.part000000000146/RFX4.4_2485_10000_0.6852_0.7812_0.8611.png
                gene_name: RFX4
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 38 percent done.
RFX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.172396e-02	ci left: 5.945361e-01	ci right 6.138031e-01	k: 6042	n:10000
KS ci ratio: 5.864176e-03	ci left: 9.751447e-01	ci right 9.809722e-01	k: 9782	n:10000
RFX7   10000 perm   2 sec   (5073 perm/sec)   p_kst 9.782000e-01   p_cons 6.042000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RFX7.4_4419_10000_0.9782_0.6042_1.png
                gene_name: RFX7
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
RGAG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.705195e-02	ci left: 1.976171e-01	ci right 2.135548e-01	k: 2055	n:10000
Cons ci ratio: 9.615707e-02	ci left: 1.356056e-01	ci right 1.494034e-01	k: 1424	n:10000
KS ci ratio: 6.825929e-02	ci left: 2.394614e-01	ci right 2.564857e-01	k: 2479	n:10000
RGAG4   10000 perm   2 sec   (5876 perm/sec)   p_kst 2.479000e-01   p_cons 1.424000e-01   p_joint 2.055000e-01

Outputting figure to mutsig2_images.part000000000146/RGAG4.4_1714_10000_0.2479_0.1424_0.2055.png
                gene_name: RGAG4
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 42 percent done.
RGS20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.102633e-01	ci left: 1.059801e-01	ci right 1.184468e-01	k: 1121	n:10000
Cons ci ratio: 1.262686e-01	ci left: 8.232386e-02	ci right 9.351756e-02	k: 878	n:10000
KS ci ratio: 6.158970e-02	ci left: 2.793356e-01	ci right 2.971879e-01	k: 2882	n:10000
RGS20   10000 perm   2 sec   (6433 perm/sec)   p_kst 2.882000e-01   p_cons 8.780000e-02   p_joint 1.121000e-01

Joint ci ratio: 8.555098e-02	ci left: 9.092137e-02	ci right 9.909681e-02	k: 1899	n:20000
Cons ci ratio: 8.900991e-02	ci left: 8.445180e-02	ci right 9.236834e-02	k: 1767	n:20000
KS ci ratio: 4.403857e-02	ci left: 2.774592e-01	ci right 2.900037e-01	k: 5674	n:20000
RGS20   20000 perm   4 sec   (5711 perm/sec)   p_kst 2.837000e-01   p_cons 8.835000e-02   p_joint 9.495000e-02

Outputting figure to mutsig2_images.part000000000146/RGS20.4_1264_20000_0.2837_0.08835_0.09495.png
                gene_name: RGS20
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.099 

Current progress: 44 percent done.
RHBDD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.989677e-02	ci left: 6.226615e-01	ci right 6.416614e-01	k: 6322	n:10000
Cons ci ratio: 5.590609e-02	ci left: 3.202883e-01	ci right 3.388111e-01	k: 3295	n:10000
KS ci ratio: 3.023834e-02	ci left: 6.173352e-01	ci right 6.363908e-01	k: 6269	n:10000
RHBDD1   10000 perm   2 sec   (6135 perm/sec)   p_kst 6.269000e-01   p_cons 3.295000e-01   p_joint 6.322000e-01

Outputting figure to mutsig2_images.part000000000146/RHBDD1.4_972_10000_0.6269_0.3295_0.6322.png
                gene_name: RHBDD1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 45 percent done.
RHCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.543874e-02	ci left: 4.168789e-01	ci right 4.363639e-01	k: 4266	n:10000
Cons ci ratio: 2.996751e-02	ci left: 6.215560e-01	ci right 6.405676e-01	k: 6311	n:10000
KS ci ratio: 6.207343e-02	ci left: 2.761661e-01	ci right 2.939593e-01	k: 2850	n:10000
RHCE   10000 perm   2 sec   (6293 perm/sec)   p_kst 2.850000e-01   p_cons 6.311000e-01   p_joint 4.266000e-01

Outputting figure to mutsig2_images.part000000000146/RHCE.4_1294_10000_0.285_0.6311_0.4266.png
                gene_name: RHCE
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 47 percent done.
RHCG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.866427e-02	ci left: 2.372873e-01	ci right 2.542610e-01	k: 2457	n:10000
Cons ci ratio: 6.536699e-02	ci left: 2.557759e-01	ci right 2.731615e-01	k: 2644	n:10000
KS ci ratio: 7.830018e-02	ci left: 1.924939e-01	ci right 2.082810e-01	k: 2003	n:10000
RHCG   10000 perm   2 sec   (6088 perm/sec)   p_kst 2.003000e-01   p_cons 2.644000e-01   p_joint 2.457000e-01

Outputting figure to mutsig2_images.part000000000146/RHCG.4_1480_10000_0.2003_0.2644_0.2457.png
                gene_name: RHCG
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 49 percent done.
RHOBTB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.385065e-01	ci left: 2.315796e-02	ci right 2.952203e-02	k: 262	n:10000
Cons ci ratio: 1.278700e-01	ci left: 8.038196e-02	ci right 9.146065e-02	k: 858	n:10000
KS ci ratio: 2.801592e-01	ci left: 1.650803e-02	ci right 2.197711e-02	k: 191	n:10000
RHOBTB1   10000 perm   2 sec   (5388 perm/sec)   p_kst 1.910000e-02   p_cons 8.580000e-02   p_joint 2.620000e-02

Joint ci ratio: 1.708341e-01	ci left: 2.345530e-02	ci right 2.788407e-02	k: 512	n:20000
Cons ci ratio: 9.007588e-02	ci left: 8.259055e-02	ci right 9.043015e-02	k: 1729	n:20000
KS ci ratio: 1.997038e-01	ci left: 1.701043e-02	ci right 2.083125e-02	k: 377	n:20000
RHOBTB1   20000 perm   4 sec   (4828 perm/sec)   p_kst 1.885000e-02   p_cons 8.645000e-02   p_joint 2.560000e-02

Joint ci ratio: 1.364677e-01	ci left: 2.493733e-02	ci right 2.862175e-02	k: 802	n:30000
Cons ci ratio: 7.263172e-02	ci left: 8.527657e-02	ci right 9.173671e-02	k: 2654	n:30000
KS ci ratio: 1.591002e-01	ci left: 1.825353e-02	ci right 2.144042e-02	k: 594	n:30000
RHOBTB1   30000 perm   6 sec   (4734 perm/sec)   p_kst 1.980000e-02   p_cons 8.846667e-02   p_joint 2.673333e-02

Joint ci ratio: 1.089471e-01	ci left: 2.963952e-02	ci right 3.307896e-02	k: 1253	n:40000
Cons ci ratio: 6.256241e-02	ci left: 8.657200e-02	ci right 9.218778e-02	k: 3574	n:40000
KS ci ratio: 1.380816e-01	ci left: 1.838475e-02	ci right 2.113559e-02	k: 789	n:40000
RHOBTB1   40000 perm   9 sec   (4647 perm/sec)   p_kst 1.972500e-02   p_cons 8.935000e-02   p_joint 3.132500e-02

Joint ci ratio: 1.064597e-01	ci left: 2.499281e-02	ci right 2.782254e-02	k: 1319	n:50000
Cons ci ratio: 5.608694e-02	ci left: 8.649832e-02	ci right 9.150951e-02	k: 4449	n:50000
KS ci ratio: 1.246356e-01	ci left: 1.818962e-02	ci right 2.062663e-02	k: 969	n:50000
RHOBTB1   50000 perm   11 sec   (4574 perm/sec)   p_kst 1.938000e-02   p_cons 8.898000e-02   p_joint 2.638000e-02

Joint ci ratio: 8.527977e-02	ci left: 3.256413e-02	ci right 3.548117e-02	k: 2040	n:60000
Cons ci ratio: 4.961021e-02	ci left: 9.190700e-02	ci right 9.659900e-02	k: 5654	n:60000
KS ci ratio: 1.139762e-01	ci left: 1.823034e-02	ci right 2.044983e-02	k: 1159	n:60000
RHOBTB1   60000 perm   13 sec   (4498 perm/sec)   p_kst 1.931667e-02   p_cons 9.423333e-02   p_joint 3.400000e-02

Joint ci ratio: 1.045154e-01	ci left: 1.866942e-02	ci right 2.074209e-02	k: 1378	n:70000
Cons ci ratio: 4.602458e-02	ci left: 9.173476e-02	ci right 9.607040e-02	k: 6572	n:70000
KS ci ratio: 1.059750e-01	ci left: 1.815450e-02	ci right 2.019991e-02	k: 1341	n:70000
RHOBTB1   70000 perm   16 sec   (4425 perm/sec)   p_kst 1.915714e-02   p_cons 9.388571e-02   p_joint 1.968571e-02

Joint ci ratio: 9.931941e-02	ci left: 1.815054e-02	ci right 2.005956e-02	k: 1527	n:80000
Cons ci ratio: 4.317589e-02	ci left: 9.139208e-02	ci right 9.543746e-02	k: 7472	n:80000
KS ci ratio: 9.935256e-02	ci left: 1.813834e-02	ci right 2.004676e-02	k: 1526	n:80000
RHOBTB1   80000 perm   18 sec   (4358 perm/sec)   p_kst 1.907500e-02   p_cons 9.340000e-02   p_joint 1.908750e-02

Outputting figure to mutsig2_images.part000000000146/RHOBTB1.4_2127_80000_0.019075_0.0934_0.019088.png
                gene_name: RHOBTB1
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 51 percent done.
RFC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.418404e-02	ci left: 7.154271e-01	ci right 7.330421e-01	k: 7243	n:10000
KS ci ratio: 2.268002e-02	ci left: 7.405823e-01	ci right 7.576724e-01	k: 7492	n:10000
RFC4   10000 perm   2 sec   (6259 perm/sec)   p_kst 7.492000e-01   p_cons 7.243000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RFC4.3_1132_10000_0.7492_0.7243_1.png
                gene_name: RFC4
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
RFC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.664465e-02	ci left: 1.624881e-01	ci right 1.773047e-01	k: 1698	n:10000
Cons ci ratio: 1.360970e-01	ci left: 7.136438e-02	ci right 8.188384e-02	k: 765	n:10000
KS ci ratio: 1.118988e-01	ci left: 1.031515e-01	ci right 1.154771e-01	k: 1092	n:10000
RFC5   10000 perm   2 sec   (6576 perm/sec)   p_kst 1.092000e-01   p_cons 7.650000e-02   p_joint 1.698000e-01

Joint ci ratio: 8.765693e-02	ci left: 8.690165e-02	ci right 9.491774e-02	k: 1817	n:20000
Cons ci ratio: 9.688928e-02	ci left: 7.197315e-02	ci right 7.935078e-02	k: 1512	n:20000
KS ci ratio: 7.920726e-02	ci left: 1.047622e-01	ci right 1.134519e-01	k: 2181	n:20000
RFC5   20000 perm   3 sec   (5875 perm/sec)   p_kst 1.090500e-01   p_cons 7.560000e-02   p_joint 9.085000e-02

Outputting figure to mutsig2_images.part000000000146/RFC5.3_1073_20000_0.10905_0.0756_0.09085.png
                gene_name: RFC5
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.095 

Current progress: 55 percent done.
RFX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.603921e-02	ci left: 1.358995e-01	ci right 1.497093e-01	k: 1427	n:10000
Cons ci ratio: 2.499682e-01	ci left: 2.099569e-02	ci right 2.708592e-02	k: 239	n:10000
KS ci ratio: 3.742366e-02	ci left: 5.132551e-01	ci right 5.329314e-01	k: 5231	n:10000
RFX2   10000 perm   2 sec   (5747 perm/sec)   p_kst 5.231000e-01   p_cons 2.390000e-02   p_joint 1.427000e-01

Joint ci ratio: 7.943217e-02	ci left: 1.042218e-01	ci right 1.128924e-01	k: 2170	n:20000
Cons ci ratio: 1.786746e-01	ci left: 2.139724e-02	ci right 2.564284e-02	k: 469	n:20000
KS ci ratio: 2.651481e-02	ci left: 5.151995e-01	ci right 5.290941e-01	k: 10443	n:20000
RFX2   20000 perm   4 sec   (5155 perm/sec)   p_kst 5.221500e-01   p_cons 2.345000e-02   p_joint 1.085000e-01

Joint ci ratio: 3.438812e-02	ci left: 2.970063e-01	ci right 3.074320e-01	k: 9066	n:30000
Cons ci ratio: 1.445296e-01	ci left: 2.220120e-02	ci right 2.569183e-02	k: 717	n:30000
KS ci ratio: 2.178390e-02	ci left: 5.133946e-01	ci right 5.247351e-01	k: 15572	n:30000
RFX2   30000 perm   6 sec   (4920 perm/sec)   p_kst 5.190667e-01   p_cons 2.390000e-02   p_joint 3.022000e-01

Joint ci ratio: 3.479722e-02	ci left: 2.366412e-01	ci right 2.450465e-01	k: 9633	n:40000
Cons ci ratio: 1.244582e-01	ci left: 2.269194e-02	ci right 2.572767e-02	k: 967	n:40000
KS ci ratio: 1.891166e-02	ci left: 5.129396e-01	ci right 5.227578e-01	k: 20714	n:40000
RFX2   40000 perm   8 sec   (4769 perm/sec)   p_kst 5.178500e-01   p_cons 2.417500e-02   p_joint 2.408250e-01

Joint ci ratio: 3.105313e-02	ci left: 2.379128e-01	ci right 2.454372e-01	k: 12083	n:50000
Cons ci ratio: 1.117457e-01	ci left: 2.267618e-02	ci right 2.537947e-02	k: 1200	n:50000
KS ci ratio: 1.696848e-02	ci left: 5.118889e-01	ci right 5.206692e-01	k: 25814	n:50000
RFX2   50000 perm   11 sec   (4651 perm/sec)   p_kst 5.162800e-01   p_cons 2.400000e-02   p_joint 2.416600e-01

Joint ci ratio: 3.461910e-02	ci left: 1.730099e-01	ci right 1.791215e-01	k: 10563	n:60000
Cons ci ratio: 1.012989e-01	ci left: 2.311516e-02	ci right 2.559781e-02	k: 1460	n:60000
KS ci ratio: 1.548432e-02	ci left: 5.124590e-01	ci right 5.204727e-01	k: 30988	n:60000
RFX2   60000 perm   13 sec   (4549 perm/sec)   p_kst 5.164667e-01   p_cons 2.433333e-02   p_joint 1.760500e-01

Joint ci ratio: 2.693330e-02	ci left: 2.291756e-01	ci right 2.354466e-01	k: 16261	n:70000
Cons ci ratio: 9.360186e-02	ci left: 2.329756e-02	ci right 2.559923e-02	k: 1710	n:70000
KS ci ratio: 1.436433e-02	ci left: 5.117615e-01	ci right 5.191801e-01	k: 36083	n:70000
RFX2   70000 perm   16 sec   (4459 perm/sec)   p_kst 5.154714e-01   p_cons 2.442857e-02   p_joint 2.323000e-01

Outputting figure to mutsig2_images.part000000000146/RFX2.3_2240_70000_0.51547_0.024429_0.2323.png
                gene_name: RFX2
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 56 percent done.
RGL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.324248e-02	ci left: 1.738909e-01	ci right 1.890951e-01	k: 1814	n:10000
Cons ci ratio: 1.676522e-02	ci left: 8.381638e-01	ci right 8.524344e-01	k: 8454	n:10000
KS ci ratio: 1.765078e-01	ci left: 4.283864e-02	ci right 5.122777e-02	k: 469	n:10000
RGL4   10000 perm   2 sec   (6181 perm/sec)   p_kst 4.690000e-02   p_cons 8.454000e-01   p_joint 1.814000e-01

Joint ci ratio: 6.978939e-02	ci left: 1.314745e-01	ci right 1.410316e-01	k: 2724	n:20000
Cons ci ratio: 1.178605e-02	ci left: 8.418342e-01	ci right 8.518647e-01	k: 16938	n:20000
KS ci ratio: 1.258701e-01	ci left: 4.333189e-02	ci right 4.920094e-02	k: 924	n:20000
RGL4   20000 perm   4 sec   (5498 perm/sec)   p_kst 4.620000e-02   p_cons 8.469000e-01   p_joint 1.362000e-01

Joint ci ratio: 6.322920e-02	ci left: 1.099643e-01	ci right 1.171774e-01	k: 3406	n:30000
Cons ci ratio: 9.693472e-03	ci left: 8.408547e-01	ci right 8.490784e-01	k: 25350	n:30000
KS ci ratio: 1.001703e-01	ci left: 4.612881e-02	ci right 5.102575e-02	k: 1456	n:30000
RGL4   30000 perm   6 sec   (5241 perm/sec)   p_kst 4.853333e-02   p_cons 8.450000e-01   p_joint 1.135333e-01

Joint ci ratio: 4.578055e-02	ci left: 1.513422e-01	ci right 1.584580e-01	k: 6195	n:40000
Cons ci ratio: 8.379488e-03	ci left: 8.418953e-01	ci right 8.490045e-01	k: 33819	n:40000
KS ci ratio: 8.830621e-02	ci left: 4.487300e-02	ci right 4.904308e-02	k: 1877	n:40000
RGL4   40000 perm   8 sec   (5057 perm/sec)   p_kst 4.692500e-02   p_cons 8.454750e-01   p_joint 1.548750e-01

Outputting figure to mutsig2_images.part000000000146/RGL4.3_1466_40000_0.046925_0.84547_0.15488.png
                gene_name: RGL4
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 58 percent done.
RGMB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.114064e-02	ci left: 3.605262e-01	ci right 3.795496e-01	k: 3700	n:10000
Cons ci ratio: 1.552846e-02	ci left: 8.575336e-01	ci right 8.710534e-01	k: 8644	n:10000
KS ci ratio: 7.512432e-02	ci left: 2.058972e-01	ci right 2.220697e-01	k: 2139	n:10000
RGMB   10000 perm   2 sec   (6067 perm/sec)   p_kst 2.139000e-01   p_cons 8.644000e-01   p_joint 3.700000e-01

Outputting figure to mutsig2_images.part000000000146/RGMB.3_1453_10000_0.2139_0.8644_0.37.png
                gene_name: RGMB
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 60 percent done.
RGR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.647465e-02	ci left: 5.260662e-01	ci right 5.457129e-01	k: 5359	n:10000
Cons ci ratio: 1.176235e-03	ci left: 9.984243e-01	ci right 9.996546e-01	k: 9992	n:10000
KS ci ratio: 6.345683e-02	ci left: 2.673539e-01	ci right 2.849767e-01	k: 2761	n:10000
RGR   10000 perm   1 sec   (6791 perm/sec)   p_kst 2.761000e-01   p_cons 9.992000e-01   p_joint 5.359000e-01

Outputting figure to mutsig2_images.part000000000146/RGR.3_916_10000_0.2761_0.9992_0.5359.png
                gene_name: RGR
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 62 percent done.
RGS13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.985136e-02	ci left: 2.310633e-01	ci right 2.478887e-01	k: 2394	n:10000
Cons ci ratio: 1.389664e-01	ci left: 6.855690e-02	ci right 7.889307e-02	k: 736	n:10000
KS ci ratio: 9.731480e-02	ci left: 1.327651e-01	ci right 1.464456e-01	k: 1395	n:10000
RGS13   10000 perm   1 sec   (6735 perm/sec)   p_kst 1.395000e-01   p_cons 7.360000e-02   p_joint 2.394000e-01

Joint ci ratio: 1.055611e-01	ci left: 6.108537e-02	ci right 6.794190e-02	k: 1289	n:20000
Cons ci ratio: 9.932497e-02	ci left: 6.865040e-02	ci right 7.587455e-02	k: 1444	n:20000
KS ci ratio: 6.879880e-02	ci left: 1.348245e-01	ci right 1.444805e-01	k: 2792	n:20000
RGS13   20000 perm   3 sec   (5946 perm/sec)   p_kst 1.396000e-01   p_cons 7.220000e-02   p_joint 6.445000e-02

Joint ci ratio: 8.546140e-02	ci left: 6.272590e-02	ci right 6.835860e-02	k: 1965	n:30000
Cons ci ratio: 7.810036e-02	ci left: 7.443321e-02	ci right 8.051558e-02	k: 2323	n:30000
KS ci ratio: 5.644471e-02	ci left: 1.345768e-01	ci right 1.424267e-01	k: 4154	n:30000
RGS13   30000 perm   5 sec   (5653 perm/sec)   p_kst 1.384667e-01   p_cons 7.743333e-02   p_joint 6.550000e-02

Outputting figure to mutsig2_images.part000000000146/RGS13.3_496_30000_0.13847_0.077433_0.0655.png
                gene_name: RGS13
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.068 

Current progress: 64 percent done.
RGS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.083417e-02	ci left: 9.238935e-01	ci right 9.340549e-01	k: 9291	n:10000
KS ci ratio: 2.404485e-02	ci left: 7.177492e-01	ci right 7.353186e-01	k: 7266	n:10000
RGS2   10000 perm   2 sec   (6651 perm/sec)   p_kst 7.266000e-01   p_cons 9.291000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RGS2.3_656_10000_0.7266_0.9291_1.png
                gene_name: RGS2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
RGS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.480849e-02	ci left: 7.050317e-01	ci right 7.228435e-01	k: 7140	n:10000
Cons ci ratio: 4.789100e-02	ci left: 3.914738e-01	ci right 4.107839e-01	k: 4011	n:10000
KS ci ratio: 2.341025e-02	ci left: 7.283538e-01	ci right 7.457079e-01	k: 7371	n:10000
RGS4   10000 perm   2 sec   (6094 perm/sec)   p_kst 7.371000e-01   p_cons 4.011000e-01   p_joint 7.140000e-01

Outputting figure to mutsig2_images.part000000000146/RGS4.3_933_10000_0.7371_0.4011_0.714.png
                gene_name: RGS4
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 67 percent done.
RGS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.582604e-02	ci left: 6.881889e-01	ci right 7.062961e-01	k: 6973	n:10000
Cons ci ratio: 4.867731e-02	ci left: 3.837082e-01	ci right 4.029540e-01	k: 3933	n:10000
KS ci ratio: 2.627951e-02	ci left: 6.807302e-01	ci right 6.989591e-01	k: 6899	n:10000
RGS6   10000 perm   2 sec   (5744 perm/sec)   p_kst 6.899000e-01   p_cons 3.933000e-01   p_joint 6.973000e-01

Outputting figure to mutsig2_images.part000000000146/RGS6.3_1483_10000_0.6899_0.3933_0.6973.png
                gene_name: RGS6
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 69 percent done.
RHBG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.736681e-02	ci left: 3.967519e-01	ci right 4.161027e-01	k: 4064	n:10000
Cons ci ratio: 9.830757e-03	ci left: 9.360983e-01	ci right 9.454429e-01	k: 9409	n:10000
KS ci ratio: 8.271402e-02	ci left: 1.757597e-01	ci right 1.910252e-01	k: 1833	n:10000
RHBG   10000 perm   2 sec   (5946 perm/sec)   p_kst 1.833000e-01   p_cons 9.409000e-01   p_joint 4.064000e-01

Outputting figure to mutsig2_images.part000000000146/RHBG.3_1418_10000_0.1833_0.9409_0.4064.png
                gene_name: RHBG
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 71 percent done.
RHD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.331236e-02	ci left: 4.404146e-01	ci right 4.600144e-01	k: 4502	n:10000
Cons ci ratio: 5.756597e-02	ci left: 3.075869e-01	ci right 3.259199e-01	k: 3167	n:10000
KS ci ratio: 5.030657e-02	ci left: 3.681846e-01	ci right 3.872867e-01	k: 3777	n:10000
RHD   10000 perm   2 sec   (6002 perm/sec)   p_kst 3.777000e-01   p_cons 3.167000e-01   p_joint 4.502000e-01

Outputting figure to mutsig2_images.part000000000146/RHD.3_1294_10000_0.3777_0.3167_0.4502.png
                gene_name: RHD
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 73 percent done.
RHO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.419628e-02	ci left: 8.776639e-01	ci right 8.903114e-01	k: 8841	n:10000
KS ci ratio: 3.738618e-02	ci left: 5.137554e-01	ci right 5.334308e-01	k: 5236	n:10000
RHO   10000 perm   1 sec   (6849 perm/sec)   p_kst 5.236000e-01   p_cons 8.841000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RHO.3_1067_10000_0.5236_0.8841_1.png
                gene_name: RHO
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
REXO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.866090e-02	ci left: 2.995534e-01	ci right 3.177582e-01	k: 3086	n:10000
Cons ci ratio: 1.014049e-01	ci left: 1.233692e-01	ci right 1.366472e-01	k: 1299	n:10000
KS ci ratio: 1.466274e-01	ci left: 6.179002e-02	ci right 7.166421e-02	k: 666	n:10000
REXO4   10000 perm   2 sec   (6563 perm/sec)   p_kst 6.660000e-02   p_cons 1.299000e-01   p_joint 3.086000e-01

Joint ci ratio: 7.391069e-02	ci left: 1.187242e-01	ci right 1.278856e-01	k: 2465	n:20000
Cons ci ratio: 7.168948e-02	ci left: 1.253682e-01	ci right 1.347397e-01	k: 2600	n:20000
KS ci ratio: 1.026566e-01	ci left: 6.445142e-02	ci right 7.147482e-02	k: 1358	n:20000
REXO4   20000 perm   3 sec   (5768 perm/sec)   p_kst 6.790000e-02   p_cons 1.300000e-01   p_joint 1.232500e-01

Joint ci ratio: 5.711666e-02	ci left: 1.318105e-01	ci right 1.395936e-01	k: 4070	n:30000
Cons ci ratio: 5.831569e-02	ci left: 1.270696e-01	ci right 1.347354e-01	k: 3926	n:30000
KS ci ratio: 8.470316e-02	ci left: 6.380404e-02	ci right 6.948023e-02	k: 1998	n:30000
REXO4   30000 perm   5 sec   (5511 perm/sec)   p_kst 6.660000e-02   p_cons 1.308667e-01   p_joint 1.356667e-01

Outputting figure to mutsig2_images.part000000000146/REXO4.2_1301_30000_0.0666_0.13087_0.13567.png
                gene_name: REXO4
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 76 percent done.
RFPL4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.500759e-02	ci left: 3.274362e-01	ci right 3.460590e-01	k: 3367	n:10000
Cons ci ratio: 1.074258e-01	ci left: 1.111530e-01	ci right 1.238707e-01	k: 1174	n:10000
KS ci ratio: 8.114669e-02	ci left: 1.814664e-01	ci right 1.969151e-01	k: 1891	n:10000
RFPL4B   10000 perm   2 sec   (6252 perm/sec)   p_kst 1.891000e-01   p_cons 1.174000e-01   p_joint 3.367000e-01

Joint ci ratio: 9.082502e-02	ci left: 8.131738e-02	ci right 8.910371e-02	k: 1703	n:20000
Cons ci ratio: 7.844266e-02	ci left: 1.066291e-01	ci right 1.153844e-01	k: 2219	n:20000
KS ci ratio: 5.709189e-02	ci left: 1.852757e-01	ci right 1.962144e-01	k: 3814	n:20000
RFPL4B   20000 perm   3 sec   (5913 perm/sec)   p_kst 1.907000e-01   p_cons 1.109500e-01   p_joint 8.515000e-02

Outputting figure to mutsig2_images.part000000000146/RFPL4B.2_796_20000_0.1907_0.11095_0.08515.png
                gene_name: RFPL4B
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.089 

Current progress: 78 percent done.
RFWD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.664796e-02	ci left: 3.145320e-01	ci right 3.329708e-01	k: 3237	n:10000
Cons ci ratio: 7.776672e-02	ci left: 1.946611e-01	ci right 2.105125e-01	k: 2025	n:10000
KS ci ratio: 2.672870e-02	ci left: 6.733749e-01	ci right 6.917187e-01	k: 6826	n:10000
RFWD3   10000 perm   2 sec   (6075 perm/sec)   p_kst 6.826000e-01   p_cons 2.025000e-01   p_joint 3.237000e-01

Outputting figure to mutsig2_images.part000000000146/RFWD3.2_2373_10000_0.6826_0.2025_0.3237.png
                gene_name: RFWD3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 80 percent done.
RG9MTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.420220e-02	ci left: 7.151243e-01	ci right 7.327451e-01	k: 7240	n:10000
KS ci ratio: 2.908557e-02	ci left: 6.354296e-01	ci right 6.542860e-01	k: 6449	n:10000
RG9MTD1   10000 perm   1 sec   (6933 perm/sec)   p_kst 6.449000e-01   p_cons 7.240000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RG9MTD1.2_1216_10000_0.6449_0.724_1.png
                gene_name: RG9MTD1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
RGP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.483237e-03	ci left: 9.780229e-01	ci right 9.834920e-01	k: 9809	n:10000
Cons ci ratio: 3.710988e-02	ci left: 5.174580e-01	ci right 5.371261e-01	k: 5273	n:10000
KS ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
RGP1   10000 perm   2 sec   (6638 perm/sec)   p_kst 3.885000e-01   p_cons 5.273000e-01   p_joint 9.809000e-01

Outputting figure to mutsig2_images.part000000000146/RGP1.2_1336_10000_0.3885_0.5273_0.9809.png
                gene_name: RGP1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 84 percent done.
RGS14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
Cons ci ratio: 4.867731e-02	ci left: 3.837082e-01	ci right 4.029540e-01	k: 3933	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
RGS14   10000 perm   2 sec   (6110 perm/sec)   p_kst 2.000000e-04   p_cons 3.933000e-01   p_joint 2.100000e-03

Joint ci ratio: 1.385617e+00	ci left: 1.407294e-04	ci right 7.210000e-04	k: 7	n:20000
Cons ci ratio: 3.469904e-02	ci left: 3.827333e-01	ci right 3.962988e-01	k: 7790	n:20000
KS ci ratio: 1.959755e+00	ci left: 3.093467e-05	ci right 4.383005e-04	k: 3	n:20000
RGS14   20000 perm   4 sec   (5292 perm/sec)   p_kst 1.500000e-04   p_cons 3.895000e-01   p_joint 3.500000e-04

Joint ci ratio: 1.047402e+00	ci left: 2.307513e-04	ci right 7.408992e-04	k: 13	n:30000
Cons ci ratio: 2.824936e-02	ci left: 3.853725e-01	ci right 3.964486e-01	k: 11727	n:30000
KS ci ratio: 1.752902e+00	ci left: 3.633000e-05	ci right 3.413508e-04	k: 4	n:30000
RGS14   30000 perm   6 sec   (5069 perm/sec)   p_kst 1.333333e-04   p_cons 3.909000e-01   p_joint 4.333333e-04

Joint ci ratio: 7.999166e-01	ci left: 3.645345e-04	ci right 8.626582e-04	k: 23	n:40000
Cons ci ratio: 2.451651e-02	ci left: 3.851160e-01	ci right 3.947000e-01	k: 15596	n:40000
KS ci ratio: 1.306503e+00	ci left: 8.634963e-05	ci right 3.940415e-04	k: 8	n:40000
RGS14   40000 perm   8 sec   (4954 perm/sec)   p_kst 2.000000e-04   p_cons 3.899000e-01   p_joint 5.750000e-04

Joint ci ratio: 7.405955e-01	ci left: 3.558926e-04	ci right 7.855751e-04	k: 27	n:50000
Cons ci ratio: 2.189070e-02	ci left: 3.864398e-01	ci right 3.950129e-01	k: 19536	n:50000
KS ci ratio: 1.306536e+00	ci left: 6.907909e-05	ci right 3.152393e-04	k: 8	n:50000
RGS14   50000 perm   10 sec   (4863 perm/sec)   p_kst 1.600000e-04   p_cons 3.907200e-01   p_joint 5.400000e-04

Joint ci ratio: 6.821911e-01	ci left: 3.648273e-04	ci right 7.528249e-04	k: 32	n:60000
Cons ci ratio: 1.993547e-02	ci left: 3.879576e-01	ci right 3.957862e-01	k: 23512	n:60000
KS ci ratio: 1.239499e+00	ci left: 6.859177e-05	ci right 2.847275e-04	k: 9	n:60000
RGS14   60000 perm   13 sec   (4769 perm/sec)   p_kst 1.500000e-04   p_cons 3.918667e-01   p_joint 5.333333e-04

Joint ci ratio: 6.531607e-01	ci left: 3.482923e-04	ci right 6.953110e-04	k: 35	n:70000
Cons ci ratio: 1.838100e-02	ci left: 3.902064e-01	ci right 3.974596e-01	k: 27568	n:70000
KS ci ratio: 1.131501e+00	ci left: 7.844767e-05	ci right 2.811545e-04	k: 11	n:70000
RGS14   70000 perm   15 sec   (4684 perm/sec)   p_kst 1.571429e-04   p_cons 3.938286e-01   p_joint 5.000000e-04

Joint ci ratio: 6.357530e-01	ci left: 3.256629e-04	ci right 6.374395e-04	k: 37	n:80000
Cons ci ratio: 1.717065e-02	ci left: 3.910859e-01	ci right 3.978717e-01	k: 31558	n:80000
KS ci ratio: 1.131515e+00	ci left: 6.864144e-05	ci right 2.460121e-04	k: 11	n:80000
RGS14   80000 perm   17 sec   (4602 perm/sec)   p_kst 1.375000e-04   p_cons 3.944750e-01   p_joint 4.625000e-04

Joint ci ratio: 7.039276e-01	ci left: 2.249095e-04	ci right 4.758201e-04	k: 30	n:90000
Cons ci ratio: 1.620367e-02	ci left: 3.908388e-01	ci right 3.972347e-01	k: 35463	n:90000
KS ci ratio: 1.087128e+00	ci left: 6.889712e-05	ci right 2.328949e-04	k: 12	n:90000
RGS14   90000 perm   20 sec   (4522 perm/sec)   p_kst 1.333333e-04   p_cons 3.940333e-01   p_joint 3.333333e-04

Joint ci ratio: 6.822684e-01	ci left: 2.188897e-04	ci right 4.517148e-04	k: 32	n:100000
Cons ci ratio: 1.538453e-02	ci left: 3.906201e-01	ci right 3.966861e-01	k: 39365	n:100000
KS ci ratio: 1.012059e+00	ci left: 7.654135e-05	ci right 2.348851e-04	k: 14	n:100000
RGS14   100000 perm   22 sec   (4445 perm/sec)   p_kst 1.400000e-04   p_cons 3.936500e-01   p_joint 3.200000e-04

Joint ci ratio: 6.532234e-01	ci left: 2.216350e-04	ci right 4.424864e-04	k: 35	n:110000
Cons ci ratio: 1.468495e-02	ci left: 3.902300e-01	ci right 3.960120e-01	k: 43243	n:110000
KS ci ratio: 9.506619e-01	ci left: 8.314205e-05	ci right 2.361984e-04	k: 16	n:110000
RGS14   110000 perm   25 sec   (4373 perm/sec)   p_kst 1.454545e-04   p_cons 3.931182e-01   p_joint 3.181818e-04

Joint ci ratio: 6.358046e-01	ci left: 2.171041e-04	ci right 4.249721e-04	k: 37	n:120000
Cons ci ratio: 1.403801e-02	ci left: 3.910923e-01	ci right 3.966295e-01	k: 47263	n:120000
KS ci ratio: 9.506683e-01	ci left: 7.621338e-05	ci right 2.165160e-04	k: 16	n:120000
RGS14   120000 perm   28 sec   (4299 perm/sec)   p_kst 1.333333e-04   p_cons 3.938583e-01   p_joint 3.083333e-04

Joint ci ratio: 6.121022e-01	ci left: 2.198287e-04	ci right 4.189663e-04	k: 40	n:130000
Cons ci ratio: 1.348265e-02	ci left: 3.913654e-01	ci right 3.966855e-01	k: 51223	n:130000
KS ci ratio: 8.992405e-01	ci left: 8.206308e-05	ci right 2.188201e-04	k: 18	n:130000
RGS14   130000 perm   31 sec   (4233 perm/sec)   p_kst 1.384615e-04   p_cons 3.940231e-01   p_joint 3.076923e-04

Joint ci ratio: 5.778754e-01	ci left: 2.344616e-04	ci right 4.300733e-04	k: 45	n:140000
Cons ci ratio: 1.297906e-02	ci left: 3.919456e-01	ci right 3.970730e-01	k: 55231	n:140000
KS ci ratio: 8.356782e-01	ci left: 9.285469e-05	ci right 2.292818e-04	k: 21	n:140000
RGS14   140000 perm   34 sec   (4166 perm/sec)   p_kst 1.500000e-04   p_cons 3.945071e-01   p_joint 3.214286e-04

Joint ci ratio: 5.542775e-01	ci left: 2.416793e-04	ci right 4.318479e-04	k: 49	n:150000
Cons ci ratio: 1.253321e-02	ci left: 3.922518e-01	ci right 3.972056e-01	k: 59209	n:150000
KS ci ratio: 8.001000e-01	ci left: 9.720258e-05	ci right 2.300665e-04	k: 23	n:150000
RGS14   150000 perm   37 sec   (4106 perm/sec)   p_kst 1.533333e-04   p_cons 3.947267e-01   p_joint 3.266667e-04

Joint ci ratio: 5.488206e-01	ci left: 2.319521e-04	ci right 4.119718e-04	k: 50	n:160000
Cons ci ratio: 1.213909e-02	ci left: 3.921789e-01	ci right 3.969749e-01	k: 63132	n:160000
KS ci ratio: 8.001041e-01	ci left: 9.112728e-05	ci right 2.156878e-04	k: 23	n:160000
RGS14   160000 perm   40 sec   (4049 perm/sec)   p_kst 1.437500e-04   p_cons 3.945750e-01   p_joint 3.125000e-04

Joint ci ratio: 5.284856e-01	ci left: 2.386350e-04	ci right 4.144404e-04	k: 54	n:170000
Cons ci ratio: 1.177387e-02	ci left: 3.923636e-01	ci right 3.970164e-01	k: 67097	n:170000
KS ci ratio: 8.001078e-01	ci left: 8.576674e-05	ci right 2.030007e-04	k: 23	n:170000
RGS14   170000 perm   43 sec   (3992 perm/sec)   p_kst 1.352941e-04   p_cons 3.946882e-01   p_joint 3.176471e-04

Joint ci ratio: 5.018181e-01	ci left: 2.543778e-04	ci right 4.290455e-04	k: 60	n:180000
Cons ci ratio: 1.144559e-02	ci left: 3.922855e-01	ci right 3.968068e-01	k: 71018	n:180000
KS ci ratio: 7.687176e-01	ci left: 8.988352e-05	ci right 2.050206e-04	k: 25	n:180000
RGS14   180000 perm   46 sec   (3935 perm/sec)   p_kst 1.388889e-04   p_cons 3.945444e-01   p_joint 3.333333e-04

Joint ci ratio: 4.824336e-01	ci left: 2.640392e-04	ci right 4.360208e-04	k: 65	n:190000
Cons ci ratio: 1.113989e-02	ci left: 3.923645e-01	ci right 3.967651e-01	k: 74967	n:190000
KS ci ratio: 7.039935e-01	ci left: 1.065334e-04	ci right 2.253969e-04	k: 30	n:190000
RGS14   190000 perm   49 sec   (3882 perm/sec)   p_kst 1.578947e-04   p_cons 3.945632e-01   p_joint 3.421053e-04

Joint ci ratio: 4.788228e-01	ci left: 2.552309e-04	ci right 4.198221e-04	k: 66	n:200000
Cons ci ratio: 1.085540e-02	ci left: 3.925269e-01	ci right 3.968161e-01	k: 78934	n:200000
KS ci ratio: 7.039965e-01	ci left: 1.012066e-04	ci right 2.141275e-04	k: 30	n:200000
RGS14   200000 perm   52 sec   (3826 perm/sec)   p_kst 1.500000e-04   p_cons 3.946700e-01   p_joint 3.300000e-04

Joint ci ratio: 4.684504e-01	ci left: 2.556569e-04	ci right 4.158100e-04	k: 69	n:210000
Cons ci ratio: 1.059038e-02	ci left: 3.927322e-01	ci right 3.969183e-01	k: 82913	n:210000
KS ci ratio: 6.722184e-01	ci left: 1.081723e-04	ci right 2.206800e-04	k: 33	n:210000
RGS14   210000 perm   56 sec   (3775 perm/sec)   p_kst 1.571429e-04   p_cons 3.948238e-01   p_joint 3.285714e-04

Joint ci ratio: 4.587241e-01	ci left: 2.560793e-04	ci right 4.121283e-04	k: 72	n:220000
Cons ci ratio: 1.034968e-02	ci left: 3.926521e-01	ci right 3.967416e-01	k: 86833	n:220000
KS ci ratio: 6.625467e-01	ci left: 1.070295e-04	ci right 2.159552e-04	k: 34	n:220000
RGS14   220000 perm   59 sec   (3724 perm/sec)   p_kst 1.545455e-04   p_cons 3.946955e-01   p_joint 3.272727e-04

Joint ci ratio: 3.703142e-01	ci left: 3.970306e-04	ci right 5.811567e-04	k: 111	n:230000
Cons ci ratio: 1.011234e-02	ci left: 3.931620e-01	ci right 3.971623e-01	k: 90887	n:230000
KS ci ratio: 6.443908e-01	ci left: 1.096282e-04	ci right 2.166855e-04	k: 36	n:230000
RGS14   230000 perm   63 sec   (3674 perm/sec)   p_kst 1.565217e-04   p_cons 3.951609e-01   p_joint 4.826087e-04

Joint ci ratio: 3.623150e-01	ci left: 3.994036e-04	ci right 5.796844e-04	k: 116	n:240000
Cons ci ratio: 9.896974e-03	ci left: 3.933223e-01	ci right 3.972385e-01	k: 94867	n:240000
KS ci ratio: 6.443930e-01	ci left: 1.050603e-04	ci right 2.076572e-04	k: 36	n:240000
RGS14   240000 perm   66 sec   (3625 perm/sec)   p_kst 1.500000e-04   p_cons 3.952792e-01   p_joint 4.833333e-04

Joint ci ratio: 3.562767e-01	ci left: 3.979832e-04	ci right 5.739354e-04	k: 120	n:250000
Cons ci ratio: 9.694243e-03	ci left: 3.934986e-01	ci right 3.973358e-01	k: 98854	n:250000
KS ci ratio: 6.443951e-01	ci left: 1.008578e-04	ci right 1.993512e-04	k: 36	n:250000
RGS14   250000 perm   70 sec   (3575 perm/sec)   p_kst 1.440000e-04   p_cons 3.954160e-01   p_joint 4.800000e-04

Joint ci ratio: 3.533702e-01	ci left: 3.896825e-04	ci right 5.602367e-04	k: 122	n:260000
Cons ci ratio: 9.500957e-03	ci left: 3.937889e-01	ci right 3.975519e-01	k: 102874	n:260000
KS ci ratio: 6.358603e-01	ci left: 1.001997e-04	ci right 1.961471e-04	k: 37	n:260000
RGS14   260000 perm   74 sec   (3526 perm/sec)   p_kst 1.423077e-04   p_cons 3.956692e-01   p_joint 4.692308e-04

Joint ci ratio: 3.505336e-01	ci left: 3.820021e-04	ci right 5.475474e-04	k: 124	n:270000
Cons ci ratio: 9.329619e-03	ci left: 3.935032e-01	ci right 3.971953e-01	k: 106744	n:270000
KS ci ratio: 6.276559e-01	ci left: 9.959839e-05	ci right 1.931726e-04	k: 38	n:270000
RGS14   270000 perm   78 sec   (3478 perm/sec)   p_kst 1.407407e-04   p_cons 3.953481e-01   p_joint 4.592593e-04

Joint ci ratio: 3.372979e-01	ci left: 4.009907e-04	ci right 5.667771e-04	k: 134	n:280000
Cons ci ratio: 9.157776e-03	ci left: 3.937310e-01	ci right 3.973568e-01	k: 110752	n:280000
KS ci ratio: 5.977474e-01	ci left: 1.081089e-04	ci right 2.027511e-04	k: 42	n:280000
RGS14   280000 perm   82 sec   (3432 perm/sec)   p_kst 1.500000e-04   p_cons 3.955429e-01   p_joint 4.785714e-04

Joint ci ratio: 3.336126e-01	ci left: 3.966369e-04	ci right 5.584463e-04	k: 137	n:290000
Cons ci ratio: 9.004761e-03	ci left: 3.934303e-01	ci right 3.969925e-01	k: 114611	n:290000
KS ci ratio: 5.843128e-01	ci left: 1.102451e-04	ci right 2.036773e-04	k: 44	n:290000
RGS14   290000 perm   86 sec   (3386 perm/sec)   p_kst 1.517241e-04   p_cons 3.952103e-01   p_joint 4.724138e-04

Joint ci ratio: 3.959145e-01	ci left: 2.622091e-04	ci right 3.944252e-04	k: 97	n:300000
Cons ci ratio: 8.852060e-03	ci left: 3.935332e-01	ci right 3.970355e-01	k: 118585	n:300000
KS ci ratio: 5.843143e-01	ci left: 1.065702e-04	ci right 1.968882e-04	k: 44	n:300000
RGS14   300000 perm   90 sec   (3340 perm/sec)   p_kst 1.466667e-04   p_cons 3.952833e-01   p_joint 3.233333e-04

Joint ci ratio: 3.189269e-01	ci left: 4.095506e-04	ci right 5.677735e-04	k: 150	n:310000
Cons ci ratio: 8.710986e-03	ci left: 3.934042e-01	ci right 3.968493e-01	k: 122489	n:310000
KS ci ratio: 5.657585e-01	ci left: 1.114015e-04	ci right 2.016080e-04	k: 47	n:310000
RGS14   310000 perm   94 sec   (3298 perm/sec)   p_kst 1.516129e-04   p_cons 3.951258e-01   p_joint 4.838710e-04

Joint ci ratio: 3.189293e-01	ci left: 3.967517e-04	ci right 5.500313e-04	k: 150	n:320000
Cons ci ratio: 8.571908e-03	ci left: 3.935367e-01	ci right 3.969277e-01	k: 126474	n:320000
KS ci ratio: 5.657599e-01	ci left: 1.079202e-04	ci right 1.953079e-04	k: 47	n:320000
RGS14   320000 perm   99 sec   (3246 perm/sec)   p_kst 1.468750e-04   p_cons 3.952312e-01   p_joint 4.687500e-04

Joint ci ratio: 3.137765e-01	ci left: 3.986777e-04	ci right 5.497141e-04	k: 155	n:330000
Cons ci ratio: 8.440568e-03	ci left: 3.935889e-01	ci right 3.969281e-01	k: 130435	n:330000
KS ci ratio: 5.599576e-01	ci left: 1.072486e-04	ci right 1.928471e-04	k: 48	n:330000
RGS14   330000 perm   103 sec   (3209 perm/sec)   p_kst 1.454545e-04   p_cons 3.952576e-01   p_joint 4.696970e-04

Joint ci ratio: 3.754072e-01	ci left: 2.605791e-04	ci right 3.834953e-04	k: 108	n:340000
Cons ci ratio: 8.316979e-03	ci left: 3.935297e-01	ci right 3.968192e-01	k: 134359	n:340000
KS ci ratio: 5.599588e-01	ci left: 1.040942e-04	ci right 1.871752e-04	k: 48	n:340000
RGS14   340000 perm   107 sec   (3174 perm/sec)   p_kst 1.411765e-04   p_cons 3.951735e-01   p_joint 3.176471e-04

Joint ci ratio: 3.703454e-01	ci left: 2.609022e-04	ci right 3.819094e-04	k: 111	n:350000
Cons ci ratio: 8.201017e-03	ci left: 3.933371e-01	ci right 3.965789e-01	k: 138235	n:350000
KS ci ratio: 5.599600e-01	ci left: 1.011200e-04	ci right 1.818275e-04	k: 48	n:350000
RGS14   350000 perm   111 sec   (3140 perm/sec)   p_kst 1.371429e-04   p_cons 3.949571e-01   p_joint 3.171429e-04

Joint ci ratio: 3.608056e-01	ci left: 2.687910e-04	ci right 3.894914e-04	k: 117	n:360000
Cons ci ratio: 8.084273e-03	ci left: 3.934803e-01	ci right 3.966769e-01	k: 142228	n:360000
KS ci ratio: 5.543324e-01	ci left: 1.006974e-04	ci right 1.799422e-04	k: 49	n:360000
RGS14   360000 perm   116 sec   (3106 perm/sec)   p_kst 1.361111e-04   p_cons 3.950778e-01   p_joint 3.250000e-04

Joint ci ratio: 3.592875e-01	ci left: 2.639845e-04	ci right 3.819110e-04	k: 118	n:370000
Cons ci ratio: 7.975215e-03	ci left: 3.934459e-01	ci right 3.965990e-01	k: 146158	n:370000
KS ci ratio: 5.543335e-01	ci left: 9.797580e-05	ci right 1.750790e-04	k: 49	n:370000
RGS14   370000 perm   120 sec   (3075 perm/sec)   p_kst 1.324324e-04   p_cons 3.950216e-01   p_joint 3.189189e-04

Joint ci ratio: 3.577884e-01	ci left: 2.594320e-04	ci right 3.747286e-04	k: 119	n:380000
Cons ci ratio: 7.870413e-03	ci left: 3.934163e-01	ci right 3.965274e-01	k: 150089	n:380000
KS ci ratio: 5.488722e-01	ci left: 9.766196e-05	ci right 1.734668e-04	k: 50	n:380000
RGS14   380000 perm   126 sec   (3025 perm/sec)   p_kst 1.315789e-04   p_cons 3.949711e-01   p_joint 3.131579e-04

Joint ci ratio: 3.563079e-01	ci left: 2.551139e-04	ci right 3.679135e-04	k: 120	n:390000
Cons ci ratio: 7.771428e-03	ci left: 3.932782e-01	ci right 3.963490e-01	k: 153977	n:390000
KS ci ratio: 5.435693e-01	ci left: 9.736778e-05	ci right 1.719338e-04	k: 51	n:390000
RGS14   390000 perm   130 sec   (2991 perm/sec)   p_kst 1.307692e-04   p_cons 3.948128e-01   p_joint 3.076923e-04

Joint ci ratio: 3.491659e-01	ci left: 2.601287e-04	ci right 3.723185e-04	k: 125	n:400000
Cons ci ratio: 7.671429e-03	ci left: 3.934371e-01	ci right 3.964694e-01	k: 157981	n:400000
KS ci ratio: 5.334078e-01	ci left: 9.925312e-05	ci right 1.733097e-04	k: 53	n:400000
RGS14   400000 perm   135 sec   (2958 perm/sec)   p_kst 1.325000e-04   p_cons 3.949525e-01   p_joint 3.125000e-04

Joint ci ratio: 3.437518e-01	ci left: 2.626915e-04	ci right 3.738392e-04	k: 129	n:410000
Cons ci ratio: 7.577551e-03	ci left: 3.934398e-01	ci right 3.964348e-01	k: 161924	n:410000
KS ci ratio: 5.285366e-01	ci left: 9.894409e-05	ci right 1.718460e-04	k: 54	n:410000
RGS14   410000 perm   140 sec   (2925 perm/sec)   p_kst 1.317073e-04   p_cons 3.949366e-01   p_joint 3.146341e-04

Joint ci ratio: 3.411382e-01	ci left: 2.607893e-04	ci right 3.701082e-04	k: 131	n:420000
Cons ci ratio: 7.479917e-03	ci left: 3.938971e-01	ci right 3.968568e-01	k: 166058	n:420000
KS ci ratio: 5.285375e-01	ci left: 9.658824e-05	ci right 1.677545e-04	k: 54	n:420000
RGS14   420000 perm   145 sec   (2890 perm/sec)   p_kst 1.285714e-04   p_cons 3.953762e-01   p_joint 3.119048e-04

Joint ci ratio: 3.312461e-01	ci left: 2.717592e-04	ci right 3.816697e-04	k: 139	n:430000
Cons ci ratio: 7.392710e-03	ci left: 3.938963e-01	ci right 3.968214e-01	k: 170004	n:430000
KS ci ratio: 5.146859e-01	ci left: 1.003997e-04	ci right 1.717411e-04	k: 57	n:430000
RGS14   430000 perm   150 sec   (2860 perm/sec)   p_kst 1.325581e-04   p_cons 3.953581e-01   p_joint 3.232558e-04

Joint ci ratio: 3.289056e-01	ci left: 2.697516e-04	ci right 3.779162e-04	k: 141	n:440000
Cons ci ratio: 7.308518e-03	ci left: 3.938935e-01	ci right 3.967851e-01	k: 173949	n:440000
KS ci ratio: 5.103057e-01	ci left: 1.000965e-04	ci right 1.704023e-04	k: 58	n:440000
RGS14   440000 perm   156 sec   (2829 perm/sec)   p_kst 1.318182e-04   p_cons 3.953386e-01   p_joint 3.204545e-04

Joint ci ratio: 3.266140e-01	ci left: 2.678359e-04	ci right 3.743270e-04	k: 143	n:450000
Cons ci ratio: 7.225391e-03	ci left: 3.940066e-01	ci right 3.968659e-01	k: 177946	n:450000
KS ci ratio: 5.060355e-01	ci left: 9.980930e-05	ci right 1.691206e-04	k: 59	n:450000
RGS14   450000 perm   161 sec   (2799 perm/sec)   p_kst 1.311111e-04   p_cons 3.954356e-01   p_joint 3.177778e-04

Joint ci ratio: 3.243697e-01	ci left: 2.660059e-04	ci right 3.708914e-04	k: 145	n:460000
Cons ci ratio: 7.150336e-03	ci left: 3.937607e-01	ci right 3.965884e-01	k: 181780	n:460000
KS ci ratio: 5.060363e-01	ci left: 9.763951e-05	ci right 1.654441e-04	k: 59	n:460000
RGS14   460000 perm   166 sec   (2769 perm/sec)   p_kst 1.282609e-04   p_cons 3.951739e-01   p_joint 3.152174e-04

Joint ci ratio: 3.221709e-01	ci left: 2.642562e-04	ci right 3.675996e-04	k: 147	n:470000
Cons ci ratio: 7.072404e-03	ci left: 3.938742e-01	ci right 3.966718e-01	k: 185778	n:470000
KS ci ratio: 5.018715e-01	ci left: 9.741907e-05	ci right 1.643202e-04	k: 60	n:470000
RGS14   470000 perm   172 sec   (2740 perm/sec)   p_kst 1.276596e-04   p_cons 3.952723e-01   p_joint 3.127660e-04

Joint ci ratio: 3.168624e-01	ci left: 2.683324e-04	ci right 3.711904e-04	k: 152	n:480000
Cons ci ratio: 7.000442e-03	ci left: 3.937457e-01	ci right 3.965139e-01	k: 189662	n:480000
KS ci ratio: 4.938407e-01	ci left: 9.903273e-05	ci right 1.655828e-04	k: 62	n:480000
RGS14   480000 perm   177 sec   (2713 perm/sec)   p_kst 1.291667e-04   p_cons 3.951292e-01   p_joint 3.166667e-04

Joint ci ratio: 3.088882e-01	ci left: 2.779014e-04	ci right 3.812189e-04	k: 160	n:490000
Cons ci ratio: 6.926521e-03	ci left: 3.939062e-01	ci right 3.966461e-01	k: 193685	n:490000
KS ci ratio: 4.861834e-01	ci left: 1.005888e-04	ci right 1.667859e-04	k: 64	n:490000
RGS14   490000 perm   182 sec   (2685 perm/sec)   p_kst 1.306122e-04   p_cons 3.952755e-01   p_joint 3.265306e-04

Joint ci ratio: 3.051209e-01	ci left: 2.797272e-04	ci right 3.822088e-04	k: 164	n:500000
Cons ci ratio: 6.857788e-03	ci left: 3.938585e-01	ci right 3.965707e-01	k: 197607	n:500000
KS ci ratio: 4.753370e-01	ci left: 1.038496e-04	ci right 1.701722e-04	k: 67	n:500000
RGS14   500000 perm   188 sec   (2660 perm/sec)   p_kst 1.340000e-04   p_cons 3.952140e-01   p_joint 3.280000e-04

Joint ci ratio: 3.023845e-01	ci left: 2.796764e-04	ci right 3.810438e-04	k: 167	n:510000
Cons ci ratio: 6.789781e-03	ci left: 3.939029e-01	ci right 3.965885e-01	k: 201575	n:510000
KS ci ratio: 4.718802e-01	ci left: 1.035400e-04	ci right 1.690288e-04	k: 68	n:510000
RGS14   510000 perm   194 sec   (2634 perm/sec)   p_kst 1.333333e-04   p_cons 3.952451e-01   p_joint 3.274510e-04

Joint ci ratio: 2.971244e-01	ci left: 2.849691e-04	ci right 3.861194e-04	k: 173	n:520000
Cons ci ratio: 6.723785e-03	ci left: 3.939439e-01	ci right 3.966035e-01	k: 205542	n:520000
KS ci ratio: 4.587687e-01	ci left: 1.083392e-04	ci right 1.743663e-04	k: 72	n:520000
RGS14   520000 perm   199 sec   (2608 perm/sec)   p_kst 1.384615e-04   p_cons 3.952731e-01   p_joint 3.326923e-04

Joint ci ratio: 2.954318e-01	ci left: 2.830854e-04	ci right 3.828874e-04	k: 175	n:530000
Cons ci ratio: 6.659676e-03	ci left: 3.939834e-01	ci right 3.966178e-01	k: 209509	n:530000
KS ci ratio: 4.556585e-01	ci left: 1.079644e-04	ci right 1.731791e-04	k: 73	n:530000
RGS14   530000 perm   205 sec   (2583 perm/sec)   p_kst 1.377358e-04   p_cons 3.953000e-01   p_joint 3.301887e-04

Joint ci ratio: 2.897254e-01	ci left: 2.898550e-04	ci right 3.897082e-04	k: 182	n:540000
Cons ci ratio: 6.598543e-03	ci left: 3.939364e-01	ci right 3.965462e-01	k: 213430	n:540000
KS ci ratio: 4.438201e-01	ci left: 1.125334e-04	ci right 1.782131e-04	k: 77	n:540000
RGS14   540000 perm   211 sec   (2557 perm/sec)   p_kst 1.425926e-04   p_cons 3.952407e-01   p_joint 3.370370e-04

Joint ci ratio: 2.881554e-01	ci left: 2.879577e-04	ci right 3.865219e-04	k: 184	n:550000
Cons ci ratio: 6.539460e-03	ci left: 3.938622e-01	ci right 3.964480e-01	k: 217335	n:550000
KS ci ratio: 4.438207e-01	ci left: 1.104873e-04	ci right 1.749729e-04	k: 77	n:550000
RGS14   550000 perm   217 sec   (2533 perm/sec)   p_kst 1.400000e-04   p_cons 3.951545e-01   p_joint 3.345455e-04

Joint ci ratio: 2.850897e-01	ci left: 2.894451e-04	ci right 3.872746e-04	k: 188	n:560000
Cons ci ratio: 6.482445e-03	ci left: 3.937532e-01	ci right 3.963157e-01	k: 221219	n:560000
KS ci ratio: 4.382376e-01	ci left: 1.116891e-04	ci right 1.758140e-04	k: 79	n:560000
RGS14   560000 perm   223 sec   (2510 perm/sec)   p_kst 1.410714e-04   p_cons 3.950339e-01   p_joint 3.357143e-04

Joint ci ratio: 2.828537e-01	ci left: 2.892555e-04	ci right 3.861173e-04	k: 191	n:570000
Cons ci ratio: 6.425857e-03	ci left: 3.937253e-01	ci right 3.962652e-01	k: 225147	n:570000
KS ci ratio: 4.328601e-01	ci left: 1.128536e-04	ci right 1.766208e-04	k: 81	n:570000
RGS14   570000 perm   229 sec   (2486 perm/sec)   p_kst 1.421053e-04   p_cons 3.949947e-01   p_joint 3.350877e-04

Joint ci ratio: 2.799524e-01	ci left: 2.906783e-04	ci right 3.868420e-04	k: 195	n:580000
Cons ci ratio: 6.371530e-03	ci left: 3.936382e-01	ci right 3.961560e-01	k: 229040	n:580000
KS ci ratio: 4.276757e-01	ci left: 1.139827e-04	ci right 1.773952e-04	k: 83	n:580000
RGS14   580000 perm   235 sec   (2463 perm/sec)   p_kst 1.431034e-04   p_cons 3.948966e-01   p_joint 3.362069e-04

Joint ci ratio: 2.737369e-01	ci left: 2.999472e-04	ci right 3.965954e-04	k: 204	n:590000
Cons ci ratio: 6.317258e-03	ci left: 3.936523e-01	ci right 3.961487e-01	k: 232991	n:590000
KS ci ratio: 4.251527e-01	ci left: 1.135637e-04	ci right 1.762643e-04	k: 84	n:590000
RGS14   590000 perm   242 sec   (2442 perm/sec)   p_kst 1.423729e-04   p_cons 3.949000e-01   p_joint 3.457627e-04

Joint ci ratio: 2.730722e-01	ci left: 2.965005e-04	ci right 3.917662e-04	k: 205	n:600000
Cons ci ratio: 6.264853e-03	ci left: 3.936278e-01	ci right 3.961032e-01	k: 236919	n:600000
KS ci ratio: 4.251532e-01	ci left: 1.116710e-04	ci right 1.733266e-04	k: 84	n:600000
RGS14   600000 perm   248 sec   (2421 perm/sec)   p_kst 1.400000e-04   p_cons 3.948650e-01   p_joint 3.416667e-04

Joint ci ratio: 2.691797e-01	ci left: 3.008074e-04	ci right 3.958467e-04	k: 211	n:610000
Cons ci ratio: 6.212131e-03	ci left: 3.937270e-01	ci right 3.961821e-01	k: 240922	n:610000
KS ci ratio: 4.154885e-01	ci left: 1.157041e-04	ci right 1.777322e-04	k: 88	n:610000
RGS14   610000 perm   254 sec   (2399 perm/sec)   p_kst 1.442623e-04   p_cons 3.949541e-01   p_joint 3.459016e-04

Joint ci ratio: 2.666755e-01	ci left: 3.019740e-04	ci right 3.963460e-04	k: 215	n:620000
Cons ci ratio: 6.161904e-03	ci left: 3.937313e-01	ci right 3.961665e-01	k: 244868	n:620000
KS ci ratio: 4.131740e-01	ci left: 1.152827e-04	ci right 1.766457e-04	k: 89	n:620000
RGS14   620000 perm   261 sec   (2378 perm/sec)   p_kst 1.435484e-04   p_cons 3.949484e-01   p_joint 3.467742e-04

Joint ci ratio: 2.624559e-01	ci left: 3.075552e-04	ci right 4.019009e-04	k: 222	n:630000
Cons ci ratio: 6.112347e-03	ci left: 3.937767e-01	ci right 3.961925e-01	k: 248840	n:630000
KS ci ratio: 4.042866e-01	ci left: 1.191492e-04	ci right 1.808403e-04	k: 93	n:630000
RGS14   630000 perm   267 sec   (2357 perm/sec)   p_kst 1.476190e-04   p_cons 3.949841e-01   p_joint 3.523810e-04

Joint ci ratio: 2.601332e-01	ci left: 3.085903e-04	ci right 4.022796e-04	k: 226	n:640000
Cons ci ratio: 6.064840e-03	ci left: 3.937521e-01	ci right 3.961489e-01	k: 252768	n:640000
KS ci ratio: 4.000530e-01	ci left: 1.200964e-04	ci right 1.814542e-04	k: 95	n:640000
RGS14   640000 perm   274 sec   (2336 perm/sec)   p_kst 1.484375e-04   p_cons 3.949500e-01   p_joint 3.531250e-04

Joint ci ratio: 2.589951e-01	ci left: 3.067195e-04	ci right 3.993674e-04	k: 228	n:650000
Cons ci ratio: 6.017474e-03	ci left: 3.938036e-01	ci right 3.961820e-01	k: 256745	n:650000
KS ci ratio: 3.959496e-01	ci left: 1.210177e-04	ci right 1.820459e-04	k: 97	n:650000
RGS14   650000 perm   280 sec   (2318 perm/sec)   p_kst 1.492308e-04   p_cons 3.949923e-01   p_joint 3.507692e-04

Joint ci ratio: 2.562128e-01	ci left: 3.091589e-04	ci right 4.013802e-04	k: 233	n:660000
Cons ci ratio: 5.970576e-03	ci left: 3.939036e-01	ci right 3.962640e-01	k: 260755	n:660000
KS ci ratio: 3.900244e-01	ci left: 1.232804e-04	ci right 1.842800e-04	k: 100	n:660000
RGS14   660000 perm   287 sec   (2300 perm/sec)   p_kst 1.515152e-04   p_cons 3.950833e-01   p_joint 3.530303e-04

Joint ci ratio: 2.125377e-01	ci left: 4.535482e-04	ci right 5.627864e-04	k: 339	n:670000
Cons ci ratio: 5.926108e-03	ci left: 3.938918e-01	ci right 3.962345e-01	k: 264692	n:670000
KS ci ratio: 3.862191e-01	ci left: 1.241342e-04	ci right 1.848045e-04	k: 102	n:670000
RGS14   670000 perm   294 sec   (2283 perm/sec)   p_kst 1.522388e-04   p_cons 3.950627e-01   p_joint 5.059701e-04

Joint ci ratio: 2.112986e-01	ci left: 4.524485e-04	ci right 5.607042e-04	k: 343	n:680000
Cons ci ratio: 5.883307e-03	ci left: 3.938246e-01	ci right 3.961498e-01	k: 268591	n:680000
KS ci ratio: 3.825230e-01	ci left: 1.249657e-04	ci right 1.853108e-04	k: 104	n:680000
RGS14   680000 perm   300 sec   (2265 perm/sec)   p_kst 1.529412e-04   p_cons 3.949868e-01   p_joint 5.044118e-04

Joint ci ratio: 2.097796e-01	ci left: 4.527556e-04	ci right 5.602060e-04	k: 348	n:690000
Cons ci ratio: 5.839950e-03	ci left: 3.938796e-01	ci right 3.961880e-01	k: 272573	n:690000
KS ci ratio: 3.807145e-01	ci left: 1.244648e-04	ci right 1.842128e-04	k: 105	n:690000
RGS14   690000 perm   307 sec   (2247 perm/sec)   p_kst 1.521739e-04   p_cons 3.950333e-01   p_joint 5.043478e-04

Joint ci ratio: 2.074153e-01	ci left: 4.571194e-04	ci right 5.642276e-04	k: 356	n:700000
Cons ci ratio: 5.796879e-03	ci left: 3.939873e-01	ci right 3.962793e-01	k: 276593	n:700000
KS ci ratio: 3.789315e-01	ci left: 1.239789e-04	ci right 1.831456e-04	k: 106	n:700000
RGS14   700000 perm   314 sec   (2229 perm/sec)   p_kst 1.514286e-04   p_cons 3.951329e-01   p_joint 5.085714e-04

Joint ci ratio: 2.059780e-01	ci left: 4.573588e-04	ci right 5.636869e-04	k: 361	n:710000
Cons ci ratio: 5.755850e-03	ci left: 3.940006e-01	ci right 3.962763e-01	k: 280548	n:710000
KS ci ratio: 3.771732e-01	ci left: 1.235073e-04	ci right 1.821078e-04	k: 107	n:710000
RGS14   710000 perm   321 sec   (2209 perm/sec)   p_kst 1.507042e-04   p_cons 3.951380e-01   p_joint 5.084507e-04

Joint ci ratio: 2.056946e-01	ci left: 4.523238e-04	ci right 5.573185e-04	k: 362	n:720000
Cons ci ratio: 5.714699e-03	ci left: 3.940955e-01	ci right 3.963554e-01	k: 284562	n:720000
KS ci ratio: 3.771736e-01	ci left: 1.217919e-04	ci right 1.795785e-04	k: 107	n:720000
RGS14   720000 perm   329 sec   (2190 perm/sec)   p_kst 1.486111e-04   p_cons 3.952250e-01   p_joint 5.027778e-04

Joint ci ratio: 2.048502e-01	ci left: 4.500259e-04	ci right 5.540046e-04	k: 365	n:730000
Cons ci ratio: 5.676191e-03	ci left: 3.940385e-01	ci right 3.962829e-01	k: 288467	n:730000
KS ci ratio: 3.754396e-01	ci left: 1.213638e-04	ci right 1.786174e-04	k: 108	n:730000
RGS14   730000 perm   336 sec   (2173 perm/sec)   p_kst 1.479452e-04   p_cons 3.951603e-01   p_joint 5.000000e-04

Joint ci ratio: 2.034651e-01	ci left: 4.503558e-04	ci right 5.536198e-04	k: 370	n:740000
Cons ci ratio: 5.637941e-03	ci left: 3.940264e-01	ci right 3.962555e-01	k: 292404	n:740000
KS ci ratio: 3.737293e-01	ci left: 1.209479e-04	ci right 1.776817e-04	k: 109	n:740000
RGS14   740000 perm   343 sec   (2157 perm/sec)   p_kst 1.472973e-04   p_cons 3.951405e-01   p_joint 5.000000e-04

Joint ci ratio: 2.013059e-01	ci left: 4.544773e-04	ci right 5.574445e-04	k: 378	n:750000
Cons ci ratio: 5.600750e-03	ci left: 3.939893e-01	ci right 3.962035e-01	k: 296322	n:750000
KS ci ratio: 3.720422e-01	ci left: 1.205437e-04	ci right 1.767703e-04	k: 110	n:750000
RGS14   750000 perm   350 sec   (2140 perm/sec)   p_kst 1.466667e-04   p_cons 3.950960e-01   p_joint 5.040000e-04

Joint ci ratio: 1.994719e-01	ci left: 4.572458e-04	ci right 5.597817e-04	k: 385	n:760000
Cons ci ratio: 5.564026e-03	ci left: 3.939757e-01	ci right 3.961751e-01	k: 300257	n:760000
KS ci ratio: 3.703776e-01	ci left: 1.201506e-04	ci right 1.758824e-04	k: 111	n:760000
RGS14   760000 perm   358 sec   (2124 perm/sec)   p_kst 1.460526e-04   p_cons 3.950750e-01   p_joint 5.065789e-04

Joint ci ratio: 1.984465e-01	ci left: 4.562435e-04	ci right 5.579651e-04	k: 389	n:770000
Cons ci ratio: 5.527669e-03	ci left: 3.939922e-01	ci right 3.961774e-01	k: 304215	n:770000
KS ci ratio: 3.687353e-01	ci left: 1.197683e-04	ci right 1.750170e-04	k: 112	n:770000
RGS14   770000 perm   365 sec   (2108 perm/sec)   p_kst 1.454545e-04   p_cons 3.950844e-01   p_joint 5.051948e-04

Joint ci ratio: 1.974367e-01	ci left: 4.552683e-04	ci right 5.561938e-04	k: 393	n:780000
Cons ci ratio: 5.492266e-03	ci left: 3.939866e-01	ci right 3.961577e-01	k: 308156	n:780000
KS ci ratio: 3.671146e-01	ci left: 1.193963e-04	ci right 1.741733e-04	k: 113	n:780000
RGS14   780000 perm   373 sec   (2091 perm/sec)   p_kst 1.448718e-04   p_cons 3.950718e-01   p_joint 5.038462e-04

Joint ci ratio: 1.961958e-01	ci left: 4.555227e-04	ci right 5.557939e-04	k: 398	n:790000
Cons ci ratio: 5.457260e-03	ci left: 3.940053e-01	ci right 3.961626e-01	k: 312116	n:790000
KS ci ratio: 3.671149e-01	ci left: 1.178849e-04	ci right 1.719686e-04	k: 113	n:790000
RGS14   790000 perm   381 sec   (2076 perm/sec)   p_kst 1.430380e-04   p_cons 3.950835e-01   p_joint 5.037975e-04

Joint ci ratio: 1.947369e-01	ci left: 4.569616e-04	ci right 5.567130e-04	k: 404	n:800000
Cons ci ratio: 5.422235e-03	ci left: 3.940835e-01	ci right 3.962273e-01	k: 316124	n:800000
KS ci ratio: 3.671152e-01	ci left: 1.164114e-04	ci right 1.698190e-04	k: 113	n:800000
RGS14   800000 perm   388 sec   (2061 perm/sec)   p_kst 1.412500e-04   p_cons 3.951550e-01   p_joint 5.050000e-04

Joint ci ratio: 1.942582e-01	ci left: 4.536690e-04	ci right 5.524294e-04	k: 406	n:810000
Cons ci ratio: 5.387736e-03	ci left: 3.941721e-01	ci right 3.963027e-01	k: 320142	n:810000
KS ci ratio: 3.655157e-01	ci left: 1.160951e-04	ci right 1.690702e-04	k: 114	n:810000
RGS14   810000 perm   396 sec   (2046 perm/sec)   p_kst 1.407407e-04   p_cons 3.952370e-01   p_joint 5.012346e-04

Joint ci ratio: 1.935465e-01	ci left: 4.516173e-04	ci right 5.495284e-04	k: 409	n:820000
Cons ci ratio: 5.354174e-03	ci left: 3.942330e-01	ci right 3.963507e-01	k: 324139	n:820000
KS ci ratio: 3.639369e-01	ci left: 1.157871e-04	ci right 1.683392e-04	k: 115	n:820000
RGS14   820000 perm   404 sec   (2032 perm/sec)   p_kst 1.402439e-04   p_cons 3.952915e-01   p_joint 4.987805e-04

Joint ci ratio: 2.317544e-01	ci left: 3.046673e-04	ci right 3.856337e-04	k: 285	n:830000
Cons ci ratio: 5.322357e-03	ci left: 3.941913e-01	ci right 3.962961e-01	k: 328052	n:830000
KS ci ratio: 3.639372e-01	ci left: 1.143920e-04	ci right 1.663110e-04	k: 115	n:830000
RGS14   830000 perm   411 sec   (2017 perm/sec)   p_kst 1.385542e-04   p_cons 3.952434e-01   p_joint 3.433735e-04

Joint ci ratio: 2.313506e-01	ci left: 3.021617e-04	ci right 3.823023e-04	k: 286	n:840000
Cons ci ratio: 5.290561e-03	ci left: 3.941995e-01	ci right 3.962917e-01	k: 332006	n:840000
KS ci ratio: 3.623787e-01	ci left: 1.141121e-04	ci right 1.656298e-04	k: 116	n:840000
RGS14   840000 perm   419 sec   (2003 perm/sec)   p_kst 1.380952e-04   p_cons 3.952452e-01   p_joint 3.404762e-04

Joint ci ratio: 2.289692e-01	ci left: 3.052587e-04	ci right 3.852697e-04	k: 292	n:850000
Cons ci ratio: 5.259639e-03	ci left: 3.941793e-01	ci right 3.962591e-01	k: 335936	n:850000
KS ci ratio: 3.608400e-01	ci left: 1.138392e-04	ci right 1.649641e-04	k: 117	n:850000
RGS14   850000 perm   427 sec   (1989 perm/sec)   p_kst 1.376471e-04   p_cons 3.952188e-01   p_joint 3.435294e-04

Joint ci ratio: 2.278060e-01	ci left: 3.049980e-04	ci right 3.844774e-04	k: 295	n:860000
Cons ci ratio: 5.228464e-03	ci left: 3.942316e-01	ci right 3.962993e-01	k: 339928	n:860000
KS ci ratio: 3.593207e-01	ci left: 1.135730e-04	ci right 1.643135e-04	k: 118	n:860000
RGS14   860000 perm   436 sec   (1974 perm/sec)   p_kst 1.372093e-04   p_cons 3.952651e-01   p_joint 3.430233e-04

Joint ci ratio: 2.266604e-01	ci left: 3.047443e-04	ci right 3.837024e-04	k: 298	n:870000
Cons ci ratio: 5.198049e-03	ci left: 3.942632e-01	ci right 3.963191e-01	k: 343903	n:870000
KS ci ratio: 3.578205e-01	ci left: 1.133135e-04	ci right 1.636774e-04	k: 119	n:870000
RGS14   870000 perm   444 sec   (1960 perm/sec)   p_kst 1.367816e-04   p_cons 3.952908e-01   p_joint 3.425287e-04

Joint ci ratio: 2.262826e-01	ci left: 3.023531e-04	ci right 3.805429e-04	k: 299	n:880000
Cons ci ratio: 5.169535e-03	ci left: 3.941670e-01	ci right 3.962110e-01	k: 347766	n:880000
KS ci ratio: 3.563389e-01	ci left: 1.130603e-04	ci right 1.630553e-04	k: 120	n:880000
RGS14   880000 perm   452 sec   (1946 perm/sec)   p_kst 1.363636e-04   p_cons 3.951886e-01   p_joint 3.397727e-04

Joint ci ratio: 2.255323e-01	ci left: 3.010759e-04	ci right 3.786413e-04	k: 301	n:890000
Cons ci ratio: 5.140784e-03	ci left: 3.941380e-01	ci right 3.961705e-01	k: 351687	n:890000
KS ci ratio: 3.548756e-01	ci left: 1.128131e-04	ci right 1.624468e-04	k: 121	n:890000
RGS14   890000 perm   461 sec   (1932 perm/sec)   p_kst 1.359551e-04   p_cons 3.951539e-01   p_joint 3.382022e-04

Joint ci ratio: 2.244204e-01	ci left: 3.008761e-04	ci right 3.779551e-04	k: 304	n:900000
Cons ci ratio: 5.112139e-03	ci left: 3.941442e-01	ci right 3.961654e-01	k: 355639	n:900000
KS ci ratio: 3.534301e-01	ci left: 1.125719e-04	ci right 1.618514e-04	k: 122	n:900000
RGS14   900000 perm   469 sec   (1919 perm/sec)   p_kst 1.355556e-04   p_cons 3.951544e-01   p_joint 3.377778e-04

Joint ci ratio: 2.236884e-01	ci left: 2.996442e-04	ci right 3.761227e-04	k: 306	n:910000
Cons ci ratio: 5.083652e-03	ci left: 3.941799e-01	ci right 3.961900e-01	k: 359618	n:910000
KS ci ratio: 3.534304e-01	ci left: 1.113349e-04	ci right 1.600728e-04	k: 122	n:910000
RGS14   910000 perm   477 sec   (1906 perm/sec)   p_kst 1.340659e-04   p_cons 3.951846e-01   p_joint 3.362637e-04

Joint ci ratio: 2.218885e-01	ci left: 3.015188e-04	ci right 3.777719e-04	k: 311	n:920000
Cons ci ratio: 5.055544e-03	ci left: 3.942236e-01	ci right 3.962227e-01	k: 363605	n:920000
KS ci ratio: 3.534307e-01	ci left: 1.101247e-04	ci right 1.583329e-04	k: 122	n:920000
RGS14   920000 perm   486 sec   (1894 perm/sec)   p_kst 1.326087e-04   p_cons 3.952228e-01   p_joint 3.380435e-04

Joint ci ratio: 2.211809e-01	ci left: 3.003078e-04	ci right 3.759796e-04	k: 313	n:930000
Cons ci ratio: 5.029266e-03	ci left: 3.941363e-01	ci right 3.961246e-01	k: 367471	n:930000
KS ci ratio: 3.534309e-01	ci left: 1.089405e-04	ci right 1.566304e-04	k: 122	n:930000
RGS14   930000 perm   494 sec   (1881 perm/sec)   p_kst 1.311828e-04   p_cons 3.951301e-01   p_joint 3.365591e-04

Joint ci ratio: 2.187556e-01	ci left: 3.041497e-04	ci right 3.798361e-04	k: 320	n:940000
Cons ci ratio: 5.002369e-03	ci left: 3.941487e-01	ci right 3.961264e-01	k: 371429	n:940000
KS ci ratio: 3.491978e-01	ci left: 1.106915e-04	ci right 1.584361e-04	k: 125	n:940000
RGS14   940000 perm   503 sec   (1869 perm/sec)   p_kst 1.329787e-04   p_cons 3.951372e-01   p_joint 3.404255e-04

Joint ci ratio: 2.174052e-01	ci left: 3.049287e-04	ci right 3.802780e-04	k: 324	n:950000
Cons ci ratio: 4.976271e-03	ci left: 3.941251e-01	ci right 3.960923e-01	k: 375353	n:950000
KS ci ratio: 3.464588e-01	ci left: 1.114477e-04	ci right 1.590568e-04	k: 127	n:950000
RGS14   950000 perm   512 sec   (1856 perm/sec)   p_kst 1.336842e-04   p_cons 3.951084e-01   p_joint 3.410526e-04

Joint ci ratio: 2.164087e-01	ci left: 3.047075e-04	ci right 3.796113e-04	k: 327	n:960000
Cons ci ratio: 4.950329e-03	ci left: 3.941260e-01	ci right 3.960829e-01	k: 379300	n:960000
KS ci ratio: 3.451134e-01	ci left: 1.112380e-04	ci right 1.585318e-04	k: 128	n:960000
RGS14   960000 perm   521 sec   (1844 perm/sec)   p_kst 1.333333e-04   p_cons 3.951042e-01   p_joint 3.406250e-04

Joint ci ratio: 2.160798e-01	ci left: 3.025413e-04	ci right 3.767845e-04	k: 328	n:970000
Cons ci ratio: 4.924651e-03	ci left: 3.941403e-01	ci right 3.960871e-01	k: 383260	n:970000
KS ci ratio: 3.437835e-01	ci left: 1.110329e-04	ci right 1.580172e-04	k: 129	n:970000
RGS14   970000 perm   529 sec   (1832 perm/sec)   p_kst 1.329897e-04   p_cons 3.951134e-01   p_joint 3.381443e-04

Joint ci ratio: 2.154262e-01	ci left: 3.013847e-04	ci right 3.750907e-04	k: 330	n:980000
Cons ci ratio: 4.899744e-03	ci left: 3.941176e-01	ci right 3.960544e-01	k: 387184	n:980000
KS ci ratio: 3.437838e-01	ci left: 1.098999e-04	ci right 1.564048e-04	k: 129	n:980000
RGS14   980000 perm   538 sec   (1820 perm/sec)   p_kst 1.316327e-04   p_cons 3.950857e-01   p_joint 3.367347e-04

Joint ci ratio: 2.141361e-01	ci left: 3.021635e-04	ci right 3.755593e-04	k: 334	n:990000
Cons ci ratio: 4.874986e-03	ci left: 3.941176e-01	ci right 3.960446e-01	k: 391130	n:990000
KS ci ratio: 3.411693e-01	ci left: 1.106363e-04	ci right 1.570182e-04	k: 131	n:990000
RGS14   990000 perm   548 sec   (1806 perm/sec)   p_kst 1.323232e-04   p_cons 3.950808e-01   p_joint 3.373737e-04

Joint ci ratio: 2.134999e-01	ci left: 3.010347e-04	ci right 3.739107e-04	k: 336	n:1000000
Cons ci ratio: 4.849543e-03	ci left: 3.942216e-01	ci right 3.961390e-01	k: 395180	n:1000000
KS ci ratio: 3.398843e-01	ci left: 1.104444e-04	ci right 1.565332e-04	k: 132	n:1000000
RGS14   1000000 perm   557 sec   (1795 perm/sec)   p_kst 1.320000e-04   p_cons 3.951800e-01   p_joint 3.360000e-04

Joint ci ratio: 2.119333e-01	ci left: 3.027410e-04	ci right 3.754224e-04	k: 341	n:1010000
Cons ci ratio: 4.825094e-03	ci left: 3.942642e-01	ci right 3.961721e-01	k: 399170	n:1010000
KS ci ratio: 3.361144e-01	ci left: 1.120692e-04	ci right 1.582048e-04	k: 135	n:1010000
RGS14   1010000 perm   566 sec   (1783 perm/sec)   p_kst 1.336634e-04   p_cons 3.952178e-01   p_joint 3.376238e-04

Joint ci ratio: 2.100981e-01	ci left: 3.053445e-04	ci right 3.779344e-04	k: 347	n:1020000
Cons ci ratio: 4.801218e-03	ci left: 3.942853e-01	ci right 3.961839e-01	k: 403139	n:1020000
KS ci ratio: 3.324672e-01	ci left: 1.136648e-04	ci right 1.598409e-04	k: 138	n:1020000
RGS14   1020000 perm   576 sec   (1771 perm/sec)   p_kst 1.352941e-04   p_cons 3.952343e-01   p_joint 3.401961e-04

Joint ci ratio: 2.080160e-01	ci left: 3.088204e-04	ci right 3.814165e-04	k: 354	n:1030000
Cons ci ratio: 4.779071e-03	ci left: 3.941683e-01	ci right 3.960575e-01	k: 406966	n:1030000
KS ci ratio: 3.289363e-01	ci left: 1.152321e-04	ci right 1.614426e-04	k: 141	n:1030000
RGS14   1030000 perm   585 sec   (1760 perm/sec)   p_kst 1.368932e-04   p_cons 3.951126e-01   p_joint 3.436893e-04

Joint ci ratio: 2.062799e-01	ci left: 3.113210e-04	ci right 3.838170e-04	k: 360	n:1040000
Cons ci ratio: 4.755830e-03	ci left: 3.941939e-01	ci right 3.960740e-01	k: 410939	n:1040000
KS ci ratio: 3.255154e-01	ci left: 1.167718e-04	ci right 1.630110e-04	k: 144	n:1040000
RGS14   1040000 perm   594 sec   (1749 perm/sec)   p_kst 1.384615e-04   p_cons 3.951337e-01   p_joint 3.461538e-04

Joint ci ratio: 1.707149e-01	ci left: 4.590602e-04	ci right 5.456387e-04	k: 526	n:1050000
Cons ci ratio: 4.732623e-03	ci left: 3.942495e-01	ci right 3.961206e-01	k: 414944	n:1050000
KS ci ratio: 3.243988e-01	ci left: 1.165344e-04	ci right 1.624883e-04	k: 145	n:1050000
RGS14   1050000 perm   604 sec   (1739 perm/sec)   p_kst 1.380952e-04   p_cons 3.951848e-01   p_joint 5.009524e-04

Joint ci ratio: 2.037554e-01	ci left: 3.135017e-04	ci right 3.855010e-04	k: 369	n:1060000
Cons ci ratio: 4.709278e-03	ci left: 3.943521e-01	ci right 3.962145e-01	k: 419000	n:1060000
KS ci ratio: 3.232936e-01	ci left: 1.163017e-04	ci right 1.619752e-04	k: 146	n:1060000
RGS14   1060000 perm   613 sec   (1728 perm/sec)   p_kst 1.377358e-04   p_cons 3.952830e-01   p_joint 3.481132e-04

Joint ci ratio: 2.021229e-01	ci left: 3.158944e-04	ci right 3.877902e-04	k: 375	n:1070000
Cons ci ratio: 4.687631e-03	ci left: 3.943146e-01	ci right 3.961682e-01	k: 422908	n:1070000
KS ci ratio: 3.211164e-01	ci left: 1.169328e-04	ci right 1.624812e-04	k: 148	n:1070000
RGS14   1070000 perm   623 sec   (1718 perm/sec)   p_kst 1.383178e-04   p_cons 3.952411e-01   p_joint 3.504673e-04

Joint ci ratio: 2.013214e-01	ci left: 3.156069e-04	ci right 3.871174e-04	k: 378	n:1080000
Cons ci ratio: 4.664582e-03	ci left: 3.944518e-01	ci right 3.962969e-01	k: 427004	n:1080000
KS ci ratio: 3.189826e-01	ci left: 1.175532e-04	ci right 1.629769e-04	k: 150	n:1080000
RGS14   1080000 perm   633 sec   (1707 perm/sec)   p_kst 1.388889e-04   p_cons 3.953741e-01   p_joint 3.500000e-04

Joint ci ratio: 2.010566e-01	ci left: 3.135826e-04	ci right 3.845295e-04	k: 379	n:1090000
Cons ci ratio: 4.643748e-03	ci left: 3.943930e-01	ci right 3.962296e-01	k: 430889	n:1090000
KS ci ratio: 3.179317e-01	ci left: 1.173188e-04	ci right 1.624722e-04	k: 151	n:1090000
RGS14   1090000 perm   642 sec   (1697 perm/sec)   p_kst 1.385321e-04   p_cons 3.953110e-01   p_joint 3.477064e-04

Joint ci ratio: 2.007928e-01	ci left: 3.115952e-04	ci right 3.819886e-04	k: 380	n:1100000
Cons ci ratio: 4.622953e-03	ci left: 3.943598e-01	ci right 3.961880e-01	k: 434801	n:1100000
KS ci ratio: 3.168910e-01	ci left: 1.170890e-04	ci right 1.619765e-04	k: 152	n:1100000
RGS14   1100000 perm   652 sec   (1686 perm/sec)   p_kst 1.381818e-04   p_cons 3.952736e-01   p_joint 3.454545e-04

Joint ci ratio: 2.005300e-01	ci left: 3.096436e-04	ci right 3.794934e-04	k: 381	n:1110000
Cons ci ratio: 4.602106e-03	ci left: 3.943615e-01	ci right 3.961814e-01	k: 438751	n:1110000
KS ci ratio: 3.158605e-01	ci left: 1.168635e-04	ci right 1.614894e-04	k: 153	n:1110000
RGS14   1110000 perm   662 sec   (1676 perm/sec)   p_kst 1.378378e-04   p_cons 3.952712e-01   p_joint 3.432432e-04

Joint ci ratio: 2.002683e-01	ci left: 3.077270e-04	ci right 3.770427e-04	k: 382	n:1120000
Cons ci ratio: 4.581923e-03	ci left: 3.943230e-01	ci right 3.961347e-01	k: 442656	n:1120000
KS ci ratio: 3.148400e-01	ci left: 1.166423e-04	ci right 1.610109e-04	k: 154	n:1120000
RGS14   1120000 perm   672 sec   (1666 perm/sec)   p_kst 1.375000e-04   p_cons 3.952286e-01   p_joint 3.410714e-04

Joint ci ratio: 1.994886e-01	ci left: 3.075257e-04	ci right 3.764936e-04	k: 385	n:1130000
Cons ci ratio: 4.562231e-03	ci left: 3.942613e-01	ci right 3.960649e-01	k: 446534	n:1130000
KS ci ratio: 3.138294e-01	ci left: 1.164252e-04	ci right 1.605405e-04	k: 155	n:1130000
RGS14   1130000 perm   682 sec   (1656 perm/sec)   p_kst 1.371681e-04   p_cons 3.951628e-01   p_joint 3.407080e-04

Joint ci ratio: 1.982088e-01	ci left: 3.089958e-04	ci right 3.777951e-04	k: 390	n:1140000
Cons ci ratio: 4.541816e-03	ci left: 3.943033e-01	ci right 3.960990e-01	k: 450529	n:1140000
KS ci ratio: 3.118367e-01	ci left: 1.170206e-04	ci right 1.610239e-04	k: 157	n:1140000
RGS14   1140000 perm   692 sec   (1646 perm/sec)   p_kst 1.377193e-04   p_cons 3.952009e-01   p_joint 3.421053e-04

Joint ci ratio: 1.972026e-01	ci left: 3.096149e-04	ci right 3.781601e-04	k: 394	n:1150000
Cons ci ratio: 4.521639e-03	ci left: 3.943480e-01	ci right 3.961360e-01	k: 454528	n:1150000
KS ci ratio: 3.098815e-01	ci left: 1.176065e-04	ci right 1.614981e-04	k: 159	n:1150000
RGS14   1150000 perm   702 sec   (1637 perm/sec)   p_kst 1.382609e-04   p_cons 3.952417e-01   p_joint 3.426087e-04

Joint ci ratio: 1.967054e-01	ci left: 3.085850e-04	ci right 3.767092e-04	k: 396	n:1160000
Cons ci ratio: 4.502785e-03	ci left: 3.942800e-01	ci right 3.960602e-01	k: 458397	n:1160000
KS ci ratio: 3.098817e-01	ci left: 1.165926e-04	ci right 1.601059e-04	k: 159	n:1160000
RGS14   1160000 perm   712 sec   (1628 perm/sec)   p_kst 1.370690e-04   p_cons 3.951698e-01   p_joint 3.413793e-04

Joint ci ratio: 1.964583e-01	ci left: 3.067601e-04	ci right 3.743862e-04	k: 397	n:1170000
Cons ci ratio: 4.483763e-03	ci left: 3.942559e-01	ci right 3.960284e-01	k: 462316	n:1170000
KS ci ratio: 3.098819e-01	ci left: 1.155961e-04	ci right 1.587375e-04	k: 159	n:1170000
RGS14   1170000 perm   723 sec   (1619 perm/sec)   p_kst 1.358974e-04   p_cons 3.951419e-01   p_joint 3.393162e-04

Joint ci ratio: 1.959667e-01	ci left: 3.057721e-04	ci right 3.729915e-04	k: 399	n:1180000
Cons ci ratio: 4.465146e-03	ci left: 3.942144e-01	ci right 3.959794e-01	k: 466214	n:1180000
KS ci ratio: 3.098821e-01	ci left: 1.146165e-04	ci right 1.573922e-04	k: 159	n:1180000
RGS14   1180000 perm   733 sec   (1610 perm/sec)   p_kst 1.347458e-04   p_cons 3.950966e-01   p_joint 3.381356e-04

Joint ci ratio: 1.949941e-01	ci left: 3.063994e-04	ci right 3.733828e-04	k: 403	n:1190000
Cons ci ratio: 4.446791e-03	ci left: 3.941702e-01	ci right 3.959277e-01	k: 470108	n:1190000
KS ci ratio: 3.079632e-01	ci left: 1.152037e-04	ci right 1.578802e-04	k: 161	n:1190000
RGS14   1190000 perm   743 sec   (1601 perm/sec)   p_kst 1.352941e-04   p_cons 3.950487e-01   p_joint 3.386555e-04

Joint ci ratio: 1.942742e-01	ci left: 3.062242e-04	ci right 3.728929e-04	k: 406	n:1200000
Cons ci ratio: 4.428707e-03	ci left: 3.941219e-01	ci right 3.958720e-01	k: 473996	n:1200000
KS ci ratio: 3.060795e-01	ci left: 1.157820e-04	ci right 1.583591e-04	k: 163	n:1200000
RGS14   1200000 perm   754 sec   (1591 perm/sec)   p_kst 1.358333e-04   p_cons 3.949967e-01   p_joint 3.383333e-04

Joint ci ratio: 1.928576e-01	ci left: 3.084119e-04	ci right 3.750098e-04	k: 412	n:1210000
Cons ci ratio: 4.410551e-03	ci left: 3.941057e-01	ci right 3.958485e-01	k: 477922	n:1210000
KS ci ratio: 3.051507e-01	ci left: 1.155882e-04	ci right 1.579400e-04	k: 164	n:1210000
RGS14   1210000 perm   765 sec   (1582 perm/sec)   p_kst 1.355372e-04   p_cons 3.949769e-01   p_joint 3.404959e-04

Joint ci ratio: 1.921610e-01	ci left: 3.082244e-04	ci right 3.745134e-04	k: 415	n:1220000
Cons ci ratio: 4.392082e-03	ci left: 3.941480e-01	ci right 3.958837e-01	k: 481919	n:1220000
KS ci ratio: 3.042302e-01	ci left: 1.153978e-04	ci right 1.575276e-04	k: 165	n:1220000
RGS14   1220000 perm   776 sec   (1573 perm/sec)   p_kst 1.352459e-04   p_cons 3.950156e-01   p_joint 3.401639e-04

Joint ci ratio: 1.917008e-01	ci left: 3.072664e-04	ci right 3.731726e-04	k: 417	n:1230000
Cons ci ratio: 4.374200e-03	ci left: 3.941506e-01	ci right 3.958792e-01	k: 485868	n:1230000
KS ci ratio: 3.033180e-01	ci left: 1.152106e-04	ci right 1.571216e-04	k: 166	n:1230000
RGS14   1230000 perm   786 sec   (1564 perm/sec)   p_kst 1.349593e-04   p_cons 3.950146e-01   p_joint 3.390244e-04

Joint ci ratio: 1.912439e-01	ci left: 3.063240e-04	ci right 3.718533e-04	k: 419	n:1240000
Cons ci ratio: 4.356373e-03	ci left: 3.941709e-01	ci right 3.958925e-01	k: 489839	n:1240000
KS ci ratio: 3.015178e-01	ci left: 1.157720e-04	ci right 1.575894e-04	k: 168	n:1240000
RGS14   1240000 perm   797 sec   (1555 perm/sec)   p_kst 1.354839e-04   p_cons 3.950315e-01   p_joint 3.379032e-04

Joint ci ratio: 1.896696e-01	ci left: 3.092065e-04	ci right 3.747451e-04	k: 426	n:1250000
Cons ci ratio: 4.338850e-03	ci left: 3.941813e-01	ci right 3.958960e-01	k: 493798	n:1250000
KS ci ratio: 3.006297e-01	ci left: 1.155854e-04	ci right 1.571890e-04	k: 169	n:1250000
RGS14   1250000 perm   808 sec   (1546 perm/sec)   p_kst 1.352000e-04   p_cons 3.950384e-01   p_joint 3.408000e-04

Joint ci ratio: 1.885687e-01	ci left: 3.105328e-04	ci right 3.759268e-04	k: 431	n:1260000
Cons ci ratio: 4.322096e-03	ci left: 3.941296e-01	ci right 3.958375e-01	k: 497679	n:1260000
KS ci ratio: 2.980115e-01	ci left: 1.168703e-04	ci right 1.585006e-04	k: 172	n:1260000
RGS14   1260000 perm   819 sec   (1538 perm/sec)   p_kst 1.365079e-04   p_cons 3.949833e-01   p_joint 3.420635e-04

Joint ci ratio: 1.883510e-01	ci left: 3.088379e-04	ci right 3.737913e-04	k: 432	n:1270000
Cons ci ratio: 4.305258e-03	ci left: 3.941095e-01	ci right 3.958107e-01	k: 501599	n:1270000
KS ci ratio: 2.980117e-01	ci left: 1.159500e-04	ci right 1.572526e-04	k: 172	n:1270000
RGS14   1270000 perm   830 sec   (1530 perm/sec)   p_kst 1.354331e-04   p_cons 3.949598e-01   p_joint 3.401575e-04

Joint ci ratio: 1.877019e-01	ci left: 3.086586e-04	ci right 3.733250e-04	k: 435	n:1280000
Cons ci ratio: 4.288131e-03	ci left: 3.941436e-01	ci right 3.958381e-01	k: 505588	n:1280000
KS ci ratio: 2.971541e-01	ci left: 1.157671e-04	ci right 1.568635e-04	k: 173	n:1280000
RGS14   1280000 perm   841 sec   (1522 perm/sec)   p_kst 1.351562e-04   p_cons 3.949906e-01   p_joint 3.398437e-04

Joint ci ratio: 1.872730e-01	ci left: 3.077435e-04	ci right 3.720541e-04	k: 437	n:1290000
Cons ci ratio: 4.271443e-03	ci left: 3.941508e-01	ci right 3.958388e-01	k: 509543	n:1290000
KS ci ratio: 2.954608e-01	ci left: 1.163048e-04	ci right 1.573128e-04	k: 175	n:1290000
RGS14   1290000 perm   852 sec   (1514 perm/sec)   p_kst 1.356589e-04   p_cons 3.949946e-01   p_joint 3.387597e-04

Joint ci ratio: 1.864236e-01	ci left: 3.083092e-04	ci right 3.724128e-04	k: 441	n:1300000
Cons ci ratio: 4.255106e-03	ci left: 3.941403e-01	ci right 3.958217e-01	k: 513475	n:1300000
KS ci ratio: 2.937962e-01	ci left: 1.168350e-04	ci right 1.577545e-04	k: 177	n:1300000
RGS14   1300000 perm   863 sec   (1506 perm/sec)   p_kst 1.361538e-04   p_cons 3.949808e-01   p_joint 3.392308e-04

Joint ci ratio: 1.862133e-01	ci left: 3.066834e-04	ci right 3.703689e-04	k: 442	n:1310000
Cons ci ratio: 4.238535e-03	ci left: 3.941772e-01	ci right 3.958522e-01	k: 517469	n:1310000
KS ci ratio: 2.937963e-01	ci left: 1.159431e-04	ci right 1.565503e-04	k: 177	n:1310000
RGS14   1310000 perm   875 sec   (1497 perm/sec)   p_kst 1.351145e-04   p_cons 3.950145e-01   p_joint 3.374046e-04

Joint ci ratio: 1.851711e-01	ci left: 3.079719e-04	ci right 3.715268e-04	k: 447	n:1320000
Cons ci ratio: 4.222798e-03	ci left: 3.941409e-01	ci right 3.958095e-01	k: 521367	n:1320000
KS ci ratio: 2.929746e-01	ci left: 1.157666e-04	ci right 1.561775e-04	k: 178	n:1320000
RGS14   1320000 perm   887 sec   (1489 perm/sec)   p_kst 1.348485e-04   p_cons 3.949750e-01   p_joint 3.386364e-04

Joint ci ratio: 1.847592e-01	ci left: 3.070904e-04	ci right 3.703067e-04	k: 449	n:1330000
Cons ci ratio: 4.207573e-03	ci left: 3.940668e-01	ci right 3.957291e-01	k: 525214	n:1330000
KS ci ratio: 2.929747e-01	ci left: 1.148961e-04	ci right 1.550032e-04	k: 178	n:1330000
RGS14   1330000 perm   898 sec   (1481 perm/sec)   p_kst 1.338346e-04   p_cons 3.948977e-01   p_joint 3.375940e-04

Joint ci ratio: 1.843501e-01	ci left: 3.062223e-04	ci right 3.691047e-04	k: 451	n:1340000
Cons ci ratio: 4.191804e-03	ci left: 3.940744e-01	ci right 3.957305e-01	k: 529169	n:1340000
KS ci ratio: 2.929749e-01	ci left: 1.140387e-04	ci right 1.538465e-04	k: 178	n:1340000
RGS14   1340000 perm   910 sec   (1473 perm/sec)   p_kst 1.328358e-04   p_cons 3.949022e-01   p_joint 3.365672e-04

Joint ci ratio: 1.835397e-01	ci left: 3.067805e-04	ci right 3.694698e-04	k: 455	n:1350000
Cons ci ratio: 4.176535e-03	ci left: 3.940449e-01	ci right 3.956948e-01	k: 533074	n:1350000
KS ci ratio: 2.929750e-01	ci left: 1.131939e-04	ci right 1.527069e-04	k: 178	n:1350000
RGS14   1350000 perm   922 sec   (1465 perm/sec)   p_kst 1.318519e-04   p_cons 3.948696e-01   p_joint 3.370370e-04

Joint ci ratio: 1.827400e-01	ci left: 3.073311e-04	ci right 3.698290e-04	k: 459	n:1360000
Cons ci ratio: 4.161221e-03	ci left: 3.940401e-01	ci right 3.956839e-01	k: 537012	n:1360000
KS ci ratio: 2.929752e-01	ci left: 1.123616e-04	ci right 1.515841e-04	k: 178	n:1360000
RGS14   1360000 perm   933 sec   (1457 perm/sec)   p_kst 1.308824e-04   p_cons 3.948618e-01   p_joint 3.375000e-04

Joint ci ratio: 1.813650e-01	ci left: 3.099645e-04	ci right 3.724715e-04	k: 466	n:1370000
Cons ci ratio: 4.146118e-03	ci left: 3.940302e-01	ci right 3.956680e-01	k: 540943	n:1370000
KS ci ratio: 2.913520e-01	ci left: 1.128944e-04	ci right 1.520441e-04	k: 180	n:1370000
RGS14   1370000 perm   945 sec   (1450 perm/sec)   p_kst 1.313869e-04   p_cons 3.948489e-01   p_joint 3.401460e-04

Joint ci ratio: 1.512931e-01	ci left: 4.494437e-04	ci right 5.236934e-04	k: 670	n:1380000
Cons ci ratio: 4.130877e-03	ci left: 3.940553e-01	ci right 3.956872e-01	k: 544922	n:1380000
KS ci ratio: 2.881847e-01	ci left: 1.147642e-04	ci right 1.540510e-04	k: 184	n:1380000
RGS14   1380000 perm   957 sec   (1442 perm/sec)   p_kst 1.333333e-04   p_cons 3.948710e-01   p_joint 4.855072e-04

Joint ci ratio: 1.502883e-01	ci left: 4.524408e-04	ci right 5.266447e-04	k: 679	n:1390000
Cons ci ratio: 4.116324e-03	ci left: 3.940196e-01	ci right 3.956456e-01	k: 548817	n:1390000
KS ci ratio: 2.858759e-01	ci left: 1.159415e-04	ci right 1.552559e-04	k: 187	n:1390000
RGS14   1390000 perm   969 sec   (1435 perm/sec)   p_kst 1.345324e-04   p_cons 3.948324e-01   p_joint 4.884892e-04

Joint ci ratio: 1.496296e-01	ci left: 4.533340e-04	ci right 5.273293e-04	k: 685	n:1400000
Cons ci ratio: 4.101948e-03	ci left: 3.939816e-01	ci right 3.956017e-01	k: 552708	n:1400000
KS ci ratio: 2.843673e-01	ci left: 1.164398e-04	ci right 1.556774e-04	k: 189	n:1400000
RGS14   1400000 perm   982 sec   (1426 perm/sec)   p_kst 1.350000e-04   p_cons 3.947914e-01   p_joint 4.892857e-04

Joint ci ratio: 1.488718e-01	ci left: 4.548981e-04	ci right 5.287392e-04	k: 692	n:1410000
Cons ci ratio: 4.087400e-03	ci left: 3.939817e-01	ci right 3.955960e-01	k: 556652	n:1410000
KS ci ratio: 2.836219e-01	ci left: 1.162727e-04	ci right 1.553329e-04	k: 190	n:1410000
RGS14   1410000 perm   994 sec   (1418 perm/sec)   p_kst 1.347518e-04   p_cons 3.947887e-01   p_joint 4.907801e-04

Joint ci ratio: 1.484441e-01	ci left: 4.544067e-04	ci right 5.279373e-04	k: 696	n:1420000
Cons ci ratio: 4.072591e-03	ci left: 3.940304e-01	ci right 3.956391e-01	k: 560665	n:1420000
KS ci ratio: 2.828824e-01	ci left: 1.161081e-04	ci right 1.549931e-04	k: 191	n:1420000
RGS14   1420000 perm   1006 sec   (1411 perm/sec)   p_kst 1.345070e-04   p_cons 3.948345e-01   p_joint 4.901408e-04

Joint ci ratio: 1.477041e-01	ci left: 4.559428e-04	ci right 5.293217e-04	k: 703	n:1430000
Cons ci ratio: 4.058596e-03	ci left: 3.940015e-01	ci right 3.956045e-01	k: 564568	n:1430000
KS ci ratio: 2.821486e-01	ci left: 1.159459e-04	ci right 1.546580e-04	k: 192	n:1430000
RGS14   1430000 perm   1019 sec   (1404 perm/sec)   p_kst 1.342657e-04   p_cons 3.948028e-01   p_joint 4.916084e-04

Joint ci ratio: 1.470787e-01	ci left: 4.567895e-04	ci right 5.299660e-04	k: 709	n:1440000
Cons ci ratio: 4.044673e-03	ci left: 3.939814e-01	ci right 3.955788e-01	k: 568483	n:1440000
KS ci ratio: 2.799808e-01	ci left: 1.170772e-04	ci right 1.558137e-04	k: 195	n:1440000
RGS14   1440000 perm   1031 sec   (1397 perm/sec)   p_kst 1.354167e-04   p_cons 3.947799e-01   p_joint 4.923611e-04

Joint ci ratio: 1.466661e-01	ci left: 4.562965e-04	ci right 5.291710e-04	k: 713	n:1450000
Cons ci ratio: 4.030660e-03	ci left: 3.939891e-01	ci right 3.955810e-01	k: 572438	n:1450000
KS ci ratio: 2.785632e-01	ci left: 1.175525e-04	ci right 1.562148e-04	k: 197	n:1450000
RGS14   1450000 perm   1043 sec   (1390 perm/sec)   p_kst 1.358621e-04   p_cons 3.947848e-01   p_joint 4.917241e-04

Joint ci ratio: 1.459523e-01	ci left: 4.577902e-04	ci right 5.305165e-04	k: 720	n:1460000
Cons ci ratio: 4.017189e-03	ci left: 3.939495e-01	ci right 3.955359e-01	k: 576324	n:1460000
KS ci ratio: 2.751108e-01	ci left: 1.199343e-04	ci right 1.588066e-04	k: 202	n:1460000
RGS14   1460000 perm   1056 sec   (1383 perm/sec)   p_kst 1.383562e-04   p_cons 3.947425e-01   p_joint 4.931507e-04

Joint ci ratio: 1.457505e-01	ci left: 4.559869e-04	ci right 5.283177e-04	k: 722	n:1470000
Cons ci ratio: 4.003664e-03	ci left: 3.939328e-01	ci right 3.955138e-01	k: 580243	n:1470000
KS ci ratio: 2.751110e-01	ci left: 1.191185e-04	ci right 1.577263e-04	k: 202	n:1470000
RGS14   1470000 perm   1068 sec   (1376 perm/sec)   p_kst 1.374150e-04   p_cons 3.947231e-01   p_joint 4.911565e-04

Joint ci ratio: 1.454491e-01	ci left: 4.548590e-04	ci right 5.268488e-04	k: 725	n:1480000
Cons ci ratio: 3.989924e-03	ci left: 3.939583e-01	ci right 3.955340e-01	k: 584224	n:1480000
KS ci ratio: 2.744359e-01	ci left: 1.189427e-04	ci right 1.573826e-04	k: 203	n:1480000
RGS14   1480000 perm   1081 sec   (1369 perm/sec)   p_kst 1.371622e-04   p_cons 3.947459e-01   p_joint 4.898649e-04

Joint ci ratio: 1.444574e-01	ci left: 4.582743e-04	ci right 5.302675e-04	k: 735	n:1490000
Cons ci ratio: 3.976459e-03	ci left: 3.939674e-01	ci right 3.955377e-01	k: 588181	n:1490000
KS ci ratio: 2.724398e-01	ci left: 1.200199e-04	ci right 1.584775e-04	k: 206	n:1490000
RGS14   1490000 perm   1094 sec   (1362 perm/sec)   p_kst 1.382550e-04   p_cons 3.947523e-01   p_joint 4.932886e-04

Joint ci ratio: 1.441640e-01	ci left: 4.571470e-04	ci right 5.288046e-04	k: 738	n:1500000
Cons ci ratio: 3.963252e-03	ci left: 3.939616e-01	ci right 3.955268e-01	k: 592116	n:1500000
KS ci ratio: 2.724399e-01	ci left: 1.192197e-04	ci right 1.574210e-04	k: 206	n:1500000
RGS14   1500000 perm   1106 sec   (1356 perm/sec)   p_kst 1.373333e-04   p_cons 3.947440e-01   p_joint 4.920000e-04

Joint ci ratio: 1.438723e-01	ci left: 4.560346e-04	ci right 5.273609e-04	k: 741	n:1510000
Cons ci ratio: 3.950262e-03	ci left: 3.939454e-01	ci right 3.955053e-01	k: 596035	n:1510000
KS ci ratio: 2.717843e-01	ci left: 1.190473e-04	ci right 1.570858e-04	k: 207	n:1510000
RGS14   1510000 perm   1119 sec   (1350 perm/sec)   p_kst 1.370861e-04   p_cons 3.947252e-01   p_joint 4.907285e-04

Joint ci ratio: 1.435824e-01	ci left: 4.549371e-04	ci right 5.259360e-04	k: 744	n:1520000
Cons ci ratio: 3.937281e-03	ci left: 3.939439e-01	ci right 3.954986e-01	k: 599976	n:1520000
KS ci ratio: 2.711333e-01	ci left: 1.188772e-04	ci right 1.567549e-04	k: 208	n:1520000
RGS14   1520000 perm   1132 sec   (1343 perm/sec)   p_kst 1.368421e-04   p_cons 3.947211e-01   p_joint 4.894737e-04

Joint ci ratio: 1.431986e-01	ci left: 4.544842e-04	ci right 5.252067e-04	k: 748	n:1530000
Cons ci ratio: 3.924206e-03	ci left: 3.939691e-01	ci right 3.955188e-01	k: 603958	n:1530000
KS ci ratio: 2.711335e-01	ci left: 1.181002e-04	ci right 1.557304e-04	k: 208	n:1530000
RGS14   1530000 perm   1145 sec   (1337 perm/sec)   p_kst 1.359477e-04   p_cons 3.947438e-01   p_joint 4.888889e-04

Joint ci ratio: 1.428178e-01	ci left: 4.540375e-04	ci right 5.244865e-04	k: 752	n:1540000
Cons ci ratio: 3.911383e-03	ci left: 3.939792e-01	ci right 3.955238e-01	k: 607917	n:1540000
KS ci ratio: 2.704872e-01	ci left: 1.179386e-04	ci right 1.554125e-04	k: 209	n:1540000
RGS14   1540000 perm   1158 sec   (1330 perm/sec)   p_kst 1.357143e-04   p_cons 3.947513e-01   p_joint 4.883117e-04

Joint ci ratio: 1.427232e-01	ci left: 4.517303e-04	ci right 5.217710e-04	k: 753	n:1550000
Cons ci ratio: 3.898690e-03	ci left: 3.939884e-01	ci right 3.955281e-01	k: 611875	n:1550000
KS ci ratio: 2.698455e-01	ci left: 1.177791e-04	ci right 1.550986e-04	k: 210	n:1550000
RGS14   1550000 perm   1171 sec   (1324 perm/sec)   p_kst 1.354839e-04   p_cons 3.947581e-01   p_joint 4.858065e-04

Joint ci ratio: 1.423462e-01	ci left: 4.513073e-04	ci right 5.210818e-04	k: 757	n:1560000
Cons ci ratio: 3.886146e-03	ci left: 3.939944e-01	ci right 3.955291e-01	k: 615828	n:1560000
KS ci ratio: 2.692083e-01	ci left: 1.176219e-04	ci right 1.547886e-04	k: 211	n:1560000
RGS14   1560000 perm   1184 sec   (1318 perm/sec)   p_kst 1.352564e-04   p_cons 3.947615e-01   p_joint 4.852564e-04

Joint ci ratio: 1.419721e-01	ci left: 4.508898e-04	ci right 5.204011e-04	k: 761	n:1570000
Cons ci ratio: 3.873799e-03	ci left: 3.939907e-01	ci right 3.955205e-01	k: 619766	n:1570000
KS ci ratio: 2.679473e-01	ci left: 1.180608e-04	ci right 1.551621e-04	k: 213	n:1570000
RGS14   1570000 perm   1197 sec   (1311 perm/sec)   p_kst 1.356688e-04   p_cons 3.947554e-01   p_joint 4.847134e-04

Joint ci ratio: 1.412325e-01	ci left: 4.529200e-04	ci right 5.223500e-04	k: 769	n:1580000
Cons ci ratio: 3.861902e-03	ci left: 3.939460e-01	ci right 3.954709e-01	k: 623639	n:1580000
KS ci ratio: 2.673235e-01	ci left: 1.179040e-04	ci right 1.548554e-04	k: 214	n:1580000
RGS14   1580000 perm   1210 sec   (1305 perm/sec)   p_kst 1.354430e-04   p_cons 3.947082e-01   p_joint 4.867089e-04

Joint ci ratio: 1.408671e-01	ci left: 4.524984e-04	ci right 5.216692e-04	k: 773	n:1590000
Cons ci ratio: 3.849942e-03	ci left: 3.939232e-01	ci right 3.954433e-01	k: 627546	n:1590000
KS ci ratio: 2.654776e-01	ci left: 1.189233e-04	ci right 1.558939e-04	k: 217	n:1590000
RGS14   1590000 perm   1224 sec   (1299 perm/sec)   p_kst 1.364780e-04   p_cons 3.946830e-01   p_joint 4.861635e-04

Joint ci ratio: 1.404143e-01	ci left: 4.526854e-04	ci right 5.216437e-04	k: 778	n:1600000
Cons ci ratio: 3.838147e-03	ci left: 3.938938e-01	ci right 3.954091e-01	k: 631442	n:1600000
KS ci ratio: 2.648708e-01	ci left: 1.187635e-04	ci right 1.555860e-04	k: 218	n:1600000
RGS14   1600000 perm   1237 sec   (1294 perm/sec)   p_kst 1.362500e-04   p_cons 3.946513e-01   p_joint 4.862500e-04

Joint ci ratio: 1.398766e-01	ci left: 4.534697e-04	ci right 5.222609e-04	k: 784	n:1610000
Cons ci ratio: 3.825993e-03	ci left: 3.939231e-01	ci right 3.954338e-01	k: 635432	n:1610000
KS ci ratio: 2.630750e-01	ci left: 1.197659e-04	ci right 1.566060e-04	k: 221	n:1610000
RGS14   1610000 perm   1250 sec   (1288 perm/sec)   p_kst 1.372671e-04   p_cons 3.946783e-01   p_joint 4.869565e-04

Joint ci ratio: 1.394333e-01	ci left: 4.536491e-04	ci right 5.222313e-04	k: 789	n:1620000
Cons ci ratio: 3.814224e-03	ci left: 3.939182e-01	ci right 3.954242e-01	k: 639367	n:1620000
KS ci ratio: 2.618978e-01	ci left: 1.201799e-04	ci right 1.569549e-04	k: 223	n:1620000
RGS14   1620000 perm   1264 sec   (1282 perm/sec)   p_kst 1.376543e-04   p_cons 3.946710e-01   p_joint 4.870370e-04

Joint ci ratio: 1.392572e-01	ci left: 4.520502e-04	ci right 5.202972e-04	k: 791	n:1630000
Cons ci ratio: 3.802075e-03	ci left: 3.939747e-01	ci right 3.954760e-01	k: 643402	n:1630000
KS ci ratio: 2.618979e-01	ci left: 1.194426e-04	ci right 1.559920e-04	k: 223	n:1630000
RGS14   1630000 perm   1277 sec   (1276 perm/sec)   p_kst 1.368098e-04   p_cons 3.947252e-01   p_joint 4.852761e-04

Joint ci ratio: 1.387327e-01	ci left: 4.528251e-04	ci right 5.209103e-04	k: 797	n:1640000
Cons ci ratio: 3.790510e-03	ci left: 3.939713e-01	ci right 3.954681e-01	k: 647340	n:1640000
KS ci ratio: 2.607365e-01	ci left: 1.198540e-04	ci right 1.563401e-04	k: 225	n:1640000
RGS14   1640000 perm   1291 sec   (1271 perm/sec)   p_kst 1.371951e-04   p_cons 3.947195e-01   p_joint 4.859756e-04

Joint ci ratio: 1.385593e-01	ci left: 4.512507e-04	ci right 5.190074e-04	k: 799	n:1650000
Cons ci ratio: 3.779022e-03	ci left: 3.939716e-01	ci right 3.954639e-01	k: 651284	n:1650000
KS ci ratio: 2.607366e-01	ci left: 1.191276e-04	ci right 1.553925e-04	k: 225	n:1650000
RGS14   1650000 perm   1305 sec   (1265 perm/sec)   p_kst 1.363636e-04   p_cons 3.947176e-01   p_joint 4.842424e-04

Joint ci ratio: 1.378715e-01	ci left: 4.531850e-04	ci right 5.208667e-04	k: 807	n:1660000
Cons ci ratio: 3.767727e-03	ci left: 3.939605e-01	ci right 3.954483e-01	k: 655209	n:1660000
KS ci ratio: 2.601617e-01	ci left: 1.189730e-04	ci right 1.550981e-04	k: 226	n:1660000
RGS14   1660000 perm   1319 sec   (1258 perm/sec)   p_kst 1.361446e-04   p_cons 3.947042e-01   p_joint 4.861446e-04

Joint ci ratio: 1.372781e-01	ci left: 4.545187e-04	ci right 5.220835e-04	k: 814	n:1670000
Cons ci ratio: 3.756416e-03	ci left: 3.939645e-01	ci right 3.954478e-01	k: 659159	n:1670000
KS ci ratio: 2.584593e-01	ci left: 1.199403e-04	ci right 1.560823e-04	k: 229	n:1670000
RGS14   1670000 perm   1334 sec   (1252 perm/sec)   p_kst 1.371257e-04   p_cons 3.947060e-01   p_joint 4.874251e-04

Joint ci ratio: 1.366922e-01	ci left: 4.558371e-04	ci right 5.232852e-04	k: 821	n:1680000
Cons ci ratio: 3.745248e-03	ci left: 3.939631e-01	ci right 3.954420e-01	k: 663100	n:1680000
KS ci ratio: 2.567899e-01	ci left: 1.208968e-04	ci right 1.570540e-04	k: 232	n:1680000
RGS14   1680000 perm   1348 sec   (1247 perm/sec)   p_kst 1.380952e-04   p_cons 3.947024e-01   p_joint 4.886905e-04

Joint ci ratio: 1.364435e-01	ci left: 4.548544e-04	ci right 5.220246e-04	k: 824	n:1690000
Cons ci ratio: 3.734262e-03	ci left: 3.939511e-01	ci right 3.954256e-01	k: 667023	n:1690000
KS ci ratio: 2.562406e-01	ci left: 1.207351e-04	ci right 1.567543e-04	k: 233	n:1690000
RGS14   1690000 perm   1362 sec   (1241 perm/sec)   p_kst 1.378698e-04   p_cons 3.946882e-01   p_joint 4.875740e-04

Joint ci ratio: 1.359500e-01	ci left: 4.555879e-04	ci right 5.226034e-04	k: 830	n:1700000
Cons ci ratio: 3.723115e-03	ci left: 3.939722e-01	ci right 3.954423e-01	k: 671002	n:1700000
KS ci ratio: 2.551525e-01	ci left: 1.211259e-04	ci right 1.570839e-04	k: 235	n:1700000
RGS14   1700000 perm   1377 sec   (1235 perm/sec)   p_kst 1.382353e-04   p_cons 3.947071e-01   p_joint 4.882353e-04

Joint ci ratio: 1.355429e-01	ci left: 4.557483e-04	ci right 5.225705e-04	k: 835	n:1710000
Cons ci ratio: 3.712100e-03	ci left: 3.939889e-01	ci right 3.954547e-01	k: 674974	n:1710000
KS ci ratio: 2.551526e-01	ci left: 1.204176e-04	ci right 1.561653e-04	k: 235	n:1710000
RGS14   1710000 perm   1391 sec   (1229 perm/sec)   p_kst 1.374269e-04   p_cons 3.947216e-01   p_joint 4.883041e-04

Joint ci ratio: 1.353004e-01	ci left: 4.547837e-04	ci right 5.213356e-04	k: 838	n:1720000
Cons ci ratio: 3.701051e-03	ci left: 3.940223e-01	ci right 3.954839e-01	k: 678975	n:1720000
KS ci ratio: 2.546137e-01	ci left: 1.202617e-04	ci right 1.558759e-04	k: 236	n:1720000
RGS14   1720000 perm   1406 sec   (1224 perm/sec)   p_kst 1.372093e-04   p_cons 3.947529e-01   p_joint 4.872093e-04

Joint ci ratio: 1.349790e-01	ci left: 4.543889e-04	ci right 5.207123e-04	k: 842	n:1730000
Cons ci ratio: 3.690167e-03	ci left: 3.940467e-01	ci right 3.955040e-01	k: 682961	n:1730000
KS ci ratio: 2.530173e-01	ci left: 1.211904e-04	ci right 1.568190e-04	k: 239	n:1730000
RGS14   1730000 perm   1421 sec   (1218 perm/sec)   p_kst 1.381503e-04   p_cons 3.947751e-01   p_joint 4.867052e-04

Joint ci ratio: 1.343430e-01	ci left: 4.562203e-04	ci right 5.224722e-04	k: 850	n:1740000
Cons ci ratio: 3.679405e-03	ci left: 3.940673e-01	ci right 3.955204e-01	k: 686941	n:1740000
KS ci ratio: 2.504219e-01	ci left: 1.231862e-04	ci right 1.589722e-04	k: 244	n:1740000
RGS14   1740000 perm   1436 sec   (1212 perm/sec)   p_kst 1.402299e-04   p_cons 3.947937e-01   p_joint 4.885057e-04

Joint ci ratio: 1.339500e-01	ci left: 4.563746e-04	ci right 5.224396e-04	k: 855	n:1750000
Cons ci ratio: 3.669132e-03	ci left: 3.940363e-01	ci right 3.954852e-01	k: 690831	n:1750000
KS ci ratio: 2.489025e-01	ci left: 1.240893e-04	ci right 1.598851e-04	k: 247	n:1750000
RGS14   1750000 perm   1451 sec   (1206 perm/sec)   p_kst 1.411429e-04   p_cons 3.947606e-01   p_joint 4.885714e-04

Joint ci ratio: 1.336382e-01	ci left: 4.559782e-04	ci right 5.218200e-04	k: 859	n:1760000
Cons ci ratio: 3.658543e-03	ci left: 3.940579e-01	ci right 3.955027e-01	k: 694813	n:1760000
KS ci ratio: 2.479049e-01	ci left: 1.244499e-04	ci right 1.601836e-04	k: 249	n:1760000
RGS14   1760000 perm   1465 sec   (1201 perm/sec)   p_kst 1.414773e-04   p_cons 3.947801e-01   p_joint 4.880682e-04

Joint ci ratio: 1.332514e-01	ci left: 4.561326e-04	ci right 5.217909e-04	k: 864	n:1770000
Cons ci ratio: 3.648396e-03	ci left: 3.940335e-01	ci right 3.954742e-01	k: 698714	n:1770000
KS ci ratio: 2.474106e-01	ci left: 1.242767e-04	ci right 1.598786e-04	k: 250	n:1770000
RGS14   1770000 perm   1481 sec   (1196 perm/sec)   p_kst 1.412429e-04   p_cons 3.947537e-01   p_joint 4.881356e-04

Joint ci ratio: 1.328679e-01	ci left: 4.562855e-04	ci right 5.217620e-04	k: 869	n:1780000
Cons ci ratio: 3.638255e-03	ci left: 3.940195e-01	ci right 3.954562e-01	k: 702633	n:1780000
KS ci ratio: 2.464307e-01	ci left: 1.246326e-04	ci right 1.601734e-04	k: 252	n:1780000
RGS14   1780000 perm   1496 sec   (1190 perm/sec)   p_kst 1.415730e-04   p_cons 3.947376e-01   p_joint 4.882022e-04

Joint ci ratio: 1.326395e-01	ci left: 4.553568e-04	ci right 5.205787e-04	k: 872	n:1790000
Cons ci ratio: 3.627634e-03	ci left: 3.940799e-01	ci right 3.955126e-01	k: 706685	n:1790000
KS ci ratio: 2.459452e-01	ci left: 1.244605e-04	ci right 1.598716e-04	k: 253	n:1790000
RGS14   1790000 perm   1511 sec   (1185 perm/sec)   p_kst 1.413408e-04   p_cons 3.947961e-01   p_joint 4.871508e-04

Joint ci ratio: 1.325637e-01	ci left: 4.533641e-04	ci right 5.182606e-04	k: 873	n:1800000
Cons ci ratio: 3.617518e-03	ci left: 3.940853e-01	ci right 3.955140e-01	k: 710639	n:1800000
KS ci ratio: 2.459453e-01	ci left: 1.237691e-04	ci right 1.589834e-04	k: 253	n:1800000
RGS14   1800000 perm   1526 sec   (1179 perm/sec)   p_kst 1.405556e-04   p_cons 3.947994e-01   p_joint 4.850000e-04

Joint ci ratio: 1.322615e-01	ci left: 4.529960e-04	ci right 5.176804e-04	k: 877	n:1810000
Cons ci ratio: 3.607303e-03	ci left: 3.941148e-01	ci right 3.955396e-01	k: 714637	n:1810000
KS ci ratio: 2.449826e-01	ci left: 1.241223e-04	ci right 1.592779e-04	k: 255	n:1810000
RGS14   1810000 perm   1542 sec   (1174 perm/sec)   p_kst 1.408840e-04   p_cons 3.948271e-01   p_joint 4.845304e-04

Joint ci ratio: 1.318865e-01	ci left: 4.531635e-04	ci right 5.176740e-04	k: 882	n:1820000
Cons ci ratio: 3.597587e-03	ci left: 3.940892e-01	ci right 3.955100e-01	k: 718535	n:1820000
KS ci ratio: 2.435595e-01	ci left: 1.249878e-04	ci right 1.601517e-04	k: 258	n:1820000
RGS14   1820000 perm   1558 sec   (1168 perm/sec)   p_kst 1.417582e-04   p_cons 3.947995e-01   p_joint 4.846154e-04

Joint ci ratio: 1.312929e-01	ci left: 4.549149e-04	ci right 5.193605e-04	k: 890	n:1830000
Cons ci ratio: 3.587937e-03	ci left: 3.940655e-01	ci right 3.954824e-01	k: 722436	n:1830000
KS ci ratio: 2.430907e-01	ci left: 1.248179e-04	ci right 1.598563e-04	k: 259	n:1830000
RGS14   1830000 perm   1573 sec   (1163 perm/sec)   p_kst 1.415301e-04   p_cons 3.947738e-01   p_joint 4.863388e-04

Joint ci ratio: 1.309261e-01	ci left: 4.550708e-04	ci right 5.193444e-04	k: 895	n:1840000
Cons ci ratio: 3.578079e-03	ci left: 3.940800e-01	ci right 3.954931e-01	k: 726407	n:1840000
KS ci ratio: 2.430908e-01	ci left: 1.241395e-04	ci right 1.589875e-04	k: 259	n:1840000
RGS14   1840000 perm   1589 sec   (1158 perm/sec)   p_kst 1.407609e-04   p_cons 3.947864e-01   p_joint 4.864130e-04

Joint ci ratio: 1.307075e-01	ci left: 4.541795e-04	ci right 5.182118e-04	k: 898	n:1850000
Cons ci ratio: 3.568383e-03	ci left: 3.940836e-01	ci right 3.954929e-01	k: 730358	n:1850000
KS ci ratio: 2.430909e-01	ci left: 1.234685e-04	ci right 1.581281e-04	k: 259	n:1850000
RGS14   1850000 perm   1605 sec   (1153 perm/sec)   p_kst 1.400000e-04   p_cons 3.947881e-01   p_joint 4.854054e-04

Joint ci ratio: 1.301297e-01	ci left: 4.558985e-04	ci right 5.198670e-04	k: 906	n:1860000
Cons ci ratio: 3.558337e-03	ci left: 3.941447e-01	ci right 3.955502e-01	k: 734416	n:1860000
KS ci ratio: 2.426248e-01	ci left: 1.233096e-04	ci right 1.578483e-04	k: 260	n:1860000
RGS14   1860000 perm   1621 sec   (1148 perm/sec)   p_kst 1.397849e-04   p_cons 3.948473e-01   p_joint 4.870968e-04

Joint ci ratio: 1.294887e-01	ci left: 4.581171e-04	ci right 5.220560e-04	k: 915	n:1870000
Cons ci ratio: 3.548561e-03	ci left: 3.941800e-01	ci right 3.955818e-01	k: 738427	n:1870000
KS ci ratio: 2.421614e-01	ci left: 1.231525e-04	ci right 1.575713e-04	k: 261	n:1870000
RGS14   1870000 perm   1636 sec   (1143 perm/sec)   p_kst 1.395722e-04   p_cons 3.948807e-01   p_joint 4.893048e-04

Joint ci ratio: 1.293477e-01	ci left: 4.567097e-04	ci right 5.203774e-04	k: 917	n:1880000
Cons ci ratio: 3.539173e-03	ci left: 3.941735e-01	ci right 3.955715e-01	k: 742360	n:1880000
KS ci ratio: 2.417006e-01	ci left: 1.229971e-04	ci right 1.572973e-04	k: 262	n:1880000
RGS14   1880000 perm   1653 sec   (1138 perm/sec)   p_kst 1.393617e-04   p_cons 3.948723e-01   p_joint 4.877660e-04

Joint ci ratio: 1.290668e-01	ci left: 4.563412e-04	ci right 5.198088e-04	k: 921	n:1890000
Cons ci ratio: 3.529762e-03	ci left: 3.941802e-01	ci right 3.955746e-01	k: 746318	n:1890000
KS ci ratio: 2.403336e-01	ci left: 1.238378e-04	ci right 1.581480e-04	k: 265	n:1890000
RGS14   1890000 perm   1669 sec   (1132 perm/sec)   p_kst 1.402116e-04   p_cons 3.948772e-01   p_joint 4.873016e-04

Joint ci ratio: 1.284413e-01	ci left: 4.585237e-04	ci right 5.219623e-04	k: 930	n:1900000
Cons ci ratio: 3.520320e-03	ci left: 3.942011e-01	ci right 3.955918e-01	k: 750303	n:1900000
KS ci ratio: 2.394352e-01	ci left: 1.241754e-04	ci right 1.584314e-04	k: 267	n:1900000
RGS14   1900000 perm   1685 sec   (1127 perm/sec)   p_kst 1.405263e-04   p_cons 3.948963e-01   p_joint 4.894737e-04

Joint ci ratio: 1.278929e-01	ci left: 4.601773e-04	ci right 5.235522e-04	k: 938	n:1910000
Cons ci ratio: 3.511497e-03	ci left: 3.941480e-01	ci right 3.955350e-01	k: 754147	n:1910000
KS ci ratio: 2.385467e-01	ci left: 1.245097e-04	ci right 1.587116e-04	k: 269	n:1910000
RGS14   1910000 perm   1702 sec   (1122 perm/sec)   p_kst 1.408377e-04   p_cons 3.948414e-01   p_joint 4.910995e-04

Joint ci ratio: 1.275537e-01	ci left: 4.603015e-04	ci right 5.235127e-04	k: 943	n:1920000
Cons ci ratio: 3.502326e-03	ci left: 3.941517e-01	ci right 3.955351e-01	k: 758099	n:1920000
KS ci ratio: 2.381062e-01	ci left: 1.243509e-04	ci right 1.584369e-04	k: 270	n:1920000
RGS14   1920000 perm   1720 sec   (1116 perm/sec)   p_kst 1.406250e-04   p_cons 3.948432e-01   p_joint 4.911458e-04

Joint ci ratio: 1.272173e-01	ci left: 4.604247e-04	ci right 5.234733e-04	k: 948	n:1930000
Cons ci ratio: 3.493250e-03	ci left: 3.941522e-01	ci right 3.955320e-01	k: 762045	n:1930000
KS ci ratio: 2.372324e-01	ci left: 1.246812e-04	ci right 1.587138e-04	k: 272	n:1930000
RGS14   1930000 perm   1737 sec   (1111 perm/sec)   p_kst 1.409326e-04   p_cons 3.948420e-01   p_joint 4.911917e-04

Joint ci ratio: 1.269500e-01	ci left: 4.600476e-04	ci right 5.229024e-04	k: 952	n:1940000
Cons ci ratio: 3.484275e-03	ci left: 3.941486e-01	ci right 3.955249e-01	k: 765983	n:1940000
KS ci ratio: 2.359394e-01	ci left: 1.254932e-04	ci right 1.595336e-04	k: 275	n:1940000
RGS14   1940000 perm   1754 sec   (1106 perm/sec)   p_kst 1.417526e-04   p_cons 3.948366e-01   p_joint 4.907216e-04

Joint ci ratio: 1.267507e-01	ci left: 4.591780e-04	ci right 5.218081e-04	k: 955	n:1950000
Cons ci ratio: 3.475252e-03	ci left: 3.941610e-01	ci right 3.955337e-01	k: 769952	n:1950000
KS ci ratio: 2.359395e-01	ci left: 1.248497e-04	ci right 1.587155e-04	k: 275	n:1950000
RGS14   1950000 perm   1771 sec   (1101 perm/sec)   p_kst 1.410256e-04   p_cons 3.948472e-01   p_joint 4.897436e-04

Joint ci ratio: 1.264864e-01	ci left: 4.588115e-04	ci right 5.212513e-04	k: 959	n:1960000
Cons ci ratio: 3.466303e-03	ci left: 3.941727e-01	ci right 3.955419e-01	k: 773920	n:1960000
KS ci ratio: 2.355133e-01	ci left: 1.246928e-04	ci right 1.584460e-04	k: 276	n:1960000
RGS14   1960000 perm   1787 sec   (1097 perm/sec)   p_kst 1.408163e-04   p_cons 3.948571e-01   p_joint 4.892857e-04

Joint ci ratio: 1.262238e-01	ci left: 4.584488e-04	ci right 5.206999e-04	k: 963	n:1970000
Cons ci ratio: 3.457537e-03	ci left: 3.941686e-01	ci right 3.955343e-01	k: 777857	n:1970000
KS ci ratio: 2.350893e-01	ci left: 1.245375e-04	ci right 1.581792e-04	k: 277	n:1970000
RGS14   1970000 perm   1804 sec   (1092 perm/sec)   p_kst 1.406091e-04   p_cons 3.948513e-01   p_joint 4.888325e-04

Joint ci ratio: 1.260279e-01	ci left: 4.576007e-04	ci right 5.196331e-04	k: 966	n:1980000
Cons ci ratio: 3.449066e-03	ci left: 3.941327e-01	ci right 3.954949e-01	k: 781731	n:1980000
KS ci ratio: 2.350894e-01	ci left: 1.239085e-04	ci right 1.573803e-04	k: 277	n:1980000
RGS14   1980000 perm   1821 sec   (1088 perm/sec)   p_kst 1.398990e-04   p_cons 3.948136e-01   p_joint 4.878788e-04

Joint ci ratio: 1.255097e-01	ci left: 4.591948e-04	ci right 5.211683e-04	k: 974	n:1990000
Cons ci ratio: 3.440513e-03	ci left: 3.941172e-01	ci right 3.954760e-01	k: 785645	n:1990000
KS ci ratio: 2.350895e-01	ci left: 1.232858e-04	ci right 1.565895e-04	k: 277	n:1990000
RGS14   1990000 perm   1838 sec   (1083 perm/sec)   p_kst 1.391960e-04   p_cons 3.947965e-01   p_joint 4.894472e-04

Joint ci ratio: 1.252530e-01	ci left: 4.588361e-04	ci right 5.206252e-04	k: 978	n:2000000
Cons ci ratio: 3.431560e-03	ci left: 3.941664e-01	ci right 3.955219e-01	k: 789688	n:2000000
KS ci ratio: 2.350896e-01	ci left: 1.226694e-04	ci right 1.558065e-04	k: 277	n:2000000
RGS14   2000000 perm   1854 sec   (1079 perm/sec)   p_kst 1.385000e-04   p_cons 3.948440e-01   p_joint 4.890000e-04

Joint ci ratio: 1.247443e-01	ci left: 4.604090e-04	ci right 5.221395e-04	k: 986	n:2010000
Cons ci ratio: 3.423121e-03	ci left: 3.941530e-01	ci right 3.955050e-01	k: 793606	n:2010000
KS ci ratio: 2.346679e-01	ci left: 1.225273e-04	ci right 1.555581e-04	k: 278	n:2010000
RGS14   2010000 perm   1871 sec   (1074 perm/sec)   p_kst 1.383085e-04   p_cons 3.948289e-01   p_joint 4.905473e-04

Joint ci ratio: 1.244923e-01	ci left: 4.600482e-04	ci right 5.215965e-04	k: 990	n:2020000
Cons ci ratio: 3.414699e-03	ci left: 3.941461e-01	ci right 3.954948e-01	k: 797537	n:2020000
KS ci ratio: 2.346680e-01	ci left: 1.219208e-04	ci right 1.547880e-04	k: 278	n:2020000
RGS14   2020000 perm   1888 sec   (1070 perm/sec)   p_kst 1.376238e-04   p_cons 3.948203e-01   p_joint 4.900990e-04

Joint ci ratio: 1.243044e-01	ci left: 4.592138e-04	ci right 5.205509e-04	k: 993	n:2030000
Cons ci ratio: 3.406342e-03	ci left: 3.941388e-01	ci right 3.954841e-01	k: 801467	n:2030000
KS ci ratio: 2.342486e-01	ci left: 1.217839e-04	ci right 1.545470e-04	k: 279	n:2030000
RGS14   2030000 perm   1905 sec   (1066 perm/sec)   p_kst 1.374384e-04   p_cons 3.948113e-01   p_joint 4.891626e-04

Joint ci ratio: 1.239309e-01	ci left: 4.598127e-04	ci right 5.210316e-04	k: 999	n:2040000
Cons ci ratio: 3.397819e-03	ci left: 3.941634e-01	ci right 3.955055e-01	k: 805462	n:2040000
KS ci ratio: 2.334164e-01	ci left: 1.221098e-04	ci right 1.548271e-04	k: 281	n:2040000
RGS14   2040000 perm   1922 sec   (1061 perm/sec)   p_kst 1.377451e-04   p_cons 3.948343e-01   p_joint 4.897059e-04

Joint ci ratio: 1.234993e-01	ci left: 4.608786e-04	ci right 5.220102e-04	k: 1006	n:2050000
Cons ci ratio: 3.389568e-03	ci left: 3.941586e-01	ci right 3.954973e-01	k: 809397	n:2050000
KS ci ratio: 2.325930e-01	ci left: 1.224328e-04	ci right 1.551043e-04	k: 283	n:2050000
RGS14   2050000 perm   1939 sec   (1057 perm/sec)   p_kst 1.380488e-04   p_cons 3.948278e-01   p_joint 4.907317e-04

Joint ci ratio: 1.231938e-01	ci left: 4.609937e-04	ci right 5.219782e-04	k: 1011	n:2060000
Cons ci ratio: 3.381201e-03	ci left: 3.941785e-01	ci right 3.955140e-01	k: 813383	n:2060000
KS ci ratio: 2.321846e-01	ci left: 1.222957e-04	ci right 1.548651e-04	k: 284	n:2060000
RGS14   2060000 perm   1957 sec   (1053 perm/sec)   p_kst 1.378641e-04   p_cons 3.948461e-01   p_joint 4.907767e-04

Joint ci ratio: 1.228302e-01	ci left: 4.615760e-04	ci right 5.224443e-04	k: 1017	n:2070000
Cons ci ratio: 3.373193e-03	ci left: 3.941562e-01	ci right 3.954885e-01	k: 817282	n:2070000
KS ci ratio: 2.309721e-01	ci left: 1.230701e-04	ci right 1.556501e-04	k: 287	n:2070000
RGS14   2070000 perm   1974 sec   (1049 perm/sec)   p_kst 1.386473e-04   p_cons 3.948222e-01   p_joint 4.913043e-04

Joint ci ratio: 1.225297e-01	ci left: 4.616870e-04	ci right 5.224101e-04	k: 1022	n:2080000
Cons ci ratio: 3.365014e-03	ci left: 3.941664e-01	ci right 3.954954e-01	k: 821248	n:2080000
KS ci ratio: 2.301742e-01	ci left: 1.233844e-04	ci right 1.559188e-04	k: 289	n:2080000
RGS14   2080000 perm   1992 sec   (1044 perm/sec)   p_kst 1.389423e-04   p_cons 3.948308e-01   p_joint 4.913462e-04

Joint ci ratio: 1.223505e-01	ci left: 4.608694e-04	ci right 5.213899e-04	k: 1025	n:2090000
Cons ci ratio: 3.357144e-03	ci left: 3.941410e-01	ci right 3.954669e-01	k: 825140	n:2090000
KS ci ratio: 2.301743e-01	ci left: 1.227940e-04	ci right 1.551728e-04	k: 289	n:2090000
RGS14   2090000 perm   2009 sec   (1040 perm/sec)   p_kst 1.382775e-04   p_cons 3.948038e-01   p_joint 4.904306e-04

Joint ci ratio: 1.220534e-01	ci left: 4.609829e-04	ci right 5.213608e-04	k: 1030	n:2100000
Cons ci ratio: 3.349058e-03	ci left: 3.941545e-01	ci right 3.954772e-01	k: 829113	n:2100000
KS ci ratio: 2.301744e-01	ci left: 1.222093e-04	ci right 1.544338e-04	k: 289	n:2100000
RGS14   2100000 perm   2026 sec   (1036 perm/sec)   p_kst 1.376190e-04   p_cons 3.948157e-01   p_joint 4.904762e-04

Joint ci ratio: 1.218763e-01	ci left: 4.601766e-04	ci right 5.203551e-04	k: 1033	n:2110000
Cons ci ratio: 3.340841e-03	ci left: 3.941948e-01	ci right 3.955144e-01	k: 833143	n:2110000
KS ci ratio: 2.297786e-01	ci left: 1.220768e-04	ci right 1.542031e-04	k: 290	n:2110000
RGS14   2110000 perm   2044 sec   (1032 perm/sec)   p_kst 1.374408e-04   p_cons 3.948545e-01   p_joint 4.895735e-04

Joint ci ratio: 1.216999e-01	ci left: 4.593779e-04	ci right 5.193588e-04	k: 1036	n:2120000
Cons ci ratio: 3.332842e-03	ci left: 3.942122e-01	ci right 3.955287e-01	k: 837125	n:2120000
KS ci ratio: 2.297786e-01	ci left: 1.215009e-04	ci right 1.534758e-04	k: 290	n:2120000
RGS14   2120000 perm   2062 sec   (1028 perm/sec)   p_kst 1.367925e-04   p_cons 3.948703e-01   p_joint 4.886792e-04

Joint ci ratio: 1.216414e-01	ci left: 4.576764e-04	ci right 5.174042e-04	k: 1037	n:2130000
Cons ci ratio: 3.325035e-03	ci left: 3.942101e-01	ci right 3.955235e-01	k: 841066	n:2130000
KS ci ratio: 2.297787e-01	ci left: 1.209305e-04	ci right 1.527552e-04	k: 290	n:2130000
RGS14   2130000 perm   2080 sec   (1024 perm/sec)   p_kst 1.361502e-04   p_cons 3.948667e-01   p_joint 4.868545e-04

Joint ci ratio: 1.213495e-01	ci left: 4.578032e-04	ci right 5.173939e-04	k: 1042	n:2140000
Cons ci ratio: 3.317528e-03	ci left: 3.941726e-01	ci right 3.954829e-01	k: 844931	n:2140000
KS ci ratio: 2.293849e-01	ci left: 1.208058e-04	ci right 1.525355e-04	k: 291	n:2140000
RGS14   2140000 perm   2098 sec   (1020 perm/sec)   p_kst 1.359813e-04   p_cons 3.948276e-01   p_joint 4.869159e-04

Joint ci ratio: 1.211754e-01	ci left: 4.570269e-04	ci right 5.164251e-04	k: 1045	n:2150000
Cons ci ratio: 3.309940e-03	ci left: 3.941544e-01	ci right 3.954617e-01	k: 848837	n:2150000
KS ci ratio: 2.289932e-01	ci left: 1.206823e-04	ci right 1.523178e-04	k: 292	n:2150000
RGS14   2150000 perm   2116 sec   (1016 perm/sec)   p_kst 1.358140e-04   p_cons 3.948079e-01   p_joint 4.860465e-04

Joint ci ratio: 1.210021e-01	ci left: 4.562578e-04	ci right 5.154652e-04	k: 1048	n:2160000
Cons ci ratio: 3.302151e-03	ci left: 3.941730e-01	ci right 3.954772e-01	k: 852822	n:2160000
KS ci ratio: 2.289933e-01	ci left: 1.201236e-04	ci right 1.516127e-04	k: 292	n:2160000
RGS14   2160000 perm   2134 sec   (1012 perm/sec)   p_kst 1.351852e-04   p_cons 3.948250e-01   p_joint 4.851852e-04

Joint ci ratio: 1.207147e-01	ci left: 4.563897e-04	ci right 5.154635e-04	k: 1053	n:2170000
Cons ci ratio: 3.294395e-03	ci left: 3.941947e-01	ci right 3.954959e-01	k: 856814	n:2170000
KS ci ratio: 2.286035e-01	ci left: 1.200045e-04	ci right 1.514012e-04	k: 293	n:2170000
RGS14   2170000 perm   2152 sec   (1008 perm/sec)   p_kst 1.350230e-04   p_cons 3.948452e-01   p_joint 4.852535e-04

Joint ci ratio: 1.202591e-01	ci left: 4.578553e-04	ci right 5.168793e-04	k: 1061	n:2180000
Cons ci ratio: 3.286702e-03	ci left: 3.942148e-01	ci right 3.955130e-01	k: 860803	n:2180000
KS ci ratio: 2.278299e-01	ci left: 1.203190e-04	ci right 1.516765e-04	k: 295	n:2180000
RGS14   2180000 perm   2170 sec   (1005 perm/sec)   p_kst 1.353211e-04   p_cons 3.948638e-01   p_joint 4.866972e-04

Joint ci ratio: 1.200896e-01	ci left: 4.570933e-04	ci right 5.159301e-04	k: 1064	n:2190000
Cons ci ratio: 3.279020e-03	ci left: 3.942411e-01	ci right 3.955364e-01	k: 864806	n:2190000
KS ci ratio: 2.278299e-01	ci left: 1.197696e-04	ci right 1.509839e-04	k: 295	n:2190000
RGS14   2190000 perm   2188 sec   (1001 perm/sec)   p_kst 1.347032e-04   p_cons 3.948886e-01   p_joint 4.858447e-04

Joint ci ratio: 1.196969e-01	ci left: 4.581021e-04	ci right 5.168622e-04	k: 1071	n:2200000
Cons ci ratio: 3.271695e-03	ci left: 3.942226e-01	ci right 3.955149e-01	k: 868711	n:2200000
KS ci ratio: 2.266840e-01	ci left: 1.205112e-04	ci right 1.517387e-04	k: 298	n:2200000
RGS14   2200000 perm   2207 sec   (997 perm/sec)   p_kst 1.354545e-04   p_cons 3.948686e-01   p_joint 4.868182e-04

Joint ci ratio: 1.193079e-01	ci left: 4.591020e-04	ci right 5.177855e-04	k: 1078	n:2210000
Cons ci ratio: 3.264309e-03	ci left: 3.942206e-01	ci right 3.955100e-01	k: 872652	n:2210000
KS ci ratio: 2.251826e-01	ci left: 1.216734e-04	ci right 1.529643e-04	k: 302	n:2210000
RGS14   2210000 perm   2225 sec   (993 perm/sec)   p_kst 1.366516e-04   p_cons 3.948652e-01   p_joint 4.877828e-04

Joint ci ratio: 1.188680e-01	ci left: 4.605302e-04	ci right 5.191640e-04	k: 1086	n:2220000
Cons ci ratio: 3.256797e-03	ci left: 3.942443e-01	ci right 3.955308e-01	k: 876650	n:2220000
KS ci ratio: 2.233472e-01	ci left: 1.232511e-04	ci right 1.546539e-04	k: 307	n:2220000
RGS14   2220000 perm   2244 sec   (989 perm/sec)   p_kst 1.382883e-04   p_cons 3.948874e-01   p_joint 4.891892e-04

Joint ci ratio: 1.187588e-01	ci left: 4.593352e-04	ci right 5.177594e-04	k: 1088	n:2230000
Cons ci ratio: 3.249419e-03	ci left: 3.942556e-01	ci right 3.955393e-01	k: 880621	n:2230000
KS ci ratio: 2.229855e-01	ci left: 1.231217e-04	ci right 1.544338e-04	k: 308	n:2230000
RGS14   2230000 perm   2263 sec   (986 perm/sec)   p_kst 1.381166e-04   p_cons 3.948973e-01   p_joint 4.878924e-04

Joint ci ratio: 1.184871e-01	ci left: 4.594506e-04	ci right 5.177463e-04	k: 1093	n:2240000
Cons ci ratio: 3.242118e-03	ci left: 3.942629e-01	ci right 3.955436e-01	k: 884583	n:2240000
KS ci ratio: 2.222673e-01	ci left: 1.234152e-04	ci right 1.546869e-04	k: 310	n:2240000
RGS14   2240000 perm   2281 sec   (982 perm/sec)   p_kst 1.383929e-04   p_cons 3.949031e-01   p_joint 4.879464e-04

Joint ci ratio: 1.183791e-01	ci left: 4.582711e-04	ci right 5.163604e-04	k: 1095	n:2250000
Cons ci ratio: 3.234773e-03	ci left: 3.942838e-01	ci right 3.955618e-01	k: 888576	n:2250000
KS ci ratio: 2.219109e-01	ci left: 1.232864e-04	ci right 1.544686e-04	k: 311	n:2250000
RGS14   2250000 perm   2300 sec   (978 perm/sec)   p_kst 1.382222e-04   p_cons 3.949227e-01   p_joint 4.866667e-04

Joint ci ratio: 1.180563e-01	ci left: 4.588197e-04	ci right 5.168090e-04	k: 1101	n:2260000
Cons ci ratio: 3.227595e-03	ci left: 3.942874e-01	ci right 3.955625e-01	k: 892530	n:2260000
KS ci ratio: 2.205018e-01	ci left: 1.244127e-04	ci right 1.556529e-04	k: 315	n:2260000
RGS14   2260000 perm   2319 sec   (974 perm/sec)   p_kst 1.393805e-04   p_cons 3.949248e-01   p_joint 4.871681e-04

Joint ci ratio: 1.177362e-01	ci left: 4.593637e-04	ci right 5.172534e-04	k: 1107	n:2270000
Cons ci ratio: 3.220407e-03	ci left: 3.942992e-01	ci right 3.955715e-01	k: 896503	n:2270000
KS ci ratio: 2.201537e-01	ci left: 1.242809e-04	ci right 1.554320e-04	k: 316	n:2270000
RGS14   2270000 perm   2338 sec   (971 perm/sec)   p_kst 1.392070e-04   p_cons 3.949352e-01   p_joint 4.876652e-04

Joint ci ratio: 1.174715e-01	ci left: 4.594774e-04	ci right 5.172422e-04	k: 1112	n:2280000
Cons ci ratio: 3.213385e-03	ci left: 3.942935e-01	ci right 3.955629e-01	k: 900436	n:2280000
KS ci ratio: 2.198073e-01	ci left: 1.241502e-04	ci right 1.552130e-04	k: 317	n:2280000
RGS14   2280000 perm   2358 sec   (967 perm/sec)   p_kst 1.390351e-04   p_cons 3.949281e-01   p_joint 4.877193e-04

Joint ci ratio: 1.173135e-01	ci left: 4.587426e-04	ci right 5.163320e-04	k: 1115	n:2290000
Cons ci ratio: 3.206353e-03	ci left: 3.942960e-01	ci right 3.955627e-01	k: 904388	n:2290000
KS ci ratio: 2.198074e-01	ci left: 1.236081e-04	ci right 1.545352e-04	k: 317	n:2290000
RGS14   2290000 perm   2377 sec   (963 perm/sec)   p_kst 1.384279e-04   p_cons 3.949293e-01   p_joint 4.868996e-04

Joint ci ratio: 1.169994e-01	ci left: 4.592803e-04	ci right 5.167722e-04	k: 1121	n:2300000
Cons ci ratio: 3.199228e-03	ci left: 3.943195e-01	ci right 3.955834e-01	k: 908388	n:2300000
KS ci ratio: 2.198074e-01	ci left: 1.230706e-04	ci right 1.538633e-04	k: 317	n:2300000
RGS14   2300000 perm   2396 sec   (960 perm/sec)   p_kst 1.378261e-04   p_cons 3.949513e-01   p_joint 4.873913e-04

Joint ci ratio: 1.167396e-01	ci left: 4.593933e-04	ci right 5.167628e-04	k: 1126	n:2310000
Cons ci ratio: 3.192286e-03	ci left: 3.943223e-01	ci right 3.955836e-01	k: 912341	n:2310000
KS ci ratio: 2.194627e-01	ci left: 1.229469e-04	ci right 1.536539e-04	k: 318	n:2310000
RGS14   2310000 perm   2415 sec   (956 perm/sec)   p_kst 1.376623e-04   p_cons 3.949528e-01   p_joint 4.874459e-04

Joint ci ratio: 1.165330e-01	ci left: 4.590870e-04	ci right 5.163098e-04	k: 1130	n:2320000
Cons ci ratio: 3.185348e-03	ci left: 3.943312e-01	ci right 3.955897e-01	k: 916308	n:2320000
KS ci ratio: 2.191195e-01	ci left: 1.228244e-04	ci right 1.534463e-04	k: 319	n:2320000
RGS14   2320000 perm   2435 sec   (953 perm/sec)   p_kst 1.375000e-04   p_cons 3.949603e-01   p_joint 4.870690e-04

Joint ci ratio: 1.163788e-01	ci left: 4.583667e-04	ci right 5.154189e-04	k: 1133	n:2330000
Cons ci ratio: 3.178530e-03	ci left: 3.943289e-01	ci right 3.955847e-01	k: 920249	n:2330000
KS ci ratio: 2.187779e-01	ci left: 1.227029e-04	ci right 1.532404e-04	k: 320	n:2330000
RGS14   2330000 perm   2455 sec   (949 perm/sec)   p_kst 1.373391e-04   p_cons 3.949567e-01   p_joint 4.862661e-04

Joint ci ratio: 1.162763e-01	ci left: 4.572377e-04	ci right 5.140959e-04	k: 1135	n:2340000
Cons ci ratio: 3.171749e-03	ci left: 3.943274e-01	ci right 3.955805e-01	k: 924192	n:2340000
KS ci ratio: 2.187780e-01	ci left: 1.221785e-04	ci right 1.525855e-04	k: 320	n:2340000
RGS14   2340000 perm   2474 sec   (946 perm/sec)   p_kst 1.367521e-04   p_cons 3.949538e-01   p_joint 4.850427e-04

Joint ci ratio: 1.160213e-01	ci left: 4.573578e-04	ci right 5.140977e-04	k: 1140	n:2350000
Cons ci ratio: 3.165054e-03	ci left: 3.943196e-01	ci right 3.955700e-01	k: 928120	n:2350000
KS ci ratio: 2.180996e-01	ci left: 1.224631e-04	ci right 1.528338e-04	k: 322	n:2350000
RGS14   2350000 perm   2493 sec   (943 perm/sec)   p_kst 1.370213e-04   p_cons 3.949447e-01   p_joint 4.851064e-04

Joint ci ratio: 1.157679e-01	ci left: 4.574771e-04	ci right 5.140993e-04	k: 1145	n:2360000
Cons ci ratio: 3.158343e-03	ci left: 3.943207e-01	ci right 3.955685e-01	k: 932069	n:2360000
KS ci ratio: 2.177628e-01	ci left: 1.223448e-04	ci right 1.526330e-04	k: 323	n:2360000
RGS14   2360000 perm   2513 sec   (939 perm/sec)   p_kst 1.368644e-04   p_cons 3.949445e-01   p_joint 4.851695e-04

Joint ci ratio: 1.154660e-01	ci left: 4.580052e-04	ci right 5.145349e-04	k: 1151	n:2370000
Cons ci ratio: 3.151805e-03	ci left: 3.943020e-01	ci right 3.955472e-01	k: 935971	n:2370000
KS ci ratio: 2.174275e-01	ci left: 1.222275e-04	ci right 1.524339e-04	k: 324	n:2370000
RGS14   2370000 perm   2532 sec   (936 perm/sec)   p_kst 1.367089e-04   p_cons 3.949245e-01   p_joint 4.856540e-04

Joint ci ratio: 1.151167e-01	ci left: 4.589372e-04	ci right 5.153990e-04	k: 1158	n:2380000
Cons ci ratio: 3.145266e-03	ci left: 3.942898e-01	ci right 3.955323e-01	k: 939888	n:2380000
KS ci ratio: 2.170938e-01	ci left: 1.221112e-04	ci right 1.522364e-04	k: 325	n:2380000
RGS14   2380000 perm   2552 sec   (933 perm/sec)   p_kst 1.365546e-04   p_cons 3.949109e-01   p_joint 4.865546e-04

Joint ci ratio: 1.150176e-01	ci left: 4.578297e-04	ci right 5.141034e-04	k: 1160	n:2390000
Cons ci ratio: 3.138706e-03	ci left: 3.942869e-01	ci right 3.955268e-01	k: 943827	n:2390000
KS ci ratio: 2.170939e-01	ci left: 1.216003e-04	ci right 1.515994e-04	k: 325	n:2390000
RGS14   2390000 perm   2572 sec   (929 perm/sec)   p_kst 1.359833e-04   p_cons 3.949067e-01   p_joint 4.853556e-04

Joint ci ratio: 1.146233e-01	ci left: 4.591597e-04	ci right 5.153903e-04	k: 1168	n:2400000
Cons ci ratio: 3.132109e-03	ci left: 3.942961e-01	ci right 3.955334e-01	k: 947795	n:2400000
KS ci ratio: 2.164310e-01	ci left: 1.218817e-04	ci right 1.518463e-04	k: 327	n:2400000
RGS14   2400000 perm   2592 sec   (926 perm/sec)   p_kst 1.362500e-04   p_cons 3.949146e-01   p_joint 4.866667e-04

Joint ci ratio: 1.144766e-01	ci left: 4.584636e-04	ci right 5.145322e-04	k: 1171	n:2410000
Cons ci ratio: 3.125716e-03	ci left: 3.942803e-01	ci right 3.955150e-01	k: 951703	n:2410000
KS ci ratio: 2.164310e-01	ci left: 1.213760e-04	ci right 1.512162e-04	k: 327	n:2410000
RGS14   2410000 perm   2611 sec   (923 perm/sec)   p_kst 1.356846e-04   p_cons 3.948975e-01   p_joint 4.858921e-04

Joint ci ratio: 1.140394e-01	ci left: 4.601819e-04	ci right 5.162313e-04	k: 1180	n:2420000
Cons ci ratio: 3.119307e-03	ci left: 3.942729e-01	ci right 3.955051e-01	k: 955631	n:2420000
KS ci ratio: 2.161019e-01	ci left: 1.212653e-04	ci right 1.510269e-04	k: 328	n:2420000
RGS14   2420000 perm   2631 sec   (920 perm/sec)   p_kst 1.355372e-04   p_cons 3.948888e-01   p_joint 4.876033e-04

Joint ci ratio: 1.138949e-01	ci left: 4.594875e-04	ci right 5.153766e-04	k: 1183	n:2430000
Cons ci ratio: 3.112837e-03	ci left: 3.942812e-01	ci right 3.955108e-01	k: 959597	n:2430000
KS ci ratio: 2.157742e-01	ci left: 1.211555e-04	ci right 1.508392e-04	k: 329	n:2430000
RGS14   2430000 perm   2651 sec   (917 perm/sec)   p_kst 1.353909e-04   p_cons 3.948959e-01   p_joint 4.868313e-04

Joint ci ratio: 1.136074e-01	ci left: 4.599934e-04	ci right 5.157934e-04	k: 1189	n:2440000
Cons ci ratio: 3.106536e-03	ci left: 3.942694e-01	ci right 3.954965e-01	k: 963514	n:2440000
KS ci ratio: 2.151233e-01	ci left: 1.214344e-04	ci right 1.510848e-04	k: 331	n:2440000
RGS14   2440000 perm   2672 sec   (913 perm/sec)   p_kst 1.356557e-04   p_cons 3.948828e-01   p_joint 4.872951e-04

Joint ci ratio: 1.134169e-01	ci left: 4.597022e-04	ci right 5.153671e-04	k: 1193	n:2450000
Cons ci ratio: 3.100105e-03	ci left: 3.942837e-01	ci right 3.955083e-01	k: 967495	n:2450000
KS ci ratio: 2.148000e-01	ci left: 1.213250e-04	ci right 1.508982e-04	k: 332	n:2450000
RGS14   2450000 perm   2692 sec   (910 perm/sec)   p_kst 1.355102e-04   p_cons 3.948959e-01   p_joint 4.869388e-04

Joint ci ratio: 1.130859e-01	ci left: 4.605984e-04	ci right 5.161982e-04	k: 1200	n:2460000
Cons ci ratio: 3.093855e-03	ci left: 3.942761e-01	ci right 3.954982e-01	k: 971422	n:2460000
KS ci ratio: 2.141579e-01	ci left: 1.216011e-04	ci right 1.511414e-04	k: 334	n:2460000
RGS14   2460000 perm   2712 sec   (907 perm/sec)   p_kst 1.357724e-04   p_cons 3.948870e-01   p_joint 4.878049e-04

Joint ci ratio: 1.127577e-01	ci left: 4.614876e-04	ci right 5.170223e-04	k: 1207	n:2470000
Cons ci ratio: 3.087507e-03	ci left: 3.942895e-01	ci right 3.955091e-01	k: 975401	n:2470000
KS ci ratio: 2.138389e-01	ci left: 1.214920e-04	ci right 1.509561e-04	k: 335	n:2470000
RGS14   2470000 perm   2732 sec   (904 perm/sec)   p_kst 1.356275e-04   p_cons 3.948992e-01   p_joint 4.886640e-04

Joint ci ratio: 1.125251e-01	ci left: 4.615861e-04	ci right 5.170105e-04	k: 1212	n:2480000
Cons ci ratio: 3.081268e-03	ci left: 3.942919e-01	ci right 3.955091e-01	k: 979353	n:2480000
KS ci ratio: 2.135215e-01	ci left: 1.213837e-04	ci right 1.507721e-04	k: 336	n:2480000
RGS14   2480000 perm   2752 sec   (901 perm/sec)   p_kst 1.354839e-04   p_cons 3.949004e-01   p_joint 4.887097e-04

Joint ci ratio: 1.123400e-01	ci left: 4.612936e-04	ci right 5.165857e-04	k: 1216	n:2490000
Cons ci ratio: 3.075129e-03	ci left: 3.942847e-01	ci right 3.954995e-01	k: 983281	n:2490000
KS ci ratio: 2.135215e-01	ci left: 1.208962e-04	ci right 1.501666e-04	k: 336	n:2490000
RGS14   2490000 perm   2773 sec   (898 perm/sec)   p_kst 1.349398e-04   p_cons 3.948920e-01   p_joint 4.883534e-04

Joint ci ratio: 1.120641e-01	ci left: 4.617811e-04	ci right 5.169867e-04	k: 1222	n:2500000
Cons ci ratio: 3.068852e-03	ci left: 3.943048e-01	ci right 3.955171e-01	k: 987277	n:2500000
KS ci ratio: 2.128907e-01	ci left: 1.211699e-04	ci right 1.504086e-04	k: 338	n:2500000
RGS14   2500000 perm   2794 sec   (895 perm/sec)   p_kst 1.352000e-04   p_cons 3.949108e-01   p_joint 4.888000e-04

Joint ci ratio: 1.119269e-01	ci left: 4.611030e-04	ci right 5.161557e-04	k: 1225	n:2510000
Cons ci ratio: 3.062684e-03	ci left: 3.943135e-01	ci right 3.955234e-01	k: 991245	n:2510000
KS ci ratio: 2.125774e-01	ci left: 1.210644e-04	ci right 1.502290e-04	k: 339	n:2510000
RGS14   2510000 perm   2815 sec   (892 perm/sec)   p_kst 1.350598e-04   p_cons 3.949183e-01   p_joint 4.880478e-04

Joint ci ratio: 1.115183e-01	ci left: 4.627449e-04	ci right 5.177786e-04	k: 1234	n:2520000
Cons ci ratio: 3.056698e-03	ci left: 3.942996e-01	ci right 3.955070e-01	k: 995156	n:2520000
KS ci ratio: 2.122655e-01	ci left: 1.209597e-04	ci right 1.500507e-04	k: 340	n:2520000
RGS14   2520000 perm   2836 sec   (889 perm/sec)   p_kst 1.349206e-04   p_cons 3.949032e-01   p_joint 4.896825e-04

Joint ci ratio: 1.112483e-01	ci left: 4.632214e-04	ci right 5.181696e-04	k: 1240	n:2530000
Cons ci ratio: 3.050573e-03	ci left: 3.943130e-01	ci right 3.955181e-01	k: 999136	n:2530000
KS ci ratio: 2.116457e-01	ci left: 1.212301e-04	ci right 1.502901e-04	k: 342	n:2530000
RGS14   2530000 perm   2857 sec   (885 perm/sec)   p_kst 1.351779e-04   p_cons 3.949154e-01   p_joint 4.901186e-04

Joint ci ratio: 1.112036e-01	ci left: 4.617804e-04	ci right 5.165342e-04	k: 1241	n:2540000
Cons ci ratio: 3.044520e-03	ci left: 3.943208e-01	ci right 3.955235e-01	k: 1003102	n:2540000
KS ci ratio: 2.113379e-01	ci left: 1.211257e-04	ci right 1.501129e-04	k: 343	n:2540000
RGS14   2540000 perm   2878 sec   (883 perm/sec)   p_kst 1.350394e-04   p_cons 3.949220e-01   p_joint 4.885827e-04

Joint ci ratio: 1.110696e-01	ci left: 4.611132e-04	ci right 5.157178e-04	k: 1244	n:2550000
Cons ci ratio: 3.038727e-03	ci left: 3.942933e-01	ci right 3.954936e-01	k: 1006978	n:2550000
KS ci ratio: 2.113379e-01	ci left: 1.206507e-04	ci right 1.495242e-04	k: 343	n:2550000
RGS14   2550000 perm   2899 sec   (880 perm/sec)   p_kst 1.345098e-04   p_cons 3.948933e-01   p_joint 4.878431e-04

Joint ci ratio: 1.107144e-01	ci left: 4.623504e-04	ci right 5.169149e-04	k: 1252	n:2560000
Cons ci ratio: 3.032957e-03	ci left: 3.942675e-01	ci right 3.954655e-01	k: 1010858	n:2560000
KS ci ratio: 2.110314e-01	ci left: 1.205494e-04	ci right 1.493514e-04	k: 344	n:2560000
RGS14   2560000 perm   2921 sec   (876 perm/sec)   p_kst 1.343750e-04   p_cons 3.948664e-01   p_joint 4.890625e-04

Joint ci ratio: 1.106262e-01	ci left: 4.613080e-04	ci right 5.157033e-04	k: 1254	n:2570000
Cons ci ratio: 3.026848e-03	ci left: 3.943007e-01	ci right 3.954964e-01	k: 1014889	n:2570000
KS ci ratio: 2.110315e-01	ci left: 1.200803e-04	ci right 1.487703e-04	k: 344	n:2570000
RGS14   2570000 perm   2942 sec   (874 perm/sec)   p_kst 1.338521e-04   p_cons 3.948984e-01   p_joint 4.879377e-04

Joint ci ratio: 1.104504e-01	ci left: 4.610275e-04	ci right 5.152977e-04	k: 1258	n:2580000
Cons ci ratio: 3.020932e-03	ci left: 3.943089e-01	ci right 3.955022e-01	k: 1018856	n:2580000
KS ci ratio: 2.104224e-01	ci left: 1.203492e-04	ci right 1.490097e-04	k: 346	n:2580000
RGS14   2580000 perm   2963 sec   (871 perm/sec)   p_kst 1.341085e-04   p_cons 3.949054e-01   p_joint 4.875969e-04

Joint ci ratio: 1.103190e-01	ci left: 4.603738e-04	ci right 5.144984e-04	k: 1261	n:2590000
Cons ci ratio: 3.015146e-03	ci left: 3.943019e-01	ci right 3.954929e-01	k: 1022784	n:2590000
KS ci ratio: 2.101199e-01	ci left: 1.202503e-04	ci right 1.488407e-04	k: 347	n:2590000
RGS14   2590000 perm   2984 sec   (868 perm/sec)   p_kst 1.339768e-04   p_cons 3.948973e-01   p_joint 4.868726e-04

Joint ci ratio: 1.098844e-01	ci left: 4.623434e-04	ci right 5.164716e-04	k: 1271	n:2600000
Cons ci ratio: 3.009444e-03	ci left: 3.942869e-01	ci right 3.954756e-01	k: 1026691	n:2600000
KS ci ratio: 2.095187e-01	ci left: 1.205166e-04	ci right 1.490779e-04	k: 349	n:2600000
RGS14   2600000 perm   3006 sec   (865 perm/sec)   p_kst 1.342308e-04   p_cons 3.948812e-01   p_joint 4.888462e-04

Joint ci ratio: 1.095404e-01	ci left: 4.635530e-04	ci right 5.176419e-04	k: 1279	n:2610000
Cons ci ratio: 3.003547e-03	ci left: 3.943080e-01	ci right 3.954945e-01	k: 1030692	n:2610000
KS ci ratio: 2.089226e-01	ci left: 1.207810e-04	ci right 1.493131e-04	k: 351	n:2610000
RGS14   2610000 perm   3028 sec   (862 perm/sec)   p_kst 1.344828e-04   p_cons 3.949011e-01   p_joint 4.900383e-04

Joint ci ratio: 1.093271e-01	ci left: 4.636399e-04	ci right 5.176268e-04	k: 1284	n:2620000
Cons ci ratio: 2.997788e-03	ci left: 3.943126e-01	ci right 3.954968e-01	k: 1034650	n:2620000
KS ci ratio: 2.089226e-01	ci left: 1.203200e-04	ci right 1.487432e-04	k: 351	n:2620000
RGS14   2620000 perm   3049 sec   (859 perm/sec)   p_kst 1.339695e-04   p_cons 3.949046e-01   p_joint 4.900763e-04

Joint ci ratio: 1.091150e-01	ci left: 4.637262e-04	ci right 5.176117e-04	k: 1289	n:2630000
Cons ci ratio: 2.992098e-03	ci left: 3.943114e-01	ci right 3.954934e-01	k: 1038593	n:2630000
KS ci ratio: 2.080379e-01	ci left: 1.209436e-04	ci right 1.493778e-04	k: 354	n:2630000
RGS14   2630000 perm   3071 sec   (856 perm/sec)   p_kst 1.346008e-04   p_cons 3.949023e-01   p_joint 4.901141e-04

Joint ci ratio: 1.089042e-01	ci left: 4.638119e-04	ci right 5.175966e-04	k: 1294	n:2640000
Cons ci ratio: 2.986487e-03	ci left: 3.943027e-01	ci right 3.954824e-01	k: 1042516	n:2640000
KS ci ratio: 2.065880e-01	ci left: 1.222811e-04	ci right 1.508040e-04	k: 359	n:2640000
RGS14   2640000 perm   3092 sec   (854 perm/sec)   p_kst 1.359848e-04   p_cons 3.948924e-01   p_joint 4.901515e-04

Joint ci ratio: 1.087364e-01	ci left: 4.635301e-04	ci right 5.171939e-04	k: 1298	n:2650000
Cons ci ratio: 2.980562e-03	ci left: 3.943495e-01	ci right 3.955270e-01	k: 1046586	n:2650000
KS ci ratio: 2.060165e-01	ci left: 1.225354e-04	ci right 1.510286e-04	k: 361	n:2650000
RGS14   2650000 perm   3114 sec   (851 perm/sec)   p_kst 1.362264e-04   p_cons 3.949381e-01   p_joint 4.898113e-04

Joint ci ratio: 1.084030e-01	ci left: 4.647133e-04	ci right 5.183387e-04	k: 1306	n:2660000
Cons ci ratio: 2.974829e-03	ci left: 3.943707e-01	ci right 3.955460e-01	k: 1050589	n:2660000
KS ci ratio: 2.054497e-01	ci left: 1.227879e-04	ci right 1.512514e-04	k: 363	n:2660000
RGS14   2660000 perm   3135 sec   (848 perm/sec)   p_kst 1.364662e-04   p_cons 3.949583e-01   p_joint 4.909774e-04

Joint ci ratio: 1.081963e-01	ci left: 4.647948e-04	ci right 5.183207e-04	k: 1311	n:2670000
Cons ci ratio: 2.969408e-03	ci left: 3.943469e-01	ci right 3.955200e-01	k: 1054472	n:2670000
KS ci ratio: 2.046082e-01	ci left: 1.233939e-04	ci right 1.518661e-04	k: 366	n:2670000
RGS14   2670000 perm   3157 sec   (846 perm/sec)   p_kst 1.370787e-04   p_cons 3.949333e-01   p_joint 4.910112e-04

Joint ci ratio: 1.081552e-01	ci left: 4.634235e-04	ci right 5.167700e-04	k: 1312	n:2680000
Cons ci ratio: 2.963664e-03	ci left: 3.943800e-01	ci right 3.955509e-01	k: 1058507	n:2680000
KS ci ratio: 2.046083e-01	ci left: 1.229335e-04	ci right 1.512994e-04	k: 366	n:2680000
RGS14   2680000 perm   3178 sec   (843 perm/sec)   p_kst 1.365672e-04   p_cons 3.949653e-01   p_joint 4.895522e-04

Joint ci ratio: 1.078680e-01	ci left: 4.642327e-04	ci right 5.175214e-04	k: 1319	n:2690000
Cons ci ratio: 2.958318e-03	ci left: 3.943541e-01	ci right 3.955228e-01	k: 1062384	n:2690000
KS ci ratio: 2.046083e-01	ci left: 1.224765e-04	ci right 1.507370e-04	k: 366	n:2690000
RGS14   2690000 perm   3200 sec   (841 perm/sec)   p_kst 1.360595e-04   p_cons 3.949383e-01   p_joint 4.903346e-04

Joint ci ratio: 1.076236e-01	ci left: 4.646756e-04	ci right 5.178867e-04	k: 1325	n:2700000
Cons ci ratio: 2.952831e-03	ci left: 3.943557e-01	ci right 3.955223e-01	k: 1066335	n:2700000
KS ci ratio: 2.037771e-01	ci left: 1.230772e-04	ci right 1.513466e-04	k: 369	n:2700000
RGS14   2700000 perm   3221 sec   (838 perm/sec)   p_kst 1.366667e-04   p_cons 3.949389e-01   p_joint 4.907407e-04

Joint ci ratio: 1.074213e-01	ci left: 4.647564e-04	ci right 5.178703e-04	k: 1330	n:2710000
Cons ci ratio: 2.947588e-03	ci left: 3.943227e-01	ci right 3.954871e-01	k: 1070192	n:2710000
KS ci ratio: 2.032285e-01	ci left: 1.233234e-04	ci right 1.515636e-04	k: 371	n:2710000
RGS14   2710000 perm   3243 sec   (836 perm/sec)   p_kst 1.369004e-04   p_cons 3.949048e-01   p_joint 4.907749e-04

Joint ci ratio: 1.072602e-01	ci left: 4.644788e-04	ci right 5.174764e-04	k: 1334	n:2720000
Cons ci ratio: 2.942251e-03	ci left: 3.943098e-01	ci right 3.954720e-01	k: 1074103	n:2720000
KS ci ratio: 2.026844e-01	ci left: 1.235680e-04	ci right 1.517790e-04	k: 373	n:2720000
RGS14   2720000 perm   3265 sec   (833 perm/sec)   p_kst 1.371324e-04   p_cons 3.948908e-01   p_joint 4.904412e-04

Joint ci ratio: 1.070200e-01	ci left: 4.649163e-04	ci right 5.178376e-04	k: 1340	n:2730000
Cons ci ratio: 2.936951e-03	ci left: 3.942955e-01	ci right 3.954556e-01	k: 1078010	n:2730000
KS ci ratio: 2.021446e-01	ci left: 1.238108e-04	ci right 1.519927e-04	k: 375	n:2730000
RGS14   2730000 perm   3288 sec   (830 perm/sec)   p_kst 1.373626e-04   p_cons 3.948755e-01   p_joint 4.908425e-04

Joint ci ratio: 1.067021e-01	ci left: 4.660612e-04	ci right 5.189453e-04	k: 1348	n:2740000
Cons ci ratio: 2.931553e-03	ci left: 3.943022e-01	ci right 3.954601e-01	k: 1081974	n:2740000
KS ci ratio: 2.016091e-01	ci left: 1.240520e-04	ci right 1.522048e-04	k: 377	n:2740000
RGS14   2740000 perm   3310 sec   (828 perm/sec)   p_kst 1.375912e-04   p_cons 3.948810e-01   p_joint 4.919708e-04

Joint ci ratio: 1.066232e-01	ci left: 4.650743e-04	ci right 5.178049e-04	k: 1350	n:2750000
Cons ci ratio: 2.926191e-03	ci left: 3.943076e-01	ci right 3.954635e-01	k: 1085935	n:2750000
KS ci ratio: 2.013430e-01	ci left: 1.239462e-04	ci right 1.520333e-04	k: 378	n:2750000
RGS14   2750000 perm   3332 sec   (825 perm/sec)   p_kst 1.374545e-04   p_cons 3.948855e-01   p_joint 4.909091e-04

Joint ci ratio: 1.065050e-01	ci left: 4.644473e-04	ci right 5.170448e-04	k: 1353	n:2760000
Cons ci ratio: 2.920876e-03	ci left: 3.943102e-01	ci right 3.954639e-01	k: 1089888	n:2760000
KS ci ratio: 2.010779e-01	ci left: 1.238412e-04	ci right 1.518630e-04	k: 379	n:2760000
RGS14   2760000 perm   3355 sec   (823 perm/sec)   p_kst 1.373188e-04   p_cons 3.948870e-01   p_joint 4.902174e-04

Joint ci ratio: 1.063873e-01	ci left: 4.638247e-04	ci right 5.162900e-04	k: 1356	n:2770000
Cons ci ratio: 2.915781e-03	ci left: 3.942813e-01	ci right 3.954330e-01	k: 1093754	n:2770000
KS ci ratio: 2.010779e-01	ci left: 1.233941e-04	ci right 1.513147e-04	k: 379	n:2770000
RGS14   2770000 perm   3377 sec   (820 perm/sec)   p_kst 1.368231e-04   p_cons 3.948570e-01   p_joint 4.895307e-04

Joint ci ratio: 1.061528e-01	ci left: 4.642572e-04	ci right 5.166485e-04	k: 1362	n:2780000
Cons ci ratio: 2.910551e-03	ci left: 3.942793e-01	ci right 3.954289e-01	k: 1097694	n:2780000
KS ci ratio: 2.010780e-01	ci left: 1.229502e-04	ci right 1.507705e-04	k: 379	n:2780000
RGS14   2780000 perm   3400 sec   (818 perm/sec)   p_kst 1.363309e-04   p_cons 3.948540e-01   p_joint 4.899281e-04

Joint ci ratio: 1.059974e-01	ci left: 4.639889e-04	ci right 5.162684e-04	k: 1366	n:2790000
Cons ci ratio: 2.905231e-03	ci left: 3.942966e-01	ci right 3.954441e-01	k: 1101688	n:2790000
KS ci ratio: 2.008139e-01	ci left: 1.228499e-04	ci right 1.506065e-04	k: 380	n:2790000
RGS14   2790000 perm   3423 sec   (815 perm/sec)   p_kst 1.362007e-04   p_cons 3.948703e-01   p_joint 4.896057e-04

Joint ci ratio: 1.058813e-01	ci left: 4.633748e-04	ci right 5.155244e-04	k: 1369	n:2800000
Cons ci ratio: 2.899908e-03	ci left: 3.943192e-01	ci right 3.954646e-01	k: 1105697	n:2800000
KS ci ratio: 2.005509e-01	ci left: 1.227504e-04	ci right 1.504437e-04	k: 381	n:2800000
RGS14   2800000 perm   3445 sec   (813 perm/sec)   p_kst 1.360714e-04   p_cons 3.948918e-01   p_joint 4.889286e-04

Joint ci ratio: 1.056887e-01	ci left: 4.634581e-04	ci right 5.155162e-04	k: 1374	n:2810000
Cons ci ratio: 2.894730e-03	ci left: 3.943223e-01	ci right 3.954658e-01	k: 1109652	n:2810000
KS ci ratio: 1.997680e-01	ci left: 1.233277e-04	ci right 1.510293e-04	k: 384	n:2810000
RGS14   2810000 perm   3469 sec   (810 perm/sec)   p_kst 1.366548e-04   p_cons 3.948940e-01   p_joint 4.889680e-04

Joint ci ratio: 1.054206e-01	ci left: 4.642313e-04	ci right 5.162359e-04	k: 1381	n:2820000
Cons ci ratio: 2.889471e-03	ci left: 3.943436e-01	ci right 3.954850e-01	k: 1113658	n:2820000
KS ci ratio: 1.995091e-01	ci left: 1.232272e-04	ci right 1.508661e-04	k: 385	n:2820000
RGS14   2820000 perm   3492 sec   (808 perm/sec)   p_kst 1.365248e-04   p_cons 3.949142e-01   p_joint 4.897163e-04

Joint ci ratio: 1.050789e-01	ci left: 4.656875e-04	ci right 5.176757e-04	k: 1390	n:2830000
Cons ci ratio: 2.884449e-03	ci left: 3.943301e-01	ci right 3.954695e-01	k: 1117566	n:2830000
KS ci ratio: 1.982292e-01	ci left: 1.244706e-04	ci right 1.521876e-04	k: 390	n:2830000
RGS14   2830000 perm   3515 sec   (805 perm/sec)   p_kst 1.378092e-04   p_cons 3.948996e-01   p_joint 4.911661e-04

Joint ci ratio: 1.048530e-01	ci left: 4.661049e-04	ci right 5.180210e-04	k: 1396	n:2840000
Cons ci ratio: 2.879415e-03	ci left: 3.943230e-01	ci right 3.954604e-01	k: 1121492	n:2840000
KS ci ratio: 1.977241e-01	ci left: 1.247016e-04	ci right 1.523908e-04	k: 392	n:2840000
RGS14   2840000 perm   3538 sec   (803 perm/sec)   p_kst 1.380282e-04   p_cons 3.948915e-01   p_joint 4.915493e-04

Joint ci ratio: 1.045540e-01	ci left: 4.672030e-04	ci right 5.190838e-04	k: 1404	n:2850000
Cons ci ratio: 2.874526e-03	ci left: 3.942963e-01	ci right 3.954317e-01	k: 1125362	n:2850000
KS ci ratio: 1.972229e-01	ci left: 1.249311e-04	ci right 1.525925e-04	k: 394	n:2850000
RGS14   2850000 perm   3561 sec   (800 perm/sec)   p_kst 1.382456e-04   p_cons 3.948639e-01   p_joint 4.926316e-04

Joint ci ratio: 1.044055e-01	ci left: 4.669315e-04	ci right 5.187040e-04	k: 1408	n:2860000
Cons ci ratio: 2.869527e-03	ci left: 3.942922e-01	ci right 3.954255e-01	k: 1129296	n:2860000
KS ci ratio: 1.972230e-01	ci left: 1.244943e-04	ci right 1.520590e-04	k: 394	n:2860000
RGS14   2860000 perm   3585 sec   (798 perm/sec)   p_kst 1.377622e-04   p_cons 3.948587e-01   p_joint 4.923077e-04

Joint ci ratio: 1.041103e-01	ci left: 4.680193e-04	ci right 5.197568e-04	k: 1416	n:2870000
Cons ci ratio: 2.864547e-03	ci left: 3.942891e-01	ci right 3.954205e-01	k: 1133233	n:2870000
KS ci ratio: 1.967255e-01	ci left: 1.247230e-04	ci right 1.522604e-04	k: 396	n:2870000
RGS14   2870000 perm   3608 sec   (795 perm/sec)   p_kst 1.379791e-04   p_cons 3.948547e-01   p_joint 4.933798e-04

Joint ci ratio: 1.039271e-01	ci left: 4.680852e-04	ci right 5.197333e-04	k: 1421	n:2880000
Cons ci ratio: 2.859775e-03	ci left: 3.942559e-01	ci right 3.953853e-01	k: 1137083	n:2880000
KS ci ratio: 1.962318e-01	ci left: 1.249503e-04	ci right 1.524602e-04	k: 398	n:2880000
RGS14   2880000 perm   3632 sec   (793 perm/sec)   p_kst 1.381944e-04   p_cons 3.948205e-01   p_joint 4.934028e-04

Joint ci ratio: 1.038542e-01	ci left: 4.671396e-04	ci right 5.186450e-04	k: 1423	n:2890000
Cons ci ratio: 2.854753e-03	ci left: 3.942685e-01	ci right 3.953960e-01	k: 1141065	n:2890000
KS ci ratio: 1.962319e-01	ci left: 1.245179e-04	ci right 1.519327e-04	k: 398	n:2890000
RGS14   2890000 perm   3655 sec   (791 perm/sec)   p_kst 1.377163e-04   p_cons 3.948322e-01   p_joint 4.923875e-04

Joint ci ratio: 1.035275e-01	ci left: 4.685517e-04	ci right 5.200404e-04	k: 1432	n:2900000
Cons ci ratio: 2.849901e-03	ci left: 3.942570e-01	ci right 3.953825e-01	k: 1144977	n:2900000
KS ci ratio: 1.952555e-01	ci left: 1.254003e-04	ci right 1.528556e-04	k: 402	n:2900000
RGS14   2900000 perm   3678 sec   (788 perm/sec)   p_kst 1.386207e-04   p_cons 3.948197e-01   p_joint 4.937931e-04

Joint ci ratio: 1.033833e-01	ci left: 4.682806e-04	ci right 5.196635e-04	k: 1436	n:2910000
Cons ci ratio: 2.844890e-03	ci left: 3.942765e-01	ci right 3.954000e-01	k: 1148979	n:2910000
KS ci ratio: 1.952556e-01	ci left: 1.249693e-04	ci right 1.523303e-04	k: 402	n:2910000
RGS14   2910000 perm   3702 sec   (786 perm/sec)   p_kst 1.381443e-04   p_cons 3.948381e-01   p_joint 4.934708e-04

Joint ci ratio: 1.031681e-01	ci left: 4.686786e-04	ci right 5.199916e-04	k: 1442	n:2920000
Cons ci ratio: 2.839940e-03	ci left: 3.942900e-01	ci right 3.954116e-01	k: 1152964	n:2920000
KS ci ratio: 1.952556e-01	ci left: 1.245413e-04	ci right 1.518087e-04	k: 402	n:2920000
RGS14   2920000 perm   3726 sec   (784 perm/sec)   p_kst 1.376712e-04   p_cons 3.948507e-01   p_joint 4.938356e-04

Joint ci ratio: 1.030254e-01	ci left: 4.684090e-04	ci right 5.196173e-04	k: 1446	n:2930000
Cons ci ratio: 2.835263e-03	ci left: 3.942617e-01	ci right 3.953815e-01	k: 1156827	n:2930000
KS ci ratio: 1.952556e-01	ci left: 1.241163e-04	ci right 1.512905e-04	k: 402	n:2930000
RGS14   2930000 perm   3750 sec   (781 perm/sec)   p_kst 1.372014e-04   p_cons 3.948215e-01   p_joint 4.935154e-04

Joint ci ratio: 1.027771e-01	ci left: 4.691355e-04	ci right 5.202921e-04	k: 1453	n:2940000
Cons ci ratio: 2.830397e-03	ci left: 3.942694e-01	ci right 3.953873e-01	k: 1160795	n:2940000
KS ci ratio: 1.947729e-01	ci left: 1.243412e-04	ci right 1.514894e-04	k: 404	n:2940000
RGS14   2940000 perm   3774 sec   (779 perm/sec)   p_kst 1.374150e-04   p_cons 3.948282e-01   p_joint 4.942177e-04

Joint ci ratio: 1.025306e-01	ci left: 4.698572e-04	ci right 5.209622e-04	k: 1460	n:2950000
Cons ci ratio: 2.825598e-03	ci left: 3.942699e-01	ci right 3.953859e-01	k: 1164742	n:2950000
KS ci ratio: 1.945329e-01	ci left: 1.242421e-04	ci right 1.513314e-04	k: 405	n:2950000
RGS14   2950000 perm   3798 sec   (777 perm/sec)   p_kst 1.372881e-04   p_cons 3.948278e-01   p_joint 4.949153e-04

Joint ci ratio: 1.023905e-01	ci left: 4.695865e-04	ci right 5.205881e-04	k: 1464	n:2960000
Cons ci ratio: 2.820746e-03	ci left: 3.942836e-01	ci right 3.953977e-01	k: 1168728	n:2960000
KS ci ratio: 1.942938e-01	ci left: 1.241438e-04	ci right 1.511744e-04	k: 406	n:2960000
RGS14   2960000 perm   3824 sec   (774 perm/sec)   p_kst 1.371622e-04   p_cons 3.948405e-01   p_joint 4.945946e-04

Joint ci ratio: 1.020774e-01	ci left: 4.709583e-04	ci right 5.219430e-04	k: 1473	n:2970000
Cons ci ratio: 2.816073e-03	ci left: 3.942709e-01	ci right 3.953831e-01	k: 1172636	n:2970000
KS ci ratio: 1.940556e-01	ci left: 1.240461e-04	ci right 1.510184e-04	k: 407	n:2970000
RGS14   2970000 perm   3848 sec   (772 perm/sec)   p_kst 1.370370e-04   p_cons 3.948269e-01   p_joint 4.959596e-04

Joint ci ratio: 1.019737e-01	ci left: 4.703589e-04	ci right 5.212239e-04	k: 1476	n:2980000
Cons ci ratio: 2.811501e-03	ci left: 3.942453e-01	ci right 3.953556e-01	k: 1176505	n:2980000
KS ci ratio: 1.938182e-01	ci left: 1.239492e-04	ci right 1.508635e-04	k: 408	n:2980000
RGS14   2980000 perm   3872 sec   (770 perm/sec)   p_kst 1.369128e-04   p_cons 3.948003e-01   p_joint 4.953020e-04

Joint ci ratio: 1.018015e-01	ci left: 4.704154e-04	ci right 5.211956e-04	k: 1481	n:2990000
Cons ci ratio: 2.806758e-03	ci left: 3.942526e-01	ci right 3.953610e-01	k: 1180472	n:2990000
KS ci ratio: 1.935817e-01	ci left: 1.238528e-04	ci right 1.507096e-04	k: 409	n:2990000
RGS14   2990000 perm   3897 sec   (767 perm/sec)   p_kst 1.367893e-04   p_cons 3.948067e-01   p_joint 4.953177e-04

Joint ci ratio: 1.016987e-01	ci left: 4.698219e-04	ci right 5.204837e-04	k: 1484	n:3000000
Cons ci ratio: 2.802098e-03	ci left: 3.942498e-01	ci right 3.953564e-01	k: 1184409	n:3000000
KS ci ratio: 1.933461e-01	ci left: 1.237572e-04	ci right 1.505567e-04	k: 410	n:3000000
RGS14   3000000 perm   3921 sec   (765 perm/sec)   p_kst 1.366667e-04   p_cons 3.948030e-01   p_joint 4.946667e-04

Joint ci ratio: 1.015620e-01	ci left: 4.695562e-04	ci right 5.201172e-04	k: 1488	n:3010000
Cons ci ratio: 2.797381e-03	ci left: 3.942607e-01	ci right 3.953654e-01	k: 1188387	n:3010000
KS ci ratio: 1.928773e-01	ci left: 1.239784e-04	ci right 1.507530e-04	k: 412	n:3010000
RGS14   3010000 perm   3946 sec   (763 perm/sec)   p_kst 1.368771e-04   p_cons 3.948130e-01   p_joint 4.943522e-04

Joint ci ratio: 1.014599e-01	ci left: 4.689695e-04	ci right 5.194135e-04	k: 1491	n:3020000
Cons ci ratio: 2.792911e-03	ci left: 3.942334e-01	ci right 3.953363e-01	k: 1192250	n:3020000
KS ci ratio: 1.928774e-01	ci left: 1.235678e-04	ci right 1.502538e-04	k: 412	n:3020000
RGS14   3020000 perm   3970 sec   (761 perm/sec)   p_kst 1.364238e-04   p_cons 3.947848e-01   p_joint 4.937086e-04

Joint ci ratio: 1.013920e-01	ci left: 4.680650e-04	ci right 5.183761e-04	k: 1493	n:3030000
Cons ci ratio: 2.788190e-03	ci left: 3.942529e-01	ci right 3.953539e-01	k: 1196254	n:3030000
KS ci ratio: 1.926443e-01	ci left: 1.234741e-04	ci right 1.501039e-04	k: 413	n:3030000
RGS14   3030000 perm   3995 sec   (758 perm/sec)   p_kst 1.363036e-04   p_cons 3.948033e-01   p_joint 4.927393e-04

Joint ci ratio: 1.011552e-01	ci left: 4.687697e-04	ci right 5.190319e-04	k: 1500	n:3040000
Cons ci ratio: 2.783612e-03	ci left: 3.942518e-01	ci right 3.953511e-01	k: 1200196	n:3040000
KS ci ratio: 1.921806e-01	ci left: 1.236942e-04	ci right 1.502997e-04	k: 415	n:3040000
RGS14   3040000 perm   4020 sec   (756 perm/sec)   p_kst 1.365132e-04   p_cons 3.948013e-01   p_joint 4.934211e-04

Joint ci ratio: 1.010543e-01	ci left: 4.681915e-04	ci right 5.183386e-04	k: 1503	n:3050000
Cons ci ratio: 2.779192e-03	ci left: 3.942274e-01	ci right 3.953249e-01	k: 1204067	n:3050000
KS ci ratio: 1.919501e-01	ci left: 1.236007e-04	ci right 1.501505e-04	k: 416	n:3050000
RGS14   3050000 perm   4045 sec   (754 perm/sec)   p_kst 1.363934e-04   p_cons 3.947761e-01   p_joint 4.927869e-04

Joint ci ratio: 1.008868e-01	ci left: 4.682541e-04	ci right 5.183199e-04	k: 1508	n:3060000
Cons ci ratio: 2.774660e-03	ci left: 3.942261e-01	ci right 3.953218e-01	k: 1208008	n:3060000
KS ci ratio: 1.919501e-01	ci left: 1.231968e-04	ci right 1.496598e-04	k: 416	n:3060000
RGS14   3060000 perm   4070 sec   (752 perm/sec)   p_kst 1.359477e-04   p_cons 3.947739e-01   p_joint 4.928105e-04

Joint ci ratio: 1.007201e-01	ci left: 4.683165e-04	ci right 5.183013e-04	k: 1513	n:3070000
Cons ci ratio: 2.770108e-03	ci left: 3.942320e-01	ci right 3.953259e-01	k: 1211971	n:3070000
KS ci ratio: 1.917204e-01	ci left: 1.231056e-04	ci right 1.495137e-04	k: 417	n:3070000
RGS14   3070000 perm   4095 sec   (750 perm/sec)   p_kst 1.358306e-04   p_cons 3.947788e-01   p_joint 4.928339e-04

Joint ci ratio: 1.006869e-01	ci left: 4.671125e-04	ci right 5.169513e-04	k: 1514	n:3080000
Cons ci ratio: 2.765690e-03	ci left: 3.942187e-01	ci right 3.953108e-01	k: 1215875	n:3080000
KS ci ratio: 1.917204e-01	ci left: 1.227059e-04	ci right 1.490283e-04	k: 417	n:3080000
RGS14   3080000 perm   4120 sec   (748 perm/sec)   p_kst 1.353896e-04   p_cons 3.947646e-01   p_joint 4.915584e-04

Joint ci ratio: 1.005874e-01	ci left: 4.665472e-04	ci right 5.162737e-04	k: 1517	n:3090000
Cons ci ratio: 2.761267e-03	ci left: 3.942100e-01	ci right 3.953003e-01	k: 1219793	n:3090000
KS ci ratio: 1.917205e-01	ci left: 1.223088e-04	ci right 1.485460e-04	k: 417	n:3090000
RGS14   3090000 perm   4145 sec   (746 perm/sec)   p_kst 1.349515e-04   p_cons 3.947550e-01   p_joint 4.909385e-04

Joint ci ratio: 1.004221e-01	ci left: 4.666146e-04	ci right 5.162617e-04	k: 1522	n:3100000
Cons ci ratio: 2.756840e-03	ci left: 3.942055e-01	ci right 3.952941e-01	k: 1223724	n:3100000
KS ci ratio: 1.914916e-01	ci left: 1.222213e-04	ci right 1.484048e-04	k: 418	n:3100000
RGS14   3100000 perm   4170 sec   (743 perm/sec)   p_kst 1.348387e-04   p_cons 3.947497e-01   p_joint 4.909677e-04

Joint ci ratio: 1.002905e-01	ci left: 4.663681e-04	ci right 5.159201e-04	k: 1526	n:3110000
Cons ci ratio: 2.752464e-03	ci left: 3.941959e-01	ci right 3.952827e-01	k: 1227639	n:3110000
KS ci ratio: 1.912635e-01	ci left: 1.221345e-04	ci right 1.482646e-04	k: 419	n:3110000
RGS14   3110000 perm   4195 sec   (741 perm/sec)   p_kst 1.347267e-04   p_cons 3.947392e-01   p_joint 4.906752e-04

Joint ci ratio: 1.002577e-01	ci left: 4.651858e-04	ci right 5.145951e-04	k: 1527	n:3120000
Cons ci ratio: 2.747995e-03	ci left: 3.942063e-01	ci right 3.952913e-01	k: 1231616	n:3120000
KS ci ratio: 1.910362e-01	ci left: 1.220482e-04	ci right 1.481252e-04	k: 420	n:3120000
RGS14   3120000 perm   4221 sec   (739 perm/sec)   p_kst 1.346154e-04   p_cons 3.947487e-01   p_joint 4.894231e-04

Joint ci ratio: 1.001595e-01	ci left: 4.646340e-04	ci right 5.139335e-04	k: 1530	n:3130000
Cons ci ratio: 2.743416e-03	ci left: 3.942396e-01	ci right 3.953229e-01	k: 1235665	n:3130000
KS ci ratio: 1.910362e-01	ci left: 1.216583e-04	ci right 1.476519e-04	k: 420	n:3130000
RGS14   3130000 perm   4246 sec   (737 perm/sec)   p_kst 1.341853e-04   p_cons 3.947812e-01   p_joint 4.888179e-04

Joint ci ratio: 9.999635e-02	ci left: 4.647068e-04	ci right 5.139290e-04	k: 1535	n:3140000
Cons ci ratio: 2.738925e-03	ci left: 3.942612e-01	ci right 3.953428e-01	k: 1239678	n:3140000
KS ci ratio: 1.905841e-01	ci left: 1.218773e-04	ci right 1.478491e-04	k: 422	n:3140000
RGS14   3140000 perm   4271 sec   (735 perm/sec)   p_kst 1.343949e-04   p_cons 3.948019e-01   p_joint 4.888535e-04

Joint ci ratio: 9.986641e-02	ci left: 4.644696e-04	ci right 5.135991e-04	k: 1539	n:3150000
Cons ci ratio: 2.734563e-03	ci left: 3.942639e-01	ci right 3.953439e-01	k: 1243632	n:3150000
KS ci ratio: 1.901351e-01	ci left: 1.220951e-04	ci right 1.480448e-04	k: 424	n:3150000
RGS14   3150000 perm   4297 sec   (733 perm/sec)   p_kst 1.346032e-04   p_cons 3.948038e-01   p_joint 4.885714e-04

Joint ci ratio: 9.960798e-02	ci left: 4.654683e-04	ci right 5.145685e-04	k: 1547	n:3160000
Cons ci ratio: 2.730367e-03	ci left: 3.942414e-01	ci right 3.953196e-01	k: 1247506	n:3160000
KS ci ratio: 1.894675e-01	ci left: 1.226130e-04	ci right 1.485708e-04	k: 427	n:3160000
RGS14   3160000 perm   4323 sec   (731 perm/sec)   p_kst 1.351266e-04   p_cons 3.947804e-01   p_joint 4.895570e-04

Joint ci ratio: 9.947955e-02	ci left: 4.652304e-04	ci right 5.142385e-04	k: 1551	n:3170000
Cons ci ratio: 2.725911e-03	ci left: 3.942678e-01	ci right 3.953443e-01	k: 1251535	n:3170000
KS ci ratio: 1.892465e-01	ci left: 1.225267e-04	ci right 1.484325e-04	k: 428	n:3170000
RGS14   3170000 perm   4348 sec   (729 perm/sec)   p_kst 1.350158e-04   p_cons 3.948060e-01   p_joint 4.892744e-04

Joint ci ratio: 9.925593e-02	ci left: 4.659139e-04	ci right 5.148773e-04	k: 1558	n:3180000
Cons ci ratio: 2.721612e-03	ci left: 3.942702e-01	ci right 3.953450e-01	k: 1255488	n:3180000
KS ci ratio: 1.888069e-01	ci left: 1.227406e-04	ci right 1.486244e-04	k: 430	n:3180000
RGS14   3180000 perm   4373 sec   (727 perm/sec)   p_kst 1.352201e-04   p_cons 3.948075e-01   p_joint 4.899371e-04

Joint ci ratio: 9.916060e-02	ci left: 4.653705e-04	ci right 5.142271e-04	k: 1561	n:3190000
Cons ci ratio: 2.717566e-03	ci left: 3.942319e-01	ci right 3.953050e-01	k: 1259311	n:3190000
KS ci ratio: 1.888070e-01	ci left: 1.223558e-04	ci right 1.481585e-04	k: 430	n:3190000
RGS14   3190000 perm   4399 sec   (725 perm/sec)   p_kst 1.347962e-04   p_cons 3.947683e-01   p_joint 4.893417e-04

Joint ci ratio: 9.900227e-02	ci left: 4.654400e-04	ci right 5.142213e-04	k: 1566	n:3200000
Cons ci ratio: 2.713360e-03	ci left: 3.942250e-01	ci right 3.952964e-01	k: 1263234	n:3200000
KS ci ratio: 1.883704e-01	ci left: 1.225689e-04	ci right 1.483499e-04	k: 432	n:3200000
RGS14   3200000 perm   4425 sec   (723 perm/sec)   p_kst 1.350000e-04   p_cons 3.947606e-01   p_joint 4.893750e-04

Joint ci ratio: 9.887616e-02	ci left: 4.652053e-04	ci right 5.138963e-04	k: 1570	n:3210000
Cons ci ratio: 2.709188e-03	ci left: 3.942157e-01	ci right 3.952854e-01	k: 1267149	n:3210000
KS ci ratio: 1.881533e-01	ci left: 1.224839e-04	ci right 1.482140e-04	k: 433	n:3210000
RGS14   3210000 perm   4451 sec   (721 perm/sec)   p_kst 1.348910e-04   p_cons 3.947505e-01   p_joint 4.890966e-04

Joint ci ratio: 9.871919e-02	ci left: 4.652750e-04	ci right 5.138915e-04	k: 1575	n:3220000
Cons ci ratio: 2.704951e-03	ci left: 3.942213e-01	ci right 3.952894e-01	k: 1271112	n:3220000
KS ci ratio: 1.875063e-01	ci left: 1.229914e-04	ci right 1.487291e-04	k: 436	n:3220000
RGS14   3220000 perm   4477 sec   (719 perm/sec)   p_kst 1.354037e-04   p_cons 3.947553e-01   p_joint 4.891304e-04

Joint ci ratio: 9.853179e-02	ci left: 4.656463e-04	ci right 5.142039e-04	k: 1581	n:3230000
Cons ci ratio: 2.700760e-03	ci left: 3.942223e-01	ci right 3.952887e-01	k: 1275060	n:3230000
KS ci ratio: 1.872921e-01	ci left: 1.229057e-04	ci right 1.485928e-04	k: 437	n:3230000
RGS14   3230000 perm   4503 sec   (717 perm/sec)   p_kst 1.352941e-04   p_cons 3.947554e-01   p_joint 4.894737e-04

Joint ci ratio: 9.843853e-02	ci left: 4.651122e-04	ci right 5.135656e-04	k: 1584	n:3240000
Cons ci ratio: 2.696687e-03	ci left: 3.942057e-01	ci right 3.952704e-01	k: 1278951	n:3240000
KS ci ratio: 1.866539e-01	ci left: 1.234090e-04	ci right 1.491033e-04	k: 440	n:3240000
RGS14   3240000 perm   4530 sec   (715 perm/sec)   p_kst 1.358025e-04   p_cons 3.947380e-01   p_joint 4.888889e-04

Joint ci ratio: 9.828363e-02	ci left: 4.651817e-04	ci right 5.135617e-04	k: 1589	n:3250000
Cons ci ratio: 2.692499e-03	ci left: 3.942128e-01	ci right 3.952760e-01	k: 1282919	n:3250000
KS ci ratio: 1.860222e-01	ci left: 1.239093e-04	ci right 1.496106e-04	k: 443	n:3250000
RGS14   3250000 perm   4559 sec   (713 perm/sec)   p_kst 1.363077e-04   p_cons 3.947443e-01   p_joint 4.889231e-04

Joint ci ratio: 9.809869e-02	ci left: 4.655501e-04	ci right 5.138720e-04	k: 1595	n:3260000
Cons ci ratio: 2.688397e-03	ci left: 3.942083e-01	ci right 3.952698e-01	k: 1286849	n:3260000
KS ci ratio: 1.858131e-01	ci left: 1.238217e-04	ci right 1.494727e-04	k: 444	n:3260000
RGS14   3260000 perm   4598 sec   (709 perm/sec)   p_kst 1.361963e-04   p_cons 3.947390e-01   p_joint 4.892638e-04

Joint ci ratio: 9.803733e-02	ci left: 4.647230e-04	ci right 5.129271e-04	k: 1597	n:3270000
Cons ci ratio: 2.684330e-03	ci left: 3.942007e-01	ci right 3.952606e-01	k: 1290769	n:3270000
KS ci ratio: 1.856047e-01	ci left: 1.237346e-04	ci right 1.493356e-04	k: 445	n:3270000
RGS14   3270000 perm   4639 sec   (705 perm/sec)   p_kst 1.360856e-04   p_cons 3.947306e-01   p_joint 4.883792e-04

Joint ci ratio: 9.794546e-02	ci left: 4.641984e-04	ci right 5.123004e-04	k: 1600	n:3280000
Cons ci ratio: 2.680271e-03	ci left: 3.941951e-01	ci right 3.952533e-01	k: 1294695	n:3280000
KS ci ratio: 1.856047e-01	ci left: 1.233573e-04	ci right 1.488804e-04	k: 445	n:3280000
RGS14   3280000 perm   4666 sec   (703 perm/sec)   p_kst 1.356707e-04   p_cons 3.947241e-01   p_joint 4.878049e-04

Joint ci ratio: 9.782335e-02	ci left: 4.639735e-04	ci right 5.119888e-04	k: 1604	n:3290000
Cons ci ratio: 2.676318e-03	ci left: 3.941739e-01	ci right 3.952305e-01	k: 1298570	n:3290000
KS ci ratio: 1.851900e-01	ci left: 1.235621e-04	ci right 1.490639e-04	k: 447	n:3290000
RGS14   3290000 perm   4692 sec   (701 perm/sec)   p_kst 1.358663e-04   p_cons 3.947021e-01   p_joint 4.875380e-04

Joint ci ratio: 9.767133e-02	ci left: 4.640456e-04	ci right 5.119895e-04	k: 1609	n:3300000
Cons ci ratio: 2.672184e-03	ci left: 3.941883e-01	ci right 3.952434e-01	k: 1302562	n:3300000
KS ci ratio: 1.847779e-01	ci left: 1.237657e-04	ci right 1.492463e-04	k: 449	n:3300000
RGS14   3300000 perm   4718 sec   (699 perm/sec)   p_kst 1.360606e-04   p_cons 3.947158e-01   p_joint 4.875758e-04

Joint ci ratio: 9.752002e-02	ci left: 4.641173e-04	ci right 5.119901e-04	k: 1614	n:3310000
Cons ci ratio: 2.668163e-03	ci left: 3.941858e-01	ci right 3.952392e-01	k: 1306498	n:3310000
KS ci ratio: 1.841650e-01	ci left: 1.242562e-04	ci right 1.497435e-04	k: 452	n:3310000
RGS14   3310000 perm   4745 sec   (698 perm/sec)   p_kst 1.365559e-04   p_cons 3.947124e-01   p_joint 4.876133e-04

Joint ci ratio: 9.730933e-02	ci left: 4.647765e-04	ci right 5.126078e-04	k: 1621	n:3320000
Cons ci ratio: 2.664085e-03	ci left: 3.941968e-01	ci right 3.952486e-01	k: 1310479	n:3320000
KS ci ratio: 1.839621e-01	ci left: 1.241693e-04	ci right 1.496076e-04	k: 453	n:3320000
RGS14   3320000 perm   4772 sec   (696 perm/sec)   p_kst 1.364458e-04   p_cons 3.947226e-01   p_joint 4.882530e-04

Joint ci ratio: 9.704041e-02	ci left: 4.660178e-04	ci right 5.138368e-04	k: 1630	n:3330000
Cons ci ratio: 2.660216e-03	ci left: 3.941735e-01	ci right 3.952237e-01	k: 1314346	n:3330000
KS ci ratio: 1.835582e-01	ci left: 1.243694e-04	ci right 1.497865e-04	k: 455	n:3330000
RGS14   3330000 perm   4798 sec   (694 perm/sec)   p_kst 1.366366e-04   p_cons 3.946985e-01   p_joint 4.894895e-04

Joint ci ratio: 9.689201e-02	ci left: 4.660832e-04	ci right 5.138316e-04	k: 1635	n:3340000
Cons ci ratio: 2.656270e-03	ci left: 3.941671e-01	ci right 3.952158e-01	k: 1318269	n:3340000
KS ci ratio: 1.833573e-01	ci left: 1.242827e-04	ci right 1.496512e-04	k: 456	n:3340000
RGS14   3340000 perm   4826 sec   (692 perm/sec)   p_kst 1.365269e-04   p_cons 3.946913e-01   p_joint 4.895210e-04

Joint ci ratio: 9.680332e-02	ci left: 4.655658e-04	ci right 5.132150e-04	k: 1638	n:3350000
Cons ci ratio: 2.652347e-03	ci left: 3.941598e-01	ci right 3.952069e-01	k: 1322189	n:3350000
KS ci ratio: 1.829574e-01	ci left: 1.244813e-04	ci right 1.498288e-04	k: 458	n:3350000
RGS14   3350000 perm   4853 sec   (690 perm/sec)   p_kst 1.367164e-04   p_cons 3.946833e-01   p_joint 4.889552e-04

Joint ci ratio: 9.674435e-02	ci left: 4.647610e-04	ci right 5.122972e-04	k: 1640	n:3360000
Cons ci ratio: 2.648359e-03	ci left: 3.941675e-01	ci right 3.952130e-01	k: 1326159	n:3360000
KS ci ratio: 1.829574e-01	ci left: 1.241109e-04	ci right 1.493829e-04	k: 458	n:3360000
RGS14   3360000 perm   4880 sec   (689 perm/sec)   p_kst 1.363095e-04   p_cons 3.946902e-01   p_joint 4.880952e-04

Joint ci ratio: 9.665607e-02	ci left: 4.642505e-04	ci right 5.116888e-04	k: 1643	n:3370000
Cons ci ratio: 2.644450e-03	ci left: 3.941641e-01	ci right 3.952081e-01	k: 1330092	n:3370000
KS ci ratio: 1.827584e-01	ci left: 1.240257e-04	ci right 1.492499e-04	k: 459	n:3370000
RGS14   3370000 perm   4907 sec   (687 perm/sec)   p_kst 1.362018e-04   p_cons 3.946861e-01   p_joint 4.875371e-04

Joint ci ratio: 9.639252e-02	ci left: 4.654755e-04	ci right 5.129019e-04	k: 1652	n:3380000
Cons ci ratio: 2.640502e-03	ci left: 3.941709e-01	ci right 3.952133e-01	k: 1334059	n:3380000
KS ci ratio: 1.819689e-01	ci left: 1.247882e-04	ci right 1.500457e-04	k: 463	n:3380000
RGS14   3380000 perm   4935 sec   (685 perm/sec)   p_kst 1.369822e-04   p_cons 3.946920e-01   p_joint 4.887574e-04

Joint ci ratio: 9.624707e-02	ci left: 4.655418e-04	ci right 5.128994e-04	k: 1657	n:3390000
Cons ci ratio: 2.636502e-03	ci left: 3.941902e-01	ci right 3.952312e-01	k: 1338069	n:3390000
KS ci ratio: 1.819689e-01	ci left: 1.244201e-04	ci right 1.496031e-04	k: 463	n:3390000
RGS14   3390000 perm   4963 sec   (683 perm/sec)   p_kst 1.365782e-04   p_cons 3.947106e-01   p_joint 4.887906e-04

Joint ci ratio: 9.607337e-02	ci left: 4.658948e-04	ci right 5.131980e-04	k: 1663	n:3400000
Cons ci ratio: 2.632656e-03	ci left: 3.941848e-01	ci right 3.952242e-01	k: 1341995	n:3400000
KS ci ratio: 1.819690e-01	ci left: 1.240541e-04	ci right 1.491631e-04	k: 463	n:3400000
RGS14   3400000 perm   4991 sec   (681 perm/sec)   p_kst 1.361765e-04   p_cons 3.947044e-01   p_joint 4.891176e-04

Joint ci ratio: 9.581455e-02	ci left: 4.671045e-04	ci right 5.143956e-04	k: 1672	n:3410000
Cons ci ratio: 2.628850e-03	ci left: 3.941753e-01	ci right 3.952132e-01	k: 1345907	n:3410000
KS ci ratio: 1.806116e-01	ci left: 1.256500e-04	ci right 1.508715e-04	k: 470	n:3410000
RGS14   3410000 perm   5018 sec   (679 perm/sec)   p_kst 1.378299e-04   p_cons 3.946941e-01   p_joint 4.903226e-04

Joint ci ratio: 9.567169e-02	ci left: 4.671657e-04	ci right 5.143885e-04	k: 1677	n:3420000
Cons ci ratio: 2.624978e-03	ci left: 3.941807e-01	ci right 3.952171e-01	k: 1349870	n:3420000
KS ci ratio: 1.802293e-01	ci left: 1.258410e-04	ci right 1.510416e-04	k: 472	n:3420000
RGS14   3420000 perm   5047 sec   (678 perm/sec)   p_kst 1.380117e-04   p_cons 3.946988e-01   p_joint 4.903509e-04

Joint ci ratio: 9.552947e-02	ci left: 4.672266e-04	ci right 5.143814e-04	k: 1682	n:3430000
Cons ci ratio: 2.621305e-03	ci left: 3.941529e-01	ci right 3.951878e-01	k: 1353719	n:3430000
KS ci ratio: 1.800391e-01	ci left: 1.257525e-04	ci right 1.509059e-04	k: 473	n:3430000
RGS14   3430000 perm   5074 sec   (676 perm/sec)   p_kst 1.379009e-04   p_cons 3.946703e-01   p_joint 4.903790e-04

Joint ci ratio: 9.533139e-02	ci left: 4.678547e-04	ci right 5.149695e-04	k: 1689	n:3440000
Cons ci ratio: 2.617396e-03	ci left: 3.941712e-01	ci right 3.952045e-01	k: 1357726	n:3440000
KS ci ratio: 1.798495e-01	ci left: 1.256645e-04	ci right 1.507710e-04	k: 474	n:3440000
RGS14   3440000 perm   5102 sec   (674 perm/sec)   p_kst 1.377907e-04   p_cons 3.946878e-01   p_joint 4.909884e-04

Joint ci ratio: 9.516260e-02	ci left: 4.681963e-04	ci right 5.152574e-04	k: 1695	n:3450000
Cons ci ratio: 2.613655e-03	ci left: 3.941619e-01	ci right 3.951937e-01	k: 1361638	n:3450000
KS ci ratio: 1.794720e-01	ci left: 1.258539e-04	ci right 1.509397e-04	k: 476	n:3450000
RGS14   3450000 perm   5129 sec   (673 perm/sec)   p_kst 1.379710e-04   p_cons 3.946777e-01   p_joint 4.913043e-04

Joint ci ratio: 9.505059e-02	ci left: 4.679717e-04	ci right 5.149517e-04	k: 1699	n:3460000
Cons ci ratio: 2.609819e-03	ci left: 3.941731e-01	ci right 3.952034e-01	k: 1365621	n:3460000
KS ci ratio: 1.789103e-01	ci left: 1.263184e-04	ci right 1.514094e-04	k: 479	n:3460000
RGS14   3460000 perm   5156 sec   (671 perm/sec)   p_kst 1.384393e-04   p_cons 3.946882e-01   p_joint 4.910405e-04

Joint ci ratio: 9.491112e-02	ci left: 4.680298e-04	ci right 5.149429e-04	k: 1704	n:3470000
Cons ci ratio: 2.606044e-03	ci left: 3.941759e-01	ci right 3.952047e-01	k: 1369575	n:3470000
KS ci ratio: 1.787242e-01	ci left: 1.262296e-04	ci right 1.512741e-04	k: 480	n:3470000
RGS14   3470000 perm   5184 sec   (669 perm/sec)   p_kst 1.383285e-04   p_cons 3.946902e-01   p_joint 4.910663e-04

Joint ci ratio: 9.479999e-02	ci left: 4.678070e-04	ci right 5.146398e-04	k: 1708	n:3480000
Cons ci ratio: 2.602272e-03	ci left: 3.941812e-01	ci right 3.952086e-01	k: 1373538	n:3480000
KS ci ratio: 1.783538e-01	ci left: 1.264159e-04	ci right 1.514398e-04	k: 482	n:3480000
RGS14   3480000 perm   5212 sec   (668 perm/sec)   p_kst 1.385057e-04   p_cons 3.946948e-01   p_joint 4.908046e-04

Joint ci ratio: 9.468926e-02	ci left: 4.675856e-04	ci right 5.143385e-04	k: 1712	n:3490000
Cons ci ratio: 2.598452e-03	ci left: 3.941983e-01	ci right 3.952242e-01	k: 1377542	n:3490000
KS ci ratio: 1.783538e-01	ci left: 1.260537e-04	ci right 1.510059e-04	k: 482	n:3490000
RGS14   3490000 perm   5240 sec   (666 perm/sec)   p_kst 1.381089e-04   p_cons 3.947112e-01   p_joint 4.905444e-04

Joint ci ratio: 9.460648e-02	ci left: 4.670865e-04	ci right 5.137464e-04	k: 1715	n:3500000
Cons ci ratio: 2.594776e-03	ci left: 3.941919e-01	ci right 3.952163e-01	k: 1381464	n:3500000
KS ci ratio: 1.783538e-01	ci left: 1.256935e-04	ci right 1.505744e-04	k: 482	n:3500000
RGS14   3500000 perm   5268 sec   (664 perm/sec)   p_kst 1.377143e-04   p_cons 3.947040e-01   p_joint 4.900000e-04

Joint ci ratio: 9.455143e-02	ci left: 4.663121e-04	ci right 5.128660e-04	k: 1717	n:3510000
Cons ci ratio: 2.591068e-03	ci left: 3.941943e-01	ci right 3.952173e-01	k: 1385417	n:3510000
KS ci ratio: 1.783539e-01	ci left: 1.253354e-04	ci right 1.501454e-04	k: 482	n:3510000
RGS14   3510000 perm   5297 sec   (663 perm/sec)   p_kst 1.373219e-04   p_cons 3.947057e-01   p_joint 4.891738e-04

Joint ci ratio: 9.430469e-02	ci left: 4.674838e-04	ci right 5.140262e-04	k: 1726	n:3520000
Cons ci ratio: 2.587415e-03	ci left: 3.941896e-01	ci right 3.952111e-01	k: 1389345	n:3520000
KS ci ratio: 1.783539e-01	ci left: 1.249794e-04	ci right 1.497189e-04	k: 482	n:3520000
RGS14   3520000 perm   5330 sec   (660 perm/sec)   p_kst 1.369318e-04   p_cons 3.947003e-01   p_joint 4.903409e-04

Joint ci ratio: 9.419568e-02	ci left: 4.672659e-04	ci right 5.137299e-04	k: 1730	n:3530000
Cons ci ratio: 2.583742e-03	ci left: 3.941912e-01	ci right 3.952113e-01	k: 1393295	n:3530000
KS ci ratio: 1.779858e-01	ci left: 1.251666e-04	ci right 1.498866e-04	k: 484	n:3530000
RGS14   3530000 perm   5366 sec   (658 perm/sec)   p_kst 1.371105e-04   p_cons 3.947011e-01   p_joint 4.900850e-04

Joint ci ratio: 9.403283e-02	ci left: 4.676009e-04	ci right 5.140134e-04	k: 1736	n:3540000
Cons ci ratio: 2.580170e-03	ci left: 3.941772e-01	ci right 3.951958e-01	k: 1397190	n:3540000
KS ci ratio: 1.776199e-01	ci left: 1.253529e-04	ci right 1.500532e-04	k: 486	n:3540000
RGS14   3540000 perm   5395 sec   (656 perm/sec)   p_kst 1.372881e-04   p_cons 3.946864e-01   p_joint 4.903955e-04

Joint ci ratio: 9.403290e-02	ci left: 4.662837e-04	ci right 5.125655e-04	k: 1736	n:3550000
Cons ci ratio: 2.576428e-03	ci left: 3.941974e-01	ci right 3.952146e-01	k: 1401206	n:3550000
KS ci ratio: 1.776199e-01	ci left: 1.249998e-04	ci right 1.496306e-04	k: 486	n:3550000
RGS14   3550000 perm   5424 sec   (655 perm/sec)   p_kst 1.369014e-04   p_cons 3.947059e-01   p_joint 4.890141e-04

Joint ci ratio: 9.395183e-02	ci left: 4.657968e-04	ci right 5.119882e-04	k: 1739	n:3560000
Cons ci ratio: 2.572791e-03	ci left: 3.942012e-01	ci right 3.952170e-01	k: 1405164	n:3560000
KS ci ratio: 1.776200e-01	ci left: 1.246486e-04	ci right 1.492102e-04	k: 486	n:3560000
RGS14   3560000 perm   5452 sec   (653 perm/sec)   p_kst 1.365169e-04   p_cons 3.947090e-01   p_joint 4.884831e-04

Joint ci ratio: 9.384403e-02	ci left: 4.655862e-04	ci right 5.117009e-04	k: 1743	n:3570000
Cons ci ratio: 2.569277e-03	ci left: 3.941848e-01	ci right 3.951991e-01	k: 1409050	n:3570000
KS ci ratio: 1.770754e-01	ci left: 1.251025e-04	ci right 1.496699e-04	k: 489	n:3570000
RGS14   3570000 perm   5482 sec   (651 perm/sec)   p_kst 1.369748e-04   p_cons 3.946919e-01   p_joint 4.882353e-04

Joint ci ratio: 9.379031e-02	ci left: 4.648312e-04	ci right 5.108433e-04	k: 1745	n:3580000
Cons ci ratio: 2.565572e-03	ci left: 3.942068e-01	ci right 3.952197e-01	k: 1413073	n:3580000
KS ci ratio: 1.768950e-01	ci left: 1.250200e-04	ci right 1.495435e-04	k: 490	n:3580000
RGS14   3580000 perm   5511 sec   (650 perm/sec)   p_kst 1.368715e-04   p_cons 3.947131e-01   p_joint 4.874302e-04

Joint ci ratio: 9.354946e-02	ci left: 4.659847e-04	ci right 5.119860e-04	k: 1754	n:3590000
Cons ci ratio: 2.562005e-03	ci left: 3.942057e-01	ci right 3.952173e-01	k: 1417014	n:3590000
KS ci ratio: 1.760010e-01	ci left: 1.260030e-04	ci right 1.505812e-04	k: 495	n:3590000
RGS14   3590000 perm   5539 sec   (648 perm/sec)   p_kst 1.378830e-04   p_cons 3.947114e-01   p_joint 4.885794e-04

Joint ci ratio: 9.341648e-02	ci left: 4.660467e-04	ci right 5.119852e-04	k: 1759	n:3600000
Cons ci ratio: 2.558559e-03	ci left: 3.941850e-01	ci right 3.951951e-01	k: 1420884	n:3600000
KS ci ratio: 1.758239e-01	ci left: 1.259186e-04	ci right 1.504529e-04	k: 496	n:3600000
RGS14   3600000 perm   5568 sec   (647 perm/sec)   p_kst 1.377778e-04   p_cons 3.946900e-01   p_joint 4.886111e-04

Joint ci ratio: 9.323123e-02	ci left: 4.666495e-04	ci right 5.125512e-04	k: 1766	n:3610000
Cons ci ratio: 2.554866e-03	ci left: 3.942132e-01	ci right 3.952219e-01	k: 1424930	n:3610000
KS ci ratio: 1.752956e-01	ci left: 1.263643e-04	ci right 1.509036e-04	k: 499	n:3610000
RGS14   3610000 perm   5598 sec   (645 perm/sec)   p_kst 1.382271e-04   p_cons 3.947175e-01   p_joint 4.891967e-04

Joint ci ratio: 9.307333e-02	ci left: 4.669793e-04	ci right 5.128314e-04	k: 1772	n:3620000
Cons ci ratio: 2.551437e-03	ci left: 3.941948e-01	ci right 3.952021e-01	k: 1428808	n:3620000
KS ci ratio: 1.749460e-01	ci left: 1.265435e-04	ci right 1.510634e-04	k: 501	n:3620000
RGS14   3620000 perm   5627 sec   (643 perm/sec)   p_kst 1.383978e-04   p_cons 3.946983e-01   p_joint 4.895028e-04

Joint ci ratio: 9.286402e-02	ci left: 4.678455e-04	ci right 5.136737e-04	k: 1780	n:3630000
Cons ci ratio: 2.548020e-03	ci left: 3.941767e-01	ci right 3.951827e-01	k: 1432687	n:3630000
KS ci ratio: 1.744256e-01	ci left: 1.269852e-04	ci right 1.515098e-04	k: 504	n:3630000
RGS14   3630000 perm   5657 sec   (642 perm/sec)   p_kst 1.388430e-04   p_cons 3.946796e-01   p_joint 4.903581e-04

Joint ci ratio: 9.270798e-02	ci left: 4.681703e-04	ci right 5.139491e-04	k: 1786	n:3640000
Cons ci ratio: 2.544513e-03	ci left: 3.941783e-01	ci right 3.951828e-01	k: 1436637	n:3640000
KS ci ratio: 1.742531e-01	ci left: 1.268991e-04	ci right 1.513803e-04	k: 505	n:3640000
RGS14   3640000 perm   5686 sec   (640 perm/sec)   p_kst 1.387363e-04   p_cons 3.946805e-01   p_joint 4.906593e-04

Joint ci ratio: 9.263028e-02	ci left: 4.676905e-04	ci right 5.133820e-04	k: 1789	n:3650000
Cons ci ratio: 2.541004e-03	ci left: 3.941829e-01	ci right 3.951860e-01	k: 1440598	n:3650000
KS ci ratio: 1.742532e-01	ci left: 1.265514e-04	ci right 1.509655e-04	k: 505	n:3650000
RGS14   3650000 perm   5716 sec   (639 perm/sec)   p_kst 1.383562e-04   p_cons 3.946844e-01   p_joint 4.901370e-04

Joint ci ratio: 9.244966e-02	ci left: 4.682810e-04	ci right 5.139361e-04	k: 1796	n:3660000
Cons ci ratio: 2.537519e-03	ci left: 3.941858e-01	ci right 3.951876e-01	k: 1444553	n:3660000
KS ci ratio: 1.739098e-01	ci left: 1.267283e-04	ci right 1.511233e-04	k: 507	n:3660000
RGS14   3660000 perm   5745 sec   (637 perm/sec)   p_kst 1.385246e-04   p_cons 3.946866e-01   p_joint 4.907104e-04

Joint ci ratio: 9.237261e-02	ci left: 4.678036e-04	ci right 5.133721e-04	k: 1799	n:3670000
Cons ci ratio: 2.534102e-03	ci left: 3.941784e-01	ci right 3.951788e-01	k: 1448470	n:3670000
KS ci ratio: 1.737389e-01	ci left: 1.266436e-04	ci right 1.509958e-04	k: 508	n:3670000
RGS14   3670000 perm   5776 sec   (635 perm/sec)   p_kst 1.384196e-04   p_cons 3.946785e-01   p_joint 4.901907e-04

Joint ci ratio: 9.229576e-02	ci left: 4.673287e-04	ci right 5.128111e-04	k: 1802	n:3680000
Cons ci ratio: 2.530651e-03	ci left: 3.941802e-01	ci right 3.951792e-01	k: 1452421	n:3680000
KS ci ratio: 1.735685e-01	ci left: 1.265594e-04	ci right 1.508691e-04	k: 509	n:3680000
RGS14   3680000 perm   5806 sec   (634 perm/sec)   p_kst 1.383152e-04   p_cons 3.946796e-01   p_joint 4.896739e-04

Joint ci ratio: 9.216804e-02	ci left: 4.673860e-04	ci right 5.128076e-04	k: 1807	n:3690000
Cons ci ratio: 2.527285e-03	ci left: 3.941684e-01	ci right 3.951661e-01	k: 1456322	n:3690000
KS ci ratio: 1.730602e-01	ci left: 1.269941e-04	ci right 1.513084e-04	k: 512	n:3690000
RGS14   3690000 perm   5837 sec   (632 perm/sec)   p_kst 1.387534e-04   p_cons 3.946672e-01   p_joint 4.897019e-04

Joint ci ratio: 9.201548e-02	ci left: 4.677071e-04	ci right 5.130806e-04	k: 1813	n:3700000
Cons ci ratio: 2.523777e-03	ci left: 3.941862e-01	ci right 3.951826e-01	k: 1460332	n:3700000
KS ci ratio: 1.728918e-01	ci left: 1.269095e-04	ci right 1.511815e-04	k: 513	n:3700000
RGS14   3700000 perm   5868 sec   (631 perm/sec)   p_kst 1.386486e-04   p_cons 3.946843e-01   p_joint 4.900000e-04

Joint ci ratio: 9.186366e-02	ci left: 4.680265e-04	ci right 5.133520e-04	k: 1819	n:3710000
Cons ci ratio: 2.520380e-03	ci left: 3.941856e-01	ci right 3.951806e-01	k: 1464274	n:3710000
KS ci ratio: 1.723894e-01	ci left: 1.273411e-04	ci right 1.516175e-04	k: 516	n:3710000
RGS14   3710000 perm   5898 sec   (629 perm/sec)   p_kst 1.390836e-04   p_cons 3.946830e-01   p_joint 4.902965e-04

Joint ci ratio: 9.173774e-02	ci left: 4.680816e-04	ci right 5.133470e-04	k: 1824	n:3720000
Cons ci ratio: 2.517079e-03	ci left: 3.941694e-01	ci right 3.951630e-01	k: 1468158	n:3720000
KS ci ratio: 1.720569e-01	ci left: 1.275132e-04	ci right 1.517707e-04	k: 518	n:3720000
RGS14   3720000 perm   5928 sec   (628 perm/sec)   p_kst 1.392473e-04   p_cons 3.946661e-01   p_joint 4.903226e-04

Joint ci ratio: 9.158729e-02	ci left: 4.683984e-04	ci right 5.136162e-04	k: 1830	n:3730000
Cons ci ratio: 2.513567e-03	ci left: 3.941959e-01	ci right 3.951882e-01	k: 1472201	n:3730000
KS ci ratio: 1.720569e-01	ci left: 1.271714e-04	ci right 1.513638e-04	k: 518	n:3730000
RGS14   3730000 perm   5958 sec   (626 perm/sec)   p_kst 1.388740e-04   p_cons 3.946920e-01   p_joint 4.906166e-04

Joint ci ratio: 9.158735e-02	ci left: 4.671460e-04	ci right 5.122429e-04	k: 1830	n:3740000
Cons ci ratio: 2.510217e-03	ci left: 3.941942e-01	ci right 3.951852e-01	k: 1476139	n:3740000
KS ci ratio: 1.720569e-01	ci left: 1.268314e-04	ci right 1.509591e-04	k: 518	n:3740000
RGS14   3740000 perm   5989 sec   (624 perm/sec)   p_kst 1.385027e-04   p_cons 3.946896e-01   p_joint 4.893048e-04

Joint ci ratio: 9.151244e-02	ci left: 4.666819e-04	ci right 5.116952e-04	k: 1833	n:3750000
Cons ci ratio: 2.506782e-03	ci left: 3.942111e-01	ci right 3.952008e-01	k: 1480147	n:3750000
KS ci ratio: 1.720570e-01	ci left: 1.264931e-04	ci right 1.505565e-04	k: 518	n:3750000
RGS14   3750000 perm   6019 sec   (623 perm/sec)   p_kst 1.381333e-04   p_cons 3.947059e-01   p_joint 4.888000e-04

Joint ci ratio: 9.131346e-02	ci left: 4.675198e-04	ci right 5.125106e-04	k: 1841	n:3760000
Cons ci ratio: 2.503578e-03	ci left: 3.941868e-01	ci right 3.951751e-01	k: 1484000	n:3760000
KS ci ratio: 1.715618e-01	ci left: 1.269203e-04	ci right 1.509883e-04	k: 521	n:3760000
RGS14   3760000 perm   6050 sec   (622 perm/sec)   p_kst 1.385638e-04   p_cons 3.946809e-01   p_joint 4.896277e-04

Joint ci ratio: 9.121448e-02	ci left: 4.673165e-04	ci right 5.122364e-04	k: 1845	n:3770000
Cons ci ratio: 2.500329e-03	ci left: 3.941734e-01	ci right 3.951604e-01	k: 1487894	n:3770000
KS ci ratio: 1.710709e-01	ci left: 1.273453e-04	ci right 1.514176e-04	k: 524	n:3770000
RGS14   3770000 perm   6080 sec   (620 perm/sec)   p_kst 1.389920e-04   p_cons 3.946668e-01   p_joint 4.893899e-04

Joint ci ratio: 9.109120e-02	ci left: 4.673728e-04	ci right 5.122341e-04	k: 1850	n:3780000
Cons ci ratio: 2.496991e-03	ci left: 3.941794e-01	ci right 3.951652e-01	k: 1491861	n:3780000
KS ci ratio: 1.709082e-01	ci left: 1.272616e-04	ci right 1.512929e-04	k: 525	n:3780000
RGS14   3780000 perm   6111 sec   (619 perm/sec)   p_kst 1.388889e-04   p_cons 3.946722e-01   p_joint 4.894180e-04

Joint ci ratio: 9.094391e-02	ci left: 4.676867e-04	ci right 5.125017e-04	k: 1856	n:3790000
Cons ci ratio: 2.493799e-03	ci left: 3.941601e-01	ci right 3.951445e-01	k: 1495732	n:3790000
KS ci ratio: 1.705842e-01	ci left: 1.274310e-04	ci right 1.514439e-04	k: 527	n:3790000
RGS14   3790000 perm   6141 sec   (617 perm/sec)   p_kst 1.390501e-04   p_cons 3.946522e-01   p_joint 4.897098e-04

Joint ci ratio: 9.084613e-02	ci left: 4.674846e-04	ci right 5.122296e-04	k: 1860	n:3800000
Cons ci ratio: 2.490555e-03	ci left: 3.941533e-01	ci right 3.951364e-01	k: 1499650	n:3800000
KS ci ratio: 1.702620e-01	ci left: 1.275995e-04	ci right 1.515941e-04	k: 529	n:3800000
RGS14   3800000 perm   6172 sec   (616 perm/sec)   p_kst 1.392105e-04   p_cons 3.946447e-01   p_joint 4.894737e-04

Joint ci ratio: 9.070003e-02	ci left: 4.677967e-04	ci right 5.124957e-04	k: 1866	n:3810000
Cons ci ratio: 2.487320e-03	ci left: 3.941470e-01	ci right 3.951288e-01	k: 1503570	n:3810000
KS ci ratio: 1.701016e-01	ci left: 1.275159e-04	ci right 1.514699e-04	k: 530	n:3810000
RGS14   3810000 perm   6204 sec   (614 perm/sec)   p_kst 1.391076e-04   p_cons 3.946378e-01   p_joint 4.897638e-04

Joint ci ratio: 9.055462e-02	ci left: 4.681072e-04	ci right 5.127604e-04	k: 1872	n:3820000
Cons ci ratio: 2.484144e-03	ci left: 3.941318e-01	ci right 3.951123e-01	k: 1507456	n:3820000
KS ci ratio: 1.696231e-01	ci left: 1.279340e-04	ci right 1.518921e-04	k: 533	n:3820000
RGS14   3820000 perm   6234 sec   (613 perm/sec)   p_kst 1.395288e-04   p_cons 3.946220e-01   p_joint 4.900524e-04

Joint ci ratio: 9.045809e-02	ci left: 4.679057e-04	ci right 5.124896e-04	k: 1876	n:3830000
Cons ci ratio: 2.481046e-03	ci left: 3.941042e-01	ci right 3.950834e-01	k: 1511294	n:3830000
KS ci ratio: 1.696231e-01	ci left: 1.276000e-04	ci right 1.514955e-04	k: 533	n:3830000
RGS14   3830000 perm   6265 sec   (611 perm/sec)   p_kst 1.391645e-04   p_cons 3.945937e-01   p_joint 4.898172e-04

Joint ci ratio: 9.026590e-02	ci left: 4.687235e-04	ci right 5.132854e-04	k: 1884	n:3840000
Cons ci ratio: 2.477715e-03	ci left: 3.941238e-01	ci right 3.951018e-01	k: 1515313	n:3840000
KS ci ratio: 1.696232e-01	ci left: 1.272677e-04	ci right 1.511010e-04	k: 533	n:3840000
RGS14   3840000 perm   6297 sec   (610 perm/sec)   p_kst 1.388021e-04   p_cons 3.946128e-01   p_joint 4.906250e-04

Joint ci ratio: 9.021808e-02	ci left: 4.680138e-04	ci right 5.124834e-04	k: 1886	n:3850000
Cons ci ratio: 2.474414e-03	ci left: 3.941400e-01	ci right 3.951167e-01	k: 1519319	n:3850000
KS ci ratio: 1.693064e-01	ci left: 1.274346e-04	ci right 1.512500e-04	k: 535	n:3850000
RGS14   3850000 perm   6329 sec   (608 perm/sec)   p_kst 1.389610e-04   p_cons 3.946283e-01   p_joint 4.898701e-04

Joint ci ratio: 9.009880e-02	ci left: 4.680674e-04	ci right 5.124802e-04	k: 1891	n:3860000
Cons ci ratio: 2.471174e-03	ci left: 3.941471e-01	ci right 3.951225e-01	k: 1523290	n:3860000
KS ci ratio: 1.688345e-01	ci left: 1.278488e-04	ci right 1.516682e-04	k: 538	n:3860000
RGS14   3860000 perm   6360 sec   (607 perm/sec)   p_kst 1.393782e-04   p_cons 3.946347e-01   p_joint 4.898964e-04

Joint ci ratio: 9.000371e-02	ci left: 4.678683e-04	ci right 5.122128e-04	k: 1895	n:3870000
Cons ci ratio: 2.468014e-03	ci left: 3.941409e-01	ci right 3.951151e-01	k: 1527210	n:3870000
KS ci ratio: 1.685222e-01	ci left: 1.280134e-04	ci right 1.518149e-04	k: 540	n:3870000
RGS14   3870000 perm   6390 sec   (606 perm/sec)   p_kst 1.395349e-04   p_cons 3.946279e-01   p_joint 4.896641e-04

Joint ci ratio: 8.983800e-02	ci left: 4.684260e-04	ci right 5.127374e-04	k: 1902	n:3880000
Cons ci ratio: 2.464953e-03	ci left: 3.941180e-01	ci right 3.950909e-01	k: 1531065	n:3880000
KS ci ratio: 1.682115e-01	ci left: 1.281772e-04	ci right 1.519608e-04	k: 542	n:3880000
RGS14   3880000 perm   6422 sec   (604 perm/sec)   p_kst 1.396907e-04   p_cons 3.946044e-01   p_joint 4.902062e-04

Joint ci ratio: 8.972021e-02	ci left: 4.684783e-04	ci right 5.127335e-04	k: 1907	n:3890000
Cons ci ratio: 2.461816e-03	ci left: 3.941122e-01	ci right 3.950839e-01	k: 1534986	n:3890000
KS ci ratio: 1.677487e-01	ci left: 1.285865e-04	ci right 1.523737e-04	k: 545	n:3890000
RGS14   3890000 perm   6453 sec   (603 perm/sec)   p_kst 1.401028e-04   p_cons 3.945979e-01   p_joint 4.902314e-04

Joint ci ratio: 8.962632e-02	ci left: 4.682797e-04	ci right 5.124674e-04	k: 1911	n:3900000
Cons ci ratio: 2.458766e-03	ci left: 3.940918e-01	ci right 3.950622e-01	k: 1538850	n:3900000
KS ci ratio: 1.677487e-01	ci left: 1.282568e-04	ci right 1.519830e-04	k: 545	n:3900000
RGS14   3900000 perm   6484 sec   (601 perm/sec)   p_kst 1.397436e-04   p_cons 3.945769e-01   p_joint 4.900000e-04

Joint ci ratio: 8.941608e-02	ci left: 4.693323e-04	ci right 5.135101e-04	k: 1920	n:3910000
Cons ci ratio: 2.455612e-03	ci left: 3.940940e-01	ci right 3.950632e-01	k: 1542802	n:3910000
KS ci ratio: 1.671376e-01	ci left: 1.289089e-04	ci right 1.526602e-04	k: 549	n:3910000
RGS14   3910000 perm   6516 sec   (600 perm/sec)   p_kst 1.404092e-04   p_cons 3.945785e-01   p_joint 4.910486e-04

Joint ci ratio: 8.925359e-02	ci left: 4.698809e-04	ci right 5.140257e-04	k: 1927	n:3920000
Cons ci ratio: 2.452531e-03	ci left: 3.940842e-01	ci right 3.950522e-01	k: 1546707	n:3920000
KS ci ratio: 1.666836e-01	ci left: 1.293134e-04	ci right 1.530680e-04	k: 552	n:3920000
RGS14   3920000 perm   6548 sec   (599 perm/sec)   p_kst 1.408163e-04   p_cons 3.945681e-01   p_joint 4.915816e-04

Joint ci ratio: 8.911502e-02	ci left: 4.701779e-04	ci right 5.142785e-04	k: 1933	n:3930000
Cons ci ratio: 2.449323e-03	ci left: 3.941015e-01	ci right 3.950682e-01	k: 1550718	n:3930000
KS ci ratio: 1.665331e-01	ci left: 1.292282e-04	ci right 1.529435e-04	k: 553	n:3930000
RGS14   3930000 perm   6579 sec   (597 perm/sec)   p_kst 1.407125e-04   p_cons 3.945847e-01   p_joint 4.918575e-04

Joint ci ratio: 8.909203e-02	ci left: 4.692327e-04	ci right 5.132327e-04	k: 1934	n:3940000
Cons ci ratio: 2.446192e-03	ci left: 3.941062e-01	ci right 3.950716e-01	k: 1554680	n:3940000
KS ci ratio: 1.665331e-01	ci left: 1.289002e-04	ci right 1.525554e-04	k: 553	n:3940000
RGS14   3940000 perm   6611 sec   (596 perm/sec)   p_kst 1.403553e-04   p_cons 3.945888e-01   p_joint 4.908629e-04

Joint ci ratio: 8.897715e-02	ci left: 4.692824e-04	ci right 5.132273e-04	k: 1939	n:3950000
Cons ci ratio: 2.443056e-03	ci left: 3.941142e-01	ci right 3.950784e-01	k: 1558655	n:3950000
KS ci ratio: 1.663830e-01	ci left: 1.288165e-04	ci right 1.524328e-04	k: 554	n:3950000
RGS14   3950000 perm   6642 sec   (595 perm/sec)   p_kst 1.402532e-04   p_cons 3.945962e-01   p_joint 4.908861e-04

Joint ci ratio: 8.879422e-02	ci left: 4.700727e-04	ci right 5.139964e-04	k: 1947	n:3960000
Cons ci ratio: 2.440026e-03	ci left: 3.941037e-01	ci right 3.950667e-01	k: 1562557	n:3960000
KS ci ratio: 1.660840e-01	ci left: 1.289752e-04	ci right 1.525740e-04	k: 556	n:3960000
RGS14   3960000 perm   6674 sec   (593 perm/sec)   p_kst 1.404040e-04   p_cons 3.945851e-01   p_joint 4.916667e-04

Joint ci ratio: 8.872595e-02	ci left: 4.696275e-04	ci right 5.134741e-04	k: 1950	n:3970000
Cons ci ratio: 2.436941e-03	ci left: 3.941063e-01	ci right 3.950681e-01	k: 1566511	n:3970000
KS ci ratio: 1.660841e-01	ci left: 1.286504e-04	ci right 1.521896e-04	k: 556	n:3970000
RGS14   3970000 perm   6706 sec   (592 perm/sec)   p_kst 1.400504e-04   p_cons 3.945872e-01   p_joint 4.911839e-04

Joint ci ratio: 8.861247e-02	ci left: 4.696760e-04	ci right 5.134681e-04	k: 1955	n:3980000
Cons ci ratio: 2.433832e-03	ci left: 3.941157e-01	ci right 3.950764e-01	k: 1570492	n:3980000
KS ci ratio: 1.659352e-01	ci left: 1.285679e-04	ci right 1.520689e-04	k: 557	n:3980000
RGS14   3980000 perm   6738 sec   (591 perm/sec)   p_kst 1.399497e-04   p_cons 3.945960e-01   p_joint 4.912060e-04

Joint ci ratio: 8.849943e-02	ci left: 4.697242e-04	ci right 5.134621e-04	k: 1960	n:3990000
Cons ci ratio: 2.430803e-03	ci left: 3.941119e-01	ci right 3.950713e-01	k: 1574420	n:3990000
KS ci ratio: 1.659352e-01	ci left: 1.282457e-04	ci right 1.516878e-04	k: 557	n:3990000
RGS14   3990000 perm   6770 sec   (589 perm/sec)   p_kst 1.395990e-04   p_cons 3.945915e-01   p_joint 4.912281e-04

Joint ci ratio: 8.843183e-02	ci left: 4.692833e-04	ci right 5.129451e-04	k: 1963	n:4000000
Cons ci ratio: 2.427820e-03	ci left: 3.941012e-01	ci right 3.950594e-01	k: 1578321	n:4000000
KS ci ratio: 1.659352e-01	ci left: 1.279251e-04	ci right 1.513086e-04	k: 557	n:4000000
RGS14   4000000 perm   6802 sec   (588 perm/sec)   p_kst 1.392500e-04   p_cons 3.945803e-01   p_joint 4.907500e-04

Joint ci ratio: 8.827464e-02	ci left: 4.698201e-04	ci right 5.134501e-04	k: 1970	n:4010000
Cons ci ratio: 2.424635e-03	ci left: 3.941325e-01	ci right 3.950896e-01	k: 1582390	n:4010000
KS ci ratio: 1.654909e-01	ci left: 1.283232e-04	ci right 1.517104e-04	k: 560	n:4010000
RGS14   4010000 perm   6833 sec   (587 perm/sec)   p_kst 1.396509e-04   p_cons 3.946110e-01   p_joint 4.912718e-04

Joint ci ratio: 8.818521e-02	ci left: 4.696245e-04	ci right 5.131898e-04	k: 1974	n:4020000
Cons ci ratio: 2.421597e-03	ci left: 3.941371e-01	ci right 3.950929e-01	k: 1586352	n:4020000
KS ci ratio: 1.653436e-01	ci left: 1.282424e-04	ci right 1.515921e-04	k: 561	n:4020000
RGS14   4020000 perm   6866 sec   (586 perm/sec)   p_kst 1.395522e-04   p_cons 3.946149e-01   p_joint 4.910448e-04

Joint ci ratio: 8.811833e-02	ci left: 4.691871e-04	ci right 5.126772e-04	k: 1977	n:4030000
Cons ci ratio: 2.418590e-03	ci left: 3.941379e-01	ci right 3.950925e-01	k: 1590299	n:4030000
KS ci ratio: 1.653437e-01	ci left: 1.279242e-04	ci right 1.512159e-04	k: 561	n:4030000
RGS14   4030000 perm   6897 sec   (584 perm/sec)   p_kst 1.392060e-04   p_cons 3.946151e-01   p_joint 4.905707e-04

Joint ci ratio: 8.802938e-02	ci left: 4.689941e-04	ci right 5.124201e-04	k: 1981	n:4040000
Cons ci ratio: 2.415571e-03	ci left: 3.941431e-01	ci right 3.950966e-01	k: 1594264	n:4040000
KS ci ratio: 1.649041e-01	ci left: 1.283194e-04	ci right 1.516148e-04	k: 564	n:4040000
RGS14   4040000 perm   6928 sec   (583 perm/sec)   p_kst 1.396040e-04   p_cons 3.946198e-01   p_joint 4.903465e-04

Joint ci ratio: 8.794069e-02	ci left: 4.688020e-04	ci right 5.121643e-04	k: 1985	n:4050000
Cons ci ratio: 2.412647e-03	ci left: 3.941318e-01	ci right 3.950841e-01	k: 1598162	n:4050000
KS ci ratio: 1.647584e-01	ci left: 1.282393e-04	ci right 1.514976e-04	k: 565	n:4050000
RGS14   4050000 perm   6960 sec   (582 perm/sec)   p_kst 1.395062e-04   p_cons 3.946079e-01   p_joint 4.901235e-04

Joint ci ratio: 8.785228e-02	ci left: 4.686109e-04	ci right 5.119097e-04	k: 1989	n:4060000
Cons ci ratio: 2.409667e-03	ci left: 3.941339e-01	ci right 3.950850e-01	k: 1602114	n:4060000
KS ci ratio: 1.646130e-01	ci left: 1.281596e-04	ci right 1.513809e-04	k: 566	n:4060000
RGS14   4060000 perm   6992 sec   (581 perm/sec)   p_kst 1.394089e-04   p_cons 3.946094e-01   p_joint 4.899015e-04

Joint ci ratio: 8.774211e-02	ci left: 4.686610e-04	ci right 5.119074e-04	k: 1994	n:4070000
Cons ci ratio: 2.406667e-03	ci left: 3.941421e-01	ci right 3.950920e-01	k: 1606091	n:4070000
KS ci ratio: 1.644680e-01	ci left: 1.280803e-04	ci right 1.512647e-04	k: 567	n:4070000
RGS14   4070000 perm   7026 sec   (579 perm/sec)   p_kst 1.393120e-04   p_cons 3.946170e-01   p_joint 4.899263e-04

Joint ci ratio: 8.765429e-02	ci left: 4.684712e-04	ci right 5.116546e-04	k: 1998	n:4080000
Cons ci ratio: 2.403659e-03	ci left: 3.941539e-01	ci right 3.951027e-01	k: 1610083	n:4080000
KS ci ratio: 1.640354e-01	ci left: 1.284715e-04	ci right 1.516595e-04	k: 570	n:4080000
RGS14   4080000 perm   7058 sec   (578 perm/sec)   p_kst 1.397059e-04   p_cons 3.946282e-01   p_joint 4.897059e-04

Joint ci ratio: 8.747939e-02	ci left: 4.692390e-04	ci right 5.124024e-04	k: 2006	n:4090000
Cons ci ratio: 2.400703e-03	ci left: 3.941576e-01	ci right 3.951052e-01	k: 1614042	n:4090000
KS ci ratio: 1.637489e-01	ci left: 1.286263e-04	ci right 1.517977e-04	k: 572	n:4090000
RGS14   4090000 perm   7091 sec   (577 perm/sec)   p_kst 1.398533e-04   p_cons 3.946313e-01   p_joint 4.904645e-04

Joint ci ratio: 8.747944e-02	ci left: 4.680945e-04	ci right 5.111526e-04	k: 2006	n:4100000
Cons ci ratio: 2.397760e-03	ci left: 3.941607e-01	ci right 3.951072e-01	k: 1617999	n:4100000
KS ci ratio: 1.637489e-01	ci left: 1.283126e-04	ci right 1.514275e-04	k: 572	n:4100000
RGS14   4100000 perm   7123 sec   (576 perm/sec)   p_kst 1.395122e-04   p_cons 3.946339e-01   p_joint 4.892683e-04

Joint ci ratio: 8.737068e-02	ci left: 4.681455e-04	ci right 5.111521e-04	k: 2011	n:4110000
Cons ci ratio: 2.394916e-03	ci left: 3.941464e-01	ci right 3.950917e-01	k: 1621884	n:4110000
KS ci ratio: 1.634638e-01	ci left: 1.284671e-04	ci right 1.515656e-04	k: 574	n:4110000
RGS14   4110000 perm   7156 sec   (574 perm/sec)   p_kst 1.396594e-04   p_cons 3.946190e-01   p_joint 4.892944e-04

Joint ci ratio: 8.717587e-02	ci left: 4.691461e-04	ci right 5.121436e-04	k: 2020	n:4120000
Cons ci ratio: 2.392041e-03	ci left: 3.941404e-01	ci right 3.950845e-01	k: 1625803	n:4120000
KS ci ratio: 1.630390e-01	ci left: 1.288537e-04	ci right 1.519556e-04	k: 577	n:4120000
RGS14   4120000 perm   7189 sec   (573 perm/sec)   p_kst 1.400485e-04   p_cons 3.946124e-01   p_joint 4.902913e-04

Joint ci ratio: 8.711126e-02	ci left: 4.687207e-04	ci right 5.116457e-04	k: 2023	n:4130000
Cons ci ratio: 2.389092e-03	ci left: 3.941513e-01	ci right 3.950943e-01	k: 1629792	n:4130000
KS ci ratio: 1.630391e-01	ci left: 1.285417e-04	ci right 1.515876e-04	k: 577	n:4130000
RGS14   4130000 perm   7222 sec   (572 perm/sec)   p_kst 1.397094e-04   p_cons 3.946228e-01   p_joint 4.898305e-04

Joint ci ratio: 8.704680e-02	ci left: 4.682973e-04	ci right 5.111503e-04	k: 2026	n:4140000
Cons ci ratio: 2.386237e-03	ci left: 3.941453e-01	ci right 3.950872e-01	k: 1633711	n:4140000
KS ci ratio: 1.627577e-01	ci left: 1.286946e-04	ci right 1.517242e-04	k: 579	n:4140000
RGS14   4140000 perm   7256 sec   (571 perm/sec)   p_kst 1.398551e-04   p_cons 3.946162e-01   p_joint 4.893720e-04

Joint ci ratio: 8.693964e-02	ci left: 4.683475e-04	ci right 5.111496e-04	k: 2031	n:4150000
Cons ci ratio: 2.383386e-03	ci left: 3.941408e-01	ci right 3.950815e-01	k: 1637636	n:4150000
KS ci ratio: 1.627577e-01	ci left: 1.283845e-04	ci right 1.513586e-04	k: 579	n:4150000
RGS14   4150000 perm   7289 sec   (569 perm/sec)   p_kst 1.395181e-04   p_cons 3.946111e-01   p_joint 4.893976e-04

Joint ci ratio: 8.679025e-02	ci left: 4.688678e-04	ci right 5.116401e-04	k: 2038	n:4160000
Cons ci ratio: 2.380409e-03	ci left: 3.941637e-01	ci right 3.951033e-01	k: 1641675	n:4160000
KS ci ratio: 1.626176e-01	ci left: 1.283065e-04	ci right 1.512450e-04	k: 580	n:4160000
RGS14   4160000 perm   7323 sec   (568 perm/sec)   p_kst 1.394231e-04   p_cons 3.946334e-01   p_joint 4.899038e-04

Joint ci ratio: 8.670525e-02	ci left: 4.686819e-04	ci right 5.113932e-04	k: 2042	n:4170000
Cons ci ratio: 2.377490e-03	ci left: 3.941769e-01	ci right 3.951154e-01	k: 1645674	n:4170000
KS ci ratio: 1.626177e-01	ci left: 1.279988e-04	ci right 1.508823e-04	k: 580	n:4170000
RGS14   4170000 perm   7356 sec   (567 perm/sec)   p_kst 1.390887e-04   p_cons 3.946460e-01   p_joint 4.896882e-04

Joint ci ratio: 8.659935e-02	ci left: 4.687309e-04	ci right 5.113919e-04	k: 2047	n:4180000
Cons ci ratio: 2.374683e-03	ci left: 3.941697e-01	ci right 3.951070e-01	k: 1649588	n:4180000
KS ci ratio: 1.626177e-01	ci left: 1.276926e-04	ci right 1.505213e-04	k: 580	n:4180000
RGS14   4180000 perm   7389 sec   (566 perm/sec)   p_kst 1.387560e-04   p_cons 3.946383e-01   p_joint 4.897129e-04

Joint ci ratio: 8.645171e-02	ci left: 4.692467e-04	ci right 5.118781e-04	k: 2054	n:4190000
Cons ci ratio: 2.371967e-03	ci left: 3.941460e-01	ci right 3.950823e-01	k: 1653433	n:4190000
KS ci ratio: 1.621994e-01	ci left: 1.280747e-04	ci right 1.509071e-04	k: 583	n:4190000
RGS14   4190000 perm   7423 sec   (564 perm/sec)   p_kst 1.391408e-04   p_cons 3.946141e-01   p_joint 4.902148e-04

Joint ci ratio: 8.634673e-02	ci left: 4.692942e-04	ci right 5.118756e-04	k: 2059	n:4200000
Cons ci ratio: 2.369182e-03	ci left: 3.941385e-01	ci right 3.950736e-01	k: 1657345	n:4200000
KS ci ratio: 1.620607e-01	ci left: 1.279982e-04	ci right 1.507956e-04	k: 584	n:4200000
RGS14   4200000 perm   7456 sec   (563 perm/sec)   p_kst 1.390476e-04   p_cons 3.946060e-01   p_joint 4.902381e-04

Joint ci ratio: 8.626303e-02	ci left: 4.691091e-04	ci right 5.116303e-04	k: 2063	n:4210000
Cons ci ratio: 2.366296e-03	ci left: 3.941533e-01	ci right 3.950873e-01	k: 1661351	n:4210000
KS ci ratio: 1.617844e-01	ci left: 1.281500e-04	ci right 1.509317e-04	k: 586	n:4210000
RGS14   4210000 perm   7490 sec   (562 perm/sec)   p_kst 1.391924e-04   p_cons 3.946202e-01   p_joint 4.900238e-04

Joint ci ratio: 8.622129e-02	ci left: 4.684612e-04	ci right 5.109021e-04	k: 2065	n:4220000
Cons ci ratio: 2.363423e-03	ci left: 3.941675e-01	ci right 3.951004e-01	k: 1665355	n:4220000
KS ci ratio: 1.616468e-01	ci left: 1.280737e-04	ci right 1.508206e-04	k: 587	n:4220000
RGS14   4220000 perm   7524 sec   (561 perm/sec)   p_kst 1.390995e-04   p_cons 3.946339e-01   p_joint 4.893365e-04

Joint ci ratio: 8.599261e-02	ci left: 4.698982e-04	ci right 5.123507e-04	k: 2076	n:4230000
Cons ci ratio: 2.360654e-03	ci left: 3.941628e-01	ci right 3.950946e-01	k: 1669279	n:4230000
KS ci ratio: 1.613726e-01	ci left: 1.282246e-04	ci right 1.509559e-04	k: 589	n:4230000
RGS14   4230000 perm   7558 sec   (560 perm/sec)   p_kst 1.392435e-04   p_cons 3.946286e-01   p_joint 4.907801e-04

Joint ci ratio: 8.584804e-02	ci left: 4.704054e-04	ci right 5.128288e-04	k: 2083	n:4240000
Cons ci ratio: 2.357834e-03	ci left: 3.941703e-01	ci right 3.951010e-01	k: 1673255	n:4240000
KS ci ratio: 1.608283e-01	ci left: 1.288275e-04	ci right 1.515813e-04	k: 593	n:4240000
RGS14   4240000 perm   7592 sec   (558 perm/sec)   p_kst 1.398585e-04   p_cons 3.946356e-01   p_joint 4.912736e-04

Joint ci ratio: 8.574524e-02	ci left: 4.704498e-04	ci right 5.128238e-04	k: 2088	n:4250000
Cons ci ratio: 2.355081e-03	ci left: 3.941663e-01	ci right 3.950959e-01	k: 1677182	n:4250000
KS ci ratio: 1.604236e-01	ci left: 1.292019e-04	ci right 1.519589e-04	k: 596	n:4250000
RGS14   4250000 perm   7626 sec   (557 perm/sec)   p_kst 1.402353e-04   p_cons 3.946311e-01   p_joint 4.912941e-04

Joint ci ratio: 8.570426e-02	ci left: 4.698049e-04	ci right 5.120995e-04	k: 2090	n:4260000
Cons ci ratio: 2.352292e-03	ci left: 3.941715e-01	ci right 3.951000e-01	k: 1681148	n:4260000
KS ci ratio: 1.604237e-01	ci left: 1.288986e-04	ci right 1.516022e-04	k: 596	n:4260000
RGS14   4260000 perm   7660 sec   (556 perm/sec)   p_kst 1.399061e-04   p_cons 3.946357e-01   p_joint 4.906103e-04

Joint ci ratio: 8.556114e-02	ci left: 4.703089e-04	ci right 5.125747e-04	k: 2097	n:4270000
Cons ci ratio: 2.349378e-03	ci left: 3.942043e-01	ci right 3.951317e-01	k: 1685232	n:4270000
KS ci ratio: 1.597560e-01	ci left: 1.297208e-04	ci right 1.524649e-04	k: 601	n:4270000
RGS14   4270000 perm   7695 sec   (555 perm/sec)   p_kst 1.407494e-04   p_cons 3.946679e-01   p_joint 4.911007e-04

Joint ci ratio: 8.541874e-02	ci left: 4.708106e-04	ci right 5.130475e-04	k: 2104	n:4280000
Cons ci ratio: 2.346588e-03	ci left: 3.942138e-01	ci right 3.951401e-01	k: 1689217	n:4280000
KS ci ratio: 1.594913e-01	ci left: 1.298664e-04	ci right 1.525947e-04	k: 603	n:4280000
RGS14   4280000 perm   7730 sec   (554 perm/sec)   p_kst 1.408879e-04   p_cons 3.946769e-01   p_joint 4.915888e-04

Joint ci ratio: 8.525685e-02	ci left: 4.715381e-04	ci right 5.137562e-04	k: 2112	n:4290000
Cons ci ratio: 2.343769e-03	ci left: 3.942311e-01	ci right 3.951564e-01	k: 1693236	n:4290000
KS ci ratio: 1.592278e-01	ci left: 1.300113e-04	ci right 1.527237e-04	k: 605	n:4290000
RGS14   4290000 perm   7765 sec   (552 perm/sec)   p_kst 1.410256e-04   p_cons 3.946937e-01   p_joint 4.923077e-04

Joint ci ratio: 8.507582e-02	ci left: 4.724900e-04	ci right 5.146990e-04	k: 2121	n:4300000
Cons ci ratio: 2.341020e-03	ci left: 3.942361e-01	ci right 3.951603e-01	k: 1697202	n:4300000
KS ci ratio: 1.592279e-01	ci left: 1.297089e-04	ci right 1.523686e-04	k: 605	n:4300000
RGS14   4300000 perm   7800 sec   (551 perm/sec)   p_kst 1.406977e-04   p_cons 3.946981e-01   p_joint 4.932558e-04

Joint ci ratio: 8.497576e-02	ci left: 4.725291e-04	ci right 5.146896e-04	k: 2126	n:4310000
Cons ci ratio: 2.338320e-03	ci left: 3.942332e-01	ci right 3.951563e-01	k: 1701134	n:4310000
KS ci ratio: 1.590967e-01	ci left: 1.296307e-04	ci right 1.522563e-04	k: 606	n:4310000
RGS14   4310000 perm   7834 sec   (550 perm/sec)   p_kst 1.406032e-04   p_cons 3.946947e-01   p_joint 4.932715e-04

Joint ci ratio: 8.479651e-02	ci left: 4.734744e-04	ci right 5.156257e-04	k: 2135	n:4320000
Cons ci ratio: 2.335573e-03	ci left: 3.942416e-01	ci right 3.951637e-01	k: 1705115	n:4320000
KS ci ratio: 1.589658e-01	ci left: 1.295529e-04	ci right 1.521445e-04	k: 607	n:4320000
RGS14   4320000 perm   7870 sec   (549 perm/sec)   p_kst 1.405093e-04   p_cons 3.947025e-01   p_joint 4.942130e-04

Joint ci ratio: 8.475687e-02	ci left: 4.728331e-04	ci right 5.149066e-04	k: 2137	n:4330000
Cons ci ratio: 2.332863e-03	ci left: 3.942444e-01	ci right 3.951654e-01	k: 1709072	n:4330000
KS ci ratio: 1.589658e-01	ci left: 1.292537e-04	ci right 1.517932e-04	k: 607	n:4330000
RGS14   4330000 perm   7905 sec   (548 perm/sec)   p_kst 1.401848e-04   p_cons 3.947048e-01   p_joint 4.935335e-04

Joint ci ratio: 8.461844e-02	ci left: 4.733223e-04	ci right 5.153672e-04	k: 2144	n:4340000
Cons ci ratio: 2.330119e-03	ci left: 3.942562e-01	ci right 3.951762e-01	k: 1713068	n:4340000
KS ci ratio: 1.588353e-01	ci left: 1.291772e-04	ci right 1.516830e-04	k: 608	n:4340000
RGS14   4340000 perm   7939 sec   (547 perm/sec)   p_kst 1.400922e-04   p_cons 3.947161e-01   p_joint 4.940092e-04

Joint ci ratio: 8.444144e-02	ci left: 4.742595e-04	ci right 5.162951e-04	k: 2153	n:4350000
Cons ci ratio: 2.327391e-03	ci left: 3.942666e-01	ci right 3.951855e-01	k: 1717058	n:4350000
KS ci ratio: 1.585751e-01	ci left: 1.293217e-04	ci right 1.518123e-04	k: 610	n:4350000
RGS14   4350000 perm   7975 sec   (545 perm/sec)   p_kst 1.402299e-04   p_cons 3.947260e-01   p_joint 4.949425e-04

Joint ci ratio: 8.436315e-02	ci left: 4.740698e-04	ci right 5.160477e-04	k: 2157	n:4360000
Cons ci ratio: 2.324717e-03	ci left: 3.942680e-01	ci right 3.951858e-01	k: 1721009	n:4360000
KS ci ratio: 1.584455e-01	ci left: 1.292454e-04	ci right 1.517025e-04	k: 611	n:4360000
RGS14   4360000 perm   8010 sec   (544 perm/sec)   p_kst 1.401376e-04   p_cons 3.947268e-01   p_joint 4.947248e-04

Joint ci ratio: 8.432411e-02	ci left: 4.734330e-04	ci right 5.153342e-04	k: 2159	n:4370000
Cons ci ratio: 2.322069e-03	ci left: 3.942657e-01	ci right 3.951825e-01	k: 1724944	n:4370000
KS ci ratio: 1.583162e-01	ci left: 1.291694e-04	ci right 1.515933e-04	k: 612	n:4370000
RGS14   4370000 perm   8045 sec   (543 perm/sec)   p_kst 1.400458e-04   p_cons 3.947240e-01   p_joint 4.940503e-04

Joint ci ratio: 8.411016e-02	ci left: 4.748106e-04	ci right 5.167219e-04	k: 2170	n:4380000
Cons ci ratio: 2.319466e-03	ci left: 3.942561e-01	ci right 3.951719e-01	k: 1728847	n:4380000
KS ci ratio: 1.576744e-01	ci left: 1.299709e-04	ci right 1.524338e-04	k: 617	n:4380000
RGS14   4380000 perm   8080 sec   (542 perm/sec)   p_kst 1.408676e-04   p_cons 3.947139e-01   p_joint 4.954338e-04

Joint ci ratio: 8.395559e-02	ci left: 4.755131e-04	ci right 5.174054e-04	k: 2178	n:4390000
Cons ci ratio: 2.316785e-03	ci left: 3.942644e-01	ci right 3.951791e-01	k: 1732828	n:4390000
KS ci ratio: 1.574199e-01	ci left: 1.301125e-04	ci right 1.525601e-04	k: 619	n:4390000
RGS14   4390000 perm   8115 sec   (541 perm/sec)   p_kst 1.410023e-04   p_cons 3.947216e-01   p_joint 4.961276e-04

Joint ci ratio: 8.384023e-02	ci left: 4.757674e-04	ci right 5.176218e-04	k: 2184	n:4400000
Cons ci ratio: 2.314115e-03	ci left: 3.942723e-01	ci right 3.951860e-01	k: 1736808	n:4400000
KS ci ratio: 1.569144e-01	ci left: 1.306901e-04	ci right 1.531582e-04	k: 623	n:4400000
RGS14   4400000 perm   8149 sec   (540 perm/sec)   p_kst 1.415909e-04   p_cons 3.947291e-01   p_joint 4.963636e-04

Joint ci ratio: 8.374446e-02	ci left: 4.757986e-04	ci right 5.176056e-04	k: 2189	n:4410000
Cons ci ratio: 2.311494e-03	ci left: 3.942719e-01	ci right 3.951845e-01	k: 1740751	n:4410000
KS ci ratio: 1.569145e-01	ci left: 1.303937e-04	ci right 1.528109e-04	k: 623	n:4410000
RGS14   4410000 perm   8185 sec   (539 perm/sec)   p_kst 1.412698e-04   p_cons 3.947281e-01   p_joint 4.963719e-04

Joint ci ratio: 8.357288e-02	ci left: 4.767157e-04	ci right 5.185133e-04	k: 2198	n:4420000
Cons ci ratio: 2.308944e-03	ci left: 3.942588e-01	ci right 3.951703e-01	k: 1744638	n:4420000
KS ci ratio: 1.565386e-01	ci left: 1.307508e-04	ci right 1.531705e-04	k: 626	n:4420000
RGS14   4420000 perm   8222 sec   (538 perm/sec)   p_kst 1.416290e-04   p_cons 3.947145e-01   p_joint 4.972851e-04

Joint ci ratio: 8.351594e-02	ci left: 4.763027e-04	ci right 5.180342e-04	k: 2201	n:4430000
Cons ci ratio: 2.306318e-03	ci left: 3.942631e-01	ci right 3.951736e-01	k: 1748602	n:4430000
KS ci ratio: 1.565386e-01	ci left: 1.304557e-04	ci right 1.528248e-04	k: 626	n:4430000
RGS14   4430000 perm   8257 sec   (537 perm/sec)   p_kst 1.413093e-04   p_cons 3.947183e-01   p_joint 4.968397e-04

Joint ci ratio: 8.342129e-02	ci left: 4.763325e-04	ci right 5.180171e-04	k: 2206	n:4440000
Cons ci ratio: 2.303701e-03	ci left: 3.942674e-01	ci right 3.951769e-01	k: 1752566	n:4440000
KS ci ratio: 1.565386e-01	ci left: 1.301619e-04	ci right 1.524806e-04	k: 626	n:4440000
RGS14   4440000 perm   8292 sec   (535 perm/sec)   p_kst 1.409910e-04   p_cons 3.947221e-01   p_joint 4.968468e-04

Joint ci ratio: 8.330811e-02	ci left: 4.765823e-04	ci right 5.182294e-04	k: 2212	n:4450000
Cons ci ratio: 2.301106e-03	ci left: 3.942690e-01	ci right 3.951775e-01	k: 1756518	n:4450000
KS ci ratio: 1.561655e-01	ci left: 1.305172e-04	ci right 1.528384e-04	k: 629	n:4450000
RGS14   4450000 perm   8328 sec   (534 perm/sec)   p_kst 1.413483e-04   p_cons 3.947231e-01   p_joint 4.970787e-04

Joint ci ratio: 8.325172e-02	ci left: 4.761724e-04	ci right 5.177541e-04	k: 2215	n:4460000
Cons ci ratio: 2.298488e-03	ci left: 3.942770e-01	ci right 3.951845e-01	k: 1760499	n:4460000
KS ci ratio: 1.561655e-01	ci left: 1.302245e-04	ci right 1.524957e-04	k: 629	n:4460000
RGS14   4460000 perm   8363 sec   (533 perm/sec)   p_kst 1.410314e-04   p_cons 3.947307e-01   p_joint 4.966368e-04

Joint ci ratio: 8.313923e-02	ci left: 4.764215e-04	ci right 5.179660e-04	k: 2221	n:4470000
Cons ci ratio: 2.295921e-03	ci left: 3.942766e-01	ci right 3.951831e-01	k: 1764442	n:4470000
KS ci ratio: 1.556720e-01	ci left: 1.307931e-04	ci right 1.530843e-04	k: 633	n:4470000
RGS14   4470000 perm   8398 sec   (532 perm/sec)   p_kst 1.416107e-04   p_cons 3.947298e-01   p_joint 4.968680e-04

Joint ci ratio: 8.302720e-02	ci left: 4.766695e-04	ci right 5.181769e-04	k: 2227	n:4480000
Cons ci ratio: 2.293334e-03	ci left: 3.942817e-01	ci right 3.951872e-01	k: 1768410	n:4480000
KS ci ratio: 1.556721e-01	ci left: 1.305012e-04	ci right 1.527426e-04	k: 633	n:4480000
RGS14   4480000 perm   8434 sec   (531 perm/sec)   p_kst 1.412946e-04   p_cons 3.947344e-01   p_joint 4.970982e-04

Joint ci ratio: 8.285998e-02	ci left: 4.775708e-04	ci right 5.190689e-04	k: 2236	n:4490000
Cons ci ratio: 2.290743e-03	ci left: 3.942897e-01	ci right 3.951942e-01	k: 1772391	n:4490000
KS ci ratio: 1.555494e-01	ci left: 1.304246e-04	ci right 1.526338e-04	k: 634	n:4490000
RGS14   4490000 perm   8471 sec   (530 perm/sec)   p_kst 1.412027e-04   p_cons 3.947419e-01   p_joint 4.979955e-04

Joint ci ratio: 8.278600e-02	ci left: 4.773800e-04	ci right 5.188227e-04	k: 2240	n:4500000
Cons ci ratio: 2.288192e-03	ci left: 3.942912e-01	ci right 3.951947e-01	k: 1776343	n:4500000
KS ci ratio: 1.553050e-01	ci left: 1.305619e-04	ci right 1.527563e-04	k: 636	n:4500000
RGS14   4500000 perm   8507 sec   (529 perm/sec)   p_kst 1.413333e-04   p_cons 3.947429e-01   p_joint 4.977778e-04

Joint ci ratio: 8.262023e-02	ci left: 4.782758e-04	ci right 5.197091e-04	k: 2249	n:4510000
Cons ci ratio: 2.285701e-03	ci left: 3.942819e-01	ci right 3.951843e-01	k: 1780246	n:4510000
KS ci ratio: 1.546990e-01	ci left: 1.313381e-04	ci right 1.535692e-04	k: 641	n:4510000
RGS14   4510000 perm   8543 sec   (528 perm/sec)   p_kst 1.421286e-04   p_cons 3.947330e-01   p_joint 4.986696e-04

Joint ci ratio: 8.252858e-02	ci left: 4.783010e-04	ci right 5.196883e-04	k: 2254	n:4520000
Cons ci ratio: 2.283151e-03	ci left: 3.942865e-01	ci right 3.951880e-01	k: 1784212	n:4520000
KS ci ratio: 1.544586e-01	ci left: 1.314729e-04	ci right 1.536891e-04	k: 643	n:4520000
RGS14   4520000 perm   8579 sec   (527 perm/sec)   p_kst 1.422566e-04   p_cons 3.947372e-01   p_joint 4.986726e-04

Joint ci ratio: 8.243724e-02	ci left: 4.783262e-04	ci right 5.196676e-04	k: 2259	n:4530000
Cons ci ratio: 2.280634e-03	ci left: 3.942860e-01	ci right 3.951865e-01	k: 1788155	n:4530000
KS ci ratio: 1.543388e-01	ci left: 1.313948e-04	ci right 1.535791e-04	k: 644	n:4530000
RGS14   4530000 perm   8616 sec   (526 perm/sec)   p_kst 1.421634e-04   p_cons 3.947362e-01   p_joint 4.986755e-04

Joint ci ratio: 8.234620e-02	ci left: 4.783512e-04	ci right 5.196470e-04	k: 2264	n:4540000
Cons ci ratio: 2.278098e-03	ci left: 3.942913e-01	ci right 3.951908e-01	k: 1792124	n:4540000
KS ci ratio: 1.542193e-01	ci left: 1.313172e-04	ci right 1.534696e-04	k: 645	n:4540000
RGS14   4540000 perm   8652 sec   (525 perm/sec)   p_kst 1.420705e-04   p_cons 3.947410e-01   p_joint 4.986784e-04

Joint ci ratio: 8.221923e-02	ci left: 4.788067e-04	ci right 5.200750e-04	k: 2271	n:4550000
Cons ci ratio: 2.275592e-03	ci left: 3.942921e-01	ci right 3.951906e-01	k: 1796073	n:4550000
KS ci ratio: 1.541001e-01	ci left: 1.312399e-04	ci right 1.533605e-04	k: 646	n:4550000
RGS14   4550000 perm   8689 sec   (524 perm/sec)   p_kst 1.419780e-04   p_cons 3.947413e-01   p_joint 4.991209e-04

Joint ci ratio: 8.212891e-02	ci left: 4.788307e-04	ci right 5.200535e-04	k: 2276	n:4560000
Cons ci ratio: 2.272949e-03	ci left: 3.943235e-01	ci right 3.952210e-01	k: 1800161	n:4560000
KS ci ratio: 1.537441e-01	ci left: 1.315846e-04	ci right 1.537074e-04	k: 649	n:4560000
RGS14   4560000 perm   8726 sec   (523 perm/sec)   p_kst 1.423246e-04   p_cons 3.947721e-01   p_joint 4.991228e-04

Joint ci ratio: 8.205687e-02	ci left: 4.786402e-04	ci right 5.198088e-04	k: 2280	n:4570000
Cons ci ratio: 2.270407e-03	ci left: 3.943352e-01	ci right 3.952317e-01	k: 1804160	n:4570000
KS ci ratio: 1.535081e-01	ci left: 1.317175e-04	ci right 1.538255e-04	k: 651	n:4570000
RGS14   4570000 perm   8762 sec   (522 perm/sec)   p_kst 1.424508e-04   p_cons 3.947834e-01   p_joint 4.989059e-04

Joint ci ratio: 8.194915e-02	ci left: 4.788783e-04	ci right 5.200107e-04	k: 2286	n:4580000
Cons ci ratio: 2.267915e-03	ci left: 3.943383e-01	ci right 3.952339e-01	k: 1808120	n:4580000
KS ci ratio: 1.535081e-01	ci left: 1.314299e-04	ci right 1.534897e-04	k: 651	n:4580000
RGS14   4580000 perm   8799 sec   (521 perm/sec)   p_kst 1.421397e-04   p_cons 3.947860e-01   p_joint 4.991266e-04

Joint ci ratio: 8.194920e-02	ci left: 4.778350e-04	ci right 5.188778e-04	k: 2286	n:4590000
Cons ci ratio: 2.265324e-03	ci left: 3.943639e-01	ci right 3.952585e-01	k: 1812183	n:4590000
KS ci ratio: 1.535081e-01	ci left: 1.311436e-04	ci right 1.531553e-04	k: 651	n:4590000
RGS14   4590000 perm   8835 sec   (520 perm/sec)   p_kst 1.418301e-04   p_cons 3.948111e-01   p_joint 4.980392e-04

Joint ci ratio: 8.184190e-02	ci left: 4.780739e-04	ci right 5.190809e-04	k: 2292	n:4600000
Cons ci ratio: 2.262781e-03	ci left: 3.943811e-01	ci right 3.952747e-01	k: 1816208	n:4600000
KS ci ratio: 1.532732e-01	ci left: 1.312766e-04	ci right 1.532738e-04	k: 653	n:4600000
RGS14   4600000 perm   8872 sec   (519 perm/sec)   p_kst 1.419565e-04   p_cons 3.948278e-01   p_joint 4.982609e-04

Joint ci ratio: 8.169948e-02	ci left: 4.787367e-04	ci right 5.197257e-04	k: 2300	n:4610000
Cons ci ratio: 2.260281e-03	ci left: 3.943911e-01	ci right 3.952837e-01	k: 1820200	n:4610000
KS ci ratio: 1.530394e-01	ci left: 1.314090e-04	ci right 1.533917e-04	k: 655	n:4610000
RGS14   4610000 perm   8908 sec   (517 perm/sec)   p_kst 1.420824e-04   p_cons 3.948373e-01   p_joint 4.989154e-04

Joint ci ratio: 8.162857e-02	ci left: 4.785486e-04	ci right 5.194843e-04	k: 2304	n:4620000
Cons ci ratio: 2.257842e-03	ci left: 3.943897e-01	ci right 3.952814e-01	k: 1824140	n:4620000
KS ci ratio: 1.530394e-01	ci left: 1.311246e-04	ci right 1.530597e-04	k: 655	n:4620000
RGS14   4620000 perm   8945 sec   (516 perm/sec)   p_kst 1.417749e-04   p_cons 3.948355e-01   p_joint 4.987013e-04

Joint ci ratio: 8.159321e-02	ci left: 4.779382e-04	ci right 5.188030e-04	k: 2306	n:4630000
Cons ci ratio: 2.255429e-03	ci left: 3.943845e-01	ci right 3.952752e-01	k: 1828062	n:4630000
KS ci ratio: 1.530394e-01	ci left: 1.308414e-04	ci right 1.527291e-04	k: 655	n:4630000
RGS14   4630000 perm   8984 sec   (515 perm/sec)   p_kst 1.414687e-04   p_cons 3.948298e-01   p_joint 4.980562e-04

Joint ci ratio: 8.154022e-02	ci left: 4.775415e-04	ci right 5.183447e-04	k: 2309	n:4640000
Cons ci ratio: 2.252965e-03	ci left: 3.943918e-01	ci right 3.952816e-01	k: 1832042	n:4640000
KS ci ratio: 1.530395e-01	ci left: 1.305594e-04	ci right 1.524000e-04	k: 655	n:4640000
RGS14   4640000 perm   9025 sec   (514 perm/sec)   p_kst 1.411638e-04   p_cons 3.948366e-01   p_joint 4.976293e-04

Joint ci ratio: 8.148734e-02	ci left: 4.771465e-04	ci right 5.178883e-04	k: 2312	n:4650000
Cons ci ratio: 2.250632e-03	ci left: 3.943731e-01	ci right 3.952619e-01	k: 1835901	n:4650000
KS ci ratio: 1.530395e-01	ci left: 1.302786e-04	ci right 1.520722e-04	k: 655	n:4650000
RGS14   4650000 perm   9063 sec   (513 perm/sec)   p_kst 1.408602e-04   p_cons 3.948174e-01   p_joint 4.972043e-04

Joint ci ratio: 8.138185e-02	ci left: 4.773839e-04	ci right 5.180907e-04	k: 2318	n:4660000
Cons ci ratio: 2.248279e-03	ci left: 3.943602e-01	ci right 3.952481e-01	k: 1839787	n:4660000
KS ci ratio: 1.530395e-01	ci left: 1.299991e-04	ci right 1.517459e-04	k: 655	n:4660000
RGS14   4660000 perm   9101 sec   (512 perm/sec)   p_kst 1.405579e-04   p_cons 3.948041e-01   p_joint 4.974249e-04

Joint ci ratio: 8.132928e-02	ci left: 4.769910e-04	ci right 5.176368e-04	k: 2321	n:4670000
Cons ci ratio: 2.245875e-03	ci left: 3.943596e-01	ci right 3.952465e-01	k: 1843730	n:4670000
KS ci ratio: 1.529230e-01	ci left: 1.299266e-04	ci right 1.516433e-04	k: 656	n:4670000
RGS14   4670000 perm   9140 sec   (511 perm/sec)   p_kst 1.404711e-04   p_cons 3.948030e-01   p_joint 4.970021e-04

Joint ci ratio: 8.118951e-02	ci left: 4.776465e-04	ci right 5.182748e-04	k: 2329	n:4680000
Cons ci ratio: 2.243606e-03	ci left: 3.943321e-01	ci right 3.952180e-01	k: 1847547	n:4680000
KS ci ratio: 1.528068e-01	ci left: 1.298545e-04	ci right 1.515411e-04	k: 657	n:4680000
RGS14   4680000 perm   9178 sec   (510 perm/sec)   p_kst 1.403846e-04   p_cons 3.947750e-01   p_joint 4.976496e-04

Joint ci ratio: 8.111992e-02	ci left: 4.774636e-04	ci right 5.180399e-04	k: 2333	n:4690000
Cons ci ratio: 2.241290e-03	ci left: 3.943160e-01	ci right 3.952010e-01	k: 1851417	n:4690000
KS ci ratio: 1.526908e-01	ci left: 1.297827e-04	ci right 1.514394e-04	k: 658	n:4690000
RGS14   4690000 perm   9216 sec   (509 perm/sec)   p_kst 1.402985e-04   p_cons 3.947584e-01   p_joint 4.974414e-04

Joint ci ratio: 8.108521e-02	ci left: 4.768646e-04	ci right 5.173719e-04	k: 2335	n:4700000
Cons ci ratio: 2.238861e-03	ci left: 3.943259e-01	ci right 3.952100e-01	k: 1855409	n:4700000
KS ci ratio: 1.525751e-01	ci left: 1.297112e-04	ci right 1.513380e-04	k: 659	n:4700000
RGS14   4700000 perm   9254 sec   (508 perm/sec)   p_kst 1.402128e-04   p_cons 3.947679e-01   p_joint 4.968085e-04

Joint ci ratio: 8.098127e-02	ci left: 4.771002e-04	ci right 5.175731e-04	k: 2341	n:4710000
Cons ci ratio: 2.236446e-03	ci left: 3.943341e-01	ci right 3.952172e-01	k: 1859393	n:4710000
KS ci ratio: 1.522295e-01	ci left: 1.300485e-04	ci right 1.516779e-04	k: 662	n:4710000
RGS14   4710000 perm   9292 sec   (507 perm/sec)   p_kst 1.405520e-04   p_cons 3.947756e-01   p_joint 4.970276e-04

Joint ci ratio: 8.091221e-02	ci left: 4.769197e-04	ci right 5.173412e-04	k: 2345	n:4720000
Cons ci ratio: 2.234056e-03	ci left: 3.943389e-01	ci right 3.952210e-01	k: 1863361	n:4720000
KS ci ratio: 1.521148e-01	ci left: 1.299767e-04	ci right 1.515765e-04	k: 663	n:4720000
RGS14   4720000 perm   9330 sec   (506 perm/sec)   p_kst 1.404661e-04   p_cons 3.947799e-01   p_joint 4.968220e-04

Joint ci ratio: 8.086054e-02	ci left: 4.765329e-04	ci right 5.168945e-04	k: 2348	n:4730000
Cons ci ratio: 2.231661e-03	ci left: 3.943461e-01	ci right 3.952274e-01	k: 1867341	n:4730000
KS ci ratio: 1.521148e-01	ci left: 1.297019e-04	ci right 1.512561e-04	k: 663	n:4730000
RGS14   4730000 perm   9368 sec   (505 perm/sec)   p_kst 1.401691e-04   p_cons 3.947867e-01   p_joint 4.964059e-04

Joint ci ratio: 8.072317e-02	ci left: 4.771812e-04	ci right 5.175259e-04	k: 2356	n:4740000
Cons ci ratio: 2.229213e-03	ci left: 3.943667e-01	ci right 3.952470e-01	k: 1871384	n:4740000
KS ci ratio: 1.518862e-01	ci left: 1.298342e-04	ci right 1.513749e-04	k: 665	n:4740000
RGS14   4740000 perm   9406 sec   (504 perm/sec)   p_kst 1.402954e-04   p_cons 3.948068e-01   p_joint 4.970464e-04

Joint ci ratio: 8.067187e-02	ci left: 4.767954e-04	ci right 5.170807e-04	k: 2359	n:4750000
Cons ci ratio: 2.226825e-03	ci left: 3.943757e-01	ci right 3.952551e-01	k: 1875373	n:4750000
KS ci ratio: 1.517723e-01	ci left: 1.297634e-04	ci right 1.512748e-04	k: 666	n:4750000
RGS14   4750000 perm   9444 sec   (503 perm/sec)   p_kst 1.402105e-04   p_cons 3.948154e-01   p_joint 4.966316e-04

Joint ci ratio: 8.058654e-02	ci left: 4.768230e-04	ci right 5.170660e-04	k: 2364	n:4760000
Cons ci ratio: 2.224505e-03	ci left: 3.943718e-01	ci right 3.952502e-01	k: 1879300	n:4760000
KS ci ratio: 1.517724e-01	ci left: 1.294908e-04	ci right 1.509570e-04	k: 666	n:4760000
RGS14   4760000 perm   9483 sec   (502 perm/sec)   p_kst 1.399160e-04   p_cons 3.948109e-01   p_joint 4.966387e-04

Joint ci ratio: 8.050149e-02	ci left: 4.768505e-04	ci right 5.170513e-04	k: 2369	n:4770000
Cons ci ratio: 2.222104e-03	ci left: 3.943869e-01	ci right 3.952644e-01	k: 1883318	n:4770000
KS ci ratio: 1.516587e-01	ci left: 1.294210e-04	ci right 1.508581e-04	k: 667	n:4770000
RGS14   4770000 perm   9521 sec   (501 perm/sec)   p_kst 1.398323e-04   p_cons 3.948256e-01   p_joint 4.966457e-04

Joint ci ratio: 8.043365e-02	ci left: 4.766729e-04	ci right 5.168232e-04	k: 2373	n:4780000
Cons ci ratio: 2.219824e-03	ci left: 3.943774e-01	ci right 3.952541e-01	k: 1887219	n:4780000
KS ci ratio: 1.516587e-01	ci left: 1.291502e-04	ci right 1.505425e-04	k: 667	n:4780000
RGS14   4780000 perm   9559 sec   (500 perm/sec)   p_kst 1.395397e-04   p_cons 3.948157e-01   p_joint 4.964435e-04

Joint ci ratio: 8.034908e-02	ci left: 4.767006e-04	ci right 5.168091e-04	k: 2378	n:4790000
Cons ci ratio: 2.217504e-03	ci left: 3.943783e-01	ci right 3.952540e-01	k: 1891169	n:4790000
KS ci ratio: 1.515454e-01	ci left: 1.290815e-04	ci right 1.504449e-04	k: 668	n:4790000
RGS14   4790000 perm   9597 sec   (499 perm/sec)   p_kst 1.394572e-04   p_cons 3.948161e-01   p_joint 4.964509e-04

Joint ci ratio: 8.028163e-02	ci left: 4.765241e-04	ci right 5.165825e-04	k: 2382	n:4800000
Cons ci ratio: 2.215239e-03	ci left: 3.943687e-01	ci right 3.952435e-01	k: 1895069	n:4800000
KS ci ratio: 1.515454e-01	ci left: 1.288125e-04	ci right 1.501315e-04	k: 668	n:4800000
RGS14   4800000 perm   9636 sec   (498 perm/sec)   p_kst 1.391667e-04   p_cons 3.948060e-01   p_joint 4.962500e-04

Joint ci ratio: 8.019754e-02	ci left: 4.765520e-04	ci right 5.165689e-04	k: 2387	n:4810000
Cons ci ratio: 2.212873e-03	ci left: 3.943827e-01	ci right 3.952565e-01	k: 1899082	n:4810000
KS ci ratio: 1.512067e-01	ci left: 1.291448e-04	ci right 1.504666e-04	k: 671	n:4810000
RGS14   4810000 perm   9674 sec   (497 perm/sec)   p_kst 1.395010e-04   p_cons 3.948195e-01   p_joint 4.962578e-04

Joint ci ratio: 8.011371e-02	ci left: 4.765799e-04	ci right 5.165553e-04	k: 2392	n:4820000
Cons ci ratio: 2.210498e-03	ci left: 3.944001e-01	ci right 3.952731e-01	k: 1903112	n:4820000
KS ci ratio: 1.510943e-01	ci left: 1.290765e-04	ci right 1.503698e-04	k: 672	n:4820000
RGS14   4820000 perm   9714 sec   (496 perm/sec)   p_kst 1.394191e-04   p_cons 3.948365e-01   p_joint 4.962656e-04

Joint ci ratio: 8.004684e-02	ci left: 4.764047e-04	ci right 5.163305e-04	k: 2396	n:4830000
Cons ci ratio: 2.208216e-03	ci left: 3.943988e-01	ci right 3.952709e-01	k: 1907052	n:4830000
KS ci ratio: 1.509822e-01	ci left: 1.290085e-04	ci right 1.502733e-04	k: 673	n:4830000
RGS14   4830000 perm   9755 sec   (495 perm/sec)   p_kst 1.393375e-04   p_cons 3.948348e-01   p_joint 4.960663e-04

Joint ci ratio: 7.994684e-02	ci left: 4.766353e-04	ci right 5.165282e-04	k: 2402	n:4840000
Cons ci ratio: 2.205961e-03	ci left: 3.943934e-01	ci right 3.952646e-01	k: 1910972	n:4840000
KS ci ratio: 1.509822e-01	ci left: 1.287419e-04	ci right 1.499628e-04	k: 673	n:4840000
RGS14   4840000 perm   9795 sec   (494 perm/sec)   p_kst 1.390496e-04   p_cons 3.948289e-01   p_joint 4.962810e-04

Joint ci ratio: 7.991362e-02	ci left: 4.760567e-04	ci right 5.158838e-04	k: 2404	n:4850000
Cons ci ratio: 2.203797e-03	ci left: 3.943697e-01	ci right 3.952399e-01	k: 1914803	n:4850000
KS ci ratio: 1.508704e-01	ci left: 1.286749e-04	ci right 1.498676e-04	k: 674	n:4850000
RGS14   4850000 perm   9833 sec   (493 perm/sec)   p_kst 1.389691e-04   p_cons 3.948047e-01   p_joint 4.956701e-04

Joint ci ratio: 7.981411e-02	ci left: 4.762870e-04	ci right 5.160815e-04	k: 2410	n:4860000
Cons ci ratio: 2.201553e-03	ci left: 3.943648e-01	ci right 3.952341e-01	k: 1918725	n:4860000
KS ci ratio: 1.507587e-01	ci left: 1.286081e-04	ci right 1.497727e-04	k: 675	n:4860000
RGS14   4860000 perm   9873 sec   (492 perm/sec)   p_kst 1.388889e-04   p_cons 3.947994e-01   p_joint 4.958848e-04

Joint ci ratio: 7.973148e-02	ci left: 4.763153e-04	ci right 5.160690e-04	k: 2415	n:4870000
Cons ci ratio: 2.199259e-03	ci left: 3.943724e-01	ci right 3.952409e-01	k: 1922708	n:4870000
KS ci ratio: 1.506474e-01	ci left: 1.285416e-04	ci right 1.496783e-04	k: 676	n:4870000
RGS14   4870000 perm   9912 sec   (491 perm/sec)   p_kst 1.388090e-04   p_cons 3.948066e-01   p_joint 4.958932e-04

Joint ci ratio: 7.959977e-02	ci left: 4.769459e-04	ci right 5.166835e-04	k: 2423	n:4880000
Cons ci ratio: 2.196980e-03	ci left: 3.943782e-01	ci right 3.952457e-01	k: 1926682	n:4880000
KS ci ratio: 1.500941e-01	ci left: 1.292643e-04	ci right 1.504347e-04	k: 681	n:4880000
RGS14   4880000 perm   9952 sec   (490 perm/sec)   p_kst 1.395492e-04   p_cons 3.948119e-01   p_joint 4.965164e-04

Joint ci ratio: 7.953419e-02	ci left: 4.767723e-04	ci right 5.164611e-04	k: 2427	n:4890000
Cons ci ratio: 2.194734e-03	ci left: 3.943782e-01	ci right 3.952449e-01	k: 1930628	n:4890000
KS ci ratio: 1.500941e-01	ci left: 1.289999e-04	ci right 1.501270e-04	k: 681	n:4890000
RGS14   4890000 perm   9991 sec   (489 perm/sec)   p_kst 1.392638e-04   p_cons 3.948115e-01   p_joint 4.963190e-04

Joint ci ratio: 7.943609e-02	ci left: 4.769994e-04	ci right 5.166559e-04	k: 2433	n:4900000
Cons ci ratio: 2.192570e-03	ci left: 3.943619e-01	ci right 3.952277e-01	k: 1934494	n:4900000
KS ci ratio: 1.497650e-01	ci left: 1.293259e-04	ci right 1.504558e-04	k: 684	n:4900000
RGS14   4900000 perm   10030 sec   (489 perm/sec)   p_kst 1.395918e-04   p_cons 3.947947e-01   p_joint 4.965306e-04

Joint ci ratio: 7.933835e-02	ci left: 4.772257e-04	ci right 5.168499e-04	k: 2439	n:4910000
Cons ci ratio: 2.190330e-03	ci left: 3.943637e-01	ci right 3.952287e-01	k: 1938449	n:4910000
KS ci ratio: 1.495468e-01	ci left: 1.294546e-04	ci right 1.505720e-04	k: 686	n:4910000
RGS14   4910000 perm   10069 sec   (488 perm/sec)   p_kst 1.397149e-04   p_cons 3.947961e-01   p_joint 4.967413e-04

Joint ci ratio: 7.919240e-02	ci left: 4.780487e-04	ci right 5.176649e-04	k: 2448	n:4920000
Cons ci ratio: 2.188077e-03	ci left: 3.943699e-01	ci right 3.952339e-01	k: 1942425	n:4920000
KS ci ratio: 1.494381e-01	ci left: 1.293872e-04	ci right 1.504768e-04	k: 687	n:4920000
RGS14   4920000 perm   10107 sec   (487 perm/sec)   p_kst 1.396341e-04   p_cons 3.948018e-01   p_joint 4.975610e-04

Joint ci ratio: 7.909556e-02	ci left: 4.782720e-04	ci right 5.178560e-04	k: 2454	n:4930000
Cons ci ratio: 2.185851e-03	ci left: 3.943715e-01	ci right 3.952347e-01	k: 1946379	n:4930000
KS ci ratio: 1.493297e-01	ci left: 1.293200e-04	ci right 1.503820e-04	k: 688	n:4930000
RGS14   4930000 perm   10146 sec   (486 perm/sec)   p_kst 1.395538e-04   p_cons 3.948030e-01   p_joint 4.977688e-04

Joint ci ratio: 7.906339e-02	ci left: 4.777007e-04	ci right 5.172206e-04	k: 2456	n:4940000
Cons ci ratio: 2.183633e-03	ci left: 3.943730e-01	ci right 3.952353e-01	k: 1950332	n:4940000
KS ci ratio: 1.492214e-01	ci left: 1.292531e-04	ci right 1.502876e-04	k: 689	n:4940000
RGS14   4940000 perm   10187 sec   (485 perm/sec)   p_kst 1.394737e-04   p_cons 3.948040e-01   p_joint 4.971660e-04

Joint ci ratio: 7.901518e-02	ci left: 4.773297e-04	ci right 5.167938e-04	k: 2459	n:4950000
Cons ci ratio: 2.181382e-03	ci left: 3.943831e-01	ci right 3.952445e-01	k: 1954328	n:4950000
KS ci ratio: 1.492214e-01	ci left: 1.289919e-04	ci right 1.499839e-04	k: 689	n:4950000
RGS14   4950000 perm   10227 sec   (484 perm/sec)   p_kst 1.391919e-04   p_cons 3.948137e-01   p_joint 4.967677e-04

Joint ci ratio: 7.890298e-02	ci left: 4.777508e-04	ci right 5.171910e-04	k: 2466	n:4960000
Cons ci ratio: 2.179211e-03	ci left: 3.943770e-01	ci right 3.952376e-01	k: 1958244	n:4960000
KS ci ratio: 1.491134e-01	ci left: 1.289260e-04	ci right 1.498907e-04	k: 690	n:4960000
RGS14   4960000 perm   10267 sec   (483 perm/sec)   p_kst 1.391129e-04   p_cons 3.948073e-01   p_joint 4.971774e-04

Joint ci ratio: 7.879126e-02	ci left: 4.781702e-04	ci right 5.175866e-04	k: 2473	n:4970000
Cons ci ratio: 2.176988e-03	ci left: 3.943841e-01	ci right 3.952438e-01	k: 1962225	n:4970000
KS ci ratio: 1.490057e-01	ci left: 1.288603e-04	ci right 1.497978e-04	k: 691	n:4970000
RGS14   4970000 perm   10307 sec   (482 perm/sec)   p_kst 1.390342e-04   p_cons 3.948139e-01   p_joint 4.975855e-04

Joint ci ratio: 7.871176e-02	ci left: 4.781943e-04	ci right 5.175710e-04	k: 2478	n:4980000
Cons ci ratio: 2.174813e-03	ci left: 3.943819e-01	ci right 3.952407e-01	k: 1966160	n:4980000
KS ci ratio: 1.488981e-01	ci left: 1.287948e-04	ci right 1.497053e-04	k: 692	n:4980000
RGS14   4980000 perm   10348 sec   (481 perm/sec)   p_kst 1.389558e-04   p_cons 3.948112e-01   p_joint 4.975904e-04

Joint ci ratio: 7.863250e-02	ci left: 4.782182e-04	ci right 5.175555e-04	k: 2483	n:4990000
Cons ci ratio: 2.172676e-03	ci left: 3.943727e-01	ci right 3.952306e-01	k: 1970060	n:4990000
KS ci ratio: 1.486837e-01	ci left: 1.289226e-04	ci right 1.498210e-04	k: 694	n:4990000
RGS14   4990000 perm   10388 sec   (480 perm/sec)   p_kst 1.390782e-04   p_cons 3.948016e-01   p_joint 4.975952e-04

Joint ci ratio: 7.856928e-02	ci left: 4.780461e-04	ci right 5.173361e-04	k: 2487	n:5000000
Cons ci ratio: 2.170527e-03	ci left: 3.943677e-01	ci right 3.952248e-01	k: 1973981	n:5000000
KS ci ratio: 1.485769e-01	ci left: 1.288573e-04	ci right 1.497288e-04	k: 695	n:5000000
RGS14   5000000 perm   10427 sec   (480 perm/sec)   p_kst 1.390000e-04   p_cons 3.947962e-01   p_joint 4.974000e-04

Outputting figure to mutsig2_images.part000000000146/RGS14.2_1761_5000000_0.000139_0.3948_0.0004974.png
                gene_name: RGS14
               theta_stop: 0.15 
                    nperm: 5000000 
                     p_ks: 0.00014 
        ci_ks_bounds_left: 0.00013 
       ci_ks_bounds_right: 0.00015 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.00050 
     ci_joint_bounds_left: 0.00048 
    ci_joint_bounds_right: 0.00052 

Current progress: 85 percent done.
RGS16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.352252e-03	ci left: 9.712187e-01	ci right 9.775008e-01	k: 9745	n:10000
Cons ci ratio: 4.691824e-02	ci left: 4.013338e-01	ci right 4.207181e-01	k: 4110	n:10000
KS ci ratio: 2.365186e-02	ci left: 7.243132e-01	ci right 7.417508e-01	k: 7331	n:10000
RGS16   10000 perm   1 sec   (6923 perm/sec)   p_kst 7.331000e-01   p_cons 4.110000e-01   p_joint 9.745000e-01

Outputting figure to mutsig2_images.part000000000146/RGS16.2_629_10000_0.7331_0.411_0.9745.png
                gene_name: RGS16
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 87 percent done.
RGS17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.798921e-02	ci left: 6.529346e-01	ci right 6.715708e-01	k: 6623	n:10000
KS ci ratio: 3.347034e-02	ci left: 5.685494e-01	ci right 5.880049e-01	k: 5783	n:10000
RGS17   10000 perm   1 sec   (7072 perm/sec)   p_kst 5.783000e-01   p_cons 6.623000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RGS17.2_649_10000_0.5783_0.6623_1.png
                gene_name: RGS17
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
RGS18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.336195e-02	ci left: 7.291621e-01	ci right 7.464992e-01	k: 7379	n:10000
KS ci ratio: 1.257135e-02	ci left: 9.009330e-01	ci right 9.124288e-01	k: 9068	n:10000
RGS18   10000 perm   2 sec   (6001 perm/sec)   p_kst 9.068000e-01   p_cons 7.379000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RGS18.2_728_10000_0.9068_0.7379_1.png
                gene_name: RGS18
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
RGS21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.216342e-02	ci left: 5.879114e-01	ci right 6.072317e-01	k: 5976	n:10000
KS ci ratio: 1.040927e-02	ci left: 9.291629e-01	ci right 9.389824e-01	k: 9342	n:10000
RGS21   10000 perm   1 sec   (6976 perm/sec)   p_kst 9.342000e-01   p_cons 5.976000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RGS21.2_475_10000_0.9342_0.5976_1.png
                gene_name: RGS21
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
RGS7BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.355019e-02	ci left: 3.394541e-01	ci right 3.582340e-01	k: 3488	n:10000
Cons ci ratio: 1.864034e-02	ci left: 8.078575e-01	ci right 8.231582e-01	k: 8156	n:10000
KS ci ratio: 6.367975e-02	ci left: 2.659681e-01	ci right 2.835633e-01	k: 2747	n:10000
RGS7BP   10000 perm   2 sec   (5977 perm/sec)   p_kst 2.747000e-01   p_cons 8.156000e-01   p_joint 3.488000e-01

Outputting figure to mutsig2_images.part000000000146/RGS7BP.2_798_10000_0.2747_0.8156_0.3488.png
                gene_name: RGS7BP
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 95 percent done.
RHAG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.948898e-02	ci left: 2.329402e-01	ci right 2.498108e-01	k: 2413	n:10000
Cons ci ratio: 3.695388e-02	ci left: 5.195598e-01	ci right 5.392231e-01	k: 5294	n:10000
KS ci ratio: 1.096042e-01	ci left: 1.071510e-01	ci right 1.196752e-01	k: 1133	n:10000
RHAG   10000 perm   2 sec   (6036 perm/sec)   p_kst 1.133000e-01   p_cons 5.294000e-01   p_joint 2.413000e-01

Joint ci ratio: 6.710457e-02	ci left: 1.408372e-01	ci right 1.506660e-01	k: 2914	n:20000
Cons ci ratio: 2.615838e-02	ci left: 5.219533e-01	ci right 5.358383e-01	k: 10578	n:20000
KS ci ratio: 7.725382e-02	ci left: 1.096268e-01	ci right 1.184858e-01	k: 2280	n:20000
RHAG   20000 perm   4 sec   (5242 perm/sec)   p_kst 1.140000e-01   p_cons 5.289000e-01   p_joint 1.457000e-01

Outputting figure to mutsig2_images.part000000000146/RHAG.2_1270_20000_0.114_0.5289_0.1457.png
                gene_name: RHAG
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 96 percent done.
RHBDF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.623040e-02	ci left: 6.815364e-01	ci right 6.997525e-01	k: 6907	n:10000
KS ci ratio: 6.184739e-03	ci left: 9.725959e-01	ci right 9.787227e-01	k: 9758	n:10000
RHBDF1   10000 perm   2 sec   (6111 perm/sec)   p_kst 9.758000e-01   p_cons 6.907000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000146/RHBDF1.2_2636_10000_0.9758_0.6907_1.png
                gene_name: RHBDF1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
RHOC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.563048e-02	ci left: 6.914151e-01	ci right 7.094680e-01	k: 7005	n:10000
Cons ci ratio: 1.646934e-02	ci left: 8.428497e-01	ci right 8.569458e-01	k: 8500	n:10000
KS ci ratio: 6.157470e-02	ci left: 2.794346e-01	ci right 2.972888e-01	k: 2883	n:10000
RHOC   10000 perm   1 sec   (6860 perm/sec)   p_kst 2.883000e-01   p_cons 8.500000e-01   p_joint 7.005000e-01

Outputting figure to mutsig2_images.part000000000146/RHOC.2_598_10000_0.2883_0.85_0.7005.png
                gene_name: RHOC
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000146
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 146 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1701>
Subject: Job 9894111: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1701>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000147> was used as the working directory.
Started at Sat Oct  6 00:27:23 2012
Results reported at Sat Oct  6 02:03:20 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000147.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000147.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 147  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000147.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   5837.40 sec.
    Max Memory :      5130 MB
    Max Swap   :      7644 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
147
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 147
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 147: processing genes 13163 - 13252
Calculating significance of each gene.
Using projection method.
13163	RHOD	1
13164	RHOF	4.958349e-01
13165	RHOG	1
13166	RHOH	2.676216e-01
13167	RHOJ	7.625072e-02
13168	RHOQ	1
13169	RHOT1	3.106797e-01
13170	RHOT2	1
13171	RHOU	1
13172	RHOV	1
13173	RHOXF1	2.891265e-01
13174	RHOXF2	1
13175	RHOXF2B	2.358056e-01
13176	RHPN1	1
13177	RHPN2	4.338438e-01
13178	RIBC1	5.111423e-01
13179	RIBC2	5.169000e-01
13180	RIC3	8.466308e-01
13181	RIC8A	5.857518e-01
In gene RIC8B the following bins exceed PROBCAP:
    READ-AG-3608	categ 6	N = 1599    n = 1	mu =   1.38e-07
13182	RIC8B	1.427131e-01
13183	RICH2	1
In gene RICTOR the following bins exceed PROBCAP:
    COAD-AA-3552	categ 6	N = 5219    n = 1	mu =   1.38e-07
13184	RICTOR	2.077297e-01
13185	RIF1	1.560027e-01
13186	RILP	1.768712e-02
13187	RILPL1	1
13188	RILPL2	2.019000e-01
13189	RIMBP2	2.811002e-03
13190	RIMBP3	5.612366e-01
13191	RIMKLA	1.788798e-01
13192	RIMKLB	1.791818e-01
13193	RIMS1	2.418164e-03
13194	RIMS2	1.224760e-02
13195	RIMS3	1.132202e-01
13196	RIMS4	8.774894e-02
13197	RIN1	1
13198	RIN2	9.939437e-01
13199	RIN3	7.327688e-01
13200	RING1	5.911833e-01
13201	RINL	6.667585e-01
13202	RINT1	4.749537e-01
13203	RIOK1	6.859051e-01
13204	RIOK2	1.498349e-01
13205	RIOK3	7.481080e-01
13206	RIPK1	7.221197e-01
13207	RIPK2	4.211956e-01
In gene RIPK3 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 1597    n = 1	mu =   8.55e-07
13208	RIPK3	1.176268e-01
13209	RIPK4	7.087419e-01
13210	RIPPLY1	1
13211	RIPPLY2	5.590806e-02
13212	RIT1	2.254394e-01
13213	RIT2	4.699073e-02
13214	RLBP1	9.500115e-02
13215	RLF	2.789151e-01
13216	RLIM	2.577377e-01
13217	RLN1	6.764513e-01
13218	RLN2	2.113936e-01
13219	RLN3	1
13220	RLTPR	9.759655e-01
13221	RMI1	6.670466e-01
13222	RMND1	1
13223	RMND5A	1
13224	RMND5B	1.199417e-01
13225	RNASE1	2.243521e-01
13226	RNASE10	5.834117e-01
13227	RNASE11	2.908679e-04
13228	RNASE12	1
13229	RNASE13	1
13230	RNASE2	1.734125e-01
13231	RNASE3	5.446108e-01
13232	RNASE4	4.243945e-01
13233	RNASE6	4.972978e-01
13234	RNASE7	1.207990e-01
13235	RNASE8	3.816084e-01
13236	RNASE9	3.240119e-01
13237	RNASEH1	1
13238	RNASEH2A	5.183714e-01
13239	RNASEH2B	1
13240	RNASEH2C	1
13241	RNASEK	1
13242	RNASEL	5.525729e-01
13243	RNASEN	1
13244	RNASET2	1.179190e-01
13245	RND1	5.317750e-01
13246	RND2	5.915919e-01
13247	RND3	5.429850e-01
13248	RNF10	4.728043e-01
13249	RNF103	1.257762e-01
13250	RNF11	5.921633e-01
In gene RNF111 the following bins exceed PROBCAP:
    COAD-AA-3852	categ 6	N = 3013    n = 1	mu =   3.62e-07
13251	RNF111	2.192055e-01
13252	RNF112	9.384987e-01
Done

Running MutSig 2:
Scatter job 147: processing genes 13163 - 13252
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RIMS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.409225e-02	ci left: 8.791989e-01	ci right 8.917756e-01	k: 8856	n:10000
Cons ci ratio: 2.373042e-02	ci left: 7.230002e-01	ci right 7.404646e-01	k: 7318	n:10000
KS ci ratio: 2.474777e-02	ci left: 7.060407e-01	ci right 7.238339e-01	k: 7150	n:10000
RIMS1   10000 perm   3 sec   (3508 perm/sec)   p_kst 7.150000e-01   p_cons 7.318000e-01   p_joint 8.856000e-01

Outputting figure to mutsig2_images.part000000000147/RIMS1.21_5378_10000_0.715_0.7318_0.8856.png
                gene_name: RIMS1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 2 percent done.
RIMS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.566195e-01	ci left: 1.987038e-02	ci right 2.581208e-02	k: 227	n:10000
Cons ci ratio: 1.213559e-02	ci left: 9.068938e-01	ci right 9.180646e-01	k: 9126	n:10000
KS ci ratio: 5.177092e-01	ci left: 4.232871e-03	ci right 7.265981e-03	k: 56	n:10000
RIMS2   10000 perm   3 sec   (3976 perm/sec)   p_kst 5.600000e-03   p_cons 9.126000e-01   p_joint 2.270000e-02

Joint ci ratio: 1.802519e-01	ci left: 2.101484e-02	ci right 2.522538e-02	k: 461	n:20000
Cons ci ratio: 7.814728e-03	ci left: 9.226938e-01	ci right 9.299817e-01	k: 18528	n:20000
KS ci ratio: 3.567614e-01	ci left: 4.931479e-03	ci right 7.115892e-03	k: 119	n:20000
RIMS2   20000 perm   5 sec   (3649 perm/sec)   p_kst 5.950000e-03   p_cons 9.264000e-01   p_joint 2.305000e-02

Joint ci ratio: 1.597865e-01	ci left: 1.809339e-02	ci right 2.126726e-02	k: 589	n:30000
Cons ci ratio: 6.375516e-03	ci left: 9.234889e-01	ci right 9.294282e-01	k: 27795	n:30000
KS ci ratio: 2.873094e-01	ci left: 5.281277e-03	ci right 7.083037e-03	k: 184	n:30000
RIMS2   30000 perm   9 sec   (3528 perm/sec)   p_kst 6.133333e-03   p_cons 9.265000e-01   p_joint 1.963333e-02

Joint ci ratio: 1.316003e-01	ci left: 2.027025e-02	ci right 2.314977e-02	k: 867	n:40000
Cons ci ratio: 5.562569e-03	ci left: 9.228578e-01	ci right 9.280302e-01	k: 37019	n:40000
KS ci ratio: 2.522715e-01	ci left: 5.243302e-03	ci right 6.779744e-03	k: 239	n:40000
RIMS2   40000 perm   12 sec   (3448 perm/sec)   p_kst 5.975000e-03   p_cons 9.254750e-01   p_joint 2.167500e-02

Joint ci ratio: 1.195214e-01	ci left: 1.979990e-02	ci right 2.233613e-02	k: 1052	n:50000
Cons ci ratio: 4.963468e-03	ci left: 9.234679e-01	ci right 9.280826e-01	k: 46290	n:50000
KS ci ratio: 2.223087e-01	ci left: 5.492974e-03	ci right 6.885294e-03	k: 308	n:50000
RIMS2   50000 perm   15 sec   (3380 perm/sec)   p_kst 6.160000e-03   p_cons 9.258000e-01   p_joint 2.104000e-02

Joint ci ratio: 1.115021e-01	ci left: 1.905681e-02	ci right 2.132327e-02	k: 1210	n:60000
Cons ci ratio: 4.853870e-03	ci left: 9.135158e-01	ci right 9.179772e-01	k: 54946	n:60000
KS ci ratio: 2.007183e-01	ci left: 5.682544e-03	ci right 6.965912e-03	k: 378	n:60000
RIMS2   60000 perm   18 sec   (3279 perm/sec)   p_kst 6.300000e-03   p_cons 9.157667e-01   p_joint 2.016667e-02

Joint ci ratio: 9.868702e-02	ci left: 2.095396e-02	ci right 2.314305e-02	k: 1542	n:70000
Cons ci ratio: 4.495294e-03	ci left: 9.136318e-01	ci right 9.177622e-01	k: 64100	n:70000
KS ci ratio: 1.882362e-01	ci left: 5.577438e-03	ci right 6.749779e-03	k: 430	n:70000
RIMS2   70000 perm   22 sec   (3232 perm/sec)   p_kst 6.142857e-03   p_cons 9.157143e-01   p_joint 2.202857e-02

Joint ci ratio: 8.805241e-02	ci left: 2.310948e-02	ci right 2.525022e-02	k: 1933	n:80000
Cons ci ratio: 4.209747e-03	ci left: 9.135892e-01	ci right 9.174556e-01	k: 73243	n:80000
KS ci ratio: 1.749341e-01	ci left: 5.691693e-03	ci right 6.794575e-03	k: 498	n:80000
RIMS2   80000 perm   25 sec   (3189 perm/sec)   p_kst 6.225000e-03   p_cons 9.155375e-01   p_joint 2.416250e-02

Joint ci ratio: 8.743714e-02	ci left: 2.088845e-02	ci right 2.280920e-02	k: 1965	n:90000
Cons ci ratio: 3.971639e-03	ci left: 9.135966e-01	ci right 9.172433e-01	k: 82389	n:90000
KS ci ratio: 1.652817e-01	ci left: 5.697583e-03	ci right 6.734630e-03	k: 558	n:90000
RIMS2   90000 perm   29 sec   (3131 perm/sec)   p_kst 6.200000e-03   p_cons 9.154333e-01   p_joint 2.183333e-02

Joint ci ratio: 8.494847e-02	ci left: 1.996355e-02	ci right 2.174439e-02	k: 2084	n:100000
Cons ci ratio: 3.758151e-03	ci left: 9.140921e-01	ci right 9.175437e-01	k: 91583	n:100000
KS ci ratio: 1.569414e-01	ci left: 5.713245e-03	ci right 6.695727e-03	k: 619	n:100000
RIMS2   100000 perm   32 sec   (3095 perm/sec)   p_kst 6.190000e-03   p_cons 9.158300e-01   p_joint 2.084000e-02

Joint ci ratio: 8.459745e-02	ci left: 1.833489e-02	ci right 1.996333e-02	k: 2105	n:110000
Cons ci ratio: 3.580771e-03	ci left: 9.142810e-01	ci right 9.175697e-01	k: 100753	n:110000
KS ci ratio: 1.503046e-01	ci left: 5.683379e-03	ci right 6.615675e-03	k: 675	n:110000
RIMS2   110000 perm   36 sec   (3060 perm/sec)   p_kst 6.136364e-03   p_cons 9.159364e-01   p_joint 1.913636e-02

Joint ci ratio: 8.804595e-02	ci left: 1.553403e-02	ci right 1.697282e-02	k: 1949	n:120000
Cons ci ratio: 3.428570e-03	ci left: 9.143407e-01	ci right 9.174892e-01	k: 109911	n:120000
KS ci ratio: 1.436565e-01	ci left: 5.723498e-03	ci right 6.617287e-03	k: 739	n:120000
RIMS2   120000 perm   40 sec   (3026 perm/sec)   p_kst 6.158333e-03   p_cons 9.159250e-01   p_joint 1.624167e-02

Joint ci ratio: 8.460202e-02	ci left: 1.555836e-02	ci right 1.694026e-02	k: 2111	n:130000
Cons ci ratio: 3.297221e-03	ci left: 9.142541e-01	ci right 9.172812e-01	k: 119051	n:130000
KS ci ratio: 1.376469e-01	ci left: 5.773070e-03	ci right 6.633795e-03	k: 805	n:130000
RIMS2   130000 perm   44 sec   (2984 perm/sec)   p_kst 6.192308e-03   p_cons 9.157769e-01   p_joint 1.623846e-02

Joint ci ratio: 8.219686e-02	ci left: 1.532821e-02	ci right 1.664909e-02	k: 2237	n:140000
Cons ci ratio: 3.177094e-03	ci left: 9.143188e-01	ci right 9.172354e-01	k: 128210	n:140000
KS ci ratio: 1.324864e-01	ci left: 5.802412e-03	ci right 6.632524e-03	k: 869	n:140000
RIMS2   140000 perm   47 sec   (2950 perm/sec)   p_kst 6.207143e-03   p_cons 9.157857e-01   p_joint 1.597857e-02

Joint ci ratio: 8.098325e-02	ci left: 1.475676e-02	ci right 1.600874e-02	k: 2306	n:150000
Cons ci ratio: 3.068809e-03	ci left: 9.143968e-01	ci right 9.172138e-01	k: 137372	n:150000
KS ci ratio: 1.271826e-01	ci left: 5.892916e-03	ci right 6.699680e-03	k: 943	n:150000
RIMS2   150000 perm   51 sec   (2916 perm/sec)   p_kst 6.286667e-03   p_cons 9.158133e-01   p_joint 1.537333e-02

Joint ci ratio: 8.150809e-02	ci left: 1.366883e-02	ci right 1.483637e-02	k: 2279	n:160000
Cons ci ratio: 2.968000e-03	ci left: 9.146176e-01	ci right 9.173423e-01	k: 146558	n:160000
KS ci ratio: 1.230171e-01	ci left: 5.918151e-03	ci right 6.699900e-03	k: 1008	n:160000
RIMS2   160000 perm   55 sec   (2884 perm/sec)   p_kst 6.300000e-03   p_cons 9.159875e-01   p_joint 1.424375e-02

Joint ci ratio: 8.095101e-02	ci left: 1.305479e-02	ci right 1.416189e-02	k: 2312	n:170000
Cons ci ratio: 2.880575e-03	ci left: 9.145943e-01	ci right 9.172385e-01	k: 155707	n:170000
KS ci ratio: 1.191242e-01	ci left: 5.952214e-03	ci right 6.711828e-03	k: 1075	n:170000
RIMS2   170000 perm   60 sec   (2852 perm/sec)   p_kst 6.323529e-03   p_cons 9.159235e-01   p_joint 1.360000e-02

Joint ci ratio: 7.531243e-02	ci left: 1.426902e-02	ci right 1.539113e-02	k: 2668	n:180000
Cons ci ratio: 2.804078e-03	ci left: 9.143734e-01	ci right 9.169465e-01	k: 164820	n:180000
KS ci ratio: 1.160911e-01	ci left: 5.928882e-03	ci right 6.664932e-03	k: 1132	n:180000
RIMS2   180000 perm   64 sec   (2822 perm/sec)   p_kst 6.288889e-03   p_cons 9.156667e-01   p_joint 1.482222e-02

Joint ci ratio: 7.587748e-02	ci left: 1.332672e-02	ci right 1.438293e-02	k: 2631	n:190000
Cons ci ratio: 2.735575e-03	ci left: 9.140496e-01	ci right 9.165587e-01	k: 173909	n:190000
KS ci ratio: 1.125197e-01	ci left: 5.990073e-03	ci right 6.709324e-03	k: 1205	n:190000
RIMS2   190000 perm   68 sec   (2792 perm/sec)   p_kst 6.342105e-03   p_cons 9.153105e-01   p_joint 1.384737e-02

Joint ci ratio: 7.483103e-02	ci left: 1.302824e-02	ci right 1.404593e-02	k: 2706	n:200000
Cons ci ratio: 2.666659e-03	ci left: 9.140611e-01	ci right 9.165068e-01	k: 183058	n:200000
KS ci ratio: 1.090018e-01	ci left: 6.074642e-03	ci right 6.779779e-03	k: 1284	n:200000
RIMS2   200000 perm   72 sec   (2763 perm/sec)   p_kst 6.420000e-03   p_cons 9.152900e-01   p_joint 1.353000e-02

Joint ci ratio: 7.430131e-02	ci left: 1.259467e-02	ci right 1.357122e-02	k: 2746	n:210000
Cons ci ratio: 2.602542e-03	ci left: 9.140818e-01	ci right 9.164686e-01	k: 192209	n:210000
KS ci ratio: 1.063452e-01	ci left: 6.086563e-03	ci right 6.774786e-03	k: 1349	n:210000
RIMS2   210000 perm   77 sec   (2735 perm/sec)   p_kst 6.423810e-03   p_cons 9.152810e-01   p_joint 1.307619e-02

Joint ci ratio: 7.368795e-02	ci left: 1.223178e-02	ci right 1.317203e-02	k: 2793	n:220000
Cons ci ratio: 2.543285e-03	ci left: 9.140739e-01	ci right 9.164061e-01	k: 201354	n:220000
KS ci ratio: 1.042451e-01	ci left: 6.053312e-03	ci right 6.723430e-03	k: 1404	n:220000
RIMS2   220000 perm   81 sec   (2708 perm/sec)   p_kst 6.381818e-03   p_cons 9.152455e-01   p_joint 1.269545e-02

Joint ci ratio: 7.184436e-02	ci left: 1.231895e-02	ci right 1.324122e-02	k: 2938	n:230000
Cons ci ratio: 2.487203e-03	ci left: 9.141109e-01	ci right 9.163916e-01	k: 210509	n:230000
KS ci ratio: 1.020539e-01	ci left: 6.048499e-03	ci right 6.703165e-03	k: 1465	n:230000
RIMS2   230000 perm   86 sec   (2681 perm/sec)   p_kst 6.369565e-03   p_cons 9.152565e-01   p_joint 1.277391e-02

Joint ci ratio: 7.071553e-02	ci left: 1.219441e-02	ci right 1.309242e-02	k: 3033	n:240000
Cons ci ratio: 2.434608e-03	ci left: 9.141496e-01	ci right 9.163820e-01	k: 219665	n:240000
KS ci ratio: 1.001605e-01	ci left: 6.023907e-03	ci right 6.663103e-03	k: 1521	n:240000
RIMS2   240000 perm   90 sec   (2653 perm/sec)   p_kst 6.337500e-03   p_cons 9.152708e-01   p_joint 1.263750e-02

Joint ci ratio: 6.899350e-02	ci left: 1.230797e-02	ci right 1.319138e-02	k: 3186	n:250000
Cons ci ratio: 2.386507e-03	ci left: 9.141012e-01	ci right 9.162892e-01	k: 228800	n:250000
KS ci ratio: 9.840004e-02	ci left: 5.997484e-03	ci right 6.622045e-03	k: 1576	n:250000
RIMS2   250000 perm   95 sec   (2624 perm/sec)   p_kst 6.304000e-03   p_cons 9.152000e-01   p_joint 1.274400e-02

Outputting figure to mutsig2_images.part000000000147/RIMS2.18_4342_250000_0.006304_0.9152_0.012744.png
                gene_name: RIMS2
               theta_stop: 0.098 
                    nperm: 250000 
                     p_ks: 0.0063 
        ci_ks_bounds_left: 0.0060 
       ci_ks_bounds_right: 0.0066 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 4 percent done.
RIMBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.243504e-03	ci left: 9.428427e-01	ci right 9.516945e-01	k: 9474	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
RIMBP2   10000 perm   2 sec   (4464 perm/sec)   p_kst 1   p_cons 9.474000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RIMBP2.16_3227_10000_1_0.9474_1.png
                gene_name: RIMBP2
               theta_stop: 0.0092 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
RLF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.033904e-02	ci left: 7.797545e-01	ci right 7.958775e-01	k: 7879	n:10000
KS ci ratio: 1.692518e-02	ci left: 8.356181e-01	ci right 8.499816e-01	k: 8429	n:10000
RLF   10000 perm   3 sec   (3905 perm/sec)   p_kst 8.429000e-01   p_cons 7.879000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RLF.15_5777_10000_0.8429_0.7879_1.png
                gene_name: RLF
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
RIF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.604104e-02	ci left: 8.495769e-01	ci right 8.634147e-01	k: 8566	n:10000
Cons ci ratio: 5.495838e-02	ci left: 3.278334e-01	ci right 3.464615e-01	k: 3371	n:10000
KS ci ratio: 9.289701e-03	ci left: 9.423233e-01	ci right 9.512142e-01	k: 9469	n:10000
RIF1   10000 perm   3 sec   (3419 perm/sec)   p_kst 9.469000e-01   p_cons 3.371000e-01   p_joint 8.566000e-01

Outputting figure to mutsig2_images.part000000000147/RIF1.14_7559_10000_0.9469_0.3371_0.8566.png
                gene_name: RIF1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 10 percent done.
RICTOR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.837274e-02	ci left: 3.866946e-01	ci right 4.059658e-01	k: 3963	n:10000
Cons ci ratio: 3.012213e-02	ci left: 6.191440e-01	ci right 6.381810e-01	k: 6287	n:10000
KS ci ratio: 5.942548e-02	ci left: 2.941004e-01	ci right 3.122144e-01	k: 3031	n:10000
RICTOR   10000 perm   2 sec   (4292 perm/sec)   p_kst 3.031000e-01   p_cons 6.287000e-01   p_joint 3.963000e-01

Outputting figure to mutsig2_images.part000000000147/RICTOR.13_5279_10000_0.3031_0.6287_0.3963.png
                gene_name: RICTOR
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 12 percent done.
RLBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.293342e-02	ci left: 7.363367e-01	ci right 7.535204e-01	k: 7450	n:10000
Cons ci ratio: 1.570014e-02	ci left: 8.548806e-01	ci right 8.685080e-01	k: 8618	n:10000
KS ci ratio: 3.283636e-02	ci left: 5.778774e-01	ci right 5.972716e-01	k: 5876	n:10000
RLBP1   10000 perm   2 sec   (5752 perm/sec)   p_kst 5.876000e-01   p_cons 8.618000e-01   p_joint 7.450000e-01

Outputting figure to mutsig2_images.part000000000147/RLBP1.6_982_10000_0.5876_0.8618_0.745.png
                gene_name: RLBP1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 13 percent done.
RMI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.702516e-02	ci left: 6.685399e-01	ci right 6.869564e-01	k: 6778	n:10000
Cons ci ratio: 2.690770e-02	ci left: 6.704536e-01	ci right 6.888416e-01	k: 6797	n:10000
KS ci ratio: 3.700582e-02	ci left: 5.188592e-01	ci right 5.385241e-01	k: 5287	n:10000
RMI1   10000 perm   2 sec   (5898 perm/sec)   p_kst 5.287000e-01   p_cons 6.797000e-01   p_joint 6.778000e-01

Outputting figure to mutsig2_images.part000000000147/RMI1.6_1882_10000_0.5287_0.6797_0.6778.png
                gene_name: RMI1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 15 percent done.
RNF103
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.305635e-02	ci left: 1.436425e-01	ci right 1.577616e-01	k: 1506	n:10000
Cons ci ratio: 1.496550e-01	ci left: 5.937693e-02	ci right 6.907883e-02	k: 641	n:10000
KS ci ratio: 5.752610e-02	ci left: 3.078845e-01	ci right 3.262222e-01	k: 3170	n:10000
RNF103   10000 perm   2 sec   (5220 perm/sec)   p_kst 3.170000e-01   p_cons 6.410000e-02   p_joint 1.506000e-01

Joint ci ratio: 7.892335e-02	ci left: 1.054499e-01	ci right 1.141639e-01	k: 2195	n:20000
Cons ci ratio: 1.064906e-01	ci left: 6.006147e-02	ci right 6.686612e-02	k: 1268	n:20000
KS ci ratio: 4.236086e-02	ci left: 2.934050e-01	ci right 3.061533e-01	k: 5995	n:20000
RNF103   20000 perm   4 sec   (4721 perm/sec)   p_kst 2.997500e-01   p_cons 6.340000e-02   p_joint 1.097500e-01

Joint ci ratio: 5.872068e-02	ci left: 1.255225e-01	ci right 1.331494e-01	k: 3879	n:30000
Cons ci ratio: 8.723155e-02	ci left: 6.030907e-02	ci right 6.584259e-02	k: 1891	n:30000
KS ci ratio: 3.469493e-02	ci left: 2.932917e-01	ci right 3.036806e-01	k: 8954	n:30000
RNF103   30000 perm   7 sec   (4552 perm/sec)   p_kst 2.984667e-01   p_cons 6.303333e-02   p_joint 1.293000e-01

Outputting figure to mutsig2_images.part000000000147/RNF103.6_2074_30000_0.29847_0.063033_0.1293.png
                gene_name: RNF103
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 17 percent done.
RHPN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.389760e-02	ci left: 5.623328e-01	ci right 5.818252e-01	k: 5721	n:10000
Cons ci ratio: 2.332572e-02	ci left: 7.297682e-01	ci right 7.470927e-01	k: 7385	n:10000
KS ci ratio: 5.358556e-02	ci left: 3.391561e-01	ci right 3.579322e-01	k: 3485	n:10000
RHPN2   10000 perm   2 sec   (5991 perm/sec)   p_kst 3.485000e-01   p_cons 7.385000e-01   p_joint 5.721000e-01

Outputting figure to mutsig2_images.part000000000147/RHPN2.5_2121_10000_0.3485_0.7385_0.5721.png
                gene_name: RHPN2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 19 percent done.
RIC8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.307401e-02	ci left: 5.743665e-01	ci right 5.937845e-01	k: 5841	n:10000
Cons ci ratio: 1.310676e-02	ci left: 8.934402e-01	ci right 9.053260e-01	k: 8995	n:10000
KS ci ratio: 4.989186e-02	ci left: 3.720645e-01	ci right 3.912045e-01	k: 3816	n:10000
RIC8B   10000 perm   2 sec   (5533 perm/sec)   p_kst 3.816000e-01   p_cons 8.995000e-01   p_joint 5.841000e-01

Outputting figure to mutsig2_images.part000000000147/RIC8B.5_1599_10000_0.3816_0.8995_0.5841.png
                gene_name: RIC8B
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 21 percent done.
RIN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.422738e-02	ci left: 2.626030e-01	ci right 2.801304e-01	k: 2713	n:10000
Cons ci ratio: 2.732877e-02	ci left: 6.636054e-01	ci right 6.820938e-01	k: 6729	n:10000
KS ci ratio: 8.335471e-02	ci left: 1.734975e-01	ci right 1.886888e-01	k: 1810	n:10000
RIN3   10000 perm   2 sec   (4985 perm/sec)   p_kst 1.810000e-01   p_cons 6.729000e-01   p_joint 2.713000e-01

Outputting figure to mutsig2_images.part000000000147/RIN3.5_2998_10000_0.181_0.6729_0.2713.png
                gene_name: RIN3
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 23 percent done.
RLIM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.286912e-01	ci left: 7.941135e-02	ci right 9.043186e-02	k: 848	n:10000
Cons ci ratio: 1.206707e-02	ci left: 9.078193e-01	ci right 9.189385e-01	k: 9135	n:10000
KS ci ratio: 2.676375e-01	ci left: 1.818649e-02	ci right 2.389730e-02	k: 209	n:10000
RLIM   10000 perm   2 sec   (5787 perm/sec)   p_kst 2.090000e-02   p_cons 9.135000e-01   p_joint 8.480000e-02

Joint ci ratio: 1.209472e-01	ci left: 4.687441e-02	ci right 5.295730e-02	k: 997	n:20000
Cons ci ratio: 8.498704e-03	ci left: 9.101310e-01	ci right 9.179481e-01	k: 18282	n:20000
KS ci ratio: 1.978447e-01	ci left: 1.734330e-02	ci right 2.119826e-02	k: 384	n:20000
RLIM   20000 perm   4 sec   (5134 perm/sec)   p_kst 1.920000e-02   p_cons 9.141000e-01   p_joint 4.985000e-02

Joint ci ratio: 7.667880e-02	ci left: 7.705243e-02	ci right 8.322917e-02	k: 2403	n:30000
Cons ci ratio: 6.960788e-03	ci left: 9.103639e-01	ci right 9.167557e-01	k: 27408	n:30000
KS ci ratio: 1.642437e-01	ci left: 1.710123e-02	ci right 2.019299e-02	k: 558	n:30000
RLIM   30000 perm   6 sec   (4912 perm/sec)   p_kst 1.860000e-02   p_cons 9.136000e-01   p_joint 8.010000e-02

Joint ci ratio: 8.031989e-02	ci left: 5.393828e-02	ci right 5.847642e-02	k: 2247	n:40000
Cons ci ratio: 6.016572e-03	ci left: 9.111084e-01	ci right 9.166313e-01	k: 36556	n:40000
KS ci ratio: 1.437540e-01	ci left: 1.693670e-02	ci right 1.958390e-02	k: 729	n:40000
RLIM   40000 perm   8 sec   (4776 perm/sec)   p_kst 1.822500e-02   p_cons 9.139000e-01   p_joint 5.617500e-02

Joint ci ratio: 7.651088e-02	ci left: 4.796838e-02	ci right 5.180410e-02	k: 2493	n:50000
Cons ci ratio: 5.403135e-03	ci left: 9.107589e-01	ci right 9.157130e-01	k: 45663	n:50000
KS ci ratio: 1.285419e-01	ci left: 1.708509e-02	ci right 1.945132e-02	k: 912	n:50000
RLIM   50000 perm   11 sec   (4662 perm/sec)   p_kst 1.824000e-02   p_cons 9.132600e-01   p_joint 4.986000e-02

Joint ci ratio: 7.117890e-02	ci left: 4.640141e-02	ci right 4.984247e-02	k: 2886	n:60000
Cons ci ratio: 4.925349e-03	ci left: 9.112055e-01	ci right 9.157211e-01	k: 54809	n:60000
KS ci ratio: 1.177591e-01	ci left: 1.706450e-02	ci right 1.921580e-02	k: 1087	n:60000
RLIM   60000 perm   13 sec   (4563 perm/sec)   p_kst 1.811667e-02   p_cons 9.134833e-01   p_joint 4.810000e-02

Joint ci ratio: 6.414901e-02	ci left: 4.901597e-02	ci right 5.227855e-02	k: 3544	n:70000
Cons ci ratio: 4.555756e-03	ci left: 9.115233e-01	ci right 9.156995e-01	k: 63954	n:70000
KS ci ratio: 1.093019e-01	ci left: 1.705578e-02	ci right 1.904160e-02	k: 1262	n:70000
RLIM   70000 perm   16 sec   (4476 perm/sec)   p_kst 1.802857e-02   p_cons 9.136286e-01   p_joint 5.062857e-02

Joint ci ratio: 6.414515e-02	ci left: 4.316756e-02	ci right 4.604058e-02	k: 3567	n:80000
Cons ci ratio: 4.264287e-03	ci left: 9.115561e-01	ci right 9.154639e-01	k: 73082	n:80000
KS ci ratio: 1.021141e-01	ci left: 1.716309e-02	ci right 1.902209e-02	k: 1446	n:80000
RLIM   80000 perm   18 sec   (4399 perm/sec)   p_kst 1.807500e-02   p_cons 9.135250e-01   p_joint 4.458750e-02

Joint ci ratio: 6.754041e-02	ci left: 3.485793e-02	ci right 3.730543e-02	k: 3246	n:90000
Cons ci ratio: 4.018479e-03	ci left: 9.117456e-01	ci right 9.154277e-01	k: 82224	n:90000
KS ci ratio: 9.627037e-02	ci left: 1.721734e-02	ci right 1.896947e-02	k: 1627	n:90000
RLIM   90000 perm   21 sec   (4323 perm/sec)   p_kst 1.807778e-02   p_cons 9.136000e-01   p_joint 3.606667e-02

Outputting figure to mutsig2_images.part000000000147/RLIM.5_1887_90000_0.018078_0.9136_0.036067.png
                gene_name: RLIM
               theta_stop: 0.096 
                    nperm: 90000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.037 

Current progress: 25 percent done.
RMND5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.926953e-02	ci left: 7.975022e-01	ci right 8.131196e-01	k: 8054	n:10000
Cons ci ratio: 5.709069e-02	ci left: 3.111584e-01	ci right 3.295464e-01	k: 3203	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
RMND5B   10000 perm   2 sec   (5903 perm/sec)   p_kst 1   p_cons 3.203000e-01   p_joint 8.054000e-01

Outputting figure to mutsig2_images.part000000000147/RMND5B.5_1218_10000_1_0.3203_0.8054.png
                gene_name: RMND5B
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 27 percent done.
RNASE11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.576724e-02	ci left: 3.213802e-01	ci right 3.399186e-01	k: 3306	n:10000
Cons ci ratio: 9.611774e-02	ci left: 1.357035e-01	ci right 1.495054e-01	k: 1425	n:10000
KS ci ratio: 2.834030e-02	ci left: 6.472993e-01	ci right 6.660094e-01	k: 6567	n:10000
RNASE11   10000 perm   2 sec   (6093 perm/sec)   p_kst 6.567000e-01   p_cons 1.425000e-01   p_joint 3.306000e-01

Outputting figure to mutsig2_images.part000000000147/RNASE11.5_604_10000_0.6567_0.1425_0.3306.png
                gene_name: RNASE11
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 29 percent done.
RNF111
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.561224e-01	ci left: 5.465342e-02	ci right 6.400534e-02	k: 592	n:10000
Cons ci ratio: 3.325900e-01	ci left: 1.142242e-02	ci right 1.606722e-02	k: 136	n:10000
KS ci ratio: 4.101545e-02	ci left: 4.674681e-01	ci right 4.871451e-01	k: 4773	n:10000
RNF111   10000 perm   2 sec   (4913 perm/sec)   p_kst 4.773000e-01   p_cons 1.360000e-02   p_joint 5.920000e-02

Joint ci ratio: 6.933349e-02	ci left: 1.330016e-01	ci right 1.426040e-01	k: 2755	n:20000
Cons ci ratio: 2.313597e-01	ci left: 1.251190e-02	ci right 1.583155e-02	k: 282	n:20000
KS ci ratio: 2.965778e-02	ci left: 4.592667e-01	ci right 4.731432e-01	k: 9324	n:20000
RNF111   20000 perm   4 sec   (4463 perm/sec)   p_kst 4.662000e-01   p_cons 1.410000e-02   p_joint 1.377500e-01

Joint ci ratio: 7.002916e-02	ci left: 9.124537e-02	ci right 9.790005e-02	k: 2836	n:30000
Cons ci ratio: 1.917907e-01	ci left: 1.241520e-02	ci right 1.508019e-02	k: 411	n:30000
KS ci ratio: 2.434954e-02	ci left: 4.578110e-01	ci right 4.691294e-01	k: 13904	n:30000
RNF111   30000 perm   7 sec   (4324 perm/sec)   p_kst 4.634667e-01   p_cons 1.370000e-02   p_joint 9.453333e-02

Joint ci ratio: 7.350813e-02	ci left: 6.392994e-02	ci right 6.883324e-02	k: 2654	n:40000
Cons ci ratio: 1.633056e-01	ci left: 1.303941e-02	ci right 1.538189e-02	k: 567	n:40000
KS ci ratio: 2.109255e-02	ci left: 4.584536e-01	ci right 4.682517e-01	k: 18534	n:40000
RNF111   40000 perm   10 sec   (4209 perm/sec)   p_kst 4.633500e-01   p_cons 1.417500e-02   p_joint 6.635000e-02

Joint ci ratio: 7.090937e-02	ci left: 5.555389e-02	ci right 5.965766e-02	k: 2879	n:50000
Cons ci ratio: 1.470134e-01	ci left: 1.298846e-02	ci right 1.506853e-02	k: 700	n:50000
KS ci ratio: 1.902639e-02	ci left: 4.547645e-01	ci right 4.635202e-01	k: 22957	n:50000
RNF111   50000 perm   12 sec   (4123 perm/sec)   p_kst 4.591400e-01   p_cons 1.400000e-02   p_joint 5.758000e-02

Joint ci ratio: 5.738893e-02	ci left: 7.007567e-02	ci right 7.423250e-02	k: 4328	n:60000
Cons ci ratio: 1.343828e-01	ci left: 1.304290e-02	ci right 1.493787e-02	k: 838	n:60000
KS ci ratio: 1.680050e-02	ci left: 4.716969e-01	ci right 4.797055e-01	k: 28542	n:60000
RNF111   60000 perm   15 sec   (4051 perm/sec)   p_kst 4.757000e-01   p_cons 1.396667e-02   p_joint 7.213333e-02

Joint ci ratio: 5.956977e-02	ci left: 5.651909e-02	ci right 6.000335e-02	k: 4077	n:70000
Cons ci ratio: 1.250530e-01	ci left: 1.297653e-02	ci right 1.472125e-02	k: 968	n:70000
KS ci ratio: 1.555475e-02	ci left: 4.719800e-01	ci right 4.793934e-01	k: 33298	n:70000
RNF111   70000 perm   18 sec   (3981 perm/sec)   p_kst 4.756857e-01   p_cons 1.382857e-02   p_joint 5.824286e-02

Joint ci ratio: 4.099650e-02	ci left: 1.004560e-01	ci right 1.046729e-01	k: 8204	n:80000
Cons ci ratio: 1.108631e-01	ci left: 1.453376e-02	ci right 1.625165e-02	k: 1230	n:80000
KS ci ratio: 1.458261e-02	ci left: 4.711094e-01	ci right 4.780424e-01	k: 37966	n:80000
RNF111   80000 perm   21 sec   (3901 perm/sec)   p_kst 4.745750e-01   p_cons 1.537500e-02   p_joint 1.025500e-01

Joint ci ratio: 3.985251e-02	ci left: 9.512896e-02	ci right 9.900817e-02	k: 8735	n:90000
Cons ci ratio: 1.045180e-01	ci left: 1.458396e-02	ci right 1.620305e-02	k: 1384	n:90000
KS ci ratio: 1.375286e-02	ci left: 4.711552e-01	ci right 4.776909e-01	k: 42698	n:90000
RNF111   90000 perm   24 sec   (3829 perm/sec)   p_kst 4.744222e-01   p_cons 1.537778e-02   p_joint 9.705556e-02

Joint ci ratio: 4.150375e-02	ci left: 8.019768e-02	ci right 8.360661e-02	k: 8189	n:100000
Cons ci ratio: 9.859929e-02	ci left: 1.479223e-02	ci right 1.633606e-02	k: 1555	n:100000
KS ci ratio: 1.304144e-02	ci left: 4.715408e-01	ci right 4.777407e-01	k: 47464	n:100000
RNF111   100000 perm   27 sec   (3751 perm/sec)   p_kst 4.746400e-01   p_cons 1.555000e-02   p_joint 8.189000e-02

Outputting figure to mutsig2_images.part000000000147/RNF111.5_3013_100000_0.47464_0.01555_0.08189.png
                gene_name: RNF111
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.084 

Current progress: 31 percent done.
RHOT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.376227e-01	ci left: 1.105573e-02	ci right 1.563427e-02	k: 132	n:10000
Cons ci ratio: 3.538158e-02	ci left: 5.411876e-01	ci right 5.607827e-01	k: 5510	n:10000
KS ci ratio: 6.109146e-01	ci left: 2.859150e-03	ci right 5.442922e-03	k: 40	n:10000
RHOT1   10000 perm   2 sec   (5727 perm/sec)   p_kst 4.000000e-03   p_cons 5.510000e-01   p_joint 1.320000e-02

Joint ci ratio: 1.780934e-01	ci left: 2.154068e-02	ci right 2.579935e-02	k: 472	n:20000
Cons ci ratio: 2.467071e-02	ci left: 5.510342e-01	ci right 5.648490e-01	k: 11159	n:20000
KS ci ratio: 4.145833e-01	ci left: 3.530379e-03	ci right 5.418154e-03	k: 88	n:20000
RHOT1   20000 perm   4 sec   (5129 perm/sec)   p_kst 4.400000e-03   p_cons 5.579500e-01   p_joint 2.360000e-02

Joint ci ratio: 1.897008e-01	ci left: 1.270105e-02	ci right 1.539427e-02	k: 420	n:30000
Cons ci ratio: 2.005090e-02	ci left: 5.545943e-01	ci right 5.658607e-01	k: 16807	n:30000
KS ci ratio: 3.471010e-01	ci left: 3.499882e-03	ci right 4.998632e-03	k: 126	n:30000
RHOT1   30000 perm   6 sec   (4911 perm/sec)   p_kst 4.200000e-03   p_cons 5.602333e-01   p_joint 1.400000e-02

Joint ci ratio: 1.606022e-01	ci left: 1.349541e-02	ci right 1.587581e-02	k: 586	n:40000
Cons ci ratio: 1.738534e-02	ci left: 5.547684e-01	ci right 5.645229e-01	k: 22386	n:40000
KS ci ratio: 3.027011e-01	ci left: 3.543725e-03	ci right 4.829897e-03	k: 166	n:40000
RHOT1   40000 perm   8 sec   (4767 perm/sec)   p_kst 4.150000e-03   p_cons 5.596500e-01   p_joint 1.465000e-02

Joint ci ratio: 1.716739e-01	ci left: 9.433540e-03	ci right 1.122400e-02	k: 515	n:50000
Cons ci ratio: 1.559392e-02	ci left: 5.538940e-01	ci right 5.626193e-01	k: 27913	n:50000
KS ci ratio: 2.699344e-01	ci left: 3.633436e-03	ci right 4.785298e-03	k: 209	n:50000
RHOT1   50000 perm   11 sec   (4646 perm/sec)   p_kst 4.180000e-03   p_cons 5.582600e-01   p_joint 1.030000e-02

Joint ci ratio: 1.647256e-01	ci left: 8.579401e-03	ci right 1.013528e-02	k: 560	n:60000
Cons ci ratio: 1.425580e-02	ci left: 5.535648e-01	ci right 5.615296e-01	k: 33453	n:60000
KS ci ratio: 2.484032e-01	ci left: 3.620114e-03	ci right 4.662083e-03	k: 247	n:60000
RHOT1   60000 perm   13 sec   (4537 perm/sec)   p_kst 4.116667e-03   p_cons 5.575500e-01   p_joint 9.333333e-03

Joint ci ratio: 1.460546e-01	ci left: 9.441334e-03	ci right 1.094254e-02	k: 712	n:70000
Cons ci ratio: 1.358468e-02	ci left: 5.395725e-01	ci right 5.469668e-01	k: 38029	n:70000
KS ci ratio: 2.269768e-01	ci left: 3.761374e-03	ci right 4.737567e-03	k: 296	n:70000
RHOT1   70000 perm   16 sec   (4443 perm/sec)   p_kst 4.228571e-03   p_cons 5.432714e-01   p_joint 1.017143e-02

Joint ci ratio: 1.091643e-01	ci left: 1.499588e-02	ci right 1.673949e-02	k: 1268	n:80000
Cons ci ratio: 1.272326e-02	ci left: 5.391901e-01	ci right 5.461068e-01	k: 43412	n:80000
KS ci ratio: 2.090727e-01	ci left: 3.917612e-03	ci right 4.843897e-03	k: 349	n:80000
RHOT1   80000 perm   18 sec   (4354 perm/sec)   p_kst 4.362500e-03   p_cons 5.426500e-01   p_joint 1.585000e-02

Joint ci ratio: 1.001967e-01	ci left: 1.588369e-02	ci right 1.756989e-02	k: 1504	n:90000
Cons ci ratio: 1.200328e-02	ci left: 5.390716e-01	ci right 5.455924e-01	k: 48810	n:90000
KS ci ratio: 1.953178e-01	ci left: 4.020347e-03	ci right 4.900951e-03	k: 400	n:90000
RHOT1   90000 perm   21 sec   (4273 perm/sec)   p_kst 4.444444e-03   p_cons 5.423333e-01   p_joint 1.671111e-02

Joint ci ratio: 9.672206e-02	ci left: 1.537779e-02	ci right 1.695045e-02	k: 1615	n:100000
Cons ci ratio: 1.137938e-02	ci left: 5.395861e-01	ci right 5.457714e-01	k: 54268	n:100000
KS ci ratio: 1.852021e-01	ci left: 4.046895e-03	ci right 4.882249e-03	k: 445	n:100000
RHOT1   100000 perm   24 sec   (4193 perm/sec)   p_kst 4.450000e-03   p_cons 5.426800e-01   p_joint 1.615000e-02

Joint ci ratio: 1.015556e-01	ci left: 1.268451e-02	ci right 1.405041e-02	k: 1469	n:110000
Cons ci ratio: 1.060818e-02	ci left: 5.508929e-01	ci right 5.567770e-01	k: 60922	n:110000
KS ci ratio: 1.763308e-01	ci left: 4.078268e-03	ci right 4.875478e-03	k: 491	n:110000
RHOT1   110000 perm   27 sec   (4097 perm/sec)   p_kst 4.463636e-03   p_cons 5.538364e-01   p_joint 1.335455e-02

Joint ci ratio: 1.030782e-01	ci left: 1.129413e-02	ci right 1.252963e-02	k: 1428	n:120000
Cons ci ratio: 1.015749e-02	ci left: 5.509737e-01	ci right 5.566071e-01	k: 66455	n:120000
KS ci ratio: 1.684660e-01	ci left: 4.113192e-03	ci right 4.877725e-03	k: 538	n:120000
RHOT1   120000 perm   30 sec   (4037 perm/sec)   p_kst 4.483333e-03   p_cons 5.537917e-01   p_joint 1.190000e-02

Joint ci ratio: 1.096333e-01	ci left: 9.204268e-03	ci right 1.027931e-02	k: 1265	n:130000
Cons ci ratio: 9.759604e-03	ci left: 5.510543e-01	ci right 5.564664e-01	k: 71989	n:130000
KS ci ratio: 1.619847e-01	ci left: 4.121263e-03	ci right 4.854956e-03	k: 582	n:130000
RHOT1   130000 perm   33 sec   (3981 perm/sec)   p_kst 4.476923e-03   p_cons 5.537615e-01   p_joint 9.730769e-03

Joint ci ratio: 9.898276e-02	ci left: 1.052989e-02	ci right 1.163336e-02	k: 1550	n:140000
Cons ci ratio: 9.414743e-03	ci left: 5.506197e-01	ci right 5.558352e-01	k: 77452	n:140000
KS ci ratio: 1.558242e-01	ci left: 4.149259e-03	ci right 4.857218e-03	k: 629	n:140000
RHOT1   140000 perm   36 sec   (3927 perm/sec)   p_kst 4.492857e-03   p_cons 5.532286e-01   p_joint 1.107143e-02

Joint ci ratio: 9.698663e-02	ci left: 1.025054e-02	ci right 1.130183e-02	k: 1615	n:150000
Cons ci ratio: 9.107819e-03	ci left: 5.500394e-01	ci right 5.550786e-01	k: 82884	n:150000
KS ci ratio: 1.499835e-01	ci left: 4.193232e-03	ci right 4.879470e-03	k: 679	n:150000
RHOT1   150000 perm   39 sec   (3874 perm/sec)   p_kst 4.526667e-03   p_cons 5.525600e-01   p_joint 1.076667e-02

Joint ci ratio: 9.559560e-02	ci left: 9.902570e-03	ci right 1.090279e-02	k: 1663	n:160000
Cons ci ratio: 8.813665e-03	ci left: 5.503972e-01	ci right 5.552759e-01	k: 88454	n:160000
KS ci ratio: 1.459640e-01	ci left: 4.159856e-03	ci right 4.820797e-03	k: 717	n:160000
RHOT1   160000 perm   42 sec   (3821 perm/sec)   p_kst 4.481250e-03   p_cons 5.528375e-01   p_joint 1.039375e-02

Joint ci ratio: 9.431732e-02	ci left: 9.584154e-03	ci right 1.053855e-02	k: 1709	n:170000
Cons ci ratio: 8.544349e-03	ci left: 5.508270e-01	ci right 5.555595e-01	k: 94043	n:170000
KS ci ratio: 1.412229e-01	ci left: 4.193045e-03	ci right 4.835797e-03	k: 766	n:170000
RHOT1   170000 perm   45 sec   (3764 perm/sec)   p_kst 4.505882e-03   p_cons 5.531941e-01   p_joint 1.005294e-02

Joint ci ratio: 9.253090e-02	ci left: 9.415188e-03	ci right 1.033403e-02	k: 1776	n:180000
Cons ci ratio: 8.299974e-03	ci left: 5.511109e-01	ci right 5.557096e-01	k: 99614	n:180000
KS ci ratio: 1.369157e-01	ci left: 4.222854e-03	ci right 4.848823e-03	k: 815	n:180000
RHOT1   180000 perm   49 sec   (3708 perm/sec)   p_kst 4.527778e-03   p_cons 5.534111e-01   p_joint 9.866667e-03

Joint ci ratio: 9.177635e-02	ci left: 9.073833e-03	ci right 9.951756e-03	k: 1806	n:190000
Cons ci ratio: 8.085670e-03	ci left: 5.507399e-01	ci right 5.552163e-01	k: 105066	n:190000
KS ci ratio: 1.289954e-01	ci left: 4.524731e-03	ci right 5.153681e-03	k: 918	n:190000
RHOT1   190000 perm   52 sec   (3655 perm/sec)   p_kst 4.831579e-03   p_cons 5.529789e-01   p_joint 9.505263e-03

Joint ci ratio: 8.969339e-02	ci left: 9.035490e-03	ci right 9.888819e-03	k: 1891	n:200000
Cons ci ratio: 7.882437e-03	ci left: 5.507027e-01	ci right 5.550657e-01	k: 110577	n:200000
KS ci ratio: 1.257533e-01	ci left: 4.530848e-03	ci right 5.143639e-03	k: 966	n:200000
RHOT1   200000 perm   55 sec   (3606 perm/sec)   p_kst 4.830000e-03   p_cons 5.528850e-01   p_joint 9.455000e-03

Joint ci ratio: 9.446431e-02	ci left: 7.748955e-03	ci right 8.521858e-03	k: 1707	n:210000
Cons ci ratio: 7.689943e-03	ci left: 5.509181e-01	ci right 5.551757e-01	k: 116140	n:210000
KS ci ratio: 1.234795e-01	ci left: 4.481171e-03	ci right 5.075483e-03	k: 1002	n:210000
RHOT1   210000 perm   59 sec   (3558 perm/sec)   p_kst 4.771429e-03   p_cons 5.530476e-01   p_joint 8.128571e-03

Joint ci ratio: 9.360223e-02	ci left: 7.538725e-03	ci right 8.283419e-03	k: 1739	n:220000
Cons ci ratio: 7.514141e-03	ci left: 5.509013e-01	ci right 5.550609e-01	k: 121656	n:220000
KS ci ratio: 1.208002e-01	ci left: 4.475776e-03	ci right 5.055572e-03	k: 1047	n:220000
RHOT1   220000 perm   63 sec   (3511 perm/sec)   p_kst 4.759091e-03   p_cons 5.529818e-01   p_joint 7.904545e-03

Joint ci ratio: 7.919872e-02	ci left: 1.012153e-02	ci right 1.096043e-02	k: 2423	n:230000
Cons ci ratio: 7.348384e-03	ci left: 5.509870e-01	ci right 5.550551e-01	k: 127195	n:230000
KS ci ratio: 1.181252e-01	ci left: 4.483638e-03	ci right 5.050693e-03	k: 1095	n:230000
RHOT1   230000 perm   66 sec   (3466 perm/sec)   p_kst 4.760870e-03   p_cons 5.530217e-01   p_joint 1.053478e-02

Joint ci ratio: 7.758378e-02	ci left: 1.011647e-02	ci right 1.093708e-02	k: 2525	n:240000
Cons ci ratio: 7.189314e-03	ci left: 5.513291e-01	ci right 5.553112e-01	k: 132797	n:240000
KS ci ratio: 1.159263e-01	ci left: 4.466695e-03	ci right 5.020370e-03	k: 1137	n:240000
RHOT1   240000 perm   70 sec   (3422 perm/sec)   p_kst 4.737500e-03   p_cons 5.533208e-01   p_joint 1.052083e-02

Joint ci ratio: 7.700202e-02	ci left: 9.864748e-03	ci right 1.065867e-02	k: 2564	n:250000
Cons ci ratio: 7.041566e-03	ci left: 5.515447e-01	ci right 5.554461e-01	k: 138374	n:250000
KS ci ratio: 1.137489e-01	ci left: 4.458970e-03	ci right 5.000610e-03	k: 1181	n:250000
RHOT1   250000 perm   74 sec   (3377 perm/sec)   p_kst 4.724000e-03   p_cons 5.534960e-01   p_joint 1.025600e-02

Joint ci ratio: 7.223435e-02	ci left: 1.079525e-02	ci right 1.160801e-02	k: 2911	n:260000
Cons ci ratio: 6.910843e-03	ci left: 5.511518e-01	ci right 5.549778e-01	k: 143797	n:260000
KS ci ratio: 1.115072e-01	ci left: 4.466887e-03	ci right 4.998092e-03	k: 1229	n:260000
RHOT1   260000 perm   78 sec   (3334 perm/sec)   p_kst 4.726923e-03   p_cons 5.530654e-01   p_joint 1.119615e-02

Joint ci ratio: 7.394973e-02	ci left: 9.918941e-03	ci right 1.068422e-02	k: 2780	n:270000
Cons ci ratio: 6.782555e-03	ci left: 5.511222e-01	ci right 5.548766e-01	k: 149310	n:270000
KS ci ratio: 1.093500e-01	ci left: 4.477917e-03	ci right 4.999468e-03	k: 1278	n:270000
RHOT1   270000 perm   82 sec   (3293 perm/sec)   p_kst 4.733333e-03   p_cons 5.530000e-01   p_joint 1.029630e-02

Joint ci ratio: 6.708809e-02	ci left: 1.164211e-02	ci right 1.245375e-02	k: 3372	n:280000
Cons ci ratio: 6.659568e-03	ci left: 5.512133e-01	ci right 5.548999e-01	k: 154856	n:280000
KS ci ratio: 1.071110e-01	ci left: 4.505631e-03	ci right 5.018988e-03	k: 1332	n:280000
RHOT1   280000 perm   86 sec   (3253 perm/sec)   p_kst 4.757143e-03   p_cons 5.530571e-01   p_joint 1.204286e-02

Joint ci ratio: 6.450143e-02	ci left: 1.217005e-02	ci right 1.298456e-02	k: 3646	n:290000
Cons ci ratio: 6.548196e-03	ci left: 5.509088e-01	ci right 5.545315e-01	k: 160289	n:290000
KS ci ratio: 1.051565e-01	ci left: 4.518103e-03	ci right 5.022906e-03	k: 1382	n:290000
RHOT1   290000 perm   90 sec   (3214 perm/sec)   p_kst 4.765517e-03   p_cons 5.527207e-01   p_joint 1.257241e-02

Joint ci ratio: 6.415988e-02	ci left: 1.189551e-02	ci right 1.268728e-02	k: 3686	n:300000
Cons ci ratio: 6.436626e-03	ci left: 5.510553e-01	ci right 5.546170e-01	k: 165851	n:300000
KS ci ratio: 1.028734e-01	ci left: 4.568796e-03	ci right 5.067510e-03	k: 1444	n:300000
RHOT1   300000 perm   94 sec   (3176 perm/sec)   p_kst 4.813333e-03   p_cons 5.528367e-01   p_joint 1.228667e-02

Joint ci ratio: 6.430527e-02	ci left: 1.146410e-02	ci right 1.222894e-02	k: 3671	n:310000
Cons ci ratio: 6.333875e-03	ci left: 5.509347e-01	ci right 5.544385e-01	k: 171333	n:310000
KS ci ratio: 1.012403e-01	ci left: 4.569159e-03	ci right 5.059524e-03	k: 1491	n:310000
RHOT1   310000 perm   99 sec   (3138 perm/sec)   p_kst 4.809677e-03   p_cons 5.526871e-01   p_joint 1.184194e-02

Joint ci ratio: 6.477389e-02	ci left: 1.094895e-02	ci right 1.168494e-02	k: 3620	n:320000
Cons ci ratio: 6.239005e-03	ci left: 5.505751e-01	ci right 5.540240e-01	k: 176736	n:320000
KS ci ratio: 9.991114e-02	ci left: 4.548226e-03	ci right 5.029560e-03	k: 1531	n:320000
RHOT1   320000 perm   103 sec   (3101 perm/sec)   p_kst 4.784375e-03   p_cons 5.523000e-01   p_joint 1.131250e-02

Outputting figure to mutsig2_images.part000000000147/RHOT1.4_2160_320000_0.0047844_0.5523_0.011312.png
                gene_name: RHOT1
               theta_stop: 0.100 
                    nperm: 320000 
                     p_ks: 0.0048 
        ci_ks_bounds_left: 0.0045 
       ci_ks_bounds_right: 0.0050 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 33 percent done.
RILP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.292744e-01	ci left: 7.873206e-02	ci right 8.971158e-02	k: 841	n:10000
Cons ci ratio: 3.391837e-02	ci left: 5.620320e-01	ci right 5.815262e-01	k: 5718	n:10000
KS ci ratio: 1.900600e-01	ci left: 3.691153e-02	ci right 4.475883e-02	k: 407	n:10000
RILP   10000 perm   2 sec   (5799 perm/sec)   p_kst 4.070000e-02   p_cons 5.718000e-01   p_joint 8.410000e-02

Joint ci ratio: 9.692394e-02	ci left: 7.192427e-02	ci right 7.929968e-02	k: 1511	n:20000
Cons ci ratio: 2.477590e-02	ci left: 5.489311e-01	ci right 5.627526e-01	k: 11117	n:20000
KS ci ratio: 1.314830e-01	ci left: 3.974595e-02	ci right 4.538802e-02	k: 850	n:20000
RILP   20000 perm   4 sec   (5015 perm/sec)   p_kst 4.250000e-02   p_cons 5.558500e-01   p_joint 7.555000e-02

Joint ci ratio: 6.449605e-02	ci left: 1.060863e-01	ci right 1.131895e-01	k: 3288	n:30000
Cons ci ratio: 2.009027e-02	ci left: 5.536264e-01	ci right 5.648954e-01	k: 16778	n:30000
KS ci ratio: 1.079538e-01	ci left: 3.982288e-02	ci right 4.439966e-02	k: 1262	n:30000
RILP   30000 perm   6 sec   (4783 perm/sec)   p_kst 4.206667e-02   p_cons 5.592667e-01   p_joint 1.096000e-01

Joint ci ratio: 4.916635e-02	ci left: 1.337433e-01	ci right 1.405095e-01	k: 5484	n:40000
Cons ci ratio: 1.738446e-02	ci left: 5.547934e-01	ci right 5.645479e-01	k: 22387	n:40000
KS ci ratio: 9.458102e-02	ci left: 3.922427e-02	ci right 4.314270e-02	k: 1646	n:40000
RILP   40000 perm   9 sec   (4561 perm/sec)   p_kst 4.115000e-02   p_cons 5.596750e-01   p_joint 1.371000e-01

Outputting figure to mutsig2_images.part000000000147/RILP.4_1238_40000_0.04115_0.55968_0.1371.png
                gene_name: RILP
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 35 percent done.
RIMKLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.727471e-02	ci left: 3.097694e-01	ci right 3.281362e-01	k: 3189	n:10000
Cons ci ratio: 5.245524e-03	ci left: 9.797349e-01	ci right 9.849787e-01	k: 9825	n:10000
KS ci ratio: 7.623591e-02	ci left: 2.010665e-01	ci right 2.171033e-01	k: 2090	n:10000
RIMKLB   10000 perm   2 sec   (6186 perm/sec)   p_kst 2.090000e-01   p_cons 9.825000e-01   p_joint 3.189000e-01

Outputting figure to mutsig2_images.part000000000147/RIMKLB.4_1181_10000_0.209_0.9825_0.3189.png
                gene_name: RIMKLB
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 37 percent done.
RIMS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.190577e-02	ci left: 2.207943e-01	ci right 2.373638e-01	k: 2290	n:10000
Cons ci ratio: 2.144844e-02	ci left: 7.612190e-01	ci right 7.778238e-01	k: 7696	n:10000
KS ci ratio: 1.164346e-01	ci left: 9.584256e-02	ci right 1.077905e-01	k: 1017	n:10000
RIMS3   10000 perm   2 sec   (6265 perm/sec)   p_kst 1.017000e-01   p_cons 7.696000e-01   p_joint 2.290000e-01

Joint ci ratio: 5.389127e-02	ci left: 2.035311e-01	ci right 2.148536e-01	k: 4183	n:20000
Cons ci ratio: 1.515777e-02	ci left: 7.639019e-01	ci right 7.756196e-01	k: 15396	n:20000
KS ci ratio: 8.359604e-02	ci left: 9.489433e-02	ci right 1.032226e-01	k: 1980	n:20000
RIMS3   20000 perm   4 sec   (5581 perm/sec)   p_kst 9.900000e-02   p_cons 7.698000e-01   p_joint 2.091500e-01

Outputting figure to mutsig2_images.part000000000147/RIMS3.4_951_20000_0.099_0.7698_0.20915.png
                gene_name: RIMS3
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 38 percent done.
RIMS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.979647e-02	ci left: 7.887776e-01	ci right 8.046492e-01	k: 7968	n:10000
Cons ci ratio: 3.602251e-02	ci left: 5.322739e-01	ci right 5.519016e-01	k: 5421	n:10000
KS ci ratio: 2.708085e-02	ci left: 6.676335e-01	ci right 6.860634e-01	k: 6769	n:10000
RIMS4   10000 perm   2 sec   (6115 perm/sec)   p_kst 6.769000e-01   p_cons 5.421000e-01   p_joint 7.968000e-01

Outputting figure to mutsig2_images.part000000000147/RIMS4.4_834_10000_0.6769_0.5421_0.7968.png
                gene_name: RIMS4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 40 percent done.
RINT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.748370e-02	ci left: 5.124546e-01	ci right 5.321324e-01	k: 5223	n:10000
Cons ci ratio: 3.204988e-02	ci left: 5.896176e-01	ci right 6.089245e-01	k: 5993	n:10000
KS ci ratio: 5.958053e-02	ci left: 2.930100e-01	ci right 3.111054e-01	k: 3020	n:10000
RINT1   10000 perm   2 sec   (5270 perm/sec)   p_kst 3.020000e-01   p_cons 5.993000e-01   p_joint 5.223000e-01

Outputting figure to mutsig2_images.part000000000147/RINT1.4_2439_10000_0.302_0.5993_0.5223.png
                gene_name: RINT1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 42 percent done.
RIOK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.128739e-02	ci left: 9.181162e-01	ci right 9.286356e-01	k: 9235	n:10000
KS ci ratio: 1.998574e-02	ci left: 7.856340e-01	ci right 8.015946e-01	k: 7937	n:10000
RIOK2   10000 perm   2 sec   (5720 perm/sec)   p_kst 7.937000e-01   p_cons 9.235000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RIOK2.4_1727_10000_0.7937_0.9235_1.png
                gene_name: RIOK2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
RIPK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
Cons ci ratio: 2.152427e-01	ci left: 2.863733e-02	ci right 3.563870e-02	k: 320	n:10000
KS ci ratio: 2.022342e-02	ci left: 7.816803e-01	ci right 7.977506e-01	k: 7898	n:10000
RIPK3   10000 perm   2 sec   (5569 perm/sec)   p_kst 7.898000e-01   p_cons 3.200000e-02   p_joint 1.086000e-01

Joint ci ratio: 7.011743e-02	ci left: 1.303908e-01	ci right 1.399155e-01	k: 2702	n:20000
Cons ci ratio: 1.439520e-01	ci left: 3.317126e-02	ci right 3.836483e-02	k: 714	n:20000
KS ci ratio: 1.427195e-02	ci left: 7.847425e-01	ci right 7.960729e-01	k: 15809	n:20000
RIPK3   20000 perm   4 sec   (5008 perm/sec)   p_kst 7.904500e-01   p_cons 3.570000e-02   p_joint 1.351000e-01

Joint ci ratio: 6.651223e-02	ci left: 1.003048e-01	ci right 1.072388e-01	k: 3112	n:30000
Cons ci ratio: 1.155680e-01	ci left: 3.479506e-02	ci right 3.909522e-02	k: 1107	n:30000
KS ci ratio: 1.175546e-02	ci left: 7.828601e-01	ci right 7.921508e-01	k: 23626	n:30000
RIPK3   30000 perm   6 sec   (4796 perm/sec)   p_kst 7.875333e-01   p_cons 3.690000e-02   p_joint 1.037333e-01

Joint ci ratio: 6.461824e-02	ci left: 8.152110e-02	ci right 8.698944e-02	k: 3369	n:40000
Cons ci ratio: 1.129622e-01	ci left: 2.757178e-02	ci right 3.089703e-02	k: 1168	n:40000
KS ci ratio: 1.015414e-02	ci left: 7.843640e-01	ci right 7.923941e-01	k: 31536	n:40000
RIPK3   40000 perm   9 sec   (4657 perm/sec)   p_kst 7.884000e-01   p_cons 2.920000e-02   p_joint 8.422500e-02

Joint ci ratio: 6.381020e-02	ci left: 6.793622e-02	ci right 7.243384e-02	k: 3508	n:50000
Cons ci ratio: 1.004452e-01	ci left: 2.807328e-02	ci right 3.106167e-02	k: 1477	n:50000
KS ci ratio: 9.055447e-03	ci left: 7.857792e-01	ci right 7.929471e-01	k: 39469	n:50000
RIPK3   50000 perm   11 sec   (4550 perm/sec)   p_kst 7.893800e-01   p_cons 2.954000e-02   p_joint 7.016000e-02

Joint ci ratio: 5.693660e-02	ci left: 7.112823e-02	ci right 7.531316e-02	k: 4392	n:60000
Cons ci ratio: 9.131236e-02	ci left: 2.843761e-02	ci right 3.117479e-02	k: 1787	n:60000
KS ci ratio: 8.242330e-03	ci left: 7.870706e-01	ci right 7.936013e-01	k: 47421	n:60000
RIPK3   60000 perm   13 sec   (4445 perm/sec)   p_kst 7.903500e-01   p_cons 2.978333e-02   p_joint 7.320000e-02

Outputting figure to mutsig2_images.part000000000147/RIPK3.4_1597_60000_0.79035_0.029783_0.0732.png
                gene_name: RIPK3
               theta_stop: 0.091 
                    nperm: 60000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.075 

Current progress: 46 percent done.
RIPK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.609721e-02	ci left: 2.515227e-01	ci right 2.688172e-01	k: 2601	n:10000
Cons ci ratio: 1.640474e-02	ci left: 8.438687e-01	ci right 8.579262e-01	k: 8510	n:10000
KS ci ratio: 1.159281e-01	ci left: 9.662172e-02	ci right 1.086109e-01	k: 1025	n:10000
RIPK4   10000 perm   2 sec   (6038 perm/sec)   p_kst 1.025000e-01   p_cons 8.510000e-01   p_joint 2.601000e-01

Joint ci ratio: 6.201693e-02	ci left: 1.613115e-01	ci right 1.716857e-01	k: 3329	n:20000
Cons ci ratio: 1.151445e-02	ci left: 8.478641e-01	ci right 8.577331e-01	k: 17057	n:20000
KS ci ratio: 8.392559e-02	ci left: 9.420749e-02	ci right 1.025097e-01	k: 1966	n:20000
RIPK4   20000 perm   4 sec   (5396 perm/sec)   p_kst 9.830000e-02   p_cons 8.528500e-01   p_joint 1.664500e-01

Outputting figure to mutsig2_images.part000000000147/RIPK4.4_2387_20000_0.0983_0.85285_0.16645.png
                gene_name: RIPK4
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 48 percent done.
RNASET2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.192588e-01	ci left: 9.165653e-02	ci right 1.033791e-01	k: 974	n:10000
Cons ci ratio: 4.267076e-02	ci left: 4.477990e-01	ci right 4.674257e-01	k: 4576	n:10000
KS ci ratio: 2.589536e-01	ci left: 1.949575e-02	ci right 2.538701e-02	k: 223	n:10000
RNASET2   10000 perm   2 sec   (6310 perm/sec)   p_kst 2.230000e-02   p_cons 4.576000e-01   p_joint 9.740000e-02

Joint ci ratio: 1.293542e-01	ci left: 4.105370e-02	ci right 4.677985e-02	k: 877	n:20000
Cons ci ratio: 3.115412e-02	ci left: 4.349015e-01	ci right 4.487155e-01	k: 8836	n:20000
KS ci ratio: 1.816657e-01	ci left: 2.068037e-02	ci right 2.485997e-02	k: 454	n:20000
RNASET2   20000 perm   4 sec   (5639 perm/sec)   p_kst 2.270000e-02   p_cons 4.418000e-01   p_joint 4.385000e-02

Joint ci ratio: 9.840823e-02	ci left: 4.775609e-02	ci right 5.273147e-02	k: 1506	n:30000
Cons ci ratio: 2.545172e-02	ci left: 4.359034e-01	ci right 4.471745e-01	k: 13246	n:30000
KS ci ratio: 1.495117e-01	ci left: 2.072307e-02	ci right 2.410363e-02	k: 671	n:30000
RNASET2   30000 perm   6 sec   (5370 perm/sec)   p_kst 2.236667e-02   p_cons 4.415333e-01   p_joint 5.020000e-02

Joint ci ratio: 8.860363e-02	ci left: 4.457934e-02	ci right 4.873680e-02	k: 1865	n:40000
Cons ci ratio: 2.195892e-02	ci left: 4.385233e-01	ci right 4.482849e-01	k: 17736	n:40000
KS ci ratio: 1.327778e-01	ci left: 1.990741e-02	ci right 2.276267e-02	k: 852	n:40000
RNASET2   40000 perm   8 sec   (5188 perm/sec)   p_kst 2.130000e-02   p_cons 4.434000e-01   p_joint 4.662500e-02

Joint ci ratio: 9.378606e-02	ci left: 3.217447e-02	ci right 3.535995e-02	k: 1687	n:50000
Cons ci ratio: 1.968945e-02	ci left: 4.378203e-01	ci right 4.465465e-01	k: 22109	n:50000
KS ci ratio: 1.178183e-01	ci left: 2.038244e-02	ci right 2.295351e-02	k: 1082	n:50000
RNASET2   50000 perm   10 sec   (5037 perm/sec)   p_kst 2.164000e-02   p_cons 4.421800e-01   p_joint 3.374000e-02

Joint ci ratio: 9.112866e-02	ci left: 2.855169e-02	ci right 3.129403e-02	k: 1794	n:60000
Cons ci ratio: 1.798970e-02	ci left: 4.377710e-01	ci right 4.457346e-01	k: 26505	n:60000
KS ci ratio: 1.080469e-01	ci left: 2.030561e-02	ci right 2.264100e-02	k: 1287	n:60000
RNASET2   60000 perm   12 sec   (4923 perm/sec)   p_kst 2.145000e-02   p_cons 4.417500e-01   p_joint 2.990000e-02

Joint ci ratio: 8.500203e-02	ci left: 2.823096e-02	ci right 3.075110e-02	k: 2063	n:70000
Cons ci ratio: 1.663048e-02	ci left: 4.388016e-01	ci right 4.461746e-01	k: 30974	n:70000
KS ci ratio: 1.010563e-01	ci left: 1.997843e-02	ci right 2.211868e-02	k: 1472	n:70000
RNASET2   70000 perm   15 sec   (4815 perm/sec)   p_kst 2.102857e-02   p_cons 4.424857e-01   p_joint 2.947143e-02

Joint ci ratio: 6.746887e-02	ci left: 3.911983e-02	ci right 4.186362e-02	k: 3238	n:80000
Cons ci ratio: 1.553865e-02	ci left: 4.396037e-01	ci right 4.465005e-01	k: 35444	n:80000
KS ci ratio: 9.419945e-02	ci left: 2.018852e-02	ci right 2.219642e-02	k: 1694	n:80000
RNASET2   80000 perm   17 sec   (4717 perm/sec)   p_kst 2.117500e-02   p_cons 4.430500e-01   p_joint 4.047500e-02

Outputting figure to mutsig2_images.part000000000147/RNASET2.4_807_80000_0.021175_0.44305_0.040475.png
                gene_name: RNASET2
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 50 percent done.
RNF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.844707e-02	ci left: 1.919029e-01	ci right 2.076724e-01	k: 1997	n:10000
Cons ci ratio: 3.904550e-02	ci left: 4.920509e-01	ci right 5.117480e-01	k: 5019	n:10000
KS ci ratio: 1.121871e-01	ci left: 1.026640e-01	ci right 1.149650e-01	k: 1087	n:10000
RNF10   10000 perm   2 sec   (5337 perm/sec)   p_kst 1.087000e-01   p_cons 5.019000e-01   p_joint 1.997000e-01

Joint ci ratio: 5.481199e-02	ci left: 1.980377e-01	ci right 2.092486e-01	k: 4072	n:20000
Cons ci ratio: 2.780533e-02	ci left: 4.914462e-01	ci right 5.053543e-01	k: 9968	n:20000
KS ci ratio: 8.103225e-02	ci left: 1.004895e-01	ci right 1.090258e-01	k: 2094	n:20000
RNF10   20000 perm   4 sec   (4825 perm/sec)   p_kst 1.047000e-01   p_cons 4.984000e-01   p_joint 2.036000e-01

Outputting figure to mutsig2_images.part000000000147/RNF10.4_2504_20000_0.1047_0.4984_0.2036.png
                gene_name: RNF10
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 52 percent done.
RHOJ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.519609e-02	ci left: 5.437922e-01	ci right 5.633765e-01	k: 5536	n:10000
Cons ci ratio: 5.959467e-02	ci left: 2.929109e-01	ci right 3.110046e-01	k: 3019	n:10000
KS ci ratio: 1.914655e-02	ci left: 7.995320e-01	ci right 8.150886e-01	k: 8074	n:10000
RHOJ   10000 perm   2 sec   (6648 perm/sec)   p_kst 8.074000e-01   p_cons 3.019000e-01   p_joint 5.536000e-01

Outputting figure to mutsig2_images.part000000000147/RHOJ.3_665_10000_0.8074_0.3019_0.5536.png
                gene_name: RHOJ
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 54 percent done.
RHOXF2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.498665e-02	ci left: 4.217637e-01	ci right 4.412762e-01	k: 4315	n:10000
Cons ci ratio: 7.062704e-02	ci left: 2.271129e-01	ci right 2.438415e-01	k: 2354	n:10000
KS ci ratio: 4.319882e-02	ci left: 4.417117e-01	ci right 4.613165e-01	k: 4515	n:10000
RHOXF2B   10000 perm   2 sec   (6512 perm/sec)   p_kst 4.515000e-01   p_cons 2.354000e-01   p_joint 4.315000e-01

Outputting figure to mutsig2_images.part000000000147/RHOXF2B.3_1766_10000_0.4515_0.2354_0.4315.png
                gene_name: RHOXF2B
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 56 percent done.
RIC8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.559459e-02	ci left: 8.565131e-01	ci right 8.700745e-01	k: 8634	n:10000
KS ci ratio: 5.409992e-03	ci left: 9.785573e-01	ci right 9.839571e-01	k: 9814	n:10000
RIC8A   10000 perm   2 sec   (6018 perm/sec)   p_kst 9.814000e-01   p_cons 8.634000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RIC8A.3_1654_10000_0.9814_0.8634_1.png
                gene_name: RIC8A
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
RIMKLA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.898945e-02	ci left: 1.552204e-01	ci right 1.697768e-01	k: 1624	n:10000
Cons ci ratio: 3.456684e-02	ci left: 5.527100e-01	ci right 5.722536e-01	k: 5625	n:10000
KS ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
RIMKLA   10000 perm   2 sec   (6388 perm/sec)   p_kst 4.270000e-02   p_cons 5.625000e-01   p_joint 1.624000e-01

Joint ci ratio: 7.554461e-02	ci left: 1.141498e-01	ci right 1.231614e-01	k: 2372	n:20000
Cons ci ratio: 2.442411e-02	ci left: 5.559918e-01	ci right 5.697899e-01	k: 11258	n:20000
KS ci ratio: 1.319696e-01	ci left: 3.945544e-02	ci right 4.507862e-02	k: 844	n:20000
RIMKLA   20000 perm   4 sec   (5607 perm/sec)   p_kst 4.220000e-02   p_cons 5.629000e-01   p_joint 1.186000e-01

Joint ci ratio: 6.142315e-02	ci left: 1.158497e-01	ci right 1.232241e-01	k: 3585	n:30000
Cons ci ratio: 2.000483e-02	ci left: 5.557291e-01	ci right 5.669923e-01	k: 16841	n:30000
KS ci ratio: 1.074221e-01	ci left: 4.021255e-02	ci right 4.480992e-02	k: 1274	n:30000
RIMKLA   30000 perm   6 sec   (5323 perm/sec)   p_kst 4.246667e-02   p_cons 5.613667e-01   p_joint 1.195000e-01

Joint ci ratio: 6.521170e-02	ci left: 8.014185e-02	ci right 8.556889e-02	k: 3313	n:40000
Cons ci ratio: 1.722541e-02	ci left: 5.593236e-01	ci right 5.690670e-01	k: 22568	n:40000
KS ci ratio: 9.226802e-02	ci left: 4.117946e-02	ci right 4.518720e-02	k: 1726	n:40000
RIMKLA   40000 perm   8 sec   (5137 perm/sec)   p_kst 4.315000e-02   p_cons 5.642000e-01   p_joint 8.282500e-02

Outputting figure to mutsig2_images.part000000000147/RIMKLA.3_1196_40000_0.04315_0.5642_0.082825.png
                gene_name: RIMKLA
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.086 

Current progress: 60 percent done.
RIPK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.078946e-01	ci left: 1.102743e-01	ci right 1.229500e-01	k: 1165	n:10000
Cons ci ratio: 1.081046e-01	ci left: 1.098838e-01	ci right 1.225407e-01	k: 1161	n:10000
KS ci ratio: 1.360970e-01	ci left: 7.136438e-02	ci right 8.188384e-02	k: 765	n:10000
RIPK2   10000 perm   2 sec   (5866 perm/sec)   p_kst 7.650000e-02   p_cons 1.161000e-01   p_joint 1.165000e-01

Joint ci ratio: 8.003307e-02	ci left: 1.027974e-01	ci right 1.114172e-01	k: 2141	n:20000
Cons ci ratio: 7.522128e-02	ci left: 1.150350e-01	ci right 1.240759e-01	k: 2390	n:20000
KS ci ratio: 9.709772e-02	ci left: 7.167988e-02	ci right 7.904415e-02	k: 1506	n:20000
RIPK2   20000 perm   4 sec   (5210 perm/sec)   p_kst 7.530000e-02   p_cons 1.195000e-01   p_joint 1.070500e-01

Outputting figure to mutsig2_images.part000000000147/RIPK2.3_1667_20000_0.0753_0.1195_0.10705.png
                gene_name: RIPK2
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 62 percent done.
RNASEL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.322591e-03	ci left: 9.952521e-01	ci right 9.976443e-01	k: 9966	n:10000
KS ci ratio: 1.864654e-02	ci left: 8.077560e-01	ci right 8.230598e-01	k: 8155	n:10000
RNASEL   10000 perm   2 sec   (5832 perm/sec)   p_kst 8.155000e-01   p_cons 9.966000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RNASEL.3_2250_10000_0.8155_0.9966_1.png
                gene_name: RNASEL
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
RHOH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.774561e-02	ci left: 6.568600e-01	ci right 6.754431e-01	k: 6662	n:10000
KS ci ratio: 2.230595e-02	ci left: 7.468514e-01	ci right 7.637996e-01	k: 7554	n:10000
RHOH   10000 perm   2 sec   (6374 perm/sec)   p_kst 7.554000e-01   p_cons 6.662000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RHOH.2_580_10000_0.7554_0.6662_1.png
                gene_name: RHOH
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
RIBC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.461446e-02	ci left: 2.081653e-01	ci right 2.244003e-01	k: 2162	n:10000
Cons ci ratio: 5.424083e-02	ci left: 3.336927e-01	ci right 3.523989e-01	k: 3430	n:10000
KS ci ratio: 1.069622e-01	ci left: 1.120319e-01	ci right 1.247914e-01	k: 1183	n:10000
RIBC1   10000 perm   1 sec   (6704 perm/sec)   p_kst 1.183000e-01   p_cons 3.430000e-01   p_joint 2.162000e-01

Joint ci ratio: 7.137438e-02	ci left: 1.263528e-01	ci right 1.357547e-01	k: 2620	n:20000
Cons ci ratio: 3.836678e-02	ci left: 3.363196e-01	ci right 3.495261e-01	k: 6858	n:20000
KS ci ratio: 7.638710e-02	ci left: 1.118880e-01	ci right 1.208239e-01	k: 2326	n:20000
RIBC1   20000 perm   3 sec   (5908 perm/sec)   p_kst 1.163000e-01   p_cons 3.429000e-01   p_joint 1.310000e-01

Outputting figure to mutsig2_images.part000000000147/RIBC1.2_1199_20000_0.1163_0.3429_0.131.png
                gene_name: RIBC1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 67 percent done.
RIBC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.056434e-02	ci left: 3.657973e-01	ci right 3.848754e-01	k: 3753	n:10000
Cons ci ratio: 4.004989e-02	ci left: 4.793568e-01	ci right 4.990495e-01	k: 4892	n:10000
KS ci ratio: 8.224759e-02	ci left: 1.774321e-01	ci right 1.927518e-01	k: 1850	n:10000
RIBC2   10000 perm   2 sec   (6537 perm/sec)   p_kst 1.850000e-01   p_cons 4.892000e-01   p_joint 3.753000e-01

Outputting figure to mutsig2_images.part000000000147/RIBC2.2_1161_10000_0.185_0.4892_0.3753.png
                gene_name: RIBC2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 69 percent done.
RILPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.502147e-02	ci left: 8.652935e-01	ci right 8.784890e-01	k: 8720	n:10000
KS ci ratio: 1.197531e-02	ci left: 9.090537e-01	ci right 9.201034e-01	k: 9147	n:10000
RILPL2   10000 perm   2 sec   (6331 perm/sec)   p_kst 9.147000e-01   p_cons 8.720000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RILPL2.2_652_10000_0.9147_0.872_1.png
                gene_name: RILPL2
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
RIMBP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.798077e-02	ci left: 3.045120e-01	ci right 3.227967e-01	k: 3136	n:10000
Cons ci ratio: 5.311696e-02	ci left: 3.431304e-01	ci right 3.619556e-01	k: 3525	n:10000
KS ci ratio: 8.961576e-02	ci left: 1.533552e-01	ci right 1.678431e-01	k: 1605	n:10000
RIMBP3   10000 perm   2 sec   (5096 perm/sec)   p_kst 1.605000e-01   p_cons 3.525000e-01   p_joint 3.136000e-01

Outputting figure to mutsig2_images.part000000000147/RIMBP3.2_4924_10000_0.1605_0.3525_0.3136.png
                gene_name: RIMBP3
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 73 percent done.
RING1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.476387e-02	ci left: 5.499041e-01	ci right 5.694611e-01	k: 5597	n:10000
Cons ci ratio: 5.045670e-02	ci left: 3.667920e-01	ci right 3.858801e-01	k: 3763	n:10000
KS ci ratio: 1.391793e-02	ci left: 8.817580e-01	ci right 8.942150e-01	k: 8881	n:10000
RING1   10000 perm   2 sec   (6467 perm/sec)   p_kst 8.881000e-01   p_cons 3.763000e-01   p_joint 5.597000e-01

Outputting figure to mutsig2_images.part000000000147/RING1.2_1245_10000_0.8881_0.3763_0.5597.png
                gene_name: RING1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 75 percent done.
RINL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
Cons ci ratio: 2.328950e-02	ci left: 7.303745e-01	ci right 7.476861e-01	k: 7391	n:10000
KS ci ratio: 2.262761e+00	ci left: 2.422185e-05	ci right 7.222801e-04	k: 2	n:10000
RINL   10000 perm   2 sec   (6321 perm/sec)   p_kst 2.000000e-04   p_cons 7.391000e-01   p_joint 4.000000e-04

Joint ci ratio: 1.047271e+00	ci left: 3.461416e-04	ci right 1.111263e-03	k: 13	n:20000
Cons ci ratio: 1.632538e-02	ci left: 7.363297e-01	ci right 7.484998e-01	k: 14849	n:20000
KS ci ratio: 1.239272e+00	ci left: 2.057886e-04	ci right 8.540675e-04	k: 9	n:20000
RINL   20000 perm   4 sec   (5695 perm/sec)   p_kst 4.500000e-04   p_cons 7.424500e-01   p_joint 6.500000e-04

Joint ci ratio: 3.953260e-01	ci left: 2.622774e-03	ci right 3.942989e-03	k: 97	n:30000
Cons ci ratio: 1.321409e-02	ci left: 7.407991e-01	ci right 7.506866e-01	k: 22373	n:30000
KS ci ratio: 1.047402e+00	ci left: 2.307513e-04	ci right 7.408992e-04	k: 13	n:30000
RINL   30000 perm   6 sec   (5440 perm/sec)   p_kst 4.333333e-04   p_cons 7.457667e-01   p_joint 3.233333e-03

Joint ci ratio: 4.583767e-01	ci left: 1.408647e-03	ci right 2.266273e-03	k: 72	n:40000
Cons ci ratio: 1.148651e-02	ci left: 7.400449e-01	ci right 7.486196e-01	k: 29774	n:40000
KS ci ratio: 9.237334e-01	ci left: 2.475970e-04	ci right 6.803793e-04	k: 17	n:40000
RINL   40000 perm   8 sec   (5272 perm/sec)   p_kst 4.250000e-04   p_cons 7.443500e-01   p_joint 1.800000e-03

Joint ci ratio: 7.277073e-01	ci left: 3.721472e-04	ci right 8.092550e-04	k: 28	n:50000
Cons ci ratio: 1.063230e-02	ci left: 7.271702e-01	ci right 7.349630e-01	k: 36554	n:50000
KS ci ratio: 8.763546e-01	ci left: 2.287998e-04	ci right 5.933537e-04	k: 19	n:50000
RINL   50000 perm   10 sec   (5126 perm/sec)   p_kst 3.800000e-04   p_cons 7.310800e-01   p_joint 5.600000e-04

Joint ci ratio: 7.038650e-01	ci left: 3.373725e-04	ci right 7.137048e-04	k: 30	n:60000
Cons ci ratio: 9.699678e-03	ci left: 7.277671e-01	ci right 7.348772e-01	k: 43880	n:60000
KS ci ratio: 8.552573e-01	ci left: 2.036202e-04	ci right 5.147596e-04	k: 20	n:60000
RINL   60000 perm   12 sec   (5006 perm/sec)   p_kst 3.333333e-04   p_cons 7.313333e-01   p_joint 5.000000e-04

Joint ci ratio: 6.531607e-01	ci left: 3.482923e-04	ci right 6.953110e-04	k: 35	n:70000
Cons ci ratio: 8.985496e-03	ci left: 7.277987e-01	ci right 7.343821e-01	k: 51177	n:70000
KS ci ratio: 7.686270e-01	ci left: 2.311369e-04	ci right 5.271685e-04	k: 25	n:70000
RINL   70000 perm   14 sec   (4901 perm/sec)   p_kst 3.571429e-04   p_cons 7.311000e-01   p_joint 5.000000e-04

Joint ci ratio: 7.542723e-01	ci left: 2.123114e-04	ci right 4.761643e-04	k: 26	n:80000
Cons ci ratio: 8.417191e-03	ci left: 7.274484e-01	ci right 7.336098e-01	k: 58443	n:80000
KS ci ratio: 7.542723e-01	ci left: 2.123114e-04	ci right 4.761643e-04	k: 26	n:80000
RINL   80000 perm   17 sec   (4791 perm/sec)   p_kst 3.250000e-04   p_cons 7.305375e-01   p_joint 3.250000e-04

Joint ci ratio: 5.101704e-01	ci left: 4.893889e-04	ci right 8.330153e-04	k: 58	n:90000
Cons ci ratio: 7.946418e-03	ci left: 7.270977e-01	ci right 7.329097e-01	k: 65701	n:90000
KS ci ratio: 6.928376e-01	ci left: 2.340449e-04	ci right 4.888761e-04	k: 31	n:90000
RINL   90000 perm   19 sec   (4694 perm/sec)   p_kst 3.444444e-04   p_cons 7.300111e-01   p_joint 6.444444e-04

Joint ci ratio: 3.637499e-01	ci left: 9.495334e-04	ci right 1.380242e-03	k: 115	n:100000
Cons ci ratio: 7.534834e-03	ci left: 7.274474e-01	ci right 7.329593e-01	k: 73021	n:100000
KS ci ratio: 6.532125e-01	ci left: 2.437996e-04	ci right 4.867320e-04	k: 35	n:100000
RINL   100000 perm   22 sec   (4595 perm/sec)   p_kst 3.500000e-04   p_cons 7.302100e-01   p_joint 1.150000e-03

Joint ci ratio: 3.476413e-01	ci left: 9.542812e-04	ci right 1.363661e-03	k: 126	n:110000
Cons ci ratio: 7.192157e-03	ci left: 7.271379e-01	ci right 7.323955e-01	k: 80275	n:110000
KS ci ratio: 6.275882e-01	ci left: 2.444754e-04	ci right 4.741328e-04	k: 38	n:110000
RINL   110000 perm   24 sec   (4510 perm/sec)   p_kst 3.454545e-04   p_cons 7.297727e-01   p_joint 1.145455e-03

Joint ci ratio: 4.823839e-01	ci left: 4.180710e-04	ci right 6.903473e-04	k: 65	n:120000
Cons ci ratio: 6.892621e-03	ci left: 7.268683e-01	ci right 7.319039e-01	k: 87527	n:120000
KS ci ratio: 6.047608e-01	ci left: 2.451967e-04	ci right 4.634812e-04	k: 41	n:120000
RINL   120000 perm   27 sec   (4422 perm/sec)   p_kst 3.416667e-04   p_cons 7.293917e-01   p_joint 5.416667e-04

Joint ci ratio: 4.437177e-01	ci left: 4.674674e-04	ci right 7.402282e-04	k: 77	n:130000
Cons ci ratio: 6.628659e-03	ci left: 7.265826e-01	ci right 7.314225e-01	k: 94771	n:130000
KS ci ratio: 5.383416e-01	ci left: 2.987531e-04	ci right 5.245141e-04	k: 52	n:130000
RINL   130000 perm   30 sec   (4344 perm/sec)   p_kst 4.000000e-04   p_cons 7.290077e-01   p_joint 5.923077e-04

Joint ci ratio: 4.250531e-01	ci left: 4.786108e-04	ci right 7.427878e-04	k: 84	n:140000
Cons ci ratio: 6.378424e-03	ci left: 7.272364e-01	ci right 7.318969e-01	k: 102140	n:140000
KS ci ratio: 5.102312e-01	ci left: 3.145991e-04	ci right 5.355279e-04	k: 58	n:140000
RINL   140000 perm   33 sec   (4271 perm/sec)   p_kst 4.142857e-04   p_cons 7.295714e-01   p_joint 6.000000e-04

Joint ci ratio: 4.130789e-01	ci left: 4.765216e-04	ci right 7.300978e-04	k: 89	n:150000
Cons ci ratio: 6.163988e-03	ci left: 7.271974e-01	ci right 7.317003e-01	k: 109418	n:150000
KS ci ratio: 4.977359e-01	ci left: 3.110816e-04	ci right 5.223501e-04	k: 61	n:150000
RINL   150000 perm   36 sec   (4200 perm/sec)   p_kst 4.066667e-04   p_cons 7.294533e-01   p_joint 5.933333e-04

Joint ci ratio: 4.020628e-01	ci left: 4.747851e-04	ci right 7.189040e-04	k: 94	n:160000
Cons ci ratio: 5.971615e-03	ci left: 7.270467e-01	ci right 7.314075e-01	k: 116677	n:160000
KS ci ratio: 4.861159e-01	ci left: 3.080619e-04	ci right 5.107628e-04	k: 64	n:160000
RINL   160000 perm   39 sec   (4133 perm/sec)   p_kst 4.000000e-04   p_cons 7.292312e-01   p_joint 5.875000e-04

Joint ci ratio: 3.918835e-01	ci left: 4.733322e-04	ci right 7.089489e-04	k: 99	n:170000
Cons ci ratio: 5.788685e-03	ci left: 7.274287e-01	ci right 7.316576e-01	k: 124023	n:170000
KS ci ratio: 4.718154e-01	ci left: 3.106286e-04	ci right 5.070682e-04	k: 68	n:170000
RINL   170000 perm   42 sec   (4068 perm/sec)   p_kst 4.000000e-04   p_cons 7.295471e-01   p_joint 5.823529e-04

Joint ci ratio: 2.600147e-01	ci left: 1.097270e-03	ci right 1.430238e-03	k: 226	n:180000
Cons ci ratio: 5.627530e-03	ci left: 7.273523e-01	ci right 7.314625e-01	k: 131294	n:180000
KS ci ratio: 4.555958e-01	ci left: 3.179039e-04	ci right 5.098986e-04	k: 73	n:180000
RINL   180000 perm   45 sec   (4005 perm/sec)   p_kst 4.055556e-04   p_cons 7.294111e-01   p_joint 1.255556e-03

Joint ci ratio: 3.702950e-01	ci left: 4.806201e-04	ci right 7.034982e-04	k: 111	n:190000
Cons ci ratio: 5.474158e-03	ci left: 7.276442e-01	ci right 7.316436e-01	k: 138633	n:190000
KS ci ratio: 4.466338e-01	ci left: 3.151670e-04	ci right 5.006344e-04	k: 76	n:190000
RINL   190000 perm   48 sec   (3944 perm/sec)   p_kst 4.000000e-04   p_cons 7.296474e-01   p_joint 5.842105e-04

Joint ci ratio: 3.592380e-01	ci left: 4.883822e-04	ci right 7.065164e-04	k: 118	n:200000
Cons ci ratio: 5.339165e-03	ci left: 7.274271e-01	ci right 7.313263e-01	k: 145876	n:200000
KS ci ratio: 4.328017e-01	ci left: 3.216411e-04	ci right 5.033533e-04	k: 81	n:200000
RINL   200000 perm   51 sec   (3885 perm/sec)   p_kst 4.050000e-04   p_cons 7.293800e-01   p_joint 5.900000e-04

Joint ci ratio: 3.505103e-01	ci left: 4.911508e-04	ci right 7.039806e-04	k: 124	n:210000
Cons ci ratio: 5.209223e-03	ci left: 7.275707e-01	ci right 7.313754e-01	k: 153190	n:210000
KS ci ratio: 4.226169e-01	ci left: 3.233218e-04	ci right 5.004704e-04	k: 85	n:210000
RINL   210000 perm   55 sec   (3828 perm/sec)   p_kst 4.047619e-04   p_cons 7.294762e-01   p_joint 5.904762e-04

Joint ci ratio: 3.398036e-01	ci left: 5.020385e-04	ci right 7.114838e-04	k: 132	n:220000
Cons ci ratio: 5.087213e-03	ci left: 7.277888e-01	ci right 7.315051e-01	k: 160523	n:220000
KS ci ratio: 4.086019e-01	ci left: 3.330469e-04	ci right 5.078299e-04	k: 91	n:220000
RINL   220000 perm   58 sec   (3772 perm/sec)   p_kst 4.136364e-04   p_cons 7.296500e-01   p_joint 6.000000e-04

Joint ci ratio: 3.243178e-01	ci left: 5.320244e-04	ci right 7.417622e-04	k: 145	n:230000
Cons ci ratio: 4.975695e-03	ci left: 7.278059e-01	ci right 7.314405e-01	k: 167814	n:230000
KS ci ratio: 3.899681e-01	ci left: 3.537700e-04	ci right 5.287873e-04	k: 100	n:230000
RINL   230000 perm   62 sec   (3718 perm/sec)   p_kst 4.347826e-04   p_cons 7.296261e-01   p_joint 6.304348e-04

Joint ci ratio: 3.147596e-01	ci left: 5.443505e-04	ci right 7.513516e-04	k: 154	n:240000
Cons ci ratio: 4.869351e-03	ci left: 7.279726e-01	ci right 7.315302e-01	k: 175141	n:240000
KS ci ratio: 3.788754e-01	ci left: 3.616142e-04	ci right 5.341584e-04	k: 106	n:240000
RINL   240000 perm   65 sec   (3666 perm/sec)   p_kst 4.416667e-04   p_cons 7.297542e-01   p_joint 6.416667e-04

Joint ci ratio: 3.005474e-01	ci left: 5.779489e-04	ci right 7.859103e-04	k: 169	n:250000
Cons ci ratio: 4.774141e-03	ci left: 7.277460e-01	ci right 7.312327e-01	k: 182373	n:250000
KS ci ratio: 3.638777e-01	ci left: 3.797917e-04	ci right 5.521349e-04	k: 115	n:250000
RINL   250000 perm   69 sec   (3614 perm/sec)   p_kst 4.600000e-04   p_cons 7.294920e-01   p_joint 6.760000e-04

Joint ci ratio: 2.912693e-01	ci left: 5.948890e-04	ci right 8.011203e-04	k: 180	n:260000
Cons ci ratio: 4.681427e-03	ci left: 7.277803e-01	ci right 7.311992e-01	k: 189668	n:260000
KS ci ratio: 3.562800e-01	ci left: 3.826756e-04	ci right 5.518619e-04	k: 120	n:260000
RINL   260000 perm   73 sec   (3563 perm/sec)   p_kst 4.615385e-04   p_cons 7.294923e-01   p_joint 6.923077e-04

Joint ci ratio: 2.850377e-01	ci left: 6.003449e-04	ci right 8.032139e-04	k: 188	n:270000
Cons ci ratio: 4.594258e-03	ci left: 7.277830e-01	ci right 7.311380e-01	k: 196955	n:270000
KS ci ratio: 3.463995e-01	ci left: 3.921412e-04	ci right 5.596265e-04	k: 127	n:270000
RINL   270000 perm   77 sec   (3513 perm/sec)   p_kst 4.703704e-04   p_cons 7.294630e-01   p_joint 6.962963e-04

Joint ci ratio: 2.770864e-01	ci left: 6.154221e-04	ci right 8.165737e-04	k: 199	n:280000
Cons ci ratio: 4.511620e-03	ci left: 7.278004e-01	ci right 7.310949e-01	k: 204246	n:280000
KS ci ratio: 3.360550e-01	ci left: 4.042604e-04	ci right 5.706492e-04	k: 135	n:280000
RINL   280000 perm   81 sec   (3463 perm/sec)   p_kst 4.821429e-04   p_cons 7.294500e-01   p_joint 7.107143e-04

Joint ci ratio: 2.723611e-01	ci left: 6.166762e-04	ci right 8.142124e-04	k: 206	n:290000
Cons ci ratio: 4.432629e-03	ci left: 7.278758e-01	ci right 7.311127e-01	k: 211554	n:290000
KS ci ratio: 3.300427e-01	ci left: 4.061203e-04	ci right 5.696493e-04	k: 140	n:290000
RINL   290000 perm   85 sec   (3414 perm/sec)   p_kst 4.827586e-04   p_cons 7.294966e-01   p_joint 7.103448e-04

Joint ci ratio: 2.704106e-01	ci left: 6.054394e-04	ci right 7.977515e-04	k: 209	n:300000
Cons ci ratio: 4.360370e-03	ci left: 7.276995e-01	ci right 7.308827e-01	k: 218788	n:300000
KS ci ratio: 3.288807e-01	ci left: 3.956402e-04	ci right 5.542697e-04	k: 141	n:300000
RINL   300000 perm   89 sec   (3365 perm/sec)   p_kst 4.700000e-04   p_cons 7.292933e-01   p_joint 6.966667e-04

Joint ci ratio: 1.871722e-01	ci left: 1.280671e-03	ci right 1.548144e-03	k: 437	n:310000
Cons ci ratio: 4.289638e-03	ci left: 7.277095e-01	ci right 7.308410e-01	k: 226076	n:310000
KS ci ratio: 3.254616e-01	ci left: 3.917601e-04	ci right 5.468598e-04	k: 144	n:310000
RINL   310000 perm   94 sec   (3315 perm/sec)   p_kst 4.645161e-04   p_cons 7.292774e-01   p_joint 1.409677e-03

Joint ci ratio: 1.838439e-01	ci left: 1.288329e-03	ci right 1.552083e-03	k: 453	n:320000
Cons ci ratio: 4.221605e-03	ci left: 7.277788e-01	ci right 7.308608e-01	k: 233383	n:320000
KS ci ratio: 3.199911e-01	ci left: 3.938771e-04	ci right 5.466567e-04	k: 149	n:320000
RINL   320000 perm   98 sec   (3275 perm/sec)   p_kst 4.656250e-04   p_cons 7.293219e-01   p_joint 1.415625e-03

Joint ci ratio: 2.540038e-01	ci left: 6.296777e-04	ci right 8.156347e-04	k: 237	n:330000
Cons ci ratio: 4.157699e-03	ci left: 7.277502e-01	ci right 7.307852e-01	k: 240659	n:330000
KS ci ratio: 3.147875e-01	ci left: 3.958862e-04	ci right 5.464457e-04	k: 154	n:330000
RINL   330000 perm   102 sec   (3236 perm/sec)   p_kst 4.666667e-04   p_cons 7.292697e-01   p_joint 7.181818e-04

Joint ci ratio: 2.498393e-01	ci left: 6.332019e-04	ci right 8.166571e-04	k: 245	n:340000
Cons ci ratio: 4.096121e-03	ci left: 7.277707e-01	ci right 7.307607e-01	k: 247951	n:340000
KS ci ratio: 3.108031e-01	ci left: 3.950838e-04	ci right 5.430590e-04	k: 158	n:340000
RINL   340000 perm   106 sec   (3196 perm/sec)   p_kst 4.647059e-04   p_cons 7.292676e-01   p_joint 7.205882e-04

Joint ci ratio: 2.449100e-01	ci left: 6.419113e-04	ci right 8.236624e-04	k: 255	n:350000
Cons ci ratio: 4.037551e-03	ci left: 7.277560e-01	ci right 7.307031e-01	k: 255231	n:350000
KS ci ratio: 3.050992e-01	ci left: 3.996142e-04	ci right 5.460062e-04	k: 164	n:350000
RINL   350000 perm   111 sec   (3156 perm/sec)   p_kst 4.685714e-04   p_cons 7.292314e-01   p_joint 7.285714e-04

Joint ci ratio: 2.407147e-01	ci left: 6.475597e-04	ci right 8.273007e-04	k: 264	n:360000
Cons ci ratio: 3.981984e-03	ci left: 7.276867e-01	ci right 7.305929e-01	k: 262491	n:360000
KS ci ratio: 3.005789e-01	ci left: 4.013476e-04	ci right 5.457802e-04	k: 169	n:360000
RINL   360000 perm   115 sec   (3118 perm/sec)   p_kst 4.694444e-04   p_cons 7.291417e-01   p_joint 7.333333e-04

Joint ci ratio: 2.384762e-01	ci left: 6.427602e-04	ci right 8.192647e-04	k: 269	n:370000
Cons ci ratio: 3.926311e-03	ci left: 7.278571e-01	ci right 7.307231e-01	k: 269838	n:370000
KS ci ratio: 2.997002e-01	ci left: 3.929993e-04	ci right 5.339354e-04	k: 170	n:370000
RINL   370000 perm   120 sec   (3081 perm/sec)   p_kst 4.594595e-04   p_cons 7.292919e-01   p_joint 7.270270e-04

Joint ci ratio: 2.354438e-01	ci left: 6.431730e-04	ci right 8.172178e-04	k: 276	n:380000
Cons ci ratio: 3.871953e-03	ci left: 7.281162e-01	ci right 7.309435e-01	k: 277222	n:380000
KS ci ratio: 2.954123e-01	ci left: 3.948331e-04	ci right 5.340216e-04	k: 175	n:380000
RINL   380000 perm   125 sec   (3045 perm/sec)   p_kst 4.605263e-04   p_cons 7.295316e-01   p_joint 7.263158e-04

Joint ci ratio: 2.341804e-01	ci left: 6.339208e-04	ci right 8.044080e-04	k: 279	n:390000
Cons ci ratio: 3.822148e-03	ci left: 7.281183e-01	ci right 7.309091e-01	k: 284511	n:390000
KS ci ratio: 2.945780e-01	ci left: 3.870833e-04	ci right 5.230824e-04	k: 176	n:390000
RINL   390000 perm   130 sec   (3009 perm/sec)   p_kst 4.512821e-04   p_cons 7.295154e-01   p_joint 7.153846e-04

Joint ci ratio: 2.309048e-01	ci left: 6.369078e-04	ci right 8.054608e-04	k: 287	n:400000
Cons ci ratio: 3.773450e-03	ci left: 7.282006e-01	ci right 7.309561e-01	k: 291832	n:400000
KS ci ratio: 2.905033e-01	ci left: 3.889892e-04	ci right 5.234199e-04	k: 181	n:400000
RINL   400000 perm   134 sec   (2976 perm/sec)   p_kst 4.525000e-04   p_cons 7.295800e-01   p_joint 7.175000e-04

Joint ci ratio: 2.285368e-01	ci left: 6.351654e-04	ci right 8.012903e-04	k: 293	n:410000
Cons ci ratio: 3.725048e-03	ci left: 7.284403e-01	ci right 7.311613e-01	k: 299219	n:410000
KS ci ratio: 2.881388e-01	ci left: 3.862877e-04	ci right 5.185003e-04	k: 184	n:410000
RINL   410000 perm   139 sec   (2943 perm/sec)   p_kst 4.487805e-04   p_cons 7.298024e-01   p_joint 7.146341e-04

Joint ci ratio: 2.247458e-01	ci left: 6.425006e-04	ci right 8.073706e-04	k: 303	n:420000
Cons ci ratio: 3.681035e-03	ci left: 7.283923e-01	ci right 7.310808e-01	k: 306490	n:420000
KS ci ratio: 2.843220e-01	ci left: 3.881407e-04	ci right 5.189120e-04	k: 189	n:420000
RINL   420000 perm   144 sec   (2911 perm/sec)   p_kst 4.500000e-04   p_cons 7.297381e-01   p_joint 7.214286e-04

Joint ci ratio: 2.229206e-01	ci left: 6.385345e-04	ci right 8.008735e-04	k: 308	n:430000
Cons ci ratio: 3.637603e-03	ci left: 7.284491e-01	ci right 7.311060e-01	k: 313805	n:430000
KS ci ratio: 2.828381e-01	ci left: 3.834344e-04	ci right 5.118256e-04	k: 191	n:430000
RINL   430000 perm   149 sec   (2879 perm/sec)   p_kst 4.441860e-04   p_cons 7.297791e-01   p_joint 7.162791e-04

Joint ci ratio: 2.204378e-01	ci left: 6.390482e-04	ci right 7.994628e-04	k: 315	n:440000
Cons ci ratio: 3.597600e-03	ci left: 7.282918e-01	ci right 7.309188e-01	k: 321027	n:440000
KS ci ratio: 2.792256e-01	ci left: 3.852829e-04	ci right 5.123555e-04	k: 196	n:440000
RINL   440000 perm   155 sec   (2848 perm/sec)   p_kst 4.454545e-04   p_cons 7.296068e-01   p_joint 7.159091e-04

Joint ci ratio: 2.180361e-01	ci left: 6.395485e-04	ci right 7.981054e-04	k: 322	n:450000
Cons ci ratio: 3.558084e-03	ci left: 7.282307e-01	ci right 7.308286e-01	k: 328289	n:450000
KS ci ratio: 2.750677e-01	ci left: 3.891280e-04	ci right 5.152272e-04	k: 202	n:450000
RINL   450000 perm   160 sec   (2817 perm/sec)   p_kst 4.488889e-04   p_cons 7.295311e-01   p_joint 7.155556e-04

Joint ci ratio: 2.153849e-01	ci left: 6.420928e-04	ci right 7.990889e-04	k: 330	n:460000
Cons ci ratio: 3.517264e-03	ci left: 7.284620e-01	ci right 7.310308e-01	k: 335684	n:460000
KS ci ratio: 2.717413e-01	ci left: 3.907933e-04	ci right 5.156394e-04	k: 207	n:460000
RINL   460000 perm   165 sec   (2786 perm/sec)   p_kst 4.500000e-04   p_cons 7.297478e-01   p_joint 7.173913e-04

Joint ci ratio: 2.137769e-01	ci left: 6.384977e-04	ci right 7.932964e-04	k: 335	n:470000
Cons ci ratio: 3.480105e-03	ci left: 7.284236e-01	ci right 7.309651e-01	k: 342957	n:470000
KS ci ratio: 2.691657e-01	ci left: 3.904122e-04	ci right 5.137547e-04	k: 211	n:470000
RINL   470000 perm   170 sec   (2757 perm/sec)   p_kst 4.489362e-04   p_cons 7.296957e-01   p_joint 7.127660e-04

Joint ci ratio: 2.118936e-01	ci left: 6.370294e-04	ci right 7.899347e-04	k: 341	n:480000
Cons ci ratio: 3.443717e-03	ci left: 7.284308e-01	ci right 7.309456e-01	k: 350251	n:480000
KS ci ratio: 2.654353e-01	ci left: 3.939411e-04	ci right 5.163870e-04	k: 217	n:480000
RINL   480000 perm   176 sec   (2729 perm/sec)   p_kst 4.520833e-04   p_cons 7.296896e-01   p_joint 7.104167e-04

Joint ci ratio: 2.085652e-01	ci left: 6.452963e-04	ci right 7.974423e-04	k: 352	n:490000
Cons ci ratio: 3.407407e-03	ci left: 7.285584e-01	ci right 7.310471e-01	k: 357604	n:490000
KS ci ratio: 2.618559e-01	ci left: 3.973373e-04	ci right 5.189006e-04	k: 223	n:490000
RINL   490000 perm   181 sec   (2701 perm/sec)   p_kst 4.551020e-04   p_cons 7.298041e-01   p_joint 7.183673e-04

Joint ci ratio: 2.071040e-01	ci left: 6.418698e-04	ci right 7.920134e-04	k: 357	n:500000
Cons ci ratio: 3.372665e-03	ci left: 7.286289e-01	ci right 7.310924e-01	k: 364931	n:500000
KS ci ratio: 2.595489e-01	ci left: 3.968678e-04	ci right 5.170443e-04	k: 227	n:500000
RINL   500000 perm   187 sec   (2673 perm/sec)   p_kst 4.540000e-04   p_cons 7.298620e-01   p_joint 7.140000e-04

Joint ci ratio: 2.051085e-01	ci left: 6.423012e-04	ci right 7.909166e-04	k: 364	n:510000
Cons ci ratio: 3.339148e-03	ci left: 7.286752e-01	ci right 7.311143e-01	k: 372247	n:510000
KS ci ratio: 2.573018e-01	ci left: 3.964212e-04	ci right 5.152562e-04	k: 231	n:510000
RINL   510000 perm   193 sec   (2646 perm/sec)   p_kst 4.529412e-04   p_cons 7.298961e-01   p_joint 7.137255e-04

Joint ci ratio: 2.031696e-01	ci left: 6.427227e-04	ci right 7.898553e-04	k: 371	n:520000
Cons ci ratio: 3.305578e-03	ci left: 7.288431e-01	ci right 7.312582e-01	k: 379627	n:520000
KS ci ratio: 2.551121e-01	ci left: 3.959961e-04	ci right 5.135327e-04	k: 235	n:520000
RINL   520000 perm   199 sec   (2616 perm/sec)   p_kst 4.519231e-04   p_cons 7.300519e-01   p_joint 7.134615e-04

Joint ci ratio: 2.020867e-01	ci left: 6.377600e-04	ci right 7.828822e-04	k: 375	n:530000
Cons ci ratio: 3.274331e-03	ci left: 7.288441e-01	ci right 7.312364e-01	k: 386922	n:530000
KS ci ratio: 2.529774e-01	ci left: 3.955911e-04	ci right 5.118701e-04	k: 239	n:530000
RINL   530000 perm   205 sec   (2590 perm/sec)   p_kst 4.509434e-04   p_cons 7.300415e-01   p_joint 7.075472e-04

Joint ci ratio: 1.991932e-01	ci left: 6.452969e-04	ci right 7.897764e-04	k: 386	n:540000
Cons ci ratio: 3.244137e-03	ci left: 7.288230e-01	ci right 7.311931e-01	k: 394205	n:540000
KS ci ratio: 2.508953e-01	ci left: 3.952051e-04	ci right 5.102652e-04	k: 243	n:540000
RINL   540000 perm   211 sec   (2564 perm/sec)   p_kst 4.500000e-04   p_cons 7.300093e-01   p_joint 7.148148e-04

Joint ci ratio: 1.986814e-01	ci left: 6.370192e-04	ci right 7.792345e-04	k: 388	n:550000
Cons ci ratio: 3.213918e-03	ci left: 7.289065e-01	ci right 7.312547e-01	k: 401545	n:550000
KS ci ratio: 2.498739e-01	ci left: 3.914276e-04	ci right 5.048518e-04	k: 245	n:550000
RINL   550000 perm   217 sec   (2540 perm/sec)   p_kst 4.454545e-04   p_cons 7.300818e-01   p_joint 7.054545e-04

Joint ci ratio: 1.971669e-01	ci left: 6.358272e-04	ci right 7.765642e-04	k: 394	n:560000
Cons ci ratio: 3.185667e-03	ci left: 7.288459e-01	ci right 7.311732e-01	k: 408806	n:560000
KS ci ratio: 2.468810e-01	ci left: 3.944854e-04	ci right 5.072163e-04	k: 251	n:560000
RINL   560000 perm   223 sec   (2517 perm/sec)   p_kst 4.482143e-04   p_cons 7.300107e-01   p_joint 7.035714e-04

Joint ci ratio: 1.959310e-01	ci left: 6.330125e-04	ci right 7.721435e-04	k: 399	n:570000
Cons ci ratio: 3.158318e-03	ci left: 7.287664e-01	ci right 7.310734e-01	k: 416055	n:570000
KS ci ratio: 2.449448e-01	ci left: 3.941497e-04	ci right 5.057669e-04	k: 255	n:570000
RINL   570000 perm   229 sec   (2493 perm/sec)   p_kst 4.473684e-04   p_cons 7.299211e-01   p_joint 7.000000e-04

Joint ci ratio: 1.949592e-01	ci left: 6.286574e-04	ci right 7.660645e-04	k: 403	n:580000
Cons ci ratio: 3.131085e-03	ci left: 7.287622e-01	ci right 7.310493e-01	k: 423346	n:580000
KS ci ratio: 2.430534e-01	ci left: 3.938289e-04	ci right 5.043642e-04	k: 259	n:580000
RINL   580000 perm   235 sec   (2469 perm/sec)   p_kst 4.465517e-04   p_cons 7.299069e-01   p_joint 6.948276e-04

Joint ci ratio: 1.930569e-01	ci left: 6.309030e-04	ci right 7.672973e-04	k: 411	n:590000
Cons ci ratio: 3.104625e-03	ci left: 7.287481e-01	ci right 7.310158e-01	k: 430631	n:590000
KS ci ratio: 2.402962e-01	ci left: 3.967076e-04	ci right 5.065997e-04	k: 265	n:590000
RINL   590000 perm   241 sec   (2446 perm/sec)   p_kst 4.491525e-04   p_cons 7.298831e-01   p_joint 6.966102e-04

Joint ci ratio: 1.923585e-01	ci left: 6.251465e-04	ci right 7.597502e-04	k: 414	n:600000
Cons ci ratio: 3.078681e-03	ci left: 7.287529e-01	ci right 7.310016e-01	k: 437927	n:600000
KS ci ratio: 2.389528e-01	ci left: 3.947956e-04	ci right 5.034561e-04	k: 268	n:600000
RINL   600000 perm   247 sec   (2424 perm/sec)   p_kst 4.466667e-04   p_cons 7.298783e-01   p_joint 6.900000e-04

Joint ci ratio: 1.914386e-01	ci left: 6.211405e-04	ci right 7.541675e-04	k: 418	n:610000
Cons ci ratio: 3.053174e-03	ci left: 7.287839e-01	ci right 7.310140e-01	k: 445239	n:610000
KS ci ratio: 2.376317e-01	ci left: 3.929479e-04	ci right 5.004139e-04	k: 271	n:610000
RINL   610000 perm   254 sec   (2403 perm/sec)   p_kst 4.442623e-04   p_cons 7.299000e-01   p_joint 6.852459e-04

Joint ci ratio: 1.898592e-01	ci left: 6.218735e-04	ci right 7.538321e-04	k: 425	n:620000
Cons ci ratio: 3.028402e-03	ci left: 7.287994e-01	ci right 7.310114e-01	k: 452542	n:620000
KS ci ratio: 2.350531e-01	ci left: 3.957145e-04	ci right 5.025920e-04	k: 277	n:620000
RINL   620000 perm   260 sec   (2381 perm/sec)   p_kst 4.467742e-04   p_cons 7.299065e-01   p_joint 6.854839e-04

Joint ci ratio: 1.868132e-01	ci left: 6.331774e-04	ci right 7.651347e-04	k: 439	n:630000
Cons ci ratio: 3.004840e-03	ci left: 7.287334e-01	ci right 7.309280e-01	k: 459794	n:630000
KS ci ratio: 2.325566e-01	ci left: 3.983994e-04	ci right 5.046949e-04	k: 283	n:630000
RINL   630000 perm   267 sec   (2360 perm/sec)   p_kst 4.492063e-04   p_cons 7.298317e-01   p_joint 6.968254e-04

Joint ci ratio: 1.851376e-01	ci left: 6.352022e-04	ci right 7.662607e-04	k: 447	n:640000
Cons ci ratio: 2.981016e-03	ci left: 7.287760e-01	ci right 7.309532e-01	k: 467114	n:640000
KS ci ratio: 2.301380e-01	ci left: 4.010061e-04	ci right 5.067263e-04	k: 289	n:640000
RINL   640000 perm   274 sec   (2339 perm/sec)   p_kst 4.515625e-04   p_cons 7.298656e-01   p_joint 6.984375e-04

Joint ci ratio: 1.843170e-01	ci left: 6.312990e-04	ci right 7.609104e-04	k: 451	n:650000
Cons ci ratio: 2.958304e-03	ci left: 7.287433e-01	ci right 7.309039e-01	k: 474386	n:650000
KS ci ratio: 2.293489e-01	ci left: 3.977366e-04	ci right 5.021844e-04	k: 291	n:650000
RINL   650000 perm   281 sec   (2317 perm/sec)   p_kst 4.476923e-04   p_cons 7.298246e-01   p_joint 6.938462e-04

Joint ci ratio: 1.831059e-01	ci left: 6.304067e-04	ci right 7.588900e-04	k: 457	n:660000
Cons ci ratio: 2.935596e-03	ci left: 7.287800e-01	ci right 7.309240e-01	k: 481703	n:660000
KS ci ratio: 2.274101e-01	ci left: 3.988527e-04	ci right 5.025839e-04	k: 296	n:660000
RINL   660000 perm   287 sec   (2296 perm/sec)   p_kst 4.484848e-04   p_cons 7.298530e-01   p_joint 6.924242e-04

Joint ci ratio: 1.819183e-01	ci left: 6.295437e-04	ci right 7.569272e-04	k: 463	n:670000
Cons ci ratio: 2.914472e-03	ci left: 7.286707e-01	ci right 7.307990e-01	k: 488923	n:670000
KS ci ratio: 2.255196e-01	ci left: 3.999390e-04	ci right 5.029680e-04	k: 301	n:670000
RINL   670000 perm   294 sec   (2276 perm/sec)   p_kst 4.492537e-04   p_cons 7.297358e-01   p_joint 6.910448e-04

Joint ci ratio: 1.792335e-01	ci left: 6.399437e-04	ci right 7.673133e-04	k: 477	n:680000
Cons ci ratio: 2.891920e-03	ci left: 7.288209e-01	ci right 7.309331e-01	k: 496317	n:680000
KS ci ratio: 2.218752e-01	ci left: 4.079397e-04	ci right 5.110996e-04	k: 311	n:680000
RINL   680000 perm   301 sec   (2256 perm/sec)   p_kst 4.573529e-04   p_cons 7.298779e-01   p_joint 7.014706e-04

Joint ci ratio: 1.779353e-01	ci left: 6.403606e-04	ci right 7.667908e-04	k: 484	n:690000
Cons ci ratio: 2.870284e-03	ci left: 7.289116e-01	ci right 7.310082e-01	k: 503673	n:690000
KS ci ratio: 2.201184e-01	ci left: 4.088728e-04	ci right 5.113392e-04	k: 316	n:690000
RINL   690000 perm   309 sec   (2234 perm/sec)   p_kst 4.579710e-04   p_cons 7.299609e-01   p_joint 7.014493e-04

Joint ci ratio: 1.761285e-01	ci left: 6.448654e-04	ci right 7.707545e-04	k: 494	n:700000
Cons ci ratio: 2.849405e-03	ci left: 7.289612e-01	ci right 7.310426e-01	k: 511002	n:700000
KS ci ratio: 2.177272e-01	ci left: 4.124836e-04	ci right 5.145817e-04	k: 323	n:700000
RINL   700000 perm   316 sec   (2215 perm/sec)   p_kst 4.614286e-04   p_cons 7.300029e-01   p_joint 7.057143e-04

Joint ci ratio: 1.748962e-01	ci left: 6.452089e-04	ci right 7.701907e-04	k: 501	n:710000
Cons ci ratio: 2.829308e-03	ci left: 7.289629e-01	ci right 7.310296e-01	k: 518298	n:710000
KS ci ratio: 2.157386e-01	ci left: 4.146660e-04	ci right 5.162427e-04	k: 329	n:710000
RINL   710000 perm   323 sec   (2197 perm/sec)   p_kst 4.633803e-04   p_cons 7.299972e-01   p_joint 7.056338e-04

Joint ci ratio: 1.735189e-01	ci left: 6.468743e-04	ci right 7.710886e-04	k: 509	n:720000
Cons ci ratio: 2.809799e-03	ci left: 7.289409e-01	ci right 7.309933e-01	k: 525577	n:720000
KS ci ratio: 2.138035e-01	ci left: 4.167919e-04	ci right 5.178535e-04	k: 335	n:720000
RINL   720000 perm   331 sec   (2178 perm/sec)   p_kst 4.652778e-04   p_cons 7.299681e-01   p_joint 7.069444e-04

Joint ci ratio: 1.718420e-01	ci left: 6.511197e-04	ci right 7.748157e-04	k: 519	n:730000
Cons ci ratio: 2.790562e-03	ci left: 7.289375e-01	ci right 7.309758e-01	k: 532869	n:730000
KS ci ratio: 2.119195e-01	ci left: 4.188635e-04	ci right 5.194162e-04	k: 341	n:730000
RINL   730000 perm   338 sec   (2160 perm/sec)   p_kst 4.671233e-04   p_cons 7.299575e-01   p_joint 7.109589e-04

Joint ci ratio: 1.711852e-01	ci left: 6.474941e-04	ci right 7.699826e-04	k: 523	n:740000
Cons ci ratio: 2.772199e-03	ci left: 7.288651e-01	ci right 7.308898e-01	k: 540110	n:740000
KS ci ratio: 2.113030e-01	ci left: 4.157626e-04	ci right 5.152429e-04	k: 343	n:740000
RINL   740000 perm   345 sec   (2143 perm/sec)   p_kst 4.635135e-04   p_cons 7.298784e-01   p_joint 7.067568e-04

Joint ci ratio: 1.534522e-01	ci left: 8.026202e-04	ci right 9.372830e-04	k: 651	n:750000
Cons ci ratio: 2.753728e-03	ci left: 7.288615e-01	ci right 7.308727e-01	k: 547401	n:750000
KS ci ratio: 2.097838e-01	ci left: 4.165343e-04	ci right 5.153906e-04	k: 348	n:750000
RINL   750000 perm   353 sec   (2126 perm/sec)   p_kst 4.640000e-04   p_cons 7.298680e-01   p_joint 8.680000e-04

Joint ci ratio: 1.525194e-01	ci left: 8.021828e-04	ci right 9.358793e-04	k: 659	n:760000
Cons ci ratio: 2.735184e-03	ci left: 7.289213e-01	ci right 7.309190e-01	k: 554740	n:760000
KS ci ratio: 2.077108e-01	ci left: 4.197827e-04	ci right 5.183004e-04	k: 355	n:760000
RINL   760000 perm   360 sec   (2109 perm/sec)   p_kst 4.671053e-04   p_cons 7.299211e-01   p_joint 8.671053e-04

Joint ci ratio: 1.512639e-01	ci left: 8.055077e-04	ci right 9.385532e-04	k: 670	n:770000
Cons ci ratio: 2.717519e-03	ci left: 7.289054e-01	ci right 7.308902e-01	k: 562022	n:770000
KS ci ratio: 2.065537e-01	ci left: 4.192564e-04	ci right 5.170331e-04	k: 359	n:770000
RINL   770000 perm   368 sec   (2092 perm/sec)   p_kst 4.662338e-04   p_cons 7.298987e-01   p_joint 8.701299e-04

Joint ci ratio: 1.507038e-01	ci left: 8.013486e-04	ci right 9.331728e-04	k: 675	n:780000
Cons ci ratio: 2.700525e-03	ci left: 7.288413e-01	ci right 7.308134e-01	k: 569266	n:780000
KS ci ratio: 2.056986e-01	ci left: 4.175289e-04	ci right 5.144489e-04	k: 362	n:780000
RINL   780000 perm   376 sec   (2076 perm/sec)   p_kst 4.641026e-04   p_cons 7.298282e-01   p_joint 8.653846e-04

Joint ci ratio: 1.499297e-01	ci left: 7.997324e-04	ci right 9.305544e-04	k: 682	n:790000
Cons ci ratio: 2.683304e-03	ci left: 7.288586e-01	ci right 7.308182e-01	k: 576573	n:790000
KS ci ratio: 2.045747e-01	ci left: 4.170469e-04	ci right 5.132600e-04	k: 366	n:790000
RINL   790000 perm   384 sec   (2058 perm/sec)   p_kst 4.632911e-04   p_cons 7.298392e-01   p_joint 8.632911e-04

Joint ci ratio: 1.487365e-01	ci left: 8.029721e-04	ci right 9.331857e-04	k: 693	n:800000
Cons ci ratio: 2.666678e-03	ci left: 7.288355e-01	ci right 7.307829e-01	k: 583848	n:800000
KS ci ratio: 2.034689e-01	ci left: 4.165784e-04	ci right 5.120993e-04	k: 370	n:800000
RINL   800000 perm   392 sec   (2041 perm/sec)   p_kst 4.625000e-04   p_cons 7.298100e-01   p_joint 8.662500e-04

Joint ci ratio: 1.477813e-01	ci left: 8.037578e-04	ci right 9.331879e-04	k: 702	n:810000
Cons ci ratio: 2.649843e-03	ci left: 7.288896e-01	ci right 7.308248e-01	k: 591185	n:810000
KS ci ratio: 2.021115e-01	ci left: 4.172948e-04	ci right 5.122629e-04	k: 375	n:810000
RINL   810000 perm   400 sec   (2025 perm/sec)   p_kst 4.629630e-04   p_cons 7.298580e-01   p_joint 8.666667e-04

Joint ci ratio: 1.469476e-01	ci left: 8.033523e-04	ci right 9.319231e-04	k: 710	n:820000
Cons ci ratio: 2.633780e-03	ci left: 7.288741e-01	ci right 7.307975e-01	k: 598466	n:820000
KS ci ratio: 2.010450e-01	ci left: 4.168377e-04	ci right 5.111398e-04	k: 379	n:820000
RINL   820000 perm   408 sec   (2010 perm/sec)   p_kst 4.621951e-04   p_cons 7.298366e-01   p_joint 8.658537e-04

Joint ci ratio: 1.387868e-01	ci left: 8.935899e-04	ci right 1.028004e-03	k: 796	n:830000
Cons ci ratio: 2.617796e-03	ci left: 7.288903e-01	ci right 7.308021e-01	k: 605773	n:830000
KS ci ratio: 1.999953e-01	ci left: 4.163929e-04	ci right 5.100424e-04	k: 383	n:830000
RINL   830000 perm   416 sec   (1994 perm/sec)   p_kst 4.614458e-04   p_cons 7.298470e-01   p_joint 9.590361e-04

Joint ci ratio: 1.455222e-01	ci left: 8.002816e-04	ci right 9.270107e-04	k: 724	n:840000
Cons ci ratio: 2.602352e-03	ci left: 7.288681e-01	ci right 7.307685e-01	k: 613048	n:840000
KS ci ratio: 1.987057e-01	ci left: 4.170911e-04	ci right 5.102196e-04	k: 388	n:840000
RINL   840000 perm   424 sec   (1979 perm/sec)   p_kst 4.619048e-04   p_cons 7.298190e-01   p_joint 8.619048e-04

Joint ci ratio: 1.371615e-01	ci left: 8.941456e-04	ci right 1.026940e-03	k: 815	n:850000
Cons ci ratio: 2.587255e-03	ci left: 7.288346e-01	ci right 7.307239e-01	k: 620313	n:850000
KS ci ratio: 1.974409e-01	ci left: 4.177748e-04	ci right 5.103907e-04	k: 393	n:850000
RINL   850000 perm   433 sec   (1965 perm/sec)   p_kst 4.623529e-04   p_cons 7.297800e-01   p_joint 9.588235e-04

Joint ci ratio: 1.368270e-01	ci left: 8.882402e-04	ci right 1.019810e-03	k: 819	n:860000
Cons ci ratio: 2.572592e-03	ci left: 7.287751e-01	ci right 7.306535e-01	k: 627555	n:860000
KS ci ratio: 1.969419e-01	ci left: 4.151277e-04	ci right 5.068962e-04	k: 395	n:860000
RINL   860000 perm   441 sec   (1950 perm/sec)   p_kst 4.593023e-04   p_cons 7.297151e-01   p_joint 9.523256e-04

Joint ci ratio: 1.360823e-01	ci left: 8.880222e-04	ci right 1.018785e-03	k: 828	n:870000
Cons ci ratio: 2.557646e-03	ci left: 7.287988e-01	ci right 7.306663e-01	k: 634868	n:870000
KS ci ratio: 1.966942e-01	ci left: 4.114488e-04	ci right 5.022759e-04	k: 396	n:870000
RINL   870000 perm   449 sec   (1936 perm/sec)   p_kst 4.551724e-04   p_cons 7.297333e-01   p_joint 9.517241e-04

Joint ci ratio: 1.351882e-01	ci left: 8.900069e-04	ci right 1.020132e-03	k: 839	n:880000
Cons ci ratio: 2.542599e-03	ci left: 7.288777e-01	ci right 7.307344e-01	k: 642230	n:880000
KS ci ratio: 1.952243e-01	ci left: 4.132570e-04	ci right 5.037205e-04	k: 402	n:880000
RINL   880000 perm   458 sec   (1922 perm/sec)   p_kst 4.568182e-04   p_cons 7.298068e-01   p_joint 9.534091e-04

Joint ci ratio: 1.342326e-01	ci left: 8.930357e-04	ci right 1.022607e-03	k: 851	n:890000
Cons ci ratio: 2.528231e-03	ci left: 7.288896e-01	ci right 7.307358e-01	k: 649534	n:890000
KS ci ratio: 1.945018e-01	ci left: 4.118199e-04	ci right 5.015958e-04	k: 405	n:890000
RINL   890000 perm   467 sec   (1907 perm/sec)   p_kst 4.550562e-04   p_cons 7.298135e-01   p_joint 9.561798e-04

Joint ci ratio: 1.331428e-01	ci left: 8.981485e-04	ci right 1.027320e-03	k: 865	n:900000
Cons ci ratio: 2.513899e-03	ci left: 7.289336e-01	ci right 7.307694e-01	k: 656867	n:900000
KS ci ratio: 1.935508e-01	ci left: 4.114727e-04	ci right 5.006826e-04	k: 409	n:900000
RINL   900000 perm   475 sec   (1893 perm/sec)   p_kst 4.544444e-04   p_cons 7.298522e-01   p_joint 9.611111e-04

Joint ci ratio: 1.324564e-01	ci left: 8.978403e-04	ci right 1.026249e-03	k: 874	n:910000
Cons ci ratio: 2.499683e-03	ci left: 7.289964e-01	ci right 7.308220e-01	k: 664218	n:910000
KS ci ratio: 1.928467e-01	ci left: 4.100882e-04	ci right 4.986366e-04	k: 412	n:910000
RINL   910000 perm   484 sec   (1879 perm/sec)   p_kst 4.527473e-04   p_cons 7.299099e-01   p_joint 9.604396e-04

Joint ci ratio: 1.321551e-01	ci left: 8.922849e-04	ci right 1.019586e-03	k: 878	n:920000
Cons ci ratio: 2.486239e-03	ci left: 7.289729e-01	ci right 7.307887e-01	k: 671491	n:920000
KS ci ratio: 1.923817e-01	ci left: 4.076998e-04	ci right 4.954953e-04	k: 414	n:920000
RINL   920000 perm   493 sec   (1865 perm/sec)   p_kst 4.500000e-04   p_cons 7.298815e-01   p_joint 9.543478e-04

Joint ci ratio: 1.312619e-01	ci left: 8.951686e-04	ci right 1.021951e-03	k: 890	n:930000
Cons ci ratio: 2.472444e-03	ci left: 7.290405e-01	ci right 7.308463e-01	k: 678848	n:930000
KS ci ratio: 1.912331e-01	ci left: 4.084341e-04	ci right 4.958016e-04	k: 419	n:930000
RINL   930000 perm   502 sec   (1851 perm/sec)   p_kst 4.505376e-04   p_cons 7.299441e-01   p_joint 9.569892e-04

Joint ci ratio: 1.306767e-01	ci left: 8.938773e-04	ci right 1.019869e-03	k: 898	n:940000
Cons ci ratio: 2.459281e-03	ci left: 7.290416e-01	ci right 7.308378e-01	k: 686144	n:940000
KS ci ratio: 1.905539e-01	ci left: 4.071280e-04	ci right 4.938710e-04	k: 422	n:940000
RINL   940000 perm   511 sec   (1838 perm/sec)   p_kst 4.489362e-04   p_cons 7.299404e-01   p_joint 9.553191e-04

Joint ci ratio: 1.303151e-01	ci left: 8.895593e-04	ci right 1.014568e-03	k: 903	n:950000
Cons ci ratio: 2.446913e-03	ci left: 7.289480e-01	ci right 7.307348e-01	k: 693350	n:950000
KS ci ratio: 1.903294e-01	ci left: 4.038448e-04	ci right 4.897752e-04	k: 423	n:950000
RINL   950000 perm   520 sec   (1825 perm/sec)   p_kst 4.452632e-04   p_cons 7.298421e-01   p_joint 9.505263e-04

Joint ci ratio: 1.298851e-01	ci left: 8.863395e-04	ci right 1.010453e-03	k: 909	n:960000
Cons ci ratio: 2.434131e-03	ci left: 7.289532e-01	ci right 7.307308e-01	k: 700649	n:960000
KS ci ratio: 1.896598e-01	ci left: 4.026144e-04	ci right 4.879468e-04	k: 426	n:960000
RINL   960000 perm   530 sec   (1813 perm/sec)   p_kst 4.437500e-04   p_cons 7.298427e-01   p_joint 9.468750e-04

Joint ci ratio: 1.295300e-01	ci left: 8.821892e-04	ci right 1.005358e-03	k: 914	n:970000
Cons ci ratio: 2.421257e-03	ci left: 7.290059e-01	ci right 7.307742e-01	k: 707994	n:970000
KS ci ratio: 1.892174e-01	ci left: 4.004278e-04	ci right 4.850761e-04	k: 428	n:970000
RINL   970000 perm   539 sec   (1801 perm/sec)   p_kst 4.412371e-04   p_cons 7.298907e-01   p_joint 9.422680e-04

Joint ci ratio: 1.287583e-01	ci left: 8.840492e-04	ci right 1.006686e-03	k: 925	n:980000
Cons ci ratio: 2.408522e-03	ci left: 7.290677e-01	ci right 7.308268e-01	k: 715349	n:980000
KS ci ratio: 1.881243e-01	ci left: 4.012029e-04	ci right 4.854690e-04	k: 433	n:980000
RINL   980000 perm   548 sec   (1789 perm/sec)   p_kst 4.418367e-04   p_cons 7.299480e-01   p_joint 9.438776e-04

Joint ci ratio: 1.281371e-01	ci left: 8.839182e-04	ci right 1.005901e-03	k: 934	n:990000
Cons ci ratio: 2.395913e-03	ci left: 7.291405e-01	ci right 7.308905e-01	k: 722716	n:990000
KS ci ratio: 1.870498e-01	ci left: 4.019637e-04	ci right 4.858527e-04	k: 438	n:990000
RINL   990000 perm   557 sec   (1777 perm/sec)   p_kst 4.424242e-04   p_cons 7.300162e-01   p_joint 9.434343e-04

Joint ci ratio: 1.277281e-01	ci left: 8.808869e-04	ci right 1.002034e-03	k: 940	n:1000000
Cons ci ratio: 2.383583e-03	ci left: 7.291978e-01	ci right 7.309389e-01	k: 730069	n:1000000
KS ci ratio: 1.864141e-01	ci left: 4.008038e-04	ci right 4.841343e-04	k: 441	n:1000000
RINL   1000000 perm   566 sec   (1765 perm/sec)   p_kst 4.410000e-04   p_cons 7.300690e-01   p_joint 9.400000e-04

Joint ci ratio: 1.271887e-01	ci left: 8.798335e-04	ci right 1.000286e-03	k: 948	n:1010000
Cons ci ratio: 2.371848e-03	ci left: 7.291865e-01	ci right 7.309191e-01	k: 737354	n:1010000
KS ci ratio: 1.859940e-01	ci left: 3.987233e-04	ci right 4.814133e-04	k: 443	n:1010000
RINL   1010000 perm   576 sec   (1754 perm/sec)   p_kst 4.386139e-04   p_cons 7.300535e-01   p_joint 9.386139e-04

Joint ci ratio: 1.265238e-01	ci left: 8.807005e-04	ci right 1.000594e-03	k: 958	n:1020000
Cons ci ratio: 2.360148e-03	ci left: 7.291981e-01	ci right 7.309221e-01	k: 744662	n:1020000
KS ci ratio: 1.851618e-01	ci left: 3.985536e-04	ci right 4.807971e-04	k: 447	n:1020000
RINL   1020000 perm   585 sec   (1742 perm/sec)   p_kst 4.382353e-04   p_cons 7.300608e-01   p_joint 9.392157e-04

Joint ci ratio: 1.258043e-01	ci left: 8.824926e-04	ci right 1.001896e-03	k: 969	n:1030000
Cons ci ratio: 2.348974e-03	ci left: 7.291502e-01	ci right 7.308659e-01	k: 751909	n:1030000
KS ci ratio: 1.841371e-01	ci left: 3.993142e-04	ci right 4.812077e-04	k: 452	n:1030000
RINL   1030000 perm   595 sec   (1731 perm/sec)   p_kst 4.388350e-04   p_cons 7.300087e-01   p_joint 9.407767e-04

Joint ci ratio: 1.250331e-01	ci left: 8.851837e-04	ci right 1.004162e-03	k: 981	n:1040000
Cons ci ratio: 2.338059e-03	ci left: 7.290860e-01	ci right 7.307935e-01	k: 759138	n:1040000
KS ci ratio: 1.827304e-01	ci left: 4.018964e-04	ci right 4.836201e-04	k: 459	n:1040000
RINL   1040000 perm   605 sec   (1720 perm/sec)   p_kst 4.413462e-04   p_cons 7.299404e-01   p_joint 9.432692e-04

Joint ci ratio: 1.244013e-01	ci left: 8.859801e-04	ci right 1.004420e-03	k: 991	n:1050000
Cons ci ratio: 2.326451e-03	ci left: 7.291659e-01	ci right 7.308652e-01	k: 766517	n:1050000
KS ci ratio: 1.823347e-01	ci left: 3.998865e-04	ci right 4.810059e-04	k: 461	n:1050000
RINL   1050000 perm   614 sec   (1709 perm/sec)   p_kst 4.390476e-04   p_cons 7.300162e-01   p_joint 9.438095e-04

Joint ci ratio: 1.238408e-01	ci left: 8.858487e-04	ci right 1.003698e-03	k: 1000	n:1060000
Cons ci ratio: 2.315796e-03	ci left: 7.291112e-01	ci right 7.308026e-01	k: 773755	n:1060000
KS ci ratio: 1.811620e-01	ci left: 4.015169e-04	ci right 4.823857e-04	k: 467	n:1060000
RINL   1060000 perm   624 sec   (1698 perm/sec)   p_kst 4.405660e-04   p_cons 7.299575e-01   p_joint 9.433962e-04

Joint ci ratio: 1.234102e-01	ci left: 8.839094e-04	ci right 1.001062e-03	k: 1007	n:1070000
Cons ci ratio: 2.304706e-03	ci left: 7.291568e-01	ci right 7.308401e-01	k: 781099	n:1070000
KS ci ratio: 1.805842e-01	ci left: 4.004412e-04	ci right 4.808080e-04	k: 470	n:1070000
RINL   1070000 perm   634 sec   (1687 perm/sec)   p_kst 4.392523e-04   p_cons 7.299991e-01   p_joint 9.411215e-04

Joint ci ratio: 1.228025e-01	ci left: 8.846992e-04	ci right 1.001337e-03	k: 1017	n:1080000
Cons ci ratio: 2.293850e-03	ci left: 7.291885e-01	ci right 7.308640e-01	k: 788429	n:1080000
KS ci ratio: 1.798223e-01	ci left: 4.002700e-04	ci right 4.802267e-04	k: 474	n:1080000
RINL   1080000 perm   645 sec   (1676 perm/sec)   p_kst 4.388889e-04   p_cons 7.300269e-01   p_joint 9.416667e-04

Joint ci ratio: 1.222037e-01	ci left: 8.854759e-04	ci right 1.001606e-03	k: 1027	n:1090000
Cons ci ratio: 2.283544e-03	ci left: 7.291508e-01	ci right 7.308186e-01	k: 795684	n:1090000
KS ci ratio: 1.786971e-01	ci left: 4.018554e-04	ci right 4.815722e-04	k: 480	n:1090000
RINL   1090000 perm   654 sec   (1665 perm/sec)   p_kst 4.403670e-04   p_cons 7.299853e-01   p_joint 9.422018e-04

Joint ci ratio: 1.216723e-01	ci left: 8.853584e-04	ci right 1.000932e-03	k: 1036	n:1100000
Cons ci ratio: 2.273265e-03	ci left: 7.291329e-01	ci right 7.307932e-01	k: 802960	n:1100000
KS ci ratio: 1.774106e-01	ci left: 4.042823e-04	ci right 4.838412e-04	k: 487	n:1100000
RINL   1100000 perm   665 sec   (1655 perm/sec)   p_kst 4.427273e-04   p_cons 7.299636e-01   p_joint 9.418182e-04

Joint ci ratio: 1.211477e-01	ci left: 8.852440e-04	ci right 1.000269e-03	k: 1045	n:1110000
Cons ci ratio: 2.263202e-03	ci left: 7.291018e-01	ci right 7.307547e-01	k: 810221	n:1110000
KS ci ratio: 1.765086e-01	ci left: 4.049451e-04	ci right 4.841861e-04	k: 492	n:1110000
RINL   1110000 perm   675 sec   (1645 perm/sec)   p_kst 4.432432e-04   p_cons 7.299288e-01   p_joint 9.414414e-04

Joint ci ratio: 1.203448e-01	ci left: 8.894627e-04	ci right 1.004215e-03	k: 1059	n:1120000
Cons ci ratio: 2.252766e-03	ci left: 7.291598e-01	ci right 7.308051e-01	k: 817581	n:1120000
KS ci ratio: 1.756203e-01	ci left: 4.055971e-04	ci right 4.845238e-04	k: 497	n:1120000
RINL   1120000 perm   685 sec   (1635 perm/sec)   p_kst 4.437500e-04   p_cons 7.299830e-01   p_joint 9.455357e-04

Joint ci ratio: 1.198372e-01	ci left: 8.893167e-04	ci right 1.003532e-03	k: 1068	n:1130000
Cons ci ratio: 2.242830e-03	ci left: 7.291538e-01	ci right 7.307919e-01	k: 824870	n:1130000
KS ci ratio: 1.749192e-01	ci left: 4.053923e-04	ci right 4.839309e-04	k: 501	n:1130000
RINL   1130000 perm   696 sec   (1625 perm/sec)   p_kst 4.433628e-04   p_cons 7.299735e-01   p_joint 9.451327e-04

Joint ci ratio: 1.196139e-01	ci left: 8.849192e-04	ci right 9.983427e-04	k: 1072	n:1140000
Cons ci ratio: 2.233239e-03	ci left: 7.291103e-01	ci right 7.307412e-01	k: 832116	n:1140000
KS ci ratio: 1.745720e-01	ci left: 4.035138e-04	ci right 4.815170e-04	k: 503	n:1140000
RINL   1140000 perm   706 sec   (1615 perm/sec)   p_kst 4.412281e-04   p_cons 7.299263e-01   p_joint 9.403509e-04

Joint ci ratio: 1.191154e-01	ci left: 8.848167e-04	ci right 9.977212e-04	k: 1081	n:1150000
Cons ci ratio: 2.223489e-03	ci left: 7.291171e-01	ci right 7.307409e-01	k: 839419	n:1150000
KS ci ratio: 1.740549e-01	ci left: 4.024999e-04	ci right 4.800523e-04	k: 506	n:1150000
RINL   1150000 perm   716 sec   (1605 perm/sec)   p_kst 4.400000e-04   p_cons 7.299296e-01   p_joint 9.400000e-04

Joint ci ratio: 1.184060e-01	ci left: 8.880630e-04	ci right 1.000660e-03	k: 1094	n:1160000
Cons ci ratio: 2.214283e-03	ci left: 7.290496e-01	ci right 7.306665e-01	k: 846636	n:1160000
KS ci ratio: 1.726974e-01	ci left: 4.056274e-04	ci right 4.831094e-04	k: 514	n:1160000
RINL   1160000 perm   727 sec   (1595 perm/sec)   p_kst 4.431034e-04   p_cons 7.298586e-01   p_joint 9.431034e-04

Joint ci ratio: 1.180831e-01	ci left: 8.854492e-04	ci right 9.973869e-04	k: 1100	n:1170000
Cons ci ratio: 2.205228e-03	ci left: 7.289764e-01	ci right 7.305866e-01	k: 853845	n:1170000
KS ci ratio: 1.723632e-01	ci left: 4.037960e-04	ci right 4.807634e-04	k: 516	n:1170000
RINL   1170000 perm   738 sec   (1586 perm/sec)   p_kst 4.410256e-04   p_cons 7.297821e-01   p_joint 9.401709e-04

Joint ci ratio: 1.176034e-01	ci left: 8.853477e-04	ci right 9.967863e-04	k: 1109	n:1180000
Cons ci ratio: 2.195986e-03	ci left: 7.289579e-01	ci right 7.305613e-01	k: 861117	n:1180000
KS ci ratio: 1.717003e-01	ci left: 4.036179e-04	ci right 4.802248e-04	k: 520	n:1180000
RINL   1180000 perm   749 sec   (1576 perm/sec)   p_kst 4.406780e-04   p_cons 7.297602e-01   p_joint 9.398305e-04

Joint ci ratio: 1.169727e-01	ci left: 8.876960e-04	ci right 9.987896e-04	k: 1121	n:1190000
Cons ci ratio: 2.187017e-03	ci left: 7.289112e-01	ci right 7.305079e-01	k: 868355	n:1190000
KS ci ratio: 1.708823e-01	ci left: 4.042477e-04	ci right 4.805709e-04	k: 525	n:1190000
RINL   1190000 perm   759 sec   (1567 perm/sec)   p_kst 4.411765e-04   p_cons 7.297101e-01   p_joint 9.420168e-04

Joint ci ratio: 1.165064e-01	ci left: 8.875796e-04	ci right 9.981853e-04	k: 1130	n:1200000
Cons ci ratio: 2.177711e-03	ci left: 7.289461e-01	ci right 7.305361e-01	k: 875690	n:1200000
KS ci ratio: 1.700758e-01	ci left: 4.048679e-04	ci right 4.809105e-04	k: 530	n:1200000
RINL   1200000 perm   770 sec   (1559 perm/sec)   p_kst 4.416667e-04   p_cons 7.297417e-01   p_joint 9.416667e-04

Joint ci ratio: 1.159439e-01	ci left: 8.890709e-04	ci right 9.992909e-04	k: 1141	n:1210000
Cons ci ratio: 2.168873e-03	ci left: 7.289168e-01	ci right 7.305003e-01	k: 882948	n:1210000
KS ci ratio: 1.689656e-01	ci left: 4.070616e-04	ci right 4.829663e-04	k: 537	n:1210000
RINL   1210000 perm   781 sec   (1550 perm/sec)   p_kst 4.438017e-04   p_cons 7.297091e-01   p_joint 9.429752e-04

Joint ci ratio: 1.154897e-01	ci left: 8.889469e-04	ci right 9.986904e-04	k: 1150	n:1220000
Cons ci ratio: 2.159827e-03	ci left: 7.289454e-01	ci right 7.305223e-01	k: 890276	n:1220000
KS ci ratio: 1.681858e-01	ci left: 4.076505e-04	ci right 4.832786e-04	k: 542	n:1220000
RINL   1220000 perm   792 sec   (1540 perm/sec)   p_kst 4.442623e-04   p_cons 7.297344e-01   p_joint 9.426230e-04

Joint ci ratio: 1.149912e-01	ci left: 8.896155e-04	ci right 9.989353e-04	k: 1160	n:1230000
Cons ci ratio: 2.150907e-03	ci left: 7.289712e-01	ci right 7.305416e-01	k: 897601	n:1230000
KS ci ratio: 1.675698e-01	ci left: 4.074517e-04	ci right 4.827381e-04	k: 546	n:1230000
RINL   1230000 perm   803 sec   (1532 perm/sec)   p_kst 4.439024e-04   p_cons 7.297569e-01   p_joint 9.430894e-04

Joint ci ratio: 1.147446e-01	ci left: 8.863575e-04	ci right 9.950276e-04	k: 1165	n:1240000
Cons ci ratio: 2.142333e-03	ci left: 7.289529e-01	ci right 7.305170e-01	k: 904872	n:1240000
KS ci ratio: 1.669604e-01	ci left: 4.072565e-04	ci right 4.822058e-04	k: 550	n:1240000
RINL   1240000 perm   814 sec   (1523 perm/sec)   p_kst 4.435484e-04   p_cons 7.297355e-01   p_joint 9.395161e-04

Joint ci ratio: 1.142557e-01	ci left: 8.870375e-04	ci right 9.952963e-04	k: 1175	n:1250000
Cons ci ratio: 2.133990e-03	ci left: 7.289109e-01	ci right 7.304688e-01	k: 912113	n:1250000
KS ci ratio: 1.663577e-01	ci left: 4.070650e-04	ci right 4.816815e-04	k: 554	n:1250000
RINL   1250000 perm   825 sec   (1515 perm/sec)   p_kst 4.432000e-04   p_cons 7.296904e-01   p_joint 9.400000e-04

Joint ci ratio: 1.137730e-01	ci left: 8.877077e-04	ci right 9.955599e-04	k: 1185	n:1260000
Cons ci ratio: 2.125919e-03	ci left: 7.288370e-01	ci right 7.303889e-01	k: 919313	n:1260000
KS ci ratio: 1.659100e-01	ci left: 4.061163e-04	ci right 4.803385e-04	k: 557	n:1260000
RINL   1260000 perm   836 sec   (1506 perm/sec)   p_kst 4.420635e-04   p_cons 7.296135e-01   p_joint 9.404762e-04

Joint ci ratio: 1.134864e-01	ci left: 8.853080e-04	ci right 9.925795e-04	k: 1191	n:1270000
Cons ci ratio: 2.117369e-03	ci left: 7.288707e-01	ci right 7.304164e-01	k: 926648	n:1270000
KS ci ratio: 1.657618e-01	ci left: 4.036732e-04	ci right 4.773764e-04	k: 558	n:1270000
RINL   1270000 perm   848 sec   (1498 perm/sec)   p_kst 4.393701e-04   p_cons 7.296441e-01   p_joint 9.377953e-04

Joint ci ratio: 1.130604e-01	ci left: 8.852235e-04	ci right 9.920554e-04	k: 1200	n:1280000
Cons ci ratio: 2.108733e-03	ci left: 7.289391e-01	ci right 7.304786e-01	k: 934028	n:1280000
KS ci ratio: 1.648792e-01	ci left: 4.050131e-04	ci right 4.785281e-04	k: 564	n:1280000
RINL   1280000 perm   860 sec   (1489 perm/sec)   p_kst 4.406250e-04   p_cons 7.297094e-01   p_joint 9.375000e-04

Joint ci ratio: 1.125926e-01	ci left: 8.858945e-04	ci right 9.923356e-04	k: 1210	n:1290000
Cons ci ratio: 2.100180e-03	ci left: 7.290103e-01	ci right 7.305437e-01	k: 941413	n:1290000
KS ci ratio: 1.641544e-01	ci left: 4.055898e-04	ci right 4.788540e-04	k: 569	n:1290000
RINL   1290000 perm   871 sec   (1480 perm/sec)   p_kst 4.410853e-04   p_cons 7.297775e-01   p_joint 9.379845e-04

Joint ci ratio: 1.122226e-01	ci left: 8.850607e-04	ci right 9.910291e-04	k: 1218	n:1300000
Cons ci ratio: 2.091801e-03	ci left: 7.290673e-01	ci right 7.305947e-01	k: 948781	n:1300000
KS ci ratio: 1.638673e-01	ci left: 4.039452e-04	ci right 4.767721e-04	k: 571	n:1300000
RINL   1300000 perm   883 sec   (1472 perm/sec)   p_kst 4.392308e-04   p_cons 7.298315e-01   p_joint 9.369231e-04

Joint ci ratio: 1.118106e-01	ci left: 8.849823e-04	ci right 9.905266e-04	k: 1227	n:1310000
Cons ci ratio: 2.083609e-03	ci left: 7.291067e-01	ci right 7.306282e-01	k: 956127	n:1310000
KS ci ratio: 1.630145e-01	ci left: 4.052545e-04	ci right 4.778999e-04	k: 577	n:1310000
RINL   1310000 perm   895 sec   (1464 perm/sec)   p_kst 4.404580e-04   p_cons 7.298679e-01   p_joint 9.366412e-04

Joint ci ratio: 1.112233e-01	ci left: 8.878517e-04	ci right 9.931456e-04	k: 1240	n:1320000
Cons ci ratio: 2.075916e-03	ci left: 7.290689e-01	ci right 7.305847e-01	k: 963372	n:1320000
KS ci ratio: 1.620361e-01	ci left: 4.072718e-04	ci right 4.797980e-04	k: 584	n:1320000
RINL   1320000 perm   906 sec   (1456 perm/sec)   p_kst 4.424242e-04   p_cons 7.298273e-01   p_joint 9.393939e-04

Joint ci ratio: 1.108222e-01	ci left: 8.877552e-04	ci right 9.926331e-04	k: 1249	n:1330000
Cons ci ratio: 2.067987e-03	ci left: 7.290926e-01	ci right 7.306026e-01	k: 970698	n:1330000
KS ci ratio: 1.617599e-01	ci left: 4.056524e-04	ci right 4.777551e-04	k: 586	n:1330000
RINL   1330000 perm   918 sec   (1448 perm/sec)   p_kst 4.406015e-04   p_cons 7.298481e-01   p_joint 9.390977e-04

Joint ci ratio: 1.104693e-01	ci left: 8.869350e-04	ci right 9.913607e-04	k: 1257	n:1340000
Cons ci ratio: 2.060141e-03	ci left: 7.291175e-01	ci right 7.306218e-01	k: 978026	n:1340000
KS ci ratio: 1.613483e-01	ci left: 4.047734e-04	ci right 4.765190e-04	k: 589	n:1340000
RINL   1340000 perm   930 sec   (1440 perm/sec)   p_kst 4.395522e-04   p_cons 7.298701e-01   p_joint 9.380597e-04

Joint ci ratio: 1.099461e-01	ci left: 8.890091e-04	ci right 9.931511e-04	k: 1269	n:1350000
Cons ci ratio: 2.052596e-03	ci left: 7.291012e-01	ci right 7.306000e-01	k: 985299	n:1350000
KS ci ratio: 1.603994e-01	ci left: 4.067516e-04	ci right 4.783830e-04	k: 596	n:1350000
RINL   1350000 perm   943 sec   (1432 perm/sec)   p_kst 4.414815e-04   p_cons 7.298511e-01   p_joint 9.400000e-04

Joint ci ratio: 1.094302e-01	ci left: 8.910538e-04	ci right 9.949140e-04	k: 1281	n:1360000
Cons ci ratio: 2.044912e-03	ci left: 7.291279e-01	ci right 7.306211e-01	k: 992630	n:1360000
KS ci ratio: 1.597318e-01	ci left: 4.072899e-04	ci right 4.786891e-04	k: 601	n:1360000
RINL   1360000 perm   955 sec   (1425 perm/sec)   p_kst 4.419118e-04   p_cons 7.298750e-01   p_joint 9.419118e-04

Joint ci ratio: 1.090058e-01	ci left: 8.916496e-04	ci right 9.951504e-04	k: 1291	n:1370000
Cons ci ratio: 2.037770e-03	ci left: 7.290658e-01	ci right 7.305537e-01	k: 999840	n:1370000
KS ci ratio: 1.590726e-01	ci left: 4.078211e-04	ci right 4.789901e-04	k: 606	n:1370000
RINL   1370000 perm   967 sec   (1416 perm/sec)   p_kst 4.423358e-04   p_cons 7.298102e-01   p_joint 9.423358e-04

Joint ci ratio: 1.085030e-01	ci left: 8.936475e-04	ci right 9.968712e-04	k: 1303	n:1380000
Cons ci ratio: 2.030128e-03	ci left: 7.291163e-01	ci right 7.305987e-01	k: 1007204	n:1380000
KS ci ratio: 1.585511e-01	ci left: 4.076492e-04	ci right 4.785328e-04	k: 610	n:1380000
RINL   1380000 perm   979 sec   (1409 perm/sec)   p_kst 4.420290e-04   p_cons 7.298580e-01   p_joint 9.442029e-04

Joint ci ratio: 1.081718e-01	ci left: 8.928178e-04	ci right 9.956108e-04	k: 1311	n:1390000
Cons ci ratio: 2.022843e-03	ci left: 7.291128e-01	ci right 7.305899e-01	k: 1014494	n:1390000
KS ci ratio: 1.579062e-01	ci left: 4.081712e-04	ci right 4.788295e-04	k: 615	n:1390000
RINL   1390000 perm   992 sec   (1401 perm/sec)   p_kst 4.424460e-04   p_cons 7.298518e-01   p_joint 9.431655e-04

Joint ci ratio: 1.077211e-01	ci left: 8.940856e-04	ci right 9.965684e-04	k: 1322	n:1400000
Cons ci ratio: 2.015623e-03	ci left: 7.291122e-01	ci right 7.305840e-01	k: 1021788	n:1400000
KS ci ratio: 1.572692e-01	ci left: 4.086863e-04	ci right 4.791214e-04	k: 620	n:1400000
RINL   1400000 perm   1004 sec   (1394 perm/sec)   p_kst 4.428571e-04   p_cons 7.298486e-01   p_joint 9.442857e-04

Joint ci ratio: 1.073969e-01	ci left: 8.932657e-04	ci right 9.953269e-04	k: 1330	n:1410000
Cons ci ratio: 2.008294e-03	ci left: 7.291478e-01	ci right 7.306143e-01	k: 1029133	n:1410000
KS ci ratio: 1.566399e-01	ci left: 4.091946e-04	ci right 4.794087e-04	k: 625	n:1410000
RINL   1410000 perm   1017 sec   (1387 perm/sec)   p_kst 4.432624e-04   p_cons 7.298816e-01   p_joint 9.432624e-04

Joint ci ratio: 1.069159e-01	ci left: 8.951994e-04	ci right 9.969946e-04	k: 1342	n:1420000
Cons ci ratio: 2.000874e-03	ci left: 7.292168e-01	ci right 7.306780e-01	k: 1036526	n:1420000
KS ci ratio: 1.560180e-01	ci left: 4.096964e-04	ci right 4.796913e-04	k: 630	n:1420000
RINL   1420000 perm   1030 sec   (1379 perm/sec)   p_kst 4.436620e-04   p_cons 7.299479e-01   p_joint 9.450704e-04

Joint ci ratio: 1.065201e-01	ci left: 8.957456e-04	ci right 9.972022e-04	k: 1352	n:1430000
Cons ci ratio: 1.993878e-03	ci left: 7.292169e-01	ci right 7.306730e-01	k: 1043822	n:1430000
KS ci ratio: 1.557715e-01	ci left: 4.081754e-04	ci right 4.777900e-04	k: 632	n:1430000
RINL   1430000 perm   1042 sec   (1372 perm/sec)   p_kst 4.419580e-04   p_cons 7.299455e-01   p_joint 9.454545e-04

Joint ci ratio: 1.061676e-01	ci left: 8.956089e-04	ci right 9.966934e-04	k: 1361	n:1440000
Cons ci ratio: 1.987143e-03	ci left: 7.291795e-01	ci right 7.306306e-01	k: 1051064	n:1440000
KS ci ratio: 1.552816e-01	ci left: 4.080105e-04	ci right 4.773578e-04	k: 636	n:1440000
RINL   1440000 perm   1055 sec   (1364 perm/sec)   p_kst 4.416667e-04   p_cons 7.299056e-01   p_joint 9.451389e-04

Joint ci ratio: 1.055492e-01	ci left: 9.001747e-04	ci right 1.001146e-03	k: 1377	n:1450000
Cons ci ratio: 1.980366e-03	ci left: 7.291648e-01	ci right 7.306109e-01	k: 1058338	n:1450000
KS ci ratio: 1.543155e-01	ci left: 4.105002e-04	ci right 4.797964e-04	k: 644	n:1450000
RINL   1450000 perm   1068 sec   (1357 perm/sec)   p_kst 4.441379e-04   p_cons 7.298883e-01   p_joint 9.496552e-04

Joint ci ratio: 1.054347e-01	ci left: 8.960096e-04	ci right 9.963980e-04	k: 1380	n:1460000
Cons ci ratio: 1.973702e-03	ci left: 7.291413e-01	ci right 7.305825e-01	k: 1065599	n:1460000
KS ci ratio: 1.543157e-01	ci left: 4.076885e-04	ci right 4.765102e-04	k: 644	n:1460000
RINL   1460000 perm   1081 sec   (1350 perm/sec)   p_kst 4.410959e-04   p_cons 7.298623e-01   p_joint 9.452055e-04

Joint ci ratio: 1.049418e-01	ci left: 8.985253e-04	ci right 9.986958e-04	k: 1393	n:1470000
Cons ci ratio: 1.967126e-03	ci left: 7.291140e-01	ci right 7.305504e-01	k: 1072854	n:1470000
KS ci ratio: 1.534849e-01	ci left: 4.094937e-04	ci right 4.782137e-04	k: 651	n:1470000
RINL   1470000 perm   1094 sec   (1343 perm/sec)   p_kst 4.428571e-04   p_cons 7.298327e-01   p_joint 9.476190e-04

Joint ci ratio: 1.046420e-01	ci left: 8.977179e-04	ci right 9.974949e-04	k: 1401	n:1480000
Cons ci ratio: 1.960376e-03	ci left: 7.291352e-01	ci right 7.305666e-01	k: 1080180	n:1480000
KS ci ratio: 1.528998e-01	ci left: 4.099757e-04	ci right 4.784903e-04	k: 656	n:1480000
RINL   1480000 perm   1108 sec   (1336 perm/sec)   p_kst 4.432432e-04   p_cons 7.298514e-01   p_joint 9.466216e-04

Joint ci ratio: 1.043078e-01	ci left: 8.975753e-04	ci right 9.969983e-04	k: 1410	n:1490000
Cons ci ratio: 1.953778e-03	ci left: 7.291393e-01	ci right 7.305659e-01	k: 1087481	n:1490000
KS ci ratio: 1.525519e-01	ci left: 4.091607e-04	ci right 4.773693e-04	k: 659	n:1490000
RINL   1490000 perm   1121 sec   (1330 perm/sec)   p_kst 4.422819e-04   p_cons 7.298530e-01   p_joint 9.463087e-04

Joint ci ratio: 1.037211e-01	ci left: 9.019808e-04	ci right 1.001296e-03	k: 1426	n:1500000
Cons ci ratio: 1.947253e-03	ci left: 7.291420e-01	ci right 7.305638e-01	k: 1094780	n:1500000
KS ci ratio: 1.519773e-01	ci left: 4.096393e-04	ci right 4.776471e-04	k: 664	n:1500000
RINL   1500000 perm   1134 sec   (1323 perm/sec)   p_kst 4.426667e-04   p_cons 7.298533e-01   p_joint 9.506667e-04

Joint ci ratio: 1.033956e-01	ci left: 9.018133e-04	ci right 1.000779e-03	k: 1435	n:1510000
Cons ci ratio: 1.940770e-03	ci left: 7.291493e-01	ci right 7.305664e-01	k: 1102086	n:1510000
KS ci ratio: 1.517494e-01	ci left: 4.082006e-04	ci right 4.758587e-04	k: 666	n:1510000
RINL   1510000 perm   1147 sec   (1316 perm/sec)   p_kst 4.410596e-04   p_cons 7.298583e-01   p_joint 9.503311e-04

Joint ci ratio: 1.031446e-01	ci left: 9.003666e-04	ci right 9.989192e-04	k: 1442	n:1520000
Cons ci ratio: 1.934293e-03	ci left: 7.291684e-01	ci right 7.305808e-01	k: 1109410	n:1520000
KS ci ratio: 1.514094e-01	ci left: 4.074139e-04	ci right 4.747765e-04	k: 669	n:1520000
RINL   1520000 perm   1160 sec   (1310 perm/sec)   p_kst 4.401316e-04   p_cons 7.298750e-01   p_joint 9.486842e-04

Joint ci ratio: 1.026830e-01	ci left: 9.027599e-04	ci right 1.001106e-03	k: 1455	n:1530000
Cons ci ratio: 1.927913e-03	ci left: 7.291806e-01	ci right 7.305884e-01	k: 1116724	n:1530000
KS ci ratio: 1.505133e-01	ci left: 4.097823e-04	ci right 4.770995e-04	k: 677	n:1530000
RINL   1530000 perm   1174 sec   (1304 perm/sec)   p_kst 4.424837e-04   p_cons 7.298850e-01   p_joint 9.509804e-04

Joint ci ratio: 1.021579e-01	ci left: 9.063887e-04	ci right 1.004595e-03	k: 1470	n:1540000
Cons ci ratio: 1.921624e-03	ci left: 7.291869e-01	ci right 7.305901e-01	k: 1124029	n:1540000
KS ci ratio: 1.497421e-01	ci left: 4.114961e-04	ci right 4.787175e-04	k: 684	n:1540000
RINL   1540000 perm   1187 sec   (1297 perm/sec)   p_kst 4.441558e-04   p_cons 7.298890e-01   p_joint 9.545455e-04

Joint ci ratio: 1.018469e-01	ci left: 9.061994e-04	ci right 1.004068e-03	k: 1479	n:1550000
Cons ci ratio: 1.915302e-03	ci left: 7.292125e-01	ci right 7.306111e-01	k: 1131364	n:1550000
KS ci ratio: 1.493069e-01	ci left: 4.113254e-04	ci right 4.783061e-04	k: 688	n:1550000
RINL   1550000 perm   1201 sec   (1291 perm/sec)   p_kst 4.438710e-04   p_cons 7.299123e-01   p_joint 9.541935e-04

Joint ci ratio: 1.015045e-01	ci left: 9.066377e-04	ci right 1.004205e-03	k: 1489	n:1560000
Cons ci ratio: 1.909216e-03	ci left: 7.292019e-01	ci right 7.305960e-01	k: 1138643	n:1560000
KS ci ratio: 1.484474e-01	ci left: 4.136259e-04	ci right 4.805591e-04	k: 696	n:1560000
RINL   1560000 perm   1215 sec   (1284 perm/sec)   p_kst 4.461538e-04   p_cons 7.298994e-01   p_joint 9.544872e-04

Joint ci ratio: 1.009637e-01	ci left: 9.107960e-04	ci right 1.008257e-03	k: 1505	n:1570000
Cons ci ratio: 1.903055e-03	ci left: 7.292188e-01	ci right 7.306084e-01	k: 1145965	n:1570000
KS ci ratio: 1.477074e-01	ci left: 4.152848e-04	ci right 4.821218e-04	k: 703	n:1570000
RINL   1570000 perm   1228 sec   (1278 perm/sec)   p_kst 4.477707e-04   p_cons 7.299140e-01   p_joint 9.585987e-04

Joint ci ratio: 1.004975e-01	ci left: 9.136691e-04	ci right 1.010960e-03	k: 1519	n:1580000
Cons ci ratio: 1.896911e-03	ci left: 7.292443e-01	ci right 7.306295e-01	k: 1153301	n:1580000
KS ci ratio: 1.468751e-01	ci left: 4.175332e-04	ci right 4.843202e-04	k: 711	n:1580000
RINL   1580000 perm   1242 sec   (1272 perm/sec)   p_kst 4.500000e-04   p_cons 7.299373e-01   p_joint 9.613924e-04

Joint ci ratio: 1.001030e-01	ci left: 9.152807e-04	ci right 1.012338e-03	k: 1531	n:1590000
Cons ci ratio: 1.890974e-03	ci left: 7.292387e-01	ci right 7.306196e-01	k: 1160588	n:1590000
KS ci ratio: 1.460566e-01	ci left: 4.197543e-04	ci right 4.864898e-04	k: 719	n:1590000
RINL   1590000 perm   1256 sec   (1266 perm/sec)   p_kst 4.522013e-04   p_cons 7.299296e-01   p_joint 9.628931e-04

Joint ci ratio: 9.981030e-02	ci left: 9.150445e-04	ci right 1.011776e-03	k: 1540	n:1600000
Cons ci ratio: 1.885199e-03	ci left: 7.292107e-01	ci right 7.305873e-01	k: 1167839	n:1600000
KS ci ratio: 1.455521e-01	ci left: 4.201418e-04	ci right 4.866881e-04	k: 724	n:1600000
RINL   1600000 perm   1270 sec   (1260 perm/sec)   p_kst 4.525000e-04   p_cons 7.298994e-01   p_joint 9.625000e-04

Joint ci ratio: 9.955228e-02	ci left: 9.142061e-04	ci right 1.010585e-03	k: 1548	n:1610000
Cons ci ratio: 1.879768e-03	ci left: 7.291220e-01	ci right 7.304945e-01	k: 1174992	n:1610000
KS ci ratio: 1.451523e-01	ci left: 4.199263e-04	ci right 4.862400e-04	k: 728	n:1610000
RINL   1610000 perm   1284 sec   (1254 perm/sec)   p_kst 4.521739e-04   p_cons 7.298087e-01   p_joint 9.614907e-04

Joint ci ratio: 9.942416e-02	ci left: 9.109705e-04	ci right 1.006877e-03	k: 1552	n:1620000
Cons ci ratio: 1.873802e-03	ci left: 7.291569e-01	ci right 7.305250e-01	k: 1182343	n:1620000
KS ci ratio: 1.450530e-01	ci left: 4.179290e-04	ci right 4.838782e-04	k: 729	n:1620000
RINL   1620000 perm   1299 sec   (1248 perm/sec)   p_kst 4.500000e-04   p_cons 7.298414e-01   p_joint 9.580247e-04

Joint ci ratio: 9.913733e-02	ci left: 9.107661e-04	ci right 1.006359e-03	k: 1561	n:1630000
Cons ci ratio: 1.867980e-03	ci left: 7.291728e-01	ci right 7.305368e-01	k: 1189664	n:1630000
KS ci ratio: 1.446572e-01	ci left: 4.177301e-04	ci right 4.834525e-04	k: 733	n:1630000
RINL   1630000 perm   1313 sec   (1242 perm/sec)   p_kst 4.496933e-04   p_cons 7.298552e-01   p_joint 9.576687e-04

Joint ci ratio: 9.882150e-02	ci left: 9.111592e-04	ci right 1.006471e-03	k: 1571	n:1640000
Cons ci ratio: 1.862525e-03	ci left: 7.291221e-01	ci right 7.304820e-01	k: 1196876	n:1640000
KS ci ratio: 1.444606e-01	ci left: 4.163584e-04	ci right 4.817683e-04	k: 735	n:1640000
RINL   1640000 perm   1327 sec   (1236 perm/sec)   p_kst 4.481707e-04   p_cons 7.298024e-01   p_joint 9.579268e-04

Joint ci ratio: 9.832220e-02	ci left: 9.150951e-04	ci right 1.010307e-03	k: 1587	n:1650000
Cons ci ratio: 1.856744e-03	ci left: 7.291514e-01	ci right 7.305071e-01	k: 1204219	n:1650000
KS ci ratio: 1.436817e-01	ci left: 4.185087e-04	ci right 4.838715e-04	k: 743	n:1650000
RINL   1650000 perm   1342 sec   (1230 perm/sec)   p_kst 4.503030e-04   p_cons 7.298297e-01   p_joint 9.618182e-04

Joint ci ratio: 9.795273e-02	ci left: 9.166340e-04	ci right 1.011627e-03	k: 1599	n:1660000
Cons ci ratio: 1.851042e-03	ci left: 7.291750e-01	ci right 7.305266e-01	k: 1211553	n:1660000
KS ci ratio: 1.429153e-01	ci left: 4.206341e-04	ci right 4.859486e-04	k: 751	n:1660000
RINL   1660000 perm   1356 sec   (1224 perm/sec)   p_kst 4.524096e-04   p_cons 7.298512e-01   p_joint 9.632530e-04

Joint ci ratio: 9.764804e-02	ci left: 9.169867e-04	ci right 1.011704e-03	k: 1609	n:1670000
Cons ci ratio: 1.845538e-03	ci left: 7.291672e-01	ci right 7.305147e-01	k: 1218835	n:1670000
KS ci ratio: 1.422546e-01	ci left: 4.221575e-04	ci right 4.873797e-04	k: 758	n:1670000
RINL   1670000 perm   1371 sec   (1218 perm/sec)   p_kst 4.538922e-04   p_cons 7.298413e-01   p_joint 9.634731e-04

Joint ci ratio: 9.731613e-02	ci left: 9.179165e-04	ci right 1.012389e-03	k: 1620	n:1680000
Cons ci ratio: 1.840241e-03	ci left: 7.291254e-01	ci right 7.304690e-01	k: 1226060	n:1680000
KS ci ratio: 1.417883e-01	ci left: 4.225151e-04	ci right 4.875605e-04	k: 763	n:1680000
RINL   1680000 perm   1385 sec   (1213 perm/sec)   p_kst 4.541667e-04   p_cons 7.297976e-01   p_joint 9.642857e-04

Joint ci ratio: 9.707692e-02	ci left: 9.171037e-04	ci right 1.011247e-03	k: 1628	n:1690000
Cons ci ratio: 1.834970e-03	ci left: 7.290884e-01	ci right 7.304280e-01	k: 1233292	n:1690000
KS ci ratio: 1.415108e-01	ci left: 4.217272e-04	ci right 4.865136e-04	k: 766	n:1690000
RINL   1690000 perm   1400 sec   (1207 perm/sec)   p_kst 4.532544e-04   p_cons 7.297586e-01   p_joint 9.633136e-04

Joint ci ratio: 9.672126e-02	ci left: 9.185967e-04	ci right 1.012528e-03	k: 1640	n:1700000
Cons ci ratio: 1.829638e-03	ci left: 7.290747e-01	ci right 7.304104e-01	k: 1240563	n:1700000
KS ci ratio: 1.410518e-01	ci left: 4.220837e-04	ci right 4.866968e-04	k: 771	n:1700000
RINL   1700000 perm   1415 sec   (1201 perm/sec)   p_kst 4.535294e-04   p_cons 7.297429e-01   p_joint 9.647059e-04

Joint ci ratio: 9.636948e-02	ci left: 9.200730e-04	ci right 1.013794e-03	k: 1652	n:1710000
Cons ci ratio: 1.824287e-03	ci left: 7.290752e-01	ci right 7.304070e-01	k: 1247858	n:1710000
KS ci ratio: 1.404165e-01	ci left: 4.235648e-04	ci right 4.880882e-04	k: 778	n:1710000
RINL   1710000 perm   1430 sec   (1196 perm/sec)   p_kst 4.549708e-04   p_cons 7.297415e-01   p_joint 9.660819e-04

Joint ci ratio: 9.607929e-02	ci left: 9.203977e-04	ci right 1.013854e-03	k: 1662	n:1720000
Cons ci ratio: 1.818937e-03	ci left: 7.290857e-01	ci right 7.304136e-01	k: 1255170	n:1720000
KS ci ratio: 1.398788e-01	ci left: 4.244683e-04	ci right 4.888611e-04	k: 784	n:1720000
RINL   1720000 perm   1445 sec   (1190 perm/sec)   p_kst 4.558140e-04   p_cons 7.297500e-01   p_joint 9.662791e-04

Joint ci ratio: 9.599293e-02	ci left: 9.167699e-04	ci right 1.009769e-03	k: 1665	n:1730000
Cons ci ratio: 1.813556e-03	ci left: 7.291127e-01	ci right 7.304368e-01	k: 1262511	n:1730000
KS ci ratio: 1.397900e-01	ci left: 4.225725e-04	ci right 4.866335e-04	k: 785	n:1730000
RINL   1730000 perm   1460 sec   (1185 perm/sec)   p_kst 4.537572e-04   p_cons 7.297751e-01   p_joint 9.624277e-04

Joint ci ratio: 9.564900e-02	ci left: 9.182324e-04	ci right 1.011028e-03	k: 1677	n:1740000
Cons ci ratio: 1.808324e-03	ci left: 7.291177e-01	ci right 7.304379e-01	k: 1269814	n:1740000
KS ci ratio: 1.392594e-01	ci left: 4.234718e-04	ci right 4.874054e-04	k: 791	n:1740000
RINL   1740000 perm   1475 sec   (1180 perm/sec)   p_kst 4.545977e-04   p_cons 7.297782e-01   p_joint 9.637931e-04

Joint ci ratio: 9.550694e-02	ci left: 9.157742e-04	ci right 1.008176e-03	k: 1682	n:1750000
Cons ci ratio: 1.803222e-03	ci left: 7.291037e-01	ci right 7.304201e-01	k: 1277084	n:1750000
KS ci ratio: 1.391717e-01	ci left: 4.216035e-04	ci right 4.852115e-04	k: 792	n:1750000
RINL   1750000 perm   1490 sec   (1175 perm/sec)   p_kst 4.525714e-04   p_cons 7.297623e-01   p_joint 9.611429e-04

Joint ci ratio: 9.525261e-02	ci left: 9.155626e-04	ci right 1.007683e-03	k: 1691	n:1760000
Cons ci ratio: 1.798210e-03	ci left: 7.290796e-01	ci right 7.303924e-01	k: 1284336	n:1760000
KS ci ratio: 1.387350e-01	ci left: 4.219502e-04	ci right 4.853943e-04	k: 797	n:1760000
RINL   1760000 perm   1505 sec   (1169 perm/sec)   p_kst 4.528409e-04   p_cons 7.297364e-01   p_joint 9.607955e-04

Joint ci ratio: 9.494445e-02	ci left: 9.164568e-04	ci right 1.008352e-03	k: 1702	n:1770000
Cons ci ratio: 1.793047e-03	ci left: 7.290982e-01	ci right 7.304072e-01	k: 1291663	n:1770000
KS ci ratio: 1.384750e-01	ci left: 4.212024e-04	ci right 4.844056e-04	k: 800	n:1770000
RINL   1770000 perm   1521 sec   (1164 perm/sec)   p_kst 4.519774e-04   p_cons 7.297531e-01   p_joint 9.615819e-04

Joint ci ratio: 9.472227e-02	ci left: 9.156959e-04	ci right 1.007289e-03	k: 1710	n:1780000
Cons ci ratio: 1.787900e-03	ci left: 7.291228e-01	ci right 7.304281e-01	k: 1299001	n:1780000
KS ci ratio: 1.381306e-01	ci left: 4.210055e-04	ci right 4.840091e-04	k: 804	n:1780000
RINL   1780000 perm   1536 sec   (1158 perm/sec)   p_kst 4.516854e-04   p_cons 7.297758e-01   p_joint 9.606742e-04

Joint ci ratio: 9.441921e-02	ci left: 9.165803e-04	ci right 1.007952e-03	k: 1721	n:1790000
Cons ci ratio: 1.782858e-03	ci left: 7.291337e-01	ci right 7.304354e-01	k: 1306315	n:1790000
KS ci ratio: 1.377887e-01	ci left: 4.208111e-04	ci right 4.836169e-04	k: 808	n:1790000
RINL   1790000 perm   1552 sec   (1153 perm/sec)   p_kst 4.513966e-04   p_cons 7.297849e-01   p_joint 9.614525e-04

Joint ci ratio: 9.403760e-02	ci left: 9.190827e-04	ci right 1.010313e-03	k: 1735	n:1800000
Cons ci ratio: 1.777869e-03	ci left: 7.291423e-01	ci right 7.304403e-01	k: 1313625	n:1800000
KS ci ratio: 1.371963e-01	ci left: 4.222284e-04	ci right 4.849527e-04	k: 815	n:1800000
RINL   1800000 perm   1568 sec   (1148 perm/sec)   p_kst 4.527778e-04   p_cons 7.297917e-01   p_joint 9.638889e-04

Joint ci ratio: 9.379480e-02	ci left: 9.188605e-04	ci right 1.009820e-03	k: 1744	n:1810000
Cons ci ratio: 1.772928e-03	ci left: 7.291491e-01	ci right 7.304435e-01	k: 1320932	n:1810000
KS ci ratio: 1.367779e-01	ci left: 4.225634e-04	ci right 4.851304e-04	k: 820	n:1810000
RINL   1810000 perm   1583 sec   (1143 perm/sec)   p_kst 4.530387e-04   p_cons 7.297967e-01   p_joint 9.635359e-04

Joint ci ratio: 9.352719e-02	ci left: 9.191776e-04	ci right 1.009895e-03	k: 1754	n:1820000
Cons ci ratio: 1.767836e-03	ci left: 7.291988e-01	ci right 7.304895e-01	k: 1328317	n:1820000
KS ci ratio: 1.361162e-01	ci left: 4.244872e-04	ci right 4.870104e-04	k: 828	n:1820000
RINL   1820000 perm   1599 sec   (1138 perm/sec)   p_kst 4.549451e-04   p_cons 7.298445e-01   p_joint 9.637363e-04

Joint ci ratio: 9.323542e-02	ci left: 9.200253e-04	ci right 1.010528e-03	k: 1765	n:1830000
Cons ci ratio: 1.763005e-03	ci left: 7.291992e-01	ci right 7.304864e-01	k: 1335613	n:1830000
KS ci ratio: 1.357075e-01	ci left: 4.248069e-04	ci right 4.871742e-04	k: 833	n:1830000
RINL   1830000 perm   1615 sec   (1133 perm/sec)   p_kst 4.551913e-04   p_cons 7.298432e-01   p_joint 9.644809e-04

Joint ci ratio: 9.284183e-02	ci left: 9.229878e-04	ci right 1.013377e-03	k: 1780	n:1840000
Cons ci ratio: 1.758328e-03	ci left: 7.291741e-01	ci right 7.304578e-01	k: 1342862	n:1840000
KS ci ratio: 1.352219e-01	ci left: 4.256486e-04	ci right 4.878978e-04	k: 839	n:1840000
RINL   1840000 perm   1632 sec   (1128 perm/sec)   p_kst 4.559783e-04   p_cons 7.298163e-01   p_joint 9.673913e-04

Joint ci ratio: 9.255641e-02	ci left: 9.238068e-04	ci right 1.013983e-03	k: 1791	n:1850000
Cons ci ratio: 1.753548e-03	ci left: 7.291806e-01	ci right 7.304609e-01	k: 1350169	n:1850000
KS ci ratio: 1.348213e-01	ci left: 4.259592e-04	ci right 4.880545e-04	k: 844	n:1850000
RINL   1850000 perm   1648 sec   (1122 perm/sec)   p_kst 4.562162e-04   p_cons 7.298211e-01   p_joint 9.681081e-04

Joint ci ratio: 9.237623e-02	ci left: 9.225164e-04	ci right 1.012382e-03	k: 1798	n:1860000
Cons ci ratio: 1.748804e-03	ci left: 7.291876e-01	ci right 7.304644e-01	k: 1357477	n:1860000
KS ci ratio: 1.345826e-01	ci left: 4.252276e-04	ci right 4.870977e-04	k: 847	n:1860000
RINL   1860000 perm   1664 sec   (1118 perm/sec)   p_kst 4.553763e-04   p_cons 7.298263e-01   p_joint 9.666667e-04

Joint ci ratio: 9.219710e-02	ci left: 9.212401e-04	ci right 1.010798e-03	k: 1805	n:1870000
Cons ci ratio: 1.744033e-03	ci left: 7.292095e-01	ci right 7.304829e-01	k: 1364813	n:1870000
KS ci ratio: 1.342664e-01	ci left: 4.250208e-04	ci right 4.867039e-04	k: 851	n:1870000
RINL   1870000 perm   1680 sec   (1113 perm/sec)   p_kst 4.550802e-04   p_cons 7.298465e-01   p_joint 9.652406e-04

Joint ci ratio: 9.196824e-02	ci left: 9.210169e-04	ci right 1.010319e-03	k: 1814	n:1880000
Cons ci ratio: 1.739131e-03	ci left: 7.292695e-01	ci right 7.305394e-01	k: 1372221	n:1880000
KS ci ratio: 1.341091e-01	ci left: 4.237881e-04	ci right 4.852146e-04	k: 853	n:1880000
RINL   1880000 perm   1696 sec   (1108 perm/sec)   p_kst 4.537234e-04   p_cons 7.299048e-01   p_joint 9.648936e-04

Joint ci ratio: 9.169078e-02	ci left: 9.218302e-04	ci right 1.010927e-03	k: 1825	n:1890000
Cons ci ratio: 1.734541e-03	ci left: 7.292674e-01	ci right 7.305340e-01	k: 1379513	n:1890000
KS ci ratio: 1.337182e-01	ci left: 4.241027e-04	ci right 4.853814e-04	k: 858	n:1890000
RINL   1890000 perm   1713 sec   (1104 perm/sec)   p_kst 4.539683e-04   p_cons 7.299011e-01   p_joint 9.656085e-04

Joint ci ratio: 9.151560e-02	ci left: 9.205783e-04	ci right 1.009375e-03	k: 1832	n:1900000
Cons ci ratio: 1.729892e-03	ci left: 7.292870e-01	ci right 7.305502e-01	k: 1386846	n:1900000
KS ci ratio: 1.334080e-01	ci left: 4.239055e-04	ci right 4.850023e-04	k: 862	n:1900000
RINL   1900000 perm   1729 sec   (1099 perm/sec)   p_kst 4.536842e-04   p_cons 7.299189e-01   p_joint 9.642105e-04

Joint ci ratio: 9.131658e-02	ci left: 9.198512e-04	ci right 1.008375e-03	k: 1840	n:1910000
Cons ci ratio: 1.725278e-03	ci left: 7.293069e-01	ci right 7.305667e-01	k: 1394180	n:1910000
KS ci ratio: 1.331768e-01	ci left: 4.232044e-04	ci right 4.840861e-04	k: 865	n:1910000
RINL   1910000 perm   1746 sec   (1094 perm/sec)   p_kst 4.528796e-04   p_cons 7.299372e-01   p_joint 9.633508e-04

Joint ci ratio: 9.116823e-02	ci left: 9.181140e-04	ci right 1.006319e-03	k: 1846	n:1920000
Cons ci ratio: 1.720850e-03	ci left: 7.292922e-01	ci right 7.305488e-01	k: 1401448	n:1920000
KS ci ratio: 1.328703e-01	ci left: 4.230142e-04	ci right 4.837174e-04	k: 869	n:1920000
RINL   1920000 perm   1762 sec   (1089 perm/sec)   p_kst 4.526042e-04   p_cons 7.299208e-01   p_joint 9.614583e-04

Joint ci ratio: 9.094693e-02	ci left: 9.179139e-04	ci right 1.005874e-03	k: 1855	n:1930000
Cons ci ratio: 1.716303e-03	ci left: 7.293129e-01	ci right 7.305662e-01	k: 1408784	n:1930000
KS ci ratio: 1.325659e-01	ci left: 4.228262e-04	ci right 4.833524e-04	k: 873	n:1930000
RINL   1930000 perm   1779 sec   (1085 perm/sec)   p_kst 4.523316e-04   p_cons 7.299399e-01   p_joint 9.611399e-04

Joint ci ratio: 9.084922e-02	ci left: 9.151973e-04	ci right 1.002798e-03	k: 1859	n:1940000
Cons ci ratio: 1.711839e-03	ci left: 7.293226e-01	ci right 7.305726e-01	k: 1416099	n:1940000
KS ci ratio: 1.322636e-01	ci left: 4.226402e-04	ci right 4.829910e-04	k: 877	n:1940000
RINL   1940000 perm   1796 sec   (1080 perm/sec)   p_kst 4.520619e-04   p_cons 7.299479e-01   p_joint 9.582474e-04

Joint ci ratio: 9.072746e-02	ci left: 9.130099e-04	ci right 1.000278e-03	k: 1864	n:1950000
Cons ci ratio: 1.707550e-03	ci left: 7.292998e-01	ci right 7.305467e-01	k: 1423351	n:1950000
KS ci ratio: 1.321885e-01	ci left: 4.209687e-04	ci right 4.810440e-04	k: 878	n:1950000
RINL   1950000 perm   1813 sec   (1076 perm/sec)   p_kst 4.502564e-04   p_cons 7.299236e-01   p_joint 9.558974e-04

Joint ci ratio: 9.041282e-02	ci left: 9.148341e-04	ci right 1.001957e-03	k: 1877	n:1960000
Cons ci ratio: 1.703085e-03	ci left: 7.293253e-01	ci right 7.305689e-01	k: 1430697	n:1960000
KS ci ratio: 1.318141e-01	ci left: 4.212876e-04	ci right 4.812249e-04	k: 883	n:1960000
RINL   1960000 perm   1830 sec   (1071 perm/sec)   p_kst 4.505102e-04   p_cons 7.299474e-01   p_joint 9.576531e-04

Joint ci ratio: 9.024484e-02	ci left: 9.136633e-04	ci right 1.000505e-03	k: 1884	n:1970000
Cons ci ratio: 1.698727e-03	ci left: 7.293337e-01	ci right 7.305742e-01	k: 1438010	n:1970000
KS ci ratio: 1.316653e-01	ci left: 4.201309e-04	ci right 4.798308e-04	k: 885	n:1970000
RINL   1970000 perm   1847 sec   (1067 perm/sec)   p_kst 4.492386e-04   p_cons 7.299543e-01   p_joint 9.563452e-04

Joint ci ratio: 9.012550e-02	ci left: 9.115171e-04	ci right 9.980340e-04	k: 1889	n:1980000
Cons ci ratio: 1.694320e-03	ci left: 7.293613e-01	ci right 7.305986e-01	k: 1445361	n:1980000
KS ci ratio: 1.315171e-01	ci left: 4.189858e-04	ci right 4.784507e-04	k: 887	n:1980000
RINL   1980000 perm   1864 sec   (1062 perm/sec)   p_kst 4.479798e-04   p_cons 7.299803e-01   p_joint 9.540404e-04

Joint ci ratio: 8.991169e-02	ci left: 9.113574e-04	ci right 9.976432e-04	k: 1898	n:1990000
Cons ci ratio: 1.690090e-03	ci left: 7.293554e-01	ci right 7.305896e-01	k: 1452646	n:1990000
KS ci ratio: 1.311483e-01	ci left: 4.193104e-04	ci right 4.786415e-04	k: 892	n:1990000
RINL   1990000 perm   1881 sec   (1058 perm/sec)   p_kst 4.482412e-04   p_cons 7.299729e-01   p_joint 9.537688e-04

Joint ci ratio: 8.965238e-02	ci left: 9.121771e-04	ci right 9.982784e-04	k: 1909	n:2000000
Cons ci ratio: 1.685754e-03	ci left: 7.293816e-01	ci right 7.306127e-01	k: 1459995	n:2000000
KS ci ratio: 1.308556e-01	ci left: 4.191483e-04	ci right 4.783138e-04	k: 896	n:2000000
RINL   2000000 perm   1899 sec   (1053 perm/sec)   p_kst 4.480000e-04   p_cons 7.299975e-01   p_joint 9.545000e-04

Joint ci ratio: 8.953536e-02	ci left: 9.100707e-04	ci right 9.958552e-04	k: 1914	n:2010000
Cons ci ratio: 1.681721e-03	ci left: 7.293443e-01	ci right 7.305724e-01	k: 1467217	n:2010000
KS ci ratio: 1.307100e-01	ci left: 4.180254e-04	ci right 4.769617e-04	k: 898	n:2010000
RINL   2010000 perm   1916 sec   (1049 perm/sec)   p_kst 4.467662e-04   p_cons 7.299587e-01   p_joint 9.522388e-04

Joint ci ratio: 8.927928e-02	ci left: 9.108892e-04	ci right 9.964925e-04	k: 1925	n:2020000
Cons ci ratio: 1.677495e-03	ci left: 7.293594e-01	ci right 7.305844e-01	k: 1474544	n:2020000
KS ci ratio: 1.303481e-01	ci left: 4.183504e-04	ci right 4.771566e-04	k: 903	n:2020000
RINL   2020000 perm   1933 sec   (1045 perm/sec)   p_kst 4.470297e-04   p_cons 7.299723e-01   p_joint 9.529703e-04

Joint ci ratio: 8.904839e-02	ci left: 9.112184e-04	ci right 9.966195e-04	k: 1935	n:2030000
Cons ci ratio: 1.673368e-03	ci left: 7.293586e-01	ci right 7.305806e-01	k: 1481839	n:2030000
KS ci ratio: 1.302042e-01	ci left: 4.172427e-04	ci right 4.758234e-04	k: 905	n:2030000
RINL   2030000 perm   1950 sec   (1041 perm/sec)   p_kst 4.458128e-04   p_cons 7.299700e-01   p_joint 9.532020e-04

Joint ci ratio: 8.877364e-02	ci left: 9.125032e-04	ci right 9.977472e-04	k: 1947	n:2040000
Cons ci ratio: 1.669274e-03	ci left: 7.293573e-01	ci right 7.305763e-01	k: 1489133	n:2040000
KS ci ratio: 1.299177e-01	ci left: 4.170944e-04	ci right 4.755155e-04	k: 909	n:2040000
RINL   2040000 perm   1968 sec   (1037 perm/sec)   p_kst 4.455882e-04   p_cons 7.299672e-01   p_joint 9.544118e-04

Joint ci ratio: 8.863732e-02	ci left: 9.109138e-04	ci right 9.958720e-04	k: 1953	n:2050000
Cons ci ratio: 1.665141e-03	ci left: 7.293722e-01	ci right 7.305882e-01	k: 1496460	n:2050000
KS ci ratio: 1.298465e-01	ci left: 4.155317e-04	ci right 4.736995e-04	k: 910	n:2050000
RINL   2050000 perm   1986 sec   (1032 perm/sec)   p_kst 4.439024e-04   p_cons 7.299805e-01   p_joint 9.526829e-04

Joint ci ratio: 8.850162e-02	ci left: 9.093400e-04	ci right 9.940148e-04	k: 1959	n:2060000
Cons ci ratio: 1.661082e-03	ci left: 7.293767e-01	ci right 7.305897e-01	k: 1503766	n:2060000
KS ci ratio: 1.294916e-01	ci left: 4.158630e-04	ci right 4.739059e-04	k: 915	n:2060000
RINL   2060000 perm   2003 sec   (1029 perm/sec)   p_kst 4.441748e-04   p_cons 7.299835e-01   p_joint 9.509709e-04

Joint ci ratio: 8.834406e-02	ci left: 9.082539e-04	ci right 9.926692e-04	k: 1966	n:2070000
Cons ci ratio: 1.657034e-03	ci left: 7.293855e-01	ci right 7.305955e-01	k: 1511081	n:2070000
KS ci ratio: 1.292801e-01	ci left: 4.152564e-04	ci right 4.731127e-04	k: 918	n:2070000
RINL   2070000 perm   2020 sec   (1025 perm/sec)   p_kst 4.434783e-04   p_cons 7.299908e-01   p_joint 9.497585e-04

Joint ci ratio: 8.820970e-02	ci left: 9.067082e-04	ci right 9.908451e-04	k: 1972	n:2080000
Cons ci ratio: 1.653191e-03	ci left: 7.293523e-01	ci right 7.305595e-01	k: 1518309	n:2080000
KS ci ratio: 1.291398e-01	ci left: 4.141904e-04	ci right 4.718307e-04	k: 920	n:2080000
RINL   2080000 perm   2038 sec   (1021 perm/sec)   p_kst 4.423077e-04   p_cons 7.299562e-01   p_joint 9.480769e-04

Joint ci ratio: 8.792045e-02	ci left: 9.084530e-04	ci right 9.924612e-04	k: 1985	n:2090000
Cons ci ratio: 1.649176e-03	ci left: 7.293669e-01	ci right 7.305712e-01	k: 1525636	n:2090000
KS ci ratio: 1.286517e-01	ci left: 4.154499e-04	ci right 4.730303e-04	k: 927	n:2090000
RINL   2090000 perm   2056 sec   (1017 perm/sec)   p_kst 4.435407e-04   p_cons 7.299694e-01   p_joint 9.497608e-04

Joint ci ratio: 8.756828e-02	ci left: 9.115790e-04	ci right 9.955213e-04	k: 2001	n:2100000
Cons ci ratio: 1.645359e-03	ci left: 7.293409e-01	ci right 7.305423e-01	k: 1532878	n:2100000
KS ci ratio: 1.281691e-01	ci left: 4.166979e-04	ci right 4.742181e-04	k: 934	n:2100000
RINL   2100000 perm   2073 sec   (1013 perm/sec)   p_kst 4.447619e-04   p_cons 7.299419e-01   p_joint 9.528571e-04

Joint ci ratio: 8.732866e-02	ci left: 9.123580e-04	ci right 9.961304e-04	k: 2012	n:2110000
Cons ci ratio: 1.641411e-03	ci left: 7.293530e-01	ci right 7.305516e-01	k: 1540200	n:2110000
KS ci ratio: 1.279641e-01	ci left: 4.160992e-04	ci right 4.734380e-04	k: 937	n:2110000
RINL   2110000 perm   2091 sec   (1009 perm/sec)   p_kst 4.440758e-04   p_cons 7.299526e-01   p_joint 9.535545e-04

Joint ci ratio: 8.717727e-02	ci left: 9.112842e-04	ci right 9.948056e-04	k: 2019	n:2120000
Cons ci ratio: 1.637470e-03	ci left: 7.293702e-01	ci right 7.305660e-01	k: 1547533	n:2120000
KS ci ratio: 1.277600e-01	ci left: 4.155063e-04	ci right 4.726652e-04	k: 940	n:2120000
RINL   2120000 perm   2109 sec   (1005 perm/sec)   p_kst 4.433962e-04   p_cons 7.299684e-01   p_joint 9.523585e-04

Joint ci ratio: 8.700519e-02	ci left: 9.106800e-04	ci right 9.939728e-04	k: 2027	n:2130000
Cons ci ratio: 1.633670e-03	ci left: 7.293600e-01	ci right 7.305530e-01	k: 1554808	n:2130000
KS ci ratio: 1.274219e-01	ci left: 4.158281e-04	ci right 4.728684e-04	k: 945	n:2130000
RINL   2130000 perm   2127 sec   (1001 perm/sec)   p_kst 4.436620e-04   p_cons 7.299568e-01   p_joint 9.516432e-04

Joint ci ratio: 8.681278e-02	ci left: 9.105386e-04	ci right 9.936251e-04	k: 2036	n:2140000
Cons ci ratio: 1.630041e-03	ci left: 7.293149e-01	ci right 7.305051e-01	k: 1562008	n:2140000
KS ci ratio: 1.272874e-01	ci left: 4.147898e-04	ci right 4.716231e-04	k: 947	n:2140000
RINL   2140000 perm   2146 sec   (997 perm/sec)   p_kst 4.425234e-04   p_cons 7.299103e-01   p_joint 9.514019e-04

Joint ci ratio: 8.666405e-02	ci left: 9.094888e-04	ci right 9.923300e-04	k: 2043	n:2150000
Cons ci ratio: 1.626326e-03	ci left: 7.292966e-01	ci right 7.304841e-01	k: 1569265	n:2150000
KS ci ratio: 1.270866e-01	ci left: 4.142115e-04	ci right 4.708692e-04	k: 950	n:2150000
RINL   2150000 perm   2164 sec   (994 perm/sec)   p_kst 4.418605e-04   p_cons 7.298907e-01   p_joint 9.502326e-04

Joint ci ratio: 8.651608e-02	ci left: 9.084487e-04	ci right 9.910468e-04	k: 2050	n:2160000
Cons ci ratio: 1.622523e-03	ci left: 7.293064e-01	ci right 7.304911e-01	k: 1576582	n:2160000
KS ci ratio: 1.268866e-01	ci left: 4.136386e-04	ci right 4.701222e-04	k: 953	n:2160000
RINL   2160000 perm   2182 sec   (990 perm/sec)   p_kst 4.412037e-04   p_cons 7.298991e-01   p_joint 9.490741e-04

Joint ci ratio: 8.638988e-02	ci left: 9.069675e-04	ci right 9.893046e-04	k: 2056	n:2170000
Cons ci ratio: 1.618944e-03	ci left: 7.292677e-01	ci right 7.304497e-01	k: 1583794	n:2170000
KS ci ratio: 1.264894e-01	ci left: 4.144098e-04	ci right 4.708083e-04	k: 959	n:2170000
RINL   2170000 perm   2200 sec   (986 perm/sec)   p_kst 4.419355e-04   p_cons 7.298590e-01   p_joint 9.474654e-04

Joint ci ratio: 8.620152e-02	ci left: 9.068464e-04	ci right 9.889840e-04	k: 2065	n:2180000
Cons ci ratio: 1.615247e-03	ci left: 7.292642e-01	ci right 7.304435e-01	k: 1591082	n:2180000
KS ci ratio: 1.262268e-01	ci left: 4.142857e-04	ci right 4.705415e-04	k: 963	n:2180000
RINL   2180000 perm   2219 sec   (982 perm/sec)   p_kst 4.417431e-04   p_cons 7.298541e-01   p_joint 9.472477e-04

Joint ci ratio: 8.601438e-02	ci left: 9.067267e-04	ci right 9.886661e-04	k: 2074	n:2190000
Cons ci ratio: 1.611505e-03	ci left: 7.292776e-01	ci right 7.304542e-01	k: 1598407	n:2190000
KS ci ratio: 1.259657e-01	ci left: 4.141628e-04	ci right 4.702770e-04	k: 967	n:2190000
RINL   2190000 perm   2237 sec   (979 perm/sec)   p_kst 4.415525e-04   p_cons 7.298662e-01   p_joint 9.470320e-04

Joint ci ratio: 8.576669e-02	ci left: 9.079426e-04	ci right 9.897439e-04	k: 2086	n:2200000
Cons ci ratio: 1.607846e-03	ci left: 7.292773e-01	ci right 7.304512e-01	k: 1605702	n:2200000
KS ci ratio: 1.257710e-01	ci left: 4.136010e-04	ci right 4.695459e-04	k: 970	n:2200000
RINL   2200000 perm   2256 sec   (975 perm/sec)   p_kst 4.409091e-04   p_cons 7.298645e-01   p_joint 9.481818e-04

Joint ci ratio: 8.554152e-02	ci left: 9.087050e-04	ci right 9.903493e-04	k: 2097	n:2210000
Cons ci ratio: 1.604293e-03	ci left: 7.292566e-01	ci right 7.304279e-01	k: 1612952	n:2210000
KS ci ratio: 1.254484e-01	ci left: 4.139208e-04	ci right 4.697547e-04	k: 975	n:2210000
RINL   2210000 perm   2275 sec   (972 perm/sec)   p_kst 4.411765e-04   p_cons 7.298425e-01   p_joint 9.488688e-04

Joint ci ratio: 8.541954e-02	ci left: 9.072567e-04	ci right 9.886488e-04	k: 2103	n:2220000
Cons ci ratio: 1.600679e-03	ci left: 7.292573e-01	ci right 7.304259e-01	k: 1620249	n:2220000
KS ci ratio: 1.251921e-01	ci left: 4.138016e-04	ci right 4.694970e-04	k: 979	n:2220000
RINL   2220000 perm   2293 sec   (968 perm/sec)   p_kst 4.409910e-04   p_cons 7.298419e-01   p_joint 9.472973e-04

Joint ci ratio: 8.527784e-02	ci left: 9.062602e-04	ci right 9.874214e-04	k: 2110	n:2230000
Cons ci ratio: 1.597119e-03	ci left: 7.292503e-01	ci right 7.304164e-01	k: 1627529	n:2230000
KS ci ratio: 1.250010e-01	ci left: 4.132492e-04	ci right 4.687790e-04	k: 982	n:2230000
RINL   2230000 perm   2312 sec   (964 perm/sec)   p_kst 4.403587e-04   p_cons 7.298336e-01   p_joint 9.461883e-04

Joint ci ratio: 8.509664e-02	ci left: 9.061467e-04	ci right 9.871167e-04	k: 2119	n:2240000
Cons ci ratio: 1.593655e-03	ci left: 7.292255e-01	ci right 7.303890e-01	k: 1634769	n:2240000
KS ci ratio: 1.247475e-01	ci left: 4.131343e-04	ci right 4.685277e-04	k: 986	n:2240000
RINL   2240000 perm   2331 sec   (961 perm/sec)   p_kst 4.401786e-04   p_cons 7.298076e-01   p_joint 9.459821e-04

Joint ci ratio: 8.489664e-02	ci left: 9.064694e-04	ci right 9.872684e-04	k: 2129	n:2250000
Cons ci ratio: 1.590088e-03	ci left: 7.292321e-01	ci right 7.303930e-01	k: 1642079	n:2250000
KS ci ratio: 1.244955e-01	ci left: 4.130205e-04	ci right 4.682785e-04	k: 990	n:2250000
RINL   2250000 perm   2350 sec   (957 perm/sec)   p_kst 4.400000e-04   p_cons 7.298129e-01   p_joint 9.462222e-04

Joint ci ratio: 8.471786e-02	ci left: 9.063563e-04	ci right 9.869667e-04	k: 2138	n:2260000
Cons ci ratio: 1.586578e-03	ci left: 7.292307e-01	ci right 7.303890e-01	k: 1649371	n:2260000
KS ci ratio: 1.241826e-01	ci left: 4.133365e-04	ci right 4.684877e-04	k: 995	n:2260000
RINL   2260000 perm   2369 sec   (954 perm/sec)   p_kst 4.402655e-04   p_cons 7.298102e-01   p_joint 9.460177e-04

Joint ci ratio: 8.457962e-02	ci left: 9.053819e-04	ci right 9.857678e-04	k: 2145	n:2270000
Cons ci ratio: 1.582986e-03	ci left: 7.292553e-01	ci right 7.304111e-01	k: 1656722	n:2270000
KS ci ratio: 1.239339e-01	ci left: 4.132231e-04	ci right 4.682406e-04	k: 999	n:2270000
RINL   2270000 perm   2388 sec   (951 perm/sec)   p_kst 4.400881e-04   p_cons 7.298335e-01   p_joint 9.449339e-04

Joint ci ratio: 8.436365e-02	ci left: 9.061336e-04	ci right 9.863707e-04	k: 2156	n:2280000
Cons ci ratio: 1.579650e-03	ci left: 7.292218e-01	ci right 7.303750e-01	k: 1663941	n:2280000
KS ci ratio: 1.236253e-01	ci left: 4.135358e-04	ci right 4.684478e-04	k: 1004	n:2280000
RINL   2280000 perm   2407 sec   (947 perm/sec)   p_kst 4.403509e-04   p_cons 7.297987e-01   p_joint 9.456140e-04

Joint ci ratio: 8.412991e-02	ci left: 9.073065e-04	ci right 9.874139e-04	k: 2168	n:2290000
Cons ci ratio: 1.576041e-03	ci left: 7.292619e-01	ci right 7.304126e-01	k: 1671328	n:2290000
KS ci ratio: 1.232578e-01	ci left: 4.142692e-04	ci right 4.691031e-04	k: 1010	n:2290000
RINL   2290000 perm   2426 sec   (944 perm/sec)   p_kst 4.410480e-04   p_cons 7.298376e-01   p_joint 9.467249e-04

Joint ci ratio: 8.387886e-02	ci left: 9.088952e-04	ci right 9.888917e-04	k: 2181	n:2300000
Cons ci ratio: 1.572588e-03	ci left: 7.292691e-01	ci right 7.304173e-01	k: 1678640	n:2300000
KS ci ratio: 1.228333e-01	ci left: 4.154178e-04	ci right 4.702006e-04	k: 1017	n:2300000
RINL   2300000 perm   2445 sec   (941 perm/sec)   p_kst 4.421739e-04   p_cons 7.298435e-01   p_joint 9.482609e-04

Joint ci ratio: 8.363003e-02	ci left: 9.104704e-04	ci right 9.903563e-04	k: 2194	n:2310000
Cons ci ratio: 1.569262e-03	ci left: 7.292498e-01	ci right 7.303955e-01	k: 1685891	n:2310000
KS ci ratio: 1.225327e-01	ci left: 4.157175e-04	ci right 4.703960e-04	k: 1022	n:2310000
RINL   2310000 perm   2465 sec   (937 perm/sec)   p_kst 4.424242e-04   p_cons 7.298229e-01   p_joint 9.497835e-04

Joint ci ratio: 8.345912e-02	ci left: 9.103443e-04	ci right 9.900478e-04	k: 2203	n:2320000
Cons ci ratio: 1.565788e-03	ci left: 7.292734e-01	ci right 7.304166e-01	k: 1693241	n:2320000
KS ci ratio: 1.224729e-01	ci left: 4.143435e-04	ci right 4.688127e-04	k: 1023	n:2320000
RINL   2320000 perm   2484 sec   (934 perm/sec)   p_kst 4.409483e-04   p_cons 7.298453e-01   p_joint 9.495690e-04

Joint ci ratio: 8.327042e-02	ci left: 9.106396e-04	ci right 9.901800e-04	k: 2213	n:2330000
Cons ci ratio: 1.562372e-03	ci left: 7.292877e-01	ci right 7.304284e-01	k: 1700570	n:2330000
KS ci ratio: 1.221157e-01	ci left: 4.150615e-04	ci right 4.694544e-04	k: 1029	n:2330000
RINL   2330000 perm   2503 sec   (931 perm/sec)   p_kst 4.416309e-04   p_cons 7.298584e-01   p_joint 9.497854e-04

Joint ci ratio: 8.313913e-02	ci left: 9.096771e-04	ci right 9.890021e-04	k: 2220	n:2340000
Cons ci ratio: 1.558940e-03	ci left: 7.293118e-01	ci right 7.304500e-01	k: 1707922	n:2340000
KS ci ratio: 1.219382e-01	ci left: 4.145306e-04	ci right 4.687694e-04	k: 1032	n:2340000
RINL   2340000 perm   2523 sec   (927 perm/sec)   p_kst 4.410256e-04   p_cons 7.298812e-01   p_joint 9.487179e-04

Joint ci ratio: 8.295259e-02	ci left: 9.099731e-04	ci right 9.891373e-04	k: 2230	n:2350000
Cons ci ratio: 1.555524e-03	ci left: 7.293374e-01	ci right 7.304731e-01	k: 1715278	n:2350000
KS ci ratio: 1.215856e-01	ci left: 4.152421e-04	ci right 4.694055e-04	k: 1038	n:2350000
RINL   2350000 perm   2543 sec   (924 perm/sec)   p_kst 4.417021e-04   p_cons 7.299055e-01   p_joint 9.489362e-04

Joint ci ratio: 8.280429e-02	ci left: 9.094369e-04	ci right 9.884061e-04	k: 2238	n:2360000
Cons ci ratio: 1.552109e-03	ci left: 7.293678e-01	ci right 7.305011e-01	k: 1722646	n:2360000
KS ci ratio: 1.211780e-01	ci left: 4.163587e-04	ci right 4.704726e-04	k: 1045	n:2360000
RINL   2360000 perm   2563 sec   (921 perm/sec)   p_kst 4.427966e-04   p_cons 7.299347e-01   p_joint 9.483051e-04

Joint ci ratio: 8.254654e-02	ci left: 9.113847e-04	ci right 9.902648e-04	k: 2252	n:2370000
Cons ci ratio: 1.548751e-03	ci left: 7.293895e-01	ci right 7.305205e-01	k: 1729994	n:2370000
KS ci ratio: 1.206028e-01	ci left: 4.186937e-04	ci right 4.728344e-04	k: 1055	n:2370000
RINL   2370000 perm   2583 sec   (918 perm/sec)   p_kst 4.451477e-04   p_cons 7.299553e-01   p_joint 9.502110e-04

Joint ci ratio: 8.230935e-02	ci left: 9.129050e-04	ci right 9.916788e-04	k: 2265	n:2380000
Cons ci ratio: 1.545516e-03	ci left: 7.293850e-01	ci right 7.305136e-01	k: 1737280	n:2380000
KS ci ratio: 1.200920e-01	ci left: 4.206022e-04	ci right 4.747430e-04	k: 1064	n:2380000
RINL   2380000 perm   2602 sec   (915 perm/sec)   p_kst 4.470588e-04   p_cons 7.299496e-01   p_joint 9.516807e-04

Joint ci ratio: 8.220066e-02	ci left: 9.115441e-04	ci right 9.900916e-04	k: 2271	n:2390000
Cons ci ratio: 1.542393e-03	ci left: 7.293571e-01	ci right 7.304833e-01	k: 1744510	n:2390000
KS ci ratio: 1.199232e-01	ci left: 4.200599e-04	ci right 4.740495e-04	k: 1067	n:2390000
RINL   2390000 perm   2623 sec   (911 perm/sec)   p_kst 4.464435e-04   p_cons 7.299205e-01   p_joint 9.502092e-04

Joint ci ratio: 8.203834e-02	ci left: 9.114190e-04	ci right 9.897932e-04	k: 2280	n:2400000
Cons ci ratio: 1.539149e-03	ci left: 7.293653e-01	ci right 7.304892e-01	k: 1751826	n:2400000
KS ci ratio: 1.196435e-01	ci left: 4.203306e-04	ci right 4.742200e-04	k: 1072	n:2400000
RINL   2400000 perm   2643 sec   (908 perm/sec)   p_kst 4.466667e-04   p_cons 7.299275e-01   p_joint 9.500000e-04

Joint ci ratio: 8.187698e-02	ci left: 9.112950e-04	ci right 9.894972e-04	k: 2289	n:2410000
Cons ci ratio: 1.535769e-03	ci left: 7.294137e-01	ci right 7.305351e-01	k: 1759239	n:2410000
KS ci ratio: 1.193103e-01	ci left: 4.210017e-04	ci right 4.748163e-04	k: 1078	n:2410000
RINL   2410000 perm   2663 sec   (905 perm/sec)   p_kst 4.473029e-04   p_cons 7.299747e-01   p_joint 9.497925e-04

Joint ci ratio: 8.180566e-02	ci left: 9.091484e-04	ci right 9.870951e-04	k: 2293	n:2420000
Cons ci ratio: 1.532518e-03	ci left: 7.294340e-01	ci right 7.305531e-01	k: 1766585	n:2420000
KS ci ratio: 1.192000e-01	ci left: 4.200638e-04	ci right 4.737053e-04	k: 1080	n:2420000
RINL   2420000 perm   2684 sec   (902 perm/sec)   p_kst 4.462810e-04   p_cons 7.299938e-01   p_joint 9.475207e-04

Joint ci ratio: 8.173452e-02	ci left: 9.070194e-04	ci right 9.847128e-04	k: 2297	n:2430000
Cons ci ratio: 1.529373e-03	ci left: 7.294323e-01	ci right 7.305491e-01	k: 1773878	n:2430000
KS ci ratio: 1.191449e-01	ci left: 4.187344e-04	ci right 4.721797e-04	k: 1081	n:2430000
RINL   2430000 perm   2704 sec   (899 perm/sec)   p_kst 4.448560e-04   p_cons 7.299909e-01   p_joint 9.452675e-04

Joint ci ratio: 8.150425e-02	ci left: 9.085213e-04	ci right 9.861136e-04	k: 2310	n:2440000
Cons ci ratio: 1.526337e-03	ci left: 7.294072e-01	ci right 7.305218e-01	k: 1781114	n:2440000
KS ci ratio: 1.187613e-01	ci left: 4.198018e-04	ci right 4.731987e-04	k: 1088	n:2440000
RINL   2440000 perm   2724 sec   (896 perm/sec)   p_kst 4.459016e-04   p_cons 7.299648e-01   p_joint 9.467213e-04

Joint ci ratio: 8.134601e-02	ci left: 9.084117e-04	ci right 9.858369e-04	k: 2319	n:2450000
Cons ci ratio: 1.523276e-03	ci left: 7.293934e-01	ci right 7.305057e-01	k: 1788377	n:2450000
KS ci ratio: 1.185438e-01	ci left: 4.196725e-04	ci right 4.729484e-04	k: 1092	n:2450000
RINL   2450000 perm   2744 sec   (893 perm/sec)   p_kst 4.457143e-04   p_cons 7.299498e-01   p_joint 9.465306e-04

Joint ci ratio: 8.117125e-02	ci left: 9.087014e-04	ci right 9.859771e-04	k: 2329	n:2460000
Cons ci ratio: 1.520092e-03	ci left: 7.294167e-01	ci right 7.305267e-01	k: 1795731	n:2460000
KS ci ratio: 1.181123e-01	ci left: 4.211223e-04	ci right 4.743741e-04	k: 1100	n:2460000
RINL   2460000 perm   2765 sec   (890 perm/sec)   p_kst 4.471545e-04   p_cons 7.299720e-01   p_joint 9.467480e-04

Joint ci ratio: 8.099762e-02	ci left: 9.089890e-04	ci right 9.861159e-04	k: 2339	n:2470000
Cons ci ratio: 1.517053e-03	ci left: 7.294070e-01	ci right 7.305148e-01	k: 1803004	n:2470000
KS ci ratio: 1.180588e-01	ci left: 4.198103e-04	ci right 4.728704e-04	k: 1101	n:2470000
RINL   2470000 perm   2786 sec   (887 perm/sec)   p_kst 4.457490e-04   p_cons 7.299611e-01   p_joint 9.469636e-04

Joint ci ratio: 8.082509e-02	ci left: 9.092744e-04	ci right 9.862534e-04	k: 2349	n:2480000
Cons ci ratio: 1.514057e-03	ci left: 7.293909e-01	ci right 7.304965e-01	k: 1810261	n:2480000
KS ci ratio: 1.178451e-01	ci left: 4.196828e-04	ci right 4.726241e-04	k: 1105	n:2480000
RINL   2480000 perm   2806 sec   (884 perm/sec)   p_kst 4.455645e-04   p_cons 7.299440e-01   p_joint 9.471774e-04

Joint ci ratio: 8.065366e-02	ci left: 9.095576e-04	ci right 9.863897e-04	k: 2359	n:2490000
Cons ci ratio: 1.511001e-03	ci left: 7.293955e-01	ci right 7.304988e-01	k: 1817569	n:2490000
KS ci ratio: 1.176856e-01	ci left: 4.191666e-04	ci right 4.719663e-04	k: 1108	n:2490000
RINL   2490000 perm   2827 sec   (881 perm/sec)   p_kst 4.449799e-04   p_cons 7.299474e-01   p_joint 9.473896e-04

Joint ci ratio: 8.046632e-02	ci left: 9.102308e-04	ci right 9.869328e-04	k: 2370	n:2500000
Cons ci ratio: 1.507945e-03	ci left: 7.294048e-01	ci right 7.305059e-01	k: 1824889	n:2500000
KS ci ratio: 1.174740e-01	ci left: 4.190429e-04	ci right 4.717255e-04	k: 1112	n:2500000
RINL   2500000 perm   2849 sec   (877 perm/sec)   p_kst 4.448000e-04   p_cons 7.299556e-01   p_joint 9.480000e-04

Joint ci ratio: 8.031405e-02	ci left: 9.101179e-04	ci right 9.866585e-04	k: 2379	n:2510000
Cons ci ratio: 1.504945e-03	ci left: 7.294041e-01	ci right 7.305030e-01	k: 1832184	n:2510000
KS ci ratio: 1.172110e-01	ci left: 4.193070e-04	ci right 4.718966e-04	k: 1117	n:2510000
RINL   2510000 perm   2870 sec   (875 perm/sec)   p_kst 4.450199e-04   p_cons 7.299538e-01   p_joint 9.478088e-04

Joint ci ratio: 8.011230e-02	ci left: 9.111728e-04	ci right 9.876005e-04	k: 2391	n:2520000
Cons ci ratio: 1.501885e-03	ci left: 7.294236e-01	ci right 7.305203e-01	k: 1839530	n:2520000
KS ci ratio: 1.168977e-01	ci left: 4.199543e-04	ci right 4.724746e-04	k: 1123	n:2520000
RINL   2520000 perm   2891 sec   (872 perm/sec)   p_kst 4.456349e-04   p_cons 7.299722e-01   p_joint 9.488095e-04

Joint ci ratio: 8.002877e-02	ci left: 9.095080e-04	ci right 9.857129e-04	k: 2396	n:2530000
Cons ci ratio: 1.498923e-03	ci left: 7.294224e-01	ci right 7.305170e-01	k: 1846824	n:2530000
KS ci ratio: 1.167939e-01	ci left: 4.190618e-04	ci right 4.714207e-04	k: 1125	n:2530000
RINL   2530000 perm   2912 sec   (869 perm/sec)   p_kst 4.446640e-04   p_cons 7.299700e-01   p_joint 9.470356e-04

Joint ci ratio: 7.989558e-02	ci left: 9.090139e-04	ci right 9.850447e-04	k: 2404	n:2540000
Cons ci ratio: 1.495972e-03	ci left: 7.294228e-01	ci right 7.305152e-01	k: 1854122	n:2540000
KS ci ratio: 1.166386e-01	ci left: 4.185586e-04	ci right 4.707803e-04	k: 1128	n:2540000
RINL   2540000 perm   2933 sec   (866 perm/sec)   p_kst 4.440945e-04   p_cons 7.299693e-01   p_joint 9.464567e-04

Joint ci ratio: 7.958169e-02	ci left: 9.127516e-04	ci right 9.887812e-04	k: 2423	n:2550000
Cons ci ratio: 1.493049e-03	ci left: 7.294205e-01	ci right 7.305107e-01	k: 1861413	n:2550000
KS ci ratio: 1.161254e-01	ci left: 4.207246e-04	ci right 4.729698e-04	k: 1138	n:2550000
RINL   2550000 perm   2954 sec   (863 perm/sec)   p_kst 4.462745e-04   p_cons 7.299659e-01   p_joint 9.501961e-04

Joint ci ratio: 7.938540e-02	ci left: 9.137805e-04	ci right 9.896994e-04	k: 2435	n:2560000
Cons ci ratio: 1.490063e-03	ci left: 7.294393e-01	ci right 7.305274e-01	k: 1868758	n:2560000
KS ci ratio: 1.157701e-01	ci left: 4.217362e-04	ci right 4.739358e-04	k: 1145	n:2560000
RINL   2560000 perm   2974 sec   (861 perm/sec)   p_kst 4.472656e-04   p_cons 7.299836e-01   p_joint 9.511719e-04

Joint ci ratio: 7.925539e-02	ci left: 9.132760e-04	ci right 9.890230e-04	k: 2443	n:2570000
Cons ci ratio: 1.487196e-03	ci left: 7.294311e-01	ci right 7.305171e-01	k: 1876034	n:2570000
KS ci ratio: 1.155184e-01	ci left: 4.219845e-04	ci right 4.740935e-04	k: 1150	n:2570000
RINL   2570000 perm   2995 sec   (858 perm/sec)   p_kst 4.474708e-04   p_cons 7.299743e-01   p_joint 9.505837e-04

Joint ci ratio: 7.912601e-02	ci left: 9.127756e-04	ci right 9.883518e-04	k: 2451	n:2580000
Cons ci ratio: 1.484347e-03	ci left: 7.294225e-01	ci right 7.305064e-01	k: 1883309	n:2580000
KS ci ratio: 1.152184e-01	ci left: 4.226074e-04	ci right 4.746486e-04	k: 1156	n:2580000
RINL   2580000 perm   3016 sec   (856 perm/sec)   p_kst 4.480620e-04   p_cons 7.299647e-01   p_joint 9.500000e-04

Joint ci ratio: 7.894910e-02	ci left: 9.134145e-04	ci right 9.888668e-04	k: 2462	n:2590000
Cons ci ratio: 1.481548e-03	ci left: 7.294052e-01	ci right 7.304870e-01	k: 1890561	n:2590000
KS ci ratio: 1.149702e-01	ci left: 4.228506e-04	ci right 4.748020e-04	k: 1161	n:2590000
RINL   2590000 perm   3037 sec   (853 perm/sec)   p_kst 4.482625e-04   p_cons 7.299463e-01   p_joint 9.505792e-04

Joint ci ratio: 7.882122e-02	ci left: 9.129176e-04	ci right 9.882010e-04	k: 2470	n:2600000
Cons ci ratio: 1.478664e-03	ci left: 7.294149e-01	ci right 7.304946e-01	k: 1897883	n:2600000
KS ci ratio: 1.147729e-01	ci left: 4.227185e-04	ci right 4.745585e-04	k: 1165	n:2600000
RINL   2600000 perm   3057 sec   (850 perm/sec)   p_kst 4.480769e-04   p_cons 7.299550e-01   p_joint 9.500000e-04

Joint ci ratio: 7.859880e-02	ci left: 9.146783e-04	ci right 9.898843e-04	k: 2484	n:2610000
Cons ci ratio: 1.475896e-03	ci left: 7.293977e-01	ci right 7.304754e-01	k: 1905135	n:2610000
KS ci ratio: 1.145276e-01	ci left: 4.229597e-04	ci right 4.747109e-04	k: 1170	n:2610000
RINL   2610000 perm   3078 sec   (848 perm/sec)   p_kst 4.482759e-04   p_cons 7.299368e-01   p_joint 9.517241e-04

Joint ci ratio: 7.844113e-02	ci left: 9.149290e-04	ci right 9.899979e-04	k: 2494	n:2620000
Cons ci ratio: 1.472982e-03	ci left: 7.294242e-01	ci right 7.304998e-01	k: 1912501	n:2620000
KS ci ratio: 1.142838e-01	ci left: 4.231991e-04	ci right 4.748620e-04	k: 1175	n:2620000
RINL   2620000 perm   3100 sec   (845 perm/sec)   p_kst 4.484733e-04   p_cons 7.299622e-01   p_joint 9.519084e-04

Joint ci ratio: 7.833136e-02	ci left: 9.140596e-04	ci right 9.889474e-04	k: 2501	n:2630000
Cons ci ratio: 1.470149e-03	ci left: 7.294333e-01	ci right 7.305069e-01	k: 1919822	n:2630000
KS ci ratio: 1.142354e-01	ci left: 4.219594e-04	ci right 4.734475e-04	k: 1176	n:2630000
RINL   2630000 perm   3121 sec   (843 perm/sec)   p_kst 4.471483e-04   p_cons 7.299703e-01   p_joint 9.509506e-04

Joint ci ratio: 7.819086e-02	ci left: 9.139396e-04	ci right 9.886772e-04	k: 2510	n:2640000
Cons ci ratio: 1.467429e-03	ci left: 7.294163e-01	ci right 7.304878e-01	k: 1927074	n:2640000
KS ci ratio: 1.139935e-01	ci left: 4.222009e-04	ci right 4.736022e-04	k: 1181	n:2640000
RINL   2640000 perm   3142 sec   (840 perm/sec)   p_kst 4.473485e-04   p_cons 7.299523e-01   p_joint 9.507576e-04

Joint ci ratio: 7.803562e-02	ci left: 9.141907e-04	ci right 9.887936e-04	k: 2520	n:2650000
Cons ci ratio: 1.464567e-03	ci left: 7.294416e-01	ci right 7.305111e-01	k: 1934438	n:2650000
KS ci ratio: 1.137531e-01	ci left: 4.224408e-04	ci right 4.737555e-04	k: 1186	n:2650000
RINL   2650000 perm   3163 sec   (838 perm/sec)   p_kst 4.475472e-04   p_cons 7.299766e-01   p_joint 9.509434e-04

Joint ci ratio: 7.791212e-02	ci left: 9.137027e-04	ci right 9.881425e-04	k: 2528	n:2660000
Cons ci ratio: 1.461691e-03	ci left: 7.294751e-01	ci right 7.305425e-01	k: 1941824	n:2660000
KS ci ratio: 1.134667e-01	ci left: 4.230442e-04	ci right 4.742941e-04	k: 1192	n:2660000
RINL   2660000 perm   3185 sec   (835 perm/sec)   p_kst 4.481203e-04   p_cons 7.300090e-01   p_joint 9.503759e-04

Joint ci ratio: 7.783528e-02	ci left: 9.121168e-04	ci right 9.863507e-04	k: 2533	n:2670000
Cons ci ratio: 1.458863e-03	ci left: 7.295000e-01	ci right 7.305654e-01	k: 1949188	n:2670000
KS ci ratio: 1.133243e-01	ci left: 4.225515e-04	ci right 4.736732e-04	k: 1195	n:2670000
RINL   2670000 perm   3207 sec   (833 perm/sec)   p_kst 4.475655e-04   p_cons 7.300330e-01   p_joint 9.486891e-04

Joint ci ratio: 7.769743e-02	ci left: 9.120063e-04	ci right 9.860938e-04	k: 2542	n:2680000
Cons ci ratio: 1.456215e-03	ci left: 7.294804e-01	ci right 7.305438e-01	k: 1956433	n:2680000
KS ci ratio: 1.131353e-01	ci left: 4.224251e-04	ci right 4.734406e-04	k: 1199	n:2680000
RINL   2680000 perm   3229 sec   (830 perm/sec)   p_kst 4.473881e-04   p_cons 7.300123e-01   p_joint 9.485075e-04

Joint ci ratio: 7.756031e-02	ci left: 9.118967e-04	ci right 9.858387e-04	k: 2551	n:2690000
Cons ci ratio: 1.453510e-03	ci left: 7.294802e-01	ci right 7.305416e-01	k: 1963730	n:2690000
KS ci ratio: 1.129942e-01	ci left: 4.219384e-04	ci right 4.728273e-04	k: 1202	n:2690000
RINL   2690000 perm   3251 sec   (827 perm/sec)   p_kst 4.468401e-04   p_cons 7.300112e-01   p_joint 9.483271e-04

Joint ci ratio: 7.748451e-02	ci left: 9.103352e-04	ci right 9.840752e-04	k: 2556	n:2700000
Cons ci ratio: 1.450801e-03	ci left: 7.294852e-01	ci right 7.305447e-01	k: 1971041	n:2700000
KS ci ratio: 1.129004e-01	ci left: 4.210955e-04	ci right 4.718378e-04	k: 1204	n:2700000
RINL   2700000 perm   3273 sec   (825 perm/sec)   p_kst 4.459259e-04   p_cons 7.300152e-01   p_joint 9.466667e-04

Joint ci ratio: 7.739381e-02	ci left: 9.091472e-04	ci right 9.827008e-04	k: 2562	n:2710000
Cons ci ratio: 1.448152e-03	ci left: 7.294780e-01	ci right 7.305355e-01	k: 1978319	n:2710000
KS ci ratio: 1.127135e-01	ci left: 4.209760e-04	ci right 4.716144e-04	k: 1208	n:2710000
RINL   2710000 perm   3296 sec   (822 perm/sec)   p_kst 4.457565e-04   p_cons 7.300070e-01   p_joint 9.453875e-04

Joint ci ratio: 7.727332e-02	ci left: 9.086890e-04	ci right 9.820860e-04	k: 2570	n:2720000
Cons ci ratio: 1.445478e-03	ci left: 7.294815e-01	ci right 7.305371e-01	k: 1985626	n:2720000
KS ci ratio: 1.125275e-01	ci left: 4.208574e-04	ci right 4.713925e-04	k: 1212	n:2720000
RINL   2720000 perm   3320 sec   (819 perm/sec)   p_kst 4.455882e-04   p_cons 7.300096e-01   p_joint 9.448529e-04

Joint ci ratio: 7.719836e-02	ci left: 9.071566e-04	ci right 9.803555e-04	k: 2575	n:2730000
Cons ci ratio: 1.442787e-03	ci left: 7.294938e-01	ci right 7.305474e-01	k: 1992957	n:2730000
KS ci ratio: 1.123887e-01	ci left: 4.203838e-04	ci right 4.707956e-04	k: 1215	n:2730000
RINL   2730000 perm   3342 sec   (817 perm/sec)   p_kst 4.450549e-04   p_cons 7.300209e-01   p_joint 9.432234e-04

Joint ci ratio: 7.703404e-02	ci left: 9.077830e-04	ci right 9.808696e-04	k: 2586	n:2740000
Cons ci ratio: 1.440078e-03	ci left: 7.295148e-01	ci right 7.305665e-01	k: 2000312	n:2740000
KS ci ratio: 1.120665e-01	ci left: 4.213326e-04	ci right 4.717037e-04	k: 1222	n:2740000
RINL   2740000 perm   3365 sec   (814 perm/sec)   p_kst 4.459854e-04   p_cons 7.300409e-01   p_joint 9.437956e-04

Joint ci ratio: 7.688557e-02	ci left: 9.080483e-04	ci right 9.810091e-04	k: 2596	n:2750000
Cons ci ratio: 1.437514e-03	ci left: 7.295003e-01	ci right 7.305501e-01	k: 2007570	n:2750000
KS ci ratio: 1.119750e-01	ci left: 4.205074e-04	ci right 4.707361e-04	k: 1224	n:2750000
RINL   2750000 perm   3388 sec   (812 perm/sec)   p_kst 4.450909e-04   p_cons 7.300255e-01   p_joint 9.440000e-04

Joint ci ratio: 7.675270e-02	ci left: 9.079565e-04	ci right 9.807782e-04	k: 2605	n:2760000
Cons ci ratio: 1.434955e-03	ci left: 7.294881e-01	ci right 7.305360e-01	k: 2014834	n:2760000
KS ci ratio: 1.118382e-01	ci left: 4.200403e-04	ci right 4.701479e-04	k: 1227	n:2760000
RINL   2760000 perm   3411 sec   (809 perm/sec)   p_kst 4.445652e-04   p_cons 7.300123e-01   p_joint 9.438406e-04

Joint ci ratio: 7.662051e-02	ci left: 9.078655e-04	ci right 9.805489e-04	k: 2614	n:2770000
Cons ci ratio: 1.432363e-03	ci left: 7.294890e-01	ci right 7.305350e-01	k: 2022134	n:2770000
KS ci ratio: 1.115659e-01	ci left: 4.206295e-04	ci right 4.706772e-04	k: 1233	n:2770000
RINL   2770000 perm   3434 sec   (807 perm/sec)   p_kst 4.451264e-04   p_cons 7.300123e-01   p_joint 9.436823e-04

Joint ci ratio: 7.647442e-02	ci left: 9.081281e-04	ci right 9.806877e-04	k: 2624	n:2780000
Cons ci ratio: 1.429846e-03	ci left: 7.294730e-01	ci right 7.305171e-01	k: 2029387	n:2780000
KS ci ratio: 1.112957e-01	ci left: 4.212146e-04	ci right 4.712025e-04	k: 1239	n:2780000
RINL   2780000 perm   3457 sec   (804 perm/sec)   p_kst 4.456835e-04   p_cons 7.299953e-01   p_joint 9.438849e-04

Joint ci ratio: 7.632916e-02	ci left: 9.083889e-04	ci right 9.808254e-04	k: 2634	n:2790000
Cons ci ratio: 1.427278e-03	ci left: 7.294747e-01	ci right 7.305169e-01	k: 2036689	n:2790000
KS ci ratio: 1.111166e-01	ci left: 4.210986e-04	ci right 4.709872e-04	k: 1243	n:2790000
RINL   2790000 perm   3480 sec   (802 perm/sec)   p_kst 4.455197e-04   p_cons 7.299961e-01   p_joint 9.440860e-04

Joint ci ratio: 7.619915e-02	ci left: 9.082976e-04	ci right 9.805980e-04	k: 2643	n:2800000
Cons ci ratio: 1.424779e-03	ci left: 7.294613e-01	ci right 7.305017e-01	k: 2043949	n:2800000
KS ci ratio: 1.109829e-01	ci left: 4.206364e-04	ci right 4.704062e-04	k: 1246	n:2800000
RINL   2800000 perm   3504 sec   (799 perm/sec)   p_kst 4.450000e-04   p_cons 7.299818e-01   p_joint 9.439286e-04

Joint ci ratio: 7.605545e-02	ci left: 9.085562e-04	ci right 9.807348e-04	k: 2653	n:2810000
Cons ci ratio: 1.422272e-03	ci left: 7.294538e-01	ci right 7.304924e-01	k: 2051225	n:2810000
KS ci ratio: 1.108053e-01	ci left: 4.205235e-04	ci right 4.701952e-04	k: 1250	n:2810000
RINL   2810000 perm   3527 sec   (797 perm/sec)   p_kst 4.448399e-04   p_cons 7.299733e-01   p_joint 9.441281e-04

Joint ci ratio: 7.596967e-02	ci left: 9.074216e-04	ci right 9.794251e-04	k: 2659	n:2820000
Cons ci ratio: 1.419741e-03	ci left: 7.294566e-01	ci right 7.304933e-01	k: 2058530	n:2820000
KS ci ratio: 1.106727e-01	ci left: 4.200666e-04	ci right 4.696211e-04	k: 1253	n:2820000
RINL   2820000 perm   3551 sec   (794 perm/sec)   p_kst 4.443262e-04   p_cons 7.299752e-01   p_joint 9.429078e-04

Joint ci ratio: 7.591269e-02	ci left: 9.056017e-04	ci right 9.774046e-04	k: 2663	n:2830000
Cons ci ratio: 1.417228e-03	ci left: 7.294583e-01	ci right 7.304932e-01	k: 2065832	n:2830000
KS ci ratio: 1.106728e-01	ci left: 4.185823e-04	ci right 4.679617e-04	k: 1253	n:2830000
RINL   2830000 perm   3574 sec   (792 perm/sec)   p_kst 4.427562e-04   p_cons 7.299760e-01   p_joint 9.409894e-04

Joint ci ratio: 7.578479e-02	ci left: 9.055219e-04	ci right 9.771921e-04	k: 2672	n:2840000
Cons ci ratio: 1.414739e-03	ci left: 7.294568e-01	ci right 7.304899e-01	k: 2073125	n:2840000
KS ci ratio: 1.104090e-01	ci left: 4.191626e-04	ci right 4.684850e-04	k: 1259	n:2840000
RINL   2840000 perm   3598 sec   (789 perm/sec)   p_kst 4.433099e-04   p_cons 7.299736e-01   p_joint 9.408451e-04

Joint ci ratio: 7.572822e-02	ci left: 9.037215e-04	ci right 9.751935e-04	k: 2676	n:2850000
Cons ci ratio: 1.412297e-03	ci left: 7.294459e-01	ci right 7.304771e-01	k: 2080391	n:2850000
KS ci ratio: 1.103652e-01	ci left: 4.180331e-04	ci right 4.672017e-04	k: 1260	n:2850000
RINL   2850000 perm   3621 sec   (787 perm/sec)   p_kst 4.421053e-04   p_cons 7.299618e-01   p_joint 9.389474e-04

Joint ci ratio: 7.560125e-02	ci left: 9.036490e-04	ci right 9.749901e-04	k: 2685	n:2860000
Cons ci ratio: 1.409757e-03	ci left: 7.294662e-01	ci right 7.304956e-01	k: 2087746	n:2860000
KS ci ratio: 1.101906e-01	ci left: 4.179314e-04	ci right 4.670053e-04	k: 1264	n:2860000
RINL   2860000 perm   3646 sec   (784 perm/sec)   p_kst 4.419580e-04   p_cons 7.299811e-01   p_joint 9.388112e-04

Joint ci ratio: 7.547491e-02	ci left: 9.035770e-04	ci right 9.747880e-04	k: 2694	n:2870000
Cons ci ratio: 1.407340e-03	ci left: 7.294556e-01	ci right 7.304833e-01	k: 2095013	n:2870000
KS ci ratio: 1.099302e-01	ci left: 4.185083e-04	ci right 4.675262e-04	k: 1270	n:2870000
RINL   2870000 perm   3671 sec   (782 perm/sec)   p_kst 4.425087e-04   p_cons 7.299697e-01   p_joint 9.386760e-04

Joint ci ratio: 7.526567e-02	ci left: 9.055498e-04	ci right 9.767098e-04	k: 2709	n:2880000
Cons ci ratio: 1.404870e-03	ci left: 7.294632e-01	ci right 7.304891e-01	k: 2102332	n:2880000
KS ci ratio: 1.096716e-01	ci left: 4.190813e-04	ci right 4.680434e-04	k: 1276	n:2880000
RINL   2880000 perm   3696 sec   (779 perm/sec)   p_kst 4.430556e-04   p_cons 7.299764e-01   p_joint 9.406250e-04

Joint ci ratio: 7.515484e-02	ci left: 9.051325e-04	ci right 9.761504e-04	k: 2717	n:2890000
Cons ci ratio: 1.402397e-03	ci left: 7.294756e-01	ci right 7.304997e-01	k: 2109665	n:2890000
KS ci ratio: 1.095003e-01	ci left: 4.189773e-04	ci right 4.678459e-04	k: 1280	n:2890000
RINL   2890000 perm   3719 sec   (777 perm/sec)   p_kst 4.429066e-04   p_cons 7.299879e-01   p_joint 9.401384e-04

Joint ci ratio: 7.501696e-02	ci left: 9.053949e-04	ci right 9.762974e-04	k: 2727	n:2900000
Cons ci ratio: 1.400040e-03	ci left: 7.294586e-01	ci right 7.304809e-01	k: 2116913	n:2900000
KS ci ratio: 1.092872e-01	ci left: 4.192095e-04	ci right 4.680039e-04	k: 1285	n:2900000
RINL   2900000 perm   3743 sec   (775 perm/sec)   p_kst 4.431034e-04   p_cons 7.299700e-01   p_joint 9.403448e-04

Joint ci ratio: 7.481149e-02	ci left: 9.073417e-04	ci right 9.781935e-04	k: 2742	n:2910000
Cons ci ratio: 1.397603e-03	ci left: 7.294678e-01	ci right 7.304884e-01	k: 2124237	n:2910000
KS ci ratio: 1.089909e-01	ci left: 4.201088e-04	ci right 4.688668e-04	k: 1292	n:2910000
RINL   2910000 perm   3767 sec   (773 perm/sec)   p_kst 4.439863e-04   p_cons 7.299784e-01   p_joint 9.422680e-04

Joint ci ratio: 7.477070e-02	ci left: 9.052425e-04	ci right 9.758902e-04	k: 2745	n:2920000
Cons ci ratio: 1.395218e-03	ci left: 7.294657e-01	ci right 7.304845e-01	k: 2131528	n:2920000
KS ci ratio: 1.089488e-01	ci left: 4.190032e-04	ci right 4.676129e-04	k: 1293	n:2920000
RINL   2920000 perm   3791 sec   (770 perm/sec)   p_kst 4.428082e-04   p_cons 7.299753e-01   p_joint 9.400685e-04

Joint ci ratio: 7.454022e-02	ci left: 9.078467e-04	ci right 9.784698e-04	k: 2762	n:2930000
Cons ci ratio: 1.392818e-03	ci left: 7.294715e-01	ci right 7.304885e-01	k: 2138842	n:2930000
KS ci ratio: 1.085302e-01	ci left: 4.208933e-04	ci right 4.695227e-04	k: 1303	n:2930000
RINL   2930000 perm   3815 sec   (768 perm/sec)   p_kst 4.447099e-04   p_cons 7.299802e-01   p_joint 9.426621e-04

Joint ci ratio: 7.435203e-02	ci left: 9.094321e-04	ci right 9.799922e-04	k: 2776	n:2940000
Cons ci ratio: 1.390374e-03	ci left: 7.294931e-01	ci right 7.305084e-01	k: 2146203	n:2940000
KS ci ratio: 1.081575e-01	ci left: 4.224400e-04	ci right 4.710698e-04	k: 1312	n:2940000
RINL   2940000 perm   3839 sec   (766 perm/sec)   p_kst 4.462585e-04   p_cons 7.300010e-01   p_joint 9.442177e-04

Joint ci ratio: 7.423185e-02	ci left: 9.093434e-04	ci right 9.797777e-04	k: 2785	n:2950000
Cons ci ratio: 1.387996e-03	ci left: 7.294994e-01	ci right 7.305130e-01	k: 2153519	n:2950000
KS ci ratio: 1.079931e-01	ci left: 4.223273e-04	ci right 4.708655e-04	k: 1316	n:2950000
RINL   2950000 perm   3863 sec   (764 perm/sec)   p_kst 4.461017e-04   p_cons 7.300064e-01   p_joint 9.440678e-04

Joint ci ratio: 7.407246e-02	ci left: 9.102502e-04	ci right 9.805968e-04	k: 2797	n:2960000
Cons ci ratio: 1.385583e-03	ci left: 7.295192e-01	ci right 7.305310e-01	k: 2160875	n:2960000
KS ci ratio: 1.077072e-01	ci left: 4.232016e-04	ci right 4.717034e-04	k: 1323	n:2960000
RINL   2960000 perm   3887 sec   (761 perm/sec)   p_kst 4.469595e-04   p_cons 7.300253e-01   p_joint 9.449324e-04

Joint ci ratio: 7.392727e-02	ci left: 9.108206e-04	ci right 9.810674e-04	k: 2808	n:2970000
Cons ci ratio: 1.383327e-03	ci left: 7.294977e-01	ci right 7.305079e-01	k: 2168109	n:2970000
KS ci ratio: 1.074640e-01	ci left: 4.237425e-04	ci right 4.721897e-04	k: 1329	n:2970000
RINL   2970000 perm   3911 sec   (759 perm/sec)   p_kst 4.474747e-04   p_cons 7.300030e-01   p_joint 9.454545e-04

Joint ci ratio: 7.382224e-02	ci left: 9.103991e-04	ci right 9.805093e-04	k: 2816	n:2980000
Cons ci ratio: 1.381009e-03	ci left: 7.294972e-01	ci right 7.305057e-01	k: 2175405	n:2980000
KS ci ratio: 1.073027e-01	ci left: 4.236268e-04	ci right 4.719835e-04	k: 1333	n:2980000
RINL   2980000 perm   3936 sec   (757 perm/sec)   p_kst 4.473154e-04   p_cons 7.300017e-01   p_joint 9.449664e-04

Joint ci ratio: 7.369155e-02	ci left: 9.106371e-04	ci right 9.806362e-04	k: 2826	n:2990000
Cons ci ratio: 1.378605e-03	ci left: 7.295245e-01	ci right 7.305312e-01	k: 2182784	n:2990000
KS ci ratio: 1.071022e-01	ci left: 4.238374e-04	ci right 4.721220e-04	k: 1338	n:2990000
RINL   2990000 perm   3960 sec   (755 perm/sec)   p_kst 4.474916e-04   p_cons 7.300281e-01   p_joint 9.451505e-04

Joint ci ratio: 7.360051e-02	ci left: 9.098920e-04	ci right 9.797437e-04	k: 2833	n:3000000
Cons ci ratio: 1.376295e-03	ci left: 7.295283e-01	ci right 7.305333e-01	k: 2190093	n:3000000
KS ci ratio: 1.069825e-01	ci left: 4.233978e-04	ci right 4.715750e-04	k: 1341	n:3000000
RINL   3000000 perm   3984 sec   (753 perm/sec)   p_kst 4.470000e-04   p_cons 7.300310e-01   p_joint 9.443333e-04

Joint ci ratio: 7.344515e-02	ci left: 9.107825e-04	ci right 9.805487e-04	k: 2845	n:3010000
Cons ci ratio: 1.374046e-03	ci left: 7.295180e-01	ci right 7.305214e-01	k: 2197360	n:3010000
KS ci ratio: 1.067441e-01	ci left: 4.239312e-04	ci right 4.720549e-04	k: 1347	n:3010000
RINL   3010000 perm   4009 sec   (751 perm/sec)   p_kst 4.475083e-04   p_cons 7.300199e-01   p_joint 9.451827e-04

Joint ci ratio: 7.321389e-02	ci left: 9.136177e-04	ci right 9.833714e-04	k: 2863	n:3020000
Cons ci ratio: 1.371827e-03	ci left: 7.295022e-01	ci right 7.305040e-01	k: 2204610	n:3020000
KS ci ratio: 1.063502e-01	ci left: 4.257505e-04	ci right 4.738913e-04	k: 1357	n:3020000
RINL   3020000 perm   4034 sec   (749 perm/sec)   p_kst 4.493377e-04   p_cons 7.300033e-01   p_joint 9.480132e-04

Joint ci ratio: 7.308640e-02	ci left: 9.138425e-04	ci right 9.834866e-04	k: 2873	n:3030000
Cons ci ratio: 1.369517e-03	ci left: 7.295159e-01	ci right 7.305160e-01	k: 2211949	n:3030000
KS ci ratio: 1.061550e-01	ci left: 4.259517e-04	ci right 4.740213e-04	k: 1362	n:3030000
RINL   3030000 perm   4059 sec   (747 perm/sec)   p_kst 4.495050e-04   p_cons 7.300162e-01   p_joint 9.481848e-04

Joint ci ratio: 7.297223e-02	ci left: 9.137429e-04	ci right 9.832660e-04	k: 2882	n:3040000
Cons ci ratio: 1.367274e-03	ci left: 7.295134e-01	ci right 7.305118e-01	k: 2219239	n:3040000
KS ci ratio: 1.059996e-01	ci left: 4.258314e-04	ci right 4.738127e-04	k: 1366	n:3040000
RINL   3040000 perm   4083 sec   (745 perm/sec)   p_kst 4.493421e-04   p_cons 7.300128e-01   p_joint 9.480263e-04

Joint ci ratio: 7.285861e-02	ci left: 9.136440e-04	ci right 9.830468e-04	k: 2891	n:3050000
Cons ci ratio: 1.365108e-03	ci left: 7.294919e-01	ci right 7.304887e-01	k: 2226471	n:3050000
KS ci ratio: 1.058062e-01	ci left: 4.260312e-04	ci right 4.739419e-04	k: 1371	n:3050000
RINL   3050000 perm   4108 sec   (742 perm/sec)   p_kst 4.495082e-04   p_cons 7.299905e-01   p_joint 9.478689e-04

Joint ci ratio: 7.272042e-02	ci left: 9.141876e-04	ci right 9.834944e-04	k: 2902	n:3060000
Cons ci ratio: 1.362999e-03	ci left: 7.294571e-01	ci right 7.304523e-01	k: 2233662	n:3060000
KS ci ratio: 1.056140e-01	ci left: 4.262297e-04	ci right 4.740703e-04	k: 1376	n:3060000
RINL   3060000 perm   4133 sec   (740 perm/sec)   p_kst 4.496732e-04   p_cons 7.299549e-01   p_joint 9.483660e-04

Joint ci ratio: 7.262044e-02	ci left: 9.137683e-04	ci right 9.829441e-04	k: 2910	n:3070000
Cons ci ratio: 1.360751e-03	ci left: 7.294655e-01	ci right 7.304591e-01	k: 2240985	n:3070000
KS ci ratio: 1.053846e-01	ci left: 4.267442e-04	ci right 4.745320e-04	k: 1382	n:3070000
RINL   3070000 perm   4158 sec   (738 perm/sec)   p_kst 4.501629e-04   p_cons 7.299625e-01   p_joint 9.478827e-04

Joint ci ratio: 7.257067e-02	ci left: 9.120766e-04	ci right 9.810750e-04	k: 2914	n:3080000
Cons ci ratio: 1.358523e-03	ci left: 7.294713e-01	ci right 7.304633e-01	k: 2248300	n:3080000
KS ci ratio: 1.052705e-01	ci left: 4.263070e-04	ci right 4.739910e-04	k: 1385	n:3080000
RINL   3080000 perm   4183 sec   (736 perm/sec)   p_kst 4.496753e-04   p_cons 7.299675e-01   p_joint 9.461039e-04

Joint ci ratio: 7.247130e-02	ci left: 9.116669e-04	ci right 9.805359e-04	k: 2922	n:3090000
Cons ci ratio: 1.356358e-03	ci left: 7.294619e-01	ci right 7.304523e-01	k: 2255568	n:3090000
KS ci ratio: 1.051568e-01	ci left: 4.258727e-04	ci right 4.734535e-04	k: 1388	n:3090000
RINL   3090000 perm   4209 sec   (734 perm/sec)   p_kst 4.491909e-04   p_cons 7.299573e-01   p_joint 9.456311e-04

Joint ci ratio: 7.234765e-02	ci left: 9.118935e-04	ci right 9.806571e-04	k: 2932	n:3100000
Cons ci ratio: 1.354233e-03	ci left: 7.294438e-01	ci right 7.304326e-01	k: 2262809	n:3100000
KS ci ratio: 1.049304e-01	ci left: 4.263836e-04	ci right 4.739125e-04	k: 1394	n:3100000
RINL   3100000 perm   4234 sec   (732 perm/sec)   p_kst 4.496774e-04   p_cons 7.299384e-01   p_joint 9.458065e-04

Joint ci ratio: 7.220007e-02	ci left: 9.127502e-04	ci right 9.814321e-04	k: 2944	n:3110000
Cons ci ratio: 1.352074e-03	ci left: 7.294390e-01	ci right 7.304262e-01	k: 2270091	n:3110000
KS ci ratio: 1.046680e-01	ci left: 4.272044e-04	ci right 4.746984e-04	k: 1401	n:3110000
RINL   3110000 perm   4260 sec   (730 perm/sec)   p_kst 4.504823e-04   p_cons 7.299328e-01   p_joint 9.466238e-04

Joint ci ratio: 7.210222e-02	ci left: 9.123425e-04	ci right 9.808968e-04	k: 2952	n:3120000
Cons ci ratio: 1.349821e-03	ci left: 7.294644e-01	ci right 7.304500e-01	k: 2277467	n:3120000
KS ci ratio: 1.045191e-01	ci left: 4.270837e-04	ci right 4.744925e-04	k: 1405	n:3120000
RINL   3120000 perm   4285 sec   (728 perm/sec)   p_kst 4.503205e-04   p_cons 7.299574e-01   p_joint 9.461538e-04

Joint ci ratio: 7.198044e-02	ci left: 9.125650e-04	ci right 9.810154e-04	k: 2962	n:3130000
Cons ci ratio: 1.347689e-03	ci left: 7.294576e-01	ci right 7.304417e-01	k: 2284743	n:3130000
KS ci ratio: 1.044077e-01	ci left: 4.266526e-04	ci right 4.739601e-04	k: 1408	n:3130000
RINL   3130000 perm   4310 sec   (726 perm/sec)   p_kst 4.498403e-04   p_cons 7.299498e-01   p_joint 9.463259e-04

Joint ci ratio: 7.187138e-02	ci left: 9.124734e-04	ci right 9.808090e-04	k: 2971	n:3140000
Cons ci ratio: 1.345536e-03	ci left: 7.294598e-01	ci right 7.304423e-01	k: 2292047	n:3140000
KS ci ratio: 1.042599e-01	ci left: 4.265345e-04	ci right 4.737578e-04	k: 1412	n:3140000
RINL   3140000 perm   4337 sec   (724 perm/sec)   p_kst 4.496815e-04   p_cons 7.299513e-01   p_joint 9.461783e-04

Joint ci ratio: 7.166662e-02	ci left: 9.148767e-04	ci right 9.831889e-04	k: 2988	n:3150000
Cons ci ratio: 1.343384e-03	ci left: 7.294649e-01	ci right 7.304458e-01	k: 2299360	n:3150000
KS ci ratio: 1.038563e-01	ci left: 4.285816e-04	ci right 4.758367e-04	k: 1423	n:3150000
RINL   3150000 perm   4362 sec   (722 perm/sec)   p_kst 4.517460e-04   p_cons 7.299556e-01   p_joint 9.485714e-04

Joint ci ratio: 7.157092e-02	ci left: 9.144678e-04	ci right 9.826545e-04	k: 2996	n:3160000
Cons ci ratio: 1.341171e-03	ci left: 7.294908e-01	ci right 7.304701e-01	k: 2306739	n:3160000
KS ci ratio: 1.036744e-01	ci left: 4.287665e-04	ci right 4.759542e-04	k: 1428	n:3160000
RINL   3160000 perm   4388 sec   (720 perm/sec)   p_kst 4.518987e-04   p_cons 7.299807e-01   p_joint 9.481013e-04

Joint ci ratio: 7.151134e-02	ci left: 9.131321e-04	ci right 9.811602e-04	k: 3001	n:3170000
Cons ci ratio: 1.339067e-03	ci left: 7.294879e-01	ci right 7.304657e-01	k: 2314027	n:3170000
KS ci ratio: 1.036382e-01	ci left: 4.277212e-04	ci right 4.747764e-04	k: 1429	n:3170000
RINL   3170000 perm   4414 sec   (718 perm/sec)   p_kst 4.507886e-04   p_cons 7.299770e-01   p_joint 9.466877e-04

Joint ci ratio: 7.142814e-02	ci left: 9.124226e-04	ci right 9.803154e-04	k: 3008	n:3180000
Cons ci ratio: 1.336991e-03	ci left: 7.294793e-01	ci right 7.304555e-01	k: 2321297	n:3180000
KS ci ratio: 1.034936e-01	ci left: 4.276015e-04	ci right 4.745738e-04	k: 1433	n:3180000
RINL   3180000 perm   4441 sec   (716 perm/sec)   p_kst 4.506289e-04   p_cons 7.299676e-01   p_joint 9.459119e-04

Joint ci ratio: 7.130974e-02	ci left: 9.126412e-04	ci right 9.804330e-04	k: 3018	n:3190000
Cons ci ratio: 1.334996e-03	ci left: 7.294500e-01	ci right 7.304248e-01	k: 2328501	n:3190000
KS ci ratio: 1.032777e-01	ci left: 4.280933e-04	ci right 4.750156e-04	k: 1439	n:3190000
RINL   3190000 perm   4473 sec   (713 perm/sec)   p_kst 4.510972e-04   p_cons 7.299376e-01   p_joint 9.460815e-04

Joint ci ratio: 7.113318e-02	ci left: 9.143932e-04	ci right 9.821401e-04	k: 3033	n:3200000
Cons ci ratio: 1.332893e-03	ci left: 7.294554e-01	ci right 7.304286e-01	k: 2335815	n:3200000
KS ci ratio: 1.030276e-01	ci left: 4.288866e-04	ci right 4.757751e-04	k: 1446	n:3200000
RINL   3200000 perm   4500 sec   (711 perm/sec)   p_kst 4.518750e-04   p_cons 7.299422e-01   p_joint 9.478125e-04

Joint ci ratio: 7.107469e-02	ci left: 9.130745e-04	ci right 9.806658e-04	k: 3038	n:3210000
Cons ci ratio: 1.330811e-03	ci left: 7.294572e-01	ci right 7.304289e-01	k: 2343118	n:3210000
KS ci ratio: 1.029565e-01	ci left: 4.281575e-04	ci right 4.749320e-04	k: 1448	n:3210000
RINL   3210000 perm   4526 sec   (709 perm/sec)   p_kst 4.510903e-04   p_cons 7.299433e-01   p_joint 9.464174e-04

Joint ci ratio: 7.089987e-02	ci left: 9.148146e-04	ci right 9.823613e-04	k: 3053	n:3220000
Cons ci ratio: 1.328810e-03	ci left: 7.294380e-01	ci right 7.304082e-01	k: 2350353	n:3220000
KS ci ratio: 1.026382e-01	ci left: 4.295510e-04	ci right 4.763240e-04	k: 1457	n:3220000
RINL   3220000 perm   4552 sec   (707 perm/sec)   p_kst 4.524845e-04   p_cons 7.299233e-01   p_joint 9.481366e-04

Joint ci ratio: 7.079564e-02	ci left: 9.147194e-04	ci right 9.821557e-04	k: 3062	n:3230000
Cons ci ratio: 1.326705e-03	ci left: 7.294526e-01	ci right 7.304213e-01	k: 2357697	n:3230000
KS ci ratio: 1.025328e-01	ci left: 4.291260e-04	ci right 4.758019e-04	k: 1460	n:3230000
RINL   3230000 perm   4579 sec   (705 perm/sec)   p_kst 4.520124e-04   p_cons 7.299372e-01   p_joint 9.479876e-04

Joint ci ratio: 7.070338e-02	ci left: 9.143216e-04	ci right 9.816371e-04	k: 3070	n:3240000
Cons ci ratio: 1.324684e-03	ci left: 7.294452e-01	ci right 7.304124e-01	k: 2364970	n:3240000
KS ci ratio: 1.023578e-01	ci left: 4.293053e-04	ci right 4.759161e-04	k: 1465	n:3240000
RINL   3240000 perm   4605 sec   (704 perm/sec)   p_kst 4.521605e-04   p_cons 7.299290e-01   p_joint 9.475309e-04

Joint ci ratio: 7.060001e-02	ci left: 9.142287e-04	ci right 9.814349e-04	k: 3079	n:3250000
Cons ci ratio: 1.322674e-03	ci left: 7.294369e-01	ci right 7.304027e-01	k: 2372240	n:3250000
KS ci ratio: 1.021836e-01	ci left: 4.294834e-04	ci right 4.760295e-04	k: 1470	n:3250000
RINL   3250000 perm   4632 sec   (702 perm/sec)   p_kst 4.523077e-04   p_cons 7.299200e-01   p_joint 9.473846e-04

Joint ci ratio: 7.047426e-02	ci left: 9.147390e-04	ci right 9.818580e-04	k: 3090	n:3260000
Cons ci ratio: 1.320699e-03	ci left: 7.294213e-01	ci right 7.303856e-01	k: 2379486	n:3260000
KS ci ratio: 1.019759e-01	ci left: 4.299595e-04	ci right 4.764568e-04	k: 1476	n:3260000
RINL   3260000 perm   4659 sec   (700 perm/sec)   p_kst 4.527607e-04   p_cons 7.299037e-01   p_joint 9.478528e-04

Joint ci ratio: 7.037189e-02	ci left: 9.146455e-04	ci right 9.816562e-04	k: 3099	n:3270000
Cons ci ratio: 1.318690e-03	ci left: 7.294184e-01	ci right 7.303812e-01	k: 2386773	n:3270000
KS ci ratio: 1.018725e-01	ci left: 4.295387e-04	ci right 4.759405e-04	k: 1479	n:3270000
RINL   3270000 perm   4685 sec   (698 perm/sec)   p_kst 4.522936e-04   p_cons 7.299000e-01   p_joint 9.477064e-04

Joint ci ratio: 7.024735e-02	ci left: 9.151516e-04	ci right 9.820759e-04	k: 3110	n:3280000
Cons ci ratio: 1.316671e-03	ci left: 7.294213e-01	ci right 7.303826e-01	k: 2394079	n:3280000
KS ci ratio: 1.016666e-01	ci left: 4.300118e-04	ci right 4.763653e-04	k: 1485	n:3280000
RINL   3280000 perm   4712 sec   (696 perm/sec)   p_kst 4.527439e-04   p_cons 7.299021e-01   p_joint 9.481707e-04

Joint ci ratio: 7.019101e-02	ci left: 9.138631e-04	ci right 9.806373e-04	k: 3115	n:3290000
Cons ci ratio: 1.314645e-03	ci left: 7.294290e-01	ci right 7.303888e-01	k: 2401401	n:3290000
KS ci ratio: 1.014960e-01	ci left: 4.301860e-04	ci right 4.764757e-04	k: 1490	n:3290000
RINL   3290000 perm   4739 sec   (694 perm/sec)   p_kst 4.528875e-04   p_cons 7.299091e-01   p_joint 9.468085e-04

Joint ci ratio: 7.008987e-02	ci left: 9.137732e-04	ci right 9.804408e-04	k: 3124	n:3300000
Cons ci ratio: 1.312642e-03	ci left: 7.294327e-01	ci right 7.303911e-01	k: 2408710	n:3300000
KS ci ratio: 1.013262e-01	ci left: 4.303591e-04	ci right 4.765854e-04	k: 1495	n:3300000
RINL   3300000 perm   4765 sec   (693 perm/sec)   p_kst 4.530303e-04   p_cons 7.299121e-01   p_joint 9.466667e-04

Joint ci ratio: 7.002272e-02	ci left: 9.127935e-04	ci right 9.793232e-04	k: 3130	n:3310000
Cons ci ratio: 1.310620e-03	ci left: 7.294449e-01	ci right 7.304018e-01	k: 2416047	n:3310000
KS ci ratio: 1.012586e-01	ci left: 4.296478e-04	ci right 4.757651e-04	k: 1497	n:3310000
RINL   3310000 perm   4791 sec   (691 perm/sec)   p_kst 4.522659e-04   p_cons 7.299236e-01   p_joint 9.456193e-04

Joint ci ratio: 6.992230e-02	ci left: 9.127075e-04	ci right 9.791317e-04	k: 3139	n:3320000
Cons ci ratio: 1.308659e-03	ci left: 7.294413e-01	ci right 7.303968e-01	k: 2423332	n:3320000
KS ci ratio: 1.011911e-01	ci left: 4.289409e-04	ci right 4.749498e-04	k: 1499	n:3320000
RINL   3320000 perm   4819 sec   (689 perm/sec)   p_kst 4.515060e-04   p_cons 7.299193e-01   p_joint 9.454819e-04

Joint ci ratio: 6.986674e-02	ci left: 9.114419e-04	ci right 9.777191e-04	k: 3144	n:3330000
Cons ci ratio: 1.306714e-03	ci left: 7.294354e-01	ci right 7.303894e-01	k: 2430609	n:3330000
KS ci ratio: 1.010228e-01	ci left: 4.291163e-04	ci right 4.750630e-04	k: 1504	n:3330000
RINL   3330000 perm   4847 sec   (687 perm/sec)   p_kst 4.516517e-04   p_cons 7.299126e-01   p_joint 9.441441e-04

Joint ci ratio: 6.976699e-02	ci left: 9.113606e-04	ci right 9.775335e-04	k: 3153	n:3340000
Cons ci ratio: 1.304756e-03	ci left: 7.294364e-01	ci right 7.303890e-01	k: 2437909	n:3340000
KS ci ratio: 1.008554e-01	ci left: 4.292907e-04	ci right 4.751754e-04	k: 1509	n:3340000
RINL   3340000 perm   4874 sec   (685 perm/sec)   p_kst 4.517964e-04   p_cons 7.299129e-01   p_joint 9.440120e-04

Joint ci ratio: 6.967870e-02	ci left: 9.109865e-04	ci right 9.770452e-04	k: 3161	n:3350000
Cons ci ratio: 1.302783e-03	ci left: 7.294442e-01	ci right 7.303954e-01	k: 2445232	n:3350000
KS ci ratio: 1.007221e-01	ci left: 4.291732e-04	ci right 4.749811e-04	k: 1513	n:3350000
RINL   3350000 perm   4902 sec   (683 perm/sec)   p_kst 4.516418e-04   p_cons 7.299200e-01   p_joint 9.435821e-04

Joint ci ratio: 6.957975e-02	ci left: 9.109072e-04	ci right 9.768625e-04	k: 3170	n:3360000
Cons ci ratio: 1.300842e-03	ci left: 7.294451e-01	ci right 7.303949e-01	k: 2452532	n:3360000
KS ci ratio: 1.005893e-01	ci left: 4.290564e-04	ci right 4.747879e-04	k: 1517	n:3360000
RINL   3360000 perm   4930 sec   (682 perm/sec)   p_kst 4.514881e-04   p_cons 7.299202e-01   p_joint 9.434524e-04

Joint ci ratio: 6.943752e-02	ci left: 9.119948e-04	ci right 9.778884e-04	k: 3183	n:3370000
Cons ci ratio: 1.298921e-03	ci left: 7.294428e-01	ci right 7.303912e-01	k: 2459821	n:3370000
KS ci ratio: 1.003911e-01	ci left: 4.295189e-04	ci right 4.752042e-04	k: 1523	n:3370000
RINL   3370000 perm   4959 sec   (680 perm/sec)   p_kst 4.519288e-04   p_cons 7.299172e-01   p_joint 9.445104e-04

Joint ci ratio: 6.931787e-02	ci left: 9.124945e-04	ci right 9.783061e-04	k: 3194	n:3380000
Cons ci ratio: 1.297046e-03	ci left: 7.294290e-01	ci right 7.303760e-01	k: 2467071	n:3380000
KS ci ratio: 1.001941e-01	ci left: 4.299788e-04	ci right 4.756179e-04	k: 1529	n:3380000
RINL   3380000 perm   4987 sec   (678 perm/sec)   p_kst 4.523669e-04   p_cons 7.299027e-01   p_joint 9.449704e-04

Joint ci ratio: 6.919884e-02	ci left: 9.129915e-04	ci right 9.787212e-04	k: 3205	n:3390000
Cons ci ratio: 1.295143e-03	ci left: 7.294261e-01	ci right 7.303717e-01	k: 2474358	n:3390000
KS ci ratio: 1.000634e-01	ci left: 4.298608e-04	ci right 4.754244e-04	k: 1533	n:3390000
RINL   3390000 perm   5015 sec   (676 perm/sec)   p_kst 4.522124e-04   p_cons 7.298991e-01   p_joint 9.454277e-04

Joint ci ratio: 6.908041e-02	ci left: 9.134856e-04	ci right 9.791339e-04	k: 3216	n:3400000
Cons ci ratio: 1.293241e-03	ci left: 7.294256e-01	ci right 7.303699e-01	k: 2481653	n:3400000
KS ci ratio: 9.983579e-02	ci left: 4.306039e-04	ci right 4.761363e-04	k: 1540	n:3400000
RINL   3400000 perm   5043 sec   (674 perm/sec)   p_kst 4.529412e-04   p_cons 7.298979e-01   p_joint 9.458824e-04

Outputting figure to mutsig2_images.part000000000147/RINL.2_1391_3400000_0.00045294_0.7299_0.00094588.png
                gene_name: RINL
               theta_stop: 0.100 
                    nperm: 3400000 
                     p_ks: 0.00045 
        ci_ks_bounds_left: 0.00043 
       ci_ks_bounds_right: 0.00048 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.00095 
     ci_joint_bounds_left: 0.00091 
    ci_joint_bounds_right: 0.00098 

Current progress: 77 percent done.
RIOK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.031728e-02	ci left: 3.680851e-01	ci right 3.871862e-01	k: 3776	n:10000
Cons ci ratio: 5.726153e-02	ci left: 3.098686e-01	ci right 3.282369e-01	k: 3190	n:10000
KS ci ratio: 4.128764e-02	ci left: 4.641722e-01	ci right 4.838429e-01	k: 4740	n:10000
RIOK1   10000 perm   2 sec   (6260 perm/sec)   p_kst 4.740000e-01   p_cons 3.190000e-01   p_joint 3.776000e-01

Outputting figure to mutsig2_images.part000000000147/RIOK1.2_1775_10000_0.474_0.319_0.3776.png
                gene_name: RIOK1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 79 percent done.
RIPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.676522e-02	ci left: 8.381638e-01	ci right 8.524344e-01	k: 8454	n:10000
Cons ci ratio: 3.060133e-02	ci left: 6.117087e-01	ci right 6.308206e-01	k: 6213	n:10000
KS ci ratio: 2.285498e-02	ci left: 7.376507e-01	ci right 7.548057e-01	k: 7463	n:10000
RIPK1   10000 perm   2 sec   (5594 perm/sec)   p_kst 7.463000e-01   p_cons 6.213000e-01   p_joint 8.454000e-01

Outputting figure to mutsig2_images.part000000000147/RIPK1.2_2056_10000_0.7463_0.6213_0.8454.png
                gene_name: RIPK1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 81 percent done.
RIPPLY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.996961e-01	ci left: 3.338573e-02	ci right 4.088702e-02	k: 370	n:10000
Cons ci ratio: 4.618961e-02	ci left: 4.089058e-01	ci right 4.283416e-01	k: 4186	n:10000
KS ci ratio: 2.554752e-01	ci left: 2.005779e-02	ci right 2.602453e-02	k: 229	n:10000
RIPPLY2   10000 perm   1 sec   (6932 perm/sec)   p_kst 2.290000e-02   p_cons 4.186000e-01   p_joint 3.700000e-02

Joint ci ratio: 1.512324e-01	ci left: 3.003745e-02	ci right 3.499968e-02	k: 649	n:20000
Cons ci ratio: 3.288303e-02	ci left: 4.085082e-01	ci right 4.222164e-01	k: 8307	n:20000
KS ci ratio: 1.837425e-01	ci left: 2.020279e-02	ci right 2.433773e-02	k: 444	n:20000
RIPPLY2   20000 perm   3 sec   (5909 perm/sec)   p_kst 2.220000e-02   p_cons 4.153500e-01   p_joint 3.245000e-02

Joint ci ratio: 7.976814e-02	ci left: 7.152057e-02	ci right 7.749548e-02	k: 2234	n:30000
Cons ci ratio: 2.679358e-02	ci left: 4.107801e-01	ci right 4.219694e-01	k: 12491	n:30000
KS ci ratio: 1.473941e-01	ci left: 2.133336e-02	ci right 2.475987e-02	k: 690	n:30000
RIPPLY2   30000 perm   5 sec   (5685 perm/sec)   p_kst 2.300000e-02   p_cons 4.163667e-01   p_joint 7.446667e-02

Joint ci ratio: 6.984413e-02	ci left: 7.044468e-02	ci right 7.556752e-02	k: 2919	n:40000
Cons ci ratio: 2.320269e-02	ci left: 4.115628e-01	ci right 4.212494e-01	k: 16656	n:40000
KS ci ratio: 1.272475e-01	ci left: 2.169850e-02	ci right 2.467128e-02	k: 926	n:40000
RIPPLY2   40000 perm   7 sec   (5511 perm/sec)   p_kst 2.315000e-02   p_cons 4.164000e-01   p_joint 7.297500e-02

Joint ci ratio: 6.285225e-02	ci left: 6.990686e-02	ci right 7.446296e-02	k: 3608	n:50000
Cons ci ratio: 2.080377e-02	ci left: 4.108959e-01	ci right 4.195540e-01	k: 20761	n:50000
KS ci ratio: 1.139524e-01	ci left: 2.180102e-02	ci right 2.445474e-02	k: 1155	n:50000
RIPPLY2   50000 perm   9 sec   (5313 perm/sec)   p_kst 2.310000e-02   p_cons 4.152200e-01   p_joint 7.216000e-02

Joint ci ratio: 5.718984e-02	ci left: 7.053615e-02	ci right 7.470530e-02	k: 4356	n:60000
Cons ci ratio: 1.907901e-02	ci left: 4.090396e-01	ci right 4.169355e-01	k: 24779	n:60000
KS ci ratio: 1.036119e-01	ci left: 2.209146e-02	ci right 2.452162e-02	k: 1397	n:60000
RIPPLY2   60000 perm   12 sec   (5204 perm/sec)   p_kst 2.328333e-02   p_cons 4.129833e-01   p_joint 7.260000e-02

Joint ci ratio: 5.104072e-02	ci left: 7.572728e-02	ci right 7.970780e-02	k: 5439	n:70000
Cons ci ratio: 1.761853e-02	ci left: 4.105760e-01	ci right 4.178883e-01	k: 28996	n:70000
KS ci ratio: 9.610723e-02	ci left: 2.209747e-02	ci right 2.434229e-02	k: 1624	n:70000
RIPPLY2   70000 perm   14 sec   (4842 perm/sec)   p_kst 2.320000e-02   p_cons 4.142286e-01   p_joint 7.770000e-02

Outputting figure to mutsig2_images.part000000000147/RIPPLY2.2_403_70000_0.0232_0.41423_0.0777.png
                gene_name: RIPPLY2
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.080 

Current progress: 83 percent done.
RIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.372829e-02	ci left: 8.845229e-01	ci right 8.968485e-01	k: 8908	n:10000
KS ci ratio: 1.510206e-02	ci left: 8.640678e-01	ci right 8.773155e-01	k: 8708	n:10000
RIT1   10000 perm   1 sec   (6833 perm/sec)   p_kst 8.708000e-01   p_cons 8.908000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RIT1.2_680_10000_0.8708_0.8908_1.png
                gene_name: RIT1
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
RIT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.129592e-02	ci left: 4.640723e-01	ci right 4.837429e-01	k: 4739	n:10000
Cons ci ratio: 1.278569e-02	ci left: 8.979552e-01	ci right 9.096083e-01	k: 9039	n:10000
KS ci ratio: 8.978231e-02	ci left: 1.528644e-01	ci right 1.673342e-01	k: 1600	n:10000
RIT2   10000 perm   1 sec   (6900 perm/sec)   p_kst 1.600000e-01   p_cons 9.039000e-01   p_joint 4.739000e-01

Outputting figure to mutsig2_images.part000000000147/RIT2.2_674_10000_0.16_0.9039_0.4739.png
                gene_name: RIT2
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 87 percent done.
RLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.836104e-02	ci left: 8.124288e-01	ci right 8.275843e-01	k: 8201	n:10000
KS ci ratio: 2.687682e-02	ci left: 6.709573e-01	ci right 6.893377e-01	k: 6802	n:10000
RLN2   10000 perm   1 sec   (6841 perm/sec)   p_kst 6.802000e-01   p_cons 8.201000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000147/RLN2.2_671_10000_0.6802_0.8201_1.png
                gene_name: RLN2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
RLTPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.041386e-01	ci left: 1.176005e-01	ci right 1.306194e-01	k: 1240	n:10000
Cons ci ratio: 1.100425e-01	ci left: 1.063704e-01	ci right 1.188563e-01	k: 1125	n:10000
KS ci ratio: 6.109811e-02	ci left: 2.826046e-01	ci right 3.005169e-01	k: 2915	n:10000
RLTPR   10000 perm   2 sec   (5161 perm/sec)   p_kst 2.915000e-01   p_cons 1.125000e-01   p_joint 1.240000e-01

Joint ci ratio: 7.498993e-02	ci left: 1.156744e-01	ci right 1.247364e-01	k: 2403	n:20000
Cons ci ratio: 7.916654e-02	ci left: 1.048604e-01	ci right 1.135536e-01	k: 2183	n:20000
KS ci ratio: 4.338152e-02	ci left: 2.835682e-01	ci right 2.961930e-01	k: 5797	n:20000
RLTPR   20000 perm   4 sec   (4669 perm/sec)   p_kst 2.898500e-01   p_cons 1.091500e-01   p_joint 1.201500e-01

Outputting figure to mutsig2_images.part000000000147/RLTPR.2_4460_20000_0.28985_0.10915_0.12015.png
                gene_name: RLTPR
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 90 percent done.
RNASE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.158024e-01	ci left: 9.681653e-02	ci right 1.088160e-01	k: 1027	n:10000
Cons ci ratio: 1.478182e-01	ci left: 6.082454e-02	ci right 7.063030e-02	k: 656	n:10000
KS ci ratio: 5.290849e-03	ci left: 9.794135e-01	ci right 9.847004e-01	k: 9822	n:10000
RNASE2   10000 perm   1 sec   (7220 perm/sec)   p_kst 9.822000e-01   p_cons 6.560000e-02   p_joint 1.027000e-01

Joint ci ratio: 5.573271e-02	ci left: 1.927438e-01	ci right 2.038440e-01	k: 3965	n:20000
Cons ci ratio: 9.457581e-02	ci left: 7.534699e-02	ci right 8.287592e-02	k: 1581	n:20000
KS ci ratio: 3.644720e-03	ci left: 9.811641e-01	ci right 9.847935e-01	k: 19661	n:20000
RNASE2   20000 perm   3 sec   (6295 perm/sec)   p_kst 9.830500e-01   p_cons 7.905000e-02   p_joint 1.982500e-01

Outputting figure to mutsig2_images.part000000000147/RNASE2.2_490_20000_0.98305_0.07905_0.19825.png
                gene_name: RNASE2
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 92 percent done.
RNASE7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.916568e-02	ci left: 1.890467e-01	ci right 2.047302e-01	k: 1968	n:10000
Cons ci ratio: 5.311696e-02	ci left: 3.431304e-01	ci right 3.619556e-01	k: 3525	n:10000
KS ci ratio: 1.189212e-01	ci left: 9.214310e-02	ci right 1.038923e-01	k: 979	n:10000
RNASE7   10000 perm   1 sec   (6909 perm/sec)   p_kst 9.790000e-02   p_cons 3.525000e-01   p_joint 1.968000e-01

Joint ci ratio: 4.976171e-02	ci left: 2.308723e-01	ci right 2.427043e-01	k: 4735	n:20000
Cons ci ratio: 3.772852e-02	ci left: 3.438846e-01	ci right 3.571589e-01	k: 7010	n:20000
KS ci ratio: 8.376039e-02	ci left: 9.455091e-02	ci right 1.028662e-01	k: 1973	n:20000
RNASE7   20000 perm   3 sec   (6068 perm/sec)   p_kst 9.865000e-02   p_cons 3.505000e-01   p_joint 2.367500e-01

Outputting figure to mutsig2_images.part000000000147/RNASE7.2_475_20000_0.09865_0.3505_0.23675.png
                gene_name: RNASE7
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 94 percent done.
RNASE9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.019312e-02	ci left: 6.180386e-01	ci right 6.370870e-01	k: 6276	n:10000
Cons ci ratio: 1.650805e-02	ci left: 8.422384e-01	ci right 8.563575e-01	k: 8494	n:10000
KS ci ratio: 8.472899e-02	ci left: 1.687778e-01	ci right 1.838112e-01	k: 1762	n:10000
RNASE9   10000 perm   2 sec   (6578 perm/sec)   p_kst 1.762000e-01   p_cons 8.494000e-01   p_joint 6.276000e-01

Outputting figure to mutsig2_images.part000000000147/RNASE9.2_646_10000_0.1762_0.8494_0.6276.png
                gene_name: RNASE9
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 96 percent done.
RNASEH2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.690767e-02	ci left: 3.125475e-01	ci right 3.309565e-01	k: 3217	n:10000
Cons ci ratio: 6.285915e-02	ci left: 2.711159e-01	ci right 2.888125e-01	k: 2799	n:10000
KS ci ratio: 9.965007e-02	ci left: 1.272828e-01	ci right 1.407312e-01	k: 1339	n:10000
RNASEH2A   10000 perm   1 sec   (7073 perm/sec)   p_kst 1.339000e-01   p_cons 2.799000e-01   p_joint 3.217000e-01

Outputting figure to mutsig2_images.part000000000147/RNASEH2A.2_932_10000_0.1339_0.2799_0.3217.png
                gene_name: RNASEH2A
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 98 percent done.
RND3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.884244e-02	ci left: 1.291424e-01	ci right 1.426705e-01	k: 1358	n:10000
Cons ci ratio: 7.031466e-02	ci left: 2.286929e-01	ci right 2.454605e-01	k: 2370	n:10000
KS ci ratio: 1.110452e-01	ci left: 1.046144e-01	ci right 1.170133e-01	k: 1107	n:10000
RND3   10000 perm   1 sec   (6761 perm/sec)   p_kst 1.107000e-01   p_cons 2.370000e-01   p_joint 1.358000e-01

Joint ci ratio: 6.887046e-02	ci left: 1.345781e-01	ci right 1.442270e-01	k: 2787	n:20000
Cons ci ratio: 4.986518e-02	ci left: 2.301288e-01	ci right 2.419480e-01	k: 4720	n:20000
KS ci ratio: 7.742634e-02	ci left: 1.091844e-01	ci right 1.180283e-01	k: 2271	n:20000
RND3   20000 perm   4 sec   (5632 perm/sec)   p_kst 1.135500e-01   p_cons 2.360000e-01   p_joint 1.393500e-01

Outputting figure to mutsig2_images.part000000000147/RND3.2_755_20000_0.11355_0.236_0.13935.png
                gene_name: RND3
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000147
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 147 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1654>
Subject: Job 9894115: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1654>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000148> was used as the working directory.
Started at Sat Oct  6 00:27:32 2012
Results reported at Sat Oct  6 00:47:10 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000148.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000148.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 148  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000148.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1213.99 sec.
    Max Memory :      3608 MB
    Max Swap   :      5929 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
148
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 148
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 148: processing genes 13253 - 13342
Calculating significance of each gene.
Using projection method.
13253	RNF113A	8.542403e-01
13254	RNF113B	5.153902e-01
13255	RNF114	1
13256	RNF115	6.652482e-01
13257	RNF121	6.016790e-01
13258	RNF122	1.434444e-01
13259	RNF123	9.091500e-01
13260	RNF125	1
13261	RNF126	1
13262	RNF128	1
13263	RNF13	1
13264	RNF130	1.231595e-01
13265	RNF133	2.056257e-01
13266	RNF135	2.986970e-01
13267	RNF138	5.129946e-01
13268	RNF139	2.920668e-01
13269	RNF14	5.642022e-01
13270	RNF141	2.320786e-01
13271	RNF144A	7.893792e-01
13272	RNF144B	5.621468e-01
13273	RNF145	8.282913e-01
13274	RNF146	5.639248e-01
13275	RNF148	2.987151e-02
13276	RNF149	5.713640e-01
13277	RNF150	1.105882e-01
13278	RNF151	1
13279	RNF152	1.744735e-01
13280	RNF157	3.942312e-01
13281	RNF160	9.979381e-01
13282	RNF165	3.165127e-01
13283	RNF166	1
13284	RNF167	4.754206e-01
13285	RNF168	3.447426e-02
13286	RNF169	6.993569e-02
13287	RNF17	2.312455e-02
13288	RNF170	5.498827e-01
13289	RNF175	2.577763e-02
13290	RNF180	2.074376e-01
13291	RNF181	1
13292	RNF182	6.528692e-02
13293	RNF183	1
13294	RNF185	5.045990e-01
13295	RNF186	1
13296	RNF19A	7.894521e-01
13297	RNF19B	2.129416e-01
13298	RNF2	1.057509e-01
In gene RNF20 the following bins exceed PROBCAP:
    COAD-AA-A01I	categ 6	N = 3004    n = 1	mu =   3.29e-07
13299	RNF20	1.161233e-01
13300	RNF207	9.282054e-01
13301	RNF212	2.632603e-01
13302	RNF213	9.462938e-01
13303	RNF214	5.827725e-01
13304	RNF215	1
13305	RNF216	9.775505e-01
13306	RNF217	9.062689e-02
13307	RNF219	6.150657e-02
13308	RNF220	9.215313e-01
13309	RNF24	3.739948e-01
13310	RNF25	2.017490e-01
13311	RNF26	1
13312	RNF31	9.570913e-01
13313	RNF32	5.542294e-01
13314	RNF34	7.011095e-01
13315	RNF38	9.271930e-01
13316	RNF39	7.772312e-01
13317	RNF4	1
13318	RNF40	6.741218e-01
13319	RNF41	6.682461e-01
13320	RNF43	2.581753e-03
13321	RNF44	1
13322	RNF5	1
13323	RNF6	1.058596e-01
13324	RNF7	1
13325	RNF8	8.558986e-01
13326	RNFT1	4.893653e-01
13327	RNFT2	4.411625e-01
13328	RNGTT	1.338956e-01
In gene RNH1 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 1360    n = 1	mu =   8.55e-07
13329	RNH1	5.039336e-01
13330	RNLS	1
13331	RNMT	1.551135e-01
13332	RNMTL1	1
13333	RNPC3	1
13334	RNPEP	1.682284e-01
13335	RNPEPL1	1
13336	RNPS1	5.506982e-01
13337	ROBLD3	6.095550e-01
13338	ROBO1	3.806457e-04
13339	ROBO2	1.560291e-02
13340	ROBO3	9.208342e-01
13341	ROBO4	5.779980e-01
13342	ROCK1	3.376453e-02
Done

Running MutSig 2:
Scatter job 148: processing genes 13253 - 13342
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ROBO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.019367e-02	ci left: 2.887481e-01	ci right 3.067699e-01	k: 2977	n:10000
Cons ci ratio: 1.878267e-02	ci left: 8.055218e-01	ci right 8.208953e-01	k: 8133	n:10000
KS ci ratio: 7.750296e-02	ci left: 1.957449e-01	ci right 2.116281e-01	k: 2036	n:10000
ROBO1   10000 perm   2 sec   (4055 perm/sec)   p_kst 2.036000e-01   p_cons 8.133000e-01   p_joint 2.977000e-01

Outputting figure to mutsig2_images.part000000000148/ROBO1.24_5148_10000_0.2036_0.8133_0.2977.png
                gene_name: ROBO1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 2 percent done.
ROBO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.489076e-01	ci left: 2.118344e-02	ci right 2.729802e-02	k: 241	n:10000
Cons ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
KS ci ratio: 2.982611e-02	ci left: 6.237671e-01	ci right 6.427552e-01	k: 6333	n:10000
ROBO2   10000 perm   2 sec   (4132 perm/sec)   p_kst 6.333000e-01   p_cons 9.200000e-03   p_joint 2.410000e-02

Joint ci ratio: 1.142358e-01	ci left: 5.241537e-02	ci right 5.881460e-02	k: 1111	n:20000
Cons ci ratio: 2.473661e-01	ci left: 1.086559e-02	ci right 1.397857e-02	k: 247	n:20000
KS ci ratio: 2.152009e-02	ci left: 6.171440e-01	ci right 6.306200e-01	k: 12478	n:20000
ROBO2   20000 perm   5 sec   (3792 perm/sec)   p_kst 6.239000e-01   p_cons 1.235000e-02   p_joint 5.555000e-02

Joint ci ratio: 9.500496e-02	ci left: 5.114319e-02	ci right 5.627700e-02	k: 1610	n:30000
Cons ci ratio: 1.995451e-01	ci left: 1.143190e-02	ci right 1.399710e-02	k: 380	n:30000
KS ci ratio: 1.757137e-02	ci left: 6.183901e-01	ci right 6.293859e-01	k: 18717	n:30000
ROBO2   30000 perm   8 sec   (3652 perm/sec)   p_kst 6.239000e-01   p_cons 1.266667e-02   p_joint 5.366667e-02

Joint ci ratio: 8.316032e-02	ci left: 5.043239e-02	ci right 5.483284e-02	k: 2104	n:40000
Cons ci ratio: 1.735050e-01	ci left: 1.150599e-02	ci right 1.371561e-02	k: 503	n:40000
KS ci ratio: 1.519387e-02	ci left: 6.198583e-01	ci right 6.293736e-01	k: 24985	n:40000
ROBO2   40000 perm   11 sec   (3564 perm/sec)   p_kst 6.246250e-01   p_cons 1.257500e-02   p_joint 5.260000e-02

Joint ci ratio: 6.779174e-02	ci left: 6.055118e-02	ci right 6.481977e-02	k: 3133	n:50000
Cons ci ratio: 1.531093e-01	ci left: 1.194850e-02	ci right 1.394864e-02	k: 646	n:50000
KS ci ratio: 1.274702e-02	ci left: 6.499520e-01	ci right 6.583101e-01	k: 32707	n:50000
ROBO2   50000 perm   14 sec   (3501 perm/sec)   p_kst 6.541400e-01   p_cons 1.292000e-02   p_joint 6.266000e-02

Joint ci ratio: 5.843584e-02	ci left: 6.772432e-02	ci right 7.181741e-02	k: 4185	n:60000
Cons ci ratio: 1.381028e-01	ci left: 1.233425e-02	ci right 1.417994e-02	k: 794	n:60000
KS ci ratio: 1.164731e-02	ci left: 6.498940e-01	ci right 6.575245e-01	k: 39223	n:60000
ROBO2   60000 perm   17 sec   (3443 perm/sec)   p_kst 6.537167e-01   p_cons 1.323333e-02   p_joint 6.975000e-02

Joint ci ratio: 4.625404e-02	ci left: 9.090065e-02	ci right 9.521886e-02	k: 6513	n:70000
Cons ci ratio: 1.174221e-01	ci left: 1.475046e-02	ci right 1.660429e-02	k: 1096	n:70000
KS ci ratio: 1.076638e-02	ci left: 6.508922e-01	ci right 6.579521e-01	k: 45810	n:70000
ROBO2   70000 perm   21 sec   (3379 perm/sec)   p_kst 6.544286e-01   p_cons 1.565714e-02   p_joint 9.304286e-02

Joint ci ratio: 4.433050e-02	ci left: 8.706029e-02	ci right 9.101957e-02	k: 7122	n:80000
Cons ci ratio: 1.090334e-01	ci left: 1.503237e-02	ci right 1.677799e-02	k: 1271	n:80000
KS ci ratio: 1.007697e-02	ci left: 6.508547e-01	ci right 6.574591e-01	k: 52333	n:80000
ROBO2   80000 perm   24 sec   (3338 perm/sec)   p_kst 6.541625e-01   p_cons 1.588750e-02   p_joint 8.902500e-02

Joint ci ratio: 4.191700e-02	ci left: 8.670719e-02	ci right 9.043049e-02	k: 7970	n:90000
Cons ci ratio: 1.026157e-01	ci left: 1.513616e-02	ci right 1.678414e-02	k: 1435	n:90000
KS ci ratio: 9.509913e-03	ci left: 6.506034e-01	ci right 6.568312e-01	k: 58835	n:90000
ROBO2   90000 perm   27 sec   (3298 perm/sec)   p_kst 6.537222e-01   p_cons 1.594444e-02   p_joint 8.855556e-02

Joint ci ratio: 3.862058e-02	ci left: 9.159334e-02	ci right 9.521028e-02	k: 9339	n:100000
Cons ci ratio: 9.654005e-02	ci left: 1.543636e-02	ci right 1.701188e-02	k: 1621	n:100000
KS ci ratio: 9.033508e-03	ci left: 6.501805e-01	ci right 6.560906e-01	k: 65314	n:100000
ROBO2   100000 perm   31 sec   (3260 perm/sec)   p_kst 6.531400e-01   p_cons 1.621000e-02   p_joint 9.339000e-02

Outputting figure to mutsig2_images.part000000000148/ROBO2.18_4243_100000_0.65314_0.01621_0.09339.png
                gene_name: ROBO2
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.095 

Current progress: 4 percent done.
RNF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.511523e-02	ci left: 4.203680e-01	ci right 4.398728e-01	k: 4301	n:10000
Cons ci ratio: 3.607332e-02	ci left: 5.315730e-01	ci right 5.512029e-01	k: 5414	n:10000
KS ci ratio: 5.870215e-02	ci left: 2.992559e-01	ci right 3.174558e-01	k: 3083	n:10000
RNF17   10000 perm   2 sec   (4136 perm/sec)   p_kst 3.083000e-01   p_cons 5.414000e-01   p_joint 4.301000e-01

Outputting figure to mutsig2_images.part000000000148/RNF17.17_5012_10000_0.3083_0.5414_0.4301.png
                gene_name: RNF17
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 6 percent done.
RNF213
Processing conservation and coverage...
61% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.046152e-01	ci left: 3.176903e-02	ci right 3.910482e-02	k: 353	n:10000
Cons ci ratio: 7.593756e-02	ci left: 2.023480e-01	ci right 2.184211e-01	k: 2103	n:10000
KS ci ratio: 5.003467e-01	ci left: 4.581663e-03	ci right 7.716529e-03	k: 60	n:10000
RNF213   10000 perm   4 sec   (2753 perm/sec)   p_kst 6.000000e-03   p_cons 2.103000e-01   p_joint 3.530000e-02

Joint ci ratio: 2.289106e-01	ci left: 1.279482e-02	ci right 1.614852e-02	k: 288	n:20000
Cons ci ratio: 5.101892e-02	ci left: 2.220518e-01	ci right 2.337274e-01	k: 4557	n:20000
KS ci ratio: 3.644804e-01	ci left: 4.704030e-03	ci right 6.843509e-03	k: 114	n:20000
RNF213   20000 perm   8 sec   (2565 perm/sec)   p_kst 5.700000e-03   p_cons 2.278500e-01   p_joint 1.440000e-02

Joint ci ratio: 1.570918e-01	ci left: 1.873410e-02	ci right 2.195973e-02	k: 609	n:30000
Cons ci ratio: 4.353768e-02	ci left: 2.080807e-01	ci right 2.173750e-01	k: 6381	n:30000
KS ci ratio: 2.980342e-01	ci left: 4.879595e-03	ci right 6.618225e-03	k: 171	n:30000
RNF213   30000 perm   12 sec   (2494 perm/sec)   p_kst 5.700000e-03   p_cons 2.127000e-01   p_joint 2.030000e-02

Joint ci ratio: 1.311378e-01	ci left: 2.041542e-02	ci right 2.330457e-02	k: 873	n:40000
Cons ci ratio: 3.794660e-02	ci left: 2.065881e-01	ci right 2.146040e-01	k: 8423	n:40000
KS ci ratio: 2.544133e-01	ci left: 5.149620e-03	ci right 6.673453e-03	k: 235	n:40000
RNF213   40000 perm   16 sec   (2446 perm/sec)   p_kst 5.875000e-03   p_cons 2.105750e-01   p_joint 2.182500e-02

Joint ci ratio: 1.586677e-01	ci left: 1.110244e-02	ci right 1.303483e-02	k: 602	n:50000
Cons ci ratio: 3.430608e-02	ci left: 2.034956e-01	ci right 2.106185e-01	k: 10352	n:50000
KS ci ratio: 2.319454e-01	ci left: 5.021268e-03	ci right 6.357106e-03	k: 283	n:50000
RNF213   50000 perm   21 sec   (2410 perm/sec)   p_kst 5.660000e-03   p_cons 2.070400e-01   p_joint 1.204000e-02

Joint ci ratio: 1.519760e-01	ci left: 1.013269e-02	ci right 1.181512e-02	k: 657	n:60000
Cons ci ratio: 3.015074e-02	ci left: 2.164752e-01	ci right 2.231186e-01	k: 13187	n:60000
KS ci ratio: 2.107438e-01	ci left: 5.129090e-03	ci right 6.352797e-03	k: 343	n:60000
RNF213   60000 perm   25 sec   (2381 perm/sec)   p_kst 5.716667e-03   p_cons 2.197833e-01   p_joint 1.095000e-02

Joint ci ratio: 1.251185e-01	ci left: 1.296269e-02	ci right 1.470653e-02	k: 967	n:70000
Cons ci ratio: 2.783997e-02	ci left: 2.176323e-01	ci right 2.237909e-01	k: 15449	n:70000
KS ci ratio: 1.964280e-01	ci left: 5.101380e-03	ci right 6.225907e-03	k: 395	n:70000
RNF213   70000 perm   30 sec   (2354 perm/sec)   p_kst 5.642857e-03   p_cons 2.207000e-01   p_joint 1.381429e-02

Joint ci ratio: 1.240658e-01	ci left: 1.155981e-02	ci right 1.310086e-02	k: 985	n:80000
Cons ci ratio: 2.602409e-02	ci left: 2.180665e-01	ci right 2.238287e-01	k: 17675	n:80000
KS ci ratio: 1.865762e-01	ci left: 4.975419e-03	ci right 6.010940e-03	k: 438	n:80000
RNF213   80000 perm   34 sec   (2328 perm/sec)   p_kst 5.475000e-03   p_cons 2.209375e-01   p_joint 1.231250e-02

Joint ci ratio: 1.321026e-01	ci left: 9.048472e-03	ci right 1.033898e-02	k: 871	n:90000
Cons ci ratio: 2.451953e-02	ci left: 2.184586e-01	ci right 2.238927e-01	k: 19905	n:90000
KS ci ratio: 1.766038e-01	ci left: 4.963514e-03	ci right 5.935447e-03	k: 489	n:90000
RNF213   90000 perm   39 sec   (2305 perm/sec)   p_kst 5.433333e-03   p_cons 2.211667e-01   p_joint 9.677778e-03

Joint ci ratio: 1.086486e-01	ci left: 1.215137e-02	ci right 1.355710e-02	k: 1284	n:100000
Cons ci ratio: 2.403288e-02	ci left: 2.076084e-01	ci right 2.126684e-01	k: 21013	n:100000
KS ci ratio: 1.687048e-01	ci left: 4.916849e-03	ci right 5.832201e-03	k: 536	n:100000
RNF213   100000 perm   44 sec   (2282 perm/sec)   p_kst 5.360000e-03   p_cons 2.101300e-01   p_joint 1.284000e-02

Joint ci ratio: 9.899331e-02	ci left: 1.335832e-02	ci right 1.475838e-02	k: 1545	n:110000
Cons ci ratio: 2.292412e-02	ci left: 2.075871e-01	ci right 2.124100e-01	k: 23099	n:110000
KS ci ratio: 1.610870e-01	ci left: 4.923090e-03	ci right 5.794212e-03	k: 588	n:110000
RNF213   110000 perm   49 sec   (2261 perm/sec)   p_kst 5.345455e-03   p_cons 2.099909e-01   p_joint 1.404545e-02

Joint ci ratio: 9.146746e-02	ci left: 1.438500e-02	ci right 1.577191e-02	k: 1808	n:120000
Cons ci ratio: 2.217335e-02	ci left: 2.043371e-01	ci right 2.089270e-01	k: 24795	n:120000
KS ci ratio: 1.553939e-01	ci left: 4.864970e-03	ci right 5.692549e-03	k: 632	n:120000
RNF213   120000 perm   54 sec   (2239 perm/sec)   p_kst 5.266667e-03   p_cons 2.066250e-01   p_joint 1.506667e-02

Joint ci ratio: 9.779773e-02	ci left: 1.161031e-02	ci right 1.281160e-02	k: 1586	n:130000
Cons ci ratio: 2.131314e-02	ci left: 2.042793e-01	ci right 2.086877e-01	k: 26842	n:130000
KS ci ratio: 1.501530e-01	ci left: 4.823657e-03	ci right 5.614046e-03	k: 677	n:130000
RNF213   130000 perm   59 sec   (2219 perm/sec)   p_kst 5.207692e-03   p_cons 2.064769e-01   p_joint 1.220000e-02

Joint ci ratio: 9.784092e-02	ci left: 1.078077e-02	ci right 1.189675e-02	k: 1586	n:140000
Cons ci ratio: 2.053018e-02	ci left: 2.044817e-01	ci right 2.087304e-01	k: 28924	n:140000
KS ci ratio: 1.444085e-01	ci left: 4.857499e-03	ci right 5.620357e-03	k: 732	n:140000
RNF213   140000 perm   64 sec   (2199 perm/sec)   p_kst 5.228571e-03   p_cons 2.066000e-01   p_joint 1.132857e-02

Joint ci ratio: 9.588308e-02	ci left: 1.049132e-02	ci right 1.155438e-02	k: 1652	n:150000
Cons ci ratio: 1.982399e-02	ci left: 2.047195e-01	ci right 2.088251e-01	k: 31015	n:150000
KS ci ratio: 1.405370e-01	ci left: 4.797245e-03	ci right 5.528750e-03	k: 773	n:150000
RNF213   150000 perm   69 sec   (2180 perm/sec)   p_kst 5.153333e-03   p_cons 2.067667e-01   p_joint 1.101333e-02

Joint ci ratio: 9.641871e-02	ci left: 9.731731e-03	ci right 1.072364e-02	k: 1635	n:160000
Cons ci ratio: 1.922958e-02	ci left: 2.041887e-01	ci right 2.081595e-01	k: 32987	n:160000
KS ci ratio: 1.361242e-01	ci left: 4.805138e-03	ci right 5.512975e-03	k: 824	n:160000
RNF213   160000 perm   74 sec   (2162 perm/sec)   p_kst 5.150000e-03   p_cons 2.061688e-01   p_joint 1.021875e-02

Joint ci ratio: 9.351953e-02	ci left: 9.750773e-03	ci right 1.071310e-02	k: 1738	n:170000
Cons ci ratio: 1.865435e-02	ci left: 2.042672e-01	ci right 2.081193e-01	k: 35052	n:170000
KS ci ratio: 1.321025e-01	ci left: 4.812420e-03	ci right 5.498740e-03	k: 875	n:170000
RNF213   170000 perm   80 sec   (2136 perm/sec)   p_kst 5.147059e-03   p_cons 2.061882e-01   p_joint 1.022353e-02

Joint ci ratio: 9.662318e-02	ci left: 8.623082e-03	ci right 9.503950e-03	k: 1630	n:180000
Cons ci ratio: 1.811983e-02	ci left: 2.044824e-01	ci right 2.082270e-01	k: 37143	n:180000
KS ci ratio: 1.285569e-01	ci left: 4.808409e-03	ci right 5.474348e-03	k: 924	n:180000
RNF213   180000 perm   85 sec   (2116 perm/sec)   p_kst 5.133333e-03   p_cons 2.063500e-01   p_joint 9.055556e-03

Joint ci ratio: 8.712507e-02	ci left: 1.008257e-02	ci right 1.100614e-02	k: 2002	n:190000
Cons ci ratio: 1.764436e-02	ci left: 2.043879e-01	ci right 2.080315e-01	k: 39179	n:190000
KS ci ratio: 1.261311e-01	ci left: 4.738762e-03	ci right 5.381745e-03	k: 960	n:190000
RNF213   190000 perm   90 sec   (2102 perm/sec)   p_kst 5.052632e-03   p_cons 2.062053e-01   p_joint 1.053684e-02

Joint ci ratio: 8.712632e-02	ci left: 9.583225e-03	ci right 1.046106e-02	k: 2003	n:200000
Cons ci ratio: 1.719001e-02	ci left: 2.045782e-01	ci right 2.081303e-01	k: 41270	n:200000
KS ci ratio: 1.226076e-01	ci left: 4.773119e-03	ci right 5.401358e-03	k: 1016	n:200000
RNF213   200000 perm   96 sec   (2088 perm/sec)   p_kst 5.080000e-03   p_cons 2.063500e-01   p_joint 1.001500e-02

Joint ci ratio: 8.847176e-02	ci left: 8.851949e-03	ci right 9.675968e-03	k: 1944	n:210000
Cons ci ratio: 1.677465e-02	ci left: 2.046422e-01	ci right 2.081088e-01	k: 43338	n:210000
KS ci ratio: 1.194758e-01	ci left: 4.795188e-03	ci right 5.409071e-03	k: 1070	n:210000
RNF213   210000 perm   101 sec   (2074 perm/sec)   p_kst 5.095238e-03   p_cons 2.063714e-01   p_joint 9.257143e-03

Joint ci ratio: 7.339582e-02	ci left: 1.232997e-02	ci right 1.327384e-02	k: 2815	n:220000
Cons ci ratio: 1.655400e-02	ci left: 2.014296e-01	ci right 2.047964e-01	k: 44684	n:220000
KS ci ratio: 1.173083e-01	ci left: 4.753652e-03	ci right 5.350412e-03	k: 1110	n:220000
RNF213   220000 perm   107 sec   (2059 perm/sec)   p_kst 5.045455e-03   p_cons 2.031091e-01   p_joint 1.279545e-02

Joint ci ratio: 7.773715e-02	ci left: 1.050950e-02	ci right 1.136376e-02	k: 2514	n:230000
Cons ci ratio: 1.619821e-02	ci left: 2.013057e-01	ci right 2.045974e-01	k: 46678	n:230000
KS ci ratio: 1.150538e-01	ci left: 4.732714e-03	ci right 5.314650e-03	k: 1154	n:230000
RNF213   230000 perm   112 sec   (2045 perm/sec)   p_kst 5.017391e-03   p_cons 2.029478e-01   p_joint 1.093043e-02

Joint ci ratio: 7.100049e-02	ci left: 1.209616e-02	ci right 1.299067e-02	k: 3009	n:240000
Cons ci ratio: 1.586605e-02	ci left: 2.011596e-01	ci right 2.043809e-01	k: 48664	n:240000
KS ci ratio: 1.127356e-01	ci left: 4.729819e-03	ci right 5.298903e-03	k: 1202	n:240000
RNF213   240000 perm   118 sec   (2032 perm/sec)   p_kst 5.008333e-03   p_cons 2.027667e-01   p_joint 1.253750e-02

Joint ci ratio: 6.415950e-02	ci left: 1.423975e-02	ci right 1.518755e-02	k: 3677	n:250000
Cons ci ratio: 1.553698e-02	ci left: 2.013689e-01	ci right 2.045260e-01	k: 50736	n:250000
KS ci ratio: 1.096745e-01	ci left: 4.805072e-03	ci right 5.366497e-03	k: 1270	n:250000
RNF213   250000 perm   124 sec   (2017 perm/sec)   p_kst 5.080000e-03   p_cons 2.029440e-01   p_joint 1.470800e-02

Joint ci ratio: 6.550958e-02	ci left: 1.313938e-02	ci right 1.403305e-02	k: 3531	n:260000
Cons ci ratio: 1.523915e-02	ci left: 2.013172e-01	ci right 2.044125e-01	k: 52744	n:260000
KS ci ratio: 1.074565e-01	ci left: 4.818574e-03	ci right 5.369470e-03	k: 1323	n:260000
RNF213   260000 perm   130 sec   (1997 perm/sec)   p_kst 5.088462e-03   p_cons 2.028615e-01   p_joint 1.358077e-02

Joint ci ratio: 6.628145e-02	ci left: 1.236480e-02	ci right 1.321607e-02	k: 3452	n:270000
Cons ci ratio: 1.494516e-02	ci left: 2.015432e-01	ci right 2.045817e-01	k: 54826	n:270000
KS ci ratio: 1.053294e-01	ci left: 4.834788e-03	ci right 5.375919e-03	k: 1377	n:270000
RNF213   270000 perm   136 sec   (1984 perm/sec)   p_kst 5.100000e-03   p_cons 2.030593e-01   p_joint 1.278519e-02

Joint ci ratio: 6.537330e-02	ci left: 1.226391e-02	ci right 1.309622e-02	k: 3549	n:280000
Cons ci ratio: 1.467595e-02	ci left: 2.015684e-01	ci right 2.045520e-01	k: 56856	n:280000
KS ci ratio: 1.035421e-01	ci left: 4.829067e-03	ci right 5.359828e-03	k: 1425	n:280000
RNF213   280000 perm   142 sec   (1970 perm/sec)   p_kst 5.089286e-03   p_cons 2.030571e-01   p_joint 1.267500e-02

Joint ci ratio: 6.510061e-02	ci left: 1.194610e-02	ci right 1.275334e-02	k: 3580	n:290000
Cons ci ratio: 1.441266e-02	ci left: 2.017746e-01	ci right 2.047072e-01	k: 58939	n:290000
KS ci ratio: 1.021567e-01	ci left: 4.793566e-03	ci right 5.312952e-03	k: 1464	n:290000
RNF213   290000 perm   148 sec   (1955 perm/sec)   p_kst 5.048276e-03   p_cons 2.032379e-01   p_joint 1.234483e-02

Joint ci ratio: 6.492179e-02	ci left: 1.161670e-02	ci right 1.239944e-02	k: 3601	n:300000
Cons ci ratio: 1.417645e-02	ci left: 2.016616e-01	ci right 2.045441e-01	k: 60930	n:300000
KS ci ratio: 1.005904e-01	ci left: 4.783225e-03	ci right 5.293075e-03	k: 1510	n:300000
RNF213   300000 perm   154 sec   (1942 perm/sec)   p_kst 5.033333e-03   p_cons 2.031000e-01   p_joint 1.200333e-02

Joint ci ratio: 6.532092e-02	ci left: 1.110859e-02	ci right 1.186187e-02	k: 3559	n:310000
Cons ci ratio: 1.338921e-02	ci left: 2.151574e-01	ci right 2.180608e-01	k: 67148	n:310000
KS ci ratio: 9.855477e-02	ci left: 4.827098e-03	ci right 5.330610e-03	k: 1573	n:310000
RNF213   310000 perm   161 sec   (1927 perm/sec)   p_kst 5.074194e-03   p_cons 2.166065e-01   p_joint 1.148065e-02

Outputting figure to mutsig2_images.part000000000148/RNF213.17_16211_310000_0.0050742_0.21661_0.011481.png
                gene_name: RNF213
               theta_stop: 0.099 
                    nperm: 310000 
                     p_ks: 0.0051 
        ci_ks_bounds_left: 0.0048 
       ci_ks_bounds_right: 0.0053 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 8 percent done.
ROCK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.172698e-02	ci left: 3.552563e-01	ci right 3.742225e-01	k: 3647	n:10000
Cons ci ratio: 2.570989e-02	ci left: 6.901044e-01	ci right 7.081794e-01	k: 6992	n:10000
KS ci ratio: 6.859028e-02	ci left: 2.376826e-01	ci right 2.546655e-01	k: 2461	n:10000
ROCK1   10000 perm   2 sec   (4438 perm/sec)   p_kst 2.461000e-01   p_cons 6.992000e-01   p_joint 3.647000e-01

Outputting figure to mutsig2_images.part000000000148/ROCK1.15_4197_10000_0.2461_0.6992_0.3647.png
                gene_name: ROCK1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 9 percent done.
RNF43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.460899e-02	ci left: 5.521087e-01	ci right 5.716552e-01	k: 5619	n:10000
Cons ci ratio: 5.654465e-02	ci left: 3.153259e-01	ci right 3.337764e-01	k: 3245	n:10000
KS ci ratio: 1.786148e-02	ci left: 8.205599e-01	ci right 8.354485e-01	k: 8281	n:10000
RNF43   10000 perm   2 sec   (4964 perm/sec)   p_kst 8.281000e-01   p_cons 3.245000e-01   p_joint 5.619000e-01

Outputting figure to mutsig2_images.part000000000148/RNF43.12_2388_10000_0.8281_0.3245_0.5619.png
                gene_name: RNF43
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 11 percent done.
RNF150
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.242904e-01	ci left: 1.206533e-02	ci right 1.682370e-02	k: 143	n:10000
Cons ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
KS ci ratio: 2.613506e-01	ci left: 1.912136e-02	ci right 2.496169e-02	k: 219	n:10000
RNF150   10000 perm   2 sec   (5868 perm/sec)   p_kst 2.190000e-02   p_cons 9.200000e-03   p_joint 1.430000e-02

Joint ci ratio: 3.076857e-01	ci left: 6.812321e-03	ci right 9.333850e-03	k: 160	n:20000
Cons ci ratio: 2.868611e-01	ci left: 7.923549e-03	ci right 1.062202e-02	k: 184	n:20000
KS ci ratio: 1.863283e-01	ci left: 1.963004e-02	ci right 2.371068e-02	k: 432	n:20000
RNF150   20000 perm   4 sec   (5252 perm/sec)   p_kst 2.160000e-02   p_cons 9.200000e-03   p_joint 8.000000e-03

Joint ci ratio: 3.527233e-01	ci left: 3.378230e-03	ci right 4.853689e-03	k: 122	n:30000
Cons ci ratio: 2.627104e-01	ci left: 6.399145e-03	ci right 8.364734e-03	k: 220	n:30000
KS ci ratio: 1.520778e-01	ci left: 2.001685e-02	ci right 2.334335e-02	k: 649	n:30000
RNF150   30000 perm   6 sec   (4970 perm/sec)   p_kst 2.163333e-02   p_cons 7.333333e-03   p_joint 4.066667e-03

Joint ci ratio: 3.954895e-01	ci left: 1.966938e-03	ci right 2.957505e-03	k: 97	n:40000
Cons ci ratio: 2.313692e-01	ci left: 6.300632e-03	ci right 7.972121e-03	k: 284	n:40000
KS ci ratio: 1.320677e-01	ci left: 2.012510e-02	ci right 2.299494e-02	k: 861	n:40000
RNF150   40000 perm   8 sec   (4826 perm/sec)   p_kst 2.152500e-02   p_cons 7.100000e-03   p_joint 2.425000e-03

Joint ci ratio: 3.574122e-01	ci left: 1.972016e-03	ci right 2.847358e-03	k: 119	n:50000
Cons ci ratio: 2.090971e-01	ci left: 6.250037e-03	ci right 7.728073e-03	k: 348	n:50000
KS ci ratio: 1.172661e-01	ci left: 2.057668e-02	ci right 2.315924e-02	k: 1092	n:50000
RNF150   50000 perm   11 sec   (4705 perm/sec)   p_kst 2.184000e-02   p_cons 6.960000e-03   p_joint 2.380000e-03

Joint ci ratio: 3.936464e-01	ci left: 1.326212e-03	ci right 1.990155e-03	k: 98	n:60000
Cons ci ratio: 1.912934e-01	ci left: 6.284992e-03	ci right 7.630030e-03	k: 416	n:60000
KS ci ratio: 1.076208e-01	ci left: 2.046787e-02	ci right 2.281205e-02	k: 1297	n:60000
RNF150   60000 perm   13 sec   (4599 perm/sec)   p_kst 2.161667e-02   p_cons 6.933333e-03   p_joint 1.633333e-03

Joint ci ratio: 3.636586e-01	ci left: 1.356532e-03	ci right 1.971677e-03	k: 115	n:70000
Cons ci ratio: 1.764654e-01	ci left: 6.382082e-03	ci right 7.630738e-03	k: 489	n:70000
KS ci ratio: 9.968245e-02	ci left: 2.053580e-02	ci right 2.270411e-02	k: 1512	n:70000
RNF150   70000 perm   16 sec   (4500 perm/sec)   p_kst 2.160000e-02   p_cons 6.985714e-03   p_joint 1.642857e-03

Joint ci ratio: 3.435251e-01	ci left: 1.346431e-03	ci right 1.915692e-03	k: 129	n:80000
Cons ci ratio: 1.638936e-01	ci left: 6.517875e-03	ci right 7.693296e-03	k: 567	n:80000
KS ci ratio: 9.374840e-02	ci left: 2.038391e-02	ci right 2.240101e-02	k: 1710	n:80000
RNF150   80000 perm   18 sec   (4412 perm/sec)   p_kst 2.137500e-02   p_cons 7.087500e-03   p_joint 1.612500e-03

Joint ci ratio: 3.219552e-01	ci left: 1.380140e-03	ci right 1.919465e-03	k: 147	n:90000
Cons ci ratio: 1.561280e-01	ci left: 6.412288e-03	ci right 7.508741e-03	k: 625	n:90000
KS ci ratio: 8.836051e-02	ci left: 2.045358e-02	ci right 2.235522e-02	k: 1925	n:90000
RNF150   90000 perm   21 sec   (4331 perm/sec)   p_kst 2.138889e-02   p_cons 6.944444e-03   p_joint 1.633333e-03

Joint ci ratio: 3.503945e-01	ci left: 1.031470e-03	ci right 1.478267e-03	k: 124	n:100000
Cons ci ratio: 1.479615e-01	ci left: 6.454070e-03	ci right 7.494835e-03	k: 696	n:100000
KS ci ratio: 8.398674e-02	ci left: 2.042382e-02	ci right 2.222409e-02	k: 2131	n:100000
RNF150   100000 perm   24 sec   (4254 perm/sec)   p_kst 2.131000e-02   p_cons 6.960000e-03   p_joint 1.240000e-03

Joint ci ratio: 3.879561e-01	ci left: 7.479345e-04	ci right 1.115564e-03	k: 101	n:110000
Cons ci ratio: 1.379139e-01	ci left: 6.787857e-03	ci right 7.802017e-03	k: 801	n:110000
KS ci ratio: 8.008174e-02	ci left: 2.046377e-02	ci right 2.217977e-02	k: 2344	n:110000
RNF150   110000 perm   26 sec   (4182 perm/sec)   p_kst 2.130909e-02   p_cons 7.281818e-03   p_joint 9.181818e-04

Joint ci ratio: 3.823838e-01	ci left: 7.081827e-04	ci right 1.050015e-03	k: 104	n:120000
Cons ci ratio: 1.320356e-01	ci left: 6.810004e-03	ci right 7.780702e-03	k: 874	n:120000
KS ci ratio: 7.656826e-02	ci left: 2.055593e-02	ci right 2.220065e-02	k: 2564	n:120000
RNF150   120000 perm   29 sec   (4116 perm/sec)   p_kst 2.136667e-02   p_cons 7.283333e-03   p_joint 8.666667e-04

Joint ci ratio: 4.275672e-01	ci left: 5.085621e-04	ci right 7.914086e-04	k: 83	n:130000
Cons ci ratio: 1.270528e-01	ci left: 6.807171e-03	ci right 7.738087e-03	k: 944	n:130000
KS ci ratio: 7.368306e-02	ci left: 2.052199e-02	ci right 2.209947e-02	k: 2769	n:130000
RNF150   130000 perm   32 sec   (4055 perm/sec)   p_kst 2.130000e-02   p_cons 7.261538e-03   p_joint 6.384615e-04

Joint ci ratio: 4.107926e-01	ci left: 5.169638e-04	ci right 7.901224e-04	k: 90	n:140000
Cons ci ratio: 1.225338e-01	ci left: 6.812259e-03	ci right 7.708331e-03	k: 1015	n:140000
KS ci ratio: 7.108900e-02	ci left: 2.050092e-02	ci right 2.201900e-02	k: 2975	n:140000
RNF150   140000 perm   35 sec   (3991 perm/sec)   p_kst 2.125000e-02   p_cons 7.250000e-03   p_joint 6.428571e-04

Joint ci ratio: 3.533084e-01	ci left: 6.754685e-04	ci right 9.710445e-04	k: 122	n:150000
Cons ci ratio: 1.189067e-01	ci left: 6.765416e-03	ci right 7.627131e-03	k: 1078	n:150000
KS ci ratio: 6.829188e-02	ci left: 2.075881e-02	ci right 2.223310e-02	k: 3223	n:150000
RNF150   150000 perm   38 sec   (3929 perm/sec)   p_kst 2.148667e-02   p_cons 7.186667e-03   p_joint 8.133333e-04

Joint ci ratio: 3.490827e-01	ci left: 6.503462e-04	ci right 9.307545e-04	k: 125	n:160000
Cons ci ratio: 1.154818e-01	ci left: 6.736914e-03	ci right 7.568596e-03	k: 1143	n:160000
KS ci ratio: 6.605402e-02	ci left: 2.082560e-02	ci right 2.225431e-02	k: 3445	n:160000
RNF150   160000 perm   41 sec   (3857 perm/sec)   p_kst 2.153125e-02   p_cons 7.143750e-03   p_joint 7.812500e-04

Joint ci ratio: 3.702821e-01	ci left: 5.371668e-04	ci right 7.862572e-04	k: 111	n:170000
Cons ci ratio: 1.116413e-01	ci left: 6.797859e-03	ci right 7.607319e-03	k: 1223	n:170000
KS ci ratio: 6.380961e-02	ci left: 2.102419e-02	ci right 2.241571e-02	k: 3691	n:170000
RNF150   170000 perm   45 sec   (3809 perm/sec)   p_kst 2.171176e-02   p_cons 7.194118e-03   p_joint 6.529412e-04

Joint ci ratio: 4.226023e-01	ci left: 3.772112e-04	ci right 5.838775e-04	k: 85	n:180000
Cons ci ratio: 1.079934e-01	ci left: 6.874064e-03	ci right 7.664152e-03	k: 1307	n:180000
KS ci ratio: 6.181149e-02	ci left: 2.117956e-02	ci right 2.253590e-02	k: 3933	n:180000
RNF150   180000 perm   48 sec   (3760 perm/sec)   p_kst 2.185000e-02   p_cons 7.261111e-03   p_joint 4.722222e-04

Joint ci ratio: 4.108282e-01	ci left: 3.809147e-04	ci right 5.822067e-04	k: 90	n:190000
Cons ci ratio: 1.047191e-01	ci left: 6.937506e-03	ci right 7.709220e-03	k: 1390	n:190000
KS ci ratio: 6.032316e-02	ci left: 2.108583e-02	ci right 2.240251e-02	k: 4130	n:190000
RNF150   190000 perm   51 sec   (3710 perm/sec)   p_kst 2.173684e-02   p_cons 7.315789e-03   p_joint 4.736842e-04

Joint ci ratio: 2.108631e-01	ci left: 1.543154e-03	ci right 1.911529e-03	k: 344	n:200000
Cons ci ratio: 1.018300e-01	ci left: 6.980307e-03	ci right 7.734078e-03	k: 1470	n:200000
KS ci ratio: 5.881940e-02	ci left: 2.108560e-02	ci right 2.236832e-02	k: 4344	n:200000
RNF150   200000 perm   55 sec   (3659 perm/sec)   p_kst 2.172000e-02   p_cons 7.350000e-03   p_joint 1.720000e-03

Joint ci ratio: 2.300308e-01	ci left: 1.222175e-03	ci right 1.544222e-03	k: 289	n:210000
Cons ci ratio: 9.900686e-02	ci left: 7.042519e-03	ci right 7.780699e-03	k: 1555	n:210000
KS ci ratio: 5.740991e-02	ci left: 2.109515e-02	ci right 2.234668e-02	k: 4560	n:210000
RNF150   210000 perm   58 sec   (3609 perm/sec)   p_kst 2.171429e-02   p_cons 7.404762e-03   p_joint 1.376190e-03

Joint ci ratio: 2.228438e-01	ci left: 1.248090e-03	ci right 1.565280e-03	k: 308	n:220000
Cons ci ratio: 9.643582e-02	ci left: 7.094901e-03	ci right 7.818168e-03	k: 1639	n:220000
KS ci ratio: 5.611513e-02	ci left: 2.109071e-02	ci right 2.231284e-02	k: 4773	n:220000
RNF150   220000 perm   62 sec   (3557 perm/sec)   p_kst 2.169545e-02   p_cons 7.450000e-03   p_joint 1.400000e-03

Joint ci ratio: 2.166219e-01	ci left: 1.267781e-03	ci right 1.579784e-03	k: 326	n:230000
Cons ci ratio: 9.469370e-02	ci left: 7.045297e-03	ci right 7.749812e-03	k: 1700	n:230000
KS ci ratio: 5.498311e-02	ci left: 2.102690e-02	ci right 2.221998e-02	k: 4972	n:230000
RNF150   230000 perm   66 sec   (3506 perm/sec)   p_kst 2.161739e-02   p_cons 7.391304e-03   p_joint 1.417391e-03

Joint ci ratio: 2.265577e-01	ci left: 1.104751e-03	ci right 1.390846e-03	k: 298	n:240000
Cons ci ratio: 9.202221e-02	ci left: 7.158701e-03	ci right 7.853273e-03	k: 1800	n:240000
KS ci ratio: 5.372088e-02	ci left: 2.112078e-02	ci right 2.229081e-02	k: 5208	n:240000
RNF150   240000 perm   69 sec   (3457 perm/sec)   p_kst 2.170000e-02   p_cons 7.500000e-03   p_joint 1.241667e-03

Joint ci ratio: 2.269437e-01	ci left: 1.056785e-03	ci right 1.330990e-03	k: 297	n:250000
Cons ci ratio: 9.030963e-02	ci left: 7.142057e-03	ci right 7.821437e-03	k: 1869	n:250000
KS ci ratio: 5.260104e-02	ci left: 2.116005e-02	ci right 2.230708e-02	k: 5432	n:250000
RNF150   250000 perm   73 sec   (3411 perm/sec)   p_kst 2.172800e-02   p_cons 7.476000e-03   p_joint 1.188000e-03

Joint ci ratio: 2.207327e-01	ci left: 1.077860e-03	ci right 1.348840e-03	k: 314	n:260000
Cons ci ratio: 8.868922e-02	ci left: 7.126804e-03	ci right 7.791938e-03	k: 1938	n:260000
KS ci ratio: 5.150191e-02	ci left: 2.123451e-02	ci right 2.236080e-02	k: 5666	n:260000
RNF150   260000 perm   77 sec   (3366 perm/sec)   p_kst 2.179231e-02   p_cons 7.453846e-03   p_joint 1.207692e-03

Joint ci ratio: 2.183224e-01	ci left: 1.062439e-03	ci right 1.326234e-03	k: 321	n:270000
Cons ci ratio: 8.706570e-02	ci left: 7.127277e-03	ci right 7.779659e-03	k: 2011	n:270000
KS ci ratio: 5.043398e-02	ci left: 2.133294e-02	ci right 2.244032e-02	k: 5908	n:270000
RNF150   270000 perm   81 sec   (3322 perm/sec)   p_kst 2.188148e-02   p_cons 7.448148e-03   p_joint 1.188889e-03

Joint ci ratio: 2.143645e-01	ci left: 1.065030e-03	ci right 1.324044e-03	k: 333	n:280000
Cons ci ratio: 8.571476e-02	ci left: 7.096360e-03	ci right 7.735328e-03	k: 2075	n:280000
KS ci ratio: 4.945037e-02	ci left: 2.140693e-02	ci right 2.249585e-02	k: 6145	n:280000
RNF150   280000 perm   85 sec   (3279 perm/sec)   p_kst 2.194643e-02   p_cons 7.410714e-03   p_joint 1.189286e-03

Joint ci ratio: 2.091071e-01	ci left: 1.083819e-03	ci right 1.340110e-03	k: 350	n:290000
Cons ci ratio: 8.381538e-02	ci left: 7.172311e-03	ci right 7.803108e-03	k: 2170	n:290000
KS ci ratio: 4.854938e-02	ci left: 2.145216e-02	ci right 2.252294e-02	k: 6375	n:290000
RNF150   290000 perm   90 sec   (3238 perm/sec)   p_kst 2.198276e-02   p_cons 7.482759e-03   p_joint 1.206897e-03

Joint ci ratio: 2.073446e-01	ci left: 1.066647e-03	ci right 1.316482e-03	k: 356	n:300000
Cons ci ratio: 8.258952e-02	ci left: 7.145389e-03	ci right 7.764183e-03	k: 2235	n:300000
KS ci ratio: 4.769590e-02	ci left: 2.149454e-02	ci right 2.254806e-02	k: 6605	n:300000
RNF150   300000 perm   94 sec   (3199 perm/sec)   p_kst 2.201667e-02   p_cons 7.450000e-03   p_joint 1.186667e-03

Joint ci ratio: 2.186794e-01	ci left: 9.222933e-04	ci right 1.151715e-03	k: 320	n:310000
Cons ci ratio: 8.085141e-02	ci left: 7.221412e-03	ci right 7.833010e-03	k: 2332	n:310000
KS ci ratio: 4.693508e-02	ci left: 2.148969e-02	ci right 2.252572e-02	k: 6821	n:310000
RNF150   310000 perm   98 sec   (3161 perm/sec)   p_kst 2.200323e-02   p_cons 7.522581e-03   p_joint 1.032258e-03

Joint ci ratio: 2.300856e-01	ci left: 8.020319e-04	ci right 1.013425e-03	k: 289	n:320000
Cons ci ratio: 7.959904e-02	ci left: 7.222354e-03	ci right 7.824116e-03	k: 2406	n:320000
KS ci ratio: 4.618270e-02	ci left: 2.151000e-02	ci right 2.252994e-02	k: 7045	n:320000
RNF150   320000 perm   102 sec   (3123 perm/sec)   p_kst 2.201563e-02   p_cons 7.518750e-03   p_joint 9.031250e-04

Joint ci ratio: 2.371507e-01	ci left: 7.292238e-04	ci right 9.281954e-04	k: 272	n:330000
Cons ci ratio: 7.849881e-02	ci left: 7.205479e-03	ci right 7.797158e-03	k: 2474	n:330000
KS ci ratio: 4.589323e-02	ci left: 2.113366e-02	ci right 2.212931e-02	k: 7137	n:330000
RNF150   330000 perm   107 sec   (3078 perm/sec)   p_kst 2.162727e-02   p_cons 7.496970e-03   p_joint 8.242424e-04

Joint ci ratio: 1.620711e-01	ci left: 1.578429e-03	ci right 1.859584e-03	k: 583	n:340000
Cons ci ratio: 7.739699e-02	ci left: 7.198305e-03	ci right 7.780725e-03	k: 2545	n:340000
KS ci ratio: 4.525200e-02	ci left: 2.110524e-02	ci right 2.208529e-02	k: 7341	n:340000
RNF150   340000 perm   112 sec   (3042 perm/sec)   p_kst 2.159118e-02   p_cons 7.485294e-03   p_joint 1.714706e-03

Joint ci ratio: 1.597626e-01	ci left: 1.579947e-03	ci right 1.856979e-03	k: 600	n:350000
Cons ci ratio: 7.607714e-02	ci left: 7.242052e-03	ci right 7.817576e-03	k: 2634	n:350000
KS ci ratio: 4.458260e-02	ci left: 2.112940e-02	ci right 2.209569e-02	k: 7563	n:350000
RNF150   350000 perm   116 sec   (3009 perm/sec)   p_kst 2.160857e-02   p_cons 7.525714e-03   p_joint 1.714286e-03

Joint ci ratio: 1.609783e-01	ci left: 1.512058e-03	ci right 1.779399e-03	k: 591	n:360000
Cons ci ratio: 7.486412e-02	ci left: 7.275268e-03	ci right 7.843812e-03	k: 2720	n:360000
KS ci ratio: 4.398538e-02	ci left: 2.111110e-02	ci right 2.206329e-02	k: 7770	n:360000
RNF150   360000 perm   121 sec   (2976 perm/sec)   p_kst 2.158333e-02   p_cons 7.555556e-03   p_joint 1.641667e-03

Joint ci ratio: 1.622216e-01	ci left: 1.447847e-03	ci right 1.706005e-03	k: 582	n:370000
Cons ci ratio: 7.362807e-02	ci left: 7.322678e-03	ci right 7.885075e-03	k: 2812	n:370000
KS ci ratio: 4.338375e-02	ci left: 2.112061e-02	ci right 2.205988e-02	k: 7987	n:370000
RNF150   370000 perm   126 sec   (2943 perm/sec)   p_kst 2.158649e-02   p_cons 7.600000e-03   p_joint 1.572973e-03

Joint ci ratio: 1.645014e-01	ci left: 1.369357e-03	ci right 1.617291e-03	k: 566	n:380000
Cons ci ratio: 7.274202e-02	ci left: 7.308230e-03	ci right 7.862476e-03	k: 2881	n:380000
KS ci ratio: 4.283284e-02	ci left: 2.110367e-02	ci right 2.202997e-02	k: 8194	n:380000
RNF150   380000 perm   131 sec   (2911 perm/sec)   p_kst 2.156316e-02   p_cons 7.581579e-03   p_joint 1.489474e-03

Joint ci ratio: 1.708046e-01	ci left: 1.233520e-03	ci right 1.466298e-03	k: 525	n:390000
Cons ci ratio: 7.169163e-02	ci left: 7.334856e-03	ci right 7.882755e-03	k: 2966	n:390000
KS ci ratio: 4.227669e-02	ci left: 2.111304e-02	ci right 2.202742e-02	k: 8411	n:390000
RNF150   390000 perm   135 sec   (2879 perm/sec)   p_kst 2.156667e-02   p_cons 7.605128e-03   p_joint 1.346154e-03

Joint ci ratio: 1.679541e-01	ci left: 1.245775e-03	ci right 1.476546e-03	k: 543	n:400000
Cons ci ratio: 7.052265e-02	ci left: 7.394591e-03	ci right 7.937577e-03	k: 3065	n:400000
KS ci ratio: 4.172189e-02	ci left: 2.114181e-02	ci right 2.204514e-02	k: 8636	n:400000
RNF150   400000 perm   140 sec   (2848 perm/sec)   p_kst 2.159000e-02   p_cons 7.662500e-03   p_joint 1.357500e-03

Joint ci ratio: 1.667337e-01	ci left: 1.234084e-03	ci right 1.460862e-03	k: 551	n:410000
Cons ci ratio: 6.973170e-02	ci left: 7.381972e-03	ci right 7.917705e-03	k: 3135	n:410000
KS ci ratio: 4.120739e-02	ci left: 2.114994e-02	ci right 2.204221e-02	k: 8853	n:410000
RNF150   410000 perm   145 sec   (2818 perm/sec)   p_kst 2.159268e-02   p_cons 7.646341e-03   p_joint 1.343902e-03

Joint ci ratio: 1.665854e-01	ci left: 1.206982e-03	ci right 1.428561e-03	k: 552	n:420000
Cons ci ratio: 6.882629e-02	ci left: 7.400408e-03	ci right 7.930228e-03	k: 3218	n:420000
KS ci ratio: 4.068855e-02	ci left: 2.118132e-02	ci right 2.206339e-02	k: 9080	n:420000
RNF150   420000 perm   151 sec   (2789 perm/sec)   p_kst 2.161905e-02   p_cons 7.661905e-03   p_joint 1.314286e-03

Joint ci ratio: 1.755574e-01	ci left: 1.056471e-03	ci right 1.261974e-03	k: 497	n:430000
Cons ci ratio: 6.787246e-02	ci left: 7.436321e-03	ci right 7.961043e-03	k: 3309	n:430000
KS ci ratio: 4.025962e-02	ci left: 2.113762e-02	ci right 2.200838e-02	k: 9275	n:430000
RNF150   430000 perm   156 sec   (2761 perm/sec)   p_kst 2.156977e-02   p_cons 7.695349e-03   p_joint 1.155814e-03

Joint ci ratio: 1.793870e-01	ci left: 9.868492e-04	ci right 1.183452e-03	k: 476	n:440000
Cons ci ratio: 6.698698e-02	ci left: 7.463945e-03	ci right 7.983478e-03	k: 3397	n:440000
KS ci ratio: 3.979033e-02	ci left: 2.115222e-02	ci right 2.201319e-02	k: 9495	n:440000
RNF150   440000 perm   161 sec   (2733 perm/sec)   p_kst 2.157955e-02   p_cons 7.720455e-03   p_joint 1.081818e-03

Joint ci ratio: 1.803378e-01	ci left: 9.543069e-04	ci right 1.145544e-03	k: 471	n:450000
Cons ci ratio: 6.602085e-02	ci left: 7.516613e-03	ci right 8.031977e-03	k: 3497	n:450000
KS ci ratio: 3.933500e-02	ci left: 2.116842e-02	ci right 2.201997e-02	k: 9716	n:450000
RNF150   450000 perm   166 sec   (2706 perm/sec)   p_kst 2.159111e-02   p_cons 7.771111e-03   p_joint 1.046667e-03

Joint ci ratio: 1.777207e-01	ci left: 9.626325e-04	ci right 1.152438e-03	k: 485	n:460000
Cons ci ratio: 6.536134e-02	ci left: 7.505019e-03	ci right 8.014254e-03	k: 3568	n:460000
KS ci ratio: 3.890297e-02	ci left: 2.117537e-02	ci right 2.201763e-02	k: 9933	n:460000
RNF150   460000 perm   172 sec   (2678 perm/sec)   p_kst 2.159348e-02   p_cons 7.756522e-03   p_joint 1.054348e-03

Joint ci ratio: 1.753899e-01	ci left: 9.685885e-04	ci right 1.156798e-03	k: 498	n:470000
Cons ci ratio: 6.458723e-02	ci left: 7.525346e-03	ci right 8.029686e-03	k: 3654	n:470000
KS ci ratio: 3.848292e-02	ci left: 2.118417e-02	ci right 2.201749e-02	k: 10151	n:470000
RNF150   470000 perm   177 sec   (2651 perm/sec)   p_kst 2.159787e-02   p_cons 7.774468e-03   p_joint 1.059574e-03

Joint ci ratio: 1.733181e-01	ci left: 9.723187e-04	ci right 1.158788e-03	k: 510	n:480000
Cons ci ratio: 6.395207e-02	ci left: 7.518206e-03	ci right 8.016929e-03	k: 3727	n:480000
KS ci ratio: 3.804246e-02	ci left: 2.122981e-02	ci right 2.205515e-02	k: 10387	n:480000
RNF150   480000 perm   183 sec   (2625 perm/sec)   p_kst 2.163958e-02   p_cons 7.764583e-03   p_joint 1.062500e-03

Joint ci ratio: 1.743476e-01	ci left: 9.407620e-04	ci right 1.122364e-03	k: 504	n:490000
Cons ci ratio: 6.335208e-02	ci left: 7.507364e-03	ci right 8.000524e-03	k: 3798	n:490000
KS ci ratio: 3.768756e-02	ci left: 2.119477e-02	ci right 2.201090e-02	k: 10584	n:490000
RNF150   490000 perm   188 sec   (2600 perm/sec)   p_kst 2.160000e-02   p_cons 7.751020e-03   p_joint 1.028571e-03

Joint ci ratio: 1.724791e-01	ci left: 9.429920e-04	ci right 1.122870e-03	k: 515	n:500000
Cons ci ratio: 6.277684e-02	ci left: 7.495007e-03	ci right 7.982723e-03	k: 3868	n:500000
KS ci ratio: 3.733355e-02	ci left: 2.117108e-02	ci right 2.197847e-02	k: 10786	n:500000
RNF150   500000 perm   194 sec   (2576 perm/sec)   p_kst 2.157200e-02   p_cons 7.736000e-03   p_joint 1.030000e-03

Joint ci ratio: 1.752216e-01	ci left: 8.944924e-04	ci right 1.068120e-03	k: 499	n:510000
Cons ci ratio: 6.205052e-02	ci left: 7.523697e-03	ci right 8.007411e-03	k: 3959	n:510000
KS ci ratio: 3.699622e-02	ci left: 2.114058e-02	ci right 2.193937e-02	k: 10984	n:510000
RNF150   510000 perm   200 sec   (2552 perm/sec)   p_kst 2.153725e-02   p_cons 7.762745e-03   p_joint 9.784314e-04

Joint ci ratio: 1.752233e-01	ci left: 8.772900e-04	ci right 1.047580e-03	k: 499	n:520000
Cons ci ratio: 6.152510e-02	ci left: 7.507757e-03	ci right 7.986214e-03	k: 4027	n:520000
KS ci ratio: 3.664610e-02	ci left: 2.113607e-02	ci right 2.192697e-02	k: 11195	n:520000
RNF150   520000 perm   206 sec   (2527 perm/sec)   p_kst 2.152885e-02   p_cons 7.744231e-03   p_joint 9.596154e-04

Joint ci ratio: 1.743544e-01	ci left: 8.697583e-04	ci right 1.037661e-03	k: 504	n:530000
Cons ci ratio: 6.086323e-02	ci left: 7.529601e-03	ci right 8.004106e-03	k: 4115	n:530000
KS ci ratio: 3.631713e-02	ci left: 2.111866e-02	ci right 2.190167e-02	k: 11399	n:530000
RNF150   530000 perm   212 sec   (2499 perm/sec)   p_kst 2.150755e-02   p_cons 7.764151e-03   p_joint 9.509434e-04

Joint ci ratio: 1.724857e-01	ci left: 8.731380e-04	ci right 1.039698e-03	k: 515	n:540000
Cons ci ratio: 6.027287e-02	ci left: 7.537893e-03	ci right 8.008152e-03	k: 4196	n:540000
KS ci ratio: 3.598894e-02	ci left: 2.111111e-02	ci right 2.188662e-02	k: 11608	n:540000
RNF150   540000 perm   218 sec   (2472 perm/sec)   p_kst 2.149630e-02   p_cons 7.770370e-03   p_joint 9.537037e-04

Joint ci ratio: 1.713280e-01	ci left: 8.694423e-04	ci right 1.034069e-03	k: 522	n:550000
Cons ci ratio: 5.967827e-02	ci left: 7.551279e-03	ci right 8.017565e-03	k: 4280	n:550000
KS ci ratio: 3.569883e-02	ci left: 2.106963e-02	ci right 2.183724e-02	k: 11798	n:550000
RNF150   550000 perm   225 sec   (2448 perm/sec)   p_kst 2.145091e-02   p_cons 7.781818e-03   p_joint 9.490909e-04

Joint ci ratio: 1.740143e-01	ci left: 8.265782e-04	ci right 9.858009e-04	k: 506	n:560000
Cons ci ratio: 5.925161e-02	ci left: 7.525499e-03	ci right 7.986758e-03	k: 4342	n:560000
KS ci ratio: 3.537343e-02	ci left: 2.107921e-02	ci right 2.184004e-02	k: 12016	n:560000
RNF150   560000 perm   231 sec   (2426 perm/sec)   p_kst 2.145714e-02   p_cons 7.753571e-03   p_joint 9.035714e-04

Joint ci ratio: 1.728257e-01	ci left: 8.238244e-04	ci right 9.813195e-04	k: 513	n:570000
Cons ci ratio: 5.882051e-02	ci left: 7.504094e-03	ci right 7.960580e-03	k: 4406	n:570000
KS ci ratio: 3.506556e-02	ci left: 2.107805e-02	ci right 2.183208e-02	k: 12228	n:570000
RNF150   570000 perm   239 sec   (2386 perm/sec)   p_kst 2.145263e-02   p_cons 7.729825e-03   p_joint 9.000000e-04

Joint ci ratio: 1.713322e-01	ci left: 8.244694e-04	ci right 9.805851e-04	k: 522	n:580000
Cons ci ratio: 5.817616e-02	ci left: 7.541211e-03	ci right 7.994761e-03	k: 4504	n:580000
KS ci ratio: 3.477559e-02	ci left: 2.106500e-02	ci right 2.181221e-02	k: 12433	n:580000
RNF150   580000 perm   246 sec   (2354 perm/sec)   p_kst 2.143621e-02   p_cons 7.765517e-03   p_joint 9.000000e-04

Joint ci ratio: 1.735053e-01	ci left: 7.894111e-04	ci right 9.409829e-04	k: 509	n:590000
Cons ci ratio: 5.776795e-02	ci left: 7.520294e-03	ci right 7.969306e-03	k: 4568	n:590000
KS ci ratio: 3.446344e-02	ci left: 2.108770e-02	ci right 2.182887e-02	k: 12659	n:590000
RNF150   590000 perm   253 sec   (2332 perm/sec)   p_kst 2.145593e-02   p_cons 7.742373e-03   p_joint 8.627119e-04

Joint ci ratio: 1.733366e-01	ci left: 7.778481e-04	ci right 9.270393e-04	k: 510	n:600000
Cons ci ratio: 5.729970e-02	ci left: 7.518157e-03	ci right 7.963282e-03	k: 4643	n:600000
KS ci ratio: 3.418261e-02	ci left: 2.108159e-02	ci right 2.181638e-02	k: 12868	n:600000
RNF150   600000 perm   259 sec   (2312 perm/sec)   p_kst 2.144667e-02   p_cons 7.738333e-03   p_joint 8.500000e-04

Joint ci ratio: 1.718299e-01	ci left: 7.792134e-04	ci right 9.272326e-04	k: 519	n:610000
Cons ci ratio: 5.692172e-02	ci left: 7.495094e-03	ci right 7.935830e-03	k: 4705	n:610000
KS ci ratio: 3.389396e-02	ci left: 2.109357e-02	ci right 2.182246e-02	k: 13088	n:610000
RNF150   610000 perm   266 sec   (2293 perm/sec)   p_kst 2.145574e-02   p_cons 7.713115e-03   p_joint 8.508197e-04

Joint ci ratio: 1.705233e-01	ci left: 7.789958e-04	ci right 9.257328e-04	k: 527	n:620000
Cons ci ratio: 5.643791e-02	ci left: 7.503000e-03	ci right 7.940329e-03	k: 4786	n:620000
KS ci ratio: 3.363447e-02	ci left: 2.107801e-02	ci right 2.180067e-02	k: 13291	n:620000
RNF150   620000 perm   273 sec   (2275 perm/sec)   p_kst 2.143710e-02   p_cons 7.719355e-03   p_joint 8.500000e-04

Joint ci ratio: 1.692460e-01	ci left: 7.787893e-04	ci right 9.242765e-04	k: 535	n:630000
Cons ci ratio: 5.593728e-02	ci left: 7.518496e-03	ci right 7.952716e-03	k: 4872	n:630000
KS ci ratio: 3.335812e-02	ci left: 2.109129e-02	ci right 2.180835e-02	k: 13512	n:630000
RNF150   630000 perm   279 sec   (2256 perm/sec)   p_kst 2.144762e-02   p_cons 7.733333e-03   p_joint 8.492063e-04

Joint ci ratio: 1.676888e-01	ci left: 7.815870e-04	ci right 9.261177e-04	k: 545	n:640000
Cons ci ratio: 5.556845e-02	ci left: 7.501164e-03	ci right 7.931435e-03	k: 4937	n:640000
KS ci ratio: 3.307985e-02	ci left: 2.111504e-02	ci right 2.182680e-02	k: 13740	n:640000
RNF150   640000 perm   286 sec   (2237 perm/sec)   p_kst 2.146875e-02   p_cons 7.714063e-03   p_joint 8.515625e-04

Joint ci ratio: 1.660244e-01	ci left: 7.857791e-04	ci right 9.294987e-04	k: 556	n:650000
Cons ci ratio: 5.506281e-02	ci left: 7.523828e-03	ci right 7.951346e-03	k: 5028	n:650000
KS ci ratio: 3.279764e-02	ci left: 2.115181e-02	ci right 2.185862e-02	k: 13977	n:650000
RNF150   650000 perm   293 sec   (2219 perm/sec)   p_kst 2.150308e-02   p_cons 7.735385e-03   p_joint 8.553846e-04

Joint ci ratio: 1.651377e-01	ci left: 7.825875e-04	ci right 9.248828e-04	k: 562	n:660000
Cons ci ratio: 5.468926e-02	ci left: 7.512940e-03	ci right 7.936852e-03	k: 5097	n:660000
KS ci ratio: 3.256353e-02	ci left: 2.113488e-02	ci right 2.183599e-02	k: 14179	n:660000
RNF150   660000 perm   300 sec   (2201 perm/sec)   p_kst 2.148333e-02   p_cons 7.722727e-03   p_joint 8.515152e-04

Joint ci ratio: 1.636902e-01	ci left: 7.852184e-04	ci right 9.266174e-04	k: 572	n:670000
Cons ci ratio: 5.425975e-02	ci left: 7.520056e-03	ci right 7.940933e-03	k: 5178	n:670000
KS ci ratio: 3.229765e-02	ci left: 2.116587e-02	ci right 2.186216e-02	k: 14413	n:670000
RNF150   670000 perm   307 sec   (2184 perm/sec)   p_kst 2.151194e-02   p_cons 7.728358e-03   p_joint 8.537313e-04

Joint ci ratio: 1.622801e-01	ci left: 7.877772e-04	ci right 9.282958e-04	k: 582	n:680000
Cons ci ratio: 5.385568e-02	ci left: 7.522623e-03	ci right 7.940411e-03	k: 5256	n:680000
KS ci ratio: 3.206168e-02	ci left: 2.116532e-02	ci right 2.185641e-02	k: 14626	n:680000
RNF150   680000 perm   314 sec   (2167 perm/sec)   p_kst 2.150882e-02   p_cons 7.729412e-03   p_joint 8.558824e-04

Joint ci ratio: 1.692523e-01	ci left: 7.110664e-04	ci right 8.439074e-04	k: 535	n:690000
Cons ci ratio: 5.346556e-02	ci left: 7.523696e-03	ci right 7.938424e-03	k: 5333	n:690000
KS ci ratio: 3.180125e-02	ci left: 2.120363e-02	ci right 2.189025e-02	k: 14866	n:690000
RNF150   690000 perm   321 sec   (2149 perm/sec)   p_kst 2.154493e-02   p_cons 7.728986e-03   p_joint 7.753623e-04

Joint ci ratio: 1.680032e-01	ci left: 7.118545e-04	ci right 8.437620e-04	k: 543	n:700000
Cons ci ratio: 5.309863e-02	ci left: 7.520521e-03	ci right 7.932140e-03	k: 5407	n:700000
KS ci ratio: 3.155027e-02	ci left: 2.123662e-02	ci right 2.191878e-02	k: 15103	n:700000
RNF150   700000 perm   328 sec   (2132 perm/sec)   p_kst 2.157571e-02   p_cons 7.724286e-03   p_joint 7.757143e-04

Joint ci ratio: 1.672367e-01	ci left: 7.085752e-04	ci right 8.392155e-04	k: 548	n:710000
Cons ci ratio: 5.274885e-02	ci left: 7.514664e-03	ci right 7.923171e-03	k: 5479	n:710000
KS ci ratio: 3.130305e-02	ci left: 2.127149e-02	ci right 2.194932e-02	k: 15342	n:710000
RNF150   710000 perm   336 sec   (2115 perm/sec)   p_kst 2.160845e-02   p_cons 7.716901e-03   p_joint 7.718310e-04

Joint ci ratio: 1.661807e-01	ci left: 7.080504e-04	ci right 8.376873e-04	k: 555	n:720000
Cons ci ratio: 5.241541e-02	ci left: 7.506236e-03	ci right 7.911628e-03	k: 5549	n:720000
KS ci ratio: 3.109931e-02	ci left: 2.125442e-02	ci right 2.192722e-02	k: 15544	n:720000
RNF150   720000 perm   343 sec   (2099 perm/sec)   p_kst 2.158889e-02   p_cons 7.706944e-03   p_joint 7.708333e-04

Joint ci ratio: 1.660322e-01	ci left: 6.996638e-04	ci right 8.276392e-04	k: 556	n:730000
Cons ci ratio: 5.205089e-02	ci left: 7.508865e-03	ci right 7.911494e-03	k: 5627	n:730000
KS ci ratio: 3.090351e-02	ci left: 2.123239e-02	ci right 2.190019e-02	k: 15742	n:730000
RNF150   730000 perm   351 sec   (2082 perm/sec)   p_kst 2.156438e-02   p_cons 7.708219e-03   p_joint 7.616438e-04

Joint ci ratio: 1.647068e-01	ci left: 7.018677e-04	ci right 8.291199e-04	k: 565	n:740000
Cons ci ratio: 5.171214e-02	ci left: 7.506097e-03	ci right 7.905880e-03	k: 5701	n:740000
KS ci ratio: 3.066716e-02	ci left: 2.127132e-02	ci right 2.193514e-02	k: 15985	n:740000
RNF150   740000 perm   358 sec   (2066 perm/sec)   p_kst 2.160135e-02   p_cons 7.704054e-03   p_joint 7.635135e-04

Joint ci ratio: 1.641282e-01	ci left: 6.976232e-04	ci right 8.236177e-04	k: 569	n:750000
Cons ci ratio: 5.135752e-02	ci left: 7.509992e-03	ci right 7.907158e-03	k: 5780	n:750000
KS ci ratio: 3.047647e-02	ci left: 2.125365e-02	ci right 2.191272e-02	k: 16186	n:750000
RNF150   750000 perm   366 sec   (2051 perm/sec)   p_kst 2.158133e-02   p_cons 7.706667e-03   p_joint 7.586667e-04

Joint ci ratio: 9.452274e-02	ci left: 2.151144e-03	ci right 2.365836e-03	k: 1715	n:760000
Cons ci ratio: 4.494963e-02	ci left: 9.685131e-03	ci right 1.013177e-02	k: 7529	n:760000
KS ci ratio: 3.027891e-02	ci left: 2.125082e-02	ci right 2.190546e-02	k: 16398	n:760000
RNF150   760000 perm   373 sec   (2035 perm/sec)   p_kst 2.157632e-02   p_cons 9.906579e-03   p_joint 2.256579e-03

Outputting figure to mutsig2_images.part000000000148/RNF150.8_1345_760000_0.021576_0.0099066_0.0022566.png
                gene_name: RNF150
               theta_stop: 0.095 
                    nperm: 760000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.0099 
      ci_cons_bounds_left: 0.0097 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.0023 
     ci_joint_bounds_left: 0.0022 
    ci_joint_bounds_right: 0.0024 

Current progress: 13 percent done.
RNF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.570976e-02	ci left: 2.033338e-01	ci right 2.194347e-01	k: 2113	n:10000
Cons ci ratio: 8.367563e-03	ci left: 9.523170e-01	ci right 9.604144e-01	k: 9565	n:10000
KS ci ratio: 1.189885e-01	ci left: 9.204578e-02	ci right 1.037896e-01	k: 978	n:10000
RNF6   10000 perm   2 sec   (5580 perm/sec)   p_kst 9.780000e-02   p_cons 9.565000e-01   p_joint 2.113000e-01

Joint ci ratio: 4.878366e-02	ci left: 2.380602e-01	ci right 2.500143e-01	k: 4880	n:20000
Cons ci ratio: 5.846203e-03	ci left: 9.545604e-01	ci right 9.602056e-01	k: 19149	n:20000
KS ci ratio: 8.464332e-02	ci left: 9.273591e-02	ci right 1.009817e-01	k: 1936	n:20000
RNF6   20000 perm   4 sec   (5021 perm/sec)   p_kst 9.680000e-02   p_cons 9.574500e-01   p_joint 2.440000e-01

Outputting figure to mutsig2_images.part000000000148/RNF6.8_2070_20000_0.0968_0.95745_0.244.png
                gene_name: RNF6
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 15 percent done.
RNF168
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.070444e-02	ci left: 4.712639e-01	ci right 4.909471e-01	k: 4811	n:10000
Cons ci ratio: 9.952147e-02	ci left: 1.275764e-01	ci right 1.410375e-01	k: 1342	n:10000
KS ci ratio: 1.041773e-02	ci left: 9.290595e-01	ci right 9.388858e-01	k: 9341	n:10000
RNF168   10000 perm   2 sec   (5613 perm/sec)   p_kst 9.341000e-01   p_cons 1.342000e-01   p_joint 4.811000e-01

Outputting figure to mutsig2_images.part000000000148/RNF168.7_1740_10000_0.9341_0.1342_0.4811.png
                gene_name: RNF168
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 17 percent done.
RNF219
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.939167e-02	ci left: 1.881605e-01	ci right 2.038170e-01	k: 1959	n:10000
Cons ci ratio: 2.115201e-02	ci left: 7.661798e-01	ci right 7.826601e-01	k: 7745	n:10000
KS ci ratio: 1.259546e-01	ci left: 8.271234e-02	ci right 9.392883e-02	k: 882	n:10000
RNF219   10000 perm   2 sec   (5027 perm/sec)   p_kst 8.820000e-02   p_cons 7.745000e-01   p_joint 1.959000e-01

Joint ci ratio: 6.427714e-02	ci left: 1.517365e-01	ci right 1.618635e-01	k: 3135	n:20000
Cons ci ratio: 1.451499e-02	ci left: 7.790383e-01	ci right 7.904788e-01	k: 15696	n:20000
KS ci ratio: 8.718300e-02	ci left: 8.778382e-02	ci right 9.583530e-02	k: 1835	n:20000
RNF219   20000 perm   4 sec   (4550 perm/sec)   p_kst 9.175000e-02   p_cons 7.848000e-01   p_joint 1.567500e-01

Outputting figure to mutsig2_images.part000000000148/RNF219.7_2205_20000_0.09175_0.7848_0.15675.png
                gene_name: RNF219
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 19 percent done.
RNF123
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.844278e-02	ci left: 2.384731e-01	ci right 2.554745e-01	k: 2469	n:10000
Cons ci ratio: 2.162976e-02	ci left: 7.581825e-01	ci right 7.748620e-01	k: 7666	n:10000
KS ci ratio: 1.184528e-01	ci left: 9.282438e-02	ci right 1.046106e-01	k: 986	n:10000
RNF123   10000 perm   2 sec   (5085 perm/sec)   p_kst 9.860000e-02   p_cons 7.666000e-01   p_joint 2.469000e-01

Joint ci ratio: 4.593249e-02	ci left: 2.607788e-01	ci right 2.730890e-01	k: 5338	n:20000
Cons ci ratio: 1.516418e-02	ci left: 7.637506e-01	ci right 7.754709e-01	k: 15393	n:20000
KS ci ratio: 8.385469e-02	ci left: 9.435467e-02	ci right 1.026625e-01	k: 1969	n:20000
RNF123   20000 perm   4 sec   (4585 perm/sec)   p_kst 9.845000e-02   p_cons 7.696500e-01   p_joint 2.669000e-01

Outputting figure to mutsig2_images.part000000000148/RNF123.6_4097_20000_0.09845_0.76965_0.2669.png
                gene_name: RNF123
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 21 percent done.
RNF139
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.060498e-01	ci left: 1.137899e-01	ci right 1.266323e-01	k: 1201	n:10000
Cons ci ratio: 3.989796e-02	ci left: 4.812555e-01	ci right 5.009497e-01	k: 4911	n:10000
KS ci ratio: 1.292744e-01	ci left: 7.873206e-02	ci right 8.971158e-02	k: 841	n:10000
RNF139   10000 perm   2 sec   (5473 perm/sec)   p_kst 8.410000e-02   p_cons 4.911000e-01   p_joint 1.201000e-01

Joint ci ratio: 7.290257e-02	ci left: 1.216766e-01	ci right 1.309324e-01	k: 2525	n:20000
Cons ci ratio: 2.661860e-02	ci left: 5.132486e-01	ci right 5.271455e-01	k: 10404	n:20000
KS ci ratio: 9.237437e-02	ci left: 7.877186e-02	ci right 8.645000e-02	k: 1651	n:20000
RNF139   20000 perm   4 sec   (4922 perm/sec)   p_kst 8.255000e-02   p_cons 5.202000e-01   p_joint 1.262500e-01

Outputting figure to mutsig2_images.part000000000148/RNF139.6_2003_20000_0.08255_0.5202_0.12625.png
                gene_name: RNF139
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 23 percent done.
RNF148
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.039378e-02	ci left: 7.788424e-01	ci right 7.949902e-01	k: 7870	n:10000
KS ci ratio: 2.627951e-02	ci left: 6.807302e-01	ci right 6.989591e-01	k: 6899	n:10000
RNF148   10000 perm   2 sec   (6042 perm/sec)   p_kst 6.899000e-01   p_cons 7.870000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000148/RNF148.6_922_10000_0.6899_0.787_1.png
                gene_name: RNF148
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
RNF20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.769459e-02	ci left: 1.949567e-01	ci right 2.108168e-01	k: 2028	n:10000
Cons ci ratio: 6.543425e-02	ci left: 2.553802e-01	ci right 2.727574e-01	k: 2640	n:10000
KS ci ratio: 7.446075e-02	ci left: 2.088557e-01	ci right 2.251095e-01	k: 2169	n:10000
RNF20   10000 perm   2 sec   (4981 perm/sec)   p_kst 2.169000e-01   p_cons 2.640000e-01   p_joint 2.028000e-01

Outputting figure to mutsig2_images.part000000000148/RNF20.6_3004_10000_0.2169_0.264_0.2028.png
                gene_name: RNF20
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 26 percent done.
RNGTT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.222691e-01	ci left: 8.747398e-02	ci right 9.896426e-02	k: 931	n:10000
Cons ci ratio: 2.070530e-01	ci left: 3.100901e-02	ci right 3.826537e-02	k: 345	n:10000
KS ci ratio: 5.271225e-02	ci left: 3.466085e-01	ci right 3.654755e-01	k: 3560	n:10000
RNGTT   10000 perm   2 sec   (5399 perm/sec)   p_kst 3.560000e-01   p_cons 3.450000e-02   p_joint 9.310000e-02

Joint ci ratio: 7.856213e-02	ci left: 1.063343e-01	ci right 1.150793e-01	k: 2213	n:20000
Cons ci ratio: 1.536935e-01	ci left: 2.907449e-02	ci right 3.396297e-02	k: 629	n:20000
KS ci ratio: 3.759221e-02	ci left: 3.455272e-01	ci right 3.588158e-01	k: 7043	n:20000
RNGTT   20000 perm   4 sec   (4893 perm/sec)   p_kst 3.521500e-01   p_cons 3.145000e-02   p_joint 1.106500e-01

Joint ci ratio: 6.960991e-02	ci left: 9.226246e-02	ci right 9.894943e-02	k: 2867	n:30000
Cons ci ratio: 1.255598e-01	ci left: 2.948769e-02	ci right 3.347039e-02	k: 943	n:30000
KS ci ratio: 3.054870e-02	ci left: 3.489185e-01	ci right 3.597764e-01	k: 10630	n:30000
RNGTT   30000 perm   6 sec   (4684 perm/sec)   p_kst 3.543333e-01   p_cons 3.143333e-02   p_joint 9.556667e-02

Joint ci ratio: 5.337394e-02	ci left: 1.156445e-01	ci right 1.220110e-01	k: 4752	n:40000
Cons ci ratio: 1.075386e-01	ci left: 3.041851e-02	ci right 3.389984e-02	k: 1285	n:40000
KS ci ratio: 2.531435e-02	ci left: 3.700280e-01	ci right 3.795402e-01	k: 14991	n:40000
RNGTT   40000 perm   9 sec   (4505 perm/sec)   p_kst 3.747750e-01   p_cons 3.212500e-02   p_joint 1.188000e-01

Joint ci ratio: 5.531936e-02	ci left: 8.872983e-02	ci right 9.379774e-02	k: 4562	n:50000
Cons ci ratio: 9.504620e-02	ci left: 3.133413e-02	ci right 3.448041e-02	k: 1644	n:50000
KS ci ratio: 2.268441e-02	ci left: 3.696565e-01	ci right 3.781582e-01	k: 18695	n:50000
RNGTT   50000 perm   11 sec   (4379 perm/sec)   p_kst 3.739000e-01   p_cons 3.288000e-02   p_joint 9.124000e-02

Outputting figure to mutsig2_images.part000000000148/RNGTT.6_1858_50000_0.3739_0.03288_0.09124.png
                gene_name: RNGTT
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.089 
    ci_joint_bounds_right: 0.094 

Current progress: 28 percent done.
RNF145
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.767703e-02	ci left: 6.579673e-01	ci right 6.765351e-01	k: 6673	n:10000
Cons ci ratio: 4.517969e-02	ci left: 4.196701e-01	ci right 4.391710e-01	k: 4294	n:10000
KS ci ratio: 3.936692e-02	ci left: 4.879521e-01	ci right 5.076492e-01	k: 4978	n:10000
RNF145   10000 perm   2 sec   (5590 perm/sec)   p_kst 4.978000e-01   p_cons 4.294000e-01   p_joint 6.673000e-01

Outputting figure to mutsig2_images.part000000000148/RNF145.5_2120_10000_0.4978_0.4294_0.6673.png
                gene_name: RNF145
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 30 percent done.
RNF169
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.160103e-01	ci left: 6.974044e-03	ci right 1.072050e-02	k: 87	n:10000
Cons ci ratio: 4.479208e-01	ci left: 5.903663e-03	ci right 9.392367e-03	k: 75	n:10000
KS ci ratio: 1.438733e-01	ci left: 6.410846e-02	ci right 7.414431e-02	k: 690	n:10000
RNF169   10000 perm   2 sec   (5590 perm/sec)   p_kst 6.900000e-02   p_cons 7.500000e-03   p_joint 8.700000e-03

Joint ci ratio: 3.374918e-01	ci left: 5.570785e-03	ci right 7.876145e-03	k: 133	n:20000
Cons ci ratio: 3.266248e-01	ci left: 5.983476e-03	ci right 8.363189e-03	k: 142	n:20000
KS ci ratio: 1.058684e-01	ci left: 6.074404e-02	ci right 6.758334e-02	k: 1282	n:20000
RNF169   20000 perm   4 sec   (5076 perm/sec)   p_kst 6.410000e-02   p_cons 7.100000e-03   p_joint 6.650000e-03

Joint ci ratio: 2.997923e-01	ci left: 4.817905e-03	ci right 6.546609e-03	k: 169	n:30000
Cons ci ratio: 2.735157e-01	ci left: 5.870334e-03	ci right 7.760411e-03	k: 203	n:30000
KS ci ratio: 8.686461e-02	ci left: 6.079887e-02	ci right 6.635268e-02	k: 1906	n:30000
RNF169   30000 perm   6 sec   (4848 perm/sec)   p_kst 6.353333e-02   p_cons 6.766667e-03   p_joint 5.633333e-03

Joint ci ratio: 3.205363e-01	ci left: 3.128777e-03	ci right 4.345020e-03	k: 148	n:40000
Cons ci ratio: 2.301523e-01	ci left: 6.371322e-03	ci right 8.051413e-03	k: 287	n:40000
KS ci ratio: 7.500174e-02	ci left: 6.152243e-02	ci right 6.634111e-02	k: 2556	n:40000
RNF169   40000 perm   9 sec   (4695 perm/sec)   p_kst 6.390000e-02   p_cons 7.175000e-03   p_joint 3.700000e-03

Joint ci ratio: 3.407381e-01	ci left: 2.191025e-03	ci right 3.108239e-03	k: 131	n:50000
Cons ci ratio: 2.248862e-01	ci left: 5.360775e-03	ci right 6.737522e-03	k: 301	n:50000
KS ci ratio: 6.707533e-02	ci left: 6.179130e-02	ci right 6.609950e-02	k: 3196	n:50000
RNF169   50000 perm   11 sec   (4585 perm/sec)   p_kst 6.392000e-02   p_cons 6.020000e-03   p_joint 2.620000e-03

Joint ci ratio: 3.382553e-01	ci left: 1.856288e-03	ci right 2.626461e-03	k: 133	n:60000
Cons ci ratio: 2.059797e-01	ci left: 5.381914e-03	ci right 6.633261e-03	k: 359	n:60000
KS ci ratio: 6.132005e-02	ci left: 6.180797e-02	ci right 6.573435e-02	k: 3825	n:60000
RNF169   60000 perm   13 sec   (4490 perm/sec)   p_kst 6.375000e-02   p_cons 5.983333e-03   p_joint 2.216667e-03

Joint ci ratio: 3.309666e-01	ci left: 1.669589e-03	ci right 2.344190e-03	k: 139	n:70000
Cons ci ratio: 1.775635e-01	ci left: 6.300142e-03	ci right 7.541260e-03	k: 483	n:70000
KS ci ratio: 5.668779e-02	ci left: 6.212735e-02	ci right 6.576604e-02	k: 4475	n:70000
RNF169   70000 perm   16 sec   (4402 perm/sec)   p_kst 6.392857e-02   p_cons 6.900000e-03   p_joint 1.985714e-03

Joint ci ratio: 3.435251e-01	ci left: 1.346431e-03	ci right 1.915692e-03	k: 129	n:80000
Cons ci ratio: 1.661172e-01	ci left: 6.338070e-03	ci right 7.498122e-03	k: 552	n:80000
KS ci ratio: 5.300685e-02	ci left: 6.228887e-02	ci right 6.569283e-02	k: 5118	n:80000
RNF169   80000 perm   19 sec   (4321 perm/sec)   p_kst 6.397500e-02   p_cons 6.900000e-03   p_joint 1.612500e-03

Joint ci ratio: 3.334348e-01	ci left: 1.278155e-03	ci right 1.799266e-03	k: 137	n:90000
Cons ci ratio: 1.571423e-01	ci left: 6.326862e-03	ci right 7.416398e-03	k: 617	n:90000
KS ci ratio: 4.961677e-02	ci left: 6.324412e-02	ci right 6.647288e-02	k: 5836	n:90000
RNF169   90000 perm   21 sec   (4245 perm/sec)   p_kst 6.484444e-02   p_cons 6.855556e-03   p_joint 1.522222e-03

Joint ci ratio: 3.187625e-01	ci left: 1.269702e-03	ci right 1.759943e-03	k: 150	n:100000
Cons ci ratio: 1.483909e-01	ci left: 6.415544e-03	ci right 7.453365e-03	k: 692	n:100000
KS ci ratio: 4.707278e-02	ci left: 6.332143e-02	ci right 6.638387e-02	k: 6484	n:100000
RNF169   100000 perm   24 sec   (4173 perm/sec)   p_kst 6.484000e-02   p_cons 6.920000e-03   p_joint 1.500000e-03

Joint ci ratio: 3.371713e-01	ci left: 1.020762e-03	ci right 1.442607e-03	k: 134	n:110000
Cons ci ratio: 1.417006e-01	ci left: 6.419306e-03	ci right 7.406960e-03	k: 759	n:110000
KS ci ratio: 4.462350e-02	ci left: 6.408986e-02	ci right 6.702401e-02	k: 7210	n:110000
RNF169   110000 perm   27 sec   (4105 perm/sec)   p_kst 6.554545e-02   p_cons 6.900000e-03   p_joint 1.218182e-03

Joint ci ratio: 3.276101e-01	ci left: 9.968007e-04	ci right 1.394603e-03	k: 142	n:120000
Cons ci ratio: 1.351838e-01	ci left: 6.487739e-03	ci right 7.436323e-03	k: 834	n:120000
KS ci ratio: 4.270792e-02	ci left: 6.419729e-02	ci right 6.700708e-02	k: 7871	n:120000
RNF169   120000 perm   30 sec   (4040 perm/sec)   p_kst 6.559167e-02   p_cons 6.950000e-03   p_joint 1.183333e-03

Joint ci ratio: 3.156942e-01	ci left: 9.979100e-04	ci right 1.378748e-03	k: 153	n:130000
Cons ci ratio: 1.294906e-01	ci left: 6.546523e-03	ci right 7.460291e-03	k: 909	n:130000
KS ci ratio: 4.113838e-02	ci left: 6.394003e-02	ci right 6.663325e-02	k: 8486	n:130000
RNF169   130000 perm   33 sec   (3975 perm/sec)   p_kst 6.527692e-02   p_cons 6.992308e-03   p_joint 1.176923e-03

Joint ci ratio: 2.178621e-01	ci left: 2.055860e-03	ci right 2.565104e-03	k: 322	n:140000
Cons ci ratio: 1.247803e-01	ci left: 6.563018e-03	ci right 7.443301e-03	k: 979	n:140000
KS ci ratio: 3.970204e-02	ci left: 6.380609e-02	ci right 6.639768e-02	k: 9113	n:140000
RNF169   140000 perm   36 sec   (3913 perm/sec)   p_kst 6.509286e-02   p_cons 6.992857e-03   p_joint 2.300000e-03

Joint ci ratio: 2.152241e-01	ci left: 1.969234e-03	ci right 2.450332e-03	k: 330	n:150000
Cons ci ratio: 1.210144e-01	ci left: 6.526103e-03	ci right 7.373124e-03	k: 1041	n:150000
KS ci ratio: 3.840844e-02	ci left: 6.368484e-02	ci right 6.618535e-02	k: 9739	n:150000
RNF169   150000 perm   39 sec   (3855 perm/sec)   p_kst 6.492667e-02   p_cons 6.940000e-03   p_joint 2.200000e-03

Joint ci ratio: 2.078204e-01	ci left: 1.988215e-03	ci right 2.455117e-03	k: 354	n:160000
Cons ci ratio: 1.167214e-01	ci left: 6.591241e-03	ci right 7.414276e-03	k: 1119	n:160000
KS ci ratio: 3.724316e-02	ci left: 6.354898e-02	ci right 6.596682e-02	k: 10360	n:160000
RNF169   160000 perm   42 sec   (3797 perm/sec)   p_kst 6.475000e-02   p_cons 6.993750e-03   p_joint 2.212500e-03

Joint ci ratio: 2.049612e-01	ci left: 1.927038e-03	ci right 2.372566e-03	k: 364	n:170000
Cons ci ratio: 1.133323e-01	ci left: 6.592013e-03	ci right 7.389645e-03	k: 1187	n:170000
KS ci ratio: 3.604820e-02	ci left: 6.386176e-02	ci right 6.621192e-02	k: 11055	n:170000
RNF169   170000 perm   45 sec   (3737 perm/sec)   p_kst 6.502941e-02   p_cons 6.982353e-03   p_joint 2.141176e-03

Joint ci ratio: 1.341367e-01	ci left: 4.405366e-03	ci right 5.044079e-03	k: 849	n:180000
Cons ci ratio: 1.227550e-01	ci left: 5.287397e-03	ci right 5.984226e-03	k: 1013	n:180000
KS ci ratio: 3.502352e-02	ci left: 6.392598e-02	ci right 6.621028e-02	k: 11711	n:180000
RNF169   180000 perm   49 sec   (3679 perm/sec)   p_kst 6.506111e-02   p_cons 5.627778e-03   p_joint 4.716667e-03

Joint ci ratio: 1.361799e-01	ci left: 4.046324e-03	ci right 4.642639e-03	k: 824	n:190000
Cons ci ratio: 1.197249e-01	ci left: 5.274495e-03	ci right 5.951250e-03	k: 1065	n:190000
KS ci ratio: 3.410809e-02	ci left: 6.389029e-02	ci right 6.611247e-02	k: 12349	n:190000
RNF169   190000 perm   52 sec   (3624 perm/sec)   p_kst 6.499474e-02   p_cons 5.605263e-03   p_joint 4.336842e-03

Joint ci ratio: 1.471656e-01	ci left: 3.274791e-03	ci right 3.799761e-03	k: 706	n:200000
Cons ci ratio: 1.037662e-01	ci left: 6.717201e-03	ci right 7.457194e-03	k: 1416	n:200000
KS ci ratio: 3.321577e-02	ci left: 6.402261e-02	ci right 6.619002e-02	k: 13020	n:200000
RNF169   200000 perm   56 sec   (3571 perm/sec)   p_kst 6.510000e-02   p_cons 7.080000e-03   p_joint 3.530000e-03

Joint ci ratio: 1.459405e-01	ci left: 3.173883e-03	ci right 3.678072e-03	k: 718	n:210000
Cons ci ratio: 1.014666e-01	ci left: 6.698911e-03	ci right 7.419558e-03	k: 1481	n:210000
KS ci ratio: 3.242549e-02	ci left: 6.401068e-02	ci right 6.612516e-02	k: 13663	n:210000
RNF169   210000 perm   60 sec   (3527 perm/sec)   p_kst 6.506190e-02   p_cons 7.052381e-03   p_joint 3.419048e-03

Joint ci ratio: 1.439568e-01	ci left: 3.117221e-03	ci right 3.605099e-03	k: 738	n:220000
Cons ci ratio: 9.895964e-02	ci left: 6.731217e-03	ci right 7.436409e-03	k: 1557	n:220000
KS ci ratio: 3.174367e-02	ci left: 6.379284e-02	ci right 6.585501e-02	k: 14260	n:220000
RNF169   220000 perm   63 sec   (3478 perm/sec)   p_kst 6.481818e-02   p_cons 7.077273e-03   p_joint 3.354545e-03

Joint ci ratio: 1.416776e-01	ci left: 3.082305e-03	ci right 3.556435e-03	k: 762	n:230000
Cons ci ratio: 9.648120e-02	ci left: 6.782131e-03	ci right 7.473856e-03	k: 1638	n:230000
KS ci ratio: 3.107182e-02	ci left: 6.371524e-02	ci right 6.573053e-02	k: 14885	n:230000
RNF169   230000 perm   67 sec   (3432 perm/sec)   p_kst 6.471739e-02   p_cons 7.121739e-03   p_joint 3.313043e-03

Joint ci ratio: 1.427233e-01	ci left: 2.909655e-03	ci right 3.360810e-03	k: 751	n:240000
Cons ci ratio: 9.462440e-02	ci left: 6.763900e-03	ci right 7.439752e-03	k: 1703	n:240000
KS ci ratio: 3.040737e-02	ci left: 6.377693e-02	ci right 6.575027e-02	k: 15542	n:240000
RNF169   240000 perm   71 sec   (3386 perm/sec)   p_kst 6.475833e-02   p_cons 7.095833e-03   p_joint 3.129167e-03

Joint ci ratio: 1.283023e-01	ci left: 3.481259e-03	ci right 3.962360e-03	k: 929	n:250000
Cons ci ratio: 9.250289e-02	ci left: 6.801956e-03	ci right 7.465548e-03	k: 1782	n:250000
KS ci ratio: 2.979855e-02	ci left: 6.377451e-02	ci right 6.570759e-02	k: 16184	n:250000
RNF169   250000 perm   75 sec   (3342 perm/sec)   p_kst 6.473600e-02   p_cons 7.128000e-03   p_joint 3.716000e-03

Joint ci ratio: 1.281043e-01	ci left: 3.358519e-03	ci right 3.821886e-03	k: 932	n:260000
Cons ci ratio: 9.073909e-02	ci left: 6.803404e-03	ci right 7.453809e-03	k: 1852	n:260000
KS ci ratio: 2.923512e-02	ci left: 6.373063e-02	ci right 6.562524e-02	k: 16815	n:260000
RNF169   260000 perm   79 sec   (3298 perm/sec)   p_kst 6.467308e-02   p_cons 7.123077e-03   p_joint 3.584615e-03

Joint ci ratio: 1.315530e-01	ci left: 3.062093e-03	ci right 3.496825e-03	k: 884	n:270000
Cons ci ratio: 8.925967e-02	ci left: 6.775883e-03	ci right 7.412544e-03	k: 1914	n:270000
KS ci ratio: 2.775995e-02	ci left: 6.781861e-02	ci right 6.973140e-02	k: 18568	n:270000
RNF169   270000 perm   83 sec   (3246 perm/sec)   p_kst 6.877037e-02   p_cons 7.088889e-03   p_joint 3.274074e-03

Joint ci ratio: 1.296637e-01	ci left: 3.042554e-03	ci right 3.467830e-03	k: 910	n:280000
Cons ci ratio: 8.738412e-02	ci left: 6.823776e-03	ci right 7.450777e-03	k: 1997	n:280000
KS ci ratio: 2.725877e-02	ci left: 6.784031e-02	ci right 6.971863e-02	k: 19257	n:280000
RNF169   280000 perm   87 sec   (3205 perm/sec)   p_kst 6.877500e-02   p_cons 7.132143e-03   p_joint 3.250000e-03

Joint ci ratio: 1.288927e-01	ci left: 2.974336e-03	ci right 3.387415e-03	k: 921	n:290000
Cons ci ratio: 8.625043e-02	ci left: 6.767255e-03	ci right 7.380589e-03	k: 2050	n:290000
KS ci ratio: 2.679823e-02	ci left: 6.779227e-02	ci right 6.963705e-02	k: 19926	n:290000
RNF169   290000 perm   92 sec   (3165 perm/sec)   p_kst 6.871034e-02   p_cons 7.068966e-03   p_joint 3.175862e-03

Joint ci ratio: 1.271142e-01	ci left: 2.959081e-03	ci right 3.363944e-03	k: 947	n:300000
Cons ci ratio: 8.477508e-02	ci left: 6.776549e-03	ci right 7.379699e-03	k: 2122	n:300000
KS ci ratio: 2.635683e-02	ci left: 6.776424e-02	ci right 6.957743e-02	k: 20600	n:300000
RNF169   300000 perm   96 sec   (3126 perm/sec)   p_kst 6.866667e-02   p_cons 7.073333e-03   p_joint 3.156667e-03

Joint ci ratio: 1.273229e-01	ci left: 2.854248e-03	ci right 3.245456e-03	k: 944	n:310000
Cons ci ratio: 8.362270e-02	ci left: 6.744261e-03	ci right 7.335979e-03	k: 2181	n:310000
KS ci ratio: 2.591431e-02	ci left: 6.784728e-02	ci right 6.963176e-02	k: 21308	n:310000
RNF169   310000 perm   100 sec   (3090 perm/sec)   p_kst 6.873548e-02   p_cons 7.035484e-03   p_joint 3.045161e-03

Joint ci ratio: 1.424948e-01	ci left: 2.191223e-03	ci right 2.530389e-03	k: 754	n:320000
Cons ci ratio: 8.907582e-02	ci left: 5.747569e-03	ci right 6.286436e-03	k: 1924	n:320000
KS ci ratio: 2.551141e-02	ci left: 6.783528e-02	ci right 6.959129e-02	k: 21987	n:320000
RNF169   320000 perm   105 sec   (3055 perm/sec)   p_kst 6.870938e-02   p_cons 6.012500e-03   p_joint 2.356250e-03

Joint ci ratio: 1.411938e-01	ci left: 2.165739e-03	ci right 2.497642e-03	k: 768	n:330000
Cons ci ratio: 8.754198e-02	ci left: 5.774914e-03	ci right 6.306544e-03	k: 1992	n:330000
KS ci ratio: 2.514222e-02	ci left: 6.774588e-02	ci right 6.947383e-02	k: 22640	n:330000
RNF169   330000 perm   109 sec   (3020 perm/sec)   p_kst 6.860606e-02   p_cons 6.036364e-03   p_joint 2.327273e-03

Joint ci ratio: 1.409234e-01	ci left: 2.110549e-03	ci right 2.433322e-03	k: 771	n:340000
Cons ci ratio: 8.610575e-02	ci left: 5.797846e-03	ci right 6.322391e-03	k: 2059	n:340000
KS ci ratio: 2.477320e-02	ci left: 6.774086e-02	ci right 6.944297e-02	k: 23320	n:340000
RNF169   340000 perm   114 sec   (2984 perm/sec)   p_kst 6.858824e-02   p_cons 6.055882e-03   p_joint 2.267647e-03

Joint ci ratio: 1.430801e-01	ci left: 1.986859e-03	ci right 2.295763e-03	k: 748	n:350000
Cons ci ratio: 8.485847e-02	ci left: 5.802754e-03	ci right 6.319761e-03	k: 2120	n:350000
KS ci ratio: 2.440414e-02	ci left: 6.781870e-02	ci right 6.949702e-02	k: 24029	n:350000
RNF169   350000 perm   119 sec   (2952 perm/sec)   p_kst 6.865429e-02   p_cons 6.057143e-03   p_joint 2.137143e-03

Joint ci ratio: 1.412997e-01	ci left: 1.982568e-03	ci right 2.286646e-03	k: 767	n:360000
Cons ci ratio: 8.385742e-02	ci left: 5.780242e-03	ci right 6.288870e-03	k: 2171	n:360000
KS ci ratio: 2.406938e-02	ci left: 6.779571e-02	ci right 6.945013e-02	k: 24703	n:360000
RNF169   360000 perm   123 sec   (2919 perm/sec)   p_kst 6.861944e-02   p_cons 6.030556e-03   p_joint 2.130556e-03

Joint ci ratio: 1.397621e-01	ci left: 1.973315e-03	ci right 2.272406e-03	k: 784	n:370000
Cons ci ratio: 8.274131e-02	ci left: 5.780156e-03	ci right 6.281681e-03	k: 2230	n:370000
KS ci ratio: 2.371844e-02	ci left: 6.793270e-02	ci right 6.956596e-02	k: 25436	n:370000
RNF169   370000 perm   128 sec   (2887 perm/sec)   p_kst 6.874595e-02   p_cons 6.027027e-03   p_joint 2.118919e-03

Joint ci ratio: 1.144746e-01	ci left: 2.900165e-03	ci right 3.254848e-03	k: 1168	n:380000
Cons ci ratio: 8.165068e-02	ci left: 5.782696e-03	ci right 6.277513e-03	k: 2290	n:380000
KS ci ratio: 2.341173e-02	ci left: 6.790298e-02	ci right 6.951413e-02	k: 26108	n:380000
RNF169   380000 perm   133 sec   (2855 perm/sec)   p_kst 6.870526e-02   p_cons 6.026316e-03   p_joint 3.073684e-03

Joint ci ratio: 1.138460e-01	ci left: 2.858180e-03	ci right 3.205679e-03	k: 1181	n:390000
Cons ci ratio: 8.068844e-02	ci left: 5.772584e-03	ci right 6.260440e-03	k: 2345	n:390000
KS ci ratio: 2.311244e-02	ci left: 6.789787e-02	ci right 6.948803e-02	k: 26789	n:390000
RNF169   390000 perm   138 sec   (2824 perm/sec)   p_kst 6.868974e-02   p_cons 6.012821e-03   p_joint 3.028205e-03

Joint ci ratio: 1.142875e-01	ci left: 2.764860e-03	ci right 3.102405e-03	k: 1172	n:400000
Cons ci ratio: 7.959286e-02	ci left: 5.787514e-03	ci right 6.269683e-03	k: 2410	n:400000
KS ci ratio: 2.281989e-02	ci left: 6.791801e-02	ci right 6.948824e-02	k: 27480	n:400000
RNF169   400000 perm   143 sec   (2793 perm/sec)   p_kst 6.870000e-02   p_cons 6.025000e-03   p_joint 2.930000e-03

Joint ci ratio: 1.139511e-01	ci left: 2.714006e-03	ci right 3.044301e-03	k: 1179	n:410000
Cons ci ratio: 7.855668e-02	ci left: 5.799368e-03	ci right 6.275947e-03	k: 2474	n:410000
KS ci ratio: 2.253474e-02	ci left: 6.795670e-02	ci right 6.950794e-02	k: 28179	n:410000
RNF169   410000 perm   149 sec   (2749 perm/sec)   p_kst 6.872927e-02   p_cons 6.034146e-03   p_joint 2.875610e-03

Joint ci ratio: 1.148367e-01	ci left: 2.607748e-03	ci right 2.927745e-03	k: 1161	n:420000
Cons ci ratio: 7.785356e-02	ci left: 5.766331e-03	ci right 6.235761e-03	k: 2519	n:420000
KS ci ratio: 2.227617e-02	ci left: 6.790128e-02	ci right 6.943325e-02	k: 28839	n:420000
RNF169   420000 perm   154 sec   (2720 perm/sec)   p_kst 6.866429e-02   p_cons 5.997619e-03   p_joint 2.764286e-03

Joint ci ratio: 1.179873e-01	ci left: 2.409357e-03	ci right 2.713686e-03	k: 1100	n:430000
Cons ci ratio: 7.691298e-02	ci left: 5.773627e-03	ci right 6.237719e-03	k: 2581	n:430000
KS ci ratio: 2.201229e-02	ci left: 6.792952e-02	ci right 6.944374e-02	k: 29534	n:430000
RNF169   430000 perm   160 sec   (2688 perm/sec)   p_kst 6.868372e-02   p_cons 6.002326e-03   p_joint 2.558140e-03

Joint ci ratio: 1.166702e-01	ci left: 2.409750e-03	ci right 2.710497e-03	k: 1125	n:440000
Cons ci ratio: 7.599123e-02	ci left: 5.782854e-03	ci right 6.241870e-03	k: 2644	n:440000
KS ci ratio: 2.178389e-02	ci left: 6.780282e-02	ci right 6.929833e-02	k: 30161	n:440000
RNF169   440000 perm   165 sec   (2660 perm/sec)   p_kst 6.854773e-02   p_cons 6.009091e-03   p_joint 2.556818e-03

Joint ci ratio: 1.162602e-01	ci left: 2.373457e-03	ci right 2.668562e-03	k: 1133	n:450000
Cons ci ratio: 7.517169e-02	ci left: 5.780798e-03	ci right 6.234486e-03	k: 2702	n:450000
KS ci ratio: 2.152868e-02	ci left: 6.788082e-02	ci right 6.936030e-02	k: 30878	n:450000
RNF169   450000 perm   171 sec   (2634 perm/sec)   p_kst 6.861778e-02   p_cons 6.004444e-03   p_joint 2.517778e-03

Joint ci ratio: 1.147516e-01	ci left: 2.385194e-03	ci right 2.677650e-03	k: 1163	n:460000
Cons ci ratio: 7.431044e-02	ci left: 5.789527e-03	ci right 6.238469e-03	k: 2765	n:460000
KS ci ratio: 2.129999e-02	ci left: 6.784954e-02	ci right 6.931243e-02	k: 31546	n:460000
RNF169   460000 perm   176 sec   (2608 perm/sec)   p_kst 6.857826e-02   p_cons 6.010870e-03   p_joint 2.528261e-03

Joint ci ratio: 1.175728e-01	ci left: 2.220813e-03	ci right 2.500272e-03	k: 1108	n:470000
Cons ci ratio: 7.366173e-02	ci left: 5.768669e-03	ci right 6.211922e-03	k: 2814	n:470000
KS ci ratio: 2.107807e-02	ci left: 6.782178e-02	ci right 6.926865e-02	k: 32215	n:470000
RNF169   470000 perm   182 sec   (2582 perm/sec)   p_kst 6.854255e-02   p_cons 5.987234e-03   p_joint 2.357447e-03

Joint ci ratio: 1.171004e-01	ci left: 2.192744e-03	ci right 2.467485e-03	k: 1117	n:480000
Cons ci ratio: 7.297846e-02	ci left: 5.756880e-03	ci right 6.194949e-03	k: 2867	n:480000
KS ci ratio: 2.085410e-02	ci left: 6.784916e-02	ci right 6.928105e-02	k: 32910	n:480000
RNF169   480000 perm   188 sec   (2555 perm/sec)   p_kst 6.856250e-02   p_cons 5.972917e-03   p_joint 2.327083e-03

Joint ci ratio: 9.774787e-02	ci left: 3.111475e-03	ci right 3.433218e-03	k: 1602	n:490000
Cons ci ratio: 7.210308e-02	ci left: 5.779660e-03	ci right 6.213967e-03	k: 2937	n:490000
KS ci ratio: 2.064702e-02	ci left: 6.781457e-02	ci right 6.923135e-02	k: 33575	n:490000
RNF169   490000 perm   194 sec   (2530 perm/sec)   p_kst 6.852041e-02   p_cons 5.993878e-03   p_joint 3.269388e-03

Outputting figure to mutsig2_images.part000000000148/RNF169.5_2151_490000_0.06852_0.0059939_0.0032694.png
                gene_name: RNF169
               theta_stop: 0.098 
                    nperm: 490000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.0060 
      ci_cons_bounds_left: 0.0058 
     ci_cons_bounds_right: 0.0062 
                  p_joint: 0.0033 
     ci_joint_bounds_left: 0.0031 
    ci_joint_bounds_right: 0.0034 

Current progress: 32 percent done.
RNF214
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.429399e-02	ci left: 1.702525e-01	ci right 1.853357e-01	k: 1777	n:10000
Cons ci ratio: 4.713205e-02	ci left: 3.991423e-01	ci right 4.185108e-01	k: 4088	n:10000
KS ci ratio: 9.735533e-02	ci left: 1.326671e-01	ci right 1.463436e-01	k: 1394	n:10000
RNF214   10000 perm   2 sec   (5487 perm/sec)   p_kst 1.394000e-01   p_cons 4.088000e-01   p_joint 1.777000e-01

Outputting figure to mutsig2_images.part000000000148/RNF214.5_2168_10000_0.1394_0.4088_0.1777.png
                gene_name: RNF214
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 34 percent done.
RNF40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.774850e-02	ci left: 8.223902e-01	ci right 8.372171e-01	k: 8299	n:10000
Cons ci ratio: 5.856484e-02	ci left: 3.002475e-01	ci right 3.184636e-01	k: 3093	n:10000
KS ci ratio: 1.571331e-02	ci left: 8.546766e-01	ci right 8.683121e-01	k: 8616	n:10000
RNF40   10000 perm   2 sec   (5382 perm/sec)   p_kst 8.616000e-01   p_cons 3.093000e-01   p_joint 8.299000e-01

Outputting figure to mutsig2_images.part000000000148/RNF40.5_3082_10000_0.8616_0.3093_0.8299.png
                gene_name: RNF40
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 36 percent done.
ROBO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.835916e-02	ci left: 6.469974e-01	ci right 6.657114e-01	k: 6564	n:10000
Cons ci ratio: 2.197400e-02	ci left: 7.524148e-01	ci right 7.692330e-01	k: 7609	n:10000
KS ci ratio: 3.728142e-02	ci left: 5.151564e-01	ci right 5.348291e-01	k: 5250	n:10000
ROBO3   10000 perm   2 sec   (5096 perm/sec)   p_kst 5.250000e-01   p_cons 7.609000e-01   p_joint 6.564000e-01

Outputting figure to mutsig2_images.part000000000148/ROBO3.5_4273_10000_0.525_0.7609_0.6564.png
                gene_name: ROBO3
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 38 percent done.
ROBO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.707555e-02	ci left: 1.975185e-01	ci right 2.134534e-01	k: 2054	n:10000
Cons ci ratio: 3.164444e-02	ci left: 5.957408e-01	ci right 6.149978e-01	k: 6054	n:10000
KS ci ratio: 1.357136e-01	ci left: 7.175179e-02	ci right 8.229618e-02	k: 769	n:10000
ROBO4   10000 perm   2 sec   (5180 perm/sec)   p_kst 7.690000e-02   p_cons 6.054000e-01   p_joint 2.054000e-01

Joint ci ratio: 6.500385e-02	ci left: 1.488258e-01	ci right 1.588750e-01	k: 3076	n:20000
Cons ci ratio: 2.094163e-02	ci left: 6.298896e-01	ci right 6.432706e-01	k: 12732	n:20000
KS ci ratio: 9.633930e-02	ci left: 7.275530e-02	ci right 8.016840e-02	k: 1528	n:20000
ROBO4   20000 perm   4 sec   (4680 perm/sec)   p_kst 7.640000e-02   p_cons 6.366000e-01   p_joint 1.538000e-01

Outputting figure to mutsig2_images.part000000000148/ROBO4.5_3096_20000_0.0764_0.6366_0.1538.png
                gene_name: ROBO4
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 40 percent done.
RNF130
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.936231e-03	ci left: 9.348550e-01	ci right 9.442869e-01	k: 9397	n:10000
Cons ci ratio: 2.759606e-02	ci left: 6.592760e-01	ci right 6.778257e-01	k: 6686	n:10000
KS ci ratio: 1.811177e-02	ci left: 8.164937e-01	ci right 8.315171e-01	k: 8241	n:10000
RNF130   10000 perm   2 sec   (5910 perm/sec)   p_kst 8.241000e-01   p_cons 6.686000e-01   p_joint 9.397000e-01

Outputting figure to mutsig2_images.part000000000148/RNF130.4_1296_10000_0.8241_0.6686_0.9397.png
                gene_name: RNF130
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 42 percent done.
RNF165
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.633875e-02	ci left: 1.634706e-01	ci right 1.783216e-01	k: 1708	n:10000
Cons ci ratio: 1.281149e-01	ci left: 8.009076e-02	ci right 9.115204e-02	k: 855	n:10000
KS ci ratio: 5.449446e-02	ci left: 3.316070e-01	ci right 3.502858e-01	k: 3409	n:10000
RNF165   10000 perm   2 sec   (6005 perm/sec)   p_kst 3.409000e-01   p_cons 8.550000e-02   p_joint 1.708000e-01

Joint ci ratio: 6.548238e-02	ci left: 1.469515e-01	ci right 1.569499e-01	k: 3038	n:20000
Cons ci ratio: 9.246592e-02	ci left: 7.862504e-02	ci right 8.629687e-02	k: 1648	n:20000
KS ci ratio: 3.846488e-02	ci left: 3.351751e-01	ci right 3.483709e-01	k: 6835	n:20000
RNF165   20000 perm   4 sec   (5371 perm/sec)   p_kst 3.417500e-01   p_cons 8.240000e-02   p_joint 1.519000e-01

Outputting figure to mutsig2_images.part000000000148/RNF165.4_1073_20000_0.34175_0.0824_0.1519.png
                gene_name: RNF165
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 43 percent done.
RNF175
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.026335e-01	ci left: 1.207287e-01	ci right 1.338892e-01	k: 1272	n:10000
Cons ci ratio: 1.650363e-01	ci left: 4.897794e-02	ci right 5.788448e-02	k: 533	n:10000
KS ci ratio: 5.958053e-02	ci left: 2.930100e-01	ci right 3.111054e-01	k: 3020	n:10000
RNF175   10000 perm   2 sec   (5855 perm/sec)   p_kst 3.020000e-01   p_cons 5.330000e-02   p_joint 1.272000e-01

Joint ci ratio: 6.844317e-02	ci left: 1.360564e-01	ci right 1.457483e-01	k: 2817	n:20000
Cons ci ratio: 1.200634e-01	ci left: 4.755432e-02	ci right 5.367717e-02	k: 1011	n:20000
KS ci ratio: 4.196071e-02	ci left: 2.973805e-01	ci right 3.101766e-01	k: 6075	n:20000
RNF175   20000 perm   4 sec   (5286 perm/sec)   p_kst 3.037500e-01   p_cons 5.055000e-02   p_joint 1.408500e-01

Joint ci ratio: 5.619379e-02	ci left: 1.356307e-01	ci right 1.435059e-01	k: 4186	n:30000
Cons ci ratio: 9.903252e-02	ci left: 4.717018e-02	ci right 5.211750e-02	k: 1488	n:30000
KS ci ratio: 3.423114e-02	ci left: 2.989301e-01	ci right 3.093745e-01	k: 9124	n:30000
RNF175   30000 perm   6 sec   (5053 perm/sec)   p_kst 3.041333e-01   p_cons 4.960000e-02   p_joint 1.395333e-01

Outputting figure to mutsig2_images.part000000000148/RNF175.4_1023_30000_0.30413_0.0496_0.13953.png
                gene_name: RNF175
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 45 percent done.
RNF19A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.568101e-02	ci left: 4.142874e-01	ci right 4.337569e-01	k: 4240	n:10000
Cons ci ratio: 6.677346e-02	ci left: 2.476661e-01	ci right 2.648761e-01	k: 2562	n:10000
KS ci ratio: 5.948178e-02	ci left: 2.937039e-01	ci right 3.118111e-01	k: 3027	n:10000
RNF19A   10000 perm   2 sec   (5650 perm/sec)   p_kst 3.027000e-01   p_cons 2.562000e-01   p_joint 4.240000e-01

Outputting figure to mutsig2_images.part000000000148/RNF19A.4_2553_10000_0.3027_0.2562_0.424.png
                gene_name: RNF19A
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 47 percent done.
RNF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.910361e-02	ci left: 2.963806e-01	ci right 3.145329e-01	k: 3054	n:10000
Cons ci ratio: 1.591398e-01	ci left: 5.263174e-02	ci right 6.182831e-02	k: 571	n:10000
KS ci ratio: 1.991251e-02	ci left: 7.868508e-01	ci right 8.027771e-01	k: 7949	n:10000
RNF2   10000 perm   2 sec   (6079 perm/sec)   p_kst 7.949000e-01   p_cons 5.710000e-02   p_joint 3.054000e-01

Joint ci ratio: 2.420154e-02	ci left: 5.604993e-01	ci right 5.742811e-01	k: 11348	n:20000
Cons ci ratio: 1.100038e-01	ci left: 5.640686e-02	ci right 6.302186e-02	k: 1193	n:20000
KS ci ratio: 1.422024e-02	ci left: 7.859542e-01	ci right 7.972608e-01	k: 15833	n:20000
RNF2   20000 perm   4 sec   (5439 perm/sec)   p_kst 7.916500e-01   p_cons 5.965000e-02   p_joint 5.674000e-01

Joint ci ratio: 3.081760e-02	ci left: 3.449329e-01	ci right 3.557628e-01	k: 10510	n:30000
Cons ci ratio: 8.987175e-02	ci left: 5.694711e-02	ci right 6.233856e-02	k: 1788	n:30000
KS ci ratio: 1.162891e-02	ci left: 7.864887e-01	ci right 7.957215e-01	k: 23734	n:30000
RNF2   30000 perm   6 sec   (5163 perm/sec)   p_kst 7.911333e-01   p_cons 5.960000e-02   p_joint 3.503333e-01

Outputting figure to mutsig2_images.part000000000148/RNF2.4_1035_30000_0.79113_0.0596_0.35033.png
                gene_name: RNF2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 49 percent done.
RNMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.090974e-02	ci left: 7.702306e-01	ci right 7.866069e-01	k: 7785	n:10000
KS ci ratio: 1.506850e-02	ci left: 8.645785e-01	ci right 8.778045e-01	k: 8713	n:10000
RNMT   10000 perm   2 sec   (6101 perm/sec)   p_kst 8.713000e-01   p_cons 7.785000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000148/RNMT.4_1471_10000_0.8713_0.7785_1.png
                gene_name: RNMT
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
RNPEP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.312415e-01	ci left: 7.650089e-02	ci right 8.734413e-02	k: 818	n:10000
Cons ci ratio: 1.522044e-01	ci left: 5.744795e-02	ci right 6.700903e-02	k: 621	n:10000
KS ci ratio: 1.191234e-01	ci left: 9.185115e-02	ci right 1.035844e-01	k: 976	n:10000
RNPEP   10000 perm   2 sec   (5791 perm/sec)   p_kst 9.760000e-02   p_cons 6.210000e-02   p_joint 8.180000e-02

Joint ci ratio: 1.146732e-01	ci left: 5.202621e-02	ci right 5.840388e-02	k: 1103	n:20000
Cons ci ratio: 1.114503e-01	ci left: 5.499471e-02	ci right 6.153445e-02	k: 1164	n:20000
KS ci ratio: 8.122727e-02	ci left: 1.000476e-01	ci right 1.085678e-01	k: 2085	n:20000
RNPEP   20000 perm   4 sec   (5215 perm/sec)   p_kst 1.042500e-01   p_cons 5.820000e-02   p_joint 5.515000e-02

Joint ci ratio: 8.686461e-02	ci left: 6.079887e-02	ci right 6.635268e-02	k: 1906	n:30000
Cons ci ratio: 9.035612e-02	ci left: 5.635984e-02	ci right 6.172595e-02	k: 1770	n:30000
KS ci ratio: 6.638144e-02	ci left: 1.006660e-01	ci right 1.076108e-01	k: 3123	n:30000
RNPEP   30000 perm   6 sec   (4982 perm/sec)   p_kst 1.041000e-01   p_cons 5.900000e-02   p_joint 6.353333e-02

Outputting figure to mutsig2_images.part000000000148/RNPEP.4_1997_30000_0.1041_0.059_0.063533.png
                gene_name: RNPEP
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.066 

Current progress: 53 percent done.
RNF113B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.798932e-02	ci left: 1.582644e-01	ci right 1.729310e-01	k: 1655	n:10000
Cons ci ratio: 9.194552e-02	ci left: 1.466828e-01	ci right 1.609195e-01	k: 1537	n:10000
KS ci ratio: 1.044270e-01	ci left: 1.170141e-01	ci right 1.300061e-01	k: 1234	n:10000
RNF113B   10000 perm   2 sec   (6588 perm/sec)   p_kst 1.234000e-01   p_cons 1.537000e-01   p_joint 1.655000e-01

Joint ci ratio: 6.536829e-02	ci left: 1.473954e-01	ci right 1.574059e-01	k: 3047	n:20000
Cons ci ratio: 6.402310e-02	ci left: 1.527726e-01	ci right 1.629270e-01	k: 3156	n:20000
KS ci ratio: 7.346958e-02	ci left: 1.200034e-01	ci right 1.292060e-01	k: 2491	n:20000
RNF113B   20000 perm   3 sec   (5827 perm/sec)   p_kst 1.245500e-01   p_cons 1.578000e-01   p_joint 1.523500e-01

Outputting figure to mutsig2_images.part000000000148/RNF113B.3_977_20000_0.12455_0.1578_0.15235.png
                gene_name: RNF113B
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 55 percent done.
RNF122
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.823758e-02	ci left: 3.026276e-01	ci right 3.208822e-01	k: 3117	n:10000
Cons ci ratio: 2.165393e-02	ci left: 7.577777e-01	ci right 7.744670e-01	k: 7662	n:10000
KS ci ratio: 7.719376e-02	ci left: 1.970258e-01	ci right 2.129464e-01	k: 2049	n:10000
RNF122   10000 perm   2 sec   (6584 perm/sec)   p_kst 2.049000e-01   p_cons 7.662000e-01   p_joint 3.117000e-01

Outputting figure to mutsig2_images.part000000000148/RNF122.3_492_10000_0.2049_0.7662_0.3117.png
                gene_name: RNF122
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 57 percent done.
RNF157
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.453391e-03	ci left: 9.703722e-01	ci right 9.767479e-01	k: 9737	n:10000
Cons ci ratio: 1.259363e-02	ci left: 9.006249e-01	ci right 9.121371e-01	k: 9065	n:10000
KS ci ratio: 2.344045e-02	ci left: 7.278487e-01	ci right 7.452133e-01	k: 7366	n:10000
RNF157   10000 perm   2 sec   (6413 perm/sec)   p_kst 7.366000e-01   p_cons 9.065000e-01   p_joint 9.737000e-01

Outputting figure to mutsig2_images.part000000000148/RNF157.3_2116_10000_0.7366_0.9065_0.9737.png
                gene_name: RNF157
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 58 percent done.
RNF180
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.180047e-02	ci left: 2.779488e-01	ci right 2.957755e-01	k: 2868	n:10000
Cons ci ratio: 1.498109e-02	ci left: 8.659064e-01	ci right 8.790757e-01	k: 8726	n:10000
KS ci ratio: 1.111580e-01	ci left: 1.044194e-01	ci right 1.168085e-01	k: 1105	n:10000
RNF180   10000 perm   1 sec   (6697 perm/sec)   p_kst 1.105000e-01   p_cons 8.726000e-01   p_joint 2.868000e-01

Joint ci ratio: 4.044354e-02	ci left: 3.130891e-01	ci right 3.260634e-01	k: 6391	n:20000
Cons ci ratio: 1.027073e-02	ci left: 8.747048e-01	ci right 8.837846e-01	k: 17586	n:20000
KS ci ratio: 7.808702e-02	ci left: 1.075135e-01	ci right 1.162997e-01	k: 2237	n:20000
RNF180   20000 perm   3 sec   (5907 perm/sec)   p_kst 1.118500e-01   p_cons 8.793000e-01   p_joint 3.195500e-01

Outputting figure to mutsig2_images.part000000000148/RNF180.3_1831_20000_0.11185_0.8793_0.31955.png
                gene_name: RNF180
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 60 percent done.
RNF182
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.016730e-02	ci left: 6.184406e-01	ci right 6.374848e-01	k: 6280	n:10000
Cons ci ratio: 6.767870e-02	ci left: 2.426241e-01	ci right 2.597210e-01	k: 2511	n:10000
KS ci ratio: 3.217011e-02	ci left: 5.878110e-01	ci right 6.071321e-01	k: 5975	n:10000
RNF182   10000 perm   1 sec   (6798 perm/sec)   p_kst 5.975000e-01   p_cons 2.511000e-01   p_joint 6.280000e-01

Outputting figure to mutsig2_images.part000000000148/RNF182.3_748_10000_0.5975_0.2511_0.628.png
                gene_name: RNF182
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 62 percent done.
RNF19B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.321015e-02	ci left: 3.423355e-01	ci right 3.611510e-01	k: 3517	n:10000
Cons ci ratio: 5.282739e-02	ci left: 3.456147e-01	ci right 3.644699e-01	k: 3550	n:10000
KS ci ratio: 7.523615e-02	ci left: 2.054042e-01	ci right 2.215630e-01	k: 2134	n:10000
RNF19B   10000 perm   2 sec   (6038 perm/sec)   p_kst 2.134000e-01   p_cons 3.550000e-01   p_joint 3.517000e-01

Outputting figure to mutsig2_images.part000000000148/RNF19B.3_2261_10000_0.2134_0.355_0.3517.png
                gene_name: RNF19B
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 64 percent done.
RNF217
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.029653e-02	ci left: 6.164309e-01	ci right 6.354957e-01	k: 6260	n:10000
KS ci ratio: 2.308428e-02	ci left: 7.338101e-01	ci right 7.510485e-01	k: 7425	n:10000
RNF217   10000 perm   2 sec   (6646 perm/sec)   p_kst 7.425000e-01   p_cons 6.260000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000148/RNF217.3_856_10000_0.7425_0.626_1.png
                gene_name: RNF217
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
RNF25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.686016e-02	ci left: 4.019315e-01	ci right 4.213200e-01	k: 4116	n:10000
Cons ci ratio: 1.925724e-02	ci left: 7.977051e-01	ci right 8.133165e-01	k: 8056	n:10000
KS ci ratio: 1.034263e-01	ci left: 1.190667e-01	ci right 1.321523e-01	k: 1255	n:10000
RNF25   10000 perm   2 sec   (6263 perm/sec)   p_kst 1.255000e-01   p_cons 8.056000e-01   p_joint 4.116000e-01

Joint ci ratio: 3.764169e-02	ci left: 3.449299e-01	ci right 3.582133e-01	k: 7031	n:20000
Cons ci ratio: 1.365790e-02	ci left: 7.990862e-01	ci right 8.101251e-01	k: 16093	n:20000
KS ci ratio: 7.280364e-02	ci left: 1.219718e-01	ci right 1.312370e-01	k: 2531	n:20000
RNF25   20000 perm   4 sec   (5395 perm/sec)   p_kst 1.265500e-01   p_cons 8.046500e-01   p_joint 3.515500e-01

Outputting figure to mutsig2_images.part000000000148/RNF25.3_1420_20000_0.12655_0.80465_0.35155.png
                gene_name: RNF25
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 68 percent done.
RNF115
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.450369e-02	ci left: 5.536120e-01	ci right 5.731511e-01	k: 5634	n:10000
Cons ci ratio: 5.794040e-02	ci left: 3.048095e-01	ci right 3.230990e-01	k: 3139	n:10000
KS ci ratio: 4.302484e-02	ci left: 4.437074e-01	ci right 4.633197e-01	k: 4535	n:10000
RNF115   10000 perm   1 sec   (6944 perm/sec)   p_kst 4.535000e-01   p_cons 3.139000e-01   p_joint 5.634000e-01

Outputting figure to mutsig2_images.part000000000148/RNF115.2_951_10000_0.4535_0.3139_0.5634.png
                gene_name: RNF115
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 70 percent done.
RNF133
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.349480e-02	ci left: 7.269395e-01	ci right 7.443230e-01	k: 7357	n:10000
Cons ci ratio: 3.398767e-02	ci left: 5.610295e-01	ci right 5.805293e-01	k: 5708	n:10000
KS ci ratio: 2.871198e-02	ci left: 6.413636e-01	ci right 6.601485e-01	k: 6508	n:10000
RNF133   10000 perm   1 sec   (6698 perm/sec)   p_kst 6.508000e-01   p_cons 5.708000e-01   p_joint 7.357000e-01

Outputting figure to mutsig2_images.part000000000148/RNF133.2_1135_10000_0.6508_0.5708_0.7357.png
                gene_name: RNF133
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 72 percent done.
RNF135
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.784546e-02	ci left: 6.552495e-01	ci right 6.738545e-01	k: 6646	n:10000
Cons ci ratio: 9.408979e-03	ci left: 9.409733e-01	ci right 9.499650e-01	k: 9456	n:10000
KS ci ratio: 5.516803e-02	ci left: 3.261455e-01	ci right 3.447505e-01	k: 3354	n:10000
RNF135   10000 perm   2 sec   (6617 perm/sec)   p_kst 3.354000e-01   p_cons 9.456000e-01   p_joint 6.646000e-01

Outputting figure to mutsig2_images.part000000000148/RNF135.2_1388_10000_0.3354_0.9456_0.6646.png
                gene_name: RNF135
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 74 percent done.
RNF14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.051572e-03	ci left: 9.555548e-01	ci right 9.633747e-01	k: 9596	n:10000
KS ci ratio: 1.286641e-02	ci left: 8.968261e-01	ci right 9.085381e-01	k: 9028	n:10000
RNF14   10000 perm   2 sec   (6559 perm/sec)   p_kst 9.028000e-01   p_cons 9.596000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000148/RNF14.2_1453_10000_0.9028_0.9596_1.png
                gene_name: RNF14
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
RNF141
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.920196e-02	ci left: 4.900514e-01	ci right 5.097486e-01	k: 4999	n:10000
Cons ci ratio: 6.129090e-02	ci left: 2.813167e-01	ci right 2.992056e-01	k: 2902	n:10000
KS ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
RNF141   10000 perm   1 sec   (7279 perm/sec)   p_kst 3.199000e-01   p_cons 2.902000e-01   p_joint 4.999000e-01

Outputting figure to mutsig2_images.part000000000148/RNF141.2_713_10000_0.3199_0.2902_0.4999.png
                gene_name: RNF141
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 77 percent done.
RNF146
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.410615e-02	ci left: 8.789942e-01	ci right 8.915804e-01	k: 8854	n:10000
Cons ci ratio: 3.094692e-02	ci left: 6.063849e-01	ci right 6.255475e-01	k: 6160	n:10000
KS ci ratio: 4.378784e-02	ci left: 4.350274e-01	ci right 4.546048e-01	k: 4448	n:10000
RNF146   10000 perm   1 sec   (6764 perm/sec)   p_kst 4.448000e-01   p_cons 6.160000e-01   p_joint 8.854000e-01

Outputting figure to mutsig2_images.part000000000148/RNF146.2_1081_10000_0.4448_0.616_0.8854.png
                gene_name: RNF146
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 79 percent done.
RNF152
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.496089e-02	ci left: 8.662129e-01	ci right 8.793691e-01	k: 8729	n:10000
Cons ci ratio: 2.366395e-02	ci left: 7.241112e-01	ci right 7.415529e-01	k: 7329	n:10000
KS ci ratio: 4.889213e-02	ci left: 3.816178e-01	ci right 4.008456e-01	k: 3912	n:10000
RNF152   10000 perm   1 sec   (6959 perm/sec)   p_kst 3.912000e-01   p_cons 7.329000e-01   p_joint 8.729000e-01

Outputting figure to mutsig2_images.part000000000148/RNF152.2_616_10000_0.3912_0.7329_0.8729.png
                gene_name: RNF152
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 81 percent done.
RNF167
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.280251e-02	ci left: 5.783790e-01	ci right 5.977697e-01	k: 5881	n:10000
KS ci ratio: 5.624939e-02	ci left: 3.176084e-01	ci right 3.360925e-01	k: 3268	n:10000
RNF167   10000 perm   1 sec   (7028 perm/sec)   p_kst 3.268000e-01   p_cons 5.881000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000148/RNF167.2_1089_10000_0.3268_0.5881_1.png
                gene_name: RNF167
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
RNF212
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.536699e-02	ci left: 2.557759e-01	ci right 2.731615e-01	k: 2644	n:10000
Cons ci ratio: 3.564690e-02	ci left: 5.374815e-01	ci right 5.570909e-01	k: 5473	n:10000
KS ci ratio: 1.569683e-01	ci left: 5.407563e-02	ci right 6.338351e-02	k: 586	n:10000
RNF212   10000 perm   1 sec   (6850 perm/sec)   p_kst 5.860000e-02   p_cons 5.473000e-01   p_joint 2.644000e-01

Joint ci ratio: 6.049737e-02	ci left: 1.682252e-01	ci right 1.787699e-01	k: 3469	n:20000
Cons ci ratio: 2.481606e-02	ci left: 5.481300e-01	ci right 5.619540e-01	k: 11101	n:20000
KS ci ratio: 1.093238e-01	ci left: 5.708878e-02	ci right 6.373973e-02	k: 1207	n:20000
RNF212   20000 perm   3 sec   (6052 perm/sec)   p_kst 6.035000e-02   p_cons 5.550500e-01   p_joint 1.734500e-01

Joint ci ratio: 3.609501e-02	ci left: 2.770785e-01	ci right 2.872970e-01	k: 8465	n:30000
Cons ci ratio: 2.010249e-02	ci left: 5.533261e-01	ci right 5.645958e-01	k: 16769	n:30000
KS ci ratio: 9.117969e-02	ci left: 5.538123e-02	ci right 6.070477e-02	k: 1740	n:30000
RNF212   30000 perm   5 sec   (5746 perm/sec)   p_kst 5.800000e-02   p_cons 5.589667e-01   p_joint 2.821667e-01

Outputting figure to mutsig2_images.part000000000148/RNF212.2_934_30000_0.058_0.55897_0.28217.png
                gene_name: RNF212
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 85 percent done.
RNF216
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.317620e-02	ci left: 5.728619e-01	ci right 5.922899e-01	k: 5826	n:10000
Cons ci ratio: 1.657893e-02	ci left: 8.411177e-01	ci right 8.552788e-01	k: 8483	n:10000
KS ci ratio: 5.844174e-02	ci left: 3.011400e-01	ci right 3.193706e-01	k: 3102	n:10000
RNF216   10000 perm   2 sec   (5905 perm/sec)   p_kst 3.102000e-01   p_cons 8.483000e-01   p_joint 5.826000e-01

Outputting figure to mutsig2_images.part000000000148/RNF216.2_2836_10000_0.3102_0.8483_0.5826.png
                gene_name: RNF216
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 87 percent done.
RNF31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.170498e-02	ci left: 9.126559e-01	ci right 9.234991e-01	k: 9182	n:10000
KS ci ratio: 3.110410e-02	ci left: 6.039745e-01	ci right 6.231593e-01	k: 6136	n:10000
RNF31   10000 perm   2 sec   (5706 perm/sec)   p_kst 6.136000e-01   p_cons 9.182000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000148/RNF31.2_3303_10000_0.6136_0.9182_1.png
                gene_name: RNF31
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
RNF32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.353627e-02	ci left: 2.668589e-01	ci right 2.844719e-01	k: 2756	n:10000
Cons ci ratio: 1.050099e-01	ci left: 1.158415e-01	ci right 1.287794e-01	k: 1222	n:10000
KS ci ratio: 3.220355e-02	ci left: 5.873093e-01	ci right 6.066342e-01	k: 5970	n:10000
RNF32   10000 perm   1 sec   (6810 perm/sec)   p_kst 5.970000e-01   p_cons 1.222000e-01   p_joint 2.756000e-01

Joint ci ratio: 4.477582e-02	ci left: 2.708056e-01	ci right 2.832593e-01	k: 5540	n:20000
Cons ci ratio: 7.341911e-02	ci left: 1.201511e-01	ci right 1.293583e-01	k: 2494	n:20000
KS ci ratio: 2.279390e-02	ci left: 5.897123e-01	ci right 6.033597e-01	k: 11931	n:20000
RNF32   20000 perm   3 sec   (5981 perm/sec)   p_kst 5.965500e-01   p_cons 1.247000e-01   p_joint 2.770000e-01

Outputting figure to mutsig2_images.part000000000148/RNF32.2_1121_20000_0.59655_0.1247_0.277.png
                gene_name: RNF32
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 91 percent done.
RNF34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.021289e-03	ci left: 9.654135e-01	ci right 9.723098e-01	k: 9690	n:10000
Cons ci ratio: 1.839835e-02	ci left: 8.118192e-01	ci right 8.269942e-01	k: 8195	n:10000
KS ci ratio: 3.881196e-02	ci left: 4.950504e-01	ci right 5.147467e-01	k: 5049	n:10000
RNF34   10000 perm   2 sec   (6621 perm/sec)   p_kst 5.049000e-01   p_cons 8.195000e-01   p_joint 9.690000e-01

Outputting figure to mutsig2_images.part000000000148/RNF34.2_1156_10000_0.5049_0.8195_0.969.png
                gene_name: RNF34
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 92 percent done.
RNF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.974422e-02	ci left: 3.734575e-01	ci right 3.926107e-01	k: 3830	n:10000
KS ci ratio: 7.671024e-03	ci left: 9.593225e-01	ci right 9.668046e-01	k: 9632	n:10000
RNF8   10000 perm   2 sec   (6531 perm/sec)   p_kst 9.632000e-01   p_cons 3.830000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000148/RNF8.2_1584_10000_0.9632_0.383_1.png
                gene_name: RNF8
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
RNFT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.638676e-02	ci left: 5.272676e-01	ci right 5.469108e-01	k: 5371	n:10000
KS ci ratio: 3.447565e-02	ci left: 5.540129e-01	ci right 5.735499e-01	k: 5638	n:10000
RNFT1   10000 perm   1 sec   (6911 perm/sec)   p_kst 5.638000e-01   p_cons 5.371000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000148/RNFT1.2_1344_10000_0.5638_0.5371_1.png
                gene_name: RNFT1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
RNFT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.144844e-02	ci left: 7.612190e-01	ci right 7.778238e-01	k: 7696	n:10000
Cons ci ratio: 3.131434e-02	ci left: 6.007610e-01	ci right 6.199746e-01	k: 6104	n:10000
KS ci ratio: 3.038068e-02	ci left: 6.151246e-01	ci right 6.342027e-01	k: 6247	n:10000
RNFT2   10000 perm   2 sec   (6438 perm/sec)   p_kst 6.247000e-01   p_cons 6.104000e-01   p_joint 7.696000e-01

Outputting figure to mutsig2_images.part000000000148/RNFT2.2_1442_10000_0.6247_0.6104_0.7696.png
                gene_name: RNFT2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 98 percent done.
RNH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.131491e-02	ci left: 1.484485e-01	ci right 1.627527e-01	k: 1555	n:10000
Cons ci ratio: 1.073223e-01	ci left: 1.113483e-01	ci right 1.240753e-01	k: 1176	n:10000
KS ci ratio: 5.536657e-02	ci left: 3.245569e-01	ci right 3.431400e-01	k: 3338	n:10000
RNH1   10000 perm   2 sec   (6586 perm/sec)   p_kst 3.338000e-01   p_cons 1.176000e-01   p_joint 1.555000e-01

Joint ci ratio: 8.747182e-02	ci left: 8.724471e-02	ci right 9.527459e-02	k: 1824	n:20000
Cons ci ratio: 8.137980e-02	ci left: 9.970398e-02	ci right 1.082116e-01	k: 2078	n:20000
KS ci ratio: 3.941114e-02	ci left: 3.243788e-01	ci right 3.374704e-01	k: 6618	n:20000
RNH1   20000 perm   3 sec   (5824 perm/sec)   p_kst 3.309000e-01   p_cons 1.039000e-01   p_joint 9.120000e-02

Outputting figure to mutsig2_images.part000000000148/RNH1.2_1422_20000_0.3309_0.1039_0.0912.png
                gene_name: RNH1
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.095 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000148
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 148 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1431>
Subject: Job 9894118: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1431>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000149> was used as the working directory.
Started at Sat Oct  6 00:27:32 2012
Results reported at Sat Oct  6 03:57:32 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000149.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000149.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 149  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000149.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  13340.76 sec.
    Max Memory :      6468 MB
    Max Swap   :      8796 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
149
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 149
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 149: processing genes 13343 - 13432
Calculating significance of each gene.
Using projection method.
13343	ROCK2	9.292257e-01
13344	ROD1	2.624626e-01
13345	ROGDI	1
13346	ROM1	8.044440e-01
13347	ROMO1	1
13348	ROPN1	1
13349	ROPN1B	3.044541e-01
13350	ROPN1L	6.530898e-01
13351	ROR1	3.272059e-02
13352	ROR2	6.334284e-01
13353	RORA	8.136215e-01
13354	RORB	7.186095e-02
13355	RORC	9.155244e-01
13356	ROS1	1.492661e-01
13357	RP1	6.865101e-03
13358	RP1L1	6.157413e-01
13359	RP2	1.069502e-01
13360	RP9	2.062282e-02
13361	RPA1	6.309138e-01
13362	RPA2	6.671012e-01
13363	RPA3	1
13364	RPA4	3.382383e-01
13365	RPAIN	2.053936e-01
13366	RPAP1	9.075437e-01
13367	RPAP2	4.700786e-01
13368	RPAP3	7.508494e-01
13369	RPE	2.488648e-01
13370	RPE65	1.374773e-03
13371	RPF1	3.596993e-01
13372	RPF2	7.240001e-01
13373	RPGR	4.419992e-01
13374	RPGRIP1	4.460782e-01
13375	RPGRIP1L	4.181884e-01
13376	RPH3A	2.227559e-01
13377	RPH3AL	1
13378	RPIA	4.106804e-01
13379	RPL10	3.856466e-01
13380	RPL10A	2.314869e-01
13381	RPL10L	4.399830e-01
13382	RPL11	6.092513e-01
13383	RPL12	1
13384	RPL13	1
13385	RPL13A	1
13386	RPL14	1
13387	RPL15	1
13388	RPL17	1
13389	RPL18	1
13390	RPL18A	6.111263e-01
13391	RPL19	3.799853e-01
13392	RPL21	4.897173e-01
13393	RPL22	8.280332e-02
13394	RPL22L1	4.492139e-01
13395	RPL23	1
13396	RPL23A	1
13397	RPL24	4.218473e-01
13398	RPL26	1
13399	RPL26L1	1
13400	RPL27	1
13401	RPL27A	1
13402	RPL28	2.206458e-01
13403	RPL29	1
13404	RPL3	6.612997e-01
13405	RPL30	1
13406	RPL31	1.189362e-01
13407	RPL32	4.649418e-01
13408	RPL34	1
13409	RPL35	4.631771e-01
13410	RPL35A	1
13411	RPL36	1
13412	RPL36A	1
13413	RPL36AL	1
13414	RPL37	1
13415	RPL37A	1
13416	RPL38	1
13417	RPL39	1.743036e-01
13418	RPL39L	1
13419	RPL3L	8.659987e-01
13420	RPL4	5.197147e-01
13421	RPL41	1
13422	RPL5	8.122251e-01
13423	RPL6	3.370727e-01
13424	RPL7	5.667713e-01
13425	RPL7A	1
13426	RPL7L1	1
13427	RPL8	1
13428	RPL9	4.447089e-02
13429	RPLP0	2.586486e-01
13430	RPLP1	1
13431	RPLP2	1
13432	RPN1	1
Done

Running MutSig 2:
Scatter job 149: processing genes 13343 - 13432
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.700814e-02	ci left: 8.342946e-01	ci right 8.487059e-01	k: 8416	n:10000
Cons ci ratio: 3.917845e-02	ci left: 4.903513e-01	ci right 5.100486e-01	k: 5002	n:10000
KS ci ratio: 1.016190e-02	ci left: 9.321629e-01	ci right 9.417806e-01	k: 9371	n:10000
RP1   10000 perm   4 sec   (2763 perm/sec)   p_kst 9.371000e-01   p_cons 5.002000e-01   p_joint 8.416000e-01

Outputting figure to mutsig2_images.part000000000149/RP1.23_6483_10000_0.9371_0.5002_0.8416.png
                gene_name: RP1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 3 percent done.
ROS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.153911e-02	ci left: 7.597007e-01	ci right 7.763429e-01	k: 7681	n:10000
Cons ci ratio: 1.484613e-02	ci left: 8.679499e-01	ci right 8.810311e-01	k: 8746	n:10000
KS ci ratio: 2.978118e-02	ci left: 6.244707e-01	ci right 6.434512e-01	k: 6340	n:10000
ROS1   10000 perm   4 sec   (2759 perm/sec)   p_kst 6.340000e-01   p_cons 8.746000e-01   p_joint 7.681000e-01

Outputting figure to mutsig2_images.part000000000149/ROS1.22_7216_10000_0.634_0.8746_0.7681.png
                gene_name: ROS1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 6 percent done.
RP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.358455e-02	ci left: 4.373218e-01	ci right 4.569090e-01	k: 4471	n:10000
Cons ci ratio: 7.972063e-02	ci left: 1.868804e-01	ci right 2.024978e-01	k: 1946	n:10000
KS ci ratio: 2.328347e-02	ci left: 7.304755e-01	ci right 7.477850e-01	k: 7392	n:10000
RP1L1   10000 perm   3 sec   (3199 perm/sec)   p_kst 7.392000e-01   p_cons 1.946000e-01   p_joint 4.471000e-01

Outputting figure to mutsig2_images.part000000000149/RP1L1.12_7215_10000_0.7392_0.1946_0.4471.png
                gene_name: RP1L1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 9 percent done.
RPGRIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.558480e-02	ci left: 1.659274e-01	ci right 1.808634e-01	k: 1733	n:10000
Cons ci ratio: 8.036185e-02	ci left: 1.844192e-01	ci right 1.999605e-01	k: 1921	n:10000
KS ci ratio: 8.276929e-02	ci left: 1.755630e-01	ci right 1.908220e-01	k: 1831	n:10000
RPGRIP1   10000 perm   2 sec   (4233 perm/sec)   p_kst 1.831000e-01   p_cons 1.921000e-01   p_joint 1.733000e-01

Outputting figure to mutsig2_images.part000000000149/RPGRIP1.12_3957_10000_0.1831_0.1921_0.1733.png
                gene_name: RPGRIP1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 11 percent done.
ROR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.789910e-02	ci left: 8.199499e-01	ci right 8.348589e-01	k: 8275	n:10000
Cons ci ratio: 2.374855e-02	ci left: 7.226973e-01	ci right 7.401677e-01	k: 7315	n:10000
KS ci ratio: 3.336753e-02	ci left: 5.700537e-01	ci right 5.894998e-01	k: 5798	n:10000
ROR1   10000 perm   2 sec   (4133 perm/sec)   p_kst 5.798000e-01   p_cons 7.315000e-01   p_joint 8.275000e-01

Outputting figure to mutsig2_images.part000000000149/ROR1.9_2858_10000_0.5798_0.7315_0.8275.png
                gene_name: ROR1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 14 percent done.
RPGRIP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.506102e-02	ci left: 5.456958e-01	ci right 5.652719e-01	k: 5555	n:10000
KS ci ratio: 8.933874e-03	ci left: 9.462737e-01	ci right 9.548614e-01	k: 9507	n:10000
RPGRIP1L   10000 perm   3 sec   (3761 perm/sec)   p_kst 9.507000e-01   p_cons 5.555000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RPGRIP1L.9_4052_10000_0.9507_0.5555_1.png
                gene_name: RPGRIP1L
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
RPE65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.956399e-02	ci left: 7.926319e-01	ci right 8.083926e-01	k: 8006	n:10000
KS ci ratio: 1.713548e-02	ci left: 8.322587e-01	ci right 8.467429e-01	k: 8396	n:10000
RPE65   10000 perm   2 sec   (4562 perm/sec)   p_kst 8.396000e-01   p_cons 8.006000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RPE65.8_1658_10000_0.8396_0.8006_1.png
                gene_name: RPE65
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
ROR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.604833e-01	ci left: 5.176584e-02	ci right 6.089478e-02	k: 562	n:10000
Cons ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
KS ci ratio: 7.837355e-02	ci left: 1.921984e-01	ci right 2.079767e-01	k: 2000	n:10000
ROR2   10000 perm   2 sec   (4674 perm/sec)   p_kst 2.000000e-01   p_cons 4.050000e-02   p_joint 5.620000e-02

Joint ci ratio: 9.737753e-02	ci left: 7.128887e-02	ci right 7.863527e-02	k: 1498	n:20000
Cons ci ratio: 1.359668e-01	ci left: 3.718116e-02	ci right 4.265364e-02	k: 797	n:20000
KS ci ratio: 5.522945e-02	ci left: 1.956132e-01	ci right 2.067738e-01	k: 4023	n:20000
ROR2   20000 perm   5 sec   (4099 perm/sec)   p_kst 2.011500e-01   p_cons 3.985000e-02   p_joint 7.490000e-02

Joint ci ratio: 7.512685e-02	ci left: 8.006578e-02	ci right 8.634855e-02	k: 2495	n:30000
Cons ci ratio: 1.108246e-01	ci left: 3.781053e-02	ci right 4.227910e-02	k: 1200	n:30000
KS ci ratio: 4.491327e-02	ci left: 1.979318e-01	ci right 2.070592e-01	k: 6074	n:30000
ROR2   30000 perm   8 sec   (3980 perm/sec)   p_kst 2.024667e-01   p_cons 4.000000e-02   p_joint 8.316667e-02

Joint ci ratio: 7.109969e-02	ci left: 6.810846e-02	ci right 7.315409e-02	k: 2824	n:40000
Cons ci ratio: 9.611280e-02	ci left: 3.800290e-02	ci right 4.186425e-02	k: 1596	n:40000
KS ci ratio: 3.808121e-02	ci left: 2.054213e-01	ci right 2.134209e-01	k: 8376	n:40000
ROR2   40000 perm   10 sec   (3873 perm/sec)   p_kst 2.094000e-01   p_cons 3.990000e-02   p_joint 7.060000e-02

Outputting figure to mutsig2_images.part000000000149/ROR2.7_2868_40000_0.2094_0.0399_0.0706.png
                gene_name: ROR2
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.068 
    ci_joint_bounds_right: 0.073 

Current progress: 23 percent done.
ROCK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.930388e-01	ci left: 3.576701e-02	ci right 4.350411e-02	k: 395	n:10000
Cons ci ratio: 2.885738e-02	ci left: 6.390502e-01	ci right 6.578633e-01	k: 6485	n:10000
KS ci ratio: 3.389164e-01	ci left: 1.096414e-02	ci right 1.552595e-02	k: 131	n:10000
ROCK2   10000 perm   2 sec   (4067 perm/sec)   p_kst 1.310000e-02   p_cons 6.485000e-01   p_joint 3.950000e-02

Joint ci ratio: 1.565382e-01	ci left: 2.801598e-02	ci right 3.282183e-02	k: 607	n:20000
Cons ci ratio: 2.045313e-02	ci left: 6.407826e-01	ci right 6.540745e-01	k: 12949	n:20000
KS ci ratio: 2.478726e-01	ci left: 1.081866e-02	ci right 1.392552e-02	k: 246	n:20000
ROCK2   20000 perm   5 sec   (3773 perm/sec)   p_kst 1.230000e-02   p_cons 6.474500e-01   p_joint 3.035000e-02

Joint ci ratio: 1.161132e-01	ci left: 3.447105e-02	ci right 3.875263e-02	k: 1097	n:30000
Cons ci ratio: 1.661184e-02	ci left: 6.444379e-01	ci right 6.552664e-01	k: 19496	n:30000
KS ci ratio: 2.036446e-01	ci left: 1.095686e-02	ci right 1.347226e-02	k: 365	n:30000
ROCK2   30000 perm   8 sec   (3630 perm/sec)   p_kst 1.216667e-02   p_cons 6.498667e-01   p_joint 3.656667e-02

Joint ci ratio: 9.706636e-02	ci left: 3.727033e-02	ci right 4.109694e-02	k: 1566	n:40000
Cons ci ratio: 1.440193e-02	ci left: 6.446757e-01	ci right 6.540527e-01	k: 25975	n:40000
KS ci ratio: 1.758159e-01	ci left: 1.119504e-02	ci right 1.337662e-02	k: 490	n:40000
ROCK2   40000 perm   11 sec   (3552 perm/sec)   p_kst 1.225000e-02   p_cons 6.493750e-01   p_joint 3.915000e-02

Joint ci ratio: 1.064183e-01	ci left: 2.501229e-02	ci right 2.784305e-02	k: 1320	n:50000
Cons ci ratio: 1.285764e-02	ci left: 6.460212e-01	ci right 6.544013e-01	k: 32511	n:50000
KS ci ratio: 1.608416e-01	ci left: 1.079509e-02	ci right 1.270222e-02	k: 586	n:50000
ROCK2   50000 perm   14 sec   (3469 perm/sec)   p_kst 1.172000e-02   p_cons 6.502200e-01   p_joint 2.640000e-02

Joint ci ratio: 8.567162e-02	ci left: 3.227034e-02	ci right 3.517499e-02	k: 2022	n:60000
Cons ci ratio: 1.170696e-02	ci left: 6.475715e-01	ci right 6.552139e-01	k: 39084	n:60000
KS ci ratio: 1.464496e-01	ci left: 1.093524e-02	ci right 1.267913e-02	k: 707	n:60000
ROCK2   60000 perm   18 sec   (3416 perm/sec)   p_kst 1.178333e-02   p_cons 6.514000e-01   p_joint 3.370000e-02

Joint ci ratio: 8.950364e-02	ci left: 2.547638e-02	ci right 2.787736e-02	k: 1866	n:70000
Cons ci ratio: 1.081743e-02	ci left: 6.487443e-01	ci right 6.558145e-01	k: 45660	n:70000
KS ci ratio: 1.355862e-01	ci left: 1.099939e-02	ci right 1.261289e-02	k: 825	n:70000
ROCK2   70000 perm   21 sec   (3361 perm/sec)   p_kst 1.178571e-02   p_cons 6.522857e-01   p_joint 2.665714e-02

Joint ci ratio: 7.956184e-02	ci left: 2.827705e-02	ci right 3.063224e-02	k: 2355	n:80000
Cons ci ratio: 1.031694e-02	ci left: 6.401070e-01	ci right 6.467576e-01	k: 51475	n:80000
KS ci ratio: 1.269655e-01	ci left: 1.102689e-02	ci right 1.253383e-02	k: 941	n:80000
ROCK2   80000 perm   24 sec   (3305 perm/sec)   p_kst 1.176250e-02   p_cons 6.434375e-01   p_joint 2.943750e-02

Joint ci ratio: 7.900982e-02	ci left: 2.556935e-02	ci right 2.768353e-02	k: 2395	n:90000
Cons ci ratio: 9.721354e-03	ci left: 6.405611e-01	ci right 6.468297e-01	k: 57933	n:90000
KS ci ratio: 1.199192e-01	ci left: 1.102925e-02	ci right 1.244693e-02	k: 1055	n:90000
ROCK2   90000 perm   28 sec   (3255 perm/sec)   p_kst 1.172222e-02   p_cons 6.437000e-01   p_joint 2.661111e-02

Joint ci ratio: 7.982034e-02	ci left: 2.260916e-02	ci right 2.449861e-02	k: 2354	n:100000
Cons ci ratio: 9.224707e-03	ci left: 6.406124e-01	ci right 6.465592e-01	k: 64359	n:100000
KS ci ratio: 1.135860e-01	ci left: 1.110103e-02	ci right 1.244752e-02	k: 1176	n:100000
ROCK2   100000 perm   31 sec   (3208 perm/sec)   p_kst 1.176000e-02   p_cons 6.435900e-01   p_joint 2.354000e-02

Joint ci ratio: 7.019021e-02	ci left: 2.660406e-02	ci right 2.854823e-02	k: 3032	n:110000
Cons ci ratio: 8.789477e-03	ci left: 6.410619e-01	ci right 6.467305e-01	k: 70829	n:110000
KS ci ratio: 1.087986e-01	ci left: 1.102866e-02	ci right 1.230637e-02	k: 1282	n:110000
ROCK2   110000 perm   35 sec   (3160 perm/sec)   p_kst 1.165455e-02   p_cons 6.439000e-01   p_joint 2.756364e-02

Joint ci ratio: 6.794182e-02	ci left: 2.607383e-02	ci right 2.791579e-02	k: 3238	n:120000
Cons ci ratio: 8.415748e-03	ci left: 6.411581e-01	ci right 6.465850e-01	k: 77265	n:120000
KS ci ratio: 1.043417e-01	ci left: 1.101806e-02	ci right 1.223904e-02	k: 1394	n:120000
ROCK2   120000 perm   38 sec   (3117 perm/sec)   p_kst 1.161667e-02   p_cons 6.438750e-01   p_joint 2.698333e-02

Joint ci ratio: 6.870262e-02	ci left: 2.359076e-02	ci right 2.527669e-02	k: 3175	n:130000
Cons ci ratio: 8.086238e-03	ci left: 6.412283e-01	ci right 6.464422e-01	k: 83699	n:130000
KS ci ratio: 1.001562e-01	ci left: 1.106251e-02	ci right 1.223635e-02	k: 1513	n:130000
ROCK2   130000 perm   42 sec   (3075 perm/sec)   p_kst 1.163846e-02   p_cons 6.438385e-01   p_joint 2.442308e-02

Joint ci ratio: 6.730396e-02	ci left: 2.286033e-02	ci right 2.445949e-02	k: 3311	n:140000
Cons ci ratio: 7.788383e-03	ci left: 6.415426e-01	ci right 6.465658e-01	k: 90168	n:140000
KS ci ratio: 9.664681e-02	ci left: 1.105264e-02	ci right 1.218201e-02	k: 1625	n:140000
ROCK2   140000 perm   46 sec   (3034 perm/sec)   p_kst 1.160714e-02   p_cons 6.440571e-01   p_joint 2.365000e-02

Outputting figure to mutsig2_images.part000000000149/ROCK2.6_4299_140000_0.011607_0.64406_0.02365.png
                gene_name: ROCK2
               theta_stop: 0.097 
                    nperm: 140000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.024 

Current progress: 26 percent done.
RORB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.520321e-02	ci left: 5.436920e-01	ci right 5.632768e-01	k: 5535	n:10000
Cons ci ratio: 5.057512e-02	ci left: 3.656978e-01	ci right 3.847749e-01	k: 3752	n:10000
KS ci ratio: 3.547462e-02	ci left: 5.398854e-01	ci right 5.594856e-01	k: 5497	n:10000
RORB   10000 perm   2 sec   (5481 perm/sec)   p_kst 5.497000e-01   p_cons 3.752000e-01   p_joint 5.535000e-01

Outputting figure to mutsig2_images.part000000000149/RORB.6_1420_10000_0.5497_0.3752_0.5535.png
                gene_name: RORB
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 29 percent done.
RPH3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.888903e-02	ci left: 6.385473e-01	ci right 6.573664e-01	k: 6480	n:10000
Cons ci ratio: 6.228728e-02	ci left: 2.747796e-01	ci right 2.925466e-01	k: 2836	n:10000
KS ci ratio: 2.460821e-02	ci left: 7.083616e-01	ci right 7.261116e-01	k: 7173	n:10000
RPH3A   10000 perm   2 sec   (5193 perm/sec)   p_kst 7.173000e-01   p_cons 2.836000e-01   p_joint 6.480000e-01

Outputting figure to mutsig2_images.part000000000149/RPH3A.6_2165_10000_0.7173_0.2836_0.648.png
                gene_name: RPH3A
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 31 percent done.
ROD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.803054e-02	ci left: 8.178151e-01	ci right 8.327949e-01	k: 8254	n:10000
Cons ci ratio: 3.376626e-02	ci left: 5.642377e-01	ci right 5.837192e-01	k: 5740	n:10000
KS ci ratio: 3.191661e-02	ci left: 5.916250e-01	ci right 6.109159e-01	k: 6013	n:10000
ROD1   10000 perm   2 sec   (5458 perm/sec)   p_kst 6.013000e-01   p_cons 5.740000e-01   p_joint 8.254000e-01

Outputting figure to mutsig2_images.part000000000149/ROD1.4_1728_10000_0.6013_0.574_0.8254.png
                gene_name: ROD1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 34 percent done.
RP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.363436e-01	ci left: 1.114735e-02	ci right 1.574255e-02	k: 133	n:10000
Cons ci ratio: 4.160103e-01	ci left: 6.974044e-03	ci right 1.072050e-02	k: 87	n:10000
KS ci ratio: 1.589924e-01	ci left: 5.272798e-02	ci right 6.193202e-02	k: 572	n:10000
RP2   10000 perm   2 sec   (5660 perm/sec)   p_kst 5.720000e-02   p_cons 8.700000e-03   p_joint 1.330000e-02

Joint ci ratio: 1.970633e-01	ci left: 1.748601e-02	ci right 2.135550e-02	k: 387	n:20000
Cons ci ratio: 3.076857e-01	ci left: 6.812321e-03	ci right 9.333850e-03	k: 160	n:20000
KS ci ratio: 1.141271e-01	ci left: 5.251267e-02	ci right 5.891727e-02	k: 1113	n:20000
RP2   20000 perm   4 sec   (4924 perm/sec)   p_kst 5.565000e-02   p_cons 8.000000e-03   p_joint 1.935000e-02

Joint ci ratio: 2.030836e-01	ci left: 1.102017e-02	ci right 1.354227e-02	k: 367	n:30000
Cons ci ratio: 2.615209e-01	ci left: 6.461458e-03	ci right 8.435732e-03	k: 222	n:30000
KS ci ratio: 9.454075e-02	ci left: 5.163197e-02	ci right 5.678813e-02	k: 1625	n:30000
RP2   30000 perm   7 sec   (4599 perm/sec)   p_kst 5.416667e-02   p_cons 7.400000e-03   p_joint 1.223333e-02

Joint ci ratio: 1.460112e-01	ci left: 1.640631e-02	ci right 1.901438e-02	k: 707	n:40000
Cons ci ratio: 2.196418e-01	ci left: 7.032159e-03	ci right 8.790409e-03	k: 315	n:40000
KS ci ratio: 8.252089e-02	ci left: 5.119218e-02	ci right 5.562294e-02	k: 2135	n:40000
RP2   40000 perm   9 sec   (4400 perm/sec)   p_kst 5.337500e-02   p_cons 7.875000e-03   p_joint 1.767500e-02

Joint ci ratio: 1.128579e-01	ci left: 2.222881e-02	ci right 2.490690e-02	k: 1177	n:50000
Cons ci ratio: 1.949670e-01	ci left: 7.237827e-03	ci right 8.820093e-03	k: 400	n:50000
KS ci ratio: 7.303214e-02	ci left: 5.248688e-02	ci right 5.648504e-02	k: 2723	n:50000
RP2   50000 perm   12 sec   (4256 perm/sec)   p_kst 5.446000e-02   p_cons 8.000000e-03   p_joint 2.354000e-02

Joint ci ratio: 1.090021e-01	ci left: 1.994869e-02	ci right 2.226462e-02	k: 1265	n:60000
Cons ci ratio: 1.795285e-01	ci left: 7.175327e-03	ci right 8.606222e-03	k: 472	n:60000
KS ci ratio: 6.679662e-02	ci left: 5.246724e-02	ci right 5.610936e-02	k: 3256	n:60000
RP2   60000 perm   14 sec   (4172 perm/sec)   p_kst 5.426667e-02   p_cons 7.866667e-03   p_joint 2.108333e-02

Joint ci ratio: 1.253815e-01	ci left: 1.290731e-02	ci right 1.464762e-02	k: 963	n:70000
Cons ci ratio: 1.935012e-01	ci left: 5.264483e-03	ci right 6.405637e-03	k: 407	n:70000
KS ci ratio: 6.204775e-02	ci left: 5.226666e-02	ci right 5.562758e-02	k: 3775	n:70000
RP2   70000 perm   17 sec   (4087 perm/sec)   p_kst 5.392857e-02   p_cons 5.814286e-03   p_joint 1.375714e-02

Joint ci ratio: 1.058241e-01	ci left: 1.596941e-02	ci right 1.776587e-02	k: 1348	n:80000
Cons ci ratio: 1.814518e-01	ci left: 5.273597e-03	ci right 6.337722e-03	k: 463	n:80000
KS ci ratio: 5.791587e-02	ci left: 5.259170e-02	ci right 5.574073e-02	k: 4332	n:80000
RP2   80000 perm   20 sec   (4023 perm/sec)   p_kst 5.415000e-02   p_cons 5.787500e-03   p_joint 1.685000e-02

Joint ci ratio: 8.831367e-02	ci left: 2.047532e-02	ci right 2.237792e-02	k: 1927	n:90000
Cons ci ratio: 1.709099e-01	ci left: 5.314318e-03	ci right 6.317937e-03	k: 522	n:90000
KS ci ratio: 5.503241e-02	ci left: 5.189613e-02	ci right 5.484385e-02	k: 4802	n:90000
RP2   90000 perm   23 sec   (3949 perm/sec)   p_kst 5.335556e-02   p_cons 5.800000e-03   p_joint 2.141111e-02

Joint ci ratio: 9.736709e-02	ci left: 1.517281e-02	ci right 1.673545e-02	k: 1594	n:100000
Cons ci ratio: 1.644483e-01	ci left: 5.185235e-03	ci right 6.123788e-03	k: 564	n:100000
KS ci ratio: 5.220147e-02	ci left: 5.198485e-02	ci right 5.478112e-02	k: 5337	n:100000
RP2   100000 perm   26 sec   (3898 perm/sec)   p_kst 5.337000e-02   p_cons 5.640000e-03   p_joint 1.594000e-02

Joint ci ratio: 9.571792e-02	ci left: 1.429882e-02	ci right 1.574509e-02	k: 1651	n:110000
Cons ci ratio: 1.546210e-01	ci left: 5.359776e-03	ci right 6.266578e-03	k: 638	n:110000
KS ci ratio: 4.963746e-02	ci left: 5.232118e-02	ci right 5.499333e-02	k: 5901	n:110000
RP2   110000 perm   29 sec   (3848 perm/sec)   p_kst 5.364545e-02   p_cons 5.800000e-03   p_joint 1.500909e-02

Joint ci ratio: 1.191896e-01	ci left: 8.400601e-03	ci right 9.473333e-03	k: 1071	n:120000
Cons ci ratio: 1.473059e-01	ci left: 5.434357e-03	ci right 6.306450e-03	k: 703	n:120000
KS ci ratio: 4.746410e-02	ci left: 5.250535e-02	ci right 5.506627e-02	k: 6453	n:120000
RP2   120000 perm   32 sec   (3793 perm/sec)   p_kst 5.377500e-02   p_cons 5.858333e-03   p_joint 8.925000e-03

Joint ci ratio: 1.197388e-01	ci left: 7.687068e-03	ci right 8.673521e-03	k: 1062	n:130000
Cons ci ratio: 1.409396e-01	ci left: 5.498318e-03	ci right 6.339336e-03	k: 768	n:130000
KS ci ratio: 4.570519e-02	ci left: 5.232853e-02	ci right 5.478374e-02	k: 6961	n:130000
RP2   130000 perm   35 sec   (3736 perm/sec)   p_kst 5.354615e-02   p_cons 5.907692e-03   p_joint 8.169231e-03

Joint ci ratio: 1.219908e-01	ci left: 6.874592e-03	ci right 7.774566e-03	k: 1024	n:140000
Cons ci ratio: 1.357431e-01	ci left: 5.519325e-03	ci right 6.329915e-03	k: 828	n:140000
KS ci ratio: 4.391141e-02	ci left: 5.267330e-02	ci right 5.504522e-02	k: 7539	n:140000
RP2   140000 perm   38 sec   (3686 perm/sec)   p_kst 5.385000e-02   p_cons 5.914286e-03   p_joint 7.314286e-03

Joint ci ratio: 1.213078e-01	ci left: 6.493773e-03	ci right 7.338789e-03	k: 1036	n:150000
Cons ci ratio: 1.303465e-01	ci left: 5.602524e-03	ci right 6.390089e-03	k: 898	n:150000
KS ci ratio: 4.243515e-02	ci left: 5.268331e-02	ci right 5.497397e-02	k: 8073	n:150000
RP2   150000 perm   41 sec   (3632 perm/sec)   p_kst 5.382000e-02   p_cons 5.986667e-03   p_joint 6.906667e-03

Joint ci ratio: 1.183826e-01	ci left: 6.403152e-03	ci right 7.214875e-03	k: 1088	n:160000
Cons ci ratio: 1.266690e-01	ci left: 5.572962e-03	ci right 6.332608e-03	k: 951	n:160000
KS ci ratio: 4.110600e-02	ci left: 5.267468e-02	ci right 5.489152e-02	k: 8604	n:160000
RP2   160000 perm   45 sec   (3561 perm/sec)   p_kst 5.377500e-02   p_cons 5.943750e-03   p_joint 6.800000e-03

Joint ci ratio: 1.158124e-01	ci left: 6.306270e-03	ci right 7.087167e-03	k: 1137	n:170000
Cons ci ratio: 1.229176e-01	ci left: 5.581368e-03	ci right 6.317987e-03	k: 1010	n:170000
KS ci ratio: 3.986673e-02	ci left: 5.273798e-02	ci right 5.488903e-02	k: 9147	n:170000
RP2   170000 perm   49 sec   (3505 perm/sec)   p_kst 5.380588e-02   p_cons 5.941176e-03   p_joint 6.688235e-03

Joint ci ratio: 9.929989e-02	ci left: 8.156911e-03	ci right 9.014585e-03	k: 1544	n:180000
Cons ci ratio: 1.204472e-01	ci left: 5.497508e-03	ci right 6.207438e-03	k: 1052	n:180000
KS ci ratio: 3.868680e-02	ci left: 5.291624e-02	ci right 5.500926e-02	k: 9712	n:180000
RP2   180000 perm   52 sec   (3448 perm/sec)   p_kst 5.395556e-02   p_cons 5.844444e-03   p_joint 8.577778e-03

Joint ci ratio: 9.925777e-02	ci left: 7.737781e-03	ci right 8.551017e-03	k: 1546	n:190000
Cons ci ratio: 1.170495e-01	ci left: 5.524794e-03	ci right 6.216729e-03	k: 1114	n:190000
KS ci ratio: 3.767558e-02	ci left: 5.288879e-02	ci right 5.492485e-02	k: 10241	n:190000
RP2   190000 perm   56 sec   (3402 perm/sec)   p_kst 5.390000e-02   p_cons 5.863158e-03   p_joint 8.136842e-03

Joint ci ratio: 1.012766e-01	ci left: 7.058289e-03	ci right 7.816093e-03	k: 1486	n:200000
Cons ci ratio: 1.141192e-01	ci left: 5.530171e-03	ci right 6.204272e-03	k: 1172	n:200000
KS ci ratio: 3.677221e-02	ci left: 5.277550e-02	ci right 5.475746e-02	k: 10752	n:200000
RP2   200000 perm   60 sec   (3357 perm/sec)   p_kst 5.376000e-02   p_cons 5.860000e-03   p_joint 7.430000e-03

Joint ci ratio: 1.028741e-01	ci left: 6.513270e-03	ci right 7.224254e-03	k: 1441	n:210000
Cons ci ratio: 1.117644e-01	ci left: 5.498193e-03	ci right 6.153656e-03	k: 1222	n:210000
KS ci ratio: 3.584853e-02	ci left: 5.290490e-02	ci right 5.484077e-02	k: 11312	n:210000
RP2   210000 perm   64 sec   (3295 perm/sec)   p_kst 5.386667e-02   p_cons 5.819048e-03   p_joint 6.861905e-03

Joint ci ratio: 1.037999e-01	ci left: 6.106447e-03	ci right 6.779384e-03	k: 1416	n:220000
Cons ci ratio: 1.087364e-01	ci left: 5.553272e-03	ci right 6.196216e-03	k: 1291	n:220000
KS ci ratio: 3.506767e-02	ci left: 5.280221e-02	ci right 5.469139e-02	k: 11823	n:220000
RP2   220000 perm   68 sec   (3253 perm/sec)   p_kst 5.374091e-02   p_cons 5.868182e-03   p_joint 6.436364e-03

Joint ci ratio: 1.017401e-01	ci left: 6.086638e-03	ci right 6.743286e-03	k: 1474	n:230000
Cons ci ratio: 1.065738e-01	ci left: 5.536053e-03	ci right 6.163455e-03	k: 1344	n:230000
KS ci ratio: 3.430486e-02	ci left: 5.279944e-02	ci right 5.464661e-02	k: 12355	n:230000
RP2   230000 perm   72 sec   (3210 perm/sec)   p_kst 5.371739e-02   p_cons 5.843478e-03   p_joint 6.408696e-03

Joint ci ratio: 8.559900e-02	ci left: 8.291537e-03	ci right 9.037069e-03	k: 2078	n:240000
Cons ci ratio: 1.039018e-01	ci left: 5.589382e-03	ci right 6.205976e-03	k: 1414	n:240000
KS ci ratio: 3.257003e-02	ci left: 5.599303e-02	ci right 5.785102e-02	k: 13660	n:240000
RP2   240000 perm   76 sec   (3170 perm/sec)   p_kst 5.691667e-02   p_cons 5.891667e-03   p_joint 8.658333e-03

Joint ci ratio: 8.528366e-02	ci left: 8.022460e-03	ci right 8.741007e-03	k: 2094	n:250000
Cons ci ratio: 1.015588e-01	ci left: 5.623028e-03	ci right 6.228512e-03	k: 1480	n:250000
KS ci ratio: 3.191936e-02	ci left: 5.598714e-02	ci right 5.780715e-02	k: 14223	n:250000
RP2   250000 perm   80 sec   (3129 perm/sec)   p_kst 5.689200e-02   p_cons 5.920000e-03   p_joint 8.376000e-03

Joint ci ratio: 8.450811e-02	ci left: 7.860692e-03	ci right 8.558030e-03	k: 2133	n:260000
Cons ci ratio: 1.000200e-01	ci left: 5.579215e-03	ci right 6.170343e-03	k: 1526	n:260000
KS ci ratio: 3.127482e-02	ci left: 5.608895e-02	ci right 5.787478e-02	k: 14814	n:260000
RP2   260000 perm   84 sec   (3083 perm/sec)   p_kst 5.697692e-02   p_cons 5.869231e-03   p_joint 8.203846e-03

Joint ci ratio: 8.304327e-02	ci left: 7.845137e-03	ci right 8.528447e-03	k: 2209	n:270000
Cons ci ratio: 9.864364e-02	ci left: 5.527872e-03	ci right 6.105035e-03	k: 1569	n:270000
KS ci ratio: 3.067625e-02	ci left: 5.615415e-02	ci right 5.790723e-02	k: 15397	n:270000
RP2   270000 perm   89 sec   (3046 perm/sec)   p_kst 5.702593e-02   p_cons 5.811111e-03   p_joint 8.181481e-03

Outputting figure to mutsig2_images.part000000000149/RP2.4_1073_270000_0.057026_0.0058111_0.0081815.png
                gene_name: RP2
               theta_stop: 0.099 
                    nperm: 270000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.0058 
      ci_cons_bounds_left: 0.0055 
     ci_cons_bounds_right: 0.0061 
                  p_joint: 0.0082 
     ci_joint_bounds_left: 0.0078 
    ci_joint_bounds_right: 0.0085 

Current progress: 37 percent done.
RPAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.720472e-02	ci left: 6.656194e-01	ci right 6.840787e-01	k: 6749	n:10000
Cons ci ratio: 1.175161e-02	ci left: 9.120382e-01	ci right 9.229172e-01	k: 9176	n:10000
KS ci ratio: 4.481289e-02	ci left: 4.236581e-01	ci right 4.431807e-01	k: 4334	n:10000
RPAP1   10000 perm   2 sec   (4289 perm/sec)   p_kst 4.334000e-01   p_cons 9.176000e-01   p_joint 6.749000e-01

Outputting figure to mutsig2_images.part000000000149/RPAP1.4_4278_10000_0.4334_0.9176_0.6749.png
                gene_name: RPAP1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 40 percent done.
RPF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.616291e-02	ci left: 6.826450e-01	ci right 7.008432e-01	k: 6918	n:10000
Cons ci ratio: 7.653682e-02	ci left: 1.997852e-01	ci right 2.157854e-01	k: 2077	n:10000
KS ci ratio: 1.977202e-02	ci left: 7.891832e-01	ci right 8.050433e-01	k: 7972	n:10000
RPF1   10000 perm   2 sec   (5893 perm/sec)   p_kst 7.972000e-01   p_cons 2.077000e-01   p_joint 6.918000e-01

Outputting figure to mutsig2_images.part000000000149/RPF1.4_1086_10000_0.7972_0.2077_0.6918.png
                gene_name: RPF1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 43 percent done.
RPGR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.179401e-02	ci left: 3.546598e-01	ci right 3.736194e-01	k: 3641	n:10000
Cons ci ratio: 7.250119e-02	ci left: 2.179321e-01	ci right 2.344277e-01	k: 2261	n:10000
KS ci ratio: 3.825701e-02	ci left: 5.022507e-01	ci right 5.219422e-01	k: 5121	n:10000
RPGR   10000 perm   2 sec   (4117 perm/sec)   p_kst 5.121000e-01   p_cons 2.261000e-01   p_joint 3.641000e-01

Outputting figure to mutsig2_images.part000000000149/RPGR.4_4078_10000_0.5121_0.2261_0.3641.png
                gene_name: RPGR
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 46 percent done.
RPL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.589334e-02	ci left: 6.870800e-01	ci right 7.052056e-01	k: 6962	n:10000
Cons ci ratio: 3.219017e-02	ci left: 5.875100e-01	ci right 6.068334e-01	k: 5972	n:10000
KS ci ratio: 3.567568e-02	ci left: 5.370809e-01	ci right 5.566918e-01	k: 5469	n:10000
RPL9   10000 perm   2 sec   (5819 perm/sec)   p_kst 5.469000e-01   p_cons 5.972000e-01   p_joint 6.962000e-01

Outputting figure to mutsig2_images.part000000000149/RPL9.4_603_10000_0.5469_0.5972_0.6962.png
                gene_name: RPL9
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 49 percent done.
RP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.551626e-02	ci left: 3.233656e-01	ci right 3.419320e-01	k: 3326	n:10000
Cons ci ratio: 5.508155e-02	ci left: 3.268405e-01	ci right 3.454551e-01	k: 3361	n:10000
KS ci ratio: 7.389568e-02	ci left: 2.114201e-01	ci right 2.277435e-01	k: 2195	n:10000
RP9   10000 perm   2 sec   (6250 perm/sec)   p_kst 2.195000e-01   p_cons 3.361000e-01   p_joint 3.326000e-01

Outputting figure to mutsig2_images.part000000000149/RP9.3_690_10000_0.2195_0.3361_0.3326.png
                gene_name: RP9
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 51 percent done.
RPA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.032241e-02	ci left: 6.160289e-01	ci right 6.350979e-01	k: 6256	n:10000
KS ci ratio: 3.465118e-02	ci left: 5.515074e-01	ci right 5.710568e-01	k: 5613	n:10000
RPA4   10000 perm   2 sec   (6265 perm/sec)   p_kst 5.613000e-01   p_cons 6.256000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RPA4.3_790_10000_0.5613_0.6256_1.png
                gene_name: RPA4
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
RPAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.164346e-01	ci left: 9.584256e-02	ci right 1.077905e-01	k: 1017	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
RPAP2   10000 perm   2 sec   (5491 perm/sec)   p_kst 1.000000e-04   p_cons 1.017000e-01   p_joint 0

Joint ci ratio: 3.949987e-01	ci left: 3.934731e-03	ci right 5.913431e-03	k: 97	n:20000
Cons ci ratio: 7.961742e-02	ci left: 1.037797e-01	ci right 1.124346e-01	k: 2161	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
RPAP2   20000 perm   4 sec   (4938 perm/sec)   p_kst 5.000000e-05   p_cons 1.080500e-01   p_joint 4.850000e-03

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 6.467286e-02	ci left: 1.055606e-01	ci right 1.126487e-01	k: 3272	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
RPAP2   30000 perm   6 sec   (4728 perm/sec)   p_kst 3.333333e-05   p_cons 1.090667e-01   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 5.804455e-02	ci left: 9.937136e-02	ci right 1.053365e-01	k: 4093	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
RPAP2   40000 perm   9 sec   (4590 perm/sec)   p_kst 2.500000e-05   p_cons 1.023250e-01   p_joint 0

Joint ci ratio: 3.935807e-01	ci left: 1.591500e-03	ci right 2.388100e-03	k: 98	n:50000
Cons ci ratio: 5.162781e-02	ci left: 1.007047e-01	ci right 1.060615e-01	k: 5168	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
RPAP2   50000 perm   11 sec   (4472 perm/sec)   p_kst 2.000000e-05   p_cons 1.033600e-01   p_joint 1.960000e-03

Joint ci ratio: 5.058125e-01	ci left: 7.486406e-04	ci right 1.268248e-03	k: 59	n:60000
Cons ci ratio: 4.699786e-02	ci left: 1.014529e-01	ci right 1.063522e-01	k: 6233	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
RPAP2   60000 perm   14 sec   (4366 perm/sec)   p_kst 1.666667e-05   p_cons 1.038833e-01   p_joint 9.833333e-04

Joint ci ratio: 5.656052e-01	ci left: 4.933809e-04	ci right 8.927588e-04	k: 47	n:70000
Cons ci ratio: 4.370296e-02	ci left: 1.008284e-01	ci right 1.053475e-01	k: 7215	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
RPAP2   70000 perm   16 sec   (4267 perm/sec)   p_kst 1.428571e-05   p_cons 1.030714e-01   p_joint 6.714286e-04

Joint ci ratio: 5.283877e-01	ci left: 5.071202e-04	ci right 8.806380e-04	k: 54	n:80000
Cons ci ratio: 4.085240e-02	ci left: 1.011001e-01	ci right 1.053288e-01	k: 8256	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
RPAP2   80000 perm   19 sec   (4178 perm/sec)   p_kst 1.250000e-05   p_cons 1.032000e-01   p_joint 6.750000e-04

Joint ci ratio: 5.101704e-01	ci left: 4.893889e-04	ci right 8.330153e-04	k: 58	n:90000
Cons ci ratio: 3.854409e-02	ci left: 1.010875e-01	ci right 1.050714e-01	k: 9276	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
RPAP2   90000 perm   22 sec   (4102 perm/sec)   p_kst 1.111111e-05   p_cons 1.030667e-01   p_joint 6.444444e-04

Joint ci ratio: 4.860557e-01	ci left: 4.929118e-04	ci right 8.171933e-04	k: 64	n:100000
Cons ci ratio: 3.659541e-02	ci left: 1.010433e-01	ci right 1.048198e-01	k: 10292	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
RPAP2   100000 perm   25 sec   (4027 perm/sec)   p_kst 1.000000e-05   p_cons 1.029200e-01   p_joint 6.400000e-04

Joint ci ratio: 5.190798e-01	ci left: 3.845840e-04	ci right 6.610466e-04	k: 56	n:110000
Cons ci ratio: 3.502233e-02	ci left: 1.004520e-01	ci right 1.040417e-01	k: 11246	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
RPAP2   110000 perm   28 sec   (3954 perm/sec)   p_kst 9.090909e-06   p_cons 1.022364e-01   p_joint 5.090909e-04

Joint ci ratio: 5.656877e-01	ci left: 2.877957e-04	ci right 5.208000e-04	k: 47	n:120000
Cons ci ratio: 3.352594e-02	ci left: 1.005578e-01	ci right 1.039948e-01	k: 12272	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
RPAP2   120000 perm   31 sec   (3870 perm/sec)   p_kst 8.333333e-06   p_cons 1.022667e-01   p_joint 3.916667e-04

Joint ci ratio: 5.598923e-01	ci left: 2.722538e-04	ci right 4.895170e-04	k: 48	n:130000
Cons ci ratio: 3.221035e-02	ci left: 1.006272e-01	ci right 1.039291e-01	k: 13295	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
RPAP2   130000 perm   34 sec   (3780 perm/sec)   p_kst 7.692308e-06   p_cons 1.022692e-01   p_joint 3.692308e-04

Joint ci ratio: 6.047762e-01	ci left: 2.101673e-04	ci right 3.972730e-04	k: 41	n:140000
Cons ci ratio: 2.987001e-02	ci left: 1.079043e-01	ci right 1.111833e-01	k: 15335	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
RPAP2   140000 perm   38 sec   (3697 perm/sec)   p_kst 7.142857e-06   p_cons 1.095357e-01   p_joint 2.928571e-04

Joint ci ratio: 5.977067e-01	ci left: 2.018066e-04	ci right 3.784600e-04	k: 42	n:150000
Cons ci ratio: 2.884282e-02	ci left: 1.080565e-01	ci right 1.112253e-01	k: 16445	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
RPAP2   150000 perm   41 sec   (3634 perm/sec)   p_kst 6.666667e-06   p_cons 1.096333e-01   p_joint 2.800000e-04

Joint ci ratio: 5.778876e-01	ci left: 2.051528e-04	ci right 3.763167e-04	k: 45	n:160000
Cons ci ratio: 2.795505e-02	ci left: 1.079118e-01	ci right 1.109774e-01	k: 17510	n:160000
KS ci ratio: 2.263185e+00	ci left: 1.513812e-06	ci right 4.515356e-05	k: 2	n:160000
RPAP2   160000 perm   45 sec   (3581 perm/sec)   p_kst 1.250000e-05   p_cons 1.094375e-01   p_joint 2.812500e-04

Joint ci ratio: 5.717100e-01	ci left: 1.981112e-04	ci right 3.609105e-04	k: 46	n:170000
Cons ci ratio: 2.715107e-02	ci left: 1.077387e-01	ci right 1.107100e-01	k: 18567	n:170000
KS ci ratio: 2.263186e+00	ci left: 1.424764e-06	ci right 4.249751e-05	k: 2	n:170000
RPAP2   170000 perm   48 sec   (3528 perm/sec)   p_kst 1.176471e-05   p_cons 1.092176e-01   p_joint 2.705882e-04

Joint ci ratio: 5.488305e-01	ci left: 2.061788e-04	ci right 3.661992e-04	k: 50	n:180000
Cons ci ratio: 2.637498e-02	ci left: 1.078621e-01	ci right 1.107505e-01	k: 19674	n:180000
KS ci ratio: 2.263188e+00	ci left: 1.345610e-06	ci right 4.013657e-05	k: 2	n:180000
RPAP2   180000 perm   52 sec   (3476 perm/sec)   p_kst 1.111111e-05   p_cons 1.093000e-01   p_joint 2.777778e-04

Joint ci ratio: 5.542973e-01	ci left: 1.907978e-04	ci right 3.409364e-04	k: 49	n:190000
Cons ci ratio: 2.570353e-02	ci left: 1.076596e-01	ci right 1.104681e-01	k: 20721	n:190000
KS ci ratio: 2.263189e+00	ci left: 1.274788e-06	ci right 3.802415e-05	k: 2	n:190000
RPAP2   190000 perm   55 sec   (3426 perm/sec)   p_kst 1.052632e-05   p_cons 1.090579e-01   p_joint 2.578947e-04

Joint ci ratio: 5.599300e-01	ci left: 1.769622e-04	ci right 3.181927e-04	k: 48	n:200000
Cons ci ratio: 2.506279e-02	ci left: 1.076175e-01	ci right 1.103539e-01	k: 21796	n:200000
KS ci ratio: 2.263190e+00	ci left: 1.211049e-06	ci right 3.612297e-05	k: 2	n:200000
RPAP2   200000 perm   59 sec   (3378 perm/sec)   p_kst 1.000000e-05   p_cons 1.089800e-01   p_joint 2.400000e-04

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 2.444311e-02	ci left: 1.077743e-01	ci right 1.104460e-01	k: 22912	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
RPAP2   210000 perm   63 sec   (3329 perm/sec)   p_kst 4.761905e-06   p_cons 1.091048e-01   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 2.386556e-02	ci left: 1.079313e-01	ci right 1.105427e-01	k: 24031	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
RPAP2   220000 perm   67 sec   (3278 perm/sec)   p_kst 4.545455e-06   p_cons 1.092318e-01   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 2.334586e-02	ci left: 1.079195e-01	ci right 1.104730e-01	k: 25114	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
RPAP2   230000 perm   71 sec   (3231 perm/sec)   p_kst 4.347826e-06   p_cons 1.091913e-01   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 2.286556e-02	ci left: 1.078512e-01	ci right 1.103499e-01	k: 26183	n:240000
KS ci ratio: 2.263194e+00	ci left: 1.009207e-06	ci right 3.010254e-05	k: 2	n:240000
RPAP2   240000 perm   75 sec   (3187 perm/sec)   p_kst 8.333333e-06   p_cons 1.090958e-01   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 2.240312e-02	ci left: 1.078804e-01	ci right 1.103286e-01	k: 27275	n:250000
KS ci ratio: 2.263195e+00	ci left: 9.688386e-07	ci right 2.889845e-05	k: 2	n:250000
RPAP2   250000 perm   79 sec   (3145 perm/sec)   p_kst 8.000000e-06   p_cons 1.091000e-01   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 2.196287e-02	ci left: 1.079500e-01	ci right 1.103510e-01	k: 28378	n:260000
KS ci ratio: 2.263196e+00	ci left: 9.315755e-07	ci right 2.778698e-05	k: 2	n:260000
RPAP2   260000 perm   84 sec   (3104 perm/sec)   p_kst 7.692308e-06   p_cons 1.091462e-01   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 2.156814e-02	ci left: 1.078305e-01	ci right 1.101853e-01	k: 29431	n:270000
KS ci ratio: 2.263196e+00	ci left: 8.970727e-07	ci right 2.675784e-05	k: 2	n:270000
RPAP2   270000 perm   88 sec   (3063 perm/sec)   p_kst 7.407407e-06   p_cons 1.090037e-01   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 2.119550e-02	ci left: 1.077058e-01	ci right 1.100166e-01	k: 30480	n:280000
KS ci ratio: 2.263197e+00	ci left: 8.650343e-07	ci right 2.580222e-05	k: 2	n:280000
RPAP2   280000 perm   93 sec   (3024 perm/sec)   p_kst 7.142857e-06   p_cons 1.088571e-01   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 2.080010e-02	ci left: 1.079744e-01	ci right 1.102472e-01	k: 31641	n:290000
KS ci ratio: 2.263197e+00	ci left: 8.352055e-07	ci right 2.491249e-05	k: 2	n:290000
RPAP2   290000 perm   97 sec   (2983 perm/sec)   p_kst 6.896552e-06   p_cons 1.091069e-01   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 2.044948e-02	ci left: 1.080031e-01	ci right 1.102378e-01	k: 32735	n:300000
KS ci ratio: 2.263198e+00	ci left: 8.073653e-07	ci right 2.408208e-05	k: 2	n:300000
RPAP2   300000 perm   102 sec   (2946 perm/sec)   p_kst 6.666667e-06   p_cons 1.091167e-01   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 2.011335e-02	ci left: 1.080560e-01	ci right 1.102546e-01	k: 33837	n:310000
KS ci ratio: 2.263198e+00	ci left: 7.813212e-07	ci right 2.330525e-05	k: 2	n:310000
RPAP2   310000 perm   107 sec   (2910 perm/sec)   p_kst 6.451613e-06   p_cons 1.091516e-01   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 1.979994e-02	ci left: 1.080405e-01	ci right 1.102041e-01	k: 34918	n:320000
KS ci ratio: 2.263199e+00	ci left: 7.569049e-07	ci right 2.257696e-05	k: 2	n:320000
RPAP2   320000 perm   111 sec   (2874 perm/sec)   p_kst 6.250000e-06   p_cons 1.091188e-01   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 1.950408e-02	ci left: 1.079930e-01	ci right 1.101230e-01	k: 35988	n:330000
KS ci ratio: 2.263199e+00	ci left: 7.339684e-07	ci right 2.189282e-05	k: 2	n:330000
RPAP2   330000 perm   116 sec   (2837 perm/sec)   p_kst 6.060606e-06   p_cons 1.090545e-01   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 1.921994e-02	ci left: 1.079602e-01	ci right 1.100582e-01	k: 37062	n:340000
KS ci ratio: 2.263200e+00	ci left: 7.123810e-07	ci right 2.124892e-05	k: 2	n:340000
RPAP2   340000 perm   122 sec   (2797 perm/sec)   p_kst 5.882353e-06   p_cons 1.090059e-01   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 1.892393e-02	ci left: 1.081742e-01	ci right 1.102437e-01	k: 38222	n:350000
KS ci ratio: 2.263200e+00	ci left: 6.920273e-07	ci right 2.064181e-05	k: 2	n:350000
RPAP2   350000 perm   127 sec   (2762 perm/sec)   p_kst 5.714286e-06   p_cons 1.092057e-01   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 1.866860e-02	ci left: 1.080916e-01	ci right 1.101313e-01	k: 39279	n:360000
KS ci ratio: 2.263200e+00	ci left: 6.728043e-07	ci right 2.006843e-05	k: 2	n:360000
RPAP2   360000 perm   132 sec   (2729 perm/sec)   p_kst 5.555556e-06   p_cons 1.091083e-01   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 1.841974e-02	ci left: 1.080514e-01	ci right 1.100628e-01	k: 40350	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
RPAP2   370000 perm   137 sec   (2696 perm/sec)   p_kst 2.702703e-06   p_cons 1.090541e-01   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 1.816680e-02	ci left: 1.081602e-01	ci right 1.101457e-01	k: 41477	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
RPAP2   380000 perm   143 sec   (2665 perm/sec)   p_kst 2.631579e-06   p_cons 1.091500e-01   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 1.792943e-02	ci left: 1.082049e-01	ci right 1.101650e-01	k: 42581	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
RPAP2   390000 perm   148 sec   (2635 perm/sec)   p_kst 2.564103e-06   p_cons 1.091821e-01   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 1.770591e-02	ci left: 1.081952e-01	ci right 1.101305e-01	k: 43664	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
RPAP2   400000 perm   154 sec   (2606 perm/sec)   p_kst 2.500000e-06   p_cons 1.091600e-01   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 1.749010e-02	ci left: 1.081910e-01	ci right 1.101023e-01	k: 44749	n:410000
KS ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
RPAP2   410000 perm   159 sec   (2575 perm/sec)   p_kst 2.439024e-06   p_cons 1.091439e-01   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 1.729238e-02	ci left: 1.080709e-01	ci right 1.099583e-01	k: 45785	n:420000
KS ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
RPAP2   420000 perm   165 sec   (2547 perm/sec)   p_kst 2.380952e-06   p_cons 1.090119e-01   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 1.709690e-02	ci left: 1.080051e-01	ci right 1.098699e-01	k: 46842	n:430000
KS ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
RPAP2   430000 perm   171 sec   (2520 perm/sec)   p_kst 2.325581e-06   p_cons 1.089349e-01   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 1.690831e-02	ci left: 1.079380e-01	ci right 1.097808e-01	k: 47897	n:440000
KS ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
RPAP2   440000 perm   177 sec   (2491 perm/sec)   p_kst 2.272727e-06   p_cons 1.088568e-01   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 1.671701e-02	ci left: 1.079757e-01	ci right 1.097982e-01	k: 48998	n:450000
KS ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
RPAP2   450000 perm   183 sec   (2464 perm/sec)   p_kst 2.222222e-06   p_cons 1.088844e-01   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 1.653243e-02	ci left: 1.080077e-01	ci right 1.098103e-01	k: 50097	n:460000
KS ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
RPAP2   460000 perm   189 sec   (2437 perm/sec)   p_kst 2.173913e-06   p_cons 1.089065e-01   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 1.636100e-02	ci left: 1.079535e-01	ci right 1.097364e-01	k: 51156	n:470000
KS ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
RPAP2   470000 perm   195 sec   (2410 perm/sec)   p_kst 2.127660e-06   p_cons 1.088426e-01   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 1.618993e-02	ci left: 1.079599e-01	ci right 1.097240e-01	k: 52243	n:480000
KS ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
RPAP2   480000 perm   201 sec   (2384 perm/sec)   p_kst 2.083333e-06   p_cons 1.088396e-01   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 1.602833e-02	ci left: 1.079152e-01	ci right 1.096609e-01	k: 53305	n:490000
KS ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
RPAP2   490000 perm   208 sec   (2357 perm/sec)   p_kst 2.040816e-06   p_cons 1.087857e-01   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 1.586738e-02	ci left: 1.079222e-01	ci right 1.096503e-01	k: 54392	n:500000
KS ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
RPAP2   500000 perm   215 sec   (2330 perm/sec)   p_kst 2.000000e-06   p_cons 1.087840e-01   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 1.570975e-02	ci left: 1.079466e-01	ci right 1.096578e-01	k: 55488	n:510000
KS ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
RPAP2   510000 perm   221 sec   (2305 perm/sec)   p_kst 1.960784e-06   p_cons 1.088000e-01   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 1.556569e-02	ci left: 1.078590e-01	ci right 1.095530e-01	k: 56526	n:520000
KS ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
RPAP2   520000 perm   228 sec   (2280 perm/sec)   p_kst 1.923077e-06   p_cons 1.087038e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 1.541830e-02	ci left: 1.078651e-01	ci right 1.095430e-01	k: 57612	n:530000
KS ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
RPAP2   530000 perm   235 sec   (2257 perm/sec)   p_kst 1.886792e-06   p_cons 1.087019e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 1.527736e-02	ci left: 1.078415e-01	ci right 1.095035e-01	k: 58682	n:540000
KS ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
RPAP2   540000 perm   242 sec   (2233 perm/sec)   p_kst 1.851852e-06   p_cons 1.086704e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 1.514050e-02	ci left: 1.078151e-01	ci right 1.094617e-01	k: 59750	n:550000
KS ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
RPAP2   550000 perm   249 sec   (2209 perm/sec)   p_kst 1.818182e-06   p_cons 1.086364e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 1.500227e-02	ci left: 1.078539e-01	ci right 1.094859e-01	k: 60854	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
RPAP2   560000 perm   256 sec   (2189 perm/sec)   p_kst 1.785714e-06   p_cons 1.086679e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 1.487328e-02	ci left: 1.078196e-01	ci right 1.094370e-01	k: 61917	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
RPAP2   570000 perm   263 sec   (2169 perm/sec)   p_kst 1.754386e-06   p_cons 1.086263e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 1.474087e-02	ci left: 1.078743e-01	ci right 1.094779e-01	k: 63031	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
RPAP2   580000 perm   270 sec   (2149 perm/sec)   p_kst 1.724138e-06   p_cons 1.086741e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 1.461973e-02	ci left: 1.078241e-01	ci right 1.094137e-01	k: 64084	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
RPAP2   590000 perm   277 sec   (2129 perm/sec)   p_kst 1.694915e-06   p_cons 1.086169e-01   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 1.449130e-02	ci left: 1.079118e-01	ci right 1.094886e-01	k: 65219	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
RPAP2   600000 perm   284 sec   (2110 perm/sec)   p_kst 1.666667e-06   p_cons 1.086983e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 1.436923e-02	ci left: 1.079559e-01	ci right 1.095200e-01	k: 66329	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
RPAP2   610000 perm   292 sec   (2091 perm/sec)   p_kst 1.639344e-06   p_cons 1.087361e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 1.426147e-02	ci left: 1.078458e-01	ci right 1.093965e-01	k: 67344	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
RPAP2   620000 perm   299 sec   (2072 perm/sec)   p_kst 1.612903e-06   p_cons 1.086194e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 1.414797e-02	ci left: 1.078501e-01	ci right 1.093884e-01	k: 68429	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
RPAP2   630000 perm   307 sec   (2055 perm/sec)   p_kst 1.587302e-06   p_cons 1.086175e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 1.403703e-02	ci left: 1.078559e-01	ci right 1.093821e-01	k: 69515	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
RPAP2   640000 perm   314 sec   (2038 perm/sec)   p_kst 1.562500e-06   p_cons 1.086172e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 1.393286e-02	ci left: 1.078032e-01	ci right 1.093172e-01	k: 70563	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
RPAP2   650000 perm   322 sec   (2021 perm/sec)   p_kst 1.538462e-06   p_cons 1.085585e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 1.382459e-02	ci left: 1.078413e-01	ci right 1.093440e-01	k: 71670	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
RPAP2   660000 perm   329 sec   (2004 perm/sec)   p_kst 1.515152e-06   p_cons 1.085909e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 1.371246e-02	ci left: 1.079675e-01	ci right 1.094597e-01	k: 72837	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
RPAP2   670000 perm   337 sec   (1985 perm/sec)   p_kst 1.492537e-06   p_cons 1.087119e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 1.361210e-02	ci left: 1.079611e-01	ci right 1.094422e-01	k: 73916	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
RPAP2   680000 perm   346 sec   (1967 perm/sec)   p_kst 1.470588e-06   p_cons 1.087000e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 1.351270e-02	ci left: 1.079723e-01	ci right 1.094426e-01	k: 75007	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
RPAP2   690000 perm   354 sec   (1949 perm/sec)   p_kst 1.449275e-06   p_cons 1.087058e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 1.341505e-02	ci left: 1.079888e-01	ci right 1.094487e-01	k: 76102	n:700000
KS ci ratio: 2.263207e+00	ci left: 3.460134e-07	ci right 1.032094e-05	k: 2	n:700000
RPAP2   700000 perm   362 sec   (1933 perm/sec)   p_kst 2.857143e-06   p_cons 1.087171e-01   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 1.331707e-02	ci left: 1.080401e-01	ci right 1.094899e-01	k: 77222	n:710000
KS ci ratio: 2.263207e+00	ci left: 3.411400e-07	ci right 1.017558e-05	k: 2	n:710000
RPAP2   710000 perm   371 sec   (1914 perm/sec)   p_kst 2.816901e-06   p_cons 1.087634e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 1.322765e-02	ci left: 1.079958e-01	ci right 1.094352e-01	k: 78274	n:720000
KS ci ratio: 2.263207e+00	ci left: 3.364020e-07	ci right 1.003425e-05	k: 2	n:720000
RPAP2   720000 perm   379 sec   (1899 perm/sec)   p_kst 2.777778e-06   p_cons 1.087139e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 1.314093e-02	ci left: 1.079390e-01	ci right 1.093682e-01	k: 79316	n:730000
KS ci ratio: 2.263207e+00	ci left: 3.317937e-07	ci right 9.896797e-06	k: 2	n:730000
RPAP2   730000 perm   387 sec   (1884 perm/sec)   p_kst 2.739726e-06   p_cons 1.086521e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 1.305134e-02	ci left: 1.079512e-01	ci right 1.093707e-01	k: 80408	n:740000
KS ci ratio: 2.263207e+00	ci left: 3.273100e-07	ci right 9.763057e-06	k: 2	n:740000
RPAP2   740000 perm   396 sec   (1869 perm/sec)   p_kst 2.702703e-06   p_cons 1.086595e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 1.296873e-02	ci left: 1.078861e-01	ci right 1.092956e-01	k: 81442	n:750000
KS ci ratio: 2.263207e+00	ci left: 3.229459e-07	ci right 9.632883e-06	k: 2	n:750000
RPAP2   750000 perm   404 sec   (1854 perm/sec)   p_kst 2.666667e-06   p_cons 1.085893e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 1.288242e-02	ci left: 1.079013e-01	ci right 1.093017e-01	k: 82536	n:760000
KS ci ratio: 2.263207e+00	ci left: 3.186966e-07	ci right 9.506135e-06	k: 2	n:760000
RPAP2   760000 perm   413 sec   (1840 perm/sec)   p_kst 2.631579e-06   p_cons 1.086000e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 1.279918e-02	ci left: 1.078955e-01	ci right 1.092867e-01	k: 83614	n:770000
KS ci ratio: 2.263207e+00	ci left: 3.145577e-07	ci right 9.382679e-06	k: 2	n:770000
RPAP2   770000 perm   422 sec   (1825 perm/sec)   p_kst 2.597403e-06   p_cons 1.085896e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 1.271628e-02	ci left: 1.079091e-01	ci right 1.092913e-01	k: 84707	n:780000
KS ci ratio: 2.263207e+00	ci left: 3.105249e-07	ci right 9.262389e-06	k: 2	n:780000
RPAP2   780000 perm   431 sec   (1811 perm/sec)   p_kst 2.564103e-06   p_cons 1.085987e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 1.263983e-02	ci left: 1.078478e-01	ci right 1.092209e-01	k: 85741	n:790000
KS ci ratio: 2.263207e+00	ci left: 3.065942e-07	ci right 9.145144e-06	k: 2	n:790000
RPAP2   790000 perm   440 sec   (1796 perm/sec)   p_kst 2.531646e-06   p_cons 1.085329e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 1.256118e-02	ci left: 1.078430e-01	ci right 1.092074e-01	k: 86819	n:800000
KS ci ratio: 2.263207e+00	ci left: 3.027617e-07	ci right 9.030830e-06	k: 2	n:800000
RPAP2   800000 perm   449 sec   (1781 perm/sec)   p_kst 2.500000e-06   p_cons 1.085238e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 1.248542e-02	ci left: 1.078161e-01	ci right 1.091719e-01	k: 87879	n:810000
KS ci ratio: 2.263207e+00	ci left: 2.990239e-07	ci right 8.919339e-06	k: 2	n:810000
RPAP2   810000 perm   458 sec   (1767 perm/sec)   p_kst 2.469136e-06   p_cons 1.084926e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 1.240740e-02	ci left: 1.078459e-01	ci right 1.091935e-01	k: 88985	n:820000
KS ci ratio: 2.263208e+00	ci left: 2.953773e-07	ci right 8.810567e-06	k: 2	n:820000
RPAP2   820000 perm   468 sec   (1752 perm/sec)   p_kst 2.439024e-06   p_cons 1.085183e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 1.232999e-02	ci left: 1.078881e-01	ci right 1.092278e-01	k: 90102	n:830000
KS ci ratio: 2.263208e+00	ci left: 2.918185e-07	ci right 8.704416e-06	k: 2	n:830000
RPAP2   830000 perm   477 sec   (1738 perm/sec)   p_kst 2.409639e-06   p_cons 1.085566e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 1.225507e-02	ci left: 1.079128e-01	ci right 1.092446e-01	k: 91205	n:840000
KS ci ratio: 2.263208e+00	ci left: 2.883445e-07	ci right 8.600792e-06	k: 2	n:840000
RPAP2   840000 perm   487 sec   (1725 perm/sec)   p_kst 2.380952e-06   p_cons 1.085774e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 1.218157e-02	ci left: 1.079358e-01	ci right 1.092598e-01	k: 92307	n:850000
KS ci ratio: 2.263208e+00	ci left: 2.849522e-07	ci right 8.499606e-06	k: 2	n:850000
RPAP2   850000 perm   496 sec   (1712 perm/sec)   p_kst 2.352941e-06   p_cons 1.085965e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 1.210857e-02	ci left: 1.079710e-01	ci right 1.092875e-01	k: 93420	n:860000
KS ci ratio: 2.263208e+00	ci left: 2.816388e-07	ci right 8.400774e-06	k: 2	n:860000
RPAP2   860000 perm   506 sec   (1699 perm/sec)   p_kst 2.325581e-06   p_cons 1.086279e-01   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 1.203716e-02	ci left: 1.080008e-01	ci right 1.093098e-01	k: 94529	n:870000
KS ci ratio: 2.263208e+00	ci left: 2.784016e-07	ci right 8.304214e-06	k: 2	n:870000
RPAP2   870000 perm   516 sec   (1687 perm/sec)   p_kst 2.298851e-06   p_cons 1.086540e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 1.196720e-02	ci left: 1.080266e-01	ci right 1.093283e-01	k: 95635	n:880000
KS ci ratio: 2.263208e+00	ci left: 2.752379e-07	ci right 8.209848e-06	k: 2	n:880000
RPAP2   880000 perm   526 sec   (1674 perm/sec)   p_kst 2.272727e-06   p_cons 1.086761e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 1.189797e-02	ci left: 1.080596e-01	ci right 1.093541e-01	k: 96748	n:890000
KS ci ratio: 2.263208e+00	ci left: 2.721454e-07	ci right 8.117603e-06	k: 2	n:890000
RPAP2   890000 perm   536 sec   (1661 perm/sec)   p_kst 2.247191e-06   p_cons 1.087056e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 1.183156e-02	ci left: 1.080654e-01	ci right 1.093527e-01	k: 97837	n:900000
KS ci ratio: 2.263208e+00	ci left: 2.691215e-07	ci right 8.027407e-06	k: 2	n:900000
RPAP2   900000 perm   546 sec   (1650 perm/sec)   p_kst 2.222222e-06   p_cons 1.087078e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 1.176751e-02	ci left: 1.080502e-01	ci right 1.093303e-01	k: 98907	n:910000
KS ci ratio: 2.263208e+00	ci left: 2.661642e-07	ci right 7.939194e-06	k: 2	n:910000
RPAP2   910000 perm   555 sec   (1638 perm/sec)   p_kst 2.197802e-06   p_cons 1.086890e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 1.170127e-02	ci left: 1.080885e-01	ci right 1.093618e-01	k: 100026	n:920000
KS ci ratio: 2.263208e+00	ci left: 2.632711e-07	ci right 7.852899e-06	k: 2	n:920000
RPAP2   920000 perm   566 sec   (1626 perm/sec)   p_kst 2.173913e-06   p_cons 1.087239e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 1.164092e-02	ci left: 1.080466e-01	ci right 1.093128e-01	k: 101071	n:930000
KS ci ratio: 2.263208e+00	ci left: 2.604402e-07	ci right 7.768460e-06	k: 2	n:930000
RPAP2   930000 perm   576 sec   (1615 perm/sec)   p_kst 2.150538e-06   p_cons 1.086785e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 1.157793e-02	ci left: 1.080651e-01	ci right 1.093246e-01	k: 102172	n:940000
KS ci ratio: 2.263208e+00	ci left: 2.576695e-07	ci right 7.685817e-06	k: 2	n:940000
RPAP2   940000 perm   586 sec   (1604 perm/sec)   p_kst 2.127660e-06   p_cons 1.086936e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 1.151702e-02	ci left: 1.080653e-01	ci right 1.093181e-01	k: 103256	n:950000
KS ci ratio: 2.263208e+00	ci left: 2.549572e-07	ci right 7.604913e-06	k: 2	n:950000
RPAP2   950000 perm   596 sec   (1593 perm/sec)   p_kst 2.105263e-06   p_cons 1.086905e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 1.145521e-02	ci left: 1.080967e-01	ci right 1.093431e-01	k: 104370	n:960000
KS ci ratio: 2.263208e+00	ci left: 2.523014e-07	ci right 7.525696e-06	k: 2	n:960000
RPAP2   960000 perm   607 sec   (1583 perm/sec)   p_kst 2.083333e-06   p_cons 1.087188e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 1.139463e-02	ci left: 1.081234e-01	ci right 1.093635e-01	k: 105480	n:970000
KS ci ratio: 2.263208e+00	ci left: 2.497004e-07	ci right 7.448112e-06	k: 2	n:970000
RPAP2   970000 perm   617 sec   (1571 perm/sec)   p_kst 2.061856e-06   p_cons 1.087423e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 1.133619e-02	ci left: 1.081292e-01	ci right 1.093629e-01	k: 106570	n:980000
KS ci ratio: 2.263208e+00	ci left: 2.471524e-07	ci right 7.372111e-06	k: 2	n:980000
RPAP2   980000 perm   628 sec   (1560 perm/sec)   p_kst 2.040816e-06   p_cons 1.087449e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 1.128170e-02	ci left: 1.080825e-01	ci right 1.093097e-01	k: 107608	n:990000
KS ci ratio: 2.263208e+00	ci left: 2.446559e-07	ci right 7.297645e-06	k: 2	n:990000
RPAP2   990000 perm   639 sec   (1550 perm/sec)   p_kst 2.020202e-06   p_cons 1.086949e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 1.122515e-02	ci left: 1.080856e-01	ci right 1.093067e-01	k: 108695	n:1000000
KS ci ratio: 2.263209e+00	ci left: 2.422094e-07	ci right 7.224669e-06	k: 2	n:1000000
RPAP2   1000000 perm   649 sec   (1540 perm/sec)   p_kst 2.000000e-06   p_cons 1.086950e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 1.116955e-02	ci left: 1.080867e-01	ci right 1.093017e-01	k: 109780	n:1010000
KS ci ratio: 2.263209e+00	ci left: 2.398113e-07	ci right 7.153138e-06	k: 2	n:1010000
RPAP2   1010000 perm   661 sec   (1529 perm/sec)   p_kst 1.980198e-06   p_cons 1.086931e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 1.111477e-02	ci left: 1.080878e-01	ci right 1.092968e-01	k: 110865	n:1020000
KS ci ratio: 2.263209e+00	ci left: 2.374602e-07	ci right 7.083009e-06	k: 2	n:1020000
RPAP2   1020000 perm   673 sec   (1515 perm/sec)   p_kst 1.960784e-06   p_cons 1.086912e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 1.106107e-02	ci left: 1.080840e-01	ci right 1.092871e-01	k: 111945	n:1030000
KS ci ratio: 2.263209e+00	ci left: 2.351547e-07	ci right 7.014242e-06	k: 2	n:1030000
RPAP2   1030000 perm   685 sec   (1503 perm/sec)   p_kst 1.941748e-06   p_cons 1.086845e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 1.100885e-02	ci left: 1.080679e-01	ci right 1.092651e-01	k: 113012	n:1040000
KS ci ratio: 2.263209e+00	ci left: 2.328936e-07	ci right 6.946798e-06	k: 2	n:1040000
RPAP2   1040000 perm   696 sec   (1494 perm/sec)   p_kst 1.923077e-06   p_cons 1.086654e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 1.095655e-02	ci left: 1.080663e-01	ci right 1.092578e-01	k: 114094	n:1050000
KS ci ratio: 2.263209e+00	ci left: 2.306756e-07	ci right 6.880638e-06	k: 2	n:1050000
RPAP2   1050000 perm   707 sec   (1485 perm/sec)   p_kst 1.904762e-06   p_cons 1.086610e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 1.090350e-02	ci left: 1.080911e-01	ci right 1.092771e-01	k: 115204	n:1060000
KS ci ratio: 2.263209e+00	ci left: 2.284994e-07	ci right 6.815726e-06	k: 2	n:1060000
RPAP2   1060000 perm   719 sec   (1475 perm/sec)   p_kst 1.886792e-06   p_cons 1.086830e-01   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 1.085295e-02	ci left: 1.080847e-01	ci right 1.092651e-01	k: 116281	n:1070000
KS ci ratio: 2.263209e+00	ci left: 2.263639e-07	ci right 6.752028e-06	k: 2	n:1070000
RPAP2   1070000 perm   730 sec   (1466 perm/sec)   p_kst 1.869159e-06   p_cons 1.086738e-01   p_joint 0

Joint ci ratio: 9.507317e-01	ci left: 8.467970e-06	ci right 2.405822e-05	k: 16	n:1080000
Cons ci ratio: 1.080294e-02	ci left: 1.080812e-01	ci right 1.092561e-01	k: 117361	n:1080000
KS ci ratio: 1.959995e+00	ci left: 5.728449e-07	ci right 8.117824e-06	k: 3	n:1080000
RPAP2   1080000 perm   743 sec   (1453 perm/sec)   p_kst 2.777778e-06   p_cons 1.086676e-01   p_joint 1.481481e-05

Joint ci ratio: 9.507318e-01	ci left: 8.390282e-06	ci right 2.383750e-05	k: 16	n:1090000
Cons ci ratio: 1.075203e-02	ci left: 1.081062e-01	ci right 1.092757e-01	k: 118472	n:1090000
KS ci ratio: 1.959996e+00	ci left: 5.675895e-07	ci right 8.043349e-06	k: 3	n:1090000
RPAP2   1090000 perm   756 sec   (1442 perm/sec)   p_kst 2.752294e-06   p_cons 1.086899e-01   p_joint 1.467890e-05

Joint ci ratio: 9.507319e-01	ci left: 8.314006e-06	ci right 2.362080e-05	k: 16	n:1100000
Cons ci ratio: 1.070118e-02	ci left: 1.081425e-01	ci right 1.093068e-01	k: 119596	n:1100000
KS ci ratio: 1.959996e+00	ci left: 5.624296e-07	ci right 7.970227e-06	k: 3	n:1100000
RPAP2   1100000 perm   768 sec   (1433 perm/sec)   p_kst 2.727273e-06   p_cons 1.087236e-01   p_joint 1.454545e-05

Joint ci ratio: 9.507319e-01	ci left: 8.239105e-06	ci right 2.340800e-05	k: 16	n:1110000
Cons ci ratio: 1.065253e-02	ci left: 1.081512e-01	ci right 1.093103e-01	k: 120690	n:1110000
KS ci ratio: 1.959996e+00	ci left: 5.573626e-07	ci right 7.898424e-06	k: 3	n:1110000
RPAP2   1110000 perm   780 sec   (1424 perm/sec)   p_kst 2.702703e-06   p_cons 1.087297e-01   p_joint 1.441441e-05

Joint ci ratio: 9.507320e-01	ci left: 8.165541e-06	ci right 2.319900e-05	k: 16	n:1120000
Cons ci ratio: 1.060347e-02	ci left: 1.081793e-01	ci right 1.093334e-01	k: 121806	n:1120000
KS ci ratio: 1.959996e+00	ci left: 5.523862e-07	ci right 7.827902e-06	k: 3	n:1120000
RPAP2   1120000 perm   791 sec   (1415 perm/sec)   p_kst 2.678571e-06   p_cons 1.087554e-01   p_joint 1.428571e-05

Joint ci ratio: 9.507321e-01	ci left: 8.093280e-06	ci right 2.299370e-05	k: 16	n:1130000
Cons ci ratio: 1.055604e-02	ci left: 1.081893e-01	ci right 1.093383e-01	k: 122902	n:1130000
KS ci ratio: 1.959996e+00	ci left: 5.474978e-07	ci right 7.758629e-06	k: 3	n:1130000
RPAP2   1130000 perm   804 sec   (1406 perm/sec)   p_kst 2.654867e-06   p_cons 1.087628e-01   p_joint 1.415929e-05

Joint ci ratio: 9.507321e-01	ci left: 8.022286e-06	ci right 2.279200e-05	k: 16	n:1140000
Cons ci ratio: 1.051100e-02	ci left: 1.081668e-01	ci right 1.093106e-01	k: 123961	n:1140000
KS ci ratio: 1.959996e+00	ci left: 5.426952e-07	ci right 7.690571e-06	k: 3	n:1140000
RPAP2   1140000 perm   816 sec   (1398 perm/sec)   p_kst 2.631579e-06   p_cons 1.087377e-01   p_joint 1.403509e-05

Joint ci ratio: 9.507322e-01	ci left: 7.952527e-06	ci right 2.259381e-05	k: 16	n:1150000
Cons ci ratio: 1.046593e-02	ci left: 1.081560e-01	ci right 1.092947e-01	k: 125033	n:1150000
KS ci ratio: 1.959996e+00	ci left: 5.379761e-07	ci right 7.623697e-06	k: 3	n:1150000
RPAP2   1150000 perm   828 sec   (1389 perm/sec)   p_kst 2.608696e-06   p_cons 1.087243e-01   p_joint 1.391304e-05

Joint ci ratio: 9.507323e-01	ci left: 7.883970e-06	ci right 2.239904e-05	k: 16	n:1160000
Cons ci ratio: 1.042022e-02	ci left: 1.081677e-01	ci right 1.093015e-01	k: 126131	n:1160000
KS ci ratio: 1.959996e+00	ci left: 5.333384e-07	ci right 7.557975e-06	k: 3	n:1160000
RPAP2   1160000 perm   840 sec   (1382 perm/sec)   p_kst 2.586207e-06   p_cons 1.087336e-01   p_joint 1.379310e-05

Joint ci ratio: 9.507323e-01	ci left: 7.816586e-06	ci right 2.220760e-05	k: 16	n:1170000
Cons ci ratio: 1.037680e-02	ci left: 1.081476e-01	ci right 1.092765e-01	k: 127192	n:1170000
KS ci ratio: 1.959996e+00	ci left: 5.287799e-07	ci right 7.493377e-06	k: 3	n:1170000
RPAP2   1170000 perm   852 sec   (1374 perm/sec)   p_kst 2.564103e-06   p_cons 1.087111e-01   p_joint 1.367521e-05

Joint ci ratio: 9.507324e-01	ci left: 7.750343e-06	ci right 2.201940e-05	k: 16	n:1180000
Cons ci ratio: 1.033251e-02	ci left: 1.081541e-01	ci right 1.092783e-01	k: 128284	n:1180000
KS ci ratio: 1.959996e+00	ci left: 5.242987e-07	ci right 7.429874e-06	k: 3	n:1180000
RPAP2   1180000 perm   864 sec   (1366 perm/sec)   p_kst 2.542373e-06   p_cons 1.087153e-01   p_joint 1.355932e-05

Joint ci ratio: 9.507325e-01	ci left: 7.685214e-06	ci right 2.183436e-05	k: 16	n:1190000
Cons ci ratio: 1.029071e-02	ci left: 1.081245e-01	ci right 1.092438e-01	k: 129333	n:1190000
KS ci ratio: 1.959996e+00	ci left: 5.198928e-07	ci right 7.367439e-06	k: 3	n:1190000
RPAP2   1190000 perm   877 sec   (1358 perm/sec)   p_kst 2.521008e-06   p_cons 1.086832e-01   p_joint 1.344538e-05

Joint ci ratio: 9.239455e-01	ci left: 8.252626e-06	ci right 2.268211e-05	k: 17	n:1200000
Cons ci ratio: 1.024738e-02	ci left: 1.081336e-01	ci right 1.092482e-01	k: 130428	n:1200000
KS ci ratio: 1.959996e+00	ci left: 5.155604e-07	ci right 7.306043e-06	k: 3	n:1200000
RPAP2   1200000 perm   889 sec   (1350 perm/sec)   p_kst 2.500000e-06   p_cons 1.086900e-01   p_joint 1.416667e-05

Joint ci ratio: 9.239456e-01	ci left: 8.184423e-06	ci right 2.249465e-05	k: 17	n:1210000
Cons ci ratio: 1.020652e-02	ci left: 1.081063e-01	ci right 1.092162e-01	k: 131479	n:1210000
KS ci ratio: 1.959996e+00	ci left: 5.112996e-07	ci right 7.245663e-06	k: 3	n:1210000
RPAP2   1210000 perm   901 sec   (1343 perm/sec)   p_kst 2.479339e-06   p_cons 1.086603e-01   p_joint 1.404959e-05

Joint ci ratio: 9.239457e-01	ci left: 8.117337e-06	ci right 2.231027e-05	k: 17	n:1220000
Cons ci ratio: 1.016407e-02	ci left: 1.081188e-01	ci right 1.092241e-01	k: 132578	n:1220000
KS ci ratio: 1.959996e+00	ci left: 5.071086e-07	ci right 7.186272e-06	k: 3	n:1220000
RPAP2   1220000 perm   914 sec   (1335 perm/sec)   p_kst 2.459016e-06   p_cons 1.086705e-01   p_joint 1.393443e-05

Joint ci ratio: 8.993024e-01	ci left: 8.673145e-06	ci right 2.312816e-05	k: 18	n:1230000
Cons ci ratio: 1.012423e-02	ci left: 1.080912e-01	ci right 1.091919e-01	k: 133628	n:1230000
KS ci ratio: 1.959996e+00	ci left: 5.029857e-07	ci right 7.127848e-06	k: 3	n:1230000
RPAP2   1230000 perm   927 sec   (1327 perm/sec)   p_kst 2.439024e-06   p_cons 1.086407e-01   p_joint 1.463415e-05

Joint ci ratio: 8.993024e-01	ci left: 8.603200e-06	ci right 2.294165e-05	k: 18	n:1240000
Cons ci ratio: 1.008493e-02	ci left: 1.080625e-01	ci right 1.091586e-01	k: 134676	n:1240000
KS ci ratio: 1.959996e+00	ci left: 4.989294e-07	ci right 7.070365e-06	k: 3	n:1240000
RPAP2   1240000 perm   939 sec   (1320 perm/sec)   p_kst 2.419355e-06   p_cons 1.086097e-01   p_joint 1.451613e-05

Joint ci ratio: 8.554066e-01	ci left: 9.773242e-06	ci right 2.471059e-05	k: 20	n:1250000
Cons ci ratio: 1.004468e-02	ci left: 1.080615e-01	ci right 1.091532e-01	k: 135758	n:1250000
KS ci ratio: 1.753073e+00	ci left: 8.718930e-07	ci right 8.193250e-06	k: 4	n:1250000
RPAP2   1250000 perm   953 sec   (1312 perm/sec)   p_kst 3.200000e-06   p_cons 1.086064e-01   p_joint 1.600000e-05

Joint ci ratio: 8.554067e-01	ci left: 9.695677e-06	ci right 2.451448e-05	k: 20	n:1260000
Cons ci ratio: 1.000294e-02	ci left: 1.080984e-01	ci right 1.091859e-01	k: 136888	n:1260000
KS ci ratio: 1.753073e+00	ci left: 8.649732e-07	ci right 8.128225e-06	k: 4	n:1260000
RPAP2   1260000 perm   966 sec   (1305 perm/sec)   p_kst 3.174603e-06   p_cons 1.086413e-01   p_joint 1.587302e-05

Joint ci ratio: 8.554067e-01	ci left: 9.619332e-06	ci right 2.432145e-05	k: 20	n:1270000
Cons ci ratio: 9.965444e-03	ci left: 1.080625e-01	ci right 1.091456e-01	k: 137926	n:1270000
KS ci ratio: 1.753073e+00	ci left: 8.581624e-07	ci right 8.064223e-06	k: 4	n:1270000
RPAP2   1270000 perm   979 sec   (1297 perm/sec)   p_kst 3.149606e-06   p_cons 1.086031e-01   p_joint 1.574803e-05

Joint ci ratio: 8.554068e-01	ci left: 9.544181e-06	ci right 2.413144e-05	k: 20	n:1280000
Cons ci ratio: 9.923639e-03	ci left: 1.081192e-01	ci right 1.091982e-01	k: 139082	n:1280000
KS ci ratio: 1.753073e+00	ci left: 8.514580e-07	ci right 8.001222e-06	k: 4	n:1280000
RPAP2   1280000 perm   992 sec   (1291 perm/sec)   p_kst 3.125000e-06   p_cons 1.086578e-01   p_joint 1.562500e-05

Joint ci ratio: 8.554068e-01	ci left: 9.470195e-06	ci right 2.394438e-05	k: 20	n:1290000
Cons ci ratio: 9.884768e-03	ci left: 1.081278e-01	ci right 1.092027e-01	k: 140177	n:1290000
KS ci ratio: 1.753073e+00	ci left: 8.448575e-07	ci right 7.939197e-06	k: 4	n:1290000
RPAP2   1290000 perm   1005 sec   (1284 perm/sec)   p_kst 3.100775e-06   p_cons 1.086643e-01   p_joint 1.550388e-05

Joint ci ratio: 8.554069e-01	ci left: 9.397347e-06	ci right 2.376019e-05	k: 20	n:1300000
Cons ci ratio: 9.847992e-03	ci left: 1.081040e-01	ci right 1.091746e-01	k: 141230	n:1300000
KS ci ratio: 1.753073e+00	ci left: 8.383586e-07	ci right 7.878126e-06	k: 4	n:1300000
RPAP2   1300000 perm   1018 sec   (1277 perm/sec)   p_kst 3.076923e-06   p_cons 1.086385e-01   p_joint 1.538462e-05

Joint ci ratio: 8.357395e-01	ci left: 9.923180e-06	ci right 2.450427e-05	k: 21	n:1310000
Cons ci ratio: 9.809497e-03	ci left: 1.081225e-01	ci right 1.091891e-01	k: 142338	n:1310000
KS ci ratio: 1.600329e+00	ci left: 1.239304e-06	ci right 8.907101e-06	k: 5	n:1310000
RPAP2   1310000 perm   1032 sec   (1270 perm/sec)   p_kst 3.816794e-06   p_cons 1.086550e-01   p_joint 1.603053e-05

Joint ci ratio: 8.357395e-01	ci left: 9.848004e-06	ci right 2.431863e-05	k: 21	n:1320000
Cons ci ratio: 9.773322e-03	ci left: 1.081037e-01	ci right 1.091662e-01	k: 143397	n:1320000
KS ci ratio: 1.600329e+00	ci left: 1.229915e-06	ci right 8.839623e-06	k: 5	n:1320000
RPAP2   1320000 perm   1045 sec   (1263 perm/sec)   p_kst 3.787879e-06   p_cons 1.086341e-01   p_joint 1.590909e-05

Joint ci ratio: 8.357396e-01	ci left: 9.773959e-06	ci right 2.413579e-05	k: 21	n:1330000
Cons ci ratio: 9.737659e-03	ci left: 1.080830e-01	ci right 1.091413e-01	k: 144453	n:1330000
KS ci ratio: 1.600329e+00	ci left: 1.220668e-06	ci right 8.773160e-06	k: 5	n:1330000
RPAP2   1330000 perm   1059 sec   (1256 perm/sec)   p_kst 3.759398e-06   p_cons 1.086113e-01   p_joint 1.578947e-05

Joint ci ratio: 8.357396e-01	ci left: 9.701019e-06	ci right 2.395567e-05	k: 21	n:1340000
Cons ci ratio: 9.701560e-03	ci left: 1.080789e-01	ci right 1.091333e-01	k: 145531	n:1340000
KS ci ratio: 1.600329e+00	ci left: 1.211558e-06	ci right 8.707689e-06	k: 5	n:1340000
RPAP2   1340000 perm   1072 sec   (1250 perm/sec)   p_kst 3.731343e-06   p_cons 1.086052e-01   p_joint 1.567164e-05

Joint ci ratio: 8.173692e-01	ci left: 1.021283e-05	ci right 2.467269e-05	k: 22	n:1350000
Cons ci ratio: 9.667043e-03	ci left: 1.080512e-01	ci right 1.091016e-01	k: 146577	n:1350000
KS ci ratio: 1.481616e+00	ci left: 1.631034e-06	ci right 9.673659e-06	k: 6	n:1350000
RPAP2   1350000 perm   1086 sec   (1243 perm/sec)   p_kst 4.444444e-06   p_cons 1.085756e-01   p_joint 1.629630e-05

Joint ci ratio: 8.357397e-01	ci left: 9.558356e-06	ci right 2.360338e-05	k: 21	n:1360000
Cons ci ratio: 9.630111e-03	ci left: 1.080798e-01	ci right 1.091263e-01	k: 147699	n:1360000
KS ci ratio: 1.481616e+00	ci left: 1.619042e-06	ci right 9.602530e-06	k: 6	n:1360000
RPAP2   1360000 perm   1100 sec   (1237 perm/sec)   p_kst 4.411765e-06   p_cons 1.086022e-01   p_joint 1.544118e-05

Joint ci ratio: 8.357398e-01	ci left: 9.488587e-06	ci right 2.343110e-05	k: 21	n:1370000
Cons ci ratio: 9.595118e-03	ci left: 1.080773e-01	ci right 1.091200e-01	k: 148779	n:1370000
KS ci ratio: 1.481616e+00	ci left: 1.607224e-06	ci right 9.532438e-06	k: 6	n:1370000
RPAP2   1370000 perm   1114 sec   (1230 perm/sec)   p_kst 4.379562e-06   p_cons 1.085978e-01   p_joint 1.532847e-05

Joint ci ratio: 8.173694e-01	ci left: 9.990811e-06	ci right 2.413632e-05	k: 22	n:1380000
Cons ci ratio: 9.559002e-03	ci left: 1.081052e-01	ci right 1.091443e-01	k: 149901	n:1380000
KS ci ratio: 1.481616e+00	ci left: 1.595577e-06	ci right 9.463363e-06	k: 6	n:1380000
RPAP2   1380000 perm   1128 sec   (1223 perm/sec)   p_kst 4.347826e-06   p_cons 1.086239e-01   p_joint 1.594203e-05

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 9.523750e-03	ci left: 1.081234e-01	ci right 1.091588e-01	k: 151010	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
RPAP2   1390000 perm   1142 sec   (1217 perm/sec)   p_kst 7.194245e-07   p_cons 1.086403e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 9.489095e-03	ci left: 1.081371e-01	ci right 1.091688e-01	k: 152113	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
RPAP2   1400000 perm   1157 sec   (1210 perm/sec)   p_kst 7.142857e-07   p_cons 1.086521e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 9.454712e-03	ci left: 1.081527e-01	ci right 1.091808e-01	k: 153219	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
RPAP2   1410000 perm   1171 sec   (1204 perm/sec)   p_kst 7.092199e-07   p_cons 1.086660e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 9.420768e-03	ci left: 1.081667e-01	ci right 1.091912e-01	k: 154323	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
RPAP2   1420000 perm   1185 sec   (1198 perm/sec)   p_kst 7.042254e-07   p_cons 1.086782e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 9.388611e-03	ci left: 1.081512e-01	ci right 1.091721e-01	k: 155385	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
RPAP2   1430000 perm   1200 sec   (1192 perm/sec)   p_kst 6.993007e-07   p_cons 1.086608e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 9.354064e-03	ci left: 1.081921e-01	ci right 1.092095e-01	k: 156528	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
RPAP2   1440000 perm   1214 sec   (1186 perm/sec)   p_kst 6.944444e-07   p_cons 1.087000e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 9.321521e-03	ci left: 1.081986e-01	ci right 1.092126e-01	k: 157622	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
RPAP2   1450000 perm   1229 sec   (1180 perm/sec)   p_kst 6.896552e-07   p_cons 1.087048e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 9.289052e-03	ci left: 1.082106e-01	ci right 1.092211e-01	k: 158724	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
RPAP2   1460000 perm   1244 sec   (1174 perm/sec)   p_kst 6.849315e-07   p_cons 1.087151e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 9.256986e-03	ci left: 1.082210e-01	ci right 1.092281e-01	k: 159824	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
RPAP2   1470000 perm   1258 sec   (1168 perm/sec)   p_kst 6.802721e-07   p_cons 1.087238e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 9.594181e-03	ci left: 1.008764e-01	ci right 1.018495e-01	k: 150016	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
RPAP2   1480000 perm   1273 sec   (1162 perm/sec)   p_kst 6.756757e-07   p_cons 1.013622e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 9.561496e-03	ci left: 1.008863e-01	ci right 1.018562e-01	k: 151042	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
RPAP2   1490000 perm   1288 sec   (1156 perm/sec)   p_kst 6.711409e-07   p_cons 1.013705e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 9.529805e-03	ci left: 1.008834e-01	ci right 1.018501e-01	k: 152049	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
RPAP2   1500000 perm   1304 sec   (1151 perm/sec)   p_kst 6.666667e-07   p_cons 1.013660e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 9.498289e-03	ci left: 1.008833e-01	ci right 1.018467e-01	k: 153060	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
RPAP2   1510000 perm   1319 sec   (1145 perm/sec)   p_kst 6.622517e-07   p_cons 1.013642e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 9.467972e-03	ci left: 1.008661e-01	ci right 1.018262e-01	k: 154045	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
RPAP2   1520000 perm   1334 sec   (1139 perm/sec)   p_kst 6.578947e-07   p_cons 1.013454e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 9.436861e-03	ci left: 1.008699e-01	ci right 1.018270e-01	k: 155062	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
RPAP2   1530000 perm   1349 sec   (1134 perm/sec)   p_kst 6.535948e-07   p_cons 1.013477e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 9.406188e-03	ci left: 1.008712e-01	ci right 1.018251e-01	k: 156075	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
RPAP2   1540000 perm   1365 sec   (1128 perm/sec)   p_kst 6.493506e-07   p_cons 1.013474e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 9.375646e-03	ci left: 1.008756e-01	ci right 1.018265e-01	k: 157093	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
RPAP2   1550000 perm   1381 sec   (1122 perm/sec)   p_kst 6.451613e-07   p_cons 1.013503e-01   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 9.345302e-03	ci left: 1.008820e-01	ci right 1.018298e-01	k: 158114	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
RPAP2   1560000 perm   1396 sec   (1117 perm/sec)   p_kst 6.410256e-07   p_cons 1.013551e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 9.315380e-03	ci left: 1.008857e-01	ci right 1.018305e-01	k: 159131	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
RPAP2   1570000 perm   1412 sec   (1112 perm/sec)   p_kst 6.369427e-07   p_cons 1.013573e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 9.287067e-03	ci left: 1.008634e-01	ci right 1.018051e-01	k: 160107	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
RPAP2   1580000 perm   1428 sec   (1107 perm/sec)   p_kst 6.329114e-07   p_cons 1.013335e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 9.258083e-03	ci left: 1.008597e-01	ci right 1.017984e-01	k: 161112	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
RPAP2   1590000 perm   1443 sec   (1102 perm/sec)   p_kst 6.289308e-07   p_cons 1.013283e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 9.228165e-03	ci left: 1.008797e-01	ci right 1.018155e-01	k: 162155	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
RPAP2   1600000 perm   1459 sec   (1097 perm/sec)   p_kst 6.250000e-07   p_cons 1.013469e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 9.199288e-03	ci left: 1.008845e-01	ci right 1.018175e-01	k: 163174	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
RPAP2   1610000 perm   1475 sec   (1092 perm/sec)   p_kst 6.211180e-07   p_cons 1.013503e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 9.172204e-03	ci left: 1.008592e-01	ci right 1.017892e-01	k: 164144	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
RPAP2   1620000 perm   1490 sec   (1087 perm/sec)   p_kst 6.172840e-07   p_cons 1.013235e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 9.143385e-03	ci left: 1.008733e-01	ci right 1.018005e-01	k: 165178	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
RPAP2   1630000 perm   1507 sec   (1082 perm/sec)   p_kst 6.134969e-07   p_cons 1.013362e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 9.114440e-03	ci left: 1.008952e-01	ci right 1.018196e-01	k: 166225	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
RPAP2   1640000 perm   1523 sec   (1077 perm/sec)   p_kst 6.097561e-07   p_cons 1.013567e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 9.084107e-03	ci left: 1.009501e-01	ci right 1.018719e-01	k: 167327	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
RPAP2   1650000 perm   1539 sec   (1072 perm/sec)   p_kst 6.060606e-07   p_cons 1.014103e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 9.056408e-03	ci left: 1.009574e-01	ci right 1.018765e-01	k: 168351	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
RPAP2   1660000 perm   1556 sec   (1067 perm/sec)   p_kst 6.024096e-07   p_cons 1.014163e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 9.029435e-03	ci left: 1.009551e-01	ci right 1.018714e-01	k: 169359	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
RPAP2   1670000 perm   1572 sec   (1062 perm/sec)   p_kst 5.988024e-07   p_cons 1.014126e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 9.003143e-03	ci left: 1.009439e-01	ci right 1.018574e-01	k: 170352	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
RPAP2   1680000 perm   1588 sec   (1058 perm/sec)   p_kst 5.952381e-07   p_cons 1.014000e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 8.977225e-03	ci left: 1.009299e-01	ci right 1.018407e-01	k: 171340	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
RPAP2   1690000 perm   1605 sec   (1053 perm/sec)   p_kst 5.917160e-07   p_cons 1.013846e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 8.951674e-03	ci left: 1.009132e-01	ci right 1.018211e-01	k: 172323	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
RPAP2   1700000 perm   1622 sec   (1048 perm/sec)   p_kst 5.882353e-07   p_cons 1.013665e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 8.925366e-03	ci left: 1.009164e-01	ci right 1.018218e-01	k: 173340	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
RPAP2   1710000 perm   1639 sec   (1043 perm/sec)   p_kst 5.847953e-07   p_cons 1.013684e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 8.899260e-03	ci left: 1.009203e-01	ci right 1.018229e-01	k: 174358	n:1720000
KS ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
RPAP2   1720000 perm   1656 sec   (1039 perm/sec)   p_kst 5.813953e-07   p_cons 1.013709e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 8.871918e-03	ci left: 1.009540e-01	ci right 1.018542e-01	k: 175428	n:1730000
KS ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
RPAP2   1730000 perm   1673 sec   (1034 perm/sec)   p_kst 5.780347e-07   p_cons 1.014035e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 8.847197e-03	ci left: 1.009387e-01	ci right 1.018362e-01	k: 176413	n:1740000
KS ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
RPAP2   1740000 perm   1690 sec   (1030 perm/sec)   p_kst 5.747126e-07   p_cons 1.013868e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 8.821880e-03	ci left: 1.009400e-01	ci right 1.018350e-01	k: 177427	n:1750000
KS ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
RPAP2   1750000 perm   1707 sec   (1025 perm/sec)   p_kst 5.714286e-07   p_cons 1.013869e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 8.796312e-03	ci left: 1.009510e-01	ci right 1.018435e-01	k: 178458	n:1760000
KS ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
RPAP2   1760000 perm   1724 sec   (1021 perm/sec)   p_kst 5.681818e-07   p_cons 1.013966e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 8.770313e-03	ci left: 1.009754e-01	ci right 1.018654e-01	k: 179513	n:1770000
KS ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
RPAP2   1770000 perm   1742 sec   (1016 perm/sec)   p_kst 5.649718e-07   p_cons 1.014198e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 8.745837e-03	ci left: 1.009726e-01	ci right 1.018601e-01	k: 180520	n:1780000
KS ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
RPAP2   1780000 perm   1759 sec   (1012 perm/sec)   p_kst 5.617978e-07   p_cons 1.014157e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 8.720255e-03	ci left: 1.009972e-01	ci right 1.018823e-01	k: 181576	n:1790000
KS ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
RPAP2   1790000 perm   1777 sec   (1007 perm/sec)   p_kst 5.586592e-07   p_cons 1.014391e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 8.696327e-03	ci left: 1.009915e-01	ci right 1.018742e-01	k: 182578	n:1800000
KS ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
RPAP2   1800000 perm   1795 sec   (1003 perm/sec)   p_kst 5.555556e-07   p_cons 1.014322e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 8.671753e-03	ci left: 1.010036e-01	ci right 1.018838e-01	k: 183612	n:1810000
KS ci ratio: 2.263211e+00	ci left: 1.338173e-07	ci right 3.991534e-06	k: 2	n:1810000
RPAP2   1810000 perm   1812 sec   (999 perm/sec)   p_kst 1.104972e-06   p_cons 1.014431e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 8.646553e-03	ci left: 1.010331e-01	ci right 1.019110e-01	k: 184678	n:1820000
KS ci ratio: 2.263211e+00	ci left: 1.330820e-07	ci right 3.969603e-06	k: 2	n:1820000
RPAP2   1820000 perm   1830 sec   (995 perm/sec)   p_kst 1.098901e-06   p_cons 1.014714e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 8.622579e-03	ci left: 1.010410e-01	ci right 1.019165e-01	k: 185705	n:1830000
KS ci ratio: 2.263211e+00	ci left: 1.323548e-07	ci right 3.947911e-06	k: 2	n:1830000
RPAP2   1830000 perm   1847 sec   (991 perm/sec)   p_kst 1.092896e-06   p_cons 1.014781e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 8.598573e-03	ci left: 1.010537e-01	ci right 1.019269e-01	k: 186741	n:1840000
KS ci ratio: 2.263211e+00	ci left: 1.316355e-07	ci right 3.926455e-06	k: 2	n:1840000
RPAP2   1840000 perm   1865 sec   (986 perm/sec)   p_kst 1.086957e-06   p_cons 1.014897e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 8.576037e-03	ci left: 1.010393e-01	ci right 1.019101e-01	k: 187727	n:1850000
KS ci ratio: 2.263211e+00	ci left: 1.309240e-07	ci right 3.905231e-06	k: 2	n:1850000
RPAP2   1850000 perm   1884 sec   (982 perm/sec)   p_kst 1.081081e-06   p_cons 1.014741e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 8.553021e-03	ci left: 1.010390e-01	ci right 1.019074e-01	k: 188739	n:1860000
KS ci ratio: 2.263211e+00	ci left: 1.302201e-07	ci right 3.884235e-06	k: 2	n:1860000
RPAP2   1860000 perm   1902 sec   (978 perm/sec)   p_kst 1.075269e-06   p_cons 1.014726e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 8.530665e-03	ci left: 1.010286e-01	ci right 1.018946e-01	k: 189732	n:1870000
KS ci ratio: 2.263211e+00	ci left: 1.295237e-07	ci right 3.863464e-06	k: 2	n:1870000
RPAP2   1870000 perm   1921 sec   (973 perm/sec)   p_kst 1.069519e-06   p_cons 1.014610e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 8.507838e-03	ci left: 1.010320e-01	ci right 1.018958e-01	k: 190751	n:1880000
KS ci ratio: 2.263211e+00	ci left: 1.288347e-07	ci right 3.842914e-06	k: 2	n:1880000
RPAP2   1880000 perm   1942 sec   (968 perm/sec)   p_kst 1.063830e-06   p_cons 1.014633e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 8.485045e-03	ci left: 1.010387e-01	ci right 1.019001e-01	k: 191776	n:1890000
KS ci ratio: 2.263211e+00	ci left: 1.281531e-07	ci right 3.822581e-06	k: 2	n:1890000
RPAP2   1890000 perm   1962 sec   (963 perm/sec)   p_kst 1.058201e-06   p_cons 1.014688e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 8.463510e-03	ci left: 1.010221e-01	ci right 1.018812e-01	k: 192757	n:1900000
KS ci ratio: 2.263211e+00	ci left: 1.274786e-07	ci right 3.802462e-06	k: 2	n:1900000
RPAP2   1900000 perm   1980 sec   (960 perm/sec)   p_kst 1.052632e-06   p_cons 1.014511e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 8.440635e-03	ci left: 1.010381e-01	ci right 1.018950e-01	k: 193800	n:1910000
KS ci ratio: 2.263211e+00	ci left: 1.268112e-07	ci right 3.782554e-06	k: 2	n:1910000
RPAP2   1910000 perm   1998 sec   (956 perm/sec)   p_kst 1.047120e-06   p_cons 1.014660e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 8.418834e-03	ci left: 1.010347e-01	ci right 1.018894e-01	k: 194806	n:1920000
KS ci ratio: 2.263211e+00	ci left: 1.261507e-07	ci right 3.762853e-06	k: 2	n:1920000
RPAP2   1920000 perm   2017 sec   (952 perm/sec)   p_kst 1.041667e-06   p_cons 1.014615e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 8.396175e-03	ci left: 1.010536e-01	ci right 1.019061e-01	k: 195855	n:1930000
KS ci ratio: 2.263211e+00	ci left: 1.254971e-07	ci right 3.743356e-06	k: 2	n:1930000
RPAP2   1930000 perm   2037 sec   (948 perm/sec)   p_kst 1.036269e-06   p_cons 1.014793e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 8.375165e-03	ci left: 1.010404e-01	ci right 1.018907e-01	k: 196842	n:1940000
KS ci ratio: 2.263211e+00	ci left: 1.248502e-07	ci right 3.724061e-06	k: 2	n:1940000
RPAP2   1940000 perm   2056 sec   (944 perm/sec)   p_kst 1.030928e-06   p_cons 1.014649e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 8.353208e-03	ci left: 1.010514e-01	ci right 1.018995e-01	k: 197876	n:1950000
KS ci ratio: 2.263211e+00	ci left: 1.242099e-07	ci right 3.704963e-06	k: 2	n:1950000
RPAP2   1950000 perm   2074 sec   (940 perm/sec)   p_kst 1.025641e-06   p_cons 1.014749e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 8.331377e-03	ci left: 1.010633e-01	ci right 1.019093e-01	k: 198912	n:1960000
KS ci ratio: 2.263211e+00	ci left: 1.235762e-07	ci right 3.686060e-06	k: 2	n:1960000
RPAP2   1960000 perm   2095 sec   (935 perm/sec)   p_kst 1.020408e-06   p_cons 1.014857e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 8.308767e-03	ci left: 1.010959e-01	ci right 1.019398e-01	k: 199989	n:1970000
KS ci ratio: 2.263211e+00	ci left: 1.229489e-07	ci right 3.667349e-06	k: 2	n:1970000
RPAP2   1970000 perm   2114 sec   (932 perm/sec)   p_kst 1.015228e-06   p_cons 1.015173e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 8.287350e-03	ci left: 1.011059e-01	ci right 1.019478e-01	k: 201022	n:1980000
KS ci ratio: 2.263211e+00	ci left: 1.223279e-07	ci right 3.648827e-06	k: 2	n:1980000
RPAP2   1980000 perm   2137 sec   (927 perm/sec)   p_kst 1.010101e-06   p_cons 1.015263e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 8.265847e-03	ci left: 1.011214e-01	ci right 1.019612e-01	k: 202066	n:1990000
KS ci ratio: 2.263211e+00	ci left: 1.217132e-07	ci right 3.630492e-06	k: 2	n:1990000
RPAP2   1990000 perm   2158 sec   (922 perm/sec)   p_kst 1.005025e-06   p_cons 1.015407e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 8.244533e-03	ci left: 1.011362e-01	ci right 1.019740e-01	k: 203109	n:2000000
KS ci ratio: 2.263211e+00	ci left: 1.211047e-07	ci right 3.612339e-06	k: 2	n:2000000
RPAP2   2000000 perm   2178 sec   (918 perm/sec)   p_kst 1.000000e-06   p_cons 1.015545e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 8.223316e-03	ci left: 1.011524e-01	ci right 1.019881e-01	k: 204155	n:2010000
KS ci ratio: 2.263211e+00	ci left: 1.205022e-07	ci right 3.594367e-06	k: 2	n:2010000
RPAP2   2010000 perm   2197 sec   (915 perm/sec)   p_kst 9.950249e-07   p_cons 1.015697e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 8.202551e-03	ci left: 1.011619e-01	ci right 1.019956e-01	k: 205188	n:2020000
KS ci ratio: 2.263211e+00	ci left: 1.199056e-07	ci right 3.576573e-06	k: 2	n:2020000
RPAP2   2020000 perm   2217 sec   (911 perm/sec)   p_kst 9.900990e-07   p_cons 1.015782e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 8.182076e-03	ci left: 1.011685e-01	ci right 1.020001e-01	k: 206215	n:2030000
KS ci ratio: 2.263211e+00	ci left: 1.193149e-07	ci right 3.558955e-06	k: 2	n:2030000
RPAP2   2030000 perm   2237 sec   (907 perm/sec)   p_kst 9.852217e-07   p_cons 1.015837e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 8.162147e-03	ci left: 1.011662e-01	ci right 1.019958e-01	k: 207224	n:2040000
KS ci ratio: 2.263211e+00	ci left: 1.187301e-07	ci right 3.541509e-06	k: 2	n:2040000
RPAP2   2040000 perm   2257 sec   (904 perm/sec)   p_kst 9.803922e-07   p_cons 1.015804e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 8.141580e-03	ci left: 1.011814e-01	ci right 1.020090e-01	k: 208269	n:2050000
KS ci ratio: 1.959998e+00	ci left: 3.017914e-07	ci right 4.276713e-06	k: 3	n:2050000
RPAP2   2050000 perm   2277 sec   (900 perm/sec)   p_kst 1.463415e-06   p_cons 1.015946e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 8.121318e-03	ci left: 1.011931e-01	ci right 1.020187e-01	k: 209307	n:2060000
KS ci ratio: 1.959998e+00	ci left: 3.003264e-07	ci right 4.255952e-06	k: 3	n:2060000
RPAP2   2060000 perm   2298 sec   (897 perm/sec)   p_kst 1.456311e-06   p_cons 1.016053e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 8.101336e-03	ci left: 1.012018e-01	ci right 1.020254e-01	k: 210339	n:2070000
KS ci ratio: 1.959998e+00	ci left: 2.988755e-07	ci right 4.235392e-06	k: 3	n:2070000
RPAP2   2070000 perm   2318 sec   (893 perm/sec)   p_kst 1.449275e-06   p_cons 1.016130e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 8.081054e-03	ci left: 1.012204e-01	ci right 1.020422e-01	k: 211392	n:2080000
KS ci ratio: 1.959998e+00	ci left: 2.974386e-07	ci right 4.215029e-06	k: 3	n:2080000
RPAP2   2080000 perm   2340 sec   (889 perm/sec)   p_kst 1.442308e-06   p_cons 1.016308e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 8.062191e-03	ci left: 1.012103e-01	ci right 1.020300e-01	k: 212385	n:2090000
KS ci ratio: 1.959998e+00	ci left: 2.960155e-07	ci right 4.194862e-06	k: 3	n:2090000
RPAP2   2090000 perm   2360 sec   (886 perm/sec)   p_kst 1.435407e-06   p_cons 1.016196e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 8.042095e-03	ci left: 1.012311e-01	ci right 1.020490e-01	k: 213443	n:2100000
KS ci ratio: 1.959998e+00	ci left: 2.946059e-07	ci right 4.174886e-06	k: 3	n:2100000
RPAP2   2100000 perm   2380 sec   (882 perm/sec)   p_kst 1.428571e-06   p_cons 1.016395e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 8.023003e-03	ci left: 1.012324e-01	ci right 1.020483e-01	k: 214460	n:2110000
KS ci ratio: 1.959998e+00	ci left: 2.932096e-07	ci right 4.155100e-06	k: 3	n:2110000
RPAP2   2110000 perm   2400 sec   (879 perm/sec)   p_kst 1.421801e-06   p_cons 1.016398e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 8.004129e-03	ci left: 1.012318e-01	ci right 1.020457e-01	k: 215473	n:2120000
KS ci ratio: 1.959998e+00	ci left: 2.918266e-07	ci right 4.135501e-06	k: 3	n:2120000
RPAP2   2120000 perm   2421 sec   (876 perm/sec)   p_kst 1.415094e-06   p_cons 1.016382e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 7.984895e-03	ci left: 1.012424e-01	ci right 1.020545e-01	k: 216510	n:2130000
KS ci ratio: 1.959998e+00	ci left: 2.904565e-07	ci right 4.116085e-06	k: 3	n:2130000
RPAP2   2130000 perm   2442 sec   (872 perm/sec)   p_kst 1.408451e-06   p_cons 1.016479e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 7.966206e-03	ci left: 1.012436e-01	ci right 1.020538e-01	k: 217527	n:2140000
KS ci ratio: 1.959998e+00	ci left: 2.890992e-07	ci right 4.096851e-06	k: 3	n:2140000
RPAP2   2140000 perm   2463 sec   (869 perm/sec)   p_kst 1.401869e-06   p_cons 1.016481e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 7.948377e-03	ci left: 1.012280e-01	ci right 1.020363e-01	k: 218508	n:2150000
KS ci ratio: 1.959998e+00	ci left: 2.877546e-07	ci right 4.077796e-06	k: 3	n:2150000
RPAP2   2150000 perm   2484 sec   (866 perm/sec)   p_kst 1.395349e-06   p_cons 1.016316e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 7.929259e-03	ci left: 1.012450e-01	ci right 1.020514e-01	k: 219559	n:2160000
KS ci ratio: 1.959998e+00	ci left: 2.864224e-07	ci right 4.058917e-06	k: 3	n:2160000
RPAP2   2160000 perm   2504 sec   (863 perm/sec)   p_kst 1.388889e-06   p_cons 1.016477e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 7.910638e-03	ci left: 1.012535e-01	ci right 1.020581e-01	k: 220592	n:2170000
KS ci ratio: 1.959998e+00	ci left: 2.851025e-07	ci right 4.040213e-06	k: 3	n:2170000
RPAP2   2170000 perm   2525 sec   (859 perm/sec)   p_kst 1.382488e-06   p_cons 1.016553e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 7.892346e-03	ci left: 1.012574e-01	ci right 1.020602e-01	k: 221615	n:2180000
KS ci ratio: 1.959998e+00	ci left: 2.837946e-07	ci right 4.021680e-06	k: 3	n:2180000
RPAP2   2180000 perm   2546 sec   (856 perm/sec)   p_kst 1.376147e-06   p_cons 1.016583e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 7.874554e-03	ci left: 1.012526e-01	ci right 1.020535e-01	k: 222619	n:2190000
KS ci ratio: 1.959998e+00	ci left: 2.824988e-07	ci right 4.003316e-06	k: 3	n:2190000
RPAP2   2190000 perm   2567 sec   (853 perm/sec)   p_kst 1.369863e-06   p_cons 1.016525e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 7.855846e-03	ci left: 1.012719e-01	ci right 1.020710e-01	k: 223676	n:2200000
KS ci ratio: 1.959998e+00	ci left: 2.812147e-07	ci right 3.985119e-06	k: 3	n:2200000
RPAP2   2200000 perm   2589 sec   (850 perm/sec)   p_kst 1.363636e-06   p_cons 1.016709e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 7.838435e-03	ci left: 1.012639e-01	ci right 1.020612e-01	k: 224673	n:2210000
KS ci ratio: 1.959998e+00	ci left: 2.799422e-07	ci right 3.967087e-06	k: 3	n:2210000
RPAP2   2210000 perm   2610 sec   (847 perm/sec)   p_kst 1.357466e-06   p_cons 1.016620e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 7.820831e-03	ci left: 1.012631e-01	ci right 1.020586e-01	k: 225686	n:2220000
KS ci ratio: 1.959998e+00	ci left: 2.786812e-07	ci right 3.949217e-06	k: 3	n:2220000
RPAP2   2220000 perm   2631 sec   (844 perm/sec)   p_kst 1.351351e-06   p_cons 1.016604e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 7.802981e-03	ci left: 1.012709e-01	ci right 1.020647e-01	k: 226718	n:2230000
KS ci ratio: 1.959998e+00	ci left: 2.774315e-07	ci right 3.931508e-06	k: 3	n:2230000
RPAP2   2230000 perm   2654 sec   (840 perm/sec)   p_kst 1.345291e-06   p_cons 1.016673e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 7.785671e-03	ci left: 1.012688e-01	ci right 1.020608e-01	k: 227728	n:2240000
KS ci ratio: 1.959998e+00	ci left: 2.761930e-07	ci right 3.913956e-06	k: 3	n:2240000
RPAP2   2240000 perm   2676 sec   (837 perm/sec)   p_kst 1.339286e-06   p_cons 1.016643e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 7.472810e-03	ci left: 1.085642e-01	ci right 1.093790e-01	k: 245185	n:2250000
KS ci ratio: 1.959998e+00	ci left: 2.749655e-07	ci right 3.896561e-06	k: 3	n:2250000
RPAP2   2250000 perm   2697 sec   (834 perm/sec)   p_kst 1.333333e-06   p_cons 1.089711e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 7.456781e-03	ci left: 1.085516e-01	ci right 1.093645e-01	k: 246244	n:2260000
KS ci ratio: 1.959998e+00	ci left: 2.737488e-07	ci right 3.879319e-06	k: 3	n:2260000
RPAP2   2260000 perm   2719 sec   (831 perm/sec)   p_kst 1.327434e-06   p_cons 1.089575e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 7.440669e-03	ci left: 1.085439e-01	ci right 1.093549e-01	k: 247314	n:2270000
KS ci ratio: 1.959998e+00	ci left: 2.725429e-07	ci right 3.862230e-06	k: 3	n:2270000
RPAP2   2270000 perm   2740 sec   (828 perm/sec)   p_kst 1.321586e-06   p_cons 1.089489e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 7.424509e-03	ci left: 1.085402e-01	ci right 1.093494e-01	k: 248393	n:2280000
KS ci ratio: 1.959998e+00	ci left: 2.713475e-07	ci right 3.845290e-06	k: 3	n:2280000
RPAP2   2280000 perm   2762 sec   (825 perm/sec)   p_kst 1.315789e-06   p_cons 1.089443e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 7.408472e-03	ci left: 1.085360e-01	ci right 1.093435e-01	k: 249471	n:2290000
KS ci ratio: 1.959998e+00	ci left: 2.701626e-07	ci right 3.828499e-06	k: 3	n:2290000
RPAP2   2290000 perm   2784 sec   (822 perm/sec)   p_kst 1.310044e-06   p_cons 1.089393e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 7.391462e-03	ci left: 1.085602e-01	ci right 1.093660e-01	k: 250614	n:2300000
KS ci ratio: 1.959998e+00	ci left: 2.689880e-07	ci right 3.811853e-06	k: 3	n:2300000
RPAP2   2300000 perm   2807 sec   (819 perm/sec)   p_kst 1.304348e-06   p_cons 1.089626e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 7.374699e-03	ci left: 1.085807e-01	ci right 1.093848e-01	k: 251749	n:2310000
KS ci ratio: 1.959998e+00	ci left: 2.678235e-07	ci right 3.795352e-06	k: 3	n:2310000
RPAP2   2310000 perm   2829 sec   (817 perm/sec)   p_kst 1.298701e-06   p_cons 1.089823e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 7.359357e-03	ci left: 1.085666e-01	ci right 1.093689e-01	k: 252804	n:2320000
KS ci ratio: 1.959998e+00	ci left: 2.666691e-07	ci right 3.778992e-06	k: 3	n:2320000
RPAP2   2320000 perm   2851 sec   (814 perm/sec)   p_kst 1.293103e-06   p_cons 1.089672e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 7.343608e-03	ci left: 1.085658e-01	ci right 1.093665e-01	k: 253890	n:2330000
KS ci ratio: 1.959998e+00	ci left: 2.655246e-07	ci right 3.762773e-06	k: 3	n:2330000
RPAP2   2330000 perm   2874 sec   (811 perm/sec)   p_kst 1.287554e-06   p_cons 1.089657e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 7.327974e-03	ci left: 1.085647e-01	ci right 1.093636e-01	k: 254975	n:2340000
KS ci ratio: 1.959998e+00	ci left: 2.643899e-07	ci right 3.746693e-06	k: 3	n:2340000
RPAP2   2340000 perm   2897 sec   (808 perm/sec)   p_kst 1.282051e-06   p_cons 1.089637e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 7.311880e-03	ci left: 1.085785e-01	ci right 1.093757e-01	k: 256095	n:2350000
KS ci ratio: 1.959998e+00	ci left: 2.632648e-07	ci right 3.730750e-06	k: 3	n:2350000
RPAP2   2350000 perm   2919 sec   (805 perm/sec)   p_kst 1.276596e-06   p_cons 1.089766e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 7.295907e-03	ci left: 1.085917e-01	ci right 1.093873e-01	k: 257214	n:2360000
KS ci ratio: 1.959998e+00	ci left: 2.621493e-07	ci right 3.714942e-06	k: 3	n:2360000
RPAP2   2360000 perm   2941 sec   (802 perm/sec)   p_kst 1.271186e-06   p_cons 1.089890e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 7.280623e-03	ci left: 1.085892e-01	ci right 1.093831e-01	k: 258296	n:2370000
KS ci ratio: 1.959998e+00	ci left: 2.610432e-07	ci right 3.699267e-06	k: 3	n:2370000
RPAP2   2370000 perm   2964 sec   (800 perm/sec)   p_kst 1.265823e-06   p_cons 1.089857e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 7.264650e-03	ci left: 1.086077e-01	ci right 1.094000e-01	k: 259428	n:2380000
KS ci ratio: 1.959998e+00	ci left: 2.599463e-07	ci right 3.683724e-06	k: 3	n:2380000
RPAP2   2380000 perm   2986 sec   (797 perm/sec)   p_kst 1.260504e-06   p_cons 1.090034e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 7.249452e-03	ci left: 1.086081e-01	ci right 1.093987e-01	k: 260517	n:2390000
KS ci ratio: 1.959998e+00	ci left: 2.588587e-07	ci right 3.668311e-06	k: 3	n:2390000
RPAP2   2390000 perm   3009 sec   (794 perm/sec)   p_kst 1.255230e-06   p_cons 1.090029e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 7.234147e-03	ci left: 1.086139e-01	ci right 1.094029e-01	k: 261619	n:2400000
KS ci ratio: 1.959998e+00	ci left: 2.577801e-07	ci right 3.653026e-06	k: 3	n:2400000
RPAP2   2400000 perm   3032 sec   (792 perm/sec)   p_kst 1.250000e-06   p_cons 1.090079e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 7.218893e-03	ci left: 1.086209e-01	ci right 1.094083e-01	k: 262724	n:2410000
KS ci ratio: 1.959998e+00	ci left: 2.567105e-07	ci right 3.637868e-06	k: 3	n:2410000
RPAP2   2410000 perm   3055 sec   (789 perm/sec)   p_kst 1.244813e-06   p_cons 1.090141e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 7.204379e-03	ci left: 1.086105e-01	ci right 1.093962e-01	k: 263787	n:2420000
KS ci ratio: 1.959998e+00	ci left: 2.556497e-07	ci right 3.622836e-06	k: 3	n:2420000
RPAP2   2420000 perm   3078 sec   (786 perm/sec)   p_kst 1.239669e-06   p_cons 1.090029e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 7.190165e-03	ci left: 1.085945e-01	ci right 1.093785e-01	k: 264836	n:2430000
KS ci ratio: 1.959998e+00	ci left: 2.545977e-07	ci right 3.607927e-06	k: 3	n:2430000
RPAP2   2430000 perm   3101 sec   (784 perm/sec)   p_kst 1.234568e-06   p_cons 1.089860e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 7.175262e-03	ci left: 1.085994e-01	ci right 1.093818e-01	k: 265936	n:2440000
KS ci ratio: 1.959998e+00	ci left: 2.535542e-07	ci right 3.593140e-06	k: 3	n:2440000
RPAP2   2440000 perm   3124 sec   (781 perm/sec)   p_kst 1.229508e-06   p_cons 1.089902e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 7.160166e-03	ci left: 1.086121e-01	ci right 1.093929e-01	k: 267055	n:2450000
KS ci ratio: 1.959998e+00	ci left: 2.525193e-07	ci right 3.578475e-06	k: 3	n:2450000
RPAP2   2450000 perm   3148 sec   (778 perm/sec)   p_kst 1.224490e-06   p_cons 1.090020e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 7.145673e-03	ci left: 1.086108e-01	ci right 1.093901e-01	k: 268140	n:2460000
KS ci ratio: 1.959998e+00	ci left: 2.514928e-07	ci right 3.563928e-06	k: 3	n:2460000
RPAP2   2460000 perm   3171 sec   (776 perm/sec)   p_kst 1.219512e-06   p_cons 1.090000e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 7.131625e-03	ci left: 1.085999e-01	ci right 1.093775e-01	k: 269201	n:2470000
KS ci ratio: 1.959998e+00	ci left: 2.504746e-07	ci right 3.549499e-06	k: 3	n:2470000
RPAP2   2470000 perm   3195 sec   (773 perm/sec)   p_kst 1.214575e-06   p_cons 1.089883e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 7.117334e-03	ci left: 1.085979e-01	ci right 1.093740e-01	k: 270284	n:2480000
KS ci ratio: 1.959998e+00	ci left: 2.494646e-07	ci right 3.535187e-06	k: 3	n:2480000
RPAP2   2480000 perm   3218 sec   (771 perm/sec)   p_kst 1.209677e-06   p_cons 1.089855e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 7.103260e-03	ci left: 1.085923e-01	ci right 1.093668e-01	k: 271358	n:2490000
KS ci ratio: 1.959998e+00	ci left: 2.484628e-07	ci right 3.520989e-06	k: 3	n:2490000
RPAP2   2490000 perm   3242 sec   (768 perm/sec)   p_kst 1.204819e-06   p_cons 1.089791e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 7.089226e-03	ci left: 1.085880e-01	ci right 1.093609e-01	k: 272435	n:2500000
KS ci ratio: 1.959998e+00	ci left: 2.474689e-07	ci right 3.506905e-06	k: 3	n:2500000
RPAP2   2500000 perm   3266 sec   (766 perm/sec)   p_kst 1.200000e-06   p_cons 1.089740e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 7.074608e-03	ci left: 1.086020e-01	ci right 1.093734e-01	k: 273558	n:2510000
KS ci ratio: 1.959998e+00	ci left: 2.464830e-07	ci right 3.492933e-06	k: 3	n:2510000
RPAP2   2510000 perm   3289 sec   (763 perm/sec)   p_kst 1.195219e-06   p_cons 1.089873e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 7.060122e-03	ci left: 1.086147e-01	ci right 1.093846e-01	k: 274678	n:2520000
KS ci ratio: 1.959998e+00	ci left: 2.455049e-07	ci right 3.479073e-06	k: 3	n:2520000
RPAP2   2520000 perm   3314 sec   (760 perm/sec)   p_kst 1.190476e-06   p_cons 1.089992e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 7.046629e-03	ci left: 1.086024e-01	ci right 1.093708e-01	k: 275735	n:2530000
KS ci ratio: 1.959998e+00	ci left: 2.445345e-07	ci right 3.465321e-06	k: 3	n:2530000
RPAP2   2530000 perm   3338 sec   (758 perm/sec)   p_kst 1.185771e-06   p_cons 1.089862e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 7.032286e-03	ci left: 1.086158e-01	ci right 1.093827e-01	k: 276857	n:2540000
KS ci ratio: 1.959998e+00	ci left: 2.435718e-07	ci right 3.451678e-06	k: 3	n:2540000
RPAP2   2540000 perm   3362 sec   (756 perm/sec)   p_kst 1.181102e-06   p_cons 1.089988e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 7.018554e-03	ci left: 1.086146e-01	ci right 1.093800e-01	k: 277942	n:2550000
KS ci ratio: 1.959998e+00	ci left: 2.426166e-07	ci right 3.438142e-06	k: 3	n:2550000
RPAP2   2550000 perm   3386 sec   (753 perm/sec)   p_kst 1.176471e-06   p_cons 1.089969e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 7.005452e-03	ci left: 1.085982e-01	ci right 1.093620e-01	k: 278988	n:2560000
KS ci ratio: 1.959998e+00	ci left: 2.416689e-07	ci right 3.424712e-06	k: 3	n:2560000
RPAP2   2560000 perm   3410 sec   (751 perm/sec)   p_kst 1.171875e-06   p_cons 1.089797e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 6.991541e-03	ci left: 1.086064e-01	ci right 1.093688e-01	k: 280097	n:2570000
KS ci ratio: 1.959998e+00	ci left: 2.407285e-07	ci right 3.411386e-06	k: 3	n:2570000
RPAP2   2570000 perm   3434 sec   (748 perm/sec)   p_kst 1.167315e-06   p_cons 1.089872e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 6.978241e-03	ci left: 1.085999e-01	ci right 1.093607e-01	k: 281168	n:2580000
KS ci ratio: 1.959998e+00	ci left: 2.397955e-07	ci right 3.398164e-06	k: 3	n:2580000
RPAP2   2580000 perm   3459 sec   (746 perm/sec)   p_kst 1.162791e-06   p_cons 1.089798e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 6.964629e-03	ci left: 1.086041e-01	ci right 1.093635e-01	k: 282267	n:2590000
KS ci ratio: 1.959998e+00	ci left: 2.388696e-07	ci right 3.385044e-06	k: 3	n:2590000
RPAP2   2590000 perm   3484 sec   (743 perm/sec)   p_kst 1.158301e-06   p_cons 1.089834e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 6.951055e-03	ci left: 1.086095e-01	ci right 1.093675e-01	k: 283369	n:2600000
KS ci ratio: 1.959998e+00	ci left: 2.379509e-07	ci right 3.372024e-06	k: 3	n:2600000
RPAP2   2600000 perm   3508 sec   (741 perm/sec)   p_kst 1.153846e-06   p_cons 1.089881e-01   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 6.937506e-03	ci left: 1.086164e-01	ci right 1.093729e-01	k: 284475	n:2610000
KS ci ratio: 1.959998e+00	ci left: 2.370392e-07	ci right 3.359105e-06	k: 3	n:2610000
RPAP2   2610000 perm   3533 sec   (739 perm/sec)   p_kst 1.149425e-06   p_cons 1.089943e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 6.924321e-03	ci left: 1.086153e-01	ci right 1.093703e-01	k: 285560	n:2620000
KS ci ratio: 1.959998e+00	ci left: 2.361345e-07	ci right 3.346284e-06	k: 3	n:2620000
RPAP2   2620000 perm   3558 sec   (736 perm/sec)   p_kst 1.145038e-06   p_cons 1.089924e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 6.911116e-03	ci left: 1.086168e-01	ci right 1.093704e-01	k: 286652	n:2630000
KS ci ratio: 1.959998e+00	ci left: 2.352366e-07	ci right 3.333560e-06	k: 3	n:2630000
RPAP2   2630000 perm   3583 sec   (734 perm/sec)   p_kst 1.140684e-06   p_cons 1.089932e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 6.897233e-03	ci left: 1.086394e-01	ci right 1.093917e-01	k: 287800	n:2640000
KS ci ratio: 1.959998e+00	ci left: 2.343456e-07	ci right 3.320933e-06	k: 3	n:2640000
RPAP2   2640000 perm   3608 sec   (732 perm/sec)   p_kst 1.136364e-06   p_cons 1.090152e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 6.884718e-03	ci left: 1.086258e-01	ci right 1.093766e-01	k: 288852	n:2650000
KS ci ratio: 1.959998e+00	ci left: 2.334612e-07	ci right 3.308401e-06	k: 3	n:2650000
RPAP2   2650000 perm   3633 sec   (729 perm/sec)   p_kst 1.132075e-06   p_cons 1.090008e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 6.871804e-03	ci left: 1.086254e-01	ci right 1.093747e-01	k: 289939	n:2660000
KS ci ratio: 1.959998e+00	ci left: 2.325836e-07	ci right 3.295964e-06	k: 3	n:2660000
RPAP2   2660000 perm   3659 sec   (727 perm/sec)   p_kst 1.127820e-06   p_cons 1.089996e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 6.859241e-03	ci left: 1.086171e-01	ci right 1.093650e-01	k: 291005	n:2670000
KS ci ratio: 1.959998e+00	ci left: 2.317125e-07	ci right 3.283619e-06	k: 3	n:2670000
RPAP2   2670000 perm   3685 sec   (725 perm/sec)   p_kst 1.123596e-06   p_cons 1.089906e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 6.846628e-03	ci left: 1.086122e-01	ci right 1.093588e-01	k: 292080	n:2680000
KS ci ratio: 1.959998e+00	ci left: 2.308479e-07	ci right 3.271367e-06	k: 3	n:2680000
RPAP2   2680000 perm   3710 sec   (722 perm/sec)   p_kst 1.119403e-06   p_cons 1.089851e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 6.834451e-03	ci left: 1.085970e-01	ci right 1.093421e-01	k: 293127	n:2690000
KS ci ratio: 1.959998e+00	ci left: 2.299897e-07	ci right 3.259206e-06	k: 3	n:2690000
RPAP2   2690000 perm   3735 sec   (720 perm/sec)   p_kst 1.115242e-06   p_cons 1.089691e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 6.821441e-03	ci left: 1.086074e-01	ci right 1.093512e-01	k: 294243	n:2700000
KS ci ratio: 1.959998e+00	ci left: 2.291379e-07	ci right 3.247135e-06	k: 3	n:2700000
RPAP2   2700000 perm   3762 sec   (718 perm/sec)   p_kst 1.111111e-06   p_cons 1.089789e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 6.808310e-03	ci left: 1.086233e-01	ci right 1.093657e-01	k: 295374	n:2710000
KS ci ratio: 1.959998e+00	ci left: 2.282924e-07	ci right 3.235153e-06	k: 3	n:2710000
RPAP2   2710000 perm   3787 sec   (716 perm/sec)   p_kst 1.107011e-06   p_cons 1.089941e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 6.795860e-03	ci left: 1.086218e-01	ci right 1.093629e-01	k: 296458	n:2720000
KS ci ratio: 1.959998e+00	ci left: 2.274530e-07	ci right 3.223259e-06	k: 3	n:2720000
RPAP2   2720000 perm   3813 sec   (713 perm/sec)   p_kst 1.102941e-06   p_cons 1.089919e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 6.783567e-03	ci left: 1.086178e-01	ci right 1.093574e-01	k: 297535	n:2730000
KS ci ratio: 1.959998e+00	ci left: 2.266199e-07	ci right 3.211452e-06	k: 3	n:2730000
RPAP2   2730000 perm   3839 sec   (711 perm/sec)   p_kst 1.098901e-06   p_cons 1.089872e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 6.771303e-03	ci left: 1.086148e-01	ci right 1.093531e-01	k: 298615	n:2740000
KS ci ratio: 1.959998e+00	ci left: 2.257928e-07	ci right 3.199731e-06	k: 3	n:2740000
RPAP2   2740000 perm   3865 sec   (709 perm/sec)   p_kst 1.094891e-06   p_cons 1.089836e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 6.758852e-03	ci left: 1.086192e-01	ci right 1.093562e-01	k: 299715	n:2750000
KS ci ratio: 1.959998e+00	ci left: 2.249717e-07	ci right 3.188096e-06	k: 3	n:2750000
RPAP2   2750000 perm   3890 sec   (707 perm/sec)   p_kst 1.090909e-06   p_cons 1.089873e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 6.747161e-03	ci left: 1.086036e-01	ci right 1.093392e-01	k: 300760	n:2760000
KS ci ratio: 1.959998e+00	ci left: 2.241566e-07	ci right 3.176545e-06	k: 3	n:2760000
RPAP2   2760000 perm   3915 sec   (705 perm/sec)   p_kst 1.086957e-06   p_cons 1.089710e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 6.734642e-03	ci left: 1.086138e-01	ci right 1.093481e-01	k: 301876	n:2770000
KS ci ratio: 1.959998e+00	ci left: 2.233474e-07	ci right 3.165077e-06	k: 3	n:2770000
RPAP2   2770000 perm   3941 sec   (703 perm/sec)   p_kst 1.083032e-06   p_cons 1.089805e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 6.722977e-03	ci left: 1.086012e-01	ci right 1.093341e-01	k: 302929	n:2780000
KS ci ratio: 1.959998e+00	ci left: 2.225440e-07	ci right 3.153692e-06	k: 3	n:2780000
RPAP2   2780000 perm   3967 sec   (701 perm/sec)   p_kst 1.079137e-06   p_cons 1.089673e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 6.711248e-03	ci left: 1.085923e-01	ci right 1.093239e-01	k: 303992	n:2790000
KS ci ratio: 1.959998e+00	ci left: 2.217463e-07	ci right 3.142389e-06	k: 3	n:2790000
RPAP2   2790000 perm   3994 sec   (699 perm/sec)   p_kst 1.075269e-06   p_cons 1.089577e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 6.699420e-03	ci left: 1.085881e-01	ci right 1.093184e-01	k: 305068	n:2800000
KS ci ratio: 1.959998e+00	ci left: 2.209544e-07	ci right 3.131166e-06	k: 3	n:2800000
RPAP2   2800000 perm   4020 sec   (697 perm/sec)   p_kst 1.071429e-06   p_cons 1.089529e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 6.687569e-03	ci left: 1.085865e-01	ci right 1.093154e-01	k: 306151	n:2810000
KS ci ratio: 1.959998e+00	ci left: 2.201681e-07	ci right 3.120023e-06	k: 3	n:2810000
RPAP2   2810000 perm   4046 sec   (694 perm/sec)   p_kst 1.067616e-06   p_cons 1.089505e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 6.675707e-03	ci left: 1.085869e-01	ci right 1.093146e-01	k: 307240	n:2820000
KS ci ratio: 1.959998e+00	ci left: 2.193873e-07	ci right 3.108959e-06	k: 3	n:2820000
RPAP2   2820000 perm   4073 sec   (692 perm/sec)   p_kst 1.063830e-06   p_cons 1.089504e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 6.663957e-03	ci left: 1.085860e-01	ci right 1.093123e-01	k: 308325	n:2830000
KS ci ratio: 1.959998e+00	ci left: 2.186121e-07	ci right 3.097973e-06	k: 3	n:2830000
RPAP2   2830000 perm   4099 sec   (690 perm/sec)   p_kst 1.060071e-06   p_cons 1.089488e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 6.652474e-03	ci left: 1.085791e-01	ci right 1.093041e-01	k: 309393	n:2840000
KS ci ratio: 1.959998e+00	ci left: 2.178423e-07	ci right 3.087065e-06	k: 3	n:2840000
RPAP2   2840000 perm   4125 sec   (688 perm/sec)   p_kst 1.056338e-06   p_cons 1.089412e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 6.641734e-03	ci left: 1.085522e-01	ci right 1.092759e-01	k: 310404	n:2850000
KS ci ratio: 1.959998e+00	ci left: 2.170780e-07	ci right 3.076233e-06	k: 3	n:2850000
RPAP2   2850000 perm   4152 sec   (686 perm/sec)   p_kst 1.052632e-06   p_cons 1.089137e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 6.629720e-03	ci left: 1.085643e-01	ci right 1.092868e-01	k: 311526	n:2860000
KS ci ratio: 1.753075e+00	ci left: 3.810719e-07	ci right 3.580971e-06	k: 4	n:2860000
RPAP2   2860000 perm   4179 sec   (684 perm/sec)   p_kst 1.398601e-06   p_cons 1.089252e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 6.617509e-03	ci left: 1.085840e-01	ci right 1.093053e-01	k: 312670	n:2870000
KS ci ratio: 1.753075e+00	ci left: 3.797442e-07	ci right 3.568494e-06	k: 4	n:2870000
RPAP2   2870000 perm   4206 sec   (682 perm/sec)   p_kst 1.393728e-06   p_cons 1.089443e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 6.605791e-03	ci left: 1.085911e-01	ci right 1.093111e-01	k: 313778	n:2880000
KS ci ratio: 1.753075e+00	ci left: 3.784256e-07	ci right 3.556103e-06	k: 4	n:2880000
RPAP2   2880000 perm   4233 sec   (680 perm/sec)   p_kst 1.388889e-06   p_cons 1.089507e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 6.594230e-03	ci left: 1.085953e-01	ci right 1.093141e-01	k: 314878	n:2890000
KS ci ratio: 1.753075e+00	ci left: 3.771162e-07	ci right 3.543798e-06	k: 4	n:2890000
RPAP2   2890000 perm   4260 sec   (678 perm/sec)   p_kst 1.384083e-06   p_cons 1.089543e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 6.583009e-03	ci left: 1.085913e-01	ci right 1.093088e-01	k: 315954	n:2900000
KS ci ratio: 1.753075e+00	ci left: 3.758158e-07	ci right 3.531579e-06	k: 4	n:2900000
RPAP2   2900000 perm   4288 sec   (676 perm/sec)   p_kst 1.379310e-06   p_cons 1.089497e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 6.572101e-03	ci left: 1.085797e-01	ci right 1.092960e-01	k: 317008	n:2910000
KS ci ratio: 1.753075e+00	ci left: 3.745243e-07	ci right 3.519443e-06	k: 4	n:2910000
RPAP2   2910000 perm   4315 sec   (674 perm/sec)   p_kst 1.374570e-06   p_cons 1.089375e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 6.561305e-03	ci left: 1.085665e-01	ci right 1.092815e-01	k: 318057	n:2920000
KS ci ratio: 1.753075e+00	ci left: 3.732417e-07	ci right 3.507390e-06	k: 4	n:2920000
RPAP2   2920000 perm   4342 sec   (672 perm/sec)   p_kst 1.369863e-06   p_cons 1.089236e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 6.550078e-03	ci left: 1.085677e-01	ci right 1.092815e-01	k: 319148	n:2930000
KS ci ratio: 1.753075e+00	ci left: 3.719678e-07	ci right 3.495419e-06	k: 4	n:2930000
RPAP2   2930000 perm   4370 sec   (671 perm/sec)   p_kst 1.365188e-06   p_cons 1.089242e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 6.539104e-03	ci left: 1.085632e-01	ci right 1.092757e-01	k: 320222	n:2940000
KS ci ratio: 1.753076e+00	ci left: 3.707026e-07	ci right 3.483530e-06	k: 4	n:2940000
RPAP2   2940000 perm   4397 sec   (669 perm/sec)   p_kst 1.360544e-06   p_cons 1.089190e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 6.527911e-03	ci left: 1.085667e-01	ci right 1.092781e-01	k: 321320	n:2950000
KS ci ratio: 1.753076e+00	ci left: 3.694460e-07	ci right 3.471721e-06	k: 4	n:2950000
RPAP2   2950000 perm   4425 sec   (667 perm/sec)   p_kst 1.355932e-06   p_cons 1.089220e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 6.516673e-03	ci left: 1.085733e-01	ci right 1.092835e-01	k: 322427	n:2960000
KS ci ratio: 1.753076e+00	ci left: 3.681979e-07	ci right 3.459993e-06	k: 4	n:2960000
RPAP2   2960000 perm   4452 sec   (665 perm/sec)   p_kst 1.351351e-06   p_cons 1.089280e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 6.505843e-03	ci left: 1.085695e-01	ci right 1.092784e-01	k: 323503	n:2970000
KS ci ratio: 1.753076e+00	ci left: 3.669582e-07	ci right 3.448343e-06	k: 4	n:2970000
RPAP2   2970000 perm   4479 sec   (663 perm/sec)   p_kst 1.346801e-06   p_cons 1.089236e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 6.494180e-03	ci left: 1.085921e-01	ci right 1.092999e-01	k: 324658	n:2980000
KS ci ratio: 1.753076e+00	ci left: 3.657268e-07	ci right 3.436771e-06	k: 4	n:2980000
RPAP2   2980000 perm   4507 sec   (661 perm/sec)   p_kst 1.342282e-06   p_cons 1.089456e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 6.483539e-03	ci left: 1.085859e-01	ci right 1.092925e-01	k: 325727	n:2990000
KS ci ratio: 1.753076e+00	ci left: 3.645036e-07	ci right 3.425277e-06	k: 4	n:2990000
RPAP2   2990000 perm   4534 sec   (659 perm/sec)   p_kst 1.337793e-06   p_cons 1.089388e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 6.472896e-03	ci left: 1.085813e-01	ci right 1.092868e-01	k: 326801	n:3000000
KS ci ratio: 1.753076e+00	ci left: 3.632886e-07	ci right 3.413859e-06	k: 4	n:3000000
RPAP2   3000000 perm   4562 sec   (658 perm/sec)   p_kst 1.333333e-06   p_cons 1.089337e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 6.462437e-03	ci left: 1.085728e-01	ci right 1.092771e-01	k: 327863	n:3010000
KS ci ratio: 1.753076e+00	ci left: 3.620816e-07	ci right 3.402518e-06	k: 4	n:3010000
RPAP2   3010000 perm   4590 sec   (656 perm/sec)   p_kst 1.328904e-06   p_cons 1.089246e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 6.451841e-03	ci left: 1.085700e-01	ci right 1.092731e-01	k: 328942	n:3020000
KS ci ratio: 1.753076e+00	ci left: 3.608827e-07	ci right 3.391251e-06	k: 4	n:3020000
RPAP2   3020000 perm   4618 sec   (654 perm/sec)   p_kst 1.324503e-06   p_cons 1.089212e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 6.441484e-03	ci left: 1.085616e-01	ci right 1.092635e-01	k: 330004	n:3030000
KS ci ratio: 1.753076e+00	ci left: 3.596917e-07	ci right 3.380059e-06	k: 4	n:3030000
RPAP2   3030000 perm   4646 sec   (652 perm/sec)   p_kst 1.320132e-06   p_cons 1.089122e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 6.430817e-03	ci left: 1.085642e-01	ci right 1.092649e-01	k: 331099	n:3040000
KS ci ratio: 1.753076e+00	ci left: 3.585085e-07	ci right 3.368940e-06	k: 4	n:3040000
RPAP2   3040000 perm   4675 sec   (650 perm/sec)   p_kst 1.315789e-06   p_cons 1.089141e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 6.420310e-03	ci left: 1.085634e-01	ci right 1.092629e-01	k: 332184	n:3050000
KS ci ratio: 1.753076e+00	ci left: 3.573330e-07	ci right 3.357894e-06	k: 4	n:3050000
RPAP2   3050000 perm   4703 sec   (649 perm/sec)   p_kst 1.311475e-06   p_cons 1.089128e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 6.409543e-03	ci left: 1.085721e-01	ci right 1.092705e-01	k: 333298	n:3060000
KS ci ratio: 1.753076e+00	ci left: 3.561653e-07	ci right 3.346921e-06	k: 4	n:3060000
RPAP2   3060000 perm   4731 sec   (647 perm/sec)   p_kst 1.307190e-06   p_cons 1.089209e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 6.399484e-03	ci left: 1.085609e-01	ci right 1.092581e-01	k: 334351	n:3070000
KS ci ratio: 1.753076e+00	ci left: 3.550051e-07	ci right 3.336019e-06	k: 4	n:3070000
RPAP2   3070000 perm   4760 sec   (645 perm/sec)   p_kst 1.302932e-06   p_cons 1.089091e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 6.389067e-03	ci left: 1.085620e-01	ci right 1.092582e-01	k: 335442	n:3080000
KS ci ratio: 1.753076e+00	ci left: 3.538525e-07	ci right 3.325188e-06	k: 4	n:3080000
RPAP2   3080000 perm   4788 sec   (643 perm/sec)   p_kst 1.298701e-06   p_cons 1.089097e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 6.379061e-03	ci left: 1.085522e-01	ci right 1.092472e-01	k: 336499	n:3090000
KS ci ratio: 1.753076e+00	ci left: 3.527073e-07	ci right 3.314427e-06	k: 4	n:3090000
RPAP2   3090000 perm   4816 sec   (642 perm/sec)   p_kst 1.294498e-06   p_cons 1.088994e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 6.620443e-03	ci left: 1.012661e-01	ci right 1.019391e-01	k: 314967	n:3100000
KS ci ratio: 1.753076e+00	ci left: 3.515696e-07	ci right 3.303735e-06	k: 4	n:3100000
RPAP2   3100000 perm   4845 sec   (640 perm/sec)   p_kst 1.290323e-06   p_cons 1.016023e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 6.609744e-03	ci left: 1.012680e-01	ci right 1.019398e-01	k: 315987	n:3110000
KS ci ratio: 1.753076e+00	ci left: 3.504391e-07	ci right 3.293112e-06	k: 4	n:3110000
RPAP2   3110000 perm   4873 sec   (638 perm/sec)   p_kst 1.286174e-06   p_cons 1.016035e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 6.599306e-03	ci left: 1.012640e-01	ci right 1.019348e-01	k: 316989	n:3120000
KS ci ratio: 1.753076e+00	ci left: 3.493159e-07	ci right 3.282557e-06	k: 4	n:3120000
RPAP2   3120000 perm   4902 sec   (636 perm/sec)   p_kst 1.282051e-06   p_cons 1.015990e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 6.588121e-03	ci left: 1.012821e-01	ci right 1.019519e-01	k: 318060	n:3130000
KS ci ratio: 1.753076e+00	ci left: 3.481999e-07	ci right 3.272070e-06	k: 4	n:3130000
RPAP2   3130000 perm   4932 sec   (635 perm/sec)   p_kst 1.277955e-06   p_cons 1.016166e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 6.577819e-03	ci left: 1.012772e-01	ci right 1.019459e-01	k: 319059	n:3140000
KS ci ratio: 1.753076e+00	ci left: 3.470910e-07	ci right 3.261649e-06	k: 4	n:3140000
RPAP2   3140000 perm   4961 sec   (633 perm/sec)   p_kst 1.273885e-06   p_cons 1.016111e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 6.566949e-03	ci left: 1.012894e-01	ci right 1.019571e-01	k: 320112	n:3150000
KS ci ratio: 1.753076e+00	ci left: 3.459891e-07	ci right 3.251295e-06	k: 4	n:3150000
RPAP2   3150000 perm   4990 sec   (631 perm/sec)   p_kst 1.269841e-06   p_cons 1.016229e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 6.557166e-03	ci left: 1.012728e-01	ci right 1.019393e-01	k: 321074	n:3160000
KS ci ratio: 1.753076e+00	ci left: 3.448942e-07	ci right 3.241006e-06	k: 4	n:3160000
RPAP2   3160000 perm   5020 sec   (630 perm/sec)   p_kst 1.265823e-06   p_cons 1.016057e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 6.546782e-03	ci left: 1.012742e-01	ci right 1.019397e-01	k: 322093	n:3170000
KS ci ratio: 1.753076e+00	ci left: 3.438062e-07	ci right 3.230782e-06	k: 4	n:3170000
RPAP2   3170000 perm   5050 sec   (628 perm/sec)   p_kst 1.261830e-06   p_cons 1.016066e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 6.536290e-03	ci left: 1.012801e-01	ci right 1.019445e-01	k: 323126	n:3180000
KS ci ratio: 1.753076e+00	ci left: 3.427251e-07	ci right 3.220622e-06	k: 4	n:3180000
RPAP2   3180000 perm   5079 sec   (626 perm/sec)   p_kst 1.257862e-06   p_cons 1.016119e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 6.526374e-03	ci left: 1.012712e-01	ci right 1.019346e-01	k: 324112	n:3190000
KS ci ratio: 1.753076e+00	ci left: 3.416507e-07	ci right 3.210526e-06	k: 4	n:3190000
RPAP2   3190000 perm   5109 sec   (624 perm/sec)   p_kst 1.253918e-06   p_cons 1.016025e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 6.515634e-03	ci left: 1.012867e-01	ci right 1.019491e-01	k: 325176	n:3200000
KS ci ratio: 1.753076e+00	ci left: 3.405830e-07	ci right 3.200493e-06	k: 4	n:3200000
RPAP2   3200000 perm   5138 sec   (623 perm/sec)   p_kst 1.250000e-06   p_cons 1.016175e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 6.505590e-03	ci left: 1.012840e-01	ci right 1.019454e-01	k: 326182	n:3210000
KS ci ratio: 1.753076e+00	ci left: 3.395220e-07	ci right 3.190523e-06	k: 4	n:3210000
RPAP2   3210000 perm   5168 sec   (621 perm/sec)   p_kst 1.246106e-06   p_cons 1.016143e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 6.495957e-03	ci left: 1.012711e-01	ci right 1.019314e-01	k: 327155	n:3220000
KS ci ratio: 1.753076e+00	ci left: 3.384676e-07	ci right 3.180615e-06	k: 4	n:3220000
RPAP2   3220000 perm   5198 sec   (619 perm/sec)   p_kst 1.242236e-06   p_cons 1.016009e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 6.486378e-03	ci left: 1.012580e-01	ci right 1.019173e-01	k: 328127	n:3230000
KS ci ratio: 1.753076e+00	ci left: 3.374197e-07	ci right 3.170767e-06	k: 4	n:3230000
RPAP2   3230000 perm   5228 sec   (618 perm/sec)   p_kst 1.238390e-06   p_cons 1.015873e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 6.476063e-03	ci left: 1.012669e-01	ci right 1.019252e-01	k: 329170	n:3240000
KS ci ratio: 1.753076e+00	ci left: 3.363783e-07	ci right 3.160981e-06	k: 4	n:3240000
RPAP2   3240000 perm   5258 sec   (616 perm/sec)   p_kst 1.234568e-06   p_cons 1.015957e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 6.466462e-03	ci left: 1.012570e-01	ci right 1.019142e-01	k: 330152	n:3250000
KS ci ratio: 1.753076e+00	ci left: 3.353433e-07	ci right 3.151255e-06	k: 4	n:3250000
RPAP2   3250000 perm   5288 sec   (615 perm/sec)   p_kst 1.230769e-06   p_cons 1.015852e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 6.456980e-03	ci left: 1.012450e-01	ci right 1.019011e-01	k: 331127	n:3260000
KS ci ratio: 1.753076e+00	ci left: 3.343146e-07	ci right 3.141589e-06	k: 4	n:3260000
RPAP2   3260000 perm   5318 sec   (613 perm/sec)   p_kst 1.226994e-06   p_cons 1.015727e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 6.446362e-03	ci left: 1.012663e-01	ci right 1.019215e-01	k: 332211	n:3270000
KS ci ratio: 1.753076e+00	ci left: 3.332923e-07	ci right 3.131981e-06	k: 4	n:3270000
RPAP2   3270000 perm   5348 sec   (611 perm/sec)   p_kst 1.223242e-06   p_cons 1.015936e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 6.436570e-03	ci left: 1.012656e-01	ci right 1.019198e-01	k: 333223	n:3280000
KS ci ratio: 1.753076e+00	ci left: 3.322761e-07	ci right 3.122433e-06	k: 4	n:3280000
RPAP2   3280000 perm   5378 sec   (610 perm/sec)   p_kst 1.219512e-06   p_cons 1.015924e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 6.426395e-03	ci left: 1.012771e-01	ci right 1.019303e-01	k: 334275	n:3290000
KS ci ratio: 1.753076e+00	ci left: 3.312662e-07	ci right 3.112942e-06	k: 4	n:3290000
RPAP2   3290000 perm   5409 sec   (608 perm/sec)   p_kst 1.215805e-06   p_cons 1.016033e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 6.416789e-03	ci left: 1.012736e-01	ci right 1.019259e-01	k: 335278	n:3300000
KS ci ratio: 1.753076e+00	ci left: 3.302623e-07	ci right 3.103509e-06	k: 4	n:3300000
RPAP2   3300000 perm   5440 sec   (607 perm/sec)   p_kst 1.212121e-06   p_cons 1.015994e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 6.407354e-03	ci left: 1.012666e-01	ci right 1.019178e-01	k: 336269	n:3310000
KS ci ratio: 1.753076e+00	ci left: 3.292646e-07	ci right 3.094133e-06	k: 4	n:3310000
RPAP2   3310000 perm   5471 sec   (605 perm/sec)   p_kst 1.208459e-06   p_cons 1.015918e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 6.397211e-03	ci left: 1.012809e-01	ci right 1.019312e-01	k: 337331	n:3320000
KS ci ratio: 1.753076e+00	ci left: 3.282728e-07	ci right 3.084813e-06	k: 4	n:3320000
RPAP2   3320000 perm   5502 sec   (603 perm/sec)   p_kst 1.204819e-06   p_cons 1.016057e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 6.387798e-03	ci left: 1.012757e-01	ci right 1.019250e-01	k: 338328	n:3330000
KS ci ratio: 1.753076e+00	ci left: 3.272870e-07	ci right 3.075549e-06	k: 4	n:3330000
RPAP2   3330000 perm   5533 sec   (602 perm/sec)   p_kst 1.201201e-06   p_cons 1.016000e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 6.136239e-03	ci left: 1.085479e-01	ci right 1.092163e-01	k: 363665	n:3340000
KS ci ratio: 1.753076e+00	ci left: 3.263071e-07	ci right 3.066341e-06	k: 4	n:3340000
RPAP2   3340000 perm   5564 sec   (600 perm/sec)   p_kst 1.197605e-06   p_cons 1.088817e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 6.127176e-03	ci left: 1.085451e-01	ci right 1.092125e-01	k: 364743	n:3350000
KS ci ratio: 1.753076e+00	ci left: 3.253330e-07	ci right 3.057188e-06	k: 4	n:3350000
RPAP2   3350000 perm   5595 sec   (599 perm/sec)   p_kst 1.194030e-06   p_cons 1.088785e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 6.117965e-03	ci left: 1.085484e-01	ci right 1.092148e-01	k: 365841	n:3360000
KS ci ratio: 1.753076e+00	ci left: 3.243648e-07	ci right 3.048089e-06	k: 4	n:3360000
RPAP2   3360000 perm   5626 sec   (597 perm/sec)   p_kst 1.190476e-06   p_cons 1.088812e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 6.108767e-03	ci left: 1.085525e-01	ci right 1.092179e-01	k: 366942	n:3370000
KS ci ratio: 1.753076e+00	ci left: 3.234023e-07	ci right 3.039044e-06	k: 4	n:3370000
RPAP2   3370000 perm   5657 sec   (596 perm/sec)   p_kst 1.186944e-06   p_cons 1.088849e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 6.099797e-03	ci left: 1.085507e-01	ci right 1.092151e-01	k: 368023	n:3380000
KS ci ratio: 1.753076e+00	ci left: 3.224455e-07	ci right 3.030053e-06	k: 4	n:3380000
RPAP2   3380000 perm   5689 sec   (594 perm/sec)   p_kst 1.183432e-06   p_cons 1.088825e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 6.091190e-03	ci left: 1.085385e-01	ci right 1.092020e-01	k: 369069	n:3390000
KS ci ratio: 1.753076e+00	ci left: 3.214943e-07	ci right 3.021115e-06	k: 4	n:3390000
RPAP2   3390000 perm   5720 sec   (593 perm/sec)   p_kst 1.179941e-06   p_cons 1.088699e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 6.082232e-03	ci left: 1.085388e-01	ci right 1.092013e-01	k: 370157	n:3400000
KS ci ratio: 1.753076e+00	ci left: 3.205487e-07	ci right 3.012229e-06	k: 4	n:3400000
RPAP2   3400000 perm   5752 sec   (591 perm/sec)   p_kst 1.176471e-06   p_cons 1.088697e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 6.073158e-03	ci left: 1.085441e-01	ci right 1.092056e-01	k: 371262	n:3410000
KS ci ratio: 1.753076e+00	ci left: 3.196087e-07	ci right 3.003396e-06	k: 4	n:3410000
RPAP2   3410000 perm   5783 sec   (590 perm/sec)   p_kst 1.173021e-06   p_cons 1.088745e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 6.064361e-03	ci left: 1.085417e-01	ci right 1.092022e-01	k: 372341	n:3420000
KS ci ratio: 1.753076e+00	ci left: 3.186742e-07	ci right 2.994614e-06	k: 4	n:3420000
RPAP2   3420000 perm   5816 sec   (588 perm/sec)   p_kst 1.169591e-06   p_cons 1.088716e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 6.055594e-03	ci left: 1.085397e-01	ci right 1.091992e-01	k: 373421	n:3430000
KS ci ratio: 1.753076e+00	ci left: 3.177451e-07	ci right 2.985883e-06	k: 4	n:3430000
RPAP2   3430000 perm   5847 sec   (587 perm/sec)   p_kst 1.166181e-06   p_cons 1.088691e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 6.046783e-03	ci left: 1.085402e-01	ci right 1.091988e-01	k: 374510	n:3440000
KS ci ratio: 1.753076e+00	ci left: 3.168214e-07	ci right 2.977203e-06	k: 4	n:3440000
RPAP2   3440000 perm   5879 sec   (585 perm/sec)   p_kst 1.162791e-06   p_cons 1.088692e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 6.038128e-03	ci left: 1.085370e-01	ci right 1.091946e-01	k: 375586	n:3450000
KS ci ratio: 1.753076e+00	ci left: 3.159031e-07	ci right 2.968574e-06	k: 4	n:3450000
RPAP2   3450000 perm   5911 sec   (584 perm/sec)   p_kst 1.159420e-06   p_cons 1.088655e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 6.029501e-03	ci left: 1.085341e-01	ci right 1.091908e-01	k: 376663	n:3460000
KS ci ratio: 1.753076e+00	ci left: 3.149901e-07	ci right 2.959994e-06	k: 4	n:3460000
RPAP2   3460000 perm   5942 sec   (582 perm/sec)   p_kst 1.156069e-06   p_cons 1.088621e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 6.021018e-03	ci left: 1.085278e-01	ci right 1.091835e-01	k: 377728	n:3470000
KS ci ratio: 1.753076e+00	ci left: 3.140823e-07	ci right 2.951464e-06	k: 4	n:3470000
RPAP2   3470000 perm   5974 sec   (581 perm/sec)   p_kst 1.152738e-06   p_cons 1.088553e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 6.011876e-03	ci left: 1.085439e-01	ci right 1.091987e-01	k: 378871	n:3480000
KS ci ratio: 1.753076e+00	ci left: 3.131798e-07	ci right 2.942983e-06	k: 4	n:3480000
RPAP2   3480000 perm   6006 sec   (579 perm/sec)   p_kst 1.149425e-06   p_cons 1.088710e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 6.003183e-03	ci left: 1.085467e-01	ci right 1.092006e-01	k: 379968	n:3490000
KS ci ratio: 1.753076e+00	ci left: 3.122824e-07	ci right 2.934550e-06	k: 4	n:3490000
RPAP2   3490000 perm   6038 sec   (578 perm/sec)   p_kst 1.146132e-06   p_cons 1.088734e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 5.994360e-03	ci left: 1.085550e-01	ci right 1.092079e-01	k: 381084	n:3500000
KS ci ratio: 1.753076e+00	ci left: 3.113902e-07	ci right 2.926166e-06	k: 4	n:3500000
RPAP2   3500000 perm   6070 sec   (577 perm/sec)   p_kst 1.142857e-06   p_cons 1.088811e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 5.985858e-03	ci left: 1.085541e-01	ci right 1.092061e-01	k: 382168	n:3510000
KS ci ratio: 1.753076e+00	ci left: 3.105030e-07	ci right 2.917829e-06	k: 4	n:3510000
RPAP2   3510000 perm   6103 sec   (575 perm/sec)   p_kst 1.139601e-06   p_cons 1.088798e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 5.977662e-03	ci left: 1.085444e-01	ci right 1.091955e-01	k: 383221	n:3520000
KS ci ratio: 1.753076e+00	ci left: 3.096209e-07	ci right 2.909540e-06	k: 4	n:3520000
RPAP2   3520000 perm   6136 sec   (574 perm/sec)   p_kst 1.136364e-06   p_cons 1.088696e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 5.969030e-03	ci left: 1.085500e-01	ci right 1.092002e-01	k: 384328	n:3530000
KS ci ratio: 1.753076e+00	ci left: 3.087438e-07	ci right 2.901297e-06	k: 4	n:3530000
RPAP2   3530000 perm   6169 sec   (572 perm/sec)   p_kst 1.133144e-06   p_cons 1.088748e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 5.960730e-03	ci left: 1.085460e-01	ci right 1.091953e-01	k: 385401	n:3540000
KS ci ratio: 1.753076e+00	ci left: 3.078717e-07	ci right 2.893102e-06	k: 4	n:3540000
RPAP2   3540000 perm   6202 sec   (571 perm/sec)   p_kst 1.129944e-06   p_cons 1.088703e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 5.952136e-03	ci left: 1.085528e-01	ci right 1.092011e-01	k: 386512	n:3550000
KS ci ratio: 1.753076e+00	ci left: 3.070044e-07	ci right 2.884952e-06	k: 4	n:3550000
RPAP2   3550000 perm   6234 sec   (569 perm/sec)   p_kst 1.126761e-06   p_cons 1.088766e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 5.943639e-03	ci left: 1.085575e-01	ci right 1.092049e-01	k: 387616	n:3560000
KS ci ratio: 1.753076e+00	ci left: 3.061420e-07	ci right 2.876848e-06	k: 4	n:3560000
RPAP2   3560000 perm   6267 sec   (568 perm/sec)   p_kst 1.123596e-06   p_cons 1.088809e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 5.935161e-03	ci left: 1.085628e-01	ci right 1.092093e-01	k: 388722	n:3570000
KS ci ratio: 1.753076e+00	ci left: 3.052845e-07	ci right 2.868790e-06	k: 4	n:3570000
RPAP2   3570000 perm   6299 sec   (567 perm/sec)   p_kst 1.120448e-06   p_cons 1.088857e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 5.927036e-03	ci left: 1.085577e-01	ci right 1.092033e-01	k: 389791	n:3580000
KS ci ratio: 1.753076e+00	ci left: 3.044317e-07	ci right 2.860776e-06	k: 4	n:3580000
RPAP2   3580000 perm   6332 sec   (565 perm/sec)   p_kst 1.117318e-06   p_cons 1.088802e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 5.918408e-03	ci left: 1.085701e-01	ci right 1.092149e-01	k: 390923	n:3590000
KS ci ratio: 1.753076e+00	ci left: 3.035838e-07	ci right 2.852808e-06	k: 4	n:3590000
RPAP2   3590000 perm   6366 sec   (564 perm/sec)   p_kst 1.114206e-06   p_cons 1.088922e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 5.909979e-03	ci left: 1.085773e-01	ci right 1.092211e-01	k: 392036	n:3600000
KS ci ratio: 1.753076e+00	ci left: 3.027405e-07	ci right 2.844883e-06	k: 4	n:3600000
RPAP2   3600000 perm   6399 sec   (563 perm/sec)   p_kst 1.111111e-06   p_cons 1.088989e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 5.901619e-03	ci left: 1.085833e-01	ci right 1.092262e-01	k: 393145	n:3610000
KS ci ratio: 1.753076e+00	ci left: 3.019018e-07	ci right 2.837003e-06	k: 4	n:3610000
RPAP2   3610000 perm   6433 sec   (561 perm/sec)   p_kst 1.108033e-06   p_cons 1.089044e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 5.893664e-03	ci left: 1.085771e-01	ci right 1.092191e-01	k: 394210	n:3620000
KS ci ratio: 1.753076e+00	ci left: 3.010679e-07	ci right 2.829166e-06	k: 4	n:3620000
RPAP2   3620000 perm   6466 sec   (560 perm/sec)   p_kst 1.104972e-06   p_cons 1.088978e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 5.885548e-03	ci left: 1.085772e-01	ci right 1.092184e-01	k: 395298	n:3630000
KS ci ratio: 1.753076e+00	ci left: 3.002385e-07	ci right 2.821372e-06	k: 4	n:3630000
RPAP2   3630000 perm   6500 sec   (558 perm/sec)   p_kst 1.101928e-06   p_cons 1.088975e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 5.877599e-03	ci left: 1.085730e-01	ci right 1.092133e-01	k: 396370	n:3640000
KS ci ratio: 1.753076e+00	ci left: 2.994136e-07	ci right 2.813621e-06	k: 4	n:3640000
RPAP2   3640000 perm   6533 sec   (557 perm/sec)   p_kst 1.098901e-06   p_cons 1.088929e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 5.869782e-03	ci left: 1.085655e-01	ci right 1.092049e-01	k: 397430	n:3650000
KS ci ratio: 1.753076e+00	ci left: 2.985933e-07	ci right 2.805912e-06	k: 4	n:3650000
RPAP2   3650000 perm   6567 sec   (556 perm/sec)   p_kst 1.095890e-06   p_cons 1.088849e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 5.861575e-03	ci left: 1.085720e-01	ci right 1.092106e-01	k: 398541	n:3660000
KS ci ratio: 1.753076e+00	ci left: 2.977775e-07	ci right 2.798246e-06	k: 4	n:3660000
RPAP2   3660000 perm   6600 sec   (555 perm/sec)   p_kst 1.092896e-06   p_cons 1.088910e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 5.853509e-03	ci left: 1.085749e-01	ci right 1.092126e-01	k: 399639	n:3670000
KS ci ratio: 1.753076e+00	ci left: 2.969661e-07	ci right 2.790621e-06	k: 4	n:3670000
RPAP2   3670000 perm   6634 sec   (553 perm/sec)   p_kst 1.089918e-06   p_cons 1.088935e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 5.845362e-03	ci left: 1.085816e-01	ci right 1.092184e-01	k: 400751	n:3680000
KS ci ratio: 1.753076e+00	ci left: 2.961591e-07	ci right 2.783038e-06	k: 4	n:3680000
RPAP2   3680000 perm   6667 sec   (552 perm/sec)   p_kst 1.086957e-06   p_cons 1.088997e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 5.837338e-03	ci left: 1.085853e-01	ci right 1.092213e-01	k: 401852	n:3690000
KS ci ratio: 1.753076e+00	ci left: 2.953565e-07	ci right 2.775496e-06	k: 4	n:3690000
RPAP2   3690000 perm   6701 sec   (551 perm/sec)   p_kst 1.084011e-06   p_cons 1.089030e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 5.829656e-03	ci left: 1.085787e-01	ci right 1.092138e-01	k: 402915	n:3700000
KS ci ratio: 1.753076e+00	ci left: 2.945583e-07	ci right 2.767995e-06	k: 4	n:3700000
RPAP2   3700000 perm   6735 sec   (549 perm/sec)   p_kst 1.081081e-06   p_cons 1.088959e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 5.821834e-03	ci left: 1.085778e-01	ci right 1.092120e-01	k: 403999	n:3710000
KS ci ratio: 1.753076e+00	ci left: 2.937643e-07	ci right 2.760534e-06	k: 4	n:3710000
RPAP2   3710000 perm   6769 sec   (548 perm/sec)   p_kst 1.078167e-06   p_cons 1.088946e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 5.813665e-03	ci left: 1.085895e-01	ci right 1.092229e-01	k: 405130	n:3720000
KS ci ratio: 1.753076e+00	ci left: 2.929746e-07	ci right 2.753113e-06	k: 4	n:3720000
RPAP2   3720000 perm   6804 sec   (547 perm/sec)   p_kst 1.075269e-06   p_cons 1.089059e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 5.805875e-03	ci left: 1.085897e-01	ci right 1.092222e-01	k: 406218	n:3730000
KS ci ratio: 1.753076e+00	ci left: 2.921892e-07	ci right 2.745732e-06	k: 4	n:3730000
RPAP2   3730000 perm   6838 sec   (545 perm/sec)   p_kst 1.072386e-06   p_cons 1.089056e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 5.798252e-03	ci left: 1.085853e-01	ci right 1.092170e-01	k: 407289	n:3740000
KS ci ratio: 1.753076e+00	ci left: 2.914079e-07	ci right 2.738390e-06	k: 4	n:3740000
RPAP2   3740000 perm   6873 sec   (544 perm/sec)   p_kst 1.069519e-06   p_cons 1.089008e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 5.790747e-03	ci left: 1.085780e-01	ci right 1.092088e-01	k: 408349	n:3750000
KS ci ratio: 1.753076e+00	ci left: 2.906308e-07	ci right 2.731088e-06	k: 4	n:3750000
RPAP2   3750000 perm   6907 sec   (543 perm/sec)   p_kst 1.066667e-06   p_cons 1.088931e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 5.783057e-03	ci left: 1.085779e-01	ci right 1.092078e-01	k: 409436	n:3760000
KS ci ratio: 1.753076e+00	ci left: 2.898579e-07	ci right 2.723825e-06	k: 4	n:3760000
RPAP2   3760000 perm   6943 sec   (542 perm/sec)   p_kst 1.063830e-06   p_cons 1.088926e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 5.775492e-03	ci left: 1.085746e-01	ci right 1.092037e-01	k: 410511	n:3770000
KS ci ratio: 1.753076e+00	ci left: 2.890890e-07	ci right 2.716600e-06	k: 4	n:3770000
RPAP2   3770000 perm   6977 sec   (540 perm/sec)   p_kst 1.061008e-06   p_cons 1.088889e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 5.767783e-03	ci left: 1.085771e-01	ci right 1.092055e-01	k: 411608	n:3780000
KS ci ratio: 1.753076e+00	ci left: 2.883242e-07	ci right 2.709413e-06	k: 4	n:3780000
RPAP2   3780000 perm   7012 sec   (539 perm/sec)   p_kst 1.058201e-06   p_cons 1.088910e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 5.760403e-03	ci left: 1.085697e-01	ci right 1.091971e-01	k: 412667	n:3790000
KS ci ratio: 1.753076e+00	ci left: 2.875635e-07	ci right 2.702264e-06	k: 4	n:3790000
RPAP2   3790000 perm   7047 sec   (538 perm/sec)   p_kst 1.055409e-06   p_cons 1.088831e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 5.752880e-03	ci left: 1.085680e-01	ci right 1.091947e-01	k: 413748	n:3800000
KS ci ratio: 1.753076e+00	ci left: 2.868068e-07	ci right 2.695153e-06	k: 4	n:3800000
RPAP2   3800000 perm   7081 sec   (537 perm/sec)   p_kst 1.052632e-06   p_cons 1.088811e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 5.745557e-03	ci left: 1.085606e-01	ci right 1.091864e-01	k: 414807	n:3810000
KS ci ratio: 1.753076e+00	ci left: 2.860540e-07	ci right 2.688079e-06	k: 4	n:3810000
RPAP2   3810000 perm   7116 sec   (535 perm/sec)   p_kst 1.049869e-06   p_cons 1.088732e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 5.737774e-03	ci left: 1.085697e-01	ci right 1.091947e-01	k: 415929	n:3820000
KS ci ratio: 1.753076e+00	ci left: 2.853051e-07	ci right 2.681042e-06	k: 4	n:3820000
RPAP2   3820000 perm   7151 sec   (534 perm/sec)   p_kst 1.047120e-06   p_cons 1.088819e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 5.730362e-03	ci left: 1.085673e-01	ci right 1.091915e-01	k: 417007	n:3830000
KS ci ratio: 1.753076e+00	ci left: 2.845602e-07	ci right 2.674042e-06	k: 4	n:3830000
RPAP2   3830000 perm   7186 sec   (533 perm/sec)   p_kst 1.044386e-06   p_cons 1.088791e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 5.722649e-03	ci left: 1.085761e-01	ci right 1.091995e-01	k: 418128	n:3840000
KS ci ratio: 1.753076e+00	ci left: 2.838192e-07	ci right 2.667078e-06	k: 4	n:3840000
RPAP2   3840000 perm   7221 sec   (532 perm/sec)   p_kst 1.041667e-06   p_cons 1.088875e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 5.714943e-03	ci left: 1.085856e-01	ci right 1.092082e-01	k: 419252	n:3850000
KS ci ratio: 1.753076e+00	ci left: 2.830820e-07	ci right 2.660151e-06	k: 4	n:3850000
RPAP2   3850000 perm   7256 sec   (531 perm/sec)   p_kst 1.038961e-06   p_cons 1.088966e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 5.707375e-03	ci left: 1.085915e-01	ci right 1.092133e-01	k: 420362	n:3860000
KS ci ratio: 1.753076e+00	ci left: 2.823486e-07	ci right 2.653259e-06	k: 4	n:3860000
RPAP2   3860000 perm   7291 sec   (529 perm/sec)   p_kst 1.036269e-06   p_cons 1.089021e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 5.699815e-03	ci left: 1.085981e-01	ci right 1.092191e-01	k: 421475	n:3870000
KS ci ratio: 1.753076e+00	ci left: 2.816190e-07	ci right 2.646403e-06	k: 4	n:3870000
RPAP2   3870000 perm   7327 sec   (528 perm/sec)   p_kst 1.033592e-06   p_cons 1.089083e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 5.692095e-03	ci left: 1.086111e-01	ci right 1.092313e-01	k: 422613	n:3880000
KS ci ratio: 1.753076e+00	ci left: 2.808932e-07	ci right 2.639583e-06	k: 4	n:3880000
RPAP2   3880000 perm   7363 sec   (527 perm/sec)   p_kst 1.030928e-06   p_cons 1.089209e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 5.684655e-03	ci left: 1.086155e-01	ci right 1.092350e-01	k: 423718	n:3890000
KS ci ratio: 1.753076e+00	ci left: 2.801711e-07	ci right 2.632797e-06	k: 4	n:3890000
RPAP2   3890000 perm   7398 sec   (526 perm/sec)   p_kst 1.028278e-06   p_cons 1.089249e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 5.677185e-03	ci left: 1.086220e-01	ci right 1.092406e-01	k: 424831	n:3900000
KS ci ratio: 1.753076e+00	ci left: 2.794527e-07	ci right 2.626046e-06	k: 4	n:3900000
RPAP2   3900000 perm   7434 sec   (525 perm/sec)   p_kst 1.025641e-06   p_cons 1.089310e-01   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 5.669683e-03	ci left: 1.086305e-01	ci right 1.092484e-01	k: 425952	n:3910000
KS ci ratio: 1.753076e+00	ci left: 2.787380e-07	ci right 2.619330e-06	k: 4	n:3910000
RPAP2   3910000 perm   7471 sec   (523 perm/sec)   p_kst 1.023018e-06   p_cons 1.089391e-01   p_joint 0

Joint ci ratio: 9.239506e-01	ci left: 2.526310e-06	ci right 6.943523e-06	k: 17	n:3920000
Cons ci ratio: 5.662450e-03	ci left: 1.086308e-01	ci right 1.092479e-01	k: 427041	n:3920000
KS ci ratio: 1.600332e+00	ci left: 4.141548e-07	ci right 2.976613e-06	k: 5	n:3920000
RPAP2   3920000 perm   7507 sec   (522 perm/sec)   p_kst 1.275510e-06   p_cons 1.089390e-01   p_joint 4.336735e-06

Joint ci ratio: 9.239506e-01	ci left: 2.519881e-06	ci right 6.925855e-06	k: 17	n:3930000
Cons ci ratio: 5.655022e-03	ci left: 1.086387e-01	ci right 1.092550e-01	k: 428160	n:3930000
KS ci ratio: 1.600332e+00	ci left: 4.131010e-07	ci right 2.969039e-06	k: 5	n:3930000
RPAP2   3930000 perm   7543 sec   (521 perm/sec)   p_kst 1.272265e-06   p_cons 1.089466e-01   p_joint 4.325700e-06

Joint ci ratio: 9.239506e-01	ci left: 2.513486e-06	ci right 6.908277e-06	k: 17	n:3940000
Cons ci ratio: 5.647734e-03	ci left: 1.086428e-01	ci right 1.092583e-01	k: 429264	n:3940000
KS ci ratio: 1.600332e+00	ci left: 4.120525e-07	ci right 2.961503e-06	k: 5	n:3940000
RPAP2   3940000 perm   7579 sec   (520 perm/sec)   p_kst 1.269036e-06   p_cons 1.089503e-01   p_joint 4.314721e-06

Joint ci ratio: 9.239506e-01	ci left: 2.507123e-06	ci right 6.890788e-06	k: 17	n:3950000
Cons ci ratio: 5.640694e-03	ci left: 1.086392e-01	ci right 1.092540e-01	k: 430338	n:3950000
KS ci ratio: 1.600332e+00	ci left: 4.110093e-07	ci right 2.954006e-06	k: 5	n:3950000
RPAP2   3950000 perm   7615 sec   (519 perm/sec)   p_kst 1.265823e-06   p_cons 1.089463e-01   p_joint 4.303797e-06

Joint ci ratio: 9.239506e-01	ci left: 2.500791e-06	ci right 6.873387e-06	k: 17	n:3960000
Cons ci ratio: 5.633490e-03	ci left: 1.086423e-01	ci right 1.092563e-01	k: 431438	n:3960000
KS ci ratio: 1.600332e+00	ci left: 4.099714e-07	ci right 2.946546e-06	k: 5	n:3960000
RPAP2   3960000 perm   7652 sec   (518 perm/sec)   p_kst 1.262626e-06   p_cons 1.089490e-01   p_joint 4.292929e-06

Joint ci ratio: 9.239506e-01	ci left: 2.494492e-06	ci right 6.856073e-06	k: 17	n:3970000
Cons ci ratio: 5.626555e-03	ci left: 1.086370e-01	ci right 1.092502e-01	k: 432505	n:3970000
KS ci ratio: 1.600332e+00	ci left: 4.089388e-07	ci right 2.939124e-06	k: 5	n:3970000
RPAP2   3970000 perm   7688 sec   (516 perm/sec)   p_kst 1.259446e-06   p_cons 1.089433e-01   p_joint 4.282116e-06

Joint ci ratio: 1.181923e+00	ci left: 1.204872e-06	ci right 4.620688e-06	k: 10	n:3980000
Cons ci ratio: 5.619660e-03	ci left: 1.086313e-01	ci right 1.092437e-01	k: 433570	n:3980000
KS ci ratio: 1.600332e+00	ci left: 4.079113e-07	ci right 2.931739e-06	k: 5	n:3980000
RPAP2   3980000 perm   7724 sec   (515 perm/sec)   p_kst 1.256281e-06   p_cons 1.089372e-01   p_joint 2.512563e-06

Joint ci ratio: 1.181923e+00	ci left: 1.201852e-06	ci right 4.609107e-06	k: 10	n:3990000
Cons ci ratio: 5.613007e-03	ci left: 1.086180e-01	ci right 1.092297e-01	k: 434605	n:3990000
KS ci ratio: 1.600332e+00	ci left: 4.068889e-07	ci right 2.924392e-06	k: 5	n:3990000
RPAP2   3990000 perm   7761 sec   (514 perm/sec)   p_kst 1.253133e-06   p_cons 1.089236e-01   p_joint 2.506266e-06

Joint ci ratio: 1.181923e+00	ci left: 1.198848e-06	ci right 4.597584e-06	k: 10	n:4000000
Cons ci ratio: 5.606024e-03	ci left: 1.086171e-01	ci right 1.092280e-01	k: 435689	n:4000000
KS ci ratio: 1.600332e+00	ci left: 4.058717e-07	ci right 2.917081e-06	k: 5	n:4000000
RPAP2   4000000 perm   7797 sec   (513 perm/sec)   p_kst 1.250000e-06   p_cons 1.089222e-01   p_joint 2.500000e-06

Joint ci ratio: 1.181923e+00	ci left: 1.195858e-06	ci right 4.586119e-06	k: 10	n:4010000
Cons ci ratio: 5.598866e-03	ci left: 1.086232e-01	ci right 1.092333e-01	k: 436801	n:4010000
KS ci ratio: 1.600332e+00	ci left: 4.048596e-07	ci right 2.909806e-06	k: 5	n:4010000
RPAP2   4010000 perm   7834 sec   (512 perm/sec)   p_kst 1.246883e-06   p_cons 1.089279e-01   p_joint 2.493766e-06

Joint ci ratio: 1.181923e+00	ci left: 1.192883e-06	ci right 4.574711e-06	k: 10	n:4020000
Cons ci ratio: 5.591886e-03	ci left: 1.086240e-01	ci right 1.092333e-01	k: 437892	n:4020000
KS ci ratio: 1.600332e+00	ci left: 4.038525e-07	ci right 2.902568e-06	k: 5	n:4020000
RPAP2   4020000 perm   7870 sec   (511 perm/sec)   p_kst 1.243781e-06   p_cons 1.089284e-01   p_joint 2.487562e-06

Joint ci ratio: 1.181923e+00	ci left: 1.189923e-06	ci right 4.563359e-06	k: 10	n:4030000
Cons ci ratio: 5.584846e-03	ci left: 1.086277e-01	ci right 1.092363e-01	k: 438995	n:4030000
KS ci ratio: 1.600332e+00	ci left: 4.028503e-07	ci right 2.895365e-06	k: 5	n:4030000
RPAP2   4030000 perm   7907 sec   (510 perm/sec)   p_kst 1.240695e-06   p_cons 1.089318e-01   p_joint 2.481390e-06

Joint ci ratio: 1.181923e+00	ci left: 1.186978e-06	ci right 4.552064e-06	k: 10	n:4040000
Cons ci ratio: 5.577818e-03	ci left: 1.086320e-01	ci right 1.092399e-01	k: 440100	n:4040000
KS ci ratio: 1.600332e+00	ci left: 4.018532e-07	ci right 2.888199e-06	k: 5	n:4040000
RPAP2   4040000 perm   7944 sec   (509 perm/sec)   p_kst 1.237624e-06   p_cons 1.089356e-01   p_joint 2.475248e-06

Joint ci ratio: 1.181923e+00	ci left: 1.184047e-06	ci right 4.540824e-06	k: 10	n:4050000
Cons ci ratio: 5.571086e-03	ci left: 1.086269e-01	ci right 1.092340e-01	k: 441167	n:4050000
KS ci ratio: 1.600332e+00	ci left: 4.008610e-07	ci right 2.881067e-06	k: 5	n:4050000
RPAP2   4050000 perm   7982 sec   (507 perm/sec)   p_kst 1.234568e-06   p_cons 1.089301e-01   p_joint 2.469136e-06

Joint ci ratio: 1.181923e+00	ci left: 1.181131e-06	ci right 4.529640e-06	k: 10	n:4060000
Cons ci ratio: 5.564357e-03	ci left: 1.086225e-01	ci right 1.092288e-01	k: 442237	n:4060000
KS ci ratio: 1.600332e+00	ci left: 3.998736e-07	ci right 2.873971e-06	k: 5	n:4060000
RPAP2   4060000 perm   8019 sec   (506 perm/sec)   p_kst 1.231527e-06   p_cons 1.089254e-01   p_joint 2.463054e-06

Joint ci ratio: 1.181923e+00	ci left: 1.178229e-06	ci right 4.518510e-06	k: 10	n:4070000
Cons ci ratio: 5.557308e-03	ci left: 1.086302e-01	ci right 1.092358e-01	k: 443356	n:4070000
KS ci ratio: 1.600332e+00	ci left: 3.988911e-07	ci right 2.866910e-06	k: 5	n:4070000
RPAP2   4070000 perm   8057 sec   (505 perm/sec)   p_kst 1.228501e-06   p_cons 1.089327e-01   p_joint 2.457002e-06

Joint ci ratio: 1.131605e+00	ci left: 1.345873e-06	ci right 4.824024e-06	k: 11	n:4080000
Cons ci ratio: 5.550706e-03	ci left: 1.086231e-01	ci right 1.092279e-01	k: 444415	n:4080000
KS ci ratio: 1.600332e+00	ci left: 3.979134e-07	ci right 2.859883e-06	k: 5	n:4080000
RPAP2   4080000 perm   8094 sec   (504 perm/sec)   p_kst 1.225490e-06   p_cons 1.089252e-01   p_joint 2.696078e-06

Joint ci ratio: 1.131605e+00	ci left: 1.342583e-06	ci right 4.812229e-06	k: 11	n:4090000
Cons ci ratio: 5.543757e-03	ci left: 1.086290e-01	ci right 1.092331e-01	k: 445527	n:4090000
KS ci ratio: 1.600332e+00	ci left: 3.969406e-07	ci right 2.852891e-06	k: 5	n:4090000
RPAP2   4090000 perm   8132 sec   (503 perm/sec)   p_kst 1.222494e-06   p_cons 1.089308e-01   p_joint 2.689487e-06

Joint ci ratio: 1.131605e+00	ci left: 1.339308e-06	ci right 4.800492e-06	k: 11	n:4100000
Cons ci ratio: 5.537126e-03	ci left: 1.086247e-01	ci right 1.092281e-01	k: 446597	n:4100000
KS ci ratio: 1.600332e+00	ci left: 3.959724e-07	ci right 2.845932e-06	k: 5	n:4100000
RPAP2   4100000 perm   8169 sec   (502 perm/sec)   p_kst 1.219512e-06   p_cons 1.089261e-01   p_joint 2.682927e-06

Joint ci ratio: 1.131605e+00	ci left: 1.336049e-06	ci right 4.788812e-06	k: 11	n:4110000
Cons ci ratio: 5.530513e-03	ci left: 1.086206e-01	ci right 1.092232e-01	k: 447668	n:4110000
KS ci ratio: 1.600332e+00	ci left: 3.950090e-07	ci right 2.839008e-06	k: 5	n:4110000
RPAP2   4110000 perm   8207 sec   (501 perm/sec)   p_kst 1.216545e-06   p_cons 1.089217e-01   p_joint 2.676399e-06

Joint ci ratio: 1.131605e+00	ci left: 1.332807e-06	ci right 4.777189e-06	k: 11	n:4120000
Cons ci ratio: 5.523771e-03	ci left: 1.086219e-01	ci right 1.092238e-01	k: 448761	n:4120000
KS ci ratio: 1.600332e+00	ci left: 3.940502e-07	ci right 2.832117e-06	k: 5	n:4120000
RPAP2   4120000 perm   8245 sec   (500 perm/sec)   p_kst 1.213592e-06   p_cons 1.089226e-01   p_joint 2.669903e-06

Joint ci ratio: 1.131605e+00	ci left: 1.329580e-06	ci right 4.765622e-06	k: 11	n:4130000
Cons ci ratio: 5.516558e-03	ci left: 1.086406e-01	ci right 1.092418e-01	k: 449926	n:4130000
KS ci ratio: 1.600332e+00	ci left: 3.930961e-07	ci right 2.825260e-06	k: 5	n:4130000
RPAP2   4130000 perm   8284 sec   (499 perm/sec)   p_kst 1.210654e-06   p_cons 1.089409e-01   p_joint 2.663438e-06

Joint ci ratio: 1.131605e+00	ci left: 1.326368e-06	ci right 4.754111e-06	k: 11	n:4140000
Cons ci ratio: 5.509970e-03	ci left: 1.086382e-01	ci right 1.092387e-01	k: 451004	n:4140000
KS ci ratio: 1.600332e+00	ci left: 3.921466e-07	ci right 2.818435e-06	k: 5	n:4140000
RPAP2   4140000 perm   8322 sec   (497 perm/sec)   p_kst 1.207729e-06   p_cons 1.089382e-01   p_joint 2.657005e-06

Joint ci ratio: 1.131605e+00	ci left: 1.323172e-06	ci right 4.742655e-06	k: 11	n:4150000
Cons ci ratio: 5.502852e-03	ci left: 1.086553e-01	ci right 1.092551e-01	k: 452163	n:4150000
KS ci ratio: 1.600332e+00	ci left: 3.912017e-07	ci right 2.811644e-06	k: 5	n:4150000
RPAP2   4150000 perm   8359 sec   (496 perm/sec)   p_kst 1.204819e-06   p_cons 1.089549e-01   p_joint 2.650602e-06

Joint ci ratio: 1.131605e+00	ci left: 1.319991e-06	ci right 4.731254e-06	k: 11	n:4160000
Cons ci ratio: 5.496108e-03	ci left: 1.086601e-01	ci right 1.092592e-01	k: 453271	n:4160000
KS ci ratio: 1.600332e+00	ci left: 3.902613e-07	ci right 2.804885e-06	k: 5	n:4160000
RPAP2   4160000 perm   8397 sec   (495 perm/sec)   p_kst 1.201923e-06   p_cons 1.089594e-01   p_joint 2.644231e-06

Joint ci ratio: 1.239611e+00	ci left: 9.869005e-07	ci right 4.097071e-06	k: 9	n:4170000
Cons ci ratio: 5.489708e-03	ci left: 1.086536e-01	ci right 1.092520e-01	k: 454332	n:4170000
KS ci ratio: 1.600332e+00	ci left: 3.893254e-07	ci right 2.798159e-06	k: 5	n:4170000
RPAP2   4170000 perm   8435 sec   (494 perm/sec)   p_kst 1.199041e-06   p_cons 1.089525e-01   p_joint 2.158273e-06

Joint ci ratio: 1.239611e+00	ci left: 9.845395e-07	ci right 4.087270e-06	k: 9	n:4180000
Cons ci ratio: 5.483587e-03	ci left: 1.086381e-01	ci right 1.092357e-01	k: 455355	n:4180000
KS ci ratio: 1.600332e+00	ci left: 3.883940e-07	ci right 2.791465e-06	k: 5	n:4180000
RPAP2   4180000 perm   8473 sec   (493 perm/sec)   p_kst 1.196172e-06   p_cons 1.089366e-01   p_joint 2.153110e-06

Joint ci ratio: 1.239611e+00	ci left: 9.821897e-07	ci right 4.077515e-06	k: 9	n:4190000
Cons ci ratio: 5.477305e-03	ci left: 1.086290e-01	ci right 1.092259e-01	k: 456405	n:4190000
KS ci ratio: 1.600332e+00	ci left: 3.874670e-07	ci right 2.784803e-06	k: 5	n:4190000
RPAP2   4190000 perm   8511 sec   (492 perm/sec)   p_kst 1.193317e-06   p_cons 1.089272e-01   p_joint 2.147971e-06

Joint ci ratio: 1.239611e+00	ci left: 9.798512e-07	ci right 4.067806e-06	k: 9	n:4200000
Cons ci ratio: 5.470473e-03	ci left: 1.086403e-01	ci right 1.092365e-01	k: 457540	n:4200000
KS ci ratio: 1.600332e+00	ci left: 3.865445e-07	ci right 2.778172e-06	k: 5	n:4200000
RPAP2   4200000 perm   8550 sec   (491 perm/sec)   p_kst 1.190476e-06   p_cons 1.089381e-01   p_joint 2.142857e-06

Joint ci ratio: 1.239611e+00	ci left: 9.775238e-07	ci right 4.058144e-06	k: 9	n:4210000
Cons ci ratio: 5.463982e-03	ci left: 1.086403e-01	ci right 1.092358e-01	k: 458628	n:4210000
KS ci ratio: 1.600332e+00	ci left: 3.856263e-07	ci right 2.771573e-06	k: 5	n:4210000
RPAP2   4210000 perm   8589 sec   (490 perm/sec)   p_kst 1.187648e-06   p_cons 1.089378e-01   p_joint 2.137767e-06

Joint ci ratio: 1.239611e+00	ci left: 9.752073e-07	ci right 4.048528e-06	k: 9	n:4220000
Cons ci ratio: 5.457220e-03	ci left: 1.086507e-01	ci right 1.092455e-01	k: 459760	n:4220000
KS ci ratio: 1.600332e+00	ci left: 3.847125e-07	ci right 2.765005e-06	k: 5	n:4220000
RPAP2   4220000 perm   8627 sec   (489 perm/sec)   p_kst 1.184834e-06   p_cons 1.089479e-01   p_joint 2.132701e-06

Joint ci ratio: 1.239611e+00	ci left: 9.729019e-07	ci right 4.038957e-06	k: 9	n:4230000
Cons ci ratio: 5.450822e-03	ci left: 1.086491e-01	ci right 1.092432e-01	k: 460841	n:4230000
KS ci ratio: 1.600332e+00	ci left: 3.838030e-07	ci right 2.758469e-06	k: 5	n:4230000
RPAP2   4230000 perm   8667 sec   (488 perm/sec)   p_kst 1.182033e-06   p_cons 1.089459e-01   p_joint 2.127660e-06

Joint ci ratio: 1.239611e+00	ci left: 9.706073e-07	ci right 4.029431e-06	k: 9	n:4240000
Cons ci ratio: 5.444049e-03	ci left: 1.086616e-01	ci right 1.092550e-01	k: 461982	n:4240000
KS ci ratio: 1.600332e+00	ci left: 3.828978e-07	ci right 2.751963e-06	k: 5	n:4240000
RPAP2   4240000 perm   8706 sec   (487 perm/sec)   p_kst 1.179245e-06   p_cons 1.089580e-01   p_joint 2.122642e-06

Joint ci ratio: 1.239611e+00	ci left: 9.683235e-07	ci right 4.019950e-06	k: 9	n:4250000
Cons ci ratio: 5.437915e-03	ci left: 1.086522e-01	ci right 1.092448e-01	k: 463030	n:4250000
KS ci ratio: 1.600332e+00	ci left: 3.819969e-07	ci right 2.745488e-06	k: 5	n:4250000
RPAP2   4250000 perm   8747 sec   (486 perm/sec)   p_kst 1.176471e-06   p_cons 1.089482e-01   p_joint 2.117647e-06

Joint ci ratio: 1.239611e+00	ci left: 9.660505e-07	ci right 4.010513e-06	k: 9	n:4260000
Cons ci ratio: 5.431407e-03	ci left: 1.086569e-01	ci right 1.092488e-01	k: 464138	n:4260000
KS ci ratio: 1.600332e+00	ci left: 3.811002e-07	ci right 2.739043e-06	k: 5	n:4260000
RPAP2   4260000 perm   8787 sec   (485 perm/sec)   p_kst 1.173709e-06   p_cons 1.089526e-01   p_joint 2.112676e-06

Joint ci ratio: 1.239611e+00	ci left: 9.637880e-07	ci right 4.001121e-06	k: 9	n:4270000
Cons ci ratio: 5.424942e-03	ci left: 1.086608e-01	ci right 1.092521e-01	k: 465243	n:4270000
KS ci ratio: 1.600332e+00	ci left: 3.802077e-07	ci right 2.732628e-06	k: 5	n:4270000
RPAP2   4270000 perm   8827 sec   (484 perm/sec)   p_kst 1.170960e-06   p_cons 1.089562e-01   p_joint 2.107728e-06

Joint ci ratio: 1.239611e+00	ci left: 9.615362e-07	ci right 3.991773e-06	k: 9	n:4280000
Cons ci ratio: 5.418324e-03	ci left: 1.086711e-01	ci right 1.092617e-01	k: 466375	n:4280000
KS ci ratio: 1.600332e+00	ci left: 3.793194e-07	ci right 2.726244e-06	k: 5	n:4280000
RPAP2   4280000 perm   8866 sec   (483 perm/sec)   p_kst 1.168224e-06   p_cons 1.089661e-01   p_joint 2.102804e-06

Joint ci ratio: 1.239611e+00	ci left: 9.592949e-07	ci right 3.982468e-06	k: 9	n:4290000
Cons ci ratio: 5.412166e-03	ci left: 1.086657e-01	ci right 1.092556e-01	k: 467440	n:4290000
KS ci ratio: 1.600332e+00	ci left: 3.784352e-07	ci right 2.719889e-06	k: 5	n:4290000
RPAP2   4290000 perm   8906 sec   (482 perm/sec)   p_kst 1.165501e-06   p_cons 1.089604e-01   p_joint 2.097902e-06

Joint ci ratio: 1.239611e+00	ci left: 9.570639e-07	ci right 3.973206e-06	k: 9	n:4300000
Cons ci ratio: 5.406093e-03	ci left: 1.086580e-01	ci right 1.092472e-01	k: 468495	n:4300000
KS ci ratio: 1.600332e+00	ci left: 3.775551e-07	ci right 2.713563e-06	k: 5	n:4300000
RPAP2   4300000 perm   8945 sec   (481 perm/sec)   p_kst 1.162791e-06   p_cons 1.089523e-01   p_joint 2.093023e-06

Joint ci ratio: 1.239611e+00	ci left: 9.548434e-07	ci right 3.963988e-06	k: 9	n:4310000
Cons ci ratio: 5.399402e-03	ci left: 1.086733e-01	ci right 1.092618e-01	k: 469649	n:4310000
KS ci ratio: 1.600332e+00	ci left: 3.766791e-07	ci right 2.707268e-06	k: 5	n:4310000
RPAP2   4310000 perm   8986 sec   (480 perm/sec)   p_kst 1.160093e-06   p_cons 1.089673e-01   p_joint 2.088167e-06

Joint ci ratio: 1.239611e+00	ci left: 9.526331e-07	ci right 3.954812e-06	k: 9	n:4320000
Cons ci ratio: 5.393159e-03	ci left: 1.086732e-01	ci right 1.092611e-01	k: 470737	n:4320000
KS ci ratio: 1.600332e+00	ci left: 3.758071e-07	ci right 2.701001e-06	k: 5	n:4320000
RPAP2   4320000 perm   9025 sec   (479 perm/sec)   p_kst 1.157407e-06   p_cons 1.089669e-01   p_joint 2.083333e-06

Joint ci ratio: 1.239611e+00	ci left: 9.504330e-07	ci right 3.945678e-06	k: 9	n:4330000
Cons ci ratio: 5.386587e-03	ci left: 1.086859e-01	ci right 1.092731e-01	k: 471880	n:4330000
KS ci ratio: 1.600332e+00	ci left: 3.749392e-07	ci right 2.694763e-06	k: 5	n:4330000
RPAP2   4330000 perm   9065 sec   (478 perm/sec)   p_kst 1.154734e-06   p_cons 1.089792e-01   p_joint 2.078522e-06

Joint ci ratio: 1.239611e+00	ci left: 9.482431e-07	ci right 3.936587e-06	k: 9	n:4340000
Cons ci ratio: 5.380516e-03	ci left: 1.086812e-01	ci right 1.092677e-01	k: 472948	n:4340000
KS ci ratio: 1.600332e+00	ci left: 3.740753e-07	ci right 2.688554e-06	k: 5	n:4340000
RPAP2   4340000 perm   9106 sec   (477 perm/sec)   p_kst 1.152074e-06   p_cons 1.089742e-01   p_joint 2.073733e-06

Joint ci ratio: 1.239611e+00	ci left: 9.460632e-07	ci right 3.927537e-06	k: 9	n:4350000
Cons ci ratio: 5.374295e-03	ci left: 1.086827e-01	ci right 1.092686e-01	k: 474043	n:4350000
KS ci ratio: 1.600332e+00	ci left: 3.732154e-07	ci right 2.682373e-06	k: 5	n:4350000
RPAP2   4350000 perm   9145 sec   (476 perm/sec)   p_kst 1.149425e-06   p_cons 1.089754e-01   p_joint 2.068966e-06

Joint ci ratio: 1.239611e+00	ci left: 9.438933e-07	ci right 3.918529e-06	k: 9	n:4360000
Cons ci ratio: 5.368089e-03	ci left: 1.086845e-01	ci right 1.092697e-01	k: 475139	n:4360000
KS ci ratio: 1.600332e+00	ci left: 3.723594e-07	ci right 2.676221e-06	k: 5	n:4360000
RPAP2   4360000 perm   9186 sec   (475 perm/sec)   p_kst 1.146789e-06   p_cons 1.089768e-01   p_joint 2.064220e-06

Joint ci ratio: 1.181923e+00	ci left: 1.097343e-06	ci right 4.208315e-06	k: 10	n:4370000
Cons ci ratio: 5.361929e-03	ci left: 1.086853e-01	ci right 1.092699e-01	k: 476231	n:4370000
KS ci ratio: 1.481619e+00	ci left: 5.038661e-07	ci right 2.988436e-06	k: 6	n:4370000
RPAP2   4370000 perm   9227 sec   (474 perm/sec)   p_kst 1.372998e-06   p_cons 1.089773e-01   p_joint 2.288330e-06

Joint ci ratio: 1.181923e+00	ci left: 1.094838e-06	ci right 4.198707e-06	k: 10	n:4380000
Cons ci ratio: 5.355835e-03	ci left: 1.086846e-01	ci right 1.092685e-01	k: 477316	n:4380000
KS ci ratio: 1.481619e+00	ci left: 5.027157e-07	ci right 2.981613e-06	k: 6	n:4380000
RPAP2   4380000 perm   9266 sec   (473 perm/sec)   p_kst 1.369863e-06   p_cons 1.089763e-01   p_joint 2.283105e-06

Joint ci ratio: 1.181923e+00	ci left: 1.092344e-06	ci right 4.189143e-06	k: 10	n:4390000
Cons ci ratio: 5.349836e-03	ci left: 1.086811e-01	ci right 1.092643e-01	k: 478389	n:4390000
KS ci ratio: 1.481619e+00	ci left: 5.015706e-07	ci right 2.974821e-06	k: 6	n:4390000
RPAP2   4390000 perm   9307 sec   (472 perm/sec)   p_kst 1.366743e-06   p_cons 1.089724e-01   p_joint 2.277904e-06

Joint ci ratio: 1.181923e+00	ci left: 1.089862e-06	ci right 4.179622e-06	k: 10	n:4400000
Cons ci ratio: 5.343739e-03	ci left: 1.086819e-01	ci right 1.092645e-01	k: 479481	n:4400000
KS ci ratio: 1.481619e+00	ci left: 5.004307e-07	ci right 2.968060e-06	k: 6	n:4400000
RPAP2   4400000 perm   9347 sec   (471 perm/sec)   p_kst 1.363636e-06   p_cons 1.089730e-01   p_joint 2.272727e-06

Joint ci ratio: 1.181923e+00	ci left: 1.087390e-06	ci right 4.170145e-06	k: 10	n:4410000
Cons ci ratio: 5.337850e-03	ci left: 1.086760e-01	ci right 1.092579e-01	k: 480543	n:4410000
KS ci ratio: 1.481619e+00	ci left: 4.992959e-07	ci right 2.961330e-06	k: 6	n:4410000
RPAP2   4410000 perm   9388 sec   (470 perm/sec)   p_kst 1.360544e-06   p_cons 1.089667e-01   p_joint 2.267574e-06

Joint ci ratio: 1.181923e+00	ci left: 1.084930e-06	ci right 4.160710e-06	k: 10	n:4420000
Cons ci ratio: 5.331483e-03	ci left: 1.086881e-01	ci right 1.092694e-01	k: 481685	n:4420000
KS ci ratio: 1.481619e+00	ci left: 4.981663e-07	ci right 2.954630e-06	k: 6	n:4420000
RPAP2   4420000 perm   9429 sec   (469 perm/sec)   p_kst 1.357466e-06   p_cons 1.089785e-01   p_joint 2.262443e-06

Joint ci ratio: 1.181923e+00	ci left: 1.082481e-06	ci right 4.151318e-06	k: 10	n:4430000
Cons ci ratio: 5.325721e-03	ci left: 1.086791e-01	ci right 1.092596e-01	k: 482733	n:4430000
KS ci ratio: 1.481619e+00	ci left: 4.970417e-07	ci right 2.947960e-06	k: 6	n:4430000
RPAP2   4430000 perm   9474 sec   (468 perm/sec)   p_kst 1.354402e-06   p_cons 1.089691e-01   p_joint 2.257336e-06

Joint ci ratio: 1.181923e+00	ci left: 1.080043e-06	ci right 4.141968e-06	k: 10	n:4440000
Cons ci ratio: 5.319897e-03	ci left: 1.086729e-01	ci right 1.092528e-01	k: 483794	n:4440000
KS ci ratio: 1.481619e+00	ci left: 4.959223e-07	ci right 2.941321e-06	k: 6	n:4440000
RPAP2   4440000 perm   9515 sec   (467 perm/sec)   p_kst 1.351351e-06   p_cons 1.089626e-01   p_joint 2.252252e-06

Joint ci ratio: 1.181923e+00	ci left: 1.077616e-06	ci right 4.132660e-06	k: 10	n:4450000
Cons ci ratio: 5.313785e-03	ci left: 1.086780e-01	ci right 1.092573e-01	k: 484905	n:4450000
KS ci ratio: 1.481619e+00	ci left: 4.948079e-07	ci right 2.934711e-06	k: 6	n:4450000
RPAP2   4450000 perm   9556 sec   (466 perm/sec)   p_kst 1.348315e-06   p_cons 1.089674e-01   p_joint 2.247191e-06

Joint ci ratio: 1.131605e+00	ci left: 1.231202e-06	ci right 4.413009e-06	k: 11	n:4460000
Cons ci ratio: 5.308117e-03	ci left: 1.086677e-01	ci right 1.092463e-01	k: 485947	n:4460000
KS ci ratio: 1.385928e+00	ci left: 6.310233e-07	ci right 3.233781e-06	k: 7	n:4460000
RPAP2   4460000 perm   9597 sec   (465 perm/sec)   p_kst 1.569507e-06   p_cons 1.089567e-01   p_joint 2.466368e-06

Joint ci ratio: 1.131605e+00	ci left: 1.228448e-06	ci right 4.403136e-06	k: 11	n:4470000
Cons ci ratio: 5.302180e-03	ci left: 1.086679e-01	ci right 1.092458e-01	k: 487036	n:4470000
KS ci ratio: 1.385928e+00	ci left: 6.296116e-07	ci right 3.226547e-06	k: 7	n:4470000
RPAP2   4470000 perm   9639 sec   (464 perm/sec)   p_kst 1.565996e-06   p_cons 1.089566e-01   p_joint 2.460850e-06

Joint ci ratio: 1.131605e+00	ci left: 1.225706e-06	ci right 4.393308e-06	k: 11	n:4480000
Cons ci ratio: 5.296408e-03	ci left: 1.086627e-01	ci right 1.092400e-01	k: 488101	n:4480000
KS ci ratio: 1.385928e+00	ci left: 6.282063e-07	ci right 3.219345e-06	k: 7	n:4480000
RPAP2   4480000 perm   9679 sec   (463 perm/sec)   p_kst 1.562500e-06   p_cons 1.089511e-01   p_joint 2.455357e-06

Joint ci ratio: 1.131605e+00	ci left: 1.222976e-06	ci right 4.383523e-06	k: 11	n:4490000
Cons ci ratio: 5.290516e-03	ci left: 1.086627e-01	ci right 1.092393e-01	k: 489189	n:4490000
KS ci ratio: 1.385928e+00	ci left: 6.268071e-07	ci right 3.212174e-06	k: 7	n:4490000
RPAP2   4490000 perm   9720 sec   (462 perm/sec)   p_kst 1.559020e-06   p_cons 1.089508e-01   p_joint 2.449889e-06

Joint ci ratio: 1.131605e+00	ci left: 1.220258e-06	ci right 4.373782e-06	k: 11	n:4500000
Cons ci ratio: 5.284904e-03	ci left: 1.086532e-01	ci right 1.092291e-01	k: 490234	n:4500000
KS ci ratio: 1.385928e+00	ci left: 6.254142e-07	ci right 3.205036e-06	k: 7	n:4500000
RPAP2   4500000 perm   9762 sec   (461 perm/sec)   p_kst 1.555556e-06   p_cons 1.089409e-01   p_joint 2.444444e-06

Joint ci ratio: 1.131605e+00	ci left: 1.217553e-06	ci right 4.364084e-06	k: 11	n:4510000
Cons ci ratio: 5.279080e-03	ci left: 1.086521e-01	ci right 1.092274e-01	k: 491317	n:4510000
KS ci ratio: 1.385928e+00	ci left: 6.240275e-07	ci right 3.197930e-06	k: 7	n:4510000
RPAP2   4510000 perm   9804 sec   (460 perm/sec)   p_kst 1.552106e-06   p_cons 1.089395e-01   p_joint 2.439024e-06

Joint ci ratio: 1.131605e+00	ci left: 1.214859e-06	ci right 4.354429e-06	k: 11	n:4520000
Cons ci ratio: 5.273420e-03	ci left: 1.086457e-01	ci right 1.092203e-01	k: 492376	n:4520000
KS ci ratio: 1.385928e+00	ci left: 6.226469e-07	ci right 3.190855e-06	k: 7	n:4520000
RPAP2   4520000 perm   9846 sec   (459 perm/sec)   p_kst 1.548673e-06   p_cons 1.089327e-01   p_joint 2.433628e-06

Joint ci ratio: 1.131605e+00	ci left: 1.212177e-06	ci right 4.344817e-06	k: 11	n:4530000
Cons ci ratio: 5.267502e-03	ci left: 1.086494e-01	ci right 1.092235e-01	k: 493481	n:4530000
KS ci ratio: 1.385928e+00	ci left: 6.212724e-07	ci right 3.183811e-06	k: 7	n:4530000
RPAP2   4530000 perm   9887 sec   (458 perm/sec)   p_kst 1.545254e-06   p_cons 1.089362e-01   p_joint 2.428256e-06

Joint ci ratio: 1.131605e+00	ci left: 1.209507e-06	ci right 4.335247e-06	k: 11	n:4540000
Cons ci ratio: 5.261760e-03	ci left: 1.086475e-01	ci right 1.092209e-01	k: 494560	n:4540000
KS ci ratio: 1.385928e+00	ci left: 6.199040e-07	ci right 3.176798e-06	k: 7	n:4540000
RPAP2   4540000 perm   9928 sec   (457 perm/sec)   p_kst 1.541850e-06   p_cons 1.089339e-01   p_joint 2.422907e-06

Joint ci ratio: 1.131605e+00	ci left: 1.206849e-06	ci right 4.325719e-06	k: 11	n:4550000
Cons ci ratio: 5.256030e-03	ci left: 1.086457e-01	ci right 1.092185e-01	k: 495640	n:4550000
KS ci ratio: 1.385928e+00	ci left: 6.185415e-07	ci right 3.169816e-06	k: 7	n:4550000
RPAP2   4550000 perm   9971 sec   (456 perm/sec)   p_kst 1.538462e-06   p_cons 1.089319e-01   p_joint 2.417582e-06

Joint ci ratio: 1.131605e+00	ci left: 1.204202e-06	ci right 4.316232e-06	k: 11	n:4560000
Cons ci ratio: 5.250064e-03	ci left: 1.086534e-01	ci right 1.092256e-01	k: 496763	n:4560000
KS ci ratio: 1.385928e+00	ci left: 6.171851e-07	ci right 3.162865e-06	k: 7	n:4560000
RPAP2   4560000 perm   10013 sec   (455 perm/sec)   p_kst 1.535088e-06   p_cons 1.089393e-01   p_joint 2.412281e-06

Joint ci ratio: 1.131605e+00	ci left: 1.201567e-06	ci right 4.306788e-06	k: 11	n:4570000
Cons ci ratio: 5.244307e-03	ci left: 1.086541e-01	ci right 1.092256e-01	k: 497854	n:4570000
KS ci ratio: 1.385928e+00	ci left: 6.158346e-07	ci right 3.155944e-06	k: 7	n:4570000
RPAP2   4570000 perm   10055 sec   (455 perm/sec)   p_kst 1.531729e-06   p_cons 1.089396e-01   p_joint 2.407002e-06

Joint ci ratio: 1.131605e+00	ci left: 1.198944e-06	ci right 4.297384e-06	k: 11	n:4580000
Cons ci ratio: 5.238646e-03	ci left: 1.086519e-01	ci right 1.092228e-01	k: 498932	n:4580000
KS ci ratio: 1.385928e+00	ci left: 6.144900e-07	ci right 3.149053e-06	k: 7	n:4580000
RPAP2   4580000 perm   10097 sec   (454 perm/sec)   p_kst 1.528384e-06   p_cons 1.089371e-01   p_joint 2.401747e-06

Joint ci ratio: 1.131605e+00	ci left: 1.196332e-06	ci right 4.288022e-06	k: 11	n:4590000
Cons ci ratio: 5.232686e-03	ci left: 1.086615e-01	ci right 1.092318e-01	k: 500064	n:4590000
KS ci ratio: 1.385928e+00	ci left: 6.131512e-07	ci right 3.142193e-06	k: 7	n:4590000
RPAP2   4590000 perm   10138 sec   (453 perm/sec)   p_kst 1.525054e-06   p_cons 1.089464e-01   p_joint 2.396514e-06

Joint ci ratio: 1.131605e+00	ci left: 1.193731e-06	ci right 4.278700e-06	k: 11	n:4600000
Cons ci ratio: 5.227249e-03	ci left: 1.086524e-01	ci right 1.092220e-01	k: 501110	n:4600000
KS ci ratio: 1.385928e+00	ci left: 6.118183e-07	ci right 3.135362e-06	k: 7	n:4600000
RPAP2   4600000 perm   10181 sec   (452 perm/sec)   p_kst 1.521739e-06   p_cons 1.089370e-01   p_joint 2.391304e-06

Joint ci ratio: 1.131605e+00	ci left: 1.191142e-06	ci right 4.269419e-06	k: 11	n:4610000
Cons ci ratio: 5.221206e-03	ci left: 1.086665e-01	ci right 1.092355e-01	k: 502263	n:4610000
KS ci ratio: 1.385928e+00	ci left: 6.104911e-07	ci right 3.128560e-06	k: 7	n:4610000
RPAP2   4610000 perm   10224 sec   (451 perm/sec)   p_kst 1.518438e-06   p_cons 1.089508e-01   p_joint 2.386117e-06

Joint ci ratio: 1.131605e+00	ci left: 1.188563e-06	ci right 4.260177e-06	k: 11	n:4620000
Cons ci ratio: 5.215549e-03	ci left: 1.086669e-01	ci right 1.092353e-01	k: 503353	n:4620000
KS ci ratio: 1.385928e+00	ci left: 6.091697e-07	ci right 3.121789e-06	k: 7	n:4620000
RPAP2   4620000 perm   10267 sec   (450 perm/sec)   p_kst 1.515152e-06   p_cons 1.089509e-01   p_joint 2.380952e-06

Joint ci ratio: 1.131605e+00	ci left: 1.185996e-06	ci right 4.250976e-06	k: 11	n:4630000
Cons ci ratio: 5.209969e-03	ci left: 1.086651e-01	ci right 1.092330e-01	k: 504433	n:4630000
KS ci ratio: 1.385928e+00	ci left: 6.078540e-07	ci right 3.115046e-06	k: 7	n:4630000
RPAP2   4630000 perm   10311 sec   (449 perm/sec)   p_kst 1.511879e-06   p_cons 1.089488e-01   p_joint 2.375810e-06

Joint ci ratio: 1.131605e+00	ci left: 1.183440e-06	ci right 4.241815e-06	k: 11	n:4640000
Cons ci ratio: 5.204360e-03	ci left: 1.086651e-01	ci right 1.092323e-01	k: 505521	n:4640000
KS ci ratio: 1.385928e+00	ci left: 6.065440e-07	ci right 3.108333e-06	k: 7	n:4640000
RPAP2   4640000 perm   10354 sec   (448 perm/sec)   p_kst 1.508621e-06   p_cons 1.089485e-01   p_joint 2.370690e-06

Joint ci ratio: 1.131605e+00	ci left: 1.180895e-06	ci right 4.232693e-06	k: 11	n:4650000
Cons ci ratio: 5.198896e-03	ci left: 1.086604e-01	ci right 1.092270e-01	k: 506587	n:4650000
KS ci ratio: 1.385928e+00	ci left: 6.052396e-07	ci right 3.101648e-06	k: 7	n:4650000
RPAP2   4650000 perm   10397 sec   (447 perm/sec)   p_kst 1.505376e-06   p_cons 1.089434e-01   p_joint 2.365591e-06

Joint ci ratio: 1.131605e+00	ci left: 1.178361e-06	ci right 4.223609e-06	k: 11	n:4660000
Cons ci ratio: 5.193588e-03	ci left: 1.086505e-01	ci right 1.092165e-01	k: 507629	n:4660000
KS ci ratio: 1.385928e+00	ci left: 6.039408e-07	ci right 3.094992e-06	k: 7	n:4660000
RPAP2   4660000 perm   10440 sec   (446 perm/sec)   p_kst 1.502146e-06   p_cons 1.089333e-01   p_joint 2.360515e-06

Joint ci ratio: 1.131605e+00	ci left: 1.175838e-06	ci right 4.214565e-06	k: 11	n:4670000
Cons ci ratio: 5.188209e-03	ci left: 1.086439e-01	ci right 1.092092e-01	k: 508686	n:4670000
KS ci ratio: 1.385928e+00	ci left: 6.026475e-07	ci right 3.088365e-06	k: 7	n:4670000
RPAP2   4670000 perm   10484 sec   (445 perm/sec)   p_kst 1.498929e-06   p_cons 1.089263e-01   p_joint 2.355460e-06

Joint ci ratio: 1.131605e+00	ci left: 1.173325e-06	ci right 4.205560e-06	k: 11	n:4680000
Cons ci ratio: 5.182807e-03	ci left: 1.086388e-01	ci right 1.092035e-01	k: 509750	n:4680000
KS ci ratio: 1.385928e+00	ci left: 6.013598e-07	ci right 3.081766e-06	k: 7	n:4680000
RPAP2   4680000 perm   10529 sec   (444 perm/sec)   p_kst 1.495726e-06   p_cons 1.089209e-01   p_joint 2.350427e-06

Joint ci ratio: 1.131605e+00	ci left: 1.170824e-06	ci right 4.196593e-06	k: 11	n:4690000
Cons ci ratio: 5.177303e-03	ci left: 1.086382e-01	ci right 1.092023e-01	k: 510835	n:4690000
KS ci ratio: 1.385928e+00	ci left: 6.000776e-07	ci right 3.075195e-06	k: 7	n:4690000
RPAP2   4690000 perm   10573 sec   (444 perm/sec)   p_kst 1.492537e-06   p_cons 1.089200e-01   p_joint 2.345416e-06

Joint ci ratio: 1.131605e+00	ci left: 1.168333e-06	ci right 4.187664e-06	k: 11	n:4700000
Cons ci ratio: 5.171867e-03	ci left: 1.086357e-01	ci right 1.091992e-01	k: 511911	n:4700000
KS ci ratio: 1.385928e+00	ci left: 5.988009e-07	ci right 3.068652e-06	k: 7	n:4700000
RPAP2   4700000 perm   10617 sec   (443 perm/sec)   p_kst 1.489362e-06   p_cons 1.089172e-01   p_joint 2.340426e-06

Joint ci ratio: 1.131605e+00	ci left: 1.165852e-06	ci right 4.178773e-06	k: 11	n:4710000
Cons ci ratio: 5.166584e-03	ci left: 1.086281e-01	ci right 1.091910e-01	k: 512963	n:4710000
KS ci ratio: 1.385928e+00	ci left: 5.975295e-07	ci right 3.062137e-06	k: 7	n:4710000
RPAP2   4710000 perm   10660 sec   (442 perm/sec)   p_kst 1.486200e-06   p_cons 1.089093e-01   p_joint 2.335456e-06

Joint ci ratio: 1.131605e+00	ci left: 1.163382e-06	ci right 4.169920e-06	k: 11	n:4720000
Cons ci ratio: 5.161137e-03	ci left: 1.086274e-01	ci right 1.091896e-01	k: 514047	n:4720000
KS ci ratio: 1.385928e+00	ci left: 5.962636e-07	ci right 3.055649e-06	k: 7	n:4720000
RPAP2   4720000 perm   10704 sec   (441 perm/sec)   p_kst 1.483051e-06   p_cons 1.089083e-01   p_joint 2.330508e-06

Joint ci ratio: 1.131605e+00	ci left: 1.160922e-06	ci right 4.161104e-06	k: 11	n:4730000
Cons ci ratio: 5.155650e-03	ci left: 1.086287e-01	ci right 1.091904e-01	k: 515141	n:4730000
KS ci ratio: 1.385928e+00	ci left: 5.950030e-07	ci right 3.049189e-06	k: 7	n:4730000
RPAP2   4730000 perm   10749 sec   (440 perm/sec)   p_kst 1.479915e-06   p_cons 1.089093e-01   p_joint 2.325581e-06

Joint ci ratio: 1.131605e+00	ci left: 1.158473e-06	ci right 4.152325e-06	k: 11	n:4740000
Cons ci ratio: 5.149997e-03	ci left: 1.086370e-01	ci right 1.091981e-01	k: 516268	n:4740000
KS ci ratio: 1.385928e+00	ci left: 5.937477e-07	ci right 3.042756e-06	k: 7	n:4740000
RPAP2   4740000 perm   10794 sec   (439 perm/sec)   p_kst 1.476793e-06   p_cons 1.089173e-01   p_joint 2.320675e-06

Joint ci ratio: 1.131605e+00	ci left: 1.156034e-06	ci right 4.143583e-06	k: 11	n:4750000
Cons ci ratio: 5.144641e-03	ci left: 1.086347e-01	ci right 1.091952e-01	k: 517345	n:4750000
KS ci ratio: 1.385928e+00	ci left: 5.924977e-07	ci right 3.036350e-06	k: 7	n:4750000
RPAP2   4750000 perm   10838 sec   (438 perm/sec)   p_kst 1.473684e-06   p_cons 1.089147e-01   p_joint 2.315789e-06

Joint ci ratio: 1.131605e+00	ci left: 1.153606e-06	ci right 4.134878e-06	k: 11	n:4760000
Cons ci ratio: 5.139229e-03	ci left: 1.086352e-01	ci right 1.091951e-01	k: 518435	n:4760000
KS ci ratio: 1.385928e+00	ci left: 5.912529e-07	ci right 3.029971e-06	k: 7	n:4760000
RPAP2   4760000 perm   10883 sec   (437 perm/sec)   p_kst 1.470588e-06   p_cons 1.089149e-01   p_joint 2.310924e-06

Joint ci ratio: 1.131605e+00	ci left: 1.151187e-06	ci right 4.126210e-06	k: 11	n:4770000
Cons ci ratio: 5.133696e-03	ci left: 1.086409e-01	ci right 1.092003e-01	k: 519550	n:4770000
KS ci ratio: 1.385928e+00	ci left: 5.900134e-07	ci right 3.023619e-06	k: 7	n:4770000
RPAP2   4770000 perm   10928 sec   (437 perm/sec)   p_kst 1.467505e-06   p_cons 1.089203e-01   p_joint 2.306080e-06

Joint ci ratio: 1.131605e+00	ci left: 1.148779e-06	ci right 4.117578e-06	k: 11	n:4780000
Cons ci ratio: 5.128137e-03	ci left: 1.086482e-01	ci right 1.092070e-01	k: 520673	n:4780000
KS ci ratio: 1.385928e+00	ci left: 5.887791e-07	ci right 3.017294e-06	k: 7	n:4780000
RPAP2   4780000 perm   10972 sec   (436 perm/sec)   p_kst 1.464435e-06   p_cons 1.089274e-01   p_joint 2.301255e-06

Joint ci ratio: 1.131605e+00	ci left: 1.146381e-06	ci right 4.108981e-06	k: 11	n:4790000
Cons ci ratio: 5.122727e-03	ci left: 1.086506e-01	ci right 1.092088e-01	k: 521772	n:4790000
KS ci ratio: 1.385928e+00	ci left: 5.875499e-07	ci right 3.010995e-06	k: 7	n:4790000
RPAP2   4790000 perm   11018 sec   (435 perm/sec)   p_kst 1.461378e-06   p_cons 1.089294e-01   p_joint 2.296451e-06

Joint ci ratio: 1.131605e+00	ci left: 1.143992e-06	ci right 4.100421e-06	k: 11	n:4800000
Cons ci ratio: 5.117302e-03	ci left: 1.086541e-01	ci right 1.092118e-01	k: 522877	n:4800000
KS ci ratio: 1.385928e+00	ci left: 5.863258e-07	ci right 3.004722e-06	k: 7	n:4800000
RPAP2   4800000 perm   11062 sec   (434 perm/sec)   p_kst 1.458333e-06   p_cons 1.089327e-01   p_joint 2.291667e-06

Joint ci ratio: 1.131605e+00	ci left: 1.141614e-06	ci right 4.091896e-06	k: 11	n:4810000
Cons ci ratio: 5.111949e-03	ci left: 1.086556e-01	ci right 1.092127e-01	k: 523972	n:4810000
KS ci ratio: 1.385928e+00	ci left: 5.851069e-07	ci right 2.998475e-06	k: 7	n:4810000
RPAP2   4810000 perm   11107 sec   (433 perm/sec)   p_kst 1.455301e-06   p_cons 1.089339e-01   p_joint 2.286902e-06

Joint ci ratio: 1.131605e+00	ci left: 1.139245e-06	ci right 4.083407e-06	k: 11	n:4820000
Cons ci ratio: 5.106661e-03	ci left: 1.086552e-01	ci right 1.092117e-01	k: 525058	n:4820000
KS ci ratio: 1.385928e+00	ci left: 5.838929e-07	ci right 2.992254e-06	k: 7	n:4820000
RPAP2   4820000 perm   11152 sec   (432 perm/sec)   p_kst 1.452282e-06   p_cons 1.089332e-01   p_joint 2.282158e-06

Joint ci ratio: 1.131605e+00	ci left: 1.136887e-06	ci right 4.074953e-06	k: 11	n:4830000
Cons ci ratio: 5.101510e-03	ci left: 1.086502e-01	ci right 1.092061e-01	k: 526122	n:4830000
KS ci ratio: 1.385928e+00	ci left: 5.826841e-07	ci right 2.986059e-06	k: 7	n:4830000
RPAP2   4830000 perm   11197 sec   (431 perm/sec)   p_kst 1.449275e-06   p_cons 1.089280e-01   p_joint 2.277433e-06

Joint ci ratio: 1.131605e+00	ci left: 1.134538e-06	ci right 4.066533e-06	k: 11	n:4840000
Cons ci ratio: 5.096081e-03	ci left: 1.086565e-01	ci right 1.092118e-01	k: 527240	n:4840000
KS ci ratio: 1.385928e+00	ci left: 5.814802e-07	ci right 2.979889e-06	k: 7	n:4840000
RPAP2   4840000 perm   11242 sec   (431 perm/sec)   p_kst 1.446281e-06   p_cons 1.089339e-01   p_joint 2.272727e-06

Joint ci ratio: 1.131605e+00	ci left: 1.132199e-06	ci right 4.058149e-06	k: 11	n:4850000
Cons ci ratio: 5.090767e-03	ci left: 1.086589e-01	ci right 1.092137e-01	k: 528340	n:4850000
KS ci ratio: 1.385928e+00	ci left: 5.802812e-07	ci right 2.973745e-06	k: 7	n:4850000
RPAP2   4850000 perm   11288 sec   (430 perm/sec)   p_kst 1.443299e-06   p_cons 1.089361e-01   p_joint 2.268041e-06

Joint ci ratio: 1.131605e+00	ci left: 1.129869e-06	ci right 4.049799e-06	k: 11	n:4860000
Cons ci ratio: 5.085696e-03	ci left: 1.086528e-01	ci right 1.092070e-01	k: 529398	n:4860000
KS ci ratio: 1.385928e+00	ci left: 5.790872e-07	ci right 2.967626e-06	k: 7	n:4860000
RPAP2   4860000 perm   11332 sec   (429 perm/sec)   p_kst 1.440329e-06   p_cons 1.089296e-01   p_joint 2.263374e-06

Joint ci ratio: 1.131605e+00	ci left: 1.127549e-06	ci right 4.041483e-06	k: 11	n:4870000
Cons ci ratio: 5.080307e-03	ci left: 1.086594e-01	ci right 1.092130e-01	k: 530518	n:4870000
KS ci ratio: 1.385928e+00	ci left: 5.778981e-07	ci right 2.961533e-06	k: 7	n:4870000
RPAP2   4870000 perm   11377 sec   (428 perm/sec)   p_kst 1.437372e-06   p_cons 1.089359e-01   p_joint 2.258727e-06

Joint ci ratio: 1.131605e+00	ci left: 1.125238e-06	ci right 4.033201e-06	k: 11	n:4880000
Cons ci ratio: 5.075176e-03	ci left: 1.086567e-01	ci right 1.092097e-01	k: 531593	n:4880000
KS ci ratio: 1.385928e+00	ci left: 5.767139e-07	ci right 2.955464e-06	k: 7	n:4880000
RPAP2   4880000 perm   11422 sec   (427 perm/sec)   p_kst 1.434426e-06   p_cons 1.089330e-01   p_joint 2.254098e-06

Joint ci ratio: 1.131605e+00	ci left: 1.122937e-06	ci right 4.024953e-06	k: 11	n:4890000
Cons ci ratio: 5.070184e-03	ci left: 1.086494e-01	ci right 1.092018e-01	k: 532645	n:4890000
KS ci ratio: 1.385928e+00	ci left: 5.755346e-07	ci right 2.949420e-06	k: 7	n:4890000
RPAP2   4890000 perm   11468 sec   (426 perm/sec)   p_kst 1.431493e-06   p_cons 1.089254e-01   p_joint 2.249489e-06

Joint ci ratio: 1.131605e+00	ci left: 1.120645e-06	ci right 4.016739e-06	k: 11	n:4900000
Cons ci ratio: 5.064955e-03	ci left: 1.086516e-01	ci right 1.092035e-01	k: 533744	n:4900000
KS ci ratio: 1.385928e+00	ci left: 5.743600e-07	ci right 2.943401e-06	k: 7	n:4900000
RPAP2   4900000 perm   11513 sec   (426 perm/sec)   p_kst 1.428571e-06   p_cons 1.089273e-01   p_joint 2.244898e-06

Joint ci ratio: 1.131605e+00	ci left: 1.118363e-06	ci right 4.008558e-06	k: 11	n:4910000
Cons ci ratio: 5.059871e-03	ci left: 1.086490e-01	ci right 1.092003e-01	k: 534819	n:4910000
KS ci ratio: 1.385928e+00	ci left: 5.731902e-07	ci right 2.937406e-06	k: 7	n:4910000
RPAP2   4910000 perm   11559 sec   (425 perm/sec)   p_kst 1.425662e-06   p_cons 1.089244e-01   p_joint 2.240326e-06

Joint ci ratio: 1.131605e+00	ci left: 1.116090e-06	ci right 4.000411e-06	k: 11	n:4920000
Cons ci ratio: 5.054791e-03	ci left: 1.086468e-01	ci right 1.091976e-01	k: 535896	n:4920000
KS ci ratio: 1.385928e+00	ci left: 5.720252e-07	ci right 2.931436e-06	k: 7	n:4920000
RPAP2   4920000 perm   11603 sec   (424 perm/sec)   p_kst 1.422764e-06   p_cons 1.089220e-01   p_joint 2.235772e-06

Joint ci ratio: 1.131605e+00	ci left: 1.113826e-06	ci right 3.992296e-06	k: 11	n:4930000
Cons ci ratio: 5.049573e-03	ci left: 1.086505e-01	ci right 1.092007e-01	k: 537002	n:4930000
KS ci ratio: 1.385928e+00	ci left: 5.708649e-07	ci right 2.925490e-06	k: 7	n:4930000
RPAP2   4930000 perm   11650 sec   (423 perm/sec)   p_kst 1.419878e-06   p_cons 1.089254e-01   p_joint 2.231237e-06

Joint ci ratio: 1.131605e+00	ci left: 1.111571e-06	ci right 3.984215e-06	k: 11	n:4940000
Cons ci ratio: 5.044719e-03	ci left: 1.086408e-01	ci right 1.091904e-01	k: 538042	n:4940000
KS ci ratio: 1.385928e+00	ci left: 5.697093e-07	ci right 2.919568e-06	k: 7	n:4940000
RPAP2   4940000 perm   11695 sec   (422 perm/sec)   p_kst 1.417004e-06   p_cons 1.089154e-01   p_joint 2.226721e-06

Joint ci ratio: 1.131605e+00	ci left: 1.109326e-06	ci right 3.976166e-06	k: 11	n:4950000
Cons ci ratio: 5.039579e-03	ci left: 1.086427e-01	ci right 1.091917e-01	k: 539139	n:4950000
KS ci ratio: 1.385928e+00	ci left: 5.685584e-07	ci right 2.913670e-06	k: 7	n:4950000
RPAP2   4950000 perm   11743 sec   (422 perm/sec)   p_kst 1.414141e-06   p_cons 1.089170e-01   p_joint 2.222222e-06

Joint ci ratio: 1.131605e+00	ci left: 1.107089e-06	ci right 3.968149e-06	k: 11	n:4960000
Cons ci ratio: 5.034581e-03	ci left: 1.086397e-01	ci right 1.091882e-01	k: 540212	n:4960000
KS ci ratio: 1.385928e+00	ci left: 5.674121e-07	ci right 2.907795e-06	k: 7	n:4960000
RPAP2   4960000 perm   11789 sec   (421 perm/sec)   p_kst 1.411290e-06   p_cons 1.089137e-01   p_joint 2.217742e-06

Joint ci ratio: 1.131605e+00	ci left: 1.104862e-06	ci right 3.960165e-06	k: 11	n:4970000
Cons ci ratio: 5.029264e-03	ci left: 1.086496e-01	ci right 1.091976e-01	k: 541349	n:4970000
KS ci ratio: 1.385928e+00	ci left: 5.662704e-07	ci right 2.901945e-06	k: 7	n:4970000
RPAP2   4970000 perm   11835 sec   (420 perm/sec)   p_kst 1.408451e-06   p_cons 1.089233e-01   p_joint 2.213280e-06

Joint ci ratio: 1.131605e+00	ci left: 1.102643e-06	ci right 3.952213e-06	k: 11	n:4980000
Cons ci ratio: 5.024411e-03	ci left: 1.086422e-01	ci right 1.091896e-01	k: 542400	n:4980000
KS ci ratio: 1.385928e+00	ci left: 5.651333e-07	ci right 2.896117e-06	k: 7	n:4980000
RPAP2   4980000 perm   11882 sec   (419 perm/sec)   p_kst 1.405622e-06   p_cons 1.089157e-01   p_joint 2.208835e-06

Joint ci ratio: 1.131605e+00	ci left: 1.100433e-06	ci right 3.944293e-06	k: 11	n:4990000
Cons ci ratio: 5.019489e-03	ci left: 1.086380e-01	ci right 1.091849e-01	k: 543467	n:4990000
KS ci ratio: 1.385928e+00	ci left: 5.640008e-07	ci right 2.890314e-06	k: 7	n:4990000
RPAP2   4990000 perm   11928 sec   (418 perm/sec)   p_kst 1.402806e-06   p_cons 1.089112e-01   p_joint 2.204409e-06

Joint ci ratio: 1.131605e+00	ci left: 1.098233e-06	ci right 3.936404e-06	k: 11	n:5000000
Cons ci ratio: 5.014457e-03	ci left: 1.086387e-01	ci right 1.091850e-01	k: 544558	n:5000000
KS ci ratio: 1.385928e+00	ci left: 5.628728e-07	ci right 2.884533e-06	k: 7	n:5000000
RPAP2   5000000 perm   11973 sec   (418 perm/sec)   p_kst 1.400000e-06   p_cons 1.089116e-01   p_joint 2.200000e-06

Outputting figure to mutsig2_images.part000000000149/RPAP2.3_1891_5000000_1.4e-06_0.10891_2.2e-06.png
                gene_name: RPAP2
               theta_stop: 1.4 
                    nperm: 5000000 
                     p_ks: 1.40e-06 
        ci_ks_bounds_left: 5.63e-07 
       ci_ks_bounds_right: 2.88e-06 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 2.20e-06 
     ci_joint_bounds_left: 1.10e-06 
    ci_joint_bounds_right: 3.94e-06 

Current progress: 57 percent done.
RPAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.122226e-02	ci left: 6.021669e-01	ci right 6.213680e-01	k: 6118	n:10000
Cons ci ratio: 5.759258e-02	ci left: 3.073885e-01	ci right 3.257185e-01	k: 3165	n:10000
KS ci ratio: 1.766676e-02	ci left: 8.237123e-01	ci right 8.384943e-01	k: 8312	n:10000
RPAP3   10000 perm   2 sec   (5668 perm/sec)   p_kst 8.312000e-01   p_cons 3.165000e-01   p_joint 6.118000e-01

Outputting figure to mutsig2_images.part000000000149/RPAP3.3_2062_10000_0.8312_0.3165_0.6118.png
                gene_name: RPAP3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 60 percent done.
RPIA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.409025e-02	ci left: 2.105324e-01	ci right 2.268318e-01	k: 2186	n:10000
Cons ci ratio: 6.829591e-02	ci left: 2.392637e-01	ci right 2.562834e-01	k: 2477	n:10000
KS ci ratio: 7.094230e-02	ci left: 2.255330e-01	ci right 2.422223e-01	k: 2338	n:10000
RPIA   10000 perm   2 sec   (6067 perm/sec)   p_kst 2.338000e-01   p_cons 2.477000e-01   p_joint 2.186000e-01

Outputting figure to mutsig2_images.part000000000149/RPIA.3_972_10000_0.2338_0.2477_0.2186.png
                gene_name: RPIA
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 63 percent done.
RPL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.310919e-01	ci left: 6.437624e-03	ci right 1.005764e-02	k: 81	n:10000
Cons ci ratio: 7.331842e-02	ci left: 2.140838e-01	ci right 2.304783e-01	k: 2222	n:10000
KS ci ratio: 3.602602e-01	ci left: 9.594514e-03	ci right 1.389697e-02	k: 116	n:10000
RPL6   10000 perm   2 sec   (6139 perm/sec)   p_kst 1.160000e-02   p_cons 2.222000e-01   p_joint 8.100000e-03

Joint ci ratio: 2.364985e-01	ci left: 1.194666e-02	ci right 1.519704e-02	k: 270	n:20000
Cons ci ratio: 4.972732e-02	ci left: 2.311201e-01	ci right 2.429564e-01	k: 4740	n:20000
KS ci ratio: 2.415168e-01	ci left: 1.142923e-02	ci right 1.461469e-02	k: 259	n:20000
RPL6   20000 perm   4 sec   (5209 perm/sec)   p_kst 1.295000e-02   p_cons 2.370000e-01   p_joint 1.350000e-02

Joint ci ratio: 1.565686e-01	ci left: 1.886230e-02	ci right 2.209817e-02	k: 613	n:30000
Cons ci ratio: 4.051830e-02	ci left: 2.329582e-01	ci right 2.426259e-01	k: 7133	n:30000
KS ci ratio: 1.894727e-01	ci left: 1.273282e-02	ci right 1.542916e-02	k: 421	n:30000
RPL6   30000 perm   6 sec   (4772 perm/sec)   p_kst 1.403333e-02   p_cons 2.377667e-01   p_joint 2.043333e-02

Joint ci ratio: 1.476112e-01	ci left: 1.604487e-02	ci right 1.862589e-02	k: 692	n:40000
Cons ci ratio: 3.513355e-02	ci left: 2.331624e-01	ci right 2.415257e-01	k: 9493	n:40000
KS ci ratio: 1.646337e-01	ci left: 1.282353e-02	ci right 1.514781e-02	k: 558	n:40000
RPL6   40000 perm   9 sec   (4685 perm/sec)   p_kst 1.395000e-02   p_cons 2.373250e-01   p_joint 1.730000e-02

Joint ci ratio: 1.496330e-01	ci left: 1.252605e-02	ci right 1.457100e-02	k: 676	n:50000
Cons ci ratio: 3.150362e-02	ci left: 2.327012e-01	ci right 2.401694e-01	k: 11821	n:50000
KS ci ratio: 1.477634e-01	ci left: 1.285356e-02	ci right 1.492345e-02	k: 693	n:50000
RPL6   50000 perm   11 sec   (4613 perm/sec)   p_kst 1.386000e-02   p_cons 2.364200e-01   p_joint 1.352000e-02

Joint ci ratio: 1.108037e-01	ci left: 1.929999e-02	ci right 2.158006e-02	k: 1225	n:60000
Cons ci ratio: 2.876062e-02	ci left: 2.330049e-01	ci right 2.398206e-01	k: 14184	n:60000
KS ci ratio: 1.341398e-01	ci left: 1.309124e-02	ci right 1.498952e-02	k: 841	n:60000
RPL6   60000 perm   13 sec   (4529 perm/sec)   p_kst 1.401667e-02   p_cons 2.364000e-01   p_joint 2.041667e-02

Joint ci ratio: 1.124722e-01	ci left: 1.609695e-02	ci right 1.802909e-02	k: 1193	n:70000
Cons ci ratio: 2.659263e-02	ci left: 2.337256e-01	ci right 2.400390e-01	k: 16581	n:70000
KS ci ratio: 1.243393e-01	ci left: 1.312883e-02	ci right 1.488322e-02	k: 979	n:70000
RPL6   70000 perm   16 sec   (4397 perm/sec)   p_kst 1.398571e-02   p_cons 2.368714e-01   p_joint 1.704286e-02

Joint ci ratio: 1.011222e-01	ci left: 1.750435e-02	ci right 1.938081e-02	k: 1474	n:80000
Cons ci ratio: 2.492672e-02	ci left: 2.331854e-01	ci right 2.390838e-01	k: 18890	n:80000
KS ci ratio: 1.163616e-01	ci left: 1.317298e-02	ci right 1.481255e-02	k: 1118	n:80000
RPL6   80000 perm   18 sec   (4335 perm/sec)   p_kst 1.397500e-02   p_cons 2.361250e-01   p_joint 1.842500e-02

Joint ci ratio: 9.454036e-02	ci left: 1.785753e-02	ci right 1.964035e-02	k: 1686	n:90000
Cons ci ratio: 2.349997e-02	ci left: 2.333727e-01	ci right 2.389332e-01	k: 21253	n:90000
KS ci ratio: 1.089144e-01	ci left: 1.341553e-02	ci right 1.497157e-02	k: 1276	n:90000
RPL6   90000 perm   21 sec   (4223 perm/sec)   p_kst 1.417778e-02   p_cons 2.361444e-01   p_joint 1.873333e-02

Joint ci ratio: 9.069114e-02	ci left: 1.750759e-02	ci right 1.918052e-02	k: 1833	n:100000
Cons ci ratio: 2.229438e-02	ci left: 2.335104e-01	ci right 2.387850e-01	k: 23614	n:100000
KS ci ratio: 1.033951e-01	ci left: 1.343683e-02	ci right 1.491155e-02	k: 1416	n:100000
RPL6   100000 perm   24 sec   (4151 perm/sec)   p_kst 1.416000e-02   p_cons 2.361400e-01   p_joint 1.833000e-02

Joint ci ratio: 9.171353e-02	ci left: 1.558658e-02	ci right 1.709362e-02	k: 1796	n:110000
Cons ci ratio: 2.125016e-02	ci left: 2.337467e-01	ci right 2.387763e-01	k: 25988	n:110000
KS ci ratio: 9.915607e-02	ci left: 1.331398e-02	ci right 1.471182e-02	k: 1540	n:110000
RPL6   110000 perm   28 sec   (3981 perm/sec)   p_kst 1.400000e-02   p_cons 2.362545e-01   p_joint 1.632727e-02

Outputting figure to mutsig2_images.part000000000149/RPL6.3_891_110000_0.014_0.23625_0.016327.png
                gene_name: RPL6
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 66 percent done.
RORA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.550859e-02	ci left: 8.578398e-01	ci right 8.713470e-01	k: 8647	n:10000
KS ci ratio: 1.706549e-02	ci left: 8.333784e-01	ci right 8.478226e-01	k: 8407	n:10000
RORA   10000 perm   2 sec   (4359 perm/sec)   p_kst 8.407000e-01   p_cons 8.647000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RORA.2_2096_10000_0.8407_0.8647_1.png
                gene_name: RORA
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
RPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.924117e-02	ci left: 4.895516e-01	ci right 5.092488e-01	k: 4994	n:10000
Cons ci ratio: 5.163782e-02	ci left: 3.560517e-01	ci right 3.750267e-01	k: 3655	n:10000
KS ci ratio: 8.015541e-02	ci left: 1.852067e-01	ci right 2.007725e-01	k: 1929	n:10000
RPA1   10000 perm   2 sec   (5861 perm/sec)   p_kst 1.929000e-01   p_cons 3.655000e-01   p_joint 4.994000e-01

Outputting figure to mutsig2_images.part000000000149/RPA1.2_1919_10000_0.1929_0.3655_0.4994.png
                gene_name: RPA1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 71 percent done.
RPAIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.271375e-02	ci left: 4.473000e-01	ci right 4.669250e-01	k: 4571	n:10000
KS ci ratio: 1.223412e-02	ci left: 9.055571e-01	ci right 9.168020e-01	k: 9113	n:10000
RPAIN   10000 perm   2 sec   (6577 perm/sec)   p_kst 9.113000e-01   p_cons 4.571000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RPAIN.2_754_10000_0.9113_0.4571_1.png
                gene_name: RPAIN
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
RPE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.857837e-02	ci left: 8.088732e-01	ci right 8.241419e-01	k: 8166	n:10000
Cons ci ratio: 2.354916e-02	ci left: 7.260304e-01	ci right 7.434327e-01	k: 7348	n:10000
KS ci ratio: 3.606605e-02	ci left: 5.316731e-01	ci right 5.513027e-01	k: 5415	n:10000
RPE   10000 perm   1 sec   (6670 perm/sec)   p_kst 5.415000e-01   p_cons 7.348000e-01   p_joint 8.166000e-01

Outputting figure to mutsig2_images.part000000000149/RPE.2_769_10000_0.5415_0.7348_0.8166.png
                gene_name: RPE
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 77 percent done.
RPL10A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.051180e-02	ci left: 2.865679e-01	ci right 3.045513e-01	k: 2955	n:10000
Cons ci ratio: 2.092792e-02	ci left: 7.699268e-01	ci right 7.863109e-01	k: 7782	n:10000
KS ci ratio: 6.369573e-02	ci left: 2.658691e-01	ci right 2.834624e-01	k: 2746	n:10000
RPL10A   10000 perm   2 sec   (6367 perm/sec)   p_kst 2.746000e-01   p_cons 7.782000e-01   p_joint 2.955000e-01

Outputting figure to mutsig2_images.part000000000149/RPL10A.2_678_10000_0.2746_0.7782_0.2955.png
                gene_name: RPL10A
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 80 percent done.
RPL10L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.101880e-02	ci left: 7.684076e-01	ci right 7.848309e-01	k: 7767	n:10000
KS ci ratio: 9.944982e-03	ci left: 9.347514e-01	ci right 9.441906e-01	k: 9396	n:10000
RPL10L   10000 perm   1 sec   (7031 perm/sec)   p_kst 9.396000e-01   p_cons 7.767000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RPL10L.2_649_10000_0.9396_0.7767_1.png
                gene_name: RPL10L
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
RPL22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.427486e-02	ci left: 7.139129e-01	ci right 7.315572e-01	k: 7228	n:10000
KS ci ratio: 1.840456e-02	ci left: 8.117176e-01	ci right 8.268959e-01	k: 8194	n:10000
RPL22   10000 perm   1 sec   (7064 perm/sec)   p_kst 8.194000e-01   p_cons 7.228000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RPL22.2_403_10000_0.8194_0.7228_1.png
                gene_name: RPL22
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
RPL28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.138375e-01	ci left: 9.993440e-02	ci right 1.120962e-01	k: 1059	n:10000
Cons ci ratio: 1.701460e-01	ci left: 4.609774e-02	ci right 5.476655e-02	k: 503	n:10000
KS ci ratio: 4.179607e-02	ci left: 4.580809e-01	ci right 4.777378e-01	k: 4679	n:10000
RPL28   10000 perm   2 sec   (6265 perm/sec)   p_kst 4.679000e-01   p_cons 5.030000e-02   p_joint 1.059000e-01

Joint ci ratio: 6.476770e-02	ci left: 1.497631e-01	ci right 1.598375e-01	k: 3095	n:20000
Cons ci ratio: 1.222419e-01	ci left: 4.590339e-02	ci right 5.192862e-02	k: 977	n:20000
KS ci ratio: 2.948261e-02	ci left: 4.622136e-01	ci right 4.760954e-01	k: 9383	n:20000
RPL28   20000 perm   4 sec   (5347 perm/sec)   p_kst 4.691500e-01   p_cons 4.885000e-02   p_joint 1.547500e-01

Joint ci ratio: 6.422225e-02	ci left: 1.069078e-01	ci right 1.140345e-01	k: 3313	n:30000
Cons ci ratio: 9.952582e-02	ci left: 4.671454e-02	ci right 5.163990e-02	k: 1474	n:30000
KS ci ratio: 2.403849e-02	ci left: 4.642055e-01	ci right 4.755337e-01	k: 14096	n:30000
RPL28   30000 perm   6 sec   (5069 perm/sec)   p_kst 4.698667e-01   p_cons 4.913333e-02   p_joint 1.104333e-01

Outputting figure to mutsig2_images.part000000000149/RPL28.2_856_30000_0.46987_0.049133_0.11043.png
                gene_name: RPL28
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 89 percent done.
RPL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.595771e-03	ci left: 9.499184e-01	ci right 9.582145e-01	k: 9542	n:10000
Cons ci ratio: 6.167987e-02	ci left: 2.787412e-01	ci right 2.965826e-01	k: 2876	n:10000
KS ci ratio: 1.990030e-02	ci left: 7.870536e-01	ci right 8.029742e-01	k: 7951	n:10000
RPL3   10000 perm   2 sec   (6474 perm/sec)   p_kst 7.951000e-01   p_cons 2.876000e-01   p_joint 9.542000e-01

Outputting figure to mutsig2_images.part000000000149/RPL3.2_1252_10000_0.7951_0.2876_0.9542.png
                gene_name: RPL3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 91 percent done.
RPL31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.658081e-02	ci left: 6.757928e-01	ci right 6.940994e-01	k: 6850	n:10000
KS ci ratio: 6.090642e-02	ci left: 2.838926e-01	ci right 3.018282e-01	k: 2928	n:10000
RPL31   10000 perm   1 sec   (6825 perm/sec)   p_kst 2.928000e-01   p_cons 6.850000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RPL31.2_459_10000_0.2928_0.685_1.png
                gene_name: RPL31
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
RPL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.811184e-02	ci left: 5.041511e-01	ci right 5.238407e-01	k: 5140	n:10000
Cons ci ratio: 5.449446e-02	ci left: 3.316070e-01	ci right 3.502858e-01	k: 3409	n:10000
KS ci ratio: 5.054278e-02	ci left: 3.659962e-01	ci right 3.850763e-01	k: 3755	n:10000
RPL4   10000 perm   2 sec   (6438 perm/sec)   p_kst 3.755000e-01   p_cons 3.409000e-01   p_joint 5.140000e-01

Outputting figure to mutsig2_images.part000000000149/RPL4.2_1324_10000_0.3755_0.3409_0.514.png
                gene_name: RPL4
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 97 percent done.
RPLP0
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.713038e-02	ci left: 6.668278e-01	ci right 6.852695e-01	k: 6761	n:10000
KS ci ratio: 1.668823e-02	ci left: 8.393860e-01	ci right 8.536115e-01	k: 8466	n:10000
RPLP0   10000 perm   2 sec   (6637 perm/sec)   p_kst 8.466000e-01   p_cons 6.761000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000149/RPLP0.2_982_10000_0.8466_0.6761_1.png
                gene_name: RPLP0
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000149
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 149 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1708>
Subject: Job 9894119: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1708>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000150> was used as the working directory.
Started at Sat Oct  6 00:27:40 2012
Results reported at Sat Oct  6 00:35:55 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000150.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000150.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 150  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000150.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    497.74 sec.
    Max Memory :      3498 MB
    Max Swap   :      5933 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
150
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 150
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 150: processing genes 13433 - 13523
Calculating significance of each gene.
Using projection method.
13433	RPN2	8.185553e-01
13434	RPP14	2.005182e-01
13435	RPP21	1
13436	RPP25	1
13437	RPP30	7.116538e-01
13438	RPP38	5.017750e-01
13439	RPP40	3.490362e-01
13440	RPRD1A	3.406461e-01
13441	RPRD1B	4.313980e-01
13442	RPRD2	6.453377e-01
13443	RPRM	4.537448e-01
13444	RPRML	1
13445	RPS10	1
13446	RPS11	2.787602e-01
13447	RPS12	1
13448	RPS13	5.222062e-01
13449	RPS14	1
13450	RPS15	1
13451	RPS15A	4.925985e-01
13452	RPS16	5.605859e-02
13453	RPS18	1.040007e-01
13454	RPS19	1
13455	RPS19BP1	4.239712e-01
13456	RPS2	5.462574e-01
13457	RPS20	4.619231e-01
13458	RPS21	1
13459	RPS23	5.746621e-03
13460	RPS24	1
13461	RPS25	1
13462	RPS26	1
13463	RPS27	1
13464	RPS27A	1
13465	RPS27L	2.754787e-01
13466	RPS28	1
13467	RPS29	1
13468	RPS3	2.126534e-01
13469	RPS3A	1
13470	RPS4X	2.301835e-01
13471	RPS4Y1	1
13472	RPS4Y2	1
13473	RPS5	1
13474	RPS6	1
13475	RPS6KA1	9.871233e-01
13476	RPS6KA2	1.679491e-01
13477	RPS6KA3	3.039873e-01
13478	RPS6KA4	1
13479	RPS6KA5	6.141170e-01
In gene RPS6KA6 the following bins exceed PROBCAP:
    READ-AG-4015	categ 6	N = 2269    n = 1	mu =   3.29e-07
13480	RPS6KA6	1.660305e-02
13481	RPS6KB1	4.001075e-01
13482	RPS6KB2	5.963576e-01
13483	RPS6KC1	6.720185e-01
13484	RPS6KL1	1
13485	RPS7	1
13486	RPS8	1
13487	RPS9	4.691343e-01
13488	RPSA	6.729667e-01
13489	RPTN	1
13490	RPTOR	6.717850e-01
13491	RPUSD1	1
13492	RPUSD2	1
13493	RPUSD3	1
13494	RPUSD4	2.489024e-01
13495	RQCD1	7.034851e-01
13496	RRAD	6.840519e-02
13497	RRAGA	1
13498	RRAGB	1.306534e-01
13499	RRAGC	1.924737e-01
13500	RRAGD	5.064464e-01
13501	RRAS	1
13502	RRAS2	2.708430e-01
13503	RRBP1	9.045417e-01
13504	RREB1	9.902766e-01
13505	RRH	3.369582e-01
13506	RRM1	8.514760e-01
13507	RRM2	3.933550e-01
13508	RRM2B	1
13509	RRN3	9.580275e-01
13510	RRP1	1
13511	RRP12	9.968844e-01
13512	RRP15	1
13513	RRP1B	4.178244e-01
13514	RRP7A	1
13515	RRP8	3.560482e-01
13516	RRP9	3.451465e-02
13517	RRS1	1
13518	RS1	5.382905e-01
13519	RSAD1	4.134438e-01
13520	RSAD2	2.185656e-01
13521	RSBN1	6.170725e-01
13522	RSBN1L	9.921870e-01
13523	RSC1A1	6.316787e-01
Done

Running MutSig 2:
Scatter job 150: processing genes 13433 - 13523
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RPS6KA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.184346e-02	ci left: 5.927292e-01	ci right 6.120111e-01	k: 6024	n:10000
Cons ci ratio: 1.473772e-02	ci left: 8.695851e-01	ci right 8.825950e-01	k: 8762	n:10000
KS ci ratio: 5.547877e-02	ci left: 3.236634e-01	ci right 3.422340e-01	k: 3329	n:10000
RPS6KA2   10000 perm   2 sec   (4563 perm/sec)   p_kst 3.329000e-01   p_cons 8.762000e-01   p_joint 6.024000e-01

Outputting figure to mutsig2_images.part000000000150/RPS6KA2.10_2417_10000_0.3329_0.8762_0.6024.png
                gene_name: RPS6KA2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 3 percent done.
RPTOR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.232413e-02	ci left: 5.855029e-01	ci right 6.048417e-01	k: 5952	n:10000
Cons ci ratio: 2.878780e-02	ci left: 6.401566e-01	ci right 6.589562e-01	k: 6496	n:10000
KS ci ratio: 5.242615e-02	ci left: 3.490931e-01	ci right 3.679893e-01	k: 3585	n:10000
RPTOR   10000 perm   2 sec   (5100 perm/sec)   p_kst 3.585000e-01   p_cons 6.496000e-01   p_joint 5.952000e-01

Outputting figure to mutsig2_images.part000000000150/RPTOR.9_4144_10000_0.3585_0.6496_0.5952.png
                gene_name: RPTOR
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 5 percent done.
RPS6KC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.929916e-02	ci left: 2.949926e-01	ci right 3.131216e-01	k: 3040	n:10000
Cons ci ratio: 4.139542e-02	ci left: 4.628739e-01	ci right 4.825420e-01	k: 4727	n:10000
KS ci ratio: 8.558480e-02	ci left: 1.659274e-01	ci right 1.808634e-01	k: 1733	n:10000
RPS6KC1   10000 perm   2 sec   (5437 perm/sec)   p_kst 1.733000e-01   p_cons 4.727000e-01   p_joint 3.040000e-01

Outputting figure to mutsig2_images.part000000000150/RPS6KC1.8_3261_10000_0.1733_0.4727_0.304.png
                gene_name: RPS6KC1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 8 percent done.
RPRD2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.044753e-01	ci left: 1.169164e-01	ci right 1.299039e-01	k: 1233	n:10000
Cons ci ratio: 1.994172e-01	ci left: 3.348089e-02	ci right 4.099178e-02	k: 371	n:10000
KS ci ratio: 4.246508e-02	ci left: 4.501944e-01	ci right 4.698289e-01	k: 4600	n:10000
RPRD2   10000 perm   2 sec   (4825 perm/sec)   p_kst 4.600000e-01   p_cons 3.710000e-02   p_joint 1.233000e-01

Joint ci ratio: 7.585322e-02	ci left: 1.133139e-01	ci right 1.222976e-01	k: 2355	n:20000
Cons ci ratio: 1.346540e-01	ci left: 3.790672e-02	ci right 4.342783e-02	k: 812	n:20000
KS ci ratio: 3.075310e-02	ci left: 4.412907e-01	ci right 4.551243e-01	k: 8964	n:20000
RPRD2   20000 perm   5 sec   (4324 perm/sec)   p_kst 4.482000e-01   p_cons 4.060000e-02   p_joint 1.177500e-01

Joint ci ratio: 6.822447e-02	ci left: 9.574113e-02	ci right 1.025367e-01	k: 2973	n:30000
Cons ci ratio: 1.087199e-01	ci left: 3.927096e-02	ci right 4.381837e-02	k: 1245	n:30000
KS ci ratio: 2.509529e-02	ci left: 4.428607e-01	ci right 4.541493e-01	k: 13455	n:30000
RPRD2   30000 perm   7 sec   (4172 perm/sec)   p_kst 4.485000e-01   p_cons 4.150000e-02   p_joint 9.910000e-02

Joint ci ratio: 5.422552e-02	ci left: 1.124079e-01	ci right 1.186980e-01	k: 4621	n:40000
Cons ci ratio: 9.357813e-02	ci left: 4.005507e-02	ci right 4.401176e-02	k: 1680	n:40000
KS ci ratio: 2.174006e-02	ci left: 4.434677e-01	ci right 4.532398e-01	k: 17934	n:40000
RPRD2   40000 perm   10 sec   (4071 perm/sec)   p_kst 4.483500e-01   p_cons 4.200000e-02   p_joint 1.155250e-01

Outputting figure to mutsig2_images.part000000000150/RPRD2.6_4430_40000_0.44835_0.042_0.11553.png
                gene_name: RPRD2
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 11 percent done.
RPS6KA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.996660e-02	ci left: 2.304707e-01	ci right 2.472817e-01	k: 2388	n:10000
Cons ci ratio: 4.215870e-02	ci left: 4.537880e-01	ci right 4.734332e-01	k: 4636	n:10000
KS ci ratio: 1.037572e-01	ci left: 1.183824e-01	ci right 1.314370e-01	k: 1248	n:10000
RPS6KA6   10000 perm   2 sec   (5190 perm/sec)   p_kst 1.248000e-01   p_cons 4.636000e-01   p_joint 2.388000e-01

Joint ci ratio: 5.453470e-02	ci left: 1.996707e-01	ci right 2.109151e-01	k: 4105	n:20000
Cons ci ratio: 3.045950e-02	ci left: 4.460335e-01	ci right 4.598802e-01	k: 9059	n:20000
KS ci ratio: 7.298527e-02	ci left: 1.214305e-01	ci right 1.306785e-01	k: 2520	n:20000
RPS6KA6   20000 perm   4 sec   (4665 perm/sec)   p_kst 1.260000e-01   p_cons 4.529500e-01   p_joint 2.052500e-01

Outputting figure to mutsig2_images.part000000000150/RPS6KA6.7_2326_20000_0.126_0.45295_0.20525.png
                gene_name: RPS6KA6
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 13 percent done.
RRP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.087600e-02	ci left: 4.691661e-01	ci right 4.888461e-01	k: 4790	n:10000
Cons ci ratio: 2.147867e-02	ci left: 7.607128e-01	ci right 7.773302e-01	k: 7691	n:10000
KS ci ratio: 7.310703e-02	ci left: 2.150704e-01	ci right 2.314911e-01	k: 2232	n:10000
RRP9   10000 perm   2 sec   (5795 perm/sec)   p_kst 2.232000e-01   p_cons 7.691000e-01   p_joint 4.790000e-01

Outputting figure to mutsig2_images.part000000000150/RRP9.7_1488_10000_0.2232_0.7691_0.479.png
                gene_name: RRP9
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 16 percent done.
RPS6KA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.085669e-02	ci left: 3.631119e-01	ci right 3.821624e-01	k: 3726	n:10000
Cons ci ratio: 3.670253e-02	ci left: 5.229629e-01	ci right 5.426180e-01	k: 5328	n:10000
KS ci ratio: 6.342511e-02	ci left: 2.675518e-01	ci right 2.851786e-01	k: 2763	n:10000
RPS6KA5   10000 perm   2 sec   (5390 perm/sec)   p_kst 2.763000e-01   p_cons 5.328000e-01   p_joint 3.726000e-01

Outputting figure to mutsig2_images.part000000000150/RPS6KA5.6_2483_10000_0.2763_0.5328_0.3726.png
                gene_name: RPS6KA5
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 18 percent done.
RPS6KA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.288625e-02	ci left: 4.453040e-01	ci right 4.649221e-01	k: 4551	n:10000
Cons ci ratio: 9.561004e-02	ci left: 1.369772e-01	ci right 1.508309e-01	k: 1438	n:10000
KS ci ratio: 3.878868e-02	ci left: 4.953504e-01	ci right 5.150466e-01	k: 5052	n:10000
RPS6KA3   10000 perm   2 sec   (5475 perm/sec)   p_kst 5.052000e-01   p_cons 1.438000e-01   p_joint 4.551000e-01

Outputting figure to mutsig2_images.part000000000150/RPS6KA3.5_2311_10000_0.5052_0.1438_0.4551.png
                gene_name: RPS6KA3
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 21 percent done.
RPS23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.466872e-02	ci left: 2.599312e-01	ci right 2.774037e-01	k: 2686	n:10000
Cons ci ratio: 5.963710e-02	ci left: 2.926135e-01	ci right 3.107021e-01	k: 3016	n:10000
KS ci ratio: 9.309272e-02	ci left: 1.435445e-01	ci right 1.576597e-01	k: 1505	n:10000
RPS23   10000 perm   1 sec   (6847 perm/sec)   p_kst 1.505000e-01   p_cons 3.016000e-01   p_joint 2.686000e-01

Outputting figure to mutsig2_images.part000000000150/RPS23.4_448_10000_0.1505_0.3016_0.2686.png
                gene_name: RPS23
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 24 percent done.
RRAGB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.232741e-01	ci left: 2.655489e-02	ci right 3.332262e-02	k: 298	n:10000
Cons ci ratio: 1.520741e-01	ci left: 5.754436e-02	ci right 6.711256e-02	k: 622	n:10000
KS ci ratio: 1.271427e-01	ci left: 8.125571e-02	ci right 9.238637e-02	k: 867	n:10000
RRAGB   10000 perm   2 sec   (6020 perm/sec)   p_kst 8.670000e-02   p_cons 6.220000e-02   p_joint 2.980000e-02

Joint ci ratio: 1.396534e-01	ci left: 3.524760e-02	ci right 4.058782e-02	k: 757	n:20000
Cons ci ratio: 1.082782e-01	ci left: 5.816063e-02	ci right 6.486755e-02	k: 1229	n:20000
KS ci ratio: 8.942667e-02	ci left: 8.371703e-02	ci right 9.160333e-02	k: 1752	n:20000
RRAGB   20000 perm   4 sec   (5243 perm/sec)   p_kst 8.760000e-02   p_cons 6.145000e-02   p_joint 3.785000e-02

Joint ci ratio: 1.407590e-01	ci left: 2.342368e-02	ci right 2.700240e-02	k: 755	n:30000
Cons ci ratio: 8.931561e-02	ci left: 5.763236e-02	ci right 6.305317e-02	k: 1809	n:30000
KS ci ratio: 7.360926e-02	ci left: 8.317871e-02	ci right 8.956833e-02	k: 2590	n:30000
RRAGB   30000 perm   6 sec   (4924 perm/sec)   p_kst 8.633333e-02   p_cons 6.030000e-02   p_joint 2.516667e-02

Joint ci ratio: 1.107845e-01	ci left: 2.866619e-02	ci right 3.205244e-02	k: 1213	n:40000
Cons ci ratio: 7.684844e-02	ci left: 5.872314e-02	ci right 6.344083e-02	k: 2442	n:40000
KS ci ratio: 6.357330e-02	ci left: 8.403387e-02	ci right 8.957629e-02	k: 3471	n:40000
RRAGB   40000 perm   8 sec   (4733 perm/sec)   p_kst 8.677500e-02   p_cons 6.105000e-02   p_joint 3.032500e-02

Joint ci ratio: 8.111859e-02	ci left: 4.280713e-02	ci right 4.644598e-02	k: 2230	n:50000
Cons ci ratio: 6.867264e-02	ci left: 5.907517e-02	ci right 6.329596e-02	k: 3058	n:50000
KS ci ratio: 5.638650e-02	ci left: 8.564929e-02	ci right 9.063865e-02	k: 4406	n:50000
RRAGB   50000 perm   11 sec   (4627 perm/sec)   p_kst 8.812000e-02   p_cons 6.116000e-02   p_joint 4.460000e-02

Outputting figure to mutsig2_images.part000000000150/RRAGB.4_1169_50000_0.08812_0.06116_0.0446.png
                gene_name: RRAGB
               theta_stop: 0.081 
                    nperm: 50000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 26 percent done.
RRBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.263356e-02	ci left: 5.808872e-01	ci right 6.002600e-01	k: 5906	n:10000
Cons ci ratio: 6.503267e-02	ci left: 2.577545e-01	ci right 2.751817e-01	k: 2664	n:10000
KS ci ratio: 1.089155e-02	ci left: 9.231709e-01	ci right 9.333780e-01	k: 9284	n:10000
RRBP1   10000 perm   2 sec   (5404 perm/sec)   p_kst 9.284000e-01   p_cons 2.664000e-01   p_joint 5.906000e-01

Outputting figure to mutsig2_images.part000000000150/RRBP1.4_3030_10000_0.9284_0.2664_0.5906.png
                gene_name: RRBP1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 29 percent done.
RRH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.781757e-02	ci left: 8.212717e-01	ci right 8.361363e-01	k: 8288	n:10000
KS ci ratio: 1.288838e-02	ci left: 8.965182e-01	ci right 9.082462e-01	k: 9025	n:10000
RRH   10000 perm   2 sec   (6303 perm/sec)   p_kst 9.025000e-01   p_cons 8.288000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000150/RRH.4_1042_10000_0.9025_0.8288_1.png
                gene_name: RRH
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
RRP1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.432937e-02	ci left: 7.130044e-01	ci right 7.306662e-01	k: 7219	n:10000
KS ci ratio: 1.395289e-02	ci left: 8.812461e-01	ci right 8.937272e-01	k: 8876	n:10000
RRP1B   10000 perm   2 sec   (5730 perm/sec)   p_kst 8.876000e-01   p_cons 7.219000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000150/RRP1B.4_2341_10000_0.8876_0.7219_1.png
                gene_name: RRP1B
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
RSBN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.687951e-02	ci left: 4.017322e-01	ci right 4.211194e-01	k: 4114	n:10000
Cons ci ratio: 3.054934e-02	ci left: 6.125124e-01	ci right 6.316164e-01	k: 6221	n:10000
KS ci ratio: 6.056996e-02	ci left: 2.861716e-01	ci right 3.041479e-01	k: 2951	n:10000
RSBN1   10000 perm   2 sec   (5469 perm/sec)   p_kst 2.951000e-01   p_cons 6.221000e-01   p_joint 4.114000e-01

Outputting figure to mutsig2_images.part000000000150/RSBN1.4_2437_10000_0.2951_0.6221_0.4114.png
                gene_name: RSBN1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 37 percent done.
RPP40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.964204e-01	ci left: 3.452820e-02	ci right 4.214376e-02	k: 382	n:10000
Cons ci ratio: 3.088809e-02	ci left: 6.072889e-01	ci right 6.264430e-01	k: 6169	n:10000
KS ci ratio: 2.452959e-01	ci left: 2.184098e-02	ci right 2.803999e-02	k: 248	n:10000
RPP40   10000 perm   2 sec   (6170 perm/sec)   p_kst 2.480000e-02   p_cons 6.169000e-01   p_joint 3.820000e-02

Joint ci ratio: 1.375911e-01	ci left: 3.631082e-02	ci right 4.172425e-02	k: 779	n:20000
Cons ci ratio: 2.155220e-02	ci left: 6.164416e-01	ci right 6.299226e-01	k: 12464	n:20000
KS ci ratio: 1.694827e-01	ci left: 2.383866e-02	ci right 2.830057e-02	k: 520	n:20000
RPP40   20000 perm   4 sec   (5471 perm/sec)   p_kst 2.600000e-02   p_cons 6.232000e-01   p_joint 3.895000e-02

Joint ci ratio: 1.164438e-01	ci left: 3.427666e-02	ci right 3.854706e-02	k: 1091	n:30000
Cons ci ratio: 1.758635e-02	ci left: 6.179890e-01	ci right 6.289871e-01	k: 18705	n:30000
KS ci ratio: 1.369063e-01	ci left: 2.477622e-02	ci right 2.844956e-02	k: 797	n:30000
RPP40   30000 perm   6 sec   (5211 perm/sec)   p_kst 2.656667e-02   p_cons 6.235000e-01   p_joint 3.636667e-02

Joint ci ratio: 7.472117e-02	ci left: 6.196455e-02	ci right 6.679892e-02	k: 2574	n:40000
Cons ci ratio: 1.523197e-02	ci left: 6.186805e-01	ci right 6.282016e-01	k: 24938	n:40000
KS ci ratio: 1.193157e-01	ci left: 2.470519e-02	ci right 2.786409e-02	k: 1050	n:40000
RPP40   40000 perm   8 sec   (5040 perm/sec)   p_kst 2.625000e-02   p_cons 6.234500e-01   p_joint 6.435000e-02

Joint ci ratio: 8.202711e-02	ci left: 4.188547e-02	ci right 4.548775e-02	k: 2183	n:50000
Cons ci ratio: 1.361728e-02	ci left: 6.194165e-01	ci right 6.279291e-01	k: 31184	n:50000
KS ci ratio: 1.054386e-01	ci left: 2.547990e-02	ci right 2.833539e-02	k: 1344	n:50000
RPP40   50000 perm   10 sec   (4908 perm/sec)   p_kst 2.688000e-02   p_cons 6.236800e-01   p_joint 4.366000e-02

Joint ci ratio: 7.922834e-02	ci left: 3.764478e-02	ci right 4.076666e-02	k: 2351	n:60000
Cons ci ratio: 1.240519e-02	ci left: 6.207613e-01	ci right 6.285267e-01	k: 37479	n:60000
KS ci ratio: 9.576528e-02	ci left: 2.586417e-02	ci right 2.848184e-02	k: 1629	n:60000
RPP40   60000 perm   12 sec   (4800 perm/sec)   p_kst 2.715000e-02   p_cons 6.246500e-01   p_joint 3.918333e-02

Outputting figure to mutsig2_images.part000000000150/RPP40.3_1124_60000_0.02715_0.62465_0.039183.png
                gene_name: RPP40
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.041 

Current progress: 39 percent done.
RPRD1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.504075e-01	ci left: 5.879809e-02	ci right 6.845803e-02	k: 635	n:10000
Cons ci ratio: 3.141317e-02	ci left: 5.992548e-01	ci right 6.184817e-01	k: 6089	n:10000
KS ci ratio: 2.213733e-01	ci left: 2.702777e-02	ci right 3.384941e-02	k: 303	n:10000
RPRD1A   10000 perm   2 sec   (6270 perm/sec)   p_kst 3.030000e-02   p_cons 6.089000e-01   p_joint 6.350000e-02

Joint ci ratio: 1.148937e-01	ci left: 5.183164e-02	ci right 5.819850e-02	k: 1099	n:20000
Cons ci ratio: 2.208326e-02	ci left: 6.049048e-01	ci right 6.184627e-01	k: 12234	n:20000
KS ci ratio: 1.562733e-01	ci left: 2.811217e-02	ci right 3.292560e-02	k: 609	n:20000
RPRD1A   20000 perm   4 sec   (5557 perm/sec)   p_kst 3.045000e-02   p_cons 6.117000e-01   p_joint 5.495000e-02

Joint ci ratio: 7.131347e-02	ci left: 8.822763e-02	ci right 9.478506e-02	k: 2744	n:30000
Cons ci ratio: 1.794278e-02	ci left: 6.084970e-01	ci right 6.195476e-01	k: 18421	n:30000
KS ci ratio: 1.286897e-01	ci left: 2.806632e-02	ci right 3.195873e-02	k: 899	n:30000
RPRD1A   30000 perm   6 sec   (5292 perm/sec)   p_kst 2.996667e-02   p_cons 6.140333e-01   p_joint 9.146667e-02

Joint ci ratio: 6.565553e-02	ci left: 7.913219e-02	ci right 8.452870e-02	k: 3272	n:40000
Cons ci ratio: 1.553767e-02	ci left: 6.092837e-01	ci right 6.188498e-01	k: 24563	n:40000
KS ci ratio: 1.120764e-01	ci left: 2.800947e-02	ci right 3.135927e-02	k: 1186	n:40000
RPRD1A   40000 perm   8 sec   (5099 perm/sec)   p_kst 2.965000e-02   p_cons 6.140750e-01   p_joint 8.180000e-02

Joint ci ratio: 5.853161e-02	ci left: 7.990543e-02	ci right 8.474319e-02	k: 4115	n:50000
Cons ci ratio: 1.393303e-02	ci left: 6.085740e-01	ci right 6.171329e-01	k: 30643	n:50000
KS ci ratio: 1.004102e-01	ci left: 2.809280e-02	ci right 3.108215e-02	k: 1478	n:50000
RPRD1A   50000 perm   10 sec   (4974 perm/sec)   p_kst 2.956000e-02   p_cons 6.128600e-01   p_joint 8.230000e-02

Joint ci ratio: 5.471060e-02	ci left: 7.665625e-02	ci right 8.098459e-02	k: 4728	n:60000
Cons ci ratio: 1.273456e-02	ci left: 6.083711e-01	ci right 6.161847e-01	k: 36737	n:60000
KS ci ratio: 9.246469e-02	ci left: 2.773695e-02	ci right 3.044219e-02	k: 1744	n:60000
RPRD1A   60000 perm   12 sec   (4861 perm/sec)   p_kst 2.906667e-02   p_cons 6.122833e-01   p_joint 7.880000e-02

Outputting figure to mutsig2_images.part000000000150/RPRD1A.3_967_60000_0.029067_0.61228_0.0788.png
                gene_name: RPRD1A
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.081 

Current progress: 42 percent done.
RPS6KB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.121886e-01	ci left: 2.949052e-02	ci right 3.658492e-02	k: 329	n:10000
Cons ci ratio: 1.280774e-02	ci left: 8.976473e-01	ci right 9.093165e-01	k: 9036	n:10000
KS ci ratio: 3.277720e-01	ci left: 1.178961e-02	ci right 1.649967e-02	k: 140	n:10000
RPS6KB1   10000 perm   2 sec   (6248 perm/sec)   p_kst 1.400000e-02   p_cons 9.036000e-01   p_joint 3.290000e-02

Joint ci ratio: 2.018924e-01	ci left: 1.663022e-02	ci right 2.041161e-02	k: 369	n:20000
Cons ci ratio: 9.317670e-03	ci left: 8.942316e-01	ci right 9.026521e-01	k: 17970	n:20000
KS ci ratio: 2.347484e-01	ci left: 1.213498e-02	ci right 1.540863e-02	k: 274	n:20000
RPS6KB1   20000 perm   4 sec   (5536 perm/sec)   p_kst 1.370000e-02   p_cons 8.985000e-01   p_joint 1.845000e-02

Joint ci ratio: 1.618985e-01	ci left: 1.761317e-02	ci right 2.074760e-02	k: 574	n:30000
Cons ci ratio: 7.597749e-03	ci left: 8.952642e-01	ci right 9.021251e-01	k: 26962	n:30000
KS ci ratio: 1.982318e-01	ci left: 1.159035e-02	ci right 1.417193e-02	k: 385	n:30000
RPS6KB1   30000 perm   6 sec   (5063 perm/sec)   p_kst 1.283333e-02   p_cons 8.987333e-01   p_joint 1.913333e-02

Joint ci ratio: 9.375292e-02	ci left: 3.990844e-02	ci right 4.385841e-02	k: 1674	n:40000
Cons ci ratio: 6.541977e-03	ci left: 8.967905e-01	ci right 9.027013e-01	k: 35991	n:40000
KS ci ratio: 1.724683e-01	ci left: 1.164957e-02	ci right 1.387200e-02	k: 509	n:40000
RPS6KB1   40000 perm   8 sec   (4925 perm/sec)   p_kst 1.272500e-02   p_cons 8.997750e-01   p_joint 4.185000e-02

Joint ci ratio: 1.021308e-01	ci left: 2.715643e-02	ci right 3.009863e-02	k: 1430	n:50000
Cons ci ratio: 5.863392e-03	ci left: 8.967302e-01	ci right 9.020233e-01	k: 44970	n:50000
KS ci ratio: 1.549391e-01	ci left: 1.165993e-02	ci right 1.363725e-02	k: 631	n:50000
RPS6KB1   50000 perm   10 sec   (4826 perm/sec)   p_kst 1.262000e-02   p_cons 8.994000e-01   p_joint 2.860000e-02

Joint ci ratio: 1.106656e-01	ci left: 1.934864e-02	ci right 2.163141e-02	k: 1228	n:60000
Cons ci ratio: 5.348031e-03	ci left: 8.971171e-01	ci right 9.019442e-01	k: 53973	n:60000
KS ci ratio: 1.407272e-01	ci left: 1.186757e-02	ci right 1.368001e-02	k: 765	n:60000
RPS6KB1   60000 perm   13 sec   (4737 perm/sec)   p_kst 1.275000e-02   p_cons 8.995500e-01   p_joint 2.046667e-02

Joint ci ratio: 9.035246e-02	ci left: 2.500131e-02	ci right 2.738104e-02	k: 1832	n:70000
Cons ci ratio: 4.965552e-03	ci left: 8.967729e-01	ci right 9.012511e-01	k: 62932	n:70000
KS ci ratio: 1.206469e-01	ci left: 1.396007e-02	ci right 1.576619e-02	k: 1039	n:70000
RPS6KB1   70000 perm   15 sec   (4638 perm/sec)   p_kst 1.484286e-02   p_cons 8.990286e-01   p_joint 2.617143e-02

Joint ci ratio: 9.988738e-02	ci left: 1.794323e-02	ci right 1.984188e-02	k: 1510	n:80000
Cons ci ratio: 4.652586e-03	ci left: 8.966137e-01	ci right 9.008073e-01	k: 71898	n:80000
KS ci ratio: 1.118359e-01	ci left: 1.427846e-02	ci right 1.598196e-02	k: 1209	n:80000
RPS6KB1   80000 perm   18 sec   (4541 perm/sec)   p_kst 1.511250e-02   p_cons 8.987250e-01   p_joint 1.887500e-02

Joint ci ratio: 9.417126e-02	ci left: 1.799863e-02	ci right 1.978813e-02	k: 1699	n:90000
Cons ci ratio: 4.393239e-03	ci left: 8.964526e-01	ci right 9.004106e-01	k: 80860	n:90000
KS ci ratio: 1.050197e-01	ci left: 1.444324e-02	ci right 1.605489e-02	k: 1371	n:90000
RPS6KB1   90000 perm   20 sec   (4454 perm/sec)   p_kst 1.523333e-02   p_cons 8.984444e-01   p_joint 1.887778e-02

Joint ci ratio: 8.962667e-02	ci left: 1.792806e-02	ci right 1.962001e-02	k: 1876	n:100000
Cons ci ratio: 4.179518e-03	ci left: 8.960371e-01	ci right 8.997998e-01	k: 89793	n:100000
KS ci ratio: 9.934780e-02	ci left: 1.456784e-02	ci right 1.610046e-02	k: 1532	n:100000
RPS6KB1   100000 perm   23 sec   (4370 perm/sec)   p_kst 1.532000e-02   p_cons 8.979300e-01   p_joint 1.876000e-02

Outputting figure to mutsig2_images.part000000000150/RPS6KB1.3_1638_100000_0.01532_0.89793_0.01876.png
                gene_name: RPS6KB1
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 45 percent done.
RPUSD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.258607e-02	ci left: 3.477017e-01	ci right 3.665816e-01	k: 3571	n:10000
Cons ci ratio: 1.039952e-01	ci left: 1.178937e-01	ci right 1.309260e-01	k: 1243	n:10000
KS ci ratio: 1.922651e-02	ci left: 7.982126e-01	ci right 8.138088e-01	k: 8061	n:10000
RPUSD4   10000 perm   2 sec   (6188 perm/sec)   p_kst 8.061000e-01   p_cons 1.243000e-01   p_joint 3.571000e-01

Joint ci ratio: 4.704357e-02	ci left: 2.515995e-01	ci right 2.637711e-01	k: 5153	n:20000
Cons ci ratio: 7.430647e-02	ci left: 1.175927e-01	ci right 1.267175e-01	k: 2442	n:20000
KS ci ratio: 1.359053e-02	ci left: 8.006525e-01	ci right 8.116583e-01	k: 16124	n:20000
RPUSD4   20000 perm   4 sec   (5537 perm/sec)   p_kst 8.062000e-01   p_cons 1.221000e-01   p_joint 2.576500e-01

Outputting figure to mutsig2_images.part000000000150/RPUSD4.3_1162_20000_0.8062_0.1221_0.25765.png
                gene_name: RPUSD4
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 47 percent done.
RRAD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.977843e-02	ci left: 4.827546e-01	ci right 5.024497e-01	k: 4926	n:10000
Cons ci ratio: 3.115659e-02	ci left: 6.031711e-01	ci right 6.223632e-01	k: 6128	n:10000
KS ci ratio: 5.300083e-02	ci left: 3.441241e-01	ci right 3.629613e-01	k: 3535	n:10000
RRAD   10000 perm   2 sec   (6016 perm/sec)   p_kst 3.535000e-01   p_cons 6.128000e-01   p_joint 4.926000e-01

Outputting figure to mutsig2_images.part000000000150/RRAD.3_943_10000_0.3535_0.6128_0.4926.png
                gene_name: RRAD
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 50 percent done.
RRAGC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.399846e-03	ci left: 9.410771e-01	ci right 9.500611e-01	k: 9457	n:10000
Cons ci ratio: 3.147915e-02	ci left: 5.982508e-01	ci right 6.174863e-01	k: 6079	n:10000
KS ci ratio: 1.045991e-02	ci left: 9.285426e-01	ci right 9.384031e-01	k: 9336	n:10000
RRAGC   10000 perm   2 sec   (6077 perm/sec)   p_kst 9.336000e-01   p_cons 6.079000e-01   p_joint 9.457000e-01

Outputting figure to mutsig2_images.part000000000150/RRAGC.3_1228_10000_0.9336_0.6079_0.9457.png
                gene_name: RRAGC
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 53 percent done.
RREB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.715849e-01	ci left: 4.533038e-02	ci right 5.393440e-02	k: 495	n:10000
Cons ci ratio: 2.772291e-01	ci left: 1.688052e-02	ci right 2.240432e-02	k: 195	n:10000
KS ci ratio: 5.107490e-02	ci left: 3.611229e-01	ci right 3.801525e-01	k: 3706	n:10000
RREB1   10000 perm   2 sec   (4390 perm/sec)   p_kst 3.706000e-01   p_cons 1.950000e-02   p_joint 4.950000e-02

Joint ci ratio: 1.262282e-01	ci left: 4.308943e-02	ci right 4.894347e-02	k: 919	n:20000
Cons ci ratio: 1.906485e-01	ci left: 1.872403e-02	ci right 2.271702e-02	k: 413	n:20000
KS ci ratio: 3.625109e-02	ci left: 3.622074e-01	ci right 3.756308e-01	k: 7378	n:20000
RREB1   20000 perm   5 sec   (4133 perm/sec)   p_kst 3.689000e-01   p_cons 2.065000e-02   p_joint 4.595000e-02

Joint ci ratio: 9.840823e-02	ci left: 4.775609e-02	ci right 5.273147e-02	k: 1506	n:30000
Cons ci ratio: 1.535327e-01	ci left: 1.963185e-02	ci right 2.292844e-02	k: 637	n:30000
KS ci ratio: 2.936403e-02	ci left: 3.671579e-01	ci right 3.781334e-01	k: 11179	n:30000
RREB1   30000 perm   7 sec   (4026 perm/sec)   p_kst 3.726333e-01   p_cons 2.123333e-02   p_joint 5.020000e-02

Joint ci ratio: 1.073233e-01	ci left: 3.054025e-02	ci right 3.402808e-02	k: 1290	n:40000
Cons ci ratio: 1.379036e-01	ci left: 1.843305e-02	ci right 2.118728e-02	k: 791	n:40000
KS ci ratio: 2.546083e-02	ci left: 3.673351e-01	ci right 3.768335e-01	k: 14883	n:40000
RREB1   40000 perm   10 sec   (3855 perm/sec)   p_kst 3.720750e-01   p_cons 1.977500e-02   p_joint 3.225000e-02

Joint ci ratio: 9.352833e-02	ci left: 3.235040e-02	ci right 3.554401e-02	k: 1696	n:50000
Cons ci ratio: 1.231548e-01	ci left: 1.863562e-02	ci right 2.110057e-02	k: 992	n:50000
KS ci ratio: 2.284808e-02	ci left: 3.663045e-01	ci right 3.747906e-01	k: 18527	n:50000
RREB1   50000 perm   13 sec   (3814 perm/sec)   p_kst 3.705400e-01   p_cons 1.984000e-02   p_joint 3.392000e-02

Joint ci ratio: 8.530140e-02	ci left: 3.254781e-02	ci right 3.546416e-02	k: 2039	n:60000
Cons ci ratio: 1.127921e-01	ci left: 1.861920e-02	ci right 2.086093e-02	k: 1183	n:60000
KS ci ratio: 2.091978e-02	ci left: 3.652867e-01	ci right 3.730259e-01	k: 22149	n:60000
RREB1   60000 perm   16 sec   (3763 perm/sec)   p_kst 3.691500e-01   p_cons 1.971667e-02   p_joint 3.398333e-02

Joint ci ratio: 8.219249e-02	ci left: 3.017639e-02	ci right 3.277692e-02	k: 2202	n:70000
Cons ci ratio: 1.049432e-01	ci left: 1.851631e-02	ci right 2.058093e-02	k: 1367	n:70000
KS ci ratio: 1.935944e-02	ci left: 3.657802e-01	ci right 3.729450e-01	k: 25855	n:70000
RREB1   70000 perm   19 sec   (3713 perm/sec)   p_kst 3.693571e-01   p_cons 1.952857e-02   p_joint 3.145714e-02

Joint ci ratio: 6.788495e-02	ci left: 3.865255e-02	ci right 4.138094e-02	k: 3200	n:80000
Cons ci ratio: 9.840418e-02	ci left: 1.849204e-02	ci right 2.041803e-02	k: 1555	n:80000
KS ci ratio: 1.809002e-02	ci left: 3.665032e-01	ci right 3.732062e-01	k: 29588	n:80000
RREB1   80000 perm   22 sec   (3666 perm/sec)   p_kst 3.698500e-01   p_cons 1.943750e-02   p_joint 4.000000e-02

Outputting figure to mutsig2_images.part000000000150/RREB1.3_5269_80000_0.36985_0.019437_0.04.png
                gene_name: RREB1
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.041 

Current progress: 55 percent done.
RSAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.286912e-01	ci left: 7.941135e-02	ci right 9.043186e-02	k: 848	n:10000
Cons ci ratio: 7.190577e-02	ci left: 2.207943e-01	ci right 2.373638e-01	k: 2290	n:10000
KS ci ratio: 1.016747e-01	ci left: 1.227823e-01	ci right 1.360344e-01	k: 1293	n:10000
RSAD1   10000 perm   2 sec   (6195 perm/sec)   p_kst 1.293000e-01   p_cons 2.290000e-01   p_joint 8.480000e-02

Joint ci ratio: 9.826617e-02	ci left: 7.006718e-02	ci right 7.735734e-02	k: 1473	n:20000
Cons ci ratio: 5.083118e-02	ci left: 2.233399e-01	ci right 2.350389e-01	k: 4583	n:20000
KS ci ratio: 7.115585e-02	ci left: 1.270421e-01	ci right 1.364652e-01	k: 2634	n:20000
RSAD1   20000 perm   4 sec   (5506 perm/sec)   p_kst 1.317000e-01   p_cons 2.291500e-01   p_joint 7.365000e-02

Outputting figure to mutsig2_images.part000000000150/RSAD1.3_1365_20000_0.1317_0.22915_0.07365.png
                gene_name: RSAD1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.077 

Current progress: 58 percent done.
RPP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.135382e-01	ci left: 1.004217e-01	ci right 1.126086e-01	k: 1064	n:10000
Cons ci ratio: 9.011761e-02	ci left: 1.518829e-01	ci right 1.663162e-01	k: 1590	n:10000
KS ci ratio: 4.284655e-01	ci left: 6.526864e-03	ci right 1.016828e-02	k: 82	n:10000
RPP14   10000 perm   1 sec   (7412 perm/sec)   p_kst 8.200000e-03   p_cons 1.590000e-01   p_joint 1.064000e-01

Joint ci ratio: 1.441613e-01	ci left: 3.307475e-02	ci right 3.826138e-02	k: 712	n:20000
Cons ci ratio: 6.297228e-02	ci left: 1.571648e-01	ci right 1.674336e-01	k: 3245	n:20000
KS ci ratio: 3.076857e-01	ci left: 6.812321e-03	ci right 9.333850e-03	k: 160	n:20000
RPP14   20000 perm   3 sec   (6527 perm/sec)   p_kst 8.000000e-03   p_cons 1.622500e-01   p_joint 3.560000e-02

Joint ci ratio: 1.069847e-01	ci left: 4.053731e-02	ci right 4.515175e-02	k: 1284	n:30000
Cons ci ratio: 5.131630e-02	ci left: 1.586385e-01	ci right 1.670269e-01	k: 4884	n:30000
KS ci ratio: 2.494108e-01	ci left: 7.148163e-03	ci right 9.215453e-03	k: 244	n:30000
RPP14   30000 perm   5 sec   (6215 perm/sec)   p_kst 8.133333e-03   p_cons 1.628000e-01   p_joint 4.280000e-02

Joint ci ratio: 9.212873e-02	ci left: 4.130170e-02	ci right 4.531495e-02	k: 1731	n:40000
Cons ci ratio: 4.468055e-02	ci left: 1.577573e-01	ci right 1.649920e-01	k: 6454	n:40000
KS ci ratio: 2.142406e-01	ci left: 7.410577e-03	ci right 9.211899e-03	k: 331	n:40000
RPP14   40000 perm   7 sec   (6001 perm/sec)   p_kst 8.275000e-03   p_cons 1.613500e-01   p_joint 4.327500e-02

Joint ci ratio: 8.254220e-02	ci left: 4.137572e-02	ci right 4.495756e-02	k: 2157	n:50000
Cons ci ratio: 3.982460e-02	ci left: 1.590777e-01	ci right 1.655615e-01	k: 8115	n:50000
KS ci ratio: 1.918563e-01	ci left: 7.485326e-03	ci right 9.092548e-03	k: 413	n:50000
RPP14   50000 perm   9 sec   (5831 perm/sec)   p_kst 8.260000e-03   p_cons 1.623000e-01   p_joint 4.314000e-02

Joint ci ratio: 7.574260e-02	ci left: 4.111244e-02	ci right 4.436531e-02	k: 2563	n:60000
Cons ci ratio: 3.644907e-02	ci left: 1.586629e-01	ci right 1.645699e-01	k: 9696	n:60000
KS ci ratio: 1.789573e-01	ci left: 7.223099e-03	ci right 8.658443e-03	k: 475	n:60000
RPP14   60000 perm   11 sec   (5668 perm/sec)   p_kst 7.916667e-03   p_cons 1.616000e-01   p_joint 4.271667e-02

Joint ci ratio: 4.842015e-02	ci left: 8.353752e-02	ci right 8.769691e-02	k: 5992	n:70000
Cons ci ratio: 3.373671e-02	ci left: 1.589511e-01	ci right 1.644198e-01	k: 11317	n:70000
KS ci ratio: 1.651338e-01	ci left: 7.325982e-03	ci right 8.658144e-03	k: 558	n:70000
RPP14   70000 perm   13 sec   (5525 perm/sec)   p_kst 7.971429e-03   p_cons 1.616714e-01   p_joint 8.560000e-02

Joint ci ratio: 6.439109e-02	ci left: 4.284755e-02	ci right 4.571062e-02	k: 3541	n:80000
Cons ci ratio: 3.151403e-02	ci left: 1.595025e-01	ci right 1.646220e-01	k: 12964	n:80000
KS ci ratio: 1.544513e-01	ci left: 7.370292e-03	ci right 8.615786e-03	k: 638	n:80000
RPP14   80000 perm   15 sec   (5394 perm/sec)   p_kst 7.975000e-03   p_cons 1.620500e-01   p_joint 4.426250e-02

Joint ci ratio: 6.093892e-02	ci left: 4.261448e-02	ci right 4.530390e-02	k: 3955	n:90000
Cons ci ratio: 2.970762e-02	ci left: 1.596866e-01	ci right 1.645130e-01	k: 14588	n:90000
KS ci ratio: 1.458100e-01	ci left: 7.385503e-03	ci right 8.557655e-03	k: 716	n:90000
RPP14   90000 perm   17 sec   (5259 perm/sec)   p_kst 7.955556e-03   p_cons 1.620889e-01   p_joint 4.394444e-02

Joint ci ratio: 5.778809e-02	ci left: 4.271735e-02	ci right 4.526919e-02	k: 4398	n:100000
Cons ci ratio: 2.818002e-02	ci left: 1.598405e-01	ci right 1.644191e-01	k: 16212	n:100000
KS ci ratio: 1.380368e-01	ci left: 7.447511e-03	ci right 8.561310e-03	k: 799	n:100000
RPP14   100000 perm   19 sec   (5137 perm/sec)   p_kst 7.990000e-03   p_cons 1.621200e-01   p_joint 4.398000e-02

Joint ci ratio: 5.511608e-02	ci left: 4.275062e-02	ci right 4.518259e-02	k: 4835	n:110000
Cons ci ratio: 2.686888e-02	ci left: 1.599446e-01	ci right 1.643096e-01	k: 17833	n:110000
KS ci ratio: 1.305700e-01	ci left: 7.596350e-03	ci right 8.666191e-03	k: 893	n:110000
RPP14   110000 perm   22 sec   (5025 perm/sec)   p_kst 8.118182e-03   p_cons 1.621182e-01   p_joint 4.395455e-02

Joint ci ratio: 5.280440e-02	ci left: 4.274771e-02	ci right 4.507439e-02	k: 5268	n:120000
Cons ci ratio: 2.581713e-02	ci left: 1.590738e-01	ci right 1.632426e-01	k: 19338	n:120000
KS ci ratio: 1.252233e-01	ci left: 7.592527e-03	ci right 8.614792e-03	k: 971	n:120000
RPP14   120000 perm   24 sec   (4921 perm/sec)   p_kst 8.091667e-03   p_cons 1.611500e-01   p_joint 4.390000e-02

Joint ci ratio: 5.065438e-02	ci left: 4.292184e-02	ci right 4.516009e-02	k: 5724	n:130000
Cons ci ratio: 2.476245e-02	ci left: 1.596105e-01	ci right 1.636200e-01	k: 21009	n:130000
KS ci ratio: 1.196821e-01	ci left: 7.694532e-03	ci right 8.681441e-03	k: 1063	n:130000
RPP14   130000 perm   27 sec   (4823 perm/sec)   p_kst 8.176923e-03   p_cons 1.616077e-01   p_joint 4.403077e-02

Joint ci ratio: 3.983544e-02	ci left: 6.340272e-02	ci right 6.598677e-02	k: 9056	n:140000
Cons ci ratio: 2.385614e-02	ci left: 1.597464e-01	ci right 1.636104e-01	k: 22634	n:140000
KS ci ratio: 1.153715e-01	ci left: 7.706490e-03	ci right 8.656906e-03	k: 1144	n:140000
RPP14   140000 perm   30 sec   (4723 perm/sec)   p_kst 8.171429e-03   p_cons 1.616714e-01   p_joint 6.468571e-02

Joint ci ratio: 3.851002e-02	ci left: 6.336771e-02	ci right 6.586249e-02	k: 9691	n:150000
Cons ci ratio: 2.302219e-02	ci left: 1.601055e-01	ci right 1.638410e-01	k: 24295	n:150000
KS ci ratio: 1.117254e-01	ci left: 7.684997e-03	ci right 8.600835e-03	k: 1220	n:150000
RPP14   150000 perm   32 sec   (4632 perm/sec)   p_kst 8.133333e-03   p_cons 1.619667e-01   p_joint 6.460667e-02

Joint ci ratio: 3.732797e-02	ci left: 6.327637e-02	ci right 6.568944e-02	k: 10316	n:160000
Cons ci ratio: 2.231619e-02	ci left: 1.598617e-01	ci right 1.634756e-01	k: 25866	n:160000
KS ci ratio: 1.082783e-01	ci left: 7.684850e-03	ci right 8.570613e-03	k: 1299	n:160000
RPP14   160000 perm   35 sec   (4552 perm/sec)   p_kst 8.118750e-03   p_cons 1.616625e-01   p_joint 6.447500e-02

Joint ci ratio: 3.618843e-02	ci left: 6.339514e-02	ci right 6.573739e-02	k: 10975	n:170000
Cons ci ratio: 2.158933e-02	ci left: 1.606730e-01	ci right 1.641855e-01	k: 27612	n:170000
KS ci ratio: 1.050167e-01	ci left: 7.702291e-03	ci right 8.561669e-03	k: 1381	n:170000
RPP14   170000 perm   38 sec   (4473 perm/sec)   p_kst 8.123529e-03   p_cons 1.624235e-01   p_joint 6.455882e-02

Joint ci ratio: 4.323639e-02	ci left: 4.272720e-02	ci right 4.462086e-02	k: 7860	n:180000
Cons ci ratio: 2.095125e-02	ci left: 1.611082e-01	ci right 1.645249e-01	k: 29306	n:180000
KS ci ratio: 1.021739e-01	ci left: 7.696490e-03	ci right 8.530580e-03	k: 1459	n:180000
RPP14   180000 perm   41 sec   (4385 perm/sec)   p_kst 8.105556e-03   p_cons 1.628111e-01   p_joint 4.366667e-02

Joint ci ratio: 3.420893e-02	ci left: 6.353525e-02	ci right 6.575174e-02	k: 12281	n:190000
Cons ci ratio: 2.038150e-02	ci left: 1.612997e-01	ci right 1.646263e-01	k: 30962	n:190000
KS ci ratio: 1.001094e-01	ci left: 7.604325e-03	ci right 8.410795e-03	k: 1520	n:190000
RPP14   190000 perm   44 sec   (4310 perm/sec)   p_kst 8.000000e-03   p_cons 1.629579e-01   p_joint 6.463684e-02

Joint ci ratio: 3.769044e-02	ci left: 5.034212e-02	ci right 5.228091e-02	k: 10261	n:200000
Cons ci ratio: 1.987513e-02	ci left: 1.612093e-01	ci right 1.644505e-01	k: 32565	n:200000
KS ci ratio: 9.717930e-02	ci left: 7.677651e-03	ci right 8.466707e-03	k: 1613	n:200000
RPP14   200000 perm   47 sec   (4229 perm/sec)   p_kst 8.065000e-03   p_cons 1.628250e-01   p_joint 5.130500e-02

Outputting figure to mutsig2_images.part000000000150/RPP14.2_395_200000_0.008065_0.16282_0.051305.png
                gene_name: RPP14
               theta_stop: 0.097 
                    nperm: 200000 
                     p_ks: 0.0081 
        ci_ks_bounds_left: 0.0077 
       ci_ks_bounds_right: 0.0085 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.052 

Current progress: 61 percent done.
RPRD1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.749121e-02	ci left: 5.123546e-01	ci right 5.320325e-01	k: 5222	n:10000
Cons ci ratio: 1.032447e-02	ci left: 9.301971e-01	ci right 9.399476e-01	k: 9352	n:10000
KS ci ratio: 5.431310e-02	ci left: 3.330967e-01	ci right 3.517951e-01	k: 3424	n:10000
RPRD1B   10000 perm   2 sec   (6625 perm/sec)   p_kst 3.424000e-01   p_cons 9.352000e-01   p_joint 5.222000e-01

Outputting figure to mutsig2_images.part000000000150/RPRD1B.2_1009_10000_0.3424_0.9352_0.5222.png
                gene_name: RPRD1B
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 63 percent done.
RPS16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.745522e-02	ci left: 1.959420e-01	ci right 2.118309e-01	k: 2038	n:10000
Cons ci ratio: 6.996660e-02	ci left: 2.304707e-01	ci right 2.472817e-01	k: 2388	n:10000
KS ci ratio: 1.198041e-01	ci left: 9.087811e-02	ci right 1.025580e-01	k: 966	n:10000
RPS16   10000 perm   1 sec   (6985 perm/sec)   p_kst 9.660000e-02   p_cons 2.388000e-01   p_joint 2.038000e-01

Joint ci ratio: 1.760084e-01	ci left: 2.206683e-02	ci right 2.637302e-02	k: 483	n:20000
Cons ci ratio: 5.043875e-02	ci left: 2.260652e-01	ci right 2.378129e-01	k: 4638	n:20000
KS ci ratio: 8.486178e-02	ci left: 9.229449e-02	ci right 1.005233e-01	k: 1927	n:20000
RPS16   20000 perm   3 sec   (5753 perm/sec)   p_kst 9.635000e-02   p_cons 2.319000e-01   p_joint 2.415000e-02

Joint ci ratio: 1.436101e-01	ci left: 2.249062e-02	ci right 2.600234e-02	k: 726	n:30000
Cons ci ratio: 4.143328e-02	ci left: 2.250160e-01	ci right 2.345698e-01	k: 6893	n:30000
KS ci ratio: 6.841616e-02	ci left: 9.524878e-02	ci right 1.020292e-01	k: 2958	n:30000
RPS16   30000 perm   5 sec   (5584 perm/sec)   p_kst 9.860000e-02   p_cons 2.297667e-01   p_joint 2.420000e-02

Joint ci ratio: 1.258645e-01	ci left: 2.218301e-02	ci right 2.518668e-02	k: 946	n:40000
Cons ci ratio: 3.578126e-02	ci left: 2.266532e-01	ci right 2.349359e-01	k: 9231	n:40000
KS ci ratio: 5.998111e-02	ci left: 9.357389e-02	ci right 9.938484e-02	k: 3858	n:40000
RPS16   40000 perm   7 sec   (5447 perm/sec)   p_kst 9.645000e-02   p_cons 2.307750e-01   p_joint 2.365000e-02

Joint ci ratio: 1.130054e-01	ci left: 2.217047e-02	ci right 2.484525e-02	k: 1174	n:50000
Cons ci ratio: 3.198935e-02	ci left: 2.272517e-01	ci right 2.346595e-01	k: 11547	n:50000
KS ci ratio: 5.377695e-02	ci left: 9.347086e-02	ci right 9.865614e-02	k: 4802	n:50000
RPS16   50000 perm   9 sec   (5323 perm/sec)   p_kst 9.604000e-02   p_cons 2.309400e-01   p_joint 2.348000e-02

Joint ci ratio: 1.033850e-01	ci left: 2.218892e-02	ci right 2.462414e-02	k: 1403	n:60000
Cons ci ratio: 2.927993e-02	ci left: 2.266375e-01	ci right 2.333886e-01	k: 13800	n:60000
KS ci ratio: 4.908959e-02	ci left: 9.370352e-02	ci right 9.843564e-02	k: 5763	n:60000
RPS16   60000 perm   12 sec   (5205 perm/sec)   p_kst 9.605000e-02   p_cons 2.300000e-01   p_joint 2.338333e-02

Joint ci ratio: 9.592609e-02	ci left: 2.218117e-02	ci right 2.443001e-02	k: 1630	n:70000
Cons ci ratio: 2.713221e-02	ci left: 2.265738e-01	ci right 2.328200e-01	k: 16078	n:70000
KS ci ratio: 4.550309e-02	ci left: 9.367177e-02	ci right 9.804751e-02	k: 6709	n:70000
RPS16   70000 perm   14 sec   (5106 perm/sec)   p_kst 9.584286e-02   p_cons 2.296857e-01   p_joint 2.328571e-02

Outputting figure to mutsig2_images.part000000000150/RPS16.2_461_70000_0.095843_0.22969_0.023286.png
                gene_name: RPS16
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 66 percent done.
RPS18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.847238e-02	ci left: 6.451864e-01	ci right 6.639235e-01	k: 6546	n:10000
KS ci ratio: 3.838059e-03	ci left: 9.885089e-01	ci right 9.923974e-01	k: 9906	n:10000
RPS18   10000 perm   1 sec   (7253 perm/sec)   p_kst 9.906000e-01   p_cons 6.546000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000150/RPS18.2_483_10000_0.9906_0.6546_1.png
                gene_name: RPS18
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
RPS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.477798e-02	ci left: 5.497037e-01	ci right 5.692617e-01	k: 5595	n:10000
Cons ci ratio: 8.458342e-02	ci left: 1.692694e-01	ci right 1.843194e-01	k: 1767	n:10000
KS ci ratio: 4.572780e-02	ci left: 4.137890e-01	ci right 4.332556e-01	k: 4235	n:10000
RPS3   10000 perm   1 sec   (6978 perm/sec)   p_kst 4.235000e-01   p_cons 1.767000e-01   p_joint 5.595000e-01

Outputting figure to mutsig2_images.part000000000150/RPS3.2_756_10000_0.4235_0.1767_0.5595.png
                gene_name: RPS3
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 71 percent done.
RPS4X
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.703178e-03	ci left: 9.487722e-01	ci right 9.571614e-01	k: 9531	n:10000
Cons ci ratio: 5.054278e-02	ci left: 3.659962e-01	ci right 3.850763e-01	k: 3755	n:10000
KS ci ratio: 1.759120e-02	ci left: 8.249328e-01	ci right 8.396731e-01	k: 8324	n:10000
RPS4X   10000 perm   2 sec   (6465 perm/sec)   p_kst 8.324000e-01   p_cons 3.755000e-01   p_joint 9.531000e-01

Outputting figure to mutsig2_images.part000000000150/RPS4X.2_820_10000_0.8324_0.3755_0.9531.png
                gene_name: RPS4X
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 74 percent done.
RPS6KB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.223957e-02	ci left: 7.479640e-01	ci right 7.648864e-01	k: 7565	n:10000
Cons ci ratio: 1.306326e-02	ci left: 8.940557e-01	ci right 9.059101e-01	k: 9001	n:10000
KS ci ratio: 6.680851e-02	ci left: 2.474683e-01	ci right 2.646740e-01	k: 2560	n:10000
RPS6KB2   10000 perm   2 sec   (6351 perm/sec)   p_kst 2.560000e-01   p_cons 9.001000e-01   p_joint 7.565000e-01

Outputting figure to mutsig2_images.part000000000150/RPS6KB2.2_1509_10000_0.256_0.9001_0.7565.png
                gene_name: RPS6KB2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 76 percent done.
RPS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.702089e-02	ci left: 8.340910e-01	ci right 8.485096e-01	k: 8414	n:10000
KS ci ratio: 1.444354e-01	ci left: 6.362530e-02	ci right 7.362777e-02	k: 685	n:10000
RPS9   10000 perm   1 sec   (6985 perm/sec)   p_kst 6.850000e-02   p_cons 8.414000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.214746e-02	ci left: 8.337309e-01	ci right 8.439704e-01	k: 16778	n:20000
KS ci ratio: 1.029413e-01	ci left: 6.410982e-02	ci right 7.111653e-02	k: 1351	n:20000
RPS9   20000 perm   3 sec   (6161 perm/sec)   p_kst 6.755000e-02   p_cons 8.389000e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 9.914527e-03	ci left: 8.347916e-01	ci right 8.431426e-01	k: 25170	n:30000
KS ci ratio: 8.420777e-02	ci left: 6.452293e-02	ci right 7.022787e-02	k: 2020	n:30000
RPS9   30000 perm   5 sec   (5865 perm/sec)   p_kst 6.733333e-02   p_cons 8.390000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000150/RPS9.2_601_30000_0.067333_0.839_1.png
                gene_name: RPS9
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
RRAS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.042832e-02	ci left: 4.746606e-01	ci right 4.943484e-01	k: 4845	n:10000
Cons ci ratio: 5.377486e-02	ci left: 3.375666e-01	ci right 3.563226e-01	k: 3469	n:10000
KS ci ratio: 4.077787e-02	ci left: 4.703648e-01	ci right 4.900467e-01	k: 4802	n:10000
RRAS2   10000 perm   1 sec   (6916 perm/sec)   p_kst 4.802000e-01   p_cons 3.469000e-01   p_joint 4.845000e-01

Outputting figure to mutsig2_images.part000000000150/RRAS2.2_646_10000_0.4802_0.3469_0.4845.png
                gene_name: RRAS2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 82 percent done.
RRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.352291e-02	ci left: 4.380201e-01	ci right 4.576103e-01	k: 4478	n:10000
Cons ci ratio: 1.149320e-01	ci left: 9.818038e-02	ci right 1.102513e-01	k: 1041	n:10000
KS ci ratio: 5.069396e-02	ci left: 3.646037e-01	ci right 3.836696e-01	k: 3741	n:10000
RRM1   10000 perm   2 sec   (5480 perm/sec)   p_kst 3.741000e-01   p_cons 1.041000e-01   p_joint 4.478000e-01

Joint ci ratio: 3.048717e-02	ci left: 4.455841e-01	ci right 4.594297e-01	k: 9050	n:20000
Cons ci ratio: 8.324667e-02	ci left: 9.563031e-02	ci right 1.039865e-01	k: 1995	n:20000
KS ci ratio: 3.545118e-02	ci left: 3.726182e-01	ci right 3.861169e-01	k: 7587	n:20000
RRM1   20000 perm   4 sec   (5016 perm/sec)   p_kst 3.793500e-01   p_cons 9.975000e-02   p_joint 4.525000e-01

Outputting figure to mutsig2_images.part000000000150/RRM1.2_2455_20000_0.37935_0.09975_0.4525.png
                gene_name: RRM1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 84 percent done.
RRM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.820347e-02	ci left: 5.029509e-01	ci right 5.226417e-01	k: 5128	n:10000
Cons ci ratio: 2.979401e-02	ci left: 6.242697e-01	ci right 6.432523e-01	k: 6338	n:10000
KS ci ratio: 4.587792e-02	ci left: 4.121944e-01	ci right 4.316511e-01	k: 4219	n:10000
RRM2   10000 perm   2 sec   (6500 perm/sec)   p_kst 4.219000e-01   p_cons 6.338000e-01   p_joint 5.128000e-01

Outputting figure to mutsig2_images.part000000000150/RRM2.2_1390_10000_0.4219_0.6338_0.5128.png
                gene_name: RRM2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 87 percent done.
RRP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.172698e-02	ci left: 3.552563e-01	ci right 3.742225e-01	k: 3647	n:10000
Cons ci ratio: 5.576724e-02	ci left: 3.213802e-01	ci right 3.399186e-01	k: 3306	n:10000
KS ci ratio: 2.779532e-01	ci left: 1.678737e-02	ci right 2.229755e-02	k: 194	n:10000
RRP8   10000 perm   2 sec   (6564 perm/sec)   p_kst 1.940000e-02   p_cons 3.306000e-01   p_joint 3.647000e-01

Joint ci ratio: 3.492995e-02	ci left: 3.795938e-01	ci right 3.931393e-01	k: 7727	n:20000
Cons ci ratio: 3.876599e-02	ci left: 3.316920e-01	ci right 3.448551e-01	k: 6765	n:20000
KS ci ratio: 1.925569e-01	ci left: 1.834288e-02	ci right 2.229831e-02	k: 405	n:20000
RRP8   20000 perm   3 sec   (5787 perm/sec)   p_kst 2.025000e-02   p_cons 3.382500e-01   p_joint 3.863500e-01

Joint ci ratio: 3.361314e-02	ci left: 3.066595e-01	ci right 3.171770e-01	k: 9357	n:30000
Cons ci ratio: 3.187986e-02	ci left: 3.297249e-01	ci right 3.404403e-01	k: 10052	n:30000
KS ci ratio: 1.560504e-01	ci left: 1.899051e-02	ci right 2.223659e-02	k: 617	n:30000
RRP8   30000 perm   5 sec   (5544 perm/sec)   p_kst 2.056667e-02   p_cons 3.350667e-01   p_joint 3.119000e-01

Joint ci ratio: 3.475445e-02	ci left: 2.370885e-01	ci right 2.454991e-01	k: 9651	n:40000
Cons ci ratio: 2.758865e-02	ci left: 3.307728e-01	ci right 3.400511e-01	k: 13416	n:40000
KS ci ratio: 1.364174e-01	ci left: 1.884374e-02	ci right 2.162653e-02	k: 808	n:40000
RRP8   40000 perm   8 sec   (5321 perm/sec)   p_kst 2.020000e-02   p_cons 3.354000e-01   p_joint 2.412750e-01

Joint ci ratio: 5.781517e-02	ci left: 8.176046e-02	ci right 8.664794e-02	k: 4209	n:50000
Cons ci ratio: 2.467521e-02	ci left: 3.312813e-01	ci right 3.395779e-01	k: 16771	n:50000
KS ci ratio: 1.228396e-01	ci left: 1.873260e-02	ci right 2.120357e-02	k: 997	n:50000
RRP8   50000 perm   10 sec   (5140 perm/sec)   p_kst 1.994000e-02   p_cons 3.354200e-01   p_joint 8.418000e-02

Joint ci ratio: 2.417178e-02	ci left: 3.010515e-01	ci right 3.084341e-01	k: 18284	n:60000
Cons ci ratio: 2.257116e-02	ci left: 3.307411e-01	ci right 3.383082e-01	k: 20071	n:60000
KS ci ratio: 1.122613e-01	ci left: 1.879747e-02	ci right 2.104931e-02	k: 1194	n:60000
RRP8   60000 perm   12 sec   (5007 perm/sec)   p_kst 1.990000e-02   p_cons 3.345167e-01   p_joint 3.047333e-01

Joint ci ratio: 4.435339e-02	ci left: 9.815483e-02	ci right 1.026212e-01	k: 7026	n:70000
Cons ci ratio: 2.086625e-02	ci left: 3.316742e-01	ci right 3.386823e-01	k: 23462	n:70000
KS ci ratio: 1.035995e-01	ci left: 1.900352e-02	ci right 2.109368e-02	k: 1402	n:70000
RRP8   70000 perm   14 sec   (4892 perm/sec)   p_kst 2.002857e-02   p_cons 3.351714e-01   p_joint 1.003714e-01

Joint ci ratio: 2.505435e-02	ci left: 2.313559e-01	ci right 2.372384e-01	k: 18743	n:80000
Cons ci ratio: 1.953111e-02	ci left: 3.316169e-01	ci right 3.381701e-01	k: 26791	n:80000
KS ci ratio: 9.664530e-02	ci left: 1.917529e-02	ci right 2.113473e-02	k: 1611	n:80000
RRP8   80000 perm   17 sec   (4788 perm/sec)   p_kst 2.013750e-02   p_cons 3.348875e-01   p_joint 2.342875e-01

Outputting figure to mutsig2_images.part000000000150/RRP8.2_1399_80000_0.020137_0.33489_0.23429.png
                gene_name: RRP8
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 89 percent done.
RS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.533935e-02	ci left: 1.376631e-01	ci right 1.515446e-01	k: 1445	n:10000
KS ci ratio: 6.656394e-02	ci left: 2.488526e-01	ci right 2.660889e-01	k: 2574	n:10000
RS1   10000 perm   1 sec   (7207 perm/sec)   p_kst 2.574000e-01   p_cons 1.445000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000150/RS1.2_699_10000_0.2574_0.1445_1.png
                gene_name: RS1
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
RSAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.450053e-02	ci left: 1.398191e-01	ci right 1.537873e-01	k: 1467	n:10000
KS ci ratio: 4.604759e-02	ci left: 4.104006e-01	ci right 4.298460e-01	k: 4201	n:10000
RSAD2   10000 perm   1 sec   (6806 perm/sec)   p_kst 4.201000e-01   p_cons 1.467000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000150/RSAD2.2_1110_10000_0.4201_0.1467_1.png
                gene_name: RSAD2
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
RSBN1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.728889e-02	ci left: 5.150563e-01	ci right 5.347292e-01	k: 5249	n:10000
KS ci ratio: 4.721013e-02	ci left: 3.983455e-01	ci right 4.177081e-01	k: 4080	n:10000
RSBN1L   10000 perm   2 sec   (6047 perm/sec)   p_kst 4.080000e-01   p_cons 5.249000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000150/RSBN1L.2_2573_10000_0.408_0.5249_1.png
                gene_name: RSBN1L
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
RSC1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.478600e-01	ci left: 2.137124e-02	ci right 2.751008e-02	k: 243	n:10000
Cons ci ratio: 2.105447e-01	ci left: 2.996481e-02	ci right 3.711029e-02	k: 334	n:10000
KS ci ratio: 7.688723e-02	ci left: 1.983069e-01	ci right 2.142646e-01	k: 2062	n:10000
RSC1A1   10000 perm   2 sec   (6147 perm/sec)   p_kst 2.062000e-01   p_cons 3.340000e-02   p_joint 2.430000e-02

Joint ci ratio: 1.530674e-01	ci left: 2.931517e-02	ci right 3.422220e-02	k: 634	n:20000
Cons ci ratio: 1.491115e-01	ci left: 3.090466e-02	ci right 3.593219e-02	k: 667	n:20000
KS ci ratio: 5.252094e-02	ci left: 2.120960e-01	ci right 2.235861e-01	k: 4356	n:20000
RSC1A1   20000 perm   4 sec   (5425 perm/sec)   p_kst 2.178000e-01   p_cons 3.335000e-02   p_joint 3.170000e-02

Joint ci ratio: 5.420097e-02	ci left: 1.444277e-01	ci right 1.525071e-01	k: 4453	n:30000
Cons ci ratio: 1.214369e-01	ci left: 3.152481e-02	ci right 3.563283e-02	k: 1006	n:30000
KS ci ratio: 4.292742e-02	ci left: 2.128095e-01	ci right 2.221786e-01	k: 6524	n:30000
RSC1A1   30000 perm   6 sec   (5129 perm/sec)   p_kst 2.174667e-01   p_cons 3.353333e-02   p_joint 1.484333e-01

Joint ci ratio: 5.290762e-02	ci left: 1.174731e-01	ci right 1.238821e-01	k: 4826	n:40000
Cons ci ratio: 1.038414e-01	ci left: 3.261093e-02	ci right 3.620707e-02	k: 1375	n:40000
KS ci ratio: 3.716811e-02	ci left: 2.135149e-01	ci right 2.216261e-01	k: 8702	n:40000
RSC1A1   40000 perm   8 sec   (4956 perm/sec)   p_kst 2.175500e-01   p_cons 3.437500e-02   p_joint 1.206500e-01

Joint ci ratio: 5.390119e-02	ci left: 9.307570e-02	ci right 9.825135e-02	k: 4782	n:50000
Cons ci ratio: 9.321605e-02	ci left: 3.256543e-02	ci right 3.576895e-02	k: 1707	n:50000
KS ci ratio: 3.309408e-02	ci left: 2.154808e-01	ci right 2.227519e-01	k: 10955	n:50000
RSC1A1   50000 perm   10 sec   (4819 perm/sec)   p_kst 2.191000e-01   p_cons 3.414000e-02   p_joint 9.564000e-02

Outputting figure to mutsig2_images.part000000000150/RSC1A1.2_1858_50000_0.2191_0.03414_0.09564.png
                gene_name: RSC1A1
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.098 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000150
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 150 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1651>
Subject: Job 9894121: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1651>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000151> was used as the working directory.
Started at Sat Oct  6 00:27:40 2012
Results reported at Sat Oct  6 02:34:54 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000151.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000151.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 151  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000151.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   7711.84 sec.
    Max Memory :      3560 MB
    Max Swap   :      5924 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
151
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 151
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 151: processing genes 13524 - 13613
Calculating significance of each gene.
Using projection method.
13524	RSF1	4.760506e-01
13525	RSL1D1	6.195249e-01
13526	RSL24D1	4.680087e-01
13527	RSPH1	2.353150e-01
13528	RSPH10B	8.016969e-01
13529	RSPH10B2	1
13530	RSPH3	9.391543e-01
13531	RSPH4A	5.963961e-02
13532	RSPH6A	2.778654e-01
13533	RSPH9	4.329872e-01
13534	RSPO1	2.376980e-01
13535	RSPO2	1.151963e-03
13536	RSPO3	6.759667e-02
13537	RSPO4	4.260577e-01
13538	RSPRY1	2.363174e-01
13539	RSRC1	2.941648e-01
13540	RSRC2	4.875180e-01
13541	RSU1	1
13542	RTBDN	2.515580e-01
13543	RTCD1	6.157950e-01
13544	RTDR1	2.337065e-01
13545	RTEL1	1
13546	RTF1	9.363237e-01
13547	RTKN	8.826074e-01
13548	RTKN2	7.144597e-01
13549	RTN1	9.183946e-02
13550	RTN2	8.887210e-01
13551	RTN3	9.037818e-01
13552	RTN4	1.315015e-01
13553	RTN4IP1	7.440090e-01
13554	RTN4R	1
13555	RTN4RL1	7.286743e-01
13556	RTN4RL2	6.624523e-01
13557	RTP1	6.066753e-02
13558	RTP2	1
13559	RTP3	1
13560	RTP4	3.565756e-01
13561	RTTN	8.757706e-01
13562	RUFY1	7.985713e-01
13563	RUFY2	9.019460e-01
13564	RUFY3	2.648986e-02
13565	RUFY4	1.902458e-01
13566	RUNDC1	9.257406e-01
13567	RUNDC2A	3.619769e-01
13568	RUNDC3A	7.425675e-01
13569	RUNDC3B	8.563597e-02
13570	RUNX1	1.274417e-01
13571	RUNX1T1	7.525588e-03
13572	RUNX2	2.239516e-01
13573	RUNX3	5.626133e-01
13574	RUSC1	1
13575	RUSC2	8.068126e-01
13576	RUVBL1	4.982717e-03
13577	RUVBL2	9.655705e-01
13578	RWDD1	1.513886e-01
13579	RWDD2A	7.516610e-01
13580	RWDD2B	1.583814e-04
13581	RWDD3	7.020191e-01
13582	RWDD4A	2.457335e-01
13583	RXFP1	6.375242e-01
13584	RXFP2	1.525434e-03
13585	RXFP3	3.508935e-02
13586	RXFP4	5.157016e-01
13587	RXRA	9.427536e-01
13588	RXRB	2.360687e-01
13589	RXRG	4.436980e-01
13590	RYBP	6.679088e-01
13591	RYK	4.655748e-01
13592	RYR1	4.817422e-01
13593	RYR2	3.216232e-03
13594	RYR3	1.869433e-01
13595	S100A1	1
13596	S100A10	1
13597	S100A11	3.403071e-01
13598	S100A12	1
13599	S100A13	1.732288e-01
13600	S100A14	2.184947e-01
13601	S100A16	4.320066e-01
13602	S100A2	7.920657e-02
13603	S100A3	1
13604	S100A4	1
13605	S100A5	1
13606	S100A6	1
13607	S100A7	7.672178e-02
13608	S100A7A	1
13609	S100A7L2	4.028313e-01
13610	S100A8	1
13611	S100A9	9.171870e-02
13612	S100B	9.097059e-02
13613	S100G	1.047172e-01
Done

Running MutSig 2:
Scatter job 151: processing genes 13524 - 13613
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
RYR2
Processing conservation and coverage...
65% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.956981e-02	ci left: 6.277880e-01	ci right 6.467320e-01	k: 6373	n:10000
Cons ci ratio: 1.094871e-02	ci left: 9.224484e-01	ci right 9.327009e-01	k: 9277	n:10000
KS ci ratio: 3.516050e-02	ci left: 5.442931e-01	ci right 5.638753e-01	k: 5541	n:10000
RYR2   10000 perm   4 sec   (2288 perm/sec)   p_kst 5.541000e-01   p_cons 9.277000e-01   p_joint 6.373000e-01

Outputting figure to mutsig2_images.part000000000151/RYR2.59_15324_10000_0.5541_0.9277_0.6373.png
                gene_name: RYR2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 2 percent done.
RYR3
Processing conservation and coverage...
66% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.189691e-02	ci left: 4.568828e-01	ci right 4.765366e-01	k: 4667	n:10000
Cons ci ratio: 5.610910e-02	ci left: 3.187002e-01	ci right 3.372001e-01	k: 3279	n:10000
KS ci ratio: 3.691682e-02	ci left: 5.200602e-01	ci right 5.397224e-01	k: 5299	n:10000
RYR3   10000 perm   4 sec   (2546 perm/sec)   p_kst 5.299000e-01   p_cons 3.279000e-01   p_joint 4.667000e-01

Outputting figure to mutsig2_images.part000000000151/RYR3.42_15029_10000_0.5299_0.3279_0.4667.png
                gene_name: RYR3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 4 percent done.
RYR1
Processing conservation and coverage...
64% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.037172e-02	ci left: 4.753600e-01	ci right 4.950486e-01	k: 4852	n:10000
Cons ci ratio: 7.468054e-02	ci left: 2.078695e-01	ci right 2.240963e-01	k: 2159	n:10000
KS ci ratio: 2.732877e-02	ci left: 6.636054e-01	ci right 6.820938e-01	k: 6729	n:10000
RYR1   10000 perm   4 sec   (2812 perm/sec)   p_kst 6.729000e-01   p_cons 2.159000e-01   p_joint 4.852000e-01

Outputting figure to mutsig2_images.part000000000151/RYR1.25_15541_10000_0.6729_0.2159_0.4852.png
                gene_name: RYR1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 6 percent done.
RTN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.476548e-02	ci left: 1.391331e-01	ci right 1.530738e-01	k: 1460	n:10000
Cons ci ratio: 9.069448e-02	ci left: 1.502147e-01	ci right 1.645855e-01	k: 1573	n:10000
KS ci ratio: 6.570466e-02	ci left: 2.537975e-01	ci right 2.711410e-01	k: 2624	n:10000
RTN4   10000 perm   2 sec   (4489 perm/sec)   p_kst 2.624000e-01   p_cons 1.573000e-01   p_joint 1.460000e-01

Outputting figure to mutsig2_images.part000000000151/RTN4.10_3653_10000_0.2624_0.1573_0.146.png
                gene_name: RTN4
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 8 percent done.
RUNX1T1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.547462e-02	ci left: 5.398854e-01	ci right 5.594856e-01	k: 5497	n:10000
Cons ci ratio: 7.984796e-02	ci left: 1.863882e-01	ci right 2.019904e-01	k: 1941	n:10000
KS ci ratio: 3.434269e-02	ci left: 5.559172e-01	ci right 5.754445e-01	k: 5657	n:10000
RUNX1T1   10000 perm   2 sec   (5145 perm/sec)   p_kst 5.657000e-01   p_cons 1.941000e-01   p_joint 5.497000e-01

Outputting figure to mutsig2_images.part000000000151/RUNX1T1.10_1870_10000_0.5657_0.1941_0.5497.png
                gene_name: RUNX1T1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 10 percent done.
RXFP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.613838e-02	ci left: 6.830481e-01	ci right 7.012398e-01	k: 6922	n:10000
Cons ci ratio: 5.780619e-02	ci left: 3.058014e-01	ci right 3.241065e-01	k: 3149	n:10000
KS ci ratio: 2.428697e-02	ci left: 7.137110e-01	ci right 7.313592e-01	k: 7226	n:10000
RXFP2   10000 perm   2 sec   (5090 perm/sec)   p_kst 7.226000e-01   p_cons 3.149000e-01   p_joint 6.922000e-01

Outputting figure to mutsig2_images.part000000000151/RXFP2.10_2337_10000_0.7226_0.3149_0.6922.png
                gene_name: RXFP2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 12 percent done.
RSPH4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.752610e-02	ci left: 3.078845e-01	ci right 3.262222e-01	k: 3170	n:10000
Cons ci ratio: 9.480348e-02	ci left: 1.390351e-01	ci right 1.529718e-01	k: 1459	n:10000
KS ci ratio: 2.650079e-02	ci left: 6.771026e-01	ci right 6.953888e-01	k: 6863	n:10000
RSPH4A   10000 perm   2 sec   (4782 perm/sec)   p_kst 6.863000e-01   p_cons 1.459000e-01   p_joint 3.170000e-01

Outputting figure to mutsig2_images.part000000000151/RSPH4A.9_2175_10000_0.6863_0.1459_0.317.png
                gene_name: RSPH4A
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 13 percent done.
RWDD2B
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.827232e-02	ci left: 5.020507e-01	ci right 5.217424e-01	k: 5119	n:10000
Cons ci ratio: 4.645628e-02	ci left: 4.061158e-01	ci right 4.255332e-01	k: 4158	n:10000
KS ci ratio: 5.363278e-02	ci left: 3.387587e-01	ci right 3.575298e-01	k: 3481	n:10000
RWDD2B   10000 perm   2 sec   (5882 perm/sec)   p_kst 3.481000e-01   p_cons 4.158000e-01   p_joint 5.119000e-01

Outputting figure to mutsig2_images.part000000000151/RWDD2B.8_980_10000_0.3481_0.4158_0.5119.png
                gene_name: RWDD2B
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 15 percent done.
RUVBL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.798921e-02	ci left: 6.529346e-01	ci right 6.715708e-01	k: 6623	n:10000
Cons ci ratio: 2.280068e-02	ci left: 7.385604e-01	ci right 7.556954e-01	k: 7472	n:10000
KS ci ratio: 4.098259e-02	ci left: 4.678676e-01	ci right 4.875454e-01	k: 4777	n:10000
RUVBL1   10000 perm   2 sec   (6016 perm/sec)   p_kst 4.777000e-01   p_cons 7.472000e-01   p_joint 6.623000e-01

Outputting figure to mutsig2_images.part000000000151/RUVBL1.8_1415_10000_0.4777_0.7472_0.6623.png
                gene_name: RUVBL1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 17 percent done.
RSF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.072783e-02	ci left: 7.732695e-01	ci right 7.895662e-01	k: 7815	n:10000
Cons ci ratio: 4.103189e-02	ci left: 4.672683e-01	ci right 4.869450e-01	k: 4771	n:10000
KS ci ratio: 2.788293e-02	ci left: 6.546456e-01	ci right 6.732588e-01	k: 6640	n:10000
RSF1   10000 perm   2 sec   (4222 perm/sec)   p_kst 6.640000e-01   p_cons 4.771000e-01   p_joint 7.815000e-01

Outputting figure to mutsig2_images.part000000000151/RSF1.7_4390_10000_0.664_0.4771_0.7815.png
                gene_name: RSF1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 19 percent done.
RTN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.052124e-02	ci left: 3.661952e-01	ci right 3.852773e-01	k: 3757	n:10000
Cons ci ratio: 1.752814e-02	ci left: 8.259500e-01	ci right 8.406553e-01	k: 8334	n:10000
KS ci ratio: 6.651176e-02	ci left: 2.491493e-01	ci right 2.663920e-01	k: 2577	n:10000
RTN1   10000 perm   2 sec   (5184 perm/sec)   p_kst 2.577000e-01   p_cons 8.334000e-01   p_joint 3.757000e-01

Outputting figure to mutsig2_images.part000000000151/RTN1.7_2432_10000_0.2577_0.8334_0.3757.png
                gene_name: RTN1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 21 percent done.
RTTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.116315e-02	ci left: 6.030707e-01	ci right 6.222637e-01	k: 6127	n:10000
Cons ci ratio: 8.525785e-02	ci left: 1.670085e-01	ci right 1.819816e-01	k: 1744	n:10000
KS ci ratio: 1.323674e-02	ci left: 8.915942e-01	ci right 9.035731e-01	k: 8977	n:10000
RTTN   10000 perm   3 sec   (3856 perm/sec)   p_kst 8.977000e-01   p_cons 1.744000e-01   p_joint 6.127000e-01

Outputting figure to mutsig2_images.part000000000151/RTTN.7_6877_10000_0.8977_0.1744_0.6127.png
                gene_name: RTTN
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 23 percent done.
RUFY3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.702838e-02	ci left: 1.977156e-01	ci right 2.136562e-01	k: 2056	n:10000
Cons ci ratio: 1.432065e-01	ci left: 6.468834e-02	ci right 7.476406e-02	k: 696	n:10000
KS ci ratio: 2.845350e-02	ci left: 6.454882e-01	ci right 6.642215e-01	k: 6549	n:10000
RUFY3   10000 perm   2 sec   (4910 perm/sec)   p_kst 6.549000e-01   p_cons 6.960000e-02   p_joint 2.056000e-01

Joint ci ratio: 5.547115e-02	ci left: 1.942279e-01	ci right 2.053595e-01	k: 3995	n:20000
Cons ci ratio: 1.031050e-01	ci left: 6.391463e-02	ci right 7.091178e-02	k: 1347	n:20000
KS ci ratio: 2.117075e-02	ci left: 6.248209e-01	ci right 6.382409e-01	k: 12631	n:20000
RUFY3   20000 perm   4 sec   (4507 perm/sec)   p_kst 6.315500e-01   p_cons 6.735000e-02   p_joint 1.997500e-01

Joint ci ratio: 4.728809e-02	ci left: 1.819411e-01	ci right 1.907864e-01	k: 5590	n:30000
Cons ci ratio: 8.350114e-02	ci left: 6.556875e-02	ci right 7.131516e-02	k: 2052	n:30000
KS ci ratio: 1.723601e-02	ci left: 6.274163e-01	ci right 6.383580e-01	k: 18987	n:30000
RUFY3   30000 perm   7 sec   (4341 perm/sec)   p_kst 6.329000e-01   p_cons 6.840000e-02   p_joint 1.863333e-01

Outputting figure to mutsig2_images.part000000000151/RUFY3.7_2378_30000_0.6329_0.0684_0.18633.png
                gene_name: RUFY3
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 25 percent done.
RUNDC3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.206259e-01	ci left: 2.721699e-02	ci right 3.406005e-02	k: 305	n:10000
Cons ci ratio: 1.645486e-01	ci left: 4.926618e-02	ci right 5.819605e-02	k: 536	n:10000
KS ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
RUNDC3B   10000 perm   2 sec   (5037 perm/sec)   p_kst 1.090000e-02   p_cons 5.360000e-02   p_joint 3.050000e-02

Joint ci ratio: 1.878865e-01	ci left: 1.929613e-02	ci right 2.334471e-02	k: 425	n:20000
Cons ci ratio: 1.031460e-01	ci left: 6.386583e-02	ci right 7.086059e-02	k: 1346	n:20000
KS ci ratio: 2.703794e-01	ci left: 8.993904e-03	ci right 1.185112e-02	k: 207	n:20000
RUNDC3B   20000 perm   4 sec   (4660 perm/sec)   p_kst 1.035000e-02   p_cons 6.730000e-02   p_joint 2.125000e-02

Joint ci ratio: 1.397197e-01	ci left: 2.377778e-02	ci right 2.738156e-02	k: 766	n:30000
Cons ci ratio: 9.360105e-02	ci left: 5.264230e-02	ci right 5.784425e-02	k: 1656	n:30000
KS ci ratio: 2.207657e-01	ci left: 9.251451e-03	ci right 1.157816e-02	k: 311	n:30000
RUNDC3B   30000 perm   7 sec   (4500 perm/sec)   p_kst 1.036667e-02   p_cons 5.520000e-02   p_joint 2.553333e-02

Joint ci ratio: 9.936577e-02	ci left: 3.558613e-02	ci right 3.933140e-02	k: 1497	n:40000
Cons ci ratio: 8.066262e-02	ci left: 5.349683e-02	ci right 5.801793e-02	k: 2229	n:40000
KS ci ratio: 1.942806e-01	ci left: 9.095716e-03	ci right 1.107638e-02	k: 402	n:40000
RUNDC3B   40000 perm   9 sec   (4383 perm/sec)   p_kst 1.005000e-02   p_cons 5.572500e-02   p_joint 3.742500e-02

Joint ci ratio: 9.623211e-02	ci left: 3.057220e-02	ci right 3.368243e-02	k: 1605	n:50000
Cons ci ratio: 7.222249e-02	ci left: 5.362697e-02	ci right 5.766481e-02	k: 2781	n:50000
KS ci ratio: 1.756737e-01	ci left: 8.993356e-03	ci right 1.074425e-02	k: 492	n:50000
RUNDC3B   50000 perm   12 sec   (4309 perm/sec)   p_kst 9.840000e-03   p_cons 5.562000e-02   p_joint 3.210000e-02

Joint ci ratio: 1.276105e-01	ci left: 1.449444e-02	ci right 1.648616e-02	k: 928	n:60000
Cons ci ratio: 6.144881e-02	ci left: 6.156156e-02	ci right 6.548079e-02	k: 3810	n:60000
KS ci ratio: 1.636978e-01	ci left: 8.691314e-03	ci right 1.025668e-02	k: 567	n:60000
RUNDC3B   60000 perm   14 sec   (4175 perm/sec)   p_kst 9.450000e-03   p_cons 6.350000e-02   p_joint 1.546667e-02

Joint ci ratio: 1.393027e-01	ci left: 1.040600e-02	ci right 1.197777e-02	k: 782	n:70000
Cons ci ratio: 5.700134e-02	ci left: 6.147894e-02	ci right 6.510022e-02	k: 4429	n:70000
KS ci ratio: 1.519800e-01	ci left: 8.698405e-03	ci right 1.014270e-02	k: 658	n:70000
RUNDC3B   70000 perm   17 sec   (4094 perm/sec)   p_kst 9.400000e-03   p_cons 6.327143e-02   p_joint 1.117143e-02

Joint ci ratio: 1.292766e-01	ci left: 1.062747e-02	ci right 1.210829e-02	k: 908	n:80000
Cons ci ratio: 5.319584e-02	ci left: 6.186915e-02	ci right 6.526259e-02	k: 5084	n:80000
KS ci ratio: 1.400348e-01	ci left: 9.020350e-03	ci right 1.039056e-02	k: 775	n:80000
RUNDC3B   80000 perm   20 sec   (4020 perm/sec)   p_kst 9.687500e-03   p_cons 6.355000e-02   p_joint 1.135000e-02

Joint ci ratio: 1.186189e-01	ci left: 1.127727e-02	ci right 1.271000e-02	k: 1078	n:90000
Cons ci ratio: 5.020335e-02	ci left: 6.184946e-02	ci right 6.504542e-02	k: 5709	n:90000
KS ci ratio: 1.315704e-01	ci left: 9.123708e-03	ci right 1.041929e-02	k: 878	n:90000
RUNDC3B   90000 perm   23 sec   (3956 perm/sec)   p_kst 9.755556e-03   p_cons 6.343333e-02   p_joint 1.197778e-02

Joint ci ratio: 1.164740e-01	ci left: 1.054725e-02	ci right 1.186133e-02	k: 1119	n:100000
Cons ci ratio: 4.768107e-02	ci left: 6.179847e-02	ci right 6.482692e-02	k: 6330	n:100000
KS ci ratio: 1.247972e-01	ci left: 9.159935e-03	ci right 1.038875e-02	k: 976	n:100000
RUNDC3B   100000 perm   26 sec   (3894 perm/sec)   p_kst 9.760000e-03   p_cons 6.330000e-02   p_joint 1.119000e-02

Joint ci ratio: 1.139906e-01	ci left: 1.002970e-02	ci right 1.125085e-02	k: 1169	n:110000
Cons ci ratio: 4.557788e-02	ci left: 6.157120e-02	ci right 6.445190e-02	k: 6930	n:110000
KS ci ratio: 1.189169e-01	ci left: 9.199799e-03	ci right 1.037172e-02	k: 1075	n:110000
RUNDC3B   110000 perm   29 sec   (3833 perm/sec)   p_kst 9.772727e-03   p_cons 6.300000e-02   p_joint 1.062727e-02

Joint ci ratio: 1.102059e-01	ci left: 9.858016e-03	ci right 1.101583e-02	k: 1251	n:120000
Cons ci ratio: 4.375215e-02	ci left: 6.132656e-02	ci right 6.407796e-02	k: 7523	n:120000
KS ci ratio: 1.136988e-01	ci left: 9.250349e-03	ci right 1.037353e-02	k: 1176	n:120000
RUNDC3B   120000 perm   32 sec   (3781 perm/sec)   p_kst 9.800000e-03   p_cons 6.269167e-02   p_joint 1.042500e-02

Joint ci ratio: 1.070992e-01	ci left: 9.653414e-03	ci right 1.075321e-02	k: 1325	n:130000
Cons ci ratio: 4.210189e-02	ci left: 6.119770e-02	ci right 6.383724e-02	k: 8126	n:130000
KS ci ratio: 1.093719e-01	ci left: 9.249169e-03	ci right 1.032671e-02	k: 1271	n:130000
RUNDC3B   130000 perm   35 sec   (3710 perm/sec)   p_kst 9.776923e-03   p_cons 6.250769e-02   p_joint 1.019231e-02

Joint ci ratio: 1.003324e-01	ci left: 1.024426e-02	ci right 1.133329e-02	k: 1509	n:140000
Cons ci ratio: 4.055102e-02	ci left: 6.130120e-02	ci right 6.384552e-02	k: 8759	n:140000
KS ci ratio: 1.056604e-01	ci left: 9.221029e-03	ci right 1.025657e-02	k: 1362	n:140000
RUNDC3B   140000 perm   38 sec   (3659 perm/sec)   p_kst 9.728571e-03   p_cons 6.256429e-02   p_joint 1.077857e-02

Joint ci ratio: 8.152327e-02	ci left: 1.456077e-02	ci right 1.580474e-02	k: 2276	n:150000
Cons ci ratio: 4.059196e-02	ci left: 5.734397e-02	ci right 5.972647e-02	k: 8779	n:150000
KS ci ratio: 1.019142e-01	ci left: 9.268655e-03	ci right 1.027043e-02	k: 1464	n:150000
RUNDC3B   150000 perm   42 sec   (3596 perm/sec)   p_kst 9.760000e-03   p_cons 5.852667e-02   p_joint 1.517333e-02

Joint ci ratio: 7.938046e-02	ci left: 1.441621e-02	ci right 1.561396e-02	k: 2401	n:160000
Cons ci ratio: 3.924813e-02	ci left: 5.753452e-02	ci right 5.984401e-02	k: 9389	n:160000
KS ci ratio: 9.873118e-02	ci left: 9.274312e-03	ci right 1.024358e-02	k: 1560	n:160000
RUNDC3B   160000 perm   45 sec   (3537 perm/sec)   p_kst 9.750000e-03   p_cons 5.868125e-02   p_joint 1.500625e-02

Outputting figure to mutsig2_images.part000000000151/RUNDC3B.7_1470_160000_0.00975_0.058681_0.015006.png
                gene_name: RUNDC3B
               theta_stop: 0.099 
                    nperm: 160000 
                     p_ks: 0.0097 
        ci_ks_bounds_left: 0.0093 
       ci_ks_bounds_right: 0.010 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.016 

Current progress: 27 percent done.
RSPO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.924117e-02	ci left: 4.895516e-01	ci right 5.092488e-01	k: 4994	n:10000
Cons ci ratio: 1.291762e-02	ci left: 8.961077e-01	ci right 9.078569e-01	k: 9021	n:10000
KS ci ratio: 6.017928e-02	ci left: 2.888472e-01	ci right 3.068707e-01	k: 2978	n:10000
RSPO2   10000 perm   2 sec   (6257 perm/sec)   p_kst 2.978000e-01   p_cons 9.021000e-01   p_joint 4.994000e-01

Outputting figure to mutsig2_images.part000000000151/RSPO2.6_752_10000_0.2978_0.9021_0.4994.png
                gene_name: RSPO2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 29 percent done.
RXFP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.209943e-02	ci left: 4.544868e-01	ci right 4.741340e-01	k: 4643	n:10000
Cons ci ratio: 3.325128e-02	ci left: 5.717587e-01	ci right 5.911938e-01	k: 5815	n:10000
KS ci ratio: 6.210389e-02	ci left: 2.759680e-01	ci right 2.937575e-01	k: 2848	n:10000
RXFP3   10000 perm   2 sec   (5930 perm/sec)   p_kst 2.848000e-01   p_cons 5.815000e-01   p_joint 4.643000e-01

Outputting figure to mutsig2_images.part000000000151/RXFP3.6_1414_10000_0.2848_0.5815_0.4643.png
                gene_name: RXFP3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 31 percent done.
RSPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.033134e-02	ci left: 4.758596e-01	ci right 4.955488e-01	k: 4857	n:10000
Cons ci ratio: 6.814967e-02	ci left: 2.400544e-01	ci right 2.570923e-01	k: 2485	n:10000
KS ci ratio: 4.384994e-02	ci left: 4.343291e-01	ci right 4.539035e-01	k: 4441	n:10000
RSPH1   10000 perm   2 sec   (6415 perm/sec)   p_kst 4.441000e-01   p_cons 2.485000e-01   p_joint 4.857000e-01

Outputting figure to mutsig2_images.part000000000151/RSPH1.5_966_10000_0.4441_0.2485_0.4857.png
                gene_name: RSPH1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 33 percent done.
RSPH6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.559696e-02	ci left: 4.151844e-01	ci right 4.346594e-01	k: 4249	n:10000
Cons ci ratio: 9.180449e-02	ci left: 1.470751e-01	ci right 1.613269e-01	k: 1541	n:10000
KS ci ratio: 3.449668e-02	ci left: 5.537122e-01	ci right 5.732508e-01	k: 5635	n:10000
RSPH6A   10000 perm   2 sec   (5620 perm/sec)   p_kst 5.635000e-01   p_cons 1.541000e-01   p_joint 4.249000e-01

Outputting figure to mutsig2_images.part000000000151/RSPH6A.5_2178_10000_0.5635_0.1541_0.4249.png
                gene_name: RSPH6A
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 35 percent done.
RTP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.967418e-02	ci left: 7.908060e-01	ci right 8.066196e-01	k: 7988	n:10000
Cons ci ratio: 4.494084e-02	ci left: 4.222622e-01	ci right 4.417774e-01	k: 4320	n:10000
KS ci ratio: 2.331969e-02	ci left: 7.298693e-01	ci right 7.471916e-01	k: 7386	n:10000
RTP1   10000 perm   2 sec   (6119 perm/sec)   p_kst 7.386000e-01   p_cons 4.320000e-01   p_joint 7.988000e-01

Outputting figure to mutsig2_images.part000000000151/RTP1.5_800_10000_0.7386_0.432_0.7988.png
                gene_name: RTP1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 37 percent done.
RUNX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
Cons ci ratio: 9.825754e-02	ci left: 1.305129e-01	ci right 1.440991e-01	k: 1372	n:10000
KS ci ratio: 1.128281e-01	ci left: 1.015915e-01	ci right 1.138381e-01	k: 1076	n:10000
RUNX2   10000 perm   2 sec   (5779 perm/sec)   p_kst 1.076000e-01   p_cons 1.372000e-01   p_joint 6.190000e-02

Joint ci ratio: 1.155622e-01	ci left: 5.124802e-02	ci right 5.758231e-02	k: 1087	n:20000
Cons ci ratio: 6.711805e-02	ci left: 1.407879e-01	ci right 1.506153e-01	k: 2913	n:20000
KS ci ratio: 8.068851e-02	ci left: 1.012751e-01	ci right 1.098399e-01	k: 2110	n:20000
RUNX2   20000 perm   4 sec   (5192 perm/sec)   p_kst 1.055000e-01   p_cons 1.456500e-01   p_joint 5.435000e-02

Joint ci ratio: 6.325014e-02	ci left: 1.098986e-01	ci right 1.171098e-01	k: 3404	n:30000
Cons ci ratio: 5.437311e-02	ci left: 1.436368e-01	ci right 1.516982e-01	k: 4429	n:30000
KS ci ratio: 6.583003e-02	ci left: 1.022097e-01	ci right 1.092002e-01	k: 3170	n:30000
RUNX2   30000 perm   6 sec   (4949 perm/sec)   p_kst 1.056667e-01   p_cons 1.476333e-01   p_joint 1.134667e-01

Outputting figure to mutsig2_images.part000000000151/RUNX2.5_1614_30000_0.10567_0.14763_0.11347.png
                gene_name: RUNX2
               theta_stop: 0.066 
                    nperm: 30000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 38 percent done.
RUSC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.219358e-02	ci left: 1.459962e-01	ci right 1.602065e-01	k: 1530	n:10000
Cons ci ratio: 2.118569e-01	ci left: 2.958536e-02	ci right 3.669001e-02	k: 330	n:10000
KS ci ratio: 3.992989e-02	ci left: 4.808558e-01	ci right 5.005496e-01	k: 4907	n:10000
RUSC2   10000 perm   2 sec   (4759 perm/sec)   p_kst 4.907000e-01   p_cons 3.300000e-02   p_joint 1.530000e-01

Joint ci ratio: 8.951065e-02	ci left: 8.357009e-02	ci right 9.145032e-02	k: 1749	n:20000
Cons ci ratio: 1.585670e-01	ci left: 2.729474e-02	ci right 3.204331e-02	k: 592	n:20000
KS ci ratio: 2.850937e-02	ci left: 4.789507e-01	ci right 4.928534e-01	k: 9718	n:20000
RUSC2   20000 perm   5 sec   (4336 perm/sec)   p_kst 4.859000e-01   p_cons 2.960000e-02   p_joint 8.745000e-02

Joint ci ratio: 7.782843e-02	ci left: 7.492424e-02	ci right 8.102446e-02	k: 2338	n:30000
Cons ci ratio: 1.275258e-01	ci left: 2.858305e-02	ci right 3.250857e-02	k: 915	n:30000
KS ci ratio: 2.318697e-02	ci left: 4.821951e-01	ci right 4.935405e-01	k: 14636	n:30000
RUSC2   30000 perm   7 sec   (4170 perm/sec)   p_kst 4.878667e-01   p_cons 3.050000e-02   p_joint 7.793333e-02

Joint ci ratio: 5.529291e-02	ci left: 1.085301e-01	ci right 1.147264e-01	k: 4464	n:40000
Cons ci ratio: 1.091720e-01	ci left: 2.951782e-02	ci right 3.295067e-02	k: 1248	n:40000
KS ci ratio: 2.018620e-02	ci left: 4.803409e-01	ci right 4.901612e-01	k: 19410	n:40000
RUSC2   40000 perm   10 sec   (4063 perm/sec)   p_kst 4.852500e-01   p_cons 3.120000e-02   p_joint 1.116000e-01

Joint ci ratio: 5.702021e-02	ci left: 8.389222e-02	ci right 8.883593e-02	k: 4317	n:50000
Cons ci ratio: 9.293474e-02	ci left: 3.276093e-02	ci right 3.597343e-02	k: 1717	n:50000
KS ci ratio: 1.808525e-02	ci left: 4.800305e-01	ci right 4.888113e-01	k: 24221	n:50000
RUSC2   50000 perm   13 sec   (3976 perm/sec)   p_kst 4.844200e-01   p_cons 3.434000e-02   p_joint 8.634000e-02

Outputting figure to mutsig2_images.part000000000151/RUSC2.5_4595_50000_0.48442_0.03434_0.08634.png
                gene_name: RUSC2
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.089 

Current progress: 40 percent done.
RSPH9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.760319e-02	ci left: 3.943616e-01	ci right 4.136943e-01	k: 4040	n:10000
Cons ci ratio: 6.083299e-02	ci left: 2.843880e-01	ci right 3.023325e-01	k: 2933	n:10000
KS ci ratio: 4.979688e-02	ci left: 3.729600e-01	ci right 3.921085e-01	k: 3825	n:10000
RSPH9   10000 perm   2 sec   (6467 perm/sec)   p_kst 3.825000e-01   p_cons 2.933000e-01   p_joint 4.040000e-01

Outputting figure to mutsig2_images.part000000000151/RSPH9.4_851_10000_0.3825_0.2933_0.404.png
                gene_name: RSPH9
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 42 percent done.
RSPRY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.202230e-02	ci left: 7.516055e-01	ci right 7.684428e-01	k: 7601	n:10000
Cons ci ratio: 4.855515e-02	ci left: 3.849027e-01	ci right 4.041588e-01	k: 3945	n:10000
KS ci ratio: 3.641604e-02	ci left: 5.268671e-01	ci right 5.465115e-01	k: 5367	n:10000
RSPRY1   10000 perm   2 sec   (5577 perm/sec)   p_kst 5.367000e-01   p_cons 3.945000e-01   p_joint 7.601000e-01

Outputting figure to mutsig2_images.part000000000151/RSPRY1.4_1787_10000_0.5367_0.3945_0.7601.png
                gene_name: RSPRY1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 44 percent done.
RTDR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.201491e-02	ci left: 4.554851e-01	ci right 4.751351e-01	k: 4653	n:10000
KS ci ratio: 5.512284e-03	ci left: 9.778092e-01	ci right 9.833058e-01	k: 9807	n:10000
RTDR1   10000 perm   2 sec   (6347 perm/sec)   p_kst 9.807000e-01   p_cons 4.653000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/RTDR1.4_1071_10000_0.9807_0.4653_1.png
                gene_name: RTDR1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
RTKN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.385802e-02	ci left: 3.368712e-01	ci right 3.556184e-01	k: 3462	n:10000
Cons ci ratio: 5.140488e-02	ci left: 3.581397e-01	ci right 3.771375e-01	k: 3676	n:10000
KS ci ratio: 6.943212e-02	ci left: 2.332365e-01	ci right 2.501142e-01	k: 2416	n:10000
RTKN   10000 perm   2 sec   (5745 perm/sec)   p_kst 2.416000e-01   p_cons 3.676000e-01   p_joint 3.462000e-01

Outputting figure to mutsig2_images.part000000000151/RTKN.4_1816_10000_0.2416_0.3676_0.3462.png
                gene_name: RTKN
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 48 percent done.
RTN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.015033e-02	ci left: 7.828967e-01	ci right 7.989335e-01	k: 7910	n:10000
Cons ci ratio: 5.697292e-02	ci left: 3.120513e-01	ci right 3.304529e-01	k: 3212	n:10000
KS ci ratio: 2.955702e-02	ci left: 6.279891e-01	ci right 6.469308e-01	k: 6375	n:10000
RTN3   10000 perm   2 sec   (4835 perm/sec)   p_kst 6.375000e-01   p_cons 3.212000e-01   p_joint 7.910000e-01

Outputting figure to mutsig2_images.part000000000151/RTN3.4_3209_10000_0.6375_0.3212_0.791.png
                gene_name: RTN3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 50 percent done.
RXRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.869571e-02	ci left: 4.965503e-01	ci right 5.162460e-01	k: 5064	n:10000
Cons ci ratio: 2.805903e-03	ci left: 9.934134e-01	ci right 9.962867e-01	k: 9950	n:10000
KS ci ratio: 4.596265e-02	ci left: 4.112975e-01	ci right 4.307486e-01	k: 4210	n:10000
RXRG   10000 perm   2 sec   (6271 perm/sec)   p_kst 4.210000e-01   p_cons 9.950000e-01   p_joint 5.064000e-01

Outputting figure to mutsig2_images.part000000000151/RXRG.4_1489_10000_0.421_0.995_0.5064.png
                gene_name: RXRG
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 52 percent done.
RYK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.066030e-02	ci left: 1.503128e-01	ci right 1.646873e-01	k: 1574	n:10000
Cons ci ratio: 1.488668e-02	ci left: 8.673368e-01	ci right 8.804445e-01	k: 8740	n:10000
KS ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
RYK   10000 perm   2 sec   (6066 perm/sec)   p_kst 7.170000e-02   p_cons 8.740000e-01   p_joint 1.574000e-01

Joint ci ratio: 7.216866e-02	ci left: 1.238914e-01	ci right 1.332169e-01	k: 2570	n:20000
Cons ci ratio: 1.028523e-02	ci left: 8.744000e-01	ci right 8.834895e-01	k: 17580	n:20000
KS ci ratio: 9.962254e-02	ci left: 6.825964e-02	ci right 7.546543e-02	k: 1436	n:20000
RYK   20000 perm   4 sec   (5403 perm/sec)   p_kst 7.180000e-02   p_cons 8.790000e-01   p_joint 1.285000e-01

Outputting figure to mutsig2_images.part000000000151/RYK.4_1891_20000_0.0718_0.879_0.1285.png
                gene_name: RYK
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 54 percent done.
RSPH10B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.177092e-01	ci left: 4.232871e-03	ci right 7.265981e-03	k: 56	n:10000
Cons ci ratio: 2.834030e-02	ci left: 6.472993e-01	ci right 6.660094e-01	k: 6567	n:10000
KS ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
RSPH10B   10000 perm   2 sec   (5216 perm/sec)   p_kst 4.000000e-04   p_cons 6.567000e-01   p_joint 5.600000e-03

Joint ci ratio: 2.950176e-01	ci left: 7.459769e-03	ci right 1.008604e-02	k: 174	n:20000
Cons ci ratio: 2.030552e-02	ci left: 6.440964e-01	ci right 6.573598e-01	k: 13015	n:20000
KS ci ratio: 1.385617e+00	ci left: 1.407294e-04	ci right 7.210000e-04	k: 7	n:20000
RSPH10B   20000 perm   4 sec   (4561 perm/sec)   p_kst 3.500000e-04   p_cons 6.507500e-01   p_joint 8.700000e-03

Joint ci ratio: 5.280792e-01	ci left: 1.352496e-03	ci right 2.347965e-03	k: 54	n:30000
Cons ci ratio: 1.667272e-02	ci left: 6.427655e-01	ci right 6.536058e-01	k: 19446	n:30000
KS ci ratio: 1.239386e+00	ci left: 1.371880e-04	ci right 5.694167e-04	k: 9	n:30000
RSPH10B   30000 perm   7 sec   (4218 perm/sec)   p_kst 3.000000e-04   p_cons 6.482000e-01   p_joint 1.800000e-03

Joint ci ratio: 6.623027e-01	ci left: 5.887193e-04	ci right 1.187589e-03	k: 34	n:40000
Cons ci ratio: 1.448821e-02	ci left: 6.419426e-01	ci right 6.513361e-01	k: 25866	n:40000
KS ci ratio: 1.011937e+00	ci left: 1.913610e-04	ci right 5.871709e-04	k: 14	n:40000
RSPH10B   40000 perm   10 sec   (4151 perm/sec)   p_kst 3.500000e-04   p_cons 6.466500e-01   p_joint 8.500000e-04

Joint ci ratio: 2.631017e-01	ci left: 3.838791e-03	ci right 5.019883e-03	k: 220	n:50000
Cons ci ratio: 1.290742e-02	ci left: 6.442565e-01	ci right 6.526462e-01	k: 32423	n:50000
KS ci ratio: 8.991298e-01	ci left: 2.133723e-04	ci right 5.688958e-04	k: 18	n:50000
RSPH10B   50000 perm   12 sec   (4096 perm/sec)   p_kst 3.600000e-04   p_cons 6.484600e-01   p_joint 4.400000e-03

Joint ci ratio: 2.802582e-01	ci left: 2.794924e-03	ci right 3.720822e-03	k: 194	n:60000
Cons ci ratio: 1.178525e-02	ci left: 6.445307e-01	ci right 6.521883e-01	k: 38902	n:60000
KS ci ratio: 8.552573e-01	ci left: 2.036202e-04	ci right 5.147596e-04	k: 20	n:60000
RSPH10B   60000 perm   15 sec   (4036 perm/sec)   p_kst 3.333333e-04   p_cons 6.483667e-01   p_joint 3.233333e-03

Joint ci ratio: 2.707451e-01	ci left: 2.581796e-03	ci right 3.403118e-03	k: 208	n:70000
Cons ci ratio: 1.092974e-02	ci left: 6.440336e-01	ci right 6.511256e-01	k: 45331	n:70000
KS ci ratio: 8.172364e-01	ci left: 1.969713e-04	ci right 4.757939e-04	k: 22	n:70000
RSPH10B   70000 perm   18 sec   (3976 perm/sec)   p_kst 3.142857e-04   p_cons 6.475857e-01   p_joint 2.971429e-03

Joint ci ratio: 4.524276e-01	ci left: 7.263916e-04	ci right 1.161116e-03	k: 74	n:80000
Cons ci ratio: 1.024230e-02	ci left: 6.434388e-01	ci right 6.500755e-01	k: 51741	n:80000
KS ci ratio: 7.542723e-01	ci left: 2.123114e-04	ci right 4.761643e-04	k: 26	n:80000
RSPH10B   80000 perm   20 sec   (3910 perm/sec)   p_kst 3.250000e-04   p_cons 6.467625e-01   p_joint 9.250000e-04

Joint ci ratio: 4.300751e-01	ci left: 7.246973e-04	ci right 1.130805e-03	k: 82	n:90000
Cons ci ratio: 9.667728e-03	ci left: 6.430993e-01	ci right 6.493579e-01	k: 58161	n:90000
KS ci ratio: 7.155675e-01	ci left: 2.158076e-04	ci right 4.627323e-04	k: 29	n:90000
RSPH10B   90000 perm   23 sec   (3862 perm/sec)   p_kst 3.222222e-04   p_cons 6.462333e-01   p_joint 9.111111e-04

Joint ci ratio: 3.978206e-01	ci left: 7.776701e-04	ci right 1.172200e-03	k: 96	n:100000
Cons ci ratio: 9.167877e-03	ci left: 6.434477e-01	ci right 6.493838e-01	k: 64642	n:100000
KS ci ratio: 6.928503e-01	ci left: 2.106394e-04	ci right 4.399916e-04	k: 31	n:100000
RSPH10B   100000 perm   26 sec   (3807 perm/sec)   p_kst 3.100000e-04   p_cons 6.464200e-01   p_joint 9.600000e-04

Joint ci ratio: 3.770152e-01	ci left: 7.972398e-04	ci right 1.175322e-03	k: 107	n:110000
Cons ci ratio: 8.732753e-03	ci left: 6.440308e-01	ci right 6.496887e-01	k: 71155	n:110000
KS ci ratio: 6.721675e-01	ci left: 2.065149e-04	ci right 4.212860e-04	k: 33	n:110000
RSPH10B   110000 perm   29 sec   (3751 perm/sec)   p_kst 3.000000e-04   p_cons 6.468636e-01   p_joint 9.727273e-04

Joint ci ratio: 3.220219e-01	ci left: 1.035074e-03	ci right 1.439650e-03	k: 147	n:120000
Cons ci ratio: 8.372976e-03	ci left: 6.434953e-01	ci right 6.489143e-01	k: 77545	n:120000
KS ci ratio: 6.443420e-01	ci left: 2.101249e-04	ci right 4.153025e-04	k: 36	n:120000
RSPH10B   120000 perm   32 sec   (3695 perm/sec)   p_kst 3.000000e-04   p_cons 6.462083e-01   p_joint 1.225000e-03

Joint ci ratio: 2.742384e-01	ci left: 1.354241e-03	ci right 1.791553e-03	k: 203	n:130000
Cons ci ratio: 8.043970e-03	ci left: 6.436322e-01	ci right 6.488382e-01	k: 84011	n:130000
KS ci ratio: 5.908599e-01	ci left: 2.393894e-04	ci right 4.455184e-04	k: 43	n:130000
RSPH10B   130000 perm   36 sec   (3638 perm/sec)   p_kst 3.307692e-04   p_cons 6.462385e-01   p_joint 1.561538e-03

Joint ci ratio: 2.640777e-01	ci left: 1.364086e-03	ci right 1.785561e-03	k: 219	n:140000
Cons ci ratio: 7.759044e-03	ci left: 6.432738e-01	ci right 6.482916e-01	k: 90410	n:140000
KS ci ratio: 5.657042e-01	ci left: 2.466803e-04	ci right 4.464041e-04	k: 47	n:140000
RSPH10B   140000 perm   39 sec   (3567 perm/sec)   p_kst 3.357143e-04   p_cons 6.457857e-01   p_joint 1.564286e-03

Joint ci ratio: 2.544293e-01	ci left: 1.379120e-03	ci right 1.787202e-03	k: 236	n:150000
Cons ci ratio: 7.500852e-03	ci left: 6.430597e-01	ci right 6.479080e-01	k: 96823	n:150000
KS ci ratio: 5.284740e-01	ci left: 2.704543e-04	ci right 4.696961e-04	k: 54	n:150000
RSPH10B   150000 perm   43 sec   (3516 perm/sec)   p_kst 3.600000e-04   p_cons 6.454867e-01   p_joint 1.573333e-03

Joint ci ratio: 2.477280e-01	ci left: 1.369062e-03	ci right 1.761855e-03	k: 249	n:160000
Cons ci ratio: 7.254031e-03	ci left: 6.436824e-01	ci right 6.483748e-01	k: 103365	n:160000
KS ci ratio: 5.191226e-01	ci left: 2.643967e-04	ci right 4.544804e-04	k: 56	n:160000
RSPH10B   160000 perm   46 sec   (3466 perm/sec)   p_kst 3.500000e-04   p_cons 6.460312e-01   p_joint 1.556250e-03

Joint ci ratio: 2.429214e-01	ci left: 1.343734e-03	ci right 1.720652e-03	k: 259	n:170000
Cons ci ratio: 7.038470e-03	ci left: 6.436860e-01	ci right 6.482384e-01	k: 109814	n:170000
KS ci ratio: 5.191281e-01	ci left: 2.488434e-04	ci right 4.277475e-04	k: 56	n:170000
RSPH10B   170000 perm   50 sec   (3420 perm/sec)   p_kst 3.294118e-04   p_cons 6.459647e-01   p_joint 1.523529e-03

Joint ci ratio: 2.383840e-01	ci left: 1.321286e-03	ci right 1.683962e-03	k: 269	n:180000
Cons ci ratio: 6.829754e-03	ci left: 6.444477e-01	ci right 6.488698e-01	k: 116399	n:180000
KS ci ratio: 5.059841e-01	ci left: 2.495287e-04	ci right 4.227894e-04	k: 59	n:180000
RSPH10B   180000 perm   53 sec   (3375 perm/sec)   p_kst 3.277778e-04   p_cons 6.466611e-01   p_joint 1.494444e-03

Joint ci ratio: 2.340915e-01	ci left: 1.301260e-03	ci right 1.651076e-03	k: 279	n:190000
Cons ci ratio: 6.642974e-03	ci left: 6.448252e-01	ci right 6.491282e-01	k: 122926	n:190000
KS ci ratio: 4.899162e-01	ci left: 2.548035e-04	ci right 4.242139e-04	k: 63	n:190000
RSPH10B   190000 perm   57 sec   (3330 perm/sec)   p_kst 3.315789e-04   p_cons 6.469789e-01   p_joint 1.468421e-03

Joint ci ratio: 2.453228e-01	ci left: 1.118687e-03	ci right 1.436052e-03	k: 254	n:200000
Cons ci ratio: 6.471780e-03	ci left: 6.450912e-01	ci right 6.492846e-01	k: 129438	n:200000
KS ci ratio: 4.718300e-01	ci left: 2.640327e-04	ci right 4.310114e-04	k: 68	n:200000
RSPH10B   200000 perm   61 sec   (3288 perm/sec)   p_kst 3.400000e-04   p_cons 6.471900e-01   p_joint 1.270000e-03

Joint ci ratio: 2.600383e-01	ci left: 9.405071e-04	ci right 1.225933e-03	k: 226	n:210000
Cons ci ratio: 6.317188e-03	ci left: 6.450422e-01	ci right 6.491347e-01	k: 135889	n:210000
KS ci ratio: 4.587205e-01	ci left: 2.682740e-04	ci right 4.317526e-04	k: 72	n:210000
RSPH10B   210000 perm   65 sec   (3246 perm/sec)   p_kst 3.428571e-04   p_cons 6.470905e-01   p_joint 1.076190e-03

Joint ci ratio: 2.555754e-01	ci left: 9.317703e-04	ci right 1.208918e-03	k: 234	n:220000
Cons ci ratio: 6.173723e-03	ci left: 6.449578e-01	ci right 6.489565e-01	k: 142331	n:220000
KS ci ratio: 4.495761e-01	ci left: 2.681558e-04	ci right 4.273140e-04	k: 75	n:220000
RSPH10B   220000 perm   69 sec   (3206 perm/sec)   p_kst 3.409091e-04   p_cons 6.469591e-01   p_joint 1.063636e-03

Joint ci ratio: 2.196702e-01	ci left: 1.230786e-03	ci right 1.538522e-03	k: 317	n:230000
Cons ci ratio: 6.033344e-03	ci left: 6.453563e-01	ci right 6.492661e-01	k: 148882	n:230000
KS ci ratio: 4.354779e-01	ci left: 2.758138e-04	ci right 4.328813e-04	k: 80	n:230000
RSPH10B   230000 perm   73 sec   (3168 perm/sec)   p_kst 3.478261e-04   p_cons 6.473130e-01   p_joint 1.378261e-03

Joint ci ratio: 2.153136e-01	ci left: 1.230719e-03	ci right 1.531530e-03	k: 330	n:240000
Cons ci ratio: 5.907290e-03	ci left: 6.453220e-01	ci right 6.491495e-01	k: 155337	n:240000
KS ci ratio: 4.276313e-01	ci left: 2.754634e-04	ci right 4.286947e-04	k: 83	n:240000
RSPH10B   240000 perm   77 sec   (3130 perm/sec)   p_kst 3.458333e-04   p_cons 6.472375e-01   p_joint 1.375000e-03

Joint ci ratio: 2.232247e-01	ci left: 1.094532e-03	ci right 1.373238e-03	k: 307	n:250000
Cons ci ratio: 5.789175e-03	ci left: 6.452631e-01	ci right 6.490135e-01	k: 161785	n:250000
KS ci ratio: 4.154444e-01	ci left: 2.823236e-04	ci right 4.336561e-04	k: 88	n:250000
RSPH10B   250000 perm   81 sec   (3093 perm/sec)   p_kst 3.520000e-04   p_cons 6.471400e-01   p_joint 1.228000e-03

Joint ci ratio: 2.163088e-01	ci left: 1.125127e-03	ci right 1.401568e-03	k: 327	n:260000
Cons ci ratio: 5.673666e-03	ci left: 6.455484e-01	ci right 6.492252e-01	k: 168321	n:260000
KS ci ratio: 4.064116e-01	ci left: 2.852592e-04	ci right 4.339435e-04	k: 92	n:260000
RSPH10B   260000 perm   85 sec   (3055 perm/sec)   p_kst 3.538462e-04   p_cons 6.473885e-01   p_joint 1.257692e-03

Joint ci ratio: 2.589305e-01	ci left: 7.384209e-04	ci right 9.614072e-04	k: 228	n:270000
Cons ci ratio: 5.570086e-03	ci left: 6.453793e-01	ci right 6.489879e-01	k: 174740	n:270000
KS ci ratio: 3.979435e-01	ci left: 2.880103e-04	ci right 4.341771e-04	k: 96	n:270000
RSPH10B   270000 perm   89 sec   (3021 perm/sec)   p_kst 3.555556e-04   p_cons 6.471852e-01   p_joint 8.444444e-04

Joint ci ratio: 2.730184e-01	ci left: 6.353739e-04	ci right 8.394750e-04	k: 205	n:280000
Cons ci ratio: 5.467016e-03	ci left: 6.456377e-01	ci right 6.491806e-01	k: 181275	n:280000
KS ci ratio: 3.939045e-01	ci left: 2.841558e-04	ci right 4.265216e-04	k: 98	n:280000
RSPH10B   280000 perm   94 sec   (2986 perm/sec)   p_kst 3.500000e-04   p_cons 6.474107e-01   p_joint 7.321429e-04

Joint ci ratio: 2.970848e-01	ci left: 5.109883e-04	ci right 6.923373e-04	k: 173	n:290000
Cons ci ratio: 5.375425e-03	ci left: 6.453714e-01	ci right 6.488533e-01	k: 187663	n:290000
KS ci ratio: 3.899860e-01	ci left: 2.805740e-04	ci right 4.193871e-04	k: 100	n:290000
RSPH10B   290000 perm   98 sec   (2952 perm/sec)   p_kst 3.448276e-04   p_cons 6.471138e-01   p_joint 5.965517e-04

Joint ci ratio: 2.920914e-01	ci left: 5.124777e-04	ci right 6.907330e-04	k: 179	n:300000
Cons ci ratio: 5.288244e-03	ci left: 6.451266e-01	ci right 6.485505e-01	k: 194052	n:300000
KS ci ratio: 3.824852e-01	ci left: 2.832603e-04	ci right 4.200293e-04	k: 104	n:300000
RSPH10B   300000 perm   103 sec   (2917 perm/sec)   p_kst 3.466667e-04   p_cons 6.468400e-01   p_joint 5.966667e-04

Joint ci ratio: 2.524108e-01	ci left: 6.793677e-04	ci right 8.785432e-04	k: 240	n:310000
Cons ci ratio: 5.376026e-03	ci left: 6.299863e-01	ci right 6.333854e-01	k: 195823	n:310000
KS ci ratio: 3.720027e-01	ci left: 2.916430e-04	ci right 4.276610e-04	k: 110	n:310000
RSPH10B   310000 perm   107 sec   (2885 perm/sec)   p_kst 3.548387e-04   p_cons 6.316871e-01   p_joint 7.741935e-04

Joint ci ratio: 2.478253e-01	ci left: 6.844999e-04	ci right 8.809727e-04	k: 249	n:320000
Cons ci ratio: 5.288903e-03	ci left: 6.302294e-01	ci right 6.335745e-01	k: 202209	n:320000
KS ci ratio: 3.638963e-01	ci left: 2.967098e-04	ci right 4.313597e-04	k: 115	n:320000
RSPH10B   320000 perm   112 sec   (2847 perm/sec)   p_kst 3.593750e-04   p_cons 6.319031e-01   p_joint 7.781250e-04

Joint ci ratio: 2.420819e-01	ci left: 6.978900e-04	ci right 8.928668e-04	k: 261	n:330000
Cons ci ratio: 5.212429e-03	ci left: 6.298727e-01	ci right 6.331674e-01	k: 208402	n:330000
KS ci ratio: 3.592805e-01	ci left: 2.959836e-04	ci right 4.282016e-04	k: 118	n:330000
RSPH10B   330000 perm   117 sec   (2811 perm/sec)   p_kst 3.575758e-04   p_cons 6.315212e-01   p_joint 7.909091e-04

Joint ci ratio: 2.389117e-01	ci left: 6.967115e-04	ci right 8.884326e-04	k: 268	n:340000
Cons ci ratio: 5.135048e-03	ci left: 6.299113e-01	ci right 6.331571e-01	k: 214722	n:340000
KS ci ratio: 3.562997e-01	ci left: 2.926317e-04	ci right 4.220166e-04	k: 120	n:340000
RSPH10B   340000 perm   122 sec   (2777 perm/sec)   p_kst 3.529412e-04   p_cons 6.315353e-01   p_joint 7.882353e-04

Joint ci ratio: 2.329253e-01	ci left: 7.144423e-04	ci right 9.054074e-04	k: 282	n:350000
Cons ci ratio: 5.060642e-03	ci left: 6.299823e-01	ci right 6.331813e-01	k: 221054	n:350000
KS ci ratio: 3.505523e-01	ci left: 2.946849e-04	ci right 4.223979e-04	k: 124	n:350000
RSPH10B   350000 perm   127 sec   (2750 perm/sec)   p_kst 3.542857e-04   p_cons 6.315829e-01   p_joint 8.057143e-04

Joint ci ratio: 2.304953e-01	ci left: 7.102958e-04	ci right 8.978899e-04	k: 288	n:360000
Cons ci ratio: 4.990094e-03	ci left: 6.299829e-01	ci right 6.331372e-01	k: 227362	n:360000
KS ci ratio: 3.491598e-01	ci left: 2.890327e-04	ci right 4.136859e-04	k: 125	n:360000
RSPH10B   360000 perm   132 sec   (2723 perm/sec)   p_kst 3.472222e-04   p_cons 6.315611e-01   p_joint 8.000000e-04

Joint ci ratio: 2.371613e-01	ci left: 6.503855e-04	ci right 8.278546e-04	k: 272	n:370000
Cons ci ratio: 4.921530e-03	ci left: 6.300677e-01	ci right 6.331789e-01	k: 233701	n:370000
KS ci ratio: 3.450761e-01	ci left: 2.886223e-04	ci right 4.113174e-04	k: 128	n:370000
RSPH10B   370000 perm   137 sec   (2695 perm/sec)   p_kst 3.459459e-04   p_cons 6.316243e-01   p_joint 7.351351e-04

Joint ci ratio: 2.488387e-01	ci left: 5.714811e-04	ci right 7.362880e-04	k: 247	n:380000
Cons ci ratio: 4.856321e-03	ci left: 6.300903e-01	ci right 6.331603e-01	k: 240018	n:380000
KS ci ratio: 3.398472e-01	ci left: 2.906481e-04	ci right 4.119213e-04	k: 132	n:380000
RSPH10B   380000 perm   142 sec   (2668 perm/sec)   p_kst 3.473684e-04   p_cons 6.316263e-01   p_joint 6.500000e-04

Joint ci ratio: 2.439675e-01	ci left: 5.808860e-04	ci right 7.446293e-04	k: 257	n:390000
Cons ci ratio: 4.791788e-03	ci left: 6.302917e-01	ci right 6.333217e-01	k: 246405	n:390000
KS ci ratio: 3.312406e-01	ci left: 2.996327e-04	ci right 4.208140e-04	k: 139	n:390000
RSPH10B   390000 perm   148 sec   (2642 perm/sec)   p_kst 3.564103e-04   p_cons 6.318077e-01   p_joint 6.589744e-04

Joint ci ratio: 2.200816e-01	ci left: 7.053178e-04	ci right 8.820430e-04	k: 316	n:400000
Cons ci ratio: 4.732735e-03	ci left: 6.301905e-01	ci right 6.331826e-01	k: 252675	n:400000
KS ci ratio: 3.266075e-01	ci left: 3.013163e-04	ci right 4.211164e-04	k: 143	n:400000
RSPH10B   400000 perm   153 sec   (2610 perm/sec)   p_kst 3.575000e-04   p_cons 6.316875e-01   p_joint 7.900000e-04

Joint ci ratio: 2.293187e-01	ci left: 6.305669e-04	ci right 7.961333e-04	k: 291	n:410000
Cons ci ratio: 4.674096e-03	ci left: 6.302654e-01	ci right 6.332206e-01	k: 259015	n:410000
KS ci ratio: 3.243633e-01	ci left: 2.984465e-04	ci right 4.161207e-04	k: 145	n:410000
RSPH10B   410000 perm   159 sec   (2579 perm/sec)   p_kst 3.536585e-04   p_cons 6.317439e-01   p_joint 7.097561e-04

Joint ci ratio: 2.262402e-01	ci left: 6.335144e-04	ci right 7.973102e-04	k: 299	n:420000
Cons ci ratio: 4.618883e-03	ci left: 6.302058e-01	ci right 6.331257e-01	k: 265300	n:420000
KS ci ratio: 3.200091e-01	ci left: 3.000944e-04	ci right 4.165044e-04	k: 149	n:420000
RSPH10B   420000 perm   164 sec   (2555 perm/sec)   p_kst 3.547619e-04   p_cons 6.316667e-01   p_joint 7.119048e-04

Joint ci ratio: 2.240115e-01	ci left: 6.319481e-04	ci right 7.935072e-04	k: 305	n:430000
Cons ci ratio: 4.566403e-03	ci left: 6.300654e-01	ci right 6.329514e-01	k: 271549	n:430000
KS ci ratio: 3.168565e-01	ci left: 2.995347e-04	ci right 4.143507e-04	k: 152	n:430000
RSPH10B   430000 perm   170 sec   (2532 perm/sec)   p_kst 3.534884e-04   p_cons 6.315093e-01   p_joint 7.093023e-04

Joint ci ratio: 2.218474e-01	ci left: 6.304605e-04	ci right 7.898696e-04	k: 311	n:440000
Cons ci ratio: 4.515561e-03	ci left: 6.299430e-01	ci right 6.327962e-01	k: 277803	n:440000
KS ci ratio: 3.118021e-01	ci left: 3.031945e-04	ci right 4.171906e-04	k: 157	n:440000
RSPH10B   440000 perm   176 sec   (2504 perm/sec)   p_kst 3.568182e-04   p_cons 6.313705e-01   p_joint 7.068182e-04

Joint ci ratio: 2.187148e-01	ci left: 6.353470e-04	ci right 7.934184e-04	k: 320	n:450000
Cons ci ratio: 4.465143e-03	ci left: 6.299552e-01	ci right 6.327765e-01	k: 284115	n:450000
KS ci ratio: 3.060445e-01	ci left: 3.087569e-04	ci right 4.222831e-04	k: 163	n:450000
RSPH10B   450000 perm   181 sec   (2480 perm/sec)   p_kst 3.622222e-04   p_cons 6.313667e-01   p_joint 7.111111e-04

Joint ci ratio: 2.163684e-01	ci left: 6.359235e-04	ci right 7.922154e-04	k: 327	n:460000
Cons ci ratio: 4.417264e-03	ci left: 6.298734e-01	ci right 6.326640e-01	k: 290384	n:460000
KS ci ratio: 3.014827e-01	ci left: 3.120861e-04	ci right 4.247984e-04	k: 168	n:460000
RSPH10B   460000 perm   187 sec   (2457 perm/sec)   p_kst 3.652174e-04   p_cons 6.312696e-01   p_joint 7.108696e-04

Joint ci ratio: 2.131430e-01	ci left: 6.425257e-04	ci right 7.977786e-04	k: 337	n:470000
Cons ci ratio: 4.370093e-03	ci left: 6.298805e-01	ci right 6.326413e-01	k: 296693	n:470000
KS ci ratio: 2.979769e-01	ci left: 3.133168e-04	ci right 4.249088e-04	k: 172	n:470000
RSPH10B   470000 perm   193 sec   (2435 perm/sec)   p_kst 3.659574e-04   p_cons 6.312617e-01   p_joint 7.170213e-04

Joint ci ratio: 2.094562e-01	ci left: 6.528173e-04	ci right 8.074786e-04	k: 349	n:480000
Cons ci ratio: 4.324711e-03	ci left: 6.298541e-01	ci right 6.325860e-01	k: 302986	n:480000
KS ci ratio: 2.913161e-01	ci left: 3.222246e-04	ci right 4.339510e-04	k: 180	n:480000
RSPH10B   480000 perm   199 sec   (2414 perm/sec)   p_kst 3.750000e-04   p_cons 6.312208e-01   p_joint 7.270833e-04

Joint ci ratio: 2.170363e-01	ci left: 5.931278e-04	ci right 7.394116e-04	k: 325	n:490000
Cons ci ratio: 4.279645e-03	ci left: 6.299453e-01	ci right 6.326490e-01	k: 309336	n:490000
KS ci ratio: 2.897203e-01	ci left: 3.194328e-04	ci right 4.294732e-04	k: 182	n:490000
RSPH10B   490000 perm   205 sec   (2393 perm/sec)   p_kst 3.714286e-04   p_cons 6.312980e-01   p_joint 6.632653e-04

Joint ci ratio: 2.037155e-01	ci left: 6.646362e-04	ci right 8.172450e-04	k: 369	n:500000
Cons ci ratio: 4.236123e-03	ci left: 6.300150e-01	ci right 6.326915e-01	k: 315677	n:500000
KS ci ratio: 2.873746e-01	ci left: 3.186099e-04	ci right 4.273168e-04	k: 185	n:500000
RSPH10B   500000 perm   211 sec   (2369 perm/sec)   p_kst 3.700000e-04   p_cons 6.313540e-01   p_joint 7.380000e-04

Joint ci ratio: 2.023533e-01	ci left: 6.609095e-04	ci right 8.115224e-04	k: 374	n:510000
Cons ci ratio: 4.194909e-03	ci left: 6.299703e-01	ci right 6.326204e-01	k: 321961	n:510000
KS ci ratio: 2.850849e-01	ci left: 3.178228e-04	ci right 4.252416e-04	k: 188	n:510000
RSPH10B   510000 perm   217 sec   (2348 perm/sec)   p_kst 3.686275e-04   p_cons 6.312961e-01   p_joint 7.333333e-04

Joint ci ratio: 2.106702e-01	ci left: 5.953111e-04	ci right 7.372711e-04	k: 345	n:520000
Cons ci ratio: 4.155303e-03	ci left: 6.298792e-01	ci right 6.325039e-01	k: 328220	n:520000
KS ci ratio: 2.813868e-01	ci left: 3.206433e-04	ci right 4.273603e-04	k: 193	n:520000
RSPH10B   520000 perm   223 sec   (2327 perm/sec)   p_kst 3.711538e-04   p_cons 6.311923e-01   p_joint 6.634615e-04

Joint ci ratio: 2.094634e-01	ci left: 5.912288e-04	ci right 7.313042e-04	k: 349	n:530000
Cons ci ratio: 4.115915e-03	ci left: 6.298918e-01	ci right 6.324916e-01	k: 334532	n:530000
KS ci ratio: 2.792363e-01	ci left: 3.198560e-04	ci right 4.253542e-04	k: 196	n:530000
RSPH10B   530000 perm   230 sec   (2308 perm/sec)   p_kst 3.698113e-04   p_cons 6.311925e-01   p_joint 6.584906e-04

Joint ci ratio: 2.062466e-01	ci left: 5.995905e-04	ci right 7.391903e-04	k: 360	n:540000
Cons ci ratio: 4.077139e-03	ci left: 6.299597e-01	ci right 6.325352e-01	k: 340874	n:540000
KS ci ratio: 2.737324e-01	ci left: 3.277208e-04	ci right 4.333162e-04	k: 204	n:540000
RSPH10B   540000 perm   236 sec   (2289 perm/sec)   p_kst 3.777778e-04   p_cons 6.312481e-01   p_joint 6.666667e-04

Joint ci ratio: 2.122139e-01	ci left: 5.542287e-04	ci right 6.874865e-04	k: 340	n:550000
Cons ci ratio: 3.906596e-03	ci left: 6.454624e-01	ci right 6.479906e-01	k: 355700	n:550000
KS ci ratio: 2.711003e-01	ci left: 3.285383e-04	ci right 4.332059e-04	k: 208	n:550000
RSPH10B   550000 perm   242 sec   (2271 perm/sec)   p_kst 3.781818e-04   p_cons 6.467273e-01   p_joint 6.181818e-04

Joint ci ratio: 2.051151e-01	ci left: 5.849511e-04	ci right 7.203015e-04	k: 364	n:560000
Cons ci ratio: 3.871971e-03	ci left: 6.454250e-01	ci right 6.479306e-01	k: 362140	n:560000
KS ci ratio: 2.685426e-01	ci left: 3.293313e-04	ci right 4.330950e-04	k: 212	n:560000
RSPH10B   560000 perm   249 sec   (2252 perm/sec)   p_kst 3.785714e-04   p_cons 6.466786e-01   p_joint 6.500000e-04

Joint ci ratio: 2.071132e-01	ci left: 5.630412e-04	ci right 6.947519e-04	k: 357	n:570000
Cons ci ratio: 3.838163e-03	ci left: 6.453995e-01	ci right 6.478832e-01	k: 368586	n:570000
KS ci ratio: 2.679151e-01	ci left: 3.251898e-04	ci right 4.273690e-04	k: 213	n:570000
RSPH10B   570000 perm   255 sec   (2234 perm/sec)   p_kst 3.736842e-04   p_cons 6.466421e-01   p_joint 6.263158e-04

Joint ci ratio: 2.053992e-01	ci left: 5.631442e-04	ci right 6.936518e-04	k: 363	n:580000
Cons ci ratio: 3.805741e-03	ci left: 6.453130e-01	ci right 6.477752e-01	k: 374996	n:580000
KS ci ratio: 2.654458e-01	ci left: 3.260186e-04	ci right 4.273571e-04	k: 217	n:580000
RSPH10B   580000 perm   262 sec   (2216 perm/sec)   p_kst 3.741379e-04   p_cons 6.465448e-01   p_joint 6.258621e-04

Joint ci ratio: 1.535520e-01	ci left: 1.018659e-03	ci right 1.189690e-03	k: 650	n:590000
Cons ci ratio: 3.772770e-03	ci left: 6.453939e-01	ci right 6.478351e-01	k: 381503	n:590000
KS ci ratio: 2.642368e-01	ci left: 3.236576e-04	ci right 4.237282e-04	k: 219	n:590000
RSPH10B   590000 perm   268 sec   (2198 perm/sec)   p_kst 3.711864e-04   p_cons 6.466153e-01   p_joint 1.101695e-03

Joint ci ratio: 1.530833e-01	ci left: 1.008092e-03	ci right 1.176785e-03	k: 654	n:600000
Cons ci ratio: 3.741064e-03	ci left: 6.454206e-01	ci right 6.478413e-01	k: 387979	n:600000
KS ci ratio: 2.630443e-01	ci left: 3.213763e-04	ci right 4.202193e-04	k: 221	n:600000
RSPH10B   600000 perm   275 sec   (2180 perm/sec)   p_kst 3.683333e-04   p_cons 6.466317e-01   p_joint 1.090000e-03

Joint ci ratio: 1.518138e-01	ci left: 1.008911e-03	ci right 1.176214e-03	k: 665	n:610000
Cons ci ratio: 3.709958e-03	ci left: 6.454694e-01	ci right 6.478702e-01	k: 394469	n:610000
KS ci ratio: 2.612849e-01	ci left: 3.207027e-04	ci right 4.185710e-04	k: 224	n:610000
RSPH10B   610000 perm   282 sec   (2163 perm/sec)   p_kst 3.672131e-04   p_cons 6.466705e-01   p_joint 1.090164e-03

Joint ci ratio: 1.506869e-01	ci left: 1.008156e-03	ci right 1.173981e-03	k: 675	n:620000
Cons ci ratio: 3.679225e-03	ci left: 6.455652e-01	ci right 6.479463e-01	k: 400989	n:620000
KS ci ratio: 2.589928e-01	ci left: 3.215611e-04	ci right 4.186912e-04	k: 228	n:620000
RSPH10B   620000 perm   289 sec   (2144 perm/sec)   p_kst 3.677419e-04   p_cons 6.467565e-01   p_joint 1.088710e-03

Joint ci ratio: 1.505767e-01	ci left: 9.936809e-04	ci right 1.156995e-03	k: 676	n:630000
Cons ci ratio: 3.650689e-03	ci left: 6.454769e-01	ci right 6.478392e-01	k: 407395	n:630000
KS ci ratio: 2.562106e-01	ci left: 3.238811e-04	ci right 4.204930e-04	k: 233	n:630000
RSPH10B   630000 perm   296 sec   (2127 perm/sec)   p_kst 3.698413e-04   p_cons 6.466587e-01   p_joint 1.073016e-03

Joint ci ratio: 1.493681e-01	ci left: 9.946972e-04	ci right 1.156748e-03	k: 687	n:640000
Cons ci ratio: 3.620317e-03	ci left: 6.457057e-01	ci right 6.480492e-01	k: 414002	n:640000
KS ci ratio: 2.540484e-01	ci left: 3.246709e-04	ci right 4.205716e-04	k: 237	n:640000
RSPH10B   640000 perm   303 sec   (2111 perm/sec)   p_kst 3.703125e-04   p_cons 6.468781e-01   p_joint 1.073437e-03

Joint ci ratio: 1.833053e-01	ci left: 6.386376e-04	ci right 7.689559e-04	k: 456	n:650000
Cons ci ratio: 3.591934e-03	ci left: 6.457690e-01	ci right 6.480943e-01	k: 420506	n:650000
KS ci ratio: 2.529880e-01	ci left: 3.225573e-04	ci right 4.173733e-04	k: 239	n:650000
RSPH10B   650000 perm   310 sec   (2093 perm/sec)   p_kst 3.676923e-04   p_cons 6.469323e-01   p_joint 7.015385e-04

Joint ci ratio: 1.813316e-01	ci left: 6.434214e-04	ci right 7.731471e-04	k: 466	n:660000
Cons ci ratio: 3.565699e-03	ci left: 6.456394e-01	ci right 6.479472e-01	k: 426884	n:660000
KS ci ratio: 2.503929e-01	ci left: 3.247680e-04	ci right 4.191020e-04	k: 244	n:660000
RSPH10B   660000 perm   318 sec   (2077 perm/sec)   p_kst 3.696970e-04   p_cons 6.467939e-01   p_joint 7.060606e-04

Joint ci ratio: 1.797980e-01	ci left: 6.452188e-04	ci right 7.740870e-04	k: 474	n:670000
Cons ci ratio: 3.538260e-03	ci left: 6.457423e-01	ci right 6.480326e-01	k: 433415	n:670000
KS ci ratio: 2.488740e-01	ci left: 3.241183e-04	ci right 4.176040e-04	k: 247	n:670000
RSPH10B   670000 perm   325 sec   (2060 perm/sec)   p_kst 3.686567e-04   p_cons 6.468881e-01   p_joint 7.074627e-04

Joint ci ratio: 1.794214e-01	ci left: 6.385390e-04	ci right 7.657769e-04	k: 476	n:680000
Cons ci ratio: 3.512451e-03	ci left: 6.457112e-01	ci right 6.479846e-01	k: 439857	n:680000
KS ci ratio: 2.478768e-01	ci left: 3.221099e-04	ci right 4.145867e-04	k: 249	n:680000
RSPH10B   680000 perm   333 sec   (2044 perm/sec)   p_kst 3.661765e-04   p_cons 6.468485e-01   p_joint 7.000000e-04

Joint ci ratio: 1.914462e-01	ci left: 5.491222e-04	ci right 6.667305e-04	k: 418	n:690000
Cons ci ratio: 3.486391e-03	ci left: 6.457869e-01	ci right 6.480437e-01	k: 446372	n:690000
KS ci ratio: 2.440027e-01	ci left: 3.283215e-04	ci right 4.208853e-04	k: 257	n:690000
RSPH10B   690000 perm   340 sec   (2029 perm/sec)   p_kst 3.724638e-04   p_cons 6.469159e-01   p_joint 6.057971e-04

Joint ci ratio: 1.947299e-01	ci left: 5.222436e-04	ci right 6.362411e-04	k: 404	n:700000
Cons ci ratio: 3.461704e-03	ci left: 6.457548e-01	ci right 6.479954e-01	k: 452813	n:700000
KS ci ratio: 2.435317e-01	ci left: 3.249724e-04	ci right 4.163884e-04	k: 258	n:700000
RSPH10B   700000 perm   348 sec   (2013 perm/sec)   p_kst 3.685714e-04   p_cons 6.468757e-01   p_joint 5.771429e-04

Joint ci ratio: 1.449117e-01	ci left: 9.549612e-04	ci right 1.105496e-03	k: 730	n:710000
Cons ci ratio: 3.436654e-03	ci left: 6.458406e-01	ci right 6.480653e-01	k: 459337	n:710000
KS ci ratio: 2.416726e-01	ci left: 3.256867e-04	ci right 4.164994e-04	k: 262	n:710000
RSPH10B   710000 perm   355 sec   (1999 perm/sec)   p_kst 3.690141e-04   p_cons 6.469535e-01   p_joint 1.028169e-03

Joint ci ratio: 1.439306e-01	ci left: 9.550849e-04	ci right 1.104532e-03	k: 740	n:720000
Cons ci ratio: 3.412492e-03	ci left: 6.458768e-01	ci right 6.480859e-01	k: 465827	n:720000
KS ci ratio: 2.398555e-01	ci left: 3.263837e-04	ci right 4.166047e-04	k: 266	n:720000
RSPH10B   720000 perm   363 sec   (1984 perm/sec)   p_kst 3.694444e-04   p_cons 6.469819e-01   p_joint 1.027778e-03

Joint ci ratio: 1.354172e-01	ci left: 1.068921e-03	ci right 1.225492e-03	k: 836	n:730000
Cons ci ratio: 3.388711e-03	ci left: 6.459285e-01	ci right 6.481224e-01	k: 472329	n:730000
KS ci ratio: 2.380787e-01	ci left: 3.270641e-04	ci right 4.167047e-04	k: 270	n:730000
RSPH10B   730000 perm   371 sec   (1970 perm/sec)   p_kst 3.698630e-04   p_cons 6.470260e-01   p_joint 1.145205e-03

Joint ci ratio: 1.344568e-01	ci left: 1.070145e-03	ci right 1.225694e-03	k: 848	n:740000
Cons ci ratio: 3.365501e-03	ci left: 6.459680e-01	ci right 6.481470e-01	k: 478823	n:740000
KS ci ratio: 2.363408e-01	ci left: 3.277285e-04	ci right 4.167996e-04	k: 274	n:740000
RSPH10B   740000 perm   378 sec   (1955 perm/sec)   p_kst 3.702703e-04   p_cons 6.470581e-01   p_joint 1.145946e-03

Joint ci ratio: 1.335164e-01	ci left: 1.071340e-03	ci right 1.225887e-03	k: 860	n:750000
Cons ci ratio: 3.342623e-03	ci left: 6.460253e-01	ci right 6.481896e-01	k: 485331	n:750000
KS ci ratio: 2.346404e-01	ci left: 3.283775e-04	ci right 4.168897e-04	k: 278	n:750000
RSPH10B   750000 perm   386 sec   (1941 perm/sec)   p_kst 3.706667e-04   p_cons 6.471080e-01   p_joint 1.146667e-03

Joint ci ratio: 1.390428e-01	ci left: 9.720868e-04	ci right 1.118601e-03	k: 793	n:760000
Cons ci ratio: 3.320819e-03	ci left: 6.459968e-01	ci right 6.481469e-01	k: 491775	n:760000
KS ci ratio: 2.333891e-01	ci left: 3.277727e-04	ci right 4.155827e-04	k: 281	n:760000
RSPH10B   760000 perm   394 sec   (1928 perm/sec)   p_kst 3.697368e-04   p_cons 6.470724e-01   p_joint 1.043421e-03

Joint ci ratio: 1.381755e-01	ci left: 9.719989e-04	ci right 1.117511e-03	k: 803	n:770000
Cons ci ratio: 3.298357e-03	ci left: 6.461185e-01	ci right 6.482544e-01	k: 498334	n:770000
KS ci ratio: 2.329768e-01	ci left: 3.247387e-04	ci right 4.115600e-04	k: 282	n:770000
RSPH10B   770000 perm   402 sec   (1914 perm/sec)   p_kst 3.662338e-04   p_cons 6.471870e-01   p_joint 1.042857e-03

Joint ci ratio: 1.374086e-01	ci left: 9.706781e-04	ci right 1.115120e-03	k: 812	n:780000
Cons ci ratio: 3.276675e-03	ci left: 6.461910e-01	ci right 6.483131e-01	k: 504857	n:780000
KS ci ratio: 2.325667e-01	ci left: 3.217826e-04	ci right 4.076404e-04	k: 283	n:780000
RSPH10B   780000 perm   410 sec   (1901 perm/sec)   p_kst 3.628205e-04   p_cons 6.472526e-01   p_joint 1.041026e-03

Joint ci ratio: 1.735244e-01	ci left: 5.895548e-04	ci right 7.027663e-04	k: 509	n:790000
Cons ci ratio: 3.256056e-03	ci left: 6.461717e-01	ci right 6.482804e-01	k: 511309	n:790000
KS ci ratio: 2.301479e-01	ci left: 3.248642e-04	ci right 4.105146e-04	k: 289	n:790000
RSPH10B   790000 perm   419 sec   (1887 perm/sec)   p_kst 3.658228e-04   p_cons 6.472266e-01   p_joint 6.443038e-04

Joint ci ratio: 1.726801e-01	ci left: 5.881646e-04	ci right 7.005023e-04	k: 514	n:800000
Cons ci ratio: 3.235201e-03	ci left: 6.462406e-01	ci right 6.483359e-01	k: 517831	n:800000
KS ci ratio: 2.285769e-01	ci left: 3.255162e-04	ci right 4.106700e-04	k: 293	n:800000
RSPH10B   800000 perm   427 sec   (1874 perm/sec)   p_kst 3.662500e-04   p_cons 6.472887e-01   p_joint 6.425000e-04

Joint ci ratio: 1.742107e-01	ci left: 5.702740e-04	ci right 6.802618e-04	k: 505	n:810000
Cons ci ratio: 3.214298e-03	ci left: 6.463707e-01	ci right 6.484529e-01	k: 524404	n:810000
KS ci ratio: 2.285774e-01	ci left: 3.214974e-04	ci right 4.056001e-04	k: 293	n:810000
RSPH10B   810000 perm   435 sec   (1862 perm/sec)   p_kst 3.617284e-04   p_cons 6.474123e-01   p_joint 6.234568e-04

Joint ci ratio: 1.731870e-01	ci left: 5.703184e-04	ci right 6.796007e-04	k: 511	n:820000
Cons ci ratio: 3.195416e-03	ci left: 6.462659e-01	ci right 6.483355e-01	k: 530787	n:820000
KS ci ratio: 2.266580e-01	ci left: 3.233266e-04	ci right 4.070983e-04	k: 298	n:820000
RSPH10B   820000 perm   444 sec   (1847 perm/sec)   p_kst 3.634146e-04   p_cons 6.473012e-01   p_joint 6.231707e-04

Joint ci ratio: 1.720150e-01	ci left: 5.715166e-04	ci right 6.802105e-04	k: 518	n:830000
Cons ci ratio: 3.175840e-03	ci left: 6.463107e-01	ci right 6.483678e-01	k: 537292	n:830000
KS ci ratio: 2.251569e-01	ci left: 3.239777e-04	ci right 4.072851e-04	k: 302	n:830000
RSPH10B   830000 perm   452 sec   (1834 perm/sec)   p_kst 3.638554e-04   p_cons 6.473398e-01   p_joint 6.240964e-04

Joint ci ratio: 1.716849e-01	ci left: 5.669912e-04	ci right 6.745961e-04	k: 520	n:840000
Cons ci ratio: 3.156957e-03	ci left: 6.463057e-01	ci right 6.483504e-01	k: 543756	n:840000
KS ci ratio: 2.247866e-01	ci left: 3.212441e-04	ci right 4.036940e-04	k: 303	n:840000
RSPH10B   840000 perm   461 sec   (1822 perm/sec)   p_kst 3.607143e-04   p_cons 6.473286e-01   p_joint 6.190476e-04

Joint ci ratio: 1.711931e-01	ci left: 5.636986e-04	ci right 6.703405e-04	k: 523	n:850000
Cons ci ratio: 3.138326e-03	ci left: 6.463126e-01	ci right 6.483452e-01	k: 550230	n:850000
KS ci ratio: 2.247871e-01	ci left: 3.174647e-04	ci right 3.989447e-04	k: 303	n:850000
RSPH10B   850000 perm   470 sec   (1810 perm/sec)   p_kst 3.564706e-04   p_cons 6.473294e-01   p_joint 6.152941e-04

Joint ci ratio: 1.750816e-01	ci left: 5.315578e-04	ci right 6.346450e-04	k: 500	n:860000
Cons ci ratio: 3.120371e-03	ci left: 6.462681e-01	ci right 6.482890e-01	k: 556660	n:860000
KS ci ratio: 2.236862e-01	ci left: 3.170657e-04	ci right 3.979898e-04	k: 306	n:860000
RSPH10B   860000 perm   478 sec   (1798 perm/sec)   p_kst 3.558140e-04   p_cons 6.472791e-01   p_joint 5.813953e-04

Joint ci ratio: 1.747335e-01	ci left: 5.276461e-04	ci right 6.297498e-04	k: 502	n:870000
Cons ci ratio: 3.102447e-03	ci left: 6.462650e-01	ci right 6.482742e-01	k: 563125	n:870000
KS ci ratio: 2.233231e-01	ci left: 3.145063e-04	ci right 3.946290e-04	k: 307	n:870000
RSPH10B   870000 perm   487 sec   (1787 perm/sec)   p_kst 3.528736e-04   p_cons 6.472701e-01   p_joint 5.770115e-04

Joint ci ratio: 1.738716e-01	ci left: 5.270840e-04	ci right 6.285230e-04	k: 507	n:880000
Cons ci ratio: 3.084260e-03	ci left: 6.463461e-01	ci right 6.483438e-01	k: 569664	n:880000
KS ci ratio: 2.222434e-01	ci left: 3.141512e-04	ci right 3.937436e-04	k: 310	n:880000
RSPH10B   880000 perm   496 sec   (1776 perm/sec)   p_kst 3.522727e-04   p_cons 6.473455e-01   p_joint 5.761364e-04

Joint ci ratio: 1.752584e-01	ci left: 5.125653e-04	ci right 6.120803e-04	k: 499	n:890000
Cons ci ratio: 3.067046e-03	ci left: 6.463276e-01	ci right 6.483141e-01	k: 576116	n:890000
KS ci ratio: 2.211792e-01	ci left: 3.138050e-04	ci right 3.928772e-04	k: 313	n:890000
RSPH10B   890000 perm   505 sec   (1764 perm/sec)   p_kst 3.516854e-04   p_cons 6.473213e-01   p_joint 5.606742e-04

Joint ci ratio: 1.745617e-01	ci left: 5.111200e-04	ci right 6.099183e-04	k: 503	n:900000
Cons ci ratio: 3.049812e-03	ci left: 6.463552e-01	ci right 6.483305e-01	k: 582609	n:900000
KS ci ratio: 2.197837e-01	ci left: 3.145173e-04	ci right 3.932013e-04	k: 317	n:900000
RSPH10B   900000 perm   514 sec   (1752 perm/sec)   p_kst 3.522222e-04   p_cons 6.473433e-01   p_joint 5.588889e-04

Joint ci ratio: 1.735318e-01	ci left: 5.118095e-04	ci right 6.100962e-04	k: 509	n:910000
Cons ci ratio: 3.032756e-03	ci left: 6.463986e-01	ci right 6.483631e-01	k: 589117	n:910000
KS ci ratio: 2.180758e-01	ci left: 3.162544e-04	ci right 3.946757e-04	k: 322	n:910000
RSPH10B   910000 perm   523 sec   (1740 perm/sec)   p_kst 3.538462e-04   p_cons 6.473813e-01   p_joint 5.593407e-04

Joint ci ratio: 1.730239e-01	ci left: 5.093658e-04	ci right 6.068669e-04	k: 512	n:920000
Cons ci ratio: 3.016853e-03	ci left: 6.463096e-01	ci right 6.482634e-01	k: 595504	n:920000
KS ci ratio: 2.174039e-01	ci left: 3.148722e-04	ci right 3.926781e-04	k: 324	n:920000
RSPH10B   920000 perm   532 sec   (1729 perm/sec)   p_kst 3.521739e-04   p_cons 6.472870e-01   p_joint 5.565217e-04

Joint ci ratio: 1.726879e-01	ci left: 5.059461e-04	ci right 6.025851e-04	k: 514	n:930000
Cons ci ratio: 3.000595e-03	ci left: 6.463139e-01	ci right 6.482572e-01	k: 601976	n:930000
KS ci ratio: 2.167383e-01	ci left: 3.135200e-04	ci right 3.907231e-04	k: 326	n:930000
RSPH10B   930000 perm   541 sec   (1718 perm/sec)   p_kst 3.505376e-04   p_cons 6.472860e-01   p_joint 5.526882e-04

Joint ci ratio: 1.710350e-01	ci left: 5.107445e-04	ci right 6.072699e-04	k: 524	n:940000
Cons ci ratio: 2.984375e-03	ci left: 6.463523e-01	ci right 6.482851e-01	k: 608480	n:940000
KS ci ratio: 2.154246e-01	ci left: 3.142098e-04	ci right 3.910517e-04	k: 330	n:940000
RSPH10B   940000 perm   551 sec   (1707 perm/sec)   p_kst 3.510638e-04   p_cons 6.473191e-01   p_joint 5.574468e-04

Joint ci ratio: 1.695872e-01	ci left: 5.144382e-04	ci right 6.107546e-04	k: 533	n:950000
Cons ci ratio: 2.968217e-03	ci left: 6.464204e-01	ci right 6.483429e-01	k: 615013	n:950000
KS ci ratio: 2.144550e-01	ci left: 3.138902e-04	ci right 3.902630e-04	k: 333	n:950000
RSPH10B   950000 perm   560 sec   (1696 perm/sec)   p_kst 3.505263e-04   p_cons 6.473821e-01   p_joint 5.610526e-04

Joint ci ratio: 1.687989e-01	ci left: 5.140673e-04	ci right 6.098213e-04	k: 538	n:960000
Cons ci ratio: 2.952480e-03	ci left: 6.464621e-01	ci right 6.483746e-01	k: 621522	n:960000
KS ci ratio: 2.134984e-01	ci left: 3.135780e-04	ci right 3.894900e-04	k: 336	n:960000
RSPH10B   960000 perm   570 sec   (1685 perm/sec)   p_kst 3.500000e-04   p_cons 6.474188e-01   p_joint 5.604167e-04

Joint ci ratio: 1.651603e-01	ci left: 5.324765e-04	ci right 6.293091e-04	k: 562	n:970000
Cons ci ratio: 2.937980e-03	ci left: 6.463492e-01	ci right 6.482520e-01	k: 627882	n:970000
KS ci ratio: 2.107028e-01	ci left: 3.191309e-04	ci right 3.952449e-04	k: 345	n:970000
RSPH10B   970000 perm   579 sec   (1674 perm/sec)   p_kst 3.556701e-04   p_cons 6.473010e-01   p_joint 5.793814e-04

Joint ci ratio: 1.638555e-01	ci left: 5.358487e-04	ci right 6.324489e-04	k: 571	n:980000
Cons ci ratio: 2.923650e-03	ci left: 6.462448e-01	ci right 6.481380e-01	k: 634248	n:980000
KS ci ratio: 2.088991e-01	ci left: 3.216753e-04	ci right 3.976554e-04	k: 351	n:980000
RSPH10B   980000 perm   589 sec   (1664 perm/sec)   p_kst 3.581633e-04   p_cons 6.471918e-01   p_joint 5.826531e-04

Joint ci ratio: 1.625812e-01	ci left: 5.391557e-04	ci right 6.355224e-04	k: 580	n:990000
Cons ci ratio: 2.909188e-03	ci left: 6.461961e-01	ci right 6.480798e-01	k: 640667	n:990000
KS ci ratio: 2.083083e-01	ci left: 3.203407e-04	ci right 3.957643e-04	k: 353	n:990000
RSPH10B   990000 perm   599 sec   (1653 perm/sec)   p_kst 3.565657e-04   p_cons 6.471384e-01   p_joint 5.858586e-04

Joint ci ratio: 1.638565e-01	ci left: 5.251315e-04	ci right 6.198002e-04	k: 571	n:1000000
Cons ci ratio: 2.894424e-03	ci left: 6.462295e-01	ci right 6.481036e-01	k: 647167	n:1000000
KS ci ratio: 2.071412e-01	ci left: 3.209293e-04	ci right 3.960144e-04	k: 357	n:1000000
RSPH10B   1000000 perm   609 sec   (1643 perm/sec)   p_kst 3.570000e-04   p_cons 6.471670e-01   p_joint 5.710000e-04

Joint ci ratio: 1.628629e-01	ci left: 5.265796e-04	ci right 6.208773e-04	k: 578	n:1010000
Cons ci ratio: 2.880170e-03	ci left: 6.462167e-01	ci right 6.480815e-01	k: 653621	n:1010000
KS ci ratio: 2.057096e-01	ci left: 3.224464e-04	ci right 3.972995e-04	k: 362	n:1010000
RSPH10B   1010000 perm   619 sec   (1633 perm/sec)   p_kst 3.584158e-04   p_cons 6.471495e-01   p_joint 5.722772e-04

Joint ci ratio: 1.624428e-01	ci left: 5.242384e-04	ci right 6.178512e-04	k: 581	n:1020000
Cons ci ratio: 2.866475e-03	ci left: 6.461482e-01	ci right 6.480039e-01	k: 660018	n:1020000
KS ci ratio: 2.051454e-01	ci left: 3.211450e-04	ci right 3.954659e-04	k: 364	n:1020000
RSPH10B   1020000 perm   628 sec   (1623 perm/sec)   p_kst 3.568627e-04   p_cons 6.470765e-01   p_joint 5.696078e-04

Joint ci ratio: 1.609287e-01	ci left: 5.293963e-04	ci right 6.229638e-04	k: 592	n:1030000
Cons ci ratio: 2.852276e-03	ci left: 6.461927e-01	ci right 6.480394e-01	k: 666530	n:1030000
KS ci ratio: 2.034795e-01	ci left: 3.235544e-04	ci right 3.977492e-04	k: 370	n:1030000
RSPH10B   1030000 perm   639 sec   (1613 perm/sec)   p_kst 3.592233e-04   p_cons 6.471165e-01   p_joint 5.747573e-04

Joint ci ratio: 1.599871e-01	ci left: 5.307665e-04	ci right 6.239746e-04	k: 599	n:1040000
Cons ci ratio: 2.838483e-03	ci left: 6.462047e-01	ci right 6.480425e-01	k: 673009	n:1040000
KS ci ratio: 2.018536e-01	ci left: 3.259198e-04	ci right 3.999863e-04	k: 376	n:1040000
RSPH10B   1040000 perm   648 sec   (1604 perm/sec)   p_kst 3.615385e-04   p_cons 6.471240e-01   p_joint 5.759615e-04

Joint ci ratio: 1.593247e-01	ci left: 5.302832e-04	ci right 6.229840e-04	k: 604	n:1050000
Cons ci ratio: 2.824488e-03	ci left: 6.462813e-01	ci right 6.481102e-01	k: 679556	n:1050000
KS ci ratio: 2.007911e-01	ci left: 3.264333e-04	ci right 4.001782e-04	k: 380	n:1050000
RSPH10B   1050000 perm   660 sec   (1592 perm/sec)   p_kst 3.619048e-04   p_cons 6.471962e-01   p_joint 5.752381e-04

Joint ci ratio: 1.565033e-01	ci left: 5.452155e-04	ci right 6.386805e-04	k: 626	n:1060000
Cons ci ratio: 2.811482e-03	ci left: 6.462291e-01	ci right 6.480494e-01	k: 685968	n:1060000
KS ci ratio: 2.002664e-01	ci left: 3.251458e-04	ci right 3.983844e-04	k: 382	n:1060000
RSPH10B   1060000 perm   670 sec   (1583 perm/sec)   p_kst 3.603774e-04   p_cons 6.471396e-01   p_joint 5.905660e-04

Joint ci ratio: 1.558831e-01	ci left: 5.446103e-04	ci right 6.375669e-04	k: 631	n:1070000
Cons ci ratio: 2.798453e-03	ci left: 6.462105e-01	ci right 6.480223e-01	k: 692415	n:1070000
KS ci ratio: 1.994867e-01	ci left: 3.247705e-04	ci right 3.976050e-04	k: 385	n:1070000
RSPH10B   1070000 perm   680 sec   (1574 perm/sec)   p_kst 3.598131e-04   p_cons 6.471168e-01   p_joint 5.897196e-04

Joint ci ratio: 1.555146e-01	ci left: 5.422371e-04	ci right 6.345495e-04	k: 634	n:1080000
Cons ci ratio: 2.785507e-03	ci left: 6.462081e-01	ci right 6.480115e-01	k: 698879	n:1080000
KS ci ratio: 1.989720e-01	ci left: 3.235228e-04	ci right 3.958676e-04	k: 387	n:1080000
RSPH10B   1080000 perm   690 sec   (1565 perm/sec)   p_kst 3.583333e-04   p_cons 6.471102e-01   p_joint 5.870370e-04

Joint ci ratio: 1.549060e-01	ci left: 5.416715e-04	ci right 6.334931e-04	k: 639	n:1090000
Cons ci ratio: 2.772757e-03	ci left: 6.462030e-01	ci right 6.479981e-01	k: 705340	n:1090000
KS ci ratio: 1.982073e-01	ci left: 3.231701e-04	ci right 3.951248e-04	k: 390	n:1090000
RSPH10B   1090000 perm   700 sec   (1557 perm/sec)   p_kst 3.577982e-04   p_cons 6.471009e-01   p_joint 5.862385e-04

Joint ci ratio: 1.544243e-01	ci left: 5.402428e-04	ci right 6.315111e-04	k: 643	n:1100000
Cons ci ratio: 2.759696e-03	ci left: 6.462780e-01	ci right 6.480649e-01	k: 711889	n:1100000
KS ci ratio: 1.977024e-01	ci left: 3.219603e-04	ci right 3.934410e-04	k: 392	n:1100000
RSPH10B   1100000 perm   710 sec   (1548 perm/sec)   p_kst 3.563636e-04   p_cons 6.471718e-01   p_joint 5.845455e-04

Joint ci ratio: 1.538284e-01	ci left: 5.397065e-04	ci right 6.305000e-04	k: 648	n:1110000
Cons ci ratio: 2.747468e-03	ci left: 6.462435e-01	ci right 6.480224e-01	k: 718318	n:1110000
KS ci ratio: 1.967039e-01	ci left: 3.224854e-04	ci right 3.936777e-04	k: 396	n:1110000
RSPH10B   1110000 perm   721 sec   (1540 perm/sec)   p_kst 3.567568e-04   p_cons 6.471333e-01   p_joint 5.837838e-04

Joint ci ratio: 1.530054e-01	ci left: 5.408978e-04	ci right 6.313602e-04	k: 655	n:1120000
Cons ci ratio: 2.735198e-03	ci left: 6.462436e-01	ci right 6.480145e-01	k: 724785	n:1120000
KS ci ratio: 1.957203e-01	ci left: 3.230021e-04	ci right 3.939094e-04	k: 400	n:1120000
RSPH10B   1120000 perm   731 sec   (1531 perm/sec)   p_kst 3.571429e-04   p_cons 6.471295e-01   p_joint 5.848214e-04

Joint ci ratio: 1.526569e-01	ci left: 5.386644e-04	ci right 6.285293e-04	k: 658	n:1130000
Cons ci ratio: 2.722564e-03	ci left: 6.463323e-01	ci right 6.480952e-01	k: 731352	n:1130000
KS ci ratio: 1.957206e-01	ci left: 3.201436e-04	ci right 3.904235e-04	k: 400	n:1130000
RSPH10B   1130000 perm   742 sec   (1523 perm/sec)   p_kst 3.539823e-04   p_cons 6.472142e-01   p_joint 5.823009e-04

Joint ci ratio: 1.517385e-01	ci left: 5.406896e-04	ci right 6.303005e-04	k: 666	n:1140000
Cons ci ratio: 2.710202e-03	ci left: 6.464028e-01	ci right 6.481579e-01	k: 737900	n:1140000
KS ci ratio: 1.940341e-01	ci left: 3.231761e-04	ci right 3.934383e-04	k: 407	n:1140000
RSPH10B   1140000 perm   753 sec   (1514 perm/sec)   p_kst 3.570175e-04   p_cons 6.472807e-01   p_joint 5.842105e-04

Joint ci ratio: 1.510606e-01	ci left: 5.410077e-04	ci right 6.302345e-04	k: 672	n:1150000
Cons ci ratio: 2.698504e-03	ci left: 6.463876e-01	ci right 6.481351e-01	k: 744351	n:1150000
KS ci ratio: 1.935604e-01	ci left: 3.220206e-04	ci right 3.918405e-04	k: 409	n:1150000
RSPH10B   1150000 perm   764 sec   (1505 perm/sec)   p_kst 3.556522e-04   p_cons 6.472617e-01   p_joint 5.843478e-04

Joint ci ratio: 1.503917e-01	ci left: 5.413212e-04	ci right 6.301688e-04	k: 678	n:1160000
Cons ci ratio: 2.686846e-03	ci left: 6.463917e-01	ci right 6.481317e-01	k: 750824	n:1160000
KS ci ratio: 1.926230e-01	ci left: 3.225262e-04	ci right 3.920773e-04	k: 413	n:1160000
RSPH10B   1160000 perm   775 sec   (1496 perm/sec)   p_kst 3.560345e-04   p_cons 6.472621e-01   p_joint 5.844828e-04

Joint ci ratio: 1.495133e-01	ci left: 5.432756e-04	ci right 6.318766e-04	k: 686	n:1170000
Cons ci ratio: 2.675372e-03	ci left: 6.463898e-01	ci right 6.481223e-01	k: 757290	n:1170000
KS ci ratio: 1.914702e-01	ci left: 3.238376e-04	ci right 3.932049e-04	k: 418	n:1170000
RSPH10B   1170000 perm   786 sec   (1488 perm/sec)   p_kst 3.572650e-04   p_cons 6.472564e-01   p_joint 5.863248e-04

Joint ci ratio: 1.659075e-01	ci left: 4.336501e-04	ci right 5.129031e-04	k: 557	n:1180000
Cons ci ratio: 2.664074e-03	ci left: 6.463828e-01	ci right 6.481080e-01	k: 763750	n:1180000
KS ci ratio: 1.905627e-01	ci left: 3.243210e-04	ci right 3.934244e-04	k: 422	n:1180000
RSPH10B   1180000 perm   797 sec   (1480 perm/sec)   p_kst 3.576271e-04   p_cons 6.472458e-01   p_joint 4.720339e-04

Joint ci ratio: 1.656112e-01	ci left: 4.316169e-04	ci right 5.103434e-04	k: 559	n:1190000
Cons ci ratio: 2.652781e-03	ci left: 6.463995e-01	ci right 6.481174e-01	k: 770238	n:1190000
KS ci ratio: 1.905630e-01	ci left: 3.215955e-04	ci right 3.901184e-04	k: 422	n:1190000
RSPH10B   1190000 perm   809 sec   (1472 perm/sec)   p_kst 3.546218e-04   p_cons 6.472588e-01   p_joint 4.697479e-04

Joint ci ratio: 1.642959e-01	ci left: 4.352105e-04	ci right 5.138998e-04	k: 568	n:1200000
Cons ci ratio: 2.642397e-03	ci left: 6.462834e-01	ci right 6.479942e-01	k: 776567	n:1200000
KS ci ratio: 1.898908e-01	ci left: 3.212965e-04	ci right 3.894863e-04	k: 425	n:1200000
RSPH10B   1200000 perm   820 sec   (1463 perm/sec)   p_kst 3.541667e-04   p_cons 6.471392e-01   p_joint 4.733333e-04

Joint ci ratio: 1.637215e-01	ci left: 4.347839e-04	ci right 5.130940e-04	k: 572	n:1210000
Cons ci ratio: 2.631305e-03	ci left: 6.463131e-01	ci right 6.480168e-01	k: 783070	n:1210000
KS ci ratio: 1.885673e-01	ci left: 3.233650e-04	ci right 3.914607e-04	k: 431	n:1210000
RSPH10B   1210000 perm   832 sec   (1455 perm/sec)   p_kst 3.561983e-04   p_cons 6.471653e-01   p_joint 4.727273e-04

Joint ci ratio: 1.669598e-01	ci left: 4.139330e-04	ci right 4.901106e-04	k: 550	n:1220000
Cons ci ratio: 2.620958e-03	ci left: 6.462365e-01	ci right 6.479333e-01	k: 789444	n:1220000
KS ci ratio: 1.877003e-01	ci left: 3.238387e-04	ci right 3.916849e-04	k: 435	n:1220000
RSPH10B   1220000 perm   843 sec   (1447 perm/sec)   p_kst 3.565574e-04   p_cons 6.470852e-01   p_joint 4.508197e-04

Joint ci ratio: 1.666578e-01	ci left: 4.121258e-04	ci right 4.878199e-04	k: 552	n:1230000
Cons ci ratio: 2.610225e-03	ci left: 6.462499e-01	ci right 6.479397e-01	k: 795927	n:1230000
KS ci ratio: 1.874856e-01	ci left: 3.219807e-04	ci right 3.893517e-04	k: 436	n:1230000
RSPH10B   1230000 perm   855 sec   (1439 perm/sec)   p_kst 3.544715e-04   p_cons 6.470951e-01   p_joint 4.487805e-04

Joint ci ratio: 1.678774e-01	ci left: 4.026205e-04	ci right 4.771646e-04	k: 544	n:1240000
Cons ci ratio: 2.599885e-03	ci left: 6.462170e-01	ci right 6.479001e-01	k: 802353	n:1240000
KS ci ratio: 1.860016e-01	ci left: 3.247654e-04	ci right 3.921205e-04	k: 443	n:1240000
RSPH10B   1240000 perm   866 sec   (1431 perm/sec)   p_kst 3.572581e-04   p_cons 6.470589e-01   p_joint 4.387097e-04

Joint ci ratio: 1.672647e-01	ci left: 4.024653e-04	ci right 4.766814e-04	k: 548	n:1250000
Cons ci ratio: 2.589472e-03	ci left: 6.462191e-01	ci right 6.478954e-01	k: 808822	n:1250000
KS ci ratio: 1.851693e-01	ci left: 3.252186e-04	ci right 3.923320e-04	k: 447	n:1250000
RSPH10B   1250000 perm   879 sec   (1423 perm/sec)   p_kst 3.576000e-04   p_cons 6.470576e-01   p_joint 4.384000e-04

Joint ci ratio: 1.669610e-01	ci left: 4.007920e-04	ci right 4.745518e-04	k: 550	n:1260000
Cons ci ratio: 2.579210e-03	ci left: 6.462164e-01	ci right 6.478861e-01	k: 815285	n:1260000
KS ci ratio: 1.849632e-01	ci left: 3.233944e-04	ci right 3.900487e-04	k: 448	n:1260000
RSPH10B   1260000 perm   890 sec   (1415 perm/sec)   p_kst 3.555556e-04   p_cons 6.470516e-01   p_joint 4.365079e-04

Joint ci ratio: 1.662086e-01	ci left: 4.014091e-04	ci right 4.749162e-04	k: 555	n:1270000
Cons ci ratio: 2.569126e-03	ci left: 6.462036e-01	ci right 6.478666e-01	k: 821735	n:1270000
KS ci ratio: 1.839418e-01	ci left: 3.246032e-04	ci right 3.910960e-04	k: 453	n:1270000
RSPH10B   1270000 perm   902 sec   (1408 perm/sec)   p_kst 3.566929e-04   p_cons 6.470354e-01   p_joint 4.370079e-04

Joint ci ratio: 1.656139e-01	ci left: 4.012683e-04	ci right 4.744606e-04	k: 559	n:1280000
Cons ci ratio: 2.559274e-03	ci left: 6.461706e-01	ci right 6.478272e-01	k: 828159	n:1280000
KS ci ratio: 1.829371e-01	ci left: 3.257941e-04	ci right 3.921259e-04	k: 458	n:1280000
RSPH10B   1280000 perm   913 sec   (1402 perm/sec)   p_kst 3.578125e-04   p_cons 6.469992e-01   p_joint 4.367187e-04

Joint ci ratio: 1.651722e-01	ci left: 4.003870e-04	ci right 4.732043e-04	k: 562	n:1290000
Cons ci ratio: 2.549279e-03	ci left: 6.461839e-01	ci right 6.478340e-01	k: 834642	n:1290000
KS ci ratio: 1.823422e-01	ci left: 3.254879e-04	ci right 3.915180e-04	k: 461	n:1290000
RSPH10B   1290000 perm   925 sec   (1394 perm/sec)   p_kst 3.573643e-04   p_cons 6.470093e-01   p_joint 4.356589e-04

Joint ci ratio: 1.645886e-01	ci left: 4.002571e-04	ci right 4.727681e-04	k: 566	n:1300000
Cons ci ratio: 2.539780e-03	ci left: 6.461285e-01	ci right 6.477724e-01	k: 841036	n:1300000
KS ci ratio: 1.817531e-01	ci left: 3.251866e-04	ci right 3.909191e-04	k: 464	n:1300000
RSPH10B   1300000 perm   938 sec   (1386 perm/sec)   p_kst 3.569231e-04   p_cons 6.469508e-01   p_joint 4.353846e-04

Joint ci ratio: 1.634394e-01	ci left: 4.030579e-04	ci right 4.755164e-04	k: 574	n:1310000
Cons ci ratio: 2.530374e-03	ci left: 6.460763e-01	ci right 6.477139e-01	k: 847433	n:1310000
KS ci ratio: 1.804000e-01	ci left: 3.278056e-04	ci right 3.935203e-04	k: 471	n:1310000
RSPH10B   1310000 perm   950 sec   (1379 perm/sec)   p_kst 3.595420e-04   p_cons 6.468954e-01   p_joint 4.381679e-04

Joint ci ratio: 1.628738e-01	ci left: 4.029110e-04	ci right 4.750680e-04	k: 578	n:1320000
Cons ci ratio: 2.520738e-03	ci left: 6.460855e-01	ci right 6.477169e-01	k: 853910	n:1320000
KS ci ratio: 1.798295e-01	ci left: 3.274925e-04	ci right 3.929142e-04	k: 474	n:1320000
RSPH10B   1320000 perm   962 sec   (1372 perm/sec)   p_kst 3.590909e-04   p_cons 6.469015e-01   p_joint 4.378788e-04

Joint ci ratio: 1.621751e-01	ci left: 4.034881e-04	ci right 4.754082e-04	k: 583	n:1330000
Cons ci ratio: 2.510942e-03	ci left: 6.461435e-01	ci right 6.477687e-01	k: 860452	n:1330000
KS ci ratio: 1.790770e-01	ci left: 3.279026e-04	ci right 3.931024e-04	k: 478	n:1330000
RSPH10B   1330000 perm   974 sec   (1365 perm/sec)   p_kst 3.593985e-04   p_cons 6.469564e-01   p_joint 4.383459e-04

Joint ci ratio: 1.617602e-01	ci left: 4.026251e-04	ci right 4.741898e-04	k: 586	n:1340000
Cons ci ratio: 2.501402e-03	ci left: 6.461745e-01	ci right 6.477936e-01	k: 866959	n:1340000
KS ci ratio: 1.785189e-01	ci left: 3.275942e-04	ci right 3.925077e-04	k: 481	n:1340000
RSPH10B   1340000 perm   987 sec   (1358 perm/sec)   p_kst 3.589552e-04   p_cons 6.469843e-01   p_joint 4.373134e-04

Joint ci ratio: 1.609397e-01	ci left: 4.039077e-04	ci right 4.753010e-04	k: 592	n:1350000
Cons ci ratio: 2.491893e-03	ci left: 6.462191e-01	ci right 6.478321e-01	k: 873485	n:1350000
KS ci ratio: 1.777827e-01	ci left: 3.279984e-04	ci right 3.926952e-04	k: 485	n:1350000
RSPH10B   1350000 perm   999 sec   (1351 perm/sec)   p_kst 3.592593e-04   p_cons 6.470259e-01   p_joint 4.385185e-04

Joint ci ratio: 1.605342e-01	ci left: 4.030549e-04	ci right 4.741007e-04	k: 595	n:1360000
Cons ci ratio: 2.483116e-03	ci left: 6.461483e-01	ci right 6.477555e-01	k: 879855	n:1360000
KS ci ratio: 1.768751e-01	ci left: 3.291000e-04	ci right 3.936472e-04	k: 490	n:1360000
RSPH10B   1360000 perm   1012 sec   (1344 perm/sec)   p_kst 3.602941e-04   p_cons 6.469522e-01   p_joint 4.375000e-04

Joint ci ratio: 1.599982e-01	ci left: 4.029155e-04	ci right 4.736769e-04	k: 599	n:1370000
Cons ci ratio: 2.474407e-03	ci left: 6.460830e-01	ci right 6.476843e-01	k: 886231	n:1370000
KS ci ratio: 1.763373e-01	ci left: 3.287907e-04	ci right 3.930604e-04	k: 493	n:1370000
RSPH10B   1370000 perm   1024 sec   (1338 perm/sec)   p_kst 3.598540e-04   p_cons 6.468839e-01   p_joint 4.372263e-04

Joint ci ratio: 1.595998e-01	ci left: 4.020828e-04	ci right 4.725052e-04	k: 602	n:1380000
Cons ci ratio: 2.465510e-03	ci left: 6.460700e-01	ci right 6.476656e-01	k: 892678	n:1380000
KS ci ratio: 1.759815e-01	ci left: 3.277936e-04	ci right 3.917252e-04	k: 495	n:1380000
RSPH10B   1380000 perm   1037 sec   (1331 perm/sec)   p_kst 3.586957e-04   p_cons 6.468681e-01   p_joint 4.362319e-04

Joint ci ratio: 1.593359e-01	ci left: 4.005715e-04	ci right 4.706022e-04	k: 604	n:1390000
Cons ci ratio: 2.456242e-03	ci left: 6.461444e-01	ci right 6.477341e-01	k: 899246	n:1390000
KS ci ratio: 1.758045e-01	ci left: 3.261231e-04	ci right 3.896582e-04	k: 496	n:1390000
RSPH10B   1390000 perm   1049 sec   (1325 perm/sec)   p_kst 3.568345e-04   p_cons 6.469396e-01   p_joint 4.345324e-04

Joint ci ratio: 1.593362e-01	ci left: 3.977102e-04	ci right 4.672408e-04	k: 604	n:1400000
Cons ci ratio: 2.447597e-03	ci left: 6.461205e-01	ci right 6.477046e-01	k: 905678	n:1400000
KS ci ratio: 1.754520e-01	ci left: 3.251594e-04	ci right 3.883662e-04	k: 498	n:1400000
RSPH10B   1400000 perm   1062 sec   (1319 perm/sec)   p_kst 3.557143e-04   p_cons 6.469129e-01   p_joint 4.314286e-04

Joint ci ratio: 1.589427e-01	ci left: 3.969325e-04	ci right 4.661393e-04	k: 607	n:1410000
Cons ci ratio: 2.438861e-03	ci left: 6.461311e-01	ci right 6.477095e-01	k: 912158	n:1410000
KS ci ratio: 1.751015e-01	ci left: 3.242095e-04	ci right 3.870925e-04	k: 500	n:1410000
RSPH10B   1410000 perm   1074 sec   (1312 perm/sec)   p_kst 3.546099e-04   p_cons 6.469206e-01   p_joint 4.304965e-04

Joint ci ratio: 1.585520e-01	ci left: 3.961660e-04	ci right 4.650532e-04	k: 610	n:1420000
Cons ci ratio: 2.430528e-03	ci left: 6.460830e-01	ci right 6.476559e-01	k: 918555	n:1420000
KS ci ratio: 1.744066e-01	ci left: 3.246200e-04	ci right 3.873065e-04	k: 504	n:1420000
RSPH10B   1420000 perm   1088 sec   (1305 perm/sec)   p_kst 3.549296e-04   p_cons 6.468697e-01   p_joint 4.295775e-04

Joint ci ratio: 1.581643e-01	ci left: 3.954103e-04	ci right 4.639821e-04	k: 613	n:1430000
Cons ci ratio: 2.422044e-03	ci left: 6.460803e-01	ci right 6.476477e-01	k: 925016	n:1430000
KS ci ratio: 1.735495e-01	ci left: 3.256942e-04	ci right 3.882466e-04	k: 509	n:1430000
RSPH10B   1430000 perm   1101 sec   (1299 perm/sec)   p_kst 3.559441e-04   p_cons 6.468643e-01   p_joint 4.286713e-04

Joint ci ratio: 1.573970e-01	ci left: 3.966666e-04	ci right 4.650910e-04	k: 619	n:1440000
Cons ci ratio: 2.413603e-03	ci left: 6.460861e-01	ci right 6.476480e-01	k: 931489	n:1440000
KS ci ratio: 1.727049e-01	ci left: 3.267542e-04	ci right 3.891730e-04	k: 514	n:1440000
RSPH10B   1440000 perm   1114 sec   (1292 perm/sec)   p_kst 3.569444e-04   p_cons 6.468674e-01   p_joint 4.298611e-04

Joint ci ratio: 1.568918e-01	ci left: 3.965811e-04	ci right 4.647505e-04	k: 623	n:1450000
Cons ci ratio: 2.405301e-03	ci left: 6.460821e-01	ci right 6.476387e-01	k: 937948	n:1450000
KS ci ratio: 1.723706e-01	ci left: 3.258205e-04	ci right 3.879279e-04	k: 516	n:1450000
RSPH10B   1450000 perm   1127 sec   (1286 perm/sec)   p_kst 3.558621e-04   p_cons 6.468607e-01   p_joint 4.296552e-04

Joint ci ratio: 1.560190e-01	ci left: 3.984716e-04	ci right 4.665493e-04	k: 630	n:1460000
Cons ci ratio: 2.396887e-03	ci left: 6.461159e-01	ci right 6.476671e-01	k: 944462	n:1460000
KS ci ratio: 1.713789e-01	ci left: 3.275217e-04	ci right 3.895570e-04	k: 522	n:1460000
RSPH10B   1460000 perm   1141 sec   (1280 perm/sec)   p_kst 3.575342e-04   p_cons 6.468918e-01   p_joint 4.315068e-04

Joint ci ratio: 1.556495e-01	ci left: 3.977222e-04	ci right 4.654959e-04	k: 633	n:1470000
Cons ci ratio: 2.388894e-03	ci left: 6.460853e-01	ci right 6.476312e-01	k: 950882	n:1470000
KS ci ratio: 1.710522e-01	ci left: 3.265959e-04	ci right 3.883257e-04	k: 524	n:1470000
RSPH10B   1470000 perm   1154 sec   (1274 perm/sec)   p_kst 3.564626e-04   p_cons 6.468585e-01   p_joint 4.306122e-04

Joint ci ratio: 1.550393e-01	ci left: 3.982819e-04	ci right 4.658602e-04	k: 638	n:1480000
Cons ci ratio: 2.380815e-03	ci left: 6.460868e-01	ci right 6.476275e-01	k: 957349	n:1480000
KS ci ratio: 1.704043e-01	ci left: 3.269764e-04	ci right 3.885200e-04	k: 528	n:1480000
RSPH10B   1480000 perm   1167 sec   (1268 perm/sec)   p_kst 3.567568e-04   p_cons 6.468574e-01   p_joint 4.310811e-04

Joint ci ratio: 1.546767e-01	ci left: 3.975443e-04	ci right 4.648250e-04	k: 641	n:1490000
Cons ci ratio: 2.373006e-03	ci left: 6.460521e-01	ci right 6.475876e-01	k: 963762	n:1490000
KS ci ratio: 1.700831e-01	ci left: 3.260670e-04	ci right 3.873119e-04	k: 530	n:1490000
RSPH10B   1490000 perm   1181 sec   (1262 perm/sec)   p_kst 3.557047e-04   p_cons 6.468201e-01   p_joint 4.302013e-04

Joint ci ratio: 1.539588e-01	ci left: 3.987396e-04	ci right 4.658805e-04	k: 647	n:1500000
Cons ci ratio: 2.365015e-03	ci left: 6.460678e-01	ci right 6.475983e-01	k: 970250	n:1500000
KS ci ratio: 1.696047e-01	ci left: 3.258082e-04	ci right 3.868148e-04	k: 533	n:1500000
RSPH10B   1500000 perm   1194 sec   (1256 perm/sec)   p_kst 3.553333e-04   p_cons 6.468333e-01   p_joint 4.313333e-04

Joint ci ratio: 1.529004e-01	ci left: 4.018304e-04	ci right 4.689841e-04	k: 656	n:1510000
Cons ci ratio: 2.357438e-03	ci left: 6.460185e-01	ci right 6.475439e-01	k: 976640	n:1510000
KS ci ratio: 1.686597e-01	ci left: 3.274558e-04	ci right 3.883946e-04	k: 539	n:1510000
RSPH10B   1510000 perm   1208 sec   (1250 perm/sec)   p_kst 3.569536e-04   p_cons 6.467815e-01   p_joint 4.344371e-04

Joint ci ratio: 1.523219e-01	ci left: 4.023506e-04	ci right 4.693136e-04	k: 661	n:1520000
Cons ci ratio: 2.349572e-03	ci left: 6.460402e-01	ci right 6.475605e-01	k: 983137	n:1520000
KS ci ratio: 1.677303e-01	ci left: 3.290827e-04	ci right 3.899527e-04	k: 545	n:1520000
RSPH10B   1520000 perm   1222 sec   (1244 perm/sec)   p_kst 3.585526e-04   p_cons 6.468007e-01   p_joint 4.348684e-04

Joint ci ratio: 1.520924e-01	ci left: 4.009783e-04	ci right 4.676032e-04	k: 663	n:1530000
Cons ci ratio: 2.341898e-03	ci left: 6.460394e-01	ci right 6.475548e-01	k: 989600	n:1530000
KS ci ratio: 1.675771e-01	ci left: 3.275580e-04	ci right 3.880850e-04	k: 546	n:1530000
RSPH10B   1530000 perm   1236 sec   (1238 perm/sec)   p_kst 3.568627e-04   p_cons 6.467974e-01   p_joint 4.333333e-04

Joint ci ratio: 1.519782e-01	ci left: 3.989991e-04	ci right 4.652409e-04	k: 664	n:1540000
Cons ci ratio: 2.334099e-03	ci left: 6.460776e-01	ci right 6.475880e-01	k: 996123	n:1540000
KS ci ratio: 1.669677e-01	ci left: 3.279197e-04	ci right 3.882710e-04	k: 550	n:1540000
RSPH10B   1540000 perm   1250 sec   (1232 perm/sec)   p_kst 3.571429e-04   p_cons 6.468331e-01   p_joint 4.311688e-04

Joint ci ratio: 1.514100e-01	ci left: 3.995283e-04	ci right 4.655875e-04	k: 669	n:1550000
Cons ci ratio: 2.326756e-03	ci left: 6.460411e-01	ci right 6.475467e-01	k: 1002531	n:1550000
KS ci ratio: 1.666656e-01	ci left: 3.270405e-04	ci right 3.871102e-04	k: 552	n:1550000
RSPH10B   1550000 perm   1263 sec   (1227 perm/sec)   p_kst 3.561290e-04   p_cons 6.467942e-01   p_joint 4.316129e-04

Joint ci ratio: 1.512973e-01	ci left: 3.975840e-04	ci right 4.632682e-04	k: 670	n:1560000
Cons ci ratio: 2.319485e-03	ci left: 6.460045e-01	ci right 6.475052e-01	k: 1008938	n:1560000
KS ci ratio: 1.665152e-01	ci left: 3.255584e-04	ci right 3.852965e-04	k: 553	n:1560000
RSPH10B   1560000 perm   1277 sec   (1221 perm/sec)   p_kst 3.544872e-04   p_cons 6.467551e-01   p_joint 4.294872e-04

Joint ci ratio: 1.509603e-01	ci left: 3.968901e-04	ci right 4.623005e-04	k: 673	n:1570000
Cons ci ratio: 2.312091e-03	ci left: 6.460059e-01	ci right 6.475019e-01	k: 1015404	n:1570000
KS ci ratio: 1.654729e-01	ci left: 3.277582e-04	ci right 3.874860e-04	k: 560	n:1570000
RSPH10B   1570000 perm   1292 sec   (1216 perm/sec)   p_kst 3.566879e-04   p_cons 6.467541e-01   p_joint 4.286624e-04

Joint ci ratio: 1.505143e-01	ci left: 3.968143e-04	ci right 4.620016e-04	k: 677	n:1580000
Cons ci ratio: 2.304844e-03	ci left: 6.459921e-01	ci right 6.474833e-01	k: 1021846	n:1580000
KS ci ratio: 1.651788e-01	ci left: 3.268972e-04	ci right 3.863517e-04	k: 562	n:1580000
RSPH10B   1580000 perm   1306 sec   (1210 perm/sec)   p_kst 3.556962e-04   p_cons 6.467380e-01   p_joint 4.284810e-04

Joint ci ratio: 1.500723e-01	ci left: 3.967398e-04	ci right 4.617062e-04	k: 681	n:1590000
Cons ci ratio: 2.297472e-03	ci left: 6.460169e-01	ci right 6.475034e-01	k: 1028349	n:1590000
KS ci ratio: 1.644501e-01	ci left: 3.278562e-04	ci right 3.871961e-04	k: 567	n:1590000
RSPH10B   1590000 perm   1320 sec   (1204 perm/sec)   p_kst 3.566038e-04   p_cons 6.467604e-01   p_joint 4.283019e-04

Joint ci ratio: 1.497434e-01	ci left: 3.960648e-04	ci right 4.607659e-04	k: 684	n:1600000
Cons ci ratio: 2.290296e-03	ci left: 6.460163e-01	ci right 6.474982e-01	k: 1034812	n:1600000
KS ci ratio: 1.638741e-01	ci left: 3.282044e-04	ci right 3.873787e-04	k: 571	n:1600000
RSPH10B   1600000 perm   1335 sec   (1199 perm/sec)   p_kst 3.568750e-04   p_cons 6.467575e-01   p_joint 4.275000e-04

Joint ci ratio: 1.489840e-01	ci left: 3.977901e-04	ci right 4.624141e-04	k: 691	n:1610000
Cons ci ratio: 2.283161e-03	ci left: 6.460207e-01	ci right 6.474980e-01	k: 1041283	n:1610000
KS ci ratio: 1.633041e-01	ci left: 3.285486e-04	ci right 3.875587e-04	k: 575	n:1610000
RSPH10B   1610000 perm   1349 sec   (1194 perm/sec)   p_kst 3.571429e-04   p_cons 6.467596e-01   p_joint 4.291925e-04

Joint ci ratio: 1.486621e-01	ci left: 3.971175e-04	ci right 4.614805e-04	k: 694	n:1620000
Cons ci ratio: 2.276241e-03	ci left: 6.459955e-01	ci right 6.474682e-01	k: 1047706	n:1620000
KS ci ratio: 1.630214e-01	ci left: 3.277047e-04	ci right 3.864513e-04	k: 577	n:1620000
RSPH10B   1620000 perm   1363 sec   (1188 perm/sec)   p_kst 3.561728e-04   p_cons 6.467321e-01   p_joint 4.283951e-04

Joint ci ratio: 1.482362e-01	ci left: 3.970441e-04	ci right 4.611944e-04	k: 698	n:1630000
Cons ci ratio: 2.269273e-03	ci left: 6.459926e-01	ci right 6.474608e-01	k: 1054165	n:1630000
KS ci ratio: 1.624602e-01	ci left: 3.280483e-04	ci right 3.866343e-04	k: 581	n:1630000
RSPH10B   1630000 perm   1378 sec   (1183 perm/sec)   p_kst 3.564417e-04   p_cons 6.467270e-01   p_joint 4.282209e-04

Joint ci ratio: 1.444606e-01	ci left: 4.163584e-04	ci right 4.817683e-04	k: 735	n:1640000
Cons ci ratio: 2.262134e-03	ci left: 6.460374e-01	ci right 6.475011e-01	k: 1060702	n:1640000
KS ci ratio: 1.619047e-01	ci left: 3.283881e-04	ci right 3.868147e-04	k: 585	n:1640000
RSPH10B   1640000 perm   1392 sec   (1178 perm/sec)   p_kst 3.567073e-04   p_cons 6.467695e-01   p_joint 4.481707e-04

Joint ci ratio: 1.440697e-01	ci left: 4.161717e-04	ci right 4.813601e-04	k: 739	n:1650000
Cons ci ratio: 2.255578e-03	ci left: 6.459768e-01	ci right 6.474360e-01	k: 1067066	n:1650000
KS ci ratio: 1.613549e-01	ci left: 3.287240e-04	ci right 3.869926e-04	k: 589	n:1650000
RSPH10B   1650000 perm   1407 sec   (1173 perm/sec)   p_kst 3.569697e-04   p_cons 6.467067e-01   p_joint 4.478788e-04

Joint ci ratio: 1.435854e-01	ci left: 4.165683e-04	ci right 4.815807e-04	k: 744	n:1660000
Cons ci ratio: 2.248899e-03	ci left: 6.459536e-01	ci right 6.474085e-01	k: 1073491	n:1660000
KS ci ratio: 1.606755e-01	ci left: 3.296344e-04	ci right 3.877946e-04	k: 594	n:1660000
RSPH10B   1660000 perm   1422 sec   (1167 perm/sec)   p_kst 3.578313e-04   p_cons 6.466813e-01   p_joint 4.481928e-04

Joint ci ratio: 1.432015e-01	ci left: 4.163832e-04	ci right 4.811781e-04	k: 748	n:1670000
Cons ci ratio: 2.242252e-03	ci left: 6.459361e-01	ci right 6.473867e-01	k: 1079925	n:1670000
KS ci ratio: 1.597384e-01	ci left: 3.316842e-04	ci right 3.898319e-04	k: 601	n:1670000
RSPH10B   1670000 perm   1437 sec   (1162 perm/sec)   p_kst 3.598802e-04   p_cons 6.466617e-01   p_joint 4.479042e-04

Joint ci ratio: 1.427259e-01	ci left: 4.167744e-04	ci right 4.813965e-04	k: 753	n:1680000
Cons ci ratio: 2.235556e-03	ci left: 6.459409e-01	ci right 6.473871e-01	k: 1086396	n:1680000
KS ci ratio: 1.589482e-01	ci left: 3.331389e-04	ci right 3.912252e-04	k: 607	n:1680000
RSPH10B   1680000 perm   1452 sec   (1157 perm/sec)   p_kst 3.613095e-04   p_cons 6.466643e-01   p_joint 4.482143e-04

Joint ci ratio: 1.421613e-01	ci left: 4.177321e-04	ci right 4.822247e-04	k: 759	n:1690000
Cons ci ratio: 2.228859e-03	ci left: 6.459581e-01	ci right 6.474000e-01	k: 1092888	n:1690000
KS ci ratio: 1.584279e-01	ci left: 3.334406e-04	ci right 3.913710e-04	k: 611	n:1690000
RSPH10B   1690000 perm   1467 sec   (1152 perm/sec)   p_kst 3.615385e-04   p_cons 6.466793e-01   p_joint 4.491124e-04

Joint ci ratio: 1.414188e-01	ci left: 4.198138e-04	ci right 4.842608e-04	k: 767	n:1700000
Cons ci ratio: 2.222536e-03	ci left: 6.459103e-01	ci right 6.473480e-01	k: 1099270	n:1700000
KS ci ratio: 1.577846e-01	ci left: 3.343040e-04	ci right 3.921263e-04	k: 616	n:1700000
RSPH10B   1700000 perm   1482 sec   (1147 perm/sec)   p_kst 3.623529e-04   p_cons 6.466294e-01   p_joint 4.511765e-04

Joint ci ratio: 1.409607e-01	ci left: 4.201795e-04	ci right 4.844561e-04	k: 772	n:1710000
Cons ci ratio: 2.216148e-03	ci left: 6.458877e-01	ci right 6.473212e-01	k: 1105694	n:1710000
KS ci ratio: 1.572756e-01	ci left: 3.345960e-04	ci right 3.922645e-04	k: 620	n:1710000
RSPH10B   1710000 perm   1497 sec   (1142 perm/sec)   p_kst 3.625731e-04   p_cons 6.466047e-01   p_joint 4.514620e-04

Joint ci ratio: 1.435865e-01	ci left: 4.020366e-04	ci right 4.647817e-04	k: 744	n:1720000
Cons ci ratio: 2.209621e-03	ci left: 6.459054e-01	ci right 6.473348e-01	k: 1112187	n:1720000
KS ci ratio: 1.565211e-01	ci left: 3.360021e-04	ci right 3.936091e-04	k: 626	n:1720000
RSPH10B   1720000 perm   1512 sec   (1137 perm/sec)   p_kst 3.639535e-04   p_cons 6.466203e-01   p_joint 4.325581e-04

Joint ci ratio: 1.430117e-01	ci left: 4.030566e-04	ci right 4.656875e-04	k: 750	n:1730000
Cons ci ratio: 2.203371e-03	ci left: 6.458773e-01	ci right 6.473025e-01	k: 1118601	n:1730000
KS ci ratio: 1.561481e-01	ci left: 3.357261e-04	ci right 3.931358e-04	k: 629	n:1730000
RSPH10B   1730000 perm   1528 sec   (1132 perm/sec)   p_kst 3.635838e-04   p_cons 6.465902e-01   p_joint 4.335260e-04

Joint ci ratio: 1.427270e-01	ci left: 4.024027e-04	ci right 4.647969e-04	k: 753	n:1740000
Cons ci ratio: 2.197110e-03	ci left: 6.458627e-01	ci right 6.472839e-01	k: 1125038	n:1740000
KS ci ratio: 1.557776e-01	ci left: 3.354535e-04	ci right 3.926677e-04	k: 632	n:1740000
RSPH10B   1740000 perm   1543 sec   (1127 perm/sec)   p_kst 3.632184e-04   p_cons 6.465736e-01   p_joint 4.327586e-04

Joint ci ratio: 1.423499e-01	ci left: 4.023074e-04	ci right 4.645081e-04	k: 757	n:1750000
Cons ci ratio: 2.190795e-03	ci left: 6.458707e-01	ci right 6.472877e-01	k: 1131514	n:1750000
KS ci ratio: 1.554098e-01	ci left: 3.351842e-04	ci right 3.922049e-04	k: 635	n:1750000
RSPH10B   1750000 perm   1559 sec   (1123 perm/sec)   p_kst 3.628571e-04   p_cons 6.465794e-01   p_joint 4.325714e-04

Joint ci ratio: 1.415121e-01	ci left: 4.049537e-04	ci right 4.671639e-04	k: 766	n:1760000
Cons ci ratio: 2.184342e-03	ci left: 6.459188e-01	ci right 6.473318e-01	k: 1138061	n:1760000
KS ci ratio: 1.544413e-01	ci left: 3.376490e-04	ci right 3.946979e-04	k: 643	n:1760000
RSPH10B   1760000 perm   1574 sec   (1118 perm/sec)   p_kst 3.653409e-04   p_cons 6.466256e-01   p_joint 4.352273e-04

Joint ci ratio: 1.415123e-01	ci left: 4.026658e-04	ci right 4.645246e-04	k: 766	n:1770000
Cons ci ratio: 2.178320e-03	ci left: 6.458879e-01	ci right 6.472969e-01	k: 1144469	n:1770000
KS ci ratio: 1.543217e-01	ci left: 3.362845e-04	ci right 3.930548e-04	k: 644	n:1770000
RSPH10B   1770000 perm   1590 sec   (1113 perm/sec)   p_kst 3.638418e-04   p_cons 6.465927e-01   p_joint 4.327684e-04

Joint ci ratio: 1.407799e-01	ci left: 4.047393e-04	ci right 4.665679e-04	k: 774	n:1780000
Cons ci ratio: 2.172144e-03	ci left: 6.459000e-01	ci right 6.473051e-01	k: 1150953	n:1780000
KS ci ratio: 1.532559e-01	ci left: 3.392569e-04	ci right 3.960972e-04	k: 653	n:1780000
RSPH10B   1780000 perm   1606 sec   (1109 perm/sec)   p_kst 3.668539e-04   p_cons 6.466028e-01   p_joint 4.348315e-04

Joint ci ratio: 1.405082e-01	ci left: 4.040952e-04	ci right 4.656963e-04	k: 777	n:1790000
Cons ci ratio: 2.166018e-03	ci left: 6.459126e-01	ci right 6.473137e-01	k: 1157438	n:1790000
KS ci ratio: 1.529057e-01	ci left: 3.389734e-04	ci right 3.956245e-04	k: 656	n:1790000
RSPH10B   1790000 perm   1621 sec   (1104 perm/sec)   p_kst 3.664804e-04   p_cons 6.466134e-01   p_joint 4.340782e-04

Joint ci ratio: 1.401484e-01	ci left: 4.039944e-04	ci right 4.654093e-04	k: 781	n:1800000
Cons ci ratio: 2.159985e-03	ci left: 6.459162e-01	ci right 6.473134e-01	k: 1163907	n:1800000
KS ci ratio: 1.523271e-01	ci left: 3.397619e-04	ci right 3.963103e-04	k: 661	n:1800000
RSPH10B   1800000 perm   1637 sec   (1099 perm/sec)   p_kst 3.672222e-04   p_cons 6.466150e-01   p_joint 4.338889e-04

Joint ci ratio: 1.397025e-01	ci left: 4.044282e-04	ci right 4.656970e-04	k: 786	n:1810000
Cons ci ratio: 2.154245e-03	ci left: 6.458683e-01	ci right 6.472617e-01	k: 1170283	n:1810000
KS ci ratio: 1.516413e-01	ci left: 3.410736e-04	ci right 3.975616e-04	k: 667	n:1810000
RSPH10B   1810000 perm   1653 sec   (1095 perm/sec)   p_kst 3.685083e-04   p_cons 6.465652e-01   p_joint 4.342541e-04

Joint ci ratio: 1.394370e-01	ci left: 4.037968e-04	ci right 4.648441e-04	k: 789	n:1820000
Cons ci ratio: 2.148442e-03	ci left: 6.458440e-01	ci right 6.472336e-01	k: 1176701	n:1820000
KS ci ratio: 1.511893e-01	ci left: 3.413142e-04	ci right 3.976582e-04	k: 671	n:1820000
RSPH10B   1820000 perm   1669 sec   (1090 perm/sec)   p_kst 3.686813e-04   p_cons 6.465390e-01   p_joint 4.335165e-04

Joint ci ratio: 1.390854e-01	ci left: 4.036999e-04	ci right 4.645659e-04	k: 793	n:1830000
Cons ci ratio: 2.142751e-03	ci left: 6.458058e-01	ci right 6.471916e-01	k: 1183093	n:1830000
KS ci ratio: 1.507413e-01	ci left: 3.415523e-04	ci right 3.977535e-04	k: 675	n:1830000
RSPH10B   1830000 perm   1685 sec   (1086 perm/sec)   p_kst 3.688525e-04   p_cons 6.464989e-01   p_joint 4.333333e-04

Joint ci ratio: 1.386495e-01	ci left: 4.041289e-04	ci right 4.648528e-04	k: 798	n:1840000
Cons ci ratio: 2.136949e-03	ci left: 6.458017e-01	ci right 6.471837e-01	k: 1189547	n:1840000
KS ci ratio: 1.501869e-01	ci left: 3.423111e-04	ci right 3.984114e-04	k: 680	n:1840000
RSPH10B   1840000 perm   1701 sec   (1081 perm/sec)   p_kst 3.695652e-04   p_cons 6.464929e-01   p_joint 4.336957e-04

Joint ci ratio: 1.353027e-01	ci left: 4.228255e-04	ci right 4.847017e-04	k: 838	n:1850000
Cons ci ratio: 2.131279e-03	ci left: 6.457793e-01	ci right 6.471576e-01	k: 1195967	n:1850000
KS ci ratio: 1.498572e-01	ci left: 3.420215e-04	ci right 3.979403e-04	k: 683	n:1850000
RSPH10B   1850000 perm   1718 sec   (1077 perm/sec)   p_kst 3.691892e-04   p_cons 6.464686e-01   p_joint 4.529730e-04

Joint ci ratio: 1.381319e-01	ci left: 4.028975e-04	ci right 4.631918e-04	k: 804	n:1860000
Cons ci ratio: 2.125423e-03	ci left: 6.458066e-01	ci right 6.471812e-01	k: 1202479	n:1860000
KS ci ratio: 1.495297e-01	ci left: 3.417352e-04	ci right 3.974741e-04	k: 686	n:1860000
RSPH10B   1860000 perm   1734 sec   (1073 perm/sec)   p_kst 3.688172e-04   p_cons 6.464941e-01   p_joint 4.322581e-04

Joint ci ratio: 1.378753e-01	ci left: 4.022919e-04	ci right 4.623745e-04	k: 807	n:1870000
Cons ci ratio: 2.119787e-03	ci left: 6.457967e-01	ci right 6.471676e-01	k: 1208922	n:1870000
KS ci ratio: 1.493126e-01	ci left: 3.409373e-04	ci right 3.964581e-04	k: 688	n:1870000
RSPH10B   1870000 perm   1751 sec   (1068 perm/sec)   p_kst 3.679144e-04   p_cons 6.464824e-01   p_joint 4.315508e-04

Joint ci ratio: 1.374506e-01	ci left: 4.027200e-04	ci right 4.626662e-04	k: 812	n:1880000
Cons ci ratio: 2.113999e-03	ci left: 6.458295e-01	ci right 6.471967e-01	k: 1215445	n:1880000
KS ci ratio: 1.488810e-01	ci left: 3.411720e-04	ci right 3.965563e-04	k: 692	n:1880000
RSPH10B   1880000 perm   1768 sec   (1064 perm/sec)   p_kst 3.680851e-04   p_cons 6.465133e-01   p_joint 4.319149e-04

Joint ci ratio: 1.341093e-01	ci left: 4.215458e-04	ci right 4.826473e-04	k: 853	n:1890000
Cons ci ratio: 2.108453e-03	ci left: 6.458196e-01	ci right 6.471832e-01	k: 1221888	n:1890000
KS ci ratio: 1.485598e-01	ci left: 3.408951e-04	ci right 3.961044e-04	k: 695	n:1890000
RSPH10B   1890000 perm   1784 sec   (1059 perm/sec)   p_kst 3.677249e-04   p_cons 6.465016e-01   p_joint 4.513228e-04

Joint ci ratio: 1.337963e-01	ci left: 4.213619e-04	ci right 4.822829e-04	k: 857	n:1900000
Cons ci ratio: 2.103016e-03	ci left: 6.457955e-01	ci right 6.471556e-01	k: 1228304	n:1900000
KS ci ratio: 1.478182e-01	ci left: 3.426486e-04	ci right 3.978403e-04	k: 702	n:1900000
RSPH10B   1900000 perm   1801 sec   (1055 perm/sec)   p_kst 3.694737e-04   p_cons 6.464758e-01   p_joint 4.510526e-04

Joint ci ratio: 1.334082e-01	ci left: 4.216861e-04	ci right 4.824631e-04	k: 862	n:1910000
Cons ci ratio: 2.097524e-03	ci left: 6.457927e-01	ci right 6.471492e-01	k: 1234760	n:1910000
KS ci ratio: 1.473994e-01	ci left: 3.428715e-04	ci right 3.979289e-04	k: 706	n:1910000
RSPH10B   1910000 perm   1818 sec   (1051 perm/sec)   p_kst 3.696335e-04   p_cons 6.464712e-01   p_joint 4.513089e-04

Joint ci ratio: 1.331001e-01	ci left: 4.215037e-04	ci right 4.821030e-04	k: 866	n:1920000
Cons ci ratio: 2.092116e-03	ci left: 6.457811e-01	ci right 6.471341e-01	k: 1241199	n:1920000
KS ci ratio: 1.470877e-01	ci left: 3.425907e-04	ci right 3.974764e-04	k: 709	n:1920000
RSPH10B   1920000 perm   1834 sec   (1047 perm/sec)   p_kst 3.692708e-04   p_cons 6.464578e-01   p_joint 4.510417e-04

Joint ci ratio: 1.321882e-01	ci left: 4.253311e-04	ci right 4.860288e-04	k: 878	n:1930000
Cons ci ratio: 2.086584e-03	ci left: 6.458059e-01	ci right 6.471553e-01	k: 1247708	n:1930000
KS ci ratio: 1.461641e-01	ci left: 3.453077e-04	ci right 4.002511e-04	k: 718	n:1930000
RSPH10B   1930000 perm   1851 sec   (1043 perm/sec)   p_kst 3.720207e-04   p_cons 6.464808e-01   p_joint 4.549223e-04

Joint ci ratio: 1.321132e-01	ci left: 4.236371e-04	ci right 4.840560e-04	k: 879	n:1940000
Cons ci ratio: 2.081157e-03	ci left: 6.458170e-01	ci right 6.471630e-01	k: 1254191	n:1940000
KS ci ratio: 1.459613e-01	ci left: 3.445210e-04	ci right 3.992565e-04	k: 720	n:1940000
RSPH10B   1940000 perm   1868 sec   (1038 perm/sec)   p_kst 3.711340e-04   p_cons 6.464902e-01   p_joint 4.530928e-04

Joint ci ratio: 1.318886e-01	ci left: 4.229522e-04	ci right 4.831629e-04	k: 882	n:1950000
Cons ci ratio: 2.075697e-03	ci left: 6.458445e-01	ci right 6.471869e-01	k: 1260706	n:1950000
KS ci ratio: 1.456586e-01	ci left: 3.442366e-04	ci right 3.988036e-04	k: 723	n:1950000
RSPH10B   1950000 perm   1885 sec   (1034 perm/sec)   p_kst 3.707692e-04   p_cons 6.465159e-01   p_joint 4.523077e-04

Joint ci ratio: 1.315168e-01	ci left: 4.232613e-04	ci right 4.833328e-04	k: 887	n:1960000
Cons ci ratio: 2.070259e-03	ci left: 6.458762e-01	ci right 6.472152e-01	k: 1267230	n:1960000
KS ci ratio: 1.454579e-01	ci left: 3.434635e-04	ci right 3.978264e-04	k: 725	n:1960000
RSPH10B   1960000 perm   1902 sec   (1030 perm/sec)   p_kst 3.698980e-04   p_cons 6.465459e-01   p_joint 4.525510e-04

Joint ci ratio: 1.311480e-01	ci left: 4.235674e-04	ci right 4.835008e-04	k: 892	n:1970000
Cons ci ratio: 2.064962e-03	ci left: 6.458858e-01	ci right 6.472214e-01	k: 1273711	n:1970000
KS ci ratio: 1.448604e-01	ci left: 3.446551e-04	ci right 3.989632e-04	k: 731	n:1970000
RSPH10B   1970000 perm   1919 sec   (1026 perm/sec)   p_kst 3.710660e-04   p_cons 6.465538e-01   p_joint 4.527919e-04

Joint ci ratio: 1.308553e-01	ci left: 4.233822e-04	ci right 4.831452e-04	k: 896	n:1980000
Cons ci ratio: 2.059801e-03	ci left: 6.458741e-01	ci right 6.472063e-01	k: 1280150	n:1980000
KS ci ratio: 1.445645e-01	ci left: 3.443748e-04	ci right 3.985182e-04	k: 734	n:1980000
RSPH10B   1980000 perm   1936 sec   (1023 perm/sec)   p_kst 3.707071e-04   p_cons 6.465404e-01   p_joint 4.525253e-04

Joint ci ratio: 1.305645e-01	ci left: 4.231990e-04	ci right 4.827931e-04	k: 900	n:1990000
Cons ci ratio: 2.054668e-03	ci left: 6.458650e-01	ci right 6.471939e-01	k: 1286594	n:1990000
KS ci ratio: 1.441727e-01	ci left: 3.445817e-04	ci right 3.985982e-04	k: 738	n:1990000
RSPH10B   1990000 perm   1953 sec   (1019 perm/sec)   p_kst 3.708543e-04   p_cons 6.465296e-01   p_joint 4.522613e-04

Joint ci ratio: 1.303478e-01	ci left: 4.225340e-04	ci right 4.819281e-04	k: 903	n:2000000
Cons ci ratio: 2.049534e-03	ci left: 6.458645e-01	ci right 6.471901e-01	k: 1293055	n:2000000
KS ci ratio: 1.436874e-01	ci left: 3.452688e-04	ci right 3.991952e-04	k: 743	n:2000000
RSPH10B   2000000 perm   1971 sec   (1015 perm/sec)   p_kst 3.715000e-04   p_cons 6.465275e-01   p_joint 4.515000e-04

Joint ci ratio: 1.299888e-01	ci left: 4.228384e-04	ci right 4.820989e-04	k: 908	n:2010000
Cons ci ratio: 2.044450e-03	ci left: 6.458615e-01	ci right 6.471838e-01	k: 1299511	n:2010000
KS ci ratio: 1.432070e-01	ci left: 3.459493e-04	ci right 3.997859e-04	k: 748	n:2010000
RSPH10B   2010000 perm   1989 sec   (1011 perm/sec)   p_kst 3.721393e-04   p_cons 6.465229e-01   p_joint 4.517413e-04

Joint ci ratio: 1.294910e-01	ci left: 4.240980e-04	ci right 4.832900e-04	k: 915	n:2020000
Cons ci ratio: 2.039218e-03	ci left: 6.459002e-01	ci right 6.472192e-01	k: 1306051	n:2020000
KS ci ratio: 1.428261e-01	ci left: 3.461460e-04	ci right 3.998578e-04	k: 752	n:2020000
RSPH10B   2020000 perm   2006 sec   (1007 perm/sec)   p_kst 3.722772e-04   p_cons 6.465599e-01   p_joint 4.529703e-04

Joint ci ratio: 1.291391e-01	ci left: 4.243923e-04	ci right 4.834520e-04	k: 920	n:2030000
Cons ci ratio: 2.034164e-03	ci left: 6.459075e-01	ci right 6.472232e-01	k: 1312528	n:2030000
KS ci ratio: 1.423542e-01	ci left: 3.468161e-04	ci right 4.004389e-04	k: 757	n:2030000
RSPH10B   2030000 perm   2024 sec   (1003 perm/sec)   p_kst 3.729064e-04   p_cons 6.465655e-01   p_joint 4.532020e-04

Joint ci ratio: 1.200875e-01	ci left: 4.907037e-04	ci right 5.538655e-04	k: 1064	n:2040000
Cons ci ratio: 2.029161e-03	ci left: 6.459117e-01	ci right 6.472242e-01	k: 1318999	n:2040000
KS ci ratio: 1.418870e-01	ci left: 3.474798e-04	ci right 4.010140e-04	k: 762	n:2040000
RSPH10B   2040000 perm   2041 sec   (999 perm/sec)   p_kst 3.735294e-04   p_cons 6.465681e-01   p_joint 5.215686e-04

Joint ci ratio: 1.198626e-01	ci left: 4.902026e-04	ci right 5.531735e-04	k: 1068	n:2050000
Cons ci ratio: 2.024233e-03	ci left: 6.459071e-01	ci right 6.472164e-01	k: 1325452	n:2050000
KS ci ratio: 1.417014e-01	ci left: 3.467258e-04	ci right 4.000681e-04	k: 764	n:2050000
RSPH10B   2050000 perm   2059 sec   (996 perm/sec)   p_kst 3.726829e-04   p_cons 6.465620e-01   p_joint 5.209756e-04

Joint ci ratio: 1.197508e-01	ci left: 4.887648e-04	ci right 5.514882e-04	k: 1070	n:2060000
Cons ci ratio: 2.019133e-03	ci left: 6.459497e-01	ci right 6.472557e-01	k: 1332002	n:2060000
KS ci ratio: 1.415166e-01	ci left: 3.459791e-04	ci right 3.991313e-04	k: 766	n:2060000
RSPH10B   2060000 perm   2077 sec   (992 perm/sec)   p_kst 3.718447e-04   p_cons 6.466029e-01   p_joint 5.194175e-04

Joint ci ratio: 1.195278e-01	ci left: 4.882781e-04	ci right 5.508142e-04	k: 1074	n:2070000
Cons ci ratio: 2.014199e-03	ci left: 6.459629e-01	ci right 6.472657e-01	k: 1338492	n:2070000
KS ci ratio: 1.414245e-01	ci left: 3.447737e-04	ci right 3.977033e-04	k: 767	n:2070000
RSPH10B   2070000 perm   2095 sec   (988 perm/sec)   p_kst 3.705314e-04   p_cons 6.466145e-01   p_joint 5.188406e-04

Joint ci ratio: 1.236842e-01	ci left: 4.528335e-04	ci right 5.129945e-04	k: 1003	n:2080000
Cons ci ratio: 2.009223e-03	ci left: 6.459937e-01	ci right 6.472934e-01	k: 1345019	n:2080000
KS ci ratio: 1.411492e-01	ci left: 3.445075e-04	ci right 3.972845e-04	k: 770	n:2080000
RSPH10B   2080000 perm   2113 sec   (984 perm/sec)   p_kst 3.701923e-04   p_cons 6.466437e-01   p_joint 4.822115e-04

Joint ci ratio: 1.236844e-01	ci left: 4.506668e-04	ci right 5.105400e-04	k: 1003	n:2090000
Cons ci ratio: 2.004235e-03	ci left: 6.460352e-01	ci right 6.473318e-01	k: 1351569	n:2090000
KS ci ratio: 1.411493e-01	ci left: 3.428591e-04	ci right 3.953836e-04	k: 770	n:2090000
RSPH10B   2090000 perm   2131 sec   (981 perm/sec)   p_kst 3.684211e-04   p_cons 6.466837e-01   p_joint 4.799043e-04

Joint ci ratio: 1.235000e-01	ci left: 4.499052e-04	ci right 5.095816e-04	k: 1006	n:2100000
Cons ci ratio: 1.999263e-03	ci left: 6.460812e-01	ci right 6.473746e-01	k: 1358129	n:2100000
KS ci ratio: 1.408755e-01	ci left: 3.426046e-04	ci right 3.949798e-04	k: 773	n:2100000
RSPH10B   2100000 perm   2149 sec   (977 perm/sec)   p_kst 3.680952e-04   p_cons 6.467281e-01   p_joint 4.790476e-04

Joint ci ratio: 1.273543e-01	ci left: 4.202285e-04	ci right 4.778395e-04	k: 946	n:2110000
Cons ci ratio: 1.994367e-03	ci left: 6.461177e-01	ci right 6.474080e-01	k: 1364670	n:2110000
KS ci ratio: 1.403325e-01	ci left: 3.437244e-04	ci right 3.960514e-04	k: 779	n:2110000
RSPH10B   2110000 perm   2168 sec   (973 perm/sec)   p_kst 3.691943e-04   p_cons 6.467630e-01   p_joint 4.483412e-04

Joint ci ratio: 1.270194e-01	ci left: 4.205297e-04	ci right 4.780190e-04	k: 951	n:2120000
Cons ci ratio: 1.989493e-03	ci left: 6.461571e-01	ci right 6.474444e-01	k: 1371218	n:2120000
KS ci ratio: 1.402428e-01	ci left: 3.425582e-04	ci right 3.946715e-04	k: 780	n:2120000
RSPH10B   2120000 perm   2187 sec   (970 perm/sec)   p_kst 3.679245e-04   p_cons 6.468009e-01   p_joint 4.485849e-04

Joint ci ratio: 1.266871e-01	ci left: 4.208283e-04	ci right 4.781966e-04	k: 956	n:2130000
Cons ci ratio: 1.984707e-03	ci left: 6.461840e-01	ci right 6.474682e-01	k: 1377740	n:2130000
KS ci ratio: 1.396184e-01	ci left: 3.441213e-04	ci right 3.962199e-04	k: 787	n:2130000
RSPH10B   2130000 perm   2205 sec   (966 perm/sec)   p_kst 3.694836e-04   p_cons 6.468263e-01   p_joint 4.488263e-04

Joint ci ratio: 1.264232e-01	ci left: 4.206718e-04	ci right 4.778904e-04	k: 960	n:2140000
Cons ci ratio: 1.979883e-03	ci left: 6.462274e-01	ci right 6.475086e-01	k: 1384298	n:2140000
KS ci ratio: 1.394416e-01	ci left: 3.434152e-04	ci right 3.953356e-04	k: 789	n:2140000
RSPH10B   2140000 perm   2224 sec   (962 perm/sec)   p_kst 3.686916e-04   p_cons 6.468682e-01   p_joint 4.485981e-04

Joint ci ratio: 1.261609e-01	ci left: 4.205169e-04	ci right 4.775869e-04	k: 964	n:2150000
Cons ci ratio: 1.975208e-03	ci left: 6.462440e-01	ci right 6.475221e-01	k: 1390799	n:2150000
KS ci ratio: 1.391776e-01	ci left: 3.431647e-04	ci right 3.949408e-04	k: 792	n:2150000
RSPH10B   2150000 perm   2242 sec   (959 perm/sec)   p_kst 3.683721e-04   p_cons 6.468833e-01   p_joint 4.483721e-04

Joint ci ratio: 1.257057e-01	ci left: 4.217087e-04	ci right 4.787186e-04	k: 971	n:2160000
Cons ci ratio: 1.970690e-03	ci left: 6.462316e-01	ci right 6.475069e-01	k: 1397238	n:2160000
KS ci ratio: 1.387408e-01	ci left: 3.438103e-04	ci right 3.955076e-04	k: 797	n:2160000
RSPH10B   2160000 perm   2261 sec   (955 perm/sec)   p_kst 3.689815e-04   p_cons 6.468694e-01   p_joint 4.495370e-04

Joint ci ratio: 1.281015e-01	ci left: 4.037019e-04	ci right 4.593966e-04	k: 935	n:2170000
Cons ci ratio: 1.966203e-03	ci left: 6.462194e-01	ci right 6.474917e-01	k: 1403677	n:2170000
KS ci ratio: 1.383082e-01	ci left: 3.444502e-04	ci right 3.960689e-04	k: 802	n:2170000
RSPH10B   2170000 perm   2279 sec   (952 perm/sec)   p_kst 3.695853e-04   p_cons 6.468558e-01   p_joint 4.308756e-04

Joint ci ratio: 1.276251e-01	ci left: 4.049584e-04	ci right 4.606029e-04	k: 942	n:2180000
Cons ci ratio: 1.961699e-03	ci left: 6.462183e-01	ci right 6.474877e-01	k: 1410140	n:2180000
KS ci ratio: 1.377943e-01	ci left: 3.455274e-04	ci right 3.970994e-04	k: 808	n:2180000
RSPH10B   2180000 perm   2298 sec   (949 perm/sec)   p_kst 3.706422e-04   p_cons 6.468532e-01   p_joint 4.321101e-04

Joint ci ratio: 1.274226e-01	ci left: 4.044354e-04	ci right 4.599132e-04	k: 945	n:2190000
Cons ci ratio: 1.957365e-03	ci left: 6.461848e-01	ci right 6.474513e-01	k: 1416532	n:2190000
KS ci ratio: 1.374548e-01	ci left: 3.457133e-04	ci right 3.971755e-04	k: 812	n:2190000
RSPH10B   2190000 perm   2317 sec   (945 perm/sec)   p_kst 3.707763e-04   p_cons 6.468183e-01   p_joint 4.315068e-04

Joint ci ratio: 1.272882e-01	ci left: 4.034772e-04	ci right 4.587608e-04	k: 947	n:2200000
Cons ci ratio: 1.952828e-03	ci left: 6.462057e-01	ci right 6.474693e-01	k: 1423043	n:2200000
KS ci ratio: 1.372020e-01	ci left: 3.454586e-04	ci right 3.967806e-04	k: 815	n:2200000
RSPH10B   2200000 perm   2336 sec   (942 perm/sec)   p_kst 3.704545e-04   p_cons 6.468377e-01   p_joint 4.304545e-04

Joint ci ratio: 1.270873e-01	ci left: 4.029657e-04	ci right 4.580856e-04	k: 950	n:2210000
Cons ci ratio: 1.948473e-03	ci left: 6.461912e-01	ci right 6.474519e-01	k: 1429476	n:2210000
KS ci ratio: 1.369505e-01	ci left: 3.452064e-04	ci right 3.963892e-04	k: 818	n:2210000
RSPH10B   2210000 perm   2355 sec   (939 perm/sec)   p_kst 3.701357e-04   p_cons 6.468217e-01   p_joint 4.298643e-04

Joint ci ratio: 1.268874e-01	ci left: 4.024590e-04	ci right 4.574164e-04	k: 953	n:2220000
Cons ci ratio: 1.944226e-03	ci left: 6.461582e-01	ci right 6.474162e-01	k: 1435868	n:2220000
KS ci ratio: 1.366172e-01	ci left: 3.453915e-04	ci right 3.964671e-04	k: 822	n:2220000
RSPH10B   2220000 perm   2374 sec   (935 perm/sec)   p_kst 3.702703e-04   p_cons 6.467874e-01   p_joint 4.292793e-04

Joint ci ratio: 1.266222e-01	ci left: 4.023911e-04	ci right 4.572158e-04	k: 957	n:2230000
Cons ci ratio: 1.939843e-03	ci left: 6.461642e-01	ci right 6.474193e-01	k: 1442346	n:2230000
KS ci ratio: 1.362041e-01	ci left: 3.460083e-04	ci right 3.970078e-04	k: 827	n:2230000
RSPH10B   2230000 perm   2393 sec   (932 perm/sec)   p_kst 3.708520e-04   p_cons 6.467919e-01   p_joint 4.291480e-04

Joint ci ratio: 1.260967e-01	ci left: 4.040533e-04	ci right 4.588589e-04	k: 965	n:2240000
Cons ci ratio: 1.935615e-03	ci left: 6.461402e-01	ci right 6.473925e-01	k: 1448757	n:2240000
KS ci ratio: 1.357947e-01	ci left: 3.466199e-04	ci right 3.975435e-04	k: 832	n:2240000
RSPH10B   2240000 perm   2412 sec   (929 perm/sec)   p_kst 3.714286e-04   p_cons 6.467665e-01   p_joint 4.308036e-04

Joint ci ratio: 1.259014e-01	ci left: 4.035488e-04	ci right 4.581948e-04	k: 968	n:2250000
Cons ci ratio: 1.931250e-03	ci left: 6.461555e-01	ci right 6.474050e-01	k: 1455256	n:2250000
KS ci ratio: 1.353889e-01	ci left: 3.472262e-04	ci right 3.980742e-04	k: 837	n:2250000
RSPH10B   2250000 perm   2431 sec   (925 perm/sec)   p_kst 3.720000e-04   p_cons 6.467804e-01   p_joint 4.302222e-04

Joint ci ratio: 1.258366e-01	ci left: 4.021917e-04	ci right 4.566239e-04	k: 969	n:2260000
Cons ci ratio: 1.926900e-03	ci left: 6.461742e-01	ci right 6.474210e-01	k: 1461763	n:2260000
KS ci ratio: 1.350669e-01	ci left: 3.473998e-04	ci right 3.981426e-04	k: 841	n:2260000
RSPH10B   2260000 perm   2451 sec   (922 perm/sec)   p_kst 3.721239e-04   p_cons 6.467978e-01   p_joint 4.287611e-04

Joint ci ratio: 1.257719e-01	ci left: 4.008466e-04	ci right 4.550667e-04	k: 970	n:2270000
Cons ci ratio: 1.922732e-03	ci left: 6.461562e-01	ci right 6.474002e-01	k: 1468187	n:2270000
KS ci ratio: 1.348270e-01	ci left: 3.471464e-04	ci right 3.977548e-04	k: 844	n:2270000
RSPH10B   2270000 perm   2470 sec   (919 perm/sec)   p_kst 3.718062e-04   p_cons 6.467784e-01   p_joint 4.273128e-04

Joint ci ratio: 1.255780e-01	ci left: 4.003629e-04	ci right 4.544279e-04	k: 973	n:2280000
Cons ci ratio: 1.918537e-03	ci left: 6.461515e-01	ci right 6.473928e-01	k: 1474641	n:2280000
KS ci ratio: 1.345090e-01	ci left: 3.473191e-04	ci right 3.978237e-04	k: 848	n:2280000
RSPH10B   2280000 perm   2490 sec   (916 perm/sec)   p_kst 3.719298e-04   p_cons 6.467724e-01   p_joint 4.267544e-04

Joint ci ratio: 1.254494e-01	ci left: 3.994605e-04	ci right 4.533443e-04	k: 975	n:2290000
Cons ci ratio: 1.914463e-03	ci left: 6.461242e-01	ci right 6.473628e-01	k: 1481043	n:2290000
KS ci ratio: 1.344299e-01	ci left: 3.462244e-04	ci right 3.965379e-04	k: 849	n:2290000
RSPH10B   2290000 perm   2510 sec   (912 perm/sec)   p_kst 3.707424e-04   p_cons 6.467437e-01   p_joint 4.257642e-04

Joint ci ratio: 1.252570e-01	ci left: 3.989872e-04	ci right 4.527185e-04	k: 978	n:2300000
Cons ci ratio: 1.910305e-03	ci left: 6.461236e-01	ci right 6.473595e-01	k: 1487506	n:2300000
KS ci ratio: 1.342721e-01	ci left: 3.455594e-04	ci right 3.957126e-04	k: 851	n:2300000
RSPH10B   2300000 perm   2530 sec   (909 perm/sec)   p_kst 3.700000e-04   p_cons 6.467417e-01   p_joint 4.252174e-04

Joint ci ratio: 1.248116e-01	ci left: 4.001955e-04	ci right 4.538837e-04	k: 985	n:2310000
Cons ci ratio: 1.906105e-03	ci left: 6.461395e-01	ci right 6.473727e-01	k: 1494007	n:2310000
KS ci ratio: 1.339580e-01	ci left: 3.457370e-04	ci right 3.957892e-04	k: 855	n:2310000
RSPH10B   2310000 perm   2550 sec   (906 perm/sec)   p_kst 3.701299e-04   p_cons 6.467563e-01   p_joint 4.264069e-04

Joint ci ratio: 1.246852e-01	ci left: 3.993057e-04	ci right 4.528163e-04	k: 987	n:2320000
Cons ci ratio: 1.902062e-03	ci left: 6.461242e-01	ci right 6.473547e-01	k: 1500436	n:2320000
KS ci ratio: 1.338018e-01	ci left: 3.450799e-04	ci right 3.949742e-04	k: 857	n:2320000
RSPH10B   2320000 perm   2570 sec   (903 perm/sec)   p_kst 3.693966e-04   p_cons 6.467397e-01   p_joint 4.254310e-04

Joint ci ratio: 1.244964e-01	ci left: 3.988393e-04	ci right 4.522005e-04	k: 990	n:2330000
Cons ci ratio: 1.897875e-03	ci left: 6.461498e-01	ci right 6.473777e-01	k: 1506960	n:2330000
KS ci ratio: 1.336462e-01	ci left: 3.444285e-04	ci right 3.941661e-04	k: 859	n:2330000
RSPH10B   2330000 perm   2590 sec   (900 perm/sec)   p_kst 3.686695e-04   p_cons 6.467639e-01   p_joint 4.248927e-04

Joint ci ratio: 1.216441e-01	ci left: 4.166023e-04	ci right 4.709712e-04	k: 1037	n:2340000
Cons ci ratio: 1.893907e-03	ci left: 6.461291e-01	ci right 6.473543e-01	k: 1513376	n:2340000
KS ci ratio: 1.334911e-01	ci left: 3.437828e-04	ci right 3.933648e-04	k: 861	n:2340000
RSPH10B   2340000 perm   2609 sec   (897 perm/sec)   p_kst 3.679487e-04   p_cons 6.467419e-01   p_joint 4.431624e-04

Joint ci ratio: 1.212940e-01	ci left: 4.173052e-04	ci right 4.715978e-04	k: 1043	n:2350000
Cons ci ratio: 1.890159e-03	ci left: 6.460612e-01	ci right 6.472839e-01	k: 1519681	n:2350000
KS ci ratio: 1.331056e-01	ci left: 3.443766e-04	ci right 3.938895e-04	k: 866	n:2350000
RSPH10B   2350000 perm   2630 sec   (894 perm/sec)   p_kst 3.685106e-04   p_cons 6.466728e-01   p_joint 4.438298e-04

Joint ci ratio: 1.208318e-01	ci left: 4.188241e-04	ci right 4.730919e-04	k: 1051	n:2360000
Cons ci ratio: 1.886169e-03	ci left: 6.460580e-01	ci right 6.472781e-01	k: 1526137	n:2360000
KS ci ratio: 1.327234e-01	ci left: 3.449655e-04	ci right 3.944095e-04	k: 871	n:2360000
RSPH10B   2360000 perm   2650 sec   (891 perm/sec)   p_kst 3.690678e-04   p_cons 6.466682e-01   p_joint 4.453390e-04

Joint ci ratio: 1.206599e-01	ci left: 4.182845e-04	ci right 4.723998e-04	k: 1054	n:2370000
Cons ci ratio: 1.882258e-03	ci left: 6.460417e-01	ci right 6.472592e-01	k: 1532562	n:2370000
KS ci ratio: 1.324957e-01	ci left: 3.447338e-04	ci right 3.940532e-04	k: 874	n:2370000
RSPH10B   2370000 perm   2670 sec   (888 perm/sec)   p_kst 3.687764e-04   p_cons 6.466506e-01   p_joint 4.447257e-04

Joint ci ratio: 1.203750e-01	ci left: 4.185645e-04	ci right 4.725790e-04	k: 1059	n:2380000
Cons ci ratio: 1.878253e-03	ci left: 6.460541e-01	ci right 6.472691e-01	k: 1539055	n:2380000
KS ci ratio: 1.321939e-01	ci left: 3.449104e-04	ci right 3.941337e-04	k: 878	n:2380000
RSPH10B   2380000 perm   2690 sec   (885 perm/sec)   p_kst 3.689076e-04   p_cons 6.466618e-01   p_joint 4.449580e-04

Joint ci ratio: 1.201485e-01	ci left: 4.184365e-04	ci right 4.723257e-04	k: 1063	n:2390000
Cons ci ratio: 1.874317e-03	ci left: 6.460559e-01	ci right 6.472684e-01	k: 1545523	n:2390000
KS ci ratio: 1.318941e-01	ci left: 3.450856e-04	ci right 3.942135e-04	k: 882	n:2390000
RSPH10B   2390000 perm   2710 sec   (882 perm/sec)   p_kst 3.690377e-04   p_cons 6.466623e-01   p_joint 4.447699e-04

Joint ci ratio: 1.115169e-01	ci left: 4.858825e-04	ci right 5.436671e-04	k: 1234	n:2400000
Cons ci ratio: 1.870377e-03	ci left: 6.460649e-01	ci right 6.472748e-01	k: 1552008	n:2400000
KS ci ratio: 1.315964e-01	ci left: 3.452595e-04	ci right 3.942926e-04	k: 886	n:2400000
RSPH10B   2400000 perm   2731 sec   (879 perm/sec)   p_kst 3.691667e-04   p_cons 6.466700e-01   p_joint 5.141667e-04

Joint ci ratio: 1.114268e-01	ci left: 4.846731e-04	ci right 5.422643e-04	k: 1236	n:2410000
Cons ci ratio: 1.866396e-03	ci left: 6.460899e-01	ci right 6.472973e-01	k: 1558532	n:2410000
KS ci ratio: 1.313744e-01	ci left: 3.450307e-04	ci right 3.939422e-04	k: 889	n:2410000
RSPH10B   2410000 perm   2751 sec   (876 perm/sec)   p_kst 3.688797e-04   p_cons 6.466938e-01   p_joint 5.128631e-04

Joint ci ratio: 1.110236e-01	ci left: 4.862859e-04	ci right 5.438459e-04	k: 1245	n:2420000
Cons ci ratio: 1.862547e-03	ci left: 6.460883e-01	ci right 6.472932e-01	k: 1564992	n:2420000
KS ci ratio: 1.308607e-01	ci left: 3.464027e-04	ci right 3.953017e-04	k: 896	n:2420000
RSPH10B   2420000 perm   2772 sec   (873 perm/sec)   p_kst 3.702479e-04   p_cons 6.466909e-01   p_joint 5.144628e-04

Joint ci ratio: 1.106688e-01	ci left: 4.874856e-04	ci right 5.449913e-04	k: 1253	n:2430000
Cons ci ratio: 1.858548e-03	ci left: 6.461295e-01	ci right 6.473319e-01	k: 1571556	n:2430000
KS ci ratio: 1.304252e-01	ci left: 3.473656e-04	ci right 3.962247e-04	k: 902	n:2430000
RSPH10B   2430000 perm   2792 sec   (870 perm/sec)   p_kst 3.711934e-04   p_cons 6.467309e-01   p_joint 5.156379e-04

Joint ci ratio: 1.104049e-01	ci left: 4.878788e-04	ci right 5.452847e-04	k: 1259	n:2440000
Cons ci ratio: 1.854683e-03	ci left: 6.461437e-01	ci right 6.473436e-01	k: 1578055	n:2440000
KS ci ratio: 1.299939e-01	ci left: 3.483209e-04	ci right 3.971399e-04	k: 908	n:2440000
RSPH10B   2440000 perm   2813 sec   (867 perm/sec)   p_kst 3.721311e-04   p_cons 6.467439e-01   p_joint 5.159836e-04

Joint ci ratio: 1.099693e-01	ci left: 4.898566e-04	ci right 5.472531e-04	k: 1269	n:2450000
Cons ci ratio: 1.851065e-03	ci left: 6.461027e-01	ci right 6.473002e-01	k: 1584419	n:2450000
KS ci ratio: 1.294256e-01	ci left: 3.500586e-04	ci right 3.988901e-04	k: 916	n:2450000
RSPH10B   2450000 perm   2834 sec   (865 perm/sec)   p_kst 3.738776e-04   p_cons 6.467016e-01   p_joint 5.179592e-04

Joint ci ratio: 1.097966e-01	ci left: 4.894466e-04	ci right 5.466991e-04	k: 1273	n:2460000
Cons ci ratio: 1.847383e-03	ci left: 6.460832e-01	ci right 6.472782e-01	k: 1590835	n:2460000
KS ci ratio: 1.292847e-01	ci left: 3.494223e-04	ci right 3.981079e-04	k: 918	n:2460000
RSPH10B   2460000 perm   2855 sec   (862 perm/sec)   p_kst 3.731707e-04   p_cons 6.466809e-01   p_joint 5.174797e-04

Joint ci ratio: 1.096676e-01	ci left: 4.886463e-04	ci right 5.457337e-04	k: 1276	n:2470000
Cons ci ratio: 1.843716e-03	ci left: 6.460654e-01	ci right 6.472581e-01	k: 1597255	n:2470000
KS ci ratio: 1.290742e-01	ci left: 3.491829e-04	ci right 3.977500e-04	k: 921	n:2470000
RSPH10B   2470000 perm   2876 sec   (859 perm/sec)   p_kst 3.728745e-04   p_cons 6.466619e-01   p_joint 5.165992e-04

Joint ci ratio: 1.174210e-01	ci left: 4.228137e-04	ci right 4.759447e-04	k: 1113	n:2480000
Cons ci ratio: 1.840007e-03	ci left: 6.460636e-01	ci right 6.472538e-01	k: 1603714	n:2480000
KS ci ratio: 1.284487e-01	ci left: 3.512871e-04	ci right 3.998920e-04	k: 930	n:2480000
RSPH10B   2480000 perm   2897 sec   (856 perm/sec)   p_kst 3.750000e-04   p_cons 6.466589e-01   p_joint 4.487903e-04

Joint ci ratio: 1.171584e-01	ci left: 4.230648e-04	ci right 4.761002e-04	k: 1118	n:2490000
Cons ci ratio: 1.836257e-03	ci left: 6.460778e-01	ci right 6.472656e-01	k: 1610213	n:2490000
KS ci ratio: 1.281736e-01	ci left: 3.514312e-04	ci right 3.999439e-04	k: 934	n:2490000
RSPH10B   2490000 perm   2918 sec   (853 perm/sec)   p_kst 3.751004e-04   p_cons 6.466719e-01   p_joint 4.489960e-04

Joint ci ratio: 1.170017e-01	ci left: 4.225374e-04	ci right 4.754309e-04	k: 1121	n:2500000
Cons ci ratio: 1.832517e-03	ci left: 6.460947e-01	ci right 6.472802e-01	k: 1616719	n:2500000
KS ci ratio: 1.280368e-01	ci left: 3.507998e-04	ci right 3.991698e-04	k: 936	n:2500000
RSPH10B   2500000 perm   2939 sec   (851 perm/sec)   p_kst 3.744000e-04   p_cons 6.466876e-01   p_joint 4.484000e-04

Joint ci ratio: 1.168456e-01	ci left: 4.220142e-04	ci right 4.747670e-04	k: 1124	n:2510000
Cons ci ratio: 1.828796e-03	ci left: 6.461127e-01	ci right 6.472957e-01	k: 1623228	n:2510000
KS ci ratio: 1.276965e-01	ci left: 3.513305e-04	ci right 3.996352e-04	k: 941	n:2510000
RSPH10B   2510000 perm   2960 sec   (848 perm/sec)   p_kst 3.749004e-04   p_cons 6.467044e-01   p_joint 4.478088e-04

Joint ci ratio: 1.164323e-01	ci left: 4.234216e-04	ci right 4.761501e-04	k: 1132	n:2520000
Cons ci ratio: 1.825200e-03	ci left: 6.461047e-01	ci right 6.472854e-01	k: 1629672	n:2520000
KS ci ratio: 1.272917e-01	ci left: 3.522414e-04	ci right 4.005062e-04	k: 947	n:2520000
RSPH10B   2520000 perm   2982 sec   (845 perm/sec)   p_kst 3.757937e-04   p_cons 6.466952e-01   p_joint 4.492063e-04

Joint ci ratio: 1.187078e-01	ci left: 4.052515e-04	ci right 4.567728e-04	k: 1089	n:2530000
Cons ci ratio: 1.821563e-03	ci left: 6.461126e-01	ci right 6.472910e-01	k: 1636156	n:2530000
KS ci ratio: 1.266916e-01	ci left: 3.542934e-04	ci right 4.025934e-04	k: 956	n:2530000
RSPH10B   2530000 perm   3003 sec   (842 perm/sec)   p_kst 3.778656e-04   p_cons 6.467020e-01   p_joint 4.304348e-04

Joint ci ratio: 1.184906e-01	ci left: 4.051841e-04	ci right 4.565960e-04	k: 1093	n:2540000
Cons ci ratio: 1.818063e-03	ci left: 6.460913e-01	ci right 6.472674e-01	k: 1642566	n:2540000
KS ci ratio: 1.263619e-01	ci left: 3.548048e-04	ci right 4.030391e-04	k: 961	n:2540000
RSPH10B   2540000 perm   3024 sec   (840 perm/sec)   p_kst 3.783465e-04   p_cons 6.466795e-01   p_joint 4.303150e-04

Joint ci ratio: 1.184365e-01	ci left: 4.039756e-04	ci right 4.552092e-04	k: 1094	n:2550000
Cons ci ratio: 1.814429e-03	ci left: 6.461090e-01	ci right 6.472828e-01	k: 1649075	n:2550000
KS ci ratio: 1.262964e-01	ci left: 3.537932e-04	ci right 4.018631e-04	k: 962	n:2550000
RSPH10B   2550000 perm   3046 sec   (837 perm/sec)   p_kst 3.772549e-04   p_cons 6.466961e-01   p_joint 4.290196e-04

Joint ci ratio: 1.181133e-01	ci left: 4.046720e-04	ci right 4.558441e-04	k: 1100	n:2560000
Cons ci ratio: 1.810815e-03	ci left: 6.461270e-01	ci right 6.472984e-01	k: 1655585	n:2560000
KS ci ratio: 1.261001e-01	ci left: 3.535460e-04	ci right 4.015022e-04	k: 965	n:2560000
RSPH10B   2560000 perm   3067 sec   (835 perm/sec)   p_kst 3.769531e-04   p_cons 6.467129e-01   p_joint 4.296875e-04

Joint ci ratio: 1.180063e-01	ci left: 4.038526e-04	ci right 4.548716e-04	k: 1102	n:2570000
Cons ci ratio: 1.807212e-03	ci left: 6.461476e-01	ci right 6.473167e-01	k: 1662102	n:2570000
KS ci ratio: 1.259698e-01	ci left: 3.529240e-04	ci right 4.007427e-04	k: 967	n:2570000
RSPH10B   2570000 perm   3089 sec   (832 perm/sec)   p_kst 3.762646e-04   p_cons 6.467323e-01   p_joint 4.287938e-04

Joint ci ratio: 1.178995e-01	ci left: 4.030396e-04	ci right 4.539066e-04	k: 1104	n:2580000
Cons ci ratio: 1.803856e-03	ci left: 6.461106e-01	ci right 6.472775e-01	k: 1668471	n:2580000
KS ci ratio: 1.257103e-01	ci left: 3.530577e-04	ci right 4.007886e-04	k: 971	n:2580000
RSPH10B   2580000 perm   3110 sec   (829 perm/sec)   p_kst 3.763566e-04   p_cons 6.466942e-01   p_joint 4.279070e-04

Joint ci ratio: 1.174749e-01	ci left: 4.044814e-04	ci right 4.553337e-04	k: 1112	n:2590000
Cons ci ratio: 1.800377e-03	ci left: 6.461102e-01	ci right 6.472748e-01	k: 1674934	n:2590000
KS ci ratio: 1.253882e-01	ci left: 3.535644e-04	ci right 4.012322e-04	k: 976	n:2590000
RSPH10B   2590000 perm   3132 sec   (827 perm/sec)   p_kst 3.768340e-04   p_cons 6.466927e-01   p_joint 4.293436e-04

Joint ci ratio: 1.171595e-01	ci left: 4.051657e-04	ci right 4.559578e-04	k: 1118	n:2600000
Cons ci ratio: 1.796949e-03	ci left: 6.461017e-01	ci right 6.472641e-01	k: 1681376	n:2600000
KS ci ratio: 1.251962e-01	ci left: 3.533222e-04	ci right 4.008790e-04	k: 979	n:2600000
RSPH10B   2600000 perm   3155 sec   (824 perm/sec)   p_kst 3.765385e-04   p_cons 6.466831e-01   p_joint 4.300000e-04

Joint ci ratio: 1.084025e-01	ci left: 4.736160e-04	ci right 5.282684e-04	k: 1306	n:2610000
Cons ci ratio: 1.793474e-03	ci left: 6.461102e-01	ci right 6.472704e-01	k: 1687862	n:2610000
KS ci ratio: 1.248780e-01	ci left: 3.538243e-04	ci right 4.013187e-04	k: 984	n:2610000
RSPH10B   2610000 perm   3177 sec   (822 perm/sec)   p_kst 3.770115e-04   p_cons 6.466904e-01   p_joint 5.003831e-04

Joint ci ratio: 1.165878e-01	ci left: 4.061486e-04	ci right 4.567983e-04	k: 1129	n:2620000
Cons ci ratio: 1.790030e-03	ci left: 6.461159e-01	ci right 6.472739e-01	k: 1694341	n:2620000
KS ci ratio: 1.246883e-01	ci left: 3.535831e-04	ci right 4.009677e-04	k: 987	n:2620000
RSPH10B   2620000 perm   3198 sec   (819 perm/sec)   p_kst 3.767176e-04   p_cons 6.466950e-01   p_joint 4.309160e-04

Joint ci ratio: 1.080312e-01	ci left: 4.733438e-04	ci right 5.277658e-04	k: 1315	n:2630000
Cons ci ratio: 1.786572e-03	ci left: 6.461303e-01	ci right 6.472861e-01	k: 1700843	n:2630000
KS ci ratio: 1.244366e-01	ci left: 3.537122e-04	ci right 4.010114e-04	k: 991	n:2630000
RSPH10B   2630000 perm   3220 sec   (817 perm/sec)   p_kst 3.768061e-04   p_cons 6.467084e-01   p_joint 5.000000e-04

Joint ci ratio: 1.078675e-01	ci left: 4.730251e-04	ci right 5.273228e-04	k: 1319	n:2640000
Cons ci ratio: 1.783008e-03	ci left: 6.461769e-01	ci right 6.473304e-01	k: 1707430	n:2640000
KS ci ratio: 1.241865e-01	ci left: 3.538404e-04	ci right 4.010546e-04	k: 995	n:2640000
RSPH10B   2640000 perm   3242 sec   (814 perm/sec)   p_kst 3.768939e-04   p_cons 6.467538e-01   p_joint 4.996212e-04

Joint ci ratio: 1.076231e-01	ci left: 4.734432e-04	ci right 5.276580e-04	k: 1325	n:2650000
Cons ci ratio: 1.779585e-03	ci left: 6.461921e-01	ci right 6.473434e-01	k: 1713935	n:2650000
KS ci ratio: 1.239379e-01	ci left: 3.539678e-04	ci right 4.010975e-04	k: 999	n:2650000
RSPH10B   2650000 perm   3264 sec   (812 perm/sec)   p_kst 3.769811e-04   p_cons 6.467679e-01   p_joint 5.000000e-04

Joint ci ratio: 1.074612e-01	ci left: 4.731266e-04	ci right 5.272185e-04	k: 1329	n:2660000
Cons ci ratio: 1.776226e-03	ci left: 6.461959e-01	ci right 6.473451e-01	k: 1720410	n:2660000
KS ci ratio: 1.237524e-01	ci left: 3.537300e-04	ci right 4.007523e-04	k: 1002	n:2660000
RSPH10B   2660000 perm   3286 sec   (809 perm/sec)   p_kst 3.766917e-04   p_cons 6.467707e-01   p_joint 4.996241e-04

Joint ci ratio: 1.070593e-01	ci left: 4.749995e-04	ci right 5.290897e-04	k: 1339	n:2670000
Cons ci ratio: 1.772760e-03	ci left: 6.462323e-01	ci right 6.473793e-01	k: 1726972	n:2670000
KS ci ratio: 1.233839e-01	ci left: 3.545829e-04	ci right 4.015680e-04	k: 1008	n:2670000
RSPH10B   2670000 perm   3308 sec   (807 perm/sec)   p_kst 3.775281e-04   p_cons 6.468060e-01   p_joint 5.014981e-04

Joint ci ratio: 1.068999e-01	ci left: 4.746797e-04	ci right 5.286479e-04	k: 1343	n:2680000
Cons ci ratio: 1.769546e-03	ci left: 6.462084e-01	ci right 6.473532e-01	k: 1733373	n:2680000
KS ci ratio: 1.232009e-01	ci left: 3.543447e-04	ci right 4.012235e-04	k: 1011	n:2680000
RSPH10B   2680000 perm   3331 sec   (805 perm/sec)   p_kst 3.772388e-04   p_cons 6.467810e-01   p_joint 5.011194e-04

Joint ci ratio: 1.045153e-01	ci left: 4.953544e-04	ci right 5.503397e-04	k: 1405	n:2690000
Cons ci ratio: 1.766143e-03	ci left: 6.462382e-01	ci right 6.473809e-01	k: 1739918	n:2690000
KS ci ratio: 1.230187e-01	ci left: 3.541083e-04	ci right 4.008816e-04	k: 1014	n:2690000
RSPH10B   2690000 perm   3354 sec   (802 perm/sec)   p_kst 3.769517e-04   p_cons 6.468097e-01   p_joint 5.223048e-04

Joint ci ratio: 1.042560e-01	ci left: 4.960447e-04	ci right 5.509617e-04	k: 1412	n:2700000
Cons ci ratio: 1.762831e-03	ci left: 6.462492e-01	ci right 6.473898e-01	k: 1746413	n:2700000
KS ci ratio: 1.226566e-01	ci left: 3.549507e-04	ci right 4.016873e-04	k: 1020	n:2700000
RSPH10B   2700000 perm   3376 sec   (800 perm/sec)   p_kst 3.777778e-04   p_cons 6.468196e-01   p_joint 5.229630e-04

Joint ci ratio: 1.039621e-01	ci left: 4.970895e-04	ci right 5.519575e-04	k: 1420	n:2710000
Cons ci ratio: 1.759540e-03	ci left: 6.462594e-01	ci right 6.473979e-01	k: 1752906	n:2710000
KS ci ratio: 1.224170e-01	ci left: 3.550717e-04	ci right 4.017263e-04	k: 1024	n:2710000
RSPH10B   2710000 perm   3399 sec   (797 perm/sec)   p_kst 3.778598e-04   p_cons 6.468288e-01   p_joint 5.239852e-04

Joint ci ratio: 1.037433e-01	ci left: 4.974105e-04	ci right 5.521914e-04	k: 1426	n:2720000
Cons ci ratio: 1.756231e-03	ci left: 6.462791e-01	ci right 6.474155e-01	k: 1759425	n:2720000
KS ci ratio: 1.222383e-01	ci left: 3.548355e-04	ci right 4.013860e-04	k: 1027	n:2720000
RSPH10B   2720000 perm   3422 sec   (795 perm/sec)   p_kst 3.775735e-04   p_cons 6.468474e-01   p_joint 5.242647e-04

Joint ci ratio: 1.035620e-01	ci left: 4.973725e-04	ci right 5.520476e-04	k: 1431	n:2730000
Cons ci ratio: 1.753069e-03	ci left: 6.462653e-01	ci right 6.473996e-01	k: 1765853	n:2730000
KS ci ratio: 1.219421e-01	ci left: 3.553113e-04	ci right 4.018031e-04	k: 1032	n:2730000
RSPH10B   2730000 perm   3446 sec   (792 perm/sec)   p_kst 3.780220e-04   p_cons 6.468326e-01   p_joint 5.241758e-04

Joint ci ratio: 1.033098e-01	ci left: 4.980460e-04	ci right 5.526537e-04	k: 1438	n:2740000
Cons ci ratio: 1.749845e-03	ci left: 6.462721e-01	ci right 6.474043e-01	k: 1772337	n:2740000
KS ci ratio: 1.216480e-01	ci left: 3.557838e-04	ci right 4.022171e-04	k: 1037	n:2740000
RSPH10B   2740000 perm   3469 sec   (790 perm/sec)   p_kst 3.784672e-04   p_cons 6.468383e-01   p_joint 5.248175e-04

Joint ci ratio: 1.032023e-01	ci left: 4.972976e-04	ci right 5.517631e-04	k: 1441	n:2750000
Cons ci ratio: 1.746671e-03	ci left: 6.462704e-01	ci right 6.474006e-01	k: 1778798	n:2750000
KS ci ratio: 1.214143e-01	ci left: 3.559004e-04	ci right 4.022532e-04	k: 1041	n:2750000
RSPH10B   2750000 perm   3492 sec   (788 perm/sec)   p_kst 3.785455e-04   p_cons 6.468356e-01   p_joint 5.240000e-04

Joint ci ratio: 1.030952e-01	ci left: 4.965547e-04	ci right 5.508790e-04	k: 1444	n:2760000
Cons ci ratio: 1.743499e-03	ci left: 6.462728e-01	ci right 6.474009e-01	k: 1785270	n:2760000
KS ci ratio: 1.213561e-01	ci left: 3.549622e-04	ci right 4.011691e-04	k: 1042	n:2760000
RSPH10B   2760000 perm   3516 sec   (785 perm/sec)   p_kst 3.775362e-04   p_cons 6.468370e-01   p_joint 5.231884e-04

Joint ci ratio: 1.029884e-01	ci left: 4.958172e-04	ci right 5.500012e-04	k: 1447	n:2770000
Cons ci ratio: 1.740451e-03	ci left: 6.462469e-01	ci right 6.473730e-01	k: 1791664	n:2770000
KS ci ratio: 1.212400e-01	ci left: 3.543808e-04	ci right 4.004648e-04	k: 1044	n:2770000
RSPH10B   2770000 perm   3539 sec   (783 perm/sec)   p_kst 3.768953e-04   p_cons 6.468101e-01   p_joint 5.223827e-04

Joint ci ratio: 1.028464e-01	ci left: 4.954355e-04	ci right 5.494986e-04	k: 1451	n:2780000
Cons ci ratio: 1.737184e-03	ci left: 6.462832e-01	ci right 6.474072e-01	k: 1798230	n:2780000
KS ci ratio: 1.210664e-01	ci left: 3.541525e-04	ci right 4.001361e-04	k: 1047	n:2780000
RSPH10B   2780000 perm   3562 sec   (780 perm/sec)   p_kst 3.766187e-04   p_cons 6.468453e-01   p_joint 5.219424e-04

Joint ci ratio: 1.026698e-01	ci left: 4.954058e-04	ci right 5.493673e-04	k: 1456	n:2790000
Cons ci ratio: 1.734060e-03	ci left: 6.462862e-01	ci right 6.474082e-01	k: 1804704	n:2790000
KS ci ratio: 1.207786e-01	ci left: 3.546211e-04	ci right 4.005482e-04	k: 1052	n:2790000
RSPH10B   2790000 perm   3585 sec   (778 perm/sec)   p_kst 3.770609e-04   p_cons 6.468473e-01   p_joint 5.218638e-04

Joint ci ratio: 1.025292e-01	ci left: 4.950284e-04	ci right 5.488705e-04	k: 1460	n:2800000
Cons ci ratio: 1.731058e-03	ci left: 6.462616e-01	ci right 6.473816e-01	k: 1811101	n:2800000
KS ci ratio: 1.205498e-01	ci left: 3.547400e-04	ci right 4.005893e-04	k: 1056	n:2800000
RSPH10B   2800000 perm   3608 sec   (776 perm/sec)   p_kst 3.771429e-04   p_cons 6.468218e-01   p_joint 5.214286e-04

Joint ci ratio: 1.024942e-01	ci left: 4.936135e-04	ci right 5.472822e-04	k: 1461	n:2810000
Cons ci ratio: 1.728011e-03	ci left: 6.462529e-01	ci right 6.473710e-01	k: 1817542	n:2810000
KS ci ratio: 1.204360e-01	ci left: 3.541679e-04	ci right 3.998969e-04	k: 1058	n:2810000
RSPH10B   2810000 perm   3632 sec   (774 perm/sec)   p_kst 3.765125e-04   p_cons 6.468121e-01   p_joint 5.199288e-04

Joint ci ratio: 1.024592e-01	ci left: 4.922086e-04	ci right 5.457052e-04	k: 1462	n:2820000
Cons ci ratio: 1.724896e-03	ci left: 6.462670e-01	ci right 6.473830e-01	k: 1824047	n:2820000
KS ci ratio: 1.202657e-01	ci left: 3.539438e-04	ci right 3.995747e-04	k: 1061	n:2820000
RSPH10B   2820000 perm   3655 sec   (772 perm/sec)   p_kst 3.762411e-04   p_cons 6.468252e-01   p_joint 5.184397e-04

Joint ci ratio: 1.021455e-01	ci left: 4.935682e-04	ci right 5.470384e-04	k: 1471	n:2830000
Cons ci ratio: 1.721886e-03	ci left: 6.462573e-01	ci right 6.473714e-01	k: 1830485	n:2830000
KS ci ratio: 1.198713e-01	ci left: 3.550923e-04	ci right 4.007105e-04	k: 1068	n:2830000
RSPH10B   2830000 perm   3679 sec   (769 perm/sec)   p_kst 3.773852e-04   p_cons 6.468145e-01   p_joint 5.197880e-04

Joint ci ratio: 1.020070e-01	ci left: 4.932028e-04	ci right 5.465566e-04	k: 1475	n:2840000
Cons ci ratio: 1.718874e-03	ci left: 6.462522e-01	ci right 6.473644e-01	k: 1836936	n:2840000
KS ci ratio: 1.196476e-01	ci left: 3.552082e-04	ci right 4.007502e-04	k: 1072	n:2840000
RSPH10B   2840000 perm   3703 sec   (767 perm/sec)   p_kst 3.774648e-04   p_cons 6.468085e-01   p_joint 5.193662e-04

Joint ci ratio: 1.018347e-01	ci left: 4.931819e-04	ci right 5.464380e-04	k: 1480	n:2850000
Cons ci ratio: 1.715890e-03	ci left: 6.462441e-01	ci right 6.473542e-01	k: 1843378	n:2850000
KS ci ratio: 1.194807e-01	ci left: 3.549830e-04	ci right 4.004281e-04	k: 1075	n:2850000
RSPH10B   2850000 perm   3726 sec   (765 perm/sec)   p_kst 3.771930e-04   p_cons 6.467993e-01   p_joint 5.192982e-04

Joint ci ratio: 1.016632e-01	ci left: 4.931612e-04	ci right 5.463201e-04	k: 1485	n:2860000
Cons ci ratio: 1.712910e-03	ci left: 6.462391e-01	ci right 6.473473e-01	k: 1849829	n:2860000
KS ci ratio: 1.192593e-01	ci left: 3.550987e-04	ci right 4.004684e-04	k: 1079	n:2860000
RSPH10B   2860000 perm   3750 sec   (763 perm/sec)   p_kst 3.772727e-04   p_cons 6.467934e-01   p_joint 5.192308e-04

Joint ci ratio: 1.035634e-01	ci left: 4.731101e-04	ci right 5.251188e-04	k: 1431	n:2870000
Cons ci ratio: 1.709931e-03	ci left: 6.462380e-01	ci right 6.473443e-01	k: 1856291	n:2870000
KS ci ratio: 1.188199e-01	ci left: 3.565659e-04	ci right 4.019434e-04	k: 1087	n:2870000
RSPH10B   2870000 perm   3774 sec   (760 perm/sec)   p_kst 3.787456e-04   p_cons 6.467913e-01   p_joint 4.986063e-04

Joint ci ratio: 1.033471e-01	ci left: 4.734968e-04	ci right 5.254327e-04	k: 1437	n:2880000
Cons ci ratio: 1.706953e-03	ci left: 6.462407e-01	ci right 6.473451e-01	k: 1862764	n:2880000
KS ci ratio: 1.184936e-01	ci left: 3.573493e-04	ci right 4.026929e-04	k: 1093	n:2880000
RSPH10B   2880000 perm   3798 sec   (758 perm/sec)   p_kst 3.795139e-04   p_cons 6.467931e-01   p_joint 4.989583e-04

Joint ci ratio: 1.030964e-01	ci left: 4.742181e-04	ci right 5.260993e-04	k: 1444	n:2890000
Cons ci ratio: 1.704009e-03	ci left: 6.462386e-01	ci right 6.473410e-01	k: 1869223	n:2890000
KS ci ratio: 1.181699e-01	ci left: 3.581275e-04	ci right 4.034370e-04	k: 1099	n:2890000
RSPH10B   2890000 perm   3822 sec   (756 perm/sec)   p_kst 3.802768e-04   p_cons 6.467900e-01   p_joint 4.996540e-04

Joint ci ratio: 1.029540e-01	ci left: 4.739266e-04	ci right 5.257000e-04	k: 1448	n:2900000
Cons ci ratio: 1.701054e-03	ci left: 6.462434e-01	ci right 6.473439e-01	k: 1875702	n:2900000
KS ci ratio: 1.179557e-01	ci left: 3.582312e-04	ci right 4.034659e-04	k: 1103	n:2900000
RSPH10B   2900000 perm   3847 sec   (754 perm/sec)   p_kst 3.803448e-04   p_cons 6.467938e-01   p_joint 4.993103e-04

Joint ci ratio: 1.028122e-01	ci left: 4.736372e-04	ci right 5.253034e-04	k: 1452	n:2910000
Cons ci ratio: 1.698211e-03	ci left: 6.462223e-01	ci right 6.473210e-01	k: 1882106	n:2910000
KS ci ratio: 1.179557e-01	ci left: 3.570001e-04	ci right 4.020794e-04	k: 1103	n:2910000
RSPH10B   2910000 perm   3871 sec   (752 perm/sec)   p_kst 3.790378e-04   p_cons 6.467718e-01   p_joint 4.989691e-04

Joint ci ratio: 1.026710e-01	ci left: 4.733498e-04	ci right 5.249094e-04	k: 1456	n:2920000
Cons ci ratio: 1.695249e-03	ci left: 6.462371e-01	ci right 6.473339e-01	k: 1888614	n:2920000
KS ci ratio: 1.177958e-01	ci left: 3.567746e-04	ci right 4.017601e-04	k: 1106	n:2920000
RSPH10B   2920000 perm   3896 sec   (750 perm/sec)   p_kst 3.787671e-04   p_cons 6.467856e-01   p_joint 4.986301e-04

Joint ci ratio: 1.025304e-01	ci left: 4.730644e-04	ci right 5.245182e-04	k: 1460	n:2930000
Cons ci ratio: 1.692451e-03	ci left: 6.462118e-01	ci right 6.473067e-01	k: 1895005	n:2930000
KS ci ratio: 1.177959e-01	ci left: 3.555569e-04	ci right 4.003890e-04	k: 1106	n:2930000
RSPH10B   2930000 perm   3920 sec   (747 perm/sec)   p_kst 3.774744e-04   p_cons 6.467594e-01   p_joint 4.982935e-04

Joint ci ratio: 9.438218e-02	ci left: 5.587133e-04	ci right 6.143868e-04	k: 1723	n:2940000
Cons ci ratio: 1.689602e-03	ci left: 6.462040e-01	ci right 6.472971e-01	k: 1901447	n:2940000
KS ci ratio: 1.176366e-01	ci left: 3.553379e-04	ci right 4.000775e-04	k: 1109	n:2940000
RSPH10B   2940000 perm   3945 sec   (745 perm/sec)   p_kst 3.772109e-04   p_cons 6.467507e-01   p_joint 5.860544e-04

Joint ci ratio: 9.419113e-02	ci left: 5.591363e-04	ci right 6.147329e-04	k: 1730	n:2950000
Cons ci ratio: 1.686682e-03	ci left: 6.462197e-01	ci right 6.473109e-01	k: 1907958	n:2950000
KS ci ratio: 1.173725e-01	ci left: 3.557785e-04	ci right 4.004660e-04	k: 1114	n:2950000
RSPH10B   2950000 perm   3970 sec   (743 perm/sec)   p_kst 3.776271e-04   p_cons 6.467654e-01   p_joint 5.864407e-04

Joint ci ratio: 9.397419e-02	ci left: 5.598865e-04	ci right 6.154224e-04	k: 1738	n:2960000
Cons ci ratio: 1.683850e-03	ci left: 6.462153e-01	ci right 6.473047e-01	k: 1914410	n:2960000
KS ci ratio: 1.170580e-01	ci left: 3.565441e-04	ci right 4.011995e-04	k: 1120	n:2960000
RSPH10B   2960000 perm   3994 sec   (741 perm/sec)   p_kst 3.783784e-04   p_cons 6.467601e-01   p_joint 5.871622e-04

Joint ci ratio: 9.383940e-02	ci left: 5.596453e-04	ci right 6.150733e-04	k: 1743	n:2970000
Cons ci ratio: 1.681013e-03	ci left: 6.462160e-01	ci right 6.473036e-01	k: 1920877	n:2970000
KS ci ratio: 1.169017e-01	ci left: 3.563242e-04	ci right 4.008883e-04	k: 1123	n:2970000
RSPH10B   2970000 perm   4019 sec   (739 perm/sec)   p_kst 3.781145e-04   p_cons 6.467599e-01   p_joint 5.868687e-04

Joint ci ratio: 9.501887e-02	ci left: 5.436783e-04	ci right 5.982394e-04	k: 1700	n:2980000
Cons ci ratio: 1.678052e-03	ci left: 6.462547e-01	ci right 6.473403e-01	k: 1927457	n:2980000
KS ci ratio: 1.167460e-01	ci left: 3.561058e-04	ci right 4.005792e-04	k: 1126	n:2980000
RSPH10B   2980000 perm   4044 sec   (737 perm/sec)   p_kst 3.778523e-04   p_cons 6.467977e-01   p_joint 5.704698e-04

Joint ci ratio: 9.346497e-02	ci left: 5.604745e-04	ci right 6.157510e-04	k: 1757	n:2990000
Cons ci ratio: 1.675258e-03	ci left: 6.462516e-01	ci right 6.473354e-01	k: 1933913	n:2990000
KS ci ratio: 1.166426e-01	ci left: 3.555641e-04	ci right 3.999279e-04	k: 1128	n:2990000
RSPH10B   2990000 perm   4068 sec   (735 perm/sec)   p_kst 3.772575e-04   p_cons 6.467936e-01   p_joint 5.876254e-04

Joint ci ratio: 9.325299e-02	ci left: 5.612107e-04	ci right 6.164274e-04	k: 1765	n:3000000
Cons ci ratio: 1.672378e-03	ci left: 6.462758e-01	ci right 6.473579e-01	k: 1940451	n:3000000
KS ci ratio: 1.164879e-01	ci left: 3.553498e-04	ci right 3.996239e-04	k: 1131	n:3000000
RSPH10B   3000000 perm   4096 sec   (732 perm/sec)   p_kst 3.770000e-04   p_cons 6.468170e-01   p_joint 5.883333e-04

Joint ci ratio: 9.309498e-02	ci left: 5.612931e-04	ci right 6.164192e-04	k: 1771	n:3010000
Cons ci ratio: 1.669645e-03	ci left: 6.462637e-01	ci right 6.473440e-01	k: 1946880	n:3010000
KS ci ratio: 1.161804e-01	ci left: 3.561046e-04	ci right 4.003476e-04	k: 1137	n:3010000
RSPH10B   3010000 perm   4123 sec   (730 perm/sec)   p_kst 3.777409e-04   p_cons 6.468040e-01   p_joint 5.883721e-04

Joint ci ratio: 9.293777e-02	ci left: 5.613750e-04	ci right 6.164111e-04	k: 1777	n:3020000
Cons ci ratio: 1.666954e-03	ci left: 6.462441e-01	ci right 6.473225e-01	k: 1953286	n:3020000
KS ci ratio: 1.159767e-01	ci left: 3.562115e-04	ci right 4.003849e-04	k: 1141	n:3020000
RSPH10B   3020000 perm   4149 sec   (728 perm/sec)   p_kst 3.778146e-04   p_cons 6.467834e-01   p_joint 5.884106e-04

Joint ci ratio: 9.280738e-02	ci left: 5.611341e-04	ci right 6.160652e-04	k: 1782	n:3030000
Cons ci ratio: 1.664231e-03	ci left: 6.462368e-01	ci right 6.473135e-01	k: 1959729	n:3030000
KS ci ratio: 1.157741e-01	ci left: 3.563177e-04	ci right 4.004219e-04	k: 1145	n:3030000
RSPH10B   3030000 perm   4174 sec   (726 perm/sec)   p_kst 3.778878e-04   p_cons 6.467752e-01   p_joint 5.881188e-04

Joint ci ratio: 9.259984e-02	ci left: 5.618589e-04	ci right 6.167312e-04	k: 1790	n:3040000
Cons ci ratio: 1.661480e-03	ci left: 6.462407e-01	ci right 6.473156e-01	k: 1966206	n:3040000
KS ci ratio: 1.155224e-01	ci left: 3.567428e-04	ci right 4.007970e-04	k: 1150	n:3040000
RSPH10B   3040000 perm   4199 sec   (724 perm/sec)   p_kst 3.782895e-04   p_cons 6.467783e-01   p_joint 5.888158e-04

Joint ci ratio: 9.252243e-02	ci left: 5.609775e-04	ci right 6.157155e-04	k: 1793	n:3050000
Cons ci ratio: 1.658734e-03	ci left: 6.462472e-01	ci right 6.473204e-01	k: 1972691	n:3050000
KS ci ratio: 1.154222e-01	ci left: 3.562099e-04	ci right 4.001576e-04	k: 1152	n:3050000
RSPH10B   3050000 perm   4225 sec   (722 perm/sec)   p_kst 3.777049e-04   p_cons 6.467839e-01   p_joint 5.878689e-04

Joint ci ratio: 9.236809e-02	ci left: 5.610597e-04	ci right 6.157095e-04	k: 1799	n:3060000
Cons ci ratio: 1.656106e-03	ci left: 6.462246e-01	ci right 6.472960e-01	k: 1979087	n:3060000
KS ci ratio: 1.152723e-01	ci left: 3.559979e-04	ci right 3.998585e-04	k: 1155	n:3060000
RSPH10B   3060000 perm   4251 sec   (720 perm/sec)   p_kst 3.774510e-04   p_cons 6.467605e-01   p_joint 5.879085e-04

Joint ci ratio: 9.226566e-02	ci left: 5.605050e-04	ci right 6.150370e-04	k: 1803	n:3070000
Cons ci ratio: 1.653419e-03	ci left: 6.462220e-01	ci right 6.472917e-01	k: 1985544	n:3070000
KS ci ratio: 1.150238e-01	ci left: 3.564201e-04	ci right 4.002316e-04	k: 1160	n:3070000
RSPH10B   3070000 perm   4276 sec   (718 perm/sec)   p_kst 3.778502e-04   p_cons 6.467570e-01   p_joint 5.872964e-04

Joint ci ratio: 9.218908e-02	ci left: 5.596368e-04	ci right 6.140366e-04	k: 1806	n:3080000
Cons ci ratio: 1.650750e-03	ci left: 6.462182e-01	ci right 6.472861e-01	k: 1991997	n:3080000
KS ci ratio: 1.149744e-01	ci left: 3.555782e-04	ci right 3.992662e-04	k: 1161	n:3080000
RSPH10B   3080000 perm   4302 sec   (716 perm/sec)   p_kst 3.769481e-04   p_cons 6.467523e-01   p_joint 5.863636e-04

Joint ci ratio: 9.328022e-02	ci left: 5.445484e-04	ci right 5.981423e-04	k: 1764	n:3090000
Cons ci ratio: 1.648003e-03	ci left: 6.462396e-01	ci right 6.473058e-01	k: 1998528	n:3090000
KS ci ratio: 1.148262e-01	ci left: 3.553705e-04	ci right 3.989728e-04	k: 1164	n:3090000
RSPH10B   3090000 perm   4327 sec   (714 perm/sec)   p_kst 3.766990e-04   p_cons 6.467728e-01   p_joint 5.708738e-04

Joint ci ratio: 9.312207e-02	ci left: 5.446822e-04	ci right 5.981934e-04	k: 1770	n:3100000
Cons ci ratio: 1.645280e-03	ci left: 6.462576e-01	ci right 6.473221e-01	k: 2005049	n:3100000
KS ci ratio: 1.147278e-01	ci left: 3.548507e-04	ci right 3.983495e-04	k: 1166	n:3100000
RSPH10B   3100000 perm   4353 sec   (712 perm/sec)   p_kst 3.761290e-04   p_cons 6.467900e-01   p_joint 5.709677e-04

Joint ci ratio: 9.280808e-02	ci left: 5.466996e-04	ci right 6.002181e-04	k: 1782	n:3110000
Cons ci ratio: 1.642593e-03	ci left: 6.462698e-01	ci right 6.473325e-01	k: 2011552	n:3110000
KS ci ratio: 1.143365e-01	ci left: 3.562084e-04	ci right 3.997146e-04	k: 1174	n:3110000
RSPH10B   3110000 perm   4379 sec   (710 perm/sec)   p_kst 3.774920e-04   p_cons 6.468013e-01   p_joint 5.729904e-04

Joint ci ratio: 9.270418e-02	ci left: 5.461997e-04	ci right 5.996061e-04	k: 1786	n:3120000
Cons ci ratio: 1.640057e-03	ci left: 6.462431e-01	ci right 6.473041e-01	k: 2017934	n:3120000
KS ci ratio: 1.141909e-01	ci left: 3.560008e-04	ci right 3.994225e-04	k: 1177	n:3120000
RSPH10B   3120000 perm   4404 sec   (708 perm/sec)   p_kst 3.772436e-04   p_cons 6.467737e-01   p_joint 5.724359e-04

Joint ci ratio: 9.120991e-02	ci left: 5.628713e-04	ci right 6.169734e-04	k: 1845	n:3130000
Cons ci ratio: 1.637445e-03	ci left: 6.462411e-01	ci right 6.473005e-01	k: 2024393	n:3130000
KS ci ratio: 1.139011e-01	ci left: 3.567256e-04	ci right 4.001180e-04	k: 1183	n:3130000
RSPH10B   3130000 perm   4431 sec   (706 perm/sec)   p_kst 3.779553e-04   p_cons 6.467709e-01   p_joint 5.894569e-04

Joint ci ratio: 9.111128e-02	ci left: 5.623235e-04	ci right 6.163114e-04	k: 1849	n:3140000
Cons ci ratio: 1.634842e-03	ci left: 6.462401e-01	ci right 6.472978e-01	k: 2030855	n:3140000
KS ci ratio: 1.137571e-01	ci left: 3.565178e-04	ci right 3.998263e-04	k: 1186	n:3140000
RSPH10B   3140000 perm   4457 sec   (705 perm/sec)   p_kst 3.777070e-04   p_cons 6.467691e-01   p_joint 5.888535e-04

Joint ci ratio: 9.098842e-02	ci left: 5.620895e-04	ci right 6.159783e-04	k: 1854	n:3150000
Cons ci ratio: 1.632206e-03	ci left: 6.462519e-01	ci right 6.473079e-01	k: 2037357	n:3150000
KS ci ratio: 1.136614e-01	ci left: 3.560028e-04	ci right 3.992100e-04	k: 1188	n:3150000
RSPH10B   3150000 perm   4483 sec   (703 perm/sec)   p_kst 3.771429e-04   p_cons 6.467800e-01   p_joint 5.885714e-04

Joint ci ratio: 9.081721e-02	ci left: 5.624756e-04	ci right 6.162945e-04	k: 1861	n:3160000
Cons ci ratio: 1.629595e-03	ci left: 6.462601e-01	ci right 6.473144e-01	k: 2043848	n:3160000
KS ci ratio: 1.134232e-01	ci left: 3.564136e-04	ci right 3.995739e-04	k: 1193	n:3160000
RSPH10B   3160000 perm   4509 sec   (701 perm/sec)   p_kst 3.775316e-04   p_cons 6.467873e-01   p_joint 5.889241e-04

Joint ci ratio: 9.067124e-02	ci left: 5.625510e-04	ci right 6.162861e-04	k: 1867	n:3170000
Cons ci ratio: 1.627054e-03	ci left: 6.462521e-01	ci right 6.473047e-01	k: 2050288	n:3170000
KS ci ratio: 1.130921e-01	ci left: 3.574349e-04	ci right 4.005841e-04	k: 1200	n:3170000
RSPH10B   3170000 perm   4535 sec   (699 perm/sec)   p_kst 3.785489e-04   p_cons 6.467785e-01   p_joint 5.889590e-04

Joint ci ratio: 9.052597e-02	ci left: 5.626260e-04	ci right 6.162776e-04	k: 1873	n:3180000
Cons ci ratio: 1.624458e-03	ci left: 6.462631e-01	ci right 6.473140e-01	k: 2056788	n:3180000
KS ci ratio: 1.129042e-01	ci left: 3.575332e-04	ci right 4.006178e-04	k: 1204	n:3180000
RSPH10B   3180000 perm   4562 sec   (697 perm/sec)   p_kst 3.786164e-04   p_cons 6.467887e-01   p_joint 5.889937e-04

Joint ci ratio: 9.040546e-02	ci left: 5.623942e-04	ci right 6.159485e-04	k: 1878	n:3190000
Cons ci ratio: 1.621907e-03	ci left: 6.462645e-01	ci right 6.473139e-01	k: 2063258	n:3190000
KS ci ratio: 1.128575e-01	ci left: 3.567171e-04	ci right 3.996843e-04	k: 1205	n:3190000
RSPH10B   3190000 perm   4589 sec   (695 perm/sec)   p_kst 3.777429e-04   p_cons 6.467893e-01   p_joint 5.887147e-04

Joint ci ratio: 9.026146e-02	ci left: 5.624694e-04	ci right 6.159410e-04	k: 1884	n:3200000
Cons ci ratio: 1.619451e-03	ci left: 6.462429e-01	ci right 6.472906e-01	k: 2069654	n:3200000
KS ci ratio: 1.126708e-01	ci left: 3.568171e-04	ci right 3.997205e-04	k: 1209	n:3200000
RSPH10B   3200000 perm   4615 sec   (693 perm/sec)   p_kst 3.778125e-04   p_cons 6.467669e-01   p_joint 5.887500e-04

Joint ci ratio: 9.004671e-02	ci left: 5.634577e-04	ci right 6.168891e-04	k: 1893	n:3210000
Cons ci ratio: 1.616817e-03	ci left: 6.462747e-01	ci right 6.473207e-01	k: 2076221	n:3210000
KS ci ratio: 1.123462e-01	ci left: 3.578248e-04	ci right 4.007173e-04	k: 1216	n:3210000
RSPH10B   3210000 perm   4642 sec   (692 perm/sec)   p_kst 3.788162e-04   p_cons 6.467978e-01   p_joint 5.897196e-04

Joint ci ratio: 8.995180e-02	ci left: 5.629221e-04	ci right 6.162435e-04	k: 1897	n:3220000
Cons ci ratio: 1.614391e-03	ci left: 6.462509e-01	ci right 6.472954e-01	k: 2082610	n:3220000
KS ci ratio: 1.122540e-01	ci left: 3.573172e-04	ci right 4.001114e-04	k: 1218	n:3220000
RSPH10B   3220000 perm   4668 sec   (690 perm/sec)   p_kst 3.782609e-04   p_cons 6.467733e-01   p_joint 5.891304e-04

Joint ci ratio: 8.976280e-02	ci left: 5.636004e-04	ci right 6.168681e-04	k: 1905	n:3230000
Cons ci ratio: 1.611781e-03	ci left: 6.462828e-01	ci right 6.473256e-01	k: 2089178	n:3230000
KS ci ratio: 1.120703e-01	ci left: 3.574146e-04	ci right 4.001458e-04	k: 1222	n:3230000
RSPH10B   3230000 perm   4695 sec   (688 perm/sec)   p_kst 3.783282e-04   p_cons 6.468043e-01   p_joint 5.897833e-04

Joint ci ratio: 8.971579e-02	ci left: 5.624644e-04	ci right 6.155953e-04	k: 1907	n:3240000
Cons ci ratio: 1.609356e-03	ci left: 6.462654e-01	ci right 6.473066e-01	k: 2095587	n:3240000
KS ci ratio: 1.119788e-01	ci left: 3.569115e-04	ci right 3.995453e-04	k: 1224	n:3240000
RSPH10B   3240000 perm   4722 sec   (686 perm/sec)   p_kst 3.777778e-04   p_cons 6.467861e-01   p_joint 5.885802e-04

Joint ci ratio: 8.955166e-02	ci left: 5.628393e-04	ci right 6.159033e-04	k: 1914	n:3250000
Cons ci ratio: 1.606916e-03	ci left: 6.462551e-01	ci right 6.472947e-01	k: 2102019	n:3250000
KS ci ratio: 1.117964e-01	ci left: 3.570096e-04	ci right 3.995811e-04	k: 1228	n:3250000
RSPH10B   3250000 perm   4750 sec   (684 perm/sec)   p_kst 3.778462e-04   p_cons 6.467751e-01   p_joint 5.889231e-04

Joint ci ratio: 8.941169e-02	ci left: 5.629121e-04	ci right 6.158956e-04	k: 1920	n:3260000
Cons ci ratio: 1.604424e-03	ci left: 6.462634e-01	ci right 6.473014e-01	k: 2108511	n:3260000
KS ci ratio: 1.116149e-01	ci left: 3.571072e-04	ci right 3.996167e-04	k: 1232	n:3260000
RSPH10B   3260000 perm   4777 sec   (682 perm/sec)   p_kst 3.779141e-04   p_cons 6.467825e-01   p_joint 5.889571e-04

Joint ci ratio: 8.920294e-02	ci left: 5.638815e-04	ci right 6.168259e-04	k: 1929	n:3270000
Cons ci ratio: 1.601907e-03	ci left: 6.462817e-01	ci right 6.473181e-01	k: 2115036	n:3270000
KS ci ratio: 1.114794e-01	ci left: 3.569070e-04	ci right 3.993376e-04	k: 1235	n:3270000
RSPH10B   3270000 perm   4804 sec   (681 perm/sec)   p_kst 3.776758e-04   p_cons 6.468000e-01   p_joint 5.899083e-04

Joint ci ratio: 8.899563e-02	ci left: 5.648451e-04	ci right 6.177504e-04	k: 1938	n:3280000
Cons ci ratio: 1.599427e-03	ci left: 6.462928e-01	ci right 6.473276e-01	k: 2121538	n:3280000
KS ci ratio: 1.112098e-01	ci left: 3.575972e-04	ci right 4.000003e-04	k: 1241	n:3280000
RSPH10B   3280000 perm   4830 sec   (679 perm/sec)   p_kst 3.783537e-04   p_cons 6.468104e-01   p_joint 5.908537e-04

Joint ci ratio: 8.876697e-02	ci left: 5.661002e-04	ci right 6.189797e-04	k: 1948	n:3290000
Cons ci ratio: 1.596974e-03	ci left: 6.462997e-01	ci right 6.473329e-01	k: 2128026	n:3290000
KS ci ratio: 1.109421e-01	ci left: 3.582833e-04	ci right 4.006589e-04	k: 1247	n:3290000
RSPH10B   3290000 perm   4857 sec   (677 perm/sec)   p_kst 3.790274e-04   p_cons 6.468164e-01   p_joint 5.920973e-04

Joint ci ratio: 8.869877e-02	ci left: 5.652737e-04	ci right 6.180333e-04	k: 1951	n:3300000
Cons ci ratio: 1.594601e-03	ci left: 6.462865e-01	ci right 6.473181e-01	k: 2134448	n:3300000
KS ci ratio: 1.108533e-01	ci left: 3.577868e-04	ci right 4.000676e-04	k: 1249	n:3300000
RSPH10B   3300000 perm   4884 sec   (676 perm/sec)   p_kst 3.784848e-04   p_cons 6.468024e-01   p_joint 5.912121e-04

Joint ci ratio: 8.856277e-02	ci left: 5.653384e-04	ci right 6.180190e-04	k: 1957	n:3310000
Cons ci ratio: 1.592162e-03	ci left: 6.462954e-01	ci right 6.473255e-01	k: 2140943	n:3310000
KS ci ratio: 1.106323e-01	ci left: 3.581746e-04	ci right 4.004114e-04	k: 1254	n:3310000
RSPH10B   3310000 perm   4911 sec   (674 perm/sec)   p_kst 3.788520e-04   p_cons 6.468106e-01   p_joint 5.912387e-04

Joint ci ratio: 8.847247e-02	ci left: 5.648137e-04	ci right 6.173890e-04	k: 1961	n:3320000
Cons ci ratio: 1.589822e-03	ci left: 6.462790e-01	ci right 6.473075e-01	k: 2147354	n:3320000
KS ci ratio: 1.105883e-01	ci left: 3.573887e-04	ci right 3.995148e-04	k: 1255	n:3320000
RSPH10B   3320000 perm   4939 sec   (672 perm/sec)   p_kst 3.780120e-04   p_cons 6.467934e-01   p_joint 5.906627e-04

Joint ci ratio: 8.833750e-02	ci left: 5.648795e-04	ci right 6.173766e-04	k: 1967	n:3330000
Cons ci ratio: 1.587421e-03	ci left: 6.462834e-01	ci right 6.473104e-01	k: 2153834	n:3330000
KS ci ratio: 1.104126e-01	ci left: 3.574834e-04	ci right 3.995495e-04	k: 1259	n:3330000
RSPH10B   3330000 perm   4968 sec   (670 perm/sec)   p_kst 3.780781e-04   p_cons 6.467970e-01   p_joint 5.906907e-04

Joint ci ratio: 8.824788e-02	ci left: 5.643594e-04	ci right 6.167522e-04	k: 1971	n:3340000
Cons ci ratio: 1.585037e-03	ci left: 6.462856e-01	ci right 6.473111e-01	k: 2160307	n:3340000
KS ci ratio: 1.103688e-01	ci left: 3.567042e-04	ci right 3.986609e-04	k: 1260	n:3340000
RSPH10B   3340000 perm   4995 sec   (669 perm/sec)   p_kst 3.772455e-04   p_cons 6.467985e-01   p_joint 5.901198e-04

Joint ci ratio: 8.813623e-02	ci left: 5.641344e-04	ci right 6.164366e-04	k: 1976	n:3350000
Cons ci ratio: 1.582634e-03	ci left: 6.462969e-01	ci right 6.473208e-01	k: 2166810	n:3350000
KS ci ratio: 1.103251e-01	ci left: 3.559297e-04	ci right 3.977776e-04	k: 1261	n:3350000
RSPH10B   3350000 perm   5023 sec   (667 perm/sec)   p_kst 3.764179e-04   p_cons 6.468090e-01   p_joint 5.898507e-04

Joint ci ratio: 8.806948e-02	ci left: 5.633286e-04	ci right 6.155145e-04	k: 1979	n:3360000
Cons ci ratio: 1.580314e-03	ci left: 6.462869e-01	ci right 6.473093e-01	k: 2173242	n:3360000
KS ci ratio: 1.101943e-01	ci left: 3.557386e-04	ci right 3.975112e-04	k: 1264	n:3360000
RSPH10B   3360000 perm   5050 sec   (665 perm/sec)   p_kst 3.761905e-04   p_cons 6.467982e-01   p_joint 5.889881e-04

Joint ci ratio: 8.793634e-02	ci left: 5.633982e-04	ci right 6.155076e-04	k: 1985	n:3370000
Cons ci ratio: 1.577902e-03	ci left: 6.463066e-01	ci right 6.473275e-01	k: 2179774	n:3370000
KS ci ratio: 1.100204e-01	ci left: 3.558373e-04	ci right 3.975513e-04	k: 1268	n:3370000
RSPH10B   3370000 perm   5079 sec   (663 perm/sec)   p_kst 3.762611e-04   p_cons 6.468172e-01   p_joint 5.890208e-04

Joint ci ratio: 8.780380e-02	ci left: 5.634675e-04	ci right 6.155007e-04	k: 1991	n:3380000
Cons ci ratio: 1.575549e-03	ci left: 6.463124e-01	ci right 6.473318e-01	k: 2186259	n:3380000
KS ci ratio: 1.098475e-01	ci left: 3.559354e-04	ci right 3.975911e-04	k: 1272	n:3380000
RSPH10B   3380000 perm   5107 sec   (662 perm/sec)   p_kst 3.763314e-04   p_cons 6.468222e-01   p_joint 5.890533e-04

Joint ci ratio: 8.756231e-02	ci left: 5.649791e-04	ci right 6.170011e-04	k: 2002	n:3390000
Cons ci ratio: 1.573188e-03	ci left: 6.463234e-01	ci right 6.473413e-01	k: 2192762	n:3390000
KS ci ratio: 1.095466e-01	ci left: 3.568937e-04	ci right 3.985397e-04	k: 1279	n:3390000
RSPH10B   3390000 perm   5136 sec   (660 perm/sec)   p_kst 3.772861e-04   p_cons 6.468324e-01   p_joint 5.905605e-04

Joint ci ratio: 8.738794e-02	ci left: 5.656189e-04	ci right 6.175907e-04	k: 2010	n:3400000
Cons ci ratio: 1.570880e-03	ci left: 6.463220e-01	ci right 6.473384e-01	k: 2199223	n:3400000
KS ci ratio: 1.092907e-01	ci left: 3.575604e-04	ci right 3.991805e-04	k: 1285	n:3400000
RSPH10B   3400000 perm   5164 sec   (658 perm/sec)   p_kst 3.779412e-04   p_cons 6.468303e-01   p_joint 5.911765e-04

Joint ci ratio: 8.721461e-02	ci left: 5.662550e-04	ci right 6.181769e-04	k: 2018	n:3410000
Cons ci ratio: 1.568581e-03	ci left: 6.463209e-01	ci right 6.473358e-01	k: 2205685	n:3410000
KS ci ratio: 1.091212e-01	ci left: 3.576529e-04	ci right 3.992150e-04	k: 1289	n:3410000
RSPH10B   3410000 perm   5192 sec   (657 perm/sec)   p_kst 3.780059e-04   p_cons 6.468284e-01   p_joint 5.917889e-04

Joint ci ratio: 8.708531e-02	ci left: 5.663154e-04	ci right 6.181619e-04	k: 2024	n:3420000
Cons ci ratio: 1.566270e-03	ci left: 6.463265e-01	ci right 6.473399e-01	k: 2212170	n:3420000
KS ci ratio: 1.088682e-01	ci left: 3.583137e-04	ci right 3.998499e-04	k: 1295	n:3420000
RSPH10B   3420000 perm   5220 sec   (655 perm/sec)   p_kst 3.786550e-04   p_cons 6.468333e-01   p_joint 5.918129e-04

Joint ci ratio: 8.695657e-02	ci left: 5.663756e-04	ci right 6.181470e-04	k: 2030	n:3430000
Cons ci ratio: 1.564030e-03	ci left: 6.463140e-01	ci right 6.473260e-01	k: 2218593	n:3430000
KS ci ratio: 1.086588e-01	ci left: 3.586871e-04	ci right 4.001815e-04	k: 1300	n:3430000
RSPH10B   3430000 perm   5248 sec   (654 perm/sec)   p_kst 3.790087e-04   p_cons 6.468201e-01   p_joint 5.918367e-04

Joint ci ratio: 8.680710e-02	ci left: 5.667198e-04	ci right 6.184292e-04	k: 2037	n:3440000
Cons ci ratio: 1.561735e-03	ci left: 6.463208e-01	ci right 6.473313e-01	k: 2225082	n:3440000
KS ci ratio: 1.084506e-01	ci left: 3.590584e-04	ci right 4.005111e-04	k: 1305	n:3440000
RSPH10B   3440000 perm   5276 sec   (652 perm/sec)   p_kst 3.793605e-04   p_cons 6.468262e-01   p_joint 5.921512e-04

Joint ci ratio: 8.674331e-02	ci left: 5.659278e-04	ci right 6.175251e-04	k: 2040	n:3450000
Cons ci ratio: 1.559487e-03	ci left: 6.463165e-01	ci right 6.473255e-01	k: 2231533	n:3450000
KS ci ratio: 1.083677e-01	ci left: 3.585817e-04	ci right 3.999456e-04	k: 1307	n:3450000
RSPH10B   3450000 perm   5306 sec   (650 perm/sec)   p_kst 3.788406e-04   p_cons 6.468212e-01   p_joint 5.913043e-04

Joint ci ratio: 8.667967e-02	ci left: 5.651404e-04	ci right 6.166262e-04	k: 2043	n:3460000
Cons ci ratio: 1.557172e-03	ci left: 6.463346e-01	ci right 6.473421e-01	k: 2238061	n:3460000
KS ci ratio: 1.082850e-01	ci left: 3.581077e-04	ci right 3.993834e-04	k: 1309	n:3460000
RSPH10B   3460000 perm   5334 sec   (649 perm/sec)   p_kst 3.783237e-04   p_cons 6.468384e-01   p_joint 5.904624e-04

Joint ci ratio: 8.653161e-02	ci left: 5.654854e-04	ci right 6.169101e-04	k: 2050	n:3470000
Cons ci ratio: 1.554895e-03	ci left: 6.463447e-01	ci right 6.473507e-01	k: 2244562	n:3470000
KS ci ratio: 1.081612e-01	ci left: 3.579168e-04	ci right 3.991204e-04	k: 1312	n:3470000
RSPH10B   3470000 perm   5363 sec   (647 perm/sec)   p_kst 3.780980e-04   p_cons 6.468478e-01   p_joint 5.907781e-04

Joint ci ratio: 8.646843e-02	ci left: 5.647038e-04	ci right 6.160181e-04	k: 2053	n:3480000
Cons ci ratio: 1.552632e-03	ci left: 6.463536e-01	ci right 6.473582e-01	k: 2251059	n:3480000
KS ci ratio: 1.081201e-01	ci left: 3.571679e-04	ci right 3.982686e-04	k: 1313	n:3480000
RSPH10B   3480000 perm   5393 sec   (645 perm/sec)   p_kst 3.772989e-04   p_cons 6.468560e-01   p_joint 5.899425e-04

Joint ci ratio: 8.632145e-02	ci left: 5.650482e-04	ci right 6.163021e-04	k: 2060	n:3490000
Cons ci ratio: 1.550328e-03	ci left: 6.463771e-01	ci right 6.473802e-01	k: 2257607	n:3490000
KS ci ratio: 1.079559e-01	ci left: 3.572596e-04	ci right 3.983045e-04	k: 1317	n:3490000
RSPH10B   3490000 perm   5422 sec   (644 perm/sec)   p_kst 3.773639e-04   p_cons 6.468788e-01   p_joint 5.902579e-04

Joint ci ratio: 8.627965e-02	ci left: 5.639928e-04	ci right 6.151250e-04	k: 2062	n:3500000
Cons ci ratio: 1.548184e-03	ci left: 6.463564e-01	ci right 6.473582e-01	k: 2264001	n:3500000
KS ci ratio: 1.079150e-01	ci left: 3.565169e-04	ci right 3.974600e-04	k: 1318	n:3500000
RSPH10B   3500000 perm   5451 sec   (642 perm/sec)   p_kst 3.765714e-04   p_cons 6.468574e-01   p_joint 5.891429e-04

Joint ci ratio: 8.611282e-02	ci left: 5.646161e-04	ci right 6.157008e-04	k: 2070	n:3510000
Cons ci ratio: 1.545934e-03	ci left: 6.463701e-01	ci right 6.473704e-01	k: 2270515	n:3510000
KS ci ratio: 1.077925e-01	ci left: 3.563328e-04	ci right 3.972054e-04	k: 1321	n:3510000
RSPH10B   3510000 perm   5480 sec   (641 perm/sec)   p_kst 3.763533e-04   p_cons 6.468704e-01   p_joint 5.897436e-04

Joint ci ratio: 8.596764e-02	ci left: 5.649579e-04	ci right 6.159831e-04	k: 2077	n:3520000
Cons ci ratio: 1.543725e-03	ci left: 6.463740e-01	ci right 6.473729e-01	k: 2276995	n:3520000
KS ci ratio: 1.076704e-01	ci left: 3.561498e-04	ci right 3.969522e-04	k: 1324	n:3520000
RSPH10B   3520000 perm   5509 sec   (639 perm/sec)   p_kst 3.761364e-04   p_cons 6.468736e-01   p_joint 5.900568e-04

Joint ci ratio: 8.588504e-02	ci left: 5.644663e-04	ci right 6.153956e-04	k: 2081	n:3530000
Cons ci ratio: 1.541612e-03	ci left: 6.463524e-01	ci right 6.473499e-01	k: 2283385	n:3530000
KS ci ratio: 1.075893e-01	ci left: 3.556922e-04	ci right 3.964095e-04	k: 1326	n:3530000
RSPH10B   3530000 perm   5539 sec   (637 perm/sec)   p_kst 3.756374e-04   p_cons 6.468513e-01   p_joint 5.895184e-04

Joint ci ratio: 8.578211e-02	ci left: 5.642539e-04	ci right 6.150999e-04	k: 2086	n:3540000
Cons ci ratio: 1.539440e-03	ci left: 6.463513e-01	ci right 6.473473e-01	k: 2289847	n:3540000
KS ci ratio: 1.073871e-01	ci left: 3.560619e-04	ci right 3.967401e-04	k: 1331	n:3540000
RSPH10B   3540000 perm   5568 sec   (636 perm/sec)   p_kst 3.759887e-04   p_cons 6.468494e-01   p_joint 5.892655e-04

Joint ci ratio: 8.685054e-02	ci left: 5.486081e-04	ci right 5.986912e-04	k: 2035	n:3550000
Cons ci ratio: 1.537295e-03	ci left: 6.463445e-01	ci right 6.473392e-01	k: 2296289	n:3550000
KS ci ratio: 1.072262e-01	ci left: 3.561554e-04	ci right 3.967795e-04	k: 1335	n:3550000
RSPH10B   3550000 perm   5597 sec   (634 perm/sec)   p_kst 3.760563e-04   p_cons 6.468420e-01   p_joint 5.732394e-04

Joint ci ratio: 8.665918e-02	ci left: 5.495403e-04	ci right 5.995924e-04	k: 2044	n:3560000
Cons ci ratio: 1.535047e-03	ci left: 6.463712e-01	ci right 6.473645e-01	k: 2302850	n:3560000
KS ci ratio: 1.067874e-01	ci left: 3.581622e-04	ci right 3.988374e-04	k: 1346	n:3560000
RSPH10B   3560000 perm   5626 sec   (633 perm/sec)   p_kst 3.780899e-04   p_cons 6.468680e-01   p_joint 5.741573e-04

Joint ci ratio: 8.657457e-02	ci left: 5.490972e-04	ci right 5.990576e-04	k: 2048	n:3570000
Cons ci ratio: 1.532846e-03	ci left: 6.463866e-01	ci right 6.473784e-01	k: 2309371	n:3570000
KS ci ratio: 1.066687e-01	ci left: 3.579768e-04	ci right 3.985830e-04	k: 1349	n:3570000
RSPH10B   3570000 perm   5656 sec   (631 perm/sec)   p_kst 3.778711e-04   p_cons 6.468826e-01   p_joint 5.736695e-04

Joint ci ratio: 8.646914e-02	ci left: 5.489298e-04	ci right 5.988111e-04	k: 2053	n:3580000
Cons ci ratio: 1.530678e-03	ci left: 6.463952e-01	ci right 6.473856e-01	k: 2315868	n:3580000
KS ci ratio: 1.065898e-01	ci left: 3.575207e-04	ci right 3.980432e-04	k: 1351	n:3580000
RSPH10B   3580000 perm   5685 sec   (630 perm/sec)   p_kst 3.773743e-04   p_cons 6.468905e-01   p_joint 5.734637e-04

Joint ci ratio: 8.638509e-02	ci left: 5.484909e-04	ci right 5.982814e-04	k: 2057	n:3590000
Cons ci ratio: 1.528530e-03	ci left: 6.464001e-01	ci right 6.473891e-01	k: 2322352	n:3590000
KS ci ratio: 1.065504e-01	ci left: 3.567959e-04	ci right 3.972204e-04	k: 1352	n:3590000
RSPH10B   3590000 perm   5715 sec   (628 perm/sec)   p_kst 3.766017e-04   p_cons 6.468947e-01   p_joint 5.729805e-04

Joint ci ratio: 8.632223e-02	ci left: 5.477826e-04	ci right 5.974709e-04	k: 2060	n:3600000
Cons ci ratio: 1.526367e-03	ci left: 6.464124e-01	ci right 6.474001e-01	k: 2328863	n:3600000
KS ci ratio: 1.064325e-01	ci left: 3.566159e-04	ci right 3.969726e-04	k: 1355	n:3600000
RSPH10B   3600000 perm   5746 sec   (627 perm/sec)   p_kst 3.763889e-04   p_cons 6.469064e-01   p_joint 5.722222e-04

Joint ci ratio: 8.505175e-02	ci left: 5.630719e-04	ci right 6.133580e-04	k: 2122	n:3610000
Cons ci ratio: 1.524233e-03	ci left: 6.464186e-01	ci right 6.474049e-01	k: 2335352	n:3610000
KS ci ratio: 1.063150e-01	ci left: 3.564370e-04	ci right 3.967261e-04	k: 1358	n:3610000
RSPH10B   3610000 perm   5776 sec   (625 perm/sec)   p_kst 3.761773e-04   p_cons 6.469119e-01   p_joint 5.878116e-04

Joint ci ratio: 8.495179e-02	ci left: 5.628683e-04	ci right 6.130742e-04	k: 2127	n:3620000
Cons ci ratio: 1.522154e-03	ci left: 6.464110e-01	ci right 6.473959e-01	k: 2341791	n:3620000
KS ci ratio: 1.061199e-01	ci left: 3.567969e-04	ci right 3.970480e-04	k: 1363	n:3620000
RSPH10B   3620000 perm   5807 sec   (623 perm/sec)   p_kst 3.765193e-04   p_cons 6.469036e-01   p_joint 5.875691e-04

Joint ci ratio: 8.485217e-02	ci left: 5.626659e-04	ci right 6.127920e-04	k: 2132	n:3630000
Cons ci ratio: 1.520060e-03	ci left: 6.464103e-01	ci right 6.473939e-01	k: 2348255	n:3630000
KS ci ratio: 1.059647e-01	ci left: 3.568867e-04	ci right 3.970854e-04	k: 1367	n:3630000
RSPH10B   3630000 perm   5836 sec   (622 perm/sec)   p_kst 3.765840e-04   p_cons 6.469022e-01   p_joint 5.873278e-04

Joint ci ratio: 8.475290e-02	ci left: 5.624646e-04	ci right 6.125112e-04	k: 2137	n:3640000
Cons ci ratio: 1.517986e-03	ci left: 6.464063e-01	ci right 6.473885e-01	k: 2354707	n:3640000
KS ci ratio: 1.058487e-01	ci left: 3.567086e-04	ci right 3.968405e-04	k: 1370	n:3640000
RSPH10B   3640000 perm   5868 sec   (620 perm/sec)   p_kst 3.763736e-04   p_cons 6.468975e-01   p_joint 5.870879e-04

Joint ci ratio: 8.463423e-02	ci left: 5.625326e-04	ci right 6.125118e-04	k: 2143	n:3650000
Cons ci ratio: 1.515833e-03	ci left: 6.464289e-01	ci right 6.474098e-01	k: 2361256	n:3650000
KS ci ratio: 1.056562e-01	ci left: 3.570649e-04	ci right 3.971593e-04	k: 1375	n:3650000
RSPH10B   3650000 perm   5898 sec   (619 perm/sec)   p_kst 3.767123e-04   p_cons 6.469195e-01   p_joint 5.871233e-04

Joint ci ratio: 8.572132e-02	ci left: 5.465556e-04	ci right 5.957702e-04	k: 2089	n:3660000
Cons ci ratio: 1.513793e-03	ci left: 6.464197e-01	ci right 6.473992e-01	k: 2367689	n:3660000
KS ci ratio: 1.056179e-01	ci left: 3.563553e-04	ci right 3.963546e-04	k: 1376	n:3660000
RSPH10B   3660000 perm   5929 sec   (617 perm/sec)   p_kst 3.759563e-04   p_cons 6.469096e-01   p_joint 5.707650e-04

Joint ci ratio: 8.561897e-02	ci left: 5.463996e-04	ci right 5.955384e-04	k: 2094	n:3670000
Cons ci ratio: 1.511793e-03	ci left: 6.464012e-01	ci right 6.473795e-01	k: 2374088	n:3670000
KS ci ratio: 1.054648e-01	ci left: 3.564455e-04	ci right 3.963933e-04	k: 1380	n:3670000
RSPH10B   3670000 perm   5959 sec   (616 perm/sec)   p_kst 3.760218e-04   p_cons 6.468905e-01   p_joint 5.705722e-04

Joint ci ratio: 8.553737e-02	ci left: 5.459785e-04	ci right 5.950303e-04	k: 2098	n:3680000
Cons ci ratio: 1.509771e-03	ci left: 6.463919e-01	ci right 6.473688e-01	k: 2380520	n:3680000
KS ci ratio: 1.053885e-01	ci left: 3.560060e-04	ci right 3.958740e-04	k: 1382	n:3680000
RSPH10B   3680000 perm   5990 sec   (614 perm/sec)   p_kst 3.755435e-04   p_cons 6.468804e-01   p_joint 5.701087e-04

Joint ci ratio: 8.543568e-02	ci left: 5.458249e-04	ci right 5.948017e-04	k: 2103	n:3690000
Cons ci ratio: 1.507771e-03	ci left: 6.463779e-01	ci right 6.473535e-01	k: 2386935	n:3690000
KS ci ratio: 1.052364e-01	ci left: 3.560967e-04	ci right 3.959137e-04	k: 1386	n:3690000
RSPH10B   3690000 perm   6020 sec   (613 perm/sec)   p_kst 3.756098e-04   p_cons 6.468659e-01   p_joint 5.699187e-04

Joint ci ratio: 8.529390e-02	ci left: 5.462012e-04	ci right 5.951264e-04	k: 2110	n:3700000
Cons ci ratio: 1.505700e-03	ci left: 6.463884e-01	ci right 6.473627e-01	k: 2393440	n:3700000
KS ci ratio: 1.051607e-01	ci left: 3.556606e-04	ci right 3.953984e-04	k: 1388	n:3700000
RSPH10B   3700000 perm   6050 sec   (612 perm/sec)   p_kst 3.751351e-04   p_cons 6.468757e-01   p_joint 5.702703e-04

Joint ci ratio: 8.521322e-02	ci left: 5.457842e-04	ci right 5.946235e-04	k: 2114	n:3710000
Cons ci ratio: 1.503582e-03	ci left: 6.464156e-01	ci right 6.473885e-01	k: 2400007	n:3710000
KS ci ratio: 1.051229e-01	ci left: 3.549644e-04	ci right 3.946093e-04	k: 1389	n:3710000
RSPH10B   3710000 perm   6082 sec   (610 perm/sec)   p_kst 3.743935e-04   p_cons 6.469022e-01   p_joint 5.698113e-04

Joint ci ratio: 8.505249e-02	ci left: 5.464218e-04	ci right 5.952213e-04	k: 2122	n:3720000
Cons ci ratio: 1.501573e-03	ci left: 6.464125e-01	ci right 6.473841e-01	k: 2406462	n:3720000
KS ci ratio: 1.048967e-01	ci left: 3.555807e-04	ci right 3.952037e-04	k: 1395	n:3720000
RSPH10B   3720000 perm   6112 sec   (609 perm/sec)   p_kst 3.750000e-04   p_cons 6.468984e-01   p_joint 5.704301e-04

Joint ci ratio: 8.487275e-02	ci left: 5.473184e-04	ci right 5.960897e-04	k: 2131	n:3730000
Cons ci ratio: 1.499516e-03	ci left: 6.464260e-01	ci right 6.473963e-01	k: 2412979	n:3730000
KS ci ratio: 1.046720e-01	ci left: 3.561939e-04	ci right 3.957949e-04	k: 1401	n:3730000
RSPH10B   3730000 perm   6143 sec   (607 perm/sec)   p_kst 3.756032e-04   p_cons 6.469113e-01   p_joint 5.713137e-04

Joint ci ratio: 8.355009e-02	ci left: 5.636542e-04	ci right 6.130602e-04	k: 2199	n:3740000
Cons ci ratio: 1.497468e-03	ci left: 6.464395e-01	ci right 6.474084e-01	k: 2419496	n:3740000
KS ci ratio: 1.044487e-01	ci left: 3.568038e-04	ci right 3.963829e-04	k: 1407	n:3740000
RSPH10B   3740000 perm   6174 sec   (606 perm/sec)   p_kst 3.762032e-04   p_cons 6.469241e-01   p_joint 5.879679e-04

Joint ci ratio: 8.343638e-02	ci left: 5.637177e-04	ci right 6.130588e-04	k: 2205	n:3750000
Cons ci ratio: 1.495399e-03	ci left: 6.464619e-01	ci right 6.474296e-01	k: 2426047	n:3750000
KS ci ratio: 1.042637e-01	ci left: 3.571509e-04	ci right 3.966940e-04	k: 1412	n:3750000
RSPH10B   3750000 perm   6206 sec   (604 perm/sec)   p_kst 3.765333e-04   p_cons 6.469459e-01   p_joint 5.880000e-04

Joint ci ratio: 8.328548e-02	ci left: 5.643017e-04	ci right 6.136003e-04	k: 2213	n:3760000
Cons ci ratio: 1.493436e-03	ci left: 6.464542e-01	ci right 6.474206e-01	k: 2432485	n:3760000
KS ci ratio: 1.040063e-01	ci left: 3.580142e-04	ci right 3.975491e-04	k: 1419	n:3760000
RSPH10B   3760000 perm   6238 sec   (603 perm/sec)   p_kst 3.773936e-04   p_cons 6.469375e-01   p_joint 5.885638e-04

Joint ci ratio: 8.315412e-02	ci left: 5.646231e-04	ci right 6.138681e-04	k: 2220	n:3770000
Cons ci ratio: 1.491507e-03	ci left: 6.464388e-01	ci right 6.474039e-01	k: 2438894	n:3770000
KS ci ratio: 1.037145e-01	ci left: 3.591315e-04	ci right 3.986717e-04	k: 1427	n:3770000
RSPH10B   3770000 perm   6270 sec   (601 perm/sec)   p_kst 3.785146e-04   p_cons 6.469215e-01   p_joint 5.888594e-04

Joint ci ratio: 8.300474e-02	ci left: 5.652018e-04	ci right 6.144045e-04	k: 2228	n:3780000
Cons ci ratio: 1.489522e-03	ci left: 6.464426e-01	ci right 6.474064e-01	k: 2445375	n:3780000
KS ci ratio: 1.034612e-01	ci left: 3.599853e-04	ci right 3.995168e-04	k: 1434	n:3780000
RSPH10B   3780000 perm   6302 sec   (600 perm/sec)   p_kst 3.793651e-04   p_cons 6.469246e-01   p_joint 5.894180e-04

Joint ci ratio: 8.293038e-02	ci left: 5.647440e-04	ci right 6.138606e-04	k: 2232	n:3790000
Cons ci ratio: 1.487539e-03	ci left: 6.464484e-01	ci right 6.474110e-01	k: 2451864	n:3790000
KS ci ratio: 1.034252e-01	ci left: 3.592925e-04	ci right 3.987334e-04	k: 1435	n:3790000
RSPH10B   3790000 perm   6334 sec   (598 perm/sec)   p_kst 3.786280e-04   p_cons 6.469298e-01   p_joint 5.889182e-04

Joint ci ratio: 8.281919e-02	ci left: 5.648040e-04	ci right 6.138569e-04	k: 2238	n:3800000
Cons ci ratio: 1.485622e-03	ci left: 6.464361e-01	ci right 6.473974e-01	k: 2458284	n:3800000
KS ci ratio: 1.032815e-01	ci left: 3.593724e-04	ci right 3.987639e-04	k: 1439	n:3800000
RSPH10B   3800000 perm   6367 sec   (597 perm/sec)   p_kst 3.786842e-04   p_cons 6.469168e-01   p_joint 5.889474e-04

Joint ci ratio: 8.267161e-02	ci left: 5.653779e-04	ci right 6.143889e-04	k: 2246	n:3810000
Cons ci ratio: 1.483662e-03	ci left: 6.464395e-01	ci right 6.473996e-01	k: 2464764	n:3810000
KS ci ratio: 1.031741e-01	ci left: 3.591962e-04	ci right 3.985250e-04	k: 1442	n:3810000
RSPH10B   3810000 perm   6399 sec   (595 perm/sec)   p_kst 3.784777e-04   p_cons 6.469197e-01   p_joint 5.895013e-04

Joint ci ratio: 8.252481e-02	ci left: 5.659489e-04	ci right 6.149180e-04	k: 2254	n:3820000
Cons ci ratio: 1.481704e-03	ci left: 6.464448e-01	ci right 6.474036e-01	k: 2471251	n:3820000
KS ci ratio: 1.029602e-01	ci left: 3.597861e-04	ci right 3.990929e-04	k: 1448	n:3820000
RSPH10B   3820000 perm   6431 sec   (594 perm/sec)   p_kst 3.790576e-04   p_cons 6.469243e-01   p_joint 5.900524e-04

Joint ci ratio: 8.355066e-02	ci left: 5.504089e-04	ci right 5.986543e-04	k: 2199	n:3830000
Cons ci ratio: 1.479758e-03	ci left: 6.464485e-01	ci right 6.474061e-01	k: 2477732	n:3830000
KS ci ratio: 1.028184e-01	ci left: 3.598642e-04	ci right 3.991221e-04	k: 1452	n:3830000
RSPH10B   3830000 perm   6463 sec   (593 perm/sec)   p_kst 3.791123e-04   p_cons 6.469274e-01   p_joint 5.741514e-04

Joint ci ratio: 8.336137e-02	ci left: 5.515253e-04	ci right 5.997538e-04	k: 2209	n:3840000
Cons ci ratio: 1.477854e-03	ci left: 6.464418e-01	ci right 6.473981e-01	k: 2484173	n:3840000
KS ci ratio: 1.025364e-01	ci left: 3.609569e-04	ci right 4.002195e-04	k: 1460	n:3840000
RSPH10B   3840000 perm   6494 sec   (591 perm/sec)   p_kst 3.802083e-04   p_cons 6.469201e-01   p_joint 5.752604e-04

Joint ci ratio: 8.326724e-02	ci left: 5.513645e-04	ci right 5.995217e-04	k: 2214	n:3850000
Cons ci ratio: 1.475886e-03	ci left: 6.464572e-01	ci right 6.474122e-01	k: 2490699	n:3850000
KS ci ratio: 1.023614e-01	ci left: 3.612848e-04	ci right 4.005120e-04	k: 1465	n:3850000
RSPH10B   3850000 perm   6526 sec   (590 perm/sec)   p_kst 3.805195e-04   p_cons 6.469348e-01   p_joint 5.750649e-04

Joint ci ratio: 8.322972e-02	ci left: 5.504434e-04	ci right 5.984975e-04	k: 2216	n:3860000
Cons ci ratio: 1.473919e-03	ci left: 6.464745e-01	ci right 6.474283e-01	k: 2497233	n:3860000
KS ci ratio: 1.022917e-01	ci left: 3.608537e-04	ci right 4.000058e-04	k: 1467	n:3860000
RSPH10B   3860000 perm   6559 sec   (589 perm/sec)   p_kst 3.800518e-04   p_cons 6.469516e-01   p_joint 5.740933e-04

Joint ci ratio: 8.309862e-02	ci left: 5.507922e-04	ci right 5.987974e-04	k: 2223	n:3870000
Cons ci ratio: 1.471976e-03	ci left: 6.464869e-01	ci right 6.474395e-01	k: 2503748	n:3870000
KS ci ratio: 1.021526e-01	ci left: 3.609284e-04	ci right 4.000322e-04	k: 1471	n:3870000
RSPH10B   3870000 perm   6592 sec   (587 perm/sec)   p_kst 3.801034e-04   p_cons 6.469633e-01   p_joint 5.744186e-04

Joint ci ratio: 8.291238e-02	ci left: 5.518965e-04	ci right 5.998849e-04	k: 2233	n:3880000
Cons ci ratio: 1.470106e-03	ci left: 6.464786e-01	ci right 6.474299e-01	k: 2510183	n:3880000
KS ci ratio: 1.019450e-01	ci left: 3.615052e-04	ci right 4.005870e-04	k: 1477	n:3880000
RSPH10B   3880000 perm   6623 sec   (586 perm/sec)   p_kst 3.806701e-04   p_cons 6.469544e-01   p_joint 5.755155e-04

Joint ci ratio: 8.283827e-02	ci left: 5.514847e-04	ci right 5.993923e-04	k: 2237	n:3890000
Cons ci ratio: 1.468201e-03	ci left: 6.464837e-01	ci right 6.474338e-01	k: 2516670	n:3890000
KS ci ratio: 1.018761e-01	ci left: 3.610769e-04	ci right 4.000844e-04	k: 1479	n:3890000
RSPH10B   3890000 perm   6655 sec   (584 perm/sec)   p_kst 3.802057e-04   p_cons 6.469589e-01   p_joint 5.750643e-04

Joint ci ratio: 8.272744e-02	ci left: 5.515773e-04	ci right 5.994257e-04	k: 2243	n:3900000
Cons ci ratio: 1.466273e-03	ci left: 6.464983e-01	ci right 6.474472e-01	k: 2523194	n:3900000
KS ci ratio: 1.017388e-01	ci left: 3.611506e-04	ci right 4.001103e-04	k: 1483	n:3900000
RSPH10B   3900000 perm   6688 sec   (583 perm/sec)   p_kst 3.802564e-04   p_cons 6.469728e-01   p_joint 5.751282e-04

Joint ci ratio: 8.263544e-02	ci left: 5.514189e-04	ci right 5.991979e-04	k: 2248	n:3910000
Cons ci ratio: 1.464384e-03	ci left: 6.465028e-01	ci right 6.474504e-01	k: 2529679	n:3910000
KS ci ratio: 1.015678e-01	ci left: 3.614732e-04	ci right 4.003983e-04	k: 1488	n:3910000
RSPH10B   3910000 perm   6721 sec   (582 perm/sec)   p_kst 3.805627e-04   p_cons 6.469767e-01   p_joint 5.749361e-04

Joint ci ratio: 8.241579e-02	ci left: 5.530103e-04	ci right 6.007937e-04	k: 2260	n:3920000
Cons ci ratio: 1.462448e-03	ci left: 6.465244e-01	ci right 6.474708e-01	k: 2536231	n:3920000
KS ci ratio: 1.014316e-01	ci left: 3.615455e-04	ci right 4.004232e-04	k: 1492	n:3920000
RSPH10B   3920000 perm   6753 sec   (581 perm/sec)   p_kst 3.806122e-04   p_cons 6.469977e-01   p_joint 5.765306e-04

Joint ci ratio: 8.326773e-02	ci left: 5.401406e-04	ci right 5.873178e-04	k: 2214	n:3930000
Cons ci ratio: 1.460548e-03	ci left: 6.465369e-01	ci right 6.474822e-01	k: 2542748	n:3930000
KS ci ratio: 1.013299e-01	ci left: 3.613696e-04	ci right 4.001870e-04	k: 1495	n:3930000
RSPH10B   3930000 perm   6785 sec   (579 perm/sec)   p_kst 3.804071e-04   p_cons 6.470097e-01   p_joint 5.633588e-04

Joint ci ratio: 8.315518e-02	ci left: 5.402609e-04	ci right 5.873817e-04	k: 2220	n:3940000
Cons ci ratio: 1.458728e-03	ci left: 6.465266e-01	ci right 6.474706e-01	k: 2549175	n:3940000
KS ci ratio: 1.011947e-01	ci left: 3.614419e-04	ci right 4.002122e-04	k: 1499	n:3940000
RSPH10B   3940000 perm   6819 sec   (578 perm/sec)   p_kst 3.804569e-04   p_cons 6.469987e-01   p_joint 5.634518e-04

Joint ci ratio: 8.300579e-02	ci left: 5.408764e-04	ci right 5.879620e-04	k: 2228	n:3950000
Cons ci ratio: 1.456870e-03	ci left: 6.465305e-01	ci right 6.474733e-01	k: 2555658	n:3950000
KS ci ratio: 1.009929e-01	ci left: 3.620075e-04	ci right 4.007564e-04	k: 1505	n:3950000
RSPH10B   3950000 perm   6853 sec   (576 perm/sec)   p_kst 3.810127e-04   p_cons 6.470020e-01   p_joint 5.640506e-04

Joint ci ratio: 8.638741e-02	ci left: 4.972424e-04	ci right 5.423820e-04	k: 2057	n:3960000
Cons ci ratio: 1.455044e-03	ci left: 6.465263e-01	ci right 6.474679e-01	k: 2562109	n:3960000
KS ci ratio: 1.008924e-01	ci left: 3.618317e-04	ci right 4.005211e-04	k: 1508	n:3960000
RSPH10B   3960000 perm   6887 sec   (575 perm/sec)   p_kst 3.808081e-04   p_cons 6.469972e-01   p_joint 5.194444e-04

Joint ci ratio: 8.626175e-02	ci left: 4.974686e-04	ci right 5.425598e-04	k: 2063	n:3970000
Cons ci ratio: 1.453219e-03	ci left: 6.465241e-01	ci right 6.474646e-01	k: 2568568	n:3970000
KS ci ratio: 1.008591e-01	ci left: 3.611659e-04	ci right 3.997705e-04	k: 1509	n:3970000
RSPH10B   3970000 perm   6920 sec   (574 perm/sec)   p_kst 3.801008e-04   p_cons 6.469945e-01   p_joint 5.196474e-04

Joint ci ratio: 8.613663e-02	ci left: 4.976938e-04	ci right 5.427366e-04	k: 2069	n:3980000
Cons ci ratio: 1.451423e-03	ci left: 6.465152e-01	ci right 6.474545e-01	k: 2575000	n:3980000
KS ci ratio: 1.007257e-01	ci left: 3.612381e-04	ci right 3.997964e-04	k: 1513	n:3980000
RSPH10B   3980000 perm   6953 sec   (572 perm/sec)   p_kst 3.801508e-04   p_cons 6.469849e-01   p_joint 5.198492e-04

Joint ci ratio: 8.605354e-02	ci left: 4.974273e-04	ci right 5.424004e-04	k: 2073	n:3990000
Cons ci ratio: 1.449625e-03	ci left: 6.465088e-01	ci right 6.474469e-01	k: 2581442	n:3990000
KS ci ratio: 1.006261e-01	ci left: 3.610657e-04	ci right 3.995652e-04	k: 1516	n:3990000
RSPH10B   3990000 perm   6985 sec   (571 perm/sec)   p_kst 3.799499e-04   p_cons 6.469779e-01   p_joint 5.195489e-04

Joint ci ratio: 8.597069e-02	ci left: 4.971622e-04	ci right 5.420659e-04	k: 2077	n:4000000
Cons ci ratio: 1.447784e-03	ci left: 6.465182e-01	ci right 6.474551e-01	k: 2587947	n:4000000
KS ci ratio: 1.005268e-01	ci left: 3.608942e-04	ci right 3.993351e-04	k: 1519	n:4000000
RSPH10B   4000000 perm   7019 sec   (570 perm/sec)   p_kst 3.797500e-04   p_cons 6.469868e-01   p_joint 5.192500e-04

Joint ci ratio: 8.584683e-02	ci left: 4.973866e-04	ci right 5.422425e-04	k: 2083	n:4010000
Cons ci ratio: 1.445941e-03	ci left: 6.465303e-01	ci right 6.474660e-01	k: 2594463	n:4010000
KS ci ratio: 1.003947e-01	ci left: 3.609666e-04	ci right 3.993618e-04	k: 1523	n:4010000
RSPH10B   4010000 perm   7055 sec   (568 perm/sec)   p_kst 3.798005e-04   p_cons 6.469983e-01   p_joint 5.194514e-04

Joint ci ratio: 8.570300e-02	ci left: 4.978532e-04	ci right 5.426723e-04	k: 2090	n:4020000
Cons ci ratio: 1.444187e-03	ci left: 6.465164e-01	ci right 6.474510e-01	k: 2600875	n:4020000
KS ci ratio: 1.001649e-01	ci left: 3.617663e-04	ci right 4.001533e-04	k: 1530	n:4020000
RSPH10B   4020000 perm   7090 sec   (567 perm/sec)   p_kst 3.805970e-04   p_cons 6.469838e-01   p_joint 5.199005e-04

Joint ci ratio: 8.553949e-02	ci left: 4.985605e-04	ci right 5.433533e-04	k: 2098	n:4030000
Cons ci ratio: 1.442401e-03	ci left: 6.465151e-01	ci right 6.474485e-01	k: 2607337	n:4030000
KS ci ratio: 9.996921e-02	ci left: 3.623202e-04	ci right 4.006865e-04	k: 1536	n:4030000
RSPH10B   4030000 perm   7124 sec   (566 perm/sec)   p_kst 3.811414e-04   p_cons 6.469819e-01   p_joint 5.205955e-04

Outputting figure to mutsig2_images.part000000000151/RSPH10B.3_5378_4030000_0.00038114_0.64698_0.0005206.png
                gene_name: RSPH10B
               theta_stop: 0.100 
                    nperm: 4030000 
                     p_ks: 0.00038 
        ci_ks_bounds_left: 0.00036 
       ci_ks_bounds_right: 0.00040 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.00052 
     ci_joint_bounds_left: 0.00050 
    ci_joint_bounds_right: 0.00054 

Current progress: 56 percent done.
RSPO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.835664e-02	ci left: 5.009505e-01	ci right 5.206432e-01	k: 5108	n:10000
Cons ci ratio: 5.945362e-02	ci left: 2.939022e-01	ci right 3.120127e-01	k: 3029	n:10000
KS ci ratio: 3.508942e-02	ci left: 5.452950e-01	ci right 5.648729e-01	k: 5551	n:10000
RSPO3   10000 perm   2 sec   (5991 perm/sec)   p_kst 5.551000e-01   p_cons 3.029000e-01   p_joint 5.108000e-01

Outputting figure to mutsig2_images.part000000000151/RSPO3.3_839_10000_0.5551_0.3029_0.5108.png
                gene_name: RSPO3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 58 percent done.
RSRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.141202e-02	ci left: 4.626742e-01	ci right 4.823418e-01	k: 4725	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
RSRC1   10000 perm   2 sec   (6160 perm/sec)   p_kst 1   p_cons 4.725000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/RSRC1.3_1041_10000_1_0.4725_1.png
                gene_name: RSRC1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
RSRC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.311172e-02	ci left: 4.427095e-01	ci right 4.623181e-01	k: 4525	n:10000
KS ci ratio: 3.233084e-02	ci left: 5.854025e-01	ci right 6.047421e-01	k: 5951	n:10000
RSRC2   10000 perm   2 sec   (6177 perm/sec)   p_kst 5.951000e-01   p_cons 4.525000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/RSRC2.3_1379_10000_0.5951_0.4525_1.png
                gene_name: RSRC2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
RTBDN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.889213e-02	ci left: 3.816178e-01	ci right 4.008456e-01	k: 3912	n:10000
KS ci ratio: 8.971858e-03	ci left: 9.458575e-01	ci right 9.544778e-01	k: 9503	n:10000
RTBDN   10000 perm   2 sec   (6059 perm/sec)   p_kst 9.503000e-01   p_cons 3.912000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/RTBDN.3_814_10000_0.9503_0.3912_1.png
                gene_name: RTBDN
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
RUNDC2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.302053e-01	ci left: 7.766482e-02	ci right 8.857947e-02	k: 830	n:10000
Cons ci ratio: 6.485020e-02	ci left: 2.588428e-01	ci right 2.762928e-01	k: 2675	n:10000
KS ci ratio: 3.144643e-01	ci left: 1.289402e-02	ci right 1.779424e-02	k: 152	n:10000
RUNDC2A   10000 perm   2 sec   (6041 perm/sec)   p_kst 1.520000e-02   p_cons 2.675000e-01   p_joint 8.300000e-02

Joint ci ratio: 1.251624e-01	ci left: 4.381688e-02	ci right 4.971579e-02	k: 934	n:20000
Cons ci ratio: 4.525568e-02	ci left: 2.665859e-01	ci right 2.789802e-01	k: 5455	n:20000
KS ci ratio: 2.273197e-01	ci left: 1.298353e-02	ci right 1.635973e-02	k: 292	n:20000
RUNDC2A   20000 perm   4 sec   (5394 perm/sec)   p_kst 1.460000e-02   p_cons 2.727500e-01   p_joint 4.670000e-02

Joint ci ratio: 9.749212e-02	ci left: 4.863513e-02	ci right 5.365225e-02	k: 1533	n:30000
Cons ci ratio: 3.677504e-02	ci left: 2.696212e-01	ci right 2.797558e-01	k: 8240	n:30000
KS ci ratio: 1.790047e-01	ci left: 1.432368e-02	ci right 1.717122e-02	k: 471	n:30000
RUNDC2A   30000 perm   6 sec   (5126 perm/sec)   p_kst 1.570000e-02   p_cons 2.746667e-01   p_joint 5.110000e-02

Joint ci ratio: 1.035301e-01	ci left: 3.280592e-02	ci right 3.641205e-02	k: 1383	n:40000
Cons ci ratio: 3.171878e-02	ci left: 2.719217e-01	ci right 2.807108e-01	k: 11052	n:40000
KS ci ratio: 1.555683e-01	ci left: 1.440835e-02	ci right 1.686270e-02	k: 624	n:40000
RUNDC2A   40000 perm   8 sec   (4959 perm/sec)   p_kst 1.560000e-02   p_cons 2.763000e-01   p_joint 3.457500e-02

Joint ci ratio: 1.077666e-01	ci left: 2.438901e-02	ci right 2.718641e-02	k: 1288	n:50000
Cons ci ratio: 2.850733e-02	ci left: 2.704721e-01	ci right 2.783141e-01	k: 13719	n:50000
KS ci ratio: 1.376534e-01	ci left: 1.486038e-02	ci right 1.707633e-02	k: 797	n:50000
RUNDC2A   50000 perm   10 sec   (4789 perm/sec)   p_kst 1.594000e-02   p_cons 2.743800e-01   p_joint 2.576000e-02

Joint ci ratio: 9.603816e-02	ci left: 2.571767e-02	ci right 2.832835e-02	k: 1620	n:60000
Cons ci ratio: 2.599850e-02	ci left: 2.711974e-01	ci right 2.783577e-01	k: 16486	n:60000
KS ci ratio: 1.269871e-01	ci left: 1.463973e-02	ci right 1.664085e-02	k: 937	n:60000
RUNDC2A   60000 perm   13 sec   (4690 perm/sec)   p_kst 1.561667e-02   p_cons 2.747667e-01   p_joint 2.700000e-02

Joint ci ratio: 9.527027e-02	ci left: 2.248811e-02	ci right 2.475161e-02	k: 1652	n:70000
Cons ci ratio: 2.411214e-02	ci left: 2.707694e-01	ci right 2.773922e-01	k: 19185	n:70000
KS ci ratio: 1.167749e-01	ci left: 1.491694e-02	ci right 1.678065e-02	k: 1108	n:70000
RUNDC2A   70000 perm   15 sec   (4576 perm/sec)   p_kst 1.582857e-02   p_cons 2.740714e-01   p_joint 2.360000e-02

Joint ci ratio: 8.809910e-02	ci left: 2.308502e-02	ci right 2.522468e-02	k: 1931	n:80000
Cons ci ratio: 2.253280e-02	ci left: 2.713722e-01	ci right 2.775691e-01	k: 21957	n:80000
KS ci ratio: 1.090770e-01	ci left: 1.502021e-02	ci right 1.676516e-02	k: 1270	n:80000
RUNDC2A   80000 perm   18 sec   (4490 perm/sec)   p_kst 1.587500e-02   p_cons 2.744625e-01   p_joint 2.413750e-02

Joint ci ratio: 7.056067e-02	ci left: 3.198442e-02	ci right 3.433468e-02	k: 2983	n:90000
Cons ci ratio: 2.128495e-02	ci left: 2.707889e-01	ci right 2.766257e-01	k: 24633	n:90000
KS ci ratio: 1.029074e-01	ci left: 1.504953e-02	ci right 1.669300e-02	k: 1427	n:90000
RUNDC2A   90000 perm   20 sec   (4414 perm/sec)   p_kst 1.585556e-02   p_cons 2.737000e-01   p_joint 3.314444e-02

Joint ci ratio: 7.539615e-02	ci left: 2.532674e-02	ci right 2.732086e-02	k: 2631	n:100000
Cons ci ratio: 2.018918e-02	ci left: 2.710080e-01	ci right 2.765452e-01	k: 27377	n:100000
KS ci ratio: 9.947968e-02	ci left: 1.452882e-02	ci right 1.605949e-02	k: 1528	n:100000
RUNDC2A   100000 perm   23 sec   (4339 perm/sec)   p_kst 1.528000e-02   p_cons 2.737700e-01   p_joint 2.631000e-02

Outputting figure to mutsig2_images.part000000000151/RUNDC2A.3_1160_100000_0.01528_0.27377_0.02631.png
                gene_name: RUNDC2A
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 65 percent done.
RUNX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.792711e-02	ci left: 1.312962e-01	ci right 1.449153e-01	k: 1380	n:10000
Cons ci ratio: 7.188542e-02	ci left: 2.208930e-01	ci right 2.374651e-01	k: 2291	n:10000
KS ci ratio: 8.143879e-02	ci left: 1.803839e-01	ci right 1.957983e-01	k: 1880	n:10000
RUNX1   10000 perm   2 sec   (5565 perm/sec)   p_kst 1.880000e-01   p_cons 2.291000e-01   p_joint 1.380000e-01

Outputting figure to mutsig2_images.part000000000151/RUNX1.3_1524_10000_0.188_0.2291_0.138.png
                gene_name: RUNX1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 67 percent done.
RWDD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.388548e-02	ci left: 4.339301e-01	ci right 4.535027e-01	k: 4437	n:10000
Cons ci ratio: 1.277834e-02	ci left: 8.980579e-01	ci right 9.097056e-01	k: 9040	n:10000
KS ci ratio: 5.345604e-02	ci left: 3.402490e-01	ci right 3.590387e-01	k: 3496	n:10000
RWDD1   10000 perm   2 sec   (6527 perm/sec)   p_kst 3.496000e-01   p_cons 9.040000e-01   p_joint 4.437000e-01

Outputting figure to mutsig2_images.part000000000151/RWDD1.3_760_10000_0.3496_0.904_0.4437.png
                gene_name: RWDD1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 69 percent done.
RXFP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.202174e-01	ci left: 9.029438e-02	ci right 1.019421e-01	k: 960	n:10000
Cons ci ratio: 1.560780e-02	ci left: 8.563091e-01	ci right 8.698787e-01	k: 8632	n:10000
KS ci ratio: 1.833676e-01	ci left: 3.968114e-02	ci right 4.778736e-02	k: 436	n:10000
RXFP1   10000 perm   2 sec   (5745 perm/sec)   p_kst 4.360000e-02   p_cons 8.632000e-01   p_joint 9.600000e-02

Joint ci ratio: 7.723471e-02	ci left: 1.096759e-01	ci right 1.185366e-01	k: 2281	n:20000
Cons ci ratio: 1.094191e-02	ci left: 8.603889e-01	ci right 8.699047e-01	k: 17304	n:20000
KS ci ratio: 1.312415e-01	ci left: 3.989122e-02	ci right 4.554270e-02	k: 853	n:20000
RXFP1   20000 perm   4 sec   (5120 perm/sec)   p_kst 4.265000e-02   p_cons 8.652000e-01   p_joint 1.140500e-01

Joint ci ratio: 6.458430e-02	ci left: 1.058234e-01	ci right 1.129191e-01	k: 3280	n:30000
Cons ci ratio: 8.992416e-03	ci left: 8.597318e-01	ci right 8.675309e-01	k: 25910	n:30000
KS ci ratio: 1.080431e-01	ci left: 3.975795e-02	ci right 4.433128e-02	k: 1260	n:30000
RXFP1   30000 perm   6 sec   (4874 perm/sec)   p_kst 4.200000e-02   p_cons 8.636667e-01   p_joint 1.093333e-01

Joint ci ratio: 5.169098e-02	ci left: 1.224413e-01	ci right 1.289632e-01	k: 5027	n:40000
Cons ci ratio: 7.831037e-03	ci left: 8.589348e-01	ci right 8.657125e-01	k: 34494	n:40000
KS ci ratio: 9.357813e-02	ci left: 4.005507e-02	ci right 4.401176e-02	k: 1680	n:40000
RXFP1   40000 perm   8 sec   (4715 perm/sec)   p_kst 4.200000e-02   p_cons 8.623500e-01   p_joint 1.256750e-01

Outputting figure to mutsig2_images.part000000000151/RXFP1.3_2346_40000_0.042_0.86235_0.12568.png
                gene_name: RXFP1
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 71 percent done.
RXRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.624928e-02	ci left: 8.463146e-01	ci right 8.602789e-01	k: 8534	n:10000
Cons ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
KS ci ratio: 2.425669e-02	ci left: 7.142157e-01	ci right 7.318542e-01	k: 7231	n:10000
RXRB   10000 perm   2 sec   (6383 perm/sec)   p_kst 7.231000e-01   p_cons 5.464000e-01   p_joint 8.534000e-01

Outputting figure to mutsig2_images.part000000000151/RXRB.3_1642_10000_0.7231_0.5464_0.8534.png
                gene_name: RXRB
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 73 percent done.
RSL1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.800771e-02	ci left: 3.043136e-01	ci right 3.225952e-01	k: 3134	n:10000
Cons ci ratio: 8.469983e-02	ci left: 1.688761e-01	ci right 1.839129e-01	k: 1763	n:10000
KS ci ratio: 4.401905e-02	ci left: 4.324339e-01	ci right 4.519998e-01	k: 4422	n:10000
RSL1D1   10000 perm   2 sec   (6275 perm/sec)   p_kst 4.422000e-01   p_cons 1.763000e-01   p_joint 3.134000e-01

Outputting figure to mutsig2_images.part000000000151/RSL1D1.2_1509_10000_0.4422_0.1763_0.3134.png
                gene_name: RSL1D1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 75 percent done.
RSPO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.537586e-02	ci left: 8.598813e-01	ci right 8.733044e-01	k: 8667	n:10000
KS ci ratio: 1.991251e-02	ci left: 7.868508e-01	ci right 8.027771e-01	k: 7949	n:10000
RSPO1   10000 perm   1 sec   (6939 perm/sec)   p_kst 7.949000e-01   p_cons 8.667000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/RSPO1.2_812_10000_0.7949_0.8667_1.png
                gene_name: RSPO1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
RTCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.610159e-02	ci left: 6.836528e-01	ci right 7.018348e-01	k: 6928	n:10000
KS ci ratio: 1.887534e-02	ci left: 8.039987e-01	ci right 8.194193e-01	k: 8118	n:10000
RTCD1   10000 perm   1 sec   (6784 perm/sec)   p_kst 8.118000e-01   p_cons 6.928000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/RTCD1.2_1188_10000_0.8118_0.6928_1.png
                gene_name: RTCD1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
RTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.745679e-01	ci left: 4.379660e-02	ci right 5.226918e-02	k: 479	n:10000
Cons ci ratio: 6.793149e-02	ci left: 2.412404e-01	ci right 2.583056e-01	k: 2497	n:10000
KS ci ratio: 2.159387e-01	ci left: 2.844783e-02	ci right 3.542834e-02	k: 318	n:10000
RTN2   10000 perm   2 sec   (6444 perm/sec)   p_kst 3.180000e-02   p_cons 2.497000e-01   p_joint 4.790000e-02

Joint ci ratio: 7.509648e-02	ci left: 1.153793e-01	ci right 1.244316e-01	k: 2397	n:20000
Cons ci ratio: 4.786282e-02	ci left: 2.451016e-01	ci right 2.571708e-01	k: 5022	n:20000
KS ci ratio: 1.544545e-01	ci left: 2.878572e-02	ci right 3.365183e-02	k: 623	n:20000
RTN2   20000 perm   4 sec   (5633 perm/sec)   p_kst 3.115000e-02   p_cons 2.511000e-01   p_joint 1.198500e-01

Joint ci ratio: 7.484916e-02	ci left: 8.062273e-02	ci right 8.692482e-02	k: 2512	n:30000
Cons ci ratio: 3.911981e-02	ci left: 2.458363e-01	ci right 2.556787e-01	k: 7522	n:30000
KS ci ratio: 1.257663e-01	ci left: 2.939074e-02	ci right 3.336736e-02	k: 940	n:30000
RTN2   30000 perm   6 sec   (5347 perm/sec)   p_kst 3.133333e-02   p_cons 2.507333e-01   p_joint 8.373333e-02

Joint ci ratio: 8.235808e-02	ci left: 5.138828e-02	ci right 5.582681e-02	k: 2143	n:40000
Cons ci ratio: 3.368308e-02	ci left: 2.486707e-01	ci right 2.572152e-01	k: 10117	n:40000
KS ci ratio: 1.097630e-01	ci left: 2.920146e-02	ci right 3.261709e-02	k: 1235	n:40000
RTN2   40000 perm   8 sec   (5111 perm/sec)   p_kst 3.087500e-02   p_cons 2.529250e-01   p_joint 5.357500e-02

Joint ci ratio: 7.965349e-02	ci left: 4.435679e-02	ci right 4.805612e-02	k: 2309	n:50000
Cons ci ratio: 3.019660e-02	ci left: 2.482587e-01	ci right 2.558901e-01	k: 12603	n:50000
KS ci ratio: 9.853781e-02	ci left: 2.916622e-02	ci right 3.220859e-02	k: 1533	n:50000
RTN2   50000 perm   10 sec   (4955 perm/sec)   p_kst 3.066000e-02   p_cons 2.520600e-01   p_joint 4.618000e-02

Outputting figure to mutsig2_images.part000000000151/RTN2.2_1682_50000_0.03066_0.25206_0.04618.png
                gene_name: RTN2
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.048 

Current progress: 81 percent done.
RTN4RL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.824160e-02	ci left: 3.879889e-01	ci right 4.072708e-01	k: 3976	n:10000
Cons ci ratio: 5.784639e-02	ci left: 3.055038e-01	ci right 3.238042e-01	k: 3146	n:10000
KS ci ratio: 8.567447e-02	ci left: 1.656325e-01	ci right 1.805584e-01	k: 1730	n:10000
RTN4RL1   10000 perm   2 sec   (5918 perm/sec)   p_kst 1.730000e-01   p_cons 3.146000e-01   p_joint 3.976000e-01

Outputting figure to mutsig2_images.part000000000151/RTN4RL1.2_1334_10000_0.173_0.3146_0.3976.png
                gene_name: RTN4RL1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 83 percent done.
RTN4RL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.090890e-03	ci left: 9.647821e-01	ci right 9.717416e-01	k: 9684	n:10000
Cons ci ratio: 7.494614e-02	ci left: 2.066861e-01	ci right 2.228804e-01	k: 2147	n:10000
KS ci ratio: 5.547877e-02	ci left: 3.236634e-01	ci right 3.422340e-01	k: 3329	n:10000
RTN4RL2   10000 perm   2 sec   (5630 perm/sec)   p_kst 3.329000e-01   p_cons 2.147000e-01   p_joint 9.684000e-01

Outputting figure to mutsig2_images.part000000000151/RTN4RL2.2_1275_10000_0.3329_0.2147_0.9684.png
                gene_name: RTN4RL2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 85 percent done.
RTP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.216491e-02	ci left: 2.755719e-01	ci right 2.933539e-01	k: 2844	n:10000
KS ci ratio: 3.326494e-02	ci left: 5.715581e-01	ci right 5.909945e-01	k: 5813	n:10000
RTP4   10000 perm   2 sec   (5637 perm/sec)   p_kst 5.813000e-01   p_cons 2.844000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/RTP4.2_749_10000_0.5813_0.2844_1.png
                gene_name: RTP4
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
RUFY4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.618554e-02	ci left: 3.181047e-01	ci right 3.365960e-01	k: 3273	n:10000
Cons ci ratio: 5.607094e-02	ci left: 3.189980e-01	ci right 3.375022e-01	k: 3282	n:10000
KS ci ratio: 5.644165e-02	ci left: 3.161198e-01	ci right 3.345821e-01	k: 3253	n:10000
RUFY4   10000 perm   2 sec   (5905 perm/sec)   p_kst 3.253000e-01   p_cons 3.282000e-01   p_joint 3.273000e-01

Outputting figure to mutsig2_images.part000000000151/RUFY4.2_1760_10000_0.3253_0.3282_0.3273.png
                gene_name: RUFY4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 88 percent done.
RUNX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.177090e-02	ci left: 4.583805e-01	ci right 4.780380e-01	k: 4682	n:10000
Cons ci ratio: 4.419792e-02	ci left: 4.304391e-01	ci right 4.499957e-01	k: 4402	n:10000
KS ci ratio: 9.875836e-02	ci left: 1.293382e-01	ci right 1.428746e-01	k: 1360	n:10000
RUNX3   10000 perm   2 sec   (6595 perm/sec)   p_kst 1.360000e-01   p_cons 4.402000e-01   p_joint 4.682000e-01

Outputting figure to mutsig2_images.part000000000151/RUNX3.2_1330_10000_0.136_0.4402_0.4682.png
                gene_name: RUNX3
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 90 percent done.
RXFP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.309032e-02	ci left: 7.337090e-01	ci right 7.509496e-01	k: 7424	n:10000
KS ci ratio: 1.314294e-02	ci left: 8.929274e-01	ci right 9.048391e-01	k: 8990	n:10000
RXFP4   10000 perm   2 sec   (6647 perm/sec)   p_kst 8.990000e-01   p_cons 7.424000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/RXFP4.2_1129_10000_0.899_0.7424_1.png
                gene_name: RXFP4
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
S100A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.594381e-02	ci left: 4.114968e-01	ci right 4.309491e-01	k: 4212	n:10000
Cons ci ratio: 8.310267e-02	ci left: 1.743827e-01	ci right 1.896031e-01	k: 1819	n:10000
KS ci ratio: 2.424458e-02	ci left: 7.144176e-01	ci right 7.320522e-01	k: 7233	n:10000
S100A2   10000 perm   2 sec   (5765 perm/sec)   p_kst 7.233000e-01   p_cons 1.819000e-01   p_joint 4.212000e-01

Outputting figure to mutsig2_images.part000000000151/S100A2.2_302_10000_0.7233_0.1819_0.4212.png
                gene_name: S100A2
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 94 percent done.
S100A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.181399e-02	ci left: 1.790063e-01	ci right 1.943767e-01	k: 1866	n:10000
Cons ci ratio: 4.833233e-02	ci left: 3.870929e-01	ci right 4.063673e-01	k: 3967	n:10000
KS ci ratio: 1.651998e-01	ci left: 4.888186e-02	ci right 5.778061e-02	k: 532	n:10000
S100A7   10000 perm   1 sec   (6891 perm/sec)   p_kst 5.320000e-02   p_cons 3.967000e-01   p_joint 1.866000e-01

Joint ci ratio: 4.890958e-02	ci left: 2.371182e-01	ci right 2.490566e-01	k: 4861	n:20000
Cons ci ratio: 2.943825e-02	ci left: 4.629628e-01	ci right 4.768459e-01	k: 9398	n:20000
KS ci ratio: 1.182289e-01	ci left: 4.901182e-02	ci right 5.521921e-02	k: 1041	n:20000
S100A7   20000 perm   3 sec   (6098 perm/sec)   p_kst 5.205000e-02   p_cons 4.699000e-01   p_joint 2.430500e-01

Joint ci ratio: 7.935560e-03	ci left: 8.869457e-01	ci right 8.940451e-01	k: 26716	n:30000
Cons ci ratio: 2.761890e-02	ci left: 3.961456e-01	ci right 4.072735e-01	k: 12051	n:30000
KS ci ratio: 9.782863e-02	ci left: 4.830953e-02	ci right 5.331125e-02	k: 1523	n:30000
S100A7   30000 perm   5 sec   (5763 perm/sec)   p_kst 5.076667e-02   p_cons 4.017000e-01   p_joint 8.905333e-01

Outputting figure to mutsig2_images.part000000000151/S100A7.2_314_30000_0.050767_0.4017_0.89053.png
                gene_name: S100A7
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.89 

Current progress: 96 percent done.
S100A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.640140e-02	ci left: 5.270673e-01	ci right 5.467112e-01	k: 5369	n:10000
Cons ci ratio: 5.134966e-02	ci left: 3.586369e-01	ci right 3.776400e-01	k: 3681	n:10000
KS ci ratio: 6.597726e-02	ci left: 2.522150e-01	ci right 2.695245e-01	k: 2608	n:10000
S100A9   10000 perm   2 sec   (6042 perm/sec)   p_kst 2.608000e-01   p_cons 3.681000e-01   p_joint 5.369000e-01

Outputting figure to mutsig2_images.part000000000151/S100A9.2_353_10000_0.2608_0.3681_0.5369.png
                gene_name: S100A9
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 98 percent done.
S100B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.760723e-03	ci left: 9.677317e-01	ci right 9.743901e-01	k: 9712	n:10000
KS ci ratio: 3.713967e-02	ci left: 5.170577e-01	ci right 5.367266e-01	k: 5269	n:10000
S100B   10000 perm   1 sec   (6953 perm/sec)   p_kst 5.269000e-01   p_cons 9.712000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000151/S100B.2_287_10000_0.5269_0.9712_1.png
                gene_name: S100B
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000151
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 151 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1538>
Subject: Job 9894122: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1538>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000152> was used as the working directory.
Started at Sat Oct  6 00:27:52 2012
Results reported at Sat Oct  6 00:38:16 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000152.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000152.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 152  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000152.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    722.73 sec.
    Max Memory :      3539 MB
    Max Swap   :      5884 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
152
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 152
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 152: processing genes 13614 - 13703
Calculating significance of each gene.
Using projection method.
13614	S100P	1
13615	S100PBP	5.138307e-01
13616	S100Z	2.277244e-01
13617	S1PR1	7.877275e-03
13618	S1PR2	1
13619	S1PR3	3.007954e-01
13620	S1PR4	1
13621	S1PR5	9.240333e-01
13622	SAA1	7.306920e-02
13623	SAA2	2.093452e-01
13624	SAA4	1.752331e-01
13625	SAAL1	3.507146e-01
13626	SAC3D1	1
13627	SACM1L	9.517325e-01
13628	SACS	1.166400e-02
13629	SAE1	1.634827e-01
13630	SAFB	6.935532e-01
13631	SAFB2	8.375089e-01
13632	SAG	8.436238e-01
13633	SAGE1	3.405744e-02
13634	SALL1	4.214036e-03
13635	SALL2	3.595636e-02
13636	SALL3	5.230964e-01
13637	SALL4	7.035285e-01
13638	SAMD1	1
13639	SAMD10	5.438746e-01
13640	SAMD11	6.370492e-01
13641	SAMD12	1.696435e-01
13642	SAMD13	1
13643	SAMD14	4.410275e-01
13644	SAMD3	4.054730e-01
13645	SAMD4A	5.974524e-02
13646	SAMD4B	1
13647	SAMD5	1
13648	SAMD7	5.974425e-01
13649	SAMD8	5.820595e-01
13650	SAMD9	3.097223e-02
13651	SAMD9L	5.089410e-03
13652	SAMHD1	1.397249e-01
13653	SAMM50	7.672277e-01
13654	SAMSN1	1.602834e-01
13655	SAP130	7.843963e-02
13656	SAP18	3.319663e-01
13657	SAP30	6.161668e-01
13658	SAP30BP	3.024004e-01
13659	SAP30L	1
13660	SAPS1	1
13661	SAPS2	9.806258e-01
13662	SAPS3	8.542112e-01
13663	SAR1A	6.742917e-01
13664	SAR1B	1
13665	SARDH	1.547667e-01
13666	SARM1	8.175666e-01
13667	SARNP	1
13668	SARS	7.537850e-01
13669	SARS2	7.054379e-01
13670	SART1	9.492110e-01
13671	SART3	9.871603e-01
13672	SASH1	6.127768e-01
13673	SASH3	8.950782e-01
13674	SASS6	7.700593e-01
13675	SAT1	1.284033e-03
13676	SAT2	1.996976e-01
13677	SATB1	8.678271e-01
13678	SATB2	7.145171e-01
13679	SATL1	4.065475e-01
13680	SAV1	1
13681	SBDS	1
13682	SBF1	9.990399e-01
13683	SBF2	8.099675e-01
13684	SBK1	4.482596e-01
13685	SBK2	1
13686	SBNO1	4.390372e-01
13687	SBNO2	1
13688	SBSN	3.613915e-02
13689	SC4MOL	7.225165e-01
13690	SC5DL	1.767657e-01
13691	SC65	8.511169e-01
13692	SCAF1	6.966128e-01
13693	SCAI	6.828040e-01
13694	SCAMP1	4.274111e-01
13695	SCAMP2	6.891689e-01
13696	SCAMP3	6.613086e-01
13697	SCAMP4	1
13698	SCAMP5	1.864996e-01
13699	SCAND1	1
13700	SCAND3	3.524042e-01
13701	SCAP	9.657715e-01
13702	SCAPER	9.405859e-01
13703	SCARA3	8.178193e-01
Done

Running MutSig 2:
Scatter job 152: processing genes 13614 - 13703
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SACS
Processing conservation and coverage...
72% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.852906e-02	ci left: 6.442810e-01	ci right 6.630294e-01	k: 6537	n:10000
KS ci ratio: 1.590375e-02	ci left: 8.517184e-01	ci right 8.654720e-01	k: 8587	n:10000
SACS   10000 perm   6 sec   (1714 perm/sec)   p_kst 8.587000e-01   p_cons 6.537000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SACS.44_13776_10000_0.8587_0.6537_1.png
                gene_name: SACS
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
SAMD9L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.761010e-02	ci left: 8.246276e-01	ci right 8.393784e-01	k: 8321	n:10000
Cons ci ratio: 5.215104e-03	ci left: 9.799492e-01	ci right 9.851642e-01	k: 9827	n:10000
KS ci ratio: 2.595455e-02	ci left: 6.860719e-01	ci right 7.042143e-01	k: 6952	n:10000
SAMD9L   10000 perm   3 sec   (3481 perm/sec)   p_kst 6.952000e-01   p_cons 9.827000e-01   p_joint 8.321000e-01

Outputting figure to mutsig2_images.part000000000152/SAMD9L.19_4759_10000_0.6952_0.9827_0.8321.png
                gene_name: SAMD9L
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 4 percent done.
SALL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.067289e-02	ci left: 6.106037e-01	ci right 6.297263e-01	k: 6202	n:10000
Cons ci ratio: 3.726648e-02	ci left: 5.153565e-01	ci right 5.350288e-01	k: 5252	n:10000
KS ci ratio: 3.764171e-02	ci left: 5.103535e-01	ci right 5.300347e-01	k: 5202	n:10000
SALL1   10000 perm   2 sec   (4127 perm/sec)   p_kst 5.202000e-01   p_cons 5.252000e-01   p_joint 6.202000e-01

Outputting figure to mutsig2_images.part000000000152/SALL1.16_3987_10000_0.5202_0.5252_0.6202.png
                gene_name: SALL1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 6 percent done.
SAMD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.034267e-01	ci left: 3.214923e-02	ci right 3.952436e-02	k: 357	n:10000
Cons ci ratio: 2.910462e-02	ci left: 6.351279e-01	ci right 6.539878e-01	k: 6446	n:10000
KS ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
SAMD9   10000 perm   3 sec   (3788 perm/sec)   p_kst 9.200000e-03   p_cons 6.446000e-01   p_joint 3.570000e-02

Joint ci ratio: 1.190142e-01	ci left: 4.838015e-02	ci right 5.455108e-02	k: 1028	n:20000
Cons ci ratio: 2.016501e-02	ci left: 6.472599e-01	ci right 6.604953e-01	k: 13078	n:20000
KS ci ratio: 2.830257e-01	ci left: 8.155818e-03	ci right 1.088963e-02	k: 189	n:20000
SAMD9   20000 perm   6 sec   (3430 perm/sec)   p_kst 9.450000e-03   p_cons 6.539000e-01   p_joint 5.140000e-02

Joint ci ratio: 1.357744e-01	ci left: 2.519514e-02	ci right 2.889722e-02	k: 810	n:30000
Cons ci ratio: 1.684612e-02	ci left: 6.380163e-01	ci right 6.488892e-01	k: 19304	n:30000
KS ci ratio: 2.278841e-01	ci left: 8.653395e-03	ci right 1.090973e-02	k: 292	n:30000
SAMD9   30000 perm   9 sec   (3274 perm/sec)   p_kst 9.733333e-03   p_cons 6.434667e-01   p_joint 2.700000e-02

Joint ci ratio: 1.002380e-01	ci left: 3.497617e-02	ci right 3.869146e-02	k: 1472	n:40000
Cons ci ratio: 1.436321e-02	ci left: 6.459043e-01	ci right 6.552738e-01	k: 26024	n:40000
KS ci ratio: 1.970149e-01	ci left: 8.834070e-03	ci right 1.078808e-02	k: 391	n:40000
SAMD9   40000 perm   13 sec   (3183 perm/sec)   p_kst 9.775000e-03   p_cons 6.506000e-01   p_joint 3.680000e-02

Joint ci ratio: 1.087227e-01	ci left: 2.396064e-02	ci right 2.673484e-02	k: 1266	n:50000
Cons ci ratio: 1.283221e-02	ci left: 6.469237e-01	ci right 6.552988e-01	k: 32556	n:50000
KS ci ratio: 1.746037e-01	ci left: 9.108141e-03	ci right 1.086945e-02	k: 498	n:50000
SAMD9   50000 perm   16 sec   (3115 perm/sec)   p_kst 9.960000e-03   p_cons 6.511200e-01   p_joint 2.532000e-02

Joint ci ratio: 1.020531e-01	ci left: 2.277386e-02	ci right 2.523915e-02	k: 1439	n:60000
Cons ci ratio: 1.168377e-02	ci left: 6.484737e-01	ci right 6.561115e-01	k: 39138	n:60000
KS ci ratio: 1.599042e-01	ci left: 9.123252e-03	ci right 1.072469e-02	k: 594	n:60000
SAMD9   60000 perm   20 sec   (3046 perm/sec)   p_kst 9.900000e-03   p_cons 6.523000e-01   p_joint 2.398333e-02

Joint ci ratio: 9.125104e-02	ci left: 2.451239e-02	ci right 2.687001e-02	k: 1797	n:70000
Cons ci ratio: 1.081539e-02	ci left: 6.488302e-01	ci right 6.559000e-01	k: 45666	n:70000
KS ci ratio: 1.458480e-01	ci left: 9.468872e-03	ci right 1.097214e-02	k: 714	n:70000
SAMD9   70000 perm   23 sec   (3002 perm/sec)   p_kst 1.020000e-02   p_cons 6.523714e-01   p_joint 2.567143e-02

Joint ci ratio: 8.842797e-02	ci left: 2.291379e-02	ci right 2.504592e-02	k: 1917	n:80000
Cons ci ratio: 1.009925e-02	ci left: 6.498525e-01	ci right 6.564613e-01	k: 52253	n:80000
KS ci ratio: 1.350283e-01	ci left: 9.720640e-03	ci right 1.114020e-02	k: 833	n:80000
SAMD9   80000 perm   27 sec   (2957 perm/sec)   p_kst 1.041250e-02   p_cons 6.531625e-01   p_joint 2.396250e-02

Joint ci ratio: 8.208863e-02	ci left: 2.369577e-02	ci right 2.573502e-02	k: 2223	n:90000
Cons ci ratio: 9.510613e-03	ci left: 6.505700e-01	ci right 6.567979e-01	k: 58832	n:90000
KS ci ratio: 1.239613e-01	ci left: 1.030727e-02	ci right 1.168008e-02	k: 988	n:90000
SAMD9   90000 perm   31 sec   (2921 perm/sec)   p_kst 1.097778e-02   p_cons 6.536889e-01   p_joint 2.470000e-02

Joint ci ratio: 8.443294e-02	ci left: 2.020836e-02	ci right 2.199957e-02	k: 2109	n:100000
Cons ci ratio: 9.035502e-03	ci left: 6.500804e-01	ci right 6.559908e-01	k: 65304	n:100000
KS ci ratio: 1.181387e-01	ci left: 1.024625e-02	ci right 1.154235e-02	k: 1088	n:100000
SAMD9   100000 perm   35 sec   (2875 perm/sec)   p_kst 1.088000e-02   p_cons 6.530400e-01   p_joint 2.109000e-02

Joint ci ratio: 7.493639e-02	ci left: 2.336237e-02	ci right 2.519010e-02	k: 2669	n:110000
Cons ci ratio: 8.593496e-03	ci left: 6.513534e-01	ci right 6.569840e-01	k: 71959	n:110000
KS ci ratio: 1.127313e-01	ci left: 1.025943e-02	ci right 1.149384e-02	k: 1195	n:110000
SAMD9   110000 perm   39 sec   (2842 perm/sec)   p_kst 1.086364e-02   p_cons 6.541727e-01   p_joint 2.426364e-02

Joint ci ratio: 7.333213e-02	ci left: 2.240474e-02	ci right 2.411841e-02	k: 2790	n:120000
Cons ci ratio: 8.225489e-03	ci left: 6.515929e-01	ci right 6.569830e-01	k: 78515	n:120000
KS ci ratio: 1.082989e-01	ci left: 1.021476e-02	ci right 1.139239e-02	k: 1295	n:120000
SAMD9   120000 perm   43 sec   (2806 perm/sec)   p_kst 1.079167e-02   p_cons 6.542917e-01   p_joint 2.325000e-02

Joint ci ratio: 7.331878e-02	ci left: 2.072594e-02	ci right 2.231089e-02	k: 2796	n:130000
Cons ci ratio: 7.889220e-03	ci left: 6.524780e-01	ci right 6.576536e-01	k: 85159	n:130000
KS ci ratio: 1.039380e-01	ci left: 1.026021e-02	ci right 1.139254e-02	k: 1406	n:130000
SAMD9   130000 perm   47 sec   (2772 perm/sec)   p_kst 1.081538e-02   p_cons 6.550692e-01   p_joint 2.150769e-02

Joint ci ratio: 6.128602e-02	ci left: 2.752200e-02	ci right 2.926904e-02	k: 3974	n:140000
Cons ci ratio: 7.944608e-03	ci left: 6.323717e-01	ci right 6.374227e-01	k: 88886	n:140000
KS ci ratio: 9.940487e-02	ci left: 1.043931e-02	ci right 1.153822e-02	k: 1537	n:140000
SAMD9   140000 perm   51 sec   (2736 perm/sec)   p_kst 1.097857e-02   p_cons 6.349000e-01   p_joint 2.838571e-02

Outputting figure to mutsig2_images.part000000000152/SAMD9.16_4774_140000_0.010979_0.6349_0.028386.png
                gene_name: SAMD9
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.029 

Current progress: 8 percent done.
SAGE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.966014e-02	ci left: 3.742535e-01	ci right 3.934142e-01	k: 3838	n:10000
Cons ci ratio: 6.536699e-02	ci left: 2.557759e-01	ci right 2.731615e-01	k: 2644	n:10000
KS ci ratio: 4.497748e-02	ci left: 4.218634e-01	ci right 4.413764e-01	k: 4316	n:10000
SAGE1   10000 perm   2 sec   (4576 perm/sec)   p_kst 4.316000e-01   p_cons 2.644000e-01   p_joint 3.838000e-01

Outputting figure to mutsig2_images.part000000000152/SAGE1.10_2791_10000_0.4316_0.2644_0.3838.png
                gene_name: SAGE1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 9 percent done.
SALL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.611774e-02	ci left: 1.357035e-01	ci right 1.495054e-01	k: 1425	n:10000
Cons ci ratio: 1.673668e-01	ci left: 4.763334e-02	ci right 5.642994e-02	k: 519	n:10000
KS ci ratio: 2.888270e-02	ci left: 6.386479e-01	ci right 6.574658e-01	k: 6481	n:10000
SALL2   10000 perm   2 sec   (4574 perm/sec)   p_kst 6.481000e-01   p_cons 5.190000e-02   p_joint 1.425000e-01

Joint ci ratio: 7.241124e-02	ci left: 1.231530e-01	ci right 1.324555e-01	k: 2555	n:20000
Cons ci ratio: 1.189533e-01	ci left: 4.842873e-02	ci right 5.460248e-02	k: 1029	n:20000
KS ci ratio: 1.988732e-02	ci left: 6.535376e-01	ci right 6.667158e-01	k: 13203	n:20000
SALL2   20000 perm   5 sec   (4107 perm/sec)   p_kst 6.601500e-01   p_cons 5.145000e-02   p_joint 1.277500e-01

Joint ci ratio: 5.917698e-02	ci left: 1.238111e-01	ci right 1.313945e-01	k: 3827	n:30000
Cons ci ratio: 9.604899e-02	ci left: 5.006810e-02	ci right 5.515231e-02	k: 1577	n:30000
KS ci ratio: 1.678009e-02	ci left: 6.398223e-01	ci right 6.506829e-01	k: 19358	n:30000
SALL2   30000 perm   8 sec   (3957 perm/sec)   p_kst 6.452667e-01   p_cons 5.256667e-02   p_joint 1.275667e-01

Outputting figure to mutsig2_images.part000000000152/SALL2.9_3032_30000_0.64527_0.052567_0.12757.png
                gene_name: SALL2
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 11 percent done.
SBNO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.381047e-02	ci left: 3.372686e-01	ci right 3.560208e-01	k: 3466	n:10000
Cons ci ratio: 1.067731e-02	ci left: 9.258557e-01	ci right 9.358915e-01	k: 9310	n:10000
KS ci ratio: 8.318649e-02	ci left: 1.740876e-01	ci right 1.892983e-01	k: 1816	n:10000
SBNO1   10000 perm   3 sec   (3693 perm/sec)   p_kst 1.816000e-01   p_cons 9.310000e-01   p_joint 3.466000e-01

Outputting figure to mutsig2_images.part000000000152/SBNO1.9_4306_10000_0.1816_0.931_0.3466.png
                gene_name: SBNO1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 13 percent done.
SAP130
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.290783e-02	ci left: 1.750712e-01	ci right 1.903141e-01	k: 1826	n:10000
Cons ci ratio: 1.002993e-01	ci left: 1.258149e-01	ci right 1.391999e-01	k: 1324	n:10000
KS ci ratio: 7.176357e-02	ci left: 2.214853e-01	ci right 2.380724e-01	k: 2297	n:10000
SAP130   10000 perm   2 sec   (4009 perm/sec)   p_kst 2.297000e-01   p_cons 1.324000e-01   p_joint 1.826000e-01

Joint ci ratio: 5.972830e-02	ci left: 1.718809e-01	ci right 1.825131e-01	k: 3543	n:20000
Cons ci ratio: 7.170532e-02	ci left: 1.253190e-01	ci right 1.346889e-01	k: 2599	n:20000
KS ci ratio: 5.012231e-02	ci left: 2.282951e-01	ci right 2.400822e-01	k: 4683	n:20000
SAP130   20000 perm   6 sec   (3618 perm/sec)   p_kst 2.341500e-01   p_cons 1.299500e-01   p_joint 1.771500e-01

Outputting figure to mutsig2_images.part000000000152/SAP130.8_3336_20000_0.23415_0.12995_0.17715.png
                gene_name: SAP130
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 15 percent done.
SARDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.659627e-02	ci left: 3.149289e-01	ci right 3.333736e-01	k: 3241	n:10000
Cons ci ratio: 9.093456e-02	ci left: 1.495278e-01	ci right 1.638728e-01	k: 1566	n:10000
KS ci ratio: 4.996592e-02	ci left: 3.713681e-01	ci right 3.905013e-01	k: 3809	n:10000
SARDH   10000 perm   2 sec   (4593 perm/sec)   p_kst 3.809000e-01   p_cons 1.566000e-01   p_joint 3.241000e-01

Outputting figure to mutsig2_images.part000000000152/SARDH.8_2837_10000_0.3809_0.1566_0.3241.png
                gene_name: SARDH
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 17 percent done.
SCAND3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.710380e-02	ci left: 3.110592e-01	ci right 3.294457e-01	k: 3202	n:10000
Cons ci ratio: 5.166009e-02	ci left: 3.558529e-01	ci right 3.748256e-01	k: 3653	n:10000
KS ci ratio: 6.219546e-02	ci left: 2.753738e-01	ci right 2.931520e-01	k: 2842	n:10000
SCAND3   10000 perm   3 sec   (3847 perm/sec)   p_kst 2.842000e-01   p_cons 3.653000e-01   p_joint 3.202000e-01

Outputting figure to mutsig2_images.part000000000152/SCAND3.8_3994_10000_0.2842_0.3653_0.3202.png
                gene_name: SCAND3
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 19 percent done.
S1PR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.731428e-02	ci left: 3.094718e-01	ci right 3.278340e-01	k: 3186	n:10000
Cons ci ratio: 9.124547e-02	ci left: 1.486448e-01	ci right 1.629564e-01	k: 1557	n:10000
KS ci ratio: 4.191375e-02	ci left: 4.566832e-01	ci right 4.763364e-01	k: 4665	n:10000
S1PR1   10000 perm   2 sec   (5541 perm/sec)   p_kst 4.665000e-01   p_cons 1.557000e-01   p_joint 3.186000e-01

Outputting figure to mutsig2_images.part000000000152/S1PR1.7_1153_10000_0.4665_0.1557_0.3186.png
                gene_name: S1PR1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 21 percent done.
SBF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
Cons ci ratio: 1.399944e-01	ci left: 6.758933e-02	ci right 7.786125e-02	k: 726	n:10000
KS ci ratio: 1.169468e-01	ci left: 9.506351e-02	ci right 1.069701e-01	k: 1009	n:10000
SBF2   10000 perm   3 sec   (3506 perm/sec)   p_kst 1.009000e-01   p_cons 7.260000e-02   p_joint 4.450000e-02

Joint ci ratio: 1.072598e-01	ci left: 5.923278e-02	ci right 6.599506e-02	k: 1251	n:20000
Cons ci ratio: 9.965990e-02	ci left: 6.821079e-02	ci right 7.541429e-02	k: 1435	n:20000
KS ci ratio: 8.390194e-02	ci left: 9.425655e-02	ci right 1.025606e-01	k: 1967	n:20000
SBF2   20000 perm   6 sec   (3167 perm/sec)   p_kst 9.835000e-02   p_cons 7.175000e-02   p_joint 6.255000e-02

Joint ci ratio: 9.101331e-02	ci left: 5.557693e-02	ci right 6.090902e-02	k: 1746	n:30000
Cons ci ratio: 8.054963e-02	ci left: 7.021196e-02	ci right 7.613768e-02	k: 2194	n:30000
KS ci ratio: 7.038594e-02	ci left: 9.039242e-02	ci right 9.701984e-02	k: 2810	n:30000
SBF2   30000 perm   10 sec   (3123 perm/sec)   p_kst 9.366667e-02   p_cons 7.313333e-02   p_joint 5.820000e-02

Outputting figure to mutsig2_images.part000000000152/SBF2.7_5710_30000_0.093667_0.073133_0.0582.png
                gene_name: SBF2
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.061 

Current progress: 23 percent done.
SAFB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.174575e-02	ci left: 4.586800e-01	ci right 4.783383e-01	k: 4685	n:10000
Cons ci ratio: 7.446075e-02	ci left: 2.088557e-01	ci right 2.251095e-01	k: 2169	n:10000
KS ci ratio: 2.407510e-02	ci left: 7.172444e-01	ci right 7.348238e-01	k: 7261	n:10000
SAFB2   10000 perm   2 sec   (4675 perm/sec)   p_kst 7.261000e-01   p_cons 2.169000e-01   p_joint 4.685000e-01

Outputting figure to mutsig2_images.part000000000152/SAFB2.6_2946_10000_0.7261_0.2169_0.4685.png
                gene_name: SAFB2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 25 percent done.
SAMD4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.499060e-02	ci left: 2.064889e-01	ci right 2.226777e-01	k: 2145	n:10000
Cons ci ratio: 7.987348e-02	ci left: 1.862897e-01	ci right 2.018889e-01	k: 1940	n:10000
KS ci ratio: 6.985136e-02	ci left: 2.310633e-01	ci right 2.478887e-01	k: 2394	n:10000
SAMD4A   10000 perm   2 sec   (4253 perm/sec)   p_kst 2.394000e-01   p_cons 1.940000e-01   p_joint 2.145000e-01

Outputting figure to mutsig2_images.part000000000152/SAMD4A.6_2314_10000_0.2394_0.194_0.2145.png
                gene_name: SAMD4A
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 26 percent done.
SASH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.069396e-02	ci left: 3.646037e-01	ci right 3.836696e-01	k: 3741	n:10000
Cons ci ratio: 4.324244e-02	ci left: 4.412128e-01	ci right 4.608157e-01	k: 4510	n:10000
KS ci ratio: 8.064764e-02	ci left: 1.833364e-01	ci right 1.988440e-01	k: 1910	n:10000
SASH1   10000 perm   2 sec   (4483 perm/sec)   p_kst 1.910000e-01   p_cons 4.510000e-01   p_joint 3.741000e-01

Outputting figure to mutsig2_images.part000000000152/SASH1.6_3824_10000_0.191_0.451_0.3741.png
                gene_name: SASH1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 28 percent done.
SCAPER
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.919576e-02	ci left: 7.987200e-01	ci right 8.143010e-01	k: 8066	n:10000
Cons ci ratio: 4.182125e-02	ci left: 4.577814e-01	ci right 4.774375e-01	k: 4676	n:10000
KS ci ratio: 1.594957e-02	ci left: 8.510045e-01	ci right 8.647863e-01	k: 8580	n:10000
SCAPER   10000 perm   2 sec   (4202 perm/sec)   p_kst 8.580000e-01   p_cons 4.676000e-01   p_joint 8.066000e-01

Outputting figure to mutsig2_images.part000000000152/SCAPER.6_4365_10000_0.858_0.4676_0.8066.png
                gene_name: SCAPER
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 30 percent done.
SALL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.213381e-01	ci left: 8.873809e-02	ci right 1.002994e-01	k: 944	n:10000
Cons ci ratio: 2.659928e-02	ci left: 6.754905e-01	ci right 6.938018e-01	k: 6847	n:10000
KS ci ratio: 3.805205e-01	ci left: 8.505237e-03	ci right 1.258745e-02	k: 104	n:10000
SALL3   10000 perm   2 sec   (4314 perm/sec)   p_kst 1.040000e-02   p_cons 6.847000e-01   p_joint 9.440000e-02

Joint ci ratio: 1.040601e-01	ci left: 6.279246e-02	ci right 6.973429e-02	k: 1324	n:20000
Cons ci ratio: 1.816502e-02	ci left: 6.931426e-01	ci right 7.058994e-01	k: 13991	n:20000
KS ci ratio: 2.690752e-01	ci left: 9.087199e-03	ci right 1.195778e-02	k: 209	n:20000
SALL3   20000 perm   5 sec   (3973 perm/sec)   p_kst 1.045000e-02   p_cons 6.995500e-01   p_joint 6.620000e-02

Joint ci ratio: 1.074662e-01	ci left: 4.018007e-02	ci right 4.477573e-02	k: 1273	n:30000
Cons ci ratio: 1.507390e-02	ci left: 6.874440e-01	ci right 6.979187e-01	k: 20781	n:30000
KS ci ratio: 2.145953e-01	ci left: 9.819042e-03	ci right 1.221040e-02	k: 329	n:30000
SALL3   30000 perm   8 sec   (3814 perm/sec)   p_kst 1.096667e-02   p_cons 6.927000e-01   p_joint 4.243333e-02

Joint ci ratio: 9.174184e-02	ci left: 4.164399e-02	ci right 4.567260e-02	k: 1745	n:40000
Cons ci ratio: 1.308895e-02	ci left: 6.870227e-01	ci right 6.960994e-01	k: 27663	n:40000
KS ci ratio: 1.845774e-01	ci left: 1.012024e-02	ci right 1.220164e-02	k: 445	n:40000
SALL3   40000 perm   11 sec   (3725 perm/sec)   p_kst 1.112500e-02   p_cons 6.915750e-01   p_joint 4.362500e-02

Joint ci ratio: 1.015117e-01	ci left: 2.748801e-02	ci right 3.044701e-02	k: 1447	n:50000
Cons ci ratio: 1.181470e-02	ci left: 6.835770e-01	ci right 6.917212e-01	k: 34383	n:50000
KS ci ratio: 1.657693e-01	ci left: 1.014260e-02	ci right 1.199482e-02	k: 552	n:50000
SALL3   50000 perm   14 sec   (3686 perm/sec)   p_kst 1.104000e-02   p_cons 6.876600e-01   p_joint 2.894000e-02

Joint ci ratio: 8.738491e-02	ci left: 3.103020e-02	ci right 3.388193e-02	k: 1946	n:60000
Cons ci ratio: 1.057516e-02	ci left: 6.923519e-01	ci right 6.997292e-01	k: 41763	n:60000
KS ci ratio: 1.451075e-01	ci left: 1.114408e-02	ci right 1.290359e-02	k: 720	n:60000
SALL3   60000 perm   17 sec   (3636 perm/sec)   p_kst 1.200000e-02   p_cons 6.960500e-01   p_joint 3.243333e-02

Joint ci ratio: 8.704380e-02	ci left: 2.693017e-02	ci right 2.939487e-02	k: 1970	n:70000
Cons ci ratio: 9.785260e-03	ci left: 6.928639e-01	ci right 6.996913e-01	k: 48740	n:70000
KS ci ratio: 1.343570e-01	ci left: 1.120652e-02	ci right 1.283431e-02	k: 840	n:70000
SALL3   70000 perm   19 sec   (3603 perm/sec)   p_kst 1.200000e-02   p_cons 6.962857e-01   p_joint 2.814286e-02

Joint ci ratio: 6.710265e-02	ci left: 3.953797e-02	ci right 4.229545e-02	k: 3272	n:80000
Cons ci ratio: 9.157301e-03	ci left: 6.928995e-01	ci right 6.992863e-01	k: 55688	n:80000
KS ci ratio: 1.248372e-01	ci left: 1.141443e-02	ci right 1.294625e-02	k: 973	n:80000
SALL3   80000 perm   22 sec   (3560 perm/sec)   p_kst 1.216250e-02   p_cons 6.961000e-01   p_joint 4.090000e-02

Joint ci ratio: 6.840847e-02	ci left: 3.399454e-02	ci right 3.641331e-02	k: 3167	n:90000
Cons ci ratio: 8.610474e-03	ci left: 6.942197e-01	ci right 7.002342e-01	k: 62751	n:90000
KS ci ratio: 1.217403e-01	ci left: 1.069511e-02	ci right 1.209221e-02	k: 1024	n:90000
SALL3   90000 perm   26 sec   (3513 perm/sec)   p_kst 1.137778e-02   p_cons 6.972333e-01   p_joint 3.518889e-02

Joint ci ratio: 6.802482e-02	ci left: 3.104561e-02	ci right 3.324164e-02	k: 3213	n:100000
Cons ci ratio: 8.167328e-03	ci left: 6.944418e-01	ci right 7.001467e-01	k: 69730	n:100000
KS ci ratio: 1.162120e-01	ci left: 1.059581e-02	ci right 1.191277e-02	k: 1124	n:100000
SALL3   100000 perm   29 sec   (3468 perm/sec)   p_kst 1.124000e-02   p_cons 6.973000e-01   p_joint 3.213000e-02

Joint ci ratio: 6.765190e-02	ci left: 2.861526e-02	ci right 3.062782e-02	k: 3257	n:110000
Cons ci ratio: 7.787581e-03	ci left: 6.945571e-01	ci right 6.999962e-01	k: 76701	n:110000
KS ci ratio: 1.107812e-01	ci left: 1.063068e-02	ci right 1.188619e-02	k: 1237	n:110000
SALL3   110000 perm   32 sec   (3420 perm/sec)   p_kst 1.124545e-02   p_cons 6.972818e-01   p_joint 2.960909e-02

Joint ci ratio: 6.839895e-02	ci left: 2.572964e-02	ci right 2.756000e-02	k: 3196	n:120000
Cons ci ratio: 7.461758e-03	ci left: 6.943492e-01	ci right 6.995579e-01	k: 83635	n:120000
KS ci ratio: 1.063259e-01	ci left: 1.060414e-02	ci right 1.180299e-02	k: 1343	n:120000
SALL3   120000 perm   36 sec   (3369 perm/sec)   p_kst 1.119167e-02   p_cons 6.969583e-01   p_joint 2.663333e-02

Joint ci ratio: 6.737700e-02	ci left: 2.452121e-02	ci right 2.623851e-02	k: 3298	n:130000
Cons ci ratio: 7.169757e-03	ci left: 6.944088e-01	ci right 6.994131e-01	k: 90599	n:130000
KS ci ratio: 1.021901e-01	ci left: 1.062002e-02	ci right 1.177117e-02	k: 1454	n:130000
SALL3   130000 perm   39 sec   (3320 perm/sec)   p_kst 1.118462e-02   p_cons 6.969154e-01   p_joint 2.536923e-02

Joint ci ratio: 7.062965e-02	ci left: 2.076764e-02	ci right 2.229513e-02	k: 3013	n:140000
Cons ci ratio: 6.913877e-03	ci left: 6.941985e-01	ci right 6.990219e-01	k: 97526	n:140000
KS ci ratio: 9.917692e-02	ci left: 1.048808e-02	ci right 1.158945e-02	k: 1544	n:140000
SALL3   140000 perm   43 sec   (3256 perm/sec)   p_kst 1.102857e-02   p_cons 6.966143e-01   p_joint 2.152143e-02

Outputting figure to mutsig2_images.part000000000152/SALL3.5_3915_140000_0.011029_0.69661_0.021521.png
                gene_name: SALL3
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.022 

Current progress: 32 percent done.
SALL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.899237e-02	ci left: 2.971738e-01	ci right 3.153392e-01	k: 3062	n:10000
Cons ci ratio: 3.777764e-02	ci left: 5.085527e-01	ci right 5.282366e-01	k: 5184	n:10000
KS ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
SALL4   10000 perm   2 sec   (4667 perm/sec)   p_kst 1.336000e-01   p_cons 5.184000e-01   p_joint 3.062000e-01

Outputting figure to mutsig2_images.part000000000152/SALL4.5_3178_10000_0.1336_0.5184_0.3062.png
                gene_name: SALL4
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 34 percent done.
SAMHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.207044e-01	ci left: 8.961344e-02	ci right 1.012235e-01	k: 953	n:10000
Cons ci ratio: 1.980390e-01	ci left: 3.395684e-02	ci right 4.151552e-02	k: 376	n:10000
KS ci ratio: 8.738921e-02	ci left: 1.601305e-01	ci right 1.748638e-01	k: 1674	n:10000
SAMHD1   10000 perm   2 sec   (5112 perm/sec)   p_kst 1.674000e-01   p_cons 3.760000e-02   p_joint 9.530000e-02

Joint ci ratio: 8.308492e-02	ci left: 9.597378e-02	ci right 1.043429e-01	k: 2002	n:20000
Cons ci ratio: 1.387992e-01	ci left: 3.568248e-02	ci right 4.105279e-02	k: 766	n:20000
KS ci ratio: 6.192770e-02	ci left: 1.617065e-01	ci right 1.720906e-01	k: 3337	n:20000
SAMHD1   20000 perm   4 sec   (4564 perm/sec)   p_kst 1.668500e-01   p_cons 3.830000e-02   p_joint 1.001000e-01

Joint ci ratio: 9.451003e-02	ci left: 5.166456e-02	ci right 5.682220e-02	k: 1626	n:30000
Cons ci ratio: 1.132021e-01	ci left: 3.625368e-02	ci right 4.063629e-02	k: 1152	n:30000
KS ci ratio: 4.996626e-02	ci left: 1.659628e-01	ci right 1.745011e-01	k: 5106	n:30000
SAMHD1   30000 perm   7 sec   (4365 perm/sec)   p_kst 1.702000e-01   p_cons 3.840000e-02   p_joint 5.420000e-02

Joint ci ratio: 6.974113e-02	ci left: 7.064145e-02	ci right 7.577072e-02	k: 2927	n:40000
Cons ci ratio: 9.479130e-02	ci left: 3.905325e-02	ci right 4.296375e-02	k: 1639	n:40000
KS ci ratio: 4.388059e-02	ci left: 1.626629e-01	ci right 1.699857e-01	k: 6652	n:40000
SAMHD1   40000 perm   9 sec   (4272 perm/sec)   p_kst 1.663000e-01   p_cons 4.097500e-02   p_joint 7.317500e-02

Outputting figure to mutsig2_images.part000000000152/SAMHD1.5_1945_40000_0.1663_0.040975_0.073175.png
                gene_name: SAMHD1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.076 

Current progress: 36 percent done.
SAAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.530898e-02	ci left: 4.182745e-01	ci right 4.377675e-01	k: 4280	n:10000
Cons ci ratio: 5.608365e-02	ci left: 3.188987e-01	ci right 3.374015e-01	k: 3281	n:10000
KS ci ratio: 4.278265e-02	ci left: 4.465016e-01	ci right 4.661239e-01	k: 4563	n:10000
SAAL1   10000 perm   2 sec   (5595 perm/sec)   p_kst 4.563000e-01   p_cons 3.281000e-01   p_joint 4.280000e-01

Outputting figure to mutsig2_images.part000000000152/SAAL1.4_1473_10000_0.4563_0.3281_0.428.png
                gene_name: SAAL1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 38 percent done.
SAMD14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.236267e-02	ci left: 4.513922e-01	ci right 4.710304e-01	k: 4612	n:10000
Cons ci ratio: 7.060744e-02	ci left: 2.272116e-01	ci right 2.439427e-01	k: 2355	n:10000
KS ci ratio: 1.624279e-02	ci left: 8.464166e-01	ci right 8.603769e-01	k: 8535	n:10000
SAMD14   10000 perm   2 sec   (5678 perm/sec)   p_kst 8.535000e-01   p_cons 2.355000e-01   p_joint 4.612000e-01

Outputting figure to mutsig2_images.part000000000152/SAMD14.4_1378_10000_0.8535_0.2355_0.4612.png
                gene_name: SAMD14
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 40 percent done.
SAT1
Processing conservation and coverage...
Processing mutations... 
Skipping 4 mutations outside exons of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 42 percent done.
SBSN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.141976e-02	ci left: 5.991544e-01	ci right 6.183822e-01	k: 6088	n:10000
Cons ci ratio: 3.780034e-02	ci left: 5.082525e-01	ci right 5.279369e-01	k: 5181	n:10000
KS ci ratio: 4.382332e-02	ci left: 4.346283e-01	ci right 4.542041e-01	k: 4444	n:10000
SBSN   10000 perm   2 sec   (5366 perm/sec)   p_kst 4.444000e-01   p_cons 5.181000e-01   p_joint 6.088000e-01

Outputting figure to mutsig2_images.part000000000152/SBSN.4_1789_10000_0.4444_0.5181_0.6088.png
                gene_name: SBSN
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 43 percent done.
SCAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.927536e-03	ci left: 9.662559e-01	ci right 9.730668e-01	k: 9698	n:10000
KS ci ratio: 6.868370e-03	ci left: 9.667828e-01	ci right 9.735397e-01	k: 9703	n:10000
SCAF1   10000 perm   2 sec   (4706 perm/sec)   p_kst 9.703000e-01   p_cons 9.698000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SCAF1.4_3979_10000_0.9703_0.9698_1.png
                gene_name: SCAF1
               theta_stop: 0.0069 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
S1PR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.875836e-02	ci left: 1.293382e-01	ci right 1.428746e-01	k: 1360	n:10000
Cons ci ratio: 6.621760e-02	ci left: 2.508304e-01	ci right 2.681099e-01	k: 2594	n:10000
KS ci ratio: 1.267434e-01	ci left: 8.174120e-02	ci right 9.290058e-02	k: 872	n:10000
S1PR3   10000 perm   2 sec   (6033 perm/sec)   p_kst 8.720000e-02   p_cons 2.594000e-01   p_joint 1.360000e-01

Joint ci ratio: 5.418618e-02	ci left: 2.017493e-01	ci right 2.130359e-01	k: 4147	n:20000
Cons ci ratio: 4.690258e-02	ci left: 2.527405e-01	ci right 2.649297e-01	k: 5176	n:20000
KS ci ratio: 9.249649e-02	ci left: 7.857610e-02	ci right 8.624582e-02	k: 1647	n:20000
S1PR3   20000 perm   4 sec   (5296 perm/sec)   p_kst 8.235000e-02   p_cons 2.588000e-01   p_joint 2.073500e-01

Outputting figure to mutsig2_images.part000000000152/S1PR3.3_1141_20000_0.08235_0.2588_0.20735.png
                gene_name: S1PR3
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 47 percent done.
SAA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.196764e-02	ci left: 9.091566e-01	ci right 9.202004e-01	k: 9148	n:10000
Cons ci ratio: 2.033904e-02	ci left: 7.797545e-01	ci right 7.958775e-01	k: 7879	n:10000
KS ci ratio: 1.938620e-02	ci left: 7.955742e-01	ci right 8.112487e-01	k: 8035	n:10000
SAA1   10000 perm   2 sec   (6551 perm/sec)   p_kst 8.035000e-01   p_cons 7.879000e-01   p_joint 9.148000e-01

Outputting figure to mutsig2_images.part000000000152/SAA1.3_381_10000_0.8035_0.7879_0.9148.png
                gene_name: SAA1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 49 percent done.
SAE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.677188e-02	ci left: 6.726697e-01	ci right 6.910243e-01	k: 6819	n:10000
Cons ci ratio: 5.359736e-02	ci left: 3.390568e-01	ci right 3.578316e-01	k: 3484	n:10000
KS ci ratio: 3.196322e-02	ci left: 5.909224e-01	ci right 6.102190e-01	k: 6006	n:10000
SAE1   10000 perm   2 sec   (6516 perm/sec)   p_kst 6.006000e-01   p_cons 3.484000e-01   p_joint 6.819000e-01

Outputting figure to mutsig2_images.part000000000152/SAE1.3_1151_10000_0.6006_0.3484_0.6819.png
                gene_name: SAE1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 51 percent done.
SAFB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.621153e-02	ci left: 5.296705e-01	ci right 5.493065e-01	k: 5395	n:10000
Cons ci ratio: 2.441419e-02	ci left: 7.115912e-01	ci right 7.292802e-01	k: 7205	n:10000
KS ci ratio: 5.180519e-02	ci left: 3.545604e-01	ci right 3.735189e-01	k: 3640	n:10000
SAFB   10000 perm   2 sec   (4861 perm/sec)   p_kst 3.640000e-01   p_cons 7.205000e-01   p_joint 5.395000e-01

Outputting figure to mutsig2_images.part000000000152/SAFB.3_2832_10000_0.364_0.7205_0.5395.png
                gene_name: SAFB
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 53 percent done.
SAMD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.350532e-02	ci left: 4.382197e-01	ci right 4.578106e-01	k: 4480	n:10000
Cons ci ratio: 3.529587e-02	ci left: 5.423897e-01	ci right 5.619799e-01	k: 5522	n:10000
KS ci ratio: 6.424362e-02	ci left: 2.625040e-01	ci right 2.800294e-01	k: 2712	n:10000
SAMD3   10000 perm   2 sec   (5514 perm/sec)   p_kst 2.712000e-01   p_cons 5.522000e-01   p_joint 4.480000e-01

Outputting figure to mutsig2_images.part000000000152/SAMD3.3_1619_10000_0.2712_0.5522_0.448.png
                gene_name: SAMD3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 55 percent done.
SAMSN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.311172e-02	ci left: 4.427095e-01	ci right 4.623181e-01	k: 4525	n:10000
KS ci ratio: 1.755337e-02	ci left: 8.255431e-01	ci right 8.402624e-01	k: 8330	n:10000
SAMSN1   10000 perm   2 sec   (5982 perm/sec)   p_kst 8.330000e-01   p_cons 4.525000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SAMSN1.3_1154_10000_0.833_0.4525_1.png
                gene_name: SAMSN1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
SATB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.649413e-03	ci left: 9.595321e-01	ci right 9.669949e-01	k: 9634	n:10000
Cons ci ratio: 3.913930e-02	ci left: 4.908512e-01	ci right 5.105484e-01	k: 5007	n:10000
KS ci ratio: 3.062084e-02	ci left: 6.114073e-01	ci right 6.305221e-01	k: 6210	n:10000
SATB2   10000 perm   2 sec   (4775 perm/sec)   p_kst 6.210000e-01   p_cons 5.007000e-01   p_joint 9.634000e-01

Outputting figure to mutsig2_images.part000000000152/SATB2.3_2242_10000_0.621_0.5007_0.9634.png
                gene_name: SATB2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 58 percent done.
SBF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.255266e-02	ci left: 5.820912e-01	ci right 6.014553e-01	k: 5918	n:10000
Cons ci ratio: 6.822271e-02	ci left: 2.396590e-01	ci right 2.566879e-01	k: 2481	n:10000
KS ci ratio: 1.435501e-02	ci left: 8.753109e-01	ci right 8.880658e-01	k: 8818	n:10000
SBF1   10000 perm   3 sec   (3760 perm/sec)   p_kst 8.818000e-01   p_cons 2.481000e-01   p_joint 5.918000e-01

Outputting figure to mutsig2_images.part000000000152/SBF1.3_5846_10000_0.8818_0.2481_0.5918.png
                gene_name: SBF1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 60 percent done.
SC5DL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.304220e-02	ci left: 4.435078e-01	ci right 4.631194e-01	k: 4533	n:10000
Cons ci ratio: 9.888455e-02	ci left: 1.290445e-01	ci right 1.425684e-01	k: 1357	n:10000
KS ci ratio: 2.475385e-02	ci left: 7.059398e-01	ci right 7.237349e-01	k: 7149	n:10000
SC5DL   10000 perm   2 sec   (5962 perm/sec)   p_kst 7.149000e-01   p_cons 1.357000e-01   p_joint 4.533000e-01

Outputting figure to mutsig2_images.part000000000152/SC5DL.3_916_10000_0.7149_0.1357_0.4533.png
                gene_name: SC5DL
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 62 percent done.
SCAI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.678445e-02	ci left: 8.378583e-01	ci right 8.521401e-01	k: 8451	n:10000
Cons ci ratio: 5.554127e-02	ci left: 3.231670e-01	ci right 3.417307e-01	k: 3324	n:10000
KS ci ratio: 2.063679e-02	ci left: 7.747892e-01	ci right 7.910457e-01	k: 7830	n:10000
SCAI   10000 perm   2 sec   (5937 perm/sec)   p_kst 7.830000e-01   p_cons 3.324000e-01   p_joint 8.451000e-01

Outputting figure to mutsig2_images.part000000000152/SCAI.3_1966_10000_0.783_0.3324_0.8451.png
                gene_name: SCAI
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 64 percent done.
S100PBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.368595e-02	ci left: 8.851375e-01	ci right 8.974335e-01	k: 8914	n:10000
Cons ci ratio: 3.433571e-02	ci left: 5.560174e-01	ci right 5.755442e-01	k: 5658	n:10000
KS ci ratio: 1.757229e-02	ci left: 8.252379e-01	ci right 8.399678e-01	k: 8327	n:10000
S100PBP   10000 perm   2 sec   (5948 perm/sec)   p_kst 8.327000e-01   p_cons 5.658000e-01   p_joint 8.914000e-01

Outputting figure to mutsig2_images.part000000000152/S100PBP.2_1256_10000_0.8327_0.5658_0.8914.png
                gene_name: S100PBP
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 66 percent done.
SAA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.127486e-02	ci left: 6.013635e-01	ci right 6.205718e-01	k: 6110	n:10000
KS ci ratio: 4.720332e-03	ci left: 9.832843e-01	ci right 9.880266e-01	k: 9858	n:10000
SAA4   10000 perm   1 sec   (6707 perm/sec)   p_kst 9.858000e-01   p_cons 6.110000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SAA4.2_405_10000_0.9858_0.611_1.png
                gene_name: SAA4
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
SAMD11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.134967e-02	ci left: 1.483504e-01	ci right 1.626509e-01	k: 1554	n:10000
Cons ci ratio: 3.202320e-02	ci left: 5.900191e-01	ci right 6.093228e-01	k: 5997	n:10000
KS ci ratio: 3.155130e-01	ci left: 1.280183e-02	ci right 1.768651e-02	k: 151	n:10000
SAMD11   10000 perm   2 sec   (5592 perm/sec)   p_kst 1.510000e-02   p_cons 5.997000e-01   p_joint 1.554000e-01

Joint ci ratio: 4.815084e-02	ci left: 2.428699e-01	ci right 2.549032e-01	k: 4977	n:20000
Cons ci ratio: 2.296475e-02	ci left: 5.861032e-01	ci right 5.997698e-01	k: 11859	n:20000
KS ci ratio: 2.184120e-01	ci left: 1.411743e-02	ci right 1.762537e-02	k: 316	n:20000
SAMD11   20000 perm   4 sec   (4937 perm/sec)   p_kst 1.580000e-02   p_cons 5.929500e-01   p_joint 2.488500e-01

Joint ci ratio: 5.604608e-02	ci left: 1.362566e-01	ci right 1.441466e-01	k: 4205	n:30000
Cons ci ratio: 1.864565e-02	ci left: 5.900876e-01	ci right 6.012272e-01	k: 17870	n:30000
KS ci ratio: 1.788124e-01	ci left: 1.435554e-02	ci right 1.720602e-02	k: 472	n:30000
SAMD11   30000 perm   6 sec   (4665 perm/sec)   p_kst 1.573333e-02   p_cons 5.956667e-01   p_joint 1.401667e-01

Joint ci ratio: 4.441825e-02	ci left: 1.593428e-01	ci right 1.666062e-01	k: 6518	n:40000
Cons ci ratio: 1.607300e-02	ci left: 5.930755e-01	ci right 6.027103e-01	k: 23916	n:40000
KS ci ratio: 1.537051e-01	ci left: 1.476904e-02	ci right 1.725194e-02	k: 639	n:40000
SAMD11   40000 perm   9 sec   (4404 perm/sec)   p_kst 1.597500e-02   p_cons 5.979000e-01   p_joint 1.629500e-01

Joint ci ratio: 4.326626e-02	ci left: 1.379604e-01	ci right 1.440813e-01	k: 7050	n:50000
Cons ci ratio: 1.440912e-02	ci left: 5.924848e-01	ci right 6.011040e-01	k: 29840	n:50000
KS ci ratio: 1.361866e-01	ci left: 1.518891e-02	ci right 1.742776e-02	k: 814	n:50000
SAMD11   50000 perm   12 sec   (4297 perm/sec)   p_kst 1.628000e-02   p_cons 5.968000e-01   p_joint 1.410000e-01

Joint ci ratio: 3.562205e-02	ci left: 1.649335e-01	ci right 1.709319e-01	k: 10075	n:60000
Cons ci ratio: 1.316510e-02	ci left: 5.924447e-01	ci right 6.003127e-01	k: 35783	n:60000
KS ci ratio: 1.246453e-01	ci left: 1.520497e-02	ci right 1.724221e-02	k: 972	n:60000
SAMD11   60000 perm   14 sec   (4226 perm/sec)   p_kst 1.620000e-02   p_cons 5.963833e-01   p_joint 1.679167e-01

Joint ci ratio: 3.308001e-02	ci left: 1.643147e-01	ci right 1.698558e-01	k: 11695	n:70000
Cons ci ratio: 1.219717e-02	ci left: 5.923968e-01	ci right 5.996810e-01	k: 41723	n:70000
KS ci ratio: 1.153562e-01	ci left: 1.529162e-02	ci right 1.717736e-02	k: 1135	n:70000
SAMD11   70000 perm   17 sec   (4168 perm/sec)   p_kst 1.621429e-02   p_cons 5.960429e-01   p_joint 1.670714e-01

Joint ci ratio: 3.487662e-02	ci left: 1.339914e-01	ci right 1.387600e-01	k: 10909	n:80000
Cons ci ratio: 1.140452e-02	ci left: 5.928404e-01	ci right 5.996527e-01	k: 47700	n:80000
KS ci ratio: 1.091206e-01	ci left: 1.500804e-02	ci right 1.675232e-02	k: 1269	n:80000
SAMD11   80000 perm   20 sec   (4089 perm/sec)   p_kst 1.586250e-02   p_cons 5.962500e-01   p_joint 1.363625e-01

Joint ci ratio: 3.371661e-02	ci left: 1.283718e-01	ci right 1.327853e-01	k: 11751	n:90000
Cons ci ratio: 1.074573e-02	ci left: 5.933307e-01	ci right 5.997520e-01	k: 53689	n:90000
KS ci ratio: 1.028708e-01	ci left: 1.506035e-02	ci right 1.670440e-02	k: 1428	n:90000
SAMD11   90000 perm   22 sec   (4025 perm/sec)   p_kst 1.586667e-02   p_cons 5.965444e-01   p_joint 1.305667e-01

Joint ci ratio: 3.256071e-02	ci left: 1.245250e-01	ci right 1.286567e-01	k: 12658	n:100000
Cons ci ratio: 1.020563e-02	ci left: 5.929609e-01	ci right 5.990535e-01	k: 59601	n:100000
KS ci ratio: 9.777279e-02	ci left: 1.504594e-02	ci right 1.660233e-02	k: 1581	n:100000
SAMD11   100000 perm   25 sec   (3967 perm/sec)   p_kst 1.581000e-02   p_cons 5.960100e-01   p_joint 1.265800e-01

Outputting figure to mutsig2_images.part000000000152/SAMD11.2_2098_100000_0.01581_0.59601_0.12658.png
                gene_name: SAMD11
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 70 percent done.
SAMD12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.123541e-02	ci left: 6.019660e-01	ci right 6.211689e-01	k: 6116	n:10000
Cons ci ratio: 3.031594e-02	ci left: 6.161294e-01	ci right 6.351973e-01	k: 6257	n:10000
KS ci ratio: 4.631317e-02	ci left: 4.076104e-01	ci right 4.270378e-01	k: 4173	n:10000
SAMD12   10000 perm   2 sec   (6456 perm/sec)   p_kst 4.173000e-01   p_cons 6.257000e-01   p_joint 6.116000e-01

Outputting figure to mutsig2_images.part000000000152/SAMD12.2_649_10000_0.4173_0.6257_0.6116.png
                gene_name: SAMD12
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 72 percent done.
SAMD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.930400e-02	ci left: 4.887518e-01	ci right 5.084490e-01	k: 4986	n:10000
Cons ci ratio: 3.798239e-02	ci left: 5.058516e-01	ci right 5.255392e-01	k: 5157	n:10000
KS ci ratio: 7.501285e-02	ci left: 2.063903e-01	ci right 2.225764e-01	k: 2144	n:10000
SAMD7   10000 perm   2 sec   (6293 perm/sec)   p_kst 2.144000e-01   p_cons 5.157000e-01   p_joint 4.986000e-01

Outputting figure to mutsig2_images.part000000000152/SAMD7.2_1369_10000_0.2144_0.5157_0.4986.png
                gene_name: SAMD7
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 74 percent done.
SAMM50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.310950e-02	ci left: 2.695318e-01	ci right 2.871975e-01	k: 2783	n:10000
KS ci ratio: 1.283710e-02	ci left: 8.972367e-01	ci right 9.089273e-01	k: 9032	n:10000
SAMM50   10000 perm   2 sec   (5973 perm/sec)   p_kst 9.032000e-01   p_cons 2.783000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SAMM50.2_1470_10000_0.9032_0.2783_1.png
                gene_name: SAMM50
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
SAP30BP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.767943e-02	ci left: 5.098532e-01	ci right 5.295353e-01	k: 5197	n:10000
KS ci ratio: 1.904187e-02	ci left: 8.012576e-01	ci right 8.167620e-01	k: 8091	n:10000
SAP30BP   10000 perm   2 sec   (6267 perm/sec)   p_kst 8.091000e-01   p_cons 5.197000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SAP30BP.2_971_10000_0.8091_0.5197_1.png
                gene_name: SAP30BP
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
SARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.576124e-03	ci left: 9.501268e-01	ci right 9.584059e-01	k: 9544	n:10000
Cons ci ratio: 6.033790e-02	ci left: 2.877571e-01	ci right 3.057615e-01	k: 2967	n:10000
KS ci ratio: 4.130420e-02	ci left: 4.639725e-01	ci right 4.836428e-01	k: 4738	n:10000
SARS   10000 perm   2 sec   (5645 perm/sec)   p_kst 4.738000e-01   p_cons 2.967000e-01   p_joint 9.544000e-01

Outputting figure to mutsig2_images.part000000000152/SARS.2_1589_10000_0.4738_0.2967_0.9544.png
                gene_name: SARS
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 79 percent done.
SARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.422642e-02	ci left: 7.147204e-01	ci right 7.323492e-01	k: 7236	n:10000
Cons ci ratio: 5.251744e-02	ci left: 3.482980e-01	ci right 3.671849e-01	k: 3577	n:10000
KS ci ratio: 1.806180e-02	ci left: 8.173068e-01	ci right 8.323035e-01	k: 8249	n:10000
SARS2   10000 perm   2 sec   (5680 perm/sec)   p_kst 8.249000e-01   p_cons 3.577000e-01   p_joint 7.236000e-01

Outputting figure to mutsig2_images.part000000000152/SARS2.2_1702_10000_0.8249_0.3577_0.7236.png
                gene_name: SARS2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 81 percent done.
SART3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.459607e-02	ci left: 7.085635e-01	ci right 7.263097e-01	k: 7175	n:10000
KS ci ratio: 6.898055e-02	ci left: 2.356076e-01	ci right 2.525417e-01	k: 2440	n:10000
SART3   10000 perm   2 sec   (5275 perm/sec)   p_kst 2.440000e-01   p_cons 7.175000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SART3.2_2968_10000_0.244_0.7175_1.png
                gene_name: SART3
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
SASS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.732256e-02	ci left: 6.637061e-01	ci right 6.821931e-01	k: 6730	n:10000
Cons ci ratio: 5.363278e-02	ci left: 3.387587e-01	ci right 3.575298e-01	k: 3481	n:10000
KS ci ratio: 1.334449e-02	ci left: 8.900563e-01	ci right 9.021119e-01	k: 8962	n:10000
SASS6   10000 perm   2 sec   (5858 perm/sec)   p_kst 8.962000e-01   p_cons 3.481000e-01   p_joint 6.730000e-01

Outputting figure to mutsig2_images.part000000000152/SASS6.2_2042_10000_0.8962_0.3481_0.673.png
                gene_name: SASS6
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 85 percent done.
SAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.459607e-02	ci left: 7.085635e-01	ci right 7.263097e-01	k: 7175	n:10000
Cons ci ratio: 7.150104e-02	ci left: 2.227686e-01	ci right 2.393884e-01	k: 2310	n:10000
KS ci ratio: 4.407262e-02	ci left: 4.318355e-01	ci right 4.513986e-01	k: 4416	n:10000
SAT2   10000 perm   1 sec   (6869 perm/sec)   p_kst 4.416000e-01   p_cons 2.310000e-01   p_joint 7.175000e-01

Outputting figure to mutsig2_images.part000000000152/SAT2.2_537_10000_0.4416_0.231_0.7175.png
                gene_name: SAT2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 87 percent done.
SATB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.629176e-02	ci left: 5.285691e-01	ci right 5.482085e-01	k: 5384	n:10000
KS ci ratio: 6.707253e-02	ci left: 2.459853e-01	ci right 2.631579e-01	k: 2545	n:10000
SATB1   10000 perm   2 sec   (5492 perm/sec)   p_kst 2.545000e-01   p_cons 5.384000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SATB1.2_2332_10000_0.2545_0.5384_1.png
                gene_name: SATB1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
SATL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.006440e-02	ci left: 2.896400e-01	ci right 3.076774e-01	k: 2986	n:10000
Cons ci ratio: 4.642761e-02	ci left: 4.064147e-01	ci right 4.258341e-01	k: 4161	n:10000
KS ci ratio: 6.958397e-02	ci left: 2.324462e-01	ci right 2.493050e-01	k: 2408	n:10000
SATL1   10000 perm   2 sec   (5701 perm/sec)   p_kst 2.408000e-01   p_cons 4.161000e-01   p_joint 2.986000e-01

Outputting figure to mutsig2_images.part000000000152/SATL1.2_1919_10000_0.2408_0.4161_0.2986.png
                gene_name: SATL1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 91 percent done.
SBK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.928483e-02	ci left: 1.543368e-01	ci right 1.688609e-01	k: 1615	n:10000
Cons ci ratio: 1.562625e-01	ci left: 5.455711e-02	ci right 6.390171e-02	k: 591	n:10000
KS ci ratio: 8.033598e-02	ci left: 1.845176e-01	ci right 2.000620e-01	k: 1922	n:10000
SBK1   10000 perm   2 sec   (6083 perm/sec)   p_kst 1.922000e-01   p_cons 5.910000e-02   p_joint 1.615000e-01

Joint ci ratio: 6.117036e-02	ci left: 1.651136e-01	ci right 1.755824e-01	k: 3406	n:20000
Cons ci ratio: 1.105463e-01	ci left: 5.587115e-02	ci right 6.245774e-02	k: 1182	n:20000
KS ci ratio: 5.672470e-02	ci left: 1.872537e-01	ci right 1.982358e-01	k: 3854	n:20000
SBK1   20000 perm   4 sec   (5273 perm/sec)   p_kst 1.927000e-01   p_cons 5.910000e-02   p_joint 1.703000e-01

Joint ci ratio: 8.755303e-02	ci left: 5.988461e-02	ci right 6.540046e-02	k: 1878	n:30000
Cons ci ratio: 9.162750e-02	ci left: 5.485939e-02	ci right 6.016004e-02	k: 1724	n:30000
KS ci ratio: 4.613052e-02	ci left: 1.895055e-01	ci right 1.984872e-01	k: 5819	n:30000
SBK1   30000 perm   6 sec   (5100 perm/sec)   p_kst 1.939667e-01   p_cons 5.746667e-02   p_joint 6.260000e-02

Outputting figure to mutsig2_images.part000000000152/SBK1.2_1287_30000_0.19397_0.057467_0.0626.png
                gene_name: SBK1
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.055 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.065 

Current progress: 92 percent done.
SCAMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.990708e-02	ci left: 2.907303e-01	ci right 3.087865e-01	k: 2997	n:10000
KS ci ratio: 2.400250e-02	ci left: 7.184560e-01	ci right 7.360115e-01	k: 7273	n:10000
SCAMP1   10000 perm   2 sec   (6411 perm/sec)   p_kst 7.273000e-01   p_cons 2.997000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SCAMP1.2_1052_10000_0.7273_0.2997_1.png
                gene_name: SCAMP1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
SCAMP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.367563e-03	ci left: 9.523170e-01	ci right 9.604144e-01	k: 9565	n:10000
KS ci ratio: 2.107331e-02	ci left: 7.674962e-01	ci right 7.839429e-01	k: 7758	n:10000
SCAMP5   10000 perm   2 sec   (6620 perm/sec)   p_kst 7.758000e-01   p_cons 9.565000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SCAMP5.2_732_10000_0.7758_0.9565_1.png
                gene_name: SCAMP5
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
SCAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.243266e-02	ci left: 7.447278e-01	ci right 7.617245e-01	k: 7533	n:10000
KS ci ratio: 3.400154e-02	ci left: 5.608290e-01	ci right 5.803299e-01	k: 5706	n:10000
SCAP   10000 perm   2 sec   (4740 perm/sec)   p_kst 5.706000e-01   p_cons 7.533000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000152/SCAP.2_3928_10000_0.5706_0.7533_1.png
                gene_name: SCAP
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
SCARA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.154516e-02	ci left: 4.610765e-01	ci right 4.807405e-01	k: 4709	n:10000
Cons ci ratio: 6.689629e-02	ci left: 2.469740e-01	ci right 2.641687e-01	k: 2555	n:10000
KS ci ratio: 2.372437e-02	ci left: 7.231012e-01	ci right 7.405635e-01	k: 7319	n:10000
SCARA3   10000 perm   2 sec   (5875 perm/sec)   p_kst 7.319000e-01   p_cons 2.555000e-01   p_joint 4.709000e-01

Outputting figure to mutsig2_images.part000000000152/SCARA3.2_1881_10000_0.7319_0.2555_0.4709.png
                gene_name: SCARA3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000152
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 152 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9894123: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000153> was used as the working directory.
Started at Sat Oct  6 00:27:52 2012
Results reported at Sat Oct  6 00:44:25 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000153.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000153.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 153  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000153.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    990.01 sec.
    Max Memory :      3571 MB
    Max Swap   :      5923 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
153
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 153
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 153: processing genes 13704 - 13793
Calculating significance of each gene.
Using projection method.
In gene SCARA5 the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 1213    n = 1	mu =   4.60e-07
13704	SCARA5	1.383342e-02
13705	SCARB1	9.686816e-01
13706	SCARB2	1.092750e-01
13707	SCARF1	1
13708	SCARF2	8.904987e-01
13709	SCCPDH	1
13710	SCD	4.174237e-01
13711	SCD5	2.821124e-01
13712	SCEL	1.908699e-01
13713	SCFD1	1.314320e-01
13714	SCFD2	4.020178e-01
13715	SCG2	3.489781e-01
13716	SCG3	5.251572e-01
13717	SCG5	1
13718	SCGB1A1	1
13719	SCGB1C1	1
13720	SCGB1D1	1.040398e-01
13721	SCGB1D2	1
13722	SCGB1D4	1
13723	SCGB2A1	1.884576e-01
13724	SCGB2A2	1
13725	SCGB3A1	1.905810e-01
13726	SCGB3A2	1
13727	SCGBL	3.154782e-01
13728	SCGN	2.086364e-01
13729	SCHIP1	1.254295e-01
13730	SCIN	3.164080e-01
13731	SCLT1	1.339891e-01
13732	SCLY	8.483050e-01
13733	SCMH1	7.317854e-01
13734	SCML1	4.322052e-01
In gene SCML2 the following bins exceed PROBCAP:
    READ-AG-A01L	categ 6	N = 2159    n = 1	mu =   3.23e-07
13735	SCML2	3.681294e-02
13736	SCML4	1.702137e-03
In gene SCN10A the following bins exceed PROBCAP:
    COAD-AA-A00K	categ 6	N = 5979    n = 1	mu =   5.86e-07
13737	SCN10A	1.906607e-02
13738	SCN11A	1.165605e-03
13739	SCN1A	1.061925e-02
13740	SCN1B	5.453976e-01
13741	SCN2A	1.149986e-02
13742	SCN2B	1.047627e-01
13743	SCN3A	1.368117e-01
13744	SCN3B	3.243917e-01
13745	SCN4A	3.615358e-01
13746	SCN4B	6.997012e-01
13747	SCN5A	4.346926e-01
13748	SCN7A	1.905717e-03
13749	SCN8A	9.211800e-01
13750	SCN9A	1.569639e-02
13751	SCNM1	4.981801e-01
13752	SCNN1A	5.991688e-01
13753	SCNN1B	4.677677e-01
13754	SCNN1D	1
13755	SCNN1G	2.061128e-01
13756	SCO1	5.199001e-01
13757	SCO2	1
13758	SCOC	1.959557e-01
13759	SCP2	3.040690e-01
13760	SCPEP1	2.084485e-01
13761	SCRG1	1
13762	SCRIB	9.830337e-01
13763	SCRN1	1
13764	SCRN2	5.906960e-01
13765	SCRN3	6.689863e-01
13766	SCRT2	1
13767	SCTR	4.472362e-01
13768	SCUBE1	8.718921e-01
13769	SCUBE2	5.092951e-02
13770	SCUBE3	1.452207e-01
In gene SCYL1 the following bins exceed PROBCAP:
    COAD-AA-A017	categ 6	N = 2211    n = 1	mu =   2.63e-07
13771	SCYL1	7.110585e-01
13772	SCYL2	5.662387e-01
13773	SCYL3	3.024893e-01
13774	SDAD1	9.353011e-01
13775	SDC1	8.544405e-01
13776	SDC2	9.737231e-02
13777	SDC3	5.290251e-01
13778	SDC4	4.721396e-01
13779	SDCBP	6.696037e-01
13780	SDCBP2	5.888590e-01
13781	SDCCAG1	4.263566e-01
In gene SDCCAG3 the following bins exceed PROBCAP:
    COAD-AA-3854	categ 6	N = 1260    n = 1	mu =   2.96e-07
13782	SDCCAG3	6.879134e-01
13783	SDCCAG8	1
13784	SDF2	2.011361e-01
13785	SDF2L1	1
13786	SDF4	1
13787	SDHA	2.893065e-01
13788	SDHAF2	2.865989e-01
13789	SDHB	4.553647e-01
13790	SDHC	1
13791	SDHD	5.790471e-01
13792	SDK1	2.818021e-05
13793	SDK2	3.694463e-01
Done

Running MutSig 2:
Scatter job 153: processing genes 13704 - 13793
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SDK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.683071e-01	ci left: 9.139894e-03	ci right 1.335208e-02	k: 111	n:10000
Cons ci ratio: 6.859028e-02	ci left: 2.376826e-01	ci right 2.546655e-01	k: 2461	n:10000
KS ci ratio: 8.756181e-01	ci left: 1.144300e-03	ci right 2.965502e-03	k: 19	n:10000
SDK1   10000 perm   2 sec   (4142 perm/sec)   p_kst 1.900000e-03   p_cons 2.461000e-01   p_joint 1.110000e-02

Joint ci ratio: 3.929888e-01	ci left: 3.979794e-03	ci right 5.968329e-03	k: 98	n:20000
Cons ci ratio: 4.865839e-02	ci left: 2.390022e-01	ci right 2.509720e-01	k: 4899	n:20000
KS ci ratio: 6.270744e-01	ci left: 1.344893e-03	ci right 2.606975e-03	k: 38	n:20000
SDK1   20000 perm   7 sec   (2858 perm/sec)   p_kst 1.900000e-03   p_cons 2.449500e-01   p_joint 4.900000e-03

Joint ci ratio: 4.322924e-01	ci left: 2.144750e-03	ci right 3.354753e-03	k: 81	n:30000
Cons ci ratio: 3.972952e-02	ci left: 2.401083e-01	ci right 2.498745e-01	k: 7349	n:30000
KS ci ratio: 5.329553e-01	ci left: 1.323626e-03	ci right 2.310215e-03	k: 53	n:30000
SDK1   30000 perm   10 sec   (3036 perm/sec)   p_kst 1.766667e-03   p_cons 2.449667e-01   p_joint 2.700000e-03

Joint ci ratio: 4.017006e-01	ci left: 1.899444e-03	ci right 2.875048e-03	k: 94	n:40000
Cons ci ratio: 3.436734e-02	ci left: 2.411890e-01	ci right 2.496480e-01	k: 9816	n:40000
KS ci ratio: 4.462897e-01	ci left: 1.497267e-03	ci right 2.377565e-03	k: 76	n:40000
SDK1   40000 perm   13 sec   (3066 perm/sec)   p_kst 1.900000e-03   p_cons 2.454000e-01   p_joint 2.350000e-03

Joint ci ratio: 2.424728e-01	ci left: 4.569652e-03	ci right 5.848830e-03	k: 259	n:50000
Cons ci ratio: 3.082275e-02	ci left: 2.406382e-01	ci right 2.481915e-01	k: 12220	n:50000
KS ci ratio: 4.083080e-01	ci left: 1.465596e-03	ci right 2.234093e-03	k: 91	n:50000
SDK1   50000 perm   16 sec   (3113 perm/sec)   p_kst 1.820000e-03   p_cons 2.444000e-01   p_joint 5.180000e-03

Joint ci ratio: 1.840948e-01	ci left: 6.809320e-03	ci right 8.205619e-03	k: 449	n:60000
Cons ci ratio: 2.814381e-02	ci left: 2.408827e-01	ci right 2.477754e-01	k: 14659	n:60000
KS ci ratio: 3.560012e-01	ci left: 1.658468e-03	ci right 2.391041e-03	k: 120	n:60000
SDK1   60000 perm   19 sec   (3140 perm/sec)   p_kst 2.000000e-03   p_cons 2.443167e-01   p_joint 7.483333e-03

Joint ci ratio: 1.722666e-01	ci left: 6.710072e-03	ci right 7.988419e-03	k: 513	n:70000
Cons ci ratio: 2.603732e-02	ci left: 2.414050e-01	ci right 2.477877e-01	k: 17121	n:70000
KS ci ratio: 3.395816e-01	ci left: 1.577993e-03	ci right 2.235825e-03	k: 132	n:70000
SDK1   70000 perm   22 sec   (3144 perm/sec)   p_kst 1.885714e-03   p_cons 2.445857e-01   p_joint 7.328571e-03

Joint ci ratio: 1.744073e-01	ci left: 5.727562e-03	ci right 6.833701e-03	k: 501	n:80000
Cons ci ratio: 2.436393e-02	ci left: 2.414875e-01	ci right 2.474561e-01	k: 19557	n:80000
KS ci ratio: 3.135431e-01	ci left: 1.644720e-03	ci right 2.267287e-03	k: 155	n:80000
SDK1   80000 perm   26 sec   (3137 perm/sec)   p_kst 1.937500e-03   p_cons 2.444625e-01   p_joint 6.262500e-03

Joint ci ratio: 1.666369e-01	ci left: 5.601714e-03	ci right 6.630510e-03	k: 549	n:90000
Cons ci ratio: 2.295932e-02	ci left: 2.418387e-01	ci right 2.474667e-01	k: 22018	n:90000
KS ci ratio: 2.977439e-01	ci left: 1.636384e-03	ci right 2.218692e-03	k: 172	n:90000
SDK1   90000 perm   29 sec   (3123 perm/sec)   p_kst 1.911111e-03   p_cons 2.446444e-01   p_joint 6.100000e-03

Joint ci ratio: 1.683899e-01	ci left: 4.936009e-03	ci right 5.853038e-03	k: 538	n:100000
Cons ci ratio: 2.175261e-02	ci left: 2.424663e-01	ci right 2.478085e-01	k: 24513	n:100000
KS ci ratio: 2.833688e-01	ci left: 1.639636e-03	ci right 2.189898e-03	k: 190	n:100000
SDK1   100000 perm   32 sec   (3108 perm/sec)   p_kst 1.900000e-03   p_cons 2.451300e-01   p_joint 5.380000e-03

Joint ci ratio: 1.719950e-01	ci left: 4.295675e-03	ci right 5.112594e-03	k: 516	n:110000
Cons ci ratio: 2.077777e-02	ci left: 2.419261e-01	ci right 2.470146e-01	k: 26891	n:110000
KS ci ratio: 2.677037e-01	ci left: 1.685239e-03	ci right 2.214300e-03	k: 213	n:110000
SDK1   110000 perm   36 sec   (3089 perm/sec)   p_kst 1.936364e-03   p_cons 2.444636e-01   p_joint 4.690909e-03

Joint ci ratio: 1.800767e-01	ci left: 3.579095e-03	ci right 4.295206e-03	k: 471	n:120000
Cons ci ratio: 1.991149e-02	ci left: 2.416966e-01	ci right 2.465658e-01	k: 29295	n:120000
KS ci ratio: 2.593605e-01	ci left: 1.653760e-03	ci right 2.154136e-03	k: 227	n:120000
SDK1   120000 perm   39 sec   (3067 perm/sec)   p_kst 1.891667e-03   p_cons 2.441250e-01   p_joint 3.925000e-03

Joint ci ratio: 1.844698e-01	ci left: 3.142203e-03	ci right 3.787950e-03	k: 449	n:130000
Cons ci ratio: 1.914485e-02	ci left: 2.415138e-01	ci right 2.461899e-01	k: 31700	n:130000
KS ci ratio: 2.502026e-01	ci left: 1.648968e-03	ci right 2.127534e-03	k: 244	n:130000
SDK1   130000 perm   43 sec   (3043 perm/sec)   p_kst 1.876923e-03   p_cons 2.438462e-01   p_joint 3.453846e-03

Joint ci ratio: 1.773223e-01	ci left: 3.170086e-03	ci right 3.793615e-03	k: 486	n:140000
Cons ci ratio: 1.843756e-02	ci left: 2.418161e-01	ci right 2.463231e-01	k: 34169	n:140000
KS ci ratio: 2.374531e-01	ci left: 1.712273e-03	ci right 2.180169e-03	k: 271	n:140000
SDK1   140000 perm   46 sec   (3017 perm/sec)   p_kst 1.935714e-03   p_cons 2.440643e-01   p_joint 3.471429e-03

Joint ci ratio: 1.775259e-01	ci left: 2.952346e-03	ci right 3.533784e-03	k: 485	n:150000
Cons ci ratio: 1.782645e-02	ci left: 2.416022e-01	ci right 2.459544e-01	k: 36566	n:150000
KS ci ratio: 2.283941e-01	ci left: 1.736235e-03	ci right 2.190029e-03	k: 293	n:150000
SDK1   150000 perm   50 sec   (2985 perm/sec)   p_kst 1.953333e-03   p_cons 2.437733e-01   p_joint 3.233333e-03

Joint ci ratio: 1.809363e-01	ci left: 2.660335e-03	ci right 3.195429e-03	k: 467	n:160000
Cons ci ratio: 1.726063e-02	ci left: 2.416665e-01	ci right 2.458803e-01	k: 39003	n:160000
KS ci ratio: 2.242438e-01	ci left: 1.692568e-03	ci right 2.125800e-03	k: 304	n:160000
SDK1   160000 perm   54 sec   (2961 perm/sec)   p_kst 1.900000e-03   p_cons 2.437688e-01   p_joint 2.918750e-03

Joint ci ratio: 1.896860e-01	ci left: 2.268196e-03	ci right 2.749021e-03	k: 425	n:170000
Cons ci ratio: 1.674280e-02	ci left: 2.417838e-01	ci right 2.458720e-01	k: 41450	n:170000
KS ci ratio: 2.203115e-01	ci left: 1.654105e-03	ci right 2.069060e-03	k: 315	n:170000
SDK1   170000 perm   58 sec   (2939 perm/sec)   p_kst 1.852941e-03   p_cons 2.438235e-01   p_joint 2.500000e-03

Joint ci ratio: 1.532403e-01	ci left: 3.344591e-03	ci right 3.904917e-03	k: 651	n:180000
Cons ci ratio: 1.702581e-02	ci left: 2.255594e-01	ci right 2.294382e-01	k: 40949	n:180000
KS ci ratio: 2.152639e-01	ci left: 1.640997e-03	ci right 2.041986e-03	k: 330	n:180000
SDK1   180000 perm   62 sec   (2915 perm/sec)   p_kst 1.833333e-03   p_cons 2.274944e-01   p_joint 3.616667e-03

Joint ci ratio: 1.249602e-01	ci left: 4.830538e-03	ci right 5.479438e-03	k: 978	n:190000
Cons ci ratio: 1.659930e-02	ci left: 2.250288e-01	ci right 2.288006e-01	k: 43113	n:190000
KS ci ratio: 2.096394e-01	ci left: 1.644326e-03	ci right 2.034282e-03	k: 348	n:190000
SDK1   190000 perm   66 sec   (2887 perm/sec)   p_kst 1.831579e-03   p_cons 2.269105e-01   p_joint 5.147368e-03

Joint ci ratio: 1.215313e-01	ci left: 4.860383e-03	ci right 5.494089e-03	k: 1034	n:200000
Cons ci ratio: 1.616683e-02	ci left: 2.253401e-01	ci right 2.290178e-01	k: 45435	n:200000
KS ci ratio: 2.052763e-01	ci left: 1.633213e-03	ci right 2.011461e-03	k: 363	n:200000
SDK1   200000 perm   70 sec   (2864 perm/sec)   p_kst 1.815000e-03   p_cons 2.271750e-01   p_joint 5.170000e-03

Joint ci ratio: 1.194758e-01	ci left: 4.795188e-03	ci right 5.409071e-03	k: 1070	n:210000
Cons ci ratio: 1.577695e-02	ci left: 2.253902e-01	ci right 2.289792e-01	k: 47708	n:210000
KS ci ratio: 2.003817e-01	ci left: 1.636803e-03	ci right 2.005738e-03	k: 381	n:210000
SDK1   210000 perm   74 sec   (2839 perm/sec)   p_kst 1.814286e-03   p_cons 2.271810e-01   p_joint 5.095238e-03

Joint ci ratio: 1.015866e-01	ci left: 6.381072e-03	ci right 7.068385e-03	k: 1478	n:220000
Cons ci ratio: 1.540322e-02	ci left: 2.256816e-01	ci right 2.291893e-01	k: 50035	n:220000
KS ci ratio: 1.953327e-01	ci left: 1.648809e-03	ci right 2.009973e-03	k: 401	n:220000
SDK1   220000 perm   78 sec   (2815 perm/sec)   p_kst 1.822727e-03   p_cons 2.274318e-01   p_joint 6.718182e-03

Joint ci ratio: 1.001797e-01	ci left: 6.281619e-03	ci right 6.948298e-03	k: 1520	n:230000
Cons ci ratio: 1.506360e-02	ci left: 2.257446e-01	ci right 2.291753e-01	k: 52315	n:230000
KS ci ratio: 1.911013e-01	ci left: 1.651598e-03	ci right 2.004625e-03	k: 419	n:230000
SDK1   230000 perm   82 sec   (2790 perm/sec)   p_kst 1.821739e-03   p_cons 2.274565e-01   p_joint 6.608696e-03

Joint ci ratio: 9.535987e-02	ci left: 6.658123e-03	ci right 7.328866e-03	k: 1677	n:240000
Cons ci ratio: 1.474724e-02	ci left: 2.257617e-01	ci right 2.291199e-01	k: 54585	n:240000
KS ci ratio: 1.864947e-01	ci left: 1.666147e-03	ci right 2.012728e-03	k: 440	n:240000
SDK1   240000 perm   87 sec   (2766 perm/sec)   p_kst 1.833333e-03   p_cons 2.274375e-01   p_joint 6.987500e-03

Joint ci ratio: 9.389186e-02	ci left: 6.598772e-03	ci right 7.252738e-03	k: 1730	n:250000
Cons ci ratio: 1.446516e-02	ci left: 2.254110e-01	ci right 2.286993e-01	k: 56763	n:250000
KS ci ratio: 1.828015e-01	ci left: 1.668173e-03	ci right 2.007543e-03	k: 458	n:250000
SDK1   250000 perm   91 sec   (2747 perm/sec)   p_kst 1.832000e-03   p_cons 2.270520e-01   p_joint 6.920000e-03

Joint ci ratio: 9.532854e-02	ci left: 6.153393e-03	ci right 6.773071e-03	k: 1679	n:260000
Cons ci ratio: 1.419368e-02	ci left: 2.252107e-01	ci right 2.284339e-01	k: 58973	n:260000
KS ci ratio: 1.793194e-01	ci left: 1.670106e-03	ci right 2.002695e-03	k: 476	n:260000
SDK1   260000 perm   95 sec   (2725 perm/sec)   p_kst 1.830769e-03   p_cons 2.268192e-01   p_joint 6.457692e-03

Joint ci ratio: 9.380709e-02	ci left: 6.124371e-03	ci right 6.730742e-03	k: 1734	n:270000
Cons ci ratio: 1.392603e-02	ci left: 2.252991e-01	ci right 2.284623e-01	k: 61257	n:270000
KS ci ratio: 1.763863e-01	ci left: 1.664871e-03	ci right 1.990416e-03	k: 492	n:270000
SDK1   270000 perm   100 sec   (2704 perm/sec)   p_kst 1.822222e-03   p_cons 2.268778e-01   p_joint 6.422222e-03

Joint ci ratio: 9.370929e-02	ci left: 5.919565e-03	ci right 6.505012e-03	k: 1738	n:280000
Cons ci ratio: 1.366338e-02	ci left: 2.256276e-01	ci right 2.287352e-01	k: 63610	n:280000
KS ci ratio: 1.729133e-01	ci left: 1.673719e-03	ci right 1.993877e-03	k: 512	n:280000
SDK1   280000 perm   104 sec   (2683 perm/sec)   p_kst 1.828571e-03   p_cons 2.271786e-01   p_joint 6.207143e-03

Joint ci ratio: 9.228868e-02	ci left: 5.897314e-03	ci right 6.471242e-03	k: 1792	n:290000
Cons ci ratio: 1.342242e-02	ci left: 2.257413e-01	ci right 2.287952e-01	k: 65907	n:290000
KS ci ratio: 1.697973e-01	ci left: 1.678712e-03	ci right 1.993446e-03	k: 531	n:290000
SDK1   290000 perm   109 sec   (2661 perm/sec)   p_kst 1.831034e-03   p_cons 2.272655e-01   p_joint 6.179310e-03

Joint ci ratio: 9.525592e-02	ci left: 5.345850e-03	ci right 5.883768e-03	k: 1683	n:300000
Cons ci ratio: 1.320806e-02	ci left: 2.254688e-01	ci right 2.284698e-01	k: 68090	n:300000
KS ci ratio: 1.679159e-01	ci left: 1.661063e-03	ci right 1.968689e-03	k: 543	n:300000
SDK1   300000 perm   114 sec   (2630 perm/sec)   p_kst 1.810000e-03   p_cons 2.269667e-01   p_joint 5.610000e-03

Joint ci ratio: 9.381906e-02	ci left: 5.337178e-03	ci right 5.865677e-03	k: 1735	n:310000
Cons ci ratio: 1.299372e-02	ci left: 2.254813e-01	ci right 2.284335e-01	k: 70356	n:310000
KS ci ratio: 1.650579e-01	ci left: 1.666217e-03	ci right 1.969024e-03	k: 562	n:310000
SDK1   310000 perm   119 sec   (2611 perm/sec)   p_kst 1.812903e-03   p_cons 2.269548e-01   p_joint 5.596774e-03

Joint ci ratio: 9.527273e-02	ci left: 5.011693e-03	ci right 5.516080e-03	k: 1683	n:320000
Cons ci ratio: 1.278585e-02	ci left: 2.255932e-01	ci right 2.284992e-01	k: 72654	n:320000
KS ci ratio: 1.626213e-01	ci left: 1.665095e-03	ci right 1.962793e-03	k: 579	n:320000
SDK1   320000 perm   124 sec   (2590 perm/sec)   p_kst 1.809375e-03   p_cons 2.270437e-01   p_joint 5.259375e-03

Joint ci ratio: 9.542286e-02	ci left: 4.845014e-03	ci right 5.333436e-03	k: 1678	n:330000
Cons ci ratio: 1.259330e-02	ci left: 2.255414e-01	ci right 2.284027e-01	k: 74900	n:330000
KS ci ratio: 1.604241e-01	ci left: 1.661162e-03	ci right 1.953758e-03	k: 595	n:330000
SDK1   330000 perm   128 sec   (2570 perm/sec)   p_kst 1.803030e-03   p_cons 2.269697e-01   p_joint 5.084848e-03

Joint ci ratio: 9.537297e-02	ci left: 4.708240e-03	ci right 5.182611e-03	k: 1680	n:340000
Cons ci ratio: 1.240264e-02	ci left: 2.256779e-01	ci right 2.284973e-01	k: 77209	n:340000
KS ci ratio: 1.579264e-01	ci left: 1.665961e-03	ci right 1.954401e-03	k: 614	n:340000
SDK1   340000 perm   133 sec   (2551 perm/sec)   p_kst 1.805882e-03   p_cons 2.270853e-01   p_joint 4.941176e-03

Joint ci ratio: 9.651121e-02	ci left: 4.464936e-03	ci right 4.920467e-03	k: 1641	n:350000
Cons ci ratio: 1.222615e-02	ci left: 2.256416e-01	ci right 2.284201e-01	k: 79460	n:350000
KS ci ratio: 1.560357e-01	ci left: 1.659536e-03	ci right 1.943101e-03	k: 629	n:350000
SDK1   350000 perm   138 sec   (2530 perm/sec)   p_kst 1.797143e-03   p_cons 2.270286e-01   p_joint 4.688571e-03

Joint ci ratio: 9.818330e-02	ci left: 4.191823e-03	ci right 4.627325e-03	k: 1586	n:360000
Cons ci ratio: 1.206396e-02	ci left: 2.254052e-01	ci right 2.281437e-01	k: 81638	n:360000
KS ci ratio: 1.534977e-01	ci left: 1.669512e-03	ci right 1.949715e-03	k: 650	n:360000
SDK1   360000 perm   143 sec   (2510 perm/sec)   p_kst 1.805556e-03   p_cons 2.267722e-01   p_joint 4.405556e-03

Joint ci ratio: 9.687974e-02	ci left: 4.191912e-03	ci right 4.621312e-03	k: 1629	n:370000
Cons ci ratio: 1.190815e-02	ci left: 2.251791e-01	ci right 2.278793e-01	k: 83815	n:370000
KS ci ratio: 1.510797e-01	ci left: 1.678985e-03	ci right 1.955938e-03	k: 671	n:370000
SDK1   370000 perm   149 sec   (2482 perm/sec)   p_kst 1.813514e-03   p_cons 2.265270e-01   p_joint 4.402703e-03

Joint ci ratio: 9.600211e-02	ci left: 4.158638e-03	ci right 4.580554e-03	k: 1659	n:380000
Cons ci ratio: 1.175256e-02	ci left: 2.251332e-01	ci right 2.277973e-01	k: 86056	n:380000
KS ci ratio: 1.489880e-01	ci left: 1.682924e-03	ci right 1.956341e-03	k: 690	n:380000
SDK1   380000 perm   154 sec   (2460 perm/sec)   p_kst 1.815789e-03   p_cons 2.264632e-01   p_joint 4.365789e-03

Joint ci ratio: 9.464300e-02	ci left: 4.172151e-03	ci right 4.589112e-03	k: 1707	n:390000
Cons ci ratio: 1.159884e-02	ci left: 2.252127e-01	ci right 2.278427e-01	k: 88345	n:390000
KS ci ratio: 1.465678e-01	ci left: 1.696567e-03	ci right 1.967331e-03	k: 713	n:390000
SDK1   390000 perm   160 sec   (2442 perm/sec)   p_kst 1.828205e-03   p_cons 2.265256e-01   p_joint 4.376923e-03

Joint ci ratio: 9.342021e-02	ci left: 4.177702e-03	ci right 4.589529e-03	k: 1752	n:400000
Cons ci ratio: 1.145623e-02	ci left: 2.251288e-01	ci right 2.277252e-01	k: 90570	n:400000
KS ci ratio: 1.439685e-01	ci left: 1.716792e-03	ci right 1.985507e-03	k: 739	n:400000
SDK1   400000 perm   165 sec   (2424 perm/sec)   p_kst 1.847500e-03   p_cons 2.264250e-01   p_joint 4.380000e-03

Joint ci ratio: 9.219213e-02	ci left: 4.187781e-03	ci right 4.594882e-03	k: 1799	n:410000
Cons ci ratio: 1.131757e-02	ci left: 2.250856e-01	ci right 2.276499e-01	k: 92810	n:410000
KS ci ratio: 1.422490e-01	ci left: 1.717249e-03	ci right 1.982553e-03	k: 757	n:410000
SDK1   410000 perm   170 sec   (2406 perm/sec)   p_kst 1.846341e-03   p_cons 2.263659e-01   p_joint 4.387805e-03

Joint ci ratio: 9.513443e-02	ci left: 3.834592e-03	ci right 4.219919e-03	k: 1690	n:420000
Cons ci ratio: 1.117851e-02	ci left: 2.252111e-01	ci right 2.277451e-01	k: 95120	n:420000
KS ci ratio: 1.405896e-01	ci left: 1.717703e-03	ci right 1.979722e-03	k: 775	n:420000
SDK1   420000 perm   176 sec   (2389 perm/sec)   p_kst 1.845238e-03   p_cons 2.264762e-01   p_joint 4.023810e-03

Joint ci ratio: 9.649457e-02	ci left: 3.638715e-03	ci right 4.009881e-03	k: 1643	n:430000
Cons ci ratio: 1.104914e-02	ci left: 2.251823e-01	ci right 2.276865e-01	k: 97366	n:430000
KS ci ratio: 1.394274e-01	ci left: 1.706930e-03	ci right 1.964974e-03	k: 788	n:430000
SDK1   430000 perm   181 sec   (2370 perm/sec)   p_kst 1.832558e-03   p_cons 2.264326e-01   p_joint 3.820930e-03

Joint ci ratio: 9.525634e-02	ci left: 3.651402e-03	ci right 4.018816e-03	k: 1686	n:440000
Cons ci ratio: 1.092664e-02	ci left: 2.250756e-01	ci right 2.275507e-01	k: 99577	n:440000
KS ci ratio: 1.379494e-01	ci left: 1.705431e-03	ci right 1.960291e-03	k: 805	n:440000
SDK1   440000 perm   187 sec   (2352 perm/sec)   p_kst 1.829545e-03   p_cons 2.263114e-01   p_joint 3.831818e-03

Joint ci ratio: 9.149842e-02	ci left: 3.876298e-03	ci right 4.250132e-03	k: 1827	n:450000
Cons ci ratio: 9.992828e-03	ci left: 2.535495e-01	ci right 2.560981e-01	k: 114670	n:450000
KS ci ratio: 1.357757e-01	ci left: 1.723333e-03	ci right 1.976483e-03	k: 831	n:450000
SDK1   450000 perm   193 sec   (2334 perm/sec)   p_kst 1.846667e-03   p_cons 2.548222e-01   p_joint 4.060000e-03

Joint ci ratio: 9.041639e-02	ci left: 3.885508e-03	ci right 4.255564e-03	k: 1871	n:460000
Cons ci ratio: 9.885834e-03	ci left: 2.534783e-01	ci right 2.559987e-01	k: 117179	n:460000
KS ci ratio: 1.340936e-01	ci left: 1.729981e-03	ci right 1.980708e-03	k: 852	n:460000
SDK1   460000 perm   199 sec   (2317 perm/sec)   p_kst 1.852174e-03   p_cons 2.547370e-01   p_joint 4.067391e-03

Joint ci ratio: 8.974891e-02	ci left: 3.861068e-03	ci right 4.225939e-03	k: 1899	n:470000
Cons ci ratio: 9.781986e-03	ci left: 2.534187e-01	ci right 2.559119e-01	k: 119692	n:470000
KS ci ratio: 1.331612e-01	ci left: 1.717851e-03	ci right 1.964951e-03	k: 864	n:470000
SDK1   470000 perm   205 sec   (2298 perm/sec)   p_kst 1.838298e-03   p_cons 2.546638e-01   p_joint 4.040426e-03

Joint ci ratio: 8.923551e-02	ci left: 3.825434e-03	ci right 4.184761e-03	k: 1921	n:480000
Cons ci ratio: 9.676721e-03	ci left: 2.535428e-01	ci right 2.560102e-01	k: 122292	n:480000
KS ci ratio: 1.323992e-01	ci left: 1.702202e-03	ci right 1.945541e-03	k: 874	n:480000
SDK1   480000 perm   210 sec   (2281 perm/sec)   p_kst 1.820833e-03   p_cons 2.547750e-01   p_joint 4.002083e-03

Joint ci ratio: 9.410670e-02	ci left: 3.362471e-03	ci right 3.696503e-03	k: 1728	n:490000
Cons ci ratio: 9.575194e-03	ci left: 2.536456e-01	ci right 2.560880e-01	k: 124884	n:490000
KS ci ratio: 1.307650e-01	ci left: 1.710884e-03	ci right 1.952210e-03	k: 896	n:490000
SDK1   490000 perm   216 sec   (2264 perm/sec)   p_kst 1.828571e-03   p_cons 2.548653e-01   p_joint 3.526531e-03

Joint ci ratio: 8.479567e-02	ci left: 4.075478e-03	ci right 4.438304e-03	k: 2127	n:500000
Cons ci ratio: 9.482238e-03	ci left: 2.535267e-01	ci right 2.559441e-01	k: 127367	n:500000
KS ci ratio: 1.290492e-01	ci left: 1.723107e-03	ci right 1.962724e-03	k: 920	n:500000
SDK1   500000 perm   222 sec   (2248 perm/sec)   p_kst 1.840000e-03   p_cons 2.547340e-01   p_joint 4.254000e-03

Joint ci ratio: 8.763584e-02	ci left: 3.736538e-03	ci right 4.080901e-03	k: 1992	n:510000
Cons ci ratio: 9.384567e-03	ci left: 2.537102e-01	ci right 2.561043e-01	k: 130002	n:510000
KS ci ratio: 1.275346e-01	ci left: 1.731074e-03	ci right 1.968760e-03	k: 942	n:510000
SDK1   510000 perm   228 sec   (2233 perm/sec)   p_kst 1.847059e-03   p_cons 2.549059e-01   p_joint 3.905882e-03

Joint ci ratio: 7.561108e-02	ci left: 4.947816e-03	ci right 5.338498e-03	k: 2673	n:520000
Cons ci ratio: 9.290604e-03	ci left: 2.538561e-01	ci right 2.562274e-01	k: 132621	n:520000
KS ci ratio: 1.257460e-01	ci left: 1.748063e-03	ci right 1.984465e-03	k: 969	n:520000
SDK1   520000 perm   234 sec   (2218 perm/sec)   p_kst 1.863462e-03   p_cons 2.550404e-01   p_joint 5.140385e-03

Joint ci ratio: 7.499710e-02	ci left: 4.935916e-03	ci right 5.322355e-03	k: 2717	n:530000
Cons ci ratio: 9.199864e-03	ci left: 2.539777e-01	ci right 2.563269e-01	k: 135230	n:530000
KS ci ratio: 1.247219e-01	ci left: 1.744324e-03	ci right 1.978156e-03	k: 985	n:530000
SDK1   530000 perm   241 sec   (2202 perm/sec)   p_kst 1.858491e-03   p_cons 2.551509e-01   p_joint 5.126415e-03

Joint ci ratio: 7.419560e-02	ci left: 4.951732e-03	ci right 5.335088e-03	k: 2776	n:540000
Cons ci ratio: 9.110177e-03	ci left: 2.541596e-01	ci right 2.564875e-01	k: 137874	n:540000
KS ci ratio: 1.228049e-01	ci left: 1.767653e-03	ci right 2.000706e-03	k: 1016	n:540000
SDK1   540000 perm   247 sec   (2184 perm/sec)   p_kst 1.881481e-03   p_cons 2.553222e-01   p_joint 5.140741e-03

Joint ci ratio: 7.304479e-02	ci left: 5.018762e-03	ci right 5.401024e-03	k: 2864	n:550000
Cons ci ratio: 9.028844e-03	ci left: 2.540918e-01	ci right 2.563981e-01	k: 140384	n:550000
KS ci ratio: 1.219096e-01	ci left: 1.761952e-03	ci right 1.992437e-03	k: 1031	n:550000
SDK1   550000 perm   254 sec   (2167 perm/sec)   p_kst 1.874545e-03   p_cons 2.552436e-01   p_joint 5.207273e-03

Joint ci ratio: 7.235341e-02	ci left: 5.025570e-03	ci right 5.404576e-03	k: 2919	n:560000
Cons ci ratio: 8.949609e-03	ci left: 2.540282e-01	ci right 2.563136e-01	k: 142895	n:560000
KS ci ratio: 1.208603e-01	ci left: 1.761655e-03	ci right 1.989976e-03	k: 1049	n:560000
SDK1   560000 perm   260 sec   (2151 perm/sec)   p_kst 1.873214e-03   p_cons 2.551696e-01   p_joint 5.212500e-03

Joint ci ratio: 7.228213e-02	ci left: 4.947731e-03	ci right 5.320484e-03	k: 2925	n:570000
Cons ci ratio: 8.872751e-03	ci left: 2.539529e-01	ci right 2.562180e-01	k: 145398	n:570000
KS ci ratio: 1.196692e-01	ci left: 1.766483e-03	ci right 1.993014e-03	k: 1070	n:570000
SDK1   570000 perm   267 sec   (2135 perm/sec)   p_kst 1.877193e-03   p_cons 2.550842e-01   p_joint 5.131579e-03

Joint ci ratio: 7.173303e-02	ci left: 4.938614e-03	ci right 5.307735e-03	k: 2970	n:580000
Cons ci ratio: 8.795326e-03	ci left: 2.539888e-01	ci right 2.562343e-01	k: 147964	n:580000
KS ci ratio: 1.185128e-01	ci left: 1.771155e-03	ci right 1.995936e-03	k: 1091	n:580000
SDK1   580000 perm   274 sec   (2119 perm/sec)   p_kst 1.881034e-03   p_cons 2.551103e-01   p_joint 5.120690e-03

Joint ci ratio: 7.129136e-02	ci left: 4.916497e-03	ci right 5.281609e-03	k: 3007	n:590000
Cons ci ratio: 8.719736e-03	ci left: 2.540304e-01	ci right 2.562568e-01	k: 150534	n:590000
KS ci ratio: 1.174950e-01	ci left: 1.772388e-03	ci right 1.995260e-03	k: 1110	n:590000
SDK1   590000 perm   280 sec   (2104 perm/sec)   p_kst 1.881356e-03   p_cons 2.551424e-01   p_joint 5.096610e-03

Joint ci ratio: 6.791609e-02	ci left: 5.334084e-03	ci right 5.710715e-03	k: 3312	n:600000
Cons ci ratio: 8.870613e-03	ci left: 2.444613e-01	ci right 2.466411e-01	k: 147330	n:600000
KS ci ratio: 1.162970e-01	ci left: 1.780061e-03	ci right 2.001459e-03	k: 1133	n:600000
SDK1   600000 perm   287 sec   (2089 perm/sec)   p_kst 1.888333e-03   p_cons 2.455500e-01   p_joint 5.520000e-03

Joint ci ratio: 6.774464e-02	ci left: 5.274030e-03	ci right 5.645444e-03	k: 3329	n:610000
Cons ci ratio: 8.798012e-03	ci left: 2.444531e-01	ci right 2.466149e-01	k: 149775	n:610000
KS ci ratio: 1.154854e-01	ci left: 1.776349e-03	ci right 1.995638e-03	k: 1149	n:610000
SDK1   610000 perm   294 sec   (2074 perm/sec)   p_kst 1.883607e-03   p_cons 2.455328e-01   p_joint 5.457377e-03

Joint ci ratio: 6.537203e-02	ci left: 5.577580e-03	ci right 5.956093e-03	k: 3574	n:620000
Cons ci ratio: 8.727127e-03	ci left: 2.444468e-01	ci right 2.465911e-01	k: 152221	n:620000
KS ci ratio: 1.144940e-01	ci left: 1.779028e-03	ci right 1.996636e-03	k: 1169	n:620000
SDK1   620000 perm   301 sec   (2059 perm/sec)   p_kst 1.885484e-03   p_cons 2.455177e-01   p_joint 5.764516e-03

Joint ci ratio: 6.500123e-02	ci left: 5.553063e-03	ci right 5.927695e-03	k: 3615	n:630000
Cons ci ratio: 8.657112e-03	ci left: 2.444757e-01	ci right 2.466029e-01	k: 154689	n:630000
KS ci ratio: 1.134322e-01	ci left: 1.784715e-03	ci right 2.000859e-03	k: 1191	n:630000
SDK1   630000 perm   308 sec   (2045 perm/sec)   p_kst 1.890476e-03   p_cons 2.455381e-01   p_joint 5.738095e-03

Joint ci ratio: 7.827810e-02	ci left: 3.750299e-03	ci right 4.057343e-03	k: 2497	n:640000
Cons ci ratio: 8.663696e-03	ci left: 2.413037e-01	ci right 2.434049e-01	k: 155106	n:640000
KS ci ratio: 1.128192e-01	ci left: 1.776566e-03	ci right 1.990483e-03	k: 1204	n:640000
SDK1   640000 perm   315 sec   (2031 perm/sec)   p_kst 1.881250e-03   p_cons 2.423531e-01   p_joint 3.901563e-03

Joint ci ratio: 7.770487e-02	ci left: 3.748415e-03	ci right 4.052956e-03	k: 2534	n:650000
Cons ci ratio: 8.596778e-03	ci left: 2.413125e-01	ci right 2.433975e-01	k: 157530	n:650000
KS ci ratio: 1.120319e-01	ci left: 1.774653e-03	ci right 1.986749e-03	k: 1221	n:650000
SDK1   650000 perm   322 sec   (2017 perm/sec)   p_kst 1.878462e-03   p_cons 2.423538e-01   p_joint 3.898462e-03

Joint ci ratio: 7.724965e-02	ci left: 3.736194e-03	ci right 4.037884e-03	k: 2564	n:660000
Cons ci ratio: 8.533745e-03	ci left: 2.412198e-01	ci right 2.432886e-01	k: 159887	n:660000
KS ci ratio: 1.114864e-01	ci left: 1.765437e-03	ci right 1.975337e-03	k: 1233	n:660000
SDK1   660000 perm   329 sec   (2003 perm/sec)   p_kst 1.868182e-03   p_cons 2.422530e-01   p_joint 3.884848e-03

Joint ci ratio: 7.655102e-02	ci left: 3.749231e-03	ci right 4.049114e-03	k: 2611	n:670000
Cons ci ratio: 8.467465e-03	ci left: 2.413295e-01	ci right 2.433831e-01	k: 162378	n:670000
KS ci ratio: 1.105054e-01	ci left: 1.771012e-03	ci right 1.979601e-03	k: 1255	n:670000
SDK1   670000 perm   337 sec   (1990 perm/sec)   p_kst 1.873134e-03   p_cons 2.423552e-01   p_joint 3.897015e-03

Joint ci ratio: 7.630435e-02	ci left: 3.718615e-03	ci right 4.015048e-03	k: 2628	n:680000
Cons ci ratio: 8.403815e-03	ci left: 2.413877e-01	ci right 2.434263e-01	k: 164836	n:680000
KS ci ratio: 1.096789e-01	ci left: 1.772140e-03	ci right 1.979200e-03	k: 1274	n:680000
SDK1   680000 perm   344 sec   (1977 perm/sec)   p_kst 1.873529e-03   p_cons 2.424059e-01   p_joint 3.864706e-03

Joint ci ratio: 7.577310e-02	ci left: 3.717326e-03	ci right 4.011502e-03	k: 2665	n:690000
Cons ci ratio: 8.343620e-03	ci left: 2.413545e-01	ci right 2.433781e-01	k: 167232	n:690000
KS ci ratio: 1.089129e-01	ci left: 1.771830e-03	ci right 1.977315e-03	k: 1292	n:690000
SDK1   690000 perm   351 sec   (1964 perm/sec)   p_kst 1.872464e-03   p_cons 2.423652e-01   p_joint 3.862319e-03

Joint ci ratio: 7.529475e-02	ci left: 3.711874e-03	ci right 4.003684e-03	k: 2699	n:700000
Cons ci ratio: 8.282509e-03	ci left: 2.414193e-01	ci right 2.434286e-01	k: 169696	n:700000
KS ci ratio: 1.082454e-01	ci left: 1.768755e-03	ci right 1.972546e-03	k: 1308	n:700000
SDK1   700000 perm   359 sec   (1951 perm/sec)   p_kst 1.868571e-03   p_cons 2.424229e-01   p_joint 3.855714e-03

Joint ci ratio: 7.599213e-02	ci left: 3.591877e-03	ci right 3.876984e-03	k: 2650	n:710000
Cons ci ratio: 8.227042e-03	ci left: 2.412896e-01	ci right 2.432843e-01	k: 172023	n:710000
KS ci ratio: 1.072661e-01	ci left: 1.776735e-03	ci right 1.979477e-03	k: 1332	n:710000
SDK1   710000 perm   366 sec   (1937 perm/sec)   p_kst 1.876056e-03   p_cons 2.422859e-01   p_joint 3.732394e-03

Joint ci ratio: 7.539697e-02	ci left: 3.599220e-03	ci right 3.882574e-03	k: 2692	n:720000
Cons ci ratio: 8.169706e-03	ci left: 2.412968e-01	ci right 2.432775e-01	k: 174446	n:720000
KS ci ratio: 1.063522e-01	ci left: 1.783149e-03	ci right 1.984781e-03	k: 1355	n:720000
SDK1   720000 perm   374 sec   (1925 perm/sec)   p_kst 1.881944e-03   p_cons 2.422861e-01   p_joint 3.738889e-03

Joint ci ratio: 7.493944e-02	ci left: 3.594271e-03	ci right 3.875443e-03	k: 2725	n:730000
Cons ci ratio: 8.116823e-03	ci left: 2.411560e-01	ci right 2.431227e-01	k: 176761	n:730000
KS ci ratio: 1.057305e-01	ci left: 1.780059e-03	ci right 1.980091e-03	k: 1371	n:730000
SDK1   730000 perm   382 sec   (1913 perm/sec)   p_kst 1.878082e-03   p_cons 2.421384e-01   p_joint 3.732877e-03

Joint ci ratio: 7.443600e-02	ci left: 3.594766e-03	ci right 3.874006e-03	k: 2762	n:740000
Cons ci ratio: 8.063319e-03	ci left: 2.410933e-01	ci right 2.430465e-01	k: 179131	n:740000
KS ci ratio: 1.048926e-01	ci left: 1.784951e-03	ci right 1.983846e-03	k: 1393	n:740000
SDK1   740000 perm   389 sec   (1901 perm/sec)   p_kst 1.882432e-03   p_cons 2.420689e-01   p_joint 3.732432e-03

Joint ci ratio: 7.497079e-02	ci left: 3.495800e-03	ci right 3.769389e-03	k: 2723	n:750000
Cons ci ratio: 8.011179e-03	ci left: 2.410177e-01	ci right 2.429576e-01	k: 181490	n:750000
KS ci ratio: 1.041112e-01	ci left: 1.788420e-03	ci right 1.986126e-03	k: 1414	n:750000
SDK1   750000 perm   397 sec   (1889 perm/sec)   p_kst 1.885333e-03   p_cons 2.419867e-01   p_joint 3.630667e-03

Joint ci ratio: 7.175253e-02	ci left: 3.771446e-03	ci right 4.053409e-03	k: 2972	n:760000
Cons ci ratio: 7.959952e-03	ci left: 2.409481e-01	ci right 2.428750e-01	k: 183852	n:760000
KS ci ratio: 1.033110e-01	ci left: 1.793085e-03	ci right 1.989690e-03	k: 1436	n:760000
SDK1   760000 perm   405 sec   (1877 perm/sec)   p_kst 1.889474e-03   p_cons 2.419105e-01   p_joint 3.910526e-03

Joint ci ratio: 7.119164e-02	ci left: 3.782415e-03	ci right 4.062896e-03	k: 3019	n:770000
Cons ci ratio: 7.908071e-03	ci left: 2.409555e-01	ci right 2.428698e-01	k: 186272	n:770000
KS ci ratio: 1.023884e-01	ci left: 1.802696e-03	ci right 1.998484e-03	k: 1462	n:770000
SDK1   770000 perm   413 sec   (1865 perm/sec)   p_kst 1.898701e-03   p_cons 2.419117e-01   p_joint 3.920779e-03

Joint ci ratio: 7.146715e-02	ci left: 3.704956e-03	ci right 3.980800e-03	k: 2996	n:780000
Cons ci ratio: 7.857905e-03	ci left: 2.409295e-01	ci right 2.428314e-01	k: 188666	n:780000
KS ci ratio: 1.017299e-01	ci left: 1.803322e-03	ci right 1.997843e-03	k: 1481	n:780000
SDK1   780000 perm   421 sec   (1853 perm/sec)   p_kst 1.898718e-03   p_cons 2.418795e-01   p_joint 3.841026e-03

Joint ci ratio: 7.095970e-02	ci left: 3.711519e-03	ci right 3.985810e-03	k: 3039	n:790000
Cons ci ratio: 7.808412e-03	ci left: 2.409168e-01	ci right 2.428066e-01	k: 191070	n:790000
KS ci ratio: 1.010840e-01	ci left: 1.803936e-03	ci right 1.997214e-03	k: 1500	n:790000
SDK1   790000 perm   429 sec   (1842 perm/sec)   p_kst 1.898734e-03   p_cons 2.418608e-01   p_joint 3.846835e-03

Joint ci ratio: 7.227379e-02	ci left: 3.531303e-03	ci right 3.797311e-03	k: 2930	n:800000
Cons ci ratio: 7.758573e-03	ci left: 2.409644e-01	ci right 2.428425e-01	k: 193522	n:800000
KS ci ratio: 1.005165e-01	ci left: 1.802101e-03	ci right 1.994035e-03	k: 1517	n:800000
SDK1   800000 perm   437 sec   (1831 perm/sec)   p_kst 1.896250e-03   p_cons 2.419025e-01   p_joint 3.662500e-03

Joint ci ratio: 7.252419e-02	ci left: 3.463458e-03	ci right 3.725297e-03	k: 2910	n:810000
Cons ci ratio: 7.708535e-03	ci left: 2.410651e-01	ci right 2.429318e-01	k: 196018	n:810000
KS ci ratio: 9.995850e-02	ci left: 1.800314e-03	ci right 1.990931e-03	k: 1534	n:810000
SDK1   810000 perm   445 sec   (1820 perm/sec)   p_kst 1.893827e-03   p_cons 2.419975e-01   p_joint 3.592593e-03

Outputting figure to mutsig2_images.part000000000153/SDK1.30_6822_810000_0.0018938_0.242_0.0035926.png
                gene_name: SDK1
               theta_stop: 0.100 
                    nperm: 810000 
                     p_ks: 0.0019 
        ci_ks_bounds_left: 0.0018 
       ci_ks_bounds_right: 0.0020 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.0036 
     ci_joint_bounds_left: 0.0035 
    ci_joint_bounds_right: 0.0037 

Current progress: 2 percent done.
SCN10A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.040908e-01	ci left: 1.176982e-01	ci right 1.307216e-01	k: 1241	n:10000
Cons ci ratio: 2.309509e-01	ci left: 2.476030e-02	ci right 3.131851e-02	k: 279	n:10000
KS ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
SCN10A   10000 perm   2 sec   (4325 perm/sec)   p_kst 5.242000e-01   p_cons 2.790000e-02   p_joint 1.241000e-01

Joint ci ratio: 7.394489e-02	ci left: 1.186258e-01	ci right 1.277841e-01	k: 2463	n:20000
Cons ci ratio: 1.588432e-01	ci left: 2.719860e-02	ci right 3.193948e-02	k: 590	n:20000
KS ci ratio: 2.624774e-02	ci left: 5.202522e-01	ci right 5.341399e-01	k: 10544	n:20000
SCN10A   20000 perm   5 sec   (3843 perm/sec)   p_kst 5.272000e-01   p_cons 2.950000e-02   p_joint 1.231500e-01

Joint ci ratio: 6.620417e-02	ci left: 1.011587e-01	ci right 1.081181e-01	k: 3138	n:30000
Cons ci ratio: 1.397197e-01	ci left: 2.377778e-02	ci right 2.738156e-02	k: 766	n:30000
KS ci ratio: 2.146610e-02	ci left: 5.207310e-01	ci right 5.320639e-01	k: 15792	n:30000
SCN10A   30000 perm   8 sec   (3751 perm/sec)   p_kst 5.264000e-01   p_cons 2.553333e-02   p_joint 1.046000e-01

Joint ci ratio: 5.736785e-02	ci left: 1.015184e-01	ci right 1.075391e-01	k: 4180	n:40000
Cons ci ratio: 1.227788e-01	ci left: 2.332230e-02	ci right 2.639721e-02	k: 993	n:40000
KS ci ratio: 1.879742e-02	ci left: 5.159655e-01	ci right 5.257815e-01	k: 20835	n:40000
SCN10A   40000 perm   11 sec   (3687 perm/sec)   p_kst 5.208750e-01   p_cons 2.482500e-02   p_joint 1.045000e-01

Joint ci ratio: 5.273264e-02	ci left: 9.688959e-02	ci right 1.021570e-01	k: 4975	n:50000
Cons ci ratio: 1.107111e-01	ci left: 2.310422e-02	ci right 2.583137e-02	k: 1222	n:50000
KS ci ratio: 1.684389e-02	ci left: 5.155698e-01	ci right 5.243479e-01	k: 25998	n:50000
SCN10A   50000 perm   14 sec   (3501 perm/sec)   p_kst 5.199600e-01   p_cons 2.444000e-02   p_joint 9.950000e-02

Joint ci ratio: 4.830092e-02	ci left: 9.652243e-02	ci right 1.013164e-01	k: 5934	n:60000
Cons ci ratio: 1.017279e-01	ci left: 2.292012e-02	ci right 2.539287e-02	k: 1448	n:60000
KS ci ratio: 1.539260e-02	ci left: 5.154264e-01	ci right 5.234384e-01	k: 31166	n:60000
SCN10A   60000 perm   17 sec   (3484 perm/sec)   p_kst 5.194333e-01   p_cons 2.413333e-02   p_joint 9.890000e-02

Joint ci ratio: 4.524624e-02	ci left: 9.464746e-02	ci right 9.904317e-02	k: 6778	n:70000
Cons ci ratio: 9.321170e-02	ci left: 2.349300e-02	ci right 2.580377e-02	k: 1724	n:70000
KS ci ratio: 1.426524e-02	ci left: 5.152194e-01	ci right 5.226362e-01	k: 36325	n:70000
SCN10A   70000 perm   20 sec   (3462 perm/sec)   p_kst 5.189286e-01   p_cons 2.462857e-02   p_joint 9.682857e-02

Outputting figure to mutsig2_images.part000000000153/SCN10A.24_5979_70000_0.51893_0.024629_0.096829.png
                gene_name: SCN10A
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.099 

Current progress: 4 percent done.
SCN1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.092516e-02	ci left: 4.685668e-01	ci right 4.882458e-01	k: 4784	n:10000
Cons ci ratio: 1.056902e-02	ci left: 9.271989e-01	ci right 9.371476e-01	k: 9323	n:10000
KS ci ratio: 6.811321e-02	ci left: 2.402520e-01	ci right 2.572946e-01	k: 2487	n:10000
SCN1A   10000 perm   2 sec   (4214 perm/sec)   p_kst 2.487000e-01   p_cons 9.323000e-01   p_joint 4.784000e-01

Outputting figure to mutsig2_images.part000000000153/SCN1A.23_6134_10000_0.2487_0.9323_0.4784.png
                gene_name: SCN1A
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 6 percent done.
SCN11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.939054e-02	ci left: 4.876522e-01	ci right 5.073492e-01	k: 4975	n:10000
Cons ci ratio: 4.192217e-02	ci left: 4.565833e-01	ci right 4.762363e-01	k: 4664	n:10000
KS ci ratio: 4.972318e-02	ci left: 3.736565e-01	ci right 3.928116e-01	k: 3832	n:10000
SCN11A   10000 perm   2 sec   (4544 perm/sec)   p_kst 3.832000e-01   p_cons 4.664000e-01   p_joint 4.975000e-01

Outputting figure to mutsig2_images.part000000000153/SCN11A.22_5480_10000_0.3832_0.4664_0.4975.png
                gene_name: SCN11A
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 8 percent done.
SCN2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.680497e-01	ci left: 4.724933e-02	ci right 5.601420e-02	k: 515	n:10000
Cons ci ratio: 3.880608e-01	ci left: 8.143597e-03	ci right 1.214950e-02	k: 100	n:10000
KS ci ratio: 2.073389e-02	ci left: 7.731682e-01	ci right 7.894676e-01	k: 7814	n:10000
SCN2A   10000 perm   2 sec   (4402 perm/sec)   p_kst 7.814000e-01   p_cons 1.000000e-02   p_joint 5.150000e-02

Joint ci ratio: 9.947345e-02	ci left: 6.845501e-02	ci right 7.567000e-02	k: 1440	n:20000
Cons ci ratio: 2.305348e-01	ci left: 1.260619e-02	ci right 1.593723e-02	k: 284	n:20000
KS ci ratio: 1.468456e-02	ci left: 7.750513e-01	ci right 7.865669e-01	k: 15617	n:20000
SCN2A   20000 perm   5 sec   (4035 perm/sec)   p_kst 7.808500e-01   p_cons 1.420000e-02   p_joint 7.200000e-02

Joint ci ratio: 7.662683e-02	ci left: 7.715067e-02	ci right 8.333091e-02	k: 2406	n:30000
Cons ci ratio: 1.906213e-01	ci left: 1.257399e-02	ci right 1.525470e-02	k: 416	n:30000
KS ci ratio: 1.194958e-02	ci left: 7.772840e-01	ci right 7.866614e-01	k: 23460	n:30000
SCN2A   30000 perm   8 sec   (3901 perm/sec)   p_kst 7.820000e-01   p_cons 1.386667e-02   p_joint 8.020000e-02

Joint ci ratio: 7.403216e-02	ci left: 6.307000e-02	ci right 6.794331e-02	k: 2619	n:40000
Cons ci ratio: 1.601873e-01	ci left: 1.356744e-02	ci right 1.595376e-02	k: 589	n:40000
KS ci ratio: 1.076351e-02	ci left: 7.641334e-01	ci right 7.724276e-01	k: 30732	n:40000
SCN2A   40000 perm   11 sec   (3805 perm/sec)   p_kst 7.683000e-01   p_cons 1.472500e-02   p_joint 6.547500e-02

Joint ci ratio: 6.710898e-02	ci left: 6.173224e-02	ci right 6.603856e-02	k: 3193	n:50000
Cons ci ratio: 1.442219e-01	ci left: 1.350904e-02	ci right 1.562787e-02	k: 727	n:50000
KS ci ratio: 9.625550e-03	ci left: 7.646366e-01	ci right 7.720522e-01	k: 38418	n:50000
SCN2A   50000 perm   13 sec   (3747 perm/sec)   p_kst 7.683600e-01   p_cons 1.454000e-02   p_joint 6.386000e-02

Joint ci ratio: 5.987856e-02	ci left: 6.466696e-02	ci right 6.867507e-02	k: 3999	n:60000
Cons ci ratio: 1.313970e-01	ci left: 1.365546e-02	ci right 1.559191e-02	k: 876	n:60000
KS ci ratio: 8.815925e-03	ci left: 7.637805e-01	ci right 7.705603e-01	k: 46031	n:60000
SCN2A   60000 perm   16 sec   (3700 perm/sec)   p_kst 7.671833e-01   p_cons 1.460000e-02   p_joint 6.665000e-02

Joint ci ratio: 5.692593e-02	ci left: 6.163399e-02	ci right 6.525944e-02	k: 4440	n:70000
Cons ci ratio: 1.211802e-01	ci left: 1.383533e-02	ci right 1.563379e-02	k: 1030	n:70000
KS ci ratio: 8.133507e-03	ci left: 7.652854e-01	ci right 7.715495e-01	k: 53790	n:70000
SCN2A   70000 perm   19 sec   (3642 perm/sec)   p_kst 7.684286e-01   p_cons 1.471429e-02   p_joint 6.342857e-02

Joint ci ratio: 4.932832e-02	ci left: 7.135493e-02	ci right 7.497610e-02	k: 5852	n:80000
Cons ci ratio: 1.127380e-01	ci left: 1.404754e-02	ci right 1.573791e-02	k: 1190	n:80000
KS ci ratio: 7.610413e-03	ci left: 7.653855e-01	ci right 7.712451e-01	k: 61466	n:80000
SCN2A   80000 perm   22 sec   (3584 perm/sec)   p_kst 7.683250e-01   p_cons 1.487500e-02   p_joint 7.315000e-02

Joint ci ratio: 4.473790e-02	ci left: 7.683887e-02	ci right 8.036612e-02	k: 7073	n:90000
Cons ci ratio: 1.056470e-01	ci left: 1.427008e-02	ci right 1.587251e-02	k: 1355	n:90000
KS ci ratio: 7.292948e-03	ci left: 7.596835e-01	ci right 7.652551e-01	k: 68623	n:90000
SCN2A   90000 perm   25 sec   (3533 perm/sec)   p_kst 7.624778e-01   p_cons 1.505556e-02   p_joint 7.858889e-02

Joint ci ratio: 4.239823e-02	ci left: 7.707792e-02	ci right 8.042656e-02	k: 7874	n:100000
Cons ci ratio: 1.001132e-01	ci left: 1.434349e-02	ci right 1.586482e-02	k: 1509	n:100000
KS ci ratio: 6.921139e-03	ci left: 7.596993e-01	ci right 7.649855e-01	k: 76235	n:100000
SCN2A   100000 perm   29 sec   (3474 perm/sec)   p_kst 7.623500e-01   p_cons 1.509000e-02   p_joint 7.874000e-02

Joint ci ratio: 4.036069e-02	ci left: 7.738552e-02	ci right 8.058217e-02	k: 8687	n:110000
Cons ci ratio: 9.589487e-02	ci left: 1.424557e-02	ci right 1.568926e-02	k: 1645	n:110000
KS ci ratio: 6.604593e-03	ci left: 7.595176e-01	ci right 7.645595e-01	k: 83825	n:110000
SCN2A   110000 perm   32 sec   (3401 perm/sec)   p_kst 7.620455e-01   p_cons 1.495455e-02   p_joint 7.897273e-02

Outputting figure to mutsig2_images.part000000000153/SCN2A.22_6218_110000_0.76205_0.014955_0.078973.png
                gene_name: SCN2A
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.081 

Current progress: 9 percent done.
SCN7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.020691e-02	ci left: 1.850099e-01	ci right 2.005695e-01	k: 1927	n:10000
Cons ci ratio: 1.626226e-02	ci left: 8.461108e-01	ci right 8.600828e-01	k: 8532	n:10000
KS ci ratio: 1.284434e-01	ci left: 7.970251e-02	ci right 9.074052e-02	k: 851	n:10000
SCN7A   10000 perm   2 sec   (4692 perm/sec)   p_kst 8.510000e-02   p_cons 8.532000e-01   p_joint 1.927000e-01

Joint ci ratio: 5.505822e-02	ci left: 1.966028e-01	ci right 2.077840e-01	k: 4043	n:20000
Cons ci ratio: 1.144787e-02	ci left: 8.493340e-01	ci right 8.591628e-01	k: 17086	n:20000
KS ci ratio: 8.878972e-02	ci left: 8.484372e-02	ci right 9.277630e-02	k: 1775	n:20000
SCN7A   20000 perm   5 sec   (4280 perm/sec)   p_kst 8.875000e-02   p_cons 8.543000e-01   p_joint 2.021500e-01

Outputting figure to mutsig2_images.part000000000153/SCN7A.20_5145_20000_0.08875_0.8543_0.20215.png
                gene_name: SCN7A
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 11 percent done.
SCN9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.506982e-02	ci left: 7.006935e-01	ci right 7.185842e-01	k: 7097	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
SCN9A   10000 perm   2 sec   (4412 perm/sec)   p_kst 1   p_cons 7.097000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SCN9A.19_6038_10000_1_0.7097_1.png
                gene_name: SCN9A
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
SCN3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.000383e-01	ci left: 1.264020e-01	ci right 1.398125e-01	k: 1330	n:10000
Cons ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
KS ci ratio: 1.218371e-01	ci left: 8.805737e-02	ci right 9.958050e-02	k: 937	n:10000
SCN3A   10000 perm   2 sec   (4296 perm/sec)   p_kst 9.370000e-02   p_cons 2.266000e-01   p_joint 1.330000e-01

Joint ci ratio: 6.717203e-02	ci left: 1.405907e-01	ci right 1.504126e-01	k: 2909	n:20000
Cons ci ratio: 4.593836e-02	ci left: 2.607292e-01	ci right 2.730386e-01	k: 5337	n:20000
KS ci ratio: 8.749820e-02	ci left: 8.719570e-02	ci right 9.522361e-02	k: 1823	n:20000
SCN3A   20000 perm   5 sec   (3982 perm/sec)   p_kst 9.115000e-02   p_cons 2.668500e-01   p_joint 1.454500e-01

Outputting figure to mutsig2_images.part000000000153/SCN3A.16_6203_20000_0.09115_0.26685_0.14545.png
                gene_name: SCN3A
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 15 percent done.
SCN5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.216491e-02	ci left: 2.755719e-01	ci right 2.933539e-01	k: 2844	n:10000
Cons ci ratio: 6.315665e-02	ci left: 2.692348e-01	ci right 2.868947e-01	k: 2780	n:10000
KS ci ratio: 6.555229e-02	ci left: 2.546878e-01	ci right 2.720503e-01	k: 2633	n:10000
SCN5A   10000 perm   2 sec   (4834 perm/sec)   p_kst 2.633000e-01   p_cons 2.780000e-01   p_joint 2.844000e-01

Outputting figure to mutsig2_images.part000000000153/SCN5A.16_6255_10000_0.2633_0.278_0.2844.png
                gene_name: SCN5A
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 17 percent done.
SCN4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.885079e-02	ci left: 4.945505e-01	ci right 5.142470e-01	k: 5044	n:10000
Cons ci ratio: 6.434124e-02	ci left: 2.619103e-01	ci right 2.794235e-01	k: 2706	n:10000
KS ci ratio: 2.485708e-02	ci left: 7.042245e-01	ci right 7.220512e-01	k: 7132	n:10000
SCN4A   10000 perm   2 sec   (4818 perm/sec)   p_kst 7.132000e-01   p_cons 2.706000e-01   p_joint 5.044000e-01

Outputting figure to mutsig2_images.part000000000153/SCN4A.15_5607_10000_0.7132_0.2706_0.5044.png
                gene_name: SCN4A
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 19 percent done.
SCUBE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.698613e-02	ci left: 4.006365e-01	ci right 4.200158e-01	k: 4103	n:10000
Cons ci ratio: 5.698598e-02	ci left: 3.119521e-01	ci right 3.303522e-01	k: 3211	n:10000
KS ci ratio: 4.916000e-02	ci left: 3.790301e-01	ci right 3.982348e-01	k: 3886	n:10000
SCUBE3   10000 perm   2 sec   (5417 perm/sec)   p_kst 3.886000e-01   p_cons 3.211000e-01   p_joint 4.103000e-01

Outputting figure to mutsig2_images.part000000000153/SCUBE3.11_3070_10000_0.3886_0.3211_0.4103.png
                gene_name: SCUBE3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 21 percent done.
SDK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.794962e-02	ci left: 2.411415e-01	ci right 2.582045e-01	k: 2496	n:10000
Cons ci ratio: 1.071047e-02	ci left: 9.254425e-01	ci right 9.355050e-01	k: 9306	n:10000
KS ci ratio: 8.760919e-02	ci left: 1.594429e-01	ci right 1.741517e-01	k: 1667	n:10000
SDK2   10000 perm   2 sec   (4780 perm/sec)   p_kst 1.667000e-01   p_cons 9.306000e-01   p_joint 2.496000e-01

Outputting figure to mutsig2_images.part000000000153/SDK2.11_6699_10000_0.1667_0.9306_0.2496.png
                gene_name: SDK2
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 23 percent done.
SCUBE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.467681e-02	ci left: 3.301173e-01	ci right 3.487763e-01	k: 3394	n:10000
Cons ci ratio: 5.407281e-02	ci left: 3.350832e-01	ci right 3.538075e-01	k: 3444	n:10000
KS ci ratio: 6.342511e-02	ci left: 2.675518e-01	ci right 2.851786e-01	k: 2763	n:10000
SCUBE2   10000 perm   2 sec   (5490 perm/sec)   p_kst 2.763000e-01   p_cons 3.444000e-01   p_joint 3.394000e-01

Outputting figure to mutsig2_images.part000000000153/SCUBE2.10_3179_10000_0.2763_0.3444_0.3394.png
                gene_name: SCUBE2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 25 percent done.
SDCCAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.920006e-01	ci left: 7.963073e-03	ci right 1.193024e-02	k: 98	n:10000
Cons ci ratio: 3.986605e-02	ci left: 4.816553e-01	ci right 5.013497e-01	k: 4915	n:10000
KS ci ratio: 6.521239e-01	ci left: 2.439052e-03	ci right 4.864323e-03	k: 35	n:10000
SDCCAG1   10000 perm   2 sec   (5359 perm/sec)   p_kst 3.500000e-03   p_cons 4.915000e-01   p_joint 9.800000e-03

Joint ci ratio: 2.082928e-01	ci left: 1.558582e-02	ci right 1.925640e-02	k: 347	n:20000
Cons ci ratio: 2.848656e-02	ci left: 4.793505e-01	ci right 4.932535e-01	k: 9726	n:20000
KS ci ratio: 4.373811e-01	ci left: 3.128462e-03	ci right 4.920482e-03	k: 79	n:20000
SDCCAG1   20000 perm   4 sec   (4787 perm/sec)   p_kst 3.950000e-03   p_cons 4.863000e-01   p_joint 1.735000e-02

Joint ci ratio: 1.929815e-01	ci left: 1.225647e-02	ci right 1.490563e-02	k: 406	n:30000
Cons ci ratio: 2.324892e-02	ci left: 4.808623e-01	ci right 4.922070e-01	k: 14596	n:30000
KS ci ratio: 3.616908e-01	ci left: 3.196122e-03	ci right 4.635909e-03	k: 116	n:30000
SDCCAG1   30000 perm   7 sec   (4588 perm/sec)   p_kst 3.866667e-03   p_cons 4.865333e-01   p_joint 1.353333e-02

Joint ci ratio: 1.821157e-01	ci left: 1.040661e-02	ci right 1.251521e-02	k: 457	n:40000
Cons ci ratio: 2.019934e-02	ci left: 4.800161e-01	ci right 4.898361e-01	k: 19397	n:40000
KS ci ratio: 3.173454e-01	ci left: 3.197791e-03	ci right 4.425976e-03	k: 151	n:40000
SDCCAG1   40000 perm   9 sec   (4475 perm/sec)   p_kst 3.775000e-03   p_cons 4.849250e-01   p_joint 1.142500e-02

Joint ci ratio: 1.532293e-01	ci left: 1.192926e-02	ci right 1.392788e-02	k: 645	n:50000
Cons ci ratio: 1.803175e-02	ci left: 4.815101e-01	ci right 4.902916e-01	k: 24295	n:50000
KS ci ratio: 2.853546e-01	ci left: 3.223947e-03	ci right 4.314914e-03	k: 187	n:50000
SDCCAG1   50000 perm   11 sec   (4390 perm/sec)   p_kst 3.740000e-03   p_cons 4.859000e-01   p_joint 1.290000e-02

Joint ci ratio: 1.367153e-01	ci left: 1.259186e-02	ci right 1.445563e-02	k: 810	n:60000
Cons ci ratio: 1.649978e-02	ci left: 4.807103e-01	ci right 4.887245e-01	k: 29083	n:60000
KS ci ratio: 2.489076e-01	ci left: 3.604482e-03	ci right 4.644385e-03	k: 246	n:60000
SDCCAG1   60000 perm   14 sec   (4313 perm/sec)   p_kst 4.100000e-03   p_cons 4.847167e-01   p_joint 1.350000e-02

Joint ci ratio: 1.406717e-01	ci left: 1.019914e-02	ci right 1.175608e-02	k: 767	n:70000
Cons ci ratio: 1.530219e-02	ci left: 4.801487e-01	ci right 4.875669e-01	k: 33870	n:70000
KS ci ratio: 2.325467e-01	ci left: 3.572844e-03	ci right 4.526133e-03	k: 282	n:70000
SDCCAG1   70000 perm   16 sec   (4250 perm/sec)   p_kst 4.028571e-03   p_cons 4.838571e-01   p_joint 1.095714e-02

Joint ci ratio: 1.598342e-01	ci left: 6.865789e-03	ci right 8.070344e-03	k: 596	n:80000
Cons ci ratio: 1.434498e-02	ci left: 4.793067e-01	ci right 4.862445e-01	k: 38622	n:80000
KS ci ratio: 2.190385e-01	ci left: 3.550801e-03	ci right 4.435767e-03	k: 318	n:80000
SDCCAG1   80000 perm   19 sec   (4187 perm/sec)   p_kst 3.975000e-03   p_cons 4.827750e-01   p_joint 7.450000e-03

Joint ci ratio: 1.553799e-01	ci left: 6.476372e-03	ci right 7.577984e-03	k: 631	n:90000
Cons ci ratio: 1.352062e-02	ci left: 4.796526e-01	ci right 4.861930e-01	k: 43463	n:90000
KS ci ratio: 2.079344e-01	ci left: 3.524369e-03	ci right 4.352553e-03	k: 353	n:90000
SDCCAG1   90000 perm   22 sec   (4119 perm/sec)   p_kst 3.922222e-03   p_cons 4.829222e-01   p_joint 7.011111e-03

Joint ci ratio: 1.507076e-01	ci left: 6.213353e-03	ci right 7.235573e-03	k: 671	n:100000
Cons ci ratio: 1.282353e-02	ci left: 4.799483e-01	ci right 4.861526e-01	k: 48305	n:100000
KS ci ratio: 1.976005e-01	ci left: 3.532650e-03	ci right 4.316556e-03	k: 391	n:100000
SDCCAG1   100000 perm   25 sec   (4063 perm/sec)   p_kst 3.910000e-03   p_cons 4.830500e-01   p_joint 6.710000e-03

Joint ci ratio: 1.497483e-01	ci left: 5.727136e-03	ci right 6.662823e-03	k: 680	n:110000
Cons ci ratio: 1.221220e-02	ci left: 4.806882e-01	ci right 4.866036e-01	k: 53201	n:110000
KS ci ratio: 1.915982e-01	ci left: 3.427682e-03	ci right 4.162498e-03	k: 416	n:110000
SDCCAG1   110000 perm   27 sec   (4010 perm/sec)   p_kst 3.781818e-03   p_cons 4.836455e-01   p_joint 6.181818e-03

Joint ci ratio: 1.456502e-01	ci left: 5.562830e-03	ci right 6.444633e-03	k: 719	n:120000
Cons ci ratio: 1.168811e-02	ci left: 4.809938e-01	ci right 4.866570e-01	k: 58059	n:120000
KS ci ratio: 1.832209e-01	ci left: 3.451804e-03	ci right 4.155844e-03	k: 455	n:120000
SDCCAG1   120000 perm   30 sec   (3957 perm/sec)   p_kst 3.791667e-03   p_cons 4.838250e-01   p_joint 5.991667e-03

Joint ci ratio: 1.249393e-01	ci left: 7.045620e-03	ci right 7.991932e-03	k: 976	n:130000
Cons ci ratio: 1.123429e-02	ci left: 4.808954e-01	ci right 4.863361e-01	k: 62870	n:130000
KS ci ratio: 1.760330e-01	ci left: 3.465451e-03	ci right 4.141595e-03	k: 493	n:130000
SDCCAG1   130000 perm   33 sec   (3905 perm/sec)   p_kst 3.792308e-03   p_cons 4.836154e-01   p_joint 7.507692e-03

Joint ci ratio: 1.239551e-01	ci left: 6.653005e-03	ci right 7.539023e-03	k: 992	n:140000
Cons ci ratio: 1.082768e-02	ci left: 4.809005e-01	ci right 4.861430e-01	k: 67693	n:140000
KS ci ratio: 1.688352e-01	ci left: 3.511817e-03	ci right 4.166140e-03	k: 536	n:140000
SDCCAG1   140000 perm   36 sec   (3849 perm/sec)   p_kst 3.828571e-03   p_cons 4.835214e-01   p_joint 7.085714e-03

Joint ci ratio: 1.228074e-01	ci left: 6.332163e-03	ci right 7.167074e-03	k: 1011	n:150000
Cons ci ratio: 1.044829e-02	ci left: 4.815746e-01	ci right 4.866393e-01	k: 72616	n:150000
KS ci ratio: 1.618941e-01	ci left: 3.578075e-03	ci right 4.214671e-03	k: 583	n:150000
SDCCAG1   150000 perm   39 sec   (3800 perm/sec)   p_kst 3.886667e-03   p_cons 4.841067e-01   p_joint 6.740000e-03

Joint ci ratio: 1.206916e-01	ci left: 6.154516e-03	ci right 6.951023e-03	k: 1047	n:160000
Cons ci ratio: 1.010540e-02	ci left: 4.822046e-01	ci right 4.871084e-01	k: 77545	n:160000
KS ci ratio: 1.564930e-01	ci left: 3.600492e-03	ci right 4.217698e-03	k: 624	n:160000
SDCCAG1   160000 perm   43 sec   (3754 perm/sec)   p_kst 3.900000e-03   p_cons 4.846563e-01   p_joint 6.543750e-03

Joint ci ratio: 1.021140e-01	ci left: 8.155056e-03	ci right 9.038296e-03	k: 1460	n:170000
Cons ci ratio: 9.816686e-03	ci left: 4.816159e-01	ci right 4.863729e-01	k: 82279	n:170000
KS ci ratio: 1.514845e-01	ci left: 3.626242e-03	ci right 4.226164e-03	k: 666	n:170000
SDCCAG1   170000 perm   46 sec   (3705 perm/sec)   p_kst 3.917647e-03   p_cons 4.839941e-01   p_joint 8.588235e-03

Joint ci ratio: 1.014410e-01	ci left: 7.810209e-03	ci right 8.650189e-03	k: 1480	n:180000
Cons ci ratio: 9.541482e-03	ci left: 4.816111e-01	ci right 4.862339e-01	k: 87106	n:180000
KS ci ratio: 1.472411e-01	ci left: 3.633355e-03	ci right 4.216134e-03	k: 705	n:180000
SDCCAG1   180000 perm   49 sec   (3660 perm/sec)   p_kst 3.916667e-03   p_cons 4.839222e-01   p_joint 8.222222e-03

Joint ci ratio: 1.009491e-01	ci left: 7.476030e-03	ci right 8.275937e-03	k: 1495	n:190000
Cons ci ratio: 9.288784e-03	ci left: 4.815769e-01	ci right 4.860762e-01	k: 91927	n:190000
KS ci ratio: 1.434321e-01	ci left: 3.634854e-03	ci right 4.201500e-03	k: 743	n:190000
SDCCAG1   190000 perm   53 sec   (3608 perm/sec)   p_kst 3.910526e-03   p_cons 4.838263e-01   p_joint 7.868421e-03

Joint ci ratio: 9.832188e-02	ci left: 7.497140e-03	ci right 8.277225e-03	k: 1576	n:200000
Cons ci ratio: 9.049265e-03	ci left: 4.818726e-01	ci right 4.862579e-01	k: 96813	n:200000
KS ci ratio: 1.401744e-01	ci left: 3.621901e-03	ci right 4.172632e-03	k: 778	n:200000
SDCCAG1   200000 perm   56 sec   (3559 perm/sec)   p_kst 3.890000e-03   p_cons 4.840650e-01   p_joint 7.880000e-03

Joint ci ratio: 9.762572e-02	ci left: 7.246928e-03	ci right 7.995331e-03	k: 1599	n:210000
Cons ci ratio: 8.831910e-03	ci left: 4.818843e-01	ci right 4.861638e-01	k: 101645	n:210000
KS ci ratio: 1.374685e-01	ci left: 3.591918e-03	ci right 4.126683e-03	k: 809	n:210000
SDCCAG1   210000 perm   60 sec   (3515 perm/sec)   p_kst 3.852381e-03   p_cons 4.840238e-01   p_joint 7.614286e-03

Joint ci ratio: 9.788959e-02	ci left: 6.881984e-03	ci right 7.594728e-03	k: 1591	n:220000
Cons ci ratio: 8.633742e-03	ci left: 4.816506e-01	ci right 4.858316e-01	k: 106423	n:220000
KS ci ratio: 1.352367e-01	ci left: 3.547184e-03	ci right 4.066025e-03	k: 836	n:220000
SDCCAG1   220000 perm   63 sec   (3475 perm/sec)   p_kst 3.800000e-03   p_cons 4.837409e-01   p_joint 7.231818e-03

Joint ci ratio: 9.008594e-02	ci left: 7.797222e-03	ci right 8.536993e-03	k: 1877	n:230000
Cons ci ratio: 8.441060e-03	ci left: 4.818687e-01	ci right 4.859578e-01	k: 111300	n:230000
KS ci ratio: 1.321161e-01	ci left: 3.561057e-03	ci right 4.068965e-03	k: 876	n:230000
SDCCAG1   230000 perm   67 sec   (3436 perm/sec)   p_kst 3.808696e-03   p_cons 4.839130e-01   p_joint 8.160870e-03

Joint ci ratio: 9.573403e-02	ci left: 6.605243e-03	ci right 7.273415e-03	k: 1664	n:240000
Cons ci ratio: 8.267344e-03	ci left: 4.816696e-01	ci right 4.856724e-01	k: 116081	n:240000
KS ci ratio: 1.280851e-01	ci left: 3.638429e-03	ci right 4.140336e-03	k: 932	n:240000
SDCCAG1   240000 perm   71 sec   (3397 perm/sec)   p_kst 3.883333e-03   p_cons 4.836708e-01   p_joint 6.933333e-03

Joint ci ratio: 9.480614e-02	ci left: 6.469866e-03	ci right 7.117648e-03	k: 1697	n:250000
Cons ci ratio: 8.099255e-03	ci left: 4.817753e-01	ci right 4.856971e-01	k: 120934	n:250000
KS ci ratio: 1.255540e-01	ci left: 3.640070e-03	ci right 4.131542e-03	k: 970	n:250000
SDCCAG1   250000 perm   74 sec   (3358 perm/sec)   p_kst 3.880000e-03   p_cons 4.837360e-01   p_joint 6.788000e-03

Joint ci ratio: 9.341673e-02	ci left: 6.412553e-03	ci right 7.044672e-03	k: 1748	n:260000
Cons ci ratio: 7.942180e-03	ci left: 4.818005e-01	ci right 4.856461e-01	k: 125768	n:260000
KS ci ratio: 1.233515e-01	ci left: 3.630491e-03	ci right 4.111442e-03	k: 1005	n:260000
SDCCAG1   260000 perm   78 sec   (3321 perm/sec)   p_kst 3.865385e-03   p_cons 4.837231e-01   p_joint 6.723077e-03

Joint ci ratio: 9.172819e-02	ci left: 6.410218e-03	ci right 7.030071e-03	k: 1813	n:270000
Cons ci ratio: 7.791303e-03	ci left: 4.819911e-01	ci right 4.857648e-01	k: 130647	n:270000
KS ci ratio: 1.210860e-01	ci left: 3.632466e-03	ci right 4.104208e-03	k: 1043	n:270000
SDCCAG1   270000 perm   82 sec   (3284 perm/sec)   p_kst 3.862963e-03   p_cons 4.838778e-01   p_joint 6.714815e-03

Joint ci ratio: 9.595590e-02	ci left: 5.640587e-03	ci right 6.212569e-03	k: 1658	n:280000
Cons ci ratio: 7.645320e-03	ci left: 4.823902e-01	ci right 4.860959e-01	k: 135588	n:280000
KS ci ratio: 1.196085e-01	ci left: 3.592793e-03	ci right 4.053285e-03	k: 1069	n:280000
SDCCAG1   280000 perm   86 sec   (3245 perm/sec)   p_kst 3.817857e-03   p_cons 4.842429e-01   p_joint 5.921429e-03

Joint ci ratio: 9.518980e-02	ci left: 5.536948e-03	ci right 6.093687e-03	k: 1685	n:290000
Cons ci ratio: 7.512267e-03	ci left: 4.824278e-01	ci right 4.860690e-01	k: 140432	n:290000
KS ci ratio: 1.180217e-01	ci left: 3.565928e-03	ci right 4.016491e-03	k: 1098	n:290000
SDCCAG1   290000 perm   90 sec   (3209 perm/sec)   p_kst 3.786207e-03   p_cons 4.842483e-01   p_joint 5.810345e-03

Joint ci ratio: 9.289958e-02	ci left: 5.625810e-03	ci right 6.177134e-03	k: 1769	n:300000
Cons ci ratio: 7.385928e-03	ci left: 4.824635e-01	ci right 4.860435e-01	k: 145276	n:300000
KS ci ratio: 1.214015e-01	ci left: 3.253020e-03	ci right 3.676662e-03	k: 1038	n:300000
SDCCAG1   300000 perm   95 sec   (3174 perm/sec)   p_kst 3.460000e-03   p_cons 4.842533e-01   p_joint 5.896667e-03

Joint ci ratio: 9.256720e-02	ci left: 5.485276e-03	ci right 6.020801e-03	k: 1782	n:310000
Cons ci ratio: 7.271295e-03	ci left: 4.821168e-01	ci right 4.856384e-01	k: 150002	n:310000
KS ci ratio: 1.192955e-01	ci left: 3.263846e-03	ci right 3.681005e-03	k: 1075	n:310000
SDCCAG1   310000 perm   99 sec   (3134 perm/sec)   p_kst 3.467742e-03   p_cons 4.838774e-01   p_joint 5.748387e-03

Joint ci ratio: 8.554765e-02	ci left: 6.239778e-03	ci right 6.800465e-03	k: 2085	n:320000
Cons ci ratio: 7.158786e-03	ci left: 4.820046e-01	ci right 4.854707e-01	k: 154796	n:320000
KS ci ratio: 1.174544e-01	ci left: 3.264955e-03	ci right 3.675368e-03	k: 1109	n:320000
SDCCAG1   320000 perm   103 sec   (3101 perm/sec)   p_kst 3.465625e-03   p_cons 4.837375e-01   p_joint 6.515625e-03

Joint ci ratio: 8.141655e-02	ci left: 6.691643e-03	ci right 7.262521e-03	k: 2301	n:330000
Cons ci ratio: 7.051726e-03	ci left: 4.818724e-01	ci right 4.852855e-01	k: 159581	n:330000
KS ci ratio: 1.152922e-01	ci left: 3.289588e-03	ci right 3.694966e-03	k: 1151	n:330000
SDCCAG1   330000 perm   108 sec   (3069 perm/sec)   p_kst 3.487879e-03   p_cons 4.835788e-01   p_joint 6.972727e-03

Joint ci ratio: 8.051440e-02	ci left: 6.644668e-03	ci right 7.204962e-03	k: 2353	n:340000
Cons ci ratio: 6.947611e-03	ci left: 4.818719e-01	ci right 4.852343e-01	k: 164408	n:340000
KS ci ratio: 1.139657e-01	ci left: 3.269968e-03	ci right 3.667981e-03	k: 1178	n:340000
SDCCAG1   340000 perm   112 sec   (3039 perm/sec)   p_kst 3.464706e-03   p_cons 4.835529e-01   p_joint 6.920588e-03

Joint ci ratio: 7.950857e-02	ci left: 6.622816e-03	ci right 7.173967e-03	k: 2413	n:350000
Cons ci ratio: 6.846213e-03	ci left: 4.820003e-01	ci right 4.853143e-01	k: 169280	n:350000
KS ci ratio: 1.123108e-01	ci left: 3.273711e-03	ci right 3.666010e-03	k: 1213	n:350000
SDCCAG1   350000 perm   116 sec   (3009 perm/sec)   p_kst 3.465714e-03   p_cons 4.836571e-01   p_joint 6.894286e-03

Joint ci ratio: 8.054722e-02	ci left: 6.272750e-03	ci right 6.801907e-03	k: 2352	n:360000
Cons ci ratio: 6.748452e-03	ci left: 4.821719e-01	ci right 4.854395e-01	k: 174170	n:360000
KS ci ratio: 1.106815e-01	ci left: 3.279986e-03	ci right 3.666963e-03	k: 1249	n:360000
SDCCAG1   360000 perm   121 sec   (2979 perm/sec)   p_kst 3.469444e-03   p_cons 4.838056e-01   p_joint 6.533333e-03

Joint ci ratio: 8.022904e-02	ci left: 6.153520e-03	ci right 6.670472e-03	k: 2371	n:370000
Cons ci ratio: 6.656743e-03	ci left: 4.821858e-01	ci right 4.854090e-01	k: 179005	n:370000
KS ci ratio: 1.092919e-01	ci left: 3.275445e-03	ci right 3.656721e-03	k: 1281	n:370000
SDCCAG1   370000 perm   125 sec   (2950 perm/sec)   p_kst 3.462162e-03   p_cons 4.837973e-01   p_joint 6.408108e-03

Joint ci ratio: 7.974676e-02	ci left: 6.066364e-03	ci right 6.572788e-03	k: 2400	n:380000
Cons ci ratio: 6.562793e-03	ci left: 4.826467e-01	ci right 4.858272e-01	k: 184010	n:380000
KS ci ratio: 1.075841e-01	ci left: 3.294219e-03	ci right 3.671310e-03	k: 1322	n:380000
SDCCAG1   380000 perm   130 sec   (2921 perm/sec)   p_kst 3.478947e-03   p_cons 4.842368e-01   p_joint 6.315789e-03

Joint ci ratio: 7.717550e-02	ci left: 6.318083e-03	ci right 6.827751e-03	k: 2562	n:390000
Cons ci ratio: 6.479718e-03	ci left: 4.825432e-01	ci right 4.856827e-01	k: 188804	n:390000
KS ci ratio: 1.063066e-01	ci left: 3.289608e-03	ci right 3.661419e-03	k: 1354	n:390000
SDCCAG1   390000 perm   135 sec   (2891 perm/sec)   p_kst 3.471795e-03   p_cons 4.841128e-01   p_joint 6.569231e-03

Joint ci ratio: 7.700067e-02	ci left: 6.189537e-03	ci right 6.687654e-03	k: 2574	n:400000
Cons ci ratio: 6.398085e-03	ci left: 4.825727e-01	ci right 4.856726e-01	k: 193649	n:400000
KS ci ratio: 1.045079e-01	ci left: 3.321773e-03	ci right 3.690477e-03	k: 1401	n:400000
SDCCAG1   400000 perm   140 sec   (2863 perm/sec)   p_kst 3.502500e-03   p_cons 4.841225e-01   p_joint 6.435000e-03

Joint ci ratio: 8.284051e-02	ci left: 5.206621e-03	ci right 5.658948e-03	k: 2226	n:410000
Cons ci ratio: 6.321345e-03	ci left: 4.824521e-01	ci right 4.855139e-01	k: 198433	n:410000
KS ci ratio: 1.035533e-01	ci left: 3.302517e-03	ci right 3.665532e-03	k: 1427	n:410000
SDCCAG1   410000 perm   145 sec   (2836 perm/sec)   p_kst 3.480488e-03   p_cons 4.839829e-01   p_joint 5.429268e-03

Joint ci ratio: 8.299589e-02	ci left: 5.063986e-03	ci right 5.504786e-03	k: 2218	n:420000
Cons ci ratio: 6.245752e-03	ci left: 4.824614e-01	ci right 4.854865e-01	k: 203269	n:420000
KS ci ratio: 1.019927e-01	ci left: 3.325957e-03	ci right 3.685709e-03	k: 1471	n:420000
SDCCAG1   420000 perm   150 sec   (2804 perm/sec)   p_kst 3.502381e-03   p_cons 4.839738e-01   p_joint 5.280952e-03

Joint ci ratio: 7.146297e-02	ci left: 6.700429e-03	ci right 7.199273e-03	k: 2987	n:430000
Cons ci ratio: 6.172406e-03	ci left: 4.825029e-01	ci right 4.854926e-01	k: 208119	n:430000
KS ci ratio: 1.007009e-01	ci left: 3.334742e-03	ci right 3.690605e-03	k: 1509	n:430000
SDCCAG1   430000 perm   155 sec   (2776 perm/sec)   p_kst 3.509302e-03   p_cons 4.839977e-01   p_joint 6.946512e-03

Joint ci ratio: 7.209071e-02	ci left: 6.434286e-03	ci right 6.917699e-03	k: 2936	n:440000
Cons ci ratio: 6.104861e-03	ci left: 4.822746e-01	ci right 4.852301e-01	k: 212851	n:440000
KS ci ratio: 9.955372e-02	ci left: 3.336506e-03	ci right 3.688264e-03	k: 1544	n:440000
SDCCAG1   440000 perm   160 sec   (2749 perm/sec)   p_kst 3.509091e-03   p_cons 4.837523e-01   p_joint 6.672727e-03

Outputting figure to mutsig2_images.part000000000153/SDCCAG1.10_3363_440000_0.0035091_0.48375_0.0066727.png
                gene_name: SDCCAG1
               theta_stop: 0.100 
                    nperm: 440000 
                     p_ks: 0.0035 
        ci_ks_bounds_left: 0.0033 
       ci_ks_bounds_right: 0.0037 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.0067 
     ci_joint_bounds_left: 0.0064 
    ci_joint_bounds_right: 0.0069 

Current progress: 26 percent done.
SCFD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.798932e-02	ci left: 1.582644e-01	ci right 1.729310e-01	k: 1655	n:10000
Cons ci ratio: 7.398202e-02	ci left: 2.110256e-01	ci right 2.273383e-01	k: 2191	n:10000
KS ci ratio: 9.926549e-02	ci left: 1.281636e-01	ci right 1.416499e-01	k: 1348	n:10000
SCFD2   10000 perm   2 sec   (5624 perm/sec)   p_kst 1.348000e-01   p_cons 2.191000e-01   p_joint 1.655000e-01

Outputting figure to mutsig2_images.part000000000153/SCFD2.7_2091_10000_0.1348_0.2191_0.1655.png
                gene_name: SCFD2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 28 percent done.
SCLT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.532587e-02	ci left: 2.050098e-01	ci right 2.211576e-01	k: 2130	n:10000
Cons ci ratio: 9.747717e-02	ci left: 1.323733e-01	ci right 1.460376e-01	k: 1391	n:10000
KS ci ratio: 6.231794e-02	ci left: 2.745815e-01	ci right 2.923448e-01	k: 2834	n:10000
SCLT1   10000 perm   2 sec   (6191 perm/sec)   p_kst 2.834000e-01   p_cons 1.391000e-01   p_joint 2.130000e-01

Outputting figure to mutsig2_images.part000000000153/SCLT1.7_2151_10000_0.2834_0.1391_0.213.png
                gene_name: SCLT1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 30 percent done.
SCML2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.834238e-02	ci left: 8.127337e-01	ci right 8.278793e-01	k: 8204	n:10000
Cons ci ratio: 1.809928e-02	ci left: 8.166970e-01	ci right 8.317137e-01	k: 8243	n:10000
KS ci ratio: 3.725901e-02	ci left: 5.154566e-01	ci right 5.351287e-01	k: 5253	n:10000
SCML2   10000 perm   2 sec   (5781 perm/sec)   p_kst 5.253000e-01   p_cons 8.243000e-01   p_joint 8.204000e-01

Outputting figure to mutsig2_images.part000000000153/SCML2.7_2159_10000_0.5253_0.8243_0.8204.png
                gene_name: SCML2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 32 percent done.
SCML4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.605153e-02	ci left: 5.318734e-01	ci right 5.515023e-01	k: 5417	n:10000
Cons ci ratio: 1.809304e-02	ci left: 8.167986e-01	ci right 8.318120e-01	k: 8244	n:10000
KS ci ratio: 6.086234e-02	ci left: 2.841899e-01	ci right 3.021308e-01	k: 2931	n:10000
SCML4   10000 perm   2 sec   (6551 perm/sec)   p_kst 2.931000e-01   p_cons 8.244000e-01   p_joint 5.417000e-01

Outputting figure to mutsig2_images.part000000000153/SCML4.7_1273_10000_0.2931_0.8244_0.5417.png
                gene_name: SCML4
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 34 percent done.
SCARA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.665833e-02	ci left: 5.235635e-01	ci right 5.432170e-01	k: 5334	n:10000
KS ci ratio: 1.632061e-02	ci left: 8.451935e-01	ci right 8.592007e-01	k: 8523	n:10000
SCARA5   10000 perm   2 sec   (6501 perm/sec)   p_kst 8.523000e-01   p_cons 5.334000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SCARA5.6_1520_10000_0.8523_0.5334_1.png
                gene_name: SCARA5
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
SCEL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.292493e-02	ci left: 8.960051e-01	ci right 9.077596e-01	k: 9020	n:10000
Cons ci ratio: 2.857317e-02	ci left: 6.435768e-01	ci right 6.623341e-01	k: 6530	n:10000
KS ci ratio: 2.474777e-02	ci left: 7.060407e-01	ci right 7.238339e-01	k: 7150	n:10000
SCEL   10000 perm   2 sec   (6202 perm/sec)   p_kst 7.150000e-01   p_cons 6.530000e-01   p_joint 9.020000e-01

Outputting figure to mutsig2_images.part000000000153/SCEL.6_2195_10000_0.715_0.653_0.902.png
                gene_name: SCEL
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 38 percent done.
SCG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.466295e-02	ci left: 8.707094e-01	ci right 8.836699e-01	k: 8773	n:10000
KS ci ratio: 1.896174e-02	ci left: 8.025773e-01	ci right 8.180415e-01	k: 8104	n:10000
SCG2   10000 perm   2 sec   (6414 perm/sec)   p_kst 8.104000e-01   p_cons 8.773000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SCG2.6_1858_10000_0.8104_0.8773_1.png
                gene_name: SCG2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
SCN8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.995523e-02	ci left: 7.861410e-01	ci right 8.020873e-01	k: 7942	n:10000
Cons ci ratio: 3.351152e-02	ci left: 5.679478e-01	ci right 5.874070e-01	k: 5777	n:10000
KS ci ratio: 3.683541e-02	ci left: 5.211612e-01	ci right 5.408207e-01	k: 5310	n:10000
SCN8A   10000 perm   2 sec   (4981 perm/sec)   p_kst 5.310000e-01   p_cons 5.777000e-01   p_joint 7.942000e-01

Outputting figure to mutsig2_images.part000000000153/SCN8A.6_6047_10000_0.531_0.5777_0.7942.png
                gene_name: SCN8A
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 42 percent done.
SCYL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.856484e-02	ci left: 3.002475e-01	ci right 3.184636e-01	k: 3093	n:10000
Cons ci ratio: 7.738372e-02	ci left: 1.962376e-01	ci right 2.121351e-01	k: 2041	n:10000
KS ci ratio: 4.336488e-02	ci left: 4.398160e-01	ci right 4.594134e-01	k: 4496	n:10000
SCYL3   10000 perm   2 sec   (5864 perm/sec)   p_kst 4.496000e-01   p_cons 2.041000e-01   p_joint 3.093000e-01

Outputting figure to mutsig2_images.part000000000153/SCYL3.6_2281_10000_0.4496_0.2041_0.3093.png
                gene_name: SCYL3
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 43 percent done.
SDHA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.374371e-02	ci left: 2.655721e-01	ci right 2.831595e-01	k: 2743	n:10000
Cons ci ratio: 8.041364e-02	ci left: 1.842223e-01	ci right 1.997575e-01	k: 1919	n:10000
KS ci ratio: 4.863654e-02	ci left: 3.841063e-01	ci right 4.033556e-01	k: 3937	n:10000
SDHA   10000 perm   2 sec   (6251 perm/sec)   p_kst 3.937000e-01   p_cons 1.919000e-01   p_joint 2.743000e-01

Outputting figure to mutsig2_images.part000000000153/SDHA.6_2055_10000_0.3937_0.1919_0.2743.png
                gene_name: SDHA
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 45 percent done.
SCGN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.426881e-02	ci left: 7.140138e-01	ci right 7.316562e-01	k: 7229	n:10000
Cons ci ratio: 3.591382e-02	ci left: 5.337760e-01	ci right 5.533986e-01	k: 5436	n:10000
KS ci ratio: 3.360775e-02	ci left: 5.665439e-01	ci right 5.860116e-01	k: 5763	n:10000
SCGN   10000 perm   2 sec   (6189 perm/sec)   p_kst 5.763000e-01   p_cons 5.436000e-01   p_joint 7.229000e-01

Outputting figure to mutsig2_images.part000000000153/SCGN.5_875_10000_0.5763_0.5436_0.7229.png
                gene_name: SCGN
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 47 percent done.
SCNN1G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.969142e-02	ci left: 6.258780e-01	ci right 6.448431e-01	k: 6354	n:10000
Cons ci ratio: 3.861839e-02	ci left: 4.975503e-01	ci right 5.172454e-01	k: 5074	n:10000
KS ci ratio: 5.086757e-02	ci left: 3.630124e-01	ci right 3.820619e-01	k: 3725	n:10000
SCNN1G   10000 perm   2 sec   (6640 perm/sec)   p_kst 3.725000e-01   p_cons 5.074000e-01   p_joint 6.354000e-01

Outputting figure to mutsig2_images.part000000000153/SCNN1G.5_1998_10000_0.3725_0.5074_0.6354.png
                gene_name: SCNN1G
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 49 percent done.
SCARB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.996985e-02	ci left: 4.803561e-01	ci right 5.000496e-01	k: 4902	n:10000
Cons ci ratio: 2.191967e-02	ci left: 7.533254e-01	ci right 7.701219e-01	k: 7618	n:10000
KS ci ratio: 4.300748e-02	ci left: 4.439070e-01	ci right 4.635200e-01	k: 4537	n:10000
SCARB2   10000 perm   1 sec   (6960 perm/sec)   p_kst 4.537000e-01   p_cons 7.618000e-01   p_joint 4.902000e-01

Outputting figure to mutsig2_images.part000000000153/SCARB2.4_1485_10000_0.4537_0.7618_0.4902.png
                gene_name: SCARB2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 51 percent done.
SCFD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.052633e-02	ci left: 2.864688e-01	ci right 3.044505e-01	k: 2954	n:10000
Cons ci ratio: 7.072525e-02	ci left: 2.266191e-01	ci right 2.433355e-01	k: 2349	n:10000
KS ci ratio: 6.409772e-02	ci left: 2.633947e-01	ci right 2.809382e-01	k: 2721	n:10000
SCFD1   10000 perm   2 sec   (6166 perm/sec)   p_kst 2.721000e-01   p_cons 2.349000e-01   p_joint 2.954000e-01

Outputting figure to mutsig2_images.part000000000153/SCFD1.4_2029_10000_0.2721_0.2349_0.2954.png
                gene_name: SCFD1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 53 percent done.
SCHIP1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.195989e-01	ci left: 9.117000e-02	ci right 1.028660e-01	k: 969	n:10000
Cons ci ratio: 3.582708e-02	ci left: 5.349777e-01	ci right 5.545962e-01	k: 5448	n:10000
KS ci ratio: 1.512986e-01	ci left: 5.812294e-02	ci right 6.773362e-02	k: 628	n:10000
SCHIP1   10000 perm   1 sec   (7052 perm/sec)   p_kst 6.280000e-02   p_cons 5.448000e-01   p_joint 9.690000e-02

Joint ci ratio: 9.783690e-02	ci left: 7.065356e-02	ci right 7.797078e-02	k: 1485	n:20000
Cons ci ratio: 2.494947e-02	ci left: 5.454764e-01	ci right 5.593083e-01	k: 11048	n:20000
KS ci ratio: 1.093238e-01	ci left: 5.708878e-02	ci right 6.373973e-02	k: 1207	n:20000
SCHIP1   20000 perm   3 sec   (6216 perm/sec)   p_kst 6.035000e-02   p_cons 5.524000e-01   p_joint 7.425000e-02

Joint ci ratio: 8.574176e-02	ci left: 6.233390e-02	ci right 6.795067e-02	k: 1953	n:30000
Cons ci ratio: 2.039082e-02	ci left: 5.462845e-01	ci right 5.575721e-01	k: 16558	n:30000
KS ci ratio: 8.876887e-02	ci left: 5.831772e-02	ci right 6.376768e-02	k: 1830	n:30000
SCHIP1   30000 perm   5 sec   (5927 perm/sec)   p_kst 6.100000e-02   p_cons 5.519333e-01   p_joint 6.510000e-02

Outputting figure to mutsig2_images.part000000000153/SCHIP1.3_1496_30000_0.061_0.55193_0.0651.png
                gene_name: SCHIP1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.068 

Current progress: 55 percent done.
SCNN1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.355961e-02	ci left: 5.672458e-01	ci right 5.867093e-01	k: 5770	n:10000
Cons ci ratio: 7.519138e-02	ci left: 2.056014e-01	ci right 2.217657e-01	k: 2136	n:10000
KS ci ratio: 2.120044e-02	ci left: 7.653697e-01	ci right 7.818706e-01	k: 7737	n:10000
SCNN1B   10000 perm   2 sec   (6417 perm/sec)   p_kst 7.737000e-01   p_cons 2.136000e-01   p_joint 5.770000e-01

Outputting figure to mutsig2_images.part000000000153/SCNN1B.4_1971_10000_0.7737_0.2136_0.577.png
                gene_name: SCNN1B
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 57 percent done.
SCYL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.497695e-03	ci left: 9.846908e-01	ci right 9.892189e-01	k: 9871	n:10000
Cons ci ratio: 2.725432e-02	ci left: 6.648137e-01	ci right 6.832848e-01	k: 6741	n:10000
KS ci ratio: 2.428092e-02	ci left: 7.138119e-01	ci right 7.314582e-01	k: 7227	n:10000
SCYL2   10000 perm   2 sec   (6033 perm/sec)   p_kst 7.227000e-01   p_cons 6.741000e-01   p_joint 9.871000e-01

Outputting figure to mutsig2_images.part000000000153/SCYL2.4_2858_10000_0.7227_0.6741_0.9871.png
                gene_name: SCYL2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 58 percent done.
SCD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.460375e-02	ci left: 3.307132e-01	ci right 3.493801e-01	k: 3400	n:10000
Cons ci ratio: 4.115543e-02	ci left: 4.657702e-01	ci right 4.854441e-01	k: 4756	n:10000
KS ci ratio: 5.599475e-02	ci left: 3.195935e-01	ci right 3.381063e-01	k: 3288	n:10000
SCD5   10000 perm   1 sec   (6995 perm/sec)   p_kst 3.288000e-01   p_cons 4.756000e-01   p_joint 3.400000e-01

Outputting figure to mutsig2_images.part000000000153/SCD5.3_1219_10000_0.3288_0.4756_0.34.png
                gene_name: SCD5
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 60 percent done.
SCG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.391093e-02	ci left: 8.818604e-01	ci right 8.943125e-01	k: 8882	n:10000
Cons ci ratio: 3.554632e-02	ci left: 5.388838e-01	ci right 5.584878e-01	k: 5487	n:10000
KS ci ratio: 8.770970e-03	ci left: 9.480432e-01	ci right 9.564908e-01	k: 9524	n:10000
SCG3   10000 perm   1 sec   (6980 perm/sec)   p_kst 9.524000e-01   p_cons 5.487000e-01   p_joint 8.882000e-01

Outputting figure to mutsig2_images.part000000000153/SCG3.3_1455_10000_0.9524_0.5487_0.8882.png
                gene_name: SCG3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 62 percent done.
SCIN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.391215e-02	ci left: 4.336308e-01	ci right 4.532021e-01	k: 4434	n:10000
KS ci ratio: 2.724812e-02	ci left: 6.649144e-01	ci right 6.833840e-01	k: 6742	n:10000
SCIN   10000 perm   1 sec   (6709 perm/sec)   p_kst 6.742000e-01   p_cons 4.434000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SCIN.3_2212_10000_0.6742_0.4434_1.png
                gene_name: SCIN
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
SCMH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.882037e-02	ci left: 3.823146e-01	ci right 4.015484e-01	k: 3919	n:10000
Cons ci ratio: 6.424362e-02	ci left: 2.625040e-01	ci right 2.800294e-01	k: 2712	n:10000
KS ci ratio: 4.695702e-02	ci left: 4.009353e-01	ci right 4.203168e-01	k: 4106	n:10000
SCMH1   10000 perm   2 sec   (6656 perm/sec)   p_kst 4.106000e-01   p_cons 2.712000e-01   p_joint 3.919000e-01

Outputting figure to mutsig2_images.part000000000153/SCMH1.3_2163_10000_0.4106_0.2712_0.3919.png
                gene_name: SCMH1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 66 percent done.
SCN2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.953784e-02	ci left: 6.282906e-01	ci right 6.472290e-01	k: 6378	n:10000
Cons ci ratio: 4.587792e-02	ci left: 4.121944e-01	ci right 4.316511e-01	k: 4219	n:10000
KS ci ratio: 3.924902e-02	ci left: 4.894516e-01	ci right 5.091488e-01	k: 4993	n:10000
SCN2B   10000 perm   1 sec   (7286 perm/sec)   p_kst 4.993000e-01   p_cons 4.219000e-01   p_joint 6.378000e-01

Outputting figure to mutsig2_images.part000000000153/SCN2B.3_664_10000_0.4993_0.4219_0.6378.png
                gene_name: SCN2B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 68 percent done.
SCNN1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.285168e-02	ci left: 4.457032e-01	ci right 4.653227e-01	k: 4555	n:10000
Cons ci ratio: 4.055801e-02	ci left: 4.730621e-01	ci right 4.927479e-01	k: 4829	n:10000
KS ci ratio: 1.189212e-01	ci left: 9.214310e-02	ci right 1.038923e-01	k: 979	n:10000
SCNN1A   10000 perm   1 sec   (6671 perm/sec)   p_kst 9.790000e-02   p_cons 4.829000e-01   p_joint 4.555000e-01

Joint ci ratio: 4.917686e-02	ci left: 2.351352e-01	ci right 2.470402e-01	k: 4821	n:20000
Cons ci ratio: 2.791956e-02	ci left: 4.893966e-01	ci right 5.033044e-01	k: 9927	n:20000
KS ci ratio: 8.466752e-02	ci left: 9.268686e-02	ci right 1.009308e-01	k: 1935	n:20000
SCNN1A   20000 perm   3 sec   (5938 perm/sec)   p_kst 9.675000e-02   p_cons 4.963500e-01   p_joint 2.410500e-01

Outputting figure to mutsig2_images.part000000000153/SCNN1A.3_2254_20000_0.09675_0.49635_0.24105.png
                gene_name: SCNN1A
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 70 percent done.
SCP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.158746e-02	ci left: 7.588910e-01	ci right 7.755531e-01	k: 7673	n:10000
KS ci ratio: 1.492718e-02	ci left: 8.667238e-01	ci right 8.798579e-01	k: 8734	n:10000
SCP2   10000 perm   1 sec   (7307 perm/sec)   p_kst 8.734000e-01   p_cons 7.673000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SCP2.3_1732_10000_0.8734_0.7673_1.png
                gene_name: SCP2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
SCPEP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.180359e-02	ci left: 5.933315e-01	ci right 6.126085e-01	k: 6030	n:10000
Cons ci ratio: 4.715155e-02	ci left: 3.989431e-01	ci right 4.183102e-01	k: 4086	n:10000
KS ci ratio: 2.524631e-02	ci left: 6.977684e-01	ci right 7.157111e-01	k: 7068	n:10000
SCPEP1   10000 perm   1 sec   (6938 perm/sec)   p_kst 7.068000e-01   p_cons 4.086000e-01   p_joint 6.030000e-01

Outputting figure to mutsig2_images.part000000000153/SCPEP1.3_1411_10000_0.7068_0.4086_0.603.png
                gene_name: SCPEP1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 74 percent done.
SCTR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.108126e-02	ci left: 4.666691e-01	ci right 4.863446e-01	k: 4765	n:10000
Cons ci ratio: 3.145295e-03	ci left: 9.919467e-01	ci right 9.951556e-01	k: 9937	n:10000
KS ci ratio: 6.567074e-02	ci left: 2.539954e-01	ci right 2.713431e-01	k: 2626	n:10000
SCTR   10000 perm   1 sec   (6946 perm/sec)   p_kst 2.626000e-01   p_cons 9.937000e-01   p_joint 4.765000e-01

Outputting figure to mutsig2_images.part000000000153/SCTR.3_1375_10000_0.2626_0.9937_0.4765.png
                gene_name: SCTR
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 75 percent done.
SCUBE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.255174e-02	ci left: 3.479998e-01	ci right 3.668833e-01	k: 3574	n:10000
Cons ci ratio: 5.045670e-02	ci left: 3.667920e-01	ci right 3.858801e-01	k: 3763	n:10000
KS ci ratio: 4.820135e-02	ci left: 3.883871e-01	ci right 4.076723e-01	k: 3980	n:10000
SCUBE1   10000 perm   2 sec   (6339 perm/sec)   p_kst 3.980000e-01   p_cons 3.763000e-01   p_joint 3.574000e-01

Outputting figure to mutsig2_images.part000000000153/SCUBE1.3_3055_10000_0.398_0.3763_0.3574.png
                gene_name: SCUBE1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 77 percent done.
SCYL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.009309e-02	ci left: 2.894418e-01	ci right 3.074757e-01	k: 2984	n:10000
Cons ci ratio: 6.161973e-02	ci left: 2.791374e-01	ci right 2.969862e-01	k: 2880	n:10000
KS ci ratio: 6.689629e-02	ci left: 2.469740e-01	ci right 2.641687e-01	k: 2555	n:10000
SCYL1   10000 perm   1 sec   (6678 perm/sec)   p_kst 2.555000e-01   p_cons 2.880000e-01   p_joint 2.984000e-01

Outputting figure to mutsig2_images.part000000000153/SCYL1.3_2499_10000_0.2555_0.288_0.2984.png
                gene_name: SCYL1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 79 percent done.
SDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.590211e-03	ci left: 9.388977e-01	ci right 9.480418e-01	k: 9436	n:10000
Cons ci ratio: 4.268795e-02	ci left: 4.475994e-01	ci right 4.672254e-01	k: 4574	n:10000
KS ci ratio: 2.924448e-02	ci left: 6.329156e-01	ci right 6.518014e-01	k: 6424	n:10000
SDC2   10000 perm   1 sec   (7647 perm/sec)   p_kst 6.424000e-01   p_cons 4.574000e-01   p_joint 9.436000e-01

Outputting figure to mutsig2_images.part000000000153/SDC2.3_626_10000_0.6424_0.4574_0.9436.png
                gene_name: SDC2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 81 percent done.
SDC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.117840e-01	ci left: 1.033465e-01	ci right 1.156820e-01	k: 1094	n:10000
Cons ci ratio: 1.528606e-01	ci left: 5.696592e-02	ci right 6.649137e-02	k: 616	n:10000
KS ci ratio: 7.827576e-02	ci left: 1.925924e-01	ci right 2.083825e-01	k: 2004	n:10000
SDC3   10000 perm   1 sec   (6915 perm/sec)   p_kst 2.004000e-01   p_cons 6.160000e-02   p_joint 1.094000e-01

Joint ci ratio: 1.286660e-01	ci left: 4.148978e-02	ci right 4.724363e-02	k: 886	n:20000
Cons ci ratio: 1.080444e-01	ci left: 5.840428e-02	ci right 6.512383e-02	k: 1234	n:20000
KS ci ratio: 5.549718e-02	ci left: 1.940795e-01	ci right 2.052079e-01	k: 3992	n:20000
SDC3   20000 perm   3 sec   (6112 perm/sec)   p_kst 1.996000e-01   p_cons 6.170000e-02   p_joint 4.430000e-02

Joint ci ratio: 1.175088e-01	ci left: 3.366123e-02	ci right 3.789596e-02	k: 1072	n:30000
Cons ci ratio: 8.407404e-02	ci left: 6.471901e-02	ci right 7.043175e-02	k: 2026	n:30000
KS ci ratio: 4.530636e-02	ci left: 1.951557e-01	ci right 2.042358e-01	k: 5990	n:30000
SDC3   30000 perm   5 sec   (5866 perm/sec)   p_kst 1.996667e-01   p_cons 6.753333e-02   p_joint 3.573333e-02

Joint ci ratio: 8.377118e-02	ci left: 4.972174e-02	ci right 5.409360e-02	k: 2075	n:40000
Cons ci ratio: 7.280570e-02	ci left: 6.510948e-02	ci right 7.005353e-02	k: 2702	n:40000
KS ci ratio: 3.913251e-02	ci left: 1.966106e-01	ci right 2.044830e-01	k: 8021	n:40000
SDC3   40000 perm   7 sec   (5714 perm/sec)   p_kst 2.005250e-01   p_cons 6.755000e-02   p_joint 5.187500e-02

Outputting figure to mutsig2_images.part000000000153/SDC3.3_1349_40000_0.20053_0.06755_0.051875.png
                gene_name: SDC3
               theta_stop: 0.084 
                    nperm: 40000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.054 

Current progress: 83 percent done.
SCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.494759e-02	ci left: 5.472988e-01	ci right 5.668679e-01	k: 5571	n:10000
KS ci ratio: 7.959375e-02	ci left: 1.873727e-01	ci right 2.030052e-01	k: 1951	n:10000
SCD   10000 perm   1 sec   (7618 perm/sec)   p_kst 1.951000e-01   p_cons 5.571000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SCD.2_1104_10000_0.1951_0.5571_1.png
                gene_name: SCD
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
SCGB1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.715456e-02	ci left: 8.319533e-01	ci right 8.464485e-01	k: 8393	n:10000
Cons ci ratio: 3.511784e-02	ci left: 5.448942e-01	ci right 5.644739e-01	k: 5547	n:10000
KS ci ratio: 1.071047e-02	ci left: 9.254425e-01	ci right 9.355050e-01	k: 9306	n:10000
SCGB1D1   10000 perm   1 sec   (8287 perm/sec)   p_kst 9.306000e-01   p_cons 5.547000e-01   p_joint 8.393000e-01

Outputting figure to mutsig2_images.part000000000153/SCGB1D1.2_285_10000_0.9306_0.5547_0.8393.png
                gene_name: SCGB1D1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 87 percent done.
SCML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.306720e-02	ci left: 5.744668e-01	ci right 5.938842e-01	k: 5842	n:10000
Cons ci ratio: 3.950098e-02	ci left: 4.862528e-01	ci right 5.059495e-01	k: 4961	n:10000
KS ci ratio: 6.139518e-02	ci left: 2.806233e-01	ci right 2.984994e-01	k: 2895	n:10000
SCML1   10000 perm   1 sec   (7506 perm/sec)   p_kst 2.895000e-01   p_cons 4.961000e-01   p_joint 5.842000e-01

Outputting figure to mutsig2_images.part000000000153/SCML1.2_1021_10000_0.2895_0.4961_0.5842.png
                gene_name: SCML1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 89 percent done.
SCN3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.793918e-02	ci left: 6.537398e-01	ci right 6.723652e-01	k: 6631	n:10000
KS ci ratio: 1.340175e-02	ci left: 8.892362e-01	ci right 9.013324e-01	k: 8954	n:10000
SCN3B   10000 perm   1 sec   (7720 perm/sec)   p_kst 8.954000e-01   p_cons 6.631000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SCN3B.2_668_10000_0.8954_0.6631_1.png
                gene_name: SCN3B
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
SCRIB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.368725e-01	ci left: 7.058968e-02	ci right 8.105902e-02	k: 757	n:10000
Cons ci ratio: 8.869635e-02	ci left: 1.561040e-01	ci right 1.706926e-01	k: 1633	n:10000
KS ci ratio: 7.235652e-02	ci left: 2.186229e-01	ci right 2.351365e-01	k: 2268	n:10000
SCRIB   10000 perm   2 sec   (5765 perm/sec)   p_kst 2.268000e-01   p_cons 1.633000e-01   p_joint 7.570000e-02

Joint ci ratio: 8.771001e-02	ci left: 8.680364e-02	ci right 9.481578e-02	k: 1815	n:20000
Cons ci ratio: 6.260429e-02	ci left: 1.587444e-01	ci right 1.690536e-01	k: 3277	n:20000
KS ci ratio: 5.064488e-02	ci left: 2.246282e-01	ci right 2.363503e-01	k: 4609	n:20000
SCRIB   20000 perm   4 sec   (5199 perm/sec)   p_kst 2.304500e-01   p_cons 1.638500e-01   p_joint 9.075000e-02

Outputting figure to mutsig2_images.part000000000153/SCRIB.2_5116_20000_0.23045_0.16385_0.09075.png
                gene_name: SCRIB
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.095 

Current progress: 92 percent done.
SCRN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.181024e-02	ci left: 5.932311e-01	ci right 6.125089e-01	k: 6029	n:10000
KS ci ratio: 6.453391e-03	ci left: 9.703722e-01	ci right 9.767479e-01	k: 9737	n:10000
SCRN2   10000 perm   1 sec   (7373 perm/sec)   p_kst 9.737000e-01   p_cons 6.029000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SCRN2.2_1324_10000_0.9737_0.6029_1.png
                gene_name: SCRN2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
SDF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.618316e-02	ci left: 2.510282e-01	ci right 2.683120e-01	k: 2596	n:10000
KS ci ratio: 2.182909e-02	ci left: 7.548431e-01	ci right 7.716033e-01	k: 7633	n:10000
SDF2   10000 perm   1 sec   (7855 perm/sec)   p_kst 7.633000e-01   p_cons 2.596000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SDF2.2_648_10000_0.7633_0.2596_1.png
                gene_name: SDF2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
SDHAF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.299376e-02	ci left: 7.353260e-01	ci right 7.525317e-01	k: 7440	n:10000
KS ci ratio: 1.268250e-02	ci left: 8.993926e-01	ci right 9.109701e-01	k: 9053	n:10000
SDHAF2   10000 perm   1 sec   (6733 perm/sec)   p_kst 9.053000e-01   p_cons 7.440000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000153/SDHAF2.2_517_10000_0.9053_0.744_1.png
                gene_name: SDHAF2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
SDHB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.238134e-01	ci left: 8.543267e-02	ci right 9.680682e-02	k: 910	n:10000
Cons ci ratio: 2.118569e-01	ci left: 2.958536e-02	ci right 3.669001e-02	k: 330	n:10000
KS ci ratio: 5.987856e-02	ci left: 2.909285e-01	ci right 3.089882e-01	k: 2999	n:10000
SDHB   10000 perm   1 sec   (7895 perm/sec)   p_kst 2.999000e-01   p_cons 3.300000e-02   p_joint 9.100000e-02

Joint ci ratio: 9.286544e-02	ci left: 7.798885e-02	ci right 8.563325e-02	k: 1635	n:20000
Cons ci ratio: 1.515943e-01	ci left: 2.989297e-02	ci right 3.484421e-02	k: 646	n:20000
KS ci ratio: 4.206509e-02	ci left: 2.963368e-01	ci right 3.091206e-01	k: 6054	n:20000
SDHB   20000 perm   3 sec   (6989 perm/sec)   p_kst 3.027000e-01   p_cons 3.230000e-02   p_joint 8.175000e-02

Joint ci ratio: 9.566566e-02	ci left: 5.045901e-02	ci right 5.556133e-02	k: 1589	n:30000
Cons ci ratio: 1.230907e-01	ci left: 3.068382e-02	ci right 3.474067e-02	k: 980	n:30000
KS ci ratio: 3.415850e-02	ci left: 2.998257e-01	ci right 3.102788e-01	k: 9151	n:30000
SDHB   30000 perm   5 sec   (6659 perm/sec)   p_kst 3.050333e-01   p_cons 3.266667e-02   p_joint 5.296667e-02

Joint ci ratio: 8.045270e-02	ci left: 5.376660e-02	ci right 5.829812e-02	k: 2240	n:40000
Cons ci ratio: 1.064740e-01	ci left: 3.102730e-02	ci right 3.454096e-02	k: 1310	n:40000
KS ci ratio: 2.953106e-02	ci left: 3.012616e-01	ci right 3.103166e-01	k: 12231	n:40000
SDHB   40000 perm   6 sec   (6401 perm/sec)   p_kst 3.057750e-01   p_cons 3.275000e-02   p_joint 5.600000e-02

Joint ci ratio: 7.216757e-02	ci left: 5.370561e-02	ci right 5.774617e-02	k: 2785	n:50000
Cons ci ratio: 9.620117e-02	ci left: 3.059174e-02	ci right 3.370289e-02	k: 1606	n:50000
KS ci ratio: 2.645201e-02	ci left: 3.011252e-01	ci right 3.092174e-01	k: 15258	n:50000
SDHB   50000 perm   8 sec   (6198 perm/sec)   p_kst 3.051600e-01   p_cons 3.212000e-02   p_joint 5.570000e-02

Outputting figure to mutsig2_images.part000000000153/SDHB.2_875_50000_0.30516_0.03212_0.0557.png
                gene_name: SDHB
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.056 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.058 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000153
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 153 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1654>
Subject: Job 9894127: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1654>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000154> was used as the working directory.
Started at Sat Oct  6 00:28:32 2012
Results reported at Sat Oct  6 00:37:02 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000154.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000154.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 154  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000154.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    535.27 sec.
    Max Memory :      3559 MB
    Max Swap   :      5885 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
154
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 154
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 154: processing genes 13794 - 13883
Calculating significance of each gene.
Using projection method.
13794	SDPR	1.138120e-01
13795	SDR16C5	5.365046e-01
13796	SDR39U1	5.013341e-01
13797	SDR42E1	1
13798	SDR9C7	7.628857e-01
13799	SDS	5.250043e-01
13800	SDSL	7.744522e-02
13801	SEBOX	7.484430e-01
13802	SEC11A	1
13803	SEC11C	3.098826e-03
13804	SEC13	4.243127e-01
13805	SEC14L1	5.899614e-01
13806	SEC14L2	6.682644e-01
13807	SEC14L3	3.976164e-01
13808	SEC14L4	1.107983e-01
13809	SEC14L5	2.159271e-01
13810	SEC16A	8.113646e-01
13811	SEC16B	7.099586e-01
13812	SEC22A	6.655350e-01
13813	SEC22B	4.134803e-01
13814	SEC22C	5.579972e-01
13815	SEC23A	7.524131e-01
13816	SEC23B	6.915188e-01
13817	SEC23IP	2.327066e-01
13818	SEC24A	9.775476e-01
13819	SEC24B	4.215001e-02
13820	SEC24C	8.318509e-01
13821	SEC24D	3.799901e-01
13822	SEC31A	8.650563e-01
13823	SEC31B	9.953733e-01
13824	SEC61A1	1.124302e-01
13825	SEC61A2	8.300744e-01
13826	SEC61B	2.738975e-01
13827	SEC61G	1
13828	SEC62	6.708194e-01
13829	SEC63	2.589663e-02
13830	SECISBP2	2.505841e-01
13831	SECISBP2L	2.320242e-02
13832	SECTM1	3.383765e-01
13833	SEH1L	8.175408e-01
13834	SEL1L	8.972259e-01
13835	SEL1L2	1.785597e-02
13836	SEL1L3	5.368523e-01
13837	SELE	5.752932e-01
13838	SELENBP1	1
13839	SELK	1
13840	SELL	7.520910e-01
13841	SELM	1
13842	SELO	6.857538e-01
13843	SELP	4.421719e-01
13844	SELPLG	6.930862e-01
13845	SELS	1
13846	SELT	3.415017e-01
13847	SELV	1
13848	SEMA3A	3.831109e-01
13849	SEMA3B	9.770573e-01
13850	SEMA3C	7.982938e-01
13851	SEMA3D	3.397691e-03
13852	SEMA3E	3.988432e-02
13853	SEMA3F	9.896297e-01
13854	SEMA3G	8.918770e-01
In gene SEMA4A the following bins exceed PROBCAP:
    COAD-AA-A00K	categ 6	N = 2342    n = 1	mu =   5.86e-07
13855	SEMA4A	7.329953e-01
13856	SEMA4B	6.836820e-01
13857	SEMA4C	1
13858	SEMA4D	4.181651e-02
13859	SEMA4F	6.517232e-02
13860	SEMA4G	2.889006e-01
13861	SEMA5A	6.160582e-01
13862	SEMA5B	2.447034e-02
13863	SEMA6A	9.667165e-01
13864	SEMA6B	9.217264e-01
13865	SEMA6C	7.053678e-01
13866	SEMA6D	3.397096e-01
13867	SEMA7A	8.016721e-01
13868	SEMG1	2.293617e-01
13869	SEMG2	1.740482e-02
13870	SENP1	4.794525e-01
13871	SENP2	6.063880e-01
13872	SENP3	7.611118e-01
13873	SENP5	1.124115e-01
13874	SENP6	9.681791e-01
In gene SENP7 the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 3249    n = 1	mu =   7.59e-07
13875	SENP7	4.741859e-02
13876	SENP8	1
13877	SEP15	1
13878	SEPHS1	1.224135e-01
13879	SEPHS2	6.800647e-01
13880	SEPN1	7.374577e-01
13881	SEPP1	8.614969e-01
13882	SEPSECS	6.219249e-01
13883	SEPT1	8.488777e-01
Done

Running MutSig 2:
Scatter job 154: processing genes 13794 - 13883
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SEMA3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.627337e-02	ci left: 6.808309e-01	ci right 6.990583e-01	k: 6900	n:10000
Cons ci ratio: 5.564151e-02	ci left: 3.223729e-01	ci right 3.409253e-01	k: 3316	n:10000
KS ci ratio: 3.145934e-02	ci left: 5.985520e-01	ci right 6.177849e-01	k: 6082	n:10000
SEMA3D   10000 perm   2 sec   (4886 perm/sec)   p_kst 6.082000e-01   p_cons 3.316000e-01   p_joint 6.900000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA3D.13_2402_10000_0.6082_0.3316_0.69.png
                gene_name: SEMA3D
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 2 percent done.
SEMA4D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.102203e-01	ci left: 3.005970e-02	ci right 3.721534e-02	k: 335	n:10000
Cons ci ratio: 1.558433e-01	ci left: 5.484605e-02	ci right 6.421259e-02	k: 594	n:10000
KS ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
SEMA4D   10000 perm   2 sec   (4992 perm/sec)   p_kst 5.500000e-02   p_cons 5.940000e-02   p_joint 3.350000e-02

Joint ci ratio: 1.179307e-01	ci left: 4.925481e-02	ci right 5.547615e-02	k: 1046	n:20000
Cons ci ratio: 1.115521e-01	ci left: 5.489734e-02	ci right 6.143185e-02	k: 1162	n:20000
KS ci ratio: 1.148384e-01	ci left: 5.188028e-02	ci right 5.824985e-02	k: 1100	n:20000
SEMA4D   20000 perm   4 sec   (4544 perm/sec)   p_kst 5.500000e-02   p_cons 5.810000e-02   p_joint 5.230000e-02

Joint ci ratio: 1.289114e-01	ci left: 2.796946e-02	ci right 3.185562e-02	k: 896	n:30000
Cons ci ratio: 9.079278e-02	ci left: 5.583789e-02	ci right 6.118135e-02	k: 1754	n:30000
KS ci ratio: 9.669752e-02	ci left: 4.941668e-02	ci right 5.447054e-02	k: 1557	n:30000
SEMA4D   30000 perm   7 sec   (4401 perm/sec)   p_kst 5.190000e-02   p_cons 5.846667e-02   p_joint 2.986667e-02

Joint ci ratio: 1.070238e-01	ci left: 3.071071e-02	ci right 3.420760e-02	k: 1297	n:40000
Cons ci ratio: 7.902447e-02	ci left: 5.565540e-02	ci right 6.025903e-02	k: 2317	n:40000
KS ci ratio: 8.362259e-02	ci left: 4.989327e-02	ci right 5.427205e-02	k: 2082	n:40000
SEMA4D   40000 perm   9 sec   (4294 perm/sec)   p_kst 5.205000e-02   p_cons 5.792500e-02   p_joint 3.242500e-02

Joint ci ratio: 9.235181e-02	ci left: 3.317152e-02	ci right 3.640279e-02	k: 1738	n:50000
Cons ci ratio: 7.016274e-02	ci left: 5.669463e-02	ci right 6.083678e-02	k: 2937	n:50000
KS ci ratio: 7.527991e-02	ci left: 4.950026e-02	ci right 5.339202e-02	k: 2571	n:50000
SEMA4D   50000 perm   12 sec   (4209 perm/sec)   p_kst 5.142000e-02   p_cons 5.874000e-02   p_joint 3.476000e-02

Outputting figure to mutsig2_images.part000000000154/SEMA4D.13_3215_50000_0.05142_0.05874_0.03476.png
                gene_name: SEMA4D
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 3 percent done.
SEC16A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.733220e-02	ci left: 8.291039e-01	ci right 8.436996e-01	k: 8365	n:10000
Cons ci ratio: 1.733220e-02	ci left: 8.291039e-01	ci right 8.436996e-01	k: 8365	n:10000
KS ci ratio: 2.885738e-02	ci left: 6.390502e-01	ci right 6.578633e-01	k: 6485	n:10000
SEC16A   10000 perm   3 sec   (3892 perm/sec)   p_kst 6.485000e-01   p_cons 8.365000e-01   p_joint 8.365000e-01

Outputting figure to mutsig2_images.part000000000154/SEC16A.11_7194_10000_0.6485_0.8365_0.8365.png
                gene_name: SEC16A
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 5 percent done.
SECISBP2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.166236e-02	ci left: 2.219788e-01	ci right 2.385786e-01	k: 2302	n:10000
Cons ci ratio: 3.563252e-02	ci left: 5.376819e-01	ci right 5.572905e-01	k: 5475	n:10000
KS ci ratio: 1.054030e-01	ci left: 1.150598e-01	ci right 1.279615e-01	k: 1214	n:10000
SECISBP2L   10000 perm   2 sec   (4869 perm/sec)   p_kst 1.214000e-01   p_cons 5.475000e-01   p_joint 2.302000e-01

Joint ci ratio: 6.062423e-02	ci left: 1.676325e-01	ci right 1.781628e-01	k: 3457	n:20000
Cons ci ratio: 2.563291e-02	ci left: 5.320613e-01	ci right 5.459273e-01	k: 10780	n:20000
KS ci ratio: 7.385945e-02	ci left: 1.188718e-01	ci right 1.280380e-01	k: 2468	n:20000
SECISBP2L   20000 perm   5 sec   (4438 perm/sec)   p_kst 1.234000e-01   p_cons 5.390000e-01   p_joint 1.728500e-01

Outputting figure to mutsig2_images.part000000000154/SECISBP2L.11_3239_20000_0.1234_0.539_0.17285.png
                gene_name: SECISBP2L
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 6 percent done.
SEMA5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.073389e-02	ci left: 7.731682e-01	ci right 7.894676e-01	k: 7814	n:10000
Cons ci ratio: 1.171276e-02	ci left: 9.125529e-01	ci right 9.234021e-01	k: 9181	n:10000
KS ci ratio: 2.950589e-02	ci left: 6.287933e-01	ci right 6.477261e-01	k: 6383	n:10000
SEMA5B   10000 perm   2 sec   (5051 perm/sec)   p_kst 6.383000e-01   p_cons 9.181000e-01   p_joint 7.814000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA5B.11_3544_10000_0.6383_0.9181_0.7814.png
                gene_name: SEMA5B
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 8 percent done.
SENP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.111015e-01	ci left: 1.045169e-01	ci right 1.169109e-01	k: 1106	n:10000
Cons ci ratio: 4.948217e-02	ci left: 3.759451e-01	ci right 3.951216e-01	k: 3855	n:10000
KS ci ratio: 1.791228e-01	ci left: 4.159407e-02	ci right 4.987317e-02	k: 456	n:10000
SENP7   10000 perm   2 sec   (4629 perm/sec)   p_kst 4.560000e-02   p_cons 3.855000e-01   p_joint 1.106000e-01

Joint ci ratio: 8.979208e-02	ci left: 8.308030e-02	ci right 9.094026e-02	k: 1739	n:20000
Cons ci ratio: 3.479773e-02	ci left: 3.813878e-01	ci right 3.949448e-01	k: 7763	n:20000
KS ci ratio: 1.256566e-01	ci left: 4.347738e-02	ci right 4.935540e-02	k: 927	n:20000
SENP7   20000 perm   5 sec   (4269 perm/sec)   p_kst 4.635000e-02   p_cons 3.881500e-01   p_joint 8.695000e-02

Joint ci ratio: 7.090198e-02	ci left: 8.917876e-02	ci right 9.576708e-02	k: 2773	n:30000
Cons ci ratio: 2.842812e-02	ci left: 3.823805e-01	ci right 3.934412e-01	k: 11637	n:30000
KS ci ratio: 1.017208e-01	ci left: 4.476252e-02	ci right 4.959233e-02	k: 1414	n:30000
SENP7   30000 perm   7 sec   (4123 perm/sec)   p_kst 4.713333e-02   p_cons 3.879000e-01   p_joint 9.243333e-02

Joint ci ratio: 6.943456e-02	ci left: 7.123179e-02	ci right 7.638029e-02	k: 2951	n:40000
Cons ci ratio: 2.464323e-02	ci left: 3.826717e-01	ci right 3.922447e-01	k: 15498	n:40000
KS ci ratio: 8.882856e-02	ci left: 4.435910e-02	ci right 4.850707e-02	k: 1856	n:40000
SENP7   40000 perm   10 sec   (4023 perm/sec)   p_kst 4.640000e-02   p_cons 3.874500e-01   p_joint 7.377500e-02

Outputting figure to mutsig2_images.part000000000154/SENP7.11_3249_40000_0.0464_0.38745_0.073775.png
                gene_name: SENP7
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.076 

Current progress: 10 percent done.
SEL1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.923265e-02	ci left: 7.981111e-01	ci right 8.137103e-01	k: 8060	n:10000
KS ci ratio: 1.491369e-02	ci left: 8.669281e-01	ci right 8.800535e-01	k: 8736	n:10000
SEL1L2   10000 perm   2 sec   (5596 perm/sec)   p_kst 8.736000e-01   p_cons 8.060000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEL1L2.10_2147_10000_0.8736_0.806_1.png
                gene_name: SEL1L2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
SEC24B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.822799e-01	ci left: 4.015916e-02	ci right 4.830902e-02	k: 441	n:10000
Cons ci ratio: 6.006440e-02	ci left: 2.896400e-01	ci right 3.076774e-01	k: 2986	n:10000
KS ci ratio: 2.058238e-01	ci left: 3.138896e-02	ci right 3.868516e-02	k: 349	n:10000
SEC24B   10000 perm   2 sec   (4971 perm/sec)   p_kst 3.490000e-02   p_cons 2.986000e-01   p_joint 4.410000e-02

Joint ci ratio: 1.311613e-01	ci left: 3.993964e-02	ci right 4.559426e-02	k: 854	n:20000
Cons ci ratio: 4.199048e-02	ci left: 2.970823e-01	ci right 3.098749e-01	k: 6069	n:20000
KS ci ratio: 1.456506e-01	ci left: 3.239930e-02	ci right 3.753705e-02	k: 698	n:20000
SEC24B   20000 perm   4 sec   (4492 perm/sec)   p_kst 3.490000e-02   p_cons 3.034500e-01   p_joint 4.270000e-02

Joint ci ratio: 8.815518e-02	ci left: 5.910110e-02	ci right 6.458413e-02	k: 1854	n:30000
Cons ci ratio: 3.406474e-02	ci left: 3.009867e-01	ci right 3.114509e-01	k: 9186	n:30000
KS ci ratio: 1.207561e-01	ci left: 3.188072e-02	ci right 3.601018e-02	k: 1017	n:30000
SEC24B   30000 perm   7 sec   (4324 perm/sec)   p_kst 3.390000e-02   p_cons 3.062000e-01   p_joint 6.180000e-02

Joint ci ratio: 8.481038e-02	ci left: 4.854575e-02	ci right 5.286977e-02	k: 2027	n:40000
Cons ci ratio: 2.996441e-02	ci left: 2.951379e-01	ci right 3.041412e-01	k: 11985	n:40000
KS ci ratio: 1.029917e-01	ci left: 3.314718e-02	ci right 3.677074e-02	k: 1397	n:40000
SEC24B   40000 perm   9 sec   (4216 perm/sec)   p_kst 3.492500e-02   p_cons 2.996250e-01   p_joint 5.067500e-02

Joint ci ratio: 6.963546e-02	ci left: 5.752082e-02	ci right 6.169049e-02	k: 2979	n:50000
Cons ci ratio: 2.682080e-02	ci left: 2.953076e-01	ci right 3.033557e-01	k: 14966	n:50000
KS ci ratio: 9.290674e-02	ci left: 3.278048e-02	ci right 3.599388e-02	k: 1718	n:50000
SEC24B   50000 perm   12 sec   (4126 perm/sec)   p_kst 3.436000e-02   p_cons 2.993200e-01   p_joint 5.958000e-02

Outputting figure to mutsig2_images.part000000000154/SEC24B.9_3903_50000_0.03436_0.29932_0.05958.png
                gene_name: SEC24B
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 13 percent done.
SEC24D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.591471e-02	ci left: 2.024465e-01	ci right 2.185225e-01	k: 2104	n:10000
Cons ci ratio: 1.477842e-02	ci left: 8.689718e-01	ci right 8.820086e-01	k: 8756	n:10000
KS ci ratio: 1.337476e-01	ci left: 7.378639e-02	ci right 8.446032e-02	k: 790	n:10000
SEC24D   10000 perm   2 sec   (5012 perm/sec)   p_kst 7.900000e-02   p_cons 8.756000e-01   p_joint 2.104000e-01

Joint ci ratio: 5.528105e-02	ci left: 1.953164e-01	ci right 2.064707e-01	k: 4017	n:20000
Cons ci ratio: 1.065170e-02	ci left: 8.666308e-01	ci right 8.759610e-01	k: 17427	n:20000
KS ci ratio: 9.593229e-02	ci left: 7.334198e-02	ci right 8.078153e-02	k: 1540	n:20000
SEC24D   20000 perm   4 sec   (4552 perm/sec)   p_kst 7.700000e-02   p_cons 8.713500e-01   p_joint 2.008500e-01

Outputting figure to mutsig2_images.part000000000154/SEC24D.9_3187_20000_0.077_0.87135_0.20085.png
                gene_name: SEC24D
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 14 percent done.
SEMA3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.624268e-02	ci left: 6.813348e-01	ci right 6.995541e-01	k: 6905	n:10000
Cons ci ratio: 4.409237e-03	ci left: 9.852332e-01	ci right 9.896760e-01	k: 9876	n:10000
KS ci ratio: 5.276977e-02	ci left: 3.461116e-01	ci right 3.649727e-01	k: 3555	n:10000
SEMA3A   10000 perm   2 sec   (5469 perm/sec)   p_kst 3.555000e-01   p_cons 9.876000e-01   p_joint 6.905000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA3A.9_2384_10000_0.3555_0.9876_0.6905.png
                gene_name: SEMA3A
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 16 percent done.
SEMA3E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.287760e-02	ci left: 4.454038e-01	ci right 4.650223e-01	k: 4552	n:10000
Cons ci ratio: 4.195586e-02	ci left: 4.561840e-01	ci right 4.758358e-01	k: 4660	n:10000
KS ci ratio: 5.168237e-02	ci left: 3.556540e-01	ci right 3.746246e-01	k: 3651	n:10000
SEMA3E   10000 perm   2 sec   (5169 perm/sec)   p_kst 3.651000e-01   p_cons 4.660000e-01   p_joint 4.552000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA3E.9_2396_10000_0.3651_0.466_0.4552.png
                gene_name: SEMA3E
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 17 percent done.
SEMA4F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.938832e-02	ci left: 3.768407e-01	ci right 3.960255e-01	k: 3864	n:10000
Cons ci ratio: 7.743137e-02	ci left: 1.960405e-01	ci right 2.119323e-01	k: 2039	n:10000
KS ci ratio: 4.088419e-02	ci left: 4.690663e-01	ci right 4.887460e-01	k: 4789	n:10000
SEMA4F   10000 perm   2 sec   (5307 perm/sec)   p_kst 4.789000e-01   p_cons 2.039000e-01   p_joint 3.864000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA4F.9_2369_10000_0.4789_0.2039_0.3864.png
                gene_name: SEMA4F
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 19 percent done.
SEMA6D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.074522e-02	ci left: 4.707644e-01	ci right 4.904469e-01	k: 4806	n:10000
Cons ci ratio: 8.149215e-02	ci left: 1.801871e-01	ci right 1.955952e-01	k: 1878	n:10000
KS ci ratio: 2.749029e-02	ci left: 6.609875e-01	ci right 6.795132e-01	k: 6703	n:10000
SEMA6D   10000 perm   2 sec   (5400 perm/sec)   p_kst 6.703000e-01   p_cons 1.878000e-01   p_joint 4.806000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA6D.9_3337_10000_0.6703_0.1878_0.4806.png
                gene_name: SEMA6D
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 21 percent done.
SEMA5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.006591e-02	ci left: 4.791570e-01	ci right 4.988495e-01	k: 4890	n:10000
Cons ci ratio: 5.866090e-02	ci left: 2.995534e-01	ci right 3.177582e-01	k: 3086	n:10000
KS ci ratio: 2.192571e-02	ci left: 7.532242e-01	ci right 7.700231e-01	k: 7617	n:10000
SEMA5A   10000 perm   2 sec   (4996 perm/sec)   p_kst 7.617000e-01   p_cons 3.086000e-01   p_joint 4.890000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA5A.8_3309_10000_0.7617_0.3086_0.489.png
                gene_name: SEMA5A
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 22 percent done.
SEC23IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.598625e-02	ci left: 5.327746e-01	ci right 5.524006e-01	k: 5426	n:10000
KS ci ratio: 1.348737e-02	ci left: 8.880063e-01	ci right 9.001631e-01	k: 8942	n:10000
SEC23IP   10000 perm   2 sec   (5287 perm/sec)   p_kst 8.942000e-01   p_cons 5.426000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEC23IP.7_3075_10000_0.8942_0.5426_1.png
                gene_name: SEC23IP
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
SEC63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.296414e-02	ci left: 4.444059e-01	ci right 4.640208e-01	k: 4542	n:10000
Cons ci ratio: 6.899925e-02	ci left: 2.355088e-01	ci right 2.524406e-01	k: 2439	n:10000
KS ci ratio: 4.552242e-02	ci left: 4.159818e-01	ci right 4.354615e-01	k: 4257	n:10000
SEC63   10000 perm   2 sec   (5552 perm/sec)   p_kst 4.257000e-01   p_cons 2.439000e-01   p_joint 4.542000e-01

Outputting figure to mutsig2_images.part000000000154/SEC63.7_2367_10000_0.4257_0.2439_0.4542.png
                gene_name: SEC63
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 25 percent done.
SENP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.305411e-02	ci left: 7.343154e-01	ci right 7.515429e-01	k: 7430	n:10000
Cons ci ratio: 5.439399e-03	ci left: 9.783435e-01	ci right 9.837711e-01	k: 9812	n:10000
KS ci ratio: 3.859523e-02	ci left: 4.978503e-01	ci right 5.175452e-01	k: 5077	n:10000
SENP5   10000 perm   2 sec   (5363 perm/sec)   p_kst 5.077000e-01   p_cons 9.812000e-01   p_joint 7.430000e-01

Outputting figure to mutsig2_images.part000000000154/SENP5.7_2304_10000_0.5077_0.9812_0.743.png
                gene_name: SENP5
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 27 percent done.
SEC14L5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.630117e-02	ci left: 8.454992e-01	ci right 8.594947e-01	k: 8526	n:10000
Cons ci ratio: 8.790262e-03	ci left: 9.478349e-01	ci right 9.562992e-01	k: 9522	n:10000
KS ci ratio: 2.399040e-02	ci left: 7.186579e-01	ci right 7.362094e-01	k: 7275	n:10000
SEC14L5   10000 perm   2 sec   (5694 perm/sec)   p_kst 7.275000e-01   p_cons 9.522000e-01   p_joint 8.526000e-01

Outputting figure to mutsig2_images.part000000000154/SEC14L5.6_2151_10000_0.7275_0.9522_0.8526.png
                gene_name: SEC14L5
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 29 percent done.
SEL1L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.747163e-02	ci left: 6.612896e-01	ci right 6.798110e-01	k: 6706	n:10000
Cons ci ratio: 9.653018e-03	ci left: 9.381717e-01	ci right 9.473683e-01	k: 9429	n:10000
KS ci ratio: 3.360775e-02	ci left: 5.665439e-01	ci right 5.860116e-01	k: 5763	n:10000
SEL1L3   10000 perm   2 sec   (4810 perm/sec)   p_kst 5.763000e-01   p_cons 9.429000e-01   p_joint 6.706000e-01

Outputting figure to mutsig2_images.part000000000154/SEL1L3.6_3495_10000_0.5763_0.9429_0.6706.png
                gene_name: SEL1L3
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 30 percent done.
SELP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.591685e-02	ci left: 8.515144e-01	ci right 8.652761e-01	k: 8585	n:10000
Cons ci ratio: 3.576213e-02	ci left: 5.358791e-01	ci right 5.554943e-01	k: 5457	n:10000
KS ci ratio: 1.133519e-02	ci left: 9.174977e-01	ci right 9.280545e-01	k: 9229	n:10000
SELP   10000 perm   2 sec   (5491 perm/sec)   p_kst 9.229000e-01   p_cons 5.457000e-01   p_joint 8.585000e-01

Outputting figure to mutsig2_images.part000000000154/SELP.6_2557_10000_0.9229_0.5457_0.8585.png
                gene_name: SELP
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 32 percent done.
SEMA4G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.564886e-02	ci left: 1.368792e-01	ci right 1.507290e-01	k: 1437	n:10000
Cons ci ratio: 1.373633e-01	ci left: 7.010558e-02	ci right 8.054343e-02	k: 752	n:10000
KS ci ratio: 6.160471e-02	ci left: 2.792365e-01	ci right 2.970871e-01	k: 2881	n:10000
SEMA4G   10000 perm   2 sec   (5454 perm/sec)   p_kst 2.881000e-01   p_cons 7.520000e-02   p_joint 1.437000e-01

Joint ci ratio: 6.633391e-02	ci left: 1.436968e-01	ci right 1.536056e-01	k: 2972	n:20000
Cons ci ratio: 9.727235e-02	ci left: 7.143550e-02	ci right 7.878860e-02	k: 1501	n:20000
KS ci ratio: 4.362511e-02	ci left: 2.812834e-01	ci right 2.938784e-01	k: 5751	n:20000
SEMA4G   20000 perm   4 sec   (4869 perm/sec)   p_kst 2.875500e-01   p_cons 7.505000e-02   p_joint 1.486000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA4G.6_2588_20000_0.28755_0.07505_0.1486.png
                gene_name: SEMA4G
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 33 percent done.
SEC14L4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.991392e-02	ci left: 4.810557e-01	ci right 5.007496e-01	k: 4909	n:10000
Cons ci ratio: 2.043026e-02	ci left: 7.782343e-01	ci right 7.943986e-01	k: 7864	n:10000
KS ci ratio: 6.642498e-02	ci left: 2.496437e-01	ci right 2.668973e-01	k: 2582	n:10000
SEC14L4   10000 perm   2 sec   (6059 perm/sec)   p_kst 2.582000e-01   p_cons 7.864000e-01   p_joint 4.909000e-01

Outputting figure to mutsig2_images.part000000000154/SEC14L4.5_1275_10000_0.2582_0.7864_0.4909.png
                gene_name: SEC14L4
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 35 percent done.
SEC61A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.702838e-02	ci left: 1.977156e-01	ci right 2.136562e-01	k: 2056	n:10000
Cons ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
KS ci ratio: 1.496762e-02	ci left: 8.661108e-01	ci right 8.792713e-01	k: 8728	n:10000
SEC61A1   10000 perm   2 sec   (5972 perm/sec)   p_kst 8.728000e-01   p_cons 2.820000e-02   p_joint 2.056000e-01

Joint ci ratio: 7.078503e-02	ci left: 1.282239e-01	ci right 1.376831e-01	k: 2658	n:20000
Cons ci ratio: 1.592602e-01	ci left: 2.705441e-02	ci right 3.178372e-02	k: 587	n:20000
KS ci ratio: 1.065882e-02	ci left: 8.664785e-01	ci right 8.758133e-01	k: 17424	n:20000
SEC61A1   20000 perm   4 sec   (5358 perm/sec)   p_kst 8.712000e-01   p_cons 2.935000e-02   p_joint 1.329000e-01

Joint ci ratio: 5.093690e-02	ci left: 1.606507e-01	ci right 1.690809e-01	k: 4945	n:30000
Cons ci ratio: 1.298848e-01	ci left: 2.754976e-02	ci right 3.140874e-02	k: 883	n:30000
KS ci ratio: 8.012663e-03	ci left: 8.850192e-01	ci right 8.921721e-01	k: 26659	n:30000
SEC61A1   30000 perm   6 sec   (5120 perm/sec)   p_kst 8.886333e-01   p_cons 2.943333e-02   p_joint 1.648333e-01

Joint ci ratio: 4.484218e-02	ci left: 1.567912e-01	ci right 1.640082e-01	k: 6415	n:40000
Cons ci ratio: 1.136652e-01	ci left: 2.723143e-02	ci right 3.053743e-02	k: 1154	n:40000
KS ci ratio: 6.980438e-03	ci left: 8.843122e-01	ci right 8.905315e-01	k: 35498	n:40000
SEC61A1   40000 perm   8 sec   (4957 perm/sec)   p_kst 8.874500e-01   p_cons 2.885000e-02   p_joint 1.603750e-01

Joint ci ratio: 4.028476e-02	ci left: 1.560030e-01	ci right 1.624366e-01	k: 7960	n:50000
Cons ci ratio: 1.029860e-01	ci left: 2.670792e-02	ci right 2.962721e-02	k: 1407	n:50000
KS ci ratio: 6.228723e-03	ci left: 8.851223e-01	ci right 8.906725e-01	k: 44396	n:50000
SEC61A1   50000 perm   10 sec   (4834 perm/sec)   p_kst 8.879200e-01   p_cons 2.814000e-02   p_joint 1.592000e-01

Joint ci ratio: 3.514109e-02	ci left: 1.687397e-01	ci right 1.747921e-01	k: 10305	n:60000
Cons ci ratio: 9.449175e-02	ci left: 2.656423e-02	ci right 2.921503e-02	k: 1672	n:60000
KS ci ratio: 5.702719e-03	ci left: 8.847763e-01	ci right 8.898529e-01	k: 53240	n:60000
SEC61A1   60000 perm   13 sec   (4721 perm/sec)   p_kst 8.873333e-01   p_cons 2.786667e-02   p_joint 1.717500e-01

Outputting figure to mutsig2_images.part000000000154/SEC61A1.5_1479_60000_0.88733_0.027867_0.17175.png
                gene_name: SEC61A1
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 37 percent done.
SEMG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.310805e-02	ci left: 5.738649e-01	ci right 5.932863e-01	k: 5836	n:10000
Cons ci ratio: 2.338006e-02	ci left: 7.288590e-01	ci right 7.462025e-01	k: 7376	n:10000
KS ci ratio: 4.517969e-02	ci left: 4.196701e-01	ci right 4.391710e-01	k: 4294	n:10000
SEMG2   10000 perm   2 sec   (5629 perm/sec)   p_kst 4.294000e-01   p_cons 7.376000e-01   p_joint 5.836000e-01

Outputting figure to mutsig2_images.part000000000154/SEMG2.5_1757_10000_0.4294_0.7376_0.5836.png
                gene_name: SEMG2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 38 percent done.
SENP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.611998e-02	ci left: 6.833505e-01	ci right 7.015373e-01	k: 6925	n:10000
Cons ci ratio: 2.605321e-03	ci left: 9.942123e-01	ci right 9.968864e-01	k: 9957	n:10000
KS ci ratio: 3.240467e-02	ci left: 5.842987e-01	ci right 6.036465e-01	k: 5940	n:10000
SENP1   10000 perm   2 sec   (5408 perm/sec)   p_kst 5.940000e-01   p_cons 9.957000e-01   p_joint 6.925000e-01

Outputting figure to mutsig2_images.part000000000154/SENP1.5_2000_10000_0.594_0.9957_0.6925.png
                gene_name: SENP1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 40 percent done.
SDPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.080322e-02	ci left: 6.085946e-01	ci right 6.277365e-01	k: 6182	n:10000
Cons ci ratio: 2.651925e-02	ci left: 6.768003e-01	ci right 6.950913e-01	k: 6860	n:10000
KS ci ratio: 5.012518e-02	ci left: 3.698758e-01	ci right 3.889945e-01	k: 3794	n:10000
SDPR   10000 perm   2 sec   (6185 perm/sec)   p_kst 3.794000e-01   p_cons 6.860000e-01   p_joint 6.182000e-01

Outputting figure to mutsig2_images.part000000000154/SDPR.4_1286_10000_0.3794_0.686_0.6182.png
                gene_name: SDPR
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 41 percent done.
SDSL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.541488e-03	ci left: 9.900531e-01	ci right 9.936515e-01	k: 9920	n:10000
KS ci ratio: 1.348737e-02	ci left: 8.880063e-01	ci right 9.001631e-01	k: 8942	n:10000
SDSL   10000 perm   2 sec   (6243 perm/sec)   p_kst 8.942000e-01   p_cons 9.920000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SDSL.4_1018_10000_0.8942_0.992_1.png
                gene_name: SDSL
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
SEC11C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.775073e-02	ci left: 2.422288e-01	ci right 2.593166e-01	k: 2507	n:10000
Cons ci ratio: 1.298648e-01	ci left: 7.805288e-02	ci right 8.899118e-02	k: 834	n:10000
KS ci ratio: 2.900308e-02	ci left: 6.367370e-01	ci right 6.555778e-01	k: 6462	n:10000
SEC11C   10000 perm   2 sec   (6350 perm/sec)   p_kst 6.462000e-01   p_cons 8.340000e-02   p_joint 2.507000e-01

Joint ci ratio: 3.860205e-02	ci left: 3.335828e-01	ci right 3.467637e-01	k: 6803	n:20000
Cons ci ratio: 9.231348e-02	ci left: 7.886975e-02	ci right 8.655209e-02	k: 1653	n:20000
KS ci ratio: 1.974790e-02	ci left: 6.567021e-01	ci right 6.698504e-01	k: 13266	n:20000
SEC11C   20000 perm   4 sec   (5566 perm/sec)   p_kst 6.633000e-01   p_cons 8.265000e-02   p_joint 3.401500e-01

Outputting figure to mutsig2_images.part000000000154/SEC11C.4_603_20000_0.6633_0.08265_0.34015.png
                gene_name: SEC11C
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 44 percent done.
SEC14L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.424497e-02	ci left: 5.573205e-01	ci right 5.768404e-01	k: 5671	n:10000
KS ci ratio: 1.473093e-02	ci left: 8.696873e-01	ci right 8.826927e-01	k: 8763	n:10000
SEC14L1   10000 perm   2 sec   (5772 perm/sec)   p_kst 8.763000e-01   p_cons 5.671000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEC14L1.4_2228_10000_0.8763_0.5671_1.png
                gene_name: SEC14L1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
SEC16B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.772473e-02	ci left: 5.092530e-01	ci right 5.289359e-01	k: 5191	n:10000
Cons ci ratio: 3.483445e-02	ci left: 5.489020e-01	ci right 5.684638e-01	k: 5587	n:10000
KS ci ratio: 9.371625e-02	ci left: 1.418777e-01	ci right 1.559275e-01	k: 1488	n:10000
SEC16B   10000 perm   2 sec   (5524 perm/sec)   p_kst 1.488000e-01   p_cons 5.587000e-01   p_joint 5.191000e-01

Outputting figure to mutsig2_images.part000000000154/SEC16B.4_3283_10000_0.1488_0.5587_0.5191.png
                gene_name: SEC16B
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 48 percent done.
SEC24A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.814575e-02	ci left: 6.504187e-01	ci right 6.690882e-01	k: 6598	n:10000
Cons ci ratio: 5.763252e-02	ci left: 3.070909e-01	ci right 3.254162e-01	k: 3162	n:10000
KS ci ratio: 1.158000e-02	ci left: 9.143035e-01	ci right 9.250505e-01	k: 9198	n:10000
SEC24A   10000 perm   2 sec   (5284 perm/sec)   p_kst 9.198000e-01   p_cons 3.162000e-01   p_joint 6.598000e-01

Outputting figure to mutsig2_images.part000000000154/SEC24A.4_3374_10000_0.9198_0.3162_0.6598.png
                gene_name: SEC24A
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 49 percent done.
SECISBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.865892e-02	ci left: 8.075529e-01	ci right 8.228631e-01	k: 8153	n:10000
KS ci ratio: 1.367889e-02	ci left: 8.852399e-01	ci right 8.975311e-01	k: 8915	n:10000
SECISBP2   10000 perm   2 sec   (5512 perm/sec)   p_kst 8.915000e-01   p_cons 8.153000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SECISBP2.4_2633_10000_0.8915_0.8153_1.png
                gene_name: SECISBP2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
SELE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.807373e-02	ci left: 5.046513e-01	ci right 5.243403e-01	k: 5145	n:10000
Cons ci ratio: 9.743651e-02	ci left: 1.324713e-01	ci right 1.461396e-01	k: 1392	n:10000
KS ci ratio: 5.230335e-03	ci left: 9.798420e-01	ci right 9.850715e-01	k: 9826	n:10000
SELE   10000 perm   2 sec   (6469 perm/sec)   p_kst 9.826000e-01   p_cons 1.392000e-01   p_joint 5.145000e-01

Outputting figure to mutsig2_images.part000000000154/SELE.4_1881_10000_0.9826_0.1392_0.5145.png
                gene_name: SELE
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 52 percent done.
SEMA3G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.155843e-02	ci left: 5.970460e-01	ci right 6.162918e-01	k: 6067	n:10000
Cons ci ratio: 6.466872e-02	ci left: 2.599312e-01	ci right 2.774037e-01	k: 2686	n:10000
KS ci ratio: 2.878148e-02	ci left: 6.402572e-01	ci right 6.590556e-01	k: 6497	n:10000
SEMA3G   10000 perm   2 sec   (6359 perm/sec)   p_kst 6.497000e-01   p_cons 2.686000e-01   p_joint 6.067000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA3G.4_2413_10000_0.6497_0.2686_0.6067.png
                gene_name: SEMA3G
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 54 percent done.
SEPSECS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.224372e-02	ci left: 5.867071e-01	ci right 6.060367e-01	k: 5964	n:10000
Cons ci ratio: 4.618013e-02	ci left: 4.090055e-01	ci right 4.284419e-01	k: 4187	n:10000
KS ci ratio: 6.077436e-02	ci left: 2.847843e-01	ci right 3.027359e-01	k: 2937	n:10000
SEPSECS   10000 perm   2 sec   (6006 perm/sec)   p_kst 2.937000e-01   p_cons 4.187000e-01   p_joint 5.964000e-01

Outputting figure to mutsig2_images.part000000000154/SEPSECS.4_1550_10000_0.2937_0.4187_0.5964.png
                gene_name: SEPSECS
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 56 percent done.
SEC22B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.746352e-02	ci left: 2.438103e-01	ci right 2.609341e-01	k: 2523	n:10000
Cons ci ratio: 2.729973e-01	ci left: 1.743979e-02	ci right 2.304459e-02	k: 201	n:10000
KS ci ratio: 6.279685e-02	ci left: 2.715119e-01	ci right 2.892162e-01	k: 2803	n:10000
SEC22B   10000 perm   2 sec   (6642 perm/sec)   p_kst 2.803000e-01   p_cons 2.010000e-02   p_joint 2.523000e-01

Joint ci ratio: 4.877705e-02	ci left: 2.381098e-01	ci right 2.500647e-01	k: 4881	n:20000
Cons ci ratio: 1.861088e-01	ci left: 1.967775e-02	ci right 2.376295e-02	k: 433	n:20000
KS ci ratio: 4.488225e-02	ci left: 2.698623e-01	ci right 2.823028e-01	k: 5521	n:20000
SEC22B   20000 perm   3 sec   (5914 perm/sec)   p_kst 2.760500e-01   p_cons 2.165000e-02   p_joint 2.440500e-01

Joint ci ratio: 6.343944e-02	ci left: 1.093069e-01	ci right 1.165016e-01	k: 3386	n:30000
Cons ci ratio: 1.503145e-01	ci left: 2.049831e-02	ci right 2.386178e-02	k: 664	n:30000
KS ci ratio: 3.663100e-02	ci left: 2.711788e-01	ci right 2.813312e-01	k: 8287	n:30000
SEC22B   30000 perm   5 sec   (5614 perm/sec)   p_kst 2.762333e-01   p_cons 2.213333e-02   p_joint 1.128667e-01

Joint ci ratio: 4.798651e-02	ci left: 1.395334e-01	ci right 1.464186e-01	k: 5718	n:40000
Cons ci ratio: 1.306041e-01	ci left: 2.058481e-02	ci right 2.348516e-02	k: 880	n:40000
KS ci ratio: 3.148449e-02	ci left: 2.748820e-01	ci right 2.837000e-01	k: 11171	n:40000
SEC22B   40000 perm   7 sec   (5408 perm/sec)   p_kst 2.792750e-01   p_cons 2.200000e-02   p_joint 1.429500e-01

Joint ci ratio: 4.278356e-02	ci left: 1.406757e-01	ci right 1.468457e-01	k: 7187	n:50000
Cons ci ratio: 1.166673e-01	ci left: 2.079038e-02	ci right 2.338552e-02	k: 1103	n:50000
KS ci ratio: 2.823212e-02	ci left: 2.743349e-01	ci right 2.822109e-01	k: 13913	n:50000
SEC22B   50000 perm   10 sec   (5247 perm/sec)   p_kst 2.782600e-01   p_cons 2.206000e-02   p_joint 1.437400e-01

Joint ci ratio: 4.445289e-02	ci left: 1.121771e-01	ci right 1.172936e-01	k: 6883	n:60000
Cons ci ratio: 1.054410e-01	ci left: 2.132816e-02	ci right 2.371834e-02	k: 1350	n:60000
KS ci ratio: 2.592044e-02	ci left: 2.723926e-01	ci right 2.795625e-01	k: 16558	n:60000
SEC22B   60000 perm   12 sec   (5116 perm/sec)   p_kst 2.759667e-01   p_cons 2.250000e-02   p_joint 1.147167e-01

Joint ci ratio: 4.119405e-02	ci left: 1.121784e-01	ci right 1.169108e-01	k: 8017	n:70000
Cons ci ratio: 9.832922e-02	ci left: 2.110731e-02	ci right 2.330397e-02	k: 1553	n:70000
KS ci ratio: 2.400011e-02	ci left: 2.726195e-01	ci right 2.792562e-01	k: 19315	n:70000
SEC22B   70000 perm   14 sec   (4997 perm/sec)   p_kst 2.759286e-01   p_cons 2.218571e-02   p_joint 1.145286e-01

Outputting figure to mutsig2_images.part000000000154/SEC22B.3_668_70000_0.27593_0.022186_0.11453.png
                gene_name: SEC22B
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 57 percent done.
SEC23B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.211635e-02	ci left: 4.542871e-01	ci right 4.739338e-01	k: 4641	n:10000
Cons ci ratio: 2.549086e-01	ci left: 2.015152e-02	ci right 2.613074e-02	k: 230	n:10000
KS ci ratio: 2.454756e-02	ci left: 7.093708e-01	ci right 7.271019e-01	k: 7183	n:10000
SEC23B   10000 perm   2 sec   (5990 perm/sec)   p_kst 7.183000e-01   p_cons 2.300000e-02   p_joint 4.641000e-01

Joint ci ratio: 2.453348e-02	ci left: 5.537883e-01	ci right 5.675940e-01	k: 11214	n:20000
Cons ci ratio: 1.810558e-01	ci left: 2.082370e-02	ci right 2.501659e-02	k: 457	n:20000
KS ci ratio: 1.732380e-02	ci left: 7.128147e-01	ci right 7.253216e-01	k: 14382	n:20000
SEC23B   20000 perm   4 sec   (5362 perm/sec)   p_kst 7.191000e-01   p_cons 2.285000e-02   p_joint 5.607000e-01

Joint ci ratio: 1.950316e-02	ci left: 5.682138e-01	ci right 5.794385e-01	k: 17215	n:30000
Cons ci ratio: 1.486093e-01	ci left: 2.097999e-02	ci right 2.437998e-02	k: 679	n:30000
KS ci ratio: 1.413442e-02	ci left: 7.142781e-01	ci right 7.244794e-01	k: 21582	n:30000
SEC23B   30000 perm   6 sec   (5128 perm/sec)   p_kst 7.194000e-01   p_cons 2.263333e-02   p_joint 5.738333e-01

Joint ci ratio: 2.089744e-02	ci left: 4.630751e-01	ci right 4.728795e-01	k: 18719	n:40000
Cons ci ratio: 1.275295e-01	ci left: 2.160162e-02	ci right 2.456818e-02	k: 922	n:40000
KS ci ratio: 1.223626e-02	ci left: 7.151194e-01	ci right 7.239487e-01	k: 28782	n:40000
SEC23B   40000 perm   8 sec   (4835 perm/sec)   p_kst 7.195500e-01   p_cons 2.305000e-02   p_joint 4.679750e-01

Joint ci ratio: 1.885340e-02	ci left: 4.593012e-01	ci right 4.680630e-01	k: 23184	n:50000
Cons ci ratio: 1.130547e-01	ci left: 2.215102e-02	ci right 2.482470e-02	k: 1173	n:50000
KS ci ratio: 1.096318e-02	ci left: 7.148969e-01	ci right 7.227977e-01	k: 35943	n:50000
SEC23B   50000 perm   11 sec   (4739 perm/sec)   p_kst 7.188600e-01   p_cons 2.346000e-02   p_joint 4.636800e-01

Joint ci ratio: 1.857838e-02	ci left: 4.219720e-01	ci right 4.299018e-01	k: 25556	n:60000
Cons ci ratio: 1.039550e-01	ci left: 2.194526e-02	ci right 2.436783e-02	k: 1388	n:60000
KS ci ratio: 1.004042e-02	ci left: 7.139290e-01	ci right 7.211500e-01	k: 43053	n:60000
SEC23B   60000 perm   13 sec   (4651 perm/sec)   p_kst 7.175500e-01   p_cons 2.313333e-02   p_joint 4.259333e-01

Joint ci ratio: 1.797711e-02	ci left: 4.008468e-01	ci right 4.081325e-01	k: 28314	n:70000
Cons ci ratio: 9.625895e-02	ci left: 2.202772e-02	ci right 2.426919e-02	k: 1619	n:70000
KS ci ratio: 9.284335e-03	ci left: 7.146935e-01	ci right 7.213741e-01	k: 50263	n:70000
SEC23B   70000 perm   15 sec   (4571 perm/sec)   p_kst 7.180429e-01   p_cons 2.312857e-02   p_joint 4.044857e-01

Outputting figure to mutsig2_images.part000000000154/SEC23B.3_2380_70000_0.71804_0.023129_0.40449.png
                gene_name: SEC23B
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 59 percent done.
SEC24C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.441419e-02	ci left: 7.115912e-01	ci right 7.292802e-01	k: 7205	n:10000
Cons ci ratio: 6.616595e-02	ci left: 2.511271e-01	ci right 2.684130e-01	k: 2597	n:10000
KS ci ratio: 3.062734e-02	ci left: 6.113069e-01	ci right 6.304227e-01	k: 6209	n:10000
SEC24C   10000 perm   2 sec   (5600 perm/sec)   p_kst 6.209000e-01   p_cons 2.597000e-01   p_joint 7.205000e-01

Outputting figure to mutsig2_images.part000000000154/SEC24C.3_3373_10000_0.6209_0.2597_0.7205.png
                gene_name: SEC24C
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 60 percent done.
SEL1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.438552e-02	ci left: 3.325008e-01	ci right 3.511914e-01	k: 3418	n:10000
Cons ci ratio: 7.415534e-02	ci left: 2.102365e-01	ci right 2.265279e-01	k: 2183	n:10000
KS ci ratio: 8.636922e-02	ci left: 1.633724e-01	ci right 1.782199e-01	k: 1707	n:10000
SEL1L   10000 perm   2 sec   (5962 perm/sec)   p_kst 1.707000e-01   p_cons 2.183000e-01   p_joint 3.418000e-01

Outputting figure to mutsig2_images.part000000000154/SEL1L.3_2469_10000_0.1707_0.2183_0.3418.png
                gene_name: SEL1L
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 62 percent done.
SELL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.855426e-02	ci left: 6.438786e-01	ci right 6.626321e-01	k: 6533	n:10000
KS ci ratio: 2.858578e-02	ci left: 6.433756e-01	ci right 6.621354e-01	k: 6528	n:10000
SELL   10000 perm   2 sec   (6419 perm/sec)   p_kst 6.528000e-01   p_cons 6.533000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SELL.3_1194_10000_0.6528_0.6533_1.png
                gene_name: SELL
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
SEMA3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.710244e-02	ci left: 5.175581e-01	ci right 5.372259e-01	k: 5274	n:10000
Cons ci ratio: 5.695986e-02	ci left: 3.121506e-01	ci right 3.305536e-01	k: 3213	n:10000
KS ci ratio: 4.473999e-02	ci left: 4.244558e-01	ci right 4.439826e-01	k: 4342	n:10000
SEMA3C   10000 perm   2 sec   (5978 perm/sec)   p_kst 4.342000e-01   p_cons 3.213000e-01   p_joint 5.274000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA3C.3_2324_10000_0.4342_0.3213_0.5274.png
                gene_name: SEMA3C
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 65 percent done.
SEMA4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.555591e-03	ci left: 9.774889e-01	ci right 9.830263e-01	k: 9804	n:10000
Cons ci ratio: 2.815829e-02	ci left: 6.502174e-01	ci right 6.688896e-01	k: 6596	n:10000
KS ci ratio: 1.920191e-02	ci left: 7.986185e-01	ci right 8.142026e-01	k: 8065	n:10000
SEMA4A   10000 perm   2 sec   (5697 perm/sec)   p_kst 8.065000e-01   p_cons 6.596000e-01   p_joint 9.804000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA4A.3_2342_10000_0.8065_0.6596_0.9804.png
                gene_name: SEMA4A
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 67 percent done.
SEMA6C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.519581e-02	ci left: 8.626380e-01	ci right 8.759461e-01	k: 8694	n:10000
Cons ci ratio: 3.404318e-02	ci left: 5.602275e-01	ci right 5.797317e-01	k: 5700	n:10000
KS ci ratio: 3.672464e-02	ci left: 5.226626e-01	ci right 5.423184e-01	k: 5325	n:10000
SEMA6C   10000 perm   2 sec   (5788 perm/sec)   p_kst 5.325000e-01   p_cons 5.700000e-01   p_joint 8.694000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA6C.3_2961_10000_0.5325_0.57_0.8694.png
                gene_name: SEMA6C
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 68 percent done.
SEMG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.744056e-02	ci left: 6.617930e-01	ci right 6.803073e-01	k: 6711	n:10000
Cons ci ratio: 3.711733e-02	ci left: 5.173580e-01	ci right 5.370262e-01	k: 5272	n:10000
KS ci ratio: 4.029907e-02	ci left: 4.762592e-01	ci right 4.959489e-01	k: 4861	n:10000
SEMG1   10000 perm   2 sec   (6498 perm/sec)   p_kst 4.861000e-01   p_cons 5.272000e-01   p_joint 6.711000e-01

Outputting figure to mutsig2_images.part000000000154/SEMG1.3_1397_10000_0.4861_0.5272_0.6711.png
                gene_name: SEMG1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 70 percent done.
SENP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.834243e-02	ci left: 3.869933e-01	ci right 4.062670e-01	k: 3966	n:10000
Cons ci ratio: 4.408155e-02	ci left: 4.317357e-01	ci right 4.512984e-01	k: 4415	n:10000
KS ci ratio: 5.915936e-02	ci left: 2.959840e-01	ci right 3.141297e-01	k: 3050	n:10000
SENP2   10000 perm   2 sec   (6282 perm/sec)   p_kst 3.050000e-01   p_cons 4.415000e-01   p_joint 3.966000e-01

Outputting figure to mutsig2_images.part000000000154/SENP2.3_1838_10000_0.305_0.4415_0.3966.png
                gene_name: SENP2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 71 percent done.
SEPHS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.400106e-02	ci left: 3.356792e-01	ci right 3.544111e-01	k: 3450	n:10000
Cons ci ratio: 3.931186e-02	ci left: 4.886519e-01	ci right 5.083490e-01	k: 4985	n:10000
KS ci ratio: 5.697292e-02	ci left: 3.120513e-01	ci right 3.304529e-01	k: 3212	n:10000
SEPHS1   10000 perm   2 sec   (6607 perm/sec)   p_kst 3.212000e-01   p_cons 4.985000e-01   p_joint 3.450000e-01

Outputting figure to mutsig2_images.part000000000154/SEPHS1.3_1211_10000_0.3212_0.4985_0.345.png
                gene_name: SEPHS1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 73 percent done.
SEPHS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.632269e-02	ci left: 4.075108e-01	ci right 4.269375e-01	k: 4172	n:10000
Cons ci ratio: 4.380558e-02	ci left: 4.348278e-01	ci right 4.544044e-01	k: 4446	n:10000
KS ci ratio: 5.487243e-02	ci left: 3.285285e-01	ci right 3.471661e-01	k: 3378	n:10000
SEPHS2   10000 perm   2 sec   (6399 perm/sec)   p_kst 3.378000e-01   p_cons 4.446000e-01   p_joint 4.172000e-01

Outputting figure to mutsig2_images.part000000000154/SEPHS2.3_1351_10000_0.3378_0.4446_0.4172.png
                gene_name: SEPHS2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 75 percent done.
SDR16C5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.632061e-02	ci left: 8.451935e-01	ci right 8.592007e-01	k: 8523	n:10000
KS ci ratio: 9.463632e-03	ci left: 9.403504e-01	ci right 9.493882e-01	k: 9450	n:10000
SDR16C5   10000 perm   1 sec   (7006 perm/sec)   p_kst 9.450000e-01   p_cons 8.523000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SDR16C5.2_954_10000_0.945_0.8523_1.png
                gene_name: SDR16C5
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
SDR39U1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.902211e-02	ci left: 6.364352e-01	ci right 6.552797e-01	k: 6459	n:10000
KS ci ratio: 4.641806e-02	ci left: 4.065144e-01	ci right 4.259345e-01	k: 4162	n:10000
SDR39U1   10000 perm   1 sec   (6809 perm/sec)   p_kst 4.162000e-01   p_cons 6.459000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SDR39U1.2_906_10000_0.4162_0.6459_1.png
                gene_name: SDR39U1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
SDS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.687064e-02	ci left: 6.710580e-01	ci right 6.894369e-01	k: 6803	n:10000
Cons ci ratio: 2.272828e-02	ci left: 7.397735e-01	ci right 7.568816e-01	k: 7484	n:10000
KS ci ratio: 1.158024e-01	ci left: 9.681653e-02	ci right 1.088160e-01	k: 1027	n:10000
SDS   10000 perm   1 sec   (6735 perm/sec)   p_kst 1.027000e-01   p_cons 7.484000e-01   p_joint 6.803000e-01

Joint ci ratio: 2.008044e-02	ci left: 6.491682e-01	ci right 6.623865e-01	k: 13116	n:20000
Cons ci ratio: 1.605653e-02	ci left: 7.426780e-01	ci right 7.547496e-01	k: 14975	n:20000
KS ci ratio: 8.199738e-02	ci left: 9.832948e-02	ci right 1.067865e-01	k: 2050	n:20000
SDS   20000 perm   3 sec   (5963 perm/sec)   p_kst 1.025000e-01   p_cons 7.487500e-01   p_joint 6.558000e-01

Outputting figure to mutsig2_images.part000000000154/SDS.2_1015_20000_0.1025_0.74875_0.6558.png
                gene_name: SDS
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 79 percent done.
SEC13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.562625e-01	ci left: 5.455711e-02	ci right 6.390171e-02	k: 591	n:10000
Cons ci ratio: 2.166412e-01	ci left: 2.825837e-02	ci right 3.521793e-02	k: 316	n:10000
KS ci ratio: 7.417707e-02	ci left: 2.101378e-01	ci right 2.264266e-01	k: 2182	n:10000
SEC13   10000 perm   1 sec   (6877 perm/sec)   p_kst 2.182000e-01   p_cons 3.160000e-02   p_joint 5.910000e-02

Joint ci ratio: 1.219146e-01	ci left: 4.614611e-02	ci right 5.218582e-02	k: 982	n:20000
Cons ci ratio: 1.560097e-01	ci left: 2.820837e-02	ci right 3.302937e-02	k: 611	n:20000
KS ci ratio: 5.260585e-02	ci left: 2.115513e-01	ci right 2.230310e-01	k: 4345	n:20000
SEC13   20000 perm   3 sec   (6022 perm/sec)   p_kst 2.172500e-01   p_cons 3.055000e-02   p_joint 4.910000e-02

Joint ci ratio: 1.157308e-01	ci left: 3.469785e-02	ci right 3.899245e-02	k: 1104	n:30000
Cons ci ratio: 1.270260e-01	ci left: 2.880916e-02	ci right 3.274907e-02	k: 922	n:30000
KS ci ratio: 4.315996e-02	ci left: 2.109906e-01	ci right 2.203312e-01	k: 6469	n:30000
SEC13   30000 perm   5 sec   (5707 perm/sec)   p_kst 2.156333e-01   p_cons 3.073333e-02   p_joint 3.680000e-02

Joint ci ratio: 8.823229e-02	ci left: 4.494643e-02	ci right 4.911965e-02	k: 1880	n:40000
Cons ci ratio: 1.101776e-01	ci left: 2.898247e-02	ci right 3.238611e-02	k: 1226	n:40000
KS ci ratio: 3.754049e-02	ci left: 2.101630e-01	ci right 2.182285e-01	k: 8567	n:40000
SEC13   40000 perm   7 sec   (5333 perm/sec)   p_kst 2.141750e-01   p_cons 3.065000e-02   p_joint 4.700000e-02

Joint ci ratio: 7.916961e-02	ci left: 4.488656e-02	ci right 4.860629e-02	k: 2336	n:50000
Cons ci ratio: 9.910577e-02	ci left: 2.883438e-02	ci right 3.186048e-02	k: 1516	n:50000
KS ci ratio: 3.353344e-02	ci left: 2.110280e-01	ci right 2.182452e-01	k: 10731	n:50000
SEC13   50000 perm   10 sec   (5199 perm/sec)   p_kst 2.146200e-01   p_cons 3.032000e-02   p_joint 4.672000e-02

Outputting figure to mutsig2_images.part000000000154/SEC13.2_1005_50000_0.21462_0.03032_0.04672.png
                gene_name: SEC13
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.047 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.049 

Current progress: 81 percent done.
SEC14L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.542450e-02	ci left: 5.405866e-01	ci right 5.601840e-01	k: 5504	n:10000
Cons ci ratio: 3.366971e-02	ci left: 5.656415e-01	ci right 5.851146e-01	k: 5754	n:10000
KS ci ratio: 9.809198e-02	ci left: 1.309046e-01	ci right 1.445072e-01	k: 1376	n:10000
SEC14L3   10000 perm   2 sec   (6644 perm/sec)   p_kst 1.376000e-01   p_cons 5.754000e-01   p_joint 5.504000e-01

Outputting figure to mutsig2_images.part000000000154/SEC14L3.2_1251_10000_0.1376_0.5754_0.5504.png
                gene_name: SEC14L3
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 83 percent done.
SEC23A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.104853e-01	ci left: 1.055899e-01	ci right 1.180372e-01	k: 1117	n:10000
Cons ci ratio: 1.265054e-01	ci left: 8.203252e-02	ci right 9.320908e-02	k: 875	n:10000
KS ci ratio: 4.703470e-02	ci left: 4.001384e-01	ci right 4.195142e-01	k: 4098	n:10000
SEC23A   10000 perm   2 sec   (6153 perm/sec)   p_kst 4.098000e-01   p_cons 8.750000e-02   p_joint 1.117000e-01

Joint ci ratio: 8.299286e-02	ci left: 9.617007e-02	ci right 1.045465e-01	k: 2006	n:20000
Cons ci ratio: 8.892717e-02	ci left: 8.459877e-02	ci right 9.252133e-02	k: 1770	n:20000
KS ci ratio: 3.305286e-02	ci left: 4.060146e-01	ci right 4.197107e-01	k: 8257	n:20000
SEC23A   20000 perm   4 sec   (5497 perm/sec)   p_kst 4.128500e-01   p_cons 8.850000e-02   p_joint 1.003000e-01

Outputting figure to mutsig2_images.part000000000154/SEC23A.2_2374_20000_0.41285_0.0885_0.1003.png
                gene_name: SEC23A
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.085 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 84 percent done.
SEC31A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.705025e-01	ci left: 4.590587e-02	ci right 5.455854e-02	k: 501	n:10000
Cons ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
KS ci ratio: 2.179286e-02	ci left: 7.554502e-01	ci right 7.721959e-01	k: 7639	n:10000
SEC31A   10000 perm   2 sec   (5573 perm/sec)   p_kst 7.639000e-01   p_cons 4.150000e-02   p_joint 5.010000e-02

Joint ci ratio: 1.210749e-01	ci left: 4.677729e-02	ci right 5.285444e-02	k: 995	n:20000
Cons ci ratio: 1.349137e-01	ci left: 3.776159e-02	ci right 4.327302e-02	k: 809	n:20000
KS ci ratio: 1.528174e-02	ci left: 7.609768e-01	ci right 7.727456e-01	k: 15338	n:20000
SEC31A   20000 perm   4 sec   (5003 perm/sec)   p_kst 7.669000e-01   p_cons 4.045000e-02   p_joint 4.975000e-02

Joint ci ratio: 9.749212e-02	ci left: 4.863513e-02	ci right 5.365225e-02	k: 1533	n:30000
Cons ci ratio: 1.076428e-01	ci left: 4.005018e-02	ci right 4.463898e-02	k: 1269	n:30000
KS ci ratio: 1.246818e-02	ci left: 7.623418e-01	ci right 7.719398e-01	k: 23015	n:30000
SEC31A   30000 perm   6 sec   (4782 perm/sec)   p_kst 7.671667e-01   p_cons 4.230000e-02   p_joint 5.110000e-02

Joint ci ratio: 9.898880e-02	ci left: 3.585456e-02	ci right 3.961294e-02	k: 1508	n:40000
Cons ci ratio: 9.277446e-02	ci left: 4.073943e-02	ci right 4.472729e-02	k: 1708	n:40000
KS ci ratio: 1.084964e-02	ci left: 7.612660e-01	ci right 7.695955e-01	k: 30618	n:40000
SEC31A   40000 perm   9 sec   (4641 perm/sec)   p_kst 7.654500e-01   p_cons 4.270000e-02   p_joint 3.770000e-02

Outputting figure to mutsig2_images.part000000000154/SEC31A.2_3767_40000_0.76545_0.0427_0.0377.png
                gene_name: SEC31A
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.040 

Current progress: 86 percent done.
SECTM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.100173e-02	ci left: 2.252368e-01	ci right 2.419187e-01	k: 2335	n:10000
Cons ci ratio: 4.129592e-02	ci left: 4.640723e-01	ci right 4.837429e-01	k: 4739	n:10000
KS ci ratio: 8.265884e-02	ci left: 1.759564e-01	ci right 1.912283e-01	k: 1835	n:10000
SECTM1   10000 perm   1 sec   (7015 perm/sec)   p_kst 1.835000e-01   p_cons 4.739000e-01   p_joint 2.335000e-01

Outputting figure to mutsig2_images.part000000000154/SECTM1.2_763_10000_0.1835_0.4739_0.2335.png
                gene_name: SECTM1
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 87 percent done.
SELO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.523615e-02	ci left: 2.054042e-01	ci right 2.215630e-01	k: 2134	n:10000
Cons ci ratio: 3.278220e-02	ci left: 5.786800e-01	ci right 5.980685e-01	k: 5884	n:10000
KS ci ratio: 1.511704e-01	ci left: 5.821938e-02	ci right 6.783712e-02	k: 629	n:10000
SELO   10000 perm   2 sec   (6553 perm/sec)   p_kst 6.290000e-02   p_cons 5.884000e-01   p_joint 2.134000e-01

Joint ci ratio: 3.693418e-02	ci left: 3.535924e-01	ci right 3.669483e-01	k: 7205	n:20000
Cons ci ratio: 2.304571e-02	ci left: 5.843990e-01	ci right 5.980745e-01	k: 11825	n:20000
KS ci ratio: 1.073055e-01	ci left: 5.918404e-02	ci right 6.594382e-02	k: 1250	n:20000
SELO   20000 perm   3 sec   (5795 perm/sec)   p_kst 6.250000e-02   p_cons 5.912500e-01   p_joint 3.602500e-01

Joint ci ratio: 2.403688e-02	ci left: 4.642388e-01	ci right 4.755670e-01	k: 14097	n:30000
Cons ci ratio: 1.890221e-02	ci left: 5.834742e-01	ci right 5.946419e-01	k: 17672	n:30000
KS ci ratio: 8.900205e-02	ci left: 5.802398e-02	ci right 6.346147e-02	k: 1821	n:30000
SELO   30000 perm   5 sec   (5492 perm/sec)   p_kst 6.070000e-02   p_cons 5.890667e-01   p_joint 4.699000e-01

Outputting figure to mutsig2_images.part000000000154/SELO.2_2046_30000_0.0607_0.58907_0.4699.png
                gene_name: SELO
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 89 percent done.
SELPLG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.066901e-02	ci left: 9.259590e-01	ci right 9.359882e-01	k: 9311	n:10000
Cons ci ratio: 1.060242e-02	ci left: 9.267855e-01	ci right 9.367612e-01	k: 9319	n:10000
KS ci ratio: 5.549126e-02	ci left: 3.235641e-01	ci right 3.421333e-01	k: 3328	n:10000
SELPLG   10000 perm   1 sec   (7021 perm/sec)   p_kst 3.328000e-01   p_cons 9.319000e-01   p_joint 9.311000e-01

Outputting figure to mutsig2_images.part000000000154/SELPLG.2_1217_10000_0.3328_0.9319_0.9311.png
                gene_name: SELPLG
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 90 percent done.
SEMA4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.447696e-02	ci left: 4.273475e-01	ci right 4.468891e-01	k: 4371	n:10000
Cons ci ratio: 8.818083e-02	ci left: 1.576751e-01	ci right 1.723206e-01	k: 1649	n:10000
KS ci ratio: 9.590211e-03	ci left: 9.388977e-01	ci right 9.480418e-01	k: 9436	n:10000
SEMA4B   10000 perm   2 sec   (6068 perm/sec)   p_kst 9.436000e-01   p_cons 1.649000e-01   p_joint 4.371000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA4B.2_2570_10000_0.9436_0.1649_0.4371.png
                gene_name: SEMA4B
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 92 percent done.
SEMA6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.024770e-02	ci left: 9.311281e-01	ci right 9.408160e-01	k: 9361	n:10000
Cons ci ratio: 2.830889e-02	ci left: 6.478024e-01	ci right 6.665060e-01	k: 6572	n:10000
KS ci ratio: 2.723572e-02	ci left: 6.651158e-01	ci right 6.835825e-01	k: 6744	n:10000
SEMA6A   10000 perm   2 sec   (5760 perm/sec)   p_kst 6.744000e-01   p_cons 6.572000e-01   p_joint 9.361000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA6A.2_3165_10000_0.6744_0.6572_0.9361.png
                gene_name: SEMA6A
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 94 percent done.
SEMA6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.087703e-02	ci left: 2.840908e-01	ci right 3.020299e-01	k: 2930	n:10000
Cons ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
KS ci ratio: 6.115731e-02	ci left: 2.822084e-01	ci right 3.001135e-01	k: 2911	n:10000
SEMA6B   10000 perm   2 sec   (6196 perm/sec)   p_kst 2.911000e-01   p_cons 9.500000e-02   p_joint 2.930000e-01

Joint ci ratio: 7.783271e-02	ci left: 1.081524e-01	ci right 1.169606e-01	k: 2250	n:20000
Cons ci ratio: 8.597664e-02	ci left: 9.008782e-02	ci right 9.823061e-02	k: 1882	n:20000
KS ci ratio: 4.336572e-02	ci left: 2.837172e-01	ci right 2.963439e-01	k: 5800	n:20000
SEMA6B   20000 perm   4 sec   (5516 perm/sec)   p_kst 2.900000e-01   p_cons 9.410000e-02   p_joint 1.125000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA6B.2_2731_20000_0.29_0.0941_0.1125.png
                gene_name: SEMA6B
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 95 percent done.
SEMA7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.594957e-02	ci left: 8.510045e-01	ci right 8.647863e-01	k: 8580	n:10000
Cons ci ratio: 4.839296e-02	ci left: 3.864955e-01	ci right 4.057650e-01	k: 3961	n:10000
KS ci ratio: 3.171733e-02	ci left: 5.946365e-01	ci right 6.139027e-01	k: 6043	n:10000
SEMA7A   10000 perm   2 sec   (6302 perm/sec)   p_kst 6.043000e-01   p_cons 3.961000e-01   p_joint 8.580000e-01

Outputting figure to mutsig2_images.part000000000154/SEMA7A.2_2057_10000_0.6043_0.3961_0.858.png
                gene_name: SEMA7A
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 97 percent done.
SENP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.483020e-01	ci left: 6.043844e-02	ci right 7.021664e-02	k: 652	n:10000
Cons ci ratio: 2.128566e-01	ci left: 2.930086e-02	ci right 3.637471e-02	k: 327	n:10000
KS ci ratio: 3.708012e-02	ci left: 5.178584e-01	ci right 5.375255e-01	k: 5277	n:10000
SENP6   10000 perm   2 sec   (5697 perm/sec)   p_kst 5.277000e-01   p_cons 3.270000e-02   p_joint 6.520000e-02

Joint ci ratio: 1.234409e-01	ci left: 4.502977e-02	ci right 5.100252e-02	k: 959	n:20000
Cons ci ratio: 1.422079e-01	ci left: 3.399185e-02	ci right 3.924397e-02	k: 731	n:20000
KS ci ratio: 2.594135e-02	ci left: 5.261063e-01	ci right 5.399841e-01	k: 10661	n:20000
SENP6   20000 perm   4 sec   (5104 perm/sec)   p_kst 5.330500e-01   p_cons 3.655000e-02   p_joint 4.795000e-02

Joint ci ratio: 4.647259e-02	ci left: 1.872260e-01	ci right 1.961672e-01	k: 5750	n:30000
Cons ci ratio: 1.170570e-01	ci left: 3.392034e-02	ci right 3.817013e-02	k: 1080	n:30000
KS ci ratio: 2.112555e-02	ci left: 5.287024e-01	ci right 5.400243e-01	k: 16031	n:30000
SENP6   30000 perm   6 sec   (4879 perm/sec)   p_kst 5.343667e-01   p_cons 3.600000e-02   p_joint 1.916667e-01

Joint ci ratio: 6.615207e-02	ci left: 7.802417e-02	ci right 8.338689e-02	k: 3227	n:40000
Cons ci ratio: 1.013869e-01	ci left: 3.419564e-02	ci right 3.787211e-02	k: 1440	n:40000
KS ci ratio: 1.832736e-02	ci left: 5.285963e-01	ci right 5.383988e-01	k: 21340	n:40000
SENP6   40000 perm   8 sec   (4731 perm/sec)   p_kst 5.335000e-01   p_cons 3.600000e-02   p_joint 8.067500e-02

Joint ci ratio: 7.417666e-02	ci left: 5.093440e-02	ci right 5.487771e-02	k: 2644	n:50000
Cons ci ratio: 9.068996e-02	ci left: 3.438411e-02	ci right 3.767004e-02	k: 1800	n:50000
KS ci ratio: 1.639260e-02	ci left: 5.291154e-01	ci right 5.378807e-01	k: 26675	n:50000
SENP6   50000 perm   11 sec   (4613 perm/sec)   p_kst 5.335000e-01   p_cons 3.600000e-02   p_joint 5.288000e-02

Outputting figure to mutsig2_images.part000000000154/SENP6.2_3435_50000_0.5335_0.036_0.05288.png
                gene_name: SENP6
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.055 

Current progress: 98 percent done.
SEPN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.966721e-02	ci left: 4.841538e-01	ci right 5.038497e-01	k: 4940	n:10000
KS ci ratio: 2.052141e-02	ci left: 7.767143e-01	ci right 7.929195e-01	k: 7849	n:10000
SEPN1   10000 perm   1 sec   (6681 perm/sec)   p_kst 7.849000e-01   p_cons 4.940000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000154/SEPN1.2_1825_10000_0.7849_0.494_1.png
                gene_name: SEPN1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000154
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 154 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9894128: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000155> was used as the working directory.
Started at Sat Oct  6 00:29:04 2012
Results reported at Sat Oct  6 00:35:58 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000155.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000155.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 155  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000155.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    405.78 sec.
    Max Memory :      3636 MB
    Max Swap   :      6022 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
155
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 155
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 155: processing genes 13884 - 13973
Calculating significance of each gene.
Using projection method.
13884	SEPT10	2.032697e-01
13885	SEPT11	2.931865e-01
13886	SEPT12	6.236747e-01
13887	SEPT14	3.121593e-01
13888	SEPT2	3.954361e-02
13889	SEPT3	2.102593e-01
13890	SEPT4	5.880571e-01
13891	SEPT5	6.200432e-01
13892	SEPT6	6.695204e-01
13893	SEPT7	5.150141e-01
13894	SEPT8	1
13895	SEPT9	9.326971e-01
13896	SEPW1	1
13897	SEPX1	1
13898	SERAC1	3.079067e-01
13899	SERBP1	8.282059e-01
13900	SERF2	1
13901	SERGEF	1.534278e-01
13902	SERHL2	1
13903	SERINC1	3.526851e-01
13904	SERINC2	8.492338e-01
13905	SERINC3	7.280776e-01
13906	SERINC4	1
13907	SERINC5	1
13908	SERP1	1.875278e-01
13909	SERP2	1.549703e-01
13910	SERPINA1	3.223889e-01
13911	SERPINA10	3.603043e-01
13912	SERPINA11	5.070879e-01
13913	SERPINA12	2.551038e-01
13914	SERPINA3	1.713849e-01
13915	SERPINA4	1.353667e-01
13916	SERPINA5	1.330452e-01
13917	SERPINA6	5.288299e-01
13918	SERPINA7	6.481026e-01
13919	SERPINA9	5.756288e-01
13920	SERPINB1	7.279059e-01
13921	SERPINB10	2.013803e-01
13922	SERPINB11	2.757634e-01
13923	SERPINB12	1.012649e-01
13924	SERPINB13	2.063833e-01
13925	SERPINB2	1.838801e-01
13926	SERPINB3	1
13927	SERPINB4	6.067046e-02
13928	SERPINB5	4.930119e-01
13929	SERPINB6	6.481447e-01
13930	SERPINB7	4.370718e-01
13931	SERPINB8	3.831103e-01
13932	SERPINB9	8.503255e-01
13933	SERPINC1	5.305468e-01
13934	SERPIND1	3.217402e-01
13935	SERPINE1	6.186652e-01
13936	SERPINE2	6.250820e-02
13937	SERPINE3	4.603716e-01
13938	SERPINF1	5.049426e-01
13939	SERPINF2	1
13940	SERPING1	1.914438e-01
13941	SERPINH1	7.834957e-01
13942	SERPINI1	6.522861e-02
13943	SERPINI2	1.647800e-01
13944	SERTAD1	1
13945	SERTAD2	7.825154e-01
13946	SERTAD3	4.082202e-03
13947	SERTAD4	5.207771e-01
13948	SESN1	6.927858e-01
13949	SESN2	3.026023e-01
In gene SESN3 the following bins exceed PROBCAP:
    COAD-AA-A00F	categ 6	N = 1437    n = 1	mu =   3.45e-08
13950	SESN3	2.380038e-02
In gene SESTD1 the following bins exceed PROBCAP:
    COAD-AA-3529	categ 6	N = 2159    n = 1	mu =   2.41e-07
13951	SESTD1	2.484520e-03
13952	SET	1
13953	SETBP1	1.169558e-01
13954	SETD1A	8.135894e-01
13955	SETD2	8.155641e-02
13956	SETD3	1.604153e-01
13957	SETD4	8.973460e-01
13958	SETD5	2.534939e-01
13959	SETD6	1
13960	SETD7	2.443710e-01
13961	SETD8	7.255962e-01
13962	SETDB1	1.079793e-01
13963	SETDB2	5.783738e-01
13964	SETMAR	8.769411e-01
13965	SETX	2.721671e-02
13966	SEZ6	9.973587e-01
13967	SEZ6L	4.393362e-02
13968	SEZ6L2	5.100402e-01
13969	SF1	1.686091e-01
13970	SF3A1	6.725142e-01
13971	SF3A2	7.870018e-01
13972	SF3A3	8.966469e-01
13973	SF3B1	1.524604e-01
Done

Running MutSig 2:
Scatter job 155: processing genes 13884 - 13973
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SETX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.950589e-02	ci left: 6.287933e-01	ci right 6.477261e-01	k: 6383	n:10000
Cons ci ratio: 1.568863e-03	ci left: 9.975272e-01	ci right 9.991602e-01	k: 9985	n:10000
KS ci ratio: 4.173737e-02	ci left: 4.587799e-01	ci right 4.784384e-01	k: 4686	n:10000
SETX   10000 perm   3 sec   (3776 perm/sec)   p_kst 4.686000e-01   p_cons 9.985000e-01   p_joint 6.383000e-01

Outputting figure to mutsig2_images.part000000000155/SETX.20_8130_10000_0.4686_0.9985_0.6383.png
                gene_name: SETX
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 2 percent done.
SETBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.006058e-01	ci left: 1.251301e-01	ci right 1.384852e-01	k: 1317	n:10000
Cons ci ratio: 1.103741e-01	ci left: 1.057850e-01	ci right 1.182420e-01	k: 1119	n:10000
KS ci ratio: 9.926549e-02	ci left: 1.281636e-01	ci right 1.416499e-01	k: 1348	n:10000
SETBP1   10000 perm   2 sec   (4671 perm/sec)   p_kst 1.348000e-01   p_cons 1.119000e-01   p_joint 1.317000e-01

Joint ci ratio: 7.668576e-02	ci left: 1.111014e-01	ci right 1.200107e-01	k: 2310	n:20000
Cons ci ratio: 7.610977e-02	ci left: 1.126255e-01	ci right 1.215862e-01	k: 2341	n:20000
KS ci ratio: 7.150001e-02	ci left: 1.259590e-01	ci right 1.353487e-01	k: 2612	n:20000
SETBP1   20000 perm   5 sec   (4191 perm/sec)   p_kst 1.306000e-01   p_cons 1.170500e-01   p_joint 1.155000e-01

Outputting figure to mutsig2_images.part000000000155/SETBP1.17_5004_20000_0.1306_0.11705_0.1155.png
                gene_name: SETBP1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 3 percent done.
SETD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.116124e-01	ci left: 1.036391e-01	ci right 1.159892e-01	k: 1097	n:10000
Cons ci ratio: 1.079470e-01	ci left: 1.101767e-01	ci right 1.228477e-01	k: 1164	n:10000
KS ci ratio: 8.773547e-02	ci left: 1.590500e-01	ci right 1.737448e-01	k: 1663	n:10000
SETD2   10000 perm   2 sec   (4163 perm/sec)   p_kst 1.663000e-01   p_cons 1.164000e-01   p_joint 1.097000e-01

Joint ci ratio: 7.838310e-02	ci left: 1.067765e-01	ci right 1.155369e-01	k: 2222	n:20000
Cons ci ratio: 7.719653e-02	ci left: 1.097742e-01	ci right 1.186383e-01	k: 2283	n:20000
KS ci ratio: 6.309995e-02	ci left: 1.566219e-01	ci right 1.668767e-01	k: 3234	n:20000
SETD2   20000 perm   5 sec   (3841 perm/sec)   p_kst 1.617000e-01   p_cons 1.141500e-01   p_joint 1.111000e-01

Outputting figure to mutsig2_images.part000000000155/SETD2.16_7779_20000_0.1617_0.11415_0.1111.png
                gene_name: SETD2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 5 percent done.
SEZ6L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.503252e-02	ci left: 4.212652e-01	ci right 4.407750e-01	k: 4310	n:10000
Cons ci ratio: 7.465850e-02	ci left: 2.079681e-01	ci right 2.241977e-01	k: 2160	n:10000
KS ci ratio: 2.802675e-02	ci left: 6.523307e-01	ci right 6.709750e-01	k: 6617	n:10000
SEZ6L   10000 perm   2 sec   (5519 perm/sec)   p_kst 6.617000e-01   p_cons 2.160000e-01   p_joint 4.310000e-01

Outputting figure to mutsig2_images.part000000000155/SEZ6L.10_3143_10000_0.6617_0.216_0.431.png
                gene_name: SEZ6L
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 6 percent done.
SF3B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.858457e-02	ci left: 8.087717e-01	ci right 8.240436e-01	k: 8165	n:10000
Cons ci ratio: 1.052715e-02	ci left: 9.277156e-01	ci right 9.376305e-01	k: 9328	n:10000
KS ci ratio: 2.486923e-02	ci left: 7.040227e-01	ci right 7.218531e-01	k: 7130	n:10000
SF3B1   10000 perm   2 sec   (5550 perm/sec)   p_kst 7.130000e-01   p_cons 9.328000e-01   p_joint 8.165000e-01

Outputting figure to mutsig2_images.part000000000155/SF3B1.10_4039_10000_0.713_0.9328_0.8165.png
                gene_name: SF3B1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 8 percent done.
SESTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.033134e-02	ci left: 4.758596e-01	ci right 4.955488e-01	k: 4857	n:10000
KS ci ratio: 2.638395e-02	ci left: 6.790170e-01	ci right 6.972732e-01	k: 6882	n:10000
SESTD1   10000 perm   2 sec   (5763 perm/sec)   p_kst 6.882000e-01   p_cons 4.857000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SESTD1.9_2159_10000_0.6882_0.4857_1.png
                gene_name: SESTD1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
SETD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.254729e-02	ci left: 7.428065e-01	ci right 7.598468e-01	k: 7514	n:10000
Cons ci ratio: 5.398911e-02	ci left: 3.357785e-01	ci right 3.545118e-01	k: 3451	n:10000
KS ci ratio: 1.980258e-02	ci left: 7.886762e-01	ci right 8.045507e-01	k: 7967	n:10000
SETD5   10000 perm   2 sec   (4788 perm/sec)   p_kst 7.967000e-01   p_cons 3.451000e-01   p_joint 7.514000e-01

Outputting figure to mutsig2_images.part000000000155/SETD5.9_4413_10000_0.7967_0.3451_0.7514.png
                gene_name: SETD5
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 11 percent done.
SETD1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.866476e-02	ci left: 4.969503e-01	ci right 5.166457e-01	k: 5068	n:10000
Cons ci ratio: 5.181638e-02	ci left: 3.544610e-01	ci right 3.734183e-01	k: 3639	n:10000
KS ci ratio: 4.527199e-02	ci left: 4.186732e-01	ci right 4.381685e-01	k: 4284	n:10000
SETD1A   10000 perm   2 sec   (4599 perm/sec)   p_kst 4.284000e-01   p_cons 3.639000e-01   p_joint 5.068000e-01

Outputting figure to mutsig2_images.part000000000155/SETD1A.8_5196_10000_0.4284_0.3639_0.5068.png
                gene_name: SETD1A
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 13 percent done.
SETDB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.273055e-02	ci left: 1.445251e-01	ci right 1.586785e-01	k: 1515	n:10000
Cons ci ratio: 3.083585e-02	ci left: 6.080924e-01	ci right 6.272390e-01	k: 6177	n:10000
KS ci ratio: 1.471006e-01	ci left: 6.140379e-02	ci right 7.125068e-02	k: 662	n:10000
SETDB1   10000 perm   2 sec   (5618 perm/sec)   p_kst 6.620000e-02   p_cons 6.177000e-01   p_joint 1.515000e-01

Joint ci ratio: 7.910556e-02	ci left: 1.050078e-01	ci right 1.137062e-01	k: 2186	n:20000
Cons ci ratio: 2.093937e-02	ci left: 6.299398e-01	ci right 6.433204e-01	k: 12733	n:20000
KS ci ratio: 1.020137e-01	ci left: 6.523233e-02	ci right 7.229367e-02	k: 1374	n:20000
SETDB1   20000 perm   4 sec   (5080 perm/sec)   p_kst 6.870000e-02   p_cons 6.366500e-01   p_joint 1.093000e-01

Joint ci ratio: 5.049744e-02	ci left: 1.630261e-01	ci right 1.715051e-01	k: 5017	n:30000
Cons ci ratio: 1.711874e-02	ci left: 6.305926e-01	ci right 6.415143e-01	k: 19082	n:30000
KS ci ratio: 8.352297e-02	ci left: 6.553607e-02	ci right 7.128119e-02	k: 2051	n:30000
SETDB1   30000 perm   6 sec   (4873 perm/sec)   p_kst 6.836667e-02   p_cons 6.360667e-01   p_joint 1.672333e-01

Outputting figure to mutsig2_images.part000000000155/SETDB1.8_3960_30000_0.068367_0.63607_0.16723.png
                gene_name: SETDB1
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 15 percent done.
SEZ6L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.440949e-02	ci left: 1.698592e-01	ci right 1.849292e-01	k: 1773	n:10000
Cons ci ratio: 1.295265e-01	ci left: 7.844097e-02	ci right 8.940285e-02	k: 838	n:10000
KS ci ratio: 3.382151e-02	ci left: 5.634356e-01	ci right 5.829217e-01	k: 5732	n:10000
SEZ6L2   10000 perm   2 sec   (6311 perm/sec)   p_kst 5.732000e-01   p_cons 8.380000e-02   p_joint 1.773000e-01

Joint ci ratio: 4.210997e-02	ci left: 2.958896e-01	ci right 3.086679e-01	k: 6045	n:20000
Cons ci ratio: 8.653582e-02	ci left: 8.900926e-02	ci right 9.710950e-02	k: 1860	n:20000
KS ci ratio: 2.396332e-02	ci left: 5.653581e-01	ci right 5.791209e-01	k: 11445	n:20000
SEZ6L2   20000 perm   4 sec   (5674 perm/sec)   p_kst 5.722500e-01   p_cons 9.300000e-02   p_joint 3.022500e-01

Outputting figure to mutsig2_images.part000000000155/SEZ6L2.7_2844_20000_0.57225_0.093_0.30225.png
                gene_name: SEZ6L2
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 16 percent done.
SERPINA12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.985807e-02	ci left: 4.817552e-01	ci right 5.014497e-01	k: 4916	n:10000
KS ci ratio: 3.156504e-02	ci left: 5.969456e-01	ci right 6.161923e-01	k: 6066	n:10000
SERPINA12   10000 perm   2 sec   (6629 perm/sec)   p_kst 6.066000e-01   p_cons 4.916000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SERPINA12.6_1261_10000_0.6066_0.4916_1.png
                gene_name: SERPINA12
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 18 percent done.
SESN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.067840e-01	ci left: 7.332900e-03	ci right 1.116119e-02	k: 91	n:10000
Cons ci ratio: 1.499047e-01	ci left: 5.918397e-02	ci right 6.887191e-02	k: 639	n:10000
KS ci ratio: 3.187220e-01	ci left: 1.252543e-02	ci right 1.736316e-02	k: 148	n:10000
SESN3   10000 perm   2 sec   (6273 perm/sec)   p_kst 1.480000e-02   p_cons 6.390000e-02   p_joint 9.100000e-03

Joint ci ratio: 2.163410e-01	ci left: 1.440132e-02	ci right 1.794137e-02	k: 322	n:20000
Cons ci ratio: 1.047818e-01	ci left: 6.196321e-02	ci right 6.886379e-02	k: 1307	n:20000
KS ci ratio: 2.212663e-01	ci left: 1.373916e-02	ci right 1.720379e-02	k: 308	n:20000
SESN3   20000 perm   4 sec   (5662 perm/sec)   p_kst 1.540000e-02   p_cons 6.535000e-02   p_joint 1.610000e-02

Joint ci ratio: 2.039269e-01	ci left: 1.092521e-02	ci right 1.343725e-02	k: 364	n:30000
Cons ci ratio: 9.140284e-02	ci left: 5.512030e-02	ci right 6.043241e-02	k: 1732	n:30000
KS ci ratio: 1.809622e-01	ci left: 1.400516e-02	ci right 1.682316e-02	k: 461	n:30000
SESN3   30000 perm   6 sec   (5394 perm/sec)   p_kst 1.536667e-02   p_cons 5.773333e-02   p_joint 1.213333e-02

Joint ci ratio: 1.431559e-01	ci left: 1.708140e-02	ci right 1.973917e-02	k: 735	n:40000
Cons ci ratio: 7.906068e-02	ci left: 5.560633e-02	ci right 6.020811e-02	k: 2315	n:40000
KS ci ratio: 1.565895e-01	ci left: 1.421605e-02	ci right 1.665503e-02	k: 616	n:40000
SESN3   40000 perm   8 sec   (5220 perm/sec)   p_kst 1.540000e-02   p_cons 5.787500e-02   p_joint 1.837500e-02

Joint ci ratio: 1.564503e-01	ci left: 1.142918e-02	ci right 1.338804e-02	k: 619	n:50000
Cons ci ratio: 7.012471e-02	ci left: 5.675364e-02	ci right 6.089777e-02	k: 2940	n:50000
KS ci ratio: 1.398053e-01	ci left: 1.439680e-02	ci right 1.657997e-02	k: 773	n:50000
SESN3   50000 perm   10 sec   (5091 perm/sec)   p_kst 1.546000e-02   p_cons 5.880000e-02   p_joint 1.238000e-02

Joint ci ratio: 1.175392e-01	ci left: 1.712924e-02	ci right 1.928439e-02	k: 1091	n:60000
Cons ci ratio: 6.385358e-02	ci left: 5.720976e-02	ci right 6.099970e-02	k: 3545	n:60000
KS ci ratio: 1.274017e-01	ci left: 1.454287e-02	ci right 1.653773e-02	k: 931	n:60000
SESN3   60000 perm   12 sec   (4968 perm/sec)   p_kst 1.551667e-02   p_cons 5.908333e-02   p_joint 1.818333e-02

Joint ci ratio: 1.147926e-01	ci left: 1.544431e-02	ci right 1.733894e-02	k: 1146	n:70000
Cons ci ratio: 5.956201e-02	ci left: 5.653318e-02	ci right 6.001784e-02	k: 4078	n:70000
KS ci ratio: 1.181906e-01	ci left: 1.455626e-02	ci right 1.639850e-02	k: 1082	n:70000
SESN3   70000 perm   14 sec   (4871 perm/sec)   p_kst 1.545714e-02   p_cons 5.825714e-02   p_joint 1.637143e-02

Joint ci ratio: 1.183621e-01	ci left: 1.272388e-02	ci right 1.433668e-02	k: 1081	n:80000
Cons ci ratio: 5.568803e-02	ci left: 5.669847e-02	ci right 5.995865e-02	k: 4665	n:80000
KS ci ratio: 1.099594e-01	ci left: 1.477695e-02	ci right 1.650843e-02	k: 1250	n:80000
SESN3   80000 perm   17 sec   (4754 perm/sec)   p_kst 1.562500e-02   p_cons 5.831250e-02   p_joint 1.351250e-02

Joint ci ratio: 1.215605e-01	ci left: 1.072743e-02	ci right 1.212654e-02	k: 1027	n:90000
Cons ci ratio: 5.264313e-02	ci left: 5.650356e-02	ci right 5.956945e-02	k: 5222	n:90000
KS ci ratio: 1.029807e-01	ci left: 1.502787e-02	ci right 1.667022e-02	k: 1425	n:90000
SESN3   90000 perm   19 sec   (4662 perm/sec)   p_kst 1.583333e-02   p_cons 5.802222e-02   p_joint 1.141111e-02

Joint ci ratio: 1.094713e-01	ci left: 1.196649e-02	ci right 1.336199e-02	k: 1265	n:100000
Cons ci ratio: 4.986571e-02	ci left: 5.674687e-02	ci right 5.965882e-02	k: 5819	n:100000
KS ci ratio: 9.739813e-02	ci left: 1.516305e-02	ci right 1.672521e-02	k: 1593	n:100000
SESN3   100000 perm   22 sec   (4574 perm/sec)   p_kst 1.593000e-02   p_cons 5.819000e-02   p_joint 1.265000e-02

Joint ci ratio: 1.071215e-01	ci left: 1.138259e-02	ci right 1.267970e-02	k: 1322	n:110000
Cons ci ratio: 4.742332e-02	ci left: 5.709326e-02	ci right 5.987553e-02	k: 6432	n:110000
KS ci ratio: 9.484733e-02	ci left: 1.456514e-02	ci right 1.602421e-02	k: 1681	n:110000
SESN3   110000 perm   24 sec   (4498 perm/sec)   p_kst 1.528182e-02   p_cons 5.847273e-02   p_joint 1.201818e-02

Joint ci ratio: 8.811488e-02	ci left: 1.550957e-02	ci right 1.694728e-02	k: 1946	n:120000
Cons ci ratio: 4.537287e-02	ci left: 5.722814e-02	ci right 5.989324e-02	k: 7026	n:120000
KS ci ratio: 9.080716e-02	ci left: 1.459680e-02	ci right 1.599344e-02	k: 1834	n:120000
SESN3   120000 perm   27 sec   (4425 perm/sec)   p_kst 1.528333e-02   p_cons 5.855000e-02   p_joint 1.621667e-02

Outputting figure to mutsig2_images.part000000000155/SESN3.6_1519_120000_0.015283_0.05855_0.016217.png
                gene_name: SESN3
               theta_stop: 0.091 
                    nperm: 120000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 19 percent done.
SETD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.869607e-02	ci left: 8.069435e-01	ci right 8.222728e-01	k: 8147	n:10000
KS ci ratio: 3.092731e-02	ci left: 6.066862e-01	ci right 6.258460e-01	k: 6163	n:10000
SETD3   10000 perm   2 sec   (5989 perm/sec)   p_kst 6.163000e-01   p_cons 8.147000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SETD3.6_1879_10000_0.6163_0.8147_1.png
                gene_name: SETD3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
SF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.049155e-01	ci left: 3.167400e-02	ci right 3.899992e-02	k: 352	n:10000
Cons ci ratio: 1.108764e-01	ci left: 1.049071e-01	ci right 1.173205e-01	k: 1110	n:10000
KS ci ratio: 2.105447e-01	ci left: 2.996481e-02	ci right 3.711029e-02	k: 334	n:10000
SF1   10000 perm   2 sec   (5869 perm/sec)   p_kst 3.340000e-02   p_cons 1.110000e-01   p_joint 3.520000e-02

Joint ci ratio: 1.320512e-01	ci left: 3.940703e-02	ci right 4.502705e-02	k: 843	n:20000
Cons ci ratio: 7.874221e-02	ci left: 1.058921e-01	ci right 1.146216e-01	k: 2204	n:20000
KS ci ratio: 1.492271e-01	ci left: 3.085647e-02	ci right 3.588039e-02	k: 666	n:20000
SF1   20000 perm   4 sec   (5297 perm/sec)   p_kst 3.330000e-02   p_cons 1.102000e-01   p_joint 4.215000e-02

Joint ci ratio: 1.237443e-01	ci left: 3.036047e-02	ci right 3.439743e-02	k: 970	n:30000
Cons ci ratio: 6.472837e-02	ci left: 1.053963e-01	ci right 1.124797e-01	k: 3267	n:30000
KS ci ratio: 1.238762e-01	ci left: 3.029580e-02	ci right 3.432877e-02	k: 968	n:30000
SF1   30000 perm   6 sec   (5077 perm/sec)   p_kst 3.226667e-02   p_cons 1.089000e-01   p_joint 3.233333e-02

Joint ci ratio: 1.016801e-01	ci left: 3.400054e-02	ci right 3.766724e-02	k: 1432	n:40000
Cons ci ratio: 5.632776e-02	ci left: 1.049497e-01	ci right 1.110574e-01	k: 4319	n:40000
KS ci ratio: 1.085900e-01	ci left: 2.983424e-02	ci right 3.328421e-02	k: 1261	n:40000
SF1   40000 perm   8 sec   (4932 perm/sec)   p_kst 3.152500e-02   p_cons 1.079750e-01   p_joint 3.580000e-02

Joint ci ratio: 8.471949e-02	ci left: 3.931782e-02	ci right 4.281572e-02	k: 2052	n:50000
Cons ci ratio: 5.047554e-02	ci left: 1.049165e-01	ci right 1.103692e-01	k: 5381	n:50000
KS ci ratio: 9.788146e-02	ci left: 2.955668e-02	ci right 3.261808e-02	k: 1553	n:50000
SF1   50000 perm   10 sec   (4809 perm/sec)   p_kst 3.106000e-02   p_cons 1.076200e-01   p_joint 4.104000e-02

Outputting figure to mutsig2_images.part000000000155/SF1.6_2485_50000_0.03106_0.10762_0.04104.png
                gene_name: SF1
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.043 

Current progress: 23 percent done.
SEPT10
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.664465e-02	ci left: 1.624881e-01	ci right 1.773047e-01	k: 1698	n:10000
Cons ci ratio: 1.000383e-01	ci left: 1.264020e-01	ci right 1.398125e-01	k: 1330	n:10000
KS ci ratio: 1.154273e-01	ci left: 9.740099e-02	ci right 1.094311e-01	k: 1033	n:10000
SEPT10   10000 perm   2 sec   (6514 perm/sec)   p_kst 1.033000e-01   p_cons 1.330000e-01   p_joint 1.698000e-01

Joint ci ratio: 6.643894e-02	ci left: 1.433023e-01	ci right 1.532002e-01	k: 2964	n:20000
Cons ci ratio: 7.023766e-02	ci left: 1.299968e-01	ci right 1.395096e-01	k: 2694	n:20000
KS ci ratio: 8.267273e-02	ci left: 9.685709e-02	ci right 1.052593e-01	k: 2020	n:20000
SEPT10   20000 perm   3 sec   (5968 perm/sec)   p_kst 1.010000e-01   p_cons 1.347000e-01   p_joint 1.482000e-01

Outputting figure to mutsig2_images.part000000000155/SEPT10.4_1409_20000_0.101_0.1347_0.1482.png
                gene_name: SEPT10
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 24 percent done.
SEPT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.202967e-02	ci left: 3.525721e-01	ci right 3.715083e-01	k: 3620	n:10000
KS ci ratio: 1.678445e-02	ci left: 8.378583e-01	ci right 8.521401e-01	k: 8451	n:10000
SEPT3   10000 perm   2 sec   (6270 perm/sec)   p_kst 8.451000e-01   p_cons 3.620000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SEPT3.5_1163_10000_0.8451_0.362_1.png
                gene_name: SEPT3
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
SEPT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.133354e-02	ci left: 7.631424e-01	ci right 7.796992e-01	k: 7715	n:10000
Cons ci ratio: 4.174575e-02	ci left: 4.586800e-01	ci right 4.783383e-01	k: 4685	n:10000
KS ci ratio: 1.485965e-02	ci left: 8.677455e-01	ci right 8.808356e-01	k: 8744	n:10000
SEPT4   10000 perm   1 sec   (6774 perm/sec)   p_kst 8.744000e-01   p_cons 4.685000e-01   p_joint 7.715000e-01

Outputting figure to mutsig2_images.part000000000155/SEPT4.5_1577_10000_0.8744_0.4685_0.7715.png
                gene_name: SEPT4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 27 percent done.
SERAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.414772e-02	ci left: 7.160328e-01	ci right 7.336360e-01	k: 7249	n:10000
Cons ci ratio: 6.186093e-02	ci left: 2.775527e-01	ci right 2.953719e-01	k: 2864	n:10000
KS ci ratio: 1.671391e-02	ci left: 8.389786e-01	ci right 8.532191e-01	k: 8462	n:10000
SERAC1   10000 perm   2 sec   (5842 perm/sec)   p_kst 8.462000e-01   p_cons 2.864000e-01   p_joint 7.249000e-01

Outputting figure to mutsig2_images.part000000000155/SERAC1.5_2029_10000_0.8462_0.2864_0.7249.png
                gene_name: SERAC1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 29 percent done.
SERPINA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.519871e-02	ci left: 1.672051e-01	ci right 1.821849e-01	k: 1746	n:10000
Cons ci ratio: 4.623708e-02	ci left: 4.084076e-01	ci right 4.278402e-01	k: 4181	n:10000
KS ci ratio: 1.315040e-01	ci left: 7.620996e-02	ci right 8.703524e-02	k: 815	n:10000
SERPINA4   10000 perm   2 sec   (6380 perm/sec)   p_kst 8.150000e-02   p_cons 4.181000e-01   p_joint 1.746000e-01

Joint ci ratio: 6.990824e-02	ci left: 1.310804e-01	ci right 1.406257e-01	k: 2716	n:20000
Cons ci ratio: 3.286949e-02	ci left: 4.087077e-01	ci right 4.224168e-01	k: 8311	n:20000
KS ci ratio: 9.228307e-02	ci left: 7.891869e-02	ci right 8.660313e-02	k: 1654	n:20000
SERPINA4   20000 perm   3 sec   (5733 perm/sec)   p_kst 8.270000e-02   p_cons 4.155500e-01   p_joint 1.358000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA4.5_1300_20000_0.0827_0.41555_0.1358.png
                gene_name: SERPINA4
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 31 percent done.
SERPINB10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.458093e-01	ci left: 6.246605e-02	ci right 7.238775e-02	k: 673	n:10000
Cons ci ratio: 2.801592e-01	ci left: 1.650803e-02	ci right 2.197711e-02	k: 191	n:10000
KS ci ratio: 3.446164e-02	ci left: 5.542133e-01	ci right 5.737494e-01	k: 5640	n:10000
SERPINB10   10000 perm   2 sec   (6642 perm/sec)   p_kst 5.640000e-01   p_cons 1.910000e-02   p_joint 6.730000e-02

Joint ci ratio: 9.984730e-02	ci left: 6.796658e-02	ci right 7.515858e-02	k: 1430	n:20000
Cons ci ratio: 1.983707e-01	ci left: 1.724818e-02	ci right 2.109342e-02	k: 382	n:20000
KS ci ratio: 2.475333e-02	ci left: 5.493818e-01	ci right 5.632018e-01	k: 11126	n:20000
SERPINB10   20000 perm   4 sec   (5412 perm/sec)   p_kst 5.563000e-01   p_cons 1.910000e-02   p_joint 7.150000e-02

Joint ci ratio: 7.878220e-02	ci left: 7.322218e-02	ci right 7.926019e-02	k: 2286	n:30000
Cons ci ratio: 1.643936e-01	ci left: 1.706924e-02	ci right 2.015832e-02	k: 557	n:30000
KS ci ratio: 2.021417e-02	ci left: 5.505894e-01	ci right 5.618664e-01	k: 16687	n:30000
SERPINB10   30000 perm   6 sec   (5341 perm/sec)   p_kst 5.562333e-01   p_cons 1.856667e-02   p_joint 7.620000e-02

Joint ci ratio: 6.858537e-02	ci left: 7.290470e-02	ci right 7.810713e-02	k: 3019	n:40000
Cons ci ratio: 1.414044e-01	ci left: 1.751566e-02	ci right 2.020484e-02	k: 753	n:40000
KS ci ratio: 1.755883e-02	ci left: 5.498632e-01	ci right 5.596288e-01	k: 22190	n:40000
SERPINB10   40000 perm   8 sec   (5278 perm/sec)   p_kst 5.547500e-01   p_cons 1.882500e-02   p_joint 7.547500e-02

Joint ci ratio: 5.193651e-02	ci left: 9.961737e-02	ci right 1.049489e-01	k: 5113	n:50000
Cons ci ratio: 1.247011e-01	ci left: 1.817023e-02	ci right 2.060602e-02	k: 968	n:50000
KS ci ratio: 1.573733e-02	ci left: 5.493698e-01	ci right 5.581040e-01	k: 27687	n:50000
SERPINB10   50000 perm   10 sec   (5199 perm/sec)   p_kst 5.537400e-01   p_cons 1.936000e-02   p_joint 1.022600e-01

Joint ci ratio: 4.638168e-02	ci left: 1.039105e-01	ci right 1.088610e-01	k: 6382	n:60000
Cons ci ratio: 1.140264e-01	ci left: 1.821414e-02	ci right 2.043270e-02	k: 1158	n:60000
KS ci ratio: 1.438191e-02	ci left: 5.492111e-01	ci right 5.571837e-01	k: 33192	n:60000
SERPINB10   60000 perm   12 sec   (5116 perm/sec)   p_kst 5.532000e-01   p_cons 1.930000e-02   p_joint 1.063667e-01

Joint ci ratio: 4.266225e-02	ci left: 1.053278e-01	ci right 1.099334e-01	k: 7533	n:70000
Cons ci ratio: 1.051393e-01	ci left: 1.844673e-02	ci right 2.050766e-02	k: 1362	n:70000
KS ci ratio: 1.329088e-02	ci left: 5.504084e-01	ci right 5.577871e-01	k: 38787	n:70000
SERPINB10   70000 perm   14 sec   (5035 perm/sec)   p_kst 5.541000e-01   p_cons 1.945714e-02   p_joint 1.076143e-01

Joint ci ratio: 4.473849e-02	ci left: 8.560018e-02	ci right 8.952979e-02	k: 7004	n:80000
Cons ci ratio: 9.843644e-02	ci left: 1.847984e-02	ci right 2.040523e-02	k: 1554	n:80000
KS ci ratio: 1.175428e-02	ci left: 5.781976e-01	ci right 5.850465e-01	k: 46530	n:80000
SERPINB10   80000 perm   16 sec   (4951 perm/sec)   p_kst 5.816250e-01   p_cons 1.942500e-02   p_joint 8.755000e-02

Outputting figure to mutsig2_images.part000000000155/SERPINB10.5_1222_80000_0.58162_0.019425_0.08755.png
                gene_name: SERPINB10
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.090 

Current progress: 32 percent done.
SERPINB11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.319882e-02	ci left: 4.417117e-01	ci right 4.613165e-01	k: 4515	n:10000
Cons ci ratio: 1.986977e-02	ci left: 7.875606e-01	ci right 8.034668e-01	k: 7956	n:10000
KS ci ratio: 6.599437e-02	ci left: 2.521161e-01	ci right 2.694235e-01	k: 2607	n:10000
SERPINB11   10000 perm   1 sec   (6750 perm/sec)   p_kst 2.607000e-01   p_cons 7.956000e-01   p_joint 4.515000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB11.5_1207_10000_0.2607_0.7956_0.4515.png
                gene_name: SERPINB11
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 34 percent done.
SERPINB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.524595e-02	ci left: 5.430910e-01	ci right 5.626782e-01	k: 5529	n:10000
Cons ci ratio: 8.938381e-02	ci left: 1.540423e-01	ci right 1.685555e-01	k: 1612	n:10000
KS ci ratio: 2.124885e-02	ci left: 7.645598e-01	ci right 7.810810e-01	k: 7729	n:10000
SERPINB2   10000 perm   1 sec   (7587 perm/sec)   p_kst 7.729000e-01   p_cons 1.612000e-01   p_joint 5.529000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB2.5_1276_10000_0.7729_0.1612_0.5529.png
                gene_name: SERPINB2
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 35 percent done.
SERPINB4
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.342233e-02	ci left: 7.281518e-01	ci right 7.455101e-01	k: 7369	n:10000
Cons ci ratio: 5.577984e-02	ci left: 3.212809e-01	ci right 3.398179e-01	k: 3305	n:10000
KS ci ratio: 9.178519e-03	ci left: 9.435701e-01	ci right 9.523667e-01	k: 9481	n:10000
SERPINB4   10000 perm   1 sec   (6690 perm/sec)   p_kst 9.481000e-01   p_cons 3.305000e-01   p_joint 7.369000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB4.4_1201_10000_0.9481_0.3305_0.7369.png
                gene_name: SERPINB4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 37 percent done.
SERPINE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.726648e-02	ci left: 5.153565e-01	ci right 5.350288e-01	k: 5252	n:10000
Cons ci ratio: 9.445442e-03	ci left: 9.405580e-01	ci right 9.495805e-01	k: 9452	n:10000
KS ci ratio: 6.323539e-02	ci left: 2.687398e-01	ci right 2.863900e-01	k: 2775	n:10000
SERPINE2   10000 perm   1 sec   (6691 perm/sec)   p_kst 2.775000e-01   p_cons 9.452000e-01   p_joint 5.252000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINE2.5_1269_10000_0.2775_0.9452_0.5252.png
                gene_name: SERPINE2
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 39 percent done.
SERPING1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.266730e-02	ci left: 5.803855e-01	ci right 5.997620e-01	k: 5901	n:10000
Cons ci ratio: 8.798932e-02	ci left: 1.582644e-01	ci right 1.729310e-01	k: 1655	n:10000
KS ci ratio: 1.754707e-02	ci left: 8.256448e-01	ci right 8.403607e-01	k: 8331	n:10000
SERPING1   10000 perm   2 sec   (6636 perm/sec)   p_kst 8.331000e-01   p_cons 1.655000e-01   p_joint 5.901000e-01

Outputting figure to mutsig2_images.part000000000155/SERPING1.5_1531_10000_0.8331_0.1655_0.5901.png
                gene_name: SERPING1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 40 percent done.
SEPT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.833363e-02	ci left: 5.012506e-01	ci right 5.209430e-01	k: 5111	n:10000
Cons ci ratio: 8.649139e-02	ci left: 1.629794e-01	ci right 1.778132e-01	k: 1703	n:10000
KS ci ratio: 4.634174e-02	ci left: 4.073115e-01	ci right 4.267369e-01	k: 4170	n:10000
SEPT2   10000 perm   1 sec   (6929 perm/sec)   p_kst 4.170000e-01   p_cons 1.703000e-01   p_joint 5.111000e-01

Outputting figure to mutsig2_images.part000000000155/SEPT2.4_1130_10000_0.417_0.1703_0.5111.png
                gene_name: SEPT2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 42 percent done.
SERGEF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.662153e-02	ci left: 5.240640e-01	ci right 5.437162e-01	k: 5339	n:10000
KS ci ratio: 3.944572e-02	ci left: 4.869525e-01	ci right 5.066494e-01	k: 4968	n:10000
SERGEF   10000 perm   1 sec   (7526 perm/sec)   p_kst 4.968000e-01   p_cons 5.339000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SERGEF.4_1421_10000_0.4968_0.5339_1.png
                gene_name: SERGEF
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 44 percent done.
SERPINA11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.989282e-02	ci left: 2.908294e-01	ci right 3.088873e-01	k: 2998	n:10000
Cons ci ratio: 1.158024e-01	ci left: 9.681653e-02	ci right 1.088160e-01	k: 1027	n:10000
KS ci ratio: 4.700555e-02	ci left: 4.004372e-01	ci right 4.198151e-01	k: 4101	n:10000
SERPINA11   10000 perm   1 sec   (6731 perm/sec)   p_kst 4.101000e-01   p_cons 1.027000e-01   p_joint 2.998000e-01

Joint ci ratio: 4.779294e-02	ci left: 2.456472e-01	ci right 2.577251e-01	k: 5033	n:20000
Cons ci ratio: 8.135796e-02	ci left: 9.975307e-02	ci right 1.082624e-01	k: 2079	n:20000
KS ci ratio: 3.356607e-02	ci left: 3.985848e-01	ci right 4.122427e-01	k: 8108	n:20000
SERPINA11   20000 perm   3 sec   (6003 perm/sec)   p_kst 4.054000e-01   p_cons 1.039500e-01   p_joint 2.516500e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA11.4_1285_20000_0.4054_0.10395_0.25165.png
                gene_name: SERPINA11
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.100 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 45 percent done.
SERPINA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.380295e-02	ci left: 7.217883e-01	ci right 7.392772e-01	k: 7306	n:10000
Cons ci ratio: 6.092823e-03	ci left: 9.733385e-01	ci right 9.793796e-01	k: 9765	n:10000
KS ci ratio: 4.502334e-02	ci left: 4.213649e-01	ci right 4.408752e-01	k: 4311	n:10000
SERPINA5   10000 perm   1 sec   (7594 perm/sec)   p_kst 4.311000e-01   p_cons 9.765000e-01   p_joint 7.306000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA5.4_1237_10000_0.4311_0.9765_0.7306.png
                gene_name: SERPINA5
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 47 percent done.
SERPINB12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.022542e-02	ci left: 6.175362e-01	ci right 6.365898e-01	k: 6271	n:10000
Cons ci ratio: 4.162025e-02	ci left: 4.601778e-01	ci right 4.798397e-01	k: 4700	n:10000
KS ci ratio: 4.152849e-02	ci left: 4.612762e-01	ci right 4.809407e-01	k: 4711	n:10000
SERPINB12   10000 perm   2 sec   (6610 perm/sec)   p_kst 4.711000e-01   p_cons 4.700000e-01   p_joint 6.271000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB12.4_1246_10000_0.4711_0.47_0.6271.png
                gene_name: SERPINB12
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 48 percent done.
SERPINF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.243504e-03	ci left: 9.428427e-01	ci right 9.516945e-01	k: 9474	n:10000
KS ci ratio: 2.269812e-02	ci left: 7.402790e-01	ci right 7.573759e-01	k: 7489	n:10000
SERPINF1   10000 perm   1 sec   (7556 perm/sec)   p_kst 7.489000e-01   p_cons 9.474000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SERPINF1.4_1285_10000_0.7489_0.9474_1.png
                gene_name: SERPINF1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
SERPINI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.388759e-02	ci left: 7.203745e-01	ci right 7.378918e-01	k: 7292	n:10000
KS ci ratio: 2.025994e-02	ci left: 7.810721e-01	ci right 7.971591e-01	k: 7892	n:10000
SERPINI1   10000 perm   2 sec   (6485 perm/sec)   p_kst 7.892000e-01   p_cons 7.292000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SERPINI1.4_1265_10000_0.7892_0.7292_1.png
                gene_name: SERPINI1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
SERPINI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.108443e-02	ci left: 6.042758e-01	ci right 6.234578e-01	k: 6139	n:10000
Cons ci ratio: 3.032889e-02	ci left: 6.159285e-01	ci right 6.349984e-01	k: 6255	n:10000
KS ci ratio: 4.436868e-02	ci left: 4.285442e-01	ci right 4.480917e-01	k: 4383	n:10000
SERPINI2   10000 perm   1 sec   (7076 perm/sec)   p_kst 4.383000e-01   p_cons 6.255000e-01   p_joint 6.139000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINI2.4_1250_10000_0.4383_0.6255_0.6139.png
                gene_name: SERPINI2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 53 percent done.
SERTAD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.822979e-03	ci left: 9.754639e-01	ci right 9.812528e-01	k: 9785	n:10000
Cons ci ratio: 3.579098e-02	ci left: 5.354785e-01	ci right 5.550951e-01	k: 5453	n:10000
KS ci ratio: 8.585952e-03	ci left: 9.500226e-01	ci right 9.583102e-01	k: 9543	n:10000
SERTAD3   10000 perm   1 sec   (7522 perm/sec)   p_kst 9.543000e-01   p_cons 5.453000e-01   p_joint 9.785000e-01

Outputting figure to mutsig2_images.part000000000155/SERTAD3.4_595_10000_0.9543_0.5453_0.9785.png
                gene_name: SERTAD3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 55 percent done.
SESN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.226108e-03	ci left: 9.537785e-01	ci right 9.617521e-01	k: 9579	n:10000
Cons ci ratio: 4.328612e-02	ci left: 4.407139e-01	ci right 4.603149e-01	k: 4505	n:10000
KS ci ratio: 2.836544e-02	ci left: 6.468968e-01	ci right 6.656121e-01	k: 6563	n:10000
SESN2   10000 perm   1 sec   (6851 perm/sec)   p_kst 6.563000e-01   p_cons 4.505000e-01   p_joint 9.579000e-01

Outputting figure to mutsig2_images.part000000000155/SESN2.4_1483_10000_0.6563_0.4505_0.9579.png
                gene_name: SESN2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 56 percent done.
SEPT11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.288106e-02	ci left: 8.966209e-01	ci right 9.083435e-01	k: 9026	n:10000
KS ci ratio: 2.727913e-02	ci left: 6.644110e-01	ci right 6.828878e-01	k: 6737	n:10000
SEPT11   10000 perm   1 sec   (6802 perm/sec)   p_kst 6.737000e-01   p_cons 9.026000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SEPT11.3_1330_10000_0.6737_0.9026_1.png
                gene_name: SEPT11
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
SEPT14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.331963e-02	ci left: 5.707557e-01	ci right 5.901974e-01	k: 5805	n:10000
KS ci ratio: 2.663624e-02	ci left: 6.748860e-01	ci right 6.932067e-01	k: 6841	n:10000
SEPT14   10000 perm   1 sec   (6987 perm/sec)   p_kst 6.841000e-01   p_cons 5.805000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SEPT14.3_1335_10000_0.6841_0.5805_1.png
                gene_name: SEPT14
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
SERPINA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.204093e-02	ci left: 3.524727e-01	ci right 3.714078e-01	k: 3619	n:10000
Cons ci ratio: 4.950306e-02	ci left: 3.757461e-01	ci right 3.949208e-01	k: 3853	n:10000
KS ci ratio: 7.014019e-02	ci left: 2.295818e-01	ci right 2.463711e-01	k: 2379	n:10000
SERPINA1   10000 perm   1 sec   (6866 perm/sec)   p_kst 2.379000e-01   p_cons 3.853000e-01   p_joint 3.619000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA1.3_1273_10000_0.2379_0.3853_0.3619.png
                gene_name: SERPINA1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 61 percent done.
SERPINA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.014148e-02	ci left: 6.188425e-01	ci right 6.378826e-01	k: 6284	n:10000
Cons ci ratio: 1.020829e-01	ci left: 1.219021e-01	ci right 1.351151e-01	k: 1284	n:10000
KS ci ratio: 1.540245e-02	ci left: 8.594729e-01	ci right 8.729130e-01	k: 8663	n:10000
SERPINA3   10000 perm   1 sec   (7672 perm/sec)   p_kst 8.663000e-01   p_cons 1.284000e-01   p_joint 6.284000e-01

Joint ci ratio: 1.636806e-02	ci left: 7.353222e-01	ci right 7.475076e-01	k: 14829	n:20000
Cons ci ratio: 7.375725e-02	ci left: 1.191670e-01	ci right 1.283427e-01	k: 2474	n:20000
KS ci ratio: 1.085264e-02	ci left: 8.623169e-01	ci right 8.717761e-01	k: 17342	n:20000
SERPINA3   20000 perm   3 sec   (6772 perm/sec)   p_kst 8.671000e-01   p_cons 1.237000e-01   p_joint 7.414500e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA3.3_1288_20000_0.8671_0.1237_0.74145.png
                gene_name: SERPINA3
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 63 percent done.
SERPINB13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.081873e-02	ci left: 4.698654e-01	ci right 4.895465e-01	k: 4797	n:10000
Cons ci ratio: 6.983219e-02	ci left: 2.311621e-01	ci right 2.479899e-01	k: 2395	n:10000
KS ci ratio: 2.772690e-02	ci left: 6.571620e-01	ci right 6.757409e-01	k: 6665	n:10000
SERPINB13   10000 perm   1 sec   (6955 perm/sec)   p_kst 6.665000e-01   p_cons 2.395000e-01   p_joint 4.797000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB13.3_1204_10000_0.6665_0.2395_0.4797.png
                gene_name: SERPINB13
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 65 percent done.
SERPINB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.423853e-02	ci left: 7.145185e-01	ci right 7.321512e-01	k: 7234	n:10000
Cons ci ratio: 4.520736e-02	ci left: 4.193710e-01	ci right 4.388703e-01	k: 4291	n:10000
KS ci ratio: 5.304723e-02	ci left: 3.437266e-01	ci right 3.625590e-01	k: 3531	n:10000
SERPINB8   10000 perm   1 sec   (7209 perm/sec)   p_kst 3.531000e-01   p_cons 4.291000e-01   p_joint 7.234000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB8.3_1162_10000_0.3531_0.4291_0.7234.png
                gene_name: SERPINB8
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 66 percent done.
SERPINC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.281241e-02	ci left: 2.714129e-01	ci right 2.891153e-01	k: 2802	n:10000
Cons ci ratio: 1.434278e-01	ci left: 6.449503e-02	ci right 7.455749e-02	k: 694	n:10000
KS ci ratio: 2.383317e-02	ci left: 7.212834e-01	ci right 7.387824e-01	k: 7301	n:10000
SERPINC1   10000 perm   1 sec   (7099 perm/sec)   p_kst 7.301000e-01   p_cons 6.940000e-02   p_joint 2.802000e-01

Joint ci ratio: 4.061620e-02	ci left: 3.112494e-01	ci right 3.242037e-01	k: 6354	n:20000
Cons ci ratio: 9.996020e-02	ci left: 6.782007e-02	ci right 7.500514e-02	k: 1427	n:20000
KS ci ratio: 1.716525e-02	ci left: 7.165394e-01	ci right 7.289958e-01	k: 14456	n:20000
SERPINC1   20000 perm   3 sec   (6328 perm/sec)   p_kst 7.228000e-01   p_cons 7.135000e-02   p_joint 3.177000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINC1.3_1423_20000_0.7228_0.07135_0.3177.png
                gene_name: SERPINC1
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 68 percent done.
SERPINE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.202778e-02	ci left: 2.764632e-01	ci right 2.942620e-01	k: 2853	n:10000
Cons ci ratio: 8.487514e-02	ci left: 1.682863e-01	ci right 1.833030e-01	k: 1757	n:10000
KS ci ratio: 4.577464e-02	ci left: 4.132907e-01	ci right 4.327542e-01	k: 4230	n:10000
SERPINE1   10000 perm   1 sec   (7136 perm/sec)   p_kst 4.230000e-01   p_cons 1.757000e-01   p_joint 2.853000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINE1.3_1241_10000_0.423_0.1757_0.2853.png
                gene_name: SERPINE1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 69 percent done.
SETD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.651866e-02	ci left: 5.254655e-01	ci right 5.451139e-01	k: 5353	n:10000
Cons ci ratio: 6.234863e-02	ci left: 2.743835e-01	ci right 2.921429e-01	k: 2832	n:10000
KS ci ratio: 3.011568e-02	ci left: 6.192445e-01	ci right 6.382804e-01	k: 6288	n:10000
SETD7   10000 perm   1 sec   (6967 perm/sec)   p_kst 6.288000e-01   p_cons 2.832000e-01   p_joint 5.353000e-01

Outputting figure to mutsig2_images.part000000000155/SETD7.3_1133_10000_0.6288_0.2832_0.5353.png
                gene_name: SETD7
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 71 percent done.
SETDB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.437765e-02	ci left: 5.554160e-01	ci right 5.749460e-01	k: 5652	n:10000
Cons ci ratio: 3.511784e-02	ci left: 5.448942e-01	ci right 5.644739e-01	k: 5547	n:10000
KS ci ratio: 4.420689e-02	ci left: 4.303394e-01	ci right 4.498955e-01	k: 4401	n:10000
SETDB2   10000 perm   2 sec   (6587 perm/sec)   p_kst 4.401000e-01   p_cons 5.547000e-01   p_joint 5.652000e-01

Outputting figure to mutsig2_images.part000000000155/SETDB2.3_2216_10000_0.4401_0.5547_0.5652.png
                gene_name: SETDB2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 73 percent done.
SF3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.903769e-02	ci left: 4.921509e-01	ci right 5.118480e-01	k: 5020	n:10000
Cons ci ratio: 9.776290e-02	ci left: 1.316879e-01	ci right 1.453234e-01	k: 1384	n:10000
KS ci ratio: 5.044595e-02	ci left: 3.668915e-01	ci right 3.859806e-01	k: 3764	n:10000
SF3A1   10000 perm   2 sec   (6542 perm/sec)   p_kst 3.764000e-01   p_cons 1.384000e-01   p_joint 5.020000e-01

Outputting figure to mutsig2_images.part000000000155/SF3A1.3_2446_10000_0.3764_0.1384_0.502.png
                gene_name: SF3A1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 74 percent done.
SEPT12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.440563e-02	ci left: 5.550151e-01	ci right 5.745471e-01	k: 5648	n:10000
Cons ci ratio: 5.777941e-02	ci left: 3.059998e-01	ci right 3.243080e-01	k: 3151	n:10000
KS ci ratio: 6.089172e-02	ci left: 2.839917e-01	ci right 3.019291e-01	k: 2929	n:10000
SEPT12   10000 perm   1 sec   (7510 perm/sec)   p_kst 2.929000e-01   p_cons 3.151000e-01   p_joint 5.648000e-01

Outputting figure to mutsig2_images.part000000000155/SEPT12.2_1113_10000_0.2929_0.3151_0.5648.png
                gene_name: SEPT12
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 76 percent done.
SEPT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.296871e-02	ci left: 8.953894e-01	ci right 9.071756e-01	k: 9014	n:10000
Cons ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
KS ci ratio: 1.525594e-02	ci left: 8.617190e-01	ci right 8.750656e-01	k: 8685	n:10000
SEPT9   10000 perm   1 sec   (6736 perm/sec)   p_kst 8.685000e-01   p_cons 7.340000e-02   p_joint 9.014000e-01

Joint ci ratio: 4.280689e-03	ci left: 9.745659e-01	ci right 9.787940e-01	k: 19535	n:20000
Cons ci ratio: 9.428489e-02	ci left: 7.578721e-02	ci right 8.333556e-02	k: 1590	n:20000
KS ci ratio: 1.072046e-02	ci left: 8.651588e-01	ci right 8.745334e-01	k: 17398	n:20000
SEPT9   20000 perm   3 sec   (6029 perm/sec)   p_kst 8.699000e-01   p_cons 7.950000e-02   p_joint 9.767500e-01

Outputting figure to mutsig2_images.part000000000155/SEPT9.2_2283_20000_0.8699_0.0795_0.97675.png
                gene_name: SEPT9
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 77 percent done.
SERBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.174454e-02	ci left: 7.562597e-01	ci right 7.729859e-01	k: 7647	n:10000
Cons ci ratio: 2.993328e-03	ci left: 9.926212e-01	ci right 9.956801e-01	k: 9943	n:10000
KS ci ratio: 4.694732e-02	ci left: 4.010349e-01	ci right 4.204171e-01	k: 4107	n:10000
SERBP1   10000 perm   1 sec   (7324 perm/sec)   p_kst 4.107000e-01   p_cons 9.943000e-01   p_joint 7.647000e-01

Outputting figure to mutsig2_images.part000000000155/SERBP1.2_1259_10000_0.4107_0.9943_0.7647.png
                gene_name: SERBP1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 79 percent done.
SERINC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.916815e-02	ci left: 6.341223e-01	ci right 6.529940e-01	k: 6436	n:10000
Cons ci ratio: 5.879861e-02	ci left: 2.985619e-01	ci right 3.167503e-01	k: 3076	n:10000
KS ci ratio: 1.912852e-01	ci left: 3.643453e-02	ci right 4.423614e-02	k: 402	n:10000
SERINC1   10000 perm   1 sec   (7351 perm/sec)   p_kst 4.020000e-02   p_cons 3.076000e-01   p_joint 6.436000e-01

Joint ci ratio: 1.019341e-01	ci left: 6.532996e-02	ci right 7.239601e-02	k: 1376	n:20000
Cons ci ratio: 4.180254e-02	ci left: 2.989708e-01	ci right 3.117858e-01	k: 6107	n:20000
KS ci ratio: 1.328752e-01	ci left: 3.892294e-02	ci right 4.451129e-02	k: 833	n:20000
SERINC1   20000 perm   3 sec   (6513 perm/sec)   p_kst 4.165000e-02   p_cons 3.053500e-01   p_joint 6.880000e-02

Joint ci ratio: 6.331308e-02	ci left: 1.097014e-01	ci right 1.169070e-01	k: 3398	n:30000
Cons ci ratio: 3.401403e-02	ci left: 3.016169e-01	ci right 3.120872e-01	k: 9205	n:30000
KS ci ratio: 1.087199e-01	ci left: 3.927096e-02	ci right 4.381837e-02	k: 1245	n:30000
SERINC1   30000 perm   5 sec   (6174 perm/sec)   p_kst 4.150000e-02   p_cons 3.068333e-01   p_joint 1.132667e-01

Joint ci ratio: 2.053588e-02	ci left: 4.717698e-01	ci right 4.815836e-01	k: 19067	n:40000
Cons ci ratio: 2.768328e-02	ci left: 3.292531e-01	ci right 3.385210e-01	k: 13355	n:40000
KS ci ratio: 9.434231e-02	ci left: 3.941973e-02	ci right 4.334720e-02	k: 1654	n:40000
SERINC1   40000 perm   7 sec   (5963 perm/sec)   p_kst 4.135000e-02   p_cons 3.338750e-01   p_joint 4.766750e-01

Outputting figure to mutsig2_images.part000000000155/SERINC1.2_1402_40000_0.04135_0.33387_0.47668.png
                gene_name: SERINC1
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 81 percent done.
SERINC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.625897e-02	ci left: 2.009680e-01	ci right 2.170019e-01	k: 2089	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
SERINC3   10000 perm   1 sec   (7557 perm/sec)   p_kst 1   p_cons 2.089000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SERINC3.2_1462_10000_1_0.2089_1.png
                gene_name: SERINC3
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
SERPINA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.467933e-02	ci left: 5.511066e-01	ci right 5.706579e-01	k: 5609	n:10000
KS ci ratio: 2.752760e-02	ci left: 6.603835e-01	ci right 6.789176e-01	k: 6697	n:10000
SERPINA10   10000 perm   1 sec   (7257 perm/sec)   p_kst 6.697000e-01   p_cons 5.609000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SERPINA10.2_1351_10000_0.6697_0.5609_1.png
                gene_name: SERPINA10
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
SERPINA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.879412e-02	ci left: 6.400560e-01	ci right 6.588569e-01	k: 6495	n:10000
Cons ci ratio: 3.679107e-02	ci left: 5.217618e-01	ci right 5.414198e-01	k: 5316	n:10000
KS ci ratio: 3.017375e-02	ci left: 6.183401e-01	ci right 6.373854e-01	k: 6279	n:10000
SERPINA6   10000 perm   1 sec   (7324 perm/sec)   p_kst 6.279000e-01   p_cons 5.316000e-01   p_joint 6.495000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINA6.2_1234_10000_0.6279_0.5316_0.6495.png
                gene_name: SERPINA6
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 85 percent done.
SERPINB5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.964110e-02	ci left: 2.321499e-01	ci right 2.490015e-01	k: 2405	n:10000
Cons ci ratio: 1.797809e-03	ci left: 9.969128e-01	ci right 9.987779e-01	k: 9980	n:10000
KS ci ratio: 2.191527e-01	ci left: 2.759554e-02	ci right 3.448123e-02	k: 309	n:10000
SERPINB5   10000 perm   1 sec   (7696 perm/sec)   p_kst 3.090000e-02   p_cons 9.980000e-01   p_joint 2.405000e-01

Joint ci ratio: 4.740908e-02	ci left: 2.486727e-01	ci right 2.607987e-01	k: 5094	n:20000
Cons ci ratio: 1.286481e-03	ci left: 9.971625e-01	ci right 9.984861e-01	k: 19958	n:20000
KS ci ratio: 1.548392e-01	ci left: 2.864136e-02	ci right 3.349624e-02	k: 620	n:20000
SERPINB5   20000 perm   3 sec   (6803 perm/sec)   p_kst 3.100000e-02   p_cons 9.979000e-01   p_joint 2.547000e-01

Joint ci ratio: 3.883046e-02	ci left: 2.486179e-01	ci right 2.584965e-01	k: 7606	n:30000
Cons ci ratio: 9.960080e-04	ci left: 9.975390e-01	ci right 9.985607e-01	k: 29943	n:30000
KS ci ratio: 1.269551e-01	ci left: 2.884147e-02	ci right 3.278342e-02	k: 923	n:30000
SERPINB5   30000 perm   5 sec   (6452 perm/sec)   p_kst 3.076667e-02   p_cons 9.981000e-01   p_joint 2.535333e-01

Joint ci ratio: 2.753459e-02	ci left: 3.316448e-01	ci right 3.409290e-01	k: 13451	n:40000
Cons ci ratio: 8.990732e-04	ci left: 9.974284e-01	ci right 9.983469e-01	k: 39917	n:40000
KS ci ratio: 1.096715e-01	ci left: 2.925013e-02	ci right 3.266841e-02	k: 1237	n:40000
SERPINB5   40000 perm   6 sec   (6226 perm/sec)   p_kst 3.092500e-02   p_cons 9.979250e-01   p_joint 3.362750e-01

Joint ci ratio: 2.808524e-02	ci left: 2.764257e-01	ci right 2.843198e-01	k: 14018	n:50000
Cons ci ratio: 8.343050e-04	ci left: 9.973053e-01	ci right 9.981552e-01	k: 49888	n:50000
KS ci ratio: 9.788146e-02	ci left: 2.955668e-02	ci right 3.261808e-02	k: 1553	n:50000
SERPINB5   50000 perm   8 sec   (6043 perm/sec)   p_kst 3.106000e-02   p_cons 9.977600e-01   p_joint 2.803600e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB5.2_1152_50000_0.03106_0.99776_0.28036.png
                gene_name: SERPINB5
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.28 

Current progress: 87 percent done.
SERPINB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.758897e-02	ci left: 5.110539e-01	ci right 5.307340e-01	k: 5209	n:10000
Cons ci ratio: 8.594478e-02	ci left: 1.647481e-01	ci right 1.796434e-01	k: 1721	n:10000
KS ci ratio: 1.740814e-02	ci left: 8.278829e-01	ci right 8.425213e-01	k: 8353	n:10000
SERPINB6   10000 perm   1 sec   (7767 perm/sec)   p_kst 8.353000e-01   p_cons 1.721000e-01   p_joint 5.209000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB6.2_1155_10000_0.8353_0.1721_0.5209.png
                gene_name: SERPINB6
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 89 percent done.
SERPINB7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.623708e-02	ci left: 4.084076e-01	ci right 4.278402e-01	k: 4181	n:10000
Cons ci ratio: 6.491644e-02	ci left: 2.584471e-01	ci right 2.758888e-01	k: 2671	n:10000
KS ci ratio: 1.465614e-02	ci left: 8.708117e-01	ci right 8.837677e-01	k: 8774	n:10000
SERPINB7   10000 perm   1 sec   (7383 perm/sec)   p_kst 8.774000e-01   p_cons 2.671000e-01   p_joint 4.181000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINB7.2_1171_10000_0.8774_0.2671_0.4181.png
                gene_name: SERPINB7
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 90 percent done.
SERPIND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.620425e-02	ci left: 5.297706e-01	ci right 5.494063e-01	k: 5396	n:10000
Cons ci ratio: 4.143695e-02	ci left: 4.623746e-01	ci right 4.820416e-01	k: 4722	n:10000
KS ci ratio: 4.912899e-02	ci left: 3.793287e-01	ci right 3.985361e-01	k: 3889	n:10000
SERPIND1   10000 perm   1 sec   (7221 perm/sec)   p_kst 3.889000e-01   p_cons 4.722000e-01   p_joint 5.396000e-01

Outputting figure to mutsig2_images.part000000000155/SERPIND1.2_1516_10000_0.3889_0.4722_0.5396.png
                gene_name: SERPIND1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 92 percent done.
SERPINE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.449229e-02	ci left: 8.732655e-01	ci right 8.861124e-01	k: 8798	n:10000
Cons ci ratio: 3.681323e-02	ci left: 5.214615e-01	ci right 5.411203e-01	k: 5313	n:10000
KS ci ratio: 2.233008e-02	ci left: 7.464469e-01	ci right 7.634043e-01	k: 7550	n:10000
SERPINE3   10000 perm   1 sec   (7160 perm/sec)   p_kst 7.550000e-01   p_cons 5.313000e-01   p_joint 8.798000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINE3.2_1303_10000_0.755_0.5313_0.8798.png
                gene_name: SERPINE3
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 94 percent done.
SERPINH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.390326e-02	ci left: 4.337306e-01	ci right 4.533023e-01	k: 4435	n:10000
Cons ci ratio: 6.064282e-02	ci left: 2.856761e-01	ci right 3.036436e-01	k: 2946	n:10000
KS ci ratio: 6.087703e-02	ci left: 2.840908e-01	ci right 3.020299e-01	k: 2930	n:10000
SERPINH1   10000 perm   1 sec   (7714 perm/sec)   p_kst 2.930000e-01   p_cons 2.946000e-01   p_joint 4.435000e-01

Outputting figure to mutsig2_images.part000000000155/SERPINH1.2_1273_10000_0.293_0.2946_0.4435.png
                gene_name: SERPINH1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 95 percent done.
SERTAD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.424714e-03	ci left: 9.784504e-01	ci right 9.838641e-01	k: 9813	n:10000
Cons ci ratio: 2.588722e-02	ci left: 6.871808e-01	ci right 7.053048e-01	k: 6963	n:10000
KS ci ratio: 1.915886e-02	ci left: 7.993290e-01	ci right 8.148917e-01	k: 8072	n:10000
SERTAD4   10000 perm   1 sec   (7487 perm/sec)   p_kst 8.072000e-01   p_cons 6.963000e-01   p_joint 9.813000e-01

Outputting figure to mutsig2_images.part000000000155/SERTAD4.2_1083_10000_0.8072_0.6963_0.9813.png
                gene_name: SERTAD4
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 97 percent done.
SESN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.041214e-02	ci left: 4.748604e-01	ci right 4.945485e-01	k: 4847	n:10000
KS ci ratio: 1.189849e-02	ci left: 9.100826e-01	ci right 9.210739e-01	k: 9157	n:10000
SESN1   10000 perm   1 sec   (7093 perm/sec)   p_kst 9.157000e-01   p_cons 4.847000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000155/SESN1.2_1696_10000_0.9157_0.4847_1.png
                gene_name: SESN1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
SETD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.393222e-02	ci left: 5.618315e-01	ci right 5.813268e-01	k: 5716	n:10000
Cons ci ratio: 6.973651e-02	ci left: 2.316560e-01	ci right 2.484957e-01	k: 2400	n:10000
KS ci ratio: 2.799546e-02	ci left: 6.528339e-01	ci right 6.714715e-01	k: 6622	n:10000
SETD8   10000 perm   1 sec   (7550 perm/sec)   p_kst 6.622000e-01   p_cons 2.400000e-01   p_joint 5.716000e-01

Outputting figure to mutsig2_images.part000000000155/SETD8.2_1091_10000_0.6622_0.24_0.5716.png
                gene_name: SETD8
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000155
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 155 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1703>
Subject: Job 9894129: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1703>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000156> was used as the working directory.
Started at Sat Oct  6 00:29:12 2012
Results reported at Sat Oct  6 03:41:24 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000156.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000156.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 156  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000156.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  11622.53 sec.
    Max Memory :      3598 MB
    Max Swap   :      6041 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
156
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 156
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 156: processing genes 13974 - 14063
Calculating significance of each gene.
Using projection method.
13974	SF3B14	5.080638e-01
13975	SF3B2	9.572153e-01
13976	SF3B3	3.187214e-01
In gene SF3B4 the following bins exceed PROBCAP:
    COAD-AA-3854	categ 6	N = 1261    n = 1	mu =   2.96e-07
13977	SF3B4	9.465796e-02
13978	SF3B5	1
13979	SF4	1
13980	SFI1	6.937928e-01
13981	SFMBT1	6.497023e-01
13982	SFMBT2	1.594379e-04
13983	SFN	1
13984	SFPQ	6.965727e-02
13985	SFRP1	1.553145e-01
13986	SFRP2	2.108780e-01
13987	SFRP4	3.318696e-01
13988	SFRP5	8.117056e-01
13989	SFRS1	1
13990	SFRS11	8.735850e-01
13991	SFRS12	1
13992	SFRS12IP1	1
13993	SFRS13A	1
13994	SFRS13B	1
13995	SFRS14	9.377431e-01
13996	SFRS15	2.355094e-01
13997	SFRS16	1
13998	SFRS18	4.818334e-01
13999	SFRS2	1
14000/18030 14000	SFRS2B	1
14001	SFRS2IP	6.627077e-01
14002	SFRS3	3.248696e-01
14003	SFRS4	5.990672e-01
14004	SFRS5	1
14005	SFRS6	1
14006	SFRS7	1
14007	SFRS8	1
14008	SFRS9	1
14009	SFT2D1	1.500932e-01
14010	SFT2D2	1
14011	SFTA2	1
14012	SFTA3	4.149028e-01
14013	SFTPB	2.744543e-01
In gene SFTPC the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 614     n = 1	mu =   2.96e-07
14014	SFTPC	3.379921e-01
14015	SFTPD	9.260046e-02
14016	SFXN1	7.156204e-01
14017	SFXN2	5.955927e-02
14018	SFXN3	6.799594e-01
14019	SFXN4	5.452664e-01
14020	SFXN5	5.652739e-01
14021	SGCA	7.746451e-01
14022	SGCB	1.177236e-02
14023	SGCD	9.299989e-02
14024	SGCE	4.130371e-02
14025	SGCG	3.572809e-04
14026	SGCZ	4.951050e-04
14027	SGEF	1
14028	SGIP1	4.538839e-01
14029	SGK1	5.109122e-01
14030	SGK196	7.692373e-01
14031	SGK2	8.036048e-02
14032	SGK223	6.780377e-01
14033	SGK269	9.612564e-01
14034	SGK3	5.624203e-01
14035	SGK494	7.643738e-01
14036	SGMS1	2.651199e-01
14037	SGMS2	4.615447e-02
14038	SGOL1	2.407406e-01
14039	SGOL2	4.014664e-01
14040	SGPL1	4.928543e-01
14041	SGPP1	4.311844e-01
14042	SGPP2	1.587177e-01
14043	SGSH	8.722260e-01
14044	SGSM1	6.695020e-01
14045	SGSM2	9.943956e-01
14046	SGSM3	1
14047	SGTA	6.339211e-01
14048	SGTB	5.151995e-01
14049	SH2B1	8.725055e-01
14050	SH2B2	1
14051	SH2B3	8.630586e-01
14052	SH2D1A	4.401501e-02
14053	SH2D1B	4.431009e-01
14054	SH2D2A	5.698783e-01
14055	SH2D3A	8.161562e-01
14056	SH2D3C	9.892547e-01
14057	SH2D4A	2.042780e-01
14058	SH2D4B	8.105668e-01
14059	SH2D5	1
14060	SH2D6	1
14061	SH2D7	6.995315e-01
14062	SH3BGR	2.112570e-01
14063	SH3BGRL	1
Done

Running MutSig 2:
Scatter job 156: processing genes 13974 - 14063
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SFMBT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.186093e-02	ci left: 2.775527e-01	ci right 2.953719e-01	k: 2864	n:10000
Cons ci ratio: 2.935912e-02	ci left: 6.311057e-01	ci right 6.500123e-01	k: 6406	n:10000
KS ci ratio: 8.585446e-02	ci left: 1.650429e-01	ci right 1.799484e-01	k: 1724	n:10000
SFMBT2   10000 perm   2 sec   (4416 perm/sec)   p_kst 1.724000e-01   p_cons 6.406000e-01   p_joint 2.864000e-01

Outputting figure to mutsig2_images.part000000000156/SFMBT2.15_2765_10000_0.1724_0.6406_0.2864.png
                gene_name: SFMBT2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 2 percent done.
SFPQ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
SFPQ   10000 perm   2 sec   (5055 perm/sec)   p_kst 1.100000e-03   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KS ci ratio: 7.682562e-01	ci left: 8.090923e-04	ci right 1.844697e-03	k: 25	n:20000
SFPQ   20000 perm   4 sec   (4567 perm/sec)   p_kst 1.250000e-03   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KS ci ratio: 6.193828e-01	ci left: 9.245853e-04	ci right 1.776719e-03	k: 39	n:30000
SFPQ   30000 perm   7 sec   (4388 perm/sec)   p_kst 1.300000e-03   p_cons 3.333333e-05   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
KS ci ratio: 5.188401e-01	ci left: 1.057713e-03	ci right 1.817636e-03	k: 56	n:40000
SFPQ   40000 perm   9 sec   (4272 perm/sec)   p_kst 1.400000e-03   p_cons 2.500000e-05   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
KS ci ratio: 4.648834e-01	ci left: 1.091526e-03	ci right 1.768490e-03	k: 70	n:50000
SFPQ   50000 perm   12 sec   (4179 perm/sec)   p_kst 1.400000e-03   p_cons 2.000000e-05   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KS ci ratio: 4.407404e-01	ci left: 1.027728e-03	ci right 1.622197e-03	k: 78	n:60000
SFPQ   60000 perm   15 sec   (4095 perm/sec)   p_kst 1.300000e-03   p_cons 1.666667e-05   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
KS ci ratio: 4.129356e-01	ci left: 1.021182e-03	ci right 1.564373e-03	k: 89	n:70000
SFPQ   70000 perm   17 sec   (4021 perm/sec)   p_kst 1.271429e-03   p_cons 1.428571e-05   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
KS ci ratio: 3.878879e-01	ci left: 1.028441e-03	ci right 1.533844e-03	k: 101	n:80000
SFPQ   80000 perm   20 sec   (3955 perm/sec)   p_kst 1.262500e-03   p_cons 1.250000e-05   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
KS ci ratio: 3.576048e-01	ci left: 1.095470e-03	ci right 1.582030e-03	k: 119	n:90000
SFPQ   90000 perm   23 sec   (3900 perm/sec)   p_kst 1.322222e-03   p_cons 1.111111e-05   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
KS ci ratio: 3.384078e-01	ci left: 1.113696e-03	ci right 1.576006e-03	k: 133	n:100000
SFPQ   100000 perm   26 sec   (3845 perm/sec)   p_kst 1.330000e-03   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
KS ci ratio: 3.156600e-01	ci left: 1.179367e-03	ci right 1.629400e-03	k: 153	n:110000
SFPQ   110000 perm   29 sec   (3790 perm/sec)   p_kst 1.390909e-03   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
KS ci ratio: 3.004360e-01	ci left: 1.204122e-03	ci right 1.637216e-03	k: 169	n:120000
SFPQ   120000 perm   32 sec   (3735 perm/sec)   p_kst 1.408333e-03   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
KS ci ratio: 2.911673e-01	ci left: 1.189834e-03	ci right 1.602153e-03	k: 180	n:130000
SFPQ   130000 perm   35 sec   (3683 perm/sec)   p_kst 1.384615e-03   p_cons 7.692308e-06   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
KS ci ratio: 2.769868e-01	ci left: 1.230901e-03	ci right 1.633061e-03	k: 199	n:140000
SFPQ   140000 perm   39 sec   (3632 perm/sec)   p_kst 1.421429e-03   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
KS ci ratio: 2.659135e-01	ci left: 1.254466e-03	ci right 1.645213e-03	k: 216	n:150000
SFPQ   150000 perm   42 sec   (3573 perm/sec)   p_kst 1.440000e-03   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
KS ci ratio: 2.588546e-01	ci left: 1.246129e-03	ci right 1.622309e-03	k: 228	n:160000
SFPQ   160000 perm   45 sec   (3522 perm/sec)   p_kst 1.425000e-03   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
KS ci ratio: 2.528555e-01	ci left: 1.233383e-03	ci right 1.595727e-03	k: 239	n:170000
SFPQ   170000 perm   49 sec   (3467 perm/sec)   p_kst 1.405882e-03   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
KS ci ratio: 2.472549e-01	ci left: 1.222143e-03	ci right 1.572010e-03	k: 250	n:180000
SFPQ   180000 perm   53 sec   (3420 perm/sec)   p_kst 1.388889e-03   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
KS ci ratio: 2.434102e-01	ci left: 1.197335e-03	ci right 1.533964e-03	k: 258	n:190000
SFPQ   190000 perm   56 sec   (3374 perm/sec)   p_kst 1.357895e-03   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
KS ci ratio: 2.392910e-01	ci left: 1.179745e-03	ci right 1.504984e-03	k: 267	n:200000
SFPQ   200000 perm   60 sec   (3322 perm/sec)   p_kst 1.335000e-03   p_cons 5.000000e-06   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
KS ci ratio: 2.336905e-01	ci left: 1.181804e-03	ci right 1.498884e-03	k: 280	n:210000
SFPQ   210000 perm   64 sec   (3279 perm/sec)   p_kst 1.333333e-03   p_cons 4.761905e-06   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
KS ci ratio: 2.276915e-01	ci left: 1.192329e-03	ci right 1.502866e-03	k: 295	n:220000
SFPQ   220000 perm   68 sec   (3237 perm/sec)   p_kst 1.340909e-03   p_cons 4.545455e-06   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
KS ci ratio: 2.228507e-01	ci left: 1.193821e-03	ci right 1.497230e-03	k: 308	n:230000
SFPQ   230000 perm   72 sec   (3196 perm/sec)   p_kst 1.339130e-03   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
KS ci ratio: 2.162974e-01	ci left: 1.218894e-03	ci right 1.518356e-03	k: 327	n:240000
SFPQ   240000 perm   76 sec   (3155 perm/sec)   p_kst 1.362500e-03   p_cons 4.166667e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 1.306641e+00	ci left: 1.381543e-05	ci right 6.305178e-05	k: 8	n:250000
KS ci ratio: 2.118239e-01	ci left: 1.223137e-03	ci right 1.516619e-03	k: 341	n:250000
SFPQ   250000 perm   80 sec   (3119 perm/sec)   p_kst 1.364000e-03   p_cons 3.200000e-05   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 1.181897e+00	ci left: 1.844395e-05	ci right 7.073100e-05	k: 10	n:260000
KS ci ratio: 2.090924e-01	ci left: 1.208883e-03	ci right 1.494726e-03	k: 350	n:260000
SFPQ   260000 perm   84 sec   (3083 perm/sec)   p_kst 1.346154e-03   p_cons 3.846154e-05   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 1.131579e+00	ci left: 2.033780e-05	ci right 7.289527e-05	k: 11	n:270000
KS ci ratio: 2.050431e-01	ci left: 1.213273e-03	ci right 1.493902e-03	k: 364	n:270000
SFPQ   270000 perm   89 sec   (3046 perm/sec)   p_kst 1.348148e-03   p_cons 4.074074e-05   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 1.131580e+00	ci left: 1.961144e-05	ci right 7.029190e-05	k: 11	n:280000
KS ci ratio: 2.014865e-01	ci left: 1.214008e-03	ci right 1.489337e-03	k: 377	n:280000
SFPQ   280000 perm   93 sec   (3010 perm/sec)   p_kst 1.346429e-03   p_cons 3.928571e-05   p_joint 0

Joint ci ratio: 3.137662e-01	ci left: 4.536698e-04	ci right 6.255333e-04	k: 155	n:290000
Cons ci ratio: 1.087186e+00	ci left: 2.138147e-05	ci right 7.228021e-05	k: 12	n:290000
KS ci ratio: 1.981089e-01	ci left: 1.214730e-03	ci right 1.485048e-03	k: 390	n:290000
SFPQ   290000 perm   97 sec   (2977 perm/sec)   p_kst 1.344828e-03   p_cons 4.137931e-05   p_joint 5.344828e-04

Joint ci ratio: 3.127677e-01	ci left: 4.416183e-04	ci right 6.082774e-04	k: 156	n:300000
Cons ci ratio: 1.087187e+00	ci left: 2.066875e-05	ci right 6.987091e-05	k: 12	n:300000
KS ci ratio: 1.941750e-01	ci left: 1.224954e-03	ci right 1.491494e-03	k: 406	n:300000
SFPQ   300000 perm   102 sec   (2943 perm/sec)   p_kst 1.353333e-03   p_cons 4.000000e-05   p_joint 5.200000e-04

Joint ci ratio: 3.088585e-01	ci left: 4.392694e-04	ci right 6.025622e-04	k: 160	n:310000
Cons ci ratio: 1.087188e+00	ci left: 2.000201e-05	ci right 6.761704e-05	k: 12	n:310000
KS ci ratio: 1.904665e-01	ci left: 1.234568e-03	ci right 1.497476e-03	k: 422	n:310000
SFPQ   310000 perm   107 sec   (2909 perm/sec)   p_kst 1.361290e-03   p_cons 3.870968e-05   p_joint 5.161290e-04

Joint ci ratio: 2.988164e-01	ci left: 4.572983e-04	ci right 6.207180e-04	k: 171	n:320000
Cons ci ratio: 1.047640e+00	ci left: 2.163127e-05	ci right 6.946899e-05	k: 13	n:320000
KS ci ratio: 1.867499e-01	ci left: 1.246606e-03	ci right 1.506309e-03	k: 439	n:320000
SFPQ   320000 perm   111 sec   (2876 perm/sec)   p_kst 1.371875e-03   p_cons 4.062500e-05   p_joint 5.343750e-04

Joint ci ratio: 2.945658e-01	ci left: 4.574647e-04	ci right 6.181843e-04	k: 176	n:330000
Cons ci ratio: 1.047640e+00	ci left: 2.097577e-05	ci right 6.736389e-05	k: 13	n:330000
KS ci ratio: 1.830421e-01	ci left: 1.260851e-03	ci right 1.517729e-03	k: 457	n:330000
SFPQ   330000 perm   116 sec   (2844 perm/sec)   p_kst 1.384848e-03   p_cons 3.939394e-05   p_joint 5.333333e-04

Joint ci ratio: 3.023594e-01	ci left: 4.195195e-04	ci right 5.715580e-04	k: 167	n:340000
Cons ci ratio: 1.385911e+00	ci left: 8.277577e-06	ci right 4.241917e-05	k: 7	n:340000
KS ci ratio: 1.808836e-01	ci left: 1.254647e-03	ci right 1.506916e-03	k: 468	n:340000
SFPQ   340000 perm   121 sec   (2812 perm/sec)   p_kst 1.376471e-03   p_cons 2.058824e-05   p_joint 4.911765e-04

Joint ci ratio: 2.979580e-01	ci left: 4.207433e-04	ci right 5.705860e-04	k: 172	n:350000
Cons ci ratio: 1.385911e+00	ci left: 8.041074e-06	ci right 4.120721e-05	k: 7	n:350000
KS ci ratio: 1.787997e-01	ci left: 1.248813e-03	ci right 1.496704e-03	k: 479	n:350000
SFPQ   350000 perm   126 sec   (2780 perm/sec)   p_kst 1.368571e-03   p_cons 2.000000e-05   p_joint 4.914286e-04

Joint ci ratio: 3.098339e-01	ci left: 3.756956e-04	ci right 5.158835e-04	k: 159	n:360000
Cons ci ratio: 1.385912e+00	ci left: 7.817710e-06	ci right 4.006257e-05	k: 7	n:360000
KS ci ratio: 1.775117e-01	ci left: 1.232700e-03	ci right 1.475440e-03	k: 486	n:360000
SFPQ   360000 perm   131 sec   (2751 perm/sec)   p_kst 1.350000e-03   p_cons 1.944444e-05   p_joint 4.416667e-04

Joint ci ratio: 3.069700e-01	ci left: 3.730223e-04	ci right 5.106744e-04	k: 162	n:370000
Cons ci ratio: 1.306649e+00	ci left: 9.334726e-06	ci right 4.260277e-05	k: 8	n:370000
KS ci ratio: 1.757177e-01	ci left: 1.225216e-03	ci right 1.463785e-03	k: 496	n:370000
SFPQ   370000 perm   136 sec   (2723 perm/sec)   p_kst 1.340541e-03   p_cons 2.162162e-05   p_joint 4.378378e-04

Joint ci ratio: 3.158182e-01	ci left: 3.413710e-04	ci right 4.717084e-04	k: 153	n:380000
Cons ci ratio: 1.306649e+00	ci left: 9.089074e-06	ci right 4.148165e-05	k: 8	n:380000
KS ci ratio: 1.741490e-01	ci left: 1.215620e-03	ci right 1.449985e-03	k: 505	n:380000
SFPQ   380000 perm   141 sec   (2695 perm/sec)   p_kst 1.328947e-03   p_cons 2.105263e-05   p_joint 4.026316e-04

Joint ci ratio: 3.127867e-01	ci left: 3.397035e-04	ci right 4.679105e-04	k: 156	n:390000
Cons ci ratio: 1.306650e+00	ci left: 8.856020e-06	ci right 4.041803e-05	k: 8	n:390000
KS ci ratio: 1.716233e-01	ci left: 1.221248e-03	ci right 1.452930e-03	k: 520	n:390000
SFPQ   390000 perm   146 sec   (2666 perm/sec)   p_kst 1.333333e-03   p_cons 2.051282e-05   p_joint 4.000000e-04

Joint ci ratio: 3.088767e-01	ci left: 3.404310e-04	ci right 4.669902e-04	k: 160	n:400000
Cons ci ratio: 1.239596e+00	ci left: 1.028848e-05	ci right 4.271158e-05	k: 9	n:400000
KS ci ratio: 1.685758e-01	ci left: 1.236195e-03	ci right 1.466126e-03	k: 539	n:400000
SFPQ   400000 perm   152 sec   (2639 perm/sec)   p_kst 1.347500e-03   p_cons 2.250000e-05   p_joint 4.000000e-04

Joint ci ratio: 3.079231e-01	ci left: 3.343779e-04	ci right 4.582277e-04	k: 161	n:410000
Cons ci ratio: 1.239596e+00	ci left: 1.003754e-05	ci right 4.166984e-05	k: 9	n:410000
KS ci ratio: 1.653891e-01	ci left: 1.255124e-03	ci right 1.483723e-03	k: 560	n:410000
SFPQ   410000 perm   157 sec   (2608 perm/sec)   p_kst 1.365854e-03   p_cons 2.195122e-05   p_joint 3.926829e-04

Joint ci ratio: 3.060404e-01	ci left: 3.308116e-04	ci right 4.524452e-04	k: 163	n:420000
Cons ci ratio: 1.239597e+00	ci left: 9.798553e-06	ci right 4.067771e-05	k: 9	n:420000
KS ci ratio: 1.640791e-01	ci left: 1.245785e-03	ci right 1.470708e-03	k: 569	n:420000
SFPQ   420000 perm   163 sec   (2581 perm/sec)   p_kst 1.354762e-03   p_cons 2.142857e-05   p_joint 3.880952e-04

Joint ci ratio: 2.997099e-01	ci left: 3.381607e-04	ci right 4.594352e-04	k: 170	n:430000
Cons ci ratio: 1.181908e+00	ci left: 1.115212e-05	ci right 4.276785e-05	k: 10	n:430000
KS ci ratio: 1.609999e-01	ci left: 1.265896e-03	ci right 1.489746e-03	k: 591	n:430000
SFPQ   430000 perm   168 sec   (2554 perm/sec)   p_kst 1.374419e-03   p_cons 2.325581e-05   p_joint 3.953488e-04

Joint ci ratio: 3.014802e-01	ci left: 3.262722e-04	ci right 4.441068e-04	k: 168	n:440000
Cons ci ratio: 1.181908e+00	ci left: 1.089866e-05	ci right 4.179587e-05	k: 10	n:440000
KS ci ratio: 1.591292e-01	ci left: 1.267670e-03	ci right 1.488980e-03	k: 605	n:440000
SFPQ   440000 perm   174 sec   (2528 perm/sec)   p_kst 1.375000e-03   p_cons 2.272727e-05   p_joint 3.818182e-04

Joint ci ratio: 2.971166e-01	ci left: 3.292988e-04	ci right 4.461805e-04	k: 173	n:450000
Cons ci ratio: 1.181909e+00	ci left: 1.065647e-05	ci right 4.086708e-05	k: 10	n:450000
KS ci ratio: 1.575770e-01	ci left: 1.265109e-03	ci right 1.483614e-03	k: 617	n:450000
SFPQ   450000 perm   180 sec   (2503 perm/sec)   p_kst 1.371111e-03   p_cons 2.222222e-05   p_joint 3.844444e-04

Joint ci ratio: 2.954243e-01	ci left: 3.261647e-04	ci right 4.411511e-04	k: 175	n:460000
Cons ci ratio: 1.181909e+00	ci left: 1.042481e-05	ci right 3.997867e-05	k: 10	n:460000
KS ci ratio: 1.561936e-01	ci left: 1.260581e-03	ci right 1.476213e-03	k: 628	n:460000
SFPQ   460000 perm   186 sec   (2479 perm/sec)   p_kst 1.365217e-03   p_cons 2.173913e-05   p_joint 3.804348e-04

Joint ci ratio: 2.937605e-01	ci left: 3.231659e-04	ci right 4.363339e-04	k: 177	n:470000
Cons ci ratio: 1.181909e+00	ci left: 1.020300e-05	ci right 3.912807e-05	k: 10	n:470000
KS ci ratio: 1.552106e-01	ci left: 1.250117e-03	ci right 1.462489e-03	k: 636	n:470000
SFPQ   470000 perm   191 sec   (2455 perm/sec)   p_kst 1.353191e-03   p_cons 2.127660e-05   p_joint 3.765957e-04

Joint ci ratio: 3.137998e-01	ci left: 2.740880e-04	ci right 3.779332e-04	k: 155	n:480000
Cons ci ratio: 8.992909e-01	ci left: 2.222502e-05	ci right 5.926552e-05	k: 18	n:480000
KS ci ratio: 1.538880e-01	ci left: 1.246103e-03	ci right 1.455823e-03	k: 647	n:480000
SFPQ   480000 perm   197 sec   (2432 perm/sec)   p_kst 1.347917e-03   p_cons 3.750000e-05   p_joint 3.229167e-04

Joint ci ratio: 3.266183e-01	ci left: 2.459713e-04	ci right 3.437705e-04	k: 143	n:490000
Cons ci ratio: 8.992913e-01	ci left: 2.177145e-05	ci right 5.805603e-05	k: 18	n:490000
KS ci ratio: 1.525986e-01	ci left: 1.242261e-03	ci right 1.449422e-03	k: 658	n:490000
SFPQ   490000 perm   203 sec   (2409 perm/sec)   p_kst 1.342857e-03   p_cons 3.673469e-05   p_joint 2.918367e-04

Joint ci ratio: 3.266193e-01	ci left: 2.410517e-04	ci right 3.368953e-04	k: 143	n:500000
Cons ci ratio: 8.992917e-01	ci left: 2.133602e-05	ci right 5.689493e-05	k: 18	n:500000
KS ci ratio: 1.507788e-01	ci left: 1.248201e-03	ci right 1.453647e-03	k: 674	n:500000
SFPQ   500000 perm   209 sec   (2387 perm/sec)   p_kst 1.348000e-03   p_cons 3.600000e-05   p_joint 2.860000e-04

Joint ci ratio: 3.232692e-01	ci left: 2.417278e-04	ci right 3.366500e-04	k: 146	n:510000
Cons ci ratio: 8.992920e-01	ci left: 2.091766e-05	ci right 5.577935e-05	k: 18	n:510000
KS ci ratio: 1.496747e-01	ci left: 1.242597e-03	ci right 1.445489e-03	k: 684	n:510000
SFPQ   510000 perm   216 sec   (2365 perm/sec)   p_kst 1.341176e-03   p_cons 3.529412e-05   p_joint 2.862745e-04

Joint ci ratio: 3.200202e-01	ci left: 2.423827e-04	ci right 3.364094e-04	k: 149	n:520000
Cons ci ratio: 8.992924e-01	ci left: 2.051540e-05	ci right 5.470668e-05	k: 18	n:520000
KS ci ratio: 1.483809e-01	ci left: 1.240917e-03	ci right 1.441628e-03	k: 696	n:520000
SFPQ   520000 perm   222 sec   (2343 perm/sec)   p_kst 1.338462e-03   p_cons 3.461538e-05   p_joint 2.865385e-04

Joint ci ratio: 3.168672e-01	ci left: 2.430175e-04	ci right 3.361733e-04	k: 152	n:530000
Cons ci ratio: 8.765213e-01	ci left: 2.158361e-05	ci right 5.598218e-05	k: 19	n:530000
KS ci ratio: 1.470163e-01	ci left: 1.241126e-03	ci right 1.439861e-03	k: 709	n:530000
SFPQ   530000 perm   228 sec   (2322 perm/sec)   p_kst 1.337736e-03   p_cons 3.584906e-05   p_joint 2.867925e-04

Joint ci ratio: 3.158373e-01	ci left: 2.402219e-04	ci right 3.319463e-04	k: 153	n:540000
Cons ci ratio: 8.765216e-01	ci left: 2.118391e-05	ci right 5.494548e-05	k: 19	n:540000
KS ci ratio: 1.457896e-01	ci left: 1.239550e-03	ci right 1.436233e-03	k: 721	n:540000
SFPQ   540000 perm   235 sec   (2300 perm/sec)   p_kst 1.335185e-03   p_cons 3.518519e-05   p_joint 2.833333e-04

Joint ci ratio: 3.128051e-01	ci left: 2.408786e-04	ci right 3.317944e-04	k: 156	n:550000
Cons ci ratio: 8.553970e-01	ci left: 2.221199e-05	ci right 5.616013e-05	k: 20	n:550000
KS ci ratio: 1.444946e-01	ci left: 1.239791e-03	ci right 1.434614e-03	k: 734	n:550000
SFPQ   550000 perm   241 sec   (2278 perm/sec)   p_kst 1.334545e-03   p_cons 3.636364e-05   p_joint 2.836364e-04

Joint ci ratio: 3.108318e-01	ci left: 2.398692e-04	ci right 3.297195e-04	k: 158	n:560000
Cons ci ratio: 8.553973e-01	ci left: 2.181535e-05	ci right 5.515728e-05	k: 20	n:560000
KS ci ratio: 1.426617e-01	ci left: 1.250362e-03	ci right 1.444142e-03	k: 753	n:560000
SFPQ   560000 perm   248 sec   (2258 perm/sec)   p_kst 1.344643e-03   p_cons 3.571429e-05   p_joint 2.821429e-04

Joint ci ratio: 3.060563e-01	ci left: 2.437541e-04	ci right 3.333835e-04	k: 163	n:570000
Cons ci ratio: 8.173593e-01	ci left: 2.418837e-05	ci right 5.843497e-05	k: 22	n:570000
KS ci ratio: 1.412633e-01	ci left: 1.253807e-03	ci right 1.446055e-03	k: 768	n:570000
SFPQ   570000 perm   255 sec   (2238 perm/sec)   p_kst 1.347368e-03   p_cons 3.859649e-05   p_joint 2.859649e-04

Joint ci ratio: 3.079410e-01	ci left: 2.363687e-04	ci right 3.239227e-04	k: 161	n:580000
Cons ci ratio: 8.173596e-01	ci left: 2.377133e-05	ci right 5.742748e-05	k: 22	n:580000
KS ci ratio: 1.399947e-01	ci left: 1.255478e-03	ci right 1.446110e-03	k: 782	n:580000
SFPQ   580000 perm   261 sec   (2219 perm/sec)   p_kst 1.348276e-03   p_cons 3.793103e-05   p_joint 2.775862e-04

Joint ci ratio: 3.042079e-01	ci left: 2.386215e-04	ci right 3.257311e-04	k: 165	n:590000
Cons ci ratio: 8.173599e-01	ci left: 2.336842e-05	ci right 5.645414e-05	k: 22	n:590000
KS ci ratio: 1.378960e-01	ci left: 1.273464e-03	ci right 1.463690e-03	k: 806	n:590000
SFPQ   590000 perm   269 sec   (2196 perm/sec)   p_kst 1.366102e-03   p_cons 3.728814e-05   p_joint 2.796610e-04

Joint ci ratio: 3.023920e-01	ci left: 2.377242e-04	ci right 3.238885e-04	k: 167	n:600000
Cons ci ratio: 8.173602e-01	ci left: 2.297894e-05	ci right 5.551325e-05	k: 22	n:600000
KS ci ratio: 1.374718e-01	ci left: 1.260285e-03	ci right 1.447916e-03	k: 811	n:600000
SFPQ   600000 perm   276 sec   (2177 perm/sec)   p_kst 1.351667e-03   p_cons 3.666667e-05   p_joint 2.783333e-04

Joint ci ratio: 3.006081e-01	ci left: 2.368577e-04	ci right 3.221048e-04	k: 169	n:610000
Cons ci ratio: 8.173604e-01	ci left: 2.260224e-05	ci right 5.460321e-05	k: 22	n:610000
KS ci ratio: 1.363018e-01	ci left: 1.261790e-03	ci right 1.447916e-03	k: 825	n:610000
SFPQ   610000 perm   282 sec   (2160 perm/sec)   p_kst 1.352459e-03   p_cons 3.606557e-05   p_joint 2.770492e-04

Joint ci ratio: 2.873850e-01	ci left: 2.569422e-04	ci right 3.446123e-04	k: 185	n:620000
Cons ci ratio: 8.173607e-01	ci left: 2.223768e-05	ci right 5.372252e-05	k: 22	n:620000
KS ci ratio: 1.392901e-01	ci left: 1.186929e-03	ci right 1.366170e-03	k: 790	n:620000
SFPQ   620000 perm   289 sec   (2142 perm/sec)   p_kst 1.274194e-03   p_cons 3.548387e-05   p_joint 2.983871e-04

Joint ci ratio: 2.850950e-01	ci left: 2.572839e-04	ci right 3.442450e-04	k: 188	n:630000
Cons ci ratio: 8.173609e-01	ci left: 2.188470e-05	ci right 5.286979e-05	k: 22	n:630000
KS ci ratio: 1.383318e-01	ci left: 1.184943e-03	ci right 1.362551e-03	k: 801	n:630000
SFPQ   630000 perm   297 sec   (2125 perm/sec)   p_kst 1.271429e-03   p_cons 3.492063e-05   p_joint 2.984127e-04

Joint ci ratio: 2.835987e-01	ci left: 2.561660e-04	ci right 3.422135e-04	k: 190	n:640000
Cons ci ratio: 8.173612e-01	ci left: 2.154275e-05	ci right 5.204370e-05	k: 22	n:640000
KS ci ratio: 1.373929e-01	ci left: 1.183023e-03	ci right 1.359041e-03	k: 812	n:640000
SFPQ   640000 perm   304 sec   (2106 perm/sec)   p_kst 1.268750e-03   p_cons 3.437500e-05   p_joint 2.968750e-04

Joint ci ratio: 2.799576e-01	ci left: 2.593738e-04	ci right 3.451830e-04	k: 195	n:650000
Cons ci ratio: 8.001513e-01	ci left: 2.243094e-05	ci right 5.309383e-05	k: 23	n:650000
KS ci ratio: 1.363901e-01	ci left: 1.182652e-03	ci right 1.357227e-03	k: 824	n:650000
SFPQ   650000 perm   311 sec   (2090 perm/sec)   p_kst 1.267692e-03   p_cons 3.538462e-05   p_joint 3.000000e-04

Joint ci ratio: 2.778393e-01	ci left: 2.596715e-04	ci right 3.448155e-04	k: 198	n:660000
Cons ci ratio: 8.001515e-01	ci left: 2.209107e-05	ci right 5.228938e-05	k: 23	n:660000
KS ci ratio: 1.352473e-01	ci left: 1.185224e-03	ci right 1.358595e-03	k: 838	n:660000
SFPQ   660000 perm   318 sec   (2073 perm/sec)   p_kst 1.269697e-03   p_cons 3.484848e-05   p_joint 3.000000e-04

Joint ci ratio: 2.771443e-01	ci left: 2.571845e-04	ci right 3.412652e-04	k: 199	n:670000
Cons ci ratio: 8.001517e-01	ci left: 2.176135e-05	ci right 5.150895e-05	k: 23	n:670000
KS ci ratio: 1.342115e-01	ci left: 1.186283e-03	ci right 1.358374e-03	k: 851	n:670000
SFPQ   670000 perm   326 sec   (2057 perm/sec)   p_kst 1.270149e-03   p_cons 3.432836e-05   p_joint 2.970149e-04

Joint ci ratio: 2.744135e-01	ci left: 2.588780e-04	ci right 3.425346e-04	k: 203	n:680000
Cons ci ratio: 8.001519e-01	ci left: 2.144133e-05	ci right 5.075147e-05	k: 23	n:680000
KS ci ratio: 1.335085e-01	ci left: 1.181630e-03	ci right 1.352076e-03	k: 860	n:680000
SFPQ   680000 perm   333 sec   (2041 perm/sec)   p_kst 1.264706e-03   p_cons 3.382353e-05   p_joint 2.985294e-04

Joint ci ratio: 2.730784e-01	ci left: 2.578258e-04	ci right 3.406674e-04	k: 205	n:690000
Cons ci ratio: 8.001522e-01	ci left: 2.113059e-05	ci right 5.001595e-05	k: 23	n:690000
KS ci ratio: 1.327402e-01	ci left: 1.178515e-03	ci right 1.347456e-03	k: 870	n:690000
SFPQ   690000 perm   341 sec   (2025 perm/sec)   p_kst 1.260870e-03   p_cons 3.333333e-05   p_joint 2.971014e-04

Joint ci ratio: 2.711114e-01	ci left: 2.581359e-04	ci right 3.403781e-04	k: 208	n:700000
Cons ci ratio: 8.001524e-01	ci left: 2.082872e-05	ci right 4.930144e-05	k: 23	n:700000
KS ci ratio: 1.316859e-01	ci left: 1.181017e-03	ci right 1.348868e-03	k: 884	n:700000
SFPQ   700000 perm   348 sec   (2010 perm/sec)   p_kst 1.262857e-03   p_cons 3.285714e-05   p_joint 2.971429e-04

Joint ci ratio: 2.704655e-01	ci left: 2.558130e-04	ci right 3.370879e-04	k: 209	n:710000
Cons ci ratio: 8.001526e-01	ci left: 2.053536e-05	ci right 4.860706e-05	k: 23	n:710000
KS ci ratio: 1.309484e-01	ci left: 1.178005e-03	ci right 1.344417e-03	k: 894	n:710000
SFPQ   710000 perm   356 sec   (1994 perm/sec)   p_kst 1.259155e-03   p_cons 3.239437e-05   p_joint 2.943662e-04

Joint ci ratio: 2.698242e-01	ci left: 2.535548e-04	ci right 3.338890e-04	k: 210	n:720000
Cons ci ratio: 8.001528e-01	ci left: 2.025014e-05	ci right 4.793197e-05	k: 23	n:720000
KS ci ratio: 1.302232e-01	ci left: 1.175079e-03	ci right 1.340087e-03	k: 904	n:720000
SFPQ   720000 perm   364 sec   (1978 perm/sec)   p_kst 1.255556e-03   p_cons 3.194444e-05   p_joint 2.916667e-04

Joint ci ratio: 2.711131e-01	ci left: 2.475274e-04	ci right 3.263902e-04	k: 208	n:730000
Cons ci ratio: 8.001529e-01	ci left: 1.997274e-05	ci right 4.727537e-05	k: 23	n:730000
KS ci ratio: 1.295099e-01	ci left: 1.172235e-03	ci right 1.335873e-03	k: 914	n:730000
SFPQ   730000 perm   372 sec   (1963 perm/sec)   p_kst 1.252055e-03   p_cons 3.150685e-05   p_joint 2.849315e-04

Joint ci ratio: 2.724205e-01	ci left: 2.416638e-04	ci right 3.190933e-04	k: 206	n:740000
Cons ci ratio: 7.839862e-01	ci left: 2.078018e-05	ci right 4.825651e-05	k: 24	n:740000
KS ci ratio: 1.285995e-01	ci left: 1.173395e-03	ci right 1.335955e-03	k: 927	n:740000
SFPQ   740000 perm   380 sec   (1946 perm/sec)   p_kst 1.252703e-03   p_cons 3.243243e-05   p_joint 2.783784e-04

Joint ci ratio: 2.988627e-01	ci left: 1.951098e-04	ci right 2.648462e-04	k: 171	n:750000
Cons ci ratio: 7.839864e-01	ci left: 2.050311e-05	ci right 4.761309e-05	k: 24	n:750000
KS ci ratio: 1.277761e-01	ci left: 1.173237e-03	ci right 1.334655e-03	k: 939	n:750000
SFPQ   750000 perm   388 sec   (1932 perm/sec)   p_kst 1.252000e-03   p_cons 3.200000e-05   p_joint 2.280000e-04

Joint ci ratio: 2.962898e-01	ci left: 1.961953e-04	ci right 2.656026e-04	k: 174	n:760000
Cons ci ratio: 7.687616e-01	ci left: 2.128785e-05	ci right 4.855874e-05	k: 25	n:760000
KS ci ratio: 1.269015e-01	ci left: 1.174360e-03	ci right 1.334744e-03	k: 952	n:760000
SFPQ   760000 perm   396 sec   (1918 perm/sec)   p_kst 1.252632e-03   p_cons 3.289474e-05   p_joint 2.289474e-04

Joint ci ratio: 2.954472e-01	ci left: 1.948496e-04	ci right 2.635480e-04	k: 175	n:770000
Cons ci ratio: 7.687618e-01	ci left: 2.101138e-05	ci right 4.792811e-05	k: 25	n:770000
KS ci ratio: 1.259794e-01	ci left: 1.176715e-03	ci right 1.336166e-03	k: 966	n:770000
SFPQ   770000 perm   404 sec   (1904 perm/sec)   p_kst 1.254545e-03   p_cons 3.246753e-05   p_joint 2.272727e-04

Joint ci ratio: 2.937827e-01	ci left: 1.947262e-04	ci right 2.629223e-04	k: 177	n:780000
Cons ci ratio: 7.687619e-01	ci left: 2.074200e-05	ci right 4.731365e-05	k: 25	n:780000
KS ci ratio: 1.250772e-01	ci left: 1.179014e-03	ci right 1.337548e-03	k: 980	n:780000
SFPQ   780000 perm   413 sec   (1890 perm/sec)   p_kst 1.256410e-03   p_cons 3.205128e-05   p_joint 2.269231e-04

Joint ci ratio: 2.929612e-01	ci left: 1.934339e-04	ci right 2.609529e-04	k: 178	n:790000
Cons ci ratio: 7.687621e-01	ci left: 2.047945e-05	ci right 4.671475e-05	k: 25	n:790000
KS ci ratio: 1.244447e-01	ci left: 1.176353e-03	ci right 1.333670e-03	k: 990	n:790000
SFPQ   790000 perm   421 sec   (1876 perm/sec)   p_kst 1.253165e-03   p_cons 3.164557e-05   p_joint 2.253165e-04

Joint ci ratio: 2.929616e-01	ci left: 1.910160e-04	ci right 2.576910e-04	k: 178	n:800000
Cons ci ratio: 7.687623e-01	ci left: 2.022345e-05	ci right 4.613082e-05	k: 25	n:800000
KS ci ratio: 1.238217e-01	ci left: 1.173760e-03	ci right 1.329887e-03	k: 1000	n:800000
SFPQ   800000 perm   429 sec   (1863 perm/sec)   p_kst 1.250000e-03   p_cons 3.125000e-05   p_joint 2.225000e-04

Joint ci ratio: 2.921469e-01	ci left: 1.898017e-04	ci right 2.558346e-04	k: 179	n:810000
Cons ci ratio: 7.687624e-01	ci left: 1.997378e-05	ci right 4.556131e-05	k: 25	n:810000
KS ci ratio: 1.230862e-01	ci left: 1.173627e-03	ci right 1.328741e-03	k: 1012	n:810000
SFPQ   810000 perm   438 sec   (1849 perm/sec)   p_kst 1.249383e-03   p_cons 3.086420e-05   p_joint 2.209877e-04

Joint ci ratio: 2.897422e-01	ci left: 1.908786e-04	ci right 2.566394e-04	k: 182	n:820000
Cons ci ratio: 7.543915e-01	ci left: 2.071237e-05	ci right 4.645822e-05	k: 26	n:820000
KS ci ratio: 1.225433e-01	ci left: 1.169953e-03	ci right 1.323849e-03	k: 1021	n:820000
SFPQ   820000 perm   447 sec   (1836 perm/sec)   p_kst 1.245122e-03   p_cons 3.170732e-05   p_joint 2.219512e-04

Joint ci ratio: 2.980008e-01	ci left: 1.774184e-04	ci right 2.406141e-04	k: 172	n:830000
Cons ci ratio: 7.407974e-01	ci left: 2.143766e-05	ci right 4.732927e-05	k: 27	n:830000
KS ci ratio: 1.216536e-01	ci left: 1.173377e-03	ci right 1.326523e-03	k: 1036	n:830000
SFPQ   830000 perm   455 sec   (1823 perm/sec)   p_kst 1.248193e-03   p_cons 3.253012e-05   p_joint 2.072289e-04

Joint ci ratio: 2.937851e-01	ci left: 1.808169e-04	ci right 2.441424e-04	k: 177	n:840000
Cons ci ratio: 7.279127e-01	ci left: 2.214987e-05	ci right 4.817559e-05	k: 28	n:840000
KS ci ratio: 1.209558e-01	ci left: 1.173261e-03	ci right 1.325450e-03	k: 1048	n:840000
SFPQ   840000 perm   464 sec   (1810 perm/sec)   p_kst 1.247619e-03   p_cons 3.333333e-05   p_joint 2.107143e-04

Joint ci ratio: 2.937855e-01	ci left: 1.786897e-04	ci right 2.412702e-04	k: 177	n:850000
Cons ci ratio: 7.279129e-01	ci left: 2.188928e-05	ci right 4.760882e-05	k: 28	n:850000
KS ci ratio: 1.203835e-01	ci left: 1.170867e-03	ci right 1.321977e-03	k: 1058	n:850000
SFPQ   850000 perm   473 sec   (1797 perm/sec)   p_kst 1.244706e-03   p_cons 3.294118e-05   p_joint 2.082353e-04

Joint ci ratio: 2.980019e-01	ci left: 1.712293e-04	ci right 2.322207e-04	k: 172	n:860000
Cons ci ratio: 7.156779e-01	ci left: 2.258355e-05	ci right 4.842852e-05	k: 29	n:860000
KS ci ratio: 1.195397e-01	ci left: 1.174171e-03	ci right 1.324570e-03	k: 1073	n:860000
SFPQ   860000 perm   482 sec   (1783 perm/sec)   p_kst 1.247674e-03   p_cons 3.372093e-05   p_joint 2.000000e-04

Joint ci ratio: 2.980023e-01	ci left: 1.692611e-04	ci right 2.295515e-04	k: 172	n:870000
Cons ci ratio: 7.156781e-01	ci left: 2.232397e-05	ci right 4.787188e-05	k: 29	n:870000
KS ci ratio: 1.188775e-01	ci left: 1.174057e-03	ci right 1.323549e-03	k: 1085	n:870000
SFPQ   870000 perm   491 sec   (1770 perm/sec)   p_kst 1.247126e-03   p_cons 3.333333e-05   p_joint 1.977011e-04

Joint ci ratio: 2.937865e-01	ci left: 1.725979e-04	ci right 2.330452e-04	k: 177	n:880000
Cons ci ratio: 7.040400e-01	ci left: 2.300111e-05	ci right 4.866654e-05	k: 30	n:880000
KS ci ratio: 1.182801e-01	ci left: 1.172844e-03	ci right 1.321379e-03	k: 1096	n:880000
SFPQ   880000 perm   501 sec   (1757 perm/sec)   p_kst 1.245455e-03   p_cons 3.409091e-05   p_joint 2.011364e-04

Joint ci ratio: 2.929649e-01	ci left: 1.716995e-04	ci right 2.316328e-04	k: 178	n:890000
Cons ci ratio: 7.040401e-01	ci left: 2.274267e-05	ci right 4.811973e-05	k: 30	n:890000
KS ci ratio: 1.175854e-01	ci left: 1.173842e-03	ci right 1.321570e-03	k: 1109	n:890000
SFPQ   890000 perm   510 sec   (1745 perm/sec)   p_kst 1.246067e-03   p_cons 3.370787e-05   p_joint 2.000000e-04

Joint ci ratio: 2.921502e-01	ci left: 1.708213e-04	ci right 2.302516e-04	k: 179	n:900000
Cons ci ratio: 7.040403e-01	ci left: 2.248997e-05	ci right 4.758507e-05	k: 30	n:900000
KS ci ratio: 1.166949e-01	ci left: 1.179135e-03	ci right 1.326327e-03	k: 1126	n:900000
SFPQ   900000 perm   519 sec   (1733 perm/sec)   p_kst 1.251111e-03   p_cons 3.333333e-05   p_joint 1.988889e-04

Joint ci ratio: 2.905405e-01	ci left: 1.709813e-04	ci right 2.300793e-04	k: 181	n:910000
Cons ci ratio: 7.040404e-01	ci left: 2.224283e-05	ci right 4.706216e-05	k: 30	n:910000
KS ci ratio: 1.160786e-01	ci left: 1.178980e-03	ci right 1.325323e-03	k: 1138	n:910000
SFPQ   910000 perm   528 sec   (1722 perm/sec)   p_kst 1.250549e-03   p_cons 3.296703e-05   p_joint 1.989011e-04

Joint ci ratio: 2.873991e-01	ci left: 1.731556e-04	ci right 2.322404e-04	k: 185	n:920000
Cons ci ratio: 6.929522e-01	ci left: 2.289467e-05	ci right 4.782795e-05	k: 31	n:920000
KS ci ratio: 1.155222e-01	ci left: 1.177775e-03	ci right 1.323220e-03	k: 1149	n:920000
SFPQ   920000 perm   538 sec   (1711 perm/sec)   p_kst 1.248913e-03   p_cons 3.369565e-05   p_joint 2.010870e-04

Joint ci ratio: 2.866298e-01	ci left: 1.722916e-04	ci right 2.308957e-04	k: 186	n:930000
Cons ci ratio: 6.929524e-01	ci left: 2.264849e-05	ci right 4.731368e-05	k: 31	n:930000
KS ci ratio: 1.152224e-01	ci left: 1.171376e-03	ci right 1.315630e-03	k: 1155	n:930000
SFPQ   930000 perm   547 sec   (1699 perm/sec)   p_kst 1.241935e-03   p_cons 3.333333e-05   p_joint 2.000000e-04

Joint ci ratio: 2.858666e-01	ci left: 1.714461e-04	ci right 2.295794e-04	k: 187	n:940000
Cons ci ratio: 6.929525e-01	ci left: 2.240755e-05	ci right 4.681034e-05	k: 31	n:940000
KS ci ratio: 1.144819e-01	ci left: 1.174414e-03	ci right 1.318049e-03	k: 1170	n:940000
SFPQ   940000 perm   557 sec   (1688 perm/sec)   p_kst 1.244681e-03   p_cons 3.297872e-05   p_joint 1.989362e-04

Joint ci ratio: 2.843581e-01	ci left: 1.715962e-04	ci right 2.294182e-04	k: 189	n:950000
Cons ci ratio: 6.823722e-01	ci left: 2.304009e-05	ci right 4.755173e-05	k: 32	n:950000
KS ci ratio: 1.140447e-01	ci left: 1.171255e-03	ci right 1.313920e-03	k: 1179	n:950000
SFPQ   950000 perm   567 sec   (1676 perm/sec)   p_kst 1.241053e-03   p_cons 3.368421e-05   p_joint 1.989474e-04

Joint ci ratio: 2.828732e-01	ci left: 1.717439e-04	ci right 2.292595e-04	k: 191	n:960000
Cons ci ratio: 6.823723e-01	ci left: 2.280008e-05	ci right 4.705640e-05	k: 32	n:960000
KS ci ratio: 1.133265e-01	ci left: 1.174235e-03	ci right 1.316302e-03	k: 1194	n:960000
SFPQ   960000 perm   576 sec   (1665 perm/sec)   p_kst 1.243750e-03   p_cons 3.333333e-05   p_joint 1.989583e-04

Joint ci ratio: 2.821396e-01	ci left: 1.709312e-04	ci right 2.279998e-04	k: 192	n:970000
Cons ci ratio: 6.823725e-01	ci left: 2.256503e-05	ci right 4.657128e-05	k: 32	n:970000
KS ci ratio: 1.128554e-01	ci left: 1.172147e-03	ci right 1.313333e-03	k: 1204	n:970000
SFPQ   970000 perm   587 sec   (1654 perm/sec)   p_kst 1.241237e-03   p_cons 3.298969e-05   p_joint 1.979381e-04

Joint ci ratio: 3.006240e-01	ci left: 1.474308e-04	ci right 2.004955e-04	k: 169	n:980000
Cons ci ratio: 6.823726e-01	ci left: 2.233477e-05	ci right 4.609607e-05	k: 32	n:980000
KS ci ratio: 1.120215e-01	ci left: 1.178037e-03	ci right 1.318815e-03	k: 1222	n:980000
SFPQ   980000 perm   596 sec   (1643 perm/sec)   p_kst 1.246939e-03   p_cons 3.265306e-05   p_joint 1.724490e-04

Joint ci ratio: 2.980059e-01	ci left: 1.487444e-04	ci right 2.017275e-04	k: 172	n:990000
Cons ci ratio: 6.823727e-01	ci left: 2.210917e-05	ci right 4.563046e-05	k: 32	n:990000
KS ci ratio: 1.114760e-01	ci left: 1.177920e-03	ci right 1.317953e-03	k: 1234	n:990000
SFPQ   990000 perm   607 sec   (1632 perm/sec)   p_kst 1.246465e-03   p_cons 3.232323e-05   p_joint 1.737374e-04

Joint ci ratio: 3.108514e-01	ci left: 1.343255e-04	ci right 1.846448e-04	k: 158	n:1000000
Cons ci ratio: 6.722627e-01	ci left: 2.271579e-05	ci right 4.634396e-05	k: 33	n:1000000
KS ci ratio: 1.108050e-01	ci left: 1.180724e-03	ci right 1.320190e-03	k: 1249	n:1000000
SFPQ   1000000 perm   617 sec   (1622 perm/sec)   p_kst 1.249000e-03   p_cons 3.300000e-05   p_joint 1.580000e-04

Joint ci ratio: 3.211151e-01	ci left: 1.238794e-04	ci right 1.721335e-04	k: 148	n:1010000
Cons ci ratio: 6.722628e-01	ci left: 2.249088e-05	ci right 4.588511e-05	k: 33	n:1010000
KS ci ratio: 1.101895e-01	ci left: 1.182512e-03	ci right 1.321363e-03	k: 1263	n:1010000
SFPQ   1010000 perm   627 sec   (1612 perm/sec)   p_kst 1.250495e-03   p_cons 3.267327e-05   p_joint 1.465347e-04

Joint ci ratio: 3.255150e-01	ci left: 1.190615e-04	ci right 1.662072e-04	k: 144	n:1020000
Cons ci ratio: 6.625892e-01	ci left: 2.308441e-05	ci right 4.657968e-05	k: 34	n:1020000
KS ci ratio: 1.094557e-01	ci left: 1.187128e-03	ci right 1.325533e-03	k: 1280	n:1020000
SFPQ   1020000 perm   637 sec   (1602 perm/sec)   p_kst 1.254902e-03   p_cons 3.333333e-05   p_joint 1.411765e-04

Joint ci ratio: 3.255152e-01	ci left: 1.179055e-04	ci right 1.645936e-04	k: 144	n:1030000
Cons ci ratio: 6.625894e-01	ci left: 2.286029e-05	ci right 4.612746e-05	k: 34	n:1030000
KS ci ratio: 1.090311e-01	ci left: 1.185046e-03	ci right 1.322638e-03	k: 1290	n:1030000
SFPQ   1030000 perm   647 sec   (1592 perm/sec)   p_kst 1.252427e-03   p_cons 3.300971e-05   p_joint 1.398058e-04

Joint ci ratio: 3.312780e-01	ci left: 1.123604e-04	ci right 1.578084e-04	k: 139	n:1040000
Cons ci ratio: 6.533217e-01	ci left: 2.344125e-05	ci right 4.680405e-05	k: 35	n:1040000
KS ci ratio: 1.086532e-01	ci left: 1.182069e-03	ci right 1.318810e-03	k: 1299	n:1040000
SFPQ   1040000 perm   657 sec   (1582 perm/sec)   p_kst 1.249038e-03   p_cons 3.365385e-05   p_joint 1.336538e-04

Joint ci ratio: 3.312782e-01	ci left: 1.112903e-04	ci right 1.563055e-04	k: 139	n:1050000
Cons ci ratio: 6.533218e-01	ci left: 2.321799e-05	ci right 4.635830e-05	k: 35	n:1050000
KS ci ratio: 1.080316e-01	ci left: 1.184710e-03	ci right 1.320922e-03	k: 1314	n:1050000
SFPQ   1050000 perm   668 sec   (1572 perm/sec)   p_kst 1.251429e-03   p_cons 3.333333e-05   p_joint 1.323810e-04

Joint ci ratio: 3.324681e-01	ci left: 1.093755e-04	ci right 1.538093e-04	k: 138	n:1060000
Cons ci ratio: 6.533219e-01	ci left: 2.299896e-05	ci right 4.592096e-05	k: 35	n:1060000
KS ci ratio: 1.077455e-01	ci left: 1.179959e-03	ci right 1.315243e-03	k: 1321	n:1060000
SFPQ   1060000 perm   678 sec   (1563 perm/sec)   p_kst 1.246226e-03   p_cons 3.301887e-05   p_joint 1.301887e-04

Joint ci ratio: 3.312786e-01	ci left: 1.092100e-04	ci right 1.533840e-04	k: 139	n:1070000
Cons ci ratio: 6.533220e-01	ci left: 2.278401e-05	ci right 4.549179e-05	k: 35	n:1070000
KS ci ratio: 1.071794e-01	ci left: 1.181664e-03	ci right 1.316386e-03	k: 1335	n:1070000
SFPQ   1070000 perm   689 sec   (1553 perm/sec)   p_kst 1.247664e-03   p_cons 3.271028e-05   p_joint 1.299065e-04

Joint ci ratio: 3.312788e-01	ci left: 1.081988e-04	ci right 1.519638e-04	k: 139	n:1080000
Cons ci ratio: 6.533221e-01	ci left: 2.257305e-05	ci right 4.507057e-05	k: 35	n:1080000
KS ci ratio: 1.065826e-01	ci left: 1.184240e-03	ci right 1.318457e-03	k: 1350	n:1080000
SFPQ   1080000 perm   700 sec   (1543 perm/sec)   p_kst 1.250000e-03   p_cons 3.240741e-05   p_joint 1.287037e-04

Joint ci ratio: 3.277852e-01	ci left: 1.097308e-04	ci right 1.535487e-04	k: 142	n:1090000
Cons ci ratio: 6.444328e-01	ci left: 2.313217e-05	ci right 4.572372e-05	k: 36	n:1090000
KS ci ratio: 1.063470e-01	ci left: 1.178734e-03	ci right 1.312013e-03	k: 1356	n:1090000
SFPQ   1090000 perm   711 sec   (1533 perm/sec)   p_kst 1.244037e-03   p_cons 3.302752e-05   p_joint 1.302752e-04

Joint ci ratio: 3.671224e-01	ci left: 8.466254e-05	ci right 1.235052e-04	k: 113	n:1100000
Cons ci ratio: 6.358967e-01	ci left: 2.368321e-05	ci right 4.636300e-05	k: 37	n:1100000
KS ci ratio: 1.058413e-01	ci left: 1.179522e-03	ci right 1.312217e-03	k: 1369	n:1100000
SFPQ   1100000 perm   722 sec   (1524 perm/sec)   p_kst 1.244545e-03   p_cons 3.363636e-05   p_joint 1.027273e-04

Joint ci ratio: 3.671226e-01	ci left: 8.389981e-05	ci right 1.223926e-04	k: 113	n:1110000
Cons ci ratio: 6.358968e-01	ci left: 2.346985e-05	ci right 4.594532e-05	k: 37	n:1110000
KS ci ratio: 1.053045e-01	ci left: 1.181176e-03	ci right 1.313341e-03	k: 1383	n:1110000
SFPQ   1110000 perm   733 sec   (1515 perm/sec)   p_kst 1.245946e-03   p_cons 3.333333e-05   p_joint 1.018018e-04

Joint ci ratio: 3.671228e-01	ci left: 8.315069e-05	ci right 1.212998e-04	k: 113	n:1120000
Cons ci ratio: 6.358969e-01	ci left: 2.326029e-05	ci right 4.553510e-05	k: 37	n:1120000
KS ci ratio: 1.047758e-01	ci left: 1.182801e-03	ci right 1.314443e-03	k: 1397	n:1120000
SFPQ   1120000 perm   744 sec   (1506 perm/sec)   p_kst 1.247321e-03   p_cons 3.303571e-05   p_joint 1.008929e-04

Joint ci ratio: 3.671230e-01	ci left: 8.241484e-05	ci right 1.202264e-04	k: 113	n:1130000
Cons ci ratio: 6.358970e-01	ci left: 2.305445e-05	ci right 4.513213e-05	k: 37	n:1130000
KS ci ratio: 1.045147e-01	ci left: 1.178366e-03	ci right 1.309167e-03	k: 1404	n:1130000
SFPQ   1130000 perm   755 sec   (1497 perm/sec)   p_kst 1.242478e-03   p_cons 3.274336e-05   p_joint 1.000000e-04

Joint ci ratio: 3.655233e-01	ci left: 8.248835e-05	ci right 1.201293e-04	k: 114	n:1140000
Cons ci ratio: 6.358971e-01	ci left: 2.285222e-05	ci right 4.473624e-05	k: 37	n:1140000
KS ci ratio: 1.037784e-01	ci left: 1.185117e-03	ci right 1.315684e-03	k: 1424	n:1140000
SFPQ   1140000 perm   766 sec   (1489 perm/sec)   p_kst 1.249123e-03   p_cons 3.245614e-05   p_joint 1.000000e-04

Joint ci ratio: 3.623855e-01	ci left: 8.335117e-05	ci right 1.209822e-04	k: 116	n:1150000
Cons ci ratio: 6.276914e-01	ci left: 2.338363e-05	ci right 4.535448e-05	k: 38	n:1150000
KS ci ratio: 1.032005e-01	ci left: 1.188365e-03	ci right 1.318516e-03	k: 1440	n:1150000
SFPQ   1150000 perm   777 sec   (1480 perm/sec)   p_kst 1.252174e-03   p_cons 3.304348e-05   p_joint 1.008696e-04

Joint ci ratio: 3.639445e-01	ci left: 8.184920e-05	ci right 1.189989e-04	k: 115	n:1160000
Cons ci ratio: 6.276915e-01	ci left: 2.318205e-05	ci right 4.496349e-05	k: 38	n:1160000
KS ci ratio: 1.026321e-01	ci left: 1.191558e-03	ci right 1.321297e-03	k: 1456	n:1160000
SFPQ   1160000 perm   788 sec   (1472 perm/sec)   p_kst 1.255172e-03   p_cons 3.275862e-05   p_joint 9.913793e-05

Joint ci ratio: 3.639447e-01	ci left: 8.114963e-05	ci right 1.179818e-04	k: 115	n:1170000
Cons ci ratio: 6.276916e-01	ci left: 2.298391e-05	ci right 4.457919e-05	k: 38	n:1170000
KS ci ratio: 1.022469e-01	ci left: 1.190535e-03	ci right 1.319647e-03	k: 1467	n:1170000
SFPQ   1170000 perm   799 sec   (1464 perm/sec)   p_kst 1.253846e-03   p_cons 3.247863e-05   p_joint 9.829060e-05

Joint ci ratio: 3.639448e-01	ci left: 8.046192e-05	ci right 1.169820e-04	k: 115	n:1180000
Cons ci ratio: 6.276917e-01	ci left: 2.278913e-05	ci right 4.420140e-05	k: 38	n:1180000
KS ci ratio: 1.018660e-01	ci left: 1.189530e-03	ci right 1.318023e-03	k: 1478	n:1180000
SFPQ   1180000 perm   811 sec   (1455 perm/sec)   p_kst 1.252542e-03   p_cons 3.220339e-05   p_joint 9.745763e-05

Joint ci ratio: 3.608472e-01	ci left: 8.131342e-05	ci right 1.178320e-04	k: 117	n:1190000
Cons ci ratio: 6.197957e-01	ci left: 2.330498e-05	ci right 4.480165e-05	k: 39	n:1190000
KS ci ratio: 1.014553e-01	ci left: 1.189361e-03	ci right 1.317288e-03	k: 1490	n:1190000
SFPQ   1190000 perm   822 sec   (1447 perm/sec)   p_kst 1.252101e-03   p_cons 3.277311e-05   p_joint 9.831933e-05

Joint ci ratio: 3.608474e-01	ci left: 8.063580e-05	ci right 1.168501e-04	k: 117	n:1200000
Cons ci ratio: 6.197958e-01	ci left: 2.311078e-05	ci right 4.442830e-05	k: 39	n:1200000
KS ci ratio: 1.010832e-01	ci left: 1.188384e-03	ci right 1.315709e-03	k: 1501	n:1200000
SFPQ   1200000 perm   834 sec   (1439 perm/sec)   p_kst 1.250833e-03   p_cons 3.250000e-05   p_joint 9.750000e-05

Joint ci ratio: 3.608475e-01	ci left: 7.996939e-05	ci right 1.158844e-04	k: 117	n:1210000
Cons ci ratio: 6.197959e-01	ci left: 2.291978e-05	ci right 4.406113e-05	k: 39	n:1210000
KS ci ratio: 1.004827e-01	ci left: 1.193064e-03	ci right 1.320086e-03	k: 1519	n:1210000
SFPQ   1210000 perm   846 sec   (1431 perm/sec)   p_kst 1.255372e-03   p_cons 3.223140e-05   p_joint 9.669421e-05

Joint ci ratio: 3.608477e-01	ci left: 7.931389e-05	ci right 1.149345e-04	k: 117	n:1220000
Cons ci ratio: 6.197960e-01	ci left: 2.273191e-05	ci right 4.369998e-05	k: 39	n:1220000
KS ci ratio: 1.000230e-01	ci left: 1.194473e-03	ci right 1.321029e-03	k: 1533	n:1220000
SFPQ   1220000 perm   857 sec   (1423 perm/sec)   p_kst 1.256557e-03   p_cons 3.196721e-05   p_joint 9.590164e-05

Joint ci ratio: 3.593283e-01	ci left: 7.940853e-05	ci right 1.148863e-04	k: 118	n:1230000
Cons ci ratio: 6.197961e-01	ci left: 2.254710e-05	ci right 4.334469e-05	k: 39	n:1230000
KS ci ratio: 9.953746e-02	ci left: 1.196652e-03	ci right 1.322788e-03	k: 1548	n:1230000
SFPQ   1230000 perm   869 sec   (1415 perm/sec)   p_kst 1.258537e-03   p_cons 3.170732e-05   p_joint 9.593496e-05

Joint ci ratio: 3.623869e-01	ci left: 7.730144e-05	ci right 1.122013e-04	k: 116	n:1240000
Cons ci ratio: 6.197962e-01	ci left: 2.236526e-05	ci right 4.299514e-05	k: 39	n:1240000
KS ci ratio: 9.905889e-02	ci left: 1.198798e-03	ci right 1.324517e-03	k: 1563	n:1240000
SFPQ   1240000 perm   881 sec   (1408 perm/sec)   p_kst 1.260484e-03   p_cons 3.145161e-05   p_joint 9.354839e-05

Joint ci ratio: 3.608481e-01	ci left: 7.741035e-05	ci right 1.121761e-04	k: 117	n:1250000
Cons ci ratio: 6.197963e-01	ci left: 2.218634e-05	ci right 4.265118e-05	k: 39	n:1250000
KS ci ratio: 9.864973e-02	ci left: 1.199351e-03	ci right 1.324578e-03	k: 1576	n:1250000
SFPQ   1250000 perm   893 sec   (1400 perm/sec)   p_kst 1.260800e-03   p_cons 3.120000e-05   p_joint 9.360000e-05

Joint ci ratio: 3.608482e-01	ci left: 7.679597e-05	ci right 1.112858e-04	k: 117	n:1260000
Cons ci ratio: 6.197963e-01	ci left: 2.201026e-05	ci right 4.231268e-05	k: 39	n:1260000
KS ci ratio: 9.833854e-02	ci left: 1.197573e-03	ci right 1.322198e-03	k: 1586	n:1260000
SFPQ   1260000 perm   905 sec   (1392 perm/sec)   p_kst 1.258730e-03   p_cons 3.095238e-05   p_joint 9.285714e-05

Joint ci ratio: 3.563465e-01	ci left: 7.834070e-05	ci right 1.129837e-04	k: 120	n:1270000
Cons ci ratio: 6.197964e-01	ci left: 2.183695e-05	ci right 4.197951e-05	k: 39	n:1270000
KS ci ratio: 9.766357e-02	ci left: 1.205042e-03	ci right 1.329534e-03	k: 1608	n:1270000
SFPQ   1270000 perm   918 sec   (1383 perm/sec)   p_kst 1.266142e-03   p_cons 3.070866e-05   p_joint 9.448819e-05

Joint ci ratio: 3.563467e-01	ci left: 7.772866e-05	ci right 1.121010e-04	k: 120	n:1280000
Cons ci ratio: 6.197965e-01	ci left: 2.166635e-05	ci right 4.165155e-05	k: 39	n:1280000
KS ci ratio: 9.727139e-02	ci left: 1.205536e-03	ci right 1.329551e-03	k: 1621	n:1280000
SFPQ   1280000 perm   930 sec   (1376 perm/sec)   p_kst 1.266406e-03   p_cons 3.046875e-05   p_joint 9.375000e-05

Joint ci ratio: 3.534375e-01	ci left: 7.853829e-05	ci right 1.129200e-04	k: 122	n:1290000
Cons ci ratio: 6.121912e-01	ci left: 2.215248e-05	ci right 4.222352e-05	k: 40	n:1290000
KS ci ratio: 9.700278e-02	ci left: 1.202998e-03	ci right 1.326390e-03	k: 1630	n:1290000
SFPQ   1290000 perm   943 sec   (1369 perm/sec)   p_kst 1.263566e-03   p_cons 3.100775e-05   p_joint 9.457364e-05

Joint ci ratio: 3.534376e-01	ci left: 7.793415e-05	ci right 1.120514e-04	k: 122	n:1300000
Cons ci ratio: 6.121913e-01	ci left: 2.198208e-05	ci right 4.189873e-05	k: 40	n:1300000
KS ci ratio: 9.653034e-02	ci left: 1.205754e-03	ci right 1.328793e-03	k: 1646	n:1300000
SFPQ   1300000 perm   955 sec   (1361 perm/sec)   p_kst 1.266154e-03   p_cons 3.076923e-05   p_joint 9.384615e-05

Joint ci ratio: 3.505986e-01	ci left: 7.873097e-05	ci right 1.128572e-04	k: 124	n:1310000
Cons ci ratio: 6.121913e-01	ci left: 2.181427e-05	ci right 4.157889e-05	k: 40	n:1310000
KS ci ratio: 9.606472e-02	ci left: 1.208470e-03	ci right 1.331157e-03	k: 1662	n:1310000
SFPQ   1310000 perm   968 sec   (1354 perm/sec)   p_kst 1.268702e-03   p_cons 3.053435e-05   p_joint 9.465649e-05

Joint ci ratio: 3.505987e-01	ci left: 7.813452e-05	ci right 1.120023e-04	k: 124	n:1320000
Cons ci ratio: 6.121914e-01	ci left: 2.164901e-05	ci right 4.126390e-05	k: 40	n:1320000
KS ci ratio: 9.577729e-02	ci left: 1.206709e-03	ci right 1.328830e-03	k: 1672	n:1320000
SFPQ   1320000 perm   980 sec   (1347 perm/sec)   p_kst 1.266667e-03   p_cons 3.030303e-05   p_joint 9.393939e-05

Joint ci ratio: 3.505989e-01	ci left: 7.754703e-05	ci right 1.111601e-04	k: 124	n:1330000
Cons ci ratio: 6.121915e-01	ci left: 2.148624e-05	ci right 4.095365e-05	k: 40	n:1330000
KS ci ratio: 9.560624e-02	ci left: 1.202039e-03	ci right 1.323458e-03	k: 1678	n:1330000
SFPQ   1330000 perm   993 sec   (1340 perm/sec)   p_kst 1.261654e-03   p_cons 3.007519e-05   p_joint 9.323308e-05

Joint ci ratio: 3.505990e-01	ci left: 7.696832e-05	ci right 1.103306e-04	k: 124	n:1340000
Cons ci ratio: 6.121916e-01	ci left: 2.132589e-05	ci right 4.064802e-05	k: 40	n:1340000
KS ci ratio: 9.521007e-02	ci left: 1.203267e-03	ci right 1.324278e-03	k: 1692	n:1340000
SFPQ   1340000 perm   1006 sec   (1333 perm/sec)   p_kst 1.262687e-03   p_cons 2.985075e-05   p_joint 9.253731e-05

Joint ci ratio: 3.492049e-01	ci left: 7.707383e-05	ci right 1.103189e-04	k: 125	n:1350000
Cons ci ratio: 6.121916e-01	ci left: 2.116792e-05	ci right 4.034693e-05	k: 40	n:1350000
KS ci ratio: 9.493022e-02	ci left: 1.201585e-03	ci right 1.322052e-03	k: 1702	n:1350000
SFPQ   1350000 perm   1018 sec   (1326 perm/sec)   p_kst 1.260741e-03   p_cons 2.962963e-05   p_joint 9.259259e-05

Joint ci ratio: 3.843728e-01	ci left: 6.181801e-05	ci right 9.185033e-05	k: 103	n:1360000
Cons ci ratio: 6.121917e-01	ci left: 2.101228e-05	ci right 4.005026e-05	k: 40	n:1360000
KS ci ratio: 9.437740e-02	ci left: 1.207108e-03	ci right 1.327385e-03	k: 1722	n:1360000
SFPQ   1360000 perm   1031 sec   (1319 perm/sec)   p_kst 1.266176e-03   p_cons 2.941176e-05   p_joint 7.573529e-05

Joint ci ratio: 3.843729e-01	ci left: 6.136678e-05	ci right 9.117990e-05	k: 103	n:1370000
Cons ci ratio: 6.121918e-01	ci left: 2.085890e-05	ci right 3.975793e-05	k: 40	n:1370000
KS ci ratio: 9.413200e-02	ci left: 1.204711e-03	ci right 1.324420e-03	k: 1731	n:1370000
SFPQ   1370000 perm   1044 sec   (1312 perm/sec)   p_kst 1.263504e-03   p_cons 2.919708e-05   p_joint 7.518248e-05

Joint ci ratio: 3.900402e-01	ci left: 5.895979e-05	ci right 8.813467e-05	k: 100	n:1380000
Cons ci ratio: 6.121918e-01	ci left: 2.070775e-05	ci right 3.946983e-05	k: 40	n:1380000
KS ci ratio: 9.370008e-02	ci left: 1.207303e-03	ci right 1.326690e-03	k: 1747	n:1380000
SFPQ   1380000 perm   1057 sec   (1305 perm/sec)   p_kst 1.265942e-03   p_cons 2.898551e-05   p_joint 7.246377e-05

Joint ci ratio: 3.900403e-01	ci left: 5.853562e-05	ci right 8.750061e-05	k: 100	n:1390000
Cons ci ratio: 6.121919e-01	ci left: 2.055877e-05	ci right 3.918587e-05	k: 40	n:1390000
KS ci ratio: 9.335357e-02	ci left: 1.207752e-03	ci right 1.326716e-03	k: 1760	n:1390000
SFPQ   1390000 perm   1070 sec   (1299 perm/sec)   p_kst 1.266187e-03   p_cons 2.877698e-05   p_joint 7.194245e-05

Joint ci ratio: 3.881236e-01	ci left: 5.876191e-05	ci right 8.765943e-05	k: 101	n:1400000
Cons ci ratio: 6.121920e-01	ci left: 2.041192e-05	ci right 3.890598e-05	k: 40	n:1400000
KS ci ratio: 9.306343e-02	ci left: 1.206799e-03	ci right 1.325280e-03	k: 1771	n:1400000
SFPQ   1400000 perm   1084 sec   (1292 perm/sec)   p_kst 1.265000e-03   p_cons 2.857143e-05   p_joint 7.214286e-05

Joint ci ratio: 3.843733e-01	ci left: 5.962587e-05	ci right 8.859325e-05	k: 103	n:1410000
Cons ci ratio: 6.048599e-01	ci left: 2.086696e-05	ci right 3.944741e-05	k: 41	n:1410000
KS ci ratio: 9.251656e-02	ci left: 1.212788e-03	ci right 1.331120e-03	k: 1792	n:1410000
SFPQ   1410000 perm   1097 sec   (1286 perm/sec)   p_kst 1.270922e-03   p_cons 2.907801e-05   p_joint 7.304965e-05

Joint ci ratio: 3.771877e-01	ci left: 6.175327e-05	ci right 9.105460e-05	k: 107	n:1420000
Cons ci ratio: 5.977851e-01	ci left: 2.131692e-05	ci right 3.997993e-05	k: 42	n:1420000
KS ci ratio: 9.210640e-02	ci left: 1.215255e-03	ci right 1.333273e-03	k: 1808	n:1420000
SFPQ   1420000 perm   1110 sec   (1279 perm/sec)   p_kst 1.273239e-03   p_cons 2.957746e-05   p_joint 7.535211e-05

Joint ci ratio: 3.737428e-01	ci left: 6.258806e-05	ci right 9.194784e-05	k: 109	n:1430000
Cons ci ratio: 5.909529e-01	ci left: 2.176184e-05	ci right 4.050379e-05	k: 43	n:1430000
KS ci ratio: 9.182769e-02	ci left: 1.214272e-03	ci right 1.331819e-03	k: 1819	n:1430000
SFPQ   1430000 perm   1124 sec   (1273 perm/sec)   p_kst 1.272028e-03   p_cons 3.006993e-05   p_joint 7.622378e-05

Joint ci ratio: 3.737429e-01	ci left: 6.215341e-05	ci right 9.130932e-05	k: 109	n:1440000
Cons ci ratio: 5.909530e-01	ci left: 2.161072e-05	ci right 4.022251e-05	k: 43	n:1440000
KS ci ratio: 9.150148e-02	ci left: 1.214660e-03	ci right 1.331805e-03	k: 1832	n:1440000
SFPQ   1440000 perm   1137 sec   (1266 perm/sec)   p_kst 1.272222e-03   p_cons 2.986111e-05   p_joint 7.569444e-05

Joint ci ratio: 3.703908e-01	ci left: 6.297511e-05	ci right 9.218730e-05	k: 111	n:1450000
Cons ci ratio: 5.909531e-01	ci left: 2.146168e-05	ci right 3.994512e-05	k: 43	n:1450000
KS ci ratio: 9.115399e-02	ci left: 1.215718e-03	ci right 1.332496e-03	k: 1846	n:1450000
SFPQ   1450000 perm   1151 sec   (1260 perm/sec)   p_kst 1.273103e-03   p_cons 2.965517e-05   p_joint 7.655172e-05

Joint ci ratio: 3.671272e-01	ci left: 6.378671e-05	ci right 9.305212e-05	k: 113	n:1460000
Cons ci ratio: 5.909531e-01	ci left: 2.131468e-05	ci right 3.967152e-05	k: 43	n:1460000
KS ci ratio: 9.078602e-02	ci left: 1.217431e-03	ci right 1.333876e-03	k: 1861	n:1460000
SFPQ   1460000 perm   1165 sec   (1254 perm/sec)   p_kst 1.274658e-03   p_cons 2.945205e-05   p_joint 7.739726e-05

Joint ci ratio: 3.671273e-01	ci left: 6.335278e-05	ci right 9.241912e-05	k: 113	n:1470000
Cons ci ratio: 5.909532e-01	ci left: 2.116968e-05	ci right 3.940165e-05	k: 43	n:1470000
KS ci ratio: 9.047074e-02	ci left: 1.217793e-03	ci right 1.333846e-03	k: 1874	n:1470000
SFPQ   1470000 perm   1179 sec   (1247 perm/sec)   p_kst 1.274830e-03   p_cons 2.925170e-05   p_joint 7.687075e-05

Joint ci ratio: 3.639485e-01	ci left: 6.415196e-05	ci right 9.326960e-05	k: 115	n:1480000
Cons ci ratio: 5.843500e-01	ci left: 2.160175e-05	ci right 3.991057e-05	k: 44	n:1480000
KS ci ratio: 9.001562e-02	ci left: 1.222113e-03	ci right 1.337961e-03	k: 1893	n:1480000
SFPQ   1480000 perm   1192 sec   (1241 perm/sec)   p_kst 1.279054e-03   p_cons 2.972973e-05   p_joint 7.770270e-05

Joint ci ratio: 3.639486e-01	ci left: 6.372141e-05	ci right 9.264364e-05	k: 115	n:1490000
Cons ci ratio: 5.843501e-01	ci left: 2.145677e-05	ci right 3.964272e-05	k: 44	n:1490000
KS ci ratio: 8.977901e-02	ci left: 1.220471e-03	ci right 1.335844e-03	k: 1903	n:1490000
SFPQ   1490000 perm   1206 sec   (1235 perm/sec)   p_kst 1.277181e-03   p_cons 2.953020e-05   p_joint 7.718121e-05

Joint ci ratio: 3.639487e-01	ci left: 6.329660e-05	ci right 9.202602e-05	k: 115	n:1500000
Cons ci ratio: 5.843501e-01	ci left: 2.131372e-05	ci right 3.937843e-05	k: 44	n:1500000
KS ci ratio: 8.952084e-02	ci left: 1.219503e-03	ci right 1.334436e-03	k: 1914	n:1500000
SFPQ   1500000 perm   1220 sec   (1229 perm/sec)   p_kst 1.276000e-03   p_cons 2.933333e-05   p_joint 7.666667e-05

Joint ci ratio: 3.639488e-01	ci left: 6.287741e-05	ci right 9.141658e-05	k: 115	n:1510000
Cons ci ratio: 5.843502e-01	ci left: 2.117257e-05	ci right 3.911765e-05	k: 44	n:1510000
KS ci ratio: 8.924169e-02	ci left: 1.219197e-03	ci right 1.333723e-03	k: 1926	n:1510000
SFPQ   1510000 perm   1235 sec   (1223 perm/sec)   p_kst 1.275497e-03   p_cons 2.913907e-05   p_joint 7.615894e-05

Joint ci ratio: 3.639489e-01	ci left: 6.246374e-05	ci right 9.081516e-05	k: 115	n:1520000
Cons ci ratio: 5.843503e-01	ci left: 2.103328e-05	ci right 3.886030e-05	k: 44	n:1520000
KS ci ratio: 8.894217e-02	ci left: 1.219538e-03	ci right 1.333692e-03	k: 1939	n:1520000
SFPQ   1520000 perm   1249 sec   (1217 perm/sec)   p_kst 1.275658e-03   p_cons 2.894737e-05   p_joint 7.565789e-05

Joint ci ratio: 3.639489e-01	ci left: 6.205548e-05	ci right 9.022160e-05	k: 115	n:1530000
Cons ci ratio: 5.843503e-01	ci left: 2.089581e-05	ci right 3.860631e-05	k: 44	n:1530000
KS ci ratio: 8.869114e-02	ci left: 1.218597e-03	ci right 1.332324e-03	k: 1950	n:1530000
SFPQ   1530000 perm   1263 sec   (1211 perm/sec)   p_kst 1.274510e-03   p_cons 2.875817e-05   p_joint 7.516340e-05

Joint ci ratio: 3.639490e-01	ci left: 6.165252e-05	ci right 8.963575e-05	k: 115	n:1540000
Cons ci ratio: 5.843504e-01	ci left: 2.076012e-05	ci right 3.835562e-05	k: 44	n:1540000
KS ci ratio: 8.846479e-02	ci left: 1.217033e-03	ci right 1.330310e-03	k: 1960	n:1540000
SFPQ   1540000 perm   1278 sec   (1205 perm/sec)   p_kst 1.272727e-03   p_cons 2.857143e-05   p_joint 7.467532e-05

Joint ci ratio: 3.639491e-01	ci left: 6.125476e-05	ci right 8.905746e-05	k: 115	n:1550000
Cons ci ratio: 5.779637e-01	ci left: 2.117640e-05	ci right 3.884725e-05	k: 45	n:1550000
KS ci ratio: 8.803913e-02	ci left: 1.221169e-03	ci right 1.334256e-03	k: 1979	n:1550000
SFPQ   1550000 perm   1292 sec   (1200 perm/sec)   p_kst 1.276774e-03   p_cons 2.903226e-05   p_joint 7.419355e-05

Joint ci ratio: 3.608515e-01	ci left: 6.202743e-05	ci right 8.988486e-05	k: 117	n:1560000
Cons ci ratio: 5.779638e-01	ci left: 2.104066e-05	ci right 3.859824e-05	k: 45	n:1560000
KS ci ratio: 8.764152e-02	ci left: 1.224626e-03	ci right 1.337495e-03	k: 1997	n:1560000
SFPQ   1560000 perm   1307 sec   (1194 perm/sec)   p_kst 1.280128e-03   p_cons 2.884615e-05   p_joint 7.500000e-05

Joint ci ratio: 3.608516e-01	ci left: 6.163234e-05	ci right 8.931235e-05	k: 117	n:1570000
Cons ci ratio: 5.717820e-01	ci left: 2.145089e-05	ci right 3.908105e-05	k: 46	n:1570000
KS ci ratio: 8.737953e-02	ci left: 1.224302e-03	ci right 1.336786e-03	k: 2009	n:1570000
SFPQ   1570000 perm   1321 sec   (1189 perm/sec)   p_kst 1.279618e-03   p_cons 2.929936e-05   p_joint 7.452229e-05

Joint ci ratio: 3.578317e-01	ci left: 6.239382e-05	ci right 9.012670e-05	k: 119	n:1580000
Cons ci ratio: 5.717821e-01	ci left: 2.131513e-05	ci right 3.883371e-05	k: 46	n:1580000
KS ci ratio: 8.703373e-02	ci left: 1.226459e-03	ci right 1.338673e-03	k: 2025	n:1580000
SFPQ   1580000 perm   1335 sec   (1183 perm/sec)   p_kst 1.281646e-03   p_cons 2.911392e-05   p_joint 7.531646e-05

Joint ci ratio: 3.578318e-01	ci left: 6.200141e-05	ci right 8.955987e-05	k: 119	n:1590000
Cons ci ratio: 5.717821e-01	ci left: 2.118107e-05	ci right 3.858947e-05	k: 46	n:1590000
KS ci ratio: 8.669200e-02	ci left: 1.228590e-03	ci right 1.340535e-03	k: 2041	n:1590000
SFPQ   1590000 perm   1350 sec   (1178 perm/sec)   p_kst 1.283648e-03   p_cons 2.893082e-05   p_joint 7.484277e-05

Joint ci ratio: 3.578319e-01	ci left: 6.161389e-05	ci right 8.900013e-05	k: 119	n:1600000
Cons ci ratio: 5.717822e-01	ci left: 2.104869e-05	ci right 3.834829e-05	k: 46	n:1600000
KS ci ratio: 8.654395e-02	ci left: 1.225191e-03	ci right 1.336626e-03	k: 2048	n:1600000
SFPQ   1600000 perm   1366 sec   (1172 perm/sec)   p_kst 1.280000e-03   p_cons 2.875000e-05   p_joint 7.437500e-05

Joint ci ratio: 3.578320e-01	ci left: 6.123120e-05	ci right 8.844733e-05	k: 119	n:1610000
Cons ci ratio: 5.717822e-01	ci left: 2.091795e-05	ci right 3.811010e-05	k: 46	n:1610000
KS ci ratio: 8.629165e-02	ci left: 1.224874e-03	ci right 1.335939e-03	k: 2060	n:1610000
SFPQ   1610000 perm   1381 sec   (1166 perm/sec)   p_kst 1.279503e-03   p_cons 2.857143e-05   p_joint 7.391304e-05

Joint ci ratio: 3.608520e-01	ci left: 5.973010e-05	ci right 8.655582e-05	k: 117	n:1620000
Cons ci ratio: 5.717823e-01	ci left: 2.078883e-05	ci right 3.787485e-05	k: 46	n:1620000
KS ci ratio: 8.597928e-02	ci left: 1.226373e-03	ci right 1.337151e-03	k: 2075	n:1620000
SFPQ   1620000 perm   1395 sec   (1161 perm/sec)   p_kst 1.280864e-03   p_cons 2.839506e-05   p_joint 7.222222e-05

Joint ci ratio: 3.578321e-01	ci left: 6.047989e-05	ci right 8.736210e-05	k: 119	n:1630000
Cons ci ratio: 5.599914e-01	ci left: 2.171260e-05	ci right 3.904339e-05	k: 48	n:1630000
KS ci ratio: 8.569080e-02	ci left: 1.227254e-03	ci right 1.337721e-03	k: 2089	n:1630000
SFPQ   1630000 perm   1410 sec   (1156 perm/sec)   p_kst 1.281595e-03   p_cons 2.944785e-05   p_joint 7.300613e-05

Joint ci ratio: 3.578322e-01	ci left: 6.011111e-05	ci right 8.682941e-05	k: 119	n:1640000
Cons ci ratio: 5.599915e-01	ci left: 2.158020e-05	ci right 3.880532e-05	k: 48	n:1640000
KS ci ratio: 8.556824e-02	ci left: 1.223350e-03	ci right 1.333301e-03	k: 2095	n:1640000
SFPQ   1640000 perm   1426 sec   (1150 perm/sec)   p_kst 1.277439e-03   p_cons 2.926829e-05   p_joint 7.256098e-05

Joint ci ratio: 3.548869e-01	ci left: 6.085042e-05	ci right 8.762335e-05	k: 121	n:1650000
Cons ci ratio: 5.599915e-01	ci left: 2.144942e-05	ci right 3.857014e-05	k: 48	n:1650000
KS ci ratio: 8.534463e-02	ci left: 1.222460e-03	ci right 1.332029e-03	k: 2106	n:1650000
SFPQ   1650000 perm   1441 sec   (1145 perm/sec)   p_kst 1.276364e-03   p_cons 2.909091e-05   p_joint 7.333333e-05

Joint ci ratio: 3.548870e-01	ci left: 6.048385e-05	ci right 8.709550e-05	k: 121	n:1660000
Cons ci ratio: 5.599916e-01	ci left: 2.132020e-05	ci right 3.833779e-05	k: 48	n:1660000
KS ci ratio: 8.504240e-02	ci left: 1.223940e-03	ci right 1.333234e-03	k: 2121	n:1660000
SFPQ   1660000 perm   1456 sec   (1140 perm/sec)   p_kst 1.277711e-03   p_cons 2.891566e-05   p_joint 7.289157e-05

Joint ci ratio: 3.548871e-01	ci left: 6.012167e-05	ci right 8.657398e-05	k: 121	n:1670000
Cons ci ratio: 5.599916e-01	ci left: 2.119254e-05	ci right 3.810823e-05	k: 48	n:1670000
KS ci ratio: 8.470367e-02	ci left: 1.226575e-03	ci right 1.335646e-03	k: 2138	n:1670000
SFPQ   1670000 perm   1471 sec   (1135 perm/sec)   p_kst 1.280240e-03   p_cons 2.874251e-05   p_joint 7.245509e-05

Joint ci ratio: 3.534415e-01	ci left: 6.030608e-05	ci right 8.670663e-05	k: 122	n:1680000
Cons ci ratio: 5.599917e-01	ci left: 2.106639e-05	ci right 3.788139e-05	k: 48	n:1680000
KS ci ratio: 8.452613e-02	ci left: 1.224517e-03	ci right 1.333166e-03	k: 2147	n:1680000
SFPQ   1680000 perm   1487 sec   (1130 perm/sec)   p_kst 1.277976e-03   p_cons 2.857143e-05   p_joint 7.261905e-05

Joint ci ratio: 3.534415e-01	ci left: 5.994924e-05	ci right 8.619358e-05	k: 122	n:1690000
Cons ci ratio: 5.599917e-01	ci left: 2.094174e-05	ci right 3.765724e-05	k: 48	n:1690000
KS ci ratio: 8.425198e-02	ci left: 1.225381e-03	ci right 1.333736e-03	k: 2161	n:1690000
SFPQ   1690000 perm   1502 sec   (1125 perm/sec)   p_kst 1.278698e-03   p_cons 2.840237e-05   p_joint 7.218935e-05

Joint ci ratio: 3.534416e-01	ci left: 5.959660e-05	ci right 8.568656e-05	k: 122	n:1700000
Cons ci ratio: 5.599918e-01	ci left: 2.081855e-05	ci right 3.743573e-05	k: 48	n:1700000
KS ci ratio: 8.401915e-02	ci left: 1.225083e-03	ci right 1.333098e-03	k: 2173	n:1700000
SFPQ   1700000 perm   1518 sec   (1120 perm/sec)   p_kst 1.278235e-03   p_cons 2.823529e-05   p_joint 7.176471e-05

Joint ci ratio: 3.771902e-01	ci left: 5.128044e-05	ci right 7.561269e-05	k: 107	n:1710000
Cons ci ratio: 5.543634e-01	ci left: 2.119918e-05	ci right 3.788322e-05	k: 49	n:1710000
KS ci ratio: 8.378824e-02	ci left: 1.224789e-03	ci right 1.332467e-03	k: 2185	n:1710000
SFPQ   1710000 perm   1534 sec   (1115 perm/sec)   p_kst 1.277778e-03   p_cons 2.865497e-05   p_joint 6.257310e-05

Joint ci ratio: 3.771902e-01	ci left: 5.098230e-05	ci right 7.517309e-05	k: 107	n:1720000
Cons ci ratio: 5.543635e-01	ci left: 2.107593e-05	ci right 3.766297e-05	k: 49	n:1720000
KS ci ratio: 8.346423e-02	ci left: 1.227345e-03	ci right 1.334810e-03	k: 2202	n:1720000
SFPQ   1720000 perm   1550 sec   (1110 perm/sec)   p_kst 1.280233e-03   p_cons 2.848837e-05   p_joint 6.220930e-05

Joint ci ratio: 3.754560e-01	ci left: 5.121096e-05	ci right 7.537102e-05	k: 108	n:1730000
Cons ci ratio: 5.543635e-01	ci left: 2.095410e-05	ci right 3.744526e-05	k: 49	n:1730000
KS ci ratio: 8.325667e-02	ci left: 1.226477e-03	ci right 1.333586e-03	k: 2213	n:1730000
SFPQ   1730000 perm   1566 sec   (1105 perm/sec)   p_kst 1.279191e-03   p_cons 2.832370e-05   p_joint 6.242775e-05

Joint ci ratio: 3.737454e-01	ci left: 5.143725e-05	ci right 7.556643e-05	k: 109	n:1740000
Cons ci ratio: 5.435979e-01	ci left: 2.182355e-05	ci right 3.853751e-05	k: 51	n:1740000
KS ci ratio: 8.295738e-02	ci left: 1.228432e-03	ci right 1.335308e-03	k: 2229	n:1740000
SFPQ   1740000 perm   1582 sec   (1100 perm/sec)   p_kst 1.281034e-03   p_cons 2.931034e-05   p_joint 6.264368e-05

Joint ci ratio: 3.720580e-01	ci left: 5.166120e-05	ci right 7.575937e-05	k: 110	n:1750000
Cons ci ratio: 5.384451e-01	ci left: 2.219213e-05	ci right 3.896615e-05	k: 52	n:1750000
KS ci ratio: 8.275357e-02	ci left: 1.227568e-03	ci right 1.334093e-03	k: 2240	n:1750000
SFPQ   1750000 perm   1598 sec   (1095 perm/sec)   p_kst 1.280000e-03   p_cons 2.971429e-05   p_joint 6.285714e-05

Joint ci ratio: 3.720581e-01	ci left: 5.136767e-05	ci right 7.532892e-05	k: 110	n:1760000
Cons ci ratio: 5.384452e-01	ci left: 2.206603e-05	ci right 3.874475e-05	k: 52	n:1760000
KS ci ratio: 8.247795e-02	ci left: 1.228940e-03	ci right 1.335212e-03	k: 2255	n:1760000
SFPQ   1760000 perm   1614 sec   (1091 perm/sec)   p_kst 1.281250e-03   p_cons 2.954545e-05   p_joint 6.250000e-05

Joint ci ratio: 3.881265e-01	ci left: 4.647829e-05	ci right 6.933526e-05	k: 101	n:1770000
Cons ci ratio: 5.384452e-01	ci left: 2.194137e-05	ci right 3.852586e-05	k: 52	n:1770000
KS ci ratio: 8.222320e-02	ci left: 1.229743e-03	ci right 1.335741e-03	k: 2269	n:1770000
SFPQ   1770000 perm   1630 sec   (1086 perm/sec)   p_kst 1.281921e-03   p_cons 2.937853e-05   p_joint 5.706215e-05

Joint ci ratio: 3.881266e-01	ci left: 4.621717e-05	ci right 6.894573e-05	k: 101	n:1780000
Cons ci ratio: 5.384452e-01	ci left: 2.181810e-05	ci right 3.830942e-05	k: 52	n:1780000
KS ci ratio: 8.193487e-02	ci left: 1.231639e-03	ci right 1.337410e-03	k: 2285	n:1780000
SFPQ   1780000 perm   1646 sec   (1082 perm/sec)   p_kst 1.283708e-03   p_cons 2.921348e-05   p_joint 5.674157e-05

Joint ci ratio: 3.881267e-01	ci left: 4.595898e-05	ci right 6.856056e-05	k: 101	n:1790000
Cons ci ratio: 5.384453e-01	ci left: 2.169621e-05	ci right 3.809540e-05	k: 52	n:1790000
KS ci ratio: 8.166732e-02	ci left: 1.232967e-03	ci right 1.338490e-03	k: 2300	n:1790000
SFPQ   1790000 perm   1662 sec   (1077 perm/sec)   p_kst 1.284916e-03   p_cons 2.905028e-05   p_joint 5.642458e-05

Joint ci ratio: 3.825416e-01	ci left: 4.720887e-05	ci right 7.000702e-05	k: 104	n:1800000
Cons ci ratio: 5.384453e-01	ci left: 2.157568e-05	ci right 3.788376e-05	k: 52	n:1800000
KS ci ratio: 8.127948e-02	ci left: 1.238091e-03	ci right 1.343525e-03	k: 2322	n:1800000
SFPQ   1800000 perm   1678 sec   (1072 perm/sec)   p_kst 1.290000e-03   p_cons 2.888889e-05   p_joint 5.777778e-05

Joint ci ratio: 3.881268e-01	ci left: 4.545114e-05	ci right 6.780299e-05	k: 101	n:1810000
Cons ci ratio: 5.334363e-01	ci left: 2.193413e-05	ci right 3.830110e-05	k: 53	n:1810000
KS ci ratio: 8.100094e-02	ci left: 1.239911e-03	ci right 1.345121e-03	k: 2338	n:1810000
SFPQ   1810000 perm   1695 sec   (1068 perm/sec)   p_kst 1.291713e-03   p_cons 2.928177e-05   p_joint 5.580110e-05

Joint ci ratio: 3.862380e-01	ci left: 4.569737e-05	ci right 6.803313e-05	k: 102	n:1820000
Cons ci ratio: 5.334364e-01	ci left: 2.181361e-05	ci right 3.809066e-05	k: 53	n:1820000
KS ci ratio: 8.082840e-02	ci left: 1.238481e-03	ci right 1.343336e-03	k: 2348	n:1820000
SFPQ   1820000 perm   1711 sec   (1064 perm/sec)   p_kst 1.290110e-03   p_cons 2.912088e-05   p_joint 5.604396e-05

Joint ci ratio: 3.843766e-01	ci left: 4.594117e-05	ci right 6.826050e-05	k: 103	n:1830000
Cons ci ratio: 5.334364e-01	ci left: 2.169441e-05	ci right 3.788251e-05	k: 53	n:1830000
KS ci ratio: 8.065697e-02	ci left: 1.237068e-03	ci right 1.341570e-03	k: 2358	n:1830000
SFPQ   1830000 perm   1728 sec   (1059 perm/sec)   p_kst 1.288525e-03   p_cons 2.896175e-05   p_joint 5.628415e-05

Joint ci ratio: 3.825418e-01	ci left: 4.618258e-05	ci right 6.848514e-05	k: 104	n:1840000
Cons ci ratio: 5.238239e-01	ci left: 2.251830e-05	ci right 3.890747e-05	k: 55	n:1840000
KS ci ratio: 8.026640e-02	ci left: 1.242593e-03	ci right 1.347030e-03	k: 2381	n:1840000
SFPQ   1840000 perm   1745 sec   (1054 perm/sec)   p_kst 1.294022e-03   p_cons 2.989130e-05   p_joint 5.652174e-05

Joint ci ratio: 3.807330e-01	ci left: 4.642163e-05	ci right 6.870710e-05	k: 105	n:1850000
Cons ci ratio: 5.192085e-01	ci left: 2.286592e-05	ci right 3.930829e-05	k: 56	n:1850000
KS ci ratio: 8.003153e-02	ci left: 1.243292e-03	ci right 1.347468e-03	k: 2395	n:1850000
SFPQ   1850000 perm   1762 sec   (1050 perm/sec)   p_kst 1.294595e-03   p_cons 3.027027e-05   p_joint 5.675676e-05

Joint ci ratio: 3.789497e-01	ci left: 4.665835e-05	ci right 6.892644e-05	k: 106	n:1860000
Cons ci ratio: 5.192086e-01	ci left: 2.274298e-05	ci right 3.909695e-05	k: 56	n:1860000
KS ci ratio: 7.976558e-02	ci left: 1.245038e-03	ci right 1.348997e-03	k: 2411	n:1860000
SFPQ   1860000 perm   1779 sec   (1046 perm/sec)   p_kst 1.296237e-03   p_cons 3.010753e-05   p_joint 5.698925e-05

Joint ci ratio: 3.789498e-01	ci left: 4.640884e-05	ci right 6.855785e-05	k: 106	n:1870000
Cons ci ratio: 5.192086e-01	ci left: 2.262136e-05	ci right 3.888788e-05	k: 56	n:1870000
KS ci ratio: 7.953507e-02	ci left: 1.245718e-03	ci right 1.349419e-03	k: 2425	n:1870000
SFPQ   1870000 perm   1796 sec   (1041 perm/sec)   p_kst 1.296791e-03   p_cons 2.994652e-05   p_joint 5.668449e-05

Joint ci ratio: 3.771912e-01	ci left: 4.664336e-05	ci right 6.877542e-05	k: 107	n:1880000
Cons ci ratio: 5.192087e-01	ci left: 2.250103e-05	ci right 3.868103e-05	k: 56	n:1880000
KS ci ratio: 7.925777e-02	ci left: 1.247955e-03	ci right 1.351464e-03	k: 2442	n:1880000
SFPQ   1880000 perm   1813 sec   (1037 perm/sec)   p_kst 1.298936e-03   p_cons 2.978723e-05   p_joint 5.691489e-05

Joint ci ratio: 3.737464e-01	ci left: 4.735491e-05	ci right 6.956913e-05	k: 109	n:1890000
Cons ci ratio: 5.192087e-01	ci left: 2.238198e-05	ci right 3.847637e-05	k: 56	n:1890000
KS ci ratio: 7.895123e-02	ci left: 1.251206e-03	ci right 1.354565e-03	k: 2461	n:1890000
SFPQ   1890000 perm   1830 sec   (1033 perm/sec)   p_kst 1.302116e-03   p_cons 2.962963e-05   p_joint 5.767196e-05

Joint ci ratio: 3.720590e-01	ci left: 4.758267e-05	ci right 6.977840e-05	k: 110	n:1900000
Cons ci ratio: 5.192088e-01	ci left: 2.226418e-05	ci right 3.827386e-05	k: 56	n:1900000
KS ci ratio: 7.869586e-02	ci left: 1.252876e-03	ci right 1.356022e-03	k: 2477	n:1900000
SFPQ   1900000 perm   1847 sec   (1028 perm/sec)   p_kst 1.303684e-03   p_cons 2.947368e-05   p_joint 5.789474e-05

Joint ci ratio: 3.703942e-01	ci left: 4.780826e-05	ci right 6.998526e-05	k: 111	n:1910000
Cons ci ratio: 5.147133e-01	ci left: 2.260282e-05	ci right 3.866481e-05	k: 57	n:1910000
KS ci ratio: 7.849025e-02	ci left: 1.252989e-03	ci right 1.355863e-03	k: 2490	n:1910000
SFPQ   1910000 perm   1865 sec   (1024 perm/sec)   p_kst 1.303665e-03   p_cons 2.984293e-05   p_joint 5.811518e-05

Joint ci ratio: 3.687516e-01	ci left: 4.803172e-05	ci right 7.018974e-05	k: 112	n:1920000
Cons ci ratio: 5.147133e-01	ci left: 2.248510e-05	ci right 3.846343e-05	k: 57	n:1920000
KS ci ratio: 7.823932e-02	ci left: 1.254633e-03	ci right 1.357297e-03	k: 2506	n:1920000
SFPQ   1920000 perm   1882 sec   (1020 perm/sec)   p_kst 1.305208e-03   p_cons 2.968750e-05   p_joint 5.833333e-05

Joint ci ratio: 3.655309e-01	ci left: 4.872353e-05	ci right 7.095752e-05	k: 114	n:1930000
Cons ci ratio: 5.147133e-01	ci left: 2.236859e-05	ci right 3.826414e-05	k: 57	n:1930000
KS ci ratio: 7.809934e-02	ci left: 1.252704e-03	ci right 1.355019e-03	k: 2515	n:1930000
SFPQ   1930000 perm   1899 sec   (1016 perm/sec)   p_kst 1.303109e-03   p_cons 2.953368e-05   p_joint 5.906736e-05

Joint ci ratio: 3.655310e-01	ci left: 4.847237e-05	ci right 7.059176e-05	k: 114	n:1940000
Cons ci ratio: 5.103326e-01	ci left: 2.270205e-05	ci right 3.864852e-05	k: 58	n:1940000
KS ci ratio: 7.792921e-02	ci left: 1.251806e-03	ci right 1.353815e-03	k: 2526	n:1940000
SFPQ   1940000 perm   1917 sec   (1012 perm/sec)   p_kst 1.302062e-03   p_cons 2.989691e-05   p_joint 5.876289e-05

Joint ci ratio: 3.639519e-01	ci left: 4.868962e-05	ci right 7.078937e-05	k: 115	n:1950000
Cons ci ratio: 5.103327e-01	ci left: 2.258563e-05	ci right 3.845032e-05	k: 58	n:1950000
KS ci ratio: 7.772953e-02	ci left: 1.251924e-03	ci right 1.353669e-03	k: 2539	n:1950000
SFPQ   1950000 perm   1934 sec   (1008 perm/sec)   p_kst 1.302051e-03   p_cons 2.974359e-05   p_joint 5.897436e-05

Joint ci ratio: 3.608543e-01	ci left: 4.936871e-05	ci right 7.154112e-05	k: 117	n:1960000
Cons ci ratio: 5.103327e-01	ci left: 2.247040e-05	ci right 3.825415e-05	k: 58	n:1960000
KS ci ratio: 7.753138e-02	ci left: 1.252040e-03	ci right 1.353524e-03	k: 2552	n:1960000
SFPQ   1960000 perm   1952 sec   (1004 perm/sec)   p_kst 1.302041e-03   p_cons 2.959184e-05   p_joint 5.969388e-05

Joint ci ratio: 3.593349e-01	ci left: 4.957980e-05	ci right 7.173131e-05	k: 118	n:1970000
Cons ci ratio: 5.103328e-01	ci left: 2.235633e-05	ci right 3.805996e-05	k: 58	n:1970000
KS ci ratio: 7.741029e-02	ci left: 1.249667e-03	ci right 1.350793e-03	k: 2560	n:1970000
SFPQ   1970000 perm   1970 sec   (1000 perm/sec)   p_kst 1.299492e-03   p_cons 2.944162e-05   p_joint 5.989848e-05

Joint ci ratio: 3.578345e-01	ci left: 4.978895e-05	ci right 7.191939e-05	k: 119	n:1980000
Cons ci ratio: 5.103328e-01	ci left: 2.224342e-05	ci right 3.786774e-05	k: 58	n:1980000
KS ci ratio: 7.725966e-02	ci left: 1.248308e-03	ci right 1.349119e-03	k: 2570	n:1980000
SFPQ   1980000 perm   1987 sec   (996 perm/sec)   p_kst 1.297980e-03   p_cons 2.929293e-05   p_joint 6.010101e-05

Joint ci ratio: 3.578345e-01	ci left: 4.953875e-05	ci right 7.155799e-05	k: 119	n:1990000
Cons ci ratio: 5.103328e-01	ci left: 2.213165e-05	ci right 3.767745e-05	k: 58	n:1990000
KS ci ratio: 7.700541e-02	ci left: 1.250413e-03	ci right 1.351047e-03	k: 2587	n:1990000
SFPQ   1990000 perm   2005 sec   (992 perm/sec)   p_kst 1.300000e-03   p_cons 2.914573e-05   p_joint 5.979899e-05

Joint ci ratio: 3.563528e-01	ci left: 4.974621e-05	ci right 7.174487e-05	k: 120	n:2000000
Cons ci ratio: 5.103329e-01	ci left: 2.202099e-05	ci right 3.748907e-05	k: 58	n:2000000
KS ci ratio: 7.693128e-02	ci left: 1.246613e-03	ci right 1.346840e-03	k: 2592	n:2000000
SFPQ   2000000 perm   2023 sec   (988 perm/sec)   p_kst 1.296000e-03   p_cons 2.900000e-05   p_joint 6.000000e-05

Joint ci ratio: 3.548893e-01	ci left: 4.995178e-05	ci right 7.192971e-05	k: 121	n:2010000
Cons ci ratio: 5.103329e-01	ci left: 2.191143e-05	ci right 3.730255e-05	k: 58	n:2010000
KS ci ratio: 7.676866e-02	ci left: 1.245779e-03	ci right 1.345717e-03	k: 2603	n:2010000
SFPQ   2010000 perm   2041 sec   (985 perm/sec)   p_kst 1.295025e-03   p_cons 2.885572e-05   p_joint 6.019900e-05

Joint ci ratio: 3.520155e-01	ci left: 5.060670e-05	ci right 7.265127e-05	k: 123	n:2020000
Cons ci ratio: 5.060622e-01	ci left: 2.223449e-05	ci right 3.767593e-05	k: 59	n:2020000
KS ci ratio: 7.660706e-02	ci left: 1.244952e-03	ci right 1.344605e-03	k: 2614	n:2020000
SFPQ   2020000 perm   2059 sec   (981 perm/sec)   p_kst 1.294059e-03   p_cons 2.920792e-05   p_joint 6.089109e-05

Joint ci ratio: 3.548894e-01	ci left: 4.945964e-05	ci right 7.122104e-05	k: 121	n:2030000
Cons ci ratio: 5.060622e-01	ci left: 2.212496e-05	ci right 3.749034e-05	k: 59	n:2030000
KS ci ratio: 7.641735e-02	ci left: 1.245101e-03	ci right 1.344508e-03	k: 2627	n:2030000
SFPQ   2030000 perm   2077 sec   (977 perm/sec)   p_kst 1.294089e-03   p_cons 2.906404e-05   p_joint 5.960591e-05

Joint ci ratio: 3.548894e-01	ci left: 4.921719e-05	ci right 7.087192e-05	k: 121	n:2040000
Cons ci ratio: 5.060623e-01	ci left: 2.201651e-05	ci right 3.730656e-05	k: 59	n:2040000
KS ci ratio: 7.621459e-02	ci left: 1.245729e-03	ci right 1.344911e-03	k: 2641	n:2040000
SFPQ   2040000 perm   2095 sec   (974 perm/sec)   p_kst 1.294608e-03   p_cons 2.892157e-05   p_joint 5.931373e-05

Joint ci ratio: 3.548895e-01	ci left: 4.897711e-05	ci right 7.052621e-05	k: 121	n:2050000
Cons ci ratio: 5.060623e-01	ci left: 2.190911e-05	ci right 3.712458e-05	k: 59	n:2050000
KS ci ratio: 7.598480e-02	ci left: 1.247309e-03	ci right 1.346303e-03	k: 2657	n:2050000
SFPQ   2050000 perm   2113 sec   (970 perm/sec)   p_kst 1.296098e-03   p_cons 2.878049e-05   p_joint 5.902439e-05

Joint ci ratio: 3.520157e-01	ci left: 4.962404e-05	ci right 7.124057e-05	k: 123	n:2060000
Cons ci ratio: 5.060623e-01	ci left: 2.180276e-05	ci right 3.694436e-05	k: 59	n:2060000
KS ci ratio: 7.589931e-02	ci left: 1.244111e-03	ci right 1.342736e-03	k: 2663	n:2060000
SFPQ   2060000 perm   2132 sec   (966 perm/sec)   p_kst 1.292718e-03   p_cons 2.864078e-05   p_joint 5.970874e-05

Joint ci ratio: 3.520158e-01	ci left: 4.938431e-05	ci right 7.089641e-05	k: 123	n:2070000
Cons ci ratio: 5.060624e-01	ci left: 2.169743e-05	ci right 3.676589e-05	k: 59	n:2070000
KS ci ratio: 7.582833e-02	ci left: 1.240471e-03	ci right 1.338711e-03	k: 2668	n:2070000
SFPQ   2070000 perm   2151 sec   (962 perm/sec)   p_kst 1.288889e-03   p_cons 2.850242e-05   p_joint 5.942029e-05

Joint ci ratio: 3.506048e-01	ci left: 4.958523e-05	ci right 7.107859e-05	k: 124	n:2080000
Cons ci ratio: 5.060624e-01	ci left: 2.159311e-05	ci right 3.658913e-05	k: 59	n:2080000
KS ci ratio: 7.553162e-02	ci left: 1.244412e-03	ci right 1.342562e-03	k: 2689	n:2080000
SFPQ   2080000 perm   2170 sec   (959 perm/sec)   p_kst 1.292788e-03   p_cons 2.836538e-05   p_joint 5.961538e-05

Joint ci ratio: 3.506049e-01	ci left: 4.934798e-05	ci right 7.073850e-05	k: 124	n:2090000
Cons ci ratio: 5.060624e-01	ci left: 2.148980e-05	ci right 3.641406e-05	k: 59	n:2090000
KS ci ratio: 7.537770e-02	ci left: 1.243622e-03	ci right 1.341500e-03	k: 2700	n:2090000
SFPQ   2090000 perm   2188 sec   (955 perm/sec)   p_kst 1.291866e-03   p_cons 2.822967e-05   p_joint 5.933014e-05

Joint ci ratio: 3.506049e-01	ci left: 4.911299e-05	ci right 7.040165e-05	k: 124	n:2100000
Cons ci ratio: 5.060625e-01	ci left: 2.138746e-05	ci right 3.624066e-05	k: 59	n:2100000
KS ci ratio: 7.514153e-02	ci left: 1.245643e-03	ci right 1.343360e-03	k: 2717	n:2100000
SFPQ   2100000 perm   2207 sec   (951 perm/sec)   p_kst 1.293810e-03   p_cons 2.809524e-05   p_joint 5.904762e-05

Joint ci ratio: 3.506050e-01	ci left: 4.888022e-05	ci right 7.006800e-05	k: 124	n:2110000
Cons ci ratio: 5.060625e-01	ci left: 2.128610e-05	ci right 3.606891e-05	k: 59	n:2110000
KS ci ratio: 7.498997e-02	ci left: 1.244855e-03	ci right 1.342304e-03	k: 2728	n:2110000
SFPQ   2110000 perm   2226 sec   (948 perm/sec)   p_kst 1.292891e-03   p_cons 2.796209e-05   p_joint 5.876777e-05

Joint ci ratio: 3.506050e-01	ci left: 4.864965e-05	ci right 6.973749e-05	k: 124	n:2120000
Cons ci ratio: 5.060625e-01	ci left: 2.118569e-05	ci right 3.589877e-05	k: 59	n:2120000
KS ci ratio: 7.486669e-02	ci left: 1.243148e-03	ci right 1.340297e-03	k: 2737	n:2120000
SFPQ   2120000 perm   2245 sec   (944 perm/sec)   p_kst 1.291038e-03   p_cons 2.783019e-05   p_joint 5.849057e-05

Joint ci ratio: 3.478333e-01	ci left: 4.927787e-05	ci right 7.043108e-05	k: 126	n:2130000
Cons ci ratio: 5.060626e-01	ci left: 2.108623e-05	ci right 3.573023e-05	k: 59	n:2130000
KS ci ratio: 7.466241e-02	ci left: 1.244223e-03	ci right 1.341179e-03	k: 2752	n:2130000
SFPQ   2130000 perm   2264 sec   (941 perm/sec)   p_kst 1.292019e-03   p_cons 2.769953e-05   p_joint 5.915493e-05

Joint ci ratio: 3.478333e-01	ci left: 4.904760e-05	ci right 7.010197e-05	k: 126	n:2140000
Cons ci ratio: 5.060626e-01	ci left: 2.098770e-05	ci right 3.556327e-05	k: 59	n:2140000
KS ci ratio: 7.458130e-02	ci left: 1.241160e-03	ci right 1.337768e-03	k: 2758	n:2140000
SFPQ   2140000 perm   2283 sec   (937 perm/sec)   p_kst 1.288785e-03   p_cons 2.757009e-05   p_joint 5.887850e-05

Joint ci ratio: 3.478334e-01	ci left: 4.881947e-05	ci right 6.977591e-05	k: 126	n:2150000
Cons ci ratio: 5.060626e-01	ci left: 2.089008e-05	ci right 3.539786e-05	k: 59	n:2150000
KS ci ratio: 7.433911e-02	ci left: 1.243603e-03	ci right 1.340074e-03	k: 2776	n:2150000
SFPQ   2150000 perm   2302 sec   (934 perm/sec)   p_kst 1.291163e-03   p_cons 2.744186e-05   p_joint 5.860465e-05

Joint ci ratio: 3.478334e-01	ci left: 4.859345e-05	ci right 6.945288e-05	k: 126	n:2160000
Cons ci ratio: 5.060627e-01	ci left: 2.079337e-05	ci right 3.523398e-05	k: 59	n:2160000
KS ci ratio: 7.420568e-02	ci left: 1.242390e-03	ci right 1.338585e-03	k: 2786	n:2160000
SFPQ   2160000 perm   2321 sec   (931 perm/sec)   p_kst 1.289815e-03   p_cons 2.731481e-05   p_joint 5.833333e-05

Joint ci ratio: 3.478335e-01	ci left: 4.836952e-05	ci right 6.913282e-05	k: 126	n:2170000
Cons ci ratio: 5.018974e-01	ci left: 2.109975e-05	ci right 3.559059e-05	k: 60	n:2170000
KS ci ratio: 7.409949e-02	ci left: 1.240283e-03	ci right 1.336172e-03	k: 2794	n:2170000
SFPQ   2170000 perm   2340 sec   (927 perm/sec)   p_kst 1.287558e-03   p_cons 2.764977e-05   p_joint 5.806452e-05

Joint ci ratio: 3.464721e-01	ci left: 4.856636e-05	ci right 6.931425e-05	k: 127	n:2180000
Cons ci ratio: 4.938663e-01	ci left: 2.180513e-05	ci right 3.645912e-05	k: 62	n:2180000
KS ci ratio: 7.395413e-02	ci left: 1.239546e-03	ci right 1.335182e-03	k: 2805	n:2180000
SFPQ   2180000 perm   2360 sec   (924 perm/sec)   p_kst 1.286697e-03   p_cons 2.844037e-05   p_joint 5.825688e-05

Joint ci ratio: 3.451265e-01	ci left: 4.876156e-05	ci right 6.949387e-05	k: 128	n:2190000
Cons ci ratio: 4.938664e-01	ci left: 2.170557e-05	ci right 3.629264e-05	k: 62	n:2190000
KS ci ratio: 7.380963e-02	ci left: 1.238816e-03	ci right 1.334200e-03	k: 2816	n:2190000
SFPQ   2190000 perm   2379 sec   (921 perm/sec)   p_kst 1.285845e-03   p_cons 2.831050e-05   p_joint 5.844749e-05

Joint ci ratio: 3.451266e-01	ci left: 4.853992e-05	ci right 6.917799e-05	k: 128	n:2200000
Cons ci ratio: 4.899928e-01	ci left: 2.200504e-05	ci right 3.663820e-05	k: 63	n:2200000
KS ci ratio: 7.362688e-02	ci left: 1.239431e-03	ci right 1.334617e-03	k: 2830	n:2200000
SFPQ   2200000 perm   2398 sec   (918 perm/sec)   p_kst 1.286364e-03   p_cons 2.863636e-05   p_joint 5.818182e-05

Joint ci ratio: 3.437966e-01	ci left: 4.873363e-05	ci right 6.935645e-05	k: 129	n:2210000
Cons ci ratio: 4.862089e-01	ci left: 2.230224e-05	ci right 3.698020e-05	k: 64	n:2210000
KS ci ratio: 7.345841e-02	ci left: 1.239597e-03	ci right 1.334568e-03	k: 2843	n:2210000
SFPQ   2210000 perm   2417 sec   (914 perm/sec)   p_kst 1.286425e-03   p_cons 2.895928e-05   p_joint 5.837104e-05

Joint ci ratio: 3.451266e-01	ci left: 4.810262e-05	ci right 6.855477e-05	k: 128	n:2220000
Cons ci ratio: 4.862089e-01	ci left: 2.220178e-05	ci right 3.681362e-05	k: 64	n:2220000
KS ci ratio: 7.322696e-02	ci left: 1.241973e-03	ci right 1.336814e-03	k: 2861	n:2220000
SFPQ   2220000 perm   2437 sec   (911 perm/sec)   p_kst 1.288739e-03   p_cons 2.882883e-05   p_joint 5.765766e-05

Joint ci ratio: 3.451267e-01	ci left: 4.788691e-05	ci right 6.824735e-05	k: 128	n:2230000
Cons ci ratio: 4.862090e-01	ci left: 2.210222e-05	ci right 3.664854e-05	k: 64	n:2230000
KS ci ratio: 7.307394e-02	ci left: 1.241686e-03	ci right 1.336298e-03	k: 2873	n:2230000
SFPQ   2230000 perm   2457 sec   (908 perm/sec)   p_kst 1.288341e-03   p_cons 2.869955e-05   p_joint 5.739910e-05

Joint ci ratio: 3.451267e-01	ci left: 4.767313e-05	ci right 6.794268e-05	k: 128	n:2240000
Cons ci ratio: 4.862090e-01	ci left: 2.200355e-05	ci right 3.648493e-05	k: 64	n:2240000
KS ci ratio: 7.293453e-02	ci left: 1.240964e-03	ci right 1.335333e-03	k: 2884	n:2240000
SFPQ   2240000 perm   2477 sec   (904 perm/sec)   p_kst 1.287500e-03   p_cons 2.857143e-05   p_joint 5.714286e-05

Joint ci ratio: 3.437967e-01	ci left: 4.786725e-05	ci right 6.812345e-05	k: 129	n:2250000
Cons ci ratio: 4.862090e-01	ci left: 2.190575e-05	ci right 3.632278e-05	k: 64	n:2250000
KS ci ratio: 7.273308e-02	ci left: 1.242430e-03	ci right 1.336639e-03	k: 2900	n:2250000
SFPQ   2250000 perm   2496 sec   (901 perm/sec)   p_kst 1.288889e-03   p_cons 2.844444e-05   p_joint 5.733333e-05

Joint ci ratio: 3.437968e-01	ci left: 4.765545e-05	ci right 6.782202e-05	k: 129	n:2260000
Cons ci ratio: 4.862091e-01	ci left: 2.180883e-05	ci right 3.616206e-05	k: 64	n:2260000
KS ci ratio: 7.262058e-02	ci left: 1.240842e-03	ci right 1.334779e-03	k: 2909	n:2260000
SFPQ   2260000 perm   2517 sec   (898 perm/sec)   p_kst 1.287168e-03   p_cons 2.831858e-05   p_joint 5.707965e-05

Joint ci ratio: 3.437968e-01	ci left: 4.744551e-05	ci right 6.752325e-05	k: 129	n:2270000
Cons ci ratio: 4.862091e-01	ci left: 2.171275e-05	ci right 3.600275e-05	k: 64	n:2270000
KS ci ratio: 7.244650e-02	ci left: 1.241432e-03	ci right 1.335178e-03	k: 2923	n:2270000
SFPQ   2270000 perm   2537 sec   (895 perm/sec)   p_kst 1.287665e-03   p_cons 2.819383e-05   p_joint 5.682819e-05

Joint ci ratio: 3.437969e-01	ci left: 4.723742e-05	ci right 6.722710e-05	k: 129	n:2280000
Cons ci ratio: 4.862091e-01	ci left: 2.161752e-05	ci right 3.584485e-05	k: 64	n:2280000
KS ci ratio: 7.229831e-02	ci left: 1.241155e-03	ci right 1.334681e-03	k: 2935	n:2280000
SFPQ   2280000 perm   2557 sec   (892 perm/sec)   p_kst 1.287281e-03   p_cons 2.807018e-05   p_joint 5.657895e-05

Joint ci ratio: 3.411823e-01	ci left: 4.782939e-05	ci right 6.788172e-05	k: 131	n:2290000
Cons ci ratio: 4.825116e-01	ci left: 2.190645e-05	ci right 3.617795e-05	k: 65	n:2290000
KS ci ratio: 7.208984e-02	ci left: 1.243024e-03	ci right 1.336410e-03	k: 2952	n:2290000
SFPQ   2290000 perm   2577 sec   (889 perm/sec)   p_kst 1.289083e-03   p_cons 2.838428e-05   p_joint 5.720524e-05

Joint ci ratio: 3.398972e-01	ci left: 4.801904e-05	ci right 6.805840e-05	k: 132	n:2300000
Cons ci ratio: 4.825116e-01	ci left: 2.181121e-05	ci right 3.602066e-05	k: 65	n:2300000
KS ci ratio: 7.193168e-02	ci left: 1.243170e-03	ci right 1.336353e-03	k: 2965	n:2300000
SFPQ   2300000 perm   2597 sec   (886 perm/sec)   p_kst 1.289130e-03   p_cons 2.826087e-05   p_joint 5.739130e-05

Joint ci ratio: 3.386265e-01	ci left: 4.820719e-05	ci right 6.823342e-05	k: 133	n:2310000
Cons ci ratio: 4.825116e-01	ci left: 2.171679e-05	ci right 3.586473e-05	k: 65	n:2310000
KS ci ratio: 7.173839e-02	ci left: 1.244591e-03	ci right 1.337619e-03	k: 2981	n:2310000
SFPQ   2310000 perm   2617 sec   (883 perm/sec)   p_kst 1.290476e-03   p_cons 2.813853e-05   p_joint 5.757576e-05

Joint ci ratio: 3.386266e-01	ci left: 4.799940e-05	ci right 6.793931e-05	k: 133	n:2320000
Cons ci ratio: 4.825117e-01	ci left: 2.162318e-05	ci right 3.571014e-05	k: 65	n:2320000
KS ci ratio: 7.152278e-02	ci left: 1.246846e-03	ci right 1.339751e-03	k: 2999	n:2320000
SFPQ   2320000 perm   2637 sec   (880 perm/sec)   p_kst 1.292672e-03   p_cons 2.801724e-05   p_joint 5.732759e-05

Joint ci ratio: 3.373700e-01	ci left: 4.818616e-05	ci right 6.811320e-05	k: 134	n:2330000
Cons ci ratio: 4.825117e-01	ci left: 2.153038e-05	ci right 3.555687e-05	k: 65	n:2330000
KS ci ratio: 7.138017e-02	ci left: 1.246553e-03	ci right 1.339243e-03	k: 3011	n:2330000
SFPQ   2330000 perm   2657 sec   (877 perm/sec)   p_kst 1.292275e-03   p_cons 2.789700e-05   p_joint 5.751073e-05

Joint ci ratio: 3.361274e-01	ci left: 4.837146e-05	ci right 6.828547e-05	k: 135	n:2340000
Cons ci ratio: 4.788973e-01	ci left: 2.181391e-05	ci right 3.588370e-05	k: 66	n:2340000
KS ci ratio: 7.125022e-02	ci left: 1.245843e-03	ci right 1.338305e-03	k: 3022	n:2340000
SFPQ   2340000 perm   2678 sec   (874 perm/sec)   p_kst 1.291453e-03   p_cons 2.820513e-05   p_joint 5.769231e-05

Joint ci ratio: 3.361274e-01	ci left: 4.816562e-05	ci right 6.799489e-05	k: 135	n:2350000
Cons ci ratio: 4.788973e-01	ci left: 2.172108e-05	ci right 3.573100e-05	k: 66	n:2350000
KS ci ratio: 7.110923e-02	ci left: 1.245557e-03	ci right 1.337807e-03	k: 3034	n:2350000
SFPQ   2350000 perm   2698 sec   (871 perm/sec)   p_kst 1.291064e-03   p_cons 2.808511e-05   p_joint 5.744681e-05

Joint ci ratio: 3.361275e-01	ci left: 4.796153e-05	ci right 6.770678e-05	k: 135	n:2360000
Cons ci ratio: 4.788973e-01	ci left: 2.162904e-05	ci right 3.557960e-05	k: 66	n:2360000
KS ci ratio: 7.094578e-02	ci left: 1.246106e-03	ci right 1.338176e-03	k: 3048	n:2360000
SFPQ   2360000 perm   2719 sec   (868 perm/sec)   p_kst 1.291525e-03   p_cons 2.796610e-05   p_joint 5.720339e-05

Joint ci ratio: 3.361275e-01	ci left: 4.775916e-05	ci right 6.742110e-05	k: 135	n:2370000
Cons ci ratio: 4.788974e-01	ci left: 2.153778e-05	ci right 3.542948e-05	k: 66	n:2370000
KS ci ratio: 7.082976e-02	ci left: 1.244992e-03	ci right 1.336824e-03	k: 3058	n:2370000
SFPQ   2370000 perm   2740 sec   (865 perm/sec)   p_kst 1.290295e-03   p_cons 2.784810e-05   p_joint 5.696203e-05

Joint ci ratio: 3.348985e-01	ci left: 4.794326e-05	ci right 6.759325e-05	k: 136	n:2380000
Cons ci ratio: 4.788974e-01	ci left: 2.144729e-05	ci right 3.528062e-05	k: 66	n:2380000
KS ci ratio: 7.067973e-02	ci left: 1.245127e-03	ci right 1.336766e-03	k: 3071	n:2380000
SFPQ   2380000 perm   2761 sec   (862 perm/sec)   p_kst 1.290336e-03   p_cons 2.773109e-05   p_joint 5.714286e-05

Joint ci ratio: 3.348985e-01	ci left: 4.774266e-05	ci right 6.731043e-05	k: 136	n:2390000
Cons ci ratio: 4.753630e-01	ci left: 2.172562e-05	ci right 3.560138e-05	k: 67	n:2390000
KS ci ratio: 7.055356e-02	ci left: 1.244438e-03	ci right 1.335856e-03	k: 3082	n:2390000
SFPQ   2390000 perm   2782 sec   (859 perm/sec)   p_kst 1.289540e-03   p_cons 2.803347e-05   p_joint 5.690377e-05

Joint ci ratio: 3.348986e-01	ci left: 4.754373e-05	ci right 6.702998e-05	k: 136	n:2400000
Cons ci ratio: 4.719057e-01	ci left: 2.200201e-05	ci right 3.591912e-05	k: 68	n:2400000
KS ci ratio: 7.034842e-02	ci left: 1.246621e-03	ci right 1.337922e-03	k: 3100	n:2400000
SFPQ   2400000 perm   2802 sec   (856 perm/sec)   p_kst 1.291667e-03   p_cons 2.833333e-05   p_joint 5.666667e-05

Joint ci ratio: 3.348986e-01	ci left: 4.734646e-05	ci right 6.675184e-05	k: 136	n:2410000
Cons ci ratio: 4.719057e-01	ci left: 2.191071e-05	ci right 3.577007e-05	k: 68	n:2410000
KS ci ratio: 7.019014e-02	ci left: 1.247156e-03	ci right 1.338282e-03	k: 3114	n:2410000
SFPQ   2410000 perm   2823 sec   (854 perm/sec)   p_kst 1.292116e-03   p_cons 2.821577e-05   p_joint 5.643154e-05

Joint ci ratio: 3.348987e-01	ci left: 4.715081e-05	ci right 6.647601e-05	k: 136	n:2420000
Cons ci ratio: 4.719057e-01	ci left: 2.182017e-05	ci right 3.562226e-05	k: 68	n:2420000
KS ci ratio: 7.001052e-02	ci left: 1.248498e-03	ci right 1.339479e-03	k: 3130	n:2420000
SFPQ   2420000 perm   2844 sec   (851 perm/sec)   p_kst 1.293388e-03   p_cons 2.809917e-05   p_joint 5.619835e-05

Joint ci ratio: 3.348987e-01	ci left: 4.695677e-05	ci right 6.620245e-05	k: 136	n:2430000
Cons ci ratio: 4.719057e-01	ci left: 2.173038e-05	ci right 3.547567e-05	k: 68	n:2430000
KS ci ratio: 6.983228e-02	ci left: 1.249829e-03	ci right 1.340666e-03	k: 3146	n:2430000
SFPQ   2430000 perm   2865 sec   (848 perm/sec)   p_kst 1.294650e-03   p_cons 2.798354e-05   p_joint 5.596708e-05

Joint ci ratio: 3.348987e-01	ci left: 4.676432e-05	ci right 6.593113e-05	k: 136	n:2440000
Cons ci ratio: 4.719058e-01	ci left: 2.164132e-05	ci right 3.533028e-05	k: 68	n:2440000
KS ci ratio: 6.973269e-02	ci left: 1.248331e-03	ci right 1.338925e-03	k: 3155	n:2440000
SFPQ   2440000 perm   2887 sec   (845 perm/sec)   p_kst 1.293033e-03   p_cons 2.786885e-05   p_joint 5.573770e-05

Joint ci ratio: 3.348988e-01	ci left: 4.657345e-05	ci right 6.566202e-05	k: 136	n:2450000
Cons ci ratio: 4.685228e-01	ci left: 2.191277e-05	ci right 3.564228e-05	k: 69	n:2450000
KS ci ratio: 6.950173e-02	ci left: 1.251658e-03	ci right 1.342180e-03	k: 3176	n:2450000
SFPQ   2450000 perm   2908 sec   (842 perm/sec)   p_kst 1.296327e-03   p_cons 2.816327e-05   p_joint 5.551020e-05

Joint ci ratio: 3.348988e-01	ci left: 4.638413e-05	ci right 6.539511e-05	k: 136	n:2460000
Cons ci ratio: 4.685229e-01	ci left: 2.182369e-05	ci right 3.549739e-05	k: 69	n:2460000
KS ci ratio: 6.935997e-02	ci left: 1.251763e-03	ci right 1.342101e-03	k: 3189	n:2460000
SFPQ   2460000 perm   2930 sec   (840 perm/sec)   p_kst 1.296341e-03   p_cons 2.804878e-05   p_joint 5.528455e-05

Joint ci ratio: 3.348988e-01	ci left: 4.619633e-05	ci right 6.513035e-05	k: 136	n:2470000
Cons ci ratio: 4.652116e-01	ci left: 2.209255e-05	ci right 3.580585e-05	k: 70	n:2470000
KS ci ratio: 6.925155e-02	ci left: 1.250673e-03	ci right 1.340786e-03	k: 3199	n:2470000
SFPQ   2470000 perm   2951 sec   (837 perm/sec)   p_kst 1.295142e-03   p_cons 2.834008e-05   p_joint 5.506073e-05

Joint ci ratio: 3.336832e-01	ci left: 4.637944e-05	ci right 6.530467e-05	k: 137	n:2480000
Cons ci ratio: 4.587945e-01	ci left: 2.271602e-05	ci right 3.656119e-05	k: 72	n:2480000
KS ci ratio: 6.908978e-02	ci left: 1.251574e-03	ci right 1.341532e-03	k: 3214	n:2480000
SFPQ   2480000 perm   2973 sec   (834 perm/sec)   p_kst 1.295968e-03   p_cons 2.903226e-05   p_joint 5.524194e-05

Joint ci ratio: 3.534457e-01	ci left: 4.068836e-05	ci right 5.850100e-05	k: 122	n:2490000
Cons ci ratio: 4.587945e-01	ci left: 2.262479e-05	ci right 3.641436e-05	k: 72	n:2490000
KS ci ratio: 6.895052e-02	ci left: 1.251679e-03	ci right 1.341456e-03	k: 3227	n:2490000
SFPQ   2490000 perm   2995 sec   (831 perm/sec)   p_kst 1.295984e-03   p_cons 2.891566e-05   p_joint 4.899598e-05

Joint ci ratio: 3.506066e-01	ci left: 4.125488e-05	ci right 5.913744e-05	k: 124	n:2500000
Cons ci ratio: 4.556839e-01	ci left: 2.288821e-05	ci right 3.671448e-05	k: 73	n:2500000
KS ci ratio: 6.881209e-02	ci left: 1.251782e-03	ci right 1.341379e-03	k: 3240	n:2500000
SFPQ   2500000 perm   3017 sec   (829 perm/sec)   p_kst 1.296000e-03   p_cons 2.920000e-05   p_joint 4.960000e-05

Joint ci ratio: 3.492125e-01	ci left: 4.145391e-05	ci right 5.933512e-05	k: 125	n:2510000
Cons ci ratio: 4.556839e-01	ci left: 2.279702e-05	ci right 3.656821e-05	k: 73	n:2510000
KS ci ratio: 6.870622e-02	ci left: 1.250711e-03	ci right 1.340088e-03	k: 3250	n:2510000
SFPQ   2510000 perm   3039 sec   (826 perm/sec)   p_kst 1.294821e-03   p_cons 2.908367e-05   p_joint 4.980080e-05

Joint ci ratio: 3.478349e-01	ci left: 4.165150e-05	ci right 5.953109e-05	k: 126	n:2520000
Cons ci ratio: 4.556840e-01	ci left: 2.270655e-05	ci right 3.642309e-05	k: 73	n:2520000
KS ci ratio: 6.850624e-02	ci left: 1.253158e-03	ci right 1.342439e-03	k: 3269	n:2520000
SFPQ   2520000 perm   3061 sec   (823 perm/sec)   p_kst 1.297222e-03   p_cons 2.896825e-05   p_joint 5.000000e-05

Joint ci ratio: 3.478350e-01	ci left: 4.148687e-05	ci right 5.929579e-05	k: 126	n:2530000
Cons ci ratio: 4.526358e-01	ci left: 2.296683e-05	ci right 3.671932e-05	k: 74	n:2530000
KS ci ratio: 6.840177e-02	ci left: 1.252090e-03	ci right 1.341153e-03	k: 3279	n:2530000
SFPQ   2530000 perm   3083 sec   (821 perm/sec)   p_kst 1.296047e-03   p_cons 2.924901e-05   p_joint 4.980237e-05

Joint ci ratio: 3.478350e-01	ci left: 4.132354e-05	ci right 5.906234e-05	k: 126	n:2540000
Cons ci ratio: 4.526358e-01	ci left: 2.287641e-05	ci right 3.657476e-05	k: 74	n:2540000
KS ci ratio: 6.826662e-02	ci left: 1.252191e-03	ci right 1.341078e-03	k: 3292	n:2540000
SFPQ   2540000 perm   3105 sec   (818 perm/sec)   p_kst 1.296063e-03   p_cons 2.913386e-05   p_joint 4.960630e-05

Joint ci ratio: 3.451280e-01	ci left: 4.187755e-05	ci right 5.968302e-05	k: 128	n:2550000
Cons ci ratio: 4.496480e-01	ci left: 2.313429e-05	ci right 3.686776e-05	k: 75	n:2550000
KS ci ratio: 6.816324e-02	ci left: 1.251135e-03	ci right 1.339808e-03	k: 3302	n:2550000
SFPQ   2550000 perm   3127 sec   (815 perm/sec)   p_kst 1.294902e-03   p_cons 2.941176e-05   p_joint 5.019608e-05

Joint ci ratio: 3.451280e-01	ci left: 4.171397e-05	ci right 5.944988e-05	k: 128	n:2560000
Cons ci ratio: 4.467187e-01	ci left: 2.339044e-05	ci right 3.715819e-05	k: 76	n:2560000
KS ci ratio: 6.803977e-02	ci left: 1.250855e-03	ci right 1.339341e-03	k: 3314	n:2560000
SFPQ   2560000 perm   3150 sec   (813 perm/sec)   p_kst 1.294531e-03   p_cons 2.968750e-05   p_joint 5.000000e-05

Joint ci ratio: 3.451280e-01	ci left: 4.155166e-05	ci right 5.921856e-05	k: 128	n:2570000
Cons ci ratio: 4.438458e-01	ci left: 2.364489e-05	ci right 3.744608e-05	k: 77	n:2570000
KS ci ratio: 6.791697e-02	ci left: 1.250578e-03	ci right 1.338879e-03	k: 3326	n:2570000
SFPQ   2570000 perm   3172 sec   (810 perm/sec)   p_kst 1.294163e-03   p_cons 2.996109e-05   p_joint 4.980545e-05

Joint ci ratio: 3.437980e-01	ci left: 4.174467e-05	ci right 5.941003e-05	k: 129	n:2580000
Cons ci ratio: 4.438458e-01	ci left: 2.355325e-05	ci right 3.730094e-05	k: 77	n:2580000
KS ci ratio: 6.779483e-02	ci left: 1.250303e-03	ci right 1.338419e-03	k: 3338	n:2580000
SFPQ   2580000 perm   3195 sec   (808 perm/sec)   p_kst 1.293798e-03   p_cons 2.984496e-05   p_joint 5.000000e-05

Joint ci ratio: 3.563552e-01	ci left: 3.841402e-05	ci right 5.540152e-05	k: 120	n:2590000
Cons ci ratio: 4.438458e-01	ci left: 2.346231e-05	ci right 3.715692e-05	k: 77	n:2590000
KS ci ratio: 6.767334e-02	ci left: 1.250030e-03	ci right 1.337963e-03	k: 3350	n:2590000
SFPQ   2590000 perm   3218 sec   (805 perm/sec)   p_kst 1.293436e-03   p_cons 2.972973e-05   p_joint 4.633205e-05

Joint ci ratio: 3.563553e-01	ci left: 3.826627e-05	ci right 5.518844e-05	k: 120	n:2600000
Cons ci ratio: 4.438459e-01	ci left: 2.337207e-05	ci right 3.701401e-05	k: 77	n:2600000
KS ci ratio: 6.756257e-02	ci left: 1.249382e-03	ci right 1.337120e-03	k: 3361	n:2600000
SFPQ   2600000 perm   3240 sec   (802 perm/sec)   p_kst 1.292692e-03   p_cons 2.961538e-05   p_joint 4.615385e-05

Joint ci ratio: 3.563553e-01	ci left: 3.811965e-05	ci right 5.497699e-05	k: 120	n:2610000
Cons ci ratio: 4.438459e-01	ci left: 2.328252e-05	ci right 3.687220e-05	k: 77	n:2610000
KS ci ratio: 6.746235e-02	ci left: 1.248362e-03	ci right 1.335893e-03	k: 3371	n:2610000
SFPQ   2610000 perm   3263 sec   (800 perm/sec)   p_kst 1.291571e-03   p_cons 2.950192e-05   p_joint 4.597701e-05

Joint ci ratio: 3.563553e-01	ci left: 3.797416e-05	ci right 5.476715e-05	k: 120	n:2620000
Cons ci ratio: 4.438459e-01	ci left: 2.319365e-05	ci right 3.673146e-05	k: 77	n:2620000
KS ci ratio: 6.726308e-02	ci left: 1.251102e-03	ci right 1.338556e-03	k: 3391	n:2620000
SFPQ   2620000 perm   3285 sec   (797 perm/sec)   p_kst 1.294275e-03   p_cons 2.938931e-05   p_joint 4.580153e-05

Joint ci ratio: 3.563554e-01	ci left: 3.782977e-05	ci right 5.455891e-05	k: 120	n:2630000
Cons ci ratio: 4.438459e-01	ci left: 2.310546e-05	ci right 3.659180e-05	k: 77	n:2630000
KS ci ratio: 6.713455e-02	ci left: 1.251205e-03	ci right 1.338492e-03	k: 3404	n:2630000
SFPQ   2630000 perm   3308 sec   (795 perm/sec)   p_kst 1.294297e-03   p_cons 2.927757e-05   p_joint 4.562738e-05

Joint ci ratio: 3.563554e-01	ci left: 3.768647e-05	ci right 5.435225e-05	k: 120	n:2640000
Cons ci ratio: 4.438460e-01	ci left: 2.301794e-05	ci right 3.645320e-05	k: 77	n:2640000
KS ci ratio: 6.700676e-02	ci left: 1.251307e-03	ci right 1.338429e-03	k: 3417	n:2640000
SFPQ   2640000 perm   3331 sec   (793 perm/sec)   p_kst 1.294318e-03   p_cons 2.916667e-05   p_joint 4.545455e-05

Joint ci ratio: 3.548919e-01	ci left: 3.788791e-05	ci right 5.455808e-05	k: 121	n:2650000
Cons ci ratio: 4.410278e-01	ci left: 2.326639e-05	ci right 3.673478e-05	k: 78	n:2650000
KS ci ratio: 6.681149e-02	ci left: 1.254006e-03	ci right 1.341052e-03	k: 3437	n:2650000
SFPQ   2650000 perm   3354 sec   (790 perm/sec)   p_kst 1.296981e-03   p_cons 2.943396e-05   p_joint 4.566038e-05

Joint ci ratio: 3.548919e-01	ci left: 3.774547e-05	ci right 5.435298e-05	k: 121	n:2660000
Cons ci ratio: 4.410278e-01	ci left: 2.317893e-05	ci right 3.659668e-05	k: 78	n:2660000
KS ci ratio: 6.672426e-02	ci left: 1.252619e-03	ci right 1.339450e-03	k: 3446	n:2660000
SFPQ   2660000 perm   3377 sec   (788 perm/sec)   p_kst 1.295489e-03   p_cons 2.932331e-05   p_joint 4.548872e-05

Joint ci ratio: 3.534463e-01	ci left: 3.794532e-05	ci right 5.455713e-05	k: 122	n:2670000
Cons ci ratio: 4.410278e-01	ci left: 2.309211e-05	ci right 3.645962e-05	k: 78	n:2670000
KS ci ratio: 6.659879e-02	ci left: 1.252715e-03	ci right 1.339384e-03	k: 3459	n:2670000
SFPQ   2670000 perm   3400 sec   (785 perm/sec)   p_kst 1.295506e-03   p_cons 2.921348e-05   p_joint 4.569288e-05

Joint ci ratio: 3.534463e-01	ci left: 3.780373e-05	ci right 5.435355e-05	k: 122	n:2680000
Cons ci ratio: 4.410279e-01	ci left: 2.300595e-05	ci right 3.632357e-05	k: 78	n:2680000
KS ci ratio: 6.644530e-02	ci left: 1.253912e-03	ci right 1.340455e-03	k: 3475	n:2680000
SFPQ   2680000 perm   3423 sec   (783 perm/sec)   p_kst 1.296642e-03   p_cons 2.910448e-05   p_joint 4.552239e-05

Joint ci ratio: 3.534464e-01	ci left: 3.766320e-05	ci right 5.415150e-05	k: 122	n:2690000
Cons ci ratio: 4.355489e-01	ci left: 2.358186e-05	ci right 3.701359e-05	k: 80	n:2690000
KS ci ratio: 6.628336e-02	ci left: 1.255465e-03	ci right 1.341897e-03	k: 3492	n:2690000
SFPQ   2690000 perm   3446 sec   (781 perm/sec)   p_kst 1.298141e-03   p_cons 2.973978e-05   p_joint 4.535316e-05

Joint ci ratio: 3.534464e-01	ci left: 3.752370e-05	ci right 5.395094e-05	k: 122	n:2700000
Cons ci ratio: 4.355489e-01	ci left: 2.349452e-05	ci right 3.687651e-05	k: 80	n:2700000
KS ci ratio: 6.616981e-02	ci left: 1.255186e-03	ci right 1.341445e-03	k: 3504	n:2700000
SFPQ   2700000 perm   3470 sec   (778 perm/sec)   p_kst 1.297778e-03   p_cons 2.962963e-05   p_joint 4.518519e-05

Joint ci ratio: 3.520183e-01	ci left: 3.772155e-05	ci right 5.415342e-05	k: 123	n:2710000
Cons ci ratio: 4.355490e-01	ci left: 2.340783e-05	ci right 3.674043e-05	k: 80	n:2710000
KS ci ratio: 6.600049e-02	ci left: 1.257087e-03	ci right 1.343247e-03	k: 3522	n:2710000
SFPQ   2710000 perm   3493 sec   (776 perm/sec)   p_kst 1.299631e-03   p_cons 2.952030e-05   p_joint 4.538745e-05

Joint ci ratio: 3.520183e-01	ci left: 3.758287e-05	ci right 5.395433e-05	k: 123	n:2720000
Cons ci ratio: 4.355490e-01	ci left: 2.332177e-05	ci right 3.660536e-05	k: 80	n:2720000
KS ci ratio: 6.588839e-02	ci left: 1.256804e-03	ci right 1.342793e-03	k: 3534	n:2720000
SFPQ   2720000 perm   3516 sec   (774 perm/sec)   p_kst 1.299265e-03   p_cons 2.941176e-05   p_joint 4.522059e-05

Joint ci ratio: 3.506074e-01	ci left: 3.777918e-05	ci right 5.415519e-05	k: 124	n:2730000
Cons ci ratio: 4.355490e-01	ci left: 2.323634e-05	ci right 3.647127e-05	k: 80	n:2730000
KS ci ratio: 6.579543e-02	ci left: 1.255803e-03	ci right 1.341597e-03	k: 3544	n:2730000
SFPQ   2730000 perm   3540 sec   (771 perm/sec)   p_kst 1.298168e-03   p_cons 2.930403e-05   p_joint 4.542125e-05

Joint ci ratio: 3.506074e-01	ci left: 3.764130e-05	ci right 5.395754e-05	k: 124	n:2740000
Cons ci ratio: 4.355490e-01	ci left: 2.315153e-05	ci right 3.633816e-05	k: 80	n:2740000
KS ci ratio: 6.568436e-02	ci left: 1.255527e-03	ci right 1.341153e-03	k: 3556	n:2740000
SFPQ   2740000 perm   3564 sec   (769 perm/sec)   p_kst 1.297810e-03   p_cons 2.919708e-05   p_joint 4.525547e-05

Joint ci ratio: 3.506074e-01	ci left: 3.750442e-05	ci right 5.376134e-05	k: 124	n:2750000
Cons ci ratio: 4.355491e-01	ci left: 2.306735e-05	ci right 3.620603e-05	k: 80	n:2750000
KS ci ratio: 6.555547e-02	ci left: 1.255969e-03	ci right 1.341450e-03	k: 3570	n:2750000
SFPQ   2750000 perm   3587 sec   (767 perm/sec)   p_kst 1.298182e-03   p_cons 2.909091e-05   p_joint 4.509091e-05

Joint ci ratio: 3.492133e-01	ci left: 3.769901e-05	ci right 5.396058e-05	k: 125	n:2760000
Cons ci ratio: 4.355491e-01	ci left: 2.298377e-05	ci right 3.607484e-05	k: 80	n:2760000
KS ci ratio: 6.542733e-02	ci left: 1.256408e-03	ci right 1.341745e-03	k: 3584	n:2760000
SFPQ   2760000 perm   3611 sec   (764 perm/sec)   p_kst 1.298551e-03   p_cons 2.898551e-05   p_joint 4.528986e-05

Joint ci ratio: 3.492134e-01	ci left: 3.756291e-05	ci right 5.376578e-05	k: 125	n:2770000
Cons ci ratio: 4.355491e-01	ci left: 2.290080e-05	ci right 3.594461e-05	k: 80	n:2770000
KS ci ratio: 6.534540e-02	ci left: 1.255068e-03	ci right 1.340204e-03	k: 3593	n:2770000
SFPQ   2770000 perm   3635 sec   (762 perm/sec)   p_kst 1.297112e-03   p_cons 2.888087e-05   p_joint 4.512635e-05

Joint ci ratio: 3.492134e-01	ci left: 3.742780e-05	ci right 5.357238e-05	k: 125	n:2780000
Cons ci ratio: 4.355491e-01	ci left: 2.281842e-05	ci right 3.581531e-05	k: 80	n:2780000
KS ci ratio: 6.524565e-02	ci left: 1.254446e-03	ci right 1.339404e-03	k: 3604	n:2780000
SFPQ   2780000 perm   3659 sec   (760 perm/sec)   p_kst 1.296403e-03   p_cons 2.877698e-05   p_joint 4.496403e-05

Joint ci ratio: 3.492134e-01	ci left: 3.729365e-05	ci right 5.338036e-05	k: 125	n:2790000
Cons ci ratio: 4.355492e-01	ci left: 2.273663e-05	ci right 3.568694e-05	k: 80	n:2790000
KS ci ratio: 6.510131e-02	ci left: 1.255591e-03	ci right 1.340432e-03	k: 3620	n:2790000
SFPQ   2790000 perm   3683 sec   (758 perm/sec)   p_kst 1.297491e-03   p_cons 2.867384e-05   p_joint 4.480287e-05

Joint ci ratio: 3.492134e-01	ci left: 3.716045e-05	ci right 5.318972e-05	k: 125	n:2800000
Cons ci ratio: 4.355492e-01	ci left: 2.265543e-05	ci right 3.555949e-05	k: 80	n:2800000
KS ci ratio: 6.502060e-02	ci left: 1.254269e-03	ci right 1.338911e-03	k: 3629	n:2800000
SFPQ   2800000 perm   3707 sec   (755 perm/sec)   p_kst 1.296071e-03   p_cons 2.857143e-05   p_joint 4.464286e-05

Joint ci ratio: 3.478358e-01	ci left: 3.735293e-05	ci right 5.338734e-05	k: 126	n:2810000
Cons ci ratio: 4.328852e-01	ci left: 2.289177e-05	ci right 3.582749e-05	k: 81	n:2810000
KS ci ratio: 6.490448e-02	ci left: 1.254356e-03	ci right 1.338848e-03	k: 3642	n:2810000
SFPQ   2810000 perm   3732 sec   (753 perm/sec)   p_kst 1.296085e-03   p_cons 2.882562e-05   p_joint 4.483986e-05

Joint ci ratio: 3.464744e-01	ci left: 3.754417e-05	ci right 5.358343e-05	k: 127	n:2820000
Cons ci ratio: 4.328852e-01	ci left: 2.281059e-05	ci right 3.570044e-05	k: 81	n:2820000
KS ci ratio: 6.478012e-02	ci left: 1.254792e-03	ci right 1.339145e-03	k: 3656	n:2820000
SFPQ   2820000 perm   3756 sec   (751 perm/sec)   p_kst 1.296454e-03   p_cons 2.872340e-05   p_joint 4.503546e-05

Joint ci ratio: 3.464744e-01	ci left: 3.741150e-05	ci right 5.339409e-05	k: 127	n:2830000
Cons ci ratio: 4.328852e-01	ci left: 2.272999e-05	ci right 3.557429e-05	k: 81	n:2830000
KS ci ratio: 6.471828e-02	ci left: 1.252792e-03	ci right 1.336927e-03	k: 3663	n:2830000
SFPQ   2830000 perm   3781 sec   (749 perm/sec)   p_kst 1.294346e-03   p_cons 2.862191e-05   p_joint 4.487633e-05

Joint ci ratio: 3.464745e-01	ci left: 3.727977e-05	ci right 5.320608e-05	k: 127	n:2840000
Cons ci ratio: 4.328853e-01	ci left: 2.264995e-05	ci right 3.544903e-05	k: 81	n:2840000
KS ci ratio: 6.455106e-02	ci left: 1.254963e-03	ci right 1.339017e-03	k: 3682	n:2840000
SFPQ   2840000 perm   3805 sec   (746 perm/sec)   p_kst 1.296479e-03   p_cons 2.852113e-05   p_joint 4.471831e-05

Joint ci ratio: 3.464745e-01	ci left: 3.714897e-05	ci right 5.301939e-05	k: 127	n:2850000
Cons ci ratio: 4.328853e-01	ci left: 2.257048e-05	ci right 3.532465e-05	k: 81	n:2850000
KS ci ratio: 6.439383e-02	ci left: 1.256773e-03	ci right 1.340737e-03	k: 3700	n:2850000
SFPQ   2850000 perm   3830 sec   (744 perm/sec)   p_kst 1.298246e-03   p_cons 2.842105e-05   p_joint 4.456140e-05

Joint ci ratio: 3.464745e-01	ci left: 3.701907e-05	ci right 5.283401e-05	k: 127	n:2860000
Cons ci ratio: 4.328853e-01	ci left: 2.249156e-05	ci right 3.520114e-05	k: 81	n:2860000
KS ci ratio: 6.426371e-02	ci left: 1.257539e-03	ci right 1.341378e-03	k: 3715	n:2860000
SFPQ   2860000 perm   3854 sec   (742 perm/sec)   p_kst 1.298951e-03   p_cons 2.832168e-05   p_joint 4.440559e-05

Joint ci ratio: 3.464745e-01	ci left: 3.689009e-05	ci right 5.264992e-05	k: 127	n:2870000
Cons ci ratio: 4.328853e-01	ci left: 2.241319e-05	ci right 3.507849e-05	k: 81	n:2870000
KS ci ratio: 6.416883e-02	ci left: 1.256929e-03	ci right 1.340598e-03	k: 3726	n:2870000
SFPQ   2870000 perm   3879 sec   (740 perm/sec)   p_kst 1.298258e-03   p_cons 2.822300e-05   p_joint 4.425087e-05

Joint ci ratio: 3.437989e-01	ci left: 3.739625e-05	ci right 5.322151e-05	k: 129	n:2880000
Cons ci ratio: 4.302696e-01	ci left: 2.264487e-05	ci right 3.534141e-05	k: 82	n:2880000
KS ci ratio: 6.404864e-02	ci left: 1.257348e-03	ci right 1.340882e-03	k: 3740	n:2880000
SFPQ   2880000 perm   3904 sec   (738 perm/sec)   p_kst 1.298611e-03   p_cons 2.847222e-05   p_joint 4.479167e-05

Joint ci ratio: 3.437990e-01	ci left: 3.726685e-05	ci right 5.303735e-05	k: 129	n:2890000
Cons ci ratio: 4.302696e-01	ci left: 2.256651e-05	ci right 3.521913e-05	k: 82	n:2890000
KS ci ratio: 6.395470e-02	ci left: 1.256742e-03	ci right 1.340110e-03	k: 3751	n:2890000
SFPQ   2890000 perm   3929 sec   (736 perm/sec)   p_kst 1.297924e-03   p_cons 2.837370e-05   p_joint 4.463668e-05

Joint ci ratio: 3.424842e-01	ci left: 3.745346e-05	ci right 5.322889e-05	k: 130	n:2900000
Cons ci ratio: 4.302697e-01	ci left: 2.248869e-05	ci right 3.509768e-05	k: 82	n:2900000
KS ci ratio: 6.384419e-02	ci left: 1.256820e-03	ci right 1.340043e-03	k: 3764	n:2900000
SFPQ   2900000 perm   3954 sec   (733 perm/sec)   p_kst 1.297931e-03   p_cons 2.827586e-05   p_joint 4.482759e-05

Joint ci ratio: 3.424842e-01	ci left: 3.732476e-05	ci right 5.304598e-05	k: 130	n:2910000
Cons ci ratio: 4.302697e-01	ci left: 2.241141e-05	ci right 3.497707e-05	k: 82	n:2910000
KS ci ratio: 6.375961e-02	ci left: 1.255883e-03	ci right 1.338929e-03	k: 3774	n:2910000
SFPQ   2910000 perm   3979 sec   (731 perm/sec)   p_kst 1.296907e-03   p_cons 2.817869e-05   p_joint 4.467354e-05

Joint ci ratio: 3.424842e-01	ci left: 3.719693e-05	ci right 5.286431e-05	k: 130	n:2920000
Cons ci ratio: 4.302697e-01	ci left: 2.233466e-05	ci right 3.485729e-05	k: 82	n:2920000
KS ci ratio: 6.363329e-02	ci left: 1.256637e-03	ci right 1.339563e-03	k: 3789	n:2920000
SFPQ   2920000 perm   4005 sec   (729 perm/sec)   p_kst 1.297603e-03   p_cons 2.808219e-05   p_joint 4.452055e-05

Joint ci ratio: 3.451291e-01	ci left: 3.644631e-05	ci right 5.194259e-05	k: 128	n:2930000
Cons ci ratio: 4.302697e-01	ci left: 2.225843e-05	ci right 3.473832e-05	k: 82	n:2930000
KS ci ratio: 6.350771e-02	ci left: 1.257386e-03	ci right 1.340192e-03	k: 3804	n:2930000
SFPQ   2930000 perm   4030 sec   (727 perm/sec)   p_kst 1.298294e-03   p_cons 2.798635e-05   p_joint 4.368601e-05

Joint ci ratio: 3.451291e-01	ci left: 3.632235e-05	ci right 5.176592e-05	k: 128	n:2940000
Cons ci ratio: 4.302698e-01	ci left: 2.218272e-05	ci right 3.462016e-05	k: 82	n:2940000
KS ci ratio: 6.339950e-02	ci left: 1.257461e-03	ci right 1.340125e-03	k: 3817	n:2940000
SFPQ   2940000 perm   4055 sec   (725 perm/sec)   p_kst 1.298299e-03   p_cons 2.789116e-05   p_joint 4.353741e-05

Joint ci ratio: 3.451292e-01	ci left: 3.619922e-05	ci right 5.159044e-05	k: 128	n:2950000
Cons ci ratio: 4.302698e-01	ci left: 2.210753e-05	ci right 3.450281e-05	k: 82	n:2950000
KS ci ratio: 6.331667e-02	ci left: 1.256534e-03	ci right 1.339026e-03	k: 3827	n:2950000
SFPQ   2950000 perm   4081 sec   (723 perm/sec)   p_kst 1.297288e-03   p_cons 2.779661e-05   p_joint 4.338983e-05

Joint ci ratio: 3.437991e-01	ci left: 3.638554e-05	ci right 5.178310e-05	k: 129	n:2960000
Cons ci ratio: 4.251775e-01	ci left: 2.263577e-05	ci right 3.513424e-05	k: 84	n:2960000
KS ci ratio: 6.324241e-02	ci left: 1.255282e-03	ci right 1.337591e-03	k: 3836	n:2960000
SFPQ   2960000 perm   4106 sec   (721 perm/sec)   p_kst 1.295946e-03   p_cons 2.837838e-05   p_joint 4.358108e-05

Joint ci ratio: 3.437992e-01	ci left: 3.626303e-05	ci right 5.160874e-05	k: 129	n:2970000
Cons ci ratio: 4.251775e-01	ci left: 2.255955e-05	ci right 3.501595e-05	k: 84	n:2970000
KS ci ratio: 6.311093e-02	ci left: 1.256357e-03	ci right 1.338559e-03	k: 3852	n:2970000
SFPQ   2970000 perm   4132 sec   (719 perm/sec)   p_kst 1.296970e-03   p_cons 2.828283e-05   p_joint 4.343434e-05

Joint ci ratio: 3.437992e-01	ci left: 3.614134e-05	ci right 5.143556e-05	k: 129	n:2980000
Cons ci ratio: 4.251776e-01	ci left: 2.248385e-05	ci right 3.489845e-05	k: 84	n:2980000
KS ci ratio: 6.301289e-02	ci left: 1.256105e-03	ci right 1.338158e-03	k: 3864	n:2980000
SFPQ   2980000 perm   4158 sec   (717 perm/sec)   p_kst 1.296644e-03   p_cons 2.818792e-05   p_joint 4.328859e-05

Joint ci ratio: 3.437992e-01	ci left: 3.602047e-05	ci right 5.126354e-05	k: 129	n:2990000
Cons ci ratio: 4.226983e-01	ci left: 2.270741e-05	ci right 3.515166e-05	k: 85	n:2990000
KS ci ratio: 6.292344e-02	ci left: 1.255525e-03	ci right 1.337419e-03	k: 3875	n:2990000
SFPQ   2990000 perm   4183 sec   (715 perm/sec)   p_kst 1.295987e-03   p_cons 2.842809e-05   p_joint 4.314381e-05

Joint ci ratio: 3.411846e-01	ci left: 3.650973e-05	ci right 5.181644e-05	k: 131	n:3000000
Cons ci ratio: 4.202619e-01	ci left: 2.292970e-05	ci right 3.540298e-05	k: 86	n:3000000
KS ci ratio: 6.281009e-02	ci left: 1.255933e-03	ci right 1.337701e-03	k: 3889	n:3000000
SFPQ   3000000 perm   4208 sec   (713 perm/sec)   p_kst 1.296333e-03   p_cons 2.866667e-05   p_joint 4.366667e-05

Joint ci ratio: 3.398995e-01	ci left: 3.669225e-05	ci right 5.200482e-05	k: 132	n:3010000
Cons ci ratio: 4.202620e-01	ci left: 2.285352e-05	ci right 3.528536e-05	k: 86	n:3010000
KS ci ratio: 6.274566e-02	ci left: 1.254376e-03	ci right 1.335957e-03	k: 3897	n:3010000
SFPQ   3010000 perm   4233 sec   (711 perm/sec)   p_kst 1.294684e-03   p_cons 2.857143e-05   p_joint 4.385382e-05

Joint ci ratio: 3.398996e-01	ci left: 3.657076e-05	ci right 5.183262e-05	k: 132	n:3020000
Cons ci ratio: 4.202620e-01	ci left: 2.277784e-05	ci right 3.516852e-05	k: 86	n:3020000
KS ci ratio: 6.267339e-02	ci left: 1.253156e-03	ci right 1.334560e-03	k: 3906	n:3020000
SFPQ   3020000 perm   4258 sec   (709 perm/sec)   p_kst 1.293377e-03   p_cons 2.847682e-05   p_joint 4.370861e-05

Joint ci ratio: 3.398996e-01	ci left: 3.645006e-05	ci right 5.166156e-05	k: 132	n:3030000
Cons ci ratio: 4.178673e-01	ci left: 2.299789e-05	ci right 3.541710e-05	k: 87	n:3030000
KS ci ratio: 6.255340e-02	ci left: 1.253893e-03	ci right 1.335183e-03	k: 3921	n:3030000
SFPQ   3030000 perm   4284 sec   (707 perm/sec)   p_kst 1.294059e-03   p_cons 2.871287e-05   p_joint 4.356436e-05

Joint ci ratio: 3.398996e-01	ci left: 3.633016e-05	ci right 5.149162e-05	k: 132	n:3040000
Cons ci ratio: 4.178673e-01	ci left: 2.292224e-05	ci right 3.530060e-05	k: 87	n:3040000
KS ci ratio: 6.237860e-02	ci left: 1.256893e-03	ci right 1.338141e-03	k: 3943	n:3040000
SFPQ   3040000 perm   4311 sec   (705 perm/sec)   p_kst 1.297039e-03   p_cons 2.861842e-05   p_joint 4.342105e-05

Joint ci ratio: 3.398996e-01	ci left: 3.621104e-05	ci right 5.132280e-05	k: 132	n:3050000
Cons ci ratio: 4.178673e-01	ci left: 2.284709e-05	ci right 3.518486e-05	k: 87	n:3050000
KS ci ratio: 6.229970e-02	ci left: 1.255999e-03	ci right 1.337084e-03	k: 3953	n:3050000
SFPQ   3050000 perm   4337 sec   (703 perm/sec)   p_kst 1.296066e-03   p_cons 2.852459e-05   p_joint 4.327869e-05

Joint ci ratio: 3.398997e-01	ci left: 3.609271e-05	ci right 5.115508e-05	k: 132	n:3060000
Cons ci ratio: 4.178673e-01	ci left: 2.277242e-05	ci right 3.506988e-05	k: 87	n:3060000
KS ci ratio: 6.217400e-02	ci left: 1.257042e-03	ci right 1.338024e-03	k: 3969	n:3060000
SFPQ   3060000 perm   4364 sec   (701 perm/sec)   p_kst 1.297059e-03   p_cons 2.843137e-05   p_joint 4.313725e-05

Joint ci ratio: 3.386290e-01	ci left: 3.627313e-05	ci right 5.134182e-05	k: 133	n:3070000
Cons ci ratio: 4.178673e-01	ci left: 2.269825e-05	ci right 3.495564e-05	k: 87	n:3070000
KS ci ratio: 6.208807e-02	ci left: 1.256475e-03	ci right 1.337304e-03	k: 3980	n:3070000
SFPQ   3070000 perm   4389 sec   (699 perm/sec)   p_kst 1.296417e-03   p_cons 2.833876e-05   p_joint 4.332248e-05

Joint ci ratio: 3.386290e-01	ci left: 3.615536e-05	ci right 5.117513e-05	k: 133	n:3080000
Cons ci ratio: 4.178674e-01	ci left: 2.262455e-05	ci right 3.484215e-05	k: 87	n:3080000
KS ci ratio: 6.198694e-02	ci left: 1.256551e-03	ci right 1.337249e-03	k: 3993	n:3080000
SFPQ   3080000 perm   4416 sec   (698 perm/sec)   p_kst 1.296429e-03   p_cons 2.824675e-05   p_joint 4.318182e-05

Joint ci ratio: 3.386290e-01	ci left: 3.603835e-05	ci right 5.100952e-05	k: 133	n:3090000
Cons ci ratio: 4.178674e-01	ci left: 2.255133e-05	ci right 3.472939e-05	k: 87	n:3090000
KS ci ratio: 6.189404e-02	ci left: 1.256307e-03	ci right 1.336865e-03	k: 4005	n:3090000
SFPQ   3090000 perm   4443 sec   (696 perm/sec)   p_kst 1.296117e-03   p_cons 2.815534e-05   p_joint 4.304207e-05

Joint ci ratio: 3.386290e-01	ci left: 3.592209e-05	ci right 5.084497e-05	k: 133	n:3100000
Cons ci ratio: 4.155131e-01	ci left: 2.276734e-05	ci right 3.497358e-05	k: 88	n:3100000
KS ci ratio: 6.178616e-02	ci left: 1.256701e-03	ci right 1.337138e-03	k: 4019	n:3100000
SFPQ   3100000 perm   4469 sec   (694 perm/sec)   p_kst 1.296452e-03   p_cons 2.838710e-05   p_joint 4.290323e-05

Joint ci ratio: 3.862426e-01	ci left: 2.674246e-05	ci right 3.981370e-05	k: 102	n:3110000
Cons ci ratio: 4.155132e-01	ci left: 2.269413e-05	ci right 3.486113e-05	k: 88	n:3110000
KS ci ratio: 5.912171e-02	ci left: 1.369836e-03	ci right 1.453605e-03	k: 4389	n:3110000
SFPQ   3110000 perm   4496 sec   (692 perm/sec)   p_kst 1.411254e-03   p_cons 2.829582e-05   p_joint 3.279743e-05

Joint ci ratio: 3.843812e-01	ci left: 2.694621e-05	ci right 4.003751e-05	k: 103	n:3120000
Cons ci ratio: 4.131983e-01	ci left: 2.290849e-05	ci right 3.510314e-05	k: 89	n:3120000
KS ci ratio: 5.900084e-02	ci left: 1.371130e-03	ci right 1.454800e-03	k: 4407	n:3120000
SFPQ   3120000 perm   4522 sec   (690 perm/sec)   p_kst 1.412500e-03   p_cons 2.852564e-05   p_joint 3.301282e-05

Joint ci ratio: 3.843812e-01	ci left: 2.686012e-05	ci right 3.990959e-05	k: 103	n:3130000
Cons ci ratio: 4.131983e-01	ci left: 2.283530e-05	ci right 3.499099e-05	k: 89	n:3130000
KS ci ratio: 5.891404e-02	ci left: 1.370841e-03	ci right 1.454367e-03	k: 4420	n:3130000
SFPQ   3130000 perm   4549 sec   (688 perm/sec)   p_kst 1.412141e-03   p_cons 2.843450e-05   p_joint 3.290735e-05

Joint ci ratio: 3.843812e-01	ci left: 2.677458e-05	ci right 3.978249e-05	k: 103	n:3140000
Cons ci ratio: 4.131983e-01	ci left: 2.276258e-05	ci right 3.487955e-05	k: 89	n:3140000
KS ci ratio: 5.880770e-02	ci left: 1.371496e-03	ci right 1.454905e-03	k: 4436	n:3140000
SFPQ   3140000 perm   4576 sec   (686 perm/sec)   p_kst 1.412739e-03   p_cons 2.834395e-05   p_joint 3.280255e-05

Joint ci ratio: 3.825464e-01	ci left: 2.697644e-05	ci right 4.000412e-05	k: 104	n:3150000
Cons ci ratio: 4.131983e-01	ci left: 2.269032e-05	ci right 3.476883e-05	k: 89	n:3150000
KS ci ratio: 5.869534e-02	ci left: 1.372460e-03	ci right 1.455763e-03	k: 4453	n:3150000
SFPQ   3150000 perm   4602 sec   (685 perm/sec)   p_kst 1.413651e-03   p_cons 2.825397e-05   p_joint 3.301587e-05

Joint ci ratio: 3.862427e-01	ci left: 2.631932e-05	ci right 3.918374e-05	k: 102	n:3160000
Cons ci ratio: 4.131983e-01	ci left: 2.261851e-05	ci right 3.465880e-05	k: 89	n:3160000
KS ci ratio: 5.861645e-02	ci left: 1.371858e-03	ci right 1.455009e-03	k: 4465	n:3160000
SFPQ   3160000 perm   4628 sec   (683 perm/sec)   p_kst 1.412975e-03   p_cons 2.816456e-05   p_joint 3.227848e-05

Joint ci ratio: 3.862427e-01	ci left: 2.623629e-05	ci right 3.906013e-05	k: 102	n:3170000
Cons ci ratio: 4.131984e-01	ci left: 2.254716e-05	ci right 3.454946e-05	k: 89	n:3170000
KS ci ratio: 5.853134e-02	ci left: 1.371572e-03	ci right 1.454580e-03	k: 4478	n:3170000
SFPQ   3170000 perm   4656 sec   (681 perm/sec)   p_kst 1.412618e-03   p_cons 2.807571e-05   p_joint 3.217666e-05

Joint ci ratio: 3.825465e-01	ci left: 2.672194e-05	ci right 3.962672e-05	k: 104	n:3180000
Cons ci ratio: 4.109217e-01	ci left: 2.275812e-05	ci right 3.478771e-05	k: 90	n:3180000
KS ci ratio: 5.842705e-02	ci left: 1.372216e-03	ci right 1.455111e-03	k: 4494	n:3180000
SFPQ   3180000 perm   4683 sec   (679 perm/sec)   p_kst 1.413208e-03   p_cons 2.830189e-05   p_joint 3.270440e-05

Joint ci ratio: 3.825465e-01	ci left: 2.663817e-05	ci right 3.950250e-05	k: 104	n:3190000
Cons ci ratio: 4.109217e-01	ci left: 2.268678e-05	ci right 3.467866e-05	k: 90	n:3190000
KS ci ratio: 5.834924e-02	ci left: 1.371622e-03	ci right 1.454366e-03	k: 4506	n:3190000
SFPQ   3190000 perm   4709 sec   (677 perm/sec)   p_kst 1.412539e-03   p_cons 2.821317e-05   p_joint 3.260188e-05

Joint ci ratio: 3.789543e-01	ci left: 2.712011e-05	ci right 4.006359e-05	k: 106	n:3200000
Cons ci ratio: 4.109217e-01	ci left: 2.261588e-05	ci right 3.457029e-05	k: 90	n:3200000
KS ci ratio: 5.821371e-02	ci left: 1.373802e-03	ci right 1.456479e-03	k: 4527	n:3200000
SFPQ   3200000 perm   4736 sec   (676 perm/sec)   p_kst 1.414687e-03   p_cons 2.812500e-05   p_joint 3.312500e-05

Joint ci ratio: 3.789543e-01	ci left: 2.703563e-05	ci right 3.993879e-05	k: 106	n:3210000
Cons ci ratio: 4.109218e-01	ci left: 2.254543e-05	ci right 3.446259e-05	k: 90	n:3210000
KS ci ratio: 5.815599e-02	ci left: 1.372285e-03	ci right 1.454787e-03	k: 4536	n:3210000
SFPQ   3210000 perm   4763 sec   (674 perm/sec)   p_kst 1.413084e-03   p_cons 2.803738e-05   p_joint 3.302181e-05

Joint ci ratio: 3.789543e-01	ci left: 2.695166e-05	ci right 3.981475e-05	k: 106	n:3220000
Cons ci ratio: 4.109218e-01	ci left: 2.247541e-05	ci right 3.435557e-05	k: 90	n:3220000
KS ci ratio: 5.806009e-02	ci left: 1.372614e-03	ci right 1.454995e-03	k: 4551	n:3220000
SFPQ   3220000 perm   4790 sec   (672 perm/sec)   p_kst 1.413354e-03   p_cons 2.795031e-05   p_joint 3.291925e-05

Joint ci ratio: 3.789544e-01	ci left: 2.686822e-05	ci right 3.969149e-05	k: 106	n:3230000
Cons ci ratio: 4.109218e-01	ci left: 2.240582e-05	ci right 3.424920e-05	k: 90	n:3230000
KS ci ratio: 5.792656e-02	ci left: 1.374772e-03	ci right 1.457086e-03	k: 4572	n:3230000
SFPQ   3230000 perm   4817 sec   (671 perm/sec)   p_kst 1.415480e-03   p_cons 2.786378e-05   p_joint 3.281734e-05

Joint ci ratio: 3.789544e-01	ci left: 2.678530e-05	ci right 3.956898e-05	k: 106	n:3240000
Cons ci ratio: 4.109218e-01	ci left: 2.233667e-05	ci right 3.414350e-05	k: 90	n:3240000
KS ci ratio: 5.782547e-02	ci left: 1.375396e-03	ci right 1.457598e-03	k: 4588	n:3240000
SFPQ   3240000 perm   4843 sec   (669 perm/sec)   p_kst 1.416049e-03   p_cons 2.777778e-05   p_joint 3.271605e-05

Joint ci ratio: 3.789544e-01	ci left: 2.670288e-05	ci right 3.944723e-05	k: 106	n:3250000
Cons ci ratio: 4.109218e-01	ci left: 2.226794e-05	ci right 3.403844e-05	k: 90	n:3250000
KS ci ratio: 5.776261e-02	ci left: 1.374196e-03	ci right 1.456235e-03	k: 4598	n:3250000
SFPQ   3250000 perm   4871 sec   (667 perm/sec)   p_kst 1.414769e-03   p_cons 2.769231e-05   p_joint 3.261538e-05

Joint ci ratio: 3.789544e-01	ci left: 2.662097e-05	ci right 3.932623e-05	k: 106	n:3260000
Cons ci ratio: 4.086824e-01	ci left: 2.247476e-05	ci right 3.427223e-05	k: 91	n:3260000
KS ci ratio: 5.771876e-02	ci left: 1.372097e-03	ci right 1.453946e-03	k: 4605	n:3260000
SFPQ   3260000 perm   4898 sec   (666 perm/sec)   p_kst 1.412577e-03   p_cons 2.791411e-05   p_joint 3.251534e-05

Joint ci ratio: 3.789544e-01	ci left: 2.653956e-05	ci right 3.920597e-05	k: 106	n:3270000
Cons ci ratio: 4.086824e-01	ci left: 2.240603e-05	ci right 3.416743e-05	k: 91	n:3270000
KS ci ratio: 5.760628e-02	ci left: 1.373326e-03	ci right 1.455084e-03	k: 4623	n:3270000
SFPQ   3270000 perm   4926 sec   (664 perm/sec)   p_kst 1.413761e-03   p_cons 2.782875e-05   p_joint 3.241590e-05

Joint ci ratio: 3.843815e-01	ci left: 2.563176e-05	ci right 3.808446e-05	k: 103	n:3280000
Cons ci ratio: 4.064792e-01	ci left: 2.261133e-05	ci right 3.439923e-05	k: 92	n:3280000
KS ci ratio: 5.753169e-02	ci left: 1.372745e-03	ci right 1.454359e-03	k: 4635	n:3280000
SFPQ   3280000 perm   4953 sec   (662 perm/sec)   p_kst 1.413110e-03   p_cons 2.804878e-05   p_joint 3.140244e-05

Joint ci ratio: 3.843815e-01	ci left: 2.555385e-05	ci right 3.796870e-05	k: 103	n:3290000
Cons ci ratio: 4.064793e-01	ci left: 2.254261e-05	ci right 3.429467e-05	k: 92	n:3290000
KS ci ratio: 5.742647e-02	ci left: 1.373666e-03	ci right 1.455180e-03	k: 4652	n:3290000
SFPQ   3290000 perm   4981 sec   (661 perm/sec)   p_kst 1.413982e-03   p_cons 2.796353e-05   p_joint 3.130699e-05

Joint ci ratio: 3.959739e-01	ci left: 2.383657e-05	ci right 3.585800e-05	k: 97	n:3300000
Cons ci ratio: 4.043113e-01	ci left: 2.274642e-05	ci right 3.452452e-05	k: 93	n:3300000
KS ci ratio: 5.730340e-02	ci left: 1.375477e-03	ci right 1.456917e-03	k: 4672	n:3300000
SFPQ   3300000 perm   5008 sec   (659 perm/sec)   p_kst 1.415758e-03   p_cons 2.818182e-05   p_joint 2.939394e-05

Joint ci ratio: 3.959739e-01	ci left: 2.376455e-05	ci right 3.574967e-05	k: 97	n:3310000
Cons ci ratio: 4.021777e-01	ci left: 2.294917e-05	ci right 3.475282e-05	k: 94	n:3310000
KS ci ratio: 5.725447e-02	ci left: 1.373703e-03	ci right 1.454967e-03	k: 4680	n:3310000
SFPQ   3310000 perm   5036 sec   (657 perm/sec)   p_kst 1.413897e-03   p_cons 2.839879e-05   p_joint 2.930514e-05

Joint ci ratio: 3.959739e-01	ci left: 2.369297e-05	ci right 3.564199e-05	k: 97	n:3320000
Cons ci ratio: 4.021777e-01	ci left: 2.288005e-05	ci right 3.464814e-05	k: 94	n:3320000
KS ci ratio: 5.714467e-02	ci left: 1.374910e-03	ci right 1.456084e-03	k: 4698	n:3320000
SFPQ   3320000 perm   5063 sec   (656 perm/sec)   p_kst 1.415060e-03   p_cons 2.831325e-05   p_joint 2.921687e-05

Joint ci ratio: 3.959739e-01	ci left: 2.362182e-05	ci right 3.553495e-05	k: 97	n:3330000
Cons ci ratio: 4.021777e-01	ci left: 2.281134e-05	ci right 3.454409e-05	k: 94	n:3330000
KS ci ratio: 5.706580e-02	ci left: 1.374629e-03	ci right 1.455671e-03	k: 4711	n:3330000
SFPQ   3330000 perm   5091 sec   (654 perm/sec)   p_kst 1.414715e-03   p_cons 2.822823e-05   p_joint 2.912913e-05

Joint ci ratio: 3.959739e-01	ci left: 2.355110e-05	ci right 3.542856e-05	k: 97	n:3340000
Cons ci ratio: 4.000775e-01	ci left: 2.301224e-05	ci right 3.477012e-05	k: 95	n:3340000
KS ci ratio: 5.701747e-02	ci left: 1.372875e-03	ci right 1.453742e-03	k: 4719	n:3340000
SFPQ   3340000 perm   5119 sec   (653 perm/sec)   p_kst 1.412874e-03   p_cons 2.844311e-05   p_joint 2.904192e-05

Joint ci ratio: 3.939689e-01	ci left: 2.374965e-05	ci right 3.565081e-05	k: 98	n:3350000
Cons ci ratio: 3.980099e-01	ci left: 2.321209e-05	ci right 3.499464e-05	k: 96	n:3350000
KS ci ratio: 5.693912e-02	ci left: 1.372602e-03	ci right 1.453339e-03	k: 4732	n:3350000
SFPQ   3350000 perm   5146 sec   (651 perm/sec)   p_kst 1.412537e-03   p_cons 2.865672e-05   p_joint 2.925373e-05

Joint ci ratio: 3.939690e-01	ci left: 2.367897e-05	ci right 3.554471e-05	k: 98	n:3360000
Cons ci ratio: 3.959740e-01	ci left: 2.341091e-05	ci right 3.521768e-05	k: 97	n:3360000
KS ci ratio: 5.689712e-02	ci left: 1.370570e-03	ci right 1.451126e-03	k: 4739	n:3360000
SFPQ   3360000 perm   5174 sec   (649 perm/sec)   p_kst 1.410417e-03   p_cons 2.886905e-05   p_joint 2.916667e-05

Joint ci ratio: 3.939690e-01	ci left: 2.360871e-05	ci right 3.543924e-05	k: 98	n:3370000
Cons ci ratio: 3.959740e-01	ci left: 2.334144e-05	ci right 3.511317e-05	k: 97	n:3370000
KS ci ratio: 5.683124e-02	ci left: 1.369721e-03	ci right 1.450131e-03	k: 4750	n:3370000
SFPQ   3370000 perm   5202 sec   (648 perm/sec)   p_kst 1.409496e-03   p_cons 2.878338e-05   p_joint 2.908012e-05

Joint ci ratio: 3.939690e-01	ci left: 2.353886e-05	ci right 3.533439e-05	k: 98	n:3380000
Cons ci ratio: 3.959740e-01	ci left: 2.327239e-05	ci right 3.500929e-05	k: 97	n:3380000
KS ci ratio: 5.674769e-02	ci left: 1.369752e-03	ci right 1.450041e-03	k: 4764	n:3380000
SFPQ   3380000 perm   5230 sec   (646 perm/sec)   p_kst 1.409467e-03   p_cons 2.869822e-05   p_joint 2.899408e-05

Joint ci ratio: 3.939690e-01	ci left: 2.346942e-05	ci right 3.523016e-05	k: 98	n:3390000
Cons ci ratio: 3.959740e-01	ci left: 2.320374e-05	ci right 3.490602e-05	k: 97	n:3390000
KS ci ratio: 5.667639e-02	ci left: 1.369201e-03	ci right 1.449354e-03	k: 4776	n:3390000
SFPQ   3390000 perm   5258 sec   (645 perm/sec)   p_kst 1.408850e-03   p_cons 2.861357e-05   p_joint 2.890855e-05

Joint ci ratio: 3.939690e-01	ci left: 2.340039e-05	ci right 3.512654e-05	k: 98	n:3400000
Cons ci ratio: 3.959740e-01	ci left: 2.313549e-05	ci right 3.480335e-05	k: 97	n:3400000
KS ci ratio: 5.658170e-02	ci left: 1.369813e-03	ci right 1.449864e-03	k: 4792	n:3400000
SFPQ   3400000 perm   5287 sec   (643 perm/sec)   p_kst 1.409412e-03   p_cons 2.852941e-05   p_joint 2.882353e-05

Joint ci ratio: 3.939690e-01	ci left: 2.333177e-05	ci right 3.502353e-05	k: 98	n:3410000
Cons ci ratio: 3.959740e-01	ci left: 2.306764e-05	ci right 3.470129e-05	k: 97	n:3410000
KS ci ratio: 5.651691e-02	ci left: 1.368976e-03	ci right 1.448883e-03	k: 4803	n:3410000
SFPQ   3410000 perm   5316 sec   (641 perm/sec)   p_kst 1.408504e-03   p_cons 2.844575e-05   p_joint 2.873900e-05

Joint ci ratio: 3.939691e-01	ci left: 2.326355e-05	ci right 3.492112e-05	k: 98	n:3420000
Cons ci ratio: 3.959741e-01	ci left: 2.300019e-05	ci right 3.459983e-05	k: 97	n:3420000
KS ci ratio: 5.642301e-02	ci left: 1.369586e-03	ci right 1.449391e-03	k: 4819	n:3420000
SFPQ   3420000 perm   5345 sec   (640 perm/sec)   p_kst 1.409064e-03   p_cons 2.836257e-05   p_joint 2.865497e-05

Joint ci ratio: 3.919942e-01	ci left: 2.345846e-05	ci right 3.513952e-05	k: 99	n:3430000
Cons ci ratio: 3.959741e-01	ci left: 2.293314e-05	ci right 3.449895e-05	k: 97	n:3430000
KS ci ratio: 5.630044e-02	ci left: 1.371629e-03	ci right 1.451374e-03	k: 4840	n:3430000
SFPQ   3430000 perm   5375 sec   (638 perm/sec)   p_kst 1.411079e-03   p_cons 2.827988e-05   p_joint 2.886297e-05

Joint ci ratio: 3.919942e-01	ci left: 2.339027e-05	ci right 3.503738e-05	k: 99	n:3440000
Cons ci ratio: 3.959741e-01	ci left: 2.286647e-05	ci right 3.439866e-05	k: 97	n:3440000
KS ci ratio: 5.620761e-02	ci left: 1.372227e-03	ci right 1.451872e-03	k: 4856	n:3440000
SFPQ   3440000 perm   5404 sec   (637 perm/sec)   p_kst 1.411628e-03   p_cons 2.819767e-05   p_joint 2.877907e-05

Joint ci ratio: 3.919943e-01	ci left: 2.332247e-05	ci right 3.493582e-05	k: 99	n:3450000
Cons ci ratio: 3.939691e-01	ci left: 2.306126e-05	ci right 3.461746e-05	k: 98	n:3450000
KS ci ratio: 5.608644e-02	ci left: 1.374251e-03	ci right 1.453836e-03	k: 4877	n:3450000
SFPQ   3450000 perm   5434 sec   (635 perm/sec)   p_kst 1.413623e-03   p_cons 2.840580e-05   p_joint 2.869565e-05

Joint ci ratio: 3.919943e-01	ci left: 2.325506e-05	ci right 3.483485e-05	k: 99	n:3460000
Cons ci ratio: 3.919943e-01	ci left: 2.325506e-05	ci right 3.483485e-05	k: 99	n:3460000
KS ci ratio: 5.596604e-02	ci left: 1.376264e-03	ci right 1.455788e-03	k: 4898	n:3460000
SFPQ   3460000 perm   5464 sec   (633 perm/sec)   p_kst 1.415607e-03   p_cons 2.861272e-05   p_joint 2.861272e-05

Joint ci ratio: 3.919943e-01	ci left: 2.318805e-05	ci right 3.473446e-05	k: 99	n:3470000
Cons ci ratio: 3.919943e-01	ci left: 2.318805e-05	ci right 3.473446e-05	k: 99	n:3470000
KS ci ratio: 5.588625e-02	ci left: 1.376276e-03	ci right 1.455684e-03	k: 4912	n:3470000
SFPQ   3470000 perm   5494 sec   (632 perm/sec)   p_kst 1.415562e-03   p_cons 2.853026e-05   p_joint 2.853026e-05

Joint ci ratio: 3.919943e-01	ci left: 2.312141e-05	ci right 3.463465e-05	k: 99	n:3480000
Cons ci ratio: 3.900489e-01	ci left: 2.338052e-05	ci right 3.495012e-05	k: 100	n:3480000
KS ci ratio: 5.577280e-02	ci left: 1.377988e-03	ci right 1.457328e-03	k: 4932	n:3480000
SFPQ   3480000 perm   5524 sec   (630 perm/sec)   p_kst 1.417241e-03   p_cons 2.873563e-05   p_joint 2.844828e-05

Joint ci ratio: 3.919943e-01	ci left: 2.305516e-05	ci right 3.453541e-05	k: 99	n:3490000
Cons ci ratio: 3.881321e-01	ci left: 2.357203e-05	ci right 3.516441e-05	k: 101	n:3490000
KS ci ratio: 5.569946e-02	ci left: 1.377713e-03	ci right 1.456929e-03	k: 4945	n:3490000
SFPQ   3490000 perm   5555 sec   (628 perm/sec)   p_kst 1.416905e-03   p_cons 2.893983e-05   p_joint 2.836676e-05

Joint ci ratio: 3.900489e-01	ci left: 2.324691e-05	ci right 3.475041e-05	k: 100	n:3500000
Cons ci ratio: 3.881321e-01	ci left: 2.350468e-05	ci right 3.506394e-05	k: 101	n:3500000
KS ci ratio: 5.564889e-02	ci left: 1.376312e-03	ci right 1.455374e-03	k: 4954	n:3500000
SFPQ   3500000 perm   5585 sec   (627 perm/sec)   p_kst 1.415429e-03   p_cons 2.885714e-05   p_joint 2.857143e-05

Joint ci ratio: 3.900489e-01	ci left: 2.318068e-05	ci right 3.465140e-05	k: 100	n:3510000
Cons ci ratio: 3.881321e-01	ci left: 2.343771e-05	ci right 3.496404e-05	k: 101	n:3510000
KS ci ratio: 5.554247e-02	ci left: 1.377729e-03	ci right 1.456716e-03	k: 4973	n:3510000
SFPQ   3510000 perm   5616 sec   (625 perm/sec)   p_kst 1.416809e-03   p_cons 2.877493e-05   p_joint 2.849003e-05

Joint ci ratio: 3.900489e-01	ci left: 2.311483e-05	ci right 3.455296e-05	k: 100	n:3520000
Cons ci ratio: 3.881322e-01	ci left: 2.337113e-05	ci right 3.486471e-05	k: 101	n:3520000
KS ci ratio: 5.547561e-02	ci left: 1.377176e-03	ci right 1.456034e-03	k: 4985	n:3520000
SFPQ   3520000 perm   5646 sec   (623 perm/sec)   p_kst 1.416193e-03   p_cons 2.869318e-05   p_joint 2.840909e-05

Joint ci ratio: 3.900489e-01	ci left: 2.304935e-05	ci right 3.445508e-05	k: 100	n:3530000
Cons ci ratio: 3.881322e-01	ci left: 2.330492e-05	ci right 3.476594e-05	k: 101	n:3530000
KS ci ratio: 5.537571e-02	ci left: 1.378304e-03	ci right 1.457079e-03	k: 5003	n:3530000
SFPQ   3530000 perm   5676 sec   (622 perm/sec)   p_kst 1.417280e-03   p_cons 2.861190e-05   p_joint 2.832861e-05

Joint ci ratio: 3.900490e-01	ci left: 2.298424e-05	ci right 3.435775e-05	k: 100	n:3540000
Cons ci ratio: 3.881322e-01	ci left: 2.323909e-05	ci right 3.466773e-05	k: 101	n:3540000
KS ci ratio: 5.529289e-02	ci left: 1.378589e-03	ci right 1.457259e-03	k: 5018	n:3540000
SFPQ   3540000 perm   5707 sec   (620 perm/sec)   p_kst 1.417514e-03   p_cons 2.853107e-05   p_joint 2.824859e-05

Joint ci ratio: 3.900490e-01	ci left: 2.291949e-05	ci right 3.426096e-05	k: 100	n:3550000
Cons ci ratio: 3.881322e-01	ci left: 2.317362e-05	ci right 3.457008e-05	k: 101	n:3550000
KS ci ratio: 5.516657e-02	ci left: 1.381095e-03	ci right 1.459722e-03	k: 5041	n:3550000
SFPQ   3550000 perm   5737 sec   (619 perm/sec)   p_kst 1.420000e-03   p_cons 2.845070e-05   p_joint 2.816901e-05

Joint ci ratio: 3.900490e-01	ci left: 2.285511e-05	ci right 3.416473e-05	k: 100	n:3560000
Cons ci ratio: 3.881322e-01	ci left: 2.310853e-05	ci right 3.447297e-05	k: 101	n:3560000
KS ci ratio: 5.507923e-02	ci left: 1.381648e-03	ci right 1.460178e-03	k: 5057	n:3560000
SFPQ   3560000 perm   5767 sec   (617 perm/sec)   p_kst 1.420506e-03   p_cons 2.837079e-05   p_joint 2.808989e-05

Joint ci ratio: 3.862435e-01	ci left: 2.329664e-05	ci right 3.468366e-05	k: 102	n:3570000
Cons ci ratio: 3.862435e-01	ci left: 2.329664e-05	ci right 3.468366e-05	k: 102	n:3570000
KS ci ratio: 5.498688e-02	ci left: 1.382474e-03	ci right 1.460915e-03	k: 5074	n:3570000
SFPQ   3570000 perm   5797 sec   (616 perm/sec)   p_kst 1.421289e-03   p_cons 2.857143e-05   p_joint 2.857143e-05

Joint ci ratio: 3.843820e-01	ci left: 2.348384e-05	ci right 3.489304e-05	k: 103	n:3580000
Cons ci ratio: 3.862435e-01	ci left: 2.323157e-05	ci right 3.458678e-05	k: 102	n:3580000
KS ci ratio: 5.489499e-02	ci left: 1.383296e-03	ci right 1.461648e-03	k: 5091	n:3580000
SFPQ   3580000 perm   5828 sec   (614 perm/sec)   p_kst 1.422067e-03   p_cons 2.849162e-05   p_joint 2.877095e-05

Joint ci ratio: 3.843820e-01	ci left: 2.341843e-05	ci right 3.479584e-05	k: 103	n:3590000
Cons ci ratio: 3.862435e-01	ci left: 2.316686e-05	ci right 3.449044e-05	k: 102	n:3590000
KS ci ratio: 5.480894e-02	ci left: 1.383838e-03	ci right 1.462095e-03	k: 5107	n:3590000
SFPQ   3590000 perm   5859 sec   (613 perm/sec)   p_kst 1.422563e-03   p_cons 2.841226e-05   p_joint 2.869081e-05

Joint ci ratio: 3.843820e-01	ci left: 2.335337e-05	ci right 3.469919e-05	k: 103	n:3600000
Cons ci ratio: 3.862435e-01	ci left: 2.310250e-05	ci right 3.439463e-05	k: 102	n:3600000
KS ci ratio: 5.474469e-02	ci left: 1.383282e-03	ci right 1.461412e-03	k: 5119	n:3600000
SFPQ   3600000 perm   5889 sec   (611 perm/sec)   p_kst 1.421944e-03   p_cons 2.833333e-05   p_joint 2.861111e-05

Joint ci ratio: 3.843820e-01	ci left: 2.328868e-05	ci right 3.460307e-05	k: 103	n:3610000
Cons ci ratio: 3.862435e-01	ci left: 2.303851e-05	ci right 3.429935e-05	k: 102	n:3610000
KS ci ratio: 5.466466e-02	ci left: 1.383549e-03	ci right 1.461576e-03	k: 5134	n:3610000
SFPQ   3610000 perm   5920 sec   (610 perm/sec)   p_kst 1.422161e-03   p_cons 2.825485e-05   p_joint 2.853186e-05

Joint ci ratio: 3.843821e-01	ci left: 2.322435e-05	ci right 3.450748e-05	k: 103	n:3620000
Cons ci ratio: 3.862435e-01	ci left: 2.297487e-05	ci right 3.420460e-05	k: 102	n:3620000
KS ci ratio: 5.461686e-02	ci left: 1.382179e-03	ci right 1.460059e-03	k: 5143	n:3620000
SFPQ   3620000 perm   5949 sec   (608 perm/sec)   p_kst 1.420718e-03   p_cons 2.817680e-05   p_joint 2.845304e-05

Joint ci ratio: 3.843821e-01	ci left: 2.316037e-05	ci right 3.441242e-05	k: 103	n:3630000
Cons ci ratio: 3.843821e-01	ci left: 2.316037e-05	ci right 3.441242e-05	k: 103	n:3630000
KS ci ratio: 5.454799e-02	ci left: 1.381903e-03	ci right 1.459667e-03	k: 5156	n:3630000
SFPQ   3630000 perm   5980 sec   (607 perm/sec)   p_kst 1.420386e-03   p_cons 2.837466e-05   p_joint 2.837466e-05

Joint ci ratio: 3.843821e-01	ci left: 2.309674e-05	ci right 3.431788e-05	k: 103	n:3640000
Cons ci ratio: 3.843821e-01	ci left: 2.309674e-05	ci right 3.431788e-05	k: 103	n:3640000
KS ci ratio: 5.443721e-02	ci left: 1.383798e-03	ci right 1.461504e-03	k: 5177	n:3640000
SFPQ   3640000 perm   6009 sec   (606 perm/sec)   p_kst 1.422253e-03   p_cons 2.829670e-05   p_joint 2.829670e-05

Joint ci ratio: 3.825473e-01	ci left: 2.328103e-05	ci right 3.452412e-05	k: 104	n:3650000
Cons ci ratio: 3.843821e-01	ci left: 2.303346e-05	ci right 3.422386e-05	k: 103	n:3650000
KS ci ratio: 5.440576e-02	ci left: 1.381628e-03	ci right 1.459167e-03	k: 5183	n:3650000
SFPQ   3650000 perm   6041 sec   (604 perm/sec)   p_kst 1.420000e-03   p_cons 2.821918e-05   p_joint 2.849315e-05

Joint ci ratio: 3.807385e-01	ci left: 2.346443e-05	ci right 3.472910e-05	k: 105	n:3660000
Cons ci ratio: 3.825473e-01	ci left: 2.321742e-05	ci right 3.442979e-05	k: 104	n:3660000
KS ci ratio: 5.434815e-02	ci left: 1.380818e-03	ci right 1.458226e-03	k: 5194	n:3660000
SFPQ   3660000 perm   6073 sec   (603 perm/sec)   p_kst 1.419126e-03   p_cons 2.841530e-05   p_joint 2.868852e-05

Joint ci ratio: 3.807385e-01	ci left: 2.340049e-05	ci right 3.463447e-05	k: 105	n:3670000
Cons ci ratio: 3.825473e-01	ci left: 2.315415e-05	ci right 3.433598e-05	k: 104	n:3670000
KS ci ratio: 5.426985e-02	ci left: 1.381087e-03	ci right 1.458395e-03	k: 5209	n:3670000
SFPQ   3670000 perm   6105 sec   (601 perm/sec)   p_kst 1.419346e-03   p_cons 2.833787e-05   p_joint 2.861035e-05

Joint ci ratio: 3.807385e-01	ci left: 2.333690e-05	ci right 3.454036e-05	k: 105	n:3680000
Cons ci ratio: 3.825473e-01	ci left: 2.309123e-05	ci right 3.424267e-05	k: 104	n:3680000
KS ci ratio: 5.416595e-02	ci left: 1.382695e-03	ci right 1.459941e-03	k: 5229	n:3680000
SFPQ   3680000 perm   6137 sec   (600 perm/sec)   p_kst 1.420924e-03   p_cons 2.826087e-05   p_joint 2.853261e-05

Joint ci ratio: 3.789552e-01	ci left: 2.351879e-05	ci right 3.474351e-05	k: 106	n:3690000
Cons ci ratio: 3.807385e-01	ci left: 2.327366e-05	ci right 3.444675e-05	k: 105	n:3690000
KS ci ratio: 5.409876e-02	ci left: 1.382423e-03	ci right 1.459555e-03	k: 5242	n:3690000
SFPQ   3690000 perm   6169 sec   (598 perm/sec)   p_kst 1.420596e-03   p_cons 2.845528e-05   p_joint 2.872629e-05

Joint ci ratio: 3.789552e-01	ci left: 2.345522e-05	ci right 3.464961e-05	k: 106	n:3700000
Cons ci ratio: 3.807386e-01	ci left: 2.321076e-05	ci right 3.435365e-05	k: 105	n:3700000
KS ci ratio: 5.403697e-02	ci left: 1.381886e-03	ci right 1.458897e-03	k: 5254	n:3700000
SFPQ   3700000 perm   6202 sec   (597 perm/sec)   p_kst 1.420000e-03   p_cons 2.837838e-05   p_joint 2.864865e-05

Joint ci ratio: 3.789552e-01	ci left: 2.339200e-05	ci right 3.455622e-05	k: 106	n:3710000
Cons ci ratio: 3.807386e-01	ci left: 2.314820e-05	ci right 3.426106e-05	k: 105	n:3710000
KS ci ratio: 5.398053e-02	ci left: 1.381086e-03	ci right 1.457970e-03	k: 5265	n:3710000
SFPQ   3710000 perm   6233 sec   (595 perm/sec)   p_kst 1.419137e-03   p_cons 2.830189e-05   p_joint 2.857143e-05

Joint ci ratio: 3.789552e-01	ci left: 2.332912e-05	ci right 3.446332e-05	k: 106	n:3720000
Cons ci ratio: 3.807386e-01	ci left: 2.308597e-05	ci right 3.416896e-05	k: 105	n:3720000
KS ci ratio: 5.391915e-02	ci left: 1.380556e-03	ci right 1.457320e-03	k: 5277	n:3720000
SFPQ   3720000 perm   6265 sec   (594 perm/sec)   p_kst 1.418548e-03   p_cons 2.822581e-05   p_joint 2.849462e-05

Joint ci ratio: 3.789552e-01	ci left: 2.326658e-05	ci right 3.437093e-05	k: 106	n:3730000
Cons ci ratio: 3.807386e-01	ci left: 2.302408e-05	ci right 3.407735e-05	k: 105	n:3730000
KS ci ratio: 5.384778e-02	ci left: 1.380558e-03	ci right 1.457217e-03	k: 5291	n:3730000
SFPQ   3730000 perm   6297 sec   (592 perm/sec)   p_kst 1.418499e-03   p_cons 2.815013e-05   p_joint 2.841823e-05

Joint ci ratio: 3.789552e-01	ci left: 2.320437e-05	ci right 3.427903e-05	k: 106	n:3740000
Cons ci ratio: 3.807386e-01	ci left: 2.296251e-05	ci right 3.398624e-05	k: 105	n:3740000
KS ci ratio: 5.377669e-02	ci left: 1.380559e-03	ci right 1.457114e-03	k: 5305	n:3740000
SFPQ   3740000 perm   6329 sec   (591 perm/sec)   p_kst 1.418449e-03   p_cons 2.807487e-05   p_joint 2.834225e-05

Joint ci ratio: 3.789552e-01	ci left: 2.314249e-05	ci right 3.418762e-05	k: 106	n:3750000
Cons ci ratio: 3.789552e-01	ci left: 2.314249e-05	ci right 3.418762e-05	k: 106	n:3750000
KS ci ratio: 5.373118e-02	ci left: 1.379246e-03	ci right 1.455661e-03	k: 5314	n:3750000
SFPQ   3750000 perm   6361 sec   (590 perm/sec)   p_kst 1.417067e-03   p_cons 2.826667e-05   p_joint 2.826667e-05

Joint ci ratio: 3.771967e-01	ci left: 2.332162e-05	ci right 3.438781e-05	k: 107	n:3760000
Cons ci ratio: 3.771967e-01	ci left: 2.332162e-05	ci right 3.438781e-05	k: 107	n:3760000
KS ci ratio: 5.363033e-02	ci left: 1.380825e-03	ci right 1.457180e-03	k: 5334	n:3760000
SFPQ   3760000 perm   6393 sec   (588 perm/sec)   p_kst 1.418617e-03   p_cons 2.845745e-05   p_joint 2.845745e-05

Joint ci ratio: 3.771967e-01	ci left: 2.325976e-05	ci right 3.429660e-05	k: 107	n:3770000
Cons ci ratio: 3.771967e-01	ci left: 2.325976e-05	ci right 3.429660e-05	k: 107	n:3770000
KS ci ratio: 5.357515e-02	ci left: 1.380041e-03	ci right 1.456272e-03	k: 5345	n:3770000
SFPQ   3770000 perm   6424 sec   (587 perm/sec)   p_kst 1.417772e-03   p_cons 2.838196e-05   p_joint 2.838196e-05

Joint ci ratio: 3.754624e-01	ci left: 2.343775e-05	ci right 3.449532e-05	k: 108	n:3780000
Cons ci ratio: 3.771967e-01	ci left: 2.319823e-05	ci right 3.420586e-05	k: 107	n:3780000
KS ci ratio: 5.350014e-02	ci left: 1.380305e-03	ci right 1.456441e-03	k: 5360	n:3780000
SFPQ   3780000 perm   6459 sec   (585 perm/sec)   p_kst 1.417989e-03   p_cons 2.830688e-05   p_joint 2.857143e-05

Joint ci ratio: 3.754625e-01	ci left: 2.337591e-05	ci right 3.440431e-05	k: 108	n:3790000
Cons ci ratio: 3.771968e-01	ci left: 2.313702e-05	ci right 3.411561e-05	k: 107	n:3790000
KS ci ratio: 5.341550e-02	ci left: 1.381089e-03	ci right 1.457143e-03	k: 5377	n:3790000
SFPQ   3790000 perm   6491 sec   (584 perm/sec)   p_kst 1.418734e-03   p_cons 2.823219e-05   p_joint 2.849604e-05

Joint ci ratio: 3.754625e-01	ci left: 2.331440e-05	ci right 3.431377e-05	k: 108	n:3800000
Cons ci ratio: 3.754625e-01	ci left: 2.331440e-05	ci right 3.431377e-05	k: 108	n:3800000
KS ci ratio: 5.334115e-02	ci left: 1.381349e-03	ci right 1.457309e-03	k: 5392	n:3800000
SFPQ   3800000 perm   6524 sec   (582 perm/sec)   p_kst 1.418947e-03   p_cons 2.842105e-05   p_joint 2.842105e-05

Joint ci ratio: 3.737519e-01	ci left: 2.349096e-05	ci right 3.451078e-05	k: 109	n:3810000
Cons ci ratio: 3.754625e-01	ci left: 2.325320e-05	ci right 3.422371e-05	k: 108	n:3810000
KS ci ratio: 5.326712e-02	ci left: 1.381608e-03	ci right 1.457473e-03	k: 5407	n:3810000
SFPQ   3810000 perm   6558 sec   (581 perm/sec)   p_kst 1.419160e-03   p_cons 2.834646e-05   p_joint 2.860892e-05

Joint ci ratio: 3.737519e-01	ci left: 2.342947e-05	ci right 3.442043e-05	k: 109	n:3820000
Cons ci ratio: 3.754625e-01	ci left: 2.319233e-05	ci right 3.413412e-05	k: 108	n:3820000
KS ci ratio: 5.321305e-02	ci left: 1.380833e-03	ci right 1.456576e-03	k: 5418	n:3820000
SFPQ   3820000 perm   6589 sec   (580 perm/sec)   p_kst 1.418325e-03   p_cons 2.827225e-05   p_joint 2.853403e-05

Joint ci ratio: 3.737519e-01	ci left: 2.336829e-05	ci right 3.433056e-05	k: 109	n:3830000
Cons ci ratio: 3.737519e-01	ci left: 2.336829e-05	ci right 3.433056e-05	k: 109	n:3830000
KS ci ratio: 5.313466e-02	ci left: 1.381349e-03	ci right 1.457006e-03	k: 5434	n:3830000
SFPQ   3830000 perm   6622 sec   (578 perm/sec)   p_kst 1.418799e-03   p_cons 2.845953e-05   p_joint 2.845953e-05

Joint ci ratio: 3.720645e-01	ci left: 2.354345e-05	ci right 3.452587e-05	k: 110	n:3840000
Cons ci ratio: 3.737519e-01	ci left: 2.330744e-05	ci right 3.424116e-05	k: 109	n:3840000
KS ci ratio: 5.308099e-02	ci left: 1.380579e-03	ci right 1.456114e-03	k: 5445	n:3840000
SFPQ   3840000 perm   6655 sec   (577 perm/sec)   p_kst 1.417969e-03   p_cons 2.838542e-05   p_joint 2.864583e-05

Joint ci ratio: 3.720645e-01	ci left: 2.348230e-05	ci right 3.443620e-05	k: 110	n:3850000
Cons ci ratio: 3.737519e-01	ci left: 2.324690e-05	ci right 3.415222e-05	k: 109	n:3850000
KS ci ratio: 5.301776e-02	ci left: 1.380325e-03	ci right 1.455753e-03	k: 5458	n:3850000
SFPQ   3850000 perm   6688 sec   (576 perm/sec)   p_kst 1.417662e-03   p_cons 2.831169e-05   p_joint 2.857143e-05

Joint ci ratio: 3.720645e-01	ci left: 2.342146e-05	ci right 3.434698e-05	k: 110	n:3860000
Cons ci ratio: 3.737520e-01	ci left: 2.318667e-05	ci right 3.406375e-05	k: 109	n:3860000
KS ci ratio: 5.294022e-02	ci left: 1.380839e-03	ci right 1.456182e-03	k: 5474	n:3860000
SFPQ   3860000 perm   6722 sec   (574 perm/sec)   p_kst 1.418135e-03   p_cons 2.823834e-05   p_joint 2.849741e-05

Joint ci ratio: 3.720646e-01	ci left: 2.336094e-05	ci right 3.425823e-05	k: 110	n:3870000
Cons ci ratio: 3.737520e-01	ci left: 2.312676e-05	ci right 3.397573e-05	k: 109	n:3870000
KS ci ratio: 5.285820e-02	ci left: 1.381605e-03	ci right 1.456870e-03	k: 5491	n:3870000
SFPQ   3870000 perm   6756 sec   (573 perm/sec)   p_kst 1.418863e-03   p_cons 2.816537e-05   p_joint 2.842377e-05

Joint ci ratio: 3.720646e-01	ci left: 2.330073e-05	ci right 3.416994e-05	k: 110	n:3880000
Cons ci ratio: 3.703998e-01	ci left: 2.353442e-05	ci right 3.445161e-05	k: 111	n:3880000
KS ci ratio: 5.276218e-02	ci left: 1.383131e-03	ci right 1.458338e-03	k: 5511	n:3880000
SFPQ   3880000 perm   6789 sec   (572 perm/sec)   p_kst 1.420361e-03   p_cons 2.860825e-05   p_joint 2.835052e-05

Joint ci ratio: 3.720646e-01	ci left: 2.324083e-05	ci right 3.408210e-05	k: 110	n:3890000
Cons ci ratio: 3.703998e-01	ci left: 2.347392e-05	ci right 3.436304e-05	k: 111	n:3890000
KS ci ratio: 5.267144e-02	ci left: 1.384395e-03	ci right 1.459538e-03	k: 5530	n:3890000
SFPQ   3890000 perm   6823 sec   (570 perm/sec)   p_kst 1.421594e-03   p_cons 2.853470e-05   p_joint 2.827763e-05

Joint ci ratio: 3.720646e-01	ci left: 2.318124e-05	ci right 3.399471e-05	k: 110	n:3900000
Cons ci ratio: 3.703998e-01	ci left: 2.341373e-05	ci right 3.427493e-05	k: 111	n:3900000
KS ci ratio: 5.258592e-02	ci left: 1.385400e-03	ci right 1.460471e-03	k: 5548	n:3900000
SFPQ   3900000 perm   6858 sec   (569 perm/sec)   p_kst 1.422564e-03   p_cons 2.846154e-05   p_joint 2.820513e-05

Joint ci ratio: 3.720646e-01	ci left: 2.312195e-05	ci right 3.390777e-05	k: 110	n:3910000
Cons ci ratio: 3.703998e-01	ci left: 2.335385e-05	ci right 3.418727e-05	k: 111	n:3910000
KS ci ratio: 5.250553e-02	ci left: 1.386148e-03	ci right 1.461141e-03	k: 5565	n:3910000
SFPQ   3910000 perm   6891 sec   (567 perm/sec)   p_kst 1.423274e-03   p_cons 2.838875e-05   p_joint 2.813299e-05

Joint ci ratio: 3.720646e-01	ci left: 2.306297e-05	ci right 3.382127e-05	k: 110	n:3920000
Cons ci ratio: 3.703998e-01	ci left: 2.329427e-05	ci right 3.410006e-05	k: 111	n:3920000
KS ci ratio: 5.244433e-02	ci left: 1.385885e-03	ci right 1.460773e-03	k: 5578	n:3920000
SFPQ   3920000 perm   6925 sec   (566 perm/sec)   p_kst 1.422959e-03   p_cons 2.831633e-05   p_joint 2.806122e-05

Joint ci ratio: 3.720646e-01	ci left: 2.300428e-05	ci right 3.373521e-05	k: 110	n:3930000
Cons ci ratio: 3.703999e-01	ci left: 2.323500e-05	ci right 3.401329e-05	k: 111	n:3930000
KS ci ratio: 5.237397e-02	ci left: 1.386125e-03	ci right 1.460923e-03	k: 5593	n:3930000
SFPQ   3930000 perm   6959 sec   (565 perm/sec)   p_kst 1.423155e-03   p_cons 2.824427e-05   p_joint 2.798982e-05

Joint ci ratio: 3.720646e-01	ci left: 2.294590e-05	ci right 3.364959e-05	k: 110	n:3940000
Cons ci ratio: 3.703999e-01	ci left: 2.317603e-05	ci right 3.392697e-05	k: 111	n:3940000
KS ci ratio: 5.231790e-02	ci left: 1.385613e-03	ci right 1.460301e-03	k: 5605	n:3940000
SFPQ   3940000 perm   6993 sec   (563 perm/sec)   p_kst 1.422589e-03   p_cons 2.817259e-05   p_joint 2.791878e-05

Joint ci ratio: 3.720647e-01	ci left: 2.288781e-05	ci right 3.356440e-05	k: 110	n:3950000
Cons ci ratio: 3.703999e-01	ci left: 2.311735e-05	ci right 3.384108e-05	k: 111	n:3950000
KS ci ratio: 5.228065e-02	ci left: 1.384104e-03	ci right 1.458656e-03	k: 5613	n:3950000
SFPQ   3950000 perm   7028 sec   (562 perm/sec)   p_kst 1.421013e-03   p_cons 2.810127e-05   p_joint 2.784810e-05

Joint ci ratio: 3.720647e-01	ci left: 2.283001e-05	ci right 3.347964e-05	k: 110	n:3960000
Cons ci ratio: 3.671363e-01	ci left: 2.351723e-05	ci right 3.430727e-05	k: 113	n:3960000
KS ci ratio: 5.218773e-02	ci left: 1.385593e-03	ci right 1.460089e-03	k: 5633	n:3960000
SFPQ   3960000 perm   7062 sec   (561 perm/sec)   p_kst 1.422475e-03   p_cons 2.853535e-05   p_joint 2.777778e-05

Joint ci ratio: 3.720647e-01	ci left: 2.277250e-05	ci right 3.339531e-05	k: 110	n:3970000
Cons ci ratio: 3.671363e-01	ci left: 2.345799e-05	ci right 3.422085e-05	k: 113	n:3970000
KS ci ratio: 5.212764e-02	ci left: 1.385335e-03	ci right 1.459728e-03	k: 5646	n:3970000
SFPQ   3970000 perm   7097 sec   (559 perm/sec)   p_kst 1.422166e-03   p_cons 2.846348e-05   p_joint 2.770781e-05

Joint ci ratio: 3.720647e-01	ci left: 2.271528e-05	ci right 3.331140e-05	k: 110	n:3980000
Cons ci ratio: 3.671363e-01	ci left: 2.339905e-05	ci right 3.413487e-05	k: 113	n:3980000
KS ci ratio: 5.205393e-02	ci left: 1.385822e-03	ci right 1.460133e-03	k: 5662	n:3980000
SFPQ   3980000 perm   7131 sec   (558 perm/sec)   p_kst 1.422613e-03   p_cons 2.839196e-05   p_joint 2.763819e-05

Joint ci ratio: 3.720647e-01	ci left: 2.265835e-05	ci right 3.322791e-05	k: 110	n:3990000
Cons ci ratio: 3.671363e-01	ci left: 2.334040e-05	ci right 3.404932e-05	k: 113	n:3990000
KS ci ratio: 5.200347e-02	ci left: 1.385069e-03	ci right 1.459266e-03	k: 5673	n:3990000
SFPQ   3990000 perm   7165 sec   (557 perm/sec)   p_kst 1.421805e-03   p_cons 2.832080e-05   p_joint 2.756892e-05

Joint ci ratio: 3.704000e-01	ci left: 2.282839e-05	ci right 3.341806e-05	k: 111	n:4000000
Cons ci ratio: 3.671364e-01	ci left: 2.328205e-05	ci right 3.396419e-05	k: 113	n:4000000
KS ci ratio: 5.194401e-02	ci left: 1.384815e-03	ci right 1.458910e-03	k: 5686	n:4000000
SFPQ   4000000 perm   7200 sec   (556 perm/sec)   p_kst 1.421500e-03   p_cons 2.825000e-05   p_joint 2.775000e-05

Joint ci ratio: 3.704000e-01	ci left: 2.277146e-05	ci right 3.333473e-05	k: 111	n:4010000
Cons ci ratio: 3.671364e-01	ci left: 2.322399e-05	ci right 3.387950e-05	k: 113	n:4010000
KS ci ratio: 5.189843e-02	ci left: 1.383823e-03	ci right 1.457798e-03	k: 5696	n:4010000
SFPQ   4010000 perm   7235 sec   (554 perm/sec)   p_kst 1.420449e-03   p_cons 2.817955e-05   p_joint 2.768080e-05

Joint ci ratio: 3.687574e-01	ci left: 2.294046e-05	ci right 3.352356e-05	k: 112	n:4020000
Cons ci ratio: 3.655366e-01	ci left: 2.339208e-05	ci right 3.406677e-05	k: 114	n:4020000
KS ci ratio: 5.182569e-02	ci left: 1.384309e-03	ci right 1.458204e-03	k: 5712	n:4020000
SFPQ   4020000 perm   7269 sec   (553 perm/sec)   p_kst 1.420896e-03   p_cons 2.835821e-05   p_joint 2.786070e-05

Joint ci ratio: 3.655366e-01	ci left: 2.333404e-05	ci right 3.398224e-05	k: 114	n:4030000
Cons ci ratio: 3.639576e-01	ci left: 2.355943e-05	ci right 3.425302e-05	k: 115	n:4030000
KS ci ratio: 5.176683e-02	ci left: 1.384058e-03	ci right 1.457853e-03	k: 5725	n:4030000
SFPQ   4030000 perm   7304 sec   (552 perm/sec)   p_kst 1.420596e-03   p_cons 2.853598e-05   p_joint 2.828784e-05

Joint ci ratio: 3.655366e-01	ci left: 2.327628e-05	ci right 3.389813e-05	k: 114	n:4040000
Cons ci ratio: 3.639576e-01	ci left: 2.350112e-05	ci right 3.416824e-05	k: 115	n:4040000
KS ci ratio: 5.171269e-02	ci left: 1.383564e-03	ci right 1.457253e-03	k: 5737	n:4040000
SFPQ   4040000 perm   7339 sec   (550 perm/sec)   p_kst 1.420050e-03   p_cons 2.846535e-05   p_joint 2.821782e-05

Joint ci ratio: 3.639576e-01	ci left: 2.344309e-05	ci right 3.408387e-05	k: 115	n:4050000
Cons ci ratio: 3.639576e-01	ci left: 2.344309e-05	ci right 3.408387e-05	k: 115	n:4050000
KS ci ratio: 5.162725e-02	ci left: 1.384778e-03	ci right 1.458407e-03	k: 5756	n:4050000
SFPQ   4050000 perm   7374 sec   (549 perm/sec)   p_kst 1.421235e-03   p_cons 2.839506e-05   p_joint 2.839506e-05

Joint ci ratio: 3.639576e-01	ci left: 2.338535e-05	ci right 3.399992e-05	k: 115	n:4060000
Cons ci ratio: 3.639576e-01	ci left: 2.338535e-05	ci right 3.399992e-05	k: 115	n:4060000
KS ci ratio: 5.157354e-02	ci left: 1.384285e-03	ci right 1.457808e-03	k: 5768	n:4060000
SFPQ   4060000 perm   7409 sec   (548 perm/sec)   p_kst 1.420690e-03   p_cons 2.832512e-05   p_joint 2.832512e-05

Joint ci ratio: 3.639576e-01	ci left: 2.332789e-05	ci right 3.391639e-05	k: 115	n:4070000
Cons ci ratio: 3.639576e-01	ci left: 2.332789e-05	ci right 3.391639e-05	k: 115	n:4070000
KS ci ratio: 5.149771e-02	ci left: 1.385007e-03	ci right 1.458457e-03	k: 5785	n:4070000
SFPQ   4070000 perm   7444 sec   (547 perm/sec)   p_kst 1.421376e-03   p_cons 2.825553e-05   p_joint 2.825553e-05

Joint ci ratio: 3.623989e-01	ci left: 2.349345e-05	ci right 3.410063e-05	k: 116	n:4080000
Cons ci ratio: 3.623989e-01	ci left: 2.349345e-05	ci right 3.410063e-05	k: 116	n:4080000
KS ci ratio: 5.139117e-02	ci left: 1.387419e-03	ci right 1.460841e-03	k: 5809	n:4080000
SFPQ   4080000 perm   7479 sec   (546 perm/sec)   p_kst 1.423775e-03   p_cons 2.843137e-05   p_joint 2.843137e-05

Joint ci ratio: 3.623989e-01	ci left: 2.343601e-05	ci right 3.401725e-05	k: 116	n:4090000
Cons ci ratio: 3.623989e-01	ci left: 2.343601e-05	ci right 3.401725e-05	k: 116	n:4090000
KS ci ratio: 5.134703e-02	ci left: 1.386440e-03	ci right 1.459745e-03	k: 5819	n:4090000
SFPQ   4090000 perm   7514 sec   (544 perm/sec)   p_kst 1.422738e-03   p_cons 2.836186e-05   p_joint 2.836186e-05

Joint ci ratio: 3.623989e-01	ci left: 2.337885e-05	ci right 3.393428e-05	k: 116	n:4100000
Cons ci ratio: 3.623989e-01	ci left: 2.337885e-05	ci right 3.393428e-05	k: 116	n:4100000
KS ci ratio: 5.128538e-02	ci left: 1.386430e-03	ci right 1.459643e-03	k: 5833	n:4100000
SFPQ   4100000 perm   7548 sec   (543 perm/sec)   p_kst 1.422683e-03   p_cons 2.829268e-05   p_joint 2.829268e-05

Joint ci ratio: 3.623989e-01	ci left: 2.332196e-05	ci right 3.385172e-05	k: 116	n:4110000
Cons ci ratio: 3.623989e-01	ci left: 2.332196e-05	ci right 3.385172e-05	k: 116	n:4110000
KS ci ratio: 5.124151e-02	ci left: 1.385458e-03	ci right 1.458556e-03	k: 5843	n:4110000
SFPQ   4110000 perm   7584 sec   (542 perm/sec)   p_kst 1.421655e-03   p_cons 2.822384e-05   p_joint 2.822384e-05

Joint ci ratio: 3.623989e-01	ci left: 2.326536e-05	ci right 3.376955e-05	k: 116	n:4120000
Cons ci ratio: 3.608600e-01	ci left: 2.348602e-05	ci right 3.403423e-05	k: 117	n:4120000
KS ci ratio: 5.119775e-02	ci left: 1.384492e-03	ci right 1.457474e-03	k: 5853	n:4120000
SFPQ   4120000 perm   7619 sec   (541 perm/sec)   p_kst 1.420631e-03   p_cons 2.839806e-05   p_joint 2.815534e-05

Joint ci ratio: 3.623990e-01	ci left: 2.320902e-05	ci right 3.368779e-05	k: 116	n:4130000
Cons ci ratio: 3.608601e-01	ci left: 2.342916e-05	ci right 3.395182e-05	k: 117	n:4130000
KS ci ratio: 5.111484e-02	ci left: 1.385681e-03	ci right 1.458605e-03	k: 5872	n:4130000
SFPQ   4130000 perm   7656 sec   (539 perm/sec)   p_kst 1.421792e-03   p_cons 2.832930e-05   p_joint 2.808717e-05

Joint ci ratio: 3.623990e-01	ci left: 2.315296e-05	ci right 3.360642e-05	k: 116	n:4140000
Cons ci ratio: 3.593406e-01	ci left: 2.359226e-05	ci right 3.413312e-05	k: 118	n:4140000
KS ci ratio: 5.101932e-02	ci left: 1.387580e-03	ci right 1.460463e-03	k: 5894	n:4140000
SFPQ   4140000 perm   7692 sec   (538 perm/sec)   p_kst 1.423671e-03   p_cons 2.850242e-05   p_joint 2.801932e-05

Joint ci ratio: 3.608601e-01	ci left: 2.331624e-05	ci right 3.378820e-05	k: 117	n:4150000
Cons ci ratio: 3.593406e-01	ci left: 2.353541e-05	ci right 3.405087e-05	k: 118	n:4150000
KS ci ratio: 5.092865e-02	ci left: 1.389232e-03	ci right 1.462069e-03	k: 5915	n:4150000
SFPQ   4150000 perm   7728 sec   (537 perm/sec)   p_kst 1.425301e-03   p_cons 2.843373e-05   p_joint 2.819277e-05

Joint ci ratio: 3.593406e-01	ci left: 2.347883e-05	ci right 3.396902e-05	k: 118	n:4160000
Cons ci ratio: 3.578402e-01	ci left: 2.369756e-05	ci right 3.423097e-05	k: 119	n:4160000
KS ci ratio: 5.088569e-02	ci left: 1.388266e-03	ci right 1.460989e-03	k: 5925	n:4160000
SFPQ   4160000 perm   7765 sec   (536 perm/sec)   p_kst 1.424279e-03   p_cons 2.860577e-05   p_joint 2.836538e-05

Joint ci ratio: 3.593406e-01	ci left: 2.342253e-05	ci right 3.388756e-05	k: 118	n:4170000
Cons ci ratio: 3.578402e-01	ci left: 2.364073e-05	ci right 3.414888e-05	k: 119	n:4170000
KS ci ratio: 5.084712e-02	ci left: 1.387068e-03	ci right 1.459671e-03	k: 5934	n:4170000
SFPQ   4170000 perm   7800 sec   (535 perm/sec)   p_kst 1.423022e-03   p_cons 2.853717e-05   p_joint 2.829736e-05

Joint ci ratio: 3.578402e-01	ci left: 2.358418e-05	ci right 3.406719e-05	k: 119	n:4180000
Cons ci ratio: 3.563584e-01	ci left: 2.380195e-05	ci right 3.432779e-05	k: 120	n:4180000
KS ci ratio: 5.078298e-02	ci left: 1.387292e-03	ci right 1.459813e-03	k: 5949	n:4180000
SFPQ   4180000 perm   7837 sec   (533 perm/sec)   p_kst 1.423206e-03   p_cons 2.870813e-05   p_joint 2.846890e-05

Joint ci ratio: 3.563584e-01	ci left: 2.374514e-05	ci right 3.424587e-05	k: 120	n:4190000
Cons ci ratio: 3.563584e-01	ci left: 2.374514e-05	ci right 3.424587e-05	k: 120	n:4190000
KS ci ratio: 5.074465e-02	ci left: 1.386102e-03	ci right 1.458504e-03	k: 5958	n:4190000
SFPQ   4190000 perm   7873 sec   (532 perm/sec)   p_kst 1.421957e-03   p_cons 2.863962e-05   p_joint 2.863962e-05

Joint ci ratio: 3.563585e-01	ci left: 2.368861e-05	ci right 3.416433e-05	k: 120	n:4200000
Cons ci ratio: 3.563585e-01	ci left: 2.368861e-05	ci right 3.416433e-05	k: 120	n:4200000
KS ci ratio: 5.066816e-02	ci left: 1.387033e-03	ci right 1.459371e-03	k: 5976	n:4200000
SFPQ   4200000 perm   7908 sec   (531 perm/sec)   p_kst 1.422857e-03   p_cons 2.857143e-05   p_joint 2.857143e-05

Joint ci ratio: 3.578403e-01	ci left: 2.341612e-05	ci right 3.382443e-05	k: 119	n:4210000
Cons ci ratio: 3.563585e-01	ci left: 2.363234e-05	ci right 3.408318e-05	k: 120	n:4210000
KS ci ratio: 5.059202e-02	ci left: 1.387960e-03	ci right 1.460235e-03	k: 5994	n:4210000
SFPQ   4210000 perm   7947 sec   (530 perm/sec)   p_kst 1.423753e-03   p_cons 2.850356e-05   p_joint 2.826603e-05

Joint ci ratio: 3.578403e-01	ci left: 2.336063e-05	ci right 3.374428e-05	k: 119	n:4220000
Cons ci ratio: 3.563585e-01	ci left: 2.357634e-05	ci right 3.400241e-05	k: 120	n:4220000
KS ci ratio: 5.054147e-02	ci left: 1.387479e-03	ci right 1.459654e-03	k: 6006	n:4220000
SFPQ   4220000 perm   7984 sec   (529 perm/sec)   p_kst 1.423223e-03   p_cons 2.843602e-05   p_joint 2.819905e-05

Joint ci ratio: 3.578403e-01	ci left: 2.330540e-05	ci right 3.366450e-05	k: 119	n:4230000
Cons ci ratio: 3.563585e-01	ci left: 2.352060e-05	ci right 3.392203e-05	k: 120	n:4230000
KS ci ratio: 5.049528e-02	ci left: 1.386766e-03	ci right 1.458836e-03	k: 6017	n:4230000
SFPQ   4230000 perm   8020 sec   (527 perm/sec)   p_kst 1.422459e-03   p_cons 2.836879e-05   p_joint 2.813239e-05

Joint ci ratio: 3.578403e-01	ci left: 2.325044e-05	ci right 3.358511e-05	k: 119	n:4240000
Cons ci ratio: 3.563585e-01	ci left: 2.346513e-05	ci right 3.384203e-05	k: 120	n:4240000
KS ci ratio: 5.043246e-02	ci left: 1.386988e-03	ci right 1.458978e-03	k: 6032	n:4240000
SFPQ   4240000 perm   8057 sec   (526 perm/sec)   p_kst 1.422642e-03   p_cons 2.830189e-05   p_joint 2.806604e-05

Joint ci ratio: 3.563585e-01	ci left: 2.340992e-05	ci right 3.376240e-05	k: 120	n:4250000
Cons ci ratio: 3.548950e-01	ci left: 2.362419e-05	ci right 3.401863e-05	k: 121	n:4250000
KS ci ratio: 5.032823e-02	ci left: 1.389533e-03	ci right 1.461502e-03	k: 6057	n:4250000
SFPQ   4250000 perm   8093 sec   (525 perm/sec)   p_kst 1.425176e-03   p_cons 2.847059e-05   p_joint 2.823529e-05

Joint ci ratio: 3.563585e-01	ci left: 2.335497e-05	ci right 3.368314e-05	k: 120	n:4260000
Cons ci ratio: 3.548950e-01	ci left: 2.356874e-05	ci right 3.393877e-05	k: 121	n:4260000
KS ci ratio: 5.026603e-02	ci left: 1.389748e-03	ci right 1.461636e-03	k: 6072	n:4260000
SFPQ   4260000 perm   8130 sec   (524 perm/sec)   p_kst 1.425352e-03   p_cons 2.840376e-05   p_joint 2.816901e-05

Joint ci ratio: 3.563585e-01	ci left: 2.330027e-05	ci right 3.360426e-05	k: 120	n:4270000
Cons ci ratio: 3.534494e-01	ci left: 2.372690e-05	ci right 3.411423e-05	k: 122	n:4270000
KS ci ratio: 5.019994e-02	ci left: 1.390194e-03	ci right 1.462007e-03	k: 6088	n:4270000
SFPQ   4270000 perm   8166 sec   (523 perm/sec)   p_kst 1.425761e-03   p_cons 2.857143e-05   p_joint 2.810304e-05

Joint ci ratio: 3.563586e-01	ci left: 2.324583e-05	ci right 3.352575e-05	k: 120	n:4280000
Cons ci ratio: 3.534494e-01	ci left: 2.367146e-05	ci right 3.403453e-05	k: 122	n:4280000
KS ci ratio: 5.011355e-02	ci left: 1.391791e-03	ci right 1.463560e-03	k: 6109	n:4280000
SFPQ   4280000 perm   8203 sec   (522 perm/sec)   p_kst 1.427336e-03   p_cons 2.850467e-05   p_joint 2.803738e-05

Joint ci ratio: 3.563586e-01	ci left: 2.319164e-05	ci right 3.344760e-05	k: 120	n:4290000
Cons ci ratio: 3.534494e-01	ci left: 2.361628e-05	ci right 3.395519e-05	k: 122	n:4290000
KS ci ratio: 5.002353e-02	ci left: 1.393610e-03	ci right 1.465340e-03	k: 6131	n:4290000
SFPQ   4290000 perm   8240 sec   (521 perm/sec)   p_kst 1.429138e-03   p_cons 2.843823e-05   p_joint 2.797203e-05

Joint ci ratio: 3.563586e-01	ci left: 2.313771e-05	ci right 3.336981e-05	k: 120	n:4300000
Cons ci ratio: 3.534494e-01	ci left: 2.356136e-05	ci right 3.387623e-05	k: 122	n:4300000
KS ci ratio: 4.995025e-02	ci left: 1.394503e-03	ci right 1.466171e-03	k: 6149	n:4300000
SFPQ   4300000 perm   8276 sec   (520 perm/sec)   p_kst 1.430000e-03   p_cons 2.837209e-05   p_joint 2.790698e-05

Joint ci ratio: 3.563586e-01	ci left: 2.308403e-05	ci right 3.329239e-05	k: 120	n:4310000
Cons ci ratio: 3.520213e-01	ci left: 2.371816e-05	ci right 3.405012e-05	k: 123	n:4310000
KS ci ratio: 4.989755e-02	ci left: 1.394246e-03	ci right 1.465823e-03	k: 6162	n:4310000
SFPQ   4310000 perm   8313 sec   (518 perm/sec)   p_kst 1.429698e-03   p_cons 2.853828e-05   p_joint 2.784223e-05

Joint ci ratio: 3.593408e-01	ci left: 2.260924e-05	ci right 3.271091e-05	k: 118	n:4320000
Cons ci ratio: 3.492162e-01	ci left: 2.408545e-05	ci right 3.447487e-05	k: 125	n:4320000
KS ci ratio: 4.982886e-02	ci left: 1.394905e-03	ci right 1.466414e-03	k: 6179	n:4320000
SFPQ   4320000 perm   8351 sec   (517 perm/sec)   p_kst 1.430324e-03   p_cons 2.893519e-05   p_joint 2.731481e-05

Joint ci ratio: 3.593408e-01	ci left: 2.255703e-05	ci right 3.263537e-05	k: 118	n:4330000
Cons ci ratio: 3.478386e-01	ci left: 2.424056e-05	ci right 3.464634e-05	k: 126	n:4330000
KS ci ratio: 4.976447e-02	ci left: 1.395333e-03	ci right 1.466769e-03	k: 6195	n:4330000
SFPQ   4330000 perm   8390 sec   (516 perm/sec)   p_kst 1.430716e-03   p_cons 2.909931e-05   p_joint 2.725173e-05

Joint ci ratio: 3.593408e-01	ci left: 2.250505e-05	ci right 3.256017e-05	k: 118	n:4340000
Cons ci ratio: 3.478386e-01	ci left: 2.418470e-05	ci right 3.456651e-05	k: 126	n:4340000
KS ci ratio: 4.967631e-02	ci left: 1.397124e-03	ci right 1.468521e-03	k: 6217	n:4340000
SFPQ   4340000 perm   8428 sec   (515 perm/sec)   p_kst 1.432488e-03   p_cons 2.903226e-05   p_joint 2.718894e-05

Joint ci ratio: 3.593409e-01	ci left: 2.245332e-05	ci right 3.248532e-05	k: 118	n:4350000
Cons ci ratio: 3.478386e-01	ci left: 2.412910e-05	ci right 3.448704e-05	k: 126	n:4350000
KS ci ratio: 4.960853e-02	ci left: 1.397771e-03	ci right 1.469102e-03	k: 6234	n:4350000
SFPQ   4350000 perm   8464 sec   (514 perm/sec)   p_kst 1.433103e-03   p_cons 2.896552e-05   p_joint 2.712644e-05

Joint ci ratio: 3.593409e-01	ci left: 2.240182e-05	ci right 3.241081e-05	k: 118	n:4360000
Cons ci ratio: 3.478386e-01	ci left: 2.407376e-05	ci right 3.440794e-05	k: 126	n:4360000
KS ci ratio: 4.955293e-02	ci left: 1.397737e-03	ci right 1.468983e-03	k: 6248	n:4360000
SFPQ   4360000 perm   8503 sec   (513 perm/sec)   p_kst 1.433028e-03   p_cons 2.889908e-05   p_joint 2.706422e-05

Joint ci ratio: 3.593409e-01	ci left: 2.235056e-05	ci right 3.233665e-05	k: 118	n:4370000
Cons ci ratio: 3.478387e-01	ci left: 2.401867e-05	ci right 3.432921e-05	k: 126	n:4370000
KS ci ratio: 4.948169e-02	ci left: 1.398606e-03	ci right 1.469791e-03	k: 6266	n:4370000
SFPQ   4370000 perm   8540 sec   (512 perm/sec)   p_kst 1.433867e-03   p_cons 2.883295e-05   p_joint 2.700229e-05

Joint ci ratio: 3.578405e-01	ci left: 2.250727e-05	ci right 3.251161e-05	k: 119	n:4380000
Cons ci ratio: 3.464772e-01	ci left: 2.417224e-05	ci right 3.449897e-05	k: 127	n:4380000
KS ci ratio: 4.940289e-02	ci left: 1.399923e-03	ci right 1.471058e-03	k: 6286	n:4380000
SFPQ   4380000 perm   8578 sec   (511 perm/sec)   p_kst 1.435160e-03   p_cons 2.899543e-05   p_joint 2.716895e-05

Joint ci ratio: 3.578405e-01	ci left: 2.245600e-05	ci right 3.243755e-05	k: 119	n:4390000
Cons ci ratio: 3.464772e-01	ci left: 2.411718e-05	ci right 3.442039e-05	k: 127	n:4390000
KS ci ratio: 4.934014e-02	ci left: 1.400334e-03	ci right 1.471397e-03	k: 6302	n:4390000
SFPQ   4390000 perm   8616 sec   (510 perm/sec)   p_kst 1.435535e-03   p_cons 2.892938e-05   p_joint 2.710706e-05

Joint ci ratio: 3.563587e-01	ci left: 2.261185e-05	ci right 3.261141e-05	k: 120	n:4400000
Cons ci ratio: 3.464772e-01	ci left: 2.406237e-05	ci right 3.434216e-05	k: 127	n:4400000
KS ci ratio: 4.927372e-02	ci left: 1.400967e-03	ci right 1.471964e-03	k: 6319	n:4400000
SFPQ   4400000 perm   8656 sec   (508 perm/sec)   p_kst 1.436136e-03   p_cons 2.886364e-05   p_joint 2.727273e-05

Joint ci ratio: 3.563587e-01	ci left: 2.256058e-05	ci right 3.253746e-05	k: 120	n:4410000
Cons ci ratio: 3.464773e-01	ci left: 2.400780e-05	ci right 3.426428e-05	k: 127	n:4410000
KS ci ratio: 4.922313e-02	ci left: 1.400702e-03	ci right 1.471611e-03	k: 6332	n:4410000
SFPQ   4410000 perm   8694 sec   (507 perm/sec)   p_kst 1.435828e-03   p_cons 2.879819e-05   p_joint 2.721088e-05

Joint ci ratio: 3.563587e-01	ci left: 2.250954e-05	ci right 3.246385e-05	k: 120	n:4420000
Cons ci ratio: 3.464773e-01	ci left: 2.395349e-05	ci right 3.418676e-05	k: 127	n:4420000
KS ci ratio: 4.917269e-02	ci left: 1.400438e-03	ci right 1.471259e-03	k: 6345	n:4420000
SFPQ   4420000 perm   8732 sec   (506 perm/sec)   p_kst 1.435520e-03   p_cons 2.873303e-05   p_joint 2.714932e-05

Joint ci ratio: 3.563587e-01	ci left: 2.245872e-05	ci right 3.239057e-05	k: 120	n:4430000
Cons ci ratio: 3.464773e-01	ci left: 2.389942e-05	ci right 3.410959e-05	k: 127	n:4430000
KS ci ratio: 4.913015e-02	ci left: 1.399729e-03	ci right 1.470451e-03	k: 6356	n:4430000
SFPQ   4430000 perm   8771 sec   (505 perm/sec)   p_kst 1.434763e-03   p_cons 2.866817e-05   p_joint 2.708804e-05

Joint ci ratio: 3.563587e-01	ci left: 2.240814e-05	ci right 3.231761e-05	k: 120	n:4440000
Cons ci ratio: 3.464773e-01	ci left: 2.384559e-05	ci right 3.403277e-05	k: 127	n:4440000
KS ci ratio: 4.905687e-02	ci left: 1.400803e-03	ci right 1.471471e-03	k: 6375	n:4440000
SFPQ   4440000 perm   8809 sec   (504 perm/sec)   p_kst 1.435811e-03   p_cons 2.860360e-05   p_joint 2.702703e-05

Joint ci ratio: 3.548952e-01	ci left: 2.256243e-05	ci right 3.248970e-05	k: 121	n:4450000
Cons ci ratio: 3.451317e-01	ci left: 2.399721e-05	ci right 3.420045e-05	k: 128	n:4450000
KS ci ratio: 4.899926e-02	ci left: 1.400985e-03	ci right 1.471576e-03	k: 6390	n:4450000
SFPQ   4450000 perm   8847 sec   (503 perm/sec)   p_kst 1.435955e-03   p_cons 2.876404e-05   p_joint 2.719101e-05

Joint ci ratio: 3.548952e-01	ci left: 2.251184e-05	ci right 3.241686e-05	k: 121	n:4460000
Cons ci ratio: 3.451317e-01	ci left: 2.394340e-05	ci right 3.412377e-05	k: 128	n:4460000
KS ci ratio: 4.894568e-02	ci left: 1.400944e-03	ci right 1.471454e-03	k: 6404	n:4460000
SFPQ   4460000 perm   8887 sec   (502 perm/sec)   p_kst 1.435874e-03   p_cons 2.869955e-05   p_joint 2.713004e-05

Joint ci ratio: 3.548952e-01	ci left: 2.246148e-05	ci right 3.234434e-05	k: 121	n:4470000
Cons ci ratio: 3.438017e-01	ci left: 2.409420e-05	ci right 3.429042e-05	k: 129	n:4470000
KS ci ratio: 4.890372e-02	ci left: 1.400241e-03	ci right 1.470653e-03	k: 6415	n:4470000
SFPQ   4470000 perm   8926 sec   (501 perm/sec)   p_kst 1.435123e-03   p_cons 2.885906e-05   p_joint 2.706935e-05

Joint ci ratio: 3.548953e-01	ci left: 2.241134e-05	ci right 3.227214e-05	k: 121	n:4480000
Cons ci ratio: 3.438017e-01	ci left: 2.404042e-05	ci right 3.421388e-05	k: 129	n:4480000
KS ci ratio: 4.884285e-02	ci left: 1.400643e-03	ci right 1.470986e-03	k: 6431	n:4480000
SFPQ   4480000 perm   8965 sec   (500 perm/sec)   p_kst 1.435491e-03   p_cons 2.879464e-05   p_joint 2.700893e-05

Joint ci ratio: 3.520215e-01	ci left: 2.276732e-05	ci right 3.268508e-05	k: 123	n:4490000
Cons ci ratio: 3.438017e-01	ci left: 2.398688e-05	ci right 3.413768e-05	k: 129	n:4490000
KS ci ratio: 4.878221e-02	ci left: 1.401044e-03	ci right 1.471317e-03	k: 6447	n:4490000
SFPQ   4490000 perm   9003 sec   (499 perm/sec)   p_kst 1.435857e-03   p_cons 2.873051e-05   p_joint 2.739421e-05

Joint ci ratio: 3.506106e-01	ci left: 2.291934e-05	ci right 3.285420e-05	k: 124	n:4500000
Cons ci ratio: 3.424870e-01	ci left: 2.413665e-05	ci right 3.430312e-05	k: 130	n:4500000
KS ci ratio: 4.871047e-02	ci left: 1.402101e-03	ci right 1.472321e-03	k: 6466	n:4500000
SFPQ   4500000 perm   9041 sec   (498 perm/sec)   p_kst 1.436889e-03   p_cons 2.888889e-05   p_joint 2.755556e-05

Joint ci ratio: 3.506106e-01	ci left: 2.286852e-05	ci right 3.278136e-05	k: 124	n:4510000
Cons ci ratio: 3.424870e-01	ci left: 2.408313e-05	ci right 3.422706e-05	k: 130	n:4510000
KS ci ratio: 4.865407e-02	ci left: 1.402278e-03	ci right 1.472423e-03	k: 6481	n:4510000
SFPQ   4510000 perm   9079 sec   (497 perm/sec)   p_kst 1.437029e-03   p_cons 2.882483e-05   p_joint 2.749446e-05

Joint ci ratio: 3.506106e-01	ci left: 2.281792e-05	ci right 3.270883e-05	k: 124	n:4520000
Cons ci ratio: 3.411872e-01	ci left: 2.423209e-05	ci right 3.439149e-05	k: 131	n:4520000
KS ci ratio: 4.861286e-02	ci left: 1.401579e-03	ci right 1.471628e-03	k: 6492	n:4520000
SFPQ   4520000 perm   9117 sec   (496 perm/sec)   p_kst 1.436283e-03   p_cons 2.898230e-05   p_joint 2.743363e-05

Joint ci ratio: 3.492165e-01	ci left: 2.296890e-05	ci right 3.287670e-05	k: 125	n:4530000
Cons ci ratio: 3.411872e-01	ci left: 2.417860e-05	ci right 3.431557e-05	k: 131	n:4530000
KS ci ratio: 4.853813e-02	ci left: 1.402847e-03	ci right 1.472848e-03	k: 6512	n:4530000
SFPQ   4530000 perm   9155 sec   (495 perm/sec)   p_kst 1.437528e-03   p_cons 2.891832e-05   p_joint 2.759382e-05

Joint ci ratio: 3.754634e-01	ci left: 1.951425e-05	ci right 2.872079e-05	k: 108	n:4540000
Cons ci ratio: 3.411872e-01	ci left: 2.412535e-05	ci right 3.423999e-05	k: 131	n:4540000
KS ci ratio: 4.848233e-02	ci left: 1.403021e-03	ci right 1.472948e-03	k: 6527	n:4540000
SFPQ   4540000 perm   9196 sec   (494 perm/sec)   p_kst 1.437665e-03   p_cons 2.885463e-05   p_joint 2.378855e-05

Joint ci ratio: 3.754634e-01	ci left: 1.947136e-05	ci right 2.865767e-05	k: 108	n:4550000
Cons ci ratio: 3.411872e-01	ci left: 2.407232e-05	ci right 3.416474e-05	k: 131	n:4550000
KS ci ratio: 4.843414e-02	ci left: 1.402760e-03	ci right 1.472603e-03	k: 6540	n:4550000
SFPQ   4550000 perm   9236 sec   (493 perm/sec)   p_kst 1.437363e-03   p_cons 2.879121e-05   p_joint 2.373626e-05

Joint ci ratio: 3.737528e-01	ci left: 1.962731e-05	ci right 2.883467e-05	k: 109	n:4560000
Cons ci ratio: 3.399021e-01	ci left: 2.422008e-05	ci right 3.432779e-05	k: 132	n:4560000
KS ci ratio: 4.837869e-02	ci left: 1.402933e-03	ci right 1.472702e-03	k: 6555	n:4560000
SFPQ   4560000 perm   9275 sec   (492 perm/sec)   p_kst 1.437500e-03   p_cons 2.894737e-05   p_joint 2.390351e-05

Joint ci ratio: 3.737528e-01	ci left: 1.958436e-05	ci right 2.877158e-05	k: 109	n:4570000
Cons ci ratio: 3.399021e-01	ci left: 2.416708e-05	ci right 3.425268e-05	k: 132	n:4570000
KS ci ratio: 4.833818e-02	ci left: 1.402241e-03	ci right 1.471916e-03	k: 6566	n:4570000
SFPQ   4570000 perm   9314 sec   (491 perm/sec)   p_kst 1.436761e-03   p_cons 2.888403e-05   p_joint 2.385120e-05

Joint ci ratio: 3.737528e-01	ci left: 1.954160e-05	ci right 2.870876e-05	k: 109	n:4580000
Cons ci ratio: 3.399021e-01	ci left: 2.411431e-05	ci right 3.417789e-05	k: 132	n:4580000
KS ci ratio: 4.827204e-02	ci left: 1.403062e-03	ci right 1.472680e-03	k: 6584	n:4580000
SFPQ   4580000 perm   9353 sec   (490 perm/sec)   p_kst 1.437555e-03   p_cons 2.882096e-05   p_joint 2.379913e-05

Joint ci ratio: 3.737528e-01	ci left: 1.949902e-05	ci right 2.864621e-05	k: 109	n:4590000
Cons ci ratio: 3.399021e-01	ci left: 2.406178e-05	ci right 3.410343e-05	k: 132	n:4590000
KS ci ratio: 4.818792e-02	ci left: 1.404956e-03	ci right 1.474543e-03	k: 6607	n:4590000
SFPQ   4590000 perm   9394 sec   (489 perm/sec)   p_kst 1.439434e-03   p_cons 2.875817e-05   p_joint 2.374728e-05

Joint ci ratio: 3.737528e-01	ci left: 1.945664e-05	ci right 2.858394e-05	k: 109	n:4600000
Cons ci ratio: 3.399022e-01	ci left: 2.400947e-05	ci right 3.402929e-05	k: 132	n:4600000
KS ci ratio: 4.814788e-02	ci left: 1.404264e-03	ci right 1.473757e-03	k: 6618	n:4600000
SFPQ   4600000 perm   9434 sec   (488 perm/sec)   p_kst 1.438696e-03   p_cons 2.869565e-05   p_joint 2.369565e-05

Joint ci ratio: 3.737528e-01	ci left: 1.941443e-05	ci right 2.852194e-05	k: 109	n:4610000
Cons ci ratio: 3.399022e-01	ci left: 2.395739e-05	ci right 3.395548e-05	k: 132	n:4610000
KS ci ratio: 4.808615e-02	ci left: 1.404861e-03	ci right 1.474292e-03	k: 6635	n:4610000
SFPQ   4610000 perm   9475 sec   (487 perm/sec)   p_kst 1.439262e-03   p_cons 2.863341e-05   p_joint 2.364425e-05

Joint ci ratio: 3.737528e-01	ci left: 1.937241e-05	ci right 2.846020e-05	k: 109	n:4620000
Cons ci ratio: 3.399022e-01	ci left: 2.390553e-05	ci right 3.388198e-05	k: 132	n:4620000
KS ci ratio: 4.801382e-02	ci left: 1.406097e-03	ci right 1.475482e-03	k: 6655	n:4620000
SFPQ   4620000 perm   9515 sec   (486 perm/sec)   p_kst 1.440476e-03   p_cons 2.857143e-05   p_joint 2.359307e-05

Joint ci ratio: 3.737529e-01	ci left: 1.933057e-05	ci right 2.839873e-05	k: 109	n:4630000
Cons ci ratio: 3.399022e-01	ci left: 2.385390e-05	ci right 3.380880e-05	k: 132	n:4630000
KS ci ratio: 4.792744e-02	ci left: 1.408182e-03	ci right 1.477541e-03	k: 6679	n:4630000
SFPQ   4630000 perm   9556 sec   (485 perm/sec)   p_kst 1.442549e-03   p_cons 2.850972e-05   p_joint 2.354212e-05

Joint ci ratio: 3.737529e-01	ci left: 1.928891e-05	ci right 2.833753e-05	k: 109	n:4640000
Cons ci ratio: 3.386315e-01	ci left: 2.399965e-05	ci right 3.396974e-05	k: 133	n:4640000
KS ci ratio: 4.785583e-02	ci left: 1.409406e-03	ci right 1.478719e-03	k: 6699	n:4640000
SFPQ   4640000 perm   9596 sec   (484 perm/sec)   p_kst 1.443750e-03   p_cons 2.866379e-05   p_joint 2.349138e-05

Joint ci ratio: 3.737529e-01	ci left: 1.924742e-05	ci right 2.827659e-05	k: 109	n:4650000
Cons ci ratio: 3.386315e-01	ci left: 2.394804e-05	ci right 3.389669e-05	k: 133	n:4650000
KS ci ratio: 4.780235e-02	ci left: 1.409562e-03	ci right 1.478803e-03	k: 6714	n:4650000
SFPQ   4650000 perm   9636 sec   (483 perm/sec)   p_kst 1.443871e-03   p_cons 2.860215e-05   p_joint 2.344086e-05

Joint ci ratio: 3.771978e-01	ci left: 1.881744e-05	ci right 2.774640e-05	k: 107	n:4660000
Cons ci ratio: 3.386315e-01	ci left: 2.389665e-05	ci right 3.382395e-05	k: 133	n:4660000
KS ci ratio: 4.775259e-02	ci left: 1.409506e-03	ci right 1.478670e-03	k: 6728	n:4660000
SFPQ   4660000 perm   9676 sec   (482 perm/sec)   p_kst 1.443777e-03   p_cons 2.854077e-05   p_joint 2.296137e-05

Joint ci ratio: 3.771978e-01	ci left: 1.877714e-05	ci right 2.768699e-05	k: 107	n:4670000
Cons ci ratio: 3.386315e-01	ci left: 2.384547e-05	ci right 3.375152e-05	k: 133	n:4670000
KS ci ratio: 4.768530e-02	ci left: 1.410507e-03	ci right 1.479621e-03	k: 6747	n:4670000
SFPQ   4670000 perm   9717 sec   (481 perm/sec)   p_kst 1.444754e-03   p_cons 2.847966e-05   p_joint 2.291221e-05

Joint ci ratio: 3.789563e-01	ci left: 1.854365e-05	ci right 2.739394e-05	k: 106	n:4680000
Cons ci ratio: 3.361323e-01	ci left: 2.418567e-05	ci right 3.414282e-05	k: 135	n:4680000
KS ci ratio: 4.763944e-02	ci left: 1.410238e-03	ci right 1.479270e-03	k: 6760	n:4680000
SFPQ   4680000 perm   9757 sec   (480 perm/sec)   p_kst 1.444444e-03   p_cons 2.884615e-05   p_joint 2.264957e-05

Joint ci ratio: 3.789563e-01	ci left: 1.850411e-05	ci right 2.733553e-05	k: 106	n:4690000
Cons ci ratio: 3.361323e-01	ci left: 2.413411e-05	ci right 3.407002e-05	k: 135	n:4690000
KS ci ratio: 4.758668e-02	ci left: 1.410392e-03	ci right 1.479352e-03	k: 6775	n:4690000
SFPQ   4690000 perm   9797 sec   (479 perm/sec)   p_kst 1.444563e-03   p_cons 2.878465e-05   p_joint 2.260128e-05

Joint ci ratio: 3.771978e-01	ci left: 1.865729e-05	ci right 2.751026e-05	k: 107	n:4700000
Cons ci ratio: 3.361323e-01	ci left: 2.408276e-05	ci right 3.399754e-05	k: 135	n:4700000
KS ci ratio: 4.754110e-02	ci left: 1.410124e-03	ci right 1.479003e-03	k: 6788	n:4700000
SFPQ   4700000 perm   9839 sec   (478 perm/sec)   p_kst 1.444255e-03   p_cons 2.872340e-05   p_joint 2.276596e-05

Joint ci ratio: 3.862448e-01	ci left: 1.765795e-05	ci right 2.628891e-05	k: 102	n:4710000
Cons ci ratio: 3.361323e-01	ci left: 2.403162e-05	ci right 3.392535e-05	k: 135	n:4710000
KS ci ratio: 4.750615e-02	ci left: 1.409228e-03	ci right 1.478012e-03	k: 6798	n:4710000
SFPQ   4710000 perm   9878 sec   (477 perm/sec)   p_kst 1.443312e-03   p_cons 2.866242e-05   p_joint 2.165605e-05

Joint ci ratio: 3.843833e-01	ci left: 1.781189e-05	ci right 2.646550e-05	k: 103	n:4720000
Cons ci ratio: 3.361323e-01	ci left: 2.398071e-05	ci right 3.385348e-05	k: 135	n:4720000
KS ci ratio: 4.746429e-02	ci left: 1.408754e-03	ci right 1.477453e-03	k: 6810	n:4720000
SFPQ   4720000 perm   9918 sec   (476 perm/sec)   p_kst 1.442797e-03   p_cons 2.860169e-05   p_joint 2.182203e-05

Joint ci ratio: 3.825485e-01	ci left: 1.796526e-05	ci right 2.664125e-05	k: 104	n:4730000
Cons ci ratio: 3.349033e-01	ci left: 2.412362e-05	ci right 3.401107e-05	k: 136	n:4730000
KS ci ratio: 4.739126e-02	ci left: 1.410163e-03	ci right 1.478822e-03	k: 6831	n:4730000
SFPQ   4730000 perm   9959 sec   (475 perm/sec)   p_kst 1.444186e-03   p_cons 2.875264e-05   p_joint 2.198732e-05

Joint ci ratio: 3.825486e-01	ci left: 1.792736e-05	ci right 2.658505e-05	k: 104	n:4740000
Cons ci ratio: 3.349033e-01	ci left: 2.407272e-05	ci right 3.393931e-05	k: 136	n:4740000
KS ci ratio: 4.734278e-02	ci left: 1.410107e-03	ci right 1.478690e-03	k: 6845	n:4740000
SFPQ   4740000 perm   10000 sec   (474 perm/sec)   p_kst 1.444093e-03   p_cons 2.869198e-05   p_joint 2.194093e-05

Joint ci ratio: 3.825486e-01	ci left: 1.788962e-05	ci right 2.652908e-05	k: 104	n:4750000
Cons ci ratio: 3.349033e-01	ci left: 2.402205e-05	ci right 3.386786e-05	k: 136	n:4750000
KS ci ratio: 4.731517e-02	ci left: 1.408802e-03	ci right 1.477281e-03	k: 6853	n:4750000
SFPQ   4750000 perm   10041 sec   (473 perm/sec)   p_kst 1.442737e-03   p_cons 2.863158e-05   p_joint 2.189474e-05

Joint ci ratio: 3.789564e-01	ci left: 1.823199e-05	ci right 2.693354e-05	k: 106	n:4760000
Cons ci ratio: 3.336877e-01	ci left: 2.416403e-05	ci right 3.402437e-05	k: 137	n:4760000
KS ci ratio: 4.727037e-02	ci left: 1.408541e-03	ci right 1.476941e-03	k: 6866	n:4760000
SFPQ   4760000 perm   10082 sec   (472 perm/sec)   p_kst 1.442437e-03   p_cons 2.878151e-05   p_joint 2.226891e-05

Joint ci ratio: 3.789564e-01	ci left: 1.819377e-05	ci right 2.687708e-05	k: 106	n:4770000
Cons ci ratio: 3.336877e-01	ci left: 2.411337e-05	ci right 3.395304e-05	k: 137	n:4770000
KS ci ratio: 4.720852e-02	ci left: 1.409318e-03	ci right 1.477663e-03	k: 6884	n:4770000
SFPQ   4770000 perm   10122 sec   (471 perm/sec)   p_kst 1.443187e-03   p_cons 2.872117e-05   p_joint 2.222222e-05

Joint ci ratio: 3.789564e-01	ci left: 1.815571e-05	ci right 2.682085e-05	k: 106	n:4780000
Cons ci ratio: 3.336877e-01	ci left: 2.406293e-05	ci right 3.388200e-05	k: 137	n:4780000
KS ci ratio: 4.712641e-02	ci left: 1.411331e-03	ci right 1.479652e-03	k: 6908	n:4780000
SFPQ   4780000 perm   10164 sec   (470 perm/sec)   p_kst 1.445188e-03   p_cons 2.866109e-05   p_joint 2.217573e-05

Joint ci ratio: 3.789564e-01	ci left: 1.811780e-05	ci right 2.676485e-05	k: 106	n:4790000
Cons ci ratio: 3.336877e-01	ci left: 2.401269e-05	ci right 3.381127e-05	k: 137	n:4790000
KS ci ratio: 4.706852e-02	ci left: 1.411892e-03	ci right 1.480154e-03	k: 6925	n:4790000
SFPQ   4790000 perm   10205 sec   (469 perm/sec)   p_kst 1.445720e-03   p_cons 2.860125e-05   p_joint 2.212944e-05

Joint ci ratio: 3.825486e-01	ci left: 1.770327e-05	ci right 2.625273e-05	k: 104	n:4800000
Cons ci ratio: 3.324852e-01	ci left: 2.415358e-05	ci right 3.396652e-05	k: 138	n:4800000
KS ci ratio: 4.700407e-02	ci left: 1.412862e-03	ci right 1.481075e-03	k: 6944	n:4800000
SFPQ   4800000 perm   10246 sec   (468 perm/sec)   p_kst 1.446667e-03   p_cons 2.875000e-05   p_joint 2.166667e-05

Joint ci ratio: 3.825486e-01	ci left: 1.766646e-05	ci right 2.619815e-05	k: 104	n:4810000
Cons ci ratio: 3.324852e-01	ci left: 2.410336e-05	ci right 3.389591e-05	k: 138	n:4810000
KS ci ratio: 4.696015e-02	ci left: 1.412596e-03	ci right 1.480730e-03	k: 6957	n:4810000
SFPQ   4810000 perm   10287 sec   (468 perm/sec)   p_kst 1.446362e-03   p_cons 2.869023e-05   p_joint 2.162162e-05

Joint ci ratio: 3.825486e-01	ci left: 1.762981e-05	ci right 2.614380e-05	k: 104	n:4820000
Cons ci ratio: 3.324852e-01	ci left: 2.405335e-05	ci right 3.382558e-05	k: 138	n:4820000
KS ci ratio: 4.691972e-02	ci left: 1.412125e-03	ci right 1.480177e-03	k: 6969	n:4820000
SFPQ   4820000 perm   10328 sec   (467 perm/sec)   p_kst 1.445851e-03   p_cons 2.863071e-05   p_joint 2.157676e-05

Joint ci ratio: 3.825486e-01	ci left: 1.759331e-05	ci right 2.608967e-05	k: 104	n:4830000
Cons ci ratio: 3.324852e-01	ci left: 2.400355e-05	ci right 3.375555e-05	k: 138	n:4830000
KS ci ratio: 4.686931e-02	ci left: 1.412271e-03	ci right 1.480254e-03	k: 6984	n:4830000
SFPQ   4830000 perm   10370 sec   (466 perm/sec)   p_kst 1.445963e-03   p_cons 2.857143e-05   p_joint 2.153209e-05

Joint ci ratio: 3.825486e-01	ci left: 1.755696e-05	ci right 2.603577e-05	k: 104	n:4840000
Cons ci ratio: 3.324853e-01	ci left: 2.395396e-05	ci right 3.368581e-05	k: 138	n:4840000
KS ci ratio: 4.680567e-02	ci left: 1.413233e-03	ci right 1.481168e-03	k: 7003	n:4840000
SFPQ   4840000 perm   10411 sec   (465 perm/sec)   p_kst 1.446901e-03   p_cons 2.851240e-05   p_joint 2.148760e-05

Joint ci ratio: 3.825486e-01	ci left: 1.752076e-05	ci right 2.598209e-05	k: 104	n:4850000
Cons ci ratio: 3.324853e-01	ci left: 2.390457e-05	ci right 3.361635e-05	k: 138	n:4850000
KS ci ratio: 4.675230e-02	ci left: 1.413579e-03	ci right 1.481451e-03	k: 7019	n:4850000
SFPQ   4850000 perm   10453 sec   (464 perm/sec)   p_kst 1.447216e-03   p_cons 2.845361e-05   p_joint 2.144330e-05

Joint ci ratio: 3.825487e-01	ci left: 1.748471e-05	ci right 2.592863e-05	k: 104	n:4860000
Cons ci ratio: 3.324853e-01	ci left: 2.385538e-05	ci right 3.354718e-05	k: 138	n:4860000
KS ci ratio: 4.671240e-02	ci left: 1.413111e-03	ci right 1.480901e-03	k: 7031	n:4860000
SFPQ   4860000 perm   10495 sec   (463 perm/sec)   p_kst 1.446708e-03   p_cons 2.839506e-05   p_joint 2.139918e-05

Joint ci ratio: 3.825487e-01	ci left: 1.744881e-05	ci right 2.587538e-05	k: 104	n:4870000
Cons ci ratio: 3.324853e-01	ci left: 2.380640e-05	ci right 3.347830e-05	k: 138	n:4870000
KS ci ratio: 4.667592e-02	ci left: 1.412442e-03	ci right 1.480145e-03	k: 7042	n:4870000
SFPQ   4870000 perm   10539 sec   (462 perm/sec)   p_kst 1.445996e-03   p_cons 2.833676e-05   p_joint 2.135524e-05

Joint ci ratio: 3.825487e-01	ci left: 1.741305e-05	ci right 2.582236e-05	k: 104	n:4880000
Cons ci ratio: 3.324853e-01	ci left: 2.375762e-05	ci right 3.340970e-05	k: 138	n:4880000
KS ci ratio: 4.662629e-02	ci left: 1.412585e-03	ci right 1.480222e-03	k: 7057	n:4880000
SFPQ   4880000 perm   10582 sec   (461 perm/sec)   p_kst 1.446107e-03   p_cons 2.827869e-05   p_joint 2.131148e-05

Joint ci ratio: 3.807399e-01	ci left: 1.756232e-05	ci right 2.599358e-05	k: 105	n:4890000
Cons ci ratio: 3.312957e-01	ci left: 2.389649e-05	ci right 3.356285e-05	k: 139	n:4890000
KS ci ratio: 4.655376e-02	ci left: 1.414143e-03	ci right 1.481746e-03	k: 7079	n:4890000
SFPQ   4890000 perm   10624 sec   (460 perm/sec)   p_kst 1.447648e-03   p_cons 2.842536e-05   p_joint 2.147239e-05

Joint ci ratio: 3.789565e-01	ci left: 1.771108e-05	ci right 2.616401e-05	k: 106	n:4900000
Cons ci ratio: 3.312957e-01	ci left: 2.384772e-05	ci right 3.349435e-05	k: 139	n:4900000
KS ci ratio: 4.647501e-02	ci left: 1.416098e-03	ci right 1.483677e-03	k: 7103	n:4900000
SFPQ   4900000 perm   10668 sec   (459 perm/sec)   p_kst 1.449592e-03   p_cons 2.836735e-05   p_joint 2.163265e-05

Joint ci ratio: 3.789565e-01	ci left: 1.767501e-05	ci right 2.611072e-05	k: 106	n:4910000
Cons ci ratio: 3.312957e-01	ci left: 2.379915e-05	ci right 3.342614e-05	k: 139	n:4910000
KS ci ratio: 4.642929e-02	ci left: 1.416032e-03	ci right 1.483540e-03	k: 7117	n:4910000
SFPQ   4910000 perm   10709 sec   (459 perm/sec)   p_kst 1.449491e-03   p_cons 2.830957e-05   p_joint 2.158859e-05

Joint ci ratio: 3.789565e-01	ci left: 1.763908e-05	ci right 2.605765e-05	k: 106	n:4920000
Cons ci ratio: 3.312957e-01	ci left: 2.375078e-05	ci right 3.335820e-05	k: 139	n:4920000
KS ci ratio: 4.639673e-02	ci left: 1.415163e-03	ci right 1.482580e-03	k: 7127	n:4920000
SFPQ   4920000 perm   10750 sec   (458 perm/sec)   p_kst 1.448577e-03   p_cons 2.825203e-05   p_joint 2.154472e-05

Joint ci ratio: 3.789566e-01	ci left: 1.760330e-05	ci right 2.600480e-05	k: 106	n:4930000
Cons ci ratio: 3.312957e-01	ci left: 2.370260e-05	ci right 3.329054e-05	k: 139	n:4930000
KS ci ratio: 4.635773e-02	ci left: 1.414698e-03	ci right 1.482035e-03	k: 7139	n:4930000
SFPQ   4930000 perm   10792 sec   (457 perm/sec)   p_kst 1.448073e-03   p_cons 2.819473e-05   p_joint 2.150101e-05

Joint ci ratio: 3.789566e-01	ci left: 1.756767e-05	ci right 2.595216e-05	k: 106	n:4940000
Cons ci ratio: 3.312957e-01	ci left: 2.365462e-05	ci right 3.322315e-05	k: 139	n:4940000
KS ci ratio: 4.631560e-02	ci left: 1.414436e-03	ci right 1.481697e-03	k: 7152	n:4940000
SFPQ   4940000 perm   10833 sec   (456 perm/sec)   p_kst 1.447773e-03   p_cons 2.813765e-05   p_joint 2.145749e-05

Joint ci ratio: 3.789566e-01	ci left: 1.753218e-05	ci right 2.589973e-05	k: 106	n:4950000
Cons ci ratio: 3.312957e-01	ci left: 2.360684e-05	ci right 3.315603e-05	k: 139	n:4950000
KS ci ratio: 4.627034e-02	ci left: 1.414374e-03	ci right 1.481565e-03	k: 7166	n:4950000
SFPQ   4950000 perm   10875 sec   (455 perm/sec)   p_kst 1.447677e-03   p_cons 2.808081e-05   p_joint 2.141414e-05

Joint ci ratio: 3.789566e-01	ci left: 1.749683e-05	ci right 2.584751e-05	k: 106	n:4960000
Cons ci ratio: 3.301188e-01	ci left: 2.374412e-05	ci right 3.330747e-05	k: 140	n:4960000
KS ci ratio: 4.622199e-02	ci left: 1.414511e-03	ci right 1.481637e-03	k: 7181	n:4960000
SFPQ   4960000 perm   10917 sec   (454 perm/sec)   p_kst 1.447782e-03   p_cons 2.822581e-05   p_joint 2.137097e-05

Joint ci ratio: 3.789566e-01	ci left: 1.746162e-05	ci right 2.579551e-05	k: 106	n:4970000
Cons ci ratio: 3.301188e-01	ci left: 2.369634e-05	ci right 3.324046e-05	k: 140	n:4970000
KS ci ratio: 4.617380e-02	ci left: 1.414649e-03	ci right 1.481709e-03	k: 7196	n:4970000
SFPQ   4970000 perm   10959 sec   (454 perm/sec)   p_kst 1.447887e-03   p_cons 2.816901e-05   p_joint 2.132797e-05

Joint ci ratio: 3.789566e-01	ci left: 1.742656e-05	ci right 2.574371e-05	k: 106	n:4980000
Cons ci ratio: 3.301188e-01	ci left: 2.364876e-05	ci right 3.317371e-05	k: 140	n:4980000
KS ci ratio: 4.613536e-02	ci left: 1.414190e-03	ci right 1.481171e-03	k: 7208	n:4980000
SFPQ   4980000 perm   11000 sec   (453 perm/sec)   p_kst 1.447390e-03   p_cons 2.811245e-05   p_joint 2.128514e-05

Joint ci ratio: 3.789566e-01	ci left: 1.739164e-05	ci right 2.569212e-05	k: 106	n:4990000
Cons ci ratio: 3.301189e-01	ci left: 2.360137e-05	ci right 3.310723e-05	k: 140	n:4990000
KS ci ratio: 4.609702e-02	ci left: 1.413733e-03	ci right 1.480636e-03	k: 7220	n:4990000
SFPQ   4990000 perm   11043 sec   (452 perm/sec)   p_kst 1.446894e-03   p_cons 2.805611e-05   p_joint 2.124248e-05

Joint ci ratio: 3.289544e-01	ci left: 2.373762e-05	ci right 3.325750e-05	k: 141	n:5000000
Cons ci ratio: 3.520220e-01	ci left: 2.044505e-05	ci right 2.935121e-05	k: 123	n:5000000
KS ci ratio: 4.605559e-02	ci left: 1.413475e-03	ci right 1.480304e-03	k: 7233	n:5000000
SFPQ   5000000 perm   11084 sec   (451 perm/sec)   p_kst 1.446600e-03   p_cons 2.460000e-05   p_joint 2.820000e-05

Outputting figure to mutsig2_images.part000000000156/SFPQ.10_2164_5000000_0.0014466_2.46e-05_2.82e-05.png
                gene_name: SFPQ
               theta_stop: 0.35 
                    nperm: 5000000 
                     p_ks: 0.0014 
        ci_ks_bounds_left: 0.0014 
       ci_ks_bounds_right: 0.0015 
                   p_cons: 2.46e-05 
      ci_cons_bounds_left: 2.04e-05 
     ci_cons_bounds_right: 2.94e-05 
                  p_joint: 2.82e-05 
     ci_joint_bounds_left: 2.37e-05 
    ci_joint_bounds_right: 3.33e-05 

Current progress: 4 percent done.
SGCG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.709323e-02	ci left: 6.674321e-01	ci right 6.858649e-01	k: 6767	n:10000
Cons ci ratio: 6.962823e-03	ci left: 9.659399e-01	ci right 9.727830e-01	k: 9695	n:10000
KS ci ratio: 4.369047e-02	ci left: 4.361247e-01	ci right 4.557069e-01	k: 4459	n:10000
SGCG   10000 perm   2 sec   (5779 perm/sec)   p_kst 4.459000e-01   p_cons 9.695000e-01   p_joint 6.767000e-01

Outputting figure to mutsig2_images.part000000000156/SGCG.9_904_10000_0.4459_0.9695_0.6767.png
                gene_name: SGCG
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 6 percent done.
SGCZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.036364e-02	ci left: 4.754599e-01	ci right 4.951487e-01	k: 4853	n:10000
Cons ci ratio: 4.092516e-02	ci left: 4.685668e-01	ci right 4.882458e-01	k: 4784	n:10000
KS ci ratio: 5.581766e-02	ci left: 3.209831e-01	ci right 3.395159e-01	k: 3302	n:10000
SGCZ   10000 perm   2 sec   (5585 perm/sec)   p_kst 3.302000e-01   p_cons 4.784000e-01   p_joint 4.853000e-01

Outputting figure to mutsig2_images.part000000000156/SGCZ.9_971_10000_0.3302_0.4784_0.4853.png
                gene_name: SGCZ
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 9 percent done.
SFRS15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.661395e-02	ci left: 1.625864e-01	ci right 1.774064e-01	k: 1699	n:10000
Cons ci ratio: 1.581162e-01	ci left: 5.330545e-02	ci right 6.255418e-02	k: 578	n:10000
KS ci ratio: 5.010390e-02	ci left: 3.700748e-01	ci right 3.891954e-01	k: 3796	n:10000
SFRS15   10000 perm   2 sec   (4774 perm/sec)   p_kst 3.796000e-01   p_cons 5.780000e-02   p_joint 1.699000e-01

Joint ci ratio: 7.484844e-02	ci left: 1.160678e-01	ci right 1.251428e-01	k: 2411	n:20000
Cons ci ratio: 1.138568e-01	ci left: 5.275592e-02	ci right 5.917394e-02	k: 1118	n:20000
KS ci ratio: 3.514080e-02	ci left: 3.767535e-01	ci right 3.902803e-01	k: 7670	n:20000
SFRS15   20000 perm   5 sec   (4359 perm/sec)   p_kst 3.835000e-01   p_cons 5.590000e-02   p_joint 1.205500e-01

Joint ci ratio: 6.396217e-02	ci left: 1.076965e-01	ci right 1.148457e-01	k: 3337	n:30000
Cons ci ratio: 9.454075e-02	ci left: 5.163197e-02	ci right 5.678813e-02	k: 1625	n:30000
KS ci ratio: 2.867914e-02	ci left: 3.782253e-01	ci right 3.892639e-01	k: 11512	n:30000
SFRS15   30000 perm   7 sec   (4200 perm/sec)   p_kst 3.837333e-01   p_cons 5.416667e-02   p_joint 1.112333e-01

Outputting figure to mutsig2_images.part000000000156/SFRS15.8_3524_30000_0.38373_0.054167_0.11123.png
                gene_name: SFRS15
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 11 percent done.
SGSM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.889213e-02	ci left: 3.816178e-01	ci right 4.008456e-01	k: 3912	n:10000
Cons ci ratio: 1.479875e-02	ci left: 8.686652e-01	ci right 8.817153e-01	k: 8753	n:10000
KS ci ratio: 7.989902e-02	ci left: 1.861912e-01	ci right 2.017874e-01	k: 1939	n:10000
SGSM1   10000 perm   2 sec   (5065 perm/sec)   p_kst 1.939000e-01   p_cons 8.753000e-01   p_joint 3.912000e-01

Outputting figure to mutsig2_images.part000000000156/SGSM1.8_3551_10000_0.1939_0.8753_0.3912.png
                gene_name: SGSM1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 13 percent done.
SF3B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.571844e-02	ci left: 4.138887e-01	ci right 4.333558e-01	k: 4236	n:10000
Cons ci ratio: 7.210993e-02	ci left: 2.198072e-01	ci right 2.363514e-01	k: 2280	n:10000
KS ci ratio: 3.702067e-02	ci left: 5.186590e-01	ci right 5.383244e-01	k: 5285	n:10000
SF3B3   10000 perm   2 sec   (4918 perm/sec)   p_kst 5.285000e-01   p_cons 2.280000e-01   p_joint 4.236000e-01

Outputting figure to mutsig2_images.part000000000156/SF3B3.7_3754_10000_0.5285_0.228_0.4236.png
                gene_name: SF3B3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 15 percent done.
SFI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.696667e-02	ci left: 2.465785e-01	ci right 2.637644e-01	k: 2551	n:10000
Cons ci ratio: 4.838285e-02	ci left: 3.865951e-01	ci right 4.058654e-01	k: 3962	n:10000
KS ci ratio: 1.251018e-01	ci left: 8.378084e-02	ci right 9.505967e-02	k: 893	n:10000
SFI1   10000 perm   2 sec   (4700 perm/sec)   p_kst 8.930000e-02   p_cons 3.962000e-01   p_joint 2.551000e-01

Joint ci ratio: 5.112789e-02	ci left: 2.213086e-01	ci right 2.329708e-01	k: 4542	n:20000
Cons ci ratio: 3.451735e-02	ci left: 3.852252e-01	ci right 3.988062e-01	k: 7840	n:20000
KS ci ratio: 8.878972e-02	ci left: 8.484372e-02	ci right 9.277630e-02	k: 1775	n:20000
SFI1   20000 perm   5 sec   (4328 perm/sec)   p_kst 8.875000e-02   p_cons 3.920000e-01   p_joint 2.271000e-01

Outputting figure to mutsig2_images.part000000000156/SFI1.7_3857_20000_0.08875_0.392_0.2271.png
                gene_name: SFI1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 17 percent done.
SGK223
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.800946e-02	ci left: 1.311004e-01	ci right 1.447113e-01	k: 1378	n:10000
Cons ci ratio: 4.312913e-02	ci left: 4.425100e-01	ci right 4.621178e-01	k: 4523	n:10000
KS ci ratio: 1.514271e-01	ci left: 5.802650e-02	ci right 6.763012e-02	k: 627	n:10000
SGK223   10000 perm   2 sec   (4423 perm/sec)   p_kst 6.270000e-02   p_cons 4.523000e-01   p_joint 1.378000e-01

Joint ci ratio: 7.420271e-02	ci left: 1.178879e-01	ci right 1.270222e-01	k: 2448	n:20000
Cons ci ratio: 2.920004e-02	ci left: 4.670091e-01	ci right 4.808985e-01	k: 9479	n:20000
KS ci ratio: 1.058244e-01	ci left: 6.079280e-02	ci right 6.763456e-02	k: 1283	n:20000
SGK223   20000 perm   5 sec   (3717 perm/sec)   p_kst 6.415000e-02   p_cons 4.739500e-01   p_joint 1.224000e-01

Joint ci ratio: 6.399453e-02	ci left: 1.075979e-01	ci right 1.147443e-01	k: 3334	n:30000
Cons ci ratio: 2.379700e-02	ci left: 4.692352e-01	ci right 4.805697e-01	k: 14247	n:30000
KS ci ratio: 8.705978e-02	ci left: 6.053764e-02	ci right 6.608064e-02	k: 1898	n:30000
SGK223   30000 perm   8 sec   (3623 perm/sec)   p_kst 6.326667e-02   p_cons 4.749000e-01   p_joint 1.111333e-01

Outputting figure to mutsig2_images.part000000000156/SGK223.7_4229_30000_0.063267_0.4749_0.11113.png
                gene_name: SGK223
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.063 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 19 percent done.
SGOL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.321626e-02	ci left: 4.415122e-01	ci right 4.611162e-01	k: 4513	n:10000
Cons ci ratio: 4.809090e-02	ci left: 3.894823e-01	ci right 4.087765e-01	k: 3991	n:10000
KS ci ratio: 5.002953e-02	ci left: 3.707712e-01	ci right 3.898986e-01	k: 3803	n:10000
SGOL2   10000 perm   2 sec   (4627 perm/sec)   p_kst 3.803000e-01   p_cons 3.991000e-01   p_joint 4.513000e-01

Outputting figure to mutsig2_images.part000000000156/SGOL2.7_3838_10000_0.3803_0.3991_0.4513.png
                gene_name: SGOL2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 21 percent done.
SFMBT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.107132e-02	ci left: 6.044766e-01	ci right 6.236569e-01	k: 6141	n:10000
Cons ci ratio: 3.582708e-02	ci left: 5.349777e-01	ci right 5.545962e-01	k: 5448	n:10000
KS ci ratio: 4.660958e-02	ci left: 4.045217e-01	ci right 4.239283e-01	k: 4142	n:10000
SFMBT1   10000 perm   2 sec   (5507 perm/sec)   p_kst 4.142000e-01   p_cons 5.448000e-01   p_joint 6.141000e-01

Outputting figure to mutsig2_images.part000000000156/SFMBT1.6_2681_10000_0.4142_0.5448_0.6141.png
                gene_name: SFMBT1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 23 percent done.
SGMS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.677321e-02	ci left: 4.028281e-01	ci right 4.222229e-01	k: 4125	n:10000
Cons ci ratio: 3.927257e-02	ci left: 4.891517e-01	ci right 5.088489e-01	k: 4990	n:10000
KS ci ratio: 7.468054e-02	ci left: 2.078695e-01	ci right 2.240963e-01	k: 2159	n:10000
SGMS2   10000 perm   2 sec   (5592 perm/sec)   p_kst 2.159000e-01   p_cons 4.990000e-01   p_joint 4.125000e-01

Outputting figure to mutsig2_images.part000000000156/SGMS2.6_1118_10000_0.2159_0.499_0.4125.png
                gene_name: SGMS2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 26 percent done.
SFRS18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.904114e-02	ci left: 6.361335e-01	ci right 6.549816e-01	k: 6456	n:10000
Cons ci ratio: 1.552184e-02	ci left: 8.576357e-01	ci right 8.711513e-01	k: 8645	n:10000
KS ci ratio: 4.209097e-02	ci left: 4.545866e-01	ci right 4.742341e-01	k: 4644	n:10000
SFRS18   10000 perm   2 sec   (5125 perm/sec)   p_kst 4.644000e-01   p_cons 8.645000e-01   p_joint 6.456000e-01

Outputting figure to mutsig2_images.part000000000156/SFRS18.5_2458_10000_0.4644_0.8645_0.6456.png
                gene_name: SFRS18
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 28 percent done.
SGK2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.550197e-02	ci left: 8.579419e-01	ci right 8.714449e-01	k: 8648	n:10000
Cons ci ratio: 1.285909e-02	ci left: 8.969288e-01	ci right 9.086354e-01	k: 9029	n:10000
KS ci ratio: 2.480242e-02	ci left: 7.051326e-01	ci right 7.229426e-01	k: 7141	n:10000
SGK2   10000 perm   2 sec   (6103 perm/sec)   p_kst 7.141000e-01   p_cons 9.029000e-01   p_joint 8.648000e-01

Outputting figure to mutsig2_images.part000000000156/SGK2.4_1332_10000_0.7141_0.9029_0.8648.png
                gene_name: SGK2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 30 percent done.
SF3B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.438552e-02	ci left: 3.325008e-01	ci right 3.511914e-01	k: 3418	n:10000
Cons ci ratio: 4.029907e-02	ci left: 4.762592e-01	ci right 4.959489e-01	k: 4861	n:10000
KS ci ratio: 7.258412e-02	ci left: 2.175373e-01	ci right 2.340227e-01	k: 2257	n:10000
SF3B4   10000 perm   2 sec   (6069 perm/sec)   p_kst 2.257000e-01   p_cons 4.861000e-01   p_joint 3.418000e-01

Outputting figure to mutsig2_images.part000000000156/SF3B4.4_1299_10000_0.2257_0.4861_0.3418.png
                gene_name: SF3B4
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 32 percent done.
SFRP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.812695e-02	ci left: 6.507205e-01	ci right 6.693861e-01	k: 6601	n:10000
Cons ci ratio: 4.380558e-02	ci left: 4.348278e-01	ci right 4.544044e-01	k: 4446	n:10000
KS ci ratio: 4.293816e-02	ci left: 4.447053e-01	ci right 4.643212e-01	k: 4545	n:10000
SFRP4   10000 perm   2 sec   (5832 perm/sec)   p_kst 4.545000e-01   p_cons 4.446000e-01   p_joint 6.601000e-01

Outputting figure to mutsig2_images.part000000000156/SFRP4.4_1065_10000_0.4545_0.4446_0.6601.png
                gene_name: SFRP4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 34 percent done.
SFTPD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.603451e-02	ci left: 8.496789e-01	ci right 8.635127e-01	k: 8567	n:10000
KS ci ratio: 2.417799e-02	ci left: 7.155281e-01	ci right 7.331411e-01	k: 7244	n:10000
SFTPD   10000 perm   2 sec   (6297 perm/sec)   p_kst 7.244000e-01   p_cons 8.567000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SFTPD.4_1156_10000_0.7244_0.8567_1.png
                gene_name: SFTPD
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 36 percent done.
SFXN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.931867e-02	ci left: 7.966903e-01	ci right 8.123319e-01	k: 8046	n:10000
Cons ci ratio: 4.350532e-02	ci left: 4.382197e-01	ci right 4.578106e-01	k: 4480	n:10000
KS ci ratio: 2.166601e-02	ci left: 7.575753e-01	ci right 7.742695e-01	k: 7660	n:10000
SFXN2   10000 perm   2 sec   (6047 perm/sec)   p_kst 7.660000e-01   p_cons 4.480000e-01   p_joint 8.046000e-01

Outputting figure to mutsig2_images.part000000000156/SFXN2.4_1013_10000_0.766_0.448_0.8046.png
                gene_name: SFXN2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 38 percent done.
SGCB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.966014e-02	ci left: 3.742535e-01	ci right 3.934142e-01	k: 3838	n:10000
Cons ci ratio: 2.662392e-02	ci left: 6.750875e-01	ci right 6.934051e-01	k: 6843	n:10000
KS ci ratio: 6.285915e-02	ci left: 2.711159e-01	ci right 2.888125e-01	k: 2799	n:10000
SGCB   10000 perm   2 sec   (6479 perm/sec)   p_kst 2.799000e-01   p_cons 6.843000e-01   p_joint 3.838000e-01

Outputting figure to mutsig2_images.part000000000156/SGCB.4_981_10000_0.2799_0.6843_0.3838.png
                gene_name: SGCB
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 40 percent done.
SGCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.938832e-02	ci left: 3.768407e-01	ci right 3.960255e-01	k: 3864	n:10000
Cons ci ratio: 4.788103e-02	ci left: 3.915733e-01	ci right 4.108842e-01	k: 4012	n:10000
KS ci ratio: 6.767870e-02	ci left: 2.426241e-01	ci right 2.597210e-01	k: 2511	n:10000
SGCE   10000 perm   2 sec   (5754 perm/sec)   p_kst 2.511000e-01   p_cons 4.012000e-01   p_joint 3.864000e-01

Outputting figure to mutsig2_images.part000000000156/SGCE.4_1510_10000_0.2511_0.4012_0.3864.png
                gene_name: SGCE
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 43 percent done.
SGIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.846994e-02	ci left: 1.567914e-01	ci right 1.714049e-01	k: 1640	n:10000
Cons ci ratio: 5.422880e-02	ci left: 3.337920e-01	ci right 3.524995e-01	k: 3431	n:10000
KS ci ratio: 1.029581e-01	ci left: 1.200443e-01	ci right 1.331741e-01	k: 1265	n:10000
SGIP1   10000 perm   2 sec   (5704 perm/sec)   p_kst 1.265000e-01   p_cons 3.431000e-01   p_joint 1.640000e-01

Joint ci ratio: 6.245623e-02	ci left: 1.593861e-01	ci right 1.697116e-01	k: 3290	n:20000
Cons ci ratio: 3.824790e-02	ci left: 3.377130e-01	ci right 3.509322e-01	k: 6886	n:20000
KS ci ratio: 7.159459e-02	ci left: 1.256636e-01	ci right 1.350442e-01	k: 2606	n:20000
SGIP1   20000 perm   4 sec   (5148 perm/sec)   p_kst 1.303000e-01   p_cons 3.443000e-01   p_joint 1.645000e-01

Outputting figure to mutsig2_images.part000000000156/SGIP1.4_2587_20000_0.1303_0.3443_0.1645.png
                gene_name: SGIP1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 45 percent done.
SGK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.805805e-02	ci left: 6.518275e-01	ci right 6.704785e-01	k: 6612	n:10000
Cons ci ratio: 4.295548e-02	ci left: 4.445057e-01	ci right 4.641209e-01	k: 4543	n:10000
KS ci ratio: 5.236922e-02	ci left: 3.495901e-01	ci right 3.684921e-01	k: 3590	n:10000
SGK1   10000 perm   2 sec   (5949 perm/sec)   p_kst 3.590000e-01   p_cons 4.543000e-01   p_joint 6.612000e-01

Outputting figure to mutsig2_images.part000000000156/SGK1.4_2003_10000_0.359_0.4543_0.6612.png
                gene_name: SGK1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 47 percent done.
SGOL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.164983e-01	ci left: 9.574517e-02	ci right 1.076880e-01	k: 1016	n:10000
Cons ci ratio: 1.857837e-02	ci left: 8.088732e-01	ci right 8.241419e-01	k: 8166	n:10000
KS ci ratio: 1.927855e-01	ci left: 3.586235e-02	ci right 4.360871e-02	k: 396	n:10000
SGOL1   10000 perm   2 sec   (5431 perm/sec)   p_kst 3.960000e-02   p_cons 8.166000e-01   p_joint 1.016000e-01

Joint ci ratio: 9.758882e-02	ci left: 7.099564e-02	ci right 7.832859e-02	k: 1492	n:20000
Cons ci ratio: 1.326130e-02	ci left: 8.082841e-01	ci right 8.191245e-01	k: 16275	n:20000
KS ci ratio: 1.351748e-01	ci left: 3.761647e-02	ci right 4.311819e-02	k: 806	n:20000
SGOL1   20000 perm   4 sec   (4810 perm/sec)   p_kst 4.030000e-02   p_cons 8.137500e-01   p_joint 7.460000e-02

Joint ci ratio: 6.543842e-02	ci left: 1.033265e-01	ci right 1.103498e-01	k: 3204	n:30000
Cons ci ratio: 1.093412e-02	ci left: 8.062876e-01	ci right 8.151854e-01	k: 24323	n:30000
KS ci ratio: 1.119459e-01	ci left: 3.706442e-02	ci right 4.149204e-02	k: 1177	n:30000
SGOL1   30000 perm   6 sec   (4660 perm/sec)   p_kst 3.923333e-02   p_cons 8.107667e-01   p_joint 1.068000e-01

Joint ci ratio: 7.080349e-02	ci left: 6.864941e-02	ci right 7.371306e-02	k: 2846	n:40000
Cons ci ratio: 9.504398e-03	ci left: 8.057427e-01	ci right 8.134623e-01	k: 32385	n:40000
KS ci ratio: 9.674552e-02	ci left: 3.751450e-02	ci right 4.135273e-02	k: 1576	n:40000
SGOL1   40000 perm   9 sec   (4575 perm/sec)   p_kst 3.940000e-02   p_cons 8.096250e-01   p_joint 7.115000e-02

Outputting figure to mutsig2_images.part000000000156/SGOL1.4_1738_40000_0.0394_0.80963_0.07115.png
                gene_name: SGOL1
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.074 

Current progress: 49 percent done.
SGPP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.761639e-02	ci left: 8.245259e-01	ci right 8.392802e-01	k: 8320	n:10000
KS ci ratio: 3.003833e-02	ci left: 6.204504e-01	ci right 6.394738e-01	k: 6300	n:10000
SGPP2   10000 perm   2 sec   (6005 perm/sec)   p_kst 6.300000e-01   p_cons 8.320000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SGPP2.4_1220_10000_0.63_0.832_1.png
                gene_name: SGPP2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
SH2D4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.997850e-02	ci left: 2.902347e-01	ci right 3.082824e-01	k: 2992	n:10000
KS ci ratio: 1.407139e-02	ci left: 8.795059e-01	ci right 8.920683e-01	k: 8859	n:10000
SH2D4A   10000 perm   2 sec   (5153 perm/sec)   p_kst 8.859000e-01   p_cons 2.992000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SH2D4A.4_1451_10000_0.8859_0.2992_1.png
                gene_name: SH2D4A
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
SFRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.206455e-02	ci left: 7.508973e-01	ci right 7.677513e-01	k: 7594	n:10000
KS ci ratio: 2.872461e-02	ci left: 6.411625e-01	ci right 6.599498e-01	k: 6506	n:10000
SFRP1   10000 perm   2 sec   (5889 perm/sec)   p_kst 6.506000e-01   p_cons 7.594000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SFRP1.3_957_10000_0.6506_0.7594_1.png
                gene_name: SFRP1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
SFRP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.880677e-02	ci left: 6.398548e-01	ci right 6.586581e-01	k: 6493	n:10000
Cons ci ratio: 4.729818e-02	ci left: 3.974490e-01	ci right 4.168051e-01	k: 4071	n:10000
KS ci ratio: 3.240467e-02	ci left: 5.842987e-01	ci right 6.036465e-01	k: 5940	n:10000
SFRP2   10000 perm   2 sec   (6402 perm/sec)   p_kst 5.940000e-01   p_cons 4.071000e-01   p_joint 6.493000e-01

Outputting figure to mutsig2_images.part000000000156/SFRP2.3_900_10000_0.594_0.4071_0.6493.png
                gene_name: SFRP2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 57 percent done.
SFRS2IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.874991e-02	ci left: 4.958504e-01	ci right 5.155463e-01	k: 5057	n:10000
Cons ci ratio: 1.806180e-02	ci left: 8.173068e-01	ci right 8.323035e-01	k: 8249	n:10000
KS ci ratio: 6.010744e-02	ci left: 2.893427e-01	ci right 3.073749e-01	k: 2983	n:10000
SFRS2IP   10000 perm   2 sec   (4589 perm/sec)   p_kst 2.983000e-01   p_cons 8.249000e-01   p_joint 5.057000e-01

Outputting figure to mutsig2_images.part000000000156/SFRS2IP.3_4448_10000_0.2983_0.8249_0.5057.png
                gene_name: SFRS2IP
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 60 percent done.
SFTPB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.394432e-01	ci left: 2.296967e-02	ci right 2.931046e-02	k: 260	n:10000
Cons ci ratio: 2.902845e-02	ci left: 6.363347e-01	ci right 6.551803e-01	k: 6458	n:10000
KS ci ratio: 4.284655e-01	ci left: 6.526864e-03	ci right 1.016828e-02	k: 82	n:10000
SFTPB   10000 perm   2 sec   (5837 perm/sec)   p_kst 8.200000e-03   p_cons 6.458000e-01   p_joint 2.600000e-02

Joint ci ratio: 1.628626e-01	ci left: 2.585348e-02	ci right 3.048506e-02	k: 562	n:20000
Cons ci ratio: 2.141477e-02	ci left: 6.194519e-01	ci right 6.329114e-01	k: 12524	n:20000
KS ci ratio: 2.868611e-01	ci left: 7.923549e-03	ci right 1.062202e-02	k: 184	n:20000
SFTPB   20000 perm   4 sec   (5306 perm/sec)   p_kst 9.200000e-03   p_cons 6.262000e-01   p_joint 2.810000e-02

Joint ci ratio: 1.454663e-01	ci left: 2.191185e-02	ci right 2.538125e-02	k: 708	n:30000
Cons ci ratio: 1.740081e-02	ci left: 6.229698e-01	ci right 6.339387e-01	k: 18854	n:30000
KS ci ratio: 2.439484e-01	ci left: 7.492322e-03	ci right 9.604510e-03	k: 255	n:30000
SFTPB   30000 perm   6 sec   (5162 perm/sec)   p_kst 8.500000e-03   p_cons 6.284667e-01   p_joint 2.360000e-02

Joint ci ratio: 1.297037e-01	ci left: 2.087524e-02	ci right 2.379468e-02	k: 892	n:40000
Cons ci ratio: 1.498481e-02	ci left: 6.263496e-01	ci right 6.358313e-01	k: 25244	n:40000
KS ci ratio: 2.086115e-01	ci left: 7.836928e-03	ci right 9.685449e-03	k: 349	n:40000
SFTPB   40000 perm   8 sec   (4868 perm/sec)   p_kst 8.725000e-03   p_cons 6.311000e-01   p_joint 2.230000e-02

Joint ci ratio: 1.031746e-01	ci left: 2.661043e-02	ci right 2.952471e-02	k: 1402	n:50000
Cons ci ratio: 1.335916e-02	ci left: 6.283768e-01	ci right 6.368478e-01	k: 31631	n:50000
KS ci ratio: 1.852053e-01	ci left: 8.057227e-03	ci right 9.720544e-03	k: 443	n:50000
SFTPB   50000 perm   10 sec   (4776 perm/sec)   p_kst 8.860000e-03   p_cons 6.326200e-01   p_joint 2.804000e-02

Joint ci ratio: 8.267334e-02	ci left: 3.462154e-02	ci right 3.762354e-02	k: 2166	n:60000
Cons ci ratio: 1.219051e-02	ci left: 6.289283e-01	ci right 6.366589e-01	k: 37968	n:60000
KS ci ratio: 1.687177e-01	ci left: 8.164001e-03	ci right 9.684071e-03	k: 534	n:60000
SFTPB   60000 perm   13 sec   (4703 perm/sec)   p_kst 8.900000e-03   p_cons 6.328000e-01   p_joint 3.610000e-02

Joint ci ratio: 7.282801e-02	ci left: 3.829360e-02	ci right 4.120185e-02	k: 2781	n:70000
Cons ci ratio: 1.127549e-02	ci left: 6.296602e-01	ci right 6.368145e-01	k: 44327	n:70000
KS ci ratio: 1.594790e-01	ci left: 7.874377e-03	ci right 9.252539e-03	k: 598	n:70000
SFTPB   70000 perm   15 sec   (4634 perm/sec)   p_kst 8.542857e-03   p_cons 6.332429e-01   p_joint 3.972857e-02

Joint ci ratio: 6.855703e-02	ci left: 3.791484e-02	ci right 4.061870e-02	k: 3140	n:80000
Cons ci ratio: 1.050939e-02	ci left: 6.315652e-01	ci right 6.382501e-01	k: 50793	n:80000
KS ci ratio: 1.494624e-01	ci left: 7.887511e-03	ci right 9.173512e-03	k: 681	n:80000
SFTPB   80000 perm   18 sec   (4539 perm/sec)   p_kst 8.512500e-03   p_cons 6.349125e-01   p_joint 3.925000e-02

Joint ci ratio: 7.279851e-02	ci left: 3.007372e-02	ci right 3.235662e-02	k: 2808	n:90000
Cons ci ratio: 9.899134e-03	ci left: 6.321899e-01	ci right 6.384903e-01	k: 57181	n:90000
KS ci ratio: 1.433125e-01	ci left: 7.653307e-03	ci right 8.845381e-03	k: 741	n:90000
SFTPB   90000 perm   20 sec   (4466 perm/sec)   p_kst 8.233333e-03   p_cons 6.353444e-01   p_joint 3.120000e-02

Joint ci ratio: 7.552888e-02	ci left: 2.523840e-02	ci right 2.722921e-02	k: 2622	n:100000
Cons ci ratio: 9.396918e-03	ci left: 6.320673e-01	ci right 6.380448e-01	k: 63506	n:100000
KS ci ratio: 1.351706e-01	ci left: 7.775978e-03	ci right 8.912816e-03	k: 833	n:100000
SFTPB   100000 perm   23 sec   (4398 perm/sec)   p_kst 8.330000e-03   p_cons 6.350600e-01   p_joint 2.622000e-02

Joint ci ratio: 7.209487e-02	ci left: 2.522831e-02	ci right 2.712405e-02	k: 2878	n:110000
Cons ci ratio: 8.969390e-03	ci left: 6.317007e-01	ci right 6.374013e-01	k: 69801	n:110000
KS ci ratio: 1.298398e-01	ci left: 7.684320e-03	ci right 8.760033e-03	k: 903	n:110000
SFTPB   110000 perm   25 sec   (4324 perm/sec)   p_kst 8.209091e-03   p_cons 6.345545e-01   p_joint 2.616364e-02

Joint ci ratio: 8.725334e-02	ci left: 1.581940e-02	ci right 1.727077e-02	k: 1984	n:120000
Cons ci ratio: 8.594880e-03	ci left: 6.314257e-01	ci right 6.368845e-01	k: 76099	n:120000
KS ci ratio: 1.232569e-01	ci left: 7.842893e-03	ci right 8.881077e-03	k: 1002	n:120000
SFTPB   120000 perm   28 sec   (4217 perm/sec)   p_kst 8.350000e-03   p_cons 6.341583e-01   p_joint 1.653333e-02

Joint ci ratio: 6.761924e-02	ci left: 2.434720e-02	ci right 2.605868e-02	k: 3275	n:130000
Cons ci ratio: 8.260380e-03	ci left: 6.313823e-01	ci right 6.366271e-01	k: 82421	n:130000
KS ci ratio: 1.173685e-01	ci left: 8.008105e-03	ci right 9.014003e-03	k: 1105	n:130000
SFTPB   130000 perm   31 sec   (4153 perm/sec)   p_kst 8.500000e-03   p_cons 6.340077e-01   p_joint 2.519231e-02

Joint ci ratio: 6.616692e-02	ci left: 2.364729e-02	ci right 2.527249e-02	k: 3423	n:140000
Cons ci ratio: 7.966654e-03	ci left: 6.310841e-01	ci right 6.361389e-01	k: 88706	n:140000
KS ci ratio: 1.128641e-01	ci left: 8.060459e-03	ci right 9.031489e-03	k: 1195	n:140000
SFTPB   140000 perm   34 sec   (4095 perm/sec)   p_kst 8.535714e-03   p_cons 6.336143e-01   p_joint 2.445000e-02

Joint ci ratio: 6.367973e-02	ci left: 2.385478e-02	ci right 2.543033e-02	k: 3695	n:150000
Cons ci ratio: 7.692008e-03	ci left: 6.314429e-01	ci right 6.363253e-01	k: 95083	n:150000
KS ci ratio: 1.080393e-01	ci left: 8.229730e-03	ci right 9.176074e-03	k: 1304	n:150000
SFTPB   150000 perm   37 sec   (4037 perm/sec)   p_kst 8.693333e-03   p_cons 6.338867e-01   p_joint 2.463333e-02

Joint ci ratio: 6.021976e-02	ci left: 2.502250e-02	ci right 2.658225e-02	k: 4127	n:160000
Cons ci ratio: 7.448446e-03	ci left: 6.314777e-01	ci right 6.362050e-01	k: 101415	n:160000
KS ci ratio: 1.049515e-01	ci left: 8.189878e-03	ci right 9.103060e-03	k: 1382	n:160000
SFTPB   160000 perm   40 sec   (3981 perm/sec)   p_kst 8.637500e-03   p_cons 6.338438e-01   p_joint 2.579375e-02

Joint ci ratio: 6.172268e-02	ci left: 2.246063e-02	ci right 2.389687e-02	k: 3939	n:170000
Cons ci ratio: 7.220695e-03	ci left: 6.318934e-01	ci right 6.364785e-01	k: 107812	n:170000
KS ci ratio: 1.016588e-01	ci left: 8.229594e-03	ci right 9.116696e-03	k: 1473	n:170000
SFTPB   170000 perm   43 sec   (3925 perm/sec)   p_kst 8.664706e-03   p_cons 6.341882e-01   p_joint 2.317059e-02

Joint ci ratio: 5.399876e-02	ci left: 2.767582e-02	ci right 2.921720e-02	k: 5119	n:180000
Cons ci ratio: 7.020692e-03	ci left: 6.317308e-01	ci right 6.361871e-01	k: 114113	n:180000
KS ci ratio: 9.894522e-02	ci left: 8.216519e-03	ci right 9.077196e-03	k: 1555	n:180000
SFTPB   180000 perm   47 sec   (3855 perm/sec)   p_kst 8.638889e-03   p_cons 6.339611e-01   p_joint 2.843889e-02

Outputting figure to mutsig2_images.part000000000156/SFTPB.3_1222_180000_0.0086389_0.63396_0.028439.png
                gene_name: SFTPB
               theta_stop: 0.099 
                    nperm: 180000 
                     p_ks: 0.0086 
        ci_ks_bounds_left: 0.0082 
       ci_ks_bounds_right: 0.0091 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.029 

Current progress: 62 percent done.
SGCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.608058e-02	ci left: 5.314728e-01	ci right 5.511031e-01	k: 5413	n:10000
KS ci ratio: 5.598589e-03	ci left: 9.771688e-01	ci right 9.827467e-01	k: 9801	n:10000
SGCD   10000 perm   2 sec   (6381 perm/sec)   p_kst 9.801000e-01   p_cons 5.413000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SGCD.3_977_10000_0.9801_0.5413_1.png
                gene_name: SGCD
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
SGK269
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.118695e-02	ci left: 2.820102e-01	ci right 2.999117e-01	k: 2909	n:10000
Cons ci ratio: 1.244153e-01	ci left: 8.465526e-02	ci right 9.598471e-02	k: 902	n:10000
KS ci ratio: 3.433571e-02	ci left: 5.560174e-01	ci right 5.755442e-01	k: 5658	n:10000
SGK269   10000 perm   2 sec   (4742 perm/sec)   p_kst 5.658000e-01   p_cons 9.020000e-02   p_joint 2.909000e-01

Joint ci ratio: 4.872424e-02	ci left: 2.385064e-01	ci right 2.504680e-01	k: 4889	n:20000
Cons ci ratio: 8.973561e-02	ci left: 8.317825e-02	ci right 9.104227e-02	k: 1741	n:20000
KS ci ratio: 2.455839e-02	ci left: 5.532876e-01	ci right 5.670949e-01	k: 11204	n:20000
SGK269   20000 perm   5 sec   (4280 perm/sec)   p_kst 5.602000e-01   p_cons 8.705000e-02   p_joint 2.444500e-01

Outputting figure to mutsig2_images.part000000000156/SGK269.3_5257_20000_0.5602_0.08705_0.24445.png
                gene_name: SGK269
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 66 percent done.
SGMS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.878780e-02	ci left: 6.401566e-01	ci right 6.589562e-01	k: 6496	n:10000
Cons ci ratio: 3.616056e-02	ci left: 5.303714e-01	ci right 5.500052e-01	k: 5402	n:10000
KS ci ratio: 2.599129e-02	ci left: 6.854671e-01	ci right 7.036194e-01	k: 6946	n:10000
SGMS1   10000 perm   2 sec   (5320 perm/sec)   p_kst 6.946000e-01   p_cons 5.402000e-01   p_joint 6.496000e-01

Outputting figure to mutsig2_images.part000000000156/SGMS1.3_1262_10000_0.6946_0.5402_0.6496.png
                gene_name: SGMS1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 68 percent done.
SGPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.155970e-02	ci left: 2.795337e-01	ci right 2.973897e-01	k: 2884	n:10000
KS ci ratio: 1.437565e-02	ci left: 8.750041e-01	ci right 8.877728e-01	k: 8815	n:10000
SGPL1   10000 perm   2 sec   (5212 perm/sec)   p_kst 8.815000e-01   p_cons 2.884000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SGPL1.3_1763_10000_0.8815_0.2884_1.png
                gene_name: SGPL1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
SH2D3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.998574e-02	ci left: 7.856340e-01	ci right 8.015946e-01	k: 7937	n:10000
Cons ci ratio: 3.364216e-02	ci left: 5.660425e-01	ci right 5.855133e-01	k: 5758	n:10000
KS ci ratio: 3.969896e-02	ci left: 4.837540e-01	ci right 5.034497e-01	k: 4936	n:10000
SH2D3A   10000 perm   2 sec   (5437 perm/sec)   p_kst 4.936000e-01   p_cons 5.758000e-01   p_joint 7.937000e-01

Outputting figure to mutsig2_images.part000000000156/SH2D3A.3_1767_10000_0.4936_0.5758_0.7937.png
                gene_name: SH2D3A
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 72 percent done.
SH3BGR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.880739e-02	ci left: 8.051156e-01	ci right 8.205017e-01	k: 8129	n:10000
Cons ci ratio: 3.682802e-02	ci left: 5.212613e-01	ci right 5.409206e-01	k: 5311	n:10000
KS ci ratio: 3.391144e-02	ci left: 5.621323e-01	ci right 5.816258e-01	k: 5719	n:10000
SH3BGR   10000 perm   2 sec   (5767 perm/sec)   p_kst 5.719000e-01   p_cons 5.311000e-01   p_joint 8.129000e-01

Outputting figure to mutsig2_images.part000000000156/SH3BGR.3_744_10000_0.5719_0.5311_0.8129.png
                gene_name: SH3BGR
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 74 percent done.
SF3B2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.347064e-02	ci left: 7.273436e-01	ci right 7.447187e-01	k: 7361	n:10000
Cons ci ratio: 4.950306e-02	ci left: 3.757461e-01	ci right 3.949208e-01	k: 3853	n:10000
KS ci ratio: 6.899925e-02	ci left: 2.355088e-01	ci right 2.524406e-01	k: 2439	n:10000
SF3B2   10000 perm   2 sec   (5246 perm/sec)   p_kst 2.439000e-01   p_cons 3.853000e-01   p_joint 7.361000e-01

Outputting figure to mutsig2_images.part000000000156/SF3B2.2_2776_10000_0.2439_0.3853_0.7361.png
                gene_name: SF3B2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 77 percent done.
SFRS14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.892670e-02	ci left: 1.289466e-01	ci right 1.424664e-01	k: 1356	n:10000
Cons ci ratio: 1.040429e-01	ci left: 1.177960e-01	ci right 1.308238e-01	k: 1242	n:10000
KS ci ratio: 8.062157e-02	ci left: 1.834349e-01	ci right 1.989455e-01	k: 1911	n:10000
SFRS14   10000 perm   2 sec   (5050 perm/sec)   p_kst 1.911000e-01   p_cons 1.242000e-01   p_joint 1.356000e-01

Joint ci ratio: 8.073127e-02	ci left: 1.011769e-01	ci right 1.097382e-01	k: 2108	n:20000
Cons ci ratio: 7.338550e-02	ci left: 1.202495e-01	ci right 1.294599e-01	k: 2496	n:20000
KS ci ratio: 5.751139e-02	ci left: 1.830507e-01	ci right 1.939400e-01	k: 3769	n:20000
SFRS14   20000 perm   4 sec   (4826 perm/sec)   p_kst 1.884500e-01   p_cons 1.248000e-01   p_joint 1.054000e-01

Outputting figure to mutsig2_images.part000000000156/SFRS14.2_3285_20000_0.18845_0.1248_0.1054.png
                gene_name: SFRS14
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 79 percent done.
SFRS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.465098e-01	ci left: 6.188659e-02	ci right 7.176758e-02	k: 667	n:10000
Cons ci ratio: 1.039475e-01	ci left: 1.179914e-01	ci right 1.310282e-01	k: 1244	n:10000
KS ci ratio: 1.211259e-01	ci left: 8.902986e-02	ci right 1.006074e-01	k: 947	n:10000
SFRS4   10000 perm   2 sec   (4572 perm/sec)   p_kst 9.470000e-02   p_cons 1.244000e-01   p_joint 6.670000e-02

Joint ci ratio: 5.031872e-02	ci left: 2.269076e-01	ci right 2.386702e-01	k: 4655	n:20000
Cons ci ratio: 7.396201e-02	ci left: 1.185766e-01	ci right 1.277333e-01	k: 2462	n:20000
KS ci ratio: 8.582577e-02	ci left: 9.038200e-02	ci right 9.853634e-02	k: 1888	n:20000
SFRS4   20000 perm   4 sec   (4878 perm/sec)   p_kst 9.440000e-02   p_cons 1.231000e-01   p_joint 2.327500e-01

Outputting figure to mutsig2_images.part000000000156/SFRS4.2_1509_20000_0.0944_0.1231_0.23275.png
                gene_name: SFRS4
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 81 percent done.
SFT2D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.337419e-03	ci left: 9.526301e-01	ci right 9.607012e-01	k: 9568	n:10000
KS ci ratio: 8.770386e-02	ci left: 1.591483e-01	ci right 1.738466e-01	k: 1664	n:10000
SFT2D1   10000 perm   2 sec   (4651 perm/sec)   p_kst 1.664000e-01   p_cons 9.568000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SFT2D1.2_512_10000_0.1664_0.9568_1.png
                gene_name: SFT2D1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
SFXN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.003453e-02	ci left: 7.848229e-01	ci right 8.008061e-01	k: 7929	n:10000
Cons ci ratio: 2.103091e-02	ci left: 7.682051e-01	ci right 7.846336e-01	k: 7765	n:10000
KS ci ratio: 3.323762e-02	ci left: 5.719593e-01	ci right 5.913931e-01	k: 5817	n:10000
SFXN5   10000 perm   2 sec   (5230 perm/sec)   p_kst 5.817000e-01   p_cons 7.765000e-01   p_joint 7.929000e-01

Outputting figure to mutsig2_images.part000000000156/SFXN5.2_1079_10000_0.5817_0.7765_0.7929.png
                gene_name: SFXN5
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 85 percent done.
SGK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.544893e-02	ci left: 8.587584e-01	ci right 8.722279e-01	k: 8656	n:10000
KS ci ratio: 7.363547e-03	ci left: 9.622595e-01	ci right 9.694658e-01	k: 9660	n:10000
SGK3   10000 perm   2 sec   (6520 perm/sec)   p_kst 9.660000e-01   p_cons 8.656000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000156/SGK3.2_1555_10000_0.966_0.8656_1.png
                gene_name: SGK3
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
SGPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.696667e-02	ci left: 2.465785e-01	ci right 2.637644e-01	k: 2551	n:10000
Cons ci ratio: 4.852468e-02	ci left: 3.852013e-01	ci right 4.044600e-01	k: 3948	n:10000
KS ci ratio: 6.693146e-02	ci left: 2.467762e-01	ci right 2.639665e-01	k: 2553	n:10000
SGPP1   10000 perm   2 sec   (5214 perm/sec)   p_kst 2.553000e-01   p_cons 3.948000e-01   p_joint 2.551000e-01

Outputting figure to mutsig2_images.part000000000156/SGPP1.2_1338_10000_0.2553_0.3948_0.2551.png
                gene_name: SGPP1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 89 percent done.
SGTB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.132144e-02	ci left: 7.633448e-01	ci right 7.798966e-01	k: 7717	n:10000
Cons ci ratio: 2.261365e-02	ci left: 7.416944e-01	ci right 7.587596e-01	k: 7503	n:10000
KS ci ratio: 2.981327e-02	ci left: 6.239682e-01	ci right 6.429540e-01	k: 6335	n:10000
SGTB   10000 perm   2 sec   (6044 perm/sec)   p_kst 6.335000e-01   p_cons 7.503000e-01   p_joint 7.717000e-01

Outputting figure to mutsig2_images.part000000000156/SGTB.2_955_10000_0.6335_0.7503_0.7717.png
                gene_name: SGTB
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 91 percent done.
SH2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.412142e-02	ci left: 1.708424e-01	ci right 1.859454e-01	k: 1783	n:10000
Cons ci ratio: 1.014049e-01	ci left: 1.233692e-01	ci right 1.366472e-01	k: 1299	n:10000
KS ci ratio: 1.581162e-01	ci left: 5.330545e-02	ci right 6.255418e-02	k: 578	n:10000
SH2B1   10000 perm   2 sec   (5516 perm/sec)   p_kst 5.780000e-02   p_cons 1.299000e-01   p_joint 1.783000e-01

Joint ci ratio: 6.190544e-02	ci left: 1.618052e-01	ci right 1.721918e-01	k: 3339	n:20000
Cons ci ratio: 7.197603e-02	ci left: 1.244821e-01	ci right 1.338260e-01	k: 2582	n:20000
KS ci ratio: 1.110461e-01	ci left: 5.538421e-02	ci right 6.194483e-02	k: 1172	n:20000
SH2B1   20000 perm   4 sec   (4678 perm/sec)   p_kst 5.860000e-02   p_cons 1.291000e-01   p_joint 1.669500e-01

Joint ci ratio: 4.700416e-02	ci left: 1.837576e-01	ci right 1.926362e-01	k: 5645	n:30000
Cons ci ratio: 5.939952e-02	ci left: 1.229884e-01	ci right 1.305507e-01	k: 3802	n:30000
KS ci ratio: 8.960573e-02	ci left: 5.727341e-02	ci right 6.267886e-02	k: 1798	n:30000
SH2B1   30000 perm   6 sec   (4648 perm/sec)   p_kst 5.993333e-02   p_cons 1.267333e-01   p_joint 1.881667e-01

Outputting figure to mutsig2_images.part000000000156/SH2B1.2_2460_30000_0.059933_0.12673_0.18817.png
                gene_name: SH2B1
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 94 percent done.
SH2D1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.227413e-02	ci left: 2.190177e-01	ci right 2.355415e-01	k: 2272	n:10000
Cons ci ratio: 1.118988e-01	ci left: 1.031515e-01	ci right 1.154771e-01	k: 1092	n:10000
KS ci ratio: 8.964901e-02	ci left: 1.532571e-01	ci right 1.677413e-01	k: 1604	n:10000
SH2D1A   10000 perm   2 sec   (6044 perm/sec)   p_kst 1.604000e-01   p_cons 1.092000e-01   p_joint 2.272000e-01

Joint ci ratio: 6.000629e-02	ci left: 1.705470e-01	ci right 1.811475e-01	k: 3516	n:20000
Cons ci ratio: 7.854219e-02	ci left: 1.063834e-01	ci right 1.151301e-01	k: 2214	n:20000
KS ci ratio: 6.403515e-02	ci left: 1.527233e-01	ci right 1.628764e-01	k: 3155	n:20000
SH2D1A   20000 perm   3 sec   (5870 perm/sec)   p_kst 1.577500e-01   p_cons 1.107000e-01   p_joint 1.758000e-01

Outputting figure to mutsig2_images.part000000000156/SH2D1A.2_403_20000_0.15775_0.1107_0.1758.png
                gene_name: SH2D1A
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 96 percent done.
SH2D2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.384527e-02	ci left: 7.210814e-01	ci right 7.385845e-01	k: 7299	n:10000
Cons ci ratio: 2.724812e-02	ci left: 6.649144e-01	ci right 6.833840e-01	k: 6742	n:10000
KS ci ratio: 5.090022e-02	ci left: 3.627141e-01	ci right 3.817604e-01	k: 3722	n:10000
SH2D2A   10000 perm   2 sec   (5769 perm/sec)   p_kst 3.722000e-01   p_cons 6.742000e-01   p_joint 7.299000e-01

Outputting figure to mutsig2_images.part000000000156/SH2D2A.2_1232_10000_0.3722_0.6742_0.7299.png
                gene_name: SH2D2A
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 98 percent done.
SH2D3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.520321e-02	ci left: 5.436920e-01	ci right 5.632768e-01	k: 5535	n:10000
Cons ci ratio: 5.818335e-02	ci left: 3.030243e-01	ci right 3.212853e-01	k: 3121	n:10000
KS ci ratio: 4.499582e-02	ci left: 4.216640e-01	ci right 4.411760e-01	k: 4314	n:10000
SH2D3C   10000 perm   2 sec   (6050 perm/sec)   p_kst 4.314000e-01   p_cons 3.121000e-01   p_joint 5.535000e-01

Outputting figure to mutsig2_images.part000000000156/SH2D3C.2_2764_10000_0.4314_0.3121_0.5535.png
                gene_name: SH2D3C
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000156
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 156 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1645>
Subject: Job 9894130: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1645>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000157> was used as the working directory.
Started at Sat Oct  6 00:29:23 2012
Results reported at Sat Oct  6 00:45:37 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000157.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000157.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 157  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000157.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1008.30 sec.
    Max Memory :      3523 MB
    Max Swap   :      5957 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
157
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 157
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 157: processing genes 14064 - 14154
Calculating significance of each gene.
Using projection method.
14064	SH3BGRL2	2.505507e-01
14065	SH3BGRL3	1
14066	SH3BP1	8.217213e-01
14067	SH3BP2	9.795931e-01
14068	SH3BP4	8.303588e-01
14069	SH3BP5	2.540948e-01
14070	SH3BP5L	7.087177e-01
14071	SH3D19	9.196710e-01
14072	SH3GL1	9.156851e-01
14073	SH3GL2	2.649621e-01
14074	SH3GL3	2.571754e-04
14075	SH3GLB1	1.184229e-01
14076	SH3GLB2	4.461521e-01
14077	SH3KBP1	4.133004e-01
14078	SH3PXD2A	4.310393e-01
14079	SH3PXD2B	4.064475e-01
14080	SH3RF1	8.932460e-01
14081	SH3RF2	1
14082	SH3RF3	7.088432e-01
In gene SH3TC1 the following bins exceed PROBCAP:
    READ-AG-4015	categ 6	N = 3706    n = 1	mu =   3.29e-07
14083	SH3TC1	8.812295e-01
14084	SH3TC2	3.955933e-01
14085	SH3YL1	5.759431e-01
14086	SHANK1	1.994227e-01
14087	SHANK2	9.935110e-01
14088	SHANK3	8.957237e-01
14089	SHARPIN	1
14090	SHB	1
14091	SHBG	6.991284e-01
14092	SHC1	3.986374e-01
In gene SHC2 the following bins exceed PROBCAP:
    READ-AG-3727	categ 6	N = 1155    n = 1	mu =   2.96e-07
14093	SHC2	7.166249e-01
14094	SHC3	8.492418e-01
14095	SHC4	2.454219e-02
14096	SHCBP1	2.649180e-01
14097	SHD	1.421383e-01
14098	SHE	8.607559e-01
14099	SHF	4.808561e-01
14100	SHFM1	2.668769e-01
14101	SHH	1
14102	SHISA2	1
14103	SHISA3	6.045678e-01
14104	SHISA4	1
In gene SHISA5 the following bins exceed PROBCAP:
    COAD-AA-3678	categ 6	N = 667     n = 1	mu =   2.96e-07
14105	SHISA5	3.985201e-01
14106	SHKBP1	4.615392e-01
14107	SHMT1	5.368961e-01
14108	SHMT2	7.404499e-01
14109	SHOC2	5.515822e-01
14110	SHOX2	5.626931e-01
14111	SHPK	6.956067e-01
14112	SHPRH	4.456351e-01
14113	SHQ1	2.706477e-01
14114	SHROOM1	9.502795e-01
14115	SHROOM2	9.985276e-01
14116	SHROOM3	9.638616e-01
14117	SHROOM4	8.965142e-01
14118	SI	1.665951e-01
14119	SIAE	3.754408e-01
14120	SIAH1	5.855127e-01
14121	SIAH2	1.229231e-01
14122	SIAH3	1
14123	SIDT1	1.421742e-01
14124	SIDT2	1.148162e-01
14125	SIGIRR	1
14126	SIGLEC1	9.758998e-01
14127	SIGLEC10	2.359391e-01
14128	SIGLEC11	3.159596e-01
14129	SIGLEC12	8.403623e-02
14130	SIGLEC14	4.685868e-01
14131	SIGLEC15	7.156278e-01
14132	SIGLEC5	8.484728e-01
14133	SIGLEC6	2.467120e-02
14134	SIGLEC7	2.026926e-01
14135	SIGLEC8	4.690487e-03
14136	SIGLEC9	1.100760e-01
14137	SIGMAR1	6.342946e-01
14138	SIK1	9.765542e-01
14139	SIK2	8.455220e-01
14140	SIK3	8.761042e-01
14141	SIKE1	5.624291e-01
14142	SIL1	4.250894e-01
14143	SILV	3.084188e-01
14144	SIM1	1.025776e-01
14145	SIM2	1
14146	SIN3A	8.247561e-01
14147	SIN3B	8.154575e-01
14148	SIP1	1.518935e-01
14149	SIPA1	9.838719e-01
14150	SIPA1L1	6.874577e-01
14151	SIPA1L2	9.085885e-01
14152	SIPA1L3	5.511311e-01
14153	SIRPA	6.951156e-01
14154	SIRPB1	1.283137e-01
Done

Running MutSig 2:
Scatter job 157: processing genes 14064 - 14154
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.556785e-02	ci left: 5.385833e-01	ci right 5.581885e-01	k: 5484	n:10000
KS ci ratio: 2.228181e-02	ci left: 7.472560e-01	ci right 7.641948e-01	k: 7558	n:10000
SI   10000 perm   3 sec   (3911 perm/sec)   p_kst 7.558000e-01   p_cons 5.484000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SI.15_5672_10000_0.7558_0.5484_1.png
                gene_name: SI
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
SHPRH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.513917e-02	ci left: 5.445937e-01	ci right 5.641746e-01	k: 5544	n:10000
Cons ci ratio: 1.085878e-02	ci left: 9.235838e-01	ci right 9.337648e-01	k: 9288	n:10000
KS ci ratio: 5.160444e-02	ci left: 3.563500e-01	ci right 3.753282e-01	k: 3658	n:10000
SHPRH   10000 perm   2 sec   (4202 perm/sec)   p_kst 3.658000e-01   p_cons 9.288000e-01   p_joint 5.544000e-01

Outputting figure to mutsig2_images.part000000000157/SHPRH.13_5212_10000_0.3658_0.9288_0.5544.png
                gene_name: SHPRH
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 3 percent done.
SIPA1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.931779e-02	ci left: 1.542387e-01	ci right 1.687591e-01	k: 1614	n:10000
Cons ci ratio: 6.430867e-02	ci left: 2.621082e-01	ci right 2.796255e-01	k: 2708	n:10000
KS ci ratio: 1.230716e-01	ci left: 8.640461e-02	ci right 9.783428e-02	k: 920	n:10000
SIPA1L1   10000 perm   2 sec   (4164 perm/sec)   p_kst 9.200000e-02   p_cons 2.708000e-01   p_joint 1.614000e-01

Joint ci ratio: 7.146855e-02	ci left: 1.260574e-01	ci right 1.354502e-01	k: 2614	n:20000
Cons ci ratio: 4.588559e-02	ci left: 2.611759e-01	ci right 2.734919e-01	k: 5346	n:20000
KS ci ratio: 8.765693e-02	ci left: 8.690165e-02	ci right 9.491774e-02	k: 1817	n:20000
SIPA1L1   20000 perm   5 sec   (3862 perm/sec)   p_kst 9.085000e-02   p_cons 2.673000e-01   p_joint 1.307000e-01

Outputting figure to mutsig2_images.part000000000157/SIPA1L1.13_5499_20000_0.09085_0.2673_0.1307.png
                gene_name: SIPA1L1
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 5 percent done.
SHANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.469819e-01	ci left: 6.150035e-02	ci right 7.135407e-02	k: 663	n:10000
Cons ci ratio: 1.370683e-01	ci left: 7.039603e-02	ci right 8.085279e-02	k: 755	n:10000
KS ci ratio: 1.084215e-01	ci left: 1.092981e-01	ci right 1.219268e-01	k: 1155	n:10000
SHANK1   10000 perm   2 sec   (4137 perm/sec)   p_kst 1.155000e-01   p_cons 7.550000e-02   p_joint 6.630000e-02

Joint ci ratio: 1.036003e-01	ci left: 6.332911e-02	ci right 7.029747e-02	k: 1335	n:20000
Cons ci ratio: 9.851894e-02	ci left: 6.972516e-02	ci right 7.699946e-02	k: 1466	n:20000
KS ci ratio: 7.300184e-02	ci left: 1.213813e-01	ci right 1.306278e-01	k: 2519	n:20000
SHANK1   20000 perm   5 sec   (3792 perm/sec)   p_kst 1.259500e-01   p_cons 7.330000e-02   p_joint 6.675000e-02

Joint ci ratio: 9.864970e-02	ci left: 4.752822e-02	ci right 5.249272e-02	k: 1499	n:30000
Cons ci ratio: 8.163826e-02	ci left: 6.844579e-02	ci right 7.430421e-02	k: 2140	n:30000
KS ci ratio: 6.014435e-02	ci left: 1.202904e-01	ci right 1.277826e-01	k: 3720	n:30000
SHANK1   30000 perm   8 sec   (3664 perm/sec)   p_kst 1.240000e-01   p_cons 7.133333e-02   p_joint 4.996667e-02

Outputting figure to mutsig2_images.part000000000157/SHANK1.11_6578_30000_0.124_0.071333_0.049967.png
                gene_name: SHANK1
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.052 

Current progress: 6 percent done.
SIN3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.121749e-02	ci left: 3.598301e-01	ci right 3.788461e-01	k: 3693	n:10000
Cons ci ratio: 8.971560e-02	ci left: 1.530607e-01	ci right 1.675377e-01	k: 1602	n:10000
KS ci ratio: 2.078848e-02	ci left: 7.722565e-01	ci right 7.885799e-01	k: 7805	n:10000
SIN3A   10000 perm   2 sec   (4617 perm/sec)   p_kst 7.805000e-01   p_cons 1.602000e-01   p_joint 3.693000e-01

Outputting figure to mutsig2_images.part000000000157/SIN3A.10_3902_10000_0.7805_0.1602_0.3693.png
                gene_name: SIN3A
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 8 percent done.
SH3GL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.737426e-02	ci left: 2.443046e-01	ci right 2.614396e-01	k: 2528	n:10000
Cons ci ratio: 2.177474e-02	ci left: 7.557537e-01	ci right 7.724921e-01	k: 7642	n:10000
KS ci ratio: 8.958253e-02	ci left: 1.534534e-01	ci right 1.679449e-01	k: 1606	n:10000
SH3GL3   10000 perm   2 sec   (5619 perm/sec)   p_kst 1.606000e-01   p_cons 7.642000e-01   p_joint 2.528000e-01

Outputting figure to mutsig2_images.part000000000157/SH3GL3.9_1080_10000_0.1606_0.7642_0.2528.png
                gene_name: SH3GL3
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 9 percent done.
SH3PXD2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.666552e-01	ci left: 9.230735e-03	ci right 1.346114e-02	k: 112	n:10000
Cons ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
KS ci ratio: 2.729973e-01	ci left: 1.743979e-02	ci right 2.304459e-02	k: 201	n:10000
SH3PXD2B   10000 perm   2 sec   (5259 perm/sec)   p_kst 2.010000e-02   p_cons 1.410000e-02   p_joint 1.120000e-02

Joint ci ratio: 3.523572e-01	ci left: 5.068179e-03	ci right 7.279094e-03	k: 122	n:20000
Cons ci ratio: 2.257608e-01	ci left: 1.317232e-02	ci right 1.657086e-02	k: 296	n:20000
KS ci ratio: 1.947721e-01	ci left: 1.791431e-02	ci right 2.182703e-02	k: 396	n:20000
SH3PXD2B   20000 perm   4 sec   (4752 perm/sec)   p_kst 1.980000e-02   p_cons 1.480000e-02   p_joint 6.100000e-03

Joint ci ratio: 2.569179e-01	ci left: 6.710907e-03	ci right 8.719528e-03	k: 230	n:30000
Cons ci ratio: 1.859295e-01	ci left: 1.324141e-02	ci right 1.598710e-02	k: 437	n:30000
KS ci ratio: 1.560504e-01	ci left: 1.899051e-02	ci right 2.223659e-02	k: 617	n:30000
SH3PXD2B   30000 perm   7 sec   (4552 perm/sec)   p_kst 2.056667e-02   p_cons 1.456667e-02   p_joint 7.666667e-03

Joint ci ratio: 2.395472e-01	ci left: 5.853483e-03	ci right 7.469389e-03	k: 265	n:40000
Cons ci ratio: 1.597755e-01	ci left: 1.363948e-02	ci right 1.603171e-02	k: 592	n:40000
KS ci ratio: 1.334185e-01	ci left: 1.971394e-02	ci right 2.255618e-02	k: 844	n:40000
SH3PXD2B   40000 perm   9 sec   (4426 perm/sec)   p_kst 2.110000e-02   p_cons 1.480000e-02   p_joint 6.625000e-03

Joint ci ratio: 2.234025e-01	ci left: 5.436306e-03	ci right 6.821974e-03	k: 305	n:50000
Cons ci ratio: 1.440213e-01	ci left: 1.354762e-02	ci right 1.566929e-02	k: 729	n:50000
KS ci ratio: 1.202231e-01	ci left: 1.956696e-02	ci right 2.208911e-02	k: 1040	n:50000
SH3PXD2B   50000 perm   12 sec   (4322 perm/sec)   p_kst 2.080000e-02   p_cons 1.458000e-02   p_joint 6.100000e-03

Joint ci ratio: 2.265130e-01	ci left: 4.404161e-03	ci right 5.544532e-03	k: 297	n:60000
Cons ci ratio: 1.320093e-01	ci left: 1.352646e-02	ci right 1.545426e-02	k: 868	n:60000
KS ci ratio: 1.102996e-01	ci left: 1.947836e-02	ci right 2.176834e-02	k: 1236	n:60000
SH3PXD2B   60000 perm   14 sec   (4225 perm/sec)   p_kst 2.060000e-02   p_cons 1.446667e-02   p_joint 4.950000e-03

Joint ci ratio: 1.288119e-01	ci left: 1.221545e-02	ci right 1.391098e-02	k: 913	n:70000
Cons ci ratio: 1.217205e-01	ci left: 1.371061e-02	ci right 1.550138e-02	k: 1021	n:70000
KS ci ratio: 1.014794e-01	ci left: 1.981125e-02	ci right 2.194301e-02	k: 1460	n:70000
SH3PXD2B   70000 perm   17 sec   (4140 perm/sec)   p_kst 2.085714e-02   p_cons 1.458571e-02   p_joint 1.304286e-02

Joint ci ratio: 1.415154e-01	ci left: 8.827333e-03	ci right 1.018359e-02	k: 759	n:80000
Cons ci ratio: 1.138098e-01	ci left: 1.378023e-02	ci right 1.545525e-02	k: 1168	n:80000
KS ci ratio: 9.565086e-02	ci left: 1.957806e-02	ci right 2.155692e-02	k: 1644	n:80000
SH3PXD2B   80000 perm   20 sec   (4065 perm/sec)   p_kst 2.055000e-02   p_cons 1.460000e-02   p_joint 9.487500e-03

Joint ci ratio: 1.440978e-01	ci left: 7.567591e-03	ci right 8.753328e-03	k: 733	n:90000
Cons ci ratio: 1.068127e-01	ci left: 1.395630e-02	ci right 1.554187e-02	k: 1326	n:90000
KS ci ratio: 8.994822e-02	ci left: 1.973627e-02	ci right 2.160592e-02	k: 1859	n:90000
SH3PXD2B   90000 perm   23 sec   (3998 perm/sec)   p_kst 2.065556e-02   p_cons 1.473333e-02   p_joint 8.144444e-03

Joint ci ratio: 1.446543e-01	ci left: 6.762432e-03	ci right 7.826446e-03	k: 728	n:100000
Cons ci ratio: 1.007245e-01	ci left: 1.416795e-02	ci right 1.568038e-02	k: 1491	n:100000
KS ci ratio: 8.551569e-02	ci left: 1.969919e-02	ci right 2.146877e-02	k: 2057	n:100000
SH3PXD2B   100000 perm   25 sec   (3929 perm/sec)   p_kst 2.057000e-02   p_cons 1.491000e-02   p_joint 7.280000e-03

Joint ci ratio: 1.613627e-01	ci left: 4.905638e-03	ci right 5.775302e-03	k: 586	n:110000
Cons ci ratio: 9.571792e-02	ci left: 1.429882e-02	ci right 1.574509e-02	k: 1651	n:110000
KS ci ratio: 8.199580e-02	ci left: 1.951927e-02	ci right 2.119706e-02	k: 2238	n:110000
SH3PXD2B   110000 perm   28 sec   (3865 perm/sec)   p_kst 2.034545e-02   p_cons 1.500909e-02   p_joint 5.327273e-03

Joint ci ratio: 1.463678e-01	ci left: 5.506616e-03	ci right 6.384185e-03	k: 712	n:120000
Cons ci ratio: 9.237903e-02	ci left: 1.409994e-02	ci right 1.547365e-02	k: 1773	n:120000
KS ci ratio: 8.118445e-02	ci left: 1.828403e-02	ci right 1.983934e-02	k: 2286	n:120000
SH3PXD2B   120000 perm   32 sec   (3805 perm/sec)   p_kst 1.905000e-02   p_cons 1.477500e-02   p_joint 5.933333e-03

Joint ci ratio: 1.416828e-01	ci left: 5.438943e-03	ci right 6.275637e-03	k: 760	n:130000
Cons ci ratio: 8.868080e-02	ci left: 1.415059e-02	ci right 1.547118e-02	k: 1924	n:130000
KS ci ratio: 7.831563e-02	ci left: 1.816667e-02	ci right 1.965490e-02	k: 2457	n:130000
SH3PXD2B   130000 perm   35 sec   (3748 perm/sec)   p_kst 1.890000e-02   p_cons 1.480000e-02   p_joint 5.846154e-03

Joint ci ratio: 1.369954e-01	ci left: 5.415818e-03	ci right 6.219143e-03	k: 813	n:140000
Cons ci ratio: 8.560341e-02	ci left: 1.412502e-02	ci right 1.539519e-02	k: 2065	n:140000
KS ci ratio: 7.567220e-02	ci left: 1.809496e-02	ci right 1.952507e-02	k: 2632	n:140000
SH3PXD2B   140000 perm   38 sec   (3692 perm/sec)   p_kst 1.880000e-02   p_cons 1.475000e-02   p_joint 5.807143e-03

Joint ci ratio: 1.325140e-01	ci left: 5.415513e-03	ci right 6.190444e-03	k: 869	n:150000
Cons ci ratio: 8.284469e-02	ci left: 1.409702e-02	ci right 1.532184e-02	k: 2205	n:150000
KS ci ratio: 7.308085e-02	ci left: 1.813175e-02	ci right 1.951360e-02	k: 2822	n:150000
SH3PXD2B   150000 perm   41 sec   (3637 perm/sec)   p_kst 1.881333e-02   p_cons 1.470000e-02   p_joint 5.793333e-03

Joint ci ratio: 1.305904e-01	ci left: 5.234163e-03	ci right 5.971426e-03	k: 895	n:160000
Cons ci ratio: 8.014609e-02	ci left: 1.414049e-02	ci right 1.532719e-02	k: 2356	n:160000
KS ci ratio: 7.088269e-02	ci left: 1.809098e-02	ci right 1.942654e-02	k: 3000	n:160000
SH3PXD2B   160000 perm   45 sec   (3584 perm/sec)   p_kst 1.875000e-02   p_cons 1.472500e-02   p_joint 5.593750e-03

Joint ci ratio: 1.276386e-01	ci left: 5.165338e-03	ci right 5.875215e-03	k: 937	n:170000
Cons ci ratio: 7.788443e-02	ci left: 1.411018e-02	ci right 1.525940e-02	k: 2495	n:170000
KS ci ratio: 6.886061e-02	ci left: 1.806134e-02	ci right 1.935515e-02	k: 3179	n:170000
SH3PXD2B   170000 perm   48 sec   (3532 perm/sec)   p_kst 1.870000e-02   p_cons 1.467647e-02   p_joint 5.511765e-03

Joint ci ratio: 1.251352e-01	ci left: 5.082797e-03	ci right 5.766613e-03	k: 975	n:180000
Cons ci ratio: 7.595042e-02	ci left: 1.402914e-02	ci right 1.514213e-02	k: 2624	n:180000
KS ci ratio: 6.699209e-02	ci left: 1.804094e-02	ci right 1.929686e-02	k: 3359	n:180000
SH3PXD2B   180000 perm   52 sec   (3480 perm/sec)   p_kst 1.866111e-02   p_cons 1.457778e-02   p_joint 5.416667e-03

Joint ci ratio: 1.183920e-01	ci left: 5.397068e-03	ci right 6.081302e-03	k: 1089	n:190000
Cons ci ratio: 7.377401e-02	ci left: 1.410163e-02	ci right 1.518694e-02	k: 2781	n:190000
KS ci ratio: 6.522094e-02	ci left: 1.804900e-02	ci right 1.927101e-02	k: 3544	n:190000
SH3PXD2B   190000 perm   55 sec   (3424 perm/sec)   p_kst 1.865263e-02   p_cons 1.463684e-02   p_joint 5.731579e-03

Joint ci ratio: 1.151607e-01	ci left: 5.428165e-03	ci right 6.096282e-03	k: 1151	n:200000
Cons ci ratio: 7.165095e-02	ci left: 1.421639e-02	ci right 1.527774e-02	k: 2948	n:200000
KS ci ratio: 6.336718e-02	ci left: 1.817971e-02	ci right 1.937430e-02	k: 3754	n:200000
SH3PXD2B   200000 perm   59 sec   (3377 perm/sec)   p_kst 1.877000e-02   p_cons 1.474000e-02   p_joint 5.755000e-03

Joint ci ratio: 1.136974e-01	ci left: 5.308431e-03	ci right 5.952950e-03	k: 1181	n:210000
Cons ci ratio: 6.971254e-02	ci left: 1.431595e-02	ci right 1.535465e-02	k: 3114	n:210000
KS ci ratio: 6.200653e-02	ci left: 1.809676e-02	ci right 1.925944e-02	k: 3921	n:210000
SH3PXD2B   210000 perm   63 sec   (3332 perm/sec)   p_kst 1.867143e-02   p_cons 1.482857e-02   p_joint 5.623810e-03

Joint ci ratio: 1.130885e-01	ci left: 5.124526e-03	ci right 5.743160e-03	k: 1194	n:220000
Cons ci ratio: 6.815569e-02	ci left: 1.430849e-02	ci right 1.532254e-02	k: 3258	n:220000
KS ci ratio: 6.072991e-02	ci left: 1.802160e-02	ci right 1.915477e-02	k: 4088	n:220000
SH3PXD2B   220000 perm   67 sec   (3291 perm/sec)   p_kst 1.858182e-02   p_cons 1.480909e-02   p_joint 5.427273e-03

Joint ci ratio: 1.107061e-01	ci left: 5.121479e-03	ci right 5.725871e-03	k: 1246	n:230000
Cons ci ratio: 6.657964e-02	ci left: 1.435322e-02	ci right 1.534601e-02	k: 3414	n:230000
KS ci ratio: 5.930225e-02	ci left: 1.809030e-02	ci right 1.920014e-02	k: 4287	n:230000
SH3PXD2B   230000 perm   71 sec   (3251 perm/sec)   p_kst 1.863913e-02   p_cons 1.484348e-02   p_joint 5.417391e-03

Joint ci ratio: 1.096195e-01	ci left: 5.009364e-03	ci right 5.594347e-03	k: 1271	n:240000
Cons ci ratio: 6.505265e-02	ci left: 1.441908e-02	ci right 1.539269e-02	k: 3576	n:240000
KS ci ratio: 5.811611e-02	ci left: 1.806320e-02	ci right 1.914847e-02	k: 4464	n:240000
SH3PXD2B   240000 perm   75 sec   (3212 perm/sec)   p_kst 1.860000e-02   p_cons 1.490000e-02   p_joint 5.295833e-03

Joint ci ratio: 1.126999e-01	ci left: 4.544489e-03	ci right 5.091088e-03	k: 1203	n:250000
Cons ci ratio: 6.365203e-02	ci left: 1.446809e-02	ci right 1.542320e-02	k: 3735	n:250000
KS ci ratio: 5.684265e-02	ci left: 1.813708e-02	ci right 1.920212e-02	k: 4666	n:250000
SH3PXD2B   250000 perm   79 sec   (3171 perm/sec)   p_kst 1.866400e-02   p_cons 1.494000e-02   p_joint 4.812000e-03

Joint ci ratio: 1.102974e-01	ci left: 4.567865e-03	ci right 5.104802e-03	k: 1256	n:260000
Cons ci ratio: 6.237067e-02	ci left: 1.449839e-02	ci right 1.543554e-02	k: 3890	n:260000
KS ci ratio: 5.572524e-02	ci left: 1.815620e-02	ci right 1.920073e-02	k: 4855	n:260000
SH3PXD2B   260000 perm   83 sec   (3132 perm/sec)   p_kst 1.867308e-02   p_cons 1.496154e-02   p_joint 4.830769e-03

Joint ci ratio: 1.083335e-01	ci left: 4.564397e-03	ci right 5.090763e-03	k: 1302	n:270000
Cons ci ratio: 6.116370e-02	ci left: 1.452663e-02	ci right 1.544679e-02	k: 4045	n:270000
KS ci ratio: 5.473761e-02	ci left: 1.813024e-02	ci right 1.915420e-02	k: 5032	n:270000
SH3PXD2B   270000 perm   87 sec   (3092 perm/sec)   p_kst 1.863704e-02   p_cons 1.498148e-02   p_joint 4.822222e-03

Joint ci ratio: 9.925976e-02	ci left: 5.264235e-03	ci right 5.817504e-03	k: 1550	n:280000
Cons ci ratio: 6.012598e-02	ci left: 1.450375e-02	ci right 1.540633e-02	k: 4186	n:280000
KS ci ratio: 5.376916e-02	ci left: 1.812744e-02	ci right 1.913256e-02	k: 5215	n:280000
SH3PXD2B   280000 perm   92 sec   (3057 perm/sec)   p_kst 1.862500e-02   p_cons 1.495000e-02   p_joint 5.535714e-03

Outputting figure to mutsig2_images.part000000000157/SH3PXD2B.9_2788_280000_0.018625_0.01495_0.0055357.png
                gene_name: SH3PXD2B
               theta_stop: 0.099 
                    nperm: 280000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.0055 
     ci_joint_bounds_left: 0.0053 
    ci_joint_bounds_right: 0.0058 

Current progress: 11 percent done.
SIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.159900e-03	ci left: 9.641510e-01	ci right 9.711731e-01	k: 9678	n:10000
KS ci ratio: 1.757859e-02	ci left: 8.251362e-01	ci right 8.398695e-01	k: 8326	n:10000
SIM1   10000 perm   2 sec   (5725 perm/sec)   p_kst 8.326000e-01   p_cons 9.678000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SIM1.9_2345_10000_0.8326_0.9678_1.png
                gene_name: SIM1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
SIDT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.878995e-01	ci left: 1.557819e-02	ci right 2.090773e-02	k: 181	n:10000
Cons ci ratio: 5.585987e-01	ci left: 3.541199e-03	ci right 6.359123e-03	k: 48	n:10000
KS ci ratio: 4.727859e-02	ci left: 3.976482e-01	ci right 4.170058e-01	k: 4073	n:10000
SIDT2   10000 perm   2 sec   (5244 perm/sec)   p_kst 4.073000e-01   p_cons 4.800000e-03   p_joint 1.810000e-02

Joint ci ratio: 1.968048e-01	ci left: 1.753359e-02	ci right 2.140790e-02	k: 388	n:20000
Cons ci ratio: 3.815379e-01	ci left: 4.250695e-03	ci right 6.297200e-03	k: 104	n:20000
KS ci ratio: 3.395555e-02	ci left: 3.930509e-01	ci right 4.066782e-01	k: 7997	n:20000
SIDT2   20000 perm   4 sec   (4739 perm/sec)   p_kst 3.998500e-01   p_cons 5.200000e-03   p_joint 1.940000e-02

Joint ci ratio: 1.352610e-01	ci left: 2.538853e-02	ci right 2.910379e-02	k: 816	n:30000
Cons ci ratio: 3.024883e-01	ci left: 4.725427e-03	ci right 6.439129e-03	k: 166	n:30000
KS ci ratio: 2.787139e-02	ci left: 3.917895e-01	ci right 4.028971e-01	k: 11920	n:30000
SIDT2   30000 perm   7 sec   (4555 perm/sec)   p_kst 3.973333e-01   p_cons 5.533333e-03   p_joint 2.720000e-02

Joint ci ratio: 1.444611e-01	ci left: 1.676790e-02	ci right 1.940272e-02	k: 722	n:40000
Cons ci ratio: 2.560555e-01	ci left: 5.079395e-03	ci right 6.593699e-03	k: 232	n:40000
KS ci ratio: 2.408907e-02	ci left: 3.934975e-01	ci right 4.031172e-01	k: 15932	n:40000
SIDT2   40000 perm   9 sec   (4417 perm/sec)   p_kst 3.983000e-01   p_cons 5.800000e-03   p_joint 1.805000e-02

Joint ci ratio: 9.580153e-02	ci left: 3.084569e-02	ci right 3.396891e-02	k: 1619	n:50000
Cons ci ratio: 2.241407e-01	ci left: 5.398537e-03	ci right 6.779752e-03	k: 303	n:50000
KS ci ratio: 2.155332e-02	ci left: 3.938453e-01	ci right 4.024465e-01	k: 19907	n:50000
SIDT2   50000 perm   12 sec   (4311 perm/sec)   p_kst 3.981400e-01   p_cons 6.060000e-03   p_joint 3.238000e-02

Joint ci ratio: 9.798121e-02	ci left: 2.470877e-02	ci right 2.727069e-02	k: 1558	n:60000
Cons ci ratio: 2.059797e-01	ci left: 5.381914e-03	ci right 6.633261e-03	k: 359	n:60000
KS ci ratio: 1.964573e-02	ci left: 3.949452e-01	ci right 4.027979e-01	k: 23932	n:60000
SIDT2   60000 perm   14 sec   (4218 perm/sec)   p_kst 3.988667e-01   p_cons 5.983333e-03   p_joint 2.596667e-02

Joint ci ratio: 7.748635e-02	ci left: 3.390305e-02	ci right 3.664994e-02	k: 2468	n:70000
Cons ci ratio: 1.886772e-01	ci left: 5.550207e-03	ci right 6.719871e-03	k: 428	n:70000
KS ci ratio: 1.903300e-02	ci left: 3.737215e-01	ci right 3.809172e-01	k: 26412	n:70000
SIDT2   70000 perm   17 sec   (4123 perm/sec)   p_kst 3.773143e-01   p_cons 6.114286e-03   p_joint 3.525714e-02

Joint ci ratio: 7.305703e-02	ci left: 3.346697e-02	ci right 3.601691e-02	k: 2778	n:80000
Cons ci ratio: 1.797071e-01	ci left: 5.381038e-03	ci right 6.455268e-03	k: 472	n:80000
KS ci ratio: 1.784135e-02	ci left: 3.729662e-01	ci right 3.796928e-01	k: 30106	n:80000
SIDT2   80000 perm   20 sec   (4043 perm/sec)   p_kst 3.763250e-01   p_cons 5.900000e-03   p_joint 3.472500e-02

Joint ci ratio: 7.023270e-02	ci left: 3.227931e-02	ci right 3.463977e-02	k: 3010	n:90000
Cons ci ratio: 1.702563e-01	ci left: 5.356874e-03	ci right 6.364265e-03	k: 526	n:90000
KS ci ratio: 1.680522e-02	ci left: 3.735993e-01	ci right 3.799420e-01	k: 33909	n:90000
SIDT2   90000 perm   23 sec   (3971 perm/sec)   p_kst 3.767667e-01   p_cons 5.844444e-03   p_joint 3.344444e-02

Joint ci ratio: 7.399326e-02	ci left: 2.628891e-02	ci right 2.831863e-02	k: 2729	n:100000
Cons ci ratio: 1.607693e-01	ci left: 5.434710e-03	ci right 6.394289e-03	k: 590	n:100000
KS ci ratio: 1.592173e-02	ci left: 3.743842e-01	ci right 3.804029e-01	k: 37739	n:100000
SIDT2   100000 perm   26 sec   (3904 perm/sec)   p_kst 3.773900e-01   p_cons 5.900000e-03   p_joint 2.729000e-02

Joint ci ratio: 7.397655e-02	ci left: 2.396932e-02	ci right 2.581948e-02	k: 2737	n:110000
Cons ci ratio: 1.532994e-01	ci left: 5.455944e-03	ci right 6.370402e-03	k: 649	n:110000
KS ci ratio: 1.518664e-02	ci left: 3.743435e-01	ci right 3.800811e-01	k: 41493	n:110000
SIDT2   110000 perm   29 sec   (3840 perm/sec)   p_kst 3.772091e-01   p_cons 5.900000e-03   p_joint 2.488182e-02

Joint ci ratio: 7.255084e-02	ci left: 2.288764e-02	ci right 2.461881e-02	k: 2849	n:120000
Cons ci ratio: 1.467825e-01	ci left: 5.474499e-03	ci right 6.349638e-03	k: 708	n:120000
KS ci ratio: 1.455047e-02	ci left: 3.741320e-01	ci right 3.796240e-01	k: 45225	n:120000
SIDT2   120000 perm   32 sec   (3782 perm/sec)   p_kst 3.768750e-01   p_cons 5.900000e-03   p_joint 2.374167e-02

Joint ci ratio: 6.927489e-02	ci left: 2.320506e-02	ci right 2.487780e-02	k: 3124	n:130000
Cons ci ratio: 1.423428e-01	ci left: 5.387000e-03	ci right 6.219892e-03	k: 753	n:130000
KS ci ratio: 1.396519e-02	ci left: 3.747255e-01	ci right 3.800031e-01	k: 49057	n:130000
SIDT2   130000 perm   35 sec   (3727 perm/sec)   p_kst 3.773615e-01   p_cons 5.792308e-03   p_joint 2.403077e-02

Joint ci ratio: 6.712771e-02	ci left: 2.297976e-02	ci right 2.458290e-02	k: 3328	n:140000
Cons ci ratio: 1.381091e-01	ci left: 5.326140e-03	ci right 6.123113e-03	k: 800	n:140000
KS ci ratio: 1.343608e-02	ci left: 3.755589e-01	ci right 3.806462e-01	k: 52934	n:140000
SIDT2   140000 perm   38 sec   (3678 perm/sec)   p_kst 3.781000e-01   p_cons 5.714286e-03   p_joint 2.377143e-02

Joint ci ratio: 6.208772e-02	ci left: 2.508233e-02	ci right 2.669607e-02	k: 3882	n:150000
Cons ci ratio: 1.324375e-01	ci left: 5.421959e-03	ci right 6.197330e-03	k: 870	n:150000
KS ci ratio: 1.298879e-02	ci left: 3.753455e-01	ci right 3.802592e-01	k: 56670	n:150000
SIDT2   150000 perm   41 sec   (3629 perm/sec)   p_kst 3.778000e-01   p_cons 5.800000e-03   p_joint 2.588000e-02

Joint ci ratio: 6.187846e-02	ci left: 2.371106e-02	ci right 2.523124e-02	k: 3914	n:160000
Cons ci ratio: 1.281673e-01	ci left: 5.439821e-03	ci right 6.190756e-03	k: 929	n:160000
KS ci ratio: 1.257652e-02	ci left: 3.754172e-01	ci right 3.801747e-01	k: 60447	n:160000
SIDT2   160000 perm   45 sec   (3579 perm/sec)   p_kst 3.777937e-01   p_cons 5.806250e-03   p_joint 2.446250e-02

Joint ci ratio: 5.769008e-02	ci left: 2.567783e-02	ci right 2.720896e-02	k: 4494	n:170000
Cons ci ratio: 1.246662e-01	ci left: 5.421734e-03	ci right 6.148217e-03	k: 982	n:170000
KS ci ratio: 1.220025e-02	ci left: 3.755179e-01	ci right 3.801333e-01	k: 64230	n:170000
SIDT2   170000 perm   48 sec   (3529 perm/sec)   p_kst 3.778235e-01   p_cons 5.776471e-03   p_joint 2.643529e-02

Joint ci ratio: 5.770726e-02	ci left: 2.427268e-02	ci right 2.572045e-02	k: 4498	n:180000
Cons ci ratio: 1.205048e-01	ci left: 5.492119e-03	ci right 6.201716e-03	k: 1051	n:180000
KS ci ratio: 1.185795e-02	ci left: 3.755261e-01	ci right 3.800112e-01	k: 67998	n:180000
SIDT2   180000 perm   52 sec   (3479 perm/sec)   p_kst 3.777667e-01   p_cons 5.838889e-03   p_joint 2.498889e-02

Joint ci ratio: 5.772648e-02	ci left: 2.301029e-02	ci right 2.438324e-02	k: 4501	n:190000
Cons ci ratio: 1.174741e-01	ci left: 5.483917e-03	ci right 6.173397e-03	k: 1106	n:190000
KS ci ratio: 1.154126e-02	ci left: 3.756034e-01	ci right 3.799687e-01	k: 71779	n:190000
SIDT2   190000 perm   55 sec   (3435 perm/sec)   p_kst 3.777842e-01   p_cons 5.821053e-03   p_joint 2.368947e-02

Joint ci ratio: 5.658946e-02	ci left: 2.276655e-02	ci right 2.409731e-02	k: 4685	n:200000
Cons ci ratio: 1.149102e-01	ci left: 5.452450e-03	ci right 6.121997e-03	k: 1156	n:200000
KS ci ratio: 1.125656e-02	ci left: 3.753448e-01	ci right 3.795988e-01	k: 75494	n:200000
SIDT2   200000 perm   59 sec   (3391 perm/sec)   p_kst 3.774700e-01   p_cons 5.780000e-03   p_joint 2.342500e-02

Joint ci ratio: 5.106948e-02	ci left: 2.659308e-02	ci right 2.799144e-02	k: 5730	n:210000
Cons ci ratio: 9.846639e-02	ci left: 7.121486e-03	ci right 7.863634e-03	k: 1572	n:210000
KS ci ratio: 1.099327e-02	ci left: 3.750550e-01	ci right 3.792056e-01	k: 79197	n:210000
SIDT2   210000 perm   63 sec   (3334 perm/sec)   p_kst 3.771286e-01   p_cons 7.485714e-03   p_joint 2.728571e-02

Outputting figure to mutsig2_images.part000000000157/SIDT2.8_2603_210000_0.37713_0.0074857_0.027286.png
                gene_name: SIDT2
               theta_stop: 0.098 
                    nperm: 210000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.0075 
      ci_cons_bounds_left: 0.0071 
     ci_cons_bounds_right: 0.0079 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.028 

Current progress: 14 percent done.
SIPA1L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.534673e-02	ci left: 1.667136e-01	ci right 1.816767e-01	k: 1741	n:10000
Cons ci ratio: 1.849218e-01	ci left: 3.901215e-02	ci right 4.705680e-02	k: 429	n:10000
KS ci ratio: 4.834243e-02	ci left: 3.869933e-01	ci right 4.062670e-01	k: 3966	n:10000
SIPA1L2   10000 perm   2 sec   (4247 perm/sec)   p_kst 3.966000e-01   p_cons 4.290000e-02   p_joint 1.741000e-01

Joint ci ratio: 7.700635e-02	ci left: 1.102658e-01	ci right 1.191466e-01	k: 2293	n:20000
Cons ci ratio: 1.374995e-01	ci left: 3.635916e-02	ci right 4.177590e-02	k: 780	n:20000
KS ci ratio: 3.444144e-02	ci left: 3.862718e-01	ci right 3.998593e-01	k: 7861	n:20000
SIPA1L2   20000 perm   5 sec   (3919 perm/sec)   p_kst 3.930500e-01   p_cons 3.900000e-02   p_joint 1.146500e-01

Joint ci ratio: 5.934592e-02	ci left: 1.231859e-01	ci right 1.307532e-01	k: 3808	n:30000
Cons ci ratio: 1.144993e-01	ci left: 3.544322e-02	ci right 3.978025e-02	k: 1127	n:30000
KS ci ratio: 2.833059e-02	ci left: 3.840095e-01	ci right 3.950786e-01	k: 11686	n:30000
SIPA1L2   30000 perm   8 sec   (3776 perm/sec)   p_kst 3.895333e-01   p_cons 3.756667e-02   p_joint 1.269333e-01

Joint ci ratio: 4.992317e-02	ci left: 1.302059e-01	ci right 1.368974e-01	k: 5341	n:40000
Cons ci ratio: 9.995650e-02	ci left: 3.517134e-02	ci right 3.889625e-02	k: 1480	n:40000
KS ci ratio: 2.448305e-02	ci left: 3.857645e-01	ci right 3.953514e-01	k: 15622	n:40000
SIPA1L2   40000 perm   11 sec   (3690 perm/sec)   p_kst 3.905500e-01   p_cons 3.700000e-02   p_joint 1.335250e-01

Outputting figure to mutsig2_images.part000000000157/SIPA1L2.8_5253_40000_0.39055_0.037_0.13353.png
                gene_name: SIPA1L2
               theta_stop: 0.100 
                    nperm: 40000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 16 percent done.
SIPA1L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.743974e-02	ci left: 8.273742e-01	ci right 8.420303e-01	k: 8348	n:10000
KS ci ratio: 1.409920e-02	ci left: 8.790966e-01	ci right 8.916780e-01	k: 8855	n:10000
SIPA1L3   10000 perm   2 sec   (4426 perm/sec)   p_kst 8.855000e-01   p_cons 8.348000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SIPA1L3.8_5426_10000_0.8855_0.8348_1.png
                gene_name: SIPA1L3
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
SH3TC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.325685e-02	ci left: 3.419380e-01	ci right 3.607487e-01	k: 3513	n:10000
Cons ci ratio: 8.455437e-02	ci left: 1.693677e-01	ci right 1.844210e-01	k: 1768	n:10000
KS ci ratio: 4.888187e-02	ci left: 3.817174e-01	ci right 4.009460e-01	k: 3913	n:10000
SH3TC2   10000 perm   2 sec   (5085 perm/sec)   p_kst 3.913000e-01   p_cons 1.768000e-01   p_joint 3.513000e-01

Outputting figure to mutsig2_images.part000000000157/SH3TC2.7_3935_10000_0.3913_0.1768_0.3513.png
                gene_name: SH3TC2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 19 percent done.
SIDT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.818499e-01	ci left: 4.035041e-02	ci right 4.851765e-02	k: 443	n:10000
Cons ci ratio: 1.910384e-01	ci left: 3.652992e-02	ci right 4.434069e-02	k: 403	n:10000
KS ci ratio: 7.035355e-02	ci left: 2.284954e-01	ci right 2.452581e-01	k: 2368	n:10000
SIDT1   10000 perm   2 sec   (5292 perm/sec)   p_kst 2.368000e-01   p_cons 4.030000e-02   p_joint 4.430000e-02

Joint ci ratio: 1.012644e-01	ci left: 6.615984e-02	ci right 7.326587e-02	k: 1393	n:20000
Cons ci ratio: 1.380522e-01	ci left: 3.606913e-02	ci right 4.146602e-02	k: 774	n:20000
KS ci ratio: 4.793291e-02	ci left: 2.445561e-01	ci right 2.566165e-01	k: 5011	n:20000
SIDT1   20000 perm   4 sec   (4789 perm/sec)   p_kst 2.505500e-01   p_cons 3.870000e-02   p_joint 6.965000e-02

Joint ci ratio: 6.935618e-02	ci left: 9.288589e-02	ci right 9.959253e-02	k: 2886	n:30000
Cons ci ratio: 1.120449e-01	ci left: 3.699955e-02	ci right 4.142359e-02	k: 1175	n:30000
KS ci ratio: 3.910940e-02	ci left: 2.459356e-01	ci right 2.557793e-01	k: 7525	n:30000
SIDT1   30000 perm   7 sec   (4579 perm/sec)   p_kst 2.508333e-01   p_cons 3.916667e-02   p_joint 9.620000e-02

Joint ci ratio: 6.391661e-02	ci left: 8.319620e-02	ci right 8.871409e-02	k: 3437	n:40000
Cons ci ratio: 9.684146e-02	ci left: 3.744124e-02	ci right 4.127600e-02	k: 1573	n:40000
KS ci ratio: 3.376796e-02	ci left: 2.477261e-01	ci right 2.562600e-01	k: 10079	n:40000
SIDT1   40000 perm   9 sec   (4445 perm/sec)   p_kst 2.519750e-01   p_cons 3.932500e-02   p_joint 8.592500e-02

Outputting figure to mutsig2_images.part000000000157/SIDT1.7_2584_40000_0.25198_0.039325_0.085925.png
                gene_name: SIDT1
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.089 

Current progress: 20 percent done.
SIGLEC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.140007e-02	ci left: 7.620288e-01	ci right 7.786135e-01	k: 7704	n:10000
KS ci ratio: 1.885064e-02	ci left: 8.044048e-01	ci right 8.198129e-01	k: 8122	n:10000
SIGLEC10   10000 perm   2 sec   (5813 perm/sec)   p_kst 8.122000e-01   p_cons 7.704000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SIGLEC10.7_2138_10000_0.8122_0.7704_1.png
                gene_name: SIGLEC10
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
SIGLEC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.137775e-01	ci left: 1.000319e-01	ci right 1.121987e-01	k: 1060	n:10000
Cons ci ratio: 2.847868e-02	ci left: 6.450858e-01	ci right 6.638241e-01	k: 6545	n:10000
KS ci ratio: 1.690887e-01	ci left: 4.667345e-02	ci right 5.539046e-02	k: 509	n:10000
SIGLEC11   10000 perm   2 sec   (5513 perm/sec)   p_kst 5.090000e-02   p_cons 6.545000e-01   p_joint 1.060000e-01

Joint ci ratio: 1.006066e-01	ci left: 6.698988e-02	ci right 7.413558e-02	k: 1410	n:20000
Cons ci ratio: 2.146969e-02	ci left: 6.182477e-01	ci right 6.317159e-01	k: 12500	n:20000
KS ci ratio: 1.200634e-01	ci left: 4.755432e-02	ci right 5.367717e-02	k: 1011	n:20000
SIGLEC11   20000 perm   4 sec   (4973 perm/sec)   p_kst 5.055000e-02   p_cons 6.250000e-01   p_joint 7.050000e-02

Joint ci ratio: 7.370270e-02	ci left: 8.298206e-02	ci right 8.936501e-02	k: 2584	n:30000
Cons ci ratio: 1.757511e-02	ci left: 6.182898e-01	ci right 6.292862e-01	k: 18714	n:30000
KS ci ratio: 9.796415e-02	ci left: 4.817930e-02	ci right 5.317484e-02	k: 1519	n:30000
SIGLEC11   30000 perm   6 sec   (4769 perm/sec)   p_kst 5.063333e-02   p_cons 6.238000e-01   p_joint 8.613333e-02

Outputting figure to mutsig2_images.part000000000157/SIGLEC11.7_2141_30000_0.050633_0.6238_0.086133.png
                gene_name: SIGLEC11
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.089 

Current progress: 23 percent done.
SIGLEC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.483114e-02	ci left: 4.234587e-01	ci right 4.429803e-01	k: 4332	n:10000
KS ci ratio: 2.305411e-02	ci left: 7.343154e-01	ci right 7.515429e-01	k: 7430	n:10000
SIGLEC8   10000 perm   2 sec   (6085 perm/sec)   p_kst 7.430000e-01   p_cons 4.332000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SIGLEC8.7_1528_10000_0.743_0.4332_1.png
                gene_name: SIGLEC8
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
SH3PXD2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.273432e-02	ci left: 7.396724e-01	ci right 7.567828e-01	k: 7483	n:10000
Cons ci ratio: 2.597292e-02	ci left: 6.857695e-01	ci right 7.039168e-01	k: 6949	n:10000
KS ci ratio: 3.227051e-02	ci left: 5.863057e-01	ci right 6.056384e-01	k: 5960	n:10000
SH3PXD2A   10000 perm   2 sec   (5107 perm/sec)   p_kst 5.960000e-01   p_cons 6.949000e-01   p_joint 7.483000e-01

Outputting figure to mutsig2_images.part000000000157/SH3PXD2A.6_3374_10000_0.596_0.6949_0.7483.png
                gene_name: SH3PXD2A
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 27 percent done.
SIGLEC12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.252758e-03	ci left: 9.427388e-01	ci right 9.515984e-01	k: 9473	n:10000
Cons ci ratio: 2.504549e-02	ci left: 7.010970e-01	ci right 7.189804e-01	k: 7101	n:10000
KS ci ratio: 2.287309e-02	ci left: 7.373475e-01	ci right 7.545091e-01	k: 7460	n:10000
SIGLEC12   10000 perm   2 sec   (5938 perm/sec)   p_kst 7.460000e-01   p_cons 7.101000e-01   p_joint 9.473000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC12.6_1893_10000_0.746_0.7101_0.9473.png
                gene_name: SIGLEC12
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 28 percent done.
SHC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.161133e-02	ci left: 9.138916e-01	ci right 9.246627e-01	k: 9194	n:10000
KS ci ratio: 2.118228e-02	ci left: 7.656735e-01	ci right 7.821666e-01	k: 7740	n:10000
SHC4   10000 perm   2 sec   (5219 perm/sec)   p_kst 7.740000e-01   p_cons 9.194000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SHC4.5_1941_10000_0.774_0.9194_1.png
                gene_name: SHC4
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
SHKBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.756598e-02	ci left: 8.253397e-01	ci right 8.400660e-01	k: 8328	n:10000
Cons ci ratio: 1.637241e-02	ci left: 8.443782e-01	ci right 8.584164e-01	k: 8515	n:10000
KS ci ratio: 3.411267e-02	ci left: 5.592250e-01	ci right 5.787348e-01	k: 5690	n:10000
SHKBP1   10000 perm   2 sec   (5452 perm/sec)   p_kst 5.690000e-01   p_cons 8.515000e-01   p_joint 8.328000e-01

Outputting figure to mutsig2_images.part000000000157/SHKBP1.5_2196_10000_0.569_0.8515_0.8328.png
                gene_name: SHKBP1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 31 percent done.
SIAH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.302053e-01	ci left: 7.766482e-02	ci right 8.857947e-02	k: 830	n:10000
Cons ci ratio: 1.038522e-01	ci left: 1.181869e-01	ci right 1.312326e-01	k: 1246	n:10000
KS ci ratio: 1.585526e-01	ci left: 5.301669e-02	ci right 6.224312e-02	k: 575	n:10000
SIAH2   10000 perm   2 sec   (6261 perm/sec)   p_kst 5.750000e-02   p_cons 1.246000e-01   p_joint 8.300000e-02

Joint ci ratio: 1.463025e-01	ci left: 3.210991e-02	ci right 3.722654e-02	k: 692	n:20000
Cons ci ratio: 7.659211e-02	ci left: 1.113472e-01	ci right 1.202648e-01	k: 2315	n:20000
KS ci ratio: 1.121161e-01	ci left: 5.436186e-02	ci right 6.086750e-02	k: 1151	n:20000
SIAH2   20000 perm   4 sec   (5632 perm/sec)   p_kst 5.755000e-02   p_cons 1.157500e-01   p_joint 3.460000e-02

Joint ci ratio: 9.082027e-02	ci left: 5.580527e-02	ci right 6.114731e-02	k: 1753	n:30000
Cons ci ratio: 6.233483e-02	ci left: 1.128244e-01	ci right 1.201167e-01	k: 3493	n:30000
KS ci ratio: 9.179701e-02	ci left: 5.466371e-02	ci right 5.995576e-02	k: 1718	n:30000
SIAH2   30000 perm   6 sec   (5356 perm/sec)   p_kst 5.726667e-02   p_cons 1.164333e-01   p_joint 5.843333e-02

Outputting figure to mutsig2_images.part000000000157/SIAH2.5_983_30000_0.057267_0.11643_0.058433.png
                gene_name: SIAH2
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.060 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.061 

Current progress: 33 percent done.
SIGLEC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.074492e-02	ci left: 2.265204e-01	ci right 2.432343e-01	k: 2348	n:10000
Cons ci ratio: 1.665240e-01	ci left: 4.811345e-02	ci right 5.694952e-02	k: 524	n:10000
KS ci ratio: 2.609546e-02	ci left: 6.837536e-01	ci right 7.019339e-01	k: 6929	n:10000
SIGLEC6   10000 perm   2 sec   (5865 perm/sec)   p_kst 6.929000e-01   p_cons 5.240000e-02   p_joint 2.348000e-01

Joint ci ratio: 6.549509e-02	ci left: 1.469022e-01	ci right 1.568992e-01	k: 3037	n:20000
Cons ci ratio: 1.159005e-01	ci left: 5.095625e-02	ci right 5.727417e-02	k: 1081	n:20000
KS ci ratio: 1.847884e-02	ci left: 6.858509e-01	ci right 6.986932e-01	k: 13846	n:20000
SIGLEC6   20000 perm   4 sec   (5223 perm/sec)   p_kst 6.923000e-01   p_cons 5.405000e-02   p_joint 1.518500e-01

Joint ci ratio: 4.991915e-02	ci left: 1.662268e-01	ci right 1.747704e-01	k: 5114	n:30000
Cons ci ratio: 9.576109e-02	ci left: 5.036128e-02	ci right 5.545908e-02	k: 1586	n:30000
KS ci ratio: 1.515656e-02	ci left: 6.850999e-01	ci right 6.955965e-01	k: 20711	n:30000
SIGLEC6   30000 perm   6 sec   (4975 perm/sec)   p_kst 6.903667e-01   p_cons 5.286667e-02   p_joint 1.704667e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC6.5_1427_30000_0.69037_0.052867_0.17047.png
                gene_name: SIGLEC6
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.17 

Current progress: 34 percent done.
SH3GLB1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.402797e-02	ci left: 4.323342e-01	ci right 4.518996e-01	k: 4421	n:10000
Cons ci ratio: 3.241139e-02	ci left: 5.841983e-01	ci right 6.035469e-01	k: 5939	n:10000
KS ci ratio: 5.690767e-02	ci left: 3.125475e-01	ci right 3.309565e-01	k: 3217	n:10000
SH3GLB1   10000 perm   2 sec   (6262 perm/sec)   p_kst 3.217000e-01   p_cons 5.939000e-01   p_joint 4.421000e-01

Outputting figure to mutsig2_images.part000000000157/SH3GLB1.3_1134_10000_0.3217_0.5939_0.4421.png
                gene_name: SH3GLB1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 36 percent done.
SH3KBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.403275e-02	ci left: 7.179511e-01	ci right 7.355166e-01	k: 7268	n:10000
Cons ci ratio: 4.813102e-02	ci left: 3.890841e-01	ci right 4.083750e-01	k: 3987	n:10000
KS ci ratio: 1.038389e-02	ci left: 9.294731e-01	ci right 9.392720e-01	k: 9345	n:10000
SH3KBP1   10000 perm   2 sec   (5553 perm/sec)   p_kst 9.345000e-01   p_cons 3.987000e-01   p_joint 7.268000e-01

Outputting figure to mutsig2_images.part000000000157/SH3KBP1.4_2141_10000_0.9345_0.3987_0.7268.png
                gene_name: SH3KBP1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 38 percent done.
SH3RF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.374855e-02	ci left: 7.226973e-01	ci right 7.401677e-01	k: 7315	n:10000
Cons ci ratio: 5.014647e-02	ci left: 3.696768e-01	ci right 3.887936e-01	k: 3792	n:10000
KS ci ratio: 2.805805e-02	ci left: 6.518275e-01	ci right 6.704785e-01	k: 6612	n:10000
SH3RF3   10000 perm   2 sec   (5744 perm/sec)   p_kst 6.612000e-01   p_cons 3.792000e-01   p_joint 7.315000e-01

Outputting figure to mutsig2_images.part000000000157/SH3RF3.4_2355_10000_0.6612_0.3792_0.7315.png
                gene_name: SH3RF3
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 39 percent done.
SH3TC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.920559e-02	ci left: 2.344220e-01	ci right 2.513280e-01	k: 2428	n:10000
Cons ci ratio: 7.229471e-02	ci left: 2.189190e-01	ci right 2.354402e-01	k: 2271	n:10000
KS ci ratio: 6.933755e-02	ci left: 2.337305e-01	ci right 2.506200e-01	k: 2421	n:10000
SH3TC1   10000 perm   2 sec   (4764 perm/sec)   p_kst 2.421000e-01   p_cons 2.271000e-01   p_joint 2.428000e-01

Outputting figure to mutsig2_images.part000000000157/SH3TC1.4_4079_10000_0.2421_0.2271_0.2428.png
                gene_name: SH3TC1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 41 percent done.
SHCBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.790262e-03	ci left: 9.478349e-01	ci right 9.562992e-01	k: 9522	n:10000
Cons ci ratio: 4.271375e-02	ci left: 4.473000e-01	ci right 4.669250e-01	k: 4571	n:10000
KS ci ratio: 3.106476e-02	ci left: 6.045771e-01	ci right 6.237564e-01	k: 6142	n:10000
SHCBP1   10000 perm   2 sec   (5507 perm/sec)   p_kst 6.142000e-01   p_cons 4.571000e-01   p_joint 9.522000e-01

Outputting figure to mutsig2_images.part000000000157/SHCBP1.4_2071_10000_0.6142_0.4571_0.9522.png
                gene_name: SHCBP1
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 42 percent done.
SHD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.723572e-02	ci left: 6.651158e-01	ci right 6.835825e-01	k: 6744	n:10000
Cons ci ratio: 2.180494e-02	ci left: 7.552478e-01	ci right 7.719984e-01	k: 7637	n:10000
KS ci ratio: 4.406368e-02	ci left: 4.319352e-01	ci right 4.514988e-01	k: 4417	n:10000
SHD   10000 perm   2 sec   (6224 perm/sec)   p_kst 4.417000e-01   p_cons 7.637000e-01   p_joint 6.744000e-01

Outputting figure to mutsig2_images.part000000000157/SHD.4_1047_10000_0.4417_0.7637_0.6744.png
                gene_name: SHD
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 44 percent done.
SHOC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.664326e-02	ci left: 8.400990e-01	ci right 8.542981e-01	k: 8473	n:10000
Cons ci ratio: 2.670404e-02	ci left: 6.737778e-01	ci right 6.921155e-01	k: 6830	n:10000
KS ci ratio: 2.770819e-02	ci left: 6.574640e-01	ci right 6.760388e-01	k: 6668	n:10000
SHOC2   10000 perm   2 sec   (5961 perm/sec)   p_kst 6.668000e-01   p_cons 6.830000e-01   p_joint 8.473000e-01

Outputting figure to mutsig2_images.part000000000157/SHOC2.4_1781_10000_0.6668_0.683_0.8473.png
                gene_name: SHOC2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 45 percent done.
SHQ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.802042e-02	ci left: 5.053515e-01	ci right 5.250397e-01	k: 5152	n:10000
Cons ci ratio: 2.739707e-02	ci left: 6.624978e-01	ci right 6.810020e-01	k: 6718	n:10000
KS ci ratio: 5.297765e-02	ci left: 3.443228e-01	ci right 3.631625e-01	k: 3537	n:10000
SHQ1   10000 perm   2 sec   (5636 perm/sec)   p_kst 3.537000e-01   p_cons 6.718000e-01   p_joint 5.152000e-01

Outputting figure to mutsig2_images.part000000000157/SHQ1.4_1778_10000_0.3537_0.6718_0.5152.png
                gene_name: SHQ1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 47 percent done.
SHROOM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.507876e-01	ci left: 5.850872e-02	ci right 6.814759e-02	k: 632	n:10000
Cons ci ratio: 4.232008e-02	ci left: 4.518913e-01	ci right 4.715310e-01	k: 4617	n:10000
KS ci ratio: 2.971815e-01	ci left: 1.455775e-02	ci right 1.972903e-02	k: 170	n:10000
SHROOM3   10000 perm   2 sec   (4366 perm/sec)   p_kst 1.700000e-02   p_cons 4.617000e-01   p_joint 6.320000e-02

Joint ci ratio: 1.240530e-01	ci left: 4.459306e-02	ci right 5.053936e-02	k: 950	n:20000
Cons ci ratio: 2.964885e-02	ci left: 4.594165e-01	ci right 4.732933e-01	k: 9327	n:20000
KS ci ratio: 2.035806e-01	ci left: 1.634521e-02	ci right 2.009673e-02	k: 363	n:20000
SHROOM3   20000 perm   5 sec   (3982 perm/sec)   p_kst 1.815000e-02   p_cons 4.663500e-01   p_joint 4.750000e-02

Joint ci ratio: 1.062525e-01	ci left: 4.108949e-02	ci right 4.573279e-02	k: 1301	n:30000
Cons ci ratio: 2.409163e-02	ci left: 4.631064e-01	ci right 4.744330e-01	k: 14063	n:30000
KS ci ratio: 1.651492e-01	ci left: 1.690934e-02	ci right 1.998493e-02	k: 552	n:30000
SHROOM3   30000 perm   8 sec   (3825 perm/sec)   p_kst 1.840000e-02   p_cons 4.687667e-01   p_joint 4.336667e-02

Joint ci ratio: 9.084775e-02	ci left: 4.245096e-02	ci right 4.651550e-02	k: 1778	n:40000
Cons ci ratio: 2.087752e-02	ci left: 4.635498e-01	ci right 4.733548e-01	k: 18738	n:40000
KS ci ratio: 1.409289e-01	ci left: 1.763632e-02	ci right 2.033415e-02	k: 758	n:40000
SHROOM3   40000 perm   11 sec   (3728 perm/sec)   p_kst 1.895000e-02   p_cons 4.684500e-01   p_joint 4.445000e-02

Joint ci ratio: 7.062359e-02	ci left: 5.598656e-02	ci right 6.010494e-02	k: 2901	n:50000
Cons ci ratio: 1.865296e-02	ci left: 4.646177e-01	ci right 4.733859e-01	k: 23450	n:50000
KS ci ratio: 1.258314e-01	ci left: 1.784070e-02	ci right 2.025560e-02	k: 951	n:50000
SHROOM3   50000 perm   14 sec   (3651 perm/sec)   p_kst 1.902000e-02   p_cons 4.690000e-01   p_joint 5.802000e-02

Joint ci ratio: 7.206173e-02	ci left: 4.530380e-02	ci right 4.870686e-02	k: 2819	n:60000
Cons ci ratio: 1.706835e-02	ci left: 4.638175e-01	ci right 4.718189e-01	k: 28069	n:60000
KS ci ratio: 1.139262e-01	ci left: 1.824654e-02	ci right 2.046697e-02	k: 1160	n:60000
SHROOM3   60000 perm   17 sec   (3590 perm/sec)   p_kst 1.933333e-02   p_cons 4.678167e-01   p_joint 4.698333e-02

Joint ci ratio: 8.011335e-02	ci left: 3.174494e-02	ci right 3.440823e-02	k: 2314	n:70000
Cons ci ratio: 1.581369e-02	ci left: 4.637553e-01	ci right 4.711617e-01	k: 32722	n:70000
KS ci ratio: 1.058143e-01	ci left: 1.821016e-02	ci right 2.025854e-02	k: 1345	n:70000
SHROOM3   70000 perm   20 sec   (3542 perm/sec)   p_kst 1.921429e-02   p_cons 4.674571e-01   p_joint 3.305714e-02

Joint ci ratio: 7.857087e-02	ci left: 2.898813e-02	ci right 3.137111e-02	k: 2413	n:80000
Cons ci ratio: 1.480339e-02	ci left: 4.636253e-01	ci right 4.705521e-01	k: 37367	n:80000
KS ci ratio: 9.863067e-02	ci left: 1.840666e-02	ci right 2.032842e-02	k: 1548	n:80000
SHROOM3   80000 perm   23 sec   (3497 perm/sec)   p_kst 1.935000e-02   p_cons 4.670875e-01   p_joint 3.016250e-02

Outputting figure to mutsig2_images.part000000000157/SHROOM3.4_6035_80000_0.01935_0.46709_0.030162.png
                gene_name: SHROOM3
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 48 percent done.
SHROOM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.402963e-02	ci left: 8.801201e-01	ci right 8.926539e-01	k: 8865	n:10000
Cons ci ratio: 4.583094e-02	ci left: 4.126927e-01	ci right 4.321525e-01	k: 4224	n:10000
KS ci ratio: 1.395987e-02	ci left: 8.811437e-01	ci right 8.936296e-01	k: 8875	n:10000
SHROOM4   10000 perm   2 sec   (4740 perm/sec)   p_kst 8.875000e-01   p_cons 4.224000e-01   p_joint 8.865000e-01

Outputting figure to mutsig2_images.part000000000157/SHROOM4.4_4518_10000_0.8875_0.4224_0.8865.png
                gene_name: SHROOM4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 50 percent done.
SIAE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.688685e-02	ci left: 8.362290e-01	ci right 8.505703e-01	k: 8435	n:10000
KS ci ratio: 1.966806e-02	ci left: 7.909075e-01	ci right 8.067181e-01	k: 7989	n:10000
SIAE   10000 perm   2 sec   (6034 perm/sec)   p_kst 7.989000e-01   p_cons 8.435000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SIAE.4_1612_10000_0.7989_0.8435_1.png
                gene_name: SIAE
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
SIGLEC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.991301e-02	ci left: 3.718655e-01	ci right 3.910036e-01	k: 3814	n:10000
Cons ci ratio: 1.020487e-02	ci left: 9.316454e-01	ci right 9.412984e-01	k: 9366	n:10000
KS ci ratio: 9.226475e-02	ci left: 1.458000e-01	ci right 1.600028e-01	k: 1528	n:10000
SIGLEC1   10000 perm   2 sec   (4623 perm/sec)   p_kst 1.528000e-01   p_cons 9.366000e-01   p_joint 3.814000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC1.4_5214_10000_0.1528_0.9366_0.3814.png
                gene_name: SIGLEC1
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 53 percent done.
SIGLEC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.062704e-02	ci left: 2.271129e-01	ci right 2.438415e-01	k: 2354	n:10000
Cons ci ratio: 4.257634e-02	ci left: 4.488969e-01	ci right 4.685272e-01	k: 4587	n:10000
KS ci ratio: 1.087408e-01	ci left: 1.087125e-01	ci right 1.213128e-01	k: 1149	n:10000
SIGLEC7   10000 perm   2 sec   (5600 perm/sec)   p_kst 1.149000e-01   p_cons 4.587000e-01   p_joint 2.354000e-01

Joint ci ratio: 4.987901e-02	ci left: 2.300297e-01	ci right 2.418471e-01	k: 4718	n:20000
Cons ci ratio: 2.913279e-02	ci left: 4.681581e-01	ci right 4.820491e-01	k: 9502	n:20000
KS ci ratio: 7.744556e-02	ci left: 1.091353e-01	ci right 1.179774e-01	k: 2270	n:20000
SIGLEC7   20000 perm   4 sec   (5287 perm/sec)   p_kst 1.135000e-01   p_cons 4.751000e-01   p_joint 2.359000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC7.4_1432_20000_0.1135_0.4751_0.2359.png
                gene_name: SIGLEC7
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 55 percent done.
SIGLEC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.187220e-01	ci left: 1.252543e-02	ci right 1.736316e-02	k: 148	n:10000
Cons ci ratio: 3.103695e-01	ci left: 1.326304e-02	ci right 1.822489e-02	k: 156	n:10000
KS ci ratio: 2.839522e-01	ci left: 1.604286e-02	ci right 2.144267e-02	k: 186	n:10000
SIGLEC9   10000 perm   2 sec   (5654 perm/sec)   p_kst 1.860000e-02   p_cons 1.560000e-02   p_joint 1.480000e-02

Joint ci ratio: 3.970395e-01	ci left: 3.889694e-03	ci right 5.858508e-03	k: 96	n:20000
Cons ci ratio: 2.525733e-01	ci left: 1.039659e-02	ci right 1.344778e-02	k: 237	n:20000
KS ci ratio: 2.013387e-01	ci left: 1.672525e-02	ci right 2.051654e-02	k: 371	n:20000
SIGLEC9   20000 perm   4 sec   (5102 perm/sec)   p_kst 1.855000e-02   p_cons 1.185000e-02   p_joint 4.800000e-03

Joint ci ratio: 4.322924e-01	ci left: 2.144750e-03	ci right 3.354753e-03	k: 81	n:30000
Cons ci ratio: 2.155883e-01	ci left: 9.724379e-03	ci right 1.210509e-02	k: 326	n:30000
KS ci ratio: 1.668478e-01	ci left: 1.655765e-02	ci right 1.960336e-02	k: 541	n:30000
SIGLEC9   30000 perm   6 sec   (4901 perm/sec)   p_kst 1.803333e-02   p_cons 1.086667e-02   p_joint 2.700000e-03

Joint ci ratio: 3.857467e-01	ci left: 2.079684e-03	ci right 3.094681e-03	k: 102	n:40000
Cons ci ratio: 1.845774e-01	ci left: 1.012024e-02	ci right 1.220164e-02	k: 445	n:40000
KS ci ratio: 1.436538e-01	ci left: 1.696081e-02	ci right 1.960978e-02	k: 730	n:40000
SIGLEC9   40000 perm   8 sec   (4758 perm/sec)   p_kst 1.825000e-02   p_cons 1.112500e-02   p_joint 2.550000e-03

Joint ci ratio: 3.604356e-01	ci left: 1.935616e-03	ci right 2.803777e-03	k: 117	n:50000
Cons ci ratio: 1.663789e-01	ci left: 1.006589e-02	ci right 1.191154e-02	k: 548	n:50000
KS ci ratio: 1.294841e-01	ci left: 1.683334e-02	ci right 1.918310e-02	k: 899	n:50000
SIGLEC9   50000 perm   11 sec   (4635 perm/sec)   p_kst 1.798000e-02   p_cons 1.096000e-02   p_joint 2.340000e-03

Joint ci ratio: 2.077284e-01	ci left: 5.287067e-03	ci right 6.528124e-03	k: 353	n:60000
Cons ci ratio: 1.517430e-01	ci left: 1.016477e-02	ci right 1.184970e-02	k: 659	n:60000
KS ci ratio: 1.170489e-01	ci left: 1.727491e-02	ci right 1.943870e-02	k: 1100	n:60000
SIGLEC9   60000 perm   13 sec   (4541 perm/sec)   p_kst 1.833333e-02   p_cons 1.098333e-02   p_joint 5.883333e-03

Joint ci ratio: 1.615316e-01	ci left: 7.668634e-03	ci right 9.029736e-03	k: 583	n:70000
Cons ci ratio: 1.415125e-01	ci left: 1.007507e-02	ci right 1.162302e-02	k: 758	n:70000
KS ci ratio: 1.078331e-01	ci left: 1.752853e-02	ci right 1.954023e-02	k: 1296	n:70000
SIGLEC9   70000 perm   16 sec   (4450 perm/sec)   p_kst 1.851429e-02   p_cons 1.082857e-02   p_joint 8.328571e-03

Joint ci ratio: 1.545733e-01	ci left: 7.358272e-03	ci right 8.602807e-03	k: 637	n:80000
Cons ci ratio: 1.327937e-01	ci left: 1.005903e-02	ci right 1.150178e-02	k: 861	n:80000
KS ci ratio: 1.011571e-01	ci left: 1.749216e-02	ci right 1.936800e-02	k: 1473	n:80000
SIGLEC9   80000 perm   18 sec   (4369 perm/sec)   p_kst 1.841250e-02   p_cons 1.076250e-02   p_joint 7.962500e-03

Joint ci ratio: 1.517929e-01	ci left: 6.796979e-03	ci right 7.924012e-03	k: 661	n:90000
Cons ci ratio: 1.254446e-01	ci left: 1.005961e-02	ci right 1.141665e-02	k: 965	n:90000
KS ci ratio: 9.588123e-02	ci left: 1.735838e-02	ci right 1.911732e-02	k: 1640	n:90000
SIGLEC9   90000 perm   21 sec   (4288 perm/sec)   p_kst 1.822222e-02   p_cons 1.072222e-02   p_joint 7.344444e-03

Joint ci ratio: 2.461351e-01	ci left: 2.218766e-03	ci right 2.850640e-03	k: 252	n:100000
Cons ci ratio: 1.093402e-01	ci left: 1.199568e-02	ci right 1.339280e-02	k: 1268	n:100000
KS ci ratio: 9.086795e-02	ci left: 1.743915e-02	ci right 1.910896e-02	k: 1826	n:100000
SIGLEC9   100000 perm   24 sec   (4212 perm/sec)   p_kst 1.826000e-02   p_cons 1.268000e-02   p_joint 2.520000e-03

Joint ci ratio: 1.441069e-01	ci left: 6.200109e-03	ci right 7.171629e-03	k: 734	n:110000
Cons ci ratio: 1.045519e-01	ci left: 1.195804e-02	ci right 1.328603e-02	k: 1387	n:110000
KS ci ratio: 8.745617e-02	ci left: 1.715134e-02	ci right 1.872877e-02	k: 1972	n:110000
SIGLEC9   110000 perm   27 sec   (4136 perm/sec)   p_kst 1.792727e-02   p_cons 1.260909e-02   p_joint 6.672727e-03

Joint ci ratio: 1.930271e-01	ci left: 3.094397e-03	ci right 3.763289e-03	k: 410	n:120000
Cons ci ratio: 1.000401e-01	ci left: 1.200093e-02	ci right 1.327279e-02	k: 1515	n:120000
KS ci ratio: 8.366100e-02	ci left: 1.721446e-02	ci right 1.872563e-02	k: 2155	n:120000
SIGLEC9   120000 perm   30 sec   (4065 perm/sec)   p_kst 1.795833e-02   p_cons 1.262500e-02   p_joint 3.416667e-03

Joint ci ratio: 1.876342e-01	ci left: 3.032177e-03	ci right 3.667219e-03	k: 434	n:130000
Cons ci ratio: 9.524788e-02	ci left: 1.224856e-02	ci right 1.348101e-02	k: 1671	n:130000
KS ci ratio: 8.039060e-02	ci left: 1.723896e-02	ci right 1.869035e-02	k: 2334	n:130000
SIGLEC9   130000 perm   33 sec   (3997 perm/sec)   p_kst 1.795385e-02   p_cons 1.285385e-02   p_joint 3.338462e-03

Joint ci ratio: 1.896348e-01	ci left: 2.754304e-03	ci right 3.338008e-03	k: 425	n:140000
Cons ci ratio: 9.172168e-02	ci left: 1.228751e-02	ci right 1.347565e-02	k: 1802	n:140000
KS ci ratio: 7.772824e-02	ci left: 1.714884e-02	ci right 1.854266e-02	k: 2497	n:140000
SIGLEC9   140000 perm   36 sec   (3931 perm/sec)   p_kst 1.783571e-02   p_cons 1.287143e-02   p_joint 3.035714e-03

Joint ci ratio: 1.863914e-01	ci left: 2.665966e-03	ci right 3.220191e-03	k: 440	n:150000
Cons ci ratio: 8.826015e-02	ci left: 1.240677e-02	ci right 1.355883e-02	k: 1946	n:150000
KS ci ratio: 7.547292e-02	ci left: 1.699946e-02	ci right 1.833928e-02	k: 2649	n:150000
SIGLEC9   150000 perm   39 sec   (3867 perm/sec)   p_kst 1.766000e-02   p_cons 1.297333e-02   p_joint 2.933333e-03

Joint ci ratio: 1.841201e-01	ci left: 2.564892e-03	ci right 3.090880e-03	k: 451	n:160000
Cons ci ratio: 8.549508e-02	ci left: 1.241397e-02	ci right 1.352878e-02	k: 2074	n:160000
KS ci ratio: 7.336310e-02	ci left: 1.688768e-02	ci right 1.817989e-02	k: 2804	n:160000
SIGLEC9   160000 perm   42 sec   (3795 perm/sec)   p_kst 1.752500e-02   p_cons 1.296250e-02   p_joint 2.818750e-03

Joint ci ratio: 1.877084e-01	ci left: 2.318642e-03	ci right 2.804453e-03	k: 434	n:170000
Cons ci ratio: 8.303190e-02	ci left: 1.240353e-02	ci right 1.348376e-02	k: 2199	n:170000
KS ci ratio: 7.104313e-02	ci left: 1.696867e-02	ci right 1.822433e-02	k: 2990	n:170000
SIGLEC9   170000 perm   46 sec   (3719 perm/sec)   p_kst 1.758824e-02   p_cons 1.293529e-02   p_joint 2.552941e-03

Joint ci ratio: 1.829359e-01	ci left: 2.311678e-03	ci right 2.782350e-03	k: 457	n:180000
Cons ci ratio: 8.052479e-02	ci left: 1.247090e-02	ci right 1.352265e-02	k: 2338	n:180000
KS ci ratio: 6.912980e-02	ci left: 1.694294e-02	ci right 1.816156e-02	k: 3158	n:180000
SIGLEC9   180000 perm   49 sec   (3667 perm/sec)   p_kst 1.754444e-02   p_cons 1.298889e-02   p_joint 2.538889e-03

Joint ci ratio: 1.786961e-01	ci left: 2.300558e-03	ci right 2.756936e-03	k: 479	n:190000
Cons ci ratio: 7.850515e-02	ci left: 1.244386e-02	ci right 1.346581e-02	k: 2460	n:190000
KS ci ratio: 6.910671e-02	ci left: 1.607681e-02	ci right 1.723274e-02	k: 3163	n:190000
SIGLEC9   190000 perm   53 sec   (3619 perm/sec)   p_kst 1.664737e-02   p_cons 1.294737e-02   p_joint 2.521053e-03

Joint ci ratio: 1.743901e-01	ci left: 2.300228e-03	ci right 2.744387e-03	k: 503	n:200000
Cons ci ratio: 7.675072e-02	ci left: 1.238059e-02	ci right 1.337360e-02	k: 2574	n:200000
KS ci ratio: 6.726992e-02	ci left: 1.613307e-02	ci right 1.726100e-02	k: 3338	n:200000
SIGLEC9   200000 perm   56 sec   (3570 perm/sec)   p_kst 1.669000e-02   p_cons 1.287000e-02   p_joint 2.515000e-03

Joint ci ratio: 1.742274e-01	ci left: 2.195237e-03	ci right 2.618685e-03	k: 504	n:210000
Cons ci ratio: 7.509472e-02	ci left: 1.232825e-02	ci right 1.329479e-02	k: 2689	n:210000
KS ci ratio: 6.564825e-02	ci left: 1.614685e-02	ci right 1.724750e-02	k: 3505	n:210000
SIGLEC9   210000 perm   60 sec   (3517 perm/sec)   p_kst 1.669048e-02   p_cons 1.280476e-02   p_joint 2.400000e-03

Joint ci ratio: 1.702294e-01	ci left: 2.199843e-03	ci right 2.613442e-03	k: 528	n:220000
Cons ci ratio: 7.347516e-02	ci left: 1.230319e-02	ci right 1.324608e-02	k: 2809	n:220000
KS ci ratio: 6.411186e-02	ci left: 1.617310e-02	ci right 1.724878e-02	k: 3675	n:220000
SIGLEC9   220000 perm   63 sec   (3468 perm/sec)   p_kst 1.670455e-02   p_cons 1.276818e-02   p_joint 2.400000e-03

Joint ci ratio: 1.669490e-01	ci left: 2.191648e-03	ci right 2.594968e-03	k: 549	n:230000
Cons ci ratio: 7.194361e-02	ci left: 1.228478e-02	ci right 1.320582e-02	k: 2930	n:230000
KS ci ratio: 6.270340e-02	ci left: 1.618450e-02	ci right 1.723643e-02	k: 3842	n:230000
SIGLEC9   230000 perm   67 sec   (3420 perm/sec)   p_kst 1.670435e-02   p_cons 1.273913e-02   p_joint 2.386957e-03

Joint ci ratio: 1.635644e-01	ci left: 2.192200e-03	ci right 2.586638e-03	k: 572	n:240000
Cons ci ratio: 7.023643e-02	ci left: 1.236227e-02	ci right 1.326622e-02	k: 3074	n:240000
KS ci ratio: 6.147747e-02	ci left: 1.614594e-02	ci right 1.717411e-02	k: 3997	n:240000
SIGLEC9   240000 perm   71 sec   (3377 perm/sec)   p_kst 1.665417e-02   p_cons 1.280833e-02   p_joint 2.383333e-03

Joint ci ratio: 1.368349e-01	ci left: 3.048054e-03	ci right 3.499583e-03	k: 817	n:250000
Cons ci ratio: 6.873184e-02	ci left: 1.240233e-02	ci right 1.328901e-02	k: 3210	n:250000
KS ci ratio: 6.013695e-02	ci left: 1.620917e-02	ci right 1.721808e-02	k: 4177	n:250000
SIGLEC9   250000 perm   75 sec   (3334 perm/sec)   p_kst 1.670800e-02   p_cons 1.284000e-02   p_joint 3.268000e-03

Joint ci ratio: 1.341555e-01	ci left: 3.053442e-03	ci right 3.496206e-03	k: 850	n:260000
Cons ci ratio: 6.721831e-02	ci left: 1.247733e-02	ci right 1.334896e-02	k: 3356	n:260000
KS ci ratio: 5.895616e-02	ci left: 1.622607e-02	ci right 1.721552e-02	k: 4346	n:260000
SIGLEC9   260000 perm   79 sec   (3292 perm/sec)   p_kst 1.671538e-02   p_cons 1.290769e-02   p_joint 3.269231e-03

Joint ci ratio: 1.349615e-01	ci left: 2.904547e-03	ci right 3.328453e-03	k: 840	n:270000
Cons ci ratio: 6.596290e-02	ci left: 1.248503e-02	ci right 1.334029e-02	k: 3485	n:270000
KS ci ratio: 5.586802e-02	ci left: 1.740686e-02	ci right 1.841093e-02	k: 4834	n:270000
SIGLEC9   270000 perm   83 sec   (3252 perm/sec)   p_kst 1.790370e-02   p_cons 1.290741e-02   p_joint 3.111111e-03

Joint ci ratio: 1.336993e-01	ci left: 2.856030e-03	ci right 3.268647e-03	k: 856	n:280000
Cons ci ratio: 6.499421e-02	ci left: 1.240798e-02	ci right 1.324501e-02	k: 3590	n:280000
KS ci ratio: 5.506897e-02	ci left: 1.728527e-02	ci right 1.826761e-02	k: 4976	n:280000
SIGLEC9   280000 perm   87 sec   (3214 perm/sec)   p_kst 1.777143e-02   p_cons 1.282143e-02   p_joint 3.057143e-03

Joint ci ratio: 1.234379e-01	ci left: 3.251542e-03	ci right 3.682613e-03	k: 1004	n:290000
Cons ci ratio: 6.925295e-02	ci left: 1.054899e-02	ci right 1.130911e-02	k: 3168	n:290000
KS ci ratio: 5.412054e-02	ci left: 1.728784e-02	ci right 1.825287e-02	k: 5152	n:290000
SIGLEC9   290000 perm   91 sec   (3175 perm/sec)   p_kst 1.776552e-02   p_cons 1.092414e-02   p_joint 3.462069e-03

Joint ci ratio: 1.231381e-01	ci left: 3.159300e-03	ci right 3.577051e-03	k: 1009	n:300000
Cons ci ratio: 6.811286e-02	ci left: 1.054790e-02	ci right 1.129493e-02	k: 3275	n:300000
KS ci ratio: 5.322964e-02	ci left: 1.728379e-02	ci right 1.823223e-02	k: 5326	n:300000
SIGLEC9   300000 perm   96 sec   (3138 perm/sec)   p_kst 1.775333e-02   p_cons 1.091667e-02   p_joint 3.363333e-03

Joint ci ratio: 1.210581e-01	ci left: 3.166843e-03	ci right 3.578011e-03	k: 1044	n:310000
Cons ci ratio: 6.712767e-02	ci left: 1.051525e-02	ci right 1.124878e-02	k: 3372	n:310000
KS ci ratio: 5.230396e-02	ci left: 1.733108e-02	ci right 1.826507e-02	k: 5516	n:310000
SIGLEC9   310000 perm   100 sec   (3101 perm/sec)   p_kst 1.779355e-02   p_cons 1.087742e-02   p_joint 3.367742e-03

Joint ci ratio: 1.222438e-01	ci left: 3.007266e-03	ci right 3.401816e-03	k: 1024	n:320000
Cons ci ratio: 6.614548e-02	ci left: 1.049701e-02	ci right 1.121814e-02	k: 3473	n:320000
KS ci ratio: 5.147088e-02	ci left: 1.734468e-02	ci right 1.826408e-02	k: 5696	n:320000
SIGLEC9   320000 perm   104 sec   (3066 perm/sec)   p_kst 1.780000e-02   p_cons 1.085312e-02   p_joint 3.200000e-03

Joint ci ratio: 1.203792e-01	ci left: 3.010164e-03	ci right 3.398641e-03	k: 1056	n:330000
Cons ci ratio: 6.529757e-02	ci left: 1.045013e-02	ci right 1.115850e-02	k: 3564	n:330000
KS ci ratio: 5.063253e-02	ci left: 1.738750e-02	ci right 1.829372e-02	k: 5886	n:330000
SIGLEC9   330000 perm   109 sec   (3031 perm/sec)   p_kst 1.783636e-02   p_cons 1.080000e-02   p_joint 3.200000e-03

Joint ci ratio: 1.204420e-01	ci left: 2.918769e-03	ci right 3.295661e-03	k: 1055	n:340000
Cons ci ratio: 6.439248e-02	ci left: 1.043502e-02	ci right 1.113218e-02	k: 3665	n:340000
KS ci ratio: 4.989241e-02	ci left: 1.738725e-02	ci right 1.827982e-02	k: 6062	n:340000
SIGLEC9   340000 perm   113 sec   (2997 perm/sec)   p_kst 1.782941e-02   p_cons 1.077941e-02   p_joint 3.102941e-03

Joint ci ratio: 1.179526e-01	ci left: 2.960117e-03	ci right 3.333898e-03	k: 1100	n:350000
Cons ci ratio: 6.352400e-02	ci left: 1.042083e-02	ci right 1.110731e-02	k: 3766	n:350000
KS ci ratio: 4.907183e-02	ci left: 1.746613e-02	ci right 1.834759e-02	k: 6266	n:350000
SIGLEC9   350000 perm   118 sec   (2963 perm/sec)   p_kst 1.790286e-02   p_cons 1.076000e-02   p_joint 3.142857e-03

Joint ci ratio: 1.168453e-01	ci left: 2.934510e-03	ci right 3.301338e-03	k: 1121	n:360000
Cons ci ratio: 6.258352e-02	ci left: 1.044304e-02	ci right 1.112043e-02	k: 3880	n:360000
KS ci ratio: 4.829803e-02	ci left: 1.753526e-02	ci right 1.840586e-02	k: 6468	n:360000
SIGLEC9   360000 perm   123 sec   (2930 perm/sec)   p_kst 1.796667e-02   p_cons 1.077778e-02   p_joint 3.113889e-03

Joint ci ratio: 1.150140e-01	ci left: 2.949676e-03	ci right 3.312229e-03	k: 1157	n:370000
Cons ci ratio: 6.163683e-02	ci left: 1.048009e-02	ci right 1.114923e-02	k: 4000	n:370000
KS ci ratio: 4.762883e-02	ci left: 1.755000e-02	ci right 1.840893e-02	k: 6651	n:370000
SIGLEC9   370000 perm   128 sec   (2897 perm/sec)   p_kst 1.797568e-02   p_cons 1.081081e-02   p_joint 3.127027e-03

Joint ci ratio: 1.186720e-01	ci left: 2.693204e-03	ci right 3.035500e-03	k: 1087	n:380000
Cons ci ratio: 6.079152e-02	ci left: 1.049452e-02	ci right 1.115507e-02	k: 4112	n:380000
KS ci ratio: 4.689247e-02	ci left: 1.763427e-02	ci right 1.848363e-02	k: 6861	n:380000
SIGLEC9   380000 perm   133 sec   (2865 perm/sec)   p_kst 1.805526e-02   p_cons 1.082105e-02   p_joint 2.860526e-03

Joint ci ratio: 1.179180e-01	ci left: 2.658979e-03	ci right 2.994629e-03	k: 1101	n:390000
Cons ci ratio: 6.010242e-02	ci left: 1.046533e-02	ci right 1.111632e-02	k: 4207	n:390000
KS ci ratio: 4.635304e-02	ci left: 1.759011e-02	ci right 1.842733e-02	k: 7022	n:390000
SIGLEC9   390000 perm   138 sec   (2835 perm/sec)   p_kst 1.800513e-02   p_cons 1.078718e-02   p_joint 2.823077e-03

Joint ci ratio: 1.166033e-01	ci left: 2.653171e-03	ci right 2.984096e-03	k: 1126	n:400000
Cons ci ratio: 5.937349e-02	ci left: 1.045982e-02	ci right 1.110230e-02	k: 4311	n:400000
KS ci ratio: 4.576698e-02	ci left: 1.759765e-02	ci right 1.842436e-02	k: 7203	n:400000
SIGLEC9   400000 perm   143 sec   (2804 perm/sec)   p_kst 1.800750e-02   p_cons 1.077750e-02   p_joint 2.815000e-03

Joint ci ratio: 1.198498e-01	ci left: 2.446430e-03	ci right 2.760666e-03	k: 1066	n:410000
Cons ci ratio: 5.861681e-02	ci left: 1.047384e-02	ci right 1.110871e-02	k: 4423	n:410000
KS ci ratio: 4.516835e-02	ci left: 1.763141e-02	ci right 1.844859e-02	k: 7395	n:410000
SIGLEC9   410000 perm   148 sec   (2770 perm/sec)   p_kst 1.803659e-02   p_cons 1.078780e-02   p_joint 2.600000e-03

Joint ci ratio: 1.186883e-01	ci left: 2.436689e-03	ci right 2.746427e-03	k: 1087	n:420000
Cons ci ratio: 5.775975e-02	ci left: 1.053419e-02	ci right 1.116306e-02	k: 4555	n:420000
KS ci ratio: 4.464957e-02	ci left: 1.761889e-02	ci right 1.842587e-02	k: 7568	n:420000
SIGLEC9   420000 perm   153 sec   (2741 perm/sec)   p_kst 1.801905e-02   p_cons 1.084524e-02   p_joint 2.588095e-03

Joint ci ratio: 1.180410e-01	ci left: 2.407100e-03	ci right 2.711292e-03	k: 1099	n:430000
Cons ci ratio: 5.713668e-02	ci left: 1.051842e-02	ci right 1.113936e-02	k: 4655	n:430000
KS ci ratio: 4.414827e-02	ci left: 1.760701e-02	ci right 1.840416e-02	k: 7741	n:430000
SIGLEC9   430000 perm   159 sec   (2710 perm/sec)   p_kst 1.800233e-02   p_cons 1.082558e-02   p_joint 2.555814e-03

Joint ci ratio: 1.180445e-01	ci left: 2.352389e-03	ci right 2.649677e-03	k: 1099	n:440000
Cons ci ratio: 5.640162e-02	ci left: 1.055271e-02	ci right 1.116740e-02	k: 4777	n:440000
KS ci ratio: 4.365506e-02	ci left: 1.760246e-02	ci right 1.839027e-02	k: 7917	n:440000
SIGLEC9   440000 perm   164 sec   (2681 perm/sec)   p_kst 1.799318e-02   p_cons 1.085682e-02   p_joint 2.497727e-03

Joint ci ratio: 1.189729e-01	ci left: 2.263450e-03	ci right 2.551905e-03	k: 1082	n:450000
Cons ci ratio: 5.571146e-02	ci left: 1.057894e-02	ci right 1.118738e-02	k: 4896	n:450000
KS ci ratio: 4.347431e-02	ci left: 1.736071e-02	ci right 1.813441e-02	k: 7985	n:450000
SIGLEC9   450000 perm   170 sec   (2655 perm/sec)   p_kst 1.774444e-02   p_cons 1.088000e-02   p_joint 2.404444e-03

Joint ci ratio: 1.183208e-01	ci left: 2.239556e-03	ci right 2.523292e-03	k: 1094	n:460000
Cons ci ratio: 5.500170e-02	ci left: 1.062124e-02	ci right 1.122408e-02	k: 5023	n:460000
KS ci ratio: 4.300847e-02	ci left: 1.735747e-02	ci right 1.812253e-02	k: 8159	n:460000
SIGLEC9   460000 perm   175 sec   (2629 perm/sec)   p_kst 1.773696e-02   p_cons 1.091957e-02   p_joint 2.378261e-03

Joint ci ratio: 1.102852e-01	ci left: 2.532965e-03	ci right 2.830666e-03	k: 1259	n:470000
Cons ci ratio: 5.017709e-02	ci left: 1.249738e-02	ci right 1.314269e-02	k: 6024	n:470000
KS ci ratio: 4.254949e-02	ci left: 1.736073e-02	ci right 1.811757e-02	k: 8336	n:470000
SIGLEC9   470000 perm   181 sec   (2603 perm/sec)   p_kst 1.773617e-02   p_cons 1.281702e-02   p_joint 2.678723e-03

Joint ci ratio: 9.496143e-02	ci left: 3.369467e-03	ci right 3.707403e-03	k: 1697	n:480000
Cons ci ratio: 4.961570e-02	ci left: 1.251888e-02	ci right 1.315786e-02	k: 6161	n:480000
KS ci ratio: 4.212001e-02	ci left: 1.735153e-02	ci right 1.810014e-02	k: 8507	n:480000
SIGLEC9   480000 perm   186 sec   (2577 perm/sec)   p_kst 1.772292e-02   p_cons 1.283542e-02   p_joint 3.535417e-03

Outputting figure to mutsig2_images.part000000000157/SIGLEC9.4_1420_480000_0.017723_0.012835_0.0035354.png
                gene_name: SIGLEC9
               theta_stop: 0.095 
                    nperm: 480000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.0035 
     ci_joint_bounds_left: 0.0034 
    ci_joint_bounds_right: 0.0037 

Current progress: 56 percent done.
SIK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.380955e-02	ci left: 2.118147e-01	ci right 2.281487e-01	k: 2199	n:10000
Cons ci ratio: 1.357136e-01	ci left: 7.175179e-02	ci right 8.229618e-02	k: 769	n:10000
KS ci ratio: 4.306825e-02	ci left: 4.432085e-01	ci right 4.628189e-01	k: 4530	n:10000
SIK2   10000 perm   2 sec   (5174 perm/sec)   p_kst 4.530000e-01   p_cons 7.690000e-02   p_joint 2.199000e-01

Joint ci ratio: 4.556566e-02	ci left: 2.639056e-01	ci right 2.762613e-01	k: 5401	n:20000
Cons ci ratio: 9.688928e-02	ci left: 7.197315e-02	ci right 7.935078e-02	k: 1512	n:20000
KS ci ratio: 2.982815e-02	ci left: 4.564199e-01	ci right 4.702908e-01	k: 9267	n:20000
SIK2   20000 perm   4 sec   (4678 perm/sec)   p_kst 4.633500e-01   p_cons 7.560000e-02   p_joint 2.700500e-01

Outputting figure to mutsig2_images.part000000000157/SIK2.4_2841_20000_0.46335_0.0756_0.27005.png
                gene_name: SIK2
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 58 percent done.
SIK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.902955e-02	ci left: 8.014606e-01	ci right 8.169589e-01	k: 8093	n:10000
Cons ci ratio: 5.570431e-02	ci left: 3.218765e-01	ci right 3.404219e-01	k: 3311	n:10000
KS ci ratio: 2.283085e-02	ci left: 7.380550e-01	ci right 7.552011e-01	k: 7467	n:10000
SIK3   10000 perm   2 sec   (4941 perm/sec)   p_kst 7.467000e-01   p_cons 3.311000e-01   p_joint 8.093000e-01

Outputting figure to mutsig2_images.part000000000157/SIK3.4_3884_10000_0.7467_0.3311_0.8093.png
                gene_name: SIK3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 59 percent done.
SIN3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.320203e-02	ci left: 1.432503e-01	ci right 1.573541e-01	k: 1502	n:10000
Cons ci ratio: 1.844185e-02	ci left: 8.111081e-01	ci right 8.263058e-01	k: 8188	n:10000
KS ci ratio: 1.501555e-01	ci left: 5.899102e-02	ci right 6.866498e-02	k: 637	n:10000
SIN3B   10000 perm   2 sec   (5332 perm/sec)   p_kst 6.370000e-02   p_cons 8.188000e-01   p_joint 1.502000e-01

Joint ci ratio: 6.449679e-02	ci left: 1.508484e-01	ci right 1.609518e-01	k: 3117	n:20000
Cons ci ratio: 1.300037e-02	ci left: 8.143007e-01	ci right 8.250062e-01	k: 16394	n:20000
KS ci ratio: 1.049106e-01	ci left: 6.181689e-02	ci right 6.871016e-02	k: 1304	n:20000
SIN3B   20000 perm   4 sec   (4747 perm/sec)   p_kst 6.520000e-02   p_cons 8.197000e-01   p_joint 1.558500e-01

Joint ci ratio: 5.757567e-02	ci left: 1.299666e-01	ci right 1.377045e-01	k: 4014	n:30000
Cons ci ratio: 1.057633e-02	ci left: 8.163788e-01	ci right 8.250923e-01	k: 24623	n:30000
KS ci ratio: 8.315383e-02	ci left: 6.609174e-02	ci right 7.185874e-02	k: 2068	n:30000
SIN3B   30000 perm   7 sec   (4539 perm/sec)   p_kst 6.893333e-02   p_cons 8.207667e-01   p_joint 1.338000e-01

Outputting figure to mutsig2_images.part000000000157/SIN3B.4_3569_30000_0.068933_0.82077_0.1338.png
                gene_name: SIN3B
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 61 percent done.
SIRPB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.292716e-01	ci left: 2.513779e-02	ci right 3.174074e-02	k: 283	n:10000
Cons ci ratio: 3.370417e-02	ci left: 5.651401e-01	ci right 5.846162e-01	k: 5749	n:10000
KS ci ratio: 5.369981e-01	ci left: 3.885975e-03	ci right 6.813584e-03	k: 52	n:10000
SIRPB1   10000 perm   2 sec   (5728 perm/sec)   p_kst 5.200000e-03   p_cons 5.749000e-01   p_joint 2.830000e-02

Joint ci ratio: 2.269270e-01	ci left: 1.303072e-02	ci right 1.641252e-02	k: 293	n:20000
Cons ci ratio: 2.370734e-02	ci left: 5.706184e-01	ci right 5.843591e-01	k: 11550	n:20000
KS ci ratio: 3.744341e-01	ci left: 4.431766e-03	ci right 6.515982e-03	k: 108	n:20000
SIRPB1   20000 perm   4 sec   (5145 perm/sec)   p_kst 5.400000e-03   p_cons 5.775000e-01   p_joint 1.465000e-02

Joint ci ratio: 1.391621e-01	ci left: 2.397097e-02	ci right 2.758833e-02	k: 772	n:30000
Cons ci ratio: 2.021553e-02	ci left: 5.505560e-01	ci right 5.618331e-01	k: 16686	n:30000
KS ci ratio: 2.971666e-01	ci left: 4.910451e-03	ci right 6.654022e-03	k: 172	n:30000
SIRPB1   30000 perm   6 sec   (4929 perm/sec)   p_kst 5.733333e-03   p_cons 5.562000e-01   p_joint 2.573333e-02

Joint ci ratio: 1.319114e-01	ci left: 2.017348e-02	ci right 2.304655e-02	k: 863	n:40000
Cons ci ratio: 1.744803e-02	ci left: 5.529915e-01	ci right 5.627501e-01	k: 22315	n:40000
KS ci ratio: 2.605941e-01	ci left: 4.892283e-03	ci right 6.380868e-03	k: 224	n:40000
SIRPB1   40000 perm   8 sec   (4779 perm/sec)   p_kst 5.600000e-03   p_cons 5.578750e-01   p_joint 2.157500e-02

Joint ci ratio: 1.054789e-01	ci left: 2.546041e-02	ci right 2.831488e-02	k: 1343	n:50000
Cons ci ratio: 1.562239e-02	ci left: 5.529931e-01	ci right 5.617202e-01	k: 27868	n:50000
KS ci ratio: 2.336056e-01	ci left: 4.945911e-03	ci right 6.272480e-03	k: 279	n:50000
SIRPB1   50000 perm   11 sec   (4669 perm/sec)   p_kst 5.580000e-03   p_cons 5.573600e-01   p_joint 2.686000e-02

Joint ci ratio: 9.949866e-02	ci left: 2.396058e-02	ci right 2.648563e-02	k: 1512	n:60000
Cons ci ratio: 1.428616e-02	ci left: 5.525139e-01	ci right 5.604807e-01	k: 33390	n:60000
KS ci ratio: 2.135720e-01	ci left: 4.987021e-03	ci right 6.194892e-03	k: 334	n:60000
SIRPB1   60000 perm   13 sec   (4569 perm/sec)   p_kst 5.566667e-03   p_cons 5.565000e-01   p_joint 2.520000e-02

Joint ci ratio: 1.007077e-01	ci left: 2.011775e-02	ci right 2.226505e-02	k: 1482	n:70000
Cons ci ratio: 1.321077e-02	ci left: 5.533965e-01	ci right 5.607702e-01	k: 38996	n:70000
KS ci ratio: 2.005438e-01	ci left: 4.884113e-03	ci right 5.986065e-03	k: 379	n:70000
SIRPB1   70000 perm   16 sec   (4481 perm/sec)   p_kst 5.414286e-03   p_cons 5.570857e-01   p_joint 2.117143e-02

Joint ci ratio: 9.027768e-02	ci left: 2.198454e-02	ci right 2.407525e-02	k: 1841	n:80000
Cons ci ratio: 1.234563e-02	ci left: 5.541125e-01	ci right 5.610083e-01	k: 44605	n:80000
KS ci ratio: 1.855169e-01	ci left: 5.035022e-03	ci right 6.076329e-03	k: 443	n:80000
SIRPB1   80000 perm   18 sec   (4394 perm/sec)   p_kst 5.537500e-03   p_cons 5.575625e-01   p_joint 2.301250e-02

Joint ci ratio: 8.632152e-02	ci left: 2.143220e-02	ci right 2.337653e-02	k: 2015	n:90000
Cons ci ratio: 1.165340e-02	ci left: 5.537251e-01	ci right 5.602268e-01	k: 50128	n:90000
KS ci ratio: 1.742941e-01	ci left: 5.101646e-03	ci right 6.086188e-03	k: 502	n:90000
SIRPB1   90000 perm   21 sec   (4314 perm/sec)   p_kst 5.577778e-03   p_cons 5.569778e-01   p_joint 2.238889e-02

Joint ci ratio: 7.906714e-02	ci left: 2.304062e-02	ci right 2.494713e-02	k: 2398	n:100000
Cons ci ratio: 1.106005e-02	ci left: 5.536845e-01	ci right 5.598523e-01	k: 55677	n:100000
KS ci ratio: 1.656317e-01	ci left: 5.108523e-03	ci right 6.040508e-03	k: 556	n:100000
SIRPB1   100000 perm   24 sec   (4235 perm/sec)   p_kst 5.560000e-03   p_cons 5.567700e-01   p_joint 2.398000e-02

Joint ci ratio: 7.878693e-02	ci left: 2.114125e-02	ci right 2.288408e-02	k: 2420	n:110000
Cons ci ratio: 1.055579e-02	ci left: 5.533398e-01	ci right 5.592208e-01	k: 61191	n:110000
KS ci ratio: 1.572412e-01	ci left: 5.176278e-03	ci right 6.068274e-03	k: 617	n:110000
SIRPB1   110000 perm   26 sec   (4163 perm/sec)   p_kst 5.609091e-03   p_cons 5.562818e-01   p_joint 2.200000e-02

Joint ci ratio: 7.001304e-02	ci left: 2.456626e-02	ci right 2.635677e-02	k: 3054	n:120000
Cons ci ratio: 1.010860e-02	ci left: 5.533585e-01	ci right 5.589888e-01	k: 66741	n:120000
KS ci ratio: 1.505675e-01	ci left: 5.193625e-03	ci right 6.047201e-03	k: 673	n:120000
SIRPB1   120000 perm   29 sec   (4098 perm/sec)   p_kst 5.608333e-03   p_cons 5.561750e-01   p_joint 2.545000e-02

Joint ci ratio: 7.343962e-02	ci left: 2.065795e-02	ci right 2.224042e-02	k: 2787	n:130000
Cons ci ratio: 9.716085e-03	ci left: 5.532633e-01	ci right 5.586727e-01	k: 72276	n:130000
KS ci ratio: 1.439846e-01	ci left: 5.260891e-03	ci right 6.084472e-03	k: 736	n:130000
SIRPB1   130000 perm   32 sec   (4029 perm/sec)   p_kst 5.661538e-03   p_cons 5.559692e-01   p_joint 2.143846e-02

Joint ci ratio: 6.358690e-02	ci left: 2.558754e-02	ci right 2.727500e-02	k: 3699	n:140000
Cons ci ratio: 9.352735e-03	ci left: 5.538858e-01	ci right 5.590976e-01	k: 77909	n:140000
KS ci ratio: 1.387201e-01	ci left: 5.277863e-03	ci right 6.071393e-03	k: 793	n:140000
SIRPB1   140000 perm   35 sec   (3960 perm/sec)   p_kst 5.664286e-03   p_cons 5.564929e-01   p_joint 2.642143e-02

Joint ci ratio: 5.855270e-02	ci left: 2.816315e-02	ci right 2.986845e-02	k: 4351	n:150000
Cons ci ratio: 9.043287e-03	ci left: 5.535546e-01	ci right 5.585899e-01	k: 83411	n:150000
KS ci ratio: 1.349540e-01	ci left: 5.215724e-03	ci right 5.976912e-03	k: 838	n:150000
SIRPB1   150000 perm   39 sec   (3895 perm/sec)   p_kst 5.586667e-03   p_cons 5.560733e-01   p_joint 2.900667e-02

Joint ci ratio: 5.098364e-02	ci left: 3.472208e-02	ci right 3.654479e-02	k: 5700	n:160000
Cons ci ratio: 8.751003e-03	ci left: 5.539240e-01	ci right 5.587989e-01	k: 89018	n:160000
KS ci ratio: 1.294333e-01	ci left: 5.330927e-03	ci right 6.074657e-03	k: 911	n:160000
SIRPB1   160000 perm   42 sec   (3831 perm/sec)   p_kst 5.693750e-03   p_cons 5.563625e-01   p_joint 3.562500e-02

Joint ci ratio: 4.708727e-02	ci left: 3.824749e-02	ci right 4.009768e-02	k: 6658	n:170000
Cons ci ratio: 8.491001e-03	ci left: 5.539227e-01	ci right 5.586519e-01	k: 94569	n:170000
KS ci ratio: 1.256340e-01	ci left: 5.336247e-03	ci right 6.057238e-03	k: 967	n:170000
SIRPB1   170000 perm   45 sec   (3744 perm/sec)   p_kst 5.688235e-03   p_cons 5.562882e-01   p_joint 3.916471e-02

Joint ci ratio: 4.559498e-02	ci left: 3.854438e-02	ci right 4.034827e-02	k: 7099	n:180000
Cons ci ratio: 8.252412e-03	ci left: 5.539512e-01	ci right 5.585470e-01	k: 100125	n:180000
KS ci ratio: 1.228159e-01	ci left: 5.282011e-03	ci right 5.978501e-03	k: 1012	n:180000
SIRPB1   180000 perm   49 sec   (3688 perm/sec)   p_kst 5.622222e-03   p_cons 5.562500e-01   p_joint 3.943889e-02

Joint ci ratio: 4.608430e-02	ci left: 3.583818e-02	ci right 3.753389e-02	k: 6969	n:190000
Cons ci ratio: 8.026361e-03	ci left: 5.543785e-01	ci right 5.588513e-01	k: 105757	n:190000
KS ci ratio: 1.189420e-01	ci left: 5.345991e-03	ci right 6.027119e-03	k: 1079	n:190000
SIRPB1   190000 perm   52 sec   (3635 perm/sec)   p_kst 5.678947e-03   p_cons 5.566158e-01   p_joint 3.667895e-02

Joint ci ratio: 4.719074e-02	ci left: 3.256243e-02	ci right 3.414113e-02	k: 6669	n:200000
Cons ci ratio: 7.823620e-03	ci left: 5.544045e-01	ci right 5.587639e-01	k: 111317	n:200000
KS ci ratio: 1.158198e-01	ci left: 5.365033e-03	ci right 6.029417e-03	k: 1138	n:200000
SIRPB1   200000 perm   56 sec   (3581 perm/sec)   p_kst 5.690000e-03   p_cons 5.565850e-01   p_joint 3.334500e-02

Joint ci ratio: 5.515283e-02	ci left: 2.284221e-02	ci right 2.414242e-02	k: 4932	n:210000
Cons ci ratio: 7.636020e-03	ci left: 5.543959e-01	ci right 5.586502e-01	k: 116870	n:210000
KS ci ratio: 1.074727e-01	ci left: 5.956774e-03	ci right 6.637914e-03	k: 1321	n:210000
SIRPB1   210000 perm   59 sec   (3534 perm/sec)   p_kst 6.290476e-03   p_cons 5.565238e-01   p_joint 2.348571e-02

Joint ci ratio: 5.325449e-02	ci left: 2.339587e-02	ci right 2.468035e-02	k: 5287	n:220000
Cons ci ratio: 7.454705e-03	ci left: 5.548258e-01	ci right 5.589818e-01	k: 122519	n:220000
KS ci ratio: 1.048856e-01	ci left: 5.978048e-03	ci right 6.644151e-03	k: 1387	n:220000
SIRPB1   220000 perm   63 sec   (3490 perm/sec)   p_kst 6.304545e-03   p_cons 5.569045e-01   p_joint 2.403182e-02

Joint ci ratio: 5.062224e-02	ci left: 2.476510e-02	ci right 2.605559e-02	k: 5843	n:230000
Cons ci ratio: 7.287511e-03	ci left: 5.550975e-01	ci right 5.591619e-01	k: 128140	n:230000
KS ci ratio: 1.020890e-01	ci left: 6.044261e-03	ci right 6.698707e-03	k: 1464	n:230000
SIRPB1   230000 perm   67 sec   (3447 perm/sec)   p_kst 6.365217e-03   p_cons 5.571304e-01   p_joint 2.540435e-02

Joint ci ratio: 4.963615e-02	ci left: 2.470009e-02	ci right 2.596141e-02	k: 6078	n:240000
Cons ci ratio: 7.134996e-03	ci left: 5.550766e-01	ci right 5.590554e-01	k: 133696	n:240000
KS ci ratio: 1.001936e-01	ci left: 6.019844e-03	ci right 6.658833e-03	k: 1520	n:240000
SIRPB1   240000 perm   70 sec   (3405 perm/sec)   p_kst 6.333333e-03   p_cons 5.570667e-01   p_joint 2.532500e-02

Joint ci ratio: 5.761482e-02	ci left: 1.765594e-02	ci right 1.870728e-02	k: 4544	n:250000
Cons ci ratio: 6.992296e-03	ci left: 5.550141e-01	ci right 5.589125e-01	k: 139241	n:250000
KS ci ratio: 9.814981e-02	ci left: 6.028702e-03	ci right 6.654826e-03	k: 1584	n:250000
SIRPB1   250000 perm   74 sec   (3363 perm/sec)   p_kst 6.336000e-03   p_cons 5.569640e-01   p_joint 1.817600e-02

Outputting figure to mutsig2_images.part000000000157/SIRPB1.4_2354_250000_0.006336_0.55696_0.018176.png
                gene_name: SIRPB1
               theta_stop: 0.098 
                    nperm: 250000 
                     p_ks: 0.0063 
        ci_ks_bounds_left: 0.0060 
       ci_ks_bounds_right: 0.0067 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 62 percent done.
SH3BP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.415757e-01	ci left: 6.613851e-02	ci right 7.631298e-02	k: 711	n:10000
Cons ci ratio: 1.985870e-01	ci left: 3.376644e-02	ci right 4.130605e-02	k: 374	n:10000
KS ci ratio: 4.908768e-02	ci left: 3.797268e-01	ci right 3.989377e-01	k: 3893	n:10000
SH3BP4   10000 perm   2 sec   (5576 perm/sec)   p_kst 3.893000e-01   p_cons 3.740000e-02   p_joint 7.110000e-02

Joint ci ratio: 1.098083e-01	ci left: 5.660168e-02	ci right 6.322698e-02	k: 1197	n:20000
Cons ci ratio: 1.427146e-01	ci left: 3.375046e-02	ci right 3.898544e-02	k: 726	n:20000
KS ci ratio: 3.522641e-02	ci left: 3.756075e-01	ci right 3.891267e-01	k: 7647	n:20000
SH3BP4   20000 perm   4 sec   (4968 perm/sec)   p_kst 3.823500e-01   p_cons 3.630000e-02   p_joint 5.985000e-02

Joint ci ratio: 6.433141e-02	ci left: 1.065792e-01	ci right 1.136965e-01	k: 3303	n:30000
Cons ci ratio: 1.172259e-01	ci left: 3.382317e-02	ci right 3.806732e-02	k: 1077	n:30000
KS ci ratio: 2.865894e-02	ci left: 3.785577e-01	ci right 3.895981e-01	k: 11522	n:30000
SH3BP4   30000 perm   6 sec   (4762 perm/sec)   p_kst 3.840667e-01   p_cons 3.590000e-02   p_joint 1.101000e-01

Joint ci ratio: 5.055302e-02	ci left: 1.273617e-01	ci right 1.339920e-01	k: 5226	n:40000
Cons ci ratio: 9.888669e-02	ci left: 3.592777e-02	ci right 3.968971e-02	k: 1511	n:40000
KS ci ratio: 2.478005e-02	ci left: 3.800529e-01	ci right 3.896139e-01	k: 15393	n:40000
SH3BP4   40000 perm   9 sec   (4631 perm/sec)   p_kst 3.848250e-01   p_cons 3.777500e-02   p_joint 1.306500e-01

Outputting figure to mutsig2_images.part000000000157/SH3BP4.3_2908_40000_0.38482_0.037775_0.13065.png
                gene_name: SH3BP4
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 64 percent done.
SH3BP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.040405e-02	ci left: 4.749603e-01	ci right 4.946485e-01	k: 4848	n:10000
Cons ci ratio: 7.270890e-02	ci left: 2.169452e-01	ci right 2.334152e-01	k: 2251	n:10000
KS ci ratio: 5.431310e-02	ci left: 3.330967e-01	ci right 3.517951e-01	k: 3424	n:10000
SH3BP5   10000 perm   2 sec   (6044 perm/sec)   p_kst 3.424000e-01   p_cons 2.251000e-01   p_joint 4.848000e-01

Outputting figure to mutsig2_images.part000000000157/SH3BP5.3_1404_10000_0.3424_0.2251_0.4848.png
                gene_name: SH3BP5
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 66 percent done.
SH3BP5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.413363e-02	ci left: 2.103351e-01	ci right 2.266292e-01	k: 2184	n:10000
Cons ci ratio: 7.415534e-02	ci left: 2.102365e-01	ci right 2.265279e-01	k: 2183	n:10000
KS ci ratio: 9.568773e-02	ci left: 1.367812e-01	ci right 1.506270e-01	k: 1436	n:10000
SH3BP5L   10000 perm   2 sec   (6291 perm/sec)   p_kst 1.436000e-01   p_cons 2.183000e-01   p_joint 2.184000e-01

Outputting figure to mutsig2_images.part000000000157/SH3BP5L.3_1206_10000_0.1436_0.2183_0.2184.png
                gene_name: SH3BP5L
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 67 percent done.
SH3RF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.745976e-02	ci left: 3.083805e-01	ci right 3.267259e-01	k: 3175	n:10000
Cons ci ratio: 1.122343e-02	ci left: 9.189410e-01	ci right 9.294103e-01	k: 9243	n:10000
KS ci ratio: 7.582348e-02	ci left: 2.028409e-01	ci right 2.189279e-01	k: 2108	n:10000
SH3RF1   10000 perm   2 sec   (5437 perm/sec)   p_kst 2.108000e-01   p_cons 9.243000e-01   p_joint 3.175000e-01

Outputting figure to mutsig2_images.part000000000157/SH3RF1.3_2711_10000_0.2108_0.9243_0.3175.png
                gene_name: SH3RF1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 69 percent done.
SHANK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.260489e-02	ci left: 2.174386e-01	ci right 2.339215e-01	k: 2256	n:10000
Cons ci ratio: 8.552514e-02	ci left: 1.661239e-01	ci right 1.810667e-01	k: 1735	n:10000
KS ci ratio: 5.672566e-02	ci left: 3.139366e-01	ci right 3.323665e-01	k: 3231	n:10000
SHANK3   10000 perm   2 sec   (4706 perm/sec)   p_kst 3.231000e-01   p_cons 1.735000e-01   p_joint 2.256000e-01

Outputting figure to mutsig2_images.part000000000157/SHANK3.3_5336_10000_0.3231_0.1735_0.2256.png
                gene_name: SHANK3
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 70 percent done.
SHC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.483523e-02	ci left: 2.071791e-01	ci right 2.233870e-01	k: 2152	n:10000
Cons ci ratio: 1.761010e-02	ci left: 8.246276e-01	ci right 8.393784e-01	k: 8321	n:10000
KS ci ratio: 1.204951e-01	ci left: 8.990526e-02	ci right 1.015315e-01	k: 956	n:10000
SHC1   10000 perm   2 sec   (6092 perm/sec)   p_kst 9.560000e-02   p_cons 8.321000e-01   p_joint 2.152000e-01

Joint ci ratio: 5.426872e-02	ci left: 2.012544e-01	ci right 2.125310e-01	k: 4137	n:20000
Cons ci ratio: 1.300917e-02	ci left: 8.140985e-01	ci right 8.248085e-01	k: 16390	n:20000
KS ci ratio: 8.278669e-02	ci left: 9.661171e-02	ci right 1.050047e-01	k: 2015	n:20000
SHC1   20000 perm   4 sec   (5449 perm/sec)   p_kst 1.007500e-01   p_cons 8.195000e-01   p_joint 2.068500e-01

Outputting figure to mutsig2_images.part000000000157/SHC1.3_1803_20000_0.10075_0.8195_0.20685.png
                gene_name: SHC1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 72 percent done.
SHF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.108706e-01	ci left: 2.986994e-02	ci right 3.700523e-02	k: 333	n:10000
Cons ci ratio: 3.389164e-01	ci left: 1.096414e-02	ci right 1.552595e-02	k: 131	n:10000
KS ci ratio: 3.495467e-02	ci left: 5.471986e-01	ci right 5.667681e-01	k: 5570	n:10000
SHF   10000 perm   1 sec   (6823 perm/sec)   p_kst 5.570000e-01   p_cons 1.310000e-02   p_joint 3.330000e-02

Joint ci ratio: 9.480375e-02	ci left: 7.500461e-02	ci right 8.251839e-02	k: 1574	n:20000
Cons ci ratio: 2.419888e-01	ci left: 1.138222e-02	ci right 1.456171e-02	k: 258	n:20000
KS ci ratio: 2.485125e-02	ci left: 5.474291e-01	ci right 5.612551e-01	k: 11087	n:20000
SHF   20000 perm   3 sec   (6015 perm/sec)   p_kst 5.543500e-01   p_cons 1.290000e-02   p_joint 7.870000e-02

Joint ci ratio: 8.447700e-02	ci left: 6.413080e-02	ci right 6.982008e-02	k: 2008	n:30000
Cons ci ratio: 2.003455e-01	ci left: 1.133685e-02	ci right 1.389217e-02	k: 377	n:30000
KS ci ratio: 2.015691e-02	ci left: 5.519911e-01	ci right 5.632644e-01	k: 16729	n:30000
SHF   30000 perm   5 sec   (5707 perm/sec)   p_kst 5.576333e-01   p_cons 1.256667e-02   p_joint 6.693333e-02

Joint ci ratio: 7.935203e-02	ci left: 5.521380e-02	ci right 5.980070e-02	k: 2299	n:40000
Cons ci ratio: 1.747381e-01	ci left: 1.133853e-02	ci right 1.353310e-02	k: 496	n:40000
KS ci ratio: 1.740563e-02	ci left: 5.541928e-01	ci right 5.639487e-01	k: 22363	n:40000
SHF   40000 perm   7 sec   (5510 perm/sec)   p_kst 5.590750e-01   p_cons 1.240000e-02   p_joint 5.747500e-02

Joint ci ratio: 6.920432e-02	ci left: 5.820941e-02	ci right 6.240182e-02	k: 3014	n:50000
Cons ci ratio: 1.550634e-01	ci left: 1.164070e-02	ci right 1.361649e-02	k: 630	n:50000
KS ci ratio: 1.552574e-02	ci left: 5.560561e-01	ci right 5.647769e-01	k: 28021	n:50000
SHF   50000 perm   9 sec   (5351 perm/sec)   p_kst 5.604200e-01   p_cons 1.260000e-02   p_joint 6.028000e-02

Joint ci ratio: 4.922196e-02	ci left: 9.324200e-02	ci right 9.796387e-02	k: 5735	n:60000
Cons ci ratio: 1.294630e-01	ci left: 1.407484e-02	ci right 1.603914e-02	k: 902	n:60000
KS ci ratio: 1.417267e-02	ci left: 5.564507e-01	ci right 5.644101e-01	k: 33626	n:60000
SHF   60000 perm   12 sec   (5209 perm/sec)   p_kst 5.604333e-01   p_cons 1.503333e-02   p_joint 9.558333e-02

Joint ci ratio: 4.732306e-02	ci left: 8.715494e-02	ci right 9.139347e-02	k: 6248	n:70000
Cons ci ratio: 1.196005e-01	ci left: 1.420959e-02	ci right 1.603093e-02	k: 1057	n:70000
KS ci ratio: 1.313978e-02	ci left: 5.560559e-01	ci right 5.634249e-01	k: 39182	n:70000
SHF   70000 perm   14 sec   (5086 perm/sec)   p_kst 5.597429e-01   p_cons 1.510000e-02   p_joint 8.925714e-02

Joint ci ratio: 4.427253e-02	ci left: 8.727066e-02	ci right 9.123419e-02	k: 7139	n:80000
Cons ci ratio: 1.117422e-01	ci left: 1.430277e-02	ci right 1.600765e-02	k: 1211	n:80000
KS ci ratio: 1.231969e-02	ci left: 5.551508e-01	ci right 5.620450e-01	k: 44688	n:80000
SHF   80000 perm   16 sec   (4968 perm/sec)   p_kst 5.586000e-01   p_cons 1.513750e-02   p_joint 8.923750e-02

Joint ci ratio: 3.786725e-02	ci left: 1.043816e-01	ci right 1.084216e-01	k: 9575	n:90000
Cons ci ratio: 1.047102e-01	ci left: 1.452984e-02	ci right 1.614607e-02	k: 1379	n:90000
KS ci ratio: 1.159552e-02	ci left: 5.561825e-01	ci right 5.626804e-01	k: 50349	n:90000
SHF   90000 perm   18 sec   (4867 perm/sec)   p_kst 5.594333e-01   p_cons 1.532222e-02   p_joint 1.063889e-01

Joint ci ratio: 3.954753e-02	ci left: 8.768808e-02	ci right 9.123578e-02	k: 8945	n:100000
Cons ci ratio: 9.863149e-02	ci left: 1.478247e-02	ci right 1.632582e-02	k: 1554	n:100000
KS ci ratio: 1.099544e-02	ci left: 5.565765e-01	ci right 5.627401e-01	k: 55966	n:100000
SHF   100000 perm   21 sec   (4770 perm/sec)   p_kst 5.596600e-01   p_cons 1.554000e-02   p_joint 8.945000e-02

Outputting figure to mutsig2_images.part000000000157/SHF.3_1300_100000_0.55966_0.01554_0.08945.png
                gene_name: SHF
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.091 

Current progress: 73 percent done.
SIGLEC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.827749e-02	ci left: 6.483055e-01	ci right 6.670026e-01	k: 6577	n:10000
Cons ci ratio: 2.766457e-02	ci left: 6.581687e-01	ci right 6.767337e-01	k: 6675	n:10000
KS ci ratio: 4.173737e-02	ci left: 4.587799e-01	ci right 4.784384e-01	k: 4686	n:10000
SIGLEC5   10000 perm   2 sec   (6230 perm/sec)   p_kst 4.686000e-01   p_cons 6.675000e-01   p_joint 6.577000e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC5.3_1692_10000_0.4686_0.6675_0.6577.png
                gene_name: SIGLEC5
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 75 percent done.
SIL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.857514e-03	ci left: 9.471062e-01	ci right 9.556284e-01	k: 9515	n:10000
KS ci ratio: 2.045457e-02	ci left: 7.778289e-01	ci right 7.940042e-01	k: 7860	n:10000
SIL1   10000 perm   2 sec   (6302 perm/sec)   p_kst 7.860000e-01   p_cons 9.515000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SIL1.3_1422_10000_0.786_0.9515_1.png
                gene_name: SIL1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
SILV
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.702498e-02	ci left: 4.002380e-01	ci right 4.196145e-01	k: 4099	n:10000
Cons ci ratio: 3.175713e-02	ci left: 5.940342e-01	ci right 6.133054e-01	k: 6037	n:10000
KS ci ratio: 5.686859e-02	ci left: 3.128451e-01	ci right 3.312586e-01	k: 3220	n:10000
SILV   10000 perm   2 sec   (5806 perm/sec)   p_kst 3.220000e-01   p_cons 6.037000e-01   p_joint 4.099000e-01

Outputting figure to mutsig2_images.part000000000157/SILV.3_2030_10000_0.322_0.6037_0.4099.png
                gene_name: SILV
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 78 percent done.
SIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.214905e-02	ci left: 7.494812e-01	ci right 7.663683e-01	k: 7580	n:10000
Cons ci ratio: 9.015130e-02	ci left: 1.517848e-01	ci right 1.662144e-01	k: 1589	n:10000
KS ci ratio: 2.974911e-02	ci left: 6.249733e-01	ci right 6.439483e-01	k: 6345	n:10000
SIP1   10000 perm   2 sec   (6571 perm/sec)   p_kst 6.345000e-01   p_cons 1.589000e-01   p_joint 7.580000e-01

Outputting figure to mutsig2_images.part000000000157/SIP1.3_883_10000_0.6345_0.1589_0.758.png
                gene_name: SIP1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 80 percent done.
SH3D19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
Cons ci ratio: 1.076335e-01	ci left: 1.107625e-01	ci right 1.234615e-01	k: 1170	n:10000
KS ci ratio: 4.055801e-02	ci left: 4.730621e-01	ci right 4.927479e-01	k: 4829	n:10000
SH3D19   10000 perm   2 sec   (5582 perm/sec)   p_kst 4.829000e-01   p_cons 1.170000e-01   p_joint 1.890000e-01

Joint ci ratio: 7.270505e-02	ci left: 1.222671e-01	ci right 1.315416e-01	k: 2537	n:20000
Cons ci ratio: 7.458496e-02	ci left: 1.168056e-01	ci right 1.259048e-01	k: 2426	n:20000
KS ci ratio: 2.864093e-02	ci left: 4.766520e-01	ci right 4.905528e-01	k: 9672	n:20000
SH3D19   20000 perm   4 sec   (5194 perm/sec)   p_kst 4.836000e-01   p_cons 1.213000e-01   p_joint 1.268500e-01

Outputting figure to mutsig2_images.part000000000157/SH3D19.2_2433_20000_0.4836_0.1213_0.12685.png
                gene_name: SH3D19
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 81 percent done.
SH3GL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.576124e-03	ci left: 9.501268e-01	ci right 9.584059e-01	k: 9544	n:10000
Cons ci ratio: 2.136378e-02	ci left: 7.626362e-01	ci right 7.792057e-01	k: 7710	n:10000
KS ci ratio: 6.677346e-02	ci left: 2.476661e-01	ci right 2.648761e-01	k: 2562	n:10000
SH3GL2   10000 perm   1 sec   (6726 perm/sec)   p_kst 2.562000e-01   p_cons 7.710000e-01   p_joint 9.544000e-01

Outputting figure to mutsig2_images.part000000000157/SH3GL2.2_1095_10000_0.2562_0.771_0.9544.png
                gene_name: SH3GL2
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 83 percent done.
SH3GLB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.097680e-01	ci left: 1.068582e-01	ci right 1.193681e-01	k: 1130	n:10000
Cons ci ratio: 2.556943e-02	ci left: 6.924235e-01	ci right 7.104591e-01	k: 7015	n:10000
KS ci ratio: 3.805205e-01	ci left: 8.505237e-03	ci right 1.258745e-02	k: 104	n:10000
SH3GLB2   10000 perm   1 sec   (6675 perm/sec)   p_kst 1.040000e-02   p_cons 7.015000e-01   p_joint 1.130000e-01

Joint ci ratio: 9.473848e-02	ci left: 7.510243e-02	ci right 8.262055e-02	k: 1576	n:20000
Cons ci ratio: 1.828608e-02	ci left: 6.903263e-01	ci right 7.031165e-01	k: 13935	n:20000
KS ci ratio: 2.634284e-01	ci left: 9.507427e-03	ci right 1.243735e-02	k: 218	n:20000
SH3GLB2   20000 perm   3 sec   (5887 perm/sec)   p_kst 1.090000e-02   p_cons 6.967500e-01   p_joint 7.880000e-02

Joint ci ratio: 7.961428e-02	ci left: 7.178233e-02	ci right 7.776700e-02	k: 2242	n:30000
Cons ci ratio: 1.490770e-02	ci left: 6.921661e-01	ci right 7.025957e-01	k: 20922	n:30000
KS ci ratio: 2.092127e-01	ci left: 1.035593e-02	ci right 1.280670e-02	k: 346	n:30000
SH3GLB2   30000 perm   5 sec   (5611 perm/sec)   p_kst 1.153333e-02   p_cons 6.974000e-01   p_joint 7.473333e-02

Joint ci ratio: 6.134526e-02	ci left: 8.977646e-02	ci right 9.548284e-02	k: 3704	n:40000
Cons ci ratio: 1.288222e-02	ci left: 6.938003e-01	ci right 7.028209e-01	k: 27933	n:40000
KS ci ratio: 1.807237e-01	ci left: 1.057374e-02	ci right 1.269805e-02	k: 464	n:40000
SH3GLB2   40000 perm   7 sec   (5416 perm/sec)   p_kst 1.160000e-02   p_cons 6.983250e-01   p_joint 9.260000e-02

Joint ci ratio: 3.587959e-02	ci left: 1.892507e-01	ci right 1.961850e-01	k: 9635	n:50000
Cons ci ratio: 1.153332e-02	ci left: 6.938740e-01	ci right 7.019431e-01	k: 34896	n:50000
KS ci ratio: 1.625310e-01	ci left: 1.056470e-02	ci right 1.245265e-02	k: 574	n:50000
SH3GLB2   50000 perm   10 sec   (5263 perm/sec)   p_kst 1.148000e-02   p_cons 6.979200e-01   p_joint 1.927000e-01

Joint ci ratio: 3.425757e-02	ci left: 1.760557e-01	ci right 1.822087e-01	k: 10747	n:60000
Cons ci ratio: 1.053145e-02	ci left: 6.941078e-01	ci right 7.014731e-01	k: 41868	n:60000
KS ci ratio: 1.468701e-01	ci left: 1.087099e-02	ci right 1.261005e-02	k: 703	n:60000
SH3GLB2   60000 perm   12 sec   (5127 perm/sec)   p_kst 1.171667e-02   p_cons 6.978000e-01   p_joint 1.791167e-01

Joint ci ratio: 3.163852e-02	ci left: 1.770039e-01	ci right 1.827083e-01	k: 12589	n:70000
Cons ci ratio: 9.741984e-03	ci left: 6.947412e-01	ci right 7.015567e-01	k: 48871	n:70000
KS ci ratio: 1.365090e-01	ci left: 1.084754e-02	ci right 1.245047e-02	k: 814	n:70000
SH3GLB2   70000 perm   14 sec   (4989 perm/sec)   p_kst 1.162857e-02   p_cons 6.981571e-01   p_joint 1.798429e-01

Joint ci ratio: 4.114754e-02	ci left: 9.978715e-02	ci right 1.039918e-01	k: 8150	n:80000
Cons ci ratio: 9.117550e-03	ci left: 6.947424e-01	ci right 7.011182e-01	k: 55835	n:80000
KS ci ratio: 1.298559e-01	ci left: 1.053068e-02	ci right 1.200509e-02	k: 900	n:80000
SH3GLB2   80000 perm   16 sec   (4872 perm/sec)   p_kst 1.125000e-02   p_cons 6.979375e-01   p_joint 1.018750e-01

Joint ci ratio: 3.766945e-02	ci left: 1.053733e-01	ci right 1.094298e-01	k: 9665	n:90000
Cons ci ratio: 8.610474e-03	ci left: 6.942197e-01	ci right 7.002342e-01	k: 62751	n:90000
KS ci ratio: 1.229595e-01	ci left: 1.047961e-02	ci right 1.186327e-02	k: 1004	n:90000
SH3GLB2   90000 perm   19 sec   (4766 perm/sec)   p_kst 1.115556e-02   p_cons 6.972333e-01   p_joint 1.073889e-01

Joint ci ratio: 3.563981e-02	ci left: 1.059934e-01	ci right 1.098494e-01	k: 10791	n:100000
Cons ci ratio: 8.154174e-03	ci left: 6.951236e-01	ci right 7.008249e-01	k: 69798	n:100000
KS ci ratio: 1.167379e-01	ci left: 1.049869e-02	ci right 1.180989e-02	k: 1114	n:100000
SH3GLB2   100000 perm   21 sec   (4671 perm/sec)   p_kst 1.114000e-02   p_cons 6.979800e-01   p_joint 1.079100e-01

Joint ci ratio: 4.599719e-02	ci left: 6.050996e-02	ci right 6.336774e-02	k: 6812	n:110000
Cons ci ratio: 7.779365e-03	ci left: 6.950036e-01	ci right 7.004405e-01	k: 76750	n:110000
KS ci ratio: 1.121638e-01	ci left: 1.036548e-02	ci right 1.160596e-02	k: 1207	n:110000
SH3GLB2   110000 perm   24 sec   (4576 perm/sec)   p_kst 1.097273e-02   p_cons 6.977273e-01   p_joint 6.192727e-02

Joint ci ratio: 3.248033e-02	ci left: 1.064809e-01	ci right 1.100048e-01	k: 12988	n:120000
Cons ci ratio: 7.442774e-03	ci left: 6.954268e-01	ci right 7.006303e-01	k: 83764	n:120000
KS ci ratio: 1.075464e-01	ci left: 1.036076e-02	ci right 1.154639e-02	k: 1313	n:120000
SH3GLB2   120000 perm   27 sec   (4487 perm/sec)   p_kst 1.094167e-02   p_cons 6.980333e-01   p_joint 1.082333e-01

Joint ci ratio: 3.088028e-02	ci left: 1.085791e-01	ci right 1.119922e-01	k: 14336	n:130000
Cons ci ratio: 7.137004e-03	ci left: 6.963441e-01	ci right 7.013393e-01	k: 90850	n:130000
KS ci ratio: 1.031990e-01	ci left: 1.041011e-02	ci right 1.155032e-02	k: 1426	n:130000
SH3GLB2   130000 perm   30 sec   (4404 perm/sec)   p_kst 1.096923e-02   p_cons 6.988462e-01   p_joint 1.102769e-01

Joint ci ratio: 3.778820e-02	ci left: 7.002819e-02	ci right 7.273245e-02	k: 9992	n:140000
Cons ci ratio: 6.875695e-03	ci left: 6.965395e-01	ci right 7.013523e-01	k: 97853	n:140000
KS ci ratio: 9.943756e-02	ci left: 1.043235e-02	ci right 1.153091e-02	k: 1536	n:140000
SH3GLB2   140000 perm   32 sec   (4325 perm/sec)   p_kst 1.097143e-02   p_cons 6.989500e-01   p_joint 7.137143e-02

Outputting figure to mutsig2_images.part000000000157/SH3GLB2.2_1232_140000_0.010971_0.69895_0.071371.png
                gene_name: SH3GLB2
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.073 

Current progress: 84 percent done.
SHANK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.072269e-03	ci left: 9.553457e-01	ci right 9.631839e-01	k: 9594	n:10000
Cons ci ratio: 1.110282e-02	ci left: 9.204880e-01	ci right 9.308624e-01	k: 9258	n:10000
KS ci ratio: 4.055801e-02	ci left: 4.730621e-01	ci right 4.927479e-01	k: 4829	n:10000
SHANK2   10000 perm   2 sec   (4834 perm/sec)   p_kst 4.829000e-01   p_cons 9.258000e-01   p_joint 9.594000e-01

Outputting figure to mutsig2_images.part000000000157/SHANK2.2_5536_10000_0.4829_0.9258_0.9594.png
                gene_name: SHANK2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 86 percent done.
SHBG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.850270e-02	ci left: 4.990503e-01	ci right 5.187445e-01	k: 5089	n:10000
Cons ci ratio: 5.196217e-02	ci left: 3.531686e-01	ci right 3.721115e-01	k: 3626	n:10000
KS ci ratio: 5.540393e-02	ci left: 3.242591e-01	ci right 3.428380e-01	k: 3335	n:10000
SHBG   10000 perm   2 sec   (6300 perm/sec)   p_kst 3.335000e-01   p_cons 3.626000e-01   p_joint 5.089000e-01

Outputting figure to mutsig2_images.part000000000157/SHBG.2_1241_10000_0.3335_0.3626_0.5089.png
                gene_name: SHBG
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 88 percent done.
SHE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.723945e-02	ci left: 3.980467e-01	ci right 4.174071e-01	k: 4077	n:10000
Cons ci ratio: 6.979389e-02	ci left: 2.313597e-01	ci right 2.481922e-01	k: 2397	n:10000
KS ci ratio: 2.757116e-02	ci left: 6.596787e-01	ci right 6.782228e-01	k: 6690	n:10000
SHE   10000 perm   2 sec   (6290 perm/sec)   p_kst 6.690000e-01   p_cons 2.397000e-01   p_joint 4.077000e-01

Outputting figure to mutsig2_images.part000000000157/SHE.2_1512_10000_0.669_0.2397_0.4077.png
                gene_name: SHE
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 89 percent done.
SHMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.860876e-02	ci left: 2.375838e-01	ci right 2.545644e-01	k: 2460	n:10000
KS ci ratio: 2.549010e-02	ci left: 6.937343e-01	ci right 7.117474e-01	k: 7028	n:10000
SHMT1   10000 perm   2 sec   (6486 perm/sec)   p_kst 7.028000e-01   p_cons 2.460000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SHMT1.2_1496_10000_0.7028_0.246_1.png
                gene_name: SHMT1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
SHMT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.616595e-02	ci left: 2.511271e-01	ci right 2.684130e-01	k: 2597	n:10000
KS ci ratio: 1.885064e-02	ci left: 8.044048e-01	ci right 8.198129e-01	k: 8122	n:10000
SHMT2   10000 perm   1 sec   (6716 perm/sec)   p_kst 8.122000e-01   p_cons 2.597000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SHMT2.2_1563_10000_0.8122_0.2597_1.png
                gene_name: SHMT2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
SHPK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.764588e-02	ci left: 6.584707e-01	ci right 6.770315e-01	k: 6678	n:10000
Cons ci ratio: 8.208438e-02	ci left: 1.780224e-01	ci right 1.933612e-01	k: 1856	n:10000
KS ci ratio: 4.603814e-02	ci left: 4.105002e-01	ci right 4.299463e-01	k: 4202	n:10000
SHPK   10000 perm   2 sec   (6498 perm/sec)   p_kst 4.202000e-01   p_cons 1.856000e-01   p_joint 6.678000e-01

Outputting figure to mutsig2_images.part000000000157/SHPK.2_1465_10000_0.4202_0.1856_0.6678.png
                gene_name: SHPK
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 94 percent done.
SHROOM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.251109e-02	ci left: 7.434132e-01	ci right 7.604398e-01	k: 7520	n:10000
Cons ci ratio: 1.133519e-02	ci left: 9.174977e-01	ci right 9.280545e-01	k: 9229	n:10000
KS ci ratio: 1.036150e-01	ci left: 1.186757e-01	ci right 1.317435e-01	k: 1251	n:10000
SHROOM1   10000 perm   2 sec   (6000 perm/sec)   p_kst 1.251000e-01   p_cons 9.229000e-01   p_joint 7.520000e-01

Joint ci ratio: 3.647399e-02	ci left: 3.593686e-01	ci right 3.727703e-01	k: 7321	n:20000
Cons ci ratio: 7.925852e-03	ci left: 9.207003e-01	ci right 9.280757e-01	k: 18489	n:20000
KS ci ratio: 7.338550e-02	ci left: 1.202495e-01	ci right 1.294599e-01	k: 2496	n:20000
SHROOM1   20000 perm   4 sec   (5361 perm/sec)   p_kst 1.248000e-01   p_cons 9.244500e-01   p_joint 3.660500e-01

Outputting figure to mutsig2_images.part000000000157/SHROOM1.2_2587_20000_0.1248_0.92445_0.36605.png
                gene_name: SHROOM1
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 95 percent done.
SHROOM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.652095e-02	ci left: 8.420346e-01	ci right 8.561614e-01	k: 8492	n:10000
Cons ci ratio: 2.834659e-02	ci left: 6.471987e-01	ci right 6.659100e-01	k: 6566	n:10000
KS ci ratio: 2.463247e-02	ci left: 7.079580e-01	ci right 7.257155e-01	k: 7169	n:10000
SHROOM2   10000 perm   2 sec   (5300 perm/sec)   p_kst 7.169000e-01   p_cons 6.566000e-01   p_joint 8.492000e-01

Outputting figure to mutsig2_images.part000000000157/SHROOM2.2_4891_10000_0.7169_0.6566_0.8492.png
                gene_name: SHROOM2
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 97 percent done.
SIGLEC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.365934e-02	ci left: 2.125053e-01	ci right 2.288578e-01	k: 2206	n:10000
Cons ci ratio: 1.107643e-01	ci left: 1.051021e-01	ci right 1.175253e-01	k: 1112	n:10000
KS ci ratio: 3.882749e-02	ci left: 4.948504e-01	ci right 5.145468e-01	k: 5047	n:10000
SIGLEC14   10000 perm   1 sec   (6702 perm/sec)   p_kst 5.047000e-01   p_cons 1.112000e-01   p_joint 2.206000e-01

Joint ci ratio: 7.949380e-02	ci left: 1.040745e-01	ci right 1.127398e-01	k: 2167	n:20000
Cons ci ratio: 7.295216e-02	ci left: 1.215289e-01	ci right 1.307801e-01	k: 2522	n:20000
KS ci ratio: 2.724931e-02	ci left: 5.015457e-01	ci right 5.154519e-01	k: 10170	n:20000
SIGLEC14   20000 perm   3 sec   (5852 perm/sec)   p_kst 5.085000e-01   p_cons 1.261000e-01   p_joint 1.083500e-01

Outputting figure to mutsig2_images.part000000000157/SIGLEC14.2_1219_20000_0.5085_0.1261_0.10835.png
                gene_name: SIGLEC14
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 98 percent done.
SIRPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.541574e-02	ci left: 8.592688e-01	ci right 8.727172e-01	k: 8661	n:10000
KS ci ratio: 2.301187e-02	ci left: 7.350228e-01	ci right 7.522350e-01	k: 7437	n:10000
SIRPA   10000 perm   2 sec   (6412 perm/sec)   p_kst 7.437000e-01   p_cons 8.661000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000157/SIRPA.2_1547_10000_0.7437_0.8661_1.png
                gene_name: SIRPA
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000157
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 157 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1705>
Subject: Job 9894132: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1705>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000158> was used as the working directory.
Started at Sat Oct  6 00:29:23 2012
Results reported at Sat Oct  6 01:05:47 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000158.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000158.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 158  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000158.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2247.22 sec.
    Max Memory :      3566 MB
    Max Swap   :      5898 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
158
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 158
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 158: processing genes 14155 - 14244
Calculating significance of each gene.
Using projection method.
14155	SIRPB2	1.271994e-01
14156	SIRPD	5.086444e-02
14157	SIRPG	2.798219e-01
14158	SIRT1	1.691913e-01
14159	SIRT2	3.937821e-01
14160	SIRT3	1
14161	SIRT4	1.263335e-01
14162	SIRT5	4.121848e-01
14163	SIRT6	1
14164	SIRT7	7.113783e-01
14165	SIT1	5.133856e-01
14166	SIVA1	3.828190e-01
14167	SIX1	4.411610e-01
14168	SIX2	8.186727e-01
14169	SIX3	4.399607e-01
14170	SIX4	4.677177e-01
14171	SIX5	6.215749e-01
14172	SIX6	3.763548e-01
14173	SKA1	1
14174	SKA2	5.586375e-01
14175	SKA3	5.913842e-01
14176	SKAP1	1
14177	SKAP2	9.381964e-02
14178	SKI	1
14179	SKIL	9.601891e-01
14180	SKIV2L	7.234946e-01
14181	SKIV2L2	9.139647e-01
14182	SKP1	3.110998e-01
14183	SKP2	7.186242e-01
14184	SLA	1.613598e-02
14185	SLA2	1
14186	SLAIN1	1
14187	SLAIN2	1
14188	SLAMF1	3.514516e-01
14189	SLAMF6	7.449015e-01
14190	SLAMF7	5.486031e-01
14191	SLAMF8	1.225510e-01
14192	SLAMF9	2.782865e-01
14193	SLBP	5.477502e-01
14194	SLC10A1	6.064370e-01
14195	SLC10A2	6.128703e-02
14196	SLC10A3	9.546995e-01
14197	SLC10A4	4.070702e-01
14198	SLC10A5	4.916041e-01
14199	SLC10A6	4.186596e-01
14200	SLC10A7	2.764023e-01
14201	SLC11A1	3.532472e-01
14202	SLC11A2	5.162247e-01
14203	SLC12A1	5.561598e-01
14204	SLC12A2	3.641074e-01
14205	SLC12A3	5.184535e-01
14206	SLC12A4	9.949774e-01
14207	SLC12A5	3.049316e-01
In gene SLC12A6 the following bins exceed PROBCAP:
    COAD-AA-A01I	categ 6	N = 3675    n = 1	mu =   3.29e-07
14208	SLC12A6	4.693749e-01
14209	SLC12A7	1
14210	SLC12A8	9.683585e-01
14211	SLC12A9	1.599576e-02
14212	SLC13A1	2.044309e-01
14213	SLC13A2	5.757386e-01
14214	SLC13A3	5.724429e-02
14215	SLC13A4	3.229616e-01
14216	SLC13A5	9.003442e-01
14217	SLC14A1	5.373725e-01
14218	SLC14A2	8.031859e-01
14219	SLC15A1	9.195016e-01
14220	SLC15A2	3.598977e-01
14221	SLC15A3	1
14222	SLC15A4	3.782376e-01
14223	SLC16A1	3.658399e-01
14224	SLC16A10	7.924542e-01
14225	SLC16A11	1
14226	SLC16A12	5.266871e-01
14227	SLC16A13	8.485440e-01
14228	SLC16A14	6.163637e-01
14229	SLC16A2	4.030967e-01
14230	SLC16A3	1
14231	SLC16A4	5.275469e-01
14232	SLC16A5	1.849145e-01
14233	SLC16A6	8.076974e-01
14234	SLC16A7	3.931471e-04
14235	SLC16A8	7.149538e-01
14236	SLC16A9	1.549676e-01
14237	SLC17A1	2.448011e-01
14238	SLC17A2	1.090356e-01
14239	SLC17A3	8.066023e-02
14240	SLC17A4	1.358060e-01
14241	SLC17A5	3.831491e-01
14242	SLC17A6	9.465511e-01
14243	SLC17A7	2.680451e-01
14244	SLC17A8	3.182581e-01
Done

Running MutSig 2:
Scatter job 158: processing genes 14155 - 14244
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SLC16A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.126117e-02	ci left: 2.815149e-01	ci right 2.994073e-01	k: 2904	n:10000
Cons ci ratio: 4.766254e-02	ci left: 3.937641e-01	ci right 4.130922e-01	k: 4034	n:10000
KS ci ratio: 8.732659e-02	ci left: 1.603269e-01	ci right 1.750672e-01	k: 1676	n:10000
SLC16A7   10000 perm   2 sec   (4700 perm/sec)   p_kst 1.676000e-01   p_cons 4.034000e-01   p_joint 2.904000e-01

Outputting figure to mutsig2_images.part000000000158/SLC16A7.12_1453_10000_0.1676_0.4034_0.2904.png
                gene_name: SLC16A7
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 2 percent done.
SLC12A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.104012e-02	ci left: 4.671685e-01	ci right 4.868449e-01	k: 4770	n:10000
Cons ci ratio: 6.553133e-03	ci left: 9.695265e-01	ci right 9.759942e-01	k: 9729	n:10000
KS ci ratio: 5.443389e-02	ci left: 3.321036e-01	ci right 3.507889e-01	k: 3414	n:10000
SLC12A1   10000 perm   2 sec   (4881 perm/sec)   p_kst 3.414000e-01   p_cons 9.729000e-01   p_joint 4.770000e-01

Outputting figure to mutsig2_images.part000000000158/SLC12A1.11_3504_10000_0.3414_0.9729_0.477.png
                gene_name: SLC12A1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 3 percent done.
SLC12A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.518270e-02	ci left: 2.568641e-01	ci right 2.742727e-01	k: 2655	n:10000
Cons ci ratio: 1.148705e-01	ci left: 9.827781e-02	ci right 1.103538e-01	k: 1042	n:10000
KS ci ratio: 5.639027e-02	ci left: 3.165168e-01	ci right 3.349849e-01	k: 3257	n:10000
SLC12A2   10000 perm   2 sec   (4778 perm/sec)   p_kst 3.257000e-01   p_cons 1.042000e-01   p_joint 2.655000e-01

Joint ci ratio: 5.104793e-02	ci left: 2.218536e-01	ci right 2.335257e-01	k: 4553	n:20000
Cons ci ratio: 8.597664e-02	ci left: 9.008782e-02	ci right 9.823061e-02	k: 1882	n:20000
KS ci ratio: 3.991940e-02	ci left: 3.187583e-01	ci right 3.317926e-01	k: 6505	n:20000
SLC12A2   20000 perm   5 sec   (4348 perm/sec)   p_kst 3.252500e-01   p_cons 9.410000e-02   p_joint 2.276500e-01

Outputting figure to mutsig2_images.part000000000158/SLC12A2.9_3747_20000_0.32525_0.0941_0.22765.png
                gene_name: SLC12A2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 5 percent done.
SLC12A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.021042e-02	ci left: 3.690799e-01	ci right 3.881908e-01	k: 3786	n:10000
Cons ci ratio: 3.701324e-02	ci left: 5.187591e-01	ci right 5.384242e-01	k: 5286	n:10000
KS ci ratio: 6.548479e-02	ci left: 2.550834e-01	ci right 2.724544e-01	k: 2637	n:10000
SLC12A5   10000 perm   2 sec   (5127 perm/sec)   p_kst 2.637000e-01   p_cons 5.286000e-01   p_joint 3.786000e-01

Outputting figure to mutsig2_images.part000000000158/SLC12A5.9_3580_10000_0.2637_0.5286_0.3786.png
                gene_name: SLC12A5
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 7 percent done.
SLC12A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.953258e-02	ci left: 4.858530e-01	ci right 5.055495e-01	k: 4957	n:10000
Cons ci ratio: 5.397717e-02	ci left: 3.358779e-01	ci right 3.546124e-01	k: 3452	n:10000
KS ci ratio: 5.666090e-02	ci left: 3.144328e-01	ci right 3.328701e-01	k: 3236	n:10000
SLC12A9   10000 perm   2 sec   (4712 perm/sec)   p_kst 3.236000e-01   p_cons 3.452000e-01   p_joint 4.957000e-01

Outputting figure to mutsig2_images.part000000000158/SLC12A9.9_2797_10000_0.3236_0.3452_0.4957.png
                gene_name: SLC12A9
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 8 percent done.
SIX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.254030e-02	ci left: 3.480992e-01	ci right 3.669838e-01	k: 3575	n:10000
Cons ci ratio: 8.249378e-02	ci left: 1.765467e-01	ci right 1.918378e-01	k: 1841	n:10000
KS ci ratio: 3.574050e-02	ci left: 5.361795e-01	ci right 5.557937e-01	k: 5460	n:10000
SIX4   10000 perm   2 sec   (5468 perm/sec)   p_kst 5.460000e-01   p_cons 1.841000e-01   p_joint 3.575000e-01

Outputting figure to mutsig2_images.part000000000158/SIX4.8_2358_10000_0.546_0.1841_0.3575.png
                gene_name: SIX4
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 10 percent done.
SLC12A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.155999e-02	ci left: 3.567477e-01	ci right 3.757303e-01	k: 3662	n:10000
Cons ci ratio: 6.409772e-02	ci left: 2.633947e-01	ci right 2.809382e-01	k: 2721	n:10000
KS ci ratio: 5.903404e-02	ci left: 2.968763e-01	ci right 3.150368e-01	k: 3059	n:10000
SLC12A6   10000 perm   2 sec   (4441 perm/sec)   p_kst 3.059000e-01   p_cons 2.721000e-01   p_joint 3.662000e-01

Outputting figure to mutsig2_images.part000000000158/SLC12A6.8_3675_10000_0.3059_0.2721_0.3662.png
                gene_name: SLC12A6
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 11 percent done.
SLC13A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.882593e-02	ci left: 8.048110e-01	ci right 8.202065e-01	k: 8126	n:10000
Cons ci ratio: 4.060676e-02	ci left: 4.724627e-01	ci right 4.921476e-01	k: 4823	n:10000
KS ci ratio: 2.386340e-02	ci left: 7.207785e-01	ci right 7.382876e-01	k: 7296	n:10000
SLC13A1   10000 perm   2 sec   (5276 perm/sec)   p_kst 7.296000e-01   p_cons 4.823000e-01   p_joint 8.126000e-01

Outputting figure to mutsig2_images.part000000000158/SLC13A1.8_1848_10000_0.7296_0.4823_0.8126.png
                gene_name: SLC13A1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 13 percent done.
SLC17A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.067840e-01	ci left: 7.332900e-03	ci right 1.116119e-02	k: 91	n:10000
Cons ci ratio: 4.962703e-01	ci left: 4.669135e-03	ci right 7.828899e-03	k: 61	n:10000
KS ci ratio: 1.384600e-01	ci left: 6.904079e-02	ci right 7.940888e-02	k: 741	n:10000
SLC17A2   10000 perm   2 sec   (5659 perm/sec)   p_kst 7.410000e-02   p_cons 6.100000e-03   p_joint 9.100000e-03

Joint ci ratio: 3.337509e-01	ci left: 5.708210e-03	ci right 8.038631e-03	k: 136	n:20000
Cons ci ratio: 3.277811e-01	ci left: 5.937561e-03	ci right 8.309133e-03	k: 141	n:20000
KS ci ratio: 9.627114e-02	ci left: 7.285307e-02	ci right 8.027059e-02	k: 1530	n:20000
SLC17A2   20000 perm   4 sec   (5078 perm/sec)   p_kst 7.650000e-02   p_cons 7.050000e-03   p_joint 6.800000e-03

Joint ci ratio: 2.211240e-01	ci left: 9.219947e-03	ci right 1.154301e-02	k: 310	n:30000
Cons ci ratio: 3.192602e-01	ci left: 4.202752e-03	ci right 5.828718e-03	k: 149	n:30000
KS ci ratio: 7.854081e-02	ci left: 7.364765e-02	ci right 7.970130e-02	k: 2299	n:30000
SLC17A2   30000 perm   6 sec   (4848 perm/sec)   p_kst 7.663333e-02   p_cons 4.966667e-03   p_joint 1.033333e-02

Joint ci ratio: 2.077153e-01	ci left: 7.908047e-03	ci right 9.764313e-03	k: 352	n:40000
Cons ci ratio: 2.867557e-01	ci left: 3.983757e-03	ci right 5.339698e-03	k: 185	n:40000
KS ci ratio: 6.742117e-02	ci left: 7.529172e-02	ci right 8.056975e-02	k: 3116	n:40000
SLC17A2   40000 perm   8 sec   (4707 perm/sec)   p_kst 7.790000e-02   p_cons 4.625000e-03   p_joint 8.800000e-03

Joint ci ratio: 1.959546e-01	ci left: 7.161715e-03	ci right 8.736219e-03	k: 396	n:50000
Cons ci ratio: 2.319454e-01	ci left: 5.021268e-03	ci right 6.357106e-03	k: 283	n:50000
KS ci ratio: 6.068646e-02	ci left: 7.467787e-02	ci right 7.937138e-02	k: 3850	n:50000
SLC17A2   50000 perm   11 sec   (4592 perm/sec)   p_kst 7.700000e-02   p_cons 5.660000e-03   p_joint 7.920000e-03

Joint ci ratio: 1.978491e-01	ci left: 5.856780e-03	ci right 7.158312e-03	k: 389	n:60000
Cons ci ratio: 2.129337e-01	ci left: 5.018582e-03	ci right 6.229991e-03	k: 336	n:60000
KS ci ratio: 5.529663e-02	ci left: 7.514230e-02	ci right 7.943203e-02	k: 4636	n:60000
SLC17A2   60000 perm   13 sec   (4461 perm/sec)   p_kst 7.726667e-02   p_cons 5.600000e-03   p_joint 6.483333e-03

Joint ci ratio: 2.016135e-01	ci left: 4.829834e-03	ci right 5.926067e-03	k: 375	n:70000
Cons ci ratio: 1.981975e-01	ci left: 5.006296e-03	ci right 6.121005e-03	k: 388	n:70000
KS ci ratio: 5.093926e-02	ci left: 7.600965e-02	ci right 7.999684e-02	k: 5459	n:70000
SLC17A2   70000 perm   16 sec   (4346 perm/sec)   p_kst 7.798571e-02   p_cons 5.542857e-03   p_joint 5.357143e-03

Joint ci ratio: 2.072955e-01	ci left: 3.988717e-03	ci right 4.922781e-03	k: 355	n:80000
Cons ci ratio: 1.861503e-01	ci left: 4.999258e-03	ci right 6.037097e-03	k: 440	n:80000
KS ci ratio: 4.767007e-02	ci left: 7.607660e-02	ci right 7.980408e-02	k: 6234	n:80000
SLC17A2   80000 perm   19 sec   (4260 perm/sec)   p_kst 7.792500e-02   p_cons 5.500000e-03   p_joint 4.437500e-03

Joint ci ratio: 2.144157e-01	ci left: 3.303333e-03	ci right 4.106956e-03	k: 332	n:90000
Cons ci ratio: 1.727467e-01	ci left: 5.197325e-03	ci right 6.190498e-03	k: 511	n:90000
KS ci ratio: 4.488613e-02	ci left: 7.636601e-02	ci right 7.988346e-02	k: 7030	n:90000
SLC17A2   90000 perm   22 sec   (4183 perm/sec)   p_kst 7.811111e-02   p_cons 5.677778e-03   p_joint 3.688889e-03

Joint ci ratio: 2.068062e-01	ci left: 3.209800e-03	ci right 3.959448e-03	k: 357	n:100000
Cons ci ratio: 1.637213e-01	ci left: 5.233192e-03	ci right 6.175826e-03	k: 569	n:100000
KS ci ratio: 4.265155e-02	ci left: 7.622632e-02	ci right 7.955822e-02	k: 7788	n:100000
SLC17A2   100000 perm   24 sec   (4110 perm/sec)   p_kst 7.788000e-02   p_cons 5.690000e-03   p_joint 3.570000e-03

Joint ci ratio: 1.499701e-01	ci left: 5.709633e-03	ci right 6.643964e-03	k: 678	n:110000
Cons ci ratio: 1.563532e-01	ci left: 5.237430e-03	ci right 6.134389e-03	k: 624	n:110000
KS ci ratio: 4.045430e-02	ci left: 7.705228e-02	ci right 8.024271e-02	k: 8650	n:110000
SLC17A2   110000 perm   27 sec   (4040 perm/sec)   p_kst 7.863636e-02   p_cons 5.672727e-03   p_joint 6.163636e-03

Joint ci ratio: 1.194710e-01	ci left: 8.360167e-03	ci right 9.430435e-03	k: 1066	n:120000
Cons ci ratio: 1.643802e-01	ci left: 4.328860e-03	ci right 5.112038e-03	k: 565	n:120000
KS ci ratio: 3.869525e-02	ci left: 7.725685e-02	ci right 8.031354e-02	k: 9453	n:120000
SLC17A2   120000 perm   30 sec   (3977 perm/sec)   p_kst 7.877500e-02   p_cons 4.708333e-03   p_joint 8.883333e-03

Joint ci ratio: 1.557971e-01	ci left: 4.468491e-03	ci right 5.230777e-03	k: 629	n:130000
Cons ci ratio: 1.575661e-01	ci left: 4.365003e-03	ci right 5.118889e-03	k: 615	n:130000
KS ci ratio: 3.675202e-02	ci left: 7.898844e-02	ci right 8.195338e-02	k: 10460	n:130000
SLC17A2   130000 perm   33 sec   (3917 perm/sec)   p_kst 8.046154e-02   p_cons 4.730769e-03   p_joint 4.838462e-03

Joint ci ratio: 1.307583e-01	ci left: 5.961320e-03	ci right 6.802179e-03	k: 892	n:140000
Cons ci ratio: 1.517638e-01	ci left: 4.382810e-03	ci right 5.109364e-03	k: 663	n:140000
KS ci ratio: 3.540095e-02	ci left: 7.910124e-02	ci right 8.195902e-02	k: 11273	n:140000
SLC17A2   140000 perm   36 sec   (3859 perm/sec)   p_kst 8.052143e-02   p_cons 4.735714e-03   p_joint 6.371429e-03

Joint ci ratio: 1.296232e-01	ci left: 5.667034e-03	ci right 6.458908e-03	k: 908	n:150000
Cons ci ratio: 1.459421e-01	ci left: 4.437227e-03	ci right 5.142125e-03	k: 717	n:150000
KS ci ratio: 3.412885e-02	ci left: 7.945870e-02	ci right 8.222420e-02	k: 12125	n:150000
SLC17A2   150000 perm   39 sec   (3801 perm/sec)   p_kst 8.083333e-02   p_cons 4.780000e-03   p_joint 6.053333e-03

Joint ci ratio: 1.357936e-01	ci left: 4.829292e-03	ci right 5.538820e-03	k: 828	n:160000
Cons ci ratio: 1.413882e-01	ci left: 4.443093e-03	ci right 5.125042e-03	k: 764	n:160000
KS ci ratio: 3.300960e-02	ci left: 7.966140e-02	ci right 8.234130e-02	k: 12959	n:160000
SLC17A2   160000 perm   43 sec   (3743 perm/sec)   p_kst 8.099375e-02   p_cons 4.775000e-03   p_joint 5.175000e-03

Joint ci ratio: 1.393198e-01	ci left: 4.312257e-03	ci right 4.963637e-03	k: 787	n:170000
Cons ci ratio: 1.368131e-01	ci left: 4.476979e-03	ci right 5.140082e-03	k: 816	n:170000
KS ci ratio: 3.205189e-02	ci left: 7.957296e-02	ci right 8.217077e-02	k: 13747	n:170000
SLC17A2   170000 perm   46 sec   (3688 perm/sec)   p_kst 8.086471e-02   p_cons 4.800000e-03   p_joint 4.629412e-03

Joint ci ratio: 1.351793e-01	ci left: 4.335567e-03	ci right 4.969438e-03	k: 836	n:180000
Cons ci ratio: 1.335069e-01	ci left: 4.448329e-03	ci right 5.090003e-03	k: 857	n:180000
KS ci ratio: 3.116247e-02	ci left: 7.954499e-02	ci right 8.206853e-02	k: 14544	n:180000
SLC17A2   180000 perm   49 sec   (3637 perm/sec)   p_kst 8.080000e-02   p_cons 4.761111e-03   p_joint 4.644444e-03

Joint ci ratio: 1.347921e-01	ci left: 4.132777e-03	ci right 4.735129e-03	k: 841	n:190000
Cons ci ratio: 1.299942e-01	ci left: 4.453423e-03	ci right 5.077624e-03	k: 904	n:190000
KS ci ratio: 3.034106e-02	ci left: 7.953132e-02	ci right 8.198675e-02	k: 15343	n:190000
SLC17A2   190000 perm   53 sec   (3590 perm/sec)   p_kst 8.075263e-02   p_cons 4.757895e-03   p_joint 4.426316e-03

Joint ci ratio: 9.724005e-02	ci left: 7.667893e-03	ci right 8.456466e-03	k: 1611	n:200000
Cons ci ratio: 1.097348e-01	ci left: 5.991953e-03	ci right 6.692471e-03	k: 1267	n:200000
KS ci ratio: 2.957140e-02	ci left: 7.956947e-02	ci right 8.196270e-02	k: 16152	n:200000
SLC17A2   200000 perm   56 sec   (3545 perm/sec)   p_kst 8.076000e-02   p_cons 6.335000e-03   p_joint 8.055000e-03

Joint ci ratio: 9.522610e-02	ci left: 7.623410e-03	ci right 8.390264e-03	k: 1680	n:210000
Cons ci ratio: 1.072687e-01	ci left: 5.979948e-03	ci right 6.662358e-03	k: 1326	n:210000
KS ci ratio: 2.882883e-02	ci left: 7.975134e-02	ci right 8.208881e-02	k: 16992	n:210000
SLC17A2   210000 perm   60 sec   (3499 perm/sec)   p_kst 8.091429e-02   p_cons 6.314286e-03   p_joint 8.000000e-03

Joint ci ratio: 8.963681e-02	ci left: 8.231703e-03	ci right 9.008600e-03	k: 1895	n:220000
Cons ci ratio: 1.048476e-01	ci left: 5.982475e-03	ci right 6.648815e-03	k: 1388	n:220000
KS ci ratio: 2.836077e-02	ci left: 7.876576e-02	ci right 8.103624e-02	k: 17577	n:220000
SLC17A2   220000 perm   64 sec   (3454 perm/sec)   p_kst 7.989545e-02   p_cons 6.309091e-03   p_joint 8.613636e-03

Joint ci ratio: 8.402638e-02	ci left: 8.979853e-03	ci right 9.771716e-03	k: 2155	n:230000
Cons ci ratio: 1.025123e-01	ci left: 5.993414e-03	ci right 6.645208e-03	k: 1452	n:230000
KS ci ratio: 2.774149e-02	ci left: 7.876911e-02	ci right 8.098931e-02	k: 18371	n:230000
SLC17A2   230000 perm   68 sec   (3401 perm/sec)   p_kst 7.987391e-02   p_cons 6.313043e-03   p_joint 9.369565e-03

Joint ci ratio: 7.890449e-02	ci left: 9.777337e-03	ci right 1.058456e-02	k: 2442	n:240000
Cons ci ratio: 1.059549e-01	ci left: 5.370254e-03	ci right 5.975112e-03	k: 1360	n:240000
KS ci ratio: 2.712725e-02	ci left: 7.895488e-02	ci right 8.113027e-02	k: 19209	n:240000
SLC17A2   240000 perm   72 sec   (3347 perm/sec)   p_kst 8.003750e-02   p_cons 5.666667e-03   p_joint 1.017500e-02

Joint ci ratio: 7.874190e-02	ci left: 9.429310e-03	ci right 1.020612e-02	k: 2453	n:250000
Cons ci ratio: 1.036566e-01	ci left: 5.393051e-03	ci right 5.986497e-03	k: 1421	n:250000
KS ci ratio: 2.657369e-02	ci left: 7.900701e-02	ci right 8.113874e-02	k: 20017	n:250000
SLC17A2   250000 perm   76 sec   (3302 perm/sec)   p_kst 8.006800e-02   p_cons 5.684000e-03   p_joint 9.812000e-03

Joint ci ratio: 8.065300e-02	ci left: 8.640547e-03	ci right 9.370461e-03	k: 2340	n:260000
Cons ci ratio: 1.015704e-01	ci left: 5.406727e-03	ci right 5.988990e-03	k: 1480	n:260000
KS ci ratio: 2.606018e-02	ci left: 7.901349e-02	ci right 8.110358e-02	k: 20814	n:260000
SLC17A2   260000 perm   80 sec   (3261 perm/sec)   p_kst 8.005385e-02   p_cons 5.692308e-03   p_joint 9.000000e-03

Joint ci ratio: 7.936037e-02	ci left: 8.599999e-03	ci right 9.314305e-03	k: 2417	n:270000
Cons ci ratio: 9.986660e-02	ci left: 5.390607e-03	ci right 5.960824e-03	k: 1531	n:270000
KS ci ratio: 2.559787e-02	ci left: 7.889099e-02	ci right 8.094026e-02	k: 21576	n:270000
SLC17A2   270000 perm   84 sec   (3223 perm/sec)   p_kst 7.991111e-02   p_cons 5.670370e-03   p_joint 8.951852e-03

Outputting figure to mutsig2_images.part000000000158/SLC17A2.8_1351_270000_0.079911_0.0056704_0.0089519.png
                gene_name: SLC17A2
               theta_stop: 0.100 
                    nperm: 270000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.0057 
      ci_cons_bounds_left: 0.0054 
     ci_cons_bounds_right: 0.0060 
                  p_joint: 0.0090 
     ci_joint_bounds_left: 0.0086 
    ci_joint_bounds_right: 0.0093 

Current progress: 15 percent done.
SLC13A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.789910e-02	ci left: 8.199499e-01	ci right 8.348589e-01	k: 8275	n:10000
Cons ci ratio: 2.777056e-02	ci left: 6.564574e-01	ci right 6.750460e-01	k: 6658	n:10000
KS ci ratio: 3.951678e-02	ci left: 4.860529e-01	ci right 5.057495e-01	k: 4959	n:10000
SLC13A2   10000 perm   2 sec   (5965 perm/sec)   p_kst 4.959000e-01   p_cons 6.658000e-01   p_joint 8.275000e-01

Outputting figure to mutsig2_images.part000000000158/SLC13A2.6_1974_10000_0.4959_0.6658_0.8275.png
                gene_name: SLC13A2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 16 percent done.
SLC13A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.331236e-02	ci left: 4.404146e-01	ci right 4.600144e-01	k: 4502	n:10000
Cons ci ratio: 1.317679e-01	ci left: 7.591905e-02	ci right 8.672633e-02	k: 812	n:10000
KS ci ratio: 7.296213e-03	ci left: 9.628897e-01	ci right 9.700352e-01	k: 9666	n:10000
SLC13A3   10000 perm   2 sec   (5425 perm/sec)   p_kst 9.666000e-01   p_cons 8.120000e-02   p_joint 4.502000e-01

Joint ci ratio: 4.085156e-02	ci left: 3.087634e-01	ci right 3.216904e-01	k: 6304	n:20000
Cons ci ratio: 9.117641e-02	ci left: 8.072986e-02	ci right 8.849141e-02	k: 1691	n:20000
KS ci ratio: 5.336533e-03	ci left: 9.616352e-01	ci right 9.668287e-01	k: 19286	n:20000
SLC13A3   20000 perm   4 sec   (4879 perm/sec)   p_kst 9.643000e-01   p_cons 8.455000e-02   p_joint 3.152000e-01

Outputting figure to mutsig2_images.part000000000158/SLC13A3.6_1861_20000_0.9643_0.08455_0.3152.png
                gene_name: SLC13A3
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.088 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 18 percent done.
SLC17A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.179890e-02	ci left: 7.553490e-01	ci right 7.720971e-01	k: 7638	n:10000
Cons ci ratio: 4.987073e-02	ci left: 3.722635e-01	ci right 3.914054e-01	k: 3818	n:10000
KS ci ratio: 1.830504e-02	ci left: 8.133433e-01	ci right 8.284693e-01	k: 8210	n:10000
SLC17A1   10000 perm   2 sec   (5248 perm/sec)   p_kst 8.210000e-01   p_cons 3.818000e-01   p_joint 7.638000e-01

Outputting figure to mutsig2_images.part000000000158/SLC17A1.6_1448_10000_0.821_0.3818_0.7638.png
                gene_name: SLC17A1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 20 percent done.
SIRT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.240382e-01	ci left: 8.514113e-02	ci right 9.649855e-02	k: 907	n:10000
Cons ci ratio: 1.354280e-01	ci left: 7.204238e-02	ci right 8.260541e-02	k: 772	n:10000
KS ci ratio: 1.373633e-01	ci left: 7.010558e-02	ci right 8.054343e-02	k: 752	n:10000
SIRT1   10000 perm   2 sec   (4956 perm/sec)   p_kst 7.520000e-02   p_cons 7.720000e-02   p_joint 9.070000e-02

Joint ci ratio: 9.111760e-02	ci left: 8.082777e-02	ci right 8.859346e-02	k: 1693	n:20000
Cons ci ratio: 9.503318e-02	ci left: 7.466227e-02	ci right 8.216085e-02	k: 1567	n:20000
KS ci ratio: 9.526410e-02	ci left: 7.431994e-02	ci right 8.180328e-02	k: 1560	n:20000
SIRT1   20000 perm   4 sec   (4534 perm/sec)   p_kst 7.800000e-02   p_cons 7.835000e-02   p_joint 8.465000e-02

Outputting figure to mutsig2_images.part000000000158/SIRT1.5_2280_20000_0.078_0.07835_0.08465.png
                gene_name: SIRT1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.089 

Current progress: 21 percent done.
SLC12A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.247176e-02	ci left: 3.486956e-01	ci right 3.675871e-01	k: 3581	n:10000
Cons ci ratio: 3.681323e-02	ci left: 5.214615e-01	ci right 5.411203e-01	k: 5313	n:10000
KS ci ratio: 7.800821e-02	ci left: 1.936760e-01	ci right 2.094982e-01	k: 2015	n:10000
SLC12A3   10000 perm   2 sec   (4873 perm/sec)   p_kst 2.015000e-01   p_cons 5.313000e-01   p_joint 3.581000e-01

Outputting figure to mutsig2_images.part000000000158/SLC12A3.5_3197_10000_0.2015_0.5313_0.3581.png
                gene_name: SLC12A3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 23 percent done.
SLC13A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.069893e-02	ci left: 6.102019e-01	ci right 6.293283e-01	k: 6198	n:10000
Cons ci ratio: 7.550600e-02	ci left: 2.042211e-01	ci right 2.203469e-01	k: 2122	n:10000
KS ci ratio: 1.250437e-02	ci left: 9.018575e-01	ci right 9.133038e-01	k: 9077	n:10000
SLC13A4   10000 perm   2 sec   (5894 perm/sec)   p_kst 9.077000e-01   p_cons 2.122000e-01   p_joint 6.198000e-01

Outputting figure to mutsig2_images.part000000000158/SLC13A4.5_1945_10000_0.9077_0.2122_0.6198.png
                gene_name: SLC13A4
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 25 percent done.
SLC15A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.269727e-02	ci left: 8.991872e-01	ci right 9.107756e-01	k: 9051	n:10000
Cons ci ratio: 1.423087e-02	ci left: 8.771523e-01	ci right 8.898233e-01	k: 8836	n:10000
KS ci ratio: 2.710561e-02	ci left: 6.672307e-01	ci right 6.856665e-01	k: 6765	n:10000
SLC15A2   10000 perm   2 sec   (5227 perm/sec)   p_kst 6.765000e-01   p_cons 8.836000e-01   p_joint 9.051000e-01

Outputting figure to mutsig2_images.part000000000158/SLC15A2.5_2278_10000_0.6765_0.8836_0.9051.png
                gene_name: SLC15A2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 26 percent done.
SLC16A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.970476e-02	ci left: 7.902989e-01	ci right 8.061270e-01	k: 7983	n:10000
Cons ci ratio: 6.201258e-02	ci left: 2.765622e-01	ci right 2.943629e-01	k: 2854	n:10000
KS ci ratio: 1.474450e-02	ci left: 8.694829e-01	ci right 8.824972e-01	k: 8761	n:10000
SLC16A12   10000 perm   2 sec   (6161 perm/sec)   p_kst 8.761000e-01   p_cons 2.854000e-01   p_joint 7.983000e-01

Outputting figure to mutsig2_images.part000000000158/SLC16A12.5_1575_10000_0.8761_0.2854_0.7983.png
                gene_name: SLC16A12
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 28 percent done.
SLC16A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.304147e-02	ci left: 8.943634e-01	ci right 9.062022e-01	k: 9004	n:10000
Cons ci ratio: 1.737018e-02	ci left: 8.284934e-01	ci right 8.431104e-01	k: 8359	n:10000
KS ci ratio: 2.150284e-02	ci left: 7.603080e-01	ci right 7.769353e-01	k: 7687	n:10000
SLC16A9   10000 perm   2 sec   (5484 perm/sec)   p_kst 7.687000e-01   p_cons 8.359000e-01   p_joint 9.004000e-01

Outputting figure to mutsig2_images.part000000000158/SLC16A9.5_1550_10000_0.7687_0.8359_0.9004.png
                gene_name: SLC16A9
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 30 percent done.
SLC17A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.777363e-02	ci left: 8.219835e-01	ci right 8.368241e-01	k: 8295	n:10000
KS ci ratio: 2.666089e-02	ci left: 6.744830e-01	ci right 6.928099e-01	k: 6837	n:10000
SLC17A3   10000 perm   2 sec   (5589 perm/sec)   p_kst 6.837000e-01   p_cons 8.295000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC17A3.5_1541_10000_0.6837_0.8295_1.png
                gene_name: SLC17A3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 31 percent done.
SLC17A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.152538e-02	ci left: 5.975480e-01	ci right 6.167896e-01	k: 6072	n:10000
KS ci ratio: 1.999794e-02	ci left: 7.854313e-01	ci right 8.013975e-01	k: 7935	n:10000
SLC17A7   10000 perm   2 sec   (6034 perm/sec)   p_kst 7.935000e-01   p_cons 6.072000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC17A7.5_1731_10000_0.7935_0.6072_1.png
                gene_name: SLC17A7
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
SIRPB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.787716e-02	ci left: 2.415369e-01	ci right 2.586089e-01	k: 2500	n:10000
Cons ci ratio: 1.960073e-02	ci left: 7.920233e-01	ci right 8.078016e-01	k: 8000	n:10000
KS ci ratio: 8.676772e-02	ci left: 1.620951e-01	ci right 1.768979e-01	k: 1694	n:10000
SIRPB2   10000 perm   2 sec   (5974 perm/sec)   p_kst 1.694000e-01   p_cons 8.000000e-01   p_joint 2.500000e-01

Outputting figure to mutsig2_images.part000000000158/SIRPB2.4_1049_10000_0.1694_0.8_0.25.png
                gene_name: SIRPB2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 34 percent done.
SIRPG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.183970e-02	ci left: 1.469770e-01	ci right 1.612251e-01	k: 1540	n:10000
Cons ci ratio: 9.375324e-02	ci left: 1.417796e-01	ci right 1.558256e-01	k: 1487	n:10000
KS ci ratio: 9.005031e-02	ci left: 1.520792e-01	ci right 1.665198e-01	k: 1592	n:10000
SIRPG   10000 perm   2 sec   (5955 perm/sec)   p_kst 1.592000e-01   p_cons 1.487000e-01   p_joint 1.540000e-01

Outputting figure to mutsig2_images.part000000000158/SIRPG.4_1184_10000_0.1592_0.1487_0.154.png
                gene_name: SIRPG
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 36 percent done.
SIRT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.541692e-02	ci left: 6.949445e-01	ci right 7.129366e-01	k: 7040	n:10000
Cons ci ratio: 3.713967e-02	ci left: 5.170577e-01	ci right 5.367266e-01	k: 5269	n:10000
KS ci ratio: 4.189691e-02	ci left: 4.568828e-01	ci right 4.765366e-01	k: 4667	n:10000
SIRT4   10000 perm   2 sec   (5831 perm/sec)   p_kst 4.667000e-01   p_cons 5.269000e-01   p_joint 7.040000e-01

Outputting figure to mutsig2_images.part000000000158/SIRT4.4_957_10000_0.4667_0.5269_0.704.png
                gene_name: SIRT4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 38 percent done.
SLA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.944204e-02	ci left: 6.297987e-01	ci right 6.487201e-01	k: 6393	n:10000
Cons ci ratio: 6.067200e-02	ci left: 2.854779e-01	ci right 3.034419e-01	k: 2944	n:10000
KS ci ratio: 4.014615e-02	ci left: 4.781577e-01	ci right 4.978493e-01	k: 4880	n:10000
SLA   10000 perm   2 sec   (6071 perm/sec)   p_kst 4.880000e-01   p_cons 2.944000e-01   p_joint 6.393000e-01

Outputting figure to mutsig2_images.part000000000158/SLA.4_994_10000_0.488_0.2944_0.6393.png
                gene_name: SLA
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 39 percent done.
SLAMF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.346137e-02	ci left: 4.387185e-01	ci right 4.583115e-01	k: 4485	n:10000
Cons ci ratio: 3.747619e-02	ci left: 5.125547e-01	ci right 5.322323e-01	k: 5224	n:10000
KS ci ratio: 6.862726e-02	ci left: 2.374850e-01	ci right 2.544633e-01	k: 2459	n:10000
SLAMF1   10000 perm   2 sec   (5943 perm/sec)   p_kst 2.459000e-01   p_cons 5.224000e-01   p_joint 4.485000e-01

Outputting figure to mutsig2_images.part000000000158/SLAMF1.4_1036_10000_0.2459_0.5224_0.4485.png
                gene_name: SLAMF1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 41 percent done.
SLC10A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.501845e-02	ci left: 5.462969e-01	ci right 5.658704e-01	k: 5561	n:10000
KS ci ratio: 3.219017e-02	ci left: 5.875100e-01	ci right 6.068334e-01	k: 5972	n:10000
SLC10A2   10000 perm   2 sec   (5985 perm/sec)   p_kst 5.972000e-01   p_cons 5.561000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC10A2.4_1071_10000_0.5972_0.5561_1.png
                gene_name: SLC10A2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
SLC16A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.372187e-02	ci left: 1.722191e-01	ci right 1.873680e-01	k: 1797	n:10000
Cons ci ratio: 1.963746e-02	ci left: 7.914146e-01	ci right 8.072106e-01	k: 7994	n:10000
KS ci ratio: 1.256428e-01	ci left: 8.310086e-02	ci right 9.434008e-02	k: 886	n:10000
SLC16A5   10000 perm   2 sec   (5632 perm/sec)   p_kst 8.860000e-02   p_cons 7.994000e-01   p_joint 1.797000e-01

Joint ci ratio: 4.919030e-02	ci left: 2.350360e-01	ci right 2.469394e-01	k: 4819	n:20000
Cons ci ratio: 1.385739e-02	ci left: 7.944385e-01	ci right 8.055742e-01	k: 16001	n:20000
KS ci ratio: 8.854373e-02	ci left: 8.528465e-02	ci right 9.323524e-02	k: 1784	n:20000
SLC16A5   20000 perm   4 sec   (5001 perm/sec)   p_kst 8.920000e-02   p_cons 8.000500e-01   p_joint 2.409500e-01

Outputting figure to mutsig2_images.part000000000158/SLC16A5.4_1538_20000_0.0892_0.80005_0.24095.png
                gene_name: SLC16A5
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 44 percent done.
SLC17A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.705609e-02	ci left: 6.680363e-01	ci right 6.864603e-01	k: 6773	n:10000
KS ci ratio: 1.602799e-02	ci left: 8.497808e-01	ci right 8.636107e-01	k: 8568	n:10000
SLC17A8   10000 perm   2 sec   (6271 perm/sec)   p_kst 8.568000e-01   p_cons 6.773000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC17A8.4_1818_10000_0.8568_0.6773_1.png
                gene_name: SLC17A8
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
SIRPD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.779874e-02	ci left: 8.215767e-01	ci right 8.364311e-01	k: 8291	n:10000
KS ci ratio: 1.323674e-02	ci left: 8.915942e-01	ci right 9.035731e-01	k: 8977	n:10000
SIRPD   10000 perm   1 sec   (7062 perm/sec)   p_kst 8.977000e-01   p_cons 8.291000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SIRPD.3_610_10000_0.8977_0.8291_1.png
                gene_name: SIRPD
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
SIRT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.041308e-02	ci left: 6.146223e-01	ci right 6.337054e-01	k: 6242	n:10000
Cons ci ratio: 8.321448e-02	ci left: 1.739892e-01	ci right 1.891967e-01	k: 1815	n:10000
KS ci ratio: 1.004954e-02	ci left: 9.335086e-01	ci right 9.430341e-01	k: 9384	n:10000
SIRT5   10000 perm   2 sec   (5881 perm/sec)   p_kst 9.384000e-01   p_cons 1.815000e-01   p_joint 6.242000e-01

Outputting figure to mutsig2_images.part000000000158/SIRT5.3_1012_10000_0.9384_0.1815_0.6242.png
                gene_name: SIRT5
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 49 percent done.
SIX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.078065e-02	ci left: 3.638081e-01	ci right 3.828658e-01	k: 3733	n:10000
Cons ci ratio: 3.023188e-02	ci left: 6.174357e-01	ci right 6.364903e-01	k: 6270	n:10000
KS ci ratio: 1.022198e-01	ci left: 1.216088e-01	ci right 1.348087e-01	k: 1281	n:10000
SIX6   10000 perm   2 sec   (6012 perm/sec)   p_kst 1.281000e-01   p_cons 6.270000e-01   p_joint 3.733000e-01

Joint ci ratio: 7.073902e-02	ci left: 1.283717e-01	ci right 1.378353e-01	k: 2661	n:20000
Cons ci ratio: 2.149717e-02	ci left: 6.176457e-01	ci right 6.311181e-01	k: 12488	n:20000
KS ci ratio: 7.291909e-02	ci left: 1.216273e-01	ci right 1.308816e-01	k: 2524	n:20000
SIX6   20000 perm   4 sec   (5252 perm/sec)   p_kst 1.262000e-01   p_cons 6.244000e-01   p_joint 1.330500e-01

Outputting figure to mutsig2_images.part000000000158/SIX6.3_749_20000_0.1262_0.6244_0.13305.png
                gene_name: SIX6
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 51 percent done.
SKAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.981388e-01	ci left: 7.692674e-03	ci right 1.160097e-02	k: 95	n:10000
Cons ci ratio: 2.521293e-01	ci left: 2.062036e-02	ci right 2.666153e-02	k: 235	n:10000
KS ci ratio: 1.555655e-01	ci left: 5.503869e-02	ci right 6.441983e-02	k: 596	n:10000
SKAP2   10000 perm   2 sec   (5617 perm/sec)   p_kst 5.960000e-02   p_cons 2.350000e-02   p_joint 9.500000e-03

Joint ci ratio: 2.104574e-01	ci left: 1.525391e-02	ci right 1.888845e-02	k: 340	n:20000
Cons ci ratio: 1.760084e-01	ci left: 2.206683e-02	ci right 2.637302e-02	k: 483	n:20000
KS ci ratio: 1.080911e-01	ci left: 5.835555e-02	ci right 6.507257e-02	k: 1233	n:20000
SKAP2   20000 perm   4 sec   (5210 perm/sec)   p_kst 6.165000e-02   p_cons 2.415000e-02   p_joint 1.700000e-02

Joint ci ratio: 1.325343e-01	ci left: 2.645263e-02	ci right 3.023945e-02	k: 849	n:30000
Cons ci ratio: 1.436101e-01	ci left: 2.249062e-02	ci right 2.600234e-02	k: 726	n:30000
KS ci ratio: 8.879470e-02	ci left: 5.828508e-02	ci right 6.373365e-02	k: 1829	n:30000
SKAP2   30000 perm   6 sec   (4935 perm/sec)   p_kst 6.096667e-02   p_cons 2.420000e-02   p_joint 2.830000e-02

Joint ci ratio: 1.422723e-01	ci left: 1.729850e-02	ci right 1.997203e-02	k: 744	n:40000
Cons ci ratio: 1.159598e-01	ci left: 2.616218e-02	ci right 2.940686e-02	k: 1110	n:40000
KS ci ratio: 7.744098e-02	ci left: 5.786399e-02	ci right 6.255011e-02	k: 2407	n:40000
SKAP2   40000 perm   8 sec   (4827 perm/sec)   p_kst 6.017500e-02   p_cons 2.775000e-02   p_joint 1.860000e-02

Joint ci ratio: 1.382709e-01	ci left: 1.472515e-02	ci right 1.693159e-02	k: 790	n:50000
Cons ci ratio: 1.037466e-01	ci left: 2.631798e-02	ci right 2.921719e-02	k: 1387	n:50000
KS ci ratio: 6.916771e-02	ci left: 5.826843e-02	ci right 6.246279e-02	k: 3017	n:50000
SKAP2   50000 perm   11 sec   (4722 perm/sec)   p_kst 6.034000e-02   p_cons 2.774000e-02   p_joint 1.580000e-02

Joint ci ratio: 1.359526e-01	ci left: 1.273681e-02	ci right 1.461067e-02	k: 819	n:60000
Cons ci ratio: 9.449175e-02	ci left: 2.656423e-02	ci right 2.921503e-02	k: 1672	n:60000
KS ci ratio: 6.297122e-02	ci left: 5.875309e-02	ci right 6.258954e-02	k: 3639	n:60000
SKAP2   60000 perm   13 sec   (4629 perm/sec)   p_kst 6.065000e-02   p_cons 2.786667e-02   p_joint 1.365000e-02

Joint ci ratio: 1.213595e-01	ci left: 1.379376e-02	ci right 1.558966e-02	k: 1027	n:70000
Cons ci ratio: 8.674987e-02	ci left: 2.711196e-02	ci right 2.958449e-02	k: 1983	n:70000
KS ci ratio: 5.810128e-02	ci left: 5.928040e-02	ci right 6.284180e-02	k: 4273	n:70000
SKAP2   70000 perm   15 sec   (4542 perm/sec)   p_kst 6.104286e-02   p_cons 2.832857e-02   p_joint 1.467143e-02

Joint ci ratio: 1.081299e-01	ci left: 1.528785e-02	ci right 1.704749e-02	k: 1292	n:80000
Cons ci ratio: 8.137696e-02	ci left: 2.703924e-02	ci right 2.934515e-02	k: 2254	n:80000
KS ci ratio: 5.438779e-02	ci left: 5.931423e-02	ci right 6.264270e-02	k: 4877	n:80000
SKAP2   80000 perm   18 sec   (4473 perm/sec)   p_kst 6.096250e-02   p_cons 2.817500e-02   p_joint 1.615000e-02

Joint ci ratio: 1.164007e-01	ci left: 1.171958e-02	ci right 1.317876e-02	k: 1119	n:90000
Cons ci ratio: 7.704980e-02	ci left: 2.687736e-02	ci right 2.904210e-02	k: 2515	n:90000
KS ci ratio: 5.122640e-02	ci left: 5.952186e-02	ci right 6.266206e-02	k: 5497	n:90000
SKAP2   90000 perm   20 sec   (4406 perm/sec)   p_kst 6.107778e-02   p_cons 2.794444e-02   p_joint 1.243333e-02

Joint ci ratio: 1.209785e-01	ci left: 9.761057e-03	ci right 1.102758e-02	k: 1038	n:100000
Cons ci ratio: 7.352390e-02	ci left: 2.662281e-02	ci right 2.866471e-02	k: 2763	n:100000
KS ci ratio: 4.863111e-02	ci left: 5.952439e-02	ci right 6.250113e-02	k: 6100	n:100000
SKAP2   100000 perm   23 sec   (4339 perm/sec)   p_kst 6.100000e-02   p_cons 2.763000e-02   p_joint 1.038000e-02

Joint ci ratio: 1.073270e-01	ci left: 1.133834e-02	ci right 1.263304e-02	k: 1317	n:110000
Cons ci ratio: 7.022594e-02	ci left: 2.657726e-02	ci right 2.852049e-02	k: 3029	n:110000
KS ci ratio: 4.634259e-02	ci left: 5.965566e-02	ci right 6.249481e-02	k: 6717	n:110000
SKAP2   110000 perm   26 sec   (4270 perm/sec)   p_kst 6.106364e-02   p_cons 2.753636e-02   p_joint 1.197273e-02

Joint ci ratio: 1.035190e-01	ci left: 1.119668e-02	ci right 1.242708e-02	k: 1416	n:120000
Cons ci ratio: 6.720963e-02	ci left: 2.663937e-02	ci right 2.850022e-02	k: 3307	n:120000
KS ci ratio: 4.446255e-02	ci left: 5.947916e-02	ci right 6.219211e-02	k: 7299	n:120000
SKAP2   120000 perm   29 sec   (4198 perm/sec)   p_kst 6.082500e-02   p_cons 2.755833e-02   p_joint 1.180000e-02

Joint ci ratio: 1.001562e-01	ci left: 1.106251e-02	ci right 1.223635e-02	k: 1513	n:130000
Cons ci ratio: 6.434864e-02	ci left: 2.686003e-02	ci right 2.865343e-02	k: 3607	n:130000
KS ci ratio: 4.274223e-02	ci left: 5.946889e-02	ci right 6.207382e-02	k: 7899	n:130000
SKAP2   130000 perm   31 sec   (4128 perm/sec)   p_kst 6.076154e-02   p_cons 2.774615e-02   p_joint 1.163846e-02

Joint ci ratio: 1.185442e-01	ci left: 7.290362e-03	ci right 8.215915e-03	k: 1084	n:140000
Cons ci ratio: 6.675888e-02	ci left: 2.323270e-02	ci right 2.484424e-02	k: 3364	n:140000
KS ci ratio: 4.121246e-02	ci left: 5.944768e-02	ci right 6.195626e-02	k: 8497	n:140000
SKAP2   140000 perm   34 sec   (4062 perm/sec)   p_kst 6.069286e-02   p_cons 2.402857e-02   p_joint 7.742857e-03

Joint ci ratio: 1.156069e-01	ci left: 7.166712e-03	ci right 8.052481e-03	k: 1140	n:150000
Cons ci ratio: 6.475663e-02	ci left: 2.307388e-02	ci right 2.462460e-02	k: 3576	n:150000
KS ci ratio: 3.968526e-02	ci left: 5.986005e-02	ci right 6.229028e-02	k: 9160	n:150000
SKAP2   150000 perm   38 sec   (3997 perm/sec)   p_kst 6.106667e-02   p_cons 2.384000e-02   p_joint 7.600000e-03

Joint ci ratio: 1.083624e-01	ci left: 7.672686e-03	ci right 8.557777e-03	k: 1297	n:160000
Cons ci ratio: 6.257836e-02	ci left: 2.318788e-02	ci right 2.469194e-02	k: 3829	n:160000
KS ci ratio: 3.840570e-02	ci left: 5.995602e-02	ci right 6.230992e-02	k: 9780	n:160000
SKAP2   160000 perm   41 sec   (3934 perm/sec)   p_kst 6.112500e-02   p_cons 2.393125e-02   p_joint 8.106250e-03

Joint ci ratio: 1.092398e-01	ci left: 7.106792e-03	ci right 7.933665e-03	k: 1277	n:170000
Cons ci ratio: 6.076638e-02	ci left: 2.316754e-02	ci right 2.462523e-02	k: 4061	n:170000
KS ci ratio: 3.716826e-02	ci left: 6.026921e-02	ci right 6.255754e-02	k: 10439	n:170000
SKAP2   170000 perm   44 sec   (3875 perm/sec)   p_kst 6.140588e-02   p_cons 2.388824e-02   p_joint 7.511765e-03

Joint ci ratio: 1.089199e-01	ci left: 6.755135e-03	ci right 7.538642e-03	k: 1285	n:180000
Cons ci ratio: 5.908205e-02	ci left: 2.316645e-02	ci right 2.458228e-02	k: 4296	n:180000
KS ci ratio: 3.611953e-02	ci left: 6.030630e-02	ci right 6.253008e-02	k: 11054	n:180000
SKAP2   180000 perm   47 sec   (3817 perm/sec)   p_kst 6.141111e-02   p_cons 2.386667e-02   p_joint 7.138889e-03

Joint ci ratio: 1.002091e-01	ci left: 7.588928e-03	ci right 8.394613e-03	k: 1517	n:190000
Cons ci ratio: 5.737500e-02	ci left: 2.329051e-02	ci right 2.467143e-02	k: 4555	n:190000
KS ci ratio: 3.510518e-02	ci left: 6.050211e-02	ci right 6.266919e-02	k: 11700	n:190000
SKAP2   190000 perm   50 sec   (3764 perm/sec)   p_kst 6.157895e-02   p_cons 2.397368e-02   p_joint 7.984211e-03

Joint ci ratio: 1.045116e-01	ci left: 6.619789e-03	ci right 7.354610e-03	k: 1396	n:200000
Cons ci ratio: 5.587326e-02	ci left: 2.334845e-02	ci right 2.469540e-02	k: 4803	n:200000
KS ci ratio: 3.422940e-02	ci left: 6.048568e-02	ci right 6.259705e-02	k: 12307	n:200000
SKAP2   200000 perm   54 sec   (3709 perm/sec)   p_kst 6.153500e-02   p_cons 2.401500e-02   p_joint 6.980000e-03

Joint ci ratio: 1.006491e-01	ci left: 6.810327e-03	ci right 7.536709e-03	k: 1505	n:210000
Cons ci ratio: 5.447253e-02	ci left: 2.341069e-02	ci right 2.472630e-02	k: 5053	n:210000
KS ci ratio: 3.340778e-02	ci left: 6.049977e-02	ci right 6.255997e-02	k: 12920	n:210000
SKAP2   210000 perm   57 sec   (3656 perm/sec)   p_kst 6.152381e-02   p_cons 2.406190e-02   p_joint 7.166667e-03

Joint ci ratio: 9.392926e-02	ci left: 7.485449e-03	ci right 8.227606e-03	k: 1727	n:220000
Cons ci ratio: 5.333723e-02	ci left: 2.332409e-02	ci right 2.460668e-02	k: 5271	n:220000
KS ci ratio: 3.268639e-02	ci left: 6.035978e-02	ci right 6.236998e-02	k: 13499	n:220000
SKAP2   220000 perm   61 sec   (3606 perm/sec)   p_kst 6.135909e-02   p_cons 2.395909e-02   p_joint 7.850000e-03

Outputting figure to mutsig2_images.part000000000158/SKAP2.3_1128_220000_0.061359_0.023959_0.00785.png
                gene_name: SKAP2
               theta_stop: 0.094 
                    nperm: 220000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.060 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.0078 
     ci_joint_bounds_left: 0.0075 
    ci_joint_bounds_right: 0.0082 

Current progress: 52 percent done.
SKIV2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.033322e-01	ci left: 1.192622e-01	ci right 1.323567e-01	k: 1257	n:10000
Cons ci ratio: 2.130330e-02	ci left: 7.636486e-01	ci right 7.801928e-01	k: 7720	n:10000
KS ci ratio: 3.035655e-01	ci left: 1.390981e-02	ci right 1.897755e-02	k: 163	n:10000
SKIV2L   10000 perm   2 sec   (5210 perm/sec)   p_kst 1.630000e-02   p_cons 7.720000e-01   p_joint 1.257000e-01

Joint ci ratio: 1.227043e-01	ci left: 4.556361e-02	ci right 5.156850e-02	k: 970	n:20000
Cons ci ratio: 1.514280e-02	ci left: 7.642550e-01	ci right 7.759664e-01	k: 15403	n:20000
KS ci ratio: 2.201831e-01	ci left: 1.388097e-02	ci right 1.736192e-02	k: 311	n:20000
SKIV2L   20000 perm   4 sec   (4648 perm/sec)   p_kst 1.555000e-02   p_cons 7.701500e-01   p_joint 4.850000e-02

Joint ci ratio: 1.185439e-01	ci left: 3.307835e-02	ci right 3.727896e-02	k: 1054	n:30000
Cons ci ratio: 1.238906e-02	ci left: 7.646245e-01	ci right 7.741899e-01	k: 23083	n:30000
KS ci ratio: 1.790047e-01	ci left: 1.432368e-02	ci right 1.717122e-02	k: 471	n:30000
SKIV2L   30000 perm   7 sec   (4037 perm/sec)   p_kst 1.570000e-02   p_cons 7.694333e-01   p_joint 3.513333e-02

Joint ci ratio: 1.065160e-01	ci left: 3.100294e-02	ci right 3.451532e-02	k: 1309	n:40000
Cons ci ratio: 1.066069e-02	ci left: 7.675545e-01	ci right 7.758060e-01	k: 30868	n:40000
KS ci ratio: 1.572378e-01	ci left: 1.409589e-02	ci right 1.652521e-02	k: 611	n:40000
SKIV2L   40000 perm   10 sec   (3833 perm/sec)   p_kst 1.527500e-02   p_cons 7.717000e-01   p_joint 3.272500e-02

Joint ci ratio: 8.847148e-02	ci left: 3.610610e-02	ci right 3.946784e-02	k: 1888	n:50000
Cons ci ratio: 9.535748e-03	ci left: 7.679751e-01	ci right 7.753534e-01	k: 38584	n:50000
KS ci ratio: 1.433255e-01	ci left: 1.368265e-02	ci right 1.581423e-02	k: 736	n:50000
SKIV2L   50000 perm   13 sec   (3835 perm/sec)   p_kst 1.472000e-02   p_cons 7.716800e-01   p_joint 3.776000e-02

Joint ci ratio: 8.726916e-02	ci left: 3.111177e-02	ci right 3.396701e-02	k: 1951	n:60000
Cons ci ratio: 8.711411e-03	ci left: 7.680353e-01	ci right 7.747718e-01	k: 46285	n:60000
KS ci ratio: 1.308680e-01	ci left: 1.376835e-02	ci right 1.571234e-02	k: 883	n:60000
SKIV2L   60000 perm   16 sec   (3820 perm/sec)   p_kst 1.471667e-02   p_cons 7.714167e-01   p_joint 3.251667e-02

Joint ci ratio: 6.124605e-02	ci left: 5.358996e-02	ci right 5.698988e-02	k: 3869	n:70000
Cons ci ratio: 7.761818e-03	ci left: 7.815931e-01	ci right 7.876976e-01	k: 54926	n:70000
KS ci ratio: 1.143374e-01	ci left: 1.556925e-02	ci right 1.747113e-02	k: 1155	n:70000
SKIV2L   70000 perm   18 sec   (3801 perm/sec)   p_kst 1.650000e-02   p_cons 7.846571e-01   p_joint 5.527143e-02

Joint ci ratio: 6.356919e-02	ci left: 4.393074e-02	ci right 4.682734e-02	k: 3629	n:80000
Cons ci ratio: 7.279999e-03	ci left: 7.808807e-01	ci right 7.865987e-01	k: 62700	n:80000
KS ci ratio: 1.065495e-01	ci left: 1.575029e-02	ci right 1.753501e-02	k: 1330	n:80000
SKIV2L   80000 perm   21 sec   (3760 perm/sec)   p_kst 1.662500e-02   p_cons 7.837500e-01   p_joint 4.536250e-02

Joint ci ratio: 5.967959e-02	ci left: 4.437761e-02	ci right 4.711843e-02	k: 4116	n:90000
Cons ci ratio: 6.882204e-03	ci left: 7.801249e-01	ci right 7.855235e-01	k: 70455	n:90000
KS ci ratio: 1.007772e-01	ci left: 1.569947e-02	ci right 1.737634e-02	k: 1487	n:90000
SKIV2L   90000 perm   24 sec   (3719 perm/sec)   p_kst 1.652222e-02   p_cons 7.828333e-01   p_joint 4.573333e-02

Joint ci ratio: 5.296038e-02	ci left: 5.056277e-02	ci right 5.332329e-02	k: 5193	n:100000
Cons ci ratio: 6.541382e-03	ci left: 7.796186e-01	ci right 7.847450e-01	k: 78219	n:100000
KS ci ratio: 9.597027e-02	ci left: 1.562186e-02	ci right 1.720637e-02	k: 1640	n:100000
SKIV2L   100000 perm   27 sec   (3683 perm/sec)   p_kst 1.640000e-02   p_cons 7.821900e-01   p_joint 5.193000e-02

Outputting figure to mutsig2_images.part000000000158/SKIV2L.3_3853_100000_0.0164_0.78219_0.05193.png
                gene_name: SKIV2L
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.053 

Current progress: 54 percent done.
SKIV2L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.622758e-02	ci left: 4.085072e-01	ci right 4.279405e-01	k: 4182	n:10000
Cons ci ratio: 4.264082e-03	ci left: 9.861030e-01	ci right 9.904055e-01	k: 9884	n:10000
KS ci ratio: 5.400106e-02	ci left: 3.356792e-01	ci right 3.544111e-01	k: 3450	n:10000
SKIV2L2   10000 perm   2 sec   (5393 perm/sec)   p_kst 3.450000e-01   p_cons 9.884000e-01   p_joint 4.182000e-01

Outputting figure to mutsig2_images.part000000000158/SKIV2L2.3_3237_10000_0.345_0.9884_0.4182.png
                gene_name: SKIV2L2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 56 percent done.
SLAMF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.881357e-02	ci left: 8.050140e-01	ci right 8.204033e-01	k: 8128	n:10000
Cons ci ratio: 1.355138e-02	ci left: 8.870840e-01	ci right 8.992859e-01	k: 8933	n:10000
KS ci ratio: 3.393222e-02	ci left: 5.618315e-01	ci right 5.813268e-01	k: 5716	n:10000
SLAMF6   10000 perm   2 sec   (6354 perm/sec)   p_kst 5.716000e-01   p_cons 8.933000e-01   p_joint 8.128000e-01

Outputting figure to mutsig2_images.part000000000158/SLAMF6.3_1031_10000_0.5716_0.8933_0.8128.png
                gene_name: SLAMF6
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 57 percent done.
SLAMF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
Cons ci ratio: 1.000817e-01	ci left: 1.263042e-01	ci right 1.397104e-01	k: 1329	n:10000
KS ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
SLAMF8   10000 perm   2 sec   (6320 perm/sec)   p_kst 1.200000e-03   p_cons 1.329000e-01   p_joint 3.900000e-03

Joint ci ratio: 6.042186e-01	ci left: 1.471505e-03	ci right 2.780040e-03	k: 41	n:20000
Cons ci ratio: 7.031306e-02	ci left: 1.297506e-01	ci right 1.392560e-01	k: 2689	n:20000
KS ci ratio: 7.682562e-01	ci left: 8.090923e-04	ci right 1.844697e-03	k: 25	n:20000
SLAMF8   20000 perm   4 sec   (5583 perm/sec)   p_kst 1.250000e-03   p_cons 1.344500e-01   p_joint 2.050000e-03

Joint ci ratio: 3.818765e-01	ci left: 2.833370e-03	ci right 4.198905e-03	k: 104	n:30000
Cons ci ratio: 5.379733e-02	ci left: 1.463064e-01	ci right 1.544281e-01	k: 4510	n:30000
KS ci ratio: 6.440358e-01	ci left: 8.406024e-04	ci right 1.660923e-03	k: 36	n:30000
SLAMF8   30000 perm   6 sec   (5314 perm/sec)   p_kst 1.200000e-03   p_cons 1.503333e-01   p_joint 3.466667e-03

Joint ci ratio: 6.441379e-01	ci left: 6.304261e-04	ci right 1.245764e-03	k: 36	n:40000
Cons ci ratio: 5.041443e-02	ci left: 1.279799e-01	ci right 1.346237e-01	k: 5251	n:40000
KS ci ratio: 5.654566e-01	ci left: 8.634696e-04	ci right 1.562198e-03	k: 47	n:40000
SLAMF8   40000 perm   8 sec   (5133 perm/sec)   p_kst 1.175000e-03   p_cons 1.312750e-01   p_joint 9.000000e-04

Joint ci ratio: 4.750417e-01	ci left: 1.038628e-03	ci right 1.701445e-03	k: 67	n:50000
Cons ci ratio: 4.511189e-02	ci left: 1.282324e-01	ci right 1.341705e-01	k: 6559	n:50000
KS ci ratio: 4.821953e-01	ci left: 1.003451e-03	ci right 1.656661e-03	k: 65	n:50000
SLAMF8   50000 perm   10 sec   (4912 perm/sec)   p_kst 1.300000e-03   p_cons 1.311800e-01   p_joint 1.340000e-03

Joint ci ratio: 3.124379e-01	ci left: 2.208423e-03	ci right 3.040850e-03	k: 156	n:60000
Cons ci ratio: 4.119644e-02	ci left: 1.284090e-01	ci right 1.338268e-01	k: 7866	n:60000
KS ci ratio: 3.461097e-01	ci left: 1.764866e-03	ci right 2.517926e-03	k: 127	n:60000
SLAMF8   60000 perm   13 sec   (4782 perm/sec)   p_kst 2.116667e-03   p_cons 1.311000e-01   p_joint 2.600000e-03

Joint ci ratio: 2.499992e-01	ci left: 3.062660e-03	ci right 3.950710e-03	k: 244	n:70000
Cons ci ratio: 3.820563e-02	ci left: 1.282254e-01	ci right 1.332339e-01	k: 9150	n:70000
KS ci ratio: 3.251986e-01	ci left: 1.735145e-03	ci right 2.421465e-03	k: 144	n:70000
SLAMF8   70000 perm   15 sec   (4683 perm/sec)   p_kst 2.057143e-03   p_cons 1.307143e-01   p_joint 3.485714e-03

Joint ci ratio: 2.657441e-01	ci left: 2.352308e-03	ci right 3.084496e-03	k: 216	n:80000
Cons ci ratio: 3.584125e-02	ci left: 1.277388e-01	ci right 1.324131e-01	k: 10405	n:80000
KS ci ratio: 3.003288e-01	ci left: 1.806271e-03	ci right 2.455683e-03	k: 169	n:80000
SLAMF8   80000 perm   18 sec   (4510 perm/sec)   p_kst 2.112500e-03   p_cons 1.300625e-01   p_joint 2.700000e-03

Joint ci ratio: 3.606266e-01	ci left: 1.075250e-03	ci right 1.557815e-03	k: 117	n:90000
Cons ci ratio: 3.370176e-02	ci left: 1.284711e-01	ci right 1.328861e-01	k: 11760	n:90000
KS ci ratio: 3.208712e-01	ci left: 1.390356e-03	ci right 1.931467e-03	k: 148	n:90000
SLAMF8   90000 perm   20 sec   (4435 perm/sec)   p_kst 1.644444e-03   p_cons 1.306667e-01   p_joint 1.300000e-03

Joint ci ratio: 2.658167e-01	ci left: 1.881783e-03	ci right 2.467692e-03	k: 216	n:100000
Cons ci ratio: 3.201146e-02	ci left: 1.283087e-01	ci right 1.324928e-01	k: 13039	n:100000
KS ci ratio: 3.077332e-01	ci left: 1.371068e-03	ci right 1.878542e-03	k: 161	n:100000
SLAMF8   100000 perm   23 sec   (4363 perm/sec)   p_kst 1.610000e-03   p_cons 1.303900e-01   p_joint 2.160000e-03

Joint ci ratio: 2.683326e-01	ci left: 1.676758e-03	ci right 2.204601e-03	k: 212	n:110000
Cons ci ratio: 3.049241e-02	ci left: 1.286230e-01	ci right 1.326147e-01	k: 14367	n:110000
KS ci ratio: 2.879604e-01	ci left: 1.439918e-03	ci right 1.932408e-03	k: 184	n:110000
SLAMF8   110000 perm   26 sec   (4290 perm/sec)   p_kst 1.672727e-03   p_cons 1.306091e-01   p_joint 1.927273e-03

Joint ci ratio: 3.040392e-01	ci left: 1.173313e-03	ci right 1.601367e-03	k: 165	n:120000
Cons ci ratio: 2.914849e-02	ci left: 1.290627e-01	ci right 1.328885e-01	k: 15716	n:120000
KS ci ratio: 2.783512e-01	ci left: 1.420565e-03	ci right 1.887382e-03	k: 197	n:120000
SLAMF8   120000 perm   28 sec   (4221 perm/sec)   p_kst 1.641667e-03   p_cons 1.309667e-01   p_joint 1.375000e-03

Joint ci ratio: 2.969743e-01	ci left: 1.139955e-03	ci right 1.544354e-03	k: 173	n:130000
Cons ci ratio: 2.798299e-02	ci left: 1.293156e-01	ci right 1.329932e-01	k: 17049	n:130000
KS ci ratio: 2.696438e-01	ci left: 1.404421e-03	ci right 1.849054e-03	k: 210	n:130000
SLAMF8   130000 perm   31 sec   (4155 perm/sec)   p_kst 1.615385e-03   p_cons 1.311462e-01   p_joint 1.330769e-03

Joint ci ratio: 2.880126e-01	ci left: 1.131337e-03	ci right 1.518363e-03	k: 184	n:140000
Cons ci ratio: 2.701043e-02	ci left: 1.290023e-01	ci right 1.325415e-01	k: 18307	n:140000
KS ci ratio: 2.640777e-01	ci left: 1.364086e-03	ci right 1.785561e-03	k: 219	n:140000
SLAMF8   140000 perm   34 sec   (4089 perm/sec)   p_kst 1.564286e-03   p_cons 1.307643e-01   p_joint 1.314286e-03

Joint ci ratio: 2.249698e-01	ci left: 1.792834e-03	ci right 2.253422e-03	k: 302	n:150000
Cons ci ratio: 2.608746e-02	ci left: 1.291240e-01	ci right 1.325436e-01	k: 19624	n:150000
KS ci ratio: 2.538934e-01	ci left: 1.385362e-03	ci right 1.794291e-03	k: 237	n:150000
SLAMF8   150000 perm   37 sec   (4024 perm/sec)   p_kst 1.580000e-03   p_cons 1.308267e-01   p_joint 2.013333e-03

Joint ci ratio: 2.477280e-01	ci left: 1.369062e-03	ci right 1.761855e-03	k: 249	n:160000
Cons ci ratio: 2.525376e-02	ci left: 1.292260e-01	ci right 1.325374e-01	k: 20940	n:160000
KS ci ratio: 2.401500e-01	ci left: 1.462959e-03	ci right 1.867942e-03	k: 265	n:160000
SLAMF8   160000 perm   40 sec   (3969 perm/sec)   p_kst 1.656250e-03   p_cons 1.308750e-01   p_joint 1.556250e-03

Joint ci ratio: 2.415298e-01	ci left: 1.360312e-03	ci right 1.739366e-03	k: 262	n:170000
Cons ci ratio: 2.448190e-02	ci left: 1.294405e-01	ci right 1.326545e-01	k: 22277	n:170000
KS ci ratio: 2.344909e-01	ci left: 1.448826e-03	ci right 1.839074e-03	k: 278	n:170000
SLAMF8   170000 perm   44 sec   (3902 perm/sec)   p_kst 1.635294e-03   p_cons 1.310412e-01   p_joint 1.541176e-03

Joint ci ratio: 2.078462e-01	ci left: 1.767280e-03	ci right 2.182355e-03	k: 354	n:180000
Cons ci ratio: 2.378951e-02	ci left: 1.295108e-01	ci right 1.326344e-01	k: 23592	n:180000
KS ci ratio: 2.224486e-01	ci left: 1.530714e-03	ci right 1.918950e-03	k: 309	n:180000
SLAMF8   180000 perm   47 sec   (3815 perm/sec)   p_kst 1.716667e-03   p_cons 1.310667e-01   p_joint 1.966667e-03

Joint ci ratio: 2.280534e-01	ci left: 1.375644e-03	ci right 1.734576e-03	k: 294	n:190000
Cons ci ratio: 2.316664e-02	ci left: 1.294388e-01	ci right 1.324778e-01	k: 24881	n:190000
KS ci ratio: 2.172559e-01	ci left: 1.524750e-03	ci right 1.901241e-03	k: 324	n:190000
SLAMF8   190000 perm   51 sec   (3759 perm/sec)   p_kst 1.705263e-03   p_cons 1.309526e-01   p_joint 1.547368e-03

Joint ci ratio: 1.985580e-01	ci left: 1.751905e-03	ci right 2.142756e-03	k: 388	n:200000
Cons ci ratio: 2.257934e-02	ci left: 1.294844e-01	ci right 1.324464e-01	k: 26192	n:200000
KS ci ratio: 2.133555e-01	ci left: 1.505276e-03	ci right 1.869411e-03	k: 336	n:200000
SLAMF8   200000 perm   54 sec   (3708 perm/sec)   p_kst 1.680000e-03   p_cons 1.309600e-01   p_joint 1.940000e-03

Joint ci ratio: 1.943577e-01	ci left: 1.745451e-03	ci right 2.125650e-03	k: 405	n:210000
Cons ci ratio: 2.205117e-02	ci left: 1.293559e-01	ci right 1.322448e-01	k: 27467	n:210000
KS ci ratio: 2.061379e-01	ci left: 1.541883e-03	ci right 1.900667e-03	k: 360	n:210000
SLAMF8   210000 perm   57 sec   (3658 perm/sec)   p_kst 1.714286e-03   p_cons 1.307952e-01   p_joint 1.928571e-03

Joint ci ratio: 1.983204e-01	ci left: 1.596948e-03	ci right 1.952749e-03	k: 389	n:220000
Cons ci ratio: 2.152096e-02	ci left: 1.296334e-01	ci right 1.324581e-01	k: 28829	n:220000
KS ci ratio: 1.998666e-01	ci left: 1.571032e-03	ci right 1.924121e-03	k: 383	n:220000
SLAMF8   220000 perm   61 sec   (3607 perm/sec)   p_kst 1.740909e-03   p_cons 1.310409e-01   p_joint 1.768182e-03

Joint ci ratio: 2.014569e-01	ci left: 1.477943e-03	ci right 1.813078e-03	k: 377	n:230000
Cons ci ratio: 2.103284e-02	ci left: 1.298270e-01	ci right 1.325910e-01	k: 30177	n:230000
KS ci ratio: 1.968173e-01	ci left: 1.552308e-03	ci right 1.895227e-03	k: 395	n:230000
SLAMF8   230000 perm   65 sec   (3559 perm/sec)   p_kst 1.717391e-03   p_cons 1.312043e-01   p_joint 1.639130e-03

Joint ci ratio: 2.093795e-01	ci left: 1.305682e-03	ci right 1.614892e-03	k: 349	n:240000
Cons ci ratio: 2.060321e-02	ci left: 1.297106e-01	ci right 1.324150e-01	k: 31454	n:240000
KS ci ratio: 1.924909e-01	ci left: 1.558974e-03	ci right 1.894909e-03	k: 413	n:240000
SLAMF8   240000 perm   68 sec   (3512 perm/sec)   p_kst 1.720833e-03   p_cons 1.310583e-01   p_joint 1.454167e-03

Joint ci ratio: 2.169667e-01	ci left: 1.162569e-03	ci right 1.449194e-03	k: 325	n:250000
Cons ci ratio: 2.019000e-02	ci left: 1.297036e-01	ci right 1.323530e-01	k: 32756	n:250000
KS ci ratio: 1.890966e-01	ci left: 1.553749e-03	ci right 1.881976e-03	k: 428	n:250000
SLAMF8   250000 perm   72 sec   (3467 perm/sec)   p_kst 1.712000e-03   p_cons 1.310240e-01   p_joint 1.300000e-03

Joint ci ratio: 2.118295e-01	ci left: 1.176090e-03	ci right 1.458292e-03	k: 341	n:260000
Cons ci ratio: 1.979902e-02	ci left: 1.297168e-01	ci right 1.323145e-01	k: 34063	n:260000
KS ci ratio: 1.850426e-01	ci left: 1.563645e-03	ci right 1.886087e-03	k: 447	n:260000
SLAMF8   260000 perm   76 sec   (3423 perm/sec)   p_kst 1.719231e-03   p_cons 1.310115e-01   p_joint 1.311538e-03

Joint ci ratio: 2.088001e-01	ci left: 1.167617e-03	ci right 1.443267e-03	k: 351	n:270000
Cons ci ratio: 1.942896e-02	ci left: 1.297405e-01	ci right 1.322896e-01	k: 35373	n:270000
KS ci ratio: 1.818247e-01	ci left: 1.562270e-03	ci right 1.878209e-03	k: 463	n:270000
SLAMF8   270000 perm   80 sec   (3379 perm/sec)   p_kst 1.714815e-03   p_cons 1.310111e-01   p_joint 1.300000e-03

Joint ci ratio: 2.127759e-01	ci left: 1.081933e-03	ci right 1.342853e-03	k: 338	n:280000
Cons ci ratio: 1.905859e-02	ci left: 1.300049e-01	ci right 1.325099e-01	k: 36751	n:280000
KS ci ratio: 1.783970e-01	ci left: 1.567863e-03	ci right 1.878311e-03	k: 481	n:280000
SLAMF8   280000 perm   84 sec   (3335 perm/sec)   p_kst 1.717857e-03   p_cons 1.312536e-01   p_joint 1.207143e-03

Joint ci ratio: 2.085132e-01	ci left: 1.090355e-03	ci right 1.347366e-03	k: 352	n:290000
Cons ci ratio: 1.873208e-02	ci left: 1.299663e-01	ci right 1.324273e-01	k: 38046	n:290000
KS ci ratio: 1.741129e-01	ci left: 1.592909e-03	ci right 1.899945e-03	k: 505	n:290000
SLAMF8   290000 perm   88 sec   (3292 perm/sec)   p_kst 1.741379e-03   p_cons 1.311931e-01   p_joint 1.213793e-03

Joint ci ratio: 2.050570e-01	ci left: 1.091939e-03	ci right 1.344522e-03	k: 364	n:300000
Cons ci ratio: 1.840404e-02	ci left: 1.301498e-01	ci right 1.325706e-01	k: 39407	n:300000
KS ci ratio: 1.724196e-01	ci left: 1.571698e-03	ci right 1.871393e-03	k: 515	n:300000
SLAMF8   300000 perm   92 sec   (3254 perm/sec)   p_kst 1.716667e-03   p_cons 1.313567e-01   p_joint 1.213333e-03

Joint ci ratio: 2.031202e-01	ci left: 1.078141e-03	ci right 1.324884e-03	k: 371	n:310000
Cons ci ratio: 1.809853e-02	ci left: 1.302479e-01	ci right 1.326299e-01	k: 40745	n:310000
KS ci ratio: 1.707748e-01	ci left: 1.551869e-03	ci right 1.844669e-03	k: 525	n:310000
SLAMF8   310000 perm   97 sec   (3212 perm/sec)   p_kst 1.693548e-03   p_cons 1.314355e-01   p_joint 1.196774e-03

Joint ci ratio: 1.991440e-01	ci left: 1.088964e-03	ci right 1.332713e-03	k: 386	n:320000
Cons ci ratio: 1.783532e-02	ci left: 1.299884e-01	ci right 1.323308e-01	k: 41970	n:320000
KS ci ratio: 1.685473e-01	ci left: 1.545265e-03	ci right 1.832630e-03	k: 539	n:320000
SLAMF8   320000 perm   101 sec   (3176 perm/sec)   p_kst 1.684375e-03   p_cons 1.311563e-01   p_joint 1.206250e-03

Joint ci ratio: 1.880420e-01	ci left: 1.191498e-03	ci right 1.441634e-03	k: 433	n:330000
Cons ci ratio: 1.756222e-02	ci left: 1.300166e-01	ci right 1.323232e-01	k: 43285	n:330000
KS ci ratio: 1.665554e-01	ci left: 1.536180e-03	ci right 1.818141e-03	k: 552	n:330000
SLAMF8   330000 perm   105 sec   (3143 perm/sec)   p_kst 1.672727e-03   p_cons 1.311667e-01   p_joint 1.312121e-03

Joint ci ratio: 1.863339e-01	ci left: 1.178880e-03	ci right 1.423865e-03	k: 441	n:340000
Cons ci ratio: 1.729861e-02	ci left: 1.300786e-01	ci right 1.323513e-01	k: 44612	n:340000
KS ci ratio: 1.640528e-01	ci left: 1.538930e-03	ci right 1.816732e-03	k: 569	n:340000
SLAMF8   340000 perm   109 sec   (3109 perm/sec)   p_kst 1.673529e-03   p_cons 1.312118e-01   p_joint 1.297059e-03

Joint ci ratio: 1.876167e-01	ci left: 1.128854e-03	ci right 1.365242e-03	k: 435	n:350000
Cons ci ratio: 1.705400e-02	ci left: 1.300376e-01	ci right 1.322771e-01	k: 45904	n:350000
KS ci ratio: 1.615220e-01	ci left: 1.544295e-03	ci right 1.818347e-03	k: 587	n:350000
SLAMF8   350000 perm   114 sec   (3076 perm/sec)   p_kst 1.677143e-03   p_cons 1.311543e-01   p_joint 1.242857e-03

Joint ci ratio: 1.838584e-01	ci left: 1.145173e-03	ci right 1.379640e-03	k: 453	n:360000
Cons ci ratio: 1.681395e-02	ci left: 1.300738e-01	ci right 1.322821e-01	k: 47223	n:360000
KS ci ratio: 1.588425e-01	ci left: 1.554727e-03	ci right 1.825617e-03	k: 607	n:360000
SLAMF8   360000 perm   118 sec   (3043 perm/sec)   p_kst 1.686111e-03   p_cons 1.311750e-01   p_joint 1.258333e-03

Joint ci ratio: 1.810872e-01	ci left: 1.150332e-03	ci right 1.381916e-03	k: 467	n:370000
Cons ci ratio: 1.658828e-02	ci left: 1.300463e-01	ci right 1.322243e-01	k: 48519	n:370000
KS ci ratio: 1.567930e-01	ci left: 1.554243e-03	ci right 1.821226e-03	k: 623	n:370000
SLAMF8   370000 perm   123 sec   (3009 perm/sec)   p_kst 1.683784e-03   p_cons 1.311324e-01   p_joint 1.262162e-03

Joint ci ratio: 1.722839e-01	ci left: 1.243314e-03	ci right 1.480184e-03	k: 516	n:380000
Cons ci ratio: 1.636466e-02	ci left: 1.301149e-01	ci right 1.322644e-01	k: 49851	n:380000
KS ci ratio: 1.554302e-01	ci left: 1.541157e-03	ci right 1.803378e-03	k: 634	n:380000
SLAMF8   380000 perm   128 sec   (2967 perm/sec)   p_kst 1.668421e-03   p_cons 1.311868e-01   p_joint 1.357895e-03

Joint ci ratio: 1.673362e-01	ci left: 1.287546e-03	ci right 1.525089e-03	k: 547	n:390000
Cons ci ratio: 1.614385e-02	ci left: 1.302645e-01	ci right 1.323871e-01	k: 51216	n:390000
KS ci ratio: 1.529213e-01	ci left: 1.553410e-03	ci right 1.813058e-03	k: 655	n:390000
SLAMF8   390000 perm   133 sec   (2933 perm/sec)   p_kst 1.679487e-03   p_cons 1.313231e-01   p_joint 1.402564e-03

Joint ci ratio: 1.659798e-01	ci left: 1.276918e-03	ci right 1.510400e-03	k: 556	n:400000
Cons ci ratio: 1.594816e-02	ci left: 1.301726e-01	ci right 1.322678e-01	k: 52487	n:400000
KS ci ratio: 1.512028e-01	ci left: 1.550648e-03	ci right 1.806658e-03	k: 670	n:400000
SLAMF8   400000 perm   138 sec   (2900 perm/sec)   p_kst 1.675000e-03   p_cons 1.312175e-01   p_joint 1.390000e-03

Joint ci ratio: 1.637889e-01	ci left: 1.280850e-03	ci right 1.511655e-03	k: 571	n:410000
Cons ci ratio: 1.573635e-02	ci left: 1.304183e-01	ci right 1.324893e-01	k: 53895	n:410000
KS ci ratio: 1.494318e-01	ci left: 1.550384e-03	ci right 1.803084e-03	k: 686	n:410000
SLAMF8   410000 perm   143 sec   (2868 perm/sec)   p_kst 1.673171e-03   p_cons 1.314512e-01   p_joint 1.392683e-03

Joint ci ratio: 1.622369e-01	ci left: 1.275475e-03	ci right 1.502921e-03	k: 582	n:420000
Cons ci ratio: 1.553372e-02	ci left: 1.306383e-01	ci right 1.326858e-01	k: 55297	n:420000
KS ci ratio: 1.475116e-01	ci left: 1.554735e-03	ci right 1.804601e-03	k: 704	n:420000
SLAMF8   420000 perm   148 sec   (2840 perm/sec)   p_kst 1.676190e-03   p_cons 1.316595e-01   p_joint 1.385714e-03

Joint ci ratio: 1.607282e-01	ci left: 1.270360e-03	ci right 1.494584e-03	k: 593	n:430000
Cons ci ratio: 1.535338e-02	ci left: 1.306303e-01	ci right 1.326537e-01	k: 56605	n:430000
KS ci ratio: 1.456636e-01	ci left: 1.558904e-03	ci right 1.806028e-03	k: 722	n:430000
SLAMF8   430000 perm   153 sec   (2811 perm/sec)   p_kst 1.679070e-03   p_cons 1.316395e-01   p_joint 1.379070e-03

Joint ci ratio: 1.583462e-01	ci left: 1.280765e-03	ci right 1.503157e-03	k: 611	n:440000
Cons ci ratio: 1.518401e-02	ci left: 1.305503e-01	ci right 1.325500e-01	k: 57881	n:440000
KS ci ratio: 1.440782e-01	ci left: 1.558520e-03	ci right 1.802663e-03	k: 738	n:440000
SLAMF8   440000 perm   158 sec   (2782 perm/sec)   p_kst 1.677273e-03   p_cons 1.315477e-01   p_joint 1.388636e-03

Joint ci ratio: 1.564404e-01	ci left: 1.284324e-03	ci right 1.504398e-03	k: 626	n:450000
Cons ci ratio: 1.501106e-02	ci left: 1.306113e-01	ci right 1.325890e-01	k: 59219	n:450000
KS ci ratio: 1.420731e-01	ci left: 1.568883e-03	ci right 1.810939e-03	k: 759	n:450000
SLAMF8   450000 perm   163 sec   (2753 perm/sec)   p_kst 1.686667e-03   p_cons 1.315978e-01   p_joint 1.391111e-03

Joint ci ratio: 1.548436e-01	ci left: 1.283564e-03	ci right 1.501055e-03	k: 639	n:460000
Cons ci ratio: 1.485407e-02	ci left: 1.305138e-01	ci right 1.324691e-01	k: 60485	n:460000
KS ci ratio: 1.411486e-01	ci left: 1.555745e-03	ci right 1.794081e-03	k: 769	n:460000
SLAMF8   460000 perm   169 sec   (2724 perm/sec)   p_kst 1.671739e-03   p_cons 1.314891e-01   p_joint 1.389130e-03

Joint ci ratio: 1.532947e-01	ci left: 1.282848e-03	ci right 1.497843e-03	k: 652	n:470000
Cons ci ratio: 1.469382e-02	ci left: 1.305457e-01	ci right 1.324802e-01	k: 61810	n:470000
KS ci ratio: 1.398830e-01	ci left: 1.551384e-03	ci right 1.786743e-03	k: 783	n:470000
SLAMF8   470000 perm   174 sec   (2697 perm/sec)   p_kst 1.665957e-03   p_cons 1.315106e-01   p_joint 1.387234e-03

Joint ci ratio: 1.520201e-01	ci left: 1.278163e-03	ci right 1.490429e-03	k: 663	n:480000
Cons ci ratio: 1.453678e-02	ci left: 1.306054e-01	ci right 1.325199e-01	k: 63149	n:480000
KS ci ratio: 1.384772e-01	ci left: 1.551236e-03	ci right 1.784012e-03	k: 799	n:480000
SLAMF8   480000 perm   180 sec   (2670 perm/sec)   p_kst 1.664583e-03   p_cons 1.315604e-01   p_joint 1.381250e-03

Joint ci ratio: 1.503314e-01	ci left: 1.281532e-03	ci right 1.491781e-03	k: 678	n:490000
Cons ci ratio: 1.439047e-02	ci left: 1.305712e-01	ci right 1.324658e-01	k: 64443	n:490000
KS ci ratio: 1.369450e-01	ci left: 1.555047e-03	ci right 1.785603e-03	k: 817	n:490000
SLAMF8   490000 perm   185 sec   (2643 perm/sec)   p_kst 1.667347e-03   p_cons 1.315163e-01   p_joint 1.383673e-03

Joint ci ratio: 1.320267e-01	ci left: 1.643780e-03	ci right 1.878054e-03	k: 879	n:500000
Cons ci ratio: 1.424424e-02	ci left: 1.306063e-01	ci right 1.324820e-01	k: 65771	n:500000
KS ci ratio: 1.361988e-01	ci left: 1.541330e-03	ci right 1.768507e-03	k: 826	n:500000
SLAMF8   500000 perm   191 sec   (2618 perm/sec)   p_kst 1.652000e-03   p_cons 1.315420e-01   p_joint 1.758000e-03

Joint ci ratio: 1.305512e-01	ci left: 1.649477e-03	ci right 1.881732e-03	k: 899	n:510000
Cons ci ratio: 1.410177e-02	ci left: 1.306499e-01	ci right 1.325073e-01	k: 67104	n:510000
KS ci ratio: 1.349002e-01	ci left: 1.541417e-03	ci right 1.766266e-03	k: 842	n:510000
SLAMF8   510000 perm   197 sec   (2592 perm/sec)   p_kst 1.650980e-03   p_cons 1.315765e-01   p_joint 1.762745e-03

Joint ci ratio: 1.289837e-01	ci left: 1.658691e-03	ci right 1.889224e-03	k: 921	n:520000
Cons ci ratio: 1.396244e-02	ci left: 1.307091e-01	ci right 1.325488e-01	k: 68446	n:520000
KS ci ratio: 1.334049e-01	ci left: 1.547087e-03	ci right 1.770063e-03	k: 861	n:520000
SLAMF8   520000 perm   203 sec   (2567 perm/sec)   p_kst 1.655769e-03   p_cons 1.316269e-01   p_joint 1.771154e-03

Joint ci ratio: 1.447871e-01	ci left: 1.281122e-03	ci right 1.482883e-03	k: 731	n:530000
Cons ci ratio: 1.382795e-02	ci left: 1.307530e-01	ci right 1.325755e-01	k: 69781	n:530000
KS ci ratio: 1.325625e-01	ci left: 1.537960e-03	ci right 1.758111e-03	k: 872	n:530000
SLAMF8   530000 perm   208 sec   (2542 perm/sec)   p_kst 1.645283e-03   p_cons 1.316623e-01   p_joint 1.379245e-03

Joint ci ratio: 1.427530e-01	ci left: 1.294888e-03	ci right 1.495708e-03	k: 752	n:540000
Cons ci ratio: 1.370239e-02	ci left: 1.307105e-01	ci right 1.325157e-01	k: 71070	n:540000
KS ci ratio: 1.311427e-01	ci left: 1.543504e-03	ci right 1.761898e-03	k: 891	n:540000
SLAMF8   540000 perm   214 sec   (2518 perm/sec)   p_kst 1.650000e-03   p_cons 1.316111e-01   p_joint 1.392593e-03

Joint ci ratio: 1.414441e-01	ci left: 1.295894e-03	ci right 1.494872e-03	k: 766	n:550000
Cons ci ratio: 1.358040e-02	ci left: 1.306659e-01	ci right 1.324543e-01	k: 72357	n:550000
KS ci ratio: 1.301978e-01	ci left: 1.538304e-03	ci right 1.754273e-03	k: 904	n:550000
SLAMF8   550000 perm   221 sec   (2494 perm/sec)   p_kst 1.643636e-03   p_cons 1.315582e-01   p_joint 1.392727e-03

Joint ci ratio: 1.404410e-01	ci left: 1.291703e-03	ci right 1.488513e-03	k: 777	n:560000
Cons ci ratio: 1.345666e-02	ci left: 1.307067e-01	ci right 1.324792e-01	k: 73691	n:560000
KS ci ratio: 1.294852e-01	ci left: 1.528111e-03	ci right 1.741384e-03	k: 914	n:560000
SLAMF8   560000 perm   227 sec   (2471 perm/sec)   p_kst 1.632143e-03   p_cons 1.315911e-01   p_joint 1.387500e-03

Joint ci ratio: 1.385823e-01	ci left: 1.304599e-03	ci right 1.500525e-03	k: 798	n:570000
Cons ci ratio: 1.333277e-02	ci left: 1.308056e-01	ci right 1.325630e-01	k: 75059	n:570000
KS ci ratio: 1.280924e-01	ci left: 1.535260e-03	ci right 1.747050e-03	k: 934	n:570000
SLAMF8   570000 perm   233 sec   (2447 perm/sec)   p_kst 1.638596e-03   p_cons 1.316825e-01   p_joint 1.400000e-03

Joint ci ratio: 1.367954e-01	ci left: 1.317066e-03	ci right 1.512107e-03	k: 819	n:580000
Cons ci ratio: 1.321891e-02	ci left: 1.307860e-01	ci right 1.325280e-01	k: 76360	n:580000
KS ci ratio: 1.268768e-01	ci left: 1.538834e-03	ci right 1.748952e-03	k: 952	n:580000
SLAMF8   580000 perm   240 sec   (2421 perm/sec)   p_kst 1.641379e-03   p_cons 1.316552e-01   p_joint 1.412069e-03

Joint ci ratio: 1.354798e-01	ci left: 1.320938e-03	ci right 1.514519e-03	k: 835	n:590000
Cons ci ratio: 1.310481e-02	ci left: 1.308212e-01	ci right 1.325485e-01	k: 77693	n:590000
KS ci ratio: 1.257600e-01	ci left: 1.540656e-03	ci right 1.749033e-03	k: 969	n:590000
SLAMF8   590000 perm   246 sec   (2400 perm/sec)   p_kst 1.642373e-03   p_cons 1.316831e-01   p_joint 1.415254e-03

Joint ci ratio: 1.346772e-01	ci left: 1.315025e-03	ci right 1.506507e-03	k: 845	n:600000
Cons ci ratio: 1.299475e-02	ci left: 1.308353e-01	ci right 1.325482e-01	k: 79014	n:600000
KS ci ratio: 1.245459e-01	ci left: 1.545654e-03	ci right 1.752539e-03	k: 988	n:600000
SLAMF8   600000 perm   252 sec   (2379 perm/sec)   p_kst 1.646667e-03   p_cons 1.316900e-01   p_joint 1.408333e-03

Joint ci ratio: 1.241084e-01	ci left: 1.531433e-03	ci right 1.735642e-03	k: 995	n:610000
Cons ci ratio: 1.288567e-02	ci left: 1.308801e-01	ci right 1.325791e-01	k: 80354	n:610000
KS ci ratio: 1.234890e-01	ci left: 1.547319e-03	ci right 1.752542e-03	k: 1005	n:610000
SLAMF8   610000 perm   259 sec   (2360 perm/sec)   p_kst 1.647541e-03   p_cons 1.317279e-01   p_joint 1.631148e-03

Joint ci ratio: 9.170066e-02	ci left: 2.803916e-03	ci right 3.074955e-03	k: 1821	n:620000
Cons ci ratio: 1.278388e-02	ci left: 1.308415e-01	ci right 1.325265e-01	k: 81643	n:620000
KS ci ratio: 1.222195e-01	ci left: 1.555193e-03	ci right 1.759186e-03	k: 1026	n:620000
SLAMF8   620000 perm   265 sec   (2335 perm/sec)   p_kst 1.654839e-03   p_cons 1.316823e-01   p_joint 2.937097e-03

Joint ci ratio: 9.602772e-02	ci left: 2.511381e-03	ci right 2.766242e-03	k: 1661	n:630000
Cons ci ratio: 1.267848e-02	ci left: 1.309118e-01	ci right 1.325837e-01	k: 83000	n:630000
KS ci ratio: 1.201869e-01	ci left: 1.584380e-03	ci right 1.788500e-03	k: 1061	n:630000
SLAMF8   630000 perm   272 sec   (2314 perm/sec)   p_kst 1.684127e-03   p_cons 1.317460e-01   p_joint 2.636508e-03

Joint ci ratio: 9.528533e-02	ci left: 2.511794e-03	ci right 2.764616e-03	k: 1687	n:640000
Cons ci ratio: 1.258647e-02	ci left: 1.307836e-01	ci right 1.324416e-01	k: 84231	n:640000
KS ci ratio: 1.191258e-01	ci left: 1.588423e-03	ci right 1.791130e-03	k: 1080	n:640000
SLAMF8   640000 perm   279 sec   (2294 perm/sec)   p_kst 1.687500e-03   p_cons 1.316109e-01   p_joint 2.635937e-03

Joint ci ratio: 1.193487e-01	ci left: 1.558014e-03	ci right 1.757239e-03	k: 1076	n:650000
Cons ci ratio: 1.248996e-02	ci left: 1.307775e-01	ci right 1.324227e-01	k: 85539	n:650000
KS ci ratio: 1.179849e-01	ci left: 1.595336e-03	ci right 1.796839e-03	k: 1101	n:650000
SLAMF8   650000 perm   286 sec   (2274 perm/sec)   p_kst 1.693846e-03   p_cons 1.315985e-01   p_joint 1.655385e-03

Joint ci ratio: 1.183636e-01	ci left: 1.560870e-03	ci right 1.758697e-03	k: 1094	n:660000
Cons ci ratio: 1.239761e-02	ci left: 1.307354e-01	ci right 1.323678e-01	k: 86823	n:660000
KS ci ratio: 1.171377e-01	ci left: 1.594694e-03	ci right 1.794569e-03	k: 1117	n:660000
SLAMF8   660000 perm   293 sec   (2255 perm/sec)   p_kst 1.692424e-03   p_cons 1.315500e-01   p_joint 1.657576e-03

Joint ci ratio: 1.176143e-01	ci left: 1.557852e-03	ci right 1.753960e-03	k: 1108	n:670000
Cons ci ratio: 1.230503e-02	ci left: 1.307363e-01	ci right 1.323564e-01	k: 88135	n:670000
KS ci ratio: 1.163085e-01	ci left: 1.594076e-03	ci right 1.792362e-03	k: 1133	n:670000
SLAMF8   670000 perm   300 sec   (2235 perm/sec)   p_kst 1.691045e-03   p_cons 1.315448e-01   p_joint 1.653731e-03

Joint ci ratio: 1.166194e-01	ci left: 1.562065e-03	ci right 1.756925e-03	k: 1127	n:680000
Cons ci ratio: 1.221700e-02	ci left: 1.306903e-01	ci right 1.322982e-01	k: 89415	n:680000
KS ci ratio: 1.154966e-01	ci left: 1.593481e-03	ci right 1.790215e-03	k: 1149	n:680000
SLAMF8   680000 perm   307 sec   (2216 perm/sec)   p_kst 1.689706e-03   p_cons 1.314926e-01   p_joint 1.657353e-03

Joint ci ratio: 1.156998e-01	ci left: 1.564756e-03	ci right 1.758307e-03	k: 1145	n:690000
Cons ci ratio: 1.212976e-02	ci left: 1.306658e-01	ci right 1.322619e-01	k: 90709	n:690000
KS ci ratio: 1.146523e-01	ci left: 1.594315e-03	ci right 1.789617e-03	k: 1166	n:690000
SLAMF8   690000 perm   314 sec   (2197 perm/sec)   p_kst 1.689855e-03   p_cons 1.314623e-01   p_joint 1.659420e-03

Joint ci ratio: 1.149997e-01	ci left: 1.561825e-03	ci right 1.753765e-03	k: 1159	n:700000
Cons ci ratio: 1.204776e-02	ci left: 1.305780e-01	ci right 1.321622e-01	k: 91958	n:700000
KS ci ratio: 1.139226e-01	ci left: 1.592355e-03	ci right 1.786092e-03	k: 1181	n:700000
SLAMF8   700000 perm   321 sec   (2178 perm/sec)   p_kst 1.687143e-03   p_cons 1.313686e-01   p_joint 1.655714e-03

Joint ci ratio: 1.146550e-01	ci left: 1.549403e-03	ci right 1.739207e-03	k: 1166	n:710000
Cons ci ratio: 1.196362e-02	ci left: 1.305644e-01	ci right 1.321372e-01	k: 93258	n:710000
KS ci ratio: 1.134920e-01	ci left: 1.582243e-03	ci right 1.773972e-03	k: 1190	n:710000
SLAMF8   710000 perm   329 sec   (2160 perm/sec)   p_kst 1.676056e-03   p_cons 1.313493e-01   p_joint 1.642254e-03

Joint ci ratio: 1.139253e-01	ci left: 1.548121e-03	ci right 1.736480e-03	k: 1181	n:720000
Cons ci ratio: 1.187798e-02	ci left: 1.306135e-01	ci right 1.321756e-01	k: 94603	n:720000
KS ci ratio: 1.128779e-01	ci left: 1.577811e-03	ci right 1.767901e-03	k: 1203	n:720000
SLAMF8   720000 perm   336 sec   (2142 perm/sec)   p_kst 1.670833e-03   p_cons 1.313931e-01   p_joint 1.640278e-03

Joint ci ratio: 1.133042e-01	ci left: 1.544216e-03	ci right 1.731007e-03	k: 1194	n:730000
Cons ci ratio: 1.179301e-02	ci left: 1.306832e-01	ci right 1.322348e-01	k: 95964	n:730000
KS ci ratio: 1.122737e-01	ci left: 1.573504e-03	ci right 1.761993e-03	k: 1216	n:730000
SLAMF8   730000 perm   344 sec   (2125 perm/sec)   p_kst 1.665753e-03   p_cons 1.314575e-01   p_joint 1.635616e-03

Joint ci ratio: 1.125067e-01	ci left: 1.545672e-03	ci right 1.731237e-03	k: 1211	n:740000
Cons ci ratio: 1.170984e-02	ci left: 1.307510e-01	ci right 1.322924e-01	k: 97325	n:740000
KS ci ratio: 1.113171e-01	ci left: 1.579826e-03	ci right 1.767353e-03	k: 1237	n:740000
SLAMF8   740000 perm   351 sec   (2105 perm/sec)   p_kst 1.671622e-03   p_cons 1.315203e-01   p_joint 1.636486e-03

Joint ci ratio: 1.120000e-01	ci left: 1.539318e-03	ci right 1.723232e-03	k: 1222	n:750000
Cons ci ratio: 1.163295e-02	ci left: 1.307279e-01	ci right 1.322589e-01	k: 98619	n:750000
KS ci ratio: 1.105165e-01	ci left: 1.582096e-03	ci right 1.768454e-03	k: 1255	n:750000
SLAMF8   750000 perm   360 sec   (2086 perm/sec)   p_kst 1.673333e-03   p_cons 1.314920e-01   p_joint 1.629333e-03

Joint ci ratio: 1.113646e-01	ci left: 1.536970e-03	ci right 1.719494e-03	k: 1236	n:760000
Cons ci ratio: 1.155729e-02	ci left: 1.307108e-01	ci right 1.322315e-01	k: 99917	n:760000
KS ci ratio: 1.099926e-01	ci left: 1.576632e-03	ci right 1.761410e-03	k: 1267	n:760000
SLAMF8   760000 perm   367 sec   (2070 perm/sec)   p_kst 1.667105e-03   p_cons 1.314697e-01   p_joint 1.626316e-03

Joint ci ratio: 1.106513e-01	ci left: 1.537212e-03	ci right 1.718518e-03	k: 1252	n:770000
Cons ci ratio: 1.147904e-02	ci left: 1.307744e-01	ci right 1.322855e-01	k: 101277	n:770000
KS ci ratio: 1.090927e-01	ci left: 1.582682e-03	ci right 1.766554e-03	k: 1288	n:770000
SLAMF8   770000 perm   375 sec   (2054 perm/sec)   p_kst 1.672727e-03   p_cons 1.315286e-01   p_joint 1.625974e-03

Joint ci ratio: 9.497024e-02	ci left: 2.075956e-03	ci right 2.284179e-03	k: 1699	n:780000
Cons ci ratio: 1.140736e-02	ci left: 1.307367e-01	ci right 1.322379e-01	k: 102559	n:780000
KS ci ratio: 1.086305e-01	ci left: 1.576110e-03	ci right 1.758392e-03	k: 1299	n:780000
SLAMF8   780000 perm   383 sec   (2039 perm/sec)   p_kst 1.665385e-03   p_cons 1.314859e-01   p_joint 2.178205e-03

Joint ci ratio: 9.444410e-02	ci left: 2.073159e-03	ci right 2.279886e-03	k: 1718	n:790000
Cons ci ratio: 1.133247e-02	ci left: 1.307909e-01	ci right 1.322827e-01	k: 103913	n:790000
KS ci ratio: 1.080917e-01	ci left: 1.572169e-03	ci right 1.753036e-03	k: 1312	n:790000
SLAMF8   790000 perm   390 sec   (2023 perm/sec)   p_kst 1.660759e-03   p_cons 1.315354e-01   p_joint 2.174684e-03

Joint ci ratio: 1.088427e-01	ci left: 1.530625e-03	ci right 1.708015e-03	k: 1294	n:800000
Cons ci ratio: 1.126181e-02	ci left: 1.307876e-01	ci right 1.322701e-01	k: 105222	n:800000
KS ci ratio: 1.075607e-01	ci left: 1.568328e-03	ci right 1.747811e-03	k: 1325	n:800000
SLAMF8   800000 perm   398 sec   (2008 perm/sec)   p_kst 1.656250e-03   p_cons 1.315275e-01   p_joint 1.617500e-03

Joint ci ratio: 8.602800e-02	ci left: 2.446771e-03	ci right 2.667921e-03	k: 2070	n:810000
Cons ci ratio: 1.119270e-02	ci left: 1.307795e-01	ci right 1.322527e-01	k: 106527	n:810000
KS ci ratio: 1.068778e-01	ci left: 1.569391e-03	ci right 1.747784e-03	k: 1342	n:810000
SLAMF8   810000 perm   406 sec   (1993 perm/sec)   p_kst 1.656790e-03   p_cons 1.315148e-01   p_joint 2.555556e-03

Joint ci ratio: 1.073604e-01	ci left: 1.536009e-03	ci right 1.711445e-03	k: 1330	n:820000
Cons ci ratio: 1.112770e-02	ci left: 1.307133e-01	ci right 1.321771e-01	k: 107784	n:820000
KS ci ratio: 1.060516e-01	ci left: 1.575180e-03	ci right 1.752760e-03	k: 1363	n:820000
SLAMF8   820000 perm   415 sec   (1978 perm/sec)   p_kst 1.662195e-03   p_cons 1.314439e-01   p_joint 1.621951e-03

Joint ci ratio: 1.068003e-01	ci left: 1.533918e-03	ci right 1.708144e-03	k: 1344	n:830000
Cons ci ratio: 1.105815e-02	ci left: 1.307652e-01	ci right 1.322205e-01	k: 109138	n:830000
KS ci ratio: 1.053586e-01	ci left: 1.577315e-03	ci right 1.753902e-03	k: 1381	n:830000
SLAMF8   830000 perm   423 sec   (1963 perm/sec)   p_kst 1.663855e-03   p_cons 1.314916e-01   p_joint 1.619277e-03

Joint ci ratio: 1.057435e-01	ci left: 1.546946e-03	ci right 1.720805e-03	k: 1371	n:840000
Cons ci ratio: 1.099173e-02	ci left: 1.307780e-01	ci right 1.322246e-01	k: 110460	n:840000
KS ci ratio: 1.043065e-01	ci left: 1.590998e-03	ci right 1.767229e-03	k: 1409	n:840000
SLAMF8   840000 perm   431 sec   (1948 perm/sec)   p_kst 1.677381e-03   p_cons 1.315000e-01   p_joint 1.632143e-03

Joint ci ratio: 1.054371e-01	ci left: 1.537910e-03	ci right 1.710221e-03	k: 1379	n:850000
Cons ci ratio: 1.092576e-02	ci left: 1.308057e-01	ci right 1.322439e-01	k: 111795	n:850000
KS ci ratio: 1.039757e-01	ci left: 1.582592e-03	ci right 1.757302e-03	k: 1418	n:850000
SLAMF8   850000 perm   439 sec   (1934 perm/sec)   p_kst 1.668235e-03   p_cons 1.315235e-01   p_joint 1.622353e-03

Joint ci ratio: 1.046810e-01	ci left: 1.542672e-03	ci right 1.714201e-03	k: 1399	n:860000
Cons ci ratio: 1.085985e-02	ci left: 1.308560e-01	ci right 1.322860e-01	k: 113150	n:860000
KS ci ratio: 1.031070e-01	ci left: 1.591375e-03	ci right 1.765498e-03	k: 1442	n:860000
SLAMF8   860000 perm   448 sec   (1920 perm/sec)   p_kst 1.676744e-03   p_cons 1.315698e-01   p_joint 1.626744e-03

Joint ci ratio: 1.040144e-01	ci left: 1.545090e-03	ci right 1.715727e-03	k: 1417	n:870000
Cons ci ratio: 1.079588e-02	ci left: 1.308891e-01	ci right 1.323110e-01	k: 114491	n:870000
KS ci ratio: 1.023996e-01	ci left: 1.595481e-03	ci right 1.768783e-03	k: 1462	n:870000
SLAMF8   870000 perm   456 sec   (1906 perm/sec)   p_kst 1.680460e-03   p_cons 1.315989e-01   p_joint 1.628736e-03

Joint ci ratio: 1.114673e-01	ci left: 1.325166e-03	ci right 1.482691e-03	k: 1234	n:880000
Cons ci ratio: 1.073266e-02	ci left: 1.309295e-01	ci right 1.323434e-01	k: 115839	n:880000
KS ci ratio: 1.017753e-01	ci left: 1.597283e-03	ci right 1.769660e-03	k: 1480	n:880000
SLAMF8   880000 perm   465 sec   (1891 perm/sec)   p_kst 1.681818e-03   p_cons 1.316352e-01   p_joint 1.402273e-03

Joint ci ratio: 1.108408e-01	ci left: 1.325569e-03	ci right 1.482199e-03	k: 1248	n:890000
Cons ci ratio: 1.067012e-02	ci left: 1.309779e-01	ci right 1.323840e-01	k: 117195	n:890000
KS ci ratio: 1.010274e-01	ci left: 1.603428e-03	ci right 1.775122e-03	k: 1502	n:890000
SLAMF8   890000 perm   474 sec   (1878 perm/sec)   p_kst 1.687640e-03   p_cons 1.316798e-01   p_joint 1.402247e-03

Joint ci ratio: 1.024025e-01	ci left: 1.542296e-03	ci right 1.709827e-03	k: 1462	n:900000
Cons ci ratio: 1.060948e-02	ci left: 1.310075e-01	ci right 1.324060e-01	k: 118535	n:900000
KS ci ratio: 1.005272e-01	ci left: 1.601859e-03	ci right 1.772485e-03	k: 1517	n:900000
SLAMF8   900000 perm   483 sec   (1864 perm/sec)   p_kst 1.685556e-03   p_cons 1.317056e-01   p_joint 1.624444e-03

Joint ci ratio: 1.018126e-01	ci left: 1.543552e-03	ci right 1.710195e-03	k: 1479	n:910000
Cons ci ratio: 1.055072e-02	ci left: 1.310179e-01	ci right 1.324086e-01	k: 119858	n:910000
KS ci ratio: 9.993633e-02	ci left: 1.603541e-03	ci right 1.773283e-03	k: 1535	n:910000
SLAMF8   910000 perm   491 sec   (1852 perm/sec)   p_kst 1.686813e-03   p_cons 1.317121e-01   p_joint 1.625275e-03

Joint ci ratio: 1.013006e-01	ci left: 1.542665e-03	ci right 1.708325e-03	k: 1494	n:920000
Cons ci ratio: 1.049393e-02	ci left: 1.310064e-01	ci right 1.323894e-01	k: 121161	n:920000
KS ci ratio: 9.945200e-02	ci left: 1.602009e-03	ci right 1.770719e-03	k: 1550	n:920000
SLAMF8   920000 perm   500 sec   (1839 perm/sec)   p_kst 1.684783e-03   p_cons 1.316967e-01   p_joint 1.623913e-03

Joint ci ratio: 1.005631e-01	ci left: 1.549136e-03	ci right 1.714208e-03	k: 1516	n:930000
Cons ci ratio: 1.043613e-02	ci left: 1.310369e-01	ci right 1.324127e-01	k: 122503	n:930000
KS ci ratio: 9.884828e-02	ci left: 1.604706e-03	ci right 1.772615e-03	k: 1569	n:930000
SLAMF8   930000 perm   509 sec   (1827 perm/sec)   p_kst 1.687097e-03   p_cons 1.317237e-01   p_joint 1.630108e-03

Joint ci ratio: 1.000369e-01	ci left: 1.549250e-03	ci right 1.713420e-03	k: 1532	n:940000
Cons ci ratio: 1.038024e-02	ci left: 1.310456e-01	ci right 1.324141e-01	k: 123825	n:940000
KS ci ratio: 9.834846e-02	ci left: 1.604236e-03	ci right 1.771199e-03	k: 1585	n:940000
SLAMF8   940000 perm   518 sec   (1814 perm/sec)   p_kst 1.686170e-03   p_cons 1.317287e-01   p_joint 1.629787e-03

Joint ci ratio: 9.977736e-02	ci left: 1.541152e-03	ci right 1.704016e-03	k: 1540	n:950000
Cons ci ratio: 1.032567e-02	ci left: 1.310447e-01	ci right 1.324059e-01	k: 125138	n:950000
KS ci ratio: 9.813265e-02	ci left: 1.594537e-03	ci right 1.760104e-03	k: 1592	n:950000
SLAMF8   950000 perm   527 sec   (1802 perm/sec)   p_kst 1.675789e-03   p_cons 1.317242e-01   p_joint 1.621053e-03

Outputting figure to mutsig2_images.part000000000158/SLAMF8.3_878_950000_0.0016758_0.13172_0.0016211.png
                gene_name: SLAMF8
               theta_stop: 0.100 
                    nperm: 950000 
                     p_ks: 0.0017 
        ci_ks_bounds_left: 0.0016 
       ci_ks_bounds_right: 0.0018 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.0016 
     ci_joint_bounds_left: 0.0015 
    ci_joint_bounds_right: 0.0017 

Current progress: 59 percent done.
SLC10A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.586852e-02	ci left: 4.122941e-01	ci right 4.317514e-01	k: 4220	n:10000
Cons ci ratio: 8.377868e-02	ci left: 1.720224e-01	ci right 1.871647e-01	k: 1795	n:10000
KS ci ratio: 4.076971e-02	ci left: 4.704647e-01	ci right 4.901468e-01	k: 4803	n:10000
SLC10A5   10000 perm   2 sec   (6164 perm/sec)   p_kst 4.803000e-01   p_cons 1.795000e-01   p_joint 4.220000e-01

Outputting figure to mutsig2_images.part000000000158/SLC10A5.3_1321_10000_0.4803_0.1795_0.422.png
                gene_name: SLC10A5
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 61 percent done.
SLC11A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.011016e-02	ci left: 9.327839e-01	ci right 9.423592e-01	k: 9377	n:10000
KS ci ratio: 1.814299e-02	ci left: 8.159855e-01	ci right 8.310256e-01	k: 8236	n:10000
SLC11A1   10000 perm   2 sec   (5843 perm/sec)   p_kst 8.236000e-01   p_cons 9.377000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC11A1.3_1713_10000_0.8236_0.9377_1.png
                gene_name: SLC11A1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
SLC11A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.222363e-02	ci left: 5.870082e-01	ci right 6.063355e-01	k: 5967	n:10000
Cons ci ratio: 3.388375e-02	ci left: 5.625333e-01	ci right 5.820246e-01	k: 5723	n:10000
KS ci ratio: 4.898462e-02	ci left: 3.807221e-01	ci right 3.999419e-01	k: 3903	n:10000
SLC11A2   10000 perm   2 sec   (5775 perm/sec)   p_kst 3.903000e-01   p_cons 5.723000e-01   p_joint 5.967000e-01

Outputting figure to mutsig2_images.part000000000158/SLC11A2.3_1945_10000_0.3903_0.5723_0.5967.png
                gene_name: SLC11A2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 64 percent done.
SLC14A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.342233e-02	ci left: 5.692514e-01	ci right 5.887025e-01	k: 5790	n:10000
Cons ci ratio: 5.785981e-02	ci left: 3.054047e-01	ci right 3.237035e-01	k: 3145	n:10000
KS ci ratio: 2.300583e-02	ci left: 7.351239e-01	ci right 7.523339e-01	k: 7438	n:10000
SLC14A2   10000 perm   2 sec   (5583 perm/sec)   p_kst 7.438000e-01   p_cons 3.145000e-01   p_joint 5.790000e-01

Outputting figure to mutsig2_images.part000000000158/SLC14A2.3_2839_10000_0.7438_0.3145_0.579.png
                gene_name: SLC14A2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 66 percent done.
SLC15A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.615064e-02	ci left: 6.828465e-01	ci right 7.010415e-01	k: 6920	n:10000
Cons ci ratio: 5.291978e-02	ci left: 3.448197e-01	ci right 3.636653e-01	k: 3542	n:10000
KS ci ratio: 1.725614e-02	ci left: 8.303250e-01	ci right 8.448778e-01	k: 8377	n:10000
SLC15A1   10000 perm   2 sec   (5566 perm/sec)   p_kst 8.377000e-01   p_cons 3.542000e-01   p_joint 6.920000e-01

Outputting figure to mutsig2_images.part000000000158/SLC15A1.3_2219_10000_0.8377_0.3542_0.692.png
                gene_name: SLC15A1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 67 percent done.
SLC15A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.967861e-02	ci left: 6.260790e-01	ci right 6.450419e-01	k: 6356	n:10000
KS ci ratio: 2.619358e-02	ci left: 6.821411e-01	ci right 7.003474e-01	k: 6913	n:10000
SLC15A4   10000 perm   2 sec   (5977 perm/sec)   p_kst 6.913000e-01   p_cons 6.356000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC15A4.3_1766_10000_0.6913_0.6356_1.png
                gene_name: SLC15A4
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
SLC16A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
KS ci ratio: 7.677370e-01	ci left: 1.618501e-03	ci right 3.688296e-03	k: 25	n:10000
SLC16A1   10000 perm   2 sec   (6181 perm/sec)   p_kst 2.500000e-03   p_cons 9.400000e-03   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.779027e-01	ci left: 8.481394e-03	ci right 1.126389e-02	k: 196	n:20000
KS ci ratio: 5.651098e-01	ci left: 1.727187e-03	ci right 3.123791e-03	k: 47	n:20000
SLC16A1   20000 perm   4 sec   (5397 perm/sec)   p_kst 2.350000e-03   p_cons 9.800000e-03   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.294711e-01	ci left: 8.527638e-03	ci right 1.076886e-02	k: 288	n:30000
KS ci ratio: 4.679749e-01	ci left: 1.789965e-03	ci right 2.909908e-03	k: 69	n:30000
SLC16A1   30000 perm   6 sec   (5130 perm/sec)   p_kst 2.300000e-03   p_cons 9.600000e-03   p_joint 0

Joint ci ratio: 6.719803e-01	ci left: 5.679580e-04	ci right 1.158413e-03	k: 33	n:40000
Cons ci ratio: 1.993389e-01	ci left: 8.620141e-03	ci right 1.055206e-02	k: 382	n:40000
KS ci ratio: 4.060072e-01	ci left: 1.854515e-03	ci right 2.820011e-03	k: 92	n:40000
SLC16A1   40000 perm   8 sec   (4957 perm/sec)   p_kst 2.300000e-03   p_cons 9.550000e-03   p_joint 8.250000e-04

Joint ci ratio: 6.720391e-01	ci left: 4.543558e-04	ci right 9.267617e-04	k: 33	n:50000
Cons ci ratio: 1.769468e-01	ci left: 8.859481e-03	ci right 1.059815e-02	k: 485	n:50000
KS ci ratio: 3.574122e-01	ci left: 1.972016e-03	ci right 2.847358e-03	k: 119	n:50000
SLC16A1   50000 perm   10 sec   (4830 perm/sec)   p_kst 2.380000e-03   p_cons 9.700000e-03   p_joint 6.600000e-04

Joint ci ratio: 1.012005e+00	ci left: 1.275712e-04	ci right 3.914627e-04	k: 14	n:60000
Cons ci ratio: 1.600401e-01	ci left: 9.107247e-03	ci right 1.070736e-02	k: 593	n:60000
KS ci ratio: 3.309110e-01	ci left: 1.947903e-03	ci right 2.734806e-03	k: 139	n:60000
SLC16A1   60000 perm   13 sec   (4700 perm/sec)   p_kst 2.316667e-03   p_cons 9.883333e-03   p_joint 2.333333e-04

Joint ci ratio: 1.131501e+00	ci left: 7.844767e-05	ci right 2.811545e-04	k: 11	n:70000
Cons ci ratio: 1.487113e-01	ci left: 9.097242e-03	ci right 1.057239e-02	k: 687	n:70000
KS ci ratio: 3.085816e-01	ci left: 1.945582e-03	ci right 2.668094e-03	k: 160	n:70000
SLC16A1   70000 perm   15 sec   (4599 perm/sec)   p_kst 2.285714e-03   p_cons 9.814286e-03   p_joint 1.571429e-04

Joint ci ratio: 3.752097e-01	ci left: 1.107559e-03	ci right 1.629681e-03	k: 108	n:80000
Cons ci ratio: 1.380718e-01	ci left: 9.285868e-03	ci right 1.067501e-02	k: 797	n:80000
KS ci ratio: 2.918488e-01	ci left: 1.922005e-03	ci right 2.589913e-03	k: 179	n:80000
SLC16A1   80000 perm   18 sec   (4439 perm/sec)   p_kst 2.237500e-03   p_cons 9.962500e-03   p_joint 1.350000e-03

Joint ci ratio: 3.653062e-01	ci left: 1.044954e-03	ci right 1.521460e-03	k: 114	n:90000
Cons ci ratio: 1.287879e-01	ci left: 9.532306e-03	ci right 1.085511e-02	k: 916	n:90000
KS ci ratio: 2.761850e-01	ci left: 1.925174e-03	ci right 2.552045e-03	k: 200	n:90000
SLC16A1   90000 perm   21 sec   (4361 perm/sec)   p_kst 2.222222e-03   p_cons 1.017778e-02   p_joint 1.266667e-03

Joint ci ratio: 4.717474e-01	ci left: 5.280841e-04	ci right 8.619835e-04	k: 68	n:100000
Cons ci ratio: 1.222329e-01	ci left: 9.557384e-03	ci right 1.081127e-02	k: 1017	n:100000
KS ci ratio: 2.645975e-01	ci left: 1.900456e-03	ci right 2.489015e-03	k: 218	n:100000
SLC16A1   100000 perm   23 sec   (4295 perm/sec)   p_kst 2.180000e-03   p_cons 1.017000e-02   p_joint 6.800000e-04

Joint ci ratio: 3.220037e-01	ci left: 1.129181e-03	ci right 1.570512e-03	k: 147	n:110000
Cons ci ratio: 8.149562e-02	ci left: 1.975981e-02	ci right 2.144742e-02	k: 2265	n:110000
KS ci ratio: 2.543558e-01	ci left: 1.880682e-03	ci right 2.436998e-03	k: 236	n:110000
SLC16A1   110000 perm   26 sec   (4227 perm/sec)   p_kst 2.145455e-03   p_cons 2.059091e-02   p_joint 1.336364e-03

Joint ci ratio: 3.077750e-01	ci left: 1.142535e-03	ci right 1.565487e-03	k: 161	n:120000
Cons ci ratio: 7.809068e-02	ci left: 1.976291e-02	ci right 2.137705e-02	k: 2467	n:120000
KS ci ratio: 2.433129e-01	ci left: 1.895866e-03	ci right 2.428651e-03	k: 258	n:120000
SLC16A1   120000 perm   29 sec   (4161 perm/sec)   p_kst 2.150000e-03   p_cons 2.055833e-02   p_joint 1.341667e-03

Joint ci ratio: 2.944435e-01	ci left: 1.161322e-03	ci right 1.569135e-03	k: 176	n:130000
Cons ci ratio: 7.493655e-02	ci left: 1.984228e-02	ci right 2.139459e-02	k: 2679	n:130000
KS ci ratio: 2.331784e-01	ci left: 1.916398e-03	ci right 2.429290e-03	k: 281	n:130000
SLC16A1   130000 perm   32 sec   (4098 perm/sec)   p_kst 2.161538e-03   p_cons 2.060769e-02   p_joint 1.353846e-03

Joint ci ratio: 2.987125e-01	ci left: 1.045303e-03	ci right 1.418705e-03	k: 171	n:140000
Cons ci ratio: 7.212339e-02	ci left: 1.991846e-02	ci right 2.141577e-02	k: 2892	n:140000
KS ci ratio: 2.245824e-01	ci left: 1.927649e-03	ci right 2.421903e-03	k: 303	n:140000
SLC16A1   140000 perm   35 sec   (4030 perm/sec)   p_kst 2.164286e-03   p_cons 2.065714e-02   p_joint 1.221429e-03

Joint ci ratio: 2.880254e-01	ci left: 1.055908e-03	ci right 1.417149e-03	k: 184	n:150000
Cons ci ratio: 6.958211e-02	ci left: 1.999853e-02	ci right 2.144675e-02	k: 3107	n:150000
KS ci ratio: 2.158787e-01	ci left: 1.956619e-03	ci right 2.436282e-03	k: 328	n:150000
SLC16A1   150000 perm   38 sec   (3970 perm/sec)   p_kst 2.186667e-03   p_cons 2.071333e-02   p_joint 1.226667e-03

Joint ci ratio: 2.953176e-01	ci left: 9.377694e-04	ci right 1.268237e-03	k: 175	n:160000
Cons ci ratio: 6.732285e-02	ci left: 2.005096e-02	ci right 2.145398e-02	k: 3319	n:160000
KS ci ratio: 2.087061e-01	ci left: 1.970441e-03	ci right 2.435393e-03	k: 351	n:160000
SLC16A1   160000 perm   41 sec   (3910 perm/sec)   p_kst 2.193750e-03   p_cons 2.074375e-02   p_joint 1.093750e-03

Joint ci ratio: 2.677962e-01	ci left: 1.090402e-03	ci right 1.432853e-03	k: 213	n:170000
Cons ci ratio: 6.521373e-02	ci left: 2.013262e-02	ci right 2.149555e-02	k: 3537	n:170000
KS ci ratio: 1.990373e-01	ci left: 2.049918e-03	ci right 2.508497e-03	k: 386	n:170000
SLC16A1   170000 perm   44 sec   (3856 perm/sec)   p_kst 2.270588e-03   p_cons 2.080588e-02   p_joint 1.252941e-03

Joint ci ratio: 2.970299e-01	ci left: 8.232796e-04	ci right 1.115400e-03	k: 173	n:180000
Cons ci ratio: 6.342927e-02	ci left: 2.011831e-02	ci right 2.144163e-02	k: 3739	n:180000
KS ci ratio: 2.108428e-01	ci left: 1.714632e-03	ci right 2.123898e-03	k: 344	n:180000
SLC16A1   180000 perm   47 sec   (3806 perm/sec)   p_kst 1.911111e-03   p_cons 2.077222e-02   p_joint 9.611111e-04

Joint ci ratio: 2.857532e-01	ci left: 8.482515e-04	ci right 1.135745e-03	k: 187	n:190000
Cons ci ratio: 6.184784e-02	ci left: 2.006449e-02	ci right 2.135019e-02	k: 3933	n:190000
KS ci ratio: 2.066936e-01	ci left: 1.694219e-03	ci right 2.089648e-03	k: 358	n:190000
SLC16A1   190000 perm   51 sec   (3758 perm/sec)   p_kst 1.884211e-03   p_cons 2.070000e-02   p_joint 9.842105e-04

Joint ci ratio: 2.784436e-01	ci left: 8.523027e-04	ci right 1.132485e-03	k: 197	n:200000
Cons ci ratio: 6.027478e-02	ci left: 2.008539e-02	ci right 2.133855e-02	k: 4141	n:200000
KS ci ratio: 2.014319e-01	ci left: 1.699654e-03	ci right 2.085012e-03	k: 377	n:200000
SLC16A1   200000 perm   54 sec   (3698 perm/sec)   p_kst 1.885000e-03   p_cons 2.070500e-02   p_joint 9.850000e-04

Joint ci ratio: 2.641472e-01	ci left: 9.093616e-04	ci right 1.190418e-03	k: 219	n:210000
Cons ci ratio: 5.899625e-02	ci left: 1.998266e-02	ci right 2.120206e-02	k: 4323	n:210000
KS ci ratio: 1.958128e-01	ci left: 1.718273e-03	ci right 2.095688e-03	k: 399	n:210000
SLC16A1   210000 perm   58 sec   (3645 perm/sec)   p_kst 1.900000e-03   p_cons 2.058571e-02   p_joint 1.042857e-03

Joint ci ratio: 2.477811e-01	ci left: 9.956567e-04	ci right 1.281385e-03	k: 249	n:220000
Cons ci ratio: 5.766522e-02	ci left: 1.997914e-02	ci right 2.116990e-02	k: 4525	n:220000
KS ci ratio: 1.904132e-01	ci left: 1.739663e-03	ci right 2.110021e-03	k: 422	n:220000
SLC16A1   220000 perm   61 sec   (3593 perm/sec)   p_kst 1.918182e-03   p_cons 2.056818e-02   p_joint 1.131818e-03

Joint ci ratio: 2.028048e-01	ci left: 1.457303e-03	ci right 1.790242e-03	k: 372	n:230000
Cons ci ratio: 5.623850e-02	ci left: 2.010485e-02	ci right 2.127249e-02	k: 4757	n:230000
KS ci ratio: 1.875555e-01	ci left: 1.717871e-03	ci right 2.077476e-03	k: 435	n:230000
SLC16A1   230000 perm   65 sec   (3542 perm/sec)   p_kst 1.891304e-03   p_cons 2.068261e-02   p_joint 1.617391e-03

Joint ci ratio: 1.991037e-01	ci left: 1.451980e-03	ci right 1.776914e-03	k: 386	n:240000
Cons ci ratio: 5.500278e-02	ci left: 2.015464e-02	ci right 2.129864e-02	k: 4973	n:240000
KS ci ratio: 1.844117e-01	ci left: 1.705882e-03	ci right 2.056322e-03	k: 450	n:240000
SLC16A1   240000 perm   69 sec   (3493 perm/sec)   p_kst 1.875000e-03   p_cons 2.072083e-02   p_joint 1.608333e-03

Joint ci ratio: 1.666616e-01	ci left: 2.023968e-03	ci right 2.395724e-03	k: 551	n:250000
Cons ci ratio: 5.394069e-02	ci left: 2.012966e-02	ci right 2.124949e-02	k: 5171	n:250000
KS ci ratio: 1.804535e-01	ci left: 1.713995e-03	ci right 2.057718e-03	k: 470	n:250000
SLC16A1   250000 perm   73 sec   (3446 perm/sec)   p_kst 1.880000e-03   p_cons 2.068400e-02   p_joint 2.204000e-03

Joint ci ratio: 1.640103e-01	ci left: 2.012488e-03	ci right 2.375675e-03	k: 569	n:260000
Cons ci ratio: 5.289762e-02	ci left: 2.013717e-02	ci right 2.123509e-02	k: 5377	n:260000
KS ci ratio: 1.772831e-01	ci left: 1.710529e-03	ci right 2.046884e-03	k: 487	n:260000
SLC16A1   260000 perm   76 sec   (3400 perm/sec)   p_kst 1.873077e-03   p_cons 2.068077e-02   p_joint 2.188462e-03

Joint ci ratio: 1.609340e-01	ci left: 2.016120e-03	ci right 2.372478e-03	k: 591	n:270000
Cons ci ratio: 5.187488e-02	ci left: 2.017357e-02	ci right 2.125157e-02	k: 5591	n:270000
KS ci ratio: 1.735868e-01	ci left: 1.721539e-03	ci right 2.052262e-03	k: 508	n:270000
SLC16A1   270000 perm   81 sec   (3353 perm/sec)   p_kst 1.881481e-03   p_cons 2.070741e-02   p_joint 2.188889e-03

Joint ci ratio: 1.578957e-01	ci left: 2.022983e-03	ci right 2.373163e-03	k: 614	n:280000
Cons ci ratio: 5.088242e-02	ci left: 2.022872e-02	ci right 2.128838e-02	k: 5811	n:280000
KS ci ratio: 1.704349e-01	ci left: 1.724992e-03	ci right 2.049743e-03	k: 527	n:280000
SLC16A1   280000 perm   85 sec   (3306 perm/sec)   p_kst 1.882143e-03   p_cons 2.075357e-02   p_joint 2.192857e-03

Joint ci ratio: 1.556356e-01	ci left: 2.012858e-03	ci right 2.355833e-03	k: 632	n:290000
Cons ci ratio: 4.995750e-02	ci left: 2.027003e-02	ci right 2.131199e-02	k: 6028	n:290000
KS ci ratio: 1.685325e-01	ci left: 1.705132e-03	ci right 2.022197e-03	k: 539	n:290000
SLC16A1   290000 perm   89 sec   (3261 perm/sec)   p_kst 1.858621e-03   p_cons 2.078621e-02   p_joint 2.179310e-03

Joint ci ratio: 1.533519e-01	ci left: 2.006647e-03	ci right 2.343086e-03	k: 651	n:300000
Cons ci ratio: 4.919398e-02	ci left: 2.021654e-02	ci right 2.123942e-02	k: 6217	n:300000
KS ci ratio: 1.659412e-01	ci left: 1.702589e-03	ci right 2.013827e-03	k: 556	n:300000
SLC16A1   300000 perm   93 sec   (3220 perm/sec)   p_kst 1.853333e-03   p_cons 2.072333e-02   p_joint 2.170000e-03

Joint ci ratio: 1.562663e-01	ci left: 1.867485e-03	ci right 2.187100e-03	k: 627	n:310000
Cons ci ratio: 4.836432e-02	ci left: 2.024949e-02	ci right 2.125628e-02	k: 6432	n:310000
KS ci ratio: 1.630395e-01	ci left: 1.709528e-03	ci right 2.016034e-03	k: 576	n:310000
SLC16A1   310000 perm   97 sec   (3185 perm/sec)   p_kst 1.858065e-03   p_cons 2.074839e-02   p_joint 2.022581e-03

Joint ci ratio: 1.533623e-01	ci left: 1.881222e-03	ci right 2.196655e-03	k: 651	n:320000
Cons ci ratio: 4.757891e-02	ci left: 2.027742e-02	ci right 2.126878e-02	k: 6646	n:320000
KS ci ratio: 1.598830e-01	ci left: 1.725077e-03	ci right 2.027808e-03	k: 599	n:320000
SLC16A1   320000 perm   102 sec   (3149 perm/sec)   p_kst 1.871875e-03   p_cons 2.076875e-02   p_joint 2.034375e-03

Joint ci ratio: 1.519721e-01	ci left: 1.859188e-03	ci right 2.167843e-03	k: 663	n:330000
Cons ci ratio: 4.683406e-02	ci left: 2.030080e-02	ci right 2.127734e-02	k: 6859	n:330000
KS ci ratio: 1.585692e-01	ci left: 1.701896e-03	ci right 1.997871e-03	k: 609	n:330000
SLC16A1   330000 perm   106 sec   (3112 perm/sec)   p_kst 1.845455e-03   p_cons 2.078485e-02   p_joint 2.009091e-03

Joint ci ratio: 1.444348e-01	ci left: 2.005602e-03	ci right 2.320627e-03	k: 734	n:340000
Cons ci ratio: 4.614978e-02	ci left: 2.029965e-02	ci right 2.126149e-02	k: 7064	n:340000
KS ci ratio: 1.557840e-01	ci left: 1.714002e-03	ci right 2.006357e-03	k: 631	n:340000
SLC16A1   340000 perm   110 sec   (3077 perm/sec)   p_kst 1.855882e-03   p_cons 2.077647e-02   p_joint 2.158824e-03

Joint ci ratio: 1.423205e-01	ci left: 2.008901e-03	ci right 2.319433e-03	k: 756	n:350000
Cons ci ratio: 4.551063e-02	ci left: 2.028453e-02	ci right 2.123200e-02	k: 7264	n:350000
KS ci ratio: 1.534937e-01	ci left: 1.717216e-03	ci right 2.005417e-03	k: 650	n:350000
SLC16A1   350000 perm   115 sec   (3042 perm/sec)   p_kst 1.857143e-03   p_cons 2.075429e-02   p_joint 2.160000e-03

Joint ci ratio: 1.403867e-01	ci left: 2.009369e-03	ci right 2.315400e-03	k: 777	n:360000
Cons ci ratio: 4.483297e-02	ci left: 2.032804e-02	ci right 2.126303e-02	k: 7485	n:360000
KS ci ratio: 1.513016e-01	ci left: 1.720281e-03	ci right 2.004500e-03	k: 669	n:360000
SLC16A1   360000 perm   120 sec   (3005 perm/sec)   p_kst 1.858333e-03   p_cons 2.079167e-02   p_joint 2.158333e-03

Joint ci ratio: 1.385296e-01	ci left: 2.009838e-03	ci right 2.311557e-03	k: 798	n:370000
Cons ci ratio: 4.421987e-02	ci left: 2.033721e-02	ci right 2.125951e-02	k: 7694	n:370000
KS ci ratio: 1.494182e-01	ci left: 1.718004e-03	ci right 1.997998e-03	k: 686	n:370000
SLC16A1   370000 perm   125 sec   (2970 perm/sec)   p_kst 1.854054e-03   p_cons 2.079459e-02   p_joint 2.156757e-03

Joint ci ratio: 1.521071e-01	ci left: 1.612011e-03	ci right 1.879889e-03	k: 662	n:380000
Cons ci ratio: 4.358623e-02	ci left: 2.038764e-02	ci right 2.129864e-02	k: 7919	n:380000
KS ci ratio: 1.471851e-01	ci left: 1.726006e-03	ci right 2.002731e-03	k: 707	n:380000
SLC16A1   380000 perm   130 sec   (2926 perm/sec)   p_kst 1.860526e-03   p_cons 2.083947e-02   p_joint 1.742105e-03

Joint ci ratio: 1.505268e-01	ci left: 1.605215e-03	ci right 1.868943e-03	k: 676	n:390000
Cons ci ratio: 4.298176e-02	ci left: 2.043303e-02	ci right 2.133308e-02	k: 8143	n:390000
KS ci ratio: 1.457520e-01	ci left: 1.716331e-03	ci right 1.988592e-03	k: 721	n:390000
SLC16A1   390000 perm   135 sec   (2893 perm/sec)   p_kst 1.848718e-03   p_cons 2.087949e-02   p_joint 1.733333e-03

Joint ci ratio: 1.523441e-01	ci left: 1.526596e-03	ci right 1.780711e-03	k: 660	n:400000
Cons ci ratio: 4.238882e-02	ci left: 2.048860e-02	ci right 2.137835e-02	k: 8372	n:400000
KS ci ratio: 1.433873e-01	ci left: 1.731253e-03	ci right 2.001044e-03	k: 745	n:400000
SLC16A1   400000 perm   140 sec   (2860 perm/sec)   p_kst 1.862500e-03   p_cons 2.093000e-02   p_joint 1.650000e-03

Joint ci ratio: 1.499795e-01	ci left: 1.538645e-03	ci right 1.790433e-03	k: 681	n:410000
Cons ci ratio: 4.185207e-02	ci left: 2.051017e-02	ci right 2.138930e-02	k: 8588	n:410000
KS ci ratio: 1.414104e-01	ci left: 1.738423e-03	ci right 2.005281e-03	k: 766	n:410000
SLC16A1   410000 perm   145 sec   (2828 perm/sec)   p_kst 1.868293e-03   p_cons 2.094634e-02   p_joint 1.660976e-03

Joint ci ratio: 1.482507e-01	ci left: 1.538684e-03	ci right 1.787319e-03	k: 697	n:420000
Cons ci ratio: 4.139287e-02	ci left: 2.047421e-02	ci right 2.134194e-02	k: 8780	n:420000
KS ci ratio: 1.399586e-01	ci left: 1.733786e-03	ci right 1.996972e-03	k: 782	n:420000
SLC16A1   420000 perm   150 sec   (2797 perm/sec)   p_kst 1.861905e-03   p_cons 2.090476e-02   p_joint 1.659524e-03

Joint ci ratio: 1.468897e-01	ci left: 1.532017e-03	ci right 1.777102e-03	k: 710	n:430000
Cons ci ratio: 4.086944e-02	ci left: 2.051825e-02	ci right 2.137660e-02	k: 9006	n:430000
KS ci ratio: 1.388119e-01	ci left: 1.722643e-03	ci right 1.981818e-03	k: 795	n:430000
SLC16A1   430000 perm   155 sec   (2767 perm/sec)   p_kst 1.848837e-03   p_cons 2.094419e-02   p_joint 1.651163e-03

Joint ci ratio: 1.465831e-01	ci left: 1.503764e-03	ci right 1.743784e-03	k: 713	n:440000
Cons ci ratio: 4.042131e-02	ci left: 2.050410e-02	ci right 2.135223e-02	k: 9207	n:440000
KS ci ratio: 1.371842e-01	ci left: 1.725183e-03	ci right 1.981448e-03	k: 814	n:440000
SLC16A1   440000 perm   161 sec   (2737 perm/sec)   p_kst 1.850000e-03   p_cons 2.092500e-02   p_joint 1.620455e-03

Joint ci ratio: 1.453673e-01	ci left: 1.496040e-03	ci right 1.732674e-03	k: 725	n:450000
Cons ci ratio: 3.997242e-02	ci left: 2.050603e-02	ci right 2.134460e-02	k: 9415	n:450000
KS ci ratio: 1.361039e-01	ci left: 1.714746e-03	ci right 1.967293e-03	k: 827	n:450000
SLC16A1   450000 perm   166 sec   (2707 perm/sec)   p_kst 1.837778e-03   p_cons 2.092222e-02   p_joint 1.611111e-03

Joint ci ratio: 1.435977e-01	ci left: 1.501233e-03	ci right 1.735551e-03	k: 743	n:460000
Cons ci ratio: 3.950882e-02	ci left: 2.053806e-02	ci right 2.136799e-02	k: 9637	n:460000
KS ci ratio: 1.346482e-01	ci left: 1.715274e-03	ci right 1.964980e-03	k: 845	n:460000
SLC16A1   460000 perm   172 sec   (2679 perm/sec)   p_kst 1.836957e-03   p_cons 2.095000e-02   p_joint 1.615217e-03

Joint ci ratio: 1.425486e-01	ci left: 1.491858e-03	ci right 1.722866e-03	k: 754	n:470000
Cons ci ratio: 3.916253e-02	ci left: 2.046342e-02	ci right 2.128292e-02	k: 9809	n:470000
KS ci ratio: 1.326246e-01	ci left: 1.732250e-03	ci right 1.980338e-03	k: 871	n:470000
SLC16A1   470000 perm   177 sec   (2654 perm/sec)   p_kst 1.853191e-03   p_cons 2.087021e-02   p_joint 1.604255e-03

Joint ci ratio: 1.657016e-01	ci left: 1.068083e-03	ci right 1.263019e-03	k: 558	n:480000
Cons ci ratio: 3.875782e-02	ci left: 2.046209e-02	ci right 2.127288e-02	k: 10015	n:480000
KS ci ratio: 1.311292e-01	ci left: 1.736454e-03	ci right 1.982122e-03	k: 891	n:480000
SLC16A1   480000 perm   183 sec   (2621 perm/sec)   p_kst 1.856250e-03   p_cons 2.086458e-02   p_joint 1.162500e-03

Joint ci ratio: 1.638076e-01	ci left: 1.071722e-03	ci right 1.264866e-03	k: 571	n:490000
Cons ci ratio: 3.837883e-02	ci left: 2.044670e-02	ci right 2.124878e-02	k: 10214	n:490000
KS ci ratio: 1.293285e-01	ci left: 1.750375e-03	ci right 1.994351e-03	k: 916	n:490000
SLC16A1   490000 perm   189 sec   (2598 perm/sec)   p_kst 1.869388e-03   p_cons 2.084490e-02   p_joint 1.165306e-03

Joint ci ratio: 1.625343e-01	ci left: 1.067552e-03	ci right 1.258304e-03	k: 580	n:500000
Cons ci ratio: 3.804060e-02	ci left: 2.040026e-02	ci right 2.119331e-02	k: 10397	n:500000
KS ci ratio: 1.283530e-01	ci left: 1.742464e-03	ci right 1.983366e-03	k: 930	n:500000
SLC16A1   500000 perm   194 sec   (2575 perm/sec)   p_kst 1.860000e-03   p_cons 2.079400e-02   p_joint 1.160000e-03

Joint ci ratio: 1.602066e-01	ci left: 1.078608e-03	ci right 1.268309e-03	k: 597	n:510000
Cons ci ratio: 3.769660e-02	ci left: 2.037121e-02	ci right 2.115582e-02	k: 10588	n:510000
KS ci ratio: 1.265303e-01	ci left: 1.759553e-03	ci right 1.999104e-03	k: 957	n:510000
SLC16A1   510000 perm   200 sec   (2554 perm/sec)   p_kst 1.876471e-03   p_cons 2.076078e-02   p_joint 1.170588e-03

Joint ci ratio: 1.588839e-01	ci left: 1.076328e-03	ci right 1.263916e-03	k: 607	n:520000
Cons ci ratio: 3.732465e-02	ci left: 2.038333e-02	ci right 2.116049e-02	k: 10800	n:520000
KS ci ratio: 1.256164e-01	ci left: 1.751789e-03	ci right 1.988432e-03	k: 971	n:520000
SLC16A1   520000 perm   205 sec   (2532 perm/sec)   p_kst 1.867308e-03   p_cons 2.076923e-02   p_joint 1.167308e-03

Joint ci ratio: 1.569590e-01	ci left: 1.083204e-03	ci right 1.269488e-03	k: 622	n:530000
Cons ci ratio: 3.700470e-02	ci left: 2.035015e-02	ci right 2.111925e-02	k: 10988	n:530000
KS ci ratio: 1.237822e-01	ci left: 1.771748e-03	ci right 2.007336e-03	k: 1000	n:530000
SLC16A1   530000 perm   211 sec   (2510 perm/sec)   p_kst 1.886792e-03   p_cons 2.073208e-02   p_joint 1.173585e-03

Joint ci ratio: 1.591496e-01	ci left: 1.032906e-03	ci right 1.213256e-03	k: 605	n:540000
Cons ci ratio: 3.667107e-02	ci left: 2.034209e-02	ci right 2.110381e-02	k: 11189	n:540000
KS ci ratio: 1.227445e-01	ci left: 1.769448e-03	ci right 2.002615e-03	k: 1017	n:540000
SLC16A1   540000 perm   217 sec   (2490 perm/sec)   p_kst 1.883333e-03   p_cons 2.072037e-02   p_joint 1.120370e-03

Joint ci ratio: 1.578527e-01	ci left: 1.031586e-03	ci right 1.210099e-03	k: 615	n:550000
Cons ci ratio: 3.633327e-02	ci left: 2.034876e-02	ci right 2.110357e-02	k: 11398	n:550000
KS ci ratio: 1.215561e-01	ci left: 1.772529e-03	ci right 2.003678e-03	k: 1037	n:550000
SLC16A1   550000 perm   223 sec   (2468 perm/sec)   p_kst 1.885455e-03   p_cons 2.072364e-02   p_joint 1.118182e-03

Joint ci ratio: 1.558411e-01	ci left: 1.040616e-03	ci right 1.218182e-03	k: 631	n:560000
Cons ci ratio: 3.600306e-02	ci left: 2.035700e-02	ci right 2.110511e-02	k: 11608	n:560000
KS ci ratio: 1.199481e-01	ci left: 1.789367e-03	ci right 2.019406e-03	k: 1065	n:560000
SLC16A1   560000 perm   229 sec   (2447 perm/sec)   p_kst 1.901786e-03   p_cons 2.072857e-02   p_joint 1.126786e-03

Joint ci ratio: 1.545024e-01	ci left: 1.040908e-03	ci right 1.216857e-03	k: 642	n:570000
Cons ci ratio: 3.569094e-02	ci left: 2.035455e-02	ci right 2.109595e-02	k: 11812	n:570000
KS ci ratio: 1.190032e-01	ci left: 1.786908e-03	ci right 2.014693e-03	k: 1082	n:570000
SLC16A1   570000 perm   235 sec   (2426 perm/sec)   p_kst 1.898246e-03   p_cons 2.072281e-02   p_joint 1.126316e-03

Joint ci ratio: 1.535505e-01	ci left: 1.036223e-03	ci right 1.210201e-03	k: 650	n:580000
Cons ci ratio: 3.537178e-02	ci left: 2.036930e-02	ci right 2.110446e-02	k: 12026	n:580000
KS ci ratio: 1.179192e-01	ci left: 1.789560e-03	ci right 2.015461e-03	k: 1102	n:580000
SLC16A1   580000 perm   241 sec   (2403 perm/sec)   p_kst 1.900000e-03   p_cons 2.073448e-02   p_joint 1.120690e-03

Joint ci ratio: 1.518110e-01	ci left: 1.043112e-03	ci right 1.216083e-03	k: 665	n:590000
Cons ci ratio: 3.506103e-02	ci left: 2.038358e-02	ci right 2.111266e-02	k: 12240	n:590000
KS ci ratio: 1.163980e-01	ci left: 1.806942e-03	ci right 2.031892e-03	k: 1131	n:590000
SLC16A1   590000 perm   248 sec   (2380 perm/sec)   p_kst 1.916949e-03   p_cons 2.074576e-02   p_joint 1.127119e-03

Joint ci ratio: 1.502398e-01	ci left: 1.048179e-03	ci right 1.220029e-03	k: 679	n:600000
Cons ci ratio: 3.476830e-02	ci left: 2.038584e-02	ci right 2.110880e-02	k: 12447	n:600000
KS ci ratio: 1.155843e-01	ci left: 1.802719e-03	ci right 2.025468e-03	k: 1147	n:600000
SLC16A1   600000 perm   254 sec   (2360 perm/sec)   p_kst 1.911667e-03   p_cons 2.074500e-02   p_joint 1.131667e-03

Joint ci ratio: 1.489314e-01	ci left: 1.049932e-03	ci right 1.220437e-03	k: 691	n:610000
Cons ci ratio: 3.449810e-02	ci left: 2.037017e-02	ci right 2.108685e-02	k: 12643	n:610000
KS ci ratio: 1.147381e-01	ci left: 1.800232e-03	ci right 2.020935e-03	k: 1164	n:610000
SLC16A1   610000 perm   261 sec   (2339 perm/sec)   p_kst 1.908197e-03   p_cons 2.072623e-02   p_joint 1.132787e-03

Joint ci ratio: 1.479725e-01	ci left: 1.046974e-03	ci right 1.215807e-03	k: 700	n:620000
Cons ci ratio: 3.424364e-02	ci left: 2.034383e-02	ci right 2.105420e-02	k: 12832	n:620000
KS ci ratio: 1.139102e-01	ci left: 1.797831e-03	ci right 2.016542e-03	k: 1181	n:620000
SLC16A1   620000 perm   267 sec   (2320 perm/sec)   p_kst 1.904839e-03   p_cons 2.069677e-02   p_joint 1.129032e-03

Joint ci ratio: 1.488264e-01	ci left: 1.018127e-03	ci right 1.183341e-03	k: 692	n:630000
Cons ci ratio: 3.398672e-02	ci left: 2.032780e-02	ci right 2.103218e-02	k: 13027	n:630000
KS ci ratio: 1.127706e-01	ci left: 1.806310e-03	ci right 2.023708e-03	k: 1205	n:630000
SLC16A1   630000 perm   274 sec   (2301 perm/sec)   p_kst 1.912698e-03   p_cons 2.067778e-02   p_joint 1.098413e-03

Joint ci ratio: 1.253161e-01	ci left: 1.430881e-03	ci right 1.623676e-03	k: 976	n:640000
Cons ci ratio: 3.371209e-02	ci left: 2.034017e-02	ci right 2.103918e-02	k: 13240	n:640000
KS ci ratio: 1.121682e-01	ci left: 1.797827e-03	ci right 2.012972e-03	k: 1218	n:640000
SLC16A1   640000 perm   280 sec   (2283 perm/sec)   p_kst 1.903125e-03   p_cons 2.068750e-02   p_joint 1.525000e-03

Joint ci ratio: 1.418301e-01	ci left: 1.090582e-03	ci right 1.258530e-03	k: 762	n:650000
Cons ci ratio: 3.344273e-02	ci left: 2.035372e-02	ci right 2.104749e-02	k: 13454	n:650000
KS ci ratio: 1.115300e-01	ci left: 1.791104e-03	ci right 2.004144e-03	k: 1232	n:650000
SLC16A1   650000 perm   287 sec   (2264 perm/sec)   p_kst 1.895385e-03   p_cons 2.069846e-02   p_joint 1.172308e-03

Joint ci ratio: 1.403656e-01	ci left: 1.097445e-03	ci right 1.264559e-03	k: 778	n:660000
Cons ci ratio: 3.316859e-02	ci left: 2.038040e-02	ci right 2.106927e-02	k: 13677	n:660000
KS ci ratio: 1.105479e-01	ci left: 1.796374e-03	ci right 2.008037e-03	k: 1254	n:660000
SLC16A1   660000 perm   294 sec   (2246 perm/sec)   p_kst 1.900000e-03   p_cons 2.072273e-02   p_joint 1.178788e-03

Joint ci ratio: 1.415543e-01	ci left: 1.062345e-03	ci right 1.225600e-03	k: 765	n:670000
Cons ci ratio: 3.291800e-02	ci left: 2.038557e-02	ci right 2.106932e-02	k: 13886	n:670000
KS ci ratio: 1.095483e-01	ci left: 1.802946e-03	ci right 2.013338e-03	k: 1277	n:670000
SLC16A1   670000 perm   301 sec   (2227 perm/sec)   p_kst 1.905970e-03   p_cons 2.072537e-02   p_joint 1.141791e-03

Joint ci ratio: 1.215781e-01	ci left: 1.433648e-03	ci right 1.620640e-03	k: 1037	n:680000
Cons ci ratio: 3.265764e-02	ci left: 2.040958e-02	ci right 2.108862e-02	k: 14108	n:680000
KS ci ratio: 1.087850e-01	ci left: 1.802180e-03	ci right 2.010924e-03	k: 1295	n:680000
SLC16A1   680000 perm   308 sec   (2208 perm/sec)   p_kst 1.904412e-03   p_cons 2.074706e-02   p_joint 1.525000e-03

Joint ci ratio: 1.207091e-01	ci left: 1.433951e-03	ci right 1.619550e-03	k: 1052	n:690000
Cons ci ratio: 3.241144e-02	ci left: 2.042286e-02	ci right 2.109712e-02	k: 14323	n:690000
KS ci ratio: 1.080374e-01	ci left: 1.801441e-03	ci right 2.008574e-03	k: 1313	n:690000
SLC16A1   690000 perm   315 sec   (2192 perm/sec)   p_kst 1.902899e-03   p_cons 2.075797e-02   p_joint 1.524638e-03

Joint ci ratio: 1.197462e-01	ci left: 1.437021e-03	ci right 1.621429e-03	k: 1069	n:700000
Cons ci ratio: 3.219108e-02	ci left: 2.041025e-02	ci right 2.107943e-02	k: 14520	n:700000
KS ci ratio: 1.071440e-01	ci left: 1.806289e-03	ci right 2.012154e-03	k: 1335	n:700000
SLC16A1   700000 perm   322 sec   (2175 perm/sec)   p_kst 1.907143e-03   p_cons 2.074286e-02   p_joint 1.527143e-03

Joint ci ratio: 1.016517e-01	ci left: 1.983869e-03	ci right 2.197691e-03	k: 1483	n:710000
Cons ci ratio: 3.194635e-02	ci left: 2.043436e-02	ci right 2.109914e-02	k: 14743	n:710000
KS ci ratio: 1.065083e-01	ci left: 1.802781e-03	ci right 2.006951e-03	k: 1351	n:710000
SLC16A1   710000 perm   329 sec   (2159 perm/sec)   p_kst 1.902817e-03   p_cons 2.076479e-02   p_joint 2.088732e-03

Joint ci ratio: 1.033416e-01	ci left: 1.891353e-03	ci right 2.098798e-03	k: 1435	n:720000
Cons ci ratio: 3.172228e-02	ci left: 2.043851e-02	ci right 2.109868e-02	k: 14952	n:720000
KS ci ratio: 1.053834e-01	ci left: 1.816954e-03	ci right 2.020420e-03	k: 1380	n:720000
SLC16A1   720000 perm   336 sec   (2142 perm/sec)   p_kst 1.916667e-03   p_cons 2.076667e-02   p_joint 1.993056e-03

Joint ci ratio: 1.027000e-01	ci left: 1.889466e-03	ci right 2.095340e-03	k: 1453	n:730000
Cons ci ratio: 3.151028e-02	ci left: 2.043306e-02	ci right 2.108856e-02	k: 15154	n:730000
KS ci ratio: 1.047408e-01	ci left: 1.814740e-03	ci right 2.016643e-03	k: 1397	n:730000
SLC16A1   730000 perm   343 sec   (2125 perm/sec)   p_kst 1.913699e-03   p_cons 2.075890e-02   p_joint 1.990411e-03

Joint ci ratio: 1.020356e-01	ci left: 1.888951e-03	ci right 2.093358e-03	k: 1472	n:740000
Cons ci ratio: 3.131706e-02	ci left: 2.040899e-02	ci right 2.105963e-02	k: 15342	n:740000
KS ci ratio: 1.040730e-01	ci left: 1.813905e-03	ci right 2.014350e-03	k: 1415	n:740000
SLC16A1   740000 perm   351 sec   (2106 perm/sec)   p_kst 1.912162e-03   p_cons 2.073243e-02   p_joint 1.989189e-03

Joint ci ratio: 1.012819e-01	ci left: 1.892352e-03	ci right 2.095525e-03	k: 1494	n:750000
Cons ci ratio: 3.109874e-02	ci left: 2.042262e-02	ci right 2.106908e-02	k: 15558	n:750000
KS ci ratio: 1.033097e-01	ci left: 1.816994e-03	ci right 2.016218e-03	k: 1436	n:750000
SLC16A1   750000 perm   359 sec   (2090 perm/sec)   p_kst 1.914667e-03   p_cons 2.074400e-02   p_joint 1.992000e-03

Joint ci ratio: 1.006445e-01	ci left: 1.891822e-03	ci right 2.093583e-03	k: 1513	n:760000
Cons ci ratio: 3.089192e-02	ci left: 2.042677e-02	ci right 2.106899e-02	k: 15767	n:760000
KS ci ratio: 1.027041e-01	ci left: 1.814878e-03	ci right 2.012634e-03	k: 1453	n:760000
SLC16A1   760000 perm   367 sec   (2073 perm/sec)   p_kst 1.911842e-03   p_cons 2.074605e-02   p_joint 1.990789e-03

Joint ci ratio: 9.985584e-02	ci left: 1.897640e-03	ci right 2.098344e-03	k: 1537	n:770000
Cons ci ratio: 3.070193e-02	ci left: 2.041408e-02	ci right 2.105188e-02	k: 15963	n:770000
KS ci ratio: 1.018665e-01	ci left: 1.821680e-03	ci right 2.018461e-03	k: 1477	n:770000
SLC16A1   770000 perm   374 sec   (2058 perm/sec)   p_kst 1.918182e-03   p_cons 2.073117e-02   p_joint 1.996104e-03

Joint ci ratio: 1.429739e-01	ci left: 8.939752e-04	ci right 1.032851e-03	k: 750	n:780000
Cons ci ratio: 3.049998e-02	ci left: 2.042207e-02	ci right 2.105585e-02	k: 16175	n:780000
KS ci ratio: 1.008140e-01	ci left: 1.837062e-03	ci right 2.033333e-03	k: 1508	n:780000
SLC16A1   780000 perm   382 sec   (2042 perm/sec)   p_kst 1.933333e-03   p_cons 2.073718e-02   p_joint 9.615385e-04

Joint ci ratio: 1.419380e-01	ci left: 8.960869e-04	ci right 1.034197e-03	k: 761	n:790000
Cons ci ratio: 3.030386e-02	ci left: 2.042737e-02	ci right 2.105717e-02	k: 16385	n:790000
KS ci ratio: 1.001196e-01	ci left: 1.839723e-03	ci right 2.034844e-03	k: 1529	n:790000
SLC16A1   790000 perm   390 sec   (2026 perm/sec)   p_kst 1.935443e-03   p_cons 2.074051e-02   p_joint 9.632911e-04

Joint ci ratio: 1.404704e-01	ci left: 9.041795e-04	ci right 1.041975e-03	k: 777	n:800000
Cons ci ratio: 3.013187e-02	ci left: 2.040525e-02	ci right 2.103073e-02	k: 16573	n:800000
KS ci ratio: 9.931117e-02	ci left: 1.847197e-03	ci right 2.041438e-03	k: 1554	n:800000
SLC16A1   800000 perm   398 sec   (2011 perm/sec)   p_kst 1.942500e-03   p_cons 2.071625e-02   p_joint 9.712500e-04

Joint ci ratio: 1.395762e-01	ci left: 9.049300e-04	ci right 1.041889e-03	k: 787	n:810000
Cons ci ratio: 2.995001e-02	ci left: 2.040084e-02	ci right 2.102235e-02	k: 16775	n:810000
KS ci ratio: 9.845959e-02	ci left: 1.856902e-03	ci right 2.050392e-03	k: 1581	n:810000
SLC16A1   810000 perm   406 sec   (1995 perm/sec)   p_kst 1.951852e-03   p_cons 2.070988e-02   p_joint 9.716049e-04

Joint ci ratio: 1.413845e-01	ci left: 8.703601e-04	ci right 1.003937e-03	k: 767	n:820000
Cons ci ratio: 2.977857e-02	ci left: 2.038687e-02	ci right 2.100433e-02	k: 16969	n:820000
KS ci ratio: 9.769040e-02	ci left: 1.863997e-03	ci right 2.056622e-03	k: 1606	n:820000
SLC16A1   820000 perm   414 sec   (1981 perm/sec)   p_kst 1.958537e-03   p_cons 2.069390e-02   p_joint 9.353659e-04

Joint ci ratio: 1.084274e-01	ci left: 1.487020e-03	ci right 1.658657e-03	k: 1304	n:830000
Cons ci ratio: 2.958716e-02	ci left: 2.040434e-02	ci right 2.101829e-02	k: 17189	n:830000
KS ci ratio: 9.720789e-02	ci left: 1.860346e-03	ci right 2.051590e-03	k: 1622	n:830000
SLC16A1   830000 perm   422 sec   (1966 perm/sec)   p_kst 1.954217e-03   p_cons 2.070964e-02   p_joint 1.571084e-03

Joint ci ratio: 1.079736e-01	ci left: 1.482058e-03	ci right 1.652361e-03	k: 1315	n:840000
Cons ci ratio: 2.942012e-02	ci left: 2.039304e-02	ci right 2.100313e-02	k: 17385	n:840000
KS ci ratio: 9.667338e-02	ci left: 1.859108e-03	ci right 2.049114e-03	k: 1640	n:840000
SLC16A1   840000 perm   431 sec   (1951 perm/sec)   p_kst 1.952381e-03   p_cons 2.069643e-02   p_joint 1.565476e-03

Joint ci ratio: 1.074443e-01	ci left: 1.479504e-03	ci right 1.648627e-03	k: 1328	n:850000
Cons ci ratio: 2.926181e-02	ci left: 2.037384e-02	ci right 2.098002e-02	k: 17574	n:850000
KS ci ratio: 9.597385e-02	ci left: 1.864792e-03	ci right 2.053922e-03	k: 1664	n:850000
SLC16A1   850000 perm   439 sec   (1937 perm/sec)   p_kst 1.957647e-03   p_cons 2.067529e-02   p_joint 1.562353e-03

Joint ci ratio: 1.069228e-01	ci left: 1.477012e-03	ci right 1.644979e-03	k: 1341	n:860000
Cons ci ratio: 2.908932e-02	ci left: 2.037818e-02	ci right 2.098086e-02	k: 17783	n:860000
KS ci ratio: 9.543093e-02	ci left: 1.864672e-03	ci right 2.052661e-03	k: 1683	n:860000
SLC16A1   860000 perm   448 sec   (1921 perm/sec)   p_kst 1.956977e-03   p_cons 2.067791e-02   p_joint 1.559302e-03

Joint ci ratio: 1.062127e-01	ci left: 1.480173e-03	ci right 1.647312e-03	k: 1359	n:870000
Cons ci ratio: 2.890345e-02	ci left: 2.040527e-02	ci right 2.100483e-02	k: 18012	n:870000
KS ci ratio: 9.478565e-02	ci left: 1.869047e-03	ci right 2.056132e-03	k: 1706	n:870000
SLC16A1   870000 perm   457 sec   (1904 perm/sec)   p_kst 1.960920e-03   p_cons 2.070345e-02   p_joint 1.562069e-03

Joint ci ratio: 1.055934e-01	ci left: 1.481053e-03	ci right 1.647255e-03	k: 1375	n:880000
Cons ci ratio: 2.874765e-02	ci left: 2.039451e-02	ci right 2.099047e-02	k: 18208	n:880000
KS ci ratio: 9.428990e-02	ci left: 1.867779e-03	ci right 2.053705e-03	k: 1724	n:880000
SLC16A1   880000 perm   466 sec   (1888 perm/sec)   p_kst 1.959091e-03   p_cons 2.069091e-02   p_joint 1.562500e-03

Joint ci ratio: 1.051741e-01	ci left: 1.476446e-03	ci right 1.641432e-03	k: 1386	n:890000
Cons ci ratio: 2.858009e-02	ci left: 2.040408e-02	ci right 2.099679e-02	k: 18422	n:890000
KS ci ratio: 9.377491e-02	ci left: 1.867639e-03	ci right 2.052480e-03	k: 1743	n:890000
SLC16A1   890000 perm   475 sec   (1874 perm/sec)   p_kst 1.958427e-03   p_cons 2.069888e-02   p_joint 1.557303e-03

Joint ci ratio: 1.047973e-01	ci left: 1.470860e-03	ci right 1.634597e-03	k: 1396	n:900000
Cons ci ratio: 2.840530e-02	ci left: 2.042780e-02	ci right 2.101751e-02	k: 18649	n:900000
KS ci ratio: 9.345434e-02	ci left: 1.859908e-03	ci right 2.043321e-03	k: 1755	n:900000
SLC16A1   900000 perm   484 sec   (1860 perm/sec)   p_kst 1.950000e-03   p_cons 2.072111e-02   p_joint 1.551111e-03

Joint ci ratio: 1.042393e-01	ci left: 1.470749e-03	ci right 1.633549e-03	k: 1411	n:910000
Cons ci ratio: 2.821918e-02	ci left: 2.047174e-02	ci right 2.105879e-02	k: 18895	n:910000
KS ci ratio: 9.297909e-02	ci left: 1.858789e-03	ci right 2.041108e-03	k: 1773	n:910000
SLC16A1   910000 perm   493 sec   (1847 perm/sec)   p_kst 1.948352e-03   p_cons 2.076374e-02   p_joint 1.550549e-03

Joint ci ratio: 1.035085e-01	ci left: 1.475937e-03	ci right 1.638096e-03	k: 1431	n:920000
Cons ci ratio: 2.806813e-02	ci left: 2.046940e-02	ci right 2.105319e-02	k: 19099	n:920000
KS ci ratio: 9.227913e-02	ci left: 1.867253e-03	ci right 2.048949e-03	k: 1800	n:920000
SLC16A1   920000 perm   502 sec   (1832 perm/sec)   p_kst 1.956522e-03   p_cons 2.075978e-02   p_joint 1.555435e-03

Joint ci ratio: 1.030063e-01	ci left: 1.474732e-03	ci right 1.635925e-03	k: 1445	n:930000
Cons ci ratio: 2.792392e-02	ci left: 2.046071e-02	ci right 2.104120e-02	k: 19297	n:930000
KS ci ratio: 9.177096e-02	ci left: 1.868186e-03	ci right 2.048917e-03	k: 1820	n:930000
SLC16A1   930000 perm   511 sec   (1819 perm/sec)   p_kst 1.956989e-03   p_cons 2.074946e-02   p_joint 1.553763e-03

Joint ci ratio: 1.022312e-01	ci left: 1.481847e-03	ci right 1.642526e-03	k: 1467	n:940000
Cons ci ratio: 2.777463e-02	ci left: 2.046278e-02	ci right 2.104018e-02	k: 19505	n:940000
KS ci ratio: 9.114716e-02	ci left: 1.874299e-03	ci right 2.054324e-03	k: 1845	n:940000
SLC16A1   940000 perm   521 sec   (1806 perm/sec)   p_kst 1.962766e-03   p_cons 2.075000e-02   p_joint 1.560638e-03

Joint ci ratio: 1.016100e-01	ci left: 1.484713e-03	ci right 1.644666e-03	k: 1485	n:950000
Cons ci ratio: 2.761841e-02	ci left: 2.047841e-02	ci right 2.105294e-02	k: 19726	n:950000
KS ci ratio: 9.063303e-02	ci left: 1.876172e-03	ci right 2.055307e-03	k: 1866	n:950000
SLC16A1   950000 perm   530 sec   (1793 perm/sec)   p_kst 1.964211e-03   p_cons 2.076421e-02   p_joint 1.563158e-03

Joint ci ratio: 1.009328e-01	ci left: 1.489553e-03	ci right 1.648895e-03	k: 1505	n:960000
Cons ci ratio: 2.748803e-02	ci left: 2.045957e-02	ci right 2.103083e-02	k: 19914	n:960000
KS ci ratio: 9.015143e-02	ci left: 1.876991e-03	ci right 2.055202e-03	k: 1886	n:960000
SLC16A1   960000 perm   539 sec   (1781 perm/sec)   p_kst 1.964583e-03   p_cons 2.074375e-02   p_joint 1.567708e-03

Joint ci ratio: 1.005665e-01	ci left: 1.485251e-03	ci right 1.643522e-03	k: 1516	n:970000
Cons ci ratio: 2.734282e-02	ci left: 2.046571e-02	ci right 2.103407e-02	k: 20126	n:970000
KS ci ratio: 8.981912e-02	ci left: 1.871749e-03	ci right 2.048772e-03	k: 1900	n:970000
SLC16A1   970000 perm   548 sec   (1769 perm/sec)   p_kst 1.958763e-03   p_cons 2.074845e-02   p_joint 1.562887e-03

Joint ci ratio: 1.000076e-01	ci left: 1.487008e-03	ci right 1.644533e-03	k: 1533	n:980000
Cons ci ratio: 2.718964e-02	ci left: 2.048693e-02	ci right 2.105264e-02	k: 20353	n:980000
KS ci ratio: 8.925725e-02	ci left: 1.876591e-03	ci right 2.052904e-03	k: 1924	n:980000
SLC16A1   980000 perm   558 sec   (1758 perm/sec)   p_kst 1.963265e-03   p_cons 2.076837e-02   p_joint 1.564286e-03

Joint ci ratio: 9.945795e-02	ci left: 1.488731e-03	ci right 1.645522e-03	k: 1550	n:990000
Cons ci ratio: 2.705445e-02	ci left: 2.048465e-02	ci right 2.104745e-02	k: 20557	n:990000
KS ci ratio: 8.872861e-02	ci left: 1.880351e-03	ci right 2.055917e-03	k: 1947	n:990000
SLC16A1   990000 perm   567 sec   (1746 perm/sec)   p_kst 1.966667e-03   p_cons 2.076465e-02   p_joint 1.565657e-03

Outputting figure to mutsig2_images.part000000000158/SLC16A1.3_1519_990000_0.0019667_0.020765_0.0015657.png
                gene_name: SLC16A1
               theta_stop: 0.099 
                    nperm: 990000 
                     p_ks: 0.0020 
        ci_ks_bounds_left: 0.0019 
       ci_ks_bounds_right: 0.0021 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.0016 
     ci_joint_bounds_left: 0.0015 
    ci_joint_bounds_right: 0.0016 

Current progress: 70 percent done.
SLC16A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.229451e-02	ci left: 9.047348e-01	ci right 9.160249e-01	k: 9105	n:10000
Cons ci ratio: 3.175713e-02	ci left: 5.940342e-01	ci right 6.133054e-01	k: 6037	n:10000
KS ci ratio: 3.038068e-02	ci left: 6.151246e-01	ci right 6.342027e-01	k: 6247	n:10000
SLC16A14   10000 perm   2 sec   (5406 perm/sec)   p_kst 6.247000e-01   p_cons 6.037000e-01   p_joint 9.105000e-01

Outputting figure to mutsig2_images.part000000000158/SLC16A14.3_1549_10000_0.6247_0.6037_0.9105.png
                gene_name: SLC16A14
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 72 percent done.
SLC16A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.521376e-02	ci left: 2.055028e-01	ci right 2.216644e-01	k: 2135	n:10000
Cons ci ratio: 8.544729e-01	ci left: 1.222067e-03	ci right 3.087156e-03	k: 20	n:10000
KS ci ratio: 4.104012e-02	ci left: 4.671685e-01	ci right 4.868449e-01	k: 4770	n:10000
SLC16A2   10000 perm   2 sec   (5882 perm/sec)   p_kst 4.770000e-01   p_cons 2.000000e-03   p_joint 2.135000e-01

Joint ci ratio: 1.058684e-01	ci left: 6.074404e-02	ci right 6.758334e-02	k: 1282	n:20000
Cons ci ratio: 6.191709e-01	ci left: 1.386997e-03	ci right 2.664760e-03	k: 39	n:20000
KS ci ratio: 2.902205e-02	ci left: 4.700566e-01	ci right 4.839501e-01	k: 9540	n:20000
SLC16A2   20000 perm   4 sec   (5249 perm/sec)   p_kst 4.770000e-01   p_cons 1.950000e-03   p_joint 6.410000e-02

Joint ci ratio: 8.757789e-02	ci left: 5.985196e-02	ci right 6.536645e-02	k: 1877	n:30000
Cons ci ratio: 5.329553e-01	ci left: 1.323626e-03	ci right 2.310215e-03	k: 53	n:30000
KS ci ratio: 2.362592e-02	ci left: 4.728329e-01	ci right 4.841712e-01	k: 14355	n:30000
SLC16A2   30000 perm   6 sec   (5011 perm/sec)   p_kst 4.785000e-01   p_cons 1.766667e-03   p_joint 6.256667e-02

Joint ci ratio: 8.465658e-02	ci left: 4.871723e-02	ci right 5.304826e-02	k: 2034	n:40000
Cons ci ratio: 4.615547e-01	ci left: 1.386542e-03	ci right 2.238401e-03	k: 71	n:40000
KS ci ratio: 2.045886e-02	ci left: 4.736438e-01	ci right 4.834593e-01	k: 19142	n:40000
SLC16A2   40000 perm   8 sec   (4854 perm/sec)   p_kst 4.785500e-01   p_cons 1.775000e-03   p_joint 5.085000e-02

Joint ci ratio: 7.509541e-02	ci left: 4.973598e-02	ci right 5.363628e-02	k: 2583	n:50000
Cons ci ratio: 4.128281e-01	ci left: 1.429723e-03	ci right 2.189994e-03	k: 89	n:50000
KS ci ratio: 1.826066e-02	ci left: 4.752123e-01	ci right 4.839900e-01	k: 23980	n:50000
SLC16A2   50000 perm   11 sec   (4726 perm/sec)   p_kst 4.796000e-01   p_cons 1.780000e-03   p_joint 5.166000e-02

Joint ci ratio: 7.819599e-02	ci left: 3.862586e-02	ci right 4.178547e-02	k: 2411	n:60000
Cons ci ratio: 3.840512e-01	ci left: 1.401408e-03	ci right 2.081577e-03	k: 103	n:60000
KS ci ratio: 1.668642e-02	ci left: 4.750955e-01	ci right 4.831065e-01	k: 28746	n:60000
SLC16A2   60000 perm   13 sec   (4620 perm/sec)   p_kst 4.791000e-01   p_cons 1.716667e-03   p_joint 4.018333e-02

Joint ci ratio: 6.987233e-02	ci left: 4.152311e-02	ci right 4.454348e-02	k: 3011	n:70000
Cons ci ratio: 3.560530e-01	ci left: 1.421511e-03	ci right 2.049521e-03	k: 120	n:70000
KS ci ratio: 1.545266e-02	ci left: 4.752645e-01	ci right 4.826801e-01	k: 33528	n:70000
SLC16A2   70000 perm   15 sec   (4523 perm/sec)   p_kst 4.789714e-01   p_cons 1.714286e-03   p_joint 4.301429e-02

Joint ci ratio: 5.217334e-02	ci left: 6.419025e-02	ci right 6.764131e-02	k: 5272	n:80000
Cons ci ratio: 3.298304e-01	ci left: 1.472328e-03	ci right 2.064743e-03	k: 140	n:80000
KS ci ratio: 1.446906e-02	ci left: 4.750080e-01	ci right 4.819435e-01	k: 38278	n:80000
SLC16A2   80000 perm   18 sec   (4432 perm/sec)   p_kst 4.784750e-01   p_cons 1.750000e-03   p_joint 6.590000e-02

Joint ci ratio: 4.218171e-02	ci left: 8.570571e-02	ci right 8.940981e-02	k: 7879	n:90000
Cons ci ratio: 3.067582e-01	ci left: 1.533684e-03	ci right 2.099201e-03	k: 162	n:90000
KS ci ratio: 1.363575e-02	ci left: 4.754204e-01	ci right 4.819587e-01	k: 43082	n:90000
SLC16A2   90000 perm   21 sec   (4349 perm/sec)   p_kst 4.786889e-01   p_cons 1.800000e-03   p_joint 8.754444e-02

Joint ci ratio: 4.511391e-02	ci left: 6.861411e-02	ci right 7.179087e-02	k: 7019	n:100000
Cons ci ratio: 2.833688e-01	ci left: 1.639636e-03	ci right 2.189898e-03	k: 190	n:100000
KS ci ratio: 1.291140e-02	ci left: 4.765392e-01	ci right 4.827420e-01	k: 47964	n:100000
SLC16A2   100000 perm   23 sec   (4272 perm/sec)   p_kst 4.796400e-01   p_cons 1.900000e-03   p_joint 7.019000e-02

Joint ci ratio: 4.604404e-02	ci left: 6.039305e-02	ci right 6.324829e-02	k: 6799	n:110000
Cons ci ratio: 2.722011e-01	ci left: 1.625903e-03	ci right 2.146377e-03	k: 206	n:110000
KS ci ratio: 1.231311e-02	ci left: 4.765801e-01	ci right 4.824937e-01	k: 52749	n:110000
SLC16A2   110000 perm   26 sec   (4195 perm/sec)   p_kst 4.795364e-01   p_cons 1.872727e-03   p_joint 6.180909e-02

Joint ci ratio: 4.562165e-02	ci left: 5.663456e-02	ci right 5.928685e-02	k: 6954	n:120000
Cons ci ratio: 2.587925e-01	ci left: 1.661553e-03	ci right 2.163008e-03	k: 228	n:120000
KS ci ratio: 1.179726e-02	ci left: 4.763532e-01	ci right 4.820145e-01	k: 57502	n:120000
SLC16A2   120000 perm   29 sec   (4113 perm/sec)   p_kst 4.791833e-01   p_cons 1.900000e-03   p_joint 5.795000e-02

Joint ci ratio: 4.313601e-02	ci left: 5.844089e-02	ci right 6.102495e-02	k: 7764	n:130000
Cons ci ratio: 2.496925e-01	ci left: 1.656180e-03	ci right 2.135706e-03	k: 245	n:130000
KS ci ratio: 1.133460e-02	ci left: 4.764579e-01	ci right 4.818968e-01	k: 62293	n:130000
SLC16A2   130000 perm   32 sec   (4047 perm/sec)   p_kst 4.791769e-01   p_cons 1.884615e-03   p_joint 5.972308e-02

Joint ci ratio: 4.034750e-02	ci left: 6.188845e-02	ci right 6.444396e-02	k: 8842	n:140000
Cons ci ratio: 2.428814e-01	ci left: 1.631708e-03	ci right 2.089319e-03	k: 259	n:140000
KS ci ratio: 1.092336e-02	ci left: 4.765086e-01	ci right 4.817494e-01	k: 67078	n:140000
SLC16A2   140000 perm   35 sec   (3983 perm/sec)   p_kst 4.791286e-01   p_cons 1.850000e-03   p_joint 6.315714e-02

Joint ci ratio: 4.218995e-02	ci left: 5.327072e-02	ci right 5.557321e-02	k: 8162	n:150000
Cons ci ratio: 2.357383e-01	ci left: 1.623198e-03	ci right 2.063082e-03	k: 275	n:150000
KS ci ratio: 1.053612e-02	ci left: 4.773955e-01	ci right 4.824586e-01	k: 71989	n:150000
SLC16A2   150000 perm   38 sec   (3921 perm/sec)   p_kst 4.799267e-01   p_cons 1.833333e-03   p_joint 5.441333e-02

Joint ci ratio: 4.333648e-02	ci left: 4.759473e-02	ci right 4.970916e-02	k: 7783	n:160000
Cons ci ratio: 2.307795e-01	ci left: 1.592363e-03	ci right 2.013519e-03	k: 287	n:160000
KS ci ratio: 1.021527e-02	ci left: 4.768057e-01	ci right 4.817076e-01	k: 76681	n:160000
SLC16A2   160000 perm   41 sec   (3861 perm/sec)   p_kst 4.792562e-01   p_cons 1.793750e-03   p_joint 4.864375e-02

Joint ci ratio: 4.171097e-02	ci left: 4.835716e-02	ci right 5.042295e-02	k: 8395	n:170000
Cons ci ratio: 2.246256e-01	ci left: 1.587444e-03	ci right 1.994554e-03	k: 303	n:170000
KS ci ratio: 9.908005e-03	ci left: 4.769932e-01	ci right 4.817486e-01	k: 81493	n:170000
SLC16A2   170000 perm   45 sec   (3804 perm/sec)   p_kst 4.793706e-01   p_cons 1.782353e-03   p_joint 4.938235e-02

Joint ci ratio: 4.295433e-02	ci left: 4.327154e-02	ci right 4.517651e-02	k: 7959	n:180000
Cons ci ratio: 2.175811e-01	ci left: 1.604213e-03	ci right 2.000997e-03	k: 323	n:180000
KS ci ratio: 9.624966e-03	ci left: 4.772619e-01	ci right 4.818832e-01	k: 86323	n:180000
SLC16A2   180000 perm   48 sec   (3748 perm/sec)   p_kst 4.795722e-01   p_cons 1.794444e-03   p_joint 4.421667e-02

Joint ci ratio: 3.875534e-02	ci left: 5.010366e-02	ci right 5.208901e-02	k: 9707	n:190000
Cons ci ratio: 2.105480e-01	ci left: 1.629366e-03	ci right 2.017665e-03	k: 345	n:190000
KS ci ratio: 9.357570e-03	ci left: 4.778933e-01	ci right 4.823915e-01	k: 91227	n:190000
SLC16A2   190000 perm   51 sec   (3693 perm/sec)   p_kst 4.801421e-01   p_cons 1.815789e-03   p_joint 5.108947e-02

Joint ci ratio: 4.034942e-02	ci left: 4.415499e-02	ci right 4.597823e-02	k: 9012	n:200000
Cons ci ratio: 2.061290e-01	ci left: 1.618984e-03	ci right 1.995691e-03	k: 360	n:200000
KS ci ratio: 9.113003e-03	ci left: 4.783681e-01	ci right 4.827524e-01	k: 96112	n:200000
SLC16A2   200000 perm   55 sec   (3640 perm/sec)   p_kst 4.805600e-01   p_cons 1.800000e-03   p_joint 4.506000e-02

Joint ci ratio: 3.438530e-02	ci left: 5.727796e-02	ci right 5.928663e-02	k: 12238	n:210000
Cons ci ratio: 2.011746e-01	ci left: 1.623234e-03	ci right 1.990736e-03	k: 378	n:210000
KS ci ratio: 8.892841e-03	ci left: 4.784515e-01	ci right 4.827300e-01	k: 100924	n:210000
SLC16A2   210000 perm   58 sec   (3591 perm/sec)   p_kst 4.805905e-01   p_cons 1.800000e-03   p_joint 5.827619e-02

Joint ci ratio: 3.483170e-02	ci left: 5.348742e-02	ci right 5.538798e-02	k: 11975	n:220000
Cons ci ratio: 1.960670e-01	ci left: 1.635840e-03	ci right 1.995671e-03	k: 398	n:220000
KS ci ratio: 8.701043e-03	ci left: 4.777740e-01	ci right 4.819538e-01	k: 105570	n:220000
SLC16A2   220000 perm   62 sec   (3540 perm/sec)   p_kst 4.798636e-01   p_cons 1.809091e-03   p_joint 5.443182e-02

Joint ci ratio: 3.371909e-02	ci left: 5.456343e-02	ci right 5.643910e-02	k: 12764	n:230000
Cons ci ratio: 1.906471e-01	ci left: 1.659878e-03	ci right 2.013735e-03	k: 421	n:230000
KS ci ratio: 8.506429e-03	ci left: 4.780172e-01	ci right 4.821051e-01	k: 110414	n:230000
SLC16A2   230000 perm   66 sec   (3491 perm/sec)   p_kst 4.800609e-01   p_cons 1.830435e-03   p_joint 5.549565e-02

Joint ci ratio: 3.329593e-02	ci left: 5.369020e-02	ci right 5.551224e-02	k: 13103	n:240000
Cons ci ratio: 1.869198e-01	ci left: 1.658203e-03	ci right 2.004006e-03	k: 438	n:240000
KS ci ratio: 8.330986e-03	ci left: 4.778411e-01	ci right 4.818427e-01	k: 115162	n:240000
SLC16A2   240000 perm   70 sec   (3444 perm/sec)   p_kst 4.798417e-01   p_cons 1.825000e-03   p_joint 5.459583e-02

Joint ci ratio: 3.235580e-02	ci left: 5.455804e-02	ci right 5.635628e-02	k: 13863	n:250000
Cons ci ratio: 1.840104e-01	ci left: 1.645273e-03	ci right 1.982444e-03	k: 452	n:250000
KS ci ratio: 8.156876e-03	ci left: 4.782358e-01	ci right 4.821566e-01	k: 120049	n:250000
SLC16A2   250000 perm   74 sec   (3399 perm/sec)   p_kst 4.801960e-01   p_cons 1.808000e-03   p_joint 5.545200e-02

Joint ci ratio: 3.237382e-02	ci left: 5.251596e-02	ci right 5.424786e-02	k: 13878	n:260000
Cons ci ratio: 1.798870e-01	ci left: 1.659086e-03	ci right 1.990639e-03	k: 473	n:260000
KS ci ratio: 7.998598e-03	ci left: 4.782664e-01	ci right 4.821110e-01	k: 124849	n:260000
SLC16A2   260000 perm   77 sec   (3355 perm/sec)   p_kst 4.801885e-01   p_cons 1.819231e-03   p_joint 5.337692e-02

Joint ci ratio: 3.215440e-02	ci left: 5.133456e-02	ci right 5.301581e-02	k: 14086	n:270000
Cons ci ratio: 1.772893e-01	ci left: 1.647171e-03	ci right 1.971080e-03	k: 487	n:270000
KS ci ratio: 7.847326e-03	ci left: 4.784139e-01	ci right 4.821866e-01	k: 129681	n:270000
SLC16A2   270000 perm   82 sec   (3312 perm/sec)   p_kst 4.803000e-01   p_cons 1.803704e-03   p_joint 5.217037e-02

Joint ci ratio: 3.050238e-02	ci left: 5.484979e-02	ci right 5.655227e-02	k: 15595	n:280000
Cons ci ratio: 1.739353e-01	ci left: 1.653219e-03	ci right 1.971521e-03	k: 506	n:280000
KS ci ratio: 7.709838e-03	ci left: 4.781943e-01	ci right 4.818989e-01	k: 134413	n:280000
SLC16A2   280000 perm   86 sec   (3271 perm/sec)   p_kst 4.800464e-01   p_cons 1.807143e-03   p_joint 5.569643e-02

Joint ci ratio: 3.100149e-02	ci left: 5.144113e-02	ci right 5.306439e-02	k: 15152	n:290000
Cons ci ratio: 1.714190e-01	ci left: 1.645699e-03	ci right 1.957495e-03	k: 521	n:290000
KS ci ratio: 7.574095e-03	ci left: 4.783353e-01	ci right 4.819754e-01	k: 139245	n:290000
SLC16A2   290000 perm   90 sec   (3230 perm/sec)   p_kst 4.801552e-01   p_cons 1.796552e-03   p_joint 5.224828e-02

Joint ci ratio: 3.221759e-02	ci left: 4.626854e-02	ci right 4.778689e-02	k: 14107	n:300000
Cons ci ratio: 1.686943e-01	ci left: 1.645097e-03	ci right 1.951322e-03	k: 538	n:300000
KS ci ratio: 7.447167e-03	ci left: 4.783408e-01	ci right 4.819196e-01	k: 144039	n:300000
SLC16A2   300000 perm   94 sec   (3190 perm/sec)   p_kst 4.801300e-01   p_cons 1.793333e-03   p_joint 4.702333e-02

Joint ci ratio: 3.184790e-02	ci left: 4.585103e-02	ci right 4.733810e-02	k: 14443	n:310000
Cons ci ratio: 1.665463e-01	ci left: 1.635296e-03	ci right 1.935431e-03	k: 552	n:310000
KS ci ratio: 7.326414e-03	ci left: 4.783463e-01	ci right 4.818669e-01	k: 148833	n:310000
SLC16A2   310000 perm   98 sec   (3152 perm/sec)   p_kst 4.801065e-01   p_cons 1.780645e-03   p_joint 4.659032e-02

Joint ci ratio: 3.131213e-02	ci left: 4.595909e-02	ci right 4.742413e-02	k: 14940	n:320000
Cons ci ratio: 1.636134e-01	ci left: 1.644111e-03	ci right 1.940028e-03	k: 572	n:320000
KS ci ratio: 7.205574e-03	ci left: 4.787519e-01	ci right 4.822172e-01	k: 153755	n:320000
SLC16A2   320000 perm   103 sec   (3114 perm/sec)   p_kst 4.804844e-01   p_cons 1.787500e-03   p_joint 4.668750e-02

Joint ci ratio: 3.082661e-02	ci left: 4.599160e-02	ci right 4.743455e-02	k: 15414	n:330000
Cons ci ratio: 1.609662e-01	ci left: 1.649528e-03	ci right 1.941151e-03	k: 591	n:330000
KS ci ratio: 7.094606e-03	ci left: 4.788455e-01	ci right 4.822578e-01	k: 158582	n:330000
SLC16A2   330000 perm   107 sec   (3076 perm/sec)   p_kst 4.805515e-01   p_cons 1.790909e-03   p_joint 4.670909e-02

Joint ci ratio: 2.990482e-02	ci left: 4.738606e-02	ci right 4.882754e-02	k: 16355	n:340000
Cons ci ratio: 1.581843e-01	ci left: 1.660311e-03	ci right 1.948286e-03	k: 612	n:340000
KS ci ratio: 6.988941e-03	ci left: 4.789105e-01	ci right 4.822722e-01	k: 163401	n:340000
SLC16A2   340000 perm   112 sec   (3029 perm/sec)   p_kst 4.805912e-01   p_cons 1.800000e-03   p_joint 4.810294e-02

Joint ci ratio: 3.023011e-02	ci left: 4.514663e-02	ci right 4.653518e-02	k: 16043	n:350000
Cons ci ratio: 1.552966e-01	ci left: 1.676012e-03	ci right 1.960909e-03	k: 635	n:350000
KS ci ratio: 6.885890e-03	ci left: 4.791149e-01	ci right 4.824283e-01	k: 168270	n:350000
SLC16A2   350000 perm   117 sec   (2991 perm/sec)   p_kst 4.807714e-01   p_cons 1.814286e-03   p_joint 4.583714e-02

Joint ci ratio: 2.936830e-02	ci left: 4.646263e-02	ci right 4.785023e-02	k: 16975	n:360000
Cons ci ratio: 1.523301e-01	ci left: 1.696229e-03	ci right 1.978553e-03	k: 660	n:360000
KS ci ratio: 6.790664e-03	ci left: 4.790584e-01	ci right 4.823253e-01	k: 173049	n:360000
SLC16A2   360000 perm   122 sec   (2958 perm/sec)   p_kst 4.806917e-01   p_cons 1.833333e-03   p_joint 4.715278e-02

Joint ci ratio: 3.064972e-02	ci left: 4.168858e-02	ci right 4.298887e-02	k: 15664	n:370000
Cons ci ratio: 1.505197e-01	ci left: 1.691989e-03	ci right 1.969960e-03	k: 676	n:370000
KS ci ratio: 6.699428e-03	ci left: 4.789943e-01	ci right 4.822168e-01	k: 177824	n:370000
SLC16A2   370000 perm   127 sec   (2924 perm/sec)   p_kst 4.806054e-01   p_cons 1.827027e-03   p_joint 4.233514e-02

Joint ci ratio: 3.057605e-02	ci left: 4.082626e-02	ci right 4.209654e-02	k: 15754	n:380000
Cons ci ratio: 1.484509e-01	ci left: 1.695593e-03	ci right 1.969987e-03	k: 695	n:380000
KS ci ratio: 6.613516e-03	ci left: 4.788024e-01	ci right 4.819821e-01	k: 182549	n:380000
SLC16A2   380000 perm   131 sec   (2892 perm/sec)   p_kst 4.803921e-01   p_cons 1.828947e-03   p_joint 4.145789e-02

Joint ci ratio: 3.092797e-02	ci left: 3.894937e-02	ci right 4.017544e-02	k: 15428	n:390000
Cons ci ratio: 1.468772e-01	ci left: 1.689157e-03	ci right 1.959357e-03	k: 710	n:390000
KS ci ratio: 6.530053e-03	ci left: 4.786796e-01	ci right 4.818181e-01	k: 187297	n:390000
SLC16A2   390000 perm   136 sec   (2861 perm/sec)   p_kst 4.802487e-01   p_cons 1.820513e-03   p_joint 3.955897e-02

Joint ci ratio: 3.101715e-02	ci left: 3.780163e-02	ci right 3.899506e-02	k: 15358	n:400000
Cons ci ratio: 1.443599e-01	ci left: 1.707152e-03	ci right 1.975147e-03	k: 735	n:400000
KS ci ratio: 6.446280e-03	ci left: 4.788256e-01	ci right 4.819247e-01	k: 192150	n:400000
SLC16A2   400000 perm   141 sec   (2830 perm/sec)   p_kst 4.803750e-01   p_cons 1.837500e-03   p_joint 3.839500e-02

Joint ci ratio: 3.072901e-02	ci left: 3.758870e-02	ci right 3.876418e-02	k: 15651	n:410000
Cons ci ratio: 1.425318e-01	ci left: 1.710192e-03	ci right 1.974976e-03	k: 754	n:410000
KS ci ratio: 6.366179e-03	ci left: 4.789233e-01	ci right 4.819843e-01	k: 196986	n:410000
SLC16A2   410000 perm   146 sec   (2801 perm/sec)   p_kst 4.804537e-01   p_cons 1.839024e-03   p_joint 3.817317e-02

Joint ci ratio: 2.901020e-02	ci left: 4.105721e-02	ci right 4.226817e-02	k: 17497	n:420000
Cons ci ratio: 1.405896e-01	ci left: 1.717703e-03	ci right 1.979722e-03	k: 775	n:420000
KS ci ratio: 6.291061e-03	ci left: 4.788523e-01	ci right 4.818766e-01	k: 201753	n:420000
SLC16A2   420000 perm   152 sec   (2770 perm/sec)   p_kst 4.803643e-01   p_cons 1.845238e-03   p_joint 4.165952e-02

Joint ci ratio: 3.025831e-02	ci left: 3.699644e-02	ci right 3.813538e-02	k: 16152	n:430000
Cons ci ratio: 1.393390e-01	ci left: 1.709174e-03	ci right 1.967380e-03	k: 789	n:430000
KS ci ratio: 6.215500e-03	ci left: 4.790289e-01	ci right 4.820179e-01	k: 206625	n:430000
SLC16A2   430000 perm   157 sec   (2741 perm/sec)   p_kst 4.805233e-01   p_cons 1.834884e-03   p_joint 3.756279e-02

Joint ci ratio: 3.032928e-02	ci left: 3.602226e-02	ci right 3.713385e-02	k: 16093	n:440000
Cons ci ratio: 1.384667e-01	ci left: 1.692266e-03	ci right 1.946185e-03	k: 799	n:440000
KS ci ratio: 6.143660e-03	ci left: 4.791114e-01	ci right 4.820662e-01	k: 211459	n:440000
SLC16A2   440000 perm   162 sec   (2712 perm/sec)   p_kst 4.805886e-01   p_cons 1.815909e-03   p_joint 3.657500e-02

Joint ci ratio: 2.911720e-02	ci left: 3.815376e-02	ci right 3.928330e-02	k: 17422	n:450000
Cons ci ratio: 1.373560e-01	ci left: 1.682551e-03	ci right 1.932822e-03	k: 812	n:450000
KS ci ratio: 6.074362e-03	ci left: 4.791815e-01	ci right 4.821032e-01	k: 216289	n:450000
SLC16A2   450000 perm   168 sec   (2684 perm/sec)   p_kst 4.806422e-01   p_cons 1.804444e-03   p_joint 3.871556e-02

Joint ci ratio: 2.866876e-02	ci left: 3.849634e-02	ci right 3.961817e-02	k: 17965	n:460000
Cons ci ratio: 1.359422e-01	ci left: 1.681667e-03	ci right 1.929023e-03	k: 829	n:460000
KS ci ratio: 6.008613e-03	ci left: 4.791444e-01	ci right 4.820342e-01	k: 221071	n:460000
SLC16A2   460000 perm   173 sec   (2657 perm/sec)   p_kst 4.805891e-01   p_cons 1.802174e-03   p_joint 3.905435e-02

Joint ci ratio: 2.852387e-02	ci left: 3.808063e-02	ci right 3.918464e-02	k: 18156	n:470000
Cons ci ratio: 1.343331e-01	ci left: 1.687002e-03	ci right 1.931971e-03	k: 849	n:470000
KS ci ratio: 5.944016e-03	ci left: 4.791877e-01	ci right 4.820466e-01	k: 225890	n:470000
SLC16A2   470000 perm   179 sec   (2630 perm/sec)   p_kst 4.806170e-01   p_cons 1.806383e-03   p_joint 3.862979e-02

Joint ci ratio: 2.823415e-02	ci left: 3.806298e-02	ci right 3.915510e-02	k: 18531	n:480000
Cons ci ratio: 1.336288e-01	ci left: 1.669976e-03	ci right 1.911101e-03	k: 858	n:480000
KS ci ratio: 5.883005e-03	ci left: 4.790982e-01	ci right 4.819271e-01	k: 230646	n:480000
SLC16A2   480000 perm   184 sec   (2603 perm/sec)   p_kst 4.805125e-01   p_cons 1.787500e-03   p_joint 3.860625e-02

Joint ci ratio: 2.805432e-02	ci left: 3.778056e-02	ci right 3.885756e-02	k: 18775	n:490000
Cons ci ratio: 1.326296e-01	ci left: 1.661542e-03	ci right 1.899513e-03	k: 871	n:490000
KS ci ratio: 5.823311e-03	ci left: 4.790573e-01	ci right 4.818572e-01	k: 235424	n:490000
SLC16A2   490000 perm   190 sec   (2577 perm/sec)   p_kst 4.804571e-01   p_cons 1.777551e-03   p_joint 3.831633e-02

Joint ci ratio: 2.895949e-02	ci left: 3.483786e-02	ci right 3.586354e-02	k: 17674	n:500000
Cons ci ratio: 1.315038e-01	ci left: 1.657320e-03	ci right 1.892514e-03	k: 886	n:500000
KS ci ratio: 5.765282e-03	ci left: 4.790283e-01	ci right 4.818000e-01	k: 240207	n:500000
SLC16A2   500000 perm   196 sec   (2551 perm/sec)   p_kst 4.804140e-01   p_cons 1.772000e-03   p_joint 3.534800e-02

Joint ci ratio: 2.879317e-02	ci left: 3.456348e-02	ci right 3.557514e-02	k: 17884	n:510000
Cons ci ratio: 1.306239e-01	ci left: 1.647581e-03	ci right 1.879707e-03	k: 898	n:510000
KS ci ratio: 5.708372e-03	ci left: 4.790515e-01	ci right 4.817958e-01	k: 245016	n:510000
SLC16A2   510000 perm   202 sec   (2527 perm/sec)   p_kst 4.804235e-01   p_cons 1.760784e-03   p_joint 3.506667e-02

Joint ci ratio: 2.773222e-02	ci left: 3.648857e-02	ci right 3.751660e-02	k: 19240	n:520000
Cons ci ratio: 1.293355e-01	ci left: 1.649386e-03	ci right 1.879299e-03	k: 916	n:520000
KS ci ratio: 5.653201e-03	ci left: 4.790662e-01	ci right 4.817840e-01	k: 249821	n:520000
SLC16A2   520000 perm   208 sec   (2502 perm/sec)   p_kst 4.804250e-01   p_cons 1.761538e-03   p_joint 3.700000e-02

Joint ci ratio: 2.734508e-02	ci left: 3.681579e-02	ci right 3.783833e-02	k: 19782	n:530000
Cons ci ratio: 1.281531e-01	ci left: 1.649308e-03	ci right 1.876948e-03	k: 933	n:530000
KS ci ratio: 5.599112e-03	ci left: 4.791239e-01	ci right 4.818159e-01	k: 254649	n:530000
SLC16A2   530000 perm   214 sec   (2479 perm/sec)   p_kst 4.804698e-01   p_cons 1.760377e-03   p_joint 3.732453e-02

Joint ci ratio: 2.715392e-02	ci left: 3.665448e-02	ci right 3.766531e-02	k: 20065	n:540000
Cons ci ratio: 1.268024e-01	ci left: 1.654622e-03	ci right 1.880407e-03	k: 953	n:540000
KS ci ratio: 5.546897e-03	ci left: 4.791481e-01	ci right 4.818151e-01	k: 259460	n:540000
SLC16A2   540000 perm   220 sec   (2455 perm/sec)   p_kst 4.804815e-01   p_cons 1.764815e-03   p_joint 3.715741e-02

Joint ci ratio: 2.723749e-02	ci left: 3.579820e-02	ci right 3.678851e-02	k: 19960	n:550000
Cons ci ratio: 1.259477e-01	ci left: 1.647426e-03	ci right 1.870602e-03	k: 966	n:550000
KS ci ratio: 5.497938e-03	ci left: 4.790061e-01	ci right 4.816487e-01	k: 264180	n:550000
SLC16A2   550000 perm   226 sec   (2429 perm/sec)   p_kst 4.803273e-01   p_cons 1.756364e-03   p_joint 3.629091e-02

Joint ci ratio: 2.535504e-02	ci left: 4.041647e-02	ci right 4.145615e-02	k: 22923	n:560000
Cons ci ratio: 1.248551e-01	ci left: 1.647413e-03	ci right 1.868507e-03	k: 983	n:560000
KS ci ratio: 5.447932e-03	ci left: 4.790817e-01	ci right 4.817006e-01	k: 269019	n:560000
SLC16A2   560000 perm   233 sec   (2402 perm/sec)   p_kst 4.803911e-01   p_cons 1.755357e-03   p_joint 4.093393e-02

Joint ci ratio: 2.544327e-02	ci left: 3.947008e-02	ci right 4.048899e-02	k: 22787	n:570000
Cons ci ratio: 1.239766e-01	ci left: 1.642308e-03	ci right 1.861052e-03	k: 997	n:570000
KS ci ratio: 5.400234e-03	ci left: 4.790654e-01	ci right 4.816611e-01	k: 273807	n:570000
SLC16A2   570000 perm   240 sec   (2375 perm/sec)   p_kst 4.803632e-01   p_cons 1.749123e-03   p_joint 3.997719e-02

Joint ci ratio: 2.517484e-02	ci left: 3.962051e-02	ci right 4.063236e-02	k: 23272	n:580000
Cons ci ratio: 1.226319e-01	ci left: 1.650753e-03	ci right 1.868065e-03	k: 1019	n:580000
KS ci ratio: 5.352140e-03	ci left: 4.792014e-01	ci right 4.817747e-01	k: 278683	n:580000
SLC16A2   580000 perm   247 sec   (2351 perm/sec)   p_kst 4.804879e-01   p_cons 1.756897e-03   p_joint 4.012414e-02

Joint ci ratio: 2.481800e-02	ci left: 4.006580e-02	ci right 4.107431e-02	k: 23935	n:590000
Cons ci ratio: 1.211554e-01	ci left: 1.663856e-03	ci right 1.880066e-03	k: 1044	n:590000
KS ci ratio: 5.306893e-03	ci left: 4.791837e-01	ci right 4.817351e-01	k: 283471	n:590000
SLC16A2   590000 perm   254 sec   (2326 perm/sec)   p_kst 4.804593e-01   p_cons 1.769492e-03   p_joint 4.056780e-02

Joint ci ratio: 2.482242e-02	ci left: 3.941112e-02	ci right 4.040333e-02	k: 23943	n:600000
Cons ci ratio: 1.202953e-01	ci left: 1.660370e-03	ci right 1.874487e-03	k: 1059	n:600000
KS ci ratio: 5.262477e-03	ci left: 4.791951e-01	ci right 4.817251e-01	k: 288276	n:600000
SLC16A2   600000 perm   260 sec   (2304 perm/sec)   p_kst 4.804600e-01   p_cons 1.765000e-03   p_joint 3.990500e-02

Joint ci ratio: 2.548787e-02	ci left: 3.685354e-02	ci right 3.780660e-02	k: 22770	n:610000
Cons ci ratio: 1.193422e-01	ci left: 1.660184e-03	ci right 1.872461e-03	k: 1076	n:610000
KS ci ratio: 5.218951e-03	ci left: 4.792258e-01	ci right 4.817350e-01	k: 293093	n:610000
SLC16A2   610000 perm   267 sec   (2284 perm/sec)   p_kst 4.804803e-01   p_cons 1.763934e-03   p_joint 3.732787e-02

Joint ci ratio: 2.544137e-02	ci left: 3.640967e-02	ci right 3.734950e-02	k: 22864	n:620000
Cons ci ratio: 1.184657e-01	ci left: 1.658446e-03	ci right 1.868834e-03	k: 1092	n:620000
KS ci ratio: 5.177508e-03	ci left: 4.791573e-01	ci right 4.816461e-01	k: 297849	n:620000
SLC16A2   620000 perm   274 sec   (2263 perm/sec)   p_kst 4.804016e-01   p_cons 1.761290e-03   p_joint 3.687742e-02

Joint ci ratio: 2.525208e-02	ci left: 3.637588e-02	ci right 3.730775e-02	k: 23209	n:630000
Cons ci ratio: 1.175020e-01	ci left: 1.659850e-03	ci right 1.868584e-03	k: 1110	n:630000
KS ci ratio: 5.136694e-03	ci left: 4.791243e-01	ci right 4.815933e-01	k: 302626	n:630000
SLC16A2   630000 perm   281 sec   (2242 perm/sec)   p_kst 4.803587e-01   p_cons 1.761905e-03   p_joint 3.683968e-02

Joint ci ratio: 2.544736e-02	ci left: 3.529645e-02	ci right 3.620776e-02	k: 22880	n:640000
Cons ci ratio: 1.165099e-01	ci left: 1.662733e-03	ci right 1.869943e-03	k: 1129	n:640000
KS ci ratio: 5.095697e-03	ci left: 4.792034e-01	ci right 4.816530e-01	k: 307474	n:640000
SLC16A2   640000 perm   288 sec   (2222 perm/sec)   p_kst 4.804281e-01   p_cons 1.764063e-03   p_joint 3.575000e-02

Joint ci ratio: 2.452274e-02	ci left: 3.736060e-02	ci right 3.828967e-02	k: 24585	n:650000
Cons ci ratio: 1.154921e-01	ci left: 1.667030e-03	ci right 1.872836e-03	k: 1149	n:650000
KS ci ratio: 5.055931e-03	ci left: 4.792540e-01	ci right 4.816847e-01	k: 312305	n:650000
SLC16A2   650000 perm   295 sec   (2202 perm/sec)   p_kst 4.804692e-01   p_cons 1.767692e-03   p_joint 3.782308e-02

Joint ci ratio: 2.432625e-02	ci left: 3.739389e-02	ci right 3.831623e-02	k: 24983	n:660000
Cons ci ratio: 1.142076e-01	ci left: 1.680034e-03	ci right 1.884984e-03	k: 1175	n:660000
KS ci ratio: 5.018027e-03	ci left: 4.792091e-01	ci right 4.816213e-01	k: 317074	n:660000
SLC16A2   660000 perm   303 sec   (2181 perm/sec)   p_kst 4.804152e-01   p_cons 1.780303e-03   p_joint 3.785303e-02

Joint ci ratio: 2.398696e-02	ci left: 3.787287e-02	ci right 3.879382e-02	k: 25682	n:670000
Cons ci ratio: 1.132010e-01	ci left: 1.685411e-03	ci right 1.889084e-03	k: 1196	n:670000
KS ci ratio: 4.978609e-03	ci left: 4.794015e-01	ci right 4.817957e-01	k: 322001	n:670000
SLC16A2   670000 perm   310 sec   (2163 perm/sec)   p_kst 4.805985e-01   p_cons 1.785075e-03   p_joint 3.833134e-02

Joint ci ratio: 2.289095e-02	ci left: 4.086923e-02	ci right 4.181704e-02	k: 28112	n:680000
Cons ci ratio: 1.120365e-01	ci left: 1.696356e-03	ci right 1.899103e-03	k: 1221	n:680000
KS ci ratio: 4.941910e-03	ci left: 4.794060e-01	ci right 4.817824e-01	k: 326804	n:680000
SLC16A2   680000 perm   317 sec   (2145 perm/sec)   p_kst 4.805941e-01   p_cons 1.795588e-03   p_joint 4.134118e-02

Joint ci ratio: 2.302260e-02	ci left: 3.985736e-02	ci right 4.078709e-02	k: 27821	n:690000
Cons ci ratio: 1.114005e-01	ci left: 1.691493e-03	ci right 1.892436e-03	k: 1235	n:690000
KS ci ratio: 4.905141e-03	ci left: 4.794987e-01	ci right 4.818579e-01	k: 331668	n:690000
SLC16A2   690000 perm   325 sec   (2126 perm/sec)   p_kst 4.806783e-01   p_cons 1.789855e-03   p_joint 4.032029e-02

Joint ci ratio: 2.205251e-02	ci left: 4.271354e-02	ci right 4.366739e-02	k: 30232	n:700000
Cons ci ratio: 1.106866e-01	ci left: 1.689551e-03	ci right 1.888894e-03	k: 1251	n:700000
KS ci ratio: 4.869920e-03	ci left: 4.795132e-01	ci right 4.818555e-01	k: 336479	n:700000
SLC16A2   700000 perm   332 sec   (2108 perm/sec)   p_kst 4.806843e-01   p_cons 1.787143e-03   p_joint 4.318857e-02

Joint ci ratio: 2.185049e-02	ci left: 4.289078e-02	ci right 4.383971e-02	k: 30788	n:710000
Cons ci ratio: 1.096833e-01	ci left: 1.697257e-03	ci right 1.895576e-03	k: 1274	n:710000
KS ci ratio: 4.834547e-03	ci left: 4.796203e-01	ci right 4.819460e-01	k: 341356	n:710000
SLC16A2   710000 perm   340 sec   (2089 perm/sec)   p_kst 4.807831e-01   p_cons 1.794366e-03   p_joint 4.336338e-02

Joint ci ratio: 2.166728e-02	ci left: 4.301202e-02	ci right 4.395555e-02	k: 31307	n:720000
Cons ci ratio: 1.090439e-01	ci left: 1.693947e-03	ci right 1.890652e-03	k: 1289	n:720000
KS ci ratio: 4.801228e-03	ci left: 4.795898e-01	ci right 4.818993e-01	k: 346136	n:720000
SLC16A2   720000 perm   348 sec   (2069 perm/sec)   p_kst 4.807444e-01   p_cons 1.790278e-03   p_joint 4.348194e-02

Joint ci ratio: 2.151370e-02	ci left: 4.303320e-02	ci right 4.397042e-02	k: 31755	n:730000
Cons ci ratio: 1.083325e-01	ci left: 1.693397e-03	ci right 1.888673e-03	k: 1306	n:730000
KS ci ratio: 4.768523e-03	ci left: 4.795670e-01	ci right 4.818606e-01	k: 350921	n:730000
SLC16A2   730000 perm   356 sec   (2052 perm/sec)   p_kst 4.807137e-01   p_cons 1.789041e-03   p_joint 4.350000e-02

Joint ci ratio: 2.165244e-02	ci left: 4.195412e-02	ci right 4.287380e-02	k: 31385	n:740000
Cons ci ratio: 1.076756e-01	ci left: 1.691551e-03	ci right 1.885356e-03	k: 1322	n:740000
KS ci ratio: 4.735760e-03	ci left: 4.796205e-01	ci right 4.818986e-01	k: 355762	n:740000
SLC16A2   740000 perm   364 sec   (2032 perm/sec)   p_kst 4.807595e-01   p_cons 1.786486e-03   p_joint 4.241216e-02

Joint ci ratio: 2.139621e-02	ci left: 4.237884e-02	ci right 4.329670e-02	k: 32127	n:750000
Cons ci ratio: 1.065532e-01	ci left: 1.705330e-03	ci right 1.898550e-03	k: 1350	n:750000
KS ci ratio: 4.703210e-03	ci left: 4.797207e-01	ci right 4.819835e-01	k: 360639	n:750000
SLC16A2   750000 perm   372 sec   (2016 perm/sec)   p_kst 4.808520e-01   p_cons 1.800000e-03   p_joint 4.283600e-02

Joint ci ratio: 2.122923e-02	ci left: 4.248087e-02	ci right 4.339367e-02	k: 32631	n:760000
Cons ci ratio: 1.056573e-01	ci left: 1.712352e-03	ci right 1.904635e-03	k: 1373	n:760000
KS ci ratio: 4.671113e-03	ci left: 4.798406e-01	ci right 4.820885e-01	k: 365533	n:760000
SLC16A2   760000 perm   380 sec   (2001 perm/sec)   p_kst 4.809645e-01   p_cons 1.806579e-03   p_joint 4.293553e-02

Joint ci ratio: 2.088011e-02	ci left: 4.331295e-02	ci right 4.422815e-02	k: 33702	n:770000
Cons ci ratio: 1.050855e-01	ci left: 1.709081e-03	ci right 1.899893e-03	k: 1388	n:770000
KS ci ratio: 4.640256e-03	ci left: 4.798938e-01	ci right 4.821271e-01	k: 370378	n:770000
SLC16A2   770000 perm   388 sec   (1985 perm/sec)   p_kst 4.810104e-01   p_cons 1.802597e-03   p_joint 4.376883e-02

Joint ci ratio: 2.048022e-02	ci left: 4.440193e-02	ci right 4.532196e-02	k: 34991	n:780000
Cons ci ratio: 1.042998e-01	ci left: 1.713388e-03	ci right 1.903163e-03	k: 1409	n:780000
KS ci ratio: 4.610890e-03	ci left: 4.798496e-01	ci right 4.820685e-01	k: 375148	n:780000
SLC16A2   780000 perm   396 sec   (1970 perm/sec)   p_kst 4.809590e-01   p_cons 1.806410e-03   p_joint 4.486026e-02

Joint ci ratio: 1.991988e-02	ci left: 4.626347e-02	ci right 4.719555e-02	k: 36915	n:790000
Cons ci ratio: 1.036040e-01	ci left: 1.715125e-03	ci right 1.903748e-03	k: 1428	n:790000
KS ci ratio: 4.581830e-03	ci left: 4.798331e-01	ci right 4.820379e-01	k: 379939	n:790000
SLC16A2   790000 perm   404 sec   (1955 perm/sec)   p_kst 4.809354e-01   p_cons 1.807595e-03   p_joint 4.672785e-02

Joint ci ratio: 1.997310e-02	ci left: 4.547853e-02	ci right 4.639726e-02	k: 36749	n:800000
Cons ci ratio: 1.031005e-01	ci left: 1.710733e-03	ci right 1.897904e-03	k: 1442	n:800000
KS ci ratio: 4.553085e-03	ci left: 4.798421e-01	ci right 4.820330e-01	k: 384750	n:800000
SLC16A2   800000 perm   412 sec   (1940 perm/sec)   p_kst 4.809375e-01   p_cons 1.802500e-03   p_joint 4.593625e-02

Joint ci ratio: 2.017799e-02	ci left: 4.407039e-02	ci right 4.496991e-02	k: 36060	n:810000
Cons ci ratio: 1.021487e-01	ci left: 1.722091e-03	ci right 1.908661e-03	k: 1469	n:810000
KS ci ratio: 4.524068e-03	ci left: 4.799398e-01	ci right 4.821172e-01	k: 389633	n:810000
SLC16A2   810000 perm   422 sec   (1920 perm/sec)   p_kst 4.810284e-01   p_cons 1.813580e-03   p_joint 4.451852e-02

Joint ci ratio: 1.912602e-02	ci left: 4.826546e-02	ci right 4.919870e-02	k: 39959	n:820000
Cons ci ratio: 1.014948e-01	ci left: 1.723671e-03	ci right 1.909145e-03	k: 1488	n:820000
KS ci ratio: 4.495709e-03	ci left: 4.800229e-01	ci right 4.821870e-01	k: 394506	n:820000
SLC16A2   820000 perm   430 sec   (1905 perm/sec)   p_kst 4.811049e-01   p_cons 1.814634e-03   p_joint 4.873049e-02

Joint ci ratio: 1.914098e-02	ci left: 4.764064e-02	ci right 4.856252e-02	k: 39923	n:830000
Cons ci ratio: 1.008533e-01	ci left: 1.725216e-03	ci right 1.909614e-03	k: 1507	n:830000
KS ci ratio: 4.467359e-03	ci left: 4.801619e-01	ci right 4.823129e-01	k: 399427	n:830000
SLC16A2   830000 perm   439 sec   (1890 perm/sec)   p_kst 4.812373e-01   p_cons 1.815663e-03   p_joint 4.810000e-02

Joint ci ratio: 1.902102e-02	ci left: 4.767063e-02	ci right 4.858725e-02	k: 40427	n:840000
Cons ci ratio: 1.004217e-01	ci left: 1.719764e-03	ci right 1.902746e-03	k: 1520	n:840000
KS ci ratio: 4.440354e-03	ci left: 4.802060e-01	ci right 4.823442e-01	k: 404271	n:840000
SLC16A2   840000 perm   448 sec   (1875 perm/sec)   p_kst 4.812750e-01   p_cons 1.809524e-03   p_joint 4.812738e-02

Joint ci ratio: 1.818881e-02	ci left: 5.134151e-02	ci right 5.228508e-02	k: 44040	n:850000
Cons ci ratio: 9.993036e-02	ci left: 1.716737e-03	ci right 1.898450e-03	k: 1535	n:850000
KS ci ratio: 4.414778e-03	ci left: 4.801420e-01	ci right 4.822675e-01	k: 409024	n:850000
SLC16A2   850000 perm   457 sec   (1861 perm/sec)   p_kst 4.812047e-01   p_cons 1.805882e-03   p_joint 5.181176e-02

Outputting figure to mutsig2_images.part000000000158/SLC16A2.3_1866_850000_0.4812_0.0018059_0.051812.png
                gene_name: SLC16A2
               theta_stop: 0.100 
                    nperm: 850000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.0018 
      ci_cons_bounds_left: 0.0017 
     ci_cons_bounds_right: 0.0019 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.052 

Current progress: 74 percent done.
SLC17A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.292450e-02	ci left: 5.765733e-01	ci right 5.959764e-01	k: 5863	n:10000
KS ci ratio: 3.428683e-02	ci left: 5.567190e-01	ci right 5.762422e-01	k: 5665	n:10000
SLC17A4   10000 perm   2 sec   (5867 perm/sec)   p_kst 5.665000e-01   p_cons 5.863000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC17A4.3_1538_10000_0.5665_0.5863_1.png
                gene_name: SLC17A4
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
SLC17A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.576934e-02	ci left: 5.357789e-01	ci right 5.553945e-01	k: 5456	n:10000
Cons ci ratio: 7.660662e-02	ci left: 1.994895e-01	ci right 2.154812e-01	k: 2074	n:10000
KS ci ratio: 2.953145e-02	ci left: 6.283912e-01	ci right 6.473284e-01	k: 6379	n:10000
SLC17A5   10000 perm   2 sec   (4682 perm/sec)   p_kst 6.379000e-01   p_cons 2.074000e-01   p_joint 5.456000e-01

Outputting figure to mutsig2_images.part000000000158/SLC17A5.3_1532_10000_0.6379_0.2074_0.5456.png
                gene_name: SLC17A5
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 77 percent done.
SIRT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.958260e-02	ci left: 6.275869e-01	ci right 6.465332e-01	k: 6371	n:10000
KS ci ratio: 2.865516e-02	ci left: 6.422690e-01	ci right 6.610426e-01	k: 6517	n:10000
SIRT2   10000 perm   2 sec   (6044 perm/sec)   p_kst 6.517000e-01   p_cons 6.371000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SIRT2.2_1234_10000_0.6517_0.6371_1.png
                gene_name: SIRT2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
SIX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.253245e-02	ci left: 5.823922e-01	ci right 6.017541e-01	k: 5921	n:10000
Cons ci ratio: 3.585304e-03	ci left: 9.898317e-01	ci right 9.934731e-01	k: 9918	n:10000
KS ci ratio: 5.385802e-02	ci left: 3.368712e-01	ci right 3.556184e-01	k: 3462	n:10000
SIX1   10000 perm   2 sec   (6657 perm/sec)   p_kst 3.462000e-01   p_cons 9.918000e-01   p_joint 5.921000e-01

Outputting figure to mutsig2_images.part000000000158/SIX1.2_863_10000_0.3462_0.9918_0.5921.png
                gene_name: SIX1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 80 percent done.
SIX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.685829e-02	ci left: 6.712594e-01	ci right 6.896353e-01	k: 6805	n:10000
Cons ci ratio: 4.484027e-02	ci left: 4.233590e-01	ci right 4.428800e-01	k: 4331	n:10000
KS ci ratio: 4.118018e-02	ci left: 4.654705e-01	ci right 4.851439e-01	k: 4753	n:10000
SIX2   10000 perm   2 sec   (6487 perm/sec)   p_kst 4.753000e-01   p_cons 4.331000e-01   p_joint 6.805000e-01

Outputting figure to mutsig2_images.part000000000158/SIX2.2_884_10000_0.4753_0.4331_0.6805.png
                gene_name: SIX2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 82 percent done.
SIX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.483577e-03	ci left: 9.946724e-01	ci right 9.972253e-01	k: 9961	n:10000
Cons ci ratio: 1.797425e-02	ci left: 8.187299e-01	ci right 8.336795e-01	k: 8263	n:10000
KS ci ratio: 6.288299e-03	ci left: 9.717481e-01	ci right 9.779710e-01	k: 9750	n:10000
SIX3   10000 perm   2 sec   (6431 perm/sec)   p_kst 9.750000e-01   p_cons 8.263000e-01   p_joint 9.961000e-01

Outputting figure to mutsig2_images.part000000000158/SIX3.2_1007_10000_0.975_0.8263_0.9961.png
                gene_name: SIX3
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1.00 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 1.00 

Current progress: 84 percent done.
SIX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.886859e-02	ci left: 2.362004e-01	ci right 2.531486e-01	k: 2446	n:10000
Cons ci ratio: 3.118942e-02	ci left: 6.026690e-01	ci right 6.218656e-01	k: 6123	n:10000
KS ci ratio: 1.537925e-01	ci left: 5.629122e-02	ci right 6.576649e-02	k: 609	n:10000
SIX5   10000 perm   2 sec   (5105 perm/sec)   p_kst 6.090000e-02   p_cons 6.123000e-01   p_joint 2.446000e-01

Joint ci ratio: 3.057653e-02	ci left: 4.441363e-01	ci right 4.579779e-01	k: 9021	n:20000
Cons ci ratio: 2.191396e-02	ci left: 6.085660e-01	ci right 6.221004e-01	k: 12307	n:20000
KS ci ratio: 1.087501e-01	ci left: 5.767339e-02	ci right 6.435494e-02	k: 1219	n:20000
SIX5   20000 perm   5 sec   (4234 perm/sec)   p_kst 6.095000e-02   p_cons 6.153500e-01   p_joint 4.510500e-01

Joint ci ratio: 3.146469e-02	ci left: 3.355683e-01	ci right 3.463292e-01	k: 10228	n:30000
Cons ci ratio: 1.781559e-02	ci left: 6.118724e-01	ci right 6.229048e-01	k: 18522	n:30000
KS ci ratio: 8.944716e-02	ci left: 5.746920e-02	ci right 6.288303e-02	k: 1804	n:30000
SIX5   30000 perm   8 sec   (3821 perm/sec)   p_kst 6.013333e-02   p_cons 6.174000e-01   p_joint 3.409333e-01

Outputting figure to mutsig2_images.part000000000158/SIX5.2_2232_30000_0.060133_0.6174_0.34093.png
                gene_name: SIX5
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 85 percent done.
SKA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.656929e-01	ci left: 4.859368e-02	ci right 5.746898e-02	k: 529	n:10000
Cons ci ratio: 1.019010e-01	ci left: 1.222933e-01	ci right 1.355237e-01	k: 1288	n:10000
KS ci ratio: 1.183862e-01	ci left: 9.292171e-02	ci right 1.047132e-01	k: 987	n:10000
SKA3   10000 perm   2 sec   (5916 perm/sec)   p_kst 9.870000e-02   p_cons 1.288000e-01   p_joint 5.290000e-02

Joint ci ratio: 7.249256e-02	ci left: 1.229069e-01	ci right 1.322016e-01	k: 2550	n:20000
Cons ci ratio: 7.199204e-02	ci left: 1.244328e-01	ci right 1.337753e-01	k: 2581	n:20000
KS ci ratio: 8.308492e-02	ci left: 9.597378e-02	ci right 1.043429e-01	k: 2002	n:20000
SKA3   20000 perm   4 sec   (4666 perm/sec)   p_kst 1.001000e-01   p_cons 1.290500e-01   p_joint 1.275000e-01

Outputting figure to mutsig2_images.part000000000158/SKA3.2_1322_20000_0.1001_0.12905_0.1275.png
                gene_name: SKA3
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 87 percent done.
SLAMF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.703560e-03	ci left: 9.833923e-01	ci right 9.881185e-01	k: 9859	n:10000
Cons ci ratio: 4.914966e-02	ci left: 3.791296e-01	ci right 3.983352e-01	k: 3887	n:10000
KS ci ratio: 3.393222e-02	ci left: 5.618315e-01	ci right 5.813268e-01	k: 5716	n:10000
SLAMF7   10000 perm   2 sec   (6279 perm/sec)   p_kst 5.716000e-01   p_cons 3.887000e-01   p_joint 9.859000e-01

Outputting figure to mutsig2_images.part000000000158/SLAMF7.2_1036_10000_0.5716_0.3887_0.9859.png
                gene_name: SLAMF7
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 89 percent done.
SLAMF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.514628e-02	ci left: 5.444935e-01	ci right 5.640749e-01	k: 5543	n:10000
KS ci ratio: 3.469341e-02	ci left: 5.509062e-01	ci right 5.704585e-01	k: 5607	n:10000
SLAMF9   10000 perm   2 sec   (6624 perm/sec)   p_kst 5.607000e-01   p_cons 5.543000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLAMF9.2_886_10000_0.5607_0.5543_1.png
                gene_name: SLAMF9
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
SLC10A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.169206e-03	ci left: 9.436740e-01	ci right 9.524627e-01	k: 9482	n:10000
KS ci ratio: 3.817613e-03	ci left: 9.886188e-01	ci right 9.924873e-01	k: 9907	n:10000
SLC10A1   10000 perm   2 sec   (6330 perm/sec)   p_kst 9.907000e-01   p_cons 9.482000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC10A1.2_1070_10000_0.9907_0.9482_1.png
                gene_name: SLC10A1
               theta_stop: 0.0092 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
SLC10A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.041386e-01	ci left: 1.176005e-01	ci right 1.306194e-01	k: 1240	n:10000
Cons ci ratio: 2.847290e-01	ci left: 1.594989e-02	ci right 2.133572e-02	k: 185	n:10000
KS ci ratio: 1.748396e-02	ci left: 8.266621e-01	ci right 8.413428e-01	k: 8341	n:10000
SLC10A6   10000 perm   2 sec   (6536 perm/sec)   p_kst 8.341000e-01   p_cons 1.850000e-02   p_joint 1.240000e-01

Joint ci ratio: 6.615107e-02	ci left: 1.443871e-01	ci right 1.543151e-01	k: 2986	n:20000
Cons ci ratio: 2.047293e-01	ci left: 1.615527e-02	ci right 1.988674e-02	k: 359	n:20000
KS ci ratio: 1.240710e-02	ci left: 8.278588e-01	ci right 8.382442e-01	k: 16662	n:20000
SLC10A6   20000 perm   4 sec   (5513 perm/sec)   p_kst 8.331000e-01   p_cons 1.795000e-02   p_joint 1.493000e-01

Joint ci ratio: 4.072805e-02	ci left: 2.311048e-01	ci right 2.407464e-01	k: 7077	n:30000
Cons ci ratio: 1.648458e-01	ci left: 1.697330e-02	ci right 2.005429e-02	k: 554	n:30000
KS ci ratio: 1.014234e-02	ci left: 8.284949e-01	ci right 8.369739e-01	k: 24983	n:30000
SLC10A6   30000 perm   6 sec   (5048 perm/sec)   p_kst 8.327667e-01   p_cons 1.846667e-02   p_joint 2.359000e-01

Joint ci ratio: 5.079362e-02	ci left: 1.262983e-01	ci right 1.329055e-01	k: 5183	n:40000
Cons ci ratio: 1.441568e-01	ci left: 1.684024e-02	ci right 1.948037e-02	k: 725	n:40000
KS ci ratio: 8.793440e-03	ci left: 8.287535e-01	ci right 8.360982e-01	k: 33298	n:40000
SLC10A6   40000 perm   8 sec   (4823 perm/sec)   p_kst 8.324500e-01   p_cons 1.812500e-02   p_joint 1.295750e-01

Joint ci ratio: 4.681070e-02	ci left: 1.201133e-01	ci right 1.258905e-01	k: 6149	n:50000
Cons ci ratio: 1.276195e-01	ci left: 1.733690e-02	ci right 1.971947e-02	k: 925	n:50000
KS ci ratio: 7.838824e-03	ci left: 8.300844e-01	ci right 8.366368e-01	k: 41669	n:50000
SLC10A6   50000 perm   11 sec   (4726 perm/sec)   p_kst 8.333800e-01   p_cons 1.850000e-02   p_joint 1.229800e-01

Joint ci ratio: 4.266300e-02	ci left: 1.207122e-01	ci right 1.259910e-01	k: 7400	n:60000
Cons ci ratio: 1.165110e-01	ci left: 1.743679e-02	ci right 1.961013e-02	k: 1110	n:60000
KS ci ratio: 7.157874e-03	ci left: 8.302933e-01	ci right 8.362744e-01	k: 49998	n:60000
SLC10A6   60000 perm   13 sec   (4659 perm/sec)   p_kst 8.333000e-01   p_cons 1.850000e-02   p_joint 1.233333e-01

Joint ci ratio: 3.940076e-02	ci left: 1.214395e-01	ci right 1.263346e-01	k: 8671	n:70000
Cons ci ratio: 1.080029e-01	ci left: 1.747290e-02	ci right 1.948158e-02	k: 1292	n:70000
KS ci ratio: 6.633022e-03	ci left: 8.302592e-01	ci right 8.357989e-01	k: 58313	n:70000
SLC10A6   70000 perm   16 sec   (4261 perm/sec)   p_kst 8.330429e-01   p_cons 1.845714e-02   p_joint 1.238714e-01

Joint ci ratio: 3.611907e-02	ci left: 1.260147e-01	ci right 1.306623e-01	k: 10266	n:80000
Cons ci ratio: 1.013324e-01	ci left: 1.743121e-02	ci right 1.930395e-02	k: 1468	n:80000
KS ci ratio: 6.223682e-03	ci left: 8.295797e-01	ci right 8.347712e-01	k: 66575	n:80000
SLC10A6   80000 perm   19 sec   (4157 perm/sec)   p_kst 8.321875e-01   p_cons 1.835000e-02   p_joint 1.283250e-01

Joint ci ratio: 3.483337e-02	ci left: 1.212027e-01	ci right 1.255105e-01	k: 11101	n:90000
Cons ci ratio: 9.532068e-02	ci left: 1.756453e-02	ci right 1.933337e-02	k: 1659	n:90000
KS ci ratio: 5.892665e-03	ci left: 8.285355e-01	ci right 8.334432e-01	k: 74790	n:90000
SLC10A6   90000 perm   22 sec   (4017 perm/sec)   p_kst 8.310000e-01   p_cons 1.843333e-02   p_joint 1.233444e-01

Outputting figure to mutsig2_images.part000000000158/SLC10A6.2_1158_90000_0.831_0.018433_0.12334.png
                gene_name: SLC10A6
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 93 percent done.
SLC10A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.013503e-02	ci left: 6.189430e-01	ci right 6.379821e-01	k: 6285	n:10000
Cons ci ratio: 4.409049e-02	ci left: 4.316360e-01	ci right 4.511982e-01	k: 4414	n:10000
KS ci ratio: 4.010601e-02	ci left: 4.786573e-01	ci right 4.983494e-01	k: 4885	n:10000
SLC10A7   10000 perm   2 sec   (5306 perm/sec)   p_kst 4.885000e-01   p_cons 4.414000e-01   p_joint 6.285000e-01

Outputting figure to mutsig2_images.part000000000158/SLC10A7.2_1116_10000_0.4885_0.4414_0.6285.png
                gene_name: SLC10A7
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 95 percent done.
SLC16A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.828014e-02	ci left: 8.137498e-01	ci right 8.288626e-01	k: 8214	n:10000
Cons ci ratio: 3.308081e-02	ci left: 5.742662e-01	ci right 5.936849e-01	k: 5840	n:10000
KS ci ratio: 2.611998e-02	ci left: 6.833505e-01	ci right 7.015373e-01	k: 6925	n:10000
SLC16A4   10000 perm   2 sec   (6127 perm/sec)   p_kst 6.925000e-01   p_cons 5.840000e-01   p_joint 8.214000e-01

Outputting figure to mutsig2_images.part000000000158/SLC16A4.2_1496_10000_0.6925_0.584_0.8214.png
                gene_name: SLC16A4
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 97 percent done.
SLC16A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.058573e-02	ci left: 9.269922e-01	ci right 9.369544e-01	k: 9321	n:10000
KS ci ratio: 4.862636e-02	ci left: 3.842059e-01	ci right 4.034560e-01	k: 3938	n:10000
SLC16A6   10000 perm   2 sec   (5152 perm/sec)   p_kst 3.938000e-01   p_cons 9.321000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000158/SLC16A6.2_1592_10000_0.3938_0.9321_1.png
                gene_name: SLC16A6
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
SLC17A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.005790e-02	ci left: 4.792569e-01	ci right 4.989495e-01	k: 4891	n:10000
Cons ci ratio: 6.052633e-02	ci left: 2.864688e-01	ci right 3.044505e-01	k: 2954	n:10000
KS ci ratio: 6.164979e-02	ci left: 2.789393e-01	ci right 2.967844e-01	k: 2878	n:10000
SLC17A6   10000 perm   2 sec   (4950 perm/sec)   p_kst 2.878000e-01   p_cons 2.954000e-01   p_joint 4.891000e-01

Outputting figure to mutsig2_images.part000000000158/SLC17A6.2_1797_10000_0.2878_0.2954_0.4891.png
                gene_name: SLC17A6
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000158
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 158 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1554>
Subject: Job 9894136: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1554>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000159> was used as the working directory.
Started at Sat Oct  6 00:29:43 2012
Results reported at Sat Oct  6 00:52:37 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000159.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000159.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 159  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000159.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1550.85 sec.
    Max Memory :      3599 MB
    Max Swap   :      5926 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
159
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 159
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 159: processing genes 14245 - 14334
Calculating significance of each gene.
Using projection method.
14245	SLC17A9	7.184875e-02
14246	SLC18A1	6.241347e-01
14247	SLC18A2	1.690314e-01
14248	SLC18A3	1.307946e-01
14249	SLC19A1	9.462062e-01
14250	SLC19A2	1.856508e-01
14251	SLC19A3	3.112473e-01
14252	SLC1A1	5.355459e-01
14253	SLC1A2	1.248743e-01
14254	SLC1A3	6.352042e-02
14255	SLC1A4	9.300037e-01
14256	SLC1A5	5.221374e-01
14257	SLC1A6	3.565029e-02
14258	SLC1A7	6.967739e-01
14259	SLC20A1	3.269573e-01
14260	SLC20A2	9.033593e-01
14261	SLC22A1	4.427744e-01
14262	SLC22A10	2.054697e-01
14263	SLC22A11	4.634232e-01
14264	SLC22A12	9.315025e-01
14265	SLC22A13	6.118240e-01
14266	SLC22A14	5.135233e-01
14267	SLC22A15	2.280588e-01
14268	SLC22A16	1.515416e-01
14269	SLC22A17	5.624562e-01
14270	SLC22A18	6.326992e-01
14271	SLC22A2	9.586530e-01
14272	SLC22A20	7.185469e-01
14273	SLC22A23	4.116447e-01
14274	SLC22A25	2.186577e-01
14275	SLC22A3	6.420631e-01
14276	SLC22A4	5.882530e-01
14277	SLC22A5	8.004598e-01
14278	SLC22A6	2.991040e-01
14279	SLC22A7	2.581475e-01
14280	SLC22A8	1.324835e-01
14281	SLC22A9	7.296922e-01
14282	SLC23A1	7.626488e-01
14283	SLC23A2	7.507202e-02
14284	SLC23A3	6.958844e-01
14285	SLC24A1	9.270503e-01
14286	SLC24A2	9.826291e-03
14287	SLC24A3	1.796297e-01
14288	SLC24A4	7.892359e-01
14289	SLC24A5	7.714402e-02
14290	SLC24A6	8.371733e-01
14291	SLC25A1	1
14292	SLC25A10	1
14293	SLC25A11	7.310795e-01
14294	SLC25A12	2.907295e-02
14295	SLC25A13	1.643050e-02
14296	SLC25A14	4.778753e-02
14297	SLC25A15	2.760960e-01
14298	SLC25A16	4.187589e-01
14299	SLC25A17	3.340431e-01
14300	SLC25A18	9.817989e-02
14301	SLC25A19	7.015895e-01
14302	SLC25A2	7.890895e-01
14303	SLC25A20	6.324988e-01
14304	SLC25A21	5.892403e-01
14305	SLC25A22	1
14306	SLC25A23	8.500402e-01
14307	SLC25A24	3.439115e-02
14308	SLC25A25	6.243977e-01
14309	SLC25A26	1
14310	SLC25A27	1
14311	SLC25A28	7.364738e-02
14312	SLC25A29	1
14313	SLC25A3	4.927386e-01
14314	SLC25A30	5.725349e-01
14315	SLC25A31	2.699697e-01
14316	SLC25A32	8.767167e-01
14317	SLC25A33	1
14318	SLC25A34	6.805305e-01
14319	SLC25A35	6.135520e-01
14320	SLC25A36	3.047464e-01
14321	SLC25A37	8.862631e-01
14322	SLC25A38	1
14323	SLC25A39	1
14324	SLC25A4	7.498585e-01
14325	SLC25A40	1.861945e-01
14326	SLC25A41	1
14327	SLC25A42	7.118399e-01
14328	SLC25A43	4.172973e-02
14329	SLC25A44	2.339402e-01
14330	SLC25A45	7.393690e-01
14331	SLC25A46	7.657264e-01
14332	SLC25A5	7.757747e-01
14333	SLC26A1	1
14334	SLC26A10	8.216510e-01
Done

Running MutSig 2:
Scatter job 159: processing genes 14245 - 14334
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SLC25A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.123144e-02	ci left: 9.188379e-01	ci right 9.293135e-01	k: 9242	n:10000
KS ci ratio: 1.448544e-02	ci left: 8.733677e-01	ci right 8.862101e-01	k: 8799	n:10000
SLC25A12   10000 perm   2 sec   (5043 perm/sec)   p_kst 8.799000e-01   p_cons 9.242000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC25A12.8_2109_10000_0.8799_0.9242_1.png
                gene_name: SLC25A12
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
SLC25A13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.509198e-01	ci left: 5.814929e-03	ci right 9.281233e-03	k: 74	n:10000
Cons ci ratio: 3.319667e-02	ci left: 5.725610e-01	ci right 5.919910e-01	k: 5823	n:10000
KS ci ratio: 8.756181e-01	ci left: 1.144300e-03	ci right 2.965502e-03	k: 19	n:10000
SLC25A13   10000 perm   2 sec   (4733 perm/sec)   p_kst 1.900000e-03   p_cons 5.823000e-01   p_joint 7.400000e-03

Joint ci ratio: 3.797244e-01	ci left: 4.295928e-03	ci right 6.351929e-03	k: 105	n:20000
Cons ci ratio: 2.368548e-02	ci left: 5.710693e-01	ci right 5.848080e-01	k: 11559	n:20000
KS ci ratio: 7.682562e-01	ci left: 8.090923e-04	ci right 1.844697e-03	k: 25	n:20000
SLC25A13   20000 perm   5 sec   (4260 perm/sec)   p_kst 1.250000e-03   p_cons 5.779500e-01   p_joint 5.250000e-03

Joint ci ratio: 2.214841e-01	ci left: 9.188445e-03	ci right 1.150785e-02	k: 309	n:30000
Cons ci ratio: 1.913609e-02	ci left: 5.774963e-01	ci right 5.886876e-01	k: 17493	n:30000
KS ci ratio: 5.973559e-01	ci left: 1.009177e-03	ci right 1.891927e-03	k: 42	n:30000
SLC25A13   30000 perm   7 sec   (4086 perm/sec)   p_kst 1.400000e-03   p_cons 5.831000e-01   p_joint 1.030000e-02

Joint ci ratio: 2.600136e-01	ci left: 4.915659e-03	ci right 6.407485e-03	k: 225	n:40000
Cons ci ratio: 1.655205e-02	ci left: 5.788508e-01	ci right 5.885370e-01	k: 23348	n:40000
KS ci ratio: 5.099577e-01	ci left: 1.101224e-03	ci right 1.874063e-03	k: 58	n:40000
SLC25A13   40000 perm   10 sec   (3994 perm/sec)   p_kst 1.450000e-03   p_cons 5.837000e-01   p_joint 5.625000e-03

Joint ci ratio: 2.567603e-01	ci left: 4.044513e-03	ci right 5.254105e-03	k: 231	n:50000
Cons ci ratio: 1.481018e-02	ci left: 5.791842e-01	ci right 5.878461e-01	k: 29176	n:50000
KS ci ratio: 4.821953e-01	ci left: 1.003451e-03	ci right 1.656661e-03	k: 65	n:50000
SLC25A13   50000 perm   13 sec   (3925 perm/sec)   p_kst 1.300000e-03   p_cons 5.835200e-01   p_joint 4.620000e-03

Joint ci ratio: 2.706772e-01	ci left: 3.012190e-03	ci right 3.970161e-03	k: 208	n:60000
Cons ci ratio: 1.349213e-02	ci left: 5.805611e-01	ci right 5.884640e-01	k: 35071	n:60000
KS ci ratio: 4.379734e-01	ci left: 1.042552e-03	ci right 1.640693e-03	k: 79	n:60000
SLC25A13   60000 perm   16 sec   (3857 perm/sec)   p_kst 1.316667e-03   p_cons 5.845167e-01   p_joint 3.466667e-03

Joint ci ratio: 2.531287e-01	ci left: 2.982334e-03	ci right 3.859626e-03	k: 238	n:70000
Cons ci ratio: 1.251417e-02	ci left: 5.799662e-01	ci right 5.872840e-01	k: 40854	n:70000
KS ci ratio: 3.936933e-01	ci left: 1.136729e-03	ci right 1.705890e-03	k: 98	n:70000
SLC25A13   70000 perm   18 sec   (3785 perm/sec)   p_kst 1.400000e-03   p_cons 5.836286e-01   p_joint 3.400000e-03

Joint ci ratio: 2.351204e-01	ci left: 3.055533e-03	ci right 3.881122e-03	k: 276	n:80000
Cons ci ratio: 1.171900e-02	ci left: 5.796617e-01	ci right 5.865073e-01	k: 46647	n:80000
KS ci ratio: 3.560918e-01	ci left: 1.243801e-03	ci right 1.793369e-03	k: 120	n:80000
SLC25A13   80000 perm   21 sec   (3727 perm/sec)   p_kst 1.500000e-03   p_cons 5.830875e-01   p_joint 3.450000e-03

Joint ci ratio: 2.310198e-01	ci left: 2.820612e-03	ci right 3.567533e-03	k: 286	n:90000
Cons ci ratio: 1.108238e-02	ci left: 5.783802e-01	ci right 5.848368e-01	k: 52345	n:90000
KS ci ratio: 3.346513e-01	ci left: 1.267975e-03	ci right 1.787228e-03	k: 136	n:90000
SLC25A13   90000 perm   25 sec   (3665 perm/sec)   p_kst 1.511111e-03   p_cons 5.816111e-01   p_joint 3.177778e-03

Joint ci ratio: 1.873233e-01	ci left: 3.951539e-03	ci right 4.777615e-03	k: 435	n:100000
Cons ci ratio: 1.049363e-02	ci left: 5.794762e-01	ci right 5.855990e-01	k: 58254	n:100000
KS ci ratio: 3.156377e-01	ci left: 1.297316e-03	ci right 1.792318e-03	k: 153	n:100000
SLC25A13   100000 perm   28 sec   (3610 perm/sec)   p_kst 1.530000e-03   p_cons 5.825400e-01   p_joint 4.350000e-03

Joint ci ratio: 1.920610e-01	ci left: 3.410371e-03	ci right 4.143448e-03	k: 414	n:110000
Cons ci ratio: 1.002221e-02	ci left: 5.787965e-01	ci right 5.846356e-01	k: 63989	n:110000
KS ci ratio: 3.087117e-01	ci left: 1.238024e-03	ci right 1.697996e-03	k: 160	n:110000
SLC25A13   110000 perm   31 sec   (3555 perm/sec)   p_kst 1.454545e-03   p_cons 5.817182e-01   p_joint 3.763636e-03

Joint ci ratio: 1.561396e-01	ci left: 4.816910e-03	ci right 5.640613e-03	k: 626	n:120000
Cons ci ratio: 9.597377e-03	ci left: 5.788279e-01	ci right 5.844182e-01	k: 69795	n:120000
KS ci ratio: 2.952631e-01	ci left: 1.250390e-03	ci right 1.690934e-03	k: 175	n:120000
SLC25A13   120000 perm   34 sec   (3504 perm/sec)   p_kst 1.458333e-03   p_cons 5.816250e-01   p_joint 5.216667e-03

Joint ci ratio: 1.681823e-01	ci left: 3.811478e-03	ci right 4.518613e-03	k: 540	n:130000
Cons ci ratio: 9.222508e-03	ci left: 5.788512e-01	ci right 5.842221e-01	k: 75600	n:130000
KS ci ratio: 2.856875e-01	ci left: 1.239790e-03	ci right 1.659877e-03	k: 187	n:130000
SLC25A13   130000 perm   38 sec   (3437 perm/sec)   p_kst 1.438462e-03   p_cons 5.815385e-01   p_joint 4.153846e-03

Joint ci ratio: 1.611801e-01	ci left: 3.867970e-03	ci right 4.552815e-03	k: 588	n:140000
Cons ci ratio: 8.892305e-03	ci left: 5.786605e-01	ci right 5.838362e-01	k: 81375	n:140000
KS ci ratio: 2.776829e-01	ci left: 1.224254e-03	ci right 1.625423e-03	k: 198	n:140000
SLC25A13   140000 perm   42 sec   (3369 perm/sec)   p_kst 1.414286e-03   p_cons 5.812500e-01   p_joint 4.200000e-03

Joint ci ratio: 1.657865e-01	ci left: 3.405430e-03	ci right 4.027329e-03	k: 556	n:150000
Cons ci ratio: 8.590258e-03	ci left: 5.787785e-01	ci right 5.837784e-01	k: 87192	n:150000
KS ci ratio: 2.677736e-01	ci left: 1.235802e-03	ci right 1.623880e-03	k: 213	n:150000
SLC25A13   150000 perm   45 sec   (3318 perm/sec)   p_kst 1.420000e-03   p_cons 5.812800e-01   p_joint 3.706667e-03

Joint ci ratio: 1.600004e-01	ci left: 3.438401e-03	ci right 4.042301e-03	k: 597	n:160000
Cons ci ratio: 8.315222e-03	ci left: 5.789907e-01	ci right 5.838314e-01	k: 93026	n:160000
KS ci ratio: 2.582905e-01	ci left: 1.251974e-03	ci right 1.628963e-03	k: 229	n:160000
SLC25A13   160000 perm   49 sec   (3268 perm/sec)   p_kst 1.431250e-03   p_cons 5.814125e-01   p_joint 3.731250e-03

Joint ci ratio: 1.547806e-01	ci left: 3.467825e-03	ci right 4.055180e-03	k: 638	n:170000
Cons ci ratio: 8.072914e-03	ci left: 5.787033e-01	ci right 5.833999e-01	k: 98779	n:170000
KS ci ratio: 2.497484e-01	ci left: 1.266457e-03	ci right 1.633236e-03	k: 245	n:170000
SLC25A13   170000 perm   53 sec   (3220 perm/sec)   p_kst 1.441176e-03   p_cons 5.810529e-01   p_joint 3.752941e-03

Joint ci ratio: 1.309991e-01	ci left: 4.625624e-03	ci right 5.279365e-03	k: 890	n:180000
Cons ci ratio: 7.840322e-03	ci left: 5.790891e-01	ci right 5.836527e-01	k: 104647	n:180000
KS ci ratio: 2.415402e-01	ci left: 1.284732e-03	ci right 1.642744e-03	k: 262	n:180000
SLC25A13   180000 perm   57 sec   (3175 perm/sec)   p_kst 1.455556e-03   p_cons 5.813722e-01   p_joint 4.944444e-03

Joint ci ratio: 1.285046e-01	ci left: 4.560391e-03	ci right 5.191703e-03	k: 925	n:190000
Cons ci ratio: 7.630693e-03	ci left: 5.791832e-01	ci right 5.836249e-01	k: 110467	n:190000
KS ci ratio: 2.362131e-01	ci left: 1.276492e-03	ci right 1.623215e-03	k: 274	n:190000
SLC25A13   190000 perm   61 sec   (3126 perm/sec)   p_kst 1.442105e-03   p_cons 5.814053e-01   p_joint 4.868421e-03

Joint ci ratio: 1.293651e-01	ci left: 4.274266e-03	ci right 4.870233e-03	k: 913	n:200000
Cons ci ratio: 7.438938e-03	ci left: 5.791442e-01	ci right 5.834734e-01	k: 116262	n:200000
KS ci ratio: 2.304210e-01	ci left: 1.278577e-03	ci right 1.616138e-03	k: 288	n:200000
SLC25A13   200000 perm   65 sec   (3086 perm/sec)   p_kst 1.440000e-03   p_cons 5.813100e-01   p_joint 4.565000e-03

Joint ci ratio: 1.478087e-01	ci left: 3.091309e-03	ci right 3.589222e-03	k: 700	n:210000
Cons ci ratio: 7.533567e-03	ci left: 5.610564e-01	ci right 5.653038e-01	k: 118268	n:210000
KS ci ratio: 2.246641e-01	ci left: 1.285050e-03	ci right 1.614672e-03	k: 303	n:210000
SLC25A13   210000 perm   69 sec   (3047 perm/sec)   p_kst 1.442857e-03   p_cons 5.631810e-01   p_joint 3.333333e-03

Joint ci ratio: 1.277875e-01	ci left: 3.986841e-03	ci right 4.535437e-03	k: 936	n:220000
Cons ci ratio: 7.362796e-03	ci left: 5.609424e-01	ci right 5.650923e-01	k: 123864	n:220000
KS ci ratio: 2.210600e-01	ci left: 1.269555e-03	ci right 1.589267e-03	k: 313	n:220000
SLC25A13   220000 perm   73 sec   (3007 perm/sec)   p_kst 1.422727e-03   p_cons 5.630182e-01   p_joint 4.254545e-03

Joint ci ratio: 1.248246e-01	ci left: 4.002973e-03	ci right 4.540073e-03	k: 981	n:230000
Cons ci ratio: 7.203324e-03	ci left: 5.608264e-01	ci right 5.648851e-01	k: 129457	n:230000
KS ci ratio: 2.162909e-01	ci left: 1.271893e-03	ci right 1.584366e-03	k: 327	n:230000
SLC25A13   230000 perm   77 sec   (2971 perm/sec)   p_kst 1.421739e-03   p_cons 5.628565e-01   p_joint 4.265217e-03

Joint ci ratio: 1.314514e-01	ci left: 3.448930e-03	ci right 3.938176e-03	k: 885	n:240000
Cons ci ratio: 7.054142e-03	ci left: 5.606959e-01	ci right 5.646692e-01	k: 135044	n:240000
KS ci ratio: 2.133856e-01	ci left: 1.254379e-03	ci right 1.557867e-03	k: 336	n:240000
SLC25A13   240000 perm   82 sec   (2932 perm/sec)   p_kst 1.400000e-03   p_cons 5.626833e-01   p_joint 3.687500e-03

Joint ci ratio: 1.328989e-01	ci left: 3.237462e-03	ci right 3.702166e-03	k: 866	n:250000
Cons ci ratio: 6.912117e-03	ci left: 5.607008e-01	ci right 5.645938e-01	k: 140662	n:250000
KS ci ratio: 2.099873e-01	ci left: 1.245871e-03	ci right 1.541883e-03	k: 347	n:250000
SLC25A13   250000 perm   86 sec   (2895 perm/sec)   p_kst 1.388000e-03   p_cons 5.626480e-01   p_joint 3.464000e-03

Joint ci ratio: 1.171425e-01	ci left: 4.037167e-03	ci right 4.543212e-03	k: 1114	n:260000
Cons ci ratio: 6.780087e-03	ci left: 5.605790e-01	ci right 5.643965e-01	k: 146247	n:260000
KS ci ratio: 2.067464e-01	ci left: 1.238052e-03	ci right 1.527093e-03	k: 358	n:260000
SLC25A13   260000 perm   91 sec   (2858 perm/sec)   p_kst 1.376923e-03   p_cons 5.624885e-01   p_joint 4.284615e-03

Joint ci ratio: 1.148972e-01	ci left: 4.045877e-03	ci right 4.542634e-03	k: 1158	n:270000
Cons ci ratio: 6.654943e-03	ci left: 5.604966e-01	ci right 5.642428e-01	k: 151840	n:270000
KS ci ratio: 2.028293e-01	ci left: 1.241392e-03	ci right 1.525040e-03	k: 372	n:270000
SLC25A13   270000 perm   96 sec   (2824 perm/sec)   p_kst 1.377778e-03   p_cons 5.623704e-01   p_joint 4.288889e-03

Joint ci ratio: 1.196646e-01	ci left: 3.589328e-03	ci right 4.049608e-03	k: 1068	n:280000
Cons ci ratio: 6.537050e-03	ci left: 5.603778e-01	ci right 5.640566e-01	k: 157421	n:280000
KS ci ratio: 1.968477e-01	ci left: 1.275092e-03	ci right 1.556819e-03	k: 395	n:280000
SLC25A13   280000 perm   100 sec   (2790 perm/sec)   p_kst 1.410714e-03   p_cons 5.622179e-01   p_joint 3.814286e-03

Joint ci ratio: 1.183465e-01	ci left: 3.545848e-03	ci right 3.995193e-03	k: 1092	n:290000
Cons ci ratio: 6.426018e-03	ci left: 5.602057e-01	ci right 5.638206e-01	k: 162984	n:290000
KS ci ratio: 1.936945e-01	ci left: 1.273759e-03	ci right 1.550152e-03	k: 408	n:290000
SLC25A13   290000 perm   105 sec   (2757 perm/sec)   p_kst 1.406897e-03   p_cons 5.620138e-01   p_joint 3.765517e-03

Joint ci ratio: 1.175471e-01	ci left: 3.476171e-03	ci right 3.913503e-03	k: 1107	n:300000
Cons ci ratio: 6.317546e-03	ci left: 5.602724e-01	ci right 5.638264e-01	k: 168615	n:300000
KS ci ratio: 1.913704e-01	ci left: 1.263026e-03	ci right 1.533419e-03	k: 418	n:300000
SLC25A13   300000 perm   110 sec   (2725 perm/sec)   p_kst 1.393333e-03   p_cons 5.620500e-01   p_joint 3.690000e-03

Joint ci ratio: 1.220584e-01	ci left: 3.113667e-03	ci right 3.521512e-03	k: 1027	n:310000
Cons ci ratio: 6.218217e-03	ci left: 5.600318e-01	ci right 5.635283e-01	k: 174152	n:310000
KS ci ratio: 1.884693e-01	ci left: 1.262225e-03	ci right 1.527881e-03	k: 431	n:310000
SLC25A13   310000 perm   115 sec   (2691 perm/sec)   p_kst 1.390323e-03   p_cons 5.617806e-01   p_joint 3.312903e-03

Joint ci ratio: 1.210645e-01	ci left: 3.067870e-03	ci right 3.466210e-03	k: 1044	n:320000
Cons ci ratio: 6.120240e-03	ci left: 5.600632e-01	ci right 5.635045e-01	k: 179771	n:320000
KS ci ratio: 1.859056e-01	ci left: 1.258523e-03	ci right 1.519391e-03	k: 443	n:320000
SLC25A13   320000 perm   120 sec   (2661 perm/sec)   p_kst 1.384375e-03   p_cons 5.617844e-01   p_joint 3.262500e-03

Joint ci ratio: 1.202651e-01	ci left: 3.016043e-03	ci right 3.404883e-03	k: 1058	n:330000
Cons ci ratio: 6.026717e-03	ci left: 5.600960e-01	ci right 5.634847e-01	k: 185391	n:330000
KS ci ratio: 1.832426e-01	ci left: 1.257960e-03	ci right 1.514561e-03	k: 456	n:330000
SLC25A13   330000 perm   125 sec   (2630 perm/sec)   p_kst 1.381818e-03   p_cons 5.617909e-01   p_joint 3.206061e-03

Joint ci ratio: 1.226762e-01	ci left: 2.810393e-03	ci right 3.180512e-03	k: 1017	n:340000
Cons ci ratio: 5.938311e-03	ci left: 5.600479e-01	ci right 5.633864e-01	k: 190984	n:340000
KS ci ratio: 1.806908e-01	ci left: 1.257455e-03	ci right 1.509990e-03	k: 469	n:340000
SLC25A13   340000 perm   131 sec   (2596 perm/sec)   p_kst 1.379412e-03   p_cons 5.617176e-01   p_joint 2.991176e-03

Joint ci ratio: 1.210816e-01	ci left: 2.804886e-03	ci right 3.169134e-03	k: 1044	n:350000
Cons ci ratio: 5.857864e-03	ci left: 5.596512e-01	ci right 5.629420e-01	k: 196454	n:350000
KS ci ratio: 1.776911e-01	ci left: 1.265192e-03	ci right 1.514609e-03	k: 485	n:350000
SLC25A13   350000 perm   137 sec   (2564 perm/sec)   p_kst 1.385714e-03   p_cons 5.612971e-01   p_joint 2.982857e-03

Joint ci ratio: 1.194916e-01	ci left: 2.802410e-03	ci right 3.161220e-03	k: 1072	n:360000
Cons ci ratio: 5.776127e-03	ci left: 5.596577e-01	ci right 5.629024e-01	k: 202061	n:360000
KS ci ratio: 1.757144e-01	ci left: 1.259251e-03	ci right 1.504443e-03	k: 496	n:360000
SLC25A13   360000 perm   142 sec   (2531 perm/sec)   p_kst 1.377778e-03   p_cons 5.612806e-01   p_joint 2.977778e-03

Joint ci ratio: 1.177484e-01	ci left: 2.810590e-03	ci right 3.164832e-03	k: 1104	n:370000
Cons ci ratio: 5.696093e-03	ci left: 5.598047e-01	ci right 5.630052e-01	k: 207720	n:370000
KS ci ratio: 1.724478e-01	ci left: 1.274333e-03	ci right 1.517368e-03	k: 515	n:370000
SLC25A13   370000 perm   148 sec   (2504 perm/sec)   p_kst 1.391892e-03   p_cons 5.614054e-01   p_joint 2.983784e-03

Joint ci ratio: 1.035754e-01	ci left: 3.560703e-03	ci right 3.952187e-03	k: 1426	n:380000
Cons ci ratio: 5.621278e-03	ci left: 5.597705e-01	ci right 5.629286e-01	k: 213313	n:380000
KS ci ratio: 1.699944e-01	ci left: 1.278580e-03	ci right 1.518600e-03	k: 530	n:380000
SLC25A13   380000 perm   153 sec   (2476 perm/sec)   p_kst 1.394737e-03   p_cons 5.613500e-01   p_joint 3.752632e-03

Joint ci ratio: 1.030383e-01	ci left: 3.506866e-03	ci right 3.890310e-03	k: 1441	n:390000
Cons ci ratio: 5.548641e-03	ci left: 5.597999e-01	ci right 5.629172e-01	k: 218930	n:390000
KS ci ratio: 1.670312e-01	ci left: 1.292460e-03	ci right 1.530431e-03	k: 549	n:390000
SLC25A13   390000 perm   159 sec   (2448 perm/sec)   p_kst 1.407692e-03   p_cons 5.613590e-01   p_joint 3.694872e-03

Joint ci ratio: 1.081693e-01	ci left: 3.095435e-03	ci right 3.451821e-03	k: 1308	n:400000
Cons ci ratio: 5.478973e-03	ci left: 5.598080e-01	ci right 5.628861e-01	k: 224539	n:400000
KS ci ratio: 1.642178e-01	ci left: 1.305680e-03	ci right 1.541637e-03	k: 568	n:400000
SLC25A13   400000 perm   165 sec   (2421 perm/sec)   p_kst 1.420000e-03   p_cons 5.613475e-01   p_joint 3.270000e-03

Joint ci ratio: 1.065130e-01	ci left: 3.117254e-03	ci right 3.470311e-03	k: 1349	n:410000
Cons ci ratio: 5.411783e-03	ci left: 5.598233e-01	ci right 5.628636e-01	k: 230151	n:410000
KS ci ratio: 1.614045e-01	ci left: 1.320628e-03	ci right 1.554801e-03	k: 588	n:410000
SLC25A13   410000 perm   171 sec   (2396 perm/sec)   p_kst 1.434146e-03   p_cons 5.613439e-01   p_joint 3.290244e-03

Joint ci ratio: 1.052345e-01	ci left: 3.119524e-03	ci right 3.468336e-03	k: 1382	n:420000
Cons ci ratio: 5.345869e-03	ci left: 5.599429e-01	ci right 5.629467e-01	k: 235807	n:420000
KS ci ratio: 1.584706e-01	ci left: 1.339470e-03	ci right 1.572256e-03	k: 610	n:420000
SLC25A13   420000 perm   177 sec   (2372 perm/sec)   p_kst 1.452381e-03   p_cons 5.614452e-01   p_joint 3.290476e-03

Joint ci ratio: 1.046706e-01	ci left: 3.080942e-03	ci right 3.423480e-03	k: 1397	n:430000
Cons ci ratio: 5.284577e-03	ci left: 5.598455e-01	ci right 5.628142e-01	k: 241372	n:430000
KS ci ratio: 1.565604e-01	ci left: 1.341829e-03	ci right 1.571950e-03	k: 625	n:430000
SLC25A13   430000 perm   183 sec   (2347 perm/sec)   p_kst 1.453488e-03   p_cons 5.613302e-01   p_joint 3.248837e-03

Joint ci ratio: 1.049006e-01	ci left: 2.997635e-03	ci right 3.331688e-03	k: 1391	n:440000
Cons ci ratio: 5.226213e-03	ci left: 5.596708e-01	ci right 5.626057e-01	k: 246901	n:440000
KS ci ratio: 1.549600e-01	ci left: 1.339726e-03	ci right 1.566920e-03	k: 638	n:440000
SLC25A13   440000 perm   190 sec   (2320 perm/sec)   p_kst 1.450000e-03   p_cons 5.611386e-01   p_joint 3.161364e-03

Joint ci ratio: 1.040824e-01	ci left: 2.978631e-03	ci right 3.307818e-03	k: 1413	n:450000
Cons ci ratio: 5.170392e-03	ci left: 5.594418e-01	ci right 5.623440e-01	k: 252402	n:450000
KS ci ratio: 1.532899e-01	ci left: 1.339866e-03	ci right 1.564409e-03	k: 652	n:450000
SLC25A13   450000 perm   196 sec   (2294 perm/sec)   p_kst 1.448889e-03   p_cons 5.608933e-01   p_joint 3.140000e-03

Joint ci ratio: 1.032471e-01	ci left: 2.962580e-03	ci right 3.287207e-03	k: 1436	n:460000
Cons ci ratio: 5.113025e-03	ci left: 5.595405e-01	ci right 5.624109e-01	k: 258049	n:460000
KS ci ratio: 1.520155e-01	ci left: 1.333738e-03	ci right 1.555227e-03	k: 663	n:460000
SLC25A13   460000 perm   203 sec   (2270 perm/sec)   p_kst 1.441304e-03   p_cons 5.609761e-01   p_joint 3.121739e-03

Joint ci ratio: 1.048734e-01	ci left: 2.808354e-03	ci right 3.121227e-03	k: 1392	n:470000
Cons ci ratio: 5.058683e-03	ci left: 5.595223e-01	ci right 5.623620e-01	k: 263643	n:470000
KS ci ratio: 1.497757e-01	ci left: 1.346308e-03	ci right 1.566295e-03	k: 683	n:470000
SLC25A13   470000 perm   209 sec   (2247 perm/sec)   p_kst 1.453191e-03   p_cons 5.609426e-01   p_joint 2.961702e-03

Joint ci ratio: 1.036890e-01	ci left: 2.814775e-03	ci right 3.124606e-03	k: 1424	n:480000
Cons ci ratio: 5.004492e-03	ci left: 5.596572e-01	ci right 5.624671e-01	k: 269310	n:480000
KS ci ratio: 1.478425e-01	ci left: 1.354364e-03	ci right 1.572558e-03	k: 701	n:480000
SLC25A13   480000 perm   216 sec   (2224 perm/sec)   p_kst 1.460417e-03   p_cons 5.610625e-01   p_joint 2.966667e-03

Joint ci ratio: 9.830315e-02	ci left: 3.075639e-03	ci right 3.395586e-03	k: 1584	n:490000
Cons ci ratio: 4.953669e-03	ci left: 5.596214e-01	ci right 5.624024e-01	k: 274896	n:490000
KS ci ratio: 1.461857e-01	ci left: 1.358176e-03	ci right 1.574318e-03	k: 717	n:490000
SLC25A13   490000 perm   223 sec   (2202 perm/sec)   p_kst 1.463265e-03   p_cons 5.610122e-01   p_joint 3.232653e-03

Joint ci ratio: 9.714498e-02	ci left: 3.088269e-03	ci right 3.405530e-03	k: 1622	n:500000
Cons ci ratio: 4.902769e-03	ci left: 5.597471e-01	ci right 5.625002e-01	k: 280562	n:500000
KS ci ratio: 1.444849e-01	ci left: 1.363776e-03	ci right 1.578067e-03	k: 734	n:500000
SLC25A13   500000 perm   230 sec   (2171 perm/sec)   p_kst 1.468000e-03   p_cons 5.611240e-01   p_joint 3.244000e-03

Joint ci ratio: 9.681949e-02	ci left: 3.048757e-03	ci right 3.360850e-03	k: 1633	n:510000
Cons ci ratio: 4.854470e-03	ci left: 5.597602e-01	ci right 5.624861e-01	k: 286173	n:510000
KS ci ratio: 1.438029e-01	ci left: 1.350265e-03	ci right 1.561346e-03	k: 741	n:510000
SLC25A13   510000 perm   237 sec   (2147 perm/sec)   p_kst 1.452941e-03   p_cons 5.611235e-01   p_joint 3.201961e-03

Joint ci ratio: 9.661510e-02	ci left: 3.003260e-03	ci right 3.310009e-03	k: 1640	n:520000
Cons ci ratio: 4.807120e-03	ci left: 5.598191e-01	ci right 5.625186e-01	k: 291808	n:520000
KS ci ratio: 1.419024e-01	ci left: 1.361386e-03	ci right 1.571154e-03	k: 761	n:520000
SLC25A13   520000 perm   244 sec   (2128 perm/sec)   p_kst 1.463462e-03   p_cons 5.611692e-01   p_joint 3.153846e-03

Joint ci ratio: 9.638261e-02	ci left: 2.961322e-03	ci right 3.263018e-03	k: 1648	n:530000
Cons ci ratio: 4.761585e-03	ci left: 5.598288e-01	ci right 5.625026e-01	k: 297418	n:530000
KS ci ratio: 1.399857e-01	ci left: 1.373926e-03	ci right 1.582528e-03	k: 782	n:530000
SLC25A13   530000 perm   251 sec   (2107 perm/sec)   p_kst 1.475472e-03   p_cons 5.611660e-01   p_joint 3.109434e-03

Joint ci ratio: 9.574684e-02	ci left: 2.946243e-03	ci right 3.244313e-03	k: 1670	n:540000
Cons ci ratio: 4.718242e-03	ci left: 5.597418e-01	ci right 5.623909e-01	k: 302976	n:540000
KS ci ratio: 1.387509e-01	ci left: 1.373504e-03	ci right 1.580052e-03	k: 796	n:540000
SLC25A13   540000 perm   259 sec   (2089 perm/sec)   p_kst 1.474074e-03   p_cons 5.610667e-01   p_joint 3.092593e-03

Joint ci ratio: 9.487087e-02	ci left: 2.947695e-03	ci right 3.243032e-03	k: 1701	n:550000
Cons ci ratio: 4.674905e-03	ci left: 5.597800e-01	ci right 5.624048e-01	k: 308601	n:550000
KS ci ratio: 1.373786e-01	ci left: 1.376618e-03	ci right 1.581418e-03	k: 812	n:550000
SLC25A13   550000 perm   266 sec   (2068 perm/sec)   p_kst 1.476364e-03   p_cons 5.610927e-01   p_joint 3.092727e-03

Joint ci ratio: 9.453979e-02	ci left: 2.915977e-03	ci right 3.207059e-03	k: 1713	n:560000
Cons ci ratio: 4.634118e-03	ci left: 5.596704e-01	ci right 5.622718e-01	k: 314144	n:560000
KS ci ratio: 1.362935e-01	ci left: 1.374455e-03	ci right 1.577187e-03	k: 825	n:560000
SLC25A13   560000 perm   273 sec   (2048 perm/sec)   p_kst 1.473214e-03   p_cons 5.609714e-01   p_joint 3.058929e-03

Joint ci ratio: 9.399387e-02	ci left: 2.899079e-03	ci right 3.186711e-03	k: 1733	n:570000
Cons ci ratio: 4.593562e-03	ci left: 5.596526e-01	ci right 5.622310e-01	k: 319737	n:570000
KS ci ratio: 1.347520e-01	ci left: 1.382545e-03	ci right 1.583980e-03	k: 844	n:570000
SLC25A13   570000 perm   281 sec   (2030 perm/sec)   p_kst 1.480702e-03   p_cons 5.609421e-01   p_joint 3.040351e-03

Joint ci ratio: 9.002146e-02	ci left: 3.111889e-03	ci right 3.406901e-03	k: 1889	n:580000
Cons ci ratio: 4.552633e-03	ci left: 5.597889e-01	ci right 5.623449e-01	k: 325419	n:580000
KS ci ratio: 1.335716e-01	ci left: 1.383702e-03	ci right 1.583399e-03	k: 859	n:580000
SLC25A13   580000 perm   289 sec   (2010 perm/sec)   p_kst 1.481034e-03   p_cons 5.610672e-01   p_joint 3.256897e-03

Joint ci ratio: 8.919914e-02	ci left: 3.117138e-03	ci right 3.409807e-03	k: 1924	n:590000
Cons ci ratio: 4.512670e-03	ci left: 5.599326e-01	ci right 5.624668e-01	k: 331108	n:590000
KS ci ratio: 1.320445e-01	ci left: 1.393022e-03	ci right 1.591585e-03	k: 879	n:590000
SLC25A13   590000 perm   296 sec   (1993 perm/sec)   p_kst 1.489831e-03   p_cons 5.612000e-01   p_joint 3.261017e-03

Joint ci ratio: 8.874029e-02	ci left: 3.097776e-03	ci right 3.387053e-03	k: 1944	n:600000
Cons ci ratio: 4.474453e-03	ci left: 5.599933e-01	ci right 5.625062e-01	k: 336750	n:600000
KS ci ratio: 1.313011e-01	ci left: 1.385923e-03	ci right 1.582275e-03	k: 889	n:600000
SLC25A13   600000 perm   304 sec   (1975 perm/sec)   p_kst 1.481667e-03   p_cons 5.612500e-01   p_joint 3.240000e-03

Joint ci ratio: 9.007652e-02	ci left: 2.955630e-03	ci right 3.236008e-03	k: 1887	n:610000
Cons ci ratio: 4.436865e-03	ci left: 5.600881e-01	ci right 5.625802e-01	k: 342414	n:610000
KS ci ratio: 1.302805e-01	ci left: 1.385402e-03	ci right 1.580037e-03	k: 903	n:610000
SLC25A13   610000 perm   312 sec   (1957 perm/sec)   p_kst 1.480328e-03   p_cons 5.613344e-01   p_joint 3.093443e-03

Joint ci ratio: 8.668993e-02	ci left: 3.144561e-03	ci right 3.431079e-03	k: 2037	n:620000
Cons ci ratio: 4.398883e-03	ci left: 5.603283e-01	ci right 5.628001e-01	k: 348170	n:620000
KS ci ratio: 1.291425e-01	ci left: 1.388026e-03	ci right 1.581196e-03	k: 919	n:620000
SLC25A13   620000 perm   320 sec   (1940 perm/sec)   p_kst 1.482258e-03   p_cons 5.615645e-01   p_joint 3.285484e-03

Joint ci ratio: 8.585103e-02	ci left: 3.156770e-03	ci right 3.441478e-03	k: 2077	n:630000
Cons ci ratio: 4.364586e-03	ci left: 5.602530e-01	ci right 5.627052e-01	k: 353732	n:630000
KS ci ratio: 1.278289e-01	ci left: 1.395184e-03	ci right 1.587225e-03	k: 938	n:630000
SLC25A13   630000 perm   328 sec   (1924 perm/sec)   p_kst 1.488889e-03   p_cons 5.614794e-01   p_joint 3.296825e-03

Joint ci ratio: 8.564675e-02	ci left: 3.122733e-03	ci right 3.403668e-03	k: 2087	n:640000
Cons ci ratio: 4.330873e-03	ci left: 5.602036e-01	ci right 5.626365e-01	k: 359309	n:640000
KS ci ratio: 1.267534e-01	ci left: 1.397588e-03	ci right 1.588220e-03	k: 954	n:640000
SLC25A13   640000 perm   336 sec   (1908 perm/sec)   p_kst 1.490625e-03   p_cons 5.614203e-01   p_joint 3.260937e-03

Joint ci ratio: 8.616796e-02	ci left: 3.037050e-03	ci right 3.312023e-03	k: 2062	n:650000
Cons ci ratio: 4.296586e-03	ci left: 5.603096e-01	ci right 5.627237e-01	k: 364986	n:650000
KS ci ratio: 1.257047e-01	ci left: 1.399925e-03	ci right 1.589178e-03	k: 970	n:650000
SLC25A13   650000 perm   344 sec   (1892 perm/sec)   p_kst 1.492308e-03   p_cons 5.615169e-01   p_joint 3.172308e-03

Joint ci ratio: 8.550733e-02	ci left: 3.038479e-03	ci right 3.311366e-03	k: 2094	n:660000
Cons ci ratio: 4.264020e-03	ci left: 5.603064e-01	ci right 5.627021e-01	k: 370593	n:660000
KS ci ratio: 1.249990e-01	ci left: 1.394858e-03	ci right 1.582289e-03	k: 981	n:660000
SLC25A13   660000 perm   352 sec   (1876 perm/sec)   p_kst 1.486364e-03   p_cons 5.615045e-01   p_joint 3.172727e-03

Joint ci ratio: 8.528505e-02	ci left: 3.009193e-03	ci right 3.278713e-03	k: 2105	n:670000
Cons ci ratio: 4.231207e-03	ci left: 5.604168e-01	ci right 5.627946e-01	k: 376276	n:670000
KS ci ratio: 1.239929e-01	ci left: 1.397176e-03	ci right 1.583296e-03	k: 997	n:670000
SLC25A13   670000 perm   361 sec   (1858 perm/sec)   p_kst 1.488060e-03   p_cons 5.616060e-01   p_joint 3.141791e-03

Joint ci ratio: 8.492375e-02	ci left: 2.990847e-03	ci right 3.257532e-03	k: 2123	n:680000
Cons ci ratio: 4.199768e-03	ci left: 5.604505e-01	ci right 5.628107e-01	k: 381909	n:680000
KS ci ratio: 1.231933e-01	ci left: 1.395156e-03	ci right 1.579721e-03	k: 1010	n:680000
SLC25A13   680000 perm   369 sec   (1842 perm/sec)   p_kst 1.485294e-03   p_cons 5.616309e-01   p_joint 3.122059e-03

Joint ci ratio: 8.448789e-02	ci left: 2.978709e-03	ci right 3.242881e-03	k: 2145	n:690000
Cons ci ratio: 4.168761e-03	ci left: 5.605138e-01	ci right 5.628567e-01	k: 387563	n:690000
KS ci ratio: 1.226491e-01	ci left: 1.387578e-03	ci right 1.570271e-03	k: 1019	n:690000
SLC25A13   690000 perm   378 sec   (1826 perm/sec)   p_kst 1.476812e-03   p_cons 5.616855e-01   p_joint 3.108696e-03

Joint ci ratio: 8.508843e-02	ci left: 2.894202e-03	ci right 3.152795e-03	k: 2115	n:700000
Cons ci ratio: 4.138660e-03	ci left: 5.605481e-01	ci right 5.628742e-01	k: 393198	n:700000
KS ci ratio: 1.221715e-01	ci left: 1.378834e-03	ci right 1.559618e-03	k: 1027	n:700000
SLC25A13   700000 perm   386 sec   (1812 perm/sec)   p_kst 1.467143e-03   p_cons 5.617114e-01   p_joint 3.021429e-03

Joint ci ratio: 8.455091e-02	ci left: 2.890660e-03	ci right 3.147224e-03	k: 2142	n:710000
Cons ci ratio: 4.108977e-03	ci left: 5.606083e-01	ci right 5.629179e-01	k: 398852	n:710000
KS ci ratio: 1.216407e-01	ci left: 1.371703e-03	ci right 1.550714e-03	k: 1036	n:710000
SLC25A13   710000 perm   395 sec   (1796 perm/sec)   p_kst 1.459155e-03   p_cons 5.617634e-01   p_joint 3.016901e-03

Joint ci ratio: 8.394587e-02	ci left: 2.892661e-03	ci right 3.147475e-03	k: 2173	n:720000
Cons ci ratio: 4.081133e-03	ci left: 5.605210e-01	ci right 5.628146e-01	k: 404401	n:720000
KS ci ratio: 1.205411e-01	ci left: 1.378241e-03	ci right 1.556364e-03	k: 1055	n:720000
SLC25A13   720000 perm   404 sec   (1781 perm/sec)   p_kst 1.465278e-03   p_cons 5.616681e-01   p_joint 3.018056e-03

Joint ci ratio: 8.439657e-02	ci left: 2.822187e-03	ci right 3.072194e-03	k: 2150	n:730000
Cons ci ratio: 4.053599e-03	ci left: 5.604663e-01	ci right 5.627442e-01	k: 409972	n:730000
KS ci ratio: 1.197500e-01	ci left: 1.377963e-03	ci right 1.554798e-03	k: 1069	n:730000
SLC25A13   730000 perm   414 sec   (1765 perm/sec)   p_kst 1.464384e-03   p_cons 5.616055e-01   p_joint 2.945205e-03

Joint ci ratio: 8.420218e-02	ci left: 2.797277e-03	ci right 3.044478e-03	k: 2160	n:740000
Cons ci ratio: 4.025675e-03	ci left: 5.605280e-01	ci right 5.627904e-01	k: 415628	n:740000
KS ci ratio: 1.190292e-01	ci left: 1.376385e-03	ci right 1.551879e-03	k: 1082	n:740000
SLC25A13   740000 perm   423 sec   (1750 perm/sec)   p_kst 1.462162e-03   p_cons 5.616595e-01   p_joint 2.918919e-03

Joint ci ratio: 8.385430e-02	ci left: 2.783474e-03	ci right 3.028390e-03	k: 2178	n:750000
Cons ci ratio: 3.998148e-03	ci left: 5.606095e-01	ci right 5.628567e-01	k: 421300	n:750000
KS ci ratio: 1.182133e-01	ci left: 1.377440e-03	ci right 1.551781e-03	k: 1097	n:750000
SLC25A13   750000 perm   432 sec   (1736 perm/sec)   p_kst 1.462667e-03   p_cons 5.617333e-01   p_joint 2.904000e-03

Joint ci ratio: 8.337759e-02	ci left: 2.779056e-03	ci right 3.022125e-03	k: 2203	n:760000
Cons ci ratio: 3.971686e-03	ci left: 5.606257e-01	ci right 5.628580e-01	k: 426924	n:760000
KS ci ratio: 1.175198e-01	ci left: 1.375916e-03	ci right 1.548972e-03	k: 1110	n:760000
SLC25A13   760000 perm   441 sec   (1723 perm/sec)   p_kst 1.460526e-03   p_cons 5.617421e-01   p_joint 2.898684e-03

Joint ci ratio: 8.471960e-02	ci left: 2.655231e-03	ci right 2.891392e-03	k: 2134	n:770000
Cons ci ratio: 3.945244e-03	ci left: 5.607039e-01	ci right 5.629216e-01	k: 432596	n:770000
KS ci ratio: 1.165273e-01	ci left: 1.382001e-03	ci right 1.554252e-03	k: 1129	n:770000
SLC25A13   770000 perm   450 sec   (1709 perm/sec)   p_kst 1.466234e-03   p_cons 5.618130e-01   p_joint 2.771429e-03

Joint ci ratio: 8.430636e-02	ci left: 2.647543e-03	ci right 2.881815e-03	k: 2155	n:780000
Cons ci ratio: 3.920262e-03	ci left: 5.606621e-01	ci right 5.628656e-01	k: 438176	n:780000
KS ci ratio: 1.158121e-01	ci left: 1.381710e-03	ci right 1.552796e-03	k: 1143	n:780000
SLC25A13   780000 perm   460 sec   (1696 perm/sec)   p_kst 1.465385e-03   p_cons 5.617641e-01   p_joint 2.762821e-03

Joint ci ratio: 8.156519e-02	ci left: 2.796256e-03	ci right 3.035260e-03	k: 2302	n:790000
Cons ci ratio: 3.895578e-03	ci left: 5.606430e-01	ci right 5.628325e-01	k: 443773	n:790000
KS ci ratio: 1.150602e-01	ci left: 1.382659e-03	ci right 1.552676e-03	k: 1158	n:790000
SLC25A13   790000 perm   469 sec   (1684 perm/sec)   p_kst 1.465823e-03   p_cons 5.617380e-01   p_joint 2.913924e-03

Joint ci ratio: 8.100422e-02	ci left: 2.800490e-03	ci right 3.038132e-03	k: 2334	n:800000
Cons ci ratio: 3.870833e-03	ci left: 5.606906e-01	ci right 5.628664e-01	k: 449423	n:800000
KS ci ratio: 1.138865e-01	ci left: 1.394517e-03	ci right 1.564125e-03	k: 1182	n:800000
SLC25A13   800000 perm   479 sec   (1672 perm/sec)   p_kst 1.477500e-03   p_cons 5.617787e-01   p_joint 2.917500e-03

Joint ci ratio: 8.121524e-02	ci left: 2.751399e-03	ci right 2.985512e-03	k: 2322	n:810000
Cons ci ratio: 3.848040e-03	ci left: 5.605470e-01	ci right 5.627094e-01	k: 454919	n:810000
KS ci ratio: 1.133609e-01	ci left: 1.390495e-03	ci right 1.558781e-03	k: 1193	n:810000
SLC25A13   810000 perm   488 sec   (1659 perm/sec)   p_kst 1.472840e-03   p_cons 5.616284e-01   p_joint 2.866667e-03

Joint ci ratio: 8.088561e-02	ci left: 2.740546e-03	ci right 2.972745e-03	k: 2341	n:820000
Cons ci ratio: 3.824734e-03	ci left: 5.605240e-01	ci right 5.626731e-01	k: 460511	n:820000
KS ci ratio: 1.127022e-01	ci left: 1.390128e-03	ci right 1.557328e-03	k: 1207	n:820000
SLC25A13   820000 perm   498 sec   (1647 perm/sec)   p_kst 1.471951e-03   p_cons 5.615988e-01   p_joint 2.854878e-03

Joint ci ratio: 8.042343e-02	ci left: 2.739401e-03	ci right 2.970114e-03	k: 2368	n:830000
Cons ci ratio: 3.801661e-03	ci left: 5.605257e-01	ci right 5.626618e-01	k: 466123	n:830000
KS ci ratio: 1.121467e-01	ci left: 1.387431e-03	ci right 1.553429e-03	k: 1219	n:830000
SLC25A13   830000 perm   508 sec   (1635 perm/sec)   p_kst 1.468675e-03   p_cons 5.615940e-01   p_joint 2.853012e-03

Joint ci ratio: 7.986886e-02	ci left: 2.745288e-03	ci right 2.974829e-03	k: 2401	n:840000
Cons ci ratio: 3.779430e-03	ci left: 5.604714e-01	ci right 5.625948e-01	k: 471688	n:840000
KS ci ratio: 1.113282e-01	ci left: 1.391744e-03	ci right 1.556963e-03	k: 1237	n:840000
SLC25A13   840000 perm   518 sec   (1623 perm/sec)   p_kst 1.472619e-03   p_cons 5.615333e-01   p_joint 2.858333e-03

Joint ci ratio: 7.947303e-02	ci left: 2.740663e-03	ci right 2.968629e-03	k: 2425	n:850000
Cons ci ratio: 3.757243e-03	ci left: 5.604632e-01	ci right 5.625741e-01	k: 477291	n:850000
KS ci ratio: 1.105274e-01	ci left: 1.395959e-03	ci right 1.560409e-03	k: 1255	n:850000
SLC25A13   850000 perm   528 sec   (1611 perm/sec)   p_kst 1.476471e-03   p_cons 5.615188e-01   p_joint 2.852941e-03

Joint ci ratio: 7.995502e-02	ci left: 2.675742e-03	ci right 2.899721e-03	k: 2396	n:860000
Cons ci ratio: 3.735469e-03	ci left: 5.604517e-01	ci right 5.625503e-01	k: 482891	n:860000
KS ci ratio: 1.100468e-01	ci left: 1.392165e-03	ci right 1.555408e-03	k: 1266	n:860000
SLC25A13   860000 perm   537 sec   (1600 perm/sec)   p_kst 1.472093e-03   p_cons 5.615012e-01   p_joint 2.786047e-03

Joint ci ratio: 7.985614e-02	ci left: 2.651744e-03	ci right 2.873426e-03	k: 2402	n:870000
Cons ci ratio: 3.713835e-03	ci left: 5.604715e-01	ci right 5.625580e-01	k: 488518	n:870000
KS ci ratio: 1.096154e-01	ci left: 1.387341e-03	ci right 1.549340e-03	k: 1276	n:870000
SLC25A13   870000 perm   548 sec   (1589 perm/sec)   p_kst 1.466667e-03   p_cons 5.615149e-01   p_joint 2.760920e-03

Joint ci ratio: 7.949334e-02	ci left: 2.646112e-03	ci right 2.866272e-03	k: 2424	n:880000
Cons ci ratio: 3.692760e-03	ci left: 5.604659e-01	ci right 5.625405e-01	k: 494123	n:880000
KS ci ratio: 1.092740e-01	ci left: 1.380418e-03	ci right 1.541074e-03	k: 1284	n:880000
SLC25A13   880000 perm   558 sec   (1577 perm/sec)   p_kst 1.459091e-03   p_cons 5.615034e-01   p_joint 2.754545e-03

Joint ci ratio: 7.907065e-02	ci left: 2.645015e-03	ci right 2.863859e-03	k: 2450	n:890000
Cons ci ratio: 3.672249e-03	ci left: 5.604324e-01	ci right 5.624953e-01	k: 499703	n:890000
KS ci ratio: 1.089359e-01	ci left: 1.373651e-03	ci right 1.532993e-03	k: 1292	n:890000
SLC25A13   890000 perm   569 sec   (1565 perm/sec)   p_kst 1.451685e-03   p_cons 5.614640e-01   p_joint 2.752809e-03

Joint ci ratio: 6.695222e-02	ci left: 3.667375e-03	ci right 3.922502e-03	k: 3414	n:900000
Cons ci ratio: 3.652175e-03	ci left: 5.603863e-01	ci right 5.624377e-01	k: 505271	n:900000
KS ci ratio: 1.093611e-01	ci left: 1.347579e-03	ci right 1.504547e-03	k: 1282	n:900000
SLC25A13   900000 perm   579 sec   (1555 perm/sec)   p_kst 1.424444e-03   p_cons 5.614122e-01   p_joint 3.793333e-03

Joint ci ratio: 6.649586e-02	ci left: 3.677861e-03	ci right 3.931907e-03	k: 3461	n:910000
Cons ci ratio: 3.632013e-03	ci left: 5.603973e-01	ci right 5.624375e-01	k: 510890	n:910000
KS ci ratio: 1.085599e-01	ci left: 1.353081e-03	ci right 1.509461e-03	k: 1301	n:910000
SLC25A13   910000 perm   589 sec   (1544 perm/sec)   p_kst 1.429670e-03   p_cons 5.614176e-01   p_joint 3.803297e-03

Joint ci ratio: 6.602982e-02	ci left: 3.690263e-03	ci right 3.943311e-03	k: 3510	n:920000
Cons ci ratio: 3.612444e-03	ci left: 5.603722e-01	ci right 5.624013e-01	k: 516476	n:920000
KS ci ratio: 1.077353e-01	ci left: 1.359525e-03	ci right 1.515380e-03	k: 1321	n:920000
SLC25A13   920000 perm   600 sec   (1533 perm/sec)   p_kst 1.435870e-03   p_cons 5.613870e-01   p_joint 3.815217e-03

Joint ci ratio: 6.699572e-02	ci left: 3.544836e-03	ci right 3.791605e-03	k: 3410	n:930000
Cons ci ratio: 3.593001e-03	ci left: 5.603736e-01	ci right 5.623916e-01	k: 522086	n:930000
KS ci ratio: 1.072095e-01	ci left: 1.358509e-03	ci right 1.513440e-03	k: 1334	n:930000
SLC25A13   930000 perm   611 sec   (1523 perm/sec)   p_kst 1.434409e-03   p_cons 5.613828e-01   p_joint 3.666667e-03

Joint ci ratio: 6.659652e-02	ci left: 3.550013e-03	ci right 3.795614e-03	k: 3451	n:940000
Cons ci ratio: 3.573644e-03	ci left: 5.604057e-01	ci right 5.624130e-01	k: 527725	n:940000
KS ci ratio: 1.066914e-01	ci left: 1.357517e-03	ci right 1.511539e-03	k: 1347	n:940000
SLC25A13   940000 perm   621 sec   (1513 perm/sec)   p_kst 1.432979e-03   p_cons 5.614096e-01   p_joint 3.671277e-03

Joint ci ratio: 6.949630e-02	ci left: 3.221867e-03	ci right 3.454862e-03	k: 3170	n:950000
Cons ci ratio: 3.554710e-03	ci left: 5.604215e-01	ci right 5.624182e-01	k: 533349	n:950000
KS ci ratio: 1.059859e-01	ci left: 1.361671e-03	ci right 1.515079e-03	k: 1365	n:950000
SLC25A13   950000 perm   633 sec   (1501 perm/sec)   p_kst 1.436842e-03   p_cons 5.614200e-01   p_joint 3.336842e-03

Joint ci ratio: 6.913750e-02	ci left: 3.222085e-03	ci right 3.453844e-03	k: 3203	n:960000
Cons ci ratio: 3.535737e-03	ci left: 5.604838e-01	ci right 5.624700e-01	k: 539018	n:960000
KS ci ratio: 1.054852e-01	ci left: 1.360670e-03	ci right 1.513197e-03	k: 1378	n:960000
SLC25A13   960000 perm   644 sec   (1492 perm/sec)   p_kst 1.435417e-03   p_cons 5.614771e-01   p_joint 3.336458e-03

Joint ci ratio: 7.039524e-02	ci left: 3.074397e-03	ci right 3.299720e-03	k: 3090	n:970000
Cons ci ratio: 3.517500e-03	ci left: 5.604840e-01	ci right 5.624600e-01	k: 544628	n:970000
KS ci ratio: 1.049916e-01	ci left: 1.359692e-03	ci right 1.511352e-03	k: 1391	n:970000
SLC25A13   970000 perm   655 sec   (1482 perm/sec)   p_kst 1.434021e-03   p_cons 5.614722e-01   p_joint 3.185567e-03

Joint ci ratio: 7.023700e-02	ci left: 3.057059e-03	ci right 3.280587e-03	k: 3104	n:980000
Cons ci ratio: 3.499513e-03	ci left: 5.604883e-01	ci right 5.624542e-01	k: 550242	n:980000
KS ci ratio: 1.043561e-01	ci left: 1.362710e-03	ci right 1.513730e-03	k: 1408	n:980000
SLC25A13   980000 perm   667 sec   (1470 perm/sec)   p_kst 1.436735e-03   p_cons 5.614714e-01   p_joint 3.167347e-03

Joint ci ratio: 6.993376e-02	ci left: 3.052974e-03	ci right 3.275201e-03	k: 3131	n:990000
Cons ci ratio: 3.482299e-03	ci left: 5.604219e-01	ci right 5.623778e-01	k: 555786	n:990000
KS ci ratio: 1.036230e-01	ci left: 1.368622e-03	ci right 1.519167e-03	k: 1428	n:990000
SLC25A13   990000 perm   678 sec   (1459 perm/sec)   p_kst 1.442424e-03   p_cons 5.614000e-01   p_joint 3.162626e-03

Joint ci ratio: 6.974525e-02	ci left: 3.039147e-03	ci right 3.259747e-03	k: 3148	n:1000000
Cons ci ratio: 3.464330e-03	ci left: 5.604998e-01	ci right 5.624459e-01	k: 561473	n:1000000
KS ci ratio: 1.030476e-01	ci left: 1.370523e-03	ci right 1.520389e-03	k: 1444	n:1000000
SLC25A13   1000000 perm   690 sec   (1450 perm/sec)   p_kst 1.444000e-03   p_cons 5.614730e-01   p_joint 3.148000e-03

Joint ci ratio: 6.941543e-02	ci left: 3.038242e-03	ci right 3.257692e-03	k: 3178	n:1010000
Cons ci ratio: 3.447523e-03	ci left: 5.604494e-01	ci right 5.623859e-01	k: 567032	n:1010000
KS ci ratio: 1.025520e-01	ci left: 1.370458e-03	ci right 1.519553e-03	k: 1458	n:1010000
SLC25A13   1010000 perm   702 sec   (1439 perm/sec)   p_kst 1.443564e-03   p_cons 5.614178e-01   p_joint 3.146535e-03

Joint ci ratio: 6.939461e-02	ci left: 3.010381e-03	ci right 3.227750e-03	k: 3180	n:1020000
Cons ci ratio: 3.430228e-03	ci left: 5.605050e-01	ci right 5.624319e-01	k: 572698	n:1020000
KS ci ratio: 1.021678e-01	ci left: 1.367530e-03	ci right 1.515716e-03	k: 1469	n:1020000
SLC25A13   1020000 perm   713 sec   (1430 perm/sec)   p_kst 1.440196e-03   p_cons 5.614686e-01   p_joint 3.117647e-03

Joint ci ratio: 6.343985e-02	ci left: 3.576014e-03	ci right 3.811256e-03	k: 3803	n:1030000
Cons ci ratio: 3.413877e-03	ci left: 5.604605e-01	ci right 5.623780e-01	k: 578262	n:1030000
KS ci ratio: 1.016847e-01	ci left: 1.367499e-03	ci right 1.514939e-03	k: 1483	n:1030000
SLC25A13   1030000 perm   725 sec   (1420 perm/sec)   p_kst 1.439806e-03   p_cons 5.614194e-01   p_joint 3.692233e-03

Joint ci ratio: 6.212692e-02	ci left: 3.694961e-03	ci right 3.932816e-03	k: 3965	n:1040000
Cons ci ratio: 3.397214e-03	ci left: 5.604957e-01	ci right 5.624040e-01	k: 583908	n:1040000
KS ci ratio: 1.011747e-01	ci left: 1.368407e-03	ci right 1.515161e-03	k: 1498	n:1040000
SLC25A13   1040000 perm   737 sec   (1411 perm/sec)   p_kst 1.440385e-03   p_cons 5.614500e-01   p_joint 3.812500e-03

Joint ci ratio: 6.177723e-02	ci left: 3.701964e-03	ci right 3.938881e-03	k: 4010	n:1050000
Cons ci ratio: 3.380740e-03	ci left: 5.605379e-01	ci right 5.624370e-01	k: 589562	n:1050000
KS ci ratio: 1.006389e-01	ci left: 1.370229e-03	ci right 1.516353e-03	k: 1514	n:1050000
SLC25A13   1050000 perm   749 sec   (1401 perm/sec)   p_kst 1.441905e-03   p_cons 5.614876e-01   p_joint 3.819048e-03

Joint ci ratio: 6.139540e-02	ci left: 3.713484e-03	ci right 3.949617e-03	k: 4060	n:1060000
Cons ci ratio: 3.364329e-03	ci left: 5.606048e-01	ci right 5.624949e-01	k: 595243	n:1060000
KS ci ratio: 9.991572e-02	ci left: 1.377536e-03	ci right 1.523323e-03	k: 1536	n:1060000
SLC25A13   1060000 perm   761 sec   (1393 perm/sec)   p_kst 1.449057e-03   p_cons 5.615500e-01   p_joint 3.830189e-03

Outputting figure to mutsig2_images.part000000000159/SLC25A13.8_2103_1060000_0.0014491_0.56155_0.0038302.png
                gene_name: SLC25A13
               theta_stop: 0.100 
                    nperm: 1060000 
                     p_ks: 0.0014 
        ci_ks_bounds_left: 0.0014 
       ci_ks_bounds_right: 0.0015 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.0038 
     ci_joint_bounds_left: 0.0037 
    ci_joint_bounds_right: 0.0039 

Current progress: 3 percent done.
SLC1A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.293129e-02	ci left: 5.764730e-01	ci right 5.958768e-01	k: 5862	n:10000
Cons ci ratio: 3.470749e-02	ci left: 5.507057e-01	ci right 5.702590e-01	k: 5605	n:10000
KS ci ratio: 4.232008e-02	ci left: 4.518913e-01	ci right 4.715310e-01	k: 4617	n:10000
SLC1A3   10000 perm   2 sec   (5016 perm/sec)   p_kst 4.617000e-01   p_cons 5.605000e-01   p_joint 5.862000e-01

Outputting figure to mutsig2_images.part000000000159/SLC1A3.7_1682_10000_0.4617_0.5605_0.5862.png
                gene_name: SLC1A3
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 5 percent done.
SLC1A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.291532e-02	ci left: 7.366399e-01	ci right 7.538170e-01	k: 7453	n:10000
Cons ci ratio: 3.970690e-02	ci left: 4.836541e-01	ci right 5.033497e-01	k: 4935	n:10000
KS ci ratio: 2.449299e-02	ci left: 7.102792e-01	ci right 7.279930e-01	k: 7192	n:10000
SLC1A6   10000 perm   2 sec   (5106 perm/sec)   p_kst 7.192000e-01   p_cons 4.935000e-01   p_joint 7.453000e-01

Outputting figure to mutsig2_images.part000000000159/SLC1A6.7_1731_10000_0.7192_0.4935_0.7453.png
                gene_name: SLC1A6
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 7 percent done.
SLC23A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.386189e-02	ci left: 8.825771e-01	ci right 8.949954e-01	k: 8889	n:10000
Cons ci ratio: 3.630636e-02	ci left: 5.283689e-01	ci right 5.480089e-01	k: 5382	n:10000
KS ci ratio: 1.611275e-02	ci left: 8.484554e-01	ci right 8.623369e-01	k: 8555	n:10000
SLC23A2   10000 perm   2 sec   (5068 perm/sec)   p_kst 8.555000e-01   p_cons 5.382000e-01   p_joint 8.889000e-01

Outputting figure to mutsig2_images.part000000000159/SLC23A2.7_2013_10000_0.8555_0.5382_0.8889.png
                gene_name: SLC23A2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 9 percent done.
SLC24A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.606345e-01	ci left: 5.166964e-02	ci right 6.079103e-02	k: 561	n:10000
Cons ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
KS ci ratio: 1.386189e-02	ci left: 8.825771e-01	ci right 8.949954e-01	k: 8889	n:10000
SLC24A2   10000 perm   2 sec   (5373 perm/sec)   p_kst 8.889000e-01   p_cons 1.190000e-02   p_joint 5.610000e-02

Joint ci ratio: 9.364690e-02	ci left: 7.676561e-02	ci right 8.435686e-02	k: 1610	n:20000
Cons ci ratio: 2.201831e-01	ci left: 1.388097e-02	ci right 1.736192e-02	k: 311	n:20000
KS ci ratio: 9.686189e-03	ci left: 8.868025e-01	ci right 8.954835e-01	k: 17824	n:20000
SLC24A2   20000 perm   4 sec   (4709 perm/sec)   p_kst 8.912000e-01   p_cons 1.555000e-02   p_joint 8.050000e-02

Joint ci ratio: 8.452210e-02	ci left: 6.406544e-02	ci right 6.975211e-02	k: 2006	n:30000
Cons ci ratio: 2.019752e-01	ci left: 1.114681e-02	ci right 1.368226e-02	k: 371	n:30000
KS ci ratio: 7.955891e-03	ci left: 8.864387e-01	ci right 8.935523e-01	k: 26701	n:30000
SLC24A2   30000 perm   7 sec   (4451 perm/sec)   p_kst 8.900333e-01   p_cons 1.236667e-02   p_joint 6.686667e-02

Joint ci ratio: 8.428630e-02	ci left: 4.913371e-02	ci right 5.348172e-02	k: 2051	n:40000
Cons ci ratio: 1.765454e-01	ci left: 1.109941e-02	ci right 1.327227e-02	k: 486	n:40000
KS ci ratio: 6.907736e-03	ci left: 8.864121e-01	ci right 8.925812e-01	k: 35581	n:40000
SLC24A2   40000 perm   9 sec   (4291 perm/sec)   p_kst 8.895250e-01   p_cons 1.215000e-02   p_joint 5.127500e-02

Joint ci ratio: 7.954524e-02	ci left: 4.447451e-02	ci right 4.817839e-02	k: 2315	n:50000
Cons ci ratio: 1.590687e-01	ci left: 1.104480e-02	ci right 1.297248e-02	k: 599	n:50000
KS ci ratio: 6.722234e-03	ci left: 8.688583e-01	ci right 8.747385e-01	k: 43591	n:50000
SLC24A2   50000 perm   12 sec   (4175 perm/sec)   p_kst 8.718200e-01   p_cons 1.198000e-02   p_joint 4.630000e-02

Joint ci ratio: 6.866702e-02	ci left: 4.974494e-02	ci right 5.329860e-02	k: 3090	n:60000
Cons ci ratio: 1.452094e-01	ci left: 1.112802e-02	ci right 1.288633e-02	k: 719	n:60000
KS ci ratio: 6.130179e-03	ci left: 8.693509e-01	ci right 8.747131e-01	k: 52323	n:60000
SLC24A2   60000 perm   15 sec   (4051 perm/sec)   p_kst 8.720500e-01   p_cons 1.198333e-02   p_joint 5.150000e-02

Joint ci ratio: 6.321532e-02	ci left: 5.042297e-02	ci right 5.372857e-02	k: 3644	n:70000
Cons ci ratio: 1.340348e-01	ci left: 1.126176e-02	ci right 1.289334e-02	k: 844	n:70000
KS ci ratio: 5.685404e-03	ci left: 8.691568e-01	ci right 8.741266e-01	k: 61016	n:70000
SLC24A2   70000 perm   18 sec   (3937 perm/sec)   p_kst 8.716571e-01   p_cons 1.205714e-02   p_joint 5.205714e-02

Joint ci ratio: 5.851800e-02	ci left: 5.155615e-02	ci right 5.467636e-02	k: 4248	n:80000
Cons ci ratio: 1.260881e-01	ci left: 1.118430e-02	ci right 1.270140e-02	k: 954	n:80000
KS ci ratio: 5.325192e-03	ci left: 8.690228e-01	ci right 8.736752e-01	k: 69709	n:80000
SLC24A2   80000 perm   21 sec   (3845 perm/sec)   p_kst 8.713625e-01   p_cons 1.192500e-02   p_joint 5.310000e-02

Joint ci ratio: 5.433094e-02	ci left: 5.319030e-02	ci right 5.617182e-02	k: 4920	n:90000
Cons ci ratio: 1.190102e-01	ci left: 1.120177e-02	ci right 1.262994e-02	k: 1071	n:90000
KS ci ratio: 5.098621e-03	ci left: 8.656369e-01	ci right 8.700727e-01	k: 78108	n:90000
SLC24A2   90000 perm   24 sec   (3759 perm/sec)   p_kst 8.678667e-01   p_cons 1.190000e-02   p_joint 5.466667e-02

Joint ci ratio: 5.329674e-02	ci left: 4.995058e-02	ci right 5.269552e-02	k: 5131	n:100000
Cons ci ratio: 1.132457e-01	ci left: 1.116906e-02	ci right 1.251947e-02	k: 1183	n:100000
KS ci ratio: 4.834788e-03	ci left: 8.658562e-01	ci right 8.700625e-01	k: 86797	n:100000
SLC24A2   100000 perm   27 sec   (3680 perm/sec)   p_kst 8.679700e-01   p_cons 1.183000e-02   p_joint 5.131000e-02

Joint ci ratio: 5.258407e-02	ci left: 4.682492e-02	ci right 4.936261e-02	k: 5289	n:110000
Cons ci ratio: 1.081185e-01	ci left: 1.117021e-02	ci right 1.245572e-02	k: 1298	n:110000
KS ci ratio: 4.598385e-03	ci left: 8.665252e-01	ci right 8.705280e-01	k: 95539	n:110000
SLC24A2   110000 perm   30 sec   (3614 perm/sec)   p_kst 8.685364e-01   p_cons 1.180000e-02   p_joint 4.808182e-02

Joint ci ratio: 4.819857e-02	ci left: 5.098113e-02	ci right 5.350724e-02	k: 6268	n:120000
Cons ci ratio: 1.036300e-01	ci left: 1.117232e-02	ci right 1.240144e-02	k: 1413	n:120000
KS ci ratio: 4.411663e-03	ci left: 8.661389e-01	ci right 8.699767e-01	k: 104168	n:120000
SLC24A2   120000 perm   34 sec   (3543 perm/sec)   p_kst 8.680667e-01   p_cons 1.177500e-02   p_joint 5.223333e-02

Joint ci ratio: 4.988007e-02	ci left: 4.422144e-02	ci right 4.649120e-02	k: 5895	n:130000
Cons ci ratio: 9.083630e-02	ci left: 1.348113e-02	ci right 1.477144e-02	k: 1835	n:130000
KS ci ratio: 4.242948e-03	ci left: 8.659777e-01	ci right 8.696674e-01	k: 112818	n:130000
SLC24A2   130000 perm   37 sec   (3485 perm/sec)   p_kst 8.678308e-01   p_cons 1.411538e-02   p_joint 4.534615e-02

Outputting figure to mutsig2_images.part000000000159/SLC24A2.7_2026_130000_0.86783_0.014115_0.045346.png
                gene_name: SLC24A2
               theta_stop: 0.091 
                    nperm: 130000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.046 

Current progress: 10 percent done.
SLC24A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.544597e-02	ci left: 5.402861e-01	ci right 5.598847e-01	k: 5501	n:10000
KS ci ratio: 1.278569e-02	ci left: 8.979552e-01	ci right 9.096083e-01	k: 9039	n:10000
SLC24A3   10000 perm   2 sec   (5235 perm/sec)   p_kst 9.039000e-01   p_cons 5.501000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC24A3.7_2003_10000_0.9039_0.5501_1.png
                gene_name: SLC24A3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
SLC25A24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.866147e-02	ci left: 6.421684e-01	ci right 6.609432e-01	k: 6516	n:10000
Cons ci ratio: 4.252495e-02	ci left: 4.494958e-01	ci right 4.691280e-01	k: 4593	n:10000
KS ci ratio: 3.777008e-02	ci left: 5.086527e-01	ci right 5.283365e-01	k: 5185	n:10000
SLC25A24   10000 perm   2 sec   (4485 perm/sec)   p_kst 5.185000e-01   p_cons 4.593000e-01   p_joint 6.516000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A24.7_1604_10000_0.5185_0.4593_0.6516.png
                gene_name: SLC25A24
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 14 percent done.
SLC18A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.822146e-02	ci left: 3.881880e-01	ci right 4.074716e-01	k: 3978	n:10000
Cons ci ratio: 3.778521e-02	ci left: 5.084526e-01	ci right 5.281367e-01	k: 5183	n:10000
KS ci ratio: 5.554127e-02	ci left: 3.231670e-01	ci right 3.417307e-01	k: 3324	n:10000
SLC18A3   10000 perm   2 sec   (5556 perm/sec)   p_kst 3.324000e-01   p_cons 5.183000e-01   p_joint 3.978000e-01

Outputting figure to mutsig2_images.part000000000159/SLC18A3.6_1603_10000_0.3324_0.5183_0.3978.png
                gene_name: SLC18A3
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 16 percent done.
SLC1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.855426e-02	ci left: 6.438786e-01	ci right 6.626321e-01	k: 6533	n:10000
Cons ci ratio: 1.878885e-02	ci left: 8.054202e-01	ci right 8.207969e-01	k: 8132	n:10000
KS ci ratio: 4.807086e-02	ci left: 3.896815e-01	ci right 4.089772e-01	k: 3993	n:10000
SLC1A1   10000 perm   2 sec   (5020 perm/sec)   p_kst 3.993000e-01   p_cons 8.132000e-01   p_joint 6.533000e-01

Outputting figure to mutsig2_images.part000000000159/SLC1A1.6_1623_10000_0.3993_0.8132_0.6533.png
                gene_name: SLC1A1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 17 percent done.
SLC22A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.379586e-01	ci left: 6.952474e-02	ci right 7.992463e-02	k: 746	n:10000
Cons ci ratio: 3.869571e-02	ci left: 4.965503e-01	ci right 5.162460e-01	k: 5064	n:10000
KS ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
SLC22A7   10000 perm   2 sec   (5491 perm/sec)   p_kst 2.320000e-02   p_cons 5.064000e-01   p_joint 7.460000e-02

Joint ci ratio: 1.068959e-01	ci left: 5.962273e-02	ci right 6.640500e-02	k: 1259	n:20000
Cons ci ratio: 2.699427e-02	ci left: 5.062464e-01	ci right 5.201498e-01	k: 10264	n:20000
KS ci ratio: 1.831122e-01	ci left: 2.034603e-02	ci right 2.449443e-02	k: 447	n:20000
SLC22A7   20000 perm   4 sec   (4934 perm/sec)   p_kst 2.235000e-02   p_cons 5.132000e-01   p_joint 6.295000e-02

Joint ci ratio: 6.740971e-02	ci left: 9.787494e-02	ci right 1.047358e-01	k: 3038	n:30000
Cons ci ratio: 2.190492e-02	ci left: 5.106271e-01	ci right 5.219698e-01	k: 15489	n:30000
KS ci ratio: 1.466356e-01	ci left: 2.155829e-02	ci right 2.500155e-02	k: 697	n:30000
SLC22A7   30000 perm   6 sec   (4719 perm/sec)   p_kst 2.323333e-02   p_cons 5.163000e-01   p_joint 1.012667e-01

Joint ci ratio: 6.751518e-02	ci left: 7.509482e-02	ci right 8.036668e-02	k: 3108	n:40000
Cons ci ratio: 1.900370e-02	ci left: 5.105140e-01	ci right 5.203338e-01	k: 20617	n:40000
KS ci ratio: 1.269674e-01	ci left: 2.179539e-02	ci right 2.477437e-02	k: 930	n:40000
SLC22A7   40000 perm   9 sec   (4570 perm/sec)   p_kst 2.325000e-02   p_cons 5.154250e-01   p_joint 7.770000e-02

Joint ci ratio: 6.668621e-02	ci left: 6.248035e-02	ci right 6.681036e-02	k: 3231	n:50000
Cons ci ratio: 1.697596e-02	ci left: 5.116688e-01	ci right 5.204493e-01	k: 25803	n:50000
KS ci ratio: 1.140535e-01	ci left: 2.176214e-02	ci right 2.441363e-02	k: 1153	n:50000
SLC22A7   50000 perm   11 sec   (4438 perm/sec)   p_kst 2.306000e-02   p_cons 5.160600e-01   p_joint 6.462000e-02

Joint ci ratio: 6.910418e-02	ci left: 4.913835e-02	ci right 5.267192e-02	k: 3053	n:60000
Cons ci ratio: 1.579571e-02	ci left: 5.025077e-01	ci right 5.105250e-01	k: 30391	n:60000
KS ci ratio: 1.042242e-01	ci left: 2.183157e-02	ci right 2.424820e-02	k: 1381	n:60000
SLC22A7   60000 perm   14 sec   (4329 perm/sec)   p_kst 2.301667e-02   p_cons 5.065167e-01   p_joint 5.088333e-02

Joint ci ratio: 6.141421e-02	ci left: 5.330838e-02	ci right 5.670005e-02	k: 3849	n:70000
Cons ci ratio: 1.431553e-02	ci left: 5.134618e-01	ci right 5.208796e-01	k: 36202	n:70000
KS ci ratio: 9.628938e-02	ci left: 2.201377e-02	ci right 2.425457e-02	k: 1618	n:70000
SLC22A7   70000 perm   17 sec   (4194 perm/sec)   p_kst 2.311429e-02   p_cons 5.171714e-01   p_joint 5.498571e-02

Outputting figure to mutsig2_images.part000000000159/SLC22A7.6_1687_70000_0.023114_0.51717_0.054986.png
                gene_name: SLC22A7
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 19 percent done.
SLC17A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.070962e-02	ci left: 7.735734e-01	ci right 7.898622e-01	k: 7818	n:10000
Cons ci ratio: 3.731132e-02	ci left: 5.147561e-01	ci right 5.344296e-01	k: 5246	n:10000
KS ci ratio: 2.837173e-02	ci left: 6.467962e-01	ci right 6.655127e-01	k: 6562	n:10000
SLC17A9   10000 perm   2 sec   (5502 perm/sec)   p_kst 6.562000e-01   p_cons 5.246000e-01   p_joint 7.818000e-01

Outputting figure to mutsig2_images.part000000000159/SLC17A9.5_1363_10000_0.6562_0.5246_0.7818.png
                gene_name: SLC17A9
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 21 percent done.
SLC22A15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.518144e-01	ci left: 5.773721e-02	ci right 6.731959e-02	k: 624	n:10000
Cons ci ratio: 1.961542e-01	ci left: 3.462345e-02	ci right 4.224845e-02	k: 383	n:10000
KS ci ratio: 6.755301e-02	ci left: 2.433161e-01	ci right 2.604287e-01	k: 2518	n:10000
SLC22A15   10000 perm   2 sec   (5582 perm/sec)   p_kst 2.518000e-01   p_cons 3.830000e-02   p_joint 6.240000e-02

Joint ci ratio: 1.073513e-01	ci left: 5.913530e-02	ci right 6.589257e-02	k: 1249	n:20000
Cons ci ratio: 1.401345e-01	ci left: 3.500605e-02	ci right 4.032945e-02	k: 752	n:20000
KS ci ratio: 4.769166e-02	ci left: 2.464407e-01	ci right 2.585313e-01	k: 5049	n:20000
SLC22A15   20000 perm   4 sec   (4900 perm/sec)   p_kst 2.524500e-01   p_cons 3.760000e-02   p_joint 6.245000e-02

Joint ci ratio: 9.268685e-02	ci left: 5.365288e-02	ci right 5.890013e-02	k: 1687	n:30000
Cons ci ratio: 1.143939e-01	ci left: 3.550805e-02	ci right 3.984874e-02	k: 1129	n:30000
KS ci ratio: 3.802334e-02	ci left: 2.566001e-01	ci right 2.665794e-01	k: 7847	n:30000
SLC22A15   30000 perm   6 sec   (4655 perm/sec)   p_kst 2.615667e-01   p_cons 3.763333e-02   p_joint 5.623333e-02

Joint ci ratio: 6.924480e-02	ci left: 7.160078e-02	ci right 7.676124e-02	k: 2966	n:40000
Cons ci ratio: 9.821357e-02	ci left: 3.641590e-02	ci right 4.020151e-02	k: 1531	n:40000
KS ci ratio: 3.291857e-02	ci left: 2.573973e-01	ci right 2.660373e-01	k: 10468	n:40000
SLC22A15   40000 perm   9 sec   (4497 perm/sec)   p_kst 2.617000e-01   p_cons 3.827500e-02   p_joint 7.415000e-02

Outputting figure to mutsig2_images.part000000000159/SLC22A15.5_1692_40000_0.2617_0.038275_0.07415.png
                gene_name: SLC22A15
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.077 

Current progress: 22 percent done.
SLC22A16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.222604e-02	ci left: 2.751757e-01	ci right 2.929502e-01	k: 2840	n:10000
Cons ci ratio: 1.799302e-02	ci left: 8.184250e-01	ci right 8.333847e-01	k: 8260	n:10000
KS ci ratio: 9.792711e-02	ci left: 1.312962e-01	ci right 1.449153e-01	k: 1380	n:10000
SLC22A16   10000 perm   2 sec   (5626 perm/sec)   p_kst 1.380000e-01   p_cons 8.260000e-01   p_joint 2.840000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A16.5_1766_10000_0.138_0.826_0.284.png
                gene_name: SLC22A16
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 24 percent done.
SLC22A25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.107243e-02	ci left: 1.491353e-01	ci right 1.634655e-01	k: 1562	n:10000
Cons ci ratio: 6.139518e-02	ci left: 2.806233e-01	ci right 2.984994e-01	k: 2895	n:10000
KS ci ratio: 9.947870e-02	ci left: 1.276742e-01	ci right 1.411395e-01	k: 1343	n:10000
SLC22A25   10000 perm   2 sec   (5347 perm/sec)   p_kst 1.343000e-01   p_cons 2.895000e-01   p_joint 1.562000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A25.5_1680_10000_0.1343_0.2895_0.1562.png
                gene_name: SLC22A25
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 26 percent done.
SLC22A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.462753e-01	ci left: 6.207973e-02	ci right 7.197432e-02	k: 669	n:10000
Cons ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
KS ci ratio: 5.705138e-02	ci left: 3.114560e-01	ci right 3.298486e-01	k: 3206	n:10000
SLC22A8   10000 perm   2 sec   (5013 perm/sec)   p_kst 3.206000e-01   p_cons 1.090000e-02   p_joint 6.690000e-02

Joint ci ratio: 1.445823e-01	ci left: 3.288174e-02	ci right 3.805446e-02	k: 708	n:20000
Cons ci ratio: 2.677895e-01	ci left: 9.180527e-03	ci right 1.206441e-02	k: 211	n:20000
KS ci ratio: 3.981053e-02	ci left: 3.199519e-01	ci right 3.329986e-01	k: 6529	n:20000
SLC22A8   20000 perm   4 sec   (4490 perm/sec)   p_kst 3.264500e-01   p_cons 1.055000e-02   p_joint 3.540000e-02

Joint ci ratio: 1.076428e-01	ci left: 4.005018e-02	ci right 4.463898e-02	k: 1269	n:30000
Cons ci ratio: 2.207657e-01	ci left: 9.251451e-03	ci right 1.157816e-02	k: 311	n:30000
KS ci ratio: 3.308795e-02	ci left: 3.134282e-01	ci right 3.240069e-01	k: 9561	n:30000
SLC22A8   30000 perm   7 sec   (4275 perm/sec)   p_kst 3.187000e-01   p_cons 1.036667e-02   p_joint 4.230000e-02

Joint ci ratio: 1.155326e-01	ci left: 2.635654e-02	ci right 2.961247e-02	k: 1118	n:40000
Cons ci ratio: 1.891328e-01	ci left: 9.619560e-03	ci right 1.165242e-02	k: 424	n:40000
KS ci ratio: 2.786789e-02	ci left: 3.263136e-01	ci right 3.355609e-01	k: 13237	n:40000
SLC22A8   40000 perm   10 sec   (4147 perm/sec)   p_kst 3.309250e-01   p_cons 1.060000e-02   p_joint 2.795000e-02

Joint ci ratio: 1.162908e-01	ci left: 2.092638e-02	ci right 2.352950e-02	k: 1110	n:50000
Cons ci ratio: 1.690453e-01	ci left: 9.740023e-03	ci right 1.155746e-02	k: 531	n:50000
KS ci ratio: 2.492074e-02	ci left: 3.268952e-01	ci right 3.351645e-01	k: 16551	n:50000
SLC22A8   50000 perm   12 sec   (4073 perm/sec)   p_kst 3.310200e-01   p_cons 1.062000e-02   p_joint 2.220000e-02

Joint ci ratio: 1.026020e-01	ci left: 2.253011e-02	ci right 2.498292e-02	k: 1424	n:60000
Cons ci ratio: 1.553532e-01	ci left: 9.683790e-03	ci right 1.133074e-02	k: 629	n:60000
KS ci ratio: 2.274976e-02	ci left: 3.272512e-01	ci right 3.347985e-01	k: 19861	n:60000
SLC22A8   60000 perm   15 sec   (3991 perm/sec)   p_kst 3.310167e-01   p_cons 1.048333e-02   p_joint 2.373333e-02

Joint ci ratio: 7.802849e-02	ci left: 3.344047e-02	ci right 3.616969e-02	k: 2435	n:70000
Cons ci ratio: 1.451320e-01	ci left: 9.565265e-03	ci right 1.107574e-02	k: 721	n:70000
KS ci ratio: 2.114352e-02	ci left: 3.258328e-01	ci right 3.328099e-01	k: 23052	n:70000
SLC22A8   70000 perm   18 sec   (3919 perm/sec)   p_kst 3.293143e-01   p_cons 1.030000e-02   p_joint 3.478571e-02

Joint ci ratio: 6.410754e-02	ci left: 4.321679e-02	ci right 4.609135e-02	k: 3571	n:80000
Cons ci ratio: 1.369495e-01	ci left: 9.442829e-03	ci right 1.084304e-02	k: 810	n:80000
KS ci ratio: 2.021018e-02	ci left: 3.166058e-01	ci right 3.230823e-01	k: 25587	n:80000
SLC22A8   80000 perm   21 sec   (3832 perm/sec)   p_kst 3.198375e-01   p_cons 1.012500e-02   p_joint 4.463750e-02

Joint ci ratio: 6.725087e-02	ci left: 3.515305e-02	ci right 3.761028e-02	k: 3273	n:90000
Cons ci ratio: 1.293592e-01	ci left: 9.446261e-03	ci right 1.076338e-02	k: 908	n:90000
KS ci ratio: 1.908382e-02	ci left: 3.161215e-01	ci right 3.222235e-01	k: 28725	n:90000
SLC22A8   90000 perm   24 sec   (3776 perm/sec)   p_kst 3.191667e-01   p_cons 1.008889e-02   p_joint 3.636667e-02

Joint ci ratio: 7.375750e-02	ci left: 2.645586e-02	ci right 2.849167e-02	k: 2746	n:100000
Cons ci ratio: 1.372606e-01	ci left: 7.534434e-03	ci right 8.654380e-03	k: 808	n:100000
KS ci ratio: 1.810732e-02	ci left: 3.162112e-01	ci right 3.219993e-01	k: 31910	n:100000
SLC22A8   100000 perm   27 sec   (3727 perm/sec)   p_kst 3.191000e-01   p_cons 8.080000e-03   p_joint 2.746000e-02

Joint ci ratio: 7.378333e-02	ci left: 2.409430e-02	ci right 2.594904e-02	k: 2751	n:110000
Cons ci ratio: 1.308655e-01	ci left: 7.561167e-03	ci right 8.628650e-03	k: 889	n:110000
KS ci ratio: 1.725206e-02	ci left: 3.166631e-01	ci right 3.221828e-01	k: 35136	n:110000
SLC22A8   110000 perm   30 sec   (3676 perm/sec)   p_kst 3.194182e-01   p_cons 8.081818e-03   p_joint 2.500909e-02

Joint ci ratio: 7.395852e-02	ci left: 2.202831e-02	ci right 2.372819e-02	k: 2744	n:120000
Cons ci ratio: 1.250289e-01	ci left: 7.616751e-03	ci right 8.640567e-03	k: 974	n:120000
KS ci ratio: 1.649712e-02	ci left: 3.173193e-01	ci right 3.226060e-01	k: 38395	n:120000
SLC22A8   120000 perm   33 sec   (3623 perm/sec)   p_kst 3.199583e-01   p_cons 8.116667e-03   p_joint 2.286667e-02

Joint ci ratio: 8.129941e-02	ci left: 1.685445e-02	ci right 1.829026e-02	k: 2283	n:130000
Cons ci ratio: 1.198525e-01	ci left: 7.672141e-03	ci right 8.657680e-03	k: 1060	n:130000
KS ci ratio: 1.582492e-02	ci left: 3.181092e-01	ci right 3.231911e-01	k: 41684	n:130000
SLC22A8   130000 perm   36 sec   (3572 perm/sec)   p_kst 3.206462e-01   p_cons 8.153846e-03   p_joint 1.756154e-02

Joint ci ratio: 8.100948e-02	ci left: 1.578316e-02	ci right 1.712269e-02	k: 2302	n:140000
Cons ci ratio: 1.157287e-01	ci left: 7.657924e-03	ci right 8.605475e-03	k: 1137	n:140000
KS ci ratio: 1.523567e-02	ci left: 3.185903e-01	ci right 3.234886e-01	k: 44945	n:140000
SLC22A8   140000 perm   40 sec   (3521 perm/sec)   p_kst 3.210357e-01   p_cons 8.121429e-03   p_joint 1.644286e-02

Joint ci ratio: 7.667458e-02	ci left: 1.646956e-02	ci right 1.778920e-02	k: 2568	n:150000
Cons ci ratio: 1.118178e-01	ci left: 7.672033e-03	ci right 8.587133e-03	k: 1218	n:150000
KS ci ratio: 1.472478e-02	ci left: 3.185045e-01	ci right 3.232358e-01	k: 48130	n:150000
SLC22A8   150000 perm   43 sec   (3473 perm/sec)   p_kst 3.208667e-01   p_cons 8.120000e-03   p_joint 1.712000e-02

Joint ci ratio: 7.799110e-02	ci left: 1.493716e-02	ci right 1.615549e-02	k: 2486	n:160000
Cons ci ratio: 1.083624e-01	ci left: 7.672686e-03	ci right 8.557777e-03	k: 1297	n:160000
KS ci ratio: 1.427455e-02	ci left: 3.180513e-01	ci right 3.226302e-01	k: 51254	n:160000
SLC22A8   160000 perm   47 sec   (3422 perm/sec)   p_kst 3.203375e-01   p_cons 8.106250e-03   p_joint 1.553750e-02

Joint ci ratio: 6.394252e-02	ci left: 2.093734e-02	ci right 2.232610e-02	k: 3676	n:170000
Cons ci ratio: 1.057521e-01	ci left: 7.593450e-03	ci right 8.446986e-03	k: 1362	n:170000
KS ci ratio: 1.384956e-02	ci left: 3.180821e-01	ci right 3.225240e-01	k: 54451	n:170000
SLC22A8   170000 perm   50 sec   (3368 perm/sec)   p_kst 3.203000e-01   p_cons 8.011765e-03   p_joint 2.162353e-02

Joint ci ratio: 6.710411e-02	ci left: 1.798083e-02	ci right 1.923474e-02	k: 3348	n:180000
Cons ci ratio: 1.027072e-01	ci left: 7.615276e-03	ci right 8.445131e-03	k: 1444	n:180000
KS ci ratio: 1.346039e-02	ci left: 3.181114e-01	ci right 3.224278e-01	k: 57648	n:180000
SLC22A8   180000 perm   54 sec   (3323 perm/sec)   p_kst 3.202667e-01   p_cons 8.022222e-03   p_joint 1.860000e-02

Joint ci ratio: 5.902878e-02	ci left: 2.201418e-02	ci right 2.335833e-02	k: 4309	n:190000
Cons ci ratio: 9.971368e-02	ci left: 7.665916e-03	ci right 8.475516e-03	k: 1532	n:190000
KS ci ratio: 1.308915e-02	ci left: 3.185751e-01	ci right 3.227777e-01	k: 60928	n:190000
SLC22A8   190000 perm   58 sec   (3278 perm/sec)   p_kst 3.206737e-01   p_cons 8.063158e-03   p_joint 2.267895e-02

Outputting figure to mutsig2_images.part000000000159/SLC22A8.5_1669_190000_0.32067_0.0080632_0.022679.png
                gene_name: SLC22A8
               theta_stop: 0.100 
                    nperm: 190000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.0081 
      ci_cons_bounds_left: 0.0077 
     ci_cons_bounds_right: 0.0085 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 28 percent done.
SLC25A31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.797082e-02	ci left: 3.906772e-01	ci right 4.099809e-01	k: 4003	n:10000
KS ci ratio: 1.852255e-02	ci left: 8.097874e-01	ci right 8.250272e-01	k: 8175	n:10000
SLC25A31   10000 perm   2 sec   (6213 perm/sec)   p_kst 8.175000e-01   p_cons 4.003000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC25A31.5_972_10000_0.8175_0.4003_1.png
                gene_name: SLC25A31
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
SLC18A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.321256e-02	ci left: 2.145771e-01	ci right 2.309847e-01	k: 2227	n:10000
Cons ci ratio: 1.030980e-01	ci left: 1.197510e-01	ci right 1.328675e-01	k: 1262	n:10000
KS ci ratio: 8.054346e-02	ci left: 1.837302e-01	ci right 1.992500e-01	k: 1914	n:10000
SLC18A1   10000 perm   2 sec   (5403 perm/sec)   p_kst 1.914000e-01   p_cons 1.262000e-01   p_joint 2.227000e-01

Joint ci ratio: 6.352209e-02	ci left: 1.548452e-01	ci right 1.650539e-01	k: 3198	n:20000
Cons ci ratio: 7.661082e-02	ci left: 1.112981e-01	ci right 1.202140e-01	k: 2314	n:20000
KS ci ratio: 5.726817e-02	ci left: 1.843362e-01	ci right 1.952541e-01	k: 3795	n:20000
SLC18A1   20000 perm   4 sec   (4786 perm/sec)   p_kst 1.897500e-01   p_cons 1.157000e-01   p_joint 1.599000e-01

Outputting figure to mutsig2_images.part000000000159/SLC18A1.4_1638_20000_0.18975_0.1157_0.1599.png
                gene_name: SLC18A1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 31 percent done.
SLC18A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.089156e-02	ci left: 7.705345e-01	ci right 7.869028e-01	k: 7788	n:10000
KS ci ratio: 2.618131e-02	ci left: 6.823426e-01	ci right 7.005457e-01	k: 6915	n:10000
SLC18A2   10000 perm   2 sec   (5765 perm/sec)   p_kst 6.915000e-01   p_cons 7.788000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC18A2.4_1605_10000_0.6915_0.7788_1.png
                gene_name: SLC18A2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
SLC1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.690941e-02	ci left: 5.201603e-01	ci right 5.398222e-01	k: 5300	n:10000
Cons ci ratio: 4.211635e-02	ci left: 4.542871e-01	ci right 4.739338e-01	k: 4641	n:10000
KS ci ratio: 4.555035e-02	ci left: 4.156828e-01	ci right 4.351607e-01	k: 4254	n:10000
SLC1A2   10000 perm   2 sec   (5209 perm/sec)   p_kst 4.254000e-01   p_cons 4.641000e-01   p_joint 5.300000e-01

Outputting figure to mutsig2_images.part000000000159/SLC1A2.4_1769_10000_0.4254_0.4641_0.53.png
                gene_name: SLC1A2
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 34 percent done.
SLC20A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
Cons ci ratio: 2.554502e-02	ci left: 6.928268e-01	ci right 7.108555e-01	k: 7019	n:10000
KS ci ratio: 2.022577e-01	ci left: 3.252956e-02	ci right 3.994377e-02	k: 361	n:10000
SLC20A1   10000 perm   2 sec   (5288 perm/sec)   p_kst 3.610000e-02   p_cons 7.019000e-01   p_joint 1.050000e-01

Joint ci ratio: 8.942667e-02	ci left: 8.371703e-02	ci right 9.160333e-02	k: 1752	n:20000
Cons ci ratio: 1.809591e-02	ci left: 6.947521e-01	ci right 7.074894e-01	k: 14023	n:20000
KS ci ratio: 1.419064e-01	ci left: 3.413670e-02	ci right 3.939908e-02	k: 734	n:20000
SLC20A1   20000 perm   4 sec   (4491 perm/sec)   p_kst 3.670000e-02   p_cons 7.011500e-01   p_joint 8.760000e-02

Joint ci ratio: 7.454203e-02	ci left: 8.124526e-02	ci right 8.756883e-02	k: 2531	n:30000
Cons ci ratio: 1.472781e-02	ci left: 6.972908e-01	ci right 7.076700e-01	k: 21075	n:30000
KS ci ratio: 1.148169e-01	ci left: 3.524875e-02	ci right 3.957476e-02	k: 1121	n:30000
SLC20A1   30000 perm   7 sec   (4291 perm/sec)   p_kst 3.736667e-02   p_cons 7.025000e-01   p_joint 8.436667e-02

Joint ci ratio: 7.942534e-02	ci left: 5.511567e-02	ci right 5.969885e-02	k: 2295	n:40000
Cons ci ratio: 1.274861e-02	ci left: 6.981937e-01	ci right 7.071769e-01	k: 28108	n:40000
KS ci ratio: 9.834715e-02	ci left: 3.631826e-02	ci right 4.009916e-02	k: 1527	n:40000
SLC20A1   40000 perm   10 sec   (4194 perm/sec)   p_kst 3.817500e-02   p_cons 7.027000e-01   p_joint 5.737500e-02

Outputting figure to mutsig2_images.part000000000159/SLC20A1.4_2080_40000_0.038175_0.7027_0.057375.png
                gene_name: SLC20A1
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.060 

Current progress: 36 percent done.
SLC22A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.428899e-02	ci left: 3.332954e-01	ci right 3.519964e-01	k: 3426	n:10000
Cons ci ratio: 1.159567e-02	ci left: 9.140975e-01	ci right 9.248566e-01	k: 9196	n:10000
KS ci ratio: 6.941318e-02	ci left: 2.333353e-01	ci right 2.502154e-01	k: 2417	n:10000
SLC22A10   10000 perm   2 sec   (5827 perm/sec)   p_kst 2.417000e-01   p_cons 9.196000e-01   p_joint 3.426000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A10.4_1666_10000_0.2417_0.9196_0.3426.png
                gene_name: SLC22A10
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 38 percent done.
SLC22A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.856686e-02	ci left: 6.436774e-01	ci right 6.624334e-01	k: 6531	n:10000
Cons ci ratio: 1.199064e-02	ci left: 9.088480e-01	ci right 9.199092e-01	k: 9145	n:10000
KS ci ratio: 4.108126e-02	ci left: 4.666691e-01	ci right 4.863446e-01	k: 4765	n:10000
SLC22A11   10000 perm   2 sec   (5005 perm/sec)   p_kst 4.765000e-01   p_cons 9.145000e-01   p_joint 6.531000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A11.4_1693_10000_0.4765_0.9145_0.6531.png
                gene_name: SLC22A11
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 40 percent done.
SLC22A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.149680e-02	ci left: 7.604092e-01	ci right 7.770340e-01	k: 7688	n:10000
Cons ci ratio: 2.661160e-02	ci left: 6.752890e-01	ci right 6.936034e-01	k: 6845	n:10000
KS ci ratio: 3.389067e-02	ci left: 5.624330e-01	ci right 5.819249e-01	k: 5722	n:10000
SLC22A14   10000 perm   2 sec   (5665 perm/sec)   p_kst 5.722000e-01   p_cons 6.845000e-01   p_joint 7.688000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A14.4_1825_10000_0.5722_0.6845_0.7688.png
                gene_name: SLC22A14
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 41 percent done.
SLC22A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.626257e-02	ci left: 5.289696e-01	ci right 5.486078e-01	k: 5388	n:10000
Cons ci ratio: 6.814967e-02	ci left: 2.400544e-01	ci right 2.570923e-01	k: 2485	n:10000
KS ci ratio: 2.928904e-02	ci left: 6.322118e-01	ci right 6.511057e-01	k: 6417	n:10000
SLC22A6   10000 perm   2 sec   (5969 perm/sec)   p_kst 6.417000e-01   p_cons 2.485000e-01   p_joint 5.388000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A6.4_1732_10000_0.6417_0.2485_0.5388.png
                gene_name: SLC22A6
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 43 percent done.
SLC24A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.357332e-02	ci left: 7.256263e-01	ci right 7.430370e-01	k: 7344	n:10000
Cons ci ratio: 3.477092e-02	ci left: 5.498039e-01	ci right 5.693614e-01	k: 5596	n:10000
KS ci ratio: 3.478503e-02	ci left: 5.496035e-01	ci right 5.691619e-01	k: 5594	n:10000
SLC24A5   10000 perm   2 sec   (6119 perm/sec)   p_kst 5.594000e-01   p_cons 5.596000e-01   p_joint 7.344000e-01

Outputting figure to mutsig2_images.part000000000159/SLC24A5.4_1539_10000_0.5594_0.5596_0.7344.png
                gene_name: SLC24A5
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 45 percent done.
SLC25A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.347064e-02	ci left: 7.273436e-01	ci right 7.447187e-01	k: 7361	n:10000
Cons ci ratio: 5.013582e-02	ci left: 3.697763e-01	ci right 3.888940e-01	k: 3793	n:10000
KS ci ratio: 1.933096e-02	ci left: 7.964874e-01	ci right 8.121349e-01	k: 8044	n:10000
SLC25A14   10000 perm   2 sec   (5844 perm/sec)   p_kst 8.044000e-01   p_cons 3.793000e-01   p_joint 7.361000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A14.4_1018_10000_0.8044_0.3793_0.7361.png
                gene_name: SLC25A14
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 47 percent done.
SLC25A28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.273467e-02	ci left: 2.719080e-01	ci right 2.896199e-01	k: 2807	n:10000
Cons ci ratio: 1.650160e-02	ci left: 8.423403e-01	ci right 8.564555e-01	k: 8495	n:10000
KS ci ratio: 1.020373e-01	ci left: 1.219999e-01	ci right 1.352172e-01	k: 1285	n:10000
SLC25A28   10000 perm   2 sec   (5669 perm/sec)   p_kst 1.285000e-01   p_cons 8.495000e-01   p_joint 2.807000e-01

Joint ci ratio: 4.547915e-02	ci left: 2.646501e-01	ci right 2.770166e-01	k: 5416	n:20000
Cons ci ratio: 1.169731e-02	ci left: 8.438101e-01	ci right 8.537883e-01	k: 16977	n:20000
KS ci ratio: 7.210431e-02	ci left: 1.240883e-01	ci right 1.334200e-01	k: 2574	n:20000
SLC25A28   20000 perm   4 sec   (4929 perm/sec)   p_kst 1.287000e-01   p_cons 8.488500e-01   p_joint 2.708000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A28.4_1111_20000_0.1287_0.84885_0.2708.png
                gene_name: SLC25A28
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 48 percent done.
SLC19A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.491176e-02	ci left: 7.033165e-01	ci right 7.211597e-01	k: 7123	n:10000
KS ci ratio: 2.696332e-02	ci left: 6.695471e-01	ci right 6.879487e-01	k: 6788	n:10000
SLC19A2   10000 perm   2 sec   (6043 perm/sec)   p_kst 6.788000e-01   p_cons 7.123000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC19A2.3_1518_10000_0.6788_0.7123_1.png
                gene_name: SLC19A2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
SLC1A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.484027e-02	ci left: 4.233590e-01	ci right 4.428800e-01	k: 4331	n:10000
Cons ci ratio: 2.861100e-02	ci left: 6.429732e-01	ci right 6.617380e-01	k: 6524	n:10000
KS ci ratio: 5.287355e-02	ci left: 3.452172e-01	ci right 3.640676e-01	k: 3546	n:10000
SLC1A5   10000 perm   2 sec   (5896 perm/sec)   p_kst 3.546000e-01   p_cons 6.524000e-01   p_joint 4.331000e-01

Outputting figure to mutsig2_images.part000000000159/SLC1A5.3_1665_10000_0.3546_0.6524_0.4331.png
                gene_name: SLC1A5
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 52 percent done.
SLC22A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.131130e-02	ci left: 9.178069e-01	ci right 9.283451e-01	k: 9232	n:10000
KS ci ratio: 1.828014e-02	ci left: 8.137498e-01	ci right 8.288626e-01	k: 8214	n:10000
SLC22A1   10000 perm   2 sec   (6368 perm/sec)   p_kst 8.214000e-01   p_cons 9.232000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC22A1.3_1709_10000_0.8214_0.9232_1.png
                gene_name: SLC22A1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
SLC22A13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.771079e-02	ci left: 8.230004e-01	ci right 8.378066e-01	k: 8305	n:10000
Cons ci ratio: 4.562496e-02	ci left: 4.148854e-01	ci right 4.343585e-01	k: 4246	n:10000
KS ci ratio: 3.493343e-02	ci left: 5.474992e-01	ci right 5.670674e-01	k: 5573	n:10000
SLC22A13   10000 perm   2 sec   (5929 perm/sec)   p_kst 5.573000e-01   p_cons 4.246000e-01   p_joint 8.305000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A13.3_1696_10000_0.5573_0.4246_0.8305.png
                gene_name: SLC22A13
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 55 percent done.
SLC22A23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.491338e-02	ci left: 4.225613e-01	ci right 4.420781e-01	k: 4323	n:10000
Cons ci ratio: 2.082487e-02	ci left: 7.716487e-01	ci right 7.879880e-01	k: 7799	n:10000
KS ci ratio: 6.461939e-02	ci left: 2.602281e-01	ci right 2.777067e-01	k: 2689	n:10000
SLC22A23   10000 perm   2 sec   (5281 perm/sec)   p_kst 2.689000e-01   p_cons 7.799000e-01   p_joint 4.323000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A23.3_2101_10000_0.2689_0.7799_0.4323.png
                gene_name: SLC22A23
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 57 percent done.
SLC22A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.881014e-02	ci left: 3.824141e-01	ci right 4.016488e-01	k: 3920	n:10000
Cons ci ratio: 2.807683e-02	ci left: 6.515256e-01	ci right 6.701806e-01	k: 6609	n:10000
KS ci ratio: 7.396041e-02	ci left: 2.111242e-01	ci right 2.274396e-01	k: 2192	n:10000
SLC22A3   10000 perm   2 sec   (5872 perm/sec)   p_kst 2.192000e-01   p_cons 6.609000e-01   p_joint 3.920000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A3.3_1715_10000_0.2192_0.6609_0.392.png
                gene_name: SLC22A3
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 59 percent done.
SLC25A17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.406905e-02	ci left: 7.173453e-01	ci right 7.349227e-01	k: 7262	n:10000
Cons ci ratio: 9.008395e-02	ci left: 1.519811e-01	ci right 1.664180e-01	k: 1591	n:10000
KS ci ratio: 4.269655e-02	ci left: 4.474996e-01	ci right 4.671253e-01	k: 4573	n:10000
SLC25A17   10000 perm   2 sec   (6457 perm/sec)   p_kst 4.573000e-01   p_cons 1.591000e-01   p_joint 7.262000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A17.3_960_10000_0.4573_0.1591_0.7262.png
                gene_name: SLC25A17
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 60 percent done.
SLC25A18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.461939e-02	ci left: 2.602281e-01	ci right 2.777067e-01	k: 2689	n:10000
Cons ci ratio: 6.890587e-02	ci left: 2.360028e-01	ci right 2.529463e-01	k: 2444	n:10000
KS ci ratio: 9.302001e-02	ci left: 1.437406e-01	ci right 1.578635e-01	k: 1507	n:10000
SLC25A18   10000 perm   2 sec   (5622 perm/sec)   p_kst 1.507000e-01   p_cons 2.444000e-01   p_joint 2.689000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A18.3_984_10000_0.1507_0.2444_0.2689.png
                gene_name: SLC25A18
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 62 percent done.
SLC25A25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.185224e-02	ci left: 9.107001e-01	ci right 9.216561e-01	k: 9163	n:10000
Cons ci ratio: 1.756598e-02	ci left: 8.253397e-01	ci right 8.400660e-01	k: 8328	n:10000
KS ci ratio: 2.266795e-02	ci left: 7.407845e-01	ci right 7.578701e-01	k: 7494	n:10000
SLC25A25   10000 perm   2 sec   (5589 perm/sec)   p_kst 7.494000e-01   p_cons 8.328000e-01   p_joint 9.163000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A25.3_1938_10000_0.7494_0.8328_0.9163.png
                gene_name: SLC25A25
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 64 percent done.
SLC25A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.470359e-02	ci left: 4.248546e-01	ci right 4.443835e-01	k: 4346	n:10000
Cons ci ratio: 1.113278e-01	ci left: 1.041267e-01	ci right 1.165013e-01	k: 1102	n:10000
KS ci ratio: 3.860295e-02	ci left: 4.977503e-01	ci right 5.174453e-01	k: 5076	n:10000
SLC25A3   10000 perm   2 sec   (6341 perm/sec)   p_kst 5.076000e-01   p_cons 1.102000e-01   p_joint 4.346000e-01

Joint ci ratio: 3.371621e-02	ci left: 3.964409e-01	ci right 4.100872e-01	k: 8065	n:20000
Cons ci ratio: 7.830386e-02	ci left: 1.069730e-01	ci right 1.157403e-01	k: 2226	n:20000
KS ci ratio: 2.700778e-02	ci left: 5.059963e-01	ci right 5.198999e-01	k: 10259	n:20000
SLC25A3   20000 perm   4 sec   (5369 perm/sec)   p_kst 5.129500e-01   p_cons 1.113000e-01   p_joint 4.032500e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A3.3_1243_20000_0.51295_0.1113_0.40325.png
                gene_name: SLC25A3
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 66 percent done.
SLC25A40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.408154e-02	ci left: 2.634937e-01	ci right 2.810391e-01	k: 2722	n:10000
Cons ci ratio: 6.635571e-02	ci left: 2.500393e-01	ci right 2.673015e-01	k: 2586	n:10000
KS ci ratio: 9.048988e-02	ci left: 1.508034e-01	ci right 1.651964e-01	k: 1579	n:10000
SLC25A40   10000 perm   2 sec   (6521 perm/sec)   p_kst 1.579000e-01   p_cons 2.586000e-01   p_joint 2.722000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A40.3_1057_10000_0.1579_0.2586_0.2722.png
                gene_name: SLC25A40
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 67 percent done.
SLC25A43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.882593e-02	ci left: 8.048110e-01	ci right 8.202065e-01	k: 8126	n:10000
KS ci ratio: 1.954562e-02	ci left: 7.929363e-01	ci right 8.086881e-01	k: 8009	n:10000
SLC25A43   10000 perm   2 sec   (6573 perm/sec)   p_kst 8.009000e-01   p_cons 8.126000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC25A43.3_1046_10000_0.8009_0.8126_1.png
                gene_name: SLC25A43
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
SLC26A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.986017e-02	ci left: 3.723630e-01	ci right 3.915058e-01	k: 3819	n:10000
Cons ci ratio: 8.588454e-02	ci left: 1.649446e-01	ci right 1.798468e-01	k: 1723	n:10000
KS ci ratio: 6.523286e-02	ci left: 2.565673e-01	ci right 2.739696e-01	k: 2652	n:10000
SLC26A10   10000 perm   2 sec   (6429 perm/sec)   p_kst 2.652000e-01   p_cons 1.723000e-01   p_joint 3.819000e-01

Outputting figure to mutsig2_images.part000000000159/SLC26A10.3_1748_10000_0.2652_0.1723_0.3819.png
                gene_name: SLC26A10
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 71 percent done.
SLC19A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.916501e-02	ci left: 7.992275e-01	ci right 8.147933e-01	k: 8071	n:10000
KS ci ratio: 3.213668e-02	ci left: 5.883129e-01	ci right 6.076300e-01	k: 5980	n:10000
SLC19A3   10000 perm   2 sec   (6205 perm/sec)   p_kst 5.980000e-01   p_cons 8.071000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC19A3.2_1511_10000_0.598_0.8071_1.png
                gene_name: SLC19A3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
SLC1A7
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 74 percent done.
SLC20A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.011016e-02	ci left: 9.327839e-01	ci right 9.423592e-01	k: 9377	n:10000
Cons ci ratio: 3.302639e-02	ci left: 5.750686e-01	ci right 5.944820e-01	k: 5848	n:10000
KS ci ratio: 6.560300e-02	ci left: 2.543910e-01	ci right 2.717472e-01	k: 2630	n:10000
SLC20A2   10000 perm   2 sec   (5838 perm/sec)   p_kst 2.630000e-01   p_cons 5.848000e-01   p_joint 9.377000e-01

Outputting figure to mutsig2_images.part000000000159/SLC20A2.2_1999_10000_0.263_0.5848_0.9377.png
                gene_name: SLC20A2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 76 percent done.
SLC22A17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.532928e-02	ci left: 8.605959e-01	ci right 8.739894e-01	k: 8674	n:10000
Cons ci ratio: 3.364216e-02	ci left: 5.660425e-01	ci right 5.855133e-01	k: 5758	n:10000
KS ci ratio: 2.817710e-02	ci left: 6.499155e-01	ci right 6.685916e-01	k: 6593	n:10000
SLC22A17   10000 perm   2 sec   (6097 perm/sec)   p_kst 6.593000e-01   p_cons 5.758000e-01   p_joint 8.674000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A17.2_1653_10000_0.6593_0.5758_0.8674.png
                gene_name: SLC22A17
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 78 percent done.
SLC22A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.101891e-02	ci left: 6.052801e-01	ci right 6.244529e-01	k: 6149	n:10000
Cons ci ratio: 4.980742e-02	ci left: 3.728605e-01	ci right 3.920080e-01	k: 3824	n:10000
KS ci ratio: 7.376657e-02	ci left: 2.120120e-01	ci right 2.283513e-01	k: 2201	n:10000
SLC22A4   10000 perm   2 sec   (6088 perm/sec)   p_kst 2.201000e-01   p_cons 3.824000e-01   p_joint 6.149000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A4.2_1696_10000_0.2201_0.3824_0.6149.png
                gene_name: SLC22A4
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.62 

Current progress: 79 percent done.
SLC22A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.779278e-02	ci left: 5.083526e-01	ci right 5.280368e-01	k: 5182	n:10000
Cons ci ratio: 3.712477e-02	ci left: 5.172579e-01	ci right 5.369263e-01	k: 5271	n:10000
KS ci ratio: 8.125263e-02	ci left: 1.810727e-01	ci right 1.965090e-01	k: 1887	n:10000
SLC22A9   10000 perm   2 sec   (5946 perm/sec)   p_kst 1.887000e-01   p_cons 5.271000e-01   p_joint 5.182000e-01

Outputting figure to mutsig2_images.part000000000159/SLC22A9.2_1702_10000_0.1887_0.5271_0.5182.png
                gene_name: SLC22A9
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 81 percent done.
SLC23A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.637988e-02	ci left: 4.069129e-01	ci right 4.263357e-01	k: 4166	n:10000
Cons ci ratio: 3.165769e-02	ci left: 5.955400e-01	ci right 6.147987e-01	k: 6052	n:10000
KS ci ratio: 6.048275e-02	ci left: 2.867661e-01	ci right 3.047530e-01	k: 2957	n:10000
SLC23A1   10000 perm   2 sec   (6075 perm/sec)   p_kst 2.957000e-01   p_cons 6.052000e-01   p_joint 4.166000e-01

Outputting figure to mutsig2_images.part000000000159/SLC23A1.2_1865_10000_0.2957_0.6052_0.4166.png
                gene_name: SLC23A1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 83 percent done.
SLC24A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.709323e-02	ci left: 6.674321e-01	ci right 6.858649e-01	k: 6767	n:10000
Cons ci ratio: 5.477448e-02	ci left: 3.293229e-01	ci right 3.479712e-01	k: 3386	n:10000
KS ci ratio: 3.358024e-02	ci left: 5.669450e-01	ci right 5.864103e-01	k: 5767	n:10000
SLC24A1   10000 perm   2 sec   (5322 perm/sec)   p_kst 5.767000e-01   p_cons 3.386000e-01   p_joint 6.767000e-01

Outputting figure to mutsig2_images.part000000000159/SLC24A1.2_3337_10000_0.5767_0.3386_0.6767.png
                gene_name: SLC24A1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 84 percent done.
SLC24A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.246439e-03	ci left: 9.535696e-01	ci right 9.615610e-01	k: 9577	n:10000
Cons ci ratio: 4.305957e-02	ci left: 4.433082e-01	ci right 4.629191e-01	k: 4531	n:10000
KS ci ratio: 3.705039e-02	ci left: 5.182587e-01	ci right 5.379249e-01	k: 5281	n:10000
SLC24A4   10000 perm   2 sec   (5882 perm/sec)   p_kst 5.281000e-01   p_cons 4.531000e-01   p_joint 9.577000e-01

Outputting figure to mutsig2_images.part000000000159/SLC24A4.2_1886_10000_0.5281_0.4531_0.9577.png
                gene_name: SLC24A4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 86 percent done.
SLC24A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.532304e-01	ci left: 2.043278e-02	ci right 2.644926e-02	k: 233	n:10000
Cons ci ratio: 2.816585e-01	ci left: 1.632191e-02	ci right 2.176339e-02	k: 189	n:10000
KS ci ratio: 1.365061e-02	ci left: 8.856497e-01	ci right 8.979211e-01	k: 8919	n:10000
SLC24A6   10000 perm   2 sec   (5954 perm/sec)   p_kst 8.919000e-01   p_cons 1.890000e-02   p_joint 2.330000e-02

Joint ci ratio: 6.150794e-02	ci left: 1.635828e-01	ci right 1.740137e-01	k: 3375	n:20000
Cons ci ratio: 1.911204e-01	ci left: 1.862872e-02	ci right 2.261236e-02	k: 411	n:20000
KS ci ratio: 9.631181e-03	ci left: 8.879215e-01	ci right 8.965641e-01	k: 17846	n:20000
SLC24A6   20000 perm   4 sec   (5066 perm/sec)   p_kst 8.923000e-01   p_cons 2.055000e-02   p_joint 1.687500e-01

Joint ci ratio: 1.026764e-01	ci left: 4.394952e-02	ci right 4.873883e-02	k: 1389	n:30000
Cons ci ratio: 1.555373e-01	ci left: 1.911875e-02	ci right 2.237499e-02	k: 621	n:30000
KS ci ratio: 7.856669e-03	ci left: 8.889064e-01	ci right 8.959508e-01	k: 26774	n:30000
SLC24A6   30000 perm   6 sec   (4699 perm/sec)   p_kst 8.924667e-01   p_cons 2.070000e-02   p_joint 4.630000e-02

Joint ci ratio: 9.912541e-02	ci left: 3.575694e-02	ci right 3.951056e-02	k: 1504	n:40000
Cons ci ratio: 1.338236e-01	ci left: 1.959304e-02	ci right 2.242710e-02	k: 839	n:40000
KS ci ratio: 6.818686e-03	ci left: 8.889679e-01	ci right 8.950750e-01	k: 35682	n:40000
SLC24A6   40000 perm   9 sec   (4518 perm/sec)   p_kst 8.920500e-01   p_cons 2.097500e-02   p_joint 3.760000e-02

Joint ci ratio: 5.771045e-02	ci left: 8.203677e-02	ci right 8.693160e-02	k: 4223	n:50000
Cons ci ratio: 1.196957e-01	ci left: 1.974166e-02	ci right 2.227438e-02	k: 1049	n:50000
KS ci ratio: 6.099690e-03	ci left: 8.892669e-01	ci right 8.947275e-01	k: 44601	n:50000
SLC24A6   50000 perm   11 sec   (4379 perm/sec)   p_kst 8.920200e-01   p_cons 2.098000e-02   p_joint 8.446000e-02

Joint ci ratio: 8.143381e-02	ci left: 3.566711e-02	ci right 3.871120e-02	k: 2230	n:60000
Cons ci ratio: 1.099372e-01	ci left: 1.960809e-02	ci right 2.190526e-02	k: 1244	n:60000
KS ci ratio: 5.573575e-03	ci left: 8.893208e-01	ci right 8.943079e-01	k: 53510	n:60000
SLC24A6   60000 perm   14 sec   (4270 perm/sec)   p_kst 8.918333e-01   p_cons 2.073333e-02   p_joint 3.716667e-02

Joint ci ratio: 8.223104e-02	ci left: 3.014839e-02	ci right 3.274778e-02	k: 2200	n:70000
Cons ci ratio: 1.017643e-01	ci left: 1.969981e-02	ci right 2.182589e-02	k: 1452	n:70000
KS ci ratio: 5.167861e-03	ci left: 8.892159e-01	ci right 8.938373e-01	k: 62408	n:70000
SLC24A6   70000 perm   17 sec   (4173 perm/sec)   p_kst 8.915429e-01   p_cons 2.074286e-02   p_joint 3.142857e-02

Joint ci ratio: 6.412634e-02	ci left: 4.319218e-02	ci right 4.606596e-02	k: 3569	n:80000
Cons ci ratio: 9.544373e-02	ci left: 1.966351e-02	ci right 2.164647e-02	k: 1651	n:80000
KS ci ratio: 4.827953e-03	ci left: 8.896144e-01	ci right 8.939322e-01	k: 71343	n:80000
SLC24A6   80000 perm   20 sec   (4061 perm/sec)   p_kst 8.917875e-01   p_cons 2.063750e-02   p_joint 4.461250e-02

Outputting figure to mutsig2_images.part000000000159/SLC24A6.2_1815_80000_0.89179_0.020637_0.044612.png
                gene_name: SLC24A6
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.043 
    ci_joint_bounds_right: 0.046 

Current progress: 88 percent done.
SLC25A15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.905341e-02	ci left: 1.286530e-01	ci right 1.421602e-01	k: 1353	n:10000
Cons ci ratio: 2.624881e-02	ci left: 6.812340e-01	ci right 6.994550e-01	k: 6904	n:10000
KS ci ratio: 1.714031e-01	ci left: 4.542628e-02	ci right 5.403844e-02	k: 496	n:10000
SLC25A15   10000 perm   1 sec   (6739 perm/sec)   p_kst 4.960000e-02   p_cons 6.904000e-01   p_joint 1.353000e-01

Joint ci ratio: 5.039632e-02	ci left: 2.263625e-01	ci right 2.381155e-01	k: 4644	n:20000
Cons ci ratio: 1.873948e-02	ci left: 6.798177e-01	ci right 6.927281e-01	k: 13726	n:20000
KS ci ratio: 1.201260e-01	ci left: 4.750575e-02	ci right 5.362575e-02	k: 1010	n:20000
SLC25A15   20000 perm   3 sec   (5766 perm/sec)   p_kst 5.050000e-02   p_cons 6.863000e-01   p_joint 2.322000e-01

Joint ci ratio: 3.902633e-02	ci left: 2.467304e-01	ci right 2.565844e-01	k: 7549	n:30000
Cons ci ratio: 1.531628e-02	ci left: 6.805797e-01	ci right 6.911176e-01	k: 20576	n:30000
KS ci ratio: 9.732508e-02	ci left: 4.879794e-02	ci right 5.382274e-02	k: 1538	n:30000
SLC25A15   30000 perm   6 sec   (5420 perm/sec)   p_kst 5.126667e-02   p_cons 6.858667e-01   p_joint 2.516333e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A15.2_930_30000_0.051267_0.68587_0.25163.png
                gene_name: SLC25A15
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 90 percent done.
SLC25A16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.977813e-02	ci left: 7.890818e-01	ci right 8.049448e-01	k: 7971	n:10000
Cons ci ratio: 7.314920e-02	ci left: 2.148731e-01	ci right 2.312886e-01	k: 2230	n:10000
KS ci ratio: 4.619910e-02	ci left: 4.088062e-01	ci right 4.282413e-01	k: 4185	n:10000
SLC25A16   10000 perm   2 sec   (6364 perm/sec)   p_kst 4.185000e-01   p_cons 2.230000e-01   p_joint 7.971000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A16.2_1035_10000_0.4185_0.223_0.7971.png
                gene_name: SLC25A16
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 91 percent done.
SLC25A20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.352362e-03	ci left: 9.623645e-01	ci right 9.695607e-01	k: 9661	n:10000
Cons ci ratio: 2.258952e-02	ci left: 7.420988e-01	ci right 7.591550e-01	k: 7507	n:10000
KS ci ratio: 5.282739e-02	ci left: 3.456147e-01	ci right 3.644699e-01	k: 3550	n:10000
SLC25A20   10000 perm   2 sec   (6554 perm/sec)   p_kst 3.550000e-01   p_cons 7.507000e-01   p_joint 9.661000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A20.2_942_10000_0.355_0.7507_0.9661.png
                gene_name: SLC25A20
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 93 percent done.
SLC25A30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.706525e-02	ci left: 5.180585e-01	ci right 5.377252e-01	k: 5279	n:10000
Cons ci ratio: 4.975474e-02	ci left: 3.733580e-01	ci right 3.925103e-01	k: 3829	n:10000
KS ci ratio: 1.554271e-01	ci left: 5.513502e-02	ci right 6.452344e-02	k: 597	n:10000
SLC25A30   10000 perm   1 sec   (6970 perm/sec)   p_kst 5.970000e-02   p_cons 3.829000e-01   p_joint 5.279000e-01

Joint ci ratio: 6.924610e-02	ci left: 1.332972e-01	ci right 1.429083e-01	k: 2761	n:20000
Cons ci ratio: 3.522641e-02	ci left: 3.756075e-01	ci right 3.891267e-01	k: 7647	n:20000
KS ci ratio: 1.101510e-01	ci left: 5.626075e-02	ci right 6.286802e-02	k: 1190	n:20000
SLC25A30   20000 perm   3 sec   (5910 perm/sec)   p_kst 5.950000e-02   p_cons 3.823500e-01   p_joint 1.380500e-01

Joint ci ratio: 5.661088e-02	ci left: 1.338851e-01	ci right 1.417185e-01	k: 4133	n:30000
Cons ci ratio: 2.877843e-02	ci left: 3.765966e-01	ci right 3.876263e-01	k: 11463	n:30000
KS ci ratio: 8.944716e-02	ci left: 5.746920e-02	ci right 6.288303e-02	k: 1804	n:30000
SLC25A30   30000 perm   5 sec   (5465 perm/sec)   p_kst 6.013333e-02   p_cons 3.821000e-01   p_joint 1.377667e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A30.2_912_30000_0.060133_0.3821_0.13777.png
                gene_name: SLC25A30
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 95 percent done.
SLC25A36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.640851e-02	ci left: 4.066140e-01	ci right 4.260348e-01	k: 4163	n:10000
KS ci ratio: 1.420320e-02	ci left: 8.775616e-01	ci right 8.902138e-01	k: 8840	n:10000
SLC25A36   10000 perm   2 sec   (6480 perm/sec)   p_kst 8.840000e-01   p_cons 4.163000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC25A36.2_964_10000_0.884_0.4163_1.png
                gene_name: SLC25A36
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
SLC25A44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.183680e-02	ci left: 9.109059e-01	ci right 9.218501e-01	k: 9165	n:10000
Cons ci ratio: 2.022950e-02	ci left: 7.815789e-01	ci right 7.976520e-01	k: 7897	n:10000
KS ci ratio: 1.673316e-02	ci left: 8.386731e-01	ci right 8.529249e-01	k: 8459	n:10000
SLC25A44   10000 perm   2 sec   (6522 perm/sec)   p_kst 8.459000e-01   p_cons 7.897000e-01   p_joint 9.165000e-01

Outputting figure to mutsig2_images.part000000000159/SLC25A44.2_957_10000_0.8459_0.7897_0.9165.png
                gene_name: SLC25A44
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 98 percent done.
SLC25A46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.746352e-02	ci left: 2.438103e-01	ci right 2.609341e-01	k: 2523	n:10000
KS ci ratio: 2.264382e-02	ci left: 7.411889e-01	ci right 7.582654e-01	k: 7498	n:10000
SLC25A46   10000 perm   2 sec   (6339 perm/sec)   p_kst 7.498000e-01   p_cons 2.523000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000159/SLC25A46.2_1289_10000_0.7498_0.2523_1.png
                gene_name: SLC25A46
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000159
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 159 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1641>
Subject: Job 9894137: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1641>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000160> was used as the working directory.
Started at Sat Oct  6 00:29:44 2012
Results reported at Sat Oct  6 00:47:21 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000160.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000160.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 160  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000160.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1093.20 sec.
    Max Memory :      3632 MB
    Max Swap   :      6004 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
160
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 160
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 160: processing genes 14335 - 14424
Calculating significance of each gene.
Using projection method.
14335	SLC26A11	6.872846e-01
14336	SLC26A2	5.397944e-01
14337	SLC26A3	7.048938e-01
14338	SLC26A4	8.043439e-01
14339	SLC26A5	1.350974e-01
14340	SLC26A6	1
14341	SLC26A7	1.480490e-02
14342	SLC26A8	7.320309e-01
14343	SLC26A9	2.363027e-01
14344	SLC27A1	9.616203e-01
14345	SLC27A2	5.413765e-01
14346	SLC27A3	9.965052e-01
14347	SLC27A4	9.689478e-01
14348	SLC27A5	7.900319e-01
14349	SLC27A6	7.975546e-02
14350	SLC28A1	4.718808e-01
14351	SLC28A2	5.659705e-01
14352	SLC28A3	2.474856e-01
14353	SLC29A1	8.691794e-01
14354	SLC29A2	8.534661e-01
14355	SLC29A3	4.453825e-01
14356	SLC29A4	9.270620e-01
14357	SLC2A1	8.399847e-01
14358	SLC2A10	8.082927e-02
14359	SLC2A11	1
14360	SLC2A12	6.251715e-01
14361	SLC2A13	4.401444e-01
14362	SLC2A14	8.627419e-02
14363	SLC2A2	1.960809e-01
14364	SLC2A3	7.960179e-01
14365	SLC2A4	4.706492e-01
14366	SLC2A4RG	1
14367	SLC2A5	2.435301e-01
14368	SLC2A6	9.359297e-01
14369	SLC2A7	1.486380e-02
14370	SLC2A8	7.563034e-01
14371	SLC2A9	2.025987e-01
14372	SLC30A1	5.984134e-01
14373	SLC30A10	7.670656e-01
14374	SLC30A2	1
14375	SLC30A3	2.058663e-01
14376	SLC30A4	5.313889e-01
14377	SLC30A5	6.506002e-01
14378	SLC30A6	4.489065e-01
14379	SLC30A7	8.202333e-01
14380	SLC30A8	6.063180e-03
14381	SLC30A9	5.013562e-02
14382	SLC31A1	5.080197e-01
14383	SLC31A2	3.170422e-01
14384	SLC32A1	1.205083e-01
14385	SLC33A1	8.297167e-01
14386	SLC34A1	9.165409e-01
14387	SLC34A2	1.868793e-01
14388	SLC34A3	1
14389	SLC35A1	1.248543e-01
14390	SLC35A2	7.581253e-01
14391	SLC35A3	2.772666e-01
14392	SLC35A4	2.934393e-01
14393	SLC35A5	8.670007e-01
14394	SLC35B1	6.851202e-01
In gene SLC35B2 the following bins exceed PROBCAP:
    COAD-AA-A017	categ 6	N = 1300    n = 1	mu =   2.63e-07
14395	SLC35B2	4.153104e-01
14396	SLC35B3	8.246351e-02
14397	SLC35B4	7.133690e-01
14398	SLC35C1	1
14399	SLC35C2	4.788612e-01
14400	SLC35D1	2.875992e-01
14401	SLC35D2	1.063862e-01
14402	SLC35D3	4.828140e-01
14403	SLC35E1	1.547816e-02
14404	SLC35E3	5.400575e-01
14405	SLC35E4	7.255339e-01
14406	SLC35F1	1.409645e-01
14407	SLC35F2	1
14408	SLC35F3	4.667795e-02
14409	SLC35F4	7.616606e-01
14410	SLC35F5	1
14411	SLC36A1	1
14412	SLC36A2	5.109393e-01
14413	SLC36A3	7.049400e-01
14414	SLC36A4	2.015691e-01
14415	SLC37A1	7.919285e-01
14416	SLC37A2	5.739588e-01
14417	SLC37A3	1.963351e-01
14418	SLC37A4	5.590650e-01
14419	SLC38A1	1.925276e-01
14420	SLC38A10	9.994552e-01
14421	SLC38A11	2.825188e-01
14422	SLC38A2	7.088149e-01
14423	SLC38A3	7.069177e-01
14424	SLC38A4	8.062112e-01
Done

Running MutSig 2:
Scatter job 160: processing genes 14335 - 14424
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SLC27A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.332647e-02	ci left: 5.706554e-01	ci right 5.900977e-01	k: 5804	n:10000
Cons ci ratio: 2.169017e-02	ci left: 7.571705e-01	ci right 7.738746e-01	k: 7656	n:10000
KS ci ratio: 5.069396e-02	ci left: 3.646037e-01	ci right 3.836696e-01	k: 3741	n:10000
SLC27A6   10000 perm   2 sec   (5210 perm/sec)   p_kst 3.741000e-01   p_cons 7.656000e-01   p_joint 5.804000e-01

Outputting figure to mutsig2_images.part000000000160/SLC27A6.9_1900_10000_0.3741_0.7656_0.5804.png
                gene_name: SLC27A6
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 2 percent done.
SLC2A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.965125e-02	ci left: 2.925144e-01	ci right 3.106013e-01	k: 3015	n:10000
Cons ci ratio: 9.344901e-03	ci left: 9.417001e-01	ci right 9.506377e-01	k: 9463	n:10000
KS ci ratio: 8.313059e-02	ci left: 1.742843e-01	ci right 1.895015e-01	k: 1818	n:10000
SLC2A7   10000 perm   2 sec   (5627 perm/sec)   p_kst 1.818000e-01   p_cons 9.463000e-01   p_joint 3.015000e-01

Outputting figure to mutsig2_images.part000000000160/SLC2A7.8_1587_10000_0.1818_0.9463_0.3015.png
                gene_name: SLC2A7
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 3 percent done.
SLC26A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.408530e-02	ci left: 8.793013e-01	ci right 8.918731e-01	k: 8857	n:10000
Cons ci ratio: 3.602976e-02	ci left: 5.321738e-01	ci right 5.518018e-01	k: 5420	n:10000
KS ci ratio: 1.994913e-02	ci left: 7.862424e-01	ci right 8.021858e-01	k: 7943	n:10000
SLC26A2   10000 perm   2 sec   (5210 perm/sec)   p_kst 7.943000e-01   p_cons 5.420000e-01   p_joint 8.857000e-01

Outputting figure to mutsig2_images.part000000000160/SLC26A2.7_2228_10000_0.7943_0.542_0.8857.png
                gene_name: SLC26A2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 5 percent done.
SLC26A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.783063e-02	ci left: 5.078524e-01	ci right 5.275373e-01	k: 5177	n:10000
KS ci ratio: 1.862176e-02	ci left: 8.081622e-01	ci right 8.234533e-01	k: 8159	n:10000
SLC26A5   10000 perm   2 sec   (4970 perm/sec)   p_kst 8.159000e-01   p_cons 5.177000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC26A5.7_2348_10000_0.8159_0.5177_1.png
                gene_name: SLC26A5
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
SLC26A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.021285e-01	ci left: 1.218044e-01	ci right 1.350129e-01	k: 1283	n:10000
Cons ci ratio: 2.094610e-02	ci left: 7.696229e-01	ci right 7.860149e-01	k: 7779	n:10000
KS ci ratio: 1.805768e-01	ci left: 4.092429e-02	ci right 4.914339e-02	k: 449	n:10000
SLC26A7   10000 perm   2 sec   (5109 perm/sec)   p_kst 4.490000e-02   p_cons 7.779000e-01   p_joint 1.283000e-01

Joint ci ratio: 8.505721e-02	ci left: 9.190214e-02	ci right 1.001157e-01	k: 1919	n:20000
Cons ci ratio: 1.489245e-02	ci left: 7.701570e-01	ci right 7.817627e-01	k: 15520	n:20000
KS ci ratio: 1.246042e-01	ci left: 4.420494e-02	ci right 5.012760e-02	k: 942	n:20000
SLC26A7   20000 perm   4 sec   (4551 perm/sec)   p_kst 4.710000e-02   p_cons 7.760000e-01   p_joint 9.595000e-02

Joint ci ratio: 6.713963e-02	ci left: 9.859726e-02	ci right 1.054800e-01	k: 3060	n:30000
Cons ci ratio: 1.234483e-02	ci left: 7.659003e-01	ci right 7.754473e-01	k: 23121	n:30000
KS ci ratio: 1.031833e-01	ci left: 4.352684e-02	ci right 4.829493e-02	k: 1376	n:30000
SLC26A7   30000 perm   7 sec   (4361 perm/sec)   p_kst 4.586667e-02   p_cons 7.707000e-01   p_joint 1.020000e-01

Joint ci ratio: 5.935330e-02	ci left: 9.539913e-02	ci right 1.012593e-01	k: 3932	n:40000
Cons ci ratio: 1.076502e-02	ci left: 7.640831e-01	ci right 7.723779e-01	k: 30730	n:40000
KS ci ratio: 8.913099e-02	ci left: 4.406547e-02	ci right 4.820074e-02	k: 1844	n:40000
SLC26A7   40000 perm   9 sec   (4262 perm/sec)   p_kst 4.610000e-02   p_cons 7.682500e-01   p_joint 9.830000e-02

Outputting figure to mutsig2_images.part000000000160/SLC26A7.7_2104_40000_0.0461_0.76825_0.0983.png
                gene_name: SLC26A7
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.098 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 8 percent done.
SLC2A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.755303e-01	ci left: 4.331756e-02	ci right 5.174854e-02	k: 474	n:10000
Cons ci ratio: 2.386945e-02	ci left: 7.206775e-01	ci right 7.381887e-01	k: 7295	n:10000
KS ci ratio: 4.284655e-01	ci left: 6.526864e-03	ci right 1.016828e-02	k: 82	n:10000
SLC2A14   10000 perm   2 sec   (5865 perm/sec)   p_kst 8.200000e-03   p_cons 7.295000e-01   p_joint 4.740000e-02

Joint ci ratio: 1.111972e-01	ci left: 5.523815e-02	ci right 6.179094e-02	k: 1169	n:20000
Cons ci ratio: 1.707533e-02	ci left: 7.186537e-01	ci right 7.310809e-01	k: 14498	n:20000
KS ci ratio: 2.892375e-01	ci left: 7.784307e-03	ci right 1.046133e-02	k: 181	n:20000
SLC2A14   20000 perm   4 sec   (5221 perm/sec)   p_kst 9.050000e-03   p_cons 7.249000e-01   p_joint 5.845000e-02

Joint ci ratio: 1.319761e-01	ci left: 2.667845e-02	ci right 3.048025e-02	k: 856	n:30000
Cons ci ratio: 1.399564e-02	ci left: 7.182666e-01	ci right 7.284235e-01	k: 21701	n:30000
KS ci ratio: 2.335866e-01	ci left: 8.213484e-03	ci right 1.041645e-02	k: 278	n:30000
SLC2A14   30000 perm   6 sec   (4984 perm/sec)   p_kst 9.266667e-03   p_cons 7.233667e-01   p_joint 2.853333e-02

Joint ci ratio: 1.026498e-01	ci left: 3.336659e-02	ci right 3.700130e-02	k: 1406	n:40000
Cons ci ratio: 1.208177e-02	ci left: 7.202438e-01	ci right 7.290236e-01	k: 28986	n:40000
KS ci ratio: 1.998665e-01	ci left: 8.572620e-03	ci right 1.049959e-02	k: 380	n:40000
SLC2A14   40000 perm   8 sec   (4838 perm/sec)   p_kst 9.500000e-03   p_cons 7.246500e-01   p_joint 3.515000e-02

Joint ci ratio: 9.992388e-02	ci left: 2.836598e-02	ci right 3.136893e-02	k: 1492	n:50000
Cons ci ratio: 1.077677e-02	ci left: 7.218064e-01	ci right 7.296473e-01	k: 36287	n:50000
KS ci ratio: 1.756737e-01	ci left: 8.993356e-03	ci right 1.074425e-02	k: 492	n:50000
SLC2A14   50000 perm   11 sec   (4707 perm/sec)   p_kst 9.840000e-03   p_cons 7.257400e-01   p_joint 2.984000e-02

Joint ci ratio: 9.411626e-02	ci left: 2.677593e-02	ci right 2.943665e-02	k: 1685	n:60000
Cons ci ratio: 9.840859e-03	ci left: 7.220272e-01	ci right 7.291843e-01	k: 43537	n:60000
KS ci ratio: 1.635525e-01	ci left: 8.707304e-03	ci right 1.027403e-02	k: 568	n:60000
SLC2A14   60000 perm   13 sec   (4609 perm/sec)   p_kst 9.466667e-03   p_cons 7.256167e-01   p_joint 2.808333e-02

Joint ci ratio: 9.759314e-02	ci left: 2.142800e-02	ci right 2.364039e-02	k: 1576	n:70000
Cons ci ratio: 9.112889e-03	ci left: 7.222063e-01	ci right 7.288321e-01	k: 50787	n:70000
KS ci ratio: 1.514012e-01	ci left: 8.767145e-03	ci right 1.021681e-02	k: 663	n:70000
SLC2A14   70000 perm   15 sec   (4517 perm/sec)   p_kst 9.471429e-03   p_cons 7.255286e-01   p_joint 2.251429e-02

Joint ci ratio: 9.465689e-02	ci left: 1.999315e-02	ci right 2.199180e-02	k: 1678	n:80000
Cons ci ratio: 8.515849e-03	ci left: 7.228197e-01	ci right 7.290139e-01	k: 58074	n:80000
KS ci ratio: 1.426569e-01	ci left: 8.682620e-03	ci right 1.002832e-02	k: 747	n:80000
SLC2A14   80000 perm   18 sec   (4431 perm/sec)   p_kst 9.337500e-03   p_cons 7.259250e-01   p_joint 2.097500e-02

Joint ci ratio: 9.270892e-02	ci left: 1.857401e-02	ci right 2.039049e-02	k: 1752	n:90000
Cons ci ratio: 8.028655e-03	ci left: 7.230064e-01	ci right 7.288457e-01	k: 65334	n:90000
KS ci ratio: 1.350257e-01	ci left: 8.650978e-03	ci right 9.914288e-03	k: 834	n:90000
SLC2A14   90000 perm   21 sec   (4356 perm/sec)   p_kst 9.266667e-03   p_cons 7.259333e-01   p_joint 1.946667e-02

Joint ci ratio: 9.414930e-02	ci left: 1.623712e-02	ci right 1.785107e-02	k: 1703	n:100000
Cons ci ratio: 7.601406e-03	ci left: 7.239564e-01	ci right 7.294904e-01	k: 72673	n:100000
KS ci ratio: 1.272533e-01	ci left: 8.801496e-03	ci right 1.000722e-02	k: 939	n:100000
SLC2A14   100000 perm   23 sec   (4285 perm/sec)   p_kst 9.390000e-03   p_cons 7.267300e-01   p_joint 1.703000e-02

Joint ci ratio: 8.955909e-02	ci left: 1.635096e-02	ci right 1.789283e-02	k: 1882	n:110000
Cons ci ratio: 7.110136e-03	ci left: 7.316517e-01	ci right 7.368814e-01	k: 80770	n:110000
KS ci ratio: 1.215094e-01	ci left: 8.802900e-03	ci right 9.950464e-03	k: 1030	n:110000
SLC2A14   110000 perm   26 sec   (4216 perm/sec)   p_kst 9.363636e-03   p_cons 7.342727e-01   p_joint 1.710909e-02

Joint ci ratio: 8.741018e-02	ci left: 1.576232e-02	ci right 1.721118e-02	k: 1977	n:120000
Cons ci ratio: 6.810597e-03	ci left: 7.315821e-01	ci right 7.365899e-01	k: 88091	n:120000
KS ci ratio: 1.170066e-01	ci left: 8.724171e-03	ci right 9.816409e-03	k: 1111	n:120000
SLC2A14   120000 perm   29 sec   (4146 perm/sec)   p_kst 9.258333e-03   p_cons 7.340917e-01   p_joint 1.647500e-02

Joint ci ratio: 7.444174e-02	ci left: 2.010659e-02	ci right 2.166873e-02	k: 2714	n:130000
Cons ci ratio: 6.539404e-03	ci left: 7.319207e-01	ci right 7.367304e-01	k: 95463	n:130000
KS ci ratio: 1.120259e-01	ci left: 8.807776e-03	ci right 9.860439e-03	k: 1212	n:130000
SLC2A14   130000 perm   32 sec   (4082 perm/sec)   p_kst 9.323077e-03   p_cons 7.343308e-01   p_joint 2.087692e-02

Joint ci ratio: 7.179466e-02	ci left: 2.010090e-02	ci right 2.160475e-02	k: 2918	n:140000
Cons ci ratio: 6.294873e-03	ci left: 7.324219e-01	ci right 7.370541e-01	k: 102864	n:140000
KS ci ratio: 1.076314e-01	ci left: 8.880280e-03	ci right 9.897338e-03	k: 1313	n:140000
SLC2A14   140000 perm   35 sec   (4018 perm/sec)   p_kst 9.378571e-03   p_cons 7.347429e-01   p_joint 2.084286e-02

Joint ci ratio: 7.525639e-02	ci left: 1.709761e-02	ci right 1.844113e-02	k: 2664	n:150000
Cons ci ratio: 6.074294e-03	ci left: 7.329593e-01	ci right 7.374316e-01	k: 110280	n:150000
KS ci ratio: 1.065664e-01	ci left: 8.463342e-03	ci right 9.422450e-03	k: 1340	n:150000
SLC2A14   150000 perm   38 sec   (3954 perm/sec)   p_kst 8.933333e-03   p_cons 7.352000e-01   p_joint 1.776000e-02

Joint ci ratio: 7.661033e-02	ci left: 1.548282e-02	ci right 1.672231e-02	k: 2575	n:160000
Cons ci ratio: 5.884715e-03	ci left: 7.328113e-01	ci right 7.371426e-01	k: 117597	n:160000
KS ci ratio: 1.031970e-01	ci left: 8.476045e-03	ci right 9.404380e-03	k: 1429	n:160000
SLC2A14   160000 perm   41 sec   (3895 perm/sec)   p_kst 8.931250e-03   p_cons 7.349813e-01   p_joint 1.609375e-02

Joint ci ratio: 7.532210e-02	ci left: 1.509130e-02	ci right 1.627824e-02	k: 2665	n:170000
Cons ci ratio: 5.707014e-03	ci left: 7.330131e-01	ci right 7.372142e-01	k: 124970	n:170000
KS ci ratio: 1.001949e-01	ci left: 8.476203e-03	ci right 9.375958e-03	k: 1516	n:170000
SLC2A14   170000 perm   44 sec   (3834 perm/sec)   p_kst 8.917647e-03   p_cons 7.351176e-01   p_joint 1.567647e-02

Joint ci ratio: 6.910754e-02	ci left: 1.695386e-02	ci right 1.817286e-02	k: 3160	n:180000
Cons ci ratio: 5.541726e-03	ci left: 7.333890e-01	ci right 7.374701e-01	k: 132378	n:180000
KS ci ratio: 9.731803e-02	ci left: 8.498377e-03	ci right 9.373105e-03	k: 1607	n:180000
SLC2A14   180000 perm   48 sec   (3780 perm/sec)   p_kst 8.927778e-03   p_cons 7.354333e-01   p_joint 1.755556e-02

Outputting figure to mutsig2_images.part000000000160/SLC2A14.7_1603_180000_0.0089278_0.73543_0.017556.png
                gene_name: SLC2A14
               theta_stop: 0.097 
                    nperm: 180000 
                     p_ks: 0.0089 
        ci_ks_bounds_left: 0.0085 
       ci_ks_bounds_right: 0.0094 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.018 

Current progress: 10 percent done.
SLC35E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.249378e-02	ci left: 1.765467e-01	ci right 1.918378e-01	k: 1841	n:10000
Cons ci ratio: 5.470120e-02	ci left: 3.299187e-01	ci right 3.485750e-01	k: 3392	n:10000
KS ci ratio: 1.003866e-01	ci left: 1.256193e-01	ci right 1.389957e-01	k: 1322	n:10000
SLC35E1   10000 perm   2 sec   (6234 perm/sec)   p_kst 1.322000e-01   p_cons 3.392000e-01   p_joint 1.841000e-01

Joint ci ratio: 5.834242e-02	ci left: 1.787499e-01	ci right 1.895421e-01	k: 3682	n:20000
Cons ci ratio: 3.897908e-02	ci left: 3.292541e-01	ci right 3.423937e-01	k: 6716	n:20000
KS ci ratio: 7.076969e-02	ci left: 1.282732e-01	ci right 1.377338e-01	k: 2659	n:20000
SLC35E1   20000 perm   4 sec   (5491 perm/sec)   p_kst 1.329500e-01   p_cons 3.358000e-01   p_joint 1.841000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35E1.7_1257_20000_0.13295_0.3358_0.1841.png
                gene_name: SLC35E1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 12 percent done.
SLC2A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.873855e-02	ci left: 3.831109e-01	ci right 4.023516e-01	k: 3927	n:10000
Cons ci ratio: 1.714184e-02	ci left: 8.321569e-01	ci right 8.466448e-01	k: 8395	n:10000
KS ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
SLC2A9   10000 perm   2 sec   (5435 perm/sec)   p_kst 2.945000e-01   p_cons 8.395000e-01   p_joint 3.927000e-01

Outputting figure to mutsig2_images.part000000000160/SLC2A9.6_1738_10000_0.2945_0.8395_0.3927.png
                gene_name: SLC2A9
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 14 percent done.
SLC30A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.155349e-02	ci left: 4.609766e-01	ci right 4.806404e-01	k: 4708	n:10000
Cons ci ratio: 6.903667e-02	ci left: 2.353112e-01	ci right 2.522383e-01	k: 2437	n:10000
KS ci ratio: 5.215104e-03	ci left: 9.799492e-01	ci right 9.851642e-01	k: 9827	n:10000
SLC30A8   10000 perm   2 sec   (5489 perm/sec)   p_kst 9.827000e-01   p_cons 2.437000e-01   p_joint 4.708000e-01

Outputting figure to mutsig2_images.part000000000160/SLC30A8.6_1142_10000_0.9827_0.2437_0.4708.png
                gene_name: SLC30A8
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 15 percent done.
SLC30A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.398911e-02	ci left: 3.357785e-01	ci right 3.545118e-01	k: 3451	n:10000
Cons ci ratio: 4.904642e-02	ci left: 3.801249e-01	ci right 3.993394e-01	k: 3897	n:10000
KS ci ratio: 7.788726e-02	ci left: 1.941685e-01	ci right 2.100054e-01	k: 2020	n:10000
SLC30A9   10000 perm   2 sec   (5196 perm/sec)   p_kst 2.020000e-01   p_cons 3.897000e-01   p_joint 3.451000e-01

Outputting figure to mutsig2_images.part000000000160/SLC30A9.6_1779_10000_0.202_0.3897_0.3451.png
                gene_name: SLC30A9
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 17 percent done.
SLC32A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.155520e-01	ci left: 9.720616e-02	ci right 1.092261e-01	k: 1031	n:10000
Cons ci ratio: 1.093867e-01	ci left: 1.075413e-01	ci right 1.200846e-01	k: 1137	n:10000
KS ci ratio: 1.071161e-01	ci left: 1.117389e-01	ci right 1.244845e-01	k: 1180	n:10000
SLC32A1   10000 perm   2 sec   (5985 perm/sec)   p_kst 1.180000e-01   p_cons 1.137000e-01   p_joint 1.031000e-01

Joint ci ratio: 9.144234e-02	ci left: 8.028925e-02	ci right 8.803215e-02	k: 1682	n:20000
Cons ci ratio: 7.022260e-02	ci left: 1.300461e-01	ci right 1.395604e-01	k: 2695	n:20000
KS ci ratio: 7.479556e-02	ci left: 1.162154e-01	ci right 1.252952e-01	k: 2414	n:20000
SLC32A1   20000 perm   4 sec   (5325 perm/sec)   p_kst 1.207000e-01   p_cons 1.347500e-01   p_joint 8.410000e-02

Outputting figure to mutsig2_images.part000000000160/SLC32A1.6_1586_20000_0.1207_0.13475_0.0841.png
                gene_name: SLC32A1
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.088 

Current progress: 19 percent done.
SLC26A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.794182e-01	ci left: 1.660112e-02	ci right 2.208394e-02	k: 192	n:10000
Cons ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
KS ci ratio: 1.287741e-01	ci left: 7.931430e-02	ci right 9.032897e-02	k: 847	n:10000
SLC26A9   10000 perm   2 sec   (5341 perm/sec)   p_kst 8.470000e-02   p_cons 1.300000e-03   p_joint 1.920000e-02

Joint ci ratio: 4.217842e-01	ci left: 3.396118e-03	ci right 5.252548e-03	k: 85	n:20000
Cons ci ratio: 6.270744e-01	ci left: 1.344893e-03	ci right 2.606975e-03	k: 38	n:20000
KS ci ratio: 9.013292e-02	ci left: 8.249260e-02	ci right 9.032813e-02	k: 1727	n:20000
SLC26A9   20000 perm   4 sec   (4896 perm/sec)   p_kst 8.635000e-02   p_cons 1.900000e-03   p_joint 4.250000e-03

Joint ci ratio: 4.490775e-01	ci left: 1.966901e-03	ci right 3.132778e-03	k: 75	n:30000
Cons ci ratio: 5.595332e-01	ci left: 1.179942e-03	ci right 2.120815e-03	k: 48	n:30000
KS ci ratio: 7.346969e-02	ci left: 8.347369e-02	ci right 8.987329e-02	k: 2599	n:30000
SLC26A9   30000 perm   7 sec   (4287 perm/sec)   p_kst 8.663333e-02   p_cons 1.600000e-03   p_joint 2.500000e-03

Joint ci ratio: 3.876378e-01	ci left: 2.057110e-03	ci right 3.067270e-03	k: 101	n:40000
Cons ci ratio: 5.015155e-01	ci left: 1.144847e-03	ci right 1.930381e-03	k: 60	n:40000
KS ci ratio: 6.353323e-02	ci left: 8.413242e-02	ci right 8.967772e-02	k: 3475	n:40000
SLC26A9   40000 perm   9 sec   (4264 perm/sec)   p_kst 8.687500e-02   p_cons 1.500000e-03   p_joint 2.525000e-03

Joint ci ratio: 2.567603e-01	ci left: 4.044513e-03	ci right 5.254105e-03	k: 231	n:50000
Cons ci ratio: 4.379142e-01	ci left: 1.251094e-03	ci right 1.968768e-03	k: 79	n:50000
KS ci ratio: 5.669745e-02	ci left: 8.478058e-02	ci right 8.974746e-02	k: 4362	n:50000
SLC26A9   50000 perm   12 sec   (4225 perm/sec)   p_kst 8.724000e-02   p_cons 1.580000e-03   p_joint 4.620000e-03

Joint ci ratio: 2.449557e-01	ci left: 3.729594e-03	ci right 4.785910e-03	k: 254	n:60000
Cons ci ratio: 3.734115e-01	ci left: 1.491902e-03	ci right 2.191030e-03	k: 109	n:60000
KS ci ratio: 5.165274e-02	ci left: 8.531658e-02	ci right 8.985674e-02	k: 5254	n:60000
SLC26A9   60000 perm   14 sec   (4156 perm/sec)   p_kst 8.756667e-02   p_cons 1.816667e-03   p_joint 4.233333e-03

Joint ci ratio: 2.431242e-01	ci left: 3.250342e-03	ci right 4.162987e-03	k: 258	n:70000
Cons ci ratio: 3.383097e-01	ci left: 1.591065e-03	ci right 2.251319e-03	k: 133	n:70000
KS ci ratio: 4.749433e-02	ci left: 8.657551e-02	ci right 9.080151e-02	k: 6207	n:70000
SLC26A9   70000 perm   18 sec   (3989 perm/sec)   p_kst 8.867143e-02   p_cons 1.900000e-03   p_joint 3.685714e-03

Joint ci ratio: 2.030426e-01	ci left: 4.166622e-03	ci right 5.119849e-03	k: 370	n:80000
Cons ci ratio: 3.176498e-01	ci left: 1.598674e-03	ci right 2.213349e-03	k: 151	n:80000
KS ci ratio: 4.450563e-02	ci left: 8.642920e-02	ci right 9.037570e-02	k: 7071	n:80000
SLC26A9   80000 perm   20 sec   (3953 perm/sec)   p_kst 8.838750e-02   p_cons 1.887500e-03   p_joint 4.625000e-03

Joint ci ratio: 1.906007e-01	ci left: 4.231878e-03	ci right 5.133837e-03	k: 420	n:90000
Cons ci ratio: 2.951904e-01	ci left: 1.667243e-03	ci right 2.254491e-03	k: 175	n:90000
KS ci ratio: 4.193143e-02	ci left: 8.665216e-02	ci right 9.037441e-02	k: 7965	n:90000
SLC26A9   90000 perm   23 sec   (3890 perm/sec)   p_kst 8.850000e-02   p_cons 1.944444e-03   p_joint 4.666667e-03

Joint ci ratio: 1.809710e-01	ci left: 4.247310e-03	ci right 5.101811e-03	k: 466	n:100000
Cons ci ratio: 2.818939e-01	ci left: 1.658220e-03	ci right 2.211309e-03	k: 192	n:100000
KS ci ratio: 3.982191e-02	ci left: 8.657814e-02	ci right 9.010578e-02	k: 8833	n:100000
SLC26A9   100000 perm   26 sec   (3843 perm/sec)   p_kst 8.833000e-02   p_cons 1.920000e-03   p_joint 4.660000e-03

Joint ci ratio: 1.106006e-01	ci left: 1.066605e-02	ci right 1.192355e-02	k: 1241	n:110000
Cons ci ratio: 2.696038e-01	ci left: 1.659801e-03	ci right 2.185199e-03	k: 210	n:110000
KS ci ratio: 3.677790e-02	ci left: 9.188491e-02	ci right 9.533655e-02	k: 10296	n:110000
SLC26A9   110000 perm   29 sec   (3800 perm/sec)   p_kst 9.360000e-02   p_cons 1.909091e-03   p_joint 1.128182e-02

Joint ci ratio: 1.069717e-01	ci left: 1.047432e-02	ci right 1.166615e-02	k: 1327	n:120000
Cons ci ratio: 2.587925e-01	ci left: 1.661553e-03	ci right 2.163008e-03	k: 228	n:120000
KS ci ratio: 3.511240e-02	ci left: 9.243719e-02	ci right 9.574913e-02	k: 11290	n:120000
SLC26A9   120000 perm   32 sec   (3760 perm/sec)   p_kst 9.408333e-02   p_cons 1.900000e-03   p_joint 1.105833e-02

Joint ci ratio: 1.134991e-01	ci left: 8.575982e-03	ci right 9.615323e-03	k: 1181	n:130000
Cons ci ratio: 2.517515e-01	ci left: 1.627341e-03	ci right 2.103012e-03	k: 241	n:130000
KS ci ratio: 3.377443e-02	ci left: 9.230434e-02	ci right 9.548303e-02	k: 12205	n:130000
SLC26A9   130000 perm   35 sec   (3717 perm/sec)   p_kst 9.388462e-02   p_cons 1.853846e-03   p_joint 9.084615e-03

Joint ci ratio: 1.103333e-01	ci left: 8.442440e-03	ci right 9.435201e-03	k: 1250	n:140000
Cons ci ratio: 2.467136e-01	ci left: 1.578064e-03	ci right 2.028686e-03	k: 251	n:140000
KS ci ratio: 3.260876e-02	ci left: 9.203657e-02	ci right 9.509458e-02	k: 13098	n:140000
SLC26A9   140000 perm   38 sec   (3664 perm/sec)   p_kst 9.355714e-02   p_cons 1.792857e-03   p_joint 8.928571e-03

Joint ci ratio: 1.068886e-01	ci left: 8.411421e-03	ci right 9.367708e-03	k: 1332	n:150000
Cons ci ratio: 2.396857e-01	ci left: 1.566766e-03	ci right 1.999523e-03	k: 266	n:150000
KS ci ratio: 3.149519e-02	ci left: 9.213052e-02	ci right 9.508521e-02	k: 14040	n:150000
SLC26A9   150000 perm   41 sec   (3624 perm/sec)   p_kst 9.360000e-02   p_cons 1.773333e-03   p_joint 8.880000e-03

Joint ci ratio: 1.343354e-01	ci left: 4.938009e-03	ci right 5.655097e-03	k: 846	n:160000
Cons ci ratio: 2.805450e-01	ci left: 1.047958e-03	ci right 1.395522e-03	k: 194	n:160000
KS ci ratio: 3.051878e-02	ci left: 9.204669e-02	ci right 9.490556e-02	k: 14955	n:160000
SLC26A9   160000 perm   45 sec   (3585 perm/sec)   p_kst 9.346875e-02   p_cons 1.212500e-03   p_joint 5.287500e-03

Joint ci ratio: 1.312765e-01	ci left: 4.875004e-03	ci right 5.565564e-03	k: 886	n:170000
Cons ci ratio: 2.709845e-01	ci left: 1.062975e-03	ci right 1.401462e-03	k: 208	n:170000
KS ci ratio: 2.959909e-02	ci left: 9.213760e-02	ci right 9.491157e-02	k: 15898	n:170000
SLC26A9   170000 perm   48 sec   (3545 perm/sec)   p_kst 9.351765e-02   p_cons 1.223529e-03   p_joint 5.211765e-03

Joint ci ratio: 1.005211e-01	ci left: 7.956450e-03	ci right 8.803942e-03	k: 1507	n:180000
Cons ci ratio: 2.641241e-01	ci left: 1.060933e-03	ci right 1.388804e-03	k: 219	n:180000
KS ci ratio: 2.877952e-02	ci left: 9.209260e-02	ci right 9.478717e-02	k: 16818	n:180000
SLC26A9   180000 perm   51 sec   (3505 perm/sec)   p_kst 9.343333e-02   p_cons 1.216667e-03   p_joint 8.372222e-03

Joint ci ratio: 1.016709e-01	ci left: 7.368283e-03	ci right 8.162635e-03	k: 1474	n:190000
Cons ci ratio: 2.550111e-01	ci left: 1.083830e-03	ci right 1.405383e-03	k: 235	n:190000
KS ci ratio: 2.803405e-02	ci left: 9.199577e-02	ci right 9.461665e-02	k: 17727	n:190000
SLC26A9   190000 perm   55 sec   (3465 perm/sec)   p_kst 9.330000e-02   p_cons 1.236842e-03   p_joint 7.757895e-03

Joint ci ratio: 1.066866e-01	ci left: 6.347136e-03	ci right 7.067274e-03	k: 1340	n:200000
Cons ci ratio: 2.472723e-01	ci left: 1.099920e-03	ci right 1.414822e-03	k: 250	n:200000
KS ci ratio: 2.731054e-02	ci left: 9.211319e-02	ci right 9.466861e-02	k: 18677	n:200000
SLC26A9   200000 perm   58 sec   (3427 perm/sec)   p_kst 9.338500e-02   p_cons 1.250000e-03   p_joint 6.700000e-03

Joint ci ratio: 9.294029e-02	ci left: 8.009421e-03	ci right 8.794715e-03	k: 1763	n:210000
Cons ci ratio: 2.424905e-01	ci left: 1.092239e-03	ci right 1.397985e-03	k: 260	n:210000
KS ci ratio: 2.645192e-02	ci left: 9.342251e-02	ci right 9.593154e-02	k: 19881	n:210000
SLC26A9   210000 perm   62 sec   (3388 perm/sec)   p_kst 9.467143e-02   p_cons 1.238095e-03   p_joint 8.395238e-03

Joint ci ratio: 9.282566e-02	ci left: 7.667493e-03	ci right 8.418283e-03	k: 1768	n:220000
Cons ci ratio: 2.379758e-01	ci left: 1.085310e-03	ci right 1.382627e-03	k: 270	n:220000
KS ci ratio: 2.584838e-02	ci left: 9.342081e-02	ci right 9.587170e-02	k: 20821	n:220000
SLC26A9   220000 perm   66 sec   (3348 perm/sec)   p_kst 9.464091e-02   p_cons 1.227273e-03   p_joint 8.036364e-03

Joint ci ratio: 9.064727e-02	ci left: 7.699464e-03	ci right 8.434753e-03	k: 1854	n:230000
Cons ci ratio: 2.320563e-01	ci left: 1.095410e-03	ci right 1.386958e-03	k: 284	n:230000
KS ci ratio: 2.525297e-02	ci left: 9.363169e-02	ci right 9.603070e-02	k: 21810	n:230000
SLC26A9   230000 perm   69 sec   (3311 perm/sec)   p_kst 9.482609e-02   p_cons 1.234783e-03   p_joint 8.060870e-03

Joint ci ratio: 9.269879e-02	ci left: 7.052852e-03	ci right 7.742458e-03	k: 1774	n:240000
Cons ci ratio: 2.280904e-01	ci left: 1.089033e-03	ci right 1.373233e-03	k: 294	n:240000
KS ci ratio: 2.475753e-02	ci left: 9.340709e-02	ci right 9.575271e-02	k: 22698	n:240000
SLC26A9   240000 perm   73 sec   (3274 perm/sec)   p_kst 9.457500e-02   p_cons 1.225000e-03   p_joint 7.391667e-03

Joint ci ratio: 9.938789e-02	ci left: 5.876533e-03	ci right 6.495000e-03	k: 1545	n:250000
Cons ci ratio: 2.232247e-01	ci left: 1.094532e-03	ci right 1.373238e-03	k: 307	n:250000
KS ci ratio: 2.428217e-02	ci left: 9.325658e-02	ci right 9.555283e-02	k: 23600	n:250000
SLC26A9   250000 perm   77 sec   (3234 perm/sec)   p_kst 9.440000e-02   p_cons 1.228000e-03   p_joint 6.180000e-03

Joint ci ratio: 1.089554e-01	ci left: 4.683842e-03	ci right 5.227284e-03	k: 1287	n:260000
Cons ci ratio: 2.183173e-01	ci left: 1.103305e-03	ci right 1.377239e-03	k: 321	n:260000
KS ci ratio: 2.381868e-02	ci left: 9.322135e-02	ci right 9.547232e-02	k: 24529	n:260000
SLC26A9   260000 perm   82 sec   (3184 perm/sec)   p_kst 9.434231e-02   p_cons 1.234615e-03   p_joint 4.950000e-03

Joint ci ratio: 7.558704e-02	ci left: 9.489995e-03	ci right 1.023910e-02	k: 2662	n:270000
Cons ci ratio: 2.042044e-01	ci left: 1.223816e-03	ci right 1.505581e-03	k: 367	n:270000
KS ci ratio: 2.338482e-02	ci left: 9.315964e-02	ci right 9.536759e-02	k: 25450	n:270000
SLC26A9   270000 perm   86 sec   (3146 perm/sec)   p_kst 9.425926e-02   p_cons 1.359259e-03   p_joint 9.859259e-03

Joint ci ratio: 7.189030e-02	ci left: 1.012925e-02	ci right 1.088808e-02	k: 2941	n:280000
Cons ci ratio: 1.978509e-01	ci left: 1.261511e-03	ci right 1.541829e-03	k: 391	n:280000
KS ci ratio: 2.298105e-02	ci left: 9.304940e-02	ci right 9.521615e-02	k: 26356	n:280000
SLC26A9   280000 perm   90 sec   (3109 perm/sec)   p_kst 9.412857e-02   p_cons 1.396429e-03   p_joint 1.050357e-02

Joint ci ratio: 7.062907e-02	ci left: 1.013897e-02	ci right 1.088466e-02	k: 3047	n:290000
Cons ci ratio: 1.934578e-01	ci left: 1.277040e-03	ci right 1.553767e-03	k: 409	n:290000
KS ci ratio: 2.257922e-02	ci left: 9.308430e-02	ci right 9.521347e-02	k: 27302	n:290000
SLC26A9   290000 perm   95 sec   (3066 perm/sec)   p_kst 9.414483e-02   p_cons 1.410345e-03   p_joint 1.050690e-02

Joint ci ratio: 6.958822e-02	ci left: 1.010229e-02	ci right 1.083388e-02	k: 3139	n:300000
Cons ci ratio: 1.920602e-01	ci left: 1.253506e-03	ci right 1.522941e-03	k: 415	n:300000
KS ci ratio: 2.218908e-02	ci left: 9.318352e-02	ci right 9.527766e-02	k: 28268	n:300000
SLC26A9   300000 perm   99 sec   (3032 perm/sec)   p_kst 9.422667e-02   p_cons 1.383333e-03   p_joint 1.046333e-02

Joint ci ratio: 7.152336e-02	ci left: 9.253392e-03	ci right 9.942919e-03	k: 2974	n:310000
Cons ci ratio: 1.878174e-01	ci left: 1.271447e-03	ci right 1.538013e-03	k: 434	n:310000
KS ci ratio: 2.182797e-02	ci left: 9.320280e-02	ci right 9.526286e-02	k: 29211	n:310000
SLC26A9   310000 perm   103 sec   (3000 perm/sec)   p_kst 9.422903e-02   p_cons 1.400000e-03   p_joint 9.593548e-03

Joint ci ratio: 7.055914e-02	ci left: 9.215915e-03	ci right 9.893012e-03	k: 3056	n:320000
Cons ci ratio: 1.840470e-01	ci left: 1.285348e-03	ci right 1.548814e-03	k: 452	n:320000
KS ci ratio: 2.146900e-02	ci left: 9.333931e-02	ci right 9.536804e-02	k: 30192	n:320000
SLC26A9   320000 perm   108 sec   (2967 perm/sec)   p_kst 9.435000e-02   p_cons 1.412500e-03   p_joint 9.550000e-03

Joint ci ratio: 6.959931e-02	ci left: 9.189702e-03	ci right 9.855317e-03	k: 3141	n:330000
Cons ci ratio: 1.810733e-01	ci left: 1.289775e-03	ci right 1.549410e-03	k: 467	n:330000
KS ci ratio: 2.113991e-02	ci left: 9.336527e-02	ci right 9.536307e-02	k: 31139	n:330000
SLC26A9   330000 perm   112 sec   (2936 perm/sec)   p_kst 9.436061e-02   p_cons 1.415152e-03   p_joint 9.518182e-03

Joint ci ratio: 6.865613e-02	ci left: 9.170873e-03	ci right 9.825764e-03	k: 3228	n:340000
Cons ci ratio: 1.793583e-01	ci left: 1.277116e-03	ci right 1.531503e-03	k: 476	n:340000
KS ci ratio: 2.083447e-02	ci left: 9.331673e-02	ci right 9.528430e-02	k: 32061	n:340000
SLC26A9   340000 perm   117 sec   (2906 perm/sec)   p_kst 9.429706e-02   p_cons 1.400000e-03   p_joint 9.494118e-03

Joint ci ratio: 7.107068e-02	ci left: 8.310773e-03	ci right 8.925975e-03	k: 3015	n:350000
Cons ci ratio: 1.773261e-01	ci left: 1.270653e-03	ci right 1.520577e-03	k: 487	n:350000
KS ci ratio: 2.053880e-02	ci left: 9.329677e-02	ci right 9.523567e-02	k: 32992	n:350000
SLC26A9   350000 perm   122 sec   (2878 perm/sec)   p_kst 9.426286e-02   p_cons 1.391429e-03   p_joint 8.614286e-03

Joint ci ratio: 9.887403e-02	ci left: 4.132212e-03	ci right 4.564715e-03	k: 1564	n:360000
Cons ci ratio: 1.530275e-01	ci left: 1.680198e-03	ci right 1.961251e-03	k: 654	n:360000
KS ci ratio: 2.025208e-02	ci left: 9.330575e-02	ci right 9.521745e-02	k: 33933	n:360000
SLC26A9   360000 perm   126 sec   (2852 perm/sec)   p_kst 9.425833e-02   p_cons 1.816667e-03   p_joint 4.344444e-03

Joint ci ratio: 9.766521e-02	ci left: 4.123344e-03	ci right 4.549341e-03	k: 1603	n:370000
Cons ci ratio: 1.513054e-01	ci left: 1.673784e-03	ci right 1.950328e-03	k: 669	n:370000
KS ci ratio: 1.997514e-02	ci left: 9.333057e-02	ci right 9.521633e-02	k: 34880	n:370000
SLC26A9   370000 perm   131 sec   (2825 perm/sec)   p_kst 9.427027e-02   p_cons 1.808108e-03   p_joint 4.332432e-03

Joint ci ratio: 9.655871e-02	ci left: 4.109837e-03	ci right 4.529356e-03	k: 1640	n:380000
Cons ci ratio: 1.497498e-01	ci left: 1.665191e-03	ci right 1.937233e-03	k: 683	n:380000
KS ci ratio: 1.971929e-02	ci left: 9.326779e-02	ci right 9.512787e-02	k: 35794	n:380000
SLC26A9   380000 perm   136 sec   (2799 perm/sec)   p_kst 9.419474e-02   p_cons 1.797368e-03   p_joint 4.315789e-03

Joint ci ratio: 9.517617e-02	ci left: 4.124584e-03	ci right 4.539244e-03	k: 1688	n:390000
Cons ci ratio: 1.475021e-01	ci left: 1.674338e-03	ci right 1.943407e-03	k: 704	n:390000
KS ci ratio: 1.945635e-02	ci left: 9.335390e-02	ci right 9.519059e-02	k: 36765	n:390000
SLC26A9   390000 perm   141 sec   (2771 perm/sec)   p_kst 9.426923e-02   p_cons 1.805128e-03   p_joint 4.328205e-03

Joint ci ratio: 9.398733e-02	ci left: 4.126427e-03	ci right 4.535804e-03	k: 1731	n:400000
Cons ci ratio: 1.455536e-01	ci left: 1.678238e-03	ci right 1.944062e-03	k: 723	n:400000
KS ci ratio: 1.921350e-02	ci left: 9.334873e-02	ci right 9.516215e-02	k: 37701	n:400000
SLC26A9   400000 perm   146 sec   (2743 perm/sec)   p_kst 9.425250e-02   p_cons 1.807500e-03   p_joint 4.327500e-03

Joint ci ratio: 9.310572e-02	ci left: 4.104385e-03	ci right 4.507548e-03	k: 1764	n:410000
Cons ci ratio: 1.436803e-01	ci left: 1.681970e-03	ci right 1.944663e-03	k: 742	n:410000
KS ci ratio: 1.896354e-02	ci left: 9.348725e-02	ci right 9.527947e-02	k: 38696	n:410000
SLC26A9   410000 perm   151 sec   (2716 perm/sec)   p_kst 9.438049e-02   p_cons 1.809756e-03   p_joint 4.302439e-03

Joint ci ratio: 8.490159e-02	ci left: 4.835526e-03	ci right 5.266583e-03	k: 2120	n:420000
Cons ci ratio: 1.414135e-01	ci left: 1.697029e-03	ci right 1.957539e-03	k: 766	n:420000
KS ci ratio: 1.873481e-02	ci left: 9.351261e-02	ci right 9.528346e-02	k: 39646	n:420000
SLC26A9   420000 perm   156 sec   (2689 perm/sec)   p_kst 9.439524e-02   p_cons 1.823810e-03   p_joint 5.047619e-03

Joint ci ratio: 8.504776e-02	ci left: 4.707126e-03	ci right 5.127495e-03	k: 2113	n:430000
Cons ci ratio: 1.394274e-01	ci left: 1.706930e-03	ci right 1.964974e-03	k: 788	n:430000
KS ci ratio: 1.851341e-02	ci left: 9.354387e-02	ci right 9.529416e-02	k: 40599	n:430000
SLC26A9   430000 perm   162 sec   (2662 perm/sec)   p_kst 9.441628e-02   p_cons 1.832558e-03   p_joint 4.913953e-03

Joint ci ratio: 8.435371e-02	ci left: 4.678003e-03	ci right 5.092194e-03	k: 2148	n:440000
Cons ci ratio: 1.380352e-01	ci left: 1.703237e-03	ci right 1.957940e-03	k: 804	n:440000
KS ci ratio: 1.830673e-02	ci left: 9.350819e-02	ci right 9.523807e-02	k: 41523	n:440000
SLC26A9   440000 perm   167 sec   (2639 perm/sec)   p_kst 9.437045e-02   p_cons 1.827273e-03   p_joint 4.881818e-03

Joint ci ratio: 8.329399e-02	ci left: 4.693709e-03	ci right 5.103816e-03	k: 2203	n:450000
Cons ci ratio: 1.360216e-01	ci left: 1.716893e-03	ci right 1.969590e-03	k: 828	n:450000
KS ci ratio: 1.810165e-02	ci left: 9.352289e-02	ci right 9.523345e-02	k: 42469	n:450000
SLC26A9   450000 perm   172 sec   (2616 perm/sec)   p_kst 9.437556e-02   p_cons 1.840000e-03   p_joint 4.895556e-03

Joint ci ratio: 8.238323e-02	ci left: 4.695987e-03	ci right 5.101592e-03	k: 2252	n:460000
Cons ci ratio: 1.341724e-01	ci left: 1.727880e-03	ci right 1.978461e-03	k: 851	n:460000
KS ci ratio: 1.790353e-02	ci left: 9.353488e-02	ci right 9.522675e-02	k: 43414	n:460000
SLC26A9   460000 perm   177 sec   (2594 perm/sec)   p_kst 9.437826e-02   p_cons 1.850000e-03   p_joint 4.895652e-03

Joint ci ratio: 8.157297e-02	ci left: 4.689854e-03	ci right 5.090755e-03	k: 2297	n:470000
Cons ci ratio: 1.332383e-01	ci left: 1.715794e-03	ci right 1.962753e-03	k: 863	n:470000
KS ci ratio: 1.770914e-02	ci left: 9.357190e-02	ci right 9.524587e-02	k: 44371	n:470000
SLC26A9   470000 perm   183 sec   (2565 perm/sec)   p_kst 9.440638e-02   p_cons 1.836170e-03   p_joint 4.887234e-03

Joint ci ratio: 8.071694e-02	ci left: 4.692161e-03	ci right 5.088852e-03	k: 2346	n:480000
Cons ci ratio: 1.314247e-01	ci left: 1.728394e-03	ci right 1.973515e-03	k: 887	n:480000
KS ci ratio: 1.752478e-02	ci left: 9.357011e-02	ci right 9.522645e-02	k: 45310	n:480000
SLC26A9   480000 perm   189 sec   (2543 perm/sec)   p_kst 9.439583e-02   p_cons 1.847917e-03   p_joint 4.887500e-03

Joint ci ratio: 7.816824e-02	ci left: 4.906467e-03	ci right 5.307582e-03	k: 2501	n:490000
Cons ci ratio: 1.299690e-01	ci left: 1.732602e-03	ci right 1.975389e-03	k: 907	n:490000
KS ci ratio: 1.734296e-02	ci left: 9.359898e-02	ci right 9.523847e-02	k: 46264	n:490000
SLC26A9   490000 perm   194 sec   (2520 perm/sec)   p_kst 9.441633e-02   p_cons 1.851020e-03   p_joint 5.104082e-03

Joint ci ratio: 7.745983e-02	ci left: 4.898546e-03	ci right 5.295222e-03	k: 2547	n:500000
Cons ci ratio: 1.289091e-01	ci left: 1.726978e-03	ci right 1.966853e-03	k: 922	n:500000
KS ci ratio: 1.717653e-02	ci left: 9.352916e-02	ci right 9.515155e-02	k: 47169	n:500000
SLC26A9   500000 perm   200 sec   (2498 perm/sec)   p_kst 9.433800e-02   p_cons 1.844000e-03   p_joint 5.094000e-03

Joint ci ratio: 7.726587e-02	ci left: 4.827487e-03	ci right 5.217385e-03	k: 2560	n:510000
Cons ci ratio: 1.278747e-01	ci left: 1.721583e-03	ci right 1.958643e-03	k: 937	n:510000
KS ci ratio: 1.699724e-02	ci left: 9.363794e-02	ci right 9.524510e-02	k: 48164	n:510000
SLC26A9   510000 perm   206 sec   (2476 perm/sec)   p_kst 9.443922e-02   p_cons 1.837255e-03   p_joint 5.019608e-03

Joint ci ratio: 7.668502e-02	ci left: 4.808205e-03	ci right 5.193496e-03	k: 2599	n:520000
Cons ci ratio: 1.262688e-01	ci left: 1.733163e-03	ci right 1.968597e-03	k: 961	n:520000
KS ci ratio: 1.683384e-02	ci left: 9.363726e-02	ci right 9.522880e-02	k: 49104	n:520000
SLC26A9   520000 perm   212 sec   (2453 perm/sec)   p_kst 9.443077e-02   p_cons 1.848077e-03   p_joint 4.998077e-03

Joint ci ratio: 7.603025e-02	ci left: 4.800768e-03	ci right 5.182033e-03	k: 2644	n:530000
Cons ci ratio: 1.251679e-01	ci left: 1.731528e-03	ci right 1.964537e-03	k: 978	n:530000
KS ci ratio: 1.667710e-02	ci left: 9.361599e-02	ci right 9.519222e-02	k: 50033	n:530000
SLC26A9   530000 perm   218 sec   (2431 perm/sec)   p_kst 9.440189e-02   p_cons 1.845283e-03   p_joint 4.988679e-03

Joint ci ratio: 7.530761e-02	ci left: 4.804522e-03	ci right 5.182300e-03	k: 2695	n:540000
Cons ci ratio: 1.239706e-01	ci left: 1.733552e-03	ci right 1.964438e-03	k: 997	n:540000
KS ci ratio: 1.652841e-02	ci left: 9.355684e-02	ci right 9.511789e-02	k: 50941	n:540000
SLC26A9   540000 perm   224 sec   (2410 perm/sec)   p_kst 9.433519e-02   p_cons 1.846296e-03   p_joint 4.990741e-03

Joint ci ratio: 8.114245e-02	ci left: 4.053951e-03	ci right 4.398576e-03	k: 2323	n:550000
Cons ci ratio: 1.384054e-01	ci left: 1.355551e-03	ci right 1.558849e-03	k: 800	n:550000
KS ci ratio: 1.637300e-02	ci left: 9.361040e-02	ci right 9.515752e-02	k: 51910	n:550000
SLC26A9   550000 perm   230 sec   (2388 perm/sec)   p_kst 9.438182e-02   p_cons 1.454545e-03   p_joint 4.223636e-03

Joint ci ratio: 8.295722e-02	ci left: 3.806631e-03	ci right 4.137819e-03	k: 2223	n:560000
Cons ci ratio: 1.368756e-01	ci left: 1.362381e-03	ci right 1.564261e-03	k: 818	n:560000
KS ci ratio: 1.622612e-02	ci left: 9.361763e-02	ci right 9.515086e-02	k: 52854	n:560000
SLC26A9   560000 perm   237 sec   (2368 perm/sec)   p_kst 9.438214e-02   p_cons 1.460714e-03   p_joint 3.969643e-03

Joint ci ratio: 8.322350e-02	ci left: 3.715790e-03	ci right 4.040162e-03	k: 2209	n:570000
Cons ci ratio: 1.356390e-01	ci left: 1.363899e-03	ci right 1.564030e-03	k: 833	n:570000
KS ci ratio: 1.608528e-02	ci left: 9.360194e-02	ci right 9.512148e-02	k: 53785	n:570000
SLC26A9   570000 perm   243 sec   (2346 perm/sec)   p_kst 9.435965e-02   p_cons 1.461404e-03   p_joint 3.875439e-03

Joint ci ratio: 7.580236e-02	ci left: 4.415630e-03	ci right 4.765209e-03	k: 2661	n:580000
Cons ci ratio: 1.341982e-01	ci left: 1.370371e-03	ci right 1.569145e-03	k: 851	n:580000
KS ci ratio: 1.594145e-02	ci left: 9.365729e-02	ci right 9.516401e-02	k: 54757	n:580000
SLC26A9   580000 perm   249 sec   (2325 perm/sec)   p_kst 9.440862e-02   p_cons 1.467241e-03   p_joint 4.587931e-03

Joint ci ratio: 7.661913e-02	ci left: 4.247668e-03	ci right 4.587735e-03	k: 2605	n:590000
Cons ci ratio: 1.328788e-01	ci left: 1.374995e-03	ci right 1.572325e-03	k: 868	n:590000
KS ci ratio: 1.579733e-02	ci left: 9.375473e-02	ci right 9.524926e-02	k: 55755	n:590000
SLC26A9   590000 perm   256 sec   (2305 perm/sec)   p_kst 9.450000e-02   p_cons 1.471186e-03   p_joint 4.415254e-03

Joint ci ratio: 7.685930e-02	ci left: 4.150711e-03	ci right 4.484103e-03	k: 2589	n:600000
Cons ci ratio: 1.321213e-01	ci left: 1.368192e-03	ci right 1.563339e-03	k: 878	n:600000
KS ci ratio: 1.565980e-02	ci left: 9.381908e-02	ci right 9.530150e-02	k: 56735	n:600000
SLC26A9   600000 perm   263 sec   (2284 perm/sec)   p_kst 9.455833e-02   p_cons 1.463333e-03   p_joint 4.315000e-03

Joint ci ratio: 7.939540e-02	ci left: 3.822254e-03	ci right 4.139863e-03	k: 2427	n:610000
Cons ci ratio: 1.307886e-01	ci left: 1.374301e-03	ci right 1.568188e-03	k: 896	n:610000
KS ci ratio: 1.573889e-02	ci left: 9.157965e-02	ci right 9.303406e-02	k: 56306	n:610000
SLC26A9   610000 perm   270 sec   (2260 perm/sec)   p_kst 9.230492e-02   p_cons 1.468852e-03   p_joint 3.978689e-03

Joint ci ratio: 7.879746e-02	ci left: 3.819101e-03	ci right 4.133949e-03	k: 2464	n:620000
Cons ci ratio: 1.295664e-01	ci left: 1.378662e-03	ci right 1.571206e-03	k: 913	n:620000
KS ci ratio: 1.560725e-02	ci left: 9.163044e-02	ci right 9.307337e-02	k: 57257	n:620000
SLC26A9   620000 perm   277 sec   (2242 perm/sec)   p_kst 9.235000e-02   p_cons 1.472581e-03   p_joint 3.974194e-03

Joint ci ratio: 8.048925e-02	ci left: 3.599784e-03	ci right 3.903220e-03	k: 2362	n:630000
Cons ci ratio: 1.284469e-01	ci left: 1.381355e-03	ci right 1.572482e-03	k: 929	n:630000
KS ci ratio: 1.548106e-02	ci left: 9.165594e-02	ci right 9.308750e-02	k: 58193	n:630000
SLC26A9   630000 perm   283 sec   (2224 perm/sec)   p_kst 9.236984e-02   p_cons 1.474603e-03   p_joint 3.749206e-03

Joint ci ratio: 7.376017e-02	ci left: 4.231643e-03	ci right 4.557244e-03	k: 2811	n:640000
Cons ci ratio: 1.276264e-01	ci left: 1.377921e-03	ci right 1.567263e-03	k: 941	n:640000
KS ci ratio: 1.536375e-02	ci left: 9.161684e-02	ci right 9.303685e-02	k: 59088	n:640000
SLC26A9   640000 perm   291 sec   (2203 perm/sec)   p_kst 9.232500e-02   p_cons 1.470313e-03   p_joint 4.392188e-03

Joint ci ratio: 7.440316e-02	ci left: 4.094052e-03	ci right 4.411930e-03	k: 2763	n:650000
Cons ci ratio: 1.266222e-01	ci left: 1.379065e-03	ci right 1.566961e-03	k: 956	n:650000
KS ci ratio: 1.524249e-02	ci left: 9.165105e-02	ci right 9.306028e-02	k: 60030	n:650000
SLC26A9   650000 perm   297 sec   (2187 perm/sec)   p_kst 9.235385e-02   p_cons 1.470769e-03   p_joint 4.250769e-03

Joint ci ratio: 7.387070e-02	ci left: 4.091503e-03	ci right 4.406813e-03	k: 2803	n:660000
Cons ci ratio: 1.253190e-01	ci left: 1.387519e-03	ci right 1.574476e-03	k: 976	n:660000
KS ci ratio: 1.512747e-02	ci left: 9.164651e-02	ci right 9.304495e-02	k: 60947	n:660000
SLC26A9   660000 perm   304 sec   (2169 perm/sec)   p_kst 9.234394e-02   p_cons 1.478788e-03   p_joint 4.246970e-03

Joint ci ratio: 7.333657e-02	ci left: 4.090503e-03	ci right 4.403359e-03	k: 2844	n:670000
Cons ci ratio: 1.245566e-01	ci left: 1.384160e-03	ci right 1.569447e-03	k: 988	n:670000
KS ci ratio: 1.501542e-02	ci left: 9.163769e-02	ci right 9.302554e-02	k: 61861	n:670000
SLC26A9   670000 perm   311 sec   (2154 perm/sec)   p_kst 9.232985e-02   p_cons 1.474627e-03   p_joint 4.244776e-03

Joint ci ratio: 7.495672e-02	ci left: 3.855689e-03	ci right 4.157384e-03	k: 2723	n:680000
Cons ci ratio: 1.237461e-01	ci left: 1.382329e-03	ci right 1.566078e-03	k: 1001	n:680000
KS ci ratio: 1.490713e-02	ci left: 9.161450e-02	ci right 9.299191e-02	k: 62765	n:680000
SLC26A9   680000 perm   318 sec   (2139 perm/sec)   p_kst 9.230147e-02   p_cons 1.472059e-03   p_joint 4.004412e-03

Joint ci ratio: 7.471149e-02	ci left: 3.825406e-03	ci right 4.123710e-03	k: 2741	n:690000
Cons ci ratio: 1.231946e-01	ci left: 1.374935e-03	ci right 1.556828e-03	k: 1010	n:690000
KS ci ratio: 1.479693e-02	ci left: 9.163969e-02	ci right 9.300721e-02	k: 63702	n:690000
SLC26A9   690000 perm   325 sec   (2123 perm/sec)   p_kst 9.232174e-02   p_cons 1.463768e-03   p_joint 3.972464e-03

Joint ci ratio: 7.509954e-02	ci left: 3.731500e-03	ci right 4.024058e-03	k: 2713	n:700000
Cons ci ratio: 1.222907e-01	ci left: 1.376064e-03	ci right 1.556673e-03	k: 1025	n:700000
KS ci ratio: 1.469614e-02	ci left: 9.158447e-02	ci right 9.294177e-02	k: 64583	n:700000
SLC26A9   700000 perm   332 sec   (2106 perm/sec)   p_kst 9.226143e-02   p_cons 1.464286e-03   p_joint 3.875714e-03

Joint ci ratio: 7.449781e-02	ci left: 3.739757e-03	ci right 4.030511e-03	k: 2757	n:710000
Cons ci ratio: 1.215234e-01	ci left: 1.374434e-03	ci right 1.553616e-03	k: 1038	n:710000
KS ci ratio: 1.458893e-02	ci left: 9.162769e-02	ci right 9.297564e-02	k: 65533	n:710000
SLC26A9   710000 perm   340 sec   (2089 perm/sec)   p_kst 9.230000e-02   p_cons 1.461972e-03   p_joint 3.883099e-03

Joint ci ratio: 7.485484e-02	ci left: 3.652373e-03	ci right 3.937754e-03	k: 2731	n:720000
Cons ci ratio: 1.199735e-01	ci left: 1.391713e-03	ci right 1.570670e-03	k: 1065	n:720000
KS ci ratio: 1.448270e-02	ci left: 9.168497e-02	ci right 9.302387e-02	k: 66494	n:720000
SLC26A9   720000 perm   347 sec   (2073 perm/sec)   p_kst 9.235278e-02   p_cons 1.479167e-03   p_joint 3.793056e-03

Joint ci ratio: 7.072683e-02	ci left: 4.042166e-03	ci right 4.339872e-03	k: 3058	n:730000
Cons ci ratio: 1.191935e-01	ci left: 1.391253e-03	ci right 1.568905e-03	k: 1079	n:730000
KS ci ratio: 1.438393e-02	ci left: 9.168064e-02	ci right 9.301027e-02	k: 67411	n:730000
SLC26A9   730000 perm   355 sec   (2057 perm/sec)   p_kst 9.234384e-02   p_cons 1.478082e-03   p_joint 4.189041e-03

Joint ci ratio: 7.141186e-02	ci left: 3.910547e-03	ci right 4.201464e-03	k: 3000	n:740000
Cons ci ratio: 1.184826e-01	ci left: 1.389497e-03	ci right 1.565793e-03	k: 1092	n:740000
KS ci ratio: 1.428013e-02	ci left: 9.175863e-02	ci right 9.307970e-02	k: 68389	n:740000
SLC26A9   740000 perm   362 sec   (2042 perm/sec)   p_kst 9.241757e-02   p_cons 1.475676e-03   p_joint 4.054054e-03

Joint ci ratio: 6.306353e-02	ci left: 4.963660e-03	ci right 5.288180e-03	k: 3843	n:750000
Cons ci ratio: 1.173601e-01	ci left: 1.398145e-03	ci right 1.573741e-03	k: 1113	n:750000
KS ci ratio: 1.417799e-02	ci left: 9.184121e-02	ci right 9.315394e-02	k: 69372	n:750000
SLC26A9   750000 perm   370 sec   (2028 perm/sec)   p_kst 9.249600e-02   p_cons 1.484000e-03   p_joint 5.124000e-03

Joint ci ratio: 6.262508e-02	ci left: 4.968285e-03	ci right 5.290768e-03	k: 3897	n:760000
Cons ci ratio: 1.168372e-01	ci left: 1.392521e-03	ci right 1.566578e-03	k: 1123	n:760000
KS ci ratio: 1.408374e-02	ci left: 9.185345e-02	ci right 9.315755e-02	k: 70303	n:760000
SLC26A9   760000 perm   378 sec   (2011 perm/sec)   p_kst 9.250395e-02   p_cons 1.477632e-03   p_joint 5.127632e-03

Joint ci ratio: 6.239432e-02	ci left: 4.940833e-03	ci right 5.260310e-03	k: 3926	n:770000
Cons ci ratio: 1.162700e-01	ci left: 1.388305e-03	ci right 1.560935e-03	k: 1134	n:770000
KS ci ratio: 1.399318e-02	ci left: 9.184339e-02	ci right 9.313890e-02	k: 71217	n:770000
SLC26A9   770000 perm   387 sec   (1992 perm/sec)   p_kst 9.248961e-02   p_cons 1.472727e-03   p_joint 5.098701e-03

Joint ci ratio: 6.236446e-02	ci left: 4.882533e-03	ci right 5.198083e-03	k: 3930	n:780000
Cons ci ratio: 1.154087e-01	ci left: 1.391670e-03	ci right 1.563349e-03	k: 1151	n:780000
KS ci ratio: 1.390435e-02	ci left: 9.183361e-02	ci right 9.312070e-02	k: 72131	n:780000
SLC26A9   780000 perm   394 sec   (1978 perm/sec)   p_kst 9.247564e-02   p_cons 1.475641e-03   p_joint 5.038462e-03

Joint ci ratio: 6.330386e-02	ci left: 4.677431e-03	ci right 4.984445e-03	k: 3815	n:790000
Cons ci ratio: 1.147138e-01	ci left: 1.391265e-03	ci right 1.561791e-03	k: 1165	n:790000
KS ci ratio: 1.381792e-02	ci left: 9.181528e-02	ci right 9.309404e-02	k: 73038	n:790000
SLC26A9   790000 perm   402 sec   (1964 perm/sec)   p_kst 9.245316e-02   p_cons 1.474684e-03   p_joint 4.829114e-03

Joint ci ratio: 6.224916e-02	ci left: 4.778920e-03	ci right 5.087182e-03	k: 3945	n:800000
Cons ci ratio: 1.139830e-01	ci left: 1.392088e-03	ci right 1.561554e-03	k: 1180	n:800000
KS ci ratio: 1.373165e-02	ci left: 9.181487e-02	ci right 9.308558e-02	k: 73959	n:800000
SLC26A9   800000 perm   410 sec   (1951 perm/sec)   p_kst 9.244875e-02   p_cons 1.475000e-03   p_joint 4.931250e-03

Joint ci ratio: 6.178083e-02	ci left: 4.792847e-03	ci right 5.099598e-03	k: 4005	n:810000
Cons ci ratio: 1.131712e-01	ci left: 1.395294e-03	ci right 1.563859e-03	k: 1197	n:810000
KS ci ratio: 1.364527e-02	ci left: 9.183542e-02	ci right 9.309836e-02	k: 74897	n:810000
SLC26A9   810000 perm   418 sec   (1936 perm/sec)   p_kst 9.246543e-02   p_cons 1.477778e-03   p_joint 4.944444e-03

Joint ci ratio: 6.142166e-02	ci left: 4.790832e-03	ci right 5.095608e-03	k: 4052	n:820000
Cons ci ratio: 1.126555e-01	ci left: 1.391313e-03	ci right 1.558581e-03	k: 1208	n:820000
KS ci ratio: 1.355892e-02	ci left: 9.187495e-02	ci right 9.313037e-02	k: 75851	n:820000
SLC26A9   820000 perm   426 sec   (1923 perm/sec)   p_kst 9.250122e-02   p_cons 1.473171e-03   p_joint 4.941463e-03

Joint ci ratio: 6.331960e-02	ci left: 4.450810e-03	ci right 4.743025e-03	k: 3814	n:830000
Cons ci ratio: 1.119630e-01	ci left: 1.392115e-03	ci right 1.558383e-03	k: 1223	n:830000
KS ci ratio: 1.347699e-02	ci left: 9.187871e-02	ci right 9.312654e-02	k: 76776	n:830000
SLC26A9   830000 perm   434 sec   (1910 perm/sec)   p_kst 9.250120e-02   p_cons 1.473494e-03   p_joint 4.595181e-03

Joint ci ratio: 6.278626e-02	ci left: 4.473987e-03	ci right 4.765159e-03	k: 3879	n:840000
Cons ci ratio: 1.109697e-01	ci left: 1.401003e-03	ci right 1.566751e-03	k: 1245	n:840000
KS ci ratio: 1.339369e-02	ci left: 9.191802e-02	ci right 9.315860e-02	k: 77731	n:840000
SLC26A9   840000 perm   443 sec   (1898 perm/sec)   p_kst 9.253690e-02   p_cons 1.482143e-03   p_joint 4.617857e-03

Joint ci ratio: 6.271495e-02	ci left: 4.431771e-03	ci right 4.719856e-03	k: 3888	n:850000
Cons ci ratio: 1.104394e-01	ci left: 1.398247e-03	ci right 1.562827e-03	k: 1257	n:850000
KS ci ratio: 1.331358e-02	ci left: 9.193531e-02	ci right 9.316865e-02	k: 78668	n:850000
SLC26A9   850000 perm   451 sec   (1885 perm/sec)   p_kst 9.255059e-02   p_cons 1.478824e-03   p_joint 4.574118e-03

Joint ci ratio: 6.245901e-02	ci left: 4.416865e-03	ci right 4.702767e-03	k: 3920	n:860000
Cons ci ratio: 1.097005e-01	ci left: 1.401212e-03	ci right 1.564966e-03	k: 1274	n:860000
KS ci ratio: 1.323252e-02	ci left: 9.198236e-02	ci right 9.320876e-02	k: 79631	n:860000
SLC26A9   860000 perm   460 sec   (1871 perm/sec)   p_kst 9.259419e-02   p_cons 1.481395e-03   p_joint 4.558140e-03

Joint ci ratio: 6.279128e-02	ci left: 4.319701e-03	ci right 4.600855e-03	k: 3879	n:870000
Cons ci ratio: 1.092305e-01	ci left: 1.397403e-03	ci right 1.559968e-03	k: 1285	n:870000
KS ci ratio: 1.315634e-02	ci left: 9.198480e-02	ci right 9.320412e-02	k: 80556	n:870000
SLC26A9   870000 perm   468 sec   (1859 perm/sec)   p_kst 9.259310e-02   p_cons 1.477011e-03   p_joint 4.458621e-03

Joint ci ratio: 6.251834e-02	ci left: 4.308644e-03	ci right 4.587815e-03	k: 3913	n:880000
Cons ci ratio: 1.085990e-01	ci left: 1.398105e-03	ci right 1.559750e-03	k: 1300	n:880000
KS ci ratio: 1.308499e-02	ci left: 9.194189e-02	ci right 9.315398e-02	k: 81441	n:880000
SLC26A9   880000 perm   477 sec   (1846 perm/sec)   p_kst 9.254659e-02   p_cons 1.477273e-03   p_joint 4.446591e-03

Joint ci ratio: 6.235212e-02	ci left: 4.283458e-03	ci right 4.560233e-03	k: 3934	n:890000
Cons ci ratio: 1.081843e-01	ci left: 1.393327e-03	ci right 1.553766e-03	k: 1310	n:890000
KS ci ratio: 1.301306e-02	ci left: 9.192236e-02	ci right 9.312748e-02	k: 82346	n:890000
SLC26A9   890000 perm   485 sec   (1835 perm/sec)   p_kst 9.252360e-02   p_cons 1.471910e-03   p_joint 4.420225e-03

Joint ci ratio: 6.244138e-02	ci left: 4.223828e-03	ci right 4.497155e-03	k: 3923	n:900000
Cons ci ratio: 1.074895e-01	ci left: 1.396225e-03	ci right 1.555900e-03	k: 1327	n:900000
KS ci ratio: 1.294127e-02	ci left: 9.191658e-02	ci right 9.311493e-02	k: 83263	n:900000
SLC26A9   900000 perm   494 sec   (1822 perm/sec)   p_kst 9.251444e-02   p_cons 1.474444e-03   p_joint 4.358889e-03

Joint ci ratio: 6.338252e-02	ci left: 4.053015e-03	ci right 4.319387e-03	k: 3808	n:910000
Cons ci ratio: 1.071275e-01	ci left: 1.390507e-03	ci right 1.548958e-03	k: 1336	n:910000
KS ci ratio: 1.286754e-02	ci left: 9.195149e-02	ci right 9.314341e-02	k: 84217	n:910000
SLC26A9   910000 perm   502 sec   (1811 perm/sec)   p_kst 9.254615e-02   p_cons 1.468132e-03   p_joint 4.184615e-03

Joint ci ratio: 6.388270e-02	ci left: 3.945844e-03	ci right 4.207294e-03	k: 3749	n:920000
Cons ci ratio: 1.066105e-01	ci left: 1.389145e-03	ci right 1.546629e-03	k: 1349	n:920000
KS ci ratio: 1.279754e-02	ci left: 9.195314e-02	ci right 9.313856e-02	k: 85141	n:920000
SLC26A9   920000 perm   512 sec   (1798 perm/sec)   p_kst 9.254457e-02   p_cons 1.466304e-03   p_joint 4.075000e-03

Joint ci ratio: 6.355314e-02	ci left: 3.944683e-03	ci right 4.204658e-03	k: 3788	n:930000
Cons ci ratio: 1.058292e-01	ci left: 1.395142e-03	ci right 1.552075e-03	k: 1369	n:930000
KS ci ratio: 1.272809e-02	ci left: 9.196228e-02	ci right 9.314133e-02	k: 86072	n:930000
SLC26A9   930000 perm   521 sec   (1787 perm/sec)   p_kst 9.255054e-02   p_cons 1.472043e-03   p_joint 4.073118e-03

Joint ci ratio: 6.436983e-02	ci left: 3.803262e-03	ci right 4.057257e-03	k: 3693	n:940000
Cons ci ratio: 9.929361e-02	ci left: 1.573109e-03	ci right 1.738497e-03	k: 1555	n:940000
KS ci ratio: 1.266354e-02	ci left: 9.192138e-02	ci right 9.309389e-02	k: 86956	n:940000
SLC26A9   940000 perm   529 sec   (1776 perm/sec)   p_kst 9.250638e-02   p_cons 1.654255e-03   p_joint 3.928723e-03

Outputting figure to mutsig2_images.part000000000160/SLC26A9.5_2752_940000_0.092506_0.0016543_0.0039287.png
                gene_name: SLC26A9
               theta_stop: 0.099 
                    nperm: 940000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.0017 
      ci_cons_bounds_left: 0.0016 
     ci_cons_bounds_right: 0.0017 
                  p_joint: 0.0039 
     ci_joint_bounds_left: 0.0038 
    ci_joint_bounds_right: 0.0041 

Current progress: 20 percent done.
SLC2A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.207662e-02	ci left: 7.506950e-01	ci right 7.675538e-01	k: 7592	n:10000
Cons ci ratio: 2.851016e-02	ci left: 6.445828e-01	ci right 6.633275e-01	k: 6540	n:10000
KS ci ratio: 2.716754e-02	ci left: 6.662236e-01	ci right 6.846741e-01	k: 6755	n:10000
SLC2A10   10000 perm   2 sec   (5669 perm/sec)   p_kst 6.755000e-01   p_cons 6.540000e-01   p_joint 7.592000e-01

Outputting figure to mutsig2_images.part000000000160/SLC2A10.5_1646_10000_0.6755_0.654_0.7592.png
                gene_name: SLC2A10
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 22 percent done.
SLC2A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.339341e-02	ci left: 2.677498e-01	ci right 2.853805e-01	k: 2765	n:10000
Cons ci ratio: 1.416829e-01	ci left: 6.604181e-02	ci right 7.620974e-02	k: 710	n:10000
KS ci ratio: 2.514891e-02	ci left: 6.993822e-01	ci right 7.172963e-01	k: 7084	n:10000
SLC2A2   10000 perm   2 sec   (5634 perm/sec)   p_kst 7.084000e-01   p_cons 7.100000e-02   p_joint 2.765000e-01

Joint ci ratio: 5.566270e-02	ci left: 1.931396e-01	ci right 2.042482e-01	k: 3973	n:20000
Cons ci ratio: 9.589858e-02	ci left: 7.339088e-02	ci right 8.083263e-02	k: 1541	n:20000
KS ci ratio: 1.788890e-02	ci left: 6.995810e-01	ci right 7.122591e-01	k: 14119	n:20000
SLC2A2   20000 perm   4 sec   (5012 perm/sec)   p_kst 7.059500e-01   p_cons 7.705000e-02   p_joint 1.986500e-01

Outputting figure to mutsig2_images.part000000000160/SLC2A2.5_1619_20000_0.70595_0.07705_0.19865.png
                gene_name: SLC2A2
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 24 percent done.
SLC34A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.542302e-02	ci left: 6.948436e-01	ci right 7.128375e-01	k: 7039	n:10000
Cons ci ratio: 5.176048e-02	ci left: 3.549581e-01	ci right 3.739210e-01	k: 3644	n:10000
KS ci ratio: 2.175058e-02	ci left: 7.561585e-01	ci right 7.728871e-01	k: 7646	n:10000
SLC34A2   10000 perm   2 sec   (5340 perm/sec)   p_kst 7.646000e-01   p_cons 3.644000e-01   p_joint 7.039000e-01

Outputting figure to mutsig2_images.part000000000160/SLC34A2.5_2121_10000_0.7646_0.3644_0.7039.png
                gene_name: SLC34A2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 25 percent done.
SLC35F1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.325328e-02	ci left: 7.309807e-01	ci right 7.482795e-01	k: 7397	n:10000
Cons ci ratio: 6.059909e-02	ci left: 2.859734e-01	ci right 3.039462e-01	k: 2949	n:10000
KS ci ratio: 3.012213e-02	ci left: 6.191440e-01	ci right 6.381810e-01	k: 6287	n:10000
SLC35F1   10000 perm   2 sec   (5479 perm/sec)   p_kst 6.287000e-01   p_cons 2.949000e-01   p_joint 7.397000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35F1.5_1259_10000_0.6287_0.2949_0.7397.png
                gene_name: SLC35F1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 27 percent done.
SLC35F3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.393873e-02	ci left: 1.412895e-01	ci right 1.553161e-01	k: 1482	n:10000
Cons ci ratio: 4.571844e-02	ci left: 4.138887e-01	ci right 4.333558e-01	k: 4236	n:10000
KS ci ratio: 1.209850e-01	ci left: 8.922438e-02	ci right 1.008128e-01	k: 949	n:10000
SLC35F3   10000 perm   2 sec   (5709 perm/sec)   p_kst 9.490000e-02   p_cons 4.236000e-01   p_joint 1.482000e-01

Joint ci ratio: 6.119201e-02	ci left: 1.650149e-01	ci right 1.754812e-01	k: 3404	n:20000
Cons ci ratio: 3.322045e-02	ci left: 4.035711e-01	ci right 4.172550e-01	k: 8208	n:20000
KS ci ratio: 8.498378e-02	ci left: 9.204927e-02	ci right 1.002686e-01	k: 1922	n:20000
SLC35F3   20000 perm   4 sec   (5067 perm/sec)   p_kst 9.610000e-02   p_cons 4.104000e-01   p_joint 1.702000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35F3.5_1505_20000_0.0961_0.4104_0.1702.png
                gene_name: SLC35F3
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 29 percent done.
SLC37A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.857979e-02	ci left: 4.980503e-01	ci right 5.177451e-01	k: 5079	n:10000
Cons ci ratio: 7.795978e-02	ci left: 1.938730e-01	ci right 2.097011e-01	k: 2017	n:10000
KS ci ratio: 2.868041e-02	ci left: 6.418666e-01	ci right 6.606452e-01	k: 6513	n:10000
SLC37A3   10000 perm   2 sec   (5725 perm/sec)   p_kst 6.513000e-01   p_cons 2.017000e-01   p_joint 5.079000e-01

Outputting figure to mutsig2_images.part000000000160/SLC37A3.5_1690_10000_0.6513_0.2017_0.5079.png
                gene_name: SLC37A3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 31 percent done.
SLC38A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.957012e-02	ci left: 7.925305e-01	ci right 8.082941e-01	k: 8005	n:10000
Cons ci ratio: 5.631335e-02	ci left: 3.171122e-01	ci right 3.355890e-01	k: 3263	n:10000
KS ci ratio: 8.625171e-03	ci left: 9.496057e-01	ci right 9.579274e-01	k: 9539	n:10000
SLC38A1   10000 perm   2 sec   (5504 perm/sec)   p_kst 9.539000e-01   p_cons 3.263000e-01   p_joint 8.005000e-01

Outputting figure to mutsig2_images.part000000000160/SLC38A1.5_1524_10000_0.9539_0.3263_0.8005.png
                gene_name: SLC38A1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 32 percent done.
SLC26A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.609487e-02	ci left: 4.099023e-01	ci right 4.293446e-01	k: 4196	n:10000
Cons ci ratio: 5.982159e-02	ci left: 2.913250e-01	ci right 3.093915e-01	k: 3003	n:10000
KS ci ratio: 6.526634e-02	ci left: 2.563695e-01	ci right 2.737676e-01	k: 2650	n:10000
SLC26A4   10000 perm   2 sec   (5454 perm/sec)   p_kst 2.650000e-01   p_cons 3.003000e-01   p_joint 4.196000e-01

Outputting figure to mutsig2_images.part000000000160/SLC26A4.4_2423_10000_0.265_0.3003_0.4196.png
                gene_name: SLC26A4
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 34 percent done.
SLC26A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.997344e-03	ci left: 9.814524e-01	ci right 9.864599e-01	k: 9841	n:10000
Cons ci ratio: 2.072783e-02	ci left: 7.732695e-01	ci right 7.895662e-01	k: 7815	n:10000
KS ci ratio: 3.589935e-02	ci left: 5.339763e-01	ci right 5.535982e-01	k: 5438	n:10000
SLC26A8   10000 perm   2 sec   (5483 perm/sec)   p_kst 5.438000e-01   p_cons 7.815000e-01   p_joint 9.841000e-01

Outputting figure to mutsig2_images.part000000000160/SLC26A8.4_2989_10000_0.5438_0.7815_0.9841.png
                gene_name: SLC26A8
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 36 percent done.
SLC27A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.334826e-02	ci left: 1.428581e-01	ci right 1.569465e-01	k: 1498	n:10000
Cons ci ratio: 5.044595e-02	ci left: 3.668915e-01	ci right 3.859806e-01	k: 3764	n:10000
KS ci ratio: 1.112712e-01	ci left: 1.042243e-01	ci right 1.166037e-01	k: 1103	n:10000
SLC27A5   10000 perm   2 sec   (6141 perm/sec)   p_kst 1.103000e-01   p_cons 3.764000e-01   p_joint 1.498000e-01

Joint ci ratio: 5.985149e-02	ci left: 1.712880e-01	ci right 1.819062e-01	k: 3531	n:20000
Cons ci ratio: 3.594941e-02	ci left: 3.660924e-01	ci right 3.795446e-01	k: 7456	n:20000
KS ci ratio: 7.935020e-02	ci left: 1.044183e-01	ci right 1.130958e-01	k: 2174	n:20000
SLC27A5   20000 perm   4 sec   (5450 perm/sec)   p_kst 1.087000e-01   p_cons 3.728000e-01   p_joint 1.765500e-01

Outputting figure to mutsig2_images.part000000000160/SLC27A5.4_2113_20000_0.1087_0.3728_0.17655.png
                gene_name: SLC27A5
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 37 percent done.
SLC28A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.261332e-02	ci left: 5.811882e-01	ci right 6.005589e-01	k: 5909	n:10000
KS ci ratio: 3.879644e-02	ci left: 4.952504e-01	ci right 5.149466e-01	k: 5051	n:10000
SLC28A1   10000 perm   2 sec   (5900 perm/sec)   p_kst 5.051000e-01   p_cons 5.909000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC28A1.4_2089_10000_0.5051_0.5909_1.png
                gene_name: SLC28A1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
SLC28A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.871987e-02	ci left: 2.369909e-01	ci right 2.539576e-01	k: 2454	n:10000
Cons ci ratio: 9.518550e-02	ci left: 1.380551e-01	ci right 1.519524e-01	k: 1449	n:10000
KS ci ratio: 4.957627e-02	ci left: 3.750495e-01	ci right 3.942177e-01	k: 3846	n:10000
SLC28A3   10000 perm   2 sec   (5542 perm/sec)   p_kst 3.846000e-01   p_cons 1.449000e-01   p_joint 2.454000e-01

Outputting figure to mutsig2_images.part000000000160/SLC28A3.4_2148_10000_0.3846_0.1449_0.2454.png
                gene_name: SLC28A3
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 41 percent done.
SLC2A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.674720e-02	ci left: 6.730726e-01	ci right 6.914211e-01	k: 6823	n:10000
Cons ci ratio: 1.606061e-02	ci left: 8.492710e-01	ci right 8.631208e-01	k: 8563	n:10000
KS ci ratio: 3.731132e-02	ci left: 5.147561e-01	ci right 5.344296e-01	k: 5246	n:10000
SLC2A4   10000 perm   2 sec   (6050 perm/sec)   p_kst 5.246000e-01   p_cons 8.563000e-01   p_joint 6.823000e-01

Outputting figure to mutsig2_images.part000000000160/SLC2A4.4_1574_10000_0.5246_0.8563_0.6823.png
                gene_name: SLC2A4
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 42 percent done.
SLC2A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.658537e-02	ci left: 8.410158e-01	ci right 8.551807e-01	k: 8482	n:10000
Cons ci ratio: 1.903571e-02	ci left: 8.013591e-01	ci right 8.168604e-01	k: 8092	n:10000
KS ci ratio: 2.799546e-02	ci left: 6.528339e-01	ci right 6.714715e-01	k: 6622	n:10000
SLC2A5   10000 perm   2 sec   (5991 perm/sec)   p_kst 6.622000e-01   p_cons 8.092000e-01   p_joint 8.482000e-01

Outputting figure to mutsig2_images.part000000000160/SLC2A5.4_1718_10000_0.6622_0.8092_0.8482.png
                gene_name: SLC2A5
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 44 percent done.
SLC35B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.783297e-02	ci left: 6.554508e-01	ci right 6.740531e-01	k: 6648	n:10000
Cons ci ratio: 5.247176e-02	ci left: 3.486956e-01	ci right 3.675871e-01	k: 3581	n:10000
KS ci ratio: 2.561827e-02	ci left: 6.916168e-01	ci right 7.096662e-01	k: 7007	n:10000
SLC35B3   10000 perm   2 sec   (6226 perm/sec)   p_kst 7.007000e-01   p_cons 3.581000e-01   p_joint 6.648000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35B3.4_1246_10000_0.7007_0.3581_0.6648.png
                gene_name: SLC35B3
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 46 percent done.
SLC36A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.373865e-02	ci left: 5.646388e-01	ci right 5.841179e-01	k: 5744	n:10000
Cons ci ratio: 9.371625e-02	ci left: 1.418777e-01	ci right 1.559275e-01	k: 1488	n:10000
KS ci ratio: 3.830297e-02	ci left: 5.016506e-01	ci right 5.213427e-01	k: 5115	n:10000
SLC36A4   10000 perm   2 sec   (6398 perm/sec)   p_kst 5.115000e-01   p_cons 1.488000e-01   p_joint 5.744000e-01

Outputting figure to mutsig2_images.part000000000160/SLC36A4.4_1559_10000_0.5115_0.1488_0.5744.png
                gene_name: SLC36A4
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 47 percent done.
SLC26A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.236641e-01	ci left: 8.562704e-02	ci right 9.701233e-02	k: 912	n:10000
Cons ci ratio: 2.188948e-02	ci left: 7.538312e-01	ci right 7.706157e-01	k: 7623	n:10000
KS ci ratio: 1.996961e-01	ci left: 3.338573e-02	ci right 4.088702e-02	k: 370	n:10000
SLC26A11   10000 perm   2 sec   (6351 perm/sec)   p_kst 3.700000e-02   p_cons 7.623000e-01   p_joint 9.120000e-02

Joint ci ratio: 8.269549e-02	ci left: 9.680801e-02	ci right 1.052084e-01	k: 2019	n:20000
Cons ci ratio: 1.521976e-02	ci left: 7.624393e-01	ci right 7.741826e-01	k: 15367	n:20000
KS ci ratio: 1.357013e-01	ci left: 3.732625e-02	ci right 4.280850e-02	k: 800	n:20000
SLC26A11   20000 perm   4 sec   (5635 perm/sec)   p_kst 4.000000e-02   p_cons 7.683500e-01   p_joint 1.009500e-01

Joint ci ratio: 6.722526e-02	ci left: 9.836743e-02	ci right 1.052432e-01	k: 3053	n:30000
Cons ci ratio: 1.251238e-02	ci left: 7.610662e-01	ci right 7.706823e-01	k: 22977	n:30000
KS ci ratio: 1.115033e-01	ci left: 3.735635e-02	ci right 4.180005e-02	k: 1186	n:30000
SLC26A11   30000 perm   6 sec   (5361 perm/sec)   p_kst 3.953333e-02   p_cons 7.659000e-01   p_joint 1.017667e-01

Joint ci ratio: 5.678564e-02	ci left: 1.034191e-01	ci right 1.094882e-01	k: 4257	n:40000
Cons ci ratio: 1.082697e-02	ci left: 7.620205e-01	ci right 7.703408e-01	k: 30648	n:40000
KS ci ratio: 9.570777e-02	ci left: 3.832041e-02	ci right 4.219670e-02	k: 1609	n:40000
SLC26A11   40000 perm   8 sec   (5093 perm/sec)   p_kst 4.022500e-02   p_cons 7.662000e-01   p_joint 1.064250e-01

Outputting figure to mutsig2_images.part000000000160/SLC26A11.3_1885_40000_0.040225_0.7662_0.10643.png
                gene_name: SLC26A11
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 49 percent done.
SLC26A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.439601e-02	ci left: 7.118940e-01	ci right 7.295772e-01	k: 7208	n:10000
KS ci ratio: 2.710561e-02	ci left: 6.672307e-01	ci right 6.856665e-01	k: 6765	n:10000
SLC26A3   10000 perm   2 sec   (5755 perm/sec)   p_kst 6.765000e-01   p_cons 7.208000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC26A3.3_2375_10000_0.6765_0.7208_1.png
                gene_name: SLC26A3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
SLC27A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.256777e-02	ci left: 4.489967e-01	ci right 4.686273e-01	k: 4588	n:10000
KS ci ratio: 2.472349e-02	ci left: 7.064443e-01	ci right 7.242301e-01	k: 7154	n:10000
SLC27A2   10000 perm   2 sec   (5642 perm/sec)   p_kst 7.154000e-01   p_cons 4.588000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC27A2.3_1903_10000_0.7154_0.4588_1.png
                gene_name: SLC27A2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
SLC29A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.840551e-02	ci left: 1.569877e-01	ci right 1.716084e-01	k: 1642	n:10000
Cons ci ratio: 9.446282e-02	ci left: 1.399172e-01	ci right 1.538892e-01	k: 1468	n:10000
KS ci ratio: 7.561906e-02	ci left: 2.037281e-01	ci right 2.198401e-01	k: 2117	n:10000
SLC29A3   10000 perm   2 sec   (6170 perm/sec)   p_kst 2.117000e-01   p_cons 1.468000e-01   p_joint 1.642000e-01

Outputting figure to mutsig2_images.part000000000160/SLC29A3.3_1456_10000_0.2117_0.1468_0.1642.png
                gene_name: SLC29A3
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 54 percent done.
SLC2A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.596939e-02	ci left: 3.197920e-01	ci right 3.383077e-01	k: 3290	n:10000
Cons ci ratio: 8.549534e-02	ci left: 1.662222e-01	ci right 1.811684e-01	k: 1736	n:10000
KS ci ratio: 4.600038e-02	ci left: 4.108988e-01	ci right 4.303474e-01	k: 4206	n:10000
SLC2A12   10000 perm   2 sec   (5969 perm/sec)   p_kst 4.206000e-01   p_cons 1.736000e-01   p_joint 3.290000e-01

Outputting figure to mutsig2_images.part000000000160/SLC2A12.3_1874_10000_0.4206_0.1736_0.329.png
                gene_name: SLC2A12
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 56 percent done.
SLC2A13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.364833e-01	ci left: 7.097701e-02	ci right 8.147145e-02	k: 761	n:10000
Cons ci ratio: 5.323349e-02	ci left: 3.421367e-01	ci right 3.609498e-01	k: 3515	n:10000
KS ci ratio: 1.278700e-01	ci left: 8.038196e-02	ci right 9.146065e-02	k: 858	n:10000
SLC2A13   10000 perm   2 sec   (6081 perm/sec)   p_kst 8.580000e-02   p_cons 3.515000e-01   p_joint 7.610000e-02

Joint ci ratio: 6.415587e-02	ci left: 1.522299e-01	ci right 1.623700e-01	k: 3145	n:20000
Cons ci ratio: 3.724467e-02	ci left: 3.497587e-01	ci right 3.630831e-01	k: 7128	n:20000
KS ci ratio: 9.237437e-02	ci left: 7.877186e-02	ci right 8.645000e-02	k: 1651	n:20000
SLC2A13   20000 perm   4 sec   (5409 perm/sec)   p_kst 8.255000e-02   p_cons 3.564000e-01   p_joint 1.572500e-01

Outputting figure to mutsig2_images.part000000000160/SLC2A13.3_1987_20000_0.08255_0.3564_0.15725.png
                gene_name: SLC2A13
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 58 percent done.
SLC30A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.236599e-01	ci left: 2.646035e-02	ci right 3.321723e-02	k: 297	n:10000
Cons ci ratio: 8.974894e-02	ci left: 1.529626e-01	ci right 1.674359e-01	k: 1601	n:10000
KS ci ratio: 2.380421e-01	ci left: 2.325212e-02	ci right 2.962780e-02	k: 263	n:10000
SLC30A1   10000 perm   2 sec   (6000 perm/sec)   p_kst 2.630000e-02   p_cons 1.601000e-01   p_joint 2.970000e-02

Joint ci ratio: 1.786746e-01	ci left: 2.139724e-02	ci right 2.564284e-02	k: 469	n:20000
Cons ci ratio: 6.444783e-02	ci left: 1.510458e-01	ci right 1.611544e-01	k: 3121	n:20000
KS ci ratio: 1.765700e-01	ci left: 2.192330e-02	ci right 2.621660e-02	k: 480	n:20000
SLC30A1   20000 perm   4 sec   (5408 perm/sec)   p_kst 2.400000e-02   p_cons 1.560500e-01   p_joint 2.345000e-02

Joint ci ratio: 1.867970e-01	ci left: 1.311422e-02	ci right 1.584766e-02	k: 433	n:30000
Cons ci ratio: 5.287615e-02	ci left: 1.507238e-01	ci right 1.589432e-01	k: 4644	n:30000
KS ci ratio: 1.438130e-01	ci left: 2.242630e-02	ci right 2.593335e-02	k: 724	n:30000
SLC30A1   30000 perm   6 sec   (5171 perm/sec)   p_kst 2.413333e-02   p_cons 1.548000e-01   p_joint 1.443333e-02

Joint ci ratio: 1.321460e-01	ci left: 2.010091e-02	ci right 2.296914e-02	k: 860	n:40000
Cons ci ratio: 4.623615e-02	ci left: 1.487916e-01	ci right 1.558589e-01	k: 6092	n:40000
KS ci ratio: 1.250553e-01	ci left: 2.247381e-02	ci right 2.549584e-02	k: 958	n:40000
SLC30A1   40000 perm   8 sec   (4975 perm/sec)   p_kst 2.395000e-02   p_cons 1.523000e-01   p_joint 2.150000e-02

Joint ci ratio: 1.312779e-01	ci left: 1.636874e-02	ci right 1.868776e-02	k: 875	n:50000
Cons ci ratio: 4.125673e-02	ci left: 1.497755e-01	ci right 1.561048e-01	k: 7646	n:50000
KS ci ratio: 1.108972e-01	ci left: 2.302638e-02	ci right 2.574922e-02	k: 1218	n:50000
SLC30A1   50000 perm   10 sec   (4864 perm/sec)   p_kst 2.436000e-02   p_cons 1.529200e-01   p_joint 1.750000e-02

Joint ci ratio: 1.342207e-01	ci left: 1.307513e-02	ci right 1.497231e-02	k: 840	n:60000
Cons ci ratio: 3.752799e-02	ci left: 1.509715e-01	ci right 1.567621e-01	k: 9231	n:60000
KS ci ratio: 1.013344e-01	ci left: 2.309890e-02	ci right 2.558073e-02	k: 1459	n:60000
SLC30A1   60000 perm   13 sec   (4761 perm/sec)   p_kst 2.431667e-02   p_cons 1.538500e-01   p_joint 1.400000e-02

Joint ci ratio: 1.247921e-01	ci left: 1.303191e-02	ci right 1.478015e-02	k: 972	n:70000
Cons ci ratio: 3.473022e-02	ci left: 1.512908e-01	ci right 1.566522e-01	k: 10777	n:70000
KS ci ratio: 9.480141e-02	ci left: 2.271137e-02	ci right 2.498547e-02	k: 1668	n:70000
SLC30A1   70000 perm   15 sec   (4671 perm/sec)   p_kst 2.382857e-02   p_cons 1.539571e-01   p_joint 1.388571e-02

Joint ci ratio: 9.187289e-02	ci left: 2.122681e-02	ci right 2.328304e-02	k: 1779	n:80000
Cons ci ratio: 3.131107e-02	ci left: 1.612538e-01	ci right 1.663956e-01	k: 13105	n:80000
KS ci ratio: 8.852259e-02	ci left: 2.286487e-02	ci right 2.499484e-02	k: 1913	n:80000
SLC30A1   80000 perm   18 sec   (4556 perm/sec)   p_kst 2.391250e-02   p_cons 1.638125e-01   p_joint 2.223750e-02

Outputting figure to mutsig2_images.part000000000160/SLC30A1.3_1532_80000_0.023912_0.16381_0.022238.png
                gene_name: SLC30A1
               theta_stop: 0.092 
                    nperm: 80000 
                     p_ks: 0.024 
        ci_ks_bounds_left: 0.023 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 59 percent done.
SLC30A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.326741e-03	ci left: 9.714304e-01	ci right 9.776890e-01	k: 9747	n:10000
Cons ci ratio: 5.291978e-02	ci left: 3.448197e-01	ci right 3.636653e-01	k: 3542	n:10000
KS ci ratio: 2.036945e-02	ci left: 7.792477e-01	ci right 7.953845e-01	k: 7874	n:10000
SLC30A3   10000 perm   2 sec   (6398 perm/sec)   p_kst 7.874000e-01   p_cons 3.542000e-01   p_joint 9.747000e-01

Outputting figure to mutsig2_images.part000000000160/SLC30A3.3_1199_10000_0.7874_0.3542_0.9747.png
                gene_name: SLC30A3
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 61 percent done.
SLC30A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.431310e-02	ci left: 3.330967e-01	ci right 3.517951e-01	k: 3424	n:10000
Cons ci ratio: 1.708612e-01	ci left: 4.571402e-02	ci right 5.435051e-02	k: 499	n:10000
KS ci ratio: 6.214964e-02	ci left: 2.756709e-01	ci right 2.934548e-01	k: 2845	n:10000
SLC30A6   10000 perm   2 sec   (6412 perm/sec)   p_kst 2.845000e-01   p_cons 4.990000e-02   p_joint 3.424000e-01

Joint ci ratio: 4.917686e-02	ci left: 2.351352e-01	ci right 2.470402e-01	k: 4821	n:20000
Cons ci ratio: 1.221107e-01	ci left: 4.600048e-02	ci right 5.203150e-02	k: 979	n:20000
KS ci ratio: 4.431646e-02	ci left: 2.749267e-01	ci right 2.874370e-01	k: 5623	n:20000
SLC30A6   20000 perm   4 sec   (5664 perm/sec)   p_kst 2.811500e-01   p_cons 4.895000e-02   p_joint 2.410500e-01

Joint ci ratio: 4.014920e-02	ci left: 2.362682e-01	ci right 2.459820e-01	k: 7233	n:30000
Cons ci ratio: 9.966803e-02	ci left: 4.658437e-02	ci right 5.150343e-02	k: 1470	n:30000
KS ci ratio: 3.616343e-02	ci left: 2.763162e-01	ci right 2.865262e-01	k: 8442	n:30000
SLC30A6   30000 perm   6 sec   (5391 perm/sec)   p_kst 2.814000e-01   p_cons 4.900000e-02   p_joint 2.411000e-01

Outputting figure to mutsig2_images.part000000000160/SLC30A6.3_1442_30000_0.2814_0.049_0.2411.png
                gene_name: SLC30A6
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 63 percent done.
SLC35A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.589344e-02	ci left: 3.203876e-01	ci right 3.389118e-01	k: 3296	n:10000
Cons ci ratio: 8.991607e-02	ci left: 1.524718e-01	ci right 1.669270e-01	k: 1596	n:10000
KS ci ratio: 4.415312e-02	ci left: 4.309378e-01	ci right 4.504967e-01	k: 4407	n:10000
SLC35A1   10000 perm   1 sec   (6669 perm/sec)   p_kst 4.407000e-01   p_cons 1.596000e-01   p_joint 3.296000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35A1.3_1046_10000_0.4407_0.1596_0.3296.png
                gene_name: SLC35A1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 64 percent done.
SLC35D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.561906e-02	ci left: 2.037281e-01	ci right 2.198401e-01	k: 2117	n:10000
KS ci ratio: 2.399040e-02	ci left: 7.186579e-01	ci right 7.362094e-01	k: 7275	n:10000
SLC35D1   10000 perm   2 sec   (6479 perm/sec)   p_kst 7.275000e-01   p_cons 2.117000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC35D1.3_1116_10000_0.7275_0.2117_1.png
                gene_name: SLC35D1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
SLC35D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.956843e-02	ci left: 1.874712e-01	ci right 2.031067e-01	k: 1952	n:10000
Cons ci ratio: 9.651276e-02	ci left: 1.347239e-01	ci right 1.484856e-01	k: 1415	n:10000
KS ci ratio: 8.346729e-02	ci left: 1.731041e-01	ci right 1.882824e-01	k: 1806	n:10000
SLC35D2   10000 perm   2 sec   (6528 perm/sec)   p_kst 1.806000e-01   p_cons 1.415000e-01   p_joint 1.952000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35D2.3_1062_10000_0.1806_0.1415_0.1952.png
                gene_name: SLC35D2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 68 percent done.
SLC37A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.578270e-01	ci left: 5.349797e-02	ci right 6.276153e-02	k: 580	n:10000
Cons ci ratio: 2.268173e-01	ci left: 2.570435e-02	ci right 3.237377e-02	k: 289	n:10000
KS ci ratio: 1.065542e-01	ci left: 1.128131e-01	ci right 1.256096e-01	k: 1191	n:10000
SLC37A2   10000 perm   2 sec   (6096 perm/sec)   p_kst 1.191000e-01   p_cons 2.890000e-02   p_joint 5.800000e-02

Joint ci ratio: 1.246736e-01	ci left: 4.415643e-02	ci right 5.007613e-02	k: 941	n:20000
Cons ci ratio: 1.761951e-01	ci left: 2.201898e-02	ci right 2.632088e-02	k: 482	n:20000
KS ci ratio: 7.377426e-02	ci left: 1.191178e-01	ci right 1.282919e-01	k: 2473	n:20000
SLC37A2   20000 perm   4 sec   (5434 perm/sec)   p_kst 1.236500e-01   p_cons 2.410000e-02   p_joint 4.705000e-02

Joint ci ratio: 7.602746e-02	ci left: 7.829692e-02	ci right 8.451776e-02	k: 2441	n:30000
Cons ci ratio: 1.430065e-01	ci left: 2.268361e-02	ci right 2.620931e-02	k: 732	n:30000
KS ci ratio: 6.097023e-02	ci left: 1.173955e-01	ci right 1.248114e-01	k: 3632	n:30000
SLC37A2   30000 perm   6 sec   (5176 perm/sec)   p_kst 1.210667e-01   p_cons 2.440000e-02   p_joint 8.136667e-02

Joint ci ratio: 6.295968e-02	ci left: 8.556159e-02	ci right 9.114834e-02	k: 3533	n:40000
Cons ci ratio: 1.144843e-01	ci left: 2.684254e-02	ci right 3.012639e-02	k: 1138	n:40000
KS ci ratio: 5.307657e-02	ci left: 1.168059e-01	ci right 1.231994e-01	k: 4799	n:40000
SLC37A2   40000 perm   8 sec   (5019 perm/sec)   p_kst 1.199750e-01   p_cons 2.845000e-02   p_joint 8.832500e-02

Joint ci ratio: 5.901732e-02	ci left: 7.868210e-02	ci right 8.348667e-02	k: 4053	n:50000
Cons ci ratio: 1.025372e-01	ci left: 2.694191e-02	ci right 2.987318e-02	k: 1419	n:50000
KS ci ratio: 4.795125e-02	ci left: 1.150658e-01	ci right 1.207387e-01	k: 5894	n:50000
SLC37A2   50000 perm   10 sec   (4900 perm/sec)   p_kst 1.178800e-01   p_cons 2.838000e-02   p_joint 8.106000e-02

Joint ci ratio: 5.947335e-02	ci left: 6.550515e-02	ci right 6.953680e-02	k: 4050	n:60000
Cons ci ratio: 9.374505e-02	ci left: 2.698764e-02	ci right 2.965825e-02	k: 1698	n:60000
KS ci ratio: 4.374531e-02	ci left: 1.154453e-01	ci right 1.206250e-01	k: 7081	n:60000
SLC37A2   60000 perm   13 sec   (4782 perm/sec)   p_kst 1.180167e-01   p_cons 2.830000e-02   p_joint 6.750000e-02

Outputting figure to mutsig2_images.part000000000160/SLC37A2.3_1610_60000_0.11802_0.0283_0.0675.png
                gene_name: SLC37A2
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.070 

Current progress: 69 percent done.
SLC38A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.034749e-02	ci left: 4.756597e-01	ci right 4.953487e-01	k: 4855	n:10000
Cons ci ratio: 8.664246e-03	ci left: 9.491889e-01	ci right 9.575444e-01	k: 9535	n:10000
KS ci ratio: 4.657119e-02	ci left: 4.049202e-01	ci right 4.243295e-01	k: 4146	n:10000
SLC38A11   10000 perm   2 sec   (6333 perm/sec)   p_kst 4.146000e-01   p_cons 9.535000e-01   p_joint 4.855000e-01

Outputting figure to mutsig2_images.part000000000160/SLC38A11.3_1191_10000_0.4146_0.9535_0.4855.png
                gene_name: SLC38A11
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 71 percent done.
SLC27A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.407281e-02	ci left: 3.350832e-01	ci right 3.538075e-01	k: 3444	n:10000
Cons ci ratio: 3.607332e-02	ci left: 5.315730e-01	ci right 5.512029e-01	k: 5414	n:10000
KS ci ratio: 1.162440e-01	ci left: 9.613473e-02	ci right 1.080982e-01	k: 1020	n:10000
SLC27A1   10000 perm   2 sec   (6281 perm/sec)   p_kst 1.020000e-01   p_cons 5.414000e-01   p_joint 3.444000e-01

Joint ci ratio: 4.236086e-02	ci left: 2.934050e-01	ci right 3.061533e-01	k: 5995	n:20000
Cons ci ratio: 2.556851e-02	ci left: 5.333125e-01	ci right 5.471758e-01	k: 10805	n:20000
KS ci ratio: 8.240086e-02	ci left: 9.744601e-02	ci right 1.058702e-01	k: 2032	n:20000
SLC27A1   20000 perm   4 sec   (5606 perm/sec)   p_kst 1.016000e-01   p_cons 5.402500e-01   p_joint 2.997500e-01

Outputting figure to mutsig2_images.part000000000160/SLC27A1.2_1989_20000_0.1016_0.54025_0.29975.png
                gene_name: SLC27A1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 73 percent done.
SLC28A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.647702e-02	ci left: 2.493471e-01	ci right 2.665941e-01	k: 2579	n:10000
Cons ci ratio: 9.397593e-02	ci left: 1.411914e-01	ci right 1.552142e-01	k: 1481	n:10000
KS ci ratio: 4.143695e-02	ci left: 4.623746e-01	ci right 4.820416e-01	k: 4722	n:10000
SLC28A2   10000 perm   2 sec   (6119 perm/sec)   p_kst 4.722000e-01   p_cons 1.481000e-01   p_joint 2.579000e-01

Outputting figure to mutsig2_images.part000000000160/SLC28A2.2_2045_10000_0.4722_0.1481_0.2579.png
                gene_name: SLC28A2
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 75 percent done.
SLC30A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.361983e-02	ci left: 4.369227e-01	ci right 4.565083e-01	k: 4467	n:10000
Cons ci ratio: 7.944208e-02	ci left: 1.879635e-01	ci right 2.036141e-01	k: 1957	n:10000
KS ci ratio: 2.973629e-02	ci left: 6.251744e-01	ci right 6.441471e-01	k: 6347	n:10000
SLC30A4   10000 perm   2 sec   (6452 perm/sec)   p_kst 6.347000e-01   p_cons 1.957000e-01   p_joint 4.467000e-01

Outputting figure to mutsig2_images.part000000000160/SLC30A4.2_1318_10000_0.6347_0.1957_0.4467.png
                gene_name: SLC30A4
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 76 percent done.
SLC30A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.153289e-02	ci left: 9.149216e-01	ci right 9.256321e-01	k: 9204	n:10000
Cons ci ratio: 1.942915e-02	ci left: 7.948639e-01	ci right 8.105594e-01	k: 8028	n:10000
KS ci ratio: 2.322914e-02	ci left: 7.313849e-01	ci right 7.486751e-01	k: 7401	n:10000
SLC30A5   10000 perm   2 sec   (6117 perm/sec)   p_kst 7.401000e-01   p_cons 8.028000e-01   p_joint 9.204000e-01

Outputting figure to mutsig2_images.part000000000160/SLC30A5.2_2450_10000_0.7401_0.8028_0.9204.png
                gene_name: SLC30A5
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.93 

Current progress: 78 percent done.
SLC33A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.106525e-01	ci left: 1.052972e-01	ci right 1.177301e-01	k: 1114	n:10000
Cons ci ratio: 3.144643e-01	ci left: 1.289402e-02	ci right 1.779424e-02	k: 152	n:10000
KS ci ratio: 2.644396e-01	ci left: 1.865372e-02	ci right 2.442970e-02	k: 214	n:10000
SLC33A1   10000 perm   2 sec   (6509 perm/sec)   p_kst 2.140000e-02   p_cons 1.520000e-02   p_joint 1.114000e-01

Joint ci ratio: 7.740712e-02	ci left: 1.092336e-01	ci right 1.180791e-01	k: 2272	n:20000
Cons ci ratio: 2.209035e-01	ci left: 1.378643e-02	ci right 1.725651e-02	k: 309	n:20000
KS ci ratio: 1.890231e-01	ci left: 1.905770e-02	ci right 2.308322e-02	k: 420	n:20000
SLC33A1   20000 perm   3 sec   (5752 perm/sec)   p_kst 2.100000e-02   p_cons 1.545000e-02   p_joint 1.136000e-01

Joint ci ratio: 6.323967e-02	ci left: 1.099315e-01	ci right 1.171436e-01	k: 3405	n:30000
Cons ci ratio: 1.825744e-01	ci left: 1.375047e-02	ci right 1.654458e-02	k: 453	n:30000
KS ci ratio: 1.552825e-01	ci left: 1.918287e-02	ci right 2.244419e-02	k: 623	n:30000
SLC33A1   30000 perm   5 sec   (5457 perm/sec)   p_kst 2.076667e-02   p_cons 1.510000e-02   p_joint 1.135000e-01

Joint ci ratio: 5.532779e-02	ci left: 1.084066e-01	ci right 1.145999e-01	k: 4459	n:40000
Cons ci ratio: 1.589612e-01	ci left: 1.378358e-02	ci right 1.618759e-02	k: 598	n:40000
KS ci ratio: 1.376379e-01	ci left: 1.850552e-02	ci right 2.126481e-02	k: 794	n:40000
SLC33A1   40000 perm   8 sec   (5253 perm/sec)   p_kst 1.985000e-02   p_cons 1.495000e-02   p_joint 1.114750e-01

Joint ci ratio: 4.966744e-02	ci left: 1.080218e-01	ci right 1.135435e-01	k: 5538	n:50000
Cons ci ratio: 1.431285e-01	ci left: 1.372124e-02	ci right 1.585564e-02	k: 738	n:50000
KS ci ratio: 1.219081e-01	ci left: 1.902359e-02	ci right 2.151254e-02	k: 1012	n:50000
SLC33A1   50000 perm   10 sec   (5107 perm/sec)   p_kst 2.024000e-02   p_cons 1.476000e-02   p_joint 1.107600e-01

Joint ci ratio: 4.519790e-02	ci left: 1.088765e-01	ci right 1.139278e-01	k: 6683	n:60000
Cons ci ratio: 1.320865e-01	ci left: 1.351033e-02	ci right 1.543705e-02	k: 867	n:60000
KS ci ratio: 1.116433e-01	ci left: 1.900818e-02	ci right 2.127190e-02	k: 1207	n:60000
SLC33A1   60000 perm   12 sec   (4983 perm/sec)   p_kst 2.011667e-02   p_cons 1.445000e-02   p_joint 1.113833e-01

Joint ci ratio: 4.161431e-02	ci left: 1.101540e-01	ci right 1.148496e-01	k: 7874	n:70000
Cons ci ratio: 1.200043e-01	ci left: 1.411255e-02	ci right 1.592798e-02	k: 1050	n:70000
KS ci ratio: 1.029648e-01	ci left: 1.924022e-02	ci right 2.134266e-02	k: 1419	n:70000
SLC33A1   70000 perm   14 sec   (4872 perm/sec)   p_kst 2.027143e-02   p_cons 1.500000e-02   p_joint 1.124857e-01

Joint ci ratio: 3.893152e-02	ci left: 1.102811e-01	ci right 1.146721e-01	k: 8997	n:80000
Cons ci ratio: 1.112308e-01	ci left: 1.443649e-02	ci right 1.614892e-02	k: 1222	n:80000
KS ci ratio: 9.710741e-02	ci left: 1.899224e-02	ci right 2.094279e-02	k: 1596	n:80000
SLC33A1   80000 perm   17 sec   (4722 perm/sec)   p_kst 1.995000e-02   p_cons 1.527500e-02   p_joint 1.124625e-01

Joint ci ratio: 3.666574e-02	ci left: 1.106189e-01	ci right 1.147616e-01	k: 10141	n:90000
Cons ci ratio: 1.043651e-01	ci left: 1.462726e-02	ci right 1.624864e-02	k: 1388	n:90000
KS ci ratio: 9.123371e-02	ci left: 1.918219e-02	ci right 2.102670e-02	k: 1808	n:90000
SLC33A1   90000 perm   19 sec   (4632 perm/sec)   p_kst 2.008889e-02   p_cons 1.542222e-02   p_joint 1.126778e-01

Joint ci ratio: 3.477182e-02	ci left: 1.107959e-01	ci right 1.147266e-01	k: 11275	n:100000
Cons ci ratio: 9.869598e-02	ci left: 1.476296e-02	ci right 1.630533e-02	k: 1552	n:100000
KS ci ratio: 8.594304e-02	ci left: 1.950339e-02	ci right 2.126458e-02	k: 2037	n:100000
SLC33A1   100000 perm   23 sec   (4356 perm/sec)   p_kst 2.037000e-02   p_cons 1.552000e-02   p_joint 1.127500e-01

Outputting figure to mutsig2_images.part000000000160/SLC33A1.2_1674_100000_0.02037_0.01552_0.11275.png
                gene_name: SLC33A1
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 80 percent done.
SLC34A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.214176e-02	ci left: 4.539876e-01	ci right 4.736335e-01	k: 4638	n:10000
Cons ci ratio: 6.782292e-02	ci left: 2.418334e-01	ci right 2.589122e-01	k: 2503	n:10000
KS ci ratio: 6.172504e-02	ci left: 2.784441e-01	ci right 2.962799e-01	k: 2873	n:10000
SLC34A1   10000 perm   2 sec   (4044 perm/sec)   p_kst 2.873000e-01   p_cons 2.503000e-01   p_joint 4.638000e-01

Outputting figure to mutsig2_images.part000000000160/SLC34A1.2_2059_10000_0.2873_0.2503_0.4638.png
                gene_name: SLC34A1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 81 percent done.
SLC35A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.507844e-02	ci left: 4.207667e-01	ci right 4.402738e-01	k: 4305	n:10000
Cons ci ratio: 2.763965e-02	ci left: 6.585713e-01	ci right 6.771308e-01	k: 6679	n:10000
KS ci ratio: 7.235652e-02	ci left: 2.186229e-01	ci right 2.351365e-01	k: 2268	n:10000
SLC35A3   10000 perm   2 sec   (4229 perm/sec)   p_kst 2.268000e-01   p_cons 6.679000e-01   p_joint 4.305000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35A3.2_1006_10000_0.2268_0.6679_0.4305.png
                gene_name: SLC35A3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 83 percent done.
SLC35A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.381275e-02	ci left: 8.832939e-01	ci right 8.956782e-01	k: 8896	n:10000
Cons ci ratio: 2.293342e-02	ci left: 7.363367e-01	ci right 7.535204e-01	k: 7450	n:10000
KS ci ratio: 4.116368e-02	ci left: 4.656703e-01	ci right 4.853440e-01	k: 4755	n:10000
SLC35A4   10000 perm   2 sec   (4857 perm/sec)   p_kst 4.755000e-01   p_cons 7.450000e-01   p_joint 8.896000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35A4.2_979_10000_0.4755_0.745_0.8896.png
                gene_name: SLC35A4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 85 percent done.
SLC35B2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 86 percent done.
SLC35C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.331365e-02	ci left: 7.299703e-01	ci right 7.472905e-01	k: 7387	n:10000
Cons ci ratio: 9.491770e-02	ci left: 1.387411e-01	ci right 1.526660e-01	k: 1456	n:10000
KS ci ratio: 5.098745e-02	ci left: 3.619185e-01	ci right 3.809565e-01	k: 3714	n:10000
SLC35C2   10000 perm   2 sec   (6501 perm/sec)   p_kst 3.714000e-01   p_cons 1.456000e-01   p_joint 7.387000e-01

Outputting figure to mutsig2_images.part000000000160/SLC35C2.2_1134_10000_0.3714_0.1456_0.7387.png
                gene_name: SLC35C2
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 88 percent done.
SLC35D3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.085544e-02	ci left: 6.077911e-01	ci right 6.269405e-01	k: 6174	n:10000
KS ci ratio: 6.820712e-03	ci left: 9.672044e-01	ci right 9.739177e-01	k: 9707	n:10000
SLC35D3   10000 perm   1 sec   (6705 perm/sec)   p_kst 9.707000e-01   p_cons 6.174000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC35D3.2_1259_10000_0.9707_0.6174_1.png
                gene_name: SLC35D3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
SLC35E3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.177040e-02	ci left: 5.938334e-01	ci right 6.131063e-01	k: 6035	n:10000
KS ci ratio: 2.802675e-02	ci left: 6.523307e-01	ci right 6.709750e-01	k: 6617	n:10000
SLC35E3   10000 perm   1 sec   (7089 perm/sec)   p_kst 6.617000e-01   p_cons 6.035000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC35E3.2_962_10000_0.6617_0.6035_1.png
                gene_name: SLC35E3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
SLC35F4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.245653e-02	ci left: 4.502943e-01	ci right 4.699290e-01	k: 4601	n:10000
KS ci ratio: 2.039378e-02	ci left: 7.788424e-01	ci right 7.949902e-01	k: 7870	n:10000
SLC35F4   10000 perm   1 sec   (6673 perm/sec)   p_kst 7.870000e-01   p_cons 4.601000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC35F4.2_1598_10000_0.787_0.4601_1.png
                gene_name: SLC35F4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
SLC36A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.387610e-03	ci left: 9.521083e-01	ci right 9.602233e-01	k: 9563	n:10000
KS ci ratio: 1.748396e-02	ci left: 8.266621e-01	ci right 8.413428e-01	k: 8341	n:10000
SLC36A2   10000 perm   2 sec   (6443 perm/sec)   p_kst 8.341000e-01   p_cons 9.563000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC36A2.2_1492_10000_0.8341_0.9563_1.png
                gene_name: SLC36A2
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
SLC37A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.783297e-02	ci left: 6.554508e-01	ci right 6.740531e-01	k: 6648	n:10000
KS ci ratio: 3.463711e-02	ci left: 5.517079e-01	ci right 5.712563e-01	k: 5615	n:10000
SLC37A1   10000 perm   2 sec   (6340 perm/sec)   p_kst 5.615000e-01   p_cons 6.648000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC37A1.2_1678_10000_0.5615_0.6648_1.png
                gene_name: SLC37A1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
SLC37A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.047050e-02	ci left: 2.279029e-01	ci right 2.446510e-01	k: 2362	n:10000
Cons ci ratio: 1.009590e-01	ci left: 1.243474e-01	ci right 1.376684e-01	k: 1309	n:10000
KS ci ratio: 4.586852e-02	ci left: 4.122941e-01	ci right 4.317514e-01	k: 4220	n:10000
SLC37A4   10000 perm   2 sec   (6476 perm/sec)   p_kst 4.220000e-01   p_cons 1.309000e-01   p_joint 2.362000e-01

Joint ci ratio: 7.348642e-02	ci left: 1.199542e-01	ci right 1.291552e-01	k: 2490	n:20000
Cons ci ratio: 7.044928e-02	ci left: 1.293073e-01	ci right 1.387993e-01	k: 2680	n:20000
KS ci ratio: 3.216908e-02	ci left: 4.191829e-01	ci right 4.329386e-01	k: 8521	n:20000
SLC37A4   20000 perm   3 sec   (5733 perm/sec)   p_kst 4.260500e-01   p_cons 1.340000e-01   p_joint 1.245000e-01

Outputting figure to mutsig2_images.part000000000160/SLC37A4.2_1393_20000_0.42605_0.134_0.1245.png
                gene_name: SLC37A4
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 98 percent done.
SLC38A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.101545e-02	ci left: 4.674681e-01	ci right 4.871451e-01	k: 4773	n:10000
KS ci ratio: 4.338240e-02	ci left: 4.396164e-01	ci right 4.592131e-01	k: 4494	n:10000
SLC38A3   10000 perm   2 sec   (6403 perm/sec)   p_kst 4.494000e-01   p_cons 4.773000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000160/SLC38A3.2_1575_10000_0.4494_0.4773_1.png
                gene_name: SLC38A3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000160
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 160 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 9894139: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000161> was used as the working directory.
Started at Sat Oct  6 00:29:54 2012
Results reported at Sat Oct  6 00:39:36 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000161.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000161.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 161  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000161.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    582.34 sec.
    Max Memory :      3521 MB
    Max Swap   :      5872 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
161
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 161
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 161: processing genes 14425 - 14514
Calculating significance of each gene.
Using projection method.
14425	SLC38A5	6.873386e-01
14426	SLC38A6	2.866651e-01
14427	SLC38A7	7.710540e-01
14428	SLC38A8	7.482670e-01
14429	SLC38A9	5.332299e-01
14430	SLC39A1	1
14431	SLC39A10	4.970209e-01
14432	SLC39A11	4.985148e-01
14433	SLC39A12	6.159511e-01
14434	SLC39A13	1
14435	SLC39A14	6.875865e-01
14436	SLC39A2	3.698448e-02
14437	SLC39A3	1
14438	SLC39A4	9.834958e-01
14439	SLC39A5	3.557430e-01
14440	SLC39A6	7.958506e-01
14441	SLC39A7	1.973727e-01
14442	SLC39A8	7.519575e-01
14443	SLC39A9	5.353898e-01
14444	SLC3A1	2.852399e-01
14445	SLC3A2	8.447631e-01
14446	SLC40A1	9.220988e-01
14447	SLC41A1	9.580993e-01
14448	SLC41A2	7.113129e-01
14449	SLC41A3	2.699896e-02
14450	SLC43A1	5.158379e-01
14451	SLC43A2	5.814968e-01
14452	SLC43A3	3.038004e-01
14453	SLC44A1	1.559391e-01
14454	SLC44A2	3.664705e-01
14455	SLC44A3	2.045301e-01
14456	SLC44A4	4.548939e-01
14457	SLC44A5	6.175726e-04
14458	SLC45A1	9.972400e-01
In gene SLC45A2 the following bins exceed PROBCAP:
    READ-AG-3584	categ 6	N = 1636    n = 1	mu =   1.72e-07
14459	SLC45A2	2.010011e-02
14460	SLC45A3	8.994303e-01
14461	SLC45A4	5.153530e-01
14462	SLC46A1	1
14463	SLC46A2	9.206407e-01
14464	SLC46A3	1.079784e-01
14465	SLC47A1	6.846192e-01
14466	SLC47A2	7.763874e-01
14467	SLC4A1	2.305729e-01
14468	SLC4A10	7.249010e-01
14469	SLC4A11	9.556488e-01
14470	SLC4A1AP	7.425200e-01
14471	SLC4A2	1
14472	SLC4A3	5.732545e-01
14473	SLC4A4	2.638401e-01
14474	SLC4A5	1.404145e-01
14475	SLC4A7	1.889345e-01
14476	SLC4A8	3.215107e-01
14477	SLC4A9	3.342094e-01
14478	SLC5A1	9.374229e-01
14479	SLC5A10	8.165162e-01
14480	SLC5A11	6.502051e-01
14481	SLC5A12	2.111604e-01
14482	SLC5A2	5.515004e-01
14483	SLC5A3	6.624018e-01
14484	SLC5A4	2.066219e-01
14485	SLC5A5	2.735232e-01
14486	SLC5A6	8.680744e-01
14487	SLC5A7	5.541461e-01
14488	SLC5A8	3.997433e-01
14489	SLC5A9	7.646864e-01
14490	SLC6A1	1.818999e-01
14491	SLC6A11	6.920744e-02
14492	SLC6A12	6.809783e-01
14493	SLC6A13	8.819848e-02
14494	SLC6A14	3.218525e-01
14495	SLC6A15	1.162660e-03
14496	SLC6A16	5.528378e-01
14497	SLC6A17	3.068962e-01
14498	SLC6A18	8.379010e-01
14499	SLC6A19	1
14500	SLC6A2	5.469399e-01
14501	SLC6A20	6.993901e-01
14502	SLC6A3	7.621360e-01
14503	SLC6A4	5.886140e-01
14504	SLC6A5	5.261437e-02
14505	SLC6A6	8.687086e-01
14506	SLC6A7	8.406635e-01
14507	SLC6A8	7.685455e-01
14508	SLC6A9	4.620123e-01
14509	SLC7A1	8.357086e-01
14510	SLC7A10	5.555750e-01
14511	SLC7A11	2.290754e-01
14512	SLC7A13	3.418213e-01
14513	SLC7A14	3.439708e-01
14514	SLC7A2	5.102312e-01
Done

Running MutSig 2:
Scatter job 161: processing genes 14425 - 14514
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SLC6A15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.029523e-02	ci left: 2.287917e-01	ci right 2.455617e-01	k: 2371	n:10000
Cons ci ratio: 4.780142e-02	ci left: 3.923700e-01	ci right 4.116871e-01	k: 4020	n:10000
KS ci ratio: 9.607845e-02	ci left: 1.358015e-01	ci right 1.496073e-01	k: 1426	n:10000
SLC6A15   10000 perm   2 sec   (4431 perm/sec)   p_kst 1.426000e-01   p_cons 4.020000e-01   p_joint 2.371000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A15.13_2351_10000_0.1426_0.402_0.2371.png
                gene_name: SLC6A15
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 1 percent done.
SLC44A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.726880e-02	ci left: 3.977478e-01	ci right 4.171061e-01	k: 4074	n:10000
Cons ci ratio: 1.594303e-02	ci left: 8.511065e-01	ci right 8.648842e-01	k: 8581	n:10000
KS ci ratio: 6.807679e-02	ci left: 2.404497e-01	ci right 2.574968e-01	k: 2489	n:10000
SLC44A5   10000 perm   2 sec   (5279 perm/sec)   p_kst 2.489000e-01   p_cons 8.581000e-01   p_joint 4.074000e-01

Outputting figure to mutsig2_images.part000000000161/SLC44A5.11_2363_10000_0.2489_0.8581_0.4074.png
                gene_name: SLC44A5
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 3 percent done.
SLC4A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.213559e-02	ci left: 9.068938e-01	ci right 9.180646e-01	k: 9126	n:10000
Cons ci ratio: 3.892077e-02	ci left: 4.936506e-01	ci right 5.133474e-01	k: 5035	n:10000
KS ci ratio: 3.138021e-02	ci left: 5.997569e-01	ci right 6.189793e-01	k: 6094	n:10000
SLC4A7   10000 perm   2 sec   (4403 perm/sec)   p_kst 6.094000e-01   p_cons 5.035000e-01   p_joint 9.126000e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A7.11_3745_10000_0.6094_0.5035_0.9126.png
                gene_name: SLC4A7
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 4 percent done.
SLC4A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.647308e-02	ci left: 1.348219e-01	ci right 1.485876e-01	k: 1416	n:10000
Cons ci ratio: 2.373042e-02	ci left: 7.230002e-01	ci right 7.404646e-01	k: 7318	n:10000
KS ci ratio: 1.690887e-01	ci left: 4.667345e-02	ci right 5.539046e-02	k: 509	n:10000
SLC4A5   10000 perm   2 sec   (4654 perm/sec)   p_kst 5.090000e-02   p_cons 7.318000e-01   p_joint 1.416000e-01

Joint ci ratio: 6.228641e-02	ci left: 1.601266e-01	ci right 1.704709e-01	k: 3305	n:20000
Cons ci ratio: 1.681654e-02	ci left: 7.247457e-01	ci right 7.370871e-01	k: 14619	n:20000
KS ci ratio: 1.185896e-01	ci left: 4.872026e-02	ci right 5.491086e-02	k: 1035	n:20000
SLC4A5   20000 perm   5 sec   (4183 perm/sec)   p_kst 5.175000e-02   p_cons 7.309500e-01   p_joint 1.652500e-01

Joint ci ratio: 6.060072e-02	ci left: 1.186784e-01	ci right 1.261282e-01	k: 3671	n:30000
Cons ci ratio: 1.373130e-02	ci left: 7.258762e-01	ci right 7.359457e-01	k: 21928	n:30000
KS ci ratio: 9.598481e-02	ci left: 5.013325e-02	ci right 5.522049e-02	k: 1579	n:30000
SLC4A5   30000 perm   8 sec   (3924 perm/sec)   p_kst 5.263333e-02   p_cons 7.309333e-01   p_joint 1.223667e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A5.10_3518_30000_0.052633_0.73093_0.12237.png
                gene_name: SLC4A5
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 6 percent done.
SLC6A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.516803e-02	ci left: 3.261455e-01	ci right 3.447505e-01	k: 3354	n:10000
Cons ci ratio: 7.934133e-02	ci left: 1.883574e-01	ci right 2.040200e-01	k: 1961	n:10000
KS ci ratio: 4.142033e-02	ci left: 4.625744e-01	ci right 4.822417e-01	k: 4724	n:10000
SLC6A5   10000 perm   2 sec   (4762 perm/sec)   p_kst 4.724000e-01   p_cons 1.961000e-01   p_joint 3.354000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A5.9_2458_10000_0.4724_0.1961_0.3354.png
                gene_name: SLC6A5
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 7 percent done.
SLC4A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.810527e-02	ci left: 1.932819e-01	ci right 2.090925e-01	k: 2011	n:10000
Cons ci ratio: 1.157396e-01	ci left: 9.691393e-02	ci right 1.089185e-01	k: 1028	n:10000
KS ci ratio: 4.564363e-02	ci left: 4.146860e-01	ci right 4.341580e-01	k: 4244	n:10000
SLC4A3   10000 perm   2 sec   (4296 perm/sec)   p_kst 4.244000e-01   p_cons 1.028000e-01   p_joint 2.011000e-01

Joint ci ratio: 4.546763e-02	ci left: 2.647494e-01	ci right 2.771173e-01	k: 5418	n:20000
Cons ci ratio: 8.103225e-02	ci left: 1.004895e-01	ci right 1.090258e-01	k: 2094	n:20000
KS ci ratio: 3.177432e-02	ci left: 4.252200e-01	ci right 4.389998e-01	k: 8642	n:20000
SLC4A3   20000 perm   5 sec   (3952 perm/sec)   p_kst 4.321000e-01   p_cons 1.047000e-01   p_joint 2.709000e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A3.8_3868_20000_0.4321_0.1047_0.2709.png
                gene_name: SLC4A3
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 8 percent done.
SLC4A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.575492e-02	ci left: 5.359792e-01	ci right 5.555941e-01	k: 5458	n:10000
KS ci ratio: 1.101379e-02	ci left: 9.216228e-01	ci right 9.319269e-01	k: 9269	n:10000
SLC4A4   10000 perm   2 sec   (4916 perm/sec)   p_kst 9.269000e-01   p_cons 5.458000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC4A4.8_3603_10000_0.9269_0.5458_1.png
                gene_name: SLC4A4
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
SLC4A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.438752e-02	ci left: 1.401132e-01	ci right 1.540931e-01	k: 1470	n:10000
Cons ci ratio: 6.703721e-02	ci left: 2.461830e-01	ci right 2.633601e-01	k: 2547	n:10000
KS ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
SLC4A8   10000 perm   2 sec   (4808 perm/sec)   p_kst 7.950000e-02   p_cons 2.547000e-01   p_joint 1.470000e-01

Joint ci ratio: 7.965873e-02	ci left: 1.036815e-01	ci right 1.123328e-01	k: 2159	n:20000
Cons ci ratio: 4.734051e-02	ci left: 2.492184e-01	ci right 2.613529e-01	k: 5105	n:20000
KS ci ratio: 9.007588e-02	ci left: 8.259055e-02	ci right 9.043015e-02	k: 1729	n:20000
SLC4A8   20000 perm   5 sec   (4407 perm/sec)   p_kst 8.645000e-02   p_cons 2.552500e-01   p_joint 1.079500e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A8.7_3436_20000_0.08645_0.25525_0.10795.png
                gene_name: SLC4A8
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 11 percent done.
SLC5A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.977048e-02	ci left: 4.828546e-01	ci right 5.025497e-01	k: 4927	n:10000
Cons ci ratio: 1.350161e-02	ci left: 8.878013e-01	ci right 8.999681e-01	k: 8940	n:10000
KS ci ratio: 5.851007e-02	ci left: 3.006442e-01	ci right 3.188667e-01	k: 3097	n:10000
SLC5A8   10000 perm   2 sec   (5197 perm/sec)   p_kst 3.097000e-01   p_cons 8.940000e-01   p_joint 4.927000e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A8.7_1893_10000_0.3097_0.894_0.4927.png
                gene_name: SLC5A8
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 13 percent done.
SLC6A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.004989e-02	ci left: 4.793568e-01	ci right 4.990495e-01	k: 4892	n:10000
Cons ci ratio: 4.825167e-02	ci left: 3.878893e-01	ci right 4.071704e-01	k: 3975	n:10000
KS ci ratio: 4.685049e-02	ci left: 4.020311e-01	ci right 4.214204e-01	k: 4117	n:10000
SLC6A11   10000 perm   2 sec   (4813 perm/sec)   p_kst 4.117000e-01   p_cons 3.975000e-01   p_joint 4.892000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A11.7_1955_10000_0.4117_0.3975_0.4892.png
                gene_name: SLC6A11
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 14 percent done.
SLC41A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.298081e-02	ci left: 2.156624e-01	ci right 2.320987e-01	k: 2238	n:10000
Cons ci ratio: 9.334826e-02	ci left: 1.428581e-01	ci right 1.569465e-01	k: 1498	n:10000
KS ci ratio: 6.430867e-02	ci left: 2.621082e-01	ci right 2.796255e-01	k: 2708	n:10000
SLC41A3   10000 perm   2 sec   (5943 perm/sec)   p_kst 2.708000e-01   p_cons 1.498000e-01   p_joint 2.238000e-01

Outputting figure to mutsig2_images.part000000000161/SLC41A3.6_1865_10000_0.2708_0.1498_0.2238.png
                gene_name: SLC41A3
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 15 percent done.
SLC44A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.483523e-02	ci left: 2.071791e-01	ci right 2.233870e-01	k: 2152	n:10000
Cons ci ratio: 1.318562e-01	ci left: 7.582209e-02	ci right 8.662335e-02	k: 811	n:10000
KS ci ratio: 5.053201e-02	ci left: 3.660957e-01	ci right 3.851768e-01	k: 3756	n:10000
SLC44A1   10000 perm   2 sec   (5137 perm/sec)   p_kst 3.756000e-01   p_cons 8.110000e-02   p_joint 2.152000e-01

Joint ci ratio: 6.299545e-02	ci left: 1.570661e-01	ci right 1.673323e-01	k: 3243	n:20000
Cons ci ratio: 9.467332e-02	ci left: 7.520025e-02	ci right 8.272270e-02	k: 1578	n:20000
KS ci ratio: 3.542485e-02	ci left: 3.729669e-01	ci right 3.864681e-01	k: 7594	n:20000
SLC44A1   20000 perm   4 sec   (4646 perm/sec)   p_kst 3.797000e-01   p_cons 7.890000e-02   p_joint 1.621500e-01

Outputting figure to mutsig2_images.part000000000161/SLC44A1.6_2038_20000_0.3797_0.0789_0.16215.png
                gene_name: SLC44A1
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 17 percent done.
SLC44A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.128764e-02	ci left: 4.641722e-01	ci right 4.838429e-01	k: 4740	n:10000
Cons ci ratio: 6.411390e-02	ci left: 2.632958e-01	ci right 2.808372e-01	k: 2720	n:10000
KS ci ratio: 4.157851e-02	ci left: 4.606770e-01	ci right 4.803401e-01	k: 4705	n:10000
SLC44A3   10000 perm   2 sec   (5090 perm/sec)   p_kst 4.705000e-01   p_cons 2.720000e-01   p_joint 4.740000e-01

Outputting figure to mutsig2_images.part000000000161/SLC44A3.6_2022_10000_0.4705_0.272_0.474.png
                gene_name: SLC44A3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 18 percent done.
SLC45A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.265710e-02	ci left: 2.724030e-01	ci right 2.901245e-01	k: 2812	n:10000
Cons ci ratio: 1.358092e-01	ci left: 7.165494e-02	ci right 8.219310e-02	k: 768	n:10000
KS ci ratio: 4.804081e-02	ci left: 3.899802e-01	ci right 4.092783e-01	k: 3996	n:10000
SLC45A2   10000 perm   2 sec   (4578 perm/sec)   p_kst 3.996000e-01   p_cons 7.680000e-02   p_joint 2.812000e-01

Joint ci ratio: 6.246759e-02	ci left: 1.593367e-01	ci right 1.696610e-01	k: 3289	n:20000
Cons ci ratio: 9.431710e-02	ci left: 7.573829e-02	ci right 8.328449e-02	k: 1589	n:20000
KS ci ratio: 3.397678e-02	ci left: 3.927518e-01	ci right 4.063774e-01	k: 7991	n:20000
SLC45A2   20000 perm   5 sec   (4348 perm/sec)   p_kst 3.995500e-01   p_cons 7.945000e-02   p_joint 1.644500e-01

Outputting figure to mutsig2_images.part000000000161/SLC45A2.6_1636_20000_0.39955_0.07945_0.16445.png
                gene_name: SLC45A2
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 20 percent done.
SLC4A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.816980e-02	ci left: 3.031235e-01	ci right 3.213860e-01	k: 3122	n:10000
Cons ci ratio: 7.439508e-02	ci left: 2.091515e-01	ci right 2.254135e-01	k: 2172	n:10000
KS ci ratio: 6.453735e-02	ci left: 2.607228e-01	ci right 2.782117e-01	k: 2694	n:10000
SLC4A1   10000 perm   2 sec   (5080 perm/sec)   p_kst 2.694000e-01   p_cons 2.172000e-01   p_joint 3.122000e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A1.6_2812_10000_0.2694_0.2172_0.3122.png
                gene_name: SLC4A1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 21 percent done.
SLC4A1AP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.739590e-02	ci left: 1.325692e-01	ci right 1.462416e-01	k: 1393	n:10000
Cons ci ratio: 5.902015e-02	ci left: 2.969755e-01	ci right 3.151376e-01	k: 3060	n:10000
KS ci ratio: 1.809983e-01	ci left: 4.073298e-02	ci right 4.893483e-02	k: 447	n:10000
SLC4A1AP   10000 perm   2 sec   (5256 perm/sec)   p_kst 4.470000e-02   p_cons 3.060000e-01   p_joint 1.393000e-01

Joint ci ratio: 8.835364e-02	ci left: 8.562761e-02	ci right 9.359217e-02	k: 1791	n:20000
Cons ci ratio: 4.130535e-02	ci left: 3.040407e-01	ci right 3.169145e-01	k: 6209	n:20000
KS ci ratio: 1.350006e-01	ci left: 3.771321e-02	ci right 4.322141e-02	k: 808	n:20000
SLC4A1AP   20000 perm   4 sec   (4700 perm/sec)   p_kst 4.040000e-02   p_cons 3.104500e-01   p_joint 8.955000e-02

Joint ci ratio: 9.411313e-02	ci left: 5.208821e-02	ci right 5.726512e-02	k: 1639	n:30000
Cons ci ratio: 3.432571e-02	ci left: 2.977692e-01	ci right 3.082023e-01	k: 9089	n:30000
KS ci ratio: 1.108726e-01	ci left: 3.777809e-02	ci right 4.224489e-02	k: 1199	n:30000
SLC4A1AP   30000 perm   7 sec   (4523 perm/sec)   p_kst 3.996667e-02   p_cons 3.029667e-01   p_joint 5.463333e-02

Joint ci ratio: 6.219061e-02	ci left: 8.753322e-02	ci right 9.317641e-02	k: 3613	n:40000
Cons ci ratio: 2.887307e-02	ci left: 3.108722e-01	ci right 3.200046e-01	k: 12617	n:40000
KS ci ratio: 9.392864e-02	ci left: 3.976182e-02	ci right 4.370506e-02	k: 1668	n:40000
SLC4A1AP   40000 perm   9 sec   (4396 perm/sec)   p_kst 4.170000e-02   p_cons 3.154250e-01   p_joint 9.032500e-02

Outputting figure to mutsig2_images.part000000000161/SLC4A1AP.6_2447_40000_0.0417_0.31543_0.090325.png
                gene_name: SLC4A1AP
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.093 

Current progress: 23 percent done.
SLC6A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.076007e-02	ci left: 9.248228e-01	ci right 9.349250e-01	k: 9300	n:10000
KS ci ratio: 1.011016e-02	ci left: 9.327839e-01	ci right 9.423592e-01	k: 9377	n:10000
SLC6A1   10000 perm   2 sec   (5569 perm/sec)   p_kst 9.377000e-01   p_cons 9.300000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC6A1.6_1856_10000_0.9377_0.93_1.png
                gene_name: SLC6A1
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 24 percent done.
SLC6A13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.394607e-02	ci left: 5.616310e-01	ci right 5.811274e-01	k: 5714	n:10000
Cons ci ratio: 7.393882e-02	ci left: 2.112229e-01	ci right 2.275409e-01	k: 2193	n:10000
KS ci ratio: 3.264705e-02	ci left: 5.806865e-01	ci right 6.000608e-01	k: 5904	n:10000
SLC6A13   10000 perm   2 sec   (5519 perm/sec)   p_kst 5.904000e-01   p_cons 2.193000e-01   p_joint 5.714000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A13.6_1865_10000_0.5904_0.2193_0.5714.png
                gene_name: SLC6A13
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 25 percent done.
SLC44A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.247168e-02	ci left: 2.735913e-01	ci right 2.913356e-01	k: 2824	n:10000
Cons ci ratio: 1.293953e-02	ci left: 8.957999e-01	ci right 9.075649e-01	k: 9018	n:10000
KS ci ratio: 1.103187e-01	ci left: 1.058826e-01	ci right 1.183444e-01	k: 1120	n:10000
SLC44A2   10000 perm   2 sec   (5389 perm/sec)   p_kst 1.120000e-01   p_cons 9.018000e-01   p_joint 2.824000e-01

Joint ci ratio: 5.931176e-02	ci left: 1.739067e-01	ci right 1.845867e-01	k: 3584	n:20000
Cons ci ratio: 8.614479e-03	ci left: 9.079377e-01	ci right 9.158421e-01	k: 18239	n:20000
KS ci ratio: 7.972081e-02	ci left: 1.035342e-01	ci right 1.121802e-01	k: 2156	n:20000
SLC44A2   20000 perm   4 sec   (4856 perm/sec)   p_kst 1.078000e-01   p_cons 9.119500e-01   p_joint 1.792000e-01

Outputting figure to mutsig2_images.part000000000161/SLC44A2.5_2244_20000_0.1078_0.91195_0.1792.png
                gene_name: SLC44A2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 27 percent done.
SLC45A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.317620e-02	ci left: 5.728619e-01	ci right 5.922899e-01	k: 5826	n:10000
Cons ci ratio: 8.061926e-03	ci left: 9.554502e-01	ci right 9.632793e-01	k: 9595	n:10000
KS ci ratio: 4.085144e-02	ci left: 4.694658e-01	ci right 4.891463e-01	k: 4793	n:10000
SLC45A4   10000 perm   2 sec   (5104 perm/sec)   p_kst 4.793000e-01   p_cons 9.595000e-01   p_joint 5.826000e-01

Outputting figure to mutsig2_images.part000000000161/SLC45A4.5_2429_10000_0.4793_0.9595_0.5826.png
                gene_name: SLC45A4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 28 percent done.
SLC46A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.486677e-01	ci left: 6.014890e-02	ci right 6.990637e-02	k: 649	n:10000
Cons ci ratio: 1.156770e-01	ci left: 9.701134e-02	ci right 1.090210e-01	k: 1029	n:10000
KS ci ratio: 8.435169e-02	ci left: 1.700559e-01	ci right 1.851324e-01	k: 1775	n:10000
SLC46A3   10000 perm   2 sec   (5383 perm/sec)   p_kst 1.775000e-01   p_cons 1.029000e-01   p_joint 6.490000e-02

Joint ci ratio: 8.276387e-02	ci left: 9.666079e-02	ci right 1.050557e-01	k: 2016	n:20000
Cons ci ratio: 8.197512e-02	ci left: 9.837857e-02	ci right 1.068374e-01	k: 2051	n:20000
KS ci ratio: 5.956496e-02	ci left: 1.726714e-01	ci right 1.833224e-01	k: 3559	n:20000
SLC46A3   20000 perm   4 sec   (4618 perm/sec)   p_kst 1.779500e-01   p_cons 1.025500e-01   p_joint 1.008000e-01

Outputting figure to mutsig2_images.part000000000161/SLC46A3.5_1420_20000_0.17795_0.10255_0.1008.png
                gene_name: SLC46A3
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.11 

Current progress: 30 percent done.
SLC4A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.027723e-01	ci left: 1.204354e-01	ci right 1.335827e-01	k: 1269	n:10000
Cons ci ratio: 1.091704e-01	ci left: 1.079317e-01	ci right 1.204941e-01	k: 1141	n:10000
KS ci ratio: 1.140181e-01	ci left: 9.964203e-02	ci right 1.117887e-01	k: 1056	n:10000
SLC4A10   10000 perm   2 sec   (5165 perm/sec)   p_kst 1.056000e-01   p_cons 1.141000e-01   p_joint 1.269000e-01

Joint ci ratio: 8.045436e-02	ci left: 1.018153e-01	ci right 1.103996e-01	k: 2121	n:20000
Cons ci ratio: 7.870210e-02	ci left: 1.059903e-01	ci right 1.147233e-01	k: 2206	n:20000
KS ci ratio: 8.184185e-02	ci left: 9.867308e-02	ci right 1.071428e-01	k: 2057	n:20000
SLC4A10   20000 perm   4 sec   (4673 perm/sec)   p_kst 1.028500e-01   p_cons 1.103000e-01   p_joint 1.060500e-01

Outputting figure to mutsig2_images.part000000000161/SLC4A10.5_3546_20000_0.10285_0.1103_0.10605.png
                gene_name: SLC4A10
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 31 percent done.
SLC5A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.504835e-02	ci left: 8.648849e-01	ci right 8.780979e-01	k: 8716	n:10000
Cons ci ratio: 1.275626e-02	ci left: 8.983659e-01	ci right 9.099975e-01	k: 9043	n:10000
KS ci ratio: 2.167809e-02	ci left: 7.573729e-01	ci right 7.740721e-01	k: 7658	n:10000
SLC5A12   10000 perm   2 sec   (4957 perm/sec)   p_kst 7.658000e-01   p_cons 9.043000e-01   p_joint 8.716000e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A12.5_1917_10000_0.7658_0.9043_0.8716.png
                gene_name: SLC5A12
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 32 percent done.
SLC7A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.748407e-02	ci left: 6.610882e-01	ci right 6.796124e-01	k: 6704	n:10000
KS ci ratio: 1.550197e-02	ci left: 8.579419e-01	ci right 8.714449e-01	k: 8648	n:10000
SLC7A14   10000 perm   2 sec   (5659 perm/sec)   p_kst 8.648000e-01   p_cons 6.704000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC7A14.5_2344_10000_0.8648_0.6704_1.png
                gene_name: SLC7A14
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
SLC38A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.811184e-02	ci left: 5.041511e-01	ci right 5.238407e-01	k: 5140	n:10000
Cons ci ratio: 4.675392e-02	ci left: 4.030273e-01	ci right 4.224236e-01	k: 4127	n:10000
KS ci ratio: 4.227754e-02	ci left: 4.523904e-01	ci right 4.720316e-01	k: 4622	n:10000
SLC38A6   10000 perm   2 sec   (5658 perm/sec)   p_kst 4.622000e-01   p_cons 4.127000e-01   p_joint 5.140000e-01

Outputting figure to mutsig2_images.part000000000161/SLC38A6.4_1719_10000_0.4622_0.4127_0.514.png
                gene_name: SLC38A6
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 35 percent done.
SLC39A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.715515e-02	ci left: 6.664250e-01	ci right 6.848726e-01	k: 6757	n:10000
Cons ci ratio: 7.905421e-03	ci left: 9.570190e-01	ci right 9.647096e-01	k: 9610	n:10000
KS ci ratio: 5.094380e-02	ci left: 3.623163e-01	ci right 3.813585e-01	k: 3718	n:10000
SLC39A10   10000 perm   2 sec   (5202 perm/sec)   p_kst 3.718000e-01   p_cons 9.610000e-01   p_joint 6.757000e-01

Outputting figure to mutsig2_images.part000000000161/SLC39A10.4_2532_10000_0.3718_0.961_0.6757.png
                gene_name: SLC39A10
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 37 percent done.
SLC39A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.868041e-02	ci left: 6.418666e-01	ci right 6.606452e-01	k: 6513	n:10000
Cons ci ratio: 1.047675e-02	ci left: 9.283358e-01	ci right 9.382100e-01	k: 9334	n:10000
KS ci ratio: 4.205714e-02	ci left: 4.549859e-01	ci right 4.746346e-01	k: 4648	n:10000
SLC39A12   10000 perm   2 sec   (5480 perm/sec)   p_kst 4.648000e-01   p_cons 9.334000e-01   p_joint 6.513000e-01

Outputting figure to mutsig2_images.part000000000161/SLC39A12.4_2124_10000_0.4648_0.9334_0.6513.png
                gene_name: SLC39A12
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 38 percent done.
SLC39A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.394806e-02	ci left: 7.193647e-01	ci right 7.369022e-01	k: 7282	n:10000
Cons ci ratio: 1.162697e-02	ci left: 9.136856e-01	ci right 9.244688e-01	k: 9192	n:10000
KS ci ratio: 3.446164e-02	ci left: 5.542133e-01	ci right 5.737494e-01	k: 5640	n:10000
SLC39A2   10000 perm   2 sec   (5527 perm/sec)   p_kst 5.640000e-01   p_cons 9.192000e-01   p_joint 7.282000e-01

Outputting figure to mutsig2_images.part000000000161/SLC39A2.4_946_10000_0.564_0.9192_0.7282.png
                gene_name: SLC39A2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 39 percent done.
SLC39A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.564270e-02	ci left: 6.912135e-01	ci right 7.092697e-01	k: 7003	n:10000
Cons ci ratio: 4.047690e-02	ci left: 4.740612e-01	ci right 4.937482e-01	k: 4839	n:10000
KS ci ratio: 3.612419e-02	ci left: 5.308720e-01	ci right 5.505042e-01	k: 5407	n:10000
SLC39A5   10000 perm   2 sec   (6078 perm/sec)   p_kst 5.407000e-01   p_cons 4.839000e-01   p_joint 7.003000e-01

Outputting figure to mutsig2_images.part000000000161/SLC39A5.4_1663_10000_0.5407_0.4839_0.7003.png
                gene_name: SLC39A5
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 41 percent done.
SLC39A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.307051e-02	ci left: 8.939531e-01	ci right 9.058128e-01	k: 9000	n:10000
Cons ci ratio: 1.628821e-02	ci left: 8.457031e-01	ci right 8.596908e-01	k: 8528	n:10000
KS ci ratio: 3.129460e-02	ci left: 6.010623e-01	ci right 6.202732e-01	k: 6107	n:10000
SLC39A7   10000 perm   2 sec   (5575 perm/sec)   p_kst 6.107000e-01   p_cons 8.528000e-01   p_joint 9.000000e-01

Outputting figure to mutsig2_images.part000000000161/SLC39A7.4_1438_10000_0.6107_0.8528_0.9.png
                gene_name: SLC39A7
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 42 percent done.
SLC3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.285258e-01	ci left: 7.960546e-02	ci right 9.063764e-02	k: 850	n:10000
Cons ci ratio: 5.128351e-02	ci left: 3.592335e-01	ci right 3.782430e-01	k: 3687	n:10000
KS ci ratio: 3.045107e-01	ci left: 1.381734e-02	ci right 1.887010e-02	k: 162	n:10000
SLC3A1   10000 perm   2 sec   (5387 perm/sec)   p_kst 1.620000e-02   p_cons 3.687000e-01   p_joint 8.500000e-02

Joint ci ratio: 1.282881e-01	ci left: 4.173208e-02	ci right 4.750125e-02	k: 891	n:20000
Cons ci ratio: 3.640337e-02	ci left: 3.602651e-01	ci right 3.736736e-01	k: 7339	n:20000
KS ci ratio: 2.098322e-01	ci left: 1.534872e-02	ci right 1.899360e-02	k: 342	n:20000
SLC3A1   20000 perm   4 sec   (4839 perm/sec)   p_kst 1.710000e-02   p_cons 3.669500e-01   p_joint 4.455000e-02

Joint ci ratio: 9.742521e-02	ci left: 4.870025e-02	ci right 5.372045e-02	k: 1535	n:30000
Cons ci ratio: 2.960414e-02	ci left: 3.633698e-01	ci right 3.743223e-01	k: 11065	n:30000
KS ci ratio: 1.733099e-01	ci left: 1.531212e-02	ci right 1.824920e-02	k: 502	n:30000
SLC3A1   30000 perm   6 sec   (4652 perm/sec)   p_kst 1.673333e-02   p_cons 3.688333e-01   p_joint 5.116667e-02

Joint ci ratio: 7.512737e-02	ci left: 6.132595e-02	ci right 6.613763e-02	k: 2548	n:40000
Cons ci ratio: 2.555919e-02	ci left: 3.655399e-01	ci right 3.750289e-01	k: 14811	n:40000
KS ci ratio: 1.517883e-01	ci left: 1.515398e-02	ci right 1.766693e-02	k: 655	n:40000
SLC3A1   40000 perm   9 sec   (4394 perm/sec)   p_kst 1.637500e-02   p_cons 3.702750e-01   p_joint 6.370000e-02

Joint ci ratio: 7.756407e-02	ci left: 4.671183e-02	ci right 5.050080e-02	k: 2429	n:50000
Cons ci ratio: 2.284514e-02	ci left: 3.663643e-01	ci right 3.748507e-01	k: 18530	n:50000
KS ci ratio: 1.335458e-01	ci left: 1.580765e-02	ci right 1.808893e-02	k: 846	n:50000
SLC3A1   50000 perm   12 sec   (4285 perm/sec)   p_kst 1.692000e-02   p_cons 3.706000e-01   p_joint 4.858000e-02

Joint ci ratio: 6.487074e-02	ci left: 5.550268e-02	ci right 5.924028e-02	k: 3441	n:60000
Cons ci ratio: 2.043006e-02	ci left: 3.763632e-01	ci right 3.841484e-01	k: 22815	n:60000
KS ci ratio: 1.239992e-01	ci left: 1.536654e-02	ci right 1.741396e-02	k: 982	n:60000
SLC3A1   60000 perm   14 sec   (4210 perm/sec)   p_kst 1.636667e-02   p_cons 3.802500e-01   p_joint 5.735000e-02

Joint ci ratio: 6.560446e-02	ci left: 4.693428e-02	ci right 5.013185e-02	k: 3396	n:70000
Cons ci ratio: 1.894421e-02	ci left: 3.759174e-01	ci right 3.831212e-01	k: 26566	n:70000
KS ci ratio: 1.155114e-01	ci left: 1.524998e-02	ci right 1.713329e-02	k: 1132	n:70000
SLC3A1   70000 perm   17 sec   (4152 perm/sec)   p_kst 1.617143e-02   p_cons 3.795143e-01   p_joint 4.851429e-02

Joint ci ratio: 5.673491e-02	ci left: 5.471261e-02	ci right 5.791966e-02	k: 4504	n:80000
Cons ci ratio: 1.774388e-02	ci left: 3.755366e-01	ci right 3.822722e-01	k: 30312	n:80000
KS ci ratio: 1.082576e-01	ci left: 1.525135e-02	ci right 1.700900e-02	k: 1289	n:80000
SLC3A1   80000 perm   20 sec   (4094 perm/sec)   p_kst 1.611250e-02   p_cons 3.789000e-01   p_joint 5.630000e-02

Joint ci ratio: 5.839782e-02	ci left: 4.628374e-02	ci right 4.907884e-02	k: 4290	n:90000
Cons ci ratio: 1.675998e-02	ci left: 3.748638e-01	ci right 3.812107e-01	k: 34023	n:90000
KS ci ratio: 1.023264e-01	ci left: 1.522281e-02	ci right 1.687526e-02	k: 1443	n:90000
SLC3A1   90000 perm   22 sec   (4032 perm/sec)   p_kst 1.603333e-02   p_cons 3.780333e-01   p_joint 4.766667e-02

Joint ci ratio: 5.182309e-02	ci left: 5.271576e-02	ci right 5.553018e-02	k: 5411	n:100000
Cons ci ratio: 1.590176e-02	ci left: 3.749733e-01	ci right 3.809938e-01	k: 37798	n:100000
KS ci ratio: 9.638915e-02	ci left: 1.548518e-02	ci right 1.706306e-02	k: 1626	n:100000
SLC3A1   100000 perm   25 sec   (3973 perm/sec)   p_kst 1.626000e-02   p_cons 3.779800e-01   p_joint 5.411000e-02

Outputting figure to mutsig2_images.part000000000161/SLC3A1.4_2098_100000_0.01626_0.37798_0.05411.png
                gene_name: SLC3A1
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.054 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.056 

Current progress: 44 percent done.
SLC44A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.480136e-03	ci left: 9.847992e-01	ci right 9.893104e-01	k: 9872	n:10000
KS ci ratio: 2.483278e-02	ci left: 7.046281e-01	ci right 7.224473e-01	k: 7136	n:10000
SLC44A4   10000 perm   2 sec   (5663 perm/sec)   p_kst 7.136000e-01   p_cons 9.872000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC44A4.4_2217_10000_0.7136_0.9872_1.png
                gene_name: SLC44A4
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
SLC47A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.106241e-02	ci left: 9.210038e-01	ci right 9.313463e-01	k: 9263	n:10000
KS ci ratio: 7.767639e-03	ci left: 9.583798e-01	ci right 9.659480e-01	k: 9623	n:10000
SLC47A1   10000 perm   2 sec   (4675 perm/sec)   p_kst 9.623000e-01   p_cons 9.263000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC47A1.4_1781_10000_0.9623_0.9263_1.png
                gene_name: SLC47A1
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
SLC4A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.520918e-02	ci left: 8.624338e-01	ci right 8.757504e-01	k: 8692	n:10000
KS ci ratio: 1.886299e-02	ci left: 8.042017e-01	ci right 8.196161e-01	k: 8120	n:10000
SLC4A9   10000 perm   2 sec   (5045 perm/sec)   p_kst 8.120000e-01   p_cons 8.692000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC4A9.4_2964_10000_0.812_0.8692_1.png
                gene_name: SLC4A9
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
SLC5A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.562533e-02	ci left: 5.377820e-01	ci right 5.573903e-01	k: 5476	n:10000
Cons ci ratio: 2.187136e-02	ci left: 7.541348e-01	ci right 7.709120e-01	k: 7626	n:10000
KS ci ratio: 4.842331e-02	ci left: 3.861969e-01	ci right 4.054639e-01	k: 3958	n:10000
SLC5A2   10000 perm   2 sec   (5595 perm/sec)   p_kst 3.958000e-01   p_cons 7.626000e-01   p_joint 5.476000e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A2.4_2075_10000_0.3958_0.7626_0.5476.png
                gene_name: SLC5A2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 49 percent done.
SLC5A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.328612e-02	ci left: 4.407139e-01	ci right 4.603149e-01	k: 4505	n:10000
Cons ci ratio: 6.320387e-02	ci left: 2.689378e-01	ci right 2.865919e-01	k: 2777	n:10000
KS ci ratio: 4.932590e-02	ci left: 3.774378e-01	ci right 3.966281e-01	k: 3870	n:10000
SLC5A4   10000 perm   2 sec   (5122 perm/sec)   p_kst 3.870000e-01   p_cons 2.777000e-01   p_joint 4.505000e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A4.4_2040_10000_0.387_0.2777_0.4505.png
                gene_name: SLC5A4
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 51 percent done.
SLC5A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.418404e-02	ci left: 7.154271e-01	ci right 7.330421e-01	k: 7243	n:10000
KS ci ratio: 4.793088e-02	ci left: 3.910755e-01	ci right 4.103824e-01	k: 4007	n:10000
SLC5A5   10000 perm   2 sec   (5098 perm/sec)   p_kst 4.007000e-01   p_cons 7.243000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC5A5.4_1992_10000_0.4007_0.7243_1.png
                gene_name: SLC5A5
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
SLC6A17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.961172e-02	ci left: 4.848535e-01	ci right 5.045496e-01	k: 4947	n:10000
Cons ci ratio: 3.217011e-02	ci left: 5.878110e-01	ci right 6.071321e-01	k: 5975	n:10000
KS ci ratio: 6.623483e-02	ci left: 2.507315e-01	ci right 2.680089e-01	k: 2593	n:10000
SLC6A17   10000 perm   2 sec   (5741 perm/sec)   p_kst 2.593000e-01   p_cons 5.975000e-01   p_joint 4.947000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A17.4_2228_10000_0.2593_0.5975_0.4947.png
                gene_name: SLC6A17
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 54 percent done.
SLC6A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.883207e-02	ci left: 6.394525e-01	ci right 6.582607e-01	k: 6489	n:10000
Cons ci ratio: 6.039576e-02	ci left: 2.873607e-01	ci right 3.053581e-01	k: 2963	n:10000
KS ci ratio: 3.309443e-02	ci left: 5.740655e-01	ci right 5.934856e-01	k: 5838	n:10000
SLC6A2   10000 perm   2 sec   (5605 perm/sec)   p_kst 5.838000e-01   p_cons 2.963000e-01   p_joint 6.489000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A2.4_2062_10000_0.5838_0.2963_0.6489.png
                gene_name: SLC6A2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 55 percent done.
SLC6A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.933755e-02	ci left: 2.337305e-01	ci right 2.506200e-01	k: 2421	n:10000
Cons ci ratio: 1.141993e-01	ci left: 9.934967e-02	ci right 1.114813e-01	k: 1053	n:10000
KS ci ratio: 4.646584e-02	ci left: 4.060162e-01	ci right 4.254329e-01	k: 4157	n:10000
SLC6A4   10000 perm   2 sec   (5615 perm/sec)   p_kst 4.157000e-01   p_cons 1.053000e-01   p_joint 2.421000e-01

Joint ci ratio: 5.476134e-02	ci left: 1.983346e-01	ci right 2.095516e-01	k: 4078	n:20000
Cons ci ratio: 8.313105e-02	ci left: 9.587565e-02	ci right 1.042410e-01	k: 2000	n:20000
KS ci ratio: 3.317588e-02	ci left: 4.042194e-01	ci right 4.179065e-01	k: 8221	n:20000
SLC6A4   20000 perm   4 sec   (5044 perm/sec)   p_kst 4.110500e-01   p_cons 1.000000e-01   p_joint 2.039000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A4.4_1945_20000_0.41105_0.1_0.2039.png
                gene_name: SLC6A4
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 56 percent done.
SLC6A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.687980e-02	ci left: 5.205606e-01	ci right 5.402216e-01	k: 5304	n:10000
Cons ci ratio: 4.214176e-02	ci left: 4.539876e-01	ci right 4.736335e-01	k: 4638	n:10000
KS ci ratio: 4.961818e-02	ci left: 3.746515e-01	ci right 3.938160e-01	k: 3842	n:10000
SLC6A9   10000 perm   2 sec   (5614 perm/sec)   p_kst 3.842000e-01   p_cons 4.638000e-01   p_joint 5.304000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A9.4_2211_10000_0.3842_0.4638_0.5304.png
                gene_name: SLC6A9
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 58 percent done.
SLC7A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.659224e-02	ci left: 1.345280e-01	ci right 1.482816e-01	k: 1413	n:10000
Cons ci ratio: 3.842576e-02	ci left: 5.000504e-01	ci right 5.197438e-01	k: 5099	n:10000
KS ci ratio: 1.416829e-01	ci left: 6.604181e-02	ci right 7.620974e-02	k: 710	n:10000
SLC7A2   10000 perm   2 sec   (5389 perm/sec)   p_kst 7.100000e-02   p_cons 5.099000e-01   p_joint 1.413000e-01

Joint ci ratio: 8.525382e-02	ci left: 9.150982e-02	ci right 9.970819e-02	k: 1911	n:20000
Cons ci ratio: 2.721662e-02	ci left: 5.021457e-01	ci right 5.160516e-01	k: 10182	n:20000
KS ci ratio: 9.899308e-02	ci left: 6.909005e-02	ci right 7.633477e-02	k: 1453	n:20000
SLC7A2   20000 perm   4 sec   (4849 perm/sec)   p_kst 7.265000e-02   p_cons 5.091000e-01   p_joint 9.555000e-02

Outputting figure to mutsig2_images.part000000000161/SLC7A2.4_2286_20000_0.07265_0.5091_0.09555.png
                gene_name: SLC7A2
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.073 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.100 

Current progress: 59 percent done.
SLC38A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.640239e-02	ci left: 6.787147e-01	ci right 6.969757e-01	k: 6879	n:10000
Cons ci ratio: 4.334736e-02	ci left: 4.400155e-01	ci right 4.596137e-01	k: 4498	n:10000
KS ci ratio: 2.980685e-02	ci left: 6.240687e-01	ci right 6.430535e-01	k: 6336	n:10000
SLC38A9   10000 perm   2 sec   (5833 perm/sec)   p_kst 6.336000e-01   p_cons 4.498000e-01   p_joint 6.879000e-01

Outputting figure to mutsig2_images.part000000000161/SLC38A9.3_1742_10000_0.6336_0.4498_0.6879.png
                gene_name: SLC38A9
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 61 percent done.
SLC43A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
Cons ci ratio: 9.549380e-02	ci left: 1.372712e-01	ci right 1.511368e-01	k: 1441	n:10000
KS ci ratio: 1.452325e-01	ci left: 6.294902e-02	ci right 7.290448e-02	k: 678	n:10000
SLC43A1   10000 perm   2 sec   (5998 perm/sec)   p_kst 6.780000e-02   p_cons 1.441000e-01   p_joint 4.150000e-02

Joint ci ratio: 1.609604e-01	ci left: 2.647782e-02	ci right 3.116050e-02	k: 575	n:20000
Cons ci ratio: 6.577614e-02	ci left: 1.458172e-01	ci right 1.557846e-01	k: 3015	n:20000
KS ci ratio: 1.023338e-01	ci left: 6.484186e-02	ci right 7.188426e-02	k: 1366	n:20000
SLC43A1   20000 perm   4 sec   (5349 perm/sec)   p_kst 6.830000e-02   p_cons 1.507500e-01   p_joint 2.875000e-02

Joint ci ratio: 1.403785e-01	ci left: 2.355244e-02	ci right 2.714029e-02	k: 759	n:30000
Cons ci ratio: 5.537412e-02	ci left: 1.391555e-01	ci right 1.471137e-01	k: 4293	n:30000
KS ci ratio: 8.463514e-02	ci left: 6.390207e-02	ci right 6.958219e-02	k: 2001	n:30000
SLC43A1   30000 perm   6 sec   (4877 perm/sec)   p_kst 6.670000e-02   p_cons 1.431000e-01   p_joint 2.530000e-02

Joint ci ratio: 8.450356e-02	ci left: 4.888872e-02	ci right 5.322675e-02	k: 2041	n:40000
Cons ci ratio: 4.768531e-02	ci left: 1.410678e-01	ci right 1.479839e-01	k: 5780	n:40000
KS ci ratio: 7.346369e-02	ci left: 6.400365e-02	ci right 6.890952e-02	k: 2657	n:40000
SLC43A1   40000 perm   9 sec   (4392 perm/sec)   p_kst 6.642500e-02   p_cons 1.445000e-01   p_joint 5.102500e-02

Outputting figure to mutsig2_images.part000000000161/SLC43A1.3_1736_40000_0.066425_0.1445_0.051025.png
                gene_name: SLC43A1
               theta_stop: 0.085 
                    nperm: 40000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.053 

Current progress: 62 percent done.
SLC43A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.615064e-02	ci left: 6.828465e-01	ci right 7.010415e-01	k: 6920	n:10000
Cons ci ratio: 4.885111e-02	ci left: 3.820160e-01	ci right 4.012472e-01	k: 3916	n:10000
KS ci ratio: 1.698901e-02	ci left: 8.346000e-01	ci right 8.490003e-01	k: 8419	n:10000
SLC43A3   10000 perm   2 sec   (4169 perm/sec)   p_kst 8.419000e-01   p_cons 3.916000e-01   p_joint 6.920000e-01

Outputting figure to mutsig2_images.part000000000161/SLC43A3.3_1524_10000_0.8419_0.3916_0.692.png
                gene_name: SLC43A3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 63 percent done.
SLC4A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.948433e-02	ci left: 7.939508e-01	ci right 8.096730e-01	k: 8019	n:10000
KS ci ratio: 2.813948e-02	ci left: 6.505193e-01	ci right 6.691875e-01	k: 6599	n:10000
SLC4A11   10000 perm   2 sec   (4918 perm/sec)   p_kst 6.599000e-01   p_cons 8.019000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC4A11.3_2975_10000_0.6599_0.8019_1.png
                gene_name: SLC4A11
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
SLC5A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.788656e-02	ci left: 8.201532e-01	ci right 8.350554e-01	k: 8277	n:10000
KS ci ratio: 1.969253e-02	ci left: 7.905018e-01	ci right 8.063240e-01	k: 7985	n:10000
SLC5A11   10000 perm   2 sec   (5850 perm/sec)   p_kst 7.985000e-01   p_cons 8.277000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC5A11.3_2088_10000_0.7985_0.8277_1.png
                gene_name: SLC5A11
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
SLC5A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.550165e-02	ci left: 2.549845e-01	ci right 2.723533e-01	k: 2636	n:10000
Cons ci ratio: 3.562533e-02	ci left: 5.377820e-01	ci right 5.573903e-01	k: 5476	n:10000
KS ci ratio: 1.438733e-01	ci left: 6.410846e-02	ci right 7.414431e-02	k: 690	n:10000
SLC5A7   10000 perm   2 sec   (4240 perm/sec)   p_kst 6.900000e-02   p_cons 5.476000e-01   p_joint 2.636000e-01

Joint ci ratio: 8.109712e-02	ci left: 1.003422e-01	ci right 1.088731e-01	k: 2091	n:20000
Cons ci ratio: 2.529696e-02	ci left: 5.386181e-01	ci right 5.524687e-01	k: 10911	n:20000
KS ci ratio: 9.954792e-02	ci left: 6.835732e-02	ci right 7.556772e-02	k: 1438	n:20000
SLC5A7   20000 perm   5 sec   (4069 perm/sec)   p_kst 7.190000e-02   p_cons 5.455500e-01   p_joint 1.045500e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A7.3_1775_20000_0.0719_0.54555_0.10455.png
                gene_name: SLC5A7
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 68 percent done.
SLC5A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.204988e-02	ci left: 5.896176e-01	ci right 6.089245e-01	k: 5993	n:10000
Cons ci ratio: 2.199211e-02	ci left: 7.521113e-01	ci right 7.689367e-01	k: 7606	n:10000
KS ci ratio: 4.230306e-02	ci left: 4.520910e-01	ci right 4.717312e-01	k: 4619	n:10000
SLC5A9   10000 perm   2 sec   (5643 perm/sec)   p_kst 4.619000e-01   p_cons 7.606000e-01   p_joint 5.993000e-01

Outputting figure to mutsig2_images.part000000000161/SLC5A9.3_2181_10000_0.4619_0.7606_0.5993.png
                gene_name: SLC5A9
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 69 percent done.
SLC6A12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.869324e-02	ci left: 1.909179e-01	ci right 2.066579e-01	k: 1987	n:10000
Cons ci ratio: 2.758361e-02	ci left: 6.594774e-01	ci right 6.780242e-01	k: 6688	n:10000
KS ci ratio: 1.807872e-01	ci left: 4.082863e-02	ci right 4.903911e-02	k: 448	n:10000
SLC6A12   10000 perm   2 sec   (5394 perm/sec)   p_kst 4.480000e-02   p_cons 6.688000e-01   p_joint 1.987000e-01

Joint ci ratio: 8.047557e-02	ci left: 1.017662e-01	ci right 1.103488e-01	k: 2120	n:20000
Cons ci ratio: 1.945687e-02	ci left: 6.633335e-01	ci right 6.764171e-01	k: 13398	n:20000
KS ci ratio: 1.310813e-01	ci left: 3.998807e-02	ci right 4.564582e-02	k: 855	n:20000
SLC6A12   20000 perm   4 sec   (5029 perm/sec)   p_kst 4.275000e-02   p_cons 6.699000e-01   p_joint 1.060000e-01

Joint ci ratio: 6.296886e-02	ci left: 1.107861e-01	ci right 1.180221e-01	k: 3431	n:30000
Cons ci ratio: 1.580651e-02	ci left: 6.667881e-01	ci right 6.774452e-01	k: 20164	n:30000
KS ci ratio: 1.083124e-01	ci left: 3.956314e-02	ci right 4.412613e-02	k: 1254	n:30000
SLC6A12   30000 perm   6 sec   (4861 perm/sec)   p_kst 4.180000e-02   p_cons 6.721333e-01   p_joint 1.143667e-01

Joint ci ratio: 5.592943e-02	ci left: 1.063076e-01	ci right 1.124492e-01	k: 4374	n:40000
Cons ci ratio: 1.369306e-02	ci left: 6.673743e-01	ci right 6.766007e-01	k: 26880	n:40000
KS ci ratio: 9.515489e-02	ci left: 3.876009e-02	ci right 4.265695e-02	k: 1627	n:40000
SLC6A12   40000 perm   8 sec   (4737 perm/sec)   p_kst 4.067500e-02   p_cons 6.720000e-01   p_joint 1.093500e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A12.3_1901_40000_0.040675_0.672_0.10935.png
                gene_name: SLC6A12
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 70 percent done.
SLC6A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.440827e-03	ci left: 9.704780e-01	ci right 9.768420e-01	k: 9738	n:10000
Cons ci ratio: 3.092077e-02	ci left: 6.067866e-01	ci right 6.259455e-01	k: 6164	n:10000
KS ci ratio: 3.585597e-02	ci left: 5.345771e-01	ci right 5.541970e-01	k: 5444	n:10000
SLC6A14   10000 perm   2 sec   (5742 perm/sec)   p_kst 5.444000e-01   p_cons 6.164000e-01   p_joint 9.738000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A14.3_1985_10000_0.5444_0.6164_0.9738.png
                gene_name: SLC6A14
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 72 percent done.
SLC6A16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.642413e-02	ci left: 8.435630e-01	ci right 8.576321e-01	k: 8507	n:10000
Cons ci ratio: 4.463999e-02	ci left: 4.255526e-01	ci right 4.450851e-01	k: 4353	n:10000
KS ci ratio: 1.832994e-02	ci left: 8.129369e-01	ci right 8.280759e-01	k: 8206	n:10000
SLC6A16   10000 perm   2 sec   (5475 perm/sec)   p_kst 8.206000e-01   p_cons 4.353000e-01   p_joint 8.507000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A16.3_2255_10000_0.8206_0.4353_0.8507.png
                gene_name: SLC6A16
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 73 percent done.
SLC6A20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.767639e-03	ci left: 9.583798e-01	ci right 9.659480e-01	k: 9623	n:10000
Cons ci ratio: 3.402236e-02	ci left: 5.605282e-01	ci right 5.800308e-01	k: 5703	n:10000
KS ci ratio: 3.116972e-02	ci left: 6.029702e-01	ci right 6.221641e-01	k: 6126	n:10000
SLC6A20   10000 perm   2 sec   (5947 perm/sec)   p_kst 6.126000e-01   p_cons 5.703000e-01   p_joint 9.623000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A20.3_1823_10000_0.6126_0.5703_0.9623.png
                gene_name: SLC6A20
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 75 percent done.
SLC7A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.639027e-02	ci left: 3.165168e-01	ci right 3.349849e-01	k: 3257	n:10000
Cons ci ratio: 5.567918e-02	ci left: 3.220751e-01	ci right 3.406233e-01	k: 3313	n:10000
KS ci ratio: 6.694906e-02	ci left: 2.466773e-01	ci right 2.638654e-01	k: 2552	n:10000
SLC7A10   10000 perm   2 sec   (5797 perm/sec)   p_kst 2.552000e-01   p_cons 3.313000e-01   p_joint 3.257000e-01

Outputting figure to mutsig2_images.part000000000161/SLC7A10.3_1616_10000_0.2552_0.3313_0.3257.png
                gene_name: SLC7A10
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 76 percent done.
SLC7A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.404318e-02	ci left: 5.602275e-01	ci right 5.797317e-01	k: 5700	n:10000
Cons ci ratio: 2.252919e-02	ci left: 7.431099e-01	ci right 7.601433e-01	k: 7517	n:10000
KS ci ratio: 4.913932e-02	ci left: 3.792292e-01	ci right 3.984357e-01	k: 3888	n:10000
SLC7A11   10000 perm   2 sec   (5640 perm/sec)   p_kst 3.888000e-01   p_cons 7.517000e-01   p_joint 5.700000e-01

Outputting figure to mutsig2_images.part000000000161/SLC7A11.3_1554_10000_0.3888_0.7517_0.57.png
                gene_name: SLC7A11
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 77 percent done.
SLC7A13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.117623e-02	ci left: 7.657748e-01	ci right 7.822653e-01	k: 7741	n:10000
KS ci ratio: 6.390347e-03	ci left: 9.709012e-01	ci right 9.772186e-01	k: 9742	n:10000
SLC7A13   10000 perm   2 sec   (5918 perm/sec)   p_kst 9.742000e-01   p_cons 7.741000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC7A13.3_1429_10000_0.9742_0.7741_1.png
                gene_name: SLC7A13
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
SLC38A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.921266e-02	ci left: 6.334184e-01	ci right 6.522983e-01	k: 6429	n:10000
Cons ci ratio: 5.384612e-02	ci left: 3.369706e-01	ci right 3.557190e-01	k: 3463	n:10000
KS ci ratio: 3.725154e-02	ci left: 5.155566e-01	ci right 5.352286e-01	k: 5254	n:10000
SLC38A8   10000 perm   2 sec   (6140 perm/sec)   p_kst 5.254000e-01   p_cons 3.463000e-01   p_joint 6.429000e-01

Outputting figure to mutsig2_images.part000000000161/SLC38A8.2_1348_10000_0.5254_0.3463_0.6429.png
                gene_name: SLC38A8
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 80 percent done.
SLC39A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.606061e-02	ci left: 8.492710e-01	ci right 8.631208e-01	k: 8563	n:10000
Cons ci ratio: 4.773191e-02	ci left: 3.930670e-01	ci right 4.123897e-01	k: 4027	n:10000
KS ci ratio: 1.626875e-02	ci left: 8.460089e-01	ci right 8.599848e-01	k: 8531	n:10000
SLC39A11   10000 perm   2 sec   (6414 perm/sec)   p_kst 8.531000e-01   p_cons 4.027000e-01   p_joint 8.563000e-01

Outputting figure to mutsig2_images.part000000000161/SLC39A11.2_1065_10000_0.8531_0.4027_0.8563.png
                gene_name: SLC39A11
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 82 percent done.
SLC39A14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.500802e-02	ci left: 8.654978e-01	ci right 8.786846e-01	k: 8722	n:10000
Cons ci ratio: 2.073636e-01	ci left: 3.091404e-02	ci right 3.816041e-02	k: 344	n:10000
KS ci ratio: 7.632823e-02	ci left: 2.006723e-01	ci right 2.166978e-01	k: 2086	n:10000
SLC39A14   10000 perm   2 sec   (6166 perm/sec)   p_kst 2.086000e-01   p_cons 3.440000e-02   p_joint 8.722000e-01

Joint ci ratio: 1.507536e-01	ci left: 3.023012e-02	ci right 3.520695e-02	k: 653	n:20000
Cons ci ratio: 1.518370e-01	ci left: 2.979665e-02	ci right 3.474056e-02	k: 644	n:20000
KS ci ratio: 5.404649e-02	ci left: 2.025907e-01	ci right 2.138943e-01	k: 4164	n:20000
SLC39A14   20000 perm   4 sec   (5523 perm/sec)   p_kst 2.082000e-01   p_cons 3.220000e-02   p_joint 3.265000e-02

Joint ci ratio: 8.973318e-03	ci left: 8.602378e-01	ci right 8.680249e-01	k: 25925	n:30000
Cons ci ratio: 8.557791e-02	ci left: 6.256256e-02	ci right 6.818863e-02	k: 1960	n:30000
KS ci ratio: 4.405548e-02	ci left: 2.041793e-01	ci right 2.134105e-01	k: 6263	n:30000
SLC39A14   30000 perm   6 sec   (5267 perm/sec)   p_kst 2.087667e-01   p_cons 6.533333e-02   p_joint 8.641667e-01

Outputting figure to mutsig2_images.part000000000161/SLC39A14.2_1803_30000_0.20877_0.065333_0.86417.png
                gene_name: SLC39A14
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 83 percent done.
SLC39A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.707822e-02	ci left: 8.331748e-01	ci right 8.476263e-01	k: 8405	n:10000
Cons ci ratio: 3.522458e-02	ci left: 5.433915e-01	ci right 5.629775e-01	k: 5532	n:10000
KS ci ratio: 2.860469e-02	ci left: 6.430738e-01	ci right 6.618374e-01	k: 6525	n:10000
SLC39A6   10000 perm   2 sec   (5911 perm/sec)   p_kst 6.525000e-01   p_cons 5.532000e-01   p_joint 8.405000e-01

Outputting figure to mutsig2_images.part000000000161/SLC39A6.2_2316_10000_0.6525_0.5532_0.8405.png
                gene_name: SLC39A6
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 85 percent done.
SLC3A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.342080e-02	ci left: 3.405470e-01	ci right 3.593405e-01	k: 3499	n:10000
Cons ci ratio: 9.128017e-02	ci left: 1.485467e-01	ci right 1.628545e-01	k: 1556	n:10000
KS ci ratio: 4.347016e-02	ci left: 4.386187e-01	ci right 4.582113e-01	k: 4484	n:10000
SLC3A2   10000 perm   2 sec   (6215 perm/sec)   p_kst 4.484000e-01   p_cons 1.556000e-01   p_joint 3.499000e-01

Outputting figure to mutsig2_images.part000000000161/SLC3A2.2_2041_10000_0.4484_0.1556_0.3499.png
                gene_name: SLC3A2
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 86 percent done.
SLC41A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.184581e-02	ci left: 2.776517e-01	ci right 2.954728e-01	k: 2865	n:10000
KS ci ratio: 5.364460e-02	ci left: 3.386594e-01	ci right 3.574292e-01	k: 3480	n:10000
SLC41A2   10000 perm   2 sec   (6135 perm/sec)   p_kst 3.480000e-01   p_cons 2.865000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC41A2.2_1762_10000_0.348_0.2865_1.png
                gene_name: SLC41A2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
SLC43A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.200305e-02	ci left: 1.783175e-01	ci right 1.936658e-01	k: 1859	n:10000
Cons ci ratio: 1.166900e-01	ci left: 9.545302e-02	ci right 1.073803e-01	k: 1013	n:10000
KS ci ratio: 1.172831e-02	ci left: 9.123470e-01	ci right 9.232082e-01	k: 9179	n:10000
SLC43A2   10000 perm   2 sec   (5946 perm/sec)   p_kst 9.179000e-01   p_cons 1.013000e-01   p_joint 1.859000e-01

Joint ci ratio: 5.481199e-02	ci left: 1.980377e-01	ci right 2.092486e-01	k: 4072	n:20000
Cons ci ratio: 8.233326e-02	ci left: 9.759325e-02	ci right 1.060229e-01	k: 2035	n:20000
KS ci ratio: 8.439069e-03	ci left: 9.112535e-01	ci right 9.190253e-01	k: 18304	n:20000
SLC43A2   20000 perm   4 sec   (5346 perm/sec)   p_kst 9.152000e-01   p_cons 1.017500e-01   p_joint 2.036000e-01

Outputting figure to mutsig2_images.part000000000161/SLC43A2.2_1762_20000_0.9152_0.10175_0.2036.png
                gene_name: SLC43A2
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 89 percent done.
SLC5A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.529986e-02	ci left: 2.561716e-01	ci right 2.735656e-01	k: 2648	n:10000
KS ci ratio: 1.102190e-02	ci left: 9.215196e-01	ci right 9.318302e-01	k: 9268	n:10000
SLC5A10   10000 perm   2 sec   (5434 perm/sec)   p_kst 9.268000e-01   p_cons 2.648000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC5A10.2_1899_10000_0.9268_0.2648_1.png
                gene_name: SLC5A10
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
SLC5A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.300808e-03	ci left: 9.858854e-01	ci right 9.902234e-01	k: 9882	n:10000
KS ci ratio: 2.176266e-02	ci left: 7.559561e-01	ci right 7.726896e-01	k: 7644	n:10000
SLC5A3   10000 perm   2 sec   (5801 perm/sec)   p_kst 7.644000e-01   p_cons 9.882000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC5A3.2_2161_10000_0.7644_0.9882_1.png
                gene_name: SLC5A3
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
SLC5A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.360009e-01	ci left: 7.146123e-02	ci right 8.198693e-02	k: 766	n:10000
Cons ci ratio: 1.011813e-01	ci left: 1.238583e-01	ci right 1.371578e-01	k: 1304	n:10000
KS ci ratio: 1.027259e-01	ci left: 1.205332e-01	ci right 1.336849e-01	k: 1270	n:10000
SLC5A6   10000 perm   2 sec   (5996 perm/sec)   p_kst 1.270000e-01   p_cons 1.304000e-01   p_joint 7.660000e-02

Joint ci ratio: 8.595144e-02	ci left: 9.013685e-02	ci right 9.828157e-02	k: 1883	n:20000
Cons ci ratio: 7.049484e-02	ci left: 1.291596e-01	ci right 1.386471e-01	k: 2677	n:20000
KS ci ratio: 7.197603e-02	ci left: 1.244821e-01	ci right 1.338260e-01	k: 2582	n:20000
SLC5A6   20000 perm   4 sec   (5314 perm/sec)   p_kst 1.291000e-01   p_cons 1.338500e-01   p_joint 9.415000e-02

Outputting figure to mutsig2_images.part000000000161/SLC5A6.2_1968_20000_0.1291_0.13385_0.09415.png
                gene_name: SLC5A6
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.098 

Current progress: 93 percent done.
SLC6A18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.704442e-02	ci left: 4.000388e-01	ci right 4.194138e-01	k: 4097	n:10000
Cons ci ratio: 3.242483e-02	ci left: 5.839977e-01	ci right 6.033477e-01	k: 5937	n:10000
KS ci ratio: 9.198086e-02	ci left: 1.465847e-01	ci right 1.608177e-01	k: 1536	n:10000
SLC6A18   10000 perm   2 sec   (5970 perm/sec)   p_kst 1.536000e-01   p_cons 5.937000e-01   p_joint 4.097000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A18.2_1935_10000_0.1536_0.5937_0.4097.png
                gene_name: SLC6A18
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 94 percent done.
SLC6A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.040429e-01	ci left: 1.177960e-01	ci right 1.308238e-01	k: 1242	n:10000
Cons ci ratio: 1.359049e-01	ci left: 7.155808e-02	ci right 8.209001e-02	k: 767	n:10000
KS ci ratio: 3.053635e-02	ci left: 6.127133e-01	ci right 6.318154e-01	k: 6223	n:10000
SLC6A3   10000 perm   2 sec   (5938 perm/sec)   p_kst 6.223000e-01   p_cons 7.670000e-02   p_joint 1.242000e-01

Joint ci ratio: 7.532867e-02	ci left: 1.147399e-01	ci right 1.237711e-01	k: 2384	n:20000
Cons ci ratio: 8.005400e-02	ci left: 1.027483e-01	ci right 1.113663e-01	k: 2140	n:20000
KS ci ratio: 2.175689e-02	ci left: 6.119769e-01	ci right 6.254886e-01	k: 12375	n:20000
SLC6A3   20000 perm   4 sec   (5337 perm/sec)   p_kst 6.187500e-01   p_cons 1.070000e-01   p_joint 1.192000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A3.2_1919_20000_0.61875_0.107_0.1192.png
                gene_name: SLC6A3
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 96 percent done.
SLC6A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.958053e-02	ci left: 2.930100e-01	ci right 3.111054e-01	k: 3020	n:10000
KS ci ratio: 2.917451e-02	ci left: 6.340217e-01	ci right 6.528946e-01	k: 6435	n:10000
SLC6A6   10000 perm   2 sec   (6092 perm/sec)   p_kst 6.435000e-01   p_cons 3.020000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC6A6.2_1919_10000_0.6435_0.302_1.png
                gene_name: SLC6A6
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
SLC6A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.050389e-02	ci left: 6.132157e-01	ci right 6.323128e-01	k: 6228	n:10000
Cons ci ratio: 7.250119e-02	ci left: 2.179321e-01	ci right 2.344277e-01	k: 2261	n:10000
KS ci ratio: 3.988200e-02	ci left: 4.814554e-01	ci right 5.011497e-01	k: 4913	n:10000
SLC6A7   10000 perm   2 sec   (5893 perm/sec)   p_kst 4.913000e-01   p_cons 2.261000e-01   p_joint 6.228000e-01

Outputting figure to mutsig2_images.part000000000161/SLC6A7.2_1967_10000_0.4913_0.2261_0.6228.png
                gene_name: SLC6A7
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 99 percent done.
SLC7A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.256392e-02	ci left: 9.010357e-01	ci right 9.125260e-01	k: 9069	n:10000
KS ci ratio: 9.830757e-03	ci left: 9.360983e-01	ci right 9.454429e-01	k: 9409	n:10000
SLC7A1   10000 perm   2 sec   (5952 perm/sec)   p_kst 9.409000e-01   p_cons 9.069000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000161/SLC7A1.2_1934_10000_0.9409_0.9069_1.png
                gene_name: SLC7A1
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000161
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 161 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1530>
Subject: Job 9894142: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1530>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000162> was used as the working directory.
Started at Sat Oct  6 00:30:13 2012
Results reported at Sat Oct  6 05:27:08 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000162.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000162.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 162  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000162.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  18927.42 sec.
    Max Memory :      6564 MB
    Max Swap   :      8919 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
162
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 162
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 162: processing genes 14515 - 14604
Calculating significance of each gene.
Using projection method.
14515	SLC7A3	3.654369e-01
14516	SLC7A4	1
14517	SLC7A5	8.811834e-01
14518	SLC7A6	1
14519	SLC7A6OS	6.660102e-01
14520	SLC7A7	8.483573e-01
14521	SLC7A8	1.923430e-01
14522	SLC7A9	8.001395e-02
14523	SLC8A1	9.522838e-04
14524	SLC8A2	7.666721e-01
14525	SLC8A3	3.492260e-01
14526	SLC9A1	8.166329e-01
14527	SLC9A10	2.341927e-01
14528	SLC9A11	2.224182e-02
14529	SLC9A2	8.600718e-01
14530	SLC9A3	9.092905e-01
14531	SLC9A3R1	2.761158e-01
14532	SLC9A3R2	1
14533	SLC9A4	1.402965e-01
14534	SLC9A5	9.058011e-01
14535	SLC9A6	3.176511e-01
14536	SLC9A7	2.532674e-01
14537	SLC9A8	6.350140e-01
14538	SLC9A9	4.388162e-04
14539	SLCO1A2	1.496333e-01
14540	SLCO1B1	1.026398e-02
14541	SLCO1B3	1.987310e-03
14542	SLCO1C1	7.336537e-02
14543	SLCO2A1	7.555684e-01
14544	SLCO2B1	4.071229e-01
14545	SLCO3A1	6.334034e-01
14546	SLCO4A1	9.500216e-01
14547	SLCO4C1	1.542604e-03
14548	SLCO5A1	1.169818e-01
14549	SLCO6A1	1.593222e-03
14550	SLFN11	2.663625e-01
14551	SLFN12	3.780206e-01
14552	SLFN13	8.582109e-02
14553	SLFN5	1.767000e-01
14554	SLFNL1	8.642450e-01
14555	SLIT1	2.316859e-01
14556	SLIT2	8.267469e-02
14557	SLIT3	2.925899e-01
14558	SLITRK1	1.927074e-06
14559	SLITRK2	1.714011e-02
In gene SLITRK3 the following bins exceed PROBCAP:
    COAD-AA-A017	categ 6	N = 2938    n = 1	mu =   2.63e-07
14560	SLITRK3	1.770765e-02
14561	SLITRK4	1.344676e-02
14562	SLITRK5	8.012128e-03
14563	SLITRK6	3.269288e-02
14564	SLK	2.521146e-01
14565	SLMAP	9.859520e-01
14566	SLMO1	1
14567	SLMO2	1
14568	SLN	8.167191e-02
14569	SLPI	1
14570	SLTM	5.910956e-01
14571	SLU7	4.602942e-01
14572	SLURP1	1
14573	SMAD1	5.631838e-01
In gene SMAD2 the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 1444    n = 1	mu =   2.96e-07
14574	SMAD2	1.883060e-11
14575	SMAD3	7.341989e-03
14576	SMAD4	8.881784e-16
14577	SMAD5	8.752234e-01
14578	SMAD6	1
14579	SMAD7	1
14580	SMAD9	5.884164e-01
14581	SMAGP	1
14582	SMAP1	6.197053e-01
14583	SMAP2	2.967263e-02
In gene SMARCA1 the following bins exceed PROBCAP:
    COAD-AA-3529	categ 6	N = 3221    n = 1	mu =   2.41e-07
14584	SMARCA1	3.102232e-02
14585	SMARCA2	8.131625e-01
14586	SMARCA4	5.829593e-01
14587	SMARCA5	8.652595e-01
14588	SMARCAD1	1.977326e-02
14589	SMARCAL1	2.396894e-02
14590	SMARCB1	2.854706e-01
14591	SMARCC1	8.294598e-01
14592	SMARCC2	7.628683e-01
In gene SMARCD1 the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 1419    n = 1	mu =   7.59e-07
14593	SMARCD1	2.434484e-01
14594	SMARCD2	7.646180e-01
14595	SMARCD3	5.225051e-01
14596	SMARCE1	5.783219e-01
14597	SMC1A	4.371747e-02
14598	SMC1B	8.431668e-01
14599	SMC2	1.984761e-01
14600	SMC3	9.560267e-01
14601	SMC4	2.681999e-02
14602	SMC5	7.506734e-01
14603	SMC6	9.802285e-01
14604	SMCHD1	2.980898e-01
Done

Running MutSig 2:
Scatter job 162: processing genes 14515 - 14604
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SMAD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
KS ci ratio: 2.489076e-01	ci left: 2.118344e-02	ci right 2.729802e-02	k: 241	n:10000
SMAD4   10000 perm   3 sec   (3651 perm/sec)   p_kst 2.410000e-02   p_cons 4.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 1.011735e+00	ci left: 3.827477e-04	ci right 1.174202e-03	k: 14	n:20000
KS ci ratio: 1.732762e-01	ci left: 2.278476e-02	ci right 2.715484e-02	k: 498	n:20000
SMAD4   20000 perm   10 sec   (2016 perm/sec)   p_kst 2.490000e-02   p_cons 7.000000e-04   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 8.170495e-01	ci left: 4.596314e-04	ci right 1.110066e-03	k: 22	n:30000
KS ci ratio: 1.410463e-01	ci left: 2.332713e-02	ci right 2.689898e-02	k: 752	n:30000
SMAD4   30000 perm   13 sec   (2309 perm/sec)   p_kst 2.506667e-02   p_cons 7.333333e-04   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 7.276527e-01	ci left: 4.651937e-04	ci right 1.011537e-03	k: 28	n:40000
KS ci ratio: 1.224005e-01	ci left: 2.346781e-02	ci right 2.655168e-02	k: 999	n:40000
SMAD4   40000 perm   16 sec   (2482 perm/sec)   p_kst 2.497500e-02   p_cons 7.000000e-04   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 6.720391e-01	ci left: 4.543558e-04	ci right 9.267617e-04	k: 33	n:50000
KS ci ratio: 1.105260e-01	ci left: 2.318206e-02	ci right 2.591353e-02	k: 1226	n:50000
SMAD4   50000 perm   19 sec   (2585 perm/sec)   p_kst 2.452000e-02   p_cons 6.600000e-04   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 6.357013e-01	ci left: 4.342262e-04	ci right 8.498946e-04	k: 37	n:60000
KS ci ratio: 1.016560e-01	ci left: 2.295263e-02	ci right 2.542703e-02	k: 1450	n:60000
SMAD4   60000 perm   23 sec   (2655 perm/sec)   p_kst 2.416667e-02   p_cons 6.166667e-04   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 6.046833e-01	ci left: 4.203504e-04	ci right 7.945046e-04	k: 41	n:70000
KS ci ratio: 9.448294e-02	ci left: 2.286488e-02	ci right 2.514624e-02	k: 1679	n:70000
SMAD4   70000 perm   26 sec   (2701 perm/sec)   p_kst 2.398571e-02   p_cons 5.857143e-04   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 5.541950e-01	ci left: 4.531642e-04	ci right 8.096776e-04	k: 49	n:80000
KS ci ratio: 8.904831e-02	ci left: 2.259584e-02	ci right 2.471390e-02	k: 1891	n:80000
SMAD4   80000 perm   29 sec   (2729 perm/sec)   p_kst 2.363750e-02   p_cons 6.125000e-04   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 5.382919e-01	ci left: 4.315412e-04	ci right 7.576105e-04	k: 52	n:90000
KS ci ratio: 8.388500e-02	ci left: 2.269427e-02	ci right 2.469215e-02	k: 2131	n:90000
SMAD4   90000 perm   33 sec   (2744 perm/sec)   p_kst 2.367778e-02   p_cons 5.777778e-04   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 5.190661e-01	ci left: 4.230448e-04	ci right 7.271458e-04	k: 56	n:100000
KS ci ratio: 7.898285e-02	ci left: 2.308966e-02	ci right 2.499809e-02	k: 2403	n:100000
SMAD4   100000 perm   36 sec   (2752 perm/sec)   p_kst 2.403000e-02   p_cons 5.600000e-04   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 4.976979e-01	ci left: 4.242091e-04	ci right 7.122806e-04	k: 61	n:110000
KS ci ratio: 7.480728e-02	ci left: 2.344270e-02	ci right 2.527341e-02	k: 2678	n:110000
SMAD4   110000 perm   40 sec   (2742 perm/sec)   p_kst 2.434545e-02   p_cons 5.545455e-04   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 4.787685e-01	ci left: 4.253947e-04	ci right 6.996825e-04	k: 66	n:120000
KS ci ratio: 6.882030e-02	ci left: 2.541827e-02	ci right 2.723806e-02	k: 3158	n:120000
SMAD4   120000 perm   45 sec   (2682 perm/sec)   p_kst 2.631667e-02   p_cons 5.500000e-04   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 4.650896e-01	ci left: 4.197805e-04	ci right 6.802655e-04	k: 70	n:130000
KS ci ratio: 6.636230e-02	ci left: 2.527034e-02	ci right 2.701242e-02	k: 3397	n:130000
SMAD4   130000 perm   49 sec   (2678 perm/sec)   p_kst 2.613077e-02   p_cons 5.384615e-04   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 4.525197e-01	ci left: 4.150643e-04	ci right 6.635282e-04	k: 74	n:140000
KS ci ratio: 6.401468e-02	ci left: 2.525002e-02	ci right 2.692683e-02	k: 3651	n:140000
SMAD4   140000 perm   52 sec   (2669 perm/sec)   p_kst 2.607857e-02   p_cons 5.285714e-04   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 4.327718e-01	ci left: 4.288604e-04	ci right 6.711267e-04	k: 81	n:150000
KS ci ratio: 6.161692e-02	ci left: 2.546317e-02	ci right 2.708854e-02	k: 3940	n:150000
SMAD4   150000 perm   57 sec   (2625 perm/sec)   p_kst 2.626667e-02   p_cons 5.400000e-04   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 4.130868e-01	ci left: 4.467375e-04	ci right 6.844696e-04	k: 89	n:160000
KS ci ratio: 5.963655e-02	ci left: 2.550904e-02	ci right 2.708319e-02	k: 4206	n:160000
SMAD4   160000 perm   61 sec   (2613 perm/sec)   p_kst 2.628750e-02   p_cons 5.562500e-04   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 4.020699e-01	ci left: 4.468552e-04	ci right 6.766181e-04	k: 94	n:170000
KS ci ratio: 5.770986e-02	ci left: 2.566044e-02	ci right 2.719107e-02	k: 4491	n:170000
SMAD4   170000 perm   65 sec   (2599 perm/sec)   p_kst 2.641765e-02   p_cons 5.529412e-04   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 3.918900e-01	ci left: 4.470346e-04	ci right 6.695652e-04	k: 99	n:180000
KS ci ratio: 5.603091e-02	ci left: 2.572998e-02	ci right 2.721866e-02	k: 4764	n:180000
SMAD4   180000 perm   70 sec   (2584 perm/sec)   p_kst 2.646667e-02   p_cons 5.500000e-04   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 3.899499e-01	ci left: 4.282514e-04	ci right 6.401046e-04	k: 100	n:190000
KS ci ratio: 5.453494e-02	ci left: 2.575123e-02	ci right 2.720011e-02	k: 5029	n:190000
SMAD4   190000 perm   74 sec   (2560 perm/sec)   p_kst 2.646842e-02   p_cons 5.263158e-04   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 3.806422e-01	ci left: 4.294174e-04	ci right 6.355094e-04	k: 105	n:200000
KS ci ratio: 5.331326e-02	ci left: 2.561785e-02	ci right 2.702593e-02	k: 5263	n:200000
SMAD4   200000 perm   79 sec   (2531 perm/sec)   p_kst 2.631500e-02   p_cons 5.250000e-04   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 3.703055e-01	ci left: 4.348447e-04	ci right 6.365020e-04	k: 111	n:210000
KS ci ratio: 5.213119e-02	ci left: 2.553511e-02	ci right 2.690658e-02	k: 5505	n:210000
SMAD4   210000 perm   84 sec   (2505 perm/sec)   p_kst 2.621429e-02   p_cons 5.285714e-04   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 3.623069e-01	ci left: 4.357146e-04	ci right 6.323802e-04	k: 116	n:220000
KS ci ratio: 5.089272e-02	ci left: 2.559039e-02	ci right 2.693122e-02	k: 5776	n:220000
SMAD4   220000 perm   89 sec   (2480 perm/sec)   p_kst 2.625455e-02   p_cons 5.272727e-04   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 3.577513e-01	ci left: 4.286339e-04	ci right 6.191043e-04	k: 119	n:230000
KS ci ratio: 4.974274e-02	ci left: 2.563692e-02	ci right 2.694897e-02	k: 6046	n:230000
SMAD4   230000 perm   93 sec   (2463 perm/sec)   p_kst 2.628696e-02   p_cons 5.173913e-04   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 3.437129e-01	ci left: 4.487724e-04	ci right 6.386285e-04	k: 129	n:240000
KS ci ratio: 4.861600e-02	ci left: 2.573341e-02	ci right 2.701973e-02	k: 6329	n:240000
SMAD4   240000 perm   98 sec   (2445 perm/sec)   p_kst 2.637083e-02   p_cons 5.375000e-04   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 3.411014e-01	ci left: 4.381332e-04	ci right 6.217694e-04	k: 131	n:250000
KS ci ratio: 4.763654e-02	ci left: 2.574342e-02	ci right 2.700360e-02	k: 6592	n:250000
SMAD4   250000 perm   103 sec   (2427 perm/sec)   p_kst 2.636800e-02   p_cons 5.240000e-04   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 3.360487e-01	ci left: 4.353586e-04	ci right 6.145432e-04	k: 135	n:260000
KS ci ratio: 4.662328e-02	ci left: 2.585176e-02	ci right 2.708960e-02	k: 6881	n:260000
SMAD4   260000 perm   108 sec   (2409 perm/sec)   p_kst 2.646538e-02   p_cons 5.192308e-04   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 3.312140e-01	ci left: 4.328080e-04	ci right 6.078338e-04	k: 139	n:270000
KS ci ratio: 4.574087e-02	ci left: 2.587542e-02	ci right 2.709033e-02	k: 7149	n:270000
SMAD4   270000 perm   113 sec   (2390 perm/sec)   p_kst 2.647778e-02   p_cons 5.148148e-04   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 3.424113e-01	ci left: 3.879236e-04	ci right 5.512776e-04	k: 130	n:280000
KS ci ratio: 4.495656e-02	ci left: 2.584108e-02	ci right 2.703303e-02	k: 7401	n:280000
SMAD4   280000 perm   118 sec   (2370 perm/sec)   p_kst 2.643214e-02   p_cons 4.642857e-04   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 3.385576e-01	ci left: 3.840072e-04	ci right 5.434943e-04	k: 133	n:290000
KS ci ratio: 4.417867e-02	ci left: 2.584680e-02	ci right 2.701786e-02	k: 7664	n:290000
SMAD4   290000 perm   123 sec   (2349 perm/sec)   p_kst 2.642759e-02   p_cons 4.586207e-04   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 3.336152e-01	ci left: 3.834152e-04	ci right 5.398322e-04	k: 137	n:300000
KS ci ratio: 4.347361e-02	ci left: 2.581273e-02	ci right 2.696311e-02	k: 7915	n:300000
SMAD4   300000 perm   129 sec   (2329 perm/sec)   p_kst 2.638333e-02   p_cons 4.566667e-04   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 3.265903e-01	ci left: 3.887982e-04	ci right 5.433710e-04	k: 143	n:310000
KS ci ratio: 4.279858e-02	ci left: 2.578419e-02	ci right 2.691501e-02	k: 8167	n:310000
SMAD4   310000 perm   134 sec   (2309 perm/sec)   p_kst 2.634516e-02   p_cons 4.612903e-04   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 3.562957e-01	ci left: 3.109217e-04	ci right 4.483916e-04	k: 120	n:320000
KS ci ratio: 4.216432e-02	ci left: 2.574519e-02	ci right 2.685717e-02	k: 8415	n:320000
SMAD4   320000 perm   140 sec   (2291 perm/sec)   p_kst 2.629688e-02   p_cons 3.750000e-04   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 3.519597e-01	ci left: 3.097821e-04	ci right 4.447004e-04	k: 123	n:330000
KS ci ratio: 4.148866e-02	ci left: 2.579266e-02	ci right 2.688841e-02	k: 8691	n:330000
SMAD4   330000 perm   145 sec   (2272 perm/sec)   p_kst 2.633636e-02   p_cons 3.727273e-04   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 3.450708e-01	ci left: 3.140897e-04	ci right 4.476088e-04	k: 128	n:340000
KS ci ratio: 4.081409e-02	ci left: 2.587533e-02	ci right 2.695630e-02	k: 8980	n:340000
SMAD4   340000 perm   151 sec   (2253 perm/sec)   p_kst 2.641176e-02   p_cons 3.764706e-04   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 3.398420e-01	ci left: 3.155616e-04	ci right 4.472276e-04	k: 132	n:350000
KS ci ratio: 4.022490e-02	ci left: 2.588550e-02	ci right 2.695093e-02	k: 9245	n:350000
SMAD4   350000 perm   157 sec   (2234 perm/sec)   p_kst 2.641429e-02   p_cons 3.771429e-04   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 3.348440e-01	ci left: 3.169660e-04	ci right 4.468534e-04	k: 136	n:360000
KS ci ratio: 3.963270e-02	ci left: 2.593099e-02	ci right 2.698221e-02	k: 9523	n:360000
SMAD4   360000 perm   163 sec   (2214 perm/sec)   p_kst 2.645278e-02   p_cons 3.777778e-04   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 3.336299e-01	ci left: 3.108751e-04	ci right 4.377052e-04	k: 137	n:370000
KS ci ratio: 3.906386e-02	ci left: 2.597680e-02	ci right 2.701442e-02	k: 9802	n:370000
SMAD4   370000 perm   169 sec   (2193 perm/sec)   p_kst 2.649189e-02   p_cons 3.702703e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 3.266043e-01	ci left: 3.171755e-04	ci right 4.432797e-04	k: 143	n:380000
KS ci ratio: 3.854437e-02	ci left: 2.598641e-02	ci right 2.701031e-02	k: 10068	n:380000
SMAD4   380000 perm   175 sec   (2174 perm/sec)   p_kst 2.649474e-02   p_cons 3.763158e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 3.254773e-01	ci left: 3.113969e-04	ci right 4.346871e-04	k: 144	n:390000
KS ci ratio: 3.805452e-02	ci left: 2.598291e-02	ci right 2.699338e-02	k: 10329	n:390000
SMAD4   390000 perm   181 sec   (2157 perm/sec)   p_kst 2.648462e-02   p_cons 3.692308e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 3.200062e-01	ci left: 3.150995e-04	ci right 4.373289e-04	k: 149	n:400000
KS ci ratio: 3.758835e-02	ci left: 2.597223e-02	ci right 2.696964e-02	k: 10587	n:400000
SMAD4   400000 perm   187 sec   (2138 perm/sec)   p_kst 2.646750e-02   p_cons 3.725000e-04   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 3.178947e-01	ci left: 3.119017e-04	ci right 4.319297e-04	k: 151	n:410000
KS ci ratio: 3.713539e-02	ci left: 2.596698e-02	ci right 2.695192e-02	k: 10847	n:410000
SMAD4   410000 perm   194 sec   (2119 perm/sec)   p_kst 2.645610e-02   p_cons 3.682927e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 3.127912e-01	ci left: 3.154383e-04	ci right 4.344894e-04	k: 156	n:420000
KS ci ratio: 3.669502e-02	ci left: 2.596677e-02	ci right 2.693978e-02	k: 11109	n:420000
SMAD4   420000 perm   200 sec   (2101 perm/sec)   p_kst 2.645000e-02   p_cons 3.714286e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 3.079259e-01	ci left: 3.188250e-04	ci right 4.369154e-04	k: 161	n:430000
KS ci ratio: 3.625195e-02	ci left: 2.599199e-02	ci right 2.695394e-02	k: 11382	n:430000
SMAD4   430000 perm   206 sec   (2084 perm/sec)   p_kst 2.646977e-02   p_cons 3.744186e-04   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 3.051140e-01	ci left: 3.178728e-04	ci right 4.343265e-04	k: 164	n:440000
KS ci ratio: 3.581351e-02	ci left: 2.603191e-02	ci right 2.698343e-02	k: 11662	n:440000
SMAD4   440000 perm   213 sec   (2067 perm/sec)   p_kst 2.650455e-02   p_cons 3.727273e-04   p_joint 0

Joint ci ratio: 4.438136e-01	ci left: 1.350405e-04	ci right 2.138550e-04	k: 77	n:450000
Cons ci ratio: 2.997126e-01	ci left: 3.231310e-04	ci right 4.390165e-04	k: 170	n:450000
KS ci ratio: 3.540583e-02	ci left: 2.604808e-02	ci right 2.698914e-02	k: 11932	n:450000
SMAD4   450000 perm   219 sec   (2051 perm/sec)   p_kst 2.651556e-02   p_cons 3.777778e-04   p_joint 1.711111e-04

Joint ci ratio: 4.382307e-01	ci left: 1.359698e-04	ci right 2.140337e-04	k: 79	n:460000
Cons ci ratio: 2.945882e-01	ci left: 3.281778e-04	ci right 4.434854e-04	k: 176	n:460000
KS ci ratio: 3.504571e-02	ci left: 2.601404e-02	ci right 2.694412e-02	k: 12179	n:460000
SMAD4   460000 perm   226 sec   (2033 perm/sec)   p_kst 2.647609e-02   p_cons 3.826087e-04   p_joint 1.717391e-04

Joint ci ratio: 4.302374e-01	ci left: 1.387620e-04	ci right 2.165563e-04	k: 82	n:470000
Cons ci ratio: 2.897180e-01	ci left: 3.330260e-04	ci right 4.477481e-04	k: 182	n:470000
KS ci ratio: 3.469348e-02	ci left: 2.598571e-02	ci right 2.690525e-02	k: 12428	n:470000
SMAD4   470000 perm   233 sec   (2016 perm/sec)   p_kst 2.644255e-02   p_cons 3.872340e-04   p_joint 1.744681e-04

Joint ci ratio: 4.938407e-01	ci left: 9.903273e-05	ci right 1.655828e-04	k: 62	n:480000
Cons ci ratio: 2.218539e-01	ci left: 5.779203e-04	ci right 7.240497e-04	k: 311	n:480000
KS ci ratio: 3.435305e-02	ci left: 2.595654e-02	ci right 2.686586e-02	k: 12676	n:480000
SMAD4   480000 perm   240 sec   (2001 perm/sec)   p_kst 2.640833e-02   p_cons 6.479167e-04   p_joint 1.291667e-04

Joint ci ratio: 4.861834e-01	ci left: 1.005888e-04	ci right 1.667859e-04	k: 64	n:490000
Cons ci ratio: 2.204459e-01	ci left: 5.738370e-04	ci right 7.178881e-04	k: 315	n:490000
KS ci ratio: 3.404275e-02	ci left: 2.589824e-02	ci right 2.679717e-02	k: 12909	n:490000
SMAD4   490000 perm   247 sec   (1985 perm/sec)   p_kst 2.634490e-02   p_cons 6.428571e-04   p_joint 1.306122e-04

Joint ci ratio: 4.684963e-01	ci left: 1.073738e-04	ci right 1.746446e-04	k: 69	n:500000
Cons ci ratio: 2.190643e-01	ci left: 5.699198e-04	ci right 7.119701e-04	k: 319	n:500000
KS ci ratio: 3.364486e-02	ci left: 2.598712e-02	ci right 2.687838e-02	k: 13215	n:500000
SMAD4   500000 perm   254 sec   (1968 perm/sec)   p_kst 2.643000e-02   p_cons 6.380000e-04   p_joint 1.380000e-04

Joint ci ratio: 4.651856e-01	ci left: 1.069984e-04	ci right 1.734102e-04	k: 70	n:510000
Cons ci ratio: 2.160467e-01	ci left: 5.754306e-04	ci right 7.166168e-04	k: 328	n:510000
KS ci ratio: 3.332903e-02	ci left: 2.596754e-02	ci right 2.684961e-02	k: 13467	n:510000
SMAD4   510000 perm   261 sec   (1953 perm/sec)   p_kst 2.640588e-02   p_cons 6.431373e-04   p_joint 1.372549e-04

Joint ci ratio: 4.619440e-01	ci left: 1.066392e-04	ci right 1.722216e-04	k: 71	n:520000
Cons ci ratio: 2.128356e-01	ci left: 5.825629e-04	ci right 7.230974e-04	k: 338	n:520000
KS ci ratio: 3.306899e-02	ci left: 2.587627e-02	ci right 2.674825e-02	k: 13681	n:520000
SMAD4   520000 perm   268 sec   (1937 perm/sec)   p_kst 2.630962e-02   p_cons 6.500000e-04   p_joint 1.365385e-04

Joint ci ratio: 4.619446e-01	ci left: 1.046271e-04	ci right 1.689722e-04	k: 71	n:530000
Cons ci ratio: 2.109768e-01	ci left: 5.822912e-04	ci right 7.213747e-04	k: 344	n:530000
KS ci ratio: 3.276291e-02	ci left: 2.586895e-02	ci right 2.673246e-02	k: 13938	n:530000
SMAD4   530000 perm   276 sec   (1923 perm/sec)   p_kst 2.629811e-02   p_cons 6.490566e-04   p_joint 1.339623e-04

Joint ci ratio: 4.466932e-01	ci left: 1.108892e-04	ci right 1.761549e-04	k: 76	n:540000
Cons ci ratio: 2.082772e-01	ci left: 5.872999e-04	ci right 7.255560e-04	k: 353	n:540000
KS ci ratio: 3.243117e-02	ci left: 2.591522e-02	ci right 2.677135e-02	k: 14224	n:540000
SMAD4   540000 perm   283 sec   (1908 perm/sec)   p_kst 2.634074e-02   p_cons 6.537037e-04   p_joint 1.407407e-04

Joint ci ratio: 4.496234e-01	ci left: 1.072601e-04	ci right 1.709300e-04	k: 75	n:550000
Cons ci ratio: 2.076921e-01	ci left: 5.800685e-04	ci right 7.161899e-04	k: 355	n:550000
KS ci ratio: 3.209682e-02	ci left: 2.597969e-02	ci right 2.682894e-02	k: 14521	n:550000
SMAD4   550000 perm   290 sec   (1894 perm/sec)   p_kst 2.640182e-02   p_cons 6.454545e-04   p_joint 1.363636e-04

Joint ci ratio: 4.496239e-01	ci left: 1.053447e-04	ci right 1.678778e-04	k: 75	n:560000
Cons ci ratio: 2.062491e-01	ci left: 5.781759e-04	ci right 7.127916e-04	k: 360	n:560000
KS ci ratio: 3.181451e-02	ci left: 2.597457e-02	ci right 2.681605e-02	k: 14780	n:560000
SMAD4   560000 perm   298 sec   (1880 perm/sec)   p_kst 2.639286e-02   p_cons 6.428571e-04   p_joint 1.339286e-04

Joint ci ratio: 4.438218e-01	ci left: 1.066105e-04	ci right 1.688336e-04	k: 77	n:570000
Cons ci ratio: 2.042780e-01	ci left: 5.796820e-04	ci right 7.131974e-04	k: 367	n:570000
KS ci ratio: 3.149546e-02	ci left: 2.604104e-02	ci right 2.687606e-02	k: 15080	n:570000
SMAD4   570000 perm   306 sec   (1865 perm/sec)   p_kst 2.645614e-02   p_cons 6.438596e-04   p_joint 1.350877e-04

Joint ci ratio: 4.438224e-01	ci left: 1.047724e-04	ci right 1.659227e-04	k: 77	n:580000
Cons ci ratio: 2.018245e-01	ci left: 5.844160e-04	ci right 7.172058e-04	k: 376	n:580000
KS ci ratio: 3.122129e-02	ci left: 2.604708e-02	ci right 2.687490e-02	k: 15346	n:580000
SMAD4   580000 perm   313 sec   (1851 perm/sec)   p_kst 2.645862e-02   p_cons 6.482759e-04   p_joint 1.327586e-04

Joint ci ratio: 4.496255e-01	ci left: 9.998815e-05	ci right 1.593418e-04	k: 75	n:590000
Cons ci ratio: 2.012920e-01	ci left: 5.777292e-04	ci right 7.086108e-04	k: 378	n:590000
KS ci ratio: 3.096331e-02	ci left: 2.603781e-02	ci right 2.685837e-02	k: 15603	n:590000
SMAD4   590000 perm   321 sec   (1837 perm/sec)   p_kst 2.644576e-02   p_cons 6.406780e-04   p_joint 1.271186e-04

Joint ci ratio: 4.410051e-01	ci left: 1.027609e-04	ci right 1.622433e-04	k: 78	n:600000
Cons ci ratio: 1.984322e-01	ci left: 5.855165e-04	ci right 7.160498e-04	k: 389	n:600000
KS ci ratio: 3.070169e-02	ci left: 2.604542e-02	ci right 2.685916e-02	k: 15870	n:600000
SMAD4   600000 perm   329 sec   (1823 perm/sec)   p_kst 2.645000e-02   p_cons 6.483333e-04   p_joint 1.300000e-04

Joint ci ratio: 4.526144e-01	ci left: 9.525676e-05	ci right 1.522931e-04	k: 74	n:610000
Cons ci ratio: 1.964276e-01	ci left: 5.883845e-04	ci right 7.180734e-04	k: 397	n:610000
KS ci ratio: 3.044659e-02	ci left: 2.605280e-02	ci right 2.685990e-02	k: 16137	n:610000
SMAD4   610000 perm   337 sec   (1810 perm/sec)   p_kst 2.645410e-02   p_cons 6.508197e-04   p_joint 1.213115e-04

Joint ci ratio: 4.526149e-01	ci left: 9.372035e-05	ci right 1.498368e-04	k: 74	n:620000
Cons ci ratio: 1.947226e-01	ci left: 5.896319e-04	ci right 7.183340e-04	k: 404	n:620000
KS ci ratio: 3.019775e-02	ci left: 2.605998e-02	ci right 2.686058e-02	k: 16404	n:620000
SMAD4   620000 perm   345 sec   (1797 perm/sec)   p_kst 2.645806e-02   p_cons 6.516129e-04   p_joint 1.193548e-04

Joint ci ratio: 4.619497e-01	ci left: 8.801941e-05	ci right 1.421516e-04	k: 71	n:630000
Cons ci ratio: 1.937684e-01	ci left: 5.863130e-04	ci right 7.135896e-04	k: 408	n:630000
KS ci ratio: 2.997061e-02	ci left: 2.604017e-02	ci right 2.683404e-02	k: 16654	n:630000
SMAD4   630000 perm   353 sec   (1784 perm/sec)   p_kst 2.643492e-02   p_cons 6.476190e-04   p_joint 1.126984e-04

Joint ci ratio: 4.587748e-01	ci left: 8.802533e-05	ci right 1.416731e-04	k: 72	n:640000
Cons ci ratio: 1.923627e-01	ci left: 5.860737e-04	ci right 7.122674e-04	k: 414	n:640000
KS ci ratio: 2.975575e-02	ci left: 2.600858e-02	ci right 2.679571e-02	k: 16896	n:640000
SMAD4   640000 perm   361 sec   (1771 perm/sec)   p_kst 2.640000e-02   p_cons 6.468750e-04   p_joint 1.125000e-04

Joint ci ratio: 4.526161e-01	ci left: 8.939474e-05	ci right 1.429213e-04	k: 74	n:650000
Cons ci ratio: 1.903098e-01	ci left: 5.902402e-04	ci right 7.158179e-04	k: 423	n:650000
KS ci ratio: 2.951804e-02	ci left: 2.602534e-02	ci right 2.680658e-02	k: 17169	n:650000
SMAD4   650000 perm   370 sec   (1758 perm/sec)   p_kst 2.641385e-02   p_cons 6.507692e-04   p_joint 1.138462e-04

Joint ci ratio: 4.496286e-01	ci left: 8.938322e-05	ci right 1.424421e-04	k: 75	n:660000
Cons ci ratio: 1.887580e-01	ci left: 5.914001e-04	ci right 7.160808e-04	k: 430	n:660000
KS ci ratio: 2.932048e-02	ci left: 2.598144e-02	ci right 2.675606e-02	k: 17402	n:660000
SMAD4   660000 perm   378 sec   (1745 perm/sec)   p_kst 2.636667e-02   p_cons 6.515152e-04   p_joint 1.136364e-04

Joint ci ratio: 4.496290e-01	ci left: 8.804913e-05	ci right 1.403161e-04	k: 75	n:670000
Cons ci ratio: 1.859732e-01	ci left: 6.010664e-04	ci right 7.257047e-04	k: 443	n:670000
KS ci ratio: 2.911328e-02	ci left: 2.596258e-02	ci right 2.673107e-02	k: 17651	n:670000
SMAD4   670000 perm   387 sec   (1733 perm/sec)   p_kst 2.634478e-02   p_cons 6.611940e-04   p_joint 1.119403e-04

Joint ci ratio: 4.496294e-01	ci left: 8.675428e-05	ci right 1.382527e-04	k: 75	n:680000
Cons ci ratio: 1.845242e-01	ci left: 6.020440e-04	ci right 7.258035e-04	k: 450	n:680000
KS ci ratio: 2.888803e-02	ci left: 2.598372e-02	ci right 2.674679e-02	k: 17927	n:680000
SMAD4   680000 perm   395 sec   (1721 perm/sec)   p_kst 2.636324e-02   p_cons 6.617647e-04   p_joint 1.102941e-04

Joint ci ratio: 4.556660e-01	ci left: 8.292893e-05	ci right 1.330222e-04	k: 73	n:690000
Cons ci ratio: 1.837117e-01	ci left: 5.988485e-04	ci right 7.213487e-04	k: 454	n:690000
KS ci ratio: 2.867360e-02	ci left: 2.599420e-02	ci right 2.675181e-02	k: 18196	n:690000
SMAD4   690000 perm   404 sec   (1708 perm/sec)   p_kst 2.637101e-02   p_cons 6.579710e-04   p_joint 1.057971e-04

Joint ci ratio: 4.496301e-01	ci left: 8.427556e-05	ci right 1.343027e-04	k: 75	n:700000
Cons ci ratio: 1.831095e-01	ci left: 5.943824e-04	ci right 7.155262e-04	k: 457	n:700000
KS ci ratio: 2.848052e-02	ci left: 2.597460e-02	ci right 2.672647e-02	k: 18444	n:700000
SMAD4   700000 perm   413 sec   (1697 perm/sec)   p_kst 2.634857e-02   p_cons 6.528571e-04   p_joint 1.071429e-04

Joint ci ratio: 4.496305e-01	ci left: 8.308857e-05	ci right 1.324111e-04	k: 75	n:710000
Cons ci ratio: 1.811422e-01	ci left: 5.994534e-04	ci right 7.201741e-04	k: 467	n:710000
KS ci ratio: 2.828662e-02	ci left: 2.596397e-02	ci right 2.671032e-02	k: 18698	n:710000
SMAD4   710000 perm   421 sec   (1685 perm/sec)   p_kst 2.633521e-02   p_cons 6.577465e-04   p_joint 1.056338e-04

Joint ci ratio: 4.467013e-01	ci left: 8.316665e-05	ci right 1.321168e-04	k: 76	n:720000
Cons ci ratio: 1.798025e-01	ci left: 6.004107e-04	ci right 7.203326e-04	k: 474	n:720000
KS ci ratio: 2.808293e-02	ci left: 2.597848e-02	ci right 2.671978e-02	k: 18970	n:720000
SMAD4   720000 perm   430 sec   (1674 perm/sec)   p_kst 2.634722e-02   p_cons 6.583333e-04   p_joint 1.055556e-04

Joint ci ratio: 3.168798e-01	ci left: 1.764363e-04	ci right 2.440727e-04	k: 152	n:730000
Cons ci ratio: 1.784920e-01	ci left: 6.013450e-04	ci right 7.204836e-04	k: 481	n:730000
KS ci ratio: 2.790593e-02	ci left: 2.595179e-02	ci right 2.668759e-02	k: 19212	n:730000
SMAD4   730000 perm   439 sec   (1663 perm/sec)   p_kst 2.631781e-02   p_cons 6.589041e-04   p_joint 2.082192e-04

Joint ci ratio: 3.138179e-01	ci left: 1.777853e-04	ci right 2.451482e-04	k: 155	n:740000
Cons ci ratio: 1.764890e-01	ci left: 6.074233e-04	ci right 7.262717e-04	k: 492	n:740000
KS ci ratio: 2.771322e-02	ci left: 2.596073e-02	ci right 2.669163e-02	k: 19480	n:740000
SMAD4   740000 perm   448 sec   (1652 perm/sec)   p_kst 2.632432e-02   p_cons 6.648649e-04   p_joint 2.094595e-04

Joint ci ratio: 3.108431e-01	ci left: 1.791014e-04	ci right 2.461920e-04	k: 158	n:750000
Cons ci ratio: 1.745519e-01	ci left: 6.133469e-04	ci right 7.318982e-04	k: 503	n:750000
KS ci ratio: 2.753161e-02	ci left: 2.595621e-02	ci right 2.668212e-02	k: 19738	n:750000
SMAD4   750000 perm   457 sec   (1640 perm/sec)   p_kst 2.631733e-02   p_cons 6.706667e-04   p_joint 2.106667e-04

Joint ci ratio: 3.108435e-01	ci left: 1.767448e-04	ci right 2.429527e-04	k: 158	n:760000
Cons ci ratio: 1.736926e-01	ci left: 6.115687e-04	ci right 7.291334e-04	k: 508	n:760000
KS ci ratio: 2.736337e-02	ci left: 2.593353e-02	ci right 2.665430e-02	k: 19982	n:760000
SMAD4   760000 perm   467 sec   (1629 perm/sec)   p_kst 2.629211e-02   p_cons 6.684211e-04   p_joint 2.078947e-04

Joint ci ratio: 3.089068e-01	ci left: 1.768448e-04	ci right 2.425962e-04	k: 160	n:770000
Cons ci ratio: 1.726780e-01	ci left: 6.110807e-04	ci right 7.277938e-04	k: 514	n:770000
KS ci ratio: 2.718850e-02	ci left: 2.592951e-02	ci right 2.664549e-02	k: 20240	n:770000
SMAD4   770000 perm   476 sec   (1618 perm/sec)   p_kst 2.628571e-02   p_cons 6.675325e-04   p_joint 2.077922e-04

Joint ci ratio: 3.060682e-01	ci left: 1.781270e-04	ci right 2.436280e-04	k: 163	n:780000
Cons ci ratio: 1.710251e-01	ci left: 6.155155e-04	ci right 7.318343e-04	k: 524	n:780000
KS ci ratio: 2.701695e-02	ci left: 2.592561e-02	ci right 2.663689e-02	k: 20498	n:780000
SMAD4   780000 perm   485 sec   (1608 perm/sec)   p_kst 2.627949e-02   p_cons 6.717949e-04   p_joint 2.089744e-04

Joint ci ratio: 3.051395e-01	ci left: 1.770410e-04	ci right 2.419067e-04	k: 164	n:790000
Cons ci ratio: 1.698962e-01	ci left: 6.162070e-04	ci right 7.318090e-04	k: 531	n:790000
KS ci ratio: 2.684064e-02	ci left: 2.593691e-02	ci right 2.664379e-02	k: 20768	n:790000
SMAD4   790000 perm   495 sec   (1597 perm/sec)   p_kst 2.628861e-02   p_cons 6.721519e-04   p_joint 2.075949e-04

Joint ci ratio: 3.024026e-01	ci left: 1.782923e-04	ci right 2.429178e-04	k: 167	n:800000
Cons ci ratio: 1.687894e-01	ci left: 6.168835e-04	ci right 7.317819e-04	k: 538	n:800000
KS ci ratio: 2.667099e-02	ci left: 2.594173e-02	ci right 2.664420e-02	k: 21033	n:800000
SMAD4   800000 perm   505 sec   (1586 perm/sec)   p_kst 2.629125e-02   p_cons 6.725000e-04   p_joint 2.087500e-04

Joint ci ratio: 3.015068e-01	ci left: 1.772321e-04	ci right 2.412466e-04	k: 168	n:810000
Cons ci ratio: 1.681668e-01	ci left: 6.139977e-04	ci right 7.278940e-04	k: 542	n:810000
KS ci ratio: 2.649302e-02	ci left: 2.596853e-02	ci right 2.666696e-02	k: 21316	n:810000
SMAD4   810000 perm   514 sec   (1575 perm/sec)   p_kst 2.631605e-02   p_cons 6.691358e-04   p_joint 2.074074e-04

Joint ci ratio: 3.015072e-01	ci left: 1.750707e-04	ci right 2.383046e-04	k: 168	n:820000
Cons ci ratio: 1.669414e-01	ci left: 6.158569e-04	ci right 7.291820e-04	k: 550	n:820000
KS ci ratio: 2.633360e-02	ci left: 2.596561e-02	ci right 2.665970e-02	k: 21575	n:820000
SMAD4   820000 perm   525 sec   (1563 perm/sec)   p_kst 2.631098e-02   p_cons 6.707317e-04   p_joint 2.048780e-04

Joint ci ratio: 3.098732e-01	ci left: 1.629494e-04	ci right 2.237614e-04	k: 159	n:830000
Cons ci ratio: 1.657424e-01	ci left: 6.176743e-04	ci right 7.304360e-04	k: 558	n:830000
KS ci ratio: 2.616656e-02	ci left: 2.598312e-02	ci right 2.667320e-02	k: 21851	n:830000
SMAD4   830000 perm   535 sec   (1551 perm/sec)   p_kst 2.632651e-02   p_cons 6.722892e-04   p_joint 1.915663e-04

Joint ci ratio: 3.079544e-01	ci left: 1.632059e-04	ci right 2.236625e-04	k: 161	n:840000
Cons ci ratio: 1.642792e-01	ci left: 6.217343e-04	ci right 7.341362e-04	k: 568	n:840000
KS ci ratio: 2.600870e-02	ci left: 2.598840e-02	ci right 2.667440e-02	k: 22117	n:840000
SMAD4   840000 perm   546 sec   (1540 perm/sec)   p_kst 2.632976e-02   p_cons 6.761905e-04   p_joint 1.916667e-04

Joint ci ratio: 3.118293e-01	ci left: 1.569458e-04	ci right 2.159607e-04	k: 157	n:850000
Cons ci ratio: 1.627135e-01	ci left: 6.268316e-04	ci right 7.389693e-04	k: 579	n:850000
KS ci ratio: 2.583825e-02	ci left: 2.602396e-02	ci right 2.670633e-02	k: 22409	n:850000
SMAD4   850000 perm   556 sec   (1529 perm/sec)   p_kst 2.636353e-02   p_cons 6.811765e-04   p_joint 1.847059e-04

Joint ci ratio: 3.221941e-01	ci left: 1.444176e-04	ci right 2.009000e-04	k: 147	n:860000
Cons ci ratio: 1.614654e-01	ci left: 6.295836e-04	ci right 7.412658e-04	k: 588	n:860000
KS ci ratio: 2.567459e-02	ci left: 2.605178e-02	ci right 2.673049e-02	k: 22695	n:860000
SMAD4   860000 perm   566 sec   (1519 perm/sec)   p_kst 2.638953e-02   p_cons 6.837209e-04   p_joint 1.709302e-04

Joint ci ratio: 3.189772e-01	ci left: 1.459285e-04	ci right 2.023156e-04	k: 150	n:870000
Cons ci ratio: 1.605144e-01	ci left: 6.300688e-04	ci right 7.411154e-04	k: 595	n:870000
KS ci ratio: 2.552827e-02	ci left: 2.605041e-02	ci right 2.672516e-02	k: 22956	n:870000
SMAD4   870000 perm   576 sec   (1510 perm/sec)   p_kst 2.638621e-02   p_cons 6.839080e-04   p_joint 1.724138e-04

Joint ci ratio: 3.179263e-01	ci left: 1.453157e-04	ci right 2.012434e-04	k: 151	n:880000
Cons ci ratio: 1.595799e-01	ci left: 6.305449e-04	ci right 7.409665e-04	k: 602	n:880000
KS ci ratio: 2.540128e-02	ci left: 2.601521e-02	ci right 2.668564e-02	k: 23187	n:880000
SMAD4   880000 perm   586 sec   (1501 perm/sec)   p_kst 2.634886e-02   p_cons 6.840909e-04   p_joint 1.715909e-04

Joint ci ratio: 3.158551e-01	ci left: 1.457515e-04	ci right 2.014076e-04	k: 153	n:890000
Cons ci ratio: 1.580149e-01	ci left: 6.364077e-04	ci right 7.466593e-04	k: 614	n:890000
KS ci ratio: 2.524850e-02	ci left: 2.603664e-02	ci right 2.670353e-02	k: 23468	n:890000
SMAD4   890000 perm   597 sec   (1492 perm/sec)   p_kst 2.636854e-02   p_cons 6.898876e-04   p_joint 1.719101e-04

Joint ci ratio: 3.138238e-01	ci left: 1.461787e-04	ci right 2.015669e-04	k: 155	n:900000
Cons ci ratio: 1.571233e-01	ci left: 6.368076e-04	ci right 7.464473e-04	k: 621	n:900000
KS ci ratio: 2.508976e-02	ci left: 2.607527e-02	ci right 2.673889e-02	k: 23765	n:900000
SMAD4   900000 perm   607 sec   (1483 perm/sec)   p_kst 2.640556e-02   p_cons 6.900000e-04   p_joint 1.722222e-04

Joint ci ratio: 3.211124e-01	ci left: 1.374927e-04	ci right 1.910490e-04	k: 148	n:910000
Cons ci ratio: 1.562465e-01	ci left: 6.372004e-04	ci right 7.462382e-04	k: 628	n:910000
KS ci ratio: 2.493878e-02	ci left: 2.610324e-02	ci right 2.676352e-02	k: 24053	n:910000
SMAD4   910000 perm   618 sec   (1473 perm/sec)   p_kst 2.643187e-02   p_cons 6.901099e-04   p_joint 1.626374e-04

Joint ci ratio: 3.189787e-01	ci left: 1.379975e-04	ci right 1.913203e-04	k: 150	n:920000
Cons ci ratio: 1.555067e-01	ci left: 6.365417e-04	ci right 7.449029e-04	k: 634	n:920000
KS ci ratio: 2.480618e-02	ci left: 2.609820e-02	ci right 2.675479e-02	k: 24311	n:920000
SMAD4   920000 perm   628 sec   (1464 perm/sec)   p_kst 2.642500e-02   p_cons 6.891304e-04   p_joint 1.630435e-04

Joint ci ratio: 3.189790e-01	ci left: 1.365136e-04	ci right 1.892631e-04	k: 150	n:930000
Cons ci ratio: 1.548982e-01	ci left: 6.348646e-04	ci right 7.424782e-04	k: 639	n:930000
KS ci ratio: 2.467362e-02	ci left: 2.609755e-02	ci right 2.675057e-02	k: 24573	n:930000
SMAD4   930000 perm   639 sec   (1456 perm/sec)   p_kst 2.642258e-02   p_cons 6.870968e-04   p_joint 1.612903e-04

Joint ci ratio: 3.243961e-01	ci left: 1.301716e-04	ci right 1.815026e-04	k: 145	n:940000
Cons ci ratio: 1.539390e-01	ci left: 6.362926e-04	ci right 7.434187e-04	k: 647	n:940000
KS ci ratio: 2.453251e-02	ci left: 2.611913e-02	ci right 2.676890e-02	k: 24856	n:940000
SMAD4   940000 perm   650 sec   (1447 perm/sec)   p_kst 2.644255e-02   p_cons 6.882979e-04   p_joint 1.542553e-04

Joint ci ratio: 3.211136e-01	ci left: 1.317034e-04	ci right 1.830049e-04	k: 148	n:950000
Cons ci ratio: 1.524172e-01	ci left: 6.427546e-04	ci right 7.498013e-04	k: 660	n:950000
KS ci ratio: 2.439629e-02	ci left: 2.613503e-02	ci right 2.678154e-02	k: 25134	n:950000
SMAD4   950000 perm   661 sec   (1438 perm/sec)   p_kst 2.645684e-02   p_cons 6.947368e-04   p_joint 1.557895e-04

Joint ci ratio: 3.211138e-01	ci left: 1.303315e-04	ci right 1.810986e-04	k: 148	n:960000
Cons ci ratio: 1.513899e-01	ci left: 6.450780e-04	ci right 7.517219e-04	k: 669	n:960000
KS ci ratio: 2.426918e-02	ci left: 2.613612e-02	ci right 2.677924e-02	k: 25398	n:960000
SMAD4   960000 perm   672 sec   (1430 perm/sec)   p_kst 2.645625e-02   p_cons 6.968750e-04   p_joint 1.541667e-04

Joint ci ratio: 3.200417e-01	ci left: 1.299359e-04	ci right 1.803453e-04	k: 149	n:970000
Cons ci ratio: 1.508283e-01	ci left: 6.433874e-04	ci right 7.493216e-04	k: 674	n:970000
KS ci ratio: 2.414451e-02	ci left: 2.613617e-02	ci right 2.677594e-02	k: 25661	n:970000
SMAD4   970000 perm   683 sec   (1421 perm/sec)   p_kst 2.645464e-02   p_cons 6.948454e-04   p_joint 1.536082e-04

Joint ci ratio: 3.266425e-01	ci left: 1.229843e-04	ci right 1.718875e-04	k: 143	n:980000
Cons ci ratio: 1.501624e-01	ci left: 6.427141e-04	ci right 7.480283e-04	k: 680	n:980000
KS ci ratio: 2.401842e-02	ci left: 2.614333e-02	ci right 2.677988e-02	k: 25931	n:980000
SMAD4   980000 perm   694 sec   (1412 perm/sec)   p_kst 2.646020e-02   p_cons 6.938776e-04   p_joint 1.459184e-04

Joint ci ratio: 3.232920e-01	ci left: 1.245252e-04	ci right 1.734279e-04	k: 146	n:990000
Cons ci ratio: 1.495054e-01	ci left: 6.420554e-04	ci right 7.467602e-04	k: 686	n:990000
KS ci ratio: 2.389991e-02	ci left: 2.613830e-02	ci right 2.677155e-02	k: 26189	n:990000
SMAD4   990000 perm   705 sec   (1404 perm/sec)   p_kst 2.645354e-02   p_cons 6.929293e-04   p_joint 1.474747e-04

Joint ci ratio: 3.189808e-01	ci left: 1.269576e-04	ci right 1.760149e-04	k: 150	n:1000000
Cons ci ratio: 1.488568e-01	ci left: 6.414109e-04	ci right 7.455164e-04	k: 692	n:1000000
KS ci ratio: 2.377528e-02	ci left: 2.615028e-02	ci right 2.678047e-02	k: 26464	n:1000000
SMAD4   1000000 perm   716 sec   (1396 perm/sec)   p_kst 2.646400e-02   p_cons 6.920000e-04   p_joint 1.500000e-04

Joint ci ratio: 3.179299e-01	ci left: 1.266115e-04	ci right 1.753411e-04	k: 151	n:1010000
Cons ci ratio: 1.482166e-01	ci left: 6.407801e-04	ci right 7.442963e-04	k: 698	n:1010000
KS ci ratio: 2.366941e-02	ci left: 2.612561e-02	ci right 2.675236e-02	k: 26702	n:1010000
SMAD4   1010000 perm   728 sec   (1388 perm/sec)   p_kst 2.643762e-02   p_cons 6.910891e-04   p_joint 1.495050e-04

Joint ci ratio: 3.179301e-01	ci left: 1.253702e-04	ci right 1.736221e-04	k: 151	n:1020000
Cons ci ratio: 1.472714e-01	ci left: 6.429953e-04	ci right 7.461487e-04	k: 707	n:1020000
KS ci ratio: 2.355552e-02	ci left: 2.612189e-02	ci right 2.674551e-02	k: 26961	n:1020000
SMAD4   1020000 perm   739 sec   (1380 perm/sec)   p_kst 2.643235e-02   p_cons 6.931373e-04   p_joint 1.480392e-04

Joint ci ratio: 3.179304e-01	ci left: 1.241530e-04	ci right 1.719365e-04	k: 151	n:1030000
Cons ci ratio: 1.469607e-01	ci left: 6.395580e-04	ci right 7.419244e-04	k: 710	n:1030000
KS ci ratio: 2.343397e-02	ci left: 2.613853e-02	ci right 2.675928e-02	k: 27241	n:1030000
SMAD4   1030000 perm   751 sec   (1372 perm/sec)   p_kst 2.644757e-02   p_cons 6.893204e-04   p_joint 1.466019e-04

Joint ci ratio: 3.211158e-01	ci left: 1.203059e-04	ci right 1.671681e-04	k: 148	n:1040000
Cons ci ratio: 1.462425e-01	ci left: 6.398923e-04	ci right 7.417680e-04	k: 717	n:1040000
KS ci ratio: 2.332473e-02	ci left: 2.613192e-02	ci right 2.674957e-02	k: 27497	n:1040000
SMAD4   1040000 perm   763 sec   (1364 perm/sec)   p_kst 2.643942e-02   p_cons 6.894231e-04   p_joint 1.423077e-04

Joint ci ratio: 3.200436e-01	ci left: 1.200359e-04	ci right 1.666048e-04	k: 149	n:1050000
Cons ci ratio: 1.455348e-01	ci left: 6.402214e-04	ci right 7.416134e-04	k: 724	n:1050000
KS ci ratio: 2.321657e-02	ci left: 2.612638e-02	ci right 2.674100e-02	k: 27754	n:1050000
SMAD4   1050000 perm   775 sec   (1355 perm/sec)   p_kst 2.643238e-02   p_cons 6.895238e-04   p_joint 1.419048e-04

Joint ci ratio: 3.179310e-01	ci left: 1.206392e-04	ci right 1.670704e-04	k: 151	n:1060000
Cons ci ratio: 1.449364e-01	ci left: 6.396363e-04	ci right 7.404830e-04	k: 730	n:1060000
KS ci ratio: 2.311330e-02	ci left: 2.611344e-02	ci right 2.672500e-02	k: 28003	n:1060000
SMAD4   1060000 perm   787 sec   (1347 perm/sec)   p_kst 2.641792e-02   p_cons 6.886792e-04   p_joint 1.424528e-04

Joint ci ratio: 3.179313e-01	ci left: 1.195117e-04	ci right 1.655090e-04	k: 151	n:1070000
Cons ci ratio: 1.441497e-01	ci left: 6.408646e-04	ci right 7.413094e-04	k: 738	n:1070000
KS ci ratio: 2.301306e-02	ci left: 2.609704e-02	ci right 2.670552e-02	k: 28248	n:1070000
SMAD4   1070000 perm   799 sec   (1339 perm/sec)   p_kst 2.640000e-02   p_cons 6.897196e-04   p_joint 1.411215e-04

Joint ci ratio: 2.215393e-01	ci left: 2.577232e-04	ci right 3.227839e-04	k: 312	n:1080000
Cons ci ratio: 1.435681e-01	ci left: 6.402863e-04	ci right 7.402008e-04	k: 744	n:1080000
KS ci ratio: 2.291205e-02	ci left: 2.608555e-02	ci right 2.669106e-02	k: 28498	n:1080000
SMAD4   1080000 perm   811 sec   (1332 perm/sec)   p_kst 2.638704e-02   p_cons 6.888889e-04   p_joint 2.888889e-04

Joint ci ratio: 2.208350e-01	ci left: 2.570919e-04	ci right 3.217589e-04	k: 314	n:1090000
Cons ci ratio: 1.428033e-01	ci left: 6.414886e-04	ci right 7.410121e-04	k: 752	n:1090000
KS ci ratio: 2.280300e-02	ci left: 2.609527e-02	ci right 2.669808e-02	k: 28771	n:1090000
SMAD4   1090000 perm   823 sec   (1325 perm/sec)   p_kst 2.639541e-02   p_cons 6.899083e-04   p_joint 2.880734e-04

Joint ci ratio: 2.194459e-01	ci left: 2.581906e-04	ci right 3.226704e-04	k: 318	n:1100000
Cons ci ratio: 1.418642e-01	ci left: 6.444242e-04	ci right 7.436900e-04	k: 762	n:1100000
KS ci ratio: 2.269870e-02	ci left: 2.609758e-02	ci right 2.669765e-02	k: 29036	n:1100000
SMAD4   1100000 perm   835 sec   (1318 perm/sec)   p_kst 2.639636e-02   p_cons 6.927273e-04   p_joint 2.890909e-04

Joint ci ratio: 2.184213e-01	ci left: 2.584191e-04	ci right 3.226141e-04	k: 321	n:1110000
Cons ci ratio: 1.409434e-01	ci left: 6.473089e-04	ci right 7.463175e-04	k: 772	n:1110000
KS ci ratio: 2.259581e-02	ci left: 2.609985e-02	ci right 2.669722e-02	k: 29301	n:1110000
SMAD4   1110000 perm   847 sec   (1311 perm/sec)   p_kst 2.639730e-02   p_cons 6.954955e-04   p_joint 2.891892e-04

Joint ci ratio: 2.167448e-01	ci left: 2.603328e-04	ci right 3.244408e-04	k: 326	n:1120000
Cons ci ratio: 1.398617e-01	ci left: 6.518674e-04	ci right 7.507443e-04	k: 784	n:1120000
KS ci ratio: 2.249431e-02	ci left: 2.610209e-02	ci right 2.669679e-02	k: 29566	n:1120000
SMAD4   1120000 perm   859 sec   (1304 perm/sec)   p_kst 2.639821e-02   p_cons 7.000000e-04   p_joint 2.910714e-04

Joint ci ratio: 2.160850e-01	ci left: 2.597029e-04	ci right 3.234353e-04	k: 328	n:1130000
Cons ci ratio: 1.391544e-01	ci left: 6.529312e-04	ci right 7.514271e-04	k: 792	n:1130000
KS ci ratio: 2.239417e-02	ci left: 2.610429e-02	ci right 2.669637e-02	k: 29831	n:1130000
SMAD4   1130000 perm   871 sec   (1297 perm/sec)   p_kst 2.639912e-02   p_cons 7.008850e-04   p_joint 2.902655e-04

Joint ci ratio: 2.154313e-01	ci left: 2.590844e-04	ci right 3.224472e-04	k: 330	n:1140000
Cons ci ratio: 1.381989e-01	ci left: 6.565182e-04	ci right 7.548192e-04	k: 803	n:1140000
KS ci ratio: 2.230678e-02	ci left: 2.608029e-02	ci right 2.666948e-02	k: 30066	n:1140000
SMAD4   1140000 perm   884 sec   (1290 perm/sec)   p_kst 2.637368e-02   p_cons 7.043860e-04   p_joint 2.894737e-04

Joint ci ratio: 2.144616e-01	ci left: 2.592998e-04	ci right 3.223923e-04	k: 333	n:1150000
Cons ci ratio: 1.380277e-01	ci left: 6.524883e-04	ci right 7.500548e-04	k: 805	n:1150000
KS ci ratio: 2.221211e-02	ci left: 2.607574e-02	ci right 2.666230e-02	k: 30323	n:1150000
SMAD4   1150000 perm   896 sec   (1283 perm/sec)   p_kst 2.636783e-02   p_cons 7.000000e-04   p_joint 2.895652e-04

Joint ci ratio: 2.208369e-01	ci left: 2.415775e-04	ci right 3.023428e-04	k: 314	n:1160000
Cons ci ratio: 1.373477e-01	ci left: 6.535224e-04	ci right 7.507228e-04	k: 813	n:1160000
KS ci ratio: 2.211828e-02	ci left: 2.607213e-02	ci right 2.665610e-02	k: 30581	n:1160000
SMAD4   1160000 perm   909 sec   (1276 perm/sec)   p_kst 2.636293e-02   p_cons 7.008621e-04   p_joint 2.706897e-04

Joint ci ratio: 2.197927e-01	ci left: 2.419354e-04	ci right 3.024640e-04	k: 317	n:1170000
Cons ci ratio: 1.366776e-01	ci left: 6.545400e-04	ci right 7.513782e-04	k: 821	n:1170000
KS ci ratio: 2.202195e-02	ci left: 2.607709e-02	ci right 2.665859e-02	k: 30849	n:1170000
SMAD4   1170000 perm   922 sec   (1269 perm/sec)   p_kst 2.636667e-02   p_cons 7.017094e-04   p_joint 2.709402e-04

Joint ci ratio: 2.194481e-01	ci left: 2.406859e-04	ci right 3.007948e-04	k: 318	n:1180000
Cons ci ratio: 1.359353e-01	ci left: 6.563601e-04	ci right 7.528976e-04	k: 830	n:1180000
KS ci ratio: 2.192398e-02	ci left: 2.608871e-02	ci right 2.666785e-02	k: 31125	n:1180000
SMAD4   1180000 perm   934 sec   (1263 perm/sec)   p_kst 2.637712e-02   p_cons 7.033898e-04   p_joint 2.694915e-04

Joint ci ratio: 2.194484e-01	ci left: 2.386633e-04	ci right 2.982671e-04	k: 318	n:1190000
Cons ci ratio: 1.356095e-01	ci left: 6.540916e-04	ci right 7.500462e-04	k: 834	n:1190000
KS ci ratio: 2.183266e-02	ci left: 2.608761e-02	ci right 2.666428e-02	k: 31386	n:1190000
SMAD4   1190000 perm   947 sec   (1256 perm/sec)   p_kst 2.637479e-02   p_cons 7.008403e-04   p_joint 2.672269e-04

Joint ci ratio: 2.191054e-01	ci left: 2.374620e-04	ci right 2.966606e-04	k: 319	n:1200000
Cons ci ratio: 1.347248e-01	ci left: 6.574976e-04	ci right 7.532722e-04	k: 845	n:1200000
KS ci ratio: 2.172626e-02	ci left: 2.612466e-02	ci right 2.669930e-02	k: 31693	n:1200000
SMAD4   1200000 perm   960 sec   (1250 perm/sec)   p_kst 2.641083e-02   p_cons 7.041667e-04   p_joint 2.658333e-04

Joint ci ratio: 2.180854e-01	ci left: 2.378431e-04	ci right 2.968237e-04	k: 322	n:1210000
Cons ci ratio: 1.343286e-01	ci left: 6.560569e-04	ci right 7.513181e-04	k: 850	n:1210000
KS ci ratio: 2.163078e-02	ci left: 2.613890e-02	ci right 2.671130e-02	k: 31973	n:1210000
SMAD4   1210000 perm   973 sec   (1243 perm/sec)   p_kst 2.642397e-02   p_cons 7.024793e-04   p_joint 2.661157e-04

Joint ci ratio: 2.297670e-01	ci left: 2.111339e-04	ci right 2.666939e-04	k: 290	n:1220000
Cons ci ratio: 1.337015e-01	ci left: 6.570169e-04	ci right 7.519368e-04	k: 858	n:1220000
KS ci ratio: 2.154684e-02	ci left: 2.612846e-02	ci right 2.669838e-02	k: 32223	n:1220000
SMAD4   1220000 perm   986 sec   (1237 perm/sec)   p_kst 2.641230e-02   p_cons 7.032787e-04   p_joint 2.377049e-04

Joint ci ratio: 2.293733e-01	ci left: 2.101836e-04	ci right 2.653854e-04	k: 291	n:1230000
Cons ci ratio: 1.332371e-01	ci left: 6.563904e-04	ci right 7.508643e-04	k: 864	n:1230000
KS ci ratio: 2.146454e-02	ci left: 2.611657e-02	ci right 2.668403e-02	k: 32471	n:1230000
SMAD4   1230000 perm   999 sec   (1231 perm/sec)   p_kst 2.639919e-02   p_cons 7.024390e-04   p_joint 2.365854e-04

Joint ci ratio: 2.289817e-01	ci left: 2.092487e-04	ci right 2.640979e-04	k: 292	n:1240000
Cons ci ratio: 1.325492e-01	ci left: 6.581138e-04	ci right 7.523082e-04	k: 873	n:1240000
KS ci ratio: 2.138117e-02	ci left: 2.610970e-02	ci right 2.667478e-02	k: 32725	n:1240000
SMAD4   1240000 perm   1013 sec   (1224 perm/sec)   p_kst 2.639113e-02   p_cons 7.040323e-04   p_joint 2.354839e-04

Joint ci ratio: 2.278183e-01	ci left: 2.098374e-04	ci right 2.645222e-04	k: 295	n:1250000
Cons ci ratio: 1.322471e-01	ci left: 6.559428e-04	ci right 7.495957e-04	k: 877	n:1250000
KS ci ratio: 2.129048e-02	ci left: 2.612283e-02	ci right 2.668577e-02	k: 33004	n:1250000
SMAD4   1250000 perm   1026 sec   (1218 perm/sec)   p_kst 2.640320e-02   p_cons 7.016000e-04   p_joint 2.360000e-04

Joint ci ratio: 2.278185e-01	ci left: 2.081720e-04	ci right 2.624228e-04	k: 295	n:1260000
Cons ci ratio: 1.320970e-01	ci left: 6.522717e-04	ci right 7.452864e-04	k: 879	n:1260000
KS ci ratio: 2.120780e-02	ci left: 2.611918e-02	ci right 2.667983e-02	k: 33262	n:1260000
SMAD4   1260000 perm   1040 sec   (1212 perm/sec)   p_kst 2.639841e-02   p_cons 6.976190e-04   p_joint 2.341270e-04

Joint ci ratio: 2.278187e-01	ci left: 2.065328e-04	ci right 2.603565e-04	k: 295	n:1270000
Cons ci ratio: 1.315005e-01	ci left: 6.532272e-04	ci right 7.459247e-04	k: 887	n:1270000
KS ci ratio: 2.112673e-02	ci left: 2.611402e-02	ci right 2.667239e-02	k: 33518	n:1270000
SMAD4   1270000 perm   1053 sec   (1206 perm/sec)   p_kst 2.639213e-02   p_cons 6.984252e-04   p_joint 2.322835e-04

Joint ci ratio: 2.305621e-01	ci left: 1.997644e-04	ci right 2.525404e-04	k: 288	n:1280000
Cons ci ratio: 1.309121e-01	ci left: 6.541688e-04	ci right 7.465522e-04	k: 895	n:1280000
KS ci ratio: 2.103954e-02	ci left: 2.612605e-02	ci right 2.668234e-02	k: 33796	n:1280000
SMAD4   1280000 perm   1067 sec   (1199 perm/sec)   p_kst 2.640312e-02   p_cons 6.992187e-04   p_joint 2.250000e-04

Joint ci ratio: 2.338220e-01	ci left: 1.923749e-04	ci right 2.440212e-04	k: 280	n:1290000
Cons ci ratio: 1.306937e-01	ci left: 6.513471e-04	ci right 7.431667e-04	k: 898	n:1290000
KS ci ratio: 2.097081e-02	ci left: 2.609548e-02	ci right 2.664928e-02	k: 34019	n:1290000
SMAD4   1290000 perm   1081 sec   (1193 perm/sec)   p_kst 2.637132e-02   p_cons 6.961240e-04   p_joint 2.170543e-04

Joint ci ratio: 2.317689e-01	ci left: 1.945170e-04	ci right 2.462142e-04	k: 285	n:1300000
Cons ci ratio: 1.302598e-01	ci left: 6.508015e-04	ci right 7.422160e-04	k: 904	n:1300000
KS ci ratio: 2.088772e-02	ci left: 2.610212e-02	ci right 2.665384e-02	k: 34290	n:1300000
SMAD4   1300000 perm   1095 sec   (1187 perm/sec)   p_kst 2.637692e-02   p_cons 6.953846e-04   p_joint 2.192308e-04

Joint ci ratio: 2.313648e-01	ci left: 1.937512e-04	ci right 2.451423e-04	k: 286	n:1310000
Cons ci ratio: 1.299015e-01	ci left: 6.495261e-04	ci right 7.404912e-04	k: 909	n:1310000
KS ci ratio: 2.081365e-02	ci left: 2.608891e-02	ci right 2.663838e-02	k: 34535	n:1310000
SMAD4   1310000 perm   1109 sec   (1181 perm/sec)   p_kst 2.636260e-02   p_cons 6.938931e-04   p_joint 2.183206e-04

Joint ci ratio: 2.313650e-01	ci left: 1.922834e-04	ci right 2.432851e-04	k: 286	n:1320000
Cons ci ratio: 1.293342e-01	ci left: 6.504695e-04	ci right 7.411384e-04	k: 917	n:1320000
KS ci ratio: 2.073639e-02	ci left: 2.608571e-02	ci right 2.663304e-02	k: 34793	n:1320000
SMAD4   1320000 perm   1123 sec   (1175 perm/sec)   p_kst 2.635833e-02   p_cons 6.946970e-04   p_joint 2.166667e-04

Joint ci ratio: 2.372248e-01	ci left: 1.809290e-04	ci right 2.303131e-04	k: 272	n:1330000
Cons ci ratio: 1.285661e-01	ci left: 6.535827e-04	ci right 7.441032e-04	k: 928	n:1330000
KS ci ratio: 2.065907e-02	ci left: 2.608480e-02	ci right 2.663005e-02	k: 35054	n:1330000
SMAD4   1330000 perm   1137 sec   (1169 perm/sec)   p_kst 2.635639e-02   p_cons 6.977444e-04   p_joint 2.045113e-04

Joint ci ratio: 2.372249e-01	ci left: 1.795787e-04	ci right 2.285944e-04	k: 272	n:1340000
Cons ci ratio: 1.283592e-01	ci left: 6.508721e-04	ci right 7.408609e-04	k: 931	n:1340000
KS ci ratio: 2.058980e-02	ci left: 2.606609e-02	ci right 2.660910e-02	k: 35291	n:1340000
SMAD4   1340000 perm   1152 sec   (1164 perm/sec)   p_kst 2.633657e-02   p_cons 6.947761e-04   p_joint 2.029851e-04

Joint ci ratio: 2.367917e-01	ci left: 1.789453e-04	ci right 2.276858e-04	k: 273	n:1350000
Cons ci ratio: 1.280163e-01	ci left: 6.496357e-04	ci right 7.391955e-04	k: 936	n:1350000
KS ci ratio: 2.050906e-02	ci left: 2.607787e-02	ci right 2.661898e-02	k: 35569	n:1350000
SMAD4   1350000 perm   1166 sec   (1158 perm/sec)   p_kst 2.634741e-02   p_cons 6.933333e-04   p_joint 2.022222e-04

Joint ci ratio: 2.359322e-01	ci left: 1.790130e-04	ci right 2.275691e-04	k: 275	n:1360000
Cons ci ratio: 1.275408e-01	ci left: 6.498415e-04	ci right 7.390718e-04	k: 943	n:1360000
KS ci ratio: 2.042840e-02	ci left: 2.609169e-02	ci right 2.663092e-02	k: 35850	n:1360000
SMAD4   1360000 perm   1180 sec   (1152 perm/sec)   p_kst 2.636029e-02   p_cons 6.933824e-04   p_joint 2.022059e-04

Joint ci ratio: 2.346603e-01	ci left: 1.797670e-04	ci right 2.282267e-04	k: 278	n:1370000
Cons ci ratio: 1.270705e-01	ci left: 6.500449e-04	ci right 7.389492e-04	k: 950	n:1370000
KS ci ratio: 2.035735e-02	ci left: 2.608351e-02	ci right 2.662068e-02	k: 36101	n:1370000
SMAD4   1370000 perm   1195 sec   (1147 perm/sec)   p_kst 2.635109e-02   p_cons 6.934307e-04   p_joint 2.029197e-04

Joint ci ratio: 2.342410e-01	ci left: 1.791464e-04	ci right 2.273400e-04	k: 279	n:1380000
Cons ci ratio: 1.267379e-01	ci left: 6.488426e-04	ci right 7.373327e-04	k: 955	n:1380000
KS ci ratio: 2.028533e-02	ci left: 2.607979e-02	ci right 2.661496e-02	k: 36358	n:1380000
SMAD4   1380000 perm   1209 sec   (1141 perm/sec)   p_kst 2.634638e-02   p_cons 6.920290e-04   p_joint 2.021739e-04

Joint ci ratio: 2.338239e-01	ci left: 1.785349e-04	ci right 2.264660e-04	k: 280	n:1390000
Cons ci ratio: 1.260801e-01	ci left: 6.511414e-04	ci right 7.394497e-04	k: 965	n:1390000
KS ci ratio: 2.021406e-02	ci left: 2.607612e-02	ci right 2.660931e-02	k: 36615	n:1390000
SMAD4   1390000 perm   1224 sec   (1136 perm/sec)   p_kst 2.634173e-02   p_cons 6.942446e-04   p_joint 2.014388e-04

Joint ci ratio: 2.329962e-01	ci left: 1.786047e-04	ci right 2.263603e-04	k: 282	n:1400000
Cons ci ratio: 1.253681e-01	ci left: 6.541005e-04	ci right 7.422719e-04	k: 976	n:1400000
KS ci ratio: 2.014607e-02	ci left: 2.606611e-02	ci right 2.659728e-02	k: 36863	n:1400000
SMAD4   1400000 perm   1238 sec   (1130 perm/sec)   p_kst 2.633071e-02   p_cons 6.971429e-04   p_joint 2.014286e-04

Joint ci ratio: 2.317709e-01	ci left: 1.793418e-04	ci right 2.270062e-04	k: 285	n:1410000
Cons ci ratio: 1.249849e-01	ci left: 6.535836e-04	ci right 7.413961e-04	k: 982	n:1410000
KS ci ratio: 2.007431e-02	ci left: 2.606753e-02	ci right 2.659682e-02	k: 37127	n:1410000
SMAD4   1410000 perm   1253 sec   (1125 perm/sec)   p_kst 2.633121e-02   p_cons 6.964539e-04   p_joint 2.021277e-04

Joint ci ratio: 2.309647e-01	ci left: 1.794056e-04	ci right 2.268975e-04	k: 287	n:1420000
Cons ci ratio: 1.246053e-01	ci left: 6.530743e-04	ci right 7.405322e-04	k: 988	n:1420000
KS ci ratio: 1.999892e-02	ci left: 2.608016e-02	ci right 2.660769e-02	k: 37407	n:1420000
SMAD4   1420000 perm   1268 sec   (1120 perm/sec)   p_kst 2.634296e-02   p_cons 6.957746e-04   p_joint 2.021127e-04

Joint ci ratio: 2.301669e-01	ci left: 1.794688e-04	ci right 2.267901e-04	k: 289	n:1430000
Cons ci ratio: 1.238559e-01	ci left: 6.566383e-04	ci right 7.440058e-04	k: 1000	n:1430000
KS ci ratio: 1.992437e-02	ci left: 2.609261e-02	ci right 2.661840e-02	k: 37687	n:1430000
SMAD4   1430000 perm   1283 sec   (1114 perm/sec)   p_kst 2.635455e-02   p_cons 6.993007e-04   p_joint 2.020979e-04

Joint ci ratio: 2.293773e-01	ci left: 1.795315e-04	ci right 2.266838e-04	k: 291	n:1440000
Cons ci ratio: 1.231808e-01	ci left: 6.594812e-04	ci right 7.467139e-04	k: 1011	n:1440000
KS ci ratio: 1.985791e-02	ci left: 2.608623e-02	ci right 2.661012e-02	k: 37940	n:1440000
SMAD4   1440000 perm   1298 sec   (1109 perm/sec)   p_kst 2.634722e-02   p_cons 7.020833e-04   p_joint 2.020833e-04

Joint ci ratio: 2.285958e-01	ci left: 1.795935e-04	ci right 2.265788e-04	k: 293	n:1450000
Cons ci ratio: 1.229988e-01	ci left: 6.569383e-04	ci right 7.436968e-04	k: 1014	n:1450000
KS ci ratio: 1.979104e-02	ci left: 2.608269e-02	ci right 2.660473e-02	k: 38197	n:1450000
SMAD4   1450000 perm   1314 sec   (1104 perm/sec)   p_kst 2.634276e-02   p_cons 6.993103e-04   p_joint 2.020690e-04

Joint ci ratio: 2.266762e-01	ci left: 1.815928e-04	ci right 2.286465e-04	k: 298	n:1460000
Cons ci ratio: 1.225768e-01	ci left: 6.570860e-04	ci right 7.435447e-04	k: 1021	n:1460000
KS ci ratio: 1.971378e-02	ci left: 2.610782e-02	ci right 2.662830e-02	k: 38496	n:1460000
SMAD4   1460000 perm   1329 sec   (1099 perm/sec)   p_kst 2.636712e-02   p_cons 6.993151e-04   p_joint 2.041096e-04

Joint ci ratio: 2.255474e-01	ci left: 1.822828e-04	ci right 2.292472e-04	k: 301	n:1470000
Cons ci ratio: 1.222782e-01	ci left: 6.559132e-04	ci right 7.419921e-04	k: 1026	n:1470000
KS ci ratio: 1.964393e-02	ci left: 2.611570e-02	ci right 2.663447e-02	k: 38770	n:1470000
SMAD4   1470000 perm   1344 sec   (1094 perm/sec)   p_kst 2.637415e-02   p_cons 6.979592e-04   p_joint 2.047619e-04

Joint ci ratio: 2.244353e-01	ci left: 1.829639e-04	ci right 2.298393e-04	k: 304	n:1480000
Cons ci ratio: 1.218636e-01	ci left: 6.560666e-04	ci right 7.418527e-04	k: 1033	n:1480000
KS ci ratio: 1.957764e-02	ci left: 2.611607e-02	ci right 2.663308e-02	k: 39033	n:1480000
SMAD4   1480000 perm   1360 sec   (1088 perm/sec)   p_kst 2.637365e-02   p_cons 6.979730e-04   p_joint 2.054054e-04

Joint ci ratio: 2.237031e-01	ci left: 1.830029e-04	ci right 2.297143e-04	k: 306	n:1490000
Cons ci ratio: 1.213366e-01	ci left: 6.575201e-04	ci right 7.430977e-04	k: 1042	n:1490000
KS ci ratio: 1.951560e-02	ci left: 2.610709e-02	ci right 2.662227e-02	k: 39282	n:1490000
SMAD4   1490000 perm   1375 sec   (1084 perm/sec)   p_kst 2.636376e-02   p_cons 6.993289e-04   p_joint 2.053691e-04

Joint ci ratio: 2.229780e-01	ci left: 1.830416e-04	ci right 2.295907e-04	k: 308	n:1500000
Cons ci ratio: 1.210469e-01	ci left: 6.563689e-04	ci right 7.415781e-04	k: 1047	n:1500000
KS ci ratio: 1.944656e-02	ci left: 2.611814e-02	ci right 2.663169e-02	k: 39561	n:1500000
SMAD4   1500000 perm   1391 sec   (1079 perm/sec)   p_kst 2.637400e-02   p_cons 6.980000e-04   p_joint 2.053333e-04

Joint ci ratio: 2.215485e-01	ci left: 1.843310e-04	ci right 2.308664e-04	k: 312	n:1510000
Cons ci ratio: 1.205874e-01	ci left: 6.571600e-04	ci right 7.421250e-04	k: 1055	n:1510000
KS ci ratio: 1.938625e-02	ci left: 2.610795e-02	ci right 2.661969e-02	k: 39808	n:1510000
SMAD4   1510000 perm   1406 sec   (1074 perm/sec)   p_kst 2.636291e-02   p_cons 6.986755e-04   p_joint 2.066225e-04

Joint ci ratio: 2.204942e-01	ci left: 1.849827e-04	ci right 2.314303e-04	k: 315	n:1520000
Cons ci ratio: 1.203030e-01	ci left: 6.560269e-04	ci right 7.406311e-04	k: 1060	n:1520000
KS ci ratio: 1.931906e-02	ci left: 2.611755e-02	ci right 2.662768e-02	k: 40085	n:1520000
SMAD4   1520000 perm   1422 sec   (1069 perm/sec)   p_kst 2.637171e-02   p_cons 6.973684e-04   p_joint 2.072368e-04

Joint ci ratio: 2.201463e-01	ci left: 1.843912e-04	ci right 2.306073e-04	k: 316	n:1530000
Cons ci ratio: 1.198520e-01	ci left: 6.568108e-04	ci right 7.411761e-04	k: 1068	n:1530000
KS ci ratio: 1.925796e-02	ci left: 2.611271e-02	ci right 2.662111e-02	k: 40340	n:1530000
SMAD4   1530000 perm   1438 sec   (1064 perm/sec)   p_kst 2.636601e-02   p_cons 6.980392e-04   p_joint 2.065359e-04

Joint ci ratio: 2.191118e-01	ci left: 1.850348e-04	ci right 2.311649e-04	k: 319	n:1540000
Cons ci ratio: 1.195171e-01	ci left: 6.563253e-04	ci right 7.403760e-04	k: 1074	n:1540000
KS ci ratio: 1.919598e-02	ci left: 2.611181e-02	ci right 2.661855e-02	k: 40601	n:1540000
SMAD4   1540000 perm   1454 sec   (1059 perm/sec)   p_kst 2.636429e-02   p_cons 6.974026e-04   p_joint 2.071429e-04

Joint ci ratio: 2.191120e-01	ci left: 1.838410e-04	ci right 2.296735e-04	k: 319	n:1550000
Cons ci ratio: 1.193508e-01	ci left: 6.539686e-04	ci right 7.375927e-04	k: 1077	n:1550000
KS ci ratio: 1.913724e-02	ci left: 2.610386e-02	ci right 2.660888e-02	k: 40851	n:1550000
SMAD4   1550000 perm   1470 sec   (1054 perm/sec)   p_kst 2.635548e-02   p_cons 6.948387e-04   p_joint 2.058065e-04

Joint ci ratio: 2.180920e-01	ci left: 1.844803e-04	ci right 2.302295e-04	k: 322	n:1560000
Cons ci ratio: 1.190201e-01	ci left: 6.535079e-04	ci right 7.368253e-04	k: 1083	n:1560000
KS ci ratio: 1.907094e-02	ci left: 2.611771e-02	ci right 2.662123e-02	k: 41135	n:1560000
SMAD4   1560000 perm   1486 sec   (1049 perm/sec)   p_kst 2.636859e-02   p_cons 6.942308e-04   p_joint 2.064103e-04

Joint ci ratio: 2.170861e-01	ci left: 1.851120e-04	ci right 2.307778e-04	k: 325	n:1570000
Cons ci ratio: 1.183126e-01	ci left: 6.573800e-04	ci right 7.406580e-04	k: 1096	n:1570000
KS ci ratio: 1.900343e-02	ci left: 2.613646e-02	ci right 2.663853e-02	k: 41427	n:1570000
SMAD4   1570000 perm   1503 sec   (1045 perm/sec)   p_kst 2.638662e-02   p_cons 6.980892e-04   p_joint 2.070064e-04

Joint ci ratio: 2.164233e-01	ci left: 1.851375e-04	ci right 2.306516e-04	k: 327	n:1580000
Cons ci ratio: 1.179369e-01	ci left: 6.575189e-04	ci right 7.405315e-04	k: 1103	n:1580000
KS ci ratio: 1.894597e-02	ci left: 2.612978e-02	ci right 2.663019e-02	k: 41679	n:1580000
SMAD4   1580000 perm   1519 sec   (1040 perm/sec)   p_kst 2.637911e-02   p_cons 6.981013e-04   p_joint 2.069620e-04

Joint ci ratio: 2.157664e-01	ci left: 1.851629e-04	ci right 2.305268e-04	k: 329	n:1590000
Cons ci ratio: 1.171435e-01	ci left: 6.625402e-04	ci right 7.455852e-04	k: 1118	n:1590000
KS ci ratio: 1.888625e-02	ci left: 2.613069e-02	ci right 2.662953e-02	k: 41943	n:1590000
SMAD4   1590000 perm   1536 sec   (1035 perm/sec)   p_kst 2.637925e-02   p_cons 7.031447e-04   p_joint 2.069182e-04

Joint ci ratio: 2.154403e-01	ci left: 1.845969e-04	ci right 2.297448e-04	k: 330	n:1600000
Cons ci ratio: 1.168307e-01	ci left: 6.620396e-04	ci right 7.447850e-04	k: 1124	n:1600000
KS ci ratio: 1.882526e-02	ci left: 2.613658e-02	ci right 2.663389e-02	k: 42215	n:1600000
SMAD4   1600000 perm   1553 sec   (1030 perm/sec)   p_kst 2.638438e-02   p_cons 7.025000e-04   p_joint 2.062500e-04

Joint ci ratio: 2.187712e-01	ci left: 1.775768e-04	ci right 2.217695e-04	k: 320	n:1610000
Cons ci ratio: 1.165204e-01	ci left: 6.615455e-04	ci right 7.439944e-04	k: 1130	n:1610000
KS ci ratio: 1.876645e-02	ci left: 2.613806e-02	ci right 2.663383e-02	k: 42480	n:1610000
SMAD4   1610000 perm   1569 sec   (1026 perm/sec)   p_kst 2.638509e-02   p_cons 7.018634e-04   p_joint 1.987578e-04

Joint ci ratio: 2.184313e-01	ci left: 1.770641e-04	ci right 2.210516e-04	k: 321	n:1620000
Cons ci ratio: 1.161105e-01	ci left: 6.622565e-04	ci right 7.444837e-04	k: 1138	n:1620000
KS ci ratio: 1.870795e-02	ci left: 2.614014e-02	ci right 2.663439e-02	k: 42746	n:1620000
SMAD4   1620000 perm   1586 sec   (1021 perm/sec)   p_kst 2.638642e-02   p_cons 7.024691e-04   p_joint 1.981481e-04

Joint ci ratio: 2.201477e-01	ci left: 1.730788e-04	ci right 2.164598e-04	k: 316	n:1630000
Cons ci ratio: 1.158059e-01	ci left: 6.617678e-04	ci right 7.437040e-04	k: 1144	n:1630000
KS ci ratio: 1.865201e-02	ci left: 2.613670e-02	ci right 2.662940e-02	k: 43003	n:1630000
SMAD4   1630000 perm   1603 sec   (1017 perm/sec)   p_kst 2.638221e-02   p_cons 7.018405e-04   p_joint 1.938650e-04

Joint ci ratio: 2.198013e-01	ci left: 1.725996e-04	ci right 2.157832e-04	k: 317	n:1640000
Cons ci ratio: 1.154535e-01	ci left: 6.618775e-04	ci right 7.435609e-04	k: 1151	n:1640000
KS ci ratio: 1.859347e-02	ci left: 2.614181e-02	ci right 2.663304e-02	k: 43274	n:1640000
SMAD4   1640000 perm   1620 sec   (1012 perm/sec)   p_kst 2.638659e-02   p_cons 7.018293e-04   p_joint 1.932927e-04

Joint ci ratio: 2.198014e-01	ci left: 1.715535e-04	ci right 2.144755e-04	k: 317	n:1650000
Cons ci ratio: 1.147580e-01	ci left: 6.661067e-04	ci right 7.477834e-04	k: 1165	n:1650000
KS ci ratio: 1.853724e-02	ci left: 2.614203e-02	ci right 2.663176e-02	k: 43537	n:1650000
SMAD4   1650000 perm   1637 sec   (1008 perm/sec)   p_kst 2.638606e-02   p_cons 7.060606e-04   p_joint 1.921212e-04

Joint ci ratio: 2.198016e-01	ci left: 1.705200e-04	ci right 2.131835e-04	k: 317	n:1660000
Cons ci ratio: 1.145618e-01	ci left: 6.644345e-04	ci right 7.457575e-04	k: 1169	n:1660000
KS ci ratio: 1.847652e-02	ci left: 2.615604e-02	ci right 2.664441e-02	k: 43823	n:1660000
SMAD4   1660000 perm   1655 sec   (1003 perm/sec)   p_kst 2.639940e-02   p_cons 7.042169e-04   p_joint 1.909639e-04

Joint ci ratio: 2.198017e-01	ci left: 1.694989e-04	ci right 2.119069e-04	k: 317	n:1670000
Cons ci ratio: 1.144642e-01	ci left: 6.616191e-04	ci right 7.425238e-04	k: 1171	n:1670000
KS ci ratio: 1.842069e-02	ci left: 2.615796e-02	ci right 2.664488e-02	k: 44089	n:1670000
SMAD4   1670000 perm   1672 sec   (999 perm/sec)   p_kst 2.640060e-02   p_cons 7.011976e-04   p_joint 1.898204e-04

Joint ci ratio: 2.184321e-01	ci left: 1.707403e-04	ci right 2.131570e-04	k: 321	n:1680000
Cons ci ratio: 1.141724e-01	ci left: 6.611502e-04	ci right 7.417776e-04	k: 1177	n:1680000
KS ci ratio: 1.836409e-02	ci left: 2.616342e-02	ci right 2.664893e-02	k: 44361	n:1680000
SMAD4   1680000 perm   1689 sec   (995 perm/sec)   p_kst 2.640536e-02   p_cons 7.005952e-04   p_joint 1.910714e-04

Joint ci ratio: 2.180937e-01	ci left: 1.702894e-04	ci right 2.125197e-04	k: 322	n:1690000
Cons ci ratio: 1.138346e-01	ci left: 6.612620e-04	ci right 7.416484e-04	k: 1184	n:1690000
KS ci ratio: 1.831243e-02	ci left: 2.615645e-02	ci right 2.664044e-02	k: 44612	n:1690000
SMAD4   1690000 perm   1707 sec   (990 perm/sec)   p_kst 2.639763e-02   p_cons 7.005917e-04   p_joint 1.905325e-04

Joint ci ratio: 2.177570e-01	ci left: 1.698438e-04	ci right 2.118899e-04	k: 323	n:1700000
Cons ci ratio: 1.135476e-01	ci left: 6.608012e-04	ci right 7.409155e-04	k: 1190	n:1700000
KS ci ratio: 1.826162e-02	ci left: 2.614839e-02	ci right 2.663088e-02	k: 44861	n:1700000
SMAD4   1700000 perm   1724 sec   (986 perm/sec)   p_kst 2.638882e-02   p_cons 7.000000e-04   p_joint 1.900000e-04

Joint ci ratio: 2.170880e-01	ci left: 1.699565e-04	ci right 2.118839e-04	k: 325	n:1710000
Cons ci ratio: 1.132627e-01	ci left: 6.603461e-04	ci right 7.401910e-04	k: 1196	n:1710000
KS ci ratio: 1.820688e-02	ci left: 2.615265e-02	ci right 2.663375e-02	k: 45131	n:1710000
SMAD4   1710000 perm   1742 sec   (982 perm/sec)   p_kst 2.639240e-02   p_cons 6.994152e-04   p_joint 1.900585e-04

Joint ci ratio: 2.530172e-01	ci left: 1.218950e-04	ci right 1.577307e-04	k: 239	n:1720000
Cons ci ratio: 1.131211e-01	ci left: 6.582017e-04	ci right 7.376811e-04	k: 1199	n:1720000
KS ci ratio: 1.815797e-02	ci left: 2.614181e-02	ci right 2.662141e-02	k: 45375	n:1720000
SMAD4   1720000 perm   1760 sec   (977 perm/sec)   p_kst 2.638081e-02   p_cons 6.970930e-04   p_joint 1.389535e-04

Joint ci ratio: 2.519694e-01	ci left: 1.222733e-04	ci right 1.580481e-04	k: 241	n:1730000
Cons ci ratio: 1.126526e-01	ci left: 6.600142e-04	ci right 7.393605e-04	k: 1209	n:1730000
KS ci ratio: 1.810843e-02	ci left: 2.613398e-02	ci right 2.661212e-02	k: 45624	n:1730000
SMAD4   1730000 perm   1777 sec   (973 perm/sec)   p_kst 2.637225e-02   p_cons 6.988439e-04   p_joint 1.393064e-04

Joint ci ratio: 2.509346e-01	ci left: 1.226476e-04	ci right 1.583614e-04	k: 243	n:1740000
Cons ci ratio: 1.122359e-01	ci left: 6.612480e-04	ci right 7.404291e-04	k: 1218	n:1740000
KS ci ratio: 1.805425e-02	ci left: 2.614054e-02	ci right 2.661736e-02	k: 45898	n:1740000
SMAD4   1740000 perm   1795 sec   (969 perm/sec)   p_kst 2.637816e-02   p_cons 7.000000e-04   p_joint 1.396552e-04

Joint ci ratio: 2.504220e-01	ci left: 1.224823e-04	ci right 1.580638e-04	k: 244	n:1750000
Cons ci ratio: 1.119151e-01	ci left: 6.613573e-04	ci right 7.403102e-04	k: 1225	n:1750000
KS ci ratio: 1.800415e-02	ci left: 2.613680e-02	ci right 2.661220e-02	k: 46154	n:1750000
SMAD4   1750000 perm   1813 sec   (965 perm/sec)   p_kst 2.637371e-02   p_cons 7.000000e-04   p_joint 1.394286e-04

Joint ci ratio: 2.494061e-01	ci left: 1.228516e-04	ci right 1.583731e-04	k: 246	n:1760000
Cons ci ratio: 1.114162e-01	ci left: 6.636751e-04	ci right 7.425283e-04	k: 1236	n:1760000
KS ci ratio: 1.795228e-02	ci left: 2.613931e-02	ci right 2.661338e-02	k: 46421	n:1760000
SMAD4   1760000 perm   1831 sec   (961 perm/sec)   p_kst 2.637557e-02   p_cons 7.022727e-04   p_joint 1.397727e-04

Joint ci ratio: 2.484024e-01	ci left: 1.232170e-04	ci right 1.586786e-04	k: 248	n:1770000
Cons ci ratio: 1.111918e-01	ci left: 6.626717e-04	ci right 7.412367e-04	k: 1241	n:1770000
KS ci ratio: 1.790086e-02	ci left: 2.614181e-02	ci right 2.661455e-02	k: 46688	n:1770000
SMAD4   1770000 perm   1849 sec   (957 perm/sec)   p_kst 2.637740e-02   p_cons 7.011299e-04   p_joint 1.401130e-04

Joint ci ratio: 1.874960e-01	ci left: 2.224912e-04	ci right 2.690478e-04	k: 436	n:1780000
Cons ci ratio: 1.108354e-01	ci left: 6.633184e-04	ci right 7.416916e-04	k: 1249	n:1780000
KS ci ratio: 1.785280e-02	ci left: 2.613588e-02	ci right 2.660723e-02	k: 46940	n:1780000
SMAD4   1780000 perm   1867 sec   (953 perm/sec)   p_kst 2.637079e-02   p_cons 7.016854e-04   p_joint 2.449438e-04

Joint ci ratio: 1.870684e-01	ci left: 2.223132e-04	ci right 2.687144e-04	k: 438	n:1790000
Cons ci ratio: 1.104384e-01	ci left: 6.645016e-04	ci right 7.427150e-04	k: 1258	n:1790000
KS ci ratio: 1.780049e-02	ci left: 2.614337e-02	ci right 2.661347e-02	k: 47216	n:1790000
SMAD4   1790000 perm   1885 sec   (950 perm/sec)   p_kst 2.637765e-02   p_cons 7.027933e-04   p_joint 2.446927e-04

Joint ci ratio: 1.866437e-01	ci left: 2.221372e-04	ci right 2.683846e-04	k: 440	n:1800000
Cons ci ratio: 1.101763e-01	ci left: 6.640513e-04	ci right 7.420141e-04	k: 1264	n:1800000
KS ci ratio: 1.774633e-02	ci left: 2.615742e-02	ci right 2.662632e-02	k: 47504	n:1800000
SMAD4   1800000 perm   1903 sec   (946 perm/sec)   p_kst 2.639111e-02   p_cons 7.022222e-04   p_joint 2.444444e-04

Joint ci ratio: 1.858029e-01	ci left: 2.230169e-04	ci right 2.692146e-04	k: 444	n:1810000
Cons ci ratio: 1.099159e-01	ci left: 6.636061e-04	ci right 7.413207e-04	k: 1270	n:1810000
KS ci ratio: 1.769475e-02	ci left: 2.616527e-02	ci right 2.663293e-02	k: 47781	n:1810000
SMAD4   1810000 perm   1921 sec   (942 perm/sec)   p_kst 2.639834e-02   p_cons 7.016575e-04   p_joint 2.453039e-04

Joint ci ratio: 1.877114e-01	ci left: 2.170776e-04	ci right 2.625596e-04	k: 435	n:1820000
Cons ci ratio: 1.097866e-01	ci left: 6.615630e-04	ci right 7.389412e-04	k: 1273	n:1820000
KS ci ratio: 1.764720e-02	ci left: 2.616264e-02	ci right 2.662898e-02	k: 48039	n:1820000
SMAD4   1820000 perm   1940 sec   (938 perm/sec)   p_kst 2.639505e-02   p_cons 6.994505e-04   p_joint 2.390110e-04

Joint ci ratio: 1.883608e-01	ci left: 2.143291e-04	ci right 2.594084e-04	k: 432	n:1830000
Cons ci ratio: 1.093581e-01	ci left: 6.632626e-04	ci right 7.405174e-04	k: 1283	n:1830000
KS ci ratio: 1.759872e-02	ci left: 2.616384e-02	ci right 2.662892e-02	k: 48304	n:1830000
SMAD4   1830000 perm   1958 sec   (934 perm/sec)   p_kst 2.639563e-02   p_cons 7.010929e-04   p_joint 2.360656e-04

Joint ci ratio: 1.577868e-01	ci left: 3.088675e-04	ci right 3.622910e-04	k: 616	n:1840000
Cons ci ratio: 1.090190e-01	ci left: 6.638870e-04	ci right 7.409594e-04	k: 1291	n:1840000
KS ci ratio: 1.754897e-02	ci left: 2.616991e-02	ci right 2.663376e-02	k: 48578	n:1840000
SMAD4   1840000 perm   1977 sec   (931 perm/sec)   p_kst 2.640109e-02   p_cons 7.016304e-04   p_joint 3.347826e-04

Joint ci ratio: 1.575317e-01	ci left: 3.082363e-04	ci right 3.614564e-04	k: 618	n:1850000
Cons ci ratio: 1.087249e-01	ci left: 6.639792e-04	ci right 7.408410e-04	k: 1298	n:1850000
KS ci ratio: 1.750645e-02	ci left: 2.615599e-02	ci right 2.661846e-02	k: 48815	n:1850000
SMAD4   1850000 perm   1996 sec   (927 perm/sec)   p_kst 2.638649e-02   p_cons 7.016216e-04   p_joint 3.340541e-04

Joint ci ratio: 1.566483e-01	ci left: 3.101947e-04	ci right 3.634243e-04	k: 625	n:1860000
Cons ci ratio: 1.085579e-01	ci left: 6.625015e-04	ci right 7.390669e-04	k: 1302	n:1860000
KS ci ratio: 1.745693e-02	ci left: 2.616364e-02	ci right 2.662493e-02	k: 49092	n:1860000
SMAD4   1860000 perm   2014 sec   (923 perm/sec)   p_kst 2.639355e-02   p_cons 7.000000e-04   p_joint 3.360215e-04

Joint ci ratio: 1.562743e-01	ci left: 3.100774e-04	ci right 3.631479e-04	k: 628	n:1870000
Cons ci ratio: 1.082675e-01	ci left: 6.626005e-04	ci right 7.389595e-04	k: 1309	n:1870000
KS ci ratio: 1.741181e-02	ci left: 2.615950e-02	ci right 2.661951e-02	k: 49347	n:1870000
SMAD4   1870000 perm   2033 sec   (920 perm/sec)   p_kst 2.638877e-02   p_cons 7.000000e-04   p_joint 3.358289e-04

Joint ci ratio: 1.566486e-01	ci left: 3.068947e-04	ci right 3.595581e-04	k: 625	n:1880000
Cons ci ratio: 1.079384e-01	ci left: 6.632163e-04	ci right 7.393991e-04	k: 1317	n:1880000
KS ci ratio: 1.736344e-02	ci left: 2.616600e-02	ci right 2.662483e-02	k: 49622	n:1880000
SMAD4   1880000 perm   2053 sec   (916 perm/sec)   p_kst 2.639468e-02   p_cons 7.005319e-04   p_joint 3.324468e-04

Joint ci ratio: 1.556569e-01	ci left: 3.093384e-04	ci right 3.620537e-04	k: 633	n:1890000
Cons ci ratio: 1.074098e-01	ci left: 6.664004e-04	ci right 7.425504e-04	k: 1330	n:1890000
KS ci ratio: 1.731619e-02	ci left: 2.617032e-02	ci right 2.662796e-02	k: 49893	n:1890000
SMAD4   1890000 perm   2072 sec   (912 perm/sec)   p_kst 2.639841e-02   p_cons 7.037037e-04   p_joint 3.349206e-04

Joint ci ratio: 1.551682e-01	ci left: 3.097337e-04	ci right 3.623353e-04	k: 637	n:1900000
Cons ci ratio: 1.072489e-01	ci left: 6.649417e-04	ci right 7.408040e-04	k: 1334	n:1900000
KS ci ratio: 1.727073e-02	ci left: 2.617040e-02	ci right 2.662683e-02	k: 50156	n:1900000
SMAD4   1900000 perm   2092 sec   (908 perm/sec)   p_kst 2.639789e-02   p_cons 7.021053e-04   p_joint 3.352632e-04

Joint ci ratio: 1.546840e-01	ci left: 3.101251e-04	ci right 3.626136e-04	k: 641	n:1910000
Cons ci ratio: 1.070886e-01	ci left: 6.634985e-04	ci right 7.390758e-04	k: 1338	n:1910000
KS ci ratio: 1.722599e-02	ci left: 2.616944e-02	ci right 2.662467e-02	k: 50417	n:1910000
SMAD4   1910000 perm   2111 sec   (905 perm/sec)   p_kst 2.639634e-02   p_cons 7.005236e-04   p_joint 3.356021e-04

Joint ci ratio: 1.542043e-01	ci left: 3.105127e-04	ci right 3.628887e-04	k: 645	n:1920000
Cons ci ratio: 1.068098e-01	ci left: 6.635910e-04	ci right 7.389698e-04	k: 1345	n:1920000
KS ci ratio: 1.717915e-02	ci left: 2.617576e-02	ci right 2.662984e-02	k: 50692	n:1920000
SMAD4   1920000 perm   2130 sec   (901 perm/sec)   p_kst 2.640208e-02   p_cons 7.005208e-04   p_joint 3.359375e-04

Joint ci ratio: 1.533755e-01	ci left: 3.123912e-04	ci right 3.647749e-04	k: 652	n:1930000
Cons ci ratio: 1.064544e-01	ci left: 6.646916e-04	ci right 7.399285e-04	k: 1354	n:1930000
KS ci ratio: 1.713494e-02	ci left: 2.617530e-02	ci right 2.662820e-02	k: 50954	n:1930000
SMAD4   1930000 perm   2150 sec   (898 perm/sec)   p_kst 2.640104e-02   p_cons 7.015544e-04   p_joint 3.378238e-04

Joint ci ratio: 1.530244e-01	ci left: 3.122680e-04	ci right 3.645002e-04	k: 655	n:1940000
Cons ci ratio: 1.061026e-01	ci left: 6.657813e-04	ci right 7.408768e-04	k: 1363	n:1940000
KS ci ratio: 1.709003e-02	ci left: 2.617793e-02	ci right 2.662967e-02	k: 51222	n:1940000
SMAD4   1940000 perm   2169 sec   (894 perm/sec)   p_kst 2.640309e-02   p_cons 7.025773e-04   p_joint 3.376289e-04

Joint ci ratio: 1.525599e-01	ci left: 3.126395e-04	ci right 3.647606e-04	k: 659	n:1950000
Cons ci ratio: 1.059087e-01	ci left: 6.648631e-04	ci right 7.397095e-04	k: 1368	n:1950000
KS ci ratio: 1.704056e-02	ci left: 2.619534e-02	ci right 2.664606e-02	k: 51519	n:1950000
SMAD4   1950000 perm   2189 sec   (891 perm/sec)   p_kst 2.642000e-02   p_cons 7.015385e-04   p_joint 3.379487e-04

Joint ci ratio: 1.520997e-01	ci left: 3.130075e-04	ci right 3.650181e-04	k: 663	n:1960000
Cons ci ratio: 1.056774e-01	ci left: 6.644512e-04	ci right 7.390777e-04	k: 1374	n:1960000
KS ci ratio: 1.699942e-02	ci left: 2.618870e-02	ci right 2.663821e-02	k: 51769	n:1960000
SMAD4   1960000 perm   2208 sec   (888 perm/sec)   p_kst 2.641276e-02   p_cons 7.010204e-04   p_joint 3.382653e-04

Joint ci ratio: 1.519854e-01	ci left: 3.119069e-04	ci right 3.636922e-04	k: 664	n:1970000
Cons ci ratio: 1.055241e-01	ci left: 6.630551e-04	ci right 7.374101e-04	k: 1378	n:1970000
KS ci ratio: 1.695089e-02	ci left: 2.620538e-02	ci right 2.665388e-02	k: 52065	n:1970000
SMAD4   1970000 perm   2228 sec   (884 perm/sec)   p_kst 2.642893e-02   p_cons 6.994924e-04   p_joint 3.370558e-04

Joint ci ratio: 1.517574e-01	ci left: 3.113033e-04	ci right 3.629038e-04	k: 666	n:1980000
Cons ci ratio: 1.052193e-01	ci left: 6.636403e-04	ci right 7.378327e-04	k: 1386	n:1980000
KS ci ratio: 1.690941e-02	ci left: 2.620178e-02	ci right 2.664911e-02	k: 52321	n:1980000
SMAD4   1980000 perm   2248 sec   (881 perm/sec)   p_kst 2.642475e-02   p_cons 7.000000e-04   p_joint 3.363636e-04

Joint ci ratio: 1.511917e-01	ci left: 3.121563e-04	ci right 3.636879e-04	k: 671	n:1990000
Cons ci ratio: 1.048796e-01	ci left: 6.647092e-04	ci right 7.387663e-04	k: 1395	n:1990000
KS ci ratio: 1.686280e-02	ci left: 2.621472e-02	ci right 2.666103e-02	k: 52610	n:1990000
SMAD4   1990000 perm   2267 sec   (878 perm/sec)   p_kst 2.643719e-02   p_cons 7.010050e-04   p_joint 3.371859e-04

Joint ci ratio: 1.507437e-01	ci left: 3.125200e-04	ci right 3.639449e-04	k: 675	n:2000000
Cons ci ratio: 1.044687e-01	ci left: 6.667417e-04	ci right 7.407164e-04	k: 1406	n:2000000
KS ci ratio: 1.682293e-02	ci left: 2.620812e-02	ci right 2.665325e-02	k: 52860	n:2000000
SMAD4   2000000 perm   2288 sec   (874 perm/sec)   p_kst 2.643000e-02   p_cons 7.030000e-04   p_joint 3.375000e-04

Joint ci ratio: 1.509674e-01	ci left: 3.100077e-04	ci right 3.611017e-04	k: 673	n:2010000
Cons ci ratio: 1.039160e-01	ci left: 6.706929e-04	ci right 7.446883e-04	k: 1421	n:2010000
KS ci ratio: 1.678254e-02	ci left: 2.620407e-02	ci right 2.664805e-02	k: 53115	n:2010000
SMAD4   2010000 perm   2308 sec   (871 perm/sec)   p_kst 2.642537e-02   p_cons 7.069652e-04   p_joint 3.348259e-04

Joint ci ratio: 1.502998e-01	ci left: 3.113313e-04	ci right 3.623963e-04	k: 679	n:2020000
Cons ci ratio: 1.035163e-01	ci left: 6.726769e-04	ci right 7.465884e-04	k: 1432	n:2020000
KS ci ratio: 1.673632e-02	ci left: 2.621879e-02	ci right 2.666178e-02	k: 53408	n:2020000
SMAD4   2020000 perm   2328 sec   (868 perm/sec)   p_kst 2.643960e-02   p_cons 7.089109e-04   p_joint 3.361386e-04

Joint ci ratio: 1.531423e-01	ci left: 2.979497e-04	ci right 3.478288e-04	k: 654	n:2030000
Cons ci ratio: 1.033722e-01	ci left: 6.712827e-04	ci right 7.449320e-04	k: 1436	n:2030000
KS ci ratio: 1.668793e-02	ci left: 2.624121e-02	ci right 2.668329e-02	k: 53717	n:2030000
SMAD4   2030000 perm   2348 sec   (865 perm/sec)   p_kst 2.646158e-02   p_cons 7.073892e-04   p_joint 3.221675e-04

Joint ci ratio: 1.538489e-01	ci left: 2.936609e-04	ci right 3.430698e-04	k: 648	n:2040000
Cons ci ratio: 1.031214e-01	ci left: 6.713349e-04	ci right 7.448004e-04	k: 1443	n:2040000
KS ci ratio: 1.664724e-02	ci left: 2.624096e-02	ci right 2.668195e-02	k: 53980	n:2040000
SMAD4   2040000 perm   2368 sec   (861 perm/sec)   p_kst 2.646078e-02   p_cons 7.073529e-04   p_joint 3.176471e-04

Joint ci ratio: 1.540867e-01	ci left: 2.912904e-04	ci right 3.403832e-04	k: 646	n:2050000
Cons ci ratio: 1.028014e-01	ci left: 6.723373e-04	ci right 7.456704e-04	k: 1452	n:2050000
KS ci ratio: 1.660416e-02	ci left: 2.624898e-02	ci right 2.668895e-02	k: 54260	n:2050000
SMAD4   2050000 perm   2388 sec   (858 perm/sec)   p_kst 2.646829e-02   p_cons 7.082927e-04   p_joint 3.151220e-04

Joint ci ratio: 1.536126e-01	ci left: 2.917434e-04	ci right 3.407473e-04	k: 650	n:2060000
Cons ci ratio: 1.026251e-01	ci left: 6.714383e-04	ci right 7.445402e-04	k: 1457	n:2060000
KS ci ratio: 1.656065e-02	ci left: 2.625933e-02	ci right 2.669831e-02	k: 54545	n:2060000
SMAD4   2060000 perm   2409 sec   (855 perm/sec)   p_kst 2.647816e-02   p_cons 7.072816e-04   p_joint 3.155340e-04

Joint ci ratio: 1.530260e-01	ci left: 2.926568e-04	ci right 3.416092e-04	k: 655	n:2070000
Cons ci ratio: 1.024496e-01	ci left: 6.705482e-04	ci right 7.434208e-04	k: 1462	n:2070000
KS ci ratio: 1.652459e-02	ci left: 2.624746e-02	ci right 2.668527e-02	k: 54784	n:2070000
SMAD4   2070000 perm   2429 sec   (852 perm/sec)   p_kst 2.646570e-02   p_cons 7.062802e-04   p_joint 3.164251e-04

Joint ci ratio: 1.527933e-01	ci left: 2.921745e-04	ci right 3.409651e-04	k: 657	n:2080000
Cons ci ratio: 1.023099e-01	ci left: 6.691982e-04	ci right 7.418190e-04	k: 1466	n:2080000
KS ci ratio: 1.648538e-02	ci left: 2.624623e-02	ci right 2.668298e-02	k: 55045	n:2080000
SMAD4   2080000 perm   2450 sec   (849 perm/sec)   p_kst 2.646394e-02   p_cons 7.048077e-04   p_joint 3.158654e-04

Joint ci ratio: 1.525617e-01	ci left: 2.916969e-04	ci right 3.403272e-04	k: 659	n:2090000
Cons ci ratio: 1.022056e-01	ci left: 6.673949e-04	ci right 7.397418e-04	k: 1469	n:2090000
KS ci ratio: 1.644370e-02	ci left: 2.625359e-02	ci right 2.668935e-02	k: 55324	n:2090000
SMAD4   2090000 perm   2471 sec   (846 perm/sec)   p_kst 2.647081e-02   p_cons 7.028708e-04   p_joint 3.153110e-04

Joint ci ratio: 1.522161e-01	ci left: 2.916820e-04	ci right 3.401896e-04	k: 662	n:2100000
Cons ci ratio: 1.019631e-01	ci left: 6.674651e-04	ci right 7.396376e-04	k: 1476	n:2100000
KS ci ratio: 1.639992e-02	ci left: 2.626848e-02	ci right 2.670331e-02	k: 55619	n:2100000
SMAD4   2100000 perm   2492 sec   (843 perm/sec)   p_kst 2.648524e-02   p_cons 7.028571e-04   p_joint 3.152381e-04

Joint ci ratio: 1.521015e-01	ci left: 2.907555e-04	ci right 3.390693e-04	k: 663	n:2110000
Cons ci ratio: 1.019287e-01	ci left: 6.647636e-04	ci right 7.366183e-04	k: 1477	n:2110000
KS ci ratio: 1.636505e-02	ci left: 2.625631e-02	ci right 2.669001e-02	k: 55857	n:2110000
SMAD4   2110000 perm   2512 sec   (840 perm/sec)   p_kst 2.647251e-02   p_cons 7.000000e-04   p_joint 3.142180e-04

Joint ci ratio: 1.516454e-01	ci left: 2.911991e-04	ci right 3.394284e-04	k: 667	n:2120000
Cons ci ratio: 1.015173e-01	ci left: 6.671443e-04	ci right 7.389479e-04	k: 1489	n:2120000
KS ci ratio: 1.632427e-02	ci left: 2.626353e-02	ci right 2.669625e-02	k: 56136	n:2120000
SMAD4   2120000 perm   2533 sec   (837 perm/sec)   p_kst 2.647925e-02   p_cons 7.023585e-04   p_joint 3.146226e-04

Joint ci ratio: 1.513060e-01	ci left: 2.911870e-04	ci right 3.392966e-04	k: 670	n:2130000
Cons ci ratio: 1.013814e-01	ci left: 6.658424e-04	ci right 7.374043e-04	k: 1493	n:2130000
KS ci ratio: 1.628707e-02	ci left: 2.626039e-02	ci right 2.669207e-02	k: 56393	n:2130000
SMAD4   2130000 perm   2554 sec   (834 perm/sec)   p_kst 2.647559e-02   p_cons 7.009390e-04   p_joint 3.145540e-04

Joint ci ratio: 1.507454e-01	ci left: 2.920745e-04	ci right 3.401358e-04	k: 675	n:2140000
Cons ci ratio: 1.009766e-01	ci left: 6.681966e-04	ci right 7.397077e-04	k: 1505	n:2140000
KS ci ratio: 1.624599e-02	ci left: 2.627032e-02	ci right 2.670106e-02	k: 56678	n:2140000
SMAD4   2140000 perm   2575 sec   (831 perm/sec)   p_kst 2.648505e-02   p_cons 7.032710e-04   p_joint 3.154206e-04

Joint ci ratio: 1.506341e-01	ci left: 2.911636e-04	ci right 3.390364e-04	k: 676	n:2150000
Cons ci ratio: 1.008762e-01	ci left: 6.664488e-04	ci right 7.376978e-04	k: 1508	n:2150000
KS ci ratio: 1.620916e-02	ci left: 2.626764e-02	ci right 2.669735e-02	k: 56936	n:2150000
SMAD4   2150000 perm   2597 sec   (828 perm/sec)   p_kst 2.648186e-02   p_cons 7.013953e-04   p_joint 3.144186e-04

Joint ci ratio: 1.505230e-01	ci left: 2.902611e-04	ci right 3.379472e-04	k: 677	n:2160000
Cons ci ratio: 1.005767e-01	ci left: 6.674252e-04	ci right 7.385541e-04	k: 1517	n:2160000
KS ci ratio: 1.617273e-02	ci left: 2.626453e-02	ci right 2.669322e-02	k: 57193	n:2160000
SMAD4   2160000 perm   2618 sec   (825 perm/sec)   p_kst 2.647824e-02   p_cons 7.023148e-04   p_joint 3.134259e-04

Joint ci ratio: 1.501911e-01	ci left: 2.902540e-04	ci right 3.378243e-04	k: 680	n:2170000
Cons ci ratio: 1.004445e-01	ci left: 6.661464e-04	ci right 7.370403e-04	k: 1521	n:2170000
KS ci ratio: 1.613713e-02	ci left: 2.625962e-02	ci right 2.668727e-02	k: 57446	n:2170000
SMAD4   2170000 perm   2640 sec   (822 perm/sec)   p_kst 2.647281e-02   p_cons 7.009217e-04   p_joint 3.133641e-04

Joint ci ratio: 1.499711e-01	ci left: 2.898055e-04	ci right 3.372265e-04	k: 682	n:2180000
Cons ci ratio: 1.001816e-01	ci left: 6.666684e-04	ci right 7.374212e-04	k: 1529	n:2180000
KS ci ratio: 1.610247e-02	ci left: 2.625246e-02	ci right 2.667907e-02	k: 57694	n:2180000
SMAD4   2180000 perm   2661 sec   (819 perm/sec)   p_kst 2.646514e-02   p_cons 7.013761e-04   p_joint 3.128440e-04

Joint ci ratio: 1.496428e-01	ci left: 2.898007e-04	ci right 3.371078e-04	k: 685	n:2190000
Cons ci ratio: 9.992065e-02	ci left: 6.671858e-04	ci right 7.377983e-04	k: 1537	n:2190000
KS ci ratio: 1.606690e-02	ci left: 2.624901e-02	ci right 2.667462e-02	k: 57950	n:2190000
SMAD4   2190000 perm   2683 sec   (816 perm/sec)   p_kst 2.646119e-02   p_cons 7.018265e-04   p_joint 3.127854e-04

Joint ci ratio: 1.494252e-01	ci left: 2.893585e-04	ci right 3.365186e-04	k: 687	n:2200000
Cons ci ratio: 9.962953e-02	ci left: 6.681420e-04	ci right 7.386376e-04	k: 1546	n:2200000
KS ci ratio: 1.602887e-02	ci left: 2.625420e-02	ci right 2.667887e-02	k: 58225	n:2200000
SMAD4   2200000 perm   2704 sec   (813 perm/sec)   p_kst 2.646591e-02   p_cons 7.027273e-04   p_joint 3.122727e-04

Joint ci ratio: 1.506347e-01	ci left: 2.832586e-04	ci right 3.298319e-04	k: 676	n:2210000
Cons ci ratio: 9.950104e-02	ci left: 6.668836e-04	ci right 7.371504e-04	k: 1550	n:2210000
KS ci ratio: 1.599055e-02	ci left: 2.626114e-02	ci right 2.668490e-02	k: 58504	n:2210000
SMAD4   2210000 perm   2726 sec   (811 perm/sec)   p_kst 2.647240e-02   p_cons 7.013575e-04   p_joint 3.058824e-04

Joint ci ratio: 1.504128e-01	ci left: 2.828496e-04	ci right 3.292810e-04	k: 678	n:2220000
Cons ci ratio: 9.924540e-02	ci left: 6.673936e-04	ci right 7.375230e-04	k: 1558	n:2220000
KS ci ratio: 1.595544e-02	ci left: 2.625860e-02	ci right 2.668138e-02	k: 58762	n:2220000
SMAD4   2220000 perm   2748 sec   (808 perm/sec)   p_kst 2.646937e-02   p_cons 7.018018e-04   p_joint 3.054054e-04

Joint ci ratio: 1.509699e-01	ci left: 2.794236e-04	ci right 3.254778e-04	k: 673	n:2230000
Cons ci ratio: 9.905499e-02	ci left: 6.670247e-04	ci right 7.369730e-04	k: 1564	n:2230000
KS ci ratio: 1.592041e-02	ci left: 2.625653e-02	ci right 2.667834e-02	k: 59021	n:2230000
SMAD4   2230000 perm   2770 sec   (805 perm/sec)   p_kst 2.646682e-02   p_cons 7.013453e-04   p_joint 3.017937e-04

Joint ci ratio: 1.506350e-01	ci left: 2.794649e-04	ci right 3.254145e-04	k: 676	n:2240000
Cons ci ratio: 9.886567e-02	ci left: 6.666592e-04	ci right 7.364278e-04	k: 1570	n:2240000
KS ci ratio: 1.588548e-02	ci left: 2.625492e-02	ci right 2.667577e-02	k: 59281	n:2240000
SMAD4   2240000 perm   2792 sec   (802 perm/sec)   p_kst 2.646473e-02   p_cons 7.008929e-04   p_joint 3.017857e-04

Joint ci ratio: 1.501920e-01	ci left: 2.799337e-04	ci right 3.258129e-04	k: 680	n:2250000
Cons ci ratio: 9.864615e-02	ci left: 6.667305e-04	ci right 7.363427e-04	k: 1577	n:2250000
KS ci ratio: 1.584872e-02	ci left: 2.625997e-02	ci right 2.667992e-02	k: 59556	n:2250000
SMAD4   2250000 perm   2814 sec   (799 perm/sec)   p_kst 2.646933e-02   p_cons 7.008889e-04   p_joint 3.022222e-04

Joint ci ratio: 1.500819e-01	ci left: 2.791209e-04	ci right 3.248303e-04	k: 681	n:2260000
Cons ci ratio: 9.852142e-02	ci left: 6.655067e-04	ci right 7.348981e-04	k: 1581	n:2260000
KS ci ratio: 1.581168e-02	ci left: 2.626674e-02	ci right 2.668580e-02	k: 59835	n:2260000
SMAD4   2260000 perm   2836 sec   (797 perm/sec)   p_kst 2.647566e-02   p_cons 6.995575e-04   p_joint 3.013274e-04

Joint ci ratio: 1.498623e-01	ci left: 2.787393e-04	ci right 3.243135e-04	k: 683	n:2270000
Cons ci ratio: 9.821144e-02	ci left: 6.668718e-04	ci right 7.361743e-04	k: 1591	n:2270000
KS ci ratio: 1.577948e-02	ci left: 2.625853e-02	ci right 2.667660e-02	k: 60080	n:2270000
SMAD4   2270000 perm   2858 sec   (794 perm/sec)   p_kst 2.646696e-02   p_cons 7.008811e-04   p_joint 3.008811e-04

Joint ci ratio: 1.496437e-01	ci left: 2.783611e-04	ci right 3.238011e-04	k: 685	n:2280000
Cons ci ratio: 9.799624e-02	ci left: 6.669418e-04	ci right 7.360909e-04	k: 1598	n:2280000
KS ci ratio: 1.574519e-02	ci left: 2.625782e-02	ci right 2.667496e-02	k: 60342	n:2280000
SMAD4   2280000 perm   2880 sec   (792 perm/sec)   p_kst 2.646579e-02   p_cons 7.008772e-04   p_joint 3.004386e-04

Joint ci ratio: 1.536150e-01	ci left: 2.624413e-04	ci right 3.065241e-04	k: 650	n:2290000
Cons ci ratio: 9.781292e-02	ci left: 6.665853e-04	ci right 7.355608e-04	k: 1604	n:2290000
KS ci ratio: 1.571273e-02	ci left: 2.625190e-02	ci right 2.666808e-02	k: 60592	n:2290000
SMAD4   2290000 perm   2905 sec   (788 perm/sec)   p_kst 2.645939e-02   p_cons 7.004367e-04   p_joint 2.838428e-04

Joint ci ratio: 1.531452e-01	ci left: 2.629727e-04	ci right 3.069972e-04	k: 654	n:2300000
Cons ci ratio: 9.763062e-02	ci left: 6.662321e-04	ci right 7.350351e-04	k: 1610	n:2300000
KS ci ratio: 1.567637e-02	ci left: 2.625945e-02	ci right 2.667478e-02	k: 60873	n:2300000
SMAD4   2300000 perm   2927 sec   (786 perm/sec)   p_kst 2.646652e-02   p_cons 7.000000e-04   p_joint 2.843478e-04

Joint ci ratio: 1.666754e-01	ci left: 2.194418e-04	ci right 2.597506e-04	k: 552	n:2310000
Cons ci ratio: 9.738909e-02	ci left: 6.667267e-04	ci right 7.354008e-04	k: 1618	n:2310000
KS ci ratio: 1.564052e-02	ci left: 2.626608e-02	ci right 2.668056e-02	k: 61152	n:2310000
SMAD4   2310000 perm   2950 sec   (783 perm/sec)   p_kst 2.647273e-02   p_cons 7.004329e-04   p_joint 2.389610e-04

Joint ci ratio: 1.659268e-01	ci left: 2.205614e-04	ci right 2.608758e-04	k: 557	n:2320000
Cons ci ratio: 9.729907e-02	ci left: 6.651145e-04	ci right 7.335556e-04	k: 1621	n:2320000
KS ci ratio: 1.560791e-02	ci left: 2.626278e-02	ci right 2.667633e-02	k: 61408	n:2320000
SMAD4   2320000 perm   2972 sec   (781 perm/sec)   p_kst 2.646897e-02   p_cons 6.987069e-04   p_joint 2.400862e-04

Joint ci ratio: 1.654826e-01	ci left: 2.208489e-04	ci right 2.610970e-04	k: 560	n:2330000
Cons ci ratio: 9.714949e-02	ci left: 6.643536e-04	ci right 7.326053e-04	k: 1626	n:2330000
KS ci ratio: 1.556967e-02	ci left: 2.627875e-02	ci right 2.669153e-02	k: 61709	n:2330000
SMAD4   2330000 perm   2995 sec   (778 perm/sec)   p_kst 2.648455e-02   p_cons 6.978541e-04   p_joint 2.403433e-04

Joint ci ratio: 1.654827e-01	ci left: 2.199051e-04	ci right 2.599812e-04	k: 560	n:2340000
Cons ci ratio: 9.694117e-02	ci left: 6.644334e-04	ci right 7.325386e-04	k: 1633	n:2340000
KS ci ratio: 1.553648e-02	ci left: 2.627883e-02	ci right 2.669072e-02	k: 61973	n:2340000
SMAD4   2340000 perm   3018 sec   (775 perm/sec)   p_kst 2.648419e-02   p_cons 6.978632e-04   p_joint 2.393162e-04

Joint ci ratio: 1.650419e-01	ci left: 2.201931e-04	ci right 2.602043e-04	k: 563	n:2350000
Cons ci ratio: 9.682280e-02	ci left: 6.632669e-04	ci right 7.311648e-04	k: 1637	n:2350000
KS ci ratio: 1.550158e-02	ci left: 2.628527e-02	ci right 2.669633e-02	k: 62252	n:2350000
SMAD4   2350000 perm   3041 sec   (773 perm/sec)   p_kst 2.649021e-02   p_cons 6.965957e-04   p_joint 2.395745e-04

Joint ci ratio: 1.646047e-01	ci left: 2.204789e-04	ci right 2.604253e-04	k: 566	n:2360000
Cons ci ratio: 9.655785e-02	ci left: 6.641778e-04	ci right 7.319724e-04	k: 1646	n:2360000
KS ci ratio: 1.546704e-02	ci left: 2.629123e-02	ci right 2.670146e-02	k: 62530	n:2360000
SMAD4   2360000 perm   3064 sec   (770 perm/sec)   p_kst 2.649576e-02   p_cons 6.974576e-04   p_joint 2.398305e-04

Joint ci ratio: 1.644598e-01	ci left: 2.199532e-04	ci right 2.597658e-04	k: 567	n:2370000
Cons ci ratio: 9.641166e-02	ci left: 6.634341e-04	ci right 7.310445e-04	k: 1651	n:2370000
KS ci ratio: 1.543374e-02	ci left: 2.629378e-02	ci right 2.670316e-02	k: 62800	n:2370000
SMAD4   2370000 perm   3087 sec   (768 perm/sec)   p_kst 2.649789e-02   p_cons 6.966245e-04   p_joint 2.392405e-04

Joint ci ratio: 1.640272e-01	ci left: 2.202377e-04	ci right 2.599866e-04	k: 570	n:2380000
Cons ci ratio: 9.620804e-02	ci left: 6.635169e-04	ci right 7.309849e-04	k: 1658	n:2380000
KS ci ratio: 1.539839e-02	ci left: 2.630384e-02	ci right 2.671243e-02	k: 63088	n:2380000
SMAD4   2380000 perm   3110 sec   (765 perm/sec)   p_kst 2.650756e-02   p_cons 6.966387e-04   p_joint 2.394958e-04

Joint ci ratio: 1.634556e-01	ci left: 2.209212e-04	ci right 2.606409e-04	k: 574	n:2390000
Cons ci ratio: 9.591933e-02	ci left: 6.648243e-04	ci right 7.322109e-04	k: 1668	n:2390000
KS ci ratio: 1.536366e-02	ci left: 2.631258e-02	ci right 2.672037e-02	k: 63373	n:2390000
SMAD4   2390000 perm   3133 sec   (763 perm/sec)   p_kst 2.651590e-02   p_cons 6.979079e-04   p_joint 2.401674e-04

Joint ci ratio: 1.633137e-01	ci left: 2.204004e-04	ci right 2.599886e-04	k: 575	n:2400000
Cons ci ratio: 9.580465e-02	ci left: 6.636809e-04	ci right 7.308667e-04	k: 1672	n:2400000
KS ci ratio: 1.533090e-02	ci left: 2.631542e-02	ci right 2.672239e-02	k: 63644	n:2400000
SMAD4   2400000 perm   3157 sec   (760 perm/sec)   p_kst 2.651833e-02   p_cons 6.966667e-04   p_joint 2.395833e-04

Joint ci ratio: 1.358781e-01	ci left: 3.217684e-04	ci right 3.690723e-04	k: 831	n:2410000
Cons ci ratio: 9.563333e-02	ci left: 6.633571e-04	ci right 7.303832e-04	k: 1678	n:2410000
KS ci ratio: 1.530290e-02	ci left: 2.630295e-02	ci right 2.670897e-02	k: 63878	n:2410000
SMAD4   2410000 perm   3180 sec   (758 perm/sec)   p_kst 2.650539e-02   p_cons 6.962656e-04   p_joint 3.448133e-04

Joint ci ratio: 1.355526e-01	ci left: 3.220355e-04	ci right 3.692562e-04	k: 835	n:2420000
Cons ci ratio: 9.549129e-02	ci left: 6.626326e-04	ci right 7.294806e-04	k: 1683	n:2420000
KS ci ratio: 1.526991e-02	ci left: 2.630788e-02	ci right 2.671309e-02	k: 64154	n:2420000
SMAD4   2420000 perm   3204 sec   (755 perm/sec)   p_kst 2.650992e-02   p_cons 6.954545e-04   p_joint 3.450413e-04

Joint ci ratio: 1.357152e-01	ci left: 3.199151e-04	ci right 3.668857e-04	k: 833	n:2430000
Cons ci ratio: 9.534988e-02	ci left: 6.619143e-04	ci right 7.285853e-04	k: 1688	n:2430000
KS ci ratio: 1.523701e-02	ci left: 2.631317e-02	ci right 2.671759e-02	k: 64431	n:2430000
SMAD4   2430000 perm   3228 sec   (753 perm/sec)   p_kst 2.651481e-02   p_cons 6.946502e-04   p_joint 3.427984e-04

Joint ci ratio: 1.356340e-01	ci left: 3.189999e-04	ci right 3.658058e-04	k: 834	n:2440000
Cons ci ratio: 9.515291e-02	ci left: 6.620020e-04	ci right 7.285365e-04	k: 1695	n:2440000
KS ci ratio: 1.520710e-02	ci left: 2.630903e-02	ci right 2.671258e-02	k: 64685	n:2440000
SMAD4   2440000 perm   3252 sec   (750 perm/sec)   p_kst 2.651025e-02   p_cons 6.946721e-04   p_joint 3.418033e-04

Joint ci ratio: 1.355529e-01	ci left: 3.180922e-04	ci right 3.647348e-04	k: 835	n:2450000
Cons ci ratio: 9.487356e-02	ci left: 6.632846e-04	ci right 7.297415e-04	k: 1705	n:2450000
KS ci ratio: 1.517809e-02	ci left: 2.630249e-02	ci right 2.670516e-02	k: 64933	n:2450000
SMAD4   2450000 perm   3276 sec   (748 perm/sec)   p_kst 2.650327e-02   p_cons 6.959184e-04   p_joint 3.408163e-04

Joint ci ratio: 1.353911e-01	ci left: 3.175846e-04	ci right 3.640927e-04	k: 837	n:2460000
Cons ci ratio: 9.445905e-02	ci left: 6.665416e-04	ci right 7.330168e-04	k: 1720	n:2460000
KS ci ratio: 1.514542e-02	ci left: 2.630896e-02	ci right 2.671086e-02	k: 65213	n:2460000
SMAD4   2460000 perm   3300 sec   (745 perm/sec)   p_kst 2.650935e-02   p_cons 6.991870e-04   p_joint 3.402439e-04

Joint ci ratio: 1.349089e-01	ci left: 3.186458e-04	ci right 3.651298e-04	k: 843	n:2470000
Cons ci ratio: 9.429484e-02	ci left: 6.662149e-04	ci right 7.325356e-04	k: 1726	n:2470000
KS ci ratio: 1.511593e-02	ci left: 2.630529e-02	ci right 2.670635e-02	k: 65468	n:2470000
SMAD4   2470000 perm   3324 sec   (743 perm/sec)   p_kst 2.650526e-02   p_cons 6.987854e-04   p_joint 3.412955e-04

Joint ci ratio: 1.345903e-01	ci left: 3.189195e-04	ci right 3.653248e-04	k: 847	n:2480000
Cons ci ratio: 9.418589e-02	ci left: 6.651034e-04	ci right 7.312328e-04	k: 1730	n:2480000
KS ci ratio: 1.508590e-02	ci left: 2.630407e-02	ci right 2.670430e-02	k: 65729	n:2480000
SMAD4   2480000 perm   3347 sec   (741 perm/sec)   p_kst 2.650363e-02   p_cons 6.975806e-04   p_joint 3.415323e-04

Joint ci ratio: 1.351496e-01	ci left: 3.149223e-04	ci right 3.609516e-04	k: 840	n:2490000
Cons ci ratio: 9.407731e-02	ci left: 6.640009e-04	ci right 7.299404e-04	k: 1734	n:2490000
KS ci ratio: 1.505324e-02	ci left: 2.631246e-02	ci right 2.671194e-02	k: 66014	n:2490000
SMAD4   2490000 perm   3371 sec   (739 perm/sec)   p_kst 2.651165e-02   p_cons 6.963855e-04   p_joint 3.373494e-04

Joint ci ratio: 1.360426e-01	ci left: 3.094118e-04	ci right 3.549587e-04	k: 829	n:2500000
Cons ci ratio: 9.399615e-02	ci left: 6.625166e-04	ci right 7.282488e-04	k: 1737	n:2500000
KS ci ratio: 1.502451e-02	ci left: 2.630802e-02	ci right 2.670667e-02	k: 66267	n:2500000
SMAD4   2500000 perm   3396 sec   (736 perm/sec)   p_kst 2.650680e-02   p_cons 6.948000e-04   p_joint 3.316000e-04

Joint ci ratio: 1.360427e-01	ci left: 3.081791e-04	ci right 3.535445e-04	k: 829	n:2510000
Cons ci ratio: 9.391521e-02	ci left: 6.610442e-04	ci right 7.265708e-04	k: 1740	n:2510000
KS ci ratio: 1.499537e-02	ci left: 2.630561e-02	ci right 2.670345e-02	k: 66525	n:2510000
SMAD4   2510000 perm   3420 sec   (734 perm/sec)   p_kst 2.650398e-02   p_cons 6.932271e-04   p_joint 3.302789e-04

Joint ci ratio: 1.357975e-01	ci left: 3.081061e-04	ci right 3.533725e-04	k: 832	n:2520000
Cons ci ratio: 9.372697e-02	ci left: 6.611337e-04	ci right 7.265305e-04	k: 1747	n:2520000
KS ci ratio: 1.496306e-02	ci left: 2.631469e-02	ci right 2.671180e-02	k: 66812	n:2520000
SMAD4   2520000 perm   3444 sec   (732 perm/sec)   p_kst 2.651270e-02   p_cons 6.932540e-04   p_joint 3.301587e-04

Joint ci ratio: 1.356348e-01	ci left: 3.076520e-04	ci right 3.527931e-04	k: 834	n:2530000
Cons ci ratio: 9.356654e-02	ci left: 6.608365e-04	ci right 7.260859e-04	k: 1753	n:2530000
KS ci ratio: 1.493428e-02	ci left: 2.631227e-02	ci right 2.670857e-02	k: 67070	n:2530000
SMAD4   2530000 perm   3468 sec   (730 perm/sec)   p_kst 2.650988e-02   p_cons 6.928854e-04   p_joint 3.296443e-04

Joint ci ratio: 1.354727e-01	ci left: 3.072014e-04	ci right 3.522183e-04	k: 836	n:2540000
Cons ci ratio: 9.332738e-02	ci left: 6.616953e-04	ci right 7.268534e-04	k: 1762	n:2540000
KS ci ratio: 1.490452e-02	ci left: 2.631380e-02	ci right 2.670933e-02	k: 67338	n:2540000
SMAD4   2540000 perm   3493 sec   (727 perm/sec)   p_kst 2.651102e-02   p_cons 6.937008e-04   p_joint 3.291339e-04

Joint ci ratio: 1.352305e-01	ci left: 3.071334e-04	ci right 3.520533e-04	k: 839	n:2550000
Cons ci ratio: 9.324814e-02	ci left: 6.602494e-04	ci right 7.252069e-04	k: 1765	n:2550000
KS ci ratio: 1.487562e-02	ci left: 2.631297e-02	ci right 2.670771e-02	k: 67600	n:2550000
SMAD4   2550000 perm   3517 sec   (725 perm/sec)   p_kst 2.650980e-02   p_cons 6.921569e-04   p_joint 3.290196e-04

Joint ci ratio: 1.349897e-01	ci left: 3.070659e-04	ci right 3.518896e-04	k: 842	n:2560000
Cons ci ratio: 9.306388e-02	ci left: 6.603410e-04	ci right 7.251721e-04	k: 1772	n:2560000
KS ci ratio: 1.484711e-02	ci left: 2.631137e-02	ci right 2.670532e-02	k: 67860	n:2560000
SMAD4   2560000 perm   3542 sec   (723 perm/sec)   p_kst 2.650781e-02   p_cons 6.921875e-04   p_joint 3.289062e-04

Joint ci ratio: 1.346706e-01	ci left: 3.073750e-04	ci right 3.521292e-04	k: 846	n:2570000
Cons ci ratio: 9.298532e-02	ci left: 6.589117e-04	ci right 7.235449e-04	k: 1775	n:2570000
KS ci ratio: 1.482100e-02	ci left: 2.630203e-02	ci right 2.669515e-02	k: 68100	n:2570000
SMAD4   2570000 perm   3567 sec   (721 perm/sec)   p_kst 2.649805e-02   p_cons 6.906615e-04   p_joint 3.291829e-04

Joint ci ratio: 1.345912e-01	ci left: 3.065582e-04	ci right 3.511650e-04	k: 847	n:2580000
Cons ci ratio: 9.275057e-02	ci left: 6.597651e-04	ci right 7.243098e-04	k: 1784	n:2580000
KS ci ratio: 1.479225e-02	ci left: 2.630242e-02	ci right 2.669477e-02	k: 68365	n:2580000
SMAD4   2580000 perm   3592 sec   (718 perm/sec)   p_kst 2.649806e-02   p_cons 6.914729e-04   p_joint 3.282946e-04

Joint ci ratio: 1.344328e-01	ci left: 3.061208e-04	ci right 3.506074e-04	k: 849	n:2590000
Cons ci ratio: 9.259509e-02	ci left: 6.594807e-04	ci right 7.238836e-04	k: 1790	n:2590000
KS ci ratio: 1.476654e-02	ci left: 2.629280e-02	ci right 2.668432e-02	k: 68604	n:2590000
SMAD4   2590000 perm   3617 sec   (716 perm/sec)   p_kst 2.648803e-02   p_cons 6.911197e-04   p_joint 3.277992e-04

Joint ci ratio: 1.341176e-01	ci left: 3.064302e-04	ci right 3.508490e-04	k: 853	n:2600000
Cons ci ratio: 9.251771e-02	ci left: 6.580713e-04	ci right 7.222800e-04	k: 1793	n:2600000
KS ci ratio: 1.473601e-02	ci left: 2.630050e-02	ci right 2.669132e-02	k: 68888	n:2600000
SMAD4   2600000 perm   3642 sec   (714 perm/sec)   p_kst 2.649538e-02   p_cons 6.896154e-04   p_joint 3.280769e-04

Joint ci ratio: 1.338046e-01	ci left: 3.067373e-04	ci right 3.510886e-04	k: 857	n:2610000
Cons ci ratio: 9.236340e-02	ci left: 6.577957e-04	ci right 7.218646e-04	k: 1799	n:2610000
KS ci ratio: 1.471015e-02	ci left: 2.629250e-02	ci right 2.668250e-02	k: 69131	n:2610000
SMAD4   2610000 perm   3668 sec   (712 perm/sec)   p_kst 2.648697e-02   p_cons 6.892720e-04   p_joint 3.283525e-04

Joint ci ratio: 1.369544e-01	ci left: 2.911850e-04	ci right 3.343595e-04	k: 818	n:2620000
Cons ci ratio: 9.218433e-02	ci left: 6.578951e-04	ci right 7.218428e-04	k: 1806	n:2620000
KS ci ratio: 1.468280e-02	ci left: 2.629025e-02	ci right 2.667950e-02	k: 69389	n:2620000
SMAD4   2620000 perm   3694 sec   (709 perm/sec)   p_kst 2.648435e-02   p_cons 6.893130e-04   p_joint 3.122137e-04

Joint ci ratio: 1.406990e-01	ci left: 2.742956e-04	ci right 3.161712e-04	k: 775	n:2630000
Cons ci ratio: 9.203168e-02	ci left: 6.576224e-04	ci right 7.214320e-04	k: 1812	n:2630000
KS ci ratio: 1.465549e-02	ci left: 2.628841e-02	ci right 2.667689e-02	k: 69648	n:2630000
SMAD4   2630000 perm   3719 sec   (707 perm/sec)   p_kst 2.648213e-02   p_cons 6.889734e-04   p_joint 2.946768e-04

Joint ci ratio: 1.402479e-01	ci left: 2.750840e-04	ci right 3.169340e-04	k: 780	n:2640000
Cons ci ratio: 9.182928e-02	ci left: 6.580921e-04	ci right 7.217993e-04	k: 1820	n:2640000
KS ci ratio: 1.462973e-02	ci left: 2.628167e-02	ci right 2.666937e-02	k: 69894	n:2640000
SMAD4   2640000 perm   3744 sec   (705 perm/sec)   p_kst 2.647500e-02   p_cons 6.893939e-04   p_joint 2.954545e-04

Joint ci ratio: 1.400686e-01	ci left: 2.747742e-04	ci right 3.165192e-04	k: 782	n:2650000
Cons ci ratio: 9.157812e-02	ci left: 6.592958e-04	ci right 7.229356e-04	k: 1830	n:2650000
KS ci ratio: 1.460325e-02	ci left: 2.627799e-02	ci right 2.666493e-02	k: 70148	n:2650000
SMAD4   2650000 perm   3770 sec   (703 perm/sec)   p_kst 2.647094e-02   p_cons 6.905660e-04   p_joint 2.950943e-04

Joint ci ratio: 1.397122e-01	ci left: 2.751923e-04	ci right 3.168856e-04	k: 786	n:2660000
Cons ci ratio: 9.142846e-02	ci left: 6.590212e-04	ci right 7.225250e-04	k: 1836	n:2660000
KS ci ratio: 1.457479e-02	ci left: 2.628184e-02	ci right 2.666807e-02	k: 70422	n:2660000
SMAD4   2660000 perm   3796 sec   (701 perm/sec)   p_kst 2.647444e-02   p_cons 6.902256e-04   p_joint 2.954887e-04

Joint ci ratio: 1.394467e-01	ci left: 2.752460e-04	ci right 3.168616e-04	k: 789	n:2670000
Cons ci ratio: 9.127953e-02	ci left: 6.587488e-04	ci right 7.221175e-04	k: 1842	n:2670000
KS ci ratio: 1.454660e-02	ci left: 2.628528e-02	ci right 2.667081e-02	k: 70695	n:2670000
SMAD4   2670000 perm   3821 sec   (699 perm/sec)   p_kst 2.647753e-02   p_cons 6.898876e-04   p_joint 2.955056e-04

Joint ci ratio: 1.397124e-01	ci left: 2.731386e-04	ci right 3.145208e-04	k: 786	n:2680000
Cons ci ratio: 9.103284e-02	ci left: 6.599371e-04	ci right 7.232394e-04	k: 1852	n:2680000
KS ci ratio: 1.451657e-02	ci left: 2.629576e-02	ci right 2.668064e-02	k: 70987	n:2680000
SMAD4   2680000 perm   3847 sec   (697 perm/sec)   p_kst 2.648769e-02   p_cons 6.910448e-04   p_joint 2.932836e-04

Joint ci ratio: 1.393586e-01	ci left: 2.735583e-04	ci right 3.148905e-04	k: 790	n:2690000
Cons ci ratio: 9.081253e-02	ci left: 6.607535e-04	ci right 7.239725e-04	k: 1861	n:2690000
KS ci ratio: 1.448914e-02	ci left: 2.629764e-02	ci right 2.668182e-02	k: 71256	n:2690000
SMAD4   2690000 perm   3873 sec   (695 perm/sec)   p_kst 2.648922e-02   p_cons 6.918216e-04   p_joint 2.936803e-04

Joint ci ratio: 1.476164e-01	ci left: 2.418355e-04	ci right 2.807310e-04	k: 704	n:2700000
Cons ci ratio: 9.073953e-02	ci left: 6.593921e-04	ci right 7.224275e-04	k: 1864	n:2700000
KS ci ratio: 1.445926e-02	ci left: 2.630874e-02	ci right 2.669228e-02	k: 71550	n:2700000
SMAD4   2700000 perm   3899 sec   (693 perm/sec)   p_kst 2.650000e-02   p_cons 6.903704e-04   p_joint 2.607407e-04

Joint ci ratio: 1.481429e-01	ci left: 2.391663e-04	ci right 2.777819e-04	k: 699	n:2710000
Cons ci ratio: 9.047304e-02	ci left: 6.609260e-04	ci right 7.239126e-04	k: 1875	n:2710000
KS ci ratio: 1.443328e-02	ci left: 2.630652e-02	ci right 2.668933e-02	k: 71808	n:2710000
SMAD4   2710000 perm   3925 sec   (690 perm/sec)   p_kst 2.649742e-02   p_cons 6.918819e-04   p_joint 2.579336e-04

Joint ci ratio: 1.480372e-01	ci left: 2.386411e-04	ci right 2.771419e-04	k: 700	n:2720000
Cons ci ratio: 9.037679e-02	ci left: 6.599335e-04	ci right 7.227551e-04	k: 1879	n:2720000
KS ci ratio: 1.440723e-02	ci left: 2.630505e-02	ci right 2.668714e-02	k: 72068	n:2720000
SMAD4   2720000 perm   3950 sec   (689 perm/sec)   p_kst 2.649559e-02   p_cons 6.908088e-04   p_joint 2.573529e-04

Joint ci ratio: 1.477215e-01	ci left: 2.388252e-04	ci right 2.772662e-04	k: 703	n:2730000
Cons ci ratio: 9.025688e-02	ci left: 6.593063e-04	ci right 7.219805e-04	k: 1884	n:2730000
KS ci ratio: 1.438204e-02	ci left: 2.630103e-02	ci right 2.668239e-02	k: 72321	n:2730000
SMAD4   2730000 perm   3977 sec   (686 perm/sec)   p_kst 2.649121e-02   p_cons 6.901099e-04   p_joint 2.575092e-04

Joint ci ratio: 1.473036e-01	ci left: 2.393595e-04	ci right 2.777680e-04	k: 707	n:2740000
Cons ci ratio: 9.001837e-02	ci left: 6.604674e-04	ci right 7.230774e-04	k: 1894	n:2740000
KS ci ratio: 1.435719e-02	ci left: 2.629632e-02	ci right 2.667695e-02	k: 72572	n:2740000
SMAD4   2740000 perm   4003 sec   (684 perm/sec)   p_kst 2.648613e-02   p_cons 6.912409e-04   p_joint 2.580292e-04

Joint ci ratio: 1.467861e-01	ci left: 2.402404e-04	ci right 2.786430e-04	k: 712	n:2750000
Cons ci ratio: 8.985257e-02	ci left: 6.605539e-04	ci right 7.230507e-04	k: 1901	n:2750000
KS ci ratio: 1.432984e-02	ci left: 2.630106e-02	ci right 2.668103e-02	k: 72849	n:2750000
SMAD4   2750000 perm   4029 sec   (682 perm/sec)   p_kst 2.649055e-02   p_cons 6.912727e-04   p_joint 2.589091e-04

Joint ci ratio: 1.465807e-01	ci left: 2.400680e-04	ci right 2.783846e-04	k: 714	n:2760000
Cons ci ratio: 8.961724e-02	ci left: 6.617025e-04	ci right 7.241354e-04	k: 1911	n:2760000
KS ci ratio: 1.430204e-02	ci left: 2.630794e-02	ci right 2.668726e-02	k: 73132	n:2760000
SMAD4   2760000 perm   4056 sec   (680 perm/sec)   p_kst 2.649710e-02   p_cons 6.923913e-04   p_joint 2.586957e-04

Joint ci ratio: 1.461723e-01	ci left: 2.405925e-04	ci right 2.788765e-04	k: 718	n:2770000
Cons ci ratio: 8.938375e-02	ci left: 6.628430e-04	ci right 7.252120e-04	k: 1921	n:2770000
KS ci ratio: 1.427629e-02	ci left: 2.630793e-02	ci right 2.668656e-02	k: 73396	n:2770000
SMAD4   2770000 perm   4082 sec   (679 perm/sec)   p_kst 2.649675e-02   p_cons 6.935018e-04   p_joint 2.592058e-04

Joint ci ratio: 1.458683e-01	ci left: 2.407668e-04	ci right 2.789919e-04	k: 721	n:2780000
Cons ci ratio: 8.926774e-02	ci left: 6.622171e-04	ci right 7.244421e-04	k: 1926	n:2780000
KS ci ratio: 1.425049e-02	ci left: 2.630864e-02	ci right 2.668659e-02	k: 73662	n:2780000
SMAD4   2780000 perm   4109 sec   (677 perm/sec)   p_kst 2.649712e-02   p_cons 6.928058e-04   p_joint 2.593525e-04

Joint ci ratio: 1.458684e-01	ci left: 2.399038e-04	ci right 2.779919e-04	k: 721	n:2790000
Cons ci ratio: 8.917529e-02	ci left: 6.612452e-04	ci right 7.233112e-04	k: 1930	n:2790000
KS ci ratio: 1.422443e-02	ci left: 2.631077e-02	ci right 2.668806e-02	k: 73932	n:2790000
SMAD4   2790000 perm   4135 sec   (675 perm/sec)   p_kst 2.649892e-02   p_cons 6.917563e-04   p_joint 2.584229e-04

Joint ci ratio: 1.454660e-01	ci left: 2.404235e-04	ci right 2.784797e-04	k: 725	n:2800000
Cons ci ratio: 8.901409e-02	ci left: 6.613279e-04	ci right 7.232837e-04	k: 1937	n:2800000
KS ci ratio: 1.419930e-02	ci left: 2.631004e-02	ci right 2.668665e-02	k: 74194	n:2800000
SMAD4   2800000 perm   4162 sec   (673 perm/sec)   p_kst 2.649786e-02   p_cons 6.917857e-04   p_joint 2.589286e-04

Joint ci ratio: 1.451663e-01	ci left: 2.405967e-04	ci right 2.785950e-04	k: 728	n:2810000
Cons ci ratio: 8.887663e-02	ci left: 6.610622e-04	ci right 7.228924e-04	k: 1943	n:2810000
KS ci ratio: 1.417460e-02	ci left: 2.630826e-02	ci right 2.668418e-02	k: 74453	n:2810000
SMAD4   2810000 perm   4189 sec   (671 perm/sec)   p_kst 2.649573e-02   p_cons 6.914591e-04   p_joint 2.590747e-04

Joint ci ratio: 1.448685e-01	ci left: 2.407688e-04	ci right 2.787095e-04	k: 731	n:2820000
Cons ci ratio: 8.878538e-02	ci left: 6.601049e-04	ci right 7.217789e-04	k: 1947	n:2820000
KS ci ratio: 1.415246e-02	ci left: 2.629765e-02	ci right 2.667283e-02	k: 74687	n:2820000
SMAD4   2820000 perm   4216 sec   (669 perm/sec)   p_kst 2.648475e-02   p_cons 6.904255e-04   p_joint 2.592199e-04

Joint ci ratio: 1.447697e-01	ci left: 2.402586e-04	ci right 2.780908e-04	k: 732	n:2830000
Cons ci ratio: 8.858096e-02	ci left: 6.608821e-04	ci right 7.224792e-04	k: 1956	n:2830000
KS ci ratio: 1.412626e-02	ci left: 2.630226e-02	ci right 2.667680e-02	k: 74964	n:2830000
SMAD4   2830000 perm   4243 sec   (667 perm/sec)   p_kst 2.648905e-02   p_cons 6.911661e-04   p_joint 2.586572e-04

Joint ci ratio: 1.441807e-01	ci left: 2.414489e-04	ci right 2.793006e-04	k: 738	n:2840000
Cons ci ratio: 8.853580e-02	ci left: 6.592436e-04	ci right 7.206551e-04	k: 1958	n:2840000
KS ci ratio: 1.409981e-02	ci left: 2.630824e-02	ci right 2.668216e-02	k: 75245	n:2840000
SMAD4   2840000 perm   4271 sec   (665 perm/sec)   p_kst 2.649472e-02   p_cons 6.894366e-04   p_joint 2.598592e-04

Joint ci ratio: 1.439861e-01	ci left: 2.412782e-04	ci right 2.790477e-04	k: 740	n:2850000
Cons ci ratio: 8.840055e-02	ci left: 6.589892e-04	ci right 7.202783e-04	k: 1964	n:2850000
KS ci ratio: 1.407428e-02	ci left: 2.631138e-02	ci right 2.668467e-02	k: 75518	n:2850000
SMAD4   2850000 perm   4297 sec   (663 perm/sec)   p_kst 2.649754e-02   p_cons 6.891228e-04   p_joint 2.596491e-04

Joint ci ratio: 1.437921e-01	ci left: 2.411087e-04	ci right 2.787964e-04	k: 742	n:2860000
Cons ci ratio: 8.826590e-02	ci left: 6.587366e-04	ci right 7.199041e-04	k: 1970	n:2860000
KS ci ratio: 1.405042e-02	ci left: 2.630893e-02	ci right 2.668154e-02	k: 75775	n:2860000
SMAD4   2860000 perm   4324 sec   (661 perm/sec)   p_kst 2.649476e-02   p_cons 6.888112e-04   p_joint 2.594406e-04

Joint ci ratio: 1.435027e-01	ci left: 2.412763e-04	ci right 2.789078e-04	k: 745	n:2870000
Cons ci ratio: 8.793182e-02	ci left: 6.615527e-04	ci right 7.227373e-04	k: 1985	n:2870000
KS ci ratio: 1.402553e-02	ci left: 2.631066e-02	ci right 2.668263e-02	k: 76044	n:2870000
SMAD4   2870000 perm   4352 sec   (659 perm/sec)   p_kst 2.649617e-02   p_cons 6.916376e-04   p_joint 2.595819e-04

Joint ci ratio: 1.435028e-01	ci left: 2.404385e-04	ci right 2.779394e-04	k: 745	n:2880000
Cons ci ratio: 8.782137e-02	ci left: 6.609536e-04	ci right 7.220020e-04	k: 1990	n:2880000
KS ci ratio: 1.399984e-02	ci left: 2.631584e-02	ci right 2.668720e-02	k: 76323	n:2880000
SMAD4   2880000 perm   4380 sec   (658 perm/sec)   p_kst 2.650104e-02   p_cons 6.909722e-04   p_joint 2.586806e-04

Joint ci ratio: 1.431196e-01	ci left: 2.409410e-04	ci right 2.784114e-04	k: 749	n:2890000
Cons ci ratio: 8.768935e-02	ci left: 6.606971e-04	ci right 7.216254e-04	k: 1996	n:2890000
KS ci ratio: 1.397560e-02	ci left: 2.631616e-02	ci right 2.668687e-02	k: 76588	n:2890000
SMAD4   2890000 perm   4408 sec   (656 perm/sec)   p_kst 2.650104e-02   p_cons 6.906574e-04   p_joint 2.591696e-04

Joint ci ratio: 1.431196e-01	ci left: 2.401102e-04	ci right 2.774513e-04	k: 749	n:2900000
Cons ci ratio: 8.751422e-02	ci left: 6.611171e-04	ci right 7.219561e-04	k: 2004	n:2900000
KS ci ratio: 1.395279e-02	ci left: 2.631166e-02	ci right 2.668170e-02	k: 76839	n:2900000
SMAD4   2900000 perm   4437 sec   (654 perm/sec)   p_kst 2.649621e-02   p_cons 6.910345e-04   p_joint 2.582759e-04

Joint ci ratio: 1.429292e-01	ci left: 2.399477e-04	ci right 2.772098e-04	k: 751	n:2910000
Cons ci ratio: 8.734013e-02	ci left: 6.615342e-04	ci right 7.222844e-04	k: 2012	n:2910000
KS ci ratio: 1.392508e-02	ci left: 2.632569e-02	ci right 2.669518e-02	k: 77144	n:2910000
SMAD4   2910000 perm   4465 sec   (652 perm/sec)   p_kst 2.650997e-02   p_cons 6.914089e-04   p_joint 2.580756e-04

Joint ci ratio: 1.427395e-01	ci left: 2.397865e-04	ci right 2.769698e-04	k: 753	n:2920000
Cons ci ratio: 8.718867e-02	ci left: 6.616136e-04	ci right 7.222603e-04	k: 2019	n:2920000
KS ci ratio: 1.390289e-02	ci left: 2.631983e-02	ci right 2.668865e-02	k: 77391	n:2920000
SMAD4   2920000 perm   4492 sec   (650 perm/sec)   p_kst 2.650377e-02   p_cons 6.914384e-04   p_joint 2.578767e-04

Joint ci ratio: 1.426450e-01	ci left: 2.392972e-04	ci right 2.763780e-04	k: 754	n:2930000
Cons ci ratio: 8.708099e-02	ci left: 6.610249e-04	ci right 7.215390e-04	k: 2024	n:2930000
KS ci ratio: 1.388126e-02	ci left: 2.631231e-02	ci right 2.668044e-02	k: 77633	n:2930000
SMAD4   2930000 perm   4519 sec   (648 perm/sec)   p_kst 2.649590e-02   p_cons 6.907850e-04   p_joint 2.573379e-04

Joint ci ratio: 1.258428e-01	ci left: 3.091668e-04	ci right 3.510113e-04	k: 969	n:2940000
Cons ci ratio: 8.695228e-02	ci left: 6.607729e-04	ci right 7.211700e-04	k: 2030	n:2940000
KS ci ratio: 1.385918e-02	ci left: 2.630687e-02	ci right 2.667434e-02	k: 77881	n:2940000
SMAD4   2940000 perm   4547 sec   (647 perm/sec)   p_kst 2.649014e-02   p_cons 6.904762e-04   p_joint 3.295918e-04

Joint ci ratio: 1.255841e-01	ci left: 3.094321e-04	ci right 3.512200e-04	k: 973	n:2950000
Cons ci ratio: 8.684547e-02	ci left: 6.601910e-04	ci right 7.204571e-04	k: 2035	n:2950000
KS ci ratio: 1.383557e-02	ci left: 2.630755e-02	ci right 2.667440e-02	k: 78147	n:2950000
SMAD4   2950000 perm   4576 sec   (645 perm/sec)   p_kst 2.649051e-02   p_cons 6.898305e-04   p_joint 3.298305e-04

Joint ci ratio: 1.255198e-01	ci left: 3.087139e-04	ci right 3.503819e-04	k: 974	n:2960000
Cons ci ratio: 8.669656e-02	ci left: 6.602742e-04	ci right 7.204393e-04	k: 2042	n:2960000
KS ci ratio: 1.381145e-02	ci left: 2.631058e-02	ci right 2.667683e-02	k: 78420	n:2960000
SMAD4   2960000 perm   4604 sec   (643 perm/sec)   p_kst 2.649324e-02   p_cons 6.898649e-04   p_joint 3.290541e-04

Joint ci ratio: 1.252631e-01	ci left: 3.089791e-04	ci right 3.505912e-04	k: 978	n:2970000
Cons ci ratio: 8.661186e-02	ci left: 6.593687e-04	ci right 7.193895e-04	k: 2046	n:2970000
KS ci ratio: 1.378646e-02	ci left: 2.631729e-02	ci right 2.668296e-02	k: 78704	n:2970000
SMAD4   2970000 perm   4632 sec   (641 perm/sec)   p_kst 2.649966e-02   p_cons 6.888889e-04   p_joint 3.292929e-04

Joint ci ratio: 1.192602e-01	ci left: 3.407993e-04	ci right 3.843423e-04	k: 1079	n:2980000
Cons ci ratio: 8.644309e-02	ci left: 6.597825e-04	ci right 7.197181e-04	k: 2054	n:2980000
KS ci ratio: 1.376116e-02	ci left: 2.632562e-02	ci right 2.669073e-02	k: 78993	n:2980000
SMAD4   2980000 perm   4661 sec   (639 perm/sec)   p_kst 2.650772e-02   p_cons 6.892617e-04   p_joint 3.620805e-04

Joint ci ratio: 1.190949e-01	ci left: 3.406329e-04	ci right 3.840901e-04	k: 1082	n:2990000
Cons ci ratio: 8.625439e-02	ci left: 6.605209e-04	ci right 7.203860e-04	k: 2063	n:2990000
KS ci ratio: 1.373671e-02	ci left: 2.633124e-02	ci right 2.669577e-02	k: 79274	n:2990000
SMAD4   2990000 perm   4689 sec   (638 perm/sec)   p_kst 2.651304e-02   p_cons 6.899666e-04   p_joint 3.618729e-04

Joint ci ratio: 1.188209e-01	ci left: 3.411145e-04	ci right 3.845261e-04	k: 1087	n:3000000
Cons ci ratio: 8.606692e-02	ci left: 6.612546e-04	ci right 7.210493e-04	k: 2072	n:3000000
KS ci ratio: 1.371231e-02	ci left: 2.633714e-02	ci right 2.670110e-02	k: 79556	n:3000000
SMAD4   3000000 perm   4717 sec   (636 perm/sec)   p_kst 2.651867e-02   p_cons 6.906667e-04   p_joint 3.623333e-04

Joint ci ratio: 1.186574e-01	ci left: 3.409483e-04	ci right 3.842748e-04	k: 1090	n:3010000
Cons ci ratio: 8.594264e-02	ci left: 6.610082e-04	ci right 7.206901e-04	k: 2078	n:3010000
KS ci ratio: 1.368838e-02	ci left: 2.634169e-02	ci right 2.670507e-02	k: 79834	n:3010000
SMAD4   3010000 perm   4746 sec   (634 perm/sec)   p_kst 2.652292e-02   p_cons 6.903654e-04   p_joint 3.621262e-04

Joint ci ratio: 1.186575e-01	ci left: 3.398194e-04	ci right 3.830024e-04	k: 1090	n:3020000
Cons ci ratio: 8.583951e-02	ci left: 6.604395e-04	ci right 7.199949e-04	k: 2083	n:3020000
KS ci ratio: 1.366660e-02	ci left: 2.633861e-02	ci right 2.670137e-02	k: 80089	n:3020000
SMAD4   3020000 perm   4774 sec   (633 perm/sec)   p_kst 2.651954e-02   p_cons 6.897351e-04   p_joint 3.609272e-04

Joint ci ratio: 1.181173e-01	ci left: 3.419005e-04	ci right 3.851364e-04	k: 1100	n:3030000
Cons ci ratio: 8.567521e-02	ci left: 6.608435e-04	ci right 7.203155e-04	k: 2091	n:3030000
KS ci ratio: 1.364239e-02	ci left: 2.634510e-02	ci right 2.670730e-02	k: 80373	n:3030000
SMAD4   3030000 perm   4803 sec   (631 perm/sec)   p_kst 2.652574e-02   p_cons 6.900990e-04   p_joint 3.630363e-04

Joint ci ratio: 1.180637e-01	ci left: 3.410950e-04	ci right 3.842081e-04	k: 1101	n:3040000
Cons ci ratio: 8.555263e-02	ci left: 6.606011e-04	ci right 7.199620e-04	k: 2097	n:3040000
KS ci ratio: 1.361891e-02	ci left: 2.634924e-02	ci right 2.671087e-02	k: 80650	n:3040000
SMAD4   3040000 perm   4832 sec   (629 perm/sec)   p_kst 2.652961e-02   p_cons 6.898026e-04   p_joint 3.621711e-04

Joint ci ratio: 1.177436e-01	ci left: 3.418859e-04	ci right 3.849736e-04	k: 1107	n:3050000
Cons ci ratio: 8.543057e-02	ci left: 6.603603e-04	ci right 7.196107e-04	k: 2103	n:3050000
KS ci ratio: 1.359642e-02	ci left: 2.635009e-02	ci right 2.671113e-02	k: 80917	n:3050000
SMAD4   3050000 perm   4861 sec   (627 perm/sec)   p_kst 2.653016e-02   p_cons 6.895082e-04   p_joint 3.629508e-04

Joint ci ratio: 1.176375e-01	ci left: 3.414029e-04	ci right 3.843884e-04	k: 1109	n:3060000
Cons ci ratio: 8.524840e-02	ci left: 6.610807e-04	ci right 7.202630e-04	k: 2112	n:3060000
KS ci ratio: 1.357327e-02	ci left: 2.635387e-02	ci right 2.671434e-02	k: 81193	n:3060000
SMAD4   3060000 perm   4890 sec   (626 perm/sec)   p_kst 2.653366e-02   p_cons 6.901961e-04   p_joint 3.624183e-04

Joint ci ratio: 1.173208e-01	ci left: 3.421879e-04	ci right 3.851481e-04	k: 1115	n:3070000
Cons ci ratio: 8.516787e-02	ci left: 6.602025e-04	ci right 7.192475e-04	k: 2116	n:3070000
KS ci ratio: 1.355177e-02	ci left: 2.635178e-02	ci right 2.671165e-02	k: 81451	n:3070000
SMAD4   3070000 perm   4919 sec   (624 perm/sec)   p_kst 2.653127e-02   p_cons 6.892508e-04   p_joint 3.631922e-04

Joint ci ratio: 1.171111e-01	ci left: 3.423375e-04	ci right 3.852344e-04	k: 1119	n:3080000
Cons ci ratio: 8.502741e-02	ci left: 6.602833e-04	ci right 7.192334e-04	k: 2123	n:3080000
KS ci ratio: 1.352910e-02	ci left: 2.635456e-02	ci right 2.671386e-02	k: 81724	n:3080000
SMAD4   3080000 perm   4947 sec   (623 perm/sec)   p_kst 2.653377e-02   p_cons 6.892857e-04   p_joint 3.633117e-04

Joint ci ratio: 1.169546e-01	ci left: 3.421721e-04	ci right 3.849869e-04	k: 1122	n:3090000
Cons ci ratio: 8.484781e-02	ci left: 6.609973e-04	ci right 7.198802e-04	k: 2132	n:3090000
KS ci ratio: 1.350773e-02	ci left: 2.635281e-02	ci right 2.671151e-02	k: 81983	n:3090000
SMAD4   3090000 perm   4976 sec   (621 perm/sec)   p_kst 2.653172e-02   p_cons 6.899676e-04   p_joint 3.631068e-04

Joint ci ratio: 1.169026e-01	ci left: 3.413814e-04	ci right 3.840771e-04	k: 1123	n:3100000
Cons ci ratio: 8.462981e-02	ci left: 6.623382e-04	ci right 7.211816e-04	k: 2143	n:3100000
KS ci ratio: 1.348738e-02	ci left: 2.634753e-02	ci right 2.670562e-02	k: 82231	n:3100000
SMAD4   3100000 perm   5006 sec   (619 perm/sec)   p_kst 2.652613e-02   p_cons 6.912903e-04   p_joint 3.622581e-04

Joint ci ratio: 1.168507e-01	ci left: 3.405959e-04	ci right 3.831731e-04	k: 1124	n:3110000
Cons ci ratio: 8.453133e-02	ci left: 6.617822e-04	ci right 7.205044e-04	k: 2148	n:3110000
KS ci ratio: 1.346470e-02	ci left: 2.635158e-02	ci right 2.670911e-02	k: 82508	n:3110000
SMAD4   3110000 perm   5035 sec   (618 perm/sec)   p_kst 2.652990e-02   p_cons 6.906752e-04   p_joint 3.614148e-04

Joint ci ratio: 1.166435e-01	ci left: 3.407488e-04	ci right 3.832644e-04	k: 1128	n:3120000
Cons ci ratio: 8.429623e-02	ci left: 6.634261e-04	ci right 7.221224e-04	k: 2160	n:3120000
KS ci ratio: 1.344271e-02	ci left: 2.635336e-02	ci right 2.671034e-02	k: 82778	n:3120000
SMAD4   3120000 perm   5065 sec   (616 perm/sec)   p_kst 2.653141e-02   p_cons 6.923077e-04   p_joint 3.615385e-04

Joint ci ratio: 1.164888e-01	ci left: 3.405907e-04	ci right 3.830263e-04	k: 1131	n:3130000
Cons ci ratio: 8.419891e-02	ci left: 6.628703e-04	ci right 7.214464e-04	k: 2165	n:3130000
KS ci ratio: 1.342075e-02	ci left: 2.635546e-02	ci right 2.671187e-02	k: 83049	n:3130000
SMAD4   3130000 perm   5094 sec   (614 perm/sec)   p_kst 2.653323e-02   p_cons 6.916933e-04   p_joint 3.613419e-04

Joint ci ratio: 1.163861e-01	ci left: 3.401244e-04	ci right 3.824620e-04	k: 1133	n:3140000
Cons ci ratio: 8.402449e-02	ci left: 6.635652e-04	ci right 7.220753e-04	k: 2174	n:3140000
KS ci ratio: 1.340120e-02	ci left: 2.634865e-02	ci right 2.670445e-02	k: 83292	n:3140000
SMAD4   3140000 perm   5124 sec   (613 perm/sec)   p_kst 2.652611e-02   p_cons 6.923567e-04   p_joint 3.608280e-04

Joint ci ratio: 1.175851e-01	ci left: 3.319566e-04	ci right 3.737328e-04	k: 1110	n:3150000
Cons ci ratio: 8.392811e-02	ci left: 6.630126e-04	ci right 7.214036e-04	k: 2179	n:3150000
KS ci ratio: 1.337838e-02	ci left: 2.635486e-02	ci right 2.671013e-02	k: 83576	n:3150000
SMAD4   3150000 perm   5154 sec   (611 perm/sec)   p_kst 2.653206e-02   p_cons 6.917460e-04   p_joint 3.523810e-04

Joint ci ratio: 1.181182e-01	ci left: 3.278348e-04	ci right 3.692923e-04	k: 1100	n:3160000
Cons ci ratio: 8.367889e-02	ci left: 6.649422e-04	ci right 7.233208e-04	k: 2192	n:3160000
KS ci ratio: 1.335386e-02	ci left: 2.636798e-02	ci right 2.672277e-02	k: 83882	n:3160000
SMAD4   3160000 perm   5184 sec   (610 perm/sec)   p_kst 2.654494e-02   p_cons 6.936709e-04   p_joint 3.481013e-04

Joint ci ratio: 1.179576e-01	ci left: 3.277190e-04	ci right 3.691017e-04	k: 1103	n:3170000
Cons ci ratio: 8.354566e-02	ci left: 6.650067e-04	ci right 7.232934e-04	k: 2199	n:3170000
KS ci ratio: 1.333648e-02	ci left: 2.635396e-02	ci right 2.670810e-02	k: 84102	n:3170000
SMAD4   3170000 perm   5215 sec   (608 perm/sec)   p_kst 2.653060e-02   p_cons 6.936909e-04   p_joint 3.479495e-04

Joint ci ratio: 1.176913e-01	ci left: 3.282145e-04	ci right 3.695596e-04	k: 1108	n:3180000
Cons ci ratio: 8.346985e-02	ci left: 6.641470e-04	ci right 7.223030e-04	k: 2203	n:3180000
KS ci ratio: 1.331301e-02	ci left: 2.636386e-02	ci right 2.671750e-02	k: 84398	n:3180000
SMAD4   3180000 perm   5245 sec   (606 perm/sec)   p_kst 2.654025e-02   p_cons 6.927673e-04   p_joint 3.484277e-04

Joint ci ratio: 1.173742e-01	ci left: 3.290112e-04	ci right 3.703373e-04	k: 1114	n:3190000
Cons ci ratio: 8.328110e-02	ci left: 6.651345e-04	ci right 7.232388e-04	k: 2213	n:3190000
KS ci ratio: 1.328982e-02	ci left: 2.637307e-02	ci right 2.672622e-02	k: 84692	n:3190000
SMAD4   3190000 perm   5275 sec   (605 perm/sec)   p_kst 2.654922e-02   p_cons 6.937304e-04   p_joint 3.492163e-04

Joint ci ratio: 1.172166e-01	ci left: 3.288930e-04	ci right 3.701449e-04	k: 1117	n:3200000
Cons ci ratio: 8.313103e-02	ci left: 6.655040e-04	ci right 7.235307e-04	k: 2221	n:3200000
KS ci ratio: 1.326788e-02	ci left: 2.637787e-02	ci right 2.673049e-02	k: 84972	n:3200000
SMAD4   3200000 perm   5305 sec   (603 perm/sec)   p_kst 2.655375e-02   p_cons 6.940625e-04   p_joint 3.490625e-04

Joint ci ratio: 1.191514e-01	ci left: 3.169849e-04	ci right 3.574457e-04	k: 1081	n:3210000
Cons ci ratio: 8.600661e-02	ci left: 6.189088e-04	ci right 6.748332e-04	k: 2075	n:3210000
KS ci ratio: 1.324748e-02	ci left: 2.637704e-02	ci right 2.672911e-02	k: 85234	n:3210000
SMAD4   3210000 perm   5336 sec   (602 perm/sec)   p_kst 2.655265e-02   p_cons 6.464174e-04   p_joint 3.367601e-04

Joint ci ratio: 1.188224e-01	ci left: 3.178083e-04	ci right 3.582544e-04	k: 1087	n:3220000
Cons ci ratio: 8.588260e-02	ci left: 6.188100e-04	ci right 6.746409e-04	k: 2081	n:3220000
KS ci ratio: 1.322749e-02	ci left: 2.637499e-02	ci right 2.672649e-02	k: 85492	n:3220000
SMAD4   3220000 perm   5366 sec   (600 perm/sec)   p_kst 2.655031e-02   p_cons 6.462733e-04   p_joint 3.375776e-04

Joint ci ratio: 1.186589e-01	ci left: 3.177256e-04	ci right 3.581016e-04	k: 1090	n:3230000
Cons ci ratio: 8.577968e-02	ci left: 6.184090e-04	ci right 6.741334e-04	k: 2086	n:3230000
KS ci ratio: 1.320403e-02	ci left: 2.638683e-02	ci right 2.673786e-02	k: 85795	n:3230000
SMAD4   3230000 perm   5397 sec   (598 perm/sec)   p_kst 2.656192e-02   p_cons 6.458204e-04   p_joint 3.374613e-04

Joint ci ratio: 1.184419e-01	ci left: 3.179430e-04	ci right 3.582675e-04	k: 1094	n:3240000
Cons ci ratio: 8.559528e-02	ci left: 6.192186e-04	ci right 6.748900e-04	k: 2095	n:3240000
KS ci ratio: 1.318251e-02	ci left: 2.639152e-02	ci right 2.674204e-02	k: 86075	n:3240000
SMAD4   3240000 perm   5427 sec   (597 perm/sec)   p_kst 2.656636e-02   p_cons 6.466049e-04   p_joint 3.376543e-04

Joint ci ratio: 1.182262e-01	ci left: 3.181590e-04	ci right 3.584323e-04	k: 1098	n:3250000
Cons ci ratio: 8.547304e-02	ci left: 6.191200e-04	ci right 6.746991e-04	k: 2101	n:3250000
KS ci ratio: 1.316273e-02	ci left: 2.638975e-02	ci right 2.673971e-02	k: 86334	n:3250000
SMAD4   3250000 perm   5458 sec   (595 perm/sec)   p_kst 2.656431e-02   p_cons 6.464615e-04   p_joint 3.378462e-04

Joint ci ratio: 1.188226e-01	ci left: 3.139088e-04	ci right 3.538587e-04	k: 1087	n:3260000
Cons ci ratio: 8.525021e-02	ci left: 6.205230e-04	ci right 6.760757e-04	k: 2112	n:3260000
KS ci ratio: 1.314204e-02	ci left: 2.639196e-02	ci right 2.674140e-02	k: 86606	n:3260000
SMAD4   3260000 perm   5489 sec   (594 perm/sec)   p_kst 2.656626e-02   p_cons 6.478528e-04   p_joint 3.334356e-04

Joint ci ratio: 1.187681e-01	ci left: 3.132456e-04	ci right 3.530914e-04	k: 1088	n:3270000
Cons ci ratio: 8.512944e-02	ci left: 6.204212e-04	ci right 6.758821e-04	k: 2118	n:3270000
KS ci ratio: 1.312213e-02	ci left: 2.639141e-02	ci right 2.674031e-02	k: 86869	n:3270000
SMAD4   3270000 perm   5520 sec   (592 perm/sec)   p_kst 2.656544e-02   p_cons 6.477064e-04   p_joint 3.327217e-04

Joint ci ratio: 1.198183e-01	ci left: 3.066707e-04	ci right 3.460495e-04	k: 1069	n:3280000
Cons ci ratio: 8.500918e-02	ci left: 6.203200e-04	ci right 6.756897e-04	k: 2124	n:3280000
KS ci ratio: 1.310332e-02	ci left: 2.638692e-02	ci right 2.673526e-02	k: 87119	n:3280000
SMAD4   3280000 perm   5551 sec   (591 perm/sec)   p_kst 2.656067e-02   p_cons 6.475610e-04   p_joint 3.259146e-04

Joint ci ratio: 1.197065e-01	ci left: 3.063282e-04	ci right 3.456238e-04	k: 1071	n:3290000
Cons ci ratio: 8.488942e-02	ci left: 6.202195e-04	ci right 6.754983e-04	k: 2130	n:3290000
KS ci ratio: 1.308321e-02	ci left: 2.638791e-02	ci right 2.673572e-02	k: 87387	n:3290000
SMAD4   3290000 perm   5582 sec   (589 perm/sec)   p_kst 2.656140e-02   p_cons 6.474164e-04   p_joint 3.255319e-04

Joint ci ratio: 1.195950e-01	ci left: 3.059879e-04	ci right 3.452007e-04	k: 1073	n:3300000
Cons ci ratio: 8.479003e-02	ci left: 6.198231e-04	ci right 6.749987e-04	k: 2135	n:3300000
KS ci ratio: 1.306342e-02	ci left: 2.638799e-02	ci right 2.673527e-02	k: 87652	n:3300000
SMAD4   3300000 perm   5613 sec   (588 perm/sec)   p_kst 2.656121e-02   p_cons 6.469697e-04   p_joint 3.251515e-04

Joint ci ratio: 1.194839e-01	ci left: 3.056496e-04	ci right 3.447801e-04	k: 1075	n:3310000
Cons ci ratio: 8.469098e-02	ci left: 6.194290e-04	ci right 6.745020e-04	k: 2140	n:3310000
KS ci ratio: 1.304158e-02	ci left: 2.639650e-02	ci right 2.674330e-02	k: 87945	n:3310000
SMAD4   3310000 perm   5644 sec   (586 perm/sec)   p_kst 2.656949e-02   p_cons 6.465257e-04   p_joint 3.247734e-04

Joint ci ratio: 1.193730e-01	ci left: 3.053134e-04	ci right 3.443620e-04	k: 1077	n:3320000
Cons ci ratio: 8.455286e-02	ci left: 6.196271e-04	ci right 6.746234e-04	k: 2147	n:3320000
KS ci ratio: 1.302221e-02	ci left: 2.639565e-02	ci right 2.674192e-02	k: 88207	n:3320000
SMAD4   3320000 perm   5675 sec   (585 perm/sec)   p_kst 2.656837e-02   p_cons 6.466867e-04   p_joint 3.243976e-04

Joint ci ratio: 1.190421e-01	ci left: 3.061446e-04	ci right 3.451833e-04	k: 1083	n:3330000
Cons ci ratio: 8.445465e-02	ci left: 6.192361e-04	ci right 6.741307e-04	k: 2152	n:3330000
KS ci ratio: 1.300254e-02	ci left: 2.639630e-02	ci right 2.674206e-02	k: 88474	n:3330000
SMAD4   3330000 perm   5706 sec   (584 perm/sec)   p_kst 2.656877e-02   p_cons 6.462462e-04   p_joint 3.252252e-04

Joint ci ratio: 1.209548e-01	ci left: 2.953538e-04	ci right 3.336650e-04	k: 1049	n:3340000
Cons ci ratio: 8.441550e-02	ci left: 6.179683e-04	ci right 6.727238e-04	k: 2154	n:3340000
KS ci ratio: 1.298274e-02	ci left: 2.639785e-02	ci right 2.674309e-02	k: 88744	n:3340000
SMAD4   3340000 perm   5737 sec   (582 perm/sec)   p_kst 2.657006e-02   p_cons 6.449102e-04   p_joint 3.140719e-04

Joint ci ratio: 1.207250e-01	ci left: 2.956301e-04	ci right 3.338990e-04	k: 1053	n:3350000
Cons ci ratio: 8.433730e-02	ci left: 6.172924e-04	ci right 6.719349e-04	k: 2158	n:3350000
KS ci ratio: 1.296265e-02	ci left: 2.640087e-02	ci right 2.674562e-02	k: 89019	n:3350000
SMAD4   3350000 perm   5769 sec   (581 perm/sec)   p_kst 2.657284e-02   p_cons 6.441791e-04   p_joint 3.143284e-04

Joint ci ratio: 1.207251e-01	ci left: 2.947502e-04	ci right 3.329053e-04	k: 1053	n:3360000
Cons ci ratio: 8.425931e-02	ci left: 6.166206e-04	ci right 6.711507e-04	k: 2162	n:3360000
KS ci ratio: 1.294489e-02	ci left: 2.639498e-02	ci right 2.673917e-02	k: 89264	n:3360000
SMAD4   3360000 perm   5800 sec   (579 perm/sec)   p_kst 2.656667e-02   p_cons 6.434524e-04   p_joint 3.133929e-04

Joint ci ratio: 1.212441e-01	ci left: 2.912857e-04	ci right 3.291661e-04	k: 1044	n:3370000
Cons ci ratio: 8.420098e-02	ci left: 6.156623e-04	ci right 6.700681e-04	k: 2165	n:3370000
KS ci ratio: 1.292528e-02	ci left: 2.639681e-02	ci right 2.674050e-02	k: 89535	n:3370000
SMAD4   3370000 perm   5834 sec   (578 perm/sec)   p_kst 2.656825e-02   p_cons 6.424332e-04   p_joint 3.097923e-04

Joint ci ratio: 1.210704e-01	ci left: 2.912846e-04	ci right 3.291067e-04	k: 1047	n:3380000
Cons ci ratio: 8.408461e-02	ci left: 6.155786e-04	ci right 6.698982e-04	k: 2171	n:3380000
KS ci ratio: 1.290641e-02	ci left: 2.639598e-02	ci right 2.673916e-02	k: 89797	n:3380000
SMAD4   3380000 perm   5866 sec   (576 perm/sec)   p_kst 2.656716e-02   p_cons 6.423077e-04   p_joint 3.097633e-04

Joint ci ratio: 1.208975e-01	ci left: 2.912836e-04	ci right 3.290476e-04	k: 1050	n:3390000
Cons ci ratio: 8.396872e-02	ci left: 6.154955e-04	ci right 6.697291e-04	k: 2177	n:3390000
KS ci ratio: 1.288683e-02	ci left: 2.639838e-02	ci right 2.674107e-02	k: 90070	n:3390000
SMAD4   3390000 perm   5898 sec   (575 perm/sec)   p_kst 2.656932e-02   p_cons 6.421829e-04   p_joint 3.097345e-04

Joint ci ratio: 1.207827e-01	ci left: 2.909973e-04	ci right 3.286858e-04	k: 1052	n:3400000
Cons ci ratio: 8.381491e-02	ci left: 6.159888e-04	ci right 6.701616e-04	k: 2185	n:3400000
KS ci ratio: 1.286769e-02	ci left: 2.639931e-02	ci right 2.674150e-02	k: 90338	n:3400000
SMAD4   3400000 perm   5931 sec   (573 perm/sec)   p_kst 2.657000e-02   p_cons 6.426471e-04   p_joint 3.094118e-04

Joint ci ratio: 1.205539e-01	ci left: 2.912815e-04	ci right 3.289303e-04	k: 1056	n:3410000
Cons ci ratio: 8.373836e-02	ci left: 6.153308e-04	ci right 6.693940e-04	k: 2189	n:3410000
KS ci ratio: 1.284806e-02	ci left: 2.640257e-02	ci right 2.674427e-02	k: 90614	n:3410000
SMAD4   3410000 perm   5963 sec   (572 perm/sec)   p_kst 2.657302e-02   p_cons 6.419355e-04   p_joint 3.096774e-04

Joint ci ratio: 1.203832e-01	ci left: 2.912806e-04	ci right 3.288722e-04	k: 1059	n:3420000
Cons ci ratio: 8.360484e-02	ci left: 6.155356e-04	ci right 6.695263e-04	k: 2196	n:3420000
KS ci ratio: 1.283142e-02	ci left: 2.639416e-02	ci right 2.673530e-02	k: 90850	n:3420000
SMAD4   3420000 perm   5995 sec   (570 perm/sec)   p_kst 2.656433e-02   p_cons 6.421053e-04   p_joint 3.096491e-04

Joint ci ratio: 1.203832e-01	ci left: 2.904314e-04	ci right 3.279134e-04	k: 1059	n:3430000
Cons ci ratio: 8.350989e-02	ci left: 6.151683e-04	ci right 6.690625e-04	k: 2201	n:3430000
KS ci ratio: 1.281376e-02	ci left: 2.639015e-02	ci right 2.673077e-02	k: 91101	n:3430000
SMAD4   3430000 perm   6028 sec   (569 perm/sec)   p_kst 2.656006e-02   p_cons 6.416910e-04   p_joint 3.087464e-04

Joint ci ratio: 1.202132e-01	ci left: 2.904330e-04	ci right 3.278584e-04	k: 1062	n:3440000
Cons ci ratio: 8.339635e-02	ci left: 6.150878e-04	ci right 6.688981e-04	k: 2207	n:3440000
KS ci ratio: 1.279459e-02	ci left: 2.639254e-02	ci right 2.673268e-02	k: 91374	n:3440000
SMAD4   3440000 perm   6060 sec   (568 perm/sec)   p_kst 2.656221e-02   p_cons 6.415698e-04   p_joint 3.087209e-04

Joint ci ratio: 1.199315e-01	ci left: 2.909969e-04	ci right 3.284009e-04	k: 1067	n:3450000
Cons ci ratio: 8.330210e-02	ci left: 6.147240e-04	ci right 6.684387e-04	k: 2212	n:3450000
KS ci ratio: 1.277529e-02	ci left: 2.639578e-02	ci right 2.673545e-02	k: 91650	n:3450000
SMAD4   3450000 perm   6093 sec   (566 perm/sec)   p_kst 2.656522e-02   p_cons 6.411594e-04   p_joint 3.092754e-04

Joint ci ratio: 1.197634e-01	ci left: 2.909969e-04	ci right 3.283448e-04	k: 1070	n:3460000
Cons ci ratio: 8.317066e-02	ci left: 6.149283e-04	ci right 6.685721e-04	k: 2219	n:3460000
KS ci ratio: 1.275572e-02	ci left: 2.640045e-02	ci right 2.673965e-02	k: 91931	n:3460000
SMAD4   3460000 perm   6124 sec   (565 perm/sec)   p_kst 2.656965e-02   p_cons 6.413295e-04   p_joint 3.092486e-04

Joint ci ratio: 1.196517e-01	ci left: 2.907174e-04	ci right 3.279922e-04	k: 1072	n:3470000
Cons ci ratio: 8.302119e-02	ci left: 6.154138e-04	ci right 6.689987e-04	k: 2227	n:3470000
KS ci ratio: 1.273880e-02	ci left: 2.639475e-02	ci right 2.673342e-02	k: 92176	n:3470000
SMAD4   3470000 perm   6158 sec   (564 perm/sec)   p_kst 2.656369e-02   p_cons 6.417867e-04   p_joint 3.089337e-04

Joint ci ratio: 1.194293e-01	ci left: 2.909971e-04	ci right 3.282335e-04	k: 1076	n:3480000
Cons ci ratio: 8.298400e-02	ci left: 6.142081e-04	ci right 6.676629e-04	k: 2229	n:3480000
KS ci ratio: 1.272116e-02	ci left: 2.639223e-02	ci right 2.673040e-02	k: 92432	n:3480000
SMAD4   3480000 perm   6190 sec   (562 perm/sec)   p_kst 2.656092e-02   p_cons 6.405172e-04   p_joint 3.091954e-04

Joint ci ratio: 1.190980e-01	ci left: 2.918312e-04	ci right 3.290634e-04	k: 1082	n:3490000
Cons ci ratio: 8.279852e-02	ci left: 6.152541e-04	ci right 6.686746e-04	k: 2239	n:3490000
KS ci ratio: 1.270205e-02	ci left: 2.639601e-02	ci right 2.673372e-02	k: 92710	n:3490000
SMAD4   3490000 perm   6223 sec   (561 perm/sec)   p_kst 2.656447e-02   p_cons 6.415473e-04   p_joint 3.100287e-04

Joint ci ratio: 1.190431e-01	ci left: 2.912746e-04	ci right 3.284175e-04	k: 1083	n:3500000
Cons ci ratio: 8.272472e-02	ci left: 6.146155e-04	ci right 6.679306e-04	k: 2243	n:3500000
KS ci ratio: 1.268247e-02	ci left: 2.640205e-02	ci right 2.673931e-02	k: 92996	n:3500000
SMAD4   3500000 perm   6256 sec   (559 perm/sec)   p_kst 2.657029e-02   p_cons 6.408571e-04   p_joint 3.094286e-04

Joint ci ratio: 1.189882e-01	ci left: 2.907212e-04	ci right 3.277752e-04	k: 1084	n:3510000
Cons ci ratio: 8.265112e-02	ci left: 6.139805e-04	ci right 6.671908e-04	k: 2247	n:3510000
KS ci ratio: 1.266521e-02	ci left: 2.639896e-02	ci right 2.673572e-02	k: 93250	n:3510000
SMAD4   3510000 perm   6290 sec   (558 perm/sec)   p_kst 2.656695e-02   p_cons 6.401709e-04   p_joint 3.088319e-04

Joint ci ratio: 1.189335e-01	ci left: 2.901709e-04	ci right 3.271365e-04	k: 1085	n:3520000
Cons ci ratio: 8.254104e-02	ci left: 6.139055e-04	ci right 6.670351e-04	k: 2253	n:3520000
KS ci ratio: 1.264676e-02	ci left: 2.640100e-02	ci right 2.673728e-02	k: 93522	n:3520000
SMAD4   3520000 perm   6324 sec   (557 perm/sec)   p_kst 2.656875e-02   p_cons 6.400568e-04   p_joint 3.082386e-04

Joint ci ratio: 1.188788e-01	ci left: 2.896237e-04	ci right 3.265015e-04	k: 1086	n:3530000
Cons ci ratio: 8.243141e-02	ci left: 6.138311e-04	ci right 6.668803e-04	k: 2259	n:3530000
KS ci ratio: 1.262792e-02	ci left: 2.640499e-02	ci right 2.674083e-02	k: 93801	n:3530000
SMAD4   3530000 perm   6357 sec   (555 perm/sec)   p_kst 2.657252e-02   p_cons 6.399433e-04   p_joint 3.076487e-04

Joint ci ratio: 1.187151e-01	ci left: 2.896278e-04	ci right 3.264518e-04	k: 1089	n:3540000
Cons ci ratio: 8.234039e-02	ci left: 6.134804e-04	ci right 6.664380e-04	k: 2264	n:3540000
KS ci ratio: 1.260853e-02	ci left: 2.641150e-02	ci right 2.674690e-02	k: 94089	n:3540000
SMAD4   3540000 perm   6390 sec   (554 perm/sec)   p_kst 2.657881e-02   p_cons 6.395480e-04   p_joint 3.076271e-04

Joint ci ratio: 1.186607e-01	ci left: 2.890853e-04	ci right 3.258223e-04	k: 1090	n:3550000
Cons ci ratio: 8.226781e-02	ci left: 6.128559e-04	ci right 6.657106e-04	k: 2268	n:3550000
KS ci ratio: 1.259109e-02	ci left: 2.641039e-02	ci right 2.674531e-02	k: 94350	n:3550000
SMAD4   3550000 perm   6423 sec   (553 perm/sec)   p_kst 2.657746e-02   p_cons 6.388732e-04   p_joint 3.070423e-04

Joint ci ratio: 1.183897e-01	ci left: 2.896361e-04	ci right 3.263532e-04	k: 1095	n:3560000
Cons ci ratio: 8.215926e-02	ci left: 6.127851e-04	ci right 6.655607e-04	k: 2274	n:3560000
KS ci ratio: 1.257270e-02	ci left: 2.641349e-02	ci right 2.674795e-02	k: 94626	n:3560000
SMAD4   3560000 perm   6457 sec   (551 perm/sec)   p_kst 2.658034e-02   p_cons 6.387640e-04   p_joint 3.075843e-04

Joint ci ratio: 1.155256e-01	ci left: 3.037805e-04	ci right 3.412955e-04	k: 1150	n:3570000
Cons ci ratio: 8.199719e-02	ci left: 6.135379e-04	ci right 6.662691e-04	k: 2283	n:3570000
KS ci ratio: 1.255377e-02	ci left: 2.641908e-02	ci right 2.675311e-02	k: 94911	n:3570000
SMAD4   3570000 perm   6490 sec   (550 perm/sec)   p_kst 2.658571e-02   p_cons 6.394958e-04   p_joint 3.221289e-04

Joint ci ratio: 1.153254e-01	ci left: 3.040170e-04	ci right 3.414917e-04	k: 1154	n:3580000
Cons ci ratio: 8.188971e-02	ci left: 6.134657e-04	ci right 6.661183e-04	k: 2289	n:3580000
KS ci ratio: 1.253730e-02	ci left: 2.641490e-02	ci right 2.674843e-02	k: 95161	n:3580000
SMAD4   3580000 perm   6524 sec   (549 perm/sec)   p_kst 2.658128e-02   p_cons 6.393855e-04   p_joint 3.223464e-04

Joint ci ratio: 1.151262e-01	ci left: 3.042523e-04	ci right 3.416868e-04	k: 1158	n:3590000
Cons ci ratio: 8.176483e-02	ci left: 6.136669e-04	ci right 6.662526e-04	k: 2296	n:3590000
KS ci ratio: 1.251894e-02	ci left: 2.641880e-02	ci right 2.675189e-02	k: 95440	n:3590000
SMAD4   3590000 perm   6558 sec   (547 perm/sec)   p_kst 2.658496e-02   p_cons 6.395543e-04   p_joint 3.225627e-04

Joint ci ratio: 1.149280e-01	ci left: 3.044863e-04	ci right 3.418807e-04	k: 1162	n:3600000
Cons ci ratio: 8.167600e-02	ci left: 6.133228e-04	ci right 6.658192e-04	k: 2301	n:3600000
KS ci ratio: 1.250019e-02	ci left: 2.642461e-02	ci right 2.675727e-02	k: 95726	n:3600000
SMAD4   3600000 perm   6592 sec   (546 perm/sec)   p_kst 2.659056e-02   p_cons 6.391667e-04   p_joint 3.227778e-04

Joint ci ratio: 1.148787e-01	ci left: 3.039118e-04	ci right 3.412186e-04	k: 1163	n:3610000
Cons ci ratio: 8.160516e-02	ci left: 6.127092e-04	ci right 6.651055e-04	k: 2305	n:3610000
KS ci ratio: 1.248339e-02	ci left: 2.642265e-02	ci right 2.675484e-02	k: 95984	n:3610000
SMAD4   3610000 perm   6626 sec   (545 perm/sec)   p_kst 2.658837e-02   p_cons 6.385042e-04   p_joint 3.221607e-04

Joint ci ratio: 1.148787e-01	ci left: 3.030723e-04	ci right 3.402761e-04	k: 1163	n:3620000
Cons ci ratio: 8.141116e-02	ci left: 6.139934e-04	ci right 6.663687e-04	k: 2316	n:3620000
KS ci ratio: 1.246553e-02	ci left: 2.642539e-02	ci right 2.675713e-02	k: 96259	n:3620000
SMAD4   3620000 perm   6660 sec   (544 perm/sec)   p_kst 2.659088e-02   p_cons 6.397790e-04   p_joint 3.212707e-04

Joint ci ratio: 1.148295e-01	ci left: 3.025050e-04	ci right 3.396221e-04	k: 1164	n:3630000
Cons ci ratio: 8.139366e-02	ci left: 6.125718e-04	ci right 6.648141e-04	k: 2317	n:3630000
KS ci ratio: 1.244947e-02	ci left: 2.642098e-02	ci right 2.675223e-02	k: 96508	n:3630000
SMAD4   3630000 perm   6695 sec   (542 perm/sec)   p_kst 2.658623e-02   p_cons 6.382920e-04   p_joint 3.206612e-04

Joint ci ratio: 1.146819e-01	ci left: 3.024744e-04	ci right 3.395368e-04	k: 1167	n:3640000
Cons ci ratio: 8.123608e-02	ci left: 6.133112e-04	ci right 6.655105e-04	k: 2326	n:3640000
KS ci ratio: 1.243558e-02	ci left: 2.640782e-02	ci right 2.673854e-02	k: 96725	n:3640000
SMAD4   3640000 perm   6729 sec   (541 perm/sec)   p_kst 2.657280e-02   p_cons 6.390110e-04   p_joint 3.206044e-04

Joint ci ratio: 1.144372e-01	ci left: 3.029763e-04	ci right 3.400157e-04	k: 1172	n:3650000
Cons ci ratio: 8.109678e-02	ci left: 6.137782e-04	ci right 6.659234e-04	k: 2334	n:3650000
KS ci ratio: 1.241885e-02	ci left: 2.640675e-02	ci right 2.673701e-02	k: 96986	n:3650000
SMAD4   3650000 perm   6763 sec   (540 perm/sec)   p_kst 2.657151e-02   p_cons 6.394521e-04   p_joint 3.210959e-04

Joint ci ratio: 1.141940e-01	ci left: 3.034756e-04	ci right 3.404919e-04	k: 1177	n:3660000
Cons ci ratio: 8.090638e-02	ci left: 6.150458e-04	ci right 6.671703e-04	k: 2345	n:3660000
KS ci ratio: 1.240244e-02	ci left: 2.640460e-02	ci right 2.673440e-02	k: 97243	n:3660000
SMAD4   3660000 perm   6797 sec   (538 perm/sec)   p_kst 2.656913e-02   p_cons 6.407104e-04   p_joint 3.215847e-04

Joint ci ratio: 1.150770e-01	ci left: 2.978846e-04	ci right 3.345189e-04	k: 1159	n:3670000
Cons ci ratio: 8.080312e-02	ci left: 6.149717e-04	ci right 6.670203e-04	k: 2351	n:3670000
KS ci ratio: 1.238714e-02	ci left: 2.639812e-02	ci right 2.672742e-02	k: 97484	n:3670000
SMAD4   3670000 perm   6831 sec   (537 perm/sec)   p_kst 2.656240e-02   p_cons 6.405995e-04   p_joint 3.158038e-04

Joint ci ratio: 1.148297e-01	ci left: 2.983948e-04	ci right 3.350077e-04	k: 1164	n:3680000
Cons ci ratio: 8.070026e-02	ci left: 6.148981e-04	ci right 6.668711e-04	k: 2357	n:3680000
KS ci ratio: 1.237132e-02	ci left: 2.639411e-02	ci right 2.672294e-02	k: 97734	n:3680000
SMAD4   3680000 perm   6865 sec   (536 perm/sec)   p_kst 2.655815e-02   p_cons 6.404891e-04   p_joint 3.163043e-04

Joint ci ratio: 1.147805e-01	ci left: 2.978494e-04	ci right 3.343786e-04	k: 1165	n:3690000
Cons ci ratio: 8.061485e-02	ci left: 6.145594e-04	ci right 6.664462e-04	k: 2362	n:3690000
KS ci ratio: 1.235568e-02	ci left: 2.638958e-02	ci right 2.671794e-02	k: 97982	n:3690000
SMAD4   3690000 perm   6900 sec   (535 perm/sec)   p_kst 2.655339e-02   p_cons 6.401084e-04   p_joint 3.157182e-04

Joint ci ratio: 1.146822e-01	ci left: 2.975694e-04	ci right 3.340309e-04	k: 1167	n:3700000
Cons ci ratio: 8.058080e-02	ci left: 6.134281e-04	ci right 6.651964e-04	k: 2364	n:3700000
KS ci ratio: 1.233972e-02	ci left: 2.638670e-02	ci right 2.671459e-02	k: 98236	n:3700000
SMAD4   3700000 perm   6936 sec   (533 perm/sec)   p_kst 2.655027e-02   p_cons 6.389189e-04   p_joint 3.154054e-04

Joint ci ratio: 1.142914e-01	ci left: 2.988619e-04	ci right 3.353486e-04	k: 1175	n:3710000
Cons ci ratio: 8.051277e-02	ci left: 6.128311e-04	ci right 6.645033e-04	k: 2368	n:3710000
KS ci ratio: 1.232041e-02	ci left: 2.639807e-02	ci right 2.672558e-02	k: 98543	n:3710000
SMAD4   3710000 perm   6971 sec   (532 perm/sec)   p_kst 2.656146e-02   p_cons 6.382749e-04   p_joint 3.167116e-04

Joint ci ratio: 1.140975e-01	ci left: 2.991031e-04	ci right 3.355531e-04	k: 1179	n:3720000
Cons ci ratio: 8.041101e-02	ci left: 6.127641e-04	ci right 6.643624e-04	k: 2374	n:3720000
KS ci ratio: 1.230394e-02	ci left: 2.639786e-02	ci right 2.672493e-02	k: 98807	n:3720000
SMAD4   3720000 perm   7006 sec   (531 perm/sec)   p_kst 2.656102e-02   p_cons 6.381720e-04   p_joint 3.169355e-04

Joint ci ratio: 1.139527e-01	ci left: 2.990825e-04	ci right 3.354807e-04	k: 1182	n:3730000
Cons ci ratio: 8.025906e-02	ci left: 6.134857e-04	ci right 6.650426e-04	k: 2383	n:3730000
KS ci ratio: 1.228697e-02	ci left: 2.640005e-02	ci right 2.672669e-02	k: 99080	n:3730000
SMAD4   3730000 perm   7040 sec   (530 perm/sec)   p_kst 2.656300e-02   p_cons 6.388740e-04   p_joint 3.168901e-04

Joint ci ratio: 1.137606e-01	ci left: 2.993219e-04	ci right 3.356836e-04	k: 1186	n:3740000
Cons ci ratio: 8.015825e-02	ci left: 6.134175e-04	ci right 6.649008e-04	k: 2389	n:3740000
KS ci ratio: 1.227032e-02	ci left: 2.640117e-02	ci right 2.672738e-02	k: 99349	n:3740000
SMAD4   3740000 perm   7075 sec   (529 perm/sec)   p_kst 2.656390e-02   p_cons 6.387701e-04   p_joint 3.171123e-04

Joint ci ratio: 1.136649e-01	ci left: 2.990419e-04	ci right 3.353370e-04	k: 1188	n:3750000
Cons ci ratio: 8.012478e-02	ci left: 6.123044e-04	ci right 6.636718e-04	k: 2391	n:3750000
KS ci ratio: 1.225361e-02	ci left: 2.640281e-02	ci right 2.672859e-02	k: 99620	n:3750000
SMAD4   3750000 perm   7110 sec   (527 perm/sec)   p_kst 2.656533e-02   p_cons 6.376000e-04   p_joint 3.168000e-04

Joint ci ratio: 1.135694e-01	ci left: 2.987634e-04	ci right 3.349922e-04	k: 1190	n:3760000
Cons ci ratio: 7.999111e-02	ci left: 6.127610e-04	ci right 6.640769e-04	k: 2399	n:3760000
KS ci ratio: 1.223803e-02	ci left: 2.639993e-02	ci right 2.672526e-02	k: 99874	n:3760000
SMAD4   3760000 perm   7145 sec   (526 perm/sec)   p_kst 2.656223e-02   p_cons 6.380319e-04   p_joint 3.164894e-04

Joint ci ratio: 1.134266e-01	ci left: 2.987440e-04	ci right 3.349219e-04	k: 1193	n:3770000
Cons ci ratio: 7.989132e-02	ci left: 6.126953e-04	ci right 6.639388e-04	k: 2405	n:3770000
KS ci ratio: 1.222114e-02	ci left: 2.640289e-02	ci right 2.672781e-02	k: 100150	n:3770000
SMAD4   3770000 perm   7181 sec   (525 perm/sec)   p_kst 2.656499e-02   p_cons 6.379310e-04   p_joint 3.164456e-04

Joint ci ratio: 1.133792e-01	ci left: 2.982108e-04	ci right 3.343079e-04	k: 1194	n:3780000
Cons ci ratio: 7.980845e-02	ci left: 6.123707e-04	ci right 6.635315e-04	k: 2410	n:3780000
KS ci ratio: 1.220601e-02	ci left: 2.639872e-02	ci right 2.672317e-02	k: 100399	n:3780000
SMAD4   3780000 perm   7216 sec   (524 perm/sec)   p_kst 2.656058e-02   p_cons 6.375661e-04   p_joint 3.158730e-04

Joint ci ratio: 1.295048e-01	ci left: 2.260349e-04	ci right 2.575865e-04	k: 915	n:3790000
Cons ci ratio: 7.970933e-02	ci left: 6.123065e-04	ci right 6.633954e-04	k: 2416	n:3790000
KS ci ratio: 1.250298e-02	ci left: 2.512240e-02	ci right 2.543874e-02	k: 95812	n:3790000
SMAD4   3790000 perm   7251 sec   (523 perm/sec)   p_kst 2.528021e-02   p_cons 6.374670e-04   p_joint 2.414248e-04

Joint ci ratio: 1.293636e-01	ci left: 2.259494e-04	ci right 2.574520e-04	k: 917	n:3800000
Cons ci ratio: 7.954491e-02	ci left: 6.132744e-04	ci right 6.643336e-04	k: 2426	n:3800000
KS ci ratio: 1.248604e-02	ci left: 2.512450e-02	ci right 2.544043e-02	k: 96072	n:3800000
SMAD4   3800000 perm   7285 sec   (522 perm/sec)   p_kst 2.528211e-02   p_cons 6.384211e-04   p_joint 2.413158e-04

Joint ci ratio: 1.292230e-01	ci left: 2.258643e-04	ci right 2.573182e-04	k: 919	n:3810000
Cons ci ratio: 7.946311e-02	ci left: 6.129510e-04	ci right 6.639284e-04	k: 2431	n:3810000
KS ci ratio: 1.247030e-02	ci left: 2.512214e-02	ci right 2.543764e-02	k: 96315	n:3810000
SMAD4   3810000 perm   7320 sec   (520 perm/sec)   p_kst 2.527953e-02   p_cons 6.380577e-04   p_joint 2.412073e-04

Joint ci ratio: 1.290827e-01	ci left: 2.257797e-04	ci right 2.571850e-04	k: 921	n:3820000
Cons ci ratio: 7.934899e-02	ci left: 6.131425e-04	ci right 6.640592e-04	k: 2438	n:3820000
KS ci ratio: 1.245342e-02	ci left: 2.512448e-02	ci right 2.543959e-02	k: 96576	n:3820000
SMAD4   3820000 perm   7355 sec   (519 perm/sec)   p_kst 2.528168e-02   p_cons 6.382199e-04   p_joint 2.410995e-04

Joint ci ratio: 1.292933e-01	ci left: 2.244322e-04	ci right 2.557049e-04	k: 918	n:3830000
Cons ci ratio: 7.921916e-02	ci left: 6.135890e-04	ci right 6.644555e-04	k: 2446	n:3830000
KS ci ratio: 1.243675e-02	ci left: 2.512630e-02	ci right 2.544100e-02	k: 96835	n:3830000
SMAD4   3830000 perm   7391 sec   (518 perm/sec)   p_kst 2.528329e-02   p_cons 6.386423e-04   p_joint 2.396867e-04

Joint ci ratio: 1.290828e-01	ci left: 2.246037e-04	ci right 2.558455e-04	k: 921	n:3840000
Cons ci ratio: 7.904166e-02	ci left: 6.147990e-04	ci right 6.656464e-04	k: 2457	n:3840000
KS ci ratio: 1.242171e-02	ci left: 2.512187e-02	ci right 2.543613e-02	k: 97070	n:3840000
SMAD4   3840000 perm   7426 sec   (517 perm/sec)   p_kst 2.527865e-02   p_cons 6.398438e-04   p_joint 2.398438e-04

Joint ci ratio: 1.288733e-01	ci left: 2.247744e-04	ci right 2.559853e-04	k: 924	n:3850000
Cons ci ratio: 7.892934e-02	ci left: 6.149844e-04	ci right 6.657715e-04	k: 2464	n:3850000
KS ci ratio: 1.240627e-02	ci left: 2.511928e-02	ci right 2.543312e-02	k: 97312	n:3850000
SMAD4   3850000 perm   7463 sec   (516 perm/sec)   p_kst 2.527584e-02   p_cons 6.400000e-04   p_joint 2.400000e-04

Joint ci ratio: 1.297888e-01	ci left: 2.209331e-04	ci right 2.518454e-04	k: 911	n:3860000
Cons ci ratio: 7.880156e-02	ci left: 6.154228e-04	ci right 6.661601e-04	k: 2472	n:3860000
KS ci ratio: 1.239050e-02	ci left: 2.511826e-02	ci right 2.543168e-02	k: 97560	n:3860000
SMAD4   3860000 perm   7500 sec   (515 perm/sec)   p_kst 2.527461e-02   p_cons 6.404145e-04   p_joint 2.360104e-04

Joint ci ratio: 1.297177e-01	ci left: 2.206123e-04	ci right 2.514614e-04	k: 912	n:3870000
Cons ci ratio: 7.862683e-02	ci left: 6.166190e-04	ci right 6.673371e-04	k: 2483	n:3870000
KS ci ratio: 1.237382e-02	ci left: 2.512110e-02	ci right 2.543413e-02	k: 97823	n:3870000
SMAD4   3870000 perm   7536 sec   (514 perm/sec)   p_kst 2.527726e-02   p_cons 6.416021e-04   p_joint 2.356589e-04

Joint ci ratio: 1.295051e-01	ci left: 2.207918e-04	ci right 2.516116e-04	k: 915	n:3880000
Cons ci ratio: 7.856363e-02	ci left: 6.160405e-04	ci right 6.666683e-04	k: 2487	n:3880000
KS ci ratio: 1.235753e-02	ci left: 2.512265e-02	ci right 2.543528e-02	k: 98081	n:3880000
SMAD4   3880000 perm   7576 sec   (512 perm/sec)   p_kst 2.527861e-02   p_cons 6.409794e-04   p_joint 2.358247e-04

Joint ci ratio: 1.294345e-01	ci left: 2.204730e-04	ci right 2.512302e-04	k: 916	n:3890000
Cons ci ratio: 7.851634e-02	ci left: 6.152129e-04	ci right 6.657409e-04	k: 2490	n:3890000
KS ci ratio: 1.234349e-02	ci left: 2.511547e-02	ci right 2.542766e-02	k: 98305	n:3890000
SMAD4   3890000 perm   7613 sec   (511 perm/sec)   p_kst 2.527121e-02   p_cons 6.401028e-04   p_joint 2.354756e-04

Joint ci ratio: 1.291531e-01	ci left: 2.209001e-04	ci right 2.516448e-04	k: 920	n:3900000
Cons ci ratio: 7.848488e-02	ci left: 6.141381e-04	ci right 6.645568e-04	k: 2492	n:3900000
KS ci ratio: 1.232654e-02	ci left: 2.512009e-02	ci right 2.543190e-02	k: 98575	n:3900000
SMAD4   3900000 perm   7653 sec   (510 perm/sec)   p_kst 2.527564e-02   p_cons 6.389744e-04   p_joint 2.358974e-04

Joint ci ratio: 1.289433e-01	ci left: 2.210776e-04	ci right 2.517932e-04	k: 923	n:3910000
Cons ci ratio: 7.837492e-02	ci left: 6.143226e-04	ci right 6.646825e-04	k: 2499	n:3910000
KS ci ratio: 1.231190e-02	ci left: 2.511576e-02	ci right 2.542715e-02	k: 98810	n:3910000
SMAD4   3910000 perm   7691 sec   (508 perm/sec)   p_kst 2.527110e-02   p_cons 6.391304e-04   p_joint 2.360614e-04

Joint ci ratio: 1.286651e-01	ci left: 2.215012e-04	ci right 2.522041e-04	k: 927	n:3920000
Cons ci ratio: 7.832797e-02	ci left: 6.135058e-04	ci right 6.637672e-04	k: 2502	n:3920000
KS ci ratio: 1.229732e-02	ci left: 2.511145e-02	ci right 2.542241e-02	k: 99045	n:3920000
SMAD4   3920000 perm   7731 sec   (507 perm/sec)   p_kst 2.526658e-02   p_cons 6.382653e-04   p_joint 2.364796e-04

Joint ci ratio: 1.283886e-01	ci left: 2.219227e-04	ci right 2.526129e-04	k: 931	n:3930000
Cons ci ratio: 7.820308e-02	ci left: 6.139405e-04	ci right 6.641537e-04	k: 2510	n:3930000
KS ci ratio: 1.228063e-02	ci left: 2.511579e-02	ci right 2.542638e-02	k: 99314	n:3930000
SMAD4   3930000 perm   7768 sec   (506 perm/sec)   p_kst 2.527074e-02   p_cons 6.386768e-04   p_joint 2.368957e-04

Joint ci ratio: 1.283198e-01	ci left: 2.216051e-04	ci right 2.522337e-04	k: 932	n:3940000
Cons ci ratio: 7.812535e-02	ci left: 6.136265e-04	ci right 6.637619e-04	k: 2515	n:3940000
KS ci ratio: 1.226514e-02	ci left: 2.511556e-02	ci right 2.542575e-02	k: 99565	n:3940000
SMAD4   3940000 perm   7806 sec   (505 perm/sec)   p_kst 2.527030e-02   p_cons 6.383249e-04   p_joint 2.365482e-04

Joint ci ratio: 1.316059e-01	ci left: 2.097770e-04	ci right 2.395713e-04	k: 886	n:3950000
Cons ci ratio: 7.803237e-02	ci left: 6.135623e-04	ci right 6.636301e-04	k: 2521	n:3950000
KS ci ratio: 1.224808e-02	ci left: 2.512189e-02	ci right 2.543172e-02	k: 99842	n:3950000
SMAD4   3950000 perm   7845 sec   (504 perm/sec)   p_kst 2.527646e-02   p_cons 6.382278e-04   p_joint 2.243038e-04

Joint ci ratio: 1.315318e-01	ci left: 2.094914e-04	ci right 2.392272e-04	k: 887	n:3960000
Cons ci ratio: 7.789348e-02	ci left: 6.142414e-04	ci right 6.642713e-04	k: 2530	n:3960000
KS ci ratio: 1.223346e-02	ci left: 2.511861e-02	ci right 2.542804e-02	k: 100081	n:3960000
SMAD4   3960000 perm   7881 sec   (502 perm/sec)   p_kst 2.527298e-02   p_cons 6.388889e-04   p_joint 2.239899e-04

Joint ci ratio: 1.314578e-01	ci left: 2.092073e-04	ci right 2.388848e-04	k: 888	n:3970000
Cons ci ratio: 7.774002e-02	ci left: 6.151640e-04	ci right 6.651659e-04	k: 2540	n:3970000
KS ci ratio: 1.221516e-02	ci left: 2.513043e-02	ci right 2.543953e-02	k: 100380	n:3970000
SMAD4   3970000 perm   7921 sec   (501 perm/sec)   p_kst 2.528463e-02   p_cons 6.397985e-04   p_joint 2.236776e-04

Joint ci ratio: 1.313102e-01	ci left: 2.091677e-04	ci right 2.388036e-04	k: 890	n:3980000
Cons ci ratio: 7.760269e-02	ci left: 6.158358e-04	ci right 6.657999e-04	k: 2549	n:3980000
KS ci ratio: 1.219992e-02	ci left: 2.513016e-02	ci right 2.543887e-02	k: 100631	n:3980000
SMAD4   3980000 perm   7961 sec   (500 perm/sec)   p_kst 2.528417e-02   p_cons 6.404523e-04   p_joint 2.236181e-04

Joint ci ratio: 1.310897e-01	ci left: 2.093707e-04	ci right 2.389816e-04	k: 893	n:3990000
Cons ci ratio: 7.745093e-02	ci left: 6.167500e-04	ci right 6.666860e-04	k: 2559	n:3990000
KS ci ratio: 1.218461e-02	ci left: 2.513039e-02	ci right 2.543872e-02	k: 100884	n:3990000
SMAD4   3990000 perm   8002 sec   (499 perm/sec)   p_kst 2.528421e-02   p_cons 6.413534e-04   p_joint 2.238095e-04

Joint ci ratio: 1.314580e-01	ci left: 2.076383e-04	ci right 2.370932e-04	k: 888	n:4000000
Cons ci ratio: 7.737542e-02	ci left: 6.164340e-04	ci right 6.662935e-04	k: 2564	n:4000000
KS ci ratio: 1.216911e-02	ci left: 2.513162e-02	ci right 2.543957e-02	k: 101141	n:4000000
SMAD4   4000000 perm   8042 sec   (497 perm/sec)   p_kst 2.528525e-02   p_cons 6.410000e-04   p_joint 2.220000e-04

Joint ci ratio: 1.313841e-01	ci left: 2.073616e-04	ci right 2.367595e-04	k: 889	n:4010000
Cons ci ratio: 7.725503e-02	ci left: 6.168532e-04	ci right 6.666655e-04	k: 2572	n:4010000
KS ci ratio: 1.215361e-02	ci left: 2.513309e-02	ci right 2.544066e-02	k: 101399	n:4010000
SMAD4   4010000 perm   8079 sec   (496 perm/sec)   p_kst 2.528653e-02   p_cons 6.413965e-04   p_joint 2.216958e-04

Joint ci ratio: 1.313104e-01	ci left: 2.070864e-04	ci right 2.364275e-04	k: 890	n:4020000
Cons ci ratio: 7.713519e-02	ci left: 6.172704e-04	ci right 6.670356e-04	k: 2580	n:4020000
KS ci ratio: 1.213830e-02	ci left: 2.513406e-02	ci right 2.544125e-02	k: 101655	n:4020000
SMAD4   4020000 perm   8116 sec   (495 perm/sec)   p_kst 2.528731e-02   p_cons 6.417910e-04   p_joint 2.213930e-04

Joint ci ratio: 1.310899e-01	ci left: 2.072925e-04	ci right 2.366096e-04	k: 893	n:4030000
Cons ci ratio: 7.707551e-02	ci left: 6.167121e-04	ci right 6.663921e-04	k: 2584	n:4030000
KS ci ratio: 1.212292e-02	ci left: 2.513552e-02	ci right 2.544233e-02	k: 101913	n:4030000
SMAD4   4030000 perm   8158 sec   (494 perm/sec)   p_kst 2.528859e-02   p_cons 6.411911e-04   p_joint 2.215881e-04

Joint ci ratio: 1.308704e-01	ci left: 2.074977e-04	ci right 2.367908e-04	k: 896	n:4040000
Cons ci ratio: 7.701597e-02	ci left: 6.161566e-04	ci right 6.657518e-04	k: 2588	n:4040000
KS ci ratio: 1.210741e-02	ci left: 2.513771e-02	ci right 2.544416e-02	k: 102174	n:4040000
SMAD4   4040000 perm   8196 sec   (493 perm/sec)   p_kst 2.529059e-02   p_cons 6.405941e-04   p_joint 2.217822e-04

Joint ci ratio: 1.308705e-01	ci left: 2.069853e-04	ci right 2.362062e-04	k: 896	n:4050000
Cons ci ratio: 7.695657e-02	ci left: 6.156038e-04	ci right 6.651146e-04	k: 2592	n:4050000
KS ci ratio: 1.209142e-02	ci left: 2.514211e-02	ci right 2.544820e-02	k: 102444	n:4050000
SMAD4   4050000 perm   8233 sec   (492 perm/sec)   p_kst 2.529481e-02   p_cons 6.400000e-04   p_joint 2.212346e-04

Joint ci ratio: 1.307976e-01	ci left: 2.067138e-04	ci right 2.358788e-04	k: 897	n:4060000
Cons ci ratio: 7.688249e-02	ci left: 6.152954e-04	ci right 6.647316e-04	k: 2597	n:4060000
KS ci ratio: 1.207645e-02	ci left: 2.514255e-02	ci right 2.544827e-02	k: 102698	n:4060000
SMAD4   4060000 perm   8272 sec   (491 perm/sec)   p_kst 2.529507e-02   p_cons 6.396552e-04   p_joint 2.209360e-04

Joint ci ratio: 1.338125e-01	ci left: 1.967030e-04	ci right 2.251462e-04	k: 857	n:4070000
Cons ci ratio: 7.685296e-02	ci left: 6.142656e-04	ci right 6.635992e-04	k: 2599	n:4070000
KS ci ratio: 1.206215e-02	ci left: 2.514055e-02	ci right 2.544588e-02	k: 102942	n:4070000
SMAD4   4070000 perm   8312 sec   (490 perm/sec)   p_kst 2.529287e-02   p_cons 6.385749e-04   p_joint 2.105651e-04

Joint ci ratio: 1.336568e-01	ci left: 1.966947e-04	ci right 2.251010e-04	k: 859	n:4080000
Cons ci ratio: 7.683823e-02	ci left: 6.130004e-04	ci right 6.622226e-04	k: 2600	n:4080000
KS ci ratio: 1.204747e-02	ci left: 2.514026e-02	ci right 2.544521e-02	k: 103193	n:4080000
SMAD4   4080000 perm   8353 sec   (488 perm/sec)   p_kst 2.529240e-02   p_cons 6.372549e-04   p_joint 2.105392e-04

Joint ci ratio: 1.335792e-01	ci left: 1.964501e-04	ci right 2.248033e-04	k: 860	n:4090000
Cons ci ratio: 7.666154e-02	ci left: 6.143793e-04	ci right 6.635937e-04	k: 2612	n:4090000
KS ci ratio: 1.203333e-02	ci left: 2.513803e-02	ci right 2.544259e-02	k: 103436	n:4090000
SMAD4   4090000 perm   8395 sec   (487 perm/sec)   p_kst 2.528998e-02   p_cons 6.386308e-04   p_joint 2.102689e-04

Joint ci ratio: 1.334243e-01	ci left: 1.964425e-04	ci right 2.247591e-04	k: 862	n:4100000
Cons ci ratio: 7.654444e-02	ci left: 6.147947e-04	ci right 6.639638e-04	k: 2620	n:4100000
KS ci ratio: 1.201798e-02	ci left: 2.514091e-02	ci right 2.544512e-02	k: 103700	n:4100000
SMAD4   4100000 perm   8434 sec   (486 perm/sec)   p_kst 2.529268e-02   p_cons 6.390244e-04   p_joint 2.102439e-04

Joint ci ratio: 1.333471e-01	ci left: 1.961997e-04	ci right 2.244636e-04	k: 863	n:4110000
Cons ci ratio: 7.644242e-02	ci left: 6.149694e-04	ci right 6.640840e-04	k: 2627	n:4110000
KS ci ratio: 1.200608e-02	ci left: 2.512996e-02	ci right 2.543373e-02	k: 103907	n:4110000
SMAD4   4110000 perm   8473 sec   (485 perm/sec)   p_kst 2.528151e-02   p_cons 6.391727e-04   p_joint 2.099757e-04

Joint ci ratio: 1.331930e-01	ci left: 1.961927e-04	ci right 2.244204e-04	k: 865	n:4120000
Cons ci ratio: 7.641339e-02	ci left: 6.139529e-04	ci right 6.629669e-04	k: 2629	n:4120000
KS ci ratio: 1.199160e-02	ci left: 2.512970e-02	ci right 2.543310e-02	k: 104158	n:4120000
SMAD4   4120000 perm   8511 sec   (484 perm/sec)   p_kst 2.528107e-02   p_cons 6.381068e-04   p_joint 2.099515e-04

Joint ci ratio: 1.330395e-01	ci left: 1.961858e-04	ci right 2.243774e-04	k: 867	n:4130000
Cons ci ratio: 7.623961e-02	ci left: 6.153165e-04	ci right 6.643227e-04	k: 2641	n:4130000
KS ci ratio: 1.197736e-02	ci left: 2.512872e-02	ci right 2.543175e-02	k: 104406	n:4130000
SMAD4   4130000 perm   8556 sec   (483 perm/sec)   p_kst 2.527990e-02   p_cons 6.394673e-04   p_joint 2.099274e-04

Joint ci ratio: 1.328865e-01	ci left: 1.961790e-04	ci right 2.243346e-04	k: 869	n:4140000
Cons ci ratio: 7.613880e-02	ci left: 6.154888e-04	ci right 6.644410e-04	k: 2648	n:4140000
KS ci ratio: 1.196440e-02	ci left: 2.512269e-02	ci right 2.542531e-02	k: 104633	n:4140000
SMAD4   4140000 perm   8596 sec   (482 perm/sec)   p_kst 2.527367e-02   p_cons 6.396135e-04   p_joint 2.099034e-04

Joint ci ratio: 1.328102e-01	ci left: 1.959392e-04	ci right 2.240430e-04	k: 870	n:4150000
Cons ci ratio: 7.608141e-02	ci left: 6.149512e-04	ci right 6.638222e-04	k: 2652	n:4150000
KS ci ratio: 1.194879e-02	ci left: 2.512774e-02	ci right 2.543003e-02	k: 104906	n:4150000
SMAD4   4150000 perm   8639 sec   (480 perm/sec)   p_kst 2.527855e-02   p_cons 6.390361e-04   p_joint 2.096386e-04

Joint ci ratio: 1.324306e-01	ci left: 1.966303e-04	ci right 2.247462e-04	k: 875	n:4160000
Cons ci ratio: 7.602414e-02	ci left: 6.144162e-04	ci right 6.632063e-04	k: 2656	n:4160000
KS ci ratio: 1.193429e-02	ci left: 2.512845e-02	ci right 2.543038e-02	k: 105161	n:4160000
SMAD4   4160000 perm   8681 sec   (479 perm/sec)   p_kst 2.527909e-02   p_cons 6.384615e-04   p_joint 2.103365e-04

Joint ci ratio: 1.322796e-01	ci left: 1.966225e-04	ci right 2.247027e-04	k: 877	n:4170000
Cons ci ratio: 7.595272e-02	ci left: 6.141190e-04	ci right 6.628377e-04	k: 2661	n:4170000
KS ci ratio: 1.191874e-02	ci left: 2.513371e-02	ci right 2.543530e-02	k: 105435	n:4170000
SMAD4   4170000 perm   8722 sec   (478 perm/sec)   p_kst 2.528417e-02   p_cons 6.381295e-04   p_joint 2.103118e-04

Joint ci ratio: 1.320542e-01	ci left: 1.968460e-04	ci right 2.249066e-04	k: 880	n:4180000
Cons ci ratio: 7.582462e-02	ci left: 6.147621e-04	ci right 6.634459e-04	k: 2670	n:4180000
KS ci ratio: 1.190412e-02	ci left: 2.513536e-02	ci right 2.543659e-02	k: 105694	n:4180000
SMAD4   4180000 perm   8762 sec   (477 perm/sec)   p_kst 2.528565e-02   p_cons 6.387560e-04   p_joint 2.105263e-04

Joint ci ratio: 1.319046e-01	ci left: 1.968378e-04	ci right 2.248629e-04	k: 882	n:4190000
Cons ci ratio: 7.573961e-02	ci left: 6.146997e-04	ci right 6.633216e-04	k: 2676	n:4190000
KS ci ratio: 1.189030e-02	ci left: 2.513390e-02	ci right 2.543477e-02	k: 105940	n:4190000
SMAD4   4190000 perm   8803 sec   (476 perm/sec)   p_kst 2.528401e-02   p_cons 6.386635e-04   p_joint 2.105012e-04

Joint ci ratio: 1.317555e-01	ci left: 1.968296e-04	ci right 2.248194e-04	k: 884	n:4200000
Cons ci ratio: 7.568311e-02	ci left: 6.141705e-04	ci right 6.627127e-04	k: 2680	n:4200000
KS ci ratio: 1.187602e-02	ci left: 2.513459e-02	ci right 2.543511e-02	k: 106195	n:4200000
SMAD4   4200000 perm   8844 sec   (475 perm/sec)   p_kst 2.528452e-02   p_cons 6.380952e-04   p_joint 2.104762e-04

Joint ci ratio: 1.319047e-01	ci left: 1.959027e-04	ci right 2.237947e-04	k: 882	n:4210000
Cons ci ratio: 7.557043e-02	ci left: 6.145760e-04	ci right 6.630747e-04	k: 2688	n:4210000
KS ci ratio: 1.186224e-02	ci left: 2.513339e-02	ci right 2.543354e-02	k: 106442	n:4210000
SMAD4   4210000 perm   8889 sec   (474 perm/sec)   p_kst 2.528314e-02   p_cons 6.384798e-04   p_joint 2.095012e-04

Joint ci ratio: 1.316811e-01	ci left: 1.961260e-04	ci right 2.239987e-04	k: 885	n:4220000
Cons ci ratio: 7.548626e-02	ci left: 6.145146e-04	ci right 6.629521e-04	k: 2694	n:4220000
KS ci ratio: 1.184919e-02	ci left: 2.512935e-02	ci right 2.542912e-02	k: 106677	n:4220000
SMAD4   4220000 perm   8935 sec   (472 perm/sec)   p_kst 2.527891e-02   p_cons 6.383886e-04   p_joint 2.097156e-04

Joint ci ratio: 1.316812e-01	ci left: 1.956623e-04	ci right 2.234691e-04	k: 885	n:4230000
Cons ci ratio: 7.541635e-02	ci left: 6.142216e-04	ci right 6.625892e-04	k: 2699	n:4230000
KS ci ratio: 1.183528e-02	ci left: 2.512911e-02	ci right 2.542852e-02	k: 106928	n:4230000
SMAD4   4230000 perm   8977 sec   (471 perm/sec)   p_kst 2.527849e-02   p_cons 6.380615e-04   p_joint 2.092199e-04

Joint ci ratio: 1.316812e-01	ci left: 1.952008e-04	ci right 2.229421e-04	k: 885	n:4240000
Cons ci ratio: 7.537451e-02	ci left: 6.134671e-04	ci right 6.617473e-04	k: 2702	n:4240000
KS ci ratio: 1.182204e-02	ci left: 2.512628e-02	ci right 2.542532e-02	k: 107168	n:4240000
SMAD4   4240000 perm   9017 sec   (470 perm/sec)   p_kst 2.527547e-02   p_cons 6.372642e-04   p_joint 2.087264e-04

Joint ci ratio: 1.316812e-01	ci left: 1.947415e-04	ci right 2.224175e-04	k: 885	n:4250000
Cons ci ratio: 7.533275e-02	ci left: 6.127163e-04	ci right 6.609095e-04	k: 2705	n:4250000
KS ci ratio: 1.180867e-02	ci left: 2.512416e-02	ci right 2.542284e-02	k: 107411	n:4250000
SMAD4   4250000 perm   9059 sec   (469 perm/sec)   p_kst 2.527318e-02   p_cons 6.364706e-04   p_joint 2.082353e-04

Joint ci ratio: 1.313850e-01	ci left: 1.951925e-04	ci right 2.228652e-04	k: 889	n:4260000
Cons ci ratio: 7.530496e-02	ci left: 6.117386e-04	ci right 6.598364e-04	k: 2707	n:4260000
KS ci ratio: 1.179557e-02	ci left: 2.512112e-02	ci right 2.541943e-02	k: 107650	n:4260000
SMAD4   4260000 perm   9100 sec   (468 perm/sec)   p_kst 2.526995e-02   p_cons 6.354460e-04   p_joint 2.086854e-04

Joint ci ratio: 1.310174e-01	ci left: 1.958679e-04	ci right 2.235527e-04	k: 894	n:4270000
Cons ci ratio: 7.524943e-02	ci left: 6.112251e-04	ci right 6.592455e-04	k: 2711	n:4270000
KS ci ratio: 1.178090e-02	ci left: 2.512487e-02	ci right 2.542285e-02	k: 107918	n:4270000
SMAD4   4270000 perm   9142 sec   (467 perm/sec)   p_kst 2.527354e-02   p_cons 6.348946e-04   p_joint 2.093677e-04

Joint ci ratio: 1.315329e-01	ci left: 1.938284e-04	ci right 2.213412e-04	k: 887	n:4280000
Cons ci ratio: 7.516633e-02	ci left: 6.111725e-04	ci right 6.591334e-04	k: 2717	n:4280000
KS ci ratio: 1.176767e-02	ci left: 2.512278e-02	ci right 2.542039e-02	k: 108161	n:4280000
SMAD4   4280000 perm   9184 sec   (466 perm/sec)   p_kst 2.527126e-02   p_cons 6.348131e-04   p_joint 2.072430e-04

Joint ci ratio: 1.314589e-01	ci left: 1.936020e-04	ci right 2.210660e-04	k: 888	n:4290000
Cons ci ratio: 7.498716e-02	ci left: 6.127213e-04	ci right 6.606842e-04	k: 2730	n:4290000
KS ci ratio: 1.175427e-02	ci left: 2.512162e-02	ci right 2.541888e-02	k: 108408	n:4290000
SMAD4   4290000 perm   9224 sec   (465 perm/sec)   p_kst 2.526993e-02   p_cons 6.363636e-04   p_joint 2.069930e-04

Joint ci ratio: 1.313113e-01	ci left: 1.936016e-04	ci right 2.210323e-04	k: 890	n:4300000
Cons ci ratio: 7.482290e-02	ci left: 6.140348e-04	ci right 6.619906e-04	k: 2742	n:4300000
KS ci ratio: 1.174135e-02	ci left: 2.511862e-02	ci right 2.541551e-02	k: 108647	n:4300000
SMAD4   4300000 perm   9265 sec   (464 perm/sec)   p_kst 2.526674e-02   p_cons 6.376744e-04   p_joint 2.069767e-04

Joint ci ratio: 1.311642e-01	ci left: 1.936012e-04	ci right 2.209987e-04	k: 892	n:4310000
Cons ci ratio: 7.472761e-02	ci left: 6.142039e-04	ci right 6.621092e-04	k: 2749	n:4310000
KS ci ratio: 1.172737e-02	ci left: 2.512025e-02	ci right 2.541681e-02	k: 108906	n:4310000
SMAD4   4310000 perm   9308 sec   (463 perm/sec)   p_kst 2.526821e-02   p_cons 6.378190e-04   p_joint 2.069606e-04

Joint ci ratio: 1.310176e-01	ci left: 1.936009e-04	ci right 2.209653e-04	k: 894	n:4320000
Cons ci ratio: 7.465978e-02	ci left: 6.139179e-04	ci right 6.617555e-04	k: 2754	n:4320000
KS ci ratio: 1.171410e-02	ci left: 2.511911e-02	ci right 2.541532e-02	k: 109153	n:4320000
SMAD4   4320000 perm   9349 sec   (462 perm/sec)   p_kst 2.526690e-02   p_cons 6.375000e-04   p_joint 2.069444e-04

Joint ci ratio: 1.307985e-01	ci left: 1.938239e-04	ci right 2.211705e-04	k: 897	n:4330000
Cons ci ratio: 7.463273e-02	ci left: 6.129533e-04	ci right 6.606978e-04	k: 2756	n:4330000
KS ci ratio: 1.170049e-02	ci left: 2.511959e-02	ci right 2.541546e-02	k: 109407	n:4330000
SMAD4   4330000 perm   9390 sec   (461 perm/sec)   p_kst 2.526721e-02   p_cons 6.364896e-04   p_joint 2.071594e-04

Joint ci ratio: 1.306531e-01	ci left: 1.938231e-04	ci right 2.211368e-04	k: 899	n:4340000
Cons ci ratio: 7.456516e-02	ci left: 6.126716e-04	ci right 6.603490e-04	k: 2761	n:4340000
KS ci ratio: 1.168683e-02	ci left: 2.512052e-02	ci right 2.541605e-02	k: 109663	n:4340000
SMAD4   4340000 perm   9437 sec   (460 perm/sec)   p_kst 2.526797e-02   p_cons 6.361751e-04   p_joint 2.071429e-04

Joint ci ratio: 1.305806e-01	ci left: 1.935999e-04	ci right 2.208658e-04	k: 900	n:4350000
Cons ci ratio: 7.449777e-02	ci left: 6.123911e-04	ci right 6.600018e-04	k: 2766	n:4350000
KS ci ratio: 1.167293e-02	ci left: 2.512260e-02	ci right 2.541780e-02	k: 109924	n:4350000
SMAD4   4350000 perm   9481 sec   (459 perm/sec)   p_kst 2.526989e-02   p_cons 6.358621e-04   p_joint 2.068966e-04

Joint ci ratio: 1.305082e-01	ci left: 1.933777e-04	ci right 2.205961e-04	k: 901	n:4360000
Cons ci ratio: 7.441713e-02	ci left: 6.123371e-04	ci right 6.598898e-04	k: 2772	n:4360000
KS ci ratio: 1.165854e-02	ci left: 2.512696e-02	ci right 2.542184e-02	k: 110195	n:4360000
SMAD4   4360000 perm   9525 sec   (458 perm/sec)   p_kst 2.527408e-02   p_cons 6.357798e-04   p_joint 2.066514e-04

Joint ci ratio: 1.305082e-01	ci left: 1.929352e-04	ci right 2.200913e-04	k: 901	n:4370000
Cons ci ratio: 7.433676e-02	ci left: 6.122833e-04	ci right 6.597783e-04	k: 2778	n:4370000
KS ci ratio: 1.164426e-02	ci left: 2.513106e-02	ci right 2.542563e-02	k: 110465	n:4370000
SMAD4   4370000 perm   9569 sec   (457 perm/sec)   p_kst 2.527803e-02   p_cons 6.356979e-04   p_joint 2.061785e-04

Joint ci ratio: 1.302917e-01	ci left: 1.931573e-04	ci right 2.202960e-04	k: 904	n:4380000
Cons ci ratio: 7.425664e-02	ci left: 6.122298e-04	ci right 6.596672e-04	k: 2784	n:4380000
KS ci ratio: 1.162993e-02	ci left: 2.513561e-02	ci right 2.542986e-02	k: 110737	n:4380000
SMAD4   4380000 perm   9610 sec   (456 perm/sec)   p_kst 2.528242e-02   p_cons 6.356164e-04   p_joint 2.063927e-04

Joint ci ratio: 1.302198e-01	ci left: 1.929376e-04	ci right 2.200294e-04	k: 905	n:4390000
Cons ci ratio: 7.419008e-02	ci left: 6.119530e-04	ci right 6.593247e-04	k: 2789	n:4390000
KS ci ratio: 1.161570e-02	ci left: 2.513990e-02	ci right 2.543385e-02	k: 111008	n:4390000
SMAD4   4390000 perm   9653 sec   (455 perm/sec)   p_kst 2.528656e-02   p_cons 6.353075e-04   p_joint 2.061503e-04

Joint ci ratio: 1.391030e-01	ci left: 1.679010e-04	ci right 1.932189e-04	k: 793	n:4400000
Cons ci ratio: 7.413698e-02	ci left: 6.114545e-04	ci right 6.587522e-04	k: 2793	n:4400000
KS ci ratio: 1.160345e-02	ci left: 2.513602e-02	ci right 2.542961e-02	k: 111243	n:4400000
SMAD4   4400000 perm   9695 sec   (454 perm/sec)   p_kst 2.528250e-02   p_cons 6.347727e-04   p_joint 1.802273e-04

Joint ci ratio: 1.390155e-01	ci left: 1.677392e-04	ci right 1.930154e-04	k: 794	n:4410000
Cons ci ratio: 7.405751e-02	ci left: 6.114033e-04	ci right 6.586441e-04	k: 2799	n:4410000
KS ci ratio: 1.158910e-02	ci left: 2.514120e-02	ci right 2.543448e-02	k: 111518	n:4410000
SMAD4   4410000 perm   9740 sec   (453 perm/sec)   p_kst 2.528753e-02   p_cons 6.346939e-04   p_joint 1.800454e-04

Joint ci ratio: 1.399876e-01	ci left: 1.649578e-04	ci right 1.900033e-04	k: 783	n:4420000
Cons ci ratio: 7.401789e-02	ci left: 6.106862e-04	ci right 6.578453e-04	k: 2802	n:4420000
KS ci ratio: 1.157550e-02	ci left: 2.514342e-02	ci right 2.543639e-02	k: 111780	n:4420000
SMAD4   4420000 perm   9781 sec   (452 perm/sec)   p_kst 2.528959e-02   p_cons 6.339367e-04   p_joint 1.771493e-04

Joint ci ratio: 1.399876e-01	ci left: 1.645855e-04	ci right 1.895744e-04	k: 783	n:4430000
Cons ci ratio: 7.397834e-02	ci left: 6.099723e-04	ci right 6.570501e-04	k: 2805	n:4430000
KS ci ratio: 1.156343e-02	ci left: 2.513933e-02	ci right 2.543194e-02	k: 112014	n:4430000
SMAD4   4430000 perm   9825 sec   (451 perm/sec)   p_kst 2.528533e-02   p_cons 6.331828e-04   p_joint 1.767494e-04

Joint ci ratio: 1.398984e-01	ci left: 1.644321e-04	ci right 1.893805e-04	k: 784	n:4440000
Cons ci ratio: 7.392569e-02	ci left: 6.094827e-04	ci right 6.564878e-04	k: 2809	n:4440000
KS ci ratio: 1.155145e-02	ci left: 2.513504e-02	ci right 2.542729e-02	k: 112247	n:4440000
SMAD4   4440000 perm   9870 sec   (450 perm/sec)   p_kst 2.528086e-02   p_cons 6.326577e-04   p_joint 1.765766e-04

Joint ci ratio: 1.398094e-01	ci left: 1.642795e-04	ci right 1.891875e-04	k: 785	n:4450000
Cons ci ratio: 7.386002e-02	ci left: 6.092159e-04	ci right 6.561569e-04	k: 2814	n:4450000
KS ci ratio: 1.154003e-02	ci left: 2.512852e-02	ci right 2.542041e-02	k: 112470	n:4450000
SMAD4   4450000 perm   9911 sec   (449 perm/sec)   p_kst 2.527416e-02   p_cons 6.323596e-04   p_joint 1.764045e-04

Joint ci ratio: 1.398094e-01	ci left: 1.639111e-04	ci right 1.887633e-04	k: 785	n:4460000
Cons ci ratio: 7.379452e-02	ci left: 6.089504e-04	ci right 6.558274e-04	k: 2819	n:4460000
KS ci ratio: 1.152691e-02	ci left: 2.512942e-02	ci right 2.542098e-02	k: 112726	n:4460000
SMAD4   4460000 perm   9952 sec   (448 perm/sec)   p_kst 2.527489e-02   p_cons 6.320628e-04   p_joint 1.760090e-04

Joint ci ratio: 1.396319e-01	ci left: 1.639762e-04	ci right 1.888041e-04	k: 787	n:4470000
Cons ci ratio: 7.371614e-02	ci left: 6.089056e-04	ci right 6.557273e-04	k: 2825	n:4470000
KS ci ratio: 1.151489e-02	ci left: 2.512584e-02	ci right 2.541706e-02	k: 112962	n:4470000
SMAD4   4470000 perm   10000 sec   (447 perm/sec)   p_kst 2.527114e-02   p_cons 6.319911e-04   p_joint 1.760626e-04

Joint ci ratio: 1.392788e-01	ci left: 1.644719e-04	ci right 1.893067e-04	k: 791	n:4480000
Cons ci ratio: 7.357306e-02	ci left: 6.099566e-04	ci right 6.567642e-04	k: 2836	n:4480000
KS ci ratio: 1.150181e-02	ci left: 2.512696e-02	ci right 2.541785e-02	k: 113219	n:4480000
SMAD4   4480000 perm   10049 sec   (446 perm/sec)   p_kst 2.527210e-02   p_cons 6.330357e-04   p_joint 1.765625e-04

Joint ci ratio: 1.389284e-01	ci left: 1.649655e-04	ci right 1.898069e-04	k: 795	n:4490000
Cons ci ratio: 7.346953e-02	ci left: 6.103471e-04	ci right 6.571159e-04	k: 2844	n:4490000
KS ci ratio: 1.148919e-02	ci left: 2.512629e-02	ci right 2.541686e-02	k: 113468	n:4490000
SMAD4   4490000 perm   10097 sec   (445 perm/sec)   p_kst 2.527127e-02   p_cons 6.334076e-04   p_joint 1.770601e-04

Joint ci ratio: 1.386673e-01	ci left: 1.652424e-04	ci right 1.900749e-04	k: 798	n:4500000
Cons ci ratio: 7.334072e-02	ci left: 6.111722e-04	ci right 6.579187e-04	k: 2854	n:4500000
KS ci ratio: 1.147717e-02	ci left: 2.512319e-02	ci right 2.541342e-02	k: 113706	n:4500000
SMAD4   4500000 perm   10144 sec   (444 perm/sec)   p_kst 2.526800e-02   p_cons 6.342222e-04   p_joint 1.773333e-04

Joint ci ratio: 1.384077e-01	ci left: 1.655181e-04	ci right 1.903417e-04	k: 801	n:4510000
Cons ci ratio: 7.326378e-02	ci left: 6.111230e-04	ci right 6.578146e-04	k: 2860	n:4510000
KS ci ratio: 1.146391e-02	ci left: 2.512564e-02	ci right 2.541555e-02	k: 113969	n:4510000
SMAD4   4510000 perm   10191 sec   (443 perm/sec)   p_kst 2.527029e-02   p_cons 6.341463e-04   p_joint 1.776053e-04

Joint ci ratio: 1.390158e-01	ci left: 1.636570e-04	ci right 1.883182e-04	k: 794	n:4520000
Cons ci ratio: 7.316155e-02	ci left: 6.115085e-04	ci right 6.581616e-04	k: 2868	n:4520000
KS ci ratio: 1.145110e-02	ci left: 2.512630e-02	ci right 2.541590e-02	k: 114224	n:4520000
SMAD4   4520000 perm   10235 sec   (442 perm/sec)   p_kst 2.527080e-02   p_cons 6.345133e-04   p_joint 1.756637e-04

Joint ci ratio: 1.388413e-01	ci left: 1.637219e-04	ci right 1.883593e-04	k: 796	n:4530000
Cons ci ratio: 7.313609e-02	ci left: 6.105920e-04	ci right 6.571583e-04	k: 2870	n:4530000
KS ci ratio: 1.143721e-02	ci left: 2.513181e-02	ci right 2.542112e-02	k: 114501	n:4530000
SMAD4   4530000 perm   10278 sec   (441 perm/sec)   p_kst 2.527616e-02   p_cons 6.335541e-04   p_joint 1.757174e-04

Joint ci ratio: 1.386674e-01	ci left: 1.637865e-04	ci right 1.884002e-04	k: 798	n:4540000
Cons ci ratio: 7.304709e-02	ci left: 6.107608e-04	ci right 6.572808e-04	k: 2877	n:4540000
KS ci ratio: 1.142429e-02	ci left: 2.513334e-02	ci right 2.542233e-02	k: 114760	n:4540000
SMAD4   4540000 perm   10323 sec   (440 perm/sec)   p_kst 2.527753e-02   p_cons 6.337004e-04   p_joint 1.757709e-04

Joint ci ratio: 1.383216e-01	ci left: 1.642752e-04	ci right 1.888957e-04	k: 802	n:4550000
Cons ci ratio: 7.292049e-02	ci left: 6.115762e-04	ci right 6.580741e-04	k: 2887	n:4550000
KS ci ratio: 1.140968e-02	ci left: 2.514231e-02	ci right 2.543104e-02	k: 115053	n:4550000
SMAD4   4550000 perm   10365 sec   (439 perm/sec)   p_kst 2.528637e-02   p_cons 6.345055e-04   p_joint 1.762637e-04

Joint ci ratio: 1.383216e-01	ci left: 1.639149e-04	ci right 1.884815e-04	k: 802	n:4560000
Cons ci ratio: 7.287006e-02	ci left: 6.110962e-04	ci right 6.575242e-04	k: 2891	n:4560000
KS ci ratio: 1.139797e-02	ci left: 2.513900e-02	ci right 2.542739e-02	k: 115290	n:4560000
SMAD4   4560000 perm   10410 sec   (438 perm/sec)   p_kst 2.528289e-02   p_cons 6.339912e-04   p_joint 1.758772e-04

Joint ci ratio: 1.381497e-01	ci left: 1.639788e-04	ci right 1.885218e-04	k: 804	n:4570000
Cons ci ratio: 7.276946e-02	ci left: 6.114777e-04	ci right 6.578678e-04	k: 2899	n:4570000
KS ci ratio: 1.138523e-02	ci left: 2.514029e-02	ci right 2.542837e-02	k: 115548	n:4570000
SMAD4   4570000 perm   10453 sec   (437 perm/sec)   p_kst 2.528403e-02   p_cons 6.343545e-04   p_joint 1.759300e-04

Joint ci ratio: 1.380639e-01	ci left: 1.638315e-04	ci right 1.883361e-04	k: 805	n:4580000
Cons ci ratio: 7.265679e-02	ci left: 6.120719e-04	ci right 6.584322e-04	k: 2908	n:4580000
KS ci ratio: 1.137405e-02	ci left: 2.513504e-02	ci right 2.542277e-02	k: 115776	n:4580000
SMAD4   4580000 perm   10498 sec   (436 perm/sec)   p_kst 2.527860e-02   p_cons 6.349345e-04   p_joint 1.757642e-04

Joint ci ratio: 1.377226e-01	ci left: 1.643160e-04	ci right 1.888273e-04	k: 809	n:4590000
Cons ci ratio: 7.254463e-02	ci left: 6.126636e-04	ci right 6.589941e-04	k: 2917	n:4590000
KS ci ratio: 1.136149e-02	ci left: 2.513589e-02	ci right 2.542331e-02	k: 116032	n:4590000
SMAD4   4590000 perm   10544 sec   (435 perm/sec)   p_kst 2.527930e-02   p_cons 6.355120e-04   p_joint 1.762527e-04

Joint ci ratio: 1.376377e-01	ci left: 1.641687e-04	ci right 1.886416e-04	k: 810	n:4600000
Cons ci ratio: 7.251982e-02	ci left: 6.117586e-04	ci right 6.580041e-04	k: 2919	n:4600000
KS ci ratio: 1.134952e-02	ci left: 2.513436e-02	ci right 2.542146e-02	k: 116277	n:4600000
SMAD4   4600000 perm   10592 sec   (434 perm/sec)   p_kst 2.527761e-02   p_cons 6.345652e-04   p_joint 1.760870e-04

Joint ci ratio: 1.372153e-01	ci left: 1.648599e-04	ci right 1.893543e-04	k: 815	n:4610000
Cons ci ratio: 7.245782e-02	ci left: 6.114965e-04	ci right 6.576811e-04	k: 2924	n:4610000
KS ci ratio: 1.133775e-02	ci left: 2.513218e-02	ci right 2.541896e-02	k: 116519	n:4610000
SMAD4   4610000 perm   10637 sec   (433 perm/sec)   p_kst 2.527527e-02   p_cons 6.342733e-04   p_joint 1.767896e-04

Joint ci ratio: 1.369637e-01	ci left: 1.651301e-04	ci right 1.896161e-04	k: 818	n:4620000
Cons ci ratio: 7.229729e-02	ci left: 6.129359e-04	ci right 6.591223e-04	k: 2937	n:4620000
KS ci ratio: 1.132551e-02	ci left: 2.513217e-02	ci right 2.541864e-02	k: 116771	n:4620000
SMAD4   4620000 perm   10682 sec   (433 perm/sec)   p_kst 2.527511e-02   p_cons 6.357143e-04   p_joint 1.770563e-04

Joint ci ratio: 1.369638e-01	ci left: 1.647735e-04	ci right 1.892065e-04	k: 818	n:4630000
Cons ci ratio: 7.219904e-02	ci left: 6.133087e-04	ci right 6.594577e-04	k: 2945	n:4630000
KS ci ratio: 1.131232e-02	ci left: 2.513647e-02	ci right 2.542265e-02	k: 117043	n:4630000
SMAD4   4630000 perm   10725 sec   (432 perm/sec)   p_kst 2.527927e-02   p_cons 6.360691e-04   p_joint 1.766739e-04

Joint ci ratio: 1.367968e-01	ci left: 1.648346e-04	ci right 1.892445e-04	k: 820	n:4640000
Cons ci ratio: 7.210120e-02	ci left: 6.136800e-04	ci right 6.597917e-04	k: 2953	n:4640000
KS ci ratio: 1.130011e-02	ci left: 2.513667e-02	ci right 2.542254e-02	k: 117296	n:4640000
SMAD4   4640000 perm   10771 sec   (431 perm/sec)   p_kst 2.527931e-02   p_cons 6.364224e-04   p_joint 1.767241e-04

Joint ci ratio: 1.366305e-01	ci left: 1.648956e-04	ci right 1.892824e-04	k: 822	n:4650000
Cons ci ratio: 7.202809e-02	ci left: 6.136273e-04	ci right 6.596864e-04	k: 2959	n:4650000
KS ci ratio: 1.128819e-02	ci left: 2.513580e-02	ci right 2.542135e-02	k: 117544	n:4650000
SMAD4   4650000 perm   10814 sec   (430 perm/sec)   p_kst 2.527828e-02   p_cons 6.363441e-04   p_joint 1.767742e-04

Joint ci ratio: 1.365476e-01	ci left: 1.647490e-04	ci right 1.890981e-04	k: 823	n:4660000
Cons ci ratio: 7.195520e-02	ci left: 6.135749e-04	ci right 6.595815e-04	k: 2965	n:4660000
KS ci ratio: 1.127542e-02	ci left: 2.513878e-02	ci right 2.542404e-02	k: 117810	n:4660000
SMAD4   4660000 perm   10861 sec   (429 perm/sec)   p_kst 2.528112e-02   p_cons 6.362661e-04   p_joint 1.766094e-04

Joint ci ratio: 1.364648e-01	ci left: 1.646030e-04	ci right 1.889146e-04	k: 824	n:4670000
Cons ci ratio: 7.193099e-02	ci left: 6.126815e-04	ci right 6.586051e-04	k: 2967	n:4670000
KS ci ratio: 1.126402e-02	ci left: 2.513598e-02	ci right 2.542093e-02	k: 118049	n:4670000
SMAD4   4670000 perm   10906 sec   (428 perm/sec)   p_kst 2.527816e-02   p_cons 6.353319e-04   p_joint 1.764454e-04

Joint ci ratio: 1.362174e-01	ci left: 1.648704e-04	ci right 1.891738e-04	k: 827	n:4680000
Cons ci ratio: 7.183423e-02	ci left: 6.130511e-04	ci right 6.589379e-04	k: 2975	n:4680000
KS ci ratio: 1.125299e-02	ci left: 2.513170e-02	ci right 2.541632e-02	k: 118281	n:4680000
SMAD4   4680000 perm   10950 sec   (427 perm/sec)   p_kst 2.527372e-02   p_cons 6.356838e-04   p_joint 1.767094e-04

Joint ci ratio: 1.358895e-01	ci left: 1.653428e-04	ci right 1.896524e-04	k: 831	n:4690000
Cons ci ratio: 7.176193e-02	ci left: 6.130003e-04	ci right 6.588352e-04	k: 2981	n:4690000
KS ci ratio: 1.123956e-02	ci left: 2.513808e-02	ci right 2.542242e-02	k: 118563	n:4690000
SMAD4   4690000 perm   10994 sec   (427 perm/sec)   p_kst 2.527996e-02   p_cons 6.356077e-04   p_joint 1.771855e-04

Joint ci ratio: 1.358895e-01	ci left: 1.649910e-04	ci right 1.892488e-04	k: 831	n:4700000
Cons ci ratio: 7.171386e-02	ci left: 6.125318e-04	ci right 6.582998e-04	k: 2985	n:4700000
KS ci ratio: 1.122677e-02	ci left: 2.514188e-02	ci right 2.542594e-02	k: 118833	n:4700000
SMAD4   4700000 perm   11039 sec   (426 perm/sec)   p_kst 2.528362e-02   p_cons 6.351064e-04   p_joint 1.768085e-04

Joint ci ratio: 1.354830e-01	ci left: 1.656662e-04	ci right 1.899446e-04	k: 836	n:4710000
Cons ci ratio: 7.158210e-02	ci left: 6.135250e-04	ci right 6.592794e-04	k: 2996	n:4710000
KS ci ratio: 1.121479e-02	ci left: 2.514228e-02	ci right 2.542604e-02	k: 119087	n:4710000
SMAD4   4710000 perm   11085 sec   (425 perm/sec)   p_kst 2.528386e-02   p_cons 6.360934e-04   p_joint 1.774947e-04

Joint ci ratio: 1.353214e-01	ci left: 1.657246e-04	ci right 1.899803e-04	k: 838	n:4720000
Cons ci ratio: 7.148674e-02	ci left: 6.138897e-04	ci right 6.596078e-04	k: 3004	n:4720000
KS ci ratio: 1.120443e-02	ci left: 2.513570e-02	ci right 2.541912e-02	k: 119308	n:4720000
SMAD4   4720000 perm   11135 sec   (424 perm/sec)   p_kst 2.527712e-02   p_cons 6.364407e-04   p_joint 1.775424e-04

Joint ci ratio: 1.352408e-01	ci left: 1.655785e-04	ci right 1.897972e-04	k: 839	n:4730000
Cons ci ratio: 7.141548e-02	ci left: 6.138377e-04	ci right 6.595045e-04	k: 3010	n:4730000
KS ci ratio: 1.119315e-02	ci left: 2.513337e-02	ci right 2.541648e-02	k: 119549	n:4730000
SMAD4   4730000 perm   11182 sec   (423 perm/sec)   p_kst 2.527463e-02   p_cons 6.363636e-04   p_joint 1.773784e-04

Joint ci ratio: 1.357265e-01	ci left: 1.640062e-04	ci right 1.880881e-04	k: 833	n:4740000
Cons ci ratio: 7.136811e-02	ci left: 6.133715e-04	ci right 6.589721e-04	k: 3014	n:4740000
KS ci ratio: 1.118056e-02	ci left: 2.513693e-02	ci right 2.541976e-02	k: 119818	n:4740000
SMAD4   4740000 perm   11226 sec   (422 perm/sec)   p_kst 2.527806e-02   p_cons 6.358650e-04   p_joint 1.757384e-04

Joint ci ratio: 1.355641e-01	ci left: 1.640677e-04	ci right 1.881274e-04	k: 835	n:4750000
Cons ci ratio: 7.125002e-02	ci left: 6.141479e-04	ci right 6.597275e-04	k: 3024	n:4750000
KS ci ratio: 1.117006e-02	ci left: 2.513146e-02	ci right 2.541396e-02	k: 120044	n:4750000
SMAD4   4750000 perm   11272 sec   (421 perm/sec)   p_kst 2.527242e-02   p_cons 6.366316e-04   p_joint 1.757895e-04

Joint ci ratio: 1.355641e-01	ci left: 1.637230e-04	ci right 1.877322e-04	k: 835	n:4760000
Cons ci ratio: 7.120298e-02	ci left: 6.136830e-04	ci right 6.591969e-04	k: 3028	n:4760000
KS ci ratio: 1.115774e-02	ci left: 2.513418e-02	ci right 2.541640e-02	k: 120309	n:4760000
SMAD4   4760000 perm   11318 sec   (421 perm/sec)   p_kst 2.527500e-02   p_cons 6.361345e-04   p_joint 1.754202e-04

Joint ci ratio: 1.353215e-01	ci left: 1.639874e-04	ci right 1.879889e-04	k: 838	n:4770000
Cons ci ratio: 7.114429e-02	ci left: 6.134261e-04	ci right 6.588818e-04	k: 3033	n:4770000
KS ci ratio: 1.114579e-02	ci left: 2.513542e-02	ci right 2.541735e-02	k: 120567	n:4770000
SMAD4   4770000 perm   11362 sec   (420 perm/sec)   p_kst 2.527610e-02   p_cons 6.358491e-04   p_joint 1.756813e-04

Joint ci ratio: 1.386680e-01	ci left: 1.555629e-04	ci right 1.789409e-04	k: 798	n:4780000
Cons ci ratio: 8.171797e-02	ci left: 4.615054e-04	ci right 5.010285e-04	k: 2299	n:4780000
KS ci ratio: 1.113345e-02	ci left: 2.513854e-02	ci right 2.542019e-02	k: 120834	n:4780000
SMAD4   4780000 perm   11406 sec   (419 perm/sec)   p_kst 2.527908e-02   p_cons 4.809623e-04   p_joint 1.669456e-04

Joint ci ratio: 1.384084e-01	ci left: 1.558427e-04	ci right 1.792153e-04	k: 801	n:4790000
Cons ci ratio: 8.168249e-02	ci left: 4.609509e-04	ci right 5.004085e-04	k: 2301	n:4790000
KS ci ratio: 1.112205e-02	ci left: 2.513769e-02	ci right 2.541904e-02	k: 121082	n:4790000
SMAD4   4790000 perm   11452 sec   (418 perm/sec)   p_kst 2.527808e-02   p_cons 4.803758e-04   p_joint 1.672234e-04

Joint ci ratio: 1.381502e-01	ci left: 1.561214e-04	ci right 1.794885e-04	k: 804	n:4800000
Cons ci ratio: 8.164706e-02	ci left: 4.603988e-04	ci right 4.997912e-04	k: 2303	n:4800000
KS ci ratio: 1.111026e-02	ci left: 2.513871e-02	ci right 2.541978e-02	k: 121339	n:4800000
SMAD4   4800000 perm   11500 sec   (417 perm/sec)   p_kst 2.527896e-02   p_cons 4.797917e-04   p_joint 1.675000e-04

Joint ci ratio: 1.378935e-01	ci left: 1.563990e-04	ci right 1.797606e-04	k: 807	n:4810000
Cons ci ratio: 8.157628e-02	ci left: 4.602562e-04	ci right 4.996007e-04	k: 2307	n:4810000
KS ci ratio: 1.109837e-02	ci left: 2.514036e-02	ci right 2.542113e-02	k: 121599	n:4810000
SMAD4   4810000 perm   11546 sec   (417 perm/sec)   p_kst 2.528046e-02   p_cons 4.796258e-04   p_joint 1.677755e-04

Joint ci ratio: 1.376382e-01	ci left: 1.566755e-04	ci right 1.800315e-04	k: 810	n:4820000
Cons ci ratio: 8.148806e-02	ci left: 4.603175e-04	ci right 4.996227e-04	k: 2312	n:4820000
KS ci ratio: 1.108749e-02	ci left: 2.513764e-02	ci right 2.541811e-02	k: 121838	n:4820000
SMAD4   4820000 perm   11590 sec   (416 perm/sec)   p_kst 2.527759e-02   p_cons 4.796680e-04   p_joint 1.680498e-04

Joint ci ratio: 1.373843e-01	ci left: 1.569508e-04	ci right 1.803012e-04	k: 813	n:4830000
Cons ci ratio: 8.132995e-02	ci left: 4.611899e-04	ci right 5.004895e-04	k: 2321	n:4830000
KS ci ratio: 1.107562e-02	ci left: 2.513949e-02	ci right 2.541967e-02	k: 122099	n:4830000
SMAD4   4830000 perm   11636 sec   (415 perm/sec)   p_kst 2.527930e-02   p_cons 4.805383e-04   p_joint 1.683230e-04

Joint ci ratio: 1.373000e-01	ci left: 1.568261e-04	ci right 1.801424e-04	k: 814	n:4840000
Cons ci ratio: 8.125999e-02	ci left: 4.610467e-04	ci right 5.002987e-04	k: 2325	n:4840000
KS ci ratio: 1.106421e-02	ci left: 2.513947e-02	ci right 2.541936e-02	k: 122351	n:4840000
SMAD4   4840000 perm   11684 sec   (414 perm/sec)   p_kst 2.527913e-02   p_cons 4.803719e-04   p_joint 1.681818e-04

Joint ci ratio: 1.371319e-01	ci left: 1.569009e-04	ci right 1.801975e-04	k: 816	n:4850000
Cons ci ratio: 8.117279e-02	ci left: 4.611061e-04	ci right 5.003190e-04	k: 2330	n:4850000
KS ci ratio: 1.105293e-02	ci left: 2.513904e-02	ci right 2.541864e-02	k: 122601	n:4850000
SMAD4   4850000 perm   11731 sec   (413 perm/sec)   p_kst 2.527856e-02   p_cons 4.804124e-04   p_joint 1.682474e-04

Joint ci ratio: 1.370480e-01	ci left: 1.567768e-04	ci right 1.800395e-04	k: 817	n:4860000
Cons ci ratio: 8.108587e-02	ci left: 4.611652e-04	ci right 5.003392e-04	k: 2335	n:4860000
KS ci ratio: 1.104108e-02	ci left: 2.514128e-02	ci right 2.542061e-02	k: 122864	n:4860000
SMAD4   4860000 perm   11778 sec   (413 perm/sec)   p_kst 2.528066e-02   p_cons 4.804527e-04   p_joint 1.681070e-04

Joint ci ratio: 1.369644e-01	ci left: 1.566532e-04	ci right 1.798822e-04	k: 818	n:4870000
Cons ci ratio: 8.105121e-02	ci left: 4.606206e-04	ci right 4.997309e-04	k: 2337	n:4870000
KS ci ratio: 1.102973e-02	ci left: 2.514146e-02	ci right 2.542050e-02	k: 123117	n:4870000
SMAD4   4870000 perm   11823 sec   (412 perm/sec)   p_kst 2.528070e-02   p_cons 4.798768e-04   p_joint 1.679671e-04

Joint ci ratio: 1.368808e-01	ci left: 1.565301e-04	ci right 1.797255e-04	k: 819	n:4880000
Cons ci ratio: 8.098197e-02	ci left: 4.604798e-04	ci right 4.995431e-04	k: 2341	n:4880000
KS ci ratio: 1.101810e-02	ci left: 2.514307e-02	ci right 2.542184e-02	k: 123377	n:4880000
SMAD4   4880000 perm   11873 sec   (411 perm/sec)   p_kst 2.528217e-02   p_cons 4.797131e-04   p_joint 1.678279e-04

Joint ci ratio: 1.367142e-01	ci left: 1.566050e-04	ci right 1.797810e-04	k: 821	n:4890000
Cons ci ratio: 8.096472e-02	ci left: 4.597385e-04	ci right 4.987302e-04	k: 2342	n:4890000
KS ci ratio: 1.100759e-02	ci left: 2.513978e-02	ci right 2.541824e-02	k: 123613	n:4890000
SMAD4   4890000 perm   11918 sec   (410 perm/sec)   p_kst 2.527873e-02   p_cons 4.789366e-04   p_joint 1.678937e-04

Joint ci ratio: 1.367142e-01	ci left: 1.562854e-04	ci right 1.794141e-04	k: 821	n:4900000
Cons ci ratio: 8.093021e-02	ci left: 4.592001e-04	ci right 4.981288e-04	k: 2344	n:4900000
KS ci ratio: 1.099584e-02	ci left: 2.514221e-02	ci right 2.542039e-02	k: 123877	n:4900000
SMAD4   4900000 perm   11965 sec   (410 perm/sec)   p_kst 2.528102e-02   p_cons 4.783673e-04   p_joint 1.675510e-04

Joint ci ratio: 1.365482e-01	ci left: 1.563605e-04	ci right 1.794699e-04	k: 823	n:4910000
Cons ci ratio: 8.086128e-02	ci left: 4.590631e-04	ci right 4.979454e-04	k: 2348	n:4910000
KS ci ratio: 1.098422e-02	ci left: 2.514422e-02	ci right 2.542213e-02	k: 124139	n:4910000
SMAD4   4910000 perm   12012 sec   (409 perm/sec)   p_kst 2.528289e-02   p_cons 4.782077e-04   p_joint 1.676171e-04

Joint ci ratio: 1.364654e-01	ci left: 1.562390e-04	ci right 1.793154e-04	k: 824	n:4920000
Cons ci ratio: 8.072391e-02	ci left: 4.597232e-04	ci right 4.985922e-04	k: 2356	n:4920000
KS ci ratio: 1.097137e-02	ci left: 2.515189e-02	ci right 2.542956e-02	k: 124429	n:4920000
SMAD4   4920000 perm   12058 sec   (408 perm/sec)   p_kst 2.529045e-02   p_cons 4.788618e-04   p_joint 1.674797e-04

Joint ci ratio: 1.367143e-01	ci left: 1.553343e-04	ci right 1.783223e-04	k: 821	n:4930000
Cons ci ratio: 8.063842e-02	ci left: 4.597844e-04	ci right 4.986155e-04	k: 2361	n:4930000
KS ci ratio: 1.096069e-02	ci left: 2.515003e-02	ci right 2.542741e-02	k: 124672	n:4930000
SMAD4   4930000 perm   12103 sec   (407 perm/sec)   p_kst 2.528844e-02   p_cons 4.789047e-04   p_joint 1.665314e-04

Joint ci ratio: 1.363828e-01	ci left: 1.558019e-04	ci right 1.787987e-04	k: 825	n:4940000
Cons ci ratio: 8.057023e-02	ci left: 4.596471e-04	ci right 4.984322e-04	k: 2365	n:4940000
KS ci ratio: 1.095066e-02	ci left: 2.514535e-02	ci right 2.542242e-02	k: 124901	n:4940000
SMAD4   4940000 perm   12147 sec   (407 perm/sec)   p_kst 2.528360e-02   p_cons 4.787449e-04   p_joint 1.670040e-04

Joint ci ratio: 1.363004e-01	ci left: 1.556823e-04	ci right 1.786464e-04	k: 826	n:4950000
Cons ci ratio: 8.053623e-02	ci left: 4.591144e-04	ci right 4.978374e-04	k: 2367	n:4950000
KS ci ratio: 1.094031e-02	ci left: 2.514230e-02	ci right 2.541907e-02	k: 125138	n:4950000
SMAD4   4950000 perm   12196 sec   (406 perm/sec)   p_kst 2.528040e-02   p_cons 4.781818e-04   p_joint 1.668687e-04

Joint ci ratio: 1.361358e-01	ci left: 1.557579e-04	ci right 1.787032e-04	k: 828	n:4960000
Cons ci ratio: 8.040050e-02	ci left: 4.597692e-04	ci right 4.984791e-04	k: 2375	n:4960000
KS ci ratio: 1.092917e-02	ci left: 2.514288e-02	ci right 2.541937e-02	k: 125393	n:4960000
SMAD4   4960000 perm   12244 sec   (405 perm/sec)   p_kst 2.528085e-02   p_cons 4.788306e-04   p_joint 1.669355e-04

Joint ci ratio: 1.360538e-01	ci left: 1.556389e-04	ci right 1.785517e-04	k: 829	n:4970000
Cons ci ratio: 8.036671e-02	ci left: 4.592385e-04	ci right 4.978866e-04	k: 2377	n:4970000
KS ci ratio: 1.091781e-02	ci left: 2.514466e-02	ci right 2.542089e-02	k: 125654	n:4970000
SMAD4   4970000 perm   12290 sec   (404 perm/sec)   p_kst 2.528249e-02   p_cons 4.782696e-04   p_joint 1.668008e-04

Joint ci ratio: 1.360538e-01	ci left: 1.553264e-04	ci right 1.781932e-04	k: 829	n:4980000
Cons ci ratio: 8.031608e-02	ci left: 4.589066e-04	ci right 4.975014e-04	k: 2380	n:4980000
KS ci ratio: 1.090679e-02	ci left: 2.514503e-02	ci right 2.542098e-02	k: 125908	n:4980000
SMAD4   4980000 perm   12338 sec   (404 perm/sec)   p_kst 2.528273e-02   p_cons 4.779116e-04   p_joint 1.664659e-04

Joint ci ratio: 1.360539e-01	ci left: 1.550151e-04	ci right 1.778361e-04	k: 829	n:4990000
Cons ci ratio: 8.021506e-02	ci left: 4.591652e-04	ci right 4.977309e-04	k: 2386	n:4990000
KS ci ratio: 1.089731e-02	ci left: 2.513861e-02	ci right 2.541425e-02	k: 126128	n:4990000
SMAD4   4990000 perm   12383 sec   (403 perm/sec)   p_kst 2.527615e-02   p_cons 4.781563e-04   p_joint 1.661323e-04

Joint ci ratio: 1.397219e-01	ci left: 1.464016e-04	ci right 1.685840e-04	k: 786	n:5000000
Cons ci ratio: 8.014794e-02	ci left: 4.590308e-04	ci right 4.975515e-04	k: 2390	n:5000000
KS ci ratio: 1.088631e-02	ci left: 2.513919e-02	ci right 2.541456e-02	k: 126383	n:5000000
SMAD4   5000000 perm   12429 sec   (402 perm/sec)   p_kst 2.527660e-02   p_cons 4.780000e-04   p_joint 1.572000e-04

Outputting figure to mutsig2_images.part000000000162/SMAD4.29_1703_5000000_0.025277_0.000478_0.0001572.png
                gene_name: SMAD4
               theta_stop: 0.14 
                    nperm: 5000000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.025 
                   p_cons: 0.00048 
      ci_cons_bounds_left: 0.00046 
     ci_cons_bounds_right: 0.00050 
                  p_joint: 0.00016 
     ci_joint_bounds_left: 0.00015 
    ci_joint_bounds_right: 0.00017 

Current progress: 1 percent done.
SMCHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.907736e-02	ci left: 3.798263e-01	ci right 3.990382e-01	k: 3894	n:10000
Cons ci ratio: 2.594231e-02	ci left: 6.862735e-01	ci right 7.044125e-01	k: 6954	n:10000
KS ci ratio: 6.818617e-02	ci left: 2.398567e-01	ci right 2.568901e-01	k: 2483	n:10000
SMCHD1   10000 perm   3 sec   (2890 perm/sec)   p_kst 2.483000e-01   p_cons 6.954000e-01   p_joint 3.894000e-01

Outputting figure to mutsig2_images.part000000000162/SMCHD1.20_6210_10000_0.2483_0.6954_0.3894.png
                gene_name: SMCHD1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 3 percent done.
SLITRK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.081832e-02	ci left: 2.844871e-01	ci right 3.024334e-01	k: 2934	n:10000
Cons ci ratio: 1.346599e-02	ci left: 8.883137e-01	ci right 9.004554e-01	k: 8945	n:10000
KS ci ratio: 8.615640e-02	ci left: 1.640602e-01	ci right 1.789317e-01	k: 1714	n:10000
SLITRK1   10000 perm   2 sec   (4319 perm/sec)   p_kst 1.714000e-01   p_cons 8.945000e-01   p_joint 2.934000e-01

Outputting figure to mutsig2_images.part000000000162/SLITRK1.17_2095_10000_0.1714_0.8945_0.2934.png
                gene_name: SLITRK1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 4 percent done.
SLC9A11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.715155e-02	ci left: 3.989431e-01	ci right 4.183102e-01	k: 4086	n:10000
Cons ci ratio: 8.566287e-03	ci left: 9.502311e-01	ci right 9.585016e-01	k: 9545	n:10000
KS ci ratio: 9.265852e-02	ci left: 1.447212e-01	ci right 1.588823e-01	k: 1517	n:10000
SLC9A11   10000 perm   2 sec   (4143 perm/sec)   p_kst 1.517000e-01   p_cons 9.545000e-01   p_joint 4.086000e-01

Outputting figure to mutsig2_images.part000000000162/SLC9A11.16_3483_10000_0.1517_0.9545_0.4086.png
                gene_name: SLC9A11
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 6 percent done.
SMAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.177092e-01	ci left: 4.232871e-03	ci right 7.265981e-03	k: 56	n:10000
Cons ci ratio: 1.315040e-01	ci left: 7.620996e-02	ci right 8.703524e-02	k: 815	n:10000
KS ci ratio: 4.113205e-01	ci left: 7.153353e-03	ci right 1.094096e-02	k: 89	n:10000
SMAD2   10000 perm   2 sec   (4574 perm/sec)   p_kst 8.900000e-03   p_cons 8.150000e-02   p_joint 5.600000e-03

Joint ci ratio: 4.217842e-01	ci left: 3.396118e-03	ci right 5.252548e-03	k: 85	n:20000
Cons ci ratio: 9.418845e-02	ci left: 7.593396e-02	ci right 8.348877e-02	k: 1593	n:20000
KS ci ratio: 2.993624e-01	ci left: 7.228280e-03	ci right 9.817657e-03	k: 169	n:20000
SMAD2   20000 perm   5 sec   (4130 perm/sec)   p_kst 8.450000e-03   p_cons 7.965000e-02   p_joint 4.250000e-03

Joint ci ratio: 2.849935e-01	ci left: 5.374137e-03	ci right 7.190140e-03	k: 187	n:30000
Cons ci ratio: 7.657496e-02	ci left: 7.724892e-02	ci right 8.343264e-02	k: 2409	n:30000
KS ci ratio: 2.429929e-01	ci left: 7.554950e-03	ci right 9.675195e-03	k: 257	n:30000
SMAD2   30000 perm   8 sec   (3949 perm/sec)   p_kst 8.566667e-03   p_cons 8.030000e-02   p_joint 6.233333e-03

Joint ci ratio: 2.588642e-01	ci left: 4.962423e-03	ci right 6.460707e-03	k: 227	n:40000
Cons ci ratio: 6.645486e-02	ci left: 7.735943e-02	ci right 8.270172e-02	k: 3200	n:40000
KS ci ratio: 2.113705e-01	ci left: 7.623672e-03	ci right 9.448754e-03	k: 340	n:40000
SMAD2   40000 perm   10 sec   (3838 perm/sec)   p_kst 8.500000e-03   p_cons 8.000000e-02   p_joint 5.675000e-03

Joint ci ratio: 2.975131e-01	ci left: 2.945803e-03	ci right 3.993152e-03	k: 172	n:50000
Cons ci ratio: 5.966842e-02	ci left: 7.708413e-02	ci right 8.184483e-02	k: 3972	n:50000
KS ci ratio: 1.911592e-01	ci left: 7.542470e-03	ci right 9.155393e-03	k: 416	n:50000
SMAD2   50000 perm   13 sec   (3751 perm/sec)   p_kst 8.320000e-03   p_cons 7.944000e-02   p_joint 3.440000e-03

Joint ci ratio: 3.094872e-01	ci left: 2.254530e-03	ci right 3.094726e-03	k: 159	n:60000
Cons ci ratio: 5.430647e-02	ci left: 7.772604e-02	ci right 8.208136e-02	k: 4793	n:60000
KS ci ratio: 1.759997e-01	ci left: 7.478004e-03	ci right 8.936833e-03	k: 491	n:60000
SMAD2   60000 perm   16 sec   (3679 perm/sec)   p_kst 8.183333e-03   p_cons 7.988333e-02   p_joint 2.650000e-03

Joint ci ratio: 2.084092e-01	ci left: 4.504494e-03	ci right 5.565744e-03	k: 351	n:70000
Cons ci ratio: 5.025366e-02	ci left: 7.795820e-02	ci right 8.199098e-02	k: 5597	n:70000
KS ci ratio: 1.608387e-01	ci left: 7.737203e-03	ci right 9.104016e-03	k: 588	n:70000
SMAD2   70000 perm   20 sec   (3541 perm/sec)   p_kst 8.400000e-03   p_cons 7.995714e-02   p_joint 5.014286e-03

Joint ci ratio: 1.826434e-01	ci left: 5.201998e-03	ci right 6.259331e-03	k: 457	n:80000
Cons ci ratio: 4.682022e-02	ci left: 7.867317e-02	ci right 8.245732e-02	k: 6444	n:80000
KS ci ratio: 1.482612e-01	ci left: 8.019929e-03	ci right 9.316080e-03	k: 692	n:80000
SMAD2   80000 perm   23 sec   (3492 perm/sec)   p_kst 8.650000e-03   p_cons 8.055000e-02   p_joint 5.712500e-03

Joint ci ratio: 1.707458e-01	ci left: 5.324956e-03	ci right 6.329520e-03	k: 523	n:90000
Cons ci ratio: 3.628182e-02	ci left: 1.127242e-01	ci right 1.169006e-01	k: 10332	n:90000
KS ci ratio: 1.408452e-01	ci left: 7.932005e-03	ci right 9.144435e-03	k: 767	n:90000
SMAD2   90000 perm   26 sec   (3441 perm/sec)   p_kst 8.522222e-03   p_cons 1.148000e-01   p_joint 5.811111e-03

Joint ci ratio: 1.346829e-01	ci left: 7.833968e-03	ci right 8.974821e-03	k: 839	n:100000
Cons ci ratio: 3.446426e-02	ci left: 1.125724e-01	ci right 1.165300e-01	k: 11454	n:100000
KS ci ratio: 1.327056e-01	ci left: 8.075672e-03	ci right 9.233098e-03	k: 864	n:100000
SMAD2   100000 perm   29 sec   (3396 perm/sec)   p_kst 8.640000e-03   p_cons 1.145400e-01   p_joint 8.390000e-03

Joint ci ratio: 1.333814e-01	ci left: 7.271010e-03	ci right 8.318828e-03	k: 856	n:110000
Cons ci ratio: 3.277160e-02	ci left: 1.132106e-01	ci right 1.169915e-01	k: 12660	n:110000
KS ci ratio: 1.269004e-01	ci left: 8.053972e-03	ci right 9.153990e-03	k: 945	n:110000
SMAD2   110000 perm   33 sec   (3351 perm/sec)   p_kst 8.590909e-03   p_cons 1.150909e-01   p_joint 7.781818e-03

Joint ci ratio: 1.163222e-01	ci left: 8.829370e-03	ci right 9.927870e-03	k: 1124	n:120000
Cons ci ratio: 3.135847e-02	ci left: 1.134071e-01	ci right 1.170282e-01	k: 13825	n:120000
KS ci ratio: 1.212021e-01	ci left: 8.117632e-03	ci right 9.172987e-03	k: 1036	n:120000
SMAD2   120000 perm   36 sec   (3303 perm/sec)   p_kst 8.633333e-03   p_cons 1.152083e-01   p_joint 9.366667e-03

Joint ci ratio: 1.102506e-01	ci left: 9.099510e-03	ci right 1.016869e-02	k: 1251	n:130000
Cons ci ratio: 3.006496e-02	ci left: 1.139048e-01	ci right 1.173893e-01	k: 15033	n:130000
KS ci ratio: 1.166263e-01	ci left: 8.112670e-03	ci right 9.124816e-03	k: 1119	n:130000
SMAD2   130000 perm   40 sec   (3260 perm/sec)   p_kst 8.607692e-03   p_cons 1.156385e-01   p_joint 9.623077e-03

Joint ci ratio: 1.090649e-01	ci left: 8.643948e-03	ci right 9.647969e-03	k: 1279	n:140000
Cons ci ratio: 2.895258e-02	ci left: 1.140999e-01	ci right 1.174589e-01	k: 16208	n:140000
KS ci ratio: 1.121102e-01	ci left: 8.171555e-03	ci right 9.148959e-03	k: 1211	n:140000
SMAD2   140000 perm   44 sec   (3216 perm/sec)   p_kst 8.650000e-03   p_cons 1.157714e-01   p_joint 9.135714e-03

Joint ci ratio: 9.934385e-02	ci left: 9.762692e-03	ci right 1.078970e-02	k: 1540	n:150000
Cons ci ratio: 2.794338e-02	ci left: 1.143571e-01	ci right 1.176045e-01	k: 17396	n:150000
KS ci ratio: 1.078727e-01	ci left: 8.255683e-03	ci right 9.203454e-03	k: 1308	n:150000
SMAD2   150000 perm   47 sec   (3172 perm/sec)   p_kst 8.720000e-03   p_cons 1.159733e-01   p_joint 1.026667e-02

Joint ci ratio: 9.879512e-02	ci left: 9.262117e-03	ci right 1.023077e-02	k: 1558	n:160000
Cons ci ratio: 2.710549e-02	ci left: 1.140371e-01	ci right 1.171768e-01	k: 18496	n:160000
KS ci ratio: 1.046087e-01	ci left: 8.244666e-03	ci right 9.160770e-03	k: 1391	n:160000
SMAD2   160000 perm   51 sec   (3117 perm/sec)   p_kst 8.693750e-03   p_cons 1.156000e-01   p_joint 9.737500e-03

Joint ci ratio: 1.040718e-01	ci left: 7.845534e-03	ci right 8.712537e-03	k: 1406	n:170000
Cons ci ratio: 2.631214e-02	ci left: 1.139609e-01	ci right 1.170052e-01	k: 19631	n:170000
KS ci ratio: 1.017285e-01	ci left: 8.218126e-03	ci right 9.104635e-03	k: 1471	n:170000
SMAD2   170000 perm   56 sec   (3051 perm/sec)   p_kst 8.652941e-03   p_cons 1.154765e-01   p_joint 8.270588e-03

Joint ci ratio: 9.462368e-02	ci left: 8.997329e-03	ci right 9.896355e-03	k: 1699	n:180000
Cons ci ratio: 2.560202e-02	ci left: 1.137562e-01	ci right 1.167118e-01	k: 20741	n:180000
KS ci ratio: 9.910596e-02	ci left: 8.189424e-03	ci right 9.048737e-03	k: 1550	n:180000
SMAD2   180000 perm   60 sec   (3013 perm/sec)   p_kst 8.611111e-03   p_cons 1.152278e-01   p_joint 9.438889e-03

Outputting figure to mutsig2_images.part000000000162/SMAD2.16_1444_180000_0.0086111_0.11523_0.0094389.png
                gene_name: SMAD2
               theta_stop: 0.099 
                    nperm: 180000 
                     p_ks: 0.0086 
        ci_ks_bounds_left: 0.0082 
       ci_ks_bounds_right: 0.0090 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.0094 
     ci_joint_bounds_left: 0.0090 
    ci_joint_bounds_right: 0.0099 

Current progress: 7 percent done.
SLIT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.296607e-02	ci left: 3.444222e-01	ci right 3.632630e-01	k: 3538	n:10000
Cons ci ratio: 7.142066e-02	ci left: 2.231634e-01	ci right 2.397933e-01	k: 2314	n:10000
KS ci ratio: 4.718083e-02	ci left: 3.986443e-01	ci right 4.180092e-01	k: 4083	n:10000
SLIT2   10000 perm   3 sec   (3720 perm/sec)   p_kst 4.083000e-01   p_cons 2.314000e-01   p_joint 3.538000e-01

Outputting figure to mutsig2_images.part000000000162/SLIT2.15_4738_10000_0.4083_0.2314_0.3538.png
                gene_name: SLIT2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 9 percent done.
SLC8A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.304386e-02	ci left: 2.153664e-01	ci right 2.317949e-01	k: 2235	n:10000
Cons ci ratio: 7.140060e-02	ci left: 2.232622e-01	ci right 2.398945e-01	k: 2315	n:10000
KS ci ratio: 7.138054e-02	ci left: 2.233609e-01	ci right 2.399957e-01	k: 2316	n:10000
SLC8A1   10000 perm   2 sec   (4523 perm/sec)   p_kst 2.316000e-01   p_cons 2.315000e-01   p_joint 2.235000e-01

Outputting figure to mutsig2_images.part000000000162/SLC8A1.13_3070_10000_0.2316_0.2315_0.2235.png
                gene_name: SLC8A1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 10 percent done.
SLC9A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.438464e-02	ci left: 5.553158e-01	ci right 5.748463e-01	k: 5651	n:10000
KS ci ratio: 3.092731e-02	ci left: 6.066862e-01	ci right 6.258460e-01	k: 6163	n:10000
SLC9A9   10000 perm   2 sec   (4410 perm/sec)   p_kst 6.163000e-01   p_cons 5.651000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLC9A9.13_2002_10000_0.6163_0.5651_1.png
                gene_name: SLC9A9
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
SMC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.218371e-01	ci left: 8.805737e-02	ci right 9.958050e-02	k: 937	n:10000
Cons ci ratio: 5.302402e-02	ci left: 3.439253e-01	ci right 3.627602e-01	k: 3533	n:10000
KS ci ratio: 2.442917e-01	ci left: 2.202897e-02	ci right 2.825186e-02	k: 250	n:10000
SMC4   10000 perm   2 sec   (4015 perm/sec)   p_kst 2.500000e-02   p_cons 3.533000e-01   p_joint 9.370000e-02

Joint ci ratio: 1.218494e-01	ci left: 4.619466e-02	ci right 5.223726e-02	k: 983	n:20000
Cons ci ratio: 3.772438e-02	ci left: 3.439344e-01	ci right 3.572091e-01	k: 7011	n:20000
KS ci ratio: 1.792614e-01	ci left: 2.125382e-02	ci right 2.548631e-02	k: 466	n:20000
SMC4   20000 perm   5 sec   (3668 perm/sec)   p_kst 2.330000e-02   p_cons 3.505500e-01   p_joint 4.915000e-02

Joint ci ratio: 9.219593e-02	ci left: 5.420718e-02	ci right 5.947905e-02	k: 1704	n:30000
Cons ci ratio: 3.084921e-02	ci left: 3.444679e-01	ci right 3.552945e-01	k: 10496	n:30000
KS ci ratio: 1.482750e-01	ci left: 2.107635e-02	ci right 2.448360e-02	k: 682	n:30000
SMC4   30000 perm   9 sec   (3522 perm/sec)   p_kst 2.273333e-02   p_cons 3.498667e-01   p_joint 5.680000e-02

Joint ci ratio: 9.639606e-02	ci left: 3.778311e-02	ci right 4.163408e-02	k: 1587	n:40000
Cons ci ratio: 2.668979e-02	ci left: 3.456483e-01	ci right 3.550234e-01	k: 14013	n:40000
KS ci ratio: 1.312915e-01	ci left: 2.036703e-02	ci right 2.325297e-02	k: 871	n:40000
SMC4   40000 perm   12 sec   (3431 perm/sec)   p_kst 2.177500e-02   p_cons 3.503250e-01   p_joint 3.967500e-02

Joint ci ratio: 9.477844e-02	ci left: 3.150999e-02	ci right 3.466452e-02	k: 1653	n:50000
Cons ci ratio: 2.399264e-02	ci left: 3.438636e-01	ci right 3.522340e-01	k: 17402	n:50000
KS ci ratio: 1.180972e-01	ci left: 2.028534e-02	ci right 2.285063e-02	k: 1077	n:50000
SMC4   50000 perm   15 sec   (3365 perm/sec)   p_kst 2.154000e-02   p_cons 3.480400e-01   p_joint 3.306000e-02

Joint ci ratio: 8.662901e-02	ci left: 3.156861e-02	ci right 3.444346e-02	k: 1979	n:60000
Cons ci ratio: 2.253235e-02	ci left: 3.315056e-01	ci right 3.390770e-01	k: 20117	n:60000
KS ci ratio: 1.082619e-01	ci left: 2.022448e-02	ci right 2.255547e-02	k: 1282	n:60000
SMC4   60000 perm   18 sec   (3298 perm/sec)   p_kst 2.136667e-02   p_cons 3.352833e-01   p_joint 3.298333e-02

Joint ci ratio: 8.367460e-02	ci left: 2.912652e-02	ci right 3.168403e-02	k: 2127	n:70000
Cons ci ratio: 2.089572e-02	ci left: 3.310473e-01	ci right 3.380521e-01	k: 23418	n:70000
KS ci ratio: 1.007077e-01	ci left: 2.011775e-02	ci right 2.226505e-02	k: 1482	n:70000
SMC4   70000 perm   22 sec   (3244 perm/sec)   p_kst 2.117143e-02   p_cons 3.345429e-01   p_joint 3.038571e-02

Joint ci ratio: 7.345501e-02	ci left: 3.311089e-02	ci right 3.564802e-02	k: 2749	n:80000
Cons ci ratio: 1.954921e-02	ci left: 3.312054e-01	ci right 3.377566e-01	k: 26758	n:80000
KS ci ratio: 9.676790e-02	ci left: 1.912647e-02	ci right 2.108355e-02	k: 1607	n:80000
SMC4   80000 perm   25 sec   (3191 perm/sec)   p_kst 2.008750e-02   p_cons 3.344750e-01   p_joint 3.436250e-02

Outputting figure to mutsig2_images.part000000000162/SMC4.13_3959_80000_0.020088_0.33448_0.034362.png
                gene_name: SMC4
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 13 percent done.
SLITRK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.458026e-01	ci left: 2.174701e-02	ci right 2.793403e-02	k: 247	n:10000
Cons ci ratio: 1.645486e-01	ci left: 4.926618e-02	ci right 5.819605e-02	k: 536	n:10000
KS ci ratio: 1.331091e-01	ci left: 7.446484e-02	ci right 8.518145e-02	k: 797	n:10000
SLITRK2   10000 perm   2 sec   (4416 perm/sec)   p_kst 7.970000e-02   p_cons 5.360000e-02   p_joint 2.470000e-02

Joint ci ratio: 1.708341e-01	ci left: 2.345530e-02	ci right 2.788407e-02	k: 512	n:20000
Cons ci ratio: 1.071685e-01	ci left: 5.933027e-02	ci right 6.609755e-02	k: 1253	n:20000
KS ci ratio: 9.330090e-02	ci left: 7.730380e-02	ci right 8.491851e-02	k: 1621	n:20000
SLITRK2   20000 perm   5 sec   (3964 perm/sec)   p_kst 8.105000e-02   p_cons 6.265000e-02   p_joint 2.560000e-02

Joint ci ratio: 1.135611e-01	ci left: 3.602672e-02	ci right 4.039662e-02	k: 1145	n:30000
Cons ci ratio: 8.703532e-02	ci left: 6.057029e-02	ci right 6.611464e-02	k: 1899	n:30000
KS ci ratio: 7.685270e-02	ci left: 7.672497e-02	ci right 8.289002e-02	k: 2393	n:30000
SLITRK2   30000 perm   8 sec   (3803 perm/sec)   p_kst 7.976667e-02   p_cons 6.330000e-02   p_joint 3.816667e-02

Joint ci ratio: 9.521588e-02	ci left: 3.871123e-02	ci right 4.260581e-02	k: 1625	n:40000
Cons ci ratio: 7.495478e-02	ci left: 6.159612e-02	ci right 6.641741e-02	k: 2559	n:40000
KS ci ratio: 6.324473e-02	ci left: 8.484698e-02	ci right 9.041306e-02	k: 3504	n:40000
SLITRK2   40000 perm   11 sec   (3698 perm/sec)   p_kst 8.760000e-02   p_cons 6.397500e-02   p_joint 4.062500e-02

Outputting figure to mutsig2_images.part000000000162/SLITRK2.12_2542_40000_0.0876_0.063975_0.040625.png
                gene_name: SLITRK2
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.090 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.043 

Current progress: 14 percent done.
SLITRK6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.092731e-02	ci left: 6.066862e-01	ci right 6.258460e-01	k: 6163	n:10000
Cons ci ratio: 7.124049e-02	ci left: 2.240520e-01	ci right 2.407042e-01	k: 2323	n:10000
KS ci ratio: 2.463854e-02	ci left: 7.078571e-01	ci right 7.256165e-01	k: 7168	n:10000
SLITRK6   10000 perm   2 sec   (4338 perm/sec)   p_kst 7.168000e-01   p_cons 2.323000e-01   p_joint 6.163000e-01

Outputting figure to mutsig2_images.part000000000162/SLITRK6.12_2530_10000_0.7168_0.2323_0.6163.png
                gene_name: SLITRK6
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 16 percent done.
SLCO1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.971858e-03	ci left: 9.458575e-01	ci right 9.544778e-01	k: 9503	n:10000
Cons ci ratio: 3.177040e-02	ci left: 5.938334e-01	ci right 6.131063e-01	k: 6035	n:10000
KS ci ratio: 3.480620e-02	ci left: 5.493028e-01	ci right 5.688627e-01	k: 5591	n:10000
SLCO1B1   10000 perm   2 sec   (4670 perm/sec)   p_kst 5.591000e-01   p_cons 6.035000e-01   p_joint 9.503000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO1B1.11_2132_10000_0.5591_0.6035_0.9503.png
                gene_name: SLCO1B1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 17 percent done.
SLCO4C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.282482e-02	ci left: 7.381561e-01	ci right 7.553000e-01	k: 7468	n:10000
Cons ci ratio: 6.437385e-02	ci left: 2.617124e-01	ci right 2.792215e-01	k: 2704	n:10000
KS ci ratio: 2.462640e-02	ci left: 7.080589e-01	ci right 7.258146e-01	k: 7170	n:10000
SLCO4C1   10000 perm   2 sec   (4922 perm/sec)   p_kst 7.170000e-01   p_cons 2.704000e-01   p_joint 7.468000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO4C1.11_2227_10000_0.717_0.2704_0.7468.png
                gene_name: SLCO4C1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 19 percent done.
SLCO6A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.734486e-02	ci left: 8.289004e-01	ci right 8.435032e-01	k: 8363	n:10000
Cons ci ratio: 4.068814e-02	ci left: 4.714637e-01	ci right 4.911472e-01	k: 4813	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
SLCO6A1   10000 perm   2 sec   (4701 perm/sec)   p_kst 1   p_cons 4.813000e-01   p_joint 8.363000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO6A1.11_2212_10000_1_0.4813_0.8363.png
                gene_name: SLCO6A1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 20 percent done.
SLIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
Cons ci ratio: 4.884054e-01	ci left: 4.844389e-03	ci right 8.053335e-03	k: 63	n:10000
KS ci ratio: 5.529567e-01	ci left: 3.627180e-03	ci right 6.472945e-03	k: 49	n:10000
SLIT1   10000 perm   3 sec   (3990 perm/sec)   p_kst 4.900000e-03   p_cons 6.300000e-03   p_joint 8.800000e-03

Joint ci ratio: 3.509248e-01	ci left: 5.113783e-03	ci right 7.333458e-03	k: 123	n:20000
Cons ci ratio: 3.727189e-01	ci left: 4.477090e-03	ci right 6.570623e-03	k: 109	n:20000
KS ci ratio: 4.012173e-01	ci left: 3.799699e-03	ci right 5.748583e-03	k: 94	n:20000
SLIT1   20000 perm   5 sec   (3675 perm/sec)   p_kst 4.700000e-03   p_cons 5.450000e-03   p_joint 6.150000e-03

Joint ci ratio: 3.616908e-01	ci left: 3.196122e-03	ci right 4.635909e-03	k: 116	n:30000
Cons ci ratio: 3.071465e-01	ci left: 4.571451e-03	ci right 6.259842e-03	k: 161	n:30000
KS ci ratio: 3.366144e-01	ci left: 3.743736e-03	ci right 5.287973e-03	k: 134	n:30000
SLIT1   30000 perm   8 sec   (3544 perm/sec)   p_kst 4.466667e-03   p_cons 5.366667e-03   p_joint 3.866667e-03

Joint ci ratio: 4.222446e-01	ci left: 1.697716e-03	ci right 2.626935e-03	k: 85	n:40000
Cons ci ratio: 2.647682e-01	ci left: 4.728754e-03	ci right 6.194449e-03	k: 217	n:40000
KS ci ratio: 2.778885e-01	ci left: 4.262604e-03	ci right 5.660752e-03	k: 197	n:40000
SLIT1   40000 perm   12 sec   (3449 perm/sec)   p_kst 4.925000e-03   p_cons 5.425000e-03   p_joint 2.125000e-03

Joint ci ratio: 3.896565e-01	ci left: 1.627567e-03	ci right 2.432010e-03	k: 100	n:50000
Cons ci ratio: 2.401623e-01	ci left: 4.663632e-03	ci right 5.954827e-03	k: 264	n:50000
KS ci ratio: 2.477981e-01	ci left: 4.363108e-03	ci right 5.615426e-03	k: 248	n:50000
SLIT1   50000 perm   15 sec   (3372 perm/sec)   p_kst 4.960000e-03   p_cons 5.280000e-03   p_joint 2.000000e-03

Joint ci ratio: 3.751236e-01	ci left: 1.476801e-03	ci right 2.172806e-03	k: 108	n:60000
Cons ci ratio: 2.238855e-01	ci left: 4.514274e-03	ci right 5.667729e-03	k: 304	n:60000
KS ci ratio: 2.257529e-01	ci left: 4.435614e-03	ci right 5.579739e-03	k: 299	n:60000
SLIT1   60000 perm   18 sec   (3302 perm/sec)   p_kst 4.983333e-03   p_cons 5.066667e-03   p_joint 1.800000e-03

Joint ci ratio: 3.434849e-01	ci left: 1.538806e-03	ci right 2.189314e-03	k: 129	n:70000
Cons ci ratio: 2.093076e-01	ci left: 4.463869e-03	ci right 5.520662e-03	k: 348	n:70000
KS ci ratio: 2.228692e-01	ci left: 3.909697e-03	ci right 4.903503e-03	k: 307	n:70000
SLIT1   70000 perm   22 sec   (3242 perm/sec)   p_kst 4.385714e-03   p_cons 4.971429e-03   p_joint 1.842857e-03

Joint ci ratio: 3.804894e-01	ci left: 1.073617e-03	ci right 1.588642e-03	k: 105	n:80000
Cons ci ratio: 1.995597e-01	ci left: 4.320966e-03	ci right 5.290483e-03	k: 383	n:80000
KS ci ratio: 1.969986e-01	ci left: 4.439786e-03	ci right 5.421645e-03	k: 393	n:80000
SLIT1   80000 perm   25 sec   (3186 perm/sec)   p_kst 4.912500e-03   p_cons 4.787500e-03   p_joint 1.312500e-03

Joint ci ratio: 2.237090e-01	ci left: 3.019736e-03	ci right 3.790597e-03	k: 305	n:90000
Cons ci ratio: 1.600360e-01	ci left: 6.092059e-03	ci right 7.162336e-03	k: 595	n:90000
KS ci ratio: 1.868475e-01	ci left: 4.411880e-03	ci right 5.331590e-03	k: 437	n:90000
SLIT1   90000 perm   29 sec   (3137 perm/sec)   p_kst 4.855556e-03   p_cons 6.611111e-03   p_joint 3.388889e-03

Joint ci ratio: 2.215787e-01	ci left: 2.774376e-03	ci right 3.474935e-03	k: 311	n:100000
Cons ci ratio: 1.505948e-01	ci left: 6.222979e-03	ci right 7.245947e-03	k: 672	n:100000
KS ci ratio: 1.788667e-01	ci left: 4.352376e-03	ci right 5.216733e-03	k: 477	n:100000
SLIT1   100000 perm   32 sec   (3092 perm/sec)   p_kst 4.770000e-03   p_cons 6.720000e-03   p_joint 3.110000e-03

Joint ci ratio: 2.141660e-01	ci left: 2.711239e-03	ci right 3.369941e-03	k: 333	n:110000
Cons ci ratio: 1.434209e-01	ci left: 6.261471e-03	ci right 7.237536e-03	k: 741	n:110000
KS ci ratio: 1.711654e-01	ci left: 4.339186e-03	ci right 5.159989e-03	k: 521	n:110000
SLIT1   110000 perm   36 sec   (3045 perm/sec)   p_kst 4.736364e-03   p_cons 6.736364e-03   p_joint 3.027273e-03

Joint ci ratio: 2.356838e-01	ci left: 2.029050e-03	ci right 2.578779e-03	k: 275	n:120000
Cons ci ratio: 1.373539e-01	ci left: 6.278413e-03	ci right 7.212331e-03	k: 808	n:120000
KS ci ratio: 1.663101e-01	ci left: 4.224991e-03	ci right 4.999249e-03	k: 552	n:120000
SLIT1   120000 perm   40 sec   (3007 perm/sec)   p_kst 4.600000e-03   p_cons 6.733333e-03   p_joint 2.291667e-03

Joint ci ratio: 4.130596e-01	ci left: 5.498373e-04	ci right 8.424116e-04	k: 89	n:130000
Cons ci ratio: 1.476561e-01	ci left: 4.994020e-03	ci right 5.797516e-03	k: 700	n:130000
KS ci ratio: 1.602003e-01	ci left: 4.217248e-03	ci right 4.958963e-03	k: 595	n:130000
SLIT1   130000 perm   44 sec   (2965 perm/sec)   p_kst 4.576923e-03   p_cons 5.384615e-03   p_joint 6.846154e-04

Joint ci ratio: 4.063486e-01	ci left: 5.297817e-04	ci right 8.058674e-04	k: 92	n:140000
Cons ci ratio: 1.418064e-01	ci left: 5.043484e-03	ci right 5.820073e-03	k: 759	n:140000
KS ci ratio: 1.549618e-01	ci left: 4.197323e-03	ci right 4.909151e-03	k: 636	n:140000
SLIT1   140000 perm   48 sec   (2927 perm/sec)   p_kst 4.542857e-03   p_cons 5.421429e-03   p_joint 6.571429e-04

Joint ci ratio: 3.736190e-01	ci left: 5.967057e-04	ci right 8.765106e-04	k: 109	n:150000
Cons ci ratio: 1.492140e-01	ci left: 4.238159e-03	ci right 4.927873e-03	k: 686	n:150000
KS ci ratio: 1.547416e-01	ci left: 3.930276e-03	ci right 4.595778e-03	k: 638	n:150000
SLIT1   150000 perm   52 sec   (2889 perm/sec)   p_kst 4.253333e-03   p_cons 4.573333e-03   p_joint 7.266667e-04

Joint ci ratio: 3.861235e-01	ci left: 5.198340e-04	ci right 7.738287e-04	k: 102	n:160000
Cons ci ratio: 1.441600e-01	ci left: 4.268290e-03	ci right 4.937356e-03	k: 735	n:160000
KS ci ratio: 1.495638e-01	ci left: 3.955181e-03	ci right 4.600486e-03	k: 683	n:160000
SLIT1   160000 perm   56 sec   (2853 perm/sec)   p_kst 4.268750e-03   p_cons 4.593750e-03   p_joint 6.375000e-04

Joint ci ratio: 2.507714e-01	ci left: 1.255430e-03	ci right 1.620736e-03	k: 243	n:170000
Cons ci ratio: 1.393198e-01	ci left: 4.312257e-03	ci right 4.963637e-03	k: 787	n:170000
KS ci ratio: 1.461880e-01	ci left: 3.903786e-03	ci right 4.525074e-03	k: 715	n:170000
SLIT1   170000 perm   60 sec   (2813 perm/sec)   p_kst 4.205882e-03   p_cons 4.629412e-03   p_joint 1.429412e-03

Joint ci ratio: 2.424653e-01	ci left: 1.274294e-03	ci right 1.630961e-03	k: 260	n:180000
Cons ci ratio: 1.352605e-01	ci left: 4.330198e-03	ci right 4.963696e-03	k: 835	n:180000
KS ci ratio: 1.417988e-01	ci left: 3.927907e-03	ci right 4.532677e-03	k: 760	n:180000
SLIT1   180000 perm   65 sec   (2774 perm/sec)   p_kst 4.222222e-03   p_cons 4.638889e-03   p_joint 1.444444e-03

Joint ci ratio: 2.370781e-01	ci left: 1.266590e-03	ci right 1.612067e-03	k: 272	n:190000
Cons ci ratio: 1.308688e-01	ci left: 4.392317e-03	ci right 5.012417e-03	k: 892	n:190000
KS ci ratio: 1.390884e-01	ci left: 3.873514e-03	ci right 4.457564e-03	k: 790	n:190000
SLIT1   190000 perm   69 sec   (2742 perm/sec)   p_kst 4.157895e-03   p_cons 4.694737e-03   p_joint 1.431579e-03

Joint ci ratio: 2.320347e-01	ci left: 1.259734e-03	ci right 1.594984e-03	k: 284	n:200000
Cons ci ratio: 1.281040e-01	ci left: 4.361380e-03	ci right 4.963115e-03	k: 931	n:200000
KS ci ratio: 1.364441e-01	ci left: 3.829490e-03	ci right 4.395032e-03	k: 821	n:200000
SLIT1   200000 perm   74 sec   (2709 perm/sec)   p_kst 4.105000e-03   p_cons 4.655000e-03   p_joint 1.420000e-03

Joint ci ratio: 2.273000e-01	ci left: 1.253602e-03	ci right 1.579458e-03	k: 296	n:210000
Cons ci ratio: 1.075546e-01	ci left: 5.947505e-03	ci right 6.628136e-03	k: 1319	n:210000
KS ci ratio: 1.333966e-01	ci left: 3.821977e-03	ci right 4.372803e-03	k: 859	n:210000
SLIT1   210000 perm   79 sec   (2673 perm/sec)   p_kst 4.090476e-03   p_cons 6.280952e-03   p_joint 1.409524e-03

Joint ci ratio: 2.254153e-01	ci left: 1.218056e-03	ci right 1.531682e-03	k: 301	n:220000
Cons ci ratio: 1.046960e-01	ci left: 6.000183e-03	ci right 6.667470e-03	k: 1392	n:220000
KS ci ratio: 1.293211e-01	ci left: 3.890045e-03	ci right 4.432238e-03	k: 914	n:220000
SLIT1   220000 perm   83 sec   (2638 perm/sec)   p_kst 4.154545e-03   p_cons 6.327273e-03   p_joint 1.368182e-03

Joint ci ratio: 2.014569e-01	ci left: 1.477943e-03	ci right 1.813078e-03	k: 377	n:230000
Cons ci ratio: 1.068137e-01	ci left: 5.510658e-03	ci right 6.136677e-03	k: 1338	n:230000
KS ci ratio: 1.267176e-01	ci left: 3.880837e-03	ci right 4.410040e-03	k: 952	n:230000
SLIT1   230000 perm   88 sec   (2606 perm/sec)   p_kst 4.139130e-03   p_cons 5.817391e-03   p_joint 1.639130e-03

Joint ci ratio: 2.025400e-01	ci left: 1.400533e-03	ci right 1.720032e-03	k: 373	n:240000
Cons ci ratio: 1.041612e-01	ci left: 5.560970e-03	ci right 6.176056e-03	k: 1407	n:240000
KS ci ratio: 1.244546e-01	ci left: 3.860385e-03	ci right 4.376704e-03	k: 987	n:240000
SLIT1   240000 perm   93 sec   (2578 perm/sec)   p_kst 4.112500e-03   p_cons 5.862500e-03   p_joint 1.554167e-03

Joint ci ratio: 1.996274e-01	ci left: 1.386295e-03	ci right 1.697445e-03	k: 384	n:250000
Cons ci ratio: 1.026807e-01	ci left: 5.498279e-03	ci right 6.097265e-03	k: 1448	n:250000
KS ci ratio: 1.218906e-01	ci left: 3.868794e-03	ci right 4.374808e-03	k: 1029	n:250000
SLIT1   250000 perm   98 sec   (2550 perm/sec)   p_kst 4.116000e-03   p_cons 5.792000e-03   p_joint 1.536000e-03

Joint ci ratio: 1.965885e-01	ci left: 1.376840e-03	ci right 1.680600e-03	k: 396	n:260000
Cons ci ratio: 1.001851e-01	ci left: 5.560463e-03	ci right 6.150634e-03	k: 1521	n:260000
KS ci ratio: 1.195908e-01	ci left: 3.869194e-03	ci right 4.365037e-03	k: 1069	n:260000
SLIT1   260000 perm   103 sec   (2524 perm/sec)   p_kst 4.111538e-03   p_cons 5.850000e-03   p_joint 1.523077e-03

Joint ci ratio: 2.004223e-01	ci left: 1.273044e-03	ci right 1.560052e-03	k: 381	n:270000
Cons ci ratio: 9.836046e-02	ci left: 5.560389e-03	ci right 6.139184e-03	k: 1578	n:270000
KS ci ratio: 1.173105e-01	ci left: 3.876838e-03	ci right 4.363530e-03	k: 1111	n:270000
SLIT1   270000 perm   108 sec   (2497 perm/sec)   p_kst 4.114815e-03   p_cons 5.844444e-03   p_joint 1.411111e-03

Joint ci ratio: 1.981041e-01	ci left: 1.258116e-03	ci right 1.538081e-03	k: 390	n:280000
Cons ci ratio: 9.669151e-02	ci left: 5.553440e-03	ci right 6.121147e-03	k: 1633	n:280000
KS ci ratio: 1.150057e-01	ci left: 3.894427e-03	ci right 4.373069e-03	k: 1156	n:280000
SLIT1   280000 perm   113 sec   (2472 perm/sec)   p_kst 4.128571e-03   p_cons 5.832143e-03   p_joint 1.392857e-03

Joint ci ratio: 1.981089e-01	ci left: 1.214730e-03	ci right 1.485048e-03	k: 390	n:290000
Cons ci ratio: 9.476670e-02	ci left: 5.587450e-03	ci right 6.146632e-03	k: 1700	n:290000
KS ci ratio: 1.133537e-01	ci left: 3.874027e-03	ci right 4.342865e-03	k: 1190	n:290000
SLIT1   290000 perm   119 sec   (2446 perm/sec)   p_kst 4.103448e-03   p_cons 5.862069e-03   p_joint 1.344828e-03

Joint ci ratio: 2.006998e-01	ci left: 1.142566e-03	ci right 1.400557e-03	k: 380	n:300000
Cons ci ratio: 9.316469e-02	ci left: 5.593247e-03	ci right 6.143031e-03	k: 1759	n:300000
KS ci ratio: 1.113609e-01	ci left: 3.884199e-03	ci right 4.345462e-03	k: 1233	n:300000
SLIT1   300000 perm   124 sec   (2421 perm/sec)   p_kst 4.110000e-03   p_cons 5.863333e-03   p_joint 1.266667e-03

Joint ci ratio: 2.258350e-01	ci left: 8.613647e-04	ci right 1.083618e-03	k: 300	n:310000
Cons ci ratio: 9.138892e-02	ci left: 5.630269e-03	ci right 6.172579e-03	k: 1828	n:310000
KS ci ratio: 1.097288e-01	ci left: 3.874956e-03	ci right 4.327940e-03	k: 1270	n:310000
SLIT1   310000 perm   129 sec   (2397 perm/sec)   p_kst 4.096774e-03   p_cons 5.896774e-03   p_joint 9.677419e-04

Joint ci ratio: 2.228930e-01	ci left: 8.580419e-04	ci right 1.076158e-03	k: 308	n:320000
Cons ci ratio: 8.978237e-02	ci left: 5.655904e-03	ci right 6.190603e-03	k: 1894	n:320000
KS ci ratio: 1.074266e-01	ci left: 3.921076e-03	ci right 4.369227e-03	k: 1325	n:320000
SLIT1   320000 perm   135 sec   (2365 perm/sec)   p_kst 4.140625e-03   p_cons 5.918750e-03   p_joint 9.625000e-04

Joint ci ratio: 2.289068e-01	ci left: 7.862954e-04	ci right 9.923286e-04	k: 292	n:330000
Cons ci ratio: 8.839379e-02	ci left: 5.662281e-03	ci right 6.188876e-03	k: 1954	n:330000
KS ci ratio: 1.055325e-01	ci left: 3.943839e-03	ci right 4.386151e-03	k: 1373	n:330000
SLIT1   330000 perm   141 sec   (2342 perm/sec)   p_kst 4.160606e-03   p_cons 5.921212e-03   p_joint 8.848485e-04

Joint ci ratio: 2.269796e-01	ci left: 7.770349e-04	ci right 9.786873e-04	k: 297	n:340000
Cons ci ratio: 8.672203e-02	ci left: 5.714385e-03	ci right 6.235266e-03	k: 2030	n:340000
KS ci ratio: 1.045503e-01	ci left: 3.902300e-03	ci right 4.335630e-03	k: 1399	n:340000
SLIT1   340000 perm   147 sec   (2319 perm/sec)   p_kst 4.114706e-03   p_cons 5.970588e-03   p_joint 8.735294e-04

Joint ci ratio: 2.296986e-01	ci left: 7.359760e-04	ci right 9.295854e-04	k: 290	n:350000
Cons ci ratio: 8.571652e-02	ci left: 5.685299e-03	ci right 6.197219e-03	k: 2078	n:350000
KS ci ratio: 1.030882e-01	ci left: 3.902124e-03	ci right 4.329007e-03	k: 1439	n:350000
SLIT1   350000 perm   153 sec   (2295 perm/sec)   p_kst 4.111429e-03   p_cons 5.937143e-03   p_joint 8.285714e-04

Joint ci ratio: 2.308955e-01	ci left: 7.076784e-04	ci right 8.949520e-04	k: 287	n:360000
Cons ci ratio: 8.442633e-02	ci left: 5.701371e-03	ci right 6.206631e-03	k: 2142	n:360000
KS ci ratio: 1.016513e-01	ci left: 3.904705e-03	ci right 4.325561e-03	k: 1480	n:360000
SLIT1   360000 perm   158 sec   (2273 perm/sec)   p_kst 4.111111e-03   p_cons 5.950000e-03   p_joint 7.972222e-04

Joint ci ratio: 2.281399e-01	ci left: 7.063831e-04	ci right 8.907690e-04	k: 294	n:370000
Cons ci ratio: 8.340204e-02	ci left: 5.687516e-03	ci right 6.185135e-03	k: 2195	n:370000
KS ci ratio: 1.003059e-01	ci left: 3.904550e-03	ci right 4.319491e-03	k: 1520	n:370000
SLIT1   370000 perm   164 sec   (2252 perm/sec)   p_kst 4.108108e-03   p_cons 5.932432e-03   p_joint 7.945946e-04

Joint ci ratio: 2.273723e-01	ci left: 6.927564e-04	ci right 8.728915e-04	k: 296	n:380000
Cons ci ratio: 8.204796e-02	ci left: 5.725980e-03	ci right 6.218441e-03	k: 2268	n:380000
KS ci ratio: 9.885369e-02	ci left: 3.917272e-03	ci right 4.327189e-03	k: 1565	n:380000
SLIT1   380000 perm   170 sec   (2229 perm/sec)   p_kst 4.118421e-03   p_cons 5.968421e-03   p_joint 7.789474e-04

Joint ci ratio: 2.371658e-01	ci left: 6.170311e-04	ci right 7.854024e-04	k: 272	n:390000
Cons ci ratio: 8.673399e-02	ci left: 4.984199e-03	ci right 5.438585e-03	k: 2031	n:390000
KS ci ratio: 9.728106e-02	ci left: 3.944394e-03	ci right 4.350208e-03	k: 1616	n:390000
SLIT1   390000 perm   177 sec   (2209 perm/sec)   p_kst 4.143590e-03   p_cons 5.207692e-03   p_joint 6.974359e-04

Joint ci ratio: 2.329371e-01	ci left: 6.251336e-04	ci right 7.922364e-04	k: 282	n:400000
Cons ci ratio: 8.548030e-02	ci left: 5.006366e-03	ci right 5.455847e-03	k: 2091	n:400000
KS ci ratio: 9.612902e-02	ci left: 3.940925e-03	ci right 4.341310e-03	k: 1655	n:400000
SLIT1   400000 perm   183 sec   (2188 perm/sec)   p_kst 4.137500e-03   p_cons 5.227500e-03   p_joint 7.050000e-04

Joint ci ratio: 2.425644e-01	ci left: 5.594204e-04	ci right 7.160693e-04	k: 260	n:410000
Cons ci ratio: 8.441757e-02	ci left: 5.010782e-03	ci right 5.454791e-03	k: 2144	n:410000
KS ci ratio: 9.524291e-02	ci left: 3.918603e-03	ci right 4.312846e-03	k: 1686	n:410000
SLIT1   410000 perm   189 sec   (2168 perm/sec)   p_kst 4.112195e-03   p_cons 5.229268e-03   p_joint 6.341463e-04

Joint ci ratio: 2.435015e-01	ci left: 5.416283e-04	ci right 6.939696e-04	k: 258	n:420000
Cons ci ratio: 8.348904e-02	ci left: 5.003363e-03	ci right 5.441600e-03	k: 2192	n:420000
KS ci ratio: 9.432574e-02	ci left: 3.902011e-03	ci right 4.290594e-03	k: 1719	n:420000
SLIT1   420000 perm   196 sec   (2148 perm/sec)   p_kst 4.092857e-03   p_cons 5.219048e-03   p_joint 6.142857e-04

Joint ci ratio: 2.416433e-01	ci left: 5.377691e-04	ci right 6.876976e-04	k: 262	n:430000
Cons ci ratio: 8.238747e-02	ci left: 5.021371e-03	ci right 5.455104e-03	k: 2251	n:430000
KS ci ratio: 9.346133e-02	ci left: 3.883935e-03	ci right 4.266981e-03	k: 1751	n:430000
SLIT1   430000 perm   202 sec   (2126 perm/sec)   p_kst 4.072093e-03   p_cons 5.234884e-03   p_joint 6.093023e-04

Joint ci ratio: 2.371753e-01	ci left: 5.469115e-04	ci right 6.961556e-04	k: 272	n:440000
Cons ci ratio: 8.132837e-02	ci left: 5.038597e-03	ci right 5.467958e-03	k: 2310	n:440000
KS ci ratio: 9.228325e-02	ci left: 3.895563e-03	ci right 4.274650e-03	k: 1796	n:440000
SLIT1   440000 perm   209 sec   (2106 perm/sec)   p_kst 4.081818e-03   p_cons 5.250000e-03   p_joint 6.181818e-04

Joint ci ratio: 2.380511e-01	ci left: 5.305775e-04	ci right 6.759777e-04	k: 270	n:450000
Cons ci ratio: 8.047996e-02	ci left: 5.033314e-03	ci right 5.457540e-03	k: 2359	n:450000
KS ci ratio: 9.097521e-02	ci left: 3.921904e-03	ci right 4.297858e-03	k: 1848	n:450000
SLIT1   450000 perm   216 sec   (2086 perm/sec)   p_kst 4.106667e-03   p_cons 5.242222e-03   p_joint 6.000000e-04

Joint ci ratio: 2.350347e-01	ci left: 5.333589e-04	ci right 6.774000e-04	k: 277	n:460000
Cons ci ratio: 7.945886e-02	ci left: 5.053853e-03	ci right 5.474155e-03	k: 2420	n:460000
KS ci ratio: 8.972125e-02	ci left: 3.947137e-03	ci right 4.320021e-03	k: 1900	n:460000
SLIT1   460000 perm   223 sec   (2067 perm/sec)   p_kst 4.130435e-03   p_cons 5.260870e-03   p_joint 6.021739e-04

Joint ci ratio: 2.329494e-01	ci left: 5.320255e-04	ci right 6.742481e-04	k: 282	n:470000
Cons ci ratio: 7.857119e-02	ci left: 5.061033e-03	ci right 5.477016e-03	k: 2475	n:470000
KS ci ratio: 8.893020e-02	ci left: 3.933879e-03	ci right 4.302063e-03	k: 1934	n:470000
SLIT1   470000 perm   229 sec   (2049 perm/sec)   p_kst 4.114894e-03   p_cons 5.265957e-03   p_joint 6.000000e-04

Joint ci ratio: 2.313209e-01	ci left: 5.287903e-04	ci right 6.690186e-04	k: 286	n:480000
Cons ci ratio: 7.796073e-02	ci left: 5.035252e-03	ci right 5.445754e-03	k: 2514	n:480000
KS ci ratio: 8.811479e-02	ci left: 3.925262e-03	ci right 4.289097e-03	k: 1970	n:480000
SLIT1   480000 perm   236 sec   (2030 perm/sec)   p_kst 4.104167e-03   p_cons 5.237500e-03   p_joint 5.958333e-04

Joint ci ratio: 1.595363e-01	ci left: 1.132431e-03	ci right 1.330685e-03	k: 602	n:490000
Cons ci ratio: 7.710672e-02	ci left: 5.044563e-03	ci right 5.451117e-03	k: 2570	n:490000
KS ci ratio: 8.719063e-02	ci left: 3.928990e-03	ci right 4.289157e-03	k: 2012	n:490000
SLIT1   490000 perm   243 sec   (2013 perm/sec)   p_kst 4.106122e-03   p_cons 5.244898e-03   p_joint 1.228571e-03

Joint ci ratio: 1.602047e-01	ci left: 1.100181e-03	ci right 1.293674e-03	k: 597	n:500000
Cons ci ratio: 7.632400e-02	ci left: 5.047638e-03	ci right 5.450127e-03	k: 2623	n:500000
KS ci ratio: 8.633715e-02	ci left: 3.928674e-03	ci right 4.285109e-03	k: 2052	n:500000
SLIT1   500000 perm   251 sec   (1995 perm/sec)   p_kst 4.104000e-03   p_cons 5.246000e-03   p_joint 1.194000e-03

Joint ci ratio: 1.590130e-01	ci left: 1.095551e-03	ci right 1.286659e-03	k: 606	n:510000
Cons ci ratio: 7.559304e-02	ci left: 5.046766e-03	ci right 5.445161e-03	k: 2674	n:510000
KS ci ratio: 8.548775e-02	ci left: 3.930307e-03	ci right 4.283207e-03	k: 2093	n:510000
SLIT1   510000 perm   258 sec   (1978 perm/sec)   p_kst 4.103922e-03   p_cons 5.243137e-03   p_joint 1.188235e-03

Joint ci ratio: 1.621195e-01	ci left: 1.032026e-03	ci right 1.215913e-03	k: 583	n:520000
Cons ci ratio: 7.488268e-02	ci left: 5.045944e-03	ci right 5.440369e-03	k: 2725	n:520000
KS ci ratio: 8.472273e-02	ci left: 3.926245e-03	ci right 4.275469e-03	k: 2131	n:520000
SLIT1   520000 perm   265 sec   (1961 perm/sec)   p_kst 4.098077e-03   p_cons 5.240385e-03   p_joint 1.121154e-03

Joint ci ratio: 1.604790e-01	ci left: 1.034281e-03	ci right 1.216526e-03	k: 595	n:530000
Cons ci ratio: 7.412493e-02	ci left: 5.054430e-03	ci right 5.445348e-03	k: 2781	n:530000
KS ci ratio: 8.401676e-02	ci left: 3.918656e-03	ci right 4.264158e-03	k: 2167	n:530000
SLIT1   530000 perm   273 sec   (1945 perm/sec)   p_kst 4.088679e-03   p_cons 5.247170e-03   p_joint 1.122642e-03

Joint ci ratio: 1.594132e-01	ci left: 1.029350e-03	ci right 1.209405e-03	k: 603	n:540000
Cons ci ratio: 7.329890e-02	ci left: 5.075348e-03	ci right 5.463323e-03	k: 2844	n:540000
KS ci ratio: 8.321450e-02	ci left: 3.922240e-03	ci right 4.264596e-03	k: 2209	n:540000
SLIT1   540000 perm   280 sec   (1929 perm/sec)   p_kst 4.090741e-03   p_cons 5.266667e-03   p_joint 1.116667e-03

Joint ci ratio: 1.578527e-01	ci left: 1.031586e-03	ci right 1.210099e-03	k: 615	n:550000
Cons ci ratio: 7.258777e-02	ci left: 5.083030e-03	ci right 5.467664e-03	k: 2900	n:550000
KS ci ratio: 8.245317e-02	ci left: 3.923928e-03	ci right 4.263147e-03	k: 2250	n:550000
SLIT1   550000 perm   287 sec   (1914 perm/sec)   p_kst 4.090909e-03   p_cons 5.272727e-03   p_joint 1.118182e-03

Joint ci ratio: 1.567123e-01	ci left: 1.028604e-03	ci right 1.205194e-03	k: 624	n:560000
Cons ci ratio: 7.197037e-02	ci left: 5.079934e-03	ci right 5.460927e-03	k: 2950	n:560000
KS ci ratio: 8.162302e-02	ci left: 3.934316e-03	ci right 4.270846e-03	k: 2296	n:560000
SLIT1   560000 perm   295 sec   (1898 perm/sec)   p_kst 4.100000e-03   p_cons 5.267857e-03   p_joint 1.114286e-03

Joint ci ratio: 2.642351e-01	ci left: 3.350143e-04	ci right 4.385955e-04	k: 219	n:570000
Cons ci ratio: 7.117797e-02	ci left: 5.104531e-03	ci right 5.482980e-03	k: 3016	n:570000
KS ci ratio: 8.173322e-02	ci left: 3.854975e-03	ci right 4.185185e-03	k: 2290	n:570000
SLIT1   570000 perm   303 sec   (1883 perm/sec)   p_kst 4.017544e-03   p_cons 5.291228e-03   p_joint 3.842105e-04

Joint ci ratio: 2.630426e-01	ci left: 3.324586e-04	ci right 4.347092e-04	k: 221	n:580000
Cons ci ratio: 7.057245e-02	ci left: 5.104588e-03	ci right 5.479690e-03	k: 3068	n:580000
KS ci ratio: 8.095921e-02	ci left: 3.862830e-03	ci right 4.190431e-03	k: 2334	n:580000
SLIT1   580000 perm   310 sec   (1868 perm/sec)   p_kst 4.024138e-03   p_cons 5.289655e-03   p_joint 3.810345e-04

Joint ci ratio: 2.672928e-01	ci left: 3.157474e-04	ci right 4.146906e-04	k: 214	n:590000
Cons ci ratio: 6.998212e-02	ci left: 5.104657e-03	ci right 5.476498e-03	k: 3120	n:590000
KS ci ratio: 8.032553e-02	ci left: 3.858805e-03	ci right 4.183383e-03	k: 2371	n:590000
SLIT1   590000 perm   318 sec   (1853 perm/sec)   p_kst 4.018644e-03   p_cons 5.288136e-03   p_joint 3.627119e-04

Joint ci ratio: 2.630443e-01	ci left: 3.213763e-04	ci right 4.202193e-04	k: 221	n:600000
Cons ci ratio: 6.939537e-02	ci left: 5.106373e-03	ci right 5.475095e-03	k: 3173	n:600000
KS ci ratio: 7.970649e-02	ci left: 3.854924e-03	ci right 4.176561e-03	k: 2408	n:600000
SLIT1   600000 perm   326 sec   (1839 perm/sec)   p_kst 4.013333e-03   p_cons 5.288333e-03   p_joint 3.683333e-04

Joint ci ratio: 2.601309e-01	ci left: 3.237672e-04	ci right 4.220633e-04	k: 226	n:610000
Cons ci ratio: 6.880170e-02	ci left: 5.111269e-03	ci right 5.477061e-03	k: 3228	n:610000
KS ci ratio: 7.897199e-02	ci left: 3.864036e-03	ci right 4.183326e-03	k: 2453	n:610000
SLIT1   610000 perm   335 sec   (1824 perm/sec)   p_kst 4.021311e-03   p_cons 5.291803e-03   p_joint 3.704918e-04

Joint ci ratio: 1.971736e-01	ci left: 5.742937e-04	ci right 7.014153e-04	k: 394	n:620000
Cons ci ratio: 6.810843e-02	ci left: 5.133460e-03	ci right 5.496992e-03	k: 3294	n:620000
KS ci ratio: 7.847845e-02	ci left: 3.850727e-03	ci right 4.166838e-03	k: 2484	n:620000
SLIT1   620000 perm   343 sec   (1810 perm/sec)   p_kst 4.006452e-03   p_cons 5.312903e-03   p_joint 6.354839e-04

Joint ci ratio: 1.976760e-01	ci left: 5.621599e-04	ci right 6.869509e-04	k: 392	n:630000
Cons ci ratio: 6.763833e-02	ci left: 5.123752e-03	ci right 5.483994e-03	k: 3340	n:630000
KS ci ratio: 7.783889e-02	ci left: 3.853412e-03	ci right 4.167049e-03	k: 2525	n:630000
SLIT1   630000 perm   351 sec   (1796 perm/sec)   p_kst 4.007937e-03   p_cons 5.301587e-03   p_joint 6.222222e-04

Joint ci ratio: 1.966780e-01	ci left: 5.593175e-04	ci right 6.827756e-04	k: 396	n:640000
Cons ci ratio: 6.718779e-02	ci left: 5.112820e-03	ci right 5.469806e-03	k: 3385	n:640000
KS ci ratio: 7.724493e-02	ci left: 3.852959e-03	ci right 4.164057e-03	k: 2564	n:640000
SLIT1   640000 perm   359 sec   (1783 perm/sec)   p_kst 4.006250e-03   p_cons 5.289063e-03   p_joint 6.187500e-04

Joint ci ratio: 1.949665e-01	ci left: 5.609539e-04	ci right 6.835678e-04	k: 403	n:650000
Cons ci ratio: 6.661938e-02	ci left: 5.121900e-03	ci right 5.476377e-03	k: 3443	n:650000
KS ci ratio: 7.657584e-02	ci left: 3.861582e-03	ci right 4.170556e-03	k: 2609	n:650000
SLIT1   650000 perm   367 sec   (1769 perm/sec)   p_kst 4.013846e-03   p_cons 5.296923e-03   p_joint 6.200000e-04

Joint ci ratio: 1.928301e-01	ci left: 5.654291e-04	ci right 6.875081e-04	k: 412	n:660000
Cons ci ratio: 6.611261e-02	ci left: 5.123266e-03	ci right 5.475037e-03	k: 3496	n:660000
KS ci ratio: 7.595257e-02	ci left: 3.866983e-03	ci right 4.173759e-03	k: 2652	n:660000
SLIT1   660000 perm   376 sec   (1756 perm/sec)   p_kst 4.018182e-03   p_cons 5.296970e-03   p_joint 6.242424e-04

Joint ci ratio: 1.907624e-01	ci left: 5.697779e-04	ci right 6.913237e-04	k: 421	n:670000
Cons ci ratio: 6.558011e-02	ci left: 5.130474e-03	ci right 5.479795e-03	k: 3553	n:670000
KS ci ratio: 7.528822e-02	ci left: 3.878090e-03	ci right 4.182939e-03	k: 2699	n:670000
SLIT1   670000 perm   385 sec   (1742 perm/sec)   p_kst 4.028358e-03   p_cons 5.302985e-03   p_joint 6.283582e-04

Joint ci ratio: 1.891995e-01	ci left: 5.712033e-04	ci right 6.919402e-04	k: 428	n:680000
Cons ci ratio: 6.513284e-02	ci left: 5.125906e-03	ci right 5.472446e-03	k: 3602	n:680000
KS ci ratio: 7.480523e-02	ci left: 3.871564e-03	ci right 4.173862e-03	k: 2734	n:680000
SLIT1   680000 perm   393 sec   (1730 perm/sec)   p_kst 4.020588e-03   p_cons 5.297059e-03   p_joint 6.294118e-04

Joint ci ratio: 2.026433e-01	ci left: 4.871180e-04	ci right 5.983044e-04	k: 373	n:690000
Cons ci ratio: 6.457915e-02	ci left: 5.140017e-03	ci right 5.484446e-03	k: 3664	n:690000
KS ci ratio: 7.433141e-02	ci left: 3.865232e-03	ci right 4.165042e-03	k: 2769	n:690000
SLIT1   690000 perm   402 sec   (1717 perm/sec)   p_kst 4.013043e-03   p_cons 5.310145e-03   p_joint 5.405797e-04

Joint ci ratio: 2.023736e-01	ci left: 4.815152e-04	ci right 5.912583e-04	k: 374	n:700000
Cons ci ratio: 6.407391e-02	ci left: 5.148113e-03	ci right 5.490286e-03	k: 3722	n:700000
KS ci ratio: 7.377412e-02	ci left: 3.868904e-03	ci right 4.166652e-03	k: 2811	n:700000
SLIT1   700000 perm   410 sec   (1705 perm/sec)   p_kst 4.015714e-03   p_cons 5.317143e-03   p_joint 5.342857e-04

Joint ci ratio: 1.534484e-01	ci left: 8.478398e-04	ci right 9.900857e-04	k: 651	n:710000
Cons ci ratio: 6.351284e-02	ci left: 5.167081e-03	ci right 5.507397e-03	k: 3788	n:710000
KS ci ratio: 7.310070e-02	ci left: 3.886308e-03	ci right 4.182550e-03	k: 2863	n:710000
SLIT1   710000 perm   419 sec   (1693 perm/sec)   p_kst 4.032394e-03   p_cons 5.335211e-03   p_joint 9.169014e-04

Joint ci ratio: 1.521700e-01	ci left: 8.507580e-04	ci right 9.921959e-04	k: 662	n:720000
Cons ci ratio: 6.304852e-02	ci left: 5.171864e-03	ci right 5.509913e-03	k: 3844	n:720000
KS ci ratio: 7.264578e-02	ci left: 3.881420e-03	ci right 4.175370e-03	k: 2899	n:720000
SLIT1   720000 perm   428 sec   (1681 perm/sec)   p_kst 4.026389e-03   p_cons 5.338889e-03   p_joint 9.194444e-04

Joint ci ratio: 1.509229e-01	ci left: 8.536009e-04	ci right 9.942435e-04	k: 673	n:730000
Cons ci ratio: 6.255394e-02	ci left: 5.183266e-03	ci right 5.519307e-03	k: 3905	n:730000
KS ci ratio: 7.203928e-02	ci left: 3.894160e-03	ci right 4.186510e-03	k: 2948	n:730000
SLIT1   730000 perm   437 sec   (1669 perm/sec)   p_kst 4.038356e-03   p_cons 5.349315e-03   p_joint 9.219178e-04

Joint ci ratio: 1.504776e-01	ci left: 8.472672e-04	ci right 9.864172e-04	k: 677	n:740000
Cons ci ratio: 6.219705e-02	ci left: 5.173084e-03	ci right 5.506482e-03	k: 3950	n:740000
KS ci ratio: 7.156767e-02	ci left: 3.893292e-03	ci right 4.183584e-03	k: 2987	n:740000
SLIT1   740000 perm   446 sec   (1658 perm/sec)   p_kst 4.036486e-03   p_cons 5.337838e-03   p_joint 9.148649e-04

Joint ci ratio: 1.508129e-01	ci left: 8.321205e-04	ci right 9.691149e-04	k: 674	n:750000
Cons ci ratio: 6.177629e-02	ci left: 5.174994e-03	ci right 5.506178e-03	k: 4004	n:750000
KS ci ratio: 7.111700e-02	ci left: 3.891145e-03	ci right 4.179374e-03	k: 3025	n:750000
SLIT1   750000 perm   456 sec   (1646 perm/sec)   p_kst 4.033333e-03   p_cons 5.338667e-03   p_joint 8.986667e-04

Joint ci ratio: 1.498174e-01	ci left: 8.325683e-04	ci right 9.686505e-04	k: 683	n:760000
Cons ci ratio: 6.131842e-02	ci left: 5.184635e-03	ci right 5.513890e-03	k: 4064	n:760000
KS ci ratio: 7.070950e-02	ci left: 3.885181e-03	ci right 4.171251e-03	k: 3060	n:760000
SLIT1   760000 perm   465 sec   (1634 perm/sec)   p_kst 4.026316e-03   p_cons 5.347368e-03   p_joint 8.986842e-04

Joint ci ratio: 1.486269e-01	ci left: 8.355082e-04	ci right 9.708893e-04	k: 694	n:770000
Cons ci ratio: 6.096724e-02	ci left: 5.177407e-03	ci right 5.504253e-03	k: 4111	n:770000
KS ci ratio: 7.020654e-02	ci left: 3.890860e-03	ci right 4.175228e-03	k: 3104	n:770000
SLIT1   770000 perm   475 sec   (1622 perm/sec)   p_kst 4.031169e-03   p_cons 5.338961e-03   p_joint 9.012987e-04

Joint ci ratio: 1.485208e-01	ci left: 8.260306e-04	ci right 9.597720e-04	k: 695	n:780000
Cons ci ratio: 6.049056e-02	ci left: 5.193099e-03	ci right 5.518283e-03	k: 4176	n:780000
KS ci ratio: 6.982557e-02	ci left: 3.883804e-03	ci right 4.166053e-03	k: 3138	n:780000
SLIT1   780000 perm   484 sec   (1611 perm/sec)   p_kst 4.023077e-03   p_cons 5.353846e-03   p_joint 8.910256e-04

Joint ci ratio: 1.478850e-01	ci left: 8.228877e-04	ci right 9.554995e-04	k: 701	n:790000
Cons ci ratio: 6.019633e-02	ci left: 5.178478e-03	ci right 5.501115e-03	k: 4217	n:790000
KS ci ratio: 6.941779e-02	ci left: 3.880661e-03	ci right 4.160969e-03	k: 3175	n:790000
SLIT1   790000 perm   494 sec   (1600 perm/sec)   p_kst 4.018987e-03   p_cons 5.337975e-03   p_joint 8.873418e-04

Joint ci ratio: 1.473615e-01	ci left: 8.186206e-04	ci right 9.500366e-04	k: 706	n:800000
Cons ci ratio: 5.986397e-02	ci left: 5.171615e-03	ci right 5.491983e-03	k: 4264	n:800000
KS ci ratio: 6.906025e-02	ci left: 3.872688e-03	ci right 4.150922e-03	k: 3208	n:800000
SLIT1   800000 perm   503 sec   (1589 perm/sec)   p_kst 4.010000e-03   p_cons 5.330000e-03   p_joint 8.825000e-04

Joint ci ratio: 1.485233e-01	ci left: 7.954359e-04	ci right 9.242261e-04	k: 695	n:810000
Cons ci ratio: 5.947469e-02	ci left: 5.175872e-03	ci right 5.494348e-03	k: 4320	n:810000
KS ci ratio: 6.853858e-02	ci left: 3.884331e-03	ci right 4.161209e-03	k: 3257	n:810000
SLIT1   810000 perm   513 sec   (1579 perm/sec)   p_kst 4.020988e-03   p_cons 5.333333e-03   p_joint 8.580247e-04

Joint ci ratio: 1.479930e-01	ci left: 7.916068e-04	ci right 9.192788e-04	k: 700	n:820000
Cons ci ratio: 5.905900e-02	ci left: 5.186040e-03	ci right 5.502835e-03	k: 4381	n:820000
KS ci ratio: 6.816320e-02	ci left: 3.880113e-03	ci right 4.155116e-03	k: 3293	n:820000
SLIT1   820000 perm   523 sec   (1569 perm/sec)   p_kst 4.015854e-03   p_cons 5.342683e-03   p_joint 8.536585e-04

Joint ci ratio: 1.471557e-01	ci left: 7.913520e-04	ci right 9.181974e-04	k: 708	n:830000
Cons ci ratio: 5.871838e-02	ci left: 5.184099e-03	ci right 5.498887e-03	k: 4432	n:830000
KS ci ratio: 6.777349e-02	ci left: 3.878370e-03	ci right 4.151616e-03	k: 3331	n:830000
SLIT1   830000 perm   533 sec   (1558 perm/sec)   p_kst 4.013253e-03   p_cons 5.339759e-03   p_joint 8.530120e-04

Joint ci ratio: 1.464347e-01	ci left: 7.899583e-04	ci right 9.159057e-04	k: 715	n:840000
Cons ci ratio: 5.829217e-02	ci left: 5.198634e-03	ci right 5.511935e-03	k: 4497	n:840000
KS ci ratio: 6.741047e-02	ci left: 3.874331e-03	ci right 4.145773e-03	k: 3367	n:840000
SLIT1   840000 perm   542 sec   (1548 perm/sec)   p_kst 4.008333e-03   p_cons 5.353571e-03   p_joint 8.511905e-04

Joint ci ratio: 1.458252e-01	ci left: 7.874654e-04	ci right 9.124472e-04	k: 721	n:850000
Cons ci ratio: 5.796457e-02	ci left: 5.196601e-03	ci right 5.507961e-03	k: 4548	n:850000
KS ci ratio: 6.696440e-02	ci left: 3.880803e-03	ci right 4.150830e-03	k: 3412	n:850000
SLIT1   850000 perm   553 sec   (1538 perm/sec)   p_kst 4.014118e-03   p_cons 5.350588e-03   p_joint 8.482353e-04

Joint ci ratio: 1.456242e-01	ci left: 7.805494e-04	ci right 9.042479e-04	k: 723	n:860000
Cons ci ratio: 5.758582e-02	ci left: 5.204936e-03	ci right 5.514690e-03	k: 4608	n:860000
KS ci ratio: 6.657542e-02	ci left: 3.881413e-03	ci right 4.149852e-03	k: 3452	n:860000
SLIT1   860000 perm   563 sec   (1528 perm/sec)   p_kst 4.013953e-03   p_cons 5.358140e-03   p_joint 8.406977e-04

Joint ci ratio: 1.449254e-01	ci left: 7.793310e-04	ci right 9.021925e-04	k: 730	n:870000
Cons ci ratio: 5.717748e-02	ci left: 5.219883e-03	ci right 5.528252e-03	k: 4674	n:870000
KS ci ratio: 6.621217e-02	ci left: 3.879752e-03	ci right 4.146556e-03	k: 3490	n:870000
SLIT1   870000 perm   573 sec   (1519 perm/sec)   p_kst 4.011494e-03   p_cons 5.372414e-03   p_joint 8.390805e-04

Joint ci ratio: 1.443345e-01	ci left: 7.770464e-04	ci right 8.990052e-04	k: 736	n:880000
Cons ci ratio: 5.685008e-02	ci left: 5.221055e-03	ci right 5.527669e-03	k: 4728	n:880000
KS ci ratio: 6.580801e-02	ci left: 3.883721e-03	ci right 4.149106e-03	k: 3533	n:880000
SLIT1   880000 perm   583 sec   (1508 perm/sec)   p_kst 4.014773e-03   p_cons 5.372727e-03   p_joint 8.363636e-04

Joint ci ratio: 1.449268e-01	ci left: 7.618175e-04	ci right 8.819191e-04	k: 730	n:890000
Cons ci ratio: 5.652231e-02	ci left: 5.223314e-03	ci right 5.528234e-03	k: 4783	n:890000
KS ci ratio: 6.536531e-02	ci left: 3.893132e-03	ci right 4.157303e-03	k: 3581	n:890000
SLIT1   890000 perm   594 sec   (1498 perm/sec)   p_kst 4.023596e-03   p_cons 5.374157e-03   p_joint 8.202247e-04

Joint ci ratio: 1.448284e-01	ci left: 7.544235e-04	ci right 8.732717e-04	k: 731	n:900000
Cons ci ratio: 5.619429e-02	ci left: 5.226623e-03	ci right 5.529907e-03	k: 4839	n:900000
KS ci ratio: 6.504848e-02	ci left: 3.888130e-03	ci right 4.150634e-03	k: 3616	n:900000
SLIT1   900000 perm   605 sec   (1487 perm/sec)   p_kst 4.017778e-03   p_cons 5.376667e-03   p_joint 8.122222e-04

Joint ci ratio: 1.451269e-01	ci left: 7.429556e-04	ci right 8.602595e-04	k: 728	n:910000
Cons ci ratio: 5.598125e-02	ci left: 5.209275e-03	ci right 5.510370e-03	k: 4876	n:910000
KS ci ratio: 6.470953e-02	ci left: 3.886484e-03	ci right 4.147458e-03	k: 3654	n:910000
SLIT1   910000 perm   616 sec   (1477 perm/sec)   p_kst 4.015385e-03   p_cons 5.358242e-03   p_joint 8.000000e-04

Joint ci ratio: 1.474744e-01	ci left: 7.107942e-04	ci right 8.249955e-04	k: 705	n:920000
Cons ci ratio: 5.569658e-02	ci left: 5.206241e-03	ci right 5.505582e-03	k: 4926	n:920000
KS ci ratio: 6.435832e-02	ci left: 3.887016e-03	ci right 4.146557e-03	k: 3694	n:920000
SLIT1   920000 perm   627 sec   (1468 perm/sec)   p_kst 4.015217e-03   p_cons 5.354348e-03   p_joint 7.663043e-04

Joint ci ratio: 1.466459e-01	ci left: 7.114369e-04	ci right 8.250430e-04	k: 713	n:930000
Cons ci ratio: 5.537707e-02	ci left: 5.210700e-03	ci right 5.508523e-03	k: 4983	n:930000
KS ci ratio: 6.402139e-02	ci left: 3.886482e-03	ci right 4.144579e-03	k: 3733	n:930000
SLIT1   930000 perm   638 sec   (1458 perm/sec)   p_kst 4.013978e-03   p_cons 5.358065e-03   p_joint 7.666667e-04

Joint ci ratio: 1.455289e-01	ci left: 7.151429e-04	ci right 8.283954e-04	k: 724	n:940000
Cons ci ratio: 5.508497e-02	ci left: 5.210871e-03	ci right 5.507083e-03	k: 5036	n:940000
KS ci ratio: 6.365581e-02	ci left: 3.890152e-03	ci right 4.146962e-03	k: 3776	n:940000
SLIT1   940000 perm   649 sec   (1448 perm/sec)   p_kst 4.017021e-03   p_cons 5.357447e-03   p_joint 7.702128e-04

Joint ci ratio: 1.447326e-01	ci left: 7.157304e-04	ci right 8.284020e-04	k: 732	n:950000
Cons ci ratio: 5.486794e-02	ci left: 5.197545e-03	ci right 5.491799e-03	k: 5076	n:950000
KS ci ratio: 6.327980e-02	ci left: 3.895820e-03	ci right 4.151430e-03	k: 3821	n:950000
SLIT1   950000 perm   660 sec   (1439 perm/sec)   p_kst 4.022105e-03   p_cons 5.343158e-03   p_joint 7.705263e-04

Joint ci ratio: 1.439491e-01	ci left: 7.163073e-04	ci right 8.284069e-04	k: 740	n:960000
Cons ci ratio: 5.457309e-02	ci left: 5.199912e-03	ci right 5.492668e-03	k: 5131	n:960000
KS ci ratio: 6.294307e-02	ci left: 3.897273e-03	ci right 4.151568e-03	k: 3862	n:960000
SLIT1   960000 perm   671 sec   (1430 perm/sec)   p_kst 4.022917e-03   p_cons 5.344792e-03   p_joint 7.708333e-04

Joint ci ratio: 1.464431e-01	ci left: 6.840849e-04	ci right 7.931589e-04	k: 715	n:970000
Cons ci ratio: 5.429874e-02	ci left: 5.199183e-03	ci right 5.490380e-03	k: 5183	n:970000
KS ci ratio: 6.273278e-02	ci left: 3.883477e-03	ci right 4.135994e-03	k: 3888	n:970000
SLIT1   970000 perm   683 sec   (1421 perm/sec)   p_kst 4.008247e-03   p_cons 5.343299e-03   p_joint 7.371134e-04

Joint ci ratio: 1.460360e-01	ci left: 6.810366e-04	ci right 7.892964e-04	k: 719	n:980000
Cons ci ratio: 5.404924e-02	ci left: 5.194446e-03	ci right 5.483999e-03	k: 5231	n:980000
KS ci ratio: 6.238872e-02	ci left: 3.887041e-03	ci right 4.138354e-03	k: 3931	n:980000
SLIT1   980000 perm   694 sec   (1412 perm/sec)   p_kst 4.011224e-03   p_cons 5.337755e-03   p_joint 7.336735e-04

Joint ci ratio: 1.454314e-01	ci left: 6.799971e-04	ci right 7.876052e-04	k: 725	n:990000
Cons ci ratio: 5.378779e-02	ci left: 5.192798e-03	ci right 5.480815e-03	k: 5282	n:990000
KS ci ratio: 6.209734e-02	ci left: 3.884570e-03	ci right 4.134508e-03	k: 3968	n:990000
SLIT1   990000 perm   705 sec   (1404 perm/sec)   p_kst 4.008081e-03   p_cons 5.335354e-03   p_joint 7.323232e-04

Joint ci ratio: 1.453318e-01	ci left: 6.741606e-04	ci right 7.807657e-04	k: 726	n:1000000
Cons ci ratio: 5.364142e-02	ci left: 5.169479e-03	ci right 5.455398e-03	k: 5311	n:1000000
KS ci ratio: 6.177904e-02	ci left: 3.886089e-03	ci right 4.134797e-03	k: 4009	n:1000000
SLIT1   1000000 perm   717 sec   (1395 perm/sec)   p_kst 4.009000e-03   p_cons 5.311000e-03   p_joint 7.260000e-04

Joint ci ratio: 1.458351e-01	ci left: 6.627152e-04	ci right 7.679050e-04	k: 721	n:1010000
Cons ci ratio: 5.336581e-02	ci left: 5.172023e-03	ci right 5.456568e-03	k: 5366	n:1010000
KS ci ratio: 6.144275e-02	ci left: 3.890506e-03	ci right 4.138094e-03	k: 4053	n:1010000
SLIT1   1010000 perm   730 sec   (1384 perm/sec)   p_kst 4.012871e-03   p_cons 5.312871e-03   p_joint 7.138614e-04

Joint ci ratio: 1.451332e-01	ci left: 6.628310e-04	ci right 7.674889e-04	k: 728	n:1020000
Cons ci ratio: 5.310425e-02	ci left: 5.172586e-03	ci right 5.455725e-03	k: 5419	n:1020000
KS ci ratio: 6.112687e-02	ci left: 3.892910e-03	ci right 4.139332e-03	k: 4095	n:1020000
SLIT1   1020000 perm   742 sec   (1374 perm/sec)   p_kst 4.014706e-03   p_cons 5.312745e-03   p_joint 7.137255e-04

Joint ci ratio: 1.443433e-01	ci left: 6.638815e-04	ci right 7.680856e-04	k: 736	n:1030000
Cons ci ratio: 5.286107e-02	ci left: 5.170267e-03	ci right 5.451943e-03	k: 5469	n:1030000
KS ci ratio: 6.082319e-02	ci left: 3.894314e-03	ci right 4.139556e-03	k: 4136	n:1030000
SLIT1   1030000 perm   754 sec   (1365 perm/sec)   p_kst 4.015534e-03   p_cons 5.309709e-03   p_joint 7.145631e-04

Joint ci ratio: 1.436627e-01	ci left: 6.639863e-04	ci right 7.676732e-04	k: 743	n:1040000
Cons ci ratio: 5.256856e-02	ci left: 5.178434e-03	ci right 5.458947e-03	k: 5530	n:1040000
KS ci ratio: 6.053126e-02	ci left: 3.894746e-03	ci right 4.138798e-03	k: 4176	n:1040000
SLIT1   1040000 perm   767 sec   (1356 perm/sec)   p_kst 4.015385e-03   p_cons 5.317308e-03   p_joint 7.144231e-04

Joint ci ratio: 1.429916e-01	ci left: 6.640902e-04	ci right 7.672676e-04	k: 750	n:1050000
Cons ci ratio: 5.225738e-02	ci left: 5.191150e-03	ci right 5.470637e-03	k: 5596	n:1050000
KS ci ratio: 6.027221e-02	ci left: 3.891421e-03	ci right 4.134185e-03	k: 4212	n:1050000
SLIT1   1050000 perm   779 sec   (1347 perm/sec)   p_kst 4.011429e-03   p_cons 5.329524e-03   p_joint 7.142857e-04

Joint ci ratio: 1.422360e-01	ci left: 6.651031e-04	ci right 7.678455e-04	k: 758	n:1060000
Cons ci ratio: 5.203486e-02	ci left: 5.186869e-03	ci right 5.464901e-03	k: 5644	n:1060000
KS ci ratio: 6.000936e-02	ci left: 3.889090e-03	ci right 4.130614e-03	k: 4249	n:1060000
SLIT1   1060000 perm   791 sec   (1339 perm/sec)   p_kst 4.008491e-03   p_cons 5.324528e-03   p_joint 7.150943e-04

Joint ci ratio: 1.438578e-01	ci left: 6.435674e-04	ci right 7.442140e-04	k: 741	n:1070000
Cons ci ratio: 5.179230e-02	ci left: 5.187284e-03	ci right 5.464003e-03	k: 5697	n:1070000
KS ci ratio: 5.974293e-02	ci left: 3.887726e-03	ci right 4.128055e-03	k: 4287	n:1070000
SLIT1   1070000 perm   804 sec   (1332 perm/sec)   p_kst 4.006542e-03   p_cons 5.324299e-03   p_joint 6.925234e-04

Joint ci ratio: 1.433756e-01	ci left: 6.420717e-04	ci right 7.421190e-04	k: 746	n:1080000
Cons ci ratio: 5.153509e-02	ci left: 5.191349e-03	ci right 5.466869e-03	k: 5754	n:1080000
KS ci ratio: 5.944553e-02	ci left: 3.890950e-03	ci right 4.130241e-03	k: 4330	n:1080000
SLIT1   1080000 perm   817 sec   (1321 perm/sec)   p_kst 4.009259e-03   p_cons 5.327778e-03   p_joint 6.907407e-04

Joint ci ratio: 1.425195e-01	ci left: 6.441427e-04	ci right 7.438625e-04	k: 755	n:1090000
Cons ci ratio: 5.129498e-02	ci left: 5.192627e-03	ci right 5.466893e-03	k: 5808	n:1090000
KS ci ratio: 5.919331e-02	ci left: 3.888695e-03	ci right 4.126797e-03	k: 4367	n:1090000
SLIT1   1090000 perm   831 sec   (1312 perm/sec)   p_kst 4.006422e-03   p_cons 5.328440e-03   p_joint 6.926606e-04

Joint ci ratio: 1.419574e-01	ci left: 6.435473e-04	ci right 7.427487e-04	k: 761	n:1100000
Cons ci ratio: 5.107571e-02	ci left: 5.190294e-03	ci right 5.463230e-03	k: 5858	n:1100000
KS ci ratio: 5.891742e-02	ci left: 3.890065e-03	ci right 4.127104e-03	k: 4408	n:1100000
SLIT1   1100000 perm   843 sec   (1305 perm/sec)   p_kst 4.007273e-03   p_cons 5.325455e-03   p_joint 6.918182e-04

Joint ci ratio: 1.412179e-01	ci left: 6.447015e-04	ci right 7.435196e-04	k: 769	n:1110000
Cons ci ratio: 5.084626e-02	ci left: 5.190674e-03	ci right 5.462368e-03	k: 5911	n:1110000
KS ci ratio: 5.865197e-02	ci left: 3.890526e-03	ci right 4.126488e-03	k: 4448	n:1110000
SLIT1   1110000 perm   856 sec   (1297 perm/sec)   p_kst 4.007207e-03   p_cons 5.325225e-03   p_joint 6.927928e-04

Joint ci ratio: 1.429948e-01	ci left: 6.225836e-04	ci right 7.193146e-04	k: 750	n:1120000
Cons ci ratio: 5.065403e-02	ci left: 5.183997e-03	ci right 5.454285e-03	k: 5956	n:1120000
KS ci ratio: 5.841621e-02	ci left: 3.887461e-03	ci right 4.122258e-03	k: 4484	n:1120000
SLIT1   1120000 perm   869 sec   (1289 perm/sec)   p_kst 4.003571e-03   p_cons 5.317857e-03   p_joint 6.696429e-04

Joint ci ratio: 1.418655e-01	ci left: 6.273152e-04	ci right 7.239465e-04	k: 762	n:1130000
Cons ci ratio: 5.043863e-02	ci left: 5.182683e-03	ci right 5.451721e-03	k: 6007	n:1130000
KS ci ratio: 5.819619e-02	ci left: 3.882709e-03	ci right 4.116305e-03	k: 4518	n:1130000
SLIT1   1130000 perm   882 sec   (1282 perm/sec)   p_kst 3.998230e-03   p_cons 5.315929e-03   p_joint 6.743363e-04

Joint ci ratio: 1.262668e-01	ci left: 7.913907e-04	ci right 8.988907e-04	k: 962	n:1140000
Cons ci ratio: 5.018434e-02	ci left: 5.190057e-03	ci right 5.458080e-03	k: 6068	n:1140000
KS ci ratio: 5.785756e-02	ci left: 3.894467e-03	ci right 4.127362e-03	k: 4571	n:1140000
SLIT1   1140000 perm   897 sec   (1271 perm/sec)   p_kst 4.009649e-03   p_cons 5.322807e-03   p_joint 8.438596e-04

Joint ci ratio: 1.306882e-01	ci left: 7.306435e-04	ci right 8.336368e-04	k: 898	n:1150000
Cons ci ratio: 5.002418e-02	ci left: 5.178413e-03	ci right 5.444957e-03	k: 6107	n:1150000
KS ci ratio: 5.762494e-02	ci left: 3.892312e-03	ci right 4.124111e-03	k: 4608	n:1150000
SLIT1   1150000 perm   910 sec   (1263 perm/sec)   p_kst 4.006957e-03   p_cons 5.310435e-03   p_joint 7.808696e-04

Joint ci ratio: 1.301105e-01	ci left: 7.310164e-04	ci right 8.335716e-04	k: 906	n:1160000
Cons ci ratio: 4.981261e-02	ci left: 5.178040e-03	ci right 5.443405e-03	k: 6159	n:1160000
KS ci ratio: 5.737650e-02	ci left: 3.892744e-03	ci right 4.123536e-03	k: 4648	n:1160000
SLIT1   1160000 perm   924 sec   (1256 perm/sec)   p_kst 4.006897e-03   p_cons 5.309483e-03   p_joint 7.810345e-04

Joint ci ratio: 1.295405e-01	ci left: 7.313840e-04	ci right 8.335066e-04	k: 914	n:1170000
Cons ci ratio: 4.959568e-02	ci left: 5.179364e-03	ci right 5.443607e-03	k: 6213	n:1170000
KS ci ratio: 5.707019e-02	ci left: 3.901597e-03	ci right 4.131638e-03	k: 4698	n:1170000
SLIT1   1170000 perm   937 sec   (1249 perm/sec)   p_kst 4.015385e-03   p_cons 5.310256e-03   p_joint 7.811966e-04

Joint ci ratio: 1.427123e-01	ci left: 5.933777e-04	ci right 6.853733e-04	k: 753	n:1180000
Cons ci ratio: 5.116403e-02	ci left: 4.823327e-03	ci right 5.077417e-03	k: 5840	n:1180000
KS ci ratio: 5.682883e-02	ci left: 3.901948e-03	ci right 4.131005e-03	k: 4738	n:1180000
SLIT1   1180000 perm   951 sec   (1240 perm/sec)   p_kst 4.015254e-03   p_cons 4.949153e-03   p_joint 6.381356e-04

Joint ci ratio: 1.423354e-01	ci left: 5.916327e-04	ci right 6.830950e-04	k: 757	n:1190000
Cons ci ratio: 5.095077e-02	ci left: 4.823446e-03	ci right 5.076452e-03	k: 5889	n:1190000
KS ci ratio: 5.656674e-02	ci left: 3.905610e-03	ci right 4.133790e-03	k: 4782	n:1190000
SLIT1   1190000 perm   965 sec   (1233 perm/sec)   p_kst 4.018487e-03   p_cons 4.948739e-03   p_joint 6.361345e-04

Joint ci ratio: 1.425240e-01	ci left: 5.850950e-04	ci right 6.756767e-04	k: 755	n:1200000
Cons ci ratio: 5.072729e-02	ci left: 4.826033e-03	ci right 5.078032e-03	k: 5941	n:1200000
KS ci ratio: 5.631996e-02	ci left: 3.907569e-03	ci right 4.134835e-03	k: 4824	n:1200000
SLIT1   1200000 perm   979 sec   (1226 perm/sec)   p_kst 4.020000e-03   p_cons 4.950833e-03   p_joint 6.291667e-04

Joint ci ratio: 1.419618e-01	ci left: 5.850418e-04	ci right 6.752276e-04	k: 761	n:1210000
Cons ci ratio: 5.052790e-02	ci left: 4.824500e-03	ci right 5.075400e-03	k: 5988	n:1210000
KS ci ratio: 5.605326e-02	ci left: 3.912758e-03	ci right 4.139213e-03	k: 4870	n:1210000
SLIT1   1210000 perm   992 sec   (1220 perm/sec)   p_kst 4.024793e-03   p_cons 4.948760e-03   p_joint 6.289256e-04

Joint ci ratio: 1.282172e-01	ci left: 7.164805e-04	ci right 8.154225e-04	k: 933	n:1220000
Cons ci ratio: 5.035181e-02	ci left: 4.818946e-03	ci right 5.068659e-03	k: 6030	n:1220000
KS ci ratio: 5.586452e-02	ci left: 3.907356e-03	ci right 4.132713e-03	k: 4903	n:1220000
SLIT1   1220000 perm   1005 sec   (1214 perm/sec)   p_kst 4.018852e-03   p_cons 4.942623e-03   p_joint 7.647541e-04

Joint ci ratio: 1.276038e-01	ci left: 7.177385e-04	ci right 8.163441e-04	k: 942	n:1230000
Cons ci ratio: 5.016510e-02	ci left: 4.815893e-03	ci right 5.064495e-03	k: 6075	n:1230000
KS ci ratio: 5.564937e-02	ci left: 3.906053e-03	ci right 4.130439e-03	k: 4941	n:1230000
SLIT1   1230000 perm   1019 sec   (1207 perm/sec)   p_kst 4.017073e-03   p_cons 4.939024e-03   p_joint 7.658537e-04

Joint ci ratio: 1.282180e-01	ci left: 7.049241e-04	ci right 8.022709e-04	k: 933	n:1240000
Cons ci ratio: 4.997635e-02	ci left: 4.813688e-03	ci right 5.061214e-03	k: 6121	n:1240000
KS ci ratio: 5.548146e-02	ci left: 3.898409e-03	ci right 4.121659e-03	k: 4971	n:1240000
SLIT1   1240000 perm   1032 sec   (1201 perm/sec)   p_kst 4.008871e-03   p_cons 4.936290e-03   p_joint 7.524194e-04

Joint ci ratio: 1.278082e-01	ci left: 7.039310e-04	ci right 8.008064e-04	k: 939	n:1250000
Cons ci ratio: 4.970474e-02	ci left: 4.828111e-03	ci right 5.074991e-03	k: 6188	n:1250000
KS ci ratio: 5.523197e-02	ci left: 3.902724e-03	ci right 4.125184e-03	k: 5016	n:1250000
SLIT1   1250000 perm   1046 sec   (1195 perm/sec)   p_kst 4.012800e-03   p_cons 4.950400e-03   p_joint 7.512000e-04

Joint ci ratio: 1.272677e-01	ci left: 7.044909e-04	ci right 8.010024e-04	k: 947	n:1260000
Cons ci ratio: 4.949719e-02	ci left: 4.830551e-03	ci right 5.076495e-03	k: 6240	n:1260000
KS ci ratio: 5.505685e-02	ci left: 3.896796e-03	ci right 4.118192e-03	k: 5048	n:1260000
SLIT1   1260000 perm   1060 sec   (1189 perm/sec)   p_kst 4.006349e-03   p_cons 4.952381e-03   p_joint 7.515873e-04

Joint ci ratio: 1.270671e-01	ci left: 7.012307e-04	ci right 7.971327e-04	k: 950	n:1270000
Cons ci ratio: 4.933557e-02	ci left: 4.824399e-03	ci right 5.069205e-03	k: 6281	n:1270000
KS ci ratio: 5.486711e-02	ci left: 3.893293e-03	ci right 4.113703e-03	k: 5083	n:1270000
SLIT1   1270000 perm   1074 sec   (1182 perm/sec)   p_kst 4.002362e-03   p_cons 4.945669e-03   p_joint 7.480315e-04

Joint ci ratio: 1.265359e-01	ci left: 7.018041e-04	ci right 7.973533e-04	k: 958	n:1280000
Cons ci ratio: 4.908977e-02	ci left: 4.835323e-03	ci right 5.079426e-03	k: 6344	n:1280000
KS ci ratio: 5.470616e-02	ci left: 3.885993e-03	ci right 4.105324e-03	k: 5113	n:1280000
SLIT1   1280000 perm   1089 sec   (1175 perm/sec)   p_kst 3.994531e-03   p_cons 4.956250e-03   p_joint 7.484375e-04

Joint ci ratio: 1.297582e-01	ci left: 6.610965e-04	ci right 7.535721e-04	k: 911	n:1290000
Cons ci ratio: 4.887061e-02	ci left: 4.841485e-03	ci right 5.084777e-03	k: 6401	n:1290000
KS ci ratio: 5.449877e-02	ci left: 3.885688e-03	ci right 4.104145e-03	k: 5152	n:1290000
SLIT1   1290000 perm   1105 sec   (1167 perm/sec)   p_kst 3.993798e-03   p_cons 4.962016e-03   p_joint 7.062016e-04

Joint ci ratio: 1.297586e-01	ci left: 6.560111e-04	ci right 7.477755e-04	k: 911	n:1300000
Cons ci ratio: 4.862788e-02	ci left: 4.852874e-03	ci right 5.095493e-03	k: 6465	n:1300000
KS ci ratio: 5.428847e-02	ci left: 3.886149e-03	ci right 4.103762e-03	k: 5192	n:1300000
SLIT1   1300000 perm   1120 sec   (1161 perm/sec)   p_kst 3.993846e-03   p_cons 4.973077e-03   p_joint 7.007692e-04

Joint ci ratio: 1.291931e-01	ci left: 6.569124e-04	ci right 7.483718e-04	k: 919	n:1310000
Cons ci ratio: 4.841854e-02	ci left: 4.858059e-03	ci right 5.099863e-03	k: 6521	n:1310000
KS ci ratio: 5.402361e-02	ci left: 3.894889e-03	ci right 4.111893e-03	k: 5243	n:1310000
SLIT1   1310000 perm   1134 sec   (1155 perm/sec)   p_kst 4.002290e-03   p_cons 4.977863e-03   p_joint 7.015267e-04

Joint ci ratio: 1.286350e-01	ci left: 6.578010e-04	ci right 7.489583e-04	k: 927	n:1320000
Cons ci ratio: 4.820821e-02	ci left: 4.863916e-03	ci right 5.104931e-03	k: 6578	n:1320000
KS ci ratio: 5.386994e-02	ci left: 3.887802e-03	ci right 4.103777e-03	k: 5273	n:1320000
SLIT1   1320000 perm   1149 sec   (1149 perm/sec)   p_kst 3.994697e-03   p_cons 4.983333e-03   p_joint 7.022727e-04

Joint ci ratio: 1.281526e-01	ci left: 6.579492e-04	ci right 7.487591e-04	k: 934	n:1330000
Cons ci ratio: 4.800422e-02	ci left: 4.868944e-03	ci right 5.109159e-03	k: 6634	n:1330000
KS ci ratio: 5.368203e-02	ci left: 3.886016e-03	ci right 4.101115e-03	k: 5310	n:1330000
SLIT1   1330000 perm   1163 sec   (1143 perm/sec)   p_kst 3.992481e-03   p_cons 4.987970e-03   p_joint 7.022556e-04

Joint ci ratio: 1.274726e-01	ci left: 6.602633e-04	ci right 7.508725e-04	k: 944	n:1340000
Cons ci ratio: 4.777053e-02	ci left: 4.880536e-03	ci right 5.120119e-03	k: 6699	n:1340000
KS ci ratio: 5.347097e-02	ci left: 3.887939e-03	ci right 4.102273e-03	k: 5352	n:1340000
SLIT1   1340000 perm   1178 sec   (1138 perm/sec)   p_kst 3.994030e-03   p_cons 4.999254e-03   p_joint 7.044776e-04

Joint ci ratio: 1.267369e-01	ci left: 6.632616e-04	ci right 7.537175e-04	k: 955	n:1350000
Cons ci ratio: 4.758619e-02	ci left: 4.882443e-03	ci right 5.121169e-03	k: 6751	n:1350000
KS ci ratio: 5.331202e-02	ci left: 3.882527e-03	ci right 4.095906e-03	k: 5384	n:1350000
SLIT1   1350000 perm   1192 sec   (1132 perm/sec)   p_kst 3.988148e-03   p_cons 5.000741e-03   p_joint 7.074074e-04

Joint ci ratio: 1.263411e-01	ci left: 6.626568e-04	ci right 7.527268e-04	k: 961	n:1360000
Cons ci ratio: 4.744252e-02	ci left: 4.876332e-03	ci right 5.114019e-03	k: 6792	n:1360000
KS ci ratio: 5.307584e-02	ci left: 3.888804e-03	ci right 4.101552e-03	k: 5432	n:1360000
SLIT1   1360000 perm   1207 sec   (1127 perm/sec)   p_kst 3.994118e-03   p_cons 4.994118e-03   p_joint 7.066176e-04

Joint ci ratio: 1.276765e-01	ci left: 6.436847e-04	ci right 7.321708e-04	k: 941	n:1370000
Cons ci ratio: 4.730363e-02	ci left: 4.869589e-03	ci right 5.106234e-03	k: 6832	n:1370000
KS ci ratio: 5.285729e-02	ci left: 3.892830e-03	ci right 4.104895e-03	k: 5477	n:1370000
SLIT1   1370000 perm   1222 sec   (1121 perm/sec)   p_kst 3.997810e-03   p_cons 4.986861e-03   p_joint 6.868613e-04

Joint ci ratio: 1.270709e-01	ci left: 6.453343e-04	ci right 7.335946e-04	k: 950	n:1380000
Cons ci ratio: 4.711087e-02	ci left: 4.874403e-03	ci right 5.110291e-03	k: 6888	n:1380000
KS ci ratio: 5.265578e-02	ci left: 3.894655e-03	ci right 4.105986e-03	k: 5519	n:1380000
SLIT1   1380000 perm   1237 sec   (1115 perm/sec)   p_kst 3.999275e-03   p_cons 4.991304e-03   p_joint 6.884058e-04

Joint ci ratio: 1.266058e-01	ci left: 6.455678e-04	ci right 7.335126e-04	k: 957	n:1390000
Cons ci ratio: 4.690009e-02	ci left: 4.883416e-03	ci right 5.118654e-03	k: 6950	n:1390000
KS ci ratio: 5.244236e-02	ci left: 3.898585e-03	ci right 4.109246e-03	k: 5564	n:1390000
SLIT1   1390000 perm   1252 sec   (1110 perm/sec)   p_kst 4.002878e-03   p_cons 5.000000e-03   p_joint 6.884892e-04

Joint ci ratio: 1.260804e-01	ci left: 6.464903e-04	ci right 7.341680e-04	k: 965	n:1400000
Cons ci ratio: 4.673902e-02	ci left: 4.882419e-03	ci right 5.116779e-03	k: 6998	n:1400000
KS ci ratio: 5.226894e-02	ci left: 3.896820e-03	ci right 4.106668e-03	k: 5601	n:1400000
SLIT1   1400000 perm   1267 sec   (1105 perm/sec)   p_kst 4.000714e-03   p_cons 4.998571e-03   p_joint 6.892857e-04

Joint ci ratio: 1.262770e-01	ci left: 6.398447e-04	ci right 7.267665e-04	k: 962	n:1410000
Cons ci ratio: 4.659289e-02	ci left: 4.878633e-03	ci right 5.112060e-03	k: 7042	n:1410000
KS ci ratio: 5.214833e-02	ci left: 3.887382e-03	ci right 4.096224e-03	k: 5627	n:1410000
SLIT1   1410000 perm   1283 sec   (1099 perm/sec)   p_kst 3.990780e-03   p_cons 4.994326e-03   p_joint 6.822695e-04

Joint ci ratio: 1.256263e-01	ci left: 6.421591e-04	ci right 7.289124e-04	k: 972	n:1420000
Cons ci ratio: 4.641194e-02	ci left: 4.882559e-03	ci right 5.115242e-03	k: 7097	n:1420000
KS ci ratio: 5.195939e-02	ci left: 3.888503e-03	ci right 4.096626e-03	k: 5668	n:1420000
SLIT1   1420000 perm   1298 sec   (1094 perm/sec)   p_kst 3.991549e-03   p_cons 4.997887e-03   p_joint 6.845070e-04

Joint ci ratio: 1.331666e-01	ci left: 5.652618e-04	ci right 6.465731e-04	k: 865	n:1430000
Cons ci ratio: 4.624608e-02	ci left: 4.883666e-03	ci right 5.115548e-03	k: 7148	n:1430000
KS ci ratio: 5.174520e-02	ci left: 3.893752e-03	ci right 4.101272e-03	k: 5715	n:1430000
SLIT1   1430000 perm   1313 sec   (1089 perm/sec)   p_kst 3.996503e-03   p_cons 4.998601e-03   p_joint 6.048951e-04

Joint ci ratio: 1.332439e-01	ci left: 5.606650e-04	ci right 6.413655e-04	k: 864	n:1440000
Cons ci ratio: 4.605949e-02	ci left: 4.889565e-03	ci right 5.120766e-03	k: 7206	n:1440000
KS ci ratio: 5.158309e-02	ci left: 3.891389e-03	ci right 4.098114e-03	k: 5751	n:1440000
SLIT1   1440000 perm   1328 sec   (1084 perm/sec)   p_kst 3.993750e-03   p_cons 5.004167e-03   p_joint 6.000000e-04

Joint ci ratio: 1.328605e-01	ci left: 5.601318e-04	ci right 6.405053e-04	k: 869	n:1450000
Cons ci ratio: 4.593873e-02	ci left: 4.881749e-03	ci right 5.111959e-03	k: 7244	n:1450000
KS ci ratio: 5.140466e-02	ci left: 3.891783e-03	ci right 4.097792e-03	k: 5791	n:1450000
SLIT1   1450000 perm   1343 sec   (1079 perm/sec)   p_kst 3.993793e-03   p_cons 4.995862e-03   p_joint 5.993103e-04

Joint ci ratio: 1.323292e-01	ci left: 5.609308e-04	ci right 6.410718e-04	k: 876	n:1460000
Cons ci ratio: 4.574953e-02	ci left: 4.888938e-03	ci right 5.118512e-03	k: 7304	n:1460000
KS ci ratio: 5.125014e-02	ci left: 3.888792e-03	ci right 4.094005e-03	k: 5826	n:1460000
SLIT1   1460000 perm   1359 sec   (1074 perm/sec)   p_kst 3.990411e-03   p_cons 5.002740e-03   p_joint 6.000000e-04

Joint ci ratio: 1.319536e-01	ci left: 5.604039e-04	ci right 6.402245e-04	k: 881	n:1470000
Cons ci ratio: 4.559999e-02	ci left: 4.887960e-03	ci right 5.116718e-03	k: 7352	n:1470000
KS ci ratio: 5.104457e-02	ci left: 3.893902e-03	ci right 4.098536e-03	k: 5873	n:1470000
SLIT1   1470000 perm   1374 sec   (1070 perm/sec)   p_kst 3.995238e-03   p_cons 5.001361e-03   p_joint 5.993197e-04

Joint ci ratio: 1.331680e-01	ci left: 5.461648e-04	ci right 6.247299e-04	k: 865	n:1480000
Cons ci ratio: 4.542724e-02	ci left: 4.892341e-03	ci right 5.120414e-03	k: 7408	n:1480000
KS ci ratio: 5.086733e-02	ci left: 3.894941e-03	ci right 4.098899e-03	k: 5914	n:1480000
SLIT1   1480000 perm   1390 sec   (1065 perm/sec)   p_kst 3.995946e-03   p_cons 5.005405e-03   p_joint 5.844595e-04

Joint ci ratio: 1.324055e-01	ci left: 5.489878e-04	ci right 6.274712e-04	k: 875	n:1490000
Cons ci ratio: 4.527168e-02	ci left: 4.893346e-03	ci right 5.120665e-03	k: 7459	n:1490000
KS ci ratio: 5.064500e-02	ci left: 3.903258e-03	ci right 4.106731e-03	k: 5966	n:1490000
SLIT1   1490000 perm   1406 sec   (1059 perm/sec)   p_kst 4.004027e-03   p_cons 5.006040e-03   p_joint 5.872483e-04

Joint ci ratio: 1.318050e-01	ci left: 5.504849e-04	ci right 6.287975e-04	k: 883	n:1500000
Cons ci ratio: 4.509960e-02	ci left: 4.898295e-03	ci right 5.124956e-03	k: 7516	n:1500000
KS ci ratio: 5.050143e-02	ci left: 3.899616e-03	ci right 4.102307e-03	k: 6000	n:1500000
SLIT1   1500000 perm   1422 sec   (1055 perm/sec)   p_kst 4.000000e-03   p_cons 5.010667e-03   p_joint 5.886667e-04

Joint ci ratio: 1.317307e-01	ci left: 5.474797e-04	ci right 6.253174e-04	k: 884	n:1510000
Cons ci ratio: 4.494140e-02	ci left: 4.900560e-03	ci right 5.126510e-03	k: 7569	n:1510000
KS ci ratio: 5.035069e-02	ci left: 3.897331e-03	ci right 4.099281e-03	k: 6036	n:1510000
SLIT1   1510000 perm   1438 sec   (1050 perm/sec)   p_kst 3.997351e-03   p_cons 5.012583e-03   p_joint 5.854305e-04

Joint ci ratio: 1.312864e-01	ci left: 5.476954e-04	ci right 6.252807e-04	k: 890	n:1520000
Cons ci ratio: 4.479076e-02	ci left: 4.901496e-03	ci right 5.126712e-03	k: 7620	n:1520000
KS ci ratio: 5.020545e-02	ci left: 3.894427e-03	ci right 4.095628e-03	k: 6071	n:1520000
SLIT1   1520000 perm   1454 sec   (1046 perm/sec)   p_kst 3.994079e-03   p_cons 5.013158e-03   p_joint 5.855263e-04

Joint ci ratio: 1.315084e-01	ci left: 5.422192e-04	ci right 6.191688e-04	k: 887	n:1530000
Cons ci ratio: 4.466797e-02	ci left: 4.896604e-03	ci right 5.120963e-03	k: 7662	n:1530000
KS ci ratio: 5.007381e-02	ci left: 3.889626e-03	ci right 4.090036e-03	k: 6103	n:1530000
SLIT1   1530000 perm   1470 sec   (1041 perm/sec)   p_kst 3.988889e-03   p_cons 5.007843e-03   p_joint 5.797386e-04

Joint ci ratio: 1.311397e-01	ci left: 5.418384e-04	ci right 6.185016e-04	k: 892	n:1540000
Cons ci ratio: 4.450556e-02	ci left: 4.900766e-03	ci right 5.124478e-03	k: 7718	n:1540000
KS ci ratio: 4.991054e-02	ci left: 3.890018e-03	ci right 4.089776e-03	k: 6143	n:1540000
SLIT1   1540000 perm   1487 sec   (1036 perm/sec)   p_kst 3.988961e-03   p_cons 5.011688e-03   p_joint 5.792208e-04

Joint ci ratio: 1.308471e-01	ci left: 5.408387e-04	ci right 6.171764e-04	k: 896	n:1550000
Cons ci ratio: 4.435064e-02	ci left: 4.903600e-03	ci right 5.126643e-03	k: 7772	n:1550000
KS ci ratio: 4.978120e-02	ci left: 3.885309e-03	ci right 4.084293e-03	k: 6175	n:1550000
SLIT1   1550000 perm   1504 sec   (1031 perm/sec)   p_kst 3.983871e-03   p_cons 5.014194e-03   p_joint 5.780645e-04

Joint ci ratio: 1.306289e-01	ci left: 5.392320e-04	ci right 6.152061e-04	k: 899	n:1560000
Cons ci ratio: 4.423426e-02	ci left: 4.898157e-03	ci right 5.120353e-03	k: 7813	n:1560000
KS ci ratio: 4.966892e-02	ci left: 3.878128e-03	ci right 4.076284e-03	k: 6203	n:1560000
SLIT1   1560000 perm   1520 sec   (1027 perm/sec)   p_kst 3.976282e-03   p_cons 5.008333e-03   p_joint 5.762821e-04

Joint ci ratio: 1.299090e-01	ci left: 5.419593e-04	ci right 6.178645e-04	k: 909	n:1570000
Cons ci ratio: 4.409342e-02	ci left: 4.898454e-03	ci right 5.119938e-03	k: 7863	n:1570000
KS ci ratio: 4.948968e-02	ci left: 3.881734e-03	ci right 4.079338e-03	k: 6248	n:1570000
SLIT1   1570000 perm   1536 sec   (1022 perm/sec)   p_kst 3.979618e-03   p_cons 5.008280e-03   p_joint 5.789809e-04

Joint ci ratio: 1.295536e-01	ci left: 5.415910e-04	ci right 6.172211e-04	k: 914	n:1580000
Cons ci ratio: 4.397067e-02	ci left: 4.894993e-03	ci right 5.115688e-03	k: 7907	n:1580000
KS ci ratio: 4.935568e-02	ci left: 3.878419e-03	ci right 4.075305e-03	k: 6282	n:1580000
SLIT1   1580000 perm   1553 sec   (1018 perm/sec)   p_kst 3.975949e-03   p_cons 5.004430e-03   p_joint 5.784810e-04

Joint ci ratio: 1.304123e-01	ci left: 5.308828e-04	ci right 6.055470e-04	k: 902	n:1590000
Cons ci ratio: 4.380466e-02	ci left: 4.901529e-03	ci right 5.121664e-03	k: 7967	n:1590000
KS ci ratio: 4.917200e-02	ci left: 3.883222e-03	ci right 4.079597e-03	k: 6329	n:1590000
SLIT1   1590000 perm   1569 sec   (1013 perm/sec)   p_kst 3.980503e-03   p_cons 5.010692e-03   p_joint 5.672956e-04

Joint ci ratio: 1.301245e-01	ci left: 5.299833e-04	ci right 6.043438e-04	k: 906	n:1600000
Cons ci ratio: 4.369800e-02	ci left: 4.895002e-03	ci right 5.114295e-03	k: 8006	n:1600000
KS ci ratio: 4.901350e-02	ci left: 3.884263e-03	ci right 4.080039e-03	k: 6370	n:1600000
SLIT1   1600000 perm   1585 sec   (1009 perm/sec)   p_kst 3.981250e-03   p_cons 5.003750e-03   p_joint 5.662500e-04

Joint ci ratio: 1.214563e-01	ci left: 6.073069e-04	ci right 6.864327e-04	k: 1040	n:1610000
Cons ci ratio: 4.352151e-02	ci left: 4.904532e-03	ci right 5.123342e-03	k: 8071	n:1610000
KS ci ratio: 4.885653e-02	ci left: 3.885291e-03	ci right 4.080475e-03	k: 6411	n:1610000
SLIT1   1610000 perm   1602 sec   (1005 perm/sec)   p_kst 3.981988e-03   p_cons 5.013043e-03   p_joint 6.459627e-04

Joint ci ratio: 1.211078e-01	ci left: 6.071494e-04	ci right 6.860115e-04	k: 1046	n:1620000
Cons ci ratio: 4.338197e-02	ci left: 4.906007e-03	ci right 5.124164e-03	k: 8123	n:1620000
KS ci ratio: 4.868970e-02	ci left: 3.888137e-03	ci right 4.082778e-03	k: 6455	n:1620000
SLIT1   1620000 perm   1619 sec   (1000 perm/sec)   p_kst 3.984568e-03   p_cons 5.014198e-03   p_joint 6.456790e-04

Joint ci ratio: 1.208197e-01	ci left: 6.063992e-04	ci right 6.849631e-04	k: 1051	n:1630000
Cons ci ratio: 4.325973e-02	ci left: 4.903824e-03	ci right 5.121254e-03	k: 8169	n:1630000
KS ci ratio: 4.856208e-02	ci left: 3.884889e-03	ci right 4.078843e-03	k: 6489	n:1630000
SLIT1   1630000 perm   1636 sec   (996 perm/sec)   p_kst 3.980982e-03   p_cons 5.011656e-03   p_joint 6.447853e-04

Joint ci ratio: 1.212242e-01	ci left: 5.985624e-04	ci right 6.763893e-04	k: 1044	n:1640000
Cons ci ratio: 4.312005e-02	ci left: 4.905891e-03	ci right 5.122692e-03	k: 8222	n:1640000
KS ci ratio: 4.845037e-02	ci left: 3.879271e-03	ci right 4.072487e-03	k: 6519	n:1640000
SLIT1   1640000 perm   1653 sec   (992 perm/sec)   p_kst 3.975000e-03   p_cons 5.013415e-03   p_joint 6.365854e-04

Joint ci ratio: 1.209353e-01	ci left: 5.978733e-04	ci right 6.754120e-04	k: 1049	n:1650000
Cons ci ratio: 4.298172e-02	ci left: 4.907933e-03	ci right 5.124113e-03	k: 8275	n:1650000
KS ci ratio: 4.834685e-02	ci left: 3.872524e-03	ci right 4.064981e-03	k: 6547	n:1650000
SLIT1   1650000 perm   1670 sec   (988 perm/sec)   p_kst 3.967879e-03   p_cons 5.015152e-03   p_joint 6.357576e-04

Joint ci ratio: 1.207630e-01	ci left: 5.960242e-04	ci right 6.732051e-04	k: 1052	n:1660000
Cons ci ratio: 4.288354e-02	ci left: 4.901013e-03	ci right 5.116382e-03	k: 8313	n:1660000
KS ci ratio: 4.819984e-02	ci left: 3.873002e-03	ci right 4.064880e-03	k: 6587	n:1660000
SLIT1   1660000 perm   1687 sec   (984 perm/sec)   p_kst 3.968072e-03   p_cons 5.007831e-03   p_joint 6.337349e-04

Joint ci ratio: 1.203068e-01	ci left: 5.971012e-04	ci right 6.741087e-04	k: 1060	n:1670000
Cons ci ratio: 4.275774e-02	ci left: 4.900693e-03	ci right 5.115401e-03	k: 8362	n:1670000
KS ci ratio: 4.808332e-02	ci left: 3.868741e-03	ci right 4.059932e-03	k: 6619	n:1670000
SLIT1   1670000 perm   1704 sec   (980 perm/sec)   p_kst 3.963473e-03   p_cons 5.007186e-03   p_joint 6.347305e-04

Joint ci ratio: 1.197997e-01	ci left: 5.987433e-04	ci right 6.756141e-04	k: 1069	n:1680000
Cons ci ratio: 4.263049e-02	ci left: 4.900966e-03	ci right 5.115031e-03	k: 8412	n:1680000
KS ci ratio: 4.793509e-02	ci left: 3.869824e-03	ci right 4.060463e-03	k: 6660	n:1680000
SLIT1   1680000 perm   1721 sec   (976 perm/sec)   p_kst 3.964286e-03   p_cons 5.007143e-03   p_joint 6.363095e-04

Joint ci ratio: 1.192436e-01	ci left: 6.009408e-04	ci right 6.777103e-04	k: 1079	n:1690000
Cons ci ratio: 4.252711e-02	ci left: 4.895968e-03	ci right 5.109284e-03	k: 8453	n:1690000
KS ci ratio: 4.778822e-02	ci left: 3.870896e-03	ci right 4.060987e-03	k: 6701	n:1690000
SLIT1   1690000 perm   1738 sec   (972 perm/sec)   p_kst 3.965089e-03   p_cons 5.001775e-03   p_joint 6.384615e-04

Joint ci ratio: 1.191335e-01	ci left: 5.985472e-04	ci right 6.749353e-04	k: 1081	n:1700000
Cons ci ratio: 4.239940e-02	ci left: 4.896850e-03	ci right 5.109548e-03	k: 8504	n:1700000
KS ci ratio: 4.764624e-02	ci left: 3.871375e-03	ci right 4.060909e-03	k: 6741	n:1700000
SLIT1   1700000 perm   1756 sec   (968 perm/sec)   p_kst 3.965294e-03   p_cons 5.002353e-03   p_joint 6.358824e-04

Joint ci ratio: 1.190237e-01	ci left: 5.961816e-04	ci right 6.721928e-04	k: 1083	n:1710000
Cons ci ratio: 4.224555e-02	ci left: 4.904088e-03	ci right 5.116308e-03	k: 8566	n:1710000
KS ci ratio: 4.749498e-02	ci left: 3.873582e-03	ci right 4.062607e-03	k: 6784	n:1710000
SLIT1   1710000 perm   1773 sec   (964 perm/sec)   p_kst 3.967251e-03   p_cons 5.009357e-03   p_joint 6.333333e-04

Joint ci ratio: 1.186957e-01	ci left: 5.961001e-04	ci right 6.718767e-04	k: 1089	n:1720000
Cons ci ratio: 4.211298e-02	ci left: 4.906640e-03	ci right 5.118288e-03	k: 8620	n:1720000
KS ci ratio: 4.736256e-02	ci left: 3.872893e-03	ci right 4.061342e-03	k: 6822	n:1720000
SLIT1   1720000 perm   1791 sec   (960 perm/sec)   p_kst 3.966279e-03   p_cons 5.011628e-03   p_joint 6.331395e-04

Joint ci ratio: 1.181011e-01	ci left: 5.988246e-04	ci right 6.745396e-04	k: 1100	n:1730000
Cons ci ratio: 4.199382e-02	ci left: 4.906304e-03	ci right 5.117324e-03	k: 8669	n:1730000
KS ci ratio: 4.718638e-02	ci left: 3.879638e-03	ci right 4.067694e-03	k: 6873	n:1730000
SLIT1   1730000 perm   1808 sec   (957 perm/sec)   p_kst 3.972832e-03   p_cons 5.010983e-03   p_joint 6.358382e-04

Joint ci ratio: 1.179407e-01	ci left: 5.970563e-04	ci right 6.724380e-04	k: 1103	n:1740000
Cons ci ratio: 4.186361e-02	ci left: 4.908816e-03	ci right 5.119274e-03	k: 8723	n:1740000
KS ci ratio: 4.706677e-02	ci left: 3.877219e-03	ci right 4.064668e-03	k: 6908	n:1740000
SLIT1   1740000 perm   1826 sec   (953 perm/sec)   p_kst 3.970115e-03   p_cons 5.013218e-03   p_joint 6.339080e-04

Joint ci ratio: 1.176745e-01	ci left: 5.964174e-04	ci right 6.715368e-04	k: 1108	n:1750000
Cons ci ratio: 4.172743e-02	ci left: 4.912997e-03	ci right 5.122932e-03	k: 8780	n:1750000
KS ci ratio: 4.693450e-02	ci left: 3.877087e-03	ci right 4.063989e-03	k: 6947	n:1750000
SLIT1   1750000 perm   1844 sec   (949 perm/sec)   p_kst 3.969714e-03   p_cons 5.017143e-03   p_joint 6.331429e-04

Joint ci ratio: 1.172523e-01	ci left: 5.974406e-04	ci right 6.724002e-04	k: 1116	n:1760000
Cons ci ratio: 4.157839e-02	ci left: 4.920505e-03	ci right 5.129993e-03	k: 8843	n:1760000
KS ci ratio: 4.680334e-02	ci left: 3.876957e-03	ci right 4.063317e-03	k: 6986	n:1760000
SLIT1   1760000 perm   1862 sec   (945 perm/sec)   p_kst 3.969318e-03   p_cons 5.024432e-03   p_joint 6.340909e-04

Joint ci ratio: 1.173051e-01	ci left: 5.935168e-04	ci right 6.680198e-04	k: 1115	n:1770000
Cons ci ratio: 4.145901e-02	ci left: 4.921220e-03	ci right 5.130122e-03	k: 8894	n:1770000
KS ci ratio: 4.664994e-02	ci left: 3.880739e-03	ci right 4.066653e-03	k: 7032	n:1770000
SLIT1   1770000 perm   1880 sec   (942 perm/sec)   p_kst 3.972881e-03   p_cons 5.024859e-03   p_joint 6.299435e-04

Joint ci ratio: 1.170432e-01	ci left: 5.929091e-04	ci right 6.671582e-04	k: 1120	n:1780000
Cons ci ratio: 4.134066e-02	ci left: 4.921928e-03	ci right 5.130249e-03	k: 8945	n:1780000
KS ci ratio: 4.650794e-02	ci left: 3.882813e-03	ci right 4.068245e-03	k: 7075	n:1780000
SLIT1   1780000 perm   1898 sec   (938 perm/sec)   p_kst 3.974719e-03   p_cons 5.025281e-03   p_joint 6.292135e-04

Joint ci ratio: 1.167313e-01	ci left: 5.928507e-04	ci right 6.668810e-04	k: 1126	n:1790000
Cons ci ratio: 4.120491e-02	ci left: 4.927052e-03	ci right 5.134890e-03	k: 9004	n:1790000
KS ci ratio: 4.639668e-02	ci left: 3.879895e-03	ci right 4.064732e-03	k: 7109	n:1790000
SLIT1   1790000 perm   1916 sec   (934 perm/sec)   p_kst 3.971508e-03   p_cons 5.030168e-03   p_joint 6.290503e-04

Joint ci ratio: 1.164732e-01	ci left: 5.922538e-04	ci right 6.660349e-04	k: 1131	n:1800000
Cons ci ratio: 4.110696e-02	ci left: 4.923322e-03	ci right 5.130497e-03	k: 9047	n:1800000
KS ci ratio: 4.625048e-02	ci left: 3.883051e-03	ci right 4.067440e-03	k: 7154	n:1800000
SLIT1   1800000 perm   1934 sec   (931 perm/sec)   p_kst 3.974444e-03   p_cons 5.026111e-03   p_joint 6.283333e-04

Joint ci ratio: 1.162681e-01	ci left: 5.911273e-04	ci right 6.646294e-04	k: 1135	n:1810000
Cons ci ratio: 4.100744e-02	ci left: 4.920181e-03	ci right 5.126711e-03	k: 9091	n:1810000
KS ci ratio: 4.613461e-02	ci left: 3.881257e-03	ci right 4.065087e-03	k: 7190	n:1810000
SLIT1   1810000 perm   1952 sec   (927 perm/sec)   p_kst 3.972376e-03   p_cons 5.022652e-03   p_joint 6.270718e-04

Joint ci ratio: 1.159115e-01	ci left: 5.916138e-04	ci right 6.649354e-04	k: 1142	n:1820000
Cons ci ratio: 4.090865e-02	ci left: 4.917076e-03	ci right 5.122966e-03	k: 9135	n:1820000
KS ci ratio: 4.602281e-02	ci left: 3.878941e-03	ci right 4.062204e-03	k: 7225	n:1820000
SLIT1   1820000 perm   1971 sec   (924 perm/sec)   p_kst 3.969780e-03   p_cons 5.019231e-03   p_joint 6.274725e-04

Joint ci ratio: 1.163710e-01	ci left: 5.836057e-04	ci right 6.562412e-04	k: 1133	n:1830000
Cons ci ratio: 4.078155e-02	ci left: 4.921036e-03	ci right 5.126437e-03	k: 9192	n:1830000
KS ci ratio: 4.592134e-02	ci left: 3.875029e-03	ci right 4.057693e-03	k: 7257	n:1830000
SLIT1   1830000 perm   1989 sec   (920 perm/sec)   p_kst 3.965574e-03   p_cons 5.022951e-03   p_joint 6.191257e-04

Joint ci ratio: 1.164740e-01	ci left: 5.793785e-04	ci right 6.515561e-04	k: 1131	n:1840000
Cons ci ratio: 4.067552e-02	ci left: 4.920112e-03	ci right 5.124929e-03	k: 9240	n:1840000
KS ci ratio: 4.580477e-02	ci left: 3.873847e-03	ci right 4.055980e-03	k: 7294	n:1840000
SLIT1   1840000 perm   2008 sec   (916 perm/sec)   p_kst 3.964130e-03   p_cons 5.021739e-03   p_joint 6.146739e-04

Joint ci ratio: 1.161155e-01	ci left: 5.799205e-04	ci right 6.519280e-04	k: 1138	n:1850000
Cons ci ratio: 4.055277e-02	ci left: 4.923480e-03	ci right 5.127804e-03	k: 9296	n:1850000
KS ci ratio: 4.566095e-02	ci left: 3.877488e-03	ci right 4.059205e-03	k: 7340	n:1850000
SLIT1   1850000 perm   2027 sec   (913 perm/sec)   p_kst 3.967568e-03   p_cons 5.024865e-03   p_joint 6.151351e-04

Joint ci ratio: 1.157603e-01	ci left: 5.804569e-04	ci right 6.522955e-04	k: 1145	n:1860000
Cons ci ratio: 4.043112e-02	ci left: 4.926813e-03	ci right 5.130647e-03	k: 9352	n:1860000
KS ci ratio: 4.554635e-02	ci left: 3.876307e-03	ci right 4.057501e-03	k: 7377	n:1860000
SLIT1   1860000 perm   2046 sec   (909 perm/sec)   p_kst 3.966129e-03   p_cons 5.027957e-03   p_joint 6.155914e-04

Joint ci ratio: 1.153084e-01	ci left: 5.820267e-04	ci right 6.537591e-04	k: 1154	n:1870000
Cons ci ratio: 4.033427e-02	ci left: 4.924287e-03	ci right 5.127518e-03	k: 9397	n:1870000
KS ci ratio: 4.541723e-02	ci left: 3.877783e-03	ci right 4.058518e-03	k: 7419	n:1870000
SLIT1   1870000 perm   2064 sec   (906 perm/sec)   p_kst 3.967380e-03   p_cons 5.025134e-03   p_joint 6.171123e-04

Joint ci ratio: 1.149605e-01	ci left: 5.825470e-04	ci right 6.541123e-04	k: 1161	n:1880000
Cons ci ratio: 4.026168e-02	ci left: 4.915997e-03	ci right 5.118511e-03	k: 9431	n:1880000
KS ci ratio: 4.528007e-02	ci left: 3.880821e-03	ci right 4.061137e-03	k: 7464	n:1880000
SLIT1   1880000 perm   2083 sec   (902 perm/sec)   p_kst 3.970213e-03   p_cons 5.016489e-03   p_joint 6.175532e-04

Joint ci ratio: 1.145667e-01	ci left: 5.835760e-04	ci right 6.550056e-04	k: 1169	n:1890000
Cons ci ratio: 4.016390e-02	ci left: 4.914080e-03	ci right 5.116013e-03	k: 9477	n:1890000
KS ci ratio: 4.515018e-02	ci left: 3.882782e-03	ci right 4.062658e-03	k: 7507	n:1890000
SLIT1   1890000 perm   2102 sec   (899 perm/sec)   p_kst 3.971958e-03   p_cons 5.014286e-03   p_joint 6.185185e-04

Joint ci ratio: 1.142741e-01	ci left: 5.835721e-04	ci right 6.548064e-04	k: 1175	n:1900000
Cons ci ratio: 4.007106e-02	ci left: 4.911142e-03	ci right 5.112477e-03	k: 9521	n:1900000
KS ci ratio: 4.506036e-02	ci left: 3.877958e-03	ci right 4.057244e-03	k: 7537	n:1900000
SLIT1   1900000 perm   2121 sec   (896 perm/sec)   p_kst 3.966842e-03   p_cons 5.011053e-03   p_joint 6.184211e-04

Joint ci ratio: 1.137912e-01	ci left: 5.856030e-04	ci right 6.567629e-04	k: 1185	n:1910000
Cons ci ratio: 3.996837e-02	ci left: 4.910827e-03	ci right 5.111621e-03	k: 9570	n:1910000
KS ci ratio: 4.493532e-02	ci left: 3.879396e-03	ci right 4.058238e-03	k: 7579	n:1910000
SLIT1   1910000 perm   2141 sec   (892 perm/sec)   p_kst 3.968063e-03   p_cons 5.010471e-03   p_joint 6.204188e-04

Joint ci ratio: 1.051045e-01	ci left: 6.859009e-04	ci right 7.624930e-04	k: 1389	n:1920000
Cons ci ratio: 3.988730e-02	ci left: 4.905359e-03	ci right 5.105513e-03	k: 9609	n:1920000
KS ci ratio: 4.481132e-02	ci left: 3.880821e-03	ci right 4.059222e-03	k: 7621	n:1920000
SLIT1   1920000 perm   2160 sec   (889 perm/sec)   p_kst 3.969271e-03   p_cons 5.004687e-03   p_joint 7.234375e-04

Joint ci ratio: 1.049537e-01	ci left: 6.843650e-04	ci right 7.606693e-04	k: 1393	n:1930000
Cons ci ratio: 3.975706e-02	ci left: 4.912261e-03	ci right 5.112027e-03	k: 9672	n:1930000
KS ci ratio: 4.467956e-02	ci left: 3.883768e-03	ci right 4.061767e-03	k: 7666	n:1930000
SLIT1   1930000 perm   2180 sec   (886 perm/sec)   p_kst 3.972021e-03   p_cons 5.011399e-03   p_joint 7.217617e-04

Joint ci ratio: 1.047286e-01	ci left: 6.838491e-04	ci right 7.599222e-04	k: 1399	n:1940000
Cons ci ratio: 3.964242e-02	ci left: 4.915519e-03	ci right 5.114829e-03	k: 9728	n:1940000
KS ci ratio: 4.456927e-02	ci left: 3.883118e-03	ci right 4.060636e-03	k: 7704	n:1940000
SLIT1   1940000 perm   2199 sec   (882 perm/sec)   p_kst 3.971134e-03   p_cons 5.014433e-03   p_joint 7.211340e-04

Joint ci ratio: 1.045049e-01	ci left: 6.833385e-04	ci right 7.591826e-04	k: 1405	n:1950000
Cons ci ratio: 3.953282e-02	ci left: 4.917730e-03	ci right 5.116565e-03	k: 9782	n:1950000
KS ci ratio: 4.443387e-02	ci left: 3.887039e-03	ci right 4.064183e-03	k: 7751	n:1950000
SLIT1   1950000 perm   2218 sec   (879 perm/sec)   p_kst 3.974872e-03   p_cons 5.016410e-03   p_joint 7.205128e-04

Joint ci ratio: 1.042827e-01	ci left: 6.828334e-04	ci right 7.584503e-04	k: 1411	n:1960000
Cons ci ratio: 3.944024e-02	ci left: 4.915877e-03	ci right 5.114161e-03	k: 9828	n:1960000
KS ci ratio: 4.427690e-02	ci left: 3.894958e-03	ci right 4.071819e-03	k: 7806	n:1960000
SLIT1   1960000 perm   2238 sec   (876 perm/sec)   p_kst 3.982653e-03   p_cons 5.014286e-03   p_joint 7.198980e-04

Joint ci ratio: 1.041354e-01	ci left: 6.813448e-04	ci right 7.566837e-04	k: 1415	n:1970000
Cons ci ratio: 3.934632e-02	ci left: 4.914546e-03	ci right 5.112294e-03	k: 9875	n:1970000
KS ci ratio: 4.416956e-02	ci left: 3.894262e-03	ci right 4.070653e-03	k: 7844	n:1970000
SLIT1   1970000 perm   2258 sec   (873 perm/sec)   p_kst 3.981726e-03   p_cons 5.012690e-03   p_joint 7.182741e-04

Joint ci ratio: 1.039520e-01	ci left: 6.803631e-04	ci right 7.554530e-04	k: 1420	n:1980000
Cons ci ratio: 3.924709e-02	ci left: 4.914730e-03	ci right 5.111975e-03	k: 9925	n:1980000
KS ci ratio: 4.407983e-02	ci left: 3.890577e-03	ci right 4.066434e-03	k: 7876	n:1980000
SLIT1   1980000 perm   2278 sec   (869 perm/sec)   p_kst 3.977778e-03   p_cons 5.012626e-03   p_joint 7.171717e-04

Joint ci ratio: 1.036244e-01	ci left: 6.813495e-04	ci right 7.562967e-04	k: 1429	n:1990000
Cons ci ratio: 3.916835e-02	ci left: 4.909936e-03	ci right 5.106584e-03	k: 9965	n:1990000
KS ci ratio: 4.398228e-02	ci left: 3.888421e-03	ci right 4.063781e-03	k: 7911	n:1990000
SLIT1   1990000 perm   2297 sec   (866 perm/sec)   p_kst 3.975377e-03   p_cons 5.007538e-03   p_joint 7.180905e-04

Joint ci ratio: 1.035159e-01	ci left: 6.794038e-04	ci right 7.540541e-04	k: 1432	n:2000000
Cons ci ratio: 3.907635e-02	ci left: 4.908656e-03	ci right 5.104781e-03	k: 10012	n:2000000
KS ci ratio: 4.389924e-02	ci left: 3.883814e-03	ci right 4.058627e-03	k: 7941	n:2000000
SLIT1   2000000 perm   2317 sec   (863 perm/sec)   p_kst 3.970500e-03   p_cons 5.006000e-03   p_joint 7.160000e-04

Joint ci ratio: 1.033359e-01	ci left: 6.784469e-04	ci right 7.528545e-04	k: 1437	n:2010000
Cons ci ratio: 3.898499e-02	ci left: 4.907390e-03	ci right 5.102996e-03	k: 10059	n:2010000
KS ci ratio: 4.378084e-02	ci left: 3.885650e-03	ci right 4.060062e-03	k: 7984	n:2010000
SLIT1   2010000 perm   2337 sec   (860 perm/sec)   p_kst 3.972139e-03   p_cons 5.004478e-03   p_joint 7.149254e-04

Joint ci ratio: 1.030853e-01	ci left: 6.784642e-04	ci right 7.526823e-04	k: 1444	n:2020000
Cons ci ratio: 3.889620e-02	ci left: 4.905646e-03	ci right 5.100728e-03	k: 10105	n:2020000
KS ci ratio: 4.366886e-02	ci left: 3.886489e-03	ci right 4.060482e-03	k: 8025	n:2020000
SLIT1   2020000 perm   2357 sec   (857 perm/sec)   p_kst 3.972772e-03   p_cons 5.002475e-03   p_joint 7.148515e-04

Joint ci ratio: 1.027657e-01	ci left: 6.794414e-04	ci right 7.535221e-04	k: 1453	n:2030000
Cons ci ratio: 3.880994e-02	ci left: 4.903432e-03	ci right 5.097984e-03	k: 10150	n:2030000
KS ci ratio: 4.354148e-02	ci left: 3.890245e-03	ci right 4.063885e-03	k: 8072	n:2030000
SLIT1   2030000 perm   2377 sec   (854 perm/sec)   p_kst 3.976355e-03   p_cons 5.000000e-03   p_joint 7.157635e-04

Joint ci ratio: 1.028721e-01	ci left: 6.746779e-04	ci right 7.483200e-04	k: 1450	n:2040000
Cons ci ratio: 3.870899e-02	ci left: 4.905125e-03	ci right 5.099226e-03	k: 10203	n:2040000
KS ci ratio: 4.340716e-02	ci left: 3.895418e-03	ci right 4.068739e-03	k: 8122	n:2040000
SLIT1   2040000 perm   2397 sec   (851 perm/sec)   p_kst 3.981373e-03   p_cons 5.001471e-03   p_joint 7.107843e-04

Joint ci ratio: 1.026249e-01	ci left: 6.747137e-04	ci right 7.481720e-04	k: 1457	n:2050000
Cons ci ratio: 3.861261e-02	ci left: 4.905835e-03	ci right 5.099470e-03	k: 10254	n:2050000
KS ci ratio: 4.331933e-02	ci left: 3.892339e-03	ci right 4.065164e-03	k: 8155	n:2050000
SLIT1   2050000 perm   2417 sec   (848 perm/sec)   p_kst 3.978049e-03   p_cons 5.001951e-03   p_joint 7.107317e-04

Joint ci ratio: 1.024144e-01	ci left: 6.742763e-04	ci right 7.475274e-04	k: 1463	n:2060000
Cons ci ratio: 3.855079e-02	ci left: 4.897885e-03	ci right 5.090890e-03	k: 10287	n:2060000
KS ci ratio: 4.320819e-02	ci left: 3.893612e-03	ci right 4.066039e-03	k: 8197	n:2060000
SLIT1   2060000 perm   2438 sec   (845 perm/sec)   p_kst 3.979126e-03   p_cons 4.993689e-03   p_joint 7.101942e-04

Joint ci ratio: 1.021704e-01	ci left: 6.743141e-04	ci right 7.473843e-04	k: 1470	n:2070000
Cons ci ratio: 3.846306e-02	ci left: 4.896710e-03	ci right 5.089220e-03	k: 10334	n:2070000
KS ci ratio: 4.311893e-02	ci left: 3.891050e-03	ci right 4.062999e-03	k: 8231	n:2070000
SLIT1   2070000 perm   2458 sec   (842 perm/sec)   p_kst 3.976329e-03   p_cons 4.992271e-03   p_joint 7.101449e-04

Joint ci ratio: 1.019973e-01	ci left: 6.734146e-04	ci right 7.462563e-04	k: 1475	n:2080000
Cons ci ratio: 3.838894e-02	ci left: 4.892214e-03	ci right 5.084168e-03	k: 10374	n:2080000
KS ci ratio: 4.300151e-02	ci left: 3.893745e-03	ci right 4.065333e-03	k: 8276	n:2080000
SLIT1   2080000 perm   2478 sec   (839 perm/sec)   p_kst 3.978846e-03   p_cons 4.987500e-03   p_joint 7.091346e-04

Joint ci ratio: 1.031222e-01	ci left: 6.552739e-04	ci right 7.269825e-04	k: 1443	n:2090000
Cons ci ratio: 3.830415e-02	ci left: 4.890605e-03	ci right 5.082063e-03	k: 10420	n:2090000
KS ci ratio: 4.287986e-02	ci left: 3.897362e-03	ci right 4.068611e-03	k: 8323	n:2090000
SLIT1   2090000 perm   2499 sec   (836 perm/sec)   p_kst 3.982297e-03   p_cons 4.985646e-03   p_joint 6.904306e-04

Joint ci ratio: 1.030154e-01	ci left: 6.535453e-04	ci right 7.249861e-04	k: 1446	n:2100000
Cons ci ratio: 3.822176e-02	ci left: 4.888540e-03	ci right 5.079496e-03	k: 10465	n:2100000
KS ci ratio: 4.277977e-02	ci left: 3.897175e-03	ci right 4.068007e-03	k: 8362	n:2100000
SLIT1   2100000 perm   2519 sec   (834 perm/sec)   p_kst 3.981905e-03   p_cons 4.983333e-03   p_joint 6.885714e-04

Joint ci ratio: 1.029088e-01	ci left: 6.518331e-04	ci right 7.230086e-04	k: 1449	n:2110000
Cons ci ratio: 3.811986e-02	ci left: 4.891658e-03	ci right 5.082216e-03	k: 10521	n:2110000
KS ci ratio: 4.268037e-02	ci left: 3.896991e-03	ci right 4.067408e-03	k: 8401	n:2110000
SLIT1   2110000 perm   2540 sec   (831 perm/sec)   p_kst 3.981517e-03   p_cons 4.986256e-03   p_joint 6.867299e-04

Joint ci ratio: 1.026613e-01	ci left: 6.519754e-04	ci right 7.229849e-04	k: 1456	n:2120000
Cons ci ratio: 3.804407e-02	ci left: 4.888207e-03	ci right 5.078243e-03	k: 10563	n:2120000
KS ci ratio: 4.258927e-02	ci left: 3.895409e-03	ci right 4.065384e-03	k: 8437	n:2120000
SLIT1   2120000 perm   2560 sec   (828 perm/sec)   p_kst 3.979717e-03   p_cons 4.982547e-03   p_joint 6.867925e-04

Joint ci ratio: 1.055269e-01	ci left: 6.132473e-04	ci right 6.820188e-04	k: 1378	n:2130000
Cons ci ratio: 3.794897e-02	ci left: 4.889904e-03	ci right 5.079521e-03	k: 10616	n:2130000
KS ci ratio: 4.246103e-02	ci left: 3.900810e-03	ci right 4.070496e-03	k: 8488	n:2130000
SLIT1   2130000 perm   2581 sec   (825 perm/sec)   p_kst 3.984977e-03   p_cons 4.984038e-03   p_joint 6.469484e-04

Joint ci ratio: 1.053361e-01	ci left: 6.126565e-04	ci right 6.812298e-04	k: 1383	n:2140000
Cons ci ratio: 3.786706e-02	ci left: 4.888346e-03	ci right 5.077484e-03	k: 10662	n:2140000
KS ci ratio: 4.239130e-02	ci left: 3.895527e-03	ci right 4.064698e-03	k: 8516	n:2140000
SLIT1   2140000 perm   2602 sec   (822 perm/sec)   p_kst 3.979439e-03   p_cons 4.982243e-03   p_joint 6.462617e-04

Joint ci ratio: 1.049953e-01	ci left: 6.138829e-04	ci right 6.823574e-04	k: 1392	n:2150000
Cons ci ratio: 3.777504e-02	ci left: 4.889566e-03	ci right 5.078282e-03	k: 10714	n:2150000
KS ci ratio: 4.230203e-02	ci left: 3.893975e-03	ci right 4.062714e-03	k: 8552	n:2150000
SLIT1   2150000 perm   2624 sec   (819 perm/sec)   p_kst 3.977674e-03   p_cons 4.983256e-03   p_joint 6.474419e-04

Joint ci ratio: 1.047324e-01	ci left: 6.141966e-04	ci right 6.825241e-04	k: 1399	n:2160000
Cons ci ratio: 3.767315e-02	ci left: 4.893528e-03	ci right 5.081877e-03	k: 10772	n:2160000
KS ci ratio: 4.219852e-02	ci left: 3.895187e-03	ci right 4.063555e-03	k: 8594	n:2160000
SLIT1   2160000 perm   2645 sec   (817 perm/sec)   p_kst 3.978704e-03   p_cons 4.987037e-03   p_joint 6.476852e-04

Joint ci ratio: 1.044716e-01	ci left: 6.145076e-04	ci right 6.826889e-04	k: 1406	n:2170000
Cons ci ratio: 3.758253e-02	ci left: 4.894715e-03	ci right 5.082646e-03	k: 10824	n:2170000
KS ci ratio: 4.210312e-02	ci left: 3.895019e-03	ci right 4.062991e-03	k: 8633	n:2170000
SLIT1   2170000 perm   2666 sec   (814 perm/sec)   p_kst 3.978341e-03   p_cons 4.988018e-03   p_joint 6.479263e-04

Joint ci ratio: 1.042495e-01	ci left: 6.143692e-04	ci right 6.823815e-04	k: 1412	n:2180000
Cons ci ratio: 3.750817e-02	ci left: 4.891802e-03	ci right 5.079242e-03	k: 10867	n:2180000
KS ci ratio: 4.200592e-02	ci left: 3.895308e-03	ci right 4.062895e-03	k: 8673	n:2180000
SLIT1   2180000 perm   2687 sec   (811 perm/sec)   p_kst 3.978440e-03   p_cons 4.984862e-03   p_joint 6.477064e-04

Joint ci ratio: 1.041023e-01	ci left: 6.133428e-04	ci right 6.811396e-04	k: 1416	n:2190000
Cons ci ratio: 3.743425e-02	ci left: 4.888916e-03	ci right 5.075867e-03	k: 10910	n:2190000
KS ci ratio: 4.191906e-02	ci left: 3.893787e-03	ci right 4.060953e-03	k: 8709	n:2190000
SLIT1   2190000 perm   2709 sec   (809 perm/sec)   p_kst 3.976712e-03   p_cons 4.981735e-03   p_joint 6.465753e-04

Joint ci ratio: 1.038826e-01	ci left: 6.132112e-04	ci right 6.808417e-04	k: 1422	n:2200000
Cons ci ratio: 3.736076e-02	ci left: 4.886056e-03	ci right 5.072524e-03	k: 10953	n:2200000
KS ci ratio: 4.183033e-02	ci left: 3.892730e-03	ci right 4.059489e-03	k: 8746	n:2200000
SLIT1   2200000 perm   2730 sec   (806 perm/sec)   p_kst 3.975455e-03   p_cons 4.978636e-03   p_joint 6.463636e-04

Joint ci ratio: 1.049585e-01	ci left: 5.976568e-04	ci right 6.642965e-04	k: 1393	n:2210000
Cons ci ratio: 3.727578e-02	ci left: 4.886360e-03	ci right 5.072407e-03	k: 11003	n:2210000
KS ci ratio: 4.170881e-02	ci left: 3.897952e-03	ci right 4.064438e-03	k: 8797	n:2210000
SLIT1   2210000 perm   2752 sec   (803 perm/sec)   p_kst 3.980543e-03   p_cons 4.978733e-03   p_joint 6.303167e-04

Joint ci ratio: 1.046959e-01	ci left: 5.980351e-04	ci right 6.645400e-04	k: 1400	n:2220000
Cons ci ratio: 3.720322e-02	ci left: 4.883539e-03	ci right 5.069108e-03	k: 11046	n:2220000
KS ci ratio: 4.158834e-02	ci left: 3.903128e-03	ci right 4.069341e-03	k: 8848	n:2220000
SLIT1   2220000 perm   2774 sec   (800 perm/sec)   p_kst 3.985586e-03   p_cons 4.975676e-03   p_joint 6.306306e-04

Joint ci ratio: 1.042872e-01	ci left: 6.001572e-04	ci right 6.666216e-04	k: 1411	n:2230000
Cons ci ratio: 3.711427e-02	ci left: 4.885185e-03	ci right 5.070364e-03	k: 11099	n:2230000
KS ci ratio: 4.148529e-02	ci left: 3.905151e-03	ci right 4.071029e-03	k: 8892	n:2230000
SLIT1   2230000 perm   2796 sec   (798 perm/sec)   p_kst 3.987444e-03   p_cons 4.977130e-03   p_joint 6.327354e-04

Joint ci ratio: 1.040297e-01	ci left: 6.005215e-04	ci right 6.668519e-04	k: 1418	n:2240000
Cons ci ratio: 3.705100e-02	ci left: 4.880183e-03	ci right 5.064850e-03	k: 11137	n:2240000
KS ci ratio: 4.140860e-02	ci left: 3.902297e-03	ci right 4.067740e-03	k: 8925	n:2240000
SLIT1   2240000 perm   2817 sec   (795 perm/sec)   p_kst 3.984375e-03   p_cons 4.971875e-03   p_joint 6.330357e-04

Joint ci ratio: 1.039199e-01	ci left: 5.991512e-04	ci right 6.652562e-04	k: 1421	n:2250000
Cons ci ratio: 3.697476e-02	ci left: 4.878749e-03	ci right 5.062973e-03	k: 11183	n:2250000
KS ci ratio: 4.130687e-02	ci left: 3.904307e-03	ci right 4.069419e-03	k: 8969	n:2250000
SLIT1   2250000 perm   2839 sec   (793 perm/sec)   p_kst 3.986222e-03   p_cons 4.970222e-03   p_joint 6.315556e-04

Joint ci ratio: 1.043987e-01	ci left: 5.908976e-04	ci right 6.564107e-04	k: 1408	n:2260000
Cons ci ratio: 3.689403e-02	ci left: 4.878643e-03	ci right 5.062452e-03	k: 11232	n:2260000
KS ci ratio: 4.122427e-02	ci left: 3.902796e-03	ci right 4.067506e-03	k: 9005	n:2260000
SLIT1   2260000 perm   2861 sec   (790 perm/sec)   p_kst 3.984513e-03   p_cons 4.969912e-03   p_joint 6.230088e-04

Joint ci ratio: 1.041403e-01	ci left: 5.912978e-04	ci right 6.566831e-04	k: 1415	n:2270000
Cons ci ratio: 3.682203e-02	ci left: 4.876355e-03	ci right 5.059713e-03	k: 11276	n:2270000
KS ci ratio: 4.114444e-02	ci left: 3.900862e-03	ci right 4.065165e-03	k: 9040	n:2270000
SLIT1   2270000 perm   2883 sec   (787 perm/sec)   p_kst 3.982379e-03   p_cons 4.967401e-03   p_joint 6.233480e-04

Joint ci ratio: 1.043249e-01	ci left: 5.865685e-04	ci right 6.515529e-04	k: 1410	n:2280000
Cons ci ratio: 3.673415e-02	ci left: 4.878434e-03	ci right 5.061423e-03	k: 11330	n:2280000
KS ci ratio: 4.106280e-02	ci left: 3.899381e-03	ci right 4.063287e-03	k: 9076	n:2280000
SLIT1   2280000 perm   2905 sec   (785 perm/sec)   p_kst 3.980702e-03   p_cons 4.969298e-03   p_joint 6.184211e-04

Joint ci ratio: 1.041038e-01	ci left: 5.865588e-04	ci right 6.513960e-04	k: 1416	n:2290000
Cons ci ratio: 3.665337e-02	ci left: 4.878765e-03	ci right 5.061355e-03	k: 11380	n:2290000
KS ci ratio: 4.098165e-02	ci left: 3.897912e-03	ci right 4.061425e-03	k: 9112	n:2290000
SLIT1   2290000 perm   2928 sec   (782 perm/sec)   p_kst 3.979039e-03   p_cons 4.969432e-03   p_joint 6.183406e-04

Joint ci ratio: 1.037020e-01	ci left: 5.886669e-04	ci right 6.534707e-04	k: 1427	n:2300000
Cons ci ratio: 3.654902e-02	ci left: 4.885555e-03	ci right 5.067868e-03	k: 11445	n:2300000
KS ci ratio: 4.089200e-02	ci left: 3.898178e-03	ci right 4.061336e-03	k: 9152	n:2300000
SLIT1   2300000 perm   2950 sec   (780 perm/sec)   p_kst 3.979130e-03   p_cons 4.976087e-03   p_joint 6.204348e-04

Joint ci ratio: 1.033767e-01	ci left: 5.899138e-04	ci right 6.546387e-04	k: 1436	n:2310000
Cons ci ratio: 3.646308e-02	ci left: 4.887569e-03	ci right 5.069519e-03	k: 11499	n:2310000
KS ci ratio: 4.079403e-02	ci left: 3.900156e-03	ci right 4.062996e-03	k: 9196	n:2310000
SLIT1   2310000 perm   2972 sec   (777 perm/sec)   p_kst 3.980952e-03   p_cons 4.977922e-03   p_joint 6.216450e-04

Joint ci ratio: 1.028766e-01	ci left: 5.932500e-04	ci right 6.580070e-04	k: 1450	n:2320000
Cons ci ratio: 3.637774e-02	ci left: 4.889566e-03	ci right 5.071156e-03	k: 11553	n:2320000
KS ci ratio: 4.069013e-02	ci left: 3.903397e-03	ci right 4.065948e-03	k: 9243	n:2320000
SLIT1   2320000 perm   2994 sec   (775 perm/sec)   p_kst 3.984052e-03   p_cons 4.979741e-03   p_joint 6.250000e-04

Joint ci ratio: 1.028767e-01	ci left: 5.907038e-04	ci right 6.551830e-04	k: 1450	n:2330000
Cons ci ratio: 3.629456e-02	ci left: 4.891121e-03	ci right 5.072344e-03	k: 11606	n:2330000
KS ci ratio: 4.061116e-02	ci left: 3.901938e-03	ci right 4.064106e-03	k: 9279	n:2330000
SLIT1   2330000 perm   3017 sec   (772 perm/sec)   p_kst 3.982403e-03   p_cons 4.981116e-03   p_joint 6.223176e-04

Joint ci ratio: 1.026999e-01	ci left: 5.902613e-04	ci right 6.545748e-04	k: 1455	n:2340000
Cons ci ratio: 3.621664e-02	ci left: 4.891393e-03	ci right 5.072229e-03	k: 11656	n:2340000
KS ci ratio: 4.051955e-02	ci left: 3.903030e-03	ci right 4.064868e-03	k: 9321	n:2340000
SLIT1   2340000 perm   3040 sec   (770 perm/sec)   p_kst 3.983333e-03   p_cons 4.981197e-03   p_joint 6.217949e-04

Joint ci ratio: 1.024890e-01	ci left: 5.902372e-04	ci right 6.544080e-04	k: 1461	n:2350000
Cons ci ratio: 3.613456e-02	ci left: 4.892927e-03	ci right 5.073402e-03	k: 11709	n:2350000
KS ci ratio: 4.043940e-02	ci left: 3.902006e-03	ci right 4.063475e-03	k: 9358	n:2350000
SLIT1   2350000 perm   3063 sec   (767 perm/sec)   p_kst 3.982128e-03   p_cons 4.982553e-03   p_joint 6.217021e-04

Joint ci ratio: 1.022445e-01	ci left: 5.906263e-04	ci right 6.546771e-04	k: 1468	n:2360000
Cons ci ratio: 3.607462e-02	ci left: 4.888571e-03	ci right 5.068579e-03	k: 11748	n:2360000
KS ci ratio: 4.034679e-02	ci left: 3.903509e-03	ci right 4.064661e-03	k: 9401	n:2360000
SLIT1   2360000 perm   3086 sec   (765 perm/sec)   p_kst 3.983475e-03   p_cons 4.977966e-03   p_joint 6.220339e-04

Joint ci ratio: 1.020709e-01	ci left: 5.901900e-04	ci right 6.540784e-04	k: 1473	n:2370000
Cons ci ratio: 3.597972e-02	ci left: 4.893869e-03	ci right 5.073589e-03	k: 11810	n:2370000
KS ci ratio: 4.026552e-02	ci left: 3.902910e-03	ci right 4.063706e-03	k: 9439	n:2370000
SLIT1   2370000 perm   3110 sec   (762 perm/sec)   p_kst 3.982700e-03   p_cons 4.983122e-03   p_joint 6.215190e-04

Joint ci ratio: 1.029484e-01	ci left: 5.774752e-04	ci right 6.405569e-04	k: 1448	n:2380000
Cons ci ratio: 3.590380e-02	ci left: 4.894126e-03	ci right 5.073468e-03	k: 11860	n:2380000
KS ci ratio: 4.018687e-02	ci left: 3.901901e-03	ci right 4.062334e-03	k: 9476	n:2380000
SLIT1   2380000 perm   3133 sec   (760 perm/sec)   p_kst 3.981513e-03   p_cons 4.983193e-03   p_joint 6.084034e-04

Joint ci ratio: 1.027359e-01	ci left: 5.775048e-04	ci right 6.404518e-04	k: 1454	n:2390000
Cons ci ratio: 3.584197e-02	ci left: 4.890649e-03	ci right 5.069549e-03	k: 11901	n:2390000
KS ci ratio: 4.008964e-02	ci left: 3.904629e-03	ci right 4.064777e-03	k: 9522	n:2390000
SLIT1   2390000 perm   3156 sec   (757 perm/sec)   p_kst 3.984100e-03   p_cons 4.979498e-03   p_joint 6.083682e-04

Joint ci ratio: 1.025599e-01	ci left: 5.771284e-04	ci right 6.399201e-04	k: 1459	n:2400000
Cons ci ratio: 3.575490e-02	ci left: 4.894222e-03	ci right 5.072809e-03	k: 11959	n:2400000
KS ci ratio: 3.998682e-02	ci left: 3.908572e-03	ci right 4.068461e-03	k: 9571	n:2400000
SLIT1   2400000 perm   3181 sec   (755 perm/sec)   p_kst 3.987917e-03   p_cons 4.982917e-03   p_joint 6.079167e-04

Joint ci ratio: 1.022103e-01	ci left: 5.787768e-04	ci right 6.415204e-04	k: 1469	n:2410000
Cons ci ratio: 3.568637e-02	ci left: 4.892831e-03	ci right 5.071018e-03	k: 12005	n:2410000
KS ci ratio: 3.990353e-02	ci left: 3.908786e-03	ci right 4.068343e-03	k: 9611	n:2410000
SLIT1   2410000 perm   3204 sec   (752 perm/sec)   p_kst 3.987967e-03   p_cons 4.981328e-03   p_joint 6.095436e-04

Joint ci ratio: 1.019678e-01	ci left: 5.792039e-04	ci right 6.418358e-04	k: 1476	n:2420000
Cons ci ratio: 3.559597e-02	ci left: 4.897595e-03	ci right 5.075494e-03	k: 12066	n:2420000
KS ci ratio: 3.980006e-02	ci left: 3.913090e-03	ci right 4.072398e-03	k: 9661	n:2420000
SLIT1   2420000 perm   3228 sec   (750 perm/sec)   p_kst 3.992149e-03   p_cons 4.985950e-03   p_joint 6.099174e-04

Joint ci ratio: 1.037037e-01	ci left: 5.571740e-04	ci right 6.185119e-04	k: 1427	n:2430000
Cons ci ratio: 3.552687e-02	ci left: 4.896609e-03	ci right 5.074121e-03	k: 12113	n:2430000
KS ci ratio: 3.973027e-02	ci left: 3.910839e-03	ci right 4.069771e-03	k: 9695	n:2430000
SLIT1   2430000 perm   3251 sec   (747 perm/sec)   p_kst 3.989712e-03   p_cons 4.984774e-03   p_joint 5.872428e-04

Joint ci ratio: 1.035588e-01	ci left: 5.564873e-04	ci right 6.176588e-04	k: 1431	n:2440000
Cons ci ratio: 3.546550e-02	ci left: 4.893602e-03	ci right 5.070691e-03	k: 12155	n:2440000
KS ci ratio: 3.965061e-02	ci left: 3.910636e-03	ci right 4.069233e-03	k: 9734	n:2440000
SLIT1   2440000 perm   3275 sec   (745 perm/sec)   p_kst 3.989344e-03   p_cons 4.981557e-03   p_joint 5.864754e-04

Joint ci ratio: 1.048489e-01	ci left: 5.403023e-04	ci right 6.004802e-04	k: 1396	n:2450000
Cons ci ratio: 3.538842e-02	ci left: 4.895069e-03	ci right 5.071819e-03	k: 12208	n:2450000
KS ci ratio: 3.958160e-02	ci left: 3.908414e-03	ci right 4.066639e-03	k: 9768	n:2450000
SLIT1   2450000 perm   3300 sec   (742 perm/sec)   p_kst 3.986939e-03   p_cons 4.982857e-03   p_joint 5.697959e-04

Joint ci ratio: 1.046992e-01	ci left: 5.396894e-04	ci right 5.997078e-04	k: 1400	n:2460000
Cons ci ratio: 3.532196e-02	ci left: 4.893704e-03	ci right 5.070066e-03	k: 12254	n:2460000
KS ci ratio: 3.949677e-02	ci left: 3.909431e-03	ci right 4.067350e-03	k: 9810	n:2460000
SLIT1   2460000 perm   3324 sec   (740 perm/sec)   p_kst 3.987805e-03   p_cons 4.981301e-03   p_joint 5.691057e-04

Joint ci ratio: 1.046993e-01	ci left: 5.375044e-04	ci right 5.972799e-04	k: 1400	n:2470000
Cons ci ratio: 3.526165e-02	ci left: 4.890745e-03	ci right 5.066694e-03	k: 12296	n:2470000
KS ci ratio: 3.943861e-02	ci left: 3.905228e-03	ci right 4.062740e-03	k: 9839	n:2470000
SLIT1   2470000 perm   3349 sec   (738 perm/sec)   p_kst 3.983401e-03   p_cons 4.978138e-03   p_joint 5.668016e-04

Joint ci ratio: 1.046247e-01	ci left: 5.361223e-04	ci right 5.956991e-04	k: 1402	n:2480000
Cons ci ratio: 3.519018e-02	ci left: 4.891008e-03	ci right 5.066602e-03	k: 12346	n:2480000
KS ci ratio: 3.935470e-02	ci left: 3.906250e-03	ci right 4.063460e-03	k: 9881	n:2480000
SLIT1   2480000 perm   3373 sec   (735 perm/sec)   p_kst 3.984274e-03   p_cons 4.978226e-03   p_joint 5.653226e-04

Joint ci ratio: 1.043276e-01	ci left: 5.370981e-04	ci right 5.966035e-04	k: 1410	n:2490000
Cons ci ratio: 3.513623e-02	ci left: 4.886492e-03	ci right 5.061650e-03	k: 12384	n:2490000
KS ci ratio: 3.927131e-02	ci left: 3.907264e-03	ci right 4.064174e-03	k: 9923	n:2490000
SLIT1   2490000 perm   3397 sec   (733 perm/sec)   p_kst 3.985141e-03   p_cons 4.973494e-03   p_joint 5.662651e-04

Joint ci ratio: 1.041065e-01	ci left: 5.372872e-04	ci right 5.966796e-04	k: 1416	n:2500000
Cons ci ratio: 3.504711e-02	ci left: 4.891926e-03	ci right 5.066824e-03	k: 12447	n:2500000
KS ci ratio: 3.919438e-02	ci left: 3.907082e-03	ci right 4.063671e-03	k: 9962	n:2500000
SLIT1   2500000 perm   3421 sec   (731 perm/sec)   p_kst 3.984800e-03   p_cons 4.978800e-03   p_joint 5.664000e-04

Joint ci ratio: 1.041434e-01	ci left: 5.347585e-04	ci right 5.938936e-04	k: 1415	n:2510000
Cons ci ratio: 3.497834e-02	ci left: 4.891787e-03	ci right 5.066330e-03	k: 12496	n:2510000
KS ci ratio: 3.911005e-02	ci left: 3.908479e-03	ci right 4.064780e-03	k: 10005	n:2510000
SLIT1   2510000 perm   3445 sec   (729 perm/sec)   p_kst 3.986056e-03   p_cons 4.978486e-03   p_joint 5.637450e-04

Joint ci ratio: 1.039967e-01	ci left: 5.341825e-04	ci right 5.931655e-04	k: 1419	n:2520000
Cons ci ratio: 3.491977e-02	ci left: 4.888896e-03	ci right 5.063038e-03	k: 12538	n:2520000
KS ci ratio: 3.904382e-02	ci left: 3.906330e-03	ci right 4.062274e-03	k: 10039	n:2520000
SLIT1   2520000 perm   3470 sec   (726 perm/sec)   p_kst 3.983730e-03   p_cons 4.975397e-03   p_joint 5.630952e-04

Joint ci ratio: 1.037776e-01	ci left: 5.343810e-04	ci right 5.932541e-04	k: 1425	n:2530000
Cons ci ratio: 3.485453e-02	ci left: 4.887987e-03	ci right 5.061765e-03	k: 12585	n:2530000
KS ci ratio: 3.895463e-02	ci left: 3.908894e-03	ci right 4.064576e-03	k: 10085	n:2530000
SLIT1   2530000 perm   3497 sec   (724 perm/sec)   p_kst 3.986166e-03   p_cons 4.974308e-03   p_joint 5.632411e-04

Joint ci ratio: 1.035600e-01	ci left: 5.345781e-04	ci right 5.933419e-04	k: 1431	n:2540000
Cons ci ratio: 3.477444e-02	ci left: 4.891379e-03	ci right 5.064871e-03	k: 12643	n:2540000
KS ci ratio: 3.888918e-02	ci left: 3.906760e-03	ci right 4.062090e-03	k: 10119	n:2540000
SLIT1   2540000 perm   3524 sec   (721 perm/sec)   p_kst 3.983858e-03   p_cons 4.977559e-03   p_joint 5.633858e-04

Joint ci ratio: 1.033797e-01	ci left: 5.343917e-04	ci right 5.930266e-04	k: 1436	n:2550000
Cons ci ratio: 3.470451e-02	ci left: 4.892024e-03	ci right 5.065182e-03	k: 12694	n:2550000
KS ci ratio: 3.882023e-02	ci left: 3.905420e-03	ci right 4.060415e-03	k: 10155	n:2550000
SLIT1   2550000 perm   3550 sec   (718 perm/sec)   p_kst 3.982353e-03   p_cons 4.978039e-03   p_joint 5.631373e-04

Joint ci ratio: 1.032361e-01	ci left: 5.338264e-04	ci right 5.923130e-04	k: 1440	n:2560000
Cons ci ratio: 3.463090e-02	ci left: 4.893825e-03	ci right 5.066673e-03	k: 12748	n:2560000
KS ci ratio: 3.873256e-02	ci left: 3.907959e-03	ci right 4.062697e-03	k: 10201	n:2560000
SLIT1   2560000 perm   3577 sec   (716 perm/sec)   p_kst 3.984766e-03   p_cons 4.979687e-03   p_joint 5.625000e-04

Joint ci ratio: 1.030932e-01	ci left: 5.332655e-04	ci right 5.916048e-04	k: 1444	n:2570000
Cons ci ratio: 3.456319e-02	ci left: 4.894070e-03	ci right 5.066581e-03	k: 12798	n:2570000
KS ci ratio: 3.866823e-02	ci left: 3.905855e-03	ci right 4.060247e-03	k: 10235	n:2570000
SLIT1   2570000 perm   3602 sec   (714 perm/sec)   p_kst 3.982490e-03   p_cons 4.979767e-03   p_joint 5.618677e-04

Joint ci ratio: 1.027736e-01	ci left: 5.345972e-04	ci right 5.928899e-04	k: 1453	n:2580000
Cons ci ratio: 3.449453e-02	ci left: 4.894698e-03	ci right 5.066882e-03	k: 12849	n:2580000
KS ci ratio: 3.857782e-02	ci left: 3.909141e-03	ci right 4.063294e-03	k: 10283	n:2580000
SLIT1   2580000 perm   3628 sec   (711 perm/sec)   p_kst 3.985659e-03   p_cons 4.980233e-03   p_joint 5.631783e-04

Joint ci ratio: 1.025973e-01	ci left: 5.344140e-04	ci right 5.925808e-04	k: 1458	n:2590000
Cons ci ratio: 3.442761e-02	ci left: 4.894938e-03	ci right 5.066790e-03	k: 12899	n:2590000
KS ci ratio: 3.852550e-02	ci left: 3.904754e-03	ci right 4.058520e-03	k: 10311	n:2590000
SLIT1   2590000 perm   3653 sec   (709 perm/sec)   p_kst 3.981081e-03   p_cons 4.980309e-03   p_joint 5.629344e-04

Joint ci ratio: 1.024570e-01	ci left: 5.338576e-04	ci right 5.918796e-04	k: 1462	n:2600000
Cons ci ratio: 3.437309e-02	ci left: 4.891745e-03	ci right 5.063207e-03	k: 12940	n:2600000
KS ci ratio: 3.843608e-02	ci left: 3.908020e-03	ci right 4.061550e-03	k: 10359	n:2600000
SLIT1   2600000 perm   3679 sec   (707 perm/sec)   p_kst 3.984231e-03   p_cons 4.976923e-03   p_joint 5.623077e-04

Joint ci ratio: 1.022824e-01	ci left: 5.336788e-04	ci right 5.915766e-04	k: 1467	n:2610000
Cons ci ratio: 3.431484e-02	ci left: 4.889716e-03	ci right 5.060811e-03	k: 12984	n:2610000
KS ci ratio: 3.836580e-02	ci left: 3.907466e-03	ci right 4.060687e-03	k: 10397	n:2610000
SLIT1   2610000 perm   3704 sec   (705 perm/sec)   p_kst 3.983525e-03   p_cons 4.974713e-03   p_joint 5.620690e-04

Joint ci ratio: 1.022128e-01	ci left: 5.323857e-04	ci right 5.901015e-04	k: 1469	n:2620000
Cons ci ratio: 3.426614e-02	ci left: 4.885053e-03	ci right 5.055738e-03	k: 13021	n:2620000
KS ci ratio: 3.828669e-02	ci left: 3.908807e-03	ci right 4.061758e-03	k: 10440	n:2620000
SLIT1   2620000 perm   3732 sec   (702 perm/sec)   p_kst 3.984733e-03   p_cons 4.969847e-03   p_joint 5.606870e-04

Joint ci ratio: 1.019703e-01	ci left: 5.329550e-04	ci right 5.905873e-04	k: 1476	n:2630000
Cons ci ratio: 3.419266e-02	ci left: 4.887590e-03	ci right 5.057990e-03	k: 13077	n:2630000
KS ci ratio: 3.819893e-02	ci left: 3.912021e-03	ci right 4.064739e-03	k: 10488	n:2630000
SLIT1   2630000 perm   3758 sec   (700 perm/sec)   p_kst 3.987833e-03   p_cons 4.972243e-03   p_joint 5.612167e-04

Joint ci ratio: 1.024925e-01	ci left: 5.253996e-04	ci right 5.825233e-04	k: 1461	n:2640000
Cons ci ratio: 3.413009e-02	ci left: 4.887103e-03	ci right 5.057168e-03	k: 13125	n:2640000
KS ci ratio: 3.813175e-02	ci left: 3.911085e-03	ci right 4.063492e-03	k: 10525	n:2640000
SLIT1   2640000 perm   3784 sec   (698 perm/sec)   p_kst 3.986742e-03   p_cons 4.971591e-03   p_joint 5.534091e-04

Joint ci ratio: 1.028806e-01	ci left: 5.193726e-04	ci right 5.760677e-04	k: 1450	n:2650000
Cons ci ratio: 3.406787e-02	ci left: 4.886620e-03	ci right 5.056352e-03	k: 13173	n:2650000
KS ci ratio: 3.805408e-02	ci left: 3.912398e-03	ci right 4.064538e-03	k: 10568	n:2650000
SLIT1   2650000 perm   3810 sec   (696 perm/sec)   p_kst 3.987925e-03   p_cons 4.970943e-03   p_joint 5.471698e-04

Joint ci ratio: 1.026333e-01	ci left: 5.199840e-04	ci right 5.766012e-04	k: 1457	n:2660000
Cons ci ratio: 3.400340e-02	ci left: 4.886886e-03	ci right 5.056300e-03	k: 13223	n:2660000
KS ci ratio: 3.800026e-02	ci left: 3.908860e-03	ci right 4.060644e-03	k: 10598	n:2660000
SLIT1   2660000 perm   3836 sec   (694 perm/sec)   p_kst 3.984211e-03   p_cons 4.971053e-03   p_joint 5.477444e-04

Joint ci ratio: 1.037428e-01	ci left: 5.067254e-04	ci right 5.625319e-04	k: 1426	n:2670000
Cons ci ratio: 3.394315e-02	ci left: 4.886036e-03	ci right 5.055115e-03	k: 13270	n:2670000
KS ci ratio: 3.792697e-02	ci left: 3.909430e-03	ci right 4.060937e-03	k: 10639	n:2670000
SLIT1   2670000 perm   3861 sec   (692 perm/sec)   p_kst 3.984644e-03   p_cons 4.970037e-03   p_joint 5.340824e-04

Joint ci ratio: 1.034532e-01	ci left: 5.077424e-04	ci right 5.634952e-04	k: 1434	n:2680000
Cons ci ratio: 3.387172e-02	ci left: 4.888523e-03	ci right 5.057325e-03	k: 13326	n:2680000
KS ci ratio: 3.785765e-02	ci left: 3.909257e-03	ci right 4.060474e-03	k: 10678	n:2680000
SLIT1   2680000 perm   3887 sec   (689 perm/sec)   p_kst 3.984328e-03   p_cons 4.972388e-03   p_joint 5.350746e-04

Joint ci ratio: 1.032375e-01	ci left: 5.080277e-04	ci right 5.636886e-04	k: 1440	n:2690000
Cons ci ratio: 3.379820e-02	ci left: 4.891730e-03	ci right 5.060268e-03	k: 13384	n:2690000
KS ci ratio: 3.777103e-02	ci left: 3.912768e-03	ci right 4.063767e-03	k: 10727	n:2690000
SLIT1   2690000 perm   3914 sec   (687 perm/sec)   p_kst 3.987732e-03   p_cons 4.975465e-03   p_joint 5.353160e-04

Joint ci ratio: 1.030589e-01	ci left: 5.079502e-04	ci right 5.635005e-04	k: 1445	n:2700000
Cons ci ratio: 3.372516e-02	ci left: 4.894912e-03	ci right 5.063189e-03	k: 13442	n:2700000
KS ci ratio: 3.769730e-02	ci left: 3.913685e-03	ci right 4.064419e-03	k: 10769	n:2700000
SLIT1   2700000 perm   3941 sec   (685 perm/sec)   p_kst 3.988519e-03   p_cons 4.978519e-03   p_joint 5.351852e-04

Joint ci ratio: 1.029878e-01	ci left: 5.067949e-04	ci right 5.621782e-04	k: 1447	n:2710000
Cons ci ratio: 3.368144e-02	ci left: 4.889656e-03	ci right 5.057530e-03	k: 13477	n:2710000
KS ci ratio: 3.762924e-02	ci left: 3.913499e-03	ci right 4.063947e-03	k: 10808	n:2710000
SLIT1   2710000 perm   3967 sec   (683 perm/sec)   p_kst 3.988192e-03   p_cons 4.973063e-03   p_joint 5.339483e-04

Joint ci ratio: 1.028458e-01	ci left: 5.063644e-04	ci right 5.616198e-04	k: 1451	n:2720000
Cons ci ratio: 3.362038e-02	ci left: 4.889542e-03	ci right 5.057102e-03	k: 13526	n:2720000
KS ci ratio: 3.756502e-02	ci left: 3.912587e-03	ci right 4.062737e-03	k: 10845	n:2720000
SLIT1   2720000 perm   3995 sec   (681 perm/sec)   p_kst 3.987132e-03   p_cons 4.972794e-03   p_joint 5.334559e-04

Joint ci ratio: 1.027398e-01	ci left: 5.055802e-04	ci right 5.606897e-04	k: 1454	n:2730000
Cons ci ratio: 3.355717e-02	ci left: 4.890156e-03	ci right 5.057416e-03	k: 13577	n:2730000
KS ci ratio: 3.749767e-02	ci left: 3.912406e-03	ci right 4.062275e-03	k: 10884	n:2730000
SLIT1   2730000 perm   4023 sec   (679 perm/sec)   p_kst 3.986813e-03   p_cons 4.973260e-03   p_joint 5.326007e-04

Joint ci ratio: 1.024935e-01	ci left: 5.062242e-04	ci right 5.612637e-04	k: 1461	n:2740000
Cons ci ratio: 3.350544e-02	ci left: 4.887509e-03	ci right 5.054416e-03	k: 13619	n:2740000
KS ci ratio: 3.742896e-02	ci left: 3.912589e-03	ci right 4.062185e-03	k: 10924	n:2740000
SLIT1   2740000 perm   4053 sec   (676 perm/sec)   p_kst 3.986861e-03   p_cons 4.970438e-03   p_joint 5.332117e-04

Joint ci ratio: 1.023536e-01	ci left: 5.058007e-04	ci right 5.607145e-04	k: 1465	n:2750000
Cons ci ratio: 3.343305e-02	ci left: 4.891011e-03	ci right 5.057670e-03	k: 13678	n:2750000
KS ci ratio: 3.737431e-02	ci left: 3.909889e-03	ci right 4.059158e-03	k: 10956	n:2750000
SLIT1   2750000 perm   4080 sec   (674 perm/sec)   p_kst 3.984000e-03   p_cons 4.973818e-03   p_joint 5.327273e-04

Joint ci ratio: 1.021448e-01	ci left: 5.060864e-04	ci right 5.609124e-04	k: 1471	n:2760000
Cons ci ratio: 3.336356e-02	ci left: 4.893770e-03	ci right 5.060170e-03	k: 13735	n:2760000
KS ci ratio: 3.729436e-02	ci left: 3.912593e-03	ci right 4.061639e-03	k: 11003	n:2760000
SLIT1   2760000 perm   4106 sec   (672 perm/sec)   p_kst 3.986594e-03   p_cons 4.976449e-03   p_joint 5.329710e-04

Joint ci ratio: 1.020409e-01	ci left: 5.053147e-04	ci right 5.599981e-04	k: 1474	n:2770000
Cons ci ratio: 3.330908e-02	ci left: 4.892213e-03	ci right 5.058283e-03	k: 13780	n:2770000
KS ci ratio: 3.724031e-02	ci left: 3.909913e-03	ci right 4.058636e-03	k: 11035	n:2770000
SLIT1   2770000 perm   4134 sec   (670 perm/sec)   p_kst 3.983755e-03   p_cons 4.974729e-03   p_joint 5.321300e-04

Joint ci ratio: 1.027756e-01	ci left: 4.961364e-04	ci right 5.502365e-04	k: 1453	n:2780000
Cons ci ratio: 3.324881e-02	ci left: 4.892451e-03	ci right 5.058223e-03	k: 13830	n:2780000
KS ci ratio: 3.718311e-02	ci left: 3.907965e-03	ci right 4.056381e-03	k: 11069	n:2780000
SLIT1   2780000 perm   4160 sec   (668 perm/sec)   p_kst 3.981655e-03   p_cons 4.974820e-03   p_joint 5.226619e-04

Joint ci ratio: 1.026346e-01	ci left: 4.957550e-04	ci right 5.497349e-04	k: 1457	n:2790000
Cons ci ratio: 3.318888e-02	ci left: 4.892688e-03	ci right 5.058163e-03	k: 13880	n:2790000
KS ci ratio: 3.712954e-02	ci left: 3.905321e-03	ci right 4.053418e-03	k: 11101	n:2790000
SLIT1   2790000 perm   4188 sec   (666 perm/sec)   p_kst 3.978853e-03   p_cons 4.974910e-03   p_joint 5.222222e-04

Joint ci ratio: 1.024941e-01	ci left: 4.953764e-04	ci right 5.492367e-04	k: 1461	n:2800000
Cons ci ratio: 3.314241e-02	ci left: 4.889027e-03	ci right 5.054142e-03	k: 13919	n:2800000
KS ci ratio: 3.707954e-02	ci left: 3.901988e-03	ci right 4.049755e-03	k: 11131	n:2800000
SLIT1   2800000 perm   4216 sec   (664 perm/sec)   p_kst 3.975357e-03   p_cons 4.971071e-03   p_joint 5.217857e-04

Joint ci ratio: 1.023892e-01	ci left: 4.946537e-04	ci right 5.483771e-04	k: 1464	n:2810000
Cons ci ratio: 3.308900e-02	ci left: 4.887510e-03	ci right 5.052303e-03	k: 13964	n:2810000
KS ci ratio: 3.700479e-02	ci left: 3.903968e-03	ci right 4.051506e-03	k: 11176	n:2810000
SLIT1   2810000 perm   4243 sec   (662 perm/sec)   p_kst 3.977224e-03   p_cons 4.969395e-03   p_joint 5.209964e-04

Joint ci ratio: 1.021454e-01	ci left: 4.953184e-04	ci right 5.489783e-04	k: 1471	n:2820000
Cons ci ratio: 3.302755e-02	ci left: 4.888466e-03	ci right 5.052979e-03	k: 14016	n:2820000
KS ci ratio: 3.693544e-02	ci left: 3.904880e-03	ci right 4.052170e-03	k: 11218	n:2820000
SLIT1   2820000 perm   4274 sec   (660 perm/sec)   p_kst 3.978014e-03   p_cons 4.970213e-03   p_joint 5.216312e-04

Joint ci ratio: 1.019033e-01	ci left: 4.959786e-04	ci right 5.495750e-04	k: 1478	n:2830000
Cons ci ratio: 3.296763e-02	ci left: 4.889064e-03	ci right 5.053294e-03	k: 14067	n:2830000
KS ci ratio: 3.686977e-02	ci left: 3.905085e-03	ci right 4.052116e-03	k: 11258	n:2830000
SLIT1   2830000 perm   4301 sec   (658 perm/sec)   p_kst 3.978092e-03   p_cons 4.970671e-03   p_joint 5.222615e-04

Joint ci ratio: 1.016630e-01	ci left: 4.966342e-04	ci right 5.501674e-04	k: 1485	n:2840000
Cons ci ratio: 3.290217e-02	ci left: 4.891405e-03	ci right 5.055381e-03	k: 14123	n:2840000
KS ci ratio: 3.681263e-02	ci left: 3.903546e-03	ci right 4.050286e-03	k: 11293	n:2840000
SLIT1   2840000 perm   4329 sec   (656 perm/sec)   p_kst 3.976408e-03   p_cons 4.972887e-03   p_joint 5.228873e-04

Joint ci ratio: 1.014244e-01	ci left: 4.972854e-04	ci right 5.507554e-04	k: 1492	n:2850000
Cons ci ratio: 3.283943e-02	ci left: 4.893034e-03	ci right 5.056746e-03	k: 14177	n:2850000
KS ci ratio: 3.674924e-02	ci left: 3.903407e-03	ci right 4.049884e-03	k: 11332	n:2850000
SLIT1   2850000 perm   4361 sec   (653 perm/sec)   p_kst 3.976140e-03   p_cons 4.974386e-03   p_joint 5.235088e-04

Joint ci ratio: 1.012888e-01	ci left: 4.969098e-04	ci right 5.502638e-04	k: 1496	n:2860000
Cons ci ratio: 3.278515e-02	ci left: 4.892225e-03	ci right 5.055633e-03	k: 14224	n:2860000
KS ci ratio: 3.668294e-02	ci left: 3.903963e-03	ci right 4.050191e-03	k: 11373	n:2860000
SLIT1   2860000 perm   4390 sec   (651 perm/sec)   p_kst 3.976573e-03   p_cons 4.973427e-03   p_joint 5.230769e-04

Joint ci ratio: 1.012213e-01	ci left: 4.958576e-04	ci right 5.490610e-04	k: 1498	n:2870000
Cons ci ratio: 3.273805e-02	ci left: 4.889347e-03	ci right 5.052421e-03	k: 14265	n:2870000
KS ci ratio: 3.663310e-02	ci left: 3.901063e-03	ci right 4.046979e-03	k: 11404	n:2870000
SLIT1   2870000 perm   4420 sec   (649 perm/sec)   p_kst 3.973519e-03   p_cons 4.970383e-03   p_joint 5.219512e-04

Joint ci ratio: 1.009522e-01	ci left: 4.968435e-04	ci right 5.500025e-04	k: 1506	n:2880000
Cons ci ratio: 3.267395e-02	ci left: 4.891656e-03	ci right 5.054481e-03	k: 14321	n:2880000
KS ci ratio: 3.657384e-02	ci left: 3.900247e-03	ci right 4.045892e-03	k: 11441	n:2880000
SLIT1   2880000 perm   4449 sec   (647 perm/sec)   p_kst 3.972569e-03   p_cons 4.972569e-03   p_joint 5.229167e-04

Joint ci ratio: 1.008519e-01	ci left: 4.961362e-04	ci right 5.491636e-04	k: 1509	n:2890000
Cons ci ratio: 3.262391e-02	ci left: 4.889830e-03	ci right 5.052341e-03	k: 14365	n:2890000
KS ci ratio: 3.651966e-02	ci left: 3.898408e-03	ci right 4.043765e-03	k: 11475	n:2890000
SLIT1   2890000 perm   4476 sec   (646 perm/sec)   p_kst 3.970588e-03   p_cons 4.970588e-03   p_joint 5.221453e-04

Joint ci ratio: 1.007186e-01	ci left: 4.957699e-04	ci right 5.486840e-04	k: 1513	n:2900000
Cons ci ratio: 3.256728e-02	ci left: 4.890070e-03	ci right 5.052301e-03	k: 14415	n:2900000
KS ci ratio: 3.646731e-02	ci left: 3.896241e-03	ci right 4.041304e-03	k: 11508	n:2900000
SLIT1   2900000 perm   4506 sec   (644 perm/sec)   p_kst 3.968276e-03   p_cons 4.970690e-03   p_joint 5.217241e-04

Joint ci ratio: 1.007853e-01	ci left: 4.933962e-04	ci right 5.460940e-04	k: 1511	n:2910000
Cons ci ratio: 3.251998e-02	ci left: 4.887581e-03	ci right 5.049489e-03	k: 14457	n:2910000
KS ci ratio: 3.640252e-02	ci left: 3.896813e-03	ci right 4.041634e-03	k: 11549	n:2910000
SLIT1   2910000 perm   4536 sec   (641 perm/sec)   p_kst 3.968729e-03   p_cons 4.968041e-03   p_joint 5.192440e-04

Joint ci ratio: 9.706685e-02	ci left: 5.311185e-04	ci right 5.856333e-04	k: 1629	n:2920000
Cons ci ratio: 3.245490e-02	ci left: 4.890544e-03	ci right 5.052221e-03	k: 14515	n:2920000
KS ci ratio: 3.633807e-02	ci left: 3.897381e-03	ci right 4.041961e-03	k: 11590	n:2920000
SLIT1   2920000 perm   4565 sec   (640 perm/sec)   p_kst 3.969178e-03   p_cons 4.970890e-03   p_joint 5.578767e-04

Outputting figure to mutsig2_images.part000000000162/SLIT1.11_4753_2920000_0.0039692_0.0049709_0.00055788.png
                gene_name: SLIT1
               theta_stop: 0.097 
                    nperm: 2920000 
                     p_ks: 0.0040 
        ci_ks_bounds_left: 0.0039 
       ci_ks_bounds_right: 0.0040 
                   p_cons: 0.0050 
      ci_cons_bounds_left: 0.0049 
     ci_cons_bounds_right: 0.0051 
                  p_joint: 0.00056 
     ci_joint_bounds_left: 0.00053 
    ci_joint_bounds_right: 0.00059 

Current progress: 21 percent done.
SLITRK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.367975e-02	ci left: 2.659681e-01	ci right 2.835633e-01	k: 2747	n:10000
Cons ci ratio: 8.122612e-02	ci left: 1.811711e-01	ci right 1.966105e-01	k: 1888	n:10000
KS ci ratio: 4.037980e-02	ci left: 4.752601e-01	ci right 4.949486e-01	k: 4851	n:10000
SLITRK3   10000 perm   3 sec   (3965 perm/sec)   p_kst 4.851000e-01   p_cons 1.888000e-01   p_joint 2.747000e-01

Outputting figure to mutsig2_images.part000000000162/SLITRK3.11_2938_10000_0.4851_0.1888_0.2747.png
                gene_name: SLITRK3
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 23 percent done.
SMARCA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.972278e-02	ci left: 4.834542e-01	ci right 5.031497e-01	k: 4933	n:10000
Cons ci ratio: 4.873855e-02	ci left: 3.831109e-01	ci right 4.023516e-01	k: 3927	n:10000
KS ci ratio: 4.084326e-02	ci left: 4.695657e-01	ci right 4.892463e-01	k: 4794	n:10000
SMARCA1   10000 perm   3 sec   (3801 perm/sec)   p_kst 4.794000e-01   p_cons 3.927000e-01   p_joint 4.933000e-01

Outputting figure to mutsig2_images.part000000000162/SMARCA1.11_3261_10000_0.4794_0.3927_0.4933.png
                gene_name: SMARCA1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 24 percent done.
SMARCA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.645157e-02	ci left: 6.779086e-01	ci right 6.961823e-01	k: 6871	n:10000
Cons ci ratio: 7.374510e-02	ci left: 2.121107e-01	ci right 2.284526e-01	k: 2202	n:10000
KS ci ratio: 5.107307e-03	ci left: 9.807002e-01	ci right 9.858126e-01	k: 9834	n:10000
SMARCA2   10000 perm   2 sec   (4050 perm/sec)   p_kst 9.834000e-01   p_cons 2.202000e-01   p_joint 6.871000e-01

Outputting figure to mutsig2_images.part000000000162/SMARCA2.10_4905_10000_0.9834_0.2202_0.6871.png
                gene_name: SMARCA2
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 26 percent done.
SMARCAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.425194e-02	ci left: 5.572202e-01	ci right 5.767407e-01	k: 5670	n:10000
Cons ci ratio: 2.823983e-02	ci left: 6.489092e-01	ci right 6.675985e-01	k: 6583	n:10000
KS ci ratio: 4.489509e-02	ci left: 4.227607e-01	ci right 4.422786e-01	k: 4325	n:10000
SMARCAD1   10000 perm   2 sec   (4273 perm/sec)   p_kst 4.325000e-01   p_cons 6.583000e-01   p_joint 5.670000e-01

Outputting figure to mutsig2_images.part000000000162/SMARCAD1.10_3179_10000_0.4325_0.6583_0.567.png
                gene_name: SMARCAD1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 27 percent done.
SMC1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.786419e-02	ci left: 6.549475e-01	ci right 6.735567e-01	k: 6643	n:10000
Cons ci ratio: 2.464460e-02	ci left: 7.077562e-01	ci right 7.255175e-01	k: 7167	n:10000
KS ci ratio: 3.817290e-02	ci left: 5.033509e-01	ci right 5.230414e-01	k: 5132	n:10000
SMC1A   10000 perm   2 sec   (4155 perm/sec)   p_kst 5.132000e-01   p_cons 7.167000e-01   p_joint 6.643000e-01

Outputting figure to mutsig2_images.part000000000162/SMC1A.10_3802_10000_0.5132_0.7167_0.6643.png
                gene_name: SMC1A
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 29 percent done.
SLCO5A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.663624e-02	ci left: 6.748860e-01	ci right 6.932067e-01	k: 6841	n:10000
Cons ci ratio: 1.723077e-02	ci left: 8.307321e-01	ci right 8.452705e-01	k: 8381	n:10000
KS ci ratio: 3.630636e-02	ci left: 5.283689e-01	ci right 5.480089e-01	k: 5382	n:10000
SLCO5A1   10000 perm   2 sec   (4619 perm/sec)   p_kst 5.382000e-01   p_cons 8.381000e-01   p_joint 6.841000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO5A1.9_2583_10000_0.5382_0.8381_0.6841.png
                gene_name: SLCO5A1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 30 percent done.
SLIT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.244374e-01	ci left: 2.627129e-02	ci right 3.300643e-02	k: 295	n:10000
Cons ci ratio: 5.952407e-02	ci left: 2.934065e-01	ci right 3.115087e-01	k: 3024	n:10000
KS ci ratio: 3.541838e-01	ci left: 9.958933e-03	ci right 1.433217e-02	k: 120	n:10000
SLIT3   10000 perm   2 sec   (4192 perm/sec)   p_kst 1.200000e-02   p_cons 3.024000e-01   p_joint 2.950000e-02

Joint ci ratio: 1.191975e-01	ci left: 4.823440e-02	ci right 5.439688e-02	k: 1025	n:20000
Cons ci ratio: 4.147963e-02	ci left: 3.022512e-01	ci right 3.151045e-01	k: 6173	n:20000
KS ci ratio: 2.351824e-01	ci left: 1.208789e-02	ci right 1.535574e-02	k: 273	n:20000
SLIT3   20000 perm   5 sec   (3755 perm/sec)   p_kst 1.365000e-02   p_cons 3.086500e-01   p_joint 5.125000e-02

Joint ci ratio: 1.193079e-01	ci left: 3.265748e-02	ci right 3.683325e-02	k: 1041	n:30000
Cons ci ratio: 3.440171e-02	ci left: 2.968405e-01	ci right 3.072645e-01	k: 9061	n:30000
KS ci ratio: 1.865790e-01	ci left: 1.314601e-02	ci right 1.588252e-02	k: 434	n:30000
SLIT3   30000 perm   8 sec   (3584 perm/sec)   p_kst 1.446667e-02   p_cons 3.020333e-01   p_joint 3.470000e-02

Joint ci ratio: 9.878489e-02	ci left: 3.600098e-02	ci right 3.976649e-02	k: 1514	n:40000
Cons ci ratio: 2.976395e-02	ci left: 2.979507e-01	ci right 3.069780e-01	k: 12098	n:40000
KS ci ratio: 1.669198e-01	ci left: 1.246390e-02	ci right 1.475752e-02	k: 543	n:40000
SLIT3   40000 perm   12 sec   (3462 perm/sec)   p_kst 1.357500e-02   p_cons 3.024500e-01   p_joint 3.785000e-02

Joint ci ratio: 9.883732e-02	ci left: 2.899053e-02	ci right 3.202430e-02	k: 1524	n:50000
Cons ci ratio: 2.658357e-02	ci left: 2.990332e-01	ci right 3.071097e-01	k: 15153	n:50000
KS ci ratio: 1.492980e-01	ci left: 1.258383e-02	ci right 1.463321e-02	k: 679	n:50000
SLIT3   50000 perm   15 sec   (3389 perm/sec)   p_kst 1.358000e-02   p_cons 3.030600e-01   p_joint 3.048000e-02

Joint ci ratio: 7.831446e-02	ci left: 3.851139e-02	ci right 4.166663e-02	k: 2404	n:60000
Cons ci ratio: 2.418510e-02	ci left: 3.008189e-01	ci right 3.082000e-01	k: 18270	n:60000
KS ci ratio: 1.367153e-01	ci left: 1.259186e-02	ci right 1.445563e-02	k: 810	n:60000
SLIT3   60000 perm   18 sec   (3334 perm/sec)   p_kst 1.350000e-02   p_cons 3.045000e-01   p_joint 4.006667e-02

Joint ci ratio: 7.186498e-02	ci left: 3.930431e-02	ci right 4.224820e-02	k: 2853	n:70000
Cons ci ratio: 2.235122e-02	ci left: 3.018466e-01	ci right 3.086838e-01	k: 21368	n:70000
KS ci ratio: 1.239550e-01	ci left: 1.321192e-02	ci right 1.497155e-02	k: 985	n:70000
SLIT3   70000 perm   21 sec   (3273 perm/sec)   p_kst 1.407143e-02   p_cons 3.052571e-01   p_joint 4.075714e-02

Joint ci ratio: 7.188608e-02	ci left: 3.454773e-02	ci right 3.713607e-02	k: 2866	n:80000
Cons ci ratio: 2.094512e-02	ci left: 3.013120e-01	ci right 3.077022e-01	k: 24360	n:80000
KS ci ratio: 1.166792e-01	ci left: 1.310013e-02	ci right 1.473540e-02	k: 1112	n:80000
SLIT3   80000 perm   25 sec   (3219 perm/sec)   p_kst 1.390000e-02   p_cons 3.045000e-01   p_joint 3.582500e-02

Joint ci ratio: 6.989715e-02	ci left: 3.258515e-02	ci right 3.495613e-02	k: 3038	n:90000
Cons ci ratio: 2.011117e-02	ci left: 2.938385e-01	ci right 2.998190e-01	k: 26714	n:90000
KS ci ratio: 1.106862e-01	ci left: 1.298313e-02	ci right 1.451511e-02	k: 1236	n:90000
SLIT3   90000 perm   29 sec   (3099 perm/sec)   p_kst 1.373333e-02   p_cons 2.968222e-01   p_joint 3.375556e-02

Joint ci ratio: 7.261043e-02	ci left: 2.729073e-02	ci right 2.935675e-02	k: 2831	n:100000
Cons ci ratio: 1.907700e-02	ci left: 2.940392e-01	ci right 2.997126e-01	k: 29687	n:100000
KS ci ratio: 1.046764e-01	ci left: 1.310556e-02	ci right 1.456284e-02	k: 1382	n:100000
SLIT3   100000 perm   33 sec   (3032 perm/sec)   p_kst 1.382000e-02   p_cons 2.968700e-01   p_joint 2.831000e-02

Joint ci ratio: 6.820399e-02	ci left: 2.815927e-02	ci right 3.015656e-02	k: 3206	n:110000
Cons ci ratio: 1.820141e-02	ci left: 2.938926e-01	ci right 2.993000e-01	k: 32625	n:110000
KS ci ratio: 1.004193e-01	ci left: 1.297703e-02	ci right 1.435787e-02	k: 1502	n:110000
SLIT3   110000 perm   37 sec   (2976 perm/sec)   p_kst 1.365455e-02   p_cons 2.965909e-01   p_joint 2.914545e-02

Joint ci ratio: 6.734584e-02	ci left: 2.653281e-02	ci right 2.839012e-02	k: 3294	n:120000
Cons ci ratio: 1.743802e-02	ci left: 2.937339e-01	ci right 2.989093e-01	k: 35558	n:120000
KS ci ratio: 9.589653e-02	ci left: 1.307432e-02	ci right 1.439933e-02	k: 1647	n:120000
SLIT3   120000 perm   41 sec   (2930 perm/sec)   p_kst 1.372500e-02   p_cons 2.963167e-01   p_joint 2.745000e-02

Outputting figure to mutsig2_images.part000000000162/SLIT3.9_4716_120000_0.013725_0.29632_0.02745.png
                gene_name: SLIT3
               theta_stop: 0.096 
                    nperm: 120000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.028 

Current progress: 31 percent done.
SLITRK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.974911e-02	ci left: 6.249733e-01	ci right 6.439483e-01	k: 6345	n:10000
KS ci ratio: 5.945788e-03	ci left: 9.745067e-01	ci right 9.804106e-01	k: 9776	n:10000
SLITRK5   10000 perm   2 sec   (4771 perm/sec)   p_kst 9.776000e-01   p_cons 6.345000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLITRK5.9_2881_10000_0.9776_0.6345_1.png
                gene_name: SLITRK5
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
SLK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.581381e-02	ci left: 6.883905e-01	ci right 7.064943e-01	k: 6975	n:10000
Cons ci ratio: 2.750059e-03	ci left: 9.936409e-01	ci right 9.964588e-01	k: 9952	n:10000
KS ci ratio: 4.544803e-02	ci left: 4.167792e-01	ci right 4.362636e-01	k: 4265	n:10000
SLK   10000 perm   2 sec   (4020 perm/sec)   p_kst 4.265000e-01   p_cons 9.952000e-01   p_joint 6.975000e-01

Outputting figure to mutsig2_images.part000000000162/SLK.9_3784_10000_0.4265_0.9952_0.6975.png
                gene_name: SLK
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 34 percent done.
SMAD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.800172e-02	ci left: 6.527333e-01	ci right 6.713722e-01	k: 6621	n:10000
Cons ci ratio: 6.424362e-02	ci left: 2.625040e-01	ci right 2.800294e-01	k: 2712	n:10000
KS ci ratio: 7.194188e-03	ci left: 9.638355e-01	ci right 9.708888e-01	k: 9675	n:10000
SMAD3   10000 perm   2 sec   (5182 perm/sec)   p_kst 9.675000e-01   p_cons 2.712000e-01   p_joint 6.621000e-01

Outputting figure to mutsig2_images.part000000000162/SMAD3.9_1392_10000_0.9675_0.2712_0.6621.png
                gene_name: SMAD3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 36 percent done.
SMARCAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.785795e-02	ci left: 6.550482e-01	ci right 6.736560e-01	k: 6644	n:10000
KS ci ratio: 2.808936e-02	ci left: 6.513244e-01	ci right 6.699820e-01	k: 6607	n:10000
SMARCAL1   10000 perm   2 sec   (5132 perm/sec)   p_kst 6.607000e-01   p_cons 6.644000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SMARCAL1.9_2929_10000_0.6607_0.6644_1.png
                gene_name: SMARCAL1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
SLC9A10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.522390e-02	ci left: 1.379571e-01	ci right 1.518505e-01	k: 1448	n:10000
Cons ci ratio: 6.951078e-03	ci left: 9.660453e-01	ci right 9.728776e-01	k: 9696	n:10000
KS ci ratio: 1.511704e-01	ci left: 5.821938e-02	ci right 6.783712e-02	k: 629	n:10000
SLC9A10   10000 perm   2 sec   (4217 perm/sec)   p_kst 6.290000e-02   p_cons 9.696000e-01   p_joint 1.448000e-01

Joint ci ratio: 7.007247e-02	ci left: 1.305386e-01	ci right 1.400677e-01	k: 2705	n:20000
Cons ci ratio: 4.810889e-03	ci left: 9.683721e-01	ci right 9.730898e-01	k: 19416	n:20000
KS ci ratio: 1.032282e-01	ci left: 6.376824e-02	ci right 7.075821e-02	k: 1344	n:20000
SLC9A10   20000 perm   5 sec   (3826 perm/sec)   p_kst 6.720000e-02   p_cons 9.708000e-01   p_joint 1.352500e-01

Joint ci ratio: 5.630323e-02	ci left: 1.351696e-01	ci right 1.430338e-01	k: 4172	n:30000
Cons ci ratio: 3.956970e-03	ci left: 9.683850e-01	ci right 9.722565e-01	k: 29111	n:30000
KS ci ratio: 8.409629e-02	ci left: 6.468633e-02	ci right 7.039777e-02	k: 2025	n:30000
SLC9A10   30000 perm   8 sec   (3695 perm/sec)   p_kst 6.750000e-02   p_cons 9.703667e-01   p_joint 1.390667e-01

Outputting figure to mutsig2_images.part000000000162/SLC9A10.8_3646_30000_0.0675_0.97037_0.13907.png
                gene_name: SLC9A10
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 39 percent done.
SLCO1B3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.321626e-02	ci left: 4.415122e-01	ci right 4.611162e-01	k: 4513	n:10000
Cons ci ratio: 2.191363e-02	ci left: 7.534265e-01	ci right 7.702207e-01	k: 7619	n:10000
KS ci ratio: 7.825135e-02	ci left: 1.926909e-01	ci right 2.084839e-01	k: 2005	n:10000
SLCO1B3   10000 perm   2 sec   (4812 perm/sec)   p_kst 2.005000e-01   p_cons 7.619000e-01   p_joint 4.513000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO1B3.8_2165_10000_0.2005_0.7619_0.4513.png
                gene_name: SLCO1B3
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 40 percent done.
SLFN11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.734719e-02	ci left: 3.969510e-01	ci right 4.163034e-01	k: 4066	n:10000
Cons ci ratio: 5.311696e-02	ci left: 3.431304e-01	ci right 3.619556e-01	k: 3525	n:10000
KS ci ratio: 4.565297e-02	ci left: 4.145864e-01	ci right 4.340577e-01	k: 4243	n:10000
SLFN11   10000 perm   2 sec   (4924 perm/sec)   p_kst 4.243000e-01   p_cons 3.525000e-01   p_joint 4.066000e-01

Outputting figure to mutsig2_images.part000000000162/SLFN11.8_2722_10000_0.4243_0.3525_0.4066.png
                gene_name: SLFN11
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 41 percent done.
SLITRK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.733862e-02	ci left: 2.445023e-01	ci right 2.616417e-01	k: 2530	n:10000
Cons ci ratio: 1.164983e-01	ci left: 9.574517e-02	ci right 1.076880e-01	k: 1016	n:10000
KS ci ratio: 2.994821e-02	ci left: 6.218575e-01	ci right 6.408660e-01	k: 6314	n:10000
SLITRK4   10000 perm   2 sec   (4128 perm/sec)   p_kst 6.314000e-01   p_cons 1.016000e-01   p_joint 2.530000e-01

Joint ci ratio: 4.796483e-02	ci left: 2.443081e-01	ci right 2.563646e-01	k: 5006	n:20000
Cons ci ratio: 8.366637e-02	ci left: 9.474715e-02	ci right 1.030699e-01	k: 1977	n:20000
KS ci ratio: 2.114801e-02	ci left: 6.253227e-01	ci right 6.387389e-01	k: 12641	n:20000
SLITRK4   20000 perm   5 sec   (3891 perm/sec)   p_kst 6.320500e-01   p_cons 9.885000e-02   p_joint 2.503000e-01

Outputting figure to mutsig2_images.part000000000162/SLITRK4.8_2518_20000_0.63205_0.09885_0.2503.png
                gene_name: SLITRK4
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.095 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 43 percent done.
SLTM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.757927e-02	ci left: 3.074877e-01	ci right 3.258192e-01	k: 3166	n:10000
Cons ci ratio: 5.288510e-02	ci left: 3.451178e-01	ci right 3.639670e-01	k: 3545	n:10000
KS ci ratio: 7.771862e-02	ci left: 1.948582e-01	ci right 2.107153e-01	k: 2027	n:10000
SLTM   10000 perm   2 sec   (4747 perm/sec)   p_kst 2.027000e-01   p_cons 3.545000e-01   p_joint 3.166000e-01

Outputting figure to mutsig2_images.part000000000162/SLTM.8_3189_10000_0.2027_0.3545_0.3166.png
                gene_name: SLTM
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 44 percent done.
SLC8A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.124191e-01	ci left: 1.022739e-01	ci right 1.145552e-01	k: 1083	n:10000
Cons ci ratio: 5.918697e-03	ci left: 9.747193e-01	ci right 9.805979e-01	k: 9778	n:10000
KS ci ratio: 1.416829e-01	ci left: 6.604181e-02	ci right 7.620974e-02	k: 710	n:10000
SLC8A3   10000 perm   2 sec   (4272 perm/sec)   p_kst 7.100000e-02   p_cons 9.778000e-01   p_joint 1.083000e-01

Joint ci ratio: 7.420271e-02	ci left: 1.178879e-01	ci right 1.270222e-01	k: 2448	n:20000
Cons ci ratio: 4.180877e-03	ci left: 9.756623e-01	ci right 9.797972e-01	k: 19556	n:20000
KS ci ratio: 9.962254e-02	ci left: 6.825964e-02	ci right 7.546543e-02	k: 1436	n:20000
SLC8A3   20000 perm   5 sec   (4031 perm/sec)   p_kst 7.180000e-02   p_cons 9.778000e-01   p_joint 1.224000e-01

Outputting figure to mutsig2_images.part000000000162/SLC8A3.7_2923_20000_0.0718_0.9778_0.1224.png
                gene_name: SLC8A3
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 46 percent done.
SLC9A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.409181e-02	ci left: 5.595257e-01	ci right 5.790339e-01	k: 5693	n:10000
Cons ci ratio: 1.836104e-02	ci left: 8.124288e-01	ci right 8.275843e-01	k: 8201	n:10000
KS ci ratio: 4.331236e-02	ci left: 4.404146e-01	ci right 4.600144e-01	k: 4502	n:10000
SLC9A4   10000 perm   2 sec   (4356 perm/sec)   p_kst 4.502000e-01   p_cons 8.201000e-01   p_joint 5.693000e-01

Outputting figure to mutsig2_images.part000000000162/SLC9A4.7_2445_10000_0.4502_0.8201_0.5693.png
                gene_name: SLC9A4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 47 percent done.
SLCO1C1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.778681e-02	ci left: 2.420311e-01	ci right 2.591144e-01	k: 2505	n:10000
Cons ci ratio: 6.901795e-02	ci left: 2.354100e-01	ci right 2.523395e-01	k: 2438	n:10000
KS ci ratio: 7.612086e-02	ci left: 2.015594e-01	ci right 2.176102e-01	k: 2095	n:10000
SLCO1C1   10000 perm   2 sec   (4731 perm/sec)   p_kst 2.095000e-01   p_cons 2.438000e-01   p_joint 2.505000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO1C1.7_2298_10000_0.2095_0.2438_0.2505.png
                gene_name: SLCO1C1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 49 percent done.
SLFN13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.430104e-02	ci left: 3.331960e-01	ci right 3.518958e-01	k: 3425	n:10000
Cons ci ratio: 1.253417e-02	ci left: 9.014466e-01	ci right 9.129149e-01	k: 9073	n:10000
KS ci ratio: 7.628204e-02	ci left: 2.008694e-01	ci right 2.169006e-01	k: 2088	n:10000
SLFN13   10000 perm   2 sec   (4607 perm/sec)   p_kst 2.088000e-01   p_cons 9.073000e-01   p_joint 3.425000e-01

Outputting figure to mutsig2_images.part000000000162/SLFN13.7_2710_10000_0.2088_0.9073_0.3425.png
                gene_name: SLFN13
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 50 percent done.
SLFN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.188344e-02	ci left: 7.539324e-01	ci right 7.707145e-01	k: 7624	n:10000
Cons ci ratio: 4.599094e-02	ci left: 4.109985e-01	ci right 4.304477e-01	k: 4207	n:10000
KS ci ratio: 2.851646e-02	ci left: 6.444822e-01	ci right 6.632281e-01	k: 6539	n:10000
SLFN5   10000 perm   2 sec   (4663 perm/sec)   p_kst 6.539000e-01   p_cons 4.207000e-01   p_joint 7.624000e-01

Outputting figure to mutsig2_images.part000000000162/SLFN5.7_2692_10000_0.6539_0.4207_0.7624.png
                gene_name: SLFN5
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 51 percent done.
SMARCA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
Cons ci ratio: 2.180661e-01	ci left: 2.787955e-02	ci right 3.479702e-02	k: 312	n:10000
KS ci ratio: 1.699685e-01	ci left: 4.619368e-02	ci right 5.487054e-02	k: 504	n:10000
SMARCA4   10000 perm   2 sec   (4012 perm/sec)   p_kst 5.040000e-02   p_cons 3.120000e-02   p_joint 2.130000e-02

Joint ci ratio: 1.925569e-01	ci left: 1.834288e-02	ci right 2.229831e-02	k: 405	n:20000
Cons ci ratio: 1.593999e-01	ci left: 2.700636e-02	ci right 3.173179e-02	k: 586	n:20000
KS ci ratio: 1.243277e-01	ci left: 4.439900e-02	ci right 5.033349e-02	k: 946	n:20000
SMARCA4   20000 perm   6 sec   (3627 perm/sec)   p_kst 4.730000e-02   p_cons 2.930000e-02   p_joint 2.025000e-02

Joint ci ratio: 1.805657e-01	ci left: 1.406885e-02	ci right 1.689278e-02	k: 463	n:30000
Cons ci ratio: 1.286161e-01	ci left: 2.809861e-02	ci right 3.199310e-02	k: 900	n:30000
KS ci ratio: 1.023678e-01	ci left: 4.420966e-02	ci right 4.901197e-02	k: 1397	n:30000
SMARCA4   30000 perm   9 sec   (3473 perm/sec)   p_kst 4.656667e-02   p_cons 3.000000e-02   p_joint 1.543333e-02

Joint ci ratio: 1.077118e-01	ci left: 3.032112e-02	ci right 3.379725e-02	k: 1281	n:40000
Cons ci ratio: 1.130120e-01	ci left: 2.754747e-02	ci right 3.087134e-02	k: 1167	n:40000
KS ci ratio: 8.870341e-02	ci left: 4.448145e-02	ci right 4.863470e-02	k: 1861	n:40000
SMARCA4   40000 perm   12 sec   (3361 perm/sec)   p_kst 4.652500e-02   p_cons 2.917500e-02   p_joint 3.202500e-02

Joint ci ratio: 1.066674e-01	ci left: 2.489541e-02	ci right 2.771995e-02	k: 1314	n:50000
Cons ci ratio: 1.011883e-01	ci left: 2.766358e-02	ci right 3.063143e-02	k: 1456	n:50000
KS ci ratio: 7.893955e-02	ci left: 4.514166e-02	ci right 4.887116e-02	k: 2349	n:50000
SMARCA4   50000 perm   15 sec   (3291 perm/sec)   p_kst 4.698000e-02   p_cons 2.912000e-02   p_joint 2.628000e-02

Joint ci ratio: 1.131338e-01	ci left: 1.850577e-02	ci right 2.074104e-02	k: 1176	n:60000
Cons ci ratio: 9.208492e-02	ci left: 2.796505e-02	ci right 3.068074e-02	k: 1758	n:60000
KS ci ratio: 7.223662e-02	ci left: 4.509086e-02	ci right 4.848649e-02	k: 2806	n:60000
SMARCA4   60000 perm   19 sec   (3232 perm/sec)   p_kst 4.676667e-02   p_cons 2.930000e-02   p_joint 1.960000e-02

Joint ci ratio: 1.010914e-01	ci left: 1.996449e-02	ci right 2.210404e-02	k: 1471	n:70000
Cons ci ratio: 8.506575e-02	ci left: 2.818898e-02	ci right 3.070737e-02	k: 2060	n:70000
KS ci ratio: 6.433081e-02	ci left: 4.874868e-02	ci right 5.200300e-02	k: 3525	n:70000
SMARCA4   70000 perm   22 sec   (3181 perm/sec)   p_kst 5.035714e-02   p_cons 2.942857e-02   p_joint 2.101429e-02

Joint ci ratio: 8.852259e-02	ci left: 2.286487e-02	ci right 2.499484e-02	k: 1913	n:80000
Cons ci ratio: 7.959666e-02	ci left: 2.825253e-02	ci right 3.060676e-02	k: 2353	n:80000
KS ci ratio: 6.011880e-02	ci left: 4.894340e-02	ci right 5.198931e-02	k: 4036	n:80000
SMARCA4   80000 perm   26 sec   (3130 perm/sec)   p_kst 5.045000e-02   p_cons 2.941250e-02   p_joint 2.391250e-02

Outputting figure to mutsig2_images.part000000000162/SMARCA4.7_5189_80000_0.05045_0.029413_0.023912.png
                gene_name: SMARCA4
               theta_stop: 0.089 
                    nperm: 80000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 53 percent done.
SMARCA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.451772e-02	ci left: 5.534115e-01	ci right 5.729516e-01	k: 5632	n:10000
Cons ci ratio: 1.006498e-01	ci left: 1.250322e-01	ci right 1.383831e-01	k: 1316	n:10000
KS ci ratio: 1.122343e-02	ci left: 9.189410e-01	ci right 9.294103e-01	k: 9243	n:10000
SMARCA5   10000 perm   2 sec   (4490 perm/sec)   p_kst 9.243000e-01   p_cons 1.316000e-01   p_joint 5.632000e-01

Joint ci ratio: 2.731480e-02	ci left: 5.003456e-01	ci right 5.142523e-01	k: 10146	n:20000
Cons ci ratio: 7.007247e-02	ci left: 1.305386e-01	ci right 1.400677e-01	k: 2705	n:20000
KS ci ratio: 8.236388e-03	ci left: 9.150304e-01	ci right 9.226473e-01	k: 18378	n:20000
SMARCA5   20000 perm   5 sec   (4054 perm/sec)   p_kst 9.189000e-01   p_cons 1.352500e-01   p_joint 5.073000e-01

Outputting figure to mutsig2_images.part000000000162/SMARCA5.7_3255_20000_0.9189_0.13525_0.5073.png
                gene_name: SMARCA5
               theta_stop: 0.070 
                    nperm: 20000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 54 percent done.
SMC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.432366e-02	ci left: 4.290429e-01	ci right 4.485928e-01	k: 4388	n:10000
Cons ci ratio: 4.784120e-02	ci left: 3.919717e-01	ci right 4.112857e-01	k: 4016	n:10000
KS ci ratio: 4.834243e-02	ci left: 3.869933e-01	ci right 4.062670e-01	k: 3966	n:10000
SMC2   10000 perm   2 sec   (4249 perm/sec)   p_kst 3.966000e-01   p_cons 4.016000e-01   p_joint 4.388000e-01

Outputting figure to mutsig2_images.part000000000162/SMC2.7_3690_10000_0.3966_0.4016_0.4388.png
                gene_name: SMC2
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 56 percent done.
SLC7A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.544741e-02	ci left: 6.944402e-01	ci right 7.124411e-01	k: 7035	n:10000
KS ci ratio: 1.076007e-02	ci left: 9.248228e-01	ci right 9.349250e-01	k: 9300	n:10000
SLC7A9   10000 perm   2 sec   (5509 perm/sec)   p_kst 9.300000e-01   p_cons 7.035000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLC7A9.6_1512_10000_0.93_0.7035_1.png
                gene_name: SLC7A9
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
SLC9A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.290415e-02	ci left: 5.768742e-01	ci right 5.962753e-01	k: 5866	n:10000
Cons ci ratio: 7.056825e-02	ci left: 2.274091e-01	ci right 2.441451e-01	k: 2357	n:10000
KS ci ratio: 2.176266e-02	ci left: 7.559561e-01	ci right 7.726896e-01	k: 7644	n:10000
SLC9A7   10000 perm   2 sec   (4661 perm/sec)   p_kst 7.644000e-01   p_cons 2.357000e-01   p_joint 5.866000e-01

Outputting figure to mutsig2_images.part000000000162/SLC9A7.6_2246_10000_0.7644_0.2357_0.5866.png
                gene_name: SLC9A7
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 59 percent done.
SMC1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.588261e-02	ci left: 1.362914e-01	ci right 1.501172e-01	k: 1431	n:10000
Cons ci ratio: 2.086125e-02	ci left: 7.710409e-01	ci right 7.873961e-01	k: 7793	n:10000
KS ci ratio: 1.932931e-01	ci left: 3.567168e-02	ci right 4.339951e-02	k: 394	n:10000
SMC1B   10000 perm   2 sec   (4479 perm/sec)   p_kst 3.940000e-02   p_cons 7.793000e-01   p_joint 1.431000e-01

Joint ci ratio: 8.383109e-02	ci left: 9.440373e-02	ci right 1.027134e-01	k: 1970	n:20000
Cons ci ratio: 1.472531e-02	ci left: 7.740925e-01	ci right 7.856260e-01	k: 15598	n:20000
KS ci ratio: 1.392719e-01	ci left: 3.544087e-02	ci right 4.079449e-02	k: 761	n:20000
SMC1B   20000 perm   5 sec   (3995 perm/sec)   p_kst 3.805000e-02   p_cons 7.799000e-01   p_joint 9.850000e-02

Joint ci ratio: 6.773257e-02	ci left: 9.702136e-02	ci right 1.038562e-01	k: 3012	n:30000
Cons ci ratio: 1.207332e-02	ci left: 7.737239e-01	ci right 7.831554e-01	k: 23354	n:30000
KS ci ratio: 1.159489e-01	ci left: 3.456824e-02	ci right 3.885541e-02	k: 1100	n:30000
SMC1B   30000 perm   8 sec   (3830 perm/sec)   p_kst 3.666667e-02   p_cons 7.784667e-01   p_joint 1.004000e-01

Joint ci ratio: 6.436827e-02	ci left: 8.211227e-02	ci right 8.759817e-02	k: 3393	n:40000
Cons ci ratio: 1.023169e-02	ci left: 7.817966e-01	ci right 7.898618e-01	k: 31434	n:40000
KS ci ratio: 1.013140e-01	ci left: 3.424442e-02	ci right 3.792333e-02	k: 1442	n:40000
SMC1B   40000 perm   11 sec   (3730 perm/sec)   p_kst 3.605000e-02   p_cons 7.858500e-01   p_joint 8.482500e-02

Joint ci ratio: 5.748776e-02	ci left: 8.262889e-02	ci right 8.753940e-02	k: 4253	n:50000
Cons ci ratio: 9.190361e-03	ci left: 7.807891e-01	ci right 7.880179e-01	k: 39221	n:50000
KS ci ratio: 8.767859e-02	ci left: 3.675210e-02	ci right 4.014176e-02	k: 1921	n:50000
SMC1B   50000 perm   14 sec   (3648 perm/sec)   p_kst 3.842000e-02   p_cons 7.844200e-01   p_joint 8.506000e-02

Outputting figure to mutsig2_images.part000000000162/SMC1B.6_3808_50000_0.03842_0.78442_0.08506.png
                gene_name: SMC1B
               theta_stop: 0.088 
                    nperm: 50000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.088 

Current progress: 60 percent done.
SMC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.062465e-02	ci left: 7.749918e-01	ci right 7.912430e-01	k: 7832	n:10000
Cons ci ratio: 5.593140e-02	ci left: 3.200898e-01	ci right 3.386097e-01	k: 3293	n:10000
KS ci ratio: 1.607365e-02	ci left: 8.490671e-01	ci right 8.629248e-01	k: 8561	n:10000
SMC5   10000 perm   2 sec   (4412 perm/sec)   p_kst 8.561000e-01   p_cons 3.293000e-01   p_joint 7.832000e-01

Outputting figure to mutsig2_images.part000000000162/SMC5.6_3406_10000_0.8561_0.3293_0.7832.png
                gene_name: SMC5
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 61 percent done.
SLC7A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.909237e-02	ci left: 4.914510e-01	ci right 5.111482e-01	k: 5013	n:10000
Cons ci ratio: 2.368207e-02	ci left: 7.238082e-01	ci right 7.412561e-01	k: 7326	n:10000
KS ci ratio: 5.111871e-02	ci left: 3.607251e-01	ci right 3.797506e-01	k: 3702	n:10000
SLC7A3   10000 perm   2 sec   (5721 perm/sec)   p_kst 3.702000e-01   p_cons 7.326000e-01   p_joint 5.013000e-01

Outputting figure to mutsig2_images.part000000000162/SLC7A3.5_1904_10000_0.3702_0.7326_0.5013.png
                gene_name: SLC7A3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 63 percent done.
SLC9A6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.197598e-02	ci left: 1.784159e-01	ci right 1.937674e-01	k: 1860	n:10000
Cons ci ratio: 1.249484e-01	ci left: 8.397514e-02	ci right 9.526525e-02	k: 895	n:10000
KS ci ratio: 7.128045e-02	ci left: 2.238545e-01	ci right 2.405018e-01	k: 2321	n:10000
SLC9A6   10000 perm   2 sec   (5530 perm/sec)   p_kst 2.321000e-01   p_cons 8.950000e-02   p_joint 1.860000e-01

Joint ci ratio: 5.808162e-02	ci left: 1.800845e-01	ci right 1.909071e-01	k: 3709	n:20000
Cons ci ratio: 8.681902e-02	ci left: 8.847004e-02	ci right 9.654888e-02	k: 1849	n:20000
KS ci ratio: 5.066631e-02	ci left: 2.244795e-01	ci right 2.361990e-01	k: 4606	n:20000
SLC9A6   20000 perm   4 sec   (4920 perm/sec)   p_kst 2.303000e-01   p_cons 9.245000e-02   p_joint 1.854500e-01

Outputting figure to mutsig2_images.part000000000162/SLC9A6.5_2170_20000_0.2303_0.09245_0.18545.png
                gene_name: SLC9A6
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.092 
      ci_cons_bounds_left: 0.088 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 64 percent done.
SLCO1A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.912367e-02	ci left: 6.348262e-01	ci right 6.536897e-01	k: 6443	n:10000
KS ci ratio: 2.906652e-02	ci left: 6.357313e-01	ci right 6.545841e-01	k: 6452	n:10000
SLCO1A2   10000 perm   2 sec   (5163 perm/sec)   p_kst 6.452000e-01   p_cons 6.443000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLCO1A2.5_2069_10000_0.6452_0.6443_1.png
                gene_name: SLCO1A2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
SLCO2B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.271018e-02	ci left: 7.400768e-01	ci right 7.571782e-01	k: 7487	n:10000
KS ci ratio: 1.161133e-02	ci left: 9.138916e-01	ci right 9.246627e-01	k: 9194	n:10000
SLCO2B1   10000 perm   2 sec   (5575 perm/sec)   p_kst 9.194000e-01   p_cons 7.487000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLCO2B1.5_2186_10000_0.9194_0.7487_1.png
                gene_name: SLCO2B1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
SMAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.231239e-02	ci left: 3.500871e-01	ci right 3.689948e-01	k: 3595	n:10000
Cons ci ratio: 7.017888e-02	ci left: 2.293843e-01	ci right 2.461688e-01	k: 2377	n:10000
KS ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
SMAP2   10000 perm   2 sec   (5217 perm/sec)   p_kst 2.869000e-01   p_cons 2.377000e-01   p_joint 3.595000e-01

Outputting figure to mutsig2_images.part000000000162/SMAP2.5_1330_10000_0.2869_0.2377_0.3595.png
                gene_name: SMAP2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 69 percent done.
SMARCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.664856e-02	ci left: 6.746845e-01	ci right 6.930083e-01	k: 6839	n:10000
Cons ci ratio: 1.783640e-02	ci left: 8.209666e-01	ci right 8.358415e-01	k: 8285	n:10000
KS ci ratio: 3.470749e-02	ci left: 5.507057e-01	ci right 5.702590e-01	k: 5605	n:10000
SMARCD1   10000 perm   2 sec   (4927 perm/sec)   p_kst 5.605000e-01   p_cons 8.285000e-01   p_joint 6.839000e-01

Outputting figure to mutsig2_images.part000000000162/SMARCD1.5_1600_10000_0.5605_0.8285_0.6839.png
                gene_name: SMARCD1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 70 percent done.
SLC7A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.000817e-01	ci left: 1.263042e-01	ci right 1.397104e-01	k: 1329	n:10000
Cons ci ratio: 8.088317e-02	ci left: 1.824506e-01	ci right 1.979303e-01	k: 1901	n:10000
KS ci ratio: 1.089014e-01	ci left: 1.084196e-01	ci right 1.210058e-01	k: 1146	n:10000
SLC7A8   10000 perm   2 sec   (5491 perm/sec)   p_kst 1.146000e-01   p_cons 1.901000e-01   p_joint 1.329000e-01

Joint ci ratio: 6.106238e-02	ci left: 1.656075e-01	ci right 1.760884e-01	k: 3416	n:20000
Cons ci ratio: 5.992362e-02	ci left: 1.709422e-01	ci right 1.815521e-01	k: 3524	n:20000
KS ci ratio: 7.451510e-02	ci left: 1.170024e-01	ci right 1.261079e-01	k: 2430	n:20000
SLC7A8   20000 perm   4 sec   (4859 perm/sec)   p_kst 1.215000e-01   p_cons 1.762000e-01   p_joint 1.708000e-01

Outputting figure to mutsig2_images.part000000000162/SLC7A8.4_1652_20000_0.1215_0.1762_0.1708.png
                gene_name: SLC7A8
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 71 percent done.
SLC8A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.432331e-02	ci left: 7.131053e-01	ci right 7.307652e-01	k: 7220	n:10000
Cons ci ratio: 3.716947e-02	ci left: 5.166574e-01	ci right 5.363271e-01	k: 5265	n:10000
KS ci ratio: 2.895237e-02	ci left: 6.375415e-01	ci right 6.563728e-01	k: 6470	n:10000
SLC8A2   10000 perm   2 sec   (5000 perm/sec)   p_kst 6.470000e-01   p_cons 5.265000e-01   p_joint 7.220000e-01

Outputting figure to mutsig2_images.part000000000162/SLC8A2.4_2802_10000_0.647_0.5265_0.722.png
                gene_name: SLC8A2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 73 percent done.
SLC9A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.785170e-02	ci left: 6.551489e-01	ci right 6.737553e-01	k: 6645	n:10000
Cons ci ratio: 5.431310e-02	ci left: 3.330967e-01	ci right 3.517951e-01	k: 3424	n:10000
KS ci ratio: 1.587099e-02	ci left: 8.522284e-01	ci right 8.659617e-01	k: 8592	n:10000
SLC9A1   10000 perm   2 sec   (5340 perm/sec)   p_kst 8.592000e-01   p_cons 3.424000e-01   p_joint 6.645000e-01

Outputting figure to mutsig2_images.part000000000162/SLC9A1.4_2496_10000_0.8592_0.3424_0.6645.png
                gene_name: SLC9A1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 74 percent done.
SLU7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.847961e-02	ci left: 4.993504e-01	ci right 5.190443e-01	k: 5092	n:10000
Cons ci ratio: 1.435501e-02	ci left: 8.753109e-01	ci right 8.880658e-01	k: 8818	n:10000
KS ci ratio: 5.698598e-02	ci left: 3.119521e-01	ci right 3.303522e-01	k: 3211	n:10000
SLU7   10000 perm   2 sec   (5438 perm/sec)   p_kst 3.211000e-01   p_cons 8.818000e-01   p_joint 5.092000e-01

Outputting figure to mutsig2_images.part000000000162/SLU7.4_1821_10000_0.3211_0.8818_0.5092.png
                gene_name: SLU7
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 76 percent done.
SLC9A3R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.433170e-01	ci left: 6.459169e-02	ci right 7.466078e-02	k: 695	n:10000
Cons ci ratio: 2.887085e-01	ci left: 1.548531e-02	ci right 2.080068e-02	k: 180	n:10000
KS ci ratio: 3.989796e-02	ci left: 4.812555e-01	ci right 5.009497e-01	k: 4911	n:10000
SLC9A3R1   10000 perm   2 sec   (5991 perm/sec)   p_kst 4.911000e-01   p_cons 1.800000e-02   p_joint 6.950000e-02

Joint ci ratio: 7.653606e-02	ci left: 1.114947e-01	ci right 1.204173e-01	k: 2318	n:20000
Cons ci ratio: 1.997038e-01	ci left: 1.701043e-02	ci right 2.083125e-02	k: 377	n:20000
KS ci ratio: 2.811288e-02	ci left: 4.859476e-01	ci right 4.998544e-01	k: 9858	n:20000
SLC9A3R1   20000 perm   4 sec   (5280 perm/sec)   p_kst 4.929000e-01   p_cons 1.885000e-02   p_joint 1.159000e-01

Joint ci ratio: 7.266175e-02	ci left: 8.521100e-02	ci right 9.166896e-02	k: 2652	n:30000
Cons ci ratio: 1.602024e-01	ci left: 1.799732e-02	ci right 2.116335e-02	k: 586	n:30000
KS ci ratio: 2.306358e-02	ci left: 4.848609e-01	ci right 4.962076e-01	k: 14716	n:30000
SLC9A3R1   30000 perm   6 sec   (4995 perm/sec)   p_kst 4.905333e-01   p_cons 1.953333e-02   p_joint 8.840000e-02

Joint ci ratio: 6.746813e-02	ci left: 7.519327e-02	ci right 8.046821e-02	k: 3112	n:40000
Cons ci ratio: 1.381708e-01	ci left: 1.836060e-02	ci right 2.110975e-02	k: 788	n:40000
KS ci ratio: 2.006035e-02	ci left: 4.834649e-01	ci right 4.932868e-01	k: 19535	n:40000
SLC9A3R1   40000 perm   8 sec   (4812 perm/sec)   p_kst 4.883750e-01   p_cons 1.970000e-02   p_joint 7.780000e-02

Joint ci ratio: 6.078914e-02	ci left: 7.444123e-02	ci right 7.912805e-02	k: 3838	n:50000
Cons ci ratio: 1.229654e-01	ci left: 1.869381e-02	ci right 2.116237e-02	k: 995	n:50000
KS ci ratio: 1.790590e-02	ci left: 4.850091e-01	ci right 4.937921e-01	k: 24470	n:50000
SLC9A3R1   50000 perm   11 sec   (4678 perm/sec)   p_kst 4.894000e-01   p_cons 1.990000e-02   p_joint 7.676000e-02

Joint ci ratio: 4.999177e-02	ci left: 9.062157e-02	ci right 9.528455e-02	k: 5576	n:60000
Cons ci ratio: 1.127921e-01	ci left: 1.861920e-02	ci right 2.086093e-02	k: 1183	n:60000
KS ci ratio: 1.576625e-02	ci left: 5.034411e-01	ci right 5.114582e-01	k: 30447	n:60000
SLC9A3R1   60000 perm   13 sec   (4546 perm/sec)   p_kst 5.074500e-01   p_cons 1.971667e-02   p_joint 9.293333e-02

Joint ci ratio: 4.656604e-02	ci left: 8.978389e-02	ci right 9.407858e-02	k: 6434	n:70000
Cons ci ratio: 1.042459e-01	ci left: 1.876686e-02	ci right 2.084465e-02	k: 1385	n:70000
KS ci ratio: 1.457779e-02	ci left: 5.043891e-01	ci right 5.118102e-01	k: 35567	n:70000
SLC9A3R1   70000 perm   16 sec   (4449 perm/sec)   p_kst 5.081000e-01   p_cons 1.978571e-02   p_joint 9.191429e-02

Joint ci ratio: 4.009051e-02	ci left: 1.046058e-01	ci right 1.088977e-01	k: 8539	n:80000
Cons ci ratio: 9.726288e-02	ci left: 1.893123e-02	ci right 2.087880e-02	k: 1591	n:80000
KS ci ratio: 1.365371e-02	ci left: 5.039917e-01	ci right 5.109328e-01	k: 40597	n:80000
SLC9A3R1   80000 perm   18 sec   (4361 perm/sec)   p_kst 5.074625e-01   p_cons 1.988750e-02   p_joint 1.067375e-01

Outputting figure to mutsig2_images.part000000000162/SLC9A3R1.3_1101_80000_0.50746_0.019887_0.10674.png
                gene_name: SLC9A3R1
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 77 percent done.
SLC9A8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.743559e-02	ci left: 3.960547e-01	ci right 4.154003e-01	k: 4057	n:10000
KS ci ratio: 1.896174e-02	ci left: 8.025773e-01	ci right 8.180415e-01	k: 8104	n:10000
SLC9A8   10000 perm   2 sec   (6284 perm/sec)   p_kst 8.104000e-01   p_cons 4.057000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLC9A8.3_1810_10000_0.8104_0.4057_1.png
                gene_name: SLC9A8
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
SLCO2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.712230e-02	ci left: 3.992419e-01	ci right 4.186112e-01	k: 4089	n:10000
Cons ci ratio: 3.099272e-02	ci left: 6.056818e-01	ci right 6.248510e-01	k: 6153	n:10000
KS ci ratio: 7.874268e-02	ci left: 1.907209e-01	ci right 2.064550e-01	k: 1985	n:10000
SLCO2A1   10000 perm   2 sec   (5731 perm/sec)   p_kst 1.985000e-01   p_cons 6.153000e-01   p_joint 4.089000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO2A1.3_1988_10000_0.1985_0.6153_0.4089.png
                gene_name: SLCO2A1
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 80 percent done.
SLCO3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.438752e-02	ci left: 1.401132e-01	ci right 1.540931e-01	k: 1470	n:10000
Cons ci ratio: 5.266631e-02	ci left: 3.470060e-01	ci right 3.658777e-01	k: 3564	n:10000
KS ci ratio: 1.303765e-01	ci left: 7.747081e-02	ci right 8.837361e-02	k: 828	n:10000
SLCO3A1   10000 perm   2 sec   (5436 perm/sec)   p_kst 8.280000e-02   p_cons 3.564000e-01   p_joint 1.470000e-01

Joint ci ratio: 6.862754e-02	ci left: 1.354158e-01	ci right 1.450891e-01	k: 2804	n:20000
Cons ci ratio: 3.754283e-02	ci left: 3.461246e-01	ci right 3.594182e-01	k: 7055	n:20000
KS ci ratio: 9.352068e-02	ci left: 7.696131e-02	ci right 8.456110e-02	k: 1614	n:20000
SLCO3A1   20000 perm   4 sec   (4776 perm/sec)   p_kst 8.070000e-02   p_cons 3.527500e-01   p_joint 1.402000e-01

Outputting figure to mutsig2_images.part000000000162/SLCO3A1.3_2260_20000_0.0807_0.35275_0.1402.png
                gene_name: SLCO3A1
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 81 percent done.
SLFN12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.494759e-02	ci left: 5.472988e-01	ci right 5.668679e-01	k: 5571	n:10000
KS ci ratio: 1.738916e-02	ci left: 8.281881e-01	ci right 8.428159e-01	k: 8356	n:10000
SLFN12   10000 perm   2 sec   (5652 perm/sec)   p_kst 8.356000e-01   p_cons 5.571000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLFN12.3_1749_10000_0.8356_0.5571_1.png
                gene_name: SLFN12
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
SMAD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.672327e-02	ci left: 1.989967e-01	ci right 2.149743e-01	k: 2069	n:10000
KS ci ratio: 1.717997e-02	ci left: 8.315462e-01	ci right 8.460558e-01	k: 8389	n:10000
SMAD9   10000 perm   2 sec   (5890 perm/sec)   p_kst 8.389000e-01   p_cons 2.069000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SMAD9.3_1428_10000_0.8389_0.2069_1.png
                gene_name: SMAD9
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
SMARCB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.591556e-02	ci left: 4.117958e-01	ci right 4.312500e-01	k: 4215	n:10000
Cons ci ratio: 1.114414e-01	ci left: 1.039317e-01	ci right 1.162965e-01	k: 1100	n:10000
KS ci ratio: 2.391178e-02	ci left: 7.199706e-01	ci right 7.374960e-01	k: 7288	n:10000
SMARCB1   10000 perm   2 sec   (5962 perm/sec)   p_kst 7.288000e-01   p_cons 1.100000e-01   p_joint 4.215000e-01

Joint ci ratio: 3.153273e-02	ci left: 4.289625e-01	ci right 4.427562e-01	k: 8717	n:20000
Cons ci ratio: 7.806738e-02	ci left: 1.075627e-01	ci right 1.163505e-01	k: 2238	n:20000
KS ci ratio: 1.694055e-02	ci left: 7.218254e-01	ci right 7.342083e-01	k: 14561	n:20000
SMARCB1   20000 perm   4 sec   (5216 perm/sec)   p_kst 7.280500e-01   p_cons 1.119000e-01   p_joint 4.358500e-01

Outputting figure to mutsig2_images.part000000000162/SMARCB1.3_1194_20000_0.72805_0.1119_0.43585.png
                gene_name: SMARCB1
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 86 percent done.
SMARCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.215674e-02	ci left: 5.880118e-01	ci right 6.073313e-01	k: 5977	n:10000
Cons ci ratio: 5.752610e-02	ci left: 3.078845e-01	ci right 3.262222e-01	k: 3170	n:10000
KS ci ratio: 2.148471e-02	ci left: 7.606116e-01	ci right 7.772314e-01	k: 7690	n:10000
SMARCC1   10000 perm   2 sec   (5035 perm/sec)   p_kst 7.690000e-01   p_cons 3.170000e-01   p_joint 5.977000e-01

Outputting figure to mutsig2_images.part000000000162/SMARCC1.3_3430_10000_0.769_0.317_0.5977.png
                gene_name: SMARCC1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 87 percent done.
SMARCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.338745e-02	ci left: 8.894412e-01	ci right 9.015273e-01	k: 8956	n:10000
KS ci ratio: 3.153199e-02	ci left: 5.974476e-01	ci right 6.166900e-01	k: 6071	n:10000
SMARCC2   10000 perm   2 sec   (4544 perm/sec)   p_kst 6.071000e-01   p_cons 8.956000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SMARCC2.3_3854_10000_0.6071_0.8956_1.png
                gene_name: SMARCC2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
SMARCD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.054030e-01	ci left: 1.150598e-01	ci right 1.279615e-01	k: 1214	n:10000
Cons ci ratio: 3.035655e-01	ci left: 1.390981e-02	ci right 1.897755e-02	k: 163	n:10000
KS ci ratio: 6.348859e-02	ci left: 2.671559e-01	ci right 2.847748e-01	k: 2759	n:10000
SMARCD3   10000 perm   2 sec   (6489 perm/sec)   p_kst 2.759000e-01   p_cons 1.630000e-02   p_joint 1.214000e-01

Joint ci ratio: 1.007603e-01	ci left: 6.679456e-02	ci right 7.393096e-02	k: 1406	n:20000
Cons ci ratio: 2.079889e-01	ci left: 1.563326e-02	ci right 1.930895e-02	k: 348	n:20000
KS ci ratio: 4.468658e-02	ci left: 2.716000e-01	ci right 2.840647e-01	k: 5556	n:20000
SMARCD3   20000 perm   4 sec   (5597 perm/sec)   p_kst 2.778000e-01   p_cons 1.740000e-02   p_joint 7.030000e-02

Joint ci ratio: 8.380829e-02	ci left: 6.511118e-02	ci right 7.083950e-02	k: 2038	n:30000
Cons ci ratio: 1.710751e-01	ci left: 1.572706e-02	ci right 1.870083e-02	k: 515	n:30000
KS ci ratio: 3.682124e-02	ci left: 2.691241e-01	ci right 2.792530e-01	k: 8225	n:30000
SMARCD3   30000 perm   6 sec   (5293 perm/sec)   p_kst 2.741667e-01   p_cons 1.716667e-02   p_joint 6.793333e-02

Joint ci ratio: 9.739023e-02	ci left: 3.702618e-02	ci right 4.084113e-02	k: 1556	n:40000
Cons ci ratio: 1.477196e-01	ci left: 1.602077e-02	ci right 1.859998e-02	k: 691	n:40000
KS ci ratio: 3.206332e-02	ci left: 2.676434e-01	ci right 2.763898e-01	k: 10880	n:40000
SMARCD3   40000 perm   8 sec   (5092 perm/sec)   p_kst 2.720000e-01   p_cons 1.727500e-02   p_joint 3.890000e-02

Joint ci ratio: 5.889094e-02	ci left: 7.899778e-02	ci right 8.381095e-02	k: 4069	n:50000
Cons ci ratio: 1.319696e-01	ci left: 1.619457e-02	ci right 1.850196e-02	k: 866	n:50000
KS ci ratio: 2.871494e-02	ci left: 2.676052e-01	ci right 2.754214e-01	k: 13575	n:50000
SMARCD3   50000 perm   10 sec   (4934 perm/sec)   p_kst 2.715000e-01   p_cons 1.732000e-02   p_joint 8.138000e-02

Joint ci ratio: 6.288849e-02	ci left: 5.890088e-02	ci right 6.274174e-02	k: 3648	n:60000
Cons ci ratio: 1.202599e-01	ci left: 1.635263e-02	ci right 1.846108e-02	k: 1043	n:60000
KS ci ratio: 2.618899e-02	ci left: 2.683094e-01	ci right 2.754460e-01	k: 16312	n:60000
SMARCD3   60000 perm   12 sec   (4801 perm/sec)   p_kst 2.718667e-01   p_cons 1.738333e-02   p_joint 6.080000e-02

Joint ci ratio: 5.886786e-02	ci left: 5.781508e-02	ci right 6.133582e-02	k: 4169	n:70000
Cons ci ratio: 1.129058e-01	ci left: 1.597195e-02	ci right 1.789697e-02	k: 1184	n:70000
KS ci ratio: 2.428032e-02	ci left: 2.680228e-01	ci right 2.746247e-01	k: 18992	n:70000
SMARCD3   70000 perm   15 sec   (4684 perm/sec)   p_kst 2.713143e-01   p_cons 1.691429e-02   p_joint 5.955714e-02

Joint ci ratio: 4.887482e-02	ci left: 7.260312e-02	ci right 7.625282e-02	k: 5953	n:80000
Cons ci ratio: 1.051914e-01	ci left: 1.616422e-02	ci right 1.797105e-02	k: 1364	n:80000
KS ci ratio: 2.272027e-02	ci left: 2.680965e-01	ci right 2.742701e-01	k: 21694	n:80000
SMARCD3   80000 perm   17 sec   (4577 perm/sec)   p_kst 2.711750e-01   p_cons 1.705000e-02   p_joint 7.441250e-02

Joint ci ratio: 4.496596e-02	ci left: 7.611309e-02	ci right 7.962529e-02	k: 7007	n:90000
Cons ci ratio: 9.952630e-02	ci left: 1.610045e-02	ci right 1.779756e-02	k: 1524	n:90000
KS ci ratio: 2.142201e-02	ci left: 2.682530e-01	ci right 2.740728e-01	k: 24404	n:90000
SMARCD3   90000 perm   20 sec   (4459 perm/sec)   p_kst 2.711556e-01   p_cons 1.693333e-02   p_joint 7.785556e-02

Outputting figure to mutsig2_images.part000000000162/SMARCD3.3_1547_90000_0.27116_0.016933_0.077856.png
                gene_name: SMARCD3
               theta_stop: 0.100 
                    nperm: 90000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.080 

Current progress: 90 percent done.
SMC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.977892e-02	ci left: 2.916223e-01	ci right 3.096939e-01	k: 3006	n:10000
Cons ci ratio: 5.009327e-02	ci left: 3.701742e-01	ci right 3.892959e-01	k: 3797	n:10000
KS ci ratio: 6.421114e-02	ci left: 2.627020e-01	ci right 2.802313e-01	k: 2714	n:10000
SMC3   10000 perm   2 sec   (4800 perm/sec)   p_kst 2.714000e-01   p_cons 3.797000e-01   p_joint 3.006000e-01

Outputting figure to mutsig2_images.part000000000162/SMC3.3_3770_10000_0.2714_0.3797_0.3006.png
                gene_name: SMC3
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 91 percent done.
SLC9A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.216718e-02	ci left: 4.536882e-01	ci right 4.733331e-01	k: 4635	n:10000
Cons ci ratio: 8.686029e-02	ci left: 1.618004e-01	ci right 1.765928e-01	k: 1691	n:10000
KS ci ratio: 5.199590e-02	ci left: 3.528704e-01	ci right 3.718099e-01	k: 3623	n:10000
SLC9A2   10000 perm   2 sec   (5612 perm/sec)   p_kst 3.623000e-01   p_cons 1.691000e-01   p_joint 4.635000e-01

Outputting figure to mutsig2_images.part000000000162/SLC9A2.2_2487_10000_0.3623_0.1691_0.4635.png
                gene_name: SLC9A2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 93 percent done.
SLC9A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.974911e-02	ci left: 6.249733e-01	ci right 6.439483e-01	k: 6345	n:10000
KS ci ratio: 5.109680e-02	ci left: 3.609240e-01	ci right 3.799515e-01	k: 3704	n:10000
SLC9A3   10000 perm   2 sec   (5565 perm/sec)   p_kst 3.704000e-01   p_cons 6.345000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SLC9A3.2_2573_10000_0.3704_0.6345_1.png
                gene_name: SLC9A3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
SLC9A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.311543e-01	ci left: 7.659787e-02	ci right 8.744709e-02	k: 819	n:10000
Cons ci ratio: 1.763111e-01	ci left: 4.293441e-02	ci right 5.133194e-02	k: 470	n:10000
KS ci ratio: 1.562625e-01	ci left: 5.455711e-02	ci right 6.390171e-02	k: 591	n:10000
SLC9A5   10000 perm   2 sec   (5375 perm/sec)   p_kst 5.910000e-02   p_cons 4.700000e-02   p_joint 8.190000e-02

Joint ci ratio: 7.100076e-02	ci left: 1.275345e-01	ci right 1.369727e-01	k: 2644	n:20000
Cons ci ratio: 1.229040e-01	ci left: 4.541801e-02	ci right 5.141416e-02	k: 967	n:20000
KS ci ratio: 1.081378e-01	ci left: 5.830682e-02	ci right 6.502132e-02	k: 1232	n:20000
SLC9A5   20000 perm   4 sec   (4758 perm/sec)   p_kst 6.160000e-02   p_cons 4.835000e-02   p_joint 1.322000e-01

Joint ci ratio: 5.655536e-02	ci left: 1.341157e-01	ci right 1.419546e-01	k: 4140	n:30000
Cons ci ratio: 1.010851e-01	ci left: 4.531547e-02	ci right 5.017259e-02	k: 1431	n:30000
KS ci ratio: 8.869151e-02	ci left: 5.841563e-02	ci right 6.386974e-02	k: 1833	n:30000
SLC9A5   30000 perm   7 sec   (4542 perm/sec)   p_kst 6.110000e-02   p_cons 4.770000e-02   p_joint 1.380000e-01

Joint ci ratio: 4.922357e-02	ci left: 1.334711e-01	ci right 1.402317e-01	k: 5473	n:40000
Cons ci ratio: 7.762982e-02	ci left: 5.759400e-02	ci right 6.227014e-02	k: 2396	n:40000
KS ci ratio: 7.757819e-02	ci left: 5.766763e-02	ci right 6.234650e-02	k: 2399	n:40000
SLC9A5   40000 perm   9 sec   (4399 perm/sec)   p_kst 5.997500e-02   p_cons 5.990000e-02   p_joint 1.368250e-01

Outputting figure to mutsig2_images.part000000000162/SLC9A5.2_2755_40000_0.059975_0.0599_0.13683.png
                gene_name: SLC9A5
               theta_stop: 0.078 
                    nperm: 40000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 96 percent done.
SMAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.466463e-02	ci left: 3.302166e-01	ci right 3.488769e-01	k: 3395	n:10000
Cons ci ratio: 3.255939e-02	ci left: 5.819908e-01	ci right 6.013557e-01	k: 5917	n:10000
KS ci ratio: 1.395808e-01	ci left: 6.797633e-02	ci right 7.827401e-02	k: 730	n:10000
SMAD1   10000 perm   2 sec   (6251 perm/sec)   p_kst 7.300000e-02   p_cons 5.917000e-01   p_joint 3.395000e-01

Joint ci ratio: 2.538380e-02	ci left: 5.369162e-01	ci right 5.507710e-01	k: 10877	n:20000
Cons ci ratio: 2.274658e-02	ci left: 5.907149e-01	ci right 6.043568e-01	k: 11951	n:20000
KS ci ratio: 9.910338e-02	ci left: 6.894349e-02	ci right 7.618137e-02	k: 1450	n:20000
SMAD1   20000 perm   4 sec   (5418 perm/sec)   p_kst 7.250000e-02   p_cons 5.975500e-01   p_joint 5.438500e-01

Outputting figure to mutsig2_images.part000000000162/SMAD1.2_1422_20000_0.0725_0.59755_0.54385.png
                gene_name: SMAD1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 97 percent done.
SMAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.668649e-02	ci left: 4.037247e-01	ci right 4.231258e-01	k: 4134	n:10000
Cons ci ratio: 7.223301e-02	ci left: 2.192151e-01	ci right 2.357440e-01	k: 2274	n:10000
KS ci ratio: 5.546629e-02	ci left: 3.237627e-01	ci right 3.423347e-01	k: 3330	n:10000
SMAP1   10000 perm   2 sec   (6208 perm/sec)   p_kst 3.330000e-01   p_cons 2.274000e-01   p_joint 4.134000e-01

Outputting figure to mutsig2_images.part000000000162/SMAP1.2_1448_10000_0.333_0.2274_0.4134.png
                gene_name: SMAP1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 99 percent done.
SMARCE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.881942e-02	ci left: 6.396537e-01	ci right 6.584594e-01	k: 6491	n:10000
KS ci ratio: 1.360814e-02	ci left: 8.862643e-01	ci right 8.985060e-01	k: 8925	n:10000
SMARCE1   10000 perm   2 sec   (6616 perm/sec)   p_kst 8.925000e-01   p_cons 6.491000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000162/SMARCE1.2_1276_10000_0.8925_0.6491_1.png
                gene_name: SMARCE1
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000162
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 162 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1644>
Subject: Job 9894144: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1644>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000163> was used as the working directory.
Started at Sat Oct  6 00:30:13 2012
Results reported at Sat Oct  6 00:36:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000163.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000163.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 163  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000163.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    402.98 sec.
    Max Memory :      3454 MB
    Max Swap   :      6009 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
163
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 163
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 163: processing genes 14605 - 14694
Calculating significance of each gene.
Using projection method.
14605	SMCP	1
14606	SMCR7	1
14607	SMCR7L	8.601423e-01
14608	SMCR8	9.865422e-01
14609	SMEK1	8.217695e-01
14610	SMEK2	7.689914e-01
14611	SMG1	9.746380e-01
14612	SMG5	2.136427e-01
14613	SMG6	8.504660e-01
14614	SMG7	9.436582e-02
14615	SMNDC1	1
14616	SMO	9.465320e-01
14617	SMOC1	7.274276e-01
14618	SMOC2	7.679626e-02
14619	SMOX	9.545386e-01
14620	SMPD1	1.367437e-01
14621	SMPD2	1
14622	SMPD3	7.186057e-01
14623	SMPD4	9.764777e-01
14624	SMPDL3A	4.884695e-01
14625	SMPDL3B	6.791131e-01
14626	SMPX	1
14627	SMR3A	1.849882e-01
14628	SMR3B	3.222203e-01
14629	SMS	6.058167e-01
14630	SMTN	8.475404e-01
14631	SMTNL1	4.590126e-01
14632	SMTNL2	1
14633	SMU1	1
14634	SMUG1	6.079957e-02
14635	SMURF1	7.913324e-01
14636	SMURF2	7.792112e-01
14637	SMYD1	5.065970e-01
14638	SMYD2	7.819318e-01
14639	SMYD3	4.205096e-01
14640	SMYD4	1
14641	SMYD5	1.537149e-01
14642	SNAI1	6.797302e-01
14643	SNAI2	4.189779e-01
14644	SNAI3	1
14645	SNAP23	2.499241e-01
14646	SNAP25	6.636705e-01
14647	SNAP29	8.935028e-02
14648	SNAP47	1.554035e-01
14649	SNAP91	6.380511e-01
14650	SNAPC1	5.133077e-02
14651	SNAPC2	5.110969e-01
14652	SNAPC3	5.776354e-01
14653	SNAPC4	9.641733e-01
14654	SNAPC5	2.364973e-01
14655	SNAPIN	1
14656	SNCA	2.837548e-01
14657	SNCAIP	9.685756e-01
14658	SNCB	1
14659	SNCG	1
14660	SND1	2.364120e-01
14661	SNED1	9.930302e-01
14662	SNF8	1
14663	SNHG3-RCC1	6.293572e-01
14664	SNIP1	3.665020e-01
14665	SNN	1
14666	SNPH	7.178156e-01
14667	SNRK	9.202236e-01
14668	SNRNP200	6.944599e-01
14669	SNRNP25	2.999147e-01
14670	SNRNP27	9.472957e-02
14671	SNRNP35	7.319537e-01
14672	SNRNP40	1
14673	SNRNP48	1
14674	SNRNP70	8.984688e-01
14675	SNRPA	7.652409e-01
14676	SNRPA1	1
14677	SNRPB	6.947089e-01
14678	SNRPB2	4.326827e-01
14679	SNRPC	5.507470e-01
14680	SNRPD1	1
14681	SNRPD2	1
14682	SNRPD3	2.603300e-01
14683	SNRPE	1.010764e-01
14684	SNRPF	1
14685	SNRPG	1
14686	SNRPN	2.548405e-01
14687	SNTA1	9.479022e-01
14688	SNTB1	9.259990e-01
14689	SNTB2	6.919816e-01
14690	SNTG1	1.537263e-01
14691	SNTG2	6.394174e-01
14692	SNTN	1
14693	SNUPN	3.639752e-01
14694	SNURF	3.605737e-01
Done

Running MutSig 2:
Scatter job 163: processing genes 14605 - 14694
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SMG1
Processing conservation and coverage...
88% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.538873e-02	ci left: 5.410874e-01	ci right 5.606829e-01	k: 5509	n:10000
KS ci ratio: 2.165393e-02	ci left: 7.577777e-01	ci right 7.744670e-01	k: 7662	n:10000
SMG1   10000 perm   3 sec   (2925 perm/sec)   p_kst 7.662000e-01   p_cons 5.509000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SMG1.12_11238_10000_0.7662_0.5509_1.png
                gene_name: SMG1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 2 percent done.
SNRNP200
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.799302e-02	ci left: 8.184250e-01	ci right 8.333847e-01	k: 8260	n:10000
Cons ci ratio: 3.956422e-02	ci left: 4.854532e-01	ci right 5.051496e-01	k: 4953	n:10000
KS ci ratio: 2.585051e-02	ci left: 6.877856e-01	ci right 7.058996e-01	k: 6969	n:10000
SNRNP200   10000 perm   3 sec   (3970 perm/sec)   p_kst 6.969000e-01   p_cons 4.953000e-01   p_joint 8.260000e-01

Outputting figure to mutsig2_images.part000000000163/SNRNP200.9_6591_10000_0.6969_0.4953_0.826.png
                gene_name: SNRNP200
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 5 percent done.
SMG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.024168e-02	ci left: 7.813762e-01	ci right 7.974549e-01	k: 7895	n:10000
Cons ci ratio: 2.328347e-02	ci left: 7.304755e-01	ci right 7.477850e-01	k: 7392	n:10000
KS ci ratio: 2.696950e-02	ci left: 6.694464e-01	ci right 6.878494e-01	k: 6787	n:10000
SMG5   10000 perm   2 sec   (4799 perm/sec)   p_kst 6.787000e-01   p_cons 7.392000e-01   p_joint 7.895000e-01

Outputting figure to mutsig2_images.part000000000163/SMG5.7_3139_10000_0.6787_0.7392_0.7895.png
                gene_name: SMG5
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 7 percent done.
SND1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.197770e-03	ci left: 9.724899e-01	ci right 9.786288e-01	k: 9757	n:10000
Cons ci ratio: 2.121254e-02	ci left: 7.651672e-01	ci right 7.816732e-01	k: 7735	n:10000
KS ci ratio: 1.954562e-02	ci left: 7.929363e-01	ci right 8.086881e-01	k: 8009	n:10000
SND1   10000 perm   2 sec   (4983 perm/sec)   p_kst 8.009000e-01   p_cons 7.735000e-01   p_joint 9.757000e-01

Outputting figure to mutsig2_images.part000000000163/SND1.7_2829_10000_0.8009_0.7735_0.9757.png
                gene_name: SND1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 9 percent done.
SMG7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.714316e-02	ci left: 3.107615e-01	ci right 3.291435e-01	k: 3199	n:10000
Cons ci ratio: 7.204855e-02	ci left: 2.201034e-01	ci right 2.366552e-01	k: 2283	n:10000
KS ci ratio: 7.142066e-02	ci left: 2.231634e-01	ci right 2.397933e-01	k: 2314	n:10000
SMG7   10000 perm   2 sec   (4942 perm/sec)   p_kst 2.314000e-01   p_cons 2.283000e-01   p_joint 3.199000e-01

Outputting figure to mutsig2_images.part000000000163/SMG7.6_3885_10000_0.2314_0.2283_0.3199.png
                gene_name: SMG7
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 12 percent done.
SMPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.317679e-01	ci left: 7.591905e-02	ci right 8.672633e-02	k: 812	n:10000
Cons ci ratio: 1.696151e-01	ci left: 4.638557e-02	ci right 5.507852e-02	k: 506	n:10000
KS ci ratio: 7.735992e-02	ci left: 1.963361e-01	ci right 2.122365e-01	k: 2042	n:10000
SMPD1   10000 perm   2 sec   (5361 perm/sec)   p_kst 2.042000e-01   p_cons 5.060000e-02   p_joint 8.120000e-02

Joint ci ratio: 8.413924e-02	ci left: 9.376599e-02	ci right 1.020513e-01	k: 1957	n:20000
Cons ci ratio: 1.190752e-01	ci left: 4.833156e-02	ci right 5.449968e-02	k: 1027	n:20000
KS ci ratio: 5.558416e-02	ci left: 1.935848e-01	ci right 2.047028e-01	k: 3982	n:20000
SMPD1   20000 perm   4 sec   (4867 perm/sec)   p_kst 1.991000e-01   p_cons 5.135000e-02   p_joint 9.785000e-02

Joint ci ratio: 6.338671e-02	ci left: 1.094713e-01	ci right 1.166705e-01	k: 3391	n:30000
Cons ci ratio: 9.772734e-02	ci left: 4.840721e-02	ci right 5.341355e-02	k: 1526	n:30000
KS ci ratio: 4.494110e-02	ci left: 1.977335e-01	ci right 2.068575e-01	k: 6068	n:30000
SMPD1   30000 perm   6 sec   (4665 perm/sec)   p_kst 2.022667e-01   p_cons 5.086667e-02   p_joint 1.130333e-01

Outputting figure to mutsig2_images.part000000000163/SMPD1.6_1960_30000_0.20227_0.050867_0.11303.png
                gene_name: SMPD1
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 14 percent done.
SMYD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.380585e-01	ci left: 6.942795e-02	ci right 7.982148e-02	k: 745	n:10000
Cons ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
KS ci ratio: 7.972063e-02	ci left: 1.868804e-01	ci right 2.024978e-01	k: 1946	n:10000
SMYD5   10000 perm   2 sec   (5884 perm/sec)   p_kst 1.946000e-01   p_cons 1.292000e-01   p_joint 7.450000e-02

Joint ci ratio: 9.289637e-02	ci left: 7.793991e-02	ci right 8.558220e-02	k: 1634	n:20000
Cons ci ratio: 7.167364e-02	ci left: 1.254174e-01	ci right 1.347904e-01	k: 2601	n:20000
KS ci ratio: 5.637173e-02	ci left: 1.891825e-01	ci right 2.002064e-01	k: 3893	n:20000
SMYD5   20000 perm   4 sec   (5214 perm/sec)   p_kst 1.946500e-01   p_cons 1.300500e-01   p_joint 8.170000e-02

Outputting figure to mutsig2_images.part000000000163/SMYD5.6_1309_20000_0.19465_0.13005_0.0817.png
                gene_name: SMYD5
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.086 

Current progress: 16 percent done.
SNAP91
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.630513e-02	ci left: 2.007708e-01	ci right 2.167992e-01	k: 2087	n:10000
Cons ci ratio: 3.695388e-02	ci left: 5.195598e-01	ci right 5.392231e-01	k: 5294	n:10000
KS ci ratio: 1.011813e-01	ci left: 1.238583e-01	ci right 1.371578e-01	k: 1304	n:10000
SNAP91   10000 perm   2 sec   (5032 perm/sec)   p_kst 1.304000e-01   p_cons 5.294000e-01   p_joint 2.087000e-01

Joint ci ratio: 5.070921e-02	ci left: 2.241822e-01	ci right 2.358963e-01	k: 4600	n:20000
Cons ci ratio: 2.588669e-02	ci left: 5.271571e-01	ci right 5.410330e-01	k: 10682	n:20000
KS ci ratio: 6.885612e-02	ci left: 1.346274e-01	ci right 1.442777e-01	k: 2788	n:20000
SNAP91   20000 perm   4 sec   (4564 perm/sec)   p_kst 1.394000e-01   p_cons 5.341000e-01   p_joint 2.300000e-01

Outputting figure to mutsig2_images.part000000000163/SNAP91.6_2832_20000_0.1394_0.5341_0.23.png
                gene_name: SNAP91
               theta_stop: 0.069 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 19 percent done.
SNTG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.449299e-02	ci left: 7.102792e-01	ci right 7.279930e-01	k: 7192	n:10000
Cons ci ratio: 3.389760e-02	ci left: 5.623328e-01	ci right 5.818252e-01	k: 5721	n:10000
KS ci ratio: 3.695388e-02	ci left: 5.195598e-01	ci right 5.392231e-01	k: 5294	n:10000
SNTG1   10000 perm   2 sec   (5457 perm/sec)   p_kst 5.294000e-01   p_cons 5.721000e-01   p_joint 7.192000e-01

Outputting figure to mutsig2_images.part000000000163/SNTG1.6_1622_10000_0.5294_0.5721_0.7192.png
                gene_name: SNTG1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 21 percent done.
SMG6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.935644e-02	ci left: 2.336317e-01	ci right 2.505188e-01	k: 2420	n:10000
Cons ci ratio: 1.123029e-01	ci left: 1.024689e-01	ci right 1.147601e-01	k: 1085	n:10000
KS ci ratio: 3.868023e-02	ci left: 4.967503e-01	ci right 5.164458e-01	k: 5066	n:10000
SMG6   10000 perm   2 sec   (4835 perm/sec)   p_kst 5.066000e-01   p_cons 1.085000e-01   p_joint 2.420000e-01

Joint ci ratio: 4.261445e-02	ci left: 2.909206e-01	ci right 3.036384e-01	k: 5945	n:20000
Cons ci ratio: 7.922764e-02	ci left: 1.047130e-01	ci right 1.134010e-01	k: 2180	n:20000
KS ci ratio: 2.757553e-02	ci left: 4.955956e-01	ci right 5.095036e-01	k: 10051	n:20000
SMG6   20000 perm   5 sec   (4343 perm/sec)   p_kst 5.025500e-01   p_cons 1.090000e-01   p_joint 2.972500e-01

Outputting figure to mutsig2_images.part000000000163/SMG6.5_4336_20000_0.50255_0.109_0.29725.png
                gene_name: SMG6
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 23 percent done.
SMOC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.101880e-02	ci left: 7.684076e-01	ci right 7.848309e-01	k: 7767	n:10000
Cons ci ratio: 3.095346e-02	ci left: 6.062845e-01	ci right 6.254480e-01	k: 6159	n:10000
KS ci ratio: 3.454578e-02	ci left: 5.530107e-01	ci right 5.725527e-01	k: 5628	n:10000
SMOC2   10000 perm   2 sec   (6169 perm/sec)   p_kst 5.628000e-01   p_cons 6.159000e-01   p_joint 7.767000e-01

Outputting figure to mutsig2_images.part000000000163/SMOC2.5_1426_10000_0.5628_0.6159_0.7767.png
                gene_name: SMOC2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 26 percent done.
SMEK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.273467e-02	ci left: 2.719080e-01	ci right 2.896199e-01	k: 2807	n:10000
Cons ci ratio: 4.444986e-02	ci left: 4.276467e-01	ci right 4.471898e-01	k: 4374	n:10000
KS ci ratio: 8.038774e-02	ci left: 1.843208e-01	ci right 1.998590e-01	k: 1920	n:10000
SMEK2   10000 perm   2 sec   (5403 perm/sec)   p_kst 1.920000e-01   p_cons 4.374000e-01   p_joint 2.807000e-01

Outputting figure to mutsig2_images.part000000000163/SMEK2.4_2618_10000_0.192_0.4374_0.2807.png
                gene_name: SMEK2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 28 percent done.
SMUG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.055019e-01	ci left: 1.148645e-01	ci right 1.277571e-01	k: 1212	n:10000
Cons ci ratio: 2.767080e-02	ci left: 6.580680e-01	ci right 6.766344e-01	k: 6674	n:10000
KS ci ratio: 1.388648e-01	ci left: 6.865367e-02	ci right 7.899624e-02	k: 737	n:10000
SMUG1   10000 perm   2 sec   (6555 perm/sec)   p_kst 7.370000e-02   p_cons 6.674000e-01   p_joint 1.212000e-01

Joint ci ratio: 6.471824e-02	ci left: 1.499604e-01	ci right 1.600401e-01	k: 3099	n:20000
Cons ci ratio: 2.030328e-02	ci left: 6.441466e-01	ci right 6.574095e-01	k: 13016	n:20000
KS ci ratio: 9.925096e-02	ci left: 6.874809e-02	ci right 7.597683e-02	k: 1446	n:20000
SMUG1   20000 perm   4 sec   (5550 perm/sec)   p_kst 7.230000e-02   p_cons 6.508000e-01   p_joint 1.549500e-01

Outputting figure to mutsig2_images.part000000000163/SMUG1.4_821_20000_0.0723_0.6508_0.15495.png
                gene_name: SMUG1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.069 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 30 percent done.
SMYD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.219129e-02	ci left: 7.487731e-01	ci right 7.656768e-01	k: 7573	n:10000
KS ci ratio: 2.704372e-02	ci left: 6.682378e-01	ci right 6.866587e-01	k: 6775	n:10000
SMYD3   10000 perm   2 sec   (6202 perm/sec)   p_kst 6.775000e-01   p_cons 7.573000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SMYD3.4_1335_10000_0.6775_0.7573_1.png
                gene_name: SMYD3
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
SNAP47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.822641e-02	ci left: 5.026508e-01	ci right 5.223419e-01	k: 5125	n:10000
Cons ci ratio: 4.385883e-02	ci left: 4.342293e-01	ci right 4.538033e-01	k: 4440	n:10000
KS ci ratio: 4.772199e-02	ci left: 3.931666e-01	ci right 4.124900e-01	k: 4028	n:10000
SNAP47   10000 perm   2 sec   (5789 perm/sec)   p_kst 4.028000e-01   p_cons 4.440000e-01   p_joint 5.125000e-01

Outputting figure to mutsig2_images.part000000000163/SNAP47.4_1415_10000_0.4028_0.444_0.5125.png
                gene_name: SNAP47
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 35 percent done.
SNAPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.477642e-02	ci left: 4.240569e-01	ci right 4.435817e-01	k: 4338	n:10000
Cons ci ratio: 3.844114e-02	ci left: 4.998504e-01	ci right 5.195439e-01	k: 5097	n:10000
KS ci ratio: 7.144074e-02	ci left: 2.230647e-01	ci right 2.396920e-01	k: 2313	n:10000
SNAPC1   10000 perm   2 sec   (5823 perm/sec)   p_kst 2.313000e-01   p_cons 5.097000e-01   p_joint 4.338000e-01

Outputting figure to mutsig2_images.part000000000163/SNAPC1.4_1147_10000_0.2313_0.5097_0.4338.png
                gene_name: SNAPC1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 37 percent done.
SMPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.578567e-02	ci left: 8.535544e-01	ci right 8.672349e-01	k: 8605	n:10000
Cons ci ratio: 7.408143e-03	ci left: 9.618396e-01	ci right 9.690860e-01	k: 9656	n:10000
KS ci ratio: 3.767188e-02	ci left: 5.099533e-01	ci right 5.296352e-01	k: 5198	n:10000
SMPD3   10000 perm   2 sec   (5827 perm/sec)   p_kst 5.198000e-01   p_cons 9.656000e-01   p_joint 8.605000e-01

Outputting figure to mutsig2_images.part000000000163/SMPD3.3_1996_10000_0.5198_0.9656_0.8605.png
                gene_name: SMPD3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 40 percent done.
SMTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.816792e-02	ci left: 2.399555e-01	ci right 2.569912e-01	k: 2484	n:10000
Cons ci ratio: 1.390393e-02	ci left: 8.819628e-01	ci right 8.944101e-01	k: 8883	n:10000
KS ci ratio: 1.311543e-01	ci left: 7.659787e-02	ci right 8.744709e-02	k: 819	n:10000
SMTN   10000 perm   2 sec   (5387 perm/sec)   p_kst 8.190000e-02   p_cons 8.883000e-01   p_joint 2.484000e-01

Joint ci ratio: 5.012231e-02	ci left: 2.282951e-01	ci right 2.400822e-01	k: 4683	n:20000
Cons ci ratio: 1.048722e-02	ci left: 8.701339e-01	ci right 8.793569e-01	k: 17496	n:20000
KS ci ratio: 9.383708e-02	ci left: 7.647207e-02	ci right 8.405049e-02	k: 1604	n:20000
SMTN   20000 perm   4 sec   (4883 perm/sec)   p_kst 8.020000e-02   p_cons 8.748000e-01   p_joint 2.341500e-01

Outputting figure to mutsig2_images.part000000000163/SMTN.3_2979_20000_0.0802_0.8748_0.23415.png
                gene_name: SMTN
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 42 percent done.
SMURF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.837173e-02	ci left: 6.467962e-01	ci right 6.655127e-01	k: 6562	n:10000
Cons ci ratio: 1.613966e-01	ci left: 5.118874e-02	ci right 6.027224e-02	k: 556	n:10000
KS ci ratio: 1.360105e-02	ci left: 8.863668e-01	ci right 8.986035e-01	k: 8926	n:10000
SMURF1   10000 perm   2 sec   (6096 perm/sec)   p_kst 8.926000e-01   p_cons 5.560000e-02   p_joint 6.562000e-01

Joint ci ratio: 2.919126e-02	ci left: 4.671590e-01	ci right 4.810486e-01	k: 9482	n:20000
Cons ci ratio: 1.026566e-01	ci left: 6.445142e-02	ci right 7.147482e-02	k: 1358	n:20000
KS ci ratio: 9.508011e-03	ci left: 8.904145e-01	ci right 8.989704e-01	k: 17895	n:20000
SMURF1   20000 perm   4 sec   (5381 perm/sec)   p_kst 8.947500e-01   p_cons 6.790000e-02   p_joint 4.741000e-01

Joint ci ratio: 1.638978e-02	ci left: 6.505595e-01	ci right 6.613436e-01	k: 19679	n:30000
Cons ci ratio: 8.407404e-02	ci left: 6.471901e-02	ci right 7.043175e-02	k: 2026	n:30000
KS ci ratio: 7.821158e-03	ci left: 8.897854e-01	ci right 8.968049e-01	k: 26800	n:30000
SMURF1   30000 perm   6 sec   (5120 perm/sec)   p_kst 8.933333e-01   p_cons 6.753333e-02   p_joint 6.559667e-01

Outputting figure to mutsig2_images.part000000000163/SMURF1.3_2350_30000_0.89333_0.067533_0.65597.png
                gene_name: SMURF1
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 44 percent done.
SMYD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.200595e-02	ci left: 9.086422e-01	ci right 9.197151e-01	k: 9143	n:10000
Cons ci ratio: 2.288515e-02	ci left: 7.371453e-01	ci right 7.543113e-01	k: 7458	n:10000
KS ci ratio: 2.280672e-02	ci left: 7.384593e-01	ci right 7.555965e-01	k: 7471	n:10000
SMYD1   10000 perm   2 sec   (5808 perm/sec)   p_kst 7.471000e-01   p_cons 7.458000e-01   p_joint 9.143000e-01

Outputting figure to mutsig2_images.part000000000163/SMYD1.3_1513_10000_0.7471_0.7458_0.9143.png
                gene_name: SMYD1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 47 percent done.
SNAP29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.353899e-02	ci left: 5.675467e-01	ci right 5.870083e-01	k: 5773	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
SNAP29   10000 perm   2 sec   (5300 perm/sec)   p_kst 1   p_cons 5.773000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SNAP29.3_797_10000_1_0.5773_1.png
                gene_name: SNAP29
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
SNAPC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.853744e-02	ci left: 3.004459e-01	ci right 3.186652e-01	k: 3095	n:10000
Cons ci ratio: 2.046673e-02	ci left: 7.776263e-01	ci right 7.938069e-01	k: 7858	n:10000
KS ci ratio: 1.426573e-01	ci left: 6.517166e-02	ci right 7.528044e-02	k: 701	n:10000
SNAPC3   10000 perm   2 sec   (6532 perm/sec)   p_kst 7.010000e-02   p_cons 7.858000e-01   p_joint 3.095000e-01

Joint ci ratio: 4.730941e-02	ci left: 2.494664e-01	ci right 2.616048e-01	k: 5110	n:20000
Cons ci ratio: 1.472745e-02	ci left: 7.740421e-01	ci right 7.855765e-01	k: 15597	n:20000
KS ci ratio: 9.947345e-02	ci left: 6.845501e-02	ci right 7.567000e-02	k: 1440	n:20000
SNAPC3   20000 perm   3 sec   (5826 perm/sec)   p_kst 7.200000e-02   p_cons 7.798500e-01   p_joint 2.555000e-01

Outputting figure to mutsig2_images.part000000000163/SNAPC3.3_1272_20000_0.072_0.77985_0.2555.png
                gene_name: SNAPC3
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.076 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 51 percent done.
SNAPC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.356648e-02	ci left: 5.671455e-01	ci right 5.866096e-01	k: 5769	n:10000
KS ci ratio: 4.736681e-02	ci left: 3.967519e-01	ci right 4.161027e-01	k: 4064	n:10000
SNAPC4   10000 perm   2 sec   (5011 perm/sec)   p_kst 4.064000e-01   p_cons 5.769000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SNAPC4.3_4498_10000_0.4064_0.5769_1.png
                gene_name: SNAPC4
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
SNCAIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.141010e-02	ci left: 2.805242e-01	ci right 2.983986e-01	k: 2894	n:10000
Cons ci ratio: 7.827576e-02	ci left: 1.925924e-01	ci right 2.083825e-01	k: 2004	n:10000
KS ci ratio: 5.206347e-02	ci left: 3.522739e-01	ci right 3.712067e-01	k: 3617	n:10000
SNCAIP   10000 perm   2 sec   (5444 perm/sec)   p_kst 3.617000e-01   p_cons 2.004000e-01   p_joint 2.894000e-01

Outputting figure to mutsig2_images.part000000000163/SNCAIP.3_2800_10000_0.3617_0.2004_0.2894.png
                gene_name: SNCAIP
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 56 percent done.
SNED1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.612611e-02	ci left: 6.832497e-01	ci right 7.014381e-01	k: 6924	n:10000
Cons ci ratio: 1.328709e-02	ci left: 8.908764e-01	ci right 9.028912e-01	k: 8970	n:10000
KS ci ratio: 4.175413e-02	ci left: 4.585802e-01	ci right 4.782382e-01	k: 4684	n:10000
SNED1   10000 perm   2 sec   (4983 perm/sec)   p_kst 4.684000e-01   p_cons 8.970000e-01   p_joint 6.924000e-01

Outputting figure to mutsig2_images.part000000000163/SNED1.3_4366_10000_0.4684_0.897_0.6924.png
                gene_name: SNED1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 58 percent done.
SNIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.666569e-02	ci left: 5.234634e-01	ci right 5.431172e-01	k: 5333	n:10000
Cons ci ratio: 2.707466e-02	ci left: 6.677342e-01	ci right 6.861626e-01	k: 6770	n:10000
KS ci ratio: 5.751282e-02	ci left: 3.079837e-01	ci right 3.263229e-01	k: 3171	n:10000
SNIP1   10000 perm   2 sec   (6361 perm/sec)   p_kst 3.171000e-01   p_cons 6.770000e-01   p_joint 5.333000e-01

Outputting figure to mutsig2_images.part000000000163/SNIP1.3_1207_10000_0.3171_0.677_0.5333.png
                gene_name: SNIP1
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 60 percent done.
SMEK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.287309e-02	ci left: 7.373475e-01	ci right 7.545091e-01	k: 7460	n:10000
Cons ci ratio: 3.289058e-02	ci left: 5.770748e-01	ci right 5.964746e-01	k: 5868	n:10000
KS ci ratio: 3.528874e-02	ci left: 5.424899e-01	ci right 5.620796e-01	k: 5523	n:10000
SMEK1   10000 perm   2 sec   (5903 perm/sec)   p_kst 5.523000e-01   p_cons 5.868000e-01   p_joint 7.460000e-01

Outputting figure to mutsig2_images.part000000000163/SMEK1.2_2523_10000_0.5523_0.5868_0.746.png
                gene_name: SMEK1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 63 percent done.
SMOC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.093240e-02	ci left: 9.226548e-01	ci right 9.328943e-01	k: 9279	n:10000
Cons ci ratio: 1.022656e-01	ci left: 1.215110e-01	ci right 1.347065e-01	k: 1280	n:10000
KS ci ratio: 1.299497e-01	ci left: 7.795586e-02	ci right 8.888826e-02	k: 833	n:10000
SMOC1   10000 perm   2 sec   (6360 perm/sec)   p_kst 8.330000e-02   p_cons 1.280000e-01   p_joint 9.279000e-01

Joint ci ratio: 5.094654e-02	ci left: 2.225472e-01	ci right 2.342319e-01	k: 4567	n:20000
Cons ci ratio: 7.180058e-02	ci left: 1.250236e-01	ci right 1.343844e-01	k: 2593	n:20000
KS ci ratio: 8.917600e-02	ci left: 8.415788e-02	ci right 9.206234e-02	k: 1761	n:20000
SMOC1   20000 perm   4 sec   (5649 perm/sec)   p_kst 8.805000e-02   p_cons 1.296500e-01   p_joint 2.283500e-01

Outputting figure to mutsig2_images.part000000000163/SMOC1.2_1356_20000_0.08805_0.12965_0.22835.png
                gene_name: SMOC1
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 65 percent done.
SMOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.886768e-02	ci left: 2.980661e-01	ci right 3.162464e-01	k: 3071	n:10000
KS ci ratio: 1.309804e-01	ci left: 7.679184e-02	ci right 8.765300e-02	k: 821	n:10000
SMOX   10000 perm   2 sec   (6357 perm/sec)   p_kst 8.210000e-02   p_cons 3.071000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 4.179269e-02	ci left: 2.990702e-01	ci right 3.118864e-01	k: 6109	n:20000
KS ci ratio: 9.367852e-02	ci left: 7.671668e-02	ci right 8.430580e-02	k: 1609	n:20000
SMOX   20000 perm   4 sec   (5664 perm/sec)   p_kst 8.045000e-02   p_cons 3.054500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SMOX.2_1786_20000_0.08045_0.30545_1.png
                gene_name: SMOX
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
SMPDL3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.046880e-02	ci left: 4.741611e-01	ci right 4.938483e-01	k: 4840	n:10000
Cons ci ratio: 6.278129e-02	ci left: 2.716109e-01	ci right 2.893171e-01	k: 2804	n:10000
KS ci ratio: 4.075338e-02	ci left: 4.706645e-01	ci right 4.903468e-01	k: 4805	n:10000
SMPDL3A   10000 perm   2 sec   (6368 perm/sec)   p_kst 4.805000e-01   p_cons 2.804000e-01   p_joint 4.840000e-01

Outputting figure to mutsig2_images.part000000000163/SMPDL3A.2_1394_10000_0.4805_0.2804_0.484.png
                gene_name: SMPDL3A
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 70 percent done.
SMPDL3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.799894e-03	ci left: 9.477308e-01	ci right 9.562034e-01	k: 9521	n:10000
KS ci ratio: 1.393192e-02	ci left: 8.815532e-01	ci right 8.940199e-01	k: 8879	n:10000
SMPDL3B   10000 perm   2 sec   (6578 perm/sec)   p_kst 8.879000e-01   p_cons 9.521000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SMPDL3B.2_1517_10000_0.8879_0.9521_1.png
                gene_name: SMPDL3B
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
SMS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.381275e-02	ci left: 8.832939e-01	ci right 8.956782e-01	k: 8896	n:10000
Cons ci ratio: 5.323349e-02	ci left: 3.421367e-01	ci right 3.609498e-01	k: 3515	n:10000
KS ci ratio: 3.039364e-02	ci left: 6.149237e-01	ci right 6.340038e-01	k: 6245	n:10000
SMS   10000 perm   2 sec   (6631 perm/sec)   p_kst 6.245000e-01   p_cons 3.515000e-01   p_joint 8.896000e-01

Outputting figure to mutsig2_images.part000000000163/SMS.2_1145_10000_0.6245_0.3515_0.8896.png
                gene_name: SMS
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.90 

Current progress: 74 percent done.
SMTNL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.117314e-02	ci left: 1.813680e-01	ci right 1.968136e-01	k: 1890	n:10000
Cons ci ratio: 1.058498e-01	ci left: 1.141806e-01	ci right 1.270413e-01	k: 1205	n:10000
KS ci ratio: 1.279304e-02	ci left: 8.978526e-01	ci right 9.095111e-01	k: 9038	n:10000
SMTNL1   10000 perm   2 sec   (6332 perm/sec)   p_kst 9.038000e-01   p_cons 1.205000e-01   p_joint 1.890000e-01

Joint ci ratio: 4.689036e-02	ci left: 2.528397e-01	ci right 2.650304e-01	k: 5178	n:20000
Cons ci ratio: 7.477795e-02	ci left: 1.162646e-01	ci right 1.253460e-01	k: 2415	n:20000
KS ci ratio: 9.155984e-03	ci left: 8.974394e-01	ci right 9.057434e-01	k: 18033	n:20000
SMTNL1   20000 perm   4 sec   (5637 perm/sec)   p_kst 9.016500e-01   p_cons 1.207500e-01   p_joint 2.589000e-01

Outputting figure to mutsig2_images.part000000000163/SMTNL1.2_1571_20000_0.90165_0.12075_0.2589.png
                gene_name: SMTNL1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 77 percent done.
SMURF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.698126e-02	ci left: 1.979127e-01	ci right 2.138590e-01	k: 2058	n:10000
Cons ci ratio: 8.570440e-02	ci left: 1.655342e-01	ci right 1.804568e-01	k: 1729	n:10000
KS ci ratio: 4.608541e-02	ci left: 4.100020e-01	ci right 4.294448e-01	k: 4197	n:10000
SMURF2   10000 perm   2 sec   (5954 perm/sec)   p_kst 4.197000e-01   p_cons 1.729000e-01   p_joint 2.058000e-01

Outputting figure to mutsig2_images.part000000000163/SMURF2.2_2323_10000_0.4197_0.1729_0.2058.png
                gene_name: SMURF2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 79 percent done.
SNAI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.002993e-01	ci left: 1.258149e-01	ci right 1.391999e-01	k: 1324	n:10000
Cons ci ratio: 1.181211e-01	ci left: 9.331107e-02	ci right 1.051236e-01	k: 991	n:10000
KS ci ratio: 2.787044e-02	ci left: 6.548469e-01	ci right 6.734574e-01	k: 6642	n:10000
SNAI2   10000 perm   1 sec   (7167 perm/sec)   p_kst 6.642000e-01   p_cons 9.910000e-02   p_joint 1.324000e-01

Joint ci ratio: 7.229778e-02	ci left: 1.234976e-01	ci right 1.328108e-01	k: 2562	n:20000
Cons ci ratio: 8.383109e-02	ci left: 9.440373e-02	ci right 1.027134e-01	k: 1970	n:20000
KS ci ratio: 1.969488e-02	ci left: 6.579077e-01	ci right 6.710445e-01	k: 13290	n:20000
SNAI2   20000 perm   3 sec   (6280 perm/sec)   p_kst 6.645000e-01   p_cons 9.850000e-02   p_joint 1.281000e-01

Outputting figure to mutsig2_images.part000000000163/SNAI2.2_819_20000_0.6645_0.0985_0.1281.png
                gene_name: SNAI2
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 81 percent done.
SNAPC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.016804e-01	ci left: 3.271977e-02	ci right 4.015343e-02	k: 363	n:10000
Cons ci ratio: 2.076755e-01	ci left: 3.081908e-02	ci right 3.805543e-02	k: 343	n:10000
KS ci ratio: 8.834118e-02	ci left: 1.571841e-01	ci right 1.718119e-01	k: 1644	n:10000
SNAPC2   10000 perm   2 sec   (6624 perm/sec)   p_kst 1.644000e-01   p_cons 3.430000e-02   p_joint 3.630000e-02

Joint ci ratio: 9.027595e-02	ci left: 8.224775e-02	ci right 9.007306e-02	k: 1722	n:20000
Cons ci ratio: 1.438477e-01	ci left: 3.321952e-02	ci right 3.841656e-02	k: 715	n:20000
KS ci ratio: 6.318152e-02	ci left: 1.562764e-01	ci right 1.665222e-01	k: 3227	n:20000
SNAPC2   20000 perm   3 sec   (5826 perm/sec)   p_kst 1.613500e-01   p_cons 3.575000e-02   p_joint 8.610000e-02

Joint ci ratio: 5.819639e-02	ci left: 1.275304e-01	ci right 1.352078e-01	k: 3940	n:30000
Cons ci ratio: 1.182538e-01	ci left: 3.324024e-02	ci right 3.745037e-02	k: 1059	n:30000
KS ci ratio: 5.129748e-02	ci left: 1.587375e-01	ci right 1.671279e-01	k: 4887	n:30000
SNAPC2   30000 perm   5 sec   (5536 perm/sec)   p_kst 1.629000e-01   p_cons 3.530000e-02   p_joint 1.313333e-01

Joint ci ratio: 6.354324e-02	ci left: 8.410778e-02	ci right 8.965236e-02	k: 3474	n:40000
Cons ci ratio: 8.229726e-02	ci left: 5.146181e-02	ci right 5.590326e-02	k: 2146	n:40000
KS ci ratio: 4.444677e-02	ci left: 1.591694e-01	ci right 1.664297e-01	k: 6511	n:40000
SNAPC2   40000 perm   7 sec   (5340 perm/sec)   p_kst 1.627750e-01   p_cons 5.365000e-02   p_joint 8.685000e-02

Outputting figure to mutsig2_images.part000000000163/SNAPC2.2_1025_40000_0.16278_0.05365_0.08685.png
                gene_name: SNAPC2
               theta_stop: 0.082 
                    nperm: 40000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.090 

Current progress: 84 percent done.
SNRK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.007820e-01	ci left: 1.247387e-01	ci right 1.380768e-01	k: 1313	n:10000
Cons ci ratio: 1.494065e-01	ci left: 5.956990e-02	ci right 6.928573e-02	k: 643	n:10000
KS ci ratio: 1.130045e-01	ci left: 1.012990e-01	ci right 1.135307e-01	k: 1073	n:10000
SNRK   10000 perm   2 sec   (5999 perm/sec)   p_kst 1.073000e-01   p_cons 6.430000e-02   p_joint 1.313000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.050398e-01	ci left: 6.167058e-02	ci right 6.855652e-02	k: 1301	n:20000
KS ci ratio: 7.914620e-02	ci left: 1.049095e-01	ci right 1.136044e-01	k: 2184	n:20000
SNRK   20000 perm   4 sec   (5365 perm/sec)   p_kst 1.092000e-01   p_cons 6.505000e-02   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 8.534532e-02	ci left: 6.288924e-02	ci right 6.852856e-02	k: 1970	n:30000
KS ci ratio: 6.494042e-02	ci left: 1.047720e-01	ci right 1.118374e-01	k: 3248	n:30000
SNRK   30000 perm   6 sec   (5099 perm/sec)   p_kst 1.082667e-01   p_cons 6.566667e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SNRK.2_2318_30000_0.10827_0.065667_1.png
                gene_name: SNRK
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
SNRNP27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.233755e-02	ci left: 5.853022e-01	ci right 6.046425e-01	k: 5950	n:10000
Cons ci ratio: 6.501604e-02	ci left: 2.578534e-01	ci right 2.752827e-01	k: 2665	n:10000
KS ci ratio: 4.271375e-02	ci left: 4.473000e-01	ci right 4.669250e-01	k: 4571	n:10000
SNRNP27   10000 perm   1 sec   (6948 perm/sec)   p_kst 4.571000e-01   p_cons 2.665000e-01   p_joint 5.950000e-01

Outputting figure to mutsig2_images.part000000000163/SNRNP27.2_492_10000_0.4571_0.2665_0.595.png
                gene_name: SNRNP27
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 88 percent done.
SNRNP70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.013601e-01	ci left: 1.234670e-01	ci right 1.367493e-01	k: 1300	n:10000
Cons ci ratio: 2.371833e-02	ci left: 7.232022e-01	ci right 7.406625e-01	k: 7320	n:10000
KS ci ratio: 2.268173e-01	ci left: 2.570435e-02	ci right 3.237377e-02	k: 289	n:10000
SNRNP70   10000 perm   2 sec   (6504 perm/sec)   p_kst 2.890000e-02   p_cons 7.320000e-01   p_joint 1.300000e-01

Joint ci ratio: 1.035173e-01	ci left: 6.342669e-02	ci right 7.039986e-02	k: 1337	n:20000
Cons ci ratio: 1.652175e-02	ci left: 7.316955e-01	ci right 7.439353e-01	k: 14757	n:20000
KS ci ratio: 1.654508e-01	ci left: 2.503753e-02	ci right 2.960129e-02	k: 545	n:20000
SNRNP70   20000 perm   3 sec   (5737 perm/sec)   p_kst 2.725000e-02   p_cons 7.378500e-01   p_joint 6.685000e-02

Joint ci ratio: 6.211371e-02	ci left: 1.135478e-01	ci right 1.208598e-01	k: 3515	n:30000
Cons ci ratio: 1.344411e-02	ci left: 7.341583e-01	ci right 7.441287e-01	k: 22175	n:30000
KS ci ratio: 1.353462e-01	ci left: 2.535629e-02	ci right 2.906936e-02	k: 815	n:30000
SNRNP70   30000 perm   6 sec   (5387 perm/sec)   p_kst 2.716667e-02   p_cons 7.391667e-01   p_joint 1.171667e-01

Joint ci ratio: 3.344414e-02	ci left: 2.513556e-01	ci right 2.599299e-01	k: 10225	n:40000
Cons ci ratio: 1.171972e-02	ci left: 7.322790e-01	ci right 7.409367e-01	k: 29465	n:40000
KS ci ratio: 1.152680e-01	ci left: 2.647803e-02	ci right 2.974096e-02	k: 1123	n:40000
SNRNP70   40000 perm   8 sec   (5054 perm/sec)   p_kst 2.807500e-02   p_cons 7.366250e-01   p_joint 2.556250e-01

Joint ci ratio: 3.631198e-02	ci left: 1.855765e-01	ci right 1.924597e-01	k: 9450	n:50000
Cons ci ratio: 1.048744e-02	ci left: 7.325547e-01	ci right 7.402978e-01	k: 36822	n:50000
KS ci ratio: 1.033643e-01	ci left: 2.651294e-02	ci right 2.942221e-02	k: 1397	n:50000
SNRNP70   50000 perm   10 sec   (4958 perm/sec)   p_kst 2.794000e-02   p_cons 7.364400e-01   p_joint 1.890000e-01

Joint ci ratio: 2.863243e-02	ci left: 2.346135e-01	ci right 2.414452e-01	k: 14281	n:60000
Cons ci ratio: 9.562349e-03	ci left: 7.333571e-01	ci right 7.404200e-01	k: 44214	n:60000
KS ci ratio: 9.487159e-02	ci left: 2.635256e-02	ci right 2.899339e-02	k: 1659	n:60000
SNRNP70   60000 perm   12 sec   (4854 perm/sec)   p_kst 2.765000e-02   p_cons 7.369000e-01   p_joint 2.380167e-01

Outputting figure to mutsig2_images.part000000000163/SNRNP70.2_1350_60000_0.02765_0.7369_0.23802.png
                gene_name: SNRNP70
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 91 percent done.
SNRPE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.786419e-02	ci left: 6.549475e-01	ci right 6.735567e-01	k: 6643	n:10000
Cons ci ratio: 7.374718e-03	ci left: 9.621545e-01	ci right 9.693708e-01	k: 9659	n:10000
KS ci ratio: 6.241010e-02	ci left: 2.739874e-01	ci right 2.917393e-01	k: 2828	n:10000
SNRPE   10000 perm   2 sec   (6152 perm/sec)   p_kst 2.828000e-01   p_cons 9.659000e-01   p_joint 6.643000e-01

Outputting figure to mutsig2_images.part000000000163/SNRPE.2_299_10000_0.2828_0.9659_0.6643.png
                gene_name: SNRPE
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 93 percent done.
SNRPN
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 95 percent done.
SNTG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.502814e-01	ci left: 5.889456e-02	ci right 6.856151e-02	k: 636	n:10000
Cons ci ratio: 1.888568e-01	ci left: 3.738868e-02	ci right 4.528136e-02	k: 412	n:10000
KS ci ratio: 5.702521e-02	ci left: 3.116545e-01	ci right 3.300500e-01	k: 3208	n:10000
SNTG2   10000 perm   2 sec   (6156 perm/sec)   p_kst 3.208000e-01   p_cons 4.120000e-02   p_joint 6.360000e-02

Joint ci ratio: 1.005682e-01	ci left: 6.703871e-02	ci right 7.418673e-02	k: 1411	n:20000
Cons ci ratio: 1.275416e-01	ci left: 4.221676e-02	ci right 4.801642e-02	k: 901	n:20000
KS ci ratio: 3.997858e-02	ci left: 3.181117e-01	ci right 3.311393e-01	k: 6492	n:20000
SNTG2   20000 perm   4 sec   (5612 perm/sec)   p_kst 3.246000e-01   p_cons 4.505000e-02   p_joint 7.055000e-02

Joint ci ratio: 9.233957e-02	ci left: 5.404414e-02	ci right 5.930879e-02	k: 1699	n:30000
Cons ci ratio: 1.049530e-01	ci left: 4.209669e-02	ci right 4.679205e-02	k: 1332	n:30000
KS ci ratio: 3.265107e-02	ci left: 3.192026e-01	ci right 3.298314e-01	k: 9735	n:30000
SNTG2   30000 perm   6 sec   (5369 perm/sec)   p_kst 3.245000e-01   p_cons 4.440000e-02   p_joint 5.663333e-02

Joint ci ratio: 9.328885e-02	ci left: 4.029947e-02	ci right 4.426733e-02	k: 1690	n:40000
Cons ci ratio: 9.008203e-02	ci left: 4.316028e-02	ci right 4.725608e-02	k: 1807	n:40000
KS ci ratio: 2.830948e-02	ci left: 3.194141e-01	ci right 3.286115e-01	k: 12960	n:40000
SNTG2   40000 perm   8 sec   (5231 perm/sec)   p_kst 3.240000e-01   p_cons 4.517500e-02   p_joint 4.225000e-02

Outputting figure to mutsig2_images.part000000000163/SNTG2.2_1688_40000_0.324_0.045175_0.04225.png
                gene_name: SNTG2
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.043 
     ci_cons_bounds_right: 0.047 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.044 

Current progress: 98 percent done.
SNUPN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.032889e-02	ci left: 6.159285e-01	ci right 6.349984e-01	k: 6255	n:10000
KS ci ratio: 3.423800e-02	ci left: 5.574207e-01	ci right 5.769402e-01	k: 5672	n:10000
SNUPN   10000 perm   1 sec   (6694 perm/sec)   p_kst 5.672000e-01   p_cons 6.255000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000163/SNUPN.2_1115_10000_0.5672_0.6255_1.png
                gene_name: SNUPN
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000163
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 163 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1730>
Subject: Job 9894148: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1730>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000164> was used as the working directory.
Started at Sat Oct  6 00:30:19 2012
Results reported at Sat Oct  6 00:44:41 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000164.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000164.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 164  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000164.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    862.85 sec.
    Max Memory :      3607 MB
    Max Swap   :      5971 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
164
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 164
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 164: processing genes 14695 - 14785
Calculating significance of each gene.
Using projection method.
14695	SNW1	5.816026e-02
14696	SNX1	2.854226e-01
14697	SNX10	4.400469e-01
14698	SNX11	4.130267e-01
14699	SNX12	5.318318e-01
14700	SNX13	9.982651e-02
14701	SNX14	4.304532e-01
14702	SNX15	1
14703	SNX16	7.087392e-01
14704	SNX17	8.005754e-01
14705	SNX18	9.068122e-01
14706	SNX19	1.467526e-01
14707	SNX2	3.556856e-02
14708	SNX20	8.437181e-01
14709	SNX21	8.447438e-01
14710	SNX22	2.230942e-02
14711	SNX24	1
14712	SNX25	3.749188e-02
14713	SNX27	6.697014e-01
14714	SNX29	9.589738e-01
14715	SNX3	6.802493e-01
14716	SNX30	7.579122e-01
14717	SNX31	4.914032e-01
14718	SNX32	6.361798e-01
14719	SNX33	2.896905e-01
14720	SNX4	1
14721	SNX5	7.051051e-01
14722	SNX6	1
14723	SNX7	1.028669e-01
14724	SNX8	9.462980e-01
14725	SNX9	8.281900e-01
In gene SOAT1 the following bins exceed PROBCAP:
    COAD-AA-3678	categ 6	N = 1713    n = 1	mu =   2.96e-07
14726	SOAT1	7.021051e-01
14727	SOAT2	8.846884e-01
14728	SOBP	7.188626e-01
14729	SOCS1	1
14730	SOCS2	3.584455e-01
14731	SOCS3	1
14732	SOCS4	8.483404e-01
14733	SOCS5	2.028379e-01
14734	SOCS6	6.759922e-01
14735	SOCS7	1
14736	SOD1	1
14737	SOD2	3.175614e-02
14738	SOD3	1
14739	SOHLH1	1
14740	SOHLH2	1.703840e-04
14741	SOLH	1
14742	SON	5.517706e-01
14743	SORBS1	2.911388e-01
14744	SORBS2	9.150454e-01
14745	SORBS3	4.957775e-01
14746	SORCS1	1.018305e-04
14747	SORCS2	8.376446e-01
14748	SORCS3	2.267841e-03
14749	SORD	4.402931e-01
14750	SORL1	4.617957e-01
14751	SORT1	3.792584e-02
14752	SOS1	4.888672e-01
14753	SOS2	1.598945e-01
14754	SOST	1.604138e-01
14755	SOSTDC1	4.818800e-01
14756	SOX10	5.206217e-01
14757	SOX11	1
14758	SOX12	1
14759	SOX13	6.494400e-01
14760	SOX14	5.208156e-01
14761	SOX15	1
14762	SOX17	3.920246e-01
14763	SOX18	1
14764	SOX2	5.098825e-01
14765	SOX21	1.330211e-01
14766	SOX3	3.857595e-01
14767	SOX30	3.941534e-01
14768	SOX4	1
14769	SOX5	3.879663e-02
14770	SOX6	2.680559e-01
14771	SOX7	5.470675e-01
14772	SOX8	1
14773	SOX9	1.169163e-06
14774	SP1	6.879850e-01
14775	SP100	7.907074e-01
14776	SP110	9.454960e-01
14777	SP140	3.929976e-01
14778	SP140L	5.869619e-01
14779	SP2	1
14780	SP3	6.087906e-01
14781	SP4	5.738919e-01
14782	SP5	1
14783	SP6	9.183812e-01
14784	SP7	4.784436e-01
14785	SP8	2.967468e-01
Done

Running MutSig 2:
Scatter job 164: processing genes 14695 - 14785
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SORCS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.549380e-02	ci left: 1.372712e-01	ci right 1.511368e-01	k: 1441	n:10000
Cons ci ratio: 7.058784e-02	ci left: 2.273104e-01	ci right 2.440439e-01	k: 2356	n:10000
KS ci ratio: 1.008262e-01	ci left: 1.246409e-01	ci right 1.379747e-01	k: 1312	n:10000
SORCS1   10000 perm   2 sec   (4851 perm/sec)   p_kst 1.312000e-01   p_cons 2.356000e-01   p_joint 1.441000e-01

Joint ci ratio: 6.806409e-02	ci left: 1.373869e-01	ci right 1.471173e-01	k: 2844	n:20000
Cons ci ratio: 4.950154e-02	ci left: 2.327558e-01	ci right 2.446203e-01	k: 4773	n:20000
KS ci ratio: 7.194405e-02	ci left: 1.245805e-01	ci right 1.339276e-01	k: 2584	n:20000
SORCS1   20000 perm   6 sec   (3233 perm/sec)   p_kst 1.292000e-01   p_cons 2.386500e-01   p_joint 1.422000e-01

Outputting figure to mutsig2_images.part000000000164/SORCS1.15_3845_20000_0.1292_0.23865_0.1422.png
                gene_name: SORCS1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 2 percent done.
SON
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.588454e-02	ci left: 1.649446e-01	ci right 1.798468e-01	k: 1723	n:10000
Cons ci ratio: 1.150553e-01	ci left: 9.798552e-02	ci right 1.100463e-01	k: 1039	n:10000
KS ci ratio: 6.169492e-02	ci left: 2.786422e-01	ci right 2.964817e-01	k: 2875	n:10000
SON   10000 perm   2 sec   (4495 perm/sec)   p_kst 2.875000e-01   p_cons 1.039000e-01   p_joint 1.723000e-01

Joint ci ratio: 6.752543e-02	ci left: 1.393091e-01	ci right 1.490946e-01	k: 2883	n:20000
Cons ci ratio: 7.878237e-02	ci left: 1.057938e-01	ci right 1.145199e-01	k: 2202	n:20000
KS ci ratio: 4.358256e-02	ci left: 2.816807e-01	ci right 2.942810e-01	k: 5759	n:20000
SON   20000 perm   5 sec   (4135 perm/sec)   p_kst 2.879500e-01   p_cons 1.101000e-01   p_joint 1.441500e-01

Outputting figure to mutsig2_images.part000000000164/SON.12_7588_20000_0.28795_0.1101_0.14415.png
                gene_name: SON
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 4 percent done.
SORCS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.864716e-02	ci left: 2.996526e-01	ci right 3.178589e-01	k: 3087	n:10000
Cons ci ratio: 4.639896e-02	ci left: 4.067137e-01	ci right 4.261351e-01	k: 4164	n:10000
KS ci ratio: 8.106743e-02	ci left: 1.817616e-01	ci right 1.972197e-01	k: 1894	n:10000
SORCS3   10000 perm   2 sec   (5680 perm/sec)   p_kst 1.894000e-01   p_cons 4.164000e-01   p_joint 3.087000e-01

Outputting figure to mutsig2_images.part000000000164/SORCS3.12_3777_10000_0.1894_0.4164_0.3087.png
                gene_name: SORCS3
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 5 percent done.
SORBS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.375610e-01	ci left: 6.991195e-02	ci right 8.033717e-02	k: 750	n:10000
Cons ci ratio: 6.587477e-02	ci left: 2.528084e-01	ci right 2.701307e-01	k: 2614	n:10000
KS ci ratio: 1.531252e-01	ci left: 5.677313e-02	ci right 6.628428e-02	k: 614	n:10000
SORBS1   10000 perm   2 sec   (5149 perm/sec)   p_kst 6.140000e-02   p_cons 2.614000e-01   p_joint 7.500000e-02

Joint ci ratio: 8.999049e-02	ci left: 8.273747e-02	ci right 9.058319e-02	k: 1732	n:20000
Cons ci ratio: 4.678066e-02	ci left: 2.537327e-01	ci right 2.659372e-01	k: 5196	n:20000
KS ci ratio: 1.110461e-01	ci left: 5.538421e-02	ci right 6.194483e-02	k: 1172	n:20000
SORBS1   20000 perm   4 sec   (4701 perm/sec)   p_kst 5.860000e-02   p_cons 2.598000e-01   p_joint 8.660000e-02

Joint ci ratio: 7.192073e-02	ci left: 8.685033e-02	ci right 9.336263e-02	k: 2702	n:30000
Cons ci ratio: 3.650925e-02	ci left: 2.725045e-01	ci right 2.826719e-01	k: 8327	n:30000
KS ci ratio: 9.068307e-02	ci left: 5.596837e-02	ci right 6.131750e-02	k: 1758	n:30000
SORBS1   30000 perm   7 sec   (4526 perm/sec)   p_kst 5.860000e-02   p_cons 2.775667e-01   p_joint 9.006667e-02

Outputting figure to mutsig2_images.part000000000164/SORBS1.11_4200_30000_0.0586_0.27757_0.090067.png
                gene_name: SORBS1
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.093 

Current progress: 7 percent done.
SORL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.846382e-02	ci left: 3.857986e-01	ci right 4.050623e-01	k: 3954	n:10000
Cons ci ratio: 5.481118e-02	ci left: 3.290250e-01	ci right 3.476693e-01	k: 3383	n:10000
KS ci ratio: 5.440970e-02	ci left: 3.323022e-01	ci right 3.509901e-01	k: 3416	n:10000
SORL1   10000 perm   2 sec   (4797 perm/sec)   p_kst 3.416000e-01   p_cons 3.383000e-01   p_joint 3.954000e-01

Outputting figure to mutsig2_images.part000000000164/SORL1.11_6837_10000_0.3416_0.3383_0.3954.png
                gene_name: SORL1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 9 percent done.
SOS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.050957e-02	ci left: 2.277054e-01	ci right 2.444486e-01	k: 2360	n:10000
Cons ci ratio: 1.696987e-02	ci left: 8.349054e-01	ci right 8.492947e-01	k: 8422	n:10000
KS ci ratio: 1.081046e-01	ci left: 1.098838e-01	ci right 1.225407e-01	k: 1161	n:10000
SOS2   10000 perm   2 sec   (5600 perm/sec)   p_kst 1.161000e-01   p_cons 8.422000e-01   p_joint 2.360000e-01

Joint ci ratio: 5.437644e-02	ci left: 2.006110e-01	ci right 2.118745e-01	k: 4124	n:20000
Cons ci ratio: 1.214522e-02	ci left: 8.337815e-01	ci right 8.440197e-01	k: 16779	n:20000
KS ci ratio: 7.592629e-02	ci left: 1.131172e-01	ci right 1.220943e-01	k: 2351	n:20000
SOS2   20000 perm   4 sec   (5026 perm/sec)   p_kst 1.175500e-01   p_cons 8.389500e-01   p_joint 2.062000e-01

Outputting figure to mutsig2_images.part000000000164/SOS2.11_4091_20000_0.11755_0.83895_0.2062.png
                gene_name: SOS2
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 11 percent done.
SNX19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.847238e-02	ci left: 6.451864e-01	ci right 6.639235e-01	k: 6546	n:10000
Cons ci ratio: 6.333011e-02	ci left: 2.681458e-01	ci right 2.857843e-01	k: 2769	n:10000
KS ci ratio: 3.085544e-02	ci left: 6.077911e-01	ci right 6.269405e-01	k: 6174	n:10000
SNX19   10000 perm   2 sec   (5246 perm/sec)   p_kst 6.174000e-01   p_cons 2.769000e-01   p_joint 6.546000e-01

Outputting figure to mutsig2_images.part000000000164/SNX19.10_3023_10000_0.6174_0.2769_0.6546.png
                gene_name: SNX19
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.66 

Current progress: 13 percent done.
SOHLH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.680366e-02	ci left: 8.375528e-01	ci right 8.518458e-01	k: 8448	n:10000
Cons ci ratio: 5.198465e-02	ci left: 3.529698e-01	ci right 3.719104e-01	k: 3624	n:10000
KS ci ratio: 2.152098e-02	ci left: 7.600043e-01	ci right 7.766391e-01	k: 7684	n:10000
SOHLH2   10000 perm   1 sec   (6756 perm/sec)   p_kst 7.684000e-01   p_cons 3.624000e-01   p_joint 8.448000e-01

Outputting figure to mutsig2_images.part000000000164/SOHLH2.10_1322_10000_0.7684_0.3624_0.8448.png
                gene_name: SOHLH2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 15 percent done.
SOX9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.391704e-01	ci left: 6.836336e-02	ci right 7.868673e-02	k: 734	n:10000
Cons ci ratio: 5.155999e-02	ci left: 3.567477e-01	ci right 3.757303e-01	k: 3662	n:10000
KS ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
SOX9   10000 perm   2 sec   (6571 perm/sec)   p_kst 4.270000e-02   p_cons 3.662000e-01   p_joint 7.340000e-02

Joint ci ratio: 1.073055e-01	ci left: 5.918404e-02	ci right 6.594382e-02	k: 1250	n:20000
Cons ci ratio: 3.603797e-02	ci left: 3.649467e-01	ci right 3.783906e-01	k: 7433	n:20000
KS ci ratio: 1.325438e-01	ci left: 3.911656e-02	ci right 4.471761e-02	k: 837	n:20000
SOX9   20000 perm   3 sec   (5750 perm/sec)   p_kst 4.185000e-02   p_cons 3.716500e-01   p_joint 6.250000e-02

Joint ci ratio: 1.080879e-01	ci left: 3.972548e-02	ci right 4.429709e-02	k: 1259	n:30000
Cons ci ratio: 2.884150e-02	ci left: 3.755662e-01	ci right 3.865902e-01	k: 11432	n:30000
KS ci ratio: 1.090858e-01	ci left: 3.901127e-02	ci right 4.354478e-02	k: 1237	n:30000
SOX9   30000 perm   5 sec   (5515 perm/sec)   p_kst 4.123333e-02   p_cons 3.810667e-01   p_joint 4.196667e-02

Joint ci ratio: 7.671475e-02	ci left: 5.891953e-02	ci right 6.364441e-02	k: 2450	n:40000
Cons ci ratio: 2.486268e-02	ci left: 3.784817e-01	ci right 3.880353e-01	k: 15330	n:40000
KS ci ratio: 9.608147e-02	ci left: 3.802732e-02	ci right 4.188983e-02	k: 1597	n:40000
SOX9   40000 perm   7 sec   (5359 perm/sec)   p_kst 3.992500e-02   p_cons 3.832500e-01   p_joint 6.125000e-02

Outputting figure to mutsig2_images.part000000000164/SOX9.10_1542_40000_0.039925_0.38325_0.06125.png
                gene_name: SOX9
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.064 

Current progress: 16 percent done.
SNX13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.136070e-02	ci left: 3.585374e-01	ci right 3.775395e-01	k: 3680	n:10000
Cons ci ratio: 8.443842e-02	ci left: 1.697609e-01	ci right 1.848276e-01	k: 1772	n:10000
KS ci ratio: 2.502725e-02	ci left: 7.013997e-01	ci right 7.192776e-01	k: 7104	n:10000
SNX13   10000 perm   2 sec   (5656 perm/sec)   p_kst 7.104000e-01   p_cons 1.772000e-01   p_joint 3.680000e-01

Outputting figure to mutsig2_images.part000000000164/SNX13.9_2978_10000_0.7104_0.1772_0.368.png
                gene_name: SNX13
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 18 percent done.
SOX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.356728e-02	ci left: 7.257273e-01	ci right 7.431359e-01	k: 7345	n:10000
Cons ci ratio: 3.655537e-02	ci left: 5.249650e-01	ci right 5.446147e-01	k: 5348	n:10000
KS ci ratio: 3.214337e-02	ci left: 5.882125e-01	ci right 6.075305e-01	k: 5979	n:10000
SOX5   10000 perm   2 sec   (5892 perm/sec)   p_kst 5.979000e-01   p_cons 5.348000e-01   p_joint 7.345000e-01

Outputting figure to mutsig2_images.part000000000164/SOX5.8_2362_10000_0.5979_0.5348_0.7345.png
                gene_name: SOX5
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 20 percent done.
SNX25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.595841e-01	ci left: 5.234307e-02	ci right 6.151717e-02	k: 568	n:10000
Cons ci ratio: 1.442098e-01	ci left: 6.381856e-02	ci right 7.383439e-02	k: 687	n:10000
KS ci ratio: 1.122450e-01	ci left: 1.025665e-01	ci right 1.148625e-01	k: 1086	n:10000
SNX25   10000 perm   2 sec   (5847 perm/sec)   p_kst 1.086000e-01   p_cons 6.870000e-02   p_joint 5.680000e-02

Joint ci ratio: 1.311613e-01	ci left: 3.993964e-02	ci right 4.559426e-02	k: 854	n:20000
Cons ci ratio: 1.004153e-01	ci left: 6.723404e-02	ci right 7.439135e-02	k: 1415	n:20000
KS ci ratio: 7.785220e-02	ci left: 1.081032e-01	ci right 1.169098e-01	k: 2249	n:20000
SNX25   20000 perm   4 sec   (5313 perm/sec)   p_kst 1.124500e-01   p_cons 7.075000e-02   p_joint 4.270000e-02

Joint ci ratio: 9.030195e-02	ci left: 5.642509e-02	ci right 6.179402e-02	k: 1772	n:30000
Cons ci ratio: 8.217684e-02	ci left: 6.759561e-02	ci right 7.342123e-02	k: 2114	n:30000
KS ci ratio: 6.491802e-02	ci left: 1.048377e-01	ci right 1.119050e-01	k: 3250	n:30000
SNX25   30000 perm   6 sec   (5039 perm/sec)   p_kst 1.083333e-01   p_cons 7.046667e-02   p_joint 5.906667e-02

Outputting figure to mutsig2_images.part000000000164/SNX25.7_2595_30000_0.10833_0.070467_0.059067.png
                gene_name: SNX25
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.062 

Current progress: 22 percent done.
SORT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.170281e-02	ci left: 2.217814e-01	ci right 2.383761e-01	k: 2300	n:10000
Cons ci ratio: 3.971484e-02	ci left: 4.835542e-01	ci right 5.032497e-01	k: 4934	n:10000
KS ci ratio: 1.175301e-01	ci left: 9.418721e-02	ci right 1.060469e-01	k: 1000	n:10000
SORT1   10000 perm   2 sec   (5625 perm/sec)   p_kst 1.000000e-01   p_cons 4.934000e-01   p_joint 2.300000e-01

Joint ci ratio: 5.322437e-02	ci left: 2.076398e-01	ci right 2.190437e-01	k: 4266	n:20000
Cons ci ratio: 2.810725e-02	ci left: 4.860476e-01	ci right 4.999544e-01	k: 9860	n:20000
KS ci ratio: 8.240086e-02	ci left: 9.744601e-02	ci right 1.058702e-01	k: 2032	n:20000
SORT1   20000 perm   4 sec   (5102 perm/sec)   p_kst 1.016000e-01   p_cons 4.930000e-01   p_joint 2.133000e-01

Outputting figure to mutsig2_images.part000000000164/SORT1.7_2576_20000_0.1016_0.493_0.2133.png
                gene_name: SORT1
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 24 percent done.
SOS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.280251e-02	ci left: 5.783790e-01	ci right 5.977697e-01	k: 5881	n:10000
Cons ci ratio: 6.279685e-02	ci left: 2.715119e-01	ci right 2.892162e-01	k: 2803	n:10000
KS ci ratio: 1.338029e-02	ci left: 8.895437e-01	ci right 9.016248e-01	k: 8957	n:10000
SOS1   10000 perm   2 sec   (5925 perm/sec)   p_kst 8.957000e-01   p_cons 2.803000e-01   p_joint 5.881000e-01

Outputting figure to mutsig2_images.part000000000164/SOS1.7_4094_10000_0.8957_0.2803_0.5881.png
                gene_name: SOS1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 25 percent done.
SOX6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.323001e-01	ci left: 7.533730e-02	ci right 8.610844e-02	k: 806	n:10000
Cons ci ratio: 2.669889e-01	ci left: 1.827990e-02	ci right 2.400381e-02	k: 210	n:10000
KS ci ratio: 2.508199e-02	ci left: 7.004918e-01	ci right 7.183861e-01	k: 7095	n:10000
SOX6   10000 perm   2 sec   (6539 perm/sec)   p_kst 7.095000e-01   p_cons 2.100000e-02   p_joint 8.060000e-02

Joint ci ratio: 6.820389e-02	ci left: 1.368941e-01	ci right 1.466103e-01	k: 2834	n:20000
Cons ci ratio: 1.913577e-01	ci left: 1.858107e-02	ci right 2.256002e-02	k: 410	n:20000
KS ci ratio: 1.789536e-02	ci left: 6.994301e-01	ci right 7.121100e-01	k: 14116	n:20000
SOX6   20000 perm   3 sec   (5820 perm/sec)   p_kst 7.058000e-01   p_cons 2.050000e-02   p_joint 1.417000e-01

Joint ci ratio: 4.784638e-02	ci left: 1.784406e-01	ci right 1.872209e-01	k: 5484	n:30000
Cons ci ratio: 1.394401e-01	ci left: 2.387437e-02	ci right 2.748495e-02	k: 769	n:30000
KS ci ratio: 1.455067e-02	ci left: 7.023492e-01	ci right 7.126772e-01	k: 21226	n:30000
SOX6   30000 perm   5 sec   (5535 perm/sec)   p_kst 7.075333e-01   p_cons 2.563333e-02   p_joint 1.828000e-01

Joint ci ratio: 4.173805e-02	ci left: 1.768905e-01	ci right 1.844559e-01	k: 7226	n:40000
Cons ci ratio: 1.203188e-01	ci left: 2.429262e-02	ci right 2.742673e-02	k: 1033	n:40000
KS ci ratio: 1.169178e-02	ci left: 7.332088e-01	ci right 7.418567e-01	k: 29502	n:40000
SOX6   40000 perm   7 sec   (5362 perm/sec)   p_kst 7.375500e-01   p_cons 2.582500e-02   p_joint 1.806500e-01

Joint ci ratio: 3.738664e-02	ci left: 1.768595e-01	ci right 1.836176e-01	k: 9011	n:50000
Cons ci ratio: 1.072552e-01	ci left: 2.462272e-02	ci right 2.743268e-02	k: 1300	n:50000
KS ci ratio: 1.047664e-02	ci left: 7.329566e-01	ci right 7.406959e-01	k: 36842	n:50000
SOX6   50000 perm   10 sec   (5212 perm/sec)   p_kst 7.368400e-01   p_cons 2.600000e-02   p_joint 1.802200e-01

Joint ci ratio: 3.090280e-02	ci left: 2.081884e-01	ci right 2.147396e-01	k: 12687	n:60000
Cons ci ratio: 9.889680e-02	ci left: 2.425331e-02	ci right 2.679286e-02	k: 1530	n:60000
KS ci ratio: 1.003093e-02	ci left: 7.143138e-01	ci right 7.215318e-01	k: 43076	n:60000
SOX6   60000 perm   12 sec   (5098 perm/sec)   p_kst 7.179333e-01   p_cons 2.550000e-02   p_joint 2.114500e-01

Outputting figure to mutsig2_images.part000000000164/SOX6.7_2641_60000_0.71793_0.0255_0.21145.png
                gene_name: SOX6
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.21 

Current progress: 27 percent done.
SP140
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.093336e-02	ci left: 4.684669e-01	ci right 4.881457e-01	k: 4783	n:10000
KS ci ratio: 1.312124e-02	ci left: 8.932351e-01	ci right 9.051312e-01	k: 8993	n:10000
SP140   10000 perm   2 sec   (5619 perm/sec)   p_kst 8.993000e-01   p_cons 4.783000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SP140.7_2829_10000_0.8993_0.4783_1.png
                gene_name: SP140
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
SNX14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.166482e-02	ci left: 2.788403e-01	ci right 2.966835e-01	k: 2877	n:10000
Cons ci ratio: 1.078422e-01	ci left: 1.103719e-01	ci right 1.230523e-01	k: 1166	n:10000
KS ci ratio: 5.262044e-02	ci left: 3.474035e-01	ci right 3.662799e-01	k: 3568	n:10000
SNX14   10000 perm   2 sec   (5493 perm/sec)   p_kst 3.568000e-01   p_cons 1.166000e-01   p_joint 2.877000e-01

Joint ci ratio: 4.204020e-02	ci left: 2.965853e-01	ci right 3.093720e-01	k: 6059	n:20000
Cons ci ratio: 7.498993e-02	ci left: 1.156744e-01	ci right 1.247364e-01	k: 2403	n:20000
KS ci ratio: 3.709093e-02	ci left: 3.516506e-01	ci right 3.649906e-01	k: 7166	n:20000
SNX14   20000 perm   4 sec   (5061 perm/sec)   p_kst 3.583000e-01   p_cons 1.201500e-01   p_joint 3.029500e-01

Outputting figure to mutsig2_images.part000000000164/SNX14.6_2957_20000_0.3583_0.12015_0.30295.png
                gene_name: SNX14
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 31 percent done.
SOX30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.090944e-02	ci left: 1.823522e-01	ci right 1.978288e-01	k: 1900	n:10000
Cons ci ratio: 9.918053e-02	ci left: 1.283593e-01	ci right 1.418540e-01	k: 1350	n:10000
KS ci ratio: 6.494961e-02	ci left: 2.582492e-01	ci right 2.756868e-01	k: 2669	n:10000
SOX30   10000 perm   2 sec   (6640 perm/sec)   p_kst 2.669000e-01   p_cons 1.350000e-01   p_joint 1.900000e-01

Outputting figure to mutsig2_images.part000000000164/SOX30.6_2282_10000_0.2669_0.135_0.19.png
                gene_name: SOX30
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 33 percent done.
SNW1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.606556e-02	ci left: 1.643550e-01	ci right 1.792367e-01	k: 1717	n:10000
Cons ci ratio: 1.458093e-01	ci left: 6.246605e-02	ci right 7.238775e-02	k: 673	n:10000
KS ci ratio: 5.911754e-02	ci left: 2.962815e-01	ci right 3.144321e-01	k: 3053	n:10000
SNW1   10000 perm   1 sec   (6938 perm/sec)   p_kst 3.053000e-01   p_cons 6.730000e-02   p_joint 1.717000e-01

Joint ci ratio: 7.007247e-02	ci left: 1.305386e-01	ci right 1.400677e-01	k: 2705	n:20000
Cons ci ratio: 1.029413e-01	ci left: 6.410982e-02	ci right 7.111653e-02	k: 1351	n:20000
KS ci ratio: 4.218996e-02	ci left: 2.950945e-01	ci right 3.078633e-01	k: 6029	n:20000
SNW1   20000 perm   3 sec   (6176 perm/sec)   p_kst 3.014500e-01   p_cons 6.755000e-02   p_joint 1.352500e-01

Joint ci ratio: 5.908855e-02	ci left: 1.241402e-01	ci right 1.317320e-01	k: 3837	n:30000
Cons ci ratio: 8.278910e-02	ci left: 6.664747e-02	ci right 7.243623e-02	k: 2085	n:30000
KS ci ratio: 3.473916e-02	ci left: 2.927611e-01	ci right 3.031447e-01	k: 8938	n:30000
SNW1   30000 perm   5 sec   (5872 perm/sec)   p_kst 2.979333e-01   p_cons 6.950000e-02   p_joint 1.279000e-01

Outputting figure to mutsig2_images.part000000000164/SNW1.5_1667_30000_0.29793_0.0695_0.1279.png
                gene_name: SNW1
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 35 percent done.
SNX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.127250e-02	ci left: 3.593329e-01	ci right 3.783435e-01	k: 3688	n:10000
Cons ci ratio: 1.126343e-02	ci left: 9.184254e-01	ci right 9.289262e-01	k: 9238	n:10000
KS ci ratio: 7.681687e-02	ci left: 1.986025e-01	ci right 2.145687e-01	k: 2065	n:10000
SNX2   10000 perm   2 sec   (6300 perm/sec)   p_kst 2.065000e-01   p_cons 9.238000e-01   p_joint 3.688000e-01

Outputting figure to mutsig2_images.part000000000164/SNX2.5_1620_10000_0.2065_0.9238_0.3688.png
                gene_name: SNX2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 36 percent done.
SORBS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.017199e-01	ci left: 1.226845e-01	ci right 1.359322e-01	k: 1292	n:10000
Cons ci ratio: 1.550139e-01	ci left: 5.542402e-02	ci right 6.483425e-02	k: 600	n:10000
KS ci ratio: 3.922548e-02	ci left: 4.897515e-01	ci right 5.094487e-01	k: 4996	n:10000
SORBS2   10000 perm   2 sec   (5757 perm/sec)   p_kst 4.996000e-01   p_cons 6.000000e-02   p_joint 1.292000e-01

Joint ci ratio: 7.207218e-02	ci left: 1.241867e-01	ci right 1.335215e-01	k: 2576	n:20000
Cons ci ratio: 1.116540e-01	ci left: 5.479998e-02	ci right 6.132925e-02	k: 1160	n:20000
KS ci ratio: 2.718669e-02	ci left: 5.026958e-01	ci right 5.166014e-01	k: 10193	n:20000
SORBS2   20000 perm   4 sec   (5204 perm/sec)   p_kst 5.096500e-01   p_cons 5.800000e-02   p_joint 1.288000e-01

Joint ci ratio: 6.216379e-02	ci left: 1.133834e-01	ci right 1.206909e-01	k: 3510	n:30000
Cons ci ratio: 9.035612e-02	ci left: 5.635984e-02	ci right 6.172595e-02	k: 1770	n:30000
KS ci ratio: 2.211047e-02	ci left: 5.059594e-01	ci right 5.173050e-01	k: 15349	n:30000
SORBS2   30000 perm   6 sec   (5010 perm/sec)   p_kst 5.116333e-01   p_cons 5.900000e-02   p_joint 1.170000e-01

Outputting figure to mutsig2_images.part000000000164/SORBS2.5_4491_30000_0.51163_0.059_0.117.png
                gene_name: SORBS2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 38 percent done.
SORCS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.230215e-02	ci left: 1.772353e-01	ci right 1.925487e-01	k: 1848	n:10000
Cons ci ratio: 8.636922e-02	ci left: 1.633724e-01	ci right 1.782199e-01	k: 1707	n:10000
KS ci ratio: 8.531708e-02	ci left: 1.668119e-01	ci right 1.817783e-01	k: 1742	n:10000
SORCS2   10000 perm   2 sec   (6154 perm/sec)   p_kst 1.742000e-01   p_cons 1.707000e-01   p_joint 1.848000e-01

Outputting figure to mutsig2_images.part000000000164/SORCS2.5_3588_10000_0.1742_0.1707_0.1848.png
                gene_name: SORCS2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 40 percent done.
SNX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.602861e-02	ci left: 2.519183e-01	ci right 2.692214e-01	k: 2605	n:10000
Cons ci ratio: 1.098941e-02	ci left: 9.219324e-01	ci right 9.322172e-01	k: 9272	n:10000
KS ci ratio: 9.141929e-02	ci left: 1.481542e-01	ci right 1.624472e-01	k: 1552	n:10000
SNX1   10000 perm   1 sec   (7063 perm/sec)   p_kst 1.552000e-01   p_cons 9.272000e-01   p_joint 2.605000e-01

Outputting figure to mutsig2_images.part000000000164/SNX1.4_1629_10000_0.1552_0.9272_0.2605.png
                gene_name: SNX1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 42 percent done.
SNX31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.711277e-02	ci left: 1.332547e-01	ci right 1.469557e-01	k: 1400	n:10000
Cons ci ratio: 2.951228e-02	ci left: 6.286928e-01	ci right 6.476267e-01	k: 6382	n:10000
KS ci ratio: 1.472195e-01	ci left: 6.130724e-02	ci right 7.114729e-02	k: 661	n:10000
SNX31   10000 perm   1 sec   (6694 perm/sec)   p_kst 6.610000e-02   p_cons 6.382000e-01   p_joint 1.400000e-01

Joint ci ratio: 8.007495e-02	ci left: 1.026992e-01	ci right 1.113154e-01	k: 2139	n:20000
Cons ci ratio: 2.090996e-02	ci left: 6.305923e-01	ci right 6.439678e-01	k: 12746	n:20000
KS ci ratio: 1.031871e-01	ci left: 6.381704e-02	ci right 7.080940e-02	k: 1345	n:20000
SNX31   20000 perm   3 sec   (6033 perm/sec)   p_kst 6.725000e-02   p_cons 6.373000e-01   p_joint 1.069500e-01

Joint ci ratio: 6.150109e-02	ci left: 1.155866e-01	ci right 1.229540e-01	k: 3577	n:30000
Cons ci ratio: 1.706455e-02	ci left: 6.320639e-01	ci right 6.429761e-01	k: 19126	n:30000
KS ci ratio: 8.486246e-02	ci left: 6.357533e-02	ci right 6.924233e-02	k: 1991	n:30000
SNX31   30000 perm   5 sec   (5756 perm/sec)   p_kst 6.636667e-02   p_cons 6.375333e-01   p_joint 1.192333e-01

Outputting figure to mutsig2_images.part000000000164/SNX31.4_1379_30000_0.066367_0.63753_0.11923.png
                gene_name: SNX31
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 44 percent done.
SNX33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.063929e-02	ci left: 4.720631e-01	ci right 4.917475e-01	k: 4819	n:10000
Cons ci ratio: 3.743116e-02	ci left: 5.131551e-01	ci right 5.328315e-01	k: 5230	n:10000
KS ci ratio: 4.815110e-02	ci left: 3.888849e-01	ci right 4.081742e-01	k: 3985	n:10000
SNX33   10000 perm   2 sec   (6614 perm/sec)   p_kst 3.985000e-01   p_cons 5.230000e-01   p_joint 4.819000e-01

Outputting figure to mutsig2_images.part000000000164/SNX33.4_1733_10000_0.3985_0.523_0.4819.png
                gene_name: SNX33
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 45 percent done.
SOCS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.367280e-02	ci left: 4.363242e-01	ci right 4.559072e-01	k: 4461	n:10000
Cons ci ratio: 3.130776e-02	ci left: 6.008614e-01	ci right 6.200742e-01	k: 6105	n:10000
KS ci ratio: 5.802118e-02	ci left: 3.042144e-01	ci right 3.224944e-01	k: 3133	n:10000
SOCS5   10000 perm   1 sec   (7092 perm/sec)   p_kst 3.133000e-01   p_cons 6.105000e-01   p_joint 4.461000e-01

Outputting figure to mutsig2_images.part000000000164/SOCS5.4_1615_10000_0.3133_0.6105_0.4461.png
                gene_name: SOCS5
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 47 percent done.
SOD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.091696e-02	ci left: 4.686667e-01	ci right 4.883458e-01	k: 4785	n:10000
Cons ci ratio: 4.137052e-02	ci left: 4.631735e-01	ci right 4.828422e-01	k: 4730	n:10000
KS ci ratio: 6.025129e-02	ci left: 2.883517e-01	ci right 3.063665e-01	k: 2973	n:10000
SOD2   10000 perm   1 sec   (6738 perm/sec)   p_kst 2.973000e-01   p_cons 4.730000e-01   p_joint 4.785000e-01

Outputting figure to mutsig2_images.part000000000164/SOD2.4_689_10000_0.2973_0.473_0.4785.png
                gene_name: SOD2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 49 percent done.
SP100
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.155892e-02	ci left: 1.477618e-01	ci right 1.620398e-01	k: 1548	n:10000
Cons ci ratio: 4.270515e-02	ci left: 4.473998e-01	ci right 4.670251e-01	k: 4572	n:10000
KS ci ratio: 1.202174e-01	ci left: 9.029438e-02	ci right 1.019421e-01	k: 960	n:10000
SP100   10000 perm   2 sec   (6004 perm/sec)   p_kst 9.600000e-02   p_cons 4.572000e-01   p_joint 1.548000e-01

Joint ci ratio: 6.149698e-02	ci left: 1.636322e-01	ci right 1.740643e-01	k: 3376	n:20000
Cons ci ratio: 2.920004e-02	ci left: 4.670091e-01	ci right 4.808985e-01	k: 9479	n:20000
KS ci ratio: 8.392559e-02	ci left: 9.420749e-02	ci right 1.025097e-01	k: 1966	n:20000
SP100   20000 perm   4 sec   (5366 perm/sec)   p_kst 9.830000e-02   p_cons 4.739500e-01   p_joint 1.688000e-01

Outputting figure to mutsig2_images.part000000000164/SP100.4_3324_20000_0.0983_0.47395_0.1688.png
                gene_name: SP100
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 51 percent done.
SNX22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.353182e-02	ci left: 1.423679e-01	ci right 1.564370e-01	k: 1493	n:10000
Cons ci ratio: 5.384612e-02	ci left: 3.369706e-01	ci right 3.557190e-01	k: 3463	n:10000
KS ci ratio: 1.092784e-01	ci left: 1.077365e-01	ci right 1.202894e-01	k: 1139	n:10000
SNX22   10000 perm   1 sec   (7787 perm/sec)   p_kst 1.139000e-01   p_cons 3.463000e-01   p_joint 1.493000e-01

Joint ci ratio: 6.416797e-02	ci left: 1.521806e-01	ci right 1.623193e-01	k: 3144	n:20000
Cons ci ratio: 3.774510e-02	ci left: 3.436855e-01	ci right 3.569580e-01	k: 7006	n:20000
KS ci ratio: 7.712032e-02	ci left: 1.099708e-01	ci right 1.188416e-01	k: 2287	n:20000
SNX22   20000 perm   3 sec   (6640 perm/sec)   p_kst 1.143500e-01   p_cons 3.503000e-01   p_joint 1.572000e-01

Outputting figure to mutsig2_images.part000000000164/SNX22.3_610_20000_0.11435_0.3503_0.1572.png
                gene_name: SNX22
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 53 percent done.
SNX32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.445662e-02	ci left: 7.108847e-01	ci right 7.285871e-01	k: 7198	n:10000
Cons ci ratio: 2.715515e-02	ci left: 6.664250e-01	ci right 6.848726e-01	k: 6757	n:10000
KS ci ratio: 3.982620e-02	ci left: 4.821550e-01	ci right 5.018497e-01	k: 4920	n:10000
SNX32   10000 perm   1 sec   (6872 perm/sec)   p_kst 4.920000e-01   p_cons 6.757000e-01   p_joint 7.198000e-01

Outputting figure to mutsig2_images.part000000000164/SNX32.3_1264_10000_0.492_0.6757_0.7198.png
                gene_name: SNX32
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 55 percent done.
SNX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.546557e-02	ci left: 1.663205e-01	ci right 1.812701e-01	k: 1737	n:10000
Cons ci ratio: 9.554179e-03	ci left: 9.393127e-01	ci right 9.484265e-01	k: 9440	n:10000
KS ci ratio: 2.131928e-01	ci left: 2.920604e-02	ci right 3.626959e-02	k: 326	n:10000
SNX7   10000 perm   1 sec   (7322 perm/sec)   p_kst 3.260000e-02   p_cons 9.440000e-01   p_joint 1.737000e-01

Joint ci ratio: 7.367235e-02	ci left: 1.194130e-01	ci right 1.285966e-01	k: 2479	n:20000
Cons ci ratio: 6.807580e-03	ci left: 9.398509e-01	ci right 9.463195e-01	k: 18863	n:20000
KS ci ratio: 1.500435e-01	ci left: 3.051917e-02	ci right 3.551780e-02	k: 659	n:20000
SNX7   20000 perm   3 sec   (6407 perm/sec)   p_kst 3.295000e-02   p_cons 9.431500e-01   p_joint 1.239500e-01

Joint ci ratio: 5.331138e-02	ci left: 1.486138e-01	ci right 1.567869e-01	k: 4580	n:30000
Cons ci ratio: 5.532660e-03	ci left: 9.409636e-01	ci right 9.462167e-01	k: 28309	n:30000
KS ci ratio: 1.232207e-01	ci left: 3.061915e-02	ci right 3.467202e-02	k: 978	n:30000
SNX7   30000 perm   5 sec   (6024 perm/sec)   p_kst 3.260000e-02   p_cons 9.436333e-01   p_joint 1.526667e-01

Joint ci ratio: 5.437861e-02	ci left: 1.118398e-01	ci right 1.181163e-01	k: 4598	n:40000
Cons ci ratio: 4.747478e-03	ci left: 9.423132e-01	ci right 9.468220e-01	k: 37784	n:40000
KS ci ratio: 1.059735e-01	ci left: 3.131958e-02	ci right 3.484863e-02	k: 1322	n:40000
SNX7   40000 perm   7 sec   (5787 perm/sec)   p_kst 3.305000e-02   p_cons 9.446000e-01   p_joint 1.149500e-01

Joint ci ratio: 5.745086e-02	ci left: 8.272759e-02	ci right 8.764070e-02	k: 4258	n:50000
Cons ci ratio: 4.252610e-03	ci left: 9.423962e-01	ci right 9.464320e-01	k: 47222	n:50000
KS ci ratio: 9.543683e-02	ci left: 3.108013e-02	ci right 3.421444e-02	k: 1631	n:50000
SNX7   50000 perm   9 sec   (5548 perm/sec)   p_kst 3.262000e-02   p_cons 9.444400e-01   p_joint 8.516000e-02

Outputting figure to mutsig2_images.part000000000164/SNX7.3_1392_50000_0.03262_0.94444_0.08516.png
                gene_name: SNX7
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.088 

Current progress: 56 percent done.
SOBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.831127e-02	ci left: 8.132417e-01	ci right 8.283709e-01	k: 8209	n:10000
Cons ci ratio: 6.198219e-02	ci left: 2.767603e-01	ci right 2.945647e-01	k: 2856	n:10000
KS ci ratio: 4.255064e-02	ci left: 4.491963e-01	ci right 4.688276e-01	k: 4590	n:10000
SOBP   10000 perm   2 sec   (6434 perm/sec)   p_kst 4.590000e-01   p_cons 2.856000e-01   p_joint 8.209000e-01

Outputting figure to mutsig2_images.part000000000164/SOBP.3_2646_10000_0.459_0.2856_0.8209.png
                gene_name: SOBP
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 58 percent done.
SOCS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.484940e-02	ci left: 4.232593e-01	ci right 4.427798e-01	k: 4330	n:10000
Cons ci ratio: 9.258663e-02	ci left: 1.449173e-01	ci right 1.590860e-01	k: 1519	n:10000
KS ci ratio: 4.025877e-02	ci left: 4.767588e-01	ci right 4.964490e-01	k: 4866	n:10000
SOCS2   10000 perm   1 sec   (7711 perm/sec)   p_kst 4.866000e-01   p_cons 1.519000e-01   p_joint 4.330000e-01

Outputting figure to mutsig2_images.part000000000164/SOCS2.3_605_10000_0.4866_0.1519_0.433.png
                gene_name: SOCS2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 60 percent done.
SORBS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.829005e-02	ci left: 6.481042e-01	ci right 6.668040e-01	k: 6575	n:10000
Cons ci ratio: 7.110101e-02	ci left: 2.247431e-01	ci right 2.414127e-01	k: 2330	n:10000
KS ci ratio: 1.055229e-02	ci left: 9.274055e-01	ci right 9.373408e-01	k: 9325	n:10000
SORBS3   10000 perm   1 sec   (6741 perm/sec)   p_kst 9.325000e-01   p_cons 2.330000e-01   p_joint 6.575000e-01

Outputting figure to mutsig2_images.part000000000164/SORBS3.3_2096_10000_0.9325_0.233_0.6575.png
                gene_name: SORBS3
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 62 percent done.
SOX10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.880739e-02	ci left: 8.051156e-01	ci right 8.205017e-01	k: 8129	n:10000
Cons ci ratio: 2.843462e-02	ci left: 6.457901e-01	ci right 6.645195e-01	k: 6552	n:10000
KS ci ratio: 3.441262e-02	ci left: 5.549149e-01	ci right 5.744474e-01	k: 5647	n:10000
SOX10   10000 perm   1 sec   (7709 perm/sec)   p_kst 5.647000e-01   p_cons 6.552000e-01   p_joint 8.129000e-01

Outputting figure to mutsig2_images.part000000000164/SOX10.3_1413_10000_0.5647_0.6552_0.8129.png
                gene_name: SOX10
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 64 percent done.
SOX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.533157e-02	ci left: 5.418888e-01	ci right 5.614810e-01	k: 5517	n:10000
Cons ci ratio: 2.075816e-02	ci left: 7.727630e-01	ci right 7.890731e-01	k: 7810	n:10000
KS ci ratio: 5.256318e-02	ci left: 3.479005e-01	ci right 3.667827e-01	k: 3573	n:10000
SOX7   10000 perm   1 sec   (7073 perm/sec)   p_kst 3.573000e-01   p_cons 7.810000e-01   p_joint 5.517000e-01

Outputting figure to mutsig2_images.part000000000164/SOX7.3_1175_10000_0.3573_0.781_0.5517.png
                gene_name: SOX7
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 65 percent done.
SP140L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.205220e-02	ci left: 3.523733e-01	ci right 3.713072e-01	k: 3618	n:10000
Cons ci ratio: 4.758343e-02	ci left: 3.945608e-01	ci right 4.138950e-01	k: 4042	n:10000
KS ci ratio: 5.151560e-02	ci left: 3.571454e-01	ci right 3.761324e-01	k: 3666	n:10000
SP140L   10000 perm   2 sec   (6578 perm/sec)   p_kst 3.666000e-01   p_cons 4.042000e-01   p_joint 3.618000e-01

Outputting figure to mutsig2_images.part000000000164/SP140L.3_1819_10000_0.3666_0.4042_0.3618.png
                gene_name: SP140L
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 67 percent done.
SP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.200770e-02	ci left: 2.203008e-01	ci right 2.368576e-01	k: 2285	n:10000
Cons ci ratio: 1.232190e-01	ci left: 8.621021e-02	ci right 9.762881e-02	k: 918	n:10000
KS ci ratio: 3.227051e-02	ci left: 5.863057e-01	ci right 6.056384e-01	k: 5960	n:10000
SP3   10000 perm   1 sec   (7172 perm/sec)   p_kst 5.960000e-01   p_cons 9.180000e-02   p_joint 2.285000e-01

Joint ci ratio: 5.499856e-02	ci left: 1.969491e-01	ci right 2.081375e-01	k: 4050	n:20000
Cons ci ratio: 9.088334e-02	ci left: 8.121946e-02	ci right 8.900166e-02	k: 1701	n:20000
KS ci ratio: 2.295286e-02	ci left: 5.863538e-01	ci right 6.000191e-01	k: 11864	n:20000
SP3   20000 perm   3 sec   (6335 perm/sec)   p_kst 5.932000e-01   p_cons 8.505000e-02   p_joint 2.025000e-01

Outputting figure to mutsig2_images.part000000000164/SP3.3_2374_20000_0.5932_0.08505_0.2025.png
                gene_name: SP3
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 69 percent done.
SP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.406212e-01	ci left: 6.700893e-02	ci right 7.724202e-02	k: 720	n:10000
Cons ci ratio: 1.322110e-01	ci left: 7.543425e-02	ci right 8.621143e-02	k: 807	n:10000
KS ci ratio: 8.028430e-02	ci left: 1.847145e-01	ci right 2.002650e-01	k: 1924	n:10000
SP4   10000 perm   1 sec   (6693 perm/sec)   p_kst 1.924000e-01   p_cons 8.070000e-02   p_joint 7.200000e-02

Joint ci ratio: 9.374186e-02	ci left: 7.661884e-02	ci right 8.420368e-02	k: 1607	n:20000
Cons ci ratio: 9.292732e-02	ci left: 7.789098e-02	ci right 8.553115e-02	k: 1633	n:20000
KS ci ratio: 5.592626e-02	ci left: 1.916556e-01	ci right 2.027326e-01	k: 3943	n:20000
SP4   20000 perm   3 sec   (5966 perm/sec)   p_kst 1.971500e-01   p_cons 8.165000e-02   p_joint 8.035000e-02

Outputting figure to mutsig2_images.part000000000164/SP4.3_2379_20000_0.19715_0.08165_0.08035.png
                gene_name: SP4
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.077 
    ci_joint_bounds_right: 0.084 

Current progress: 71 percent done.
SP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.882749e-02	ci left: 4.948504e-01	ci right 5.145468e-01	k: 5047	n:10000
Cons ci ratio: 1.113846e-01	ci left: 1.040292e-01	ci right 1.163989e-01	k: 1101	n:10000
KS ci ratio: 3.162458e-02	ci left: 5.960420e-01	ci right 6.152964e-01	k: 6057	n:10000
SP7   10000 perm   1 sec   (7128 perm/sec)   p_kst 6.057000e-01   p_cons 1.101000e-01   p_joint 5.047000e-01

Joint ci ratio: 4.295861e-02	ci left: 2.875919e-01	ci right 3.002681e-01	k: 5878	n:20000
Cons ci ratio: 7.852226e-02	ci left: 1.064325e-01	ci right 1.151810e-01	k: 2215	n:20000
KS ci ratio: 2.242170e-02	ci left: 5.976336e-01	ci right 6.112360e-01	k: 12089	n:20000
SP7   20000 perm   3 sec   (6392 perm/sec)   p_kst 6.044500e-01   p_cons 1.107500e-01   p_joint 2.939000e-01

Outputting figure to mutsig2_images.part000000000164/SP7.3_1304_20000_0.60445_0.11075_0.2939.png
                gene_name: SP7
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 73 percent done.
SNX11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.257745e-02	ci left: 7.423010e-01	ci right 7.593527e-01	k: 7509	n:10000
Cons ci ratio: 1.429301e-02	ci left: 8.762316e-01	ci right 8.889446e-01	k: 8827	n:10000
KS ci ratio: 6.030900e-02	ci left: 2.879553e-01	ci right 3.059631e-01	k: 2969	n:10000
SNX11   10000 perm   1 sec   (7871 perm/sec)   p_kst 2.969000e-01   p_cons 8.827000e-01   p_joint 7.509000e-01

Outputting figure to mutsig2_images.part000000000164/SNX11.2_837_10000_0.2969_0.8827_0.7509.png
                gene_name: SNX11
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 75 percent done.
SNX17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.312847e-02	ci left: 8.931325e-01	ci right 9.050339e-01	k: 8992	n:10000
Cons ci ratio: 8.867088e-03	ci left: 9.470021e-01	ci right 9.555325e-01	k: 9514	n:10000
KS ci ratio: 5.932719e-02	ci left: 2.947944e-01	ci right 3.129200e-01	k: 3038	n:10000
SNX17   10000 perm   1 sec   (7684 perm/sec)   p_kst 3.038000e-01   p_cons 9.514000e-01   p_joint 8.992000e-01

Outputting figure to mutsig2_images.part000000000164/SNX17.2_1473_10000_0.3038_0.9514_0.8992.png
                gene_name: SNX17
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 76 percent done.
SNX27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.705486e-02	ci left: 2.460841e-01	ci right 2.632590e-01	k: 2546	n:10000
Cons ci ratio: 5.242615e-02	ci left: 3.490931e-01	ci right 3.679893e-01	k: 3585	n:10000
KS ci ratio: 1.717671e-01	ci left: 4.523448e-02	ci right 5.383036e-02	k: 494	n:10000
SNX27   10000 perm   1 sec   (7361 perm/sec)   p_kst 4.940000e-02   p_cons 3.585000e-01   p_joint 2.546000e-01

Joint ci ratio: 3.076242e-02	ci left: 4.411410e-01	ci right 4.549742e-01	k: 8961	n:20000
Cons ci ratio: 3.834976e-02	ci left: 3.365187e-01	ci right 3.497269e-01	k: 6862	n:20000
KS ci ratio: 1.204400e-01	ci left: 4.726291e-02	ci right 5.336867e-02	k: 1005	n:20000
SNX27   20000 perm   3 sec   (6494 perm/sec)   p_kst 5.025000e-02   p_cons 3.431000e-01   p_joint 4.480500e-01

Joint ci ratio: 2.639334e-02	ci left: 4.180993e-01	ci right 4.293155e-01	k: 12711	n:30000
Cons ci ratio: 3.149505e-02	ci left: 3.351367e-01	ci right 3.458942e-01	k: 10215	n:30000
KS ci ratio: 9.739180e-02	ci left: 4.873281e-02	ci right 5.375454e-02	k: 1536	n:30000
SNX27   30000 perm   5 sec   (6196 perm/sec)   p_kst 5.120000e-02   p_cons 3.405000e-01   p_joint 4.237000e-01

Outputting figure to mutsig2_images.part000000000164/SNX27.2_1635_30000_0.0512_0.3405_0.4237.png
                gene_name: SNX27
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 78 percent done.
SNX9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.248092e-02	ci left: 7.439188e-01	ci right 7.609339e-01	k: 7525	n:10000
KS ci ratio: 9.581213e-03	ci left: 9.390015e-01	ci right 9.481380e-01	k: 9437	n:10000
SNX9   10000 perm   1 sec   (7273 perm/sec)   p_kst 9.437000e-01   p_cons 7.525000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SNX9.2_1860_10000_0.9437_0.7525_1.png
                gene_name: SNX9
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
SOCS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.908968e-02	ci left: 2.964797e-01	ci right 3.146337e-01	k: 3055	n:10000
KS ci ratio: 6.075972e-02	ci left: 2.848834e-01	ci right 3.028368e-01	k: 2938	n:10000
SOCS6   10000 perm   1 sec   (7703 perm/sec)   p_kst 2.938000e-01   p_cons 3.055000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SOCS6.2_1612_10000_0.2938_0.3055_1.png
                gene_name: SOCS6
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
SORD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.037047e-03	ci left: 9.874126e-01	ci right 9.914948e-01	k: 9896	n:10000
Cons ci ratio: 1.484236e-01	ci left: 6.034192e-02	ci right 7.011322e-02	k: 651	n:10000
KS ci ratio: 1.616482e-02	ci left: 8.476398e-01	ci right 8.615529e-01	k: 8547	n:10000
SORD   10000 perm   1 sec   (7675 perm/sec)   p_kst 8.547000e-01   p_cons 6.510000e-02   p_joint 9.896000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.050830e-01	ci left: 6.162181e-02	ci right 6.850530e-02	k: 1300	n:20000
KS ci ratio: 1.137652e-02	ci left: 8.509054e-01	ci right 8.606909e-01	k: 17117	n:20000
SORD   20000 perm   3 sec   (6789 perm/sec)   p_kst 8.558500e-01   p_cons 6.500000e-02   p_joint 1

Joint ci ratio: 1.029125e-02	ci left: 8.243544e-01	ci right 8.329152e-01	k: 24860	n:30000
Cons ci ratio: 8.602466e-02	ci left: 6.194193e-02	ci right 6.754272e-02	k: 1941	n:30000
KS ci ratio: 9.208867e-03	ci left: 8.539652e-01	ci right 8.618987e-01	k: 25739	n:30000
SORD   30000 perm   5 sec   (6446 perm/sec)   p_kst 8.579667e-01   p_cons 6.470000e-02   p_joint 8.286667e-01

Outputting figure to mutsig2_images.part000000000164/SORD.2_1110_30000_0.85797_0.0647_0.82867.png
                gene_name: SORD
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 84 percent done.
SOST
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.303999e-02	ci left: 5.748680e-01	ci right 5.942827e-01	k: 5846	n:10000
Cons ci ratio: 2.552671e-02	ci left: 6.931293e-01	ci right 7.111528e-01	k: 7022	n:10000
KS ci ratio: 1.303765e-01	ci left: 7.747081e-02	ci right 8.837361e-02	k: 828	n:10000
SOST   10000 perm   1 sec   (8032 perm/sec)   p_kst 8.280000e-02   p_cons 7.022000e-01   p_joint 5.846000e-01

Joint ci ratio: 3.375828e-02	ci left: 3.958427e-01	ci right 4.094857e-01	k: 8053	n:20000
Cons ci ratio: 1.811750e-02	ci left: 6.942491e-01	ci right 7.069925e-01	k: 14013	n:20000
KS ci ratio: 9.240486e-02	ci left: 7.872292e-02	ci right 8.639896e-02	k: 1650	n:20000
SOST   20000 perm   3 sec   (7108 perm/sec)   p_kst 8.250000e-02   p_cons 7.006500e-01   p_joint 4.026500e-01

Outputting figure to mutsig2_images.part000000000164/SOST.2_650_20000_0.0825_0.70065_0.40265.png
                gene_name: SOST
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 85 percent done.
SOX13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.409237e-03	ci left: 9.852332e-01	ci right 9.896760e-01	k: 9876	n:10000
Cons ci ratio: 3.028360e-02	ci left: 6.166318e-01	ci right 6.356946e-01	k: 6262	n:10000
KS ci ratio: 3.526734e-02	ci left: 5.427904e-01	ci right 5.623789e-01	k: 5526	n:10000
SOX13   10000 perm   1 sec   (7138 perm/sec)   p_kst 5.526000e-01   p_cons 6.262000e-01   p_joint 9.876000e-01

Outputting figure to mutsig2_images.part000000000164/SOX13.2_1921_10000_0.5526_0.6262_0.9876.png
                gene_name: SOX13
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 87 percent done.
SOX14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.362230e-02	ci left: 8.860594e-01	ci right 8.983110e-01	k: 8923	n:10000
KS ci ratio: 9.706602e-03	ci left: 9.375495e-01	ci right 9.467908e-01	k: 9423	n:10000
SOX14   10000 perm   1 sec   (8315 perm/sec)   p_kst 9.423000e-01   p_cons 8.923000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000164/SOX14.2_727_10000_0.9423_0.8923_1.png
                gene_name: SOX14
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
SOX17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.090057e-02	ci left: 4.688665e-01	ci right 4.885459e-01	k: 4787	n:10000
Cons ci ratio: 6.244088e-02	ci left: 2.737893e-01	ci right 2.915374e-01	k: 2826	n:10000
KS ci ratio: 1.379167e-02	ci left: 8.836011e-01	ci right 8.959708e-01	k: 8899	n:10000
SOX17   10000 perm   1 sec   (7486 perm/sec)   p_kst 8.899000e-01   p_cons 2.826000e-01   p_joint 4.787000e-01

Outputting figure to mutsig2_images.part000000000164/SOX17.2_1253_10000_0.8899_0.2826_0.4787.png
                gene_name: SOX17
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 91 percent done.
SOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.977048e-02	ci left: 4.828546e-01	ci right 5.025497e-01	k: 4927	n:10000
Cons ci ratio: 6.809499e-02	ci left: 2.403508e-01	ci right 2.573957e-01	k: 2488	n:10000
KS ci ratio: 3.190330e-02	ci left: 5.918258e-01	ci right 6.111151e-01	k: 6015	n:10000
SOX2   10000 perm   1 sec   (8165 perm/sec)   p_kst 6.015000e-01   p_cons 2.488000e-01   p_joint 4.927000e-01

Outputting figure to mutsig2_images.part000000000164/SOX2.2_958_10000_0.6015_0.2488_0.4927.png
                gene_name: SOX2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 93 percent done.
SOX21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
Cons ci ratio: 1.234410e-01	ci left: 8.591861e-02	ci right 9.732058e-02	k: 915	n:10000
KS ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
SOX21   10000 perm   1 sec   (7953 perm/sec)   p_kst 2.100000e-03   p_cons 9.150000e-02   p_joint 3.900000e-03

Joint ci ratio: 7.538762e-01	ci left: 8.493734e-04	ci right 1.904225e-03	k: 26	n:20000
Cons ci ratio: 8.726152e-02	ci left: 8.763679e-02	ci right 9.568239e-02	k: 1832	n:20000
KS ci ratio: 5.711043e-01	ci left: 1.684366e-03	ci right 3.066699e-03	k: 46	n:20000
SOX21   20000 perm   3 sec   (7021 perm/sec)   p_kst 2.300000e-03   p_cons 9.160000e-02   p_joint 1.300000e-03

Joint ci ratio: 7.684293e-01	ci left: 5.393597e-04	ci right 1.229920e-03	k: 25	n:30000
Cons ci ratio: 7.131347e-02	ci left: 8.822763e-02	ci right 9.478506e-02	k: 2744	n:30000
KS ci ratio: 4.894689e-01	ci left: 1.614063e-03	ci right 2.686024e-03	k: 63	n:30000
SOX21   30000 perm   5 sec   (6658 perm/sec)   p_kst 2.100000e-03   p_cons 9.146667e-02   p_joint 8.333333e-04

Joint ci ratio: 7.405418e-01	ci left: 4.448749e-04	ci right 9.819388e-04	k: 27	n:40000
Cons ci ratio: 6.182458e-02	ci left: 8.849455e-02	ci right 9.416494e-02	k: 3652	n:40000
KS ci ratio: 4.324423e-01	ci left: 1.608458e-03	ci right 2.516271e-03	k: 81	n:40000
SOX21   40000 perm   6 sec   (6388 perm/sec)   p_kst 2.025000e-03   p_cons 9.130000e-02   p_joint 6.750000e-04

Joint ci ratio: 5.840902e-01	ci left: 6.394799e-04	ci right 1.181181e-03	k: 44	n:50000
Cons ci ratio: 5.531936e-02	ci left: 8.872983e-02	ci right 9.379774e-02	k: 4562	n:50000
KS ci ratio: 3.699864e-01	ci left: 1.826608e-03	ci right 2.672846e-03	k: 111	n:50000
SOX21   50000 perm   8 sec   (6166 perm/sec)   p_kst 2.220000e-03   p_cons 9.124000e-02   p_joint 8.800000e-04

Joint ci ratio: 5.100853e-01	ci left: 7.341098e-04	ci right 1.249464e-03	k: 58	n:60000
Cons ci ratio: 5.050763e-02	ci left: 8.892437e-02	ci right 9.354859e-02	k: 5473	n:60000
KS ci ratio: 3.395274e-01	ci left: 1.841037e-03	ci right 2.608386e-03	k: 132	n:60000
SOX21   60000 perm   10 sec   (5951 perm/sec)   p_kst 2.200000e-03   p_cons 9.121667e-02   p_joint 9.666667e-04

Joint ci ratio: 3.575360e-01	ci left: 1.408504e-03	ci right 2.033963e-03	k: 119	n:70000
Cons ci ratio: 5.012240e-02	ci left: 7.833948e-02	ci right 8.238110e-02	k: 5624	n:70000
KS ci ratio: 3.115041e-01	ci left: 1.906053e-03	ci right 2.621922e-03	k: 157	n:70000
SOX21   70000 perm   12 sec   (5794 perm/sec)   p_kst 2.242857e-03   p_cons 8.034286e-02   p_joint 1.700000e-03

Joint ci ratio: 3.383506e-01	ci left: 1.392156e-03	ci right 1.969947e-03	k: 133	n:80000
Cons ci ratio: 4.702287e-02	ci left: 7.804251e-02	ci right 8.181302e-02	k: 6393	n:80000
KS ci ratio: 2.926648e-01	ci left: 1.910420e-03	ci right 2.576502e-03	k: 178	n:80000
SOX21   80000 perm   14 sec   (5672 perm/sec)   p_kst 2.225000e-03   p_cons 7.991250e-02   p_joint 1.662500e-03

Joint ci ratio: 3.462339e-01	ci left: 1.176511e-03	ci right 1.678730e-03	k: 127	n:90000
Cons ci ratio: 4.451293e-02	ci left: 7.756470e-02	ci right 8.110691e-02	k: 7139	n:90000
KS ci ratio: 2.761850e-01	ci left: 1.925174e-03	ci right 2.552045e-03	k: 200	n:90000
SOX21   90000 perm   16 sec   (5547 perm/sec)   p_kst 2.222222e-03   p_cons 7.932222e-02   p_joint 1.411111e-03

Joint ci ratio: 3.253006e-01	ci left: 1.214545e-03	ci right 1.695119e-03	k: 144	n:100000
Cons ci ratio: 4.208863e-02	ci left: 7.813757e-02	ci right 8.150685e-02	k: 7981	n:100000
KS ci ratio: 2.652050e-01	ci left: 1.891119e-03	ci right 2.478354e-03	k: 217	n:100000
SOX21   100000 perm   18 sec   (5442 perm/sec)   p_kst 2.170000e-03   p_cons 7.981000e-02   p_joint 1.440000e-03

Joint ci ratio: 3.116330e-01	ci left: 1.212871e-03	ci right 1.668611e-03	k: 157	n:110000
Cons ci ratio: 4.022262e-02	ci left: 7.788091e-02	ci right 8.108676e-02	k: 8742	n:110000
KS ci ratio: 2.559845e-01	ci left: 1.855150e-03	ci right 2.407990e-03	k: 233	n:110000
SOX21   110000 perm   21 sec   (5340 perm/sec)   p_kst 2.118182e-03   p_cons 7.947273e-02   p_joint 1.427273e-03

Joint ci ratio: 3.253402e-01	ci left: 1.012103e-03	ci right 1.412629e-03	k: 144	n:120000
Cons ci ratio: 3.855817e-02	ci left: 7.776894e-02	ci right 8.083476e-02	k: 9515	n:120000
KS ci ratio: 2.491658e-01	ci left: 1.802025e-03	ci right 2.322510e-03	k: 246	n:120000
SOX21   120000 perm   23 sec   (5244 perm/sec)   p_kst 2.050000e-03   p_cons 7.929167e-02   p_joint 1.200000e-03

Joint ci ratio: 3.136616e-01	ci left: 1.012081e-03	ci right 1.395342e-03	k: 155	n:130000
Cons ci ratio: 3.710809e-02	ci left: 7.758503e-02	ci right 8.052609e-02	k: 10276	n:130000
KS ci ratio: 2.396527e-01	ci left: 1.807835e-03	ci right 2.307102e-03	k: 266	n:130000
SOX21   130000 perm   25 sec   (5148 perm/sec)   p_kst 2.046154e-03   p_cons 7.904615e-02   p_joint 1.192308e-03

Joint ci ratio: 3.049906e-01	ci left: 9.990852e-04	ci right 1.364936e-03	k: 164	n:140000
Cons ci ratio: 3.575745e-02	ci left: 7.764180e-02	ci right 8.047567e-02	k: 11067	n:140000
KS ci ratio: 2.319635e-01	ci left: 1.799680e-03	ci right 2.278463e-03	k: 284	n:140000
SOX21   140000 perm   28 sec   (5057 perm/sec)   p_kst 2.028571e-03   p_cons 7.905000e-02   p_joint 1.171429e-03

Joint ci ratio: 2.936411e-01	ci left: 1.012642e-03	ci right 1.367092e-03	k: 177	n:150000
Cons ci ratio: 3.461726e-02	ci left: 7.738845e-02	ci right 8.012120e-02	k: 11812	n:150000
KS ci ratio: 2.283941e-01	ci left: 1.736235e-03	ci right 2.190029e-03	k: 293	n:150000
SOX21   150000 perm   30 sec   (4973 perm/sec)   p_kst 1.953333e-03   p_cons 7.874667e-02   p_joint 1.180000e-03

Joint ci ratio: 2.849687e-01	ci left: 1.013114e-03	ci right 1.355374e-03	k: 188	n:160000
Cons ci ratio: 3.362173e-02	ci left: 7.698820e-02	ci right 7.962711e-02	k: 12528	n:160000
KS ci ratio: 2.231469e-01	ci left: 1.710269e-03	ci right 2.145596e-03	k: 307	n:160000
SOX21   160000 perm   33 sec   (4893 perm/sec)   p_kst 1.918750e-03   p_cons 7.830000e-02   p_joint 1.175000e-03

Joint ci ratio: 2.299932e-01	ci left: 1.509772e-03	ci right 1.907530e-03	k: 289	n:170000
Cons ci ratio: 3.260334e-02	ci left: 7.709145e-02	ci right 7.965236e-02	k: 13322	n:170000
KS ci ratio: 2.146036e-01	ci left: 1.748669e-03	ci right 2.174485e-03	k: 332	n:170000
SOX21   170000 perm   35 sec   (4815 perm/sec)   p_kst 1.952941e-03   p_cons 7.836471e-02   p_joint 1.700000e-03

Joint ci ratio: 2.268908e-01	ci left: 1.467794e-03	ci right 1.848545e-03	k: 297	n:180000
Cons ci ratio: 3.168196e-02	ci left: 7.714019e-02	ci right 7.962897e-02	k: 14108	n:180000
KS ci ratio: 2.052554e-01	ci left: 1.814699e-03	ci right 2.234932e-03	k: 363	n:180000
SOX21   180000 perm   38 sec   (4736 perm/sec)   p_kst 2.016667e-03   p_cons 7.837778e-02   p_joint 1.650000e-03

Joint ci ratio: 2.482564e-01	ci left: 1.147941e-03	ci right 1.478102e-03	k: 248	n:190000
Cons ci ratio: 3.083228e-02	ci left: 7.719516e-02	ci right 7.961772e-02	k: 14896	n:190000
KS ci ratio: 2.022275e-01	ci left: 1.774126e-03	ci right 2.178154e-03	k: 374	n:190000
SOX21   190000 perm   41 sec   (4656 perm/sec)   p_kst 1.968421e-03   p_cons 7.840000e-02   p_joint 1.305263e-03

Joint ci ratio: 2.093489e-01	ci left: 1.566841e-03	ci right 1.937840e-03	k: 349	n:200000
Cons ci ratio: 3.007351e-02	ci left: 7.712129e-02	ci right 7.948095e-02	k: 15659	n:200000
KS ci ratio: 1.955586e-01	ci left: 1.808950e-03	ci right 2.205706e-03	k: 400	n:200000
SOX21   200000 perm   44 sec   (4579 perm/sec)   p_kst 2.000000e-03   p_cons 7.829500e-02   p_joint 1.745000e-03

Joint ci ratio: 2.055683e-01	ci left: 1.550917e-03	ci right 1.910680e-03	k: 362	n:210000
Cons ci ratio: 2.933616e-02	ci left: 7.721122e-02	ci right 7.951472e-02	k: 16455	n:210000
KS ci ratio: 1.899550e-01	ci left: 1.831583e-03	ci right 2.220463e-03	k: 424	n:210000
SOX21   210000 perm   47 sec   (4509 perm/sec)   p_kst 2.019048e-03   p_cons 7.835714e-02   p_joint 1.723810e-03

Joint ci ratio: 1.988318e-01	ci left: 1.588308e-03	ci right 1.943208e-03	k: 387	n:220000
Cons ci ratio: 2.865412e-02	ci left: 7.727555e-02	ci right 7.952648e-02	k: 17247	n:220000
KS ci ratio: 1.856374e-01	ci left: 1.834965e-03	ci right 2.214711e-03	k: 444	n:220000
SOX21   220000 perm   50 sec   (4443 perm/sec)   p_kst 2.018182e-03   p_cons 7.839545e-02   p_joint 1.759091e-03

Joint ci ratio: 2.001354e-01	ci left: 1.498591e-03	ci right 1.835906e-03	k: 382	n:230000
Cons ci ratio: 2.802597e-02	ci left: 7.729165e-02	ci right 7.949290e-02	k: 18029	n:230000
KS ci ratio: 1.808237e-01	ci left: 1.854748e-03	ci right 2.227545e-03	k: 468	n:230000
SOX21   230000 perm   53 sec   (4380 perm/sec)   p_kst 2.034783e-03   p_cons 7.838696e-02   p_joint 1.660870e-03

Joint ci ratio: 1.968244e-01	ci left: 1.487624e-03	ci right 1.816266e-03	k: 395	n:240000
Cons ci ratio: 2.743978e-02	ci left: 7.729448e-02	ci right 7.944904e-02	k: 18808	n:240000
KS ci ratio: 1.769063e-01	ci left: 1.861050e-03	ci right 2.226143e-03	k: 489	n:240000
SOX21   240000 perm   56 sec   (4318 perm/sec)   p_kst 2.037500e-03   p_cons 7.836667e-02   p_joint 1.645833e-03

Joint ci ratio: 1.934358e-01	ci left: 1.481382e-03	ci right 1.802349e-03	k: 409	n:250000
Cons ci ratio: 2.690752e-02	ci left: 7.719815e-02	ci right 7.930764e-02	k: 19562	n:250000
KS ci ratio: 1.730633e-01	ci left: 1.870755e-03	ci right 2.228947e-03	k: 511	n:250000
SOX21   250000 perm   59 sec   (4258 perm/sec)   p_kst 2.044000e-03   p_cons 7.824800e-02   p_joint 1.636000e-03

Joint ci ratio: 1.798870e-01	ci left: 1.659086e-03	ci right 1.990639e-03	k: 473	n:260000
Cons ci ratio: 2.637412e-02	ci left: 7.727782e-02	ci right 7.934698e-02	k: 20360	n:260000
KS ci ratio: 1.707468e-01	ci left: 1.850330e-03	ci right 2.199381e-03	k: 525	n:260000
SOX21   260000 perm   62 sec   (4199 perm/sec)   p_kst 2.019231e-03   p_cons 7.830769e-02   p_joint 1.819231e-03

Joint ci ratio: 1.765658e-01	ci left: 1.661331e-03	ci right 1.986549e-03	k: 491	n:270000
Cons ci ratio: 2.587852e-02	ci left: 7.731146e-02	ci right 7.934205e-02	k: 21147	n:270000
KS ci ratio: 1.665243e-01	ci left: 1.877582e-03	ci right 2.222136e-03	k: 552	n:270000
SOX21   270000 perm   65 sec   (4142 perm/sec)   p_kst 2.044444e-03   p_cons 7.832222e-02   p_joint 1.818519e-03

Joint ci ratio: 1.749756e-01	ci left: 1.632724e-03	ci right 1.949159e-03	k: 500	n:280000
Cons ci ratio: 2.540420e-02	ci left: 7.737499e-02	ci right 7.936946e-02	k: 21943	n:280000
KS ci ratio: 1.640232e-01	ci left: 1.868727e-03	ci right 2.205998e-03	k: 569	n:280000
SOX21   280000 perm   69 sec   (4086 perm/sec)   p_kst 2.032143e-03   p_cons 7.836786e-02   p_joint 1.785714e-03

Joint ci ratio: 1.717489e-01	ci left: 1.639098e-03	ci right 1.950304e-03	k: 519	n:290000
Cons ci ratio: 2.494968e-02	ci left: 7.746532e-02	ci right 7.942587e-02	k: 22748	n:290000
KS ci ratio: 1.612193e-01	ci left: 1.870448e-03	ci right 2.201699e-03	k: 589	n:290000
SOX21   290000 perm   72 sec   (4033 perm/sec)   p_kst 2.031034e-03   p_cons 7.844138e-02   p_joint 1.789655e-03

Joint ci ratio: 1.690087e-01	ci left: 1.638712e-03	ci right 1.944374e-03	k: 536	n:300000
Cons ci ratio: 2.451758e-02	ci left: 7.755655e-02	ci right 7.948494e-02	k: 23555	n:300000
KS ci ratio: 1.590779e-01	ci left: 1.859294e-03	ci right 2.183779e-03	k: 605	n:300000
SOX21   300000 perm   75 sec   (3979 perm/sec)   p_kst 2.016667e-03   p_cons 7.851667e-02   p_joint 1.786667e-03

Joint ci ratio: 1.854835e-01	ci left: 1.305275e-03	ci right 1.575150e-03	k: 445	n:310000
Cons ci ratio: 2.412600e-02	ci left: 7.752988e-02	ci right 7.942639e-02	k: 24327	n:310000
KS ci ratio: 1.560175e-01	ci left: 1.873685e-03	ci right 2.193803e-03	k: 629	n:310000
SOX21   310000 perm   79 sec   (3928 perm/sec)   p_kst 2.029032e-03   p_cons 7.847419e-02   p_joint 1.435484e-03

Joint ci ratio: 1.612348e-01	ci left: 1.695081e-03	ci right 1.995306e-03	k: 589	n:320000
Cons ci ratio: 2.376030e-02	ci left: 7.745850e-02	ci right 7.932414e-02	k: 25084	n:320000
KS ci ratio: 1.534803e-01	ci left: 1.878217e-03	ci right 2.193410e-03	k: 650	n:320000
SOX21   320000 perm   83 sec   (3875 perm/sec)   p_kst 2.031250e-03   p_cons 7.838750e-02   p_joint 1.840625e-03

Joint ci ratio: 1.764157e-01	ci left: 1.362148e-03	ci right 1.628547e-03	k: 492	n:330000
Cons ci ratio: 2.341664e-02	ci left: 7.735548e-02	ci right 7.919133e-02	k: 25829	n:330000
KS ci ratio: 1.514020e-01	ci left: 1.873766e-03	ci right 2.183568e-03	k: 668	n:330000
SOX21   330000 perm   86 sec   (3824 perm/sec)   p_kst 2.024242e-03   p_cons 7.826970e-02   p_joint 1.490909e-03

Joint ci ratio: 1.737916e-01	ci left: 1.364269e-03	ci right 1.626698e-03	k: 507	n:340000
Cons ci ratio: 2.306676e-02	ci left: 7.738743e-02	ci right 7.919624e-02	k: 26618	n:340000
KS ci ratio: 1.491885e-01	ci left: 1.875267e-03	ci right 2.180379e-03	k: 688	n:340000
SOX21   340000 perm   90 sec   (3774 perm/sec)   p_kst 2.023529e-03   p_cons 7.828824e-02   p_joint 1.491176e-03

Joint ci ratio: 1.764233e-01	ci left: 1.284307e-03	ci right 1.535493e-03	k: 492	n:350000
Cons ci ratio: 2.273345e-02	ci left: 7.740922e-02	ci right 7.919205e-02	k: 27404	n:350000
KS ci ratio: 1.478022e-01	ci left: 1.857449e-03	ci right 2.156606e-03	k: 701	n:350000
SOX21   350000 perm   94 sec   (3719 perm/sec)   p_kst 2.002857e-03   p_cons 7.829714e-02   p_joint 1.405714e-03

Joint ci ratio: 1.696681e-01	ci left: 1.354936e-03	ci right 1.608752e-03	k: 532	n:360000
Cons ci ratio: 2.241506e-02	ci left: 7.742446e-02	ci right 7.918234e-02	k: 28188	n:360000
KS ci ratio: 1.458420e-01	ci left: 1.856692e-03	ci right 2.151416e-03	k: 720	n:360000
SOX21   360000 perm   98 sec   (3671 perm/sec)   p_kst 2.000000e-03   p_cons 7.830000e-02   p_joint 1.477778e-03

Joint ci ratio: 1.719479e-01	ci left: 1.282092e-03	ci right 1.525824e-03	k: 518	n:370000
Cons ci ratio: 2.209975e-02	ci left: 7.750357e-02	ci right 7.923818e-02	k: 28996	n:370000
KS ci ratio: 1.447438e-01	ci left: 1.835159e-03	ci right 2.124081e-03	k: 731	n:370000
SOX21   370000 perm   102 sec   (3627 perm/sec)   p_kst 1.975676e-03   p_cons 7.836757e-02   p_joint 1.400000e-03

Joint ci ratio: 1.535051e-01	ci left: 1.581638e-03	ci right 1.847106e-03	k: 650	n:380000
Cons ci ratio: 2.180254e-02	ci left: 7.754464e-02	ci right 7.925653e-02	k: 29791	n:380000
KS ci ratio: 1.428060e-01	ci left: 1.837603e-03	ci right 2.122708e-03	k: 751	n:380000
SOX21   380000 perm   106 sec   (3584 perm/sec)   p_kst 1.976316e-03   p_cons 7.839737e-02   p_joint 1.710526e-03

Joint ci ratio: 1.518812e-01	ci left: 1.575608e-03	ci right 1.837013e-03	k: 664	n:390000
Cons ci ratio: 2.152044e-02	ci left: 7.756079e-02	ci right 7.925061e-02	k: 30577	n:390000
KS ci ratio: 1.414960e-01	ci left: 1.825105e-03	ci right 2.105454e-03	k: 765	n:390000
SOX21   390000 perm   110 sec   (3539 perm/sec)   p_kst 1.961538e-03   p_cons 7.840256e-02   p_joint 1.702564e-03

Joint ci ratio: 1.505301e-01	ci left: 1.565082e-03	ci right 1.822222e-03	k: 676	n:400000
Cons ci ratio: 2.123249e-02	ci left: 7.768822e-02	ci right 7.935789e-02	k: 31408	n:400000
KS ci ratio: 1.395952e-01	ci left: 1.830132e-03	ci right 2.107162e-03	k: 786	n:400000
SOX21   400000 perm   115 sec   (3485 perm/sec)   p_kst 1.965000e-03   p_cons 7.852000e-02   p_joint 1.690000e-03

Joint ci ratio: 1.493230e-01	ci left: 1.552732e-03	ci right 1.805614e-03	k: 687	n:410000
Cons ci ratio: 2.097063e-02	ci left: 7.770763e-02	ci right 7.935687e-02	k: 32197	n:410000
KS ci ratio: 1.380260e-01	ci left: 1.827872e-03	ci right 2.101194e-03	k: 804	n:410000
SOX21   410000 perm   119 sec   (3443 perm/sec)   p_kst 1.960976e-03   p_cons 7.852927e-02   p_joint 1.675610e-03

Joint ci ratio: 1.636484e-01	ci left: 1.252635e-03	ci right 1.478143e-03	k: 572	n:420000
Cons ci ratio: 2.070698e-02	ci left: 7.780443e-02	ci right 7.943472e-02	k: 33019	n:420000
KS ci ratio: 1.365917e-01	ci left: 1.823437e-03	ci right 2.093032e-03	k: 821	n:420000
SOX21   420000 perm   123 sec   (3402 perm/sec)   p_kst 1.954762e-03   p_cons 7.861667e-02   p_joint 1.361905e-03

Joint ci ratio: 1.618231e-01	ci left: 1.252506e-03	ci right 1.475231e-03	k: 585	n:430000
Cons ci ratio: 2.047339e-02	ci left: 7.775334e-02	ci right 7.936397e-02	k: 33779	n:430000
KS ci ratio: 1.347993e-01	ci left: 1.830458e-03	ci right 2.097255e-03	k: 843	n:430000
SOX21   430000 perm   128 sec   (3362 perm/sec)   p_kst 1.960465e-03   p_cons 7.855581e-02   p_joint 1.360465e-03

Joint ci ratio: 1.595251e-01	ci left: 1.261123e-03	ci right 1.481891e-03	k: 602	n:440000
Cons ci ratio: 2.022277e-02	ci left: 7.788113e-02	ci right 7.947443e-02	k: 34617	n:440000
KS ci ratio: 1.331528e-01	ci left: 1.834984e-03	ci right 2.098916e-03	k: 864	n:440000
SOX21   440000 perm   132 sec   (3323 perm/sec)   p_kst 1.963636e-03   p_cons 7.867500e-02   p_joint 1.368182e-03

Joint ci ratio: 1.580902e-01	ci left: 1.256571e-03	ci right 1.474375e-03	k: 613	n:450000
Cons ci ratio: 1.999183e-02	ci left: 7.792593e-02	ci right 7.950173e-02	k: 35420	n:450000
KS ci ratio: 1.311947e-01	ci left: 1.850075e-03	ci right 2.111959e-03	k: 890	n:450000
SOX21   450000 perm   137 sec   (3285 perm/sec)   p_kst 1.977778e-03   p_cons 7.871111e-02   p_joint 1.362222e-03

Joint ci ratio: 1.566933e-01	ci left: 1.252225e-03	ci right 1.467178e-03	k: 624	n:460000
Cons ci ratio: 1.976449e-02	ci left: 7.799917e-02	ci right 7.955831e-02	k: 36237	n:460000
KS ci ratio: 1.298895e-01	ci left: 1.847708e-03	ci right 2.106455e-03	k: 908	n:460000
SOX21   460000 perm   142 sec   (3250 perm/sec)   p_kst 1.973913e-03   p_cons 7.877609e-02   p_joint 1.356522e-03

Joint ci ratio: 1.554552e-01	ci left: 1.246027e-03	ci right 1.458069e-03	k: 634	n:470000
Cons ci ratio: 1.954845e-02	ci left: 7.804186e-02	ci right 7.958461e-02	k: 37041	n:470000
KS ci ratio: 1.282764e-01	ci left: 1.855752e-03	ci right 2.112152e-03	k: 931	n:470000
SOX21   470000 perm   146 sec   (3213 perm/sec)   p_kst 1.980851e-03   p_cons 7.881064e-02   p_joint 1.348936e-03

Joint ci ratio: 1.529455e-01	ci left: 1.262131e-03	ci right 1.473128e-03	k: 655	n:480000
Cons ci ratio: 1.933796e-02	ci left: 7.809323e-02	ci right 7.962019e-02	k: 37850	n:480000
KS ci ratio: 1.265229e-01	ci left: 1.869532e-03	ci right 2.124040e-03	k: 957	n:480000
SOX21   480000 perm   151 sec   (3179 perm/sec)   p_kst 1.993750e-03   p_cons 7.885417e-02   p_joint 1.364583e-03

Joint ci ratio: 1.357043e-01	ci left: 1.584617e-03	ci right 1.817257e-03	k: 832	n:490000
Cons ci ratio: 1.914165e-02	ci left: 7.808570e-02	ci right 7.959684e-02	k: 38631	n:490000
KS ci ratio: 1.251584e-01	ci left: 1.872886e-03	ci right 2.124897e-03	k: 978	n:490000
SOX21   490000 perm   156 sec   (3146 perm/sec)   p_kst 1.995918e-03   p_cons 7.883878e-02   p_joint 1.697959e-03

Joint ci ratio: 1.344990e-01	ci left: 1.581910e-03	ci right 1.811925e-03	k: 847	n:500000
Cons ci ratio: 1.896348e-02	ci left: 7.798495e-02	ci right 7.947994e-02	k: 39365	n:500000
KS ci ratio: 1.239614e-01	ci left: 1.872244e-03	ci right 2.121583e-03	k: 997	n:500000
SOX21   500000 perm   161 sec   (3113 perm/sec)   p_kst 1.994000e-03   p_cons 7.873000e-02   p_joint 1.694000e-03

Joint ci ratio: 1.334803e-01	ci left: 1.575528e-03	ci right 1.802742e-03	k: 860	n:510000
Cons ci ratio: 1.877977e-02	ci left: 7.796826e-02	ci right 7.944829e-02	k: 40140	n:510000
KS ci ratio: 1.229800e-01	ci left: 1.865937e-03	ci right 2.112325e-03	k: 1013	n:510000
SOX21   510000 perm   166 sec   (3081 perm/sec)   p_kst 1.986275e-03   p_cons 7.870588e-02   p_joint 1.686275e-03

Joint ci ratio: 1.313600e-01	ci left: 1.597293e-03	ci right 1.823701e-03	k: 888	n:520000
Cons ci ratio: 1.860179e-02	ci left: 7.794845e-02	ci right 7.941394e-02	k: 40913	n:520000
KS ci ratio: 1.213155e-01	ci left: 1.882255e-03	ci right 2.127192e-03	k: 1041	n:520000
SOX21   520000 perm   171 sec   (3050 perm/sec)   p_kst 2.001923e-03   p_cons 7.867885e-02   p_joint 1.707692e-03

Joint ci ratio: 1.298350e-01	ci left: 1.605484e-03	ci right 1.830208e-03	k: 909	n:530000
Cons ci ratio: 1.843959e-02	ci left: 7.784491e-02	ci right 7.929555e-02	k: 41641	n:530000
KS ci ratio: 1.202245e-01	ci left: 1.881507e-03	ci right 2.123988e-03	k: 1060	n:530000
SOX21   530000 perm   176 sec   (3019 perm/sec)   p_kst 2.000000e-03   p_cons 7.856792e-02   p_joint 1.715094e-03

Joint ci ratio: 1.289179e-01	ci left: 1.599047e-03	ci right 1.821168e-03	k: 922	n:540000
Cons ci ratio: 1.826331e-02	ci left: 7.788910e-02	ci right 7.932654e-02	k: 42447	n:540000
KS ci ratio: 1.193285e-01	ci left: 1.875406e-03	ci right 2.115173e-03	k: 1076	n:540000
SOX21   540000 perm   181 sec   (2988 perm/sec)   p_kst 1.992593e-03   p_cons 7.860556e-02   p_joint 1.707407e-03

Joint ci ratio: 1.279516e-01	ci left: 1.594610e-03	ci right 1.814328e-03	k: 936	n:550000
Cons ci ratio: 1.810017e-02	ci left: 7.786656e-02	ci right 7.929061e-02	k: 43217	n:550000
KS ci ratio: 1.182358e-01	ci left: 1.876591e-03	ci right 2.114158e-03	k: 1096	n:550000
SOX21   550000 perm   186 sec   (2958 perm/sec)   p_kst 1.992727e-03   p_cons 7.857636e-02   p_joint 1.701818e-03

Joint ci ratio: 1.266072e-01	ci left: 1.600712e-03	ci right 1.818780e-03	k: 956	n:560000
Cons ci ratio: 1.793292e-02	ci left: 7.791246e-02	ci right 7.932405e-02	k: 44025	n:560000
KS ci ratio: 1.169628e-01	ci left: 1.884677e-03	ci right 2.120522e-03	k: 1120	n:560000
SOX21   560000 perm   191 sec   (2926 perm/sec)   p_kst 2.000000e-03   p_cons 7.861607e-02   p_joint 1.707143e-03

Joint ci ratio: 1.254329e-01	ci left: 1.603213e-03	ci right 1.819446e-03	k: 974	n:570000
Cons ci ratio: 1.777259e-02	ci left: 7.793758e-02	ci right 7.933688e-02	k: 44822	n:570000
KS ci ratio: 1.159841e-01	ci left: 1.883975e-03	ci right 2.117624e-03	k: 1139	n:570000
SOX21   570000 perm   197 sec   (2897 perm/sec)   p_kst 1.998246e-03   p_cons 7.863509e-02   p_joint 1.708772e-03

Joint ci ratio: 1.243535e-01	ci left: 1.603966e-03	ci right 1.818301e-03	k: 991	n:580000
Cons ci ratio: 1.761313e-02	ci left: 7.798937e-02	ci right 7.937691e-02	k: 45635	n:580000
KS ci ratio: 1.152790e-01	ci left: 1.874932e-03	ci right 2.105950e-03	k: 1153	n:580000
SOX21   580000 perm   202 sec   (2870 perm/sec)   p_kst 1.987931e-03   p_cons 7.868103e-02   p_joint 1.708621e-03

Joint ci ratio: 1.237322e-01	ci left: 1.593203e-03	ci right 1.804958e-03	k: 1001	n:590000
Cons ci ratio: 1.746605e-02	ci left: 7.797193e-02	ci right 7.934746e-02	k: 46408	n:590000
KS ci ratio: 1.143417e-01	ci left: 1.874432e-03	ci right 2.103384e-03	k: 1172	n:590000
SOX21   590000 perm   208 sec   (2842 perm/sec)   p_kst 1.986441e-03   p_cons 7.865763e-02   p_joint 1.696610e-03

Joint ci ratio: 1.225753e-01	ci left: 1.597341e-03	ci right 1.807517e-03	k: 1020	n:600000
Cons ci ratio: 1.731921e-02	ci left: 7.798335e-02	ci right 7.934739e-02	k: 47198	n:600000
KS ci ratio: 1.133792e-01	ci left: 1.875575e-03	ci right 2.102609e-03	k: 1192	n:600000
SOX21   600000 perm   213 sec   (2815 perm/sec)   p_kst 1.986667e-03   p_cons 7.866333e-02   p_joint 1.700000e-03

Joint ci ratio: 1.215088e-01	ci left: 1.599763e-03	ci right 1.808294e-03	k: 1038	n:610000
Cons ci ratio: 1.717951e-02	ci left: 7.796504e-02	ci right 7.931766e-02	k: 47970	n:610000
KS ci ratio: 1.125802e-01	ci left: 1.871909e-03	ci right 2.096797e-03	k: 1209	n:610000
SOX21   610000 perm   219 sec   (2787 perm/sec)   p_kst 1.981967e-03   p_cons 7.863934e-02   p_joint 1.701639e-03

Joint ci ratio: 1.206413e-01	ci left: 1.597421e-03	ci right 1.804054e-03	k: 1053	n:620000
Cons ci ratio: 1.703878e-02	ci left: 7.798432e-02	ci right 7.932608e-02	k: 48765	n:620000
KS ci ratio: 1.117066e-01	ci left: 1.871503e-03	ci right 2.094482e-03	k: 1228	n:620000
SOX21   620000 perm   225 sec   (2761 perm/sec)   p_kst 1.980645e-03   p_cons 7.865323e-02   p_joint 1.698387e-03

Joint ci ratio: 1.199608e-01	ci left: 1.590539e-03	ci right 1.795039e-03	k: 1065	n:630000
Cons ci ratio: 1.690329e-02	ci left: 7.798721e-02	ci right 7.931825e-02	k: 49550	n:630000
KS ci ratio: 1.107642e-01	ci left: 1.874203e-03	ci right 2.095496e-03	k: 1249	n:630000
SOX21   630000 perm   230 sec   (2735 perm/sec)   p_kst 1.982540e-03   p_cons 7.865079e-02   p_joint 1.690476e-03

Joint ci ratio: 1.190706e-01	ci left: 1.589939e-03	ci right 1.792739e-03	k: 1081	n:640000
Cons ci ratio: 1.676214e-02	ci left: 7.806633e-02	ci right 7.938748e-02	k: 50384	n:640000
KS ci ratio: 1.102370e-01	ci left: 1.863149e-03	ci right 2.082023e-03	k: 1261	n:640000
SOX21   640000 perm   236 sec   (2710 perm/sec)   p_kst 1.970312e-03   p_cons 7.872500e-02   p_joint 1.689063e-03

Joint ci ratio: 1.183621e-01	ci left: 1.584885e-03	ci right 1.785752e-03	k: 1094	n:650000
Cons ci ratio: 1.664511e-02	ci left: 7.796374e-02	ci right 7.927386e-02	k: 51101	n:650000
KS ci ratio: 1.095022e-01	ci left: 1.859920e-03	ci right 2.076864e-03	k: 1278	n:650000
SOX21   650000 perm   242 sec   (2683 perm/sec)   p_kst 1.966154e-03   p_cons 7.861692e-02   p_joint 1.683077e-03

Joint ci ratio: 1.209929e-01	ci left: 1.491786e-03	ci right 1.685358e-03	k: 1047	n:660000
Cons ci ratio: 1.651528e-02	ci left: 7.799713e-02	ci right 7.929748e-02	k: 51906	n:660000
KS ci ratio: 1.089504e-01	ci left: 1.850898e-03	ci right 2.065632e-03	k: 1291	n:660000
SOX21   660000 perm   248 sec   (2658 perm/sec)   p_kst 1.956061e-03   p_cons 7.864545e-02   p_joint 1.586364e-03

Joint ci ratio: 1.198543e-01	ci left: 1.498473e-03	ci right 1.690952e-03	k: 1067	n:670000
Cons ci ratio: 1.639080e-02	ci left: 7.800873e-02	ci right 7.929939e-02	k: 52697	n:670000
KS ci ratio: 1.081168e-01	ci left: 1.852313e-03	ci right 2.065463e-03	k: 1311	n:670000
SOX21   670000 perm   254 sec   (2634 perm/sec)   p_kst 1.956716e-03   p_cons 7.865224e-02   p_joint 1.592537e-03

Joint ci ratio: 1.191870e-01	ci left: 1.493556e-03	ci right 1.684260e-03	k: 1079	n:680000
Cons ci ratio: 1.627240e-02	ci left: 7.799073e-02	ci right 7.927168e-02	k: 53468	n:680000
KS ci ratio: 1.075450e-01	ci left: 1.845106e-03	ci right 2.056232e-03	k: 1325	n:680000
SOX21   680000 perm   260 sec   (2611 perm/sec)   p_kst 1.948529e-03   p_cons 7.862941e-02   p_joint 1.586765e-03

Joint ci ratio: 1.181519e-01	ci left: 1.498629e-03	ci right 1.688204e-03	k: 1098	n:690000
Cons ci ratio: 1.615685e-02	ci left: 7.797040e-02	ci right 7.924184e-02	k: 54237	n:690000
KS ci ratio: 1.069821e-01	ci left: 1.838111e-03	ci right 2.047266e-03	k: 1339	n:690000
SOX21   690000 perm   267 sec   (2589 perm/sec)   p_kst 1.940580e-03   p_cons 7.860435e-02   p_joint 1.591304e-03

Joint ci ratio: 1.175124e-01	ci left: 1.493857e-03	ci right 1.681735e-03	k: 1110	n:700000
Cons ci ratio: 1.602934e-02	ci left: 7.808020e-02	ci right 7.934329e-02	k: 55097	n:700000
KS ci ratio: 1.059975e-01	ci left: 1.846615e-03	ci right 2.054684e-03	k: 1364	n:700000
SOX21   700000 perm   273 sec   (2567 perm/sec)   p_kst 1.948571e-03   p_cons 7.871000e-02   p_joint 1.585714e-03

Joint ci ratio: 1.169354e-01	ci left: 1.487855e-03	ci right 1.673996e-03	k: 1121	n:710000
Cons ci ratio: 1.591840e-02	ci left: 7.806345e-02	ci right 7.931745e-02	k: 55869	n:710000
KS ci ratio: 1.052293e-01	ci left: 1.848032e-03	ci right 2.054657e-03	k: 1384	n:710000
SOX21   710000 perm   279 sec   (2546 perm/sec)   p_kst 1.949296e-03   p_cons 7.868873e-02   p_joint 1.578873e-03

Joint ci ratio: 1.163153e-01	ci left: 1.483371e-03	ci right 1.667899e-03	k: 1133	n:720000
Cons ci ratio: 1.580594e-02	ci left: 7.808180e-02	ci right 7.932715e-02	k: 56666	n:720000
KS ci ratio: 1.044404e-01	ci left: 1.850767e-03	ci right 2.056051e-03	k: 1405	n:720000
SOX21   720000 perm   285 sec   (2524 perm/sec)   p_kst 1.951389e-03   p_cons 7.870278e-02   p_joint 1.573611e-03

Joint ci ratio: 1.155537e-01	ci left: 1.483003e-03	ci right 1.666194e-03	k: 1148	n:730000
Cons ci ratio: 1.569835e-02	ci left: 7.807647e-02	ci right 7.931318e-02	k: 57446	n:730000
KS ci ratio: 1.037419e-01	ci left: 1.850763e-03	ci right 2.054591e-03	k: 1424	n:730000
SOX21   730000 perm   292 sec   (2502 perm/sec)   p_kst 1.950685e-03   p_cons 7.869315e-02   p_joint 1.572603e-03

Joint ci ratio: 1.145606e-01	ci left: 1.489212e-03	ci right 1.671482e-03	k: 1168	n:740000
Cons ci ratio: 1.559773e-02	ci left: 7.802687e-02	ci right 7.925481e-02	k: 58193	n:740000
KS ci ratio: 1.028788e-01	ci left: 1.857348e-03	ci right 2.060096e-03	k: 1448	n:740000
SOX21   740000 perm   298 sec   (2481 perm/sec)   p_kst 1.956757e-03   p_cons 7.863919e-02   p_joint 1.578378e-03

Joint ci ratio: 1.136405e-01	ci left: 1.493966e-03	ci right 1.675252e-03	k: 1187	n:750000
Cons ci ratio: 1.549616e-02	ci left: 7.800520e-02	ci right 7.922473e-02	k: 58960	n:750000
KS ci ratio: 1.017949e-01	ci left: 1.872859e-03	ci right 2.075018e-03	k: 1479	n:750000
SOX21   750000 perm   305 sec   (2461 perm/sec)   p_kst 1.972000e-03   p_cons 7.861333e-02   p_joint 1.582667e-03

Joint ci ratio: 1.129769e-01	ci left: 1.492208e-03	ci right 1.672152e-03	k: 1201	n:760000
Cons ci ratio: 1.538914e-02	ci left: 7.805361e-02	ci right 7.926539e-02	k: 59780	n:760000
KS ci ratio: 1.013512e-01	ci left: 1.864887e-03	ci right 2.065255e-03	k: 1492	n:760000
SOX21   760000 perm   311 sec   (2440 perm/sec)   p_kst 1.963158e-03   p_cons 7.865789e-02   p_joint 1.580263e-03

Joint ci ratio: 1.083791e-01	ci left: 1.604161e-03	ci right 1.789231e-03	k: 1305	n:770000
Cons ci ratio: 1.528993e-02	ci left: 7.804773e-02	ci right 7.925154e-02	k: 60559	n:770000
KS ci ratio: 1.008797e-01	ci left: 1.858389e-03	ci right 2.057076e-03	k: 1506	n:770000
SOX21   770000 perm   318 sec   (2420 perm/sec)   p_kst 1.955844e-03   p_cons 7.864805e-02   p_joint 1.694805e-03

Joint ci ratio: 1.074368e-01	ci left: 1.612286e-03	ci right 1.796574e-03	k: 1328	n:780000
Cons ci ratio: 1.519287e-02	ci left: 7.803947e-02	ci right 7.923545e-02	k: 61336	n:780000
KS ci ratio: 1.001184e-01	ci left: 1.863310e-03	ci right 2.060931e-03	k: 1529	n:780000
SOX21   780000 perm   325 sec   (2398 perm/sec)   p_kst 1.960256e-03   p_cons 7.863590e-02   p_joint 1.702564e-03

Joint ci ratio: 1.105212e-01	ci left: 1.501986e-03	ci right 1.678916e-03	k: 1255	n:790000
Cons ci ratio: 1.509211e-02	ci left: 7.808443e-02	ci right 7.927309e-02	k: 62155	n:790000
KS ci ratio: 9.959916e-02	ci left: 1.859471e-03	ci right 2.055602e-03	k: 1545	n:790000
SOX21   790000 perm   332 sec   (2379 perm/sec)   p_kst 1.955696e-03   p_cons 7.867722e-02   p_joint 1.588608e-03

Joint ci ratio: 1.063230e-01	ci left: 1.606043e-03	ci right 1.787595e-03	k: 1356	n:800000
Cons ci ratio: 1.499940e-02	ci left: 7.806974e-02	ci right 7.925081e-02	k: 62927	n:800000
KS ci ratio: 9.889783e-02	ci left: 1.863045e-03	ci right 2.058089e-03	k: 1567	n:800000
SOX21   800000 perm   339 sec   (2360 perm/sec)   p_kst 1.958750e-03   p_cons 7.865875e-02   p_joint 1.695000e-03

Joint ci ratio: 1.091396e-01	ci left: 1.503321e-03	ci right 1.678052e-03	k: 1287	n:810000
Cons ci ratio: 1.490685e-02	ci left: 7.807020e-02	ci right 7.924393e-02	k: 63711	n:810000
KS ci ratio: 9.821110e-02	ci left: 1.866536e-03	ci right 2.060510e-03	k: 1589	n:810000
SOX21   810000 perm   346 sec   (2340 perm/sec)   p_kst 1.961728e-03   p_cons 7.865556e-02   p_joint 1.588889e-03

Joint ci ratio: 1.086350e-01	ci left: 1.499223e-03	ci right 1.672621e-03	k: 1299	n:820000
Cons ci ratio: 1.481375e-02	ci left: 7.809254e-02	ci right 7.925922e-02	k: 64513	n:820000
KS ci ratio: 9.732697e-02	ci left: 1.878275e-03	ci right 2.071612e-03	k: 1618	n:820000
SOX21   820000 perm   353 sec   (2322 perm/sec)   p_kst 1.973171e-03   p_cons 7.867439e-02   p_joint 1.584146e-03

Joint ci ratio: 1.079315e-01	ci left: 1.501088e-03	ci right 1.673505e-03	k: 1316	n:830000
Cons ci ratio: 1.472679e-02	ci left: 7.807115e-02	ci right 7.923059e-02	k: 65279	n:830000
KS ci ratio: 9.682014e-02	ci left: 1.875630e-03	ci right 2.067632e-03	k: 1635	n:830000
SOX21   830000 perm   360 sec   (2304 perm/sec)   p_kst 1.969880e-03   p_cons 7.864940e-02   p_joint 1.585542e-03

Joint ci ratio: 1.072415e-01	ci left: 1.502911e-03	ci right 1.674365e-03	k: 1333	n:840000
Cons ci ratio: 1.463568e-02	ci left: 7.810604e-02	ci right 7.925877e-02	k: 66092	n:840000
KS ci ratio: 9.643813e-02	ci left: 1.868402e-03	ci right 2.058868e-03	k: 1648	n:840000
SOX21   840000 perm   367 sec   (2286 perm/sec)   p_kst 1.961905e-03   p_cons 7.868095e-02   p_joint 1.586905e-03

Joint ci ratio: 1.066832e-01	ci left: 1.501260e-03	ci right 1.671578e-03	k: 1347	n:850000
Cons ci ratio: 1.455132e-02	ci left: 7.808972e-02	ci right 7.923551e-02	k: 66862	n:850000
KS ci ratio: 9.594499e-02	ci left: 1.865940e-03	ci right 2.055127e-03	k: 1665	n:850000
SOX21   850000 perm   375 sec   (2269 perm/sec)   p_kst 1.958824e-03   p_cons 7.866118e-02   p_joint 1.584706e-03

Joint ci ratio: 1.060946e-01	ci left: 1.500781e-03	ci right 1.670046e-03	k: 1362	n:860000
Cons ci ratio: 1.446329e-02	ci left: 7.812479e-02	ci right 7.926410e-02	k: 67676	n:860000
KS ci ratio: 9.545933e-02	ci left: 1.863537e-03	ci right 2.051471e-03	k: 1682	n:860000
SOX21   860000 perm   382 sec   (2253 perm/sec)   p_kst 1.955814e-03   p_cons 7.869302e-02   p_joint 1.583721e-03

Joint ci ratio: 1.053626e-01	ci left: 1.504792e-03	ci right 1.673267e-03	k: 1381	n:870000
Cons ci ratio: 1.438243e-02	ci left: 7.810293e-02	ci right 7.923551e-02	k: 68441	n:870000
KS ci ratio: 9.503701e-02	ci left: 1.858948e-03	ci right 2.045543e-03	k: 1697	n:870000
SOX21   870000 perm   389 sec   (2236 perm/sec)   p_kst 1.950575e-03   p_cons 7.866782e-02   p_joint 1.587356e-03

Joint ci ratio: 1.046456e-01	ci left: 1.508716e-03	ci right 1.676410e-03	k: 1400	n:880000
Cons ci ratio: 1.430258e-02	ci left: 7.808499e-02	ci right 7.921097e-02	k: 69209	n:880000
KS ci ratio: 9.448218e-02	ci left: 1.860012e-03	ci right 2.045564e-03	k: 1717	n:880000
SOX21   880000 perm   396 sec   (2220 perm/sec)   p_kst 1.951136e-03   p_cons 7.864659e-02   p_joint 1.590909e-03

Joint ci ratio: 1.040163e-01	ci left: 1.510367e-03	ci right 1.677173e-03	k: 1417	n:890000
Cons ci ratio: 1.422536e-02	ci left: 7.805403e-02	ci right 7.917343e-02	k: 69965	n:890000
KS ci ratio: 9.390989e-02	ci left: 1.862153e-03	ci right 2.046731e-03	k: 1738	n:890000
SOX21   890000 perm   404 sec   (2204 perm/sec)   p_kst 1.952809e-03   p_cons 7.861236e-02   p_joint 1.592135e-03

Joint ci ratio: 1.035429e-01	ci left: 1.507655e-03	ci right 1.673357e-03	k: 1430	n:900000
Cons ci ratio: 1.414580e-02	ci left: 7.806032e-02	ci right 7.917350e-02	k: 70754	n:900000
KS ci ratio: 9.332131e-02	ci left: 1.865334e-03	ci right 2.049006e-03	k: 1760	n:900000
SOX21   900000 perm   411 sec   (2187 perm/sec)   p_kst 1.955556e-03   p_cons 7.861556e-02   p_joint 1.588889e-03

Joint ci ratio: 1.029689e-01	ci left: 1.508216e-03	ci right 1.673005e-03	k: 1446	n:910000
Cons ci ratio: 1.407172e-02	ci left: 7.802377e-02	ci right 7.913056e-02	k: 71504	n:910000
KS ci ratio: 9.279583e-02	ci left: 1.866303e-03	ci right 2.048979e-03	k: 1780	n:910000
SOX21   910000 perm   419 sec   (2171 perm/sec)   p_kst 1.956044e-03   p_cons 7.857582e-02   p_joint 1.589011e-03

Joint ci ratio: 1.023342e-01	ci left: 1.510885e-03	ci right 1.674887e-03	k: 1464	n:920000
Cons ci ratio: 1.399071e-02	ci left: 7.807146e-02	ci right 7.917250e-02	k: 72331	n:920000
KS ci ratio: 9.243353e-02	ci left: 1.860882e-03	ci right 2.042277e-03	k: 1794	n:920000
SOX21   920000 perm   427 sec   (2155 perm/sec)   p_kst 1.950000e-03   p_cons 7.862065e-02   p_joint 1.591304e-03

Joint ci ratio: 1.017799e-01	ci left: 1.511404e-03	ci right 1.674521e-03	k: 1480	n:930000
Cons ci ratio: 1.391345e-02	ci left: 7.809349e-02	ci right 7.918871e-02	k: 73135	n:930000
KS ci ratio: 9.204994e-02	ci left: 1.856629e-03	ci right 2.036818e-03	k: 1809	n:930000
SOX21   930000 perm   435 sec   (2140 perm/sec)   p_kst 1.945161e-03   p_cons 7.863978e-02   p_joint 1.591398e-03

Joint ci ratio: 1.012346e-01	ci left: 1.511914e-03	ci right 1.674160e-03	k: 1496	n:940000
Cons ci ratio: 1.383908e-02	ci left: 7.809810e-02	ci right 7.918748e-02	k: 73923	n:940000
KS ci ratio: 9.157060e-02	ci left: 1.856626e-03	ci right 2.035827e-03	k: 1828	n:940000
SOX21   940000 perm   443 sec   (2124 perm/sec)   p_kst 1.944681e-03   p_cons 7.864149e-02   p_joint 1.591489e-03

Joint ci ratio: 1.005980e-01	ci left: 1.515495e-03	ci right 1.677042e-03	k: 1515	n:950000
Cons ci ratio: 1.376939e-02	ci left: 7.806590e-02	ci right 7.914930e-02	k: 74676	n:950000
KS ci ratio: 9.085271e-02	ci left: 1.866913e-03	ci right 2.045619e-03	k: 1857	n:950000
SOX21   950000 perm   450 sec   (2110 perm/sec)   p_kst 1.954737e-03   p_cons 7.860632e-02   p_joint 1.594737e-03

Joint ci ratio: 1.001368e-01	ci left: 1.513926e-03	ci right 1.674522e-03	k: 1529	n:960000
Cons ci ratio: 1.369592e-02	ci left: 7.808527e-02	ci right 7.916311e-02	k: 75478	n:960000
KS ci ratio: 9.044003e-02	ci left: 1.864773e-03	ci right 2.042420e-03	k: 1874	n:960000
SOX21   960000 perm   458 sec   (2095 perm/sec)   p_kst 1.952083e-03   p_cons 7.862292e-02   p_joint 1.592708e-03

Joint ci ratio: 9.974662e-02	ci left: 1.510380e-03	ci right 1.669939e-03	k: 1541	n:970000
Cons ci ratio: 1.362497e-02	ci left: 7.808986e-02	ci right 7.916214e-02	k: 76266	n:970000
KS ci ratio: 8.996148e-02	ci left: 1.865702e-03	ci right 2.042448e-03	k: 1894	n:970000
SOX21   970000 perm   466 sec   (2081 perm/sec)   p_kst 1.952577e-03   p_cons 7.862474e-02   p_joint 1.588660e-03

Outputting figure to mutsig2_images.part000000000164/SOX21.2_835_970000_0.0019526_0.078625_0.0015887.png
                gene_name: SOX21
               theta_stop: 0.100 
                    nperm: 970000 
                     p_ks: 0.0020 
        ci_ks_bounds_left: 0.0019 
       ci_ks_bounds_right: 0.0020 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.0016 
     ci_joint_bounds_left: 0.0015 
    ci_joint_bounds_right: 0.0017 

Current progress: 95 percent done.
SOX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.148705e-01	ci left: 9.827781e-02	ci right 1.103538e-01	k: 1042	n:10000
Cons ci ratio: 1.300347e-01	ci left: 7.785885e-02	ci right 8.878533e-02	k: 832	n:10000
KS ci ratio: 1.232190e-01	ci left: 8.621021e-02	ci right 9.762881e-02	k: 918	n:10000
SOX3   10000 perm   1 sec   (7850 perm/sec)   p_kst 9.180000e-02   p_cons 8.320000e-02   p_joint 1.042000e-01

Joint ci ratio: 7.101623e-02	ci left: 1.274853e-01	ci right 1.369219e-01	k: 2643	n:20000
Cons ci ratio: 9.059276e-02	ci left: 8.170910e-02	ci right 8.951187e-02	k: 1711	n:20000
KS ci ratio: 8.625504e-02	ci left: 8.954852e-02	ci right 9.767008e-02	k: 1871	n:20000
SOX3   20000 perm   3 sec   (6829 perm/sec)   p_kst 9.355000e-02   p_cons 8.555000e-02   p_joint 1.321500e-01

Outputting figure to mutsig2_images.part000000000164/SOX3.2_1345_20000_0.09355_0.08555_0.13215.png
                gene_name: SOX3
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.094 
        ci_ks_bounds_left: 0.090 
       ci_ks_bounds_right: 0.098 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.082 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 96 percent done.
SP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.653285e-02	ci left: 4.053188e-01	ci right 4.247308e-01	k: 4150	n:10000
Cons ci ratio: 1.441001e-02	ci left: 8.744927e-01	ci right 8.872845e-01	k: 8810	n:10000
KS ci ratio: 1.925331e-01	ci left: 3.595770e-02	ci right 4.371330e-02	k: 397	n:10000
SP1   10000 perm   1 sec   (7211 perm/sec)   p_kst 3.970000e-02   p_cons 8.810000e-01   p_joint 4.150000e-01

Joint ci ratio: 2.898137e-02	ci left: 4.707560e-01	ci right 4.846504e-01	k: 9554	n:20000
Cons ci ratio: 1.096300e-02	ci left: 8.599323e-01	ci right 8.694614e-01	k: 17295	n:20000
KS ci ratio: 1.351748e-01	ci left: 3.761647e-02	ci right 4.311819e-02	k: 806	n:20000
SP1   20000 perm   3 sec   (6374 perm/sec)   p_kst 4.030000e-02   p_cons 8.647500e-01   p_joint 4.777000e-01

Joint ci ratio: 2.455286e-02	ci left: 4.536816e-01	ci right 4.649929e-01	k: 13780	n:30000
Cons ci ratio: 8.966948e-03	ci left: 8.604064e-01	ci right 8.681895e-01	k: 25930	n:30000
KS ci ratio: 1.089024e-01	ci left: 3.914111e-02	ci right 4.368158e-02	k: 1241	n:30000
SP1   30000 perm   5 sec   (6069 perm/sec)   p_kst 4.136667e-02   p_cons 8.643333e-01   p_joint 4.593333e-01

Joint ci ratio: 1.949762e-02	ci left: 4.976876e-01	ci right 5.075120e-01	k: 20104	n:40000
Cons ci ratio: 7.756670e-03	ci left: 8.612080e-01	ci right 8.679390e-01	k: 34584	n:40000
KS ci ratio: 9.479130e-02	ci left: 3.905325e-02	ci right 4.296375e-02	k: 1639	n:40000
SP1   40000 perm   7 sec   (5867 perm/sec)   p_kst 4.097500e-02   p_cons 8.646000e-01   p_joint 5.026000e-01

Outputting figure to mutsig2_images.part000000000164/SP1.2_2382_40000_0.040975_0.8646_0.5026.png
                gene_name: SP1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 98 percent done.
SP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.634707e-02	ci left: 6.796217e-01	ci right 6.978683e-01	k: 6888	n:10000
Cons ci ratio: 2.511849e-02	ci left: 6.998865e-01	ci right 7.177916e-01	k: 7089	n:10000
KS ci ratio: 1.038998e-01	ci left: 1.180892e-01	ci right 1.311304e-01	k: 1245	n:10000
SP8   10000 perm   1 sec   (7340 perm/sec)   p_kst 1.245000e-01   p_cons 7.089000e-01   p_joint 6.888000e-01

Joint ci ratio: 2.066188e-02	ci left: 6.361137e-01	ci right 6.494447e-01	k: 12856	n:20000
Cons ci ratio: 1.763932e-02	ci left: 7.054171e-01	ci right 7.180213e-01	k: 14235	n:20000
KS ci ratio: 7.442799e-02	ci left: 1.172484e-01	ci right 1.263619e-01	k: 2435	n:20000
SP8   20000 perm   3 sec   (6500 perm/sec)   p_kst 1.217500e-01   p_cons 7.117500e-01   p_joint 6.428000e-01

Outputting figure to mutsig2_images.part000000000164/SP8.2_1535_20000_0.12175_0.71175_0.6428.png
                gene_name: SP8
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000164
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 164 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9894151: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000165> was used as the working directory.
Started at Sat Oct  6 00:30:31 2012
Results reported at Sat Oct  6 02:52:04 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000165.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000165.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 165  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000165.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   8469.31 sec.
    Max Memory :      3647 MB
    Max Swap   :      5985 MB

    Max Processes  :         7
    Max Threads    :        70

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
165
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 165
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 165: processing genes 14786 - 14875
Calculating significance of each gene.
Using projection method.
14786	SPA17	1
14787	SPACA1	7.192752e-01
14788	SPACA3	1.731478e-01
14789	SPACA4	3.072095e-01
14790	SPAG1	1.338763e-01
14791	SPAG11A	1
14792	SPAG11B	1.864432e-02
14793	SPAG16	5.835018e-02
14794	SPAG17	5.260331e-04
14795	SPAG4	7.147624e-01
14796	SPAG5	3.913537e-01
14797	SPAG6	1.751509e-01
14798	SPAG7	1
14799	SPAG8	3.540956e-01
14800	SPAG9	7.629009e-01
14801	SPAM1	7.066944e-02
14802	SPANXC	1.225050e-01
14803	SPANXD	1
14804	SPANXE	4.698782e-01
14805	SPANXN1	1
14806	SPANXN2	5.687947e-01
14807	SPANXN3	4.495824e-01
14808	SPANXN4	2.110975e-01
14809	SPANXN5	1.919869e-01
14810	SPARC	1.862246e-01
14811	SPARCL1	4.622355e-01
14812	SPAST	3.080694e-01
14813	SPATA1	1.378555e-01
14814	SPATA12	3.692358e-01
14815	SPATA13	1.117439e-01
14816	SPATA16	3.113090e-03
14817	SPATA17	3.956790e-05
14818	SPATA18	2.686915e-01
14819	SPATA19	2.858508e-01
14820	SPATA2	9.077074e-01
14821	SPATA20	5.452742e-01
14822	SPATA21	1
14823	SPATA22	1.814806e-01
14824	SPATA2L	1
14825	SPATA4	1.365655e-01
14826	SPATA5	8.947772e-01
14827	SPATA5L1	7.819490e-01
14828	SPATA6	6.867661e-01
14829	SPATA7	8.922870e-01
14830	SPATA8	9.270294e-04
14831	SPATA9	1.218336e-01
14832	SPATC1	1
14833	SPATS1	1
14834	SPATS2	7.823064e-02
14835	SPATS2L	9.374625e-01
14836	SPC24	1
14837	SPC25	5.519627e-01
14838	SPCS1	2.673744e-01
14839	SPCS2	1.175125e-01
14840	SPCS3	7.065528e-01
14841	SPDEF	7.925054e-01
14842	SPDYA	6.502249e-02
14843	SPDYC	3.847060e-01
14844	SPDYE1	5.395909e-01
14845	SPDYE3	6.041581e-01
14846	SPDYE5	1
14847	SPEF1	7.778222e-01
14848	SPEF2	1.239574e-01
14849	SPEG	9.964111e-01
14850	SPEM1	7.154601e-01
14851	SPEN	7.075315e-01
14852	SPERT	3.173927e-01
14853	SPESP1	5.711896e-01
14854	SPG11	7.597084e-01
14855	SPG20	1.728589e-01
14856	SPG21	6.440345e-01
14857	SPG7	6.438403e-01
14858	SPHAR	1
14859	SPHK1	7.215693e-01
14860	SPHK2	9.737017e-01
14861	SPHKAP	5.059749e-02
14862	SPI1	2.571051e-01
14863	SPIB	1
14864	SPIC	1
14865	SPIN1	5.829034e-01
14866	SPIN2A	1
14867	SPIN2B	5.120165e-01
14868	SPIN3	6.608700e-01
14869	SPIN4	1
14870	SPINK1	1
14871	SPINK13	1
14872	SPINK14	3.080926e-01
14873	SPINK2	2.077038e-01
14874	SPINK4	1
14875	SPINK5	3.209368e-01
Done

Running MutSig 2:
Scatter job 165: processing genes 14786 - 14875
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SPAG17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.914541e-02	ci left: 2.960832e-01	ci right 3.142305e-01	k: 3051	n:10000
Cons ci ratio: 4.245605e-03	ci left: 9.862119e-01	ci right 9.904965e-01	k: 9885	n:10000
KS ci ratio: 7.387413e-02	ci left: 2.115188e-01	ci right 2.278448e-01	k: 2196	n:10000
SPAG17   10000 perm   3 sec   (3700 perm/sec)   p_kst 2.196000e-01   p_cons 9.885000e-01   p_joint 3.051000e-01

Outputting figure to mutsig2_images.part000000000165/SPAG17.25_6864_10000_0.2196_0.9885_0.3051.png
                gene_name: SPAG17
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 2 percent done.
SPEN
Processing conservation and coverage...
90% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.525308e-02	ci left: 5.429908e-01	ci right 5.625785e-01	k: 5528	n:10000
Cons ci ratio: 4.600981e-02	ci left: 4.107992e-01	ci right 4.302471e-01	k: 4205	n:10000
KS ci ratio: 4.048500e-02	ci left: 4.739612e-01	ci right 4.936482e-01	k: 4838	n:10000
SPEN   10000 perm   3 sec   (3342 perm/sec)   p_kst 4.838000e-01   p_cons 4.205000e-01   p_joint 5.528000e-01

Outputting figure to mutsig2_images.part000000000165/SPEN.23_11055_10000_0.4838_0.4205_0.5528.png
                gene_name: SPEN
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 4 percent done.
SPHKAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.996134e-02	ci left: 7.860396e-01	ci right 8.019887e-01	k: 7941	n:10000
KS ci ratio: 1.192157e-02	ci left: 9.097739e-01	ci right 9.207827e-01	k: 9154	n:10000
SPHKAP   10000 perm   2 sec   (4559 perm/sec)   p_kst 9.154000e-01   p_cons 7.941000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPHKAP.17_5151_10000_0.9154_0.7941_1.png
                gene_name: SPHKAP
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
SPEF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.501474e-02	ci left: 8.653957e-01	ci right 8.785868e-01	k: 8721	n:10000
Cons ci ratio: 4.460369e-02	ci left: 4.259515e-01	ci right 4.454860e-01	k: 4357	n:10000
KS ci ratio: 8.337419e-03	ci left: 9.526301e-01	ci right 9.607012e-01	k: 9568	n:10000
SPEF2   10000 perm   2 sec   (4688 perm/sec)   p_kst 9.568000e-01   p_cons 4.357000e-01   p_joint 8.721000e-01

Outputting figure to mutsig2_images.part000000000165/SPEF2.13_5638_10000_0.9568_0.4357_0.8721.png
                gene_name: SPEF2
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 8 percent done.
SPG11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.637301e-02	ci left: 2.499404e-01	ci right 2.672005e-01	k: 2585	n:10000
Cons ci ratio: 2.857317e-02	ci left: 6.435768e-01	ci right 6.623341e-01	k: 6530	n:10000
KS ci ratio: 8.808495e-02	ci left: 1.579697e-01	ci right 1.726258e-01	k: 1652	n:10000
SPG11   10000 perm   2 sec   (4199 perm/sec)   p_kst 1.652000e-01   p_cons 6.530000e-01   p_joint 2.585000e-01

Outputting figure to mutsig2_images.part000000000165/SPG11.12_7492_10000_0.1652_0.653_0.2585.png
                gene_name: SPG11
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 10 percent done.
SPINK5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.559385e-02	ci left: 6.920201e-01	ci right 7.100626e-01	k: 7011	n:10000
Cons ci ratio: 2.716135e-02	ci left: 6.663243e-01	ci right 6.847734e-01	k: 6756	n:10000
KS ci ratio: 4.083508e-02	ci left: 4.696656e-01	ci right 4.893464e-01	k: 4795	n:10000
SPINK5   10000 perm   2 sec   (4925 perm/sec)   p_kst 4.795000e-01   p_cons 6.756000e-01   p_joint 7.011000e-01

Outputting figure to mutsig2_images.part000000000165/SPINK5.12_3433_10000_0.4795_0.6756_0.7011.png
                gene_name: SPINK5
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 12 percent done.
SPATA17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.347668e-02	ci left: 7.272426e-01	ci right 7.446198e-01	k: 7360	n:10000
Cons ci ratio: 2.983253e-02	ci left: 6.236666e-01	ci right 6.426558e-01	k: 6332	n:10000
KS ci ratio: 2.935274e-02	ci left: 6.312063e-01	ci right 6.501117e-01	k: 6407	n:10000
SPATA17   10000 perm   2 sec   (6454 perm/sec)   p_kst 6.407000e-01   p_cons 6.332000e-01   p_joint 7.360000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA17.9_1126_10000_0.6407_0.6332_0.736.png
                gene_name: SPATA17
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 15 percent done.
SPAG16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.955063e-02	ci left: 6.280896e-01	ci right 6.470302e-01	k: 6376	n:10000
Cons ci ratio: 4.752422e-02	ci left: 3.951583e-01	ci right 4.144971e-01	k: 4048	n:10000
KS ci ratio: 3.490513e-02	ci left: 5.479000e-01	ci right 5.674664e-01	k: 5577	n:10000
SPAG16   10000 perm   2 sec   (5645 perm/sec)   p_kst 5.577000e-01   p_cons 4.048000e-01   p_joint 6.376000e-01

Outputting figure to mutsig2_images.part000000000165/SPAG16.8_1976_10000_0.5577_0.4048_0.6376.png
                gene_name: SPAG16
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 17 percent done.
SPAG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.424469e-02	ci left: 8.769477e-01	ci right 8.896281e-01	k: 8834	n:10000
Cons ci ratio: 4.595323e-02	ci left: 4.113971e-01	ci right 4.308489e-01	k: 4211	n:10000
KS ci ratio: 6.962823e-03	ci left: 9.659399e-01	ci right 9.727830e-01	k: 9695	n:10000
SPAG5   10000 perm   2 sec   (5415 perm/sec)   p_kst 9.695000e-01   p_cons 4.211000e-01   p_joint 8.834000e-01

Outputting figure to mutsig2_images.part000000000165/SPAG5.7_3678_10000_0.9695_0.4211_0.8834.png
                gene_name: SPAG5
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 19 percent done.
SPAG9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.716099e-02	ci left: 2.454909e-01	ci right 2.626525e-01	k: 2540	n:10000
Cons ci ratio: 4.494084e-02	ci left: 4.222622e-01	ci right 4.417774e-01	k: 4320	n:10000
KS ci ratio: 9.367929e-02	ci left: 1.419757e-01	ci right 1.560294e-01	k: 1489	n:10000
SPAG9   10000 perm   2 sec   (4926 perm/sec)   p_kst 1.489000e-01   p_cons 4.320000e-01   p_joint 2.540000e-01

Outputting figure to mutsig2_images.part000000000165/SPAG9.7_4086_10000_0.1489_0.432_0.254.png
                gene_name: SPAG9
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 21 percent done.
SPATA16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.069985e-02	ci left: 1.831396e-01	ci right 1.986409e-01	k: 1908	n:10000
Cons ci ratio: 1.404114e-01	ci left: 6.720239e-02	ci right 7.744844e-02	k: 722	n:10000
KS ci ratio: 2.213094e-02	ci left: 7.497846e-01	ci right 7.666647e-01	k: 7583	n:10000
SPATA16   10000 perm   2 sec   (6178 perm/sec)   p_kst 7.583000e-01   p_cons 7.220000e-02   p_joint 1.908000e-01

Joint ci ratio: 5.204776e-02	ci left: 2.151664e-01	ci right 2.267148e-01	k: 4418	n:20000
Cons ci ratio: 1.014994e-01	ci left: 6.586692e-02	ci right 7.295888e-02	k: 1387	n:20000
KS ci ratio: 1.544835e-02	ci left: 7.570436e-01	ci right 7.688799e-01	k: 15260	n:20000
SPATA16   20000 perm   4 sec   (5205 perm/sec)   p_kst 7.630000e-01   p_cons 6.935000e-02   p_joint 2.209000e-01

Joint ci ratio: 4.106604e-02	ci left: 2.281595e-01	ci right 2.377589e-01	k: 6988	n:30000
Cons ci ratio: 8.226056e-02	ci left: 6.746482e-02	ci right 7.328538e-02	k: 2110	n:30000
KS ci ratio: 1.274137e-02	ci left: 7.544543e-01	ci right 7.641621e-01	k: 22780	n:30000
SPATA16   30000 perm   6 sec   (5050 perm/sec)   p_kst 7.593333e-01   p_cons 7.033333e-02   p_joint 2.329333e-01

Outputting figure to mutsig2_images.part000000000165/SPATA16.7_1750_30000_0.75933_0.070333_0.23293.png
                gene_name: SPATA16
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 23 percent done.
SPAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.017375e-02	ci left: 6.183401e-01	ci right 6.373854e-01	k: 6279	n:10000
Cons ci ratio: 4.556899e-02	ci left: 4.154834e-01	ci right 4.349602e-01	k: 4252	n:10000
KS ci ratio: 4.111420e-02	ci left: 4.662695e-01	ci right 4.859444e-01	k: 4761	n:10000
SPAG1   10000 perm   2 sec   (5770 perm/sec)   p_kst 4.761000e-01   p_cons 4.252000e-01   p_joint 6.279000e-01

Outputting figure to mutsig2_images.part000000000165/SPAG1.6_2853_10000_0.4761_0.4252_0.6279.png
                gene_name: SPAG1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 25 percent done.
SPAG6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.406402e-02	ci left: 5.599267e-01	ci right 5.794327e-01	k: 5697	n:10000
Cons ci ratio: 2.716135e-02	ci left: 6.663243e-01	ci right 6.847734e-01	k: 6756	n:10000
KS ci ratio: 4.379671e-02	ci left: 4.349276e-01	ci right 4.545046e-01	k: 4447	n:10000
SPAG6   10000 perm   2 sec   (5590 perm/sec)   p_kst 4.447000e-01   p_cons 6.756000e-01   p_joint 5.697000e-01

Outputting figure to mutsig2_images.part000000000165/SPAG6.6_1574_10000_0.4447_0.6756_0.5697.png
                gene_name: SPAG6
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 27 percent done.
SPATA13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.640648e-01	ci left: 4.955445e-02	ci right 5.850759e-02	k: 539	n:10000
Cons ci ratio: 1.572531e-01	ci left: 5.388306e-02	ci right 6.317620e-02	k: 584	n:10000
KS ci ratio: 1.331998e-01	ci left: 7.436791e-02	ci right 8.507844e-02	k: 796	n:10000
SPATA13   10000 perm   2 sec   (5630 perm/sec)   p_kst 7.960000e-02   p_cons 5.840000e-02   p_joint 5.390000e-02

Joint ci ratio: 1.036418e-01	ci left: 6.328032e-02	ci right 7.024628e-02	k: 1334	n:20000
Cons ci ratio: 1.113489e-01	ci left: 5.509208e-02	ci right 6.163705e-02	k: 1166	n:20000
KS ci ratio: 9.741266e-02	ci left: 7.124000e-02	ci right 7.858416e-02	k: 1497	n:20000
SPATA13   20000 perm   4 sec   (5132 perm/sec)   p_kst 7.485000e-02   p_cons 5.830000e-02   p_joint 6.670000e-02

Joint ci ratio: 9.043755e-02	ci left: 5.626197e-02	ci right 6.162384e-02	k: 1767	n:30000
Cons ci ratio: 9.049195e-02	ci left: 5.619672e-02	ci right 6.155577e-02	k: 1765	n:30000
KS ci ratio: 7.881951e-02	ci left: 7.315672e-02	ci right 7.919233e-02	k: 2284	n:30000
SPATA13   30000 perm   6 sec   (4864 perm/sec)   p_kst 7.613333e-02   p_cons 5.883333e-02   p_joint 5.890000e-02

Outputting figure to mutsig2_images.part000000000165/SPATA13.6_3882_30000_0.076133_0.058833_0.0589.png
                gene_name: SPATA13
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.059 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.062 

Current progress: 29 percent done.
SPATA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.178768e-02	ci left: 4.581808e-01	ci right 4.778379e-01	k: 4680	n:10000
Cons ci ratio: 1.164260e-02	ci left: 9.134796e-01	ci right 9.242749e-01	k: 9190	n:10000
KS ci ratio: 5.321015e-02	ci left: 3.423355e-01	ci right 3.611510e-01	k: 3517	n:10000
SPATA4   10000 perm   2 sec   (6423 perm/sec)   p_kst 3.517000e-01   p_cons 9.190000e-01   p_joint 4.680000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA4.6_942_10000_0.3517_0.919_0.468.png
                gene_name: SPATA4
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 31 percent done.
SPEG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.350785e-01	ci left: 1.123901e-02	ci right 1.585081e-02	k: 134	n:10000
Cons ci ratio: 1.626371e-01	ci left: 5.041952e-02	ci right 5.944196e-02	k: 548	n:10000
KS ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
SPEG   10000 perm   2 sec   (4009 perm/sec)   p_kst 1.200000e-03   p_cons 5.480000e-02   p_joint 1.340000e-02

Joint ci ratio: 3.509248e-01	ci left: 5.113783e-03	ci right 7.333458e-03	k: 123	n:20000
Cons ci ratio: 1.148384e-01	ci left: 5.188028e-02	ci right 5.824985e-02	k: 1100	n:20000
KS ci ratio: 7.834903e-01	ci left: 7.690092e-04	ci right 1.784982e-03	k: 24	n:20000
SPEG   20000 perm   5 sec   (3704 perm/sec)   p_kst 1.200000e-03   p_cons 5.500000e-02   p_joint 6.150000e-03

Joint ci ratio: 3.601489e-01	ci left: 3.226442e-03	ci right 4.672237e-03	k: 117	n:30000
Cons ci ratio: 9.399194e-02	ci left: 5.221858e-02	ci right 5.740139e-02	k: 1643	n:30000
KS ci ratio: 7.275617e-01	ci left: 6.202800e-04	ci right 1.348646e-03	k: 28	n:30000
SPEG   30000 perm   8 sec   (3586 perm/sec)   p_kst 9.333333e-04   p_cons 5.476667e-02   p_joint 3.900000e-03

Joint ci ratio: 3.419265e-01	ci left: 2.716059e-03	ci right 3.857935e-03	k: 130	n:40000
Cons ci ratio: 8.404911e-02	ci left: 4.940321e-02	ci right 5.376218e-02	k: 2062	n:40000
KS ci ratio: 6.194887e-01	ci left: 6.934093e-04	ci right 1.332619e-03	k: 39	n:40000
SPEG   40000 perm   11 sec   (3510 perm/sec)   p_kst 9.750000e-04   p_cons 5.155000e-02   p_joint 3.250000e-03

Joint ci ratio: 3.164248e-01	ci left: 2.576504e-03	ci right 3.562591e-03	k: 152	n:50000
Cons ci ratio: 7.783378e-02	ci left: 4.639775e-02	ci right 5.017492e-02	k: 2413	n:50000
KS ci ratio: 5.715163e-01	ci left: 6.736319e-04	ci right 1.226963e-03	k: 46	n:50000
SPEG   50000 perm   14 sec   (3454 perm/sec)   p_kst 9.200000e-04   p_cons 4.826000e-02   p_joint 3.040000e-03

Joint ci ratio: 3.085220e-01	ci left: 2.269907e-03	ci right 3.112677e-03	k: 160	n:60000
Cons ci ratio: 7.126972e-02	ci left: 4.628672e-02	ci right 4.972383e-02	k: 2879	n:60000
KS ci ratio: 5.433661e-01	ci left: 6.329443e-04	ci right 1.117443e-03	k: 51	n:60000
SPEG   60000 perm   18 sec   (3403 perm/sec)   p_kst 8.500000e-04   p_cons 4.798333e-02   p_joint 2.666667e-03

Joint ci ratio: 3.358081e-01	ci left: 1.617222e-03	ci right 2.282293e-03	k: 135	n:70000
Cons ci ratio: 6.787158e-02	ci left: 4.393981e-02	ci right 4.704087e-02	k: 3183	n:70000
KS ci ratio: 4.859869e-01	ci left: 7.041804e-04	ci right 1.167375e-03	k: 64	n:70000
SPEG   70000 perm   21 sec   (3356 perm/sec)   p_kst 9.142857e-04   p_cons 4.547143e-02   p_joint 1.928571e-03

Joint ci ratio: 3.275117e-01	ci left: 1.495268e-03	ci right 2.091794e-03	k: 142	n:80000
Cons ci ratio: 6.347766e-02	ci left: 4.405384e-02	ci right 4.695423e-02	k: 3639	n:80000
KS ci ratio: 4.380474e-01	ci left: 7.818886e-04	ci right 1.230570e-03	k: 79	n:80000
SPEG   80000 perm   24 sec   (3308 perm/sec)   p_kst 9.875000e-04   p_cons 4.548750e-02   p_joint 1.775000e-03

Joint ci ratio: 3.561220e-01	ci left: 1.105586e-03	ci right 1.594132e-03	k: 120	n:90000
Cons ci ratio: 6.000101e-02	ci left: 4.391761e-02	ci right 4.664513e-02	k: 4074	n:90000
KS ci ratio: 4.176667e-01	ci left: 7.743306e-04	ci right 1.192245e-03	k: 87	n:90000
SPEG   90000 perm   27 sec   (3276 perm/sec)   p_kst 9.666667e-04   p_cons 4.526667e-02   p_joint 1.333333e-03

Joint ci ratio: 3.476211e-01	ci left: 1.049719e-03	ci right 1.500010e-03	k: 126	n:100000
Cons ci ratio: 5.705263e-02	ci left: 4.379240e-02	ci right 4.637407e-02	k: 4507	n:100000
KS ci ratio: 3.957837e-01	ci left: 7.866729e-04	ci right 1.183192e-03	k: 97	n:100000
SPEG   100000 perm   31 sec   (3233 perm/sec)   p_kst 9.700000e-04   p_cons 4.507000e-02   p_joint 1.260000e-03

Joint ci ratio: 3.490197e-01	ci left: 9.459849e-04	ci right 1.353779e-03	k: 125	n:110000
Cons ci ratio: 5.452897e-02	ci left: 4.364781e-02	ci right 4.610353e-02	k: 4935	n:110000
KS ci ratio: 3.842041e-01	ci left: 7.643526e-04	ci right 1.135500e-03	k: 103	n:110000
SPEG   110000 perm   34 sec   (3194 perm/sec)   p_kst 9.363636e-04   p_cons 4.486364e-02   p_joint 1.136364e-03

Joint ci ratio: 3.177512e-01	ci left: 1.065734e-03	ci right 1.475646e-03	k: 151	n:120000
Cons ci ratio: 5.075285e-02	ci left: 4.615512e-02	ci right 4.856682e-02	k: 5682	n:120000
KS ci ratio: 3.576649e-01	ci left: 8.215801e-04	ci right 1.186561e-03	k: 119	n:120000
SPEG   120000 perm   39 sec   (3114 perm/sec)   p_kst 9.916667e-04   p_cons 4.735000e-02   p_joint 1.258333e-03

Joint ci ratio: 2.057428e-01	ci left: 2.498160e-03	ci right 3.078218e-03	k: 361	n:130000
Cons ci ratio: 4.887681e-02	ci left: 4.599266e-02	ci right 4.830452e-02	k: 6128	n:130000
KS ci ratio: 3.372034e-01	ci left: 8.637093e-04	ci right 1.220689e-03	k: 134	n:130000
SPEG   130000 perm   42 sec   (3079 perm/sec)   p_kst 1.030769e-03   p_cons 4.713846e-02   p_joint 2.776923e-03

Joint ci ratio: 2.005535e-01	ci left: 2.448525e-03	ci right 3.000963e-03	k: 380	n:140000
Cons ci ratio: 4.704081e-02	ci left: 4.614440e-02	ci right 4.837440e-02	k: 6615	n:140000
KS ci ratio: 3.253685e-01	ci left: 8.675055e-04	ci right 1.210843e-03	k: 144	n:140000
SPEG   140000 perm   46 sec   (3049 perm/sec)   p_kst 1.028571e-03   p_cons 4.725000e-02   p_joint 2.714286e-03

Joint ci ratio: 1.979837e-01	ci left: 2.348618e-03	ci right 2.870904e-03	k: 390	n:150000
Cons ci ratio: 4.546450e-02	ci left: 4.614543e-02	ci right 4.829878e-02	k: 7082	n:150000
KS ci ratio: 3.126853e-01	ci left: 8.832698e-04	ci right 1.216501e-03	k: 156	n:150000
SPEG   150000 perm   50 sec   (3017 perm/sec)   p_kst 1.040000e-03   p_cons 4.721333e-02   p_joint 2.600000e-03

Joint ci ratio: 1.921749e-01	ci left: 2.344503e-03	ci right 2.848790e-03	k: 414	n:160000
Cons ci ratio: 4.398174e-02	ci left: 4.625875e-02	ci right 4.834519e-02	k: 7567	n:160000
KS ci ratio: 3.004896e-01	ci left: 9.030691e-04	ci right 1.227947e-03	k: 169	n:160000
SPEG   160000 perm   54 sec   (2985 perm/sec)   p_kst 1.056250e-03   p_cons 4.729375e-02   p_joint 2.587500e-03

Joint ci ratio: 1.903591e-01	ci left: 2.251386e-03	ci right 2.730538e-03	k: 422	n:170000
Cons ci ratio: 4.274954e-02	ci left: 4.612101e-02	ci right 4.814153e-02	k: 8011	n:170000
KS ci ratio: 2.912153e-01	ci left: 9.098528e-04	ci right 1.225208e-03	k: 180	n:170000
SPEG   170000 perm   58 sec   (2948 perm/sec)   p_kst 1.058824e-03   p_cons 4.712353e-02   p_joint 2.482353e-03

Joint ci ratio: 1.858049e-01	ci left: 2.237482e-03	ci right 2.700997e-03	k: 443	n:180000
Cons ci ratio: 4.156899e-02	ci left: 4.609833e-02	ci right 4.806074e-02	k: 8473	n:180000
KS ci ratio: 2.820157e-01	ci left: 9.211819e-04	ci right 1.228584e-03	k: 192	n:180000
SPEG   180000 perm   62 sec   (2919 perm/sec)   p_kst 1.066667e-03   p_cons 4.707222e-02   p_joint 2.461111e-03

Joint ci ratio: 1.837543e-01	ci left: 2.169909e-03	ci right 2.613912e-03	k: 453	n:190000
Cons ci ratio: 4.046451e-02	ci left: 4.611521e-02	ci right 4.802496e-02	k: 8942	n:190000
KS ci ratio: 2.743068e-01	ci left: 9.265564e-04	ci right 1.225844e-03	k: 203	n:190000
SPEG   190000 perm   66 sec   (2886 perm/sec)   p_kst 1.068421e-03   p_cons 4.706316e-02   p_joint 2.384211e-03

Joint ci ratio: 1.807960e-01	ci left: 2.132988e-03	ci right 2.561640e-03	k: 468	n:200000
Cons ci ratio: 3.941727e-02	ci left: 4.619046e-02	ci right 4.805269e-02	k: 9423	n:200000
KS ci ratio: 2.690833e-01	ci left: 9.175035e-04	ci right 1.207271e-03	k: 211	n:200000
SPEG   200000 perm   70 sec   (2858 perm/sec)   p_kst 1.055000e-03   p_cons 4.711500e-02   p_joint 2.340000e-03

Joint ci ratio: 1.829693e-01	ci left: 1.981407e-03	ci right 2.384913e-03	k: 457	n:210000
Cons ci ratio: 3.853726e-02	ci left: 4.605152e-02	ci right 4.786578e-02	k: 9860	n:210000
KS ci ratio: 2.629534e-01	ci left: 9.182568e-04	ci right 1.200569e-03	k: 221	n:210000
SPEG   210000 perm   74 sec   (2826 perm/sec)   p_kst 1.052381e-03   p_cons 4.695238e-02   p_joint 2.176190e-03

Joint ci ratio: 1.791013e-01	ci left: 1.978132e-03	ci right 2.371532e-03	k: 477	n:220000
Cons ci ratio: 3.767338e-02	ci left: 4.602023e-02	ci right 4.779173e-02	k: 10318	n:220000
KS ci ratio: 2.577810e-01	ci left: 9.147571e-04	ci right 1.189571e-03	k: 230	n:220000
SPEG   220000 perm   79 sec   (2799 perm/sec)   p_kst 1.045455e-03   p_cons 4.690000e-02   p_joint 2.168182e-03

Joint ci ratio: 1.886423e-01	ci left: 1.697154e-03	ci right 2.054717e-03	k: 430	n:230000
Cons ci ratio: 3.681495e-02	ci left: 4.611275e-02	ci right 4.784651e-02	k: 10804	n:230000
KS ci ratio: 2.513347e-01	ci left: 9.238314e-04	ci right 1.193345e-03	k: 242	n:230000
SPEG   230000 perm   83 sec   (2772 perm/sec)   p_kst 1.052174e-03   p_cons 4.697391e-02   p_joint 1.869565e-03

Joint ci ratio: 1.943813e-01	ci left: 1.527253e-03	ci right 1.859967e-03	k: 405	n:240000
Cons ci ratio: 3.601432e-02	ci left: 4.619385e-02	ci right 4.789211e-02	k: 11289	n:240000
KS ci ratio: 2.402169e-01	ci left: 9.752757e-04	ci right 1.245339e-03	k: 265	n:240000
SPEG   240000 perm   87 sec   (2745 perm/sec)   p_kst 1.104167e-03   p_cons 4.703750e-02   p_joint 1.687500e-03

Joint ci ratio: 2.058810e-01	ci left: 1.298958e-03	ci right 1.600790e-03	k: 361	n:250000
Cons ci ratio: 3.434469e-02	ci left: 4.867676e-02	ci right 5.038170e-02	k: 12381	n:250000
KS ci ratio: 2.362544e-01	ci left: 9.701156e-04	ci right 1.233670e-03	k: 274	n:250000
SPEG   250000 perm   92 sec   (2719 perm/sec)   p_kst 1.096000e-03   p_cons 4.952400e-02   p_joint 1.444000e-03

Joint ci ratio: 2.022815e-01	ci left: 1.296443e-03	ci right 1.591773e-03	k: 374	n:260000
Cons ci ratio: 3.364240e-02	ci left: 4.879144e-02	ci right 5.046477e-02	k: 12902	n:260000
KS ci ratio: 2.324817e-01	ci left: 9.653862e-04	ci right 1.222866e-03	k: 283	n:260000
SPEG   260000 perm   97 sec   (2694 perm/sec)   p_kst 1.088462e-03   p_cons 4.962308e-02   p_joint 1.438462e-03

Joint ci ratio: 2.166448e-01	ci left: 1.079950e-03	ci right 1.345758e-03	k: 326	n:270000
Cons ci ratio: 3.298280e-02	ci left: 4.889427e-02	ci right 5.053763e-02	k: 13422	n:270000
KS ci ratio: 2.288841e-01	ci left: 9.610380e-04	ci right 1.212832e-03	k: 292	n:270000
SPEG   270000 perm   101 sec   (2669 perm/sec)   p_kst 1.081481e-03   p_cons 4.971111e-02   p_joint 1.207407e-03

Joint ci ratio: 2.200441e-01	ci left: 1.007615e-03	ci right 1.260037e-03	k: 316	n:280000
Cons ci ratio: 3.240580e-02	ci left: 4.885893e-02	ci right 5.047184e-02	k: 13905	n:280000
KS ci ratio: 2.254486e-01	ci left: 9.570288e-04	ci right 1.203485e-03	k: 301	n:280000
SPEG   280000 perm   106 sec   (2645 perm/sec)   p_kst 1.075000e-03   p_cons 4.966071e-02   p_joint 1.128571e-03

Joint ci ratio: 2.127803e-01	ci left: 1.044623e-03	ci right 1.296551e-03	k: 338	n:290000
Cons ci ratio: 3.365543e-02	ci left: 4.393705e-02	ci right 4.544448e-02	k: 12959	n:290000
KS ci ratio: 2.228818e-01	ci left: 9.468099e-04	ci right 1.187478e-03	k: 308	n:290000
SPEG   290000 perm   111 sec   (2622 perm/sec)   p_kst 1.062069e-03   p_cons 4.468621e-02   p_joint 1.165517e-03

Joint ci ratio: 2.109240e-01	ci left: 1.028740e-03	ci right 1.274393e-03	k: 344	n:300000
Cons ci ratio: 3.307542e-02	ci left: 4.398643e-02	ci right 4.546905e-02	k: 13417	n:300000
KS ci ratio: 2.186756e-01	ci left: 9.530381e-04	ci right 1.190103e-03	k: 320	n:300000
SPEG   300000 perm   116 sec   (2597 perm/sec)   p_kst 1.066667e-03   p_cons 4.472333e-02   p_joint 1.146667e-03

Joint ci ratio: 2.064818e-01	ci left: 1.041414e-03	ci right 1.284195e-03	k: 359	n:310000
Cons ci ratio: 3.253790e-02	ci left: 4.399762e-02	ci right 4.545607e-02	k: 13864	n:310000
KS ci ratio: 2.156737e-01	ci left: 9.497479e-04	ci right 1.182322e-03	k: 329	n:310000
SPEG   310000 perm   121 sec   (2571 perm/sec)   p_kst 1.061290e-03   p_cons 4.472258e-02   p_joint 1.158065e-03

Joint ci ratio: 2.039490e-01	ci left: 1.035549e-03	ci right 1.273633e-03	k: 368	n:320000
Cons ci ratio: 3.195804e-02	ci left: 4.418816e-02	ci right 4.562634e-02	k: 14369	n:320000
KS ci ratio: 2.118557e-01	ci left: 9.555611e-04	ci right 1.184879e-03	k: 341	n:320000
SPEG   320000 perm   126 sec   (2549 perm/sec)   p_kst 1.065625e-03   p_cons 4.490313e-02   p_joint 1.150000e-03

Joint ci ratio: 2.042298e-01	ci left: 1.001292e-03	ci right 1.231855e-03	k: 367	n:330000
Cons ci ratio: 3.147350e-02	ci left: 4.418993e-02	ci right 4.560596e-02	k: 14815	n:330000
KS ci ratio: 2.103256e-01	ci left: 9.409545e-04	ci right 1.164925e-03	k: 346	n:330000
SPEG   330000 perm   131 sec   (2525 perm/sec)   p_kst 1.048485e-03   p_cons 4.489394e-02   p_joint 1.112121e-03

Joint ci ratio: 2.034049e-01	ci left: 9.802140e-04	ci right 1.204899e-03	k: 370	n:340000
Cons ci ratio: 3.102527e-02	ci left: 4.415087e-02	ci right 4.554514e-02	k: 15247	n:340000
KS ci ratio: 2.073591e-01	ci left: 9.411530e-04	ci right 1.161611e-03	k: 356	n:340000
SPEG   340000 perm   136 sec   (2500 perm/sec)   p_kst 1.047059e-03   p_cons 4.484412e-02   p_joint 1.088235e-03

Joint ci ratio: 2.050749e-01	ci left: 9.359395e-04	ci right 1.152458e-03	k: 364	n:350000
Cons ci ratio: 3.053962e-02	ci left: 4.427017e-02	ci right 4.564595e-02	k: 15734	n:350000
KS ci ratio: 2.036831e-01	ci left: 9.494948e-04	ci right 1.167473e-03	k: 369	n:350000
SPEG   350000 perm   142 sec   (2473 perm/sec)   p_kst 1.054286e-03   p_cons 4.495429e-02   p_joint 1.040000e-03

Joint ci ratio: 2.012506e-01	ci left: 9.468524e-04	ci right 1.161309e-03	k: 378	n:360000
Cons ci ratio: 3.010913e-02	ci left: 4.428924e-02	ci right 4.564587e-02	k: 16187	n:360000
KS ci ratio: 2.001958e-01	ci left: 9.574056e-04	ci right 1.172977e-03	k: 382	n:360000
SPEG   360000 perm   147 sec   (2452 perm/sec)   p_kst 1.061111e-03   p_cons 4.496389e-02   p_joint 1.050000e-03

Joint ci ratio: 1.986471e-01	ci left: 9.469358e-04	ci right 1.158301e-03	k: 388	n:370000
Cons ci ratio: 2.967581e-02	ci left: 4.436645e-02	ci right 4.570555e-02	k: 16662	n:370000
KS ci ratio: 1.983920e-01	ci left: 9.495043e-04	ci right 1.161137e-03	k: 389	n:370000
SPEG   370000 perm   152 sec   (2431 perm/sec)   p_kst 1.051351e-03   p_cons 4.503243e-02   p_joint 1.048649e-03

Joint ci ratio: 1.994211e-01	ci left: 9.145136e-04	ci right 1.119534e-03	k: 385	n:380000
Cons ci ratio: 2.928574e-02	ci left: 4.436655e-02	ci right 4.568776e-02	k: 17109	n:380000
KS ci ratio: 1.949233e-01	ci left: 9.595460e-04	ci right 1.169234e-03	k: 403	n:380000
SPEG   380000 perm   158 sec   (2410 perm/sec)   p_kst 1.060526e-03   p_cons 4.502368e-02   p_joint 1.013158e-03

Joint ci ratio: 2.012588e-01	ci left: 8.740143e-04	ci right 1.071982e-03	k: 378	n:390000
Cons ci ratio: 2.888999e-02	ci left: 4.442788e-02	ci right 4.573274e-02	k: 17580	n:390000
KS ci ratio: 1.918603e-01	ci left: 9.666621e-04	ci right 1.174199e-03	k: 416	n:390000
SPEG   390000 perm   163 sec   (2390 perm/sec)   p_kst 1.066667e-03   p_cons 4.507692e-02   p_joint 9.692308e-04

Joint ci ratio: 1.999454e-01	ci left: 8.640356e-04	ci right 1.058310e-03	k: 383	n:400000
Cons ci ratio: 2.854714e-02	ci left: 4.437452e-02	ci right 4.566209e-02	k: 18006	n:400000
KS ci ratio: 1.900467e-01	ci left: 9.615392e-04	ci right 1.165799e-03	k: 424	n:400000
SPEG   400000 perm   169 sec   (2365 perm/sec)   p_kst 1.060000e-03   p_cons 4.501500e-02   p_joint 9.575000e-04

Joint ci ratio: 2.346041e-01	ci left: 6.007008e-04	ci right 7.625884e-04	k: 278	n:410000
Cons ci ratio: 2.819700e-02	ci left: 4.438199e-02	ci right 4.565372e-02	k: 18456	n:410000
KS ci ratio: 1.869910e-01	ci left: 9.706224e-04	ci right 1.173120e-03	k: 438	n:410000
SPEG   410000 perm   175 sec   (2344 perm/sec)   p_kst 1.068293e-03   p_cons 4.501463e-02   p_joint 6.780488e-04

Joint ci ratio: 2.183690e-01	ci left: 6.829815e-04	ci right 8.525996e-04	k: 321	n:420000
Cons ci ratio: 2.713398e-02	ci left: 4.669779e-02	ci right 4.798466e-02	k: 19882	n:420000
KS ci ratio: 1.848971e-01	ci left: 9.702135e-04	ci right 1.170106e-03	k: 448	n:420000
SPEG   420000 perm   181 sec   (2324 perm/sec)   p_kst 1.066667e-03   p_cons 4.733810e-02   p_joint 7.642857e-04

Joint ci ratio: 2.258657e-01	ci left: 6.209749e-04	ci right 7.812258e-04	k: 300	n:430000
Cons ci ratio: 2.682243e-02	ci left: 4.668589e-02	ci right 4.795743e-02	k: 20347	n:430000
KS ci ratio: 1.824745e-01	ci left: 9.742744e-04	ci right 1.172082e-03	k: 460	n:430000
SPEG   430000 perm   186 sec   (2306 perm/sec)   p_kst 1.069767e-03   p_cons 4.731860e-02   p_joint 6.976744e-04

Joint ci ratio: 2.262439e-01	ci left: 6.047172e-04	ci right 7.610703e-04	k: 299	n:440000
Cons ci ratio: 2.652270e-02	ci left: 4.667009e-02	ci right 4.792678e-02	k: 20810	n:440000
KS ci ratio: 1.799544e-01	ci left: 9.803374e-04	ci right 1.176328e-03	k: 473	n:440000
SPEG   440000 perm   192 sec   (2287 perm/sec)   p_kst 1.075000e-03   p_cons 4.729545e-02   p_joint 6.795455e-04

Joint ci ratio: 2.273861e-01	ci left: 5.849905e-04	ci right 7.371138e-04	k: 296	n:450000
Cons ci ratio: 2.622957e-02	ci left: 4.666612e-02	ci right 4.790861e-02	k: 21278	n:450000
KS ci ratio: 1.777186e-01	ci left: 9.840253e-04	ci right 1.178046e-03	k: 485	n:450000
SPEG   450000 perm   198 sec   (2269 perm/sec)   p_kst 1.077778e-03   p_cons 4.728444e-02   p_joint 6.577778e-04

Joint ci ratio: 2.313178e-01	ci left: 5.517819e-04	ci right 6.981052e-04	k: 286	n:460000
Cons ci ratio: 2.591968e-02	ci left: 4.675313e-02	ci right 4.798301e-02	k: 21788	n:460000
KS ci ratio: 1.762742e-01	ci left: 9.792540e-04	ci right 1.170598e-03	k: 493	n:460000
SPEG   460000 perm   204 sec   (2251 perm/sec)   p_kst 1.071739e-03   p_cons 4.736522e-02   p_joint 6.217391e-04

Joint ci ratio: 2.285473e-01	ci left: 5.540777e-04	ci right 6.990018e-04	k: 293	n:470000
Cons ci ratio: 2.562958e-02	ci left: 4.680480e-02	ci right 4.802206e-02	k: 22283	n:470000
KS ci ratio: 1.743438e-01	ci left: 9.807962e-04	ci right 1.170122e-03	k: 504	n:470000
SPEG   470000 perm   211 sec   (2232 perm/sec)   p_kst 1.072340e-03   p_cons 4.741064e-02   p_joint 6.234043e-04

Joint ci ratio: 2.289387e-01	ci left: 5.405700e-04	ci right 6.822374e-04	k: 292	n:480000
Cons ci ratio: 2.536244e-02	ci left: 4.680677e-02	ci right 4.801120e-02	k: 22755	n:480000
KS ci ratio: 1.729795e-01	ci left: 9.763050e-04	ci right 1.163135e-03	k: 512	n:480000
SPEG   480000 perm   217 sec   (2214 perm/sec)   p_kst 1.066667e-03   p_cons 4.740625e-02   p_joint 6.083333e-04

Joint ci ratio: 2.251282e-01	ci left: 5.487859e-04	ci right 6.898806e-04	k: 302	n:490000
Cons ci ratio: 2.511484e-02	ci left: 4.676814e-02	ci right 4.795966e-02	k: 23207	n:490000
KS ci ratio: 1.709910e-01	ci left: 9.798162e-04	ci right 1.164940e-03	k: 524	n:490000
SPEG   490000 perm   223 sec   (2197 perm/sec)   p_kst 1.069388e-03   p_cons 4.736122e-02   p_joint 6.163265e-04

Joint ci ratio: 1.549735e-01	ci left: 1.178952e-03	ci right 1.378899e-03	k: 638	n:500000
Cons ci ratio: 2.486994e-02	ci left: 4.674702e-02	ci right 4.792623e-02	k: 23667	n:500000
KS ci ratio: 1.687552e-01	ci left: 9.870298e-04	ci right 1.170830e-03	k: 538	n:500000
SPEG   500000 perm   229 sec   (2180 perm/sec)   p_kst 1.076000e-03   p_cons 4.733400e-02   p_joint 1.276000e-03

Joint ci ratio: 1.550970e-01	ci left: 1.153949e-03	ci right 1.349827e-03	k: 637	n:510000
Cons ci ratio: 2.463636e-02	ci left: 4.671119e-02	ci right 4.787827e-02	k: 24119	n:510000
KS ci ratio: 1.663040e-01	ci left: 9.977339e-04	ci right 1.180559e-03	k: 554	n:510000
SPEG   510000 perm   236 sec   (2161 perm/sec)   p_kst 1.086275e-03   p_cons 4.729216e-02   p_joint 1.249020e-03

Joint ci ratio: 1.549773e-01	ci left: 1.133605e-03	ci right 1.325867e-03	k: 638	n:520000
Cons ci ratio: 2.438320e-02	ci left: 4.677239e-02	ci right 4.792882e-02	k: 24621	n:520000
KS ci ratio: 1.687587e-01	ci left: 9.490655e-04	ci right 1.125800e-03	k: 538	n:520000
SPEG   520000 perm   243 sec   (2141 perm/sec)   p_kst 1.034615e-03   p_cons 4.734808e-02   p_joint 1.226923e-03

Joint ci ratio: 1.559597e-01	ci left: 1.097708e-03	ci right 1.285172e-03	k: 630	n:530000
Cons ci ratio: 2.414879e-02	ci left: 4.679006e-02	ci right 4.793565e-02	k: 25101	n:530000
KS ci ratio: 1.675204e-01	ci left: 9.456176e-04	ci right 1.120288e-03	k: 546	n:530000
SPEG   530000 perm   249 sec   (2125 perm/sec)   p_kst 1.030189e-03   p_cons 4.736038e-02   p_joint 1.188679e-03

Joint ci ratio: 1.542575e-01	ci left: 1.102300e-03	ci right 1.288303e-03	k: 644	n:540000
Cons ci ratio: 2.393772e-02	ci left: 4.674452e-02	ci right 4.787886e-02	k: 25547	n:540000
KS ci ratio: 1.660099e-01	ci left: 9.458518e-04	ci right 1.118833e-03	k: 556	n:540000
SPEG   540000 perm   256 sec   (2109 perm/sec)   p_kst 1.029630e-03   p_cons 4.730926e-02   p_joint 1.192593e-03

Joint ci ratio: 1.530757e-01	ci left: 1.099741e-03	ci right 1.283760e-03	k: 654	n:550000
Cons ci ratio: 2.371629e-02	ci left: 4.676035e-02	ci right 4.788443e-02	k: 26026	n:550000
KS ci ratio: 1.645395e-01	ci left: 9.460843e-04	ci right 1.117423e-03	k: 566	n:550000
SPEG   550000 perm   263 sec   (2094 perm/sec)   p_kst 1.029091e-03   p_cons 4.732000e-02   p_joint 1.189091e-03

Joint ci ratio: 1.543807e-01	ci left: 1.061213e-03	ci right 1.240440e-03	k: 643	n:560000
Cons ci ratio: 2.350974e-02	ci left: 4.674191e-02	ci right 4.785563e-02	k: 26486	n:560000
KS ci ratio: 1.626847e-01	ci left: 9.514540e-04	ci right 1.121633e-03	k: 579	n:560000
SPEG   560000 perm   269 sec   (2078 perm/sec)   p_kst 1.033929e-03   p_cons 4.729643e-02   p_joint 1.148214e-03

Joint ci ratio: 1.530789e-01	ci left: 1.061151e-03	ci right 1.238718e-03	k: 654	n:570000
Cons ci ratio: 2.331440e-02	ci left: 4.670149e-02	ci right 4.780487e-02	k: 26933	n:570000
KS ci ratio: 1.613002e-01	ci left: 9.515944e-04	ci right 1.120210e-03	k: 589	n:570000
SPEG   570000 perm   277 sec   (2059 perm/sec)   p_kst 1.033333e-03   p_cons 4.725088e-02   p_joint 1.147368e-03

Joint ci ratio: 1.530804e-01	ci left: 1.042855e-03	ci right 1.217362e-03	k: 654	n:580000
Cons ci ratio: 2.312296e-02	ci left: 4.666592e-02	ci right 4.775929e-02	k: 27382	n:580000
KS ci ratio: 1.604868e-01	ci left: 9.451157e-04	ci right 1.111657e-03	k: 595	n:580000
SPEG   580000 perm   284 sec   (2044 perm/sec)   p_kst 1.025862e-03   p_cons 4.721034e-02   p_joint 1.127586e-03

Joint ci ratio: 1.513567e-01	ci left: 1.049635e-03	ci right 1.223120e-03	k: 669	n:590000
Cons ci ratio: 2.291887e-02	ci left: 4.669903e-02	ci right 4.778339e-02	k: 27871	n:590000
KS ci ratio: 1.581159e-01	ci left: 9.583896e-04	ci right 1.124538e-03	k: 613	n:590000
SPEG   590000 perm   291 sec   (2030 perm/sec)   p_kst 1.038983e-03   p_cons 4.723898e-02   p_joint 1.133898e-03

Joint ci ratio: 1.574767e-01	ci left: 9.504204e-04	ci right 1.114459e-03	k: 618	n:600000
Cons ci ratio: 2.271506e-02	ci left: 4.675096e-02	ci right 4.782675e-02	k: 28372	n:600000
KS ci ratio: 1.568438e-01	ci left: 9.584263e-04	ci right 1.123119e-03	k: 623	n:600000
SPEG   600000 perm   298 sec   (2016 perm/sec)   p_kst 1.038333e-03   p_cons 4.728667e-02   p_joint 1.030000e-03

Joint ci ratio: 1.594234e-01	ci left: 9.112231e-04	ci right 1.070626e-03	k: 603	n:610000
Cons ci ratio: 2.253010e-02	ci left: 4.674742e-02	ci right 4.781426e-02	k: 28840	n:610000
KS ci ratio: 1.557250e-01	ci left: 9.568915e-04	ci right 1.120038e-03	k: 632	n:610000
SPEG   610000 perm   305 sec   (2002 perm/sec)   p_kst 1.036066e-03   p_cons 4.727869e-02   p_joint 9.885246e-04

Joint ci ratio: 1.577346e-01	ci left: 9.166618e-04	ci right 1.075157e-03	k: 616	n:620000
Cons ci ratio: 2.234239e-02	ci left: 4.677291e-02	ci right 4.783132e-02	k: 29326	n:620000
KS ci ratio: 1.542694e-01	ci left: 9.600620e-04	ci right 1.122078e-03	k: 644	n:620000
SPEG   620000 perm   312 sec   (1988 perm/sec)   p_kst 1.038710e-03   p_cons 4.730000e-02   p_joint 9.935484e-04

Joint ci ratio: 1.563469e-01	ci left: 9.188859e-04	ci right 1.076237e-03	k: 627	n:630000
Cons ci ratio: 2.215656e-02	ci left: 4.680868e-02	ci right 4.785898e-02	k: 29819	n:630000
KS ci ratio: 1.532044e-01	ci left: 9.585590e-04	ci right 1.119102e-03	k: 653	n:630000
SPEG   630000 perm   319 sec   (1974 perm/sec)   p_kst 1.036508e-03   p_cons 4.733175e-02   p_joint 9.952381e-04

Joint ci ratio: 1.553607e-01	ci left: 9.165407e-04	ci right 1.072408e-03	k: 635	n:640000
Cons ci ratio: 2.196655e-02	ci left: 4.687912e-02	ci right 4.792186e-02	k: 30335	n:640000
KS ci ratio: 1.518177e-01	ci left: 9.616161e-04	ci right 1.121081e-03	k: 665	n:640000
SPEG   640000 perm   326 sec   (1961 perm/sec)   p_kst 1.039063e-03   p_cons 4.739844e-02   p_joint 9.921875e-04

Joint ci ratio: 1.547542e-01	ci left: 9.098337e-04	ci right 1.063900e-03	k: 640	n:650000
Cons ci ratio: 2.179915e-02	ci left: 4.687396e-02	ci right 4.790854e-02	k: 30803	n:650000
KS ci ratio: 1.503571e-01	ci left: 9.660661e-04	ci right 1.124589e-03	k: 678	n:650000
SPEG   650000 perm   334 sec   (1945 perm/sec)   p_kst 1.043077e-03   p_cons 4.738923e-02   p_joint 9.846154e-04

Joint ci ratio: 1.539164e-01	ci left: 9.062447e-04	ci right 1.058796e-03	k: 647	n:660000
Cons ci ratio: 2.162971e-02	ci left: 4.689310e-02	ci right 4.791997e-02	k: 31287	n:660000
KS ci ratio: 1.489378e-01	ci left: 9.703884e-04	ci right 1.127983e-03	k: 691	n:660000
SPEG   660000 perm   342 sec   (1932 perm/sec)   p_kst 1.046970e-03   p_cons 4.740455e-02   p_joint 9.803030e-04

Joint ci ratio: 1.533266e-01	ci left: 8.998942e-04	ci right 1.050743e-03	k: 652	n:670000
Cons ci ratio: 2.147517e-02	ci left: 4.686567e-02	ci right 4.788451e-02	k: 31740	n:670000
KS ci ratio: 1.477679e-01	ci left: 9.717135e-04	ci right 1.128175e-03	k: 702	n:670000
SPEG   670000 perm   349 sec   (1918 perm/sec)   p_kst 1.047761e-03   p_cons 4.737313e-02   p_joint 9.731343e-04

Joint ci ratio: 1.523961e-01	ci left: 8.979751e-04	ci right 1.047505e-03	k: 660	n:680000
Cons ci ratio: 2.130895e-02	ci left: 4.690199e-02	ci right 4.791363e-02	k: 32236	n:680000
KS ci ratio: 1.466252e-01	ci left: 9.730043e-04	ci right 1.128355e-03	k: 713	n:680000
SPEG   680000 perm   357 sec   (1905 perm/sec)   p_kst 1.048529e-03   p_cons 4.740588e-02   p_joint 9.705882e-04

Joint ci ratio: 1.515958e-01	ci left: 8.947200e-04	ci right 1.042854e-03	k: 667	n:690000
Cons ci ratio: 2.115570e-02	ci left: 4.689835e-02	ci right 4.790255e-02	k: 32705	n:690000
KS ci ratio: 1.456091e-01	ci left: 9.728657e-04	ci right 1.127025e-03	k: 723	n:690000
SPEG   690000 perm   365 sec   (1892 perm/sec)   p_kst 1.047826e-03   p_cons 4.739855e-02   p_joint 9.666667e-04

Joint ci ratio: 1.578717e-01	ci left: 8.105248e-04	ci right 9.508016e-04	k: 615	n:700000
Cons ci ratio: 2.101003e-02	ci left: 4.687637e-02	ci right 4.787310e-02	k: 33161	n:700000
KS ci ratio: 1.446139e-01	ci left: 9.727347e-04	ci right 1.125728e-03	k: 733	n:700000
SPEG   700000 perm   372 sec   (1879 perm/sec)   p_kst 1.047143e-03   p_cons 4.737286e-02   p_joint 8.785714e-04

Joint ci ratio: 2.240430e-01	ci left: 3.827234e-04	ci right 4.805828e-04	k: 305	n:710000
Cons ci ratio: 2.144413e-02	ci left: 4.446711e-02	ci right 4.543238e-02	k: 31913	n:710000
KS ci ratio: 1.435422e-01	ci left: 9.739687e-04	ci right 1.125924e-03	k: 744	n:710000
SPEG   710000 perm   381 sec   (1864 perm/sec)   p_kst 1.047887e-03   p_cons 4.494789e-02   p_joint 4.295775e-04

Joint ci ratio: 2.218781e-01	ci left: 3.852759e-04	ci right 4.827059e-04	k: 311	n:720000
Cons ci ratio: 2.130486e-02	ci left: 4.442971e-02	ci right 4.538784e-02	k: 32333	n:720000
KS ci ratio: 1.430635e-01	ci left: 9.671365e-04	ci right 1.117480e-03	k: 749	n:720000
SPEG   720000 perm   389 sec   (1853 perm/sec)   p_kst 1.040278e-03   p_cons 4.490694e-02   p_joint 4.319444e-04

Joint ci ratio: 2.270330e-01	ci left: 3.618976e-04	ci right 4.558398e-04	k: 297	n:730000
Cons ci ratio: 2.115542e-02	ci left: 4.444516e-02	ci right 4.539681e-02	k: 32791	n:730000
KS ci ratio: 1.419324e-01	ci left: 9.697405e-04	ci right 1.119196e-03	k: 761	n:730000
SPEG   730000 perm   397 sec   (1841 perm/sec)   p_kst 1.042466e-03   p_cons 4.491918e-02   p_joint 4.068493e-04

Joint ci ratio: 2.240450e-01	ci left: 3.672073e-04	ci right 4.611002e-04	k: 305	n:740000
Cons ci ratio: 2.100809e-02	ci left: 4.446424e-02	ci right 4.540959e-02	k: 33252	n:740000
KS ci ratio: 1.404648e-01	ci left: 9.774940e-04	ci right 1.126456e-03	k: 777	n:740000
SPEG   740000 perm   405 sec   (1829 perm/sec)   p_kst 1.050000e-03   p_cons 4.493514e-02   p_joint 4.121622e-04

Joint ci ratio: 2.236803e-01	ci left: 3.635697e-04	ci right 4.563602e-04	k: 306	n:750000
Cons ci ratio: 2.086509e-02	ci left: 4.447753e-02	ci right 4.541665e-02	k: 33709	n:750000
KS ci ratio: 1.393938e-01	ci left: 9.799007e-04	ci right 1.127996e-03	k: 789	n:750000
SPEG   750000 perm   413 sec   (1817 perm/sec)   p_kst 1.052000e-03   p_cons 4.494533e-02   p_joint 4.080000e-04

Joint ci ratio: 2.218806e-01	ci left: 3.649977e-04	ci right 4.573009e-04	k: 311	n:760000
Cons ci ratio: 2.072815e-02	ci left: 4.447740e-02	ci right 4.541028e-02	k: 34156	n:760000
KS ci ratio: 1.386066e-01	ci left: 9.784375e-04	ci right 1.125408e-03	k: 798	n:760000
SPEG   760000 perm   421 sec   (1805 perm/sec)   p_kst 1.050000e-03   p_cons 4.494211e-02   p_joint 4.092105e-04

Joint ci ratio: 2.208217e-01	ci left: 3.639376e-04	ci right 4.554738e-04	k: 314	n:770000
Cons ci ratio: 2.060073e-02	ci left: 4.444886e-02	ci right 4.537535e-02	k: 34581	n:770000
KS ci ratio: 1.374924e-01	ci left: 9.820306e-04	ci right 1.128258e-03	k: 811	n:770000
SPEG   770000 perm   429 sec   (1794 perm/sec)   p_kst 1.053247e-03   p_cons 4.491039e-02   p_joint 4.077922e-04

Joint ci ratio: 2.266559e-01	ci left: 3.399078e-04	ci right 4.279747e-04	k: 298	n:780000
Cons ci ratio: 2.047165e-02	ci left: 4.443766e-02	ci right 4.535804e-02	k: 35019	n:780000
KS ci ratio: 1.369876e-01	ci left: 9.768685e-04	ci right 1.121750e-03	k: 817	n:780000
SPEG   780000 perm   438 sec   (1782 perm/sec)   p_kst 1.047436e-03   p_cons 4.489615e-02   p_joint 3.820513e-04

Joint ci ratio: 2.259019e-01	ci left: 3.379933e-04	ci right 4.252323e-04	k: 300	n:790000
Cons ci ratio: 2.034376e-02	ci left: 4.443179e-02	ci right 4.534623e-02	k: 35461	n:790000
KS ci ratio: 1.364055e-01	ci left: 9.730607e-04	ci right 1.116714e-03	k: 824	n:790000
SPEG   790000 perm   446 sec   (1770 perm/sec)   p_kst 1.043038e-03   p_cons 4.488734e-02   p_joint 3.797468e-04

Joint ci ratio: 2.247846e-01	ci left: 3.373067e-04	ci right 4.238782e-04	k: 303	n:800000
Cons ci ratio: 2.021972e-02	ci left: 4.441987e-02	ci right 4.532843e-02	k: 35898	n:800000
KS ci ratio: 1.356676e-01	ci left: 9.717645e-04	ci right 1.114388e-03	k: 833	n:800000
SPEG   800000 perm   455 sec   (1758 perm/sec)   p_kst 1.041250e-03   p_cons 4.487250e-02   p_joint 3.787500e-04

Joint ci ratio: 2.236837e-01	ci left: 3.366381e-04	ci right 4.225565e-04	k: 306	n:810000
Cons ci ratio: 2.008952e-02	ci left: 4.444389e-02	ci right 4.534702e-02	k: 36364	n:810000
KS ci ratio: 1.350218e-01	ci left: 9.693094e-04	ci right 1.110841e-03	k: 841	n:810000
SPEG   810000 perm   464 sec   (1747 perm/sec)   p_kst 1.038272e-03   p_cons 4.489383e-02   p_joint 3.777778e-04

Joint ci ratio: 2.274201e-01	ci left: 3.210262e-04	ci right 4.045209e-04	k: 296	n:820000
Cons ci ratio: 1.996266e-02	ci left: 4.446370e-02	ci right 4.536147e-02	k: 36827	n:820000
KS ci ratio: 1.337565e-01	ci left: 9.763450e-04	ci right 1.117462e-03	k: 857	n:820000
SPEG   820000 perm   472 sec   (1736 perm/sec)   p_kst 1.045122e-03   p_cons 4.491098e-02   p_joint 3.609756e-04

Joint ci ratio: 2.251569e-01	ci left: 3.239777e-04	ci right 4.072851e-04	k: 302	n:830000
Cons ci ratio: 1.985155e-02	ci left: 4.442550e-02	ci right 4.531744e-02	k: 37242	n:830000
KS ci ratio: 1.329838e-01	ci left: 9.762280e-04	ci right 1.116448e-03	k: 867	n:830000
SPEG   830000 perm   481 sec   (1725 perm/sec)   p_kst 1.044578e-03   p_cons 4.486988e-02   p_joint 3.638554e-04

Joint ci ratio: 2.236852e-01	ci left: 3.246150e-04	ci right 4.074656e-04	k: 306	n:840000
Cons ci ratio: 1.972118e-02	ci left: 4.447945e-02	ci right 4.536655e-02	k: 37734	n:840000
KS ci ratio: 1.321490e-01	ci left: 9.772672e-04	ci right 1.116686e-03	k: 878	n:840000
SPEG   840000 perm   490 sec   (1713 perm/sec)   p_kst 1.045238e-03   p_cons 4.492143e-02   p_joint 3.642857e-04

Joint ci ratio: 2.222420e-01	ci left: 3.252391e-04	ci right 4.076401e-04	k: 310	n:850000
Cons ci ratio: 1.960140e-02	ci left: 4.449703e-02	ci right 4.537902e-02	k: 38196	n:850000
KS ci ratio: 1.312560e-01	ci left: 9.794226e-04	ci right 1.118131e-03	k: 890	n:850000
SPEG   850000 perm   499 sec   (1703 perm/sec)   p_kst 1.047059e-03   p_cons 4.493647e-02   p_joint 3.647059e-04

Joint ci ratio: 2.201284e-01	ci left: 3.280476e-04	ci right 4.102627e-04	k: 316	n:860000
Cons ci ratio: 1.948298e-02	ci left: 4.451768e-02	ci right 4.539469e-02	k: 38661	n:860000
KS ci ratio: 1.306709e-01	ci left: 9.770314e-04	ci right 1.114737e-03	k: 898	n:860000
SPEG   860000 perm   508 sec   (1693 perm/sec)   p_kst 1.044186e-03   p_cons 4.495465e-02   p_joint 3.674419e-04

Joint ci ratio: 2.177371e-01	ci left: 3.318818e-04	ci right 4.140334e-04	k: 323	n:870000
Cons ci ratio: 1.936617e-02	ci left: 4.454016e-02	ci right 4.541230e-02	k: 39128	n:870000
KS ci ratio: 1.300935e-01	ci left: 9.746966e-04	ci right 1.111419e-03	k: 906	n:870000
SPEG   870000 perm   517 sec   (1683 perm/sec)   p_kst 1.041379e-03   p_cons 4.497471e-02   p_joint 3.712644e-04

Joint ci ratio: 2.164053e-01	ci left: 3.324088e-04	ci right 4.141206e-04	k: 327	n:880000
Cons ci ratio: 1.925830e-02	ci left: 4.453161e-02	ci right 4.539866e-02	k: 39568	n:880000
KS ci ratio: 1.290306e-01	ci left: 9.801136e-04	ci right 1.116387e-03	k: 921	n:880000
SPEG   880000 perm   526 sec   (1674 perm/sec)   p_kst 1.046591e-03   p_cons 4.496364e-02   p_joint 3.715909e-04

Joint ci ratio: 2.150977e-01	ci left: 3.329254e-04	ci right 4.142045e-04	k: 331	n:890000
Cons ci ratio: 1.914671e-02	ci left: 4.454786e-02	ci right 4.541016e-02	k: 40030	n:890000
KS ci ratio: 1.281989e-01	ci left: 9.821505e-04	ci right 1.117760e-03	k: 933	n:890000
SPEG   890000 perm   535 sec   (1664 perm/sec)   p_kst 1.048315e-03   p_cons 4.497753e-02   p_joint 3.719101e-04

Joint ci ratio: 2.138135e-01	ci left: 3.334320e-04	ci right 4.142850e-04	k: 335	n:900000
Cons ci ratio: 1.903581e-02	ci left: 4.456930e-02	ci right 4.542696e-02	k: 40497	n:900000
KS ci ratio: 1.279258e-01	ci left: 9.755396e-04	ci right 1.109927e-03	k: 937	n:900000
SPEG   900000 perm   544 sec   (1655 perm/sec)   p_kst 1.041111e-03   p_cons 4.499667e-02   p_joint 3.722222e-04

Joint ci ratio: 2.222447e-01	ci left: 3.037944e-04	ci right 3.807633e-04	k: 310	n:910000
Cons ci ratio: 1.892995e-02	ci left: 4.457607e-02	ci right 4.542903e-02	k: 40951	n:910000
KS ci ratio: 1.273839e-01	ci left: 9.733298e-04	ci right 1.106802e-03	k: 945	n:910000
SPEG   910000 perm   553 sec   (1645 perm/sec)   p_kst 1.038462e-03   p_cons 4.500110e-02   p_joint 3.406593e-04

Joint ci ratio: 2.211805e-01	ci left: 3.035721e-04	ci right 3.800662e-04	k: 313	n:920000
Cons ci ratio: 1.882846e-02	ci left: 4.457079e-02	ci right 4.541903e-02	k: 41394	n:920000
KS ci ratio: 1.264514e-01	ci left: 9.774845e-04	ci right 1.110472e-03	k: 959	n:920000
SPEG   920000 perm   562 sec   (1636 perm/sec)   p_kst 1.042391e-03   p_cons 4.499348e-02   p_joint 3.402174e-04

Joint ci ratio: 2.240545e-01	ci left: 2.921851e-04	ci right 3.668987e-04	k: 305	n:930000
Cons ci ratio: 1.872016e-02	ci left: 4.460418e-02	ci right 4.544812e-02	k: 41873	n:930000
KS ci ratio: 1.258629e-01	ci left: 9.763459e-04	ci right 1.108514e-03	k: 968	n:930000
SPEG   930000 perm   572 sec   (1627 perm/sec)   p_kst 1.040860e-03   p_cons 4.502473e-02   p_joint 3.279570e-04

Joint ci ratio: 2.215345e-01	ci left: 2.961081e-04	ci right 3.708572e-04	k: 312	n:940000
Cons ci ratio: 1.862153e-02	ci left: 4.460086e-02	ci right 4.544025e-02	k: 42318	n:940000
KS ci ratio: 1.253467e-01	ci left: 9.742024e-04	ci right 1.105499e-03	k: 976	n:940000
SPEG   940000 perm   581 sec   (1617 perm/sec)   p_kst 1.038298e-03   p_cons 4.501915e-02   p_joint 3.319149e-04

Joint ci ratio: 2.215349e-01	ci left: 2.929911e-04	ci right 3.669535e-04	k: 312	n:950000
Cons ci ratio: 1.852829e-02	ci left: 4.457981e-02	ci right 4.541455e-02	k: 42746	n:950000
KS ci ratio: 1.248368e-01	ci left: 9.721051e-04	ci right 1.102547e-03	k: 984	n:950000
SPEG   950000 perm   591 sec   (1608 perm/sec)   p_kst 1.035789e-03   p_cons 4.499579e-02   p_joint 3.284211e-04

Joint ci ratio: 2.201327e-01	ci left: 2.938754e-04	ci right 3.675278e-04	k: 316	n:960000
Cons ci ratio: 1.843377e-02	ci left: 4.457165e-02	ci right 4.540194e-02	k: 43186	n:960000
KS ci ratio: 1.241454e-01	ci left: 9.730805e-04	ci right 1.102877e-03	k: 995	n:960000
SPEG   960000 perm   601 sec   (1599 perm/sec)   p_kst 1.036458e-03   p_cons 4.498542e-02   p_joint 3.291667e-04

Joint ci ratio: 2.197865e-01	ci left: 2.918198e-04	ci right 3.648265e-04	k: 317	n:970000
Cons ci ratio: 1.833473e-02	ci left: 4.459138e-02	ci right 4.541753e-02	k: 43653	n:970000
KS ci ratio: 1.235884e-01	ci left: 9.720396e-04	ci right 1.101073e-03	k: 1004	n:970000
SPEG   970000 perm   610 sec   (1590 perm/sec)   p_kst 1.035052e-03   p_cons 4.500309e-02   p_joint 3.268041e-04

Joint ci ratio: 2.194420e-01	ci left: 2.898063e-04	ci right 3.621803e-04	k: 318	n:980000
Cons ci ratio: 1.823425e-02	ci left: 4.462494e-02	ci right 4.544714e-02	k: 44134	n:980000
KS ci ratio: 1.231604e-01	ci left: 9.690432e-04	ci right 1.097201e-03	k: 1011	n:980000
SPEG   980000 perm   620 sec   (1581 perm/sec)   p_kst 1.031633e-03   p_cons 4.503469e-02   p_joint 3.244898e-04

Joint ci ratio: 2.259106e-01	ci left: 2.697107e-04	ci right 3.393283e-04	k: 300	n:990000
Cons ci ratio: 1.814605e-02	ci left: 4.460756e-02	ci right 4.542541e-02	k: 44565	n:990000
KS ci ratio: 1.225564e-01	ci left: 9.690454e-04	ci right 1.096529e-03	k: 1021	n:990000
SPEG   990000 perm   630 sec   (1572 perm/sec)   p_kst 1.031313e-03   p_cons 4.501515e-02   p_joint 3.030303e-04

Joint ci ratio: 2.247931e-01	ci left: 2.698443e-04	ci right 3.391041e-04	k: 303	n:1000000
Cons ci ratio: 1.805617e-02	ci left: 4.460447e-02	ci right 4.541817e-02	k: 45010	n:1000000
KS ci ratio: 1.220797e-01	ci left: 9.671101e-04	ci right 1.093809e-03	k: 1029	n:1000000
SPEG   1000000 perm   640 sec   (1563 perm/sec)   p_kst 1.029000e-03   p_cons 4.501000e-02   p_joint 3.030000e-04

Joint ci ratio: 2.244245e-01	ci left: 2.681069e-04	ci right 3.367924e-04	k: 304	n:1010000
Cons ci ratio: 1.795914e-02	ci left: 4.464187e-02	ci right 4.545183e-02	k: 45496	n:1010000
KS ci ratio: 1.216672e-01	ci left: 9.642541e-04	ci right 1.090121e-03	k: 1036	n:1010000
SPEG   1010000 perm   650 sec   (1554 perm/sec)   p_kst 1.025743e-03   p_cons 4.504554e-02   p_joint 3.009901e-04

Joint ci ratio: 2.222488e-01	ci left: 2.710317e-04	ci right 3.397013e-04	k: 310	n:1020000
Cons ci ratio: 1.787200e-02	ci left: 4.463852e-02	ci right 4.544446e-02	k: 45941	n:1020000
KS ci ratio: 1.210269e-01	ci left: 9.652576e-04	ci right 1.090545e-03	k: 1047	n:1020000
SPEG   1020000 perm   660 sec   (1545 perm/sec)   p_kst 1.026471e-03   p_cons 4.504020e-02   p_joint 3.039216e-04

Joint ci ratio: 2.281984e-01	ci left: 2.537423e-04	ci right 3.199949e-04	k: 294	n:1030000
Cons ci ratio: 1.778532e-02	ci left: 4.463912e-02	ci right 4.544111e-02	k: 46390	n:1030000
KS ci ratio: 1.203967e-01	ci left: 9.662434e-04	ci right 1.090959e-03	k: 1058	n:1030000
SPEG   1030000 perm   670 sec   (1537 perm/sec)   p_kst 1.027184e-03   p_cons 4.503883e-02   p_joint 2.854369e-04

Joint ci ratio: 2.262886e-01	ci left: 2.558365e-04	ci right 3.219988e-04	k: 299	n:1040000
Cons ci ratio: 1.770028e-02	ci left: 4.463780e-02	ci right 4.543590e-02	k: 46837	n:1040000
KS ci ratio: 1.198322e-01	ci left: 9.662790e-04	ci right 1.090373e-03	k: 1068	n:1040000
SPEG   1040000 perm   681 sec   (1528 perm/sec)   p_kst 1.026923e-03   p_cons 4.503558e-02   p_joint 2.875000e-04

Joint ci ratio: 2.247948e-01	ci left: 2.569943e-04	ci right 3.229566e-04	k: 303	n:1050000
Cons ci ratio: 1.761820e-02	ci left: 4.462797e-02	ci right 4.542216e-02	k: 47275	n:1050000
KS ci ratio: 1.191100e-01	ci left: 9.690874e-04	ci right 1.092739e-03	k: 1081	n:1050000
SPEG   1050000 perm   691 sec   (1519 perm/sec)   p_kst 1.029524e-03   p_cons 4.502381e-02   p_joint 2.885714e-04

Joint ci ratio: 2.233302e-01	ci left: 2.581317e-04	ci right 3.238948e-04	k: 307	n:1060000
Cons ci ratio: 1.753687e-02	ci left: 4.462022e-02	ci right 4.541057e-02	k: 47715	n:1060000
KS ci ratio: 1.185091e-01	ci left: 9.700141e-04	ci right 1.093116e-03	k: 1092	n:1060000
SPEG   1060000 perm   702 sec   (1511 perm/sec)   p_kst 1.030189e-03   p_cons 4.501415e-02   p_joint 2.896226e-04

Joint ci ratio: 2.222504e-01	ci left: 2.583665e-04	ci right 3.238277e-04	k: 310	n:1070000
Cons ci ratio: 1.745116e-02	ci left: 4.463961e-02	ci right 4.542640e-02	k: 48184	n:1070000
KS ci ratio: 1.179707e-01	ci left: 9.700179e-04	ci right 1.092522e-03	k: 1102	n:1070000
SPEG   1070000 perm   712 sec   (1502 perm/sec)   p_kst 1.029907e-03   p_cons 4.503178e-02   p_joint 2.897196e-04

Joint ci ratio: 2.208347e-01	ci left: 2.594724e-04	ci right 3.247381e-04	k: 314	n:1080000
Cons ci ratio: 1.736781e-02	ci left: 4.465313e-02	ci right 4.543635e-02	k: 48647	n:1080000
KS ci ratio: 1.171764e-01	ci left: 9.745168e-04	ci right 1.096703e-03	k: 1117	n:1080000
SPEG   1080000 perm   723 sec   (1494 perm/sec)   p_kst 1.034259e-03   p_cons 4.504352e-02   p_joint 2.907407e-04

Joint ci ratio: 2.201370e-01	ci left: 2.588255e-04	ci right 3.236949e-04	k: 316	n:1090000
Cons ci ratio: 1.729338e-02	ci left: 4.462802e-02	ci right 4.540742e-02	k: 49068	n:1090000
KS ci ratio: 1.165009e-01	ci left: 9.771544e-04	ci right 1.098916e-03	k: 1130	n:1090000
SPEG   1090000 perm   734 sec   (1485 perm/sec)   p_kst 1.036697e-03   p_cons 4.501651e-02   p_joint 2.899083e-04

Joint ci ratio: 2.204855e-01	ci left: 2.556136e-04	ci right 3.197932e-04	k: 315	n:1100000
Cons ci ratio: 1.722064e-02	ci left: 4.459976e-02	ci right 4.537536e-02	k: 49485	n:1100000
KS ci ratio: 1.161422e-01	ci left: 9.744496e-04	ci right 1.095475e-03	k: 1137	n:1100000
SPEG   1100000 perm   745 sec   (1477 perm/sec)   p_kst 1.033636e-03   p_cons 4.498636e-02   p_joint 2.863636e-04

Joint ci ratio: 2.197911e-01	ci left: 2.550132e-04	ci right 3.188131e-04	k: 317	n:1110000
Cons ci ratio: 1.714791e-02	ci left: 4.457651e-02	ci right 4.534839e-02	k: 49907	n:1110000
KS ci ratio: 1.155849e-01	ci left: 9.752935e-04	ci right 1.095803e-03	k: 1148	n:1110000
SPEG   1110000 perm   756 sec   (1469 perm/sec)   p_kst 1.034234e-03   p_cons 4.496126e-02   p_joint 2.855856e-04

Joint ci ratio: 2.187616e-01	ci left: 2.552677e-04	ci right 3.187920e-04	k: 320	n:1120000
Cons ci ratio: 1.706296e-02	ci left: 4.461947e-02	ci right 4.538824e-02	k: 50403	n:1120000
KS ci ratio: 1.150852e-01	ci left: 9.752565e-04	ci right 1.095205e-03	k: 1158	n:1120000
SPEG   1120000 perm   767 sec   (1461 perm/sec)   p_kst 1.033929e-03   p_cons 4.500268e-02   p_joint 2.857143e-04

Joint ci ratio: 2.180834e-01	ci left: 2.546818e-04	ci right 3.178375e-04	k: 322	n:1130000
Cons ci ratio: 1.698869e-02	ci left: 4.461409e-02	ci right 4.537939e-02	k: 50845	n:1130000
KS ci ratio: 1.147394e-01	ci left: 9.726425e-04	ci right 1.091886e-03	k: 1165	n:1130000
SPEG   1130000 perm   778 sec   (1453 perm/sec)   p_kst 1.030973e-03   p_cons 4.499558e-02   p_joint 2.849558e-04

Joint ci ratio: 2.184221e-01	ci left: 2.516185e-04	ci right 3.141244e-04	k: 321	n:1140000
Cons ci ratio: 1.691902e-02	ci left: 4.459047e-02	ci right 4.535219e-02	k: 51266	n:1140000
KS ci ratio: 1.145434e-01	ci left: 9.675186e-04	ci right 1.085917e-03	k: 1169	n:1140000
SPEG   1140000 perm   789 sec   (1446 perm/sec)   p_kst 1.025439e-03   p_cons 4.497018e-02   p_joint 2.815789e-04

Joint ci ratio: 2.174117e-01	ci left: 2.518968e-04	ci right 3.141437e-04	k: 324	n:1150000
Cons ci ratio: 1.684593e-02	ci left: 4.458892e-02	ci right 4.534729e-02	k: 51712	n:1150000
KS ci ratio: 1.141054e-01	ci left: 9.667076e-04	ci right 1.084524e-03	k: 1178	n:1150000
SPEG   1150000 perm   800 sec   (1438 perm/sec)   p_kst 1.024348e-03   p_cons 4.496696e-02   p_joint 2.817391e-04

Joint ci ratio: 2.157581e-01	ci left: 2.538019e-04	ci right 3.159794e-04	k: 329	n:1160000
Cons ci ratio: 1.676688e-02	ci left: 4.462260e-02	ci right 4.537795e-02	k: 52199	n:1160000
KS ci ratio: 1.136724e-01	ci left: 9.659115e-04	ci right 1.083155e-03	k: 1187	n:1160000
SPEG   1160000 perm   811 sec   (1430 perm/sec)   p_kst 1.023276e-03   p_cons 4.499914e-02   p_joint 2.836207e-04

Joint ci ratio: 2.144621e-01	ci left: 2.548673e-04	ci right 3.168814e-04	k: 333	n:1170000
Cons ci ratio: 1.669557e-02	ci left: 4.462166e-02	ci right 4.537376e-02	k: 52646	n:1170000
KS ci ratio: 1.131498e-01	ci left: 9.667909e-04	ci right 1.083565e-03	k: 1198	n:1170000
SPEG   1170000 perm   822 sec   (1423 perm/sec)   p_kst 1.023932e-03   p_cons 4.499658e-02   p_joint 2.846154e-04

Joint ci ratio: 2.197930e-01	ci left: 2.398851e-04	ci right 2.999008e-04	k: 317	n:1180000
Cons ci ratio: 1.661665e-02	ci left: 4.466464e-02	ci right 4.541387e-02	k: 53145	n:1180000
KS ci ratio: 1.124483e-01	ci left: 9.709511e-04	ci right 1.087453e-03	k: 1213	n:1180000
SPEG   1180000 perm   834 sec   (1415 perm/sec)   p_kst 1.027966e-03   p_cons 4.503814e-02   p_joint 2.686441e-04

Joint ci ratio: 2.184234e-01	ci left: 2.410461e-04	ci right 3.009261e-04	k: 321	n:1190000
Cons ci ratio: 1.655192e-02	ci left: 4.463911e-02	ci right 4.538496e-02	k: 53563	n:1190000
KS ci ratio: 1.118509e-01	ci left: 9.734099e-04	ci right 1.089545e-03	k: 1226	n:1190000
SPEG   1190000 perm   845 sec   (1408 perm/sec)   p_kst 1.030252e-03   p_cons 4.501092e-02   p_joint 2.697479e-04

Joint ci ratio: 2.177483e-01	ci left: 2.406130e-04	ci right 3.001760e-04	k: 323	n:1200000
Cons ci ratio: 1.648619e-02	ci left: 4.462313e-02	ci right 4.536573e-02	k: 53992	n:1200000
KS ci ratio: 1.115334e-01	ci left: 9.709684e-04	ci right 1.086462e-03	k: 1233	n:1200000
SPEG   1200000 perm   857 sec   (1401 perm/sec)   p_kst 1.027500e-03   p_cons 4.499333e-02   p_joint 2.691667e-04

Joint ci ratio: 2.218976e-01	ci left: 2.292530e-04	ci right 2.872329e-04	k: 311	n:1210000
Cons ci ratio: 1.641681e-02	ci left: 4.463048e-02	ci right 4.537005e-02	k: 54449	n:1210000
KS ci ratio: 1.110395e-01	ci left: 9.717818e-04	ci right 1.086826e-03	k: 1244	n:1210000
SPEG   1210000 perm   869 sec   (1393 perm/sec)   p_kst 1.028099e-03   p_cons 4.499917e-02   p_joint 2.570248e-04

Joint ci ratio: 2.211898e-01	ci left: 2.289222e-04	ci right 2.866087e-04	k: 313	n:1220000
Cons ci ratio: 1.634159e-02	ci left: 4.467282e-02	ci right 4.540967e-02	k: 54949	n:1220000
KS ci ratio: 1.106846e-01	ci left: 9.701918e-04	ci right 1.084657e-03	k: 1252	n:1220000
SPEG   1220000 perm   880 sec   (1386 perm/sec)   p_kst 1.026230e-03   p_cons 4.504016e-02   p_joint 2.565574e-04

Joint ci ratio: 2.204888e-01	ci left: 2.285971e-04	ci right 2.859944e-04	k: 315	n:1230000
Cons ci ratio: 1.627832e-02	ci left: 4.465698e-02	ci right 4.539069e-02	k: 55378	n:1230000
KS ci ratio: 1.104207e-01	ci left: 9.670472e-04	ci right 1.080852e-03	k: 1258	n:1230000
SPEG   1230000 perm   893 sec   (1377 perm/sec)   p_kst 1.022764e-03   p_cons 4.502276e-02   p_joint 2.560976e-04

Joint ci ratio: 2.244309e-01	ci left: 2.183767e-04	ci right 2.743237e-04	k: 304	n:1240000
Cons ci ratio: 1.621152e-02	ci left: 4.466390e-02	ci right 4.539468e-02	k: 55835	n:1240000
KS ci ratio: 1.098982e-01	ci left: 9.686592e-04	ci right 1.082079e-03	k: 1270	n:1240000
SPEG   1240000 perm   905 sec   (1370 perm/sec)   p_kst 1.024194e-03   p_cons 4.502823e-02   p_joint 2.451613e-04

Joint ci ratio: 2.233351e-01	ci left: 2.188952e-04	ci right 2.746635e-04	k: 307	n:1250000
Cons ci ratio: 1.614359e-02	ci left: 4.468107e-02	ci right 4.540904e-02	k: 56305	n:1250000
KS ci ratio: 1.094684e-01	ci left: 9.686905e-04	ci right 1.081642e-03	k: 1280	n:1250000
SPEG   1250000 perm   917 sec   (1364 perm/sec)   p_kst 1.024000e-03   p_cons 4.504400e-02   p_joint 2.456000e-04

Joint ci ratio: 2.226136e-01	ci left: 2.186565e-04	ci right 2.741594e-04	k: 309	n:1260000
Cons ci ratio: 1.608125e-02	ci left: 4.467268e-02	ci right 4.539767e-02	k: 56743	n:1260000
KS ci ratio: 1.092131e-01	ci left: 9.656341e-04	ci right 1.077950e-03	k: 1286	n:1260000
SPEG   1260000 perm   929 sec   (1357 perm/sec)   p_kst 1.020635e-03   p_cons 4.503413e-02   p_joint 2.452381e-04

Joint ci ratio: 2.215441e-01	ci left: 2.191657e-04	ci right 2.744941e-04	k: 312	n:1270000
Cons ci ratio: 1.601962e-02	ci left: 4.466442e-02	ci right 4.538648e-02	k: 57181	n:1270000
KS ci ratio: 1.087493e-01	ci left: 9.664560e-04	ci right 1.078359e-03	k: 1297	n:1270000
SPEG   1270000 perm   940 sec   (1350 perm/sec)   p_kst 1.021260e-03   p_cons 4.502441e-02   p_joint 2.456693e-04

Joint ci ratio: 2.208397e-01	ci left: 2.189294e-04	ci right 2.739985e-04	k: 314	n:1280000
Cons ci ratio: 1.595232e-02	ci left: 4.469054e-02	ci right 4.540996e-02	k: 57663	n:1280000
KS ci ratio: 1.083743e-01	ci left: 9.657459e-04	ci right 1.077157e-03	k: 1306	n:1280000
SPEG   1280000 perm   952 sec   (1344 perm/sec)   p_kst 1.020312e-03   p_cons 4.504922e-02   p_joint 2.453125e-04

Joint ci ratio: 2.194506e-01	ci left: 2.201620e-04	ci right 2.751460e-04	k: 318	n:1290000
Cons ci ratio: 1.589130e-02	ci left: 4.468692e-02	ci right 4.540350e-02	k: 58107	n:1290000
KS ci ratio: 1.081266e-01	ci left: 9.627846e-04	ci right 1.073584e-03	k: 1312	n:1290000
SPEG   1290000 perm   964 sec   (1338 perm/sec)   p_kst 1.017054e-03   p_cons 4.504419e-02   p_joint 2.465116e-04

Joint ci ratio: 2.187660e-01	ci left: 2.199225e-04	ci right 2.746522e-04	k: 320	n:1300000
Cons ci ratio: 1.583126e-02	ci left: 4.468182e-02	ci right 4.539559e-02	k: 58549	n:1300000
KS ci ratio: 1.078805e-01	ci left: 9.598692e-04	ci right 1.070066e-03	k: 1318	n:1300000
SPEG   1300000 perm   977 sec   (1331 perm/sec)   p_kst 1.013846e-03   p_cons 4.503769e-02   p_joint 2.461538e-04

Joint ci ratio: 2.170816e-01	ci left: 2.218522e-04	ci right 2.765804e-04	k: 325	n:1310000
Cons ci ratio: 1.577147e-02	ci left: 4.467909e-02	ci right 4.539010e-02	k: 58994	n:1310000
KS ci ratio: 1.073527e-01	ci left: 9.621986e-04	ci right 1.072088e-03	k: 1331	n:1310000
SPEG   1310000 perm   989 sec   (1325 perm/sec)   p_kst 1.016031e-03   p_cons 4.503359e-02   p_joint 2.480916e-04

Joint ci ratio: 2.167496e-01	ci left: 2.208879e-04	ci right 2.752838e-04	k: 326	n:1320000
Cons ci ratio: 1.571582e-02	ci left: 4.465754e-02	ci right 4.536567e-02	k: 59414	n:1320000
KS ci ratio: 1.070318e-01	ci left: 9.608073e-04	ci right 1.070189e-03	k: 1339	n:1320000
SPEG   1320000 perm   1001 sec   (1319 perm/sec)   p_kst 1.014394e-03   p_cons 4.501061e-02   p_joint 2.469697e-04

Joint ci ratio: 2.164190e-01	ci left: 2.199382e-04	ci right 2.740066e-04	k: 327	n:1330000
Cons ci ratio: 1.566596e-02	ci left: 4.460785e-02	ci right 4.531293e-02	k: 59796	n:1330000
KS ci ratio: 1.068329e-01	ci left: 9.572419e-04	ci right 1.066002e-03	k: 1344	n:1330000
SPEG   1330000 perm   1013 sec   (1313 perm/sec)   p_kst 1.010526e-03   p_cons 4.495940e-02   p_joint 2.458647e-04

Joint ci ratio: 1.613483e-01	ci left: 4.047734e-04	ci right 4.765190e-04	k: 589	n:1340000
Cons ci ratio: 1.434613e-02	ci left: 5.239889e-02	ci right 5.315677e-02	k: 70721	n:1340000
KS ci ratio: 1.064380e-01	ci left: 9.573620e-04	ci right 1.065709e-03	k: 1354	n:1340000
SPEG   1340000 perm   1026 sec   (1306 perm/sec)   p_kst 1.010448e-03   p_cons 5.277687e-02   p_joint 4.395522e-04

Joint ci ratio: 1.610756e-01	ci left: 4.031968e-04	ci right 4.745305e-04	k: 591	n:1350000
Cons ci ratio: 1.429255e-02	ci left: 5.240268e-02	ci right 5.315776e-02	k: 71252	n:1350000
KS ci ratio: 1.062815e-01	ci left: 9.531545e-04	ci right 1.060857e-03	k: 1358	n:1350000
SPEG   1350000 perm   1038 sec   (1300 perm/sec)   p_kst 1.005926e-03   p_cons 5.277926e-02   p_joint 4.377778e-04

Joint ci ratio: 1.638689e-01	ci left: 3.861238e-04	ci right 4.557384e-04	k: 571	n:1360000
Cons ci ratio: 1.424135e-02	ci left: 5.239395e-02	ci right 5.314619e-02	k: 71766	n:1360000
KS ci ratio: 1.055842e-01	ci left: 9.590308e-04	ci right 1.066642e-03	k: 1376	n:1360000
SPEG   1360000 perm   1051 sec   (1294 perm/sec)   p_kst 1.011765e-03   p_cons 5.276912e-02   p_joint 4.198529e-04

Joint ci ratio: 1.361882e-01	ci left: 5.632150e-04	ci right 6.462191e-04	k: 827	n:1370000
Cons ci ratio: 1.418521e-02	ci left: 5.242392e-02	ci right 5.317359e-02	k: 72333	n:1370000
KS ci ratio: 1.050136e-01	ci left: 9.626912e-04	ci right 1.070093e-03	k: 1391	n:1370000
SPEG   1370000 perm   1063 sec   (1288 perm/sec)   p_kst 1.015328e-03   p_cons 5.279781e-02   p_joint 6.036496e-04

Joint ci ratio: 1.359423e-01	ci left: 5.612336e-04	ci right 6.437843e-04	k: 830	n:1380000
Cons ci ratio: 1.413403e-02	ci left: 5.242312e-02	ci right 5.317006e-02	k: 72858	n:1380000
KS ci ratio: 1.048257e-01	ci left: 9.592432e-04	ci right 1.066057e-03	k: 1396	n:1380000
SPEG   1380000 perm   1076 sec   (1282 perm/sec)   p_kst 1.011594e-03   p_cons 5.279565e-02   p_joint 6.014493e-04

Joint ci ratio: 1.356977e-01	ci left: 5.592808e-04	ci right 6.413844e-04	k: 833	n:1390000
Cons ci ratio: 1.408208e-02	ci left: 5.243167e-02	ci right 5.317595e-02	k: 73396	n:1390000
KS ci ratio: 1.045642e-01	ci left: 9.572462e-04	ci right 1.063556e-03	k: 1403	n:1390000
SPEG   1390000 perm   1089 sec   (1276 perm/sec)   p_kst 1.009353e-03   p_cons 5.280288e-02   p_joint 5.992806e-04

Joint ci ratio: 1.351318e-01	ci left: 5.601166e-04	ci right 6.419723e-04	k: 840	n:1400000
Cons ci ratio: 1.402759e-02	ci left: 5.246216e-02	ci right 5.320398e-02	k: 73965	n:1400000
KS ci ratio: 1.042307e-01	ci left: 9.566694e-04	ci right 1.062555e-03	k: 1412	n:1400000
SPEG   1400000 perm   1102 sec   (1271 perm/sec)   p_kst 1.008571e-03   p_cons 5.283214e-02   p_joint 6.000000e-04

Joint ci ratio: 1.344935e-01	ci left: 5.616266e-04	ci right 6.432843e-04	k: 848	n:1410000
Cons ci ratio: 1.397413e-02	ci left: 5.248940e-02	ci right 5.322875e-02	k: 74530	n:1410000
KS ci ratio: 1.038273e-01	ci left: 9.574830e-04	ci right 1.063024e-03	k: 1423	n:1410000
SPEG   1410000 perm   1115 sec   (1265 perm/sec)   p_kst 1.009220e-03   p_cons 5.285816e-02   p_joint 6.014184e-04

Joint ci ratio: 1.357801e-01	ci left: 5.467845e-04	ci right 6.271062e-04	k: 832	n:1420000
Cons ci ratio: 1.391990e-02	ci left: 5.252609e-02	ci right 5.326306e-02	k: 75109	n:1420000
KS ci ratio: 1.033205e-01	ci left: 9.603440e-04	ci right 1.065652e-03	k: 1437	n:1420000
SPEG   1420000 perm   1128 sec   (1259 perm/sec)   p_kst 1.011972e-03   p_cons 5.289366e-02   p_joint 5.859155e-04

Joint ci ratio: 1.357803e-01	ci left: 5.429607e-04	ci right 6.227209e-04	k: 832	n:1430000
Cons ci ratio: 1.387318e-02	ci left: 5.251278e-02	ci right 5.324707e-02	k: 75617	n:1430000
KS ci ratio: 1.031415e-01	ci left: 9.570345e-04	ci right 1.061787e-03	k: 1442	n:1430000
SPEG   1430000 perm   1141 sec   (1253 perm/sec)   p_kst 1.008392e-03   p_cons 5.287902e-02   p_joint 5.818182e-04

Joint ci ratio: 1.354556e-01	ci left: 5.418737e-04	ci right 6.212684e-04	k: 836	n:1440000
Cons ci ratio: 1.382692e-02	ci left: 5.249966e-02	ci right 5.323130e-02	k: 76125	n:1440000
KS ci ratio: 1.028214e-01	ci left: 9.564774e-04	ci right 1.060824e-03	k: 1451	n:1440000
SPEG   1440000 perm   1154 sec   (1248 perm/sec)   p_kst 1.007639e-03   p_cons 5.286458e-02   p_joint 5.805556e-04

Joint ci ratio: 1.354559e-01	ci left: 5.381366e-04	ci right 6.169839e-04	k: 836	n:1450000
Cons ci ratio: 1.378111e-02	ci left: 5.248673e-02	ci right 5.321575e-02	k: 76633	n:1450000
KS ci ratio: 1.023291e-01	ci left: 9.592886e-04	ci right 1.063411e-03	k: 1465	n:1450000
SPEG   1450000 perm   1167 sec   (1242 perm/sec)   p_kst 1.010345e-03   p_cons 5.285034e-02   p_joint 5.765517e-04

Joint ci ratio: 1.348130e-01	ci left: 5.397449e-04	ci right 6.184225e-04	k: 844	n:1460000
Cons ci ratio: 1.373511e-02	ci left: 5.247876e-02	ci right 5.320521e-02	k: 77148	n:1460000
KS ci ratio: 1.019128e-01	ci left: 9.607274e-04	ci right 1.064556e-03	k: 1477	n:1460000
SPEG   1460000 perm   1181 sec   (1237 perm/sec)   p_kst 1.011644e-03   p_cons 5.284110e-02   p_joint 5.780822e-04

Joint ci ratio: 1.344160e-01	ci left: 5.393600e-04	ci right 6.177314e-04	k: 849	n:1470000
Cons ci ratio: 1.368919e-02	ci left: 5.247361e-02	ci right 5.319754e-02	k: 77667	n:1470000
KS ci ratio: 1.015356e-01	ci left: 9.614845e-04	ci right 1.064987e-03	k: 1488	n:1470000
SPEG   1470000 perm   1194 sec   (1231 perm/sec)   p_kst 1.012245e-03   p_cons 5.283469e-02   p_joint 5.775510e-04

Joint ci ratio: 1.341795e-01	ci left: 5.376746e-04	ci right 6.156527e-04	k: 852	n:1480000
Cons ci ratio: 1.363939e-02	ci left: 5.250019e-02	ci right 5.322183e-02	k: 78233	n:1480000
KS ci ratio: 1.011964e-01	ci left: 9.615734e-04	ci right 1.064720e-03	k: 1498	n:1480000
SPEG   1480000 perm   1208 sec   (1225 perm/sec)   p_kst 1.012162e-03   p_cons 5.286014e-02   p_joint 5.756757e-04

Joint ci ratio: 1.335546e-01	ci left: 5.392554e-04	ci right 6.170696e-04	k: 860	n:1490000
Cons ci ratio: 1.359862e-02	ci left: 5.246420e-02	ci right 5.318318e-02	k: 78706	n:1490000
KS ci ratio: 1.006937e-01	ci left: 9.649329e-04	ci right 1.067895e-03	k: 1513	n:1490000
SPEG   1490000 perm   1221 sec   (1220 perm/sec)   p_kst 1.015436e-03   p_cons 5.282282e-02   p_joint 5.771812e-04

Joint ci ratio: 1.334773e-01	ci left: 5.363047e-04	ci right 6.136448e-04	k: 861	n:1500000
Cons ci ratio: 1.355332e-02	ci left: 5.246458e-02	ci right 5.318115e-02	k: 79233	n:1500000
KS ci ratio: 1.002969e-01	ci left: 9.662990e-04	ci right 1.068977e-03	k: 1525	n:1500000
SPEG   1500000 perm   1235 sec   (1215 perm/sec)   p_kst 1.016667e-03   p_cons 5.282200e-02   p_joint 5.740000e-04

Joint ci ratio: 1.332458e-01	ci left: 5.346734e-04	ci right 6.116340e-04	k: 864	n:1510000
Cons ci ratio: 1.351161e-02	ci left: 5.244185e-02	ci right 5.315589e-02	k: 79725	n:1510000
KS ci ratio: 1.001005e-01	ci left: 9.637736e-04	ci right 1.065970e-03	k: 1531	n:1510000
SPEG   1510000 perm   1248 sec   (1210 perm/sec)   p_kst 1.013907e-03   p_cons 5.279801e-02   p_joint 5.721854e-04

Joint ci ratio: 1.325578e-01	ci left: 5.368801e-04	ci right 6.137278e-04	k: 873	n:1520000
Cons ci ratio: 1.346567e-02	ci left: 5.245353e-02	ci right 5.316528e-02	k: 80269	n:1520000
KS ci ratio: 9.971066e-02	ci left: 9.651305e-04	ci right 1.067049e-03	k: 1543	n:1520000
SPEG   1520000 perm   1262 sec   (1204 perm/sec)   p_kst 1.015132e-03   p_cons 5.280855e-02   p_joint 5.743421e-04

Joint ci ratio: 1.316568e-01	ci left: 5.409551e-04	ci right 6.178186e-04	k: 885	n:1530000
Cons ci ratio: 1.342029e-02	ci left: 5.246441e-02	ci right 5.317389e-02	k: 80812	n:1530000
KS ci ratio: 9.922966e-02	ci left: 9.683825e-04	ci right 1.070123e-03	k: 1558	n:1530000
SPEG   1530000 perm   1276 sec   (1199 perm/sec)   p_kst 1.018301e-03   p_cons 5.281830e-02   p_joint 5.784314e-04

Joint ci ratio: 1.316570e-01	ci left: 5.374423e-04	ci right 6.138069e-04	k: 885	n:1540000
Cons ci ratio: 1.337822e-02	ci left: 5.245379e-02	ci right 5.316088e-02	k: 81322	n:1540000
KS ci ratio: 9.900773e-02	ci left: 9.665271e-04	ci right 1.067832e-03	k: 1565	n:1540000
SPEG   1540000 perm   1289 sec   (1194 perm/sec)   p_kst 1.016234e-03   p_cons 5.280649e-02   p_joint 5.746753e-04

Joint ci ratio: 1.311400e-01	ci left: 5.383426e-04	ci right 6.145113e-04	k: 892	n:1550000
Cons ci ratio: 1.333328e-02	ci left: 5.246774e-02	ci right 5.317264e-02	k: 81870	n:1550000
KS ci ratio: 9.872449e-02	ci left: 9.659543e-04	ci right 1.066893e-03	k: 1574	n:1550000
SPEG   1550000 perm   1303 sec   (1189 perm/sec)   p_kst 1.015484e-03   p_cons 5.281935e-02   p_joint 5.754839e-04

Joint ci ratio: 1.334788e-01	ci left: 5.156772e-04	ci right 5.900435e-04	k: 861	n:1560000
Cons ci ratio: 1.328956e-02	ci left: 5.247578e-02	ci right 5.317845e-02	k: 82409	n:1560000
KS ci ratio: 9.841257e-02	ci left: 9.660145e-04	ci right 1.066622e-03	k: 1584	n:1560000
SPEG   1560000 perm   1317 sec   (1184 perm/sec)   p_kst 1.015385e-03   p_cons 5.282628e-02   p_joint 5.519231e-04

Joint ci ratio: 1.332472e-01	ci left: 5.142397e-04	ci right 5.882599e-04	k: 864	n:1570000
Cons ci ratio: 1.324804e-02	ci left: 5.247038e-02	ci right 5.317076e-02	k: 82927	n:1570000
KS ci ratio: 9.798067e-02	ci left: 9.685598e-04	ci right 1.068964e-03	k: 1598	n:1570000
SPEG   1570000 perm   1332 sec   (1179 perm/sec)   p_kst 1.017834e-03   p_cons 5.281975e-02   p_joint 5.503185e-04

Joint ci ratio: 1.328638e-01	ci left: 5.140442e-04	ci right 5.878065e-04	k: 869	n:1580000
Cons ci ratio: 1.320656e-02	ci left: 5.246757e-02	ci right 5.316571e-02	k: 83449	n:1580000
KS ci ratio: 9.749393e-02	ci left: 9.723088e-04	ci right 1.072573e-03	k: 1614	n:1580000
SPEG   1580000 perm   1346 sec   (1174 perm/sec)   p_kst 1.021519e-03   p_cons 5.281582e-02   p_joint 5.500000e-04

Joint ci ratio: 1.391685e-01	ci left: 4.640297e-04	ci right 5.340370e-04	k: 792	n:1590000
Cons ci ratio: 1.316523e-02	ci left: 5.246669e-02	ci right 5.316262e-02	k: 83974	n:1590000
KS ci ratio: 9.716357e-02	ci left: 9.729435e-04	ci right 1.072913e-03	k: 1625	n:1590000
SPEG   1590000 perm   1360 sec   (1169 perm/sec)   p_kst 1.022013e-03   p_cons 5.281384e-02   p_joint 4.981132e-04

Joint ci ratio: 1.411413e-01	ci left: 4.478614e-04	ci right 5.164678e-04	k: 770	n:1600000
Cons ci ratio: 1.312379e-02	ci left: 5.246956e-02	ci right 5.316331e-02	k: 84505	n:1600000
KS ci ratio: 9.689582e-02	ci left: 9.723511e-04	ci right 1.071969e-03	k: 1634	n:1600000
SPEG   1600000 perm   1374 sec   (1165 perm/sec)   p_kst 1.021250e-03   p_cons 5.281562e-02   p_joint 4.812500e-04

Joint ci ratio: 1.405048e-01	ci left: 4.492743e-04	ci right 5.177608e-04	k: 777	n:1610000
Cons ci ratio: 1.308177e-02	ci left: 5.247982e-02	ci right 5.317148e-02	k: 85048	n:1610000
KS ci ratio: 9.660086e-02	ci left: 9.723726e-04	ci right 1.071672e-03	k: 1644	n:1610000
SPEG   1610000 perm   1388 sec   (1160 perm/sec)   p_kst 1.021118e-03   p_cons 5.282484e-02   p_joint 4.826087e-04

Joint ci ratio: 1.403247e-01	ci left: 4.476922e-04	ci right 5.158427e-04	k: 779	n:1620000
Cons ci ratio: 1.304272e-02	ci left: 5.247027e-02	ci right 5.315972e-02	k: 85559	n:1620000
KS ci ratio: 9.619229e-02	ci left: 9.748040e-04	ci right 1.073907e-03	k: 1658	n:1620000
SPEG   1620000 perm   1402 sec   (1155 perm/sec)   p_kst 1.023457e-03   p_cons 5.281420e-02   p_joint 4.808642e-04

Joint ci ratio: 1.397880e-01	ci left: 4.484976e-04	ci right 5.164878e-04	k: 785	n:1630000
Cons ci ratio: 1.300074e-02	ci left: 5.248592e-02	ci right 5.317334e-02	k: 86111	n:1630000
KS ci ratio: 9.584622e-02	ci left: 9.760088e-04	ci right 1.074858e-03	k: 1670	n:1630000
SPEG   1630000 perm   1417 sec   (1150 perm/sec)   p_kst 1.024540e-03   p_cons 5.282883e-02   p_joint 4.815951e-04

Joint ci ratio: 1.393455e-01	ci left: 4.487052e-04	ci right 5.164937e-04	k: 790	n:1640000
Cons ci ratio: 1.296083e-02	ci left: 5.248861e-02	ci right 5.317394e-02	k: 86642	n:1640000
KS ci ratio: 9.558918e-02	ci left: 9.754139e-04	ci right 1.073923e-03	k: 1679	n:1640000
SPEG   1640000 perm   1432 sec   (1146 perm/sec)   p_kst 1.023780e-03   p_cons 5.283049e-02   p_joint 4.817073e-04

Joint ci ratio: 1.416024e-01	ci left: 4.313664e-04	ci right 4.976801e-04	k: 765	n:1650000
Cons ci ratio: 1.292121e-02	ci left: 5.249188e-02	ci right 5.317514e-02	k: 87174	n:1650000
KS ci ratio: 9.536246e-02	ci left: 9.742350e-04	ci right 1.072378e-03	k: 1687	n:1650000
SPEG   1650000 perm   1446 sec   (1141 perm/sec)   p_kst 1.022424e-03   p_cons 5.283273e-02   p_joint 4.636364e-04

Joint ci ratio: 1.406869e-01	ci left: 4.345793e-04	ci right 5.009187e-04	k: 775	n:1660000
Cons ci ratio: 1.288001e-02	ci left: 5.251013e-02	ci right 5.319143e-02	k: 87731	n:1660000
KS ci ratio: 9.505323e-02	ci left: 9.748349e-04	ci right 1.072703e-03	k: 1698	n:1660000
SPEG   1660000 perm   1461 sec   (1136 perm/sec)   p_kst 1.022892e-03   p_cons 5.285000e-02   p_joint 4.668675e-04

Joint ci ratio: 1.403257e-01	ci left: 4.342880e-04	ci right 5.003985e-04	k: 779	n:1670000
Cons ci ratio: 1.283966e-02	ci left: 5.252458e-02	ci right 5.320392e-02	k: 88282	n:1670000
KS ci ratio: 9.474699e-02	ci left: 9.754280e-04	ci right 1.073022e-03	k: 1709	n:1670000
SPEG   1670000 perm   1476 sec   (1132 perm/sec)   p_kst 1.023353e-03   p_cons 5.286347e-02   p_joint 4.664671e-04

Joint ci ratio: 1.397001e-01	ci left: 4.357237e-04	ci right 5.017325e-04	k: 786	n:1680000
Cons ci ratio: 1.280136e-02	ci left: 5.252580e-02	ci right 5.320312e-02	k: 88811	n:1680000
KS ci ratio: 9.441623e-02	ci left: 9.765959e-04	ci right 1.073947e-03	k: 1721	n:1680000
SPEG   1680000 perm   1491 sec   (1127 perm/sec)   p_kst 1.024405e-03   p_cons 5.286369e-02   p_joint 4.678571e-04

Joint ci ratio: 1.394347e-01	ci left: 4.348586e-04	ci right 5.006007e-04	k: 789	n:1690000
Cons ci ratio: 1.276054e-02	ci left: 5.254944e-02	ci right 5.322488e-02	k: 89378	n:1690000
KS ci ratio: 9.411609e-02	ci left: 9.771726e-04	ci right 1.074254e-03	k: 1732	n:1690000
SPEG   1690000 perm   1506 sec   (1122 perm/sec)   p_kst 1.024852e-03   p_cons 5.288639e-02   p_joint 4.668639e-04

Joint ci ratio: 1.389955e-01	ci left: 4.351393e-04	ci right 5.006996e-04	k: 794	n:1700000
Cons ci ratio: 1.272310e-02	ci left: 5.254933e-02	ci right 5.322278e-02	k: 89905	n:1700000
KS ci ratio: 9.398076e-02	ci left: 9.742965e-04	ci right 1.070946e-03	k: 1737	n:1700000
SPEG   1700000 perm   1521 sec   (1117 perm/sec)   p_kst 1.021765e-03   p_cons 5.288529e-02   p_joint 4.670588e-04

Joint ci ratio: 1.388211e-01	ci left: 4.337236e-04	ci right 4.989818e-04	k: 796	n:1710000
Cons ci ratio: 1.268605e-02	ci left: 5.254865e-02	ci right 5.322011e-02	k: 90431	n:1710000
KS ci ratio: 9.376527e-02	ci left: 9.731673e-04	ci right 1.069471e-03	k: 1745	n:1710000
SPEG   1710000 perm   1536 sec   (1113 perm/sec)   p_kst 1.020468e-03   p_cons 5.288363e-02   p_joint 4.654971e-04

Joint ci ratio: 1.385607e-01	ci left: 4.328856e-04	ci right 4.978854e-04	k: 799	n:1720000
Cons ci ratio: 1.264889e-02	ci left: 5.255146e-02	ci right 5.322098e-02	k: 90963	n:1720000
KS ci ratio: 9.349791e-02	ci left: 9.731872e-04	ci right 1.069203e-03	k: 1755	n:1720000
SPEG   1720000 perm   1552 sec   (1109 perm/sec)   p_kst 1.020349e-03   p_cons 5.288547e-02   p_joint 4.645349e-04

Joint ci ratio: 1.383016e-01	ci left: 4.320574e-04	ci right 4.968016e-04	k: 802	n:1730000
Cons ci ratio: 1.261256e-02	ci left: 5.255020e-02	ci right 5.321777e-02	k: 91488	n:1730000
KS ci ratio: 9.307468e-02	ci left: 9.765947e-04	ci right 1.072487e-03	k: 1771	n:1730000
SPEG   1730000 perm   1567 sec   (1104 perm/sec)   p_kst 1.023699e-03   p_cons 5.288324e-02   p_joint 4.635838e-04

Joint ci ratio: 1.377878e-01	ci left: 4.329035e-04	ci right 4.975137e-04	k: 808	n:1740000
Cons ci ratio: 1.257740e-02	ci left: 5.254209e-02	ci right 5.320768e-02	k: 92001	n:1740000
KS ci ratio: 9.286535e-02	ci left: 9.754729e-04	ci right 1.071028e-03	k: 1779	n:1740000
SPEG   1740000 perm   1582 sec   (1100 perm/sec)   p_kst 1.022414e-03   p_cons 5.287414e-02   p_joint 4.643678e-04

Joint ci ratio: 1.386479e-01	ci left: 4.249130e-04	ci right 4.887591e-04	k: 798	n:1750000
Cons ci ratio: 1.254161e-02	ci left: 5.254148e-02	ci right 5.320515e-02	k: 92527	n:1750000
KS ci ratio: 9.232206e-02	ci left: 9.816210e-04	ci right 1.077185e-03	k: 1800	n:1750000
SPEG   1750000 perm   1598 sec   (1095 perm/sec)   p_kst 1.028571e-03   p_cons 5.287257e-02   p_joint 4.560000e-04

Joint ci ratio: 1.383022e-01	ci left: 4.246927e-04	ci right 4.883335e-04	k: 802	n:1760000
Cons ci ratio: 1.250513e-02	ci left: 5.254880e-02	ci right 5.321062e-02	k: 93067	n:1760000
KS ci ratio: 9.171265e-02	ci left: 9.893664e-04	ci right 1.085015e-03	k: 1824	n:1760000
SPEG   1760000 perm   1613 sec   (1091 perm/sec)   p_kst 1.036364e-03   p_cons 5.287898e-02   p_joint 4.556818e-04

Joint ci ratio: 1.396131e-01	ci left: 4.141132e-04	ci right 4.768057e-04	k: 787	n:1770000
Cons ci ratio: 1.247052e-02	ci left: 5.254366e-02	ci right 5.320357e-02	k: 93585	n:1770000
KS ci ratio: 9.146242e-02	ci left: 9.892971e-04	ci right 1.084664e-03	k: 1834	n:1770000
SPEG   1770000 perm   1629 sec   (1087 perm/sec)   p_kst 1.036158e-03   p_cons 5.287288e-02   p_joint 4.446328e-04

Joint ci ratio: 1.393481e-01	ci left: 4.134132e-04	ci right 4.758712e-04	k: 790	n:1780000
Cons ci ratio: 1.243431e-02	ci left: 5.255370e-02	ci right 5.321180e-02	k: 94130	n:1780000
KS ci ratio: 9.109075e-02	ci left: 9.919739e-04	ci right 1.087190e-03	k: 1849	n:1780000
SPEG   1780000 perm   1644 sec   (1083 perm/sec)   p_kst 1.038764e-03   p_cons 5.288202e-02   p_joint 4.438202e-04

Joint ci ratio: 1.403279e-01	ci left: 4.051733e-04	ci right 4.668528e-04	k: 779	n:1790000
Cons ci ratio: 1.239785e-02	ci left: 5.256808e-02	ci right 5.322443e-02	k: 94683	n:1790000
KS ci ratio: 9.089449e-02	ci left: 9.907997e-04	ci right 1.085687e-03	k: 1857	n:1790000
SPEG   1790000 perm   1660 sec   (1078 perm/sec)   p_kst 1.037430e-03   p_cons 5.289553e-02   p_joint 4.351955e-04

Joint ci ratio: 1.402382e-01	ci left: 4.034584e-04	ci right 4.648342e-04	k: 780	n:1800000
Cons ci ratio: 1.236199e-02	ci left: 5.258010e-02	ci right 5.323468e-02	k: 95232	n:1800000
KS ci ratio: 9.062660e-02	ci left: 9.912676e-04	ci right 1.085905e-03	k: 1868	n:1800000
SPEG   1800000 perm   1676 sec   (1074 perm/sec)   p_kst 1.037778e-03   p_cons 5.290667e-02   p_joint 4.333333e-04

Joint ci ratio: 1.397025e-01	ci left: 4.044282e-04	ci right 4.656970e-04	k: 786	n:1810000
Cons ci ratio: 1.232780e-02	ci left: 5.258096e-02	ci right 5.323373e-02	k: 95761	n:1810000
KS ci ratio: 9.045745e-02	ci left: 9.895708e-04	ci right 1.083861e-03	k: 1875	n:1810000
SPEG   1810000 perm   1692 sec   (1070 perm/sec)   p_kst 1.035912e-03   p_cons 5.290663e-02   p_joint 4.342541e-04

Joint ci ratio: 1.404185e-01	ci left: 3.979644e-04	ci right 4.585888e-04	k: 778	n:1820000
Cons ci ratio: 1.229174e-02	ci left: 5.259935e-02	ci right 5.325042e-02	k: 96322	n:1820000
KS ci ratio: 9.024128e-02	ci left: 9.889669e-04	ci right 1.082962e-03	k: 1884	n:1820000
SPEG   1820000 perm   1708 sec   (1066 perm/sec)   p_kst 1.035165e-03   p_cons 5.292418e-02   p_joint 4.274725e-04

Joint ci ratio: 1.394372e-01	ci left: 4.015902e-04	ci right 4.623040e-04	k: 789	n:1830000
Cons ci ratio: 1.225852e-02	ci left: 5.259684e-02	ci right 5.324611e-02	k: 96845	n:1830000
KS ci ratio: 8.997911e-02	ci left: 9.894382e-04	ci right 1.083191e-03	k: 1895	n:1830000
SPEG   1830000 perm   1724 sec   (1062 perm/sec)   p_kst 1.035519e-03   p_cons 5.292077e-02   p_joint 4.311475e-04

Joint ci ratio: 1.388234e-01	ci left: 4.030796e-04	ci right 4.637282e-04	k: 796	n:1840000
Cons ci ratio: 1.222757e-02	ci left: 5.257810e-02	ci right 5.322548e-02	k: 97338	n:1840000
KS ci ratio: 8.976634e-02	ci left: 9.888422e-04	ci right 1.082305e-03	k: 1904	n:1840000
SPEG   1840000 perm   1740 sec   (1058 perm/sec)   p_kst 1.034783e-03   p_cons 5.290109e-02   p_joint 4.326087e-04

Joint ci ratio: 1.379604e-01	ci left: 4.061191e-04	ci right 4.668139e-04	k: 806	n:1850000
Cons ci ratio: 1.219559e-02	ci left: 5.256980e-02	ci right 5.321538e-02	k: 97850	n:1850000
KS ci ratio: 8.950827e-02	ci left: 9.893098e-04	ci right 1.082534e-03	k: 1915	n:1850000
SPEG   1850000 perm   1756 sec   (1054 perm/sec)   p_kst 1.035135e-03   p_cons 5.289189e-02   p_joint 4.356757e-04

Joint ci ratio: 1.377047e-01	ci left: 4.054930e-04	ci right 4.659727e-04	k: 809	n:1860000
Cons ci ratio: 1.216459e-02	ci left: 5.255570e-02	ci right 5.319946e-02	k: 98351	n:1860000
KS ci ratio: 8.929882e-02	ci left: 9.887214e-04	ci right 1.081661e-03	k: 1924	n:1860000
SPEG   1860000 perm   1772 sec   (1050 perm/sec)   p_kst 1.034409e-03   p_cons 5.287688e-02   p_joint 4.349462e-04

Joint ci ratio: 1.285099e-01	ci left: 4.653623e-04	ci right 5.297839e-04	k: 929	n:1870000
Cons ci ratio: 1.213563e-02	ci left: 5.252682e-02	ci right 5.316868e-02	k: 98824	n:1870000
KS ci ratio: 8.902174e-02	ci left: 9.897082e-04	ci right 1.082436e-03	k: 1936	n:1870000
SPEG   1870000 perm   1788 sec   (1046 perm/sec)   p_kst 1.035294e-03   p_cons 5.284706e-02   p_joint 4.967914e-04

Joint ci ratio: 1.291367e-01	ci left: 4.582539e-04	ci right 5.220246e-04	k: 920	n:1880000
Cons ci ratio: 1.210167e-02	ci left: 5.254121e-02	ci right 5.318144e-02	k: 99378	n:1880000
KS ci ratio: 8.872445e-02	ci left: 9.912050e-04	ci right 1.083747e-03	k: 1949	n:1880000
SPEG   1880000 perm   1804 sec   (1042 perm/sec)   p_kst 1.036702e-03   p_cons 5.286064e-02   p_joint 4.893617e-04

Joint ci ratio: 1.287876e-01	ci left: 4.583894e-04	ci right 5.219934e-04	k: 925	n:1890000
Cons ci ratio: 1.206959e-02	ci left: 5.254227e-02	ci right 5.318080e-02	k: 99907	n:1890000
KS ci ratio: 8.843011e-02	ci left: 9.926865e-04	ci right 1.085044e-03	k: 1962	n:1890000
SPEG   1890000 perm   1820 sec   (1038 perm/sec)   p_kst 1.038095e-03   p_cons 5.286085e-02   p_joint 4.894180e-04

Joint ci ratio: 1.290670e-01	ci left: 4.539394e-04	ci right 5.170730e-04	k: 921	n:1900000
Cons ci ratio: 1.203802e-02	ci left: 5.254121e-02	ci right 5.317805e-02	k: 100432	n:1900000
KS ci ratio: 8.827294e-02	ci left: 9.910647e-04	ci right 1.083099e-03	k: 1969	n:1900000
SPEG   1900000 perm   1836 sec   (1035 perm/sec)   p_kst 1.036316e-03   p_cons 5.285895e-02   p_joint 4.847368e-04

Joint ci ratio: 1.293481e-01	ci left: 4.495361e-04	ci right 5.122040e-04	k: 917	n:1910000
Cons ci ratio: 1.200763e-02	ci left: 5.253234e-02	ci right 5.316745e-02	k: 100942	n:1910000
KS ci ratio: 8.809430e-02	ci left: 9.899719e-04	ci right 1.081709e-03	k: 1977	n:1910000
SPEG   1910000 perm   1853 sec   (1031 perm/sec)   p_kst 1.035079e-03   p_cons 5.284921e-02   p_joint 4.801047e-04

Joint ci ratio: 1.287881e-01	ci left: 4.512270e-04	ci right 5.138374e-04	k: 925	n:1920000
Cons ci ratio: 1.197604e-02	ci left: 5.253550e-02	ci right 5.316897e-02	k: 101475	n:1920000
KS ci ratio: 8.782825e-02	ci left: 9.909284e-04	ci right 1.082462e-03	k: 1989	n:1920000
SPEG   1920000 perm   1869 sec   (1027 perm/sec)   p_kst 1.035937e-03   p_cons 5.285156e-02   p_joint 4.817708e-04

Joint ci ratio: 1.286493e-01	ci left: 4.498919e-04	ci right 5.122447e-04	k: 927	n:1930000
Cons ci ratio: 1.194785e-02	ci left: 5.251229e-02	ci right 5.314397e-02	k: 101957	n:1930000
KS ci ratio: 8.758650e-02	ci left: 9.913685e-04	ci right 1.082678e-03	k: 2000	n:1930000
SPEG   1930000 perm   1886 sec   (1023 perm/sec)   p_kst 1.036269e-03   p_cons 5.282746e-02   p_joint 4.803109e-04

Joint ci ratio: 1.285110e-01	ci left: 4.485706e-04	ci right 5.106683e-04	k: 929	n:1940000
Cons ci ratio: 1.191709e-02	ci left: 5.251245e-02	ci right 5.314250e-02	k: 102484	n:1940000
KS ci ratio: 8.749923e-02	ci left: 9.882750e-04	ci right 1.079204e-03	k: 2004	n:1940000
SPEG   1940000 perm   1902 sec   (1020 perm/sec)   p_kst 1.032990e-03   p_cons 5.282680e-02   p_joint 4.788660e-04

Joint ci ratio: 1.280300e-01	ci left: 4.497448e-04	ci right 5.117544e-04	k: 936	n:1950000
Cons ci ratio: 1.188609e-02	ci left: 5.251670e-02	ci right 5.314515e-02	k: 103019	n:1950000
KS ci ratio: 8.723852e-02	ci left: 9.892263e-04	ci right 1.079958e-03	k: 2016	n:1950000
SPEG   1950000 perm   1919 sec   (1016 perm/sec)   p_kst 1.033846e-03   p_cons 5.283026e-02   p_joint 4.800000e-04

Joint ci ratio: 1.283045e-01	ci left: 4.454747e-04	ci right 5.070372e-04	k: 932	n:1960000
Cons ci ratio: 1.185708e-02	ci left: 5.250615e-02	ci right 5.313293e-02	k: 103525	n:1960000
KS ci ratio: 8.683032e-02	ci left: 9.936623e-04	ci right 1.084353e-03	k: 2035	n:1960000
SPEG   1960000 perm   1936 sec   (1013 perm/sec)   p_kst 1.038265e-03   p_cons 5.281888e-02   p_joint 4.755102e-04

Joint ci ratio: 1.281672e-01	ci left: 4.441961e-04	ci right 5.055112e-04	k: 934	n:1970000
Cons ci ratio: 1.182816e-02	ci left: 5.249672e-02	ci right 5.312185e-02	k: 104033	n:1970000
KS ci ratio: 8.655437e-02	ci left: 9.950742e-04	ci right 1.085591e-03	k: 2048	n:1970000
SPEG   1970000 perm   1953 sec   (1009 perm/sec)   p_kst 1.039594e-03   p_cons 5.280863e-02   p_joint 4.741117e-04

Joint ci ratio: 1.279622e-01	ci left: 4.434193e-04	ci right 5.045218e-04	k: 937	n:1980000
Cons ci ratio: 1.179706e-02	ci left: 5.250754e-02	ci right 5.313114e-02	k: 104581	n:1980000
KS ci ratio: 8.632296e-02	ci left: 9.954841e-04	ci right 1.085783e-03	k: 2059	n:1980000
SPEG   1980000 perm   1970 sec   (1005 perm/sec)   p_kst 1.039899e-03   p_cons 5.281869e-02   p_joint 4.732323e-04

Joint ci ratio: 1.280990e-01	ci left: 4.402182e-04	ci right 5.009494e-04	k: 935	n:1990000
Cons ci ratio: 1.176539e-02	ci left: 5.252527e-02	ci right 5.314739e-02	k: 105143	n:1990000
KS ci ratio: 8.605181e-02	ci left: 9.968735e-04	ci right 1.087001e-03	k: 2072	n:1990000
SPEG   1990000 perm   1987 sec   (1002 perm/sec)   p_kst 1.041206e-03   p_cons 5.283568e-02   p_joint 4.698492e-04

Joint ci ratio: 1.279625e-01	ci left: 4.389850e-04	ci right 4.994767e-04	k: 937	n:2000000
Cons ci ratio: 1.173678e-02	ci left: 5.251888e-02	ci right 5.313941e-02	k: 105657	n:2000000
KS ci ratio: 8.584501e-02	ci left: 9.967817e-04	ci right 1.086673e-03	k: 2082	n:2000000
SPEG   2000000 perm   2004 sec   (998 perm/sec)   p_kst 1.041000e-03   p_cons 5.282850e-02   p_joint 4.685000e-04

Joint ci ratio: 1.276228e-01	ci left: 4.392091e-04	ci right 4.995588e-04	k: 942	n:2010000
Cons ci ratio: 1.170663e-02	ci left: 5.252745e-02	ci right 5.314648e-02	k: 106201	n:2010000
KS ci ratio: 8.553748e-02	ci left: 9.991254e-04	ci right 1.088889e-03	k: 2097	n:2010000
SPEG   2010000 perm   2021 sec   (994 perm/sec)   p_kst 1.043284e-03   p_cons 5.283632e-02   p_joint 4.686567e-04

Joint ci ratio: 1.272858e-01	ci left: 4.394311e-04	ci right 4.996398e-04	k: 947	n:2020000
Cons ci ratio: 1.167770e-02	ci left: 5.252754e-02	ci right 5.314503e-02	k: 106728	n:2020000
KS ci ratio: 8.527364e-02	ci left: 1.000477e-03	ci right 1.090072e-03	k: 2110	n:2020000
SPEG   2020000 perm   2039 sec   (991 perm/sec)   p_kst 1.044554e-03   p_cons 5.283564e-02   p_joint 4.688119e-04

Joint ci ratio: 1.270849e-01	ci left: 4.386972e-04	ci right 4.987034e-04	k: 950	n:2030000
Cons ci ratio: 1.164812e-02	ci left: 5.253500e-02	ci right 5.315100e-02	k: 107270	n:2030000
KS ci ratio: 8.505232e-02	ci left: 1.000852e-03	ci right 1.090236e-03	k: 2121	n:2030000
SPEG   2030000 perm   2056 sec   (987 perm/sec)   p_kst 1.044828e-03   p_cons 5.284236e-02   p_joint 4.679803e-04

Joint ci ratio: 1.272861e-01	ci left: 4.351229e-04	ci right 4.947415e-04	k: 947	n:2040000
Cons ci ratio: 1.162053e-02	ci left: 5.252724e-02	ci right 5.314168e-02	k: 107781	n:2040000
KS ci ratio: 8.469371e-02	ci left: 1.004583e-03	ci right 1.093902e-03	k: 2139	n:2040000
SPEG   2040000 perm   2073 sec   (984 perm/sec)   p_kst 1.048529e-03   p_cons 5.283382e-02   p_joint 4.642157e-04

Joint ci ratio: 1.269517e-01	ci left: 4.353618e-04	ci right 4.948446e-04	k: 952	n:2050000
Cons ci ratio: 1.158918e-02	ci left: 5.255361e-02	ci right 5.316668e-02	k: 108362	n:2050000
KS ci ratio: 8.455560e-02	ci left: 1.003024e-03	ci right 1.092053e-03	k: 2146	n:2050000
SPEG   2050000 perm   2091 sec   (980 perm/sec)   p_kst 1.046829e-03   p_cons 5.285951e-02   p_joint 4.643902e-04

Joint ci ratio: 1.266200e-01	ci left: 4.355986e-04	ci right 4.949466e-04	k: 957	n:2060000
Cons ci ratio: 1.155931e-02	ci left: 5.256907e-02	ci right 5.318073e-02	k: 108921	n:2060000
KS ci ratio: 8.435938e-02	ci left: 1.002907e-03	ci right 1.091709e-03	k: 2156	n:2060000
SPEG   2060000 perm   2108 sec   (977 perm/sec)   p_kst 1.046602e-03   p_cons 5.287427e-02   p_joint 4.645631e-04

Joint ci ratio: 1.260945e-01	ci left: 4.372369e-04	ci right 4.965424e-04	k: 965	n:2070000
Cons ci ratio: 1.153117e-02	ci left: 5.257137e-02	ci right 5.318157e-02	k: 109453	n:2070000
KS ci ratio: 8.416452e-02	ci left: 1.002791e-03	ci right 1.091368e-03	k: 2166	n:2070000
SPEG   2070000 perm   2126 sec   (974 perm/sec)   p_kst 1.046377e-03   p_cons 5.287585e-02   p_joint 4.661836e-04

Joint ci ratio: 1.274212e-01	ci left: 4.258241e-04	ci right 4.842352e-04	k: 945	n:2080000
Cons ci ratio: 1.150236e-02	ci left: 5.258133e-02	ci right 5.319011e-02	k: 110001	n:2080000
KS ci ratio: 8.395171e-02	ci left: 1.003148e-03	ci right 1.091520e-03	k: 2177	n:2080000
SPEG   2080000 perm   2143 sec   (970 perm/sec)   p_kst 1.046635e-03   p_cons 5.288510e-02   p_joint 4.543269e-04

Joint ci ratio: 1.269523e-01	ci left: 4.270294e-04	ci right 4.853741e-04	k: 952	n:2090000
Cons ci ratio: 1.147529e-02	ci left: 5.257783e-02	ci right 5.318513e-02	k: 110521	n:2090000
KS ci ratio: 8.374050e-02	ci left: 1.003501e-03	ci right 1.091671e-03	k: 2188	n:2090000
SPEG   2090000 perm   2161 sec   (967 perm/sec)   p_kst 1.046890e-03   p_cons 5.288086e-02   p_joint 4.555024e-04

Joint ci ratio: 1.274215e-01	ci left: 4.217686e-04	ci right 4.796235e-04	k: 945	n:2100000
Cons ci ratio: 1.145109e-02	ci left: 5.255110e-02	ci right 5.315680e-02	k: 110992	n:2100000
KS ci ratio: 8.354988e-02	ci left: 1.003384e-03	ci right 1.091334e-03	k: 2198	n:2100000
SPEG   2100000 perm   2179 sec   (964 perm/sec)   p_kst 1.046667e-03   p_cons 5.285333e-02   p_joint 4.500000e-04

Joint ci ratio: 1.271529e-01	ci left: 4.216050e-04	ci right 4.793065e-04	k: 949	n:2110000
Cons ci ratio: 1.142400e-02	ci left: 5.255109e-02	ci right 5.315535e-02	k: 111519	n:2110000
KS ci ratio: 8.345517e-02	ci left: 1.000949e-03	ci right 1.088581e-03	k: 2203	n:2110000
SPEG   2110000 perm   2198 sec   (960 perm/sec)   p_kst 1.044076e-03   p_cons 5.285261e-02   p_joint 4.497630e-04

Joint ci ratio: 1.268861e-01	ci left: 4.214432e-04	ci right 4.789923e-04	k: 953	n:2120000
Cons ci ratio: 1.139754e-02	ci left: 5.254732e-02	ci right 5.315013e-02	k: 112038	n:2120000
KS ci ratio: 8.321008e-02	ci left: 1.002232e-03	ci right 1.089706e-03	k: 2216	n:2120000
SPEG   2120000 perm   2215 sec   (957 perm/sec)   p_kst 1.045283e-03   p_cons 5.284811e-02   p_joint 4.495283e-04

Joint ci ratio: 1.264889e-01	ci left: 4.221922e-04	ci right 4.796497e-04	k: 959	n:2130000
Cons ci ratio: 1.136977e-02	ci left: 5.255670e-02	ci right 5.315813e-02	k: 112585	n:2130000
KS ci ratio: 8.300440e-02	ci left: 1.002584e-03	ci right 1.089862e-03	k: 2227	n:2130000
SPEG   2130000 perm   2233 sec   (954 perm/sec)   p_kst 1.045540e-03   p_cons 5.285681e-02   p_joint 4.502347e-04

Joint ci ratio: 1.260954e-01	ci left: 4.229345e-04	ci right 4.803006e-04	k: 965	n:2140000
Cons ci ratio: 1.134431e-02	ci left: 5.254735e-02	ci right 5.314732e-02	k: 113092	n:2140000
KS ci ratio: 8.280024e-02	ci left: 1.002932e-03	ci right 1.090016e-03	k: 2238	n:2140000
SPEG   2140000 perm   2251 sec   (951 perm/sec)   p_kst 1.045794e-03   p_cons 5.284673e-02   p_joint 4.509346e-04

Joint ci ratio: 1.258352e-01	ci left: 4.227692e-04	ci right 4.799857e-04	k: 969	n:2150000
Cons ci ratio: 1.131882e-02	ci left: 5.253994e-02	ci right 5.313847e-02	k: 113603	n:2150000
KS ci ratio: 8.263436e-02	ci left: 1.002367e-03	ci right 1.089218e-03	k: 2247	n:2150000
SPEG   2150000 perm   2269 sec   (947 perm/sec)   p_kst 1.045116e-03   p_cons 5.283860e-02   p_joint 4.506977e-04

Joint ci ratio: 1.257057e-01	ci left: 4.217087e-04	ci right 4.787186e-04	k: 971	n:2160000
Cons ci ratio: 1.129360e-02	ci left: 5.253168e-02	ci right 5.312878e-02	k: 114112	n:2160000
KS ci ratio: 8.254272e-02	ci left: 9.999934e-04	ci right 1.086538e-03	k: 2252	n:2160000
SPEG   2160000 perm   2288 sec   (944 perm/sec)   p_kst 1.042593e-03   p_cons 5.282963e-02   p_joint 4.495370e-04

Joint ci ratio: 1.257059e-01	ci left: 4.197654e-04	ci right 4.765125e-04	k: 971	n:2170000
Cons ci ratio: 1.126813e-02	ci left: 5.252718e-02	ci right 5.312286e-02	k: 114629	n:2170000
KS ci ratio: 8.241485e-02	ci left: 9.985444e-04	ci right 1.084824e-03	k: 2259	n:2170000
SPEG   2170000 perm   2306 sec   (941 perm/sec)   p_kst 1.041014e-03   p_cons 5.282442e-02   p_joint 4.474654e-04

Joint ci ratio: 1.254480e-01	ci left: 4.196170e-04	ci right 4.762192e-04	k: 975	n:2180000
Cons ci ratio: 1.124330e-02	ci left: 5.251860e-02	ci right 5.311287e-02	k: 115137	n:2180000
KS ci ratio: 8.210650e-02	ci left: 1.001602e-03	ci right 1.087806e-03	k: 2276	n:2180000
SPEG   2180000 perm   2324 sec   (938 perm/sec)   p_kst 1.044037e-03   p_cons 5.281514e-02   p_joint 4.472477e-04

Joint ci ratio: 1.251918e-01	ci left: 4.194702e-04	ci right 4.759284e-04	k: 979	n:2190000
Cons ci ratio: 1.121848e-02	ci left: 5.251146e-02	ci right 5.310433e-02	k: 115648	n:2190000
KS ci ratio: 8.198065e-02	ci left: 1.000159e-03	ci right 1.086101e-03	k: 2283	n:2190000
SPEG   2190000 perm   2343 sec   (935 perm/sec)   p_kst 1.042466e-03   p_cons 5.280731e-02   p_joint 4.470320e-04

Joint ci ratio: 1.259658e-01	ci left: 4.122802e-04	ci right 4.681394e-04	k: 967	n:2200000
Cons ci ratio: 1.119393e-02	ci left: 5.250349e-02	ci right 5.309496e-02	k: 116157	n:2200000
KS ci ratio: 8.190907e-02	ci left: 9.973936e-04	ci right 1.083019e-03	k: 2287	n:2200000
SPEG   2200000 perm   2361 sec   (932 perm/sec)   p_kst 1.039545e-03   p_cons 5.279864e-02   p_joint 4.395455e-04

Joint ci ratio: 1.266881e-01	ci left: 4.055945e-04	ci right 4.608866e-04	k: 956	n:2210000
Cons ci ratio: 1.116786e-02	ci left: 5.251048e-02	ci right 5.310065e-02	k: 116699	n:2210000
KS ci ratio: 8.174847e-02	ci left: 9.968696e-04	ci right 1.082275e-03	k: 2296	n:2210000
SPEG   2210000 perm   2380 sec   (929 perm/sec)   p_kst 1.038914e-03   p_cons 5.280498e-02   p_joint 4.325792e-04

Joint ci ratio: 1.262273e-01	ci left: 4.068210e-04	ci right 4.620634e-04	k: 963	n:2220000
Cons ci ratio: 1.114384e-02	ci left: 5.250079e-02	ci right 5.308957e-02	k: 117204	n:2220000
KS ci ratio: 8.155342e-02	ci left: 9.972330e-04	ci right 1.082456e-03	k: 2307	n:2220000
SPEG   2220000 perm   2399 sec   (925 perm/sec)   p_kst 1.039189e-03   p_cons 5.279459e-02   p_joint 4.337838e-04

Joint ci ratio: 1.260966e-01	ci left: 4.058652e-04	ci right 4.609165e-04	k: 965	n:2230000
Cons ci ratio: 1.111942e-02	ci left: 5.249611e-02	ci right 5.308353e-02	k: 117720	n:2230000
KS ci ratio: 8.139490e-02	ci left: 9.967147e-04	ci right 1.081720e-03	k: 2316	n:2230000
SPEG   2230000 perm   2419 sec   (922 perm/sec)   p_kst 1.038565e-03   p_cons 5.278924e-02   p_joint 4.327354e-04

Joint ci ratio: 1.260315e-01	ci left: 4.044856e-04	ci right 4.593194e-04	k: 966	n:2240000
Cons ci ratio: 1.109442e-02	ci left: 5.249814e-02	ci right 5.308426e-02	k: 118251	n:2240000
KS ci ratio: 8.130732e-02	ci left: 9.944518e-04	ci right 1.079168e-03	k: 2321	n:2240000
SPEG   2240000 perm   2438 sec   (919 perm/sec)   p_kst 1.036161e-03   p_cons 5.279063e-02   p_joint 4.312500e-04

Joint ci ratio: 1.259014e-01	ci left: 4.035488e-04	ci right 4.581948e-04	k: 968	n:2250000
Cons ci ratio: 1.106870e-02	ci left: 5.250814e-02	ci right 5.309301e-02	k: 118800	n:2250000
KS ci ratio: 8.118510e-02	ci left: 9.930799e-04	ci right 1.077546e-03	k: 2328	n:2250000
SPEG   2250000 perm   2456 sec   (916 perm/sec)   p_kst 1.034667e-03   p_cons 5.280000e-02   p_joint 4.302222e-04

Joint ci ratio: 1.254490e-01	ci left: 4.047632e-04	ci right 4.593621e-04	k: 975	n:2260000
Cons ci ratio: 1.104194e-02	ci left: 5.252909e-02	ci right 5.311276e-02	k: 119374	n:2260000
KS ci ratio: 8.099405e-02	ci left: 9.934543e-04	ci right 1.077744e-03	k: 2339	n:2260000
SPEG   2260000 perm   2475 sec   (913 perm/sec)   p_kst 1.034956e-03   p_cons 5.282035e-02   p_joint 4.314159e-04

Joint ci ratio: 1.250651e-01	ci left: 4.055404e-04	ci right 4.600644e-04	k: 981	n:2270000
Cons ci ratio: 1.102032e-02	ci left: 5.250504e-02	ci right 5.308729e-02	k: 119846	n:2270000
KS ci ratio: 8.071845e-02	ci left: 9.959838e-04	ci right 1.080187e-03	k: 2355	n:2270000
SPEG   2270000 perm   2495 sec   (910 perm/sec)   p_kst 1.037445e-03   p_cons 5.279559e-02   p_joint 4.321586e-04

Joint ci ratio: 1.248746e-01	ci left: 4.050364e-04	ci right 4.594035e-04	k: 984	n:2280000
Cons ci ratio: 1.099791e-02	ci left: 5.248951e-02	ci right 5.307040e-02	k: 120337	n:2280000
KS ci ratio: 8.056475e-02	ci left: 9.954832e-04	ci right 1.079477e-03	k: 2364	n:2280000
SPEG   2280000 perm   2514 sec   (907 perm/sec)   p_kst 1.036842e-03   p_cons 5.277939e-02   p_joint 4.315789e-04

Joint ci ratio: 1.290023e-01	ci left: 3.770526e-04	ci right 4.294645e-04	k: 922	n:2290000
Cons ci ratio: 1.097424e-02	ci left: 5.248675e-02	ci right 5.306635e-02	k: 120857	n:2290000
KS ci ratio: 8.036110e-02	ci left: 9.962709e-04	ci right 1.080108e-03	k: 2376	n:2290000
SPEG   2290000 perm   2533 sec   (904 perm/sec)   p_kst 1.037555e-03   p_cons 5.277598e-02   p_joint 4.026201e-04

Joint ci ratio: 1.287932e-01	ci left: 3.766755e-04	ci right 4.289437e-04	k: 925	n:2300000
Cons ci ratio: 1.095020e-02	ci left: 5.248878e-02	ci right 5.306713e-02	k: 121388	n:2300000
KS ci ratio: 8.022625e-02	ci left: 9.953477e-04	ci right 1.078960e-03	k: 2384	n:2300000
SPEG   2300000 perm   2552 sec   (901 perm/sec)   p_kst 1.036522e-03   p_cons 5.277739e-02   p_joint 4.021739e-04

Joint ci ratio: 1.287238e-01	ci left: 3.754638e-04	ci right 4.275336e-04	k: 926	n:2310000
Cons ci ratio: 1.092751e-02	ci left: 5.248000e-02	ci right 5.305705e-02	k: 121894	n:2310000
KS ci ratio: 8.002515e-02	ci left: 9.961296e-04	ci right 1.079588e-03	k: 2396	n:2310000
SPEG   2310000 perm   2572 sec   (898 perm/sec)   p_kst 1.037229e-03   p_cons 5.276797e-02   p_joint 4.008658e-04

Joint ci ratio: 1.305687e-01	ci left: 3.630018e-04	ci right 4.141208e-04	k: 900	n:2320000
Cons ci ratio: 1.090462e-02	ci left: 5.247431e-02	ci right 5.305008e-02	k: 122407	n:2320000
KS ci ratio: 7.985875e-02	ci left: 9.960601e-04	ci right 1.079331e-03	k: 2406	n:2320000
SPEG   2320000 perm   2591 sec   (895 perm/sec)   p_kst 1.037069e-03   p_cons 5.276164e-02   p_joint 3.879310e-04

Joint ci ratio: 1.299213e-01	ci left: 3.651807e-04	ci right 4.163319e-04	k: 909	n:2330000
Cons ci ratio: 1.088277e-02	ci left: 5.246054e-02	ci right 5.303500e-02	k: 122901	n:2330000
KS ci ratio: 7.972641e-02	ci left: 9.951501e-04	ci right 1.078201e-03	k: 2414	n:2330000
SPEG   2330000 perm   2611 sec   (892 perm/sec)   p_kst 1.036052e-03   p_cons 5.274721e-02   p_joint 3.901288e-04

Joint ci ratio: 1.296367e-01	ci left: 3.652740e-04	ci right 4.163176e-04	k: 913	n:2340000
Cons ci ratio: 1.085974e-02	ci left: 5.245882e-02	ci right 5.303203e-02	k: 123423	n:2340000
KS ci ratio: 7.961117e-02	ci left: 9.938291e-04	ci right 1.076644e-03	k: 2421	n:2340000
SPEG   2340000 perm   2631 sec   (890 perm/sec)   p_kst 1.034615e-03   p_cons 5.274487e-02   p_joint 3.901709e-04

Joint ci ratio: 1.294245e-01	ci left: 3.649549e-04	ci right 4.158640e-04	k: 916	n:2350000
Cons ci ratio: 1.083460e-02	ci left: 5.247791e-02	ci right 5.305000e-02	k: 123994	n:2350000
KS ci ratio: 7.948006e-02	ci left: 9.929366e-04	ci right 1.075535e-03	k: 2429	n:2350000
SPEG   2350000 perm   2651 sec   (887 perm/sec)   p_kst 1.033617e-03   p_cons 5.276340e-02   p_joint 3.897872e-04

Joint ci ratio: 1.291432e-01	ci left: 3.650486e-04	ci right 4.158515e-04	k: 920	n:2360000
Cons ci ratio: 1.081179e-02	ci left: 5.247698e-02	ci right 5.304785e-02	k: 124518	n:2360000
KS ci ratio: 7.923580e-02	ci left: 9.949591e-04	ci right 1.077460e-03	k: 2444	n:2360000
SPEG   2360000 perm   2670 sec   (884 perm/sec)   p_kst 1.035593e-03   p_cons 5.276186e-02   p_joint 3.898305e-04

Joint ci ratio: 1.302803e-01	ci left: 3.569762e-04	ci right 4.071270e-04	k: 904	n:2370000
Cons ci ratio: 1.078985e-02	ci left: 5.246932e-02	ci right 5.303894e-02	k: 125026	n:2370000
KS ci ratio: 7.902595e-02	ci left: 9.961377e-04	ci right 1.078507e-03	k: 2457	n:2370000
SPEG   2370000 perm   2690 sec   (881 perm/sec)   p_kst 1.036709e-03   p_cons 5.275359e-02   p_joint 3.814346e-04

Joint ci ratio: 1.315220e-01	ci left: 3.485672e-04	ci right 3.980399e-04	k: 887	n:2380000
Cons ci ratio: 1.076669e-02	ci left: 5.247431e-02	ci right 5.304275e-02	k: 125564	n:2380000
KS ci ratio: 7.901003e-02	ci left: 9.923640e-04	ci right 1.074404e-03	k: 2458	n:2380000
SPEG   2380000 perm   2710 sec   (878 perm/sec)   p_kst 1.032773e-03   p_cons 5.275798e-02   p_joint 3.726891e-04

Joint ci ratio: 1.311533e-01	ci left: 3.491321e-04	ci right 3.985352e-04	k: 892	n:2390000
Cons ci ratio: 1.074264e-02	ci left: 5.248885e-02	ci right 5.305617e-02	k: 126125	n:2390000
KS ci ratio: 7.894595e-02	ci left: 9.898524e-04	ci right 1.071615e-03	k: 2462	n:2390000
SPEG   2390000 perm   2730 sec   (876 perm/sec)   p_kst 1.030126e-03   p_cons 5.277197e-02   p_joint 3.732218e-04

Joint ci ratio: 1.307148e-01	ci left: 3.500955e-04	ci right 3.994564e-04	k: 898	n:2400000
Cons ci ratio: 1.071986e-02	ci left: 5.249288e-02	ci right 5.305903e-02	k: 126661	n:2400000
KS ci ratio: 7.867480e-02	ci left: 9.926718e-04	ci right 1.074373e-03	k: 2479	n:2400000
SPEG   2400000 perm   2750 sec   (873 perm/sec)   p_kst 1.032917e-03   p_cons 5.277542e-02   p_joint 3.741667e-04

Joint ci ratio: 1.304250e-01	ci left: 3.502484e-04	ci right 3.995129e-04	k: 902	n:2410000
Cons ci ratio: 1.069799e-02	ci left: 5.248984e-02	ci right 5.305480e-02	k: 127180	n:2410000
KS ci ratio: 7.848512e-02	ci left: 9.934343e-04	ci right 1.074992e-03	k: 2491	n:2410000
SPEG   2410000 perm   2770 sec   (870 perm/sec)   p_kst 1.033610e-03   p_cons 5.277178e-02   p_joint 3.742739e-04

Joint ci ratio: 1.302089e-01	ci left: 3.500003e-04	ci right 3.991421e-04	k: 905	n:2420000
Cons ci ratio: 1.067594e-02	ci left: 5.248972e-02	ci right 5.305350e-02	k: 127706	n:2420000
KS ci ratio: 7.828115e-02	ci left: 9.945958e-04	ci right 1.076027e-03	k: 2504	n:2420000
SPEG   2420000 perm   2790 sec   (868 perm/sec)   p_kst 1.034711e-03   p_cons 5.277107e-02   p_joint 3.739669e-04

Joint ci ratio: 1.298510e-01	ci left: 3.505507e-04	ci right 3.996240e-04	k: 910	n:2430000
Cons ci ratio: 1.065451e-02	ci left: 5.248508e-02	ci right 5.304768e-02	k: 128221	n:2430000
KS ci ratio: 7.807877e-02	ci left: 9.957480e-04	ci right 1.077054e-03	k: 2517	n:2430000
SPEG   2430000 perm   2810 sec   (865 perm/sec)   p_kst 1.035802e-03   p_cons 5.276584e-02   p_joint 3.744856e-04

Joint ci ratio: 1.367859e-01	ci left: 3.134577e-04	ci right 3.598728e-04	k: 820	n:2440000
Cons ci ratio: 1.063264e-02	ci left: 5.248579e-02	ci right 5.304724e-02	k: 128749	n:2440000
KS ci ratio: 7.793963e-02	ci left: 9.952837e-04	ci right 1.076400e-03	k: 2526	n:2440000
SPEG   2440000 perm   2830 sec   (862 perm/sec)   p_kst 1.035246e-03   p_cons 5.276598e-02   p_joint 3.360656e-04

Joint ci ratio: 1.366196e-01	ci left: 3.129667e-04	ci right 3.592482e-04	k: 822	n:2450000
Cons ci ratio: 1.061151e-02	ci left: 5.248080e-02	ci right 5.304107e-02	k: 129263	n:2450000
KS ci ratio: 7.775521e-02	ci left: 9.960239e-04	ci right 1.077000e-03	k: 2538	n:2450000
SPEG   2450000 perm   2851 sec   (859 perm/sec)   p_kst 1.035918e-03   p_cons 5.276041e-02   p_joint 3.355102e-04

Joint ci ratio: 1.364540e-01	ci left: 3.124797e-04	ci right 3.586286e-04	k: 824	n:2460000
Cons ci ratio: 1.058912e-02	ci left: 5.248883e-02	ci right 5.304800e-02	k: 129809	n:2460000
KS ci ratio: 7.760254e-02	ci left: 9.959611e-04	ci right 1.076766e-03	k: 2548	n:2460000
SPEG   2460000 perm   2871 sec   (857 perm/sec)   p_kst 1.035772e-03   p_cons 5.276789e-02   p_joint 3.349593e-04

Joint ci ratio: 1.366198e-01	ci left: 3.104325e-04	ci right 3.563393e-04	k: 822	n:2470000
Cons ci ratio: 1.056911e-02	ci left: 5.247579e-02	ci right 5.303376e-02	k: 130303	n:2470000
KS ci ratio: 7.754182e-02	ci left: 9.935169e-04	ci right 1.074057e-03	k: 2552	n:2470000
SPEG   2470000 perm   2892 sec   (854 perm/sec)   p_kst 1.033198e-03   p_cons 5.275425e-02   p_joint 3.327935e-04

Joint ci ratio: 1.365370e-01	ci left: 3.095702e-04	ci right 3.553195e-04	k: 823	n:2480000
Cons ci ratio: 1.054797e-02	ci left: 5.247453e-02	ci right 5.303136e-02	k: 130826	n:2480000
KS ci ratio: 7.752679e-02	ci left: 9.899061e-04	ci right 1.070137e-03	k: 2553	n:2480000
SPEG   2480000 perm   2912 sec   (852 perm/sec)   p_kst 1.029435e-03   p_cons 5.275242e-02   p_joint 3.318548e-04

Joint ci ratio: 1.362067e-01	ci left: 3.098786e-04	ci right 3.555537e-04	k: 827	n:2490000
Cons ci ratio: 1.052747e-02	ci left: 5.246847e-02	ci right 5.302414e-02	k: 131337	n:2490000
KS ci ratio: 7.731511e-02	ci left: 9.914442e-04	ci right 1.071571e-03	k: 2567	n:2490000
SPEG   2490000 perm   2933 sec   (849 perm/sec)   p_kst 1.030924e-03   p_cons 5.274578e-02   p_joint 3.321285e-04

Joint ci ratio: 1.361246e-01	ci left: 3.090254e-04	ci right 3.545451e-04	k: 828	n:2500000
Cons ci ratio: 1.050587e-02	ci left: 5.247403e-02	ci right 5.302861e-02	k: 131877	n:2500000
KS ci ratio: 7.712012e-02	ci left: 9.925781e-04	ci right 1.072585e-03	k: 2580	n:2500000
SPEG   2500000 perm   2953 sec   (846 perm/sec)   p_kst 1.032000e-03   p_cons 5.275080e-02   p_joint 3.312000e-04

Joint ci ratio: 1.357974e-01	ci left: 3.093337e-04	ci right 3.547804e-04	k: 832	n:2510000
Cons ci ratio: 1.048632e-02	ci left: 5.246126e-02	ci right 5.301467e-02	k: 132371	n:2510000
KS ci ratio: 7.694143e-02	ci left: 9.933124e-04	ci right 1.073185e-03	k: 2592	n:2510000
SPEG   2510000 perm   2974 sec   (844 perm/sec)   p_kst 1.032669e-03   p_cons 5.273745e-02   p_joint 3.314741e-04

Joint ci ratio: 1.362894e-01	ci left: 3.058062e-04	ci right 3.509106e-04	k: 826	n:2520000
Cons ci ratio: 1.046605e-02	ci left: 5.245651e-02	ci right 5.300880e-02	k: 132885	n:2520000
KS ci ratio: 7.670506e-02	ci left: 9.955979e-04	ci right 1.075397e-03	k: 2608	n:2520000
SPEG   2520000 perm   2995 sec   (841 perm/sec)   p_kst 1.034921e-03   p_cons 5.273214e-02   p_joint 3.277778e-04

Joint ci ratio: 1.383118e-01	ci left: 2.954370e-04	ci right 3.397120e-04	k: 802	n:2530000
Cons ci ratio: 1.044465e-02	ci left: 5.246363e-02	ci right 5.301486e-02	k: 133429	n:2530000
KS ci ratio: 7.657312e-02	ci left: 9.951519e-04	ci right 1.074772e-03	k: 2617	n:2530000
SPEG   2530000 perm   3016 sec   (839 perm/sec)   p_kst 1.034387e-03   p_cons 5.273874e-02   p_joint 3.169960e-04

Joint ci ratio: 1.378832e-01	ci left: 2.961744e-04	ci right 3.404110e-04	k: 807	n:2540000
Cons ci ratio: 1.042265e-02	ci left: 5.247777e-02	ci right 5.302798e-02	k: 133991	n:2540000
KS ci ratio: 7.634011e-02	ci left: 9.974128e-04	ci right 1.076960e-03	k: 2633	n:2540000
SPEG   2540000 perm   3036 sec   (837 perm/sec)   p_kst 1.036614e-03   p_cons 5.275236e-02   p_joint 3.177165e-04

Joint ci ratio: 1.376279e-01	ci left: 2.961488e-04	ci right 3.402930e-04	k: 810	n:2550000
Cons ci ratio: 1.040328e-02	ci left: 5.246793e-02	ci right 5.301701e-02	k: 134492	n:2550000
KS ci ratio: 7.622448e-02	ci left: 9.965788e-04	ci right 1.075934e-03	k: 2641	n:2550000
SPEG   2550000 perm   3057 sec   (834 perm/sec)   p_kst 1.035686e-03   p_cons 5.274196e-02   p_joint 3.176471e-04

Joint ci ratio: 1.372055e-01	ci left: 2.968780e-04	ci right 3.409840e-04	k: 815	n:2560000
Cons ci ratio: 1.038247e-02	ci left: 5.247298e-02	ci right 5.302100e-02	k: 135031	n:2560000
KS ci ratio: 7.595174e-02	ci left: 9.999666e-04	ci right 1.079294e-03	k: 2660	n:2560000
SPEG   2560000 perm   3079 sec   (832 perm/sec)   p_kst 1.039063e-03   p_cons 5.274648e-02   p_joint 3.183594e-04

Joint ci ratio: 1.369540e-01	ci left: 2.968501e-04	ci right 3.408645e-04	k: 818	n:2570000
Cons ci ratio: 1.036130e-02	ci left: 5.248265e-02	ci right 5.302965e-02	k: 135582	n:2570000
KS ci ratio: 7.579523e-02	ci left: 1.000275e-03	ci right 1.079456e-03	k: 2671	n:2570000
SPEG   2570000 perm   3100 sec   (829 perm/sec)   p_kst 1.039300e-03   p_cons 5.275564e-02   p_joint 3.182879e-04

Joint ci ratio: 1.367039e-01	ci left: 2.968225e-04	ci right 3.407459e-04	k: 821	n:2580000
Cons ci ratio: 1.034199e-02	ci left: 5.247561e-02	ci right 5.302151e-02	k: 136090	n:2580000
KS ci ratio: 7.565380e-02	ci left: 1.000200e-03	ci right 1.079221e-03	k: 2681	n:2580000
SPEG   2580000 perm   3121 sec   (827 perm/sec)   p_kst 1.039147e-03   p_cons 5.274806e-02   p_joint 3.182171e-04

Joint ci ratio: 1.362900e-01	ci left: 2.975411e-04	ci right 3.414266e-04	k: 826	n:2590000
Cons ci ratio: 1.032146e-02	ci left: 5.248135e-02	ci right 5.302622e-02	k: 136631	n:2590000
KS ci ratio: 7.547107e-02	ci left: 1.001263e-03	ci right 1.080168e-03	k: 2694	n:2590000
SPEG   2590000 perm   3143 sec   (824 perm/sec)   p_kst 1.040154e-03   p_cons 5.275328e-02   p_joint 3.189189e-04

Joint ci ratio: 1.360434e-01	ci left: 2.975112e-04	ci right 3.413066e-04	k: 829	n:2600000
Cons ci ratio: 1.030209e-02	ci left: 5.247706e-02	ci right 5.302086e-02	k: 137146	n:2600000
KS ci ratio: 7.531751e-02	ci left: 1.001563e-03	ci right 1.080324e-03	k: 2705	n:2600000
SPEG   2600000 perm   3164 sec   (822 perm/sec)   p_kst 1.040385e-03   p_cons 5.274846e-02   p_joint 3.188462e-04

Joint ci ratio: 1.358799e-01	ci left: 2.971115e-04	ci right 3.407912e-04	k: 831	n:2610000
Cons ci ratio: 1.028090e-02	ci left: 5.249154e-02	ci right 5.303436e-02	k: 137710	n:2610000
KS ci ratio: 7.523421e-02	ci left: 9.999810e-04	ci right 1.078527e-03	k: 2711	n:2610000
SPEG   2610000 perm   3185 sec   (819 perm/sec)   p_kst 1.038697e-03   p_cons 5.276245e-02   p_joint 3.183908e-04

Joint ci ratio: 1.355544e-01	ci left: 2.974524e-04	ci right 3.410690e-04	k: 835	n:2620000
Cons ci ratio: 1.026117e-02	ci left: 5.249296e-02	ci right 5.303475e-02	k: 138240	n:2620000
KS ci ratio: 7.512353e-02	ci left: 9.991603e-04	ci right 1.077522e-03	k: 2719	n:2620000
SPEG   2620000 perm   3207 sec   (817 perm/sec)   p_kst 1.037786e-03   p_cons 5.276336e-02   p_joint 3.187023e-04

Joint ci ratio: 1.353118e-01	ci left: 2.974234e-04	ci right 3.409515e-04	k: 838	n:2630000
Cons ci ratio: 1.024276e-02	ci left: 5.248261e-02	ci right 5.302332e-02	k: 138739	n:2630000
KS ci ratio: 7.504087e-02	ci left: 9.975998e-04	ci right 1.075749e-03	k: 2725	n:2630000
SPEG   2630000 perm   3229 sec   (815 perm/sec)   p_kst 1.036122e-03   p_cons 5.275247e-02   p_joint 3.186312e-04

Joint ci ratio: 1.352313e-01	ci left: 2.966628e-04	ci right 3.400516e-04	k: 839	n:2640000
Cons ci ratio: 1.022417e-02	ci left: 5.247499e-02	ci right 5.301463e-02	k: 139245	n:2640000
KS ci ratio: 7.493104e-02	ci left: 9.967944e-04	ci right 1.074761e-03	k: 2733	n:2640000
SPEG   2640000 perm   3250 sec   (812 perm/sec)   p_kst 1.035227e-03   p_cons 5.274432e-02   p_joint 3.178030e-04

Joint ci ratio: 1.349105e-01	ci left: 2.970018e-04	ci right 3.403288e-04	k: 843	n:2650000
Cons ci ratio: 1.020530e-02	ci left: 5.247119e-02	ci right 5.300979e-02	k: 139761	n:2650000
KS ci ratio: 7.479438e-02	ci left: 9.967359e-04	ci right 1.074550e-03	k: 2743	n:2650000
SPEG   2650000 perm   3272 sec   (810 perm/sec)   p_kst 1.035094e-03   p_cons 5.274000e-02   p_joint 3.181132e-04

Joint ci ratio: 1.348307e-01	ci left: 2.962485e-04	ci right 3.394380e-04	k: 844	n:2660000
Cons ci ratio: 1.018539e-02	ci left: 5.247867e-02	ci right 5.301629e-02	k: 140307	n:2660000
KS ci ratio: 7.471280e-02	ci left: 9.952022e-04	ci right 1.072808e-03	k: 2749	n:2660000
SPEG   2660000 perm   3295 sec   (807 perm/sec)   p_kst 1.033459e-03   p_cons 5.274699e-02   p_joint 3.172932e-04

Joint ci ratio: 1.346714e-01	ci left: 2.958627e-04	ci right 3.389410e-04	k: 846	n:2670000
Cons ci ratio: 1.016716e-02	ci left: 5.247078e-02	ci right 5.300735e-02	k: 140812	n:2670000
KS ci ratio: 7.452330e-02	ci left: 9.966205e-04	ci right 1.074131e-03	k: 2763	n:2670000
SPEG   2670000 perm   3317 sec   (805 perm/sec)   p_kst 1.034831e-03   p_cons 5.273858e-02   p_joint 3.168539e-04

Joint ci ratio: 1.352316e-01	ci left: 2.922350e-04	ci right 3.349763e-04	k: 839	n:2680000
Cons ci ratio: 1.014864e-02	ci left: 5.246667e-02	ci right 5.300221e-02	k: 141327	n:2680000
KS ci ratio: 7.438886e-02	ci left: 9.965636e-04	ci right 1.073924e-03	k: 2773	n:2680000
SPEG   2680000 perm   3339 sec   (803 perm/sec)   p_kst 1.034701e-03   p_cons 5.273396e-02   p_joint 3.130597e-04

Joint ci ratio: 1.659296e-01	ci left: 1.902237e-04	ci right 2.249935e-04	k: 557	n:2690000
Cons ci ratio: 1.012939e-02	ci left: 5.247075e-02	ci right 5.300531e-02	k: 141864	n:2690000
KS ci ratio: 7.569780e-02	ci left: 9.582049e-04	ci right 1.033954e-03	k: 2678	n:2690000
SPEG   2690000 perm   3361 sec   (800 perm/sec)   p_kst 9.955390e-04   p_cons 5.273755e-02   p_joint 2.070632e-04

Joint ci ratio: 1.662279e-01	ci left: 1.888092e-04	ci right 2.233888e-04	k: 555	n:2700000
Cons ci ratio: 1.011056e-02	ci left: 5.247184e-02	ci right 5.300542e-02	k: 142393	n:2700000
KS ci ratio: 7.557098e-02	ci left: 9.579263e-04	ci right 1.033521e-03	k: 2687	n:2700000
SPEG   2700000 perm   3383 sec   (798 perm/sec)   p_kst 9.951852e-04   p_cons 5.273815e-02   p_joint 2.055556e-04

Joint ci ratio: 1.660786e-01	ci left: 1.884661e-04	ci right 2.229488e-04	k: 556	n:2710000
Cons ci ratio: 1.009201e-02	ci left: 5.247109e-02	ci right 5.300367e-02	k: 142917	n:2710000
KS ci ratio: 7.540283e-02	ci left: 9.587360e-04	ci right 1.034219e-03	k: 2699	n:2710000
SPEG   2710000 perm   3406 sec   (796 perm/sec)   p_kst 9.959410e-04   p_cons 5.273690e-02   p_joint 2.051661e-04

Joint ci ratio: 1.657813e-01	ci left: 1.884780e-04	ci right 2.228949e-04	k: 558	n:2720000
Cons ci ratio: 1.007331e-02	ci left: 5.247291e-02	ci right 5.300452e-02	k: 143448	n:2720000
KS ci ratio: 7.523580e-02	ci left: 9.595399e-04	ci right 1.034911e-03	k: 2711	n:2720000
SPEG   2720000 perm   3428 sec   (794 perm/sec)   p_kst 9.966912e-04   p_cons 5.273824e-02   p_joint 2.051471e-04

Joint ci ratio: 1.656332e-01	ci left: 1.881387e-04	ci right 2.224599e-04	k: 559	n:2730000
Cons ci ratio: 1.005482e-02	ci left: 5.247362e-02	ci right 5.300425e-02	k: 143976	n:2730000
KS ci ratio: 7.508367e-02	ci left: 9.599787e-04	ci right 1.035225e-03	k: 2722	n:2730000
SPEG   2730000 perm   3450 sec   (791 perm/sec)   p_kst 9.970696e-04   p_cons 5.273846e-02   p_joint 2.047619e-04

Joint ci ratio: 1.656333e-01	ci left: 1.874521e-04	ci right 2.216480e-04	k: 559	n:2740000
Cons ci ratio: 1.003577e-02	ci left: 5.248088e-02	ci right 5.301058e-02	k: 144522	n:2740000
KS ci ratio: 7.501489e-02	ci left: 9.582656e-04	ci right 1.033306e-03	k: 2727	n:2740000
SPEG   2740000 perm   3472 sec   (789 perm/sec)   p_kst 9.952555e-04   p_cons 5.274526e-02   p_joint 2.040146e-04

Joint ci ratio: 1.653383e-01	ci left: 1.874676e-04	ci right 2.215994e-04	k: 561	n:2750000
Cons ci ratio: 1.001716e-02	ci left: 5.248482e-02	ci right 5.301357e-02	k: 145059	n:2750000
KS ci ratio: 7.490517e-02	ci left: 9.576356e-04	ci right 1.032512e-03	k: 2735	n:2750000
SPEG   2750000 perm   3495 sec   (787 perm/sec)   p_kst 9.945455e-04   p_cons 5.274873e-02   p_joint 2.040000e-04

Joint ci ratio: 1.651914e-01	ci left: 1.871357e-04	ci right 2.211738e-04	k: 562	n:2760000
Cons ci ratio: 9.999958e-03	ci left: 5.247573e-02	ci right 5.300347e-02	k: 145560	n:2760000
KS ci ratio: 7.476866e-02	ci left: 9.577213e-04	ci right 1.032462e-03	k: 2745	n:2760000
SPEG   2760000 perm   3517 sec   (785 perm/sec)   p_kst 9.945652e-04   p_cons 5.273913e-02   p_joint 2.036232e-04

Joint ci ratio: 1.647530e-01	ci left: 1.874984e-04	ci right 2.215031e-04	k: 565	n:2770000
Cons ci ratio: 9.980392e-03	ci left: 5.249119e-02	ci right 5.301805e-02	k: 146129	n:2770000
KS ci ratio: 7.467358e-02	ci left: 9.567437e-04	ci right 1.031309e-03	k: 2752	n:2770000
SPEG   2770000 perm   3540 sec   (783 perm/sec)   p_kst 9.935018e-04   p_cons 5.275415e-02   p_joint 2.039711e-04

Joint ci ratio: 1.644627e-01	ci left: 1.875138e-04	ci right 2.214553e-04	k: 567	n:2780000
Cons ci ratio: 9.962911e-03	ci left: 5.248680e-02	ci right 5.301269e-02	k: 146643	n:2780000
KS ci ratio: 7.455183e-02	ci left: 9.564791e-04	ci right 1.030898e-03	k: 2761	n:2780000
SPEG   2780000 perm   3562 sec   (780 perm/sec)   p_kst 9.931655e-04   p_cons 5.274928e-02   p_joint 2.039568e-04

Joint ci ratio: 1.640301e-01	ci left: 1.878727e-04	ci right 2.217810e-04	k: 570	n:2790000
Cons ci ratio: 9.944630e-03	ci left: 5.249139e-02	ci right 5.301635e-02	k: 147182	n:2790000
KS ci ratio: 7.437696e-02	ci left: 9.576237e-04	ci right 1.031949e-03	k: 2774	n:2790000
SPEG   2790000 perm   3585 sec   (778 perm/sec)   p_kst 9.942652e-04   p_cons 5.275341e-02   p_joint 2.043011e-04

Joint ci ratio: 1.637436e-01	ci left: 1.878868e-04	ci right 2.217325e-04	k: 572	n:2800000
Cons ci ratio: 9.926910e-03	ci left: 5.249131e-02	ci right 5.301533e-02	k: 147708	n:2800000
KS ci ratio: 7.418999e-02	ci left: 9.591107e-04	ci right 1.033356e-03	k: 2788	n:2800000
SPEG   2800000 perm   3608 sec   (776 perm/sec)   p_kst 9.957143e-04   p_cons 5.275286e-02   p_joint 2.042857e-04

Joint ci ratio: 1.634585e-01	ci left: 1.879007e-04	ci right 2.216842e-04	k: 574	n:2810000
Cons ci ratio: 9.910379e-03	ci left: 5.248022e-02	ci right 5.300326e-02	k: 148203	n:2810000
KS ci ratio: 7.404411e-02	ci left: 9.595396e-04	ci right 1.033666e-03	k: 2799	n:2810000
SPEG   2810000 perm   3631 sec   (774 perm/sec)   p_kst 9.960854e-04   p_cons 5.274128e-02   p_joint 2.042705e-04

Joint ci ratio: 1.631750e-01	ci left: 1.879146e-04	ci right 2.216363e-04	k: 576	n:2820000
Cons ci ratio: 9.893684e-03	ci left: 5.247170e-02	ci right 5.299376e-02	k: 148705	n:2820000
KS ci ratio: 7.388592e-02	ci left: 9.603136e-04	ci right 1.034334e-03	k: 2811	n:2820000
SPEG   2820000 perm   3653 sec   (772 perm/sec)   p_kst 9.968085e-04   p_cons 5.273227e-02   p_joint 2.042553e-04

Joint ci ratio: 1.628929e-01	ci left: 1.879285e-04	ci right 2.215887e-04	k: 578	n:2830000
Cons ci ratio: 9.876794e-03	ci left: 5.246605e-02	ci right 5.298716e-02	k: 149215	n:2830000
KS ci ratio: 7.379417e-02	ci left: 9.593481e-04	ci right 1.033199e-03	k: 2818	n:2830000
SPEG   2830000 perm   3676 sec   (770 perm/sec)   p_kst 9.957597e-04   p_cons 5.272615e-02   p_joint 2.042403e-04

Joint ci ratio: 1.626123e-01	ci left: 1.879423e-04	ci right 2.215413e-04	k: 580	n:2840000
Cons ci ratio: 9.858669e-03	ci left: 5.247379e-02	ci right 5.299402e-02	k: 149763	n:2840000
KS ci ratio: 7.365060e-02	ci left: 9.597719e-04	ci right 1.033505e-03	k: 2829	n:2840000
SPEG   2840000 perm   3699 sec   (768 perm/sec)   p_kst 9.961268e-04   p_cons 5.273345e-02   p_joint 2.042254e-04

Joint ci ratio: 1.662288e-01	ci left: 1.788718e-04	ci right 2.116315e-04	k: 555	n:2850000
Cons ci ratio: 9.841232e-03	ci left: 5.247553e-02	ci right 5.299485e-02	k: 150294	n:2850000
KS ci ratio: 7.352082e-02	ci left: 9.598485e-04	ci right 1.033452e-03	k: 2839	n:2850000
SPEG   2850000 perm   3723 sec   (766 perm/sec)   p_kst 9.961404e-04   p_cons 5.273474e-02   p_joint 1.947368e-04

Joint ci ratio: 1.659306e-01	ci left: 1.789166e-04	ci right 2.116199e-04	k: 557	n:2860000
Cons ci ratio: 9.824230e-03	ci left: 5.247377e-02	ci right 5.299217e-02	k: 150815	n:2860000
KS ci ratio: 7.337883e-02	ci left: 9.602679e-04	ci right 1.033755e-03	k: 2850	n:2860000
SPEG   2860000 perm   3746 sec   (764 perm/sec)   p_kst 9.965035e-04   p_cons 5.273252e-02   p_joint 1.947552e-04

Joint ci ratio: 1.654863e-01	ci left: 1.792951e-04	ci right 2.119712e-04	k: 560	n:2870000
Cons ci ratio: 9.807556e-03	ci left: 5.246959e-02	ci right 5.298706e-02	k: 151329	n:2870000
KS ci ratio: 7.321207e-02	ci left: 9.613686e-04	ci right 1.034766e-03	k: 2863	n:2870000
SPEG   2870000 perm   3768 sec   (762 perm/sec)   p_kst 9.975610e-04   p_cons 5.272787e-02   p_joint 1.951220e-04

Joint ci ratio: 1.656341e-01	ci left: 1.783397e-04	ci right 2.108736e-04	k: 559	n:2880000
Cons ci ratio: 9.791170e-03	ci left: 5.246336e-02	ci right 5.297990e-02	k: 151837	n:2880000
KS ci ratio: 7.307186e-02	ci left: 9.617802e-04	ci right 1.035062e-03	k: 2874	n:2880000
SPEG   2880000 perm   3792 sec   (760 perm/sec)   p_kst 9.979167e-04   p_cons 5.272118e-02   p_joint 1.940972e-04

Joint ci ratio: 1.653391e-01	ci left: 1.783860e-04	ci right 2.108646e-04	k: 561	n:2890000
Cons ci ratio: 9.774697e-03	ci left: 5.245890e-02	ci right 5.297452e-02	k: 152350	n:2890000
KS ci ratio: 7.291982e-02	ci left: 9.625287e-04	ci right 1.035709e-03	k: 2886	n:2890000
SPEG   2890000 perm   3816 sec   (757 perm/sec)   p_kst 9.986159e-04   p_cons 5.271626e-02   p_joint 1.941176e-04

Joint ci ratio: 1.650457e-01	ci left: 1.784321e-04	ci right 2.108556e-04	k: 563	n:2900000
Cons ci ratio: 9.758374e-03	ci left: 5.245378e-02	ci right 5.296849e-02	k: 152861	n:2900000
KS ci ratio: 7.281902e-02	ci left: 9.619180e-04	ci right 1.034946e-03	k: 2894	n:2900000
SPEG   2900000 perm   3839 sec   (755 perm/sec)   p_kst 9.979310e-04   p_cons 5.271069e-02   p_joint 1.941379e-04

Joint ci ratio: 1.647538e-01	ci left: 1.784778e-04	ci right 2.108466e-04	k: 565	n:2910000
Cons ci ratio: 9.740826e-03	ci left: 5.246207e-02	ci right 5.297593e-02	k: 153411	n:2910000
KS ci ratio: 7.270610e-02	ci left: 9.616489e-04	ci right 1.034539e-03	k: 2903	n:2910000
SPEG   2910000 perm   3862 sec   (753 perm/sec)   p_kst 9.975945e-04   p_cons 5.271856e-02   p_joint 1.941581e-04

Joint ci ratio: 1.646085e-01	ci left: 1.781949e-04	ci right 2.104811e-04	k: 566	n:2920000
Cons ci ratio: 9.724638e-03	ci left: 5.245732e-02	ci right 5.297028e-02	k: 153923	n:2920000
KS ci ratio: 7.260619e-02	ci left: 9.610455e-04	ci right 1.033786e-03	k: 2911	n:2920000
SPEG   2920000 perm   3886 sec   (751 perm/sec)   p_kst 9.969178e-04   p_cons 5.271336e-02   p_joint 1.938356e-04

Joint ci ratio: 1.643190e-01	ci left: 1.782413e-04	ci right 2.104734e-04	k: 568	n:2930000
Cons ci ratio: 9.708266e-03	ci left: 5.245533e-02	ci right 5.296740e-02	k: 154443	n:2930000
KS ci ratio: 7.255645e-02	ci left: 9.591059e-04	ci right 1.031647e-03	k: 2915	n:2930000
SPEG   2930000 perm   3910 sec   (749 perm/sec)   p_kst 9.948805e-04   p_cons 5.271092e-02   p_joint 1.938567e-04

Joint ci ratio: 1.641748e-01	ci left: 1.779612e-04	ci right 2.101116e-04	k: 569	n:2940000
Cons ci ratio: 9.692141e-03	ci left: 5.245166e-02	ci right 5.296283e-02	k: 154958	n:2940000
KS ci ratio: 7.244475e-02	ci left: 9.588493e-04	ci right 1.031255e-03	k: 2924	n:2940000
SPEG   2940000 perm   3934 sec   (747 perm/sec)   p_kst 9.945578e-04   p_cons 5.270680e-02   p_joint 1.935374e-04

Joint ci ratio: 1.637444e-01	ci left: 1.783331e-04	ci right 2.104580e-04	k: 572	n:2950000
Cons ci ratio: 9.676622e-03	ci left: 5.244260e-02	ci right 5.295286e-02	k: 155457	n:2950000
KS ci ratio: 7.234591e-02	ci left: 9.582618e-04	ci right 1.030520e-03	k: 2932	n:2950000
SPEG   2950000 perm   3958 sec   (745 perm/sec)   p_kst 9.938983e-04   p_cons 5.269729e-02   p_joint 1.938983e-04

Joint ci ratio: 1.636017e-01	ci left: 1.780546e-04	ci right 2.100987e-04	k: 573	n:2960000
Cons ci ratio: 9.660719e-03	ci left: 5.243832e-02	ci right 5.294769e-02	k: 155970	n:2960000
KS ci ratio: 7.227207e-02	ci left: 9.570147e-04	ci right 1.029102e-03	k: 2938	n:2960000
SPEG   2960000 perm   3982 sec   (743 perm/sec)   p_kst 9.925676e-04   p_cons 5.269257e-02   p_joint 1.935811e-04

Joint ci ratio: 1.636018e-01	ci left: 1.774551e-04	ci right 2.093913e-04	k: 573	n:2970000
Cons ci ratio: 9.644017e-03	ci left: 5.244314e-02	ci right 5.295168e-02	k: 156510	n:2970000
KS ci ratio: 7.217393e-02	ci left: 9.564374e-04	ci right 1.028380e-03	k: 2946	n:2970000
SPEG   2970000 perm   4006 sec   (741 perm/sec)   p_kst 9.919192e-04   p_cons 5.269697e-02   p_joint 1.929293e-04

Joint ci ratio: 1.633175e-01	ci left: 1.775033e-04	ci right 2.093872e-04	k: 575	n:2980000
Cons ci ratio: 9.626818e-03	ci left: 5.245395e-02	ci right 5.296168e-02	k: 157068	n:2980000
KS ci ratio: 7.197873e-02	ci left: 9.585003e-04	ci right 1.030394e-03	k: 2962	n:2980000
SPEG   2980000 perm   4030 sec   (739 perm/sec)   p_kst 9.939597e-04   p_cons 5.270738e-02   p_joint 1.929530e-04

Joint ci ratio: 1.630347e-01	ci left: 1.775513e-04	ci right 2.093831e-04	k: 577	n:2990000
Cons ci ratio: 9.610419e-03	ci left: 5.245735e-02	ci right 5.296425e-02	k: 157604	n:2990000
KS ci ratio: 7.185757e-02	ci left: 9.585790e-04	ci right 1.030353e-03	k: 2972	n:2990000
SPEG   2990000 perm   4054 sec   (738 perm/sec)   p_kst 9.939799e-04   p_cons 5.271037e-02   p_joint 1.929766e-04

Joint ci ratio: 1.628939e-01	ci left: 1.772792e-04	ci right 2.090321e-04	k: 578	n:3000000
Cons ci ratio: 9.594392e-03	ci left: 5.245774e-02	ci right 5.296379e-02	k: 158131	n:3000000
KS ci ratio: 7.177316e-02	ci left: 9.576751e-04	ci right 1.029294e-03	k: 2979	n:3000000
SPEG   3000000 perm   4079 sec   (736 perm/sec)   p_kst 9.930000e-04   p_cons 5.271033e-02   p_joint 1.926667e-04

Joint ci ratio: 1.630348e-01	ci left: 1.763715e-04	ci right 2.079919e-04	k: 577	n:3010000
Cons ci ratio: 9.580197e-03	ci left: 5.243989e-02	ci right 5.294502e-02	k: 158603	n:3010000
KS ci ratio: 7.162906e-02	ci left: 9.584087e-04	ci right 1.029932e-03	k: 2991	n:3010000
SPEG   3010000 perm   4103 sec   (734 perm/sec)   p_kst 9.936877e-04   p_cons 5.269203e-02   p_joint 1.916944e-04

Joint ci ratio: 1.628940e-01	ci left: 1.761051e-04	ci right 2.076478e-04	k: 578	n:3020000
Cons ci ratio: 9.564067e-03	ci left: 5.244298e-02	ci right 5.294728e-02	k: 159138	n:3020000
KS ci ratio: 7.152158e-02	ci left: 9.581620e-04	ci right 1.029555e-03	k: 3000	n:3020000
SPEG   3020000 perm   4128 sec   (732 perm/sec)   p_kst 9.933775e-04   p_cons 5.269470e-02   p_joint 1.913907e-04

Joint ci ratio: 1.627535e-01	ci left: 1.758405e-04	ci right 2.073059e-04	k: 579	n:3030000
Cons ci ratio: 9.547828e-03	ci left: 5.244802e-02	ci right 5.295151e-02	k: 159679	n:3030000
KS ci ratio: 7.145024e-02	ci left: 9.569445e-04	ci right 1.028173e-03	k: 3006	n:3030000
SPEG   3030000 perm   4152 sec   (730 perm/sec)   p_kst 9.920792e-04   p_cons 5.269934e-02   p_joint 1.910891e-04

Joint ci ratio: 1.631762e-01	ci left: 1.743155e-04	ci right 2.055970e-04	k: 576	n:3040000
Cons ci ratio: 9.532520e-03	ci left: 5.244417e-02	ci right 5.294681e-02	k: 160193	n:3040000
KS ci ratio: 7.131990e-02	ci left: 9.573505e-04	ci right 1.028474e-03	k: 3017	n:3040000
SPEG   3040000 perm   4177 sec   (728 perm/sec)   p_kst 9.924342e-04   p_cons 5.269507e-02   p_joint 1.894737e-04

Joint ci ratio: 1.627536e-01	ci left: 1.746874e-04	ci right 2.059466e-04	k: 579	n:3050000
Cons ci ratio: 9.516691e-03	ci left: 5.244656e-02	ci right 5.294839e-02	k: 160726	n:3050000
KS ci ratio: 7.117850e-02	ci left: 9.580760e-04	ci right 1.029106e-03	k: 3029	n:3050000
SPEG   3050000 perm   4201 sec   (726 perm/sec)   p_kst 9.931148e-04   p_cons 5.269705e-02   p_joint 1.898361e-04

Joint ci ratio: 1.624737e-01	ci left: 1.747436e-04	ci right 2.059537e-04	k: 581	n:3060000
Cons ci ratio: 9.501283e-03	ci left: 5.244535e-02	ci right 5.294635e-02	k: 161248	n:3060000
KS ci ratio: 7.100291e-02	ci left: 9.597599e-04	ci right 1.030732e-03	k: 3044	n:3060000
SPEG   3060000 perm   4226 sec   (724 perm/sec)   p_kst 9.947712e-04   p_cons 5.269542e-02   p_joint 1.898693e-04

Joint ci ratio: 1.630351e-01	ci left: 1.729245e-04	ci right 2.039269e-04	k: 577	n:3070000
Cons ci ratio: 9.485732e-03	ci left: 5.244642e-02	ci right 5.294660e-02	k: 161777	n:3070000
KS ci ratio: 7.079388e-02	ci left: 9.623929e-04	ci right 1.033342e-03	k: 3062	n:3070000
SPEG   3070000 perm   4251 sec   (722 perm/sec)   p_kst 9.973941e-04   p_cons 5.269609e-02   p_joint 1.879479e-04

Joint ci ratio: 1.630352e-01	ci left: 1.723630e-04	ci right 2.032648e-04	k: 577	n:3080000
Cons ci ratio: 9.469919e-03	ci left: 5.245105e-02	ci right 5.295044e-02	k: 162317	n:3080000
KS ci ratio: 7.074777e-02	ci left: 9.605439e-04	ci right 1.031309e-03	k: 3066	n:3080000
SPEG   3080000 perm   4275 sec   (720 perm/sec)   p_kst 9.954545e-04   p_cons 5.270032e-02   p_joint 1.873377e-04

Joint ci ratio: 1.646094e-01	ci left: 1.683913e-04	ci right 1.989014e-04	k: 566	n:3090000
Cons ci ratio: 9.454308e-03	ci left: 5.245436e-02	ci right 5.295295e-02	k: 162853	n:3090000
KS ci ratio: 7.067872e-02	ci left: 9.593428e-04	ci right 1.029947e-03	k: 3072	n:3090000
SPEG   3090000 perm   4300 sec   (719 perm/sec)   p_kst 9.941748e-04   p_cons 5.270324e-02   p_joint 1.831715e-04

Joint ci ratio: 1.646094e-01	ci left: 1.678481e-04	ci right 1.982597e-04	k: 566	n:3100000
Cons ci ratio: 9.438987e-03	ci left: 5.245540e-02	ci right 5.295318e-02	k: 163382	n:3100000
KS ci ratio: 7.049536e-02	ci left: 9.613184e-04	ci right 1.031877e-03	k: 3088	n:3100000
SPEG   3100000 perm   4325 sec   (717 perm/sec)   p_kst 9.961290e-04   p_cons 5.270387e-02   p_joint 1.825806e-04

Joint ci ratio: 1.644645e-01	ci left: 1.676167e-04	ci right 1.979570e-04	k: 567	n:3110000
Cons ci ratio: 9.424438e-03	ci left: 5.244905e-02	ci right 5.294600e-02	k: 163888	n:3110000
KS ci ratio: 7.038153e-02	ci left: 9.613861e-04	ci right 1.031831e-03	k: 3098	n:3110000
SPEG   3110000 perm   4351 sec   (715 perm/sec)   p_kst 9.961415e-04   p_cons 5.269711e-02   p_joint 1.823151e-04

Joint ci ratio: 1.641757e-01	ci left: 1.676941e-04	ci right 1.979899e-04	k: 569	n:3120000
Cons ci ratio: 9.409261e-03	ci left: 5.245009e-02	ci right 5.294625e-02	k: 164417	n:3120000
KS ci ratio: 7.026825e-02	ci left: 9.614535e-04	ci right 1.031786e-03	k: 3108	n:3120000
SPEG   3120000 perm   4376 sec   (713 perm/sec)   p_kst 9.961538e-04   p_cons 5.269776e-02   p_joint 1.823718e-04

Joint ci ratio: 1.646096e-01	ci left: 1.662393e-04	ci right 1.963595e-04	k: 566	n:3130000
Cons ci ratio: 9.395150e-03	ci left: 5.244061e-02	ci right 5.293593e-02	k: 164913	n:3130000
KS ci ratio: 7.015552e-02	ci left: 9.615206e-04	ci right 1.031740e-03	k: 3118	n:3130000
SPEG   3130000 perm   4402 sec   (711 perm/sec)   p_kst 9.961661e-04   p_cons 5.268786e-02   p_joint 1.808307e-04

Joint ci ratio: 1.644646e-01	ci left: 1.660152e-04	ci right 1.960657e-04	k: 567	n:3140000
Cons ci ratio: 9.380922e-03	ci left: 5.243310e-02	ci right 5.292760e-02	k: 165415	n:3140000
KS ci ratio: 7.006574e-02	ci left: 9.609615e-04	ci right 1.031047e-03	k: 3126	n:3140000
SPEG   3140000 perm   4427 sec   (709 perm/sec)   p_kst 9.955414e-04   p_cons 5.267994e-02   p_joint 1.805732e-04

Joint ci ratio: 1.641758e-01	ci left: 1.660970e-04	ci right 1.961043e-04	k: 569	n:3150000
Cons ci ratio: 9.366223e-03	ci left: 5.243134e-02	ci right 5.292504e-02	k: 165935	n:3150000
KS ci ratio: 6.997630e-02	ci left: 9.604060e-04	ci right 1.030358e-03	k: 3134	n:3150000
SPEG   3150000 perm   4452 sec   (707 perm/sec)   p_kst 9.949206e-04   p_cons 5.267778e-02   p_joint 1.806349e-04

Joint ci ratio: 1.641759e-01	ci left: 1.655714e-04	ci right 1.954837e-04	k: 569	n:3160000
Cons ci ratio: 9.351059e-03	ci left: 5.243527e-02	ci right 5.292821e-02	k: 166473	n:3160000
KS ci ratio: 6.990948e-02	ci left: 9.592323e-04	ci right 1.029029e-03	k: 3140	n:3160000
SPEG   3160000 perm   4478 sec   (706 perm/sec)   p_kst 9.936709e-04   p_cons 5.268133e-02   p_joint 1.800633e-04

Joint ci ratio: 1.640321e-01	ci left: 1.653516e-04	ci right 1.951955e-04	k: 570	n:3170000
Cons ci ratio: 9.335997e-03	ci left: 5.243887e-02	ci right 5.293104e-02	k: 167010	n:3170000
KS ci ratio: 6.985396e-02	ci left: 9.577560e-04	ci right 1.027388e-03	k: 3145	n:3170000
SPEG   3170000 perm   4503 sec   (704 perm/sec)   p_kst 9.921136e-04   p_cons 5.268454e-02   p_joint 1.798107e-04

Joint ci ratio: 1.646098e-01	ci left: 1.636254e-04	ci right 1.932721e-04	k: 566	n:3180000
Cons ci ratio: 9.321478e-03	ci left: 5.243742e-02	ci right 5.292881e-02	k: 167531	n:3180000
KS ci ratio: 6.979857e-02	ci left: 9.562890e-04	ci right 1.025757e-03	k: 3150	n:3180000
SPEG   3180000 perm   4529 sec   (702 perm/sec)   p_kst 9.905660e-04   p_cons 5.268270e-02   p_joint 1.779874e-04

Joint ci ratio: 1.646099e-01	ci left: 1.631125e-04	ci right 1.926662e-04	k: 566	n:3190000
Cons ci ratio: 9.307348e-03	ci left: 5.243254e-02	ci right 5.292313e-02	k: 168041	n:3190000
KS ci ratio: 6.968808e-02	ci left: 9.563714e-04	ci right 1.025731e-03	k: 3160	n:3190000
SPEG   3190000 perm   4555 sec   (700 perm/sec)   p_kst 9.905956e-04   p_cons 5.267743e-02   p_joint 1.774295e-04

Joint ci ratio: 1.640322e-01	ci left: 1.638014e-04	ci right 1.933655e-04	k: 570	n:3200000
Cons ci ratio: 9.292875e-03	ci left: 5.243206e-02	ci right 5.292188e-02	k: 168565	n:3200000
KS ci ratio: 6.958909e-02	ci left: 9.561463e-04	ci right 1.025387e-03	k: 3169	n:3200000
SPEG   3200000 perm   4581 sec   (699 perm/sec)   p_kst 9.903125e-04   p_cons 5.267656e-02   p_joint 1.781250e-04

Joint ci ratio: 1.638888e-01	ci left: 1.635898e-04	ci right 1.930874e-04	k: 571	n:3210000
Cons ci ratio: 9.277832e-03	ci left: 5.243842e-02	ci right 5.292750e-02	k: 169111	n:3210000
KS ci ratio: 6.949052e-02	ci left: 9.559226e-04	ci right 1.025045e-03	k: 3178	n:3210000
SPEG   3210000 perm   4606 sec   (697 perm/sec)   p_kst 9.900312e-04   p_cons 5.268255e-02   p_joint 1.778816e-04

Joint ci ratio: 1.637458e-01	ci left: 1.633796e-04	ci right 1.928111e-04	k: 572	n:3220000
Cons ci ratio: 9.264504e-03	ci left: 5.242707e-02	ci right 5.291535e-02	k: 169600	n:3220000
KS ci ratio: 6.942508e-02	ci left: 9.547849e-04	ci right 1.023757e-03	k: 3184	n:3220000
SPEG   3220000 perm   4632 sec   (695 perm/sec)   p_kst 9.888199e-04   p_cons 5.267081e-02   p_joint 1.776398e-04

Joint ci ratio: 1.633187e-01	ci left: 1.637646e-04	ci right 1.931809e-04	k: 575	n:3230000
Cons ci ratio: 9.249312e-03	ci left: 5.243650e-02	ci right 5.292405e-02	k: 170156	n:3230000
KS ci ratio: 6.926212e-02	ci left: 9.563923e-04	ci right 1.025312e-03	k: 3199	n:3230000
SPEG   3230000 perm   4658 sec   (693 perm/sec)   p_kst 9.904025e-04   p_cons 5.267988e-02   p_joint 1.780186e-04

Joint ci ratio: 1.630359e-01	ci left: 1.638512e-04	ci right 1.932271e-04	k: 577	n:3240000
Cons ci ratio: 9.234393e-03	ci left: 5.244371e-02	ci right 5.293054e-02	k: 170705	n:3240000
KS ci ratio: 6.915415e-02	ci left: 9.564735e-04	ci right 1.025288e-03	k: 3209	n:3240000
SPEG   3240000 perm   4684 sec   (692 perm/sec)   p_kst 9.904321e-04   p_cons 5.268673e-02   p_joint 1.780864e-04

Joint ci ratio: 1.627546e-01	ci left: 1.639374e-04	ci right 1.932730e-04	k: 579	n:3250000
Cons ci ratio: 9.220598e-03	ci left: 5.243952e-02	ci right 5.292558e-02	k: 171217	n:3250000
KS ci ratio: 6.905742e-02	ci left: 9.562519e-04	ci right 1.024950e-03	k: 3218	n:3250000
SPEG   3250000 perm   4710 sec   (690 perm/sec)   p_kst 9.901538e-04   p_cons 5.268215e-02   p_joint 1.781538e-04

Joint ci ratio: 1.621962e-01	ci left: 1.646116e-04	ci right 1.939570e-04	k: 583	n:3260000
Cons ci ratio: 9.206978e-03	ci left: 5.243413e-02	ci right 5.291942e-02	k: 171725	n:3260000
KS ci ratio: 6.896109e-02	ci left: 9.560317e-04	ci right 1.024614e-03	k: 3227	n:3260000
SPEG   3260000 perm   4737 sec   (688 perm/sec)   p_kst 9.898773e-04   p_cons 5.267638e-02   p_joint 1.788344e-04

Joint ci ratio: 1.617812e-01	ci left: 1.649884e-04	ci right 1.943184e-04	k: 586	n:3270000
Cons ci ratio: 9.193192e-03	ci left: 5.243122e-02	ci right 5.291575e-02	k: 172241	n:3270000
KS ci ratio: 6.884388e-02	ci left: 9.564140e-04	ci right 1.024903e-03	k: 3238	n:3270000
SPEG   3270000 perm   4763 sec   (686 perm/sec)   p_kst 9.902141e-04   p_cons 5.267309e-02   p_joint 1.792049e-04

Joint ci ratio: 1.616436e-01	ci left: 1.647780e-04	ci right 1.940432e-04	k: 587	n:3280000
Cons ci ratio: 9.179889e-03	ci left: 5.242376e-02	ci right 5.290752e-02	k: 172742	n:3280000
KS ci ratio: 6.875904e-02	ci left: 9.558952e-04	ci right 1.024259e-03	k: 3246	n:3280000
SPEG   3280000 perm   4790 sec   (685 perm/sec)   p_kst 9.896341e-04   p_cons 5.266524e-02   p_joint 1.789634e-04

Joint ci ratio: 1.612327e-01	ci left: 1.651521e-04	ci right 1.944021e-04	k: 590	n:3290000
Cons ci ratio: 9.167286e-03	ci left: 5.240937e-02	ci right 5.289233e-02	k: 173220	n:3290000
KS ci ratio: 6.863231e-02	ci left: 9.565745e-04	ci right 1.024856e-03	k: 3258	n:3290000
SPEG   3290000 perm   4817 sec   (683 perm/sec)   p_kst 9.902736e-04   p_cons 5.265046e-02   p_joint 1.793313e-04

Joint ci ratio: 1.612328e-01	ci left: 1.646517e-04	ci right 1.938130e-04	k: 590	n:3300000
Cons ci ratio: 9.153901e-03	ci left: 5.240414e-02	ci right 5.288634e-02	k: 173728	n:3300000
KS ci ratio: 6.854825e-02	ci left: 9.560585e-04	ci right 1.024216e-03	k: 3266	n:3300000
SPEG   3300000 perm   4843 sec   (681 perm/sec)   p_kst 9.896970e-04   p_cons 5.264485e-02   p_joint 1.787879e-04

Joint ci ratio: 1.610966e-01	ci left: 1.644442e-04	ci right 1.935417e-04	k: 591	n:3310000
Cons ci ratio: 9.140186e-03	ci left: 5.240316e-02	ci right 5.288463e-02	k: 174250	n:3310000
KS ci ratio: 6.846449e-02	ci left: 9.555456e-04	ci right 1.023580e-03	k: 3274	n:3310000
SPEG   3310000 perm   4869 sec   (680 perm/sec)   p_kst 9.891239e-04   p_cons 5.264350e-02   p_joint 1.785498e-04

Joint ci ratio: 1.605550e-01	ci left: 1.651052e-04	ci right 1.942120e-04	k: 595	n:3320000
Cons ci ratio: 9.126367e-03	ci left: 5.240400e-02	ci right 5.288474e-02	k: 174778	n:3320000
KS ci ratio: 6.834979e-02	ci left: 9.559240e-04	ci right 1.023867e-03	k: 3285	n:3320000
SPEG   3320000 perm   4896 sec   (678 perm/sec)   p_kst 9.894578e-04   p_cons 5.264398e-02   p_joint 1.792169e-04

Joint ci ratio: 1.604205e-01	ci left: 1.648976e-04	ci right 1.939412e-04	k: 596	n:3330000
Cons ci ratio: 9.112007e-03	ci left: 5.241142e-02	ci right 5.289147e-02	k: 175328	n:3330000
KS ci ratio: 6.825639e-02	ci left: 9.557099e-04	ci right 1.023541e-03	k: 3294	n:3330000
SPEG   3330000 perm   4923 sec   (676 perm/sec)   p_kst 9.891892e-04   p_cons 5.265105e-02   p_joint 1.789790e-04

Joint ci ratio: 1.604206e-01	ci left: 1.644039e-04	ci right 1.933605e-04	k: 596	n:3340000
Cons ci ratio: 9.098343e-03	ci left: 5.241192e-02	ci right 5.289125e-02	k: 175855	n:3340000
KS ci ratio: 6.821506e-02	ci left: 9.540256e-04	ci right 1.021695e-03	k: 3298	n:3340000
SPEG   3340000 perm   4949 sec   (675 perm/sec)   p_kst 9.874251e-04   p_cons 5.265120e-02   p_joint 1.784431e-04

Joint ci ratio: 1.600190e-01	ci left: 1.647728e-04	ci right 1.937147e-04	k: 599	n:3350000
Cons ci ratio: 9.084794e-03	ci left: 5.241183e-02	ci right 5.289044e-02	k: 176380	n:3350000
KS ci ratio: 6.806045e-02	ci left: 9.555792e-04	ci right 1.023199e-03	k: 3313	n:3350000
SPEG   3350000 perm   4976 sec   (673 perm/sec)   p_kst 9.889552e-04   p_cons 5.265075e-02   p_joint 1.788060e-04

Joint ci ratio: 1.597529e-01	ci left: 1.648538e-04	ci right 1.937572e-04	k: 601	n:3360000
Cons ci ratio: 9.071496e-03	ci left: 5.240966e-02	ci right 5.288754e-02	k: 176898	n:3360000
KS ci ratio: 6.802974e-02	ci left: 9.536128e-04	ci right 1.021061e-03	k: 3316	n:3360000
SPEG   3360000 perm   5003 sec   (672 perm/sec)   p_kst 9.869048e-04   p_cons 5.264821e-02   p_joint 1.788690e-04

Joint ci ratio: 1.610968e-01	ci left: 1.615164e-04	ci right 1.900959e-04	k: 591	n:3370000
Cons ci ratio: 9.058417e-03	ci left: 5.240572e-02	ci right 5.288288e-02	k: 177410	n:3370000
KS ci ratio: 6.792742e-02	ci left: 9.537000e-04	ci right 1.021049e-03	k: 3326	n:3370000
SPEG   3370000 perm   5030 sec   (670 perm/sec)   p_kst 9.869436e-04   p_cons 5.264392e-02   p_joint 1.753709e-04

Joint ci ratio: 1.606902e-01	ci left: 1.618903e-04	ci right 1.904568e-04	k: 594	n:3380000
Cons ci ratio: 9.044965e-03	ci left: 5.240653e-02	ci right 5.288299e-02	k: 177938	n:3380000
KS ci ratio: 6.772406e-02	ci left: 9.566953e-04	ci right 1.024046e-03	k: 3346	n:3380000
SPEG   3380000 perm   5056 sec   (669 perm/sec)   p_kst 9.899408e-04   p_cons 5.264438e-02   p_joint 1.757396e-04

Joint ci ratio: 1.602866e-01	ci left: 1.622622e-04	ci right 1.908154e-04	k: 597	n:3390000
Cons ci ratio: 9.030024e-03	ci left: 5.242442e-02	ci right 5.290024e-02	k: 178524	n:3390000
KS ci ratio: 6.758283e-02	ci left: 9.579331e-04	ci right 1.025225e-03	k: 3360	n:3390000
SPEG   3390000 perm   5083 sec   (667 perm/sec)   p_kst 9.911504e-04   p_cons 5.266195e-02   p_joint 1.761062e-04

Joint ci ratio: 1.601527e-01	ci left: 1.620673e-04	ci right 1.905601e-04	k: 598	n:3400000
Cons ci ratio: 9.015768e-03	ci left: 5.243544e-02	ci right 5.291061e-02	k: 179087	n:3400000
KS ci ratio: 6.743247e-02	ci left: 9.594530e-04	ci right 1.026696e-03	k: 3375	n:3400000
SPEG   3400000 perm   5111 sec   (665 perm/sec)   p_kst 9.926471e-04   p_cons 5.267265e-02   p_joint 1.758824e-04

Joint ci ratio: 1.598860e-01	ci left: 1.621550e-04	ci right 1.906113e-04	k: 600	n:3410000
Cons ci ratio: 9.002611e-03	ci left: 5.243499e-02	ci right 5.290946e-02	k: 179611	n:3410000
KS ci ratio: 6.730298e-02	ci left: 9.603875e-04	ci right 1.027561e-03	k: 3388	n:3410000
SPEG   3410000 perm   5137 sec   (664 perm/sec)   p_kst 9.935484e-04   p_cons 5.267185e-02   p_joint 1.759531e-04

Joint ci ratio: 1.594884e-01	ci left: 1.625230e-04	ci right 1.909661e-04	k: 603	n:3420000
Cons ci ratio: 8.988879e-03	ci left: 5.244155e-02	ci right 5.291535e-02	k: 180159	n:3420000
KS ci ratio: 6.716436e-02	ci left: 9.616041e-04	ci right 1.028719e-03	k: 3402	n:3420000
SPEG   3420000 perm   5165 sec   (662 perm/sec)   p_kst 9.947368e-04   p_cons 5.267807e-02   p_joint 1.763158e-04

Joint ci ratio: 1.593566e-01	ci left: 1.623291e-04	ci right 1.907125e-04	k: 604	n:3430000
Cons ci ratio: 8.974948e-03	ci left: 5.245098e-02	ci right 5.292412e-02	k: 180717	n:3430000
KS ci ratio: 6.710526e-02	ci left: 9.605205e-04	ci right 1.027499e-03	k: 3408	n:3430000
SPEG   3430000 perm   5192 sec   (661 perm/sec)   p_kst 9.935860e-04   p_cons 5.268717e-02   p_joint 1.760933e-04

Joint ci ratio: 1.592251e-01	ci left: 1.621363e-04	ci right 1.904604e-04	k: 605	n:3440000
Cons ci ratio: 8.961969e-03	ci left: 5.245049e-02	ci right 5.292294e-02	k: 181241	n:3440000
KS ci ratio: 6.705615e-02	ci left: 9.591573e-04	ci right 1.025990e-03	k: 3413	n:3440000
SPEG   3440000 perm   5220 sec   (659 perm/sec)   p_kst 9.921512e-04   p_cons 5.268634e-02   p_joint 1.758721e-04

Joint ci ratio: 1.656368e-01	ci left: 1.488747e-04	ci right 1.760338e-04	k: 559	n:3450000
Cons ci ratio: 8.947461e-03	ci left: 5.246764e-02	ci right 5.293949e-02	k: 181826	n:3450000
KS ci ratio: 6.701696e-02	ci left: 9.575171e-04	ci right 1.024195e-03	k: 3417	n:3450000
SPEG   3450000 perm   5248 sec   (657 perm/sec)   p_kst 9.904348e-04   p_cons 5.270319e-02   p_joint 1.620290e-04

Joint ci ratio: 1.653418e-01	ci left: 1.489986e-04	ci right 1.761270e-04	k: 561	n:3460000
Cons ci ratio: 8.935221e-03	ci left: 5.246019e-02	ci right 5.293131e-02	k: 182326	n:3460000
KS ci ratio: 6.691914e-02	ci left: 9.575915e-04	ci right 1.024173e-03	k: 3427	n:3460000
SPEG   3460000 perm   5275 sec   (656 perm/sec)   p_kst 9.904624e-04   p_cons 5.269538e-02   p_joint 1.621387e-04

Joint ci ratio: 1.649022e-01	ci left: 1.493980e-04	ci right 1.765197e-04	k: 564	n:3470000
Cons ci ratio: 8.922103e-03	ci left: 5.246313e-02	ci right 5.293359e-02	k: 182862	n:3470000
KS ci ratio: 6.681202e-02	ci left: 9.579489e-04	ci right 1.024445e-03	k: 3438	n:3470000
SPEG   3470000 perm   5303 sec   (654 perm/sec)   p_kst 9.907781e-04   p_cons 5.269798e-02   p_joint 1.625360e-04

Joint ci ratio: 1.649022e-01	ci left: 1.489687e-04	ci right 1.760125e-04	k: 564	n:3480000
Cons ci ratio: 8.909659e-03	ci left: 5.245917e-02	ci right 5.292893e-02	k: 183374	n:3480000
KS ci ratio: 6.673446e-02	ci left: 9.574567e-04	ci right 1.023838e-03	k: 3446	n:3480000
SPEG   3480000 perm   5331 sec   (653 perm/sec)   p_kst 9.902299e-04   p_cons 5.269368e-02   p_joint 1.620690e-04

Joint ci ratio: 1.644661e-01	ci left: 1.493660e-04	ci right 1.764031e-04	k: 567	n:3490000
Cons ci ratio: 8.897114e-03	ci left: 5.245695e-02	ci right 5.292603e-02	k: 183892	n:3490000
KS ci ratio: 6.658006e-02	ci left: 9.592214e-04	ci right 1.025565e-03	k: 3462	n:3490000
SPEG   3490000 perm   5359 sec   (651 perm/sec)   p_kst 9.919771e-04   p_cons 5.269112e-02   p_joint 1.624642e-04

Joint ci ratio: 1.365436e-01	ci left: 2.193519e-04	ci right 2.517701e-04	k: 823	n:3500000
Cons ci ratio: 8.884418e-03	ci left: 5.245702e-02	ci right 5.292543e-02	k: 184418	n:3500000
KS ci ratio: 6.647456e-02	ci left: 9.595713e-04	ci right 1.025830e-03	k: 3473	n:3500000
SPEG   3500000 perm   5387 sec   (650 perm/sec)   p_kst 9.922857e-04   p_cons 5.269086e-02   p_joint 2.351429e-04

Joint ci ratio: 1.362133e-01	ci left: 2.198277e-04	ci right 2.522312e-04	k: 827	n:3510000
Cons ci ratio: 8.871472e-03	ci left: 5.246051e-02	ci right 5.292826e-02	k: 184956	n:3510000
KS ci ratio: 6.635050e-02	ci left: 9.604797e-04	ci right 1.026673e-03	k: 3486	n:3510000
SPEG   3510000 perm   5416 sec   (648 perm/sec)   p_kst 9.931624e-04   p_cons 5.269402e-02   p_joint 2.356125e-04

Joint ci ratio: 1.358039e-01	ci left: 2.205753e-04	ci right 2.529834e-04	k: 832	n:3520000
Cons ci ratio: 8.857777e-03	ci left: 5.247305e-02	ci right 5.294019e-02	k: 185526	n:3520000
KS ci ratio: 6.624608e-02	ci left: 9.608243e-04	ci right 1.026933e-03	k: 3497	n:3520000
SPEG   3520000 perm   5444 sec   (647 perm/sec)   p_kst 9.934659e-04   p_cons 5.270625e-02   p_joint 2.363636e-04

Joint ci ratio: 1.357224e-01	ci left: 2.202241e-04	ci right 2.525597e-04	k: 833	n:3530000
Cons ci ratio: 8.845951e-03	ci left: 5.246516e-02	ci right 5.293160e-02	k: 186024	n:3530000
KS ci ratio: 6.617048e-02	ci left: 9.603312e-04	ci right 1.026327e-03	k: 3505	n:3530000
SPEG   3530000 perm   5472 sec   (645 perm/sec)   p_kst 9.929178e-04   p_cons 5.269802e-02   p_joint 2.359773e-04

Joint ci ratio: 1.357225e-01	ci left: 2.196020e-04	ci right 2.518462e-04	k: 833	n:3540000
Cons ci ratio: 8.834247e-03	ci left: 5.245648e-02	ci right 5.292222e-02	k: 186519	n:3540000
KS ci ratio: 6.606691e-02	ci left: 9.606743e-04	ci right 1.026587e-03	k: 3516	n:3540000
SPEG   3540000 perm   5500 sec   (644 perm/sec)   p_kst 9.932203e-04   p_cons 5.268898e-02   p_joint 2.353107e-04

Joint ci ratio: 1.355601e-01	ci left: 2.195277e-04	ci right 2.517193e-04	k: 835	n:3550000
Cons ci ratio: 8.822067e-03	ci left: 5.245374e-02	ci right 5.291882e-02	k: 187035	n:3550000
KS ci ratio: 6.597318e-02	ci left: 9.607386e-04	ci right 1.026559e-03	k: 3526	n:3550000
SPEG   3550000 perm   5528 sec   (642 perm/sec)   p_kst 9.932394e-04   p_cons 5.268592e-02   p_joint 2.352113e-04

Joint ci ratio: 1.353175e-01	ci left: 2.197252e-04	ci right 2.518834e-04	k: 838	n:3560000
Cons ci ratio: 8.809714e-03	ci left: 5.245355e-02	ci right 5.291797e-02	k: 187560	n:3560000
KS ci ratio: 6.585190e-02	ci left: 9.616314e-04	ci right 1.027387e-03	k: 3539	n:3560000
SPEG   3560000 perm   5557 sec   (641 perm/sec)   p_kst 9.941011e-04   p_cons 5.268539e-02   p_joint 2.353933e-04

Joint ci ratio: 1.351565e-01	ci left: 2.196509e-04	ci right 2.517571e-04	k: 840	n:3570000
Cons ci ratio: 8.797314e-03	ci left: 5.245447e-02	ci right 5.291824e-02	k: 188089	n:3570000
KS ci ratio: 6.574056e-02	ci left: 9.622438e-04	ci right 1.027926e-03	k: 3551	n:3570000
SPEG   3570000 perm   5585 sec   (639 perm/sec)   p_kst 9.946779e-04   p_cons 5.268599e-02   p_joint 2.352941e-04

Joint ci ratio: 1.349160e-01	ci left: 2.198471e-04	ci right 2.519201e-04	k: 843	n:3580000
Cons ci ratio: 8.784917e-03	ci left: 5.245595e-02	ci right 5.291908e-02	k: 188620	n:3580000
KS ci ratio: 6.565744e-02	ci left: 9.620287e-04	ci right 1.027610e-03	k: 3560	n:3580000
SPEG   3580000 perm   5613 sec   (638 perm/sec)   p_kst 9.944134e-04   p_cons 5.268715e-02   p_joint 2.354749e-04

Joint ci ratio: 1.351566e-01	ci left: 2.184273e-04	ci right 2.503545e-04	k: 840	n:3590000
Cons ci ratio: 8.773061e-03	ci left: 5.245186e-02	ci right 5.291432e-02	k: 189131	n:3590000
KS ci ratio: 6.553789e-02	ci left: 9.629107e-04	ci right 1.028428e-03	k: 3573	n:3590000
SPEG   3590000 perm   5641 sec   (636 perm/sec)   p_kst 9.952646e-04   p_cons 5.268273e-02   p_joint 2.339833e-04

Joint ci ratio: 1.349161e-01	ci left: 2.186257e-04	ci right 2.505206e-04	k: 843	n:3600000
Cons ci ratio: 8.760718e-03	ci left: 5.245389e-02	ci right 5.291572e-02	k: 189664	n:3600000
KS ci ratio: 6.547383e-02	ci left: 9.621485e-04	ci right 1.027547e-03	k: 3580	n:3600000
SPEG   3600000 perm   5670 sec   (635 perm/sec)   p_kst 9.944444e-04   p_cons 5.268444e-02   p_joint 2.341667e-04

Joint ci ratio: 1.350763e-01	ci left: 2.174848e-04	ci right 2.492539e-04	k: 841	n:3610000
Cons ci ratio: 8.748863e-03	ci left: 5.245094e-02	ci right 5.291211e-02	k: 190179	n:3610000
KS ci ratio: 6.535528e-02	ci left: 9.630255e-04	ci right 1.028361e-03	k: 3593	n:3610000
SPEG   3610000 perm   5699 sec   (633 perm/sec)   p_kst 9.952909e-04   p_cons 5.268116e-02   p_joint 2.329640e-04

Joint ci ratio: 1.350764e-01	ci left: 2.168840e-04	ci right 2.485654e-04	k: 841	n:3620000
Cons ci ratio: 8.735050e-03	ci left: 5.247088e-02	ci right 5.293149e-02	k: 190777	n:3620000
KS ci ratio: 6.525548e-02	ci left: 9.633543e-04	ci right 1.028608e-03	k: 3604	n:3620000
SPEG   3620000 perm   5727 sec   (632 perm/sec)   p_kst 9.955801e-04   p_cons 5.270083e-02   p_joint 2.323204e-04

Joint ci ratio: 1.349163e-01	ci left: 2.168189e-04	ci right 2.484502e-04	k: 843	n:3630000
Cons ci ratio: 8.722697e-03	ci left: 5.247477e-02	ci right 5.293476e-02	k: 191317	n:3630000
KS ci ratio: 6.517419e-02	ci left: 9.631393e-04	ci right 1.028294e-03	k: 3613	n:3630000
SPEG   3630000 perm   5757 sec   (631 perm/sec)   p_kst 9.953168e-04   p_cons 5.270441e-02   p_joint 2.322314e-04

Joint ci ratio: 1.347567e-01	ci left: 2.167541e-04	ci right 2.483356e-04	k: 845	n:3640000
Cons ci ratio: 8.710612e-03	ci left: 5.247617e-02	ci right 5.293553e-02	k: 191848	n:3640000
KS ci ratio: 6.503034e-02	ci left: 9.648174e-04	ci right 1.029937e-03	k: 3629	n:3640000
SPEG   3640000 perm   5786 sec   (629 perm/sec)   p_kst 9.969780e-04   p_cons 5.270549e-02   p_joint 2.321429e-04

Joint ci ratio: 1.345184e-01	ci left: 2.169545e-04	ci right 2.485048e-04	k: 848	n:3650000
Cons ci ratio: 8.698411e-03	ci left: 5.247947e-02	ci right 5.293822e-02	k: 192386	n:3650000
KS ci ratio: 6.492310e-02	ci left: 9.654084e-04	ci right 1.030456e-03	k: 3641	n:3650000
SPEG   3650000 perm   5815 sec   (628 perm/sec)   p_kst 9.975342e-04   p_cons 5.270849e-02   p_joint 2.323288e-04

Joint ci ratio: 1.349964e-01	ci left: 2.147776e-04	ci right 2.461313e-04	k: 842	n:3660000
Cons ci ratio: 8.686664e-03	ci left: 5.247813e-02	ci right 5.293624e-02	k: 192907	n:3660000
KS ci ratio: 6.483415e-02	ci left: 9.654586e-04	ci right 1.030417e-03	k: 3651	n:3660000
SPEG   3660000 perm   5844 sec   (626 perm/sec)   p_kst 9.975410e-04   p_cons 5.270683e-02   p_joint 2.300546e-04

Joint ci ratio: 1.346772e-01	ci left: 2.152456e-04	ci right 2.465873e-04	k: 846	n:3670000
Cons ci ratio: 8.674728e-03	ci left: 5.247951e-02	ci right 5.293700e-02	k: 193438	n:3670000
KS ci ratio: 6.477213e-02	ci left: 9.647043e-04	ci right 1.029548e-03	k: 3658	n:3670000
SPEG   3670000 perm   5873 sec   (625 perm/sec)   p_kst 9.967302e-04   p_cons 5.270790e-02   p_joint 2.305177e-04

Joint ci ratio: 1.344393e-01	ci left: 2.154484e-04	ci right 2.467598e-04	k: 849	n:3680000
Cons ci ratio: 8.662936e-03	ci left: 5.247980e-02	ci right 5.293667e-02	k: 193965	n:3680000
KS ci ratio: 6.466616e-02	ci left: 9.652910e-04	ci right 1.030064e-03	k: 3670	n:3680000
SPEG   3680000 perm   5903 sec   (623 perm/sec)   p_kst 9.972826e-04   p_cons 5.270788e-02   p_joint 2.307065e-04

Joint ci ratio: 1.341241e-01	ci left: 2.159122e-04	ci right 2.472115e-04	k: 853	n:3690000
Cons ci ratio: 8.650675e-03	ci left: 5.248604e-02	ci right 5.294231e-02	k: 194514	n:3690000
KS ci ratio: 6.455194e-02	ci left: 9.661411e-04	ci right 1.030852e-03	k: 3683	n:3690000
SPEG   3690000 perm   5932 sec   (622 perm/sec)   p_kst 9.981030e-04   p_cons 5.271382e-02   p_joint 2.311653e-04

Joint ci ratio: 1.338891e-01	ci left: 2.161123e-04	ci right 2.473813e-04	k: 856	n:3700000
Cons ci ratio: 8.638490e-03	ci left: 5.249197e-02	ci right 5.294765e-02	k: 195062	n:3700000
KS ci ratio: 6.441216e-02	ci left: 9.677846e-04	ci right 1.032460e-03	k: 3699	n:3700000
SPEG   3700000 perm   5962 sec   (621 perm/sec)   p_kst 9.997297e-04   p_cons 5.271946e-02   p_joint 2.313514e-04

Joint ci ratio: 1.338111e-01	ci left: 2.157903e-04	ci right 2.469931e-04	k: 857	n:3710000
Cons ci ratio: 8.626262e-03	ci left: 5.249895e-02	ci right 5.295404e-02	k: 195614	n:3710000
KS ci ratio: 6.430795e-02	ci left: 9.683584e-04	ci right 1.032964e-03	k: 3711	n:3710000
SPEG   3710000 perm   5992 sec   (619 perm/sec)   p_kst 1.000270e-03   p_cons 5.272615e-02   p_joint 2.309973e-04

Joint ci ratio: 1.335778e-01	ci left: 2.159897e-04	ci right 2.471626e-04	k: 860	n:3720000
Cons ci ratio: 8.614156e-03	ci left: 5.250509e-02	ci right 5.295959e-02	k: 196163	n:3720000
KS ci ratio: 6.418699e-02	ci left: 9.694583e-04	ci right 1.034011e-03	k: 3725	n:3720000
SPEG   3720000 perm   6021 sec   (618 perm/sec)   p_kst 1.001344e-03   p_cons 5.273199e-02   p_joint 2.311828e-04

Joint ci ratio: 1.332685e-01	ci left: 2.164472e-04	ci right 2.476081e-04	k: 864	n:3730000
Cons ci ratio: 8.602770e-03	ci left: 5.250343e-02	ci right 5.295732e-02	k: 196683	n:3730000
KS ci ratio: 6.411821e-02	ci left: 9.689696e-04	ci right 1.033418e-03	k: 3733	n:3730000
SPEG   3730000 perm   6051 sec   (616 perm/sec)   p_kst 1.000804e-03   p_cons 5.273003e-02   p_joint 2.316354e-04

Joint ci ratio: 1.331916e-01	ci left: 2.161269e-04	ci right 2.472223e-04	k: 865	n:3740000
Cons ci ratio: 8.591314e-03	ci left: 5.250312e-02	ci right 5.295640e-02	k: 197208	n:3740000
KS ci ratio: 6.404108e-02	ci left: 9.687466e-04	ci right 1.033099e-03	k: 3742	n:3740000
SPEG   3740000 perm   6081 sec   (615 perm/sec)   p_kst 1.000535e-03   p_cons 5.272941e-02   p_joint 2.312834e-04

Joint ci ratio: 1.331916e-01	ci left: 2.155506e-04	ci right 2.465631e-04	k: 865	n:3750000
Cons ci ratio: 8.580133e-03	ci left: 5.250015e-02	ci right 5.295281e-02	k: 197723	n:3750000
KS ci ratio: 6.388758e-02	ci left: 9.708866e-04	ci right 1.035221e-03	k: 3760	n:3750000
SPEG   3750000 perm   6112 sec   (614 perm/sec)   p_kst 1.002667e-03   p_cons 5.272613e-02   p_joint 2.306667e-04

Joint ci ratio: 1.331917e-01	ci left: 2.149773e-04	ci right 2.459073e-04	k: 865	n:3760000
Cons ci ratio: 8.568152e-03	ci left: 5.250702e-02	ci right 5.295910e-02	k: 198275	n:3760000
KS ci ratio: 6.382824e-02	ci left: 9.701364e-04	ci right 1.034359e-03	k: 3767	n:3760000
SPEG   3760000 perm   6142 sec   (612 perm/sec)   p_kst 1.001862e-03   p_cons 5.273271e-02   p_joint 2.300532e-04

Joint ci ratio: 1.335004e-01	ci left: 2.133814e-04	ci right 2.441587e-04	k: 861	n:3770000
Cons ci ratio: 8.556606e-03	ci left: 5.250935e-02	ci right 5.296084e-02	k: 198810	n:3770000
KS ci ratio: 6.369310e-02	ci left: 9.717395e-04	ci right 1.035927e-03	k: 3783	n:3770000
SPEG   3770000 perm   6172 sec   (611 perm/sec)   p_kst 1.003448e-03   p_cons 5.273475e-02   p_joint 2.283820e-04

Joint ci ratio: 1.048594e-01	ci left: 3.501942e-04	ci right 3.892022e-04	k: 1396	n:3780000
Cons ci ratio: 8.545130e-03	ci left: 5.251140e-02	ci right 5.296230e-02	k: 199344	n:3780000
KS ci ratio: 6.362589e-02	ci left: 9.712514e-04	ci right 1.035337e-03	k: 3791	n:3780000
SPEG   3780000 perm   6202 sec   (609 perm/sec)   p_kst 1.002910e-03   p_cons 5.273651e-02   p_joint 3.693122e-04

Joint ci ratio: 1.046723e-01	ci left: 3.505549e-04	ci right 3.895291e-04	k: 1401	n:3790000
Cons ci ratio: 8.534038e-03	ci left: 5.250950e-02	ci right 5.295979e-02	k: 199863	n:3790000
KS ci ratio: 6.350038e-02	ci left: 9.725837e-04	ci right 1.036626e-03	k: 3806	n:3790000
SPEG   3790000 perm   6232 sec   (608 perm/sec)   p_kst 1.004222e-03   p_cons 5.273430e-02   p_joint 3.696570e-04

Joint ci ratio: 1.046723e-01	ci left: 3.496323e-04	ci right 3.885040e-04	k: 1401	n:3800000
Cons ci ratio: 8.522630e-03	ci left: 5.251180e-02	ci right 5.296151e-02	k: 200398	n:3800000
KS ci ratio: 6.339222e-02	ci left: 9.733910e-04	ci right 1.037373e-03	k: 3819	n:3800000
SPEG   3800000 perm   6263 sec   (607 perm/sec)   p_kst 1.005000e-03   p_cons 5.273632e-02   p_joint 3.686842e-04

Joint ci ratio: 1.045233e-01	ci left: 3.497371e-04	ci right 3.885617e-04	k: 1405	n:3810000
Cons ci ratio: 8.512430e-03	ci left: 5.250048e-02	ci right 5.294955e-02	k: 200881	n:3810000
KS ci ratio: 6.332596e-02	ci left: 9.729027e-04	ci right 1.036783e-03	k: 3827	n:3810000
SPEG   3810000 perm   6293 sec   (605 perm/sec)   p_kst 1.004462e-03   p_cons 5.272467e-02   p_joint 3.687664e-04

Joint ci ratio: 1.044120e-01	ci left: 3.495863e-04	ci right 3.883504e-04	k: 1408	n:3820000
Cons ci ratio: 8.502200e-03	ci left: 5.248999e-02	ci right 5.293843e-02	k: 201367	n:3820000
KS ci ratio: 6.325165e-02	ci left: 9.726745e-04	ci right 1.036463e-03	k: 3836	n:3820000
SPEG   3820000 perm   6323 sec   (604 perm/sec)   p_kst 1.004188e-03   p_cons 5.271387e-02   p_joint 3.685864e-04

Joint ci ratio: 1.043380e-01	ci left: 3.491821e-04	ci right 3.878722e-04	k: 1410	n:3830000
Cons ci ratio: 8.491030e-03	ci left: 5.249103e-02	ci right 5.293889e-02	k: 201897	n:3830000
KS ci ratio: 6.318584e-02	ci left: 9.721907e-04	ci right 1.035878e-03	k: 3844	n:3830000
SPEG   3830000 perm   6354 sec   (603 perm/sec)   p_kst 1.003655e-03   p_cons 5.271462e-02   p_joint 3.681462e-04

Joint ci ratio: 1.042642e-01	ci left: 3.487801e-04	ci right 3.873965e-04	k: 1412	n:3840000
Cons ci ratio: 8.479771e-03	ci left: 5.249362e-02	ci right 5.294090e-02	k: 202433	n:3840000
KS ci ratio: 6.310383e-02	ci left: 9.722220e-04	ci right 1.035826e-03	k: 3854	n:3840000
SPEG   3840000 perm   6384 sec   (602 perm/sec)   p_kst 1.003646e-03   p_cons 5.271693e-02   p_joint 3.677083e-04

Joint ci ratio: 1.042642e-01	ci left: 3.478741e-04	ci right 3.863903e-04	k: 1412	n:3850000
Cons ci ratio: 8.468204e-03	ci left: 5.250035e-02	ci right 5.294708e-02	k: 202985	n:3850000
KS ci ratio: 6.303847e-02	ci left: 9.717419e-04	ci right 1.035246e-03	k: 3862	n:3850000
SPEG   3850000 perm   6415 sec   (600 perm/sec)   p_kst 1.003117e-03   p_cons 5.272338e-02   p_joint 3.667532e-04

Joint ci ratio: 1.042274e-01	ci left: 3.472252e-04	ci right 3.856551e-04	k: 1413	n:3860000
Cons ci ratio: 8.456575e-03	ci left: 5.250834e-02	ci right 5.295451e-02	k: 203542	n:3860000
KS ci ratio: 6.293264e-02	ci left: 9.725393e-04	ci right 1.035985e-03	k: 3875	n:3860000
SPEG   3860000 perm   6445 sec   (599 perm/sec)   p_kst 1.003886e-03   p_cons 5.273109e-02   p_joint 3.660622e-04

Joint ci ratio: 1.040802e-01	ci left: 3.473347e-04	ci right 3.857191e-04	k: 1417	n:3870000
Cons ci ratio: 8.444928e-03	ci left: 5.251705e-02	ci right 5.296269e-02	k: 204102	n:3870000
KS ci ratio: 6.286781e-02	ci left: 9.720609e-04	ci right 1.035408e-03	k: 3883	n:3870000
SPEG   3870000 perm   6475 sec   (598 perm/sec)   p_kst 1.003359e-03   p_cons 5.273953e-02   p_joint 3.661499e-04

Joint ci ratio: 1.041538e-01	ci left: 3.459374e-04	ci right 3.841961e-04	k: 1415	n:3880000
Cons ci ratio: 8.434113e-03	ci left: 5.251647e-02	ci right 5.296152e-02	k: 204626	n:3880000
KS ci ratio: 6.278704e-02	ci left: 9.720924e-04	ci right 1.035357e-03	k: 3893	n:3880000
SPEG   3880000 perm   6506 sec   (596 perm/sec)   p_kst 1.003351e-03   p_cons 5.273866e-02   p_joint 3.646907e-04

Joint ci ratio: 1.039338e-01	ci left: 3.465504e-04	ci right 3.847910e-04	k: 1421	n:3890000
Cons ci ratio: 8.422797e-03	ci left: 5.252230e-02	ci right 5.296680e-02	k: 205175	n:3890000
KS ci ratio: 6.271461e-02	ci left: 9.718708e-04	ci right 1.035045e-03	k: 3902	n:3890000
SPEG   3890000 perm   6538 sec   (595 perm/sec)   p_kst 1.003085e-03   p_cons 5.274422e-02   p_joint 3.652956e-04

Joint ci ratio: 1.038244e-01	ci left: 3.464110e-04	ci right 3.845936e-04	k: 1424	n:3900000
Cons ci ratio: 8.411893e-03	ci left: 5.252375e-02	ci right 5.296769e-02	k: 205707	n:3900000
KS ci ratio: 6.263443e-02	ci left: 9.719027e-04	ci right 1.034996e-03	k: 3912	n:3900000
SPEG   3900000 perm   6569 sec   (594 perm/sec)   p_kst 1.003077e-03   p_cons 5.274538e-02   p_joint 3.651282e-04

Joint ci ratio: 1.037516e-01	ci left: 3.460233e-04	ci right 3.841348e-04	k: 1426	n:3910000
Cons ci ratio: 8.401870e-03	ci left: 5.251524e-02	ci right 5.295857e-02	k: 206200	n:3910000
KS ci ratio: 6.250672e-02	ci left: 9.734451e-04	ci right 1.036505e-03	k: 3928	n:3910000
SPEG   3910000 perm   6601 sec   (592 perm/sec)   p_kst 1.004604e-03   p_cons 5.273657e-02   p_joint 3.647059e-04

Joint ci ratio: 1.035341e-01	ci left: 3.466315e-04	ci right 3.847251e-04	k: 1432	n:3920000
Cons ci ratio: 8.391304e-03	ci left: 5.251364e-02	ci right 5.295640e-02	k: 206720	n:3920000
KS ci ratio: 6.242732e-02	ci left: 9.734730e-04	ci right 1.036451e-03	k: 3938	n:3920000
SPEG   3920000 perm   6632 sec   (591 perm/sec)   p_kst 1.004592e-03   p_cons 5.273469e-02   p_joint 3.653061e-04

Joint ci ratio: 1.032821e-01	ci left: 3.474846e-04	ci right 3.855733e-04	k: 1439	n:3930000
Cons ci ratio: 8.381376e-03	ci left: 5.250495e-02	ci right 5.294711e-02	k: 207212	n:3930000
KS ci ratio: 6.234033e-02	ci left: 9.737513e-04	ci right 1.036657e-03	k: 3949	n:3930000
SPEG   3930000 perm   6664 sec   (590 perm/sec)   p_kst 1.004835e-03   p_cons 5.272570e-02   p_joint 3.661578e-04

Joint ci ratio: 1.031033e-01	ci left: 3.478390e-04	ci right 3.858965e-04	k: 1444	n:3940000
Cons ci ratio: 8.371292e-03	ci left: 5.249858e-02	ci right 5.294015e-02	k: 207713	n:3940000
KS ci ratio: 6.225370e-02	ci left: 9.740283e-04	ci right 1.036861e-03	k: 3960	n:3940000
SPEG   3940000 perm   6695 sec   (589 perm/sec)   p_kst 1.005076e-03   p_cons 5.271904e-02   p_joint 3.664975e-04

Joint ci ratio: 1.029609e-01	ci left: 3.479449e-04	ci right 3.859583e-04	k: 1448	n:3950000
Cons ci ratio: 8.360417e-03	ci left: 5.250209e-02	ci right 5.294312e-02	k: 208253	n:3950000
KS ci ratio: 6.217527e-02	ci left: 9.740546e-04	ci right 1.036807e-03	k: 3970	n:3950000
SPEG   3950000 perm   6726 sec   (587 perm/sec)   p_kst 1.005063e-03   p_cons 5.272228e-02   p_joint 3.665823e-04

Joint ci ratio: 1.029254e-01	ci left: 3.473123e-04	ci right 3.852427e-04	k: 1449	n:3960000
Cons ci ratio: 8.350324e-03	ci left: 5.249677e-02	ci right 5.293722e-02	k: 208758	n:3960000
KS ci ratio: 6.210494e-02	ci left: 9.738323e-04	ci right 1.036497e-03	k: 3979	n:3960000
SPEG   3960000 perm   6758 sec   (586 perm/sec)   p_kst 1.004798e-03   p_cons 5.271667e-02   p_joint 3.659091e-04

Joint ci ratio: 1.027484e-01	ci left: 3.476645e-04	ci right 3.855641e-04	k: 1454	n:3970000
Cons ci ratio: 8.340309e-03	ci left: 5.249097e-02	ci right 5.293084e-02	k: 209261	n:3970000
KS ci ratio: 6.198820e-02	ci left: 9.750991e-04	ci right 1.037723e-03	k: 3994	n:3970000
SPEG   3970000 perm   6790 sec   (585 perm/sec)   p_kst 1.006045e-03   p_cons 5.271058e-02   p_joint 3.662469e-04

Joint ci ratio: 1.026426e-01	ci left: 3.475254e-04	ci right 3.853685e-04	k: 1457	n:3980000
Cons ci ratio: 8.330434e-03	ci left: 5.248395e-02	ci right 5.292323e-02	k: 209759	n:3980000
KS ci ratio: 6.190302e-02	ci left: 9.753701e-04	ci right 1.037922e-03	k: 4005	n:3980000
SPEG   3980000 perm   6822 sec   (583 perm/sec)   p_kst 1.006281e-03   p_cons 5.270327e-02   p_joint 3.660804e-04

Joint ci ratio: 1.025372e-01	ci left: 3.473870e-04	ci right 3.851738e-04	k: 1460	n:3990000
Cons ci ratio: 8.319467e-03	ci left: 5.249047e-02	ci right 5.292923e-02	k: 210311	n:3990000
KS ci ratio: 6.184903e-02	ci left: 9.746528e-04	ci right 1.037103e-03	k: 4012	n:3990000
SPEG   3990000 perm   6854 sec   (582 perm/sec)   p_kst 1.005514e-03   p_cons 5.270952e-02   p_joint 3.659148e-04

Joint ci ratio: 1.024671e-01	ci left: 3.470057e-04	ci right 3.847237e-04	k: 1462	n:4000000
Cons ci ratio: 8.308544e-03	ci left: 5.249696e-02	ci right 5.293519e-02	k: 210863	n:4000000
KS ci ratio: 6.178749e-02	ci left: 9.741852e-04	ci right 1.036541e-03	k: 4020	n:4000000
SPEG   4000000 perm   6886 sec   (581 perm/sec)   p_kst 1.005000e-03   p_cons 5.271575e-02   p_joint 3.655000e-04

Joint ci ratio: 1.024671e-01	ci left: 3.461404e-04	ci right 3.837643e-04	k: 1462	n:4010000
Cons ci ratio: 8.298657e-03	ci left: 5.249147e-02	ci right 5.292913e-02	k: 211367	n:4010000
KS ci ratio: 6.173381e-02	ci left: 9.734745e-04	ci right 1.035728e-03	k: 4027	n:4010000
SPEG   4010000 perm   6917 sec   (580 perm/sec)   p_kst 1.004239e-03   p_cons 5.270998e-02   p_joint 3.645885e-04

Joint ci ratio: 1.023972e-01	ci left: 3.457641e-04	ci right 3.833199e-04	k: 1464	n:4020000
Cons ci ratio: 8.288434e-03	ci left: 5.249047e-02	ci right 5.292759e-02	k: 211889	n:4020000
KS ci ratio: 6.165732e-02	ci left: 9.735021e-04	ci right 1.035678e-03	k: 4037	n:4020000
SPEG   4020000 perm   6949 sec   (579 perm/sec)   p_kst 1.004229e-03   p_cons 5.270871e-02   p_joint 3.641791e-04

Joint ci ratio: 1.022925e-01	ci left: 3.456315e-04	ci right 3.831322e-04	k: 1467	n:4030000
Cons ci ratio: 8.278167e-03	ci left: 5.249047e-02	ci right 5.292704e-02	k: 212415	n:4030000
KS ci ratio: 6.159635e-02	ci left: 9.730410e-04	ci right 1.035124e-03	k: 4045	n:4030000
SPEG   4030000 perm   6981 sec   (577 perm/sec)   p_kst 1.003722e-03   p_cons 5.270844e-02   p_joint 3.640199e-04

Joint ci ratio: 1.021882e-01	ci left: 3.454995e-04	ci right 3.829454e-04	k: 1470	n:4040000
Cons ci ratio: 8.267466e-03	ci left: 5.249616e-02	ci right 5.293221e-02	k: 212964	n:4040000
KS ci ratio: 6.153556e-02	ci left: 9.725822e-04	ci right 1.034572e-03	k: 4053	n:4040000
SPEG   4040000 perm   7013 sec   (576 perm/sec)   p_kst 1.003218e-03   p_cons 5.271386e-02   p_joint 3.638614e-04

Joint ci ratio: 1.029258e-01	ci left: 3.395942e-04	ci right 3.766818e-04	k: 1449	n:4050000
Cons ci ratio: 8.256950e-03	ci left: 5.250009e-02	ci right 5.293561e-02	k: 213506	n:4050000
KS ci ratio: 6.149010e-02	ci left: 9.716394e-04	ci right 1.033522e-03	k: 4059	n:4050000
SPEG   4050000 perm   7046 sec   (575 perm/sec)   p_kst 1.002222e-03   p_cons 5.271753e-02   p_joint 3.577778e-04

Joint ci ratio: 1.027841e-01	ci left: 3.397176e-04	ci right 3.767646e-04	k: 1453	n:4060000
Cons ci ratio: 8.246880e-03	ci left: 5.249908e-02	ci right 5.293407e-02	k: 214028	n:4060000
KS ci ratio: 6.137679e-02	ci left: 9.728841e-04	ci right 1.034728e-03	k: 4074	n:4060000
SPEG   4060000 perm   7079 sec   (574 perm/sec)   p_kst 1.003448e-03   p_cons 5.271626e-02   p_joint 3.578818e-04

Joint ci ratio: 1.026783e-01	ci left: 3.396011e-04	ci right 3.765949e-04	k: 1456	n:4070000
Cons ci ratio: 8.236908e-03	ci left: 5.249735e-02	ci right 5.293179e-02	k: 214547	n:4070000
KS ci ratio: 6.127160e-02	ci left: 9.738808e-04	ci right 1.035678e-03	k: 4088	n:4070000
SPEG   4070000 perm   7111 sec   (572 perm/sec)   p_kst 1.004423e-03   p_cons 5.271425e-02   p_joint 3.577396e-04

Joint ci ratio: 1.024324e-01	ci left: 3.404404e-04	ci right 3.774316e-04	k: 1463	n:4080000
Cons ci ratio: 8.226589e-03	ci left: 5.250027e-02	ci right 5.293419e-02	k: 215085	n:4080000
KS ci ratio: 6.119681e-02	ci left: 9.739073e-04	ci right 1.035628e-03	k: 4098	n:4080000
SPEG   4080000 perm   7145 sec   (571 perm/sec)   p_kst 1.004412e-03   p_cons 5.271691e-02   p_joint 3.585784e-04

Joint ci ratio: 1.023626e-01	ci left: 3.400845e-04	ci right 3.770103e-04	k: 1465	n:4090000
Cons ci ratio: 8.216167e-03	ci left: 5.250489e-02	ci right 5.293829e-02	k: 215630	n:4090000
KS ci ratio: 6.115210e-02	ci left: 9.729706e-04	ci right 1.034585e-03	k: 4104	n:4090000
SPEG   4090000 perm   7177 sec   (570 perm/sec)   p_kst 1.003423e-03   p_cons 5.272127e-02   p_joint 3.581907e-04

Joint ci ratio: 1.027137e-01	ci left: 3.368786e-04	ci right 3.735892e-04	k: 1455	n:4100000
Cons ci ratio: 8.205845e-03	ci left: 5.250875e-02	ci right 5.294164e-02	k: 216172	n:4100000
KS ci ratio: 6.110749e-02	ci left: 9.720386e-04	ci right 1.033548e-03	k: 4110	n:4100000
SPEG   4100000 perm   7210 sec   (569 perm/sec)   p_kst 1.002439e-03   p_cons 5.272488e-02   p_joint 3.548780e-04

Joint ci ratio: 1.025729e-01	ci left: 3.370072e-04	ci right 3.736784e-04	k: 1459	n:4110000
Cons ci ratio: 8.196420e-03	ci left: 5.250215e-02	ci right 5.293449e-02	k: 216671	n:4110000
KS ci ratio: 6.101108e-02	ci left: 9.727882e-04	ci right 1.034244e-03	k: 4123	n:4110000
SPEG   4110000 perm   7244 sec   (567 perm/sec)   p_kst 1.003163e-03   p_cons 5.271800e-02   p_joint 3.549878e-04

Joint ci ratio: 1.054669e-01	ci left: 3.175130e-04	ci right 3.530983e-04	k: 1380	n:4120000
Cons ci ratio: 8.186908e-03	ci left: 5.249704e-02	ci right 5.292883e-02	k: 217176	n:4120000
KS ci ratio: 6.092249e-02	ci left: 9.732953e-04	ci right 1.034691e-03	k: 4135	n:4120000
SPEG   4120000 perm   7276 sec   (566 perm/sec)   p_kst 1.003641e-03   p_cons 5.271262e-02   p_joint 3.349515e-04

Joint ci ratio: 1.053907e-01	ci left: 3.172157e-04	ci right 3.527404e-04	k: 1382	n:4130000
Cons ci ratio: 8.176993e-03	ci left: 5.249727e-02	ci right 5.292854e-02	k: 217703	n:4130000
KS ci ratio: 6.083429e-02	ci left: 9.738000e-04	ci right 1.035135e-03	k: 4147	n:4130000
SPEG   4130000 perm   7309 sec   (565 perm/sec)   p_kst 1.004116e-03   p_cons 5.271259e-02   p_joint 3.346247e-04

Joint ci ratio: 1.052386e-01	ci left: 3.173902e-04	ci right 3.528800e-04	k: 1386	n:4140000
Cons ci ratio: 8.167174e-03	ci left: 5.249678e-02	ci right 5.292752e-02	k: 218227	n:4140000
KS ci ratio: 6.076841e-02	ci left: 9.735887e-04	ci right 1.034842e-03	k: 4156	n:4140000
SPEG   4140000 perm   7342 sec   (564 perm/sec)   p_kst 1.003865e-03   p_cons 5.271184e-02   p_joint 3.347826e-04

Joint ci ratio: 1.050494e-01	ci left: 3.177986e-04	ci right 3.532662e-04	k: 1391	n:4150000
Cons ci ratio: 8.157054e-03	ci left: 5.250038e-02	ci right 5.293061e-02	k: 218768	n:4150000
KS ci ratio: 6.066631e-02	ci left: 9.745650e-04	ci right 1.035773e-03	k: 4170	n:4150000
SPEG   4150000 perm   7375 sec   (563 perm/sec)   p_kst 1.004819e-03   p_cons 5.271518e-02   p_joint 3.351807e-04

Joint ci ratio: 1.048237e-01	ci left: 3.184391e-04	ci right 3.538971e-04	k: 1397	n:4160000
Cons ci ratio: 8.147365e-03	ci left: 5.249916e-02	ci right 5.292887e-02	k: 219289	n:4160000
KS ci ratio: 6.060823e-02	ci left: 9.741162e-04	ci right 1.035236e-03	k: 4178	n:4160000
SPEG   4160000 perm   7408 sec   (562 perm/sec)   p_kst 1.004327e-03   p_cons 5.271370e-02   p_joint 3.358173e-04

Joint ci ratio: 1.047488e-01	ci left: 3.181425e-04	ci right 3.535406e-04	k: 1399	n:4170000
Cons ci ratio: 8.138101e-03	ci left: 5.249316e-02	ci right 5.292233e-02	k: 219790	n:4170000
KS ci ratio: 6.057204e-02	ci left: 9.729611e-04	ci right 1.033970e-03	k: 4183	n:4170000
SPEG   4170000 perm   7440 sec   (560 perm/sec)   p_kst 1.003118e-03   p_cons 5.270743e-02   p_joint 3.354916e-04

Joint ci ratio: 1.045622e-01	ci left: 3.185462e-04	ci right 3.539223e-04	k: 1404	n:4180000
Cons ci ratio: 8.127447e-03	ci left: 5.250462e-02	ci right 5.293332e-02	k: 220364	n:4180000
KS ci ratio: 6.049978e-02	ci left: 9.729895e-04	ci right 1.033925e-03	k: 4193	n:4180000
SPEG   4180000 perm   7474 sec   (559 perm/sec)   p_kst 1.003110e-03   p_cons 5.271866e-02   p_joint 3.358852e-04

Joint ci ratio: 1.045251e-01	ci left: 3.180184e-04	ci right 3.533225e-04	k: 1405	n:4190000
Cons ci ratio: 8.118542e-03	ci left: 5.249506e-02	ci right 5.292322e-02	k: 220850	n:4190000
KS ci ratio: 6.047100e-02	ci left: 9.716076e-04	ci right 1.032427e-03	k: 4197	n:4190000
SPEG   4190000 perm   7507 sec   (558 perm/sec)   p_kst 1.001671e-03   p_cons 5.270883e-02   p_joint 3.353222e-04

Joint ci ratio: 1.043767e-01	ci left: 3.181887e-04	ci right 3.534585e-04	k: 1409	n:4200000
Cons ci ratio: 8.108737e-03	ci left: 5.249696e-02	ci right 5.292461e-02	k: 221384	n:4200000
KS ci ratio: 6.039192e-02	ci left: 9.718737e-04	ci right 1.032627e-03	k: 4208	n:4200000
SPEG   4200000 perm   7540 sec   (557 perm/sec)   p_kst 1.001905e-03   p_cons 5.271048e-02   p_joint 3.354762e-04

Joint ci ratio: 1.042290e-01	ci left: 3.183583e-04	ci right 3.535938e-04	k: 1413	n:4210000
Cons ci ratio: 8.098872e-03	ci left: 5.250003e-02	ci right 5.292718e-02	k: 221923	n:4210000
KS ci ratio: 6.033462e-02	ci left: 9.714368e-04	ci right 1.032103e-03	k: 4216	n:4210000
SPEG   4210000 perm   7573 sec   (556 perm/sec)   p_kst 1.001425e-03   p_cons 5.271330e-02   p_joint 3.356295e-04

Joint ci ratio: 1.041553e-01	ci left: 3.180654e-04	ci right 3.532422e-04	k: 1415	n:4220000
Cons ci ratio: 8.089408e-03	ci left: 5.249860e-02	ci right 5.292524e-02	k: 222443	n:4220000
KS ci ratio: 6.029892e-02	ci left: 9.703017e-04	ci right 1.030860e-03	k: 4221	n:4220000
SPEG   4220000 perm   7607 sec   (555 perm/sec)   p_kst 1.000237e-03   p_cons 5.271161e-02   p_joint 3.353081e-04

Joint ci ratio: 1.040819e-01	ci left: 3.177740e-04	ci right 3.528923e-04	k: 1417	n:4230000
Cons ci ratio: 8.079842e-03	ci left: 5.249882e-02	ci right 5.292496e-02	k: 222970	n:4230000
KS ci ratio: 6.022052e-02	ci left: 9.705692e-04	ci right 1.031063e-03	k: 4232	n:4230000
SPEG   4230000 perm   7641 sec   (554 perm/sec)   p_kst 1.000473e-03   p_cons 5.271158e-02   p_joint 3.349882e-04

Joint ci ratio: 1.039354e-01	ci left: 3.179434e-04	ci right 3.530279e-04	k: 1421	n:4240000
Cons ci ratio: 8.070730e-03	ci left: 5.249387e-02	ci right 5.291948e-02	k: 223475	n:4240000
KS ci ratio: 6.014951e-02	ci left: 9.706031e-04	ci right 1.031025e-03	k: 4242	n:4240000
SPEG   4240000 perm   7675 sec   (552 perm/sec)   p_kst 1.000472e-03   p_cons 5.270637e-02   p_joint 3.351415e-04

Joint ci ratio: 1.038989e-01	ci left: 3.174245e-04	ci right 3.524386e-04	k: 1422	n:4250000
Cons ci ratio: 8.061421e-03	ci left: 5.249176e-02	ci right 5.291685e-02	k: 223992	n:4250000
KS ci ratio: 6.009290e-02	ci left: 9.701734e-04	ci right 1.030510e-03	k: 4250	n:4250000
SPEG   4250000 perm   7709 sec   (551 perm/sec)   p_kst 1.000000e-03   p_cons 5.270400e-02   p_joint 3.345882e-04

Joint ci ratio: 1.037895e-01	ci left: 3.173653e-04	ci right 3.523338e-04	k: 1425	n:4260000
Cons ci ratio: 8.052144e-03	ci left: 5.248965e-02	ci right 5.291424e-02	k: 224509	n:4260000
KS ci ratio: 6.002939e-02	ci left: 9.699769e-04	ci right 1.030235e-03	k: 4259	n:4260000
SPEG   4260000 perm   7743 sec   (550 perm/sec)   p_kst 9.997653e-04   p_cons 5.270164e-02   p_joint 3.345070e-04

Joint ci ratio: 1.037532e-01	ci left: 3.168501e-04	ci right 3.517490e-04	k: 1426	n:4270000
Cons ci ratio: 8.042710e-03	ci left: 5.248990e-02	ci right 5.291399e-02	k: 225036	n:4270000
KS ci ratio: 5.993799e-02	ci left: 9.707041e-04	ci right 1.030913e-03	k: 4272	n:4270000
SPEG   4270000 perm   7778 sec   (549 perm/sec)   p_kst 1.000468e-03   p_cons 5.270164e-02   p_joint 3.339578e-04

Joint ci ratio: 1.036806e-01	ci left: 3.165650e-04	ci right 3.514065e-04	k: 1428	n:4280000
Cons ci ratio: 8.033177e-03	ci left: 5.249177e-02	ci right 5.291537e-02	k: 225570	n:4280000
KS ci ratio: 5.986098e-02	ci left: 9.709678e-04	ci right 1.031112e-03	k: 4283	n:4280000
SPEG   4280000 perm   7812 sec   (548 perm/sec)   p_kst 1.000701e-03   p_cons 5.270327e-02   p_joint 3.336449e-04

Joint ci ratio: 1.036081e-01	ci left: 3.162812e-04	ci right 3.510657e-04	k: 1430	n:4290000
Cons ci ratio: 8.023772e-03	ci left: 5.249248e-02	ci right 5.291559e-02	k: 226099	n:4290000
KS ci ratio: 5.980518e-02	ci left: 9.705413e-04	ci right 1.030602e-03	k: 4291	n:4290000
SPEG   4290000 perm   7847 sec   (547 perm/sec)   p_kst 1.000233e-03   p_cons 5.270373e-02   p_joint 3.333333e-04

Joint ci ratio: 1.034997e-01	ci left: 3.162253e-04	ci right 3.509650e-04	k: 1433	n:4300000
Cons ci ratio: 8.014662e-03	ci left: 5.248993e-02	ci right 5.291253e-02	k: 226614	n:4300000
KS ci ratio: 5.977041e-02	ci left: 9.694296e-04	ci right 1.029385e-03	k: 4296	n:4300000
SPEG   4300000 perm   7880 sec   (546 perm/sec)   p_kst 9.990698e-04   p_cons 5.270093e-02   p_joint 3.332558e-04

Joint ci ratio: 1.033556e-01	ci left: 3.163956e-04	ci right 3.511028e-04	k: 1437	n:4310000
Cons ci ratio: 8.005675e-03	ci left: 5.248623e-02	ci right 5.290833e-02	k: 227124	n:4310000
KS ci ratio: 5.969405e-02	ci left: 9.696945e-04	ci right 1.029587e-03	k: 4307	n:4310000
SPEG   4310000 perm   7914 sec   (545 perm/sec)   p_kst 9.993039e-04   p_cons 5.269698e-02   p_joint 3.334107e-04

Joint ci ratio: 1.033197e-01	ci left: 3.158887e-04	ci right 3.505275e-04	k: 1438	n:4320000
Cons ci ratio: 7.996533e-03	ci left: 5.248487e-02	ci right 5.290647e-02	k: 227644	n:4320000
KS ci ratio: 5.961797e-02	ci left: 9.699581e-04	ci right 1.029788e-03	k: 4318	n:4320000
SPEG   4320000 perm   7949 sec   (543 perm/sec)   p_kst 9.995370e-04   p_cons 5.269537e-02   p_joint 3.328704e-04

Joint ci ratio: 1.032839e-01	ci left: 3.153842e-04	ci right 3.499549e-04	k: 1439	n:4330000
Cons ci ratio: 7.987607e-03	ci left: 5.248120e-02	ci right 5.290231e-02	k: 228154	n:4330000
KS ci ratio: 5.954219e-02	ci left: 9.702206e-04	ci right 1.029988e-03	k: 4329	n:4330000
SPEG   4330000 perm   7983 sec   (542 perm/sec)   p_kst 9.997691e-04   p_cons 5.269145e-02   p_joint 3.323326e-04

Joint ci ratio: 9.271165e-02	ci left: 3.926583e-04	ci right 4.310549e-04	k: 1786	n:4340000
Cons ci ratio: 7.978637e-03	ci left: 5.247847e-02	ci right 5.289908e-02	k: 228668	n:4340000
KS ci ratio: 5.947355e-02	ci left: 9.702550e-04	ci right 1.029953e-03	k: 4339	n:4340000
SPEG   4340000 perm   8017 sec   (541 perm/sec)   p_kst 9.997696e-04   p_cons 5.268848e-02   p_joint 4.115207e-04

Outputting figure to mutsig2_images.part000000000165/SPEG.6_9980_4340000_0.00099977_0.052688_0.00041152.png
                gene_name: SPEG
               theta_stop: 0.093 
                    nperm: 4340000 
                     p_ks: 0.00100 
        ci_ks_bounds_left: 0.00097 
       ci_ks_bounds_right: 0.0010 
                   p_cons: 0.053 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.00041 
     ci_joint_bounds_left: 0.00039 
    ci_joint_bounds_right: 0.00043 

Current progress: 33 percent done.
SPG20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.116124e-01	ci left: 1.036391e-01	ci right 1.159892e-01	k: 1097	n:10000
Cons ci ratio: 1.749511e-01	ci left: 4.360497e-02	ci right 5.206094e-02	k: 477	n:10000
KS ci ratio: 5.234648e-02	ci left: 3.497889e-01	ci right 3.686932e-01	k: 3592	n:10000
SPG20   10000 perm   2 sec   (4827 perm/sec)   p_kst 3.592000e-01   p_cons 4.770000e-02   p_joint 1.097000e-01

Joint ci ratio: 8.478879e-02	ci left: 9.244163e-02	ci right 1.006761e-01	k: 1930	n:20000
Cons ci ratio: 1.261564e-01	ci left: 4.313792e-02	ci right 4.899497e-02	k: 920	n:20000
KS ci ratio: 3.861926e-02	ci left: 3.333837e-01	ci right 3.465628e-01	k: 6799	n:20000
SPG20   20000 perm   4 sec   (4971 perm/sec)   p_kst 3.399500e-01   p_cons 4.600000e-02   p_joint 9.650000e-02

Joint ci ratio: 5.644471e-02	ci left: 1.345768e-01	ci right 1.424267e-01	k: 4154	n:30000
Cons ci ratio: 1.007164e-01	ci left: 4.564079e-02	ci right 5.051388e-02	k: 1441	n:30000
KS ci ratio: 3.163110e-02	ci left: 3.332109e-01	ci right 3.439537e-01	k: 10157	n:30000
SPG20   30000 perm   6 sec   (4928 perm/sec)   p_kst 3.385667e-01   p_cons 4.803333e-02   p_joint 1.384667e-01

Joint ci ratio: 4.736019e-02	ci left: 1.427509e-01	ci right 1.497005e-01	k: 5848	n:40000
Cons ci ratio: 8.693079e-02	ci left: 4.626824e-02	ci right 5.049763e-02	k: 1934	n:40000
KS ci ratio: 2.750070e-02	ci left: 3.321928e-01	ci right 3.414809e-01	k: 13473	n:40000
SPG20   40000 perm   8 sec   (4854 perm/sec)   p_kst 3.368250e-01   p_cons 4.835000e-02   p_joint 1.462000e-01

Outputting figure to mutsig2_images.part000000000165/SPG20.6_2033_40000_0.33682_0.04835_0.1462.png
                gene_name: SPG20
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 35 percent done.
SPAST
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.260160e-01	ci left: 2.589329e-02	ci right 3.258470e-02	k: 291	n:10000
Cons ci ratio: 4.233520e-01	ci left: 6.705543e-03	ci right 1.038936e-02	k: 84	n:10000
KS ci ratio: 1.597330e-01	ci left: 5.224686e-02	ci right 6.141345e-02	k: 567	n:10000
SPAST   10000 perm   2 sec   (5755 perm/sec)   p_kst 5.670000e-02   p_cons 8.400000e-03   p_joint 2.910000e-02

Joint ci ratio: 2.067861e-01	ci left: 1.582303e-02	ci right 1.951911e-02	k: 352	n:20000
Cons ci ratio: 3.002544e-01	ci left: 7.182016e-03	ci right 9.763947e-03	k: 168	n:20000
KS ci ratio: 1.162988e-01	ci left: 5.061589e-02	ci right 5.691464e-02	k: 1074	n:20000
SPAST   20000 perm   4 sec   (5248 perm/sec)   p_kst 5.370000e-02   p_cons 8.400000e-03   p_joint 1.760000e-02

Joint ci ratio: 1.318969e-01	ci left: 2.671071e-02	ci right 3.051465e-02	k: 857	n:30000
Cons ci ratio: 2.392788e-01	ci left: 7.805623e-03	ci right 9.957774e-03	k: 265	n:30000
KS ci ratio: 9.414350e-02	ci left: 5.205562e-02	ci right 5.723105e-02	k: 1638	n:30000
SPAST   30000 perm   6 sec   (5019 perm/sec)   p_kst 5.460000e-02   p_cons 8.833333e-03   p_joint 2.856667e-02

Joint ci ratio: 1.436538e-01	ci left: 1.696081e-02	ci right 1.960978e-02	k: 730	n:40000
Cons ci ratio: 2.065380e-01	ci left: 8.002900e-03	ci right 9.869438e-03	k: 356	n:40000
KS ci ratio: 8.157704e-02	ci left: 5.234436e-02	ci right 5.682058e-02	k: 2182	n:40000
SPAST   40000 perm   8 sec   (4858 perm/sec)   p_kst 5.455000e-02   p_cons 8.900000e-03   p_joint 1.825000e-02

Joint ci ratio: 1.470134e-01	ci left: 1.298846e-02	ci right 1.506853e-02	k: 700	n:50000
Cons ci ratio: 1.837494e-01	ci left: 8.190812e-03	ci right 9.866935e-03	k: 450	n:50000
KS ci ratio: 7.279222e-02	ci left: 5.282102e-02	ci right 5.683086e-02	k: 2740	n:50000
SPAST   50000 perm   11 sec   (4735 perm/sec)   p_kst 5.480000e-02   p_cons 9.000000e-03   p_joint 1.400000e-02

Joint ci ratio: 1.426252e-01	ci left: 1.154592e-02	ci right 1.333504e-02	k: 745	n:60000
Cons ci ratio: 1.688770e-01	ci left: 8.148032e-03	ci right 9.666708e-03	k: 533	n:60000
KS ci ratio: 6.664530e-02	ci left: 5.269689e-02	ci right 5.634635e-02	k: 3270	n:60000
SPAST   60000 perm   13 sec   (4667 perm/sec)   p_kst 5.450000e-02   p_cons 8.883333e-03   p_joint 1.241667e-02

Joint ci ratio: 1.397547e-01	ci left: 1.033704e-02	ci right 1.190388e-02	k: 777	n:70000
Cons ci ratio: 1.546067e-01	ci left: 8.396074e-03	ci right 9.816494e-03	k: 636	n:70000
KS ci ratio: 6.169450e-02	ci left: 5.284381e-02	ci right 5.622181e-02	k: 3816	n:70000
SPAST   70000 perm   15 sec   (4598 perm/sec)   p_kst 5.451429e-02   p_cons 9.085714e-03   p_joint 1.110000e-02

Joint ci ratio: 1.300750e-01	ci left: 1.049438e-02	ci right 1.196639e-02	k: 897	n:80000
Cons ci ratio: 1.441228e-01	ci left: 8.501790e-03	ci right 9.834170e-03	k: 732	n:80000
KS ci ratio: 5.759336e-02	ci left: 5.315885e-02	ci right 5.632354e-02	k: 4378	n:80000
SPAST   80000 perm   18 sec   (4526 perm/sec)   p_kst 5.472500e-02   p_cons 9.150000e-03   p_joint 1.121250e-02

Joint ci ratio: 1.213220e-01	ci left: 1.077054e-02	ci right 1.217232e-02	k: 1031	n:90000
Cons ci ratio: 1.361828e-01	ci left: 8.500656e-03	ci right 9.753512e-03	k: 820	n:90000
KS ci ratio: 5.419708e-02	ci left: 5.344258e-02	ci right 5.643063e-02	k: 4943	n:90000
SPAST   90000 perm   20 sec   (4468 perm/sec)   p_kst 5.492222e-02   p_cons 9.111111e-03   p_joint 1.145556e-02

Joint ci ratio: 1.149273e-01	ci left: 1.083866e-02	ci right 1.216990e-02	k: 1149	n:100000
Cons ci ratio: 1.277343e-01	ci left: 8.733709e-03	ci right 9.935009e-03	k: 932	n:100000
KS ci ratio: 5.152184e-02	ci left: 5.330843e-02	ci right 5.613746e-02	k: 5471	n:100000
SPAST   100000 perm   23 sec   (4403 perm/sec)   p_kst 5.471000e-02   p_cons 9.320000e-03   p_joint 1.149000e-02

Joint ci ratio: 1.052064e-01	ci left: 1.180750e-02	ci right 1.312749e-02	k: 1370	n:110000
Cons ci ratio: 1.212722e-01	ci left: 8.838169e-03	ci right 9.987920e-03	k: 1034	n:110000
KS ci ratio: 4.898742e-02	ci left: 5.365995e-02	ci right 5.636357e-02	k: 6050	n:110000
SPAST   110000 perm   25 sec   (4336 perm/sec)   p_kst 5.500000e-02   p_cons 9.400000e-03   p_joint 1.245455e-02

Joint ci ratio: 1.048755e-01	ci left: 1.090441e-02	ci right 1.211937e-02	k: 1380	n:120000
Cons ci ratio: 1.158553e-01	ci left: 8.902211e-03	ci right 1.000502e-02	k: 1133	n:120000
KS ci ratio: 4.684969e-02	ci left: 5.383208e-02	ci right 5.642281e-02	k: 6614	n:120000
SPAST   120000 perm   28 sec   (4277 perm/sec)   p_kst 5.511667e-02   p_cons 9.441667e-03   p_joint 1.150000e-02

Joint ci ratio: 9.391955e-02	ci left: 1.260165e-02	ci right 1.385097e-02	k: 1718	n:130000
Cons ci ratio: 1.113331e-01	ci left: 8.919965e-03	ci right 9.979013e-03	k: 1227	n:130000
KS ci ratio: 4.481107e-02	ci left: 5.434522e-02	ci right 5.684388e-02	k: 7226	n:130000
SPAST   130000 perm   31 sec   (4216 perm/sec)   p_kst 5.558462e-02   p_cons 9.438462e-03   p_joint 1.321538e-02

Joint ci ratio: 9.224134e-02	ci left: 1.214790e-02	ci right 1.332955e-02	k: 1782	n:140000
Cons ci ratio: 1.071387e-01	ci left: 8.963713e-03	ci right 9.985330e-03	k: 1325	n:140000
KS ci ratio: 4.307543e-02	ci left: 5.464570e-02	ci right 5.705845e-02	k: 7818	n:140000
SPAST   140000 perm   34 sec   (4153 perm/sec)   p_kst 5.584286e-02   p_cons 9.464286e-03   p_joint 1.272857e-02

Joint ci ratio: 8.199995e-02	ci left: 1.439093e-02	ci right 1.562792e-02	k: 2250	n:150000
Cons ci ratio: 1.033120e-01	ci left: 9.015267e-03	ci right 1.000383e-02	k: 1425	n:150000
KS ci ratio: 4.143310e-02	ci left: 5.514538e-02	ci right 5.748514e-02	k: 8446	n:150000
SPAST   150000 perm   37 sec   (4096 perm/sec)   p_kst 5.630667e-02   p_cons 9.500000e-03   p_joint 1.500000e-02

Joint ci ratio: 8.095161e-02	ci left: 1.385870e-02	ci right 1.503399e-02	k: 2310	n:160000
Cons ci ratio: 1.003337e-01	ci left: 8.975616e-03	ci right 9.929786e-03	k: 1511	n:160000
KS ci ratio: 4.020530e-02	ci left: 5.495262e-02	ci right 5.721350e-02	k: 8972	n:160000
SPAST   160000 perm   40 sec   (4031 perm/sec)   p_kst 5.607500e-02   p_cons 9.443750e-03   p_joint 1.443750e-02

Joint ci ratio: 7.831544e-02	ci left: 1.395441e-02	ci right 1.509753e-02	k: 2468	n:170000
Cons ci ratio: 9.747597e-02	ci left: 8.963952e-03	ci right 9.888188e-03	k: 1601	n:170000
KS ci ratio: 3.896552e-02	ci left: 5.509236e-02	ci right 5.728752e-02	k: 9551	n:170000
SPAST   170000 perm   43 sec   (3975 perm/sec)   p_kst 5.618235e-02   p_cons 9.417647e-03   p_joint 1.451765e-02

Outputting figure to mutsig2_images.part000000000165/SPAST.5_1919_170000_0.056182_0.0094176_0.014518.png
                gene_name: SPAST
               theta_stop: 0.097 
                    nperm: 170000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.055 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.0094 
      ci_cons_bounds_left: 0.0090 
     ci_cons_bounds_right: 0.0099 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.015 

Current progress: 38 percent done.
SPATS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.254263e-02	ci left: 2.177347e-01	ci right 2.342252e-01	k: 2259	n:10000
Cons ci ratio: 1.765078e-01	ci left: 4.283864e-02	ci right 5.122777e-02	k: 469	n:10000
KS ci ratio: 2.064286e-02	ci left: 7.746878e-01	ci right 7.909471e-01	k: 7829	n:10000
SPATS2   10000 perm   2 sec   (6400 perm/sec)   p_kst 7.829000e-01   p_cons 4.690000e-02   p_joint 2.259000e-01

Joint ci ratio: 6.446006e-02	ci left: 1.509964e-01	ci right 1.611038e-01	k: 3120	n:20000
Cons ci ratio: 1.295086e-01	ci left: 4.095680e-02	ci right 4.667678e-02	k: 875	n:20000
KS ci ratio: 1.451284e-02	ci left: 7.790888e-01	ci right 7.905283e-01	k: 15697	n:20000
SPATS2   20000 perm   3 sec   (5717 perm/sec)   p_kst 7.848500e-01   p_cons 4.375000e-02   p_joint 1.560000e-01

Joint ci ratio: 4.820704e-02	ci left: 1.762283e-01	ci right 1.849669e-01	k: 5417	n:30000
Cons ci ratio: 1.067679e-01	ci left: 4.069970e-02	ci right 4.532266e-02	k: 1289	n:30000
KS ci ratio: 1.195542e-02	ci left: 7.771160e-01	ci right 7.864960e-01	k: 23455	n:30000
SPATS2   30000 perm   5 sec   (5465 perm/sec)   p_kst 7.818333e-01   p_cons 4.296667e-02   p_joint 1.805667e-01

Joint ci ratio: 4.806990e-02	ci left: 1.391126e-01	ci right 1.459893e-01	k: 5701	n:40000
Cons ci ratio: 9.851486e-02	ci left: 3.619623e-02	ci right 3.997121e-02	k: 1522	n:40000
KS ci ratio: 1.050402e-02	ci left: 7.727624e-01	ci right 7.809474e-01	k: 31075	n:40000
SPATS2   40000 perm   8 sec   (5313 perm/sec)   p_kst 7.768750e-01   p_cons 3.805000e-02   p_joint 1.425250e-01

Outputting figure to mutsig2_images.part000000000165/SPATS2.5_1686_40000_0.77687_0.03805_0.14253.png
                gene_name: SPATS2
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 40 percent done.
SPAG8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.704611e-02	ci left: 1.612110e-01	ci right 1.759826e-01	k: 1685	n:10000
Cons ci ratio: 3.249207e-02	ci left: 5.829942e-01	ci right 6.023518e-01	k: 5927	n:10000
KS ci ratio: 1.286084e-01	ci left: 7.950840e-02	ci right 9.053475e-02	k: 849	n:10000
SPAG8   10000 perm   2 sec   (6477 perm/sec)   p_kst 8.490000e-02   p_cons 5.927000e-01   p_joint 1.685000e-01

Joint ci ratio: 6.891355e-02	ci left: 1.344303e-01	ci right 1.440748e-01	k: 2784	n:20000
Cons ci ratio: 2.143078e-02	ci left: 6.191007e-01	ci right 6.325627e-01	k: 12517	n:20000
KS ci ratio: 9.126482e-02	ci left: 8.058298e-02	ci right 8.833833e-02	k: 1688	n:20000
SPAG8   20000 perm   4 sec   (5565 perm/sec)   p_kst 8.440000e-02   p_cons 6.258500e-01   p_joint 1.392000e-01

Outputting figure to mutsig2_images.part000000000165/SPAG8.4_1737_20000_0.0844_0.62585_0.1392.png
                gene_name: SPAG8
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 42 percent done.
SPAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.226381e-02	ci left: 5.864060e-01	ci right 6.057380e-01	k: 5961	n:10000
Cons ci ratio: 6.096528e-02	ci left: 2.834963e-01	ci right 3.014247e-01	k: 2924	n:10000
KS ci ratio: 3.105166e-02	ci left: 6.047779e-01	ci right 6.239554e-01	k: 6144	n:10000
SPAM1   10000 perm   2 sec   (6042 perm/sec)   p_kst 6.144000e-01   p_cons 2.924000e-01   p_joint 5.961000e-01

Outputting figure to mutsig2_images.part000000000165/SPAM1.4_1597_10000_0.6144_0.2924_0.5961.png
                gene_name: SPAM1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 44 percent done.
SPARC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.793680e-02	ci left: 5.064518e-01	ci right 5.261387e-01	k: 5163	n:10000
KS ci ratio: 1.198297e-02	ci left: 9.089508e-01	ci right 9.200063e-01	k: 9146	n:10000
SPARC   10000 perm   1 sec   (6907 perm/sec)   p_kst 9.146000e-01   p_cons 5.163000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPARC.4_948_10000_0.9146_0.5163_1.png
                gene_name: SPARC
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
SPATA18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.319882e-02	ci left: 4.417117e-01	ci right 4.613165e-01	k: 4515	n:10000
KS ci ratio: 1.781757e-02	ci left: 8.212717e-01	ci right 8.361363e-01	k: 8288	n:10000
SPATA18   10000 perm   2 sec   (6423 perm/sec)   p_kst 8.288000e-01   p_cons 4.515000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPATA18.4_1669_10000_0.8288_0.4515_1.png
                gene_name: SPATA18
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
SPATA22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.686115e-02	ci left: 2.471717e-01	ci right 2.643708e-01	k: 2557	n:10000
Cons ci ratio: 9.522390e-02	ci left: 1.379571e-01	ci right 1.518505e-01	k: 1448	n:10000
KS ci ratio: 3.670253e-02	ci left: 5.229629e-01	ci right 5.426180e-01	k: 5328	n:10000
SPATA22   10000 perm   1 sec   (7034 perm/sec)   p_kst 5.328000e-01   p_cons 1.448000e-01   p_joint 2.557000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA22.4_1124_10000_0.5328_0.1448_0.2557.png
                gene_name: SPATA22
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 50 percent done.
SPG7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.691387e-02	ci left: 2.468751e-01	ci right 2.640676e-01	k: 2554	n:10000
Cons ci ratio: 7.630513e-02	ci left: 2.007708e-01	ci right 2.167992e-01	k: 2087	n:10000
KS ci ratio: 8.159911e-02	ci left: 1.797935e-01	ci right 1.951890e-01	k: 1874	n:10000
SPG7   10000 perm   2 sec   (6192 perm/sec)   p_kst 1.874000e-01   p_cons 2.087000e-01   p_joint 2.554000e-01

Outputting figure to mutsig2_images.part000000000165/SPG7.4_2606_10000_0.1874_0.2087_0.2554.png
                gene_name: SPG7
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 52 percent done.
SPACA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.304689e-02	ci left: 1.745794e-01	ci right 1.898062e-01	k: 1821	n:10000
Cons ci ratio: 1.712220e-01	ci left: 4.552219e-02	ci right 5.414247e-02	k: 497	n:10000
KS ci ratio: 1.614530e-02	ci left: 8.479456e-01	ci right 8.618469e-01	k: 8550	n:10000
SPACA3   10000 perm   1 sec   (7317 perm/sec)   p_kst 8.550000e-01   p_cons 4.970000e-02   p_joint 1.821000e-01

Joint ci ratio: 5.695357e-02	ci left: 1.860174e-01	ci right 1.969724e-01	k: 3829	n:20000
Cons ci ratio: 1.223735e-01	ci left: 4.580631e-02	ci right 5.182574e-02	k: 975	n:20000
KS ci ratio: 1.165855e-02	ci left: 8.446715e-01	ci right 8.546266e-01	k: 16994	n:20000
SPACA3   20000 perm   3 sec   (6458 perm/sec)   p_kst 8.497000e-01   p_cons 4.875000e-02   p_joint 1.914500e-01

Joint ci ratio: 4.550576e-02	ci left: 1.937678e-01	ci right 2.028240e-01	k: 5948	n:30000
Cons ci ratio: 1.002789e-01	ci left: 4.603120e-02	ci right 5.092338e-02	k: 1453	n:30000
KS ci ratio: 9.545040e-03	ci left: 8.448979e-01	ci right 8.530344e-01	k: 25470	n:30000
SPACA3   30000 perm   5 sec   (6129 perm/sec)   p_kst 8.490000e-01   p_cons 4.843333e-02   p_joint 1.982667e-01

Joint ci ratio: 3.988653e-02	ci left: 1.906061e-01	ci right 1.983883e-01	k: 7779	n:40000
Cons ci ratio: 8.634624e-02	ci left: 4.688035e-02	ci right 5.113543e-02	k: 1959	n:40000
KS ci ratio: 8.272609e-03	ci left: 8.452515e-01	ci right 8.522978e-01	k: 33952	n:40000
SPACA3   40000 perm   7 sec   (5932 perm/sec)   p_kst 8.488000e-01   p_cons 4.897500e-02   p_joint 1.944750e-01

Outputting figure to mutsig2_images.part000000000165/SPACA3.3_668_40000_0.8488_0.048975_0.19448.png
                gene_name: SPACA3
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 54 percent done.
SPAG11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.052060e-01	ci left: 1.154507e-01	ci right 1.283705e-01	k: 1218	n:10000
Cons ci ratio: 4.138712e-02	ci left: 4.629738e-01	ci right 4.826420e-01	k: 4728	n:10000
KS ci ratio: 1.100976e-01	ci left: 1.062728e-01	ci right 1.187539e-01	k: 1124	n:10000
SPAG11B   10000 perm   1 sec   (6888 perm/sec)   p_kst 1.124000e-01   p_cons 4.728000e-01   p_joint 1.218000e-01

Joint ci ratio: 5.265229e-02	ci left: 2.112542e-01	ci right 2.227282e-01	k: 4339	n:20000
Cons ci ratio: 2.894655e-02	ci left: 4.713556e-01	ci right 4.852507e-01	k: 9566	n:20000
KS ci ratio: 7.794982e-02	ci left: 1.078575e-01	ci right 1.166556e-01	k: 2244	n:20000
SPAG11B   20000 perm   3 sec   (6069 perm/sec)   p_kst 1.122000e-01   p_cons 4.783000e-01   p_joint 2.169500e-01

Outputting figure to mutsig2_images.part000000000165/SPAG11B.3_1078_20000_0.1122_0.4783_0.21695.png
                gene_name: SPAG11B
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 56 percent done.
SPARCL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.669974e-02	ci left: 3.141351e-01	ci right 3.325679e-01	k: 3233	n:10000
Cons ci ratio: 2.947396e-02	ci left: 6.292960e-01	ci right 6.482231e-01	k: 6388	n:10000
KS ci ratio: 7.178385e-02	ci left: 2.213865e-01	ci right 2.379712e-01	k: 2296	n:10000
SPARCL1   10000 perm   2 sec   (6234 perm/sec)   p_kst 2.296000e-01   p_cons 6.388000e-01   p_joint 3.233000e-01

Outputting figure to mutsig2_images.part000000000165/SPARCL1.3_2035_10000_0.2296_0.6388_0.3233.png
                gene_name: SPARCL1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 58 percent done.
SPATA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.422396e-02	ci left: 8.772546e-01	ci right 8.899209e-01	k: 8837	n:10000
Cons ci ratio: 4.965508e-03	ci left: 9.816675e-01	ci right 9.866446e-01	k: 9843	n:10000
KS ci ratio: 3.285669e-02	ci left: 5.775764e-01	ci right 5.969727e-01	k: 5873	n:10000
SPATA1   10000 perm   1 sec   (6740 perm/sec)   p_kst 5.873000e-01   p_cons 9.843000e-01   p_joint 8.837000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA1.3_1428_10000_0.5873_0.9843_0.8837.png
                gene_name: SPATA1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 60 percent done.
SPATA20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.799423e-02	ci left: 3.044128e-01	ci right 3.226959e-01	k: 3135	n:10000
Cons ci ratio: 2.586275e-02	ci left: 6.875840e-01	ci right 7.057013e-01	k: 6967	n:10000
KS ci ratio: 1.261899e-01	ci left: 8.242097e-02	ci right 9.362038e-02	k: 879	n:10000
SPATA20   10000 perm   2 sec   (6058 perm/sec)   p_kst 8.790000e-02   p_cons 6.967000e-01   p_joint 3.135000e-01

Joint ci ratio: 3.921176e-02	ci left: 3.266173e-01	ci right 3.397312e-01	k: 6663	n:20000
Cons ci ratio: 1.831421e-02	ci left: 6.896725e-01	ci right 7.024705e-01	k: 13922	n:20000
KS ci ratio: 8.792318e-02	ci left: 8.641161e-02	ci right 9.440794e-02	k: 1807	n:20000
SPATA20   20000 perm   4 sec   (5379 perm/sec)   p_kst 9.035000e-02   p_cons 6.961000e-01   p_joint 3.331500e-01

Outputting figure to mutsig2_images.part000000000165/SPATA20.3_2477_20000_0.09035_0.6961_0.33315.png
                gene_name: SPATA20
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 62 percent done.
SPATA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.497592e-02	ci left: 5.468981e-01	ci right 5.664689e-01	k: 5567	n:10000
KS ci ratio: 1.994913e-02	ci left: 7.862424e-01	ci right 8.021858e-01	k: 7943	n:10000
SPATA5   10000 perm   2 sec   (5668 perm/sec)   p_kst 7.943000e-01   p_cons 5.567000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPATA5.3_2746_10000_0.7943_0.5567_1.png
                gene_name: SPATA5
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
SPATA5L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.070530e-01	ci left: 3.100901e-02	ci right 3.826537e-02	k: 345	n:10000
Cons ci ratio: 9.947870e-02	ci left: 1.276742e-01	ci right 1.411395e-01	k: 1343	n:10000
KS ci ratio: 2.284450e-01	ci left: 2.532660e-02	ci right 3.195180e-02	k: 285	n:10000
SPATA5L1   10000 perm   2 sec   (6596 perm/sec)   p_kst 2.850000e-02   p_cons 1.343000e-01   p_joint 3.450000e-02

Joint ci ratio: 1.398453e-01	ci left: 3.515098e-02	ci right 4.048447e-02	k: 755	n:20000
Cons ci ratio: 7.004254e-02	ci left: 1.306371e-01	ci right 1.401692e-01	k: 2707	n:20000
KS ci ratio: 1.549680e-01	ci left: 2.859324e-02	ci right 3.344437e-02	k: 619	n:20000
SPATA5L1   20000 perm   3 sec   (5914 perm/sec)   p_kst 3.095000e-02   p_cons 1.353500e-01   p_joint 3.775000e-02

Joint ci ratio: 1.120946e-01	ci left: 3.696711e-02	ci right 4.138937e-02	k: 1174	n:30000
Cons ci ratio: 5.775016e-02	ci left: 1.292752e-01	ci right 1.369960e-01	k: 3993	n:30000
KS ci ratio: 1.270970e-01	ci left: 2.877686e-02	ci right 3.271471e-02	k: 921	n:30000
SPATA5L1   30000 perm   5 sec   (5587 perm/sec)   p_kst 3.070000e-02   p_cons 1.331000e-01   p_joint 3.913333e-02

Joint ci ratio: 7.795902e-02	ci left: 5.712769e-02	ci right 6.178652e-02	k: 2377	n:40000
Cons ci ratio: 5.038682e-02	ci left: 1.281036e-01	ci right 1.347500e-01	k: 5256	n:40000
KS ci ratio: 1.098089e-01	ci left: 2.917713e-02	ci right 3.259143e-02	k: 1234	n:40000
SPATA5L1   40000 perm   7 sec   (5434 perm/sec)   p_kst 3.085000e-02   p_cons 1.314000e-01   p_joint 5.942500e-02

Joint ci ratio: 7.633387e-02	ci left: 4.818438e-02	ci right 5.202807e-02	k: 2504	n:50000
Cons ci ratio: 4.526290e-02	ci left: 1.274797e-01	ci right 1.334033e-01	k: 6521	n:50000
KS ci ratio: 9.837254e-02	ci left: 2.926383e-02	ci right 3.231097e-02	k: 1538	n:50000
SPATA5L1   50000 perm   10 sec   (5240 perm/sec)   p_kst 3.076000e-02   p_cons 1.304200e-01   p_joint 5.008000e-02

Outputting figure to mutsig2_images.part000000000165/SPATA5L1.3_2294_50000_0.03076_0.13042_0.05008.png
                gene_name: SPATA5L1
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.052 

Current progress: 67 percent done.
SPATA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.253351e-02	ci left: 4.493959e-01	ci right 4.690278e-01	k: 4592	n:10000
Cons ci ratio: 8.661395e-02	ci left: 1.625864e-01	ci right 1.774064e-01	k: 1699	n:10000
KS ci ratio: 3.441962e-02	ci left: 5.548147e-01	ci right 5.743477e-01	k: 5646	n:10000
SPATA6   10000 perm   2 sec   (6104 perm/sec)   p_kst 5.646000e-01   p_cons 1.699000e-01   p_joint 4.592000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA6.3_1519_10000_0.5646_0.1699_0.4592.png
                gene_name: SPATA6
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 69 percent done.
SPATA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.794962e-02	ci left: 2.411415e-01	ci right 2.582045e-01	k: 2496	n:10000
Cons ci ratio: 3.878868e-02	ci left: 4.953504e-01	ci right 5.150466e-01	k: 5052	n:10000
KS ci ratio: 1.199415e-01	ci left: 9.068353e-02	ci right 1.023527e-01	k: 964	n:10000
SPATA8   10000 perm   1 sec   (7936 perm/sec)   p_kst 9.640000e-02   p_cons 5.052000e-01   p_joint 2.496000e-01

Joint ci ratio: 5.894151e-02	ci left: 1.757351e-01	ci right 1.864578e-01	k: 3621	n:20000
Cons ci ratio: 2.732026e-02	ci left: 5.002456e-01	ci right 5.141523e-01	k: 10144	n:20000
KS ci ratio: 8.454669e-02	ci left: 9.293210e-02	ci right 1.011855e-01	k: 1940	n:20000
SPATA8   20000 perm   3 sec   (7108 perm/sec)   p_kst 9.700000e-02   p_cons 5.072000e-01   p_joint 1.810500e-01

Outputting figure to mutsig2_images.part000000000165/SPATA8.3_330_20000_0.097_0.5072_0.18105.png
                gene_name: SPATA8
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 71 percent done.
SPATA9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.659038e-02	ci left: 4.047210e-01	ci right 4.241289e-01	k: 4144	n:10000
Cons ci ratio: 6.447185e-02	ci left: 2.611186e-01	ci right 2.786156e-01	k: 2698	n:10000
KS ci ratio: 6.358403e-02	ci left: 2.665620e-01	ci right 2.841691e-01	k: 2753	n:10000
SPATA9   10000 perm   1 sec   (7137 perm/sec)   p_kst 2.753000e-01   p_cons 2.698000e-01   p_joint 4.144000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA9.3_785_10000_0.2753_0.2698_0.4144.png
                gene_name: SPATA9
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 73 percent done.
SPDYA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.004954e-02	ci left: 9.335086e-01	ci right 9.430341e-01	k: 9384	n:10000
Cons ci ratio: 2.415983e-02	ci left: 7.158309e-01	ci right 7.334380e-01	k: 7247	n:10000
KS ci ratio: 5.365600e-03	ci left: 9.788782e-01	ci right 9.842360e-01	k: 9817	n:10000
SPDYA   10000 perm   1 sec   (6981 perm/sec)   p_kst 9.817000e-01   p_cons 7.247000e-01   p_joint 9.384000e-01

Outputting figure to mutsig2_images.part000000000165/SPDYA.3_977_10000_0.9817_0.7247_0.9384.png
                gene_name: SPDYA
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 75 percent done.
SPERT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.037421e-02	ci left: 6.152251e-01	ci right 6.343022e-01	k: 6248	n:10000
Cons ci ratio: 7.428590e-02	ci left: 2.096447e-01	ci right 2.259200e-01	k: 2177	n:10000
KS ci ratio: 2.680273e-02	ci left: 6.721660e-01	ci right 6.905282e-01	k: 6814	n:10000
SPERT   10000 perm   1 sec   (7225 perm/sec)   p_kst 6.814000e-01   p_cons 2.177000e-01   p_joint 6.248000e-01

Outputting figure to mutsig2_images.part000000000165/SPERT.3_1359_10000_0.6814_0.2177_0.6248.png
                gene_name: SPERT
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 77 percent done.
SPACA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.946770e-02	ci left: 2.938030e-01	ci right 3.119119e-01	k: 3028	n:10000
Cons ci ratio: 6.602861e-02	ci left: 2.519183e-01	ci right 2.692214e-01	k: 2605	n:10000
KS ci ratio: 5.108585e-02	ci left: 3.610234e-01	ci right 3.800520e-01	k: 3705	n:10000
SPACA1   10000 perm   1 sec   (7616 perm/sec)   p_kst 3.705000e-01   p_cons 2.605000e-01   p_joint 3.028000e-01

Outputting figure to mutsig2_images.part000000000165/SPACA1.2_913_10000_0.3705_0.2605_0.3028.png
                gene_name: SPACA1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 79 percent done.
SPAG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.642083e-02	ci left: 6.784124e-01	ci right 6.966782e-01	k: 6876	n:10000
Cons ci ratio: 1.580538e-02	ci left: 8.532484e-01	ci right 8.669411e-01	k: 8602	n:10000
KS ci ratio: 5.282739e-02	ci left: 3.456147e-01	ci right 3.644699e-01	k: 3550	n:10000
SPAG4   10000 perm   1 sec   (7201 perm/sec)   p_kst 3.550000e-01   p_cons 8.602000e-01   p_joint 6.876000e-01

Outputting figure to mutsig2_images.part000000000165/SPAG4.2_1362_10000_0.355_0.8602_0.6876.png
                gene_name: SPAG4
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 81 percent done.
SPANXC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.627528e-02	ci left: 1.353117e-01	ci right 1.490975e-01	k: 1421	n:10000
Cons ci ratio: 4.252495e-02	ci left: 4.494958e-01	ci right 4.691280e-01	k: 4593	n:10000
KS ci ratio: 3.313660e-01	ci left: 1.151417e-02	ci right 1.617538e-02	k: 137	n:10000
SPANXC   10000 perm   1 sec   (7645 perm/sec)   p_kst 1.370000e-02   p_cons 4.593000e-01   p_joint 1.421000e-01

Joint ci ratio: 6.683640e-02	ci left: 1.418232e-01	ci right 1.516797e-01	k: 2934	n:20000
Cons ci ratio: 2.999058e-02	ci left: 4.537231e-01	ci right 4.675883e-01	k: 9213	n:20000
KS ci ratio: 2.309462e-01	ci left: 1.255904e-02	ci right 1.588439e-02	k: 283	n:20000
SPANXC   20000 perm   3 sec   (6746 perm/sec)   p_kst 1.415000e-02   p_cons 4.606500e-01   p_joint 1.467000e-01

Joint ci ratio: 5.470677e-02	ci left: 1.421209e-01	ci right 1.501478e-01	k: 4383	n:30000
Cons ci ratio: 2.454133e-02	ci left: 4.539147e-01	ci right 4.652264e-01	k: 13787	n:30000
KS ci ratio: 1.878983e-01	ci left: 1.295527e-02	ci right 1.567332e-02	k: 428	n:30000
SPANXC   30000 perm   5 sec   (6445 perm/sec)   p_kst 1.426667e-02   p_cons 4.595667e-01   p_joint 1.461000e-01

Joint ci ratio: 4.748387e-02	ci left: 1.421074e-01	ci right 1.490442e-01	k: 5822	n:40000
Cons ci ratio: 2.128547e-02	ci left: 4.539324e-01	ci right 4.637236e-01	k: 18353	n:40000
KS ci ratio: 1.614416e-01	ci left: 1.335138e-02	ci right 1.571987e-02	k: 580	n:40000
SPANXC   40000 perm   6 sec   (6216 perm/sec)   p_kst 1.450000e-02   p_cons 4.588250e-01   p_joint 1.455500e-01

Joint ci ratio: 4.246666e-02	ci left: 1.424993e-01	ci right 1.487019e-01	k: 7279	n:50000
Cons ci ratio: 1.902103e-02	ci left: 4.549044e-01	ci right 4.636603e-01	k: 22964	n:50000
KS ci ratio: 1.457533e-01	ci left: 1.321978e-02	ci right 1.531717e-02	k: 712	n:50000
SPANXC   50000 perm   8 sec   (6016 perm/sec)   p_kst 1.424000e-02   p_cons 4.592800e-01   p_joint 1.455800e-01

Joint ci ratio: 3.875365e-02	ci left: 1.428528e-01	ci right 1.485148e-01	k: 8740	n:60000
Cons ci ratio: 1.734277e-02	ci left: 4.558892e-01	ci right 4.638814e-01	k: 27593	n:60000
KS ci ratio: 1.320865e-01	ci left: 1.351033e-02	ci right 1.543705e-02	k: 867	n:60000
SPANXC   60000 perm   10 sec   (5882 perm/sec)   p_kst 1.445000e-02   p_cons 4.598833e-01   p_joint 1.456667e-01

Joint ci ratio: 3.587035e-02	ci left: 1.431224e-01	ci right 1.483642e-01	k: 10201	n:70000
Cons ci ratio: 1.603597e-02	ci left: 4.568164e-01	ci right 4.642154e-01	k: 32236	n:70000
KS ci ratio: 1.227608e-01	ci left: 1.347508e-02	ci right 1.525122e-02	k: 1004	n:70000
SPANXC   70000 perm   12 sec   (5745 perm/sec)   p_kst 1.434286e-02   p_cons 4.605143e-01   p_joint 1.457286e-01

Joint ci ratio: 3.360501e-02	ci left: 1.429143e-01	ci right 1.478114e-01	k: 11628	n:80000
Cons ci ratio: 1.500150e-02	ci left: 4.570163e-01	ci right 4.639365e-01	k: 36838	n:80000
KS ci ratio: 1.153208e-01	ci left: 1.341583e-02	ci right 1.506968e-02	k: 1138	n:80000
SPANXC   80000 perm   14 sec   (5552 perm/sec)   p_kst 1.422500e-02   p_cons 4.604750e-01   p_joint 1.453500e-01

Joint ci ratio: 3.171522e-02	ci left: 1.428049e-01	ci right 1.474180e-01	k: 13059	n:90000
Cons ci ratio: 1.416788e-02	ci left: 4.563621e-01	ci right 4.628850e-01	k: 41366	n:90000
KS ci ratio: 1.083989e-01	ci left: 1.354529e-02	ci right 1.510847e-02	k: 1288	n:90000
SPANXC   90000 perm   17 sec   (5430 perm/sec)   p_kst 1.431111e-02   p_cons 4.596222e-01   p_joint 1.451000e-01

Joint ci ratio: 3.014741e-02	ci left: 1.424355e-01	ci right 1.468052e-01	k: 14461	n:100000
Cons ci ratio: 1.345148e-02	ci left: 4.561376e-01	ci right 4.623248e-01	k: 45923	n:100000
KS ci ratio: 1.031738e-01	ci left: 1.349530e-02	ci right 1.497307e-02	k: 1422	n:100000
SPANXC   100000 perm   19 sec   (5308 perm/sec)   p_kst 1.422000e-02   p_cons 4.592300e-01   p_joint 1.446100e-01

Joint ci ratio: 2.881669e-02	ci left: 1.419211e-01	ci right 1.460796e-01	k: 15839	n:110000
Cons ci ratio: 1.281478e-02	ci left: 4.566969e-01	ci right 4.625961e-01	k: 50561	n:110000
KS ci ratio: 9.892843e-02	ci left: 1.337606e-02	ci right 1.477701e-02	k: 1547	n:110000
SPANXC   110000 perm   21 sec   (5217 perm/sec)   p_kst 1.406364e-02   p_cons 4.596455e-01   p_joint 1.439909e-01

Outputting figure to mutsig2_images.part000000000165/SPANXC.2_302_110000_0.014064_0.45965_0.14399.png
                gene_name: SPANXC
               theta_stop: 0.099 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 83 percent done.
SPANXN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.417999e-02	ci left: 4.306386e-01	ci right 4.501961e-01	k: 4404	n:10000
Cons ci ratio: 3.353899e-02	ci left: 5.675467e-01	ci right 5.870083e-01	k: 5773	n:10000
KS ci ratio: 4.411732e-02	ci left: 4.313368e-01	ci right 4.508976e-01	k: 4411	n:10000
SPANXN4   10000 perm   1 sec   (8366 perm/sec)   p_kst 4.411000e-01   p_cons 5.773000e-01   p_joint 4.404000e-01

Outputting figure to mutsig2_images.part000000000165/SPANXN4.2_308_10000_0.4411_0.5773_0.4404.png
                gene_name: SPANXN4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 85 percent done.
SPATA19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.480061e-02	ci left: 2.591396e-01	ci right 2.765958e-01	k: 2678	n:10000
Cons ci ratio: 1.595611e-02	ci left: 8.509025e-01	ci right 8.646883e-01	k: 8579	n:10000
KS ci ratio: 8.921899e-02	ci left: 1.545332e-01	ci right 1.690644e-01	k: 1617	n:10000
SPATA19   10000 perm   1 sec   (7751 perm/sec)   p_kst 1.617000e-01   p_cons 8.579000e-01   p_joint 2.678000e-01

Outputting figure to mutsig2_images.part000000000165/SPATA19.2_528_10000_0.1617_0.8579_0.2678.png
                gene_name: SPATA19
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 88 percent done.
SPATA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.041810e-02	ci left: 7.784370e-01	ci right 7.945958e-01	k: 7866	n:10000
KS ci ratio: 2.706847e-02	ci left: 6.678349e-01	ci right 6.862618e-01	k: 6771	n:10000
SPATA2   10000 perm   1 sec   (7020 perm/sec)   p_kst 6.771000e-01   p_cons 7.866000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPATA2.2_1571_10000_0.6771_0.7866_1.png
                gene_name: SPATA2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
SPDYC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.289119e-02	ci left: 7.370442e-01	ci right 7.542125e-01	k: 7457	n:10000
KS ci ratio: 1.774222e-02	ci left: 8.224919e-01	ci right 8.373154e-01	k: 8300	n:10000
SPDYC   10000 perm   1 sec   (7732 perm/sec)   p_kst 8.300000e-01   p_cons 7.457000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPDYC.2_910_10000_0.83_0.7457_1.png
                gene_name: SPDYC
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
SPDYE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.585987e-01	ci left: 3.541199e-03	ci right 6.359123e-03	k: 48	n:10000
Cons ci ratio: 7.677370e-01	ci left: 1.618501e-03	ci right 3.688296e-03	k: 25	n:10000
KS ci ratio: 1.482583e-02	ci left: 8.682565e-01	ci right 8.813243e-01	k: 8749	n:10000
SPDYE1   10000 perm   1 sec   (7465 perm/sec)   p_kst 8.749000e-01   p_cons 2.500000e-03   p_joint 4.800000e-03

Joint ci ratio: 3.067269e-01	ci left: 6.858491e-03	ci right 9.387653e-03	k: 161	n:20000
Cons ci ratio: 5.139616e-01	ci left: 2.159255e-03	ci right 3.690949e-03	k: 57	n:20000
KS ci ratio: 1.028040e-02	ci left: 8.745016e-01	ci right 8.835879e-01	k: 17582	n:20000
SPDYE1   20000 perm   3 sec   (6578 perm/sec)   p_kst 8.791000e-01   p_cons 2.850000e-03   p_joint 8.050000e-03

Joint ci ratio: 3.893910e-01	ci left: 2.712931e-03	ci right 4.052764e-03	k: 100	n:30000
Cons ci ratio: 4.614141e-01	ci left: 1.848835e-03	ci right 2.984304e-03	k: 71	n:30000
KS ci ratio: 8.390989e-03	ci left: 8.754250e-01	ci right 8.828347e-01	k: 26375	n:30000
SPDYE1   30000 perm   5 sec   (6241 perm/sec)   p_kst 8.791667e-01   p_cons 2.366667e-03   p_joint 3.333333e-03

Joint ci ratio: 3.027011e-01	ci left: 3.543725e-03	ci right 4.829897e-03	k: 166	n:40000
Cons ci ratio: 3.934821e-01	ci left: 1.989462e-03	ci right 2.984965e-03	k: 98	n:40000
KS ci ratio: 7.295436e-03	ci left: 8.750814e-01	ci right 8.815136e-01	k: 35133	n:40000
SPDYE1   40000 perm   7 sec   (6032 perm/sec)   p_kst 8.783250e-01   p_cons 2.450000e-03   p_joint 4.150000e-03

Joint ci ratio: 2.661428e-01	ci left: 3.745401e-03	ci right 4.913300e-03	k: 215	n:50000
Cons ci ratio: 3.515861e-01	ci left: 2.044905e-03	ci right 2.934431e-03	k: 123	n:50000
KS ci ratio: 6.513107e-03	ci left: 8.758266e-01	ci right 8.815694e-01	k: 43936	n:50000
SPDYE1   50000 perm   9 sec   (5858 perm/sec)   p_kst 8.787200e-01   p_cons 2.460000e-03   p_joint 4.300000e-03

Joint ci ratio: 2.407260e-01	ci left: 3.870500e-03	ci right 4.944972e-03	k: 263	n:60000
Cons ci ratio: 3.186008e-01	ci left: 2.116325e-03	ci right 2.932983e-03	k: 150	n:60000
KS ci ratio: 5.944284e-03	ci left: 8.761283e-01	ci right 8.813683e-01	k: 52726	n:60000
SPDYE1   60000 perm   10 sec   (5722 perm/sec)   p_kst 8.787667e-01   p_cons 2.500000e-03   p_joint 4.383333e-03

Joint ci ratio: 1.783069e-01	ci left: 6.245529e-03	ci right 7.481595e-03	k: 479	n:70000
Cons ci ratio: 2.893937e-01	ci left: 2.236365e-03	ci right 3.005789e-03	k: 182	n:70000
KS ci ratio: 5.496176e-03	ci left: 8.766044e-01	ci right 8.814498e-01	k: 61533	n:70000
SPDYE1   70000 perm   13 sec   (5590 perm/sec)   p_kst 8.790429e-01   p_cons 2.600000e-03   p_joint 6.842857e-03

Joint ci ratio: 1.599692e-01	ci left: 6.853786e-03	ci right 8.057348e-03	k: 595	n:80000
Cons ci ratio: 2.695061e-01	ci left: 2.282329e-03	ci right 3.004493e-03	k: 210	n:80000
KS ci ratio: 5.139197e-03	ci left: 8.768461e-01	ci right 8.813764e-01	k: 70330	n:80000
SPDYE1   80000 perm   15 sec   (5473 perm/sec)   p_kst 8.791250e-01   p_cons 2.625000e-03   p_joint 7.437500e-03

Joint ci ratio: 1.439003e-01	ci left: 7.589018e-03	ci right 8.776343e-03	k: 735	n:90000
Cons ci ratio: 1.619621e-01	ci left: 5.942734e-03	ci right 7.000565e-03	k: 581	n:90000
KS ci ratio: 4.861274e-03	ci left: 8.762694e-01	ci right 8.805506e-01	k: 79058	n:90000
SPDYE1   90000 perm   17 sec   (5361 perm/sec)   p_kst 8.784222e-01   p_cons 6.455556e-03   p_joint 8.166667e-03

Joint ci ratio: 1.356636e-01	ci left: 7.717996e-03	ci right 8.850803e-03	k: 827	n:100000
Cons ci ratio: 1.524298e-01	ci left: 6.069008e-03	ci right 7.079931e-03	k: 656	n:100000
KS ci ratio: 4.598668e-03	ci left: 8.769929e-01	ci right 8.810451e-01	k: 87903	n:100000
SPDYE1   100000 perm   19 sec   (5191 perm/sec)   p_kst 8.790300e-01   p_cons 6.560000e-03   p_joint 8.270000e-03

Joint ci ratio: 1.298398e-01	ci left: 7.684320e-03	ci right 8.760033e-03	k: 903	n:110000
Cons ci ratio: 1.457121e-01	ci left: 6.059897e-03	ci right 7.020944e-03	k: 718	n:110000
KS ci ratio: 4.387891e-03	ci left: 8.769301e-01	ci right 8.807954e-01	k: 96676	n:110000
SPDYE1   110000 perm   22 sec   (5084 perm/sec)   p_kst 8.788727e-01   p_cons 6.527273e-03   p_joint 8.209091e-03

Joint ci ratio: 1.250289e-01	ci left: 7.616751e-03	ci right 8.640567e-03	k: 974	n:120000
Cons ci ratio: 1.400819e-01	ci left: 6.028990e-03	ci right 6.945105e-03	k: 777	n:120000
KS ci ratio: 4.210237e-03	ci left: 8.765459e-01	ci right 8.802524e-01	k: 105409	n:120000
SPDYE1   120000 perm   24 sec   (4972 perm/sec)   p_kst 8.784083e-01   p_cons 6.475000e-03   p_joint 8.116667e-03

Joint ci ratio: 1.200810e-01	ci left: 7.642288e-03	ci right 8.625996e-03	k: 1056	n:130000
Cons ci ratio: 1.348955e-01	ci left: 6.018313e-03	ci right 6.896228e-03	k: 838	n:130000
KS ci ratio: 4.048712e-03	ci left: 8.764253e-01	ci right 8.799885e-01	k: 114168	n:130000
SPDYE1   130000 perm   27 sec   (4892 perm/sec)   p_kst 8.782154e-01   p_cons 6.446154e-03   p_joint 8.123077e-03

Joint ci ratio: 1.166101e-01	ci left: 7.539998e-03	ci right 8.480551e-03	k: 1120	n:140000
Cons ci ratio: 1.307583e-01	ci left: 5.961320e-03	ci right 6.802179e-03	k: 892	n:140000
KS ci ratio: 3.902494e-03	ci left: 8.764323e-01	ci right 8.798663e-01	k: 122942	n:140000
SPDYE1   140000 perm   29 sec   (4808 perm/sec)   p_kst 8.781571e-01   p_cons 6.371429e-03   p_joint 8.000000e-03

Joint ci ratio: 1.119568e-01	ci left: 7.652589e-03	ci right 8.566578e-03	k: 1215	n:150000
Cons ci ratio: 1.251960e-01	ci left: 6.086640e-03	ci right 6.905945e-03	k: 973	n:150000
KS ci ratio: 3.768469e-03	ci left: 8.765879e-01	ci right 8.799041e-01	k: 131738	n:150000
SPDYE1   150000 perm   32 sec   (4724 perm/sec)   p_kst 8.782533e-01   p_cons 6.486667e-03   p_joint 8.100000e-03

Joint ci ratio: 1.045708e-01	ci left: 8.250754e-03	ci right 9.167182e-03	k: 1392	n:160000
Cons ci ratio: 1.215705e-01	ci left: 6.063590e-03	ci right 6.854454e-03	k: 1032	n:160000
KS ci ratio: 3.652376e-03	ci left: 8.764303e-01	ci right 8.796434e-01	k: 140487	n:160000
SPDYE1   160000 perm   35 sec   (4623 perm/sec)   p_kst 8.780438e-01   p_cons 6.450000e-03   p_joint 8.700000e-03

Joint ci ratio: 1.009020e-01	ci left: 8.355754e-03	ci right 9.249353e-03	k: 1495	n:170000
Cons ci ratio: 1.175941e-01	ci left: 6.112072e-03	ci right 6.881374e-03	k: 1103	n:170000
KS ci ratio: 3.540056e-03	ci left: 8.766773e-01	ci right 8.797921e-01	k: 149301	n:170000
SPDYE1   170000 perm   37 sec   (4549 perm/sec)   p_kst 8.782412e-01   p_cons 6.488235e-03   p_joint 8.794118e-03

Joint ci ratio: 9.777925e-02	ci left: 8.417059e-03	ci right 9.287759e-03	k: 1592	n:180000
Cons ci ratio: 1.136922e-01	ci left: 6.187932e-03	ci right 6.939204e-03	k: 1180	n:180000
KS ci ratio: 3.436239e-03	ci left: 8.769763e-01	ci right 8.800004e-01	k: 158129	n:180000
SPDYE1   180000 perm   40 sec   (4474 perm/sec)   p_kst 8.784944e-01   p_cons 6.555556e-03   p_joint 8.844444e-03

Joint ci ratio: 9.524280e-02	ci left: 8.415762e-03	ci right 9.262483e-03	k: 1678	n:190000
Cons ci ratio: 1.106425e-01	ci left: 6.199876e-03	ci right 6.931091e-03	k: 1246	n:190000
KS ci ratio: 3.342851e-03	ci left: 8.771284e-01	ci right 8.800706e-01	k: 166935	n:190000
SPDYE1   190000 perm   43 sec   (4406 perm/sec)   p_kst 8.786053e-01   p_cons 6.557895e-03   p_joint 8.831579e-03

Joint ci ratio: 9.313390e-02	ci left: 8.370896e-03	ci right 9.193436e-03	k: 1755	n:200000
Cons ci ratio: 1.081579e-01	ci left: 6.171942e-03	ci right 6.882474e-03	k: 1304	n:200000
KS ci ratio: 3.259661e-03	ci left: 8.770702e-01	ci right 8.799388e-01	k: 175702	n:200000
SPDYE1   200000 perm   46 sec   (4341 perm/sec)   p_kst 8.785100e-01   p_cons 6.520000e-03   p_joint 8.775000e-03

Joint ci ratio: 9.068616e-02	ci left: 8.418927e-03	ci right 9.223291e-03	k: 1851	n:210000
Cons ci ratio: 1.052521e-01	ci left: 6.216390e-03	ci right 6.911622e-03	k: 1377	n:210000
KS ci ratio: 3.181180e-03	ci left: 8.770999e-01	ci right 8.798992e-01	k: 184486	n:210000
SPDYE1   210000 perm   49 sec   (4274 perm/sec)   p_kst 8.785048e-01   p_cons 6.557143e-03   p_joint 8.814286e-03

Joint ci ratio: 8.835318e-02	ci left: 8.476185e-03	ci right 9.264110e-03	k: 1950	n:220000
Cons ci ratio: 1.027827e-01	ci left: 6.230451e-03	ci right 6.909920e-03	k: 1444	n:220000
KS ci ratio: 3.108438e-03	ci left: 8.771047e-01	ci right 8.798399e-01	k: 193265	n:220000
SPDYE1   220000 perm   52 sec   (4214 perm/sec)   p_kst 8.784773e-01   p_cons 6.563636e-03   p_joint 8.863636e-03

Joint ci ratio: 8.619143e-02	ci left: 8.528705e-03	ci right 9.301138e-03	k: 2049	n:230000
Cons ci ratio: 1.001466e-01	ci left: 6.285858e-03	ci right 6.952754e-03	k: 1521	n:230000
KS ci ratio: 3.038178e-03	ci left: 8.772714e-01	ci right 8.799451e-01	k: 202081	n:230000
SPDYE1   230000 perm   55 sec   (4147 perm/sec)   p_kst 8.786130e-01   p_cons 6.613043e-03   p_joint 8.908696e-03

Joint ci ratio: 8.424030e-02	ci left: 8.564825e-03	ci right 9.322106e-03	k: 2145	n:240000
Cons ci ratio: 9.782658e-02	ci left: 6.320590e-03	ci right 6.974744e-03	k: 1594	n:240000
KS ci ratio: 2.975261e-03	ci left: 8.772239e-01	ci right 8.798419e-01	k: 210849	n:240000
SPDYE1   240000 perm   59 sec   (4091 perm/sec)   p_kst 8.785375e-01   p_cons 6.641667e-03   p_joint 8.937500e-03

Outputting figure to mutsig2_images.part000000000165/SPDYE1.2_1035_240000_0.87854_0.0066417_0.0089375.png
                gene_name: SPDYE1
               theta_stop: 0.098 
                    nperm: 240000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.0066 
      ci_cons_bounds_left: 0.0063 
     ci_cons_bounds_right: 0.0070 
                  p_joint: 0.0089 
     ci_joint_bounds_left: 0.0086 
    ci_joint_bounds_right: 0.0093 

Current progress: 94 percent done.
SPESP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.585788e-02	ci left: 8.524324e-01	ci right 8.661576e-01	k: 8594	n:10000
Cons ci ratio: 2.572211e-02	ci left: 6.899028e-01	ci right 7.079812e-01	k: 6990	n:10000
KS ci ratio: 3.903769e-02	ci left: 4.921509e-01	ci right 5.118480e-01	k: 5020	n:10000
SPESP1   10000 perm   1 sec   (7793 perm/sec)   p_kst 5.020000e-01   p_cons 6.990000e-01   p_joint 8.594000e-01

Outputting figure to mutsig2_images.part000000000165/SPESP1.2_1061_10000_0.502_0.699_0.8594.png
                gene_name: SPESP1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 96 percent done.
SPI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.501509e-02	ci left: 7.016014e-01	ci right 7.194758e-01	k: 7106	n:10000
Cons ci ratio: 3.022542e-02	ci left: 6.175362e-01	ci right 6.365898e-01	k: 6271	n:10000
KS ci ratio: 7.314920e-02	ci left: 2.148731e-01	ci right 2.312886e-01	k: 2230	n:10000
SPI1   10000 perm   1 sec   (7103 perm/sec)   p_kst 2.230000e-01   p_cons 6.271000e-01   p_joint 7.106000e-01

Outputting figure to mutsig2_images.part000000000165/SPI1.2_836_10000_0.223_0.6271_0.7106.png
                gene_name: SPI1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 98 percent done.
SPIN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.047280e-02	ci left: 7.775249e-01	ci right 7.937083e-01	k: 7857	n:10000
KS ci ratio: 8.286976e-03	ci left: 9.531520e-01	ci right 9.611789e-01	k: 9573	n:10000
SPIN3   10000 perm   1 sec   (7284 perm/sec)   p_kst 9.573000e-01   p_cons 7.857000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000165/SPIN3.2_781_10000_0.9573_0.7857_1.png
                gene_name: SPIN3
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000165
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 165 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1558>
Subject: Job 9894156: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1558>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000166> was used as the working directory.
Started at Sat Oct  6 00:30:55 2012
Results reported at Sat Oct  6 00:42:08 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000166.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000166.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 166  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000166.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    714.12 sec.
    Max Memory :      3663 MB
    Max Swap   :      5947 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
166
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 166
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 166: processing genes 14876 - 14965
Calculating significance of each gene.
Using projection method.
14876	SPINK6	1
14877	SPINK7	2.023303e-02
14878	SPINK8	1
14879	SPINK9	1
14880	SPINLW1	1
14881	SPINT1	8.777162e-01
14882	SPINT2	7.834269e-01
14883	SPINT4	1
14884	SPIRE1	7.462988e-01
14885	SPIRE2	9.559835e-01
14886	SPN	3.340062e-01
14887	SPNS1	8.844542e-01
14888	SPNS2	7.769602e-01
14889	SPNS3	4.847549e-01
14890	SPO11	8.123568e-01
14891	SPOCD1	7.147333e-01
14892	SPOCK1	5.319800e-01
14893	SPOCK2	8.141400e-01
14894	SPOCK3	3.017758e-02
14895	SPON1	2.566891e-01
14896	SPON2	3.441823e-01
14897	SPOP	4.263254e-01
14898	SPOPL	3.749075e-01
14899	SPP1	5.464236e-01
14900	SPP2	6.664337e-01
14901	SPPL2A	3.543912e-01
14902	SPPL2B	8.223517e-01
14903	SPPL3	5.891424e-01
14904	SPR	1
14905	SPRED1	1.210226e-02
14906	SPRED2	1.873465e-01
14907	SPRED3	7.377445e-01
14908	SPRR1A	1.286326e-01
14909	SPRR1B	1
14910	SPRR2A	2.211853e-01
14911	SPRR2B	2.851009e-01
14912	SPRR2D	1
14913	SPRR2E	4.794406e-03
14914	SPRR2F	9.891157e-02
14915	SPRR2G	1
14916	SPRR3	8.183858e-02
14917	SPRR4	1
14918	SPRY1	9.818144e-02
14919	SPRY2	1
14920	SPRY4	5.339671e-01
14921	SPRYD3	8.493618e-01
14922	SPRYD4	7.396795e-01
14923	SPRYD5	1.629575e-02
14924	SPSB1	1
14925	SPSB2	1
14926	SPSB3	1
14927	SPSB4	2.150443e-01
14928	SPTA1	3.213927e-02
14929	SPTAN1	7.055303e-01
14930	SPTB	3.996957e-01
14931	SPTBN1	8.264384e-01
14932	SPTBN2	8.901149e-01
14933	SPTBN4	9.050677e-01
14934	SPTBN5	9.999887e-01
14935	SPTLC1	4.986908e-01
14936	SPTLC2	4.637660e-01
14937	SPTLC3	1.954008e-01
14938	SPTY2D1	5.489587e-01
14939	SPZ1	1.672461e-01
14940	SQLE	8.091353e-01
14941	SQRDL	8.381745e-01
14942	SQSTM1	7.851166e-01
14943	SR140	8.695459e-01
14944	SRA1	1
14945	SRBD1	7.450503e-01
14946	SRC	3.920624e-01
14947	SRCAP	5.040559e-01
14948	SRCIN1	6.156366e-01
14949	SRCRB4D	5.711670e-01
14950	SRD5A1	5.554900e-01
14951	SRD5A2	3.834504e-01
14952	SRD5A3	6.437771e-01
14953	SREBF1	9.765006e-01
14954	SREBF2	9.530678e-01
14955	SRF	3.356188e-01
14956	SRFBP1	6.133774e-01
14957	SRGAP1	1.367741e-01
14958	SRGAP2	7.185993e-01
14959	SRGAP3	8.345335e-01
14960	SRGN	5.464464e-01
14961	SRI	6.249998e-01
14962	SRL	9.279149e-01
14963	SRM	1
14964	SRMS	8.375035e-01
14965	SRP14	1
Done

Running MutSig 2:
Scatter job 166: processing genes 14876 - 14965
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SPTA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.030713e-02	ci left: 4.761593e-01	ci right 4.958489e-01	k: 4860	n:10000
Cons ci ratio: 8.423637e-02	ci left: 1.704491e-01	ci right 1.855389e-01	k: 1779	n:10000
KS ci ratio: 2.138797e-02	ci left: 7.622312e-01	ci right 7.788109e-01	k: 7706	n:10000
SPTA1   10000 perm   4 sec   (2612 perm/sec)   p_kst 7.706000e-01   p_cons 1.779000e-01   p_joint 4.860000e-01

Outputting figure to mutsig2_images.part000000000166/SPTA1.22_7468_10000_0.7706_0.1779_0.486.png
                gene_name: SPTA1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 2 percent done.
SRCAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.098002e-02	ci left: 2.833972e-01	ci right 3.013239e-01	k: 2923	n:10000
Cons ci ratio: 5.468901e-02	ci left: 3.300180e-01	ci right 3.486756e-01	k: 3393	n:10000
KS ci ratio: 7.656007e-02	ci left: 1.996866e-01	ci right 2.156840e-01	k: 2076	n:10000
SRCAP   10000 perm   4 sec   (2717 perm/sec)   p_kst 2.076000e-01   p_cons 3.393000e-01   p_joint 2.923000e-01

Outputting figure to mutsig2_images.part000000000166/SRCAP.15_9821_10000_0.2076_0.3393_0.2923.png
                gene_name: SRCAP
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 4 percent done.
SPTAN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.920559e-02	ci left: 2.344220e-01	ci right 2.513280e-01	k: 2428	n:10000
Cons ci ratio: 2.748407e-02	ci left: 6.610882e-01	ci right 6.796124e-01	k: 6704	n:10000
KS ci ratio: 1.145642e-01	ci left: 9.876499e-02	ci right 1.108663e-01	k: 1047	n:10000
SPTAN1   10000 perm   4 sec   (2811 perm/sec)   p_kst 1.047000e-01   p_cons 6.704000e-01   p_joint 2.428000e-01

Joint ci ratio: 4.710513e-02	ci left: 2.511034e-01	ci right 2.632673e-01	k: 5143	n:20000
Cons ci ratio: 1.939751e-02	ci left: 6.646901e-01	ci right 6.777601e-01	k: 13425	n:20000
KS ci ratio: 8.116213e-02	ci left: 1.001949e-01	ci right 1.087205e-01	k: 2088	n:20000
SPTAN1   20000 perm   8 sec   (2616 perm/sec)   p_kst 1.044000e-01   p_cons 6.712500e-01   p_joint 2.571500e-01

Outputting figure to mutsig2_images.part000000000166/SPTAN1.13_7658_20000_0.1044_0.67125_0.25715.png
                gene_name: SPTAN1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 6 percent done.
SPTB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.486315e-02	ci left: 7.041236e-01	ci right 7.219521e-01	k: 7131	n:10000
Cons ci ratio: 5.800771e-02	ci left: 3.043136e-01	ci right 3.225952e-01	k: 3134	n:10000
KS ci ratio: 1.139078e-02	ci left: 9.167762e-01	ci right 9.273764e-01	k: 9222	n:10000
SPTB   10000 perm   3 sec   (3031 perm/sec)   p_kst 9.222000e-01   p_cons 3.134000e-01   p_joint 7.131000e-01

Outputting figure to mutsig2_images.part000000000166/SPTB.13_7196_10000_0.9222_0.3134_0.7131.png
                gene_name: SPTB
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 8 percent done.
SPTBN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.020807e-02	ci left: 2.886490e-01	ci right 3.066690e-01	k: 2976	n:10000
KS ci ratio: 9.363244e-03	ci left: 9.414924e-01	ci right 9.504455e-01	k: 9461	n:10000
SPTBN1   10000 perm   4 sec   (2615 perm/sec)   p_kst 9.461000e-01   p_cons 2.976000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SPTBN1.11_7435_10000_0.9461_0.2976_1.png
                gene_name: SPTBN1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
SPTBN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.371625e-02	ci left: 1.418777e-01	ci right 1.559275e-01	k: 1488	n:10000
Cons ci ratio: 9.180449e-02	ci left: 1.470751e-01	ci right 1.613269e-01	k: 1541	n:10000
KS ci ratio: 6.007874e-02	ci left: 2.895409e-01	ci right 3.075765e-01	k: 2985	n:10000
SPTBN2   10000 perm   3 sec   (3266 perm/sec)   p_kst 2.985000e-01   p_cons 1.541000e-01   p_joint 1.488000e-01

Outputting figure to mutsig2_images.part000000000166/SPTBN2.11_7317_10000_0.2985_0.1541_0.1488.png
                gene_name: SPTBN2
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 12 percent done.
SRGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.252495e-02	ci left: 4.494958e-01	ci right 4.691280e-01	k: 4593	n:10000
Cons ci ratio: 4.208421e-03	ci left: 9.864298e-01	ci right 9.906784e-01	k: 9887	n:10000
KS ci ratio: 5.853744e-02	ci left: 3.004459e-01	ci right 3.186652e-01	k: 3095	n:10000
SRGAP1   10000 perm   2 sec   (4225 perm/sec)   p_kst 3.095000e-01   p_cons 9.887000e-01   p_joint 4.593000e-01

Outputting figure to mutsig2_images.part000000000166/SRGAP1.9_3346_10000_0.3095_0.9887_0.4593.png
                gene_name: SRGAP1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 14 percent done.
SPOCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.169744e-02	ci left: 5.949377e-01	ci right 6.142014e-01	k: 6046	n:10000
Cons ci ratio: 5.545381e-02	ci left: 3.238620e-01	ci right 3.424353e-01	k: 3331	n:10000
KS ci ratio: 4.012206e-02	ci left: 4.784575e-01	ci right 4.981493e-01	k: 4883	n:10000
SPOCD1   10000 perm   2 sec   (4263 perm/sec)   p_kst 4.883000e-01   p_cons 3.331000e-01   p_joint 6.046000e-01

Outputting figure to mutsig2_images.part000000000166/SPOCD1.7_3711_10000_0.4883_0.3331_0.6046.png
                gene_name: SPOCD1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 16 percent done.
SPOCK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.121254e-02	ci left: 7.651672e-01	ci right 7.816732e-01	k: 7735	n:10000
Cons ci ratio: 4.413521e-02	ci left: 4.311373e-01	ci right 4.506972e-01	k: 4409	n:10000
KS ci ratio: 2.934637e-02	ci left: 6.313068e-01	ci right 6.502111e-01	k: 6408	n:10000
SPOCK3   10000 perm   2 sec   (5898 perm/sec)   p_kst 6.408000e-01   p_cons 4.409000e-01   p_joint 7.735000e-01

Outputting figure to mutsig2_images.part000000000166/SPOCK3.7_1355_10000_0.6408_0.4409_0.7735.png
                gene_name: SPOCK3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 18 percent done.
SPRED1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.406212e-01	ci left: 6.700893e-02	ci right 7.724202e-02	k: 720	n:10000
Cons ci ratio: 9.776290e-02	ci left: 1.316879e-01	ci right 1.453234e-01	k: 1384	n:10000
KS ci ratio: 1.108764e-01	ci left: 1.049071e-01	ci right 1.173205e-01	k: 1110	n:10000
SPRED1   10000 perm   2 sec   (4809 perm/sec)   p_kst 1.110000e-01   p_cons 1.384000e-01   p_joint 7.200000e-02

Joint ci ratio: 9.808669e-02	ci left: 7.031150e-02	ci right 7.761295e-02	k: 1478	n:20000
Cons ci ratio: 6.981906e-02	ci left: 1.313760e-01	ci right 1.409301e-01	k: 2722	n:20000
KS ci ratio: 7.892335e-02	ci left: 1.054499e-01	ci right 1.141639e-01	k: 2195	n:20000
SPRED1   20000 perm   5 sec   (4318 perm/sec)   p_kst 1.097500e-01   p_cons 1.361000e-01   p_joint 7.390000e-02

Outputting figure to mutsig2_images.part000000000166/SPRED1.7_1363_20000_0.10975_0.1361_0.0739.png
                gene_name: SPRED1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.074 
     ci_joint_bounds_left: 0.070 
    ci_joint_bounds_right: 0.078 

Current progress: 20 percent done.
SPTBN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.202335e-02	ci left: 4.553853e-01	ci right 4.750350e-01	k: 4652	n:10000
Cons ci ratio: 7.600619e-02	ci left: 2.020522e-01	ci right 2.181170e-01	k: 2100	n:10000
KS ci ratio: 2.279465e-02	ci left: 7.386615e-01	ci right 7.557942e-01	k: 7473	n:10000
SPTBN4   10000 perm   3 sec   (3145 perm/sec)   p_kst 7.473000e-01   p_cons 2.100000e-01   p_joint 4.652000e-01

Outputting figure to mutsig2_images.part000000000166/SPTBN4.7_7929_10000_0.7473_0.21_0.4652.png
                gene_name: SPTBN4
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 22 percent done.
SPRED2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.198116e-02	ci left: 4.558845e-01	ci right 4.755355e-01	k: 4657	n:10000
Cons ci ratio: 3.956422e-02	ci left: 4.854532e-01	ci right 5.051496e-01	k: 4953	n:10000
KS ci ratio: 5.321015e-02	ci left: 3.423355e-01	ci right 3.611510e-01	k: 3517	n:10000
SPRED2   10000 perm   2 sec   (5775 perm/sec)   p_kst 3.517000e-01   p_cons 4.953000e-01   p_joint 4.657000e-01

Outputting figure to mutsig2_images.part000000000166/SPRED2.6_1302_10000_0.3517_0.4953_0.4657.png
                gene_name: SPRED2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 24 percent done.
SPTY2D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.171224e-02	ci left: 4.590794e-01	ci right 4.787387e-01	k: 4689	n:10000
Cons ci ratio: 3.786094e-02	ci left: 5.074522e-01	ci right 5.271377e-01	k: 5173	n:10000
KS ci ratio: 5.404887e-02	ci left: 3.352819e-01	ci right 3.540087e-01	k: 3446	n:10000
SPTY2D1   10000 perm   2 sec   (5183 perm/sec)   p_kst 3.446000e-01   p_cons 5.173000e-01   p_joint 4.689000e-01

Outputting figure to mutsig2_images.part000000000166/SPTY2D1.6_2082_10000_0.3446_0.5173_0.4689.png
                gene_name: SPTY2D1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 27 percent done.
SRBD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.122226e-02	ci left: 6.021669e-01	ci right 6.213680e-01	k: 6118	n:10000
Cons ci ratio: 3.314893e-02	ci left: 5.732631e-01	ci right 5.926885e-01	k: 5830	n:10000
KS ci ratio: 3.874217e-02	ci left: 4.959503e-01	ci right 5.156463e-01	k: 5058	n:10000
SRBD1   10000 perm   3 sec   (3735 perm/sec)   p_kst 5.058000e-01   p_cons 5.830000e-01   p_joint 6.118000e-01

Outputting figure to mutsig2_images.part000000000166/SRBD1.6_3068_10000_0.5058_0.583_0.6118.png
                gene_name: SRBD1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 29 percent done.
SPTBN5
Processing conservation and coverage...
89% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.898055e-02	ci left: 2.356076e-01	ci right 2.525417e-01	k: 2440	n:10000
Cons ci ratio: 5.381047e-02	ci left: 3.372686e-01	ci right 3.560208e-01	k: 3466	n:10000
KS ci ratio: 6.721419e-02	ci left: 2.451943e-01	ci right 2.623493e-01	k: 2537	n:10000
SPTBN5   10000 perm   4 sec   (2500 perm/sec)   p_kst 2.537000e-01   p_cons 3.466000e-01   p_joint 2.440000e-01

Outputting figure to mutsig2_images.part000000000166/SPTBN5.5_11188_10000_0.2537_0.3466_0.244.png
                gene_name: SPTBN5
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 31 percent done.
SPTLC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.369301e-02	ci left: 8.850350e-01	ci right 8.973360e-01	k: 8913	n:10000
KS ci ratio: 2.350688e-02	ci left: 7.267375e-01	ci right 7.441252e-01	k: 7355	n:10000
SPTLC3   10000 perm   2 sec   (5017 perm/sec)   p_kst 7.355000e-01   p_cons 8.913000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SPTLC3.5_1707_10000_0.7355_0.8913_1.png
                gene_name: SPTLC3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
SRCIN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.976591e-02	ci left: 7.892847e-01	ci right 8.051418e-01	k: 7973	n:10000
KS ci ratio: 3.210328e-02	ci left: 5.888147e-01	ci right 6.081279e-01	k: 5985	n:10000
SRCIN1   10000 perm   2 sec   (4762 perm/sec)   p_kst 5.985000e-01   p_cons 7.973000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SRCIN1.5_3628_10000_0.5985_0.7973_1.png
                gene_name: SRCIN1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
SPON1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.703560e-03	ci left: 9.833923e-01	ci right 9.881185e-01	k: 9859	n:10000
KS ci ratio: 2.191363e-02	ci left: 7.534265e-01	ci right 7.702207e-01	k: 7619	n:10000
SPON1   10000 perm   3 sec   (3969 perm/sec)   p_kst 7.619000e-01   p_cons 9.859000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SPON1.4_2487_10000_0.7619_0.9859_1.png
                gene_name: SPON1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
SPRYD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.234648e-02	ci left: 3.497889e-01	ci right 3.686932e-01	k: 3592	n:10000
Cons ci ratio: 5.992136e-02	ci left: 2.906312e-01	ci right 3.086857e-01	k: 2996	n:10000
KS ci ratio: 5.603282e-02	ci left: 3.192957e-01	ci right 3.378043e-01	k: 3285	n:10000
SPRYD5   10000 perm   2 sec   (5260 perm/sec)   p_kst 3.285000e-01   p_cons 2.996000e-01   p_joint 3.592000e-01

Outputting figure to mutsig2_images.part000000000166/SPRYD5.4_1383_10000_0.3285_0.2996_0.3592.png
                gene_name: SPRYD5
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 39 percent done.
SPTLC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.858565e-02	ci left: 3.846041e-01	ci right 4.038576e-01	k: 3942	n:10000
Cons ci ratio: 3.535299e-02	ci left: 5.415883e-01	ci right 5.611817e-01	k: 5514	n:10000
KS ci ratio: 7.368076e-02	ci left: 2.124066e-01	ci right 2.287565e-01	k: 2205	n:10000
SPTLC1   10000 perm   2 sec   (5104 perm/sec)   p_kst 2.205000e-01   p_cons 5.514000e-01   p_joint 3.942000e-01

Outputting figure to mutsig2_images.part000000000166/SPTLC1.4_1491_10000_0.2205_0.5514_0.3942.png
                gene_name: SPTLC1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 41 percent done.
SPZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.534585e-02	ci left: 5.416885e-01	ci right 5.612815e-01	k: 5515	n:10000
Cons ci ratio: 3.353899e-02	ci left: 5.675467e-01	ci right 5.870083e-01	k: 5773	n:10000
KS ci ratio: 6.390416e-02	ci left: 2.645824e-01	ci right 2.821498e-01	k: 2733	n:10000
SPZ1   10000 perm   2 sec   (4813 perm/sec)   p_kst 2.733000e-01   p_cons 5.773000e-01   p_joint 5.515000e-01

Outputting figure to mutsig2_images.part000000000166/SPZ1.4_1297_10000_0.2733_0.5773_0.5515.png
                gene_name: SPZ1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 43 percent done.
SRFBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.403689e-02	ci left: 4.322344e-01	ci right 4.517994e-01	k: 4420	n:10000
Cons ci ratio: 3.208325e-02	ci left: 5.891158e-01	ci right 6.084267e-01	k: 5988	n:10000
KS ci ratio: 5.482342e-02	ci left: 3.289257e-01	ci right 3.475686e-01	k: 3382	n:10000
SRFBP1   10000 perm   2 sec   (5652 perm/sec)   p_kst 3.382000e-01   p_cons 5.988000e-01   p_joint 4.420000e-01

Outputting figure to mutsig2_images.part000000000166/SRFBP1.4_1322_10000_0.3382_0.5988_0.442.png
                gene_name: SRFBP1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 45 percent done.
SRGAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.821473e-02	ci left: 6.493117e-01	ci right 6.679958e-01	k: 6587	n:10000
KS ci ratio: 2.130935e-02	ci left: 7.635473e-01	ci right 7.800941e-01	k: 7719	n:10000
SRGAP3   10000 perm   2 sec   (4810 perm/sec)   p_kst 7.719000e-01   p_cons 6.587000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SRGAP3.4_3423_10000_0.7719_0.6587_1.png
                gene_name: SRGAP3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
SPIRE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.237387e-01	ci left: 8.552985e-02	ci right 9.690958e-02	k: 911	n:10000
Cons ci ratio: 3.093700e-01	ci left: 1.335536e-02	ci right 1.833248e-02	k: 157	n:10000
KS ci ratio: 3.455982e-02	ci left: 5.528102e-01	ci right 5.723533e-01	k: 5626	n:10000
SPIRE1   10000 perm   2 sec   (5519 perm/sec)   p_kst 5.626000e-01   p_cons 1.570000e-02   p_joint 9.110000e-02

Joint ci ratio: 6.166182e-02	ci left: 1.628915e-01	ci right 1.733052e-01	k: 3361	n:20000
Cons ci ratio: 2.160014e-01	ci left: 1.444865e-02	ci right 1.799402e-02	k: 323	n:20000
KS ci ratio: 2.434728e-02	ci left: 5.575443e-01	ci right 5.713369e-01	k: 11289	n:20000
SPIRE1   20000 perm   4 sec   (4830 perm/sec)   p_kst 5.644500e-01   p_cons 1.615000e-02   p_joint 1.680500e-01

Joint ci ratio: 7.797314e-02	ci left: 7.466235e-02	ci right 8.075306e-02	k: 2330	n:30000
Cons ci ratio: 1.780490e-01	ci left: 1.448301e-02	ci right 1.734519e-02	k: 476	n:30000
KS ci ratio: 1.993722e-02	ci left: 5.573980e-01	ci right 5.686565e-01	k: 16891	n:30000
SPIRE1   30000 perm   7 sec   (4581 perm/sec)   p_kst 5.630333e-01   p_cons 1.586667e-02   p_joint 7.766667e-02

Joint ci ratio: 7.429040e-02	ci left: 6.265236e-02	ci right 6.751101e-02	k: 2602	n:40000
Cons ci ratio: 1.551904e-01	ci left: 1.448047e-02	ci right 1.694056e-02	k: 627	n:40000
KS ci ratio: 1.726836e-02	ci left: 5.580972e-01	ci right 5.678437e-01	k: 22519	n:40000
SPIRE1   40000 perm   9 sec   (4415 perm/sec)   p_kst 5.629750e-01   p_cons 1.567500e-02   p_joint 6.505000e-02

Joint ci ratio: 6.256312e-02	ci left: 7.051786e-02	ci right 7.509188e-02	k: 3639	n:50000
Cons ci ratio: 1.388068e-01	ci left: 1.460925e-02	ci right 1.680750e-02	k: 784	n:50000
KS ci ratio: 1.545339e-02	ci left: 5.583585e-01	ci right 5.670742e-01	k: 28136	n:50000
SPIRE1   50000 perm   12 sec   (4290 perm/sec)   p_kst 5.627200e-01   p_cons 1.568000e-02   p_joint 7.278000e-02

Joint ci ratio: 5.385599e-02	ci left: 7.894410e-02	ci right 8.332985e-02	k: 4867	n:60000
Cons ci ratio: 1.362054e-01	ci left: 1.268849e-02	ci right 1.455899e-02	k: 816	n:60000
KS ci ratio: 1.411332e-02	ci left: 5.585193e-01	ci right 5.664746e-01	k: 33750	n:60000
SPIRE1   60000 perm   14 sec   (4185 perm/sec)   p_kst 5.625000e-01   p_cons 1.360000e-02   p_joint 8.111667e-02

Joint ci ratio: 5.150410e-02	ci left: 7.445673e-02	ci right 7.840704e-02	k: 5349	n:70000
Cons ci ratio: 1.253815e-01	ci left: 1.290731e-02	ci right 1.464762e-02	k: 963	n:70000
KS ci ratio: 1.305961e-02	ci left: 5.590728e-01	ci right 5.664363e-01	k: 39393	n:70000
SPIRE1   70000 perm   17 sec   (4088 perm/sec)   p_kst 5.627571e-01   p_cons 1.375714e-02   p_joint 7.641429e-02

Joint ci ratio: 4.651477e-02	ci left: 7.963776e-02	ci right 8.344265e-02	k: 6522	n:80000
Cons ci ratio: 1.175390e-01	ci left: 1.290592e-02	ci right 1.452963e-02	k: 1096	n:80000
KS ci ratio: 1.221635e-02	ci left: 5.593042e-01	ci right 5.661913e-01	k: 45020	n:80000
SPIRE1   80000 perm   20 sec   (3996 perm/sec)   p_kst 5.627500e-01   p_cons 1.370000e-02   p_joint 8.152500e-02

Joint ci ratio: 4.192854e-02	ci left: 8.666317e-02	ci right 9.038563e-02	k: 7966	n:90000
Cons ci ratio: 1.118845e-01	ci left: 1.270218e-02	ci right 1.421830e-02	k: 1210	n:90000
KS ci ratio: 1.153032e-02	ci left: 5.589624e-01	ci right 5.654558e-01	k: 50599	n:90000
SPIRE1   90000 perm   23 sec   (3923 perm/sec)   p_kst 5.622111e-01   p_cons 1.344444e-02   p_joint 8.851111e-02

Joint ci ratio: 4.081290e-02	ci left: 8.273366e-02	ci right 8.619049e-02	k: 8445	n:100000
Cons ci ratio: 1.055701e-01	ci left: 1.288153e-02	ci right 1.432689e-02	k: 1359	n:100000
KS ci ratio: 1.094889e-02	ci left: 5.586680e-01	ci right 5.648284e-01	k: 56175	n:100000
SPIRE1   100000 perm   26 sec   (3850 perm/sec)   p_kst 5.617500e-01   p_cons 1.359000e-02   p_joint 8.445000e-02

Joint ci ratio: 3.971410e-02	ci left: 7.974552e-02	ci right 8.298569e-02	k: 8949	n:110000
Cons ci ratio: 1.007255e-01	ci left: 1.289725e-02	ci right 1.427403e-02	k: 1493	n:110000
KS ci ratio: 1.043349e-02	ci left: 5.590892e-01	ci right 5.649621e-01	k: 61823	n:110000
SPIRE1   110000 perm   29 sec   (3782 perm/sec)   p_kst 5.620273e-01   p_cons 1.357273e-02   p_joint 8.135455e-02

Joint ci ratio: 3.571979e-02	ci left: 8.957685e-02	ci right 9.284294e-02	k: 10944	n:120000
Cons ci ratio: 9.664249e-02	ci left: 1.287094e-02	ci right 1.418606e-02	k: 1622	n:120000
KS ci ratio: 9.985305e-03	ci left: 5.594124e-01	ci right 5.650346e-01	k: 67467	n:120000
SPIRE1   120000 perm   32 sec   (3713 perm/sec)   p_kst 5.622250e-01   p_cons 1.351667e-02   p_joint 9.120000e-02

Outputting figure to mutsig2_images.part000000000166/SPIRE1.3_2339_120000_0.56222_0.013517_0.0912.png
                gene_name: SPIRE1
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.093 

Current progress: 49 percent done.
SPNS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.504163e-02	ci left: 8.649871e-01	ci right 8.781956e-01	k: 8717	n:10000
Cons ci ratio: 3.358024e-02	ci left: 5.669450e-01	ci right 5.864103e-01	k: 5767	n:10000
KS ci ratio: 3.516050e-02	ci left: 5.442931e-01	ci right 5.638753e-01	k: 5541	n:10000
SPNS3   10000 perm   2 sec   (4512 perm/sec)   p_kst 5.541000e-01   p_cons 5.767000e-01   p_joint 8.717000e-01

Outputting figure to mutsig2_images.part000000000166/SPNS3.3_1587_10000_0.5541_0.5767_0.8717.png
                gene_name: SPNS3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 51 percent done.
SPPL2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.233084e-02	ci left: 5.854025e-01	ci right 6.047421e-01	k: 5951	n:10000
Cons ci ratio: 6.626932e-02	ci left: 2.505337e-01	ci right 2.678068e-01	k: 2591	n:10000
KS ci ratio: 3.993788e-02	ci left: 4.807559e-01	ci right 5.004496e-01	k: 4906	n:10000
SPPL2A   10000 perm   2 sec   (6157 perm/sec)   p_kst 4.906000e-01   p_cons 2.591000e-01   p_joint 5.951000e-01

Outputting figure to mutsig2_images.part000000000166/SPPL2A.3_1623_10000_0.4906_0.2591_0.5951.png
                gene_name: SPPL2A
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 53 percent done.
SPRY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.123029e-01	ci left: 1.024689e-01	ci right 1.147601e-01	k: 1085	n:10000
Cons ci ratio: 2.191527e-01	ci left: 2.759554e-02	ci right 3.448123e-02	k: 309	n:10000
KS ci ratio: 3.382843e-02	ci left: 5.633354e-01	ci right 5.828220e-01	k: 5731	n:10000
SPRY1   10000 perm   2 sec   (6304 perm/sec)   p_kst 5.731000e-01   p_cons 3.090000e-02   p_joint 1.085000e-01

Joint ci ratio: 1.100038e-01	ci left: 5.640686e-02	ci right 6.302186e-02	k: 1193	n:20000
Cons ci ratio: 1.522032e-01	ci left: 2.965219e-02	ci right 3.458507e-02	k: 641	n:20000
KS ci ratio: 2.416213e-02	ci left: 5.613007e-01	ci right 5.750794e-01	k: 11364	n:20000
SPRY1   20000 perm   4 sec   (5250 perm/sec)   p_kst 5.682000e-01   p_cons 3.205000e-02   p_joint 5.965000e-02

Joint ci ratio: 6.681196e-02	ci left: 9.948382e-02	ci right 1.063933e-01	k: 3087	n:30000
Cons ci ratio: 1.248109e-01	ci left: 2.984322e-02	ci right 3.384812e-02	k: 954	n:30000
KS ci ratio: 1.966980e-02	ci left: 5.640407e-01	ci right 5.752791e-01	k: 17090	n:30000
SPRY1   30000 perm   6 sec   (5010 perm/sec)   p_kst 5.696667e-01   p_cons 3.180000e-02   p_joint 1.029000e-01

Joint ci ratio: 5.709374e-02	ci left: 1.024070e-01	ci right 1.084504e-01	k: 4216	n:40000
Cons ci ratio: 1.079731e-01	ci left: 3.017504e-02	ci right 3.364335e-02	k: 1275	n:40000
KS ci ratio: 1.703530e-02	ci left: 5.647805e-01	ci right 5.745094e-01	k: 22786	n:40000
SPRY1   40000 perm   8 sec   (4711 perm/sec)   p_kst 5.696500e-01   p_cons 3.187500e-02   p_joint 1.054000e-01

Joint ci ratio: 4.822524e-02	ci left: 1.138981e-01	ci right 1.195465e-01	k: 5835	n:50000
Cons ci ratio: 9.733335e-02	ci left: 2.988863e-02	ci right 3.296609e-02	k: 1570	n:50000
KS ci ratio: 1.528515e-02	ci left: 5.637444e-01	ci right 5.724477e-01	k: 28405	n:50000
SPRY1   50000 perm   11 sec   (4611 perm/sec)   p_kst 5.681000e-01   p_cons 3.140000e-02   p_joint 1.167000e-01

Outputting figure to mutsig2_images.part000000000166/SPRY1.3_964_50000_0.5681_0.0314_0.1167.png
                gene_name: SPRY1
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 55 percent done.
SR140
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.871812e-02	ci left: 3.833100e-01	ci right 4.025524e-01	k: 3929	n:10000
Cons ci ratio: 1.541967e-01	ci left: 5.600212e-02	ci right 6.545578e-02	k: 606	n:10000
KS ci ratio: 1.167382e-02	ci left: 9.130677e-01	ci right 9.238870e-01	k: 9186	n:10000
SR140   10000 perm   2 sec   (5034 perm/sec)   p_kst 9.186000e-01   p_cons 6.060000e-02   p_joint 3.929000e-01

Joint ci ratio: 2.477841e-02	ci left: 5.488811e-01	ci right 5.627027e-01	k: 11116	n:20000
Cons ci ratio: 1.079979e-01	ci left: 5.845301e-02	ci right 6.517508e-02	k: 1235	n:20000
KS ci ratio: 8.244670e-03	ci left: 9.148773e-01	ci right 9.225005e-01	k: 18375	n:20000
SR140   20000 perm   4 sec   (4494 perm/sec)   p_kst 9.187500e-01   p_cons 6.175000e-02   p_joint 5.558000e-01

Joint ci ratio: 2.785006e-02	ci left: 3.921552e-01	ci right 4.032646e-01	k: 11931	n:30000
Cons ci ratio: 8.923694e-02	ci left: 5.773026e-02	ci right 6.315525e-02	k: 1812	n:30000
KS ci ratio: 6.698932e-03	ci left: 9.163300e-01	ci right 9.225218e-01	k: 27584	n:30000
SR140   30000 perm   7 sec   (4291 perm/sec)   p_kst 9.194667e-01   p_cons 6.040000e-02   p_joint 3.977000e-01

Outputting figure to mutsig2_images.part000000000166/SR140.3_3202_30000_0.91947_0.0604_0.3977.png
                gene_name: SR140
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 57 percent done.
SRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.844174e-02	ci left: 3.011400e-01	ci right 3.193706e-01	k: 3102	n:10000
Cons ci ratio: 3.842359e-01	ci left: 8.324320e-03	ci right 1.236857e-02	k: 102	n:10000
KS ci ratio: 3.854894e-02	ci left: 4.984503e-01	ci right 5.181449e-01	k: 5083	n:10000
SRC   10000 perm   2 sec   (4998 perm/sec)   p_kst 5.083000e-01   p_cons 1.020000e-02   p_joint 3.102000e-01

Joint ci ratio: 7.668576e-02	ci left: 1.111014e-01	ci right 1.200107e-01	k: 2310	n:20000
Cons ci ratio: 2.924988e-01	ci left: 7.598793e-03	ci right 1.024694e-02	k: 177	n:20000
KS ci ratio: 2.689989e-02	ci left: 5.079968e-01	ci right 5.218988e-01	k: 10299	n:20000
SRC   20000 perm   4 sec   (4739 perm/sec)   p_kst 5.149500e-01   p_cons 8.850000e-03   p_joint 1.155000e-01

Joint ci ratio: 6.979843e-02	ci left: 9.180311e-02	ci right 9.847553e-02	k: 2853	n:30000
Cons ci ratio: 2.415802e-01	ci left: 7.648923e-03	ci right 9.781191e-03	k: 260	n:30000
KS ci ratio: 2.193417e-02	ci left: 5.099602e-01	ci right 5.213034e-01	k: 15469	n:30000
SRC   30000 perm   7 sec   (4612 perm/sec)   p_kst 5.156333e-01   p_cons 8.666667e-03   p_joint 9.510000e-02

Joint ci ratio: 4.822289e-02	ci left: 1.383455e-01	ci right 1.452066e-01	k: 5670	n:40000
Cons ci ratio: 2.092154e-01	ci left: 7.789524e-03	ci right 9.632863e-03	k: 347	n:40000
KS ci ratio: 1.822910e-02	ci left: 5.312730e-01	ci right 5.410718e-01	k: 21447	n:40000
SRC   40000 perm   9 sec   (4512 perm/sec)   p_kst 5.361750e-01   p_cons 8.675000e-03   p_joint 1.417500e-01

Joint ci ratio: 3.721297e-02	ci left: 1.782294e-01	ci right 1.850076e-01	k: 9080	n:50000
Cons ci ratio: 1.852053e-01	ci left: 8.057227e-03	ci right 9.720544e-03	k: 443	n:50000
KS ci ratio: 1.630324e-02	ci left: 5.318369e-01	ci right 5.405989e-01	k: 26811	n:50000
SRC   50000 perm   11 sec   (4422 perm/sec)   p_kst 5.362200e-01   p_cons 8.860000e-03   p_joint 1.816000e-01

Joint ci ratio: 3.426339e-02	ci left: 1.760061e-01	ci right 1.821583e-01	k: 10744	n:60000
Cons ci ratio: 1.709897e-01	ci left: 7.940509e-03	ci right 9.440928e-03	k: 520	n:60000
KS ci ratio: 1.487045e-02	ci left: 5.326333e-01	ci right 5.406298e-01	k: 32198	n:60000
SRC   60000 perm   14 sec   (4338 perm/sec)   p_kst 5.366333e-01   p_cons 8.666667e-03   p_joint 1.790667e-01

Joint ci ratio: 3.256488e-02	ci left: 1.686999e-01	ci right 1.742988e-01	k: 12004	n:70000
Cons ci ratio: 1.604272e-01	ci left: 7.778350e-03	ci right 9.148578e-03	k: 591	n:70000
KS ci ratio: 1.374896e-02	ci left: 5.335977e-01	ci right 5.409992e-01	k: 37611	n:70000
SRC   70000 perm   17 sec   (4177 perm/sec)   p_kst 5.373000e-01   p_cons 8.442857e-03   p_joint 1.714857e-01

Joint ci ratio: 2.925918e-02	ci left: 1.805620e-01	ci right 1.859360e-01	k: 14659	n:80000
Cons ci ratio: 1.508064e-01	ci left: 7.743103e-03	ci right 9.017935e-03	k: 669	n:80000
KS ci ratio: 1.288075e-02	ci left: 5.330745e-01	ci right 5.399979e-01	k: 42923	n:80000
SRC   80000 perm   19 sec   (4108 perm/sec)   p_kst 5.365375e-01   p_cons 8.362500e-03   p_joint 1.832375e-01

Joint ci ratio: 3.273048e-02	ci left: 1.352121e-01	ci right 1.397224e-01	k: 12371	n:90000
Cons ci ratio: 1.426356e-01	ci left: 7.728324e-03	ci right 8.925914e-03	k: 748	n:90000
KS ci ratio: 1.213282e-02	ci left: 5.337356e-01	ci right 5.402620e-01	k: 48330	n:90000
SRC   90000 perm   22 sec   (4004 perm/sec)   p_kst 5.370000e-01   p_cons 8.311111e-03   p_joint 1.374556e-01

Joint ci ratio: 3.021951e-02	ci left: 1.418492e-01	ci right 1.462115e-01	k: 14402	n:100000
Cons ci ratio: 1.350890e-01	ci left: 7.785643e-03	ci right 8.923150e-03	k: 834	n:100000
KS ci ratio: 1.149819e-02	ci left: 5.344237e-01	ci right 5.406141e-01	k: 53752	n:100000
SRC   100000 perm   26 sec   (3918 perm/sec)   p_kst 5.375200e-01   p_cons 8.340000e-03   p_joint 1.440200e-01

Joint ci ratio: 2.887314e-02	ci left: 1.414421e-01	ci right 1.455949e-01	k: 15786	n:110000
Cons ci ratio: 1.294793e-01	ci left: 7.728311e-03	ci right 8.806947e-03	k: 908	n:110000
KS ci ratio: 1.098341e-02	ci left: 5.336477e-01	ci right 5.395504e-01	k: 59026	n:110000
SRC   110000 perm   29 sec   (3854 perm/sec)   p_kst 5.366000e-01   p_cons 8.254545e-03   p_joint 1.435091e-01

Joint ci ratio: 2.765817e-02	ci left: 1.414049e-01	ci right 1.453790e-01	k: 17206	n:120000
Cons ci ratio: 1.230098e-01	ci left: 7.875208e-03	ci right 8.915427e-03	k: 1006	n:120000
KS ci ratio: 1.051882e-02	ci left: 5.336319e-01	ci right 5.392830e-01	k: 64375	n:120000
SRC   120000 perm   32 sec   (3792 perm/sec)   p_kst 5.364583e-01   p_cons 8.383333e-03   p_joint 1.433833e-01

Joint ci ratio: 2.656223e-02	ci left: 1.415831e-01	ci right 1.454021e-01	k: 18653	n:130000
Cons ci ratio: 1.187294e-01	ci left: 7.821431e-03	ci right 8.816072e-03	k: 1080	n:130000
KS ci ratio: 1.011251e-02	ci left: 5.334307e-01	ci right 5.388600e-01	k: 69699	n:130000
SRC   130000 perm   35 sec   (3704 perm/sec)   p_kst 5.361462e-01   p_cons 8.307692e-03   p_joint 1.434846e-01

Joint ci ratio: 2.696808e-02	ci left: 1.293574e-01	ci right 1.329007e-01	k: 18357	n:140000
Cons ci ratio: 1.138280e-01	ci left: 7.921620e-03	ci right 8.884621e-03	k: 1175	n:140000
KS ci ratio: 9.741370e-03	ci left: 5.336978e-01	ci right 5.389293e-01	k: 75084	n:140000
SRC   140000 perm   40 sec   (3509 perm/sec)   p_kst 5.363143e-01   p_cons 8.392857e-03   p_joint 1.311214e-01

Joint ci ratio: 2.589199e-02	ci left: 1.308345e-01	ci right 1.342731e-01	k: 19882	n:150000
Cons ci ratio: 1.101006e-01	ci left: 7.918390e-03	ci right 8.847430e-03	k: 1256	n:150000
KS ci ratio: 9.410829e-03	ci left: 5.337990e-01	ci right 5.388529e-01	k: 80449	n:150000
SRC   150000 perm   44 sec   (3405 perm/sec)   p_kst 5.363267e-01   p_cons 8.373333e-03   p_joint 1.325467e-01

Joint ci ratio: 2.523573e-02	ci left: 1.293876e-01	ci right 1.327007e-01	k: 20966	n:160000
Cons ci ratio: 1.063170e-01	ci left: 7.976862e-03	ci right 8.878587e-03	k: 1347	n:160000
KS ci ratio: 9.105736e-03	ci left: 5.342216e-01	ci right 5.391145e-01	k: 85867	n:160000
SRC   160000 perm   48 sec   (3316 perm/sec)   p_kst 5.366688e-01   p_cons 8.418750e-03   p_joint 1.310375e-01

Joint ci ratio: 2.486217e-02	ci left: 1.259881e-01	ci right 1.291657e-01	k: 21687	n:170000
Cons ci ratio: 1.031880e-01	ci left: 7.983080e-03	ci right 8.857338e-03	k: 1430	n:170000
KS ci ratio: 8.881590e-03	ci left: 5.316134e-01	ci right 5.363619e-01	k: 90778	n:170000
SRC   170000 perm   52 sec   (3272 perm/sec)   p_kst 5.339882e-01   p_cons 8.411765e-03   p_joint 1.275706e-01

Joint ci ratio: 2.502334e-02	ci left: 1.184745e-01	ci right 1.214822e-01	k: 21595	n:180000
Cons ci ratio: 1.006896e-01	ci left: 7.929366e-03	ci right 8.775472e-03	k: 1502	n:180000
KS ci ratio: 8.634526e-03	ci left: 5.314977e-01	ci right 5.361123e-01	k: 96085	n:180000
SRC   180000 perm   56 sec   (3240 perm/sec)   p_kst 5.338056e-01   p_cons 8.344444e-03   p_joint 1.199722e-01

Joint ci ratio: 2.261092e-02	ci left: 1.350378e-01	ci right 1.381312e-01	k: 25950	n:190000
Cons ci ratio: 9.755550e-02	ci left: 8.015052e-03	ci right 8.842157e-03	k: 1600	n:190000
KS ci ratio: 8.402817e-03	ci left: 5.316433e-01	ci right 5.361346e-01	k: 101439	n:190000
SRC   190000 perm   59 sec   (3210 perm/sec)   p_kst 5.338895e-01   p_cons 8.421053e-03   p_joint 1.365789e-01

Outputting figure to mutsig2_images.part000000000166/SRC.3_1655_190000_0.53389_0.0084211_0.13658.png
                gene_name: SRC
               theta_stop: 0.098 
                    nperm: 190000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.0084 
      ci_cons_bounds_left: 0.0080 
     ci_cons_bounds_right: 0.0088 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 59 percent done.
SRF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.646715e-02	ci left: 2.000809e-01	ci right 2.160895e-01	k: 2080	n:10000
Cons ci ratio: 1.670282e-01	ci left: 4.782537e-02	ci right 5.663779e-02	k: 521	n:10000
KS ci ratio: 7.404691e-02	ci left: 2.107297e-01	ci right 2.270344e-01	k: 2188	n:10000
SRF   10000 perm   2 sec   (4902 perm/sec)   p_kst 2.188000e-01   p_cons 5.210000e-02   p_joint 2.080000e-01

Joint ci ratio: 7.004254e-02	ci left: 1.306371e-01	ci right 1.401692e-01	k: 2707	n:20000
Cons ci ratio: 1.104472e-01	ci left: 5.596855e-02	ci right 6.256031e-02	k: 1184	n:20000
KS ci ratio: 5.173977e-02	ci left: 2.171971e-01	ci right 2.287835e-01	k: 4459	n:20000
SRF   20000 perm   4 sec   (4545 perm/sec)   p_kst 2.229500e-01   p_cons 5.920000e-02   p_joint 1.353500e-01

Joint ci ratio: 6.591140e-02	ci left: 1.019798e-01	ci right 1.089635e-01	k: 3163	n:30000
Cons ci ratio: 9.065570e-02	ci left: 5.600099e-02	ci right 6.135154e-02	k: 1759	n:30000
KS ci ratio: 4.205945e-02	ci left: 2.197886e-01	ci right 2.292648e-01	k: 6735	n:30000
SRF   30000 perm   7 sec   (4369 perm/sec)   p_kst 2.245000e-01   p_cons 5.863333e-02   p_joint 1.054333e-01

Outputting figure to mutsig2_images.part000000000166/SRF.3_1555_30000_0.2245_0.058633_0.10543.png
                gene_name: SRF
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 61 percent done.
SRGAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.377012e-02	ci left: 4.352269e-01	ci right 4.548052e-01	k: 4450	n:10000
Cons ci ratio: 3.075105e-02	ci left: 6.093982e-01	ci right 6.285324e-01	k: 6190	n:10000
KS ci ratio: 5.693376e-02	ci left: 3.123490e-01	ci right 3.307550e-01	k: 3215	n:10000
SRGAP2   10000 perm   2 sec   (4715 perm/sec)   p_kst 3.215000e-01   p_cons 6.190000e-01   p_joint 4.450000e-01

Outputting figure to mutsig2_images.part000000000166/SRGAP2.3_3040_10000_0.3215_0.619_0.445.png
                gene_name: SRGAP2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 63 percent done.
SPINK7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.939054e-02	ci left: 4.876522e-01	ci right 5.073492e-01	k: 4975	n:10000
Cons ci ratio: 3.351152e-02	ci left: 5.679478e-01	ci right 5.874070e-01	k: 5777	n:10000
KS ci ratio: 9.423735e-02	ci left: 1.405053e-01	ci right 1.545008e-01	k: 1474	n:10000
SPINK7   10000 perm   2 sec   (6593 perm/sec)   p_kst 1.474000e-01   p_cons 5.777000e-01   p_joint 4.975000e-01

Outputting figure to mutsig2_images.part000000000166/SPINK7.2_274_10000_0.1474_0.5777_0.4975.png
                gene_name: SPINK7
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 65 percent done.
SPN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.888187e-02	ci left: 3.817174e-01	ci right 4.009460e-01	k: 3913	n:10000
Cons ci ratio: 8.834118e-02	ci left: 1.571841e-01	ci right 1.718119e-01	k: 1644	n:10000
KS ci ratio: 5.600744e-02	ci left: 3.194942e-01	ci right 3.380056e-01	k: 3287	n:10000
SPN   10000 perm   2 sec   (6638 perm/sec)   p_kst 3.287000e-01   p_cons 1.644000e-01   p_joint 3.913000e-01

Outputting figure to mutsig2_images.part000000000166/SPN.2_1207_10000_0.3287_0.1644_0.3913.png
                gene_name: SPN
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 67 percent done.
SPNS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.810093e-02	ci left: 3.893828e-01	ci right 4.086761e-01	k: 3990	n:10000
Cons ci ratio: 3.475682e-02	ci left: 5.500043e-01	ci right 5.695609e-01	k: 5598	n:10000
KS ci ratio: 4.858565e-02	ci left: 3.846041e-01	ci right 4.038576e-01	k: 3942	n:10000
SPNS1   10000 perm   2 sec   (6342 perm/sec)   p_kst 3.942000e-01   p_cons 5.598000e-01   p_joint 3.990000e-01

Outputting figure to mutsig2_images.part000000000166/SPNS1.2_1635_10000_0.3942_0.5598_0.399.png
                gene_name: SPNS1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 69 percent done.
SPNS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.025773e-02	ci left: 6.170337e-01	ci right 6.360925e-01	k: 6266	n:10000
Cons ci ratio: 2.736601e-02	ci left: 6.630012e-01	ci right 6.814983e-01	k: 6723	n:10000
KS ci ratio: 9.715309e-02	ci left: 1.331568e-01	ci right 1.468536e-01	k: 1399	n:10000
SPNS2   10000 perm   2 sec   (5443 perm/sec)   p_kst 1.399000e-01   p_cons 6.723000e-01   p_joint 6.266000e-01

Outputting figure to mutsig2_images.part000000000166/SPNS2.2_1698_10000_0.1399_0.6723_0.6266.png
                gene_name: SPNS2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 71 percent done.
SPOCK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.535590e-02	ci left: 8.601875e-01	ci right 8.735980e-01	k: 8670	n:10000
KS ci ratio: 5.884004e-02	ci left: 2.982644e-01	ci right 3.164479e-01	k: 3073	n:10000
SPOCK1   10000 perm   2 sec   (5294 perm/sec)   p_kst 3.073000e-01   p_cons 8.670000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SPOCK1.2_1360_10000_0.3073_0.867_1.png
                gene_name: SPOCK1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
SPON2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.696151e-01	ci left: 4.638557e-02	ci right 5.507852e-02	k: 506	n:10000
Cons ci ratio: 2.108706e-01	ci left: 2.986994e-02	ci right 3.700523e-02	k: 333	n:10000
KS ci ratio: 1.114414e-01	ci left: 1.039317e-01	ci right 1.162965e-01	k: 1100	n:10000
SPON2   10000 perm   2 sec   (6419 perm/sec)   p_kst 1.100000e-01   p_cons 3.330000e-02   p_joint 5.060000e-02

Joint ci ratio: 1.124792e-01	ci left: 5.402115e-02	ci right 6.050832e-02	k: 1144	n:20000
Cons ci ratio: 1.508729e-01	ci left: 3.018195e-02	ci right 3.515513e-02	k: 652	n:20000
KS ci ratio: 7.900420e-02	ci left: 1.052534e-01	ci right 1.139605e-01	k: 2191	n:20000
SPON2   20000 perm   4 sec   (5563 perm/sec)   p_kst 1.095500e-01   p_cons 3.260000e-02   p_joint 5.720000e-02

Joint ci ratio: 1.155680e-01	ci left: 3.479506e-02	ci right 3.909522e-02	k: 1107	n:30000
Cons ci ratio: 1.244079e-01	ci left: 3.003717e-02	ci right 3.405413e-02	k: 960	n:30000
KS ci ratio: 6.433141e-02	ci left: 1.065792e-01	ci right 1.136965e-01	k: 3303	n:30000
SPON2   30000 perm   6 sec   (5242 perm/sec)   p_kst 1.101000e-01   p_cons 3.200000e-02   p_joint 3.690000e-02

Joint ci ratio: 8.077777e-02	ci left: 5.334969e-02	ci right 5.786509e-02	k: 2223	n:40000
Cons ci ratio: 1.088575e-01	ci left: 2.968819e-02	ci right 3.313028e-02	k: 1255	n:40000
KS ci ratio: 5.632776e-02	ci left: 1.049497e-01	ci right 1.110574e-01	k: 4319	n:40000
SPON2   40000 perm   8 sec   (5036 perm/sec)   p_kst 1.079750e-01   p_cons 3.137500e-02   p_joint 5.557500e-02

Joint ci ratio: 7.238796e-02	ci left: 5.339107e-02	ci right 5.742074e-02	k: 2769	n:50000
Cons ci ratio: 9.784898e-02	ci left: 2.957621e-02	ci right 3.263855e-02	k: 1554	n:50000
KS ci ratio: 5.038118e-02	ci left: 1.052725e-01	ci right 1.107331e-01	k: 5399	n:50000
SPON2   50000 perm   10 sec   (4873 perm/sec)   p_kst 1.079800e-01   p_cons 3.108000e-02   p_joint 5.538000e-02

Outputting figure to mutsig2_images.part000000000166/SPON2.2_1016_50000_0.10798_0.03108_0.05538.png
                gene_name: SPON2
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 76 percent done.
SPOP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.868041e-02	ci left: 6.418666e-01	ci right 6.606452e-01	k: 6513	n:10000
Cons ci ratio: 6.884996e-02	ci left: 2.362992e-01	ci right 2.532497e-01	k: 2447	n:10000
KS ci ratio: 7.989902e-02	ci left: 1.861912e-01	ci right 2.017874e-01	k: 1939	n:10000
SPOP   10000 perm   2 sec   (6324 perm/sec)   p_kst 1.939000e-01   p_cons 2.447000e-01   p_joint 6.513000e-01

Outputting figure to mutsig2_images.part000000000166/SPOP.2_1161_10000_0.1939_0.2447_0.6513.png
                gene_name: SPOP
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 78 percent done.
SPOPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.444354e-01	ci left: 6.362530e-02	ci right 7.362777e-02	k: 685	n:10000
Cons ci ratio: 1.849152e-02	ci left: 8.102954e-01	ci right 8.255190e-01	k: 8180	n:10000
KS ci ratio: 2.601440e-01	ci left: 1.930852e-02	ci right 2.517438e-02	k: 221	n:10000
SPOPL   10000 perm   2 sec   (6161 perm/sec)   p_kst 2.210000e-02   p_cons 8.180000e-01   p_joint 6.850000e-02

Joint ci ratio: 9.888312e-02	ci left: 6.923660e-02	ci right 7.648817e-02	k: 1456	n:20000
Cons ci ratio: 1.294978e-02	ci left: 8.154639e-01	ci right 8.261427e-01	k: 16417	n:20000
KS ci ratio: 1.818703e-01	ci left: 2.063260e-02	ci right 2.480776e-02	k: 453	n:20000
SPOPL   20000 perm   4 sec   (5251 perm/sec)   p_kst 2.265000e-02   p_cons 8.208500e-01   p_joint 7.280000e-02

Joint ci ratio: 7.460641e-02	ci left: 8.111420e-02	ci right 8.743325e-02	k: 2527	n:30000
Cons ci ratio: 1.051877e-02	ci left: 8.179939e-01	ci right 8.266769e-01	k: 24671	n:30000
KS ci ratio: 1.472850e-01	ci left: 2.136549e-02	ci right 2.479440e-02	k: 691	n:30000
SPOPL   30000 perm   6 sec   (4623 perm/sec)   p_kst 2.303333e-02   p_cons 8.223667e-01   p_joint 8.423333e-02

Joint ci ratio: 6.496621e-02	ci left: 8.070830e-02	ci right 8.615236e-02	k: 3336	n:40000
Cons ci ratio: 8.660724e-03	ci left: 8.329902e-01	ci right 8.402608e-01	k: 33466	n:40000
KS ci ratio: 1.289670e-01	ci left: 2.111732e-02	ci right 2.405256e-02	k: 902	n:40000
SPOPL   40000 perm   9 sec   (4351 perm/sec)   p_kst 2.255000e-02   p_cons 8.366500e-01   p_joint 8.340000e-02

Joint ci ratio: 7.064944e-02	ci left: 5.594722e-02	ci right 6.006428e-02	k: 2899	n:50000
Cons ci ratio: 7.736996e-03	ci left: 8.337127e-01	ci right 8.402081e-01	k: 41849	n:50000
KS ci ratio: 1.158649e-01	ci left: 2.108184e-02	ci right 2.369402e-02	k: 1118	n:50000
SPOPL   50000 perm   12 sec   (4262 perm/sec)   p_kst 2.236000e-02   p_cons 8.369800e-01   p_joint 5.798000e-02

Joint ci ratio: 6.467165e-02	ci left: 5.583092e-02	ci right 5.957867e-02	k: 3461	n:60000
Cons ci ratio: 7.075706e-03	ci left: 8.334995e-01	ci right 8.394346e-01	k: 50189	n:60000
KS ci ratio: 1.062892e-01	ci left: 2.098723e-02	ci right 2.335930e-02	k: 1329	n:60000
SPOPL   60000 perm   15 sec   (4126 perm/sec)   p_kst 2.215000e-02   p_cons 8.364833e-01   p_joint 5.768333e-02

Joint ci ratio: 6.011960e-02	ci left: 5.553318e-02	ci right 5.898935e-02	k: 4007	n:70000
Cons ci ratio: 6.548706e-03	ci left: 8.338112e-01	ci right 8.393037e-01	k: 58560	n:70000
KS ci ratio: 9.875249e-02	ci left: 2.092608e-02	ci right 2.311379e-02	k: 1540	n:70000
SPOPL   70000 perm   17 sec   (4051 perm/sec)   p_kst 2.200000e-02   p_cons 8.365714e-01   p_joint 5.724286e-02

Outputting figure to mutsig2_images.part000000000166/SPOPL.2_1219_70000_0.022_0.83657_0.057243.png
                gene_name: SPOPL
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.059 

Current progress: 80 percent done.
SPPL2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.140372e-02	ci left: 4.627741e-01	ci right 4.824419e-01	k: 4726	n:10000
KS ci ratio: 2.836544e-02	ci left: 6.468968e-01	ci right 6.656121e-01	k: 6563	n:10000
SPPL2B   10000 perm   2 sec   (5280 perm/sec)   p_kst 6.563000e-01   p_cons 4.726000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SPPL2B.2_1859_10000_0.6563_0.4726_1.png
                gene_name: SPPL2B
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
SPPL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.263356e-02	ci left: 5.808872e-01	ci right 6.002600e-01	k: 5906	n:10000
KS ci ratio: 4.871812e-02	ci left: 3.833100e-01	ci right 4.025524e-01	k: 3929	n:10000
SPPL3   10000 perm   2 sec   (6032 perm/sec)   p_kst 3.929000e-01   p_cons 5.906000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SPPL3.2_1199_10000_0.3929_0.5906_1.png
                gene_name: SPPL3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
SPRR2E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.107643e-01	ci left: 1.051021e-01	ci right 1.175253e-01	k: 1112	n:10000
Cons ci ratio: 8.978231e-02	ci left: 1.528644e-01	ci right 1.673342e-01	k: 1600	n:10000
KS ci ratio: 8.713937e-02	ci left: 1.609163e-01	ci right 1.756775e-01	k: 1682	n:10000
SPRR2E   10000 perm   1 sec   (7355 perm/sec)   p_kst 1.682000e-01   p_cons 1.600000e-01   p_joint 1.112000e-01

Joint ci ratio: 7.868207e-02	ci left: 1.060395e-01	ci right 1.147742e-01	k: 2207	n:20000
Cons ci ratio: 6.345127e-02	ci left: 1.551413e-01	ci right 1.653577e-01	k: 3204	n:20000
KS ci ratio: 6.074107e-02	ci left: 1.670892e-01	ci right 1.776063e-01	k: 3446	n:20000
SPRR2E   20000 perm   3 sec   (6308 perm/sec)   p_kst 1.723000e-01   p_cons 1.602000e-01   p_joint 1.103500e-01

Outputting figure to mutsig2_images.part000000000166/SPRR2E.2_223_20000_0.1723_0.1602_0.11035.png
                gene_name: SPRR2E
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 86 percent done.
SPRR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.233612e-02	ci left: 7.463458e-01	ci right 7.633055e-01	k: 7549	n:10000
Cons ci ratio: 1.081773e-02	ci left: 9.241000e-01	ci right 9.342483e-01	k: 9293	n:10000
KS ci ratio: 5.442180e-02	ci left: 3.322029e-01	ci right 3.508895e-01	k: 3415	n:10000
SPRR3   10000 perm   2 sec   (6101 perm/sec)   p_kst 3.415000e-01   p_cons 9.293000e-01   p_joint 7.549000e-01

Outputting figure to mutsig2_images.part000000000166/SPRR3.2_514_10000_0.3415_0.9293_0.7549.png
                gene_name: SPRR3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 88 percent done.
SPRY4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.504455e-02	ci left: 3.271384e-01	ci right 3.457570e-01	k: 3364	n:10000
Cons ci ratio: 4.003386e-02	ci left: 4.795567e-01	ci right 4.992495e-01	k: 4894	n:10000
KS ci ratio: 8.015541e-02	ci left: 1.852067e-01	ci right 2.007725e-01	k: 1929	n:10000
SPRY4   10000 perm   2 sec   (5760 perm/sec)   p_kst 1.929000e-01   p_cons 4.894000e-01   p_joint 3.364000e-01

Outputting figure to mutsig2_images.part000000000166/SPRY4.2_977_10000_0.1929_0.4894_0.3364.png
                gene_name: SPRY4
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 90 percent done.
SPTLC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.120740e-02	ci left: 9.191472e-01	ci right 9.296040e-01	k: 9245	n:10000
Cons ci ratio: 5.680355e-02	ci left: 3.133413e-01	ci right 3.317622e-01	k: 3225	n:10000
KS ci ratio: 1.409920e-02	ci left: 8.790966e-01	ci right 8.916780e-01	k: 8855	n:10000
SPTLC2   10000 perm   2 sec   (4403 perm/sec)   p_kst 8.855000e-01   p_cons 3.225000e-01   p_joint 9.245000e-01

Outputting figure to mutsig2_images.part000000000166/SPTLC2.2_1737_10000_0.8855_0.3225_0.9245.png
                gene_name: SPTLC2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 92 percent done.
SQLE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.272810e-02	ci left: 5.794826e-01	ci right 5.988655e-01	k: 5892	n:10000
Cons ci ratio: 5.382235e-02	ci left: 3.371692e-01	ci right 3.559202e-01	k: 3465	n:10000
KS ci ratio: 2.357332e-02	ci left: 7.256263e-01	ci right 7.430370e-01	k: 7344	n:10000
SQLE   10000 perm   2 sec   (5586 perm/sec)   p_kst 7.344000e-01   p_cons 3.465000e-01   p_joint 5.892000e-01

Outputting figure to mutsig2_images.part000000000166/SQLE.2_1770_10000_0.7344_0.3465_0.5892.png
                gene_name: SQLE
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 94 percent done.
SRCRB4D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.885682e-02	ci left: 8.043033e-01	ci right 8.197145e-01	k: 8121	n:10000
KS ci ratio: 7.044556e-03	ci left: 9.652030e-01	ci right 9.721204e-01	k: 9688	n:10000
SRCRB4D   10000 perm   2 sec   (5979 perm/sec)   p_kst 9.688000e-01   p_cons 8.121000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000166/SRCRB4D.2_1768_10000_0.9688_0.8121_1.png
                gene_name: SRCRB4D
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
SRD5A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.542450e-02	ci left: 5.405866e-01	ci right 5.601840e-01	k: 5504	n:10000
Cons ci ratio: 1.310673e-01	ci left: 7.669486e-02	ci right 8.755004e-02	k: 820	n:10000
KS ci ratio: 2.757116e-02	ci left: 6.596787e-01	ci right 6.782228e-01	k: 6690	n:10000
SRD5A2   10000 perm   2 sec   (6117 perm/sec)   p_kst 6.690000e-01   p_cons 8.200000e-02   p_joint 5.504000e-01

Joint ci ratio: 3.831151e-02	ci left: 3.369666e-01	ci right 3.501789e-01	k: 6871	n:20000
Cons ci ratio: 9.355220e-02	ci left: 7.691238e-02	ci right 8.451004e-02	k: 1613	n:20000
KS ci ratio: 1.961323e-02	ci left: 6.597664e-01	ci right 6.728852e-01	k: 13327	n:20000
SRD5A2   20000 perm   4 sec   (4891 perm/sec)   p_kst 6.663500e-01   p_cons 8.065000e-02   p_joint 3.435500e-01

Outputting figure to mutsig2_images.part000000000166/SRD5A2.2_784_20000_0.66635_0.08065_0.34355.png
                gene_name: SRD5A2
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 98 percent done.
SREBF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.245171e-02	ci left: 5.835963e-01	ci right 6.029494e-01	k: 5933	n:10000
Cons ci ratio: 2.288515e-02	ci left: 7.371453e-01	ci right 7.543113e-01	k: 7458	n:10000
KS ci ratio: 6.620037e-02	ci left: 2.509293e-01	ci right 2.682110e-01	k: 2595	n:10000
SREBF2   10000 perm   2 sec   (5033 perm/sec)   p_kst 2.595000e-01   p_cons 7.458000e-01   p_joint 5.933000e-01

Outputting figure to mutsig2_images.part000000000166/SREBF2.2_3502_10000_0.2595_0.7458_0.5933.png
                gene_name: SREBF2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000166
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 166 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1544>
Subject: Job 9894157: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1544>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000167> was used as the working directory.
Started at Sat Oct  6 00:31:08 2012
Results reported at Sat Oct  6 00:46:49 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000167.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000167.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 167  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000167.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1081.85 sec.
    Max Memory :      3601 MB
    Max Swap   :      5928 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
167
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 167
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 167: processing genes 14966 - 15055
Calculating significance of each gene.
Using projection method.
14966	SRP19	4.469664e-01
14967	SRP54	4.493593e-01
14968	SRP68	4.810654e-01
14969	SRP72	5.502313e-01
14970	SRP9	1
14971	SRPK1	3.934564e-02
14972	SRPK2	7.213633e-01
14973	SRPK3	1
14974	SRPR	9.489247e-01
14975	SRPRB	1.514572e-01
14976	SRPX	1.317917e-01
In gene SRPX2 the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 1438    n = 1	mu =   7.59e-07
14977	SRPX2	7.641408e-01
14978	SRR	9.192709e-02
14979	SRRD	6.199393e-01
14980	SRRM1	6.402654e-02
14981	SRRM2	7.368282e-01
14982	SRRM3	7.838691e-01
14983	SRRM4	1.316827e-01
14984	SRRT	1.217048e-01
14985	SRXN1	1
14986	SRY	1
14987	SS18	3.021415e-01
14988	SS18L1	1
14989	SS18L2	1
14990	SSB	3.147206e-01
14991	SSBP1	3.785132e-02
14992	SSBP2	4.599310e-01
14993	SSBP3	7.205355e-01
14994	SSBP4	1
14995	SSFA2	8.762290e-01
14996	SSH1	5.930174e-01
14997	SSH2	9.444111e-01
14998	SSH3	8.358478e-01
14999	SSNA1	2.001009e-01
15000/18030 15000	SSPN	1
15001	SSPO	9.998964e-01
15002	SSR1	1.589995e-01
15003	SSR2	2.910452e-01
15004	SSR3	1
15005	SSR4	1
15006	SSRP1	5.982463e-01
15007	SSSCA1	1
15008	SST	4.123955e-01
15009	SSTR1	1.733156e-01
15010	SSTR2	3.346450e-01
15011	SSTR3	1
15012	SSTR4	1.845090e-01
15013	SSTR5	1
15014	SSU72	2.648948e-01
15015	SSX1	1
15016	SSX2IP	3.007844e-01
15017	SSX3	5.267324e-01
15018	SSX5	1.194086e-03
15019	SSX7	1
15020	ST13	7.495542e-01
15021	ST14	9.360594e-01
15022	ST18	2.504349e-01
15023	ST20	1.952230e-01
15024	ST3GAL1	6.972550e-01
15025	ST3GAL2	8.315021e-01
15026	ST3GAL3	1.949542e-01
15027	ST3GAL4	3.998056e-01
15028	ST3GAL5	1
15029	ST3GAL6	1.055710e-02
15030	ST5	6.836807e-01
15031	ST6GAL1	8.316407e-01
15032	ST6GAL2	2.491471e-02
15033	ST6GALNAC1	6.027719e-01
15034	ST6GALNAC2	4.767088e-01
15035	ST6GALNAC3	1.926486e-01
15036	ST6GALNAC4	7.118170e-01
15037	ST6GALNAC5	3.386917e-03
15038	ST6GALNAC6	4.938843e-01
15039	ST7	6.519225e-01
15040	ST7L	3.900392e-01
In gene ST8SIA1 the following bins exceed PROBCAP:
    COAD-AA-3842	categ 6	N = 1091    n = 1	mu =   2.96e-07
15041	ST8SIA1	2.249939e-01
15042	ST8SIA2	1.756411e-01
15043	ST8SIA3	2.887983e-03
15044	ST8SIA4	8.551215e-03
15045	ST8SIA5	2.278952e-01
15046	ST8SIA6	2.951512e-01
15047	STAB1	9.426644e-01
15048	STAB2	1.310157e-01
15049	STAC	1.728229e-02
15050	STAC2	9.268949e-01
15051	STAC3	1
15052	STAG1	1.463930e-03
15053	STAG2	3.649812e-01
15054	STAG3	5.103590e-01
15055	STAG3L2	2.734805e-01
Done

Running MutSig 2:
Scatter job 167: processing genes 14966 - 15055
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
STAB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.653384e-02	ci left: 8.418309e-01	ci right 8.559652e-01	k: 8490	n:10000
Cons ci ratio: 1.330863e-02	ci left: 8.905689e-01	ci right 9.025990e-01	k: 8967	n:10000
KS ci ratio: 3.553197e-02	ci left: 5.390841e-01	ci right 5.586874e-01	k: 5489	n:10000
STAB2   10000 perm   4 sec   (2824 perm/sec)   p_kst 5.489000e-01   p_cons 8.967000e-01   p_joint 8.490000e-01

Outputting figure to mutsig2_images.part000000000167/STAB2.20_7932_10000_0.5489_0.8967_0.849.png
                gene_name: STAB2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 2 percent done.
SRRM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.861344e-01	ci left: 8.233934e-03	ci right 1.225906e-02	k: 101	n:10000
Cons ci ratio: 1.063013e-01	ci left: 1.133015e-01	ci right 1.261210e-01	k: 1196	n:10000
KS ci ratio: 3.093700e-01	ci left: 1.335536e-02	ci right 1.833248e-02	k: 157	n:10000
SRRM2   10000 perm   3 sec   (3010 perm/sec)   p_kst 1.570000e-02   p_cons 1.196000e-01   p_joint 1.010000e-02

Joint ci ratio: 2.347484e-01	ci left: 1.213498e-02	ci right 1.540863e-02	k: 274	n:20000
Cons ci ratio: 7.550851e-02	ci left: 1.142482e-01	ci right 1.232630e-01	k: 2374	n:20000
KS ci ratio: 2.056035e-01	ci left: 1.601286e-02	ci right 1.972920e-02	k: 356	n:20000
SRRM2   20000 perm   7 sec   (2800 perm/sec)   p_kst 1.780000e-02   p_cons 1.187000e-01   p_joint 1.370000e-02

Joint ci ratio: 1.369063e-01	ci left: 2.477622e-02	ci right 2.844956e-02	k: 797	n:30000
Cons ci ratio: 6.192434e-02	ci left: 1.141726e-01	ci right 1.215016e-01	k: 3534	n:30000
KS ci ratio: 1.636481e-01	ci left: 1.722918e-02	ci right 2.033167e-02	k: 562	n:30000
SRRM2   30000 perm   11 sec   (2724 perm/sec)   p_kst 1.873333e-02   p_cons 1.178000e-01   p_joint 2.656667e-02

Joint ci ratio: 1.158525e-01	ci left: 2.621077e-02	ci right 2.945827e-02	k: 1112	n:40000
Cons ci ratio: 5.485138e-02	ci left: 1.101107e-01	ci right 1.163456e-01	k: 4528	n:40000
KS ci ratio: 1.431559e-01	ci left: 1.708140e-02	ci right 1.973917e-02	k: 735	n:40000
SRRM2   40000 perm   15 sec   (2671 perm/sec)   p_kst 1.837500e-02   p_cons 1.132000e-01   p_joint 2.780000e-02

Joint ci ratio: 1.204596e-01	ci left: 1.948932e-02	ci right 2.200675e-02	k: 1036	n:50000
Cons ci ratio: 4.914513e-02	ci left: 1.100990e-01	ci right 1.156660e-01	k: 5643	n:50000
KS ci ratio: 1.278307e-01	ci left: 1.727878e-02	ci right 1.965759e-02	k: 922	n:50000
SRRM2   50000 perm   19 sec   (2624 perm/sec)   p_kst 1.844000e-02   p_cons 1.128600e-01   p_joint 2.072000e-02

Joint ci ratio: 1.149398e-01	ci left: 1.792257e-02	ci right 2.012430e-02	k: 1140	n:60000
Cons ci ratio: 4.493355e-02	ci left: 1.100316e-01	ci right 1.151059e-01	k: 6753	n:60000
KS ci ratio: 1.162979e-01	ci left: 1.750155e-02	ci right 1.967870e-02	k: 1114	n:60000
SRRM2   60000 perm   23 sec   (2586 perm/sec)   p_kst 1.856667e-02   p_cons 1.125500e-01   p_joint 1.900000e-02

Joint ci ratio: 1.202368e-01	ci left: 1.405710e-02	ci right 1.586915e-02	k: 1046	n:70000
Cons ci ratio: 4.162026e-02	ci left: 1.101257e-01	ci right 1.148208e-01	k: 7872	n:70000
KS ci ratio: 1.074119e-01	ci left: 1.766761e-02	ci right 1.968685e-02	k: 1306	n:70000
SRRM2   70000 perm   27 sec   (2554 perm/sec)   p_kst 1.865714e-02   p_cons 1.124571e-01   p_joint 1.494286e-02

Joint ci ratio: 1.113232e-01	ci left: 1.441218e-02	ci right 1.612324e-02	k: 1220	n:80000
Cons ci ratio: 4.178108e-02	ci left: 9.705018e-02	ci right 1.012039e-01	k: 7929	n:80000
KS ci ratio: 1.007056e-01	ci left: 1.765063e-02	ci right 1.953452e-02	k: 1486	n:80000
SRRM2   80000 perm   32 sec   (2522 perm/sec)   p_kst 1.857500e-02   p_cons 9.911250e-02   p_joint 1.525000e-02

Joint ci ratio: 1.167707e-01	ci left: 1.164405e-02	ci right 1.309875e-02	k: 1112	n:90000
Cons ci ratio: 3.939956e-02	ci left: 9.713326e-02	ci right 1.010482e-01	k: 8917	n:90000
KS ci ratio: 9.465479e-02	ci left: 1.781412e-02	ci right 1.959487e-02	k: 1682	n:90000
SRRM2   90000 perm   36 sec   (2490 perm/sec)   p_kst 1.868889e-02   p_cons 9.907778e-02   p_joint 1.235556e-02

Joint ci ratio: 1.026627e-01	ci left: 1.363174e-02	ci right 1.511662e-02	k: 1436	n:100000
Cons ci ratio: 3.732317e-02	ci left: 9.749272e-02	ci right 1.012106e-01	k: 9934	n:100000
KS ci ratio: 9.143028e-02	ci left: 1.722408e-02	ci right 1.888404e-02	k: 1804	n:100000
SRRM2   100000 perm   41 sec   (2461 perm/sec)   p_kst 1.804000e-02   p_cons 9.934000e-02   p_joint 1.436000e-02

Joint ci ratio: 1.011727e-01	ci left: 1.278201e-02	ci right 1.415291e-02	k: 1480	n:110000
Cons ci ratio: 3.554023e-02	ci left: 9.780927e-02	ci right 1.013573e-01	k: 10953	n:110000
KS ci ratio: 8.781945e-02	ci left: 1.700902e-02	ci right 1.858019e-02	k: 1956	n:110000
SRRM2   110000 perm   45 sec   (2432 perm/sec)   p_kst 1.778182e-02   p_cons 9.957273e-02   p_joint 1.345455e-02

Joint ci ratio: 1.006810e-01	ci left: 1.184652e-02	ci right 1.311054e-02	k: 1496	n:120000
Cons ci ratio: 3.403007e-02	ci left: 9.786982e-02	ci right 1.012662e-01	k: 11947	n:120000
KS ci ratio: 8.391900e-02	ci left: 1.710836e-02	ci right 1.861507e-02	k: 2142	n:120000
SRRM2   120000 perm   50 sec   (2399 perm/sec)   p_kst 1.785000e-02   p_cons 9.955833e-02   p_joint 1.246667e-02

Joint ci ratio: 9.078616e-02	ci left: 1.349617e-02	ci right 1.478717e-02	k: 1837	n:130000
Cons ci ratio: 3.266515e-02	ci left: 9.809939e-02	ci right 1.013646e-01	k: 12964	n:130000
KS ci ratio: 8.054882e-02	ci left: 1.717110e-02	ci right 1.861975e-02	k: 2325	n:130000
SRRM2   130000 perm   55 sec   (2369 perm/sec)   p_kst 1.788462e-02   p_cons 9.972308e-02   p_joint 1.413077e-02

Outputting figure to mutsig2_images.part000000000167/SRRM2.15_8315_130000_0.017885_0.099723_0.014131.png
                gene_name: SRRM2
               theta_stop: 0.091 
                    nperm: 130000 
                     p_ks: 0.018 
        ci_ks_bounds_left: 0.017 
       ci_ks_bounds_right: 0.019 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.015 

Current progress: 4 percent done.
STAG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.427666e-01	ci left: 6.507499e-02	ci right 7.517717e-02	k: 700	n:10000
Cons ci ratio: 6.855334e-02	ci left: 2.378802e-01	ci right 2.548678e-01	k: 2463	n:10000
KS ci ratio: 1.458093e-01	ci left: 6.246605e-02	ci right 7.238775e-02	k: 673	n:10000
STAG1   10000 perm   3 sec   (3792 perm/sec)   p_kst 6.730000e-02   p_cons 2.463000e-01   p_joint 7.000000e-02

Joint ci ratio: 9.150171e-02	ci left: 8.019134e-02	ci right 8.793009e-02	k: 1680	n:20000
Cons ci ratio: 4.947432e-02	ci left: 2.329541e-01	ci right 2.448219e-01	k: 4777	n:20000
KS ci ratio: 1.021334e-01	ci left: 6.508590e-02	ci right 7.214014e-02	k: 1371	n:20000
STAG1   20000 perm   6 sec   (3583 perm/sec)   p_kst 6.855000e-02   p_cons 2.388500e-01   p_joint 8.400000e-02

Joint ci ratio: 9.179701e-02	ci left: 5.466371e-02	ci right 5.995576e-02	k: 1718	n:30000
Cons ci ratio: 3.918237e-02	ci left: 2.452403e-01	ci right 2.550748e-01	k: 7504	n:30000
KS ci ratio: 8.595369e-02	ci left: 6.203992e-02	ci right 6.764471e-02	k: 1944	n:30000
STAG1   30000 perm   9 sec   (3483 perm/sec)   p_kst 6.480000e-02   p_cons 2.501333e-01   p_joint 5.726667e-02

Outputting figure to mutsig2_images.part000000000167/STAG1.13_3909_30000_0.0648_0.25013_0.057267.png
                gene_name: STAG1
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.060 

Current progress: 5 percent done.
SRRM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.506007e-02	ci left: 4.209661e-01	ci right 4.404743e-01	k: 4307	n:10000
Cons ci ratio: 7.430771e-02	ci left: 2.095461e-01	ci right 2.258187e-01	k: 2176	n:10000
KS ci ratio: 1.750921e-02	ci left: 8.262552e-01	ci right 8.409500e-01	k: 8337	n:10000
SRRM1   10000 perm   2 sec   (4709 perm/sec)   p_kst 8.337000e-01   p_cons 2.176000e-01   p_joint 4.307000e-01

Outputting figure to mutsig2_images.part000000000167/SRRM1.11_2783_10000_0.8337_0.2176_0.4307.png
                gene_name: SRRM1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 7 percent done.
ST18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.162669e-02	ci left: 3.561511e-01	ci right 3.751272e-01	k: 3656	n:10000
Cons ci ratio: 1.068087e-01	ci left: 1.123248e-01	ci right 1.250982e-01	k: 1186	n:10000
KS ci ratio: 1.799927e-02	ci left: 8.183233e-01	ci right 8.332864e-01	k: 8259	n:10000
ST18   10000 perm   2 sec   (4210 perm/sec)   p_kst 8.259000e-01   p_cons 1.186000e-01   p_joint 3.656000e-01

Joint ci ratio: 4.510220e-02	ci left: 2.679262e-01	ci right 2.803395e-01	k: 5482	n:20000
Cons ci ratio: 7.932974e-02	ci left: 1.044674e-01	ci right 1.131467e-01	k: 2175	n:20000
KS ci ratio: 1.274462e-02	ci left: 8.201678e-01	ci right 8.307374e-01	k: 16510	n:20000
ST18   20000 perm   5 sec   (3839 perm/sec)   p_kst 8.255000e-01   p_cons 1.087500e-01   p_joint 2.741000e-01

Outputting figure to mutsig2_images.part000000000167/ST18.11_3224_20000_0.8255_0.10875_0.2741.png
                gene_name: ST18
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 9 percent done.
SRRT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.047280e-02	ci left: 7.775249e-01	ci right 7.937083e-01	k: 7857	n:10000
KS ci ratio: 2.840317e-02	ci left: 6.462931e-01	ci right 6.650161e-01	k: 6557	n:10000
SRRT   10000 perm   2 sec   (4865 perm/sec)   p_kst 6.557000e-01   p_cons 7.857000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/SRRT.10_2707_10000_0.6557_0.7857_1.png
                gene_name: SRRT
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 11 percent done.
SRPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.228785e-02	ci left: 7.471549e-01	ci right 7.640960e-01	k: 7557	n:10000
Cons ci ratio: 4.871812e-02	ci left: 3.833100e-01	ci right 4.025524e-01	k: 3929	n:10000
KS ci ratio: 3.134068e-02	ci left: 6.003594e-01	ci right 6.195765e-01	k: 6100	n:10000
SRPK1   10000 perm   2 sec   (5053 perm/sec)   p_kst 6.100000e-01   p_cons 3.929000e-01   p_joint 7.557000e-01

Outputting figure to mutsig2_images.part000000000167/SRPK1.9_2032_10000_0.61_0.3929_0.7557.png
                gene_name: SRPK1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 13 percent done.
STAG3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.651309e-02	ci left: 6.769010e-01	ci right 6.951905e-01	k: 6861	n:10000
Cons ci ratio: 4.498665e-02	ci left: 4.217637e-01	ci right 4.412762e-01	k: 4315	n:10000
KS ci ratio: 2.296359e-02	ci left: 7.358313e-01	ci right 7.530260e-01	k: 7445	n:10000
STAG3   10000 perm   2 sec   (4366 perm/sec)   p_kst 7.445000e-01   p_cons 4.315000e-01   p_joint 6.861000e-01

Outputting figure to mutsig2_images.part000000000167/STAG3.9_3810_10000_0.7445_0.4315_0.6861.png
                gene_name: STAG3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 15 percent done.
ST5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.240747e-02	ci left: 1.454077e-01	ci right 1.595954e-01	k: 1524	n:10000
Cons ci ratio: 2.476599e-02	ci left: 7.057380e-01	ci right 7.235368e-01	k: 7147	n:10000
KS ci ratio: 1.318562e-01	ci left: 7.582209e-02	ci right 8.662335e-02	k: 811	n:10000
ST5   10000 perm   2 sec   (4686 perm/sec)   p_kst 8.110000e-02   p_cons 7.147000e-01   p_joint 1.524000e-01

Joint ci ratio: 6.854230e-02	ci left: 1.357114e-01	ci right 1.453933e-01	k: 2810	n:20000
Cons ci ratio: 1.741173e-02	ci left: 7.107512e-01	ci right 7.232856e-01	k: 14341	n:20000
KS ci ratio: 9.371018e-02	ci left: 7.666776e-02	ci right 8.425474e-02	k: 1608	n:20000
ST5   20000 perm   5 sec   (4218 perm/sec)   p_kst 8.040000e-02   p_cons 7.170500e-01   p_joint 1.405000e-01

Outputting figure to mutsig2_images.part000000000167/ST5.8_3490_20000_0.0804_0.71705_0.1405.png
                gene_name: ST5
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 16 percent done.
ST6GAL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.358092e-01	ci left: 7.165494e-02	ci right 8.219310e-02	k: 768	n:10000
Cons ci ratio: 4.023926e-01	ci left: 7.512676e-03	ci right 1.138119e-02	k: 93	n:10000
KS ci ratio: 7.911566e-02	ci left: 1.892437e-01	ci right 2.049332e-01	k: 1970	n:10000
ST6GAL2   10000 perm   2 sec   (5428 perm/sec)   p_kst 1.970000e-01   p_cons 9.300000e-03   p_joint 7.680000e-02

Joint ci ratio: 1.812584e-01	ci left: 2.077592e-02	ci right 2.496439e-02	k: 456	n:20000
Cons ci ratio: 3.167357e-01	ci left: 6.397356e-03	ci right 8.849056e-03	k: 151	n:20000
KS ci ratio: 5.624620e-02	ci left: 1.898749e-01	ci right 2.009138e-01	k: 3907	n:20000
ST6GAL2   20000 perm   4 sec   (4849 perm/sec)   p_kst 1.953500e-01   p_cons 7.550000e-03   p_joint 2.280000e-02

Joint ci ratio: 1.011222e-01	ci left: 4.528294e-02	ci right 5.013846e-02	k: 1430	n:30000
Cons ci ratio: 2.425193e-01	ci left: 7.586271e-03	ci right 9.710531e-03	k: 258	n:30000
KS ci ratio: 4.585698e-02	ci left: 1.913557e-01	ci right 2.003700e-01	k: 5875	n:30000
ST6GAL2   30000 perm   6 sec   (4626 perm/sec)   p_kst 1.958333e-01   p_cons 8.600000e-03   p_joint 4.766667e-02

Joint ci ratio: 1.413089e-01	ci left: 1.753979e-02	ci right 2.023070e-02	k: 754	n:40000
Cons ci ratio: 2.089128e-01	ci left: 7.813225e-03	ci right 9.659157e-03	k: 348	n:40000
KS ci ratio: 3.970290e-02	ci left: 1.920450e-01	ci right 1.998492e-01	k: 7837	n:40000
ST6GAL2   40000 perm   9 sec   (4475 perm/sec)   p_kst 1.959250e-01   p_cons 8.700000e-03   p_joint 1.885000e-02

Joint ci ratio: 1.497451e-01	ci left: 1.250679e-02	ci right 1.455027e-02	k: 675	n:50000
Cons ci ratio: 1.902412e-01	ci left: 7.618678e-03	ci right 9.239171e-03	k: 420	n:50000
KS ci ratio: 3.562335e-02	ci left: 1.914754e-01	ci right 1.984401e-01	k: 9747	n:50000
ST6GAL2   50000 perm   11 sec   (4370 perm/sec)   p_kst 1.949400e-01   p_cons 8.400000e-03   p_joint 1.350000e-02

Joint ci ratio: 1.177040e-01	ci left: 1.708068e-02	ci right 1.923295e-02	k: 1088	n:60000
Cons ci ratio: 1.756401e-01	ci left: 7.509881e-03	ci right 8.971618e-03	k: 493	n:60000
KS ci ratio: 3.251713e-02	ci left: 1.918031e-01	ci right 1.981597e-01	k: 11698	n:60000
ST6GAL2   60000 perm   14 sec   (4284 perm/sec)   p_kst 1.949667e-01   p_cons 8.216667e-03   p_joint 1.813333e-02

Joint ci ratio: 1.208830e-01	ci left: 1.390463e-02	ci right 1.570735e-02	k: 1035	n:70000
Cons ci ratio: 1.635197e-01	ci left: 7.476709e-03	ci right 8.821685e-03	k: 569	n:70000
KS ci ratio: 3.005831e-02	ci left: 1.925250e-01	ci right 1.984145e-01	k: 13682	n:70000
ST6GAL2   70000 perm   17 sec   (4202 perm/sec)   p_kst 1.954571e-01   p_cons 8.128571e-03   p_joint 1.478571e-02

Joint ci ratio: 1.094274e-01	ci left: 1.492290e-02	ci right 1.666247e-02	k: 1262	n:80000
Cons ci ratio: 1.532471e-01	ci left: 7.490514e-03	ci right 8.745550e-03	k: 648	n:80000
KS ci ratio: 2.811555e-02	ci left: 1.927318e-01	ci right 1.982403e-01	k: 15638	n:80000
ST6GAL2   80000 perm   19 sec   (4118 perm/sec)   p_kst 1.954750e-01   p_cons 8.100000e-03   p_joint 1.577500e-02

Joint ci ratio: 1.049033e-01	ci left: 1.447572e-02	ci right 1.608908e-02	k: 1374	n:90000
Cons ci ratio: 1.434100e-01	ci left: 7.642592e-03	ci right 8.833875e-03	k: 740	n:90000
KS ci ratio: 2.658734e-02	ci left: 1.919515e-01	ci right 1.971348e-01	k: 17508	n:90000
ST6GAL2   90000 perm   22 sec   (4042 perm/sec)   p_kst 1.945333e-01   p_cons 8.222222e-03   p_joint 1.526667e-02

Joint ci ratio: 9.520633e-02	ci left: 1.587574e-02	ci right 1.747247e-02	k: 1666	n:100000
Cons ci ratio: 1.408135e-01	ci left: 7.148247e-03	ci right 8.240599e-03	k: 768	n:100000
KS ci ratio: 2.524589e-02	ci left: 1.918018e-01	ci right 1.967159e-01	k: 19425	n:100000
ST6GAL2   100000 perm   25 sec   (3971 perm/sec)   p_kst 1.942500e-01   p_cons 7.680000e-03   p_joint 1.666000e-02

Joint ci ratio: 8.809484e-02	ci left: 1.690229e-02	ci right 1.846875e-02	k: 1944	n:110000
Cons ci ratio: 1.340929e-01	ci left: 7.191910e-03	ci right 8.234297e-03	k: 847	n:110000
KS ci ratio: 2.402401e-02	ci left: 1.925264e-01	ci right 1.972169e-01	k: 21435	n:110000
ST6GAL2   110000 perm   28 sec   (3899 perm/sec)   p_kst 1.948636e-01   p_cons 7.700000e-03   p_joint 1.767273e-02

Joint ci ratio: 8.694210e-02	ci left: 1.593356e-02	ci right 1.738993e-02	k: 1998	n:120000
Cons ci ratio: 1.278346e-01	ci left: 7.277739e-03	ci right 8.279602e-03	k: 932	n:120000
KS ci ratio: 2.299985e-02	ci left: 1.926454e-01	ci right 1.971360e-01	k: 23386	n:120000
ST6GAL2   120000 perm   31 sec   (3832 perm/sec)   p_kst 1.948833e-01   p_cons 7.766667e-03   p_joint 1.665000e-02

Joint ci ratio: 8.478584e-02	ci left: 1.549058e-02	ci right 1.686959e-02	k: 2102	n:130000
Cons ci ratio: 1.228043e-01	ci left: 7.299111e-03	ci right 8.261501e-03	k: 1010	n:130000
KS ci ratio: 2.209209e-02	ci left: 1.928109e-01	ci right 1.971257e-01	k: 25345	n:130000
ST6GAL2   130000 perm   35 sec   (3766 perm/sec)   p_kst 1.949615e-01   p_cons 7.769231e-03   p_joint 1.616923e-02

Joint ci ratio: 8.424782e-02	ci left: 1.458658e-02	ci right 1.587647e-02	k: 2131	n:140000
Cons ci ratio: 1.179974e-01	ci left: 7.359693e-03	ci right 8.289437e-03	k: 1094	n:140000
KS ci ratio: 2.125834e-02	ci left: 1.933329e-01	ci right 1.974940e-01	k: 27357	n:140000
ST6GAL2   140000 perm   38 sec   (3704 perm/sec)   p_kst 1.954071e-01   p_cons 7.814286e-03   p_joint 1.522143e-02

Joint ci ratio: 8.220410e-02	ci left: 1.431908e-02	ci right 1.555311e-02	k: 2239	n:150000
Cons ci ratio: 1.141540e-01	ci left: 7.354529e-03	ci right 8.251320e-03	k: 1169	n:150000
KS ci ratio: 2.055195e-02	ci left: 1.931835e-01	ci right 1.972016e-01	k: 29278	n:150000
ST6GAL2   150000 perm   41 sec   (3642 perm/sec)   p_kst 1.951867e-01   p_cons 7.793333e-03   p_joint 1.492667e-02

Joint ci ratio: 8.109415e-02	ci left: 1.380970e-02	ci right 1.498300e-02	k: 2302	n:160000
Cons ci ratio: 1.104401e-01	ci left: 7.380834e-03	ci right 8.249644e-03	k: 1249	n:160000
KS ci ratio: 1.988349e-02	ci left: 1.934969e-01	ci right 1.973891e-01	k: 31270	n:160000
ST6GAL2   160000 perm   45 sec   (3580 perm/sec)   p_kst 1.954375e-01   p_cons 7.806250e-03   p_joint 1.438750e-02

Joint ci ratio: 8.464464e-02	ci left: 1.193117e-02	ci right 1.299143e-02	k: 2117	n:170000
Cons ci ratio: 1.074334e-01	ci left: 7.352929e-03	ci right 8.193400e-03	k: 1320	n:170000
KS ci ratio: 1.927592e-02	ci left: 1.937812e-01	ci right 1.975586e-01	k: 33263	n:170000
ST6GAL2   170000 perm   48 sec   (3523 perm/sec)   p_kst 1.956647e-01   p_cons 7.764706e-03   p_joint 1.245294e-02

Joint ci ratio: 8.258839e-02	ci left: 1.185032e-02	ci right 1.287658e-02	k: 2224	n:180000
Cons ci ratio: 1.041332e-01	ci left: 7.404172e-03	ci right 8.222910e-03	k: 1405	n:180000
KS ci ratio: 1.871589e-02	ci left: 1.941184e-01	ci right 1.977914e-01	k: 35271	n:180000
ST6GAL2   180000 perm   52 sec   (3469 perm/sec)   p_kst 1.959500e-01   p_cons 7.805556e-03   p_joint 1.235556e-02

Joint ci ratio: 8.429926e-02	ci left: 1.077803e-02	ci right 1.173171e-02	k: 2137	n:190000
Cons ci ratio: 1.012223e-01	ci left: 7.434981e-03	ci right 8.232777e-03	k: 1487	n:190000
KS ci ratio: 1.823089e-02	ci left: 1.939233e-01	ci right 1.974965e-01	k: 37184	n:190000
ST6GAL2   190000 perm   56 sec   (3414 perm/sec)   p_kst 1.957053e-01   p_cons 7.826316e-03   p_joint 1.124737e-02

Joint ci ratio: 8.394702e-02	ci left: 1.033203e-02	ci right 1.124223e-02	k: 2156	n:200000
Cons ci ratio: 9.819643e-02	ci left: 7.516652e-03	ci right 8.297712e-03	k: 1580	n:200000
KS ci ratio: 1.776056e-02	ci left: 1.941226e-01	ci right 1.976062e-01	k: 39172	n:200000
ST6GAL2   200000 perm   60 sec   (3349 perm/sec)   p_kst 1.958600e-01   p_cons 7.900000e-03   p_joint 1.078000e-02

Outputting figure to mutsig2_images.part000000000167/ST6GAL2.8_1697_200000_0.19586_0.0079_0.01078.png
                gene_name: ST6GAL2
               theta_stop: 0.098 
                    nperm: 200000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.0079 
      ci_cons_bounds_left: 0.0075 
     ci_cons_bounds_right: 0.0083 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.011 

Current progress: 18 percent done.
ST8SIA4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.521745e-02	ci left: 5.434917e-01	ci right 5.630773e-01	k: 5533	n:10000
Cons ci ratio: 5.005077e-02	ci left: 3.705722e-01	ci right 3.896977e-01	k: 3801	n:10000
KS ci ratio: 4.792091e-02	ci left: 3.911750e-01	ci right 4.104828e-01	k: 4008	n:10000
ST8SIA4   10000 perm   2 sec   (5537 perm/sec)   p_kst 4.008000e-01   p_cons 3.801000e-01   p_joint 5.533000e-01

Outputting figure to mutsig2_images.part000000000167/ST8SIA4.8_1104_10000_0.4008_0.3801_0.5533.png
                gene_name: ST8SIA4
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 20 percent done.
STAB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.234426e-02	ci left: 5.852018e-01	ci right 6.045429e-01	k: 5949	n:10000
Cons ci ratio: 7.070558e-02	ci left: 2.267179e-01	ci right 2.434367e-01	k: 2350	n:10000
KS ci ratio: 3.501136e-02	ci left: 5.463971e-01	ci right 5.659702e-01	k: 5562	n:10000
STAB1   10000 perm   3 sec   (3197 perm/sec)   p_kst 5.562000e-01   p_cons 2.350000e-01   p_joint 5.949000e-01

Outputting figure to mutsig2_images.part000000000167/STAB1.8_7989_10000_0.5562_0.235_0.5949.png
                gene_name: STAB1
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 22 percent done.
SRRM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.628462e-02	ci left: 4.079093e-01	ci right 4.273387e-01	k: 4176	n:10000
Cons ci ratio: 1.409920e-02	ci left: 8.790966e-01	ci right 8.916780e-01	k: 8855	n:10000
KS ci ratio: 6.800406e-02	ci left: 2.408450e-01	ci right 2.579012e-01	k: 2493	n:10000
SRRM4   10000 perm   2 sec   (5267 perm/sec)   p_kst 2.493000e-01   p_cons 8.855000e-01   p_joint 4.176000e-01

Outputting figure to mutsig2_images.part000000000167/SRRM4.7_1888_10000_0.2493_0.8855_0.4176.png
                gene_name: SRRM4
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 24 percent done.
ST3GAL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.857947e-02	ci left: 6.434762e-01	ci right 6.622347e-01	k: 6529	n:10000
Cons ci ratio: 3.965135e-02	ci left: 4.843537e-01	ci right 5.040497e-01	k: 4942	n:10000
KS ci ratio: 3.546029e-02	ci left: 5.400858e-01	ci right 5.596852e-01	k: 5499	n:10000
ST3GAL6   10000 perm   2 sec   (5110 perm/sec)   p_kst 5.499000e-01   p_cons 4.942000e-01   p_joint 6.529000e-01

Outputting figure to mutsig2_images.part000000000167/ST3GAL6.7_1032_10000_0.5499_0.4942_0.6529.png
                gene_name: ST3GAL6
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 25 percent done.
ST8SIA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.343746e-02	ci left: 8.887237e-01	ci right 9.008452e-01	k: 8949	n:10000
KS ci ratio: 6.939316e-03	ci left: 9.661506e-01	ci right 9.729722e-01	k: 9697	n:10000
ST8SIA3   10000 perm   2 sec   (5492 perm/sec)   p_kst 9.697000e-01   p_cons 8.949000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/ST8SIA3.7_1159_10000_0.9697_0.8949_1.png
                gene_name: ST8SIA3
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
SSH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.952111e-02	ci left: 7.933421e-01	ci right 8.090821e-01	k: 8013	n:10000
KS ci ratio: 2.796419e-02	ci left: 6.533372e-01	ci right 6.719680e-01	k: 6627	n:10000
SSH1   10000 perm   2 sec   (4769 perm/sec)   p_kst 6.627000e-01   p_cons 8.013000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/SSH1.6_3543_10000_0.6627_0.8013_1.png
                gene_name: SSH1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
SSPO
Processing conservation and coverage...
62% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.831486e-01	ci left: 3.977673e-02	ci right 4.789171e-02	k: 437	n:10000
Cons ci ratio: 3.313660e-01	ci left: 1.151417e-02	ci right 1.617538e-02	k: 137	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
SSPO   10000 perm   5 sec   (1889 perm/sec)   p_kst 1   p_cons 1.370000e-02   p_joint 4.370000e-02

Joint ci ratio: 1.238480e-01	ci left: 4.473862e-02	ci right 5.069376e-02	k: 953	n:20000
Cons ci ratio: 2.369421e-01	ci left: 1.189959e-02	ci right 1.514412e-02	k: 269	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
SSPO   20000 perm   11 sec   (1881 perm/sec)   p_kst 1   p_cons 1.345000e-02   p_joint 4.765000e-02

Joint ci ratio: 7.506126e-02	ci left: 8.019682e-02	ci right 8.648415e-02	k: 2499	n:30000
Cons ci ratio: 1.883442e-01	ci left: 1.289170e-02	ci right 1.560357e-02	k: 426	n:30000
KS ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
SSPO   30000 perm   16 sec   (1881 perm/sec)   p_kst 1   p_cons 1.420000e-02   p_joint 8.330000e-02

Joint ci ratio: 8.266407e-02	ci left: 5.102060e-02	ci right 5.544454e-02	k: 2128	n:40000
Cons ci ratio: 1.644846e-01	ci left: 1.284752e-02	ci right 1.517383e-02	k: 559	n:40000
KS ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
SSPO   40000 perm   22 sec   (1844 perm/sec)   p_kst 1   p_cons 1.397500e-02   p_joint 5.320000e-02

Joint ci ratio: 6.481914e-02	ci left: 6.594640e-02	ci right 7.038389e-02	k: 3407	n:50000
Cons ci ratio: 1.520415e-01	ci left: 1.212171e-02	ci right 1.413540e-02	k: 655	n:50000
KS ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
SSPO   50000 perm   28 sec   (1818 perm/sec)   p_kst 1   p_cons 1.310000e-02   p_joint 6.814000e-02

Joint ci ratio: 6.218385e-02	ci left: 6.018182e-02	ci right 6.406067e-02	k: 3726	n:60000
Cons ci ratio: 1.397145e-01	ci left: 1.204455e-02	ci right 1.386968e-02	k: 776	n:60000
KS ci ratio: 6.533116e-05	ci left: 9.999385e-01	ci right 1	k: 60000	n:60000
SSPO   60000 perm   33 sec   (1802 perm/sec)   p_kst 1   p_cons 1.293333e-02   p_joint 6.210000e-02

Joint ci ratio: 5.347212e-02	ci left: 6.939029e-02	ci right 7.321677e-02	k: 4990	n:70000
Cons ci ratio: 1.272688e-01	ci left: 1.251979e-02	ci right 1.423518e-02	k: 935	n:70000
KS ci ratio: 5.599840e-05	ci left: 9.999473e-01	ci right 1	k: 70000	n:70000
SSPO   70000 perm   39 sec   (1794 perm/sec)   p_kst 1   p_cons 1.335714e-02   p_joint 7.128571e-02

Joint ci ratio: 5.554280e-02	ci left: 5.698221e-02	ci right 6.024989e-02	k: 4688	n:80000
Cons ci ratio: 1.185288e-01	ci left: 1.268748e-02	ci right 1.429809e-02	k: 1078	n:80000
KS ci ratio: 4.899878e-05	ci left: 9.999539e-01	ci right 1	k: 80000	n:80000
SSPO   80000 perm   45 sec   (1776 perm/sec)   p_kst 1   p_cons 1.347500e-02   p_joint 5.860000e-02

Joint ci ratio: 5.391495e-02	ci left: 5.398008e-02	ci right 5.698199e-02	k: 4992	n:90000
Cons ci ratio: 1.116977e-01	ci left: 1.274540e-02	ci right 1.426397e-02	k: 1214	n:90000
KS ci ratio: 4.355459e-05	ci left: 9.999590e-01	ci right 1	k: 90000	n:90000
SSPO   90000 perm   51 sec   (1758 perm/sec)   p_kst 1   p_cons 1.348889e-02   p_joint 5.546667e-02

Joint ci ratio: 5.146713e-02	ci left: 5.341710e-02	ci right 5.624879e-02	k: 5482	n:100000
Cons ci ratio: 1.062855e-01	ci left: 1.270624e-02	ci right 1.414219e-02	k: 1341	n:100000
KS ci ratio: 3.919922e-05	ci left: 9.999631e-01	ci right 1	k: 100000	n:100000
SSPO   100000 perm   57 sec   (1751 perm/sec)   p_kst 1   p_cons 1.341000e-02   p_joint 5.482000e-02

Joint ci ratio: 4.312264e-02	ci left: 6.836401e-02	ci right 7.138599e-02	k: 7685	n:110000
Cons ci ratio: 1.008968e-01	ci left: 1.285292e-02	ci right 1.422745e-02	k: 1488	n:110000
KS ci ratio: 3.563572e-05	ci left: 9.999665e-01	ci right 1	k: 110000	n:110000
SSPO   110000 perm   63 sec   (1737 perm/sec)   p_kst 1   p_cons 1.352727e-02   p_joint 6.986364e-02

Joint ci ratio: 4.121742e-02	ci left: 6.864517e-02	ci right 7.154231e-02	k: 8410	n:120000
Cons ci ratio: 9.649193e-02	ci left: 1.291161e-02	ci right 1.422872e-02	k: 1627	n:120000
KS ci ratio: 3.266612e-05	ci left: 9.999693e-01	ci right 1	k: 120000	n:120000
SSPO   120000 perm   69 sec   (1727 perm/sec)   p_kst 1   p_cons 1.355833e-02   p_joint 7.008333e-02

Outputting figure to mutsig2_images.part000000000167/SSPO.6_15875_120000_1_0.013558_0.070083.png
                gene_name: SSPO
               theta_stop: 0.096 
                    nperm: 120000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.072 

Current progress: 31 percent done.
SSX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.208602e-02	ci left: 3.520751e-01	ci right 3.710056e-01	k: 3615	n:10000
KS ci ratio: 1.914040e-02	ci left: 7.996335e-01	ci right 8.151870e-01	k: 8075	n:10000
SSX5   10000 perm   2 sec   (6277 perm/sec)   p_kst 8.075000e-01   p_cons 3.615000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/SSX5.6_718_10000_0.8075_0.3615_1.png
                gene_name: SSX5
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
ST6GALNAC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.512217e-02	ci left: 8.637614e-01	ci right 8.770220e-01	k: 8705	n:10000
Cons ci ratio: 3.916278e-02	ci left: 4.905513e-01	ci right 5.102485e-01	k: 5004	n:10000
KS ci ratio: 3.627716e-02	ci left: 5.287694e-01	ci right 5.484081e-01	k: 5386	n:10000
ST6GALNAC5   10000 perm   2 sec   (5957 perm/sec)   p_kst 5.386000e-01   p_cons 5.004000e-01   p_joint 8.705000e-01

Outputting figure to mutsig2_images.part000000000167/ST6GALNAC5.6_1031_10000_0.5386_0.5004_0.8705.png
                gene_name: ST6GALNAC5
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 35 percent done.
ST8SIA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.177028e-02	ci left: 2.781469e-01	ci right 2.959773e-01	k: 2870	n:10000
Cons ci ratio: 3.531729e-02	ci left: 5.420892e-01	ci right 5.616806e-01	k: 5519	n:10000
KS ci ratio: 7.148093e-02	ci left: 2.228673e-01	ci right 2.394896e-01	k: 2311	n:10000
ST8SIA5   10000 perm   2 sec   (5884 perm/sec)   p_kst 2.311000e-01   p_cons 5.519000e-01   p_joint 2.870000e-01

Outputting figure to mutsig2_images.part000000000167/ST8SIA5.6_1159_10000_0.2311_0.5519_0.287.png
                gene_name: ST8SIA5
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 36 percent done.
STAC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.740328e-02	ci left: 6.623971e-01	ci right 6.809028e-01	k: 6717	n:10000
Cons ci ratio: 3.411267e-02	ci left: 5.592250e-01	ci right 5.787348e-01	k: 5690	n:10000
KS ci ratio: 4.846382e-02	ci left: 3.857986e-01	ci right 4.050623e-01	k: 3954	n:10000
STAC   10000 perm   2 sec   (5821 perm/sec)   p_kst 3.954000e-01   p_cons 5.690000e-01   p_joint 6.717000e-01

Outputting figure to mutsig2_images.part000000000167/STAC.6_1253_10000_0.3954_0.569_0.6717.png
                gene_name: STAC
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 38 percent done.
STAG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.093867e-01	ci left: 1.075413e-01	ci right 1.200846e-01	k: 1137	n:10000
Cons ci ratio: 3.765680e-02	ci left: 5.101534e-01	ci right 5.298350e-01	k: 5200	n:10000
KS ci ratio: 1.331091e-01	ci left: 7.446484e-02	ci right 8.518145e-02	k: 797	n:10000
STAG2   10000 perm   2 sec   (4504 perm/sec)   p_kst 7.970000e-02   p_cons 5.200000e-01   p_joint 1.137000e-01

Joint ci ratio: 7.990779e-02	ci left: 1.030921e-01	ci right 1.117224e-01	k: 2147	n:20000
Cons ci ratio: 2.667464e-02	ci left: 5.121982e-01	ci right 5.260962e-01	k: 10383	n:20000
KS ci ratio: 9.317593e-02	ci left: 7.749952e-02	ci right 8.512273e-02	k: 1625	n:20000
STAG2   20000 perm   5 sec   (4081 perm/sec)   p_kst 8.125000e-02   p_cons 5.191500e-01   p_joint 1.073500e-01

Outputting figure to mutsig2_images.part000000000167/STAG2.6_3939_20000_0.08125_0.51915_0.10735.png
                gene_name: STAG2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 40 percent done.
SSTR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
Cons ci ratio: 2.963012e-01	ci left: 1.465041e-02	ci right 1.983629e-02	k: 171	n:10000
KS ci ratio: 6.279685e-02	ci left: 2.715119e-01	ci right 2.892162e-01	k: 2803	n:10000
SSTR1   10000 perm   2 sec   (5880 perm/sec)   p_kst 2.803000e-01   p_cons 1.710000e-02   p_joint 7.860000e-02

Joint ci ratio: 1.062673e-01	ci left: 6.030523e-02	ci right 6.712229e-02	k: 1273	n:20000
Cons ci ratio: 2.104574e-01	ci left: 1.525391e-02	ci right 1.888845e-02	k: 340	n:20000
KS ci ratio: 4.512488e-02	ci left: 2.677277e-01	ci right 2.801381e-01	k: 5478	n:20000
SSTR1   20000 perm   4 sec   (5212 perm/sec)   p_kst 2.739000e-01   p_cons 1.700000e-02   p_joint 6.365000e-02

Joint ci ratio: 9.168391e-02	ci left: 5.479416e-02	ci right 6.009195e-02	k: 1722	n:30000
Cons ci ratio: 1.687604e-01	ci left: 1.617419e-02	ci right 1.918692e-02	k: 529	n:30000
KS ci ratio: 3.686446e-02	ci left: 2.686602e-01	ci right 2.787837e-01	k: 8211	n:30000
SSTR1   30000 perm   6 sec   (4956 perm/sec)   p_kst 2.737000e-01   p_cons 1.763333e-02   p_joint 5.740000e-02

Joint ci ratio: 7.040493e-02	ci left: 6.938713e-02	ci right 7.447522e-02	k: 2876	n:40000
Cons ci ratio: 1.446650e-01	ci left: 1.671968e-02	ci right 1.935095e-02	k: 720	n:40000
KS ci ratio: 3.237793e-02	ci left: 2.638132e-01	ci right 2.725205e-01	k: 10726	n:40000
SSTR1   40000 perm   8 sec   (4769 perm/sec)   p_kst 2.681500e-01   p_cons 1.800000e-02   p_joint 7.190000e-02

Joint ci ratio: 7.815750e-02	ci left: 4.602481e-02	ci right 4.978790e-02	k: 2394	n:50000
Cons ci ratio: 1.186609e-01	ci left: 2.009114e-02	ci right 2.264485e-02	k: 1067	n:50000
KS ci ratio: 2.898298e-02	ci left: 2.639620e-01	ci right 2.717449e-01	k: 13392	n:50000
SSTR1   50000 perm   11 sec   (4650 perm/sec)   p_kst 2.678400e-01   p_cons 2.134000e-02   p_joint 4.788000e-02

Joint ci ratio: 6.708020e-02	ci left: 5.204076e-02	ci right 5.566921e-02	k: 3230	n:60000
Cons ci ratio: 1.083914e-01	ci left: 2.017581e-02	ci right 2.250415e-02	k: 1279	n:60000
KS ci ratio: 2.636764e-02	ci left: 2.656373e-01	ci right 2.727517e-01	k: 16151	n:60000
SSTR1   60000 perm   13 sec   (4541 perm/sec)   p_kst 2.691833e-01   p_cons 2.131667e-02   p_joint 5.383333e-02

Joint ci ratio: 5.515037e-02	ci left: 6.545482e-02	ci right 6.918114e-02	k: 4711	n:70000
Cons ci ratio: 1.003625e-01	ci left: 2.025709e-02	ci right 2.241142e-02	k: 1492	n:70000
KS ci ratio: 2.442411e-02	ci left: 2.657033e-01	ci right 2.722873e-01	k: 18829	n:70000
SSTR1   70000 perm   16 sec   (4436 perm/sec)   p_kst 2.689857e-01   p_cons 2.131429e-02   p_joint 6.730000e-02

Joint ci ratio: 4.522128e-02	ci left: 8.391754e-02	ci right 8.781255e-02	k: 6868	n:80000
Cons ci ratio: 9.408609e-02	ci left: 2.023736e-02	ci right 2.224757e-02	k: 1698	n:80000
KS ci ratio: 2.282128e-02	ci left: 2.663528e-01	ci right 2.725139e-01	k: 21554	n:80000
SSTR1   80000 perm   18 sec   (4343 perm/sec)   p_kst 2.694250e-01   p_cons 2.122500e-02   p_joint 8.585000e-02

Outputting figure to mutsig2_images.part000000000167/SSTR1.5_1180_80000_0.26943_0.021225_0.08585.png
                gene_name: SSTR1
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.021 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.022 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.084 
    ci_joint_bounds_right: 0.088 

Current progress: 42 percent done.
SRP68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.941013e-02	ci left: 6.303014e-01	ci right 6.492171e-01	k: 6398	n:10000
Cons ci ratio: 1.743974e-02	ci left: 8.273742e-01	ci right 8.420303e-01	k: 8348	n:10000
KS ci ratio: 3.690201e-02	ci left: 5.202604e-01	ci right 5.399221e-01	k: 5301	n:10000
SRP68   10000 perm   2 sec   (5939 perm/sec)   p_kst 5.301000e-01   p_cons 8.348000e-01   p_joint 6.398000e-01

Outputting figure to mutsig2_images.part000000000167/SRP68.4_1948_10000_0.5301_0.8348_0.6398.png
                gene_name: SRP68
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 44 percent done.
SRP72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.399040e-02	ci left: 7.186579e-01	ci right 7.362094e-01	k: 7275	n:10000
Cons ci ratio: 1.898640e-02	ci left: 8.021712e-01	ci right 8.176478e-01	k: 8100	n:10000
KS ci ratio: 3.190330e-02	ci left: 5.918258e-01	ci right 6.111151e-01	k: 6015	n:10000
SRP72   10000 perm   2 sec   (5826 perm/sec)   p_kst 6.015000e-01   p_cons 8.100000e-01   p_joint 7.275000e-01

Outputting figure to mutsig2_images.part000000000167/SRP72.4_2092_10000_0.6015_0.81_0.7275.png
                gene_name: SRP72
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 45 percent done.
SRPK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.612326e-02	ci left: 4.096033e-01	ci right 4.290437e-01	k: 4193	n:10000
Cons ci ratio: 2.428092e-02	ci left: 7.138119e-01	ci right 7.314582e-01	k: 7227	n:10000
KS ci ratio: 6.800406e-02	ci left: 2.408450e-01	ci right 2.579012e-01	k: 2493	n:10000
SRPK2   10000 perm   2 sec   (5654 perm/sec)   p_kst 2.493000e-01   p_cons 7.227000e-01   p_joint 4.193000e-01

Outputting figure to mutsig2_images.part000000000167/SRPK2.4_2206_10000_0.2493_0.7227_0.4193.png
                gene_name: SRPK2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 47 percent done.
SRPX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.681323e-02	ci left: 5.214615e-01	ci right 5.411203e-01	k: 5313	n:10000
Cons ci ratio: 8.020691e-02	ci left: 1.850099e-01	ci right 2.005695e-01	k: 1927	n:10000
KS ci ratio: 1.960686e-02	ci left: 7.919218e-01	ci right 8.077031e-01	k: 7999	n:10000
SRPX   10000 perm   2 sec   (5868 perm/sec)   p_kst 7.999000e-01   p_cons 1.927000e-01   p_joint 5.313000e-01

Outputting figure to mutsig2_images.part000000000167/SRPX.4_1435_10000_0.7999_0.1927_0.5313.png
                gene_name: SRPX
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 49 percent done.
SSH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.560300e-02	ci left: 2.543910e-01	ci right 2.717472e-01	k: 2630	n:10000
Cons ci ratio: 3.327861e-02	ci left: 5.713575e-01	ci right 5.907953e-01	k: 5811	n:10000
KS ci ratio: 1.799496e-01	ci left: 4.121131e-02	ci right 4.945618e-02	k: 452	n:10000
SSH2   10000 perm   2 sec   (4366 perm/sec)   p_kst 4.520000e-02   p_cons 5.811000e-01   p_joint 2.630000e-01

Joint ci ratio: 8.338596e-02	ci left: 9.533591e-02	ci right 1.036809e-01	k: 1989	n:20000
Cons ci ratio: 2.415967e-02	ci left: 5.613508e-01	ci right 5.751293e-01	k: 11365	n:20000
KS ci ratio: 1.246736e-01	ci left: 4.415643e-02	ci right 5.007613e-02	k: 941	n:20000
SSH2   20000 perm   5 sec   (3973 perm/sec)   p_kst 4.705000e-02   p_cons 5.682500e-01   p_joint 9.945000e-02

Joint ci ratio: 6.326062e-02	ci left: 1.098657e-01	ci right 1.170760e-01	k: 3403	n:30000
Cons ci ratio: 2.005904e-02	ci left: 5.543941e-01	ci right 5.656610e-01	k: 16801	n:30000
KS ci ratio: 1.027539e-01	ci left: 4.388449e-02	ci right 4.867054e-02	k: 1387	n:30000
SSH2   30000 perm   8 sec   (3822 perm/sec)   p_kst 4.623333e-02   p_cons 5.600333e-01   p_joint 1.134333e-01

Joint ci ratio: 6.102810e-02	ci left: 9.063938e-02	ci right 9.636979e-02	k: 3739	n:40000
Cons ci ratio: 1.695552e-02	ci left: 5.670835e-01	ci right 5.768060e-01	k: 22878	n:40000
KS ci ratio: 8.913099e-02	ci left: 4.406547e-02	ci right 4.820074e-02	k: 1844	n:40000
SSH2   40000 perm   11 sec   (3717 perm/sec)   p_kst 4.610000e-02   p_cons 5.719500e-01   p_joint 9.347500e-02

Outputting figure to mutsig2_images.part000000000167/SSH2.4_4332_40000_0.0461_0.57195_0.093475.png
                gene_name: SSH2
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.096 

Current progress: 51 percent done.
SSTR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.584068e-01	ci left: 5.311294e-02	ci right 6.234681e-02	k: 576	n:10000
Cons ci ratio: 2.772291e-01	ci left: 1.688052e-02	ci right 2.240432e-02	k: 195	n:10000
KS ci ratio: 6.333011e-02	ci left: 2.681458e-01	ci right 2.857843e-01	k: 2769	n:10000
SSTR4   10000 perm   2 sec   (6402 perm/sec)   p_kst 2.769000e-01   p_cons 1.950000e-02   p_joint 5.760000e-02

Joint ci ratio: 9.633930e-02	ci left: 7.275530e-02	ci right 8.016840e-02	k: 1528	n:20000
Cons ci ratio: 1.930428e-01	ci left: 1.824762e-02	ci right 2.219360e-02	k: 403	n:20000
KS ci ratio: 4.506257e-02	ci left: 2.682737e-01	ci right 2.806919e-01	k: 5489	n:20000
SSTR4   20000 perm   4 sec   (5474 perm/sec)   p_kst 2.744500e-01   p_cons 2.015000e-02   p_joint 7.640000e-02

Joint ci ratio: 9.120750e-02	ci left: 5.534861e-02	ci right 6.067072e-02	k: 1739	n:30000
Cons ci ratio: 1.563089e-01	ci left: 1.892640e-02	ci right 2.216738e-02	k: 615	n:30000
KS ci ratio: 3.679043e-02	ci left: 2.694555e-01	ci right 2.795882e-01	k: 8235	n:30000
SSTR4   30000 perm   6 sec   (5206 perm/sec)   p_kst 2.745000e-01   p_cons 2.050000e-02   p_joint 5.796667e-02

Joint ci ratio: 7.651541e-02	ci left: 5.921414e-02	ci right 6.394976e-02	k: 2462	n:40000
Cons ci ratio: 1.298525e-01	ci left: 2.082683e-02	ci right 2.374309e-02	k: 890	n:40000
KS ci ratio: 3.211603e-02	ci left: 2.669967e-01	ci right 2.757365e-01	k: 10854	n:40000
SSTR4   40000 perm   8 sec   (4975 perm/sec)   p_kst 2.713500e-01   p_cons 2.225000e-02   p_joint 6.155000e-02

Joint ci ratio: 6.843465e-02	ci left: 5.946874e-02	ci right 6.370234e-02	k: 3078	n:50000
Cons ci ratio: 1.173209e-01	ci left: 2.055726e-02	ci right 2.313867e-02	k: 1091	n:50000
KS ci ratio: 2.846159e-02	ci left: 2.711093e-01	ci right 2.789569e-01	k: 13751	n:50000
SSTR4   50000 perm   10 sec   (4841 perm/sec)   p_kst 2.750200e-01   p_cons 2.182000e-02   p_joint 6.156000e-02

Joint ci ratio: 6.658074e-02	ci left: 5.279532e-02	ci right 5.644791e-02	k: 3276	n:60000
Cons ci ratio: 1.122134e-01	ci left: 1.881368e-02	ci right 2.106643e-02	k: 1195	n:60000
KS ci ratio: 2.601482e-02	ci left: 2.709485e-01	ci right 2.781067e-01	k: 16471	n:60000
SSTR4   60000 perm   13 sec   (4725 perm/sec)   p_kst 2.745167e-01   p_cons 1.991667e-02   p_joint 5.460000e-02

Joint ci ratio: 6.626315e-02	ci left: 4.603434e-02	ci right 4.920329e-02	k: 3332	n:70000
Cons ci ratio: 1.040545e-01	ci left: 1.883646e-02	ci right 2.091789e-02	k: 1390	n:70000
KS ci ratio: 2.413120e-02	ci left: 2.704563e-01	ci right 2.770767e-01	k: 19163	n:70000
SSTR4   70000 perm   15 sec   (4622 perm/sec)   p_kst 2.737571e-01   p_cons 1.985714e-02   p_joint 4.760000e-02

Joint ci ratio: 6.090131e-02	ci left: 4.773600e-02	ci right 5.074679e-02	k: 3938	n:80000
Cons ci ratio: 9.735651e-02	ci left: 1.889463e-02	ci right 2.084041e-02	k: 1588	n:80000
KS ci ratio: 2.256325e-02	ci left: 2.708366e-01	ci right 2.770298e-01	k: 21914	n:80000
SSTR4   80000 perm   18 sec   (4520 perm/sec)   p_kst 2.739250e-01   p_cons 1.985000e-02   p_joint 4.922500e-02

Outputting figure to mutsig2_images.part000000000167/SSTR4.4_1171_80000_0.27392_0.01985_0.049225.png
                gene_name: SSTR4
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.051 

Current progress: 53 percent done.
SSX2IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.954595e-02	ci left: 2.326438e-01	ci right 2.495073e-01	k: 2410	n:10000
Cons ci ratio: 8.634954e-03	ci left: 9.495015e-01	ci right 9.578316e-01	k: 9538	n:10000
KS ci ratio: 9.679164e-02	ci left: 1.340383e-01	ci right 1.477716e-01	k: 1408	n:10000
SSX2IP   10000 perm   2 sec   (6014 perm/sec)   p_kst 1.408000e-01   p_cons 9.538000e-01   p_joint 2.410000e-01

Outputting figure to mutsig2_images.part000000000167/SSX2IP.4_1897_10000_0.1408_0.9538_0.241.png
                gene_name: SSX2IP
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 55 percent done.
ST3GAL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.808135e-02	ci left: 5.045512e-01	ci right 5.242404e-01	k: 5144	n:10000
Cons ci ratio: 5.345604e-02	ci left: 3.402490e-01	ci right 3.590387e-01	k: 3496	n:10000
KS ci ratio: 3.613146e-02	ci left: 5.307719e-01	ci right 5.504044e-01	k: 5406	n:10000
ST3GAL3   10000 perm   2 sec   (6179 perm/sec)   p_kst 5.406000e-01   p_cons 3.496000e-01   p_joint 5.144000e-01

Outputting figure to mutsig2_images.part000000000167/ST3GAL3.4_1383_10000_0.5406_0.3496_0.5144.png
                gene_name: ST3GAL3
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 56 percent done.
ST6GALNAC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.279696e-02	ci left: 1.754646e-01	ci right 1.907205e-01	k: 1830	n:10000
Cons ci ratio: 1.201483e-01	ci left: 9.039166e-02	ci right 1.020448e-01	k: 961	n:10000
KS ci ratio: 9.643344e-02	ci left: 1.349198e-01	ci right 1.486895e-01	k: 1417	n:10000
ST6GALNAC3   10000 perm   2 sec   (6543 perm/sec)   p_kst 1.417000e-01   p_cons 9.610000e-02   p_joint 1.830000e-01

Joint ci ratio: 4.197063e-02	ci left: 2.972811e-01	ci right 3.100761e-01	k: 6073	n:20000
Cons ci ratio: 8.274106e-02	ci left: 9.670986e-02	ci right 1.051066e-01	k: 2017	n:20000
KS ci ratio: 6.740259e-02	ci left: 1.397527e-01	ci right 1.495508e-01	k: 2892	n:20000
ST6GALNAC3   20000 perm   4 sec   (5650 perm/sec)   p_kst 1.446000e-01   p_cons 1.008500e-01   p_joint 3.036500e-01

Outputting figure to mutsig2_images.part000000000167/ST6GALNAC3.4_952_20000_0.1446_0.10085_0.30365.png
                gene_name: ST6GALNAC3
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 58 percent done.
ST8SIA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.088077e-01	ci left: 4.407042e-03	ci right 7.491475e-03	k: 58	n:10000
Cons ci ratio: 6.508261e-02	ci left: 2.574577e-01	ci right 2.748787e-01	k: 2661	n:10000
KS ci ratio: 7.533478e-01	ci left: 1.699088e-03	ci right 3.807298e-03	k: 26	n:10000
ST8SIA2   10000 perm   2 sec   (6014 perm/sec)   p_kst 2.600000e-03   p_cons 2.661000e-01   p_joint 5.800000e-03

Joint ci ratio: 4.217842e-01	ci left: 3.396118e-03	ci right 5.252548e-03	k: 85	n:20000
Cons ci ratio: 4.547915e-02	ci left: 2.646501e-01	ci right 2.770166e-01	k: 5416	n:20000
KS ci ratio: 4.892032e-01	ci left: 2.421370e-03	ci right 4.028444e-03	k: 63	n:20000
ST8SIA2   20000 perm   4 sec   (5288 perm/sec)   p_kst 3.150000e-03   p_cons 2.708000e-01   p_joint 4.250000e-03

Joint ci ratio: 2.439484e-01	ci left: 7.492322e-03	ci right 9.604510e-03	k: 255	n:30000
Cons ci ratio: 3.806604e-02	ci left: 2.561695e-01	ci right 2.661435e-01	k: 7834	n:30000
KS ci ratio: 4.125772e-01	ci left: 2.383134e-03	ci right 3.649489e-03	k: 89	n:30000
ST8SIA2   30000 perm   6 sec   (5005 perm/sec)   p_kst 2.966667e-03   p_cons 2.611333e-01   p_joint 8.500000e-03

Joint ci ratio: 2.347101e-01	ci left: 6.112239e-03	ci right 7.760564e-03	k: 276	n:40000
Cons ci ratio: 3.296976e-02	ci left: 2.568005e-01	ci right 2.654342e-01	k: 10444	n:40000
KS ci ratio: 3.514760e-01	ci left: 2.556258e-03	ci right 3.667820e-03	k: 123	n:40000
ST8SIA2   40000 perm   8 sec   (4821 perm/sec)   p_kst 3.075000e-03   p_cons 2.611000e-01   p_joint 6.900000e-03

Joint ci ratio: 2.374745e-01	ci left: 4.776484e-03	ci right 6.081948e-03	k: 270	n:50000
Cons ci ratio: 2.950321e-02	ci left: 2.570748e-01	ci right 2.647929e-01	k: 13046	n:50000
KS ci ratio: 3.174672e-01	ci left: 2.558091e-03	ci right 3.541012e-03	k: 151	n:50000
ST8SIA2   50000 perm   11 sec   (4680 perm/sec)   p_kst 3.020000e-03   p_cons 2.609200e-01   p_joint 5.400000e-03

Joint ci ratio: 2.367069e-01	ci left: 4.011562e-03	ci right 5.103879e-03	k: 272	n:60000
Cons ci ratio: 2.622431e-02	ci left: 2.677783e-01	ci right 2.749105e-01	k: 16280	n:60000
KS ci ratio: 2.933778e-01	ci left: 2.531910e-03	ci right 3.417251e-03	k: 177	n:60000
ST8SIA2   60000 perm   13 sec   (4560 perm/sec)   p_kst 2.950000e-03   p_cons 2.713333e-01   p_joint 4.533333e-03

Joint ci ratio: 1.630876e-01	ci left: 7.517827e-03	ci right 8.866275e-03	k: 572	n:70000
Cons ci ratio: 2.432513e-02	ci left: 2.672971e-01	ci right 2.738934e-01	k: 18941	n:70000
KS ci ratio: 2.603314e-01	ci left: 2.808534e-03	ci right 3.662037e-03	k: 225	n:70000
ST8SIA2   70000 perm   16 sec   (4455 perm/sec)   p_kst 3.214286e-03   p_cons 2.705857e-01   p_joint 8.171429e-03

Joint ci ratio: 1.337379e-01	ci left: 9.913980e-03	ci right 1.134684e-02	k: 849	n:80000
Cons ci ratio: 2.271811e-02	ci left: 2.681338e-01	ci right 2.743078e-01	k: 21697	n:80000
KS ci ratio: 2.427112e-01	ci left: 2.855715e-03	ci right 3.655979e-03	k: 259	n:80000
ST8SIA2   80000 perm   18 sec   (4361 perm/sec)   p_kst 3.237500e-03   p_cons 2.712125e-01   p_joint 1.061250e-02

Joint ci ratio: 1.301571e-01	ci left: 9.327970e-03	ci right 1.063724e-02	k: 897	n:90000
Cons ci ratio: 2.146182e-02	ci left: 2.675222e-01	ci right 2.733371e-01	k: 24338	n:90000
KS ci ratio: 2.302164e-01	ci left: 2.841554e-03	ci right 3.591032e-03	k: 288	n:90000
ST8SIA2   90000 perm   21 sec   (4271 perm/sec)   p_kst 3.200000e-03   p_cons 2.704222e-01   p_joint 9.966667e-03

Joint ci ratio: 1.508206e-01	ci left: 6.203728e-03	ci right 7.225199e-03	k: 670	n:100000
Cons ci ratio: 2.034672e-02	ci left: 2.679378e-01	ci right 2.734555e-01	k: 27069	n:100000
KS ci ratio: 2.184405e-01	ci left: 2.859430e-03	ci right 3.569868e-03	k: 320	n:100000
ST8SIA2   100000 perm   24 sec   (4183 perm/sec)   p_kst 3.200000e-03   p_cons 2.706900e-01   p_joint 6.700000e-03

Joint ci ratio: 1.475832e-01	ci left: 5.902230e-03	ci right 6.851351e-03	k: 700	n:110000
Cons ci ratio: 1.939002e-02	ci left: 2.682661e-01	ci right 2.735278e-01	k: 29798	n:110000
KS ci ratio: 2.059760e-01	ci left: 2.943820e-03	ci right 3.628237e-03	k: 360	n:110000
ST8SIA2   110000 perm   27 sec   (4103 perm/sec)   p_kst 3.272727e-03   p_cons 2.708909e-01   p_joint 6.363636e-03

Joint ci ratio: 1.407205e-01	ci left: 5.972694e-03	ci right 6.884739e-03	k: 770	n:120000
Cons ci ratio: 1.855240e-02	ci left: 2.686361e-01	ci right 2.736749e-01	k: 32538	n:120000
KS ci ratio: 1.954273e-01	ci left: 3.015104e-03	ci right 3.675924e-03	k: 400	n:120000
ST8SIA2   120000 perm   30 sec   (4029 perm/sec)   p_kst 3.333333e-03   p_cons 2.711500e-01   p_joint 6.416667e-03

Joint ci ratio: 1.420589e-01	ci left: 5.409261e-03	ci right 6.243784e-03	k: 756	n:130000
Cons ci ratio: 1.784283e-02	ci left: 2.683320e-01	ci right 2.731705e-01	k: 35197	n:130000
KS ci ratio: 1.889461e-01	ci left: 2.988192e-03	ci right 3.618900e-03	k: 428	n:130000
ST8SIA2   130000 perm   33 sec   (3959 perm/sec)   p_kst 3.292308e-03   p_cons 2.707462e-01   p_joint 5.815385e-03

Joint ci ratio: 1.481100e-01	ci left: 4.609721e-03	ci right 5.353866e-03	k: 696	n:140000
Cons ci ratio: 1.722386e-02	ci left: 2.677326e-01	ci right 2.723912e-01	k: 37808	n:140000
KS ci ratio: 1.830697e-01	ci left: 2.965435e-03	ci right 3.569714e-03	k: 456	n:140000
ST8SIA2   140000 perm   36 sec   (3895 perm/sec)   p_kst 3.257143e-03   p_cons 2.700571e-01   p_joint 4.971429e-03

Joint ci ratio: 1.137141e-01	ci left: 7.412832e-03	ci right 8.313014e-03	k: 1178	n:150000
Cons ci ratio: 1.661500e-02	ci left: 2.683994e-01	ci right 2.729028e-01	k: 40597	n:150000
KS ci ratio: 1.751906e-01	ci left: 3.035199e-03	ci right 3.624258e-03	k: 498	n:150000
ST8SIA2   150000 perm   39 sec   (3835 perm/sec)   p_kst 3.320000e-03   p_cons 2.706467e-01   p_joint 7.853333e-03

Joint ci ratio: 1.128299e-01	ci left: 7.064843e-03	ci right 7.915650e-03	k: 1197	n:160000
Cons ci ratio: 1.610003e-02	ci left: 2.681623e-01	ci right 2.725210e-01	k: 43254	n:160000
KS ci ratio: 1.699911e-01	ci left: 3.030880e-03	ci right 3.599853e-03	k: 529	n:160000
ST8SIA2   160000 perm   42 sec   (3775 perm/sec)   p_kst 3.306250e-03   p_cons 2.703375e-01   p_joint 7.481250e-03

Joint ci ratio: 1.161210e-01	ci left: 6.271993e-03	ci right 7.050857e-03	k: 1131	n:170000
Cons ci ratio: 1.561989e-02	ci left: 2.682133e-01	ci right 2.724416e-01	k: 45955	n:170000
KS ci ratio: 1.649340e-01	ci left: 3.038576e-03	ci right 3.590341e-03	k: 562	n:170000
ST8SIA2   170000 perm   46 sec   (3715 perm/sec)   p_kst 3.305882e-03   p_cons 2.703235e-01   p_joint 6.652941e-03

Joint ci ratio: 1.193127e-01	ci left: 5.605305e-03	ci right 6.321858e-03	k: 1072	n:180000
Cons ci ratio: 1.517004e-02	ci left: 2.685264e-01	ci right 2.726366e-01	k: 48704	n:180000
KS ci ratio: 1.611187e-01	ci left: 3.013644e-03	ci right 3.546997e-03	k: 589	n:180000
ST8SIA2   180000 perm   49 sec   (3656 perm/sec)   p_kst 3.272222e-03   p_cons 2.705778e-01   p_joint 5.955556e-03

Joint ci ratio: 1.267289e-01	ci left: 4.692885e-03	ci right 5.332887e-03	k: 951	n:190000
Cons ci ratio: 1.476934e-02	ci left: 2.684772e-01	ci right 2.724772e-01	k: 51390	n:190000
KS ci ratio: 1.579421e-01	ci left: 2.976300e-03	ci right 3.491673e-03	k: 613	n:190000
ST8SIA2   190000 perm   53 sec   (3597 perm/sec)   p_kst 3.226316e-03   p_cons 2.704737e-01   p_joint 5.005263e-03

Joint ci ratio: 1.168037e-01	ci left: 5.272783e-03	ci right 5.931672e-03	k: 1119	n:200000
Cons ci ratio: 1.438367e-02	ci left: 2.688483e-01	ci right 2.727483e-01	k: 54159	n:200000
KS ci ratio: 1.531504e-01	ci left: 3.014900e-03	ci right 3.519667e-03	k: 652	n:200000
ST8SIA2   200000 perm   56 sec   (3543 perm/sec)   p_kst 3.260000e-03   p_cons 2.707950e-01   p_joint 5.595000e-03

Joint ci ratio: 1.161952e-01	ci left: 5.077145e-03	ci right 5.708054e-03	k: 1131	n:210000
Cons ci ratio: 1.403449e-02	ci left: 2.689667e-01	ci right 2.727729e-01	k: 56882	n:210000
KS ci ratio: 1.492032e-01	ci left: 3.031698e-03	ci right 3.525027e-03	k: 687	n:210000
ST8SIA2   210000 perm   60 sec   (3491 perm/sec)   p_kst 3.271429e-03   p_cons 2.708667e-01   p_joint 5.385714e-03

Joint ci ratio: 1.199975e-01	ci left: 4.537505e-03	ci right 5.121114e-03	k: 1061	n:220000
Cons ci ratio: 1.371051e-02	ci left: 2.690482e-01	ci right 2.727669e-01	k: 59599	n:220000
KS ci ratio: 1.450440e-01	ci left: 3.069024e-03	ci right 3.553300e-03	k: 727	n:220000
ST8SIA2   220000 perm   64 sec   (3440 perm/sec)   p_kst 3.304545e-03   p_cons 2.709045e-01   p_joint 4.822727e-03

Joint ci ratio: 1.171624e-01	ci left: 4.559606e-03	ci right 5.131243e-03	k: 1113	n:230000
Cons ci ratio: 1.340414e-02	ci left: 2.692363e-01	ci right 2.728738e-01	k: 62342	n:230000
KS ci ratio: 1.415846e-01	ci left: 3.086499e-03	ci right 3.560936e-03	k: 763	n:230000
ST8SIA2   230000 perm   68 sec   (3388 perm/sec)   p_kst 3.317391e-03   p_cons 2.710522e-01   p_joint 4.839130e-03

Joint ci ratio: 1.164933e-01	ci left: 4.422188e-03	ci right 4.973212e-03	k: 1126	n:240000
Cons ci ratio: 1.312822e-02	ci left: 2.690852e-01	ci right 2.726453e-01	k: 65007	n:240000
KS ci ratio: 1.379297e-01	ci left: 3.122760e-03	ci right 3.589361e-03	k: 804	n:240000
ST8SIA2   240000 perm   72 sec   (3341 perm/sec)   p_kst 3.350000e-03   p_cons 2.708625e-01   p_joint 4.691667e-03

Joint ci ratio: 1.142845e-01	ci left: 4.416220e-03	ci right 4.955362e-03	k: 1170	n:250000
Cons ci ratio: 1.286684e-02	ci left: 2.690029e-01	ci right 2.724904e-01	k: 67686	n:250000
KS ci ratio: 1.354302e-01	ci left: 3.113745e-03	ci right 3.569889e-03	k: 834	n:250000
ST8SIA2   250000 perm   76 sec   (3294 perm/sec)   p_kst 3.336000e-03   p_cons 2.707440e-01   p_joint 4.680000e-03

Joint ci ratio: 1.109198e-01	ci left: 4.515502e-03	ci right 5.049475e-03	k: 1242	n:260000
Cons ci ratio: 1.261090e-02	ci left: 2.692269e-01	ci right 2.726474e-01	k: 70443	n:260000
KS ci ratio: 1.329078e-01	ci left: 3.112931e-03	ci right 3.559792e-03	k: 866	n:260000
ST8SIA2   260000 perm   80 sec   (3248 perm/sec)   p_kst 3.330769e-03   p_cons 2.709346e-01   p_joint 4.776923e-03

Joint ci ratio: 1.098691e-01	ci left: 4.434686e-03	ci right 4.953812e-03	k: 1266	n:270000
Cons ci ratio: 1.237938e-02	ci left: 2.691245e-01	ci right 2.724805e-01	k: 73116	n:270000
KS ci ratio: 1.302309e-01	ci left: 3.126584e-03	ci right 3.565665e-03	k: 902	n:270000
ST8SIA2   270000 perm   84 sec   (3199 perm/sec)   p_kst 3.340741e-03   p_cons 2.708000e-01   p_joint 4.688889e-03

Joint ci ratio: 1.104490e-01	ci left: 4.231130e-03	ci right 4.729212e-03	k: 1253	n:280000
Cons ci ratio: 1.215994e-02	ci left: 2.690370e-01	ci right 2.723320e-01	k: 75791	n:280000
KS ci ratio: 1.280520e-01	ci left: 3.122057e-03	ci right 3.552610e-03	k: 933	n:280000
ST8SIA2   280000 perm   89 sec   (3144 perm/sec)   p_kst 3.332143e-03   p_cons 2.706821e-01   p_joint 4.475000e-03

Joint ci ratio: 1.085190e-01	ci left: 4.236153e-03	ci right 4.725555e-03	k: 1298	n:290000
Cons ci ratio: 1.194812e-02	ci left: 2.690766e-01	ci right 2.723142e-01	k: 78501	n:290000
KS ci ratio: 1.262417e-01	ci left: 3.104540e-03	ci right 3.526172e-03	k: 960	n:290000
ST8SIA2   290000 perm   94 sec   (3099 perm/sec)   p_kst 3.310345e-03   p_cons 2.706931e-01   p_joint 4.475862e-03

Joint ci ratio: 1.065674e-01	ci left: 4.250646e-03	ci right 4.732337e-03	k: 1346	n:300000
Cons ci ratio: 1.175464e-02	ci left: 2.688577e-01	ci right 2.720400e-01	k: 81134	n:300000
KS ci ratio: 1.240659e-01	ci left: 3.110841e-03	ci right 3.525512e-03	k: 994	n:300000
ST8SIA2   300000 perm   98 sec   (3060 perm/sec)   p_kst 3.313333e-03   p_cons 2.704467e-01   p_joint 4.486667e-03

Joint ci ratio: 1.053259e-01	ci left: 4.214014e-03	ci right 4.685646e-03	k: 1378	n:310000
Cons ci ratio: 1.156846e-02	ci left: 2.687146e-01	ci right 2.718445e-01	k: 83786	n:310000
KS ci ratio: 1.221180e-01	ci left: 3.110539e-03	ci right 3.518188e-03	k: 1026	n:310000
ST8SIA2   310000 perm   103 sec   (3023 perm/sec)   p_kst 3.309677e-03   p_cons 2.702774e-01   p_joint 4.445161e-03

Joint ci ratio: 1.040527e-01	ci left: 4.185791e-03	ci right 4.648254e-03	k: 1412	n:320000
Cons ci ratio: 1.137958e-02	ci left: 2.689708e-01	ci right 2.720521e-01	k: 86563	n:320000
KS ci ratio: 1.204303e-01	ci left: 3.101209e-03	ci right 3.501619e-03	k: 1055	n:320000
ST8SIA2   320000 perm   107 sec   (2985 perm/sec)   p_kst 3.296875e-03   p_cons 2.705094e-01   p_joint 4.412500e-03

Joint ci ratio: 1.025049e-01	ci left: 4.185886e-03	ci right 4.641066e-03	k: 1455	n:330000
Cons ci ratio: 1.120507e-02	ci left: 2.690212e-01	ci right 2.720556e-01	k: 89277	n:330000
KS ci ratio: 1.187009e-01	ci left: 3.098363e-03	ci right 3.492257e-03	k: 1086	n:330000
ST8SIA2   330000 perm   112 sec   (2947 perm/sec)   p_kst 3.290909e-03   p_cons 2.705364e-01   p_joint 4.409091e-03

Joint ci ratio: 1.008553e-01	ci left: 4.200360e-03	ci right 4.649328e-03	k: 1503	n:340000
Cons ci ratio: 1.103934e-02	ci left: 2.690338e-01	ci right 2.720231e-01	k: 91979	n:340000
KS ci ratio: 1.168345e-01	ci left: 3.107144e-03	ci right 3.495515e-03	k: 1121	n:340000
ST8SIA2   340000 perm   117 sec   (2911 perm/sec)   p_kst 3.297059e-03   p_cons 2.705265e-01   p_joint 4.420588e-03

Joint ci ratio: 9.387644e-02	ci left: 4.724355e-03	ci right 5.192471e-03	k: 1734	n:350000
Cons ci ratio: 1.087776e-02	ci left: 2.691543e-01	ci right 2.721009e-01	k: 94719	n:350000
KS ci ratio: 1.153540e-01	ci left: 3.098819e-03	ci right 3.480907e-03	k: 1150	n:350000
ST8SIA2   350000 perm   122 sec   (2877 perm/sec)   p_kst 3.285714e-03   p_cons 2.706257e-01   p_joint 4.954286e-03

Joint ci ratio: 9.323714e-02	ci left: 4.658222e-03	ci right 5.116470e-03	k: 1758	n:360000
Cons ci ratio: 1.072858e-02	ci left: 2.690660e-01	ci right 2.719710e-01	k: 97386	n:360000
KS ci ratio: 1.134949e-01	ci left: 3.115276e-03	ci right 3.492788e-03	k: 1188	n:360000
ST8SIA2   360000 perm   127 sec   (2842 perm/sec)   p_kst 3.300000e-03   p_cons 2.705167e-01   p_joint 4.883333e-03

Joint ci ratio: 9.250643e-02	ci left: 4.606236e-03	ci right 5.055627e-03	k: 1786	n:370000
Cons ci ratio: 1.058661e-02	ci left: 2.689369e-01	ci right 2.718018e-01	k: 100036	n:370000
KS ci ratio: 1.119979e-01	ci left: 3.115127e-03	ci right 3.487313e-03	k: 1220	n:370000
ST8SIA2   370000 perm   132 sec   (2808 perm/sec)   p_kst 3.297297e-03   p_cons 2.703676e-01   p_joint 4.827027e-03

Joint ci ratio: 9.141379e-02	ci left: 4.595574e-03	ci right 5.038345e-03	k: 1829	n:380000
Cons ci ratio: 1.075739e-02	ci left: 2.575577e-01	ci right 2.603459e-01	k: 98401	n:380000
KS ci ratio: 1.104261e-01	ci left: 3.122694e-03	ci right 3.490207e-03	k: 1255	n:380000
ST8SIA2   380000 perm   137 sec   (2775 perm/sec)   p_kst 3.302632e-03   p_cons 2.589500e-01   p_joint 4.813158e-03

Joint ci ratio: 9.031053e-02	ci left: 4.590501e-03	ci right 5.027163e-03	k: 1874	n:390000
Cons ci ratio: 1.062621e-02	ci left: 2.573005e-01	ci right 2.600518e-01	k: 100883	n:390000
KS ci ratio: 1.087919e-01	ci left: 3.137391e-03	ci right 3.500820e-03	k: 1293	n:390000
ST8SIA2   390000 perm   142 sec   (2743 perm/sec)   p_kst 3.315385e-03   p_cons 2.586744e-01   p_joint 4.805128e-03

Joint ci ratio: 8.894421e-02	ci left: 4.617491e-03	ci right 5.049730e-03	k: 1932	n:400000
Cons ci ratio: 1.049280e-02	ci left: 2.573085e-01	ci right 2.600250e-01	k: 103466	n:400000
KS ci ratio: 1.071475e-01	ci left: 3.156257e-03	ci right 3.515997e-03	k: 1333	n:400000
ST8SIA2   400000 perm   147 sec   (2712 perm/sec)   p_kst 3.332500e-03   p_cons 2.586650e-01   p_joint 4.830000e-03

Joint ci ratio: 8.869627e-02	ci left: 4.531094e-03	ci right 4.954001e-03	k: 1943	n:410000
Cons ci ratio: 1.036766e-02	ci left: 2.571920e-01	ci right 2.598748e-01	k: 105998	n:410000
KS ci ratio: 1.054601e-01	ci left: 3.181367e-03	ci right 3.537904e-03	k: 1376	n:410000
ST8SIA2   410000 perm   153 sec   (2681 perm/sec)   p_kst 3.356098e-03   p_cons 2.585317e-01   p_joint 4.739024e-03

Joint ci ratio: 8.900077e-02	ci left: 4.392932e-03	ci right 4.804425e-03	k: 1930	n:420000
Cons ci ratio: 1.024644e-02	ci left: 2.570980e-01	ci right 2.597482e-01	k: 108537	n:420000
KS ci ratio: 1.045915e-01	ci left: 3.158942e-03	ci right 3.509870e-03	k: 1399	n:420000
ST8SIA2   420000 perm   158 sec   (2651 perm/sec)   p_kst 3.330952e-03   p_cons 2.584214e-01   p_joint 4.595238e-03

Joint ci ratio: 8.476615e-02	ci left: 4.738996e-03	ci right 5.160740e-03	k: 2127	n:430000
Cons ci ratio: 1.012986e-02	ci left: 2.569899e-01	ci right 2.596087e-01	k: 111068	n:430000
KS ci ratio: 1.032719e-01	ci left: 3.167023e-03	ci right 3.514141e-03	k: 1435	n:430000
ST8SIA2   430000 perm   164 sec   (2621 perm/sec)   p_kst 3.337209e-03   p_cons 2.582977e-01   p_joint 4.946512e-03

Joint ci ratio: 8.578964e-02	ci left: 4.520057e-03	ci right 4.927417e-03	k: 2077	n:440000
Cons ci ratio: 1.001017e-02	ci left: 2.571546e-01	ci right 2.597440e-01	k: 113717	n:440000
KS ci ratio: 1.018275e-01	ci left: 3.185839e-03	ci right 3.529843e-03	k: 1476	n:440000
ST8SIA2   440000 perm   170 sec   (2592 perm/sec)   p_kst 3.354545e-03   p_cons 2.584477e-01   p_joint 4.720455e-03

Joint ci ratio: 8.479554e-02	ci left: 4.526178e-03	ci right 4.929129e-03	k: 2126	n:450000
Cons ci ratio: 9.898294e-03	ci left: 2.571703e-01	ci right 2.597306e-01	k: 116302	n:450000
KS ci ratio: 1.006085e-01	ci left: 3.193018e-03	ci right 3.533426e-03	k: 1512	n:450000
ST8SIA2   450000 perm   175 sec   (2564 perm/sec)   p_kst 3.360000e-03   p_cons 2.584489e-01   p_joint 4.724444e-03

Joint ci ratio: 8.389335e-02	ci left: 4.525673e-03	ci right 4.924083e-03	k: 2172	n:460000
Cons ci ratio: 9.789142e-03	ci left: 2.572222e-01	ci right 2.597547e-01	k: 118904	n:460000
KS ci ratio: 9.956135e-02	ci left: 3.191428e-03	ci right 3.527919e-03	k: 1544	n:460000
ST8SIA2   460000 perm   181 sec   (2536 perm/sec)   p_kst 3.356522e-03   p_cons 2.584870e-01   p_joint 4.721739e-03

Outputting figure to mutsig2_images.part000000000167/ST8SIA2.4_1152_460000_0.0033565_0.25849_0.0047217.png
                gene_name: ST8SIA2
               theta_stop: 0.100 
                    nperm: 460000 
                     p_ks: 0.0034 
        ci_ks_bounds_left: 0.0032 
       ci_ks_bounds_right: 0.0035 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.0047 
     ci_joint_bounds_left: 0.0045 
    ci_joint_bounds_right: 0.0049 

Current progress: 60 percent done.
SRP54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.244499e-02	ci left: 5.836966e-01	ci right 6.030490e-01	k: 5934	n:10000
KS ci ratio: 3.335384e-02	ci left: 5.702543e-01	ci right 5.896991e-01	k: 5800	n:10000
SRP54   10000 perm   2 sec   (5920 perm/sec)   p_kst 5.800000e-01   p_cons 5.934000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/SRP54.3_1575_10000_0.58_0.5934_1.png
                gene_name: SRP54
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
SRR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.585051e-02	ci left: 6.877856e-01	ci right 7.058996e-01	k: 6969	n:10000
Cons ci ratio: 1.638534e-02	ci left: 8.441744e-01	ci right 8.582204e-01	k: 8513	n:10000
KS ci ratio: 4.445889e-02	ci left: 4.275470e-01	ci right 4.470895e-01	k: 4373	n:10000
SRR   10000 perm   2 sec   (6244 perm/sec)   p_kst 4.373000e-01   p_cons 8.513000e-01   p_joint 6.969000e-01

Outputting figure to mutsig2_images.part000000000167/SRR.3_1051_10000_0.4373_0.8513_0.6969.png
                gene_name: SRR
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 64 percent done.
SSBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.282789e-01	ci left: 7.989663e-02	ci right 9.094628e-02	k: 853	n:10000
Cons ci ratio: 1.728722e-01	ci left: 4.465920e-02	ci right 5.320602e-02	k: 488	n:10000
KS ci ratio: 1.621688e-01	ci left: 5.070795e-02	ci right 5.975335e-02	k: 551	n:10000
SSBP1   10000 perm   2 sec   (6616 perm/sec)   p_kst 5.510000e-02   p_cons 4.880000e-02   p_joint 8.530000e-02

Joint ci ratio: 9.252709e-02	ci left: 7.852716e-02	ci right 8.619478e-02	k: 1646	n:20000
Cons ci ratio: 1.229707e-01	ci left: 4.536948e-02	ci right 5.136270e-02	k: 966	n:20000
KS ci ratio: 1.155622e-01	ci left: 5.124802e-02	ci right 5.758231e-02	k: 1087	n:20000
SSBP1   20000 perm   3 sec   (5820 perm/sec)   p_kst 5.435000e-02   p_cons 4.830000e-02   p_joint 8.230000e-02

Joint ci ratio: 7.488169e-02	ci left: 8.055721e-02	ci right 8.685702e-02	k: 2510	n:30000
Cons ci ratio: 1.003877e-01	ci left: 4.593359e-02	ci right 5.082101e-02	k: 1450	n:30000
KS ci ratio: 9.478754e-02	ci left: 5.137128e-02	ci right 5.651553e-02	k: 1617	n:30000
SSBP1   30000 perm   5 sec   (5520 perm/sec)   p_kst 5.390000e-02   p_cons 4.833333e-02   p_joint 8.366667e-02

Joint ci ratio: 6.525465e-02	ci left: 8.004334e-02	ci right 8.546741e-02	k: 3309	n:40000
Cons ci ratio: 8.693079e-02	ci left: 4.626824e-02	ci right 5.049763e-02	k: 1934	n:40000
KS ci ratio: 8.282857e-02	ci left: 5.082452e-02	ci right 5.524065e-02	k: 2120	n:40000
SSBP1   40000 perm   8 sec   (5306 perm/sec)   p_kst 5.300000e-02   p_cons 4.835000e-02   p_joint 8.272500e-02

Outputting figure to mutsig2_images.part000000000167/SSBP1.3_471_40000_0.053_0.04835_0.082725.png
                gene_name: SSBP1
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.085 

Current progress: 65 percent done.
SSFA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.852541e-03	ci left: 9.824212e-01	ci right 9.872903e-01	k: 9850	n:10000
Cons ci ratio: 5.900626e-02	ci left: 2.970746e-01	ci right 3.152384e-01	k: 3061	n:10000
KS ci ratio: 1.560120e-02	ci left: 8.564111e-01	ci right 8.699766e-01	k: 8633	n:10000
SSFA2   10000 perm   2 sec   (4669 perm/sec)   p_kst 8.633000e-01   p_cons 3.061000e-01   p_joint 9.850000e-01

Outputting figure to mutsig2_images.part000000000167/SSFA2.3_3948_10000_0.8633_0.3061_0.985.png
                gene_name: SSFA2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 67 percent done.
SSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.224432e-02	ci left: 3.506835e-01	ci right 3.695981e-01	k: 3601	n:10000
Cons ci ratio: 8.624746e-02	ci left: 1.637654e-01	ci right 1.786266e-01	k: 1711	n:10000
KS ci ratio: 1.693796e-02	ci left: 8.354145e-01	ci right 8.497853e-01	k: 8427	n:10000
SSR1   10000 perm   2 sec   (6661 perm/sec)   p_kst 8.427000e-01   p_cons 1.711000e-01   p_joint 3.601000e-01

Outputting figure to mutsig2_images.part000000000167/SSR1.3_893_10000_0.8427_0.1711_0.3601.png
                gene_name: SSR1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 69 percent done.
SSRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.384107e-02	ci left: 4.344288e-01	ci right 4.540037e-01	k: 4442	n:10000
KS ci ratio: 2.200419e-02	ci left: 7.519090e-01	ci right 7.687391e-01	k: 7604	n:10000
SSRP1   10000 perm   2 sec   (5899 perm/sec)   p_kst 7.604000e-01   p_cons 4.442000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/SSRP1.3_2194_10000_0.7604_0.4442_1.png
                gene_name: SSRP1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
SSTR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.272974e-02	ci left: 2.168465e-01	ci right 2.333139e-01	k: 2250	n:10000
Cons ci ratio: 5.413272e-02	ci left: 3.345866e-01	ci right 3.533044e-01	k: 3439	n:10000
KS ci ratio: 6.138026e-02	ci left: 2.807224e-01	ci right 2.986003e-01	k: 2896	n:10000
SSTR2   10000 perm   1 sec   (6891 perm/sec)   p_kst 2.896000e-01   p_cons 3.439000e-01   p_joint 2.250000e-01

Outputting figure to mutsig2_images.part000000000167/SSTR2.3_1114_10000_0.2896_0.3439_0.225.png
                gene_name: SSTR2
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 73 percent done.
ST14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.244895e-02	ci left: 3.488943e-01	ci right 3.677882e-01	k: 3583	n:10000
Cons ci ratio: 3.609511e-02	ci left: 5.312726e-01	ci right 5.509035e-01	k: 5411	n:10000
KS ci ratio: 6.493302e-02	ci left: 2.583481e-01	ci right 2.757878e-01	k: 2670	n:10000
ST14   10000 perm   2 sec   (5603 perm/sec)   p_kst 2.670000e-01   p_cons 5.411000e-01   p_joint 3.583000e-01

Outputting figure to mutsig2_images.part000000000167/ST14.3_2644_10000_0.267_0.5411_0.3583.png
                gene_name: ST14
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 75 percent done.
ST6GALNAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.781424e-02	ci left: 6.557528e-01	ci right 6.743510e-01	k: 6651	n:10000
KS ci ratio: 3.733377e-02	ci left: 5.144559e-01	ci right 5.341300e-01	k: 5243	n:10000
ST6GALNAC1   10000 perm   2 sec   (5994 perm/sec)   p_kst 5.243000e-01   p_cons 6.651000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/ST6GALNAC1.3_1839_10000_0.5243_0.6651_1.png
                gene_name: ST6GALNAC1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
ST6GALNAC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.090974e-02	ci left: 7.702306e-01	ci right 7.866069e-01	k: 7785	n:10000
Cons ci ratio: 3.092077e-02	ci left: 6.067866e-01	ci right 6.259455e-01	k: 6164	n:10000
KS ci ratio: 3.697613e-02	ci left: 5.192595e-01	ci right 5.389235e-01	k: 5291	n:10000
ST6GALNAC6   10000 perm   2 sec   (6631 perm/sec)   p_kst 5.291000e-01   p_cons 6.164000e-01   p_joint 7.785000e-01

Outputting figure to mutsig2_images.part000000000167/ST6GALNAC6.3_1026_10000_0.5291_0.6164_0.7785.png
                gene_name: ST6GALNAC6
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 78 percent done.
ST7L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.605823e-02	ci left: 3.190972e-01	ci right 3.376029e-01	k: 3283	n:10000
Cons ci ratio: 1.420057e-01	ci left: 6.575174e-02	ci right 7.590000e-02	k: 707	n:10000
KS ci ratio: 5.006139e-02	ci left: 3.704727e-01	ci right 3.895972e-01	k: 3800	n:10000
ST7L   10000 perm   2 sec   (6040 perm/sec)   p_kst 3.800000e-01   p_cons 7.070000e-02   p_joint 3.283000e-01

Joint ci ratio: 3.358000e-02	ci left: 3.983854e-01	ci right 4.120422e-01	k: 8104	n:20000
Cons ci ratio: 9.682007e-02	ci left: 7.207091e-02	ci right 7.945299e-02	k: 1514	n:20000
KS ci ratio: 3.597633e-02	ci left: 3.657437e-01	ci right 3.791934e-01	k: 7449	n:20000
ST7L   20000 perm   4 sec   (5294 perm/sec)   p_kst 3.724500e-01   p_cons 7.570000e-02   p_joint 4.052000e-01

Outputting figure to mutsig2_images.part000000000167/ST7L.3_1827_20000_0.37245_0.0757_0.4052.png
                gene_name: ST7L
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 80 percent done.
ST8SIA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.698429e-02	ci left: 2.464796e-01	ci right 2.636633e-01	k: 2550	n:10000
Cons ci ratio: 3.645999e-02	ci left: 5.262664e-01	ci right 5.459125e-01	k: 5361	n:10000
KS ci ratio: 1.053044e-01	ci left: 1.152552e-01	ci right 1.281660e-01	k: 1216	n:10000
ST8SIA1   10000 perm   2 sec   (6516 perm/sec)   p_kst 1.216000e-01   p_cons 5.361000e-01   p_joint 2.550000e-01

Joint ci ratio: 5.478665e-02	ci left: 1.981862e-01	ci right 2.094001e-01	k: 4075	n:20000
Cons ci ratio: 2.481858e-02	ci left: 5.480800e-01	ci right 5.619041e-01	k: 11100	n:20000
KS ci ratio: 7.614660e-02	ci left: 1.125272e-01	ci right 1.214845e-01	k: 2339	n:20000
ST8SIA1   20000 perm   4 sec   (5711 perm/sec)   p_kst 1.169500e-01   p_cons 5.550000e-01   p_joint 2.037500e-01

Outputting figure to mutsig2_images.part000000000167/ST8SIA1.3_1091_20000_0.11695_0.555_0.20375.png
                gene_name: ST8SIA1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 82 percent done.
ST8SIA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.406402e-02	ci left: 5.599267e-01	ci right 5.794327e-01	k: 5697	n:10000
Cons ci ratio: 3.920196e-02	ci left: 4.900514e-01	ci right 5.097486e-01	k: 4999	n:10000
KS ci ratio: 4.303352e-02	ci left: 4.436076e-01	ci right 4.632196e-01	k: 4534	n:10000
ST8SIA6   10000 perm   2 sec   (6160 perm/sec)   p_kst 4.534000e-01   p_cons 4.999000e-01   p_joint 5.697000e-01

Outputting figure to mutsig2_images.part000000000167/ST8SIA6.3_1229_10000_0.4534_0.4999_0.5697.png
                gene_name: ST8SIA6
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 84 percent done.
SRPRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.261332e-02	ci left: 5.811882e-01	ci right 6.005589e-01	k: 5909	n:10000
Cons ci ratio: 4.154516e-02	ci left: 4.610765e-01	ci right 4.807405e-01	k: 4709	n:10000
KS ci ratio: 4.419792e-02	ci left: 4.304391e-01	ci right 4.499957e-01	k: 4402	n:10000
SRPRB   10000 perm   1 sec   (6771 perm/sec)   p_kst 4.402000e-01   p_cons 4.709000e-01   p_joint 5.909000e-01

Outputting figure to mutsig2_images.part000000000167/SRPRB.2_844_10000_0.4402_0.4709_0.5909.png
                gene_name: SRPRB
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 85 percent done.
SS18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.675368e-01	ci left: 4.753733e-02	ci right 5.632602e-02	k: 518	n:10000
Cons ci ratio: 1.594356e-01	ci left: 5.243929e-02	ci right 6.162089e-02	k: 569	n:10000
KS ci ratio: 7.776672e-02	ci left: 1.946611e-01	ci right 2.105125e-01	k: 2025	n:10000
SS18   10000 perm   2 sec   (6300 perm/sec)   p_kst 2.025000e-01   p_cons 5.690000e-02   p_joint 5.180000e-02

Joint ci ratio: 1.189533e-01	ci left: 4.842873e-02	ci right 5.460248e-02	k: 1029	n:20000
Cons ci ratio: 1.131622e-01	ci left: 5.338848e-02	ci right 5.984119e-02	k: 1131	n:20000
KS ci ratio: 5.522945e-02	ci left: 1.956132e-01	ci right 2.067738e-01	k: 4023	n:20000
SS18   20000 perm   4 sec   (5591 perm/sec)   p_kst 2.011500e-01   p_cons 5.655000e-02   p_joint 5.145000e-02

Joint ci ratio: 1.113569e-01	ci left: 3.745367e-02	ci right 4.190271e-02	k: 1189	n:30000
Cons ci ratio: 9.369085e-02	ci left: 5.254451e-02	ci right 5.774206e-02	k: 1653	n:30000
KS ci ratio: 4.538684e-02	ci left: 1.945939e-01	ci right 2.036644e-01	k: 5973	n:30000
SS18   30000 perm   6 sec   (5309 perm/sec)   p_kst 1.991000e-01   p_cons 5.510000e-02   p_joint 3.963333e-02

Joint ci ratio: 9.601890e-02	ci left: 3.807617e-02	ci right 4.194097e-02	k: 1599	n:40000
Cons ci ratio: 8.070096e-02	ci left: 5.344779e-02	ci right 5.796698e-02	k: 2227	n:40000
KS ci ratio: 3.938136e-02	ci left: 1.946006e-01	ci right 2.024432e-01	k: 7940	n:40000
SS18   40000 perm   8 sec   (5135 perm/sec)   p_kst 1.985000e-01   p_cons 5.567500e-02   p_joint 3.997500e-02

Outputting figure to mutsig2_images.part000000000167/SS18.2_1301_40000_0.1985_0.055675_0.039975.png
                gene_name: SS18
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.042 

Current progress: 87 percent done.
SSB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.514891e-02	ci left: 6.993822e-01	ci right 7.172963e-01	k: 7084	n:10000
KS ci ratio: 1.296109e-01	ci left: 7.834394e-02	ci right 8.929994e-02	k: 837	n:10000
SSB   10000 perm   2 sec   (6530 perm/sec)   p_kst 8.370000e-02   p_cons 7.084000e-01   p_joint 1

Joint ci ratio: 2.162338e-02	ci left: 6.148864e-01	ci right 6.283782e-01	k: 12433	n:20000
Cons ci ratio: 1.771026e-02	ci left: 7.037567e-01	ci right 7.163822e-01	k: 14202	n:20000
KS ci ratio: 9.333221e-02	ci left: 7.725487e-02	ci right 8.486745e-02	k: 1620	n:20000
SSB   20000 perm   4 sec   (5664 perm/sec)   p_kst 8.100000e-02   p_cons 7.101000e-01   p_joint 6.216500e-01

Outputting figure to mutsig2_images.part000000000167/SSB.2_1271_20000_0.081_0.7101_0.62165.png
                gene_name: SSB
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 89 percent done.
SSBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.975051e-02	ci left: 2.918206e-01	ci right 3.098956e-01	k: 3008	n:10000
Cons ci ratio: 9.751786e-02	ci left: 1.322754e-01	ci right 1.459356e-01	k: 1390	n:10000
KS ci ratio: 1.115117e-02	ci left: 9.198691e-01	ci right 9.302817e-01	k: 9252	n:10000
SSBP2   10000 perm   2 sec   (6599 perm/sec)   p_kst 9.252000e-01   p_cons 1.390000e-01   p_joint 3.008000e-01

Outputting figure to mutsig2_images.part000000000167/SSBP2.2_1154_10000_0.9252_0.139_0.3008.png
                gene_name: SSBP2
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 91 percent done.
SSU72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.320349e-02	ci left: 5.724607e-01	ci right 5.918914e-01	k: 5822	n:10000
KS ci ratio: 1.508864e-02	ci left: 8.642720e-01	ci right 8.775111e-01	k: 8710	n:10000
SSU72   10000 perm   1 sec   (7084 perm/sec)   p_kst 8.710000e-01   p_cons 5.822000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/SSU72.2_605_10000_0.871_0.5822_1.png
                gene_name: SSU72
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
ST3GAL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.080449e-02	ci left: 1.827459e-01	ci right 1.982349e-01	k: 1904	n:10000
Cons ci ratio: 3.958796e-02	ci left: 4.851533e-01	ci right 5.048496e-01	k: 4950	n:10000
KS ci ratio: 1.112712e-01	ci left: 1.042243e-01	ci right 1.166037e-01	k: 1103	n:10000
ST3GAL4   10000 perm   1 sec   (6748 perm/sec)   p_kst 1.103000e-01   p_cons 4.950000e-01   p_joint 1.904000e-01

Joint ci ratio: 2.599872e-02	ci left: 5.250054e-01	ci right 5.388853e-01	k: 10639	n:20000
Cons ci ratio: 2.792515e-02	ci left: 4.892966e-01	ci right 5.032044e-01	k: 9925	n:20000
KS ci ratio: 7.793027e-02	ci left: 1.079067e-01	ci right 1.167064e-01	k: 2245	n:20000
ST3GAL4   20000 perm   3 sec   (5887 perm/sec)   p_kst 1.122500e-01   p_cons 4.962500e-01   p_joint 5.319500e-01

Outputting figure to mutsig2_images.part000000000167/ST3GAL4.2_1030_20000_0.11225_0.49625_0.53195.png
                gene_name: ST3GAL4
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.54 

Current progress: 95 percent done.
ST6GALNAC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.236972e-02	ci left: 9.037070e-01	ci right 9.150532e-01	k: 9095	n:10000
Cons ci ratio: 7.166236e-02	ci left: 2.219788e-01	ci right 2.385786e-01	k: 2302	n:10000
KS ci ratio: 1.282976e-02	ci left: 8.973393e-01	ci right 9.090246e-01	k: 9033	n:10000
ST6GALNAC2   10000 perm   2 sec   (6521 perm/sec)   p_kst 9.033000e-01   p_cons 2.302000e-01   p_joint 9.095000e-01

Outputting figure to mutsig2_images.part000000000167/ST6GALNAC2.2_1161_10000_0.9033_0.2302_0.9095.png
                gene_name: ST6GALNAC2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 96 percent done.
ST6GALNAC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.910384e-01	ci left: 3.652992e-02	ci right 4.434069e-02	k: 403	n:10000
Cons ci ratio: 3.058183e-02	ci left: 6.120101e-01	ci right 6.311190e-01	k: 6216	n:10000
KS ci ratio: 3.527114e-01	ci left: 1.005013e-02	ci right 1.444087e-02	k: 121	n:10000
ST6GALNAC4   10000 perm   1 sec   (6879 perm/sec)   p_kst 1.210000e-02   p_cons 6.216000e-01   p_joint 4.030000e-02

Joint ci ratio: 1.253735e-01	ci left: 4.367138e-02	ci right 4.956134e-02	k: 931	n:20000
Cons ci ratio: 2.170850e-02	ci left: 6.130303e-01	ci right 6.265349e-01	k: 12396	n:20000
KS ci ratio: 2.616225e-01	ci left: 9.647644e-03	ci right 1.259707e-02	k: 221	n:20000
ST6GALNAC4   20000 perm   3 sec   (5932 perm/sec)   p_kst 1.105000e-02   p_cons 6.198000e-01   p_joint 4.655000e-02

Joint ci ratio: 1.068978e-01	ci left: 4.060227e-02	ci right 4.522012e-02	k: 1286	n:30000
Cons ci ratio: 1.767886e-02	ci left: 6.155155e-01	ci right 6.265277e-01	k: 18631	n:30000
KS ci ratio: 2.142673e-01	ci left: 9.850602e-03	ci right 1.224550e-02	k: 330	n:30000
ST6GALNAC4   30000 perm   5 sec   (5602 perm/sec)   p_kst 1.100000e-02   p_cons 6.210333e-01   p_joint 4.286667e-02

Joint ci ratio: 8.852901e-02	ci left: 4.465275e-02	ci right 4.881337e-02	k: 1868	n:40000
Cons ci ratio: 1.528148e-02	ci left: 6.171518e-01	ci right 6.266805e-01	k: 24877	n:40000
KS ci ratio: 1.884616e-01	ci left: 9.691048e-03	ci right 1.173092e-02	k: 427	n:40000
ST6GALNAC4   40000 perm   7 sec   (5392 perm/sec)   p_kst 1.067500e-02   p_cons 6.219250e-01   p_joint 4.670000e-02

Joint ci ratio: 7.886915e-02	ci left: 4.522015e-02	ci right 4.895266e-02	k: 2353	n:50000
Cons ci ratio: 1.370445e-02	ci left: 6.164100e-01	ci right 6.249359e-01	k: 31034	n:50000
KS ci ratio: 1.723502e-01	ci left: 9.356953e-03	ci right 1.114060e-02	k: 511	n:50000
ST6GALNAC4   50000 perm   10 sec   (5225 perm/sec)   p_kst 1.022000e-02   p_cons 6.206800e-01   p_joint 4.706000e-02

Joint ci ratio: 7.434497e-02	ci left: 4.263460e-02	ci right 4.594299e-02	k: 2656	n:60000
Cons ci ratio: 1.247229e-02	ci left: 6.182229e-01	ci right 6.259986e-01	k: 37327	n:60000
KS ci ratio: 1.564867e-01	ci left: 9.539588e-03	ci right 1.117496e-02	k: 620	n:60000
ST6GALNAC4   60000 perm   12 sec   (5080 perm/sec)   p_kst 1.033333e-02   p_cons 6.221167e-01   p_joint 4.426667e-02

Joint ci ratio: 8.273693e-02	ci left: 2.978439e-02	ci right 3.236896e-02	k: 2174	n:70000
Cons ci ratio: 1.157105e-02	ci left: 6.175371e-01	ci right 6.247385e-01	k: 43480	n:70000
KS ci ratio: 1.467843e-01	ci left: 9.344964e-03	ci right 1.083892e-02	k: 705	n:70000
ST6GALNAC4   70000 perm   14 sec   (4951 perm/sec)   p_kst 1.007143e-02   p_cons 6.211429e-01   p_joint 3.105714e-02

Joint ci ratio: 7.729258e-02	ci left: 2.994469e-02	ci right 3.236446e-02	k: 2491	n:80000
Cons ci ratio: 1.083768e-02	ci left: 6.171644e-01	ci right 6.239019e-01	k: 49643	n:80000
KS ci ratio: 1.365250e-01	ci left: 9.503211e-03	ci right 1.090765e-02	k: 815	n:80000
ST6GALNAC4   80000 perm   17 sec   (4837 perm/sec)   p_kst 1.018750e-02   p_cons 6.205375e-01   p_joint 3.113750e-02

Joint ci ratio: 7.247952e-02	ci left: 3.033569e-02	ci right 3.262797e-02	k: 2832	n:90000
Cons ci ratio: 1.021001e-02	ci left: 6.177209e-01	ci right 6.240713e-01	k: 55881	n:90000
KS ci ratio: 1.283643e-01	ci left: 9.596849e-03	ci right 1.092389e-02	k: 922	n:90000
ST6GALNAC4   90000 perm   19 sec   (4731 perm/sec)   p_kst 1.024444e-02   p_cons 6.209000e-01   p_joint 3.146667e-02

Joint ci ratio: 6.846625e-02	ci left: 3.065222e-02	ci right 3.283505e-02	k: 3173	n:100000
Cons ci ratio: 9.680110e-03	ci left: 6.181750e-01	ci right 6.241980e-01	k: 62119	n:100000
KS ci ratio: 1.215114e-01	ci left: 9.673761e-03	ci right 1.093489e-02	k: 1029	n:100000
ST6GALNAC4   100000 perm   22 sec   (4613 perm/sec)   p_kst 1.029000e-02   p_cons 6.211900e-01   p_joint 3.173000e-02

Joint ci ratio: 6.543894e-02	ci left: 3.055616e-02	ci right 3.263227e-02	k: 3474	n:110000
Cons ci ratio: 9.216069e-03	ci left: 6.190085e-01	ci right 6.247487e-01	k: 68407	n:110000
KS ci ratio: 1.161158e-01	ci left: 9.658761e-03	ci right 1.085818e-02	k: 1127	n:110000
ST6GALNAC4   110000 perm   24 sec   (4516 perm/sec)   p_kst 1.024545e-02   p_cons 6.218818e-01   p_joint 3.158182e-02

Joint ci ratio: 6.239777e-02	ci left: 3.084721e-02	ci right 3.284217e-02	k: 3820	n:120000
Cons ci ratio: 8.811032e-03	ci left: 6.198086e-01	ci right 6.253022e-01	k: 74707	n:120000
KS ci ratio: 1.105185e-01	ci left: 9.801278e-03	ci right 1.095590e-02	k: 1244	n:120000
ST6GALNAC4   120000 perm   27 sec   (4430 perm/sec)   p_kst 1.036667e-02   p_cons 6.225583e-01   p_joint 3.183333e-02

Joint ci ratio: 5.440004e-02	ci left: 3.736189e-02	ci right 3.945877e-02	k: 4992	n:130000
Cons ci ratio: 8.472104e-03	ci left: 6.195425e-01	ci right 6.248213e-01	k: 80884	n:130000
KS ci ratio: 1.061331e-01	ci left: 9.833154e-03	ci right 1.094270e-02	k: 1349	n:130000
ST6GALNAC4   130000 perm   30 sec   (4337 perm/sec)   p_kst 1.037692e-02   p_cons 6.221846e-01   p_joint 3.840000e-02

Joint ci ratio: 5.261524e-02	ci left: 3.713142e-02	ci right 3.914491e-02	k: 5338	n:140000
Cons ci ratio: 8.153866e-03	ci left: 6.202193e-01	ci right 6.253042e-01	k: 87187	n:140000
KS ci ratio: 1.026601e-01	ci left: 9.777713e-03	ci right 1.084272e-02	k: 1442	n:140000
ST6GALNAC4   140000 perm   33 sec   (4251 perm/sec)   p_kst 1.030000e-02   p_cons 6.227643e-01   p_joint 3.812857e-02

Joint ci ratio: 5.084206e-02	ci left: 3.714998e-02	ci right 3.909459e-02	k: 5717	n:150000
Cons ci ratio: 7.883383e-03	ci left: 6.199477e-01	ci right 6.248609e-01	k: 93361	n:150000
KS ci ratio: 9.953982e-02	ci left: 9.723677e-03	ci right 1.074872e-02	k: 1534	n:150000
ST6GALNAC4   150000 perm   36 sec   (4172 perm/sec)   p_kst 1.022667e-02   p_cons 6.224067e-01   p_joint 3.811333e-02

Outputting figure to mutsig2_images.part000000000167/ST6GALNAC4.2_929_150000_0.010227_0.62241_0.038113.png
                gene_name: ST6GALNAC4
               theta_stop: 0.100 
                    nperm: 150000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0097 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.039 

Current progress: 98 percent done.
ST7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.222604e-02	ci left: 2.751757e-01	ci right 2.929502e-01	k: 2840	n:10000
KS ci ratio: 3.654068e-02	ci left: 5.251652e-01	ci right 5.448144e-01	k: 5350	n:10000
ST7   10000 perm   2 sec   (6234 perm/sec)   p_kst 5.350000e-01   p_cons 2.840000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000167/ST7.2_1922_10000_0.535_0.284_1.png
                gene_name: ST7
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000167
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 167 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1551>
Subject: Job 9894158: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1551>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000168> was used as the working directory.
Started at Sat Oct  6 00:31:16 2012
Results reported at Sat Oct  6 00:41:00 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000168.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000168.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 168  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000168.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    649.26 sec.
    Max Memory :      3574 MB
    Max Swap   :      5884 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
168
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 168
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 168: processing genes 15056 - 15145
Calculating significance of each gene.
Using projection method.
15056	STAG3L3	1
15057	STAG3L4	1
15058	STAM	7.808178e-01
15059	STAM2	5.172492e-01
15060	STAMBP	6.659261e-01
15061	STAMBPL1	6.068926e-01
15062	STAP1	6.926834e-01
15063	STAP2	1.728597e-01
15064	STAR	6.280372e-01
15065	STARD10	7.655970e-01
15066	STARD13	3.308943e-01
15067	STARD3	9.094267e-01
15068	STARD3NL	2.925277e-01
15069	STARD4	9.162200e-03
15070	STARD5	1
15071	STARD6	3.210173e-01
15072	STARD7	1
15073	STARD8	9.211946e-01
15074	STAT1	2.826161e-01
15075	STAT2	1.409502e-01
15076	STAT3	8.564301e-01
15077	STAT4	6.927483e-01
15078	STAT5A	1
15079	STAT5B	9.232070e-01
15080	STAT6	8.340657e-01
15081	STATH	1
15082	STAU1	9.464198e-01
15083	STAU2	3.396720e-01
15084	STBD1	1.947154e-01
15085	STC1	2.023723e-01
15086	STC2	3.258023e-01
15087	STEAP1	3.912527e-01
15088	STEAP2	6.448454e-01
15089	STEAP3	9.356394e-01
15090	STEAP4	6.526371e-01
15091	STH	4.032529e-01
15092	STIL	1.786396e-01
15093	STIM1	2.515502e-01
15094	STIM2	3.081946e-02
15095	STIP1	3.596340e-01
15096	STK10	5.338359e-01
15097	STK11	1
15098	STK11IP	9.816614e-01
15099	STK16	3.305734e-01
15100	STK17A	8.395670e-01
15101	STK17B	5.947558e-01
15102	STK19	4.496980e-01
15103	STK24	4.158637e-01
15104	STK25	8.849480e-01
15105	STK3	3.619871e-01
15106	STK31	3.257125e-02
15107	STK32A	8.087729e-01
15108	STK32B	5.713064e-02
15109	STK32C	1
15110	STK33	5.867841e-01
15111	STK35	8.410460e-01
15112	STK36	6.902267e-01
15113	STK38	5.057465e-01
15114	STK38L	5.432302e-01
15115	STK39	7.099040e-01
15116	STK4	2.049430e-01
15117	STK40	2.683710e-01
15118	STMN1	2.747559e-01
15119	STMN2	5.572057e-01
15120	STMN3	1
15121	STMN4	2.248553e-01
15122	STOM	7.736086e-01
15123	STOML1	8.113599e-01
15124	STOML2	5.591269e-01
15125	STOML3	2.878150e-01
15126	STON1	1
15127	STON1-GTF2A1L	8.674033e-04
15128	STON2	3.548968e-01
15129	STOX1	4.266064e-01
15130	STOX2	8.942022e-01
15131	STRA13	1
15132	STRA6	3.179870e-01
15133	STRA8	1.143891e-01
15134	STRADA	3.887111e-01
15135	STRADB	4.642610e-01
15136	STRAP	3.680586e-01
15137	STRBP	5.025782e-01
In gene STRC the following bins exceed PROBCAP:
    COAD-AA-3851	categ 6	N = 2371    n = 1	mu =   3.95e-07
15138	STRC	5.232561e-01
15139	STRN	6.304291e-01
15140	STRN3	8.626045e-01
15141	STRN4	5.569421e-01
15142	STS	1.319680e-02
15143	STT3A	5.490718e-01
15144	STT3B	2.214953e-01
15145	STUB1	1
Done

Running MutSig 2:
Scatter job 168: processing genes 15056 - 15145
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
STON1-GTF2A1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.658079e-02	ci left: 4.048206e-01	ci right 4.242292e-01	k: 4145	n:10000
Cons ci ratio: 6.152973e-02	ci left: 2.797318e-01	ci right 2.975915e-01	k: 2886	n:10000
KS ci ratio: 4.286032e-02	ci left: 4.456034e-01	ci right 4.652226e-01	k: 4554	n:10000
STON1-GTF2A1L   10000 perm   3 sec   (3464 perm/sec)   p_kst 4.554000e-01   p_cons 2.886000e-01   p_joint 4.145000e-01

Outputting figure to mutsig2_images.part000000000168/STON1-GTF2A1L.16_3589_10000_0.4554_0.2886_0.4145.png
                gene_name: STON1-GTF2A1L
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 2 percent done.
STK31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.795200e-02	ci left: 5.062518e-01	ci right 5.259388e-01	k: 5161	n:10000
Cons ci ratio: 2.284895e-02	ci left: 7.377518e-01	ci right 7.549045e-01	k: 7464	n:10000
KS ci ratio: 5.262044e-02	ci left: 3.474035e-01	ci right 3.662799e-01	k: 3568	n:10000
STK31   10000 perm   2 sec   (4539 perm/sec)   p_kst 3.568000e-01   p_cons 7.464000e-01   p_joint 5.161000e-01

Outputting figure to mutsig2_images.part000000000168/STK31.10_3156_10000_0.3568_0.7464_0.5161.png
                gene_name: STK31
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 3 percent done.
STIL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.847396e-02	ci left: 3.856991e-01	ci right 4.049619e-01	k: 3953	n:10000
Cons ci ratio: 6.973651e-02	ci left: 2.316560e-01	ci right 2.484957e-01	k: 2400	n:10000
KS ci ratio: 4.092516e-02	ci left: 4.685668e-01	ci right 4.882458e-01	k: 4784	n:10000
STIL   10000 perm   2 sec   (4006 perm/sec)   p_kst 4.784000e-01   p_cons 2.400000e-01   p_joint 3.953000e-01

Outputting figure to mutsig2_images.part000000000168/STIL.9_3931_10000_0.4784_0.24_0.3953.png
                gene_name: STIL
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 5 percent done.
STIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.495838e-02	ci left: 3.278334e-01	ci right 3.464615e-01	k: 3371	n:10000
Cons ci ratio: 3.832596e-02	ci left: 5.013506e-01	ci right 5.210429e-01	k: 5112	n:10000
KS ci ratio: 8.015541e-02	ci left: 1.852067e-01	ci right 2.007725e-01	k: 1929	n:10000
STIM2   10000 perm   2 sec   (4672 perm/sec)   p_kst 1.929000e-01   p_cons 5.112000e-01   p_joint 3.371000e-01

Outputting figure to mutsig2_images.part000000000168/STIM2.8_2358_10000_0.1929_0.5112_0.3371.png
                gene_name: STIM2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 6 percent done.
STAT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.024481e-02	ci left: 6.172347e-01	ci right 6.362914e-01	k: 6268	n:10000
Cons ci ratio: 5.731428e-02	ci left: 3.094718e-01	ci right 3.278340e-01	k: 3186	n:10000
KS ci ratio: 1.841078e-02	ci left: 8.116160e-01	ci right 8.267975e-01	k: 8193	n:10000
STAT2   10000 perm   2 sec   (4817 perm/sec)   p_kst 8.193000e-01   p_cons 3.186000e-01   p_joint 6.268000e-01

Outputting figure to mutsig2_images.part000000000168/STAT2.7_2648_10000_0.8193_0.3186_0.6268.png
                gene_name: STAT2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 8 percent done.
STS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.137175e-01	ci left: 1.001293e-01	ci right 1.123011e-01	k: 1061	n:10000
Cons ci ratio: 3.464415e-02	ci left: 5.516076e-01	ci right 5.711566e-01	k: 5614	n:10000
KS ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
STS   10000 perm   2 sec   (5131 perm/sec)   p_kst 4.150000e-02   p_cons 5.614000e-01   p_joint 1.061000e-01

Joint ci ratio: 8.881717e-02	ci left: 8.479472e-02	ci right 9.272531e-02	k: 1774	n:20000
Cons ci ratio: 2.459080e-02	ci left: 5.526366e-01	ci right 5.664461e-01	k: 11191	n:20000
KS ci ratio: 1.350006e-01	ci left: 3.771321e-02	ci right 4.322141e-02	k: 808	n:20000
STS   20000 perm   4 sec   (4595 perm/sec)   p_kst 4.040000e-02   p_cons 5.595500e-01   p_joint 8.870000e-02

Joint ci ratio: 7.008374e-02	ci left: 9.111414e-02	ci right 9.776464e-02	k: 2832	n:30000
Cons ci ratio: 2.009027e-02	ci left: 5.536264e-01	ci right 5.648954e-01	k: 16778	n:30000
KS ci ratio: 1.085836e-01	ci left: 3.936835e-02	ci right 4.392096e-02	k: 1248	n:30000
STS   30000 perm   7 sec   (4402 perm/sec)   p_kst 4.160000e-02   p_cons 5.592667e-01   p_joint 9.440000e-02

Joint ci ratio: 5.511936e-02	ci left: 1.091475e-01	ci right 1.153589e-01	k: 4489	n:40000
Cons ci ratio: 1.751178e-02	ci left: 5.511896e-01	ci right 5.609523e-01	k: 22243	n:40000
KS ci ratio: 9.018656e-02	ci left: 4.306243e-02	ci right 4.715394e-02	k: 1803	n:40000
STS   40000 perm   9 sec   (4277 perm/sec)   p_kst 4.507500e-02   p_cons 5.560750e-01   p_joint 1.122250e-01

Outputting figure to mutsig2_images.part000000000168/STS.7_1792_40000_0.045075_0.55607_0.11223.png
                gene_name: STS
               theta_stop: 0.090 
                    nperm: 40000 
                     p_ks: 0.045 
        ci_ks_bounds_left: 0.043 
       ci_ks_bounds_right: 0.047 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 10 percent done.
STAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.357332e-02	ci left: 7.256263e-01	ci right 7.430370e-01	k: 7344	n:10000
Cons ci ratio: 1.853496e-02	ci left: 8.095843e-01	ci right 8.248305e-01	k: 8173	n:10000
KS ci ratio: 3.198321e-02	ci left: 5.906213e-01	ci right 6.099202e-01	k: 6003	n:10000
STAT1   10000 perm   2 sec   (5299 perm/sec)   p_kst 6.003000e-01   p_cons 8.173000e-01   p_joint 7.344000e-01

Outputting figure to mutsig2_images.part000000000168/STAT1.6_2349_10000_0.6003_0.8173_0.7344.png
                gene_name: STAT1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 11 percent done.
STON2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.986367e-02	ci left: 7.876620e-01	ci right 8.035654e-01	k: 7957	n:10000
Cons ci ratio: 2.945480e-02	ci left: 6.295976e-01	ci right 6.485213e-01	k: 6391	n:10000
KS ci ratio: 3.759650e-02	ci left: 5.109538e-01	ci right 5.306341e-01	k: 5208	n:10000
STON2   10000 perm   2 sec   (5185 perm/sec)   p_kst 5.208000e-01   p_cons 6.391000e-01   p_joint 7.957000e-01

Outputting figure to mutsig2_images.part000000000168/STON2.6_2738_10000_0.5208_0.6391_0.7957.png
                gene_name: STON2
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 13 percent done.
STT3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.147477e-01	ci left: 9.847268e-02	ci right 1.105588e-01	k: 1044	n:10000
Cons ci ratio: 1.805768e-01	ci left: 4.092429e-02	ci right 4.914339e-02	k: 449	n:10000
KS ci ratio: 7.096209e-02	ci left: 2.254342e-01	ci right 2.421211e-01	k: 2337	n:10000
STT3B   10000 perm   2 sec   (5098 perm/sec)   p_kst 2.337000e-01   p_cons 4.490000e-02   p_joint 1.044000e-01

Joint ci ratio: 8.060316e-02	ci left: 1.014715e-01	ci right 1.100435e-01	k: 2114	n:20000
Cons ci ratio: 1.267345e-01	ci left: 4.275002e-02	ci right 4.858299e-02	k: 912	n:20000
KS ci ratio: 5.056649e-02	ci left: 2.251732e-01	ci right 2.369051e-01	k: 4620	n:20000
STT3B   20000 perm   4 sec   (4498 perm/sec)   p_kst 2.310000e-01   p_cons 4.560000e-02   p_joint 1.057000e-01

Joint ci ratio: 6.556446e-02	ci left: 1.029652e-01	ci right 1.099779e-01	k: 3193	n:30000
Cons ci ratio: 1.044619e-01	ci left: 4.248666e-02	ci right 4.720199e-02	k: 1344	n:30000
KS ci ratio: 4.091722e-02	ci left: 2.294501e-01	ci right 2.390681e-01	k: 7027	n:30000
STT3B   30000 perm   7 sec   (4279 perm/sec)   p_kst 2.342333e-01   p_cons 4.480000e-02   p_joint 1.064333e-01

Joint ci ratio: 5.461370e-02	ci left: 1.109752e-01	ci right 1.172309e-01	k: 4563	n:40000
Cons ci ratio: 9.485163e-02	ci left: 3.900438e-02	ci right 4.291261e-02	k: 1637	n:40000
KS ci ratio: 3.606320e-02	ci left: 2.238959e-01	ci right 2.321436e-01	k: 9120	n:40000
STT3B   40000 perm   10 sec   (4134 perm/sec)   p_kst 2.280000e-01   p_cons 4.092500e-02   p_joint 1.140750e-01

Outputting figure to mutsig2_images.part000000000168/STT3B.6_2545_40000_0.228_0.040925_0.11407.png
                gene_name: STT3B
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 15 percent done.
STAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.722332e-02	ci left: 6.653172e-01	ci right 6.837810e-01	k: 6746	n:10000
Cons ci ratio: 7.726487e-02	ci left: 1.967302e-01	ci right 2.126422e-01	k: 2046	n:10000
KS ci ratio: 5.153763e-03	ci left: 9.803783e-01	ci right 9.855349e-01	k: 9831	n:10000
STAP2   10000 perm   2 sec   (5683 perm/sec)   p_kst 9.831000e-01   p_cons 2.046000e-01   p_joint 6.746000e-01

Outputting figure to mutsig2_images.part000000000168/STAP2.5_1402_10000_0.9831_0.2046_0.6746.png
                gene_name: STAP2
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 16 percent done.
STARD13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.255939e-02	ci left: 5.819908e-01	ci right 6.013557e-01	k: 5917	n:10000
Cons ci ratio: 2.602192e-02	ci left: 6.849632e-01	ci right 7.031237e-01	k: 6941	n:10000
KS ci ratio: 4.146189e-02	ci left: 4.620751e-01	ci right 4.817413e-01	k: 4719	n:10000
STARD13   10000 perm   2 sec   (4427 perm/sec)   p_kst 4.719000e-01   p_cons 6.941000e-01   p_joint 5.917000e-01

Outputting figure to mutsig2_images.part000000000168/STARD13.5_3547_10000_0.4719_0.6941_0.5917.png
                gene_name: STARD13
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 18 percent done.
STK10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.138447e-02	ci left: 1.482523e-01	ci right 1.625490e-01	k: 1553	n:10000
Cons ci ratio: 9.751082e-03	ci left: 9.370311e-01	ci right 9.463095e-01	k: 9418	n:10000
KS ci ratio: 1.714031e-01	ci left: 4.542628e-02	ci right 5.403844e-02	k: 496	n:10000
STK10   10000 perm   2 sec   (4679 perm/sec)   p_kst 4.960000e-02   p_cons 9.418000e-01   p_joint 1.553000e-01

Joint ci ratio: 7.708228e-02	ci left: 1.100691e-01	ci right 1.189433e-01	k: 2289	n:20000
Cons ci ratio: 7.385303e-03	ci left: 9.302145e-01	ci right 9.371588e-01	k: 18675	n:20000
KS ci ratio: 1.211389e-01	ci left: 4.672873e-02	ci right 5.280302e-02	k: 994	n:20000
STK10   20000 perm   5 sec   (4237 perm/sec)   p_kst 4.970000e-02   p_cons 9.337500e-01   p_joint 1.144500e-01

Joint ci ratio: 7.585851e-02	ci left: 7.862445e-02	ci right 8.485683e-02	k: 2451	n:30000
Cons ci ratio: 6.043311e-03	ci left: 9.305877e-01	ci right 9.362613e-01	k: 28004	n:30000
KS ci ratio: 9.991828e-02	ci left: 4.635659e-02	ci right 5.126460e-02	k: 1463	n:30000
STK10   30000 perm   7 sec   (4052 perm/sec)   p_kst 4.876667e-02   p_cons 9.334667e-01   p_joint 8.170000e-02

Outputting figure to mutsig2_images.part000000000168/STK10.5_2983_30000_0.048767_0.93347_0.0817.png
                gene_name: STK10
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.085 

Current progress: 19 percent done.
STK32B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.363244e-03	ci left: 9.414924e-01	ci right 9.504455e-01	k: 9461	n:10000
KS ci ratio: 1.655317e-02	ci left: 8.415252e-01	ci right 8.556711e-01	k: 8487	n:10000
STK32B   10000 perm   2 sec   (5356 perm/sec)   p_kst 8.487000e-01   p_cons 9.461000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STK32B.5_1293_10000_0.8487_0.9461_1.png
                gene_name: STK32B
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
STK36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.582155e-02	ci left: 4.127924e-01	ci right 4.322528e-01	k: 4225	n:10000
Cons ci ratio: 7.528098e-02	ci left: 2.052070e-01	ci right 2.213603e-01	k: 2132	n:10000
KS ci ratio: 4.118018e-02	ci left: 4.654705e-01	ci right 4.851439e-01	k: 4753	n:10000
STK36   10000 perm   2 sec   (4030 perm/sec)   p_kst 4.753000e-01   p_cons 2.132000e-01   p_joint 4.225000e-01

Outputting figure to mutsig2_images.part000000000168/STK36.5_4052_10000_0.4753_0.2132_0.4225.png
                gene_name: STK36
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 23 percent done.
STK40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.233711e-02	ci left: 4.516917e-01	ci right 4.713307e-01	k: 4615	n:10000
Cons ci ratio: 6.247168e-02	ci left: 2.735913e-01	ci right 2.913356e-01	k: 2824	n:10000
KS ci ratio: 4.059863e-02	ci left: 4.725626e-01	ci right 4.922477e-01	k: 4824	n:10000
STK40   10000 perm   2 sec   (6009 perm/sec)   p_kst 4.824000e-01   p_cons 2.824000e-01   p_joint 4.615000e-01

Outputting figure to mutsig2_images.part000000000168/STK40.5_1348_10000_0.4824_0.2824_0.4615.png
                gene_name: STK40
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 24 percent done.
STOX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.533675e-02	ci left: 4.179754e-01	ci right 4.374667e-01	k: 4277	n:10000
Cons ci ratio: 2.475992e-02	ci left: 7.058389e-01	ci right 7.236358e-01	k: 7148	n:10000
KS ci ratio: 7.791142e-02	ci left: 1.940700e-01	ci right 2.099040e-01	k: 2019	n:10000
STOX1   10000 perm   2 sec   (4806 perm/sec)   p_kst 2.019000e-01   p_cons 7.148000e-01   p_joint 4.277000e-01

Outputting figure to mutsig2_images.part000000000168/STOX1.5_2986_10000_0.2019_0.7148_0.4277.png
                gene_name: STOX1
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 26 percent done.
STRBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.230103e-02	ci left: 3.501865e-01	ci right 3.690954e-01	k: 3596	n:10000
Cons ci ratio: 3.308762e-02	ci left: 5.741659e-01	ci right 5.935853e-01	k: 5839	n:10000
KS ci ratio: 6.580662e-02	ci left: 2.532041e-01	ci right 2.705349e-01	k: 2618	n:10000
STRBP   10000 perm   2 sec   (4940 perm/sec)   p_kst 2.618000e-01   p_cons 5.839000e-01   p_joint 3.596000e-01

Outputting figure to mutsig2_images.part000000000168/STRBP.5_2087_10000_0.2618_0.5839_0.3596.png
                gene_name: STRBP
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 27 percent done.
STARD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.439601e-02	ci left: 7.118940e-01	ci right 7.295772e-01	k: 7208	n:10000
Cons ci ratio: 4.829198e-02	ci left: 3.874911e-01	ci right 4.067689e-01	k: 3971	n:10000
KS ci ratio: 3.395993e-02	ci left: 5.614305e-01	ci right 5.809280e-01	k: 5712	n:10000
STARD4   10000 perm   2 sec   (6090 perm/sec)   p_kst 5.712000e-01   p_cons 3.971000e-01   p_joint 7.208000e-01

Outputting figure to mutsig2_images.part000000000168/STARD4.4_638_10000_0.5712_0.3971_0.7208.png
                gene_name: STARD4
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 29 percent done.
STIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.406212e-01	ci left: 6.700893e-02	ci right 7.724202e-02	k: 720	n:10000
Cons ci ratio: 8.507071e-03	ci left: 9.508566e-01	ci right 9.590757e-01	k: 9551	n:10000
KS ci ratio: 2.362105e-01	ci left: 2.362888e-02	ci right 3.005075e-02	k: 267	n:10000
STIM1   10000 perm   2 sec   (5230 perm/sec)   p_kst 2.670000e-02   p_cons 9.551000e-01   p_joint 7.200000e-02

Joint ci ratio: 1.039341e-01	ci left: 6.293881e-02	ci right 6.988790e-02	k: 1327	n:20000
Cons ci ratio: 5.921060e-03	ci left: 9.534778e-01	ci right 9.591885e-01	k: 19128	n:20000
KS ci ratio: 1.640659e-01	ci left: 2.546943e-02	ci right 3.006924e-02	k: 554	n:20000
STIM1   20000 perm   4 sec   (4682 perm/sec)   p_kst 2.770000e-02   p_cons 9.564000e-01   p_joint 6.635000e-02

Joint ci ratio: 8.887230e-02	ci left: 5.818716e-02	ci right 6.363159e-02	k: 1826	n:30000
Cons ci ratio: 4.771656e-03	ci left: 9.551217e-01	ci right 9.597225e-01	k: 28724	n:30000
KS ci ratio: 1.371714e-01	ci left: 2.467957e-02	ci right 2.834624e-02	k: 794	n:30000
STIM1   30000 perm   7 sec   (4518 perm/sec)   p_kst 2.646667e-02   p_cons 9.574667e-01   p_joint 6.086667e-02

Joint ci ratio: 5.557351e-02	ci left: 1.075423e-01	ci right 1.137144e-01	k: 4424	n:40000
Cons ci ratio: 4.170763e-03	ci left: 9.546595e-01	ci right 9.586739e-01	k: 38268	n:40000
KS ci ratio: 1.159598e-01	ci left: 2.616218e-02	ci right 2.940686e-02	k: 1110	n:40000
STIM1   40000 perm   9 sec   (4374 perm/sec)   p_kst 2.775000e-02   p_cons 9.567000e-01   p_joint 1.106000e-01

Joint ci ratio: 6.540806e-02	ci left: 6.482368e-02	ci right 6.922675e-02	k: 3350	n:50000
Cons ci ratio: 3.765234e-03	ci left: 9.540841e-01	ci right 9.577027e-01	k: 47796	n:50000
KS ci ratio: 1.038236e-01	ci left: 2.627899e-02	ci right 2.917619e-02	k: 1385	n:50000
STIM1   50000 perm   12 sec   (4261 perm/sec)   p_kst 2.770000e-02   p_cons 9.559200e-01   p_joint 6.700000e-02

Joint ci ratio: 6.043077e-02	ci left: 6.354952e-02	ci right 6.752596e-02	k: 3931	n:60000
Cons ci ratio: 3.413352e-03	ci left: 9.548373e-01	ci right 9.581184e-01	k: 57390	n:60000
KS ci ratio: 9.484222e-02	ci left: 2.636884e-02	ci right 2.901044e-02	k: 1660	n:60000
STIM1   60000 perm   14 sec   (4166 perm/sec)   p_kst 2.766667e-02   p_cons 9.565000e-01   p_joint 6.551667e-02

Outputting figure to mutsig2_images.part000000000168/STIM1.4_2106_60000_0.027667_0.9565_0.065517.png
                gene_name: STIM1
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.068 

Current progress: 31 percent done.
STK24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.814967e-02	ci left: 2.400544e-01	ci right 2.570923e-01	k: 2485	n:10000
Cons ci ratio: 1.518144e-01	ci left: 5.773721e-02	ci right 6.731959e-02	k: 624	n:10000
KS ci ratio: 7.798399e-02	ci left: 1.937745e-01	ci right 2.095997e-01	k: 2016	n:10000
STK24   10000 perm   2 sec   (5720 perm/sec)   p_kst 2.016000e-01   p_cons 6.240000e-02   p_joint 2.485000e-01

Joint ci ratio: 8.124902e-02	ci left: 9.999854e-02	ci right 1.085169e-01	k: 2084	n:20000
Cons ci ratio: 1.156747e-01	ci left: 5.115076e-02	ci right 5.747960e-02	k: 1085	n:20000
KS ci ratio: 5.581171e-02	ci left: 1.922986e-01	ci right 2.033894e-01	k: 3956	n:20000
STK24   20000 perm   4 sec   (5002 perm/sec)   p_kst 1.978000e-01   p_cons 5.425000e-02   p_joint 1.042000e-01

Joint ci ratio: 5.727956e-02	ci left: 1.311519e-01	ci right 1.389189e-01	k: 4050	n:30000
Cons ci ratio: 9.345190e-02	ci left: 5.280528e-02	ci right 5.801457e-02	k: 1661	n:30000
KS ci ratio: 4.569266e-02	ci left: 1.924791e-01	ci right 2.015130e-01	k: 5909	n:30000
STK24   30000 perm   6 sec   (4774 perm/sec)   p_kst 1.969667e-01   p_cons 5.536667e-02   p_joint 1.350000e-01

Outputting figure to mutsig2_images.part000000000168/STK24.4_1422_30000_0.19697_0.055367_0.135.png
                gene_name: STK24
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 32 percent done.
STOML2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.263175e-02	ci left: 7.413911e-01	ci right 7.584631e-01	k: 7500	n:10000
KS ci ratio: 1.676522e-02	ci left: 8.381638e-01	ci right 8.524344e-01	k: 8454	n:10000
STOML2   10000 perm   2 sec   (6632 perm/sec)   p_kst 8.454000e-01   p_cons 7.500000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STOML2.4_1111_10000_0.8454_0.75_1.png
                gene_name: STOML2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
STRA6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.696950e-02	ci left: 6.694464e-01	ci right 6.878494e-01	k: 6787	n:10000
KS ci ratio: 1.738284e-02	ci left: 8.282899e-01	ci right 8.429141e-01	k: 8357	n:10000
STRA6   10000 perm   2 sec   (5272 perm/sec)   p_kst 8.357000e-01   p_cons 6.787000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STRA6.4_2126_10000_0.8357_0.6787_1.png
                gene_name: STRA6
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
STRN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.786866e-03	ci left: 9.828525e-01	ci right 9.876587e-01	k: 9854	n:10000
Cons ci ratio: 2.760228e-02	ci left: 6.591754e-01	ci right 6.777264e-01	k: 6685	n:10000
KS ci ratio: 1.563421e-02	ci left: 8.559009e-01	ci right 8.694871e-01	k: 8628	n:10000
STRN4   10000 perm   2 sec   (5204 perm/sec)   p_kst 8.628000e-01   p_cons 6.685000e-01   p_joint 9.854000e-01

Outputting figure to mutsig2_images.part000000000168/STRN4.4_2351_10000_0.8628_0.6685_0.9854.png
                gene_name: STRN4
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 37 percent done.
STARD8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.454018e-02	ci left: 8.725497e-01	ci right 8.854286e-01	k: 8791	n:10000
Cons ci ratio: 3.294486e-02	ci left: 5.762723e-01	ci right 5.956776e-01	k: 5860	n:10000
KS ci ratio: 4.045260e-02	ci left: 4.743609e-01	ci right 4.940483e-01	k: 4842	n:10000
STARD8   10000 perm   2 sec   (5075 perm/sec)   p_kst 4.842000e-01   p_cons 5.860000e-01   p_joint 8.791000e-01

Outputting figure to mutsig2_images.part000000000168/STARD8.3_3372_10000_0.4842_0.586_0.8791.png
                gene_name: STARD8
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 39 percent done.
STAT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.861618e-02	ci left: 3.843054e-01	ci right 4.035564e-01	k: 3939	n:10000
KS ci ratio: 3.067940e-02	ci left: 6.105032e-01	ci right 6.296268e-01	k: 6201	n:10000
STAT4   10000 perm   2 sec   (5550 perm/sec)   p_kst 6.201000e-01   p_cons 3.939000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STAT4.3_2339_10000_0.6201_0.3939_1.png
                gene_name: STAT4
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
STAT5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.004989e-02	ci left: 4.793568e-01	ci right 4.990495e-01	k: 4892	n:10000
Cons ci ratio: 4.128764e-02	ci left: 4.641722e-01	ci right 4.838429e-01	k: 4740	n:10000
KS ci ratio: 5.421677e-02	ci left: 3.338913e-01	ci right 3.526001e-01	k: 3432	n:10000
STAT5B   10000 perm   2 sec   (5581 perm/sec)   p_kst 3.432000e-01   p_cons 4.740000e-01   p_joint 4.892000e-01

Outputting figure to mutsig2_images.part000000000168/STAT5B.3_2436_10000_0.3432_0.474_0.4892.png
                gene_name: STAT5B
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 42 percent done.
STAU2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.319010e-02	ci left: 4.418115e-01	ci right 4.614167e-01	k: 4516	n:10000
Cons ci ratio: 8.729533e-02	ci left: 1.604251e-01	ci right 1.751689e-01	k: 1677	n:10000
KS ci ratio: 1.525594e-02	ci left: 8.617190e-01	ci right 8.750656e-01	k: 8685	n:10000
STAU2   10000 perm   2 sec   (5628 perm/sec)   p_kst 8.685000e-01   p_cons 1.677000e-01   p_joint 4.516000e-01

Outputting figure to mutsig2_images.part000000000168/STAU2.3_1907_10000_0.8685_0.1677_0.4516.png
                gene_name: STAU2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 44 percent done.
STEAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.708612e-01	ci left: 4.571402e-02	ci right 5.435051e-02	k: 499	n:10000
Cons ci ratio: 1.322110e-01	ci left: 7.543425e-02	ci right 8.621143e-02	k: 807	n:10000
KS ci ratio: 9.588261e-02	ci left: 1.362914e-01	ci right 1.501172e-01	k: 1431	n:10000
STEAP4   10000 perm   2 sec   (6110 perm/sec)   p_kst 1.431000e-01   p_cons 8.070000e-02   p_joint 4.990000e-02

Joint ci ratio: 1.431237e-01	ci left: 3.355738e-02	ci right 3.877859e-02	k: 722	n:20000
Cons ci ratio: 9.364690e-02	ci left: 7.676561e-02	ci right 8.435686e-02	k: 1610	n:20000
KS ci ratio: 6.621623e-02	ci left: 1.441405e-01	ci right 1.540617e-01	k: 2981	n:20000
STEAP4   20000 perm   4 sec   (5370 perm/sec)   p_kst 1.490500e-01   p_cons 8.050000e-02   p_joint 3.610000e-02

Joint ci ratio: 1.245418e-01	ci left: 2.997251e-02	ci right 3.398546e-02	k: 958	n:30000
Cons ci ratio: 7.643710e-02	ci left: 7.751090e-02	ci right 8.370394e-02	k: 2417	n:30000
KS ci ratio: 5.461925e-02	ci left: 1.425163e-01	ci right 1.505522e-01	k: 4395	n:30000
STEAP4   30000 perm   6 sec   (5076 perm/sec)   p_kst 1.465000e-01   p_cons 8.056667e-02   p_joint 3.193333e-02

Joint ci ratio: 1.040373e-01	ci left: 3.248908e-02	ci right 3.607895e-02	k: 1370	n:40000
Cons ci ratio: 6.650004e-02	ci left: 7.726096e-02	ci right 8.260021e-02	k: 3196	n:40000
KS ci ratio: 4.736967e-02	ci left: 1.427014e-01	ci right 1.496500e-01	k: 5846	n:40000
STEAP4   40000 perm   8 sec   (4891 perm/sec)   p_kst 1.461500e-01   p_cons 7.990000e-02   p_joint 3.425000e-02

Joint ci ratio: 8.956113e-02	ci left: 3.524498e-02	ci right 3.856907e-02	k: 1844	n:50000
Cons ci ratio: 5.944118e-02	ci left: 7.763648e-02	ci right 8.241241e-02	k: 4000	n:50000
KS ci ratio: 4.252822e-02	ci left: 1.421425e-01	ci right 1.483388e-01	k: 7261	n:50000
STEAP4   50000 perm   11 sec   (4761 perm/sec)   p_kst 1.452200e-01   p_cons 8.000000e-02   p_joint 3.688000e-02

Outputting figure to mutsig2_images.part000000000168/STEAP4.3_1396_50000_0.14522_0.08_0.03688.png
                gene_name: STEAP4
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.039 

Current progress: 45 percent done.
STIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.210328e-02	ci left: 5.888147e-01	ci right 6.081279e-01	k: 5985	n:10000
KS ci ratio: 5.048895e-02	ci left: 3.664936e-01	ci right 3.855787e-01	k: 3760	n:10000
STIP1   10000 perm   2 sec   (6030 perm/sec)   p_kst 3.760000e-01   p_cons 5.985000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STIP1.3_1688_10000_0.376_0.5985_1.png
                gene_name: STIP1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
STK16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.056613e-02	ci left: 4.729622e-01	ci right 4.926478e-01	k: 4828	n:10000
KS ci ratio: 3.806611e-02	ci left: 5.047513e-01	ci right 5.244402e-01	k: 5146	n:10000
STK16   10000 perm   2 sec   (6259 perm/sec)   p_kst 5.146000e-01   p_cons 4.828000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STK16.3_946_10000_0.5146_0.4828_1.png
                gene_name: STK16
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
STK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.649413e-03	ci left: 9.595321e-01	ci right 9.669949e-01	k: 9634	n:10000
Cons ci ratio: 5.906185e-02	ci left: 2.966780e-01	ci right 3.148353e-01	k: 3057	n:10000
KS ci ratio: 3.465822e-02	ci left: 5.514072e-01	ci right 5.709571e-01	k: 5612	n:10000
STK3   10000 perm   2 sec   (6001 perm/sec)   p_kst 5.612000e-01   p_cons 3.057000e-01   p_joint 9.634000e-01

Outputting figure to mutsig2_images.part000000000168/STK3.3_1520_10000_0.5612_0.3057_0.9634.png
                gene_name: STK3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 50 percent done.
STK38L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.756493e-02	ci left: 6.597794e-01	ci right 6.783220e-01	k: 6691	n:10000
KS ci ratio: 4.198116e-02	ci left: 4.558845e-01	ci right 4.755355e-01	k: 4657	n:10000
STK38L   10000 perm   2 sec   (6068 perm/sec)   p_kst 4.657000e-01   p_cons 6.691000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STK38L.3_1447_10000_0.4657_0.6691_1.png
                gene_name: STK38L
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
STK39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.490513e-02	ci left: 5.479000e-01	ci right 5.674664e-01	k: 5577	n:10000
Cons ci ratio: 4.752422e-02	ci left: 3.951583e-01	ci right 4.144971e-01	k: 4048	n:10000
KS ci ratio: 3.668779e-02	ci left: 5.231631e-01	ci right 5.428176e-01	k: 5330	n:10000
STK39   10000 perm   2 sec   (5677 perm/sec)   p_kst 5.330000e-01   p_cons 4.048000e-01   p_joint 5.577000e-01

Outputting figure to mutsig2_images.part000000000168/STK39.3_1710_10000_0.533_0.4048_0.5577.png
                gene_name: STK39
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 53 percent done.
STK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.872667e-02	ci left: 4.961503e-01	ci right 5.158462e-01	k: 5060	n:10000
Cons ci ratio: 2.392387e-02	ci left: 7.197687e-01	ci right 7.372980e-01	k: 7286	n:10000
KS ci ratio: 4.380558e-02	ci left: 4.348278e-01	ci right 4.544044e-01	k: 4446	n:10000
STK4   10000 perm   2 sec   (5556 perm/sec)   p_kst 4.446000e-01   p_cons 7.286000e-01   p_joint 5.060000e-01

Outputting figure to mutsig2_images.part000000000168/STK4.3_1508_10000_0.4446_0.7286_0.506.png
                gene_name: STK4
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 55 percent done.
STOML3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.116124e-01	ci left: 1.036391e-01	ci right 1.159892e-01	k: 1097	n:10000
Cons ci ratio: 1.254876e-01	ci left: 8.329513e-02	ci right 9.454569e-02	k: 888	n:10000
KS ci ratio: 5.890920e-02	ci left: 2.977686e-01	ci right 3.159440e-01	k: 3068	n:10000
STOML3   10000 perm   2 sec   (6358 perm/sec)   p_kst 3.068000e-01   p_cons 8.880000e-02   p_joint 1.097000e-01

Joint ci ratio: 5.503263e-02	ci left: 1.967512e-01	ci right 2.079355e-01	k: 4046	n:20000
Cons ci ratio: 8.827251e-02	ci left: 8.577461e-02	ci right 9.374513e-02	k: 1794	n:20000
KS ci ratio: 4.067247e-02	ci left: 3.106527e-01	ci right 3.236005e-01	k: 6342	n:20000
STOML3   20000 perm   4 sec   (5534 perm/sec)   p_kst 3.171000e-01   p_cons 8.970000e-02   p_joint 2.023000e-01

Outputting figure to mutsig2_images.part000000000168/STOML3.3_933_20000_0.3171_0.0897_0.2023.png
                gene_name: STOML3
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 56 percent done.
STRA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.771443e-02	ci left: 6.573633e-01	ci right 6.759395e-01	k: 6667	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
STRA8   10000 perm   2 sec   (6273 perm/sec)   p_kst 1   p_cons 6.667000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STRA8.3_1029_10000_1_0.6667_1.png
                gene_name: STRA8
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
STRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.013601e-01	ci left: 1.234670e-01	ci right 1.367493e-01	k: 1300	n:10000
Cons ci ratio: 8.994959e-02	ci left: 1.523737e-01	ci right 1.668252e-01	k: 1595	n:10000
KS ci ratio: 8.534673e-02	ci left: 1.667136e-01	ci right 1.816767e-01	k: 1741	n:10000
STRC   10000 perm   2 sec   (4245 perm/sec)   p_kst 1.741000e-01   p_cons 1.595000e-01   p_joint 1.300000e-01

Joint ci ratio: 8.122727e-02	ci left: 1.000476e-01	ci right 1.085678e-01	k: 2085	n:20000
Cons ci ratio: 6.397498e-02	ci left: 1.529700e-01	ci right 1.631296e-01	k: 3160	n:20000
KS ci ratio: 6.077303e-02	ci left: 1.669410e-01	ci right 1.774545e-01	k: 3443	n:20000
STRC   20000 perm   5 sec   (3801 perm/sec)   p_kst 1.721500e-01   p_cons 1.580000e-01   p_joint 1.042500e-01

Outputting figure to mutsig2_images.part000000000168/STRC.3_5444_20000_0.17215_0.158_0.10425.png
                gene_name: STRC
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 60 percent done.
STRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.367603e-02	ci left: 7.239092e-01	ci right 7.413551e-01	k: 7327	n:10000
Cons ci ratio: 1.037541e-02	ci left: 9.295765e-01	ci right 9.393685e-01	k: 9346	n:10000
KS ci ratio: 3.965928e-02	ci left: 4.842538e-01	ci right 5.039497e-01	k: 4941	n:10000
STRN   10000 perm   2 sec   (5493 perm/sec)   p_kst 4.941000e-01   p_cons 9.346000e-01   p_joint 7.327000e-01

Outputting figure to mutsig2_images.part000000000168/STRN.3_2415_10000_0.4941_0.9346_0.7327.png
                gene_name: STRN
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 61 percent done.
STT3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.501845e-02	ci left: 5.462969e-01	ci right 5.658704e-01	k: 5561	n:10000
KS ci ratio: 2.146053e-02	ci left: 7.610165e-01	ci right 7.776263e-01	k: 7694	n:10000
STT3A   10000 perm   2 sec   (5404 perm/sec)   p_kst 7.694000e-01   p_cons 5.561000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STT3A.3_2186_10000_0.7694_0.5561_1.png
                gene_name: STT3A
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
STAM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.841699e-02	ci left: 8.115144e-01	ci right 8.266992e-01	k: 8192	n:10000
KS ci ratio: 3.287024e-02	ci left: 5.773758e-01	ci right 5.967734e-01	k: 5871	n:10000
STAM   10000 perm   2 sec   (6343 perm/sec)   p_kst 5.871000e-01   p_cons 8.192000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STAM.2_1679_10000_0.5871_0.8192_1.png
                gene_name: STAM
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
STAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.408486e-02	ci left: 5.596260e-01	ci right 5.791336e-01	k: 5694	n:10000
KS ci ratio: 1.365061e-02	ci left: 8.856497e-01	ci right 8.979211e-01	k: 8919	n:10000
STAM2   10000 perm   2 sec   (6045 perm/sec)   p_kst 8.919000e-01   p_cons 5.694000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STAM2.2_1634_10000_0.8919_0.5694_1.png
                gene_name: STAM2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
STAMBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.816456e-02	ci left: 6.501168e-01	ci right 6.687903e-01	k: 6595	n:10000
Cons ci ratio: 3.551046e-02	ci left: 5.393846e-01	ci right 5.589867e-01	k: 5492	n:10000
KS ci ratio: 2.726672e-02	ci left: 6.646124e-01	ci right 6.830863e-01	k: 6739	n:10000
STAMBP   10000 perm   2 sec   (6271 perm/sec)   p_kst 6.739000e-01   p_cons 5.492000e-01   p_joint 6.595000e-01

Outputting figure to mutsig2_images.part000000000168/STAMBP.2_1311_10000_0.6739_0.5492_0.6595.png
                gene_name: STAMBP
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 68 percent done.
STAMBPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.811095e-02	ci left: 3.892832e-01	ci right 4.085757e-01	k: 3989	n:10000
KS ci ratio: 2.411141e-02	ci left: 7.166386e-01	ci right 7.342299e-01	k: 7255	n:10000
STAMBPL1   10000 perm   2 sec   (6339 perm/sec)   p_kst 7.255000e-01   p_cons 3.989000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STAMBPL1.2_1351_10000_0.7255_0.3989_1.png
                gene_name: STAMBPL1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
STARD3NL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.658135e-02	ci left: 2.487538e-01	ci right 2.659878e-01	k: 2573	n:10000
Cons ci ratio: 1.978425e-02	ci left: 7.889804e-01	ci right 8.048463e-01	k: 7970	n:10000
KS ci ratio: 1.019918e-01	ci left: 1.220977e-01	ci right 1.353194e-01	k: 1286	n:10000
STARD3NL   10000 perm   1 sec   (7067 perm/sec)   p_kst 1.286000e-01   p_cons 7.970000e-01   p_joint 2.573000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 1.384006e-02	ci left: 7.948426e-01	ci right 8.059700e-01	k: 16009	n:20000
KS ci ratio: 7.338550e-02	ci left: 1.202495e-01	ci right 1.294599e-01	k: 2496	n:20000
STARD3NL   20000 perm   3 sec   (6138 perm/sec)   p_kst 1.248000e-01   p_cons 8.004500e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STARD3NL.2_733_20000_0.1248_0.80045_1.png
                gene_name: STARD3NL
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
STARD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.034183e-02	ci left: 6.157275e-01	ci right 6.347995e-01	k: 6253	n:10000
Cons ci ratio: 2.268605e-02	ci left: 7.404812e-01	ci right 7.575735e-01	k: 7491	n:10000
KS ci ratio: 3.929614e-02	ci left: 4.888518e-01	ci right 5.085490e-01	k: 4987	n:10000
STARD6   10000 perm   1 sec   (7271 perm/sec)   p_kst 4.987000e-01   p_cons 7.491000e-01   p_joint 6.253000e-01

Outputting figure to mutsig2_images.part000000000168/STARD6.2_687_10000_0.4987_0.7491_0.6253.png
                gene_name: STARD6
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 73 percent done.
STAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.141213e-02	ci left: 1.804823e-01	ci right 1.958998e-01	k: 1881	n:10000
Cons ci ratio: 5.476226e-02	ci left: 3.294222e-01	ci right 3.480718e-01	k: 3387	n:10000
KS ci ratio: 1.721333e-01	ci left: 4.504270e-02	ci right 5.362227e-02	k: 492	n:10000
STAT3   10000 perm   2 sec   (5755 perm/sec)   p_kst 4.920000e-02   p_cons 3.387000e-01   p_joint 1.881000e-01

Joint ci ratio: 3.942895e-02	ci left: 3.241798e-01	ci right 3.372694e-01	k: 6614	n:20000
Cons ci ratio: 3.893108e-02	ci left: 3.298013e-01	ci right 3.429463e-01	k: 6727	n:20000
KS ci ratio: 1.201260e-01	ci left: 4.750575e-02	ci right 5.362575e-02	k: 1010	n:20000
STAT3   20000 perm   4 sec   (5028 perm/sec)   p_kst 5.050000e-02   p_cons 3.363500e-01   p_joint 3.307000e-01

Joint ci ratio: 3.108572e-02	ci left: 3.410141e-01	ci right 3.518157e-01	k: 10392	n:30000
Cons ci ratio: 3.176811e-02	ci left: 3.312853e-01	ci right 3.420130e-01	k: 10099	n:30000
KS ci ratio: 9.786246e-02	ci left: 4.827697e-02	ci right 5.327714e-02	k: 1522	n:30000
STAT3   30000 perm   6 sec   (4783 perm/sec)   p_kst 5.073333e-02   p_cons 3.366333e-01   p_joint 3.464000e-01

Outputting figure to mutsig2_images.part000000000168/STAT3.2_2405_30000_0.050733_0.33663_0.3464.png
                gene_name: STAT3
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 74 percent done.
STAT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.967861e-02	ci left: 6.260790e-01	ci right 6.450419e-01	k: 6356	n:10000
Cons ci ratio: 1.977202e-02	ci left: 7.891832e-01	ci right 8.050433e-01	k: 7972	n:10000
KS ci ratio: 5.121749e-02	ci left: 3.598301e-01	ci right 3.788461e-01	k: 3693	n:10000
STAT6   10000 perm   2 sec   (5485 perm/sec)   p_kst 3.693000e-01   p_cons 7.972000e-01   p_joint 6.356000e-01

Outputting figure to mutsig2_images.part000000000168/STAT6.2_2628_10000_0.3693_0.7972_0.6356.png
                gene_name: STAT6
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 76 percent done.
STBD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.026288e-01	ci left: 1.400230e-02	ci right 1.908497e-02	k: 164	n:10000
Cons ci ratio: 2.371212e-01	ci left: 2.344048e-02	ci right 2.983930e-02	k: 265	n:10000
KS ci ratio: 1.647107e-01	ci left: 4.917009e-02	ci right 5.809220e-02	k: 535	n:10000
STBD1   10000 perm   1 sec   (6717 perm/sec)   p_kst 5.350000e-02   p_cons 2.650000e-02   p_joint 1.640000e-02

Joint ci ratio: 1.802519e-01	ci left: 2.101484e-02	ci right 2.522538e-02	k: 461	n:20000
Cons ci ratio: 1.588432e-01	ci left: 2.719860e-02	ci right 3.193948e-02	k: 590	n:20000
KS ci ratio: 1.110461e-01	ci left: 5.538421e-02	ci right 6.194483e-02	k: 1172	n:20000
STBD1   20000 perm   3 sec   (5818 perm/sec)   p_kst 5.860000e-02   p_cons 2.950000e-02   p_joint 2.305000e-02

Joint ci ratio: 1.541510e-01	ci left: 1.947147e-02	ci right 2.275552e-02	k: 632	n:30000
Cons ci ratio: 1.301886e-01	ci left: 2.742065e-02	ci right 3.127122e-02	k: 879	n:30000
KS ci ratio: 8.981837e-02	ci left: 5.701237e-02	ci right 6.240662e-02	k: 1790	n:30000
STBD1   30000 perm   5 sec   (5511 perm/sec)   p_kst 5.966667e-02   p_cons 2.930000e-02   p_joint 2.106667e-02

Joint ci ratio: 1.858457e-01	ci left: 9.977125e-03	ci right 1.204478e-02	k: 439	n:40000
Cons ci ratio: 1.140215e-01	ci left: 2.706128e-02	ci right 3.035761e-02	k: 1147	n:40000
KS ci ratio: 7.693232e-02	ci left: 5.860039e-02	ci right 6.331360e-02	k: 2437	n:40000
STBD1   40000 perm   8 sec   (5309 perm/sec)   p_kst 6.092500e-02   p_cons 2.867500e-02   p_joint 1.097500e-02

Joint ci ratio: 1.427370e-01	ci left: 1.379841e-02	ci right 1.593845e-02	k: 742	n:50000
Cons ci ratio: 1.055596e-01	ci left: 2.542144e-02	ci right 2.827385e-02	k: 1341	n:50000
KS ci ratio: 6.915552e-02	ci left: 5.828811e-02	ci right 6.248311e-02	k: 3018	n:50000
STBD1   50000 perm   10 sec   (5154 perm/sec)   p_kst 6.036000e-02   p_cons 2.682000e-02   p_joint 1.484000e-02

Joint ci ratio: 1.329438e-01	ci left: 1.333300e-02	ci right 1.524774e-02	k: 856	n:60000
Cons ci ratio: 9.616017e-02	ci left: 2.565257e-02	ci right 2.826013e-02	k: 1616	n:60000
KS ci ratio: 6.300808e-02	ci left: 5.868741e-02	ci right 6.252189e-02	k: 3635	n:60000
STBD1   60000 perm   12 sec   (5017 perm/sec)   p_kst 6.058333e-02   p_cons 2.693333e-02   p_joint 1.426667e-02

Joint ci ratio: 1.154596e-01	ci left: 1.526386e-02	ci right 1.714798e-02	k: 1133	n:70000
Cons ci ratio: 8.882169e-02	ci left: 2.586769e-02	ci right 2.828601e-02	k: 1894	n:70000
KS ci ratio: 5.829764e-02	ci left: 5.889995e-02	ci right 6.245086e-02	k: 4246	n:70000
STBD1   70000 perm   14 sec   (4855 perm/sec)   p_kst 6.065714e-02   p_cons 2.705714e-02   p_joint 1.618571e-02

Joint ci ratio: 1.297830e-01	ci left: 1.054277e-02	ci right 1.201799e-02	k: 901	n:80000
Cons ci ratio: 8.359664e-02	ci left: 2.563060e-02	ci right 2.787890e-02	k: 2139	n:80000
KS ci ratio: 5.455472e-02	ci left: 5.896870e-02	ci right 6.228826e-02	k: 4849	n:80000
STBD1   80000 perm   17 sec   (4732 perm/sec)   p_kst 6.061250e-02   p_cons 2.673750e-02   p_joint 1.126250e-02

Joint ci ratio: 1.022186e-01	ci left: 1.525530e-02	ci right 1.690943e-02	k: 1446	n:90000
Cons ci ratio: 7.850634e-02	ci left: 2.589629e-02	ci right 2.802323e-02	k: 2425	n:90000
KS ci ratio: 5.139587e-02	ci left: 5.914863e-02	ci right 6.227976e-02	k: 5463	n:90000
STBD1   90000 perm   19 sec   (4621 perm/sec)   p_kst 6.070000e-02   p_cons 2.694444e-02   p_joint 1.606667e-02

Joint ci ratio: 9.742919e-02	ci left: 1.515329e-02	ci right 1.671497e-02	k: 1592	n:100000
Cons ci ratio: 7.465657e-02	ci left: 2.582742e-02	ci right 2.784015e-02	k: 2682	n:100000
KS ci ratio: 4.866084e-02	ci left: 5.945519e-02	ci right 6.243034e-02	k: 6093	n:100000
STBD1   100000 perm   22 sec   (4535 perm/sec)   p_kst 6.093000e-02   p_cons 2.682000e-02   p_joint 1.592000e-02

Outputting figure to mutsig2_images.part000000000168/STBD1.2_1085_100000_0.06093_0.02682_0.01592.png
                gene_name: STBD1
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.017 

Current progress: 77 percent done.
STC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.019312e-02	ci left: 6.180386e-01	ci right 6.370870e-01	k: 6276	n:10000
Cons ci ratio: 5.632616e-02	ci left: 3.170130e-01	ci right 3.354883e-01	k: 3262	n:10000
KS ci ratio: 2.790168e-02	ci left: 6.543436e-01	ci right 6.729609e-01	k: 6637	n:10000
STC1   10000 perm   1 sec   (7216 perm/sec)   p_kst 6.637000e-01   p_cons 3.262000e-01   p_joint 6.276000e-01

Outputting figure to mutsig2_images.part000000000168/STC1.2_760_10000_0.6637_0.3262_0.6276.png
                gene_name: STC1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 79 percent done.
STC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.578935e-02	ci left: 6.887938e-01	ci right 7.068908e-01	k: 6979	n:10000
Cons ci ratio: 2.777056e-02	ci left: 6.564574e-01	ci right 6.750460e-01	k: 6658	n:10000
KS ci ratio: 4.686983e-02	ci left: 4.018319e-01	ci right 4.212197e-01	k: 4115	n:10000
STC2   10000 perm   1 sec   (7074 perm/sec)   p_kst 4.115000e-01   p_cons 6.658000e-01   p_joint 6.979000e-01

Outputting figure to mutsig2_images.part000000000168/STC2.2_925_10000_0.4115_0.6658_0.6979.png
                gene_name: STC2
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 81 percent done.
STEAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.446164e-02	ci left: 5.542133e-01	ci right 5.737494e-01	k: 5640	n:10000
Cons ci ratio: 7.331842e-02	ci left: 2.140838e-01	ci right 2.304783e-01	k: 2222	n:10000
KS ci ratio: 2.563048e-02	ci left: 6.914151e-01	ci right 7.094680e-01	k: 7005	n:10000
STEAP1   10000 perm   1 sec   (6846 perm/sec)   p_kst 7.005000e-01   p_cons 2.222000e-01   p_joint 5.640000e-01

Outputting figure to mutsig2_images.part000000000168/STEAP1.2_1036_10000_0.7005_0.2222_0.564.png
                gene_name: STEAP1
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 82 percent done.
STEAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.405707e-02	ci left: 5.600270e-01	ci right 5.795323e-01	k: 5698	n:10000
KS ci ratio: 1.901106e-02	ci left: 8.017651e-01	ci right 8.172541e-01	k: 8096	n:10000
STEAP2   10000 perm   2 sec   (5832 perm/sec)   p_kst 8.096000e-01   p_cons 5.698000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STEAP2.2_1525_10000_0.8096_0.5698_1.png
                gene_name: STEAP2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
STK19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.386189e-02	ci left: 8.825771e-01	ci right 8.949954e-01	k: 8889	n:10000
Cons ci ratio: 6.913041e-02	ci left: 2.348172e-01	ci right 2.517326e-01	k: 2432	n:10000
KS ci ratio: 6.760723e-03	ci left: 9.677317e-01	ci right 9.743901e-01	k: 9712	n:10000
STK19   10000 perm   2 sec   (6339 perm/sec)   p_kst 9.712000e-01   p_cons 2.432000e-01   p_joint 8.889000e-01

Outputting figure to mutsig2_images.part000000000168/STK19.2_1190_10000_0.9712_0.2432_0.8889.png
                gene_name: STK19
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 85 percent done.
STK33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.874988e-02	ci left: 6.407601e-01	ci right 6.595523e-01	k: 6502	n:10000
Cons ci ratio: 3.189665e-02	ci left: 5.919262e-01	ci right 6.112146e-01	k: 6016	n:10000
KS ci ratio: 3.886633e-02	ci left: 4.943505e-01	ci right 5.140471e-01	k: 5042	n:10000
STK33   10000 perm   2 sec   (6102 perm/sec)   p_kst 5.042000e-01   p_cons 6.016000e-01   p_joint 6.502000e-01

Outputting figure to mutsig2_images.part000000000168/STK33.2_1593_10000_0.5042_0.6016_0.6502.png
                gene_name: STK33
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 87 percent done.
STK38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.439163e-02	ci left: 5.552156e-01	ci right 5.747465e-01	k: 5650	n:10000
KS ci ratio: 1.301240e-02	ci left: 8.947738e-01	ci right 9.065916e-01	k: 9008	n:10000
STK38   10000 perm   2 sec   (6258 perm/sec)   p_kst 9.008000e-01   p_cons 5.650000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STK38.2_1450_10000_0.9008_0.565_1.png
                gene_name: STK38
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
STMN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.887637e-02	ci left: 6.387484e-01	ci right 6.575652e-01	k: 6482	n:10000
Cons ci ratio: 6.663364e-02	ci left: 2.484571e-01	ci right 2.656846e-01	k: 2570	n:10000
KS ci ratio: 2.210680e-02	ci left: 7.501892e-01	ci right 7.670598e-01	k: 7587	n:10000
STMN1   10000 perm   1 sec   (6812 perm/sec)   p_kst 7.587000e-01   p_cons 2.570000e-01   p_joint 6.482000e-01

Outputting figure to mutsig2_images.part000000000168/STMN1.2_617_10000_0.7587_0.257_0.6482.png
                gene_name: STMN1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 90 percent done.
STMN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.587043e-02	ci left: 5.343769e-01	ci right 5.539974e-01	k: 5442	n:10000
KS ci ratio: 4.162861e-02	ci left: 4.600779e-01	ci right 4.797396e-01	k: 4699	n:10000
STMN4   10000 perm   1 sec   (6703 perm/sec)   p_kst 4.699000e-01   p_cons 5.442000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STMN4.2_675_10000_0.4699_0.5442_1.png
                gene_name: STMN4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
STOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.417707e-02	ci left: 2.101378e-01	ci right 2.264266e-01	k: 2182	n:10000
Cons ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
KS ci ratio: 2.122464e-02	ci left: 7.649647e-01	ci right 7.814758e-01	k: 7733	n:10000
STOX2   10000 perm   2 sec   (5571 perm/sec)   p_kst 7.733000e-01   p_cons 4.150000e-02   p_joint 2.182000e-01

Joint ci ratio: 6.261571e-02	ci left: 1.586950e-01	ci right 1.690029e-01	k: 3276	n:20000
Cons ci ratio: 1.314830e-01	ci left: 3.974595e-02	ci right 4.538802e-02	k: 850	n:20000
KS ci ratio: 1.519625e-02	ci left: 7.629941e-01	ci right 7.747277e-01	k: 15378	n:20000
STOX2   20000 perm   4 sec   (4975 perm/sec)   p_kst 7.689000e-01   p_cons 4.250000e-02   p_joint 1.638000e-01

Joint ci ratio: 4.223331e-02	ci left: 2.183662e-01	ci right 2.278209e-01	k: 6692	n:30000
Cons ci ratio: 1.090858e-01	ci left: 3.901127e-02	ci right 4.354478e-02	k: 1237	n:30000
KS ci ratio: 1.240885e-02	ci left: 7.640538e-01	ci right 7.736274e-01	k: 23066	n:30000
STOX2   30000 perm   6 sec   (4760 perm/sec)   p_kst 7.688667e-01   p_cons 4.123333e-02   p_joint 2.230667e-01

Joint ci ratio: 3.507542e-02	ci left: 2.337587e-01	ci right 2.421293e-01	k: 9517	n:40000
Cons ci ratio: 9.521588e-02	ci left: 3.871123e-02	ci right 4.260581e-02	k: 1625	n:40000
KS ci ratio: 1.075670e-02	ci left: 7.643598e-01	ci right 7.726512e-01	k: 30741	n:40000
STOX2   40000 perm   9 sec   (4612 perm/sec)   p_kst 7.685250e-01   p_cons 4.062500e-02   p_joint 2.379250e-01

Outputting figure to mutsig2_images.part000000000168/STOX2.2_2797_40000_0.76853_0.040625_0.23792.png
                gene_name: STOX2
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 94 percent done.
STRADA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.114056e-03	ci left: 9.869754e-01	ci right 9.911324e-01	k: 9892	n:10000
Cons ci ratio: 2.642698e-02	ci left: 6.783117e-01	ci right 6.965790e-01	k: 6875	n:10000
KS ci ratio: 2.337403e-02	ci left: 7.289600e-01	ci right 7.463014e-01	k: 7377	n:10000
STRADA   10000 perm   2 sec   (6524 perm/sec)   p_kst 7.377000e-01   p_cons 6.875000e-01   p_joint 9.892000e-01

Outputting figure to mutsig2_images.part000000000168/STRADA.2_1402_10000_0.7377_0.6875_0.9892.png
                gene_name: STRADA
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 95 percent done.
STRADB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.141216e-02	ci left: 7.618263e-01	ci right 7.784160e-01	k: 7702	n:10000
KS ci ratio: 1.474450e-02	ci left: 8.694829e-01	ci right 8.824972e-01	k: 8761	n:10000
STRADB   10000 perm   1 sec   (6788 perm/sec)   p_kst 8.761000e-01   p_cons 7.702000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STRADB.2_1301_10000_0.8761_0.7702_1.png
                gene_name: STRADB
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
STRAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.013191e-03	ci left: 9.813449e-01	ci right 9.863675e-01	k: 9840	n:10000
Cons ci ratio: 3.544597e-02	ci left: 5.402861e-01	ci right 5.598847e-01	k: 5501	n:10000
KS ci ratio: 6.630385e-02	ci left: 2.503360e-01	ci right 2.676047e-01	k: 2589	n:10000
STRAP   10000 perm   2 sec   (6286 perm/sec)   p_kst 2.589000e-01   p_cons 5.501000e-01   p_joint 9.840000e-01

Outputting figure to mutsig2_images.part000000000168/STRAP.2_1093_10000_0.2589_0.5501_0.984.png
                gene_name: STRAP
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 98 percent done.
STRN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.143829e-02	ci left: 9.161579e-01	ci right 9.267950e-01	k: 9216	n:10000
KS ci ratio: 3.587043e-02	ci left: 5.343769e-01	ci right 5.539974e-01	k: 5442	n:10000
STRN3   10000 perm   2 sec   (5504 perm/sec)   p_kst 5.442000e-01   p_cons 9.216000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000168/STRN3.2_2466_10000_0.5442_0.9216_1.png
                gene_name: STRN3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000168
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 168 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1644>
Subject: Job 9894163: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1644>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000169> was used as the working directory.
Started at Sat Oct  6 00:31:16 2012
Results reported at Sat Oct  6 00:50:35 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000169.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000169.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 169  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000169.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1199.62 sec.
    Max Memory :      3535 MB
    Max Swap   :      5900 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
169
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 169
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 169: processing genes 15146 - 15235
Calculating significance of each gene.
Using projection method.
15146	STX10	1
15147	STX11	7.263171e-01
15148	STX12	2.147217e-01
15149	STX16	1.238441e-01
15150	STX17	7.279369e-01
15151	STX18	7.930724e-01
15152	STX19	2.627660e-01
15153	STX1A	6.865564e-01
15154	STX1B	1.169204e-01
15155	STX2	1.376038e-01
15156	STX3	3.192472e-01
15157	STX4	4.319691e-01
15158	STX5	2.143316e-01
15159	STX6	3.872011e-01
15160	STX7	1.396275e-01
15161	STX8	2.188133e-01
15162	STXBP1	5.114801e-02
15163	STXBP2	8.722733e-01
15164	STXBP3	8.413096e-01
15165	STXBP4	1.891587e-02
15166	STXBP5	9.787021e-01
15167	STXBP5L	5.793852e-01
15168	STXBP6	1.080162e-01
15169	STYK1	7.896606e-01
15170	STYX	3.453882e-01
15171	STYXL1	3.235413e-01
15172	SUB1	3.532353e-01
15173	SUCLA2	2.901310e-02
15174	SUCLG1	4.644030e-01
15175	SUCLG2	1
15176	SUCNR1	2.960904e-01
15177	SUDS3	1
15178	SUFU	1.971059e-01
15179	SUGT1	5.139339e-01
15180	SULF1	2.496755e-01
15181	SULF2	1.780685e-01
15182	SULT1A1	3.385619e-01
15183	SULT1A2	6.673214e-01
15184	SULT1B1	2.196369e-01
15185	SULT1C2	3.697269e-01
15186	SULT1C3	6.866324e-01
15187	SULT1C4	4.751669e-02
15188	SULT1E1	4.444166e-01
15189	SULT2A1	4.922959e-01
15190	SULT2B1	8.559761e-01
15191	SULT4A1	5.939681e-01
15192	SULT6B1	2.620282e-01
15193	SUMF1	3.652538e-01
15194	SUMF2	8.160428e-01
15195	SUMO1	1
15196	SUMO2	1
15197	SUMO3	2.903024e-01
15198	SUMO4	1
15199	SUN1	9.861717e-01
15200	SUN2	8.494523e-01
15201	SUN3	9.259915e-02
15202	SUN5	1
15203	SUOX	4.468346e-01
In gene SUPT16H the following bins exceed PROBCAP:
    COAD-AA-3852	categ 6	N = 3248    n = 1	mu =   3.62e-07
15204	SUPT16H	2.380016e-01
15205	SUPT3H	2.462493e-01
15206	SUPT4H1	1.206604e-01
15207	SUPT5H	1.811289e-01
15208	SUPT6H	1.550958e-01
15209	SUPT7L	4.689659e-01
15210	SUPV3L1	5.904408e-01
15211	SURF1	1
15212	SURF2	1
15213	SURF4	7.155770e-01
15214	SURF6	1.548766e-01
15215	SUSD1	4.341960e-01
15216	SUSD2	9.935814e-01
15217	SUSD3	3.701803e-01
15218	SUSD4	2.209889e-01
15219	SUSD5	3.127656e-01
15220	SUV39H1	8.644480e-01
15221	SUV39H2	1.233189e-01
15222	SUV420H1	4.402638e-01
15223	SUV420H2	1
15224	SUZ12	2.335601e-01
15225	SV2A	3.236309e-01
15226	SV2B	2.834088e-01
15227	SV2C	5.038247e-01
15228	SVEP1	7.558535e-01
15229	SVIL	9.140550e-01
15230	SVIP	3.764870e-01
15231	SVOP	1
15232	SVOPL	2.473725e-01
15233	SWAP70	6.020279e-01
15234	SYAP1	1
15235	SYBU	8.406731e-01
Done

Running MutSig 2:
Scatter job 169: processing genes 15146 - 15235
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SVEP1
Processing conservation and coverage...
91% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.187888e-01	ci left: 2.769020e-02	ci right 3.458650e-02	k: 310	n:10000
Cons ci ratio: 1.156431e-02	ci left: 9.145095e-01	ci right 9.252444e-01	k: 9200	n:10000
KS ci ratio: 4.702584e-01	ci left: 5.284222e-03	ci right 8.612765e-03	k: 68	n:10000
SVEP1   10000 perm   3 sec   (3210 perm/sec)   p_kst 6.800000e-03   p_cons 9.200000e-01   p_joint 3.100000e-02

Joint ci ratio: 1.541997e-01	ci left: 2.888197e-02	ci right 3.375555e-02	k: 625	n:20000
Cons ci ratio: 8.819330e-03	ci left: 9.040118e-01	ci right 9.120691e-01	k: 18162	n:20000
KS ci ratio: 2.941709e-01	ci left: 7.506100e-03	ci right 1.013969e-02	k: 175	n:20000
SVEP1   20000 perm   9 sec   (2170 perm/sec)   p_kst 8.750000e-03   p_cons 9.081000e-01   p_joint 3.125000e-02

Joint ci ratio: 1.216872e-01	ci left: 3.139540e-02	ci right 3.549560e-02	k: 1002	n:30000
Cons ci ratio: 6.641490e-03	ci left: 9.176187e-01	ci right 9.237662e-01	k: 27622	n:30000
KS ci ratio: 2.444304e-01	ci left: 7.461014e-03	ci right 9.569162e-03	k: 254	n:30000
SVEP1   30000 perm   13 sec   (2366 perm/sec)   p_kst 8.466667e-03   p_cons 9.207333e-01   p_joint 3.340000e-02

Joint ci ratio: 1.005574e-01	ci left: 3.475662e-02	ci right 3.846104e-02	k: 1463	n:40000
Cons ci ratio: 5.691537e-03	ci left: 9.195826e-01	ci right 9.248560e-01	k: 36890	n:40000
KS ci ratio: 2.113705e-01	ci left: 7.623672e-03	ci right 9.448754e-03	k: 340	n:40000
SVEP1   40000 perm   16 sec   (2468 perm/sec)   p_kst 8.500000e-03   p_cons 9.222500e-01   p_joint 3.657500e-02

Joint ci ratio: 1.314307e-01	ci left: 1.633003e-02	ci right 1.864648e-02	k: 873	n:50000
Cons ci ratio: 5.430368e-03	ci left: 9.099487e-01	ci right 9.149233e-01	k: 45623	n:50000
KS ci ratio: 1.897871e-01	ci left: 7.656790e-03	ci right 9.281053e-03	k: 422	n:50000
SVEP1   50000 perm   20 sec   (2524 perm/sec)   p_kst 8.440000e-03   p_cons 9.124600e-01   p_joint 1.746000e-02

Joint ci ratio: 1.038403e-01	ci left: 2.199399e-02	ci right 2.441910e-02	k: 1391	n:60000
Cons ci ratio: 4.609591e-03	ci left: 9.212431e-01	ci right 9.255159e-01	k: 55404	n:60000
KS ci ratio: 1.733548e-01	ci left: 7.717154e-03	ci right 9.197648e-03	k: 506	n:60000
SVEP1   60000 perm   23 sec   (2555 perm/sec)   p_kst 8.433333e-03   p_cons 9.234000e-01   p_joint 2.318333e-02

Joint ci ratio: 9.274421e-02	ci left: 2.373035e-02	ci right 2.605212e-02	k: 1741	n:70000
Cons ci ratio: 4.252507e-03	ci left: 9.219110e-01	ci right 9.258538e-01	k: 64673	n:70000
KS ci ratio: 1.612533e-01	ci left: 7.696060e-03	ci right 9.059449e-03	k: 585	n:70000
SVEP1   70000 perm   27 sec   (2568 perm/sec)   p_kst 8.357143e-03   p_cons 9.239000e-01   p_joint 2.487143e-02

Joint ci ratio: 9.174120e-02	ci left: 2.128791e-02	ci right 2.334694e-02	k: 1784	n:80000
Cons ci ratio: 4.226056e-03	ci left: 9.129830e-01	ci right 9.168618e-01	k: 73195	n:80000
KS ci ratio: 1.483692e-01	ci left: 8.007889e-03	ci right 9.303121e-03	k: 691	n:80000
SVEP1   80000 perm   31 sec   (2568 perm/sec)   p_kst 8.637500e-03   p_cons 9.149375e-01   p_joint 2.230000e-02

Joint ci ratio: 8.556480e-02	ci left: 2.181291e-02	ci right 2.377357e-02	k: 2050	n:90000
Cons ci ratio: 3.975627e-03	ci left: 9.134395e-01	ci right 9.170892e-01	k: 82375	n:90000
KS ci ratio: 1.402022e-01	ci left: 8.007070e-03	ci right 9.224920e-03	k: 774	n:90000
SVEP1   90000 perm   35 sec   (2565 perm/sec)   p_kst 8.600000e-03   p_cons 9.152778e-01   p_joint 2.277778e-02

Joint ci ratio: 8.080980e-02	ci left: 2.206016e-02	ci right 2.392765e-02	k: 2298	n:100000
Cons ci ratio: 3.765945e-03	ci left: 9.137691e-01	ci right 9.172267e-01	k: 91551	n:100000
KS ci ratio: 1.338022e-01	ci left: 7.940303e-03	ci right 9.088478e-03	k: 850	n:100000
SVEP1   100000 perm   39 sec   (2558 perm/sec)   p_kst 8.500000e-03   p_cons 9.155100e-01   p_joint 2.298000e-02

Joint ci ratio: 8.134912e-02	ci left: 1.983108e-02	ci right 2.152159e-02	k: 2273	n:110000
Cons ci ratio: 3.700780e-03	ci left: 9.090177e-01	ci right 9.123970e-01	k: 100179	n:110000
KS ci ratio: 1.261626e-01	ci left: 8.150832e-03	ci right 9.257123e-03	k: 956	n:110000
SVEP1   110000 perm   43 sec   (2547 perm/sec)   p_kst 8.690909e-03   p_cons 9.107182e-01   p_joint 2.066364e-02

Joint ci ratio: 7.431953e-02	ci left: 2.181557e-02	ci right 2.350761e-02	k: 2718	n:120000
Cons ci ratio: 3.536892e-03	ci left: 9.093832e-01	ci right 9.126135e-01	k: 109321	n:120000
KS ci ratio: 1.206169e-01	ci left: 8.198465e-03	ci right 9.258815e-03	k: 1046	n:120000
SVEP1   120000 perm   48 sec   (2501 perm/sec)   p_kst 8.716667e-03   p_cons 9.110083e-01   p_joint 2.265000e-02

Joint ci ratio: 6.519927e-02	ci left: 2.617106e-02	ci right 2.794243e-02	k: 3516	n:130000
Cons ci ratio: 3.404908e-03	ci left: 9.091213e-01	ci right 9.122296e-01	k: 118389	n:130000
KS ci ratio: 1.149808e-01	ci left: 8.351752e-03	ci right 9.378028e-03	k: 1151	n:130000
SVEP1   130000 perm   52 sec   (2483 perm/sec)   p_kst 8.853846e-03   p_cons 9.106846e-01   p_joint 2.704615e-02

Joint ci ratio: 6.697331e-02	ci left: 2.308515e-02	ci right 2.469180e-02	k: 3343	n:140000
Cons ci ratio: 3.283759e-03	ci left: 9.090430e-01	ci right 9.120400e-01	k: 127477	n:140000
KS ci ratio: 1.115085e-01	ci left: 8.261836e-03	ci right 9.244387e-03	k: 1224	n:140000
SVEP1   140000 perm   57 sec   (2470 perm/sec)   p_kst 8.742857e-03   p_cons 9.105500e-01   p_joint 2.387857e-02

Joint ci ratio: 5.871965e-02	ci left: 2.800543e-02	ci right 2.970618e-02	k: 4327	n:150000
Cons ci ratio: 3.167537e-03	ci left: 9.093463e-01	ci right 9.122378e-01	k: 136620	n:150000
KS ci ratio: 1.073773e-01	ci left: 8.333547e-03	ci right 9.285586e-03	k: 1320	n:150000
SVEP1   150000 perm   61 sec   (2454 perm/sec)   p_kst 8.800000e-03   p_cons 9.108000e-01   p_joint 2.884667e-02

Joint ci ratio: 5.820983e-02	ci left: 2.675959e-02	ci right 2.837009e-02	k: 4409	n:160000
Cons ci ratio: 3.059512e-03	ci left: 9.097893e-01	ci right 9.125833e-01	k: 145791	n:160000
KS ci ratio: 1.036367e-01	ci left: 8.402969e-03	ci right 9.327460e-03	k: 1417	n:160000
SVEP1   160000 perm   66 sec   (2439 perm/sec)   p_kst 8.856250e-03   p_cons 9.111938e-01   p_joint 2.755625e-02

Joint ci ratio: 5.974217e-02	ci left: 2.396157e-02	ci right 2.544293e-02	k: 4198	n:170000
Cons ci ratio: 2.966210e-03	ci left: 9.099385e-01	ci right 9.126474e-01	k: 154921	n:170000
KS ci ratio: 1.003954e-01	ci left: 8.441787e-03	ci right 9.339788e-03	k: 1510	n:170000
SVEP1   170000 perm   70 sec   (2420 perm/sec)   p_kst 8.882353e-03   p_cons 9.113000e-01   p_joint 2.469412e-02

Joint ci ratio: 6.057164e-02	ci left: 2.204968e-02	ci right 2.343242e-02	k: 4092	n:180000
Cons ci ratio: 2.880058e-03	ci left: 9.101226e-01	ci right 9.127530e-01	k: 164060	n:180000
KS ci ratio: 9.765562e-02	ci left: 8.438743e-03	ci right 9.310518e-03	k: 1596	n:180000
SVEP1   180000 perm   75 sec   (2399 perm/sec)   p_kst 8.866667e-03   p_cons 9.114444e-01   p_joint 2.273333e-02

Outputting figure to mutsig2_images.part000000000169/SVEP1.18_10908_180000_0.0088667_0.91144_0.022733.png
                gene_name: SVEP1
               theta_stop: 0.098 
                    nperm: 180000 
                     p_ks: 0.0089 
        ci_ks_bounds_left: 0.0084 
       ci_ks_bounds_right: 0.0093 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.023 

Current progress: 2 percent done.
SUPT6H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.283441e-02	ci left: 4.459028e-01	ci right 4.655230e-01	k: 4557	n:10000
Cons ci ratio: 2.241456e-02	ci left: 7.450311e-01	ci right 7.620210e-01	k: 7536	n:10000
KS ci ratio: 5.671270e-02	ci left: 3.140359e-01	ci right 3.324672e-01	k: 3232	n:10000
SUPT6H   10000 perm   3 sec   (3902 perm/sec)   p_kst 3.232000e-01   p_cons 7.536000e-01   p_joint 4.557000e-01

Outputting figure to mutsig2_images.part000000000169/SUPT6H.13_5325_10000_0.3232_0.7536_0.4557.png
                gene_name: SUPT6H
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 3 percent done.
SVIL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.807683e-02	ci left: 6.515256e-01	ci right 6.701806e-01	k: 6609	n:10000
Cons ci ratio: 3.195656e-02	ci left: 5.910228e-01	ci right 6.103185e-01	k: 6007	n:10000
KS ci ratio: 3.414745e-02	ci left: 5.587238e-01	ci right 5.782363e-01	k: 5685	n:10000
SVIL   10000 perm   2 sec   (4006 perm/sec)   p_kst 5.685000e-01   p_cons 6.007000e-01   p_joint 6.609000e-01

Outputting figure to mutsig2_images.part000000000169/SVIL.13_6785_10000_0.5685_0.6007_0.6609.png
                gene_name: SVIL
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 5 percent done.
SUPT5H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.331963e-02	ci left: 5.707557e-01	ci right 5.901974e-01	k: 5805	n:10000
Cons ci ratio: 2.780800e-02	ci left: 6.558534e-01	ci right 6.744503e-01	k: 6652	n:10000
KS ci ratio: 4.472179e-02	ci left: 4.246552e-01	ci right 4.441830e-01	k: 4344	n:10000
SUPT5H   10000 perm   2 sec   (4861 perm/sec)   p_kst 4.344000e-01   p_cons 6.652000e-01   p_joint 5.805000e-01

Outputting figure to mutsig2_images.part000000000169/SUPT5H.11_3380_10000_0.4344_0.6652_0.5805.png
                gene_name: SUPT5H
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 7 percent done.
STXBP5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.713038e-02	ci left: 6.668278e-01	ci right 6.852695e-01	k: 6761	n:10000
Cons ci ratio: 3.145274e-02	ci left: 5.986524e-01	ci right 6.178845e-01	k: 6083	n:10000
KS ci ratio: 5.085669e-02	ci left: 3.631119e-01	ci right 3.821624e-01	k: 3726	n:10000
STXBP5L   10000 perm   2 sec   (4736 perm/sec)   p_kst 3.726000e-01   p_cons 6.083000e-01   p_joint 6.761000e-01

Outputting figure to mutsig2_images.part000000000169/STXBP5L.9_3669_10000_0.3726_0.6083_0.6761.png
                gene_name: STXBP5L
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 8 percent done.
SULF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.218348e-02	ci left: 5.876103e-01	ci right 6.069330e-01	k: 5973	n:10000
Cons ci ratio: 5.889535e-02	ci left: 2.978678e-01	ci right 3.160448e-01	k: 3069	n:10000
KS ci ratio: 4.265357e-02	ci left: 4.479986e-01	ci right 4.676260e-01	k: 4578	n:10000
SULF1   10000 perm   2 sec   (4968 perm/sec)   p_kst 4.578000e-01   p_cons 3.069000e-01   p_joint 5.973000e-01

Outputting figure to mutsig2_images.part000000000169/SULF1.8_2692_10000_0.4578_0.3069_0.5973.png
                gene_name: SULF1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 10 percent done.
SUV420H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.617783e-02	ci left: 8.474359e-01	ci right 8.613569e-01	k: 8545	n:10000
Cons ci ratio: 2.515500e-02	ci left: 6.992813e-01	ci right 7.171972e-01	k: 7083	n:10000
KS ci ratio: 2.767080e-02	ci left: 6.580680e-01	ci right 6.766344e-01	k: 6674	n:10000
SUV420H1   10000 perm   2 sec   (5017 perm/sec)   p_kst 6.674000e-01   p_cons 7.083000e-01   p_joint 8.545000e-01

Outputting figure to mutsig2_images.part000000000169/SUV420H1.8_2706_10000_0.6674_0.7083_0.8545.png
                gene_name: SUV420H1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 11 percent done.
SUPT16H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.573861e-02	ci left: 2.535997e-01	ci right 2.709390e-01	k: 2622	n:10000
Cons ci ratio: 1.837970e-02	ci left: 8.121240e-01	ci right 8.272893e-01	k: 8198	n:10000
KS ci ratio: 9.557126e-02	ci left: 1.370752e-01	ci right 1.509329e-01	k: 1439	n:10000
SUPT16H   10000 perm   2 sec   (5093 perm/sec)   p_kst 1.439000e-01   p_cons 8.198000e-01   p_joint 2.622000e-01

Outputting figure to mutsig2_images.part000000000169/SUPT16H.7_3248_10000_0.1439_0.8198_0.2622.png
                gene_name: SUPT16H
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 13 percent done.
STXBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.774183e-02	ci left: 3.929674e-01	ci right 4.122893e-01	k: 4026	n:10000
Cons ci ratio: 9.792711e-02	ci left: 1.312962e-01	ci right 1.449153e-01	k: 1380	n:10000
KS ci ratio: 2.396621e-02	ci left: 7.190618e-01	ci right 7.366053e-01	k: 7279	n:10000
STXBP1   10000 perm   2 sec   (5189 perm/sec)   p_kst 7.279000e-01   p_cons 1.380000e-01   p_joint 4.026000e-01

Outputting figure to mutsig2_images.part000000000169/STXBP1.6_1975_10000_0.7279_0.138_0.4026.png
                gene_name: STXBP1
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 15 percent done.
SULF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.053044e-01	ci left: 1.152552e-01	ci right 1.281660e-01	k: 1216	n:10000
Cons ci ratio: 2.180661e-01	ci left: 2.787955e-02	ci right 3.479702e-02	k: 312	n:10000
KS ci ratio: 4.332111e-02	ci left: 4.403148e-01	ci right 4.599142e-01	k: 4501	n:10000
SULF2   10000 perm   2 sec   (5031 perm/sec)   p_kst 4.501000e-01   p_cons 3.120000e-02   p_joint 1.216000e-01

Joint ci ratio: 8.840785e-02	ci left: 8.552962e-02	ci right 9.349019e-02	k: 1789	n:20000
Cons ci ratio: 1.513527e-01	ci left: 2.998929e-02	ci right 3.494786e-02	k: 648	n:20000
KS ci ratio: 3.045335e-02	ci left: 4.461333e-01	ci right 4.599803e-01	k: 9061	n:20000
SULF2   20000 perm   4 sec   (4531 perm/sec)   p_kst 4.530500e-01   p_cons 3.240000e-02   p_joint 8.945000e-02

Joint ci ratio: 7.788261e-02	ci left: 7.482603e-02	ci right 8.092268e-02	k: 2335	n:30000
Cons ci ratio: 1.239423e-01	ci left: 3.026347e-02	ci right 3.429444e-02	k: 967	n:30000
KS ci ratio: 2.498736e-02	ci left: 4.449914e-01	ci right 4.562848e-01	k: 13519	n:30000
SULF2   30000 perm   7 sec   (4373 perm/sec)   p_kst 4.506333e-01   p_cons 3.223333e-02   p_joint 7.783333e-02

Joint ci ratio: 6.819535e-02	ci left: 7.369208e-02	ci right 7.891962e-02	k: 3051	n:40000
Cons ci ratio: 1.067690e-01	ci left: 3.085682e-02	ci right 3.436146e-02	k: 1303	n:40000
KS ci ratio: 2.170055e-02	ci left: 4.443667e-01	ci right 4.541406e-01	k: 17970	n:40000
SULF2   40000 perm   9 sec   (4274 perm/sec)   p_kst 4.492500e-01   p_cons 3.257500e-02   p_joint 7.627500e-02

Joint ci ratio: 6.798868e-02	ci left: 6.021659e-02	ci right 6.447440e-02	k: 3116	n:50000
Cons ci ratio: 9.595467e-02	ci left: 3.074801e-02	ci right 3.386660e-02	k: 1614	n:50000
KS ci ratio: 1.933499e-02	ci left: 4.467913e-01	ci right 4.555344e-01	k: 22558	n:50000
SULF2   50000 perm   12 sec   (4177 perm/sec)   p_kst 4.511600e-01   p_cons 3.228000e-02   p_joint 6.232000e-02

Outputting figure to mutsig2_images.part000000000169/SULF2.6_2693_50000_0.45116_0.03228_0.06232.png
                gene_name: SULF2
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.064 

Current progress: 16 percent done.
SUSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.598625e-02	ci left: 5.327746e-01	ci right 5.524006e-01	k: 5426	n:10000
Cons ci ratio: 8.786218e-02	ci left: 1.586572e-01	ci right 1.733379e-01	k: 1659	n:10000
KS ci ratio: 2.207662e-02	ci left: 7.506950e-01	ci right 7.675538e-01	k: 7592	n:10000
SUSD1   10000 perm   2 sec   (4927 perm/sec)   p_kst 7.592000e-01   p_cons 1.659000e-01   p_joint 5.426000e-01

Outputting figure to mutsig2_images.part000000000169/SUSD1.6_2312_10000_0.7592_0.1659_0.5426.png
                gene_name: SUSD1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 18 percent done.
SV2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.388375e-02	ci left: 5.625333e-01	ci right 5.820246e-01	k: 5723	n:10000
Cons ci ratio: 3.902988e-02	ci left: 4.922509e-01	ci right 5.119479e-01	k: 5021	n:10000
KS ci ratio: 4.171224e-02	ci left: 4.590794e-01	ci right 4.787387e-01	k: 4689	n:10000
SV2B   10000 perm   2 sec   (5936 perm/sec)   p_kst 4.689000e-01   p_cons 5.021000e-01   p_joint 5.723000e-01

Outputting figure to mutsig2_images.part000000000169/SV2B.6_2100_10000_0.4689_0.5021_0.5723.png
                gene_name: SV2B
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 20 percent done.
STXBP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.067200e-02	ci left: 2.854779e-01	ci right 3.034419e-01	k: 2944	n:10000
Cons ci ratio: 3.589212e-02	ci left: 5.340764e-01	ci right 5.536980e-01	k: 5439	n:10000
KS ci ratio: 9.623583e-02	ci left: 1.354096e-01	ci right 1.491994e-01	k: 1422	n:10000
STXBP4   10000 perm   2 sec   (5253 perm/sec)   p_kst 1.422000e-01   p_cons 5.439000e-01   p_joint 2.944000e-01

Outputting figure to mutsig2_images.part000000000169/STXBP4.5_1726_10000_0.1422_0.5439_0.2944.png
                gene_name: STXBP4
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 21 percent done.
SUCLA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.608365e-02	ci left: 3.188987e-01	ci right 3.374015e-01	k: 3281	n:10000
Cons ci ratio: 5.255174e-02	ci left: 3.479998e-01	ci right 3.668833e-01	k: 3574	n:10000
KS ci ratio: 6.838763e-02	ci left: 2.387696e-01	ci right 2.557779e-01	k: 2472	n:10000
SUCLA2   10000 perm   2 sec   (5796 perm/sec)   p_kst 2.472000e-01   p_cons 3.574000e-01   p_joint 3.281000e-01

Outputting figure to mutsig2_images.part000000000169/SUCLA2.5_1436_10000_0.2472_0.3574_0.3281.png
                gene_name: SUCLA2
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 23 percent done.
SURF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.119563e-01	ci left: 1.030540e-01	ci right 1.153747e-01	k: 1091	n:10000
Cons ci ratio: 2.228902e-01	ci left: 2.664945e-02	ci right 3.342800e-02	k: 299	n:10000
KS ci ratio: 6.141010e-02	ci left: 2.805242e-01	ci right 2.983986e-01	k: 2894	n:10000
SURF6   10000 perm   2 sec   (5594 perm/sec)   p_kst 2.894000e-01   p_cons 2.990000e-02   p_joint 1.091000e-01

Joint ci ratio: 1.119615e-01	ci left: 5.450789e-02	ci right 6.102142e-02	k: 1154	n:20000
Cons ci ratio: 1.593999e-01	ci left: 2.700636e-02	ci right 3.173179e-02	k: 586	n:20000
KS ci ratio: 4.349241e-02	ci left: 2.825251e-01	ci right 2.951364e-01	k: 5776	n:20000
SURF6   20000 perm   4 sec   (5057 perm/sec)   p_kst 2.888000e-01   p_cons 2.930000e-02   p_joint 5.770000e-02

Joint ci ratio: 8.257658e-02	ci left: 6.697440e-02	ci right 7.277590e-02	k: 2095	n:30000
Cons ci ratio: 1.311124e-01	ci left: 2.703337e-02	ci right 3.085858e-02	k: 867	n:30000
KS ci ratio: 3.515605e-02	ci left: 2.878201e-01	ci right 2.981533e-01	k: 8789	n:30000
SURF6   30000 perm   6 sec   (4864 perm/sec)   p_kst 2.929667e-01   p_cons 2.890000e-02   p_joint 6.983333e-02

Joint ci ratio: 8.167602e-02	ci left: 5.222178e-02	ci right 5.669318e-02	k: 2177	n:40000
Cons ci ratio: 1.149527e-01	ci left: 2.662382e-02	ci right 2.989514e-02	k: 1129	n:40000
KS ci ratio: 3.039653e-02	ci left: 2.891894e-01	ci right 2.981405e-01	k: 11746	n:40000
SURF6   40000 perm   8 sec   (4792 perm/sec)   p_kst 2.936500e-01   p_cons 2.822500e-02   p_joint 5.442500e-02

Joint ci ratio: 7.111924e-02	ci left: 5.523925e-02	ci right 5.933234e-02	k: 2863	n:50000
Cons ci ratio: 1.033643e-01	ci left: 2.651294e-02	ci right 2.942221e-02	k: 1397	n:50000
KS ci ratio: 2.715967e-02	ci left: 2.900884e-01	ci right 2.980956e-01	k: 14704	n:50000
SURF6   50000 perm   11 sec   (4713 perm/sec)   p_kst 2.940800e-01   p_cons 2.794000e-02   p_joint 5.726000e-02

Joint ci ratio: 7.106261e-02	ci left: 4.654887e-02	ci right 4.999499e-02	k: 2895	n:60000
Cons ci ratio: 9.537504e-02	ci left: 2.607579e-02	ci right 2.870353e-02	k: 1642	n:60000
KS ci ratio: 2.473270e-02	ci left: 2.914523e-01	ci right 2.987676e-01	k: 17706	n:60000
SURF6   60000 perm   13 sec   (4632 perm/sec)   p_kst 2.951000e-01   p_cons 2.736667e-02   p_joint 4.825000e-02

Outputting figure to mutsig2_images.part000000000169/SURF6.5_1106_60000_0.2951_0.027367_0.04825.png
                gene_name: SURF6
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 25 percent done.
SUSD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.202174e-01	ci left: 9.029438e-02	ci right 1.019421e-01	k: 960	n:10000
Cons ci ratio: 2.370020e-02	ci left: 7.235052e-01	ci right 7.409593e-01	k: 7323	n:10000
KS ci ratio: 1.907924e-01	ci left: 3.662531e-02	ci right 4.444524e-02	k: 404	n:10000
SUSD4   10000 perm   2 sec   (5554 perm/sec)   p_kst 4.040000e-02   p_cons 7.323000e-01   p_joint 9.600000e-02

Joint ci ratio: 8.235578e-02	ci left: 9.754417e-02	ci right 1.059720e-01	k: 2034	n:20000
Cons ci ratio: 1.692772e-02	ci left: 7.221275e-01	ci right 7.345061e-01	k: 14567	n:20000
KS ci ratio: 1.323791e-01	ci left: 3.921338e-02	ci right 4.482076e-02	k: 839	n:20000
SUSD4   20000 perm   4 sec   (4989 perm/sec)   p_kst 4.195000e-02   p_cons 7.283500e-01   p_joint 1.017000e-01

Joint ci ratio: 5.186906e-02	ci left: 1.557690e-01	ci right 1.640970e-01	k: 4797	n:30000
Cons ci ratio: 1.375807e-02	ci left: 7.251051e-01	ci right 7.351837e-01	k: 21905	n:30000
KS ci ratio: 1.088110e-01	ci left: 3.920603e-02	ci right 4.374998e-02	k: 1243	n:30000
SUSD4   30000 perm   6 sec   (4788 perm/sec)   p_kst 4.143333e-02   p_cons 7.301667e-01   p_joint 1.599000e-01

Joint ci ratio: 4.731282e-02	ci left: 1.429985e-01	ci right 1.499529e-01	k: 5858	n:40000
Cons ci ratio: 1.199174e-02	ci left: 7.232334e-01	ci right 7.319836e-01	k: 29105	n:40000
KS ci ratio: 9.431259e-02	ci left: 3.944416e-02	ci right 4.337277e-02	k: 1655	n:40000
SUSD4   40000 perm   9 sec   (4655 perm/sec)   p_kst 4.137500e-02   p_cons 7.276250e-01   p_joint 1.464500e-01

Outputting figure to mutsig2_images.part000000000169/SUSD4.5_1658_40000_0.041375_0.72762_0.14645.png
                gene_name: SUSD4
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 26 percent done.
SV2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
Cons ci ratio: 8.853449e-02	ci left: 1.565950e-01	ci right 1.712014e-01	k: 1638	n:10000
KS ci ratio: 4.554104e-02	ci left: 4.157825e-01	ci right 4.352610e-01	k: 4255	n:10000
SV2A   10000 perm   2 sec   (5513 perm/sec)   p_kst 4.255000e-01   p_cons 1.638000e-01   p_joint 2.869000e-01

Outputting figure to mutsig2_images.part000000000169/SV2A.5_2277_10000_0.4255_0.1638_0.2869.png
                gene_name: SV2A
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 28 percent done.
STX1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.158652e-01	ci left: 9.671912e-02	ci right 1.087134e-01	k: 1026	n:10000
Cons ci ratio: 3.094038e-02	ci left: 6.064853e-01	ci right 6.256470e-01	k: 6161	n:10000
KS ci ratio: 1.469819e-01	ci left: 6.150035e-02	ci right 7.135407e-02	k: 663	n:10000
STX1B   10000 perm   2 sec   (6488 perm/sec)   p_kst 6.630000e-02   p_cons 6.161000e-01   p_joint 1.026000e-01

Joint ci ratio: 7.982455e-02	ci left: 1.032886e-01	ci right 1.119259e-01	k: 2151	n:20000
Cons ci ratio: 2.209488e-02	ci left: 6.046540e-01	ci right 6.182136e-01	k: 12229	n:20000
KS ci ratio: 1.041864e-01	ci left: 6.264611e-02	ci right 6.958069e-02	k: 1321	n:20000
STX1B   20000 perm   3 sec   (5768 perm/sec)   p_kst 6.605000e-02   p_cons 6.114500e-01   p_joint 1.075500e-01

Joint ci ratio: 6.564499e-02	ci left: 1.027352e-01	ci right 1.097412e-01	k: 3186	n:30000
Cons ci ratio: 1.809073e-02	ci left: 6.045872e-01	ci right 6.156581e-01	k: 18304	n:30000
KS ci ratio: 8.425248e-02	ci left: 6.445757e-02	ci right 7.015990e-02	k: 2018	n:30000
STX1B   30000 perm   6 sec   (5331 perm/sec)   p_kst 6.726667e-02   p_cons 6.101333e-01   p_joint 1.062000e-01

Outputting figure to mutsig2_images.part000000000169/STX1B.4_907_30000_0.067267_0.61013_0.1062.png
                gene_name: STX1B
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 30 percent done.
STX8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.682802e-02	ci left: 5.212613e-01	ci right 5.409206e-01	k: 5311	n:10000
Cons ci ratio: 1.745238e-02	ci left: 8.271707e-01	ci right 8.418339e-01	k: 8346	n:10000
KS ci ratio: 4.132077e-02	ci left: 4.637727e-01	ci right 4.834426e-01	k: 4736	n:10000
STX8   10000 perm   2 sec   (6056 perm/sec)   p_kst 4.736000e-01   p_cons 8.346000e-01   p_joint 5.311000e-01

Outputting figure to mutsig2_images.part000000000169/STX8.4_743_10000_0.4736_0.8346_0.5311.png
                gene_name: STX8
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 31 percent done.
STXBP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.566850e-01	ci left: 5.426821e-02	ci right 6.359080e-02	k: 588	n:10000
Cons ci ratio: 8.435169e-02	ci left: 1.700559e-01	ci right 1.851324e-01	k: 1775	n:10000
KS ci ratio: 2.067437e-01	ci left: 3.110398e-02	ci right 3.837033e-02	k: 346	n:10000
STXBP5   10000 perm   2 sec   (5074 perm/sec)   p_kst 3.460000e-02   p_cons 1.775000e-01   p_joint 5.880000e-02

Joint ci ratio: 1.201260e-01	ci left: 4.750575e-02	ci right 5.362575e-02	k: 1010	n:20000
Cons ci ratio: 5.906101e-02	ci left: 1.751421e-01	ci right 1.858510e-01	k: 3609	n:20000
KS ci ratio: 1.437437e-01	ci left: 3.326778e-02	ci right 3.846828e-02	k: 716	n:20000
STXBP5   20000 perm   4 sec   (4622 perm/sec)   p_kst 3.580000e-02   p_cons 1.804500e-01   p_joint 5.050000e-02

Joint ci ratio: 1.679557e-01	ci left: 1.633394e-02	ci right 1.936046e-02	k: 534	n:30000
Cons ci ratio: 4.804479e-02	ci left: 1.772189e-01	ci right 1.859762e-01	k: 5447	n:30000
KS ci ratio: 1.166657e-01	ci left: 3.414708e-02	ci right 3.841000e-02	k: 1087	n:30000
STXBP5   30000 perm   7 sec   (4437 perm/sec)   p_kst 3.623333e-02   p_cons 1.815667e-01   p_joint 1.780000e-02

Joint ci ratio: 1.303773e-01	ci left: 2.065741e-02	ci right 2.356254e-02	k: 883	n:40000
Cons ci ratio: 4.172748e-02	ci left: 1.769649e-01	ci right 1.845315e-01	k: 7229	n:40000
KS ci ratio: 1.014966e-01	ci left: 3.412248e-02	ci right 3.779529e-02	k: 1437	n:40000
STXBP5   40000 perm   9 sec   (4317 perm/sec)   p_kst 3.592500e-02   p_cons 1.807250e-01   p_joint 2.207500e-02

Joint ci ratio: 1.042888e-01	ci left: 2.604508e-02	ci right 2.893013e-02	k: 1373	n:50000
Cons ci ratio: 3.724053e-02	ci left: 1.780110e-01	ci right 1.847860e-01	k: 9069	n:50000
KS ci ratio: 9.103132e-02	ci left: 3.412981e-02	ci right 3.740437e-02	k: 1787	n:50000
STXBP5   50000 perm   12 sec   (4226 perm/sec)   p_kst 3.574000e-02   p_cons 1.813800e-01   p_joint 2.746000e-02

Joint ci ratio: 9.637476e-02	ci left: 2.553864e-02	ci right 2.814074e-02	k: 1609	n:60000
Cons ci ratio: 3.388937e-02	ci left: 1.792343e-01	ci right 1.854298e-01	k: 10939	n:60000
KS ci ratio: 8.226071e-02	ci left: 3.496458e-02	ci right 3.798047e-02	k: 2187	n:60000
STXBP5   60000 perm   15 sec   (4138 perm/sec)   p_kst 3.645000e-02   p_cons 1.823167e-01   p_joint 2.681667e-02

Outputting figure to mutsig2_images.part000000000169/STXBP5.4_3568_60000_0.03645_0.18232_0.026817.png
                gene_name: STXBP5
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.036 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 33 percent done.
SUFU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.036682e-02	ci left: 2.875589e-01	ci right 3.055598e-01	k: 2965	n:10000
Cons ci ratio: 6.408154e-02	ci left: 2.634937e-01	ci right 2.810391e-01	k: 2722	n:10000
KS ci ratio: 6.282798e-02	ci left: 2.713139e-01	ci right 2.890143e-01	k: 2801	n:10000
SUFU   10000 perm   2 sec   (5586 perm/sec)   p_kst 2.801000e-01   p_cons 2.722000e-01   p_joint 2.965000e-01

Outputting figure to mutsig2_images.part000000000169/SUFU.4_1513_10000_0.2801_0.2722_0.2965.png
                gene_name: SUFU
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 34 percent done.
SULT1B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.179695e-02	ci left: 5.934319e-01	ci right 6.127080e-01	k: 6031	n:10000
Cons ci ratio: 1.037541e-02	ci left: 9.295765e-01	ci right 9.393685e-01	k: 9346	n:10000
KS ci ratio: 5.159332e-02	ci left: 3.564494e-01	ci right 3.754288e-01	k: 3659	n:10000
SULT1B1   10000 perm   2 sec   (5553 perm/sec)   p_kst 3.659000e-01   p_cons 9.346000e-01   p_joint 6.031000e-01

Outputting figure to mutsig2_images.part000000000169/SULT1B1.4_919_10000_0.3659_0.9346_0.6031.png
                gene_name: SULT1B1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 36 percent done.
SUN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.938620e-02	ci left: 7.955742e-01	ci right 8.112487e-01	k: 8035	n:10000
Cons ci ratio: 4.271375e-02	ci left: 4.473000e-01	ci right 4.669250e-01	k: 4571	n:10000
KS ci ratio: 3.479914e-02	ci left: 5.494030e-01	ci right 5.689625e-01	k: 5592	n:10000
SUN3   10000 perm   2 sec   (6169 perm/sec)   p_kst 5.592000e-01   p_cons 4.571000e-01   p_joint 8.035000e-01

Outputting figure to mutsig2_images.part000000000169/SUN3.4_1114_10000_0.5592_0.4571_0.8035.png
                gene_name: SUN3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 38 percent done.
SV2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.472158e-02	ci left: 5.505053e-01	ci right 5.700595e-01	k: 5603	n:10000
Cons ci ratio: 1.838079e-01	ci left: 3.948997e-02	ci right 4.757866e-02	k: 434	n:10000
KS ci ratio: 9.971200e-03	ci left: 9.344406e-01	ci right 9.439015e-01	k: 9393	n:10000
SV2C   10000 perm   2 sec   (5894 perm/sec)   p_kst 9.393000e-01   p_cons 4.340000e-02   p_joint 5.603000e-01

Joint ci ratio: 5.269105e-02	ci left: 2.110066e-01	ci right 2.224758e-01	k: 4334	n:20000
Cons ci ratio: 1.457587e-01	ci left: 3.235107e-02	ci right 3.748530e-02	k: 697	n:20000
KS ci ratio: 7.103943e-03	ci left: 9.349787e-01	ci right 9.416932e-01	k: 18768	n:20000
SV2C   20000 perm   4 sec   (5219 perm/sec)   p_kst 9.384000e-01   p_cons 3.485000e-02   p_joint 2.167000e-01

Joint ci ratio: 2.884150e-02	ci left: 3.755662e-01	ci right 3.865902e-01	k: 11432	n:30000
Cons ci ratio: 1.173388e-01	ci left: 3.375839e-02	ci right 3.799877e-02	k: 1075	n:30000
KS ci ratio: 5.772969e-03	ci left: 9.361643e-01	ci right 9.416170e-01	k: 28168	n:30000
SV2C   30000 perm   6 sec   (4954 perm/sec)   p_kst 9.389333e-01   p_cons 3.583333e-02   p_joint 3.810667e-01

Joint ci ratio: 2.391408e-02	ci left: 3.969903e-01	ci right 4.066240e-01	k: 16072	n:40000
Cons ci ratio: 9.263300e-02	ci left: 4.086166e-02	ci right 4.485505e-02	k: 1713	n:40000
KS ci ratio: 5.025739e-03	ci left: 9.359230e-01	ci right 9.406631e-01	k: 37533	n:40000
SV2C   40000 perm   8 sec   (4785 perm/sec)   p_kst 9.383250e-01   p_cons 4.282500e-02   p_joint 4.018000e-01

Outputting figure to mutsig2_images.part000000000169/SV2C.4_2232_40000_0.93832_0.042825_0.4018.png
                gene_name: SV2C
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 39 percent done.
STX12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.304679e-02	ci left: 5.747677e-01	ci right 5.941831e-01	k: 5845	n:10000
Cons ci ratio: 9.472752e-02	ci left: 1.392311e-01	ci right 1.531757e-01	k: 1461	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
STX12   10000 perm   2 sec   (6568 perm/sec)   p_kst 1   p_cons 1.461000e-01   p_joint 5.845000e-01

Outputting figure to mutsig2_images.part000000000169/STX12.3_867_10000_1_0.1461_0.5845.png
                gene_name: STX12
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 41 percent done.
STX16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.095797e-02	ci left: 4.681673e-01	ci right 4.878455e-01	k: 4780	n:10000
Cons ci ratio: 9.883601e-03	ci left: 9.354766e-01	ci right 9.448650e-01	k: 9403	n:10000
KS ci ratio: 5.709069e-02	ci left: 3.111584e-01	ci right 3.295464e-01	k: 3203	n:10000
STX16   10000 perm   2 sec   (6405 perm/sec)   p_kst 3.203000e-01   p_cons 9.403000e-01   p_joint 4.780000e-01

Outputting figure to mutsig2_images.part000000000169/STX16.3_1014_10000_0.3203_0.9403_0.478.png
                gene_name: STX16
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 43 percent done.
STX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.183069e-02	ci left: 2.777507e-01	ci right 2.955737e-01	k: 2866	n:10000
Cons ci ratio: 4.217566e-02	ci left: 4.535883e-01	ci right 4.732330e-01	k: 4634	n:10000
KS ci ratio: 1.082099e-01	ci left: 1.096886e-01	ci right 1.223361e-01	k: 1159	n:10000
STX2   10000 perm   2 sec   (6374 perm/sec)   p_kst 1.159000e-01   p_cons 4.634000e-01   p_joint 2.866000e-01

Joint ci ratio: 6.136585e-02	ci left: 1.642247e-01	ci right 1.746715e-01	k: 3388	n:20000
Cons ci ratio: 2.976525e-02	ci left: 4.574687e-01	ci right 4.713417e-01	k: 9288	n:20000
KS ci ratio: 7.661082e-02	ci left: 1.112981e-01	ci right 1.202140e-01	k: 2314	n:20000
STX2   20000 perm   4 sec   (5596 perm/sec)   p_kst 1.157000e-01   p_cons 4.644000e-01   p_joint 1.694000e-01

Outputting figure to mutsig2_images.part000000000169/STX2.3_989_20000_0.1157_0.4644_0.1694.png
                gene_name: STX2
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 44 percent done.
STX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.964358e-02	ci left: 7.913132e-01	ci right 8.071121e-01	k: 7993	n:10000
Cons ci ratio: 4.292950e-02	ci left: 4.448051e-01	ci right 4.644214e-01	k: 4546	n:10000
KS ci ratio: 3.053635e-02	ci left: 6.127133e-01	ci right 6.318154e-01	k: 6223	n:10000
STX3   10000 perm   2 sec   (6388 perm/sec)   p_kst 6.223000e-01   p_cons 4.546000e-01   p_joint 7.993000e-01

Outputting figure to mutsig2_images.part000000000169/STX3.3_962_10000_0.6223_0.4546_0.7993.png
                gene_name: STX3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 46 percent done.
STX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.062302e-02	ci left: 4.722629e-01	ci right 4.919476e-01	k: 4821	n:10000
Cons ci ratio: 7.344587e-02	ci left: 2.134918e-01	ci right 2.298706e-01	k: 2216	n:10000
KS ci ratio: 2.939100e-02	ci left: 6.306030e-01	ci right 6.495153e-01	k: 6401	n:10000
STX5   10000 perm   1 sec   (6751 perm/sec)   p_kst 6.401000e-01   p_cons 2.216000e-01   p_joint 4.821000e-01

Outputting figure to mutsig2_images.part000000000169/STX5.3_1108_10000_0.6401_0.2216_0.4821.png
                gene_name: STX5
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 48 percent done.
STX7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.111015e-01	ci left: 1.045169e-01	ci right 1.169109e-01	k: 1106	n:10000
Cons ci ratio: 7.245979e-02	ci left: 2.181294e-01	ci right 2.346303e-01	k: 2263	n:10000
KS ci ratio: 1.751436e-01	ci left: 4.350916e-02	ci right 5.195681e-02	k: 476	n:10000
STX7   10000 perm   2 sec   (6537 perm/sec)   p_kst 4.760000e-02   p_cons 2.263000e-01   p_joint 1.106000e-01

Joint ci ratio: 1.120129e-01	ci left: 5.445922e-02	ci right 6.097011e-02	k: 1153	n:20000
Cons ci ratio: 5.082399e-02	ci left: 2.233895e-01	ci right 2.350893e-01	k: 4584	n:20000
KS ci ratio: 1.289706e-01	ci left: 4.129596e-02	ci right 4.703752e-02	k: 882	n:20000
STX7   20000 perm   3 sec   (5746 perm/sec)   p_kst 4.410000e-02   p_cons 2.292000e-01   p_joint 5.765000e-02

Joint ci ratio: 7.713315e-02	ci left: 7.620107e-02	ci right 8.234736e-02	k: 2377	n:30000
Cons ci ratio: 4.177563e-02	ci left: 2.221375e-01	ci right 2.316488e-01	k: 6806	n:30000
KS ci ratio: 1.051596e-01	ci left: 4.193421e-02	ci right 4.662123e-02	k: 1327	n:30000
STX7   30000 perm   5 sec   (5460 perm/sec)   p_kst 4.423333e-02   p_cons 2.268667e-01   p_joint 7.923333e-02

Joint ci ratio: 6.516883e-02	ci left: 8.024036e-02	ci right 8.567036e-02	k: 3317	n:40000
Cons ci ratio: 3.623822e-02	ci left: 2.222069e-01	ci right 2.304329e-01	k: 9052	n:40000
KS ci ratio: 9.201772e-02	ci left: 4.139949e-02	ci right 4.541714e-02	k: 1735	n:40000
STX7   40000 perm   8 sec   (5221 perm/sec)   p_kst 4.337500e-02   p_cons 2.263000e-01   p_joint 8.292500e-02

Outputting figure to mutsig2_images.part000000000169/STX7.3_822_40000_0.043375_0.2263_0.082925.png
                gene_name: STX7
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.086 

Current progress: 49 percent done.
STXBP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.359749e-02	ci left: 7.252223e-01	ci right 7.426412e-01	k: 7340	n:10000
KS ci ratio: 3.933545e-02	ci left: 4.883520e-01	ci right 5.080491e-01	k: 4982	n:10000
STXBP6   10000 perm   1 sec   (7295 perm/sec)   p_kst 4.982000e-01   p_cons 7.340000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/STXBP6.3_653_10000_0.4982_0.734_1.png
                gene_name: STXBP6
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
SULT1C4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.829804e-01	ci left: 1.538312e-03	ci right 3.568919e-03	k: 24	n:10000
Cons ci ratio: 7.705195e-02	ci left: 1.976171e-01	ci right 2.135548e-01	k: 2055	n:10000
KS ci ratio: 6.521239e-01	ci left: 2.439052e-03	ci right 4.864323e-03	k: 35	n:10000
SULT1C4   10000 perm   2 sec   (6056 perm/sec)   p_kst 3.500000e-03   p_cons 2.055000e-01   p_joint 2.400000e-03

Joint ci ratio: 4.817099e-01	ci left: 2.509150e-03	ci right 4.140543e-03	k: 65	n:20000
Cons ci ratio: 5.427699e-02	ci left: 2.012049e-01	ci right 2.124805e-01	k: 4136	n:20000
KS ci ratio: 4.817099e-01	ci left: 2.509150e-03	ci right 4.140543e-03	k: 65	n:20000
SULT1C4   20000 perm   4 sec   (5454 perm/sec)   p_kst 3.250000e-03   p_cons 2.068000e-01   p_joint 3.250000e-03

Joint ci ratio: 5.484339e-01	ci left: 1.237277e-03	ci right 2.196709e-03	k: 50	n:30000
Cons ci ratio: 4.457311e-02	ci left: 2.003777e-01	ci right 2.095461e-01	k: 6148	n:30000
KS ci ratio: 4.058478e-01	ci left: 2.472860e-03	ci right 3.759688e-03	k: 92	n:30000
SULT1C4   30000 perm   6 sec   (5267 perm/sec)   p_kst 3.066667e-03   p_cons 2.049333e-01   p_joint 1.666667e-03

Joint ci ratio: 4.858149e-01	ci left: 1.232406e-03	ci right 2.042711e-03	k: 64	n:40000
Cons ci ratio: 3.866283e-02	ci left: 2.004820e-01	ci right 2.084110e-01	k: 8177	n:40000
KS ci ratio: 3.603281e-01	ci left: 2.419637e-03	ci right 3.504518e-03	k: 117	n:40000
SULT1C4   40000 perm   8 sec   (5135 perm/sec)   p_kst 2.925000e-03   p_cons 2.044250e-01   p_joint 1.600000e-03

Joint ci ratio: 3.164248e-01	ci left: 2.576504e-03	ci right 3.562591e-03	k: 152	n:50000
Cons ci ratio: 3.445513e-02	ci left: 2.020847e-01	ci right 2.091895e-01	k: 10281	n:50000
KS ci ratio: 3.164248e-01	ci left: 2.576504e-03	ci right 3.562591e-03	k: 152	n:50000
SULT1C4   50000 perm   10 sec   (5016 perm/sec)   p_kst 3.040000e-03   p_cons 2.056200e-01   p_joint 3.040000e-03

Joint ci ratio: 2.917385e-01	ci left: 2.562803e-03	ci right 3.453014e-03	k: 179	n:60000
Cons ci ratio: 3.157460e-02	ci left: 2.011462e-01	ci right 2.076158e-01	k: 12262	n:60000
KS ci ratio: 2.917385e-01	ci left: 2.562803e-03	ci right 3.453014e-03	k: 179	n:60000
SULT1C4   60000 perm   12 sec   (4914 perm/sec)   p_kst 2.983333e-03   p_cons 2.043667e-01   p_joint 2.983333e-03

Joint ci ratio: 3.652389e-01	ci left: 1.343553e-03	ci right 1.956091e-03	k: 114	n:70000
Cons ci ratio: 2.919886e-02	ci left: 2.017588e-01	ci right 2.077514e-01	k: 14332	n:70000
KS ci ratio: 2.656923e-01	ci left: 2.688417e-03	ci right 3.525041e-03	k: 216	n:70000
SULT1C4   70000 perm   14 sec   (4830 perm/sec)   p_kst 3.085714e-03   p_cons 2.047429e-01   p_joint 1.628571e-03

Joint ci ratio: 3.422093e-01	ci left: 1.357856e-03	ci right 1.929262e-03	k: 130	n:80000
Cons ci ratio: 2.735355e-02	ci left: 2.014733e-01	ci right 2.070732e-01	k: 16341	n:80000
KS ci ratio: 2.495440e-01	ci left: 2.691478e-03	ci right 3.470250e-03	k: 245	n:80000
SULT1C4   80000 perm   17 sec   (4751 perm/sec)   p_kst 3.062500e-03   p_cons 2.042625e-01   p_joint 1.625000e-03

Joint ci ratio: 3.275445e-01	ci left: 1.329107e-03	ci right 1.859405e-03	k: 142	n:90000
Cons ci ratio: 2.572742e-02	ci left: 2.024107e-01	ci right 2.076972e-01	k: 18454	n:90000
KS ci ratio: 2.395427e-01	ci left: 2.611451e-03	ci right 3.332287e-03	k: 266	n:90000
SULT1C4   90000 perm   19 sec   (4674 perm/sec)   p_kst 2.955556e-03   p_cons 2.050444e-01   p_joint 1.577778e-03

Joint ci ratio: 3.116104e-01	ci left: 1.334172e-03	ci right 1.835450e-03	k: 157	n:100000
Cons ci ratio: 2.439637e-02	ci left: 2.026906e-01	ci right 2.077065e-01	k: 20519	n:100000
KS ci ratio: 2.267398e-01	ci left: 2.642216e-03	ci right 3.327116e-03	k: 297	n:100000
SULT1C4   100000 perm   22 sec   (4599 perm/sec)   p_kst 2.970000e-03   p_cons 2.051900e-01   p_joint 1.570000e-03

Joint ci ratio: 2.927547e-01	ci left: 1.389339e-03	ci right 1.873910e-03	k: 178	n:110000
Cons ci ratio: 2.323384e-02	ci left: 2.031878e-01	ci right 2.079732e-01	k: 22613	n:110000
KS ci ratio: 2.144883e-01	ci left: 2.702634e-03	ci right 3.360365e-03	k: 332	n:110000
SULT1C4   110000 perm   24 sec   (4525 perm/sec)   p_kst 3.018182e-03   p_cons 2.055727e-01   p_joint 1.618182e-03

Joint ci ratio: 2.819396e-01	ci left: 1.381821e-03	ci right 1.842802e-03	k: 192	n:120000
Cons ci ratio: 2.224234e-02	ci left: 2.033247e-01	ci right 2.079062e-01	k: 24673	n:120000
KS ci ratio: 2.048690e-01	ci left: 2.730089e-03	ci right 3.360973e-03	k: 364	n:120000
SULT1C4   120000 perm   27 sec   (4452 perm/sec)   p_kst 3.033333e-03   p_cons 2.056083e-01   p_joint 1.600000e-03

Joint ci ratio: 2.729018e-01	ci left: 1.368571e-03	ci right 1.807988e-03	k: 205	n:130000
Cons ci ratio: 2.136782e-02	ci left: 2.034442e-01	ci right 2.078459e-01	k: 26733	n:130000
KS ci ratio: 1.966864e-01	ci left: 2.746561e-03	ci right 3.352865e-03	k: 395	n:130000
SULT1C4   130000 perm   30 sec   (4383 perm/sec)   p_kst 3.038462e-03   p_cons 2.056385e-01   p_joint 1.576923e-03

Joint ci ratio: 2.582638e-01	ci left: 1.430846e-03	ci right 1.861646e-03	k: 229	n:140000
Cons ci ratio: 2.064222e-02	ci left: 2.027100e-01	ci right 2.069451e-01	k: 28675	n:140000
KS ci ratio: 1.844927e-01	ci left: 2.917729e-03	ci right 3.517424e-03	k: 449	n:140000
SULT1C4   140000 perm   32 sec   (4315 perm/sec)   p_kst 3.207143e-03   p_cons 2.048214e-01   p_joint 1.635714e-03

Joint ci ratio: 2.467285e-01	ci left: 1.472850e-03	ci right 1.893455e-03	k: 251	n:150000
Cons ci ratio: 1.994158e-02	ci left: 2.027934e-01	ci right 2.068847e-01	k: 30725	n:150000
KS ci ratio: 1.775259e-01	ci left: 2.952346e-03	ci right 3.533784e-03	k: 485	n:150000
SULT1C4   150000 perm   35 sec   (4245 perm/sec)   p_kst 3.233333e-03   p_cons 2.048333e-01   p_joint 1.673333e-03

Joint ci ratio: 2.415181e-01	ci left: 1.445339e-03	ci right 1.848065e-03	k: 262	n:160000
Cons ci ratio: 1.934600e-02	ci left: 2.022270e-01	ci right 2.061837e-01	k: 32672	n:160000
KS ci ratio: 1.736450e-01	ci left: 2.899275e-03	ci right 3.456469e-03	k: 507	n:160000
SULT1C4   160000 perm   38 sec   (4177 perm/sec)   p_kst 3.168750e-03   p_cons 2.042000e-01   p_joint 1.637500e-03

Joint ci ratio: 2.344909e-01	ci left: 1.448826e-03	ci right 1.839074e-03	k: 278	n:170000
Cons ci ratio: 1.877996e-02	ci left: 2.020866e-01	ci right 2.059235e-01	k: 34680	n:170000
KS ci ratio: 1.695272e-01	ci left: 2.869469e-03	ci right 3.406520e-03	k: 532	n:170000
SULT1C4   170000 perm   41 sec   (4110 perm/sec)   p_kst 3.129412e-03   p_cons 2.040000e-01   p_joint 1.635294e-03

Joint ci ratio: 2.268908e-01	ci left: 1.467794e-03	ci right 1.848545e-03	k: 297	n:180000
Cons ci ratio: 1.825617e-02	ci left: 2.020463e-01	ci right 2.057744e-01	k: 36703	n:180000
KS ci ratio: 1.643646e-01	ci left: 2.891055e-03	ci right 3.414039e-03	k: 566	n:180000
SULT1C4   180000 perm   45 sec   (4037 perm/sec)   p_kst 3.144444e-03   p_cons 2.039056e-01   p_joint 1.650000e-03

Joint ci ratio: 2.203332e-01	ci left: 1.479974e-03	ci right 1.851286e-03	k: 315	n:190000
Cons ci ratio: 1.778052e-02	ci left: 2.018910e-01	ci right 2.055181e-01	k: 38703	n:190000
KS ci ratio: 1.597800e-01	ci left: 2.905536e-03	ci right 3.415073e-03	k: 599	n:190000
SULT1C4   190000 perm   48 sec   (3977 perm/sec)   p_kst 3.152632e-03   p_cons 2.037000e-01   p_joint 1.657895e-03

Joint ci ratio: 2.159382e-01	ci left: 1.467423e-03	ci right 1.827269e-03	k: 328	n:200000
Cons ci ratio: 1.734316e-02	ci left: 2.016975e-01	ci right 2.052311e-01	k: 40692	n:200000
KS ci ratio: 1.561789e-01	ci left: 2.894724e-03	ci right 3.389851e-03	k: 627	n:200000
SULT1C4   200000 perm   51 sec   (3919 perm/sec)   p_kst 3.135000e-03   p_cons 2.034600e-01   p_joint 1.640000e-03

Joint ci ratio: 2.114867e-01	ci left: 1.460644e-03	ci right 1.810486e-03	k: 342	n:210000
Cons ci ratio: 1.691566e-02	ci left: 2.019222e-01	ci right 2.053717e-01	k: 42765	n:210000
KS ci ratio: 1.526940e-01	ci left: 2.889638e-03	ci right 3.371858e-03	k: 656	n:210000
SULT1C4   210000 perm   54 sec   (3863 perm/sec)   p_kst 3.123810e-03   p_cons 2.036429e-01   p_joint 1.628571e-03

Joint ci ratio: 2.061460e-01	ci left: 1.471792e-03	ci right 1.814280e-03	k: 360	n:220000
Cons ci ratio: 1.653774e-02	ci left: 2.017468e-01	ci right 2.051156e-01	k: 44754	n:220000
KS ci ratio: 1.486734e-01	ci left: 2.915761e-03	ci right 3.388389e-03	k: 692	n:220000
SULT1C4   220000 perm   58 sec   (3809 perm/sec)   p_kst 3.145455e-03   p_cons 2.034273e-01   p_joint 1.636364e-03

Joint ci ratio: 2.017243e-01	ci left: 1.473814e-03	ci right 1.808511e-03	k: 376	n:230000
Cons ci ratio: 1.616996e-02	ci left: 2.018692e-01	ci right 2.051643e-01	k: 46808	n:230000
KS ci ratio: 1.450544e-01	ci left: 2.935573e-03	ci right 3.398827e-03	k: 727	n:230000
SULT1C4   230000 perm   61 sec   (3756 perm/sec)   p_kst 3.160870e-03   p_cons 2.035130e-01   p_joint 1.634783e-03

Joint ci ratio: 1.975755e-01	ci left: 1.475740e-03	ci right 1.803151e-03	k: 392	n:240000
Cons ci ratio: 1.584257e-02	ci left: 2.016374e-01	ci right 2.048615e-01	k: 48779	n:240000
KS ci ratio: 1.418741e-01	ci left: 2.945823e-03	ci right 3.399640e-03	k: 760	n:240000
SULT1C4   240000 perm   65 sec   (3707 perm/sec)   p_kst 3.166667e-03   p_cons 2.032458e-01   p_joint 1.633333e-03

Joint ci ratio: 1.931999e-01	ci left: 1.485189e-03	ci right 1.806542e-03	k: 410	n:250000
Cons ci ratio: 1.551971e-02	ci left: 2.017278e-01	ci right 2.048870e-01	k: 50826	n:250000
KS ci ratio: 1.390700e-01	ci left: 2.947633e-03	ci right 3.392009e-03	k: 791	n:250000
SULT1C4   250000 perm   68 sec   (3661 perm/sec)   p_kst 3.164000e-03   p_cons 2.033040e-01   p_joint 1.640000e-03

Joint ci ratio: 1.899921e-01	ci left: 1.479329e-03	ci right 1.793486e-03	k: 424	n:260000
Cons ci ratio: 1.521076e-02	ci left: 2.019194e-01	ci right 2.050180e-01	k: 52901	n:260000
KS ci ratio: 1.368435e-01	ci left: 2.930809e-03	ci right 3.364999e-03	k: 817	n:260000
SULT1C4   260000 perm   72 sec   (3615 perm/sec)   p_kst 3.142308e-03   p_cons 2.034654e-01   p_joint 1.630769e-03

Joint ci ratio: 1.873669e-01	ci left: 1.466884e-03	ci right 1.773603e-03	k: 436	n:270000
Cons ci ratio: 1.493251e-02	ci left: 2.018165e-01	ci right 2.048565e-01	k: 54900	n:270000
KS ci ratio: 1.342428e-01	ci left: 2.936761e-03	ci right 3.362904e-03	k: 849	n:270000
SULT1C4   270000 perm   76 sec   (3571 perm/sec)   p_kst 3.144444e-03   p_cons 2.033333e-01   p_joint 1.614815e-03

Joint ci ratio: 1.840283e-01	ci left: 1.468982e-03	ci right 1.770056e-03	k: 452	n:280000
Cons ci ratio: 1.466139e-02	ci left: 2.018890e-01	ci right 2.048743e-01	k: 56946	n:280000
KS ci ratio: 1.311895e-01	ci left: 2.969994e-03	ci right 3.390393e-03	k: 889	n:280000
SULT1C4   280000 perm   79 sec   (3527 perm/sec)   p_kst 3.175000e-03   p_cons 2.033786e-01   p_joint 1.614286e-03

Joint ci ratio: 1.820321e-01	ci left: 1.451229e-03	ci right 1.745082e-03	k: 462	n:290000
Cons ci ratio: 1.440897e-02	ci left: 2.018571e-01	ci right 2.047902e-01	k: 58963	n:290000
KS ci ratio: 1.291036e-01	ci left: 2.964324e-03	ci right 3.376738e-03	k: 918	n:290000
SULT1C4   290000 perm   83 sec   (3484 perm/sec)   p_kst 3.165517e-03   p_cons 2.033207e-01   p_joint 1.593103e-03

Joint ci ratio: 1.780377e-01	ci left: 1.469701e-03	ci right 1.760062e-03	k: 483	n:300000
Cons ci ratio: 1.417135e-02	ci left: 2.017780e-01	ci right 2.046611e-01	k: 60965	n:300000
KS ci ratio: 1.267792e-01	ci left: 2.975220e-03	ci right 3.381138e-03	k: 952	n:300000
SULT1C4   300000 perm   87 sec   (3440 perm/sec)   p_kst 3.173333e-03   p_cons 2.032167e-01   p_joint 1.610000e-03

Joint ci ratio: 1.758720e-01	ci left: 1.459286e-03	ci right 1.743710e-03	k: 495	n:310000
Cons ci ratio: 1.394287e-02	ci left: 2.017558e-01	ci right 2.045917e-01	k: 62983	n:310000
KS ci ratio: 1.250856e-01	ci left: 2.960473e-03	ci right 3.358582e-03	k: 978	n:310000
SULT1C4   310000 perm   91 sec   (3395 perm/sec)   p_kst 3.154839e-03   p_cons 2.031710e-01   p_joint 1.596774e-03

Joint ci ratio: 1.727646e-01	ci left: 1.467480e-03	ci right 1.747920e-03	k: 513	n:320000
Cons ci ratio: 1.372710e-02	ci left: 2.016885e-01	ci right 2.044793e-01	k: 64986	n:320000
KS ci ratio: 1.233350e-01	ci left: 2.952738e-03	ci right 3.343845e-03	k: 1006	n:320000
SULT1C4   320000 perm   95 sec   (3351 perm/sec)   p_kst 3.143750e-03   p_cons 2.030812e-01   p_joint 1.603125e-03

Joint ci ratio: 1.698162e-01	ci left: 1.475218e-03	ci right 1.751834e-03	k: 531	n:330000
Cons ci ratio: 1.351939e-02	ci left: 2.016650e-01	ci right 2.044129e-01	k: 67002	n:330000
KS ci ratio: 1.218331e-01	ci left: 2.936695e-03	ci right 3.320598e-03	k: 1031	n:330000
SULT1C4   330000 perm   100 sec   (3308 perm/sec)   p_kst 3.124242e-03   p_cons 2.030364e-01   p_joint 1.609091e-03

Joint ci ratio: 1.662586e-01	ci left: 1.496633e-03	ci right 1.770796e-03	k: 554	n:340000
Cons ci ratio: 1.332217e-02	ci left: 2.016109e-01	ci right 2.043177e-01	k: 69007	n:340000
KS ci ratio: 1.198176e-01	ci left: 2.950152e-03	ci right 3.328983e-03	k: 1066	n:340000
SULT1C4   340000 perm   104 sec   (3266 perm/sec)   p_kst 3.135294e-03   p_cons 2.029618e-01   p_joint 1.629412e-03

Joint ci ratio: 1.636260e-01	ci left: 1.503179e-03	ci right 1.773751e-03	k: 572	n:350000
Cons ci ratio: 1.312660e-02	ci left: 2.017255e-01	ci right 2.043937e-01	k: 71070	n:350000
KS ci ratio: 1.179526e-01	ci left: 2.960117e-03	ci right 3.333898e-03	k: 1100	n:350000
SULT1C4   350000 perm   109 sec   (3226 perm/sec)   p_kst 3.142857e-03   p_cons 2.030571e-01   p_joint 1.634286e-03

Joint ci ratio: 1.612513e-01	ci left: 1.506726e-03	ci right 1.773620e-03	k: 589	n:360000
Cons ci ratio: 1.294018e-02	ci left: 2.018145e-01	ci right 2.044458e-01	k: 73126	n:360000
KS ci ratio: 1.166369e-01	ci left: 2.945297e-03	ci right 3.312773e-03	k: 1125	n:360000
SULT1C4   360000 perm   113 sec   (3180 perm/sec)   p_kst 3.125000e-03   p_cons 2.031278e-01   p_joint 1.636111e-03

Joint ci ratio: 1.595044e-01	ci left: 1.499729e-03	ci right 1.762229e-03	k: 602	n:370000
Cons ci ratio: 1.276170e-02	ci left: 2.018937e-01	ci right 2.044894e-01	k: 75180	n:370000
KS ci ratio: 1.153643e-01	ci left: 2.931300e-03	ci right 3.292767e-03	k: 1150	n:370000
SULT1C4   370000 perm   118 sec   (3143 perm/sec)   p_kst 3.108108e-03   p_cons 2.031892e-01   p_joint 1.627027e-03

Joint ci ratio: 1.578130e-01	ci left: 1.493114e-03	ci right 1.751423e-03	k: 615	n:380000
Cons ci ratio: 1.258887e-02	ci left: 2.020082e-01	ci right 2.045700e-01	k: 77249	n:380000
KS ci ratio: 1.140837e-01	ci left: 2.920618e-03	ci right 3.276500e-03	k: 1176	n:380000
SULT1C4   380000 perm   122 sec   (3108 perm/sec)   p_kst 3.094737e-03   p_cons 2.032868e-01   p_joint 1.618421e-03

Joint ci ratio: 1.567998e-01	ci left: 1.474533e-03	ci right 1.727836e-03	k: 623	n:390000
Cons ci ratio: 1.242770e-02	ci left: 2.019918e-01	ci right 2.045203e-01	k: 79269	n:390000
KS ci ratio: 1.129391e-01	ci left: 2.905520e-03	ci right 3.255774e-03	k: 1200	n:390000
SULT1C4   390000 perm   127 sec   (3073 perm/sec)   p_kst 3.076923e-03   p_cons 2.032538e-01   p_joint 1.597436e-03

Joint ci ratio: 1.543450e-01	ci left: 1.485724e-03	ci right 1.736584e-03	k: 643	n:400000
Cons ci ratio: 1.226565e-02	ci left: 2.021585e-01	ci right 2.046558e-01	k: 81362	n:400000
KS ci ratio: 1.115091e-01	ci left: 2.908207e-03	ci right 3.254054e-03	k: 1231	n:400000
SULT1C4   400000 perm   132 sec   (3037 perm/sec)   p_kst 3.077500e-03   p_cons 2.034050e-01   p_joint 1.607500e-03

Joint ci ratio: 1.526946e-01	ci left: 1.482321e-03	ci right 1.729686e-03	k: 657	n:410000
Cons ci ratio: 1.211205e-02	ci left: 2.022564e-01	ci right 2.047234e-01	k: 83430	n:410000
KS ci ratio: 1.102197e-01	ci left: 2.906045e-03	ci right 3.247379e-03	k: 1260	n:410000
SULT1C4   410000 perm   137 sec   (3002 perm/sec)   p_kst 3.073171e-03   p_cons 2.034878e-01   p_joint 1.602439e-03

Joint ci ratio: 1.504250e-01	ci left: 1.492842e-03	ci right 1.737926e-03	k: 677	n:420000
Cons ci ratio: 1.196575e-02	ci left: 2.023047e-01	ci right 2.047423e-01	k: 85479	n:420000
KS ci ratio: 1.086366e-01	ci left: 2.922539e-03	ci right 3.260564e-03	k: 1297	n:420000
SULT1C4   420000 perm   141 sec   (2968 perm/sec)   p_kst 3.088095e-03   p_cons 2.035214e-01   p_joint 1.611905e-03

Joint ci ratio: 1.482535e-01	ci left: 1.502899e-03	ci right 1.745756e-03	k: 697	n:430000
Cons ci ratio: 1.182225e-02	ci left: 2.024158e-01	ci right 2.048254e-01	k: 87556	n:430000
KS ci ratio: 1.071601e-01	ci left: 2.936035e-03	ci right 3.270716e-03	k: 1333	n:430000
SULT1C4   430000 perm   147 sec   (2935 perm/sec)   p_kst 3.100000e-03   p_cons 2.036186e-01   p_joint 1.620930e-03

Joint ci ratio: 1.467891e-01	ci left: 1.499385e-03	ci right 1.739072e-03	k: 711	n:440000
Cons ci ratio: 1.168814e-02	ci left: 2.024019e-01	ci right 2.047838e-01	k: 89580	n:440000
KS ci ratio: 1.058973e-01	ci left: 2.940097e-03	ci right 3.271045e-03	k: 1365	n:440000
SULT1C4   440000 perm   152 sec   (2903 perm/sec)   p_kst 3.102273e-03   p_cons 2.035909e-01   p_joint 1.615909e-03

Joint ci ratio: 1.454677e-01	ci left: 1.493898e-03	ci right 1.730371e-03	k: 724	n:450000
Cons ci ratio: 1.156015e-02	ci left: 2.023422e-01	ci right 2.046971e-01	k: 91583	n:450000
KS ci ratio: 1.046782e-01	ci left: 2.944000e-03	ci right 3.271338e-03	k: 1397	n:450000
SULT1C4   450000 perm   157 sec   (2871 perm/sec)   p_kst 3.104444e-03   p_cons 2.035178e-01   p_joint 1.608889e-03

Joint ci ratio: 1.442792e-01	ci left: 1.486563e-03	ci right 1.719787e-03	k: 736	n:460000
Cons ci ratio: 1.143267e-02	ci left: 2.023872e-01	ci right 2.047165e-01	k: 93633	n:460000
KS ci ratio: 1.035003e-01	ci left: 2.947755e-03	ci right 3.271597e-03	k: 1429	n:460000
SULT1C4   460000 perm   162 sec   (2843 perm/sec)   p_kst 3.106522e-03   p_cons 2.035500e-01   p_joint 1.600000e-03

Joint ci ratio: 1.421719e-01	ci left: 1.500066e-03	ci right 1.731679e-03	k: 758	n:470000
Cons ci ratio: 1.130746e-02	ci left: 2.024835e-01	ci right 2.047882e-01	k: 95708	n:470000
KS ci ratio: 1.023612e-01	ci left: 2.951369e-03	ci right 3.271826e-03	k: 1461	n:470000
SULT1C4   470000 perm   167 sec   (2813 perm/sec)   p_kst 3.108511e-03   p_cons 2.036340e-01   p_joint 1.612766e-03

Joint ci ratio: 1.406059e-01	ci left: 1.502979e-03	ci right 1.732271e-03	k: 775	n:480000
Cons ci ratio: 1.119031e-02	ci left: 2.024595e-01	ci right 2.047399e-01	k: 97727	n:480000
KS ci ratio: 1.010556e-01	ci left: 2.967037e-03	ci right 3.284841e-03	k: 1499	n:480000
SULT1C4   480000 perm   172 sec   (2784 perm/sec)   p_kst 3.122917e-03   p_cons 2.035979e-01   p_joint 1.614583e-03

Joint ci ratio: 1.400669e-01	ci left: 1.484119e-03	ci right 1.709595e-03	k: 781	n:490000
Cons ci ratio: 1.107393e-02	ci left: 2.025181e-01	ci right 2.047752e-01	k: 99786	n:490000
KS ci ratio: 1.005557e-01	ci left: 2.936323e-03	ci right 3.249190e-03	k: 1514	n:490000
SULT1C4   490000 perm   178 sec   (2755 perm/sec)   p_kst 3.089796e-03   p_cons 2.036449e-01   p_joint 1.593878e-03

Joint ci ratio: 1.390050e-01	ci left: 1.477599e-03	ci right 1.700240e-03	k: 793	n:500000
Cons ci ratio: 1.096584e-02	ci left: 2.024347e-01	ci right 2.046688e-01	k: 101775	n:500000
KS ci ratio: 9.957478e-02	ci left: 2.936095e-03	ci right 3.245708e-03	k: 1544	n:500000
SULT1C4   500000 perm   183 sec   (2727 perm/sec)   p_kst 3.088000e-03   p_cons 2.035500e-01   p_joint 1.586000e-03

Joint ci ratio: 1.380526e-01	ci left: 1.469447e-03	ci right 1.689219e-03	k: 804	n:510000
Cons ci ratio: 1.086256e-02	ci left: 2.023038e-01	ci right 2.045153e-01	k: 103738	n:510000
KS ci ratio: 9.893754e-02	ci left: 2.916765e-03	ci right 3.222257e-03	k: 1564	n:510000
SULT1C4   510000 perm   189 sec   (2700 perm/sec)   p_kst 3.066667e-03   p_cons 2.034078e-01   p_joint 1.576471e-03

Joint ci ratio: 1.364513e-01	ci left: 1.476473e-03	ci right 1.694526e-03	k: 823	n:520000
Cons ci ratio: 1.075704e-02	ci left: 2.023316e-01	ci right 2.045217e-01	k: 105781	n:520000
KS ci ratio: 9.772656e-02	ci left: 2.933830e-03	ci right 3.237133e-03	k: 1603	n:520000
SULT1C4   520000 perm   194 sec   (2674 perm/sec)   p_kst 3.082692e-03   p_cons 2.034250e-01   p_joint 1.582692e-03

Joint ci ratio: 1.353879e-01	ci left: 1.472309e-03	ci right 1.687916e-03	k: 836	n:530000
Cons ci ratio: 1.065863e-02	ci left: 2.022341e-01	ci right 2.044031e-01	k: 107758	n:530000
KS ci ratio: 9.700417e-02	ci left: 2.922654e-03	ci right 3.222441e-03	k: 1627	n:530000
SULT1C4   530000 perm   200 sec   (2648 perm/sec)   p_kst 3.069811e-03   p_cons 2.033170e-01   p_joint 1.577358e-03

Joint ci ratio: 1.337982e-01	ci left: 1.480834e-03	ci right 1.694941e-03	k: 856	n:540000
Cons ci ratio: 1.056094e-02	ci left: 2.021995e-01	ci right 2.043481e-01	k: 109767	n:540000
KS ci ratio: 9.594864e-02	ci left: 2.933590e-03	ci right 3.231040e-03	k: 1663	n:540000
SULT1C4   540000 perm   206 sec   (2622 perm/sec)   p_kst 3.079630e-03   p_cons 2.032722e-01   p_joint 1.585185e-03

Joint ci ratio: 1.325664e-01	ci left: 1.482031e-03	ci right 1.694183e-03	k: 872	n:550000
Cons ci ratio: 1.046447e-02	ci left: 2.022098e-01	ci right 2.043388e-01	k: 111800	n:550000
KS ci ratio: 9.515168e-02	ci left: 2.929944e-03	ci right 3.224420e-03	k: 1691	n:550000
SULT1C4   550000 perm   212 sec   (2597 perm/sec)   p_kst 3.074545e-03   p_cons 2.032727e-01   p_joint 1.585455e-03

Joint ci ratio: 1.308531e-01	ci left: 1.495285e-03	ci right 1.706353e-03	k: 895	n:560000
Cons ci ratio: 1.037346e-02	ci left: 2.021307e-01	ci right 2.042402e-01	k: 113783	n:560000
KS ci ratio: 9.423695e-02	ci left: 2.935157e-03	ci right 3.227164e-03	k: 1724	n:560000
SULT1C4   560000 perm   218 sec   (2572 perm/sec)   p_kst 3.078571e-03   p_cons 2.031839e-01   p_joint 1.598214e-03

Joint ci ratio: 1.297715e-01	ci left: 1.494510e-03	ci right 1.703590e-03	k: 910	n:570000
Cons ci ratio: 1.027738e-02	ci left: 2.022874e-01	ci right 2.043788e-01	k: 115899	n:570000
KS ci ratio: 9.348154e-02	ci left: 2.931633e-03	ci right 3.220823e-03	k: 1752	n:570000
SULT1C4   570000 perm   224 sec   (2548 perm/sec)   p_kst 3.073684e-03   p_cons 2.033316e-01   p_joint 1.596491e-03

Joint ci ratio: 1.285079e-01	ci left: 1.498775e-03	ci right 1.706254e-03	k: 928	n:580000
Cons ci ratio: 1.018744e-02	ci left: 2.023268e-01	ci right 2.044003e-01	k: 117950	n:580000
KS ci ratio: 9.263973e-02	ci left: 2.934976e-03	ci right 3.221747e-03	k: 1784	n:580000
SULT1C4   580000 perm   230 sec   (2525 perm/sec)   p_kst 3.075862e-03   p_cons 2.033621e-01   p_joint 1.600000e-03

Joint ci ratio: 1.270121e-01	ci left: 1.509469e-03	ci right 1.715813e-03	k: 950	n:590000
Cons ci ratio: 1.010167e-02	ci left: 2.023058e-01	ci right 2.043615e-01	k: 119966	n:590000
KS ci ratio: 9.169378e-02	ci left: 2.946498e-03	ci right 3.231297e-03	k: 1821	n:590000
SULT1C4   590000 perm   236 sec   (2502 perm/sec)   p_kst 3.086441e-03   p_cons 2.033322e-01   p_joint 1.610169e-03

Joint ci ratio: 1.257617e-01	ci left: 1.514977e-03	ci right 1.719884e-03	k: 969	n:600000
Cons ci ratio: 1.001509e-02	ci left: 2.023804e-01	ci right 2.044191e-01	k: 122039	n:600000
KS ci ratio: 9.087436e-02	ci left: 2.951134e-03	ci right 3.233697e-03	k: 1854	n:600000
SULT1C4   600000 perm   242 sec   (2479 perm/sec)   p_kst 3.090000e-03   p_cons 2.033983e-01   p_joint 1.615000e-03

Joint ci ratio: 1.246739e-01	ci left: 1.517137e-03	ci right 1.720430e-03	k: 986	n:610000
Cons ci ratio: 9.929648e-03	ci left: 2.024870e-01	ci right 2.045093e-01	k: 124133	n:610000
KS ci ratio: 9.014839e-02	ci left: 2.950822e-03	ci right 3.230979e-03	k: 1884	n:610000
SULT1C4   610000 perm   248 sec   (2457 perm/sec)   p_kst 3.088525e-03   p_cons 2.034967e-01   p_joint 1.616393e-03

Joint ci ratio: 1.235522e-01	ci left: 1.520798e-03	ci right 1.722614e-03	k: 1004	n:620000
Cons ci ratio: 9.847137e-03	ci left: 2.025645e-01	ci right 2.045706e-01	k: 126211	n:620000
KS ci ratio: 8.936935e-02	ci left: 2.955259e-03	ci right 3.233287e-03	k: 1917	n:620000
SULT1C4   620000 perm   255 sec   (2435 perm/sec)   p_kst 3.091935e-03   p_cons 2.035661e-01   p_joint 1.619355e-03

Joint ci ratio: 1.227007e-01	ci left: 1.518196e-03	ci right 1.718177e-03	k: 1018	n:630000
Cons ci ratio: 9.767558e-03	ci left: 2.026094e-01	ci right 2.045997e-01	k: 128270	n:630000
KS ci ratio: 8.865577e-02	ci left: 2.956462e-03	ci right 3.232266e-03	k: 1948	n:630000
SULT1C4   630000 perm   261 sec   (2414 perm/sec)   p_kst 3.092063e-03   p_cons 2.036032e-01   p_joint 1.615873e-03

Joint ci ratio: 1.215723e-01	ci left: 1.523255e-03	ci right 1.721925e-03	k: 1037	n:640000
Cons ci ratio: 9.691791e-03	ci left: 2.025891e-01	ci right 2.045636e-01	k: 130288	n:640000
KS ci ratio: 8.793673e-02	ci left: 2.959163e-03	ci right 3.232865e-03	k: 1980	n:640000
SULT1C4   640000 perm   268 sec   (2393 perm/sec)   p_kst 3.093750e-03   p_cons 2.035750e-01   p_joint 1.620313e-03

Joint ci ratio: 1.205887e-01	ci left: 1.525182e-03	ci right 1.722379e-03	k: 1054	n:650000
Cons ci ratio: 9.620819e-03	ci left: 2.024665e-01	ci right 2.044253e-01	k: 132239	n:650000
KS ci ratio: 8.736561e-02	ci left: 2.952760e-03	ci right 3.224006e-03	k: 2006	n:650000
SULT1C4   650000 perm   274 sec   (2372 perm/sec)   p_kst 3.086154e-03   p_cons 2.034446e-01   p_joint 1.621538e-03

Joint ci ratio: 1.200218e-01	ci left: 1.516769e-03	ci right 1.711890e-03	k: 1064	n:660000
Cons ci ratio: 9.545758e-03	ci left: 2.025383e-01	ci right 2.044825e-01	k: 134316	n:660000
KS ci ratio: 8.689127e-02	ci left: 2.940628e-03	ci right 3.209218e-03	k: 2028	n:660000
SULT1C4   660000 perm   281 sec   (2351 perm/sec)   p_kst 3.072727e-03   p_cons 2.035091e-01   p_joint 1.612121e-03

Joint ci ratio: 1.192408e-01	ci left: 1.514400e-03	ci right 1.707860e-03	k: 1078	n:670000
Cons ci ratio: 9.476876e-03	ci left: 2.024561e-01	ci right 2.043853e-01	k: 136291	n:670000
KS ci ratio: 8.625598e-02	ci left: 2.940544e-03	ci right 3.207065e-03	k: 2058	n:670000
SULT1C4   670000 perm   287 sec   (2332 perm/sec)   p_kst 3.071642e-03   p_cons 2.034194e-01   p_joint 1.608955e-03

Joint ci ratio: 1.185836e-01	ci left: 1.509252e-03	ci right 1.700917e-03	k: 1090	n:680000
Cons ci ratio: 9.408694e-03	ci left: 2.024027e-01	ci right 2.043175e-01	k: 138284	n:680000
KS ci ratio: 8.569618e-02	ci left: 2.936153e-03	ci right 3.200462e-03	k: 2085	n:680000
SULT1C4   680000 perm   294 sec   (2312 perm/sec)   p_kst 3.066176e-03   p_cons 2.033588e-01   p_joint 1.602941e-03

Joint ci ratio: 1.177235e-01	ci left: 1.509882e-03	ci right 1.700139e-03	k: 1106	n:690000
Cons ci ratio: 9.338955e-03	ci left: 2.024551e-01	ci right 2.043561e-01	k: 140349	n:690000
KS ci ratio: 8.520782e-02	ci left: 2.927639e-03	ci right 3.189604e-03	k: 2109	n:690000
SULT1C4   690000 perm   301 sec   (2292 perm/sec)   p_kst 3.056522e-03   p_cons 2.034043e-01   p_joint 1.602899e-03

Joint ci ratio: 1.167778e-01	ci left: 1.513272e-03	ci right 1.702319e-03	k: 1124	n:700000
Cons ci ratio: 9.269518e-03	ci left: 2.025488e-01	ci right 2.044365e-01	k: 142444	n:700000
KS ci ratio: 8.452930e-02	ci left: 2.933356e-03	ci right 3.193640e-03	k: 2143	n:700000
SULT1C4   700000 perm   308 sec   (2273 perm/sec)   p_kst 3.061429e-03   p_cons 2.034914e-01   p_joint 1.605714e-03

Joint ci ratio: 1.162627e-01	ci left: 1.505632e-03	ci right 1.692838e-03	k: 1134	n:710000
Cons ci ratio: 9.203885e-03	ci left: 2.025598e-01	ci right 2.044342e-01	k: 144482	n:710000
KS ci ratio: 8.409943e-02	ci left: 2.922373e-03	ci right 3.180299e-03	k: 2165	n:710000
SULT1C4   710000 perm   315 sec   (2254 perm/sec)   p_kst 3.049296e-03   p_cons 2.034958e-01   p_joint 1.597183e-03

Joint ci ratio: 1.157544e-01	ci left: 1.498206e-03	ci right 1.683619e-03	k: 1144	n:720000
Cons ci ratio: 9.143780e-03	ci left: 2.024236e-01	ci right 2.042844e-01	k: 146414	n:720000
KS ci ratio: 8.363773e-02	ci left: 2.914419e-03	ci right 3.170161e-03	k: 2189	n:720000
SULT1C4   720000 perm   322 sec   (2235 perm/sec)   p_kst 3.040278e-03   p_cons 2.033528e-01   p_joint 1.588889e-03

Joint ci ratio: 1.147562e-01	ci left: 1.504290e-03	ci right 1.688742e-03	k: 1164	n:730000
Cons ci ratio: 9.079498e-03	ci left: 2.024812e-01	ci right 2.043294e-01	k: 148485	n:730000
KS ci ratio: 8.295834e-02	ci left: 2.922783e-03	ci right 3.177076e-03	k: 2225	n:730000
SULT1C4   730000 perm   330 sec   (2215 perm/sec)   p_kst 3.047945e-03   p_cons 2.034041e-01   p_joint 1.594521e-03

Joint ci ratio: 1.141700e-01	ci left: 1.499714e-03	ci right 1.682602e-03	k: 1176	n:740000
Cons ci ratio: 9.019786e-03	ci left: 2.024213e-01	ci right 2.042567e-01	k: 150470	n:740000
KS ci ratio: 8.231349e-02	ci left: 2.929607e-03	ci right 3.182417e-03	k: 2260	n:740000
SULT1C4   740000 perm   337 sec   (2195 perm/sec)   p_kst 3.054054e-03   p_cons 2.033378e-01   p_joint 1.589189e-03

Joint ci ratio: 1.134494e-01	ci left: 1.499148e-03	ci right 1.680736e-03	k: 1191	n:750000
Cons ci ratio: 8.958250e-03	ci left: 2.024709e-01	ci right 2.042941e-01	k: 152536	n:750000
KS ci ratio: 8.173703e-02	ci left: 2.932337e-03	ci right 3.183526e-03	k: 2292	n:750000
SULT1C4   750000 perm   344 sec   (2177 perm/sec)   p_kst 3.056000e-03   p_cons 2.033813e-01   p_joint 1.588000e-03

Joint ci ratio: 1.126956e-01	ci left: 1.499880e-03	ci right 1.680269e-03	k: 1207	n:760000
Cons ci ratio: 8.899041e-03	ci left: 2.024797e-01	ci right 2.042909e-01	k: 154572	n:760000
KS ci ratio: 8.122509e-02	ci left: 2.931134e-03	ci right 3.180573e-03	k: 2321	n:760000
SULT1C4   760000 perm   352 sec   (2160 perm/sec)   p_kst 3.053947e-03   p_cons 2.033842e-01   p_joint 1.588158e-03

Joint ci ratio: 1.116827e-01	ci left: 1.508171e-03	ci right 1.687820e-03	k: 1229	n:770000
Cons ci ratio: 8.840282e-03	ci left: 2.025144e-01	ci right 2.043139e-01	k: 156628	n:770000
KS ci ratio: 8.049972e-02	ci left: 2.946510e-03	ci right 3.194914e-03	k: 2363	n:770000
SULT1C4   770000 perm   359 sec   (2143 perm/sec)   p_kst 3.068831e-03   p_cons 2.034130e-01   p_joint 1.596104e-03

Joint ci ratio: 1.110974e-01	ci left: 1.505038e-03	ci right 1.683312e-03	k: 1242	n:780000
Cons ci ratio: 8.783227e-03	ci left: 2.025276e-01	ci right 2.043156e-01	k: 158668	n:780000
KS ci ratio: 8.001054e-02	ci left: 2.945168e-03	ci right 3.191879e-03	k: 2392	n:780000
SULT1C4   780000 perm   367 sec   (2124 perm/sec)   p_kst 3.066667e-03   p_cons 2.034205e-01   p_joint 1.592308e-03

Joint ci ratio: 1.103453e-01	ci left: 1.506910e-03	ci right 1.684119e-03	k: 1259	n:790000
Cons ci ratio: 8.727672e-03	ci left: 2.025255e-01	ci right 2.043020e-01	k: 160696	n:790000
KS ci ratio: 7.930061e-02	ci left: 2.961234e-03	ci right 3.206989e-03	k: 2435	n:790000
SULT1C4   790000 perm   375 sec   (2108 perm/sec)   p_kst 3.082278e-03   p_cons 2.034127e-01   p_joint 1.593671e-03

Joint ci ratio: 1.095224e-01	ci left: 1.511170e-03	ci right 1.687470e-03	k: 1278	n:800000
Cons ci ratio: 8.674262e-03	ci left: 2.024822e-01	ci right 2.042475e-01	k: 162691	n:800000
KS ci ratio: 7.881681e-02	ci left: 2.960978e-03	ci right 3.205142e-03	k: 2465	n:800000
SULT1C4   800000 perm   382 sec   (2092 perm/sec)   p_kst 3.081250e-03   p_cons 2.033638e-01   p_joint 1.597500e-03

Joint ci ratio: 1.085921e-01	ci left: 1.518934e-03	ci right 1.694538e-03	k: 1300	n:810000
Cons ci ratio: 8.618733e-03	ci left: 2.025559e-01	ci right 2.043104e-01	k: 164780	n:810000
KS ci ratio: 7.827887e-02	ci left: 2.965573e-03	ci right 3.208372e-03	k: 2499	n:810000
SULT1C4   810000 perm   390 sec   (2076 perm/sec)   p_kst 3.085185e-03   p_cons 2.034321e-01   p_joint 1.604938e-03

Joint ci ratio: 1.078484e-01	ci left: 1.521768e-03	ci right 1.696418e-03	k: 1318	n:820000
Cons ci ratio: 8.567383e-03	ci left: 2.025097e-01	ci right 2.042534e-01	k: 166772	n:820000
KS ci ratio: 7.769031e-02	ci left: 2.974846e-03	ci right 3.216490e-03	k: 2537	n:820000
SULT1C4   820000 perm   398 sec   (2060 perm/sec)   p_kst 3.093902e-03   p_cons 2.033805e-01   p_joint 1.607317e-03

Joint ci ratio: 1.071199e-01	ci left: 1.524537e-03	ci right 1.698248e-03	k: 1336	n:830000
Cons ci ratio: 8.514281e-03	ci left: 2.025657e-01	ci right 2.042990e-01	k: 168848	n:830000
KS ci ratio: 7.709982e-02	ci left: 2.985084e-03	ci right 3.225634e-03	k: 2576	n:830000
SULT1C4   830000 perm   406 sec   (2044 perm/sec)   p_kst 3.103614e-03   p_cons 2.034313e-01   p_joint 1.609639e-03

Joint ci ratio: 1.064059e-01	ci left: 1.527244e-03	ci right 1.700031e-03	k: 1354	n:840000
Cons ci ratio: 8.463801e-03	ci left: 2.025575e-01	ci right 2.042803e-01	k: 170871	n:840000
KS ci ratio: 7.674361e-02	ci left: 2.977569e-03	ci right 3.216355e-03	k: 2600	n:840000
SULT1C4   840000 perm   414 sec   (2029 perm/sec)   p_kst 3.095238e-03   p_cons 2.034179e-01   p_joint 1.611905e-03

Joint ci ratio: 1.057445e-01	ci left: 1.528746e-03	ci right 1.700561e-03	k: 1371	n:850000
Cons ci ratio: 8.413017e-03	ci left: 2.025952e-01	ci right 2.043080e-01	k: 172933	n:850000
KS ci ratio: 7.630486e-02	ci left: 2.977157e-03	ci right 3.214485e-03	k: 2630	n:850000
SULT1C4   850000 perm   422 sec   (2013 perm/sec)   p_kst 3.094118e-03   p_cons 2.034506e-01   p_joint 1.612941e-03

Joint ci ratio: 1.052093e-01	ci left: 1.526819e-03	ci right 1.697496e-03	k: 1385	n:860000
Cons ci ratio: 8.361877e-03	ci left: 2.026809e-01	ci right 2.043839e-01	k: 175037	n:860000
KS ci ratio: 7.584497e-02	ci left: 2.979040e-03	ci right 3.215024e-03	k: 2662	n:860000
SULT1C4   860000 perm   430 sec   (1999 perm/sec)   p_kst 3.095349e-03   p_cons 2.035314e-01   p_joint 1.610465e-03

Joint ci ratio: 1.046072e-01	ci left: 1.527178e-03	ci right 1.696858e-03	k: 1401	n:870000
Cons ci ratio: 8.312542e-03	ci left: 2.027302e-01	ci right 2.044235e-01	k: 177111	n:870000
KS ci ratio: 7.549171e-02	ci left: 2.972990e-03	ci right 3.207349e-03	k: 2687	n:870000
SULT1C4   870000 perm   439 sec   (1984 perm/sec)   p_kst 3.088506e-03   p_cons 2.035759e-01   p_joint 1.610345e-03

Joint ci ratio: 1.038322e-01	ci left: 1.533066e-03	ci right 1.702060e-03	k: 1422	n:880000
Cons ci ratio: 8.265373e-03	ci left: 2.027273e-01	ci right 2.044110e-01	k: 179140	n:880000
KS ci ratio: 7.500480e-02	ci left: 2.978231e-03	ci right 3.211423e-03	k: 2722	n:880000
SULT1C4   880000 perm   447 sec   (1969 perm/sec)   p_kst 3.093182e-03   p_cons 2.035682e-01   p_joint 1.615909e-03

Joint ci ratio: 1.033613e-01	ci left: 1.530068e-03	ci right 1.697921e-03	k: 1435	n:890000
Cons ci ratio: 8.218371e-03	ci left: 2.027492e-01	ci right 2.044235e-01	k: 181191	n:890000
KS ci ratio: 7.460864e-02	ci left: 2.976742e-03	ci right 3.208533e-03	k: 2751	n:890000
SULT1C4   890000 perm   455 sec   (1954 perm/sec)   p_kst 3.091011e-03   p_cons 2.035854e-01   p_joint 1.612360e-03

Joint ci ratio: 1.026134e-01	ci left: 1.535800e-03	ci right 1.702989e-03	k: 1456	n:900000
Cons ci ratio: 8.173058e-03	ci left: 2.027352e-01	ci right 2.044000e-01	k: 183210	n:900000
KS ci ratio: 7.404529e-02	ci left: 2.989467e-03	ci right 3.220416e-03	k: 2793	n:900000
SULT1C4   900000 perm   464 sec   (1940 perm/sec)   p_kst 3.103333e-03   p_cons 2.035667e-01   p_joint 1.617778e-03

Joint ci ratio: 1.019161e-01	ci left: 1.540339e-03	ci right 1.706815e-03	k: 1476	n:910000
Cons ci ratio: 8.129892e-03	ci left: 2.026655e-01	ci right 2.043210e-01	k: 185178	n:910000
KS ci ratio: 7.358567e-02	ci left: 2.994368e-03	ci right 3.224198e-03	k: 2828	n:910000
SULT1C4   910000 perm   473 sec   (1925 perm/sec)   p_kst 3.107692e-03   p_cons 2.034923e-01   p_joint 1.621978e-03

Joint ci ratio: 1.015732e-01	ci left: 1.534189e-03	ci right 1.699409e-03	k: 1486	n:920000
Cons ci ratio: 8.086860e-03	ci left: 2.026191e-01	ci right 2.042654e-01	k: 187166	n:920000
KS ci ratio: 7.331447e-02	ci left: 2.984227e-03	ci right 3.212398e-03	k: 2849	n:920000
SULT1C4   920000 perm   481 sec   (1911 perm/sec)   p_kst 3.096739e-03   p_cons 2.034413e-01   p_joint 1.615217e-03

Joint ci ratio: 1.010648e-01	ci left: 1.533413e-03	ci right 1.697673e-03	k: 1501	n:930000
Cons ci ratio: 8.043276e-03	ci left: 2.026231e-01	ci right 2.042605e-01	k: 189200	n:930000
KS ci ratio: 7.293166e-02	ci left: 2.983806e-03	ci right 3.210704e-03	k: 2879	n:930000
SULT1C4   930000 perm   490 sec   (1898 perm/sec)   p_kst 3.095699e-03   p_cons 2.034409e-01   p_joint 1.613978e-03

Joint ci ratio: 1.006637e-01	ci left: 1.529544e-03	ci right 1.692701e-03	k: 1513	n:940000
Cons ci ratio: 8.001151e-03	ci left: 2.025962e-01	ci right 2.042248e-01	k: 191205	n:940000
KS ci ratio: 7.257981e-02	ci left: 2.981309e-03	ci right 3.206877e-03	k: 2907	n:940000
SULT1C4   940000 perm   499 sec   (1885 perm/sec)   p_kst 3.092553e-03   p_cons 2.034096e-01   p_joint 1.609574e-03

Joint ci ratio: 9.993989e-02	ci left: 1.536020e-03	ci right 1.698621e-03	k: 1535	n:950000
Cons ci ratio: 7.958750e-03	ci left: 2.026078e-01	ci right 2.042277e-01	k: 193246	n:950000
KS ci ratio: 7.217139e-02	ci left: 2.984035e-03	ci right 3.208485e-03	k: 2940	n:950000
SULT1C4   950000 perm   508 sec   (1871 perm/sec)   p_kst 3.094737e-03   p_cons 2.034168e-01   p_joint 1.615789e-03

Outputting figure to mutsig2_images.part000000000169/SULT1C4.3_937_950000_0.0030947_0.20342_0.0016158.png
                gene_name: SULT1C4
               theta_stop: 0.100 
                    nperm: 950000 
                     p_ks: 0.0031 
        ci_ks_bounds_left: 0.0030 
       ci_ks_bounds_right: 0.0032 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.0016 
     ci_joint_bounds_left: 0.0015 
    ci_joint_bounds_right: 0.0017 

Current progress: 52 percent done.
SULT6B1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.068535e-02	ci left: 7.739786e-01	ci right 7.902567e-01	k: 7822	n:10000
Cons ci ratio: 6.831423e-02	ci left: 2.391649e-01	ci right 2.561823e-01	k: 2476	n:10000
KS ci ratio: 1.637241e-02	ci left: 8.443782e-01	ci right 8.584164e-01	k: 8515	n:10000
SULT6B1   10000 perm   2 sec   (6360 perm/sec)   p_kst 8.515000e-01   p_cons 2.476000e-01   p_joint 7.822000e-01

Outputting figure to mutsig2_images.part000000000169/SULT6B1.3_826_10000_0.8515_0.2476_0.7822.png
                gene_name: SULT6B1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 54 percent done.
SUPT3H
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.788726e-02	ci left: 1.941685e-01	ci right 2.100054e-01	k: 2020	n:10000
Cons ci ratio: 2.776432e-02	ci left: 6.565580e-01	ci right 6.751452e-01	k: 6659	n:10000
KS ci ratio: 1.191911e-01	ci left: 9.175384e-02	ci right 1.034818e-01	k: 975	n:10000
SUPT3H   10000 perm   2 sec   (6328 perm/sec)   p_kst 9.750000e-02   p_cons 6.659000e-01   p_joint 2.020000e-01

Joint ci ratio: 5.426872e-02	ci left: 2.012544e-01	ci right 2.125310e-01	k: 4137	n:20000
Cons ci ratio: 1.947007e-02	ci left: 6.630320e-01	ci right 6.761187e-01	k: 13392	n:20000
KS ci ratio: 8.237831e-02	ci left: 9.749509e-02	ci right 1.059211e-01	k: 2033	n:20000
SUPT3H   20000 perm   4 sec   (5589 perm/sec)   p_kst 1.016500e-01   p_cons 6.696000e-01   p_joint 2.068500e-01

Outputting figure to mutsig2_images.part000000000169/SUPT3H.3_1136_20000_0.10165_0.6696_0.20685.png
                gene_name: SUPT3H
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 56 percent done.
SUPV3L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.646289e-02	ci left: 8.429516e-01	ci right 8.570439e-01	k: 8501	n:10000
KS ci ratio: 2.031471e-02	ci left: 7.801599e-01	ci right 7.962719e-01	k: 7883	n:10000
SUPV3L1   10000 perm   2 sec   (5822 perm/sec)   p_kst 7.883000e-01   p_cons 8.501000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/SUPV3L1.3_2421_10000_0.7883_0.8501_1.png
                gene_name: SUPV3L1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
SUSD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.970690e-02	ci left: 4.836541e-01	ci right 5.033497e-01	k: 4935	n:10000
Cons ci ratio: 6.489987e-02	ci left: 2.585460e-01	ci right 2.759898e-01	k: 2672	n:10000
KS ci ratio: 3.157826e-02	ci left: 5.967448e-01	ci right 6.159932e-01	k: 6064	n:10000
SUSD5   10000 perm   2 sec   (6037 perm/sec)   p_kst 6.064000e-01   p_cons 2.672000e-01   p_joint 4.935000e-01

Outputting figure to mutsig2_images.part000000000169/SUSD5.3_1910_10000_0.6064_0.2672_0.4935.png
                gene_name: SUSD5
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 59 percent done.
SUV39H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.918611e-02	ci left: 1.546314e-01	ci right 1.691662e-01	k: 1618	n:10000
Cons ci ratio: 6.611438e-02	ci left: 2.514238e-01	ci right 2.687162e-01	k: 2600	n:10000
KS ci ratio: 9.627528e-02	ci left: 1.353117e-01	ci right 1.490975e-01	k: 1421	n:10000
SUV39H2   10000 perm   2 sec   (6178 perm/sec)   p_kst 1.421000e-01   p_cons 2.600000e-01   p_joint 1.618000e-01

Outputting figure to mutsig2_images.part000000000169/SUV39H2.3_1069_10000_0.1421_0.26_0.1618.png
                gene_name: SUV39H2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.17 

Current progress: 61 percent done.
SUZ12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.172700e-01	ci left: 9.457666e-02	ci right 1.064572e-01	k: 1004	n:10000
Cons ci ratio: 1.030047e-01	ci left: 1.199465e-01	ci right 1.330719e-01	k: 1264	n:10000
KS ci ratio: 8.383558e-02	ci left: 1.718257e-01	ci right 1.869615e-01	k: 1793	n:10000
SUZ12   10000 perm   2 sec   (5819 perm/sec)   p_kst 1.793000e-01   p_cons 1.264000e-01   p_joint 1.004000e-01

Joint ci ratio: 7.773546e-02	ci left: 1.083981e-01	ci right 1.172148e-01	k: 2255	n:20000
Cons ci ratio: 7.367235e-02	ci left: 1.194130e-01	ci right 1.285966e-01	k: 2479	n:20000
KS ci ratio: 5.857647e-02	ci left: 1.775637e-01	ci right 1.883286e-01	k: 3658	n:20000
SUZ12   20000 perm   4 sec   (5182 perm/sec)   p_kst 1.829000e-01   p_cons 1.239500e-01   p_joint 1.127500e-01

Outputting figure to mutsig2_images.part000000000169/SUZ12.3_2284_20000_0.1829_0.12395_0.11275.png
                gene_name: SUZ12
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 62 percent done.
SVOPL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.371229e-02	ci left: 7.233032e-01	ci right 7.407614e-01	k: 7321	n:10000
KS ci ratio: 2.444450e-02	ci left: 7.110866e-01	ci right 7.287851e-01	k: 7200	n:10000
SVOPL   10000 perm   2 sec   (6553 perm/sec)   p_kst 7.200000e-01   p_cons 7.321000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/SVOPL.3_1539_10000_0.72_0.7321_1.png
                gene_name: SVOPL
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
STX11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.144074e-02	ci left: 2.230647e-01	ci right 2.396920e-01	k: 2313	n:10000
Cons ci ratio: 1.274646e-01	ci left: 8.086735e-02	ci right 9.197496e-02	k: 863	n:10000
KS ci ratio: 1.757246e-01	ci left: 4.322176e-02	ci right 5.164440e-02	k: 473	n:10000
STX11   10000 perm   1 sec   (6871 perm/sec)   p_kst 4.730000e-02   p_cons 8.630000e-02   p_joint 2.313000e-01

Joint ci ratio: 5.028353e-02	ci left: 2.271553e-01	ci right 2.389224e-01	k: 4660	n:20000
Cons ci ratio: 9.111760e-02	ci left: 8.082777e-02	ci right 8.859346e-02	k: 1693	n:20000
KS ci ratio: 1.248824e-01	ci left: 4.401091e-02	ci right 4.992170e-02	k: 938	n:20000
STX11   20000 perm   3 sec   (6066 perm/sec)   p_kst 4.690000e-02   p_cons 8.465000e-02   p_joint 2.330000e-01

Joint ci ratio: 2.277933e-02	ci left: 4.910594e-01	ci right 5.024079e-01	k: 14902	n:30000
Cons ci ratio: 7.454203e-02	ci left: 8.124526e-02	ci right 8.756883e-02	k: 2531	n:30000
KS ci ratio: 1.004605e-01	ci left: 4.586852e-02	ci right 5.075276e-02	k: 1448	n:30000
STX11   30000 perm   5 sec   (5778 perm/sec)   p_kst 4.826667e-02   p_cons 8.436667e-02   p_joint 4.967333e-01

Joint ci ratio: 1.016479e-02	ci left: 7.840116e-01	ci right 7.920466e-01	k: 31522	n:40000
Cons ci ratio: 6.504066e-02	ci left: 8.053590e-02	ci right 8.597478e-02	k: 3329	n:40000
KS ci ratio: 8.643903e-02	ci left: 4.678240e-02	ci right 5.103339e-02	k: 1955	n:40000
STX11   40000 perm   7 sec   (5557 perm/sec)   p_kst 4.887500e-02   p_cons 8.322500e-02   p_joint 7.880500e-01

Outputting figure to mutsig2_images.part000000000169/STX11.2_868_40000_0.048875_0.083225_0.78805.png
                gene_name: STX11
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 66 percent done.
STX19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.497168e-03	ci left: 9.509609e-01	ci right 9.591714e-01	k: 9552	n:10000
Cons ci ratio: 1.847290e-02	ci left: 8.106001e-01	ci right 8.258141e-01	k: 8183	n:10000
KS ci ratio: 2.594231e-02	ci left: 6.862735e-01	ci right 7.044125e-01	k: 6954	n:10000
STX19   10000 perm   2 sec   (6626 perm/sec)   p_kst 6.954000e-01   p_cons 8.183000e-01   p_joint 9.552000e-01

Outputting figure to mutsig2_images.part000000000169/STX19.2_889_10000_0.6954_0.8183_0.9552.png
                gene_name: STX19
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 67 percent done.
STX1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.743772e-01	ci left: 4.389243e-02	ci right 5.237330e-02	k: 480	n:10000
Cons ci ratio: 2.031327e-01	ci left: 3.224430e-02	ci right 3.962922e-02	k: 358	n:10000
KS ci ratio: 2.783921e-02	ci left: 6.553502e-01	ci right 6.739538e-01	k: 6647	n:10000
STX1A   10000 perm   1 sec   (6932 perm/sec)   p_kst 6.647000e-01   p_cons 3.580000e-02   p_joint 4.800000e-02

Joint ci ratio: 1.120129e-01	ci left: 5.445922e-02	ci right 6.097011e-02	k: 1153	n:20000
Cons ci ratio: 1.427146e-01	ci left: 3.375046e-02	ci right 3.898544e-02	k: 726	n:20000
KS ci ratio: 1.963308e-02	ci left: 6.593143e-01	ci right 6.724375e-01	k: 13318	n:20000
STX1A   20000 perm   3 sec   (6109 perm/sec)   p_kst 6.659000e-01   p_cons 3.630000e-02   p_joint 5.765000e-02

Joint ci ratio: 9.251276e-02	ci left: 5.384851e-02	ci right 5.910446e-02	k: 1693	n:30000
Cons ci ratio: 1.176796e-01	ci left: 3.356407e-02	ci right 3.779314e-02	k: 1069	n:30000
KS ci ratio: 1.601974e-02	ci left: 6.608312e-01	ci right 6.715366e-01	k: 19986	n:30000
STX1A   30000 perm   5 sec   (5836 perm/sec)   p_kst 6.662000e-01   p_cons 3.563333e-02   p_joint 5.643333e-02

Joint ci ratio: 8.757475e-02	ci left: 4.560728e-02	ci right 4.980870e-02	k: 1907	n:40000
Cons ci ratio: 1.017906e-01	ci left: 3.392739e-02	ci right 3.759041e-02	k: 1429	n:40000
KS ci ratio: 1.380814e-02	ci left: 6.636614e-01	ci right 6.729141e-01	k: 26732	n:40000
STX1A   40000 perm   7 sec   (5639 perm/sec)   p_kst 6.683000e-01   p_cons 3.572500e-02   p_joint 4.767500e-02

Joint ci ratio: 9.006924e-02	ci left: 3.485364e-02	ci right 3.816045e-02	k: 1824	n:50000
Cons ci ratio: 9.006924e-02	ci left: 3.485364e-02	ci right 3.816045e-02	k: 1824	n:50000
KS ci ratio: 1.228529e-02	ci left: 6.665007e-01	ci right 6.747595e-01	k: 33532	n:50000
STX1A   50000 perm   9 sec   (5475 perm/sec)   p_kst 6.706400e-01   p_cons 3.648000e-02   p_joint 3.648000e-02

Outputting figure to mutsig2_images.part000000000169/STX1A.2_907_50000_0.67064_0.03648_0.03648.png
                gene_name: STX1A
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 69 percent done.
STX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.754394e-02	ci left: 3.949592e-01	ci right 4.142964e-01	k: 4046	n:10000
Cons ci ratio: 5.908968e-02	ci left: 2.964797e-01	ci right 3.146337e-01	k: 3055	n:10000
KS ci ratio: 3.100581e-02	ci left: 6.054810e-01	ci right 6.246520e-01	k: 6151	n:10000
STX4   10000 perm   1 sec   (6732 perm/sec)   p_kst 6.151000e-01   p_cons 3.055000e-01   p_joint 4.046000e-01

Outputting figure to mutsig2_images.part000000000169/STX4.2_934_10000_0.6151_0.3055_0.4046.png
                gene_name: STX4
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 70 percent done.
STXBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
Cons ci ratio: 3.634162e-01	ci left: 9.412543e-03	ci right 1.367914e-02	k: 114	n:10000
KS ci ratio: 3.060783e-02	ci left: 6.116083e-01	ci right 6.307211e-01	k: 6212	n:10000
STXBP2   10000 perm   2 sec   (6154 perm/sec)   p_kst 6.212000e-01   p_cons 1.140000e-02   p_joint 1.060000e-02

Joint ci ratio: 2.520380e-01	ci left: 1.044346e-02	ci right 1.350089e-02	k: 238	n:20000
Cons ci ratio: 2.541997e-01	ci left: 1.025603e-02	ci right 1.328841e-02	k: 234	n:20000
KS ci ratio: 2.157056e-02	ci left: 6.160403e-01	ci right 6.295240e-01	k: 12456	n:20000
STXBP2   20000 perm   4 sec   (5496 perm/sec)   p_kst 6.228000e-01   p_cons 1.170000e-02   p_joint 1.190000e-02

Joint ci ratio: 2.107542e-01	ci left: 1.019794e-02	ci right 1.263140e-02	k: 341	n:30000
Cons ci ratio: 2.152558e-01	ci left: 9.755930e-03	ci right 1.214020e-02	k: 327	n:30000
KS ci ratio: 1.774653e-02	ci left: 6.137106e-01	ci right 6.247329e-01	k: 18577	n:30000
STXBP2   30000 perm   6 sec   (5160 perm/sec)   p_kst 6.192333e-01   p_cons 1.090000e-02   p_joint 1.136667e-02

Joint ci ratio: 1.914221e-01	ci left: 9.381360e-03	ci right 1.139067e-02	k: 414	n:40000
Cons ci ratio: 1.877974e-01	ci left: 9.762548e-03	ci right 1.180941e-02	k: 430	n:40000
KS ci ratio: 1.538238e-02	ci left: 6.140445e-01	ci right 6.235883e-01	k: 24753	n:40000
STXBP2   40000 perm   8 sec   (4955 perm/sec)   p_kst 6.188250e-01   p_cons 1.075000e-02   p_joint 1.035000e-02

Joint ci ratio: 1.698539e-01	ci left: 9.644224e-03	ci right 1.145328e-02	k: 526	n:50000
Cons ci ratio: 1.659211e-01	ci left: 1.012342e-02	ci right 1.197401e-02	k: 551	n:50000
KS ci ratio: 1.375164e-02	ci left: 6.147866e-01	ci right 6.233195e-01	k: 30953	n:50000
STXBP2   50000 perm   10 sec   (4808 perm/sec)   p_kst 6.190600e-01   p_cons 1.102000e-02   p_joint 1.052000e-02

Joint ci ratio: 1.571272e-01	ci left: 9.459494e-03	ci right 1.108840e-02	k: 615	n:60000
Cons ci ratio: 1.515111e-01	ci left: 1.019685e-02	ci right 1.188428e-02	k: 661	n:60000
KS ci ratio: 1.256309e-02	ci left: 6.147996e-01	ci right 6.225889e-01	k: 37122	n:60000
STXBP2   60000 perm   13 sec   (4687 perm/sec)   p_kst 6.187000e-01   p_cons 1.101667e-02   p_joint 1.025000e-02

Joint ci ratio: 1.501506e-01	ci left: 8.918411e-03	ci right 1.037981e-02	k: 674	n:70000
Cons ci ratio: 1.403947e-01	ci left: 1.024051e-02	ci right 1.180042e-02	k: 770	n:70000
KS ci ratio: 1.162732e-02	ci left: 6.152473e-01	ci right 6.224571e-01	k: 43320	n:70000
STXBP2   70000 perm   15 sec   (4604 perm/sec)   p_kst 6.188571e-01   p_cons 1.100000e-02   p_joint 9.628571e-03

Joint ci ratio: 1.364405e-01	ci left: 9.515288e-03	ci right 1.092057e-02	k: 816	n:80000
Cons ci ratio: 1.306650e-01	ci left: 1.039761e-02	ci right 1.186317e-02	k: 889	n:80000
KS ci ratio: 1.086646e-02	ci left: 6.159123e-01	ci right 6.226541e-01	k: 49543	n:80000
STXBP2   80000 perm   18 sec   (4526 perm/sec)   p_kst 6.192875e-01   p_cons 1.111250e-02   p_joint 1.020000e-02

Joint ci ratio: 1.247933e-01	ci left: 1.016727e-02	ci right 1.153120e-02	k: 975	n:90000
Cons ci ratio: 1.238348e-01	ci left: 1.032881e-02	ci right 1.170298e-02	k: 990	n:90000
KS ci ratio: 1.025561e-02	ci left: 6.156176e-01	ci right 6.219747e-01	k: 55692	n:90000
STXBP2   90000 perm   20 sec   (4458 perm/sec)   p_kst 6.188000e-01   p_cons 1.100000e-02   p_joint 1.083333e-02

Joint ci ratio: 1.220514e-01	ci left: 9.586476e-03	ci right 1.084218e-02	k: 1020	n:100000
Cons ci ratio: 1.168970e-01	ci left: 1.046956e-02	ci right 1.177903e-02	k: 1111	n:100000
KS ci ratio: 9.740059e-03	ci left: 6.152606e-01	ci right 6.212926e-01	k: 61828	n:100000
STXBP2   100000 perm   23 sec   (4392 perm/sec)   p_kst 6.182800e-01   p_cons 1.111000e-02   p_joint 1.020000e-02

Joint ci ratio: 1.158566e-01	ci left: 9.702909e-03	ci right 1.090494e-02	k: 1132	n:110000
Cons ci ratio: 1.111907e-01	ci left: 1.055111e-02	ci right 1.180213e-02	k: 1228	n:110000
KS ci ratio: 9.296773e-03	ci left: 6.148935e-01	ci right 6.206458e-01	k: 67955	n:110000
STXBP2   110000 perm   25 sec   (4320 perm/sec)   p_kst 6.177727e-01   p_cons 1.116364e-02   p_joint 1.029091e-02

Joint ci ratio: 1.073401e-01	ci left: 1.040131e-02	ci right 1.158916e-02	k: 1318	n:120000
Cons ci ratio: 1.063259e-01	ci left: 1.060414e-02	ci right 1.180299e-02	k: 1343	n:120000
KS ci ratio: 8.896550e-03	ci left: 6.152523e-01	ci right 6.207587e-01	k: 74161	n:120000
STXBP2   120000 perm   28 sec   (4249 perm/sec)   p_kst 6.180083e-01   p_cons 1.119167e-02   p_joint 1.098333e-02

Joint ci ratio: 1.023325e-01	ci left: 1.059003e-02	ci right 1.173962e-02	k: 1450	n:130000
Cons ci ratio: 1.013828e-01	ci left: 1.079249e-02	ci right 1.195254e-02	k: 1477	n:130000
KS ci ratio: 8.543925e-03	ci left: 6.155603e-01	ci right 6.208498e-01	k: 80367	n:130000
STXBP2   130000 perm   31 sec   (4187 perm/sec)   p_kst 6.182077e-01   p_cons 1.136154e-02   p_joint 1.115385e-02

Joint ci ratio: 1.000315e-01	ci left: 1.030695e-02	ci right 1.139917e-02	k: 1518	n:140000
Cons ci ratio: 9.774751e-02	ci left: 1.080168e-02	ci right 1.191869e-02	k: 1589	n:140000
KS ci ratio: 8.240872e-03	ci left: 6.152129e-01	ci right 6.203108e-01	k: 86487	n:140000
STXBP2   140000 perm   34 sec   (4128 perm/sec)   p_kst 6.177643e-01   p_cons 1.135000e-02   p_joint 1.084286e-02

Joint ci ratio: 1.205493e-01	ci left: 6.577835e-03	ci right 7.428056e-03	k: 1049	n:150000
Cons ci ratio: 9.372806e-02	ci left: 1.098610e-02	ci right 1.207290e-02	k: 1728	n:150000
KS ci ratio: 7.962526e-03	ci left: 6.152352e-01	ci right 6.201602e-01	k: 92655	n:150000
STXBP2   150000 perm   37 sec   (4069 perm/sec)   p_kst 6.177000e-01   p_cons 1.152000e-02   p_joint 6.993333e-03

Joint ci ratio: 1.137909e-01	ci left: 6.943362e-03	ci right 7.787137e-03	k: 1177	n:160000
Cons ci ratio: 9.070871e-02	ci left: 1.101386e-02	ci right 1.206645e-02	k: 1845	n:160000
KS ci ratio: 7.707646e-03	ci left: 6.154388e-01	ci right 6.202069e-01	k: 98852	n:160000
STXBP2   160000 perm   40 sec   (4012 perm/sec)   p_kst 6.178250e-01   p_cons 1.153125e-02   p_joint 7.356250e-03

Joint ci ratio: 1.107337e-01	ci left: 6.912256e-03	ci right 7.728210e-03	k: 1243	n:170000
Cons ci ratio: 8.809985e-02	ci left: 1.100433e-02	ci right 1.202420e-02	k: 1956	n:170000
KS ci ratio: 7.478752e-03	ci left: 6.154322e-01	ci right 6.200579e-01	k: 105017	n:170000
STXBP2   170000 perm   43 sec   (3956 perm/sec)   p_kst 6.177471e-01   p_cons 1.150588e-02   p_joint 7.311765e-03

Joint ci ratio: 1.079104e-01	ci left: 6.884878e-03	ci right 7.675561e-03	k: 1309	n:180000
Cons ci ratio: 8.570386e-02	ci left: 1.099624e-02	ci right 1.198625e-02	k: 2067	n:180000
KS ci ratio: 7.267143e-03	ci left: 6.155561e-01	ci right 6.200512e-01	k: 111205	n:180000
STXBP2   180000 perm   46 sec   (3900 perm/sec)   p_kst 6.178056e-01   p_cons 1.148333e-02   p_joint 7.272222e-03

Joint ci ratio: 1.053311e-01	ci left: 6.855492e-03	ci right 7.622815e-03	k: 1374	n:190000
Cons ci ratio: 8.359037e-02	ci left: 1.096357e-02	ci right 1.192511e-02	k: 2173	n:190000
KS ci ratio: 7.074270e-03	ci left: 6.155527e-01	ci right 6.199279e-01	k: 117371	n:190000
STXBP2   190000 perm   49 sec   (3846 perm/sec)   p_kst 6.177421e-01   p_cons 1.143684e-02   p_joint 7.231579e-03

Joint ci ratio: 1.028204e-01	ci left: 6.843865e-03	ci right 7.590525e-03	k: 1442	n:200000
Cons ci ratio: 8.169840e-02	ci left: 1.091484e-02	ci right 1.184941e-02	k: 2275	n:200000
KS ci ratio: 6.889485e-03	ci left: 6.159965e-01	ci right 6.202600e-01	k: 123626	n:200000
STXBP2   200000 perm   53 sec   (3794 perm/sec)   p_kst 6.181300e-01   p_cons 1.137500e-02   p_joint 7.210000e-03

Joint ci ratio: 1.002476e-01	ci left: 6.866044e-03	ci right 7.595276e-03	k: 1517	n:210000
Cons ci ratio: 7.991234e-02	ci left: 1.087564e-02	ci right 1.178554e-02	k: 2378	n:210000
KS ci ratio: 6.721979e-03	ci left: 6.161515e-01	ci right 6.203119e-01	k: 129829	n:210000
STXBP2   210000 perm   56 sec   (3745 perm/sec)   p_kst 6.182333e-01   p_cons 1.132381e-02   p_joint 7.223810e-03

Joint ci ratio: 9.798262e-02	ci left: 6.868679e-03	ci right 7.580761e-03	k: 1588	n:220000
Cons ci ratio: 7.801625e-02	ci left: 1.090261e-02	ci right 1.179215e-02	k: 2495	n:220000
KS ci ratio: 6.568211e-03	ci left: 6.161433e-01	ci right 6.202081e-01	k: 135999	n:220000
STXBP2   220000 perm   60 sec   (3693 perm/sec)   p_kst 6.181773e-01   p_cons 1.134091e-02   p_joint 7.218182e-03

Outputting figure to mutsig2_images.part000000000169/STXBP2.2_1858_220000_0.61818_0.011341_0.0072182.png
                gene_name: STXBP2
               theta_stop: 0.098 
                    nperm: 220000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.0072 
     ci_joint_bounds_left: 0.0069 
    ci_joint_bounds_right: 0.0076 

Current progress: 72 percent done.
STYX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.502814e-01	ci left: 5.889456e-02	ci right 6.856151e-02	k: 636	n:10000
Cons ci ratio: 9.699204e-02	ci left: 1.335486e-01	ci right 1.472617e-01	k: 1403	n:10000
KS ci ratio: 1.039475e-01	ci left: 1.179914e-01	ci right 1.310282e-01	k: 1244	n:10000
STYX   10000 perm   1 sec   (6840 perm/sec)   p_kst 1.244000e-01   p_cons 1.403000e-01   p_joint 6.360000e-02

Joint ci ratio: 1.084663e-01	ci left: 5.796573e-02	ci right 6.466251e-02	k: 1225	n:20000
Cons ci ratio: 7.634997e-02	ci left: 1.119863e-01	ci right 1.209255e-01	k: 2328	n:20000
KS ci ratio: 7.280364e-02	ci left: 1.219718e-01	ci right 1.312370e-01	k: 2531	n:20000
STYX   20000 perm   3 sec   (5932 perm/sec)   p_kst 1.265500e-01   p_cons 1.164000e-01   p_joint 6.125000e-02

Joint ci ratio: 8.810456e-02	ci left: 5.916639e-02	ci right 6.465217e-02	k: 1856	n:30000
Cons ci ratio: 6.231464e-02	ci left: 1.128902e-01	ci right 1.201842e-01	k: 3495	n:30000
KS ci ratio: 5.980539e-02	ci left: 1.215077e-01	ci right 1.290317e-01	k: 3757	n:30000
STYX   30000 perm   5 sec   (5619 perm/sec)   p_kst 1.252333e-01   p_cons 1.165000e-01   p_joint 6.186667e-02

Outputting figure to mutsig2_images.part000000000169/STYX.2_716_30000_0.12523_0.1165_0.061867.png
                gene_name: STYX
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.065 

Current progress: 74 percent done.
STYXL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.273486e-02	ci left: 5.793822e-01	ci right 5.987658e-01	k: 5891	n:10000
Cons ci ratio: 2.904749e-02	ci left: 6.360330e-01	ci right 6.548822e-01	k: 6455	n:10000
KS ci ratio: 3.221025e-02	ci left: 5.872089e-01	ci right 6.065346e-01	k: 5969	n:10000
STYXL1   10000 perm   1 sec   (6694 perm/sec)   p_kst 5.969000e-01   p_cons 6.455000e-01   p_joint 5.891000e-01

Outputting figure to mutsig2_images.part000000000169/STYXL1.2_974_10000_0.5969_0.6455_0.5891.png
                gene_name: STYXL1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 75 percent done.
SUCLG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.105447e-01	ci left: 2.996481e-02	ci right 3.711029e-02	k: 334	n:10000
Cons ci ratio: 6.635571e-02	ci left: 2.500393e-01	ci right 2.673015e-01	k: 2586	n:10000
KS ci ratio: 2.209987e-01	ci left: 2.712237e-02	ci right 3.395474e-02	k: 304	n:10000
SUCLG1   10000 perm   1 sec   (6680 perm/sec)   p_kst 3.040000e-02   p_cons 2.586000e-01   p_joint 3.340000e-02

Joint ci ratio: 1.625657e-01	ci left: 2.594951e-02	ci right 3.058899e-02	k: 564	n:20000
Cons ci ratio: 4.697604e-02	ci left: 2.521452e-01	ci right 2.643252e-01	k: 5164	n:20000
KS ci ratio: 1.535677e-01	ci left: 2.912262e-02	ci right 3.401482e-02	k: 630	n:20000
SUCLG1   20000 perm   3 sec   (5828 perm/sec)   p_kst 3.150000e-02   p_cons 2.582000e-01   p_joint 2.820000e-02

Joint ci ratio: 1.420166e-01	ci left: 2.300533e-02	ci right 2.655419e-02	k: 742	n:30000
Cons ci ratio: 3.851503e-02	ci left: 2.516979e-01	ci right 2.616159e-01	k: 7699	n:30000
KS ci ratio: 1.251497e-01	ci left: 2.968161e-02	ci right 3.367643e-02	k: 949	n:30000
SUCLG1   30000 perm   5 sec   (5507 perm/sec)   p_kst 3.163333e-02   p_cons 2.566333e-01   p_joint 2.473333e-02

Joint ci ratio: 1.314456e-01	ci left: 2.031864e-02	ci right 2.320137e-02	k: 869	n:40000
Cons ci ratio: 3.346613e-02	ci left: 2.511070e-01	ci right 2.596786e-01	k: 10215	n:40000
KS ci ratio: 1.080169e-01	ci left: 3.015070e-02	ci right 3.361770e-02	k: 1274	n:40000
SUCLG1   40000 perm   8 sec   (5323 perm/sec)   p_kst 3.185000e-02   p_cons 2.553750e-01   p_joint 2.172500e-02

Joint ci ratio: 1.163980e-01	ci left: 2.088752e-02	ci right 2.348836e-02	k: 1108	n:50000
Cons ci ratio: 2.987491e-02	ci left: 2.522983e-01	ci right 2.599700e-01	k: 12806	n:50000
KS ci ratio: 9.595467e-02	ci left: 3.074801e-02	ci right 3.386660e-02	k: 1614	n:50000
SUCLG1   50000 perm   10 sec   (5183 perm/sec)   p_kst 3.228000e-02   p_cons 2.561200e-01   p_joint 2.216000e-02

Joint ci ratio: 1.060855e-01	ci left: 2.106840e-02	ci right 2.344479e-02	k: 1334	n:60000
Cons ci ratio: 2.721648e-02	ci left: 2.534074e-01	ci right 2.604161e-01	k: 15414	n:60000
KS ci ratio: 8.722298e-02	ci left: 3.114440e-02	ci right 3.400105e-02	k: 1953	n:60000
SUCLG1   60000 perm   12 sec   (5052 perm/sec)   p_kst 3.255000e-02   p_cons 2.569000e-01   p_joint 2.223333e-02

Joint ci ratio: 9.354583e-02	ci left: 2.332548e-02	ci right 2.562845e-02	k: 1712	n:70000
Cons ci ratio: 2.530281e-02	ci left: 2.520872e-01	ci right 2.585617e-01	k: 17872	n:70000
KS ci ratio: 8.060073e-02	ci left: 3.136673e-02	ci right 3.401505e-02	k: 2287	n:70000
SUCLG1   70000 perm   14 sec   (4922 perm/sec)   p_kst 3.267143e-02   p_cons 2.553143e-01   p_joint 2.445714e-02

Outputting figure to mutsig2_images.part000000000169/SUCLG1.2_1077_70000_0.032671_0.25531_0.024457.png
                gene_name: SUCLG1
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.034 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.026 

Current progress: 77 percent done.
SUCNR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.417103e-02	ci left: 4.307383e-01	ci right 4.502963e-01	k: 4405	n:10000
Cons ci ratio: 5.626217e-02	ci left: 3.175092e-01	ci right 3.359918e-01	k: 3267	n:10000
KS ci ratio: 5.407281e-02	ci left: 3.350832e-01	ci right 3.538075e-01	k: 3444	n:10000
SUCNR1   10000 perm   1 sec   (7029 perm/sec)   p_kst 3.444000e-01   p_cons 3.267000e-01   p_joint 4.405000e-01

Outputting figure to mutsig2_images.part000000000169/SUCNR1.2_1013_10000_0.3444_0.3267_0.4405.png
                gene_name: SUCNR1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 79 percent done.
SULT1A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.650076e-03	ci left: 9.895002e-01	ci right 9.932050e-01	k: 9915	n:10000
Cons ci ratio: 2.953145e-02	ci left: 6.283912e-01	ci right 6.473284e-01	k: 6379	n:10000
KS ci ratio: 9.276662e-02	ci left: 1.444270e-01	ci right 1.585767e-01	k: 1514	n:10000
SULT1A1   10000 perm   1 sec   (6829 perm/sec)   p_kst 1.514000e-01   p_cons 6.379000e-01   p_joint 9.915000e-01

Outputting figure to mutsig2_images.part000000000169/SULT1A1.2_1062_10000_0.1514_0.6379_0.9915.png
                gene_name: SULT1A1
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 80 percent done.
SULT1C2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.101236e-02	ci left: 6.053805e-01	ci right 6.245524e-01	k: 6150	n:10000
KS ci ratio: 3.398073e-02	ci left: 5.611297e-01	ci right 5.806290e-01	k: 5709	n:10000
SULT1C2   10000 perm   1 sec   (6713 perm/sec)   p_kst 5.709000e-01   p_cons 6.150000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/SULT1C2.2_1018_10000_0.5709_0.615_1.png
                gene_name: SULT1C2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
SULT1E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.050099e-01	ci left: 1.158415e-01	ci right 1.287794e-01	k: 1222	n:10000
Cons ci ratio: 3.669516e-02	ci left: 5.230630e-01	ci right 5.427178e-01	k: 5329	n:10000
KS ci ratio: 1.106525e-01	ci left: 1.052972e-01	ci right 1.177301e-01	k: 1114	n:10000
SULT1E1   10000 perm   1 sec   (6702 perm/sec)   p_kst 1.114000e-01   p_cons 5.329000e-01   p_joint 1.222000e-01

Joint ci ratio: 3.737899e-02	ci left: 3.481158e-01	ci right 3.614264e-01	k: 7095	n:20000
Cons ci ratio: 2.570779e-02	ci left: 5.306100e-01	ci right 5.444791e-01	k: 10751	n:20000
KS ci ratio: 7.746481e-02	ci left: 1.090861e-01	ci right 1.179266e-01	k: 2269	n:20000
SULT1E1   20000 perm   3 sec   (5854 perm/sec)   p_kst 1.134500e-01   p_cons 5.375500e-01   p_joint 3.547500e-01

Outputting figure to mutsig2_images.part000000000169/SULT1E1.2_913_20000_0.11345_0.53755_0.35475.png
                gene_name: SULT1E1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 84 percent done.
SULT2A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.106854e-02	ci left: 2.828028e-01	ci right 3.007187e-01	k: 2917	n:10000
Cons ci ratio: 6.325116e-02	ci left: 2.686408e-01	ci right 2.862890e-01	k: 2774	n:10000
KS ci ratio: 7.537082e-02	ci left: 2.048126e-01	ci right 2.209550e-01	k: 2128	n:10000
SULT2A1   10000 perm   1 sec   (6965 perm/sec)   p_kst 2.128000e-01   p_cons 2.774000e-01   p_joint 2.917000e-01

Outputting figure to mutsig2_images.part000000000169/SULT2A1.2_882_10000_0.2128_0.2774_0.2917.png
                gene_name: SULT2A1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 85 percent done.
SUMF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.867750e-02	ci left: 8.072482e-01	ci right 8.225679e-01	k: 8150	n:10000
Cons ci ratio: 4.082690e-02	ci left: 4.697655e-01	ci right 4.894464e-01	k: 4796	n:10000
KS ci ratio: 2.946119e-02	ci left: 6.294971e-01	ci right 6.484219e-01	k: 6390	n:10000
SUMF1   10000 perm   1 sec   (6865 perm/sec)   p_kst 6.390000e-01   p_cons 4.796000e-01   p_joint 8.150000e-01

Outputting figure to mutsig2_images.part000000000169/SUMF1.2_1161_10000_0.639_0.4796_0.815.png
                gene_name: SUMF1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 87 percent done.
SUN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.768697e-02	ci left: 5.097532e-01	ci right 5.294354e-01	k: 5196	n:10000
Cons ci ratio: 3.371106e-02	ci left: 5.650398e-01	ci right 5.845166e-01	k: 5748	n:10000
KS ci ratio: 4.084326e-02	ci left: 4.695657e-01	ci right 4.892463e-01	k: 4794	n:10000
SUN1   10000 perm   2 sec   (5851 perm/sec)   p_kst 4.794000e-01   p_cons 5.748000e-01   p_joint 5.196000e-01

Outputting figure to mutsig2_images.part000000000169/SUN1.2_2617_10000_0.4794_0.5748_0.5196.png
                gene_name: SUN1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 89 percent done.
SUN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.665240e-01	ci left: 4.811345e-02	ci right 5.694952e-02	k: 524	n:10000
Cons ci ratio: 2.408683e-01	ci left: 2.268733e-02	ci right 2.899301e-02	k: 257	n:10000
KS ci ratio: 6.903923e-03	ci left: 9.664666e-01	ci right 9.732560e-01	k: 9700	n:10000
SUN2   10000 perm   2 sec   (6068 perm/sec)   p_kst 9.700000e-01   p_cons 2.570000e-02   p_joint 5.240000e-02

Joint ci ratio: 1.200634e-01	ci left: 4.755432e-02	ci right 5.367717e-02	k: 1011	n:20000
Cons ci ratio: 1.732762e-01	ci left: 2.278476e-02	ci right 2.715484e-02	k: 498	n:20000
KS ci ratio: 4.869871e-03	ci left: 9.676452e-01	ci right 9.724168e-01	k: 19402	n:20000
SUN2   20000 perm   4 sec   (5358 perm/sec)   p_kst 9.701000e-01   p_cons 2.490000e-02   p_joint 5.055000e-02

Joint ci ratio: 9.300840e-02	ci left: 5.329426e-02	ci right 5.852549e-02	k: 1676	n:30000
Cons ci ratio: 1.401893e-01	ci left: 2.361682e-02	ci right 2.720923e-02	k: 761	n:30000
KS ci ratio: 3.970694e-03	ci left: 9.681787e-01	ci right 9.720628e-01	k: 29105	n:30000
SUN2   30000 perm   6 sec   (5088 perm/sec)   p_kst 9.701667e-01   p_cons 2.536667e-02   p_joint 5.586667e-02

Joint ci ratio: 5.606622e-02	ci left: 1.058385e-01	ci right 1.119684e-01	k: 4355	n:40000
Cons ci ratio: 1.236749e-01	ci left: 2.298284e-02	ci right 2.603672e-02	k: 979	n:40000
KS ci ratio: 3.412497e-03	ci left: 9.688975e-01	ci right 9.722337e-01	k: 38824	n:40000
SUN2   40000 perm   9 sec   (4685 perm/sec)   p_kst 9.706000e-01   p_cons 2.447500e-02   p_joint 1.088750e-01

Joint ci ratio: 4.950676e-02	ci left: 1.086548e-01	ci right 1.141904e-01	k: 5570	n:50000
Cons ci ratio: 1.090765e-01	ci left: 2.380489e-02	ci right 2.657061e-02	k: 1258	n:50000
KS ci ratio: 3.074375e-03	ci left: 9.686516e-01	ci right 9.716535e-01	k: 48509	n:50000
SUN2   50000 perm   11 sec   (4590 perm/sec)   p_kst 9.701800e-01   p_cons 2.516000e-02   p_joint 1.114000e-01

Joint ci ratio: 4.747087e-02	ci left: 9.962229e-02	ci right 1.044829e-01	k: 6122	n:60000
Cons ci ratio: 1.077481e-01	ci left: 2.041919e-02	ci right 2.276074e-02	k: 1294	n:60000
KS ci ratio: 2.847949e-03	ci left: 9.679055e-01	ci right 9.706822e-01	k: 58159	n:60000
SUN2   60000 perm   13 sec   (4508 perm/sec)   p_kst 9.693167e-01   p_cons 2.156667e-02   p_joint 1.020333e-01

Joint ci ratio: 4.340181e-02	ci left: 1.021016e-01	ci right 1.066455e-01	k: 7305	n:70000
Cons ci ratio: 1.000889e-01	ci left: 2.036857e-02	ci right 2.252850e-02	k: 1500	n:70000
KS ci ratio: 2.624655e-03	ci left: 9.682868e-01	ci right 9.708455e-01	k: 67871	n:70000
SUN2   70000 perm   16 sec   (4439 perm/sec)   p_kst 9.695857e-01   p_cons 2.142857e-02   p_joint 1.043571e-01

Joint ci ratio: 4.319183e-02	ci left: 9.133019e-02	ci right 9.537435e-02	k: 7467	n:80000
Cons ci ratio: 9.341421e-02	ci left: 2.053047e-02	ci right 2.255443e-02	k: 1722	n:80000
KS ci ratio: 2.459160e-03	ci left: 9.682723e-01	ci right 9.706685e-01	k: 77559	n:80000
SUN2   80000 perm   18 sec   (4379 perm/sec)   p_kst 9.694875e-01   p_cons 2.152500e-02   p_joint 9.333750e-02

Outputting figure to mutsig2_images.part000000000169/SUN2.2_2222_80000_0.96949_0.021525_0.093338.png
                gene_name: SUN2
               theta_stop: 0.093 
                    nperm: 80000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.021 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.095 

Current progress: 90 percent done.
SUOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.966194e-02	ci left: 7.910089e-01	ci right 8.068166e-01	k: 7990	n:10000
KS ci ratio: 6.582365e-02	ci left: 2.531052e-01	ci right 2.704338e-01	k: 2617	n:10000
SUOX   10000 perm   2 sec   (6321 perm/sec)   p_kst 2.617000e-01   p_cons 7.990000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/SUOX.2_1650_10000_0.2617_0.799_1.png
                gene_name: SUOX
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
SUPT4H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.642256e-01	ci left: 4.945836e-02	ci right 5.840374e-02	k: 538	n:10000
Cons ci ratio: 2.034267e-01	ci left: 3.214923e-02	ci right 3.952436e-02	k: 357	n:10000
KS ci ratio: 8.658327e-02	ci left: 1.626846e-01	ci right 1.775081e-01	k: 1700	n:10000
SUPT4H1   10000 perm   1 sec   (7239 perm/sec)   p_kst 1.700000e-01   p_cons 3.570000e-02   p_joint 5.380000e-02

Joint ci ratio: 7.674209e-02	ci left: 1.109540e-01	ci right 1.198582e-01	k: 2307	n:20000
Cons ci ratio: 1.363231e-01	ci left: 3.698772e-02	ci right 4.244714e-02	k: 793	n:20000
KS ci ratio: 6.032916e-02	ci left: 1.690156e-01	ci right 1.795793e-01	k: 3485	n:20000
SUPT4H1   20000 perm   3 sec   (6302 perm/sec)   p_kst 1.742500e-01   p_cons 3.965000e-02   p_joint 1.153500e-01

Joint ci ratio: 6.246643e-02	ci left: 1.123970e-01	ci right 1.196775e-01	k: 3480	n:30000
Cons ci ratio: 1.114544e-01	ci left: 3.738879e-02	ci right 4.183427e-02	k: 1187	n:30000
KS ci ratio: 4.892485e-02	ci left: 1.719366e-01	ci right 1.805928e-01	k: 5287	n:30000
SUPT4H1   30000 perm   5 sec   (5963 perm/sec)   p_kst 1.762333e-01   p_cons 3.956667e-02   p_joint 1.160000e-01

Joint ci ratio: 3.532384e-02	ci left: 2.312244e-01	ci right 2.395640e-01	k: 9415	n:40000
Cons ci ratio: 9.655446e-02	ci left: 3.766101e-02	ci right 4.150620e-02	k: 1582	n:40000
KS ci ratio: 4.235811e-02	ci left: 1.726014e-01	ci right 1.800956e-01	k: 7053	n:40000
SUPT4H1   40000 perm   7 sec   (5746 perm/sec)   p_kst 1.763250e-01   p_cons 3.955000e-02   p_joint 2.353750e-01

Outputting figure to mutsig2_images.part000000000169/SUPT4H1.2_374_40000_0.17633_0.03955_0.23538.png
                gene_name: SUPT4H1
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 93 percent done.
SUPT7L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.984796e-02	ci left: 1.863882e-01	ci right 2.019904e-01	k: 1941	n:10000
KS ci ratio: 3.193658e-02	ci left: 5.913239e-01	ci right 6.106172e-01	k: 6010	n:10000
SUPT7L   10000 perm   2 sec   (6592 perm/sec)   p_kst 6.010000e-01   p_cons 1.941000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000169/SUPT7L.2_1265_10000_0.601_0.1941_1.png
                gene_name: SUPT7L
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
SUSD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.888965e-02	ci left: 4.940505e-01	ci right 5.137472e-01	k: 5039	n:10000
Cons ci ratio: 6.276574e-02	ci left: 2.717099e-01	ci right 2.894181e-01	k: 2805	n:10000
KS ci ratio: 2.833402e-02	ci left: 6.473999e-01	ci right 6.661087e-01	k: 6568	n:10000
SUSD3   10000 perm   1 sec   (6863 perm/sec)   p_kst 6.568000e-01   p_cons 2.805000e-01   p_joint 5.039000e-01

Outputting figure to mutsig2_images.part000000000169/SUSD3.2_788_10000_0.6568_0.2805_0.5039.png
                gene_name: SUSD3
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 97 percent done.
SWAP70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.894111e-02	ci left: 1.899330e-01	ci right 2.056434e-01	k: 1977	n:10000
Cons ci ratio: 2.452213e-03	ci left: 9.947879e-01	ci right 9.973095e-01	k: 9962	n:10000
KS ci ratio: 1.099325e-01	ci left: 1.065655e-01	ci right 1.190610e-01	k: 1127	n:10000
SWAP70   10000 perm   2 sec   (6423 perm/sec)   p_kst 1.127000e-01   p_cons 9.962000e-01   p_joint 1.977000e-01

Joint ci ratio: 2.807354e-02	ci left: 4.866474e-01	ci right 5.005545e-01	k: 9872	n:20000
Cons ci ratio: 1.831926e-03	ci left: 9.946922e-01	ci right 9.965592e-01	k: 19914	n:20000
KS ci ratio: 7.796938e-02	ci left: 1.078084e-01	ci right 1.166047e-01	k: 2243	n:20000
SWAP70   20000 perm   4 sec   (5651 perm/sec)   p_kst 1.121500e-01   p_cons 9.957000e-01   p_joint 4.936000e-01

Outputting figure to mutsig2_images.part000000000169/SWAP70.2_1806_20000_0.11215_0.9957_0.4936.png
                gene_name: SWAP70
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.50 

Current progress: 98 percent done.
SYBU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.690941e-02	ci left: 5.201603e-01	ci right 5.398222e-01	k: 5300	n:10000
Cons ci ratio: 7.200770e-02	ci left: 2.203008e-01	ci right 2.368576e-01	k: 2285	n:10000
KS ci ratio: 2.901577e-02	ci left: 6.365358e-01	ci right 6.553791e-01	k: 6460	n:10000
SYBU   10000 perm   2 sec   (6375 perm/sec)   p_kst 6.460000e-01   p_cons 2.285000e-01   p_joint 5.300000e-01

Outputting figure to mutsig2_images.part000000000169/SYBU.2_2035_10000_0.646_0.2285_0.53.png
                gene_name: SYBU
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000169
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 169 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1649>
Subject: Job 9894166: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1649>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000170> was used as the working directory.
Started at Sat Oct  6 00:31:20 2012
Results reported at Sat Oct  6 01:46:33 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000170.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000170.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 170  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000170.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   4484.41 sec.
    Max Memory :      3567 MB
    Max Swap   :      6074 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
170
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 170
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 170: processing genes 15236 - 15326
Calculating significance of each gene.
Using projection method.
15236	SYCE1	1.446529e-01
15237	SYCE2	2.364041e-01
15238	SYCN	1
15239	SYCP1	8.423810e-02
15240	SYCP2	1.246847e-01
15241	SYCP2L	9.745931e-02
15242	SYCP3	5.763926e-01
15243	SYDE1	6.183639e-01
15244	SYDE2	3.805025e-01
15245	SYF2	7.521121e-01
15246	SYK	5.964355e-01
15247	SYMPK	9.919214e-01
15248	SYN1	1.284959e-01
15249	SYN2	4.717944e-01
15250	SYN3	1.901229e-01
15251	SYNC	1.331234e-02
15252	SYNCRIP	3.388100e-01
15253	SYNE1	1.117033e-05
15254	SYNE2	9.981130e-01
15255	SYNGAP1	9.234427e-01
15256	SYNGR1	1
15257	SYNGR2	1
15258	SYNGR3	1
15259	SYNGR4	2.621009e-01
15260	SYNJ1	6.234339e-01
15261	SYNJ2	9.851905e-01
15262	SYNJ2BP	2.879920e-01
15263	SYNM	7.878195e-01
15264	SYNPO	7.675890e-01
15265	SYNPO2	1.431323e-01
15266	SYNPO2L	8.015791e-01
15267	SYNPR	5.917970e-01
15268	SYNRG	9.469885e-01
15269	SYP	1
15270	SYPL1	1.064627e-01
15271	SYPL2	1.312205e-01
15272	SYS1	3.359073e-01
15273	SYT1	8.167494e-01
15274	SYT10	1.097317e-02
15275	SYT11	1
15276	SYT12	7.488004e-01
15277	SYT13	9.181691e-01
15278	SYT14	1.717557e-02
15279	SYT15	4.777942e-02
15280	SYT16	2.580011e-03
15281	SYT17	7.330075e-01
15282	SYT2	6.111405e-01
15283	SYT3	4.201289e-01
15284	SYT4	2.955169e-01
15285	SYT5	1.364520e-01
15286	SYT6	1.585761e-02
15287	SYT7	2.927070e-01
15288	SYT8	1
15289	SYT9	3.347786e-01
15290	SYTL1	2.989604e-01
15291	SYTL2	9.493036e-01
15292	SYTL3	2.162472e-01
15293	SYTL4	6.493274e-01
15294	SYTL5	1.075271e-01
15295	SYVN1	4.619238e-01
15296	T	4.321441e-01
15297	TAAR1	1.210979e-01
15298	TAAR2	2.296328e-01
15299	TAAR5	2.767953e-02
15300	TAAR6	8.923885e-02
15301	TAAR8	5.547184e-01
15302	TAAR9	5.893290e-01
15303	TAB1	9.269532e-01
15304	TAB2	8.368606e-01
15305	TAB3	4.198199e-01
15306	TAC1	1.251877e-01
15307	TAC3	1
15308	TAC4	4.335635e-01
15309	TACC1	4.858716e-01
15310	TACC2	7.934242e-01
15311	TACC3	9.755917e-01
15312	TACO1	1
15313	TACR1	5.736436e-01
15314	TACR2	8.868263e-01
15315	TACR3	3.255766e-02
15316	TACSTD2	1
15317	TADA1	6.546982e-01
15318	TADA2A	1
15319	TADA2B	8.731039e-01
15320	TADA3	4.065358e-01
15321	TAF1	5.184239e-01
15322	TAF10	1
15323	TAF11	5.250464e-01
15324	TAF12	1
15325	TAF13	1
15326	TAF15	8.301681e-01
Done

Running MutSig 2:
Scatter job 170: processing genes 15236 - 15326
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
SYNE1
Processing conservation and coverage...
36% 73% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.465118e-02	ci left: 5.515074e-01	ci right 5.710568e-01	k: 5613	n:10000
Cons ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
KS ci ratio: 3.448967e-02	ci left: 5.538124e-01	ci right 5.733505e-01	k: 5636	n:10000
SYNE1   10000 perm   8 sec   (1317 perm/sec)   p_kst 5.636000e-01   p_cons 2.869000e-01   p_joint 5.613000e-01

Outputting figure to mutsig2_images.part000000000170/SYNE1.100_27068_10000_0.5636_0.2869_0.5613.png
                gene_name: SYNE1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 2 percent done.
SYNE2
Processing conservation and coverage...
47% 94% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.510200e-02	ci left: 2.059958e-01	ci right 2.221711e-01	k: 2140	n:10000
Cons ci ratio: 6.748669e-03	ci left: 9.678372e-01	ci right 9.744845e-01	k: 9713	n:10000
KS ci ratio: 1.172700e-01	ci left: 9.457666e-02	ci right 1.064572e-01	k: 1004	n:10000
SYNE2   10000 perm   4 sec   (2309 perm/sec)   p_kst 1.004000e-01   p_cons 9.713000e-01   p_joint 2.140000e-01

Joint ci ratio: 5.579413e-02	ci left: 1.923975e-01	ci right 2.034904e-01	k: 3958	n:20000
Cons ci ratio: 4.823582e-03	ci left: 9.682163e-01	ci right 9.729456e-01	k: 19413	n:20000
KS ci ratio: 8.352586e-02	ci left: 9.504152e-02	ci right 1.033754e-01	k: 1983	n:20000
SYNE2   20000 perm   9 sec   (2158 perm/sec)   p_kst 9.915000e-02   p_cons 9.706500e-01   p_joint 1.979000e-01

Outputting figure to mutsig2_images.part000000000170/SYNE2.23_21229_20000_0.09915_0.97065_0.1979.png
                gene_name: SYNE2
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 3 percent done.
SYNPO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.176252e-02	ci left: 4.584803e-01	ci right 4.781381e-01	k: 4683	n:10000
Cons ci ratio: 4.528124e-02	ci left: 4.185735e-01	ci right 4.380683e-01	k: 4283	n:10000
KS ci ratio: 5.614730e-02	ci left: 3.184024e-01	ci right 3.368981e-01	k: 3276	n:10000
SYNPO2   10000 perm   2 sec   (4644 perm/sec)   p_kst 3.276000e-01   p_cons 4.283000e-01   p_joint 4.683000e-01

Outputting figure to mutsig2_images.part000000000170/SYNPO2.15_3918_10000_0.3276_0.4283_0.4683.png
                gene_name: SYNPO2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 5 percent done.
SYCP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.267405e-02	ci left: 5.802852e-01	ci right 5.996624e-01	k: 5900	n:10000
Cons ci ratio: 2.688917e-02	ci left: 6.707558e-01	ci right 6.891393e-01	k: 6800	n:10000
KS ci ratio: 5.745976e-02	ci left: 3.083805e-01	ci right 3.267259e-01	k: 3175	n:10000
SYCP1   10000 perm   2 sec   (4739 perm/sec)   p_kst 3.175000e-01   p_cons 6.800000e-01   p_joint 5.900000e-01

Outputting figure to mutsig2_images.part000000000170/SYCP1.13_3055_10000_0.3175_0.68_0.59.png
                gene_name: SYCP1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 6 percent done.
SYCP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.071561e-02	ci left: 3.644048e-01	ci right 3.834687e-01	k: 3739	n:10000
Cons ci ratio: 7.786312e-02	ci left: 1.942671e-01	ci right 2.101068e-01	k: 2021	n:10000
KS ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
SYCP2   10000 perm   2 sec   (4290 perm/sec)   p_kst 3.885000e-01   p_cons 2.021000e-01   p_joint 3.739000e-01

Outputting figure to mutsig2_images.part000000000170/SYCP2.12_4765_10000_0.3885_0.2021_0.3739.png
                gene_name: SYCP2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 8 percent done.
TAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.090368e-02	ci left: 7.703319e-01	ci right 7.867055e-01	k: 7786	n:10000
Cons ci ratio: 8.516963e-03	ci left: 9.507523e-01	ci right 9.589800e-01	k: 9550	n:10000
KS ci ratio: 3.025773e-02	ci left: 6.170337e-01	ci right 6.360925e-01	k: 6266	n:10000
TAF1   10000 perm   2 sec   (4293 perm/sec)   p_kst 6.266000e-01   p_cons 9.550000e-01   p_joint 7.786000e-01

Outputting figure to mutsig2_images.part000000000170/TAF1.12_5834_10000_0.6266_0.955_0.7786.png
                gene_name: TAF1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 10 percent done.
SYNJ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.314164e-01	ci left: 7.630693e-02	ci right 8.713821e-02	k: 816	n:10000
Cons ci ratio: 1.317679e-01	ci left: 7.591905e-02	ci right 8.672633e-02	k: 812	n:10000
KS ci ratio: 2.184266e-01	ci left: 2.778487e-02	ci right 3.469176e-02	k: 311	n:10000
SYNJ1   10000 perm   2 sec   (4115 perm/sec)   p_kst 3.110000e-02   p_cons 8.120000e-02   p_joint 8.160000e-02

Joint ci ratio: 1.190752e-01	ci left: 4.833156e-02	ci right 5.449968e-02	k: 1027	n:20000
Cons ci ratio: 9.168046e-02	ci left: 7.989763e-02	ci right 8.762389e-02	k: 1674	n:20000
KS ci ratio: 1.585670e-01	ci left: 2.729474e-02	ci right 3.204331e-02	k: 592	n:20000
SYNJ1   20000 perm   5 sec   (3746 perm/sec)   p_kst 2.960000e-02   p_cons 8.370000e-02   p_joint 5.135000e-02

Joint ci ratio: 1.065093e-01	ci left: 4.089459e-02	ci right 4.552773e-02	k: 1295	n:30000
Cons ci ratio: 7.506126e-02	ci left: 8.019682e-02	ci right 8.648415e-02	k: 2499	n:30000
KS ci ratio: 1.304178e-01	ci left: 2.732382e-02	ci right 3.116807e-02	k: 876	n:30000
SYNJ1   30000 perm   8 sec   (3671 perm/sec)   p_kst 2.920000e-02   p_cons 8.330000e-02   p_joint 4.316667e-02

Joint ci ratio: 8.266407e-02	ci left: 5.102060e-02	ci right 5.544454e-02	k: 2128	n:40000
Cons ci ratio: 6.487081e-02	ci left: 8.092996e-02	ci right 8.638066e-02	k: 3345	n:40000
KS ci ratio: 1.145879e-01	ci left: 2.679393e-02	ci right 3.007501e-02	k: 1136	n:40000
SYNJ1   40000 perm   11 sec   (3608 perm/sec)   p_kst 2.840000e-02   p_cons 8.362500e-02   p_joint 5.320000e-02

Joint ci ratio: 9.830665e-02	ci left: 2.930287e-02	ci right 3.235192e-02	k: 1540	n:50000
Cons ci ratio: 5.969290e-02	ci left: 7.702496e-02	ci right 8.178401e-02	k: 3969	n:50000
KS ci ratio: 1.020941e-01	ci left: 2.717594e-02	ci right 3.011913e-02	k: 1431	n:50000
SYNJ1   50000 perm   14 sec   (3552 perm/sec)   p_kst 2.862000e-02   p_cons 7.938000e-02   p_joint 3.080000e-02

Joint ci ratio: 8.440603e-02	ci left: 3.323345e-02	ci right 3.617844e-02	k: 2081	n:60000
Cons ci ratio: 5.431879e-02	ci left: 7.769313e-02	ci right 8.204761e-02	k: 4791	n:60000
KS ci ratio: 9.227424e-02	ci left: 2.785099e-02	ci right 3.056147e-02	k: 1751	n:60000
SYNJ1   60000 perm   17 sec   (3501 perm/sec)   p_kst 2.918333e-02   p_cons 7.985000e-02   p_joint 3.468333e-02

Outputting figure to mutsig2_images.part000000000170/SYNJ1.11_5001_60000_0.029183_0.07985_0.034683.png
                gene_name: SYNJ1
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.078 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.035 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 11 percent done.
TACC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.420057e-01	ci left: 6.575174e-02	ci right 7.590000e-02	k: 707	n:10000
Cons ci ratio: 8.141213e-02	ci left: 1.804823e-01	ci right 1.958998e-01	k: 1881	n:10000
KS ci ratio: 2.195183e-01	ci left: 2.750089e-02	ci right 3.437595e-02	k: 308	n:10000
TACC2   10000 perm   3 sec   (3639 perm/sec)   p_kst 3.080000e-02   p_cons 1.881000e-01   p_joint 7.070000e-02

Joint ci ratio: 1.419064e-01	ci left: 3.413670e-02	ci right 3.939908e-02	k: 734	n:20000
Cons ci ratio: 5.700881e-02	ci left: 1.857207e-01	ci right 1.966692e-01	k: 3823	n:20000
KS ci ratio: 1.558784e-01	ci left: 2.825647e-02	ci right 3.308125e-02	k: 612	n:20000
TACC2   20000 perm   6 sec   (3336 perm/sec)   p_kst 3.060000e-02   p_cons 1.911500e-01   p_joint 3.670000e-02

Joint ci ratio: 1.218759e-01	ci left: 3.129835e-02	ci right 3.539267e-02	k: 999	n:30000
Cons ci ratio: 4.622415e-02	ci left: 1.888778e-01	ci right 1.978484e-01	k: 5800	n:30000
KS ci ratio: 1.301125e-01	ci left: 2.745293e-02	ci right 3.130560e-02	k: 880	n:30000
TACC2   30000 perm   9 sec   (3212 perm/sec)   p_kst 2.933333e-02   p_cons 1.933333e-01   p_joint 3.330000e-02

Joint ci ratio: 1.087235e-01	ci left: 2.976121e-02	ci right 3.320724e-02	k: 1258	n:40000
Cons ci ratio: 4.015585e-02	ci left: 1.885222e-01	ci right 1.962725e-01	k: 7695	n:40000
KS ci ratio: 1.163373e-01	ci left: 2.599213e-02	ci right 2.922694e-02	k: 1103	n:40000
TACC2   40000 perm   13 sec   (3111 perm/sec)   p_kst 2.757500e-02   p_cons 1.923750e-01   p_joint 3.145000e-02

Joint ci ratio: 1.019476e-01	ci left: 2.725395e-02	ci right 3.020110e-02	k: 1435	n:50000
Cons ci ratio: 3.590729e-02	ci left: 1.890124e-01	ci right 1.959433e-01	k: 9623	n:50000
KS ci ratio: 1.041331e-01	ci left: 2.612305e-02	ci right 2.901216e-02	k: 1377	n:50000
TACC2   50000 perm   16 sec   (3059 perm/sec)   p_kst 2.754000e-02   p_cons 1.924600e-01   p_joint 2.870000e-02

Joint ci ratio: 9.165636e-02	ci left: 2.822576e-02	ci right 3.095333e-02	k: 1774	n:60000
Cons ci ratio: 3.232505e-02	ci left: 1.936583e-01	ci right 2.000377e-01	k: 11810	n:60000
KS ci ratio: 9.472498e-02	ci left: 2.643397e-02	ci right 2.907864e-02	k: 1664	n:60000
TACC2   60000 perm   20 sec   (3012 perm/sec)   p_kst 2.773333e-02   p_cons 1.968333e-01   p_joint 2.956667e-02

Outputting figure to mutsig2_images.part000000000170/TACC2.11_9007_60000_0.027733_0.19683_0.029567.png
                gene_name: TACC2
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.031 

Current progress: 13 percent done.
SYCP2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.688723e-02	ci left: 1.983069e-01	ci right 2.142646e-01	k: 2062	n:10000
Cons ci ratio: 1.459254e-01	ci left: 6.236946e-02	ci right 7.228440e-02	k: 672	n:10000
KS ci ratio: 1.683568e-02	ci left: 8.370436e-01	ci right 8.513552e-01	k: 8443	n:10000
SYCP2L   10000 perm   2 sec   (4781 perm/sec)   p_kst 8.443000e-01   p_cons 6.720000e-02   p_joint 2.062000e-01

Joint ci ratio: 5.792832e-02	ci left: 1.808755e-01	ci right 1.917159e-01	k: 3725	n:20000
Cons ci ratio: 1.044829e-01	ci left: 6.230465e-02	ci right 6.922225e-02	k: 1314	n:20000
KS ci ratio: 1.207550e-02	ci left: 8.353512e-01	ci right 8.455496e-01	k: 16810	n:20000
SYCP2L   20000 perm   5 sec   (4182 perm/sec)   p_kst 8.405000e-01   p_cons 6.570000e-02   p_joint 1.862500e-01

Joint ci ratio: 4.456856e-02	ci left: 2.004108e-01	ci right 2.095798e-01	k: 6149	n:30000
Cons ci ratio: 8.600098e-02	ci left: 6.197460e-02	ci right 6.757672e-02	k: 1942	n:30000
KS ci ratio: 9.858208e-03	ci left: 8.363409e-01	ci right 8.446597e-01	k: 25216	n:30000
SYCP2L   30000 perm   7 sec   (4082 perm/sec)   p_kst 8.405333e-01   p_cons 6.473333e-02   p_joint 2.049667e-01

Outputting figure to mutsig2_images.part000000000170/SYCP2L.9_2555_30000_0.84053_0.064733_0.20497.png
                gene_name: SYCP2L
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.065 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.068 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 15 percent done.
SYT16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.595455e-02	ci left: 6.860719e-01	ci right 7.042143e-01	k: 6952	n:10000
Cons ci ratio: 2.685829e-02	ci left: 6.712594e-01	ci right 6.896353e-01	k: 6805	n:10000
KS ci ratio: 3.458089e-02	ci left: 5.525096e-01	ci right 5.720541e-01	k: 5623	n:10000
SYT16   10000 perm   2 sec   (5003 perm/sec)   p_kst 5.623000e-01   p_cons 6.805000e-01   p_joint 6.952000e-01

Outputting figure to mutsig2_images.part000000000170/SYT16.9_1962_10000_0.5623_0.6805_0.6952.png
                gene_name: SYT16
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 16 percent done.
SYTL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.000832e-02	ci left: 3.709701e-01	ci right 3.900995e-01	k: 3805	n:10000
Cons ci ratio: 6.356810e-02	ci left: 2.666610e-01	ci right 2.842700e-01	k: 2754	n:10000
KS ci ratio: 3.375245e-02	ci left: 5.644382e-01	ci right 5.839185e-01	k: 5742	n:10000
SYTL2   10000 perm   2 sec   (4329 perm/sec)   p_kst 5.742000e-01   p_cons 2.754000e-01   p_joint 3.805000e-01

Outputting figure to mutsig2_images.part000000000170/SYTL2.8_5361_10000_0.5742_0.2754_0.3805.png
                gene_name: SYTL2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 18 percent done.
SYDE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.735752e-02	ci left: 8.286969e-01	ci right 8.433068e-01	k: 8361	n:10000
Cons ci ratio: 3.164444e-02	ci left: 5.957408e-01	ci right 6.149978e-01	k: 6054	n:10000
KS ci ratio: 3.079670e-02	ci left: 6.086951e-01	ci right 6.278360e-01	k: 6183	n:10000
SYDE2   10000 perm   2 sec   (4935 perm/sec)   p_kst 6.183000e-01   p_cons 6.054000e-01   p_joint 8.361000e-01

Outputting figure to mutsig2_images.part000000000170/SYDE2.7_3613_10000_0.6183_0.6054_0.8361.png
                gene_name: SYDE2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 19 percent done.
SYNM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.346729e-02	ci left: 1.731041e-01	ci right 1.882824e-01	k: 1806	n:10000
Cons ci ratio: 8.742056e-02	ci left: 1.600322e-01	ci right 1.747621e-01	k: 1673	n:10000
KS ci ratio: 8.151886e-02	ci left: 1.800887e-01	ci right 1.954937e-01	k: 1877	n:10000
SYNM   10000 perm   2 sec   (4054 perm/sec)   p_kst 1.877000e-01   p_cons 1.673000e-01   p_joint 1.806000e-01

Outputting figure to mutsig2_images.part000000000170/SYNM.7_4713_10000_0.1877_0.1673_0.1806.png
                gene_name: SYNM
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 21 percent done.
SYTL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.091607e-02	ci left: 9.228612e-01	ci right 9.330878e-01	k: 9281	n:10000
Cons ci ratio: 2.841575e-02	ci left: 6.460919e-01	ci right 6.648174e-01	k: 6555	n:10000
KS ci ratio: 2.320499e-02	ci left: 7.317890e-01	ci right 7.490707e-01	k: 7405	n:10000
SYTL5   10000 perm   2 sec   (5521 perm/sec)   p_kst 7.405000e-01   p_cons 6.555000e-01   p_joint 9.281000e-01

Outputting figure to mutsig2_images.part000000000170/SYTL5.7_2327_10000_0.7405_0.6555_0.9281.png
                gene_name: SYTL5
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 23 percent done.
TACR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.457387e-02	ci left: 5.526098e-01	ci right 5.721538e-01	k: 5624	n:10000
Cons ci ratio: 3.556785e-02	ci left: 5.385833e-01	ci right 5.581885e-01	k: 5484	n:10000
KS ci ratio: 5.159332e-02	ci left: 3.564494e-01	ci right 3.754288e-01	k: 3659	n:10000
TACR3   10000 perm   2 sec   (5736 perm/sec)   p_kst 3.659000e-01   p_cons 5.484000e-01   p_joint 5.624000e-01

Outputting figure to mutsig2_images.part000000000170/TACR3.7_1418_10000_0.3659_0.5484_0.5624.png
                gene_name: TACR3
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 24 percent done.
SYNGAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.380955e-02	ci left: 2.118147e-01	ci right 2.281487e-01	k: 2199	n:10000
Cons ci ratio: 1.405162e-01	ci left: 6.710566e-02	ci right 7.734523e-02	k: 721	n:10000
KS ci ratio: 1.588410e-02	ci left: 8.520244e-01	ci right 8.657658e-01	k: 8590	n:10000
SYNGAP1   10000 perm   2 sec   (5000 perm/sec)   p_kst 8.590000e-01   p_cons 7.210000e-02   p_joint 2.199000e-01

Joint ci ratio: 4.632295e-02	ci left: 2.575036e-01	ci right 2.697652e-01	k: 5272	n:20000
Cons ci ratio: 9.699335e-02	ci left: 7.182651e-02	ci right 7.919747e-02	k: 1509	n:20000
KS ci ratio: 1.176559e-02	ci left: 8.422902e-01	ci right 8.523086e-01	k: 16947	n:20000
SYNGAP1   20000 perm   5 sec   (4373 perm/sec)   p_kst 8.473500e-01   p_cons 7.545000e-02   p_joint 2.636000e-01

Outputting figure to mutsig2_images.part000000000170/SYNGAP1.6_4108_20000_0.84735_0.07545_0.2636.png
                gene_name: SYNGAP1
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 26 percent done.
SYNJ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.507969e-02	ci left: 2.060944e-01	ci right 2.222724e-01	k: 2141	n:10000
Cons ci ratio: 2.750894e-02	ci left: 6.606855e-01	ci right 6.792154e-01	k: 6700	n:10000
KS ci ratio: 9.854893e-02	ci left: 1.298276e-01	ci right 1.433848e-01	k: 1365	n:10000
SYNJ2   10000 perm   2 sec   (4565 perm/sec)   p_kst 1.365000e-01   p_cons 6.700000e-01   p_joint 2.141000e-01

Outputting figure to mutsig2_images.part000000000170/SYNJ2.6_4599_10000_0.1365_0.67_0.2141.png
                gene_name: SYNJ2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 27 percent done.
SYT10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.361561e-02	ci left: 7.249193e-01	ci right 7.423444e-01	k: 7337	n:10000
KS ci ratio: 1.846048e-02	ci left: 8.108033e-01	ci right 8.260108e-01	k: 8185	n:10000
SYT10   10000 perm   2 sec   (5491 perm/sec)   p_kst 8.185000e-01   p_cons 7.337000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/SYT10.6_1600_10000_0.8185_0.7337_1.png
                gene_name: SYT10
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 29 percent done.
SYT14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.769094e-01	ci left: 8.686342e-03	ci right 1.280614e-02	k: 106	n:10000
Cons ci ratio: 2.102203e-01	ci left: 3.005970e-02	ci right 3.721534e-02	k: 335	n:10000
KS ci ratio: 2.326663e-01	ci left: 2.438298e-02	ci right 3.089610e-02	k: 275	n:10000
SYT14   10000 perm   2 sec   (5540 perm/sec)   p_kst 2.750000e-02   p_cons 3.350000e-02   p_joint 1.060000e-02

Joint ci ratio: 2.351824e-01	ci left: 1.208789e-02	ci right 1.535574e-02	k: 273	n:20000
Cons ci ratio: 1.491115e-01	ci left: 3.090466e-02	ci right 3.593219e-02	k: 667	n:20000
KS ci ratio: 1.584294e-01	ci left: 2.734281e-02	ci right 3.209522e-02	k: 593	n:20000
SYT14   20000 perm   4 sec   (4980 perm/sec)   p_kst 2.965000e-02   p_cons 3.335000e-02   p_joint 1.365000e-02

Joint ci ratio: 1.493980e-01	ci left: 2.075518e-02	ci right 2.413818e-02	k: 672	n:30000
Cons ci ratio: 1.205723e-01	ci left: 3.197780e-02	ci right 3.611308e-02	k: 1020	n:30000
KS ci ratio: 1.306482e-01	ci left: 2.722700e-02	ci right 3.106491e-02	k: 873	n:30000
SYT14   30000 perm   6 sec   (4776 perm/sec)   p_kst 2.910000e-02   p_cons 3.400000e-02   p_joint 2.240000e-02

Joint ci ratio: 1.637448e-01	ci left: 1.296745e-02	ci right 1.530387e-02	k: 564	n:40000
Cons ci ratio: 1.049523e-01	ci left: 3.192862e-02	ci right 3.548950e-02	k: 1347	n:40000
KS ci ratio: 1.130618e-01	ci left: 2.752316e-02	ci right 3.084566e-02	k: 1166	n:40000
SYT14   40000 perm   9 sec   (4639 perm/sec)   p_kst 2.915000e-02   p_cons 3.367500e-02   p_joint 1.410000e-02

Joint ci ratio: 1.825282e-01	ci left: 8.305354e-03	ci right 9.992373e-03	k: 456	n:50000
Cons ci ratio: 9.460112e-02	ci left: 3.162724e-02	ci right 3.478726e-02	k: 1659	n:50000
KS ci ratio: 1.010100e-01	ci left: 2.776112e-02	ci right 3.073387e-02	k: 1461	n:50000
SYT14   50000 perm   11 sec   (4525 perm/sec)   p_kst 2.922000e-02   p_cons 3.318000e-02   p_joint 9.120000e-03

Joint ci ratio: 1.071576e-01	ci left: 2.064638e-02	ci right 2.300019e-02	k: 1308	n:60000
Cons ci ratio: 8.667429e-02	ci left: 3.153598e-02	ci right 3.440943e-02	k: 1977	n:60000
KS ci ratio: 9.394441e-02	ci left: 2.687364e-02	ci right 2.953893e-02	k: 1691	n:60000
SYT14   60000 perm   14 sec   (4413 perm/sec)   p_kst 2.818333e-02   p_cons 3.295000e-02   p_joint 2.180000e-02

Joint ci ratio: 1.024505e-01	ci left: 1.943518e-02	ci right 2.154768e-02	k: 1433	n:70000
Cons ci ratio: 8.109671e-02	ci left: 3.098857e-02	ci right 3.362181e-02	k: 2260	n:70000
KS ci ratio: 8.697572e-02	ci left: 2.697212e-02	ci right 2.943863e-02	k: 1973	n:70000
SYT14   70000 perm   16 sec   (4320 perm/sec)   p_kst 2.818571e-02   p_cons 3.228571e-02   p_joint 2.047143e-02

Joint ci ratio: 9.341421e-02	ci left: 2.053047e-02	ci right 2.255443e-02	k: 1722	n:80000
Cons ci ratio: 7.602648e-02	ci left: 3.093838e-02	ci right 3.339570e-02	k: 2572	n:80000
KS ci ratio: 8.097142e-02	ci left: 2.730881e-02	ci right 2.962555e-02	k: 2276	n:80000
SYT14   80000 perm   19 sec   (4245 perm/sec)   p_kst 2.845000e-02   p_cons 3.215000e-02   p_joint 2.152500e-02

Outputting figure to mutsig2_images.part000000000170/SYT14.6_1900_80000_0.02845_0.03215_0.021525.png
                gene_name: SYT14
               theta_stop: 0.093 
                    nperm: 80000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 31 percent done.
SYT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.291219e-02	ci left: 4.450047e-01	ci right 4.646217e-01	k: 4548	n:10000
Cons ci ratio: 9.508989e-03	ci left: 9.398315e-01	ci right 9.489074e-01	k: 9445	n:10000
KS ci ratio: 6.809499e-02	ci left: 2.403508e-01	ci right 2.573957e-01	k: 2488	n:10000
SYT6   10000 perm   2 sec   (6157 perm/sec)   p_kst 2.488000e-01   p_cons 9.445000e-01   p_joint 4.548000e-01

Outputting figure to mutsig2_images.part000000000170/SYT6.6_1302_10000_0.2488_0.9445_0.4548.png
                gene_name: SYT6
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 32 percent done.
TAAR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.736385e-02	ci left: 8.285951e-01	ci right 8.432086e-01	k: 8360	n:10000
Cons ci ratio: 3.576934e-02	ci left: 5.357789e-01	ci right 5.553945e-01	k: 5456	n:10000
KS ci ratio: 2.266192e-02	ci left: 7.408856e-01	ci right 7.579689e-01	k: 7495	n:10000
TAAR5   10000 perm   2 sec   (6070 perm/sec)   p_kst 7.495000e-01   p_cons 5.456000e-01   p_joint 8.360000e-01

Outputting figure to mutsig2_images.part000000000170/TAAR5.6_1018_10000_0.7495_0.5456_0.836.png
                gene_name: TAAR5
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 34 percent done.
SYMPK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.875724e-02	ci left: 2.988593e-01	ci right 3.170527e-01	k: 3079	n:10000
Cons ci ratio: 1.288571e-01	ci left: 7.921726e-02	ci right 9.022608e-02	k: 846	n:10000
KS ci ratio: 1.634652e-02	ci left: 8.447858e-01	ci right 8.588086e-01	k: 8519	n:10000
SYMPK   10000 perm   2 sec   (4712 perm/sec)   p_kst 8.519000e-01   p_cons 8.460000e-02   p_joint 3.079000e-01

Joint ci ratio: 3.947352e-02	ci left: 3.236824e-01	ci right 3.367670e-01	k: 6604	n:20000
Cons ci ratio: 9.102956e-02	ci left: 8.097465e-02	ci right 8.874654e-02	k: 1696	n:20000
KS ci ratio: 1.182237e-02	ci left: 8.410237e-01	ci right 8.510755e-01	k: 16922	n:20000
SYMPK   20000 perm   5 sec   (3818 perm/sec)   p_kst 8.461000e-01   p_cons 8.480000e-02   p_joint 3.302000e-01

Outputting figure to mutsig2_images.part000000000170/SYMPK.5_3929_20000_0.8461_0.0848_0.3302.png
                gene_name: SYMPK
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 35 percent done.
SYN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.198132e-01	ci left: 1.243336e-02	ci right 1.725533e-02	k: 147	n:10000
Cons ci ratio: 6.267260e-02	ci left: 2.723040e-01	ci right 2.900236e-01	k: 2811	n:10000
KS ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
SYN1   10000 perm   2 sec   (4616 perm/sec)   p_kst 1.000000e-03   p_cons 2.811000e-01   p_joint 1.470000e-02

Joint ci ratio: 3.949987e-01	ci left: 3.934731e-03	ci right 5.913431e-03	k: 97	n:20000
Cons ci ratio: 4.408737e-02	ci left: 2.770123e-01	ci right 2.895508e-01	k: 5665	n:20000
KS ci ratio: 8.988600e-01	ci left: 5.334815e-04	ci right 1.422016e-03	k: 18	n:20000
SYN1   20000 perm   5 sec   (3880 perm/sec)   p_kst 9.000000e-04   p_cons 2.832500e-01   p_joint 4.850000e-03

Joint ci ratio: 3.874710e-01	ci left: 2.743017e-03	ci right 4.089323e-03	k: 101	n:30000
Cons ci ratio: 3.600907e-02	ci left: 2.780398e-01	ci right 2.882689e-01	k: 8494	n:30000
KS ci ratio: 7.836602e-01	ci left: 5.126402e-04	ci right 1.190104e-03	k: 24	n:30000
SYN1   30000 perm   9 sec   (3354 perm/sec)   p_kst 8.000000e-04   p_cons 2.831333e-01   p_joint 3.366667e-03

Joint ci ratio: 4.222446e-01	ci left: 1.697716e-03	ci right 2.626935e-03	k: 85	n:40000
Cons ci ratio: 3.131332e-02	ci left: 2.770713e-01	ci right 2.859104e-01	k: 11259	n:40000
KS ci ratio: 7.405418e-01	ci left: 4.448749e-04	ci right 9.819388e-04	k: 27	n:40000
SYN1   40000 perm   11 sec   (3547 perm/sec)   p_kst 6.750000e-04   p_cons 2.814750e-01   p_joint 2.125000e-03

Joint ci ratio: 1.920904e-01	ci left: 7.466281e-03	ci right 9.071597e-03	k: 412	n:50000
Cons ci ratio: 2.801581e-02	ci left: 2.774214e-01	ci right 2.853240e-01	k: 14068	n:50000
KS ci ratio: 7.277073e-01	ci left: 3.721472e-04	ci right 8.092550e-04	k: 28	n:50000
SYN1   50000 perm   14 sec   (3661 perm/sec)   p_kst 5.600000e-04   p_cons 2.813600e-01   p_joint 8.240000e-03

Joint ci ratio: 2.175250e-01	ci left: 4.797767e-03	ci right 5.984182e-03	k: 322	n:60000
Cons ci ratio: 2.554408e-02	ci left: 2.782524e-01	ci right 2.854687e-01	k: 16911	n:60000
KS ci ratio: 6.531319e-01	ci left: 4.063456e-04	ci right 8.111830e-04	k: 35	n:60000
SYN1   60000 perm   16 sec   (3716 perm/sec)   p_kst 5.833333e-04   p_cons 2.818500e-01   p_joint 5.366667e-03

Joint ci ratio: 2.363502e-01	ci left: 3.451799e-03	ci right 4.390059e-03	k: 273	n:70000
Cons ci ratio: 2.360065e-02	ci left: 2.793518e-01	ci right 2.860377e-01	k: 19788	n:70000
KS ci ratio: 6.275230e-01	ci left: 3.841858e-04	ci right 7.450385e-04	k: 38	n:70000
SYN1   70000 perm   19 sec   (3739 perm/sec)   p_kst 5.428571e-04   p_cons 2.826857e-01   p_joint 3.900000e-03

Joint ci ratio: 2.297713e-01	ci left: 3.208600e-03	ci right 4.053027e-03	k: 289	n:80000
Cons ci ratio: 2.203835e-02	ci left: 2.802664e-01	ci right 2.865243e-01	k: 22671	n:80000
KS ci ratio: 5.907960e-01	ci left: 3.890179e-04	ci right 7.239415e-04	k: 43	n:80000
SYN1   80000 perm   21 sec   (3743 perm/sec)   p_kst 5.375000e-04   p_cons 2.833875e-01   p_joint 3.612500e-03

Joint ci ratio: 2.278556e-01	ci left: 2.904406e-03	ci right 3.661502e-03	k: 294	n:90000
Cons ci ratio: 2.077057e-02	ci left: 2.805902e-01	ci right 2.864904e-01	k: 25518	n:90000
KS ci ratio: 5.656492e-01	ci left: 3.837337e-04	ci right 6.943850e-04	k: 47	n:90000
SYN1   90000 perm   24 sec   (3735 perm/sec)   p_kst 5.222222e-04   p_cons 2.835333e-01   p_joint 3.266667e-03

Joint ci ratio: 2.598828e-01	ci left: 1.975207e-03	ci right 2.574248e-03	k: 226	n:100000
Cons ci ratio: 1.965893e-02	ci left: 2.816850e-01	ci right 2.872875e-01	k: 28448	n:100000
KS ci ratio: 5.236827e-01	ci left: 4.143613e-04	ci right 7.158412e-04	k: 55	n:100000
SYN1   100000 perm   27 sec   (3715 perm/sec)   p_kst 5.500000e-04   p_cons 2.844800e-01   p_joint 2.260000e-03

Joint ci ratio: 2.735282e-01	ci left: 1.608963e-03	ci right 2.126957e-03	k: 204	n:110000
Cons ci ratio: 1.874527e-02	ci left: 2.817896e-01	ci right 2.871309e-01	k: 31290	n:110000
KS ci ratio: 5.059295e-01	ci left: 4.083291e-04	ci right 6.918162e-04	k: 59	n:110000
SYN1   110000 perm   30 sec   (3693 perm/sec)   p_kst 5.363636e-04   p_cons 2.844545e-01   p_joint 1.854545e-03

Joint ci ratio: 2.622575e-01	ci left: 1.614813e-03	ci right 2.109758e-03	k: 222	n:120000
Cons ci ratio: 1.795703e-02	ci left: 2.816824e-01	ci right 2.867947e-01	k: 34108	n:120000
KS ci ratio: 4.898673e-01	ci left: 4.034473e-04	ci right 6.716538e-04	k: 63	n:120000
SYN1   120000 perm   33 sec   (3665 perm/sec)   p_kst 5.250000e-04   p_cons 2.842333e-01   p_joint 1.850000e-03

Joint ci ratio: 2.554804e-01	ci left: 1.576912e-03	ci right 2.045758e-03	k: 234	n:130000
Cons ci ratio: 1.724845e-02	ci left: 2.818796e-01	ci right 2.867915e-01	k: 36963	n:130000
KS ci ratio: 4.823943e-01	ci left: 3.859100e-04	ci right 6.372473e-04	k: 65	n:130000
SYN1   130000 perm   36 sec   (3635 perm/sec)   p_kst 5.000000e-04   p_cons 2.843308e-01   p_joint 1.800000e-03

Joint ci ratio: 2.472054e-01	ci left: 1.571363e-03	ci right 2.021103e-03	k: 250	n:140000
Cons ci ratio: 1.664216e-02	ci left: 2.814536e-01	ci right 2.861840e-01	k: 39734	n:140000
KS ci ratio: 4.650988e-01	ci left: 3.897946e-04	ci right 6.316783e-04	k: 70	n:140000
SYN1   140000 perm   39 sec   (3604 perm/sec)   p_kst 5.000000e-04   p_cons 2.838143e-01   p_joint 1.785714e-03

Joint ci ratio: 2.374685e-01	ci left: 1.598110e-03	ci right 2.034841e-03	k: 271	n:150000
Cons ci ratio: 1.608715e-02	ci left: 2.812999e-01	ci right 2.858685e-01	k: 42537	n:150000
KS ci ratio: 4.437357e-01	ci left: 4.051352e-04	ci right 6.415374e-04	k: 77	n:150000
SYN1   150000 perm   42 sec   (3568 perm/sec)   p_kst 5.133333e-04   p_cons 2.835800e-01   p_joint 1.806667e-03

Joint ci ratio: 2.344788e-01	ci left: 1.539386e-03	ci right 1.954004e-03	k: 278	n:160000
Cons ci ratio: 1.556575e-02	ci left: 2.816478e-01	ci right 2.860725e-01	k: 45417	n:160000
KS ci ratio: 4.301629e-01	ci left: 4.076266e-04	ci right 6.361083e-04	k: 82	n:160000
SYN1   160000 perm   45 sec   (3531 perm/sec)   p_kst 5.125000e-04   p_cons 2.838562e-01   p_joint 1.737500e-03

Joint ci ratio: 2.303915e-01	ci left: 1.504229e-03	ci right 1.901310e-03	k: 288	n:170000
Cons ci ratio: 1.509895e-02	ci left: 2.817691e-01	ci right 2.860618e-01	k: 48265	n:170000
KS ci ratio: 4.177640e-01	ci left: 4.099222e-04	ci right 6.312222e-04	k: 87	n:170000
SYN1   170000 perm   49 sec   (3495 perm/sec)   p_kst 5.117647e-04   p_cons 2.839118e-01   p_joint 1.694118e-03

Joint ci ratio: 2.250079e-01	ci left: 1.494001e-03	ci right 1.877889e-03	k: 302	n:180000
Cons ci ratio: 1.466596e-02	ci left: 2.820395e-01	ci right 2.862119e-01	k: 51142	n:180000
KS ci ratio: 3.958709e-01	ci left: 4.370236e-04	ci right 6.573598e-04	k: 97	n:180000
SYN1   180000 perm   52 sec   (3457 perm/sec)   p_kst 5.388889e-04   p_cons 2.841222e-01   p_joint 1.677778e-03

Joint ci ratio: 2.186076e-01	ci left: 1.504845e-03	ci right 1.879043e-03	k: 320	n:190000
Cons ci ratio: 1.427614e-02	ci left: 2.820571e-01	ci right 2.861179e-01	k: 53976	n:190000
KS ci ratio: 3.842814e-01	ci left: 4.425048e-04	ci right 6.574224e-04	k: 103	n:190000
SYN1   190000 perm   56 sec   (3416 perm/sec)   p_kst 5.421053e-04   p_cons 2.840842e-01   p_joint 1.684211e-03

Joint ci ratio: 2.458058e-01	ci left: 1.113994e-03	ci right 1.430745e-03	k: 253	n:200000
Cons ci ratio: 1.391157e-02	ci left: 2.821990e-01	ci right 2.861573e-01	k: 56835	n:200000
KS ci ratio: 3.703005e-01	ci left: 4.565880e-04	ci right 6.683253e-04	k: 111	n:200000
SYN1   200000 perm   59 sec   (3365 perm/sec)   p_kst 5.550000e-04   p_cons 2.841750e-01   p_joint 1.265000e-03

Joint ci ratio: 2.406511e-01	ci left: 1.110135e-03	ci right 1.418182e-03	k: 264	n:210000
Cons ci ratio: 1.359090e-02	ci left: 2.818106e-01	ci right 2.856716e-01	k: 59585	n:210000
KS ci ratio: 3.623023e-01	ci left: 4.564639e-04	ci right 6.624918e-04	k: 116	n:210000
SYN1   210000 perm   63 sec   (3330 perm/sec)   p_kst 5.523810e-04   p_cons 2.837381e-01   p_joint 1.257143e-03

Joint ci ratio: 2.463060e-01	ci left: 1.008450e-03	ci right 1.295863e-03	k: 252	n:220000
Cons ci ratio: 1.326944e-02	ci left: 2.821299e-01	ci right 2.859031e-01	k: 62483	n:220000
KS ci ratio: 3.548009e-01	ci left: 4.563957e-04	ci right 6.571446e-04	k: 121	n:220000
SYN1   220000 perm   67 sec   (3295 perm/sec)   p_kst 5.500000e-04   p_cons 2.840136e-01   p_joint 1.145455e-03

Joint ci ratio: 2.425037e-01	ci left: 9.972559e-04	ci right 1.276430e-03	k: 260	n:230000
Cons ci ratio: 1.297266e-02	ci left: 2.823312e-01	ci right 2.860220e-01	k: 65360	n:230000
KS ci ratio: 3.463851e-01	ci left: 4.603427e-04	ci right 6.569478e-04	k: 127	n:230000
SYN1   230000 perm   71 sec   (3260 perm/sec)   p_kst 5.521739e-04   p_cons 2.841739e-01   p_joint 1.130435e-03

Joint ci ratio: 2.402169e-01	ci left: 9.752757e-04	ci right 1.245339e-03	k: 265	n:240000
Cons ci ratio: 1.269195e-02	ci left: 2.826123e-01	ci right 2.862262e-01	k: 68260	n:240000
KS ci ratio: 3.398122e-01	ci left: 4.602002e-04	ci right 6.521965e-04	k: 132	n:240000
SYN1   240000 perm   74 sec   (3226 perm/sec)   p_kst 5.500000e-04   p_cons 2.844167e-01   p_joint 1.104167e-03

Joint ci ratio: 2.324766e-01	ci left: 1.004004e-03	ci right 1.271777e-03	k: 283	n:250000
Cons ci ratio: 1.243237e-02	ci left: 2.827519e-01	ci right 2.862931e-01	k: 71130	n:250000
KS ci ratio: 3.277124e-01	ci left: 4.784421e-04	ci right 6.694463e-04	k: 142	n:250000
SYN1   250000 perm   78 sec   (3194 perm/sec)   p_kst 5.680000e-04   p_cons 2.845200e-01   p_joint 1.132000e-03

Joint ci ratio: 2.384392e-01	ci left: 9.147130e-04	ci right 1.165854e-03	k: 269	n:260000
Cons ci ratio: 1.219800e-02	ci left: 2.825513e-01	ci right 2.860228e-01	k: 73914	n:260000
KS ci ratio: 3.254469e-01	ci left: 4.671018e-04	ci right 6.520200e-04	k: 144	n:260000
SYN1   260000 perm   82 sec   (3161 perm/sec)   p_kst 5.538462e-04   p_cons 2.842846e-01   p_joint 1.034615e-03

Joint ci ratio: 2.320777e-01	ci left: 9.331174e-04	ci right 1.181496e-03	k: 284	n:270000
Cons ci ratio: 1.196888e-02	ci left: 2.826212e-01	ci right 2.860279e-01	k: 76767	n:270000
KS ci ratio: 3.210497e-01	ci left: 4.634144e-04	ci right 6.438841e-04	k: 148	n:270000
SYN1   270000 perm   86 sec   (3130 perm/sec)   p_kst 5.481481e-04   p_cons 2.843222e-01   p_joint 1.051852e-03

Joint ci ratio: 2.261996e-01	ci left: 9.502896e-04	ci right 1.195940e-03	k: 299	n:280000
Cons ci ratio: 1.175127e-02	ci left: 2.827188e-01	ci right 2.860642e-01	k: 79629	n:280000
KS ci ratio: 3.137632e-01	ci left: 4.698729e-04	ci right 6.478727e-04	k: 155	n:280000
SYN1   280000 perm   90 sec   (3096 perm/sec)   p_kst 5.535714e-04   p_cons 2.843893e-01   p_joint 1.067857e-03

Joint ci ratio: 1.756850e-01	ci left: 1.563231e-03	ci right 1.867556e-03	k: 496	n:290000
Cons ci ratio: 1.185512e-02	ci left: 2.721673e-01	ci right 2.754165e-01	k: 79399	n:290000
KS ci ratio: 3.098172e-01	ci left: 4.663843e-04	ci right 6.404013e-04	k: 159	n:290000
SYN1   290000 perm   95 sec   (3063 perm/sec)   p_kst 5.482759e-04   p_cons 2.737897e-01   p_joint 1.710345e-03

Joint ci ratio: 1.729239e-01	ci left: 1.562129e-03	ci right 1.860962e-03	k: 512	n:300000
Cons ci ratio: 1.165331e-02	ci left: 2.722814e-01	ci right 2.754763e-01	k: 82163	n:300000
KS ci ratio: 3.023494e-01	ci left: 4.754576e-04	ci right 6.477623e-04	k: 167	n:300000
SYN1   300000 perm   99 sec   (3032 perm/sec)   p_kst 5.566667e-04   p_cons 2.738767e-01   p_joint 1.706667e-03

Joint ci ratio: 1.683866e-01	ci left: 1.598206e-03	ci right 1.895104e-03	k: 540	n:310000
Cons ci ratio: 1.146119e-02	ci left: 2.723983e-01	ci right 2.755414e-01	k: 84930	n:310000
KS ci ratio: 2.979484e-01	ci left: 4.750349e-04	ci right 6.442067e-04	k: 172	n:310000
SYN1   310000 perm   104 sec   (2995 perm/sec)   p_kst 5.548387e-04   p_cons 2.739677e-01   p_joint 1.741935e-03

Joint ci ratio: 1.668535e-01	ci left: 1.578200e-03	ci right 1.868443e-03	k: 550	n:320000
Cons ci ratio: 1.128208e-02	ci left: 2.723741e-01	ci right 2.754675e-01	k: 87654	n:320000
KS ci ratio: 2.929121e-01	ci left: 4.775507e-04	ci right 6.442106e-04	k: 178	n:320000
SYN1   320000 perm   108 sec   (2965 perm/sec)   p_kst 5.562500e-04   p_cons 2.739187e-01   p_joint 1.718750e-03

Joint ci ratio: 1.643377e-01	ci left: 1.579756e-03	ci right 1.865472e-03	k: 567	n:330000
Cons ci ratio: 1.111035e-02	ci left: 2.723789e-01	ci right 2.754250e-01	k: 90387	n:330000
KS ci ratio: 2.889052e-01	ci left: 4.771256e-04	ci right 6.409431e-04	k: 183	n:330000
SYN1   330000 perm   112 sec   (2935 perm/sec)   p_kst 5.545455e-04   p_cons 2.739000e-01   p_joint 1.718182e-03

Joint ci ratio: 1.623499e-01	ci left: 1.572785e-03	ci right 1.853464e-03	k: 581	n:340000
Cons ci ratio: 1.094834e-02	ci left: 2.723075e-01	ci right 2.753081e-01	k: 93094	n:340000
KS ci ratio: 2.843068e-01	ci left: 4.794713e-04	ci right 6.410038e-04	k: 189	n:340000
SYN1   340000 perm   117 sec   (2907 perm/sec)   p_kst 5.558824e-04   p_cons 2.738059e-01   p_joint 1.708824e-03

Joint ci ratio: 1.613846e-01	ci left: 1.547037e-03	ci right 1.821320e-03	k: 588	n:350000
Cons ci ratio: 1.078531e-02	ci left: 2.725314e-01	ci right 2.754895e-01	k: 95903	n:350000
KS ci ratio: 2.764157e-01	ci left: 4.949922e-04	ci right 6.563206e-04	k: 200	n:350000
SYN1   350000 perm   122 sec   (2877 perm/sec)   p_kst 5.714286e-04   p_cons 2.740086e-01   p_joint 1.680000e-03

Joint ci ratio: 1.588425e-01	ci left: 1.554727e-03	ci right 1.825617e-03	k: 607	n:360000
Cons ci ratio: 1.063818e-02	ci left: 2.724132e-01	ci right 2.753294e-01	k: 98593	n:360000
KS ci ratio: 2.717242e-01	ci left: 4.993510e-04	ci right 6.588666e-04	k: 207	n:360000
SYN1   360000 perm   126 sec   (2849 perm/sec)   p_kst 5.750000e-04   p_cons 2.738694e-01   p_joint 1.686111e-03

Joint ci ratio: 1.564168e-01	ci left: 1.562034e-03	ci right 1.829651e-03	k: 626	n:370000
Cons ci ratio: 1.049270e-02	ci left: 2.724608e-01	ci right 2.753374e-01	k: 101342	n:370000
KS ci ratio: 2.691492e-01	ci left: 4.959327e-04	ci right 6.526016e-04	k: 211	n:370000
SYN1   370000 perm   131 sec   (2820 perm/sec)   p_kst 5.702703e-04   p_cons 2.738973e-01   p_joint 1.691892e-03

Joint ci ratio: 1.546998e-01	ci left: 1.556335e-03	ci right 1.819778e-03	k: 640	n:380000
Cons ci ratio: 1.035721e-02	ci left: 2.723459e-01	ci right 2.751839e-01	k: 104030	n:380000
KS ci ratio: 2.654194e-01	ci left: 4.976135e-04	ci right 6.522728e-04	k: 217	n:380000
SYN1   380000 perm   136 sec   (2791 perm/sec)   p_kst 5.710526e-04   p_cons 2.737632e-01   p_joint 1.684211e-03

Joint ci ratio: 1.589838e-01	ci left: 1.432663e-03	ci right 1.682529e-03	k: 606	n:390000
Cons ci ratio: 1.022651e-02	ci left: 2.722499e-01	ci right 2.750509e-01	k: 106723	n:390000
KS ci ratio: 2.612576e-01	ci left: 5.016183e-04	ci right 6.546785e-04	k: 224	n:390000
SYN1   390000 perm   141 sec   (2763 perm/sec)   p_kst 5.743590e-04   p_cons 2.736487e-01   p_joint 1.553846e-03

Joint ci ratio: 1.626509e-01	ci left: 1.332057e-03	ci right 1.570259e-03	k: 579	n:400000
Cons ci ratio: 1.010089e-02	ci left: 2.721490e-01	ci right 2.749143e-01	k: 109412	n:400000
KS ci ratio: 2.561831e-01	ci left: 5.101192e-04	ci right 6.622669e-04	k: 233	n:400000
SYN1   400000 perm   146 sec   (2735 perm/sec)   p_kst 5.825000e-04   p_cons 2.735300e-01   p_joint 1.447500e-03

Joint ci ratio: 1.608585e-01	ci left: 1.329992e-03	ci right 1.564950e-03	k: 592	n:410000
Cons ci ratio: 9.985239e-03	ci left: 2.718364e-01	ci right 2.745668e-01	k: 112012	n:410000
KS ci ratio: 2.529605e-01	ci left: 5.113779e-04	ci right 6.616798e-04	k: 239	n:410000
SYN1   410000 perm   151 sec   (2709 perm/sec)   p_kst 5.829268e-04   p_cons 2.732000e-01   p_joint 1.443902e-03

Joint ci ratio: 1.612703e-01	ci left: 1.291468e-03	ci right 1.520261e-03	k: 589	n:420000
Cons ci ratio: 9.867427e-03	ci left: 2.717814e-01	ci right 2.744788e-01	k: 114714	n:420000
KS ci ratio: 2.488465e-01	ci left: 5.170524e-04	ci right 6.661681e-04	k: 247	n:420000
SYN1   420000 perm   156 sec   (2684 perm/sec)   p_kst 5.880952e-04   p_cons 2.731286e-01   p_joint 1.402381e-03

Joint ci ratio: 1.600551e-01	ci left: 1.281522e-03	ci right 1.506678e-03	k: 598	n:430000
Cons ci ratio: 9.751632e-03	ci left: 2.718128e-01	ci right 2.744787e-01	k: 117452	n:430000
KS ci ratio: 2.449268e-01	ci left: 5.224819e-04	ci right 6.704289e-04	k: 255	n:430000
SYN1   430000 perm   162 sec   (2659 perm/sec)   p_kst 5.930233e-04   p_cons 2.731442e-01   p_joint 1.390698e-03

Joint ci ratio: 1.595251e-01	ci left: 1.261123e-03	ci right 1.481891e-03	k: 602	n:440000
Cons ci ratio: 9.640704e-03	ci left: 2.718066e-01	ci right 2.744419e-01	k: 120174	n:440000
KS ci ratio: 2.435050e-01	ci left: 5.170080e-04	ci right 6.624267e-04	k: 258	n:440000
SYN1   440000 perm   167 sec   (2630 perm/sec)   p_kst 5.863636e-04   p_cons 2.731227e-01   p_joint 1.368182e-03

Joint ci ratio: 1.703344e-01	ci left: 1.075425e-03	ci right 1.277753e-03	k: 528	n:450000
Cons ci ratio: 9.534864e-03	ci left: 2.717431e-01	ci right 2.743487e-01	k: 122870	n:450000
KS ci ratio: 2.384918e-01	ci left: 5.284879e-04	ci right 6.736232e-04	k: 269	n:450000
SYN1   450000 perm   173 sec   (2605 perm/sec)   p_kst 5.977778e-04   p_cons 2.730444e-01   p_joint 1.173333e-03

Joint ci ratio: 1.786429e-01	ci left: 9.522472e-04	ci right 1.141085e-03	k: 480	n:460000
Cons ci ratio: 9.437294e-03	ci left: 2.714785e-01	ci right 2.740548e-01	k: 125472	n:460000
KS ci ratio: 2.376144e-01	ci left: 5.210873e-04	ci right 6.635862e-04	k: 271	n:460000
SYN1   460000 perm   178 sec   (2581 perm/sec)   p_kst 5.891304e-04   p_cons 2.727652e-01   p_joint 1.043478e-03

Joint ci ratio: 1.771761e-01	ci left: 9.482497e-04	ci right 1.134585e-03	k: 488	n:470000
Cons ci ratio: 9.336992e-03	ci left: 2.714654e-01	ci right 2.740140e-01	k: 128187	n:470000
KS ci ratio: 2.341948e-01	ci left: 5.260158e-04	ci right 6.674926e-04	k: 279	n:470000
SYN1   470000 perm   184 sec   (2557 perm/sec)   p_kst 5.936170e-04   p_cons 2.727383e-01   p_joint 1.038298e-03

Joint ci ratio: 1.762782e-01	ci left: 9.384500e-04	ci right 1.121825e-03	k: 493	n:480000
Cons ci ratio: 9.241375e-03	ci left: 2.713864e-01	ci right 2.739080e-01	k: 130870	n:480000
KS ci ratio: 2.329509e-01	ci left: 5.209413e-04	ci right 6.602018e-04	k: 282	n:480000
SYN1   480000 perm   189 sec   (2534 perm/sec)   p_kst 5.875000e-04   p_cons 2.726458e-01   p_joint 1.027083e-03

Joint ci ratio: 1.807292e-01	ci left: 8.725037e-04	ci right 1.047769e-03	k: 469	n:490000
Cons ci ratio: 9.144871e-03	ci left: 2.714738e-01	ci right 2.739698e-01	k: 133633	n:490000
KS ci ratio: 2.317266e-01	ci left: 5.160758e-04	ci right 6.532067e-04	k: 285	n:490000
SYN1   490000 perm   195 sec   (2511 perm/sec)   p_kst 5.816327e-04   p_cons 2.727204e-01   p_joint 9.571429e-04

Joint ci ratio: 1.784648e-01	ci left: 8.779750e-04	ci right 1.051891e-03	k: 481	n:500000
Cons ci ratio: 9.053427e-03	ci left: 2.714659e-01	ci right 2.739367e-01	k: 136350	n:500000
KS ci ratio: 2.293334e-01	ci left: 5.170613e-04	ci right 6.528344e-04	k: 291	n:500000
SYN1   500000 perm   201 sec   (2488 perm/sec)   p_kst 5.820000e-04   p_cons 2.727000e-01   p_joint 9.620000e-04

Joint ci ratio: 1.766418e-01	ci left: 8.794963e-04	ci right 1.051744e-03	k: 491	n:510000
Cons ci ratio: 8.964185e-03	ci left: 2.714800e-01	ci right 2.739265e-01	k: 139078	n:510000
KS ci ratio: 2.277790e-01	ci left: 5.143169e-04	ci right 6.483252e-04	k: 295	n:510000
SYN1   510000 perm   207 sec   (2466 perm/sec)   p_kst 5.784314e-04   p_cons 2.727020e-01   p_joint 9.627451e-04

Joint ci ratio: 1.797796e-01	ci left: 8.313469e-04	ci right 9.973717e-04	k: 474	n:520000
Cons ci ratio: 8.880846e-03	ci left: 2.713458e-01	ci right 2.737682e-01	k: 141729	n:520000
KS ci ratio: 2.262558e-01	ci left: 5.116809e-04	ci right 6.439866e-04	k: 299	n:520000
SYN1   520000 perm   213 sec   (2443 perm/sec)   p_kst 5.750000e-04   p_cons 2.725558e-01   p_joint 9.115385e-04

Joint ci ratio: 1.811219e-01	ci left: 8.030491e-04	ci right 9.647513e-04	k: 467	n:530000
Cons ci ratio: 8.799202e-03	ci left: 2.712432e-01	ci right 2.736423e-01	k: 144394	n:530000
KS ci ratio: 2.240266e-01	ci left: 5.127090e-04	ci right 6.437940e-04	k: 305	n:530000
SYN1   530000 perm   219 sec   (2422 perm/sec)   p_kst 5.754717e-04   p_cons 2.724415e-01   p_joint 8.811321e-04

Joint ci ratio: 1.308492e-01	ci left: 1.550669e-03	ci right 1.769548e-03	k: 895	n:540000
Cons ci ratio: 8.718709e-03	ci left: 2.711925e-01	ci right 2.735692e-01	k: 147085	n:540000
KS ci ratio: 2.222186e-01	ci left: 5.119561e-04	ci right 6.416478e-04	k: 310	n:540000
SYN1   540000 perm   225 sec   (2401 perm/sec)   p_kst 5.740741e-04   p_cons 2.723796e-01   p_joint 1.657407e-03

Joint ci ratio: 1.296252e-01	ci left: 1.552377e-03	ci right 1.769290e-03	k: 912	n:550000
Cons ci ratio: 8.639156e-03	ci left: 2.712001e-01	ci right 2.735550e-01	k: 149807	n:550000
KS ci ratio: 2.187290e-01	ci left: 5.198259e-04	ci right 6.491654e-04	k: 320	n:550000
SYN1   550000 perm   231 sec   (2379 perm/sec)   p_kst 5.818182e-04   p_cons 2.723764e-01   p_joint 1.658182e-03

Joint ci ratio: 1.304164e-01	ci left: 1.505650e-03	ci right 1.717417e-03	k: 901	n:560000
Cons ci ratio: 8.560277e-03	ci left: 2.712753e-01	ci right 2.736092e-01	k: 152567	n:560000
KS ci ratio: 2.170453e-01	ci left: 5.189846e-04	ci right 6.469883e-04	k: 325	n:560000
SYN1   560000 perm   237 sec   (2359 perm/sec)   p_kst 5.803571e-04   p_cons 2.724411e-01   p_joint 1.608929e-03

Joint ci ratio: 1.296290e-01	ci left: 1.497905e-03	ci right 1.707213e-03	k: 912	n:570000
Cons ci ratio: 8.483519e-03	ci left: 2.713479e-01	ci right 2.736614e-01	k: 155327	n:570000
KS ci ratio: 2.163833e-01	ci left: 5.131978e-04	ci right 6.393367e-04	k: 327	n:570000
SYN1   570000 perm   244 sec   (2338 perm/sec)   p_kst 5.736842e-04   p_cons 2.725035e-01   p_joint 1.600000e-03

Joint ci ratio: 1.292063e-01	ci left: 1.482089e-03	ci right 1.688458e-03	k: 918	n:580000
Cons ci ratio: 8.409338e-03	ci left: 2.713923e-01	ci right 2.736858e-01	k: 158072	n:580000
KS ci ratio: 2.150762e-01	ci left: 5.108734e-04	ci right 6.355824e-04	k: 331	n:580000
SYN1   580000 perm   250 sec   (2319 perm/sec)   p_kst 5.706897e-04   p_cons 2.725379e-01   p_joint 1.582759e-03

Joint ci ratio: 1.285790e-01	ci left: 1.471730e-03	ci right 1.675587e-03	k: 927	n:590000
Cons ci ratio: 8.340598e-03	ci left: 2.712677e-01	ci right 2.735413e-01	k: 160718	n:590000
KS ci ratio: 2.141115e-01	ci left: 5.070259e-04	ci right 6.301676e-04	k: 334	n:590000
SYN1   590000 perm   257 sec   (2299 perm/sec)   p_kst 5.661017e-04   p_cons 2.724034e-01   p_joint 1.571186e-03

Joint ci ratio: 1.278241e-01	ci left: 1.464946e-03	ci right 1.666582e-03	k: 938	n:600000
Cons ci ratio: 8.272438e-03	ci left: 2.711989e-01	ci right 2.734533e-01	k: 163395	n:600000
KS ci ratio: 2.122194e-01	ci left: 5.080417e-04	ci right 6.301978e-04	k: 340	n:600000
SYN1   600000 perm   263 sec   (2279 perm/sec)   p_kst 5.666667e-04   p_cons 2.723250e-01   p_joint 1.563333e-03

Joint ci ratio: 1.266824e-01	ci left: 1.467913e-03	ci right 1.668016e-03	k: 955	n:610000
Cons ci ratio: 8.202697e-03	ci left: 2.712880e-01	ci right 2.735240e-01	k: 166167	n:610000
KS ci ratio: 2.106806e-01	ci left: 5.074758e-04	ci right 6.284969e-04	k: 345	n:610000
SYN1   610000 perm   270 sec   (2260 perm/sec)   p_kst 5.655738e-04   p_cons 2.724049e-01   p_joint 1.565574e-03

Joint ci ratio: 1.257001e-01	ci left: 1.467667e-03	ci right 1.666070e-03	k: 970	n:620000
Cons ci ratio: 8.136081e-03	ci left: 2.713066e-01	ci right 2.735246e-01	k: 168897	n:620000
KS ci ratio: 2.091747e-01	ci left: 5.069313e-04	ci right 6.268477e-04	k: 350	n:620000
SYN1   620000 perm   277 sec   (2239 perm/sec)   p_kst 5.645161e-04   p_cons 2.724145e-01   p_joint 1.564516e-03

Joint ci ratio: 1.244878e-01	ci left: 1.473586e-03	ci right 1.670726e-03	k: 989	n:630000
Cons ci ratio: 8.072322e-03	ci left: 2.712629e-01	ci right 2.734630e-01	k: 171588	n:630000
KS ci ratio: 2.074094e-01	ci left: 5.079118e-04	ci right 6.269176e-04	k: 356	n:630000
SYN1   630000 perm   284 sec   (2221 perm/sec)   p_kst 5.650794e-04   p_cons 2.723619e-01   p_joint 1.569841e-03

Joint ci ratio: 1.262908e-01	ci left: 1.408180e-03	ci right 1.599503e-03	k: 961	n:640000
Cons ci ratio: 8.012030e-03	ci left: 2.711223e-01	ci right 2.733048e-01	k: 174216	n:640000
KS ci ratio: 2.065439e-01	ci left: 5.044201e-04	ci right 6.220522e-04	k: 359	n:640000
SYN1   640000 perm   291 sec   (2203 perm/sec)   p_kst 5.609375e-04   p_cons 2.722125e-01   p_joint 1.501563e-03

Joint ci ratio: 1.270885e-01	ci left: 1.368637e-03	ci right 1.555851e-03	k: 949	n:650000
Cons ci ratio: 7.951029e-03	ci left: 2.710875e-01	ci right 2.732530e-01	k: 176910	n:650000
KS ci ratio: 2.048438e-01	ci left: 5.054152e-04	ci right 6.221877e-04	k: 365	n:650000
SYN1   650000 perm   298 sec   (2184 perm/sec)   p_kst 5.615385e-04   p_cons 2.721692e-01   p_joint 1.460000e-03

Joint ci ratio: 1.087818e-01	ci left: 1.856794e-03	ci right 2.071857e-03	k: 1295	n:660000
Cons ci ratio: 7.888926e-03	ci left: 2.711779e-01	ci right 2.733271e-01	k: 179686	n:660000
KS ci ratio: 2.026408e-01	ci left: 5.092603e-04	ci right 6.254993e-04	k: 373	n:660000
SYN1   660000 perm   305 sec   (2166 perm/sec)   p_kst 5.651515e-04   p_cons 2.722515e-01   p_joint 1.962121e-03

Joint ci ratio: 1.081581e-01	ci left: 1.850861e-03	ci right 2.063930e-03	k: 1310	n:670000
Cons ci ratio: 7.829641e-03	ci left: 2.711956e-01	ci right 2.733288e-01	k: 182415	n:670000
KS ci ratio: 2.007704e-01	ci left: 5.115796e-04	ci right 6.271381e-04	k: 380	n:670000
SYN1   670000 perm   312 sec   (2149 perm/sec)   p_kst 5.671642e-04   p_cons 2.722612e-01   p_joint 1.955224e-03

Joint ci ratio: 1.140649e-01	ci left: 1.634905e-03	ci right 1.834084e-03	k: 1178	n:680000
Cons ci ratio: 7.771846e-03	ci left: 2.712040e-01	ci right 2.733214e-01	k: 185138	n:680000
KS ci ratio: 2.002461e-01	ci left: 5.068498e-04	ci right 6.210043e-04	k: 382	n:680000
SYN1   680000 perm   319 sec   (2132 perm/sec)   p_kst 5.617647e-04   p_cons 2.722618e-01   p_joint 1.732353e-03

Joint ci ratio: 1.140179e-01	ci left: 1.612618e-03	ci right 1.808995e-03	k: 1179	n:690000
Cons ci ratio: 7.717768e-03	ci left: 2.710863e-01	ci right 2.731880e-01	k: 187774	n:690000
KS ci ratio: 1.989517e-01	ci left: 5.063883e-04	ci right 6.196123e-04	k: 387	n:690000
SYN1   690000 perm   326 sec   (2116 perm/sec)   p_kst 5.608696e-04   p_cons 2.721362e-01   p_joint 1.708696e-03

Joint ci ratio: 1.133477e-01	ci left: 1.609012e-03	ci right 1.803721e-03	k: 1193	n:700000
Cons ci ratio: 7.663448e-03	ci left: 2.710420e-01	ci right 2.731285e-01	k: 190459	n:700000
KS ci ratio: 1.976822e-01	ci left: 5.059424e-04	ci right 6.182578e-04	k: 392	n:700000
SYN1   700000 perm   333 sec   (2099 perm/sec)   p_kst 5.600000e-04   p_cons 2.720843e-01   p_joint 1.704286e-03

Joint ci ratio: 1.124100e-01	ci left: 1.613723e-03	ci right 1.807280e-03	k: 1213	n:710000
Cons ci ratio: 7.607905e-03	ci left: 2.711213e-01	ci right 2.731932e-01	k: 193231	n:710000
KS ci ratio: 1.949717e-01	ci left: 5.135481e-04	ci right 6.258032e-04	k: 403	n:710000
SYN1   710000 perm   341 sec   (2083 perm/sec)   p_kst 5.676056e-04   p_cons 2.721563e-01   p_joint 1.708451e-03

Joint ci ratio: 1.117220e-01	ci left: 1.611560e-03	ci right 1.803596e-03	k: 1228	n:720000
Cons ci ratio: 7.555512e-03	ci left: 2.710958e-01	ci right 2.731532e-01	k: 195929	n:720000
KS ci ratio: 1.930691e-01	ci left: 5.169870e-04	ci right 6.287616e-04	k: 411	n:720000
SYN1   720000 perm   348 sec   (2067 perm/sec)   p_kst 5.708333e-04   p_cons 2.721236e-01   p_joint 1.705556e-03

Joint ci ratio: 1.124126e-01	ci left: 1.569510e-03	ci right 1.757768e-03	k: 1213	n:730000
Cons ci ratio: 7.504862e-03	ci left: 2.710355e-01	ci right 2.730786e-01	k: 198601	n:730000
KS ci ratio: 1.914494e-01	ci left: 5.190325e-04	ci right 6.301984e-04	k: 418	n:730000
SYN1   730000 perm   356 sec   (2052 perm/sec)   p_kst 5.726027e-04   p_cons 2.720562e-01   p_joint 1.661644e-03

Joint ci ratio: 1.116791e-01	ci left: 1.569316e-03	ci right 1.756241e-03	k: 1229	n:740000
Cons ci ratio: 7.453919e-03	ci left: 2.710457e-01	ci right 2.730750e-01	k: 201324	n:740000
KS ci ratio: 1.894254e-01	ci left: 5.236010e-04	ci right 6.344233e-04	k: 427	n:740000
SYN1   740000 perm   363 sec   (2036 perm/sec)   p_kst 5.770270e-04   p_cons 2.720595e-01   p_joint 1.660811e-03

Joint ci ratio: 1.109598e-01	ci left: 1.569131e-03	ci right 1.754752e-03	k: 1245	n:750000
Cons ci ratio: 7.403751e-03	ci left: 2.710690e-01	ci right 2.730847e-01	k: 204057	n:750000
KS ci ratio: 1.892051e-01	ci left: 5.178897e-04	ci right 6.273610e-04	k: 428	n:750000
SYN1   750000 perm   371 sec   (2021 perm/sec)   p_kst 5.706667e-04   p_cons 2.720760e-01   p_joint 1.660000e-03

Joint ci ratio: 1.101668e-01	ci left: 1.571514e-03	ci right 1.756002e-03	k: 1263	n:760000
Cons ci ratio: 7.355388e-03	ci left: 2.710484e-01	ci right 2.730507e-01	k: 206757	n:760000
KS ci ratio: 1.881122e-01	ci left: 5.173435e-04	ci right 6.259956e-04	k: 433	n:760000
SYN1   760000 perm   379 sec   (2005 perm/sec)   p_kst 5.697368e-04   p_cons 2.720487e-01   p_joint 1.661842e-03

Joint ci ratio: 1.093906e-01	ci left: 1.573839e-03	ci right 1.757215e-03	k: 1281	n:770000
Cons ci ratio: 7.306572e-03	ci left: 2.711036e-01	ci right 2.730929e-01	k: 209515	n:770000
KS ci ratio: 1.866131e-01	ci left: 5.192894e-04	ci right 6.273825e-04	k: 440	n:770000
SYN1   770000 perm   387 sec   (1990 perm/sec)   p_kst 5.714286e-04   p_cons 2.720974e-01   p_joint 1.663636e-03

Joint ci ratio: 1.084635e-01	ci left: 1.581099e-03	ci right 1.763659e-03	k: 1303	n:780000
Cons ci ratio: 7.259607e-03	ci left: 2.711087e-01	ci right 2.730853e-01	k: 212235	n:780000
KS ci ratio: 1.857727e-01	ci left: 5.175209e-04	ci right 6.247062e-04	k: 444	n:780000
SYN1   780000 perm   395 sec   (1975 perm/sec)   p_kst 5.692308e-04   p_cons 2.720962e-01   p_joint 1.670513e-03

Joint ci ratio: 1.076817e-01	ci left: 1.584486e-03	ci right 1.766035e-03	k: 1322	n:790000
Cons ci ratio: 7.215242e-03	ci left: 2.710202e-01	ci right 2.729840e-01	k: 214881	n:790000
KS ci ratio: 1.843284e-01	ci left: 5.194204e-04	ci right 6.260692e-04	k: 451	n:790000
SYN1   790000 perm   403 sec   (1961 perm/sec)   p_kst 5.708861e-04   p_cons 2.720013e-01   p_joint 1.673418e-03

Joint ci ratio: 1.074391e-01	ci left: 1.571977e-03	ci right 1.751662e-03	k: 1328	n:800000
Cons ci ratio: 7.169938e-03	ci left: 2.710301e-01	ci right 2.729816e-01	k: 217604	n:800000
KS ci ratio: 1.839224e-01	ci left: 5.153123e-04	ci right 6.208586e-04	k: 453	n:800000
SYN1   800000 perm   411 sec   (1947 perm/sec)   p_kst 5.662500e-04   p_cons 2.720050e-01   p_joint 1.660000e-03

Joint ci ratio: 1.065209e-01	ci left: 1.580206e-03	ci right 1.759190e-03	k: 1351	n:810000
Cons ci ratio: 7.126631e-03	ci left: 2.709756e-01	ci right 2.729149e-01	k: 220275	n:810000
KS ci ratio: 1.825205e-01	ci left: 5.171961e-04	ci right 6.222315e-04	k: 460	n:810000
SYN1   810000 perm   419 sec   (1932 perm/sec)   p_kst 5.679012e-04   p_cons 2.719444e-01   p_joint 1.667901e-03

Joint ci ratio: 1.087607e-01	ci left: 1.495664e-03	ci right 1.668863e-03	k: 1296	n:820000
Cons ci ratio: 7.081897e-03	ci left: 2.710456e-01	ci right 2.729731e-01	k: 223047	n:820000
KS ci ratio: 1.817340e-01	ci left: 5.155445e-04	ci right 6.197436e-04	k: 464	n:820000
SYN1   820000 perm   427 sec   (1919 perm/sec)   p_kst 5.658537e-04   p_cons 2.720085e-01   p_joint 1.580488e-03

Joint ci ratio: 1.083027e-01	ci left: 1.490537e-03	ci right 1.662369e-03	k: 1307	n:830000
Cons ci ratio: 7.039536e-03	ci left: 2.710272e-01	ci right 2.729430e-01	k: 225747	n:830000
KS ci ratio: 1.809575e-01	ci left: 5.139335e-04	ci right 6.173146e-04	k: 468	n:830000
SYN1   830000 perm   436 sec   (1905 perm/sec)   p_kst 5.638554e-04   p_cons 2.719843e-01   p_joint 1.574699e-03

Joint ci ratio: 1.079325e-01	ci left: 1.483217e-03	ci right 1.653583e-03	k: 1316	n:840000
Cons ci ratio: 6.999336e-03	ci left: 2.709297e-01	ci right 2.728338e-01	k: 228380	n:840000
KS ci ratio: 1.798110e-01	ci left: 5.146357e-04	ci right 6.174307e-04	k: 474	n:840000
SYN1   840000 perm   444 sec   (1891 perm/sec)   p_kst 5.642857e-04   p_cons 2.718810e-01   p_joint 1.566667e-03

Joint ci ratio: 1.096135e-01	ci left: 1.419986e-03	ci right 1.585794e-03	k: 1276	n:850000
Cons ci ratio: 6.957418e-03	ci left: 2.709708e-01	ci right 2.728637e-01	k: 231129	n:850000
KS ci ratio: 1.786859e-01	ci left: 5.153232e-04	ci right 6.175420e-04	k: 480	n:850000
SYN1   850000 perm   453 sec   (1878 perm/sec)   p_kst 5.647059e-04   p_cons 2.719165e-01   p_joint 1.501176e-03

Joint ci ratio: 1.088067e-01	ci left: 1.424964e-03	ci right 1.590050e-03	k: 1295	n:860000
Cons ci ratio: 6.918255e-03	ci left: 2.708959e-01	ci right 2.727777e-01	k: 233779	n:860000
KS ci ratio: 1.772180e-01	ci left: 5.182192e-04	ci right 6.200774e-04	k: 488	n:860000
SYN1   860000 perm   461 sec   (1865 perm/sec)   p_kst 5.674419e-04   p_cons 2.718360e-01   p_joint 1.505814e-03

Joint ci ratio: 1.083067e-01	ci left: 1.422004e-03	ci right 1.585942e-03	k: 1307	n:870000
Cons ci ratio: 6.877689e-03	ci left: 2.709411e-01	ci right 2.728121e-01	k: 236532	n:870000
KS ci ratio: 1.763190e-01	ci left: 5.177555e-04	ci right 6.189512e-04	k: 493	n:870000
SYN1   870000 perm   470 sec   (1852 perm/sec)   p_kst 5.666667e-04   p_cons 2.718759e-01   p_joint 1.502299e-03

Joint ci ratio: 1.159233e-01	ci left: 1.222485e-03	ci right 1.374010e-03	k: 1141	n:880000
Cons ci ratio: 6.838455e-03	ci left: 2.709490e-01	ci right 2.728093e-01	k: 239253	n:880000
KS ci ratio: 1.752578e-01	ci left: 5.183901e-04	ci right 6.190356e-04	k: 499	n:880000
SYN1   880000 perm   478 sec   (1840 perm/sec)   p_kst 5.670455e-04   p_cons 2.718784e-01   p_joint 1.296591e-03

Joint ci ratio: 1.153191e-01	ci left: 1.221842e-03	ci right 1.372445e-03	k: 1153	n:890000
Cons ci ratio: 6.800561e-03	ci left: 2.709174e-01	ci right 2.727672e-01	k: 241939	n:890000
KS ci ratio: 1.743881e-01	ci left: 5.179376e-04	ci right 6.179437e-04	k: 504	n:890000
SYN1   890000 perm   487 sec   (1827 perm/sec)   p_kst 5.662921e-04   p_cons 2.718416e-01   p_joint 1.295506e-03

Joint ci ratio: 1.189348e-01	ci left: 1.133842e-03	ci right 1.278288e-03	k: 1084	n:900000
Cons ci ratio: 6.582186e-03	ci left: 2.817520e-01	ci right 2.836138e-01	k: 254414	n:900000
KS ci ratio: 1.730228e-01	ci left: 5.206853e-04	ci right 6.203525e-04	k: 512	n:900000
SYN1   900000 perm   496 sec   (1814 perm/sec)   p_kst 5.688889e-04   p_cons 2.826822e-01   p_joint 1.204444e-03

Joint ci ratio: 1.183906e-01	ci left: 1.132045e-03	ci right 1.275556e-03	k: 1094	n:910000
Cons ci ratio: 6.544870e-03	ci left: 2.818221e-01	ci right 2.836738e-01	k: 257300	n:910000
KS ci ratio: 1.723523e-01	ci left: 5.191690e-04	ci right 6.181209e-04	k: 516	n:910000
SYN1   910000 perm   505 sec   (1802 perm/sec)   p_kst 5.670330e-04   p_cons 2.827473e-01   p_joint 1.202198e-03

Joint ci ratio: 1.267159e-01	ci left: 9.732742e-04	ci right 1.105986e-03	k: 955	n:920000
Cons ci ratio: 6.508811e-03	ci left: 2.818516e-01	ci right 2.836932e-01	k: 260150	n:920000
KS ci ratio: 1.708712e-01	ci left: 5.228884e-04	ci right 6.216045e-04	k: 525	n:920000
SYN1   920000 perm   514 sec   (1790 perm/sec)   p_kst 5.706522e-04   p_cons 2.827717e-01   p_joint 1.038043e-03

Joint ci ratio: 1.261237e-01	ci left: 9.721802e-04	ci right 1.104077e-03	k: 964	n:930000
Cons ci ratio: 6.474198e-03	ci left: 2.818268e-01	ci right 2.836584e-01	k: 262950	n:930000
KS ci ratio: 1.707094e-01	ci left: 5.182952e-04	ci right 6.160419e-04	k: 526	n:930000
SYN1   930000 perm   523 sec   (1778 perm/sec)   p_kst 5.655914e-04   p_cons 2.827419e-01   p_joint 1.036559e-03

Joint ci ratio: 1.253467e-01	ci left: 9.742024e-04	ci right 1.105499e-03	k: 976	n:940000
Cons ci ratio: 6.441518e-03	ci left: 2.817154e-01	ci right 2.835370e-01	k: 265668	n:940000
KS ci ratio: 1.692698e-01	ci left: 5.219486e-04	ci right 6.194696e-04	k: 535	n:940000
SYN1   940000 perm   532 sec   (1766 perm/sec)   p_kst 5.691489e-04   p_cons 2.826255e-01   p_joint 1.038298e-03

Joint ci ratio: 1.261251e-01	ci left: 9.517126e-04	ci right 1.080835e-03	k: 964	n:950000
Cons ci ratio: 6.406299e-03	ci left: 2.817978e-01	ci right 2.836099e-01	k: 268568	n:950000
KS ci ratio: 1.686419e-01	ci left: 5.204869e-04	ci right 6.173373e-04	k: 539	n:950000
SYN1   950000 perm   542 sec   (1754 perm/sec)   p_kst 5.673684e-04   p_cons 2.827032e-01   p_joint 1.014737e-03

Joint ci ratio: 1.264541e-01	ci left: 9.367547e-04	ci right 1.064204e-03	k: 959	n:960000
Cons ci ratio: 6.372175e-03	ci left: 2.818451e-01	ci right 2.836478e-01	k: 271436	n:960000
KS ci ratio: 1.678666e-01	ci left: 5.200541e-04	ci right 6.163342e-04	k: 544	n:960000
SYN1   960000 perm   551 sec   (1743 perm/sec)   p_kst 5.666667e-04   p_cons 2.827458e-01   p_joint 9.989583e-04

Joint ci ratio: 1.258006e-01	ci left: 9.370815e-04	ci right 1.063867e-03	k: 969	n:970000
Cons ci ratio: 6.338317e-03	ci left: 2.819090e-01	ci right 2.837026e-01	k: 274321	n:970000
KS ci ratio: 1.667987e-01	ci left: 5.216071e-04	ci right 6.174986e-04	k: 551	n:970000
SYN1   970000 perm   560 sec   (1732 perm/sec)   p_kst 5.680412e-04   p_cons 2.828052e-01   p_joint 9.989691e-04

Joint ci ratio: 1.274560e-01	ci left: 9.028162e-04	ci right 1.026694e-03	k: 944	n:980000
Cons ci ratio: 6.305421e-03	ci left: 2.819442e-01	ci right 2.837286e-01	k: 277179	n:980000
KS ci ratio: 1.656028e-01	ci left: 5.241083e-04	ci right 6.197000e-04	k: 559	n:980000
SYN1   980000 perm   569 sec   (1721 perm/sec)   p_kst 5.704082e-04   p_cons 2.828357e-01   p_joint 9.632653e-04

Joint ci ratio: 1.264560e-01	ci left: 9.083674e-04	ci right 1.031956e-03	k: 959	n:990000
Cons ci ratio: 6.273110e-03	ci left: 2.819735e-01	ci right 2.837489e-01	k: 280032	n:990000
KS ci ratio: 1.647227e-01	ci left: 5.246244e-04	ci right 6.197513e-04	k: 565	n:990000
SYN1   990000 perm   579 sec   (1710 perm/sec)   p_kst 5.707071e-04   p_cons 2.828606e-01   p_joint 9.686869e-04

Joint ci ratio: 1.254792e-01	ci left: 9.138112e-04	ci right 1.037109e-03	k: 974	n:1000000
Cons ci ratio: 6.241229e-03	ci left: 2.820064e-01	ci right 2.837729e-01	k: 282889	n:1000000
KS ci ratio: 1.638565e-01	ci left: 5.251315e-04	ci right 6.198002e-04	k: 571	n:1000000
SYN1   1000000 perm   588 sec   (1699 perm/sec)   p_kst 5.710000e-04   p_cons 2.828890e-01   p_joint 9.740000e-04

Joint ci ratio: 1.247772e-01	ci left: 9.153138e-04	ci right 1.038072e-03	k: 985	n:1010000
Cons ci ratio: 6.209132e-03	ci left: 2.820840e-01	ci right 2.838420e-01	k: 285792	n:1010000
KS ci ratio: 1.624423e-01	ci left: 5.294290e-04	ci right 6.239684e-04	k: 581	n:1010000
SYN1   1010000 perm   598 sec   (1688 perm/sec)   p_kst 5.752475e-04   p_cons 2.829624e-01   p_joint 9.752475e-04

Joint ci ratio: 1.238385e-01	ci left: 9.205889e-04	ci right 1.043058e-03	k: 1000	n:1020000
Cons ci ratio: 6.178615e-03	ci left: 2.820887e-01	ci right 2.838380e-01	k: 288622	n:1020000
KS ci ratio: 1.605225e-01	ci left: 5.374096e-04	ci right 6.321305e-04	k: 595	n:1020000
SYN1   1020000 perm   608 sec   (1677 perm/sec)   p_kst 5.833333e-04   p_cons 2.829627e-01   p_joint 9.803922e-04

Joint ci ratio: 1.233467e-01	ci left: 9.191779e-04	ci right 1.040938e-03	k: 1008	n:1030000
Cons ci ratio: 6.148278e-03	ci left: 2.821108e-01	ci right 2.838516e-01	k: 291470	n:1030000
KS ci ratio: 1.601202e-01	ci left: 5.349877e-04	ci right 6.290227e-04	k: 598	n:1030000
SYN1   1030000 perm   618 sec   (1668 perm/sec)   p_kst 5.805825e-04   p_cons 2.829806e-01   p_joint 9.786408e-04

Joint ci ratio: 1.223201e-01	ci left: 9.261838e-04	ci right 1.047777e-03	k: 1025	n:1040000
Cons ci ratio: 6.117949e-03	ci left: 2.821613e-01	ci right 2.838938e-01	k: 294348	n:1040000
KS ci ratio: 1.589304e-01	ci left: 5.381520e-04	ci right 6.319734e-04	k: 607	n:1040000
SYN1   1040000 perm   627 sec   (1658 perm/sec)   p_kst 5.836538e-04   p_cons 2.830269e-01   p_joint 9.855769e-04

Joint ci ratio: 1.215523e-01	ci left: 9.293664e-04	ci right 1.050556e-03	k: 1038	n:1050000
Cons ci ratio: 6.087979e-03	ci left: 2.822165e-01	ci right 2.839408e-01	k: 297232	n:1050000
KS ci ratio: 1.578949e-01	ci left: 5.403439e-04	ci right 6.338753e-04	k: 615	n:1050000
SYN1   1050000 perm   637 sec   (1648 perm/sec)   p_kst 5.857143e-04   p_cons 2.830781e-01   p_joint 9.885714e-04

Joint ci ratio: 1.212611e-01	ci left: 9.251724e-04	ci right 1.045506e-03	k: 1043	n:1060000
Cons ci ratio: 6.058924e-03	ci left: 2.822387e-01	ci right 2.839549e-01	k: 300082	n:1060000
KS ci ratio: 1.567537e-01	ci left: 5.434027e-04	ci right 6.367199e-04	k: 624	n:1060000
SYN1   1060000 perm   647 sec   (1638 perm/sec)   p_kst 5.886792e-04   p_cons 2.830962e-01   p_joint 9.839623e-04

Joint ci ratio: 1.207419e-01	ci left: 9.246826e-04	ci right 1.044400e-03	k: 1052	n:1070000
Cons ci ratio: 6.029878e-03	ci left: 2.822876e-01	ci right 2.839958e-01	k: 302961	n:1070000
KS ci ratio: 1.558831e-01	ci left: 5.446103e-04	ci right 6.375669e-04	k: 631	n:1070000
SYN1   1070000 perm   657 sec   (1628 perm/sec)   p_kst 5.897196e-04   p_cons 2.831411e-01   p_joint 9.831776e-04

Joint ci ratio: 1.196107e-01	ci left: 9.340828e-04	ci right 1.053805e-03	k: 1072	n:1080000
Cons ci ratio: 6.002614e-03	ci left: 2.822431e-01	ci right 2.839433e-01	k: 305740	n:1080000
KS ci ratio: 1.550268e-01	ci left: 5.457970e-04	ci right 6.383969e-04	k: 638	n:1080000
SYN1   1080000 perm   667 sec   (1618 perm/sec)   p_kst 5.907407e-04   p_cons 2.830926e-01   p_joint 9.925926e-04

Joint ci ratio: 1.222037e-01	ci left: 8.854759e-04	ci right 1.001606e-03	k: 1027	n:1090000
Cons ci ratio: 5.975447e-03	ci left: 2.822177e-01	ci right 2.839100e-01	k: 308539	n:1090000
KS ci ratio: 1.539463e-01	ci left: 5.487275e-04	ci right 6.411158e-04	k: 647	n:1090000
SYN1   1090000 perm   678 sec   (1609 perm/sec)   p_kst 5.935780e-04   p_cons 2.830633e-01   p_joint 9.422018e-04

Joint ci ratio: 1.230458e-01	ci left: 8.650887e-04	ci right 9.793837e-04	k: 1013	n:1100000
Cons ci ratio: 5.948246e-03	ci left: 2.822201e-01	ci right 2.839047e-01	k: 311368	n:1100000
KS ci ratio: 1.533558e-01	ci left: 5.481097e-04	ci right 6.400076e-04	k: 652	n:1100000
SYN1   1100000 perm   688 sec   (1599 perm/sec)   p_kst 5.927273e-04   p_cons 2.830618e-01   p_joint 9.209091e-04

Joint ci ratio: 1.226233e-01	ci left: 8.634076e-04	ci right 9.770604e-04	k: 1020	n:1110000
Cons ci ratio: 5.920703e-03	ci left: 2.822710e-01	ci right 2.839481e-01	k: 314251	n:1110000
KS ci ratio: 1.528884e-01	ci left: 5.466373e-04	ci right 6.379833e-04	k: 656	n:1110000
SYN1   1110000 perm   698 sec   (1590 perm/sec)   p_kst 5.909910e-04   p_cons 2.831090e-01   p_joint 9.189189e-04

Joint ci ratio: 1.265952e-01	ci left: 8.011999e-04	ci right 9.103366e-04	k: 957	n:1120000
Cons ci ratio: 5.894356e-03	ci left: 2.822649e-01	ci right 2.839344e-01	k: 317071	n:1120000
KS ci ratio: 1.519659e-01	ci left: 5.486271e-04	ci right 6.397021e-04	k: 664	n:1120000
SYN1   1120000 perm   709 sec   (1580 perm/sec)   p_kst 5.928571e-04   p_cons 2.830991e-01   p_joint 8.544643e-04

Joint ci ratio: 1.260047e-01	ci left: 8.018226e-04	ci right 9.104966e-04	k: 966	n:1130000
Cons ci ratio: 5.867961e-03	ci left: 2.822863e-01	ci right 2.839485e-01	k: 319922	n:1130000
KS ci ratio: 1.511722e-01	ci left: 5.497317e-04	ci right 6.404704e-04	k: 671	n:1130000
SYN1   1130000 perm   719 sec   (1571 perm/sec)   p_kst 5.938053e-04   p_cons 2.831168e-01   p_joint 8.548673e-04

Joint ci ratio: 1.252299e-01	ci left: 8.049847e-04	ci right 9.133666e-04	k: 978	n:1140000
Cons ci ratio: 5.842359e-03	ci left: 2.822766e-01	ci right 2.839315e-01	k: 322738	n:1140000
KS ci ratio: 1.499496e-01	ci left: 5.541952e-04	ci right 6.448645e-04	k: 682	n:1140000
SYN1   1140000 perm   730 sec   (1562 perm/sec)   p_kst 5.982456e-04   p_cons 2.831035e-01   p_joint 8.578947e-04

Joint ci ratio: 1.245321e-01	ci left: 8.072513e-04	ci right 9.152881e-04	k: 989	n:1150000
Cons ci ratio: 5.815782e-03	ci left: 2.823584e-01	ci right 2.840062e-01	k: 325659	n:1150000
KS ci ratio: 1.492953e-01	ci left: 5.543982e-04	ci right 6.446696e-04	k: 688	n:1150000
SYN1   1150000 perm   740 sec   (1553 perm/sec)   p_kst 5.982609e-04   p_cons 2.831817e-01   p_joint 8.600000e-04

Joint ci ratio: 1.240942e-01	ci left: 8.061390e-04	ci right 9.136198e-04	k: 996	n:1160000
Cons ci ratio: 5.790473e-03	ci left: 2.823750e-01	ci right 2.840157e-01	k: 328506	n:1160000
KS ci ratio: 1.488639e-01	ci left: 5.529385e-04	ci right 6.426889e-04	k: 692	n:1160000
SYN1   1160000 perm   751 sec   (1545 perm/sec)   p_kst 5.965517e-04   p_cons 2.831948e-01   p_joint 8.586207e-04

Joint ci ratio: 1.558870e-01	ci left: 4.980615e-04	ci right 5.830752e-04	k: 631	n:1170000
Cons ci ratio: 6.090685e-03	ci left: 2.606731e-01	ci right 2.622665e-01	k: 305919	n:1170000
KS ci ratio: 1.479064e-01	ci left: 5.556193e-04	ci right 6.451735e-04	k: 701	n:1170000
SYN1   1170000 perm   761 sec   (1537 perm/sec)   p_kst 5.991453e-04   p_cons 2.614692e-01   p_joint 5.393162e-04

Joint ci ratio: 1.553962e-01	ci left: 4.970984e-04	ci right 5.816557e-04	k: 635	n:1180000
Cons ci ratio: 6.065204e-03	ci left: 2.606522e-01	ci right 2.622388e-01	k: 308505	n:1180000
KS ci ratio: 1.473825e-01	ci left: 5.549914e-04	ci right 6.440996e-04	k: 706	n:1180000
SYN1   1180000 perm   772 sec   (1528 perm/sec)   p_kst 5.983051e-04   p_cons 2.614449e-01   p_joint 5.381356e-04

Joint ci ratio: 1.550311e-01	ci left: 4.953442e-04	ci right 5.793867e-04	k: 638	n:1190000
Cons ci ratio: 6.039554e-03	ci left: 2.606627e-01	ci right 2.622426e-01	k: 311128	n:1190000
KS ci ratio: 1.470710e-01	ci left: 5.527557e-04	ci right 6.413009e-04	k: 709	n:1190000
SYN1   1190000 perm   783 sec   (1519 perm/sec)   p_kst 5.957983e-04   p_cons 2.614521e-01   p_joint 5.361345e-04

Joint ci ratio: 1.539505e-01	ci left: 4.984264e-04	ci right 5.823481e-04	k: 647	n:1200000
Cons ci ratio: 6.014772e-03	ci left: 2.606381e-01	ci right 2.622113e-01	k: 313709	n:1200000
KS ci ratio: 1.464535e-01	ci left: 5.529658e-04	ci right 6.411402e-04	k: 715	n:1200000
SYN1   1200000 perm   795 sec   (1510 perm/sec)   p_kst 5.958333e-04   p_cons 2.614242e-01   p_joint 5.391667e-04

Joint ci ratio: 1.531255e-01	ci left: 4.998701e-04	ci right 5.835425e-04	k: 654	n:1210000
Cons ci ratio: 5.989984e-03	ci left: 2.606338e-01	ci right 2.622004e-01	k: 316314	n:1210000
KS ci ratio: 1.457427e-01	ci left: 5.539696e-04	ci right 6.418380e-04	k: 722	n:1210000
SYN1   1210000 perm   806 sec   (1501 perm/sec)   p_kst 5.966942e-04   p_cons 2.614165e-01   p_joint 5.404959e-04

Joint ci ratio: 1.523137e-01	ci left: 5.012913e-04	ci right 5.847161e-04	k: 661	n:1220000
Cons ci ratio: 5.965995e-03	ci left: 2.605975e-01	ci right 2.621577e-01	k: 318880	n:1220000
KS ci ratio: 1.449429e-01	ci left: 5.557478e-04	ci right 6.433726e-04	k: 730	n:1220000
SYN1   1220000 perm   818 sec   (1491 perm/sec)   p_kst 5.983607e-04   p_cons 2.613770e-01   p_joint 5.418033e-04

Joint ci ratio: 1.519699e-01	ci left: 4.995619e-04	ci right 5.824942e-04	k: 664	n:1230000
Cons ci ratio: 5.941715e-03	ci left: 2.605993e-01	ci right 2.621531e-01	k: 321492	n:1230000
KS ci ratio: 1.442538e-01	ci left: 5.567147e-04	ci right 6.440387e-04	k: 737	n:1230000
SYN1   1230000 perm   829 sec   (1483 perm/sec)   p_kst 5.991870e-04   p_cons 2.613756e-01   p_joint 5.398374e-04

Joint ci ratio: 1.535965e-01	ci left: 4.846742e-04	ci right 5.660754e-04	k: 650	n:1240000
Cons ci ratio: 5.918051e-03	ci left: 2.605800e-01	ci right 2.621275e-01	k: 324078	n:1240000
KS ci ratio: 1.437677e-01	ci left: 5.561120e-04	ci right 6.430223e-04	k: 742	n:1240000
SYN1   1240000 perm   840 sec   (1476 perm/sec)   p_kst 5.983871e-04   p_cons 2.613532e-01   p_joint 5.241935e-04

Joint ci ratio: 1.531269e-01	ci left: 4.838739e-04	ci right 5.648695e-04	k: 654	n:1250000
Cons ci ratio: 5.894045e-03	ci left: 2.606019e-01	ci right 2.621432e-01	k: 326715	n:1250000
KS ci ratio: 1.432864e-01	ci left: 5.555195e-04	ci right 6.420217e-04	k: 747	n:1250000
SYN1   1250000 perm   851 sec   (1468 perm/sec)   p_kst 5.976000e-04   p_cons 2.613720e-01   p_joint 5.232000e-04

Joint ci ratio: 1.528938e-01	ci left: 4.815602e-04	ci right 5.620345e-04	k: 656	n:1260000
Cons ci ratio: 5.871342e-03	ci left: 2.605568e-01	ci right 2.620919e-01	k: 329268	n:1260000
KS ci ratio: 1.430955e-01	ci left: 5.526410e-04	ci right 6.385705e-04	k: 749	n:1260000
SYN1   1260000 perm   863 sec   (1461 perm/sec)   p_kst 5.944444e-04   p_cons 2.613238e-01   p_joint 5.206349e-04

Joint ci ratio: 1.309849e-01	ci left: 6.585582e-04	ci right 7.516173e-04	k: 894	n:1270000
Cons ci ratio: 5.848220e-03	ci left: 2.605573e-01	ci right 2.620863e-01	k: 331878	n:1270000
KS ci ratio: 1.426209e-01	ci left: 5.520857e-04	ci right 6.376200e-04	k: 754	n:1270000
SYN1   1270000 perm   874 sec   (1453 perm/sec)   p_kst 5.937008e-04   p_cons 2.613213e-01   p_joint 7.039370e-04

Joint ci ratio: 1.333160e-01	ci left: 6.299944e-04	ci right 7.207271e-04	k: 863	n:1280000
Cons ci ratio: 5.825038e-03	ci left: 2.605796e-01	ci right 2.621027e-01	k: 334516	n:1280000
KS ci ratio: 1.421511e-01	ci left: 5.515396e-04	ci right 6.366840e-04	k: 759	n:1280000
SYN1   1280000 perm   886 sec   (1445 perm/sec)   p_kst 5.929687e-04   p_cons 2.613406e-01   p_joint 6.742188e-04

Joint ci ratio: 1.327792e-01	ci left: 6.303565e-04	ci right 7.207469e-04	k: 870	n:1290000
Cons ci ratio: 5.801804e-03	ci left: 2.606233e-01	ci right 2.621405e-01	k: 337182	n:1290000
KS ci ratio: 1.416858e-01	ci left: 5.510025e-04	ci right 6.357620e-04	k: 764	n:1290000
SYN1   1290000 perm   898 sec   (1437 perm/sec)   p_kst 5.922481e-04   p_cons 2.613814e-01   p_joint 6.744186e-04

Joint ci ratio: 1.334714e-01	ci left: 6.188148e-04	ci right 7.080495e-04	k: 861	n:1300000
Cons ci ratio: 5.778834e-03	ci left: 2.606671e-01	ci right 2.621786e-01	k: 339849	n:1300000
KS ci ratio: 1.408595e-01	ci left: 5.534424e-04	ci right 6.380390e-04	k: 773	n:1300000
SYN1   1300000 perm   909 sec   (1430 perm/sec)   p_kst 5.946154e-04   p_cons 2.614223e-01   p_joint 6.623077e-04

Joint ci ratio: 1.331629e-01	ci left: 6.170426e-04	ci right 7.057998e-04	k: 865	n:1310000
Cons ci ratio: 5.756886e-03	ci left: 2.606599e-01	ci right 2.621656e-01	k: 342450	n:1310000
KS ci ratio: 1.404068e-01	ci left: 5.529002e-04	ci right 6.371195e-04	k: 778	n:1310000
SYN1   1310000 perm   921 sec   (1422 perm/sec)   p_kst 5.938931e-04   p_cons 2.614122e-01   p_joint 6.603053e-04

Joint ci ratio: 1.327803e-01	ci left: 6.160299e-04	ci right 7.043667e-04	k: 870	n:1320000
Cons ci ratio: 5.734061e-03	ci left: 2.607285e-01	ci right 2.622286e-01	k: 345151	n:1320000
KS ci ratio: 1.400478e-01	ci left: 5.516355e-04	ci right 6.354294e-04	k: 782	n:1320000
SYN1   1320000 perm   933 sec   (1414 perm/sec)   p_kst 5.924242e-04   p_cons 2.614780e-01   p_joint 6.590909e-04

Joint ci ratio: 1.409516e-01	ci left: 5.402331e-04	ci right 6.228691e-04	k: 772	n:1330000
Cons ci ratio: 5.712584e-03	ci left: 2.607232e-01	ci right 2.622176e-01	k: 347755	n:1330000
KS ci ratio: 1.391617e-01	ci left: 5.547441e-04	ci right 6.384329e-04	k: 792	n:1330000
SYN1   1330000 perm   945 sec   (1407 perm/sec)   p_kst 5.954887e-04   p_cons 2.614699e-01   p_joint 5.804511e-04

Joint ci ratio: 1.403176e-01	ci left: 5.412416e-04	ci right 6.236284e-04	k: 779	n:1340000
Cons ci ratio: 5.691170e-03	ci left: 2.607300e-01	ci right 2.622188e-01	k: 350375	n:1340000
KS ci ratio: 1.387251e-01	ci left: 5.542058e-04	ci right 6.375295e-04	k: 797	n:1340000
SYN1   1340000 perm   957 sec   (1400 perm/sec)   p_kst 5.947761e-04   p_cons 2.614739e-01   p_joint 5.813433e-04

Joint ci ratio: 1.421533e-01	ci left: 5.229407e-04	ci right 6.036714e-04	k: 759	n:1350000
Cons ci ratio: 5.669430e-03	ci left: 2.607751e-01	ci right 2.622585e-01	k: 353047	n:1350000
KS ci ratio: 1.383788e-01	ci left: 5.529609e-04	ci right 6.358727e-04	k: 801	n:1350000
SYN1   1350000 perm   969 sec   (1393 perm/sec)   p_kst 5.933333e-04   p_cons 2.615163e-01   p_joint 5.622222e-04

Joint ci ratio: 1.414108e-01	ci left: 5.247693e-04	ci right 6.053235e-04	k: 767	n:1360000
Cons ci ratio: 5.649399e-03	ci left: 2.607197e-01	ci right 2.621975e-01	k: 355583	n:1360000
KS ci ratio: 1.376937e-01	ci left: 5.545742e-04	ci right 6.372825e-04	k: 809	n:1360000
SYN1   1360000 perm   981 sec   (1387 perm/sec)   p_kst 5.948529e-04   p_cons 2.614581e-01   p_joint 5.639706e-04

Joint ci ratio: 1.412272e-01	ci left: 5.223471e-04	ci right 6.024166e-04	k: 769	n:1370000
Cons ci ratio: 5.628973e-03	ci left: 2.607067e-01	ci right 2.621790e-01	k: 358176	n:1370000
KS ci ratio: 1.371865e-01	ci left: 5.547552e-04	ci right 6.371608e-04	k: 815	n:1370000
SYN1   1370000 perm   993 sec   (1380 perm/sec)   p_kst 5.948905e-04   p_cons 2.614423e-01   p_joint 5.613139e-04

Joint ci ratio: 1.403188e-01	ci left: 5.255532e-04	ci right 6.055526e-04	k: 779	n:1380000
Cons ci ratio: 5.608072e-03	ci left: 2.607416e-01	ci right 2.622087e-01	k: 360835	n:1380000
KS ci ratio: 1.361885e-01	ci left: 5.591336e-04	ci right 6.415365e-04	k: 827	n:1380000
SYN1   1380000 perm   1004 sec   (1374 perm/sec)   p_kst 5.992754e-04   p_cons 2.614746e-01   p_joint 5.644928e-04

Joint ci ratio: 1.424360e-01	ci left: 5.058103e-04	ci right 5.840649e-04	k: 756	n:1390000
Cons ci ratio: 5.588006e-03	ci left: 2.607344e-01	ci right 2.621961e-01	k: 363436	n:1390000
KS ci ratio: 1.356977e-01	ci left: 5.592808e-04	ci right 6.413844e-04	k: 833	n:1390000
SYN1   1390000 perm   1017 sec   (1367 perm/sec)   p_kst 5.992806e-04   p_cons 2.614647e-01   p_joint 5.438849e-04

Joint ci ratio: 1.421547e-01	ci left: 5.042639e-04	ci right 5.821122e-04	k: 759	n:1400000
Cons ci ratio: 5.569060e-03	ci left: 2.606644e-01	ci right 2.621208e-01	k: 365949	n:1400000
KS ci ratio: 1.355355e-01	ci left: 5.566660e-04	ci right 6.382801e-04	k: 835	n:1400000
SYN1   1400000 perm   1031 sec   (1358 perm/sec)   p_kst 5.964286e-04   p_cons 2.613921e-01   p_joint 5.421429e-04

Joint ci ratio: 1.417821e-01	ci left: 5.034237e-04	ci right 5.809213e-04	k: 763	n:1410000
Cons ci ratio: 5.548603e-03	ci left: 2.607138e-01	ci right 2.621651e-01	k: 368629	n:1410000
KS ci ratio: 1.352931e-01	ci left: 5.547736e-04	ci right 6.359530e-04	k: 838	n:1410000
SYN1   1410000 perm   1043 sec   (1351 perm/sec)   p_kst 5.943262e-04   p_cons 2.614390e-01   p_joint 5.411348e-04

Joint ci ratio: 1.023280e-01	ci left: 9.795557e-04	ci right 1.085877e-03	k: 1465	n:1420000
Cons ci ratio: 5.529186e-03	ci left: 2.607056e-01	ci right 2.621517e-01	k: 371228	n:1420000
KS ci ratio: 1.347322e-01	ci left: 5.556298e-04	ci right 6.365705e-04	k: 845	n:1420000
SYN1   1420000 perm   1056 sec   (1345 perm/sec)   p_kst 5.950704e-04   p_cons 2.614282e-01   p_joint 1.031690e-03

Joint ci ratio: 1.021194e-01	ci left: 9.767942e-04	ci right 1.082586e-03	k: 1471	n:1430000
Cons ci ratio: 5.510012e-03	ci left: 2.606946e-01	ci right 2.621357e-01	k: 373823	n:1430000
KS ci ratio: 1.345734e-01	ci left: 5.530957e-04	ci right 6.335647e-04	k: 847	n:1430000
SYN1   1430000 perm   1068 sec   (1338 perm/sec)   p_kst 5.923077e-04   p_cons 2.614147e-01   p_joint 1.028671e-03

Joint ci ratio: 1.016714e-01	ci left: 9.788086e-04	ci right 1.084326e-03	k: 1484	n:1440000
Cons ci ratio: 5.491559e-03	ci left: 2.606471e-01	ci right 2.620830e-01	k: 376365	n:1440000
KS ci ratio: 1.341784e-01	ci left: 5.526103e-04	ci right 6.327538e-04	k: 852	n:1440000
SYN1   1440000 perm   1081 sec   (1332 perm/sec)   p_kst 5.916667e-04   p_cons 2.613646e-01   p_joint 1.030556e-03

Joint ci ratio: 1.010604e-01	ci left: 9.841575e-04	ci right 1.089576e-03	k: 1502	n:1450000
Cons ci ratio: 5.472264e-03	ci left: 2.606725e-01	ci right 2.621036e-01	k: 379012	n:1450000
KS ci ratio: 1.334760e-01	ci left: 5.547983e-04	ci right 6.348045e-04	k: 861	n:1450000
SYN1   1450000 perm   1094 sec   (1325 perm/sec)   p_kst 5.937931e-04   p_cons 2.613876e-01   p_joint 1.035862e-03

Joint ci ratio: 1.040855e-01	ci left: 9.200217e-04	ci right 1.021701e-03	k: 1416	n:1460000
Cons ci ratio: 5.453626e-03	ci left: 2.606655e-01	ci right 2.620916e-01	k: 381612	n:1460000
KS ci ratio: 1.327845e-01	ci left: 5.569574e-04	ci right 6.368261e-04	k: 870	n:1460000
SYN1   1460000 perm   1107 sec   (1319 perm/sec)   p_kst 5.958904e-04   p_cons 2.613781e-01   p_joint 9.698630e-04

Joint ci ratio: 1.078869e-01	ci left: 8.488613e-04	ci right 9.463196e-04	k: 1318	n:1470000
Cons ci ratio: 5.434918e-03	ci left: 2.606769e-01	ci right 2.620982e-01	k: 384239	n:1470000
KS ci ratio: 1.325565e-01	ci left: 5.551416e-04	ci right 6.346025e-04	k: 873	n:1470000
SYN1   1470000 perm   1120 sec   (1313 perm/sec)   p_kst 5.938776e-04   p_cons 2.613871e-01   p_joint 8.965986e-04

Joint ci ratio: 1.082162e-01	ci left: 8.378662e-04	ci right 9.343744e-04	k: 1310	n:1480000
Cons ci ratio: 5.416581e-03	ci left: 2.606753e-01	ci right 2.620918e-01	k: 386847	n:1480000
KS ci ratio: 1.319539e-01	ci left: 5.566173e-04	ci right 6.358987e-04	k: 881	n:1480000
SYN1   1480000 perm   1133 sec   (1306 perm/sec)   p_kst 5.952703e-04   p_cons 2.613831e-01   p_joint 8.851351e-04

Joint ci ratio: 1.082992e-01	ci left: 8.309368e-04	ci right 9.267250e-04	k: 1308	n:1490000
Cons ci ratio: 5.398786e-03	ci left: 2.606483e-01	ci right 2.620600e-01	k: 389417	n:1490000
KS ci ratio: 1.314333e-01	ci left: 5.574248e-04	ci right 6.364836e-04	k: 888	n:1490000
SYN1   1490000 perm   1147 sec   (1300 perm/sec)   p_kst 5.959732e-04   p_cons 2.613537e-01   p_joint 8.778523e-04

Joint ci ratio: 9.056867e-02	ci left: 1.190830e-03	ci right 1.304443e-03	k: 1870	n:1500000
Cons ci ratio: 5.380839e-03	ci left: 2.606450e-01	ci right 2.620519e-01	k: 392022	n:1500000
KS ci ratio: 1.310653e-01	ci left: 5.569325e-04	ci right 6.356831e-04	k: 893	n:1500000
SYN1   1500000 perm   1160 sec   (1293 perm/sec)   p_kst 5.953333e-04   p_cons 2.613480e-01   p_joint 1.246667e-03

Joint ci ratio: 9.044812e-02	ci left: 1.186180e-03	ci right 1.299191e-03	k: 1875	n:1510000
Cons ci ratio: 5.362316e-03	ci left: 2.606960e-01	ci right 2.620983e-01	k: 394709	n:1510000
KS ci ratio: 1.309191e-01	ci left: 5.545253e-04	ci right 6.328412e-04	k: 895	n:1510000
SYN1   1510000 perm   1173 sec   (1287 perm/sec)   p_kst 5.927152e-04   p_cons 2.613967e-01   p_joint 1.241722e-03

Joint ci ratio: 9.831815e-02	ci left: 9.933617e-04	ci right 1.096712e-03	k: 1587	n:1520000
Cons ci ratio: 5.344811e-03	ci left: 2.606865e-01	ci right 2.620842e-01	k: 397305	n:1520000
KS ci ratio: 1.301944e-01	ci left: 5.572412e-04	ci right 6.354714e-04	k: 905	n:1520000
SYN1   1520000 perm   1187 sec   (1281 perm/sec)   p_kst 5.953947e-04   p_cons 2.613849e-01   p_joint 1.044079e-03

Joint ci ratio: 9.797937e-02	ci left: 9.938822e-04	ci right 1.096910e-03	k: 1598	n:1530000
Cons ci ratio: 5.327260e-03	ci left: 2.606928e-01	ci right 2.620859e-01	k: 399925	n:1530000
KS ci ratio: 1.295524e-01	ci left: 5.592904e-04	ci right 6.373913e-04	k: 914	n:1530000
SYN1   1530000 perm   1201 sec   (1274 perm/sec)   p_kst 5.973856e-04   p_cons 2.613889e-01   p_joint 1.044444e-03

Joint ci ratio: 9.755312e-02	ci left: 9.962972e-04	ci right 1.099101e-03	k: 1612	n:1540000
Cons ci ratio: 5.309399e-03	ci left: 2.607340e-01	ci right 2.621227e-01	k: 402599	n:1540000
KS ci ratio: 1.291999e-01	ci left: 5.588003e-04	ci right 6.366042e-04	k: 919	n:1540000
SYN1   1540000 perm   1214 sec   (1268 perm/sec)   p_kst 5.967532e-04   p_cons 2.614279e-01   p_joint 1.046753e-03

Joint ci ratio: 9.734224e-02	ci left: 9.942755e-04	ci right 1.096636e-03	k: 1619	n:1550000
Cons ci ratio: 5.291513e-03	ci left: 2.607896e-01	ci right 2.621739e-01	k: 405296	n:1550000
KS ci ratio: 1.290599e-01	ci left: 5.564437e-04	ci right 6.338291e-04	k: 921	n:1550000
SYN1   1550000 perm   1228 sec   (1262 perm/sec)   p_kst 5.941935e-04   p_cons 2.614813e-01   p_joint 1.044516e-03

Joint ci ratio: 9.755378e-02	ci left: 9.835238e-04	ci right 1.085010e-03	k: 1612	n:1560000
Cons ci ratio: 5.273973e-03	ci left: 2.608323e-01	ci right 2.622122e-01	k: 407974	n:1560000
KS ci ratio: 1.288505e-01	ci left: 5.547378e-04	ci right 6.317513e-04	k: 924	n:1560000
SYN1   1560000 perm   1242 sec   (1256 perm/sec)   p_kst 5.923077e-04   p_cons 2.615218e-01   p_joint 1.033333e-03

Joint ci ratio: 9.788880e-02	ci left: 9.704239e-04	ci right 1.070922e-03	k: 1601	n:1570000
Cons ci ratio: 5.257646e-03	ci left: 2.607981e-01	ci right 2.621735e-01	k: 410532	n:1570000
KS ci ratio: 1.285037e-01	ci left: 5.542866e-04	ci right 6.310145e-04	k: 929	n:1570000
SYN1   1570000 perm   1256 sec   (1250 perm/sec)   p_kst 5.917197e-04   p_cons 2.614854e-01   p_joint 1.019745e-03

Joint ci ratio: 9.932697e-02	ci left: 9.358851e-04	ci right 1.034313e-03	k: 1555	n:1580000
Cons ci ratio: 5.241187e-03	ci left: 2.607852e-01	ci right 2.621562e-01	k: 413123	n:1580000
KS ci ratio: 1.280912e-01	ci left: 5.544541e-04	ci right 6.309401e-04	k: 935	n:1580000
SYN1   1580000 perm   1270 sec   (1244 perm/sec)   p_kst 5.917722e-04   p_cons 2.614703e-01   p_joint 9.841772e-04

Joint ci ratio: 9.897769e-02	ci left: 9.367458e-04	ci right 1.034898e-03	k: 1566	n:1590000
Cons ci ratio: 5.224779e-03	ci left: 2.607800e-01	ci right 2.621467e-01	k: 415726	n:1590000
KS ci ratio: 1.276826e-01	ci left: 5.546198e-04	ci right 6.308661e-04	k: 941	n:1590000
SYN1   1590000 perm   1284 sec   (1238 perm/sec)   p_kst 5.918239e-04   p_cons 2.614629e-01   p_joint 9.849057e-04

Joint ci ratio: 9.841382e-02	ci left: 9.418635e-04	ci right 1.039957e-03	k: 1584	n:1600000
Cons ci ratio: 5.208144e-03	ci left: 2.608030e-01	ci right 2.621654e-01	k: 418374	n:1600000
KS ci ratio: 1.269434e-01	ci left: 5.578095e-04	ci right 6.340170e-04	k: 952	n:1600000
SYN1   1600000 perm   1298 sec   (1232 perm/sec)   p_kst 5.950000e-04   p_cons 2.614838e-01   p_joint 9.900000e-04

Joint ci ratio: 9.801260e-02	ci left: 9.438897e-04	ci right 1.041771e-03	k: 1597	n:1610000
Cons ci ratio: 5.192060e-03	ci left: 2.607965e-01	ci right 2.621547e-01	k: 420975	n:1610000
KS ci ratio: 1.263481e-01	ci left: 5.597579e-04	ci right 6.358460e-04	k: 961	n:1610000
SYN1   1610000 perm   1312 sec   (1227 perm/sec)   p_kst 5.968944e-04   p_cons 2.614752e-01   p_joint 9.919255e-04

Joint ci ratio: 9.764659e-02	ci left: 9.452894e-04	ci right 1.042928e-03	k: 1609	n:1620000
Cons ci ratio: 5.176191e-03	ci left: 2.607852e-01	ci right 2.621391e-01	k: 423568	n:1620000
KS ci ratio: 1.258908e-01	ci left: 5.604873e-04	ci right 6.363783e-04	k: 968	n:1620000
SYN1   1620000 perm   1327 sec   (1221 perm/sec)   p_kst 5.975309e-04   p_cons 2.614617e-01   p_joint 9.932099e-04

Joint ci ratio: 9.734474e-02	ci left: 9.454755e-04	ci right 1.042815e-03	k: 1619	n:1630000
Cons ci ratio: 5.160064e-03	ci left: 2.608040e-01	ci right 2.621539e-01	k: 426210	n:1630000
KS ci ratio: 1.255029e-01	ci left: 5.606139e-04	ci right 6.362708e-04	k: 974	n:1630000
SYN1   1630000 perm   1341 sec   (1215 perm/sec)   p_kst 5.975460e-04   p_cons 2.614785e-01   p_joint 9.932515e-04

Joint ci ratio: 9.844610e-02	ci left: 9.182960e-04	ci right 1.013968e-03	k: 1583	n:1640000
Cons ci ratio: 5.145159e-03	ci left: 2.607423e-01	ci right 2.620879e-01	k: 428720	n:1640000
KS ci ratio: 1.252463e-01	ci left: 5.595581e-04	ci right 6.349066e-04	k: 978	n:1640000
SYN1   1640000 perm   1356 sec   (1209 perm/sec)   p_kst 5.963415e-04   p_cons 2.614146e-01   p_joint 9.652439e-04

Joint ci ratio: 9.816763e-02	ci left: 9.180510e-04	ci right 1.013412e-03	k: 1592	n:1650000
Cons ci ratio: 5.128982e-03	ci left: 2.607866e-01	ci right 2.621282e-01	k: 431404	n:1650000
KS ci ratio: 1.249277e-01	ci left: 5.591023e-04	ci right 6.341837e-04	k: 983	n:1650000
SYN1   1650000 perm   1371 sec   (1204 perm/sec)   p_kst 5.957576e-04   p_cons 2.614570e-01   p_joint 9.648485e-04

Joint ci ratio: 9.773895e-02	ci left: 9.207477e-04	ci right 1.015947e-03	k: 1606	n:1660000
Cons ci ratio: 5.113546e-03	ci left: 2.607859e-01	ci right 2.621234e-01	k: 434014	n:1660000
KS ci ratio: 1.245486e-01	ci left: 5.592359e-04	ci right 6.340905e-04	k: 989	n:1660000
SYN1   1660000 perm   1385 sec   (1199 perm/sec)   p_kst 5.957831e-04   p_cons 2.614542e-01   p_joint 9.674699e-04

Joint ci ratio: 9.743625e-02	ci left: 9.210762e-04	ci right 1.015997e-03	k: 1616	n:1670000
Cons ci ratio: 5.097870e-03	ci left: 2.608139e-01	ci right 2.621474e-01	k: 436672	n:1670000
KS ci ratio: 1.239862e-01	ci left: 5.611089e-04	ci right 6.358502e-04	k: 998	n:1670000
SYN1   1670000 perm   1399 sec   (1193 perm/sec)   p_kst 5.976048e-04   p_cons 2.614802e-01   p_joint 9.676647e-04

Joint ci ratio: 9.171038e-02	ci left: 1.036480e-03	ci right 1.136681e-03	k: 1824	n:1680000
Cons ci ratio: 5.082619e-03	ci left: 2.608201e-01	ci right 2.621497e-01	k: 439294	n:1680000
KS ci ratio: 1.234926e-01	ci left: 5.623835e-04	ci right 6.369746e-04	k: 1006	n:1680000
SYN1   1680000 perm   1414 sec   (1188 perm/sec)   p_kst 5.988095e-04   p_cons 2.614845e-01   p_joint 1.085714e-03

Joint ci ratio: 9.128603e-02	ci left: 1.040176e-03	ci right 1.140244e-03	k: 1841	n:1690000
Cons ci ratio: 5.067069e-03	ci left: 2.608594e-01	ci right 2.621852e-01	k: 441972	n:1690000
KS ci ratio: 1.230049e-01	ci left: 5.636436e-04	ci right 6.380851e-04	k: 1014	n:1690000
SYN1   1690000 perm   1430 sec   (1182 perm/sec)   p_kst 6.000000e-04   p_cons 2.615219e-01   p_joint 1.089349e-03

Joint ci ratio: 9.103927e-02	ci left: 1.039806e-03	ci right 1.139553e-03	k: 1851	n:1700000
Cons ci ratio: 5.051522e-03	ci left: 2.609089e-01	ci right 2.622308e-01	k: 444668	n:1700000
KS ci ratio: 1.224631e-01	ci left: 5.654597e-04	ci right 6.397882e-04	k: 1023	n:1700000
SYN1   1700000 perm   1445 sec   (1177 perm/sec)   p_kst 6.017647e-04   p_cons 2.615694e-01   p_joint 1.088824e-03

Joint ci ratio: 9.379216e-02	ci left: 9.725963e-04	ci right 1.068873e-03	k: 1744	n:1710000
Cons ci ratio: 5.036644e-03	ci left: 2.609174e-01	ci right 2.622354e-01	k: 447295	n:1710000
KS ci ratio: 1.222246e-01	ci left: 5.644205e-04	ci right 6.384575e-04	k: 1027	n:1710000
SYN1   1710000 perm   1460 sec   (1172 perm/sec)   p_kst 6.005848e-04   p_cons 2.615760e-01   p_joint 1.019883e-03

Joint ci ratio: 9.341806e-02	ci left: 9.748907e-04	ci right 1.070988e-03	k: 1758	n:1720000
Cons ci ratio: 5.021987e-03	ci left: 2.609189e-01	ci right 2.622331e-01	k: 449910	n:1720000
KS ci ratio: 1.215757e-01	ci left: 5.673393e-04	ci right 6.413357e-04	k: 1038	n:1720000
SYN1   1720000 perm   1474 sec   (1167 perm/sec)   p_kst 6.034884e-04   p_cons 2.615756e-01   p_joint 1.022093e-03

Joint ci ratio: 9.310098e-02	ci left: 9.760301e-04	ci right 1.071896e-03	k: 1770	n:1730000
Cons ci ratio: 5.007240e-03	ci left: 2.609371e-01	ci right 2.622475e-01	k: 452554	n:1730000
KS ci ratio: 1.211103e-01	ci left: 5.685439e-04	ci right 6.423931e-04	k: 1046	n:1730000
SYN1   1730000 perm   1489 sec   (1162 perm/sec)   p_kst 6.046243e-04   p_cons 2.615919e-01   p_joint 1.023121e-03

Joint ci ratio: 9.296997e-02	ci left: 9.732274e-04	ci right 1.068676e-03	k: 1775	n:1740000
Cons ci ratio: 4.992793e-03	ci left: 2.609419e-01	ci right 2.622485e-01	k: 455175	n:1740000
KS ci ratio: 1.207074e-01	ci left: 5.691777e-04	ci right 6.428458e-04	k: 1053	n:1740000
SYN1   1740000 perm   1504 sec   (1157 perm/sec)   p_kst 6.051724e-04   p_cons 2.615948e-01   p_joint 1.020115e-03

Joint ci ratio: 9.278738e-02	ci left: 9.715732e-04	ci right 1.066662e-03	k: 1782	n:1750000
Cons ci ratio: 4.978743e-03	ci left: 2.609255e-01	ci right 2.622284e-01	k: 457759	n:1750000
KS ci ratio: 1.204791e-01	ci left: 5.681420e-04	ci right 6.415270e-04	k: 1057	n:1750000
SYN1   1750000 perm   1519 sec   (1152 perm/sec)   p_kst 6.040000e-04   p_cons 2.615766e-01   p_joint 1.018286e-03

Joint ci ratio: 9.414520e-02	ci left: 9.377521e-04	ci right 1.030948e-03	k: 1731	n:1760000
Cons ci ratio: 4.964029e-03	ci left: 2.609701e-01	ci right 2.622693e-01	k: 460450	n:1760000
KS ci ratio: 1.200261e-01	ci left: 5.693227e-04	ci right 6.425641e-04	k: 1065	n:1760000
SYN1   1760000 perm   1535 sec   (1147 perm/sec)   p_kst 6.051136e-04   p_cons 2.616193e-01   p_joint 9.835227e-04

Joint ci ratio: 9.414547e-02	ci left: 9.324540e-04	ci right 1.025123e-03	k: 1731	n:1770000
Cons ci ratio: 4.950111e-03	ci left: 2.609622e-01	ci right 2.622578e-01	k: 463049	n:1770000
KS ci ratio: 1.198577e-01	ci left: 5.677502e-04	ci right 6.406796e-04	k: 1068	n:1770000
SYN1   1770000 perm   1550 sec   (1142 perm/sec)   p_kst 6.033898e-04   p_cons 2.616096e-01   p_joint 9.779661e-04

Joint ci ratio: 9.384789e-02	ci left: 9.332500e-04	ci right 1.025689e-03	k: 1742	n:1780000
Cons ci ratio: 4.936202e-03	ci left: 2.609629e-01	ci right 2.622548e-01	k: 465663	n:1780000
KS ci ratio: 1.194116e-01	ci left: 5.689205e-04	ci right 6.417090e-04	k: 1076	n:1780000
SYN1   1780000 perm   1565 sec   (1137 perm/sec)   p_kst 6.044944e-04   p_cons 2.616084e-01   p_joint 9.786517e-04

Joint ci ratio: 9.357982e-02	ci left: 9.334920e-04	ci right 1.025677e-03	k: 1752	n:1790000
Cons ci ratio: 4.922331e-03	ci left: 2.609697e-01	ci right 2.622579e-01	k: 468288	n:1790000
KS ci ratio: 1.188063e-01	ci left: 5.717044e-04	ci right 6.444522e-04	k: 1087	n:1790000
SYN1   1790000 perm   1581 sec   (1132 perm/sec)   p_kst 6.072626e-04   p_cons 2.616134e-01   p_joint 9.787709e-04

Joint ci ratio: 9.315550e-02	ci left: 9.369873e-04	ci right 1.029075e-03	k: 1768	n:1800000
Cons ci ratio: 4.908703e-03	ci left: 2.609664e-01	ci right 2.622511e-01	k: 470895	n:1800000
KS ci ratio: 1.182639e-01	ci left: 5.739191e-04	ci right 6.465921e-04	k: 1097	n:1800000
SYN1   1800000 perm   1597 sec   (1127 perm/sec)   p_kst 6.094444e-04   p_cons 2.616083e-01   p_joint 9.822222e-04

Joint ci ratio: 9.297181e-02	ci left: 9.355879e-04	ci right 1.027347e-03	k: 1775	n:1810000
Cons ci ratio: 4.895608e-03	ci left: 2.609300e-01	ci right 2.622111e-01	k: 473442	n:1810000
KS ci ratio: 1.179956e-01	ci left: 5.734291e-04	ci right 6.458638e-04	k: 1102	n:1810000
SYN1   1810000 perm   1612 sec   (1123 perm/sec)   p_kst 6.088398e-04   p_cons 2.615702e-01   p_joint 9.806630e-04

Joint ci ratio: 9.278920e-02	ci left: 9.342041e-04	ci right 1.025637e-03	k: 1782	n:1820000
Cons ci ratio: 4.881944e-03	ci left: 2.609473e-01	ci right 2.622249e-01	k: 476086	n:1820000
KS ci ratio: 1.177291e-01	ci left: 5.729446e-04	ci right 6.451433e-04	k: 1107	n:1820000
SYN1   1820000 perm   1628 sec   (1118 perm/sec)   p_kst 6.082418e-04   p_cons 2.615857e-01   p_joint 9.791209e-04

Joint ci ratio: 9.247847e-02	ci left: 9.355047e-04	ci right 1.026742e-03	k: 1794	n:1830000
Cons ci ratio: 4.868586e-03	ci left: 2.609491e-01	ci right 2.622232e-01	k: 478702	n:1830000
KS ci ratio: 1.175172e-01	ci left: 5.719353e-04	ci right 6.438680e-04	k: 1111	n:1830000
SYN1   1830000 perm   1644 sec   (1113 perm/sec)   p_kst 6.071038e-04   p_cons 2.615858e-01   p_joint 9.803279e-04

Joint ci ratio: 9.224752e-02	ci left: 9.351987e-04	ci right 1.026166e-03	k: 1803	n:1840000
Cons ci ratio: 4.855760e-03	ci left: 2.609173e-01	ci right 2.621878e-01	k: 481256	n:1840000
KS ci ratio: 1.173591e-01	ci left: 5.704094e-04	ci right 6.420471e-04	k: 1114	n:1840000
SYN1   1840000 perm   1660 sec   (1109 perm/sec)   p_kst 6.054348e-04   p_cons 2.615522e-01   p_joint 9.798913e-04

Joint ci ratio: 9.196752e-02	ci left: 9.359526e-04	ci right 1.026702e-03	k: 1814	n:1850000
Cons ci ratio: 4.842568e-03	ci left: 2.609230e-01	ci right 2.621902e-01	k: 483879	n:1850000
KS ci ratio: 1.169924e-01	ci left: 5.709990e-04	ci right 6.424712e-04	k: 1121	n:1850000
SYN1   1850000 perm   1675 sec   (1104 perm/sec)   p_kst 6.059459e-04   p_cons 2.615562e-01   p_joint 9.805405e-04

Joint ci ratio: 9.250500e-02	ci left: 9.198904e-04	ci right 1.009632e-03	k: 1793	n:1860000
Cons ci ratio: 4.829698e-03	ci left: 2.609115e-01	ci right 2.621752e-01	k: 486470	n:1860000
KS ci ratio: 1.166809e-01	ci left: 5.710607e-04	ci right 6.423371e-04	k: 1127	n:1860000
SYN1   1860000 perm   1692 sec   (1100 perm/sec)   p_kst 6.059140e-04   p_cons 2.615430e-01   p_joint 9.639785e-04

Joint ci ratio: 9.214604e-02	ci left: 9.222850e-04	ci right 1.011892e-03	k: 1807	n:1870000
Cons ci ratio: 4.816597e-03	ci left: 2.609269e-01	ci right 2.621872e-01	k: 489111	n:1870000
KS ci ratio: 1.162692e-01	ci left: 5.721603e-04	ci right 6.433048e-04	k: 1135	n:1870000
SYN1   1870000 perm   1708 sec   (1095 perm/sec)   p_kst 6.069519e-04   p_cons 2.615567e-01   p_joint 9.663102e-04

Joint ci ratio: 9.191757e-02	ci left: 9.220563e-04	ci right 1.011407e-03	k: 1816	n:1880000
Cons ci ratio: 4.803476e-03	ci left: 2.609522e-01	ci right 2.622092e-01	k: 491771	n:1880000
KS ci ratio: 1.159634e-01	ci left: 5.722157e-04	ci right 6.431671e-04	k: 1141	n:1880000
SYN1   1880000 perm   1724 sec   (1090 perm/sec)   p_kst 6.069149e-04   p_cons 2.615803e-01   p_joint 9.659574e-04

Joint ci ratio: 9.174108e-02	ci left: 9.207963e-04	ci right 1.009845e-03	k: 1823	n:1890000
Cons ci ratio: 4.790383e-03	ci left: 2.609836e-01	ci right 2.622373e-01	k: 494443	n:1890000
KS ci ratio: 1.157104e-01	ci left: 5.717570e-04	ci right 6.424862e-04	k: 1146	n:1890000
SYN1   1890000 perm   1740 sec   (1086 perm/sec)   p_kst 6.063492e-04   p_cons 2.616101e-01   p_joint 9.645503e-04

Joint ci ratio: 9.146567e-02	ci left: 9.216069e-04	ci right 1.010452e-03	k: 1834	n:1900000
Cons ci ratio: 4.777845e-03	ci left: 2.609783e-01	ci right 2.622287e-01	k: 497046	n:1900000
KS ci ratio: 1.155092e-01	ci left: 5.707921e-04	ci right 6.412708e-04	k: 1150	n:1900000
SYN1   1900000 perm   1757 sec   (1082 perm/sec)   p_kst 6.052632e-04   p_cons 2.616032e-01   p_joint 9.652632e-04

Joint ci ratio: 9.134142e-02	ci left: 9.193396e-04	ci right 1.007839e-03	k: 1839	n:1910000
Cons ci ratio: 4.765134e-03	ci left: 2.609951e-01	ci right 2.622423e-01	k: 499691	n:1910000
KS ci ratio: 1.151596e-01	ci left: 5.713629e-04	ci right 6.416840e-04	k: 1157	n:1910000
SYN1   1910000 perm   1773 sec   (1077 perm/sec)   p_kst 6.057592e-04   p_cons 2.616183e-01   p_joint 9.628272e-04

Joint ci ratio: 9.119294e-02	ci left: 9.176050e-04	ci right 1.005786e-03	k: 1845	n:1920000
Cons ci ratio: 4.752620e-03	ci left: 2.610039e-01	ci right 2.622478e-01	k: 502321	n:1920000
KS ci ratio: 1.148130e-01	ci left: 5.719280e-04	ci right 6.420925e-04	k: 1164	n:1920000
SYN1   1920000 perm   1790 sec   (1073 perm/sec)   p_kst 6.062500e-04   p_cons 2.616255e-01   p_joint 9.609375e-04

Joint ci ratio: 9.089792e-02	ci left: 9.189267e-04	ci right 1.006934e-03	k: 1857	n:1930000
Cons ci ratio: 4.740236e-03	ci left: 2.610101e-01	ci right 2.622508e-01	k: 504946	n:1930000
KS ci ratio: 1.143720e-01	ci left: 5.734942e-04	ci right 6.435624e-04	k: 1173	n:1930000
SYN1   1930000 perm   1806 sec   (1068 perm/sec)   p_kst 6.077720e-04   p_cons 2.616301e-01   p_joint 9.621762e-04

Joint ci ratio: 9.065428e-02	ci left: 9.192276e-04	ci right 1.007015e-03	k: 1867	n:1940000
Cons ci ratio: 4.728024e-03	ci left: 2.610100e-01	ci right 2.622474e-01	k: 507559	n:1940000
KS ci ratio: 1.140809e-01	ci left: 5.735425e-04	ci right 6.434262e-04	k: 1179	n:1940000
SYN1   1940000 perm   1823 sec   (1064 perm/sec)   p_kst 6.077320e-04   p_cons 2.616284e-01   p_joint 9.623711e-04

Joint ci ratio: 9.031637e-02	ci left: 9.215306e-04	ci right 1.009193e-03	k: 1881	n:1950000
Cons ci ratio: 4.715768e-03	ci left: 2.610211e-01	ci right 2.622555e-01	k: 510194	n:1950000
KS ci ratio: 1.137440e-01	ci left: 5.740887e-04	ci right 6.438185e-04	k: 1186	n:1950000
SYN1   1950000 perm   1840 sec   (1060 perm/sec)   p_kst 6.082051e-04   p_cons 2.616379e-01   p_joint 9.646154e-04

Joint ci ratio: 9.048519e-02	ci left: 9.133381e-04	ci right 1.000392e-03	k: 1874	n:1960000
Cons ci ratio: 4.703992e-03	ci left: 2.610006e-01	ci right 2.622317e-01	k: 512767	n:1960000
KS ci ratio: 1.136484e-01	ci left: 5.721510e-04	ci right 6.415832e-04	k: 1188	n:1960000
SYN1   1960000 perm   1857 sec   (1055 perm/sec)   p_kst 6.061224e-04   p_cons 2.616158e-01   p_joint 9.561224e-04

Joint ci ratio: 9.029280e-02	ci left: 9.126710e-04	ci right 9.994667e-04	k: 1882	n:1970000
Cons ci ratio: 4.692089e-03	ci left: 2.609980e-01	ci right 2.622260e-01	k: 515375	n:1970000
KS ci ratio: 1.133153e-01	ci left: 5.726992e-04	ci right 6.419805e-04	k: 1195	n:1970000
SYN1   1970000 perm   1874 sec   (1051 perm/sec)   p_kst 6.065990e-04   p_cons 2.616117e-01   p_joint 9.553299e-04

Joint ci ratio: 9.520141e-02	ci left: 8.148174e-04	ci right 8.967548e-04	k: 1693	n:1980000
Cons ci ratio: 4.679895e-03	ci left: 2.610268e-01	ci right 2.622517e-01	k: 518045	n:1980000
KS ci ratio: 1.130321e-01	ci left: 5.727513e-04	ci right 6.418542e-04	k: 1201	n:1980000
SYN1   1980000 perm   1891 sec   (1047 perm/sec)   p_kst 6.065657e-04   p_cons 2.616389e-01   p_joint 8.550505e-04

Joint ci ratio: 9.602782e-02	ci left: 7.964981e-04	ci right 8.773277e-04	k: 1664	n:1990000
Cons ci ratio: 4.667833e-03	ci left: 2.610522e-01	ci right 2.622741e-01	k: 520709	n:1990000
KS ci ratio: 1.127978e-01	ci left: 5.723147e-04	ci right 6.412123e-04	k: 1206	n:1990000
SYN1   1990000 perm   1908 sec   (1043 perm/sec)   p_kst 6.060302e-04   p_cons 2.616628e-01   p_joint 8.361809e-04

Joint ci ratio: 9.588404e-02	ci left: 7.949556e-04	ci right 8.755011e-04	k: 1669	n:2000000
Cons ci ratio: 4.656351e-03	ci left: 2.610369e-01	ci right 2.622557e-01	k: 523292	n:2000000
KS ci ratio: 1.126114e-01	ci left: 5.713968e-04	ci right 6.400627e-04	k: 1210	n:2000000
SYN1   2000000 perm   1925 sec   (1039 perm/sec)   p_kst 6.050000e-04   p_cons 2.616460e-01   p_joint 8.345000e-04

Joint ci ratio: 9.545615e-02	ci left: 7.982848e-04	ci right 8.787865e-04	k: 1684	n:2010000
Cons ci ratio: 4.644374e-03	ci left: 2.610701e-01	ci right 2.622859e-01	k: 525972	n:2010000
KS ci ratio: 1.122412e-01	ci left: 5.724222e-04	ci right 6.409702e-04	k: 1218	n:2010000
SYN1   2010000 perm   1943 sec   (1035 perm/sec)   p_kst 6.059701e-04   p_cons 2.616776e-01   p_joint 8.378109e-04

Joint ci ratio: 9.511796e-02	ci left: 8.001320e-04	ci right 8.805181e-04	k: 1696	n:2020000
Cons ci ratio: 4.632554e-03	ci left: 2.610974e-01	ci right 2.623102e-01	k: 528641	n:2020000
KS ci ratio: 1.118747e-01	ci left: 5.734378e-04	ci right 6.418684e-04	k: 1226	n:2020000
SYN1   2020000 perm   1960 sec   (1031 perm/sec)   p_kst 6.069307e-04   p_cons 2.617035e-01   p_joint 8.396040e-04

Joint ci ratio: 9.475561e-02	ci left: 8.024424e-04	ci right 8.827365e-04	k: 1709	n:2030000
Cons ci ratio: 4.620700e-03	ci left: 2.611348e-01	ci right 2.623447e-01	k: 531331	n:2030000
KS ci ratio: 1.115117e-01	ci left: 5.744438e-04	ci right 6.427574e-04	k: 1234	n:2030000
SYN1   2030000 perm   1977 sec   (1027 perm/sec)   p_kst 6.078818e-04   p_cons 2.617394e-01   p_joint 8.418719e-04

Joint ci ratio: 9.472808e-02	ci left: 7.989873e-04	ci right 8.789112e-04	k: 1710	n:2040000
Cons ci ratio: 4.609416e-03	ci left: 2.611317e-01	ci right 2.623386e-01	k: 533939	n:2040000
KS ci ratio: 1.114216e-01	ci left: 5.725809e-04	ci right 6.406144e-04	k: 1236	n:2040000
SYN1   2040000 perm   1994 sec   (1023 perm/sec)   p_kst 6.058824e-04   p_cons 2.617348e-01   p_joint 8.382353e-04

Joint ci ratio: 9.492281e-02	ci left: 7.917560e-04	ci right 8.711284e-04	k: 1703	n:2050000
Cons ci ratio: 4.597941e-03	ci left: 2.611515e-01	ci right 2.623555e-01	k: 536594	n:2050000
KS ci ratio: 1.110630e-01	ci left: 5.735817e-04	ci right 6.415004e-04	k: 1244	n:2050000
SYN1   2050000 perm   2012 sec   (1019 perm/sec)   p_kst 6.068293e-04   p_cons 2.617532e-01   p_joint 8.307317e-04

Joint ci ratio: 9.470078e-02	ci left: 7.917040e-04	ci right 8.708752e-04	k: 1711	n:2060000
Cons ci ratio: 4.586799e-03	ci left: 2.611503e-01	ci right 2.623514e-01	k: 539206	n:2060000
KS ci ratio: 1.108407e-01	ci left: 5.731572e-04	ci right 6.408809e-04	k: 1249	n:2060000
SYN1   2060000 perm   2030 sec   (1015 perm/sec)   p_kst 6.063107e-04   p_cons 2.617505e-01   p_joint 8.305825e-04

Joint ci ratio: 9.448029e-02	ci left: 7.916526e-04	ci right 8.706242e-04	k: 1719	n:2070000
Cons ci ratio: 4.575606e-03	ci left: 2.611602e-01	ci right 2.623584e-01	k: 541841	n:2070000
KS ci ratio: 1.106638e-01	ci left: 5.722671e-04	ci right 6.397707e-04	k: 1253	n:2070000
SYN1   2070000 perm   2047 sec   (1011 perm/sec)   p_kst 6.053140e-04   p_cons 2.617589e-01   p_joint 8.304348e-04

Joint ci ratio: 9.495127e-02	ci left: 7.798669e-04	ci right 8.580721e-04	k: 1702	n:2080000
Cons ci ratio: 4.564853e-03	ci left: 2.611397e-01	ci right 2.623350e-01	k: 544413	n:2080000
KS ci ratio: 1.104878e-01	ci left: 5.713857e-04	ci right 6.386712e-04	k: 1257	n:2080000
SYN1   2080000 perm   2065 sec   (1007 perm/sec)   p_kst 6.043269e-04   p_cons 2.617370e-01   p_joint 8.182692e-04

Joint ci ratio: 9.472904e-02	ci left: 7.798724e-04	ci right 8.578850e-04	k: 1710	n:2090000
Cons ci ratio: 4.553882e-03	ci left: 2.611443e-01	ci right 2.623367e-01	k: 547037	n:2090000
KS ci ratio: 1.102689e-01	ci left: 5.709781e-04	ci right 6.380737e-04	k: 1262	n:2090000
SYN1   2090000 perm   2083 sec   (1003 perm/sec)   p_kst 6.038278e-04   p_cons 2.617402e-01   p_joint 8.181818e-04

Joint ci ratio: 9.540122e-02	ci left: 7.650016e-04	ci right 8.421000e-04	k: 1686	n:2100000
Cons ci ratio: 4.543437e-03	ci left: 2.611108e-01	ci right 2.623003e-01	k: 549581	n:2100000
KS ci ratio: 1.100947e-01	ci left: 5.701114e-04	ci right 6.369925e-04	k: 1266	n:2100000
SYN1   2100000 perm   2101 sec   (999 perm/sec)   p_kst 6.028571e-04   p_cons 2.617052e-01   p_joint 8.028571e-04

Joint ci ratio: 9.517582e-02	ci left: 7.650771e-04	ci right 8.419908e-04	k: 1694	n:2110000
Cons ci ratio: 4.532592e-03	ci left: 2.611179e-01	ci right 2.623046e-01	k: 552210	n:2110000
KS ci ratio: 1.096198e-01	ci left: 5.724795e-04	ci right 6.393300e-04	k: 1277	n:2110000
SYN1   2110000 perm   2120 sec   (995 perm/sec)   p_kst 6.052133e-04   p_cons 2.617109e-01   p_joint 8.028436e-04

Joint ci ratio: 9.500785e-02	ci left: 7.642311e-04	ci right 8.409166e-04	k: 1700	n:2120000
Cons ci ratio: 4.521939e-03	ci left: 2.611150e-01	ci right 2.622989e-01	k: 554818	n:2120000
KS ci ratio: 1.094914e-01	ci left: 5.711555e-04	ci right 6.377682e-04	k: 1280	n:2120000
SYN1   2120000 perm   2138 sec   (991 perm/sec)   p_kst 6.037736e-04   p_cons 2.617066e-01   p_joint 8.018868e-04

Joint ci ratio: 9.459154e-02	ci left: 7.675186e-04	ci right 8.441778e-04	k: 1715	n:2130000
Cons ci ratio: 4.510879e-03	ci left: 2.611534e-01	ci right 2.623346e-01	k: 557514	n:2130000
KS ci ratio: 1.091087e-01	ci left: 5.725838e-04	ci right 6.391147e-04	k: 1289	n:2130000
SYN1   2130000 perm   2157 sec   (988 perm/sec)   p_kst 6.051643e-04   p_cons 2.617437e-01   p_joint 8.051643e-04

Joint ci ratio: 9.557218e-02	ci left: 7.479654e-04	ci right 8.234895e-04	k: 1680	n:2140000
Cons ci ratio: 4.500216e-03	ci left: 2.611644e-01	ci right 2.623428e-01	k: 560152	n:2140000
KS ci ratio: 1.089822e-01	ci left: 5.712718e-04	ci right 6.375683e-04	k: 1292	n:2140000
SYN1   2140000 perm   2175 sec   (984 perm/sec)   p_kst 6.037383e-04   p_cons 2.617533e-01   p_joint 7.850467e-04

Joint ci ratio: 9.540211e-02	ci left: 7.472106e-04	ci right 8.225167e-04	k: 1686	n:2150000
Cons ci ratio: 4.489600e-03	ci left: 2.611776e-01	ci right 2.623533e-01	k: 562795	n:2150000
KS ci ratio: 1.087721e-01	ci left: 5.708770e-04	ci right 6.369918e-04	k: 1297	n:2150000
SYN1   2150000 perm   2194 sec   (980 perm/sec)   p_kst 6.032558e-04   p_cons 2.617651e-01   p_joint 7.841860e-04

Joint ci ratio: 9.514862e-02	ci left: 7.478186e-04	ci right 8.229746e-04	k: 1695	n:2160000
Cons ci ratio: 4.479247e-03	ci left: 2.611745e-01	ci right 2.623474e-01	k: 565403	n:2160000
KS ci ratio: 1.086885e-01	ci left: 5.691348e-04	ci right 6.349939e-04	k: 1299	n:2160000
SYN1   2160000 perm   2213 sec   (976 perm/sec)   p_kst 6.013889e-04   p_cons 2.617606e-01   p_joint 7.847222e-04

Joint ci ratio: 9.498080e-02	ci left: 7.470717e-04	ci right 8.220128e-04	k: 1701	n:2170000
Cons ci ratio: 4.469003e-03	ci left: 2.611682e-01	ci right 2.623384e-01	k: 568004	n:2170000
KS ci ratio: 1.084385e-01	ci left: 5.692019e-04	ci right 6.349077e-04	k: 1305	n:2170000
SYN1   2170000 perm   2232 sec   (972 perm/sec)   p_kst 6.013825e-04   p_cons 2.617530e-01   p_joint 7.838710e-04

Joint ci ratio: 9.473064e-02	ci left: 7.476753e-04	ci right 8.224685e-04	k: 1710	n:2180000
Cons ci ratio: 4.458432e-03	ci left: 2.611964e-01	ci right 2.623639e-01	k: 570680	n:2180000
KS ci ratio: 1.082316e-01	ci left: 5.688223e-04	ci right 6.343510e-04	k: 1310	n:2180000
SYN1   2180000 perm   2250 sec   (969 perm/sec)   p_kst 6.009174e-04   p_cons 2.617798e-01   p_joint 7.844037e-04

Joint ci ratio: 9.450995e-02	ci left: 7.478278e-04	ci right 8.224523e-04	k: 1718	n:2190000
Cons ci ratio: 4.448466e-03	ci left: 2.611782e-01	ci right 2.623430e-01	k: 573255	n:2190000
KS ci ratio: 1.079438e-01	ci left: 5.693349e-04	ci right 6.347371e-04	k: 1317	n:2190000
SYN1   2190000 perm   2269 sec   (965 perm/sec)   p_kst 6.013699e-04   p_cons 2.617603e-01   p_joint 7.844749e-04

Joint ci ratio: 9.434548e-02	ci left: 7.470914e-04	ci right 8.215055e-04	k: 1724	n:2200000
Cons ci ratio: 4.438186e-03	ci left: 2.611933e-01	ci right 2.623555e-01	k: 575903	n:2200000
KS ci ratio: 1.076582e-01	ci left: 5.698431e-04	ci right 6.351195e-04	k: 1324	n:2200000
SYN1   2200000 perm   2287 sec   (962 perm/sec)   p_kst 6.018182e-04   p_cons 2.617741e-01   p_joint 7.836364e-04

Joint ci ratio: 9.404603e-02	ci left: 7.485711e-04	ci right 8.228829e-04	k: 1735	n:2210000
Cons ci ratio: 4.427914e-03	ci left: 2.612137e-01	ci right 2.623733e-01	k: 578563	n:2210000
KS ci ratio: 1.074557e-01	ci left: 5.694662e-04	ci right 6.345689e-04	k: 1329	n:2210000
SYN1   2210000 perm   2306 sec   (958 perm/sec)   p_kst 6.013575e-04   p_cons 2.617932e-01   p_joint 7.850679e-04

Joint ci ratio: 9.383008e-02	ci left: 7.487181e-04	ci right 8.228644e-04	k: 1743	n:2220000
Cons ci ratio: 4.417961e-03	ci left: 2.612123e-01	ci right 2.623694e-01	k: 581175	n:2220000
KS ci ratio: 1.072945e-01	ci left: 5.686544e-04	ci right 6.335607e-04	k: 1333	n:2220000
SYN1   2220000 perm   2325 sec   (955 perm/sec)   p_kst 6.004505e-04   p_cons 2.617905e-01   p_joint 7.851351e-04

Joint ci ratio: 9.372274e-02	ci left: 7.471122e-04	ci right 8.210103e-04	k: 1747	n:2230000
Cons ci ratio: 4.408049e-03	ci left: 2.612132e-01	ci right 2.623676e-01	k: 583792	n:2230000
KS ci ratio: 1.071741e-01	ci left: 5.674136e-04	ci right 6.321010e-04	k: 1336	n:2230000
SYN1   2230000 perm   2344 sec   (951 perm/sec)   p_kst 5.991031e-04   p_cons 2.617901e-01   p_joint 7.834081e-04

Joint ci ratio: 9.348237e-02	ci left: 7.477007e-04	ci right 8.214569e-04	k: 1756	n:2240000
Cons ci ratio: 4.398228e-03	ci left: 2.612119e-01	ci right 2.623637e-01	k: 586404	n:2240000
KS ci ratio: 1.068549e-01	ci left: 5.683563e-04	ci right 6.329461e-04	k: 1344	n:2240000
SYN1   2240000 perm   2364 sec   (948 perm/sec)   p_kst 6.000000e-04   p_cons 2.617875e-01   p_joint 7.839286e-04

Joint ci ratio: 9.334969e-02	ci left: 7.465479e-04	ci right 8.200801e-04	k: 1761	n:2250000
Cons ci ratio: 4.388362e-03	ci left: 2.612203e-01	ci right 2.623696e-01	k: 589038	n:2250000
KS ci ratio: 1.067360e-01	ci left: 5.671280e-04	ci right 6.315020e-04	k: 1347	n:2250000
SYN1   2250000 perm   2383 sec   (944 perm/sec)   p_kst 5.986667e-04   p_cons 2.617947e-01   p_joint 7.826667e-04

Joint ci ratio: 9.305960e-02	ci left: 7.479984e-04	ci right 8.214321e-04	k: 1772	n:2260000
Cons ci ratio: 4.378342e-03	ci left: 2.612482e-01	ci right 2.623949e-01	k: 591716	n:2260000
KS ci ratio: 1.064206e-01	ci left: 5.680641e-04	ci right 6.323418e-04	k: 1355	n:2260000
SYN1   2260000 perm   2402 sec   (941 perm/sec)   p_kst 5.995575e-04   p_cons 2.618212e-01   p_joint 7.840708e-04

Joint ci ratio: 8.405202e-02	ci left: 9.170257e-04	ci right 9.979125e-04	k: 2172	n:2270000
Cons ci ratio: 4.368489e-03	ci left: 2.612669e-01	ci right 2.624112e-01	k: 594374	n:2270000
KS ci ratio: 1.063423e-01	ci left: 5.664192e-04	ci right 6.304607e-04	k: 1357	n:2270000
SYN1   2270000 perm   2421 sec   (938 perm/sec)   p_kst 5.977974e-04   p_cons 2.618388e-01   p_joint 9.568282e-04

Joint ci ratio: 8.385927e-02	ci left: 9.172975e-04	ci right 9.980137e-04	k: 2182	n:2280000
Cons ci ratio: 4.358935e-03	ci left: 2.612650e-01	ci right 2.624067e-01	k: 596985	n:2280000
KS ci ratio: 1.061471e-01	ci left: 5.660696e-04	ci right 6.299468e-04	k: 1362	n:2280000
SYN1   2280000 perm   2441 sec   (934 perm/sec)   p_kst 5.973684e-04   p_cons 2.618355e-01   p_joint 9.570175e-04

Joint ci ratio: 8.475805e-02	ci left: 8.936275e-04	ci right 9.731454e-04	k: 2136	n:2290000
Cons ci ratio: 4.349645e-03	ci left: 2.612451e-01	ci right 2.623843e-01	k: 599555	n:2290000
KS ci ratio: 1.060694e-01	ci left: 5.644478e-04	ci right 6.280925e-04	k: 1364	n:2290000
SYN1   2290000 perm   2461 sec   (931 perm/sec)   p_kst 5.956332e-04   p_cons 2.618144e-01   p_joint 9.327511e-04

Joint ci ratio: 8.440317e-02	ci left: 8.974028e-04	ci right 9.769058e-04	k: 2154	n:2300000
Cons ci ratio: 4.340082e-03	ci left: 2.612550e-01	ci right 2.623917e-01	k: 602193	n:2300000
KS ci ratio: 1.055677e-01	ci left: 5.674963e-04	ci right 6.311633e-04	k: 1377	n:2300000
SYN1   2300000 perm   2480 sec   (928 perm/sec)   p_kst 5.986957e-04   p_cons 2.618230e-01   p_joint 9.365217e-04

Joint ci ratio: 8.413026e-02	ci left: 8.994509e-04	ci right 9.788650e-04	k: 2168	n:2310000
Cons ci ratio: 4.330689e-03	ci left: 2.612552e-01	ci right 2.623895e-01	k: 604809	n:2310000
KS ci ratio: 1.052246e-01	ci left: 5.688331e-04	ci right 6.324297e-04	k: 1386	n:2310000
SYN1   2310000 perm   2500 sec   (924 perm/sec)   p_kst 6.000000e-04   p_cons 2.618221e-01   p_joint 9.385281e-04

Joint ci ratio: 8.395626e-02	ci left: 8.993717e-04	ci right 9.786066e-04	k: 2177	n:2320000
Cons ci ratio: 4.321375e-03	ci left: 2.612538e-01	ci right 2.623856e-01	k: 607421	n:2320000
KS ci ratio: 1.049224e-01	ci left: 5.697389e-04	ci right 6.332426e-04	k: 1394	n:2320000
SYN1   2320000 perm   2519 sec   (921 perm/sec)   p_kst 6.008621e-04   p_cons 2.618194e-01   p_joint 9.383621e-04

Joint ci ratio: 8.389861e-02	ci left: 8.967722e-04	ci right 9.757212e-04	k: 2180	n:2330000
Cons ci ratio: 4.312461e-03	ci left: 2.612219e-01	ci right 2.623512e-01	k: 609962	n:2330000
KS ci ratio: 1.048098e-01	ci left: 5.685474e-04	ci right 6.318461e-04	k: 1397	n:2330000
SYN1   2330000 perm   2539 sec   (918 perm/sec)   p_kst 5.995708e-04   p_cons 2.617863e-01   p_joint 9.356223e-04

Joint ci ratio: 8.384109e-02	ci left: 8.941950e-04	ci right 9.728605e-04	k: 2183	n:2340000
Cons ci ratio: 4.303113e-03	ci left: 2.612343e-01	ci right 2.623612e-01	k: 612606	n:2340000
KS ci ratio: 1.046603e-01	ci left: 5.677823e-04	ci right 6.309001e-04	k: 1401	n:2340000
SYN1   2340000 perm   2558 sec   (915 perm/sec)   p_kst 5.987179e-04   p_cons 2.617974e-01   p_joint 9.329060e-04

Joint ci ratio: 8.436484e-02	ci left: 8.791419e-04	ci right 9.569900e-04	k: 2156	n:2350000
Cons ci ratio: 4.294221e-03	ci left: 2.612108e-01	ci right 2.623353e-01	k: 615166	n:2350000
KS ci ratio: 1.044742e-01	ci left: 5.674382e-04	ci right 6.303987e-04	k: 1406	n:2350000
SYN1   2350000 perm   2578 sec   (911 perm/sec)   p_kst 5.982979e-04   p_cons 2.617728e-01   p_joint 9.174468e-04

Joint ci ratio: 8.415051e-02	ci left: 8.799795e-04	ci right 9.576942e-04	k: 2167	n:2360000
Cons ci ratio: 4.284995e-03	ci left: 2.612227e-01	ci right 2.623448e-01	k: 617809	n:2360000
KS ci ratio: 1.043630e-01	ci left: 5.662718e-04	ci right 6.290319e-04	k: 1409	n:2360000
SYN1   2360000 perm   2598 sec   (908 perm/sec)   p_kst 5.970339e-04   p_cons 2.617835e-01   p_joint 9.182203e-04

Joint ci ratio: 8.393781e-02	ci left: 8.808104e-04	ci right 9.583921e-04	k: 2178	n:2370000
Cons ci ratio: 4.275805e-03	ci left: 2.612366e-01	ci right 2.623564e-01	k: 620457	n:2370000
KS ci ratio: 1.041417e-01	ci left: 5.663481e-04	ci right 6.289754e-04	k: 1415	n:2370000
SYN1   2370000 perm   2618 sec   (905 perm/sec)   p_kst 5.970464e-04   p_cons 2.617962e-01   p_joint 9.189873e-04

Joint ci ratio: 8.378417e-02	ci left: 8.804003e-04	ci right 9.577971e-04	k: 2186	n:2380000
Cons ci ratio: 4.266557e-03	ci left: 2.612609e-01	ci right 2.623784e-01	k: 623130	n:2380000
KS ci ratio: 1.038487e-01	ci left: 5.672424e-04	ci right 6.297814e-04	k: 1423	n:2380000
SYN1   2380000 perm   2638 sec   (902 perm/sec)   p_kst 5.978992e-04   p_cons 2.618193e-01   p_joint 9.184874e-04

Joint ci ratio: 8.418988e-02	ci left: 8.681144e-04	ci right 9.448187e-04	k: 2165	n:2390000
Cons ci ratio: 4.257743e-03	ci left: 2.612511e-01	ci right 2.623662e-01	k: 625722	n:2390000
KS ci ratio: 1.036669e-01	ci left: 5.669068e-04	ci right 6.292926e-04	k: 1428	n:2390000
SYN1   2390000 perm   2659 sec   (899 perm/sec)   p_kst 5.974895e-04   p_cons 2.618084e-01   p_joint 9.058577e-04

Joint ci ratio: 8.401551e-02	ci left: 8.681683e-04	ci right 9.447108e-04	k: 2174	n:2400000
Cons ci ratio: 4.248786e-03	ci left: 2.612593e-01	ci right 2.623721e-01	k: 628357	n:2400000
KS ci ratio: 1.034139e-01	ci left: 5.673858e-04	ci right 6.296628e-04	k: 1435	n:2400000
SYN1   2400000 perm   2679 sec   (896 perm/sec)   p_kst 5.979167e-04   p_cons 2.618154e-01   p_joint 9.058333e-04

Joint ci ratio: 8.422912e-02	ci left: 8.600975e-04	ci right 9.361307e-04	k: 2163	n:2410000
Cons ci ratio: 4.240044e-03	ci left: 2.612529e-01	ci right 2.623634e-01	k: 630957	n:2410000
KS ci ratio: 1.031985e-01	ci left: 5.674568e-04	ci right 6.296040e-04	k: 1441	n:2410000
SYN1   2410000 perm   2700 sec   (893 perm/sec)   p_kst 5.979253e-04   p_cons 2.618079e-01   p_joint 8.975104e-04

Joint ci ratio: 8.395789e-02	ci left: 8.622069e-04	ci right 9.381691e-04	k: 2177	n:2420000
Cons ci ratio: 4.230986e-03	ci left: 2.612805e-01	ci right 2.623887e-01	k: 633639	n:2420000
KS ci ratio: 1.029845e-01	ci left: 5.675274e-04	ci right 6.295455e-04	k: 1447	n:2420000
SYN1   2420000 perm   2720 sec   (890 perm/sec)   p_kst 5.979339e-04   p_cons 2.618343e-01   p_joint 8.995868e-04

Joint ci ratio: 7.974464e-02	ci left: 9.537933e-04	ci right 1.033412e-03	k: 2413	n:2430000
Cons ci ratio: 4.222367e-03	ci left: 2.612728e-01	ci right 2.623788e-01	k: 636236	n:2430000
KS ci ratio: 1.027011e-01	ci left: 5.683994e-04	ci right 6.303316e-04	k: 1455	n:2430000
SYN1   2430000 perm   2741 sec   (887 perm/sec)   p_kst 5.987654e-04   p_cons 2.618255e-01   p_joint 9.930041e-04

Joint ci ratio: 7.961287e-02	ci left: 9.530976e-04	ci right 1.032521e-03	k: 2421	n:2440000
Cons ci ratio: 4.213810e-03	ci left: 2.612644e-01	ci right 2.623681e-01	k: 638831	n:2440000
KS ci ratio: 1.024551e-01	ci left: 5.688652e-04	ci right 6.306907e-04	k: 1462	n:2440000
SYN1   2440000 perm   2762 sec   (883 perm/sec)   p_kst 5.991803e-04   p_cons 2.618160e-01   p_joint 9.922131e-04

Joint ci ratio: 7.944902e-02	ci left: 9.532079e-04	ci right 1.032469e-03	k: 2431	n:2450000
Cons ci ratio: 4.205322e-03	ci left: 2.612545e-01	ci right 2.623559e-01	k: 641422	n:2450000
KS ci ratio: 1.023154e-01	ci left: 5.681341e-04	ci right 6.297909e-04	k: 1466	n:2450000
SYN1   2450000 perm   2783 sec   (880 perm/sec)   p_kst 5.983673e-04   p_cons 2.618049e-01   p_joint 9.922449e-04

Joint ci ratio: 7.931870e-02	ci left: 9.525205e-04	ci right 1.031589e-03	k: 2439	n:2460000
Cons ci ratio: 4.197044e-03	ci left: 2.612300e-01	ci right 2.623291e-01	k: 643977	n:2460000
KS ci ratio: 1.020721e-01	ci left: 5.685974e-04	ci right 6.301490e-04	k: 1473	n:2460000
SYN1   2460000 perm   2805 sec   (877 perm/sec)   p_kst 5.987805e-04   p_cons 2.617793e-01   p_joint 9.914634e-04

Joint ci ratio: 8.053389e-02	ci left: 9.196996e-04	ci right 9.972676e-04	k: 2366	n:2470000
Cons ci ratio: 4.188477e-03	ci left: 2.612369e-01	ci right 2.623337e-01	k: 646609	n:2470000
KS ci ratio: 1.018994e-01	ci left: 5.682680e-04	ci right 6.296737e-04	k: 1478	n:2470000
SYN1   2470000 perm   2825 sec   (874 perm/sec)   p_kst 5.983806e-04   p_cons 2.617850e-01   p_joint 9.578947e-04

Joint ci ratio: 8.029670e-02	ci left: 9.215228e-04	ci right 9.990049e-04	k: 2380	n:2480000
Cons ci ratio: 4.179784e-03	ci left: 2.612602e-01	ci right 2.623549e-01	k: 649282	n:2480000
KS ci ratio: 1.015225e-01	ci left: 5.702993e-04	ci right 6.316830e-04	k: 1489	n:2480000
SYN1   2480000 perm   2847 sec   (871 perm/sec)   p_kst 6.004032e-04   p_cons 2.618073e-01   p_joint 9.596774e-04

Joint ci ratio: 8.016217e-02	ci left: 9.209703e-04	ci right 9.982702e-04	k: 2388	n:2490000
Cons ci ratio: 4.171248e-03	ci left: 2.612737e-01	ci right 2.623662e-01	k: 651931	n:2490000
KS ci ratio: 1.012172e-01	ci left: 5.715318e-04	ci right 6.328521e-04	k: 1498	n:2490000
SYN1   2490000 perm   2868 sec   (868 perm/sec)   p_kst 6.016064e-04   p_cons 2.618197e-01   p_joint 9.590361e-04

Joint ci ratio: 8.002831e-02	ci left: 9.204223e-04	ci right 9.975412e-04	k: 2396	n:2500000
Cons ci ratio: 4.162695e-03	ci left: 2.612935e-01	ci right 2.623838e-01	k: 654596	n:2500000
KS ci ratio: 1.010825e-01	ci left: 5.708052e-04	ci right 6.319612e-04	k: 1502	n:2500000
SYN1   2500000 perm   2888 sec   (866 perm/sec)   p_kst 6.008000e-04   p_cons 2.618384e-01   p_joint 9.584000e-04

Joint ci ratio: 8.065396e-02	ci left: 9.023100e-04	ci right 9.785302e-04	k: 2359	n:2510000
Cons ci ratio: 4.154350e-03	ci left: 2.612988e-01	ci right 2.623870e-01	k: 657225	n:2510000
KS ci ratio: 1.008813e-01	ci left: 5.708611e-04	ci right 6.318942e-04	k: 1508	n:2510000
SYN1   2510000 perm   2909 sec   (863 perm/sec)   p_kst 6.007968e-04   p_cons 2.618426e-01   p_joint 9.398406e-04

Joint ci ratio: 8.048362e-02	ci left: 9.026178e-04	ci right 9.786953e-04	k: 2369	n:2520000
Cons ci ratio: 4.146471e-03	ci left: 2.612652e-01	ci right 2.623512e-01	k: 659756	n:2520000
KS ci ratio: 1.005155e-01	ci left: 5.728510e-04	ci right 6.338616e-04	k: 1519	n:2520000
SYN1   2520000 perm   2932 sec   (860 perm/sec)   p_kst 6.027778e-04   p_cons 2.618079e-01   p_joint 9.400794e-04

Joint ci ratio: 8.033124e-02	ci left: 9.025359e-04	ci right 9.784558e-04	k: 2378	n:2530000
Cons ci ratio: 4.138226e-03	ci left: 2.612702e-01	ci right 2.623540e-01	k: 662384	n:2530000
KS ci ratio: 1.003836e-01	ci left: 5.721281e-04	ci right 6.329770e-04	k: 1523	n:2530000
SYN1   2530000 perm   2953 sec   (857 perm/sec)   p_kst 6.019763e-04   p_cons 2.618119e-01   p_joint 9.399209e-04

Joint ci ratio: 8.012936e-02	ci left: 9.036122e-04	ci right 9.794227e-04	k: 2390	n:2540000
Cons ci ratio: 4.130001e-03	ci left: 2.612779e-01	ci right 2.623596e-01	k: 665019	n:2540000
KS ci ratio: 1.002850e-01	ci left: 5.710270e-04	ci right 6.316957e-04	k: 1526	n:2540000
SYN1   2540000 perm   2974 sec   (854 perm/sec)   p_kst 6.007874e-04   p_cons 2.618185e-01   p_joint 9.409449e-04

Joint ci ratio: 8.004578e-02	ci left: 9.019901e-04	ci right 9.775819e-04	k: 2395	n:2550000
Cons ci ratio: 4.122180e-03	ci left: 2.612523e-01	ci right 2.623318e-01	k: 667569	n:2550000
KS ci ratio: 1.001212e-01	ci left: 5.706994e-04	ci right 6.312284e-04	k: 1531	n:2550000
SYN1   2550000 perm   2996 sec   (851 perm/sec)   p_kst 6.003922e-04   p_cons 2.617918e-01   p_joint 9.392157e-04

Joint ci ratio: 7.989587e-02	ci left: 9.019121e-04	ci right 9.773492e-04	k: 2404	n:2560000
Cons ci ratio: 4.114050e-03	ci left: 2.612600e-01	ci right 2.623374e-01	k: 670204	n:2560000
KS ci ratio: 9.989324e-02	ci left: 5.711361e-04	ci right 6.315654e-04	k: 1538	n:2560000
SYN1   2560000 perm   3018 sec   (848 perm/sec)   p_kst 6.007812e-04   p_cons 2.617984e-01   p_joint 9.390625e-04

Outputting figure to mutsig2_images.part000000000170/SYN1.5_2170_2560000_0.00060078_0.2618_0.00093906.png
                gene_name: SYN1
               theta_stop: 0.100 
                    nperm: 2560000 
                     p_ks: 0.00060 
        ci_ks_bounds_left: 0.00057 
       ci_ks_bounds_right: 0.00063 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.00094 
     ci_joint_bounds_left: 0.00090 
    ci_joint_bounds_right: 0.00098 

Current progress: 37 percent done.
SYNCRIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.652600e-02	ci left: 5.253654e-01	ci right 5.450141e-01	k: 5352	n:10000
KS ci ratio: 1.488668e-02	ci left: 8.673368e-01	ci right 8.804445e-01	k: 8740	n:10000
SYNCRIP   10000 perm   2 sec   (5299 perm/sec)   p_kst 8.740000e-01   p_cons 5.352000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/SYNCRIP.5_1958_10000_0.874_0.5352_1.png
                gene_name: SYNCRIP
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
SYNPO2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.280433e-02	ci left: 3.458134e-01	ci right 3.646710e-01	k: 3552	n:10000
Cons ci ratio: 4.648497e-02	ci left: 4.058169e-01	ci right 4.252323e-01	k: 4155	n:10000
KS ci ratio: 7.237715e-02	ci left: 2.185242e-01	ci right 2.350353e-01	k: 2267	n:10000
SYNPO2L   10000 perm   2 sec   (5219 perm/sec)   p_kst 2.267000e-01   p_cons 4.155000e-01   p_joint 3.552000e-01

Outputting figure to mutsig2_images.part000000000170/SYNPO2L.5_3054_10000_0.2267_0.4155_0.3552.png
                gene_name: SYNPO2L
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 40 percent done.
SYT15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.437322e-02	ci left: 2.092502e-01	ci right 2.255148e-01	k: 2173	n:10000
Cons ci ratio: 2.883840e-02	ci left: 6.393519e-01	ci right 6.581613e-01	k: 6488	n:10000
KS ci ratio: 1.050588e-01	ci left: 1.157438e-01	ci right 1.286772e-01	k: 1221	n:10000
SYT15   10000 perm   2 sec   (5994 perm/sec)   p_kst 1.221000e-01   p_cons 6.488000e-01   p_joint 2.173000e-01

Joint ci ratio: 4.754054e-02	ci left: 2.476311e-01	ci right 2.597406e-01	k: 5073	n:20000
Cons ci ratio: 1.996493e-02	ci left: 6.517797e-01	ci right 6.649742e-01	k: 13168	n:20000
KS ci ratio: 7.180058e-02	ci left: 1.250236e-01	ci right 1.343844e-01	k: 2593	n:20000
SYT15   20000 perm   4 sec   (5360 perm/sec)   p_kst 1.296500e-01   p_cons 6.584000e-01   p_joint 2.536500e-01

Outputting figure to mutsig2_images.part000000000170/SYT15.5_1352_20000_0.12965_0.6584_0.25365.png
                gene_name: SYT15
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 42 percent done.
SYT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.346779e-02	ci left: 3.401496e-01	ci right 3.589381e-01	k: 3495	n:10000
Cons ci ratio: 1.595611e-02	ci left: 8.509025e-01	ci right 8.646883e-01	k: 8579	n:10000
KS ci ratio: 7.735992e-02	ci left: 1.963361e-01	ci right 2.122365e-01	k: 2042	n:10000
SYT4   10000 perm   2 sec   (6173 perm/sec)   p_kst 2.042000e-01   p_cons 8.579000e-01   p_joint 3.495000e-01

Outputting figure to mutsig2_images.part000000000170/SYT4.5_1294_10000_0.2042_0.8579_0.3495.png
                gene_name: SYT4
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 44 percent done.
SYT9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.351292e-02	ci left: 7.266365e-01	ci right 7.440262e-01	k: 7354	n:10000
Cons ci ratio: 3.767188e-02	ci left: 5.099533e-01	ci right 5.296352e-01	k: 5198	n:10000
KS ci ratio: 4.865692e-02	ci left: 3.839072e-01	ci right 4.031548e-01	k: 3935	n:10000
SYT9   10000 perm   2 sec   (5736 perm/sec)   p_kst 3.935000e-01   p_cons 5.198000e-01   p_joint 7.354000e-01

Outputting figure to mutsig2_images.part000000000170/SYT9.5_1504_10000_0.3935_0.5198_0.7354.png
                gene_name: SYT9
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 45 percent done.
TAAR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.298170e-02	ci left: 7.355281e-01	ci right 7.527294e-01	k: 7442	n:10000
Cons ci ratio: 6.415632e-03	ci left: 9.706895e-01	ci right 9.770303e-01	k: 9740	n:10000
KS ci ratio: 3.097963e-02	ci left: 6.058827e-01	ci right 6.250500e-01	k: 6155	n:10000
TAAR6   10000 perm   1 sec   (6734 perm/sec)   p_kst 6.155000e-01   p_cons 9.740000e-01   p_joint 7.442000e-01

Outputting figure to mutsig2_images.part000000000170/TAAR6.5_1042_10000_0.6155_0.974_0.7442.png
                gene_name: TAAR6
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 47 percent done.
SYN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.359516e-02	ci left: 2.128012e-01	ci right 2.291616e-01	k: 2209	n:10000
Cons ci ratio: 1.529928e-01	ci left: 5.686952e-02	ci right 6.638783e-02	k: 615	n:10000
KS ci ratio: 3.036773e-02	ci left: 6.153256e-01	ci right 6.344016e-01	k: 6249	n:10000
SYN3   10000 perm   2 sec   (5726 perm/sec)   p_kst 6.249000e-01   p_cons 6.150000e-02   p_joint 2.209000e-01

Joint ci ratio: 6.033964e-02	ci left: 1.689662e-01	ci right 1.795287e-01	k: 3484	n:20000
Cons ci ratio: 1.162988e-01	ci left: 5.061589e-02	ci right 5.691464e-02	k: 1074	n:20000
KS ci ratio: 2.202984e-02	ci left: 6.060583e-01	ci right 6.196089e-01	k: 12257	n:20000
SYN3   20000 perm   4 sec   (5188 perm/sec)   p_kst 6.128500e-01   p_cons 5.370000e-02   p_joint 1.742000e-01

Joint ci ratio: 4.525917e-02	ci left: 1.954862e-01	ci right 2.045720e-01	k: 6000	n:30000
Cons ci ratio: 9.324420e-02	ci left: 5.303346e-02	ci right 5.825301e-02	k: 1668	n:30000
KS ci ratio: 1.722859e-02	ci left: 6.276169e-01	ci right 6.385573e-01	k: 18993	n:30000
SYN3   30000 perm   6 sec   (4965 perm/sec)   p_kst 6.331000e-01   p_cons 5.560000e-02   p_joint 2.000000e-01

Outputting figure to mutsig2_images.part000000000170/SYN3.4_1795_30000_0.6331_0.0556_0.2.png
                gene_name: SYN3
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.056 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.20 

Current progress: 48 percent done.
SYNC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.113205e-01	ci left: 7.153353e-03	ci right 1.094096e-02	k: 89	n:10000
Cons ci ratio: 3.551763e-02	ci left: 5.392844e-01	ci right 5.588870e-01	k: 5491	n:10000
KS ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
SYNC   10000 perm   2 sec   (6139 perm/sec)   p_kst 1.400000e-03   p_cons 5.491000e-01   p_joint 8.900000e-03

Joint ci ratio: 1.899469e-01	ci left: 1.886701e-02	ci right 2.287398e-02	k: 416	n:20000
Cons ci ratio: 2.456088e-02	ci left: 5.532375e-01	ci right 5.670450e-01	k: 11203	n:20000
KS ci ratio: 8.168860e-01	ci left: 6.894885e-04	ci right 1.664942e-03	k: 22	n:20000
SYNC   20000 perm   4 sec   (5558 perm/sec)   p_kst 1.100000e-03   p_cons 5.601500e-01   p_joint 2.080000e-02

Joint ci ratio: 2.074060e-01	ci left: 1.054560e-02	ci right 1.301697e-02	k: 352	n:30000
Cons ci ratio: 1.991292e-02	ci left: 5.579988e-01	ci right 5.692555e-01	k: 16909	n:30000
KS ci ratio: 6.117725e-01	ci left: 9.527184e-04	ci right 1.815184e-03	k: 40	n:30000
SYNC   30000 perm   6 sec   (5324 perm/sec)   p_kst 1.333333e-03   p_cons 5.636333e-01   p_joint 1.173333e-02

Joint ci ratio: 2.039596e-01	ci left: 8.216425e-03	ci right 1.010586e-02	k: 365	n:40000
Cons ci ratio: 1.723330e-02	ci left: 5.590984e-01	ci right 5.688423e-01	k: 22559	n:40000
KS ci ratio: 5.776328e-01	ci left: 8.206974e-04	ci right 1.505052e-03	k: 45	n:40000
SYNC   40000 perm   8 sec   (5165 perm/sec)   p_kst 1.125000e-03   p_cons 5.639750e-01   p_joint 9.125000e-03

Joint ci ratio: 2.219476e-01	ci left: 5.511867e-03	ci right 6.906397e-03	k: 309	n:50000
Cons ci ratio: 1.538819e-02	ci left: 5.604407e-01	ci right 5.691518e-01	k: 28240	n:50000
KS ci ratio: 5.144175e-01	ci left: 8.635357e-04	ci right 1.476753e-03	k: 57	n:50000
SYNC   50000 perm   10 sec   (5020 perm/sec)   p_kst 1.140000e-03   p_cons 5.648000e-01   p_joint 6.180000e-03

Joint ci ratio: 2.062681e-01	ci left: 5.366103e-03	ci right 6.615741e-03	k: 358	n:60000
Cons ci ratio: 1.406178e-02	ci left: 5.603211e-01	ci right 5.682727e-01	k: 33858	n:60000
KS ci ratio: 4.554059e-01	ci left: 9.537900e-04	ci right 1.529536e-03	k: 73	n:60000
SYNC   60000 perm   12 sec   (4924 perm/sec)   p_kst 1.216667e-03   p_cons 5.643000e-01   p_joint 5.966667e-03

Joint ci ratio: 2.102175e-01	ci left: 4.423254e-03	ci right 5.475570e-03	k: 345	n:70000
Cons ci ratio: 1.301871e-02	ci left: 5.606170e-01	ci right 5.679776e-01	k: 39501	n:70000
KS ci ratio: 4.300177e-01	ci left: 9.317770e-04	ci right 1.453846e-03	k: 82	n:70000
SYNC   70000 perm   15 sec   (4820 perm/sec)   p_kst 1.171429e-03   p_cons 5.643000e-01   p_joint 4.928571e-03

Joint ci ratio: 2.229310e-01	ci left: 3.420885e-03	ci right 4.290704e-03	k: 307	n:80000
Cons ci ratio: 1.215596e-02	ci left: 5.617438e-01	ci right 5.686265e-01	k: 45215	n:80000
KS ci ratio: 3.898058e-01	ci left: 1.017162e-03	ci right 1.520129e-03	k: 100	n:80000
SYNC   80000 perm   17 sec   (4716 perm/sec)   p_kst 1.250000e-03   p_cons 5.651875e-01   p_joint 3.837500e-03

Joint ci ratio: 1.589655e-01	ci left: 6.177421e-03	ci right 7.254743e-03	k: 603	n:90000
Cons ci ratio: 1.145477e-02	ci left: 5.621983e-01	ci right 5.686864e-01	k: 50890	n:90000
KS ci ratio: 3.532109e-01	ci left: 1.125830e-03	ci right 1.618322e-03	k: 122	n:90000
SYNC   90000 perm   19 sec   (4617 perm/sec)   p_kst 1.355556e-03   p_cons 5.654444e-01   p_joint 6.700000e-03

Joint ci ratio: 1.578405e-01	ci left: 5.645987e-03	ci right 6.622991e-03	k: 612	n:100000
Cons ci ratio: 1.086110e-02	ci left: 5.626310e-01	ci right 5.687852e-01	k: 56571	n:100000
KS ci ratio: 3.476211e-01	ci left: 1.049719e-03	ci right 1.500010e-03	k: 126	n:100000
SYNC   100000 perm   22 sec   (4525 perm/sec)   p_kst 1.260000e-03   p_cons 5.657100e-01   p_joint 6.120000e-03

Joint ci ratio: 1.525926e-01	ci left: 5.508413e-03	ci right 6.427019e-03	k: 655	n:110000
Cons ci ratio: 1.035702e-02	ci left: 5.627100e-01	ci right 5.685774e-01	k: 62221	n:110000
KS ci ratio: 3.220037e-01	ci left: 1.129181e-03	ci right 1.570512e-03	k: 147	n:110000
SYNC   110000 perm   25 sec   (4440 perm/sec)   p_kst 1.336364e-03   p_cons 5.656455e-01   p_joint 5.954545e-03

Joint ci ratio: 1.583116e-01	ci left: 4.680791e-03	ci right 5.493410e-03	k: 609	n:120000
Cons ci ratio: 9.906093e-03	ci left: 5.633318e-01	ci right 5.689483e-01	k: 67937	n:120000
KS ci ratio: 3.136458e-01	ci left: 1.096429e-03	ci right 1.511608e-03	k: 155	n:120000
SYNC   120000 perm   28 sec   (4359 perm/sec)   p_kst 1.291667e-03   p_cons 5.661417e-01   p_joint 5.075000e-03

Joint ci ratio: 1.603355e-01	ci left: 4.209863e-03	ci right 4.950964e-03	k: 594	n:130000
Cons ci ratio: 9.516344e-03	ci left: 5.635006e-01	ci right 5.688964e-01	k: 73606	n:130000
KS ci ratio: 3.013412e-01	ci left: 1.104376e-03	ci right 1.503019e-03	k: 168	n:130000
SYNC   130000 perm   30 sec   (4282 perm/sec)   p_kst 1.292308e-03   p_cons 5.662000e-01   p_joint 4.569231e-03

Joint ci ratio: 1.618715e-01	ci left: 3.833694e-03	ci right 4.515665e-03	k: 583	n:140000
Cons ci ratio: 9.160588e-03	ci left: 5.641137e-01	ci right 5.693121e-01	k: 79340	n:140000
KS ci ratio: 2.887952e-01	ci left: 1.124710e-03	ci right 1.510706e-03	k: 183	n:140000
SYNC   140000 perm   33 sec   (4209 perm/sec)   p_kst 1.307143e-03   p_cons 5.667143e-01   p_joint 4.164286e-03

Joint ci ratio: 1.555999e-01	ci left: 3.885414e-03	ci right 4.547309e-03	k: 631	n:150000
Cons ci ratio: 8.854677e-03	ci left: 5.639409e-01	ci right 5.689632e-01	k: 84968	n:150000
KS ci ratio: 2.756235e-01	ci left: 1.161244e-03	ci right 1.538454e-03	k: 201	n:150000
SYNC   150000 perm   36 sec   (4143 perm/sec)   p_kst 1.340000e-03   p_cons 5.664533e-01   p_joint 4.206667e-03

Joint ci ratio: 1.519240e-01	ci left: 3.828863e-03	ci right 4.464312e-03	k: 662	n:160000
Cons ci ratio: 8.560047e-03	ci left: 5.647930e-01	ci right 5.696546e-01	k: 90756	n:160000
KS ci ratio: 2.703273e-01	ci left: 1.135243e-03	ci right 1.495718e-03	k: 209	n:160000
SYNC   160000 perm   39 sec   (4080 perm/sec)   p_kst 1.306250e-03   p_cons 5.672250e-01   p_joint 4.137500e-03

Joint ci ratio: 1.539366e-01	ci left: 3.507417e-03	ci right 4.097939e-03	k: 645	n:170000
Cons ci ratio: 8.314946e-03	ci left: 5.642462e-01	ci right 5.689633e-01	k: 96323	n:170000
KS ci ratio: 2.629206e-01	ci left: 1.134334e-03	ci right 1.483030e-03	k: 221	n:170000
SYNC   170000 perm   43 sec   (3914 perm/sec)   p_kst 1.300000e-03   p_cons 5.666059e-01   p_joint 3.794118e-03

Joint ci ratio: 1.490536e-01	ci left: 3.542400e-03	ci right 4.118207e-03	k: 688	n:180000
Cons ci ratio: 8.085895e-03	ci left: 5.639956e-01	ci right 5.685800e-01	k: 101932	n:180000
KS ci ratio: 2.560911e-01	ci left: 1.133647e-03	ci right 1.471632e-03	k: 233	n:180000
SYNC   180000 perm   47 sec   (3855 perm/sec)   p_kst 1.294444e-03   p_cons 5.662889e-01   p_joint 3.822222e-03

Joint ci ratio: 1.502775e-01	ci left: 3.300200e-03	ci right 3.841437e-03	k: 677	n:190000
Cons ci ratio: 7.869636e-03	ci left: 5.640943e-01	ci right 5.685563e-01	k: 107602	n:190000
KS ci ratio: 2.477588e-01	ci left: 1.152878e-03	ci right 1.483691e-03	k: 249	n:190000
SYNC   190000 perm   50 sec   (3803 perm/sec)   p_kst 1.310526e-03   p_cons 5.663263e-01   p_joint 3.563158e-03

Joint ci ratio: 1.462344e-01	ci left: 3.318144e-03	ci right 3.846405e-03	k: 715	n:200000
Cons ci ratio: 7.675315e-03	ci left: 5.638344e-01	ci right 5.681837e-01	k: 113202	n:200000
KS ci ratio: 2.420191e-01	ci left: 1.151552e-03	ci right 1.473181e-03	k: 261	n:200000
SYNC   200000 perm   53 sec   (3752 perm/sec)   p_kst 1.305000e-03   p_cons 5.660100e-01   p_joint 3.575000e-03

Joint ci ratio: 1.632510e-01	ci left: 2.514540e-03	ci right 2.966026e-03	k: 574	n:210000
Cons ci ratio: 7.489406e-03	ci left: 5.639484e-01	ci right 5.681926e-01	k: 118875	n:210000
KS ci ratio: 2.388529e-01	ci left: 1.128040e-03	ci right 1.438370e-03	k: 268	n:210000
SYNC   210000 perm   57 sec   (3699 perm/sec)   p_kst 1.276190e-03   p_cons 5.660714e-01   p_joint 2.733333e-03

Joint ci ratio: 1.655872e-01	ci left: 2.330490e-03	ci right 2.755514e-03	k: 558	n:220000
Cons ci ratio: 7.314962e-03	ci left: 5.641487e-01	ci right 5.682950e-01	k: 124569	n:220000
KS ci ratio: 2.341152e-01	ci left: 1.123803e-03	ci right 1.425947e-03	k: 279	n:220000
SYNC   220000 perm   61 sec   (3634 perm/sec)   p_kst 1.268182e-03   p_cons 5.662227e-01   p_joint 2.536364e-03

Joint ci ratio: 1.636991e-01	ci left: 2.283352e-03	ci right 2.694563e-03	k: 571	n:230000
Cons ci ratio: 7.155266e-03	ci left: 5.641194e-01	ci right 5.681746e-01	k: 130214	n:230000
KS ci ratio: 2.288624e-01	ci left: 1.128186e-03	ci right 1.423743e-03	k: 292	n:230000
SYNC   230000 perm   64 sec   (3587 perm/sec)   p_kst 1.269565e-03   p_cons 5.661478e-01   p_joint 2.482609e-03

Joint ci ratio: 1.611850e-01	ci left: 2.260161e-03	ci right 2.660339e-03	k: 589	n:240000
Cons ci ratio: 7.004523e-03	ci left: 5.641685e-01	ci right 5.681382e-01	k: 135877	n:240000
KS ci ratio: 2.250554e-01	ci left: 1.120476e-03	ci right 1.408452e-03	k: 302	n:240000
SYNC   240000 perm   68 sec   (3538 perm/sec)   p_kst 1.258333e-03   p_cons 5.661542e-01   p_joint 2.454167e-03

Joint ci ratio: 1.187479e-01	ci left: 4.082200e-03	ci right 4.601394e-03	k: 1084	n:250000
Cons ci ratio: 6.862979e-03	ci left: 5.642105e-01	ci right 5.681000e-01	k: 141539	n:250000
KS ci ratio: 2.193374e-01	ci left: 1.136097e-03	ci right 1.419669e-03	k: 318	n:250000
SYNC   250000 perm   72 sec   (3494 perm/sec)   p_kst 1.272000e-03   p_cons 5.661560e-01   p_joint 4.336000e-03

Joint ci ratio: 1.276247e-01	ci left: 3.384584e-03	ci right 3.849667e-03	k: 939	n:260000
Cons ci ratio: 6.729946e-03	ci left: 5.642308e-01	ci right 5.680447e-01	k: 147196	n:260000
KS ci ratio: 2.153251e-01	ci left: 1.136042e-03	ci right 1.413728e-03	k: 330	n:260000
SYNC   260000 perm   75 sec   (3450 perm/sec)   p_kst 1.269231e-03   p_cons 5.661385e-01   p_joint 3.611538e-03

Joint ci ratio: 1.307403e-01	ci left: 3.101502e-03	ci right 3.538897e-03	k: 895	n:270000
Cons ci ratio: 6.599732e-03	ci left: 5.645949e-01	ci right 5.683370e-01	k: 152946	n:270000
KS ci ratio: 2.106050e-01	ci left: 1.146560e-03	ci right 1.419881e-03	k: 345	n:270000
SYNC   270000 perm   79 sec   (3409 perm/sec)   p_kst 1.277778e-03   p_cons 5.664667e-01   p_joint 3.314815e-03

Joint ci ratio: 1.288854e-01	ci left: 3.080573e-03	ci right 3.508381e-03	k: 921	n:280000
Cons ci ratio: 6.479050e-03	ci left: 5.647620e-01	ci right 5.684366e-01	k: 158648	n:280000
KS ci ratio: 2.076271e-01	ci left: 1.139455e-03	ci right 1.406754e-03	k: 355	n:280000
SYNC   280000 perm   83 sec   (3370 perm/sec)   p_kst 1.267857e-03   p_cons 5.666000e-01   p_joint 3.289286e-03

Joint ci ratio: 1.306822e-01	ci left: 2.890920e-03	ci right 3.298421e-03	k: 896	n:290000
Cons ci ratio: 6.369045e-03	ci left: 5.645871e-01	ci right 5.681978e-01	k: 164254	n:290000
KS ci ratio: 2.039368e-01	ci left: 1.142682e-03	ci right 1.405379e-03	k: 368	n:290000
SYNC   290000 perm   87 sec   (3333 perm/sec)   p_kst 1.268966e-03   p_cons 5.663931e-01   p_joint 3.089655e-03

Joint ci ratio: 1.242540e-01	ci left: 3.101151e-03	ci right 3.515202e-03	k: 991	n:300000
Cons ci ratio: 6.260718e-03	ci left: 5.647177e-01	ci right 5.682677e-01	k: 169948	n:300000
KS ci ratio: 2.012293e-01	ci left: 1.136234e-03	ci right 1.393555e-03	k: 378	n:300000
SYNC   300000 perm   91 sec   (3295 perm/sec)   p_kst 1.260000e-03   p_cons 5.664933e-01   p_joint 3.303333e-03

Joint ci ratio: 1.248937e-01	ci left: 2.969848e-03	ci right 3.368561e-03	k: 981	n:310000
Cons ci ratio: 6.155835e-03	ci left: 5.649921e-01	ci right 5.684840e-01	k: 175689	n:310000
KS ci ratio: 1.978644e-01	ci left: 1.139422e-03	ci right 1.392630e-03	k: 391	n:310000
SYNC   310000 perm   95 sec   (3258 perm/sec)   p_kst 1.261290e-03   p_cons 5.667387e-01   p_joint 3.164516e-03

Joint ci ratio: 1.229680e-01	ci left: 2.970913e-03	ci right 3.363170e-03	k: 1012	n:320000
Cons ci ratio: 6.063338e-03	ci left: 5.646589e-01	ci right 5.680961e-01	k: 181241	n:320000
KS ci ratio: 1.951458e-01	ci left: 1.136499e-03	ci right 1.385174e-03	k: 402	n:320000
SYNC   320000 perm   99 sec   (3224 perm/sec)   p_kst 1.256250e-03   p_cons 5.663781e-01   p_joint 3.162500e-03

Joint ci ratio: 9.548003e-02	ci left: 4.839097e-03	ci right 5.327232e-03	k: 1676	n:330000
Cons ci ratio: 5.972744e-03	ci left: 5.645222e-01	ci right 5.679070e-01	k: 186851	n:330000
KS ci ratio: 1.923039e-01	ci left: 1.136659e-03	ci right 1.381325e-03	k: 414	n:330000
SYNC   330000 perm   103 sec   (3189 perm/sec)   p_kst 1.254545e-03   p_cons 5.662152e-01   p_joint 5.078788e-03

Joint ci ratio: 9.752433e-02	ci left: 4.498688e-03	ci right 4.962756e-03	k: 1607	n:340000
Cons ci ratio: 5.883450e-03	ci left: 5.646145e-01	ci right 5.679491e-01	k: 192536	n:340000
KS ci ratio: 1.891397e-01	ci left: 1.142439e-03	ci right 1.383837e-03	k: 428	n:340000
SYNC   340000 perm   108 sec   (3155 perm/sec)   p_kst 1.258824e-03   p_cons 5.662824e-01   p_joint 4.726471e-03

Joint ci ratio: 9.867803e-02	ci left: 4.267009e-03	ci right 4.712685e-03	k: 1570	n:350000
Cons ci ratio: 5.800237e-03	ci left: 5.645161e-01	ci right 5.678028e-01	k: 198156	n:350000
KS ci ratio: 1.863373e-01	ci left: 1.145195e-03	ci right 1.383185e-03	k: 441	n:350000
SYNC   350000 perm   112 sec   (3120 perm/sec)   p_kst 1.260000e-03   p_cons 5.661600e-01   p_joint 4.485714e-03

Joint ci ratio: 9.824550e-02	ci left: 4.186403e-03	ci right 4.621633e-03	k: 1584	n:360000
Cons ci ratio: 5.718742e-03	ci left: 5.645708e-01	ci right 5.678114e-01	k: 203829	n:360000
KS ci ratio: 1.836560e-01	ci left: 1.147823e-03	ci right 1.382545e-03	k: 454	n:360000
SYNC   360000 perm   117 sec   (3085 perm/sec)   p_kst 1.261111e-03   p_cons 5.661917e-01   p_joint 4.400000e-03

Joint ci ratio: 9.812710e-02	ci left: 4.083792e-03	ci right 4.507813e-03	k: 1588	n:370000
Cons ci ratio: 5.641955e-03	ci left: 5.645039e-01	ci right 5.677005e-01	k: 209458	n:370000
KS ci ratio: 1.818670e-01	ci left: 1.140012e-03	ci right 1.370615e-03	k: 463	n:370000
SYNC   370000 perm   121 sec   (3051 perm/sec)   p_kst 1.251351e-03   p_cons 5.661027e-01   p_joint 4.291892e-03

Joint ci ratio: 9.816370e-02	ci left: 3.973746e-03	ci right 4.386503e-03	k: 1587	n:380000
Cons ci ratio: 5.568329e-03	ci left: 5.644276e-01	ci right 5.675819e-01	k: 215082	n:380000
KS ci ratio: 1.799390e-01	ci left: 1.135136e-03	ci right 1.362053e-03	k: 473	n:380000
SYNC   380000 perm   126 sec   (3016 perm/sec)   p_kst 1.244737e-03   p_cons 5.660053e-01   p_joint 4.176316e-03

Joint ci ratio: 1.056823e-01	ci left: 3.329549e-03	ci right 3.703528e-03	k: 1370	n:390000
Cons ci ratio: 5.495044e-03	ci left: 5.645761e-01	ci right 5.676896e-01	k: 220792	n:390000
KS ci ratio: 1.771571e-01	ci left: 1.142773e-03	ci right 1.367307e-03	k: 488	n:390000
SYNC   390000 perm   131 sec   (2982 perm/sec)   p_kst 1.251282e-03   p_cons 5.661333e-01   p_joint 3.512821e-03

Joint ci ratio: 1.050355e-01	ci left: 3.287687e-03	ci right 3.654564e-03	k: 1387	n:400000
Cons ci ratio: 5.427035e-03	ci left: 5.644949e-01	ci right 5.675692e-01	k: 226413	n:400000
KS ci ratio: 1.748481e-01	ci left: 1.145272e-03	ci right 1.367054e-03	k: 501	n:400000
SYNC   400000 perm   136 sec   (2944 perm/sec)   p_kst 1.252500e-03   p_cons 5.660325e-01   p_joint 3.467500e-03

Joint ci ratio: 1.044004e-01	ci left: 3.247873e-03	ci right 3.607981e-03	k: 1404	n:410000
Cons ci ratio: 5.359707e-03	ci left: 5.645813e-01	ci right 5.676178e-01	k: 232101	n:410000
KS ci ratio: 1.729637e-01	ci left: 1.143000e-03	ci right 1.361708e-03	k: 512	n:410000
SYNC   410000 perm   141 sec   (2911 perm/sec)   p_kst 1.248780e-03   p_cons 5.661000e-01   p_joint 3.424390e-03

Joint ci ratio: 9.951305e-02	ci left: 3.497723e-03	ci right 3.866319e-03	k: 1545	n:420000
Cons ci ratio: 5.293003e-03	ci left: 5.648329e-01	ci right 5.678328e-01	k: 237860	n:420000
KS ci ratio: 1.665854e-01	ci left: 1.206982e-03	ci right 1.428561e-03	k: 552	n:420000
SYNC   420000 perm   146 sec   (2881 perm/sec)   p_kst 1.314286e-03   p_cons 5.663333e-01   p_joint 3.678571e-03

Joint ci ratio: 9.894092e-02	ci left: 3.457199e-03	ci right 3.819308e-03	k: 1563	n:430000
Cons ci ratio: 5.231326e-03	ci left: 5.648288e-01	ci right 5.677936e-01	k: 243514	n:430000
KS ci ratio: 1.653943e-01	ci left: 1.196743e-03	ci right 1.414717e-03	k: 560	n:430000
SYNC   430000 perm   151 sec   (2851 perm/sec)   p_kst 1.302326e-03   p_cons 5.663116e-01   p_joint 3.634884e-03

Joint ci ratio: 1.020357e-01	ci left: 3.172549e-03	ci right 3.515861e-03	k: 1470	n:440000
Cons ci ratio: 5.171062e-03	ci left: 5.648909e-01	ci right 5.678218e-01	k: 249197	n:440000
KS ci ratio: 1.632262e-01	ci left: 1.202234e-03	ci right 1.418055e-03	k: 575	n:440000
SYNC   440000 perm   156 sec   (2820 perm/sec)   p_kst 1.306818e-03   p_cons 5.663568e-01   p_joint 3.340909e-03

Joint ci ratio: 1.010112e-01	ci left: 3.167022e-03	ci right 3.506090e-03	k: 1500	n:450000
Cons ci ratio: 5.111307e-03	ci left: 5.650973e-01	ci right 5.679952e-01	k: 254946	n:450000
KS ci ratio: 1.618281e-01	ci left: 1.196836e-03	ci right 1.409668e-03	k: 585	n:450000
SYNC   450000 perm   161 sec   (2788 perm/sec)   p_kst 1.300000e-03   p_cons 5.665467e-01   p_joint 3.333333e-03

Joint ci ratio: 1.019042e-01	ci left: 3.043076e-03	ci right 3.371926e-03	k: 1474	n:460000
Cons ci ratio: 5.056909e-03	ci left: 5.649707e-01	ci right 5.678371e-01	k: 260546	n:460000
KS ci ratio: 1.603306e-01	ci left: 1.193767e-03	ci right 1.403900e-03	k: 596	n:460000
SYNC   460000 perm   167 sec   (2760 perm/sec)   p_kst 1.295652e-03   p_cons 5.664043e-01   p_joint 3.204348e-03

Joint ci ratio: 9.221809e-02	ci left: 3.653124e-03	ci right 4.008354e-03	k: 1799	n:470000
Cons ci ratio: 5.002218e-03	ci left: 5.650456e-01	ci right 5.678812e-01	k: 266238	n:470000
KS ci ratio: 1.574541e-01	ci left: 1.213316e-03	ci right 1.422697e-03	k: 618	n:470000
SYNC   470000 perm   172 sec   (2731 perm/sec)   p_kst 1.314894e-03   p_cons 5.664638e-01   p_joint 3.827660e-03

Joint ci ratio: 9.138472e-02	ci left: 3.644188e-03	ci right 3.995176e-03	k: 1832	n:480000
Cons ci ratio: 4.949746e-03	ci left: 5.650696e-01	ci right 5.678755e-01	k: 271907	n:480000
KS ci ratio: 1.561980e-01	ci left: 1.208054e-03	ci right 1.414708e-03	k: 628	n:480000
SYNC   480000 perm   178 sec   (2704 perm/sec)   p_kst 1.308333e-03   p_cons 5.664729e-01   p_joint 3.816667e-03

Joint ci ratio: 9.072006e-02	ci left: 3.623663e-03	ci right 3.970000e-03	k: 1859	n:490000
Cons ci ratio: 4.896815e-03	ci left: 5.653009e-01	ci right 5.680779e-01	k: 277678	n:490000
KS ci ratio: 1.548502e-01	ci left: 1.204975e-03	ci right 1.409158e-03	k: 639	n:490000
SYNC   490000 perm   183 sec   (2677 perm/sec)   p_kst 1.304082e-03   p_cons 5.666898e-01   p_joint 3.793878e-03

Joint ci ratio: 9.014163e-02	ci left: 3.598102e-03	ci right 3.939688e-03	k: 1883	n:500000
Cons ci ratio: 4.847440e-03	ci left: 5.653311e-01	ci right 5.680801e-01	k: 283353	n:500000
KS ci ratio: 1.536549e-01	ci left: 1.200103e-03	ci right 1.401747e-03	k: 649	n:500000
SYNC   500000 perm   189 sec   (2649 perm/sec)   p_kst 1.298000e-03   p_cons 5.667060e-01   p_joint 3.766000e-03

Joint ci ratio: 8.919949e-02	ci left: 3.604224e-03	ci right 3.942628e-03	k: 1923	n:510000
Cons ci ratio: 4.798341e-03	ci left: 5.654818e-01	ci right 5.682037e-01	k: 289090	n:510000
KS ci ratio: 1.519118e-01	ci left: 1.204859e-03	ci right 1.404797e-03	k: 664	n:510000
SYNC   510000 perm   195 sec   (2621 perm/sec)   p_kst 1.301961e-03   p_cons 5.668431e-01   p_joint 3.770588e-03

Joint ci ratio: 9.055917e-02	ci left: 3.427746e-03	ci right 3.754746e-03	k: 1866	n:520000
Cons ci ratio: 4.751913e-03	ci left: 5.655019e-01	ci right 5.681974e-01	k: 294762	n:520000
KS ci ratio: 1.497862e-01	ci left: 1.216849e-03	ci right 1.415697e-03	k: 683	n:520000
SYNC   520000 perm   200 sec   (2596 perm/sec)   p_kst 1.313462e-03   p_cons 5.668500e-01   p_joint 3.588462e-03

Joint ci ratio: 9.288766e-02	ci left: 3.193450e-03	ci right 3.506358e-03	k: 1774	n:530000
Cons ci ratio: 4.705342e-03	ci left: 5.656742e-01	ci right 5.683440e-01	k: 300515	n:530000
KS ci ratio: 1.489186e-01	ci left: 1.208419e-03	ci right 1.404644e-03	k: 691	n:530000
SYNC   530000 perm   206 sec   (2572 perm/sec)   p_kst 1.303774e-03   p_cons 5.670094e-01   p_joint 3.347170e-03

Joint ci ratio: 9.236989e-02	ci left: 3.170489e-03	ci right 3.479322e-03	k: 1794	n:540000
Cons ci ratio: 4.662627e-03	ci left: 5.655753e-01	ci right 5.682203e-01	k: 306125	n:540000
KS ci ratio: 1.478545e-01	ci left: 1.203872e-03	ci right 1.397838e-03	k: 701	n:540000
SYNC   540000 perm   212 sec   (2548 perm/sec)   p_kst 1.298148e-03   p_cons 5.668981e-01   p_joint 3.322222e-03

Joint ci ratio: 9.163300e-02	ci left: 3.164358e-03	ci right 3.470002e-03	k: 1823	n:550000
Cons ci ratio: 4.619823e-03	ci left: 5.656110e-01	ci right 5.682319e-01	k: 311807	n:550000
KS ci ratio: 1.467098e-01	ci left: 1.201246e-03	ci right 1.393160e-03	k: 712	n:550000
SYNC   550000 perm   218 sec   (2524 perm/sec)   p_kst 1.294545e-03   p_cons 5.669218e-01   p_joint 3.314545e-03

Joint ci ratio: 9.123513e-02	ci left: 3.135767e-03	ci right 3.437265e-03	k: 1839	n:560000
Cons ci ratio: 4.578559e-03	ci left: 5.656046e-01	ci right 5.682019e-01	k: 317466	n:560000
KS ci ratio: 1.451903e-01	ci left: 1.205603e-03	ci right 1.396045e-03	k: 727	n:560000
SYNC   560000 perm   224 sec   (2501 perm/sec)   p_kst 1.298214e-03   p_cons 5.669036e-01   p_joint 3.283929e-03

Joint ci ratio: 9.050057e-02	ci left: 3.132189e-03	ci right 3.430789e-03	k: 1869	n:570000
Cons ci ratio: 4.538154e-03	ci left: 5.656230e-01	ci right 5.681974e-01	k: 323139	n:570000
KS ci ratio: 1.443015e-01	ci left: 1.199670e-03	ci right 1.387914e-03	k: 736	n:570000
SYNC   570000 perm   230 sec   (2477 perm/sec)   p_kst 1.291228e-03   p_cons 5.669105e-01   p_joint 3.278947e-03

Joint ci ratio: 8.968880e-02	ci left: 3.135486e-03	ci right 3.431579e-03	k: 1903	n:580000
Cons ci ratio: 4.499038e-03	ci left: 5.656150e-01	ci right 5.681671e-01	k: 328797	n:580000
KS ci ratio: 1.429501e-01	ci left: 1.202256e-03	ci right 1.388989e-03	k: 750	n:580000
SYNC   580000 perm   236 sec   (2454 perm/sec)   p_kst 1.293103e-03   p_cons 5.668914e-01   p_joint 3.281034e-03

Joint ci ratio: 8.901377e-02	ci left: 3.130396e-03	ci right 3.423667e-03	k: 1932	n:590000
Cons ci ratio: 4.459284e-03	ci left: 5.657871e-01	ci right 5.683174e-01	k: 334561	n:590000
KS ci ratio: 1.419148e-01	ci left: 1.199859e-03	ci right 1.384755e-03	k: 761	n:590000
SYNC   590000 perm   243 sec   (2431 perm/sec)   p_kst 1.289831e-03   p_cons 5.670525e-01   p_joint 3.274576e-03

Joint ci ratio: 8.983583e-02	ci left: 3.021186e-03	ci right 3.306978e-03	k: 1897	n:600000
Cons ci ratio: 4.421149e-03	ci left: 5.658885e-01	ci right 5.683975e-01	k: 340286	n:600000
KS ci ratio: 1.409016e-01	ci left: 1.197546e-03	ci right 1.380658e-03	k: 772	n:600000
SYNC   600000 perm   249 sec   (2409 perm/sec)   p_kst 1.286667e-03   p_cons 5.671433e-01   p_joint 3.161667e-03

Joint ci ratio: 9.236177e-02	ci left: 2.808240e-03	ci right 3.081760e-03	k: 1795	n:610000
Cons ci ratio: 4.384474e-03	ci left: 5.659309e-01	ci right 5.684193e-01	k: 345977	n:610000
KS ci ratio: 1.397315e-01	ci left: 1.198477e-03	ci right 1.380083e-03	k: 785	n:610000
SYNC   610000 perm   256 sec   (2387 perm/sec)   p_kst 1.286885e-03   p_cons 5.671754e-01   p_joint 2.942623e-03

Joint ci ratio: 9.251909e-02	ci left: 2.753489e-03	ci right 3.022157e-03	k: 1789	n:620000
Cons ci ratio: 4.348940e-03	ci left: 5.659446e-01	ci right 5.684128e-01	k: 351651	n:620000
KS ci ratio: 1.387641e-01	ci left: 1.196270e-03	ci right 1.376183e-03	k: 796	n:620000
SYNC   620000 perm   262 sec   (2366 perm/sec)   p_kst 1.283871e-03   p_cons 5.671790e-01   p_joint 2.885484e-03

Joint ci ratio: 8.560340e-02	ci left: 3.175411e-03	ci right 3.460933e-03	k: 2089	n:630000
Cons ci ratio: 4.315763e-03	ci left: 5.657865e-01	ci right 5.682351e-01	k: 357217	n:630000
KS ci ratio: 1.371384e-01	ci left: 1.206400e-03	ci right 1.385538e-03	k: 815	n:630000
SYNC   630000 perm   269 sec   (2343 perm/sec)   p_kst 1.293651e-03   p_cons 5.670111e-01   p_joint 3.315873e-03

Joint ci ratio: 8.491543e-02	ci left: 3.177788e-03	ci right 3.461113e-03	k: 2123	n:640000
Cons ci ratio: 4.281002e-03	ci left: 5.659007e-01	ci right 5.683300e-01	k: 362954	n:640000
KS ci ratio: 1.363888e-01	ci left: 1.201131e-03	ci right 1.378432e-03	k: 824	n:640000
SYNC   640000 perm   276 sec   (2323 perm/sec)   p_kst 1.287500e-03   p_cons 5.671156e-01   p_joint 3.317187e-03

Joint ci ratio: 8.511887e-02	ci left: 3.113837e-03	ci right 3.392158e-03	k: 2113	n:650000
Cons ci ratio: 4.248238e-03	ci left: 5.658759e-01	ci right 5.682865e-01	k: 368603	n:650000
KS ci ratio: 1.349243e-01	ci left: 1.209405e-03	ci right 1.385857e-03	k: 842	n:650000
SYNC   650000 perm   282 sec   (2301 perm/sec)   p_kst 1.295385e-03   p_cons 5.670815e-01   p_joint 3.250769e-03

Joint ci ratio: 8.456100e-02	ci left: 3.108181e-03	ci right 3.384086e-03	k: 2141	n:660000
Cons ci ratio: 4.215617e-03	ci left: 5.659218e-01	ci right 5.683140e-01	k: 374298	n:660000
KS ci ratio: 1.341314e-01	ci left: 1.205722e-03	ci right 1.380520e-03	k: 852	n:660000
SYNC   660000 perm   289 sec   (2280 perm/sec)   p_kst 1.290909e-03   p_cons 5.671182e-01   p_joint 3.243939e-03

Joint ci ratio: 8.446422e-02	ci left: 3.069093e-03	ci right 3.341201e-03	k: 2146	n:670000
Cons ci ratio: 4.183749e-03	ci left: 5.659648e-01	ci right 5.683391e-01	k: 379992	n:670000
KS ci ratio: 1.334297e-01	ci left: 1.200710e-03	ci right 1.373798e-03	k: 861	n:670000
SYNC   670000 perm   296 sec   (2260 perm/sec)   p_kst 1.285075e-03   p_cons 5.671522e-01   p_joint 3.202985e-03

Joint ci ratio: 8.380315e-02	ci left: 3.072907e-03	ci right 3.343117e-03	k: 2180	n:680000
Cons ci ratio: 4.152866e-03	ci left: 5.659743e-01	ci right 5.683310e-01	k: 385664	n:680000
KS ci ratio: 1.324348e-01	ci left: 1.201534e-03	ci right 1.373348e-03	k: 874	n:680000
SYNC   680000 perm   303 sec   (2241 perm/sec)   p_kst 1.285294e-03   p_cons 5.671529e-01   p_joint 3.205882e-03

Joint ci ratio: 8.313853e-02	ci left: 3.078038e-03	ci right 3.346449e-03	k: 2215	n:690000
Cons ci ratio: 4.122548e-03	ci left: 5.659966e-01	ci right 5.683362e-01	k: 391345	n:690000
KS ci ratio: 1.313138e-01	ci left: 1.205143e-03	ci right 1.375900e-03	k: 889	n:690000
SYNC   690000 perm   310 sec   (2222 perm/sec)   p_kst 1.288406e-03   p_cons 5.671667e-01   p_joint 3.210145e-03

Joint ci ratio: 8.254469e-02	ci left: 3.078834e-03	ci right 3.345304e-03	k: 2247	n:700000
Cons ci ratio: 4.093694e-03	ci left: 5.659212e-01	ci right 5.682440e-01	k: 396958	n:700000
KS ci ratio: 1.306552e-01	ci left: 1.200362e-03	ci right 1.369523e-03	k: 898	n:700000
SYNC   700000 perm   318 sec   (2204 perm/sec)   p_kst 1.282857e-03   p_cons 5.670829e-01   p_joint 3.210000e-03

Joint ci ratio: 7.777933e-02	ci left: 3.426101e-03	ci right 3.704734e-03	k: 2530	n:710000
Cons ci ratio: 4.065636e-03	ci left: 5.658239e-01	ci right 5.681304e-01	k: 402554	n:710000
KS ci ratio: 1.299348e-01	ci left: 1.197081e-03	ci right 1.364777e-03	k: 908	n:710000
SYNC   710000 perm   325 sec   (2184 perm/sec)   p_kst 1.278873e-03   p_cons 5.669775e-01   p_joint 3.563380e-03

Joint ci ratio: 7.724710e-02	ci left: 3.426185e-03	ci right 3.702833e-03	k: 2565	n:720000
Cons ci ratio: 4.037918e-03	ci left: 5.657573e-01	ci right 5.680477e-01	k: 408170	n:720000
KS ci ratio: 1.289456e-01	ci left: 1.199269e-03	ci right 1.365896e-03	k: 922	n:720000
SYNC   720000 perm   332 sec   (2167 perm/sec)   p_kst 1.280556e-03   p_cons 5.669028e-01   p_joint 3.562500e-03

Joint ci ratio: 7.697851e-02	ci left: 3.403432e-03	ci right 3.677244e-03	k: 2583	n:730000
Cons ci ratio: 4.010826e-03	ci left: 5.656843e-01	ci right 5.679590e-01	k: 413780	n:730000
KS ci ratio: 1.281841e-01	ci left: 1.197425e-03	ci right 1.362738e-03	k: 933	n:730000
SYNC   730000 perm   340 sec   (2148 perm/sec)   p_kst 1.278082e-03   p_cons 5.668219e-01   p_joint 3.538356e-03

Joint ci ratio: 7.161582e-02	ci left: 3.887983e-03	ci right 4.178082e-03	k: 2983	n:740000
Cons ci ratio: 3.982715e-03	ci left: 5.658052e-01	ci right 5.680645e-01	k: 419532	n:740000
KS ci ratio: 1.273686e-01	ci left: 1.196941e-03	ci right 1.361057e-03	k: 945	n:740000
SYNC   740000 perm   347 sec   (2130 perm/sec)   p_kst 1.277027e-03   p_cons 5.669351e-01   p_joint 4.031081e-03

Joint ci ratio: 6.740423e-02	ci left: 4.337975e-03	ci right 4.641872e-03	k: 3366	n:750000
Cons ci ratio: 3.956852e-03	ci left: 5.657163e-01	ci right 5.679605e-01	k: 425129	n:750000
KS ci ratio: 1.261080e-01	ci left: 1.205513e-03	ci right 1.369045e-03	k: 964	n:750000
SYNC   750000 perm   355 sec   (2113 perm/sec)   p_kst 1.285333e-03   p_cons 5.668387e-01   p_joint 4.488000e-03

Joint ci ratio: 6.686973e-02	ci left: 4.350757e-03	ci right 4.653039e-03	k: 3420	n:760000
Cons ci ratio: 3.930464e-03	ci left: 5.657574e-01	ci right 5.679868e-01	k: 430823	n:760000
KS ci ratio: 1.250113e-01	ci left: 1.211317e-03	ci right 1.374102e-03	k: 981	n:760000
SYNC   760000 perm   363 sec   (2096 perm/sec)   p_kst 1.290789e-03   p_cons 5.668724e-01   p_joint 4.500000e-03

Joint ci ratio: 6.663731e-02	ci left: 4.324900e-03	ci right 4.624301e-03	k: 3444	n:770000
Cons ci ratio: 3.904680e-03	ci left: 5.657872e-01	ci right 5.680020e-01	k: 436509	n:770000
KS ci ratio: 1.244427e-01	ci left: 1.206909e-03	ci right 1.368309e-03	k: 990	n:770000
SYNC   770000 perm   370 sec   (2080 perm/sec)   p_kst 1.285714e-03   p_cons 5.668948e-01   p_joint 4.472727e-03

Joint ci ratio: 6.646505e-02	ci left: 4.292143e-03	ci right 4.588479e-03	k: 3462	n:780000
Cons ci ratio: 3.879427e-03	ci left: 5.658123e-01	ci right 5.680128e-01	k: 442192	n:780000
KS ci ratio: 1.235113e-01	ci left: 1.210070e-03	ci right 1.370593e-03	k: 1005	n:780000
SYNC   780000 perm   378 sec   (2062 perm/sec)   p_kst 1.288462e-03   p_cons 5.669128e-01   p_joint 4.438462e-03

Joint ci ratio: 7.946439e-02	ci left: 2.948827e-03	ci right 3.194080e-03	k: 2425	n:790000
Cons ci ratio: 3.854867e-03	ci left: 5.658103e-01	ci right 5.679968e-01	k: 447854	n:790000
KS ci ratio: 1.229022e-01	ci left: 1.207021e-03	ci right 1.366292e-03	k: 1015	n:790000
SYNC   790000 perm   386 sec   (2046 perm/sec)   p_kst 1.284810e-03   p_cons 5.669038e-01   p_joint 3.069620e-03

Joint ci ratio: 7.880079e-02	ci left: 2.962203e-03	ci right 3.206417e-03	k: 2466	n:800000
Cons ci ratio: 3.830123e-03	ci left: 5.658909e-01	ci right 5.680637e-01	k: 453582	n:800000
KS ci ratio: 1.216507e-01	ci left: 1.217380e-03	ci right 1.376266e-03	k: 1036	n:800000
SYNC   800000 perm   394 sec   (2029 perm/sec)   p_kst 1.295000e-03   p_cons 5.669775e-01   p_joint 3.082500e-03

Joint ci ratio: 7.246176e-02	ci left: 3.469519e-03	ci right 3.731581e-03	k: 2915	n:810000
Cons ci ratio: 3.806223e-03	ci left: 5.659213e-01	ci right 5.680807e-01	k: 459271	n:810000
KS ci ratio: 1.210108e-01	ci left: 1.215519e-03	ci right 1.373267e-03	k: 1047	n:810000
SYNC   810000 perm   402 sec   (2014 perm/sec)   p_kst 1.292593e-03   p_cons 5.670012e-01   p_joint 3.598765e-03

Joint ci ratio: 7.198187e-02	ci left: 3.473911e-03	ci right 3.734494e-03	k: 2954	n:820000
Cons ci ratio: 3.782239e-03	ci left: 5.660194e-01	ci right 5.681655e-01	k: 465016	n:820000
KS ci ratio: 1.199844e-01	ci left: 1.221986e-03	ci right 1.379132e-03	k: 1065	n:820000
SYNC   820000 perm   410 sec   (1998 perm/sec)   p_kst 1.298780e-03   p_cons 5.670927e-01   p_joint 3.602439e-03

Joint ci ratio: 7.151139e-02	ci left: 3.478201e-03	ci right 3.737330e-03	k: 2993	n:830000
Cons ci ratio: 3.759643e-03	ci left: 5.659922e-01	ci right 5.681254e-01	k: 470659	n:830000
KS ci ratio: 1.193702e-01	ci left: 1.220119e-03	ci right 1.376166e-03	k: 1076	n:830000
SYNC   830000 perm   419 sec   (1982 perm/sec)   p_kst 1.296386e-03   p_cons 5.670590e-01   p_joint 3.606024e-03

Joint ci ratio: 7.121515e-02	ci left: 3.466024e-03	ci right 3.723132e-03	k: 3018	n:840000
Cons ci ratio: 3.736514e-03	ci left: 5.660884e-01	ci right 5.682087e-01	k: 476405	n:840000
KS ci ratio: 1.190947e-01	ci left: 1.211368e-03	ci right 1.365913e-03	k: 1081	n:840000
SYNC   840000 perm   427 sec   (1967 perm/sec)   p_kst 1.286905e-03   p_cons 5.671488e-01   p_joint 3.592857e-03

Joint ci ratio: 7.394563e-02	ci left: 3.173412e-03	ci right 3.418227e-03	k: 2800	n:850000
Cons ci ratio: 3.714536e-03	ci left: 5.660859e-01	ci right 5.681937e-01	k: 482069	n:850000
KS ci ratio: 1.182775e-01	ci left: 1.214240e-03	ci right 1.368014e-03	k: 1096	n:850000
SYNC   850000 perm   435 sec   (1952 perm/sec)   p_kst 1.289412e-03   p_cons 5.671400e-01   p_joint 3.294118e-03

Joint ci ratio: 7.405323e-02	ci left: 3.127379e-03	ci right 3.369009e-03	k: 2792	n:860000
Cons ci ratio: 3.692399e-03	ci left: 5.661555e-01	ci right 5.682510e-01	k: 487795	n:860000
KS ci ratio: 1.172659e-01	ci left: 1.221564e-03	ci right 1.374850e-03	k: 1115	n:860000
SYNC   860000 perm   444 sec   (1937 perm/sec)   p_kst 1.296512e-03   p_cons 5.672035e-01   p_joint 3.246512e-03

Joint ci ratio: 7.405461e-02	ci left: 3.091430e-03	ci right 3.330287e-03	k: 2792	n:870000
Cons ci ratio: 3.671272e-03	ci left: 5.661408e-01	ci right 5.682242e-01	k: 493449	n:870000
KS ci ratio: 1.167962e-01	ci left: 1.217564e-03	ci right 1.369695e-03	k: 1124	n:870000
SYNC   870000 perm   452 sec   (1924 perm/sec)   p_kst 1.291954e-03   p_cons 5.671828e-01   p_joint 3.209195e-03

Joint ci ratio: 6.938828e-02	ci left: 3.488218e-03	ci right 3.740067e-03	k: 3179	n:880000
Cons ci ratio: 3.650065e-03	ci left: 5.661856e-01	ci right 5.682571e-01	k: 499155	n:880000
KS ci ratio: 1.162294e-01	ci left: 1.215864e-03	ci right 1.366995e-03	k: 1135	n:880000
SYNC   880000 perm   461 sec   (1910 perm/sec)   p_kst 1.289773e-03   p_cons 5.672216e-01   p_joint 3.612500e-03

Joint ci ratio: 6.909593e-02	ci left: 3.478836e-03	ci right 3.728907e-03	k: 3206	n:890000
Cons ci ratio: 3.630217e-03	ci left: 5.660946e-01	ci right 5.681544e-01	k: 504741	n:890000
KS ci ratio: 1.154193e-01	ci left: 1.219660e-03	ci right 1.370133e-03	k: 1151	n:890000
SYNC   890000 perm   469 sec   (1897 perm/sec)   p_kst 1.293258e-03   p_cons 5.671247e-01   p_joint 3.602247e-03

Joint ci ratio: 6.881792e-02	ci left: 3.468572e-03	ci right 3.716862e-03	k: 3232	n:900000
Cons ci ratio: 3.610289e-03	ci left: 5.660600e-01	ci right 5.681084e-01	k: 510376	n:900000
KS ci ratio: 1.150209e-01	ci left: 1.214740e-03	ci right 1.364055e-03	k: 1159	n:900000
SYNC   900000 perm   478 sec   (1883 perm/sec)   p_kst 1.287778e-03   p_cons 5.670844e-01   p_joint 3.591111e-03

Joint ci ratio: 6.849052e-02	ci left: 3.463937e-03	ci right 3.710668e-03	k: 3263	n:910000
Cons ci ratio: 3.589488e-03	ci left: 5.661901e-01	ci right 5.682271e-01	k: 516160	n:910000
KS ci ratio: 1.143330e-01	ci left: 1.216335e-03	ci right 1.364891e-03	k: 1173	n:910000
SYNC   910000 perm   487 sec   (1869 perm/sec)   p_kst 1.289011e-03   p_cons 5.672088e-01   p_joint 3.585714e-03

Joint ci ratio: 6.806418e-02	ci left: 3.470090e-03	ci right 3.715660e-03	k: 3304	n:920000
Cons ci ratio: 3.570157e-03	ci left: 5.661640e-01	ci right 5.681899e-01	k: 521803	n:920000
KS ci ratio: 1.136572e-01	ci left: 1.217897e-03	ci right 1.365706e-03	k: 1187	n:920000
SYNC   920000 perm   496 sec   (1855 perm/sec)   p_kst 1.290217e-03   p_cons 5.671772e-01   p_joint 3.591304e-03

Joint ci ratio: 6.784951e-02	ci left: 3.454973e-03	ci right 3.698672e-03	k: 3325	n:930000
Cons ci ratio: 3.551142e-03	ci left: 5.661374e-01	ci right 5.681525e-01	k: 527445	n:930000
KS ci ratio: 1.132768e-01	ci left: 1.213160e-03	ci right 1.359867e-03	k: 1195	n:930000
SYNC   930000 perm   505 sec   (1842 perm/sec)   p_kst 1.284946e-03   p_cons 5.671452e-01   p_joint 3.575269e-03

Joint ci ratio: 6.745507e-02	ci left: 3.459006e-03	ci right 3.701516e-03	k: 3364	n:940000
Cons ci ratio: 3.532045e-03	ci left: 5.661647e-01	ci right 5.681690e-01	k: 533137	n:940000
KS ci ratio: 1.125264e-01	ci left: 1.216794e-03	ci right 1.362902e-03	k: 1211	n:940000
SYNC   940000 perm   514 sec   (1830 perm/sec)   p_kst 1.288298e-03   p_cons 5.671670e-01   p_joint 3.578723e-03

Joint ci ratio: 6.702791e-02	ci left: 3.467098e-03	ci right 3.708576e-03	k: 3407	n:950000
Cons ci ratio: 3.513517e-03	ci left: 5.661545e-01	ci right 5.681482e-01	k: 538794	n:950000
KS ci ratio: 1.119277e-01	ci left: 1.217286e-03	ci right 1.362624e-03	k: 1224	n:950000
SYNC   950000 perm   523 sec   (1817 perm/sec)   p_kst 1.288421e-03   p_cons 5.671516e-01   p_joint 3.586316e-03

Joint ci ratio: 6.787380e-02	ci left: 3.344951e-03	ci right 3.580977e-03	k: 3323	n:960000
Cons ci ratio: 3.495084e-03	ci left: 5.661717e-01	ci right 5.681550e-01	k: 544477	n:960000
KS ci ratio: 1.114286e-01	ci left: 1.215744e-03	ci right 1.360208e-03	k: 1235	n:960000
SYNC   960000 perm   583 sec   (1647 perm/sec)   p_kst 1.286458e-03   p_cons 5.671635e-01   p_joint 3.461458e-03

Joint ci ratio: 6.110553e-02	ci left: 4.095619e-03	ci right 4.354778e-03	k: 4097	n:970000
Cons ci ratio: 3.477056e-03	ci left: 5.661720e-01	ci right 5.681451e-01	k: 550144	n:970000
KS ci ratio: 1.107142e-01	ci left: 1.219248e-03	ci right 1.363138e-03	k: 1251	n:970000
SYNC   970000 perm   592 sec   (1638 perm/sec)   p_kst 1.289691e-03   p_cons 5.671588e-01   p_joint 4.223711e-03

Joint ci ratio: 6.230129e-02	ci left: 3.898091e-03	ci right 4.149752e-03	k: 3942	n:980000
Cons ci ratio: 3.459116e-03	ci left: 5.661989e-01	ci right 5.681619e-01	k: 555837	n:980000
KS ci ratio: 1.103186e-01	ci left: 1.215736e-03	ci right 1.358666e-03	k: 1260	n:980000
SYNC   980000 perm   602 sec   (1629 perm/sec)   p_kst 1.285714e-03   p_cons 5.671806e-01   p_joint 4.022449e-03

Joint ci ratio: 6.187080e-02	ci left: 3.913410e-03	ci right 4.164253e-03	k: 3997	n:990000
Cons ci ratio: 3.442018e-03	ci left: 5.661445e-01	ci right 5.680975e-01	k: 561450	n:990000
KS ci ratio: 1.098839e-01	ci left: 1.213279e-03	ci right 1.355322e-03	k: 1270	n:990000
SYNC   990000 perm   611 sec   (1620 perm/sec)   p_kst 1.282828e-03   p_cons 5.671212e-01   p_joint 4.037374e-03

Joint ci ratio: 6.154831e-02	ci left: 3.915628e-03	ci right 4.165258e-03	k: 4039	n:1000000
Cons ci ratio: 3.425136e-03	ci left: 5.660962e-01	ci right 5.680394e-01	k: 567068	n:1000000
KS ci ratio: 1.095829e-01	ci left: 1.207953e-03	ci right 1.348961e-03	k: 1277	n:1000000
SYNC   1000000 perm   621 sec   (1611 perm/sec)   p_kst 1.277000e-03   p_cons 5.670680e-01   p_joint 4.039000e-03

Joint ci ratio: 6.483827e-02	ci left: 3.488998e-03	ci right 3.723764e-03	k: 3641	n:1010000
Cons ci ratio: 3.408871e-03	ci left: 5.659954e-01	ci right 5.679290e-01	k: 572632	n:1010000
KS ci ratio: 1.091568e-01	ci left: 1.205624e-03	ci right 1.345776e-03	k: 1287	n:1010000
SYNC   1010000 perm   630 sec   (1603 perm/sec)   p_kst 1.274257e-03   p_cons 5.669624e-01   p_joint 3.604950e-03

Joint ci ratio: 6.846175e-02	ci left: 3.094209e-03	ci right 3.314509e-03	k: 3267	n:1020000
Cons ci ratio: 3.391629e-03	ci left: 5.660711e-01	ci right 5.679952e-01	k: 578374	n:1020000
KS ci ratio: 1.083602e-01	ci left: 1.211925e-03	ci right 1.351716e-03	k: 1306	n:1020000
SYNC   1020000 perm   640 sec   (1594 perm/sec)   p_kst 1.280392e-03   p_cons 5.670333e-01   p_joint 3.202941e-03

Joint ci ratio: 6.822240e-02	ci left: 3.086117e-03	ci right 3.305041e-03	k: 3290	n:1030000
Cons ci ratio: 3.374740e-03	ci left: 5.661318e-01	ci right 5.680465e-01	k: 584102	n:1030000
KS ci ratio: 1.078252e-01	ci left: 1.212439e-03	ci right 1.351555e-03	k: 1319	n:1030000
SYNC   1030000 perm   649 sec   (1586 perm/sec)   p_kst 1.280583e-03   p_cons 5.670893e-01   p_joint 3.194175e-03

Joint ci ratio: 6.788287e-02	ci left: 3.087633e-03	ci right 3.305533e-03	k: 3323	n:1040000
Cons ci ratio: 3.357884e-03	ci left: 5.662231e-01	ci right 5.681285e-01	k: 589863	n:1040000
KS ci ratio: 1.074193e-01	ci left: 1.210137e-03	ci right 1.348434e-03	k: 1329	n:1040000
SYNC   1040000 perm   659 sec   (1577 perm/sec)   p_kst 1.277885e-03   p_cons 5.671760e-01   p_joint 3.195192e-03

Joint ci ratio: 6.860190e-02	ci left: 2.993629e-03	ci right 3.207222e-03	k: 3254	n:1050000
Cons ci ratio: 3.341802e-03	ci left: 5.662355e-01	ci right 5.681318e-01	k: 595543	n:1050000
KS ci ratio: 1.069380e-01	ci left: 1.209734e-03	ci right 1.347326e-03	k: 1341	n:1050000
SYNC   1050000 perm   669 sec   (1570 perm/sec)   p_kst 1.277143e-03   p_cons 5.671838e-01   p_joint 3.099048e-03

Joint ci ratio: 6.826712e-02	ci left: 2.995060e-03	ci right 3.207670e-03	k: 3286	n:1060000
Cons ci ratio: 3.325905e-03	ci left: 5.662543e-01	ci right 5.681416e-01	k: 601230	n:1060000
KS ci ratio: 1.065025e-01	ci left: 1.208422e-03	ci right 1.345270e-03	k: 1352	n:1060000
SYNC   1060000 perm   679 sec   (1561 perm/sec)   p_kst 1.275472e-03   p_cons 5.671981e-01   p_joint 3.100000e-03

Joint ci ratio: 7.036011e-02	ci left: 2.790728e-03	ci right 2.995155e-03	k: 3094	n:1070000
Cons ci ratio: 3.310213e-03	ci left: 5.662755e-01	ci right 5.681540e-01	k: 606920	n:1070000
KS ci ratio: 1.059944e-01	ci left: 1.208955e-03	ci right 1.345170e-03	k: 1365	n:1070000
SYNC   1070000 perm   689 sec   (1553 perm/sec)   p_kst 1.275701e-03   p_cons 5.672150e-01   p_joint 2.891589e-03

Joint ci ratio: 7.006652e-02	ci left: 2.788539e-03	ci right 2.991919e-03	k: 3120	n:1080000
Cons ci ratio: 3.294841e-03	ci left: 5.662816e-01	ci right 5.681514e-01	k: 612594	n:1080000
KS ci ratio: 1.056087e-01	ci left: 1.206775e-03	ci right 1.342219e-03	k: 1375	n:1080000
SYNC   1080000 perm   699 sec   (1545 perm/sec)   p_kst 1.273148e-03   p_cons 5.672167e-01   p_joint 2.888889e-03

Joint ci ratio: 6.966566e-02	ci left: 2.795407e-03	ci right 2.998074e-03	k: 3156	n:1090000
Cons ci ratio: 3.279896e-03	ci left: 5.662555e-01	ci right 5.681167e-01	k: 618233	n:1090000
KS ci ratio: 1.053033e-01	ci left: 1.202849e-03	ci right 1.337438e-03	k: 1383	n:1090000
SYNC   1090000 perm   710 sec   (1536 perm/sec)   p_kst 1.268807e-03   p_cons 5.671862e-01   p_joint 2.895413e-03

Joint ci ratio: 6.034246e-02	ci left: 3.706469e-03	ci right 3.937973e-03	k: 4203	n:1100000
Cons ci ratio: 3.264529e-03	ci left: 5.663235e-01	ci right 5.681762e-01	k: 623975	n:1100000
KS ci ratio: 1.046997e-01	ci left: 1.206078e-03	ci right 1.340207e-03	k: 1399	n:1100000
SYNC   1100000 perm   720 sec   (1529 perm/sec)   p_kst 1.271818e-03   p_cons 5.672500e-01   p_joint 3.820909e-03

Joint ci ratio: 6.007869e-02	ci left: 3.705909e-03	ci right 3.936331e-03	k: 4240	n:1110000
Cons ci ratio: 3.249764e-03	ci left: 5.663317e-01	ci right 5.681760e-01	k: 629652	n:1110000
KS ci ratio: 1.041063e-01	ci left: 1.209251e-03	ci right 1.342923e-03	k: 1415	n:1110000
SYNC   1110000 perm   730 sec   (1520 perm/sec)   p_kst 1.274775e-03   p_cons 5.672541e-01   p_joint 3.819820e-03

Joint ci ratio: 5.983942e-02	ci left: 3.702723e-03	ci right 3.931998e-03	k: 4274	n:1120000
Cons ci ratio: 3.235068e-03	ci left: 5.663595e-01	ci right 5.681955e-01	k: 635351	n:1120000
KS ci ratio: 1.038137e-01	ci left: 1.205411e-03	ci right 1.338261e-03	k: 1423	n:1120000
SYNC   1120000 perm   741 sec   (1512 perm/sec)   p_kst 1.270536e-03   p_cons 5.672777e-01   p_joint 3.816071e-03

Joint ci ratio: 5.990377e-02	ci left: 3.662108e-03	ci right 3.889120e-03	k: 4265	n:1130000
Cons ci ratio: 3.220703e-03	ci left: 5.663664e-01	ci right 5.681943e-01	k: 641027	n:1130000
KS ci ratio: 1.032352e-01	ci left: 1.208536e-03	ci right 1.340944e-03	k: 1439	n:1130000
SYNC   1130000 perm   751 sec   (1505 perm/sec)   p_kst 1.273451e-03   p_cons 5.672805e-01   p_joint 3.774336e-03

Joint ci ratio: 5.963873e-02	ci left: 3.662819e-03	ci right 3.888837e-03	k: 4303	n:1140000
Cons ci ratio: 3.206533e-03	ci left: 5.663724e-01	ci right 5.681922e-01	k: 646702	n:1140000
KS ci ratio: 1.025253e-01	ci left: 1.215028e-03	ci right 1.347176e-03	k: 1459	n:1140000
SYNC   1140000 perm   762 sec   (1497 perm/sec)   p_kst 1.279825e-03   p_cons 5.672825e-01   p_joint 3.774561e-03

Joint ci ratio: 6.294773e-02	ci left: 3.255054e-03	ci right 3.467460e-03	k: 3864	n:1150000
Cons ci ratio: 3.193086e-03	ci left: 5.662956e-01	ci right 5.681076e-01	k: 652282	n:1150000
KS ci ratio: 1.022109e-01	ci left: 1.212088e-03	ci right 1.343488e-03	k: 1468	n:1150000
SYNC   1150000 perm   772 sec   (1489 perm/sec)   p_kst 1.276522e-03   p_cons 5.672017e-01   p_joint 3.360000e-03

Joint ci ratio: 6.270495e-02	ci left: 3.252448e-03	ci right 3.463836e-03	k: 3894	n:1160000
Cons ci ratio: 3.179399e-03	ci left: 5.662831e-01	ci right 5.680872e-01	k: 657935	n:1160000
KS ci ratio: 1.018305e-01	ci left: 1.210879e-03	ci right 1.341631e-03	k: 1479	n:1160000
SYNC   1160000 perm   783 sec   (1481 perm/sec)   p_kst 1.275000e-03   p_cons 5.671853e-01   p_joint 3.356897e-03

Joint ci ratio: 6.308068e-02	ci left: 3.185948e-03	ci right 3.394300e-03	k: 3848	n:1170000
Cons ci ratio: 3.165876e-03	ci left: 5.662726e-01	ci right 5.680690e-01	k: 663590	n:1170000
KS ci ratio: 1.013182e-01	ci left: 1.213025e-03	ci right 1.343310e-03	k: 1494	n:1170000
SYNC   1170000 perm   794 sec   (1474 perm/sec)   p_kst 1.276923e-03   p_cons 5.671709e-01   p_joint 3.288889e-03

Joint ci ratio: 6.283636e-02	ci left: 3.183972e-03	ci right 3.391359e-03	k: 3878	n:1180000
Cons ci ratio: 3.152720e-03	ci left: 5.662317e-01	ci right 5.680205e-01	k: 669209	n:1180000
KS ci ratio: 1.010148e-01	ci left: 1.210179e-03	ci right 1.339746e-03	k: 1503	n:1180000
SYNC   1180000 perm   805 sec   (1466 perm/sec)   p_kst 1.273729e-03   p_cons 5.671263e-01   p_joint 3.286441e-03

Joint ci ratio: 6.253068e-02	ci left: 3.188649e-03	ci right 3.395293e-03	k: 3916	n:1190000
Cons ci ratio: 3.139135e-03	ci left: 5.662840e-01	ci right 5.680652e-01	k: 674938	n:1190000
KS ci ratio: 1.002507e-01	ci left: 1.218851e-03	ci right 1.348302e-03	k: 1526	n:1190000
SYNC   1190000 perm   816 sec   (1458 perm/sec)   p_kst 1.282353e-03   p_cons 5.671748e-01   p_joint 3.290756e-03

Joint ci ratio: 6.228475e-02	ci left: 3.187507e-03	ci right 3.393236e-03	k: 3947	n:1200000
Cons ci ratio: 3.125963e-03	ci left: 5.662979e-01	ci right 5.680717e-01	k: 680622	n:1200000
KS ci ratio: 9.979425e-02	ci left: 1.220069e-03	ci right 1.349024e-03	k: 1540	n:1200000
SYNC   1200000 perm   827 sec   (1451 perm/sec)   p_kst 1.283333e-03   p_cons 5.671850e-01   p_joint 3.289167e-03

Outputting figure to mutsig2_images.part000000000170/SYNC.4_1531_1200000_0.0012833_0.56719_0.0032892.png
                gene_name: SYNC
               theta_stop: 0.100 
                    nperm: 1200000 
                     p_ks: 0.0013 
        ci_ks_bounds_left: 0.0012 
       ci_ks_bounds_right: 0.0013 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.0033 
     ci_joint_bounds_left: 0.0032 
    ci_joint_bounds_right: 0.0034 

Current progress: 50 percent done.
SYT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.795200e-02	ci left: 5.062518e-01	ci right 5.259388e-01	k: 5161	n:10000
Cons ci ratio: 1.045991e-02	ci left: 9.285426e-01	ci right 9.384031e-01	k: 9336	n:10000
KS ci ratio: 6.409772e-02	ci left: 2.633947e-01	ci right 2.809382e-01	k: 2721	n:10000
SYT2   10000 perm   2 sec   (6080 perm/sec)   p_kst 2.721000e-01   p_cons 9.336000e-01   p_joint 5.161000e-01

Outputting figure to mutsig2_images.part000000000170/SYT2.4_1292_10000_0.2721_0.9336_0.5161.png
                gene_name: SYT2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 52 percent done.
SYT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.792921e-02	ci left: 5.065519e-01	ci right 5.262386e-01	k: 5164	n:10000
Cons ci ratio: 7.539331e-02	ci left: 2.047140e-01	ci right 2.208536e-01	k: 2127	n:10000
KS ci ratio: 3.355274e-02	ci left: 5.673461e-01	ci right 5.868090e-01	k: 5771	n:10000
SYT5   10000 perm   2 sec   (5752 perm/sec)   p_kst 5.771000e-01   p_cons 2.127000e-01   p_joint 5.164000e-01

Outputting figure to mutsig2_images.part000000000170/SYT5.4_1193_10000_0.5771_0.2127_0.5164.png
                gene_name: SYT5
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 53 percent done.
SYTL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.279465e-02	ci left: 7.386615e-01	ci right 7.557942e-01	k: 7473	n:10000
Cons ci ratio: 1.081572e-01	ci left: 1.097862e-01	ci right 1.224384e-01	k: 1160	n:10000
KS ci ratio: 1.326553e-02	ci left: 8.911840e-01	ci right 9.031835e-01	k: 8973	n:10000
SYTL3   10000 perm   2 sec   (4925 perm/sec)   p_kst 8.973000e-01   p_cons 1.160000e-01   p_joint 7.473000e-01

Joint ci ratio: 4.114193e-02	ci left: 3.057308e-01	ci right 3.186238e-01	k: 6243	n:20000
Cons ci ratio: 7.798896e-02	ci left: 1.077592e-01	ci right 1.165539e-01	k: 2242	n:20000
KS ci ratio: 9.383912e-03	ci left: 8.929081e-01	ci right 9.013760e-01	k: 17944	n:20000
SYTL3   20000 perm   5 sec   (4183 perm/sec)   p_kst 8.972000e-01   p_cons 1.121000e-01   p_joint 3.121500e-01

Outputting figure to mutsig2_images.part000000000170/SYTL3.4_1681_20000_0.8972_0.1121_0.31215.png
                gene_name: SYTL3
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 55 percent done.
TAAR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.093325e-01	ci left: 1.076389e-01	ci right 1.201870e-01	k: 1138	n:10000
Cons ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
KS ci ratio: 1.152409e-01	ci left: 9.769325e-02	ci right 1.097387e-01	k: 1036	n:10000
TAAR1   10000 perm   2 sec   (5990 perm/sec)   p_kst 1.036000e-01   p_cons 2.130000e-02   p_joint 1.138000e-01

Joint ci ratio: 1.351748e-01	ci left: 3.761647e-02	ci right 4.311819e-02	k: 806	n:20000
Cons ci ratio: 1.935323e-01	ci left: 1.815237e-02	ci right 2.208889e-02	k: 401	n:20000
KS ci ratio: 7.918689e-02	ci left: 1.048113e-01	ci right 1.135027e-01	k: 2182	n:20000
TAAR1   20000 perm   4 sec   (5409 perm/sec)   p_kst 1.091000e-01   p_cons 2.005000e-02   p_joint 4.030000e-02

Joint ci ratio: 1.496256e-01	ci left: 2.069096e-02	ci right 2.406909e-02	k: 670	n:30000
Cons ci ratio: 1.600634e-01	ci left: 1.802935e-02	ci right 2.119799e-02	k: 587	n:30000
KS ci ratio: 6.472837e-02	ci left: 1.053963e-01	ci right 1.124797e-01	k: 3267	n:30000
TAAR1   30000 perm   6 sec   (5165 perm/sec)   p_kst 1.089000e-01   p_cons 1.956667e-02   p_joint 2.233333e-02

Joint ci ratio: 1.324608e-01	ci left: 2.000416e-02	ci right 2.286591e-02	k: 856	n:40000
Cons ci ratio: 1.388908e-01	ci left: 1.816740e-02	ci right 2.090298e-02	k: 780	n:40000
KS ci ratio: 5.606622e-02	ci left: 1.058385e-01	ci right 1.119684e-01	k: 4355	n:40000
TAAR1   40000 perm   8 sec   (4998 perm/sec)   p_kst 1.088750e-01   p_cons 1.950000e-02   p_joint 2.140000e-02

Joint ci ratio: 1.362716e-01	ci left: 1.516958e-02	ci right 1.740709e-02	k: 813	n:50000
Cons ci ratio: 1.252293e-01	ci left: 1.801515e-02	ci right 2.044113e-02	k: 960	n:50000
KS ci ratio: 5.000821e-02	ci left: 1.066965e-01	ci right 1.121889e-01	k: 5471	n:50000
TAAR1   50000 perm   10 sec   (4884 perm/sec)   p_kst 1.094200e-01   p_cons 1.920000e-02   p_joint 1.626000e-02

Joint ci ratio: 1.107116e-01	ci left: 1.933242e-02	ci right 2.161429e-02	k: 1227	n:60000
Cons ci ratio: 1.143791e-01	ci left: 1.810074e-02	ci right 2.031278e-02	k: 1151	n:60000
KS ci ratio: 4.549333e-02	ci left: 1.076060e-01	ci right 1.126318e-01	k: 6606	n:60000
TAAR1   60000 perm   13 sec   (4779 perm/sec)   p_kst 1.101000e-01   p_cons 1.918333e-02   p_joint 2.045000e-02

Joint ci ratio: 9.839400e-02	ci left: 2.107943e-02	ci right 2.327471e-02	k: 1551	n:70000
Cons ci ratio: 1.060556e-01	ci left: 1.812668e-02	ci right 2.017060e-02	k: 1339	n:70000
KS ci ratio: 4.212840e-02	ci left: 1.077478e-01	ci right 1.123989e-01	k: 7704	n:70000
TAAR1   70000 perm   15 sec   (4682 perm/sec)   p_kst 1.100571e-01   p_cons 1.912857e-02   p_joint 2.215714e-02

Joint ci ratio: 9.305606e-02	ci left: 2.068926e-02	ci right 2.272063e-02	k: 1735	n:80000
Cons ci ratio: 9.928630e-02	ci left: 1.816273e-02	ci right 2.007237e-02	k: 1528	n:80000
KS ci ratio: 3.940682e-02	ci left: 1.079017e-01	ci right 1.122516e-01	k: 8805	n:80000
TAAR1   80000 perm   17 sec   (4581 perm/sec)   p_kst 1.100625e-01   p_cons 1.910000e-02   p_joint 2.168750e-02

Outputting figure to mutsig2_images.part000000000170/TAAR1.4_1024_80000_0.11006_0.0191_0.021687.png
                gene_name: TAAR1
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 56 percent done.
TAB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.383558e-02	ci left: 1.718257e-01	ci right 1.869615e-01	k: 1793	n:10000
Cons ci ratio: 8.372187e-02	ci left: 1.722191e-01	ci right 1.873680e-01	k: 1797	n:10000
KS ci ratio: 8.570440e-02	ci left: 1.655342e-01	ci right 1.804568e-01	k: 1729	n:10000
TAB3   10000 perm   2 sec   (5379 perm/sec)   p_kst 1.729000e-01   p_cons 1.797000e-01   p_joint 1.793000e-01

Outputting figure to mutsig2_images.part000000000170/TAB3.4_2167_10000_0.1729_0.1797_0.1793.png
                gene_name: TAB3
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.19 

Current progress: 58 percent done.
SYCE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.061366e-02	ci left: 2.858743e-01	ci right 3.038454e-01	k: 2948	n:10000
Cons ci ratio: 3.136044e-02	ci left: 6.000581e-01	ci right 6.192779e-01	k: 6097	n:10000
KS ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
SYCE1   10000 perm   2 sec   (6239 perm/sec)   p_kst 1.050000e-01   p_cons 6.097000e-01   p_joint 2.948000e-01

Joint ci ratio: 4.878366e-02	ci left: 2.380602e-01	ci right 2.500143e-01	k: 4880	n:20000
Cons ci ratio: 2.218099e-02	ci left: 6.027985e-01	ci right 6.163697e-01	k: 12192	n:20000
KS ci ratio: 8.049680e-02	ci left: 1.017171e-01	ci right 1.102979e-01	k: 2119	n:20000
SYCE1   20000 perm   4 sec   (5631 perm/sec)   p_kst 1.059500e-01   p_cons 6.096000e-01   p_joint 2.440000e-01

Outputting figure to mutsig2_images.part000000000170/SYCE1.3_1151_20000_0.10595_0.6096_0.244.png
                gene_name: SYCE1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 60 percent done.
SYDE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.235785e-02	ci left: 3.496895e-01	ci right 3.685926e-01	k: 3591	n:10000
Cons ci ratio: 4.252495e-02	ci left: 4.494958e-01	ci right 4.691280e-01	k: 4593	n:10000
KS ci ratio: 7.707555e-02	ci left: 1.975185e-01	ci right 2.134534e-01	k: 2054	n:10000
SYDE1   10000 perm   2 sec   (6293 perm/sec)   p_kst 2.054000e-01   p_cons 4.593000e-01   p_joint 3.591000e-01

Outputting figure to mutsig2_images.part000000000170/SYDE1.3_2240_10000_0.2054_0.4593_0.3591.png
                gene_name: SYDE1
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 61 percent done.
SYK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.275514e-02	ci left: 5.790813e-01	ci right 5.984670e-01	k: 5888	n:10000
KS ci ratio: 1.864654e-02	ci left: 8.077560e-01	ci right 8.230598e-01	k: 8155	n:10000
SYK   10000 perm   2 sec   (5897 perm/sec)   p_kst 8.155000e-01   p_cons 5.888000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/SYK.3_1960_10000_0.8155_0.5888_1.png
                gene_name: SYK
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
SYN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.548872e-02	ci left: 8.581460e-01	ci right 8.716407e-01	k: 8650	n:10000
Cons ci ratio: 4.058238e-02	ci left: 4.727624e-01	ci right 4.924478e-01	k: 4826	n:10000
KS ci ratio: 2.365186e-02	ci left: 7.243132e-01	ci right 7.417508e-01	k: 7331	n:10000
SYN2   10000 perm   2 sec   (5704 perm/sec)   p_kst 7.331000e-01   p_cons 4.826000e-01   p_joint 8.650000e-01

Outputting figure to mutsig2_images.part000000000170/SYN2.3_1870_10000_0.7331_0.4826_0.865.png
                gene_name: SYN2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 65 percent done.
SYNPO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.391724e-02	ci left: 2.113215e-01	ci right 2.276422e-01	k: 2194	n:10000
Cons ci ratio: 2.414772e-02	ci left: 7.160328e-01	ci right 7.336360e-01	k: 7249	n:10000
KS ci ratio: 1.011368e-01	ci left: 1.239561e-01	ci right 1.372599e-01	k: 1305	n:10000
SYNPO   10000 perm   2 sec   (5258 perm/sec)   p_kst 1.305000e-01   p_cons 7.249000e-01   p_joint 2.194000e-01

Joint ci ratio: 4.779929e-02	ci left: 2.455976e-01	ci right 2.576747e-01	k: 5032	n:20000
Cons ci ratio: 1.669901e-02	ci left: 7.275153e-01	ci right 7.398167e-01	k: 14674	n:20000
KS ci ratio: 7.197603e-02	ci left: 1.244821e-01	ci right 1.338260e-01	k: 2582	n:20000
SYNPO   20000 perm   5 sec   (4232 perm/sec)   p_kst 1.291000e-01   p_cons 7.337000e-01   p_joint 2.516000e-01

Outputting figure to mutsig2_images.part000000000170/SYNPO.3_3486_20000_0.1291_0.7337_0.2516.png
                gene_name: SYNPO
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 66 percent done.
SYPL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.618433e-02	ci left: 8.473340e-01	ci right 8.612589e-01	k: 8544	n:10000
Cons ci ratio: 4.080238e-02	ci left: 4.700652e-01	ci right 4.897466e-01	k: 4799	n:10000
KS ci ratio: 2.593006e-02	ci left: 6.864752e-01	ci right 7.046108e-01	k: 6956	n:10000
SYPL2   10000 perm   2 sec   (5387 perm/sec)   p_kst 6.956000e-01   p_cons 4.799000e-01   p_joint 8.544000e-01

Outputting figure to mutsig2_images.part000000000170/SYPL2.3_843_10000_0.6956_0.4799_0.8544.png
                gene_name: SYPL2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 68 percent done.
SYT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.854737e-02	ci left: 8.093811e-01	ci right 8.246338e-01	k: 8171	n:10000
KS ci ratio: 2.751516e-02	ci left: 6.605848e-01	ci right 6.791161e-01	k: 6699	n:10000
SYT3   10000 perm   2 sec   (5225 perm/sec)   p_kst 6.699000e-01   p_cons 8.171000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/SYT3.3_1805_10000_0.6699_0.8171_1.png
                gene_name: SYT3
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
SYT7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.160472e-02	ci left: 5.963432e-01	ci right 6.155950e-01	k: 6060	n:10000
Cons ci ratio: 6.385595e-02	ci left: 2.648793e-01	ci right 2.824527e-01	k: 2736	n:10000
KS ci ratio: 4.917035e-02	ci left: 3.789306e-01	ci right 3.981344e-01	k: 3885	n:10000
SYT7   10000 perm   2 sec   (6340 perm/sec)   p_kst 3.885000e-01   p_cons 2.736000e-01   p_joint 6.060000e-01

Outputting figure to mutsig2_images.part000000000170/SYT7.3_1248_10000_0.3885_0.2736_0.606.png
                gene_name: SYT7
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 71 percent done.
SYTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.882622e-02	ci left: 2.983636e-01	ci right 3.165487e-01	k: 3074	n:10000
Cons ci ratio: 4.721990e-02	ci left: 3.982459e-01	ci right 4.176078e-01	k: 4079	n:10000
KS ci ratio: 6.726746e-02	ci left: 2.448978e-01	ci right 2.620461e-01	k: 2534	n:10000
SYTL1   10000 perm   2 sec   (6484 perm/sec)   p_kst 2.534000e-01   p_cons 4.079000e-01   p_joint 3.074000e-01

Outputting figure to mutsig2_images.part000000000170/SYTL1.3_1709_10000_0.2534_0.4079_0.3074.png
                gene_name: SYTL1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 73 percent done.
SYVN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.814299e-02	ci left: 8.159855e-01	ci right 8.310256e-01	k: 8236	n:10000
Cons ci ratio: 4.747495e-02	ci left: 3.956563e-01	ci right 4.149989e-01	k: 4053	n:10000
KS ci ratio: 2.164184e-02	ci left: 7.579801e-01	ci right 7.746645e-01	k: 7664	n:10000
SYVN1   10000 perm   3 sec   (3607 perm/sec)   p_kst 7.664000e-01   p_cons 4.053000e-01   p_joint 8.236000e-01

Outputting figure to mutsig2_images.part000000000170/SYVN1.3_1914_10000_0.7664_0.4053_0.8236.png
                gene_name: SYVN1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 74 percent done.
T
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.956429e-02	ci left: 1.274785e-01	ci right 1.409354e-01	k: 1341	n:10000
Cons ci ratio: 2.214905e-02	ci left: 7.494812e-01	ci right 7.663683e-01	k: 7580	n:10000
KS ci ratio: 1.917816e-01	ci left: 3.624378e-02	ci right 4.402702e-02	k: 400	n:10000
T   10000 perm   2 sec   (6323 perm/sec)   p_kst 4.000000e-02   p_cons 7.580000e-01   p_joint 1.341000e-01

Joint ci ratio: 5.279992e-02	ci left: 2.103134e-01	ci right 2.217693e-01	k: 4320	n:20000
Cons ci ratio: 1.572157e-02	ci left: 7.505906e-01	ci right 7.625348e-01	k: 15132	n:20000
KS ci ratio: 1.319696e-01	ci left: 3.945544e-02	ci right 4.507862e-02	k: 844	n:20000
T   20000 perm   4 sec   (5638 perm/sec)   p_kst 4.220000e-02   p_cons 7.566000e-01   p_joint 2.160000e-01

Joint ci ratio: 8.527588e-02	ci left: 6.298724e-02	ci right 6.863053e-02	k: 1973	n:30000
Cons ci ratio: 1.249261e-02	ci left: 7.616368e-01	ci right 7.712449e-01	k: 22994	n:30000
KS ci ratio: 1.050768e-01	ci left: 4.199920e-02	ci right 4.668956e-02	k: 1329	n:30000
T   30000 perm   6 sec   (5382 perm/sec)   p_kst 4.430000e-02   p_cons 7.664667e-01   p_joint 6.576667e-02

Joint ci ratio: 6.960017e-02	ci left: 7.091201e-02	ci right 7.605011e-02	k: 2938	n:40000
Cons ci ratio: 1.078542e-02	ci left: 7.634039e-01	ci right 7.717072e-01	k: 30703	n:40000
KS ci ratio: 9.196235e-02	ci left: 4.144839e-02	ci right 4.546823e-02	k: 1737	n:40000
T   40000 perm   8 sec   (5221 perm/sec)   p_kst 4.342500e-02   p_cons 7.675750e-01   p_joint 7.345000e-02

Outputting figure to mutsig2_images.part000000000170/T.3_1340_40000_0.043425_0.76758_0.07345.png
                gene_name: T
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.076 

Current progress: 76 percent done.
TAAR9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.309951e-02	ci left: 8.935428e-01	ci right 9.054233e-01	k: 8996	n:10000
KS ci ratio: 2.101880e-02	ci left: 7.684076e-01	ci right 7.848309e-01	k: 7767	n:10000
TAAR9   10000 perm   2 sec   (6460 perm/sec)   p_kst 7.767000e-01   p_cons 8.996000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/TAAR9.3_1051_10000_0.7767_0.8996_1.png
                gene_name: TAAR9
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
TACC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.007721e-02	ci left: 7.841132e-01	ci right 8.001162e-01	k: 7922	n:10000
Cons ci ratio: 1.783012e-02	ci left: 8.210683e-01	ci right 8.359398e-01	k: 8286	n:10000
KS ci ratio: 3.536729e-02	ci left: 5.413880e-01	ci right 5.609822e-01	k: 5512	n:10000
TACC1   10000 perm   2 sec   (6096 perm/sec)   p_kst 5.512000e-01   p_cons 8.286000e-01   p_joint 7.922000e-01

Outputting figure to mutsig2_images.part000000000170/TACC1.3_2470_10000_0.5512_0.8286_0.7922.png
                gene_name: TACC1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 79 percent done.
TADA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.072499e-02	ci left: 6.098000e-01	ci right 6.289304e-01	k: 6194	n:10000
Cons ci ratio: 5.547877e-02	ci left: 3.236634e-01	ci right 3.422340e-01	k: 3329	n:10000
KS ci ratio: 3.648198e-02	ci left: 5.259661e-01	ci right 5.456130e-01	k: 5358	n:10000
TADA3   10000 perm   2 sec   (6070 perm/sec)   p_kst 5.358000e-01   p_cons 3.329000e-01   p_joint 6.194000e-01

Outputting figure to mutsig2_images.part000000000170/TADA3.3_1335_10000_0.5358_0.3329_0.6194.png
                gene_name: TADA3
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 81 percent done.
SYCE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.498469e-02	ci left: 7.021059e-01	ci right 7.199711e-01	k: 7111	n:10000
Cons ci ratio: 5.759258e-02	ci left: 3.073885e-01	ci right 3.257185e-01	k: 3165	n:10000
KS ci ratio: 4.437769e-02	ci left: 4.284445e-01	ci right 4.479915e-01	k: 4382	n:10000
SYCE2   10000 perm   1 sec   (6950 perm/sec)   p_kst 4.382000e-01   p_cons 3.165000e-01   p_joint 7.111000e-01

Outputting figure to mutsig2_images.part000000000170/SYCE2.2_681_10000_0.4382_0.3165_0.7111.png
                gene_name: SYCE2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 82 percent done.
SYNGR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.516901e-02	ci left: 2.057000e-01	ci right 2.218670e-01	k: 2137	n:10000
Cons ci ratio: 8.507071e-03	ci left: 9.508566e-01	ci right 9.590757e-01	k: 9551	n:10000
KS ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
SYNGR4   10000 perm   1 sec   (7053 perm/sec)   p_kst 3.560000e-02   p_cons 9.551000e-01   p_joint 2.137000e-01

Joint ci ratio: 5.242865e-02	ci left: 2.126902e-01	ci right 2.241917e-01	k: 4368	n:20000
Cons ci ratio: 6.061531e-03	ci left: 9.514170e-01	ci right 9.572500e-01	k: 19088	n:20000
KS ci ratio: 1.419064e-01	ci left: 3.413670e-02	ci right 3.939908e-02	k: 734	n:20000
SYNGR4   20000 perm   3 sec   (6212 perm/sec)   p_kst 3.670000e-02   p_cons 9.544000e-01   p_joint 2.184000e-01

Joint ci ratio: 4.313446e-02	ci left: 2.111890e-01	ci right 2.205327e-01	k: 6475	n:30000
Cons ci ratio: 4.931415e-03	ci left: 9.522856e-01	ci right 9.570258e-01	k: 28641	n:30000
KS ci ratio: 1.163885e-01	ci left: 3.430906e-02	ci right 3.858132e-02	k: 1092	n:30000
SYNGR4   30000 perm   5 sec   (5919 perm/sec)   p_kst 3.640000e-02   p_cons 9.547000e-01   p_joint 2.158333e-01

Joint ci ratio: 3.749038e-02	ci left: 2.106099e-01	ci right 2.186816e-01	k: 8585	n:40000
Cons ci ratio: 4.274109e-03	ci left: 9.525397e-01	ci right 9.566440e-01	k: 38185	n:40000
KS ci ratio: 1.006287e-01	ci left: 3.470784e-02	ci right 3.840983e-02	k: 1461	n:40000
SYNGR4   40000 perm   7 sec   (5713 perm/sec)   p_kst 3.652500e-02   p_cons 9.546250e-01   p_joint 2.146250e-01

Joint ci ratio: 3.353344e-02	ci left: 2.110280e-01	ci right 2.182452e-01	k: 10731	n:50000
Cons ci ratio: 3.837021e-03	ci left: 9.524330e-01	ci right 9.561141e-01	k: 47715	n:50000
KS ci ratio: 8.978876e-02	ci left: 3.506887e-02	ci right 3.838520e-02	k: 1835	n:50000
SYNGR4   50000 perm   9 sec   (5512 perm/sec)   p_kst 3.670000e-02   p_cons 9.543000e-01   p_joint 2.146200e-01

Outputting figure to mutsig2_images.part000000000170/SYNGR4.2_721_50000_0.0367_0.9543_0.21462.png
                gene_name: SYNGR4
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.038 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 84 percent done.
SYNRG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.529504e-02	ci left: 6.969615e-01	ci right 7.149184e-01	k: 7060	n:10000
KS ci ratio: 1.421012e-02	ci left: 8.774593e-01	ci right 8.901162e-01	k: 8839	n:10000
SYNRG   10000 perm   2 sec   (5305 perm/sec)   p_kst 8.839000e-01   p_cons 7.060000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/SYNRG.2_4106_10000_0.8839_0.706_1.png
                gene_name: SYNRG
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
SYPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.368725e-01	ci left: 7.058968e-02	ci right 8.105902e-02	k: 757	n:10000
Cons ci ratio: 2.887085e-01	ci left: 1.548531e-02	ci right 2.080068e-02	k: 180	n:10000
KS ci ratio: 3.980231e-02	ci left: 4.824548e-01	ci right 5.021497e-01	k: 4923	n:10000
SYPL1   10000 perm   1 sec   (7026 perm/sec)   p_kst 4.923000e-01   p_cons 1.800000e-02   p_joint 7.570000e-02

Joint ci ratio: 1.994351e-01	ci left: 1.705797e-02	ci right 2.088369e-02	k: 378	n:20000
Cons ci ratio: 2.547487e-01	ci left: 1.020918e-02	ci right 1.323527e-02	k: 233	n:20000
KS ci ratio: 2.797825e-02	ci left: 4.883469e-01	ci right 5.022545e-01	k: 9906	n:20000
SYPL1   20000 perm   3 sec   (6202 perm/sec)   p_kst 4.953000e-01   p_cons 1.165000e-02   p_joint 1.890000e-02

Joint ci ratio: 1.104896e-01	ci left: 3.803765e-02	ci right 4.251860e-02	k: 1207	n:30000
Cons ci ratio: 2.089083e-01	ci left: 1.038754e-02	ci right 1.284175e-02	k: 347	n:30000
KS ci ratio: 2.290267e-02	ci left: 4.883599e-01	ci right 4.997079e-01	k: 14821	n:30000
SYPL1   30000 perm   5 sec   (5869 perm/sec)   p_kst 4.940333e-01   p_cons 1.156667e-02   p_joint 4.023333e-02

Joint ci ratio: 1.580264e-01	ci left: 1.395173e-02	ci right 1.636941e-02	k: 605	n:40000
Cons ci ratio: 1.809207e-01	ci left: 1.054986e-02	ci right 1.267193e-02	k: 463	n:40000
KS ci ratio: 1.980911e-02	ci left: 4.897634e-01	ci right 4.995874e-01	k: 19787	n:40000
SYPL1   40000 perm   7 sec   (5574 perm/sec)   p_kst 4.946750e-01   p_cons 1.157500e-02   p_joint 1.512500e-02

Joint ci ratio: 8.374583e-02	ci left: 4.021923e-02	ci right 4.375420e-02	k: 2098	n:50000
Cons ci ratio: 1.600161e-01	ci left: 1.091033e-02	ci right 1.282697e-02	k: 592	n:50000
KS ci ratio: 1.771422e-02	ci left: 4.903880e-01	ci right 4.991726e-01	k: 24739	n:50000
SYPL1   50000 perm   9 sec   (5428 perm/sec)   p_kst 4.947800e-01   p_cons 1.184000e-02   p_joint 4.196000e-02

Joint ci ratio: 7.781027e-02	ci left: 3.900202e-02	ci right 4.217595e-02	k: 2434	n:60000
Cons ci ratio: 1.471877e-01	ci left: 1.082281e-02	ci right 1.255824e-02	k: 700	n:60000
KS ci ratio: 1.610997e-02	ci left: 4.926579e-01	ci right 5.006758e-01	k: 29800	n:60000
SYPL1   60000 perm   11 sec   (5307 perm/sec)   p_kst 4.966667e-01   p_cons 1.166667e-02   p_joint 4.056667e-02

Joint ci ratio: 1.092139e-01	ci left: 1.708358e-02	ci right 1.907094e-02	k: 1264	n:70000
Cons ci ratio: 1.384999e-01	ci left: 1.053015e-02	ci right 1.211075e-02	k: 791	n:70000
KS ci ratio: 1.490846e-02	ci left: 4.931749e-01	ci right 5.005968e-01	k: 34782	n:70000
SYPL1   70000 perm   13 sec   (5190 perm/sec)   p_kst 4.968857e-01   p_cons 1.130000e-02   p_joint 1.805714e-02

Joint ci ratio: 1.118829e-01	ci left: 1.426631e-02	ci right 1.596912e-02	k: 1208	n:80000
Cons ci ratio: 1.314136e-01	ci left: 1.027667e-02	ci right 1.173412e-02	k: 879	n:80000
KS ci ratio: 1.393024e-02	ci left: 4.939667e-01	ci right 5.009085e-01	k: 39795	n:80000
SYPL1   80000 perm   16 sec   (5054 perm/sec)   p_kst 4.974375e-01   p_cons 1.098750e-02   p_joint 1.510000e-02

Joint ci ratio: 1.053712e-01	ci left: 1.434584e-02	ci right 1.595230e-02	k: 1362	n:90000
Cons ci ratio: 1.242793e-01	ci left: 1.025342e-02	ci right 1.162282e-02	k: 983	n:90000
KS ci ratio: 1.314275e-02	ci left: 4.938169e-01	ci right 5.003610e-01	k: 44738	n:90000
SYPL1   90000 perm   18 sec   (4877 perm/sec)   p_kst 4.970889e-01   p_cons 1.092222e-02   p_joint 1.513333e-02

Joint ci ratio: 5.872999e-02	ci left: 4.139602e-02	ci right 4.391059e-02	k: 4264	n:100000
Cons ci ratio: 1.175941e-01	ci left: 1.034333e-02	ci right 1.164526e-02	k: 1098	n:100000
KS ci ratio: 1.246281e-02	ci left: 4.942062e-01	ci right 5.004140e-01	k: 49731	n:100000
SYPL1   100000 perm   21 sec   (4774 perm/sec)   p_kst 4.973100e-01   p_cons 1.098000e-02   p_joint 4.264000e-02

Joint ci ratio: 4.071797e-02	ci left: 7.612463e-02	ci right 7.929768e-02	k: 8547	n:110000
Cons ci ratio: 1.111907e-01	ci left: 1.055111e-02	ci right 1.180213e-02	k: 1228	n:110000
KS ci ratio: 1.189259e-02	ci left: 4.939409e-01	ci right 4.998593e-01	k: 54659	n:110000
SYPL1   110000 perm   24 sec   (4679 perm/sec)   p_kst 4.969000e-01   p_cons 1.116364e-02   p_joint 7.770000e-02

Joint ci ratio: 4.926924e-02	ci left: 4.887243e-02	ci right 5.134937e-02	k: 6012	n:120000
Cons ci ratio: 8.438123e-02	ci left: 1.692066e-02	ci right 1.841945e-02	k: 2119	n:120000
KS ci ratio: 1.138744e-02	ci left: 4.940170e-01	ci right 4.996831e-01	k: 59622	n:120000
SYPL1   120000 perm   26 sec   (4593 perm/sec)   p_kst 4.968500e-01   p_cons 1.765833e-02   p_joint 5.010000e-02

Outputting figure to mutsig2_images.part000000000170/SYPL1.2_804_120000_0.49685_0.017658_0.0501.png
                gene_name: SYPL1
               theta_stop: 0.084 
                    nperm: 120000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.051 

Current progress: 87 percent done.
SYT12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.899237e-02	ci left: 2.971738e-01	ci right 3.153392e-01	k: 3062	n:10000
Cons ci ratio: 1.271941e-02	ci left: 8.988792e-01	ci right 9.104838e-01	k: 9048	n:10000
KS ci ratio: 9.655248e-02	ci left: 1.346260e-01	ci right 1.483836e-01	k: 1414	n:10000
SYT12   10000 perm   2 sec   (5469 perm/sec)   p_kst 1.414000e-01   p_cons 9.048000e-01   p_joint 3.062000e-01

Outputting figure to mutsig2_images.part000000000170/SYT12.2_1294_10000_0.1414_0.9048_0.3062.png
                gene_name: SYT12
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 89 percent done.
SYT17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.972318e-02	ci left: 3.736565e-01	ci right 3.928116e-01	k: 3832	n:10000
Cons ci ratio: 4.673464e-02	ci left: 4.032266e-01	ci right 4.226242e-01	k: 4129	n:10000
KS ci ratio: 3.017375e-02	ci left: 6.183401e-01	ci right 6.373854e-01	k: 6279	n:10000
SYT17   10000 perm   2 sec   (6385 perm/sec)   p_kst 6.279000e-01   p_cons 4.129000e-01   p_joint 3.832000e-01

Outputting figure to mutsig2_images.part000000000170/SYT17.2_1457_10000_0.6279_0.4129_0.3832.png
                gene_name: SYT17
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 90 percent done.
SYTL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.811568e-02	ci left: 3.035202e-01	ci right 3.217891e-01	k: 3126	n:10000
Cons ci ratio: 1.352385e-01	ci left: 7.223612e-02	ci right 8.281155e-02	k: 774	n:10000
KS ci ratio: 1.310676e-02	ci left: 8.934402e-01	ci right 9.053260e-01	k: 8995	n:10000
SYTL4   10000 perm   2 sec   (6054 perm/sec)   p_kst 8.995000e-01   p_cons 7.740000e-02   p_joint 3.126000e-01

Joint ci ratio: 5.054515e-02	ci left: 2.253219e-01	ci right 2.370564e-01	k: 4623	n:20000
Cons ci ratio: 9.556323e-02	ci left: 7.387984e-02	ci right 8.134352e-02	k: 1551	n:20000
KS ci ratio: 9.135329e-03	ci left: 8.978468e-01	ci right 9.061359e-01	k: 18041	n:20000
SYTL4   20000 perm   4 sec   (5314 perm/sec)   p_kst 9.020500e-01   p_cons 7.755000e-02   p_joint 2.311500e-01

Outputting figure to mutsig2_images.part000000000170/SYTL4.2_2080_20000_0.90205_0.07755_0.23115.png
                gene_name: SYTL4
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 92 percent done.
TAAR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.246634e-02	ci left: 1.766450e-01	ci right 1.919393e-01	k: 1842	n:10000
Cons ci ratio: 1.150553e-01	ci left: 9.798552e-02	ci right 1.100463e-01	k: 1039	n:10000
KS ci ratio: 8.324248e-02	ci left: 1.738909e-01	ci right 1.890951e-01	k: 1814	n:10000
TAAR2   10000 perm   1 sec   (6721 perm/sec)   p_kst 1.814000e-01   p_cons 1.039000e-01   p_joint 1.842000e-01

Joint ci ratio: 7.092353e-02	ci left: 1.277807e-01	ci right 1.372264e-01	k: 2649	n:20000
Cons ci ratio: 7.930929e-02	ci left: 1.045165e-01	ci right 1.131975e-01	k: 2176	n:20000
KS ci ratio: 5.885224e-02	ci left: 1.761799e-01	ci right 1.869129e-01	k: 3630	n:20000
TAAR2   20000 perm   3 sec   (5827 perm/sec)   p_kst 1.815000e-01   p_cons 1.088000e-01   p_joint 1.324500e-01

Outputting figure to mutsig2_images.part000000000170/TAAR2.2_1064_20000_0.1815_0.1088_0.13245.png
                gene_name: TAAR2
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 94 percent done.
TAAR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.474675e-02	ci left: 2.075736e-01	ci right 2.237924e-01	k: 2156	n:10000
Cons ci ratio: 8.792570e-02	ci left: 1.584608e-01	ci right 1.731345e-01	k: 1657	n:10000
KS ci ratio: 6.918678e-02	ci left: 2.345208e-01	ci right 2.514292e-01	k: 2429	n:10000
TAAR8   10000 perm   2 sec   (6414 perm/sec)   p_kst 2.429000e-01   p_cons 1.657000e-01   p_joint 2.156000e-01

Outputting figure to mutsig2_images.part000000000170/TAAR8.2_1033_10000_0.2429_0.1657_0.2156.png
                gene_name: TAAR8
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 95 percent done.
TAB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.963379e-02	ci left: 6.267827e-01	ci right 6.457378e-01	k: 6363	n:10000
Cons ci ratio: 4.054989e-02	ci left: 4.731620e-01	ci right 4.928479e-01	k: 4830	n:10000
KS ci ratio: 2.147867e-02	ci left: 7.607128e-01	ci right 7.773302e-01	k: 7691	n:10000
TAB2   10000 perm   2 sec   (6125 perm/sec)   p_kst 7.691000e-01   p_cons 4.830000e-01   p_joint 6.363000e-01

Outputting figure to mutsig2_images.part000000000170/TAB2.2_2106_10000_0.7691_0.483_0.6363.png
                gene_name: TAB2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 97 percent done.
TAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.514713e-02	ci left: 1.381531e-01	ci right 1.520544e-01	k: 1450	n:10000
Cons ci ratio: 6.183069e-02	ci left: 2.777507e-01	ci right 2.955737e-01	k: 2866	n:10000
KS ci ratio: 1.170113e-01	ci left: 9.496613e-02	ci right 1.068675e-01	k: 1008	n:10000
TAC1   10000 perm   1 sec   (7129 perm/sec)   p_kst 1.008000e-01   p_cons 2.866000e-01   p_joint 1.450000e-01

Joint ci ratio: 8.005400e-02	ci left: 1.027483e-01	ci right 1.113663e-01	k: 2140	n:20000
Cons ci ratio: 4.342898e-02	ci left: 2.831211e-01	ci right 2.957401e-01	k: 5788	n:20000
KS ci ratio: 8.299286e-02	ci left: 9.617007e-02	ci right 1.045465e-01	k: 2006	n:20000
TAC1   20000 perm   3 sec   (6198 perm/sec)   p_kst 1.003000e-01   p_cons 2.894000e-01   p_joint 1.070000e-01

Outputting figure to mutsig2_images.part000000000170/TAC1.2_414_20000_0.1003_0.2894_0.107.png
                gene_name: TAC1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 98 percent done.
TACR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.817119e-02	ci left: 3.886858e-01	ci right 4.079734e-01	k: 3983	n:10000
KS ci ratio: 1.023915e-02	ci left: 9.312316e-01	ci right 9.409125e-01	k: 9362	n:10000
TACR1   10000 perm   2 sec   (6389 perm/sec)   p_kst 9.362000e-01   p_cons 3.983000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000170/TACR1.2_1248_10000_0.9362_0.3983_1.png
                gene_name: TACR1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000170
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 170 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1532>
Subject: Job 9894168: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1532>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000171> was used as the working directory.
Started at Sat Oct  6 00:31:57 2012
Results reported at Sat Oct  6 01:26:47 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000171.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000171.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 171  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000171.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3610.71 sec.
    Max Memory :      3835 MB
    Max Swap   :      6207 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
171
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 171
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 171: processing genes 15327 - 15416
Calculating significance of each gene.
Using projection method.
15327	TAF1A	3.475725e-01
15328	TAF1B	1
15329	TAF1C	5.968752e-01
15330	TAF1D	6.369590e-01
15331	TAF1L	1.545588e-03
15332	TAF2	1.173068e-01
15333	TAF3	6.984502e-01
15334	TAF4	2.787079e-01
15335	TAF4B	2.078191e-01
15336	TAF5	3.783415e-01
15337	TAF5L	6.326068e-01
15338	TAF6	7.025966e-01
15339	TAF6L	7.229438e-01
15340	TAF7	6.485256e-01
15341	TAF7L	3.300950e-01
15342	TAF8	8.747366e-01
15343	TAF9	7.279095e-01
15344	TAF9B	1.705822e-01
15345	TAGAP	4.226867e-01
15346	TAGLN	3.260747e-02
15347	TAGLN2	4.594813e-01
15348	TAGLN3	1
15349	TAL1	1
15350	TAL2	3.722489e-01
15351	TALDO1	3.236117e-01
15352	TANC1	8.645827e-01
15353	TANC2	9.973370e-01
15354	TANK	5.662288e-02
15355	TAOK1	5.970137e-01
15356	TAOK2	9.919798e-01
15357	TAOK3	8.387505e-01
15358	TAP1	1.946940e-01
15359	TAP2	6.909140e-02
15360	TAPBP	7.929938e-02
15361	TAPBPL	9.118351e-01
15362	TAPT1	4.110973e-01
15363	TARBP1	4.560978e-01
15364	TARBP2	3.813075e-01
15365	TARDBP	1
15366	TARP	2.767734e-01
15367	TARS	3.924181e-01
15368	TARS2	4.969714e-01
15369	TARSL2	6.044753e-01
15370	TAS1R1	1.516132e-01
15371	TAS1R2	1.689602e-01
15372	TAS2R1	4.073206e-01
15373	TAS2R10	1.910043e-03
15374	TAS2R13	4.693021e-02
15375	TAS2R14	5.793037e-01
15376	TAS2R16	2.873858e-01
15377	TAS2R19	4.996975e-01
15378	TAS2R20	3.617127e-02
15379	TAS2R3	5.352003e-01
15380	TAS2R30	2.061362e-01
15381	TAS2R31	1
15382	TAS2R38	2.919594e-01
15383	TAS2R39	2.504953e-01
15384	TAS2R4	3.143321e-01
15385	TAS2R40	1
15386	TAS2R41	6.914291e-01
15387	TAS2R42	1
15388	TAS2R43	1
15389	TAS2R46	4.092083e-01
15390	TAS2R5	1.303678e-01
15391	TAS2R50	9.442247e-03
15392	TAS2R60	4.367444e-01
15393	TAS2R7	7.687919e-01
15394	TAS2R8	1.006443e-01
15395	TAS2R9	1.398176e-01
15396	TASP1	1.832493e-02
15397	TAT	3.051920e-01
15398	TATDN1	2.586325e-01
15399	TATDN2	6.765608e-02
15400	TATDN3	6.927179e-01
15401	TAX1BP1	3.261655e-01
15402	TAX1BP3	1
15403	TAZ	6.556259e-01
15404	TBC1D1	9.321040e-01
15405	TBC1D10A	7.084726e-01
15406	TBC1D10B	5.940511e-01
15407	TBC1D10C	3.738891e-01
15408	TBC1D12	8.798143e-01
15409	TBC1D13	1
15410	TBC1D14	8.524629e-01
15411	TBC1D15	7.288580e-01
15412	TBC1D16	8.659201e-01
15413	TBC1D17	2.779666e-01
15414	TBC1D19	5.949320e-01
15415	TBC1D2	8.337129e-01
15416	TBC1D20	4.258805e-01
Done

Running MutSig 2:
Scatter job 171: processing genes 15327 - 15416
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TAF1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.808495e-02	ci left: 1.579697e-01	ci right 1.726258e-01	k: 1652	n:10000
Cons ci ratio: 2.721712e-02	ci left: 6.654179e-01	ci right 6.838802e-01	k: 6747	n:10000
KS ci ratio: 1.380585e-01	ci left: 6.942795e-02	ci right 7.982148e-02	k: 745	n:10000
TAF1L   10000 perm   4 sec   (2700 perm/sec)   p_kst 7.450000e-02   p_cons 6.747000e-01   p_joint 1.652000e-01

Joint ci ratio: 7.016245e-02	ci left: 1.302431e-01	ci right 1.397633e-01	k: 2699	n:20000
Cons ci ratio: 2.011603e-02	ci left: 6.483647e-01	ci right 6.615902e-01	k: 13100	n:20000
KS ci ratio: 1.007603e-01	ci left: 6.679456e-02	ci right 7.393096e-02	k: 1406	n:20000
TAF1L   20000 perm   13 sec   (1497 perm/sec)   p_kst 7.030000e-02   p_cons 6.550000e-01   p_joint 1.349500e-01

Joint ci ratio: 5.826449e-02	ci left: 1.272671e-01	ci right 1.349379e-01	k: 3932	n:30000
Cons ci ratio: 1.636195e-02	ci left: 6.513289e-01	ci right 6.621074e-01	k: 19702	n:30000
KS ci ratio: 8.190635e-02	ci left: 6.802068e-02	ci right 7.386274e-02	k: 2127	n:30000
TAF1L   30000 perm   17 sec   (1733 perm/sec)   p_kst 7.090000e-02   p_cons 6.567333e-01   p_joint 1.310667e-01

Outputting figure to mutsig2_images.part000000000171/TAF1L.22_5485_30000_0.0709_0.65673_0.13107.png
                gene_name: TAF1L
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 2 percent done.
TATDN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.684031e-02	ci left: 1.985040e-01	ci right 2.144674e-01	k: 2064	n:10000
Cons ci ratio: 4.874877e-02	ci left: 3.830114e-01	ci right 4.022512e-01	k: 3926	n:10000
KS ci ratio: 8.830905e-02	ci left: 1.572823e-01	ci right 1.719136e-01	k: 1645	n:10000
TATDN2   10000 perm   2 sec   (4469 perm/sec)   p_kst 1.645000e-01   p_cons 3.926000e-01   p_joint 2.064000e-01

Outputting figure to mutsig2_images.part000000000171/TATDN2.9_2310_10000_0.1645_0.3926_0.2064.png
                gene_name: TATDN2
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 3 percent done.
TAF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.253245e-02	ci left: 5.823922e-01	ci right 6.017541e-01	k: 5921	n:10000
Cons ci ratio: 2.680273e-02	ci left: 6.721660e-01	ci right 6.905282e-01	k: 6814	n:10000
KS ci ratio: 5.246035e-02	ci left: 3.487950e-01	ci right 3.676877e-01	k: 3582	n:10000
TAF2   10000 perm   2 sec   (4052 perm/sec)   p_kst 3.582000e-01   p_cons 6.814000e-01   p_joint 5.921000e-01

Outputting figure to mutsig2_images.part000000000171/TAF2.8_3704_10000_0.3582_0.6814_0.5921.png
                gene_name: TAF2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 5 percent done.
TANC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.323517e-02	ci left: 7.312838e-01	ci right 7.485762e-01	k: 7400	n:10000
KS ci ratio: 1.610624e-02	ci left: 8.485573e-01	ci right 8.624349e-01	k: 8556	n:10000
TANC1   10000 perm   3 sec   (3562 perm/sec)   p_kst 8.556000e-01   p_cons 7.400000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TANC1.7_5691_10000_0.8556_0.74_1.png
                gene_name: TANC1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 6 percent done.
TAS1R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.061000e-01	ci left: 1.136922e-01	ci right 1.265300e-01	k: 1200	n:10000
Cons ci ratio: 4.129592e-02	ci left: 4.640723e-01	ci right 4.837429e-01	k: 4739	n:10000
KS ci ratio: 1.710413e-01	ci left: 4.561810e-02	ci right 5.424649e-02	k: 498	n:10000
TAS1R1   10000 perm   2 sec   (5132 perm/sec)   p_kst 4.980000e-02   p_cons 4.739000e-01   p_joint 1.200000e-01

Joint ci ratio: 6.359310e-02	ci left: 1.545491e-01	ci right 1.647501e-01	k: 3192	n:20000
Cons ci ratio: 2.977423e-02	ci left: 4.573188e-01	ci right 4.711916e-01	k: 9285	n:20000
KS ci ratio: 1.215250e-01	ci left: 4.643741e-02	ci right 5.249443e-02	k: 988	n:20000
TAS1R1   20000 perm   4 sec   (4661 perm/sec)   p_kst 4.940000e-02   p_cons 4.642500e-01   p_joint 1.596000e-01

Joint ci ratio: 7.773835e-02	ci left: 7.508792e-02	ci right 8.119407e-02	k: 2343	n:30000
Cons ci ratio: 2.373189e-02	ci left: 4.706010e-01	ci right 4.819370e-01	k: 14288	n:30000
KS ci ratio: 1.005334e-01	ci left: 4.580345e-02	ci right 5.068451e-02	k: 1446	n:30000
TAS1R1   30000 perm   7 sec   (4474 perm/sec)   p_kst 4.820000e-02   p_cons 4.762667e-01   p_joint 7.810000e-02

Joint ci ratio: 6.470214e-02	ci left: 8.132405e-02	ci right 8.678652e-02	k: 3361	n:40000
Cons ci ratio: 2.131228e-02	ci left: 4.533079e-01	ci right 4.630981e-01	k: 18328	n:40000
KS ci ratio: 8.877844e-02	ci left: 4.440804e-02	ci right 4.855812e-02	k: 1858	n:40000
TAS1R1   40000 perm   9 sec   (4338 perm/sec)   p_kst 4.645000e-02   p_cons 4.582000e-01   p_joint 8.402500e-02

Outputting figure to mutsig2_images.part000000000171/TAS1R1.7_2550_40000_0.04645_0.4582_0.084025.png
                gene_name: TAS1R1
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.087 

Current progress: 8 percent done.
TAS1R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.126117e-02	ci left: 2.815149e-01	ci right 2.994073e-01	k: 2904	n:10000
Cons ci ratio: 4.245653e-02	ci left: 4.502943e-01	ci right 4.699290e-01	k: 4601	n:10000
KS ci ratio: 8.516918e-02	ci left: 1.673034e-01	ci right 1.822866e-01	k: 1747	n:10000
TAS1R2   10000 perm   2 sec   (4886 perm/sec)   p_kst 1.747000e-01   p_cons 4.601000e-01   p_joint 2.904000e-01

Outputting figure to mutsig2_images.part000000000171/TAS1R2.7_2544_10000_0.1747_0.4601_0.2904.png
                gene_name: TAS1R2
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 9 percent done.
TAF4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.719233e-02	ci left: 6.658208e-01	ci right 6.842772e-01	k: 6751	n:10000
Cons ci ratio: 3.299920e-02	ci left: 5.754698e-01	ci right 5.948805e-01	k: 5852	n:10000
KS ci ratio: 3.477092e-02	ci left: 5.498039e-01	ci right 5.693614e-01	k: 5596	n:10000
TAF4B   10000 perm   2 sec   (4360 perm/sec)   p_kst 5.596000e-01   p_cons 5.852000e-01   p_joint 6.751000e-01

Outputting figure to mutsig2_images.part000000000171/TAF4B.6_2649_10000_0.5596_0.5852_0.6751.png
                gene_name: TAF4B
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 11 percent done.
TANK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.282482e-02	ci left: 7.381561e-01	ci right 7.553000e-01	k: 7468	n:10000
Cons ci ratio: 4.157017e-02	ci left: 4.607769e-01	ci right 4.804402e-01	k: 4706	n:10000
KS ci ratio: 3.658476e-02	ci left: 5.245646e-01	ci right 5.442154e-01	k: 5344	n:10000
TANK   10000 perm   2 sec   (5610 perm/sec)   p_kst 5.344000e-01   p_cons 4.706000e-01   p_joint 7.468000e-01

Outputting figure to mutsig2_images.part000000000171/TANK.6_1339_10000_0.5344_0.4706_0.7468.png
                gene_name: TANK
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 12 percent done.
TARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.356197e-02	ci left: 3.393548e-01	ci right 3.581334e-01	k: 3487	n:10000
Cons ci ratio: 1.238882e-01	ci left: 8.533549e-02	ci right 9.670407e-02	k: 909	n:10000
KS ci ratio: 3.582708e-02	ci left: 5.349777e-01	ci right 5.545962e-01	k: 5448	n:10000
TARS   10000 perm   2 sec   (4097 perm/sec)   p_kst 5.448000e-01   p_cons 9.090000e-02   p_joint 3.487000e-01

Joint ci ratio: 4.165521e-02	ci left: 3.004618e-01	ci right 3.132943e-01	k: 6137	n:20000
Cons ci ratio: 8.676735e-02	ci left: 8.856807e-02	ci right 9.665082e-02	k: 1851	n:20000
KS ci ratio: 2.541707e-02	ci left: 5.362655e-01	ci right 5.501219e-01	k: 10864	n:20000
TARS   20000 perm   5 sec   (3659 perm/sec)   p_kst 5.432000e-01   p_cons 9.255000e-02   p_joint 3.068500e-01

Outputting figure to mutsig2_images.part000000000171/TARS.6_2248_20000_0.5432_0.09255_0.30685.png
                gene_name: TARS
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.093 
      ci_cons_bounds_left: 0.089 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 14 percent done.
TAS2R10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.943528e-02	ci left: 7.947624e-01	ci right 8.104609e-01	k: 8027	n:10000
Cons ci ratio: 3.427985e-02	ci left: 5.568193e-01	ci right 5.763419e-01	k: 5666	n:10000
KS ci ratio: 3.489098e-02	ci left: 5.481004e-01	ci right 5.676658e-01	k: 5579	n:10000
TAS2R10   10000 perm   2 sec   (5290 perm/sec)   p_kst 5.579000e-01   p_cons 5.666000e-01   p_joint 8.027000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R10.6_928_10000_0.5579_0.5666_0.8027.png
                gene_name: TAS2R10
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 15 percent done.
TASP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.343944e-01	ci left: 7.310807e-02	ci right 8.373906e-02	k: 783	n:10000
Cons ci ratio: 6.794962e-02	ci left: 2.411415e-01	ci right 2.582045e-01	k: 2496	n:10000
KS ci ratio: 1.715849e-01	ci left: 4.533038e-02	ci right 5.393440e-02	k: 495	n:10000
TASP1   10000 perm   2 sec   (5357 perm/sec)   p_kst 4.950000e-02   p_cons 2.496000e-01   p_joint 7.830000e-02

Joint ci ratio: 9.390070e-02	ci left: 7.637423e-02	ci right 8.394836e-02	k: 1602	n:20000
Cons ci ratio: 4.799680e-02	ci left: 2.440601e-01	ci right 2.561126e-01	k: 5001	n:20000
KS ci ratio: 1.168744e-01	ci left: 5.012972e-02	ci right 5.640096e-02	k: 1064	n:20000
TASP1   20000 perm   4 sec   (4761 perm/sec)   p_kst 5.320000e-02   p_cons 2.500500e-01   p_joint 8.010000e-02

Joint ci ratio: 7.739859e-02	ci left: 7.570995e-02	ci right 8.183858e-02	k: 2362	n:30000
Cons ci ratio: 3.928359e-02	ci left: 2.442800e-01	ci right 2.541019e-01	k: 7475	n:30000
KS ci ratio: 9.582486e-02	ci left: 5.029613e-02	ci right 5.539091e-02	k: 1584	n:30000
TASP1   30000 perm   7 sec   (4522 perm/sec)   p_kst 5.280000e-02   p_cons 2.491667e-01   p_joint 7.873333e-02

Outputting figure to mutsig2_images.part000000000171/TASP1.6_1315_30000_0.0528_0.24917_0.078733.png
                gene_name: TASP1
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.079 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.082 

Current progress: 17 percent done.
TAX1BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.046880e-02	ci left: 4.741611e-01	ci right 4.938483e-01	k: 4840	n:10000
Cons ci ratio: 7.463647e-02	ci left: 2.080667e-01	ci right 2.242990e-01	k: 2161	n:10000
KS ci ratio: 2.437784e-02	ci left: 7.121969e-01	ci right 7.298742e-01	k: 7211	n:10000
TAX1BP1   10000 perm   2 sec   (4446 perm/sec)   p_kst 7.211000e-01   p_cons 2.161000e-01   p_joint 4.840000e-01

Outputting figure to mutsig2_images.part000000000171/TAX1BP1.6_2434_10000_0.7211_0.2161_0.484.png
                gene_name: TAX1BP1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 18 percent done.
TBC1D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.807373e-02	ci left: 5.046513e-01	ci right 5.243403e-01	k: 5145	n:10000
Cons ci ratio: 7.186508e-02	ci left: 2.209917e-01	ci right 2.375663e-01	k: 2292	n:10000
KS ci ratio: 3.323762e-02	ci left: 5.719593e-01	ci right 5.913931e-01	k: 5817	n:10000
TBC1D2   10000 perm   2 sec   (5076 perm/sec)   p_kst 5.817000e-01   p_cons 2.292000e-01   p_joint 5.145000e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D2.6_2806_10000_0.5817_0.2292_0.5145.png
                gene_name: TBC1D2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 20 percent done.
TAF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.615707e-02	ci left: 1.356056e-01	ci right 1.494034e-01	k: 1424	n:10000
Cons ci ratio: 1.102633e-01	ci left: 1.059801e-01	ci right 1.184468e-01	k: 1121	n:10000
KS ci ratio: 8.176015e-02	ci left: 1.792031e-01	ci right 1.945798e-01	k: 1868	n:10000
TAF4   10000 perm   2 sec   (4757 perm/sec)   p_kst 1.868000e-01   p_cons 1.121000e-01   p_joint 1.424000e-01

Joint ci ratio: 5.888196e-02	ci left: 1.760316e-01	ci right 1.867612e-01	k: 3627	n:20000
Cons ci ratio: 7.820511e-02	ci left: 1.072187e-01	ci right 1.159946e-01	k: 2231	n:20000
KS ci ratio: 5.789967e-02	ci left: 1.810238e-01	ci right 1.918676e-01	k: 3728	n:20000
TAF4   20000 perm   5 sec   (4278 perm/sec)   p_kst 1.864000e-01   p_cons 1.115500e-01   p_joint 1.813500e-01

Outputting figure to mutsig2_images.part000000000171/TAF4.5_3318_20000_0.1864_0.11155_0.18135.png
                gene_name: TAF4
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 21 percent done.
TAGAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.250119e-02	ci left: 2.179321e-01	ci right 2.344277e-01	k: 2261	n:10000
Cons ci ratio: 1.211278e-02	ci left: 9.072023e-01	ci right 9.183559e-01	k: 9129	n:10000
KS ci ratio: 1.282789e-01	ci left: 7.989663e-02	ci right 9.094628e-02	k: 853	n:10000
TAGAP   10000 perm   2 sec   (4762 perm/sec)   p_kst 8.530000e-02   p_cons 9.129000e-01   p_joint 2.261000e-01

Joint ci ratio: 5.028353e-02	ci left: 2.271553e-01	ci right 2.389224e-01	k: 4660	n:20000
Cons ci ratio: 8.263972e-03	ci left: 9.145199e-01	ci right 9.221580e-01	k: 18368	n:20000
KS ci ratio: 9.240486e-02	ci left: 7.872292e-02	ci right 8.639896e-02	k: 1650	n:20000
TAGAP   20000 perm   5 sec   (4340 perm/sec)   p_kst 8.250000e-02   p_cons 9.184000e-01   p_joint 2.330000e-01

Outputting figure to mutsig2_images.part000000000171/TAGAP.5_2250_20000_0.0825_0.9184_0.233.png
                gene_name: TAGAP
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 23 percent done.
TANC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.039597e-02	ci left: 4.750602e-01	ci right 4.947485e-01	k: 4849	n:10000
Cons ci ratio: 3.107787e-02	ci left: 6.043762e-01	ci right 6.235573e-01	k: 6140	n:10000
KS ci ratio: 5.198465e-02	ci left: 3.529698e-01	ci right 3.719104e-01	k: 3624	n:10000
TANC2   10000 perm   3 sec   (3614 perm/sec)   p_kst 3.624000e-01   p_cons 6.140000e-01   p_joint 4.849000e-01

Outputting figure to mutsig2_images.part000000000171/TANC2.5_6073_10000_0.3624_0.614_0.4849.png
                gene_name: TANC2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 24 percent done.
TAOK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.915495e-02	ci left: 4.906512e-01	ci right 5.103485e-01	k: 5005	n:10000
KS ci ratio: 1.732587e-02	ci left: 8.292056e-01	ci right 8.437978e-01	k: 8366	n:10000
TAOK1   10000 perm   2 sec   (4435 perm/sec)   p_kst 8.366000e-01   p_cons 5.005000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TAOK1.5_3082_10000_0.8366_0.5005_1.png
                gene_name: TAOK1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
TAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.445550e-02	ci left: 2.612176e-01	ci right 2.787166e-01	k: 2699	n:10000
Cons ci ratio: 9.671176e-02	ci left: 1.342342e-01	ci right 1.479756e-01	k: 1410	n:10000
KS ci ratio: 3.303319e-02	ci left: 5.749683e-01	ci right 5.943823e-01	k: 5847	n:10000
TAP1   10000 perm   2 sec   (4442 perm/sec)   p_kst 5.847000e-01   p_cons 1.410000e-01   p_joint 2.699000e-01

Outputting figure to mutsig2_images.part000000000171/TAP1.5_2471_10000_0.5847_0.141_0.2699.png
                gene_name: TAP1
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 27 percent done.
TAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.791142e-02	ci left: 1.940700e-01	ci right 2.099040e-01	k: 2019	n:10000
Cons ci ratio: 2.304204e-02	ci left: 7.345175e-01	ci right 7.517407e-01	k: 7432	n:10000
KS ci ratio: 1.143814e-01	ci left: 9.905732e-02	ci right 1.111738e-01	k: 1050	n:10000
TAP2   10000 perm   2 sec   (4546 perm/sec)   p_kst 1.050000e-01   p_cons 7.432000e-01   p_joint 2.019000e-01

Joint ci ratio: 5.256722e-02	ci left: 2.117989e-01	ci right 2.232833e-01	k: 4350	n:20000
Cons ci ratio: 1.597760e-02	ci left: 7.445425e-01	ci right 7.565846e-01	k: 15012	n:20000
KS ci ratio: 7.949380e-02	ci left: 1.040745e-01	ci right 1.127398e-01	k: 2167	n:20000
TAP2   20000 perm   5 sec   (4056 perm/sec)   p_kst 1.083500e-01   p_cons 7.506000e-01   p_joint 2.175000e-01

Outputting figure to mutsig2_images.part000000000171/TAP2.5_2190_20000_0.10835_0.7506_0.2175.png
                gene_name: TAP2
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 29 percent done.
TAPBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.253522e-02	ci left: 7.430088e-01	ci right 7.600445e-01	k: 7516	n:10000
Cons ci ratio: 6.680851e-02	ci left: 2.474683e-01	ci right 2.646740e-01	k: 2560	n:10000
KS ci ratio: 3.317620e-02	ci left: 5.728619e-01	ci right 5.922899e-01	k: 5826	n:10000
TAPBP   10000 perm   2 sec   (5070 perm/sec)   p_kst 5.826000e-01   p_cons 2.560000e-01   p_joint 7.516000e-01

Outputting figure to mutsig2_images.part000000000171/TAPBP.5_1559_10000_0.5826_0.256_0.7516.png
                gene_name: TAPBP
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 30 percent done.
TARBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.067185e-02	ci left: 4.716635e-01	ci right 4.913473e-01	k: 4815	n:10000
Cons ci ratio: 1.361933e-01	ci left: 7.126753e-02	ci right 8.178074e-02	k: 764	n:10000
KS ci ratio: 2.518543e-02	ci left: 6.987770e-01	ci right 7.167018e-01	k: 7078	n:10000
TARBP1   10000 perm   3 sec   (3725 perm/sec)   p_kst 7.078000e-01   p_cons 7.640000e-02   p_joint 4.815000e-01

Joint ci ratio: 4.474232e-02	ci left: 2.711035e-01	ci right 2.835613e-01	k: 5546	n:20000
Cons ci ratio: 1.006834e-01	ci left: 6.689222e-02	ci right 7.403327e-02	k: 1408	n:20000
KS ci ratio: 1.769736e-02	ci left: 7.040586e-01	ci right 7.166802e-01	k: 14208	n:20000
TARBP1   20000 perm   6 sec   (3486 perm/sec)   p_kst 7.104000e-01   p_cons 7.040000e-02   p_joint 2.773000e-01

Joint ci ratio: 2.838228e-02	ci left: 3.831451e-01	ci right 3.942098e-01	k: 11660	n:30000
Cons ci ratio: 8.244977e-02	ci left: 6.717056e-02	ci right 7.297970e-02	k: 2101	n:30000
KS ci ratio: 1.429323e-02	ci left: 7.097205e-01	ci right 7.199712e-01	k: 21446	n:30000
TARBP1   30000 perm   9 sec   (3339 perm/sec)   p_kst 7.148667e-01   p_cons 7.003333e-02   p_joint 3.886667e-01

Outputting figure to mutsig2_images.part000000000171/TARBP1.5_4986_30000_0.71487_0.070033_0.38867.png
                gene_name: TARBP1
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 32 percent done.
TARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.186117e-02	ci left: 3.540633e-01	ci right 3.730162e-01	k: 3635	n:10000
Cons ci ratio: 1.251182e-02	ci left: 9.017548e-01	ci right 9.132066e-01	k: 9076	n:10000
KS ci ratio: 7.859457e-02	ci left: 1.913119e-01	ci right 2.070637e-01	k: 1991	n:10000
TARS2   10000 perm   2 sec   (4941 perm/sec)   p_kst 1.991000e-01   p_cons 9.076000e-01   p_joint 3.635000e-01

Outputting figure to mutsig2_images.part000000000171/TARS2.5_2229_10000_0.1991_0.9076_0.3635.png
                gene_name: TARS2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 33 percent done.
TAS2R50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.895970e-02	ci left: 4.931507e-01	ci right 5.128476e-01	k: 5030	n:10000
Cons ci ratio: 7.150104e-02	ci left: 2.227686e-01	ci right 2.393884e-01	k: 2310	n:10000
KS ci ratio: 3.719183e-02	ci left: 5.163572e-01	ci right 5.360275e-01	k: 5262	n:10000
TAS2R50   10000 perm   2 sec   (5903 perm/sec)   p_kst 5.262000e-01   p_cons 2.310000e-01   p_joint 5.030000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R50.5_904_10000_0.5262_0.231_0.503.png
                gene_name: TAS2R50
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 35 percent done.
TAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.888455e-02	ci left: 1.290445e-01	ci right 1.425684e-01	k: 1357	n:10000
Cons ci ratio: 7.698126e-02	ci left: 1.979127e-01	ci right 2.138590e-01	k: 2058	n:10000
KS ci ratio: 1.225593e-01	ci left: 8.708509e-02	ci right 9.855338e-02	k: 927	n:10000
TAT   10000 perm   2 sec   (5960 perm/sec)   p_kst 9.270000e-02   p_cons 2.058000e-01   p_joint 1.357000e-01

Joint ci ratio: 7.110923e-02	ci left: 1.271899e-01	ci right 1.366174e-01	k: 2637	n:20000
Cons ci ratio: 5.152424e-02	ci left: 2.186336e-01	ci right 2.302466e-01	k: 4488	n:20000
KS ci ratio: 8.757747e-02	ci left: 8.704867e-02	ci right 9.507068e-02	k: 1820	n:20000
TAT   20000 perm   4 sec   (5190 perm/sec)   p_kst 9.100000e-02   p_cons 2.244000e-01   p_joint 1.318500e-01

Outputting figure to mutsig2_images.part000000000171/TAT.5_1409_20000_0.091_0.2244_0.13185.png
                gene_name: TAT
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.091 
        ci_ks_bounds_left: 0.087 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 36 percent done.
TBC1D15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.528745e-02	ci left: 1.669102e-01	ci right 1.818800e-01	k: 1743	n:10000
Cons ci ratio: 1.018556e-01	ci left: 1.223911e-01	ci right 1.356258e-01	k: 1289	n:10000
KS ci ratio: 5.895076e-02	ci left: 2.974712e-01	ci right 3.156416e-01	k: 3065	n:10000
TBC1D15   10000 perm   2 sec   (5233 perm/sec)   p_kst 3.065000e-01   p_cons 1.289000e-01   p_joint 1.743000e-01

Joint ci ratio: 5.204020e-02	ci left: 2.152159e-01	ci right 2.267653e-01	k: 4419	n:20000
Cons ci ratio: 7.437585e-02	ci left: 1.173959e-01	ci right 1.265143e-01	k: 2438	n:20000
KS ci ratio: 4.240630e-02	ci left: 2.929578e-01	ci right 3.057006e-01	k: 5986	n:20000
TBC1D15   20000 perm   5 sec   (4435 perm/sec)   p_kst 2.993000e-01   p_cons 1.219000e-01   p_joint 2.209500e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D15.5_2272_20000_0.2993_0.1219_0.22095.png
                gene_name: TBC1D15
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 38 percent done.
TAF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.863152e-02	ci left: 1.563004e-01	ci right 1.708961e-01	k: 1635	n:10000
Cons ci ratio: 3.580541e-02	ci left: 5.352782e-01	ci right 5.548955e-01	k: 5451	n:10000
KS ci ratio: 1.187199e-01	ci left: 9.243507e-02	ci right 1.042001e-01	k: 982	n:10000
TAF3   10000 perm   2 sec   (4565 perm/sec)   p_kst 9.820000e-02   p_cons 5.451000e-01   p_joint 1.635000e-01

Joint ci ratio: 6.639951e-02	ci left: 1.434502e-01	ci right 1.533522e-01	k: 2967	n:20000
Cons ci ratio: 2.502018e-02	ci left: 5.440746e-01	ci right 5.579105e-01	k: 11020	n:20000
KS ci ratio: 8.354924e-02	ci left: 9.499246e-02	ci right 1.033245e-01	k: 1982	n:20000
TAF3   20000 perm   5 sec   (4143 perm/sec)   p_kst 9.910000e-02   p_cons 5.510000e-01   p_joint 1.483500e-01

Outputting figure to mutsig2_images.part000000000171/TAF3.4_2818_20000_0.0991_0.551_0.14835.png
                gene_name: TAF3
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 39 percent done.
TAF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.834908e-02	ci left: 1.922969e-01	ci right 2.080782e-01	k: 2001	n:10000
Cons ci ratio: 2.019685e-01	ci left: 3.262466e-02	ci right 4.004861e-02	k: 362	n:10000
KS ci ratio: 7.686376e-02	ci left: 1.984054e-01	ci right 2.143660e-01	k: 2063	n:10000
TAF5   10000 perm   2 sec   (4741 perm/sec)   p_kst 2.063000e-01   p_cons 3.620000e-02   p_joint 2.001000e-01

Joint ci ratio: 7.316803e-02	ci left: 1.208892e-01	ci right 1.301200e-01	k: 2509	n:20000
Cons ci ratio: 1.404254e-01	ci left: 3.486113e-02	ci right 4.017442e-02	k: 749	n:20000
KS ci ratio: 5.426046e-02	ci left: 2.013038e-01	ci right 2.125815e-01	k: 4138	n:20000
TAF5   20000 perm   5 sec   (4366 perm/sec)   p_kst 2.069000e-01   p_cons 3.745000e-02   p_joint 1.254500e-01

Joint ci ratio: 7.155763e-02	ci left: 8.767012e-02	ci right 9.420934e-02	k: 2727	n:30000
Cons ci ratio: 1.205112e-01	ci left: 3.201016e-02	ci right 3.614738e-02	k: 1021	n:30000
KS ci ratio: 4.357237e-02	ci left: 2.078162e-01	ci right 2.171063e-01	k: 6373	n:30000
TAF5   30000 perm   7 sec   (4161 perm/sec)   p_kst 2.124333e-01   p_cons 3.403333e-02   p_joint 9.090000e-02

Joint ci ratio: 6.552480e-02	ci left: 7.942769e-02	ci right 8.483316e-02	k: 3284	n:40000
Cons ci ratio: 9.912541e-02	ci left: 3.575694e-02	ci right 3.951056e-02	k: 1504	n:40000
KS ci ratio: 3.783001e-02	ci left: 2.076059e-01	ci right 2.156360e-01	k: 8464	n:40000
TAF5   40000 perm   10 sec   (4031 perm/sec)   p_kst 2.116000e-01   p_cons 3.760000e-02   p_joint 8.210000e-02

Outputting figure to mutsig2_images.part000000000171/TAF5.4_2447_40000_0.2116_0.0376_0.0821.png
                gene_name: TAF5
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.038 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.040 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.079 
    ci_joint_bounds_right: 0.085 

Current progress: 41 percent done.
TAF7L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.100668e-02	ci left: 7.686102e-01	ci right 7.850283e-01	k: 7769	n:10000
KS ci ratio: 1.871463e-02	ci left: 8.066388e-01	ci right 8.219776e-01	k: 8144	n:10000
TAF7L   10000 perm   2 sec   (5399 perm/sec)   p_kst 8.144000e-01   p_cons 7.769000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TAF7L.4_1441_10000_0.8144_0.7769_1.png
                gene_name: TAF7L
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
TAGLN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.737663e-02	ci left: 3.966523e-01	ci right 4.160023e-01	k: 4063	n:10000
Cons ci ratio: 6.331431e-02	ci left: 2.682448e-01	ci right 2.858852e-01	k: 2770	n:10000
KS ci ratio: 4.897433e-02	ci left: 3.808216e-01	ci right 4.000423e-01	k: 3904	n:10000
TAGLN   10000 perm   2 sec   (6646 perm/sec)   p_kst 3.904000e-01   p_cons 2.770000e-01   p_joint 4.063000e-01

Outputting figure to mutsig2_images.part000000000171/TAGLN.4_622_10000_0.3904_0.277_0.4063.png
                gene_name: TAGLN
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 44 percent done.
TAOK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.411732e-02	ci left: 4.313368e-01	ci right 4.508976e-01	k: 4411	n:10000
Cons ci ratio: 3.069893e-02	ci left: 6.102019e-01	ci right 6.293283e-01	k: 6198	n:10000
KS ci ratio: 5.798077e-02	ci left: 3.045120e-01	ci right 3.227967e-01	k: 3136	n:10000
TAOK3   10000 perm   2 sec   (5245 perm/sec)   p_kst 3.136000e-01   p_cons 6.198000e-01   p_joint 4.411000e-01

Outputting figure to mutsig2_images.part000000000171/TAOK3.4_2773_10000_0.3136_0.6198_0.4411.png
                gene_name: TAOK3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 45 percent done.
TAS2R20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.329228e-02	ci left: 5.711569e-01	ci right 5.905960e-01	k: 5809	n:10000
Cons ci ratio: 1.709886e-03	ci left: 9.971567e-01	ci right 9.989329e-01	k: 9982	n:10000
KS ci ratio: 4.375241e-02	ci left: 4.354264e-01	ci right 4.550056e-01	k: 4452	n:10000
TAS2R20   10000 perm   2 sec   (5971 perm/sec)   p_kst 4.452000e-01   p_cons 9.982000e-01   p_joint 5.809000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R20.4_934_10000_0.4452_0.9982_0.5809.png
                gene_name: TAS2R20
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 47 percent done.
TBC1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.184528e-01	ci left: 9.282438e-02	ci right 1.046106e-01	k: 986	n:10000
Cons ci ratio: 2.131928e-01	ci left: 2.920604e-02	ci right 3.626959e-02	k: 326	n:10000
KS ci ratio: 8.184094e-02	ci left: 1.789079e-01	ci right 1.942751e-01	k: 1865	n:10000
TBC1D1   10000 perm   2 sec   (4684 perm/sec)   p_kst 1.865000e-01   p_cons 3.260000e-02   p_joint 9.860000e-02

Joint ci ratio: 1.240530e-01	ci left: 4.459306e-02	ci right 5.053936e-02	k: 950	n:20000
Cons ci ratio: 1.430211e-01	ci left: 3.360565e-02	ci right 3.883031e-02	k: 723	n:20000
KS ci ratio: 5.875341e-02	ci left: 1.766741e-01	ci right 1.874185e-01	k: 3640	n:20000
TBC1D1   20000 perm   5 sec   (4238 perm/sec)   p_kst 1.820000e-01   p_cons 3.615000e-02   p_joint 4.750000e-02

Joint ci ratio: 8.076819e-02	ci left: 6.985214e-02	ci right 7.576424e-02	k: 2183	n:30000
Cons ci ratio: 1.225110e-01	ci left: 3.097489e-02	ci right 3.504953e-02	k: 989	n:30000
KS ci ratio: 4.781438e-02	ci left: 1.786387e-01	ci right 1.874228e-01	k: 5490	n:30000
TBC1D1   30000 perm   7 sec   (4041 perm/sec)   p_kst 1.830000e-01   p_cons 3.296667e-02   p_joint 7.276667e-02

Joint ci ratio: 7.592585e-02	ci left: 6.009805e-02	ci right 6.486571e-02	k: 2498	n:40000
Cons ci ratio: 1.071518e-01	ci left: 3.063765e-02	ci right 3.413066e-02	k: 1294	n:40000
KS ci ratio: 4.199715e-02	ci left: 1.750806e-01	ci right 1.826161e-01	k: 7153	n:40000
TBC1D1   40000 perm   10 sec   (3918 perm/sec)   p_kst 1.788250e-01   p_cons 3.235000e-02   p_joint 6.245000e-02

Joint ci ratio: 6.242451e-02	ci left: 7.081353e-02	ci right 7.539619e-02	k: 3654	n:50000
Cons ci ratio: 9.471923e-02	ci left: 3.154908e-02	ci right 3.470543e-02	k: 1655	n:50000
KS ci ratio: 3.767766e-02	ci left: 1.745964e-01	ci right 1.813210e-01	k: 8897	n:50000
TBC1D1   50000 perm   13 sec   (3836 perm/sec)   p_kst 1.779400e-01   p_cons 3.310000e-02   p_joint 7.308000e-02

Outputting figure to mutsig2_images.part000000000171/TBC1D1.4_3583_50000_0.17794_0.0331_0.07308.png
                gene_name: TBC1D1
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.032 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.075 

Current progress: 48 percent done.
TBC1D17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.280928e-02	ci left: 5.782787e-01	ci right 5.976700e-01	k: 5880	n:10000
Cons ci ratio: 7.114081e-02	ci left: 2.245456e-01	ci right 2.412103e-01	k: 2328	n:10000
KS ci ratio: 2.942928e-02	ci left: 6.299998e-01	ci right 6.489189e-01	k: 6395	n:10000
TBC1D17   10000 perm   2 sec   (4676 perm/sec)   p_kst 6.395000e-01   p_cons 2.328000e-01   p_joint 5.880000e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D17.4_2015_10000_0.6395_0.2328_0.588.png
                gene_name: TBC1D17
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 50 percent done.
TAF1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.915936e-03	ci left: 9.569143e-01	ci right 9.646143e-01	k: 9609	n:10000
KS ci ratio: 1.038389e-02	ci left: 9.294731e-01	ci right 9.392720e-01	k: 9345	n:10000
TAF1C   10000 perm   2 sec   (4840 perm/sec)   p_kst 9.345000e-01   p_cons 9.609000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TAF1C.3_2662_10000_0.9345_0.9609_1.png
                gene_name: TAF1C
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
TAF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.744616e-02	ci left: 5.129549e-01	ci right 5.326318e-01	k: 5228	n:10000
KS ci ratio: 3.171070e-02	ci left: 5.947369e-01	ci right 6.140022e-01	k: 6044	n:10000
TAF6   10000 perm   2 sec   (5632 perm/sec)   p_kst 6.044000e-01   p_cons 5.228000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TAF6.3_2090_10000_0.6044_0.5228_1.png
                gene_name: TAF6
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
TALDO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.154516e-02	ci left: 4.610765e-01	ci right 4.807405e-01	k: 4709	n:10000
Cons ci ratio: 1.285258e-01	ci left: 7.960546e-02	ci right 9.063764e-02	k: 850	n:10000
KS ci ratio: 1.759750e-02	ci left: 8.248311e-01	ci right 8.395749e-01	k: 8323	n:10000
TALDO1   10000 perm   2 sec   (6134 perm/sec)   p_kst 8.323000e-01   p_cons 8.500000e-02   p_joint 4.709000e-01

Joint ci ratio: 3.937113e-02	ci left: 3.248265e-01	ci right 3.379226e-01	k: 6627	n:20000
Cons ci ratio: 8.547643e-02	ci left: 9.106848e-02	ci right 9.924966e-02	k: 1902	n:20000
KS ci ratio: 1.240263e-02	ci left: 8.279600e-01	ci right 8.383429e-01	k: 16664	n:20000
TALDO1   20000 perm   4 sec   (5338 perm/sec)   p_kst 8.332000e-01   p_cons 9.510000e-02   p_joint 3.313500e-01

Outputting figure to mutsig2_images.part000000000171/TALDO1.3_1046_20000_0.8332_0.0951_0.33135.png
                gene_name: TALDO1
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 55 percent done.
TAOK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.498200e-01	ci left: 1.023265e-02	ci right 1.465817e-02	k: 123	n:10000
Cons ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
KS ci ratio: 5.644158e-01	ci left: 3.455366e-03	ci right 6.245157e-03	k: 47	n:10000
TAOK2   10000 perm   2 sec   (4473 perm/sec)   p_kst 4.700000e-03   p_cons 4.130000e-02   p_joint 1.230000e-02

Joint ci ratio: 2.984783e-01	ci left: 7.274556e-03	ci right 9.871356e-03	k: 170	n:20000
Cons ci ratio: 1.353497e-01	ci left: 3.751972e-02	ci right 4.301496e-02	k: 804	n:20000
KS ci ratio: 4.145833e-01	ci left: 3.530379e-03	ci right 5.418154e-03	k: 88	n:20000
TAOK2   20000 perm   5 sec   (4021 perm/sec)   p_kst 4.400000e-03   p_cons 4.020000e-02   p_joint 8.500000e-03

Joint ci ratio: 3.203351e-01	ci left: 4.172084e-03	ci right 5.792735e-03	k: 148	n:30000
Cons ci ratio: 1.101574e-01	ci left: 3.826480e-02	ci right 4.275808e-02	k: 1214	n:30000
KS ci ratio: 3.443882e-01	ci left: 3.560779e-03	ci right 5.071034e-03	k: 128	n:30000
TAOK2   30000 perm   8 sec   (3751 perm/sec)   p_kst 4.266667e-03   p_cons 4.046667e-02   p_joint 4.933333e-03

Joint ci ratio: 1.470722e-01	ci left: 1.616533e-02	ci right 1.875540e-02	k: 697	n:40000
Cons ci ratio: 9.521588e-02	ci left: 3.871123e-02	ci right 4.260581e-02	k: 1625	n:40000
KS ci ratio: 3.073562e-01	ci left: 3.428260e-03	ci right 4.695408e-03	k: 161	n:40000
TAOK2   40000 perm   11 sec   (3679 perm/sec)   p_kst 4.025000e-03   p_cons 4.062500e-02   p_joint 1.742500e-02

Joint ci ratio: 1.186609e-01	ci left: 2.009114e-02	ci right 2.264485e-02	k: 1067	n:50000
Cons ci ratio: 8.565928e-02	ci left: 3.847542e-02	ci right 4.193823e-02	k: 2009	n:50000
KS ci ratio: 2.738917e-01	ci left: 3.521589e-03	ci right 4.657178e-03	k: 203	n:50000
TAOK2   50000 perm   14 sec   (3620 perm/sec)   p_kst 4.060000e-03   p_cons 4.018000e-02   p_joint 2.134000e-02

Joint ci ratio: 1.814721e-01	ci left: 7.016139e-03	ci right 8.432101e-03	k: 462	n:60000
Cons ci ratio: 7.804441e-02	ci left: 3.877305e-02	ci right 4.193827e-02	k: 2420	n:60000
KS ci ratio: 2.494151e-01	ci left: 3.588852e-03	ci right 4.626685e-03	k: 245	n:60000
TAOK2   60000 perm   17 sec   (3564 perm/sec)   p_kst 4.083333e-03   p_cons 4.033333e-02   p_joint 7.700000e-03

Joint ci ratio: 1.802068e-01	ci left: 6.109043e-03	ci right 7.332384e-03	k: 469	n:70000
Cons ci ratio: 7.215539e-02	ci left: 3.899545e-02	ci right 4.192851e-02	k: 2831	n:70000
KS ci ratio: 2.333761e-01	ci left: 3.545935e-03	ci right 4.495905e-03	k: 280	n:70000
TAOK2   70000 perm   20 sec   (3509 perm/sec)   p_kst 4.000000e-03   p_cons 4.044286e-02   p_joint 6.700000e-03

Joint ci ratio: 1.335791e-01	ci left: 9.938153e-03	ci right 1.137267e-02	k: 851	n:80000
Cons ci ratio: 6.746887e-02	ci left: 3.911983e-02	ci right 4.186362e-02	k: 3238	n:80000
KS ci ratio: 2.190385e-01	ci left: 3.550801e-03	ci right 4.435767e-03	k: 318	n:80000
TAOK2   80000 perm   23 sec   (3455 perm/sec)   p_kst 3.975000e-03   p_cons 4.047500e-02   p_joint 1.063750e-02

Joint ci ratio: 1.626669e-01	ci left: 5.889423e-03	ci right 6.942771e-03	k: 576	n:90000
Cons ci ratio: 6.903199e-02	ci left: 3.339357e-02	ci right 3.579210e-02	k: 3112	n:90000
KS ci ratio: 2.059005e-01	ci left: 3.598131e-03	ci right 4.434336e-03	k: 360	n:90000
TAOK2   90000 perm   26 sec   (3405 perm/sec)   p_kst 4.000000e-03   p_cons 3.457778e-02   p_joint 6.400000e-03

Joint ci ratio: 8.962667e-02	ci left: 1.792806e-02	ci right 1.962001e-02	k: 1876	n:100000
Cons ci ratio: 6.600408e-02	ci left: 3.294433e-02	ci right 3.520280e-02	k: 3406	n:100000
KS ci ratio: 1.770157e-01	ci left: 4.447941e-03	ci right 5.321157e-03	k: 487	n:100000
TAOK2   100000 perm   30 sec   (3349 perm/sec)   p_kst 4.870000e-03   p_cons 3.406000e-02   p_joint 1.876000e-02

Joint ci ratio: 9.722259e-02	ci left: 1.385509e-02	ci right 1.527976e-02	k: 1601	n:110000
Cons ci ratio: 6.287776e-02	ci left: 3.305316e-02	ci right 3.520785e-02	k: 3753	n:110000
KS ci ratio: 1.690630e-01	ci left: 4.452358e-03	ci right 5.283170e-03	k: 534	n:110000
TAOK2   110000 perm   34 sec   (3279 perm/sec)   p_kst 4.854545e-03   p_cons 3.411818e-02   p_joint 1.455455e-02

Joint ci ratio: 8.299706e-02	ci left: 1.749199e-02	ci right 1.901475e-02	k: 2189	n:120000
Cons ci ratio: 6.014217e-02	ci left: 3.316239e-02	ci right 3.522687e-02	k: 4102	n:120000
KS ci ratio: 1.619543e-01	ci left: 4.464766e-03	ci right 5.259453e-03	k: 582	n:120000
TAOK2   120000 perm   37 sec   (3234 perm/sec)   p_kst 4.850000e-03   p_cons 3.418333e-02   p_joint 1.824167e-02

Joint ci ratio: 7.870820e-02	ci left: 1.798562e-02	ci right 1.946673e-02	k: 2433	n:130000
Cons ci ratio: 5.780912e-02	ci left: 3.317310e-02	ci right 3.515544e-02	k: 4440	n:130000
KS ci ratio: 1.550568e-01	ci left: 4.512858e-03	ci right 5.278715e-03	k: 635	n:130000
TAOK2   130000 perm   41 sec   (3173 perm/sec)   p_kst 4.884615e-03   p_cons 3.415385e-02   p_joint 1.871538e-02

Joint ci ratio: 8.398818e-02	ci left: 1.467752e-02	ci right 1.597124e-02	k: 2144	n:140000
Cons ci ratio: 5.566180e-02	ci left: 3.326112e-02	ci right 3.517252e-02	k: 4789	n:140000
KS ci ratio: 1.491894e-01	ci left: 4.540938e-03	ci right 5.279797e-03	k: 686	n:140000
TAOK2   140000 perm   45 sec   (3134 perm/sec)   p_kst 4.900000e-03   p_cons 3.420714e-02   p_joint 1.531429e-02

Joint ci ratio: 8.271160e-02	ci left: 1.414274e-02	ci right 1.536946e-02	k: 2212	n:150000
Cons ci ratio: 5.358628e-02	ci left: 3.352284e-02	ci right 3.537521e-02	k: 5166	n:150000
KS ci ratio: 1.447318e-01	ci left: 4.514330e-03	ci right 5.225016e-03	k: 729	n:150000
TAOK2   150000 perm   48 sec   (3097 perm/sec)   p_kst 4.860000e-03   p_cons 3.444000e-02   p_joint 1.474667e-02

Joint ci ratio: 9.615186e-02	ci left: 9.786640e-03	ci right 1.078123e-02	k: 1644	n:160000
Cons ci ratio: 5.176550e-02	ci left: 3.370361e-02	ci right 3.550080e-02	k: 5535	n:160000
KS ci ratio: 1.403777e-01	ci left: 4.509431e-03	ci right 5.196201e-03	k: 775	n:160000
TAOK2   160000 perm   52 sec   (3060 perm/sec)   p_kst 4.843750e-03   p_cons 3.459375e-02   p_joint 1.027500e-02

Joint ci ratio: 9.349237e-02	ci left: 9.756520e-03	ci right 1.071912e-02	k: 1739	n:170000
Cons ci ratio: 5.009654e-02	ci left: 3.389311e-02	ci right 3.564045e-02	k: 5909	n:170000
KS ci ratio: 1.374058e-01	ci left: 4.437209e-03	ci right 5.097502e-03	k: 809	n:170000
TAOK2   170000 perm   56 sec   (3019 perm/sec)   p_kst 4.758824e-03   p_cons 3.475882e-02   p_joint 1.022941e-02

Joint ci ratio: 1.011316e-01	ci left: 7.858952e-03	ci right 8.701444e-03	k: 1489	n:180000
Cons ci ratio: 4.881718e-02	ci left: 3.373845e-02	ci right 3.543214e-02	k: 6224	n:180000
KS ci ratio: 1.325785e-01	ci left: 4.512787e-03	ci right 5.158875e-03	k: 869	n:180000
TAOK2   180000 perm   60 sec   (2975 perm/sec)   p_kst 4.827778e-03   p_cons 3.457778e-02   p_joint 8.272222e-03

Joint ci ratio: 1.063883e-01	ci left: 6.717124e-03	ci right 7.476979e-03	k: 1347	n:190000
Cons ci ratio: 4.738769e-02	ci left: 3.393877e-02	ci right 3.559126e-02	k: 6604	n:190000
KS ci ratio: 1.293495e-01	ci left: 4.499262e-03	ci right 5.126520e-03	k: 913	n:190000
TAOK2   190000 perm   65 sec   (2938 perm/sec)   p_kst 4.805263e-03   p_cons 3.475789e-02   p_joint 7.089474e-03

Joint ci ratio: 1.091730e-01	ci left: 6.055184e-03	ci right 6.759237e-03	k: 1280	n:200000
Cons ci ratio: 4.622444e-02	ci left: 3.390709e-02	ci right 3.551643e-02	k: 6941	n:200000
KS ci ratio: 1.259497e-01	ci left: 4.516318e-03	ci right 5.128170e-03	k: 963	n:200000
TAOK2   200000 perm   69 sec   (2902 perm/sec)   p_kst 4.815000e-03   p_cons 3.470500e-02   p_joint 6.400000e-03

Joint ci ratio: 1.094911e-01	ci left: 5.734368e-03	ci right 6.403186e-03	k: 1273	n:210000
Cons ci ratio: 4.517822e-02	ci left: 3.382708e-02	ci right 3.539533e-02	k: 7267	n:210000
KS ci ratio: 1.229877e-01	ci left: 4.518097e-03	ci right 5.114746e-03	k: 1010	n:210000
TAOK2   210000 perm   73 sec   (2869 perm/sec)   p_kst 4.809524e-03   p_cons 3.460476e-02   p_joint 6.061905e-03

Joint ci ratio: 9.829465e-02	ci left: 6.824333e-03	ci right 7.534199e-03	k: 1578	n:220000
Cons ci ratio: 4.419695e-02	ci left: 3.375921e-02	ci right 3.528945e-02	k: 7594	n:220000
KS ci ratio: 1.201681e-01	ci left: 4.524276e-03	ci right 5.107070e-03	k: 1058	n:220000
TAOK2   220000 perm   78 sec   (2835 perm/sec)   p_kst 4.809091e-03   p_cons 3.451818e-02   p_joint 7.172727e-03

Joint ci ratio: 9.601033e-02	ci left: 6.850033e-03	ci right 7.545082e-03	k: 1654	n:230000
Cons ci ratio: 4.318669e-02	ci left: 3.383526e-02	ci right 3.533302e-02	k: 7953	n:230000
KS ci ratio: 1.169516e-01	ci left: 4.576490e-03	ci right 5.149141e-03	k: 1117	n:230000
TAOK2   230000 perm   82 sec   (2800 perm/sec)   p_kst 4.856522e-03   p_cons 3.457826e-02   p_joint 7.191304e-03

Joint ci ratio: 9.804340e-02	ci left: 6.292133e-03	ci right 6.944868e-03	k: 1587	n:240000
Cons ci ratio: 4.238284e-02	ci left: 3.368676e-02	ci right 3.514951e-02	k: 8259	n:240000
KS ci ratio: 1.144699e-01	ci left: 4.584062e-03	ci right 5.144665e-03	k: 1166	n:240000
TAOK2   240000 perm   87 sec   (2768 perm/sec)   p_kst 4.858333e-03   p_cons 3.441250e-02   p_joint 6.612500e-03

Joint ci ratio: 1.050017e-01	ci left: 5.252789e-03	ci right 5.838764e-03	k: 1385	n:250000
Cons ci ratio: 4.158706e-02	ci left: 3.360582e-02	ci right 3.503700e-02	k: 8579	n:250000
KS ci ratio: 1.121398e-01	ci left: 4.591146e-03	ci right 5.140430e-03	k: 1215	n:250000
TAOK2   250000 perm   92 sec   (2727 perm/sec)   p_kst 4.860000e-03   p_cons 3.431600e-02   p_joint 5.540000e-03

Joint ci ratio: 1.053190e-01	ci left: 5.020767e-03	ci right 5.582655e-03	k: 1377	n:260000
Cons ci ratio: 4.075158e-02	ci left: 3.366464e-02	ci right 3.506884e-02	k: 8934	n:260000
KS ci ratio: 1.100776e-01	ci left: 4.586569e-03	ci right 5.124560e-03	k: 1261	n:260000
TAOK2   260000 perm   97 sec   (2688 perm/sec)   p_kst 4.850000e-03   p_cons 3.436154e-02   p_joint 5.296154e-03

Joint ci ratio: 1.036785e-01	ci left: 4.993513e-03	ci right 5.543115e-03	k: 1421	n:270000
Cons ci ratio: 3.999572e-02	ci left: 3.366801e-02	ci right 3.504571e-02	k: 9275	n:270000
KS ci ratio: 1.082500e-01	ci left: 4.571605e-03	ci right 5.098370e-03	k: 1304	n:270000
TAOK2   270000 perm   102 sec   (2652 perm/sec)   p_kst 4.829630e-03   p_cons 3.435185e-02   p_joint 5.262963e-03

Joint ci ratio: 1.019726e-01	ci left: 4.982191e-03	ci right 5.520985e-03	k: 1469	n:280000
Cons ci ratio: 3.932703e-02	ci left: 3.359354e-02	ci right 3.494469e-02	k: 9594	n:280000
KS ci ratio: 1.064708e-01	ci left: 4.561255e-03	ci right 5.077648e-03	k: 1348	n:280000
TAOK2   280000 perm   107 sec   (2620 perm/sec)   p_kst 4.814286e-03   p_cons 3.426429e-02   p_joint 5.246429e-03

Joint ci ratio: 1.000176e-01	ci left: 5.005343e-03	ci right 5.535653e-03	k: 1527	n:290000
Cons ci ratio: 3.860219e-02	ci left: 3.367470e-02	ci right 3.500359e-02	k: 9957	n:290000
KS ci ratio: 1.045506e-01	ci left: 4.571835e-03	ci right 5.079518e-03	k: 1398	n:290000
TAOK2   290000 perm   112 sec   (2589 perm/sec)   p_kst 4.820690e-03   p_cons 3.433448e-02   p_joint 5.265517e-03

Joint ci ratio: 9.854638e-02	ci left: 4.988021e-03	ci right 5.508273e-03	k: 1573	n:300000
Cons ci ratio: 3.801145e-02	ci left: 3.358552e-02	ci right 3.489017e-02	k: 10270	n:300000
KS ci ratio: 1.029092e-01	ci left: 4.565548e-03	ci right 5.064092e-03	k: 1443	n:300000
TAOK2   300000 perm   117 sec   (2561 perm/sec)   p_kst 4.810000e-03   p_cons 3.423333e-02   p_joint 5.243333e-03

Joint ci ratio: 9.704793e-02	ci left: 4.981315e-03	ci right 5.492517e-03	k: 1622	n:310000
Cons ci ratio: 3.740313e-02	ci left: 3.357896e-02	ci right 3.486203e-02	k: 10607	n:310000
KS ci ratio: 1.014454e-01	ci left: 4.550292e-03	ci right 5.039681e-03	k: 1485	n:310000
TAOK2   310000 perm   122 sec   (2534 perm/sec)   p_kst 4.790323e-03   p_cons 3.421613e-02   p_joint 5.232258e-03

Joint ci ratio: 1.011798e-01	ci left: 4.432448e-03	ci right 4.907840e-03	k: 1493	n:320000
Cons ci ratio: 3.684228e-02	ci left: 3.353889e-02	ci right 3.480081e-02	k: 10933	n:320000
KS ci ratio: 9.968257e-02	ci left: 4.569557e-03	ci right 5.051978e-03	k: 1538	n:320000
TAOK2   320000 perm   128 sec   (2501 perm/sec)   p_kst 4.806250e-03   p_cons 3.416562e-02   p_joint 4.665625e-03

Joint ci ratio: 9.939829e-02	ci left: 4.457667e-03	ci right 4.926854e-03	k: 1547	n:330000
Cons ci ratio: 3.626926e-02	ci left: 3.356748e-02	ci right 3.481042e-02	k: 11281	n:330000
KS ci ratio: 9.785422e-02	ci left: 4.602506e-03	ci right 5.078981e-03	k: 1596	n:330000
TAOK2   330000 perm   133 sec   (2475 perm/sec)   p_kst 4.836364e-03   p_cons 3.418485e-02   p_joint 4.687879e-03

Outputting figure to mutsig2_images.part000000000171/TAOK2.3_4698_330000_0.0048364_0.034185_0.0046879.png
                gene_name: TAOK2
               theta_stop: 0.099 
                    nperm: 330000 
                     p_ks: 0.0048 
        ci_ks_bounds_left: 0.0046 
       ci_ks_bounds_right: 0.0051 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.0047 
     ci_joint_bounds_left: 0.0045 
    ci_joint_bounds_right: 0.0049 

Current progress: 56 percent done.
TARBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.145810e-01	ci left: 1.943009e-03	ci right 4.162249e-03	k: 29	n:10000
Cons ci ratio: 1.767052e-01	ci left: 4.274287e-02	ci right 5.112360e-02	k: 468	n:10000
KS ci ratio: 3.313660e-01	ci left: 1.151417e-02	ci right 1.617538e-02	k: 137	n:10000
TARBP2   10000 perm   2 sec   (5899 perm/sec)   p_kst 1.370000e-02   p_cons 4.680000e-02   p_joint 2.900000e-03

Joint ci ratio: 3.949987e-01	ci left: 3.934731e-03	ci right 5.913431e-03	k: 97	n:20000
Cons ci ratio: 1.254441e-01	ci left: 4.362287e-02	ci right 4.950986e-02	k: 930	n:20000
KS ci ratio: 2.434210e-01	ci left: 1.124125e-02	ci right 1.440275e-02	k: 255	n:20000
TARBP2   20000 perm   4 sec   (5319 perm/sec)   p_kst 1.275000e-02   p_cons 4.650000e-02   p_joint 4.850000e-03

Joint ci ratio: 3.933177e-01	ci left: 2.652810e-03	ci right 3.979598e-03	k: 98	n:30000
Cons ci ratio: 1.029875e-01	ci left: 4.368940e-02	ci right 4.846567e-02	k: 1381	n:30000
KS ci ratio: 1.944396e-01	ci left: 1.206606e-02	ci right 1.469610e-02	k: 400	n:30000
TARBP2   30000 perm   6 sec   (5035 perm/sec)   p_kst 1.333333e-02   p_cons 4.603333e-02   p_joint 3.266667e-03

Joint ci ratio: 2.517445e-01	ci left: 5.266731e-03	ci right 6.806308e-03	k: 240	n:40000
Cons ci ratio: 8.867843e-02	ci left: 4.450592e-02	ci right 4.866022e-02	k: 1862	n:40000
KS ci ratio: 1.675454e-01	ci left: 1.236803e-02	ci right 1.465340e-02	k: 539	n:40000
TARBP2   40000 perm   8 sec   (4875 perm/sec)   p_kst 1.347500e-02   p_cons 4.655000e-02   p_joint 6.000000e-03

Joint ci ratio: 2.718916e-01	ci left: 3.577498e-03	ci right 4.721253e-03	k: 206	n:50000
Cons ci ratio: 7.943741e-02	ci left: 4.459224e-02	ci right 4.830065e-02	k: 2321	n:50000
KS ci ratio: 1.478715e-01	ci left: 1.283429e-02	ci right 1.490272e-02	k: 692	n:50000
TARBP2   50000 perm   11 sec   (4750 perm/sec)   p_kst 1.384000e-02   p_cons 4.642000e-02   p_joint 4.120000e-03

Joint ci ratio: 1.231737e-01	ci left: 1.557661e-02	ci right 1.763720e-02	k: 995	n:60000
Cons ci ratio: 7.301777e-02	ci left: 4.415732e-02	ci right 4.752012e-02	k: 2749	n:60000
KS ci ratio: 1.351197e-01	ci left: 1.289789e-02	ci right 1.478290e-02	k: 829	n:60000
TARBP2   60000 perm   13 sec   (4622 perm/sec)   p_kst 1.381667e-02   p_cons 4.581667e-02   p_joint 1.658333e-02

Joint ci ratio: 1.232595e-01	ci left: 1.336427e-02	ci right 1.513348e-02	k: 996	n:70000
Cons ci ratio: 6.793867e-02	ci left: 4.385548e-02	ci right 4.695377e-02	k: 3177	n:70000
KS ci ratio: 1.253156e-01	ci left: 1.292115e-02	ci right 1.466235e-02	k: 964	n:70000
TARBP2   70000 perm   15 sec   (4531 perm/sec)   p_kst 1.377143e-02   p_cons 4.538571e-02   p_joint 1.422857e-02

Joint ci ratio: 1.348650e-01	ci left: 9.744804e-03	ci right 1.116603e-02	k: 835	n:80000
Cons ci ratio: 6.351423e-02	ci left: 4.400460e-02	ci right 4.690348e-02	k: 3635	n:80000
KS ci ratio: 1.182514e-01	ci left: 1.274815e-02	ci right 1.436241e-02	k: 1083	n:80000
TARBP2   80000 perm   18 sec   (4439 perm/sec)   p_kst 1.353750e-02   p_cons 4.543750e-02   p_joint 1.043750e-02

Joint ci ratio: 2.106397e-01	ci left: 3.429593e-03	ci right 4.247343e-03	k: 344	n:90000
Cons ci ratio: 6.369118e-02	ci left: 3.910103e-02	ci right 4.168425e-02	k: 3634	n:90000
KS ci ratio: 1.114191e-01	ci left: 1.281023e-02	ci right 1.433247e-02	k: 1220	n:90000
TARBP2   90000 perm   21 sec   (4353 perm/sec)   p_kst 1.355556e-02   p_cons 4.037778e-02   p_joint 3.822222e-03

Joint ci ratio: 1.996562e-01	ci left: 3.456615e-03	ci right 4.232600e-03	k: 383	n:100000
Cons ci ratio: 6.064130e-02	ci left: 3.889236e-02	ci right 4.133441e-02	k: 4010	n:100000
KS ci ratio: 1.050235e-01	ci left: 1.301789e-02	ci right 1.447052e-02	k: 1373	n:100000
TARBP2   100000 perm   23 sec   (4269 perm/sec)   p_kst 1.373000e-02   p_cons 4.010000e-02   p_joint 3.830000e-03

Joint ci ratio: 1.909100e-01	ci left: 3.453654e-03	ci right 4.191069e-03	k: 419	n:110000
Cons ci ratio: 5.746801e-02	ci left: 3.941437e-02	ci right 4.175538e-02	k: 4463	n:110000
KS ci ratio: 1.000488e-01	ci left: 1.307456e-02	ci right 1.446034e-02	k: 1513	n:110000
TARBP2   110000 perm   26 sec   (4192 perm/sec)   p_kst 1.375455e-02   p_cons 4.057273e-02   p_joint 3.809091e-03

Joint ci ratio: 1.830196e-01	ci left: 3.459756e-03	ci right 4.164557e-03	k: 456	n:120000
Cons ci ratio: 5.485038e-02	ci left: 3.970410e-02	ci right 4.195149e-02	k: 4898	n:120000
KS ci ratio: 9.560286e-02	ci left: 1.315569e-02	ci right 1.448463e-02	k: 1657	n:120000
TARBP2   120000 perm   29 sec   (4116 perm/sec)   p_kst 1.380833e-02   p_cons 4.081667e-02   p_joint 3.800000e-03

Joint ci ratio: 1.350576e-01	ci left: 6.003444e-03	ci right 6.880328e-03	k: 836	n:130000
Cons ci ratio: 5.271538e-02	ci left: 3.972343e-02	ci right 4.188173e-02	k: 5303	n:130000
KS ci ratio: 9.167562e-02	ci left: 1.323300e-02	ci right 1.451190e-02	k: 1802	n:130000
TARBP2   130000 perm   32 sec   (4044 perm/sec)   p_kst 1.386154e-02   p_cons 4.079231e-02   p_joint 6.430769e-03

Joint ci ratio: 1.621506e-01	ci left: 3.819985e-03	ci right 4.500804e-03	k: 581	n:140000
Cons ci ratio: 5.079783e-02	ci left: 3.976263e-02	ci right 4.184216e-02	k: 5711	n:140000
KS ci ratio: 8.863508e-02	ci left: 1.316748e-02	ci right 1.439564e-02	k: 1928	n:140000
TARBP2   140000 perm   35 sec   (3973 perm/sec)   p_kst 1.377143e-02   p_cons 4.079286e-02   p_joint 4.150000e-03

Joint ci ratio: 1.565983e-01	ci left: 3.834156e-03	ci right 4.491904e-03	k: 623	n:150000
Cons ci ratio: 4.910885e-02	ci left: 3.974513e-02	ci right 4.175267e-02	k: 6111	n:150000
KS ci ratio: 8.579365e-02	ci left: 1.313740e-02	ci right 1.432151e-02	k: 2058	n:150000
TARBP2   150000 perm   38 sec   (3909 perm/sec)   p_kst 1.372000e-02   p_cons 4.074000e-02   p_joint 4.153333e-03

Joint ci ratio: 1.646237e-01	ci left: 3.240500e-03	ci right 3.827717e-03	k: 564	n:160000
Cons ci ratio: 4.761216e-02	ci left: 3.967522e-02	ci right 4.161647e-02	k: 6502	n:160000
KS ci ratio: 8.280725e-02	ci left: 1.324020e-02	ci right 1.439002e-02	k: 2209	n:160000
TARBP2   160000 perm   42 sec   (3846 perm/sec)   p_kst 1.380625e-02   p_cons 4.063750e-02   p_joint 3.525000e-03

Joint ci ratio: 1.345161e-01	ci left: 4.636120e-03	ci right 5.310344e-03	k: 844	n:170000
Cons ci ratio: 4.612604e-02	ci left: 3.981215e-02	ci right 4.169767e-02	k: 6927	n:170000
KS ci ratio: 7.606464e-02	ci left: 1.479690e-02	ci right 1.597266e-02	k: 2614	n:170000
TARBP2   170000 perm   45 sec   (3779 perm/sec)   p_kst 1.537647e-02   p_cons 4.074706e-02   p_joint 4.964706e-03

Joint ci ratio: 1.309253e-01	ci left: 4.630999e-03	ci right 5.285102e-03	k: 891	n:180000
Cons ci ratio: 4.493042e-02	ci left: 3.965991e-02	ci right 4.148826e-02	k: 7302	n:180000
KS ci ratio: 7.395986e-02	ci left: 1.479800e-02	ci right 1.593991e-02	k: 2765	n:180000
TARBP2   180000 perm   49 sec   (3711 perm/sec)   p_kst 1.536111e-02   p_cons 4.056667e-02   p_joint 4.950000e-03

Joint ci ratio: 1.254766e-01	ci left: 4.789745e-03	ci right 5.436022e-03	k: 970	n:190000
Cons ci ratio: 4.371351e-02	ci left: 3.971695e-02	ci right 4.149710e-02	k: 7714	n:190000
KS ci ratio: 7.187067e-02	ci left: 1.486143e-02	ci right 1.597448e-02	k: 2928	n:190000
TARBP2   190000 perm   52 sec   (3656 perm/sec)   p_kst 1.541053e-02   p_cons 4.060000e-02   p_joint 5.105263e-03

Joint ci ratio: 1.254927e-01	ci left: 4.550222e-03	ci right 5.164264e-03	k: 970	n:200000
Cons ci ratio: 4.271108e-02	ci left: 3.955115e-02	ci right 4.128221e-02	k: 8082	n:200000
KS ci ratio: 7.015677e-02	ci left: 1.483047e-02	ci right 1.591364e-02	k: 3073	n:200000
TARBP2   200000 perm   56 sec   (3593 perm/sec)   p_kst 1.536500e-02   p_cons 4.041000e-02   p_joint 4.850000e-03

Joint ci ratio: 1.226832e-01	ci left: 4.541178e-03	ci right 5.139283e-03	k: 1015	n:210000
Cons ci ratio: 4.166934e-02	ci left: 3.959485e-02	ci right 4.128453e-02	k: 8491	n:210000
KS ci ratio: 6.857073e-02	ci left: 1.479807e-02	ci right 1.585346e-02	k: 3217	n:210000
TARBP2   210000 perm   60 sec   (3529 perm/sec)   p_kst 1.531905e-02   p_cons 4.043333e-02   p_joint 4.833333e-03

Joint ci ratio: 7.661579e-02	ci left: 1.130834e-02	ci right 1.221368e-02	k: 2586	n:220000
Cons ci ratio: 3.828662e-02	ci left: 4.461038e-02	ci right 4.635617e-02	k: 10005	n:220000
KS ci ratio: 6.706734e-02	ci left: 1.477781e-02	ci right 1.580775e-02	k: 3363	n:220000
TARBP2   220000 perm   63 sec   (3474 perm/sec)   p_kst 1.528636e-02   p_cons 4.547727e-02   p_joint 1.175455e-02

Outputting figure to mutsig2_images.part000000000171/TARBP2.3_1137_220000_0.015286_0.045477_0.011755.png
                gene_name: TARBP2
               theta_stop: 0.077 
                    nperm: 220000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.045 
      ci_cons_bounds_left: 0.045 
     ci_cons_bounds_right: 0.046 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 58 percent done.
TARSL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.717009e-02	ci left: 1.971244e-01	ci right 2.130478e-01	k: 2050	n:10000
Cons ci ratio: 2.292136e-02	ci left: 7.365388e-01	ci right 7.537181e-01	k: 7452	n:10000
KS ci ratio: 1.251018e-01	ci left: 8.378084e-02	ci right 9.505967e-02	k: 893	n:10000
TARSL2   10000 perm   2 sec   (5254 perm/sec)   p_kst 8.930000e-02   p_cons 7.452000e-01   p_joint 2.050000e-01

Joint ci ratio: 7.734954e-02	ci left: 1.093810e-01	ci right 1.182316e-01	k: 2275	n:20000
Cons ci ratio: 1.662211e-02	ci left: 7.293283e-01	ci right 7.416032e-01	k: 14710	n:20000
KS ci ratio: 8.870753e-02	ci left: 8.499069e-02	ci right 9.292928e-02	k: 1778	n:20000
TARSL2   20000 perm   4 sec   (4708 perm/sec)   p_kst 8.890000e-02   p_cons 7.355000e-01   p_joint 1.137500e-01

Outputting figure to mutsig2_images.part000000000171/TARSL2.3_2485_20000_0.0889_0.7355_0.11375.png
                gene_name: TARSL2
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 59 percent done.
TAS2R13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.299974e-02	ci left: 2.702248e-01	ci right 2.879041e-01	k: 2790	n:10000
Cons ci ratio: 3.201653e-02	ci left: 5.901194e-01	ci right 6.094224e-01	k: 5998	n:10000
KS ci ratio: 7.566438e-02	ci left: 2.035310e-01	ci right 2.196374e-01	k: 2115	n:10000
TAS2R13   10000 perm   2 sec   (6185 perm/sec)   p_kst 2.115000e-01   p_cons 5.998000e-01   p_joint 2.790000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R13.3_916_10000_0.2115_0.5998_0.279.png
                gene_name: TAS2R13
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 61 percent done.
TAS2R16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.086757e-02	ci left: 3.630124e-01	ci right 3.820619e-01	k: 3725	n:10000
Cons ci ratio: 1.819289e-02	ci left: 8.151724e-01	ci right 8.302391e-01	k: 8228	n:10000
KS ci ratio: 1.181211e-01	ci left: 9.331107e-02	ci right 1.051236e-01	k: 991	n:10000
TAS2R16   10000 perm   2 sec   (6543 perm/sec)   p_kst 9.910000e-02   p_cons 8.228000e-01   p_joint 3.725000e-01

Joint ci ratio: 5.082399e-02	ci left: 2.233895e-01	ci right 2.350893e-01	k: 4584	n:20000
Cons ci ratio: 1.348391e-02	ci left: 8.031286e-01	ci right 8.140815e-01	k: 16173	n:20000
KS ci ratio: 8.513080e-02	ci left: 9.175502e-02	ci right 9.996291e-02	k: 1916	n:20000
TAS2R16   20000 perm   4 sec   (5674 perm/sec)   p_kst 9.580000e-02   p_cons 8.086500e-01   p_joint 2.292000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R16.3_880_20000_0.0958_0.80865_0.2292.png
                gene_name: TAS2R16
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.100 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 62 percent done.
TAS2R38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.492718e-02	ci left: 8.667238e-01	ci right 8.798579e-01	k: 8734	n:10000
Cons ci ratio: 4.804081e-02	ci left: 3.899802e-01	ci right 4.092783e-01	k: 3996	n:10000
KS ci ratio: 1.456751e-02	ci left: 8.721407e-01	ci right 8.850379e-01	k: 8787	n:10000
TAS2R38   10000 perm   1 sec   (6911 perm/sec)   p_kst 8.787000e-01   p_cons 3.996000e-01   p_joint 8.734000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R38.3_1006_10000_0.8787_0.3996_0.8734.png
                gene_name: TAS2R38
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 64 percent done.
TAS2R39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.686016e-02	ci left: 4.019315e-01	ci right 4.213200e-01	k: 4116	n:10000
Cons ci ratio: 1.458116e-02	ci left: 8.719362e-01	ci right 8.848425e-01	k: 8785	n:10000
KS ci ratio: 7.140060e-02	ci left: 2.232622e-01	ci right 2.398945e-01	k: 2315	n:10000
TAS2R39   10000 perm   2 sec   (6231 perm/sec)   p_kst 2.315000e-01   p_cons 8.785000e-01   p_joint 4.116000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R39.3_1021_10000_0.2315_0.8785_0.4116.png
                gene_name: TAS2R39
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 65 percent done.
TAS2R9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.696130e-02	ci left: 5.194597e-01	ci right 5.391232e-01	k: 5293	n:10000
Cons ci ratio: 1.924495e-02	ci left: 7.979081e-01	ci right 8.135134e-01	k: 8058	n:10000
KS ci ratio: 4.856532e-02	ci left: 3.848032e-01	ci right 4.040584e-01	k: 3944	n:10000
TAS2R9   10000 perm   2 sec   (6230 perm/sec)   p_kst 3.944000e-01   p_cons 8.058000e-01   p_joint 5.293000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R9.3_943_10000_0.3944_0.8058_0.5293.png
                gene_name: TAS2R9
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 67 percent done.
TATDN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.152427e-01	ci left: 2.863733e-02	ci right 3.563870e-02	k: 320	n:10000
Cons ci ratio: 2.067437e-01	ci left: 3.110398e-02	ci right 3.837033e-02	k: 346	n:10000
KS ci ratio: 7.977151e-02	ci left: 1.866835e-01	ci right 2.022949e-01	k: 1944	n:10000
TATDN1   10000 perm   2 sec   (6105 perm/sec)   p_kst 1.944000e-01   p_cons 3.460000e-02   p_joint 3.200000e-02

Joint ci ratio: 1.752676e-01	ci left: 2.225822e-02	ci right 2.658156e-02	k: 487	n:20000
Cons ci ratio: 1.531921e-01	ci left: 2.926703e-02	ci right 3.417036e-02	k: 633	n:20000
KS ci ratio: 5.612130e-02	ci left: 1.905673e-01	ci right 2.016211e-01	k: 3921	n:20000
TATDN1   20000 perm   4 sec   (5380 perm/sec)   p_kst 1.960500e-01   p_cons 3.165000e-02   p_joint 2.435000e-02

Joint ci ratio: 1.444266e-01	ci left: 2.223335e-02	ci right 2.572634e-02	k: 718	n:30000
Cons ci ratio: 1.263916e-01	ci left: 2.909993e-02	ci right 3.305824e-02	k: 931	n:30000
KS ci ratio: 4.569747e-02	ci left: 1.924461e-01	ci right 2.014794e-01	k: 5908	n:30000
TATDN1   30000 perm   6 sec   (5096 perm/sec)   p_kst 1.969333e-01   p_cons 3.103333e-02   p_joint 2.393333e-02

Joint ci ratio: 1.066001e-01	ci left: 3.095424e-02	ci right 3.446403e-02	k: 1307	n:40000
Cons ci ratio: 1.082803e-01	ci left: 3.000463e-02	ci right 3.346379e-02	k: 1268	n:40000
KS ci ratio: 3.962118e-02	ci left: 1.926901e-01	ci right 2.005040e-01	k: 7863	n:40000
TATDN1   40000 perm   8 sec   (4894 perm/sec)   p_kst 1.965750e-01   p_cons 3.170000e-02   p_joint 3.267500e-02

Joint ci ratio: 1.044061e-01	ci left: 2.598660e-02	ci right 2.886862e-02	k: 1370	n:50000
Cons ci ratio: 9.669967e-02	ci left: 3.027922e-02	ci right 3.337545e-02	k: 1590	n:50000
KS ci ratio: 3.473817e-02	ci left: 1.994419e-01	ci right 2.065126e-01	k: 10148	n:50000
TATDN1   50000 perm   11 sec   (4754 perm/sec)   p_kst 2.029600e-01   p_cons 3.180000e-02   p_joint 2.740000e-02

Joint ci ratio: 9.546468e-02	ci left: 2.602695e-02	ci right 2.865237e-02	k: 1639	n:60000
Cons ci ratio: 8.847088e-02	ci left: 3.027987e-02	ci right 3.309900e-02	k: 1900	n:60000
KS ci ratio: 3.172751e-02	ci left: 1.995888e-01	ci right 2.060400e-01	k: 12168	n:60000
TATDN1   60000 perm   13 sec   (4614 perm/sec)   p_kst 2.028000e-01   p_cons 3.166667e-02   p_joint 2.731667e-02

Outputting figure to mutsig2_images.part000000000171/TATDN1.3_942_60000_0.2028_0.031667_0.027317.png
                gene_name: TATDN1
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.029 

Current progress: 68 percent done.
TBC1D14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.510420e-01	ci left: 2.080800e-02	ci right 2.687375e-02	k: 237	n:10000
Cons ci ratio: 3.220289e-01	ci left: 1.224928e-02	ci right 1.703957e-02	k: 145	n:10000
KS ci ratio: 8.257621e-02	ci left: 1.762516e-01	ci right 1.915330e-01	k: 1838	n:10000
TBC1D14   10000 perm   2 sec   (5374 perm/sec)   p_kst 1.838000e-01   p_cons 1.450000e-02   p_joint 2.370000e-02

Joint ci ratio: 1.032693e-01	ci left: 6.371945e-02	ci right 7.070702e-02	k: 1343	n:20000
Cons ci ratio: 2.285098e-01	ci left: 1.284199e-02	ci right 1.620133e-02	k: 289	n:20000
KS ci ratio: 5.832301e-02	ci left: 1.788488e-01	ci right 1.896432e-01	k: 3684	n:20000
TBC1D14   20000 perm   4 sec   (4746 perm/sec)   p_kst 1.842000e-01   p_cons 1.445000e-02   p_joint 6.715000e-02

Joint ci ratio: 9.444866e-02	ci left: 5.172973e-02	ci right 5.689034e-02	k: 1628	n:30000
Cons ci ratio: 1.913204e-01	ci left: 1.247871e-02	ci right 1.515000e-02	k: 413	n:30000
KS ci ratio: 4.736098e-02	ci left: 1.814787e-01	ci right 1.903155e-01	k: 5576	n:30000
TBC1D14   30000 perm   7 sec   (4490 perm/sec)   p_kst 1.858667e-01   p_cons 1.376667e-02   p_joint 5.426667e-02

Joint ci ratio: 7.350813e-02	ci left: 6.392994e-02	ci right 6.883324e-02	k: 2654	n:40000
Cons ci ratio: 1.608806e-01	ci left: 1.344740e-02	ci right 1.582383e-02	k: 584	n:40000
KS ci ratio: 4.127177e-02	ci left: 1.802133e-01	ci right 1.878327e-01	k: 7360	n:40000
TBC1D14   40000 perm   9 sec   (4410 perm/sec)   p_kst 1.840000e-01   p_cons 1.460000e-02   p_joint 6.635000e-02

Joint ci ratio: 7.131756e-02	ci left: 5.494428e-02	ci right 5.902734e-02	k: 2848	n:50000
Cons ci ratio: 1.425423e-01	ci left: 1.383701e-02	ci right 1.597985e-02	k: 744	n:50000
KS ci ratio: 3.686371e-02	ci left: 1.810290e-01	ci right 1.878477e-01	k: 9221	n:50000
TBC1D14   50000 perm   12 sec   (4333 perm/sec)   p_kst 1.844200e-01   p_cons 1.488000e-02   p_joint 5.696000e-02

Joint ci ratio: 6.357773e-02	ci left: 5.768585e-02	ci right 6.149022e-02	k: 3574	n:60000
Cons ci ratio: 1.315493e-01	ci left: 1.362320e-02	ci right 1.555750e-02	k: 874	n:60000
KS ci ratio: 3.359491e-02	ci left: 1.818338e-01	ci right 1.880634e-01	k: 11096	n:60000
TBC1D14   60000 perm   14 sec   (4262 perm/sec)   p_kst 1.849333e-01   p_cons 1.456667e-02   p_joint 5.956667e-02

Joint ci ratio: 5.433271e-02	ci left: 6.733064e-02	ci right 7.110516e-02	k: 4844	n:70000
Cons ci ratio: 1.219022e-01	ci left: 1.366905e-02	ci right 1.545724e-02	k: 1018	n:70000
KS ci ratio: 3.098181e-02	ci left: 1.832370e-01	ci right 1.890176e-01	k: 13028	n:70000
TBC1D14   70000 perm   17 sec   (4187 perm/sec)   p_kst 1.861143e-01   p_cons 1.454286e-02   p_joint 6.920000e-02

Joint ci ratio: 3.972691e-02	ci left: 1.063404e-01	ci right 1.106630e-01	k: 8679	n:80000
Cons ci ratio: 1.146588e-01	ci left: 1.357372e-02	ci right 1.523677e-02	k: 1151	n:80000
KS ci ratio: 2.892749e-02	ci left: 1.839801e-01	ci right 1.893927e-01	k: 14934	n:80000
TBC1D14   80000 perm   19 sec   (4112 perm/sec)   p_kst 1.866750e-01   p_cons 1.438750e-02   p_joint 1.084875e-01

Joint ci ratio: 3.877047e-02	ci left: 1.000190e-01	ci right 1.039845e-01	k: 9179	n:90000
Cons ci ratio: 1.082286e-01	ci left: 1.358855e-02	ci right 1.515409e-02	k: 1292	n:90000
KS ci ratio: 2.733000e-02	ci left: 1.835067e-01	ci right 1.886025e-01	k: 16744	n:90000
TBC1D14   90000 perm   22 sec   (4044 perm/sec)   p_kst 1.860444e-01   p_cons 1.435556e-02   p_joint 1.019889e-01

Joint ci ratio: 3.697905e-02	ci left: 9.914889e-02	ci right 1.028943e-01	k: 10101	n:100000
Cons ci ratio: 1.026627e-01	ci left: 1.363174e-02	ci right 1.511662e-02	k: 1436	n:100000
KS ci ratio: 2.588527e-02	ci left: 1.841298e-01	ci right 1.889684e-01	k: 18654	n:100000
TBC1D14   100000 perm   25 sec   (3979 perm/sec)   p_kst 1.865400e-01   p_cons 1.436000e-02   p_joint 1.010100e-01

Joint ci ratio: 3.665822e-02	ci left: 9.243488e-02	ci right 9.589564e-02	k: 10357	n:110000
Cons ci ratio: 9.796998e-02	ci left: 1.364216e-02	ci right 1.505634e-02	k: 1577	n:110000
KS ci ratio: 2.472101e-02	ci left: 1.837496e-01	ci right 1.883579e-01	k: 20465	n:110000
TBC1D14   110000 perm   28 sec   (3911 perm/sec)   p_kst 1.860455e-01   p_cons 1.433636e-02   p_joint 9.415455e-02

Outputting figure to mutsig2_images.part000000000171/TBC1D14.3_2141_110000_0.18605_0.014336_0.094155.png
                gene_name: TBC1D14
               theta_stop: 0.098 
                    nperm: 110000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.014 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.096 

Current progress: 70 percent done.
TAF1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.418404e-02	ci left: 7.154271e-01	ci right 7.330421e-01	k: 7243	n:10000
Cons ci ratio: 4.555967e-02	ci left: 4.155831e-01	ci right 4.350604e-01	k: 4253	n:10000
KS ci ratio: 4.861618e-02	ci left: 3.843054e-01	ci right 4.035564e-01	k: 3939	n:10000
TAF1A   10000 perm   2 sec   (6318 perm/sec)   p_kst 3.939000e-01   p_cons 4.253000e-01   p_joint 7.243000e-01

Outputting figure to mutsig2_images.part000000000171/TAF1A.2_1393_10000_0.3939_0.4253_0.7243.png
                gene_name: TAF1A
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 71 percent done.
TAF5L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.100929e-02	ci left: 3.617196e-01	ci right 3.807555e-01	k: 3712	n:10000
Cons ci ratio: 1.254161e-02	ci left: 9.013439e-01	ci right 9.128177e-01	k: 9072	n:10000
KS ci ratio: 1.181872e-01	ci left: 9.321372e-02	ci right 1.050210e-01	k: 990	n:10000
TAF5L   10000 perm   2 sec   (5577 perm/sec)   p_kst 9.900000e-02   p_cons 9.072000e-01   p_joint 3.712000e-01

Joint ci ratio: 3.571992e-02	ci left: 3.690811e-01	ci right 3.825550e-01	k: 7516	n:20000
Cons ci ratio: 8.900952e-03	ci left: 9.024318e-01	ci right 9.105495e-01	k: 18131	n:20000
KS ci ratio: 8.399665e-02	ci left: 9.406032e-02	ci right 1.023569e-01	k: 1963	n:20000
TAF5L   20000 perm   4 sec   (4871 perm/sec)   p_kst 9.815000e-02   p_cons 9.065500e-01   p_joint 3.758000e-01

Outputting figure to mutsig2_images.part000000000171/TAF5L.2_1792_20000_0.09815_0.90655_0.3758.png
                gene_name: TAF5L
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 73 percent done.
TAF6L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.732256e-02	ci left: 6.637061e-01	ci right 6.821931e-01	k: 6730	n:10000
Cons ci ratio: 4.976527e-02	ci left: 3.732585e-01	ci right 3.924098e-01	k: 3828	n:10000
KS ci ratio: 4.871812e-02	ci left: 3.833100e-01	ci right 4.025524e-01	k: 3929	n:10000
TAF6L   10000 perm   2 sec   (5434 perm/sec)   p_kst 3.929000e-01   p_cons 3.828000e-01   p_joint 6.730000e-01

Outputting figure to mutsig2_images.part000000000171/TAF6L.2_1909_10000_0.3929_0.3828_0.673.png
                gene_name: TAF6L
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 74 percent done.
TAF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.395993e-02	ci left: 5.614305e-01	ci right 5.809280e-01	k: 5712	n:10000
Cons ci ratio: 2.050926e-02	ci left: 7.769169e-01	ci right 7.931167e-01	k: 7851	n:10000
KS ci ratio: 5.921521e-02	ci left: 2.955875e-01	ci right 3.137265e-01	k: 3046	n:10000
TAF7   10000 perm   2 sec   (6604 perm/sec)   p_kst 3.046000e-01   p_cons 7.851000e-01   p_joint 5.712000e-01

Outputting figure to mutsig2_images.part000000000171/TAF7.2_1054_10000_0.3046_0.7851_0.5712.png
                gene_name: TAF7
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 76 percent done.
TAGLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.967418e-02	ci left: 7.908060e-01	ci right 8.066196e-01	k: 7988	n:10000
Cons ci ratio: 1.908499e-02	ci left: 8.005470e-01	ci right 8.160730e-01	k: 8084	n:10000
KS ci ratio: 2.412956e-02	ci left: 7.163357e-01	ci right 7.339330e-01	k: 7252	n:10000
TAGLN2   10000 perm   1 sec   (6754 perm/sec)   p_kst 7.252000e-01   p_cons 8.084000e-01   p_joint 7.988000e-01

Outputting figure to mutsig2_images.part000000000171/TAGLN2.2_616_10000_0.7252_0.8084_0.7988.png
                gene_name: TAGLN2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 77 percent done.
TAPT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.238416e-02	ci left: 1.769402e-01	ci right 1.922440e-01	k: 1845	n:10000
Cons ci ratio: 5.996421e-02	ci left: 2.903338e-01	ci right 3.083832e-01	k: 2993	n:10000
KS ci ratio: 1.528606e-01	ci left: 5.696592e-02	ci right 6.649137e-02	k: 616	n:10000
TAPT1   10000 perm   2 sec   (5889 perm/sec)   p_kst 6.160000e-02   p_cons 2.993000e-01   p_joint 1.845000e-01

Joint ci ratio: 4.829939e-02	ci left: 2.417294e-01	ci right 2.537440e-01	k: 4954	n:20000
Cons ci ratio: 4.166011e-02	ci left: 3.004121e-01	ci right 3.132441e-01	k: 6136	n:20000
KS ci ratio: 1.093720e-01	ci left: 5.704007e-02	ci right 6.368846e-02	k: 1206	n:20000
TAPT1   20000 perm   4 sec   (5217 perm/sec)   p_kst 6.030000e-02   p_cons 3.068000e-01   p_joint 2.477000e-01

Joint ci ratio: 3.954426e-02	ci left: 2.418299e-01	ci right 2.516192e-01	k: 7401	n:30000
Cons ci ratio: 3.402736e-02	ci left: 3.014511e-01	ci right 3.119197e-01	k: 9200	n:30000
KS ci ratio: 8.908016e-02	ci left: 5.792607e-02	ci right 6.335940e-02	k: 1818	n:30000
TAPT1   30000 perm   6 sec   (4929 perm/sec)   p_kst 6.060000e-02   p_cons 3.066667e-01   p_joint 2.467000e-01

Outputting figure to mutsig2_images.part000000000171/TAPT1.2_1760_30000_0.0606_0.30667_0.2467.png
                gene_name: TAPT1
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 79 percent done.
TARP
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 80 percent done.
TAS2R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.773010e-01	ci left: 4.245560e-02	ci right 5.081107e-02	k: 465	n:10000
Cons ci ratio: 1.171276e-02	ci left: 9.125529e-01	ci right 9.234021e-01	k: 9181	n:10000
KS ci ratio: 6.264461e-01	ci left: 2.690467e-03	ci right 5.212103e-03	k: 38	n:10000
TAS2R1   10000 perm   1 sec   (6846 perm/sec)   p_kst 3.800000e-03   p_cons 9.181000e-01   p_joint 4.650000e-02

Joint ci ratio: 1.073055e-01	ci left: 5.918404e-02	ci right 6.594382e-02	k: 1250	n:20000
Cons ci ratio: 8.338140e-03	ci left: 9.131417e-01	ci right 9.208366e-01	k: 18341	n:20000
KS ci ratio: 4.487885e-01	ci left: 2.950721e-03	ci right 4.698422e-03	k: 75	n:20000
TAS2R1   20000 perm   3 sec   (5898 perm/sec)   p_kst 3.750000e-03   p_cons 9.170500e-01   p_joint 6.250000e-02

Joint ci ratio: 1.123935e-01	ci left: 3.677252e-02	ci right 4.118400e-02	k: 1168	n:30000
Cons ci ratio: 6.753044e-03	ci left: 9.151093e-01	ci right 9.213428e-01	k: 27548	n:30000
KS ci ratio: 3.632525e-01	ci left: 3.165816e-03	ci right 4.599568e-03	k: 115	n:30000
TAS2R1   30000 perm   5 sec   (5597 perm/sec)   p_kst 3.833333e-03   p_cons 9.182667e-01   p_joint 3.893333e-02

Joint ci ratio: 8.463467e-02	ci left: 4.874173e-02	ci right 5.307376e-02	k: 2035	n:40000
Cons ci ratio: 5.906983e-03	ci left: 9.139998e-01	ci right 9.194395e-01	k: 36670	n:40000
KS ci ratio: 3.102539e-01	ci left: 3.359053e-03	ci right 4.614644e-03	k: 158	n:40000
TAS2R1   40000 perm   7 sec   (5368 perm/sec)   p_kst 3.950000e-03   p_cons 9.167500e-01   p_joint 5.087500e-02

Joint ci ratio: 7.807195e-02	ci left: 4.612295e-02	ci right 4.988975e-02	k: 2399	n:50000
Cons ci ratio: 5.268367e-03	ci left: 9.147299e-01	ci right 9.195815e-01	k: 45859	n:50000
KS ci ratio: 2.861194e-01	ci left: 3.205375e-03	ci right 4.293492e-03	k: 186	n:50000
TAS2R1   50000 perm   10 sec   (5201 perm/sec)   p_kst 3.720000e-03   p_cons 9.171800e-01   p_joint 4.798000e-02

Joint ci ratio: 7.447705e-02	ci left: 4.248727e-02	ci right 4.579034e-02	k: 2647	n:60000
Cons ci ratio: 4.789625e-03	ci left: 9.155736e-01	ci right 9.199859e-01	k: 55068	n:60000
KS ci ratio: 2.608407e-01	ci left: 3.261149e-03	ci right 4.254469e-03	k: 224	n:60000
TAS2R1   60000 perm   12 sec   (5065 perm/sec)   p_kst 3.733333e-03   p_cons 9.178000e-01   p_joint 4.411667e-02

Joint ci ratio: 6.910859e-02	ci left: 4.242220e-02	ci right 4.547289e-02	k: 3075	n:70000
Cons ci ratio: 4.444775e-03	ci left: 9.153796e-01	ci right 9.194714e-01	k: 64221	n:70000
KS ci ratio: 2.398918e-01	ci left: 3.344310e-03	ci right 4.269000e-03	k: 265	n:70000
TAS2R1   70000 perm   14 sec   (4937 perm/sec)   p_kst 3.785714e-03   p_cons 9.174429e-01   p_joint 4.392857e-02

Joint ci ratio: 6.848897e-02	ci left: 3.798861e-02	ci right 4.069493e-02	k: 3146	n:80000
Cons ci ratio: 4.154049e-03	ci left: 9.156479e-01	ci right 9.194718e-01	k: 73406	n:80000
KS ci ratio: 2.270374e-01	ci left: 3.291109e-03	ci right 4.145503e-03	k: 296	n:80000
TAS2R1   80000 perm   17 sec   (4808 perm/sec)   p_kst 3.700000e-03   p_cons 9.175750e-01   p_joint 3.932500e-02

Joint ci ratio: 5.961134e-02	ci left: 4.447619e-02	ci right 4.721985e-02	k: 4125	n:90000
Cons ci ratio: 3.922993e-03	ci left: 9.155040e-01	ci right 9.191135e-01	k: 82559	n:90000
KS ci ratio: 2.137723e-01	ci left: 3.324367e-03	ci right 4.130363e-03	k: 334	n:90000
TAS2R1   90000 perm   19 sec   (4706 perm/sec)   p_kst 3.711111e-03   p_cons 9.173222e-01   p_joint 4.583333e-02

Joint ci ratio: 6.435050e-02	ci left: 3.462742e-02	ci right 3.693961e-02	k: 3577	n:100000
Cons ci ratio: 3.724905e-03	ci left: 9.154648e-01	ci right 9.188910e-01	k: 91719	n:100000
KS ci ratio: 2.031374e-01	ci left: 3.333149e-03	ci right 4.096083e-03	k: 370	n:100000
TAS2R1   100000 perm   22 sec   (4604 perm/sec)   p_kst 3.700000e-03   p_cons 9.171900e-01   p_joint 3.577000e-02

Joint ci ratio: 6.121723e-02	ci left: 3.483516e-02	ci right 3.704394e-02	k: 3952	n:110000
Cons ci ratio: 3.535346e-03	ci left: 9.162438e-01	ci right 9.194978e-01	k: 100967	n:110000
KS ci ratio: 1.953974e-01	ci left: 3.289251e-03	ci right 4.010036e-03	k: 400	n:110000
TAS2R1   110000 perm   24 sec   (4500 perm/sec)   p_kst 3.636364e-03   p_cons 9.178818e-01   p_joint 3.592727e-02

Joint ci ratio: 5.083271e-02	ci left: 4.601516e-02	ci right 4.842345e-02	k: 5665	n:120000
Cons ci ratio: 3.385166e-03	ci left: 9.162989e-01	ci right 9.194142e-01	k: 110144	n:120000
KS ci ratio: 1.848558e-01	ci left: 3.388198e-03	ci right 4.086122e-03	k: 447	n:120000
TAS2R1   120000 perm   27 sec   (4396 perm/sec)   p_kst 3.725000e-03   p_cons 9.178667e-01   p_joint 4.720833e-02

Joint ci ratio: 4.885173e-02	ci left: 4.603827e-02	ci right 4.835121e-02	k: 6134	n:130000
Cons ci ratio: 3.258765e-03	ci left: 9.160611e-01	ci right 9.190587e-01	k: 119284	n:130000
KS ci ratio: 1.789660e-01	ci left: 3.347824e-03	ci right 4.013079e-03	k: 477	n:130000
TAS2R1   130000 perm   30 sec   (4309 perm/sec)   p_kst 3.669231e-03   p_cons 9.175692e-01   p_joint 4.718462e-02

Joint ci ratio: 5.413005e-02	ci left: 3.512891e-02	ci right 3.709036e-02	k: 5054	n:140000
Cons ci ratio: 3.137799e-03	ci left: 9.162338e-01	ci right 9.191203e-01	k: 128476	n:140000
KS ci ratio: 1.724172e-01	ci left: 3.361361e-03	ci right 4.002322e-03	k: 514	n:140000
TAS2R1   140000 perm   33 sec   (4223 perm/sec)   p_kst 3.671429e-03   p_cons 9.176857e-01   p_joint 3.610000e-02

Joint ci ratio: 4.394865e-02	ci left: 4.925868e-02	ci right 5.147874e-02	k: 7554	n:150000
Cons ci ratio: 3.028969e-03	ci left: 9.164053e-01	ci right 9.191919e-01	k: 137671	n:150000
KS ci ratio: 1.643125e-01	ci left: 3.469352e-03	ci right 4.096736e-03	k: 566	n:150000
TAS2R1   150000 perm   36 sec   (4133 perm/sec)   p_kst 3.773333e-03   p_cons 9.178067e-01   p_joint 5.036000e-02

Joint ci ratio: 4.732089e-02	ci left: 4.015100e-02	ci right 4.210317e-02	k: 6579	n:160000
Cons ci ratio: 2.934612e-03	ci left: 9.163553e-01	ci right 9.190546e-01	k: 146834	n:160000
KS ci ratio: 1.597325e-01	ci left: 3.450403e-03	ci right 4.055298e-03	k: 599	n:160000
TAS2R1   160000 perm   39 sec   (4059 perm/sec)   p_kst 3.743750e-03   p_cons 9.177125e-01   p_joint 4.111875e-02

Joint ci ratio: 4.587466e-02	ci left: 4.023683e-02	ci right 4.213180e-02	k: 7000	n:170000
Cons ci ratio: 2.846114e-03	ci left: 9.164428e-01	ci right 9.190606e-01	k: 156019	n:170000
KS ci ratio: 1.556387e-01	ci left: 3.428243e-03	ci right 4.012412e-03	k: 631	n:170000
TAS2R1   170000 perm   43 sec   (3993 perm/sec)   p_kst 3.711765e-03   p_cons 9.177588e-01   p_joint 4.117647e-02

Joint ci ratio: 4.453151e-02	ci left: 4.035240e-02	ci right 4.219575e-02	k: 7428	n:180000
Cons ci ratio: 2.758953e-03	ci left: 9.168629e-01	ci right 9.194014e-01	k: 165265	n:180000
KS ci ratio: 1.509343e-01	ci left: 3.451488e-03	ci right 4.020235e-03	k: 671	n:180000
TAS2R1   180000 perm   46 sec   (3919 perm/sec)   p_kst 3.727778e-03   p_cons 9.181389e-01   p_joint 4.126667e-02

Joint ci ratio: 4.103595e-02	ci left: 4.488516e-02	ci right 4.677083e-02	k: 8706	n:190000
Cons ci ratio: 2.684084e-03	ci left: 9.169693e-01	ci right 9.194390e-01	k: 174460	n:190000
KS ci ratio: 1.469434e-01	ci left: 3.457311e-03	ci right 4.010632e-03	k: 708	n:190000
TAS2R1   190000 perm   49 sec   (3857 perm/sec)   p_kst 3.726316e-03   p_cons 9.182105e-01   p_joint 4.582105e-02

Joint ci ratio: 4.029794e-02	ci left: 4.426393e-02	ci right 4.608928e-02	k: 9034	n:200000
Cons ci ratio: 2.614996e-03	ci left: 9.170658e-01	ci right 9.194720e-01	k: 183655	n:200000
KS ci ratio: 1.441284e-01	ci left: 3.419343e-03	ci right 3.955201e-03	k: 736	n:200000
TAS2R1   200000 perm   53 sec   (3797 perm/sec)   p_kst 3.680000e-03   p_cons 9.182750e-01   p_joint 4.517000e-02

Joint ci ratio: 3.917296e-02	ci left: 4.462202e-02	ci right 4.640960e-02	k: 9557	n:210000
Cons ci ratio: 2.551952e-03	ci left: 9.170964e-01	ci right 9.194444e-01	k: 192838	n:210000
KS ci ratio: 1.401875e-01	ci left: 3.449408e-03	ci right 3.973962e-03	k: 778	n:210000
TAS2R1   210000 perm   56 sec   (3738 perm/sec)   p_kst 3.704762e-03   p_cons 9.182762e-01   p_joint 4.550952e-02

Joint ci ratio: 4.160741e-02	ci left: 3.797433e-02	ci right 3.959239e-02	k: 8531	n:220000
Cons ci ratio: 2.493183e-03	ci left: 9.171293e-01	ci right 9.194233e-01	k: 202022	n:220000
KS ci ratio: 1.368882e-01	ci left: 3.459358e-03	ci right 3.972036e-03	k: 816	n:220000
TAS2R1   220000 perm   60 sec   (3674 perm/sec)   p_kst 3.709091e-03   p_cons 9.182818e-01   p_joint 3.877727e-02

Joint ci ratio: 3.962538e-02	ci left: 4.000375e-02	ci right 4.162524e-02	k: 9386	n:230000
Cons ci ratio: 2.437377e-03	ci left: 9.172169e-01	ci right 9.194595e-01	k: 211219	n:230000
KS ci ratio: 1.336547e-01	ci left: 3.476981e-03	ci right 3.979131e-03	k: 856	n:230000
TAS2R1   230000 perm   64 sec   (3621 perm/sec)   p_kst 3.721739e-03   p_cons 9.183435e-01   p_joint 4.080870e-02

Joint ci ratio: 3.874600e-02	ci left: 4.011108e-02	ci right 4.170003e-02	k: 9816	n:240000
Cons ci ratio: 2.383764e-03	ci left: 9.173857e-01	ci right 9.195792e-01	k: 220437	n:240000
KS ci ratio: 1.312286e-01	ci left: 3.461021e-03	ci right 3.951085e-03	k: 888	n:240000
TAS2R1   240000 perm   67 sec   (3567 perm/sec)   p_kst 3.700000e-03   p_cons 9.184875e-01   p_joint 4.090000e-02

Joint ci ratio: 3.914151e-02	ci left: 3.781652e-02	ci right 3.933020e-02	k: 9642	n:250000
Cons ci ratio: 2.338649e-03	ci left: 9.172114e-01	ci right 9.193629e-01	k: 229573	n:250000
KS ci ratio: 1.290003e-01	ci left: 3.442542e-03	ci right 3.921078e-03	k: 919	n:250000
TAS2R1   250000 perm   71 sec   (3515 perm/sec)   p_kst 3.676000e-03   p_cons 9.182920e-01   p_joint 3.856800e-02

Joint ci ratio: 3.828961e-02	ci left: 3.800756e-02	ci right 3.949505e-02	k: 10074	n:260000
Cons ci ratio: 2.294344e-03	ci left: 9.171593e-01	ci right 9.192698e-01	k: 238737	n:260000
KS ci ratio: 1.260858e-01	ci left: 3.470247e-03	ci right 3.940922e-03	k: 962	n:260000
TAS2R1   260000 perm   75 sec   (3465 perm/sec)   p_kst 3.700000e-03   p_cons 9.182192e-01   p_joint 3.874615e-02

Joint ci ratio: 3.768924e-02	ci left: 3.779573e-02	ci right 3.925123e-02	k: 10400	n:270000
Cons ci ratio: 2.251243e-03	ci left: 9.171934e-01	ci right 9.192642e-01	k: 247923	n:270000
KS ci ratio: 1.236073e-01	ci left: 3.481654e-03	ci right 3.943914e-03	k: 1001	n:270000
TAS2R1   270000 perm   79 sec   (3417 perm/sec)   p_kst 3.707407e-03   p_cons 9.182333e-01   p_joint 3.851852e-02

Joint ci ratio: 3.682975e-02	ci left: 3.816910e-02	ci right 3.960475e-02	k: 10887	n:280000
Cons ci ratio: 2.211429e-03	ci left: 9.171608e-01	ci right 9.191948e-01	k: 257091	n:280000
KS ci ratio: 1.221559e-01	ci left: 3.440385e-03	ci right 3.891413e-03	k: 1025	n:280000
TAS2R1   280000 perm   83 sec   (3370 perm/sec)   p_kst 3.660714e-03   p_cons 9.181821e-01   p_joint 3.888214e-02

Joint ci ratio: 3.630635e-02	ci left: 3.794278e-02	ci right 3.934921e-02	k: 11206	n:290000
Cons ci ratio: 2.172059e-03	ci left: 9.172417e-01	ci right 9.192396e-01	k: 266291	n:290000
KS ci ratio: 1.205817e-01	ci left: 3.412024e-03	ci right 3.853159e-03	k: 1052	n:290000
TAS2R1   290000 perm   87 sec   (3322 perm/sec)   p_kst 3.627586e-03   p_cons 9.182448e-01   p_joint 3.864138e-02

Joint ci ratio: 3.570966e-02	ci left: 3.792667e-02	ci right 3.930893e-02	k: 11584	n:300000
Cons ci ratio: 2.133342e-03	ci left: 9.174147e-01	ci right 9.193772e-01	k: 275520	n:300000
KS ci ratio: 1.188460e-01	ci left: 3.398528e-03	ci right 3.831149e-03	k: 1083	n:300000
TAS2R1   300000 perm   92 sec   (3275 perm/sec)   p_kst 3.610000e-03   p_cons 9.184000e-01   p_joint 3.861333e-02

Joint ci ratio: 3.611998e-02	ci left: 3.594171e-02	ci right 3.726697e-02	k: 11346	n:310000
Cons ci ratio: 2.099960e-03	ci left: 9.173368e-01	ci right 9.192683e-01	k: 284675	n:310000
KS ci ratio: 1.171832e-01	ci left: 3.385944e-03	ci right 3.810515e-03	k: 1114	n:310000
TAS2R1   310000 perm   96 sec   (3230 perm/sec)   p_kst 3.593548e-03   p_cons 9.183065e-01   p_joint 3.660000e-02

Joint ci ratio: 3.554488e-02	ci left: 3.596443e-02	ci right 3.726898e-02	k: 11716	n:320000
Cons ci ratio: 2.066674e-03	ci left: 9.173676e-01	ci right 9.192686e-01	k: 293863	n:320000
KS ci ratio: 1.154872e-01	ci left: 3.380257e-03	ci right 3.797562e-03	k: 1147	n:320000
TAS2R1   320000 perm   100 sec   (3186 perm/sec)   p_kst 3.584375e-03   p_cons 9.183219e-01   p_joint 3.661250e-02

Joint ci ratio: 3.499490e-02	ci left: 3.598893e-02	ci right 3.727377e-02	k: 12087	n:330000
Cons ci ratio: 2.034265e-03	ci left: 9.174456e-01	ci right 9.193168e-01	k: 303067	n:330000
KS ci ratio: 1.133343e-01	ci left: 3.407346e-03	ci right 3.819629e-03	k: 1191	n:330000
TAS2R1   330000 perm   105 sec   (3144 perm/sec)   p_kst 3.609091e-03   p_cons 9.183848e-01   p_joint 3.662727e-02

Joint ci ratio: 3.445963e-02	ci left: 3.603255e-02	ci right 3.729889e-02	k: 12465	n:340000
Cons ci ratio: 2.000933e-03	ci left: 9.176995e-01	ci right 9.195405e-01	k: 312332	n:340000
KS ci ratio: 1.116608e-01	ci left: 3.410033e-03	ci right 3.816147e-03	k: 1227	n:340000
TAS2R1   340000 perm   110 sec   (3103 perm/sec)   p_kst 3.608824e-03   p_cons 9.186235e-01   p_joint 3.666176e-02

Joint ci ratio: 3.295540e-02	ci left: 3.821362e-02	ci right 3.949688e-02	k: 13598	n:350000
Cons ci ratio: 1.971471e-03	ci left: 9.177638e-01	ci right 9.195778e-01	k: 321536	n:350000
KS ci ratio: 1.097546e-01	ci left: 3.432061e-03	ci right 3.833370e-03	k: 1270	n:350000
TAS2R1   350000 perm   114 sec   (3064 perm/sec)   p_kst 3.628571e-03   p_cons 9.186743e-01   p_joint 3.885143e-02

Joint ci ratio: 3.350759e-02	ci left: 3.601099e-02	ci right 3.724093e-02	k: 13184	n:360000
Cons ci ratio: 1.943127e-03	ci left: 9.178360e-01	ci right 9.196239e-01	k: 330744	n:360000
KS ci ratio: 1.087347e-01	ci left: 3.401568e-03	ci right 3.795378e-03	k: 1294	n:360000
TAS2R1   360000 perm   119 sec   (3024 perm/sec)   p_kst 3.594444e-03   p_cons 9.187333e-01   p_joint 3.662222e-02

Joint ci ratio: 3.077714e-02	ci left: 4.135591e-02	ci right 4.265128e-02	k: 15540	n:370000
Cons ci ratio: 1.916214e-03	ci left: 9.178854e-01	ci right 9.196486e-01	k: 339945	n:370000
KS ci ratio: 1.073756e-01	ci left: 3.396412e-03	ci right 3.784400e-03	k: 1327	n:370000
TAS2R1   370000 perm   124 sec   (2987 perm/sec)   p_kst 3.586486e-03   p_cons 9.187703e-01   p_joint 4.200000e-02

Joint ci ratio: 3.025394e-02	ci left: 4.167007e-02	ci right 4.295271e-02	k: 16077	n:380000
Cons ci ratio: 1.890522e-03	ci left: 9.179217e-01	ci right 9.196613e-01	k: 349142	n:380000
KS ci ratio: 1.053693e-01	ci left: 3.437676e-03	ci right 3.822586e-03	k: 1378	n:380000
TAS2R1   380000 perm   129 sec   (2945 perm/sec)   p_kst 3.626316e-03   p_cons 9.187947e-01   p_joint 4.230789e-02

Joint ci ratio: 2.994046e-02	ci left: 4.147187e-02	ci right 4.273495e-02	k: 16419	n:390000
Cons ci ratio: 1.865773e-03	ci left: 9.179615e-01	ci right 9.196784e-01	k: 358341	n:390000
KS ci ratio: 1.039466e-01	ci left: 3.444417e-03	ci right 3.824555e-03	k: 1416	n:390000
TAS2R1   390000 perm   134 sec   (2909 perm/sec)   p_kst 3.630769e-03   p_cons 9.188231e-01   p_joint 4.210000e-02

Joint ci ratio: 2.993505e-02	ci left: 4.049183e-02	ci right 4.172483e-02	k: 16442	n:400000
Cons ci ratio: 1.841754e-03	ci left: 9.180171e-01	ci right 9.197119e-01	k: 367547	n:400000
KS ci ratio: 1.028999e-01	ci left: 3.428929e-03	ci right 3.803318e-03	k: 1445	n:400000
TAS2R1   400000 perm   139 sec   (2875 perm/sec)   p_kst 3.612500e-03   p_cons 9.188675e-01   p_joint 4.110500e-02

Joint ci ratio: 3.035590e-02	ci left: 3.848936e-02	ci right 3.967814e-02	k: 16023	n:410000
Cons ci ratio: 1.820929e-03	ci left: 9.178813e-01	ci right 9.195566e-01	k: 376676	n:410000
KS ci ratio: 1.014708e-01	ci left: 3.442742e-03	ci right 3.813108e-03	k: 1486	n:410000
TAS2R1   410000 perm   145 sec   (2836 perm/sec)   p_kst 3.624390e-03   p_cons 9.187220e-01   p_joint 3.908049e-02

Joint ci ratio: 2.878521e-02	ci left: 4.167907e-02	ci right 4.289868e-02	k: 17760	n:420000
Cons ci ratio: 1.798410e-03	ci left: 9.179507e-01	ci right 9.196054e-01	k: 385888	n:420000
KS ci ratio: 1.002975e-01	ci left: 3.442003e-03	ci right 3.807755e-03	k: 1521	n:420000
TAS2R1   420000 perm   150 sec   (2795 perm/sec)   p_kst 3.621429e-03   p_cons 9.187810e-01   p_joint 4.228571e-02

Joint ci ratio: 2.961099e-02	ci left: 3.858032e-02	ci right 3.974218e-02	k: 16838	n:430000
Cons ci ratio: 1.777231e-03	ci left: 9.179726e-01	ci right 9.196078e-01	k: 395081	n:430000
KS ci ratio: 9.910003e-02	ci left: 3.445858e-03	ci right 3.807393e-03	k: 1558	n:430000
TAS2R1   430000 perm   156 sec   (2758 perm/sec)   p_kst 3.623256e-03   p_cons 9.187930e-01   p_joint 3.915814e-02

Outputting figure to mutsig2_images.part000000000171/TAS2R1.2_904_430000_0.0036233_0.91879_0.039158.png
                gene_name: TAS2R1
               theta_stop: 0.099 
                    nperm: 430000 
                     p_ks: 0.0036 
        ci_ks_bounds_left: 0.0034 
       ci_ks_bounds_right: 0.0038 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.040 

Current progress: 82 percent done.
TAS2R30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.924902e-02	ci left: 4.894516e-01	ci right 5.091488e-01	k: 4993	n:10000
Cons ci ratio: 7.275060e-02	ci left: 2.167479e-01	ci right 2.332127e-01	k: 2249	n:10000
KS ci ratio: 2.502725e-02	ci left: 7.013997e-01	ci right 7.192776e-01	k: 7104	n:10000
TAS2R30   10000 perm   2 sec   (6611 perm/sec)   p_kst 7.104000e-01   p_cons 2.249000e-01   p_joint 4.993000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R30.2_964_10000_0.7104_0.2249_0.4993.png
                gene_name: TAS2R30
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 83 percent done.
TAS2R4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.532550e-02	ci left: 6.964572e-01	ci right 7.144230e-01	k: 7055	n:10000
KS ci ratio: 7.863244e-03	ci left: 9.574375e-01	ci right 9.650907e-01	k: 9614	n:10000
TAS2R4   10000 perm   1 sec   (6937 perm/sec)   p_kst 9.614000e-01   p_cons 7.055000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TAS2R4.2_904_10000_0.9614_0.7055_1.png
                gene_name: TAS2R4
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
TAS2R46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.266631e-02	ci left: 3.470060e-01	ci right 3.658777e-01	k: 3564	n:10000
Cons ci ratio: 4.719059e-02	ci left: 3.985447e-01	ci right 4.179088e-01	k: 4082	n:10000
KS ci ratio: 1.430962e-01	ci left: 6.478500e-02	ci right 7.486734e-02	k: 697	n:10000
TAS2R46   10000 perm   1 sec   (6834 perm/sec)   p_kst 6.970000e-02   p_cons 4.082000e-01   p_joint 3.564000e-01

Joint ci ratio: 2.987317e-02	ci left: 4.556708e-01	ci right 4.695401e-01	k: 9252	n:20000
Cons ci ratio: 3.330984e-02	ci left: 4.022746e-01	ci right 4.159519e-01	k: 8182	n:20000
KS ci ratio: 9.962254e-02	ci left: 6.825964e-02	ci right 7.546543e-02	k: 1436	n:20000
TAS2R46   20000 perm   4 sec   (5595 perm/sec)   p_kst 7.180000e-02   p_cons 4.091000e-01   p_joint 4.626000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R46.2_934_20000_0.0718_0.4091_0.4626.png
                gene_name: TAS2R46
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.072 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 86 percent done.
TAS2R5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.396687e-02	ci left: 5.613302e-01	ci right 5.808283e-01	k: 5711	n:10000
Cons ci ratio: 2.674103e-02	ci left: 6.731734e-01	ci right 6.915203e-01	k: 6824	n:10000
KS ci ratio: 8.213870e-02	ci left: 1.778256e-01	ci right 1.931581e-01	k: 1854	n:10000
TAS2R5   10000 perm   1 sec   (6983 perm/sec)   p_kst 1.854000e-01   p_cons 6.824000e-01   p_joint 5.711000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R5.2_904_10000_0.1854_0.6824_0.5711.png
                gene_name: TAS2R5
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 88 percent done.
TAS2R60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.962823e-03	ci left: 9.659399e-01	ci right 9.727830e-01	k: 9695	n:10000
KS ci ratio: 2.623040e-02	ci left: 6.815364e-01	ci right 6.997525e-01	k: 6907	n:10000
TAS2R60   10000 perm   1 sec   (6929 perm/sec)   p_kst 6.907000e-01   p_cons 9.695000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TAS2R60.2_961_10000_0.6907_0.9695_1.png
                gene_name: TAS2R60
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
TAS2R8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.382332e-02	ci left: 4.346283e-01	ci right 4.542041e-01	k: 4444	n:10000
Cons ci ratio: 4.661919e-02	ci left: 4.044221e-01	ci right 4.238280e-01	k: 4141	n:10000
KS ci ratio: 5.454299e-02	ci left: 3.312097e-01	ci right 3.498832e-01	k: 3405	n:10000
TAS2R8   10000 perm   2 sec   (6539 perm/sec)   p_kst 3.405000e-01   p_cons 4.141000e-01   p_joint 4.444000e-01

Outputting figure to mutsig2_images.part000000000171/TAS2R8.2_934_10000_0.3405_0.4141_0.4444.png
                gene_name: TAS2R8
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 91 percent done.
TBC1D10A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.326741e-03	ci left: 9.714304e-01	ci right 9.776890e-01	k: 9747	n:10000
KS ci ratio: 1.251182e-02	ci left: 9.017548e-01	ci right 9.132066e-01	k: 9076	n:10000
TBC1D10A   10000 perm   2 sec   (6084 perm/sec)   p_kst 9.076000e-01   p_cons 9.747000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000171/TBC1D10A.2_1563_10000_0.9076_0.9747_1.png
                gene_name: TBC1D10A
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
TBC1D10B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.167093e-02	ci left: 5.953393e-01	ci right 6.145996e-01	k: 6050	n:10000
Cons ci ratio: 1.369301e-02	ci left: 8.850350e-01	ci right 8.973360e-01	k: 8913	n:10000
KS ci ratio: 1.922817e-01	ci left: 3.605305e-02	ci right 4.381788e-02	k: 398	n:10000
TBC1D10B   10000 perm   2 sec   (5696 perm/sec)   p_kst 3.980000e-02   p_cons 8.913000e-01   p_joint 6.050000e-01

Joint ci ratio: 2.306717e-02	ci left: 5.839479e-01	ci right 5.976257e-01	k: 11816	n:20000
Cons ci ratio: 9.889699e-03	ci left: 8.826326e-01	ci right 8.914545e-01	k: 17742	n:20000
KS ci ratio: 1.373166e-01	ci left: 3.645585e-02	ci right 4.187918e-02	k: 782	n:20000
TBC1D10B   20000 perm   4 sec   (5011 perm/sec)   p_kst 3.910000e-02   p_cons 8.871000e-01   p_joint 5.908000e-01

Joint ci ratio: 1.532221e-02	ci left: 6.804123e-01	ci right 6.909517e-01	k: 20571	n:30000
Cons ci ratio: 8.605443e-03	ci left: 8.698881e-01	ci right 8.774393e-01	k: 26211	n:30000
KS ci ratio: 1.127453e-01	ci left: 3.654551e-02	ci right 4.094439e-02	k: 1161	n:30000
TBC1D10B   30000 perm   6 sec   (4754 perm/sec)   p_kst 3.870000e-02   p_cons 8.737000e-01   p_joint 6.857000e-01

Joint ci ratio: 2.014180e-02	ci left: 4.814406e-01	ci right 4.912614e-01	k: 19454	n:40000
Cons ci ratio: 7.467601e-03	ci left: 8.699501e-01	ci right 8.764957e-01	k: 34930	n:40000
KS ci ratio: 9.801416e-02	ci left: 3.656235e-02	ci right 4.035503e-02	k: 1537	n:40000
TBC1D10B   40000 perm   9 sec   (4581 perm/sec)   p_kst 3.842500e-02   p_cons 8.732500e-01   p_joint 4.863500e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D10B.2_2463_40000_0.038425_0.87325_0.48635.png
                gene_name: TBC1D10B
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 94 percent done.
TBC1D10C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.181215e+00	ci left: 4.796397e-04	ci right 1.838264e-03	k: 10	n:10000
Cons ci ratio: 8.061926e-03	ci left: 9.554502e-01	ci right 9.632793e-01	k: 9595	n:10000
KS ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
TBC1D10C   10000 perm   2 sec   (6566 perm/sec)   p_kst 4.000000e-04   p_cons 9.595000e-01   p_joint 1.000000e-03

Joint ci ratio: 3.871372e-01	ci left: 4.115134e-03	ci right 6.132872e-03	k: 101	n:20000
Cons ci ratio: 5.817477e-03	ci left: 9.549730e-01	ci right 9.605930e-01	k: 19157	n:20000
KS ci ratio: 1.047271e+00	ci left: 3.461416e-04	ci right 1.111263e-03	k: 13	n:20000
TBC1D10C   20000 perm   3 sec   (5727 perm/sec)   p_kst 6.500000e-04   p_cons 9.578500e-01   p_joint 5.050000e-03

Joint ci ratio: 4.058478e-01	ci left: 2.472860e-03	ci right 3.759688e-03	k: 92	n:30000
Cons ci ratio: 4.862653e-03	ci left: 9.535154e-01	ci right 9.581958e-01	k: 28677	n:30000
KS ci ratio: 8.170495e-01	ci left: 4.596314e-04	ci right 1.110066e-03	k: 22	n:30000
TBC1D10C   30000 perm   6 sec   (5433 perm/sec)   p_kst 7.333333e-04   p_cons 9.559000e-01   p_joint 3.066667e-03

Joint ci ratio: 3.238249e-01	ci left: 3.059825e-03	ci right 4.264004e-03	k: 145	n:40000
Cons ci ratio: 4.179560e-03	ci left: 9.544807e-01	ci right 9.585027e-01	k: 38261	n:40000
KS ci ratio: 7.154134e-01	ci left: 4.855960e-04	ci right 1.041056e-03	k: 29	n:40000
TBC1D10C   40000 perm   8 sec   (5238 perm/sec)   p_kst 7.250000e-04   p_cons 9.565250e-01   p_joint 3.625000e-03

Joint ci ratio: 3.001358e-01	ci left: 2.890289e-03	ci right 3.928687e-03	k: 169	n:50000
Cons ci ratio: 3.741054e-03	ci left: 9.546346e-01	ci right 9.582322e-01	k: 47823	n:50000
KS ci ratio: 6.441991e-01	ci left: 5.043285e-04	ci right 9.966455e-04	k: 36	n:50000
TBC1D10C   50000 perm   10 sec   (5068 perm/sec)   p_kst 7.200000e-04   p_cons 9.564600e-01   p_joint 3.380000e-03

Joint ci ratio: 3.038273e-01	ci left: 2.346853e-03	ci right 3.202370e-03	k: 165	n:60000
Cons ci ratio: 3.519961e-03	ci left: 9.521577e-01	ci right 9.555315e-01	k: 57232	n:60000
KS ci ratio: 5.975752e-01	ci left: 5.045436e-04	ci right 9.460802e-04	k: 42	n:60000
TBC1D10C   60000 perm   12 sec   (4917 perm/sec)   p_kst 7.000000e-04   p_cons 9.538667e-01   p_joint 2.750000e-03

Joint ci ratio: 2.760963e-01	ci left: 2.475326e-03	ci right 3.281045e-03	k: 200	n:70000
Cons ci ratio: 3.148673e-03	ci left: 9.552677e-01	ci right 9.582943e-01	k: 66976	n:70000
KS ci ratio: 5.656052e-01	ci left: 4.933809e-04	ci right 8.927588e-04	k: 47	n:70000
TBC1D10C   70000 perm   15 sec   (4787 perm/sec)   p_kst 6.714286e-04   p_cons 9.568000e-01   p_joint 2.857143e-03

Joint ci ratio: 3.012179e-01	ci left: 1.794713e-03	ci right 2.442245e-03	k: 168	n:80000
Cons ci ratio: 2.947044e-03	ci left: 9.553175e-01	ci right 9.581493e-01	k: 76540	n:80000
KS ci ratio: 5.332610e-01	ci left: 4.962961e-04	ci right 8.664779e-04	k: 53	n:80000
TBC1D10C   80000 perm   17 sec   (4670 perm/sec)   p_kst 6.625000e-04   p_cons 9.567500e-01   p_joint 2.100000e-03

Joint ci ratio: 2.676454e-01	ci left: 2.059793e-03	ci right 2.706283e-03	k: 213	n:90000
Cons ci ratio: 2.785728e-03	ci left: 9.551808e-01	ci right 9.578563e-01	k: 86088	n:90000
KS ci ratio: 4.976662e-01	ci left: 5.184847e-04	ci right 8.705499e-04	k: 61	n:90000
TBC1D10C   90000 perm   20 sec   (4570 perm/sec)   p_kst 6.777778e-04   p_cons 9.565333e-01   p_joint 2.366667e-03

Joint ci ratio: 2.522037e-01	ci left: 2.106243e-03	ci right 2.723185e-03	k: 240	n:100000
Cons ci ratio: 2.642216e-03	ci left: 9.552681e-01	ci right 9.578053e-01	k: 95655	n:100000
KS ci ratio: 4.752058e-01	ci left: 5.192773e-04	ci right 8.507994e-04	k: 67	n:100000
TBC1D10C   100000 perm   22 sec   (4478 perm/sec)   p_kst 6.700000e-04   p_cons 9.565500e-01   p_joint 2.400000e-03

Joint ci ratio: 2.343854e-01	ci left: 2.239205e-03	ci right 2.842047e-03	k: 278	n:110000
Cons ci ratio: 2.517717e-03	ci left: 9.553793e-01	ci right 9.577966e-01	k: 105226	n:110000
KS ci ratio: 4.353932e-01	ci left: 5.767229e-04	ci right 9.050733e-04	k: 80	n:110000
TBC1D10C   110000 perm   25 sec   (4379 perm/sec)   p_kst 7.272727e-04   p_cons 9.566000e-01   p_joint 2.527273e-03

Joint ci ratio: 2.241722e-01	ci left: 2.256834e-03	ci right 2.834293e-03	k: 304	n:120000
Cons ci ratio: 2.409303e-03	ci left: 9.554741e-01	ci right 9.577871e-01	k: 114797	n:120000
KS ci ratio: 4.250313e-01	ci left: 5.583846e-04	ci right 8.665754e-04	k: 84	n:120000
TBC1D10C   120000 perm   28 sec   (4290 perm/sec)   p_kst 7.000000e-04   p_cons 9.566417e-01   p_joint 2.533333e-03

Joint ci ratio: 2.021350e-01	ci left: 2.593066e-03	ci right 3.183301e-03	k: 374	n:130000
Cons ci ratio: 2.322146e-03	ci left: 9.552525e-01	ci right 9.574809e-01	k: 124329	n:130000
KS ci ratio: 4.063381e-01	ci left: 5.705368e-04	ci right 8.678523e-04	k: 92	n:130000
TBC1D10C   130000 perm   31 sec   (4200 perm/sec)   p_kst 7.076923e-04   p_cons 9.563769e-01   p_joint 2.876923e-03

Joint ci ratio: 1.964593e-01	ci left: 2.557144e-03	ci right 3.120902e-03	k: 396	n:140000
Cons ci ratio: 2.238769e-03	ci left: 9.552522e-01	ci right 9.574002e-01	k: 133887	n:140000
KS ci ratio: 3.958398e-01	ci left: 5.618953e-04	ci right 8.451626e-04	k: 97	n:140000
TBC1D10C   140000 perm   34 sec   (4124 perm/sec)   p_kst 6.928571e-04   p_cons 9.563357e-01   p_joint 2.828571e-03

Joint ci ratio: 1.974780e-01	ci left: 2.361293e-03	ci right 2.884895e-03	k: 392	n:150000
Cons ci ratio: 2.159454e-03	ci left: 9.554218e-01	ci right 9.574938e-01	k: 143470	n:150000
KS ci ratio: 3.880046e-01	ci left: 5.484735e-04	ci right 8.181018e-04	k: 101	n:150000
TBC1D10C   150000 perm   37 sec   (4056 perm/sec)   p_kst 6.733333e-04   p_cons 9.564667e-01   p_joint 2.613333e-03

Joint ci ratio: 1.924075e-01	ci left: 2.338554e-03	ci right 2.842240e-03	k: 413	n:160000
Cons ci ratio: 2.092860e-03	ci left: 9.553754e-01	ci right 9.573831e-01	k: 153022	n:160000
KS ci ratio: 3.770737e-01	ci left: 5.480881e-04	ci right 8.080596e-04	k: 107	n:160000
TBC1D10C   160000 perm   40 sec   (3990 perm/sec)   p_kst 6.687500e-04   p_cons 9.563875e-01   p_joint 2.581250e-03

Joint ci ratio: 1.896860e-01	ci left: 2.268196e-03	ci right 2.749021e-03	k: 425	n:170000
Cons ci ratio: 2.032494e-03	ci left: 9.553175e-01	ci right 9.572669e-01	k: 162571	n:170000
KS ci ratio: 3.654172e-01	ci left: 5.531835e-04	ci right 8.055269e-04	k: 114	n:170000
TBC1D10C   170000 perm   43 sec   (3926 perm/sec)   p_kst 6.705882e-04   p_cons 9.563000e-01   p_joint 2.500000e-03

Joint ci ratio: 1.837420e-01	ci left: 2.290473e-03	ci right 2.759112e-03	k: 453	n:180000
Cons ci ratio: 1.976273e-03	ci left: 9.553006e-01	ci right 9.571958e-01	k: 172126	n:180000
KS ci ratio: 3.519041e-01	ci left: 5.679480e-04	ci right 8.152596e-04	k: 123	n:180000
TBC1D10C   180000 perm   47 sec   (3862 perm/sec)   p_kst 6.833333e-04   p_cons 9.562556e-01   p_joint 2.516667e-03

Joint ci ratio: 1.803996e-01	ci left: 2.255314e-03	ci right 2.707448e-03	k: 470	n:190000
Cons ci ratio: 1.922173e-03	ci left: 9.553871e-01	ci right 9.572305e-01	k: 181700	n:190000
KS ci ratio: 3.423730e-01	ci left: 5.716868e-04	ci right 8.123923e-04	k: 130	n:190000
TBC1D10C   190000 perm   50 sec   (3801 perm/sec)   p_kst 6.842105e-04   p_cons 9.563158e-01   p_joint 2.473684e-03

Joint ci ratio: 1.749128e-01	ci left: 2.285882e-03	ci right 2.728734e-03	k: 500	n:200000
Cons ci ratio: 1.874636e-03	ci left: 9.553596e-01	ci right 9.571571e-01	k: 191253	n:200000
KS ci ratio: 3.335766e-01	ci left: 5.751328e-04	ci right 8.097315e-04	k: 137	n:200000
TBC1D10C   200000 perm   53 sec   (3742 perm/sec)   p_kst 6.850000e-04   p_cons 9.562650e-01   p_joint 2.500000e-03

Joint ci ratio: 1.802293e-01	ci left: 2.045049e-03	ci right 2.454599e-03	k: 471	n:210000
Cons ci ratio: 1.832123e-03	ci left: 9.552583e-01	ci right 9.570148e-01	k: 200790	n:210000
KS ci ratio: 3.311892e-01	ci left: 5.564737e-04	ci right 7.814902e-04	k: 139	n:210000
TBC1D10C   210000 perm   57 sec   (3684 perm/sec)   p_kst 6.619048e-04   p_cons 9.561429e-01   p_joint 2.242857e-03

Joint ci ratio: 1.770710e-01	ci left: 2.025908e-03	ci right 2.423753e-03	k: 488	n:220000
Cons ci ratio: 1.786834e-03	ci left: 9.554283e-01	ci right 9.571415e-01	k: 210384	n:220000
KS ci ratio: 3.243131e-01	ci left: 5.562085e-04	ci right 7.754767e-04	k: 145	n:220000
TBC1D10C   220000 perm   61 sec   (3628 perm/sec)   p_kst 6.590909e-04   p_cons 9.562909e-01   p_joint 2.218182e-03

Joint ci ratio: 1.717086e-01	ci left: 2.066729e-03	ci right 2.459027e-03	k: 519	n:230000
Cons ci ratio: 1.749999e-03	ci left: 9.553294e-01	ci right 9.570069e-01	k: 219920	n:230000
KS ci ratio: 3.107681e-01	ci left: 5.840463e-04	ci right 8.027679e-04	k: 158	n:230000
TBC1D10C   230000 perm   65 sec   (3563 perm/sec)   p_kst 6.869565e-04   p_cons 9.561739e-01   p_joint 2.256522e-03

Joint ci ratio: 1.688133e-01	ci left: 2.052418e-03	ci right 2.434762e-03	k: 537	n:240000
Cons ci ratio: 1.783894e-03	ci left: 9.517969e-01	ci right 9.535005e-01	k: 228637	n:240000
KS ci ratio: 3.014316e-01	ci left: 5.981791e-04	ci right 8.141746e-04	k: 168	n:240000
TBC1D10C   240000 perm   68 sec   (3509 perm/sec)   p_kst 7.000000e-04   p_cons 9.526542e-01   p_joint 2.237500e-03

Joint ci ratio: 1.642923e-01	ci left: 2.085323e-03	ci right 2.462365e-03	k: 567	n:250000
Cons ci ratio: 1.747737e-03	ci left: 9.518203e-01	ci right 9.534892e-01	k: 238165	n:250000
KS ci ratio: 2.962198e-01	ci left: 5.964528e-04	ci right 8.074017e-04	k: 174	n:250000
TBC1D10C   250000 perm   72 sec   (3458 perm/sec)   p_kst 6.960000e-04   p_cons 9.526600e-01   p_joint 2.268000e-03

Joint ci ratio: 1.613374e-01	ci left: 2.082596e-03	ci right 2.451716e-03	k: 588	n:260000
Cons ci ratio: 1.715007e-03	ci left: 9.517724e-01	ci right 9.534098e-01	k: 247675	n:260000
KS ci ratio: 2.920778e-01	ci left: 5.913241e-04	ci right 7.969938e-04	k: 179	n:260000
TBC1D10C   260000 perm   76 sec   (3407 perm/sec)   p_kst 6.884615e-04   p_cons 9.525962e-01   p_joint 2.261538e-03

Joint ci ratio: 1.603918e-01	ci left: 2.030341e-03	ci right 2.387886e-03	k: 595	n:270000
Cons ci ratio: 1.681494e-03	ci left: 9.518664e-01	ci right 9.534720e-01	k: 257222	n:270000
KS ci ratio: 2.896760e-01	ci left: 5.797231e-04	ci right 7.793959e-04	k: 182	n:270000
TBC1D10C   270000 perm   80 sec   (3356 perm/sec)   p_kst 6.740741e-04   p_cons 9.526741e-01   p_joint 2.203704e-03

Joint ci ratio: 1.697917e-01	ci left: 1.738671e-03	ci right 2.064635e-03	k: 531	n:280000
Cons ci ratio: 1.650652e-03	ci left: 9.519108e-01	ci right 9.534869e-01	k: 266757	n:280000
KS ci ratio: 2.828041e-01	ci left: 5.888549e-04	ci right 7.860037e-04	k: 191	n:280000
TBC1D10C   280000 perm   85 sec   (3309 perm/sec)   p_kst 6.821429e-04   p_cons 9.527036e-01   p_joint 1.896429e-03

Joint ci ratio: 1.696377e-01	ci left: 1.682014e-03	ci right 1.997040e-03	k: 532	n:290000
Cons ci ratio: 1.622254e-03	ci left: 9.519072e-01	ci right 9.534561e-01	k: 276279	n:290000
KS ci ratio: 2.799049e-01	ci left: 5.813693e-04	ci right 7.736644e-04	k: 195	n:290000
TBC1D10C   290000 perm   89 sec   (3262 perm/sec)   p_kst 6.724138e-04   p_cons 9.526862e-01   p_joint 1.834483e-03

Joint ci ratio: 1.671481e-01	ci left: 1.677032e-03	ci right 1.986052e-03	k: 548	n:300000
Cons ci ratio: 1.594270e-03	ci left: 9.519612e-01	ci right 9.534834e-01	k: 285818	n:300000
KS ci ratio: 2.750365e-01	ci left: 5.837005e-04	ci right 7.728280e-04	k: 202	n:300000
TBC1D10C   300000 perm   93 sec   (3217 perm/sec)   p_kst 6.733333e-04   p_cons 9.527267e-01   p_joint 1.826667e-03

Joint ci ratio: 1.644736e-01	ci left: 1.678590e-03	ci right 1.982457e-03	k: 566	n:310000
Cons ci ratio: 1.570099e-03	ci left: 9.518721e-01	ci right 9.533710e-01	k: 295314	n:310000
KS ci ratio: 2.704136e-01	ci left: 5.859083e-04	ci right 7.720188e-04	k: 209	n:310000
TBC1D10C   310000 perm   98 sec   (3173 perm/sec)   p_kst 6.741935e-04   p_cons 9.526258e-01   p_joint 1.825806e-03

Joint ci ratio: 1.623411e-01	ci left: 1.671091e-03	ci right 1.969297e-03	k: 581	n:320000
Cons ci ratio: 1.544046e-03	ci left: 9.519620e-01	ci right 9.534361e-01	k: 304865	n:320000
KS ci ratio: 2.654050e-01	ci left: 5.909199e-04	ci right 7.745680e-04	k: 217	n:320000
TBC1D10C   320000 perm   102 sec   (3131 perm/sec)   p_kst 6.781250e-04   p_cons 9.527031e-01   p_joint 1.815625e-03

Joint ci ratio: 1.596212e-01	ci left: 1.678617e-03	ci right 1.972666e-03	k: 601	n:330000
Cons ci ratio: 1.518323e-03	ci left: 9.521015e-01	ci right 9.535512e-01	k: 314434	n:330000
KS ci ratio: 2.618267e-01	ci left: 5.899937e-04	ci right 7.704769e-04	k: 223	n:330000
TBC1D10C   330000 perm   107 sec   (3088 perm/sec)   p_kst 6.757576e-04   p_cons 9.528303e-01   p_joint 1.821212e-03

Joint ci ratio: 1.464452e-01	ci left: 1.948914e-03	ci right 2.259669e-03	k: 714	n:340000
Cons ci ratio: 1.494961e-03	ci left: 9.521648e-01	ci right 9.535922e-01	k: 323980	n:340000
KS ci ratio: 2.561698e-01	ci left: 6.001440e-04	ci right 7.791320e-04	k: 233	n:340000
TBC1D10C   340000 perm   112 sec   (3047 perm/sec)   p_kst 6.852941e-04   p_cons 9.528824e-01   p_joint 2.100000e-03

Joint ci ratio: 1.440470e-01	ci left: 1.959311e-03	ci right 2.266168e-03	k: 738	n:350000
Cons ci ratio: 1.474518e-03	ci left: 9.521095e-01	ci right 9.535173e-01	k: 333486	n:350000
KS ci ratio: 2.534768e-01	ci left: 5.963702e-04	ci right 7.720675e-04	k: 238	n:350000
TBC1D10C   350000 perm   116 sec   (3010 perm/sec)   p_kst 6.800000e-04   p_cons 9.528171e-01   p_joint 2.108571e-03

Joint ci ratio: 1.427031e-01	ci left: 1.942379e-03	ci right 2.243504e-03	k: 752	n:360000
Cons ci ratio: 1.453002e-03	ci left: 9.521749e-01	ci right 9.535622e-01	k: 343034	n:360000
KS ci ratio: 2.498443e-01	ci left: 5.980226e-04	ci right 7.712893e-04	k: 245	n:360000
TBC1D10C   360000 perm   121 sec   (2974 perm/sec)   p_kst 6.805556e-04   p_cons 9.528722e-01   p_joint 2.088889e-03

Joint ci ratio: 1.394066e-01	ci left: 1.983749e-03	ci right 2.283593e-03	k: 788	n:370000
Cons ci ratio: 1.433177e-03	ci left: 9.521880e-01	ci right 9.535563e-01	k: 352564	n:370000
KS ci ratio: 2.463637e-01	ci left: 5.996027e-04	ci right 7.705364e-04	k: 252	n:370000
TBC1D10C   370000 perm   126 sec   (2937 perm/sec)   p_kst 6.810811e-04   p_cons 9.528757e-01   p_joint 2.129730e-03

Joint ci ratio: 1.389700e-01	ci left: 1.944242e-03	ci right 2.237118e-03	k: 793	n:380000
Cons ci ratio: 1.413685e-03	ci left: 9.522296e-01	ci right 9.535793e-01	k: 362105	n:380000
KS ci ratio: 2.458801e-01	ci left: 5.862924e-04	ci right 7.530534e-04	k: 253	n:380000
TBC1D10C   380000 perm   131 sec   (2902 perm/sec)   p_kst 6.657895e-04   p_cons 9.529079e-01   p_joint 2.086842e-03

Joint ci ratio: 1.368318e-01	ci left: 1.956281e-03	ci right 2.246068e-03	k: 818	n:390000
Cons ci ratio: 1.397836e-03	ci left: 9.520833e-01	ci right 9.534176e-01	k: 371574	n:390000
KS ci ratio: 2.416357e-01	ci left: 5.929270e-04	ci right 7.582277e-04	k: 262	n:390000
TBC1D10C   390000 perm   136 sec   (2868 perm/sec)   p_kst 6.717949e-04   p_cons 9.527538e-01   p_joint 2.097436e-03

Joint ci ratio: 1.335270e-01	ci left: 2.006412e-03	ci right 2.295876e-03	k: 859	n:400000
Cons ci ratio: 1.380847e-03	ci left: 9.520527e-01	ci right 9.533707e-01	k: 381086	n:400000
KS ci ratio: 2.398197e-01	ci left: 5.875005e-04	ci right 7.498743e-04	k: 266	n:400000
TBC1D10C   400000 perm   141 sec   (2835 perm/sec)   p_kst 6.650000e-04   p_cons 9.527150e-01   p_joint 2.147500e-03

Joint ci ratio: 1.319260e-01	ci left: 2.006994e-03	ci right 2.292798e-03	k: 880	n:410000
Cons ci ratio: 1.363391e-03	ci left: 9.520949e-01	ci right 9.533963e-01	k: 390627	n:410000
KS ci ratio: 2.384847e-01	ci left: 5.800496e-04	ci right 7.393398e-04	k: 269	n:410000
TBC1D10C   410000 perm   146 sec   (2803 perm/sec)   p_kst 6.560976e-04   p_cons 9.527488e-01   p_joint 2.146341e-03

Joint ci ratio: 1.305992e-01	ci left: 2.000657e-03	ci right 2.282472e-03	k: 898	n:420000
Cons ci ratio: 1.348361e-03	ci left: 9.520153e-01	ci right 9.533022e-01	k: 400118	n:420000
KS ci ratio: 2.354520e-01	ci left: 5.819162e-04	ci right 7.393907e-04	k: 276	n:420000
TBC1D10C   420000 perm   152 sec   (2770 perm/sec)   p_kst 6.571429e-04   p_cons 9.526619e-01   p_joint 2.138095e-03

Joint ci ratio: 1.291705e-01	ci left: 1.999131e-03	ci right 2.277414e-03	k: 918	n:430000
Cons ci ratio: 1.331408e-03	ci left: 9.521034e-01	ci right 9.533742e-01	k: 409679	n:430000
KS ci ratio: 2.321235e-01	ci left: 5.858984e-04	ci right 7.418878e-04	k: 284	n:430000
TBC1D10C   430000 perm   157 sec   (2739 perm/sec)   p_kst 6.604651e-04   p_cons 9.527419e-01   p_joint 2.134884e-03

Joint ci ratio: 1.277876e-01	ci left: 1.997689e-03	ci right 2.272569e-03	k: 938	n:440000
Cons ci ratio: 1.316304e-03	ci left: 9.521029e-01	ci right 9.533593e-01	k: 419203	n:440000
KS ci ratio: 2.289323e-01	ci left: 5.897145e-04	ci right 7.442565e-04	k: 292	n:440000
TBC1D10C   440000 perm   162 sec   (2709 perm/sec)   p_kst 6.636364e-04   p_cons 9.527341e-01   p_joint 2.131818e-03

Joint ci ratio: 1.265144e-01	ci left: 1.994175e-03	ci right 2.265632e-03	k: 957	n:450000
Cons ci ratio: 1.301318e-03	ci left: 9.521294e-01	ci right 9.533714e-01	k: 428739	n:450000
KS ci ratio: 2.258692e-01	ci left: 5.933750e-04	ci right 7.465060e-04	k: 300	n:450000
TBC1D10C   450000 perm   168 sec   (2679 perm/sec)   p_kst 6.666667e-04   p_cons 9.527533e-01   p_joint 2.126667e-03

Joint ci ratio: 1.168328e-01	ci left: 2.298639e-03	ci right 2.585946e-03	k: 1122	n:460000
Cons ci ratio: 1.286925e-03	ci left: 9.521482e-01	ci right 9.533765e-01	k: 438272	n:460000
KS ci ratio: 2.225658e-01	ci left: 5.989422e-04	ci right 7.509396e-04	k: 309	n:460000
TBC1D10C   460000 perm   174 sec   (2650 perm/sec)   p_kst 6.717391e-04   p_cons 9.527652e-01   p_joint 2.439130e-03

Joint ci ratio: 1.158575e-01	ci left: 2.288980e-03	ci right 2.572528e-03	k: 1141	n:470000
Cons ci ratio: 1.272668e-03	ci left: 9.521899e-01	ci right 9.534045e-01	k: 447816	n:470000
KS ci ratio: 2.211443e-01	ci left: 5.942363e-04	ci right 7.439452e-04	k: 313	n:470000
TBC1D10C   470000 perm   179 sec   (2620 perm/sec)   p_kst 6.659574e-04   p_cons 9.528000e-01   p_joint 2.427660e-03

Joint ci ratio: 1.225492e-01	ci left: 1.996702e-03	ci right 2.259366e-03	k: 1020	n:480000
Cons ci ratio: 1.259837e-03	ci left: 9.521607e-01	ci right 9.533630e-01	k: 457327	n:480000
KS ci ratio: 2.190614e-01	ci left: 5.936673e-04	ci right 7.416344e-04	k: 319	n:480000
TBC1D10C   480000 perm   185 sec   (2591 perm/sec)   p_kst 6.645833e-04   p_cons 9.527646e-01   p_joint 2.125000e-03

Joint ci ratio: 1.132587e-01	ci left: 2.300618e-03	ci right 2.578787e-03	k: 1194	n:490000
Cons ci ratio: 1.246452e-03	ci left: 9.522005e-01	ci right 9.533901e-01	k: 466871	n:490000
KS ci ratio: 2.160438e-01	ci left: 5.989184e-04	ci right 7.458653e-04	k: 328	n:490000
TBC1D10C   490000 perm   191 sec   (2562 perm/sec)   p_kst 6.693878e-04   p_cons 9.527980e-01   p_joint 2.436735e-03

Joint ci ratio: 1.120922e-01	ci left: 2.303196e-03	ci right 2.578620e-03	k: 1219	n:500000
Cons ci ratio: 1.233759e-03	ci left: 9.522186e-01	ci right 9.533961e-01	k: 476405	n:500000
KS ci ratio: 2.134638e-01	ci left: 6.020796e-04	ci right 7.478071e-04	k: 336	n:500000
TBC1D10C   500000 perm   197 sec   (2534 perm/sec)   p_kst 6.720000e-04   p_cons 9.528100e-01   p_joint 2.438000e-03

Joint ci ratio: 1.112300e-01	ci left: 2.294249e-03	ci right 2.566354e-03	k: 1238	n:510000
Cons ci ratio: 1.221739e-03	ci left: 9.522144e-01	ci right 9.533804e-01	k: 485928	n:510000
KS ci ratio: 2.122087e-01	ci left: 5.976991e-04	ci right 7.414050e-04	k: 340	n:510000
TBC1D10C   510000 perm   203 sec   (2507 perm/sec)   p_kst 6.666667e-04   p_cons 9.528000e-01   p_joint 2.427451e-03

Joint ci ratio: 1.103874e-01	ci left: 2.285654e-03	ci right 2.554553e-03	k: 1257	n:520000
Cons ci ratio: 1.210063e-03	ci left: 9.522104e-01	ci right 9.533653e-01	k: 495451	n:520000
KS ci ratio: 2.112821e-01	ci left: 5.916680e-04	ci right 7.332222e-04	k: 343	n:520000
TBC1D10C   520000 perm   210 sec   (2479 perm/sec)   p_kst 6.596154e-04   p_cons 9.527904e-01   p_joint 2.417308e-03

Joint ci ratio: 1.094348e-01	ci left: 2.282897e-03	ci right 2.549004e-03	k: 1279	n:530000
Cons ci ratio: 1.199294e-03	ci left: 9.521630e-01	ci right 9.533075e-01	k: 504951	n:530000
KS ci ratio: 2.091646e-01	ci left: 5.930167e-04	ci right 7.332897e-04	k: 350	n:530000
TBC1D10C   530000 perm   216 sec   (2451 perm/sec)   p_kst 6.603774e-04   p_cons 9.527377e-01   p_joint 2.413208e-03

Joint ci ratio: 1.085483e-01	ci left: 2.278449e-03	ci right 2.541749e-03	k: 1300	n:540000
Cons ci ratio: 1.188171e-03	ci left: 9.521658e-01	ci right 9.532997e-01	k: 514477	n:540000
KS ci ratio: 2.071096e-01	ci left: 5.943223e-04	ci right 7.333478e-04	k: 357	n:540000
TBC1D10C   540000 perm   223 sec   (2426 perm/sec)   p_kst 6.611111e-04   p_cons 9.527352e-01   p_joint 2.407407e-03

Joint ci ratio: 1.077239e-01	ci left: 2.272403e-03	ci right 2.532883e-03	k: 1320	n:550000
Cons ci ratio: 1.176710e-03	ci left: 9.522180e-01	ci right 9.533409e-01	k: 524030	n:550000
KS ci ratio: 2.045539e-01	ci left: 5.990369e-04	ci right 7.372199e-04	k: 366	n:550000
TBC1D10C   550000 perm   229 sec   (2400 perm/sec)   p_kst 6.654545e-04   p_cons 9.527818e-01   p_joint 2.400000e-03

Joint ci ratio: 1.151251e-01	ci left: 1.947101e-03	ci right 2.186669e-03	k: 1156	n:560000
Cons ci ratio: 1.165689e-03	ci left: 9.522593e-01	ci right 9.533717e-01	k: 533578	n:560000
KS ci ratio: 2.029021e-01	ci left: 5.985075e-04	ci right 7.353154e-04	k: 372	n:560000
TBC1D10C   560000 perm   236 sec   (2375 perm/sec)   p_kst 6.642857e-04   p_cons 9.528179e-01   p_joint 2.064286e-03

Joint ci ratio: 1.058961e-01	ci left: 2.271215e-03	ci right 2.526867e-03	k: 1366	n:570000
Cons ci ratio: 1.156008e-03	ci left: 9.522181e-01	ci right 9.533212e-01	k: 543080	n:570000
KS ci ratio: 1.997140e-01	ci left: 6.079992e-04	ci right 7.445271e-04	k: 384	n:570000
TBC1D10C   570000 perm   242 sec   (2352 perm/sec)   p_kst 6.736842e-04   p_cons 9.527719e-01   p_joint 2.396491e-03

Joint ci ratio: 1.049408e-01	ci left: 2.274023e-03	ci right 2.527539e-03	k: 1391	n:580000
Cons ci ratio: 1.146432e-03	ci left: 9.521887e-01	ci right 9.532826e-01	k: 552588	n:580000
KS ci ratio: 1.976707e-01	ci left: 6.106235e-04	ci right 7.461687e-04	k: 392	n:580000
TBC1D10C   580000 perm   249 sec   (2329 perm/sec)   p_kst 6.758621e-04   p_cons 9.527379e-01   p_joint 2.398276e-03

Joint ci ratio: 1.039741e-01	ci left: 2.278397e-03	ci right 2.529918e-03	k: 1417	n:590000
Cons ci ratio: 1.136875e-03	ci left: 9.521774e-01	ci right 9.532622e-01	k: 562106	n:590000
KS ci ratio: 1.954450e-01	ci left: 6.147776e-04	ci right 7.495256e-04	k: 401	n:590000
TBC1D10C   590000 perm   256 sec   (2307 perm/sec)   p_kst 6.796610e-04   p_cons 9.527220e-01   p_joint 2.401695e-03

Joint ci ratio: 1.029265e-01	ci left: 2.287507e-03	ci right 2.537336e-03	k: 1446	n:600000
Cons ci ratio: 1.128095e-03	ci left: 9.521230e-01	ci right 9.531993e-01	k: 571598	n:600000
KS ci ratio: 1.930581e-01	ci left: 6.203876e-04	ci right 7.545095e-04	k: 411	n:600000
TBC1D10C   600000 perm   263 sec   (2285 perm/sec)   p_kst 6.850000e-04   p_cons 9.526633e-01   p_joint 2.410000e-03

Joint ci ratio: 1.021530e-01	ci left: 2.285148e-03	ci right 2.532730e-03	k: 1468	n:610000
Cons ci ratio: 1.118925e-03	ci left: 9.521182e-01	ci right 9.531857e-01	k: 581119	n:610000
KS ci ratio: 1.914386e-01	ci left: 6.211405e-04	ci right 7.541675e-04	k: 418	n:610000
TBC1D10C   610000 perm   269 sec   (2264 perm/sec)   p_kst 6.852459e-04   p_cons 9.526541e-01   p_joint 2.406557e-03

Joint ci ratio: 1.012268e-01	ci left: 2.290732e-03	ci right 2.536535e-03	k: 1495	n:620000
Cons ci ratio: 1.110034e-03	ci left: 9.521087e-01	ci right 9.531677e-01	k: 590637	n:620000
KS ci ratio: 1.891937e-01	ci left: 6.264828e-04	ci right 7.588999e-04	k: 428	n:620000
TBC1D10C   620000 perm   276 sec   (2243 perm/sec)   p_kst 6.903226e-04   p_cons 9.526403e-01   p_joint 2.411290e-03

Joint ci ratio: 1.003913e-01	ci left: 2.293053e-03	ci right 2.536955e-03	k: 1520	n:630000
Cons ci ratio: 1.100905e-03	ci left: 9.521362e-01	ci right 9.531866e-01	k: 600178	n:630000
KS ci ratio: 1.872396e-01	ci left: 6.301514e-04	ci right 7.618118e-04	k: 437	n:630000
TBC1D10C   630000 perm   284 sec   (2222 perm/sec)   p_kst 6.936508e-04   p_cons 9.526635e-01   p_joint 2.412698e-03

Joint ci ratio: 9.919111e-02	ci left: 2.313595e-03	ci right 2.556569e-03	k: 1557	n:640000
Cons ci ratio: 1.092188e-03	ci left: 9.521472e-01	ci right 9.531893e-01	k: 609709	n:640000
KS ci ratio: 1.843160e-01	ci left: 6.411633e-04	ci right 7.727992e-04	k: 451	n:640000
TBC1D10C   640000 perm   291 sec   (2200 perm/sec)   p_kst 7.046875e-04   p_cons 9.526703e-01   p_joint 2.432813e-03

Joint ci ratio: 9.834243e-02	ci left: 2.318514e-03	ci right 2.559801e-03	k: 1584	n:650000
Cons ci ratio: 1.084432e-03	ci left: 9.520945e-01	ci right 9.531291e-01	k: 619199	n:650000
KS ci ratio: 1.831049e-01	ci left: 6.401055e-04	ci right 7.705648e-04	k: 457	n:650000
TBC1D10C   650000 perm   298 sec   (2181 perm/sec)   p_kst 7.030769e-04   p_cons 9.526138e-01   p_joint 2.436923e-03

Joint ci ratio: 9.724343e-02	ci left: 2.336597e-03	ci right 2.576894e-03	k: 1620	n:660000
Cons ci ratio: 1.076964e-03	ci left: 9.520328e-01	ci right 9.530602e-01	k: 628682	n:660000
KS ci ratio: 1.809443e-01	ci left: 6.463144e-04	ci right 7.763146e-04	k: 468	n:660000
TBC1D10C   660000 perm   305 sec   (2161 perm/sec)   p_kst 7.090909e-04   p_cons 9.525485e-01   p_joint 2.454545e-03

Joint ci ratio: 9.653149e-02	ci left: 2.336676e-03	ci right 2.575121e-03	k: 1644	n:670000
Cons ci ratio: 1.068940e-03	ci left: 9.520330e-01	ci right 9.530527e-01	k: 638205	n:670000
KS ci ratio: 1.797980e-01	ci left: 6.452188e-04	ci right 7.740870e-04	k: 474	n:670000
TBC1D10C   670000 perm   313 sec   (2141 perm/sec)   p_kst 7.074627e-04   p_cons 9.525448e-01   p_joint 2.453731e-03

Joint ci ratio: 9.492699e-02	ci left: 2.382697e-03	ci right 2.621573e-03	k: 1700	n:680000
Cons ci ratio: 1.061663e-03	ci left: 9.519844e-01	ci right 9.529971e-01	k: 647695	n:680000
KS ci ratio: 1.788594e-01	ci left: 6.427531e-04	ci right 7.703861e-04	k: 479	n:680000
TBC1D10C   680000 perm   320 sec   (2122 perm/sec)   p_kst 7.044118e-04   p_cons 9.524926e-01   p_joint 2.500000e-03

Joint ci ratio: 9.487282e-02	ci left: 2.350993e-03	ci right 2.586548e-03	k: 1702	n:690000
Cons ci ratio: 1.053721e-03	ci left: 9.520071e-01	ci right 9.530122e-01	k: 657233	n:690000
KS ci ratio: 1.773872e-01	ci left: 6.445152e-04	ci right 7.713316e-04	k: 487	n:690000
TBC1D10C   690000 perm   328 sec   (2103 perm/sec)   p_kst 7.057971e-04   p_cons 9.525116e-01   p_joint 2.466667e-03

Joint ci ratio: 9.415670e-02	ci left: 2.353672e-03	ci right 2.587618e-03	k: 1728	n:700000
Cons ci ratio: 1.046631e-03	ci left: 9.519704e-01	ci right 9.529687e-01	k: 666730	n:700000
KS ci ratio: 1.761285e-01	ci left: 6.448654e-04	ci right 7.707545e-04	k: 494	n:700000
TBC1D10C   700000 perm   336 sec   (2085 perm/sec)   p_kst 7.057143e-04   p_cons 9.524714e-01   p_joint 2.468571e-03

Joint ci ratio: 9.356351e-02	ci left: 2.350781e-03	ci right 2.582886e-03	k: 1750	n:710000
Cons ci ratio: 1.038923e-03	ci left: 9.520013e-01	ci right 9.529922e-01	k: 676274	n:710000
KS ci ratio: 1.754215e-01	ci left: 6.411686e-04	ci right 7.657804e-04	k: 498	n:710000
TBC1D10C   710000 perm   343 sec   (2067 perm/sec)   p_kst 7.014085e-04   p_cons 9.524986e-01   p_joint 2.464789e-03

Joint ci ratio: 9.277180e-02	ci left: 2.358827e-03	ci right 2.589649e-03	k: 1780	n:720000
Cons ci ratio: 1.031825e-03	ci left: 9.519922e-01	ci right 9.529764e-01	k: 685790	n:720000
KS ci ratio: 1.740319e-01	ci left: 6.428888e-04	ci right 7.667411e-04	k: 506	n:720000
TBC1D10C   720000 perm   351 sec   (2049 perm/sec)   p_kst 7.027778e-04   p_cons 9.524861e-01   p_joint 2.472222e-03

Joint ci ratio: 9.131993e-02	ci left: 2.402802e-03	ci right 2.634051e-03	k: 1837	n:730000
Cons ci ratio: 1.024808e-03	ci left: 9.519889e-01	ci right 9.529664e-01	k: 695310	n:730000
KS ci ratio: 1.730113e-01	ci left: 6.419443e-04	ci right 7.648136e-04	k: 512	n:730000
TBC1D10C   730000 perm   359 sec   (2031 perm/sec)   p_kst 7.013699e-04   p_cons 9.524795e-01   p_joint 2.516438e-03

Joint ci ratio: 9.077846e-02	ci left: 2.399384e-03	ci right 2.628862e-03	k: 1859	n:740000
Cons ci ratio: 1.017842e-03	ci left: 9.519939e-01	ci right 9.529647e-01	k: 704836	n:740000
KS ci ratio: 1.720084e-01	ci left: 6.410273e-04	ci right 7.629362e-04	k: 518	n:740000
TBC1D10C   740000 perm   367 sec   (2014 perm/sec)   p_kst 7.000000e-04   p_cons 9.524811e-01   p_joint 2.512162e-03

Joint ci ratio: 9.007872e-02	ci left: 2.405185e-03	ci right 2.633351e-03	k: 1888	n:750000
Cons ci ratio: 1.011045e-03	ci left: 9.519961e-01	ci right 9.529604e-01	k: 714360	n:750000
KS ci ratio: 1.703746e-01	ci left: 6.452425e-04	ci right 7.666676e-04	k: 528	n:750000
TBC1D10C   750000 perm   376 sec   (1997 perm/sec)   p_kst 7.040000e-04   p_cons 9.524800e-01   p_joint 2.517333e-03

Joint ci ratio: 8.962946e-02	ci left: 2.397975e-03	ci right 2.624264e-03	k: 1907	n:760000
Cons ci ratio: 1.005186e-03	ci left: 9.519255e-01	ci right 9.528842e-01	k: 723829	n:760000
KS ci ratio: 1.692584e-01	ci left: 6.455715e-04	ci right 7.661815e-04	k: 535	n:760000
TBC1D10C   760000 perm   384 sec   (1979 perm/sec)   p_kst 7.039474e-04   p_cons 9.524066e-01   p_joint 2.509211e-03

Joint ci ratio: 8.904798e-02	ci left: 2.398575e-03	ci right 2.623375e-03	k: 1932	n:770000
Cons ci ratio: 9.985237e-04	ci left: 9.519390e-01	ci right 9.528913e-01	k: 733361	n:770000
KS ci ratio: 1.675474e-01	ci left: 6.508713e-04	ci right 7.711181e-04	k: 546	n:770000
TBC1D10C   770000 perm   392 sec   (1963 perm/sec)   p_kst 7.090909e-04   p_cons 9.524169e-01   p_joint 2.509091e-03

Joint ci ratio: 8.850033e-02	ci left: 2.397910e-03	ci right 2.621195e-03	k: 1956	n:780000
Cons ci ratio: 9.918659e-04	ci left: 9.519638e-01	ci right 9.529098e-01	k: 742902	n:780000
KS ci ratio: 1.664856e-01	ci left: 6.511260e-04	ci right 7.705811e-04	k: 553	n:780000
TBC1D10C   780000 perm   401 sec   (1947 perm/sec)   p_kst 7.089744e-04   p_cons 9.524385e-01   p_joint 2.507692e-03

Joint ci ratio: 8.787377e-02	ci left: 2.402219e-03	ci right 2.624239e-03	k: 1984	n:790000
Cons ci ratio: 9.858626e-04	ci left: 9.519396e-01	ci right 9.528798e-01	k: 752405	n:790000
KS ci ratio: 1.648566e-01	ci left: 6.562308e-04	ci right 7.753276e-04	k: 564	n:790000
TBC1D10C   790000 perm   409 sec   (1932 perm/sec)   p_kst 7.139241e-04   p_cons 9.524114e-01   p_joint 2.511392e-03

Joint ci ratio: 8.736917e-02	ci left: 2.400311e-03	ci right 2.620816e-03	k: 2007	n:800000
Cons ci ratio: 9.802232e-04	ci left: 9.518922e-01	ci right 9.528270e-01	k: 761889	n:800000
KS ci ratio: 1.639882e-01	ci left: 6.552193e-04	ci right 7.734444e-04	k: 570	n:800000
TBC1D10C   800000 perm   417 sec   (1916 perm/sec)   p_kst 7.125000e-04   p_cons 9.523613e-01   p_joint 2.508750e-03

Joint ci ratio: 8.685174e-02	ci left: 2.399661e-03	ci right 2.618735e-03	k: 2031	n:810000
Cons ci ratio: 9.743605e-04	ci left: 9.518758e-01	ci right 9.528049e-01	k: 771397	n:810000
KS ci ratio: 1.634172e-01	ci left: 6.518660e-04	ci right 7.690362e-04	k: 574	n:810000
TBC1D10C   810000 perm   426 sec   (1901 perm/sec)   p_kst 7.086420e-04   p_cons 9.523420e-01   p_joint 2.507407e-03

Joint ci ratio: 8.630132e-02	ci left: 2.401418e-03	ci right 2.619193e-03	k: 2057	n:820000
Cons ci ratio: 9.688356e-04	ci left: 9.518377e-01	ci right 9.527615e-01	k: 780887	n:820000
KS ci ratio: 1.628520e-01	ci left: 6.485953e-04	ci right 7.647349e-04	k: 578	n:820000
TBC1D10C   820000 perm   435 sec   (1886 perm/sec)   p_kst 7.048780e-04   p_cons 9.523012e-01   p_joint 2.508537e-03

Joint ci ratio: 8.638683e-02	ci left: 2.367768e-03	ci right 2.582715e-03	k: 2053	n:830000
Cons ci ratio: 9.632753e-04	ci left: 9.518127e-01	ci right 9.527312e-01	k: 790387	n:830000
KS ci ratio: 1.614634e-01	ci left: 6.523402e-04	ci right 7.680578e-04	k: 588	n:830000
TBC1D10C   830000 perm   444 sec   (1871 perm/sec)   p_kst 7.084337e-04   p_cons 9.522735e-01   p_joint 2.473494e-03

Joint ci ratio: 8.586585e-02	ci left: 2.368702e-03	ci right 2.582371e-03	k: 2078	n:840000
Cons ci ratio: 9.582731e-04	ci left: 9.517440e-01	ci right 9.526576e-01	k: 799850	n:840000
KS ci ratio: 1.601096e-01	ci left: 6.560001e-04	ci right 7.712974e-04	k: 598	n:840000
TBC1D10C   840000 perm   453 sec   (1856 perm/sec)   p_kst 7.119048e-04   p_cons 9.522024e-01   p_joint 2.473810e-03

Joint ci ratio: 8.535418e-02	ci left: 2.369617e-03	ci right 2.582032e-03	k: 2103	n:850000
Cons ci ratio: 9.521887e-04	ci left: 9.517881e-01	ci right 9.526959e-01	k: 809407	n:850000
KS ci ratio: 1.590510e-01	ci left: 6.573184e-04	ci right 7.720106e-04	k: 606	n:850000
TBC1D10C   850000 perm   462 sec   (1841 perm/sec)   p_kst 7.129412e-04   p_cons 9.522435e-01   p_joint 2.474118e-03

Joint ci ratio: 8.487153e-02	ci left: 2.369376e-03	ci right 2.580509e-03	k: 2127	n:860000
Cons ci ratio: 9.464359e-04	ci left: 9.518101e-01	ci right 9.527125e-01	k: 818946	n:860000
KS ci ratio: 1.581418e-01	ci left: 6.574917e-04	ci right 7.714961e-04	k: 613	n:860000
TBC1D10C   860000 perm   471 sec   (1827 perm/sec)   p_kst 7.127907e-04   p_cons 9.522628e-01   p_joint 2.473256e-03

Joint ci ratio: 8.424015e-02	ci left: 2.378146e-03	ci right 2.588407e-03	k: 2159	n:870000
Cons ci ratio: 9.410002e-04	ci left: 9.518108e-01	ci right 9.527080e-01	k: 828467	n:870000
KS ci ratio: 1.567436e-01	ci left: 6.620800e-04	ci right 7.757695e-04	k: 624	n:870000
TBC1D10C   870000 perm   480 sec   (1813 perm/sec)   p_kst 7.172414e-04   p_cons 9.522609e-01   p_joint 2.481609e-03

Joint ci ratio: 8.369925e-02	ci left: 2.382272e-03	ci right 2.591479e-03	k: 2187	n:880000
Cons ci ratio: 9.354933e-04	ci left: 9.518275e-01	ci right 9.527195e-01	k: 838002	n:880000
KS ci ratio: 1.558731e-01	ci left: 6.621998e-04	ci right 7.752194e-04	k: 631	n:880000
TBC1D10C   880000 perm   489 sec   (1800 perm/sec)   p_kst 7.170455e-04   p_cons 9.522750e-01   p_joint 2.485227e-03

Joint ci ratio: 8.268378e-02	ci left: 2.414918e-03	ci right 2.624295e-03	k: 2241	n:890000
Cons ci ratio: 9.303464e-04	ci left: 9.518179e-01	ci right 9.527050e-01	k: 847514	n:890000
KS ci ratio: 1.547748e-01	ci left: 6.644787e-04	ci right 7.770141e-04	k: 640	n:890000
TBC1D10C   890000 perm   498 sec   (1787 perm/sec)   p_kst 7.191011e-04   p_cons 9.522629e-01   p_joint 2.517978e-03

Joint ci ratio: 8.277752e-02	ci left: 2.382644e-03	ci right 2.589468e-03	k: 2236	n:900000
Cons ci ratio: 9.251025e-04	ci left: 9.518264e-01	ci right 9.527084e-01	k: 857042	n:900000
KS ci ratio: 1.534633e-01	ci left: 6.688466e-04	ci right 7.810737e-04	k: 651	n:900000
TBC1D10C   900000 perm   508 sec   (1773 perm/sec)   p_kst 7.233333e-04   p_cons 9.522689e-01   p_joint 2.484444e-03

Joint ci ratio: 8.248347e-02	ci left: 2.373679e-03	ci right 2.578958e-03	k: 2252	n:910000
Cons ci ratio: 9.200798e-04	ci left: 9.518215e-01	ci right 9.526987e-01	k: 866558	n:910000
KS ci ratio: 1.528785e-01	ci left: 6.667805e-04	ci right 7.781954e-04	k: 656	n:910000
TBC1D10C   910000 perm   517 sec   (1760 perm/sec)   p_kst 7.208791e-04   p_cons 9.522615e-01   p_joint 2.474725e-03

Joint ci ratio: 6.587931e-02	ci left: 3.707369e-03	ci right 3.960988e-03	k: 3526	n:920000
Cons ci ratio: 9.146784e-04	ci left: 9.518625e-01	ci right 9.527346e-01	k: 876116	n:920000
KS ci ratio: 1.517279e-01	ci left: 6.699883e-04	ci right 7.810202e-04	k: 666	n:920000
TBC1D10C   920000 perm   527 sec   (1747 perm/sec)   p_kst 7.239130e-04   p_cons 9.523000e-01   p_joint 3.832609e-03

Joint ci ratio: 6.558269e-02	ci left: 3.701347e-03	ci right 3.953371e-03	k: 3558	n:930000
Cons ci ratio: 9.094674e-04	ci left: 9.518930e-01	ci right 9.527601e-01	k: 885665	n:930000
KS ci ratio: 1.504917e-01	ci left: 6.741650e-04	ci right 7.848968e-04	k: 677	n:930000
TBC1D10C   930000 perm   536 sec   (1734 perm/sec)   p_kst 7.279570e-04   p_cons 9.523280e-01   p_joint 3.825806e-03

Joint ci ratio: 6.347048e-02	ci left: 3.913185e-03	ci right 4.170737e-03	k: 3798	n:940000
Cons ci ratio: 9.044820e-04	ci left: 9.519089e-01	ci right 9.527713e-01	k: 895201	n:940000
KS ci ratio: 1.495026e-01	ci left: 6.762082e-04	ci right 7.864803e-04	k: 686	n:940000
TBC1D10C   940000 perm   546 sec   (1722 perm/sec)   p_kst 7.297872e-04   p_cons 9.523415e-01   p_joint 4.040426e-03

Joint ci ratio: 6.312246e-02	ci left: 3.915505e-03	ci right 4.171744e-03	k: 3840	n:950000
Cons ci ratio: 8.995254e-04	ci left: 9.519298e-01	ci right 9.527875e-01	k: 904742	n:950000
KS ci ratio: 1.486396e-01	ci left: 6.771972e-04	ci right 7.869365e-04	k: 694	n:950000
TBC1D10C   950000 perm   556 sec   (1709 perm/sec)   p_kst 7.305263e-04   p_cons 9.523600e-01   p_joint 4.042105e-03

Joint ci ratio: 6.277199e-02	ci left: 3.918805e-03	ci right 4.173785e-03	k: 3883	n:960000
Cons ci ratio: 8.949266e-04	ci left: 9.519220e-01	ci right 9.527753e-01	k: 914256	n:960000
KS ci ratio: 1.476863e-01	ci left: 6.791706e-04	ci right 7.884615e-04	k: 703	n:960000
TBC1D10C   960000 perm   566 sec   (1697 perm/sec)   p_kst 7.322917e-04   p_cons 9.523500e-01   p_joint 4.044792e-03

Joint ci ratio: 7.604468e-02	ci left: 2.628046e-03	ci right 2.836797e-03	k: 2649	n:970000
Cons ci ratio: 8.906504e-04	ci left: 9.518885e-01	ci right 9.527377e-01	k: 923745	n:970000
KS ci ratio: 1.471648e-01	ci left: 6.771333e-04	ci right 7.856777e-04	k: 708	n:970000
TBC1D10C   970000 perm   576 sec   (1685 perm/sec)   p_kst 7.298969e-04   p_cons 9.523144e-01   p_joint 2.730928e-03

Joint ci ratio: 6.216687e-02	ci left: 3.915169e-03	ci right 4.167368e-03	k: 3959	n:980000
Cons ci ratio: 8.858770e-04	ci left: 9.519131e-01	ci right 9.527577e-01	k: 933290	n:980000
KS ci ratio: 1.465461e-01	ci left: 6.761212e-04	ci right 7.840079e-04	k: 714	n:980000
TBC1D10C   980000 perm   586 sec   (1673 perm/sec)   p_kst 7.285714e-04   p_cons 9.523367e-01   p_joint 4.039796e-03

Joint ci ratio: 7.549181e-02	ci left: 2.613601e-03	ci right 2.819629e-03	k: 2688	n:990000
Cons ci ratio: 8.814735e-04	ci left: 9.519067e-01	ci right 9.527472e-01	k: 942805	n:990000
KS ci ratio: 1.458340e-01	ci left: 6.761038e-04	ci right 7.834178e-04	k: 721	n:990000
TBC1D10C   990000 perm   596 sec   (1661 perm/sec)   p_kst 7.282828e-04   p_cons 9.523283e-01   p_joint 2.715152e-03

Joint ci ratio: 7.521289e-02	ci left: 2.607087e-03	ci right 2.811810e-03	k: 2708	n:1000000
Cons ci ratio: 8.771639e-04	ci left: 9.518975e-01	ci right 9.527338e-01	k: 952317	n:1000000
KS ci ratio: 1.453318e-01	ci left: 6.741606e-04	ci right 7.807657e-04	k: 726	n:1000000
TBC1D10C   1000000 perm   606 sec   (1651 perm/sec)   p_kst 7.260000e-04   p_cons 9.523170e-01   p_joint 2.708000e-03

Joint ci ratio: 7.490953e-02	ci left: 2.602648e-03	ci right 2.806161e-03	k: 2730	n:1010000
Cons ci ratio: 8.726029e-04	ci left: 9.519213e-01	ci right 9.527533e-01	k: 961862	n:1010000
KS ci ratio: 1.448348e-01	ci left: 6.722564e-04	ci right 7.781655e-04	k: 731	n:1010000
TBC1D10C   1010000 perm   616 sec   (1640 perm/sec)   p_kst 7.237624e-04   p_cons 9.523386e-01   p_joint 2.702970e-03

Joint ci ratio: 7.465059e-02	ci left: 2.595410e-03	ci right 2.797626e-03	k: 2749	n:1020000
Cons ci ratio: 8.684404e-04	ci left: 9.519102e-01	ci right 9.527382e-01	k: 971372	n:1020000
KS ci ratio: 1.441472e-01	ci left: 6.722803e-04	ci right 7.776471e-04	k: 738	n:1020000
TBC1D10C   1020000 perm   626 sec   (1629 perm/sec)   p_kst 7.235294e-04   p_cons 9.523255e-01   p_joint 2.695098e-03

Joint ci ratio: 7.426000e-02	ci left: 2.597844e-03	ci right 2.799144e-03	k: 2778	n:1030000
Cons ci ratio: 8.640780e-04	ci left: 9.519266e-01	ci right 9.527505e-01	k: 980910	n:1030000
KS ci ratio: 1.431815e-01	ci left: 6.751132e-04	ci right 7.801545e-04	k: 748	n:1030000
TBC1D10C   1030000 perm   637 sec   (1618 perm/sec)   p_kst 7.262136e-04   p_cons 9.523398e-01   p_joint 2.697087e-03

Joint ci ratio: 7.387546e-02	ci left: 2.600233e-03	ci right 2.800630e-03	k: 2807	n:1040000
Cons ci ratio: 8.598900e-04	ci left: 9.519311e-01	ci right 9.527510e-01	k: 990436	n:1040000
KS ci ratio: 1.422350e-01	ci left: 6.778938e-04	ci right 7.826114e-04	k: 758	n:1040000
TBC1D10C   1040000 perm   647 sec   (1607 perm/sec)   p_kst 7.288462e-04   p_cons 9.523423e-01   p_joint 2.699038e-03

Joint ci ratio: 7.357490e-02	ci left: 2.596969e-03	ci right 2.796266e-03	k: 2830	n:1050000
Cons ci ratio: 8.559508e-04	ci left: 9.519155e-01	ci right 9.527316e-01	k: 999941	n:1050000
KS ci ratio: 1.416762e-01	ci left: 6.769490e-04	ci right 7.810751e-04	k: 764	n:1050000
TBC1D10C   1050000 perm   658 sec   (1596 perm/sec)   p_kst 7.276190e-04   p_cons 9.523248e-01   p_joint 2.695238e-03

Joint ci ratio: 7.312399e-02	ci left: 2.604883e-03	ci right 2.803510e-03	k: 2865	n:1060000
Cons ci ratio: 8.520563e-04	ci left: 9.519011e-01	ci right 9.527134e-01	k: 1009447	n:1060000
KS ci ratio: 1.410324e-01	ci left: 6.769329e-04	ci right 7.805436e-04	k: 771	n:1060000
TBC1D10C   1060000 perm   668 sec   (1586 perm/sec)   p_kst 7.273585e-04   p_cons 9.523085e-01   p_joint 2.702830e-03

Joint ci ratio: 7.261854e-02	ci left: 2.617241e-03	ci right 2.815373e-03	k: 2905	n:1070000
Cons ci ratio: 8.479614e-04	ci left: 9.519142e-01	ci right 9.527226e-01	k: 1018982	n:1070000
KS ci ratio: 1.401276e-01	ci left: 6.796236e-04	ci right 7.829230e-04	k: 781	n:1070000
TBC1D10C   1070000 perm   679 sec   (1575 perm/sec)   p_kst 7.299065e-04   p_cons 9.523196e-01   p_joint 2.714953e-03

Joint ci ratio: 7.526225e-02	ci left: 2.411235e-03	ci right 2.600708e-03	k: 2705	n:1080000
Cons ci ratio: 8.439765e-04	ci left: 9.519215e-01	ci right 9.527261e-01	k: 1028511	n:1080000
KS ci ratio: 1.393280e-01	ci left: 6.813729e-04	ci right 7.842982e-04	k: 790	n:1080000
TBC1D10C   1080000 perm   690 sec   (1565 perm/sec)   p_kst 7.314815e-04   p_cons 9.523250e-01   p_joint 2.504630e-03

Joint ci ratio: 7.497204e-02	ci left: 2.408018e-03	ci right 2.596476e-03	k: 2726	n:1090000
Cons ci ratio: 8.400048e-04	ci left: 9.519332e-01	ci right 9.527341e-01	k: 1038045	n:1090000
KS ci ratio: 1.386287e-01	ci left: 6.822060e-04	ci right 7.846972e-04	k: 798	n:1090000
TBC1D10C   1090000 perm   701 sec   (1554 perm/sec)   p_kst 7.321101e-04   p_cons 9.523349e-01   p_joint 2.500917e-03

Joint ci ratio: 7.457642e-02	ci left: 2.411998e-03	ci right 2.599728e-03	k: 2755	n:1100000
Cons ci ratio: 8.362980e-04	ci left: 9.519220e-01	ci right 9.527193e-01	k: 1047554	n:1100000
KS ci ratio: 1.378544e-01	ci left: 6.839030e-04	ci right 7.860282e-04	k: 807	n:1100000
TBC1D10C   1100000 perm   712 sec   (1544 perm/sec)   p_kst 7.336364e-04   p_cons 9.523218e-01   p_joint 2.504545e-03

Joint ci ratio: 7.422708e-02	ci left: 2.413256e-03	ci right 2.600166e-03	k: 2781	n:1110000
Cons ci ratio: 8.323258e-04	ci left: 9.519453e-01	ci right 9.527388e-01	k: 1057101	n:1110000
KS ci ratio: 1.373455e-01	ci left: 6.829610e-04	ci right 7.845383e-04	k: 813	n:1110000
TBC1D10C   1110000 perm   723 sec   (1535 perm/sec)   p_kst 7.324324e-04   p_cons 9.523432e-01   p_joint 2.505405e-03

Joint ci ratio: 7.386942e-02	ci left: 2.415370e-03	ci right 2.601504e-03	k: 2808	n:1120000
Cons ci ratio: 8.286378e-04	ci left: 9.519431e-01	ci right 9.527331e-01	k: 1066620	n:1120000
KS ci ratio: 1.367587e-01	ci left: 6.828989e-04	ci right 7.839976e-04	k: 820	n:1120000
TBC1D10C   1120000 perm   735 sec   (1524 perm/sec)   p_kst 7.321429e-04   p_cons 9.523393e-01   p_joint 2.507143e-03

Joint ci ratio: 7.356892e-02	ci left: 2.413973e-03	ci right 2.599211e-03	k: 2831	n:1130000
Cons ci ratio: 8.249582e-04	ci left: 9.519454e-01	ci right 9.527319e-01	k: 1076144	n:1130000
KS ci ratio: 1.362618e-01	ci left: 6.819839e-04	ci right 7.825506e-04	k: 826	n:1130000
TBC1D10C   1130000 perm   746 sec   (1515 perm/sec)   p_kst 7.309735e-04   p_cons 9.523398e-01   p_joint 2.505310e-03

Joint ci ratio: 7.373959e-02	ci left: 2.381603e-03	ci right 2.564799e-03	k: 2818	n:1140000
Cons ci ratio: 8.216049e-04	ci left: 9.519169e-01	ci right 9.527001e-01	k: 1085633	n:1140000
KS ci ratio: 1.356074e-01	ci left: 6.827805e-04	ci right 7.829421e-04	k: 834	n:1140000
TBC1D10C   1140000 perm   757 sec   (1505 perm/sec)   p_kst 7.315789e-04   p_cons 9.523096e-01   p_joint 2.471930e-03

Joint ci ratio: 7.342771e-02	ci left: 2.381379e-03	ci right 2.563750e-03	k: 2842	n:1150000
Cons ci ratio: 8.178612e-04	ci left: 9.519368e-01	ci right 9.527165e-01	k: 1095177	n:1150000
KS ci ratio: 1.350426e-01	ci left: 6.827242e-04	ci right 7.824268e-04	k: 841	n:1150000
TBC1D10C   1150000 perm   769 sec   (1496 perm/sec)   p_kst 7.313043e-04   p_cons 9.523278e-01   p_joint 2.471304e-03

Joint ci ratio: 7.310697e-02	ci left: 2.382007e-03	ci right 2.563595e-03	k: 2867	n:1160000
Cons ci ratio: 8.144231e-04	ci left: 9.519279e-01	ci right 9.527043e-01	k: 1104688	n:1160000
KS ci ratio: 1.345641e-01	ci left: 6.818366e-04	ci right 7.810286e-04	k: 847	n:1160000
TBC1D10C   1160000 perm   781 sec   (1486 perm/sec)   p_kst 7.301724e-04   p_cons 9.523172e-01   p_joint 2.471552e-03

Joint ci ratio: 7.281563e-02	ci left: 2.380947e-03	ci right 2.561701e-03	k: 2890	n:1170000
Cons ci ratio: 8.110510e-04	ci left: 9.519166e-01	ci right 9.526898e-01	k: 1114196	n:1170000
KS ci ratio: 1.339338e-01	ci left: 6.826169e-04	ci right 7.814202e-04	k: 855	n:1170000
TBC1D10C   1170000 perm   792 sec   (1477 perm/sec)   p_kst 7.307692e-04   p_cons 9.523043e-01   p_joint 2.470085e-03

Joint ci ratio: 7.241573e-02	ci left: 2.387396e-03	ci right 2.567602e-03	k: 2922	n:1180000
Cons ci ratio: 8.077579e-04	ci left: 9.519012e-01	ci right 9.526712e-01	k: 1123699	n:1180000
KS ci ratio: 1.331581e-01	ci left: 6.850235e-04	ci right 7.835555e-04	k: 865	n:1180000
TBC1D10C   1180000 perm   804 sec   (1468 perm/sec)   p_kst 7.330508e-04   p_cons 9.522873e-01   p_joint 2.476271e-03

Joint ci ratio: 7.197353e-02	ci left: 2.397041e-03	ci right 2.576823e-03	k: 2958	n:1190000
Cons ci ratio: 8.042517e-04	ci left: 9.519147e-01	ci right 9.526814e-01	k: 1133236	n:1190000
KS ci ratio: 1.324714e-01	ci left: 6.865788e-04	ci right 7.847851e-04	k: 874	n:1190000
TBC1D10C   1190000 perm   816 sec   (1459 perm/sec)   p_kst 7.344538e-04   p_cons 9.522992e-01   p_joint 2.485714e-03

Joint ci ratio: 7.167139e-02	ci left: 2.397524e-03	ci right 2.576557e-03	k: 2983	n:1200000
Cons ci ratio: 8.009303e-04	ci left: 9.519121e-01	ci right 9.526757e-01	k: 1142754	n:1200000
KS ci ratio: 1.320947e-01	ci left: 6.848860e-04	ci right 7.825497e-04	k: 879	n:1200000
TBC1D10C   1200000 perm   827 sec   (1450 perm/sec)   p_kst 7.325000e-04   p_cons 9.522950e-01   p_joint 2.485833e-03

Joint ci ratio: 7.131365e-02	ci left: 2.402061e-03	ci right 2.580500e-03	k: 3013	n:1210000
Cons ci ratio: 7.978020e-04	ci left: 9.518922e-01	ci right 9.526527e-01	k: 1152251	n:1210000
KS ci ratio: 1.314983e-01	ci left: 6.856194e-04	ci right 7.829118e-04	k: 887	n:1210000
TBC1D10C   1210000 perm   839 sec   (1441 perm/sec)   p_kst 7.330579e-04   p_cons 9.522736e-01   p_joint 2.490083e-03

Joint ci ratio: 7.099630e-02	ci left: 2.404109e-03	ci right 2.581873e-03	k: 3040	n:1220000
Cons ci ratio: 7.943660e-04	ci left: 9.519121e-01	ci right 9.526694e-01	k: 1161796	n:1220000
KS ci ratio: 1.310563e-01	ci left: 6.847561e-04	ci right 7.815740e-04	k: 893	n:1220000
TBC1D10C   1220000 perm   852 sec   (1433 perm/sec)   p_kst 7.319672e-04   p_cons 9.522918e-01   p_joint 2.491803e-03

Joint ci ratio: 7.057945e-02	ci left: 2.413314e-03	ci right 2.590668e-03	k: 3076	n:1230000
Cons ci ratio: 7.912075e-04	ci left: 9.519047e-01	ci right 9.526590e-01	k: 1171308	n:1230000
KS ci ratio: 1.301853e-01	ci left: 6.886263e-04	ci right 7.852943e-04	k: 905	n:1230000
TBC1D10C   1230000 perm   864 sec   (1424 perm/sec)   p_kst 7.357724e-04   p_cons 9.522829e-01   p_joint 2.500813e-03

Joint ci ratio: 7.039691e-02	ci left: 2.406527e-03	ci right 2.582906e-03	k: 3092	n:1240000
Cons ci ratio: 7.879046e-04	ci left: 9.519186e-01	ci right 9.526697e-01	k: 1180846	n:1240000
KS ci ratio: 1.298276e-01	ci left: 6.869740e-04	ci right 7.831247e-04	k: 910	n:1240000
TBC1D10C   1240000 perm   876 sec   (1415 perm/sec)   p_kst 7.338710e-04   p_cons 9.522952e-01   p_joint 2.493548e-03

Joint ci ratio: 7.013668e-02	ci left: 2.405352e-03	ci right 2.580966e-03	k: 3115	n:1250000
Cons ci ratio: 7.845044e-04	ci left: 9.519482e-01	ci right 9.526961e-01	k: 1190404	n:1250000
KS ci ratio: 1.296856e-01	ci left: 6.830262e-04	ci right 7.785117e-04	k: 912	n:1250000
TBC1D10C   1250000 perm   888 sec   (1407 perm/sec)   p_kst 7.296000e-04   p_cons 9.523232e-01   p_joint 2.492000e-03

Joint ci ratio: 6.975688e-02	ci left: 2.412774e-03	ci right 2.587938e-03	k: 3149	n:1260000
Cons ci ratio: 7.816188e-04	ci left: 9.519224e-01	ci right 9.526675e-01	k: 1199893	n:1260000
KS ci ratio: 1.287023e-01	ci left: 6.883575e-04	ci right 7.838029e-04	k: 926	n:1260000
TBC1D10C   1260000 perm   901 sec   (1399 perm/sec)   p_kst 7.349206e-04   p_cons 9.522960e-01   p_joint 2.499206e-03

Joint ci ratio: 6.950366e-02	ci left: 2.411571e-03	ci right 2.585986e-03	k: 3172	n:1270000
Cons ci ratio: 7.786363e-04	ci left: 9.519121e-01	ci right 9.526543e-01	k: 1209401	n:1270000
KS ci ratio: 1.283567e-01	ci left: 6.867477e-04	ci right 7.816948e-04	k: 931	n:1270000
TBC1D10C   1270000 perm   913 sec   (1391 perm/sec)   p_kst 7.330709e-04   p_cons 9.522843e-01   p_joint 2.497638e-03

Joint ci ratio: 6.929665e-02	ci left: 2.407316e-03	ci right 2.580885e-03	k: 3191	n:1280000
Cons ci ratio: 7.756277e-04	ci left: 9.519090e-01	ci right 9.526484e-01	k: 1218918	n:1280000
KS ci ratio: 1.281508e-01	ci left: 6.836510e-04	ci right 7.780068e-04	k: 934	n:1280000
TBC1D10C   1280000 perm   926 sec   (1382 perm/sec)   p_kst 7.296875e-04   p_cons 9.522797e-01   p_joint 2.492969e-03

Joint ci ratio: 6.904839e-02	ci left: 2.406176e-03	ci right 2.579016e-03	k: 3214	n:1290000
Cons ci ratio: 7.726603e-04	ci left: 9.519051e-01	ci right 9.526417e-01	k: 1228434	n:1290000
KS ci ratio: 1.278097e-01	ci left: 6.821032e-04	ci right 7.759758e-04	k: 939	n:1290000
TBC1D10C   1290000 perm   939 sec   (1374 perm/sec)   p_kst 7.279070e-04   p_cons 9.522744e-01   p_joint 2.491473e-03

Joint ci ratio: 6.873896e-02	ci left: 2.409590e-03	ci right 2.581869e-03	k: 3243	n:1300000
Cons ci ratio: 7.696029e-04	ci left: 9.519160e-01	ci right 9.526497e-01	k: 1237969	n:1300000
KS ci ratio: 1.272692e-01	ci left: 6.828138e-04	ci right 7.763568e-04	k: 947	n:1300000
TBC1D10C   1300000 perm   951 sec   (1367 perm/sec)   p_kst 7.284615e-04   p_cons 9.522838e-01   p_joint 2.494615e-03

Joint ci ratio: 6.852817e-02	ci left: 2.406202e-03	ci right 2.577689e-03	k: 3263	n:1310000
Cons ci ratio: 7.665493e-04	ci left: 9.519306e-01	ci right 9.526613e-01	k: 1247509	n:1310000
KS ci ratio: 1.268019e-01	ci left: 6.827752e-04	ci right 7.759436e-04	k: 954	n:1310000
TBC1D10C   1310000 perm   964 sec   (1358 perm/sec)   p_kst 7.282443e-04   p_cons 9.522969e-01   p_joint 2.490840e-03

Joint ci ratio: 6.827763e-02	ci left: 2.405844e-03	ci right 2.576654e-03	k: 3287	n:1320000
Cons ci ratio: 7.637100e-04	ci left: 9.519236e-01	ci right 9.526516e-01	k: 1257021	n:1320000
KS ci ratio: 1.263398e-01	ci left: 6.827377e-04	ci right 7.755361e-04	k: 961	n:1320000
TBC1D10C   1320000 perm   977 sec   (1351 perm/sec)   p_kst 7.280303e-04   p_cons 9.522886e-01   p_joint 2.490152e-03

Joint ci ratio: 6.801953e-02	ci left: 2.406231e-03	ci right 2.576398e-03	k: 3312	n:1330000
Cons ci ratio: 7.608517e-04	ci left: 9.519228e-01	ci right 9.526481e-01	k: 1266541	n:1330000
KS ci ratio: 1.259477e-01	ci left: 6.819733e-04	ci right 7.743586e-04	k: 967	n:1330000
TBC1D10C   1330000 perm   990 sec   (1343 perm/sec)   p_kst 7.270677e-04   p_cons 9.522865e-01   p_joint 2.490226e-03

Joint ci ratio: 6.780507e-02	ci left: 2.403680e-03	ci right 2.573109e-03	k: 3333	n:1340000
Cons ci ratio: 7.581372e-04	ci left: 9.519086e-01	ci right 9.526313e-01	k: 1276043	n:1340000
KS ci ratio: 1.253661e-01	ci left: 6.833893e-04	ci right 7.755072e-04	k: 976	n:1340000
TBC1D10C   1340000 perm   1003 sec   (1335 perm/sec)   p_kst 7.283582e-04   p_cons 9.522709e-01   p_joint 2.487313e-03

Joint ci ratio: 6.753212e-02	ci left: 2.405536e-03	ci right 2.574387e-03	k: 3360	n:1350000
Cons ci ratio: 7.552791e-04	ci left: 9.519153e-01	ci right 9.526353e-01	k: 1285573	n:1350000
KS ci ratio: 1.247926e-01	ci left: 6.847852e-04	ci right 7.766378e-04	k: 985	n:1350000
TBC1D10C   1350000 perm   1016 sec   (1328 perm/sec)   p_kst 7.296296e-04   p_cons 9.522763e-01   p_joint 2.488889e-03

Joint ci ratio: 6.720281e-02	ci left: 2.411705e-03	ci right 2.580131e-03	k: 3393	n:1360000
Cons ci ratio: 7.524836e-04	ci left: 9.519183e-01	ci right 9.526356e-01	k: 1295098	n:1360000
KS ci ratio: 1.243520e-01	ci left: 6.847367e-04	ci right 7.762346e-04	k: 992	n:1360000
TBC1D10C   1360000 perm   1030 sec   (1321 perm/sec)   p_kst 7.294118e-04   p_cons 9.522779e-01   p_joint 2.494853e-03

Joint ci ratio: 6.697630e-02	ci left: 2.410608e-03	ci right 2.578368e-03	k: 3416	n:1370000
Cons ci ratio: 7.498754e-04	ci left: 9.519022e-01	ci right 9.526170e-01	k: 1304597	n:1370000
KS ci ratio: 1.240402e-01	ci left: 6.832749e-04	ci right 7.743317e-04	k: 997	n:1370000
TBC1D10C   1370000 perm   1043 sec   (1314 perm/sec)   p_kst 7.277372e-04   p_cons 9.522606e-01   p_joint 2.493431e-03

Joint ci ratio: 6.678127e-02	ci left: 2.407390e-03	ci right 2.574419e-03	k: 3436	n:1380000
Cons ci ratio: 7.470142e-04	ci left: 9.519205e-01	ci right 9.526326e-01	k: 1314143	n:1380000
KS ci ratio: 1.236075e-01	ci left: 6.832389e-04	ci right 7.739501e-04	k: 1004	n:1380000
TBC1D10C   1380000 perm   1056 sec   (1307 perm/sec)   p_kst 7.275362e-04   p_cons 9.522775e-01   p_joint 2.489855e-03

Joint ci ratio: 6.654934e-02	ci left: 2.407049e-03	ci right 2.573452e-03	k: 3460	n:1390000
Cons ci ratio: 7.443916e-04	ci left: 9.519133e-01	ci right 9.526229e-01	k: 1323654	n:1390000
KS ci ratio: 1.230576e-01	ci left: 6.845986e-04	ci right 7.750565e-04	k: 1013	n:1390000
TBC1D10C   1390000 perm   1069 sec   (1300 perm/sec)   p_kst 7.287770e-04   p_cons 9.522691e-01   p_joint 2.489209e-03

Joint ci ratio: 6.628169e-02	ci left: 2.409524e-03	ci right 2.575402e-03	k: 3488	n:1400000
Cons ci ratio: 7.415749e-04	ci left: 9.519335e-01	ci right 9.526404e-01	k: 1333203	n:1400000
KS ci ratio: 1.227554e-01	ci left: 6.831702e-04	ci right 7.732016e-04	k: 1018	n:1400000
TBC1D10C   1400000 perm   1083 sec   (1293 perm/sec)   p_kst 7.271429e-04   p_cons 9.522879e-01   p_joint 2.491429e-03

Joint ci ratio: 6.611154e-02	ci left: 2.404989e-03	ci right 2.570114e-03	k: 3506	n:1410000
Cons ci ratio: 7.390493e-04	ci left: 9.519213e-01	ci right 9.526258e-01	k: 1342707	n:1410000
KS ci ratio: 1.225753e-01	ci left: 6.803874e-04	ci right 7.699109e-04	k: 1021	n:1410000
TBC1D10C   1410000 perm   1097 sec   (1286 perm/sec)   p_kst 7.241135e-04   p_cons 9.522745e-01   p_joint 2.486525e-03

Joint ci ratio: 6.589585e-02	ci left: 2.403983e-03	ci right 2.568480e-03	k: 3529	n:1420000
Cons ci ratio: 7.364695e-04	ci left: 9.519192e-01	ci right 9.526212e-01	k: 1352225	n:1420000
KS ci ratio: 1.218028e-01	ci left: 6.844711e-04	ci right 7.739235e-04	k: 1034	n:1420000
TBC1D10C   1420000 perm   1110 sec   (1279 perm/sec)   p_kst 7.281690e-04   p_cons 9.522711e-01   p_joint 2.485211e-03

Joint ci ratio: 6.567300e-02	ci left: 2.403679e-03	ci right 2.567577e-03	k: 3553	n:1430000
Cons ci ratio: 7.338939e-04	ci left: 9.519199e-01	ci right 9.526195e-01	k: 1361747	n:1430000
KS ci ratio: 1.214514e-01	ci left: 6.837527e-04	ci right 7.728349e-04	k: 1040	n:1430000
TBC1D10C   1430000 perm   1124 sec   (1272 perm/sec)   p_kst 7.272727e-04   p_cons 9.522706e-01   p_joint 2.484615e-03

Joint ci ratio: 6.543406e-02	ci left: 2.404746e-03	ci right 2.568098e-03	k: 3579	n:1440000
Cons ci ratio: 7.313340e-04	ci left: 9.519221e-01	ci right 9.526192e-01	k: 1371271	n:1440000
KS ci ratio: 1.208721e-01	ci left: 6.857385e-04	ci right 7.746227e-04	k: 1050	n:1440000
TBC1D10C   1440000 perm   1138 sec   (1265 perm/sec)   p_kst 7.291667e-04   p_cons 9.522715e-01   p_joint 2.485417e-03

Joint ci ratio: 6.521585e-02	ci left: 2.404443e-03	ci right 2.567210e-03	k: 3603	n:1450000
Cons ci ratio: 7.287508e-04	ci left: 9.519304e-01	ci right 9.526250e-01	k: 1380804	n:1450000
KS ci ratio: 1.203578e-01	ci left: 6.870289e-04	ci right 7.756746e-04	k: 1059	n:1450000
TBC1D10C   1450000 perm   1153 sec   (1258 perm/sec)   p_kst 7.303448e-04   p_cons 9.522786e-01   p_joint 2.484828e-03

Joint ci ratio: 6.502676e-02	ci left: 2.402123e-03	ci right 2.564244e-03	k: 3624	n:1460000
Cons ci ratio: 7.264029e-04	ci left: 9.519125e-01	ci right 9.526049e-01	k: 1390299	n:1460000
KS ci ratio: 1.201315e-01	ci left: 6.849805e-04	ci right 7.731839e-04	k: 1063	n:1460000
TBC1D10C   1460000 perm   1167 sec   (1251 perm/sec)   p_kst 7.280822e-04   p_cons 9.522596e-01   p_joint 2.482192e-03

Joint ci ratio: 6.480368e-02	ci left: 2.402513e-03	ci right 2.564083e-03	k: 3649	n:1470000
Cons ci ratio: 7.238390e-04	ci left: 9.519249e-01	ci right 9.526148e-01	k: 1399838	n:1470000
KS ci ratio: 1.195708e-01	ci left: 6.869196e-04	ci right 7.749306e-04	k: 1073	n:1470000
TBC1D10C   1470000 perm   1181 sec   (1245 perm/sec)   p_kst 7.299320e-04   p_cons 9.522707e-01   p_joint 2.482313e-03

Joint ci ratio: 6.456527e-02	ci left: 2.404228e-03	ci right 2.565296e-03	k: 3676	n:1480000
Cons ci ratio: 7.212592e-04	ci left: 9.519425e-01	ci right 9.526300e-01	k: 1409385	n:1480000
KS ci ratio: 1.191279e-01	ci left: 6.875223e-04	ci right 7.752613e-04	k: 1081	n:1480000
TBC1D10C   1480000 perm   1195 sec   (1238 perm/sec)   p_kst 7.304054e-04   p_cons 9.522872e-01   p_joint 2.483784e-03

Joint ci ratio: 6.432076e-02	ci left: 2.406582e-03	ci right 2.567174e-03	k: 3704	n:1490000
Cons ci ratio: 7.189721e-04	ci left: 9.519263e-01	ci right 9.526116e-01	k: 1418882	n:1490000
KS ci ratio: 1.186899e-01	ci left: 6.881175e-04	ci right 7.755869e-04	k: 1089	n:1490000
TBC1D10C   1490000 perm   1210 sec   (1232 perm/sec)   p_kst 7.308725e-04   p_cons 9.522698e-01   p_joint 2.485906e-03

Joint ci ratio: 6.412208e-02	ci left: 2.405625e-03	ci right 2.565639e-03	k: 3727	n:1500000
Cons ci ratio: 7.167118e-04	ci left: 9.519096e-01	ci right 9.525927e-01	k: 1428378	n:1500000
KS ci ratio: 1.182028e-01	ci left: 6.893523e-04	ci right 7.765940e-04	k: 1098	n:1500000
TBC1D10C   1500000 perm   1224 sec   (1225 perm/sec)   p_kst 7.320000e-04   p_cons 9.522520e-01   p_joint 2.484667e-03

Joint ci ratio: 6.389109e-02	ci left: 2.407288e-03	ci right 2.566815e-03	k: 3754	n:1510000
Cons ci ratio: 7.144517e-04	ci left: 9.518957e-01	ci right 9.525767e-01	k: 1437878	n:1510000
KS ci ratio: 1.178815e-01	ci left: 6.886432e-04	ci right 7.755418e-04	k: 1104	n:1510000
TBC1D10C   1510000 perm   1239 sec   (1219 perm/sec)   p_kst 7.311258e-04   p_cons 9.522371e-01   p_joint 2.486093e-03

Joint ci ratio: 6.371326e-02	ci left: 2.405046e-03	ci right 2.563964e-03	k: 3775	n:1520000
Cons ci ratio: 7.118369e-04	ci left: 9.519303e-01	ci right 9.526088e-01	k: 1447451	n:1520000
KS ci ratio: 1.176689e-01	ci left: 6.866667e-04	ci right 7.731487e-04	k: 1108	n:1520000
TBC1D10C   1520000 perm   1253 sec   (1213 perm/sec)   p_kst 7.289474e-04   p_cons 9.522704e-01   p_joint 2.483553e-03

Joint ci ratio: 6.349501e-02	ci left: 2.406050e-03	ci right 2.564470e-03	k: 3801	n:1530000
Cons ci ratio: 7.094338e-04	ci left: 9.519408e-01	ci right 9.526170e-01	k: 1456988	n:1530000
KS ci ratio: 1.171418e-01	ci left: 6.885227e-04	ci right 7.748232e-04	k: 1118	n:1530000
TBC1D10C   1530000 perm   1268 sec   (1207 perm/sec)   p_kst 7.307190e-04   p_cons 9.522797e-01   p_joint 2.484314e-03

Joint ci ratio: 6.332046e-02	ci left: 2.403847e-03	ci right 2.561670e-03	k: 3822	n:1540000
Cons ci ratio: 7.071964e-04	ci left: 9.519329e-01	ci right 9.526070e-01	k: 1466497	n:1540000
KS ci ratio: 1.166218e-01	ci left: 6.903555e-04	ci right 7.764751e-04	k: 1128	n:1540000
TBC1D10C   1540000 perm   1282 sec   (1201 perm/sec)   p_kst 7.324675e-04   p_cons 9.522708e-01   p_joint 2.481818e-03

Joint ci ratio: 6.312265e-02	ci left: 2.403577e-03	ci right 2.560872e-03	k: 3846	n:1550000
Cons ci ratio: 7.049500e-04	ci left: 9.519290e-01	ci right 9.526009e-01	k: 1476012	n:1550000
KS ci ratio: 1.163132e-01	ci left: 6.896598e-04	ci right 7.754493e-04	k: 1134	n:1550000
TBC1D10C   1550000 perm   1297 sec   (1195 perm/sec)   p_kst 7.316129e-04   p_cons 9.522658e-01   p_joint 2.481290e-03

Joint ci ratio: 6.291854e-02	ci left: 2.403943e-03	ci right 2.560734e-03	k: 3871	n:1560000
Cons ci ratio: 7.026951e-04	ci left: 9.519290e-01	ci right 9.525988e-01	k: 1485533	n:1560000
KS ci ratio: 1.159054e-01	ci left: 6.902182e-04	ci right 7.757555e-04	k: 1142	n:1560000
TBC1D10C   1560000 perm   1312 sec   (1189 perm/sec)   p_kst 7.320513e-04   p_cons 9.522647e-01   p_joint 2.481410e-03

Joint ci ratio: 6.270833e-02	ci left: 2.404931e-03	ci right 2.561244e-03	k: 3897	n:1570000
Cons ci ratio: 7.005304e-04	ci left: 9.519201e-01	ci right 9.525878e-01	k: 1495040	n:1570000
KS ci ratio: 1.156024e-01	ci left: 6.895329e-04	ci right 7.747466e-04	k: 1148	n:1570000
TBC1D10C   1570000 perm   1327 sec   (1183 perm/sec)   p_kst 7.312102e-04   p_cons 9.522548e-01   p_joint 2.482166e-03

Joint ci ratio: 6.246033e-02	ci left: 2.409024e-03	ci right 2.564961e-03	k: 3928	n:1580000
Cons ci ratio: 6.983321e-04	ci left: 9.519183e-01	ci right 9.525839e-01	k: 1504558	n:1580000
KS ci ratio: 1.152519e-01	ci left: 6.894712e-04	ci right 7.744014e-04	k: 1155	n:1580000
TBC1D10C   1580000 perm   1342 sec   (1177 perm/sec)   p_kst 7.310127e-04   p_cons 9.522519e-01   p_joint 2.486076e-03

Joint ci ratio: 6.231788e-02	ci left: 2.405016e-03	ci right 2.560327e-03	k: 3946	n:1590000
Cons ci ratio: 6.961062e-04	ci left: 9.519228e-01	ci right 9.525863e-01	k: 1514086	n:1590000
KS ci ratio: 1.150035e-01	ci left: 6.881890e-04	ci right 7.727662e-04	k: 1160	n:1590000
TBC1D10C   1590000 perm   1358 sec   (1171 perm/sec)   p_kst 7.295597e-04   p_cons 9.522553e-01   p_joint 2.481761e-03

Joint ci ratio: 6.213713e-02	ci left: 2.404136e-03	ci right 2.558923e-03	k: 3969	n:1600000
Cons ci ratio: 6.939443e-04	ci left: 9.519216e-01	ci right 9.525830e-01	k: 1523605	n:1600000
KS ci ratio: 1.147076e-01	ci left: 6.875301e-04	ci right 7.717941e-04	k: 1166	n:1600000
TBC1D10C   1600000 perm   1373 sec   (1165 perm/sec)   p_kst 7.287500e-04   p_cons 9.522531e-01   p_joint 2.480625e-03

Joint ci ratio: 6.198130e-02	ci left: 2.401433e-03	ci right 2.555644e-03	k: 3989	n:1610000
Cons ci ratio: 6.915852e-04	ci left: 9.519491e-01	ci right 9.526083e-01	k: 1533170	n:1610000
KS ci ratio: 1.145606e-01	ci left: 6.850696e-04	ci right 7.689172e-04	k: 1169	n:1610000
TBC1D10C   1610000 perm   1388 sec   (1160 perm/sec)   p_kst 7.260870e-04   p_cons 9.522795e-01   p_joint 2.477640e-03

Joint ci ratio: 6.171103e-02	ci left: 2.407881e-03	ci right 2.561808e-03	k: 4024	n:1620000
Cons ci ratio: 6.894323e-04	ci left: 9.519521e-01	ci right 9.526092e-01	k: 1542696	n:1620000
KS ci ratio: 1.141224e-01	ci left: 6.862374e-04	ci right 7.698851e-04	k: 1178	n:1620000
TBC1D10C   1620000 perm   1404 sec   (1154 perm/sec)   p_kst 7.271605e-04   p_cons 9.522815e-01   p_joint 2.483951e-03

Joint ci ratio: 6.156600e-02	ci left: 2.404585e-03	ci right 2.557927e-03	k: 4043	n:1630000
Cons ci ratio: 6.874850e-04	ci left: 9.519305e-01	ci right 9.525857e-01	k: 1552182	n:1630000
KS ci ratio: 1.139776e-01	ci left: 6.838153e-04	ci right 7.670549e-04	k: 1181	n:1630000
TBC1D10C   1630000 perm   1420 sec   (1148 perm/sec)   p_kst 7.245399e-04   p_cons 9.522589e-01   p_joint 2.480368e-03

Joint ci ratio: 6.133126e-02	ci left: 2.408535e-03	ci right 2.561523e-03	k: 4074	n:1640000
Cons ci ratio: 6.854161e-04	ci left: 9.519274e-01	ci right 9.525807e-01	k: 1561698	n:1640000
KS ci ratio: 1.136416e-01	ci left: 6.837925e-04	ci right 7.667675e-04	k: 1188	n:1640000
TBC1D10C   1640000 perm   1435 sec   (1143 perm/sec)   p_kst 7.243902e-04   p_cons 9.522549e-01   p_joint 2.484146e-03

Joint ci ratio: 6.114399e-02	ci left: 2.408858e-03	ci right 2.561382e-03	k: 4099	n:1650000
Cons ci ratio: 6.834021e-04	ci left: 9.519196e-01	ci right 9.525709e-01	k: 1571206	n:1650000
KS ci ratio: 1.132612e-01	ci left: 6.843592e-04	ci right 7.671064e-04	k: 1196	n:1650000
TBC1D10C   1650000 perm   1451 sec   (1137 perm/sec)   p_kst 7.248485e-04   p_cons 9.522461e-01   p_joint 2.484242e-03

Joint ci ratio: 6.094361e-02	ci left: 2.410363e-03	ci right 2.562465e-03	k: 4126	n:1660000
Cons ci ratio: 6.813110e-04	ci left: 9.519245e-01	ci right 9.525739e-01	k: 1580735	n:1660000
KS ci ratio: 1.128846e-01	ci left: 6.849196e-04	ci right 7.674408e-04	k: 1204	n:1660000
TBC1D10C   1660000 perm   1467 sec   (1132 perm/sec)   p_kst 7.253012e-04   p_cons 9.522500e-01   p_joint 2.485542e-03

Joint ci ratio: 6.075252e-02	ci left: 2.411262e-03	ci right 2.562927e-03	k: 4152	n:1670000
Cons ci ratio: 6.793151e-04	ci left: 9.519192e-01	ci right 9.525667e-01	k: 1590247	n:1670000
KS ci ratio: 1.127912e-01	ci left: 6.819820e-04	ci right 7.640768e-04	k: 1206	n:1670000
TBC1D10C   1670000 perm   1482 sec   (1127 perm/sec)   p_kst 7.221557e-04   p_cons 9.522437e-01   p_joint 2.486228e-03

Joint ci ratio: 6.061413e-02	ci left: 2.408047e-03	ci right 2.559152e-03	k: 4171	n:1680000
Cons ci ratio: 6.771991e-04	ci left: 9.519324e-01	ci right 9.525779e-01	k: 1599790	n:1680000
KS ci ratio: 1.126515e-01	ci left: 6.796579e-04	ci right 7.613648e-04	k: 1209	n:1680000
TBC1D10C   1680000 perm   1498 sec   (1121 perm/sec)   p_kst 7.196429e-04   p_cons 9.522560e-01   p_joint 2.482738e-03

Joint ci ratio: 6.040448e-02	ci left: 2.410698e-03	ci right 2.561429e-03	k: 4200	n:1690000
Cons ci ratio: 6.750676e-04	ci left: 9.519503e-01	ci right 9.525937e-01	k: 1609341	n:1690000
KS ci ratio: 1.122809e-01	ci left: 6.802368e-04	ci right 7.617265e-04	k: 1217	n:1690000
TBC1D10C   1690000 perm   1515 sec   (1116 perm/sec)   p_kst 7.201183e-04   p_cons 9.522728e-01   p_joint 2.485207e-03

Joint ci ratio: 6.019699e-02	ci left: 2.413320e-03	ci right 2.563677e-03	k: 4229	n:1700000
Cons ci ratio: 6.729299e-04	ci left: 9.519715e-01	ci right 9.526129e-01	k: 1618898	n:1700000
KS ci ratio: 1.117771e-01	ci left: 6.825248e-04	ci right 7.638976e-04	k: 1228	n:1700000
TBC1D10C   1700000 perm   1531 sec   (1111 perm/sec)   p_kst 7.223529e-04   p_cons 9.522929e-01   p_joint 2.487647e-03

Joint ci ratio: 6.001988e-02	ci left: 2.413607e-03	ci right 2.563525e-03	k: 4254	n:1710000
Cons ci ratio: 6.709763e-04	ci left: 9.519701e-01	ci right 9.526096e-01	k: 1628417	n:1710000
KS ci ratio: 1.113700e-01	ci left: 6.836497e-04	ci right 7.648403e-04	k: 1237	n:1710000
TBC1D10C   1710000 perm   1547 sec   (1106 perm/sec)   p_kst 7.233918e-04   p_cons 9.522906e-01   p_joint 2.487719e-03

Joint ci ratio: 5.984433e-02	ci left: 2.413891e-03	ci right 2.563373e-03	k: 4279	n:1720000
Cons ci ratio: 6.689155e-04	ci left: 9.519857e-01	ci right 9.526233e-01	k: 1637965	n:1720000
KS ci ratio: 1.110565e-01	ci left: 6.836315e-04	ci right 7.645765e-04	k: 1244	n:1720000
TBC1D10C   1720000 perm   1563 sec   (1101 perm/sec)   p_kst 7.232558e-04   p_cons 9.523052e-01   p_joint 2.487791e-03

Joint ci ratio: 5.973991e-02	ci left: 2.408479e-03	ci right 2.557356e-03	k: 4294	n:1730000
Cons ci ratio: 6.670306e-04	ci left: 9.519796e-01	ci right 9.526154e-01	k: 1647476	n:1730000
KS ci ratio: 1.107456e-01	ci left: 6.836139e-04	ci right 7.643154e-04	k: 1251	n:1730000
TBC1D10C   1730000 perm   1579 sec   (1096 perm/sec)   p_kst 7.231214e-04   p_cons 9.522983e-01   p_joint 2.482081e-03

Joint ci ratio: 5.958063e-02	ci left: 2.407658e-03	ci right 2.556074e-03	k: 4317	n:1740000
Cons ci ratio: 6.651740e-04	ci left: 9.519719e-01	ci right 9.526059e-01	k: 1656984	n:1740000
KS ci ratio: 1.103059e-01	ci left: 6.852734e-04	ci right 7.658287e-04	k: 1261	n:1740000
TBC1D10C   1740000 perm   1595 sec   (1091 perm/sec)   p_kst 7.247126e-04   p_cons 9.522897e-01   p_joint 2.481034e-03

Joint ci ratio: 5.948446e-02	ci left: 2.401781e-03	ci right 2.549588e-03	k: 4331	n:1750000
Cons ci ratio: 6.633371e-04	ci left: 9.519637e-01	ci right 9.525959e-01	k: 1666491	n:1750000
KS ci ratio: 1.100446e-01	ci left: 6.846916e-04	ci right 7.649755e-04	k: 1267	n:1750000
TBC1D10C   1750000 perm   1612 sec   (1086 perm/sec)   p_kst 7.240000e-04   p_cons 9.522806e-01   p_joint 2.474857e-03

Joint ci ratio: 5.927946e-02	ci left: 2.404927e-03	ci right 2.552400e-03	k: 4361	n:1760000
Cons ci ratio: 6.615318e-04	ci left: 9.519533e-01	ci right 9.525838e-01	k: 1675994	n:1760000
KS ci ratio: 1.096561e-01	ci left: 6.857745e-04	ci right 7.658831e-04	k: 1276	n:1760000
TBC1D10C   1760000 perm   1628 sec   (1081 perm/sec)   p_kst 7.250000e-04   p_cons 9.522693e-01   p_joint 2.477841e-03

Joint ci ratio: 5.913058e-02	ci left: 2.403585e-03	ci right 2.550593e-03	k: 4383	n:1770000
Cons ci ratio: 6.595690e-04	ci left: 9.519669e-01	ci right 9.525955e-01	k: 1685539	n:1770000
KS ci ratio: 1.094421e-01	ci left: 6.846475e-04	ci right 7.644584e-04	k: 1281	n:1770000
TBC1D10C   1770000 perm   1645 sec   (1076 perm/sec)   p_kst 7.237288e-04   p_cons 9.522819e-01   p_joint 2.476271e-03

Joint ci ratio: 5.896940e-02	ci left: 2.403366e-03	ci right 2.549946e-03	k: 4407	n:1780000
Cons ci ratio: 6.576763e-04	ci left: 9.519729e-01	ci right 9.525998e-01	k: 1695071	n:1780000
KS ci ratio: 1.090177e-01	ci left: 6.862657e-04	ci right 7.659350e-04	k: 1291	n:1780000
TBC1D10C   1780000 perm   1662 sec   (1071 perm/sec)   p_kst 7.252809e-04   p_cons 9.522871e-01   p_joint 2.475843e-03

Joint ci ratio: 5.874314e-02	ci left: 2.408654e-03	ci right 2.554974e-03	k: 4441	n:1790000
Cons ci ratio: 6.558401e-04	ci left: 9.519733e-01	ci right 9.525984e-01	k: 1704593	n:1790000
KS ci ratio: 1.083901e-01	ci left: 6.905839e-04	ci right 7.702636e-04	k: 1306	n:1790000
TBC1D10C   1790000 perm   1679 sec   (1066 perm/sec)   p_kst 7.296089e-04   p_cons 9.522866e-01   p_joint 2.481006e-03

Joint ci ratio: 5.853912e-02	ci left: 2.412243e-03	ci right 2.558254e-03	k: 4472	n:1800000
Cons ci ratio: 6.540752e-04	ci left: 9.519659e-01	ci right 9.525893e-01	k: 1714101	n:1800000
KS ci ratio: 1.080599e-01	ci left: 6.910715e-04	ci right 7.705490e-04	k: 1314	n:1800000
TBC1D10C   1800000 perm   1695 sec   (1062 perm/sec)   p_kst 7.300000e-04   p_cons 9.522783e-01   p_joint 2.484444e-03

Joint ci ratio: 5.835021e-02	ci left: 2.414703e-03	ci right 2.560376e-03	k: 4501	n:1810000
Cons ci ratio: 6.523245e-04	ci left: 9.519586e-01	ci right 9.525803e-01	k: 1723609	n:1810000
KS ci ratio: 1.077734e-01	ci left: 6.910165e-04	ci right 7.702636e-04	k: 1321	n:1810000
TBC1D10C   1810000 perm   1712 sec   (1057 perm/sec)   p_kst 7.298343e-04   p_cons 9.522702e-01   p_joint 2.486740e-03

Joint ci ratio: 5.820176e-02	ci left: 2.413889e-03	ci right 2.559130e-03	k: 4524	n:1820000
Cons ci ratio: 6.505523e-04	ci left: 9.519563e-01	ci right 9.525763e-01	k: 1733126	n:1820000
KS ci ratio: 1.075297e-01	ci left: 6.904276e-04	ci right 7.694168e-04	k: 1327	n:1820000
TBC1D10C   1820000 perm   1729 sec   (1053 perm/sec)   p_kst 7.291209e-04   p_cons 9.522670e-01   p_joint 2.485714e-03

Joint ci ratio: 5.803525e-02	ci left: 2.414700e-03	ci right 2.559560e-03	k: 4550	n:1830000
Cons ci ratio: 6.488140e-04	ci left: 9.519513e-01	ci right 9.525697e-01	k: 1742638	n:1830000
KS ci ratio: 1.071270e-01	ci left: 6.919726e-04	ci right 7.708235e-04	k: 1337	n:1830000
TBC1D10C   1830000 perm   1746 sec   (1048 perm/sec)   p_kst 7.306011e-04   p_cons 9.522612e-01   p_joint 2.486339e-03

Joint ci ratio: 5.786382e-02	ci left: 2.416038e-03	ci right 2.560535e-03	k: 4577	n:1840000
Cons ci ratio: 6.469967e-04	ci left: 9.519594e-01	ci right 9.525761e-01	k: 1752174	n:1840000
KS ci ratio: 1.066497e-01	ci left: 6.945593e-04	ci right 7.733302e-04	k: 1349	n:1840000
TBC1D10C   1840000 perm   1763 sec   (1044 perm/sec)   p_kst 7.331522e-04   p_cons 9.522685e-01   p_joint 2.487500e-03

Joint ci ratio: 5.772533e-02	ci left: 2.414698e-03	ci right 2.558758e-03	k: 4599	n:1850000
Cons ci ratio: 6.452867e-04	ci left: 9.519545e-01	ci right 9.525695e-01	k: 1761686	n:1850000
KS ci ratio: 1.062568e-01	ci left: 6.960664e-04	ci right 7.746992e-04	k: 1359	n:1850000
TBC1D10C   1850000 perm   1781 sec   (1039 perm/sec)   p_kst 7.345946e-04   p_cons 9.522627e-01   p_joint 2.485946e-03

Joint ci ratio: 5.755663e-02	ci left: 2.416023e-03	ci right 2.559727e-03	k: 4626	n:1860000
Cons ci ratio: 6.434037e-04	ci left: 9.519760e-01	ci right 9.525892e-01	k: 1771247	n:1860000
KS ci ratio: 1.061010e-01	ci left: 6.944175e-04	ci right 7.727418e-04	k: 1363	n:1860000
TBC1D10C   1860000 perm   1798 sec   (1034 perm/sec)   p_kst 7.327957e-04   p_cons 9.522833e-01   p_joint 2.487097e-03

Joint ci ratio: 5.739558e-02	ci left: 2.416807e-03	ci right 2.560142e-03	k: 4652	n:1870000
Cons ci ratio: 6.417068e-04	ci left: 9.519732e-01	ci right 9.525848e-01	k: 1780763	n:1870000
KS ci ratio: 1.057526e-01	ci left: 6.953894e-04	ci right 7.735498e-04	k: 1372	n:1870000
TBC1D10C   1870000 perm   1816 sec   (1029 perm/sec)   p_kst 7.336898e-04   p_cons 9.522797e-01   p_joint 2.487701e-03

Joint ci ratio: 5.727270e-02	ci left: 2.414437e-03	ci right 2.557315e-03	k: 4672	n:1880000
Cons ci ratio: 6.399372e-04	ci left: 9.519826e-01	ci right 9.525926e-01	k: 1790302	n:1880000
KS ci ratio: 1.056374e-01	ci left: 6.932441e-04	ci right 7.710731e-04	k: 1375	n:1880000
TBC1D10C   1880000 perm   1834 sec   (1025 perm/sec)   p_kst 7.313830e-04   p_cons 9.522883e-01   p_joint 2.485106e-03

Joint ci ratio: 5.711401e-02	ci left: 2.415222e-03	ci right 2.557738e-03	k: 4698	n:1890000
Cons ci ratio: 6.381672e-04	ci left: 9.519941e-01	ci right 9.526024e-01	k: 1799845	n:1890000
KS ci ratio: 1.054843e-01	ci left: 6.916366e-04	ci right 7.691657e-04	k: 1379	n:1890000
TBC1D10C   1890000 perm   1852 sec   (1021 perm/sec)   p_kst 7.296296e-04   p_cons 9.522989e-01   p_joint 2.485714e-03

Joint ci ratio: 5.699898e-02	ci left: 2.412368e-03	ci right 2.554419e-03	k: 4717	n:1900000
Cons ci ratio: 6.364634e-04	ci left: 9.519981e-01	ci right 9.526047e-01	k: 1809374	n:1900000
KS ci ratio: 1.052178e-01	ci left: 6.915835e-04	ci right 7.688987e-04	k: 1386	n:1900000
TBC1D10C   1900000 perm   1869 sec   (1016 perm/sec)   p_kst 7.294737e-04   p_cons 9.523021e-01   p_joint 2.482632e-03

Joint ci ratio: 5.684256e-02	ci left: 2.413156e-03	ci right 2.554851e-03	k: 4743	n:1910000
Cons ci ratio: 6.347659e-04	ci left: 9.520031e-01	ci right 9.526081e-01	k: 1818905	n:1910000
KS ci ratio: 1.049533e-01	ci left: 6.915313e-04	ci right 7.686343e-04	k: 1393	n:1910000
TBC1D10C   1910000 perm   1887 sec   (1012 perm/sec)   p_kst 7.293194e-04   p_cons 9.523063e-01   p_joint 2.483246e-03

Joint ci ratio: 6.068920e-02	ci left: 2.102415e-03	ci right 2.234511e-03	k: 4162	n:1920000
Cons ci ratio: 6.330201e-04	ci left: 9.520169e-01	ci right 9.526203e-01	k: 1828453	n:1920000
KS ci ratio: 1.045788e-01	ci left: 6.930015e-04	ci right 7.699757e-04	k: 1403	n:1920000
TBC1D10C   1920000 perm   1905 sec   (1008 perm/sec)   p_kst 7.307292e-04   p_cons 9.523193e-01   p_joint 2.167708e-03

Joint ci ratio: 6.050050e-02	ci left: 2.104789e-03	ci right 2.236608e-03	k: 4188	n:1930000
Cons ci ratio: 6.314616e-04	ci left: 9.520056e-01	ci right 9.526075e-01	k: 1837953	n:1930000
KS ci ratio: 1.043561e-01	ci left: 6.924383e-04	ci right 7.691762e-04	k: 1409	n:1930000
TBC1D10C   1930000 perm   1923 sec   (1004 perm/sec)   p_kst 7.300518e-04   p_cons 9.523073e-01   p_joint 2.169948e-03

Joint ci ratio: 6.034225e-02	ci left: 2.105108e-03	ci right 2.236591e-03	k: 4210	n:1940000
Cons ci ratio: 6.299287e-04	ci left: 9.519924e-01	ci right 9.525928e-01	k: 1847449	n:1940000
KS ci ratio: 1.042084e-01	ci left: 6.908771e-04	ci right 7.673270e-04	k: 1413	n:1940000
TBC1D10C   1940000 perm   1940 sec   (1000 perm/sec)   p_kst 7.283505e-04   p_cons 9.522933e-01   p_joint 2.170103e-03

Joint ci ratio: 6.014964e-02	ci left: 2.107951e-03	ci right 2.239176e-03	k: 4237	n:1950000
Cons ci ratio: 6.282155e-04	ci left: 9.520071e-01	ci right 9.526059e-01	k: 1856999	n:1950000
KS ci ratio: 1.038783e-01	ci left: 6.918295e-04	ci right 7.681274e-04	k: 1422	n:1950000
TBC1D10C   1950000 perm   1958 sec   (996 perm/sec)   p_kst 7.292308e-04   p_cons 9.523072e-01   p_joint 2.172821e-03

Joint ci ratio: 6.007898e-02	ci left: 2.102221e-03	ci right 2.232930e-03	k: 4247	n:1960000
Cons ci ratio: 6.022610e-04	ci left: 9.554924e-01	ci right 9.560685e-01	k: 1873331	n:1960000
KS ci ratio: 1.037327e-01	ci left: 6.902875e-04	ci right 7.663022e-04	k: 1426	n:1960000
TBC1D10C   1960000 perm   1977 sec   (992 perm/sec)   p_kst 7.275510e-04   p_cons 9.557811e-01   p_joint 2.166837e-03

Joint ci ratio: 5.993104e-02	ci left: 2.102050e-03	ci right 2.232416e-03	k: 4268	n:1970000
Cons ci ratio: 6.005999e-04	ci left: 9.555115e-01	ci right 9.560861e-01	k: 1882925	n:1970000
KS ci ratio: 1.035154e-01	ci left: 6.897503e-04	ci right 7.655370e-04	k: 1432	n:1970000
TBC1D10C   1970000 perm   1995 sec   (987 perm/sec)   p_kst 7.269036e-04   p_cons 9.557995e-01   p_joint 2.166497e-03

Joint ci ratio: 5.571449e-02	ci left: 2.424444e-03	ci right 2.563886e-03	k: 4937	n:1980000
Cons ci ratio: 5.990669e-04	ci left: 9.555143e-01	ci right 9.560874e-01	k: 1892487	n:1980000
KS ci ratio: 1.032635e-01	ci left: 6.897106e-04	ci right 7.652974e-04	k: 1439	n:1980000
TBC1D10C   1980000 perm   2014 sec   (983 perm/sec)   p_kst 7.267677e-04   p_cons 9.558015e-01   p_joint 2.493434e-03

Joint ci ratio: 5.555155e-02	ci left: 2.426631e-03	ci right 2.565777e-03	k: 4966	n:1990000
Cons ci ratio: 5.975563e-04	ci left: 9.555155e-01	ci right 9.560872e-01	k: 1902046	n:1990000
KS ci ratio: 1.027650e-01	ci left: 6.930987e-04	ci right 7.686679e-04	k: 1453	n:1990000
TBC1D10C   1990000 perm   2032 sec   (979 perm/sec)   p_kst 7.301508e-04   p_cons 9.558020e-01   p_joint 2.495477e-03

Joint ci ratio: 5.941128e-02	ci left: 2.107460e-03	ci right 2.236989e-03	k: 4343	n:2000000
Cons ci ratio: 5.960465e-04	ci left: 9.555182e-01	ci right 9.560884e-01	k: 1911608	n:2000000
KS ci ratio: 1.025888e-01	ci left: 6.920690e-04	ci right 7.673888e-04	k: 1458	n:2000000
TBC1D10C   2000000 perm   2050 sec   (975 perm/sec)   p_kst 7.290000e-04   p_cons 9.558040e-01   p_joint 2.171500e-03

Joint ci ratio: 5.527404e-02	ci left: 2.427017e-03	ci right 2.565468e-03	k: 5016	n:2010000
Cons ci ratio: 5.945376e-04	ci left: 9.555224e-01	ci right 9.560912e-01	k: 1921173	n:2010000
KS ci ratio: 1.021694e-01	ci left: 6.944432e-04	ci right 7.696939e-04	k: 1470	n:2010000
TBC1D10C   2010000 perm   2069 sec   (972 perm/sec)   p_kst 7.313433e-04   p_cons 9.558075e-01   p_joint 2.495522e-03

Joint ci ratio: 5.514780e-02	ci left: 2.426231e-03	ci right 2.564311e-03	k: 5039	n:2020000
Cons ci ratio: 5.930956e-04	ci left: 9.555186e-01	ci right 9.560860e-01	k: 1930722	n:2020000
KS ci ratio: 1.019271e-01	ci left: 6.943823e-04	ci right 7.694373e-04	k: 1477	n:2020000
TBC1D10C   2020000 perm   2087 sec   (968 perm/sec)   p_kst 7.311881e-04   p_cons 9.558030e-01   p_joint 2.494554e-03

Joint ci ratio: 5.496260e-02	ci left: 2.430797e-03	ci right 2.568658e-03	k: 5073	n:2030000
Cons ci ratio: 5.916503e-04	ci left: 9.555169e-01	ci right 9.560828e-01	k: 1940275	n:2030000
KS ci ratio: 1.014476e-01	ci left: 6.976829e-04	ci right 7.727187e-04	k: 1491	n:2030000
TBC1D10C   2030000 perm   2106 sec   (964 perm/sec)   p_kst 7.344828e-04   p_cons 9.558005e-01   p_joint 2.499015e-03

Joint ci ratio: 5.482770e-02	ci left: 2.430968e-03	ci right 2.568489e-03	k: 5098	n:2040000
Cons ci ratio: 5.901094e-04	ci left: 9.555303e-01	ci right 9.560948e-01	k: 1949859	n:2040000
KS ci ratio: 1.010756e-01	ci left: 6.995185e-04	ci right 7.744595e-04	k: 1502	n:2040000
TBC1D10C   2040000 perm   2125 sec   (960 perm/sec)   p_kst 7.362745e-04   p_cons 9.558132e-01   p_joint 2.499020e-03

Joint ci ratio: 5.470984e-02	ci left: 2.429695e-03	ci right 2.566839e-03	k: 5120	n:2050000
Cons ci ratio: 5.885804e-04	ci left: 9.555437e-01	ci right 9.561067e-01	k: 1959443	n:2050000
KS ci ratio: 1.009080e-01	ci left: 6.984836e-04	ci right 7.731823e-04	k: 1507	n:2050000
TBC1D10C   2050000 perm   2144 sec   (956 perm/sec)   p_kst 7.351220e-04   p_cons 9.558259e-01   p_joint 2.497561e-03

Joint ci ratio: 5.453961e-02	ci left: 2.433222e-03	ci right 2.570124e-03	k: 5152	n:2060000
Cons ci ratio: 5.871071e-04	ci left: 9.555506e-01	ci right 9.561122e-01	k: 1969014	n:2060000
KS ci ratio: 1.006414e-01	ci left: 6.988786e-04	ci right 7.734103e-04	k: 1515	n:2060000
TBC1D10C   2060000 perm   2163 sec   (952 perm/sec)   p_kst 7.354369e-04   p_cons 9.558320e-01   p_joint 2.500971e-03

Joint ci ratio: 5.441306e-02	ci left: 2.432904e-03	ci right 2.569460e-03	k: 5176	n:2070000
Cons ci ratio: 5.857318e-04	ci left: 9.555448e-01	ci right 9.561051e-01	k: 1978559	n:2070000
KS ci ratio: 1.003768e-01	ci left: 6.992699e-04	ci right 7.736359e-04	k: 1523	n:2070000
TBC1D10C   2070000 perm   2182 sec   (949 perm/sec)   p_kst 7.357488e-04   p_cons 9.558256e-01   p_joint 2.500483e-03

Joint ci ratio: 5.431880e-02	ci left: 2.429743e-03	ci right 2.565879e-03	k: 5194	n:2080000
Cons ci ratio: 5.844194e-04	ci left: 9.555314e-01	ci right 9.560904e-01	k: 1988088	n:2080000
KS ci ratio: 1.002126e-01	ci left: 6.982516e-04	ci right 7.723806e-04	k: 1528	n:2080000
TBC1D10C   2080000 perm   2201 sec   (945 perm/sec)   p_kst 7.346154e-04   p_cons 9.558115e-01   p_joint 2.497115e-03

Joint ci ratio: 5.419898e-02	ci left: 2.428973e-03	ci right 2.564756e-03	k: 5217	n:2090000
Cons ci ratio: 5.830167e-04	ci left: 9.555325e-01	ci right 9.560902e-01	k: 1997647	n:2090000
KS ci ratio: 9.998405e-02	ci left: 6.981761e-04	ci right 7.721181e-04	k: 1535	n:2090000
TBC1D10C   2090000 perm   2220 sec   (942 perm/sec)   p_kst 7.344498e-04   p_cons 9.558120e-01   p_joint 2.496172e-03

Outputting figure to mutsig2_images.part000000000171/TBC1D10C.2_1377_2090000_0.00073445_0.95581_0.0024962.png
                gene_name: TBC1D10C
               theta_stop: 0.100 
                    nperm: 2090000 
                     p_ks: 0.00073 
        ci_ks_bounds_left: 0.00070 
       ci_ks_bounds_right: 0.00077 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.0025 
     ci_joint_bounds_left: 0.0024 
    ci_joint_bounds_right: 0.0026 

Current progress: 95 percent done.
TBC1D12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.603324e-01	ci left: 5.186203e-02	ci right 6.099852e-02	k: 563	n:10000
Cons ci ratio: 1.383594e-01	ci left: 6.913757e-02	ci right 7.951204e-02	k: 742	n:10000
KS ci ratio: 1.094953e-01	ci left: 1.073461e-01	ci right 1.198799e-01	k: 1135	n:10000
TBC1D12   10000 perm   2 sec   (5801 perm/sec)   p_kst 1.135000e-01   p_cons 7.420000e-02   p_joint 5.630000e-02

Joint ci ratio: 6.214010e-02	ci left: 1.607684e-01	ci right 1.711289e-01	k: 3318	n:20000
Cons ci ratio: 9.702811e-02	ci left: 7.177763e-02	ci right 7.914636e-02	k: 1508	n:20000
KS ci ratio: 7.791074e-02	ci left: 1.079558e-01	ci right 1.167573e-01	k: 2246	n:20000
TBC1D12   20000 perm   4 sec   (5097 perm/sec)   p_kst 1.123000e-01   p_cons 7.540000e-02   p_joint 1.659000e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D12.2_2380_20000_0.1123_0.0754_0.1659.png
                gene_name: TBC1D12
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.075 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 97 percent done.
TBC1D16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.182757e-02	ci left: 3.543616e-01	ci right 3.733178e-01	k: 3638	n:10000
Cons ci ratio: 9.859073e-02	ci left: 1.297297e-01	ci right 1.432828e-01	k: 1364	n:10000
KS ci ratio: 1.949659e-02	ci left: 7.937479e-01	ci right 8.094760e-01	k: 8017	n:10000
TBC1D16   10000 perm   2 sec   (5524 perm/sec)   p_kst 8.017000e-01   p_cons 1.364000e-01   p_joint 3.638000e-01

Outputting figure to mutsig2_images.part000000000171/TBC1D16.2_2348_10000_0.8017_0.1364_0.3638.png
                gene_name: TBC1D16
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 98 percent done.
TBC1D20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.657053e-01	ci left: 1.846678e-02	ci right 2.421679e-02	k: 212	n:10000
Cons ci ratio: 2.839522e-01	ci left: 1.604286e-02	ci right 2.144267e-02	k: 186	n:10000
KS ci ratio: 2.669889e-01	ci left: 1.827990e-02	ci right 2.400381e-02	k: 210	n:10000
TBC1D20   10000 perm   2 sec   (6165 perm/sec)   p_kst 2.100000e-02   p_cons 1.860000e-02   p_joint 2.120000e-02

Joint ci ratio: 2.640385e-01	ci left: 9.460703e-03	ci right 1.238410e-02	k: 217	n:20000
Cons ci ratio: 1.950228e-01	ci left: 1.786671e-02	ci right 2.177465e-02	k: 395	n:20000
KS ci ratio: 1.876616e-01	ci left: 1.934382e-02	ci right 2.339700e-02	k: 426	n:20000
TBC1D20   20000 perm   4 sec   (5499 perm/sec)   p_kst 2.130000e-02   p_cons 1.975000e-02   p_joint 1.085000e-02

Joint ci ratio: 2.222095e-01	ci left: 9.125451e-03	ci right 1.143753e-02	k: 307	n:30000
Cons ci ratio: 1.600634e-01	ci left: 1.802935e-02	ci right 2.119799e-02	k: 587	n:30000
KS ci ratio: 1.545255e-01	ci left: 1.937526e-02	ci right 2.265175e-02	k: 629	n:30000
TBC1D20   30000 perm   6 sec   (5238 perm/sec)   p_kst 2.096667e-02   p_cons 1.956667e-02   p_joint 1.023333e-02

Joint ci ratio: 1.904966e-01	ci left: 9.476622e-03	ci right 1.149539e-02	k: 418	n:40000
Cons ci ratio: 1.397141e-01	ci left: 1.795011e-02	ci right 2.067031e-02	k: 771	n:40000
KS ci ratio: 1.358189e-01	ci left: 1.901289e-02	ci right 2.180735e-02	k: 815	n:40000
TBC1D20   40000 perm   8 sec   (5024 perm/sec)   p_kst 2.037500e-02   p_cons 1.927500e-02   p_joint 1.045000e-02

Joint ci ratio: 1.554381e-01	ci left: 1.158300e-02	ci right 1.355419e-02	k: 627	n:50000
Cons ci ratio: 1.251629e-01	ci left: 1.803453e-02	ci right 2.046174e-02	k: 961	n:50000
KS ci ratio: 1.201641e-01	ci left: 1.958637e-02	ci right 2.210969e-02	k: 1041	n:50000
TBC1D20   50000 perm   10 sec   (4877 perm/sec)   p_kst 2.082000e-02   p_cons 1.922000e-02   p_joint 1.254000e-02

Joint ci ratio: 1.556030e-01	ci left: 9.651741e-03	ci right 1.129613e-02	k: 627	n:60000
Cons ci ratio: 1.147350e-01	ci left: 1.798736e-02	ci right 2.019284e-02	k: 1144	n:60000
KS ci ratio: 1.094445e-01	ci left: 1.978649e-02	ci right 2.209351e-02	k: 1255	n:60000
TBC1D20   60000 perm   13 sec   (4753 perm/sec)   p_kst 2.091667e-02   p_cons 1.906667e-02   p_joint 1.045000e-02

Joint ci ratio: 1.376238e-01	ci left: 1.066812e-02	ci right 1.225847e-02	k: 801	n:70000
Cons ci ratio: 1.053761e-01	ci left: 1.836323e-02	ci right 2.041974e-02	k: 1356	n:70000
KS ci ratio: 1.017643e-01	ci left: 1.969981e-02	ci right 2.182589e-02	k: 1452	n:70000
TBC1D20   70000 perm   15 sec   (4615 perm/sec)   p_kst 2.074286e-02   p_cons 1.937143e-02   p_joint 1.144286e-02

Joint ci ratio: 1.323289e-01	ci left: 1.013157e-02	ci right 1.157924e-02	k: 867	n:80000
Cons ci ratio: 9.872821e-02	ci left: 1.837006e-02	ci right 2.029002e-02	k: 1545	n:80000
KS ci ratio: 9.535536e-02	ci left: 1.970013e-02	ci right 2.168484e-02	k: 1654	n:80000
TBC1D20   80000 perm   18 sec   (4487 perm/sec)   p_kst 2.067500e-02   p_cons 1.931250e-02   p_joint 1.083750e-02

Joint ci ratio: 1.215605e-01	ci left: 1.072743e-02	ci right 1.212654e-02	k: 1027	n:90000
Cons ci ratio: 9.278993e-02	ci left: 1.854143e-02	ci right 2.035640e-02	k: 1749	n:90000
KS ci ratio: 9.049623e-02	ci left: 1.949723e-02	ci right 2.135608e-02	k: 1837	n:90000
TBC1D20   90000 perm   20 sec   (4399 perm/sec)   p_kst 2.041111e-02   p_cons 1.943333e-02   p_joint 1.141111e-02

Joint ci ratio: 1.111736e-01	ci left: 1.159685e-02	ci right 1.297165e-02	k: 1227	n:100000
Cons ci ratio: 8.764853e-02	ci left: 1.874979e-02	ci right 2.047823e-02	k: 1960	n:100000
KS ci ratio: 8.538868e-02	ci left: 1.975793e-02	ci right 2.153002e-02	k: 2063	n:100000
TBC1D20   100000 perm   23 sec   (4319 perm/sec)   p_kst 2.063000e-02   p_cons 1.960000e-02   p_joint 1.227000e-02

Joint ci ratio: 1.091434e-01	ci left: 1.095789e-02	ci right 1.223169e-02	k: 1274	n:110000
Cons ci ratio: 8.343362e-02	ci left: 1.885129e-02	ci right 2.050145e-02	k: 2163	n:110000
KS ci ratio: 8.158757e-02	ci left: 1.971526e-02	ci right 2.140106e-02	k: 2260	n:110000
TBC1D20   110000 perm   26 sec   (4241 perm/sec)   p_kst 2.054545e-02   p_cons 1.966364e-02   p_joint 1.158182e-02

Joint ci ratio: 1.038532e-01	ci left: 1.112361e-02	ci right 1.235016e-02	k: 1407	n:120000
Cons ci ratio: 7.967065e-02	ci left: 1.898655e-02	ci right 2.057011e-02	k: 2372	n:120000
KS ci ratio: 7.745226e-02	ci left: 2.008989e-02	ci right 2.171672e-02	k: 2507	n:120000
TBC1D20   120000 perm   29 sec   (4168 perm/sec)   p_kst 2.089167e-02   p_cons 1.976667e-02   p_joint 1.172500e-02

Joint ci ratio: 1.020837e-01	ci left: 1.064252e-02	ci right 1.179483e-02	k: 1457	n:130000
Cons ci ratio: 7.649579e-02	ci left: 1.904203e-02	ci right 2.056411e-02	k: 2573	n:130000
KS ci ratio: 7.430210e-02	ci left: 2.018211e-02	ci right 2.174706e-02	k: 2724	n:130000
TBC1D20   130000 perm   32 sec   (4094 perm/sec)   p_kst 2.095385e-02   p_cons 1.979231e-02   p_joint 1.120769e-02

Joint ci ratio: 1.014245e-01	ci left: 1.002140e-02	ci right 1.109902e-02	k: 1477	n:140000
Cons ci ratio: 7.376753e-02	ci left: 1.904157e-02	ci right 2.050699e-02	k: 2767	n:140000
KS ci ratio: 7.151989e-02	ci left: 2.025528e-02	ci right 2.176465e-02	k: 2940	n:140000
TBC1D20   140000 perm   35 sec   (4028 perm/sec)   p_kst 2.100000e-02   p_cons 1.976429e-02   p_joint 1.055000e-02

Joint ci ratio: 9.735269e-02	ci left: 1.017246e-02	ci right 1.121991e-02	k: 1603	n:150000
Cons ci ratio: 7.090987e-02	ci left: 1.925817e-02	ci right 2.068047e-02	k: 2994	n:150000
KS ci ratio: 6.923037e-02	ci left: 2.020168e-02	ci right 2.165692e-02	k: 3138	n:150000
TBC1D20   150000 perm   38 sec   (3962 perm/sec)   p_kst 2.092000e-02   p_cons 1.996000e-02   p_joint 1.068667e-02

Outputting figure to mutsig2_images.part000000000171/TBC1D20.2_1244_150000_0.02092_0.01996_0.010687.png
                gene_name: TBC1D20
               theta_stop: 0.097 
                    nperm: 150000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.010 
    ci_joint_bounds_right: 0.011 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000171
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 171 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1419>
Subject: Job 9894171: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1419>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000172> was used as the working directory.
Started at Sat Oct  6 00:32:19 2012
Results reported at Sat Oct  6 02:45:00 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000172.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000172.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 172  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000172.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   8564.76 sec.
    Max Memory :      3626 MB
    Max Swap   :      5947 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
172
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 172
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 172: processing genes 15417 - 15506
Calculating significance of each gene.
Using projection method.
15417	TBC1D21	7.367893e-01
15418	TBC1D22A	6.256893e-02
15419	TBC1D22B	8.607949e-01
15420	TBC1D23	2.193754e-01
15421	TBC1D24	5.493429e-01
15422	TBC1D25	2.202262e-01
15423	TBC1D26	7.362033e-01
15424	TBC1D28	5.987846e-02
15425	TBC1D29	1
15426	TBC1D2B	8.658671e-01
15427	TBC1D4	9.453272e-01
15428	TBC1D5	4.837073e-01
15429	TBC1D7	5.870486e-01
15430	TBC1D8	7.175402e-01
15431	TBC1D8B	4.893421e-01
15432	TBC1D9	7.813695e-01
15433	TBC1D9B	9.706793e-01
15434	TBCA	8.122286e-02
15435	TBCB	1
15436	TBCC	6.011843e-01
15437	TBCCD1	3.377768e-01
15438	TBCD	9.738458e-01
15439	TBCE	3.630736e-01
15440	TBCEL	4.544599e-01
15441	TBCK	9.748989e-01
15442	TBK1	3.020037e-01
15443	TBKBP1	1
In gene TBL1X the following bins exceed PROBCAP:
    READ-AG-3584	categ 6	N = 1768    n = 1	mu =   1.72e-07
15444	TBL1X	8.926980e-02
15445	TBL1XR1	5.360736e-02
15446	TBL1Y	8.655372e-01
15447	TBL2	6.806204e-01
15448	TBL3	1
15449	TBP	6.699991e-01
15450	TBPL1	5.203804e-01
15451	TBPL2	7.877053e-01
15452	TBR1	7.564152e-01
15453	TBRG1	1
15454	TBRG4	9.257709e-01
15455	TBX1	8.134733e-01
15456	TBX10	1
15457	TBX15	1.655702e-01
15458	TBX18	8.526370e-02
15459	TBX19	4.929352e-01
15460	TBX2	1
15461	TBX20	7.480519e-01
15462	TBX21	6.396551e-01
15463	TBX22	1.801848e-01
15464	TBX3	3.531117e-01
15465	TBX4	3.521924e-01
15466	TBX5	1.485303e-01
15467	TBX6	8.277498e-01
15468	TBXA2R	1
15469	TBXAS1	1.492564e-01
15470	TC2N	2.636252e-01
15471	TCAP	1
15472	TCEA1	1.173791e-01
15473	TCEA2	7.124822e-01
15474	TCEA3	7.805993e-01
15475	TCEAL1	1
15476	TCEAL2	4.254831e-01
15477	TCEAL3	1
15478	TCEAL4	2.868650e-01
15479	TCEAL5	4.531894e-01
15480	TCEAL6	4.355590e-01
15481	TCEAL7	1
15482	TCEAL8	1
15483	TCEANC	2.647672e-02
15484	TCEB1	1
15485	TCEB2	1
15486	TCEB3	3.855471e-01
15487	TCEB3B	7.464151e-02
15488	TCEB3C	1
15489	TCERG1	9.661362e-03
15490	TCERG1L	9.387250e-02
In gene TCF12 the following bins exceed PROBCAP:
    COAD-AA-A00K	categ 6	N = 2270    n = 1	mu =   5.86e-07
15491	TCF12	3.208366e-02
15492	TCF19	1
15493	TCF20	8.727411e-01
15494	TCF21	1
15495	TCF23	6.920880e-01
15496	TCF25	9.652555e-01
15497	TCF3	9.881402e-01
15498	TCF4	5.235468e-01
15499	TCF7	3.057303e-02
15500	TCF7L1	4.455559e-01
In gene TCF7L2 the following bins exceed PROBCAP:
    COAD-AA-A01I	categ 6	N = 2011    n = 1	mu =   3.29e-07
    READ-AF-2692	categ 6	N = 2047    n = 1	mu =   1.72e-07
15501	TCF7L2	1.115347e-10
15502	TCFL5	3.560991e-01
15503	TCHH	2.969712e-01
15504	TCHHL1	3.779961e-01
15505	TCHP	1.731398e-01
15506	TCIRG1	7.743305e-01
Done

Running MutSig 2:
Scatter job 172: processing genes 15417 - 15506
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TCF7L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.364913e-01	ci left: 6.259350e-03	ci right 9.836166e-03	k: 79	n:10000
Cons ci ratio: 1.390683e-01	ci left: 6.846013e-02	ci right 7.878990e-02	k: 735	n:10000
KS ci ratio: 1.130871e+00	ci left: 5.492399e-04	ci right 1.967349e-03	k: 11	n:10000
TCF7L2   10000 perm   3 sec   (3879 perm/sec)   p_kst 1.100000e-03   p_cons 7.350000e-02   p_joint 7.900000e-03

Joint ci ratio: 2.730449e-01	ci left: 8.807415e-03	ci right 1.163770e-02	k: 203	n:20000
Cons ci ratio: 9.830217e-02	ci left: 7.001832e-02	ci right 7.730621e-02	k: 1472	n:20000
KS ci ratio: 7.996665e-01	ci left: 7.291366e-04	ci right 1.725068e-03	k: 23	n:20000
TCF7L2   20000 perm   9 sec   (2294 perm/sec)   p_kst 1.150000e-03   p_cons 7.360000e-02   p_joint 1.015000e-02

Joint ci ratio: 3.994361e-01	ci left: 2.562755e-03	ci right 3.869722e-03	k: 95	n:30000
Cons ci ratio: 8.112933e-02	ci left: 6.926340e-02	ci right 7.515310e-02	k: 2165	n:30000
KS ci ratio: 6.354945e-01	ci left: 8.685245e-04	ci right 1.699591e-03	k: 37	n:30000
TCF7L2   30000 perm   12 sec   (2511 perm/sec)   p_kst 1.233333e-03   p_cons 7.216667e-02   p_joint 3.166667e-03

Joint ci ratio: 2.481443e-01	ci left: 5.430825e-03	ci right 6.992166e-03	k: 247	n:40000
Cons ci ratio: 7.075000e-02	ci left: 6.874776e-02	ci right 7.381469e-02	k: 2850	n:40000
KS ci ratio: 5.776328e-01	ci left: 8.206974e-04	ci right 1.505052e-03	k: 45	n:40000
TCF7L2   40000 perm   15 sec   (2626 perm/sec)   p_kst 1.125000e-03   p_cons 7.125000e-02   p_joint 6.175000e-03

Joint ci ratio: 2.613261e-01	ci left: 3.894862e-03	ci right 5.083797e-03	k: 223	n:50000
Cons ci ratio: 6.366398e-02	ci left: 6.823178e-02	ci right 7.273824e-02	k: 3523	n:50000
KS ci ratio: 4.975268e-01	ci left: 9.333279e-04	ci right 1.566869e-03	k: 61	n:50000
TCF7L2   50000 perm   19 sec   (2687 perm/sec)   p_kst 1.220000e-03   p_cons 7.046000e-02   p_joint 4.460000e-03

Joint ci ratio: 2.802582e-01	ci left: 2.794924e-03	ci right 3.720822e-03	k: 194	n:60000
Cons ci ratio: 5.795359e-02	ci left: 6.879303e-02	ci right 7.291526e-02	k: 4250	n:60000
KS ci ratio: 4.464350e-01	ci left: 9.981151e-04	ci right 1.585169e-03	k: 76	n:60000
TCF7L2   60000 perm   22 sec   (2734 perm/sec)   p_kst 1.266667e-03   p_cons 7.083333e-02   p_joint 3.233333e-03

Joint ci ratio: 3.105207e-01	ci left: 1.919226e-03	ci right 2.637316e-03	k: 158	n:70000
Cons ci ratio: 5.376265e-02	ci left: 6.868488e-02	ci right 7.249367e-02	k: 4940	n:70000
KS ci ratio: 4.200039e-01	ci left: 9.828124e-04	ci right 1.517057e-03	k: 86	n:70000
TCF7L2   70000 perm   25 sec   (2762 perm/sec)   p_kst 1.228571e-03   p_cons 7.057143e-02   p_joint 2.257143e-03

Joint ci ratio: 2.810964e-01	ci left: 2.084460e-03	ci right 2.777412e-03	k: 193	n:80000
Cons ci ratio: 5.535494e-02	ci left: 5.735232e-02	ci right 6.062975e-02	k: 4718	n:80000
KS ci ratio: 3.898058e-01	ci left: 1.017162e-03	ci right 1.520129e-03	k: 100	n:80000
TCF7L2   80000 perm   29 sec   (2771 perm/sec)   p_kst 1.250000e-03   p_cons 5.897500e-02   p_joint 2.412500e-03

Joint ci ratio: 2.664005e-01	ci left: 2.080530e-03	ci right 2.729985e-03	k: 215	n:90000
Cons ci ratio: 5.237750e-02	ci left: 5.705226e-02	ci right 6.013183e-02	k: 5272	n:90000
KS ci ratio: 3.653062e-01	ci left: 1.044954e-03	ci right 1.521460e-03	k: 114	n:90000
TCF7L2   90000 perm   32 sec   (2775 perm/sec)   p_kst 1.266667e-03   p_cons 5.857778e-02   p_joint 2.388889e-03

Joint ci ratio: 1.983640e-01	ci left: 3.504132e-03	ci right 4.285077e-03	k: 388	n:100000
Cons ci ratio: 4.944758e-02	ci left: 5.766602e-02	ci right 6.059961e-02	k: 5912	n:100000
KS ci ratio: 3.384078e-01	ci left: 1.113696e-03	ci right 1.576006e-03	k: 133	n:100000
TCF7L2   100000 perm   36 sec   (2771 perm/sec)   p_kst 1.330000e-03   p_cons 5.912000e-02   p_joint 3.880000e-03

Joint ci ratio: 1.922937e-01	ci left: 3.401716e-03	ci right 4.133922e-03	k: 413	n:110000
Cons ci ratio: 4.719775e-02	ci left: 5.761467e-02	ci right 6.040864e-02	k: 6490	n:110000
KS ci ratio: 3.198469e-01	ci left: 1.145899e-03	ci right 1.590151e-03	k: 149	n:110000
TCF7L2   110000 perm   40 sec   (2757 perm/sec)   p_kst 1.354545e-03   p_cons 5.900000e-02   p_joint 3.754545e-03

Joint ci ratio: 1.878247e-01	ci left: 3.276956e-03	ci right 3.964043e-03	k: 433	n:120000
Cons ci ratio: 4.511429e-02	ci left: 5.785474e-02	ci right 6.053327e-02	k: 7102	n:120000
KS ci ratio: 3.022215e-01	ci left: 1.188713e-03	ci right 1.619295e-03	k: 167	n:120000
TCF7L2   120000 perm   44 sec   (2744 perm/sec)   p_kst 1.391667e-03   p_cons 5.918333e-02   p_joint 3.608333e-03

Joint ci ratio: 1.893896e-01	ci left: 2.973534e-03	ci right 3.602791e-03	k: 426	n:130000
Cons ci ratio: 4.331128e-02	ci left: 5.799164e-02	ci right 6.056652e-02	k: 7705	n:130000
KS ci ratio: 2.887805e-01	ci left: 1.211234e-03	ci right 1.626901e-03	k: 183	n:130000
TCF7L2   130000 perm   48 sec   (2729 perm/sec)   p_kst 1.407692e-03   p_cons 5.926923e-02   p_joint 3.276923e-03

Joint ci ratio: 1.945037e-01	ci left: 2.611498e-03	ci right 3.180829e-03	k: 404	n:140000
Cons ci ratio: 4.174321e-02	ci left: 5.801886e-02	ci right 6.049943e-02	k: 8295	n:140000
KS ci ratio: 2.756102e-01	ci left: 1.244198e-03	ci right 1.648332e-03	k: 201	n:140000
TCF7L2   140000 perm   52 sec   (2712 perm/sec)   p_kst 1.435714e-03   p_cons 5.925000e-02   p_joint 2.885714e-03

Joint ci ratio: 1.892092e-01	ci left: 2.583363e-03	ci right 3.129468e-03	k: 427	n:150000
Cons ci ratio: 4.027620e-02	ci left: 5.820240e-02	ci right 6.060133e-02	k: 8909	n:150000
KS ci ratio: 2.623065e-01	ci left: 1.291821e-03	ci right 1.687850e-03	k: 222	n:150000
TCF7L2   150000 perm   56 sec   (2694 perm/sec)   p_kst 1.480000e-03   p_cons 5.939333e-02   p_joint 2.846667e-03

Joint ci ratio: 1.831072e-01	ci left: 2.594709e-03	ci right 3.123561e-03	k: 456	n:160000
Cons ci ratio: 3.892547e-02	ci left: 5.844484e-02	ci right 6.077115e-02	k: 9536	n:160000
KS ci ratio: 2.549812e-01	ci left: 1.287065e-03	ci right 1.668865e-03	k: 235	n:160000
TCF7L2   160000 perm   60 sec   (2674 perm/sec)   p_kst 1.468750e-03   p_cons 5.960000e-02   p_joint 2.850000e-03

Joint ci ratio: 1.901339e-01	ci left: 2.256989e-03	ci right 2.736699e-03	k: 423	n:170000
Cons ci ratio: 3.775942e-02	ci left: 5.849085e-02	ci right 6.074773e-02	k: 10134	n:170000
KS ci ratio: 2.477395e-01	ci left: 1.288522e-03	ci right 1.658226e-03	k: 249	n:170000
TCF7L2   170000 perm   64 sec   (2652 perm/sec)   p_kst 1.464706e-03   p_cons 5.961176e-02   p_joint 2.488235e-03

Joint ci ratio: 1.945666e-01	ci left: 2.031104e-03	ci right 2.474060e-03	k: 404	n:180000
Cons ci ratio: 3.671044e-02	ci left: 5.847759e-02	ci right 6.066995e-02	k: 10722	n:180000
KS ci ratio: 2.406257e-01	ci left: 1.295173e-03	ci right 1.654524e-03	k: 264	n:180000
TCF7L2   180000 perm   68 sec   (2631 perm/sec)   p_kst 1.466667e-03   p_cons 5.956667e-02   p_joint 2.244444e-03

Joint ci ratio: 1.945781e-01	ci left: 1.924194e-03	ci right 2.343860e-03	k: 404	n:190000
Cons ci ratio: 3.571073e-02	ci left: 5.857090e-02	ci right 6.070572e-02	k: 11330	n:190000
KS ci ratio: 2.349333e-01	ci left: 1.291351e-03	ci right 1.639933e-03	k: 277	n:190000
TCF7L2   190000 perm   73 sec   (2609 perm/sec)   p_kst 1.457895e-03   p_cons 5.963158e-02   p_joint 2.126316e-03

Joint ci ratio: 1.922250e-01	ci left: 1.875558e-03	ci right 2.279092e-03	k: 414	n:200000
Cons ci ratio: 3.478848e-02	ci left: 5.865560e-02	ci right 6.073719e-02	k: 11938	n:200000
KS ci ratio: 2.257744e-01	ci left: 1.335153e-03	ci right 1.679555e-03	k: 300	n:200000
TCF7L2   200000 perm   77 sec   (2589 perm/sec)   p_kst 1.500000e-03   p_cons 5.969000e-02   p_joint 2.070000e-03

Joint ci ratio: 1.953241e-01	ci left: 1.727331e-03	ci right 2.105677e-03	k: 401	n:210000
Cons ci ratio: 3.393994e-02	ci left: 5.871397e-02	ci right 6.074582e-02	k: 12542	n:210000
KS ci ratio: 2.210524e-01	ci left: 1.330015e-03	ci right 1.664940e-03	k: 313	n:210000
TCF7L2   210000 perm   82 sec   (2566 perm/sec)   p_kst 1.490476e-03   p_cons 5.972381e-02   p_joint 1.909524e-03

Joint ci ratio: 1.983204e-01	ci left: 1.596948e-03	ci right 1.952749e-03	k: 389	n:220000
Cons ci ratio: 3.315329e-02	ci left: 5.875858e-02	ci right 6.074394e-02	k: 13144	n:220000
KS ci ratio: 2.143295e-01	ci left: 1.355515e-03	ci right 1.685115e-03	k: 333	n:220000
TCF7L2   220000 perm   86 sec   (2544 perm/sec)   p_kst 1.513636e-03   p_cons 5.974545e-02   p_joint 1.768182e-03

Joint ci ratio: 1.671014e-01	ci left: 2.187482e-03	ci right 2.590439e-03	k: 548	n:230000
Cons ci ratio: 3.240137e-02	ci left: 5.886022e-02	ci right 6.080307e-02	k: 13760	n:230000
KS ci ratio: 2.099746e-01	ci left: 1.354215e-03	ci right 1.675948e-03	k: 347	n:230000
TCF7L2   230000 perm   91 sec   (2521 perm/sec)   p_kst 1.508696e-03   p_cons 5.982609e-02   p_joint 2.382609e-03

Joint ci ratio: 1.642845e-01	ci left: 2.172219e-03	ci right 2.564953e-03	k: 567	n:240000
Cons ci ratio: 3.165742e-02	ci left: 5.909860e-02	ci right 6.100371e-02	k: 14411	n:240000
KS ci ratio: 2.047450e-01	ci left: 1.368897e-03	ci right 1.685004e-03	k: 365	n:240000
TCF7L2   240000 perm   96 sec   (2497 perm/sec)   p_kst 1.520833e-03   p_cons 6.004583e-02   p_joint 2.362500e-03

Joint ci ratio: 1.621601e-01	ci left: 2.142877e-03	ci right 2.524807e-03	k: 582	n:250000
Cons ci ratio: 3.099201e-02	ci left: 5.921116e-02	ci right 6.107906e-02	k: 15035	n:250000
KS ci ratio: 2.012038e-01	ci left: 1.363498e-03	ci right 1.672244e-03	k: 378	n:250000
TCF7L2   250000 perm   101 sec   (2473 perm/sec)   p_kst 1.512000e-03   p_cons 6.014000e-02   p_joint 2.328000e-03

Joint ci ratio: 1.648823e-01	ci left: 1.990359e-03	ci right 2.351651e-03	k: 563	n:260000
Cons ci ratio: 3.039683e-02	ci left: 5.920469e-02	ci right 6.103590e-02	k: 15630	n:260000
KS ci ratio: 1.978402e-01	ci left: 1.358557e-03	ci right 1.660422e-03	k: 391	n:260000
TCF7L2   260000 perm   106 sec   (2451 perm/sec)   p_kst 1.503846e-03   p_cons 6.011538e-02   p_joint 2.165385e-03

Joint ci ratio: 1.539261e-01	ci left: 2.211820e-03	ci right 2.584175e-03	k: 646	n:270000
Cons ci ratio: 2.984740e-02	ci left: 5.915122e-02	ci right 6.094713e-02	k: 16212	n:270000
KS ci ratio: 1.936843e-01	ci left: 1.368118e-03	ci right 1.664969e-03	k: 408	n:270000
TCF7L2   270000 perm   111 sec   (2429 perm/sec)   p_kst 1.511111e-03   p_cons 6.004444e-02   p_joint 2.392593e-03

Joint ci ratio: 1.505869e-01	ci left: 2.232454e-03	ci right 2.599395e-03	k: 675	n:280000
Cons ci ratio: 2.931836e-02	ci left: 5.913376e-02	ci right 6.089678e-02	k: 16803	n:280000
KS ci ratio: 1.895571e-01	ci left: 1.380460e-03	ci right 1.672871e-03	k: 426	n:280000
TCF7L2   280000 perm   116 sec   (2408 perm/sec)   p_kst 1.521429e-03   p_cons 6.001071e-02   p_joint 2.410714e-03

Joint ci ratio: 1.500380e-01	ci left: 2.172060e-03	ci right 2.527657e-03	k: 680	n:290000
Cons ci ratio: 2.880416e-02	ci left: 5.916573e-02	ci right 6.089825e-02	k: 17408	n:290000
KS ci ratio: 1.861022e-01	ci left: 1.385436e-03	ci right 1.672949e-03	k: 442	n:290000
TCF7L2   290000 perm   122 sec   (2387 perm/sec)   p_kst 1.524138e-03   p_cons 6.002759e-02   p_joint 2.344828e-03

Joint ci ratio: 1.579073e-01	ci left: 1.888107e-03	ci right 2.214965e-03	k: 614	n:300000
Cons ci ratio: 2.833284e-02	ci left: 5.912959e-02	ci right 6.083226e-02	k: 17993	n:300000
KS ci ratio: 1.832298e-01	ci left: 1.383764e-03	ci right 1.666006e-03	k: 456	n:300000
TCF7L2   300000 perm   127 sec   (2365 perm/sec)   p_kst 1.520000e-03   p_cons 5.997667e-02   p_joint 2.046667e-03

Joint ci ratio: 1.556466e-01	ci left: 1.882986e-03	ci right 2.203856e-03	k: 632	n:310000
Cons ci ratio: 2.785682e-02	ci left: 5.920496e-02	ci right 6.088070e-02	k: 18612	n:310000
KS ci ratio: 1.806787e-01	ci left: 1.379152e-03	ci right 1.656107e-03	k: 469	n:310000
TCF7L2   310000 perm   132 sec   (2344 perm/sec)   p_kst 1.512903e-03   p_cons 6.003871e-02   p_joint 2.038710e-03

Joint ci ratio: 1.526601e-01	ci left: 1.899256e-03	ci right 2.216120e-03	k: 657	n:320000
Cons ci ratio: 2.739264e-02	ci left: 5.932242e-02	ci right 6.097306e-02	k: 19246	n:320000
KS ci ratio: 1.769516e-01	ci left: 1.395757e-03	ci right 1.669647e-03	k: 489	n:320000
TCF7L2   320000 perm   138 sec   (2323 perm/sec)   p_kst 1.528125e-03   p_cons 6.014375e-02   p_joint 2.053125e-03

Joint ci ratio: 1.528979e-01	ci left: 1.835869e-03	ci right 2.142679e-03	k: 655	n:330000
Cons ci ratio: 2.697186e-02	ci left: 5.934565e-02	ci right 6.097118e-02	k: 19851	n:330000
KS ci ratio: 1.736166e-01	ci left: 1.408512e-03	ci right 1.679150e-03	k: 508	n:330000
TCF7L2   330000 perm   143 sec   (2300 perm/sec)   p_kst 1.539394e-03   p_cons 6.015455e-02   p_joint 1.984848e-03

Joint ci ratio: 1.500640e-01	ci left: 1.852616e-03	ci right 2.155972e-03	k: 680	n:340000
Cons ci ratio: 2.655539e-02	ci left: 5.942907e-02	ci right 6.103137e-02	k: 20477	n:340000
KS ci ratio: 1.706252e-01	ci left: 1.417747e-03	ci right 1.684982e-03	k: 526	n:340000
TCF7L2   340000 perm   149 sec   (2280 perm/sec)   p_kst 1.547059e-03   p_cons 6.022647e-02   p_joint 2.000000e-03

Joint ci ratio: 1.483325e-01	ci left: 1.843692e-03	ci right 2.141793e-03	k: 696	n:350000
Cons ci ratio: 2.615697e-02	ci left: 5.951076e-02	ci right 6.109082e-02	k: 21104	n:350000
KS ci ratio: 1.690304e-01	ci left: 1.404596e-03	ci right 1.666625e-03	k: 536	n:350000
TCF7L2   350000 perm   155 sec   (2259 perm/sec)   p_kst 1.531429e-03   p_cons 6.029714e-02   p_joint 1.988571e-03

Joint ci ratio: 1.458420e-01	ci left: 1.856692e-03	ci right 2.151416e-03	k: 720	n:360000
Cons ci ratio: 2.579745e-02	ci left: 5.949419e-02	ci right 6.105178e-02	k: 21697	n:360000
KS ci ratio: 1.658179e-01	ci left: 1.421469e-03	ci right 1.681104e-03	k: 557	n:360000
TCF7L2   360000 perm   161 sec   (2238 perm/sec)   p_kst 1.547222e-03   p_cons 6.026944e-02   p_joint 2.000000e-03

Joint ci ratio: 1.439577e-01	ci left: 1.856001e-03	ci right 2.146482e-03	k: 739	n:370000
Cons ci ratio: 2.545843e-02	ci left: 5.945180e-02	ci right 6.098753e-02	k: 22280	n:370000
KS ci ratio: 1.629229e-01	ci left: 1.434883e-03	ci right 1.691943e-03	k: 577	n:370000
TCF7L2   370000 perm   167 sec   (2218 perm/sec)   p_kst 1.559459e-03   p_cons 6.021622e-02   p_joint 1.997297e-03

Joint ci ratio: 1.418640e-01	ci left: 1.862984e-03	ci right 2.149958e-03	k: 761	n:380000
Cons ci ratio: 2.513185e-02	ci left: 5.941438e-02	ci right 6.092917e-02	k: 22864	n:380000
KS ci ratio: 1.603086e-01	ci left: 1.445101e-03	ci right 1.699438e-03	k: 596	n:380000
TCF7L2   380000 perm   173 sec   (2197 perm/sec)   p_kst 1.568421e-03   p_cons 6.016842e-02   p_joint 2.002632e-03

Joint ci ratio: 1.414960e-01	ci left: 1.825105e-03	ci right 2.105454e-03	k: 765	n:390000
Cons ci ratio: 2.481133e-02	ci left: 5.940705e-02	ci right 6.090206e-02	k: 23459	n:390000
KS ci ratio: 1.584617e-01	ci left: 1.442513e-03	ci right 1.693191e-03	k: 610	n:390000
TCF7L2   390000 perm   179 sec   (2178 perm/sec)   p_kst 1.564103e-03   p_cons 6.015128e-02   p_joint 1.961538e-03

Joint ci ratio: 1.393294e-01	ci left: 1.837371e-03	ci right 2.114923e-03	k: 789	n:400000
Cons ci ratio: 2.450276e-02	ci left: 5.940020e-02	ci right 6.087618e-02	k: 24054	n:400000
KS ci ratio: 1.564268e-01	ci left: 1.444874e-03	ci right 1.692436e-03	k: 626	n:400000
TCF7L2   400000 perm   185 sec   (2159 perm/sec)   p_kst 1.565000e-03   p_cons 6.013500e-02   p_joint 1.972500e-03

Joint ci ratio: 1.381981e-01	ci left: 1.823162e-03	ci right 2.096148e-03	k: 802	n:410000
Cons ci ratio: 2.421118e-02	ci left: 5.936711e-02	ci right 6.082448e-02	k: 24638	n:410000
KS ci ratio: 1.544683e-01	ci left: 1.447140e-03	ci right 1.691698e-03	k: 642	n:410000
TCF7L2   410000 perm   192 sec   (2140 perm/sec)   p_kst 1.565854e-03   p_cons 6.009268e-02   p_joint 1.956098e-03

Joint ci ratio: 1.403181e-01	ci left: 1.724596e-03	ci right 1.987115e-03	k: 778	n:420000
Cons ci ratio: 2.392876e-02	ci left: 5.934044e-02	ci right 6.077992e-02	k: 25224	n:420000
KS ci ratio: 1.518905e-01	ci left: 1.463058e-03	ci right 1.705806e-03	k: 664	n:420000
TCF7L2   420000 perm   198 sec   (2121 perm/sec)   p_kst 1.580952e-03   p_cons 6.005714e-02   p_joint 1.852381e-03

Joint ci ratio: 1.384638e-01	ci left: 1.731623e-03	ci right 1.991442e-03	k: 799	n:430000
Cons ci ratio: 2.364041e-02	ci left: 5.938911e-02	ci right 6.081218e-02	k: 25842	n:430000
KS ci ratio: 1.499853e-01	ci left: 1.467076e-03	ci right 1.707162e-03	k: 681	n:430000
TCF7L2   430000 perm   204 sec   (2103 perm/sec)   p_kst 1.583721e-03   p_cons 6.009767e-02   p_joint 1.858140e-03

Joint ci ratio: 1.291032e-01	ci left: 1.955892e-03	ci right 2.228004e-03	k: 919	n:440000
Cons ci ratio: 2.336599e-02	ci left: 5.941758e-02	ci right 6.082458e-02	k: 26452	n:440000
KS ci ratio: 1.478326e-01	ci left: 1.477495e-03	ci right 1.715509e-03	k: 701	n:440000
TCF7L2   440000 perm   211 sec   (2082 perm/sec)   p_kst 1.593182e-03   p_cons 6.011818e-02   p_joint 2.088636e-03

Joint ci ratio: 1.274511e-01	ci left: 1.964050e-03	ci right 2.233536e-03	k: 943	n:450000
Cons ci ratio: 2.311092e-02	ci left: 5.939626e-02	ci right 6.078719e-02	k: 27040	n:450000
KS ci ratio: 1.459727e-01	ci left: 1.483192e-03	ci right 1.718856e-03	k: 719	n:450000
TCF7L2   450000 perm   218 sec   (2063 perm/sec)   p_kst 1.597778e-03   p_cons 6.008889e-02   p_joint 2.095556e-03

Joint ci ratio: 1.426408e-01	ci left: 1.522195e-03	ci right 1.758066e-03	k: 753	n:460000
Cons ci ratio: 2.285917e-02	ci left: 5.939972e-02	ci right 6.077539e-02	k: 27639	n:460000
KS ci ratio: 1.402393e-01	ci left: 1.576720e-03	ci right 1.816583e-03	k: 779	n:460000
TCF7L2   460000 perm   225 sec   (2046 perm/sec)   p_kst 1.693478e-03   p_cons 6.008478e-02   p_joint 1.636957e-03

Joint ci ratio: 1.415197e-01	ci left: 1.514432e-03	ci right 1.747100e-03	k: 765	n:470000
Cons ci ratio: 2.262144e-02	ci left: 5.937349e-02	ci right 6.073407e-02	k: 28224	n:470000
KS ci ratio: 1.386485e-01	ci left: 1.580135e-03	ci right 1.817565e-03	k: 797	n:470000
TCF7L2   470000 perm   232 sec   (2029 perm/sec)   p_kst 1.695745e-03   p_cons 6.005106e-02   p_joint 1.627660e-03

Joint ci ratio: 1.332409e-01	ci left: 1.680046e-03	ci right 1.921864e-03	k: 863	n:480000
Cons ci ratio: 2.236704e-02	ci left: 5.946863e-02	ci right 6.081586e-02	k: 28867	n:480000
KS ci ratio: 1.372792e-01	ci left: 1.579398e-03	ci right 1.814183e-03	k: 813	n:480000
TCF7L2   480000 perm   239 sec   (2012 perm/sec)   p_kst 1.693750e-03   p_cons 6.013958e-02   p_joint 1.797917e-03

Joint ci ratio: 1.320995e-01	ci left: 1.675355e-03	ci right 1.914271e-03	k: 878	n:490000
Cons ci ratio: 2.213979e-02	ci left: 5.946454e-02	ci right 6.079781e-02	k: 29463	n:490000
KS ci ratio: 1.359498e-01	ci left: 1.578702e-03	ci right 1.810927e-03	k: 829	n:490000
TCF7L2   490000 perm   246 sec   (1995 perm/sec)   p_kst 1.691837e-03   p_cons 6.012857e-02   p_joint 1.791837e-03

Joint ci ratio: 1.307674e-01	ci left: 1.676665e-03	ci right 1.913168e-03	k: 896	n:500000
Cons ci ratio: 2.191895e-02	ci left: 5.946267e-02	ci right 6.078244e-02	k: 30060	n:500000
KS ci ratio: 1.344990e-01	ci left: 1.581910e-03	ci right 1.811925e-03	k: 847	n:500000
TCF7L2   500000 perm   253 sec   (1979 perm/sec)   p_kst 1.694000e-03   p_cons 6.012000e-02   p_joint 1.792000e-03

Joint ci ratio: 1.290516e-01	ci left: 1.689319e-03	ci right 1.924242e-03	k: 920	n:510000
Cons ci ratio: 2.168314e-02	ci left: 5.957213e-02	ci right 6.087993e-02	k: 30714	n:510000
KS ci ratio: 1.329401e-01	ci left: 1.588797e-03	ci right 1.816924e-03	k: 867	n:510000
TCF7L2   510000 perm   260 sec   (1962 perm/sec)   p_kst 1.700000e-03   p_cons 6.022353e-02   p_joint 1.803922e-03

Joint ci ratio: 1.175862e-01	ci left: 2.007260e-03	ci right 2.259877e-03	k: 1108	n:520000
Cons ci ratio: 2.224673e-02	ci left: 5.571710e-02	ci right 5.697246e-02	k: 29298	n:520000
KS ci ratio: 1.315826e-01	ci left: 1.591713e-03	ci right 1.817743e-03	k: 885	n:520000
TCF7L2   520000 perm   267 sec   (1947 perm/sec)   p_kst 1.701923e-03   p_cons 5.634231e-02   p_joint 2.130769e-03

Joint ci ratio: 1.170085e-01	ci left: 1.989532e-03	ci right 2.238602e-03	k: 1119	n:530000
Cons ci ratio: 2.204463e-02	ci left: 5.568093e-02	ci right 5.692393e-02	k: 29839	n:530000
KS ci ratio: 1.306283e-01	ci left: 1.585404e-03	ci right 1.808779e-03	k: 898	n:530000
TCF7L2   530000 perm   274 sec   (1932 perm/sec)   p_kst 1.694340e-03   p_cons 5.630000e-02   p_joint 2.111321e-03

Joint ci ratio: 1.156730e-01	ci left: 1.999436e-03	ci right 2.246695e-03	k: 1145	n:540000
Cons ci ratio: 2.183462e-02	ci left: 5.571062e-02	ci right 5.694229e-02	k: 30415	n:540000
KS ci ratio: 1.294812e-01	ci left: 1.584711e-03	ci right 1.805876e-03	k: 914	n:540000
TCF7L2   540000 perm   282 sec   (1916 perm/sec)   p_kst 1.692593e-03   p_cons 5.632407e-02   p_joint 2.120370e-03

Joint ci ratio: 1.036722e-01	ci left: 2.458279e-03	ci right 2.728821e-03	k: 1425	n:550000
Cons ci ratio: 2.161388e-02	ci left: 5.582069e-02	ci right 5.704217e-02	k: 31036	n:550000
KS ci ratio: 1.276110e-01	ci left: 1.603411e-03	ci right 1.823709e-03	k: 941	n:550000
TCF7L2   550000 perm   289 sec   (1901 perm/sec)   p_kst 1.710909e-03   p_cons 5.642909e-02   p_joint 2.590909e-03

Joint ci ratio: 1.052780e-01	ci left: 2.339594e-03	ci right 2.601310e-03	k: 1382	n:560000
Cons ci ratio: 2.140220e-02	ci left: 5.591446e-02	ci right 5.712585e-02	k: 31650	n:560000
KS ci ratio: 1.267399e-01	ci left: 1.597254e-03	ci right 1.815096e-03	k: 954	n:560000
TCF7L2   560000 perm   297 sec   (1886 perm/sec)   p_kst 1.703571e-03   p_cons 5.651786e-02   p_joint 2.467857e-03

Joint ci ratio: 1.055869e-01	ci left: 2.284880e-03	ci right 2.541272e-03	k: 1374	n:570000
Cons ci ratio: 2.121370e-02	ci left: 5.591945e-02	ci right 5.712015e-02	k: 32215	n:570000
KS ci ratio: 1.258864e-01	ci left: 1.591318e-03	ci right 1.806780e-03	k: 967	n:570000
TCF7L2   570000 perm   305 sec   (1872 perm/sec)   p_kst 1.696491e-03   p_cons 5.651754e-02   p_joint 2.410526e-03

Joint ci ratio: 1.050543e-01	ci left: 2.268987e-03	ci right 2.522232e-03	k: 1388	n:580000
Cons ci ratio: 2.102772e-02	ci left: 5.593632e-02	ci right 5.712673e-02	k: 32787	n:580000
KS ci ratio: 1.247954e-01	ci left: 1.592273e-03	ci right 1.805857e-03	k: 984	n:580000
TCF7L2   580000 perm   312 sec   (1857 perm/sec)   p_kst 1.696552e-03   p_cons 5.652931e-02   p_joint 2.393103e-03

Joint ci ratio: 1.055912e-01	ci left: 2.207422e-03	ci right 2.455133e-03	k: 1374	n:590000
Cons ci ratio: 2.085117e-02	ci left: 5.592906e-02	ci right 5.710920e-02	k: 33345	n:590000
KS ci ratio: 1.239182e-01	ci left: 1.588276e-03	ci right 1.799716e-03	k: 998	n:590000
TCF7L2   590000 perm   320 sec   (1843 perm/sec)   p_kst 1.691525e-03   p_cons 5.651695e-02   p_joint 2.328814e-03

Joint ci ratio: 1.049450e-01	ci left: 2.198218e-03	ci right 2.443293e-03	k: 1391	n:600000
Cons ci ratio: 2.068095e-02	ci left: 5.591213e-02	ci right 5.708216e-02	k: 33897	n:600000
KS ci ratio: 1.229377e-01	ci left: 1.587648e-03	ci right 1.797211e-03	k: 1014	n:600000
TCF7L2   600000 perm   328 sec   (1828 perm/sec)   p_kst 1.690000e-03   p_cons 5.649500e-02   p_joint 2.318333e-03

Joint ci ratio: 1.097966e-01	ci left: 1.970728e-03	ci right 2.201255e-03	k: 1271	n:610000
Cons ci ratio: 2.050725e-02	ci left: 5.593494e-02	ci right 5.709551e-02	k: 34473	n:610000
KS ci ratio: 1.221583e-01	ci left: 1.582279e-03	ci right 1.789713e-03	k: 1027	n:610000
TCF7L2   610000 perm   336 sec   (1813 perm/sec)   p_kst 1.683607e-03   p_cons 5.651311e-02   p_joint 2.083607e-03

Joint ci ratio: 1.085235e-01	ci left: 1.986009e-03	ci right 2.215457e-03	k: 1301	n:620000
Cons ci ratio: 2.033940e-02	ci left: 5.594903e-02	ci right 5.710028e-02	k: 35044	n:620000
KS ci ratio: 1.203557e-01	ci left: 1.605243e-03	ci right 1.812361e-03	k: 1058	n:620000
TCF7L2   620000 perm   345 sec   (1799 perm/sec)   p_kst 1.706452e-03   p_cons 5.652258e-02   p_joint 2.098387e-03

Joint ci ratio: 1.052163e-01	ci left: 2.082716e-03	ci right 2.315551e-03	k: 1384	n:630000
Cons ci ratio: 2.017800e-02	ci left: 5.595007e-02	ci right 5.709210e-02	k: 35607	n:630000
KS ci ratio: 1.219834e-01	ci left: 1.536662e-03	ci right 1.737807e-03	k: 1030	n:630000
TCF7L2   630000 perm   353 sec   (1785 perm/sec)   p_kst 1.634921e-03   p_cons 5.651905e-02   p_joint 2.196825e-03

Joint ci ratio: 1.046142e-01	ci left: 2.074517e-03	ci right 2.305027e-03	k: 1400	n:640000
Cons ci ratio: 2.001365e-02	ci left: 5.598689e-02	ci right 5.712025e-02	k: 36193	n:640000
KS ci ratio: 1.212219e-01	ci left: 1.532346e-03	ci right 1.731584e-03	k: 1043	n:640000
TCF7L2   640000 perm   361 sec   (1770 perm/sec)   p_kst 1.629688e-03   p_cons 5.655156e-02   p_joint 2.187500e-03

Joint ci ratio: 1.041329e-01	ci left: 2.062078e-03	ci right 2.290087e-03	k: 1413	n:650000
Cons ci ratio: 1.984638e-02	ci left: 5.605936e-02	ci right 5.718460e-02	k: 36803	n:650000
KS ci ratio: 1.209337e-01	ci left: 1.516230e-03	ci right 1.712870e-03	k: 1048	n:650000
TCF7L2   650000 perm   370 sec   (1757 perm/sec)   p_kst 1.612308e-03   p_cons 5.662000e-02   p_joint 2.173846e-03

Joint ci ratio: 1.035492e-01	ci left: 2.054447e-03	ci right 2.280261e-03	k: 1429	n:660000
Cons ci ratio: 1.969356e-02	ci left: 5.607387e-02	ci right 5.719063e-02	k: 37376	n:660000
KS ci ratio: 1.201349e-01	ci left: 1.513829e-03	ci right 1.708769e-03	k: 1062	n:660000
TCF7L2   660000 perm   379 sec   (1743 perm/sec)   p_kst 1.609091e-03   p_cons 5.663030e-02   p_joint 2.165152e-03

Joint ci ratio: 1.044328e-01	ci left: 1.988891e-03	ci right 2.209479e-03	k: 1405	n:670000
Cons ci ratio: 1.955323e-02	ci left: 5.603895e-02	ci right 5.714698e-02	k: 37916	n:670000
KS ci ratio: 1.194628e-01	ci left: 1.508608e-03	ci right 1.701712e-03	k: 1074	n:670000
TCF7L2   670000 perm   388 sec   (1729 perm/sec)   p_kst 1.602985e-03   p_cons 5.659104e-02   p_joint 2.097015e-03

Joint ci ratio: 1.043601e-01	ci left: 1.962505e-03	ci right 2.180007e-03	k: 1407	n:680000
Cons ci ratio: 1.941585e-02	ci left: 5.600509e-02	ci right 5.710458e-02	k: 38456	n:680000
KS ci ratio: 1.183124e-01	ci left: 1.516387e-03	ci right 1.708487e-03	k: 1095	n:680000
TCF7L2   680000 perm   396 sec   (1715 perm/sec)   p_kst 1.610294e-03   p_cons 5.655294e-02   p_joint 2.069118e-03

Joint ci ratio: 1.035541e-01	ci left: 1.965119e-03	ci right 2.181125e-03	k: 1429	n:690000
Cons ci ratio: 1.927400e-02	ci left: 5.601263e-02	ci right 5.710414e-02	k: 39024	n:690000
KS ci ratio: 1.176172e-01	ci left: 1.512695e-03	ci right 1.703123e-03	k: 1108	n:690000
TCF7L2   690000 perm   405 sec   (1703 perm/sec)   p_kst 1.605797e-03   p_cons 5.655652e-02   p_joint 2.071014e-03

Joint ci ratio: 1.032666e-01	ci left: 1.948178e-03	ci right 2.161691e-03	k: 1437	n:700000
Cons ci ratio: 1.913394e-02	ci left: 5.602709e-02	ci right 5.711087e-02	k: 39597	n:700000
KS ci ratio: 1.164671e-01	ci left: 1.521594e-03	ci right 1.711140e-03	k: 1130	n:700000
TCF7L2   700000 perm   414 sec   (1689 perm/sec)   p_kst 1.614286e-03   p_cons 5.656714e-02   p_joint 2.052857e-03

Joint ci ratio: 1.029814e-01	ci left: 1.931715e-03	ci right 2.142804e-03	k: 1445	n:710000
Cons ci ratio: 1.900641e-02	ci left: 5.598789e-02	ci right 5.706362e-02	k: 40132	n:710000
KS ci ratio: 1.157025e-01	ci left: 1.520676e-03	ci right 1.708780e-03	k: 1145	n:710000
TCF7L2   710000 perm   424 sec   (1676 perm/sec)   p_kst 1.612676e-03   p_cons 5.652394e-02   p_joint 2.035211e-03

Joint ci ratio: 1.023816e-01	ci left: 1.927890e-03	ci right 2.137260e-03	k: 1462	n:720000
Cons ci ratio: 1.887599e-02	ci left: 5.598023e-02	ci right 5.704834e-02	k: 40689	n:720000
KS ci ratio: 1.148042e-01	ci left: 1.523835e-03	ci right 1.710767e-03	k: 1163	n:720000
TCF7L2   720000 perm   433 sec   (1664 perm/sec)   p_kst 1.615278e-03   p_cons 5.651250e-02   p_joint 2.030556e-03

Joint ci ratio: 1.016546e-01	ci left: 1.929513e-03	ci right 2.137484e-03	k: 1483	n:730000
Cons ci ratio: 1.874918e-02	ci left: 5.596734e-02	ci right 5.702796e-02	k: 41242	n:730000
KS ci ratio: 1.137821e-01	ci left: 1.530906e-03	ci right 1.716920e-03	k: 1184	n:730000
TCF7L2   730000 perm   442 sec   (1650 perm/sec)   p_kst 1.621918e-03   p_cons 5.649589e-02   p_joint 2.031507e-03

Joint ci ratio: 1.008422e-01	ci left: 1.935050e-03	ci right 2.141852e-03	k: 1507	n:740000
Cons ci ratio: 1.862702e-02	ci left: 5.594272e-02	ci right 5.699589e-02	k: 41786	n:740000
KS ci ratio: 1.127399e-01	ci left: 1.539106e-03	ci right 1.724290e-03	k: 1206	n:740000
TCF7L2   740000 perm   452 sec   (1638 perm/sec)   p_kst 1.629730e-03   p_cons 5.646757e-02   p_joint 2.036486e-03

Joint ci ratio: 1.002129e-01	ci left: 1.933946e-03	ci right 2.139264e-03	k: 1526	n:750000
Cons ci ratio: 1.850652e-02	ci left: 5.592276e-02	ci right 5.696867e-02	k: 42333	n:750000
KS ci ratio: 1.120919e-01	ci left: 1.536726e-03	ci right 1.720491e-03	k: 1220	n:750000
TCF7L2   750000 perm   462 sec   (1624 perm/sec)   p_kst 1.626667e-03   p_cons 5.644400e-02   p_joint 2.034667e-03

Joint ci ratio: 1.008449e-01	ci left: 1.884126e-03	ci right 2.085490e-03	k: 1507	n:760000
Cons ci ratio: 1.838287e-02	ci left: 5.593479e-02	ci right 5.697386e-02	k: 42904	n:760000
KS ci ratio: 1.116361e-01	ci left: 1.529295e-03	ci right 1.711379e-03	k: 1230	n:760000
TCF7L2   760000 perm   471 sec   (1613 perm/sec)   p_kst 1.618421e-03   p_cons 5.645263e-02   p_joint 1.982895e-03

Joint ci ratio: 9.640021e-02	ci left: 2.039533e-03	ci right 2.247358e-03	k: 1649	n:770000
Cons ci ratio: 1.826635e-02	ci left: 5.591937e-02	ci right 5.695150e-02	k: 43454	n:770000
KS ci ratio: 1.111859e-01	ci left: 1.522059e-03	ci right 1.702503e-03	k: 1240	n:770000
TCF7L2   770000 perm   481 sec   (1601 perm/sec)   p_kst 1.610390e-03   p_cons 5.643377e-02   p_joint 2.141558e-03

Joint ci ratio: 9.596539e-02	ci left: 2.032153e-03	ci right 2.238239e-03	k: 1664	n:780000
Cons ci ratio: 1.813783e-02	ci left: 5.598735e-02	ci right 5.701339e-02	k: 44069	n:780000
KS ci ratio: 1.104320e-01	ci left: 1.523737e-03	ci right 1.703074e-03	k: 1257	n:780000
TCF7L2   780000 perm   491 sec   (1589 perm/sec)   p_kst 1.611538e-03   p_cons 5.649872e-02   p_joint 2.133333e-03

Joint ci ratio: 9.545103e-02	ci left: 2.028669e-03	ci right 2.233237e-03	k: 1682	n:790000
Cons ci ratio: 1.802352e-02	ci left: 5.598556e-02	ci right 5.700504e-02	k: 44630	n:790000
KS ci ratio: 1.098660e-01	ci left: 1.520451e-03	ci right 1.698425e-03	k: 1270	n:790000
TCF7L2   790000 perm   501 sec   (1578 perm/sec)   p_kst 1.607595e-03   p_cons 5.649367e-02   p_joint 2.129114e-03

Joint ci ratio: 9.536717e-02	ci left: 2.006970e-03	ci right 2.209162e-03	k: 1685	n:800000
Cons ci ratio: 1.790652e-02	ci left: 5.601247e-02	ci right 5.702575e-02	k: 45214	n:800000
KS ci ratio: 1.090114e-01	ci left: 1.525761e-03	ci right 1.702879e-03	k: 1290	n:800000
TCF7L2   800000 perm   511 sec   (1567 perm/sec)   p_kst 1.612500e-03   p_cons 5.651750e-02   p_joint 2.106250e-03

Joint ci ratio: 9.503012e-02	ci left: 1.996654e-03	ci right 2.197057e-03	k: 1697	n:810000
Cons ci ratio: 1.779527e-02	ci left: 5.601783e-02	ci right 5.702485e-02	k: 45781	n:810000
KS ci ratio: 1.085503e-01	ci left: 1.520135e-03	ci right 1.695806e-03	k: 1301	n:810000
TCF7L2   810000 perm   521 sec   (1556 perm/sec)   p_kst 1.606173e-03   p_cons 5.651975e-02   p_joint 2.095062e-03

Joint ci ratio: 9.450298e-02	ci left: 1.994926e-03	ci right 2.193983e-03	k: 1716	n:820000
Cons ci ratio: 1.769153e-02	ci left: 5.599030e-02	ci right 5.699089e-02	k: 46321	n:820000
KS ci ratio: 1.078894e-01	ci left: 1.520581e-03	ci right 1.695165e-03	k: 1317	n:820000
TCF7L2   820000 perm   531 sec   (1545 perm/sec)   p_kst 1.606098e-03   p_cons 5.648902e-02   p_joint 2.092683e-03

Joint ci ratio: 9.395740e-02	ci left: 1.994420e-03	ci right 2.192214e-03	k: 1736	n:830000
Cons ci ratio: 1.759137e-02	ci left: 5.595264e-02	ci right 5.694684e-02	k: 46852	n:830000
KS ci ratio: 1.073614e-01	ci left: 1.517502e-03	ci right 1.690826e-03	k: 1330	n:830000
TCF7L2   830000 perm   541 sec   (1534 perm/sec)   p_kst 1.602410e-03   p_cons 5.644819e-02   p_joint 2.091566e-03

Joint ci ratio: 9.360821e-02	ci left: 1.985789e-03	ci right 2.181955e-03	k: 1749	n:840000
Cons ci ratio: 1.747941e-02	ci left: 5.599770e-02	ci right 5.698631e-02	k: 47452	n:840000
KS ci ratio: 1.065241e-01	ci left: 1.523768e-03	ci right 1.696365e-03	k: 1351	n:840000
TCF7L2   840000 perm   551 sec   (1524 perm/sec)   p_kst 1.608333e-03   p_cons 5.649048e-02   p_joint 2.082143e-03

Joint ci ratio: 9.445137e-02	ci left: 1.926811e-03	ci right 2.118961e-03	k: 1718	n:850000
Cons ci ratio: 1.737627e-02	ci left: 5.600072e-02	ci right 5.698348e-02	k: 48017	n:850000
KS ci ratio: 1.070818e-01	ci left: 1.489809e-03	ci right 1.659499e-03	k: 1337	n:850000
TCF7L2   850000 perm   562 sec   (1513 perm/sec)   p_kst 1.572941e-03   p_cons 5.649059e-02   p_joint 2.021176e-03

Joint ci ratio: 9.442497e-02	ci left: 1.905541e-03	ci right 2.095513e-03	k: 1719	n:860000
Cons ci ratio: 1.726853e-02	ci left: 5.604305e-02	ci right 5.702040e-02	k: 48616	n:860000
KS ci ratio: 1.064866e-01	ci left: 1.489462e-03	ci right 1.658110e-03	k: 1352	n:860000
TCF7L2   860000 perm   572 sec   (1503 perm/sec)   p_kst 1.572093e-03   p_cons 5.653023e-02   p_joint 1.998837e-03

Joint ci ratio: 9.379974e-02	ci left: 1.909453e-03	ci right 2.098485e-03	k: 1742	n:870000
Cons ci ratio: 1.716962e-02	ci left: 5.604207e-02	ci right 5.701375e-02	k: 49178	n:870000
KS ci ratio: 1.059012e-01	ci left: 1.489125e-03	ci right 1.656751e-03	k: 1367	n:870000
TCF7L2   870000 perm   583 sec   (1493 perm/sec)   p_kst 1.571264e-03   p_cons 5.652644e-02   p_joint 2.002299e-03

Joint ci ratio: 9.184168e-02	ci left: 1.971006e-03	ci right 2.161840e-03	k: 1817	n:880000
Cons ci ratio: 1.534206e-02	ci left: 6.853245e-02	ci right 6.959312e-02	k: 60774	n:880000
KS ci ratio: 1.054783e-01	ci left: 1.484372e-03	ci right 1.650754e-03	k: 1378	n:880000
TCF7L2   880000 perm   593 sec   (1484 perm/sec)   p_kst 1.565909e-03   p_cons 6.906136e-02   p_joint 2.064773e-03

Joint ci ratio: 9.316140e-02	ci left: 1.892879e-03	ci right 2.078926e-03	k: 1766	n:890000
Cons ci ratio: 1.525757e-02	ci left: 6.851906e-02	ci right 6.957363e-02	k: 61450	n:890000
KS ci ratio: 1.047214e-01	ci left: 1.489575e-03	ci right 1.655269e-03	k: 1398	n:890000
TCF7L2   890000 perm   604 sec   (1474 perm/sec)   p_kst 1.570787e-03   p_cons 6.904494e-02   p_joint 1.984270e-03

Joint ci ratio: 9.276873e-02	ci left: 1.888126e-03	ci right 2.072881e-03	k: 1781	n:900000
Cons ci ratio: 1.517054e-02	ci left: 6.853920e-02	ci right 6.958802e-02	k: 62156	n:900000
KS ci ratio: 1.044237e-01	ci left: 1.481681e-03	ci right 1.645998e-03	k: 1406	n:900000
TCF7L2   900000 perm   615 sec   (1464 perm/sec)   p_kst 1.562222e-03   p_cons 6.906222e-02   p_joint 1.978889e-03

Joint ci ratio: 9.212450e-02	ci left: 1.894215e-03	ci right 2.078209e-03	k: 1806	n:910000
Cons ci ratio: 1.508806e-02	ci left: 6.853264e-02	ci right 6.957560e-02	k: 62838	n:910000
KS ci ratio: 1.037984e-01	ci left: 1.483593e-03	ci right 1.647078e-03	k: 1423	n:910000
TCF7L2   910000 perm   626 sec   (1455 perm/sec)   p_kst 1.563736e-03   p_cons 6.905275e-02   p_joint 1.984615e-03

Joint ci ratio: 9.156866e-02	ci left: 1.896989e-03	ci right 2.080082e-03	k: 1828	n:920000
Cons ci ratio: 1.500375e-02	ci left: 6.855331e-02	ci right 6.959071e-02	k: 63545	n:920000
KS ci ratio: 1.031843e-01	ci left: 1.485467e-03	ci right 1.648131e-03	k: 1440	n:920000
TCF7L2   920000 perm   636 sec   (1446 perm/sec)   p_kst 1.565217e-03   p_cons 6.907065e-02   p_joint 1.986957e-03

Joint ci ratio: 9.109676e-02	ci left: 1.896555e-03	ci right 2.078612e-03	k: 1847	n:930000
Cons ci ratio: 1.492858e-02	ci left: 6.850712e-02	ci right 6.953858e-02	k: 64190	n:930000
KS ci ratio: 1.025809e-01	ci left: 1.487304e-03	ci right 1.649159e-03	k: 1457	n:930000
TCF7L2   930000 perm   647 sec   (1436 perm/sec)   p_kst 1.566667e-03   p_cons 6.902151e-02   p_joint 1.986022e-03

Joint ci ratio: 9.109772e-02	ci left: 1.876378e-03	ci right 2.056500e-03	k: 1847	n:940000
Cons ci ratio: 1.484419e-02	ci left: 6.855098e-02	ci right 6.957721e-02	k: 64919	n:940000
KS ci ratio: 1.019879e-01	ci left: 1.489104e-03	ci right 1.650162e-03	k: 1474	n:940000
TCF7L2   940000 perm   658 sec   (1428 perm/sec)   p_kst 1.568085e-03   p_cons 6.906277e-02   p_joint 1.964894e-03

Joint ci ratio: 9.092629e-02	ci left: 1.863827e-03	ci right 2.042389e-03	k: 1854	n:950000
Cons ci ratio: 1.476860e-02	ci left: 6.852994e-02	ci right 6.955059e-02	k: 65587	n:950000
KS ci ratio: 1.011678e-01	ci left: 1.498051e-03	ci right 1.658697e-03	k: 1498	n:950000
TCF7L2   950000 perm   670 sec   (1418 perm/sec)   p_kst 1.576842e-03   p_cons 6.903895e-02   p_joint 1.951579e-03

Joint ci ratio: 9.048839e-02	ci left: 1.862737e-03	ci right 2.040290e-03	k: 1872	n:960000
Cons ci ratio: 1.468867e-02	ci left: 6.855710e-02	ci right 6.957258e-02	k: 66301	n:960000
KS ci ratio: 1.006987e-01	ci left: 1.496661e-03	ci right 1.656370e-03	k: 1512	n:960000
TCF7L2   960000 perm   681 sec   (1409 perm/sec)   p_kst 1.575000e-03   p_cons 6.906354e-02   p_joint 1.950000e-03

Joint ci ratio: 8.981912e-02	ci left: 1.871749e-03	ci right 2.048772e-03	k: 1900	n:970000
Cons ci ratio: 1.461318e-02	ci left: 6.855598e-02	ci right 6.956618e-02	k: 66988	n:970000
KS ci ratio: 1.000722e-01	ci left: 1.500328e-03	ci right 1.659373e-03	k: 1531	n:970000
TCF7L2   970000 perm   693 sec   (1400 perm/sec)   p_kst 1.578351e-03   p_cons 6.905979e-02   p_joint 1.958763e-03

Joint ci ratio: 9.020115e-02	ci left: 1.836689e-03	ci right 2.011174e-03	k: 1884	n:980000
Cons ci ratio: 1.453435e-02	ci left: 6.859455e-02	ci right 6.959983e-02	k: 67714	n:980000
KS ci ratio: 9.819694e-02	ci left: 1.543732e-03	ci right 1.704135e-03	k: 1590	n:980000
TCF7L2   980000 perm   704 sec   (1391 perm/sec)   p_kst 1.622449e-03   p_cons 6.909592e-02   p_joint 1.922449e-03

Outputting figure to mutsig2_images.part000000000172/TCF7L2.20_2142_980000_0.0016224_0.069096_0.0019224.png
                gene_name: TCF7L2
               theta_stop: 0.098 
                    nperm: 980000 
                     p_ks: 0.0016 
        ci_ks_bounds_left: 0.0015 
       ci_ks_bounds_right: 0.0017 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.0019 
     ci_joint_bounds_left: 0.0018 
    ci_joint_bounds_right: 0.0020 

Current progress: 2 percent done.
TCERG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.223702e-02	ci left: 5.868075e-01	ci right 6.061363e-01	k: 5965	n:10000
KS ci ratio: 9.472717e-03	ci left: 9.402467e-01	ci right 9.492921e-01	k: 9449	n:10000
TCERG1   10000 perm   3 sec   (3833 perm/sec)   p_kst 9.449000e-01   p_cons 5.965000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TCERG1.15_3385_10000_0.9449_0.5965_1.png
                gene_name: TCERG1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 4 percent done.
TCHH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.056883e-02	ci left: 6.122110e-01	ci right 6.313180e-01	k: 6218	n:10000
Cons ci ratio: 4.346137e-02	ci left: 4.387185e-01	ci right 4.583115e-01	k: 4485	n:10000
KS ci ratio: 3.355961e-02	ci left: 5.672458e-01	ci right 5.867093e-01	k: 5770	n:10000
TCHH   10000 perm   3 sec   (3864 perm/sec)   p_kst 5.770000e-01   p_cons 4.485000e-01   p_joint 6.218000e-01

Outputting figure to mutsig2_images.part000000000172/TCHH.13_5840_10000_0.577_0.4485_0.6218.png
                gene_name: TCHH
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 6 percent done.
TCF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.114081e-02	ci left: 2.245456e-01	ci right 2.412103e-01	k: 2328	n:10000
Cons ci ratio: 4.711256e-02	ci left: 3.993415e-01	ci right 4.187115e-01	k: 4090	n:10000
KS ci ratio: 1.023114e-01	ci left: 1.214132e-01	ci right 1.346043e-01	k: 1279	n:10000
TCF12   10000 perm   2 sec   (4757 perm/sec)   p_kst 1.279000e-01   p_cons 4.090000e-01   p_joint 2.328000e-01

Joint ci ratio: 5.945325e-02	ci left: 1.732149e-01	ci right 1.838787e-01	k: 3570	n:20000
Cons ci ratio: 3.342724e-02	ci left: 4.005792e-01	ci right 4.142477e-01	k: 8148	n:20000
KS ci ratio: 7.191211e-02	ci left: 1.246790e-01	ci right 1.340291e-01	k: 2586	n:20000
TCF12   20000 perm   5 sec   (4167 perm/sec)   p_kst 1.293000e-01   p_cons 4.074000e-01   p_joint 1.785000e-01

Outputting figure to mutsig2_images.part000000000172/TCF12.10_2270_20000_0.1293_0.4074_0.1785.png
                gene_name: TCF12
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 8 percent done.
TCEB3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.097653e-02	ci left: 3.620179e-01	ci right 3.810570e-01	k: 3715	n:10000
Cons ci ratio: 1.680366e-02	ci left: 8.375528e-01	ci right 8.518458e-01	k: 8448	n:10000
KS ci ratio: 6.724969e-02	ci left: 2.449966e-01	ci right 2.621471e-01	k: 2535	n:10000
TCEB3B   10000 perm   2 sec   (5094 perm/sec)   p_kst 2.535000e-01   p_cons 8.448000e-01   p_joint 3.715000e-01

Outputting figure to mutsig2_images.part000000000172/TCEB3B.9_2266_10000_0.2535_0.8448_0.3715.png
                gene_name: TCEB3B
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 9 percent done.
TCF20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.558798e-02	ci left: 8.566152e-01	ci right 8.701724e-01	k: 8635	n:10000
Cons ci ratio: 3.467933e-02	ci left: 5.511066e-01	ci right 5.706579e-01	k: 5609	n:10000
KS ci ratio: 1.737651e-02	ci left: 8.283916e-01	ci right 8.430123e-01	k: 8358	n:10000
TCF20   10000 perm   3 sec   (3594 perm/sec)   p_kst 8.358000e-01   p_cons 5.609000e-01   p_joint 8.635000e-01

Outputting figure to mutsig2_images.part000000000172/TCF20.8_5921_10000_0.8358_0.5609_0.8635.png
                gene_name: TCF20
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 11 percent done.
TBC1D22A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.266192e-02	ci left: 7.408856e-01	ci right 7.579689e-01	k: 7495	n:10000
Cons ci ratio: 5.109680e-02	ci left: 3.609240e-01	ci right 3.799515e-01	k: 3704	n:10000
KS ci ratio: 2.758983e-02	ci left: 6.593767e-01	ci right 6.779249e-01	k: 6687	n:10000
TBC1D22A   10000 perm   2 sec   (5633 perm/sec)   p_kst 6.687000e-01   p_cons 3.704000e-01   p_joint 7.495000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D22A.7_1606_10000_0.6687_0.3704_0.7495.png
                gene_name: TBC1D22A
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 13 percent done.
TBX18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.094038e-02	ci left: 6.064853e-01	ci right 6.256470e-01	k: 6161	n:10000
Cons ci ratio: 6.913041e-02	ci left: 2.348172e-01	ci right 2.517326e-01	k: 2432	n:10000
KS ci ratio: 4.163696e-02	ci left: 4.599781e-01	ci right 4.796395e-01	k: 4698	n:10000
TBX18   10000 perm   2 sec   (5593 perm/sec)   p_kst 4.698000e-01   p_cons 2.432000e-01   p_joint 6.161000e-01

Outputting figure to mutsig2_images.part000000000172/TBX18.7_1856_10000_0.4698_0.2432_0.6161.png
                gene_name: TBX18
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 15 percent done.
TCHHL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.398338e-02	ci left: 4.328329e-01	ci right 4.524006e-01	k: 4426	n:10000
Cons ci ratio: 8.609581e-02	ci left: 1.642567e-01	ci right 1.791350e-01	k: 1716	n:10000
KS ci ratio: 6.927536e-03	ci left: 9.662559e-01	ci right 9.730668e-01	k: 9698	n:10000
TCHHL1   10000 perm   2 sec   (5139 perm/sec)   p_kst 9.698000e-01   p_cons 1.716000e-01   p_joint 4.426000e-01

Outputting figure to mutsig2_images.part000000000172/TCHHL1.7_2723_10000_0.9698_0.1716_0.4426.png
                gene_name: TCHHL1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 17 percent done.
TBC1D25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.456575e-02	ci left: 7.090681e-01	ci right 7.268048e-01	k: 7180	n:10000
Cons ci ratio: 5.884004e-02	ci left: 2.982644e-01	ci right 3.164479e-01	k: 3073	n:10000
KS ci ratio: 1.147777e-02	ci left: 9.156427e-01	ci right 9.263105e-01	k: 9211	n:10000
TBC1D25   10000 perm   2 sec   (5874 perm/sec)   p_kst 9.211000e-01   p_cons 3.073000e-01   p_joint 7.180000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D25.6_2091_10000_0.9211_0.3073_0.718.png
                gene_name: TBC1D25
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 19 percent done.
TBC1D4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.377012e-02	ci left: 4.352269e-01	ci right 4.548052e-01	k: 4450	n:10000
Cons ci ratio: 1.587099e-02	ci left: 8.522284e-01	ci right 8.659617e-01	k: 8592	n:10000
KS ci ratio: 7.184476e-02	ci left: 2.210904e-01	ci right 2.376675e-01	k: 2293	n:10000
TBC1D4   10000 perm   2 sec   (4412 perm/sec)   p_kst 2.293000e-01   p_cons 8.592000e-01   p_joint 4.450000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D4.6_3981_10000_0.2293_0.8592_0.445.png
                gene_name: TBC1D4
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 21 percent done.
TBC1D9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.742056e-02	ci left: 1.600322e-01	ci right 1.747621e-01	k: 1673	n:10000
Cons ci ratio: 2.805805e-02	ci left: 6.518275e-01	ci right 6.704785e-01	k: 6612	n:10000
KS ci ratio: 9.450053e-02	ci left: 1.398191e-01	ci right 1.537873e-01	k: 1467	n:10000
TBC1D9   10000 perm   2 sec   (4616 perm/sec)   p_kst 1.467000e-01   p_cons 6.612000e-01   p_joint 1.673000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D9.6_3885_10000_0.1467_0.6612_0.1673.png
                gene_name: TBC1D9
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 23 percent done.
TBK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.046495e-02	ci left: 6.138185e-01	ci right 6.329096e-01	k: 6234	n:10000
Cons ci ratio: 2.356728e-02	ci left: 7.257273e-01	ci right 7.431359e-01	k: 7345	n:10000
KS ci ratio: 4.452217e-02	ci left: 4.268489e-01	ci right 4.463880e-01	k: 4366	n:10000
TBK1   10000 perm   2 sec   (5026 perm/sec)   p_kst 4.366000e-01   p_cons 7.345000e-01   p_joint 6.234000e-01

Outputting figure to mutsig2_images.part000000000172/TBK1.6_2270_10000_0.4366_0.7345_0.6234.png
                gene_name: TBK1
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 25 percent done.
TBL1X
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.088296e-02	ci left: 2.258292e-01	ci right 2.425259e-01	k: 2341	n:10000
Cons ci ratio: 1.211259e-01	ci left: 8.902986e-02	ci right 1.006074e-01	k: 947	n:10000
KS ci ratio: 5.522995e-02	ci left: 3.256490e-01	ci right 3.442472e-01	k: 3349	n:10000
TBL1X   10000 perm   2 sec   (5473 perm/sec)   p_kst 3.349000e-01   p_cons 9.470000e-02   p_joint 2.341000e-01

Joint ci ratio: 5.249014e-02	ci left: 2.122941e-01	ci right 2.237880e-01	k: 4360	n:20000
Cons ci ratio: 8.840785e-02	ci left: 8.552962e-02	ci right 9.349019e-02	k: 1789	n:20000
KS ci ratio: 3.924267e-02	ci left: 3.262691e-01	ci right 3.393795e-01	k: 6656	n:20000
TBL1X   20000 perm   4 sec   (4778 perm/sec)   p_kst 3.328000e-01   p_cons 8.945000e-02   p_joint 2.180000e-01

Outputting figure to mutsig2_images.part000000000172/TBL1X.6_1794_20000_0.3328_0.08945_0.218.png
                gene_name: TBL1X
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.089 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 26 percent done.
TBL1XR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.780486e-02	ci left: 2.419322e-01	ci right 2.590133e-01	k: 2504	n:10000
Cons ci ratio: 1.158783e-02	ci left: 9.142005e-01	ci right 9.249535e-01	k: 9197	n:10000
KS ci ratio: 8.818083e-02	ci left: 1.576751e-01	ci right 1.723206e-01	k: 1649	n:10000
TBL1XR1   10000 perm   2 sec   (5318 perm/sec)   p_kst 1.649000e-01   p_cons 9.197000e-01   p_joint 2.504000e-01

Outputting figure to mutsig2_images.part000000000172/TBL1XR1.6_1601_10000_0.1649_0.9197_0.2504.png
                gene_name: TBL1XR1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 28 percent done.
TCERG1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.313660e-01	ci left: 1.151417e-02	ci right 1.617538e-02	k: 137	n:10000
Cons ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
KS ci ratio: 8.423637e-02	ci left: 1.704491e-01	ci right 1.855389e-01	k: 1779	n:10000
TCERG1L   10000 perm   2 sec   (5301 perm/sec)   p_kst 1.779000e-01   p_cons 5.000000e-04   p_joint 1.370000e-02

Joint ci ratio: 2.984783e-01	ci left: 7.274556e-03	ci right 9.871356e-03	k: 170	n:20000
Cons ci ratio: 1.181570e+00	ci left: 2.397946e-04	ci right 9.193249e-04	k: 10	n:20000
KS ci ratio: 6.093339e-02	ci left: 1.662002e-01	ci right 1.766956e-01	k: 3428	n:20000
TCERG1L   20000 perm   4 sec   (4605 perm/sec)   p_kst 1.714000e-01   p_cons 5.000000e-04   p_joint 8.500000e-03

Joint ci ratio: 2.059352e-01	ci left: 1.070373e-02	ci right 1.319213e-02	k: 357	n:30000
Cons ci ratio: 8.990099e-01	ci left: 3.556356e-04	ci right 9.480936e-04	k: 18	n:30000
KS ci ratio: 4.920751e-02	ci left: 1.702862e-01	ci right 1.789102e-01	k: 5237	n:30000
TCERG1L   30000 perm   7 sec   (4418 perm/sec)   p_kst 1.745667e-01   p_cons 6.000000e-04   p_joint 1.190000e-02

Joint ci ratio: 2.045243e-01	ci left: 8.168963e-03	ci right 1.005334e-02	k: 363	n:40000
Cons ci ratio: 8.551789e-01	ci left: 3.054389e-04	ci right 7.721043e-04	k: 20	n:40000
KS ci ratio: 4.291314e-02	ci left: 1.688832e-01	ci right 1.763144e-01	k: 6903	n:40000
TCERG1L   40000 perm   9 sec   (4302 perm/sec)   p_kst 1.725750e-01   p_cons 5.000000e-04   p_joint 9.075000e-03

Joint ci ratio: 1.954589e-01	ci left: 7.199768e-03	ci right 8.778158e-03	k: 398	n:50000
Cons ci ratio: 7.999666e-01	ci left: 2.916222e-04	ci right 6.901464e-04	k: 23	n:50000
KS ci ratio: 3.841771e-02	ci left: 1.690188e-01	ci right 1.756593e-01	k: 8616	n:50000
TCERG1L   50000 perm   12 sec   (4211 perm/sec)   p_kst 1.723200e-01   p_cons 4.600000e-04   p_joint 7.960000e-03

Joint ci ratio: 1.888018e-01	ci left: 6.459656e-03	ci right 7.822004e-03	k: 427	n:60000
Cons ci ratio: 7.542283e-01	ci left: 2.830866e-04	ci right 6.348697e-04	k: 26	n:60000
KS ci ratio: 3.504874e-02	ci left: 1.694845e-01	ci right 1.755472e-01	k: 10350	n:60000
TCERG1L   60000 perm   15 sec   (4132 perm/sec)   p_kst 1.725000e-01   p_cons 4.333333e-04   p_joint 7.116667e-03

Joint ci ratio: 1.829706e-01	ci left: 5.918082e-03	ci right 7.123373e-03	k: 455	n:70000
Cons ci ratio: 6.721064e-01	ci left: 3.245313e-04	ci right 6.619979e-04	k: 33	n:70000
KS ci ratio: 3.239888e-02	ci left: 1.701476e-01	ci right 1.757652e-01	k: 12106	n:70000
TCERG1L   70000 perm   17 sec   (4061 perm/sec)   p_kst 1.729429e-01   p_cons 4.714286e-04   p_joint 6.500000e-03

Joint ci ratio: 1.822436e-01	ci left: 5.225862e-03	ci right 6.285464e-03	k: 459	n:80000
Cons ci ratio: 6.357530e-01	ci left: 3.256629e-04	ci right 6.374395e-04	k: 37	n:80000
KS ci ratio: 3.029127e-02	ci left: 1.704715e-01	ci right 1.757272e-01	k: 13847	n:80000
TCERG1L   80000 perm   20 sec   (3989 perm/sec)   p_kst 1.730875e-01   p_cons 4.625000e-04   p_joint 5.737500e-03

Joint ci ratio: 1.980653e-01	ci left: 3.904121e-03	ci right 4.772748e-03	k: 389	n:90000
Cons ci ratio: 5.976483e-01	ci left: 3.363523e-04	ci right 6.307460e-04	k: 42	n:90000
KS ci ratio: 2.858886e-02	ci left: 1.703239e-01	ci right 1.752750e-01	k: 15551	n:90000
TCERG1L   90000 perm   23 sec   (3920 perm/sec)   p_kst 1.727889e-01   p_cons 4.666667e-04   p_joint 4.322222e-03

Joint ci ratio: 2.112957e-01	ci left: 3.067628e-03	ci right 3.801640e-03	k: 342	n:100000
Cons ci ratio: 5.842247e-01	ci left: 3.197223e-04	ci right 5.906350e-04	k: 44	n:100000
KS ci ratio: 2.712463e-02	ci left: 1.704214e-01	ci right 1.751176e-01	k: 17276	n:100000
TCERG1L   100000 perm   26 sec   (3853 perm/sec)   p_kst 1.727600e-01   p_cons 4.400000e-04   p_joint 3.420000e-03

Joint ci ratio: 2.119497e-01	ci left: 2.771488e-03	ci right 3.436956e-03	k: 340	n:110000
Cons ci ratio: 5.716660e-01	ci left: 3.061774e-04	ci right 5.577570e-04	k: 46	n:110000
KS ci ratio: 2.585714e-02	ci left: 1.705880e-01	ci right 1.750657e-01	k: 19010	n:110000
TCERG1L   110000 perm   29 sec   (3786 perm/sec)   p_kst 1.728182e-01   p_cons 4.181818e-04   p_joint 3.090909e-03

Joint ci ratio: 2.062912e-01	ci left: 2.690561e-03	ci right 3.317172e-03	k: 359	n:120000
Cons ci ratio: 5.908514e-01	ci left: 2.593394e-04	ci right 4.826426e-04	k: 43	n:120000
KS ci ratio: 2.476808e-02	ci left: 1.705485e-01	ci right 1.748339e-01	k: 20722	n:120000
TCERG1L   120000 perm   32 sec   (3723 perm/sec)   p_kst 1.726833e-01   p_cons 3.583333e-04   p_joint 2.991667e-03

Joint ci ratio: 2.060283e-01	ci left: 2.490863e-03	ci right 3.070131e-03	k: 360	n:130000
Cons ci ratio: 5.656966e-01	ci left: 2.656566e-04	ci right 4.807408e-04	k: 47	n:130000
KS ci ratio: 2.379251e-02	ci left: 1.706794e-01	ci right 1.747968e-01	k: 22455	n:130000
TCERG1L   130000 perm   35 sec   (3665 perm/sec)   p_kst 1.727308e-01   p_cons 3.615385e-04   p_joint 2.769231e-03

Joint ci ratio: 2.178621e-01	ci left: 2.055860e-03	ci right 2.565104e-03	k: 322	n:140000
Cons ci ratio: 5.542707e-01	ci left: 2.589428e-04	ci right 4.626925e-04	k: 49	n:140000
KS ci ratio: 2.295768e-02	ci left: 1.703748e-01	ci right 1.743387e-01	k: 24129	n:140000
TCERG1L   140000 perm   39 sec   (3598 perm/sec)   p_kst 1.723500e-01   p_cons 3.500000e-04   p_joint 2.300000e-03

Joint ci ratio: 2.348872e-01	ci left: 1.635747e-03	ci right 2.077198e-03	k: 277	n:150000
Cons ci ratio: 5.542775e-01	ci left: 2.416793e-04	ci right 4.318479e-04	k: 49	n:150000
KS ci ratio: 2.220028e-02	ci left: 1.701729e-01	ci right 1.739998e-01	k: 25812	n:150000
TCERG1L   150000 perm   42 sec   (3546 perm/sec)   p_kst 1.720800e-01   p_cons 3.266667e-04   p_joint 1.846667e-03

Joint ci ratio: 2.383615e-01	ci left: 1.486463e-03	ci right 1.894435e-03	k: 269	n:160000
Cons ci ratio: 5.542834e-01	ci left: 2.265738e-04	ci right 4.048588e-04	k: 49	n:160000
KS ci ratio: 2.150140e-02	ci left: 1.701537e-01	ci right 1.738582e-01	k: 27520	n:160000
TCERG1L   160000 perm   46 sec   (3494 perm/sec)   p_kst 1.720000e-01   p_cons 3.062500e-04   p_joint 1.681250e-03

Joint ci ratio: 2.388167e-01	ci left: 1.393485e-03	ci right 1.776776e-03	k: 268	n:170000
Cons ci ratio: 5.333581e-01	ci left: 2.335416e-04	ci right 4.077763e-04	k: 53	n:170000
KS ci ratio: 2.085557e-02	ci left: 1.702615e-01	ci right 1.738556e-01	k: 29249	n:170000
TCERG1L   170000 perm   49 sec   (3442 perm/sec)   p_kst 1.720529e-01   p_cons 3.117647e-04   p_joint 1.576471e-03

Joint ci ratio: 2.406257e-01	ci left: 1.295173e-03	ci right 1.654524e-03	k: 264	n:180000
Cons ci ratio: 5.102555e-01	ci left: 2.446857e-04	ci right 4.165273e-04	k: 58	n:180000
KS ci ratio: 2.028760e-02	ci left: 1.700378e-01	ci right 1.735283e-01	k: 30920	n:180000
TCERG1L   180000 perm   53 sec   (3392 perm/sec)   p_kst 1.717778e-01   p_cons 3.222222e-04   p_joint 1.466667e-03

Joint ci ratio: 2.550111e-01	ci left: 1.083830e-03	ci right 1.405383e-03	k: 235	n:190000
Cons ci ratio: 4.937904e-01	ci left: 2.501933e-04	ci right 4.183029e-04	k: 62	n:190000
KS ci ratio: 1.975009e-02	ci left: 1.700329e-01	ci right 1.734298e-01	k: 32628	n:190000
TCERG1L   190000 perm   57 sec   (3343 perm/sec)   p_kst 1.717263e-01   p_cons 3.263158e-04   p_joint 1.236842e-03

Joint ci ratio: 2.492689e-01	ci left: 1.081163e-03	ci right 1.393582e-03	k: 246	n:200000
Cons ci ratio: 4.752878e-01	ci left: 2.596295e-04	ci right 4.254189e-04	k: 67	n:200000
KS ci ratio: 1.925181e-02	ci left: 1.700495e-01	ci right 1.733600e-01	k: 34340	n:200000
TCERG1L   200000 perm   61 sec   (3296 perm/sec)   p_kst 1.717000e-01   p_cons 3.350000e-04   p_joint 1.230000e-03

Joint ci ratio: 2.081695e-01	ci left: 1.510277e-03	ci right 1.865610e-03	k: 353	n:210000
Cons ci ratio: 4.556094e-01	ci left: 2.724874e-04	ci right 4.370592e-04	k: 73	n:210000
KS ci ratio: 1.891657e-02	ci left: 1.681632e-01	ci right 1.713793e-01	k: 35651	n:210000
TCERG1L   210000 perm   65 sec   (3251 perm/sec)   p_kst 1.697667e-01   p_cons 3.476190e-04   p_joint 1.680952e-03

Joint ci ratio: 2.027973e-01	ci left: 1.523549e-03	ci right 1.871609e-03	k: 372	n:220000
Cons ci ratio: 4.381886e-01	ci left: 2.843056e-04	ci right 4.475146e-04	k: 79	n:220000
KS ci ratio: 1.847352e-02	ci left: 1.683238e-01	ci right 1.714668e-01	k: 37376	n:220000
TCERG1L   220000 perm   69 sec   (3205 perm/sec)   p_kst 1.698909e-01   p_cons 3.590909e-04   p_joint 1.690909e-03

Joint ci ratio: 2.067277e-01	ci left: 1.399549e-03	ci right 1.726262e-03	k: 358	n:230000
Cons ci ratio: 4.328135e-01	ci left: 2.796865e-04	ci right 4.377013e-04	k: 81	n:230000
KS ci ratio: 1.805687e-02	ci left: 1.685232e-01	ci right 1.715982e-01	k: 39113	n:230000
TCERG1L   230000 perm   73 sec   (3160 perm/sec)   p_kst 1.700565e-01   p_cons 3.521739e-04   p_joint 1.556522e-03

Joint ci ratio: 2.482905e-01	ci left: 9.087724e-04	ci right 1.170185e-03	k: 248	n:240000
Cons ci ratio: 4.108489e-01	ci left: 3.015547e-04	ci right 4.609189e-04	k: 90	n:240000
KS ci ratio: 1.768677e-02	ci left: 1.683953e-01	ci right 1.714044e-01	k: 40775	n:240000
TCERG1L   240000 perm   77 sec   (3115 perm/sec)   p_kst 1.698958e-01   p_cons 3.750000e-04   p_joint 1.033333e-03

Joint ci ratio: 2.473035e-01	ci left: 8.799231e-04	ci right 1.131876e-03	k: 250	n:250000
Cons ci ratio: 4.021063e-01	ci left: 3.038566e-04	ci right 4.601094e-04	k: 94	n:250000
KS ci ratio: 1.732377e-02	ci left: 1.685174e-01	ci right 1.714662e-01	k: 42497	n:250000
TCERG1L   250000 perm   81 sec   (3074 perm/sec)   p_kst 1.699880e-01   p_cons 3.760000e-04   p_joint 1.000000e-03

Joint ci ratio: 2.503211e-01	ci left: 8.244387e-04	ci right 1.063834e-03	k: 244	n:260000
Cons ci ratio: 3.979407e-01	ci left: 2.990880e-04	ci right 4.508756e-04	k: 96	n:260000
KS ci ratio: 1.698433e-02	ci left: 1.685962e-01	ci right 1.714880e-01	k: 44210	n:260000
TCERG1L   260000 perm   86 sec   (3034 perm/sec)   p_kst 1.700385e-01   p_cons 3.692308e-04   p_joint 9.384615e-04

Joint ci ratio: 2.493091e-01	ci left: 8.008464e-04	ci right 1.032305e-03	k: 246	n:270000
Cons ci ratio: 3.919267e-01	ci left: 2.980183e-04	ci right 4.463857e-04	k: 99	n:270000
KS ci ratio: 1.666605e-02	ci left: 1.686365e-01	ci right 1.714743e-01	k: 45914	n:270000
TCERG1L   270000 perm   90 sec   (2996 perm/sec)   p_kst 1.700519e-01   p_cons 3.666667e-04   p_joint 9.111111e-04

Joint ci ratio: 2.799015e-01	ci left: 6.021334e-04	ci right 8.012938e-04	k: 195	n:280000
Cons ci ratio: 3.861773e-01	ci left: 2.970409e-04	ci right 4.422008e-04	k: 102	n:280000
KS ci ratio: 1.635303e-02	ci left: 1.688808e-01	ci right 1.716688e-01	k: 47676	n:280000
TCERG1L   280000 perm   95 sec   (2958 perm/sec)   p_kst 1.702714e-01   p_cons 3.642857e-04   p_joint 6.964286e-04

Joint ci ratio: 1.371183e-01	ci left: 2.617602e-03	ci right 3.006232e-03	k: 814	n:290000
Cons ci ratio: 3.771313e-01	ci left: 3.023857e-04	ci right 4.458399e-04	k: 107	n:290000
KS ci ratio: 1.606444e-02	ci left: 1.689782e-01	ci right 1.717181e-01	k: 49400	n:290000
TCERG1L   290000 perm   99 sec   (2920 perm/sec)   p_kst 1.703448e-01   p_cons 3.689655e-04   p_joint 2.806897e-03

Joint ci ratio: 1.357946e-01	ci left: 2.581858e-03	ci right 2.961182e-03	k: 830	n:300000
Cons ci ratio: 3.720005e-01	ci left: 3.013647e-04	ci right 4.419159e-04	k: 110	n:300000
KS ci ratio: 1.579900e-02	ci left: 1.689199e-01	ci right 1.716132e-01	k: 51079	n:300000
TCERG1L   300000 perm   104 sec   (2881 perm/sec)   p_kst 1.702633e-01   p_cons 3.666667e-04   p_joint 2.766667e-03

Joint ci ratio: 1.327136e-01	ci left: 2.620157e-03	ci right 2.995685e-03	k: 869	n:310000
Cons ci ratio: 3.638942e-01	ci left: 3.062813e-04	ci right 4.452740e-04	k: 115	n:310000
KS ci ratio: 1.562217e-02	ci left: 1.674990e-01	ci right 1.701395e-01	k: 52333	n:310000
TCERG1L   310000 perm   109 sec   (2846 perm/sec)   p_kst 1.688161e-01   p_cons 3.709677e-04   p_joint 2.803226e-03

Joint ci ratio: 1.349945e-01	ci left: 2.450672e-03	ci right 2.808430e-03	k: 840	n:320000
Cons ci ratio: 3.577777e-01	ci left: 3.080770e-04	ci right 4.449876e-04	k: 119	n:320000
KS ci ratio: 1.536813e-02	ci left: 1.676656e-01	ci right 1.702654e-01	k: 54068	n:320000
TCERG1L   320000 perm   114 sec   (2812 perm/sec)   p_kst 1.689625e-01   p_cons 3.718750e-04   p_joint 2.625000e-03

Joint ci ratio: 1.356482e-01	ci left: 2.352980e-03	ci right 2.698273e-03	k: 832	n:330000
Cons ci ratio: 3.533881e-01	ci left: 3.070201e-04	ci right 4.414029e-04	k: 122	n:330000
KS ci ratio: 1.514127e-02	ci left: 1.675415e-01	ci right 1.701007e-01	k: 55710	n:330000
TCERG1L   330000 perm   119 sec   (2779 perm/sec)   p_kst 1.688182e-01   p_cons 3.696970e-04   p_joint 2.521212e-03

Joint ci ratio: 1.338923e-01	ci left: 2.346298e-03	ci right 2.685799e-03	k: 854	n:340000
Cons ci ratio: 3.491561e-01	ci left: 3.060352e-04	ci right 4.380195e-04	k: 125	n:340000
KS ci ratio: 1.491901e-02	ci left: 1.675218e-01	ci right 1.700427e-01	k: 57385	n:340000
TCERG1L   340000 perm   124 sec   (2746 perm/sec)   p_kst 1.687794e-01   p_cons 3.676471e-04   p_joint 2.511765e-03

Joint ci ratio: 1.334286e-01	ci left: 2.295827e-03	ci right 2.626783e-03	k: 860	n:350000
Cons ci ratio: 3.450727e-01	ci left: 3.051155e-04	ci right 4.348205e-04	k: 128	n:350000
KS ci ratio: 1.470716e-02	ci left: 1.674863e-01	ci right 1.699706e-01	k: 59054	n:350000
TCERG1L   350000 perm   129 sec   (2714 perm/sec)   p_kst 1.687257e-01   p_cons 3.657143e-04   p_joint 2.457143e-03

Joint ci ratio: 1.317564e-01	ci left: 2.291137e-03	ci right 2.616954e-03	k: 882	n:360000
Cons ci ratio: 3.411292e-01	ci left: 3.042554e-04	ci right 4.317908e-04	k: 131	n:360000
KS ci ratio: 1.450221e-02	ci left: 1.674891e-01	ci right 1.699385e-01	k: 60736	n:360000
TCERG1L   360000 perm   134 sec   (2682 perm/sec)   p_kst 1.687111e-01   p_cons 3.638889e-04   p_joint 2.450000e-03

Joint ci ratio: 1.307261e-01	ci left: 2.265808e-03	ci right 2.585307e-03	k: 896	n:370000
Cons ci ratio: 3.398456e-01	ci left: 2.985037e-04	ci right 4.230540e-04	k: 132	n:370000
KS ci ratio: 1.430423e-02	ci left: 1.675188e-01	ci right 1.699350e-01	k: 62428	n:370000
TCERG1L   370000 perm   140 sec   (2652 perm/sec)   p_kst 1.687243e-01   p_cons 3.567568e-04   p_joint 2.421622e-03

Joint ci ratio: 1.319899e-01	ci left: 2.162907e-03	ci right 2.471076e-03	k: 879	n:380000
Cons ci ratio: 3.324288e-01	ci left: 3.051056e-04	ci right 4.290378e-04	k: 138	n:380000
KS ci ratio: 1.411784e-02	ci left: 1.674738e-01	ci right 1.698576e-01	k: 64092	n:380000
TCERG1L   380000 perm   145 sec   (2622 perm/sec)   p_kst 1.686632e-01   p_cons 3.631579e-04   p_joint 2.313158e-03

Joint ci ratio: 1.314708e-01	ci left: 2.124803e-03	ci right 2.426258e-03	k: 886	n:390000
Cons ci ratio: 3.288988e-01	ci left: 3.043361e-04	ci right 4.263655e-04	k: 141	n:390000
KS ci ratio: 1.393677e-02	ci left: 1.674671e-01	ci right 1.698199e-01	k: 65770	n:390000
TCERG1L   390000 perm   151 sec   (2590 perm/sec)   p_kst 1.686410e-01   p_cons 3.615385e-04   p_joint 2.271795e-03

Joint ci ratio: 1.392411e-01	ci left: 1.839784e-03	ci right 2.117510e-03	k: 790	n:400000
Cons ci ratio: 3.200062e-01	ci left: 3.150995e-04	ci right 4.373289e-04	k: 149	n:400000
KS ci ratio: 1.376433e-02	ci left: 1.674235e-01	ci right 1.697464e-01	k: 67433	n:400000
TCERG1L   400000 perm   156 sec   (2562 perm/sec)   p_kst 1.685825e-01   p_cons 3.725000e-04   p_joint 1.975000e-03

Joint ci ratio: 1.410424e-01	ci left: 1.747835e-03	ci right 2.015381e-03	k: 770	n:410000
Cons ci ratio: 3.178947e-01	ci left: 3.119017e-04	ci right 4.319297e-04	k: 151	n:410000
KS ci ratio: 1.359069e-02	ci left: 1.675354e-01	ci right 1.698303e-01	k: 69159	n:410000
TCERG1L   410000 perm   162 sec   (2535 perm/sec)   p_kst 1.686805e-01   p_cons 3.682927e-04   p_joint 1.878049e-03

Joint ci ratio: 1.388963e-01	ci left: 1.761362e-03	ci right 2.026537e-03	k: 794	n:420000
Cons ci ratio: 3.148035e-01	ci left: 3.110512e-04	ci right 4.293539e-04	k: 154	n:420000
KS ci ratio: 1.343509e-02	ci left: 1.673999e-01	ci right 1.696665e-01	k: 70783	n:420000
TCERG1L   420000 perm   167 sec   (2508 perm/sec)   p_kst 1.685310e-01   p_cons 3.666667e-04   p_joint 1.890476e-03

Joint ci ratio: 1.379465e-01	ci left: 1.745095e-03	ci right 2.005876e-03	k: 805	n:430000
Cons ci ratio: 3.088811e-01	ci left: 3.166793e-04	ci right 4.344105e-04	k: 160	n:430000
KS ci ratio: 1.328251e-02	ci left: 1.673173e-01	ci right 1.695569e-01	k: 72427	n:430000
TCERG1L   430000 perm   173 sec   (2481 perm/sec)   p_kst 1.684349e-01   p_cons 3.720930e-04   p_joint 1.872093e-03

Joint ci ratio: 1.368482e-01	ci left: 1.733963e-03	ci right 1.990850e-03	k: 818	n:440000
Cons ci ratio: 3.023765e-01	ci left: 3.241716e-04	ci right 4.416625e-04	k: 167	n:440000
KS ci ratio: 1.313682e-02	ci left: 1.672001e-01	ci right 1.694133e-01	k: 74054	n:440000
TCERG1L   440000 perm   179 sec   (2454 perm/sec)   p_kst 1.683045e-01   p_cons 3.795455e-04   p_joint 1.859091e-03

Joint ci ratio: 1.352879e-01	ci left: 1.736215e-03	ci right 1.990267e-03	k: 837	n:450000
Cons ci ratio: 2.971166e-01	ci left: 3.292988e-04	ci right 4.461805e-04	k: 173	n:450000
KS ci ratio: 1.298983e-02	ci left: 1.672168e-01	ci right 1.694053e-01	k: 75739	n:450000
TCERG1L   450000 perm   185 sec   (2428 perm/sec)   p_kst 1.683089e-01   p_cons 3.844444e-04   p_joint 1.860000e-03

Joint ci ratio: 1.462808e-01	ci left: 1.444663e-03	ci right 1.674732e-03	k: 716	n:460000
Cons ci ratio: 2.601151e-01	ci left: 4.293467e-04	ci right 5.596880e-04	k: 226	n:460000
KS ci ratio: 1.284468e-02	ci left: 1.672979e-01	ci right 1.694628e-01	k: 77454	n:460000
TCERG1L   460000 perm   192 sec   (2401 perm/sec)   p_kst 1.683783e-01   p_cons 4.913043e-04   p_joint 1.556522e-03

Joint ci ratio: 1.478402e-01	ci left: 1.383181e-03	ci right 1.606015e-03	k: 701	n:470000
Cons ci ratio: 2.578534e-01	ci left: 4.281698e-04	ci right 5.568417e-04	k: 230	n:470000
KS ci ratio: 1.270468e-02	ci left: 1.673672e-01	ci right 1.695092e-01	k: 79165	n:470000
TCERG1L   470000 perm   198 sec   (2376 perm/sec)   p_kst 1.684362e-01   p_cons 4.893617e-04   p_joint 1.491489e-03

Joint ci ratio: 1.477371e-01	ci left: 1.356370e-03	ci right 1.574719e-03	k: 702	n:480000
Cons ci ratio: 2.535003e-01	ci left: 4.348485e-04	ci right 5.629729e-04	k: 238	n:480000
KS ci ratio: 1.257617e-02	ci left: 1.672779e-01	ci right 1.693970e-01	k: 80801	n:480000
TCERG1L   480000 perm   204 sec   (2353 perm/sec)   p_kst 1.683354e-01   p_cons 4.958333e-04   p_joint 1.462500e-03

Joint ci ratio: 1.534167e-01	ci left: 1.228521e-03	ci right 1.434590e-03	k: 651	n:490000
Cons ci ratio: 2.519247e-01	ci left: 4.317087e-04	ci right 5.579932e-04	k: 241	n:490000
KS ci ratio: 1.244603e-02	ci left: 1.673145e-01	ci right 1.694119e-01	k: 82497	n:490000
TCERG1L   490000 perm   210 sec   (2329 perm/sec)   p_kst 1.683612e-01   p_cons 4.918367e-04   p_joint 1.328571e-03

Joint ci ratio: 1.559541e-01	ci left: 1.163573e-03	ci right 1.362278e-03	k: 630	n:500000
Cons ci ratio: 2.478603e-01	ci left: 4.380728e-04	ci right 5.638330e-04	k: 249	n:500000
KS ci ratio: 1.232496e-02	ci left: 1.672340e-01	ci right 1.693099e-01	k: 84135	n:500000
TCERG1L   500000 perm   217 sec   (2305 perm/sec)   p_kst 1.682700e-01   p_cons 4.980000e-04   p_joint 1.260000e-03

Joint ci ratio: 1.553410e-01	ci left: 1.150180e-03	ci right 1.345753e-03	k: 635	n:510000
Cons ci ratio: 2.468755e-01	ci left: 4.331615e-04	ci right 5.569418e-04	k: 251	n:510000
KS ci ratio: 1.220231e-02	ci left: 1.672721e-01	ci right 1.693277e-01	k: 85832	n:510000
TCERG1L   510000 perm   223 sec   (2284 perm/sec)   p_kst 1.682980e-01   p_cons 4.921569e-04   p_joint 1.245098e-03

Joint ci ratio: 1.156177e-01	ci left: 2.078210e-03	ci right 2.335079e-03	k: 1146	n:520000
Cons ci ratio: 2.421172e-01	ci left: 4.428845e-04	ci right 5.666376e-04	k: 261	n:520000
KS ci ratio: 1.207985e-02	ci left: 1.673876e-01	ci right 1.694238e-01	k: 87570	n:520000
TCERG1L   520000 perm   230 sec   (2262 perm/sec)   p_kst 1.684038e-01   p_cons 5.019231e-04   p_joint 2.203846e-03

Joint ci ratio: 1.178551e-01	ci left: 1.960228e-03	ci right 2.207529e-03	k: 1103	n:530000
Cons ci ratio: 2.398394e-01	ci left: 4.433925e-04	ci right 5.659488e-04	k: 266	n:530000
KS ci ratio: 1.196317e-02	ci left: 1.674480e-01	ci right 1.694651e-01	k: 89281	n:530000
TCERG1L   530000 perm   237 sec   (2240 perm/sec)   p_kst 1.684547e-01   p_cons 5.018868e-04   p_joint 2.081132e-03

Joint ci ratio: 1.227445e-01	ci left: 1.769448e-03	ci right 2.002615e-03	k: 1017	n:540000
Cons ci ratio: 2.389469e-01	ci left: 4.386630e-04	ci right 5.593939e-04	k: 268	n:540000
KS ci ratio: 1.184840e-02	ci left: 1.675395e-01	ci right 1.695382e-01	k: 91010	n:540000
TCERG1L   540000 perm   243 sec   (2219 perm/sec)   p_kst 1.685370e-01   p_cons 4.962963e-04   p_joint 1.883333e-03

Joint ci ratio: 1.214975e-01	ci left: 1.774292e-03	ci right 2.005551e-03	k: 1038	n:550000
Cons ci ratio: 2.376259e-01	ci left: 4.358161e-04	ci right 5.550028e-04	k: 271	n:550000
KS ci ratio: 1.174000e-02	ci left: 1.675533e-01	ci right 1.695338e-01	k: 92698	n:550000
TCERG1L   550000 perm   250 sec   (2199 perm/sec)   p_kst 1.685418e-01   p_cons 4.927273e-04   p_joint 1.887273e-03

Joint ci ratio: 1.208026e-01	ci left: 1.763387e-03	ci right 1.991816e-03	k: 1050	n:560000
Cons ci ratio: 2.337887e-01	ci left: 4.431563e-04	ci right 5.621105e-04	k: 280	n:560000
KS ci ratio: 1.163266e-02	ci left: 1.676113e-01	ci right 1.695742e-01	k: 94411	n:560000
TCERG1L   560000 perm   257 sec   (2179 perm/sec)   p_kst 1.685911e-01   p_cons 5.000000e-04   p_joint 1.875000e-03

Joint ci ratio: 1.197253e-01	ci left: 1.764781e-03	ci right 1.991207e-03	k: 1069	n:570000
Cons ci ratio: 2.321425e-01	ci left: 4.419896e-04	ci right 5.596753e-04	k: 284	n:570000
KS ci ratio: 1.153247e-02	ci left: 1.675641e-01	ci right 1.695095e-01	k: 96065	n:570000
TCERG1L   570000 perm   264 sec   (2159 perm/sec)   p_kst 1.685351e-01   p_cons 4.982456e-04   p_joint 1.875439e-03

Joint ci ratio: 1.191154e-01	ci left: 1.752752e-03	ci right 1.976409e-03	k: 1080	n:580000
Cons ci ratio: 2.305306e-01	ci left: 4.408660e-04	ci right 5.573213e-04	k: 288	n:580000
KS ci ratio: 1.142878e-02	ci left: 1.676665e-01	ci right 1.695954e-01	k: 97805	n:580000
TCERG1L   580000 perm   271 sec   (2139 perm/sec)   p_kst 1.686293e-01   p_cons 4.965517e-04   p_joint 1.862069e-03

Joint ci ratio: 1.198413e-01	ci left: 1.701666e-03	ci right 1.920221e-03	k: 1067	n:590000
Cons ci ratio: 2.277880e-01	ci left: 4.445771e-04	ci right 5.604194e-04	k: 295	n:590000
KS ci ratio: 1.133346e-02	ci left: 1.676268e-01	ci right 1.695391e-01	k: 99463	n:590000
TCERG1L   590000 perm   278 sec   (2120 perm/sec)   p_kst 1.685814e-01   p_cons 5.000000e-04   p_joint 1.808475e-03

Joint ci ratio: 1.201252e-01	ci left: 1.665220e-03	ci right 1.879637e-03	k: 1062	n:600000
Cons ci ratio: 2.258882e-01	ci left: 4.450273e-04	ci right 5.598851e-04	k: 300	n:600000
KS ci ratio: 1.123954e-02	ci left: 1.676119e-01	ci right 1.695080e-01	k: 101135	n:600000
TCERG1L   600000 perm   286 sec   (2101 perm/sec)   p_kst 1.685583e-01   p_cons 5.000000e-04   p_joint 1.770000e-03

Joint ci ratio: 1.223372e-01	ci left: 1.577511e-03	ci right 1.784645e-03	k: 1024	n:610000
Cons ci ratio: 2.244022e-01	ci left: 4.439193e-04	ci right 5.576333e-04	k: 304	n:610000
KS ci ratio: 1.114453e-02	ci left: 1.676825e-01	ci right 1.695633e-01	k: 102859	n:610000
TCERG1L   610000 perm   293 sec   (2082 perm/sec)   p_kst 1.686213e-01   p_cons 4.983607e-04   p_joint 1.678689e-03

Joint ci ratio: 1.212769e-01	ci left: 1.580215e-03	ci right 1.785777e-03	k: 1042	n:620000
Cons ci ratio: 2.218703e-01	ci left: 4.474188e-04	ci right 5.605594e-04	k: 311	n:620000
KS ci ratio: 1.105831e-02	ci left: 1.675883e-01	ci right 1.694535e-01	k: 104482	n:620000
TCERG1L   620000 perm   300 sec   (2064 perm/sec)   p_kst 1.685194e-01   p_cons 5.016129e-04   p_joint 1.680645e-03

Joint ci ratio: 1.208153e-01	ci left: 1.567445e-03	ci right 1.770514e-03	k: 1050	n:630000
Cons ci ratio: 2.194221e-01	ci left: 4.508140e-04	ci right 5.633857e-04	k: 318	n:630000
KS ci ratio: 1.097132e-02	ci left: 1.675669e-01	ci right 1.694171e-01	k: 106149	n:630000
TCERG1L   630000 perm   308 sec   (2046 perm/sec)   p_kst 1.684905e-01   p_cons 5.047619e-04   p_joint 1.666667e-03

Joint ci ratio: 1.195698e-01	ci left: 1.576296e-03	ci right 1.778258e-03	k: 1072	n:640000
Cons ci ratio: 2.173871e-01	ci left: 4.526323e-04	ci right 5.644698e-04	k: 324	n:640000
KS ci ratio: 1.088217e-02	ci left: 1.676538e-01	ci right 1.694898e-01	k: 107885	n:640000
TCERG1L   640000 perm   316 sec   (2028 perm/sec)   p_kst 1.685703e-01   p_cons 5.062500e-04   p_joint 1.675000e-03

Joint ci ratio: 1.255107e-01	ci left: 1.404396e-03	ci right 1.593938e-03	k: 973	n:650000
Cons ci ratio: 2.160617e-01	ci left: 4.514885e-04	ci right 5.622730e-04	k: 328	n:650000
KS ci ratio: 1.080061e-02	ci left: 1.675969e-01	ci right 1.694184e-01	k: 109529	n:650000
TCERG1L   650000 perm   324 sec   (2009 perm/sec)   p_kst 1.685062e-01   p_cons 5.046154e-04   p_joint 1.496923e-03

Joint ci ratio: 1.248083e-01	ci left: 1.399261e-03	ci right 1.586976e-03	k: 984	n:660000
Cons ci ratio: 2.141180e-01	ci left: 4.532491e-04	ci right 5.633335e-04	k: 334	n:660000
KS ci ratio: 1.072306e-02	ci left: 1.674843e-01	ci right 1.692914e-01	k: 111135	n:660000
TCERG1L   660000 perm   332 sec   (1991 perm/sec)   p_kst 1.683864e-01   p_cons 5.060606e-04   p_joint 1.490909e-03

Joint ci ratio: 1.241175e-01	ci left: 1.394283e-03	ci right 1.580219e-03	k: 995	n:670000
Cons ci ratio: 2.128511e-01	ci left: 4.521351e-04	ci right 5.612145e-04	k: 338	n:670000
KS ci ratio: 1.064563e-02	ci left: 1.674153e-01	ci right 1.692085e-01	k: 112768	n:670000
TCERG1L   670000 perm   340 sec   (1973 perm/sec)   p_kst 1.683104e-01   p_cons 5.044776e-04   p_joint 1.485075e-03

Joint ci ratio: 1.231323e-01	ci left: 1.396581e-03	ci right 1.581237e-03	k: 1011	n:680000
Cons ci ratio: 2.112986e-01	ci left: 4.524485e-04	ci right 5.607042e-04	k: 343	n:680000
KS ci ratio: 1.056768e-02	ci left: 1.674056e-01	ci right 1.691855e-01	k: 114440	n:680000
TCERG1L   680000 perm   347 sec   (1957 perm/sec)   p_kst 1.682941e-01   p_cons 5.044118e-04   p_joint 1.486765e-03

Joint ci ratio: 1.260355e-01	ci left: 1.311748e-03	ci right 1.489582e-03	k: 965	n:690000
Cons ci ratio: 2.097796e-01	ci left: 4.527556e-04	ci right 5.602060e-04	k: 348	n:690000
KS ci ratio: 1.049207e-02	ci left: 1.673788e-01	ci right 1.691457e-01	k: 116100	n:690000
TCERG1L   690000 perm   356 sec   (1941 perm/sec)   p_kst 1.682609e-01   p_cons 5.043478e-04   p_joint 1.398551e-03

Joint ci ratio: 1.269614e-01	ci left: 1.273640e-03	ci right 1.447671e-03	k: 951	n:700000
Cons ci ratio: 2.077066e-01	ci left: 4.557650e-04	ci right 5.627249e-04	k: 355	n:700000
KS ci ratio: 1.041928e-02	ci left: 1.673201e-01	ci right 1.690740e-01	k: 117737	n:700000
TCERG1L   700000 perm   364 sec   (1926 perm/sec)   p_kst 1.681957e-01   p_cons 5.071429e-04   p_joint 1.358571e-03

Joint ci ratio: 1.266964e-01	ci left: 1.261156e-03	ci right 1.433095e-03	k: 955	n:710000
Cons ci ratio: 2.054110e-01	ci left: 4.600307e-04	ci right 5.666487e-04	k: 363	n:710000
KS ci ratio: 1.034689e-02	ci left: 1.672927e-01	ci right 1.690340e-01	k: 119395	n:710000
TCERG1L   710000 perm   372 sec   (1910 perm/sec)   p_kst 1.681620e-01   p_cons 5.112676e-04   p_joint 1.345070e-03

Joint ci ratio: 1.261046e-01	ci left: 1.255744e-03	ci right 1.426086e-03	k: 964	n:720000
Cons ci ratio: 2.040146e-01	ci left: 4.602299e-04	ci right 5.660785e-04	k: 368	n:720000
KS ci ratio: 1.027742e-02	ci left: 1.672272e-01	ci right 1.689561e-01	k: 121025	n:720000
TCERG1L   720000 perm   380 sec   (1894 perm/sec)   p_kst 1.680903e-01   p_cons 5.111111e-04   p_joint 1.338889e-03

Joint ci ratio: 1.255210e-01	ci left: 1.250483e-03	ci right 1.419267e-03	k: 973	n:730000
Cons ci ratio: 2.026463e-01	ci left: 4.604259e-04	ci right 5.655215e-04	k: 373	n:730000
KS ci ratio: 1.020708e-02	ci left: 1.672250e-01	ci right 1.689420e-01	k: 122700	n:730000
TCERG1L   730000 perm   388 sec   (1879 perm/sec)   p_kst 1.680822e-01   p_cons 5.109589e-04   p_joint 1.332877e-03

Joint ci ratio: 1.244394e-01	ci left: 1.255840e-03	ci right 1.423779e-03	k: 990	n:740000
Cons ci ratio: 2.021071e-01	ci left: 4.567696e-04	ci right 5.607189e-04	k: 375	n:740000
KS ci ratio: 1.013934e-02	ci left: 1.671906e-01	ci right 1.688958e-01	k: 124351	n:740000
TCERG1L   740000 perm   397 sec   (1864 perm/sec)   p_kst 1.680419e-01   p_cons 5.067568e-04   p_joint 1.337838e-03

Joint ci ratio: 1.237547e-01	ci left: 1.253306e-03	ci right 1.419917e-03	k: 1001	n:750000
Cons ci ratio: 2.010407e-01	ci left: 4.557435e-04	ci right 5.588449e-04	k: 379	n:750000
KS ci ratio: 1.007025e-02	ci left: 1.672317e-01	ci right 1.689256e-01	k: 126058	n:750000
TCERG1L   750000 perm   406 sec   (1849 perm/sec)   p_kst 1.680773e-01   p_cons 5.053333e-04   p_joint 1.334667e-03

Joint ci ratio: 1.238176e-01	ci left: 1.235540e-03	ci right 1.399878e-03	k: 1000	n:760000
Cons ci ratio: 1.999910e-01	ci left: 4.547458e-04	ci right 5.570188e-04	k: 383	n:760000
KS ci ratio: 1.000028e-02	ci left: 1.673347e-01	ci right 1.690178e-01	k: 127813	n:760000
TCERG1L   760000 perm   414 sec   (1834 perm/sec)   p_kst 1.681750e-01   p_cons 5.039474e-04   p_joint 1.315789e-03

Joint ci ratio: 1.232651e-01	ci left: 1.230821e-03	ci right 1.393747e-03	k: 1009	n:770000
Cons ci ratio: 1.989576e-01	ci left: 4.537753e-04	ci right 5.552387e-04	k: 387	n:770000
KS ci ratio: 9.933141e-03	ci left: 1.673962e-01	ci right 1.690686e-01	k: 129538	n:770000
TCERG1L   770000 perm   423 sec   (1820 perm/sec)   p_kst 1.682312e-01   p_cons 5.025974e-04   p_joint 1.310390e-03

Joint ci ratio: 1.232051e-01	ci left: 1.216283e-03	ci right 1.377201e-03	k: 1010	n:780000
Cons ci ratio: 1.984472e-01	ci left: 4.503941e-04	ci right 5.508119e-04	k: 389	n:780000
KS ci ratio: 9.867966e-03	ci left: 1.674383e-01	ci right 1.691000e-01	k: 131249	n:780000
TCERG1L   780000 perm   432 sec   (1806 perm/sec)   p_kst 1.682679e-01   p_cons 4.987179e-04   p_joint 1.294872e-03

Joint ci ratio: 1.241940e-01	ci left: 1.181259e-03	ci right 1.338890e-03	k: 994	n:790000
Cons ci ratio: 1.966896e-01	ci left: 4.531155e-04	ci right 5.531380e-04	k: 396	n:790000
KS ci ratio: 9.803657e-03	ci left: 1.674907e-01	ci right 1.691421e-01	k: 132969	n:790000
TCERG1L   790000 perm   441 sec   (1792 perm/sec)   p_kst 1.683152e-01   p_cons 5.012658e-04   p_joint 1.258228e-03

Joint ci ratio: 1.243201e-01	ci left: 1.164070e-03	ci right 1.319577e-03	k: 992	n:800000
Cons ci ratio: 1.952198e-01	ci left: 4.545836e-04	ci right 5.540912e-04	k: 402	n:800000
KS ci ratio: 9.739894e-03	ci left: 1.675618e-01	ci right 1.692031e-01	k: 134705	n:800000
TCERG1L   800000 perm   450 sec   (1777 perm/sec)   p_kst 1.683813e-01   p_cons 5.025000e-04   p_joint 1.240000e-03

Joint ci ratio: 1.236990e-01	ci left: 1.161662e-03	ci right 1.316015e-03	k: 1002	n:810000
Cons ci ratio: 1.944975e-01	ci left: 4.524944e-04	ci right 5.511348e-04	k: 405	n:810000
KS ci ratio: 9.678724e-03	ci left: 1.675918e-01	ci right 1.692229e-01	k: 136409	n:810000
TCERG1L   810000 perm   459 sec   (1764 perm/sec)   p_kst 1.684062e-01   p_cons 5.000000e-04   p_joint 1.237037e-03

Joint ci ratio: 1.227238e-01	ci left: 1.166406e-03	ci right 1.320079e-03	k: 1018	n:820000
Cons ci ratio: 1.930759e-01	ci left: 4.539383e-04	ci right 5.520853e-04	k: 411	n:820000
KS ci ratio: 9.619613e-03	ci left: 1.675942e-01	ci right 1.692154e-01	k: 138091	n:820000
TCERG1L   820000 perm   469 sec   (1750 perm/sec)   p_kst 1.684037e-01   p_cons 5.012195e-04   p_joint 1.241463e-03

Joint ci ratio: 1.217712e-01	ci left: 1.171041e-03	ci right 1.324040e-03	k: 1034	n:830000
Cons ci ratio: 1.912279e-01	ci left: 4.576442e-04	ci right 5.555352e-04	k: 419	n:830000
KS ci ratio: 9.562025e-03	ci left: 1.675835e-01	ci right 1.691948e-01	k: 139762	n:830000
TCERG1L   830000 perm   478 sec   (1736 perm/sec)   p_kst 1.683880e-01   p_cons 5.048193e-04   p_joint 1.245783e-03

Joint ci ratio: 1.212455e-01	ci left: 1.167488e-03	ci right 1.319318e-03	k: 1043	n:840000
Cons ci ratio: 1.900997e-01	ci left: 4.578643e-04	ci right 5.551578e-04	k: 424	n:840000
KS ci ratio: 9.503358e-03	ci left: 1.676347e-01	ci right 1.692366e-01	k: 141485	n:840000
TCERG1L   840000 perm   488 sec   (1723 perm/sec)   p_kst 1.684345e-01   p_cons 5.047619e-04   p_joint 1.241667e-03

Joint ci ratio: 1.107927e-01	ci left: 1.389096e-03	ci right 1.553155e-03	k: 1249	n:850000
Cons ci ratio: 1.887718e-01	ci left: 4.592018e-04	ci right 5.560197e-04	k: 430	n:850000
KS ci ratio: 9.448892e-03	ci left: 1.675921e-01	ci right 1.691843e-01	k: 143129	n:850000
TCERG1L   850000 perm   497 sec   (1710 perm/sec)   p_kst 1.683871e-01   p_cons 5.058824e-04   p_joint 1.469412e-03

Joint ci ratio: 1.108825e-01	ci left: 1.370682e-03	ci right 1.532706e-03	k: 1247	n:860000
Cons ci ratio: 1.883356e-01	ci left: 4.560779e-04	ci right 5.519897e-04	k: 432	n:860000
KS ci ratio: 9.391218e-03	ci left: 1.676735e-01	ci right 1.692567e-01	k: 144879	n:860000
TCERG1L   860000 perm   507 sec   (1698 perm/sec)   p_kst 1.684640e-01   p_cons 5.023256e-04   p_joint 1.450000e-03

Joint ci ratio: 1.110619e-01	ci left: 1.350456e-03	ci right 1.510365e-03	k: 1243	n:870000
Cons ci ratio: 1.874718e-01	ci left: 4.552171e-04	ci right 5.504588e-04	k: 436	n:870000
KS ci ratio: 9.336310e-03	ci left: 1.677014e-01	ci right 1.692755e-01	k: 146584	n:870000
TCERG1L   870000 perm   516 sec   (1685 perm/sec)   p_kst 1.684874e-01   p_cons 5.011494e-04   p_joint 1.428736e-03

Joint ci ratio: 1.102230e-01	ci left: 1.356103e-03	ci right 1.515389e-03	k: 1262	n:880000
Cons ci ratio: 1.866198e-01	ci left: 4.543767e-04	ci right 5.489616e-04	k: 440	n:880000
KS ci ratio: 9.282618e-03	ci left: 1.677207e-01	ci right 1.692860e-01	k: 148282	n:880000
TCERG1L   880000 perm   526 sec   (1673 perm/sec)   p_kst 1.685023e-01   p_cons 5.000000e-04   p_joint 1.434091e-03

Joint ci ratio: 1.094456e-01	ci left: 1.360535e-03	ci right 1.519142e-03	k: 1280	n:890000
Cons ci ratio: 1.859885e-01	ci left: 4.524849e-04	ci right 5.463214e-04	k: 443	n:890000
KS ci ratio: 9.231359e-03	ci left: 1.676937e-01	ci right 1.692500e-01	k: 149939	n:890000
TCERG1L   890000 perm   536 sec   (1661 perm/sec)   p_kst 1.684708e-01   p_cons 4.977528e-04   p_joint 1.438202e-03

Joint ci ratio: 1.091059e-01	ci left: 1.354064e-03	ci right 1.511395e-03	k: 1288	n:900000
Cons ci ratio: 1.849500e-01	ci left: 4.527549e-04	ci right 5.460643e-04	k: 448	n:900000
KS ci ratio: 9.179847e-03	ci left: 1.677006e-01	ci right 1.692482e-01	k: 151626	n:900000
TCERG1L   900000 perm   546 sec   (1649 perm/sec)   p_kst 1.684733e-01   p_cons 4.977778e-04   p_joint 1.431111e-03

Joint ci ratio: 1.085182e-01	ci left: 1.354150e-03	ci right 1.510589e-03	k: 1302	n:910000
Cons ci ratio: 1.837264e-01	ci left: 4.540688e-04	ci right 5.469609e-04	k: 454	n:910000
KS ci ratio: 9.130478e-03	ci left: 1.676678e-01	ci right 1.692068e-01	k: 153277	n:910000
TCERG1L   910000 perm   556 sec   (1637 perm/sec)   p_kst 1.684363e-01   p_cons 4.989011e-04   p_joint 1.430769e-03

Joint ci ratio: 1.079809e-01	ci left: 1.353179e-03	ci right 1.508683e-03	k: 1315	n:920000
Cons ci ratio: 1.835252e-01	ci left: 4.501702e-04	ci right 5.421527e-04	k: 455	n:920000
KS ci ratio: 9.079888e-03	ci left: 1.676977e-01	ci right 1.692283e-01	k: 154985	n:920000
TCERG1L   920000 perm   566 sec   (1625 perm/sec)   p_kst 1.684620e-01   p_cons 4.945652e-04   p_joint 1.429348e-03

Joint ci ratio: 1.073707e-01	ci left: 1.354323e-03	ci right 1.509024e-03	k: 1330	n:930000
Cons ci ratio: 1.827256e-01	ci left: 4.494335e-04	ci right 5.408211e-04	k: 459	n:930000
KS ci ratio: 9.031065e-03	ci left: 1.676979e-01	ci right 1.692203e-01	k: 156666	n:930000
TCERG1L   930000 perm   576 sec   (1614 perm/sec)   p_kst 1.684581e-01   p_cons 4.935484e-04   p_joint 1.430108e-03

Joint ci ratio: 1.076961e-01	ci left: 1.331633e-03	ci right 1.484232e-03	k: 1322	n:940000
Cons ci ratio: 1.809635e-01	ci left: 4.537911e-04	ci right 5.450774e-04	k: 468	n:940000
KS ci ratio: 8.983704e-03	ci left: 1.676769e-01	ci right 1.691911e-01	k: 158327	n:940000
TCERG1L   940000 perm   586 sec   (1603 perm/sec)   p_kst 1.684330e-01   p_cons 4.978723e-04   p_joint 1.406383e-03

Joint ci ratio: 1.077377e-01	ci left: 1.316591e-03	ci right 1.467528e-03	k: 1321	n:950000
Cons ci ratio: 1.800065e-01	ci left: 4.540397e-04	ci right 5.448404e-04	k: 473	n:950000
KS ci ratio: 8.935300e-03	ci left: 1.677121e-01	ci right 1.692184e-01	k: 160041	n:950000
TCERG1L   950000 perm   597 sec   (1592 perm/sec)   p_kst 1.684642e-01   p_cons 4.978947e-04   p_joint 1.390526e-03

Joint ci ratio: 1.071316e-01	ci left: 1.318082e-03	ci right 1.468286e-03	k: 1336	n:960000
Cons ci ratio: 1.792519e-01	ci left: 4.532895e-04	ci right 5.435188e-04	k: 477	n:960000
KS ci ratio: 8.888397e-03	ci left: 1.677236e-01	ci right 1.692221e-01	k: 161733	n:960000
TCERG1L   960000 perm   607 sec   (1581 perm/sec)   p_kst 1.684719e-01   p_cons 4.968750e-04   p_joint 1.391667e-03

Joint ci ratio: 1.088581e-01	ci left: 1.262362e-03	ci right 1.408683e-03	k: 1294	n:970000
Cons ci ratio: 1.785066e-01	ci left: 4.525554e-04	ci right 5.422237e-04	k: 481	n:970000
KS ci ratio: 8.842649e-03	ci left: 1.677216e-01	ci right 1.692123e-01	k: 163412	n:970000
TCERG1L   970000 perm   618 sec   (1570 perm/sec)   p_kst 1.684660e-01   p_cons 4.958763e-04   p_joint 1.334021e-03

Joint ci ratio: 1.086490e-01	ci left: 1.254444e-03	ci right 1.399550e-03	k: 1299	n:980000
Cons ci ratio: 1.774058e-01	ci left: 4.537873e-04	ci right 5.430857e-04	k: 487	n:980000
KS ci ratio: 8.797407e-03	ci left: 1.677258e-01	ci right 1.692088e-01	k: 165097	n:980000
TCERG1L   980000 perm   628 sec   (1560 perm/sec)   p_kst 1.684663e-01   p_cons 4.969388e-04   p_joint 1.325510e-03

Joint ci ratio: 1.094536e-01	ci left: 1.223103e-03	ci right 1.365699e-03	k: 1280	n:990000
Cons ci ratio: 1.768632e-01	ci left: 4.520995e-04	ci right 5.407645e-04	k: 490	n:990000
KS ci ratio: 8.752127e-03	ci left: 1.677531e-01	ci right 1.692287e-01	k: 166805	n:990000
TCERG1L   990000 perm   639 sec   (1550 perm/sec)   p_kst 1.684899e-01   p_cons 4.949495e-04   p_joint 1.292929e-03

Joint ci ratio: 1.088183e-01	ci left: 1.225462e-03	ci right 1.367451e-03	k: 1295	n:1000000
Cons ci ratio: 1.756156e-01	ci left: 4.542698e-04	ci right 5.426653e-04	k: 497	n:1000000
KS ci ratio: 8.709030e-03	ci left: 1.677319e-01	ci right 1.692000e-01	k: 168465	n:1000000
TCERG1L   1000000 perm   649 sec   (1540 perm/sec)   p_kst 1.684650e-01   p_cons 4.970000e-04   p_joint 1.295000e-03

Joint ci ratio: 1.083595e-01	ci left: 1.223924e-03	ci right 1.365099e-03	k: 1306	n:1010000
Cons ci ratio: 1.747405e-01	ci left: 4.545055e-04	ci right 5.424597e-04	k: 502	n:1010000
KS ci ratio: 8.667269e-03	ci left: 1.676884e-01	ci right 1.691491e-01	k: 170102	n:1010000
TCERG1L   1010000 perm   660 sec   (1530 perm/sec)   p_kst 1.684178e-01   p_cons 4.970297e-04   p_joint 1.293069e-03

Joint ci ratio: 1.081532e-01	ci left: 1.216694e-03	ci right 1.356751e-03	k: 1311	n:1020000
Cons ci ratio: 1.731976e-01	ci left: 4.584890e-04	ci right 5.463487e-04	k: 511	n:1020000
KS ci ratio: 8.625770e-03	ci left: 1.676566e-01	ci right 1.691100e-01	k: 171750	n:1020000
TCERG1L   1020000 perm   671 sec   (1520 perm/sec)   p_kst 1.683824e-01   p_cons 5.009804e-04   p_joint 1.285294e-03

Joint ci ratio: 1.077844e-01	ci left: 1.213383e-03	ci right 1.352552e-03	k: 1320	n:1030000
Cons ci ratio: 1.723580e-01	ci left: 4.586821e-04	ci right 5.461085e-04	k: 516	n:1030000
KS ci ratio: 8.585696e-03	ci left: 1.675983e-01	ci right 1.690444e-01	k: 173370	n:1030000
TCERG1L   1030000 perm   682 sec   (1510 perm/sec)   p_kst 1.683204e-01   p_cons 5.009709e-04   p_joint 1.281553e-03

Joint ci ratio: 1.074597e-01	ci left: 1.209201e-03	ci right 1.347446e-03	k: 1328	n:1040000
Cons ci ratio: 1.716952e-01	ci left: 4.579522e-04	ci right 5.448690e-04	k: 520	n:1040000
KS ci ratio: 8.544794e-03	ci left: 1.675862e-01	ci right 1.690253e-01	k: 175037	n:1040000
TCERG1L   1040000 perm   693 sec   (1500 perm/sec)   p_kst 1.683048e-01   p_cons 5.000000e-04   p_joint 1.276923e-03

Joint ci ratio: 1.070979e-01	ci left: 1.206026e-03	ci right 1.343415e-03	k: 1337	n:1050000
Cons ci ratio: 1.708772e-01	ci left: 4.581485e-04	ci right 5.446456e-04	k: 525	n:1050000
KS ci ratio: 8.504327e-03	ci left: 1.675791e-01	ci right 1.690113e-01	k: 176709	n:1050000
TCERG1L   1050000 perm   704 sec   (1491 perm/sec)   p_kst 1.682943e-01   p_cons 5.000000e-04   p_joint 1.273333e-03

Joint ci ratio: 1.077455e-01	ci left: 1.179959e-03	ci right 1.315243e-03	k: 1321	n:1060000
Cons ci ratio: 1.699108e-01	ci left: 4.592454e-04	ci right 5.454090e-04	k: 531	n:1060000
KS ci ratio: 8.462976e-03	ci left: 1.676202e-01	ci right 1.690457e-01	k: 178432	n:1060000
TCERG1L   1060000 perm   716 sec   (1481 perm/sec)   p_kst 1.683321e-01   p_cons 5.009434e-04   p_joint 1.246226e-03

Joint ci ratio: 1.075427e-01	ci left: 1.173478e-03	ci right 1.307750e-03	k: 1326	n:1070000
Cons ci ratio: 1.688037e-01	ci left: 4.612182e-04	ci right 5.471307e-04	k: 538	n:1070000
KS ci ratio: 8.424583e-03	ci left: 1.675822e-01	ci right 1.690009e-01	k: 180071	n:1070000
TCERG1L   1070000 perm   727 sec   (1472 perm/sec)   p_kst 1.682907e-01   p_cons 5.028037e-04   p_joint 1.239252e-03

Joint ci ratio: 1.071800e-01	ci left: 1.170722e-03	ci right 1.304198e-03	k: 1335	n:1080000
Cons ci ratio: 1.678719e-01	ci left: 4.622692e-04	ci right 5.478541e-04	k: 544	n:1080000
KS ci ratio: 8.384821e-03	ci left: 1.676078e-01	ci right 1.690199e-01	k: 181778	n:1080000
TCERG1L   1080000 perm   738 sec   (1462 perm/sec)   p_kst 1.683130e-01   p_cons 5.037037e-04   p_joint 1.236111e-03

Joint ci ratio: 1.067019e-01	ci left: 1.170696e-03	ci right 1.303536e-03	k: 1347	n:1090000
Cons ci ratio: 1.666530e-01	ci left: 4.650604e-04	ci right 5.504742e-04	k: 552	n:1090000
KS ci ratio: 8.346821e-03	ci left: 1.675926e-01	ci right 1.689982e-01	k: 183441	n:1090000
TCERG1L   1090000 perm   750 sec   (1454 perm/sec)   p_kst 1.682945e-01   p_cons 5.064220e-04   p_joint 1.235780e-03

Joint ci ratio: 1.061911e-01	ci left: 1.171557e-03	ci right 1.303819e-03	k: 1360	n:1100000
Cons ci ratio: 1.659047e-01	ci left: 4.651889e-04	ci right 5.502044e-04	k: 557	n:1100000
KS ci ratio: 8.308955e-03	ci left: 1.675904e-01	ci right 1.689896e-01	k: 185118	n:1100000
TCERG1L   1100000 perm   762 sec   (1444 perm/sec)   p_kst 1.682891e-01   p_cons 5.063636e-04   p_joint 1.236364e-03

Joint ci ratio: 1.057260e-01	ci left: 1.171527e-03	ci right 1.303170e-03	k: 1372	n:1110000
Cons ci ratio: 1.644374e-01	ci left: 4.696347e-04	ci right 5.546285e-04	k: 567	n:1110000
KS ci ratio: 8.269205e-03	ci left: 1.676692e-01	ci right 1.690623e-01	k: 186885	n:1110000
TCERG1L   1110000 perm   773 sec   (1435 perm/sec)   p_kst 1.683649e-01   p_cons 5.108108e-04   p_joint 1.236036e-03

Joint ci ratio: 1.053813e-01	ci left: 1.168891e-03	ci right 1.299782e-03	k: 1381	n:1120000
Cons ci ratio: 1.635756e-01	ci left: 4.705789e-04	ci right 5.552533e-04	k: 573	n:1120000
KS ci ratio: 8.232171e-03	ci left: 1.676735e-01	ci right 1.690604e-01	k: 188570	n:1120000
TCERG1L   1120000 perm   785 sec   (1426 perm/sec)   p_kst 1.683661e-01   p_cons 5.116071e-04   p_joint 1.233036e-03

Joint ci ratio: 9.299678e-02	ci left: 1.496888e-03	ci right 1.643739e-03	k: 1773	n:1130000
Cons ci ratio: 1.627273e-01	ci left: 4.715074e-04	ci right 5.558659e-04	k: 579	n:1130000
KS ci ratio: 8.196200e-03	ci left: 1.676583e-01	ci right 1.690390e-01	k: 190233	n:1130000
TCERG1L   1130000 perm   797 sec   (1418 perm/sec)   p_kst 1.683478e-01   p_cons 5.123894e-04   p_joint 1.569027e-03

Joint ci ratio: 9.255431e-02	ci left: 1.498324e-03	ci right 1.644578e-03	k: 1790	n:1140000
Cons ci ratio: 1.621691e-01	ci left: 4.707375e-04	ci right 5.546412e-04	k: 583	n:1140000
KS ci ratio: 8.159776e-03	ci left: 1.676749e-01	ci right 1.690496e-01	k: 191932	n:1140000
TCERG1L   1140000 perm   809 sec   (1409 perm/sec)   p_kst 1.683614e-01   p_cons 5.114035e-04   p_joint 1.570175e-03

Joint ci ratio: 9.240006e-02	ci left: 1.490391e-03	ci right 1.635616e-03	k: 1796	n:1150000
Cons ci ratio: 1.610695e-01	ci left: 4.733193e-04	ci right 5.570558e-04	k: 591	n:1150000
KS ci ratio: 8.124211e-03	ci left: 1.676782e-01	ci right 1.690469e-01	k: 193616	n:1150000
TCERG1L   1150000 perm   821 sec   (1401 perm/sec)   p_kst 1.683617e-01   p_cons 5.139130e-04   p_joint 1.561739e-03

Joint ci ratio: 9.229786e-02	ci left: 1.480911e-03	ci right 1.625044e-03	k: 1800	n:1160000
Cons ci ratio: 1.605281e-01	ci left: 4.725485e-04	ci right 5.558405e-04	k: 595	n:1160000
KS ci ratio: 8.089507e-03	ci left: 1.676678e-01	ci right 1.690305e-01	k: 195284	n:1160000
TCERG1L   1160000 perm   833 sec   (1392 perm/sec)   p_kst 1.683483e-01   p_cons 5.129310e-04   p_joint 1.551724e-03

Joint ci ratio: 9.286830e-02	ci left: 1.449885e-03	ci right 1.591917e-03	k: 1778	n:1170000
Cons ci ratio: 1.599922e-01	ci left: 4.717913e-04	ci right 5.546455e-04	k: 599	n:1170000
KS ci ratio: 8.053694e-03	ci left: 1.677112e-01	ci right 1.690682e-01	k: 197015	n:1170000
TCERG1L   1170000 perm   845 sec   (1384 perm/sec)   p_kst 1.683889e-01   p_cons 5.119658e-04   p_joint 1.519658e-03

Joint ci ratio: 9.574142e-02	ci left: 1.350709e-03	ci right 1.487350e-03	k: 1673	n:1180000
Cons ci ratio: 1.783296e-01	ci left: 3.728241e-04	ci right 4.466134e-04	k: 482	n:1180000
KS ci ratio: 8.017843e-03	ci left: 1.677717e-01	ci right 1.691231e-01	k: 198767	n:1180000
TCERG1L   1180000 perm   858 sec   (1376 perm/sec)   p_kst 1.684466e-01   p_cons 4.084746e-04   p_joint 1.417797e-03

Joint ci ratio: 9.557063e-02	ci left: 1.344280e-03	ci right 1.480014e-03	k: 1679	n:1190000
Cons ci ratio: 1.783299e-01	ci left: 3.696911e-04	ci right 4.428604e-04	k: 482	n:1190000
KS ci ratio: 7.983042e-03	ci left: 1.678111e-01	ci right 1.691569e-01	k: 200495	n:1190000
TCERG1L   1190000 perm   870 sec   (1367 perm/sec)   p_kst 1.684832e-01   p_cons 4.050420e-04   p_joint 1.410924e-03

Joint ci ratio: 9.509062e-02	ci left: 1.346907e-03	ci right 1.482185e-03	k: 1696	n:1200000
Cons ci ratio: 1.765116e-01	ci left: 3.745737e-04	ci right 4.478728e-04	k: 492	n:1200000
KS ci ratio: 7.948831e-03	ci left: 1.678448e-01	ci right 1.691851e-01	k: 202217	n:1200000
TCERG1L   1200000 perm   883 sec   (1359 perm/sec)   p_kst 1.685142e-01   p_cons 4.100000e-04   p_joint 1.413333e-03

Joint ci ratio: 9.481184e-02	ci left: 1.343843e-03	ci right 1.478396e-03	k: 1706	n:1210000
Cons ci ratio: 1.756232e-01	ci left: 3.754282e-04	ci right 4.484855e-04	k: 497	n:1210000
KS ci ratio: 7.916527e-03	ci left: 1.678260e-01	ci right 1.691607e-01	k: 203876	n:1210000
TCERG1L   1210000 perm   895 sec   (1351 perm/sec)   p_kst 1.684926e-01   p_cons 4.107438e-04   p_joint 1.409917e-03

Joint ci ratio: 9.461831e-02	ci left: 1.338430e-03	ci right 1.472152e-03	k: 1713	n:1220000
Cons ci ratio: 1.750966e-01	ci left: 3.747020e-04	ci right 4.473762e-04	k: 500	n:1220000
KS ci ratio: 7.884960e-03	ci left: 1.677953e-01	ci right 1.691243e-01	k: 205520	n:1220000
TCERG1L   1220000 perm   908 sec   (1344 perm/sec)   p_kst 1.684590e-01   p_cons 4.098361e-04   p_joint 1.404098e-03

Joint ci ratio: 9.486860e-02	ci left: 1.320404e-03	ci right 1.452693e-03	k: 1704	n:1230000
Cons ci ratio: 1.742293e-01	ci left: 3.755430e-04	ci right 4.479816e-04	k: 505	n:1230000
KS ci ratio: 7.852399e-03	ci left: 1.678137e-01	ci right 1.691374e-01	k: 207224	n:1230000
TCERG1L   1230000 perm   921 sec   (1335 perm/sec)   p_kst 1.684748e-01   p_cons 4.105691e-04   p_joint 1.385366e-03

Joint ci ratio: 9.426209e-02	ci left: 1.327078e-03	ci right 1.459139e-03	k: 1726	n:1240000
Cons ci ratio: 1.732053e-01	ci left: 3.771428e-04	ci right 4.494177e-04	k: 511	n:1240000
KS ci ratio: 7.819879e-03	ci left: 1.678448e-01	ci right 1.691632e-01	k: 208944	n:1240000
TCERG1L   1240000 perm   934 sec   (1328 perm/sec)   p_kst 1.685032e-01   p_cons 4.120968e-04   p_joint 1.391935e-03

Joint ci ratio: 1.024609e-01	ci left: 1.109661e-03	ci right 1.230269e-03	k: 1461	n:1250000
Cons ci ratio: 1.725327e-01	ci left: 3.771872e-04	ci right 4.491607e-04	k: 515	n:1250000
KS ci ratio: 7.788049e-03	ci left: 1.678650e-01	ci right 1.691782e-01	k: 210651	n:1250000
TCERG1L   1250000 perm   947 sec   (1320 perm/sec)   p_kst 1.685208e-01   p_cons 4.120000e-04   p_joint 1.168800e-03

Joint ci ratio: 8.831703e-02	ci left: 1.492151e-03	ci right 1.630791e-03	k: 1966	n:1260000
Cons ci ratio: 1.717027e-01	ci left: 3.779909e-04	ci right 4.497349e-04	k: 520	n:1260000
KS ci ratio: 7.757856e-03	ci left: 1.678397e-01	ci right 1.691476e-01	k: 212301	n:1260000
TCERG1L   1260000 perm   960 sec   (1313 perm/sec)   p_kst 1.684929e-01   p_cons 4.126984e-04   p_joint 1.560317e-03

Joint ci ratio: 7.977465e-02	ci left: 1.821920e-03	ci right 1.974067e-03	k: 2409	n:1270000
Cons ci ratio: 1.708847e-01	ci left: 3.787829e-04	ci right 4.502993e-04	k: 525	n:1270000
KS ci ratio: 7.726969e-03	ci left: 1.678525e-01	ci right 1.691553e-01	k: 213999	n:1270000
TCERG1L   1270000 perm   973 sec   (1305 perm/sec)   p_kst 1.685031e-01   p_cons 4.133858e-04   p_joint 1.896850e-03

Joint ci ratio: 8.106608e-02	ci left: 1.749503e-03	ci right 1.898079e-03	k: 2333	n:1280000
Cons ci ratio: 1.699182e-01	ci left: 3.803112e-04	ci right 4.516685e-04	k: 531	n:1280000
KS ci ratio: 7.696835e-03	ci left: 1.678511e-01	ci right 1.691488e-01	k: 215679	n:1280000
TCERG1L   1280000 perm   986 sec   (1298 perm/sec)   p_kst 1.684992e-01   p_cons 4.148438e-04   p_joint 1.822656e-03

Joint ci ratio: 8.075529e-02	ci left: 1.749612e-03	ci right 1.897601e-03	k: 2351	n:1290000
Cons ci ratio: 1.695998e-01	ci left: 3.788476e-04	ci right 4.497835e-04	k: 533	n:1290000
KS ci ratio: 7.667792e-03	ci left: 1.678227e-01	ci right 1.691152e-01	k: 217324	n:1290000
TCERG1L   1290000 perm   1000 sec   (1291 perm/sec)   p_kst 1.684682e-01   p_cons 4.131783e-04   p_joint 1.822481e-03

Joint ci ratio: 8.229494e-02	ci left: 1.670592e-03	ci right 1.814720e-03	k: 2264	n:1300000
Cons ci ratio: 1.691255e-01	ci left: 3.781432e-04	ci right 4.487290e-04	k: 536	n:1300000
KS ci ratio: 7.638804e-03	ci left: 1.678047e-01	ci right 1.690922e-01	k: 218982	n:1300000
TCERG1L   1300000 perm   1013 sec   (1283 perm/sec)   p_kst 1.684477e-01   p_cons 4.123077e-04   p_joint 1.741538e-03

Joint ci ratio: 8.200585e-02	ci left: 1.669802e-03	ci right 1.813332e-03	k: 2280	n:1310000
Cons ci ratio: 1.686551e-01	ci left: 3.774499e-04	ci right 4.476904e-04	k: 539	n:1310000
KS ci ratio: 7.608794e-03	ci left: 1.678365e-01	ci right 1.691192e-01	k: 220705	n:1310000
TCERG1L   1310000 perm   1028 sec   (1274 perm/sec)   p_kst 1.684771e-01   p_cons 4.114504e-04   p_joint 1.740458e-03

Joint ci ratio: 8.159533e-02	ci left: 1.674220e-03	ci right 1.817375e-03	k: 2303	n:1320000
Cons ci ratio: 1.680339e-01	ci left: 3.774931e-04	ci right 4.474567e-04	k: 543	n:1320000
KS ci ratio: 7.579647e-03	ci left: 1.678489e-01	ci right 1.691268e-01	k: 222403	n:1320000
TCERG1L   1320000 perm   1042 sec   (1267 perm/sec)   p_kst 1.684871e-01   p_cons 4.113636e-04   p_joint 1.744697e-03

Joint ci ratio: 8.136624e-02	ci left: 1.671207e-03	ci right 1.813684e-03	k: 2316	n:1330000
Cons ci ratio: 1.672669e-01	ci left: 3.782565e-04	ci right 4.480093e-04	k: 548	n:1330000
KS ci ratio: 7.551197e-03	ci left: 1.678477e-01	ci right 1.691207e-01	k: 224083	n:1330000
TCERG1L   1330000 perm   1055 sec   (1260 perm/sec)   p_kst 1.684835e-01   p_cons 4.120301e-04   p_joint 1.741353e-03

Joint ci ratio: 8.630147e-02	ci left: 1.470955e-03	ci right 1.604349e-03	k: 2059	n:1340000
Cons ci ratio: 1.665103e-01	ci left: 3.790092e-04	ci right 4.485530e-04	k: 553	n:1340000
KS ci ratio: 7.276841e-03	ci left: 1.773631e-01	ci right 1.786592e-01	k: 238534	n:1340000
TCERG1L   1340000 perm   1069 sec   (1253 perm/sec)   p_kst 1.780104e-01   p_cons 4.126866e-04   p_joint 1.536567e-03

Joint ci ratio: 8.651252e-02	ci left: 1.452811e-03	ci right 1.584898e-03	k: 2049	n:1350000
Cons ci ratio: 1.657639e-01	ci left: 3.797514e-04	ci right 4.490879e-04	k: 558	n:1350000
KS ci ratio: 7.249933e-03	ci left: 1.773617e-01	ci right 1.786530e-01	k: 240309	n:1350000
TCERG1L   1350000 perm   1085 sec   (1244 perm/sec)   p_kst 1.780067e-01   p_cons 4.133333e-04   p_joint 1.517778e-03

Joint ci ratio: 8.613511e-02	ci left: 1.455078e-03	ci right 1.586765e-03	k: 2067	n:1360000
Cons ci ratio: 1.650275e-01	ci left: 3.804834e-04	ci right 4.496143e-04	k: 563	n:1360000
KS ci ratio: 7.223467e-03	ci left: 1.773545e-01	ci right 1.786410e-01	k: 242076	n:1360000
TCERG1L   1360000 perm   1099 sec   (1238 perm/sec)   p_kst 1.779971e-01   p_cons 4.139706e-04   p_joint 1.519853e-03

Joint ci ratio: 8.576259e-02	ci left: 1.457313e-03	ci right 1.588604e-03	k: 2085	n:1370000
Cons ci ratio: 1.647358e-01	ci left: 3.791058e-04	ci right 4.478525e-04	k: 565	n:1370000
KS ci ratio: 7.197343e-03	ci left: 1.773452e-01	ci right 1.786269e-01	k: 243840	n:1370000
TCERG1L   1370000 perm   1113 sec   (1231 perm/sec)   p_kst 1.779854e-01   p_cons 4.124088e-04   p_joint 1.521898e-03

Joint ci ratio: 8.559883e-02	ci left: 1.452426e-03	ci right 1.583014e-03	k: 2093	n:1380000
Cons ci ratio: 1.645906e-01	ci left: 3.770534e-04	ci right 4.453617e-04	k: 566	n:1380000
KS ci ratio: 7.171677e-03	ci left: 1.773288e-01	ci right 1.786059e-01	k: 245594	n:1380000
TCERG1L   1380000 perm   1128 sec   (1224 perm/sec)   p_kst 1.779667e-01   p_cons 4.101449e-04   p_joint 1.516667e-03

Joint ci ratio: 8.525341e-02	ci left: 1.453946e-03	ci right 1.584117e-03	k: 2110	n:1390000
Cons ci ratio: 1.640131e-01	ci left: 3.771001e-04	ci right 4.451536e-04	k: 570	n:1390000
KS ci ratio: 7.145301e-03	ci left: 1.773529e-01	ci right 1.786254e-01	k: 247404	n:1390000
TCERG1L   1390000 perm   1142 sec   (1217 perm/sec)   p_kst 1.779885e-01   p_cons 4.100719e-04   p_joint 1.517986e-03

Joint ci ratio: 8.515294e-02	ci left: 1.447055e-03	ci right 1.576449e-03	k: 2115	n:1400000
Cons ci ratio: 1.632997e-01	ci left: 3.778317e-04	ci right 4.456915e-04	k: 575	n:1400000
KS ci ratio: 7.119439e-03	ci left: 1.773674e-01	ci right 1.786354e-01	k: 249201	n:1400000
TCERG1L   1400000 perm   1156 sec   (1211 perm/sec)   p_kst 1.780007e-01   p_cons 4.107143e-04   p_joint 1.510714e-03

Joint ci ratio: 8.617918e-02	ci left: 1.402090e-03	ci right 1.529050e-03	k: 2065	n:1410000
Cons ci ratio: 1.630170e-01	ci left: 3.765126e-04	ci right 4.440069e-04	k: 577	n:1410000
KS ci ratio: 7.094320e-03	ci left: 1.773626e-01	ci right 1.786260e-01	k: 250971	n:1410000
TCERG1L   1410000 perm   1170 sec   (1205 perm/sec)   p_kst 1.779936e-01   p_cons 4.092199e-04   p_joint 1.464539e-03

Joint ci ratio: 8.582672e-02	ci left: 1.403930e-03	ci right 1.530511e-03	k: 2082	n:1420000
Cons ci ratio: 1.624559e-01	ci left: 3.765633e-04	ci right 4.438116e-04	k: 581	n:1420000
KS ci ratio: 7.070469e-03	ci left: 1.773163e-01	ci right 1.785751e-01	k: 252682	n:1420000
TCERG1L   1420000 perm   1185 sec   (1198 perm/sec)   p_kst 1.779451e-01   p_cons 4.091549e-04   p_joint 1.466197e-03

Joint ci ratio: 8.568310e-02	ci left: 1.398903e-03	ci right 1.524809e-03	k: 2089	n:1430000
Cons ci ratio: 1.620388e-01	ci left: 3.759427e-04	ci right 4.428911e-04	k: 584	n:1430000
KS ci ratio: 7.045694e-03	ci left: 1.773189e-01	ci right 1.785733e-01	k: 254462	n:1430000
TCERG1L   1430000 perm   1199 sec   (1192 perm/sec)   p_kst 1.779455e-01   p_cons 4.083916e-04   p_joint 1.460839e-03

Joint ci ratio: 8.018453e-02	ci left: 1.590491e-03	ci right 1.724026e-03	k: 2385	n:1440000
Cons ci ratio: 1.610778e-01	ci left: 3.779966e-04	ci right 4.448729e-04	k: 591	n:1440000
KS ci ratio: 7.021345e-03	ci left: 1.773145e-01	ci right 1.785646e-01	k: 256232	n:1440000
TCERG1L   1440000 perm   1214 sec   (1186 perm/sec)   p_kst 1.779389e-01   p_cons 4.104167e-04   p_joint 1.656250e-03

Joint ci ratio: 7.985047e-02	ci left: 1.593040e-03	ci right 1.726205e-03	k: 2405	n:1450000
Cons ci ratio: 1.600002e-01	ci left: 3.806853e-04	ci right 4.475434e-04	k: 599	n:1450000
KS ci ratio: 6.998567e-03	ci left: 1.772551e-01	ci right 1.785007e-01	k: 257922	n:1450000
TCERG1L   1450000 perm   1229 sec   (1180 perm/sec)   p_kst 1.778772e-01   p_cons 4.131034e-04   p_joint 1.658621e-03

Joint ci ratio: 7.981771e-02	ci left: 1.583471e-03	ci right 1.715779e-03	k: 2407	n:1460000
Cons ci ratio: 1.596017e-01	ci left: 3.800505e-04	ci right 4.466150e-04	k: 602	n:1460000
KS ci ratio: 6.974048e-03	ci left: 1.772786e-01	ci right 1.785199e-01	k: 259732	n:1460000
TCERG1L   1460000 perm   1243 sec   (1174 perm/sec)   p_kst 1.778986e-01   p_cons 4.123288e-04   p_joint 1.648630e-03

Joint ci ratio: 7.957030e-02	ci left: 1.582699e-03	ci right 1.714515e-03	k: 2422	n:1470000
Cons ci ratio: 1.590750e-01	ci left: 3.800777e-04	ci right 4.464063e-04	k: 606	n:1470000
KS ci ratio: 6.949381e-03	ci left: 1.773188e-01	ci right 1.785560e-01	k: 261567	n:1470000
TCERG1L   1470000 perm   1258 sec   (1168 perm/sec)   p_kst 1.779367e-01   p_cons 4.122449e-04   p_joint 1.647619e-03

Joint ci ratio: 7.932518e-02	ci left: 1.581939e-03	ci right 1.713267e-03	k: 2437	n:1480000
Cons ci ratio: 1.589443e-01	ci left: 3.781584e-04	ci right 4.440926e-04	k: 607	n:1480000
KS ci ratio: 6.926013e-03	ci left: 1.773145e-01	ci right 1.785475e-01	k: 263337	n:1480000
TCERG1L   1480000 perm   1273 sec   (1162 perm/sec)   p_kst 1.779304e-01   p_cons 4.101351e-04   p_joint 1.646622e-03

Joint ci ratio: 7.927678e-02	ci left: 1.573295e-03	ci right 1.703822e-03	k: 2440	n:1490000
Cons ci ratio: 1.586836e-01	ci left: 3.769093e-04	ci right 4.425077e-04	k: 609	n:1490000
KS ci ratio: 6.902231e-03	ci left: 1.773378e-01	ci right 1.785668e-01	k: 265148	n:1490000
TCERG1L   1490000 perm   1288 sec   (1157 perm/sec)   p_kst 1.779517e-01   p_cons 4.087248e-04   p_joint 1.637584e-03

Joint ci ratio: 7.898605e-02	ci left: 1.574569e-03	ci right 1.704700e-03	k: 2458	n:1500000
Cons ci ratio: 1.579088e-01	ci left: 3.782382e-04	ci right 4.437159e-04	k: 615	n:1500000
KS ci ratio: 6.877673e-03	ci left: 1.774041e-01	ci right 1.786291e-01	k: 267024	n:1500000
TCERG1L   1500000 perm   1303 sec   (1151 perm/sec)   p_kst 1.780160e-01   p_cons 4.100000e-04   p_joint 1.638667e-03

Joint ci ratio: 7.882610e-02	ci left: 1.570633e-03	ci right 1.700164e-03	k: 2468	n:1510000
Cons ci ratio: 1.575258e-01	ci left: 3.776416e-04	ci right 4.428425e-04	k: 618	n:1510000
KS ci ratio: 6.854942e-03	ci left: 1.774027e-01	ci right 1.786237e-01	k: 268799	n:1510000
TCERG1L   1510000 perm   1318 sec   (1145 perm/sec)   p_kst 1.780126e-01   p_cons 4.092715e-04   p_joint 1.634437e-03

Joint ci ratio: 7.970436e-02	ci left: 1.525477e-03	ci right 1.652750e-03	k: 2414	n:1520000
Cons ci ratio: 1.568933e-01	ci left: 3.783172e-04	ci right 4.433479e-04	k: 623	n:1520000
KS ci ratio: 6.833648e-03	ci left: 1.773495e-01	ci right 1.785662e-01	k: 270495	n:1520000
TCERG1L   1520000 perm   1334 sec   (1140 perm/sec)   p_kst 1.779572e-01   p_cons 4.098684e-04   p_joint 1.588158e-03

Joint ci ratio: 7.934362e-02	ci left: 1.529600e-03	ci right 1.656613e-03	k: 2436	n:1530000
Cons ci ratio: 1.557737e-01	ci left: 3.814968e-04	ci right 4.465624e-04	k: 632	n:1530000
KS ci ratio: 6.811988e-03	ci left: 1.773211e-01	ci right 1.785337e-01	k: 272228	n:1530000
TCERG1L   1530000 perm   1349 sec   (1134 perm/sec)   p_kst 1.779268e-01   p_cons 4.130719e-04   p_joint 1.592157e-03

Joint ci ratio: 7.913291e-02	ci left: 1.527941e-03	ci right 1.654464e-03	k: 2449	n:1540000
Cons ci ratio: 1.554060e-01	ci left: 3.808918e-04	ci right 4.456865e-04	k: 635	n:1540000
KS ci ratio: 6.789176e-03	ci left: 1.773514e-01	ci right 1.785602e-01	k: 274051	n:1540000
TCERG1L   1540000 perm   1364 sec   (1129 perm/sec)   p_kst 1.779552e-01   p_cons 4.123377e-04   p_joint 1.590260e-03

Joint ci ratio: 7.885976e-02	ci left: 1.528835e-03	ci right 1.654975e-03	k: 2466	n:1550000
Cons ci ratio: 1.547986e-01	ci left: 3.815350e-04	ci right 4.461620e-04	k: 640	n:1550000
KS ci ratio: 6.767502e-03	ci left: 1.773420e-01	ci right 1.785469e-01	k: 275813	n:1550000
TCERG1L   1550000 perm   1380 sec   (1123 perm/sec)   p_kst 1.779439e-01   p_cons 4.129032e-04   p_joint 1.590968e-03

Joint ci ratio: 7.957409e-02	ci left: 1.491387e-03	ci right 1.615603e-03	k: 2422	n:1560000
Cons ci ratio: 1.543179e-01	ci left: 3.815542e-04	ci right 4.459652e-04	k: 644	n:1560000
KS ci ratio: 6.745901e-03	ci left: 1.773386e-01	ci right 1.785395e-01	k: 277584	n:1560000
TCERG1L   1560000 perm   1395 sec   (1118 perm/sec)   p_kst 1.779385e-01   p_cons 4.128205e-04   p_joint 1.552564e-03

Joint ci ratio: 7.942688e-02	ci left: 1.487506e-03	ci right 1.611159e-03	k: 2431	n:1570000
Cons ci ratio: 1.536050e-01	ci left: 3.827984e-04	ci right 4.470934e-04	k: 650	n:1570000
KS ci ratio: 6.724462e-03	ci left: 1.773371e-01	ci right 1.785342e-01	k: 279358	n:1570000
TCERG1L   1570000 perm   1410 sec   (1113 perm/sec)   p_kst 1.779350e-01   p_cons 4.140127e-04   p_joint 1.548408e-03

Joint ci ratio: 7.924798e-02	ci left: 1.484915e-03	ci right 1.608062e-03	k: 2442	n:1580000
Cons ci ratio: 1.531353e-01	ci left: 3.828101e-04	ci right 4.468924e-04	k: 654	n:1580000
KS ci ratio: 6.702907e-03	ci left: 1.773495e-01	ci right 1.785428e-01	k: 281154	n:1580000
TCERG1L   1580000 perm   1426 sec   (1108 perm/sec)   p_kst 1.779456e-01   p_cons 4.139241e-04   p_joint 1.545570e-03

Joint ci ratio: 7.895757e-02	ci left: 1.486673e-03	ci right 1.609493e-03	k: 2460	n:1590000
Cons ci ratio: 1.525541e-01	ci left: 3.834269e-04	ci right 4.473466e-04	k: 659	n:1590000
KS ci ratio: 6.680754e-03	ci left: 1.773969e-01	ci right 1.785866e-01	k: 283006	n:1590000
TCERG1L   1590000 perm   1442 sec   (1102 perm/sec)   p_kst 1.779912e-01   p_cons 4.144654e-04   p_joint 1.547170e-03

Joint ci ratio: 7.862270e-02	ci left: 1.490248e-03	ci right 1.612818e-03	k: 2481	n:1600000
Cons ci ratio: 1.522086e-01	ci left: 3.828340e-04	ci right 4.464971e-04	k: 662	n:1600000
KS ci ratio: 6.660824e-03	ci left: 1.773558e-01	ci right 1.785417e-01	k: 284717	n:1600000
TCERG1L   1600000 perm   1459 sec   (1097 perm/sec)   p_kst 1.779481e-01   p_cons 4.137500e-04   p_joint 1.550625e-03

Joint ci ratio: 7.846492e-02	ci left: 1.487081e-03	ci right 1.609133e-03	k: 2491	n:1610000
Cons ci ratio: 1.518654e-01	ci left: 3.822486e-04	ci right 4.456580e-04	k: 665	n:1610000
KS ci ratio: 6.639873e-03	ci left: 1.773679e-01	ci right 1.785501e-01	k: 286513	n:1610000
TCERG1L   1610000 perm   1475 sec   (1091 perm/sec)   p_kst 1.779584e-01   p_cons 4.130435e-04   p_joint 1.547205e-03

Joint ci ratio: 7.933084e-02	ci left: 1.445224e-03	ci right 1.565211e-03	k: 2437	n:1620000
Cons ci ratio: 1.514114e-01	ci left: 3.822645e-04	ci right 4.454698e-04	k: 669	n:1620000
KS ci ratio: 6.620125e-03	ci left: 1.773354e-01	ci right 1.785139e-01	k: 288237	n:1620000
TCERG1L   1620000 perm   1491 sec   (1086 perm/sec)   p_kst 1.779241e-01   p_cons 4.129630e-04   p_joint 1.504321e-03

Joint ci ratio: 7.913639e-02	ci left: 1.443574e-03	ci right 1.563116e-03	k: 2449	n:1630000
Cons ci ratio: 1.511861e-01	ci left: 3.810998e-04	ci right 4.440103e-04	k: 671	n:1630000
KS ci ratio: 6.601327e-03	ci left: 1.772691e-01	ci right 1.784437e-01	k: 289905	n:1630000
TCERG1L   1630000 perm   1508 sec   (1081 perm/sec)   p_kst 1.778558e-01   p_cons 4.116564e-04   p_joint 1.502454e-03

Joint ci ratio: 7.886321e-02	ci left: 1.444933e-03	ci right 1.564156e-03	k: 2466	n:1640000
Cons ci ratio: 1.508498e-01	ci left: 3.805362e-04	ci right 4.432013e-04	k: 674	n:1640000
KS ci ratio: 6.580574e-03	ci left: 1.772973e-01	ci right 1.784685e-01	k: 291727	n:1640000
TCERG1L   1640000 perm   1524 sec   (1076 perm/sec)   p_kst 1.778823e-01   p_cons 4.109756e-04   p_joint 1.503659e-03

Joint ci ratio: 7.868808e-02	ci left: 1.442711e-03	ci right 1.561474e-03	k: 2477	n:1650000
Cons ci ratio: 1.504048e-01	ci left: 3.805628e-04	ci right 4.430307e-04	k: 678	n:1650000
KS ci ratio: 6.561049e-03	ci left: 1.772792e-01	ci right 1.784468e-01	k: 293473	n:1650000
TCERG1L   1650000 perm   1540 sec   (1071 perm/sec)   p_kst 1.778624e-01   p_cons 4.109091e-04   p_joint 1.501212e-03

Joint ci ratio: 7.912130e-02	ci left: 1.418075e-03	ci right 1.535482e-03	k: 2450	n:1660000
Cons ci ratio: 1.498540e-01	ci left: 3.811692e-04	ci right 4.434870e-04	k: 683	n:1660000
KS ci ratio: 6.541858e-03	ci left: 1.772541e-01	ci right 1.784181e-01	k: 295207	n:1660000
TCERG1L   1660000 perm   1557 sec   (1066 perm/sec)   p_kst 1.778355e-01   p_cons 4.114458e-04   p_joint 1.475904e-03

Joint ci ratio: 7.881630e-02	ci left: 1.420736e-03	ci right 1.537890e-03	k: 2469	n:1670000
Cons ci ratio: 1.495265e-01	ci left: 3.806158e-04	ci right 4.426950e-04	k: 686	n:1670000
KS ci ratio: 6.522554e-03	ci left: 1.772419e-01	ci right 1.784023e-01	k: 296962	n:1670000
TCERG1L   1670000 perm   1573 sec   (1061 perm/sec)   p_kst 1.778216e-01   p_cons 4.107784e-04   p_joint 1.478443e-03

Joint ci ratio: 7.865735e-02	ci left: 1.418115e-03	ci right 1.534805e-03	k: 2479	n:1680000
Cons ci ratio: 1.487704e-01	ci left: 3.823614e-04	ci right 4.443820e-04	k: 693	n:1680000
KS ci ratio: 6.503487e-03	ci left: 1.772269e-01	ci right 1.783838e-01	k: 298712	n:1680000
TCERG1L   1680000 perm   1590 sec   (1056 perm/sec)   p_kst 1.778048e-01   p_cons 4.125000e-04   p_joint 1.475595e-03

Joint ci ratio: 7.283077e-02	ci left: 1.648907e-03	ci right 1.774113e-03	k: 2891	n:1690000
Cons ci ratio: 1.482373e-01	ci left: 3.829476e-04	ci right 4.448209e-04	k: 698	n:1690000
KS ci ratio: 6.483798e-03	ci left: 1.772474e-01	ci right 1.784010e-01	k: 300522	n:1690000
TCERG1L   1690000 perm   1607 sec   (1052 perm/sec)   p_kst 1.778237e-01   p_cons 4.130178e-04   p_joint 1.710651e-03

Joint ci ratio: 7.286900e-02	ci left: 1.637474e-03	ci right 1.761880e-03	k: 2888	n:1700000
Cons ci ratio: 1.480258e-01	ci left: 3.818278e-04	ci right 4.434244e-04	k: 700	n:1700000
KS ci ratio: 6.464053e-03	ci left: 1.772784e-01	ci right 1.784286e-01	k: 302350	n:1700000
TCERG1L   1700000 perm   1624 sec   (1047 perm/sec)   p_kst 1.778529e-01   p_cons 4.117647e-04   p_joint 1.698824e-03

Joint ci ratio: 7.340580e-02	ci left: 1.603785e-03	ci right 1.726567e-03	k: 2846	n:1710000
Cons ci ratio: 1.475006e-01	ci left: 3.824108e-04	ci right 4.438632e-04	k: 705	n:1710000
KS ci ratio: 6.445608e-03	ci left: 1.772581e-01	ci right 1.784049e-01	k: 304091	n:1710000
TCERG1L   1710000 perm   1641 sec   (1042 perm/sec)   p_kst 1.778310e-01   p_cons 4.122807e-04   p_joint 1.664327e-03

Joint ci ratio: 7.320041e-02	ci left: 1.603593e-03	ci right 1.726002e-03	k: 2862	n:1720000
Cons ci ratio: 1.471883e-01	ci left: 3.818674e-04	ci right 4.430911e-04	k: 708	n:1720000
KS ci ratio: 6.427065e-03	ci left: 1.772498e-01	ci right 1.783932e-01	k: 305852	n:1720000
TCERG1L   1720000 perm   1658 sec   (1038 perm/sec)   p_kst 1.778209e-01   p_cons 4.116279e-04   p_joint 1.663953e-03

Joint ci ratio: 7.312405e-02	ci left: 1.597728e-03	ci right 1.719557e-03	k: 2868	n:1730000
Cons ci ratio: 1.469812e-01	ci left: 3.807735e-04	ci right 4.417285e-04	k: 710	n:1730000
KS ci ratio: 6.408529e-03	ci left: 1.772484e-01	ci right 1.783885e-01	k: 307625	n:1730000
TCERG1L   1730000 perm   1675 sec   (1033 perm/sec)   p_kst 1.778179e-01   p_cons 4.104046e-04   p_joint 1.657803e-03

Joint ci ratio: 7.387618e-02	ci left: 1.555824e-03	ci right 1.675730e-03	k: 2810	n:1740000
Cons ci ratio: 1.463649e-01	ci left: 3.819069e-04	ci right 4.427645e-04	k: 716	n:1740000
KS ci ratio: 6.389888e-03	ci left: 1.772591e-01	ci right 1.783960e-01	k: 309419	n:1740000
TCERG1L   1740000 perm   1692 sec   (1028 perm/sec)   p_kst 1.778270e-01   p_cons 4.114943e-04   p_joint 1.614943e-03

Joint ci ratio: 7.364074e-02	ci left: 1.557029e-03	ci right 1.676630e-03	k: 2828	n:1750000
Cons ci ratio: 1.460597e-01	ci left: 3.813762e-04	ci right 4.420114e-04	k: 719	n:1750000
KS ci ratio: 6.371360e-03	ci left: 1.772720e-01	ci right 1.784056e-01	k: 311217	n:1750000
TCERG1L   1750000 perm   1710 sec   (1024 perm/sec)   p_kst 1.778383e-01   p_cons 4.108571e-04   p_joint 1.616000e-03

Joint ci ratio: 7.361502e-02	ci left: 1.549298e-03	ci right 1.668261e-03	k: 2830	n:1760000
Cons ci ratio: 1.456556e-01	ci left: 3.813990e-04	ci right 4.418556e-04	k: 723	n:1760000
KS ci ratio: 6.353041e-03	ci left: 1.772825e-01	ci right 1.784129e-01	k: 313011	n:1760000
TCERG1L   1760000 perm   1727 sec   (1019 perm/sec)   p_kst 1.778472e-01   p_cons 4.107955e-04   p_joint 1.607955e-03

Joint ci ratio: 7.613494e-02	ci left: 1.438532e-03	ci right 1.552939e-03	k: 2646	n:1770000
Cons ci ratio: 1.454550e-01	ci left: 3.803330e-04	ci right 4.405303e-04	k: 725	n:1770000
KS ci ratio: 6.334659e-03	ci left: 1.773030e-01	ci right 1.784303e-01	k: 314823	n:1770000
TCERG1L   1770000 perm   1744 sec   (1015 perm/sec)   p_kst 1.778661e-01   p_cons 4.096045e-04   p_joint 1.494915e-03

Joint ci ratio: 7.590585e-02	ci left: 1.439269e-03	ci right 1.553374e-03	k: 2662	n:1780000
Cons ci ratio: 1.451554e-01	ci left: 3.798204e-04	ci right 4.398021e-04	k: 728	n:1780000
KS ci ratio: 6.316581e-03	ci left: 1.773166e-01	ci right 1.784407e-01	k: 316623	n:1780000
TCERG1L   1780000 perm   1762 sec   (1010 perm/sec)   p_kst 1.778781e-01   p_cons 4.089888e-04   p_joint 1.495506e-03

Joint ci ratio: 7.566468e-02	ci left: 1.440545e-03	ci right 1.554373e-03	k: 2679	n:1790000
Cons ci ratio: 1.446601e-01	ci left: 3.803906e-04	ci right 4.402395e-04	k: 733	n:1790000
KS ci ratio: 6.298416e-03	ci left: 1.773411e-01	ci right 1.784622e-01	k: 318443	n:1790000
TCERG1L   1790000 perm   1779 sec   (1006 perm/sec)   p_kst 1.779011e-01   p_cons 4.094972e-04   p_joint 1.496648e-03

Joint ci ratio: 7.546784e-02	ci left: 1.440173e-03	ci right 1.553663e-03	k: 2693	n:1800000
Cons ci ratio: 1.439751e-01	ci left: 3.820258e-04	ci right 4.418230e-04	k: 740	n:1800000
KS ci ratio: 6.281755e-03	ci left: 1.773027e-01	ci right 1.784205e-01	k: 320150	n:1800000
TCERG1L   1800000 perm   1798 sec   (1001 perm/sec)   p_kst 1.778611e-01   p_cons 4.111111e-04   p_joint 1.496111e-03

Joint ci ratio: 7.521691e-02	ci left: 1.441974e-03	ci right 1.555211e-03	k: 2711	n:1810000
Cons ci ratio: 1.435881e-01	ci left: 3.820456e-04	ci right 4.416713e-04	k: 744	n:1810000
KS ci ratio: 6.263924e-03	ci left: 1.773254e-01	ci right 1.784402e-01	k: 321967	n:1810000
TCERG1L   1810000 perm   1816 sec   (997 perm/sec)   p_kst 1.778823e-01   p_cons 4.110497e-04   p_joint 1.497790e-03

Joint ci ratio: 7.494098e-02	ci left: 1.444834e-03	ci right 1.557861e-03	k: 2731	n:1820000
Cons ci ratio: 1.430133e-01	ci left: 3.831250e-04	ci right 4.426594e-04	k: 750	n:1820000
KS ci ratio: 6.246678e-03	ci left: 1.773276e-01	ci right 1.784393e-01	k: 323747	n:1820000
TCERG1L   1820000 perm   1834 sec   (992 perm/sec)   p_kst 1.778830e-01   p_cons 4.120879e-04   p_joint 1.500549e-03

Joint ci ratio: 7.476336e-02	ci left: 1.443909e-03	ci right 1.556585e-03	k: 2744	n:1830000
Cons ci ratio: 1.427285e-01	ci left: 3.826121e-04	ci right 4.419384e-04	k: 753	n:1830000
KS ci ratio: 6.229865e-03	ci left: 1.773161e-01	ci right 1.784248e-01	k: 325502	n:1830000
TCERG1L   1830000 perm   1852 sec   (988 perm/sec)   p_kst 1.778699e-01   p_cons 4.114754e-04   p_joint 1.499454e-03

Joint ci ratio: 7.447889e-02	ci left: 1.447262e-03	ci right 1.559751e-03	k: 2765	n:1840000
Cons ci ratio: 1.420705e-01	ci left: 3.842015e-04	ci right 4.434763e-04	k: 760	n:1840000
KS ci ratio: 6.213106e-03	ci left: 1.773086e-01	ci right 1.784142e-01	k: 327264	n:1840000
TCERG1L   1840000 perm   1869 sec   (984 perm/sec)   p_kst 1.778609e-01   p_cons 4.130435e-04   p_joint 1.502717e-03

Joint ci ratio: 7.423767e-02	ci left: 1.448988e-03	ci right 1.561230e-03	k: 2783	n:1850000
Cons ci ratio: 1.415136e-01	ci left: 3.852530e-04	ci right 4.444374e-04	k: 766	n:1850000
KS ci ratio: 6.196962e-03	ci left: 1.772784e-01	ci right 1.783810e-01	k: 328984	n:1850000
TCERG1L   1850000 perm   1887 sec   (980 perm/sec)   p_kst 1.778292e-01   p_cons 4.140541e-04   p_joint 1.504324e-03

Joint ci ratio: 7.406498e-02	ci left: 1.448057e-03	ci right 1.559956e-03	k: 2796	n:1860000
Cons ci ratio: 1.411461e-01	ci left: 3.852562e-04	ci right 4.442744e-04	k: 770	n:1860000
KS ci ratio: 6.180614e-03	ci left: 1.772642e-01	ci right 1.783637e-01	k: 330733	n:1860000
TCERG1L   1860000 perm   1906 sec   (976 perm/sec)   p_kst 1.778134e-01   p_cons 4.139785e-04   p_joint 1.503226e-03

Joint ci ratio: 7.391985e-02	ci left: 1.446087e-03	ci right 1.557605e-03	k: 2807	n:1870000
Cons ci ratio: 1.409634e-01	ci left: 3.842278e-04	ci right 4.430059e-04	k: 772	n:1870000
KS ci ratio: 6.163944e-03	ci left: 1.772715e-01	ci right 1.783680e-01	k: 332522	n:1870000
TCERG1L   1870000 perm   1924 sec   (972 perm/sec)   p_kst 1.778193e-01   p_cons 4.128342e-04   p_joint 1.501070e-03

Joint ci ratio: 7.503912e-02	ci left: 1.395067e-03	ci right 1.504350e-03	k: 2724	n:1880000
Cons ci ratio: 1.403294e-01	ci left: 3.857764e-04	ci right 4.445038e-04	k: 779	n:1880000
KS ci ratio: 6.147765e-03	ci left: 1.772617e-01	ci right 1.783553e-01	k: 334279	n:1880000
TCERG1L   1880000 perm   1942 sec   (968 perm/sec)   p_kst 1.778080e-01   p_cons 4.143617e-04   p_joint 1.448936e-03

Joint ci ratio: 7.487449e-02	ci left: 1.393916e-03	ci right 1.502859e-03	k: 2736	n:1890000
Cons ci ratio: 1.398817e-01	ci left: 3.862881e-04	ci right 4.448901e-04	k: 784	n:1890000
KS ci ratio: 6.131925e-03	ci left: 1.772419e-01	ci right 1.783326e-01	k: 336017	n:1890000
TCERG1L   1890000 perm   1960 sec   (964 perm/sec)   p_kst 1.777868e-01   p_cons 4.148148e-04   p_joint 1.447619e-03

Joint ci ratio: 7.467014e-02	ci left: 1.394327e-03	ci right 1.502991e-03	k: 2751	n:1900000
Cons ci ratio: 1.395267e-01	ci left: 3.862866e-04	ci right 4.447274e-04	k: 788	n:1900000
KS ci ratio: 6.116316e-03	ci left: 1.772171e-01	ci right 1.783049e-01	k: 337745	n:1900000
TCERG1L   1900000 perm   1979 sec   (960 perm/sec)   p_kst 1.777605e-01   p_cons 4.147368e-04   p_joint 1.447895e-03

Joint ci ratio: 7.448094e-02	ci left: 1.394220e-03	ci right 1.502589e-03	k: 2765	n:1910000
Cons ci ratio: 1.390866e-01	ci left: 3.867908e-04	ci right 4.451079e-04	k: 793	n:1910000
KS ci ratio: 6.099952e-03	ci left: 1.772345e-01	ci right 1.783194e-01	k: 339553	n:1910000
TCERG1L   1910000 perm   1998 sec   (956 perm/sec)   p_kst 1.777764e-01   p_cons 4.151832e-04   p_joint 1.447644e-03

Joint ci ratio: 7.419968e-02	ci left: 1.397692e-03	ci right 1.505904e-03	k: 2786	n:1920000
Cons ci ratio: 1.383911e-01	ci left: 3.887983e-04	ci right 4.471008e-04	k: 801	n:1920000
KS ci ratio: 6.084444e-03	ci left: 1.772167e-01	ci right 1.782988e-01	k: 341294	n:1920000
TCERG1L   1920000 perm   2016 sec   (952 perm/sec)   p_kst 1.777573e-01   p_cons 4.171875e-04   p_joint 1.451042e-03

Joint ci ratio: 6.953343e-02	ci left: 1.586865e-03	ci right 1.701685e-03	k: 3172	n:1930000
Cons ci ratio: 1.377058e-01	ci left: 3.907858e-04	ci right 4.490723e-04	k: 809	n:1930000
KS ci ratio: 6.068732e-03	ci left: 1.772147e-01	ci right 1.782940e-01	k: 343065	n:1930000
TCERG1L   1930000 perm   2035 sec   (949 perm/sec)   p_kst 1.777539e-01   p_cons 4.191710e-04   p_joint 1.643523e-03

Joint ci ratio: 7.003291e-02	ci left: 1.555894e-03	ci right 1.669314e-03	k: 3127	n:1940000
Cons ci ratio: 1.374516e-01	ci left: 3.902646e-04	ci right 4.483571e-04	k: 812	n:1940000
KS ci ratio: 6.053162e-03	ci left: 1.772117e-01	ci right 1.782882e-01	k: 344834	n:1940000
TCERG1L   1940000 perm   2054 sec   (945 perm/sec)   p_kst 1.777495e-01   p_cons 4.185567e-04   p_joint 1.611856e-03

Joint ci ratio: 6.985449e-02	ci left: 1.555976e-03	ci right 1.669102e-03	k: 3143	n:1950000
Cons ci ratio: 1.368635e-01	ci left: 3.917298e-04	ci right 4.497707e-04	k: 819	n:1950000
KS ci ratio: 6.037880e-03	ci left: 1.772006e-01	ci right 1.782742e-01	k: 346587	n:1950000
TCERG1L   1950000 perm   2073 sec   (941 perm/sec)   p_kst 1.777369e-01   p_cons 4.200000e-04   p_joint 1.611795e-03

Joint ci ratio: 6.966638e-02	ci left: 1.556560e-03	ci right 1.669411e-03	k: 3160	n:1960000
Cons ci ratio: 1.365309e-01	ci left: 3.917022e-04	ci right 4.495865e-04	k: 823	n:1960000
KS ci ratio: 6.022220e-03	ci left: 1.772135e-01	ci right 1.782844e-01	k: 348387	n:1960000
TCERG1L   1960000 perm   2091 sec   (937 perm/sec)   p_kst 1.777485e-01   p_cons 4.198980e-04   p_joint 1.612245e-03

Joint ci ratio: 6.984393e-02	ci left: 1.540678e-03	ci right 1.652674e-03	k: 3144	n:1970000
Cons ci ratio: 1.362831e-01	ci left: 3.911847e-04	ci right 4.488791e-04	k: 826	n:1970000
KS ci ratio: 6.007516e-03	ci left: 1.771857e-01	ci right 1.782538e-01	k: 350107	n:1970000
TCERG1L   1970000 perm   2110 sec   (934 perm/sec)   p_kst 1.777193e-01   p_cons 4.192893e-04   p_joint 1.595939e-03

Joint ci ratio: 6.962284e-02	ci left: 1.542822e-03	ci right 1.654604e-03	k: 3164	n:1980000
Cons ci ratio: 1.357913e-01	ci left: 3.921362e-04	ci right 4.497454e-04	k: 832	n:1980000
KS ci ratio: 5.992680e-03	ci left: 1.771698e-01	ci right 1.782352e-01	k: 351850	n:1980000
TCERG1L   1980000 perm   2129 sec   (930 perm/sec)   p_kst 1.777020e-01   p_cons 4.202020e-04   p_joint 1.597980e-03

Joint ci ratio: 6.938201e-02	ci left: 1.545932e-03	ci right 1.657536e-03	k: 3186	n:1990000
Cons ci ratio: 1.355475e-01	ci left: 3.916221e-04	ci right 4.490441e-04	k: 835	n:1990000
KS ci ratio: 5.977707e-03	ci left: 1.771661e-01	ci right 1.782288e-01	k: 353617	n:1990000
TCERG1L   1990000 perm   2148 sec   (926 perm/sec)   p_kst 1.776970e-01   p_cons 4.195980e-04   p_joint 1.601005e-03

Joint ci ratio: 6.920850e-02	ci left: 1.546064e-03	ci right 1.657387e-03	k: 3202	n:2000000
Cons ci ratio: 1.351440e-01	ci left: 3.920793e-04	ci right 4.493834e-04	k: 840	n:2000000
KS ci ratio: 5.962958e-03	ci left: 1.771570e-01	ci right 1.782170e-01	k: 355373	n:2000000
TCERG1L   2000000 perm   2168 sec   (923 perm/sec)   p_kst 1.776865e-01   p_cons 4.200000e-04   p_joint 1.601000e-03

Joint ci ratio: 6.899337e-02	ci left: 1.548150e-03	ci right 1.659264e-03	k: 3222	n:2010000
Cons ci ratio: 1.349836e-01	ci left: 3.910900e-04	ci right 4.481763e-04	k: 842	n:2010000
KS ci ratio: 5.948834e-03	ci left: 1.771226e-01	ci right 1.781799e-01	k: 357078	n:2010000
TCERG1L   2010000 perm   2187 sec   (919 perm/sec)   p_kst 1.776507e-01   p_cons 4.189055e-04   p_joint 1.602985e-03

Joint ci ratio: 6.885470e-02	ci left: 1.546811e-03	ci right 1.657596e-03	k: 3235	n:2020000
Cons ci ratio: 1.345851e-01	ci left: 3.915458e-04	ci right 4.485163e-04	k: 847	n:2020000
KS ci ratio: 5.934036e-03	ci left: 1.771266e-01	ci right 1.781813e-01	k: 358860	n:2020000
TCERG1L   2020000 perm   2207 sec   (915 perm/sec)   p_kst 1.776535e-01   p_cons 4.193069e-04   p_joint 1.601485e-03

Joint ci ratio: 6.976786e-02	ci left: 1.498528e-03	ci right 1.607336e-03	k: 3151	n:2030000
Cons ci ratio: 1.344267e-01	ci left: 3.905690e-04	ci right 4.473252e-04	k: 849	n:2030000
KS ci ratio: 5.919757e-03	ci left: 1.771104e-01	ci right 1.781624e-01	k: 360601	n:2030000
TCERG1L   2030000 perm   2226 sec   (912 perm/sec)   p_kst 1.776360e-01   p_cons 4.182266e-04   p_joint 1.552217e-03

Joint ci ratio: 6.962448e-02	ci left: 1.497443e-03	ci right 1.605940e-03	k: 3164	n:2040000
Cons ci ratio: 1.342689e-01	ci left: 3.896019e-04	ci right 4.461458e-04	k: 851	n:2040000
KS ci ratio: 5.904669e-03	ci left: 1.771394e-01	ci right 1.781889e-01	k: 362434	n:2040000
TCERG1L   2040000 perm   2247 sec   (908 perm/sec)   p_kst 1.776637e-01   p_cons 4.171569e-04   p_joint 1.550980e-03

Joint ci ratio: 6.942729e-02	ci left: 1.498767e-03	ci right 1.607040e-03	k: 3182	n:2050000
Cons ci ratio: 1.337206e-01	ci left: 3.910016e-04	ci right 4.474985e-04	k: 858	n:2050000
KS ci ratio: 5.890698e-03	ci left: 1.771185e-01	ci right 1.781654e-01	k: 364165	n:2050000
TCERG1L   2050000 perm   2266 sec   (905 perm/sec)   p_kst 1.776415e-01   p_cons 4.185366e-04   p_joint 1.552195e-03

Joint ci ratio: 6.916688e-02	ci left: 1.502940e-03	ci right 1.611091e-03	k: 3206	n:2060000
Cons ci ratio: 1.332560e-01	ci left: 3.919189e-04	ci right 4.483360e-04	k: 864	n:2060000
KS ci ratio: 5.876094e-03	ci left: 1.771341e-01	ci right 1.781785e-01	k: 365971	n:2060000
TCERG1L   2060000 perm   2287 sec   (901 perm/sec)   p_kst 1.776558e-01   p_cons 4.194175e-04   p_joint 1.556311e-03

Joint ci ratio: 6.914555e-02	ci left: 1.496629e-03	ci right 1.604291e-03	k: 3208	n:2070000
Cons ci ratio: 1.328725e-01	ci left: 3.923606e-04	ci right 4.486659e-04	k: 869	n:2070000
KS ci ratio: 5.861744e-03	ci left: 1.771423e-01	ci right 1.781842e-01	k: 367762	n:2070000
TCERG1L   2070000 perm   2307 sec   (897 perm/sec)   p_kst 1.776628e-01   p_cons 4.198068e-04   p_joint 1.549758e-03

Joint ci ratio: 6.897380e-02	ci left: 1.496993e-03	ci right 1.604403e-03	k: 3224	n:2080000
Cons ci ratio: 1.323411e-01	ci left: 3.937280e-04	ci right 4.499858e-04	k: 876	n:2080000
KS ci ratio: 5.847710e-03	ci left: 1.771399e-01	ci right 1.781793e-01	k: 369531	n:2080000
TCERG1L   2080000 perm   2327 sec   (894 perm/sec)   p_kst 1.776591e-01   p_cons 4.211538e-04   p_joint 1.550000e-03

Joint ci ratio: 6.880333e-02	ci left: 1.497354e-03	ci right 1.604514e-03	k: 3240	n:2090000
Cons ci ratio: 1.319654e-01	ci left: 3.941574e-04	ci right 4.503042e-04	k: 881	n:2090000
KS ci ratio: 5.833948e-03	ci left: 1.771289e-01	ci right 1.781658e-01	k: 371282	n:2090000
TCERG1L   2090000 perm   2347 sec   (891 perm/sec)   p_kst 1.776469e-01   p_cons 4.215311e-04   p_joint 1.550239e-03

Joint ci ratio: 6.875049e-02	ci left: 1.492563e-03	ci right 1.599295e-03	k: 3245	n:2100000
Cons ci ratio: 1.314447e-01	ci left: 3.955040e-04	ci right 4.516029e-04	k: 888	n:2100000
KS ci ratio: 5.819960e-03	ci left: 1.771342e-01	ci right 1.781686e-01	k: 373067	n:2100000
TCERG1L   2100000 perm   2367 sec   (887 perm/sec)   p_kst 1.776510e-01   p_cons 4.228571e-04   p_joint 1.545238e-03

Joint ci ratio: 6.858166e-02	ci left: 1.492942e-03	ci right 1.599429e-03	k: 3261	n:2110000
Cons ci ratio: 1.312972e-01	ci left: 3.945463e-04	ci right 4.504417e-04	k: 890	n:2110000
KS ci ratio: 5.805968e-03	ci left: 1.771447e-01	ci right 1.781766e-01	k: 374863	n:2110000
TCERG1L   2110000 perm   2387 sec   (884 perm/sec)   p_kst 1.776602e-01   p_cons 4.218009e-04   p_joint 1.545498e-03

Joint ci ratio: 6.847687e-02	ci left: 1.490536e-03	ci right 1.596682e-03	k: 3271	n:2120000
Cons ci ratio: 1.310767e-01	ci left: 3.940539e-04	ci right 4.497784e-04	k: 893	n:2120000
KS ci ratio: 5.792480e-03	ci left: 1.771348e-01	ci right 1.781642e-01	k: 376616	n:2120000
TCERG1L   2120000 perm   2408 sec   (881 perm/sec)   p_kst 1.776491e-01   p_cons 4.212264e-04   p_joint 1.542925e-03

Joint ci ratio: 6.834128e-02	ci left: 1.489537e-03	ci right 1.595393e-03	k: 3284	n:2130000
Cons ci ratio: 1.310036e-01	ci left: 3.926579e-04	ci right 4.481517e-04	k: 894	n:2130000
KS ci ratio: 5.779261e-03	ci left: 1.771160e-01	ci right 1.781431e-01	k: 378350	n:2130000
TCERG1L   2130000 perm   2428 sec   (877 perm/sec)   p_kst 1.776291e-01   p_cons 4.197183e-04   p_joint 1.541784e-03

Joint ci ratio: 6.857188e-02	ci left: 1.472472e-03	ci right 1.577483e-03	k: 3262	n:2140000
Cons ci ratio: 1.308575e-01	ci left: 3.917270e-04	ci right 4.470227e-04	k: 896	n:2140000
KS ci ratio: 5.766022e-03	ci left: 1.771031e-01	ci right 1.781277e-01	k: 380096	n:2140000
TCERG1L   2140000 perm   2449 sec   (874 perm/sec)   p_kst 1.776150e-01   p_cons 4.186916e-04   p_joint 1.524299e-03

Joint ci ratio: 6.846713e-02	ci left: 1.470195e-03	ci right 1.574876e-03	k: 3272	n:2150000
Cons ci ratio: 1.307120e-01	ci left: 3.908048e-04	ci right 4.459042e-04	k: 898	n:2150000
KS ci ratio: 5.752726e-03	ci left: 1.770977e-01	ci right 1.781199e-01	k: 381858	n:2150000
TCERG1L   2150000 perm   2470 sec   (870 perm/sec)   p_kst 1.776084e-01   p_cons 4.176744e-04   p_joint 1.521860e-03

Joint ci ratio: 6.836286e-02	ci left: 1.467939e-03	ci right 1.572294e-03	k: 3282	n:2160000
Cons ci ratio: 1.302779e-01	ci left: 3.916826e-04	ci right 4.467082e-04	k: 904	n:2160000
KS ci ratio: 5.739241e-03	ci left: 1.771067e-01	ci right 1.781265e-01	k: 383651	n:2160000
TCERG1L   2160000 perm   2491 sec   (867 perm/sec)   p_kst 1.776162e-01   p_cons 4.185185e-04   p_joint 1.519444e-03

Joint ci ratio: 6.814517e-02	ci left: 1.470686e-03	ci right 1.574891e-03	k: 3303	n:2170000
Cons ci ratio: 1.298481e-01	ci left: 3.925527e-04	ci right 4.475045e-04	k: 910	n:2170000
KS ci ratio: 5.726138e-03	ci left: 1.771009e-01	ci right 1.781184e-01	k: 385412	n:2170000
TCERG1L   2170000 perm   2512 sec   (864 perm/sec)   p_kst 1.776092e-01   p_cons 4.193548e-04   p_joint 1.522120e-03

Joint ci ratio: 6.793978e-02	ci left: 1.472958e-03	ci right 1.576997e-03	k: 3323	n:2180000
Cons ci ratio: 1.293520e-01	ci left: 3.938589e-04	ci right 4.487668e-04	k: 917	n:2180000
KS ci ratio: 5.712076e-03	ci left: 1.771488e-01	ci right 1.781640e-01	k: 387290	n:2180000
TCERG1L   2180000 perm   2533 sec   (861 perm/sec)   p_kst 1.776560e-01   p_cons 4.206422e-04   p_joint 1.524312e-03

Joint ci ratio: 6.775652e-02	ci left: 1.474312e-03	ci right 1.578155e-03	k: 3341	n:2190000
Cons ci ratio: 1.290711e-01	ci left: 3.938279e-04	ci right 4.486031e-04	k: 921	n:2190000
KS ci ratio: 5.698357e-03	ci left: 1.771839e-01	ci right 1.781969e-01	k: 389141	n:2190000
TCERG1L   2190000 perm   2554 sec   (858 perm/sec)   p_kst 1.776900e-01   p_cons 4.205479e-04   p_joint 1.525571e-03

Joint ci ratio: 6.801201e-02	ci left: 1.456440e-03	ci right 1.559425e-03	k: 3316	n:2200000
Cons ci ratio: 1.286531e-01	ci left: 3.946772e-04	ci right 4.493792e-04	k: 927	n:2200000
KS ci ratio: 5.685541e-03	ci left: 1.771774e-01	ci right 1.781880e-01	k: 390901	n:2200000
TCERG1L   2200000 perm   2576 sec   (854 perm/sec)   p_kst 1.776823e-01   p_cons 4.213636e-04   p_joint 1.507273e-03

Joint ci ratio: 6.784855e-02	ci left: 1.456966e-03	ci right 1.559732e-03	k: 3332	n:2210000
Cons ci ratio: 1.285148e-01	ci left: 3.937671e-04	ci right 4.482799e-04	k: 929	n:2210000
KS ci ratio: 5.672565e-03	ci left: 1.771836e-01	ci right 1.781919e-01	k: 392689	n:2210000
TCERG1L   2210000 perm   2597 sec   (851 perm/sec)   p_kst 1.776873e-01   p_cons 4.203620e-04   p_joint 1.507692e-03

Joint ci ratio: 6.770652e-02	ci left: 1.456603e-03	ci right 1.559119e-03	k: 3346	n:2220000
Cons ci ratio: 1.282393e-01	ci left: 3.937373e-04	ci right 4.481202e-04	k: 933	n:2220000
KS ci ratio: 5.659747e-03	ci left: 1.771861e-01	ci right 1.781922e-01	k: 394469	n:2220000
TCERG1L   2220000 perm   2619 sec   (848 perm/sec)   p_kst 1.776887e-01   p_cons 4.202703e-04   p_joint 1.507207e-03

Joint ci ratio: 6.753519e-02	ci left: 1.457565e-03	ci right 1.559880e-03	k: 3363	n:2230000
Cons ci ratio: 1.279656e-01	ci left: 3.937080e-04	ci right 4.479619e-04	k: 937	n:2230000
KS ci ratio: 5.646461e-03	ci left: 1.772173e-01	ci right 1.782212e-01	k: 396313	n:2230000
TCERG1L   2230000 perm   2640 sec   (845 perm/sec)   p_kst 1.777188e-01   p_cons 4.201794e-04   p_joint 1.508072e-03

Joint ci ratio: 6.746516e-02	ci left: 1.454130e-03	ci right 1.556094e-03	k: 3370	n:2240000
Cons ci ratio: 1.278294e-01	ci left: 3.928146e-04	ci right 4.468835e-04	k: 939	n:2240000
KS ci ratio: 5.633346e-03	ci left: 1.772442e-01	ci right 1.782459e-01	k: 398148	n:2240000
TCERG1L   2240000 perm   2662 sec   (842 perm/sec)   p_kst 1.777446e-01   p_cons 4.191964e-04   p_joint 1.504464e-03

Joint ci ratio: 6.734545e-02	ci left: 1.452911e-03	ci right 1.554601e-03	k: 3382	n:2250000
Cons ci ratio: 1.274234e-01	ci left: 3.936503e-04	ci right 4.476491e-04	k: 945	n:2250000
KS ci ratio: 5.620399e-03	ci left: 1.772669e-01	ci right 1.782664e-01	k: 399974	n:2250000
TCERG1L   2250000 perm   2683 sec   (839 perm/sec)   p_kst 1.777662e-01   p_cons 4.200000e-04   p_joint 1.503111e-03

Joint ci ratio: 6.716695e-02	ci left: 1.454313e-03	ci right 1.555821e-03	k: 3400	n:2260000
Cons ci ratio: 1.270879e-01	ci left: 3.940505e-04	ci right 4.479511e-04	k: 950	n:2260000
KS ci ratio: 5.607718e-03	ci left: 1.772801e-01	ci right 1.782774e-01	k: 401779	n:2260000
TCERG1L   2260000 perm   2705 sec   (836 perm/sec)   p_kst 1.777783e-01   p_cons 4.203540e-04   p_joint 1.504425e-03

Joint ci ratio: 6.698006e-02	ci left: 1.456136e-03	ci right 1.557477e-03	k: 3419	n:2270000
Cons ci ratio: 1.268880e-01	ci left: 3.935941e-04	ci right 4.473413e-04	k: 953	n:2270000
KS ci ratio: 5.595419e-03	ci left: 1.772777e-01	ci right 1.782729e-01	k: 403549	n:2270000
TCERG1L   2270000 perm   2726 sec   (833 perm/sec)   p_kst 1.777749e-01   p_cons 4.198238e-04   p_joint 1.506167e-03

Joint ci ratio: 6.705887e-02	ci left: 1.446299e-03	ci right 1.547079e-03	k: 3411	n:2280000
Cons ci ratio: 1.268216e-01	ci left: 3.922925e-04	ci right 4.458318e-04	k: 954	n:2280000
KS ci ratio: 5.582998e-03	ci left: 1.772859e-01	ci right 1.782789e-01	k: 405343	n:2280000
TCERG1L   2280000 perm   2748 sec   (830 perm/sec)   p_kst 1.777820e-01   p_cons 4.184211e-04   p_joint 1.496053e-03

Joint ci ratio: 6.692173e-02	ci left: 1.445995e-03	ci right 1.546539e-03	k: 3425	n:2290000
Cons ci ratio: 1.264250e-01	ci left: 3.931166e-04	ci right 4.465880e-04	k: 960	n:2290000
KS ci ratio: 5.571160e-03	ci left: 1.772679e-01	ci right 1.782587e-01	k: 407077	n:2290000
TCERG1L   2290000 perm   2770 sec   (827 perm/sec)   p_kst 1.777629e-01   p_cons 4.192140e-04   p_joint 1.495633e-03

Joint ci ratio: 6.677571e-02	ci left: 1.446120e-03	ci right 1.546446e-03	k: 3440	n:2300000
Cons ci ratio: 1.261628e-01	ci left: 3.930915e-04	ci right 4.464403e-04	k: 964	n:2300000
KS ci ratio: 5.559231e-03	ci left: 1.772587e-01	ci right 1.782473e-01	k: 408831	n:2300000
TCERG1L   2300000 perm   2792 sec   (824 perm/sec)   p_kst 1.777526e-01   p_cons 4.191304e-04   p_joint 1.495652e-03

Joint ci ratio: 6.659206e-02	ci left: 1.447948e-03	ci right 1.548113e-03	k: 3459	n:2310000
Cons ci ratio: 1.257723e-01	ci left: 3.939054e-04	ci right 4.471869e-04	k: 970	n:2310000
KS ci ratio: 5.547173e-03	ci left: 1.772604e-01	ci right 1.782469e-01	k: 410610	n:2310000
TCERG1L   2310000 perm   2814 sec   (821 perm/sec)   p_kst 1.777532e-01   p_cons 4.199134e-04   p_joint 1.497403e-03

Joint ci ratio: 6.641947e-02	ci left: 1.449337e-03	ci right 1.549328e-03	k: 3477	n:2320000
Cons ci ratio: 1.254497e-01	ci left: 3.942950e-04	ci right 4.474822e-04	k: 975	n:2320000
KS ci ratio: 5.535552e-03	ci left: 1.772432e-01	ci right 1.782275e-01	k: 412345	n:2320000
TCERG1L   2320000 perm   2836 sec   (818 perm/sec)   p_kst 1.777349e-01   p_cons 4.202586e-04   p_joint 1.498707e-03

Joint ci ratio: 6.712895e-02	ci left: 1.412308e-03	ci right 1.510826e-03	k: 3404	n:2330000
Cons ci ratio: 1.251934e-01	ci left: 3.942657e-04	ci right 4.473322e-04	k: 979	n:2330000
KS ci ratio: 5.523777e-03	ci left: 1.772381e-01	ci right 1.782202e-01	k: 414108	n:2330000
TCERG1L   2330000 perm   2858 sec   (815 perm/sec)   p_kst 1.777288e-01   p_cons 4.201717e-04   p_joint 1.460944e-03

Joint ci ratio: 6.693259e-02	ci left: 1.414676e-03	ci right 1.513060e-03	k: 3424	n:2340000
Cons ci ratio: 1.247486e-01	ci left: 3.954787e-04	ci right 4.485054e-04	k: 986	n:2340000
KS ci ratio: 5.512125e-03	ci left: 1.772305e-01	ci right 1.782105e-01	k: 415865	n:2340000
TCERG1L   2340000 perm   2881 sec   (812 perm/sec)   p_kst 1.777201e-01   p_cons 4.213675e-04   p_joint 1.463248e-03

Joint ci ratio: 6.690346e-02	ci left: 1.409912e-03	ci right 1.507919e-03	k: 3427	n:2350000
Cons ci ratio: 1.245595e-01	ci left: 3.950326e-04	ci right 4.479133e-04	k: 989	n:2350000
KS ci ratio: 5.500610e-03	ci left: 1.772195e-01	ci right 1.781974e-01	k: 417614	n:2350000
TCERG1L   2350000 perm   2904 sec   (809 perm/sec)   p_kst 1.777081e-01   p_cons 4.208511e-04   p_joint 1.458298e-03

Joint ci ratio: 6.393683e-02	ci left: 1.539401e-03	ci right 1.641489e-03	k: 3752	n:2360000
Cons ci ratio: 1.241214e-01	ci left: 3.962326e-04	ci right 4.490736e-04	k: 996	n:2360000
KS ci ratio: 5.489167e-03	ci left: 1.772087e-01	ci right 1.781845e-01	k: 419363	n:2360000
TCERG1L   2360000 perm   2926 sec   (807 perm/sec)   p_kst 1.776962e-01   p_cons 4.220339e-04   p_joint 1.589831e-03

Joint ci ratio: 6.380097e-02	ci left: 1.539549e-03	ci right 1.641422e-03	k: 3768	n:2370000
Cons ci ratio: 1.238113e-01	ci left: 3.966050e-04	ci right 4.493539e-04	k: 1001	n:2370000
KS ci ratio: 5.477606e-03	ci left: 1.772080e-01	ci right 1.781818e-01	k: 421136	n:2370000
TCERG1L   2370000 perm   2949 sec   (804 perm/sec)   p_kst 1.776945e-01   p_cons 4.223629e-04   p_joint 1.589873e-03

Joint ci ratio: 6.271877e-02	ci left: 1.587253e-03	ci right 1.690437e-03	k: 3899	n:2380000
Cons ci ratio: 1.235035e-01	ci left: 3.969745e-04	ci right 4.496316e-04	k: 1006	n:2380000
KS ci ratio: 5.466479e-03	ci left: 1.771881e-01	ci right 1.781597e-01	k: 422863	n:2380000
TCERG1L   2380000 perm   2972 sec   (801 perm/sec)   p_kst 1.776735e-01   p_cons 4.226891e-04   p_joint 1.638235e-03

Joint ci ratio: 6.261455e-02	ci left: 1.585966e-03	ci right 1.688888e-03	k: 3912	n:2390000
Cons ci ratio: 1.234423e-01	ci left: 3.957190e-04	ci right 4.481817e-04	k: 1007	n:2390000
KS ci ratio: 5.454990e-03	ci left: 1.771913e-01	ci right 1.781609e-01	k: 424645	n:2390000
TCERG1L   2390000 perm   2994 sec   (798 perm/sec)   p_kst 1.776757e-01   p_cons 4.213389e-04   p_joint 1.636820e-03

Joint ci ratio: 6.251084e-02	ci left: 1.584689e-03	ci right 1.687353e-03	k: 3925	n:2400000
Cons ci ratio: 1.233201e-01	ci left: 3.948778e-04	ci right 4.471733e-04	k: 1009	n:2400000
KS ci ratio: 5.443185e-03	ci left: 1.772153e-01	ci right 1.781830e-01	k: 426477	n:2400000
TCERG1L   2400000 perm   3016 sec   (796 perm/sec)   p_kst 1.776987e-01   p_cons 4.204167e-04   p_joint 1.635417e-03

Joint ci ratio: 6.236801e-02	ci left: 1.585466e-03	ci right 1.687937e-03	k: 3943	n:2410000
Cons ci ratio: 1.230160e-01	ci left: 3.952500e-04	ci right 4.474564e-04	k: 1014	n:2410000
KS ci ratio: 5.432127e-03	ci left: 1.772031e-01	ci right 1.781687e-01	k: 428222	n:2410000
TCERG1L   2410000 perm   3040 sec   (793 perm/sec)   p_kst 1.776855e-01   p_cons 4.207469e-04   p_joint 1.636100e-03

Joint ci ratio: 6.222615e-02	ci left: 1.586237e-03	ci right 1.688515e-03	k: 3961	n:2420000
Cons ci ratio: 1.228950e-01	ci left: 3.944178e-04	ci right 4.464593e-04	k: 1016	n:2420000
KS ci ratio: 5.420714e-03	ci left: 1.772136e-01	ci right 1.781772e-01	k: 430022	n:2420000
TCERG1L   2420000 perm   3062 sec   (790 perm/sec)   p_kst 1.776950e-01   p_cons 4.198347e-04   p_joint 1.636777e-03

Joint ci ratio: 6.206964e-02	ci left: 1.587812e-03	ci right 1.689925e-03	k: 3981	n:2430000
Cons ci ratio: 1.225340e-01	ci left: 3.951880e-04	ci right 4.471669e-04	k: 1022	n:2430000
KS ci ratio: 5.409701e-03	ci left: 1.772064e-01	ci right 1.781680e-01	k: 431779	n:2430000
TCERG1L   2430000 perm   3085 sec   (788 perm/sec)   p_kst 1.776868e-01   p_cons 4.205761e-04   p_joint 1.638272e-03

Joint ci ratio: 6.193756e-02	ci left: 1.588163e-03	ci right 1.690074e-03	k: 3998	n:2440000
Cons ci ratio: 1.222357e-01	ci left: 3.955549e-04	ci right 4.474461e-04	k: 1027	n:2440000
KS ci ratio: 5.398740e-03	ci left: 1.772001e-01	ci right 1.781597e-01	k: 433538	n:2440000
TCERG1L   2440000 perm   3109 sec   (785 perm/sec)   p_kst 1.776795e-01   p_cons 4.209016e-04   p_joint 1.638525e-03

Joint ci ratio: 6.182174e-02	ci left: 1.587709e-03	ci right 1.689393e-03	k: 4013	n:2450000
Cons ci ratio: 1.221763e-01	ci left: 3.943360e-04	ci right 4.460404e-04	k: 1028	n:2450000
KS ci ratio: 5.387837e-03	ci left: 1.771942e-01	ci right 1.781519e-01	k: 435298	n:2450000
TCERG1L   2450000 perm   3132 sec   (782 perm/sec)   p_kst 1.776727e-01   p_cons 4.195918e-04   p_joint 1.637959e-03

Joint ci ratio: 6.206246e-02	ci left: 1.568848e-03	ci right 1.669730e-03	k: 3982	n:2460000
Cons ci ratio: 1.220578e-01	ci left: 3.935212e-04	ci right 4.450651e-04	k: 1030	n:2460000
KS ci ratio: 5.376880e-03	ci left: 1.771949e-01	ci right 1.781506e-01	k: 437074	n:2460000
TCERG1L   2460000 perm   3155 sec   (780 perm/sec)   p_kst 1.776724e-01   p_cons 4.186992e-04   p_joint 1.618699e-03

Joint ci ratio: 6.197700e-02	ci left: 1.566881e-03	ci right 1.667492e-03	k: 3993	n:2470000
Cons ci ratio: 1.218807e-01	ci left: 3.931055e-04	ci right 4.445148e-04	k: 1033	n:2470000
KS ci ratio: 5.366005e-03	ci left: 1.771947e-01	ci right 1.781485e-01	k: 438848	n:2470000
TCERG1L   2470000 perm   3178 sec   (777 perm/sec)   p_kst 1.776713e-01   p_cons 4.182186e-04   p_joint 1.616599e-03

Joint ci ratio: 6.186869e-02	ci left: 1.566120e-03	ci right 1.666501e-03	k: 4007	n:2480000
Cons ci ratio: 1.216456e-01	ci left: 3.930842e-04	ci right 4.443844e-04	k: 1037	n:2480000
KS ci ratio: 5.355055e-03	ci left: 1.772023e-01	ci right 1.781541e-01	k: 440641	n:2480000
TCERG1L   2480000 perm   3202 sec   (775 perm/sec)   p_kst 1.776778e-01   p_cons 4.181452e-04   p_joint 1.615726e-03

Joint ci ratio: 6.168418e-02	ci left: 1.569320e-03	ci right 1.669595e-03	k: 4031	n:2490000
Cons ci ratio: 1.214119e-01	ci left: 3.930631e-04	ci right 4.442550e-04	k: 1041	n:2490000
KS ci ratio: 5.344363e-03	ci left: 1.771993e-01	ci right 1.781492e-01	k: 442408	n:2490000
TCERG1L   2490000 perm   3225 sec   (772 perm/sec)   p_kst 1.776739e-01   p_cons 4.180723e-04   p_joint 1.618876e-03

Joint ci ratio: 6.158502e-02	ci left: 1.568163e-03	ci right 1.668197e-03	k: 4044	n:2500000
Cons ci ratio: 1.212956e-01	ci left: 3.922666e-04	ci right 4.433023e-04	k: 1043	n:2500000
KS ci ratio: 5.333750e-03	ci left: 1.771956e-01	ci right 1.781436e-01	k: 444173	n:2500000
TCERG1L   2500000 perm   3249 sec   (770 perm/sec)   p_kst 1.776692e-01   p_cons 4.172000e-04   p_joint 1.617600e-03

Joint ci ratio: 6.142572e-02	ci left: 1.570153e-03	ci right 1.670046e-03	k: 4065	n:2510000
Cons ci ratio: 1.208334e-01	ci left: 3.937945e-04	ci right 4.448198e-04	k: 1051	n:2510000
KS ci ratio: 5.323155e-03	ci left: 1.771942e-01	ci right 1.781404e-01	k: 445944	n:2510000
TCERG1L   2510000 perm   3272 sec   (767 perm/sec)   p_kst 1.776669e-01   p_cons 4.187251e-04   p_joint 1.619522e-03

Joint ci ratio: 6.153211e-02	ci left: 1.558452e-03	ci right 1.657778e-03	k: 4051	n:2520000
Cons ci ratio: 1.206044e-01	ci left: 3.937712e-04	ci right 4.446899e-04	k: 1055	n:2520000
KS ci ratio: 5.312855e-03	ci left: 1.771802e-01	ci right 1.781245e-01	k: 447683	n:2520000
TCERG1L   2520000 perm   3296 sec   (765 perm/sec)   p_kst 1.776520e-01   p_cons 4.186508e-04   p_joint 1.607540e-03

Joint ci ratio: 6.137322e-02	ci left: 1.560465e-03	ci right 1.659654e-03	k: 4072	n:2530000
Cons ci ratio: 1.202065e-01	ci left: 3.948983e-04	ci right 4.457823e-04	k: 1062	n:2530000
KS ci ratio: 5.302872e-03	ci left: 1.771521e-01	ci right 1.780944e-01	k: 449386	n:2530000
TCERG1L   2530000 perm   3320 sec   (762 perm/sec)   p_kst 1.776229e-01   p_cons 4.197628e-04   p_joint 1.609486e-03

Joint ci ratio: 6.122304e-02	ci left: 1.562075e-03	ci right 1.661114e-03	k: 4092	n:2540000
Cons ci ratio: 1.197008e-01	ci left: 3.967806e-04	ci right 4.476768e-04	k: 1071	n:2540000
KS ci ratio: 5.292653e-03	ci left: 1.771404e-01	ci right 1.780808e-01	k: 451130	n:2540000
TCERG1L   2540000 perm   3345 sec   (759 perm/sec)   p_kst 1.776102e-01   p_cons 4.216535e-04   p_joint 1.611024e-03

Joint ci ratio: 6.112608e-02	ci left: 1.560969e-03	ci right 1.659776e-03	k: 4105	n:2550000
Cons ci ratio: 1.196450e-01	ci left: 3.956050e-04	ci right 4.463251e-04	k: 1072	n:2550000
KS ci ratio: 5.281975e-03	ci left: 1.771573e-01	ci right 1.780959e-01	k: 452947	n:2550000
TCERG1L   2550000 perm   3368 sec   (757 perm/sec)   p_kst 1.776263e-01   p_cons 4.203922e-04   p_joint 1.609804e-03

Joint ci ratio: 6.105186e-02	ci left: 1.558718e-03	ci right 1.657259e-03	k: 4115	n:2560000
Cons ci ratio: 1.195338e-01	ci left: 3.948175e-04	ci right 4.453863e-04	k: 1074	n:2560000
KS ci ratio: 5.271763e-03	ci left: 1.771519e-01	ci right 1.780887e-01	k: 454707	n:2560000
TCERG1L   2560000 perm   3393 sec   (755 perm/sec)   p_kst 1.776199e-01   p_cons 4.195312e-04   p_joint 1.607422e-03

Joint ci ratio: 6.091140e-02	ci left: 1.559933e-03	ci right 1.658316e-03	k: 4134	n:2570000
Cons ci ratio: 1.191464e-01	ci left: 3.959237e-04	ci right 4.464582e-04	k: 1081	n:2570000
KS ci ratio: 5.261772e-03	ci left: 1.771376e-01	ci right 1.780725e-01	k: 456444	n:2570000
TCERG1L   2570000 perm   3417 sec   (752 perm/sec)   p_kst 1.776047e-01   p_cons 4.206226e-04   p_joint 1.608560e-03

Joint ci ratio: 6.075725e-02	ci left: 1.561903e-03	ci right 1.660152e-03	k: 4155	n:2580000
Cons ci ratio: 1.189816e-01	ci left: 3.955173e-04	ci right 4.459252e-04	k: 1084	n:2580000
KS ci ratio: 5.251544e-03	ci left: 1.771396e-01	ci right 1.780727e-01	k: 458223	n:2580000
TCERG1L   2580000 perm   3442 sec   (750 perm/sec)   p_kst 1.776058e-01   p_cons 4.201550e-04   p_joint 1.610465e-03

Joint ci ratio: 6.065520e-02	ci left: 1.561196e-03	ci right 1.659229e-03	k: 4169	n:2590000
Cons ci ratio: 1.189269e-01	ci left: 3.943648e-04	ci right 4.446011e-04	k: 1085	n:2590000
KS ci ratio: 5.241487e-03	ci left: 1.771355e-01	ci right 1.780668e-01	k: 459986	n:2590000
TCERG1L   2590000 perm   3466 sec   (747 perm/sec)   p_kst 1.776008e-01   p_cons 4.189189e-04   p_joint 1.609653e-03

Joint ci ratio: 6.053193e-02	ci left: 1.561630e-03	ci right 1.659485e-03	k: 4186	n:2600000
Cons ci ratio: 1.186540e-01	ci left: 3.947139e-04	ci right 4.448712e-04	k: 1090	n:2600000
KS ci ratio: 5.231735e-03	ci left: 1.771176e-01	ci right 1.780470e-01	k: 461713	n:2600000
TCERG1L   2600000 perm   3490 sec   (745 perm/sec)   p_kst 1.775819e-01   p_cons 4.192308e-04   p_joint 1.610000e-03

Joint ci ratio: 6.044542e-02	ci left: 1.560175e-03	ci right 1.657794e-03	k: 4198	n:2610000
Cons ci ratio: 1.186541e-01	ci left: 3.932016e-04	ci right 4.431668e-04	k: 1090	n:2610000
KS ci ratio: 5.221140e-03	ci left: 1.771499e-01	ci right 1.780776e-01	k: 463571	n:2610000
TCERG1L   2610000 perm   3515 sec   (743 perm/sec)   p_kst 1.776134e-01   p_cons 4.176245e-04   p_joint 1.608429e-03

Joint ci ratio: 6.033059e-02	ci left: 1.560235e-03	ci right 1.657666e-03	k: 4214	n:2620000
Cons ci ratio: 1.185999e-01	ci left: 3.920712e-04	ci right 4.418683e-04	k: 1091	n:2620000
KS ci ratio: 5.210977e-03	ci left: 1.771614e-01	ci right 1.780874e-01	k: 465375	n:2620000
TCERG1L   2620000 perm   3539 sec   (740 perm/sec)   p_kst 1.776240e-01   p_cons 4.164122e-04   p_joint 1.608397e-03

Joint ci ratio: 6.023067e-02	ci left: 1.559546e-03	ci right 1.656766e-03	k: 4228	n:2630000
Cons ci ratio: 1.184373e-01	ci left: 3.916873e-04	ci right 4.413627e-04	k: 1094	n:2630000
KS ci ratio: 5.200703e-03	ci left: 1.771823e-01	ci right 1.781066e-01	k: 467204	n:2630000
TCERG1L   2630000 perm   3564 sec   (738 perm/sec)   p_kst 1.776441e-01   p_cons 4.159696e-04   p_joint 1.607605e-03

Joint ci ratio: 6.010996e-02	ci left: 1.559981e-03	ci right 1.657027e-03	k: 4245	n:2640000
Cons ci ratio: 1.183293e-01	ci left: 3.909387e-04	ci right 4.404709e-04	k: 1096	n:2640000
KS ci ratio: 5.190854e-03	ci left: 1.771827e-01	ci right 1.781052e-01	k: 468979	n:2640000
TCERG1L   2640000 perm   3589 sec   (736 perm/sec)   p_kst 1.776436e-01   p_cons 4.151515e-04   p_joint 1.607955e-03

Joint ci ratio: 6.001113e-02	ci left: 1.559298e-03	ci right 1.656136e-03	k: 4259	n:2650000
Cons ci ratio: 1.181142e-01	ci left: 3.909283e-04	ci right 4.403628e-04	k: 1100	n:2650000
KS ci ratio: 5.180793e-03	ci left: 1.771981e-01	ci right 1.781189e-01	k: 470794	n:2650000
TCERG1L   2650000 perm   3614 sec   (733 perm/sec)   p_kst 1.776581e-01   p_cons 4.150943e-04   p_joint 1.607170e-03

Joint ci ratio: 6.007491e-02	ci left: 1.550103e-03	ci right 1.646476e-03	k: 4250	n:2660000
Cons ci ratio: 1.179536e-01	ci left: 3.905531e-04	ci right 4.398684e-04	k: 1103	n:2660000
KS ci ratio: 5.170523e-03	ci left: 1.772284e-01	ci right 1.781475e-01	k: 472649	n:2660000
TCERG1L   2660000 perm   3639 sec   (731 perm/sec)   p_kst 1.776876e-01   p_cons 4.146617e-04   p_joint 1.597744e-03

Joint ci ratio: 5.999034e-02	ci left: 1.548724e-03	ci right 1.644871e-03	k: 4262	n:2670000
Cons ci ratio: 1.177937e-01	ci left: 3.901809e-04	ci right 4.393777e-04	k: 1106	n:2670000
KS ci ratio: 5.160818e-03	ci left: 1.772301e-01	ci right 1.781474e-01	k: 474428	n:2670000
TCERG1L   2670000 perm   3664 sec   (729 perm/sec)   p_kst 1.776884e-01   p_cons 4.142322e-04   p_joint 1.596255e-03

Joint ci ratio: 5.992719e-02	ci left: 1.546253e-03	ci right 1.642143e-03	k: 4271	n:2680000
Cons ci ratio: 1.175815e-01	ci left: 3.901736e-04	ci right 4.392746e-04	k: 1110	n:2680000
KS ci ratio: 5.151015e-03	ci left: 1.772403e-01	ci right 1.781560e-01	k: 476230	n:2680000
TCERG1L   2680000 perm   3689 sec   (726 perm/sec)   p_kst 1.776978e-01   p_cons 4.141791e-04   p_joint 1.593657e-03

Joint ci ratio: 6.056980e-02	ci left: 1.507551e-03	ci right 1.602078e-03	k: 4181	n:2690000
Cons ci ratio: 1.172127e-01	ci left: 3.912489e-04	ci right 4.403202e-04	k: 1117	n:2690000
KS ci ratio: 5.141196e-03	ci left: 1.772545e-01	ci right 1.781685e-01	k: 478043	n:2690000
TCERG1L   2690000 perm   3715 sec   (724 perm/sec)   p_kst 1.777112e-01   p_cons 4.152416e-04   p_joint 1.554275e-03

Joint ci ratio: 6.088428e-02	ci left: 1.486283e-03	ci right 1.579977e-03	k: 4138	n:2700000
Cons ci ratio: 1.167955e-01	ci left: 3.926761e-04	ci right 4.417390e-04	k: 1125	n:2700000
KS ci ratio: 5.132149e-03	ci left: 1.772279e-01	ci right 1.781402e-01	k: 479746	n:2700000
TCERG1L   2700000 perm   3740 sec   (722 perm/sec)   p_kst 1.776837e-01   p_cons 4.166667e-04   p_joint 1.532593e-03

Joint ci ratio: 6.075229e-02	ci left: 1.487339e-03	ci right 1.580890e-03	k: 4156	n:2710000
Cons ci ratio: 1.164341e-01	ci left: 3.937348e-04	ci right 4.427673e-04	k: 1132	n:2710000
KS ci ratio: 5.122405e-03	ci left: 1.772439e-01	ci right 1.781545e-01	k: 481564	n:2710000
TCERG1L   2710000 perm   3766 sec   (720 perm/sec)   p_kst 1.776989e-01   p_cons 4.177122e-04   p_joint 1.533579e-03

Joint ci ratio: 6.061388e-02	ci left: 1.488750e-03	ci right 1.582169e-03	k: 4175	n:2720000
Cons ci ratio: 1.162291e-01	ci left: 3.937151e-04	ci right 4.426529e-04	k: 1136	n:2720000
KS ci ratio: 5.113057e-03	ci left: 1.772404e-01	ci right 1.781493e-01	k: 483329	n:2720000
TCERG1L   2720000 perm   3791 sec   (717 perm/sec)   p_kst 1.776945e-01   p_cons 4.176471e-04   p_joint 1.534926e-03

Joint ci ratio: 6.050532e-02	ci left: 1.488708e-03	ci right 1.581951e-03	k: 4190	n:2730000
Cons ci ratio: 1.160761e-01	ci left: 3.933399e-04	ci right 4.421622e-04	k: 1139	n:2730000
KS ci ratio: 5.103428e-03	ci left: 1.772559e-01	ci right 1.781631e-01	k: 485146	n:2730000
TCERG1L   2730000 perm   3817 sec   (715 perm/sec)   p_kst 1.777092e-01   p_cons 4.172161e-04   p_joint 1.534799e-03

Joint ci ratio: 6.039733e-02	ci left: 1.488667e-03	ci right 1.581735e-03	k: 4205	n:2740000
Cons ci ratio: 1.159237e-01	ci left: 3.929674e-04	ci right 4.416752e-04	k: 1142	n:2740000
KS ci ratio: 5.093643e-03	ci left: 1.772833e-01	ci right 1.781889e-01	k: 486996	n:2740000
TCERG1L   2740000 perm   3843 sec   (713 perm/sec)   p_kst 1.777358e-01   p_cons 4.167883e-04   p_joint 1.534672e-03

Joint ci ratio: 6.100333e-02	ci left: 1.453529e-03	ci right 1.545344e-03	k: 4122	n:2750000
Cons ci ratio: 1.158731e-01	ci left: 3.918916e-04	ci right 4.404433e-04	k: 1143	n:2750000
KS ci ratio: 5.083990e-03	ci left: 1.773061e-01	ci right 1.782102e-01	k: 488834	n:2750000
TCERG1L   2750000 perm   3869 sec   (711 perm/sec)   p_kst 1.777578e-01   p_cons 4.156364e-04   p_joint 1.498909e-03

Joint ci ratio: 6.092216e-02	ci left: 1.452187e-03	ci right 1.543791e-03	k: 4133	n:2760000
Cons ci ratio: 1.158226e-01	ci left: 3.908235e-04	ci right 4.392203e-04	k: 1144	n:2760000
KS ci ratio: 5.075209e-03	ci left: 1.772818e-01	ci right 1.781841e-01	k: 490542	n:2760000
TCERG1L   2760000 perm   3895 sec   (709 perm/sec)   p_kst 1.777326e-01   p_cons 4.144928e-04   p_joint 1.497464e-03

Joint ci ratio: 5.697290e-02	ci left: 1.657521e-03	ci right 1.755077e-03	k: 4725	n:2770000
Cons ci ratio: 1.155705e-01	ci left: 3.911654e-04	ci right 4.394919e-04	k: 1149	n:2770000
KS ci ratio: 5.066129e-03	ci left: 1.772774e-01	ci right 1.781781e-01	k: 492305	n:2770000
TCERG1L   2770000 perm   3921 sec   (706 perm/sec)   p_kst 1.777274e-01   p_cons 4.148014e-04   p_joint 1.705776e-03

Joint ci ratio: 5.688272e-02	ci left: 1.656878e-03	ci right 1.754237e-03	k: 4740	n:2780000
Cons ci ratio: 1.155203e-01	ci left: 3.901076e-04	ci right 4.382811e-04	k: 1150	n:2780000
KS ci ratio: 5.057123e-03	ci left: 1.772716e-01	ci right 1.781707e-01	k: 494064	n:2780000
TCERG1L   2780000 perm   3947 sec   (704 perm/sec)   p_kst 1.777209e-01   p_cons 4.136691e-04   p_joint 1.705036e-03

Joint ci ratio: 5.678101e-02	ci left: 1.656946e-03	ci right 1.754129e-03	k: 4757	n:2790000
Cons ci ratio: 1.153201e-01	ci left: 3.901017e-04	ci right 4.381853e-04	k: 1154	n:2790000
KS ci ratio: 5.048449e-03	ci left: 1.772495e-01	ci right 1.781469e-01	k: 495777	n:2790000
TCERG1L   2790000 perm   3973 sec   (702 perm/sec)   p_kst 1.776978e-01   p_cons 4.136201e-04   p_joint 1.705018e-03

Joint ci ratio: 5.664421e-02	ci left: 1.659126e-03	ci right 1.756195e-03	k: 4780	n:2800000
Cons ci ratio: 1.150217e-01	ci left: 3.907896e-04	ci right 4.388249e-04	k: 1160	n:2800000
KS ci ratio: 5.039463e-03	ci left: 1.772481e-01	ci right 1.781440e-01	k: 497548	n:2800000
TCERG1L   2800000 perm   4000 sec   (700 perm/sec)   p_kst 1.776957e-01   p_cons 4.142857e-04   p_joint 1.707143e-03

Joint ci ratio: 5.712514e-02	ci left: 1.625156e-03	ci right 1.721071e-03	k: 4700	n:2810000
Cons ci ratio: 1.147748e-01	ci left: 3.911271e-04	ci right 4.390937e-04	k: 1165	n:2810000
KS ci ratio: 5.030243e-03	ci left: 1.772632e-01	ci right 1.781574e-01	k: 499365	n:2810000
TCERG1L   2810000 perm   4026 sec   (698 perm/sec)   p_kst 1.777100e-01   p_cons 4.145907e-04   p_joint 1.672598e-03

Joint ci ratio: 5.737648e-02	ci left: 1.605062e-03	ci right 1.700221e-03	k: 4659	n:2820000
Cons ci ratio: 1.146765e-01	ci left: 3.904290e-04	ci right 4.382662e-04	k: 1167	n:2820000
KS ci ratio: 5.021359e-03	ci left: 1.772614e-01	ci right 1.781541e-01	k: 501135	n:2820000
TCERG1L   2820000 perm   4053 sec   (696 perm/sec)   p_kst 1.777074e-01   p_cons 4.138298e-04   p_joint 1.652128e-03

Joint ci ratio: 5.787640e-02	ci left: 1.571528e-03	ci right 1.665539e-03	k: 4579	n:2830000
Cons ci ratio: 1.143831e-01	ci left: 3.911088e-04	ci right 4.388984e-04	k: 1173	n:2830000
KS ci ratio: 5.012686e-03	ci left: 1.772502e-01	ci right 1.781413e-01	k: 502878	n:2830000
TCERG1L   2830000 perm   4081 sec   (693 perm/sec)   p_kst 1.776954e-01   p_cons 4.144876e-04   p_joint 1.618021e-03

Joint ci ratio: 5.777558e-02	ci left: 1.571547e-03	ci right 1.665389e-03	k: 4595	n:2840000
Cons ci ratio: 1.140435e-01	ci left: 3.921260e-04	ci right 4.398881e-04	k: 1180	n:2840000
KS ci ratio: 5.003498e-03	ci left: 1.772718e-01	ci right 1.781613e-01	k: 504714	n:2840000
TCERG1L   2840000 perm   4108 sec   (691 perm/sec)   p_kst 1.777162e-01   p_cons 4.154930e-04   p_joint 1.617958e-03

Joint ci ratio: 5.766901e-02	ci left: 1.571912e-03	ci right 1.665597e-03	k: 4612	n:2850000
Cons ci ratio: 1.137549e-01	ci left: 3.927955e-04	ci right 4.405099e-04	k: 1186	n:2850000
KS ci ratio: 4.995019e-03	ci left: 1.772546e-01	ci right 1.781425e-01	k: 506440	n:2850000
TCERG1L   2850000 perm   4136 sec   (689 perm/sec)   p_kst 1.776982e-01   p_cons 4.161404e-04   p_joint 1.618246e-03

Joint ci ratio: 5.793394e-02	ci left: 1.551942e-03	ci right 1.644876e-03	k: 4570	n:2860000
Cons ci ratio: 1.134685e-01	ci left: 3.934603e-04	ci right 4.411271e-04	k: 1192	n:2860000
KS ci ratio: 4.986243e-03	ci left: 1.772575e-01	ci right 1.781439e-01	k: 508223	n:2860000
TCERG1L   2860000 perm   4163 sec   (687 perm/sec)   p_kst 1.777003e-01   p_cons 4.167832e-04   p_joint 1.597902e-03

Joint ci ratio: 5.786441e-02	ci left: 1.550312e-03	ci right 1.643033e-03	k: 4581	n:2870000
Cons ci ratio: 1.133735e-01	ci left: 3.927665e-04	ci right 4.403067e-04	k: 1194	n:2870000
KS ci ratio: 4.977649e-03	ci left: 1.772523e-01	ci right 1.781372e-01	k: 509983	n:2870000
TCERG1L   2870000 perm   4190 sec   (685 perm/sec)   p_kst 1.776944e-01   p_cons 4.160279e-04   p_joint 1.596167e-03

Joint ci ratio: 5.775735e-02	ci left: 1.550746e-03	ci right 1.643316e-03	k: 4598	n:2880000
Cons ci ratio: 1.131371e-01	ci left: 3.930896e-04	ci right 4.405632e-04	k: 1199	n:2880000
KS ci ratio: 4.968645e-03	ci left: 1.772739e-01	ci right 1.781573e-01	k: 511820	n:2880000
TCERG1L   2880000 perm   4218 sec   (683 perm/sec)   p_kst 1.777153e-01   p_cons 4.163194e-04   p_joint 1.596528e-03

Joint ci ratio: 5.766966e-02	ci left: 1.550155e-03	ci right 1.642544e-03	k: 4612	n:2890000
Cons ci ratio: 1.129959e-01	ci left: 3.927382e-04	ci right 4.401061e-04	k: 1202	n:2890000
KS ci ratio: 4.959972e-03	ci left: 1.772788e-01	ci right 1.781606e-01	k: 513609	n:2890000
TCERG1L   2890000 perm   4246 sec   (681 perm/sec)   p_kst 1.777194e-01   p_cons 4.159170e-04   p_joint 1.595848e-03

Joint ci ratio: 5.756991e-02	ci left: 1.550247e-03	ci right 1.642477e-03	k: 4628	n:2900000
Cons ci ratio: 1.128553e-01	ci left: 3.923892e-04	ci right 4.396522e-04	k: 1205	n:2900000
KS ci ratio: 4.951876e-03	ci left: 1.772523e-01	ci right 1.781325e-01	k: 515307	n:2900000
TCERG1L   2900000 perm   4274 sec   (678 perm/sec)   p_kst 1.776921e-01   p_cons 4.155172e-04   p_joint 1.595862e-03

Joint ci ratio: 5.747067e-02	ci left: 1.550339e-03	ci right 1.642410e-03	k: 4644	n:2910000
Cons ci ratio: 1.126686e-01	ci left: 3.923765e-04	ci right 4.395547e-04	k: 1209	n:2910000
KS ci ratio: 4.943301e-03	ci left: 1.772565e-01	ci right 1.781352e-01	k: 517094	n:2910000
TCERG1L   2910000 perm   4302 sec   (676 perm/sec)   p_kst 1.776955e-01   p_cons 4.154639e-04   p_joint 1.595876e-03

Joint ci ratio: 5.762011e-02	ci left: 1.536928e-03	ci right 1.628448e-03	k: 4620	n:2920000
Cons ci ratio: 1.123903e-01	ci left: 3.930298e-04	ci right 4.401620e-04	k: 1215	n:2920000
KS ci ratio: 4.935107e-03	ci left: 1.772408e-01	ci right 1.781180e-01	k: 518823	n:2920000
TCERG1L   2920000 perm   4330 sec   (674 perm/sec)   p_kst 1.776791e-01   p_cons 4.160959e-04   p_joint 1.582192e-03

Joint ci ratio: 5.751440e-02	ci left: 1.537401e-03	ci right 1.628776e-03	k: 4637	n:2930000
Cons ci ratio: 1.122980e-01	ci left: 3.923518e-04	ci right 4.393615e-04	k: 1217	n:2930000
KS ci ratio: 4.926642e-03	ci left: 1.772437e-01	ci right 1.781194e-01	k: 520606	n:2930000
TCERG1L   2930000 perm   4359 sec   (672 perm/sec)   p_kst 1.776812e-01   p_cons 4.153584e-04   p_joint 1.582594e-03

Joint ci ratio: 5.743400e-02	ci left: 1.536530e-03	ci right 1.627721e-03	k: 4650	n:2940000
Cons ci ratio: 1.121141e-01	ci left: 3.923396e-04	ci right 4.392658e-04	k: 1221	n:2940000
KS ci ratio: 4.918622e-03	ci left: 1.772228e-01	ci right 1.780969e-01	k: 522319	n:2940000
TCERG1L   2940000 perm   4388 sec   (670 perm/sec)   p_kst 1.776595e-01   p_cons 4.153061e-04   p_joint 1.581633e-03

Joint ci ratio: 5.732931e-02	ci left: 1.537002e-03	ci right 1.628049e-03	k: 4667	n:2950000
Cons ci ratio: 1.117488e-01	ci left: 3.936456e-04	ci right 4.405645e-04	k: 1229	n:2950000
KS ci ratio: 4.910139e-03	ci left: 1.772318e-01	ci right 1.781045e-01	k: 524120	n:2950000
TCERG1L   2950000 perm   4416 sec   (668 perm/sec)   p_kst 1.776678e-01   p_cons 4.166102e-04   p_joint 1.582034e-03

Joint ci ratio: 5.779007e-02	ci left: 1.507168e-03	ci right 1.597190e-03	k: 4593	n:2960000
Cons ci ratio: 1.114321e-01	ci left: 3.946146e-04	ci right 4.415069e-04	k: 1236	n:2960000
KS ci ratio: 4.901729e-03	ci left: 1.772390e-01	ci right 1.781103e-01	k: 525916	n:2960000
TCERG1L   2960000 perm   4445 sec   (666 perm/sec)   p_kst 1.776743e-01   p_cons 4.175676e-04   p_joint 1.551689e-03

Joint ci ratio: 5.768343e-02	ci left: 1.507735e-03	ci right 1.597618e-03	k: 4610	n:2970000
Cons ci ratio: 1.111181e-01	ci left: 3.955772e-04	ci right 4.424428e-04	k: 1243	n:2970000
KS ci ratio: 4.893468e-03	ci left: 1.772398e-01	ci right 1.781096e-01	k: 527693	n:2970000
TCERG1L   2970000 perm   4474 sec   (664 perm/sec)   p_kst 1.776744e-01   p_cons 4.185185e-04   p_joint 1.552189e-03

Joint ci ratio: 5.754624e-02	ci left: 1.509952e-03	ci right 1.599746e-03	k: 4632	n:2980000
Cons ci ratio: 1.110735e-01	ci left: 3.945760e-04	ci right 4.413030e-04	k: 1244	n:2980000
KS ci ratio: 4.885378e-03	ci left: 1.772329e-01	ci right 1.781012e-01	k: 529447	n:2980000
TCERG1L   2980000 perm   4503 sec   (662 perm/sec)   p_kst 1.776668e-01   p_cons 4.174497e-04   p_joint 1.554362e-03

Joint ci ratio: 5.767120e-02	ci left: 1.498309e-03	ci right 1.587611e-03	k: 4612	n:2990000
Cons ci ratio: 1.109845e-01	ci left: 3.939067e-04	ci right 4.405146e-04	k: 1246	n:2990000
KS ci ratio: 4.877016e-03	ci left: 1.772448e-01	ci right 1.781117e-01	k: 531257	n:2990000
TCERG1L   2990000 perm   4532 sec   (660 perm/sec)   p_kst 1.776779e-01   p_cons 4.167224e-04   p_joint 1.542475e-03

Joint ci ratio: 5.753411e-02	ci left: 1.500542e-03	ci right 1.589758e-03	k: 4634	n:3000000
Cons ci ratio: 1.107626e-01	ci left: 3.942141e-04	ci right 4.407590e-04	k: 1251	n:3000000
KS ci ratio: 4.868763e-03	ci left: 1.772526e-01	ci right 1.781180e-01	k: 533055	n:3000000
TCERG1L   3000000 perm   4561 sec   (658 perm/sec)   p_kst 1.776850e-01   p_cons 4.170000e-04   p_joint 1.544667e-03

Joint ci ratio: 5.745362e-02	ci left: 1.499814e-03	ci right 1.588857e-03	k: 4647	n:3010000
Cons ci ratio: 1.106743e-01	ci left: 3.935505e-04	ci right 4.399776e-04	k: 1253	n:3010000
KS ci ratio: 4.860679e-03	ci left: 1.772527e-01	ci right 1.781167e-01	k: 534830	n:3010000
TCERG1L   3010000 perm   4592 sec   (656 perm/sec)   p_kst 1.776844e-01   p_cons 4.162791e-04   p_joint 1.543854e-03

Joint ci ratio: 5.824347e-02	ci left: 1.454055e-03	ci right 1.541608e-03	k: 4522	n:3020000
Cons ci ratio: 1.105422e-01	ci left: 3.932132e-04	ci right 4.395416e-04	k: 1256	n:3020000
KS ci ratio: 4.852497e-03	ci left: 1.772611e-01	ci right 1.781236e-01	k: 536630	n:3020000
TCERG1L   3020000 perm   4621 sec   (654 perm/sec)   p_kst 1.776921e-01   p_cons 4.158940e-04   p_joint 1.497351e-03

Joint ci ratio: 6.129856e-02	ci left: 1.306532e-03	ci right 1.389475e-03	k: 4083	n:3030000
Cons ci ratio: 1.104983e-01	ci left: 3.922364e-04	ci right 4.384301e-04	k: 1257	n:3030000
KS ci ratio: 4.844735e-03	ci left: 1.772466e-01	ci right 1.781078e-01	k: 538361	n:3030000
TCERG1L   3030000 perm   4650 sec   (652 perm/sec)   p_kst 1.776769e-01   p_cons 4.148515e-04   p_joint 1.347525e-03

Joint ci ratio: 6.117881e-02	ci left: 1.307417e-03	ci right 1.390248e-03	k: 4099	n:3040000
Cons ci ratio: 1.102357e-01	ci left: 3.928653e-04	ci right 4.390160e-04	k: 1263	n:3040000
KS ci ratio: 4.836938e-03	ci left: 1.772366e-01	ci right 1.780963e-01	k: 540105	n:3040000
TCERG1L   3040000 perm   4679 sec   (650 perm/sec)   p_kst 1.776661e-01   p_cons 4.154605e-04   p_joint 1.348355e-03

Joint ci ratio: 6.109693e-02	ci left: 1.306682e-03	ci right 1.389352e-03	k: 4110	n:3050000
Cons ci ratio: 1.101486e-01	ci left: 3.922149e-04	ci right 4.382504e-04	k: 1265	n:3050000
KS ci ratio: 4.828908e-03	ci left: 1.772430e-01	ci right 1.781012e-01	k: 541899	n:3050000
TCERG1L   3050000 perm   4708 sec   (648 perm/sec)   p_kst 1.776718e-01   p_cons 4.147541e-04   p_joint 1.347541e-03

Joint ci ratio: 6.102279e-02	ci left: 1.305629e-03	ci right 1.388129e-03	k: 4120	n:3060000
Cons ci ratio: 1.099750e-01	ci left: 3.922044e-04	ci right 4.381614e-04	k: 1269	n:3060000
KS ci ratio: 4.821333e-03	ci left: 1.772242e-01	ci right 1.780810e-01	k: 543616	n:3060000
TCERG1L   3060000 perm   4738 sec   (646 perm/sec)   p_kst 1.776523e-01   p_cons 4.147059e-04   p_joint 1.346405e-03

Joint ci ratio: 6.091202e-02	ci left: 1.306188e-03	ci right 1.388568e-03	k: 4135	n:3070000
Cons ci ratio: 1.097591e-01	ci left: 3.925107e-04	ci right 4.384076e-04	k: 1274	n:3070000
KS ci ratio: 4.813520e-03	ci left: 1.772221e-01	ci right 1.780775e-01	k: 545384	n:3070000
TCERG1L   3070000 perm   4767 sec   (644 perm/sec)   p_kst 1.776495e-01   p_cons 4.149837e-04   p_joint 1.346906e-03

Joint ci ratio: 6.103789e-02	ci left: 1.296512e-03	ci right 1.378456e-03	k: 4118	n:3080000
Cons ci ratio: 1.096303e-01	ci left: 3.921837e-04	ci right 4.379849e-04	k: 1277	n:3080000
KS ci ratio: 4.805414e-03	ci left: 1.772401e-01	ci right 1.780942e-01	k: 547214	n:3080000
TCERG1L   3080000 perm   4796 sec   (642 perm/sec)   p_kst 1.776669e-01   p_cons 4.146104e-04   p_joint 1.337013e-03

Joint ci ratio: 6.094180e-02	ci left: 1.296459e-03	ci right 1.378267e-03	k: 4131	n:3090000
Cons ci ratio: 1.093312e-01	ci left: 3.931178e-04	ci right 4.388948e-04	k: 1284	n:3090000
KS ci ratio: 4.797827e-03	ci left: 1.772290e-01	ci right 1.780817e-01	k: 548954	n:3090000
TCERG1L   3090000 perm   4826 sec   (640 perm/sec)   p_kst 1.776550e-01   p_cons 4.155340e-04   p_joint 1.336893e-03

Joint ci ratio: 6.110504e-02	ci left: 1.285288e-03	ci right 1.366616e-03	k: 4109	n:3100000
Cons ci ratio: 1.092038e-01	ci left: 3.927910e-04	ci right 4.384732e-04	k: 1287	n:3100000
KS ci ratio: 4.790001e-03	ci left: 1.772347e-01	ci right 1.780860e-01	k: 550746	n:3100000
TCERG1L   3100000 perm   4855 sec   (638 perm/sec)   p_kst 1.776600e-01   p_cons 4.151613e-04   p_joint 1.325484e-03

Joint ci ratio: 6.099382e-02	ci left: 1.285905e-03	ci right 1.367118e-03	k: 4124	n:3110000
Cons ci ratio: 1.089925e-01	ci left: 3.930918e-04	ci right 4.387149e-04	k: 1292	n:3110000
KS ci ratio: 4.782644e-03	ci left: 1.772139e-01	ci right 1.780638e-01	k: 552456	n:3110000
TCERG1L   3110000 perm   4885 sec   (637 perm/sec)   p_kst 1.776386e-01   p_cons 4.154341e-04   p_joint 1.326045e-03

Joint ci ratio: 6.088320e-02	ci left: 1.286518e-03	ci right 1.367617e-03	k: 4139	n:3120000
Cons ci ratio: 1.086986e-01	ci left: 3.940144e-04	ci right 4.396134e-04	k: 1299	n:3120000
KS ci ratio: 4.774996e-03	ci left: 1.772132e-01	ci right 1.780617e-01	k: 554228	n:3120000
TCERG1L   3120000 perm   4915 sec   (635 perm/sec)   p_kst 1.776372e-01   p_cons 4.163462e-04   p_joint 1.326603e-03

Joint ci ratio: 6.137516e-02	ci left: 1.261643e-03	ci right 1.341840e-03	k: 4073	n:3130000
Cons ci ratio: 1.084070e-01	ci left: 3.949313e-04	ci right 4.405060e-04	k: 1306	n:3130000
KS ci ratio: 4.767229e-03	ci left: 1.772221e-01	ci right 1.780693e-01	k: 556030	n:3130000
TCERG1L   3130000 perm   4945 sec   (633 perm/sec)   p_kst 1.776454e-01   p_cons 4.172524e-04   p_joint 1.301278e-03

Joint ci ratio: 6.138283e-02	ci left: 1.257311e-03	ci right 1.337243e-03	k: 4072	n:3140000
Cons ci ratio: 1.082829e-01	ci left: 3.946031e-04	ci right 4.400844e-04	k: 1309	n:3140000
KS ci ratio: 4.759930e-03	ci left: 1.772045e-01	ci right 1.780503e-01	k: 557749	n:3140000
TCERG1L   3140000 perm   4976 sec   (631 perm/sec)   p_kst 1.776271e-01   p_cons 4.168790e-04   p_joint 1.296815e-03

Joint ci ratio: 6.126259e-02	ci left: 1.258321e-03	ci right 1.338155e-03	k: 4088	n:3150000
Cons ci ratio: 1.080357e-01	ci left: 3.952036e-04	ci right 4.406436e-04	k: 1315	n:3150000
KS ci ratio: 4.752060e-03	ci left: 1.772241e-01	ci right 1.780686e-01	k: 559585	n:3150000
TCERG1L   3150000 perm   5006 sec   (629 perm/sec)   p_kst 1.776460e-01   p_cons 4.174603e-04   p_joint 1.297778e-03

Joint ci ratio: 5.499265e-02	ci left: 1.561225e-03	ci right 1.649818e-03	k: 5072	n:3160000
Cons ci ratio: 1.078719e-01	ci left: 3.951846e-04	ci right 4.405491e-04	k: 1319	n:3160000
KS ci ratio: 4.744769e-03	ci left: 1.772104e-01	ci right 1.780535e-01	k: 561316	n:3160000
TCERG1L   3160000 perm   5036 sec   (627 perm/sec)   p_kst 1.776316e-01   p_cons 4.174051e-04   p_joint 1.605063e-03

Joint ci ratio: 5.488454e-02	ci left: 1.562523e-03	ci right 1.651010e-03	k: 5092	n:3170000
Cons ci ratio: 1.077088e-01	ci left: 3.951658e-04	ci right 4.404552e-04	k: 1323	n:3170000
KS ci ratio: 4.737321e-03	ci left: 1.772084e-01	ci right 1.780502e-01	k: 563084	n:3170000
TCERG1L   3170000 perm   5067 sec   (626 perm/sec)   p_kst 1.776290e-01   p_cons 4.173502e-04   p_joint 1.606309e-03

Joint ci ratio: 5.480390e-02	ci left: 1.562262e-03	ci right 1.650600e-03	k: 5107	n:3180000
Cons ci ratio: 1.075465e-01	ci left: 3.951472e-04	ci right 4.403619e-04	k: 1327	n:3180000
KS ci ratio: 4.729914e-03	ci left: 1.772062e-01	ci right 1.780466e-01	k: 564851	n:3180000
TCERG1L   3180000 perm   5097 sec   (624 perm/sec)   p_kst 1.776261e-01   p_cons 4.172956e-04   p_joint 1.605975e-03

Joint ci ratio: 5.471292e-02	ci left: 1.562620e-03	ci right 1.650827e-03	k: 5124	n:3190000
Cons ci ratio: 1.073446e-01	ci left: 3.954337e-04	ci right 4.405909e-04	k: 1332	n:3190000
KS ci ratio: 4.722527e-03	ci left: 1.772049e-01	ci right 1.780440e-01	k: 566621	n:3190000
TCERG1L   3190000 perm   5127 sec   (622 perm/sec)   p_kst 1.776241e-01   p_cons 4.175549e-04   p_joint 1.606270e-03

Joint ci ratio: 5.463836e-02	ci left: 1.562052e-03	ci right 1.650103e-03	k: 5138	n:3200000
Cons ci ratio: 1.071839e-01	ci left: 3.954145e-04	ci right 4.404976e-04	k: 1336	n:3200000
KS ci ratio: 4.714851e-03	ci left: 1.772236e-01	ci right 1.780614e-01	k: 568455	n:3200000
TCERG1L   3200000 perm   5158 sec   (620 perm/sec)   p_kst 1.776422e-01   p_cons 4.175000e-04   p_joint 1.605625e-03

Joint ci ratio: 5.460127e-02	ci left: 1.559337e-03	ci right 1.647173e-03	k: 5145	n:3210000
Cons ci ratio: 1.071039e-01	ci left: 3.947890e-04	ci right 4.397651e-04	k: 1338	n:3210000
KS ci ratio: 4.707618e-03	ci left: 1.772169e-01	ci right 1.780534e-01	k: 570208	n:3210000
TCERG1L   3210000 perm   5188 sec   (619 perm/sec)   p_kst 1.776349e-01   p_cons 4.168224e-04   p_joint 1.602804e-03

Joint ci ratio: 5.452187e-02	ci left: 1.559089e-03	ci right 1.646780e-03	k: 5160	n:3220000
Cons ci ratio: 1.069841e-01	ci left: 3.944697e-04	ci right 4.393560e-04	k: 1341	n:3220000
KS ci ratio: 4.700339e-03	ci left: 1.772153e-01	ci right 1.780505e-01	k: 571977	n:3220000
TCERG1L   3220000 perm   5219 sec   (617 perm/sec)   p_kst 1.776326e-01   p_cons 4.164596e-04   p_joint 1.602484e-03

Joint ci ratio: 5.470812e-02	ci left: 1.543574e-03	ci right 1.630698e-03	k: 5125	n:3230000
Cons ci ratio: 1.069443e-01	ci left: 3.935497e-04	ci right 4.383136e-04	k: 1342	n:3230000
KS ci ratio: 4.692806e-03	ci left: 1.772316e-01	ci right 1.780656e-01	k: 573804	n:3230000
TCERG1L   3230000 perm   5250 sec   (615 perm/sec)   p_kst 1.776483e-01   p_cons 4.154799e-04   p_joint 1.586687e-03

Joint ci ratio: 5.458043e-02	ci left: 1.546116e-03	ci right 1.633173e-03	k: 5149	n:3240000
Cons ci ratio: 1.065877e-01	ci left: 3.950387e-04	ci right 4.398127e-04	k: 1351	n:3240000
KS ci ratio: 4.685719e-03	ci left: 1.772222e-01	ci right 1.780549e-01	k: 575548	n:3240000
TCERG1L   3240000 perm   5280 sec   (614 perm/sec)   p_kst 1.776383e-01   p_cons 4.169753e-04   p_joint 1.589198e-03

Joint ci ratio: 5.447472e-02	ci left: 1.547429e-03	ci right 1.634386e-03	k: 5169	n:3250000
Cons ci ratio: 1.064696e-01	ci left: 3.947216e-04	ci right 4.394071e-04	k: 1354	n:3250000
KS ci ratio: 4.678014e-03	ci left: 1.772535e-01	ci right 1.780849e-01	k: 577424	n:3250000
TCERG1L   3250000 perm   5310 sec   (612 perm/sec)   p_kst 1.776689e-01   p_cons 4.166154e-04   p_joint 1.590462e-03

Joint ci ratio: 5.434865e-02	ci left: 1.549944e-03	ci right 1.636835e-03	k: 5193	n:3260000
Cons ci ratio: 1.061567e-01	ci left: 3.958996e-04	ci right 4.405784e-04	k: 1362	n:3260000
KS ci ratio: 4.670773e-03	ci left: 1.772579e-01	ci right 1.780881e-01	k: 579213	n:3260000
TCERG1L   3260000 perm   5341 sec   (610 perm/sec)   p_kst 1.776727e-01   p_cons 4.177914e-04   p_joint 1.592945e-03

Joint ci ratio: 5.427557e-02	ci left: 1.549427e-03	ci right 1.636169e-03	k: 5207	n:3270000
Cons ci ratio: 1.060012e-01	ci left: 3.958797e-04	ci right 4.404868e-04	k: 1366	n:3270000
KS ci ratio: 4.663795e-03	ci left: 1.772479e-01	ci right 1.780768e-01	k: 580955	n:3270000
TCERG1L   3270000 perm   5372 sec   (609 perm/sec)   p_kst 1.776621e-01   p_cons 4.177370e-04   p_joint 1.592355e-03

Joint ci ratio: 5.419239e-02	ci left: 1.549515e-03	ci right 1.636124e-03	k: 5223	n:3280000
Cons ci ratio: 1.058079e-01	ci left: 3.961567e-04	ci right 4.407086e-04	k: 1371	n:3280000
KS ci ratio: 4.656688e-03	ci left: 1.772481e-01	ci right 1.780757e-01	k: 582730	n:3280000
TCERG1L   3280000 perm   5403 sec   (607 perm/sec)   p_kst 1.776616e-01   p_cons 4.179878e-04   p_joint 1.592378e-03

Joint ci ratio: 5.413546e-02	ci left: 1.548104e-03	ci right 1.634540e-03	k: 5234	n:3290000
Cons ci ratio: 1.056540e-01	ci left: 3.961363e-04	ci right 4.406170e-04	k: 1375	n:3290000
KS ci ratio: 4.649435e-03	ci left: 1.772594e-01	ci right 1.780858e-01	k: 584542	n:3290000
TCERG1L   3290000 perm   5435 sec   (605 perm/sec)   p_kst 1.776723e-01   p_cons 4.179331e-04   p_joint 1.590881e-03

Joint ci ratio: 5.775694e-02	ci left: 1.353673e-03	ci right 1.434479e-03	k: 4599	n:3300000
Cons ci ratio: 1.054626e-01	ci left: 3.964110e-04	ci right 4.408369e-04	k: 1380	n:3300000
KS ci ratio: 4.642350e-03	ci left: 1.772623e-01	ci right 1.780874e-01	k: 586326	n:3300000
TCERG1L   3300000 perm   5466 sec   (604 perm/sec)   p_kst 1.776745e-01   p_cons 4.181818e-04   p_joint 1.393636e-03

Joint ci ratio: 5.769430e-02	ci left: 1.352561e-03	ci right 1.433210e-03	k: 4609	n:3310000
Cons ci ratio: 1.053482e-01	ci left: 3.960958e-04	ci right 4.404353e-04	k: 1383	n:3310000
KS ci ratio: 4.635211e-03	ci left: 1.772705e-01	ci right 1.780944e-01	k: 588128	n:3310000
TCERG1L   3310000 perm   5497 sec   (602 perm/sec)   p_kst 1.776822e-01   p_cons 4.178248e-04   p_joint 1.392447e-03

Joint ci ratio: 5.761937e-02	ci left: 1.352049e-03	ci right 1.432559e-03	k: 4621	n:3320000
Cons ci ratio: 1.052722e-01	ci left: 3.954893e-04	ci right 4.397270e-04	k: 1385	n:3320000
KS ci ratio: 4.628057e-03	ci left: 1.772817e-01	ci right 1.781044e-01	k: 589940	n:3320000
TCERG1L   3320000 perm   5529 sec   (601 perm/sec)   p_kst 1.776928e-01   p_cons 4.171687e-04   p_joint 1.391867e-03

Joint ci ratio: 5.778247e-02	ci left: 1.340294e-03	ci right 1.420337e-03	k: 4595	n:3330000
Cons ci ratio: 1.051585e-01	ci left: 3.951789e-04	ci right 4.393311e-04	k: 1388	n:3330000
KS ci ratio: 4.621202e-03	ci left: 1.772761e-01	ci right 1.780975e-01	k: 591696	n:3330000
TCERG1L   3330000 perm   5560 sec   (599 perm/sec)   p_kst 1.776865e-01   p_cons 4.168168e-04   p_joint 1.379880e-03

Joint ci ratio: 5.767587e-02	ci left: 1.341297e-03	ci right 1.421248e-03	k: 4612	n:3340000
Cons ci ratio: 1.050074e-01	ci left: 3.951618e-04	ci right 4.392448e-04	k: 1392	n:3340000
KS ci ratio: 4.614288e-03	ci left: 1.772761e-01	ci right 1.780963e-01	k: 593471	n:3340000
TCERG1L   3340000 perm   5592 sec   (597 perm/sec)   p_kst 1.776859e-01   p_cons 4.167665e-04   p_joint 1.380838e-03

Joint ci ratio: 5.754497e-02	ci left: 1.343472e-03	ci right 1.423364e-03	k: 4633	n:3350000
Cons ci ratio: 1.047819e-01	ci left: 3.957263e-04	ci right 4.397716e-04	k: 1398	n:3350000
KS ci ratio: 4.607555e-03	ci left: 1.772666e-01	ci right 1.780856e-01	k: 595214	n:3350000
TCERG1L   3350000 perm   5624 sec   (596 perm/sec)   p_kst 1.776758e-01   p_cons 4.173134e-04   p_joint 1.382985e-03

Joint ci ratio: 5.750162e-02	ci left: 1.341527e-03	ci right 1.421241e-03	k: 4640	n:3360000
Cons ci ratio: 1.046698e-01	ci left: 3.954180e-04	ci right 4.393790e-04	k: 1401	n:3360000
KS ci ratio: 4.601175e-03	ci left: 1.772367e-01	ci right 1.780543e-01	k: 596888	n:3360000
TCERG1L   3360000 perm   5656 sec   (594 perm/sec)   p_kst 1.776452e-01   p_cons 4.169643e-04   p_joint 1.380952e-03

Joint ci ratio: 5.315890e-02	ci left: 1.568149e-03	ci right 1.654076e-03	k: 5428	n:3370000
Cons ci ratio: 1.043724e-01	ci left: 3.965565e-04	ci right 4.405111e-04	k: 1409	n:3370000
KS ci ratio: 4.594378e-03	ci left: 1.772351e-01	ci right 1.780515e-01	k: 598657	n:3370000
TCERG1L   3370000 perm   5688 sec   (592 perm/sec)   p_kst 1.776430e-01   p_cons 4.181009e-04   p_joint 1.610682e-03

Joint ci ratio: 5.310028e-02	ci left: 1.567012e-03	ci right 1.652780e-03	k: 5440	n:3380000
Cons ci ratio: 1.041510e-01	ci left: 3.971121e-04	ci right 4.410292e-04	k: 1415	n:3380000
KS ci ratio: 4.587300e-03	ci left: 1.772533e-01	ci right 1.780686e-01	k: 600493	n:3380000
TCERG1L   3380000 perm   5721 sec   (591 perm/sec)   p_kst 1.776607e-01   p_cons 4.186391e-04   p_joint 1.609467e-03

Joint ci ratio: 5.327230e-02	ci left: 1.552202e-03	ci right 1.637443e-03	k: 5405	n:3390000
Cons ci ratio: 1.040042e-01	ci left: 3.970899e-04	ci right 4.409389e-04	k: 1419	n:3390000
KS ci ratio: 4.580523e-03	ci left: 1.772543e-01	ci right 1.780684e-01	k: 602271	n:3390000
TCERG1L   3390000 perm   5753 sec   (589 perm/sec)   p_kst 1.776611e-01   p_cons 4.185841e-04   p_joint 1.594395e-03

Joint ci ratio: 5.318872e-02	ci left: 1.552570e-03	ci right 1.637694e-03	k: 5422	n:3400000
Cons ci ratio: 1.037851e-01	ci left: 3.976409e-04	ci right 4.414526e-04	k: 1425	n:3400000
KS ci ratio: 4.573692e-03	ci left: 1.772606e-01	ci right 1.780735e-01	k: 604067	n:3400000
TCERG1L   3400000 perm   5789 sec   (587 perm/sec)   p_kst 1.776668e-01   p_cons 4.191176e-04   p_joint 1.594706e-03

Joint ci ratio: 5.309088e-02	ci left: 1.553805e-03	ci right 1.638834e-03	k: 5442	n:3410000
Cons ci ratio: 1.036036e-01	ci left: 3.979030e-04	ci right 4.416623e-04	k: 1430	n:3410000
KS ci ratio: 4.566659e-03	ci left: 1.772818e-01	ci right 1.780935e-01	k: 605914	n:3410000
TCERG1L   3410000 perm   5821 sec   (586 perm/sec)   p_kst 1.776874e-01   p_cons 4.193548e-04   p_joint 1.595894e-03

Joint ci ratio: 5.300330e-02	ci left: 1.554455e-03	ci right 1.639375e-03	k: 5460	n:3420000
Cons ci ratio: 1.034231e-01	ci left: 3.981637e-04	ci right 4.418707e-04	k: 1435	n:3420000
KS ci ratio: 4.559717e-03	ci left: 1.772991e-01	ci right 1.781096e-01	k: 607748	n:3420000
TCERG1L   3420000 perm   5853 sec   (584 perm/sec)   p_kst 1.777041e-01   p_cons 4.195906e-04   p_joint 1.596491e-03

Joint ci ratio: 5.293550e-02	ci left: 1.553950e-03	ci right 1.638731e-03	k: 5474	n:3430000
Cons ci ratio: 1.032435e-01	ci left: 3.984229e-04	ci right 4.420778e-04	k: 1440	n:3430000
KS ci ratio: 4.552957e-03	ci left: 1.773067e-01	ci right 1.781160e-01	k: 609549	n:3430000
TCERG1L   3430000 perm   5885 sec   (583 perm/sec)   p_kst 1.777111e-01   p_cons 4.198251e-04   p_joint 1.595918e-03

Joint ci ratio: 5.288727e-02	ci left: 1.552302e-03	ci right 1.636913e-03	k: 5484	n:3440000
Cons ci ratio: 1.030648e-01	ci left: 3.986807e-04	ci right 4.422837e-04	k: 1445	n:3440000
KS ci ratio: 4.546425e-03	ci left: 1.773014e-01	ci right 1.781096e-01	k: 611306	n:3440000
TCERG1L   3440000 perm   5918 sec   (581 perm/sec)   p_kst 1.777052e-01   p_cons 4.200581e-04   p_joint 1.594186e-03

Joint ci ratio: 5.281511e-02	ci left: 1.552093e-03	ci right 1.636574e-03	k: 5499	n:3450000
Cons ci ratio: 1.028871e-01	ci left: 3.989371e-04	ci right 4.424883e-04	k: 1450	n:3450000
KS ci ratio: 4.539773e-03	ci left: 1.773057e-01	ci right 1.781128e-01	k: 613096	n:3450000
TCERG1L   3450000 perm   5951 sec   (580 perm/sec)   p_kst 1.777090e-01   p_cons 4.202899e-04   p_joint 1.593913e-03

Joint ci ratio: 5.274804e-02	ci left: 1.551600e-03	ci right 1.635943e-03	k: 5513	n:3460000
Cons ci ratio: 1.027103e-01	ci left: 3.991920e-04	ci right 4.426916e-04	k: 1455	n:3460000
KS ci ratio: 4.533500e-03	ci left: 1.772875e-01	ci right 1.780934e-01	k: 614808	n:3460000
TCERG1L   3460000 perm   5983 sec   (578 perm/sec)   p_kst 1.776902e-01   p_cons 4.205202e-04   p_joint 1.593353e-03

Joint ci ratio: 5.282016e-02	ci left: 1.542862e-03	ci right 1.626849e-03	k: 5498	n:3470000
Cons ci ratio: 1.023593e-01	ci left: 4.008496e-04	ci right 4.443716e-04	k: 1465	n:3470000
KS ci ratio: 4.526944e-03	ci left: 1.772893e-01	ci right 1.780940e-01	k: 616589	n:3470000
TCERG1L   3470000 perm   6016 sec   (577 perm/sec)   p_kst 1.776914e-01   p_cons 4.221902e-04   p_joint 1.584438e-03

Joint ci ratio: 5.273870e-02	ci left: 1.543249e-03	ci right 1.627124e-03	k: 5515	n:3480000
Cons ci ratio: 1.022547e-01	ci left: 4.005377e-04	ci right 4.439788e-04	k: 1468	n:3480000
KS ci ratio: 4.520488e-03	ci left: 1.772864e-01	ci right 1.780900e-01	k: 618354	n:3480000
TCERG1L   3480000 perm   6049 sec   (575 perm/sec)   p_kst 1.776879e-01   p_cons 4.218391e-04   p_joint 1.584770e-03

Joint ci ratio: 5.283484e-02	ci left: 1.533172e-03	ci right 1.616656e-03	k: 5495	n:3490000
Cons ci ratio: 1.021158e-01	ci left: 4.005069e-04	ci right 4.438820e-04	k: 1472	n:3490000
KS ci ratio: 4.513994e-03	ci left: 1.772879e-01	ci right 1.780903e-01	k: 620134	n:3490000
TCERG1L   3490000 perm   6082 sec   (574 perm/sec)   p_kst 1.776888e-01   p_cons 4.217765e-04   p_joint 1.574499e-03

Joint ci ratio: 5.276769e-02	ci left: 1.532739e-03	ci right 1.616089e-03	k: 5509	n:3500000
Cons ci ratio: 1.020466e-01	ci left: 3.999194e-04	ci right 4.431998e-04	k: 1474	n:3500000
KS ci ratio: 4.507240e-03	ci left: 1.773079e-01	ci right 1.781092e-01	k: 621979	n:3500000
TCERG1L   3500000 perm   6116 sec   (572 perm/sec)   p_kst 1.777083e-01   p_cons 4.211429e-04   p_joint 1.574000e-03

Joint ci ratio: 5.298010e-02	ci left: 1.516002e-03	ci right 1.598784e-03	k: 5465	n:3510000
Cons ci ratio: 1.018396e-01	ci left: 4.004459e-04	ci right 4.436901e-04	k: 1480	n:3510000
KS ci ratio: 4.500622e-03	ci left: 1.773210e-01	ci right 1.781211e-01	k: 623800	n:3510000
TCERG1L   3510000 perm   6150 sec   (571 perm/sec)   p_kst 1.777208e-01   p_cons 4.216524e-04   p_joint 1.556980e-03

Joint ci ratio: 5.289789e-02	ci left: 1.516461e-03	ci right 1.599136e-03	k: 5482	n:3520000
Cons ci ratio: 1.018053e-01	ci left: 3.995851e-04	ci right 4.427210e-04	k: 1481	n:3520000
KS ci ratio: 4.494156e-03	ci left: 1.773261e-01	ci right 1.781250e-01	k: 625593	n:3520000
TCERG1L   3520000 perm   6183 sec   (569 perm/sec)   p_kst 1.777253e-01   p_cons 4.207386e-04   p_joint 1.557386e-03

Joint ci ratio: 5.279684e-02	ci left: 1.518035e-03	ci right 1.600633e-03	k: 5503	n:3530000
Cons ci ratio: 1.015657e-01	ci left: 4.003857e-04	ci right 4.435002e-04	k: 1488	n:3530000
KS ci ratio: 4.487578e-03	ci left: 1.773401e-01	ci right 1.781380e-01	k: 627418	n:3530000
TCERG1L   3530000 perm   6220 sec   (568 perm/sec)   p_kst 1.777388e-01   p_cons 4.215297e-04   p_joint 1.558924e-03

Joint ci ratio: 5.279696e-02	ci left: 1.513747e-03	ci right 1.596112e-03	k: 5503	n:3540000
Cons ci ratio: 1.014976e-01	ci left: 3.998053e-04	ci right 4.428267e-04	k: 1490	n:3540000
KS ci ratio: 4.481007e-03	ci left: 1.773555e-01	ci right 1.781523e-01	k: 629248	n:3540000
TCERG1L   3540000 perm   6253 sec   (566 perm/sec)   p_kst 1.777537e-01   p_cons 4.209040e-04   p_joint 1.554520e-03

Joint ci ratio: 5.043804e-02	ci left: 1.655743e-03	ci right 1.741692e-03	k: 6029	n:3550000
Cons ci ratio: 1.014296e-01	ci left: 3.992281e-04	ci right 4.421570e-04	k: 1492	n:3550000
KS ci ratio: 4.474901e-03	ci left: 1.773424e-01	ci right 1.781381e-01	k: 630977	n:3550000
TCERG1L   3550000 perm   6287 sec   (565 perm/sec)   p_kst 1.777400e-01   p_cons 4.202817e-04   p_joint 1.698310e-03

Joint ci ratio: 5.036709e-02	ci left: 1.655808e-03	ci right 1.741635e-03	k: 6046	n:3560000
Cons ci ratio: 1.011926e-01	ci left: 4.000232e-04	ci right 4.429310e-04	k: 1499	n:3560000
KS ci ratio: 4.468575e-03	ci left: 1.773454e-01	ci right 1.781399e-01	k: 632763	n:3560000
TCERG1L   3560000 perm   6321 sec   (563 perm/sec)   p_kst 1.777424e-01   p_cons 4.210674e-04   p_joint 1.698315e-03

Joint ci ratio: 5.030060e-02	ci left: 1.655595e-03	ci right 1.741295e-03	k: 6062	n:3570000
Cons ci ratio: 1.010916e-01	ci left: 3.997218e-04	ci right 4.425519e-04	k: 1502	n:3570000
KS ci ratio: 4.462395e-03	ci left: 1.773405e-01	ci right 1.781339e-01	k: 634521	n:3570000
TCERG1L   3570000 perm   6354 sec   (562 perm/sec)   p_kst 1.777370e-01   p_cons 4.207283e-04   p_joint 1.698039e-03

Joint ci ratio: 5.022609e-02	ci left: 1.655935e-03	ci right 1.741522e-03	k: 6080	n:3580000
Cons ci ratio: 1.010244e-01	ci left: 3.991497e-04	ci right 4.418885e-04	k: 1504	n:3580000
KS ci ratio: 4.456296e-03	ci left: 1.773321e-01	ci right 1.781243e-01	k: 636266	n:3580000
TCERG1L   3580000 perm   6388 sec   (560 perm/sec)   p_kst 1.777279e-01   p_cons 4.201117e-04   p_joint 1.698324e-03

Joint ci ratio: 5.015191e-02	ci left: 1.656273e-03	ci right 1.741748e-03	k: 6098	n:3590000
Cons ci ratio: 1.009239e-01	ci left: 3.988525e-04	ci right 4.415144e-04	k: 1507	n:3590000
KS ci ratio: 4.449989e-03	ci left: 1.773389e-01	ci right 1.781301e-01	k: 638066	n:3590000
TCERG1L   3590000 perm   6422 sec   (559 perm/sec)   p_kst 1.777343e-01   p_cons 4.197772e-04   p_joint 1.698607e-03

Joint ci ratio: 5.010679e-02	ci left: 1.654690e-03	ci right 1.740004e-03	k: 6109	n:3600000
Cons ci ratio: 1.008237e-01	ci left: 3.985568e-04	ci right 4.411423e-04	k: 1510	n:3600000
KS ci ratio: 4.443746e-03	ci left: 1.773433e-01	ci right 1.781334e-01	k: 639857	n:3600000
TCERG1L   3600000 perm   6457 sec   (558 perm/sec)   p_kst 1.777381e-01   p_cons 4.194444e-04   p_joint 1.696944e-03

Joint ci ratio: 5.015215e-02	ci left: 1.647097e-03	ci right 1.732099e-03	k: 6098	n:3610000
Cons ci ratio: 1.006905e-01	ci left: 3.985329e-04	ci right 4.410563e-04	k: 1514	n:3610000
KS ci ratio: 4.437829e-03	ci left: 1.773279e-01	ci right 1.781169e-01	k: 641577	n:3610000
TCERG1L   3610000 perm   6491 sec   (556 perm/sec)   p_kst 1.777222e-01   p_cons 4.193906e-04   p_joint 1.689197e-03

Joint ci ratio: 5.011113e-02	ci left: 1.645275e-03	ci right 1.730111e-03	k: 6108	n:3620000
Cons ci ratio: 1.006241e-01	ci left: 3.979706e-04	ci right 4.404043e-04	k: 1516	n:3620000
KS ci ratio: 4.431817e-03	ci left: 1.773204e-01	ci right 1.781083e-01	k: 643325	n:3620000
TCERG1L   3620000 perm   6525 sec   (555 perm/sec)   p_kst 1.777141e-01   p_cons 4.187845e-04   p_joint 1.687293e-03

Joint ci ratio: 5.006202e-02	ci left: 1.644007e-03	ci right 1.728692e-03	k: 6120	n:3630000
Cons ci ratio: 1.005248e-01	ci left: 3.976799e-04	ci right 4.400383e-04	k: 1519	n:3630000
KS ci ratio: 4.425943e-03	ci left: 1.773055e-01	ci right 1.780923e-01	k: 645046	n:3630000
TCERG1L   3630000 perm   6560 sec   (553 perm/sec)   p_kst 1.776986e-01   p_cons 4.184573e-04   p_joint 1.685950e-03

Joint ci ratio: 4.894541e-02	ci left: 1.716006e-03	ci right 1.802372e-03	k: 6402	n:3640000
Cons ci ratio: 1.003928e-01	ci left: 3.976587e-04	ci right 4.399559e-04	k: 1523	n:3640000
KS ci ratio: 4.420125e-03	ci left: 1.772885e-01	ci right 1.780741e-01	k: 646759	n:3640000
TCERG1L   3640000 perm   6596 sec   (552 perm/sec)   p_kst 1.776810e-01   p_cons 4.184066e-04   p_joint 1.758791e-03

Joint ci ratio: 4.902228e-02	ci left: 1.705892e-03	ci right 1.791888e-03	k: 6382	n:3650000
Cons ci ratio: 1.003599e-01	ci left: 3.968363e-04	ci right 4.390314e-04	k: 1524	n:3650000
KS ci ratio: 4.414044e-03	ci left: 1.772904e-01	ci right 1.780750e-01	k: 648541	n:3650000
TCERG1L   3650000 perm   6630 sec   (551 perm/sec)   p_kst 1.776825e-01   p_cons 4.175342e-04   p_joint 1.748493e-03

Joint ci ratio: 4.894947e-02	ci left: 1.706358e-03	ci right 1.792247e-03	k: 6401	n:3660000
Cons ci ratio: 1.000977e-01	ci left: 3.978830e-04	ci right 4.400724e-04	k: 1532	n:3660000
KS ci ratio: 4.407939e-03	ci left: 1.772957e-01	ci right 1.780792e-01	k: 650335	n:3660000
TCERG1L   3660000 perm   6666 sec   (549 perm/sec)   p_kst 1.776872e-01   p_cons 4.185792e-04   p_joint 1.748907e-03

Joint ci ratio: 4.887317e-02	ci left: 1.707092e-03	ci right 1.792880e-03	k: 6421	n:3670000
Cons ci ratio: 9.996733e-02	ci left: 3.978615e-04	ci right 4.399905e-04	k: 1536	n:3670000
KS ci ratio: 4.401818e-03	ci left: 1.773036e-01	ci right 1.780860e-01	k: 652139	n:3670000
TCERG1L   3670000 perm   6701 sec   (548 perm/sec)   p_kst 1.776946e-01   p_cons 4.185286e-04   p_joint 1.749591e-03

Outputting figure to mutsig2_images.part000000000172/TCERG1L.6_1809_3670000_0.17769_0.00041853_0.0017496.png
                gene_name: TCERG1L
               theta_stop: 0.100 
                    nperm: 3670000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.00042 
      ci_cons_bounds_left: 0.00040 
     ci_cons_bounds_right: 0.00044 
                  p_joint: 0.0017 
     ci_joint_bounds_left: 0.0017 
    ci_joint_bounds_right: 0.0018 

Current progress: 30 percent done.
TCF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.254388e-01	ci left: 1.197339e-02	ci right 1.671572e-02	k: 142	n:10000
Cons ci ratio: 1.147477e-01	ci left: 9.847268e-02	ci right 1.105588e-01	k: 1044	n:10000
KS ci ratio: 2.366646e-01	ci left: 2.353468e-02	ci right 2.994503e-02	k: 266	n:10000
TCF7   10000 perm   2 sec   (5643 perm/sec)   p_kst 2.660000e-02   p_cons 1.044000e-01   p_joint 1.420000e-02

Joint ci ratio: 1.932871e-01	ci left: 1.819999e-02	ci right 2.214125e-02	k: 402	n:20000
Cons ci ratio: 7.848243e-02	ci left: 1.065308e-01	ci right 1.152827e-01	k: 2217	n:20000
KS ci ratio: 1.694827e-01	ci left: 2.383866e-02	ci right 2.830057e-02	k: 520	n:20000
TCF7   20000 perm   4 sec   (4674 perm/sec)   p_kst 2.600000e-02   p_cons 1.108500e-01   p_joint 2.010000e-02

Joint ci ratio: 2.050674e-01	ci left: 1.079864e-02	ci right 1.329720e-02	k: 360	n:30000
Cons ci ratio: 6.352404e-02	ci left: 1.090440e-01	ci right 1.162312e-01	k: 3378	n:30000
KS ci ratio: 1.400950e-01	ci left: 2.364901e-02	ci right 2.724369e-02	k: 762	n:30000
TCF7   30000 perm   7 sec   (4413 perm/sec)   p_kst 2.540000e-02   p_cons 1.126000e-01   p_joint 1.200000e-02

Joint ci ratio: 1.355647e-01	ci left: 1.908539e-02	ci right 2.188483e-02	k: 818	n:40000
Cons ci ratio: 5.449247e-02	ci left: 1.114198e-01	ci right 1.176862e-01	k: 4581	n:40000
KS ci ratio: 1.225262e-01	ci left: 2.341930e-02	ci right 2.650019e-02	k: 997	n:40000
TCF7   40000 perm   9 sec   (4275 perm/sec)   p_kst 2.492500e-02   p_cons 1.145250e-01   p_joint 2.045000e-02

Joint ci ratio: 1.315073e-01	ci left: 1.631068e-02	ci right 1.862583e-02	k: 872	n:50000
Cons ci ratio: 4.883840e-02	ci left: 1.113455e-01	ci right 1.169394e-01	k: 5706	n:50000
KS ci ratio: 1.086787e-01	ci left: 2.398011e-02	ci right 2.675537e-02	k: 1267	n:50000
TCF7   50000 perm   12 sec   (4193 perm/sec)   p_kst 2.534000e-02   p_cons 1.141200e-01   p_joint 1.744000e-02

Joint ci ratio: 1.294630e-01	ci left: 1.407484e-02	ci right 1.603914e-02	k: 902	n:60000
Cons ci ratio: 4.475825e-02	ci left: 1.108073e-01	ci right 1.158969e-01	k: 6800	n:60000
KS ci ratio: 9.933041e-02	ci left: 2.404189e-02	ci right 2.657098e-02	k: 1517	n:60000
TCF7   60000 perm   15 sec   (4076 perm/sec)   p_kst 2.528333e-02   p_cons 1.133333e-01   p_joint 1.503333e-02

Joint ci ratio: 1.061364e-01	ci left: 1.809885e-02	ci right 2.014129e-02	k: 1337	n:70000
Cons ci ratio: 4.145138e-02	ci left: 1.109326e-01	ci right 1.156424e-01	k: 7929	n:70000
KS ci ratio: 9.140770e-02	ci left: 2.442858e-02	ci right 2.678240e-02	k: 1791	n:70000
TCF7   70000 perm   17 sec   (4000 perm/sec)   p_kst 2.558571e-02   p_cons 1.132714e-01   p_joint 1.910000e-02

Joint ci ratio: 1.030611e-01	ci left: 1.684629e-02	ci right 1.868892e-02	k: 1420	n:80000
Cons ci ratio: 3.867291e-02	ci left: 1.116072e-01	ci right 1.160209e-01	k: 9104	n:80000
KS ci ratio: 8.578397e-02	ci left: 2.434520e-02	ci right 2.653940e-02	k: 2034	n:80000
TCF7   80000 perm   21 sec   (3884 perm/sec)   p_kst 2.542500e-02   p_cons 1.138000e-01   p_joint 1.775000e-02

Joint ci ratio: 9.095192e-02	ci left: 1.930168e-02	ci right 2.115165e-02	k: 1819	n:90000
Cons ci ratio: 3.648355e-02	ci left: 1.116109e-01	ci right 1.157696e-01	k: 10231	n:90000
KS ci ratio: 8.095736e-02	ci left: 2.436006e-02	ci right 2.642624e-02	k: 2284	n:90000
TCF7   90000 perm   24 sec   (3816 perm/sec)   p_kst 2.537778e-02   p_cons 1.136778e-01   p_joint 2.021111e-02

Outputting figure to mutsig2_images.part000000000172/TCF7.6_1364_90000_0.025378_0.11368_0.020211.png
                gene_name: TCF7
               theta_stop: 0.091 
                    nperm: 90000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 32 percent done.
TBC1D23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.249902e-02	ci left: 7.436154e-01	ci right 7.606374e-01	k: 7522	n:10000
Cons ci ratio: 6.489987e-02	ci left: 2.585460e-01	ci right 2.759898e-01	k: 2672	n:10000
KS ci ratio: 2.522805e-02	ci left: 6.980709e-01	ci right 7.160083e-01	k: 7071	n:10000
TBC1D23   10000 perm   2 sec   (4736 perm/sec)   p_kst 7.071000e-01   p_cons 2.672000e-01   p_joint 7.522000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D23.5_2127_10000_0.7071_0.2672_0.7522.png
                gene_name: TBC1D23
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 34 percent done.
TBC1D8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.284991e-02	ci left: 5.776768e-01	ci right 5.970723e-01	k: 5874	n:10000
Cons ci ratio: 6.062823e-02	ci left: 2.857752e-01	ci right 3.037445e-01	k: 2947	n:10000
KS ci ratio: 2.150889e-02	ci left: 7.602067e-01	ci right 7.768366e-01	k: 7686	n:10000
TBC1D8   10000 perm   2 sec   (4303 perm/sec)   p_kst 7.686000e-01   p_cons 2.947000e-01   p_joint 5.874000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D8.5_3503_10000_0.7686_0.2947_0.5874.png
                gene_name: TBC1D8
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 36 percent done.
TBCCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.069749e-02	ci left: 7.737760e-01	ci right 7.900594e-01	k: 7820	n:10000
KS ci ratio: 1.254905e-02	ci left: 9.012412e-01	ci right 9.127205e-01	k: 9071	n:10000
TBCCD1   10000 perm   2 sec   (5715 perm/sec)   p_kst 9.071000e-01   p_cons 7.820000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TBCCD1.5_1698_10000_0.9071_0.782_1.png
                gene_name: TBCCD1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
TBX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.571844e-02	ci left: 4.138887e-01	ci right 4.333558e-01	k: 4236	n:10000
Cons ci ratio: 2.719853e-02	ci left: 6.657201e-01	ci right 6.841779e-01	k: 6750	n:10000
KS ci ratio: 5.627496e-02	ci left: 3.174100e-01	ci right 3.358911e-01	k: 3266	n:10000
TBX5   10000 perm   2 sec   (5347 perm/sec)   p_kst 3.266000e-01   p_cons 6.750000e-01   p_joint 4.236000e-01

Outputting figure to mutsig2_images.part000000000172/TBX5.5_1657_10000_0.3266_0.675_0.4236.png
                gene_name: TBX5
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 40 percent done.
TBXAS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.333015e-02	ci left: 8.902613e-01	ci right 9.023067e-01	k: 8964	n:10000
KS ci ratio: 1.938006e-02	ci left: 7.956756e-01	ci right 8.113472e-01	k: 8036	n:10000
TBXAS1   10000 perm   2 sec   (5237 perm/sec)   p_kst 8.036000e-01   p_cons 8.964000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TBXAS1.5_1799_10000_0.8036_0.8964_1.png
                gene_name: TBXAS1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
TCEANC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.018103e-01	ci left: 1.224889e-01	ci right 1.357280e-01	k: 1290	n:10000
Cons ci ratio: 2.980685e-02	ci left: 6.240687e-01	ci right 6.430535e-01	k: 6336	n:10000
KS ci ratio: 1.343944e-01	ci left: 7.310807e-02	ci right 8.373906e-02	k: 783	n:10000
TCEANC   10000 perm   2 sec   (5274 perm/sec)   p_kst 7.830000e-02   p_cons 6.336000e-01   p_joint 1.290000e-01

Joint ci ratio: 7.022260e-02	ci left: 1.300461e-01	ci right 1.395604e-01	k: 2695	n:20000
Cons ci ratio: 2.119350e-02	ci left: 6.243191e-01	ci right 6.377428e-01	k: 12621	n:20000
KS ci ratio: 9.579764e-02	ci left: 7.353756e-02	ci right 8.098590e-02	k: 1544	n:20000
TCEANC   20000 perm   4 sec   (4509 perm/sec)   p_kst 7.720000e-02   p_cons 6.310500e-01   p_joint 1.347500e-01

Outputting figure to mutsig2_images.part000000000172/TCEANC.5_1154_20000_0.0772_0.63105_0.13475.png
                gene_name: TCEANC
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.077 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.081 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 43 percent done.
TCHP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.273034e-01	ci left: 8.106153e-02	ci right 9.218067e-02	k: 865	n:10000
Cons ci ratio: 2.413489e-01	ci left: 2.259324e-02	ci right 2.888717e-02	k: 256	n:10000
KS ci ratio: 2.101880e-02	ci left: 7.684076e-01	ci right 7.848309e-01	k: 7767	n:10000
TCHP   10000 perm   2 sec   (5533 perm/sec)   p_kst 7.767000e-01   p_cons 2.560000e-02   p_joint 8.650000e-02

Joint ci ratio: 6.933349e-02	ci left: 1.330016e-01	ci right 1.426040e-01	k: 2755	n:20000
Cons ci ratio: 1.694827e-01	ci left: 2.383866e-02	ci right 2.830057e-02	k: 520	n:20000
KS ci ratio: 1.578558e-02	ci left: 7.490784e-01	ci right 7.610474e-01	k: 15102	n:20000
TCHP   20000 perm   4 sec   (4720 perm/sec)   p_kst 7.551000e-01   p_cons 2.600000e-02   p_joint 1.377500e-01

Joint ci ratio: 5.507510e-02	ci left: 1.404734e-01	ci right 1.484623e-01	k: 4333	n:30000
Cons ci ratio: 1.387023e-01	ci left: 2.413198e-02	ci right 2.776061e-02	k: 777	n:30000
KS ci ratio: 1.297369e-02	ci left: 7.477433e-01	ci right 7.575410e-01	k: 22580	n:30000
TCHP   30000 perm   7 sec   (4415 perm/sec)   p_kst 7.526667e-01   p_cons 2.590000e-02   p_joint 1.444333e-01

Joint ci ratio: 5.029873e-02	ci left: 1.284993e-01	ci right 1.351543e-01	k: 5272	n:40000
Cons ci ratio: 1.201995e-01	ci left: 2.434115e-02	ci right 2.747819e-02	k: 1035	n:40000
KS ci ratio: 1.127981e-02	ci left: 7.469327e-01	ci right 7.554308e-01	k: 30048	n:40000
TCHP   40000 perm   9 sec   (4255 perm/sec)   p_kst 7.512000e-01   p_cons 2.587500e-02   p_joint 1.318000e-01

Joint ci ratio: 4.916477e-02	ci left: 1.100199e-01	ci right 1.155852e-01	k: 5639	n:50000
Cons ci ratio: 1.061298e-01	ci left: 2.514866e-02	ci right 2.798666e-02	k: 1327	n:50000
KS ci ratio: 1.011327e-02	ci left: 7.464816e-01	ci right 7.540893e-01	k: 37515	n:50000
TCHP   50000 perm   12 sec   (4096 perm/sec)   p_kst 7.503000e-01   p_cons 2.654000e-02   p_joint 1.127800e-01

Joint ci ratio: 4.025064e-02	ci left: 1.337457e-01	ci right 1.392562e-01	k: 8189	n:60000
Cons ci ratio: 9.677700e-02	ci left: 2.532707e-02	ci right 2.791899e-02	k: 1596	n:60000
KS ci ratio: 9.225542e-03	ci left: 7.470841e-01	ci right 7.540250e-01	k: 45034	n:60000
TCHP   60000 perm   15 sec   (3996 perm/sec)   p_kst 7.505667e-01   p_cons 2.660000e-02   p_joint 1.364833e-01

Outputting figure to mutsig2_images.part000000000172/TCHP.5_1545_60000_0.75057_0.0266_0.13648.png
                gene_name: TCHP
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 45 percent done.
TBC1D28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.549612e-02	ci left: 5.395849e-01	ci right 5.591863e-01	k: 5494	n:10000
Cons ci ratio: 1.654028e-02	ci left: 8.417290e-01	ci right 8.558672e-01	k: 8489	n:10000
KS ci ratio: 7.745522e-02	ci left: 1.959420e-01	ci right 2.118309e-01	k: 2038	n:10000
TBC1D28   10000 perm   2 sec   (6287 perm/sec)   p_kst 2.038000e-01   p_cons 8.489000e-01   p_joint 5.494000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D28.4_661_10000_0.2038_0.8489_0.5494.png
                gene_name: TBC1D28
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 47 percent done.
TBC1D2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.406905e-02	ci left: 7.173453e-01	ci right 7.349227e-01	k: 7262	n:10000
Cons ci ratio: 4.375241e-02	ci left: 4.354264e-01	ci right 4.550056e-01	k: 4452	n:10000
KS ci ratio: 1.574622e-02	ci left: 8.541665e-01	ci right 8.678225e-01	k: 8611	n:10000
TBC1D2B   10000 perm   2 sec   (5715 perm/sec)   p_kst 8.611000e-01   p_cons 4.452000e-01   p_joint 7.262000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D2B.4_2944_10000_0.8611_0.4452_0.7262.png
                gene_name: TBC1D2B
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 49 percent done.
TBC1D5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.200305e-02	ci left: 1.783175e-01	ci right 1.936658e-01	k: 1859	n:10000
Cons ci ratio: 7.302283e-02	ci left: 2.154651e-01	ci right 2.318962e-01	k: 2236	n:10000
KS ci ratio: 1.222691e-01	ci left: 8.747398e-02	ci right 9.896426e-02	k: 931	n:10000
TBC1D5   10000 perm   2 sec   (5030 perm/sec)   p_kst 9.310000e-02   p_cons 2.236000e-01   p_joint 1.859000e-01

Joint ci ratio: 7.161038e-02	ci left: 1.256143e-01	ci right 1.349934e-01	k: 2605	n:20000
Cons ci ratio: 5.113517e-02	ci left: 2.212591e-01	ci right 2.329203e-01	k: 4541	n:20000
KS ci ratio: 8.892717e-02	ci left: 8.459877e-02	ci right 9.252133e-02	k: 1770	n:20000
TBC1D5   20000 perm   5 sec   (4436 perm/sec)   p_kst 8.850000e-02   p_cons 2.270500e-01   p_joint 1.302500e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D5.4_2538_20000_0.0885_0.22705_0.13025.png
                gene_name: TBC1D5
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 51 percent done.
TBC1D8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.452937e-02	ci left: 7.096736e-01	ci right 7.273989e-01	k: 7186	n:10000
Cons ci ratio: 2.483886e-02	ci left: 7.045272e-01	ci right 7.223483e-01	k: 7135	n:10000
KS ci ratio: 4.217566e-02	ci left: 4.535883e-01	ci right 4.732330e-01	k: 4634	n:10000
TBC1D8B   10000 perm   2 sec   (4818 perm/sec)   p_kst 4.634000e-01   p_cons 7.135000e-01   p_joint 7.186000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D8B.4_3513_10000_0.4634_0.7135_0.7186.png
                gene_name: TBC1D8B
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 53 percent done.
TBX15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.114718e-02	ci left: 4.658700e-01	ci right 4.855441e-01	k: 4757	n:10000
Cons ci ratio: 4.828189e-02	ci left: 3.875906e-01	ci right 4.068693e-01	k: 3972	n:10000
KS ci ratio: 4.638942e-02	ci left: 4.068133e-01	ci right 4.262354e-01	k: 4165	n:10000
TBX15   10000 perm   2 sec   (6187 perm/sec)   p_kst 4.165000e-01   p_cons 3.972000e-01   p_joint 4.757000e-01

Outputting figure to mutsig2_images.part000000000172/TBX15.4_1519_10000_0.4165_0.3972_0.4757.png
                gene_name: TBX15
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 55 percent done.
TBX22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.777991e-02	ci left: 8.218818e-01	ci right 8.367259e-01	k: 8294	n:10000
KS ci ratio: 2.549010e-02	ci left: 6.937343e-01	ci right 7.117474e-01	k: 7028	n:10000
TBX22   10000 perm   2 sec   (5320 perm/sec)   p_kst 7.028000e-01   p_cons 8.294000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TBX22.4_1595_10000_0.7028_0.8294_1.png
                gene_name: TBX22
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
TBX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.879380e-02	ci left: 1.558095e-01	ci right 1.703873e-01	k: 1630	n:10000
Cons ci ratio: 1.137775e-01	ci left: 1.000319e-01	ci right 1.121987e-01	k: 1060	n:10000
KS ci ratio: 6.857181e-02	ci left: 2.377814e-01	ci right 2.547666e-01	k: 2462	n:10000
TBX3   10000 perm   2 sec   (5110 perm/sec)   p_kst 2.462000e-01   p_cons 1.060000e-01   p_joint 1.630000e-01

Joint ci ratio: 5.259039e-02	ci left: 2.116503e-01	ci right 2.231319e-01	k: 4347	n:20000
Cons ci ratio: 8.168708e-02	ci left: 9.901670e-02	ci right 1.074990e-01	k: 2064	n:20000
KS ci ratio: 4.931161e-02	ci left: 2.341437e-01	ci right 2.460319e-01	k: 4801	n:20000
TBX3   20000 perm   4 sec   (4503 perm/sec)   p_kst 2.400500e-01   p_cons 1.032000e-01   p_joint 2.173500e-01

Outputting figure to mutsig2_images.part000000000172/TBX3.4_2264_20000_0.24005_0.1032_0.21735.png
                gene_name: TBX3
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 58 percent done.
TBX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.570447e-02	ci left: 5.366803e-01	ci right 5.562926e-01	k: 5465	n:10000
Cons ci ratio: 5.205220e-02	ci left: 3.523733e-01	ci right 3.713072e-01	k: 3618	n:10000
KS ci ratio: 3.950888e-02	ci left: 4.861529e-01	ci right 5.058495e-01	k: 4960	n:10000
TBX4   10000 perm   2 sec   (5696 perm/sec)   p_kst 4.960000e-01   p_cons 3.618000e-01   p_joint 5.465000e-01

Outputting figure to mutsig2_images.part000000000172/TBX4.4_1670_10000_0.496_0.3618_0.5465.png
                gene_name: TBX4
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 60 percent done.
TC2N
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.899868e-02	ci left: 4.926508e-01	ci right 5.123478e-01	k: 5025	n:10000
Cons ci ratio: 9.499402e-02	ci left: 1.385451e-01	ci right 1.524621e-01	k: 1454	n:10000
KS ci ratio: 3.549612e-02	ci left: 5.395849e-01	ci right 5.591863e-01	k: 5494	n:10000
TC2N   10000 perm   2 sec   (5482 perm/sec)   p_kst 5.494000e-01   p_cons 1.454000e-01   p_joint 5.025000e-01

Outputting figure to mutsig2_images.part000000000172/TC2N.4_1517_10000_0.5494_0.1454_0.5025.png
                gene_name: TC2N
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 62 percent done.
TCEA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.542450e-02	ci left: 5.405866e-01	ci right 5.601840e-01	k: 5504	n:10000
Cons ci ratio: 7.389568e-02	ci left: 2.114201e-01	ci right 2.277435e-01	k: 2195	n:10000
KS ci ratio: 4.346137e-02	ci left: 4.387185e-01	ci right 4.583115e-01	k: 4485	n:10000
TCEA1   10000 perm   2 sec   (5875 perm/sec)   p_kst 4.485000e-01   p_cons 2.195000e-01   p_joint 5.504000e-01

Outputting figure to mutsig2_images.part000000000172/TCEA1.4_946_10000_0.4485_0.2195_0.5504.png
                gene_name: TCEA1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 64 percent done.
TCEB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.355219e-02	ci left: 2.667599e-01	ci right 2.843710e-01	k: 2755	n:10000
Cons ci ratio: 1.324787e-01	ci left: 7.514340e-02	ci right 8.590246e-02	k: 804	n:10000
KS ci ratio: 5.645451e-02	ci left: 3.160206e-01	ci right 3.344813e-01	k: 3252	n:10000
TCEB3   10000 perm   2 sec   (5002 perm/sec)   p_kst 3.252000e-01   p_cons 8.040000e-02   p_joint 2.755000e-01

Joint ci ratio: 6.881312e-02	ci left: 1.347752e-01	ci right 1.444298e-01	k: 2791	n:20000
Cons ci ratio: 9.682007e-02	ci left: 7.207091e-02	ci right 7.945299e-02	k: 1514	n:20000
KS ci ratio: 3.858916e-02	ci left: 3.337321e-01	ci right 3.469144e-01	k: 6806	n:20000
TCEB3   20000 perm   5 sec   (4362 perm/sec)   p_kst 3.403000e-01   p_cons 7.570000e-02   p_joint 1.395500e-01

Outputting figure to mutsig2_images.part000000000172/TCEB3.4_2441_20000_0.3403_0.0757_0.13955.png
                gene_name: TCEB3
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.079 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 66 percent done.
TCF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.440970e-02	ci left: 3.323022e-01	ci right 3.509901e-01	k: 3416	n:10000
Cons ci ratio: 1.354280e-01	ci left: 7.204238e-02	ci right 8.260541e-02	k: 772	n:10000
KS ci ratio: 5.168237e-02	ci left: 3.556540e-01	ci right 3.746246e-01	k: 3651	n:10000
TCF4   10000 perm   2 sec   (4816 perm/sec)   p_kst 3.651000e-01   p_cons 7.720000e-02   p_joint 3.416000e-01

Joint ci ratio: 4.788829e-02	ci left: 2.449032e-01	ci right 2.569693e-01	k: 5018	n:20000
Cons ci ratio: 9.573051e-02	ci left: 7.363535e-02	ci right 8.108808e-02	k: 1546	n:20000
KS ci ratio: 3.614623e-02	ci left: 3.635521e-01	ci right 3.769856e-01	k: 7405	n:20000
TCF4   20000 perm   5 sec   (4114 perm/sec)   p_kst 3.702500e-01   p_cons 7.730000e-02   p_joint 2.509000e-01

Outputting figure to mutsig2_images.part000000000172/TCF4.4_2088_20000_0.37025_0.0773_0.2509.png
                gene_name: TCF4
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 68 percent done.
TBC1D24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.634093e-02	ci left: 6.797224e-01	ci right 6.979674e-01	k: 6889	n:10000
Cons ci ratio: 2.280349e-01	ci left: 2.542102e-02	ci right 3.205731e-02	k: 286	n:10000
KS ci ratio: 2.777680e-02	ci left: 6.563567e-01	ci right 6.749467e-01	k: 6657	n:10000
TBC1D24   10000 perm   2 sec   (5886 perm/sec)   p_kst 6.657000e-01   p_cons 2.860000e-02   p_joint 6.889000e-01

Joint ci ratio: 3.778659e-02	ci left: 3.431878e-01	ci right 3.564559e-01	k: 6996	n:20000
Cons ci ratio: 1.599623e-01	ci left: 2.681414e-02	ci right 3.152408e-02	k: 582	n:20000
KS ci ratio: 1.964190e-02	ci left: 6.591133e-01	ci right 6.722385e-01	k: 13314	n:20000
TBC1D24   20000 perm   4 sec   (4888 perm/sec)   p_kst 6.657000e-01   p_cons 2.910000e-02   p_joint 3.498000e-01

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 1.299606e-01	ci left: 2.751748e-02	ci right 3.137436e-02	k: 882	n:30000
KS ci ratio: 1.607860e-02	ci left: 6.591916e-01	ci right 6.699099e-01	k: 19937	n:30000
TBC1D24   30000 perm   7 sec   (4599 perm/sec)   p_kst 6.645667e-01   p_cons 2.940000e-02   p_joint 1

Joint ci ratio: 1.440114e-02	ci left: 6.447007e-01	ci right 6.540776e-01	k: 25976	n:40000
Cons ci ratio: 1.123204e-01	ci left: 2.788788e-02	ci right 3.123088e-02	k: 1181	n:40000
KS ci ratio: 1.392665e-02	ci left: 6.598486e-01	ci right 6.691276e-01	k: 26580	n:40000
TBC1D24   40000 perm   9 sec   (4448 perm/sec)   p_kst 6.645000e-01   p_cons 2.952500e-02   p_joint 6.494000e-01

Joint ci ratio: 1.050365e-02	ci left: 7.319519e-01	ci right 7.397007e-01	k: 36792	n:50000
Cons ci ratio: 1.008325e-01	ci left: 2.785867e-02	ci right 3.083631e-02	k: 1466	n:50000
KS ci ratio: 1.249052e-02	ci left: 6.591183e-01	ci right 6.674228e-01	k: 33164	n:50000
TBC1D24   50000 perm   11 sec   (4378 perm/sec)   p_kst 6.632800e-01   p_cons 2.932000e-02   p_joint 7.358400e-01

Joint ci ratio: 6.533116e-05	ci left: 9.999385e-01	ci right 1	k: 60000	n:60000
Cons ci ratio: 9.081620e-02	ci left: 2.874727e-02	ci right 3.149843e-02	k: 1806	n:60000
KS ci ratio: 1.140770e-02	ci left: 6.592685e-01	ci right 6.668491e-01	k: 39784	n:60000
TBC1D24   60000 perm   14 sec   (4306 perm/sec)   p_kst 6.630667e-01   p_cons 3.010000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TBC1D24.3_1686_60000_0.66307_0.0301_1.png
                gene_name: TBC1D24
               theta_stop: 0.091 
                    nperm: 60000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.031 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
TBCD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.013009e-02	ci left: 4.783575e-01	ci right 4.980493e-01	k: 4882	n:10000
Cons ci ratio: 3.133409e-02	ci left: 6.004598e-01	ci right 6.196761e-01	k: 6101	n:10000
KS ci ratio: 9.854893e-02	ci left: 1.298276e-01	ci right 1.433848e-01	k: 1365	n:10000
TBCD   10000 perm   2 sec   (5018 perm/sec)   p_kst 1.365000e-01   p_cons 6.101000e-01   p_joint 4.882000e-01

Outputting figure to mutsig2_images.part000000000172/TBCD.3_3735_10000_0.1365_0.6101_0.4882.png
                gene_name: TBCD
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 72 percent done.
TBCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.402527e-02	ci left: 2.108283e-01	ci right 2.271357e-01	k: 2189	n:10000
Cons ci ratio: 1.348616e-01	ci left: 7.262363e-02	ci right 8.322381e-02	k: 778	n:10000
KS ci ratio: 6.224134e-02	ci left: 2.750767e-01	ci right 2.928493e-01	k: 2839	n:10000
TBCE   10000 perm   2 sec   (5932 perm/sec)   p_kst 2.839000e-01   p_cons 7.780000e-02   p_joint 2.189000e-01

Joint ci ratio: 5.358372e-02	ci left: 2.054121e-01	ci right 2.167720e-01	k: 4221	n:20000
Cons ci ratio: 9.895639e-02	ci left: 6.913890e-02	ci right 7.638590e-02	k: 1454	n:20000
KS ci ratio: 4.410909e-02	ci left: 2.768137e-01	ci right 2.893495e-01	k: 5661	n:20000
TBCE   20000 perm   4 sec   (5062 perm/sec)   p_kst 2.830500e-01   p_cons 7.270000e-02   p_joint 2.110500e-01

Outputting figure to mutsig2_images.part000000000172/TBCE.3_1648_20000_0.28305_0.0727_0.21105.png
                gene_name: TBCE
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 74 percent done.
TBL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.126117e-02	ci left: 2.815149e-01	ci right 2.994073e-01	k: 2904	n:10000
Cons ci ratio: 7.180414e-02	ci left: 2.212878e-01	ci right 2.378700e-01	k: 2295	n:10000
KS ci ratio: 6.222604e-02	ci left: 2.751757e-01	ci right 2.929502e-01	k: 2840	n:10000
TBL2   10000 perm   2 sec   (5659 perm/sec)   p_kst 2.840000e-01   p_cons 2.295000e-01   p_joint 2.904000e-01

Outputting figure to mutsig2_images.part000000000172/TBL2.3_1372_10000_0.284_0.2295_0.2904.png
                gene_name: TBL2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 75 percent done.
TBR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.956251e-01	ci left: 3.481398e-02	ci right 4.245779e-02	k: 385	n:10000
Cons ci ratio: 3.206323e-02	ci left: 5.894169e-01	ci right 6.087254e-01	k: 5991	n:10000
KS ci ratio: 2.478600e-01	ci left: 2.137124e-02	ci right 2.751008e-02	k: 243	n:10000
TBR1   10000 perm   2 sec   (4949 perm/sec)   p_kst 2.430000e-02   p_cons 5.991000e-01   p_joint 3.850000e-02

Joint ci ratio: 1.026566e-01	ci left: 6.445142e-02	ci right 7.147482e-02	k: 1358	n:20000
Cons ci ratio: 2.288872e-02	ci left: 5.877072e-01	ci right 6.013653e-01	k: 11891	n:20000
KS ci ratio: 1.769473e-01	ci left: 2.182763e-02	ci right 2.611230e-02	k: 478	n:20000
TBR1   20000 perm   5 sec   (4431 perm/sec)   p_kst 2.390000e-02   p_cons 5.945500e-01   p_joint 6.790000e-02

Joint ci ratio: 9.786246e-02	ci left: 4.827697e-02	ci right 5.327714e-02	k: 1522	n:30000
Cons ci ratio: 1.867663e-02	ci left: 5.892859e-01	ci right 6.004291e-01	k: 17846	n:30000
KS ci ratio: 1.433074e-01	ci left: 2.258711e-02	ci right 2.610583e-02	k: 729	n:30000
TBR1   30000 perm   7 sec   (4161 perm/sec)   p_kst 2.430000e-02   p_cons 5.948667e-01   p_joint 5.073333e-02

Joint ci ratio: 7.060345e-02	ci left: 6.901826e-02	ci right 7.409415e-02	k: 2861	n:40000
Cons ci ratio: 1.615921e-02	ci left: 5.904957e-01	ci right 6.001405e-01	k: 23813	n:40000
KS ci ratio: 1.225892e-01	ci left: 2.339505e-02	ci right 2.647444e-02	k: 996	n:40000
TBR1   40000 perm   10 sec   (4020 perm/sec)   p_kst 2.490000e-02   p_cons 5.953250e-01   p_joint 7.152500e-02

Joint ci ratio: 5.664057e-02	ci left: 8.493853e-02	ci right 8.990950e-02	k: 4370	n:50000
Cons ci ratio: 1.446007e-02	ci left: 5.907820e-01	ci right 5.994070e-01	k: 29755	n:50000
KS ci ratio: 1.100670e-01	ci left: 2.337667e-02	ci right 2.611889e-02	k: 1236	n:50000
TBR1   50000 perm   13 sec   (3947 perm/sec)   p_kst 2.472000e-02   p_cons 5.951000e-01   p_joint 8.740000e-02

Joint ci ratio: 5.739607e-02	ci left: 7.005922e-02	ci right 7.421561e-02	k: 4327	n:60000
Cons ci ratio: 1.321621e-02	ci left: 5.905752e-01	ci right 5.984490e-01	k: 35671	n:60000
KS ci ratio: 1.006302e-01	ci left: 2.342402e-02	ci right 2.592225e-02	k: 1479	n:60000
TBR1   60000 perm   16 sec   (3867 perm/sec)   p_kst 2.465000e-02   p_cons 5.945167e-01   p_joint 7.211667e-02

Joint ci ratio: 5.834885e-02	ci left: 5.880132e-02	ci right 6.234950e-02	k: 4239	n:70000
Cons ci ratio: 1.226422e-02	ci left: 5.897503e-01	ci right 5.970420e-01	k: 41538	n:70000
KS ci ratio: 9.263520e-02	ci left: 2.378620e-02	ci right 2.611055e-02	k: 1745	n:70000
TBR1   70000 perm   18 sec   (3789 perm/sec)   p_kst 2.492857e-02   p_cons 5.934000e-01   p_joint 6.055714e-02

Outputting figure to mutsig2_images.part000000000172/TBR1.3_2073_70000_0.024929_0.5934_0.060557.png
                gene_name: TBR1
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.062 

Current progress: 77 percent done.
TBX19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.852541e-03	ci left: 9.824212e-01	ci right 9.872903e-01	k: 9850	n:10000
Cons ci ratio: 3.701324e-02	ci left: 5.187591e-01	ci right 5.384242e-01	k: 5286	n:10000
KS ci ratio: 1.842321e-02	ci left: 8.114128e-01	ci right 8.266008e-01	k: 8191	n:10000
TBX19   10000 perm   2 sec   (6260 perm/sec)   p_kst 8.191000e-01   p_cons 5.286000e-01   p_joint 9.850000e-01

Outputting figure to mutsig2_images.part000000000172/TBX19.3_1379_10000_0.8191_0.5286_0.985.png
                gene_name: TBX19
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 79 percent done.
TCF7L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.400983e-01	ci left: 6.749259e-02	ci right 7.775805e-02	k: 725	n:10000
Cons ci ratio: 1.853727e-01	ci left: 3.882106e-02	ci right 4.684801e-02	k: 427	n:10000
KS ci ratio: 1.044753e-01	ci left: 1.169164e-01	ci right 1.299039e-01	k: 1233	n:10000
TCF7L1   10000 perm   2 sec   (5377 perm/sec)   p_kst 1.233000e-01   p_cons 4.270000e-02   p_joint 7.250000e-02

Joint ci ratio: 1.464120e-01	ci left: 3.206168e-02	ci right 3.717478e-02	k: 691	n:20000
Cons ci ratio: 1.214604e-01	ci left: 4.648596e-02	ci right 5.254587e-02	k: 989	n:20000
KS ci ratio: 7.375725e-02	ci left: 1.191670e-01	ci right 1.283427e-01	k: 2474	n:20000
TCF7L1   20000 perm   4 sec   (4592 perm/sec)   p_kst 1.237000e-01   p_cons 4.945000e-02   p_joint 3.455000e-02

Joint ci ratio: 1.284692e-01	ci left: 2.816320e-02	ci right 3.206184e-02	k: 902	n:30000
Cons ci ratio: 9.861510e-02	ci left: 4.756077e-02	ci right 5.252683e-02	k: 1500	n:30000
KS ci ratio: 6.051625e-02	ci left: 1.189744e-01	ci right 1.264321e-01	k: 3680	n:30000
TCF7L1   30000 perm   7 sec   (4491 perm/sec)   p_kst 1.226667e-01   p_cons 5.000000e-02   p_joint 3.006667e-02

Joint ci ratio: 1.162291e-01	ci left: 2.604071e-02	ci right 2.927835e-02	k: 1105	n:40000
Cons ci ratio: 8.561386e-02	ci left: 4.766398e-02	ci right 5.195167e-02	k: 1991	n:40000
KS ci ratio: 5.265363e-02	ci left: 1.184864e-01	ci right 1.249186e-01	k: 4867	n:40000
TCF7L1   40000 perm   9 sec   (4422 perm/sec)   p_kst 1.216750e-01   p_cons 4.977500e-02   p_joint 2.762500e-02

Joint ci ratio: 8.770232e-02	ci left: 3.673252e-02	ci right 4.012134e-02	k: 1920	n:50000
Cons ci ratio: 7.659172e-02	ci left: 4.787020e-02	ci right 5.170229e-02	k: 2488	n:50000
KS ci ratio: 4.741486e-02	ci left: 1.174013e-01	ci right 1.231229e-01	k: 6012	n:50000
TCF7L1   50000 perm   11 sec   (4351 perm/sec)   p_kst 1.202400e-01   p_cons 4.976000e-02   p_joint 3.840000e-02

Outputting figure to mutsig2_images.part000000000172/TCF7L1.3_1815_50000_0.12024_0.04976_0.0384.png
                gene_name: TCF7L1
               theta_stop: 0.088 
                    nperm: 50000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.040 

Current progress: 81 percent done.
TCFL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.625609e-02	ci left: 4.082083e-01	ci right 4.276396e-01	k: 4179	n:10000
Cons ci ratio: 7.154130e-02	ci left: 2.225711e-01	ci right 2.391859e-01	k: 2308	n:10000
KS ci ratio: 4.165368e-02	ci left: 4.597784e-01	ci right 4.794394e-01	k: 4696	n:10000
TCFL5   10000 perm   2 sec   (5863 perm/sec)   p_kst 4.696000e-01   p_cons 2.308000e-01   p_joint 4.179000e-01

Outputting figure to mutsig2_images.part000000000172/TCFL5.3_1527_10000_0.4696_0.2308_0.4179.png
                gene_name: TCFL5
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 83 percent done.
TBC1D7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.545961e-02	ci left: 6.942385e-01	ci right 7.122429e-01	k: 7033	n:10000
Cons ci ratio: 6.892452e-02	ci left: 2.359040e-01	ci right 2.528451e-01	k: 2443	n:10000
KS ci ratio: 2.419615e-02	ci left: 7.152252e-01	ci right 7.328441e-01	k: 7241	n:10000
TBC1D7   10000 perm   2 sec   (6282 perm/sec)   p_kst 7.241000e-01   p_cons 2.443000e-01   p_joint 7.033000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D7.2_910_10000_0.7241_0.2443_0.7033.png
                gene_name: TBC1D7
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 85 percent done.
TBC1D9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.984213e-02	ci left: 4.819551e-01	ci right 5.016497e-01	k: 4918	n:10000
Cons ci ratio: 5.640311e-02	ci left: 3.164175e-01	ci right 3.348842e-01	k: 3256	n:10000
KS ci ratio: 2.325932e-02	ci left: 7.308797e-01	ci right 7.481806e-01	k: 7396	n:10000
TBC1D9B   10000 perm   2 sec   (4525 perm/sec)   p_kst 7.396000e-01   p_cons 3.256000e-01   p_joint 4.918000e-01

Outputting figure to mutsig2_images.part000000000172/TBC1D9B.2_3841_10000_0.7396_0.3256_0.4918.png
                gene_name: TBC1D9B
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 87 percent done.
TBCA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.545513e-02	ci left: 1.373691e-01	ci right 1.512388e-01	k: 1442	n:10000
Cons ci ratio: 5.233511e-02	ci left: 3.498883e-01	ci right 3.687937e-01	k: 3593	n:10000
KS ci ratio: 7.054868e-02	ci left: 2.275079e-01	ci right 2.442463e-01	k: 2358	n:10000
TBCA   10000 perm   1 sec   (7315 perm/sec)   p_kst 2.358000e-01   p_cons 3.593000e-01   p_joint 1.442000e-01

Outputting figure to mutsig2_images.part000000000172/TBCA.2_343_10000_0.2358_0.3593_0.1442.png
                gene_name: TBCA
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 89 percent done.
TBCC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.068661e-02	ci left: 2.853789e-01	ci right 3.033411e-01	k: 2943	n:10000
Cons ci ratio: 8.101469e-02	ci left: 1.819585e-01	ci right 1.974227e-01	k: 1896	n:10000
KS ci ratio: 1.402266e-02	ci left: 8.802224e-01	ci right 8.927514e-01	k: 8866	n:10000
TBCC   10000 perm   2 sec   (6657 perm/sec)   p_kst 8.866000e-01   p_cons 1.896000e-01   p_joint 2.943000e-01

Outputting figure to mutsig2_images.part000000000172/TBCC.2_1045_10000_0.8866_0.1896_0.2943.png
                gene_name: TBCC
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 91 percent done.
TBCEL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.835992e-02	ci left: 3.017350e-01	ci right 3.199753e-01	k: 3108	n:10000
Cons ci ratio: 4.250783e-02	ci left: 4.496954e-01	ci right 4.693282e-01	k: 4595	n:10000
KS ci ratio: 5.378673e-02	ci left: 3.374673e-01	ci right 3.562220e-01	k: 3468	n:10000
TBCEL   10000 perm   2 sec   (5644 perm/sec)   p_kst 3.468000e-01   p_cons 4.595000e-01   p_joint 3.108000e-01

Outputting figure to mutsig2_images.part000000000172/TBCEL.2_1303_10000_0.3468_0.4595_0.3108.png
                gene_name: TBCEL
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 92 percent done.
TBX21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.864930e-02	ci left: 4.971503e-01	ci right 5.168456e-01	k: 5070	n:10000
Cons ci ratio: 3.367660e-02	ci left: 5.655412e-01	ci right 5.850149e-01	k: 5753	n:10000
KS ci ratio: 6.025129e-02	ci left: 2.883517e-01	ci right 3.063665e-01	k: 2973	n:10000
TBX21   10000 perm   2 sec   (5818 perm/sec)   p_kst 2.973000e-01   p_cons 5.753000e-01   p_joint 5.070000e-01

Outputting figure to mutsig2_images.part000000000172/TBX21.2_1632_10000_0.2973_0.5753_0.507.png
                gene_name: TBX21
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 94 percent done.
TCEA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.076409e-02	ci left: 6.091973e-01	ci right 6.283334e-01	k: 6188	n:10000
Cons ci ratio: 5.247176e-02	ci left: 3.486956e-01	ci right 3.675871e-01	k: 3581	n:10000
KS ci ratio: 5.138321e-03	ci left: 9.804856e-01	ci right 9.856275e-01	k: 9832	n:10000
TCEA2   10000 perm   1 sec   (6810 perm/sec)   p_kst 9.832000e-01   p_cons 3.581000e-01   p_joint 6.188000e-01

Outputting figure to mutsig2_images.part000000000172/TCEA2.2_940_10000_0.9832_0.3581_0.6188.png
                gene_name: TCEA2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 96 percent done.
TCEAL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.697625e-02	ci left: 8.348036e-01	ci right 8.491966e-01	k: 8421	n:10000
KS ci ratio: 1.952111e-02	ci left: 7.933421e-01	ci right 8.090821e-01	k: 8013	n:10000
TCEAL4   10000 perm   1 sec   (7407 perm/sec)   p_kst 8.013000e-01   p_cons 8.421000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000172/TCEAL4.2_652_10000_0.8013_0.8421_1.png
                gene_name: TCEAL4
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
TCIRG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.043957e-02	ci left: 1.841239e-01	ci right 1.996560e-01	k: 1918	n:10000
Cons ci ratio: 8.846994e-02	ci left: 1.567914e-01	ci right 1.714049e-01	k: 1640	n:10000
KS ci ratio: 9.367929e-02	ci left: 1.419757e-01	ci right 1.560294e-01	k: 1489	n:10000
TCIRG1   10000 perm   2 sec   (5705 perm/sec)   p_kst 1.489000e-01   p_cons 1.640000e-01   p_joint 1.918000e-01

Outputting figure to mutsig2_images.part000000000172/TCIRG1.2_2569_10000_0.1489_0.164_0.1918.png
                gene_name: TCIRG1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000172
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 172 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1542>
Subject: Job 9894175: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1542>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000173> was used as the working directory.
Started at Sat Oct  6 00:32:20 2012
Results reported at Sat Oct  6 00:48:52 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000173.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000173.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 173  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000173.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1155.56 sec.
    Max Memory :      3677 MB
    Max Swap   :      5961 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
173
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 173
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 173: processing genes 15507 - 15596
Calculating significance of each gene.
Using projection method.
15507	TCL1A	4.499893e-02
15508	TCL1B	6.236474e-02
15509	TCN1	8.973851e-01
15510	TCN2	6.130946e-02
In gene TCOF1 the following bins exceed PROBCAP:
    COAD-AA-A01Z	categ 6	N = 4413    n = 1	mu =   3.62e-07
15511	TCOF1	4.265877e-01
15512	TCP1	7.025111e-01
In gene TCP10 the following bins exceed PROBCAP:
    COAD-AA-3852	categ 6	N = 679     n = 1	mu =   3.62e-07
15513	TCP10	1.504161e-01
15514	TCP10L	1
15515	TCP11	3.174989e-01
15516	TCP11L1	1
In gene TCP11L2 the following bins exceed PROBCAP:
    READ-AG-4015	categ 6	N = 1596    n = 1	mu =   3.29e-07
15517	TCP11L2	6.324906e-02
15518	TCTA	5.739276e-02
15519	TCTE1	1.972666e-01
15520	TCTE3	1
15521	TCTEX1D1	1.858544e-01
15522	TCTEX1D2	6.369981e-03
15523	TCTEX1D4	1
15524	TCTN1	9.235819e-01
15525	TCTN2	8.685933e-01
15526	TCTN3	4.166904e-01
15527	TDG	6.503001e-01
15528	TDGF1	1
15529	TDO2	4.383867e-01
15530	TDP1	7.767907e-01
15531	TDP2	7.978509e-01
15532	TDRD1	1.878413e-01
15533	TDRD10	9.823616e-02
15534	TDRD3	4.862890e-02
15535	TDRD5	3.377927e-01
15536	TDRD6	4.436504e-01
15537	TDRD7	5.294462e-01
15538	TDRD9	8.735598e-01
15539	TDRKH	5.525011e-01
15540	TEAD1	6.008181e-01
15541	TEAD2	4.901605e-01
15542	TEAD3	6.115418e-01
15543	TEAD4	4.878600e-01
15544	TEC	4.734265e-01
15545	TECPR1	9.979907e-01
15546	TECPR2	9.951963e-01
15547	TECR	1
15548	TECRL	5.173059e-02
15549	TECTA	1.043946e-03
15550	TECTB	4.034387e-01
15551	TEDDM1	1
15552	TEF	3.774282e-01
15553	TEK	2.128172e-02
15554	TEKT1	4.854481e-01
15555	TEKT2	8.902770e-01
15556	TEKT3	7.144545e-01
15557	TEKT4	4.857957e-01
15558	TEKT5	3.540487e-01
15559	TELO2	1
In gene TENC1 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 4455    n = 1	mu =   8.55e-07
15560	TENC1	9.956059e-01
15561	TEP1	9.417764e-01
15562	TEPP	9.112821e-01
15563	TERF1	8.920681e-01
15564	TERF2	9.470520e-01
15565	TERF2IP	2.952752e-01
15566	TERT	9.351892e-01
15567	TES	5.334975e-01
15568	TESC	7.494546e-01
15569	TESK1	8.342146e-01
In gene TESK2 the following bins exceed PROBCAP:
    COAD-AA-3986	categ 6	N = 1756    n = 1	mu =   2.96e-07
15570	TESK2	3.310110e-01
15571	TET1	3.759095e-03
15572	TET2	4.767048e-01
15573	TET3	5.878967e-01
15574	TEX10	3.092997e-01
15575	TEX101	1
15576	TEX11	1.014372e-01
15577	TEX12	2.150254e-01
15578	TEX13A	4.272647e-02
15579	TEX13B	4.610552e-01
15580	TEX14	2.595849e-01
15581	TEX15	1.121788e-01
15582	TEX19	1
15583	TEX2	9.319908e-01
15584	TEX261	4.075045e-01
15585	TEX264	6.978744e-01
15586	TEX9	1.474169e-01
15587	TF	1.450743e-02
15588	TFAM	4.405426e-01
15589	TFAP2A	8.098700e-01
15590	TFAP2B	4.353881e-02
15591	TFAP2C	4.890935e-01
15592	TFAP2D	3.912008e-03
15593	TFAP2E	1
15594	TFAP4	1
15595	TFB1M	1
15596	TFB2M	1
Done

Running MutSig 2:
Scatter job 173: processing genes 15507 - 15596
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TEX15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.309272e-02	ci left: 1.435445e-01	ci right 1.576597e-01	k: 1505	n:10000
Cons ci ratio: 1.006938e-01	ci left: 1.249344e-01	ci right 1.382810e-01	k: 1315	n:10000
KS ci ratio: 7.008223e-02	ci left: 2.298781e-01	ci right 2.466746e-01	k: 2382	n:10000
TEX15   10000 perm   4 sec   (2537 perm/sec)   p_kst 2.382000e-01   p_cons 1.315000e-01   p_joint 1.505000e-01

Joint ci ratio: 5.115703e-02	ci left: 2.211105e-01	ci right 2.327690e-01	k: 4538	n:20000
Cons ci ratio: 6.869877e-02	ci left: 1.351694e-01	ci right 1.448355e-01	k: 2799	n:20000
KS ci ratio: 4.954926e-02	ci left: 2.324088e-01	ci right 2.442673e-01	k: 4766	n:20000
TEX15   20000 perm   12 sec   (1692 perm/sec)   p_kst 2.383000e-01   p_cons 1.399500e-01   p_joint 2.269000e-01

Outputting figure to mutsig2_images.part000000000173/TEX15.27_8386_20000_0.2383_0.13995_0.2269.png
                gene_name: TEX15
               theta_stop: 0.069 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 2 percent done.
TECTA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.090974e-02	ci left: 7.702306e-01	ci right 7.866069e-01	k: 7785	n:10000
Cons ci ratio: 2.008330e-02	ci left: 7.840118e-01	ci right 8.000177e-01	k: 7921	n:10000
KS ci ratio: 2.891436e-02	ci left: 6.381450e-01	ci right 6.569690e-01	k: 6476	n:10000
TECTA   10000 perm   3 sec   (2930 perm/sec)   p_kst 6.476000e-01   p_cons 7.921000e-01   p_joint 7.785000e-01

Outputting figure to mutsig2_images.part000000000173/TECTA.26_6560_10000_0.6476_0.7921_0.7785.png
                gene_name: TECTA
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 3 percent done.
TET1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.052336e-02	ci left: 6.129143e-01	ci right 6.320143e-01	k: 6225	n:10000
Cons ci ratio: 8.189489e-02	ci left: 1.787111e-01	ci right 1.940720e-01	k: 1863	n:10000
KS ci ratio: 2.151493e-02	ci left: 7.601055e-01	ci right 7.767378e-01	k: 7685	n:10000
TET1   10000 perm   3 sec   (3205 perm/sec)   p_kst 7.685000e-01   p_cons 1.863000e-01   p_joint 6.225000e-01

Outputting figure to mutsig2_images.part000000000173/TET1.20_6455_10000_0.7685_0.1863_0.6225.png
                gene_name: TET1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 5 percent done.
TEX14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.047793e-02	ci left: 6.136175e-01	ci right 6.327106e-01	k: 6232	n:10000
Cons ci ratio: 8.192190e-02	ci left: 1.786127e-01	ci right 1.939705e-01	k: 1862	n:10000
KS ci ratio: 1.683568e-02	ci left: 8.370436e-01	ci right 8.513552e-01	k: 8443	n:10000
TEX14   10000 perm   3 sec   (3854 perm/sec)   p_kst 8.443000e-01   p_cons 1.862000e-01   p_joint 6.232000e-01

Outputting figure to mutsig2_images.part000000000173/TEX14.14_4604_10000_0.8443_0.1862_0.6232.png
                gene_name: TEX14
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 6 percent done.
TDRD6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.965928e-02	ci left: 4.842538e-01	ci right 5.039497e-01	k: 4941	n:10000
Cons ci ratio: 5.780619e-02	ci left: 3.058014e-01	ci right 3.241065e-01	k: 3149	n:10000
KS ci ratio: 4.868751e-02	ci left: 3.836086e-01	ci right 4.028536e-01	k: 3932	n:10000
TDRD6   10000 perm   3 sec   (3336 perm/sec)   p_kst 3.932000e-01   p_cons 3.149000e-01   p_joint 4.941000e-01

Outputting figure to mutsig2_images.part000000000173/TDRD6.13_6307_10000_0.3932_0.3149_0.4941.png
                gene_name: TDRD6
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 8 percent done.
TEK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.147777e-02	ci left: 9.156427e-01	ci right 9.263105e-01	k: 9211	n:10000
KS ci ratio: 2.154515e-02	ci left: 7.595994e-01	ci right 7.762442e-01	k: 7680	n:10000
TEK   10000 perm   2 sec   (4107 perm/sec)   p_kst 7.680000e-01   p_cons 9.211000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TEK.11_3467_10000_0.768_0.9211_1.png
                gene_name: TEK
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
TF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.129536e-02	ci left: 9.180131e-01	ci right 9.285388e-01	k: 9234	n:10000
Cons ci ratio: 2.899040e-02	ci left: 6.369381e-01	ci right 6.557766e-01	k: 6464	n:10000
KS ci ratio: 1.599533e-02	ci left: 8.502907e-01	ci right 8.641005e-01	k: 8573	n:10000
TF   10000 perm   2 sec   (4729 perm/sec)   p_kst 8.573000e-01   p_cons 6.464000e-01   p_joint 9.234000e-01

Outputting figure to mutsig2_images.part000000000173/TF.11_2165_10000_0.8573_0.6464_0.9234.png
                gene_name: TF
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 11 percent done.
TDRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.565400e-02	ci left: 8.555948e-01	ci right 8.691933e-01	k: 8625	n:10000
KS ci ratio: 1.947207e-02	ci left: 7.941537e-01	ci right 8.098700e-01	k: 8021	n:10000
TDRD1   10000 perm   2 sec   (4508 perm/sec)   p_kst 8.021000e-01   p_cons 8.625000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TDRD1.10_3670_10000_0.8021_0.8625_1.png
                gene_name: TDRD1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
TFAP2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.483822e-01	ci left: 2.127733e-02	ci right 2.740406e-02	k: 242	n:10000
Cons ci ratio: 6.241010e-02	ci left: 2.739874e-01	ci right 2.917393e-01	k: 2828	n:10000
KS ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
TFAP2B   10000 perm   2 sec   (5316 perm/sec)   p_kst 1.070000e-02   p_cons 2.828000e-01   p_joint 2.420000e-02

Joint ci ratio: 1.829035e-01	ci left: 2.039379e-02	ci right 2.454665e-02	k: 448	n:20000
Cons ci ratio: 4.380678e-02	ci left: 2.795947e-01	ci right 2.921676e-01	k: 5717	n:20000
KS ci ratio: 2.531120e-01	ci left: 1.034973e-02	ci right 1.339466e-02	k: 236	n:20000
TFAP2B   20000 perm   4 sec   (4664 perm/sec)   p_kst 1.180000e-02   p_cons 2.858500e-01   p_joint 2.240000e-02

Joint ci ratio: 1.416262e-01	ci left: 2.313404e-02	ci right 2.669212e-02	k: 746	n:30000
Cons ci ratio: 3.579152e-02	ci left: 2.804929e-01	ci right 2.907486e-01	k: 8568	n:30000
KS ci ratio: 1.992804e-01	ci left: 1.146358e-02	ci right 1.403207e-02	k: 381	n:30000
TFAP2B   30000 perm   7 sec   (4446 perm/sec)   p_kst 1.270000e-02   p_cons 2.856000e-01   p_joint 2.486667e-02

Joint ci ratio: 1.257964e-01	ci left: 2.220724e-02	ci right 2.521245e-02	k: 947	n:40000
Cons ci ratio: 3.086463e-02	ci left: 2.829184e-01	ci right 2.918125e-01	k: 11494	n:40000
KS ci ratio: 1.738547e-01	ci left: 1.145814e-02	ci right 1.366347e-02	k: 501	n:40000
TFAP2B   40000 perm   9 sec   (4262 perm/sec)   p_kst 1.252500e-02   p_cons 2.873500e-01   p_joint 2.367500e-02

Joint ci ratio: 1.081114e-01	ci left: 2.423323e-02	ci right 2.702222e-02	k: 1280	n:50000
Cons ci ratio: 2.770185e-02	ci left: 2.819819e-01	ci right 2.899230e-01	k: 14297	n:50000
KS ci ratio: 1.554381e-01	ci left: 1.158300e-02	ci right 1.355419e-02	k: 627	n:50000
TFAP2B   50000 perm   12 sec   (4125 perm/sec)   p_kst 1.254000e-02   p_cons 2.859400e-01   p_joint 2.560000e-02

Joint ci ratio: 1.102087e-01	ci left: 1.951079e-02	ci right 2.180257e-02	k: 1238	n:60000
Cons ci ratio: 2.535610e-02	ci left: 2.812407e-01	ci right 2.884801e-01	k: 17091	n:60000
KS ci ratio: 1.419524e-01	ci left: 1.165848e-02	ci right 1.345580e-02	k: 752	n:60000
TFAP2B   60000 perm   15 sec   (4045 perm/sec)   p_kst 1.253333e-02   p_cons 2.848500e-01   p_joint 2.063333e-02

Joint ci ratio: 1.140868e-01	ci left: 1.563867e-02	ci right 1.754456e-02	k: 1160	n:70000
Cons ci ratio: 2.344204e-02	ci left: 2.820848e-01	ci right 2.887901e-01	k: 19980	n:70000
KS ci ratio: 1.319943e-01	ci left: 1.162097e-02	ci right 1.327696e-02	k: 870	n:70000
TFAP2B   70000 perm   18 sec   (3954 perm/sec)   p_kst 1.242857e-02   p_cons 2.854286e-01   p_joint 1.657143e-02

Joint ci ratio: 1.063061e-01	ci left: 1.582333e-02	ci right 1.761197e-02	k: 1336	n:80000
Cons ci ratio: 2.193637e-02	ci left: 2.821476e-01	ci right 2.884180e-01	k: 22822	n:80000
KS ci ratio: 1.228726e-01	ci left: 1.179006e-02	ci right 1.334559e-02	k: 1004	n:80000
TFAP2B   80000 perm   21 sec   (3881 perm/sec)   p_kst 1.255000e-02   p_cons 2.852750e-01   p_joint 1.670000e-02

Joint ci ratio: 9.361155e-02	ci left: 1.821573e-02	ci right 2.001546e-02	k: 1719	n:90000
Cons ci ratio: 2.069753e-02	ci left: 2.820190e-01	ci right 2.879282e-01	k: 25647	n:90000
KS ci ratio: 1.164007e-01	ci left: 1.171958e-02	ci right 1.317876e-02	k: 1119	n:90000
TFAP2B   90000 perm   24 sec   (3811 perm/sec)   p_kst 1.243333e-02   p_cons 2.849667e-01   p_joint 1.910000e-02

Joint ci ratio: 9.024107e-02	ci left: 1.768359e-02	ci right 1.936450e-02	k: 1851	n:100000
Cons ci ratio: 1.964205e-02	ci left: 2.820339e-01	ci right 2.876386e-01	k: 28483	n:100000
KS ci ratio: 1.103128e-01	ci left: 1.178165e-02	ci right 1.316684e-02	k: 1246	n:100000
TFAP2B   100000 perm   27 sec   (3750 perm/sec)   p_kst 1.246000e-02   p_cons 2.848300e-01   p_joint 1.851000e-02

Joint ci ratio: 8.811790e-02	ci left: 1.689339e-02	ci right 1.845946e-02	k: 1943	n:110000
Cons ci ratio: 1.873607e-02	ci left: 2.819890e-01	ci right 2.873314e-01	k: 31312	n:110000
KS ci ratio: 1.057545e-01	ci left: 1.168354e-02	ci right 1.299690e-02	k: 1356	n:110000
TFAP2B   110000 perm   30 sec   (3682 perm/sec)   p_kst 1.232727e-02   p_cons 2.846545e-01   p_joint 1.766364e-02

Joint ci ratio: 8.303569e-02	ci left: 1.747566e-02	ci right 1.899774e-02	k: 2187	n:120000
Cons ci ratio: 1.793388e-02	ci left: 2.822060e-01	ci right 2.873211e-01	k: 34171	n:120000
KS ci ratio: 1.011266e-01	ci left: 1.174089e-02	ci right 1.299951e-02	k: 1483	n:120000
TFAP2B   120000 perm   33 sec   (3629 perm/sec)   p_kst 1.235833e-02   p_cons 2.847583e-01   p_joint 1.822500e-02

Joint ci ratio: 8.370014e-02	ci left: 1.589735e-02	ci right 1.729357e-02	k: 2156	n:130000
Cons ci ratio: 1.723770e-02	ci left: 2.821328e-01	ci right 2.870460e-01	k: 36996	n:130000
KS ci ratio: 9.696608e-02	ci left: 1.181300e-02	ci right 1.302428e-02	k: 1613	n:130000
TFAP2B   130000 perm   36 sec   (3567 perm/sec)   p_kst 1.240769e-02   p_cons 2.845846e-01   p_joint 1.658462e-02

Outputting figure to mutsig2_images.part000000000173/TFAP2B.9_1411_130000_0.012408_0.28458_0.016585.png
                gene_name: TFAP2B
               theta_stop: 0.097 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 14 percent done.
TDRD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.437615e-01	ci left: 6.420510e-02	ci right 7.424761e-02	k: 691	n:10000
Cons ci ratio: 2.078848e-02	ci left: 7.722565e-01	ci right 7.885799e-01	k: 7805	n:10000
KS ci ratio: 2.468251e-01	ci left: 2.155910e-02	ci right 2.772208e-02	k: 245	n:10000
TDRD3   10000 perm   2 sec   (4639 perm/sec)   p_kst 2.450000e-02   p_cons 7.805000e-01   p_joint 6.910000e-02

Joint ci ratio: 1.040601e-01	ci left: 6.279246e-02	ci right 6.973429e-02	k: 1324	n:20000
Cons ci ratio: 1.466526e-02	ci left: 7.755055e-01	ci right 7.870126e-01	k: 15626	n:20000
KS ci ratio: 1.752676e-01	ci left: 2.225822e-02	ci right 2.658156e-02	k: 487	n:20000
TDRD3   20000 perm   5 sec   (4203 perm/sec)   p_kst 2.435000e-02   p_cons 7.813000e-01   p_joint 6.620000e-02

Joint ci ratio: 8.283178e-02	ci left: 6.658209e-02	ci right 7.236829e-02	k: 2083	n:30000
Cons ci ratio: 1.228196e-02	ci left: 7.677133e-01	ci right 7.772339e-01	k: 23175	n:30000
KS ci ratio: 1.447362e-01	ci left: 2.213689e-02	ci right 2.562282e-02	k: 715	n:30000
TDRD3   30000 perm   7 sec   (4045 perm/sec)   p_kst 2.383333e-02   p_cons 7.725000e-01   p_joint 6.943333e-02

Joint ci ratio: 7.450493e-02	ci left: 6.230845e-02	ci right 6.715497e-02	k: 2588	n:40000
Cons ci ratio: 1.062060e-02	ci left: 7.688879e-01	ci right 7.771225e-01	k: 30921	n:40000
KS ci ratio: 1.268280e-01	ci left: 2.184384e-02	ci right 2.482592e-02	k: 932	n:40000
TDRD3   40000 perm   10 sec   (3934 perm/sec)   p_kst 2.330000e-02   p_cons 7.730250e-01   p_joint 6.470000e-02

Joint ci ratio: 6.903392e-02	ci left: 5.848486e-02	ci right 6.268633e-02	k: 3028	n:50000
Cons ci ratio: 9.508145e-03	ci left: 7.690008e-01	ci right 7.763675e-01	k: 38635	n:50000
KS ci ratio: 1.135509e-01	ci left: 2.195657e-02	ci right 2.461918e-02	k: 1163	n:50000
TDRD3   50000 perm   13 sec   (3840 perm/sec)   p_kst 2.326000e-02   p_cons 7.727000e-01   p_joint 6.056000e-02

Joint ci ratio: 6.800843e-02	ci left: 5.067955e-02	ci right 5.426390e-02	k: 3147	n:60000
Cons ci ratio: 8.512354e-03	ci left: 7.761274e-01	ci right 7.827789e-01	k: 46768	n:60000
KS ci ratio: 1.051230e-01	ci left: 2.145805e-02	ci right 2.385509e-02	k: 1358	n:60000
TDRD3   60000 perm   16 sec   (3764 perm/sec)   p_kst 2.263333e-02   p_cons 7.794667e-01   p_joint 5.245000e-02

Joint ci ratio: 5.777089e-02	ci left: 5.992862e-02	ci right 6.350781e-02	k: 4319	n:70000
Cons ci ratio: 7.879815e-03	ci left: 7.764244e-01	ci right 7.825809e-01	k: 54566	n:70000
KS ci ratio: 9.772000e-02	ci left: 2.137223e-02	ci right 2.358189e-02	k: 1572	n:70000
TDRD3   70000 perm   19 sec   (3691 perm/sec)   p_kst 2.245714e-02   p_cons 7.795143e-01   p_joint 6.170000e-02

Outputting figure to mutsig2_images.part000000000173/TDRD3.8_2287_70000_0.022457_0.77951_0.0617.png
                gene_name: TDRD3
               theta_stop: 0.098 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.064 

Current progress: 16 percent done.
TEX11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.025773e-02	ci left: 6.170337e-01	ci right 6.360925e-01	k: 6266	n:10000
KS ci ratio: 1.120740e-02	ci left: 9.191472e-01	ci right 9.296040e-01	k: 9245	n:10000
TEX11   10000 perm   2 sec   (4514 perm/sec)   p_kst 9.245000e-01   p_cons 6.266000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TEX11.8_2980_10000_0.9245_0.6266_1.png
                gene_name: TEX11
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
TCOF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.398907e-01	ci left: 6.768608e-02	ci right 7.796444e-02	k: 727	n:10000
Cons ci ratio: 8.686029e-02	ci left: 1.618004e-01	ci right 1.765928e-01	k: 1691	n:10000
KS ci ratio: 1.617042e-01	ci left: 5.099641e-02	ci right 6.006470e-02	k: 554	n:10000
TCOF1   10000 perm   3 sec   (3866 perm/sec)   p_kst 5.540000e-02   p_cons 1.691000e-01   p_joint 7.270000e-02

Joint ci ratio: 8.996207e-02	ci left: 8.278644e-02	ci right 9.063420e-02	k: 1733	n:20000
Cons ci ratio: 6.205046e-02	ci left: 1.611634e-01	ci right 1.715338e-01	k: 3326	n:20000
KS ci ratio: 1.116540e-01	ci left: 5.479998e-02	ci right 6.132925e-02	k: 1160	n:20000
TCOF1   20000 perm   6 sec   (3598 perm/sec)   p_kst 5.800000e-02   p_cons 1.663000e-01   p_joint 8.665000e-02

Joint ci ratio: 1.170570e-01	ci left: 3.392034e-02	ci right 3.817013e-02	k: 1080	n:30000
Cons ci ratio: 4.753906e-02	ci left: 1.803559e-01	ci right 1.891719e-01	k: 5542	n:30000
KS ci ratio: 9.060103e-02	ci left: 5.606623e-02	ci right 6.141962e-02	k: 1761	n:30000
TCOF1   30000 perm   9 sec   (3460 perm/sec)   p_kst 5.870000e-02   p_cons 1.847333e-01   p_joint 3.600000e-02

Joint ci ratio: 7.623544e-02	ci left: 5.963153e-02	ci right 6.438231e-02	k: 2479	n:40000
Cons ci ratio: 4.112464e-02	ci left: 1.812796e-01	ci right 1.889162e-01	k: 7403	n:40000
KS ci ratio: 7.822165e-02	ci left: 5.675958e-02	ci right 6.140469e-02	k: 2362	n:40000
TCOF1   40000 perm   12 sec   (3370 perm/sec)   p_kst 5.905000e-02   p_cons 1.850750e-01   p_joint 6.197500e-02

Outputting figure to mutsig2_images.part000000000173/TCOF1.7_4596_40000_0.05905_0.18507_0.061975.png
                gene_name: TCOF1
               theta_stop: 0.078 
                    nperm: 40000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.064 

Current progress: 19 percent done.
TEP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.159954e-02	ci left: 7.586885e-01	ci right 7.753556e-01	k: 7671	n:10000
KS ci ratio: 1.854737e-02	ci left: 8.093811e-01	ci right 8.246338e-01	k: 8171	n:10000
TEP1   10000 perm   3 sec   (3284 perm/sec)   p_kst 8.171000e-01   p_cons 7.671000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TEP1.7_8100_10000_0.8171_0.7671_1.png
                gene_name: TEP1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
TFAP2D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.055019e-01	ci left: 1.148645e-01	ci right 1.277571e-01	k: 1212	n:10000
Cons ci ratio: 3.862612e-02	ci left: 4.974503e-01	ci right 5.171454e-01	k: 5073	n:10000
KS ci ratio: 1.347678e-01	ci left: 7.272051e-02	ci right 8.332686e-02	k: 779	n:10000
TFAP2D   10000 perm   2 sec   (5909 perm/sec)   p_kst 7.790000e-02   p_cons 5.073000e-01   p_joint 1.212000e-01

Joint ci ratio: 7.461996e-02	ci left: 1.167073e-01	ci right 1.258032e-01	k: 2424	n:20000
Cons ci ratio: 2.715408e-02	ci left: 5.032959e-01	ci right 5.172011e-01	k: 10205	n:20000
KS ci ratio: 9.352068e-02	ci left: 7.696131e-02	ci right 8.456110e-02	k: 1614	n:20000
TFAP2D   20000 perm   4 sec   (5127 perm/sec)   p_kst 8.070000e-02   p_cons 5.102500e-01   p_joint 1.212000e-01

Outputting figure to mutsig2_images.part000000000173/TFAP2D.7_1391_20000_0.0807_0.51025_0.1212.png
                gene_name: TFAP2D
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.081 
        ci_ks_bounds_left: 0.077 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 22 percent done.
TDRD5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.375459e-02	ci left: 7.225963e-01	ci right 7.400688e-01	k: 7314	n:10000
Cons ci ratio: 3.581985e-02	ci left: 5.350779e-01	ci right 5.546960e-01	k: 5449	n:10000
KS ci ratio: 3.465118e-02	ci left: 5.515074e-01	ci right 5.710568e-01	k: 5613	n:10000
TDRD5   10000 perm   2 sec   (4631 perm/sec)   p_kst 5.613000e-01   p_cons 5.449000e-01   p_joint 7.314000e-01

Outputting figure to mutsig2_images.part000000000173/TDRD5.6_3010_10000_0.5613_0.5449_0.7314.png
                gene_name: TDRD5
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 24 percent done.
TDRD7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.022577e-01	ci left: 3.252956e-02	ci right 3.994377e-02	k: 361	n:10000
Cons ci ratio: 7.145810e-01	ci left: 1.943009e-03	ci right 4.162249e-03	k: 29	n:10000
KS ci ratio: 2.196193e-02	ci left: 7.526172e-01	ci right 7.694305e-01	k: 7611	n:10000
TDRD7   10000 perm   2 sec   (4941 perm/sec)   p_kst 7.611000e-01   p_cons 2.900000e-03   p_joint 3.610000e-02

Joint ci ratio: 2.356187e-01	ci left: 1.204081e-02	ci right 1.530284e-02	k: 272	n:20000
Cons ci ratio: 4.817099e-01	ci left: 2.509150e-03	ci right 4.140543e-03	k: 65	n:20000
KS ci ratio: 1.499948e-02	ci left: 7.676345e-01	ci right 7.792858e-01	k: 15470	n:20000
TDRD7   20000 perm   5 sec   (4419 perm/sec)   p_kst 7.735000e-01   p_cons 3.250000e-03   p_joint 1.360000e-02

Joint ci ratio: 2.132920e-01	ci left: 9.945298e-03	ci right 1.235078e-02	k: 333	n:30000
Cons ci ratio: 4.036765e-01	ci left: 2.502807e-03	ci right 3.796384e-03	k: 93	n:30000
KS ci ratio: 1.218526e-02	ci left: 7.705002e-01	ci right 7.799798e-01	k: 23258	n:30000
TDRD7   30000 perm   7 sec   (4217 perm/sec)   p_kst 7.752667e-01   p_cons 3.100000e-03   p_joint 1.110000e-02

Joint ci ratio: 1.656890e-01	ci left: 1.265568e-02	ci right 1.496570e-02	k: 551	n:40000
Cons ci ratio: 3.368059e-01	ci left: 2.807559e-03	ci right 3.966389e-03	k: 134	n:40000
KS ci ratio: 1.062589e-02	ci left: 7.687117e-01	ci right 7.769486e-01	k: 30914	n:40000
TDRD7   40000 perm   10 sec   (4004 perm/sec)   p_kst 7.728500e-01   p_cons 3.350000e-03   p_joint 1.377500e-02

Joint ci ratio: 1.490759e-01	ci left: 1.262236e-02	ci right 1.467468e-02	k: 681	n:50000
Cons ci ratio: 3.046646e-01	ci left: 2.797855e-03	ci right 3.821154e-03	k: 164	n:50000
KS ci ratio: 9.521136e-03	ci left: 7.685181e-01	ci right 7.758903e-01	k: 38611	n:50000
TDRD7   50000 perm   13 sec   (3930 perm/sec)   p_kst 7.722200e-01   p_cons 3.280000e-03   p_joint 1.362000e-02

Joint ci ratio: 1.458256e-01	ci left: 1.103162e-02	ci right 1.278274e-02	k: 713	n:60000
Cons ci ratio: 2.753433e-01	ci left: 2.903486e-03	ci right 3.845562e-03	k: 201	n:60000
KS ci ratio: 8.700707e-03	ci left: 7.684708e-01	ci right 7.752029e-01	k: 46311	n:60000
TDRD7   60000 perm   16 sec   (3862 perm/sec)   p_kst 7.718500e-01   p_cons 3.350000e-03   p_joint 1.188333e-02

Joint ci ratio: 1.451320e-01	ci left: 9.565265e-03	ci right 1.107574e-02	k: 721	n:70000
Cons ci ratio: 2.862736e-01	ci left: 2.289392e-03	ci right 3.067032e-03	k: 186	n:70000
KS ci ratio: 8.052185e-03	ci left: 7.688593e-01	ci right 7.750896e-01	k: 54039	n:70000
TDRD7   70000 perm   18 sec   (3800 perm/sec)   p_kst 7.719857e-01   p_cons 2.657143e-03   p_joint 1.030000e-02

Joint ci ratio: 1.399438e-01	ci left: 9.032416e-03	ci right 1.040349e-02	k: 776	n:80000
Cons ci ratio: 2.707960e-01	ci left: 2.259018e-03	ci right 2.977809e-03	k: 208	n:80000
KS ci ratio: 7.524869e-03	ci left: 7.694031e-01	ci right 7.752271e-01	k: 61786	n:80000
TDRD7   80000 perm   21 sec   (3739 perm/sec)   p_kst 7.723250e-01   p_cons 2.600000e-03   p_joint 9.700000e-03

Joint ci ratio: 1.420630e-01	ci left: 7.792634e-03	ci right 8.994931e-03	k: 754	n:90000
Cons ci ratio: 2.537583e-01	ci left: 2.309082e-03	ci right 2.990272e-03	k: 237	n:90000
KS ci ratio: 7.099950e-03	ci left: 7.693005e-01	ci right 7.747930e-01	k: 69485	n:90000
TDRD7   90000 perm   24 sec   (3677 perm/sec)   p_kst 7.720556e-01   p_cons 2.633333e-03   p_joint 8.377778e-03

Joint ci ratio: 1.481757e-01	ci left: 6.434806e-03	ci right 7.474101e-03	k: 694	n:100000
Cons ci ratio: 2.423238e-01	ci left: 2.293881e-03	ci right 2.935511e-03	k: 260	n:100000
KS ci ratio: 6.749104e-03	ci left: 7.687342e-01	ci right 7.739500e-01	k: 77135	n:100000
TDRD7   100000 perm   28 sec   (3607 perm/sec)   p_kst 7.713500e-01   p_cons 2.600000e-03   p_joint 6.940000e-03

Joint ci ratio: 1.489798e-01	ci left: 5.788408e-03	ci right 6.728819e-03	k: 687	n:110000
Cons ci ratio: 2.335477e-01	ci left: 2.256323e-03	ci right 2.861289e-03	k: 280	n:110000
KS ci ratio: 6.431120e-03	ci left: 7.690710e-01	ci right 7.740420e-01	k: 84872	n:110000
TDRD7   110000 perm   31 sec   (3554 perm/sec)   p_kst 7.715636e-01   p_cons 2.545455e-03   p_joint 6.245455e-03

Joint ci ratio: 9.885797e-02	ci left: 1.229356e-02	ci right 1.358014e-02	k: 1551	n:120000
Cons ci ratio: 2.249127e-01	ci left: 2.241102e-03	ci right 2.816693e-03	k: 302	n:120000
KS ci ratio: 6.160915e-03	ci left: 7.689715e-01	ci right 7.737320e-01	k: 92563	n:120000
TDRD7   120000 perm   34 sec   (3501 perm/sec)   p_kst 7.713583e-01   p_cons 2.516667e-03   p_joint 1.292500e-02

Joint ci ratio: 9.583018e-02	ci left: 1.209834e-02	ci right 1.332354e-02	k: 1651	n:130000
Cons ci ratio: 2.168355e-01	ci left: 2.235847e-03	ci right 2.786719e-03	k: 325	n:130000
KS ci ratio: 5.920968e-03	ci left: 7.689607e-01	ci right 7.735349e-01	k: 100263	n:130000
TDRD7   130000 perm   38 sec   (3449 perm/sec)   p_kst 7.712538e-01   p_cons 2.500000e-03   p_joint 1.270000e-02

Joint ci ratio: 9.768539e-02	ci left: 1.081562e-02	ci right 1.193333e-02	k: 1591	n:140000
Cons ci ratio: 2.098720e-01	ci left: 2.224890e-03	ci right 2.753195e-03	k: 347	n:140000
KS ci ratio: 5.703686e-03	ci left: 7.691625e-01	ci right 7.735692e-01	k: 107992	n:140000
TDRD7   140000 perm   41 sec   (3392 perm/sec)   p_kst 7.713714e-01   p_cons 2.478571e-03   p_joint 1.136429e-02

Joint ci ratio: 8.473585e-02	ci left: 1.347025e-02	ci right 1.466865e-02	k: 2109	n:150000
Cons ci ratio: 2.052137e-01	ci left: 2.177681e-03	ci right 2.681859e-03	k: 363	n:150000
KS ci ratio: 5.516295e-03	ci left: 7.688517e-01	ci right 7.731112e-01	k: 115648	n:150000
TDRD7   150000 perm   45 sec   (3337 perm/sec)   p_kst 7.709867e-01   p_cons 2.420000e-03   p_joint 1.406000e-02

Joint ci ratio: 8.475329e-02	ci left: 1.263424e-02	ci right 1.375850e-02	k: 2110	n:160000
Cons ci ratio: 2.019203e-01	ci left: 2.112746e-03	ci right 2.593071e-03	k: 375	n:160000
KS ci ratio: 5.345749e-03	ci left: 7.686133e-01	ci right 7.727394e-01	k: 123309	n:160000
TDRD7   160000 perm   49 sec   (3286 perm/sec)   p_kst 7.706812e-01   p_cons 2.343750e-03   p_joint 1.318750e-02

Joint ci ratio: 7.913249e-02	ci left: 1.366600e-02	ci right 1.479771e-02	k: 2418	n:170000
Cons ci ratio: 1.970068e-01	ci left: 2.094648e-03	ci right 2.557880e-03	k: 394	n:170000
KS ci ratio: 5.183878e-03	ci left: 7.688298e-01	ci right 7.728315e-01	k: 131042	n:170000
TDRD7   170000 perm   53 sec   (3217 perm/sec)   p_kst 7.708353e-01   p_cons 2.317647e-03   p_joint 1.422353e-02

Joint ci ratio: 7.123607e-02	ci left: 1.595473e-02	ci right 1.713869e-02	k: 2977	n:180000
Cons ci ratio: 1.658381e-01	ci left: 2.837788e-03	ci right 3.356198e-03	k: 556	n:180000
KS ci ratio: 5.037297e-03	ci left: 7.689236e-01	ci right 7.728121e-01	k: 138757	n:180000
TDRD7   180000 perm   57 sec   (3161 perm/sec)   p_kst 7.708722e-01   p_cons 3.088889e-03   p_joint 1.653889e-02

Joint ci ratio: 7.026748e-02	ci left: 1.554918e-02	ci right 1.668671e-02	k: 3061	n:190000
Cons ci ratio: 1.607233e-01	ci left: 2.870167e-03	ci right 3.376759e-03	k: 592	n:190000
KS ci ratio: 4.900952e-03	ci left: 7.691197e-01	ci right 7.729036e-01	k: 146493	n:190000
TDRD7   190000 perm   61 sec   (3120 perm/sec)   p_kst 7.710158e-01   p_cons 3.115789e-03   p_joint 1.611053e-02

Joint ci ratio: 6.938146e-02	ci left: 1.516463e-02	ci right 1.625947e-02	k: 3141	n:200000
Cons ci ratio: 1.578260e-01	ci left: 2.832270e-03	ci right 3.322308e-03	k: 614	n:200000
KS ci ratio: 4.779033e-03	ci left: 7.690066e-01	ci right 7.726955e-01	k: 154171	n:200000
TDRD7   200000 perm   65 sec   (3082 perm/sec)   p_kst 7.708550e-01   p_cons 3.070000e-03   p_joint 1.570500e-02

Joint ci ratio: 6.984923e-02	ci left: 1.425979e-02	ci right 1.529652e-02	k: 3102	n:210000
Cons ci ratio: 1.533982e-01	ci left: 2.862158e-03	ci right 3.342197e-03	k: 650	n:210000
KS ci ratio: 4.662258e-03	ci left: 7.691729e-01	ci right 7.727720e-01	k: 161905	n:210000
TDRD7   210000 perm   69 sec   (3042 perm/sec)   p_kst 7.709762e-01   p_cons 3.095238e-03   p_joint 1.477143e-02

Joint ci ratio: 6.897665e-02	ci left: 1.396887e-02	ci right 1.497125e-02	k: 3182	n:220000
Cons ci ratio: 1.500923e-01	ci left: 2.858872e-03	ci right 3.327099e-03	k: 679	n:220000
KS ci ratio: 4.550889e-03	ci left: 7.695391e-01	ci right 7.730537e-01	k: 169686	n:220000
TDRD7   220000 perm   73 sec   (3005 perm/sec)   p_kst 7.713000e-01   p_cons 3.086364e-03   p_joint 1.446364e-02

Joint ci ratio: 6.818859e-02	ci left: 1.368195e-02	ci right 1.465209e-02	k: 3257	n:230000
Cons ci ratio: 1.478302e-01	ci left: 2.822471e-03	ci right 3.277153e-03	k: 700	n:230000
KS ci ratio: 4.625552e-03	ci left: 7.556776e-01	ci right 7.591854e-01	k: 174210	n:230000
TDRD7   230000 perm   77 sec   (2969 perm/sec)   p_kst 7.574348e-01   p_cons 3.043478e-03   p_joint 1.416087e-02

Joint ci ratio: 6.690929e-02	ci left: 1.362799e-02	ci right 1.457546e-02	k: 3383	n:240000
Cons ci ratio: 1.444681e-01	ci left: 2.837342e-03	ci right 3.283127e-03	k: 733	n:240000
KS ci ratio: 4.527409e-03	ci left: 7.557759e-01	ci right 7.592095e-01	k: 181799	n:240000
TDRD7   240000 perm   82 sec   (2935 perm/sec)   p_kst 7.574958e-01   p_cons 3.054167e-03   p_joint 1.409583e-02

Joint ci ratio: 6.159231e-02	ci left: 1.545267e-02	ci right 1.643860e-02	k: 3985	n:250000
Cons ci ratio: 1.416035e-01	ci left: 2.839554e-03	ci right 3.276093e-03	k: 763	n:250000
KS ci ratio: 4.436176e-03	ci left: 7.557909e-01	ci right 7.591551e-01	k: 189369	n:250000
TDRD7   250000 perm   86 sec   (2900 perm/sec)   p_kst 7.574760e-01   p_cons 3.052000e-03   p_joint 1.594000e-02

Joint ci ratio: 7.096365e-02	ci left: 1.118817e-02	ci right 1.201508e-02	k: 3015	n:260000
Cons ci ratio: 1.532084e-01	ci left: 2.319090e-03	ci right 2.707517e-03	k: 652	n:260000
KS ci ratio: 4.351111e-03	ci left: 7.557321e-01	ci right 7.590314e-01	k: 196920	n:260000
TDRD7   260000 perm   91 sec   (2866 perm/sec)   p_kst 7.573846e-01   p_cons 2.507692e-03   p_joint 1.159615e-02

Joint ci ratio: 6.976116e-02	ci left: 1.115583e-02	ci right 1.196582e-02	k: 3120	n:270000
Cons ci ratio: 1.500249e-01	ci left: 2.332968e-03	ci right 2.714872e-03	k: 680	n:270000
KS ci ratio: 4.268305e-03	ci left: 7.558899e-01	ci right 7.591268e-01	k: 204528	n:270000
TDRD7   270000 perm   95 sec   (2833 perm/sec)   p_kst 7.575111e-01   p_cons 2.518519e-03   p_joint 1.155556e-02

Joint ci ratio: 6.930567e-02	ci left: 1.090475e-02	ci right 1.169113e-02	k: 3162	n:280000
Cons ci ratio: 1.471360e-01	ci left: 2.342493e-03	ci right 2.717922e-03	k: 707	n:280000
KS ci ratio: 4.190419e-03	ci left: 7.560047e-01	ci right 7.591828e-01	k: 212127	n:280000
TDRD7   280000 perm   100 sec   (2797 perm/sec)   p_kst 7.575964e-01   p_cons 2.525000e-03   p_joint 1.129286e-02

Joint ci ratio: 6.808938e-02	ci left: 1.091508e-02	ci right 1.168784e-02	k: 3276	n:290000
Cons ci ratio: 1.448033e-01	ci left: 2.338130e-03	ci right 2.706407e-03	k: 730	n:290000
KS ci ratio: 4.117729e-03	ci left: 7.560153e-01	ci right 7.591382e-01	k: 219698	n:290000
TDRD7   290000 perm   105 sec   (2763 perm/sec)   p_kst 7.575793e-01   p_cons 2.517241e-03   p_joint 1.129655e-02

Joint ci ratio: 6.585330e-02	ci left: 1.128875e-02	ci right 1.206072e-02	k: 3501	n:300000
Cons ci ratio: 1.419193e-01	ci left: 2.356607e-03	ci right 2.719775e-03	k: 760	n:300000
KS ci ratio: 4.046490e-03	ci left: 7.562261e-01	ci right 7.592956e-01	k: 227329	n:300000
TDRD7   300000 perm   110 sec   (2733 perm/sec)   p_kst 7.577633e-01   p_cons 2.533333e-03   p_joint 1.167000e-02

Joint ci ratio: 6.481628e-02	ci left: 1.128316e-02	ci right 1.204214e-02	k: 3614	n:310000
Cons ci ratio: 1.400916e-01	ci left: 2.342827e-03	ci right 2.698833e-03	k: 780	n:310000
KS ci ratio: 3.979382e-03	ci left: 7.563719e-01	ci right 7.593910e-01	k: 234944	n:310000
TDRD7   310000 perm   115 sec   (2704 perm/sec)   p_kst 7.578839e-01   p_cons 2.516129e-03   p_joint 1.165806e-02

Joint ci ratio: 6.386144e-02	ci left: 1.126570e-02	ci right 1.201193e-02	k: 3723	n:320000
Cons ci ratio: 1.378162e-01	ci left: 2.348039e-03	ci right 2.698567e-03	k: 806	n:320000
KS ci ratio: 3.916872e-03	ci left: 7.563806e-01	ci right 7.593522e-01	k: 242518	n:320000
TDRD7   320000 perm   120 sec   (2675 perm/sec)   p_kst 7.578687e-01   p_cons 2.518750e-03   p_joint 1.163438e-02

Joint ci ratio: 6.458703e-02	ci left: 1.068270e-02	ci right 1.139865e-02	k: 3642	n:330000
Cons ci ratio: 1.352419e-01	ci left: 2.367619e-03	ci right 2.713936e-03	k: 837	n:330000
KS ci ratio: 3.855244e-03	ci left: 7.565775e-01	ci right 7.595029e-01	k: 250154	n:330000
TDRD7   330000 perm   125 sec   (2645 perm/sec)   p_kst 7.580424e-01   p_cons 2.536364e-03   p_joint 1.103636e-02

Joint ci ratio: 6.169296e-02	ci left: 1.137311e-02	ci right 1.209996e-02	k: 3989	n:340000
Cons ci ratio: 1.334238e-01	ci left: 2.363356e-03	ci right 2.704034e-03	k: 860	n:340000
KS ci ratio: 3.797956e-03	ci left: 7.566156e-01	ci right 7.594976e-01	k: 257740	n:340000
TDRD7   340000 perm   130 sec   (2616 perm/sec)   p_kst 7.580588e-01   p_cons 2.529412e-03   p_joint 1.173235e-02

Joint ci ratio: 6.470642e-02	ci left: 1.004123e-02	ci right 1.071548e-02	k: 3631	n:350000
Cons ci ratio: 1.321274e-01	ci left: 2.342788e-03	ci right 2.676962e-03	k: 877	n:350000
KS ci ratio: 3.745306e-03	ci left: 7.564401e-01	ci right 7.592813e-01	k: 265252	n:350000
TDRD7   350000 perm   135 sec   (2586 perm/sec)   p_kst 7.578629e-01   p_cons 2.505714e-03   p_joint 1.037429e-02

Joint ci ratio: 6.120348e-02	ci left: 1.092171e-02	ci right 1.161397e-02	k: 4055	n:360000
Cons ci ratio: 1.297108e-01	ci left: 2.366377e-03	ci right 2.697267e-03	k: 910	n:360000
KS ci ratio: 3.709792e-03	ci left: 7.547800e-01	ci right 7.575881e-01	k: 272227	n:360000
TDRD7   360000 perm   141 sec   (2560 perm/sec)   p_kst 7.561861e-01   p_cons 2.527778e-03   p_joint 1.126389e-02

Joint ci ratio: 6.039761e-02	ci left: 1.091664e-02	ci right 1.159915e-02	k: 4164	n:370000
Cons ci ratio: 1.281730e-01	ci left: 2.359962e-03	ci right 2.685745e-03	k: 932	n:370000
KS ci ratio: 3.658749e-03	ci left: 7.548565e-01	ci right 7.576260e-01	k: 279810	n:370000
TDRD7   370000 perm   146 sec   (2531 perm/sec)   p_kst 7.562432e-01   p_cons 2.518919e-03   p_joint 1.125405e-02

Joint ci ratio: 6.488670e-02	ci left: 9.204364e-03	ci right 9.824203e-03	k: 3614	n:380000
Cons ci ratio: 1.262256e-01	ci left: 2.371746e-03	ci right 2.693809e-03	k: 961	n:380000
KS ci ratio: 3.610582e-03	ci left: 7.548447e-01	ci right 7.575777e-01	k: 287361	n:380000
TDRD7   380000 perm   152 sec   (2502 perm/sec)   p_kst 7.562132e-01   p_cons 2.528947e-03   p_joint 9.510526e-03

Joint ci ratio: 6.574439e-02	ci left: 8.736241e-03	ci right 9.332627e-03	k: 3522	n:390000
Cons ci ratio: 1.246802e-01	ci left: 2.370539e-03	ci right 2.688206e-03	k: 985	n:390000
KS ci ratio: 3.564961e-03	ci left: 7.547619e-01	ci right 7.574599e-01	k: 294884	n:390000
TDRD7   390000 perm   157 sec   (2477 perm/sec)   p_kst 7.561128e-01   p_cons 2.525641e-03   p_joint 9.030769e-03

Joint ci ratio: 6.493855e-02	ci left: 8.734240e-03	ci right 9.322906e-03	k: 3610	n:400000
Cons ci ratio: 1.230680e-01	ci left: 2.374262e-03	ci right 2.688014e-03	k: 1011	n:400000
KS ci ratio: 3.519906e-03	ci left: 7.548012e-01	ci right 7.574651e-01	k: 302454	n:400000
TDRD7   400000 perm   163 sec   (2451 perm/sec)   p_kst 7.561350e-01   p_cons 2.527500e-03   p_joint 9.025000e-03

Joint ci ratio: 6.497300e-02	ci left: 8.513980e-03	ci right 9.088116e-03	k: 3607	n:410000
Cons ci ratio: 1.216933e-01	ci left: 2.370733e-03	ci right 2.680267e-03	k: 1034	n:410000
KS ci ratio: 3.478723e-03	ci left: 7.546041e-01	ci right 7.572362e-01	k: 309928	n:410000
TDRD7   410000 perm   169 sec   (2423 perm/sec)   p_kst 7.559220e-01   p_cons 2.521951e-03   p_joint 8.797561e-03

Joint ci ratio: 6.428265e-02	ci left: 8.493976e-03	ci right 9.060451e-03	k: 3685	n:420000
Cons ci ratio: 1.201928e-01	ci left: 2.374319e-03	ci right 2.680227e-03	k: 1060	n:420000
KS ci ratio: 3.436711e-03	ci left: 7.546576e-01	ci right 7.572579e-01	k: 317503	n:420000
TDRD7   420000 perm   175 sec   (2398 perm/sec)   p_kst 7.559595e-01   p_cons 2.523810e-03   p_joint 8.773810e-03

Joint ci ratio: 6.047491e-02	ci left: 9.384003e-03	ci right 9.971470e-03	k: 4160	n:430000
Cons ci ratio: 1.182027e-01	ci left: 2.400329e-03	ci right 2.704110e-03	k: 1096	n:430000
KS ci ratio: 3.397190e-03	ci left: 7.545992e-01	ci right 7.571694e-01	k: 325031	n:430000
TDRD7   430000 perm   181 sec   (2370 perm/sec)   p_kst 7.558860e-01   p_cons 2.548837e-03   p_joint 9.674419e-03

Joint ci ratio: 6.113010e-02	ci left: 8.975952e-03	ci right 9.544175e-03	k: 4073	n:440000
Cons ci ratio: 1.165665e-01	ci left: 2.414163e-03	ci right 2.715174e-03	k: 1127	n:440000
KS ci ratio: 3.358009e-03	ci left: 7.546530e-01	ci right 7.571936e-01	k: 332607	n:440000
TDRD7   440000 perm   188 sec   (2346 perm/sec)   p_kst 7.559250e-01   p_cons 2.561364e-03   p_joint 9.256818e-03

Joint ci ratio: 6.054681e-02	ci left: 8.949367e-03	ci right 9.510313e-03	k: 4152	n:450000
Cons ci ratio: 1.155978e-01	ci left: 2.401510e-03	ci right 2.698286e-03	k: 1146	n:450000
KS ci ratio: 3.321253e-03	ci left: 7.545821e-01	ci right 7.570946e-01	k: 340128	n:450000
TDRD7   450000 perm   194 sec   (2323 perm/sec)   p_kst 7.558400e-01   p_cons 2.546667e-03   p_joint 9.226667e-03

Joint ci ratio: 5.423735e-02	ci left: 1.092362e-02	ci right 1.153473e-02	k: 5164	n:460000
Cons ci ratio: 1.094575e-01	ci left: 2.628205e-03	ci right 2.934632e-03	k: 1278	n:460000
KS ci ratio: 3.285117e-03	ci left: 7.545776e-01	ci right 7.570627e-01	k: 347678	n:460000
TDRD7   460000 perm   200 sec   (2300 perm/sec)   p_kst 7.558217e-01   p_cons 2.778261e-03   p_joint 1.122609e-02

Joint ci ratio: 5.496395e-02	ci left: 1.041201e-02	ci right 1.100255e-02	k: 5031	n:470000
Cons ci ratio: 1.075387e-01	ci left: 2.667505e-03	ci right 2.972717e-03	k: 1324	n:470000
KS ci ratio: 3.250491e-03	ci left: 7.545329e-01	ci right 7.569916e-01	k: 355209	n:470000
TDRD7   470000 perm   206 sec   (2278 perm/sec)   p_kst 7.557638e-01   p_cons 2.817021e-03   p_joint 1.070426e-02

Joint ci ratio: 5.524260e-02	ci left: 1.009437e-02	ci right 1.066989e-02	k: 4982	n:480000
Cons ci ratio: 1.065782e-01	ci left: 2.660593e-03	ci right 2.962125e-03	k: 1348	n:480000
KS ci ratio: 3.214995e-03	ci left: 7.547135e-01	ci right 7.571459e-01	k: 362847	n:480000
TDRD7   480000 perm   213 sec   (2258 perm/sec)   p_kst 7.559313e-01   p_cons 2.808333e-03   p_joint 1.037917e-02

Joint ci ratio: 5.601444e-02	ci left: 9.618634e-03	ci right 1.017494e-02	k: 4848	n:490000
Cons ci ratio: 1.056817e-01	ci left: 2.651987e-03	ci right 2.949858e-03	k: 1371	n:490000
KS ci ratio: 3.183011e-03	ci left: 7.546109e-01	ci right 7.570187e-01	k: 370350	n:490000
TDRD7   490000 perm   219 sec   (2238 perm/sec)   p_kst 7.558163e-01   p_cons 2.797959e-03   p_joint 9.893878e-03

Joint ci ratio: 5.544557e-02	ci left: 9.623475e-03	ci right 1.017423e-02	k: 4948	n:500000
Cons ci ratio: 1.043954e-01	ci left: 2.665162e-03	ci right 2.960646e-03	k: 1405	n:500000
KS ci ratio: 3.149623e-03	ci left: 7.547870e-01	ci right 7.571700e-01	k: 377990	n:500000
TDRD7   500000 perm   226 sec   (2216 perm/sec)   p_kst 7.559800e-01   p_cons 2.810000e-03   p_joint 9.896000e-03

Joint ci ratio: 5.684784e-02	ci left: 8.974578e-03	ci right 9.501608e-03	k: 4710	n:510000
Cons ci ratio: 1.031910e-01	ci left: 2.675931e-03	ci right 2.968978e-03	k: 1438	n:510000
KS ci ratio: 3.118787e-03	ci left: 7.547756e-01	ci right 7.571352e-01	k: 385538	n:510000
TDRD7   510000 perm   232 sec   (2195 perm/sec)   p_kst 7.559569e-01   p_cons 2.819608e-03   p_joint 9.235294e-03

Joint ci ratio: 5.034809e-02	ci left: 1.123286e-02	ci right 1.181491e-02	k: 5991	n:520000
Cons ci ratio: 1.020968e-01	ci left: 2.682556e-03	ci right 2.973027e-03	k: 1469	n:520000
KS ci ratio: 3.088372e-03	ci left: 7.548206e-01	ci right 7.571573e-01	k: 393115	n:520000
TDRD7   520000 perm   239 sec   (2176 perm/sec)   p_kst 7.559904e-01   p_cons 2.825000e-03   p_joint 1.152115e-02

Joint ci ratio: 5.044311e-02	ci left: 1.098176e-02	ci right 1.155190e-02	k: 5970	n:530000
Cons ci ratio: 1.011043e-01	ci left: 2.685269e-03	ci right 2.973039e-03	k: 1498	n:530000
KS ci ratio: 3.059378e-03	ci left: 7.547979e-01	ci right 7.571125e-01	k: 400657	n:530000
TDRD7   530000 perm   246 sec   (2156 perm/sec)   p_kst 7.559566e-01   p_cons 2.826415e-03   p_joint 1.126415e-02

Joint ci ratio: 4.877818e-02	ci left: 1.153015e-02	ci right 1.210844e-02	k: 6381	n:540000
Cons ci ratio: 1.001403e-01	ci left: 2.687894e-03	ci right 2.973037e-03	k: 1527	n:540000
KS ci ratio: 3.031277e-03	ci left: 7.547650e-01	ci right 7.570582e-01	k: 408193	n:540000
TDRD7   540000 perm   253 sec   (2136 perm/sec)   p_kst 7.559130e-01   p_cons 2.827778e-03   p_joint 1.181667e-02

Joint ci ratio: 4.895451e-02	ci left: 1.124144e-02	ci right 1.180736e-02	k: 6337	n:550000
Cons ci ratio: 9.923518e-02	ci left: 2.688663e-03	ci right 2.971160e-03	k: 1555	n:550000
KS ci ratio: 3.003654e-03	ci left: 7.547680e-01	ci right 7.570402e-01	k: 415748	n:550000
TDRD7   550000 perm   260 sec   (2116 perm/sec)   p_kst 7.559055e-01   p_cons 2.827273e-03   p_joint 1.152182e-02

Outputting figure to mutsig2_images.part000000000173/TDRD7.6_3361_550000_0.75591_0.0028273_0.011522.png
                gene_name: TDRD7
               theta_stop: 0.099 
                    nperm: 550000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.0028 
      ci_cons_bounds_left: 0.0027 
     ci_cons_bounds_right: 0.0030 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 25 percent done.
TET3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.723193e-02	ci left: 2.450955e-01	ci right 2.622482e-01	k: 2536	n:10000
Cons ci ratio: 6.855334e-02	ci left: 2.378802e-01	ci right 2.548678e-01	k: 2463	n:10000
KS ci ratio: 9.059204e-02	ci left: 1.505090e-01	ci right 1.648910e-01	k: 1576	n:10000
TET3   10000 perm   3 sec   (3934 perm/sec)   p_kst 1.576000e-01   p_cons 2.463000e-01   p_joint 2.536000e-01

Outputting figure to mutsig2_images.part000000000173/TET3.6_5019_10000_0.1576_0.2463_0.2536.png
                gene_name: TET3
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 27 percent done.
TEX10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.309272e-02	ci left: 1.435445e-01	ci right 1.576597e-01	k: 1505	n:10000
Cons ci ratio: 9.117616e-02	ci left: 1.488410e-01	ci right 1.631600e-01	k: 1559	n:10000
KS ci ratio: 8.636922e-02	ci left: 1.633724e-01	ci right 1.782199e-01	k: 1707	n:10000
TEX10   10000 perm   2 sec   (4999 perm/sec)   p_kst 1.707000e-01   p_cons 1.559000e-01   p_joint 1.505000e-01

Outputting figure to mutsig2_images.part000000000173/TEX10.6_2859_10000_0.1707_0.1559_0.1505.png
                gene_name: TEX10
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 29 percent done.
TCN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.789283e-02	ci left: 8.200516e-01	ci right 8.349571e-01	k: 8276	n:10000
Cons ci ratio: 1.479197e-02	ci left: 8.687674e-01	ci right 8.818131e-01	k: 8754	n:10000
KS ci ratio: 3.434269e-02	ci left: 5.559172e-01	ci right 5.754445e-01	k: 5657	n:10000
TCN2   10000 perm   2 sec   (6031 perm/sec)   p_kst 5.657000e-01   p_cons 8.754000e-01   p_joint 8.276000e-01

Outputting figure to mutsig2_images.part000000000173/TCN2.5_1320_10000_0.5657_0.8754_0.8276.png
                gene_name: TCN2
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 30 percent done.
TCP11L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.403307e-02	ci left: 2.637906e-01	ci right 2.813421e-01	k: 2725	n:10000
Cons ci ratio: 3.457387e-02	ci left: 5.526098e-01	ci right 5.721538e-01	k: 5624	n:10000
KS ci ratio: 9.572663e-02	ci left: 1.366833e-01	ci right 1.505251e-01	k: 1435	n:10000
TCP11L2   10000 perm   2 sec   (5552 perm/sec)   p_kst 1.435000e-01   p_cons 5.624000e-01   p_joint 2.725000e-01

Outputting figure to mutsig2_images.part000000000173/TCP11L2.5_1596_10000_0.1435_0.5624_0.2725.png
                gene_name: TCP11L2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 32 percent done.
TDRD10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.497068e-02	ci left: 3.277341e-01	ci right 3.463609e-01	k: 3370	n:10000
Cons ci ratio: 9.230038e-02	ci left: 1.457019e-01	ci right 1.599010e-01	k: 1527	n:10000
KS ci ratio: 4.574653e-02	ci left: 4.135897e-01	ci right 4.330550e-01	k: 4233	n:10000
TDRD10   10000 perm   2 sec   (6145 perm/sec)   p_kst 4.233000e-01   p_cons 1.527000e-01   p_joint 3.370000e-01

Outputting figure to mutsig2_images.part000000000173/TDRD10.5_1182_10000_0.4233_0.1527_0.337.png
                gene_name: TDRD10
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 33 percent done.
TECRL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.304204e-02	ci left: 7.345175e-01	ci right 7.517407e-01	k: 7432	n:10000
Cons ci ratio: 1.583820e-02	ci left: 8.527383e-01	ci right 8.664514e-01	k: 8597	n:10000
KS ci ratio: 2.807683e-02	ci left: 6.515256e-01	ci right 6.701806e-01	k: 6609	n:10000
TECRL   10000 perm   2 sec   (6117 perm/sec)   p_kst 6.609000e-01   p_cons 8.597000e-01   p_joint 7.432000e-01

Outputting figure to mutsig2_images.part000000000173/TECRL.5_1140_10000_0.6609_0.8597_0.7432.png
                gene_name: TECRL
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 35 percent done.
TEKT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.935483e-01	ci left: 3.557635e-02	ci right 4.329490e-02	k: 393	n:10000
Cons ci ratio: 1.773593e-02	ci left: 8.225936e-01	ci right 8.374136e-01	k: 8301	n:10000
KS ci ratio: 2.816585e-01	ci left: 1.632191e-02	ci right 2.176339e-02	k: 189	n:10000
TEKT5   10000 perm   2 sec   (5845 perm/sec)   p_kst 1.890000e-02   p_cons 8.301000e-01   p_joint 3.930000e-02

Joint ci ratio: 1.135347e-01	ci left: 5.304786e-02	ci right 5.948191e-02	k: 1124	n:20000
Cons ci ratio: 1.243830e-02	ci left: 8.271503e-01	ci right 8.375529e-01	k: 16648	n:20000
KS ci ratio: 1.872141e-01	ci left: 1.943921e-02	ci right 2.350157e-02	k: 428	n:20000
TEKT5   20000 perm   4 sec   (5174 perm/sec)   p_kst 2.140000e-02   p_cons 8.324000e-01   p_joint 5.620000e-02

Joint ci ratio: 1.075985e-01	ci left: 4.008265e-02	ci right 4.467317e-02	k: 1270	n:30000
Cons ci ratio: 1.050797e-02	ci left: 8.182967e-01	ci right 8.269740e-01	k: 24680	n:30000
KS ci ratio: 1.555373e-01	ci left: 1.911875e-02	ci right 2.237499e-02	k: 621	n:30000
TEKT5   30000 perm   6 sec   (4946 perm/sec)   p_kst 2.070000e-02   p_cons 8.226667e-01   p_joint 4.233333e-02

Joint ci ratio: 9.060815e-02	ci left: 4.267108e-02	ci right 4.674535e-02	k: 1787	n:40000
Cons ci ratio: 9.054606e-03	ci left: 8.203581e-01	ci right 8.278448e-01	k: 32965	n:40000
KS ci ratio: 1.347274e-01	ci left: 1.932710e-02	ci right 2.214308e-02	k: 828	n:40000
TEKT5   40000 perm   8 sec   (4759 perm/sec)   p_kst 2.070000e-02   p_cons 8.241250e-01   p_joint 4.467500e-02

Joint ci ratio: 7.888673e-02	ci left: 4.520053e-02	ci right 4.893228e-02	k: 2352	n:50000
Cons ci ratio: 7.965494e-03	ci left: 8.255498e-01	ci right 8.321719e-01	k: 41444	n:50000
KS ci ratio: 1.196957e-01	ci left: 1.974166e-02	ci right 2.227438e-02	k: 1049	n:50000
TEKT5   50000 perm   11 sec   (4528 perm/sec)   p_kst 2.098000e-02   p_cons 8.288800e-01   p_joint 4.704000e-02

Joint ci ratio: 7.578893e-02	ci left: 4.106334e-02	ci right 4.431441e-02	k: 2560	n:60000
Cons ci ratio: 7.291432e-03	ci left: 8.250569e-01	ci right 8.311113e-01	k: 49686	n:60000
KS ci ratio: 1.101633e-01	ci left: 1.952700e-02	ci right 2.181969e-02	k: 1239	n:60000
TEKT5   60000 perm   13 sec   (4450 perm/sec)   p_kst 2.065000e-02   p_cons 8.281000e-01   p_joint 4.266667e-02

Joint ci ratio: 6.768250e-02	ci left: 4.417874e-02	ci right 4.728763e-02	k: 3200	n:70000
Cons ci ratio: 7.022266e-03	ci left: 8.136842e-01	ci right 8.194324e-01	k: 57160	n:70000
KS ci ratio: 1.017643e-01	ci left: 1.969981e-02	ci right 2.182589e-02	k: 1452	n:70000
TEKT5   70000 perm   16 sec   (4329 perm/sec)   p_kst 2.074286e-02   p_cons 8.165714e-01   p_joint 4.571429e-02

Joint ci ratio: 6.517472e-02	ci left: 4.185074e-02	ci right 4.468251e-02	k: 3460	n:80000
Cons ci ratio: 6.556854e-03	ci left: 8.144160e-01	ci right 8.197860e-01	k: 65369	n:80000
KS ci ratio: 9.442736e-02	ci left: 2.009083e-02	ci right 2.209411e-02	k: 1686	n:80000
TEKT5   80000 perm   19 sec   (4212 perm/sec)   p_kst 2.107500e-02   p_cons 8.171125e-01   p_joint 4.325000e-02

Outputting figure to mutsig2_images.part000000000173/TEKT5.5_1486_80000_0.021075_0.81711_0.04325.png
                gene_name: TEKT5
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.043 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.045 

Current progress: 37 percent done.
TET2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.649439e-02	ci left: 2.492482e-01	ci right 2.664931e-01	k: 2578	n:10000
Cons ci ratio: 1.776735e-02	ci left: 8.220852e-01	ci right 8.369224e-01	k: 8296	n:10000
KS ci ratio: 9.699204e-02	ci left: 1.335486e-01	ci right 1.472617e-01	k: 1403	n:10000
TET2   10000 perm   3 sec   (3487 perm/sec)   p_kst 1.403000e-01   p_cons 8.296000e-01   p_joint 2.578000e-01

Outputting figure to mutsig2_images.part000000000173/TET2.5_6134_10000_0.1403_0.8296_0.2578.png
                gene_name: TET2
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 38 percent done.
TEX13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.210993e-02	ci left: 2.198072e-01	ci right 2.363514e-01	k: 2280	n:10000
Cons ci ratio: 4.395665e-02	ci left: 4.331321e-01	ci right 4.527012e-01	k: 4429	n:10000
KS ci ratio: 9.800946e-02	ci left: 1.311004e-01	ci right 1.447113e-01	k: 1378	n:10000
TEX13A   10000 perm   2 sec   (5382 perm/sec)   p_kst 1.378000e-01   p_cons 4.429000e-01   p_joint 2.280000e-01

Outputting figure to mutsig2_images.part000000000173/TEX13A.5_1240_10000_0.1378_0.4429_0.228.png
                gene_name: TEX13A
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 40 percent done.
TCTE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.675392e-02	ci left: 4.030273e-01	ci right 4.224236e-01	k: 4127	n:10000
Cons ci ratio: 1.490694e-02	ci left: 8.670303e-01	ci right 8.801512e-01	k: 8737	n:10000
KS ci ratio: 8.051746e-02	ci left: 1.838286e-01	ci right 1.993515e-01	k: 1915	n:10000
TCTE1   10000 perm   2 sec   (5676 perm/sec)   p_kst 1.915000e-01   p_cons 8.737000e-01   p_joint 4.127000e-01

Outputting figure to mutsig2_images.part000000000173/TCTE1.4_1522_10000_0.1915_0.8737_0.4127.png
                gene_name: TCTE1
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 41 percent done.
TDO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.682287e-02	ci left: 8.372473e-01	ci right 8.515515e-01	k: 8445	n:10000
Cons ci ratio: 2.123674e-02	ci left: 7.647622e-01	ci right 7.812784e-01	k: 7731	n:10000
KS ci ratio: 3.508232e-02	ci left: 5.453952e-01	ci right 5.649726e-01	k: 5552	n:10000
TDO2   10000 perm   1 sec   (6685 perm/sec)   p_kst 5.552000e-01   p_cons 7.731000e-01   p_joint 8.445000e-01

Outputting figure to mutsig2_images.part000000000173/TDO2.4_1269_10000_0.5552_0.7731_0.8445.png
                gene_name: TDO2
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 43 percent done.
TEAD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.710281e-02	ci left: 3.994411e-01	ci right 4.188118e-01	k: 4091	n:10000
Cons ci ratio: 4.204025e-02	ci left: 4.551856e-01	ci right 4.748348e-01	k: 4650	n:10000
KS ci ratio: 5.945362e-02	ci left: 2.939022e-01	ci right 3.120127e-01	k: 3029	n:10000
TEAD2   10000 perm   2 sec   (5808 perm/sec)   p_kst 3.029000e-01   p_cons 4.650000e-01   p_joint 4.091000e-01

Outputting figure to mutsig2_images.part000000000173/TEAD2.4_1388_10000_0.3029_0.465_0.4091.png
                gene_name: TEAD2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 44 percent done.
TCP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.178682e-02	ci left: 7.555514e-01	ci right 7.722946e-01	k: 7640	n:10000
Cons ci ratio: 4.594381e-02	ci left: 4.114968e-01	ci right 4.309491e-01	k: 4212	n:10000
KS ci ratio: 2.740949e-02	ci left: 6.622964e-01	ci right 6.808035e-01	k: 6716	n:10000
TCP11   10000 perm   2 sec   (6102 perm/sec)   p_kst 6.716000e-01   p_cons 4.212000e-01   p_joint 7.640000e-01

Outputting figure to mutsig2_images.part000000000173/TCP11.3_1645_10000_0.6716_0.4212_0.764.png
                gene_name: TCP11
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 46 percent done.
TCTA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.525351e-02	ci left: 4.188726e-01	ci right 4.383690e-01	k: 4286	n:10000
Cons ci ratio: 4.997652e-02	ci left: 3.712686e-01	ci right 3.904009e-01	k: 3808	n:10000
KS ci ratio: 4.938832e-02	ci left: 3.768407e-01	ci right 3.960255e-01	k: 3864	n:10000
TCTA   10000 perm   1 sec   (6884 perm/sec)   p_kst 3.864000e-01   p_cons 3.808000e-01   p_joint 4.286000e-01

Outputting figure to mutsig2_images.part000000000173/TCTA.3_324_10000_0.3864_0.3808_0.4286.png
                gene_name: TCTA
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 48 percent done.
TCTEX1D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.672501e-02	ci left: 4.033262e-01	ci right 4.227245e-01	k: 4130	n:10000
Cons ci ratio: 6.054087e-02	ci left: 2.863697e-01	ci right 3.043496e-01	k: 2953	n:10000
KS ci ratio: 5.271225e-02	ci left: 3.466085e-01	ci right 3.654755e-01	k: 3560	n:10000
TCTEX1D2   10000 perm   1 sec   (7206 perm/sec)   p_kst 3.560000e-01   p_cons 2.953000e-01   p_joint 4.130000e-01

Outputting figure to mutsig2_images.part000000000173/TCTEX1D2.3_449_10000_0.356_0.2953_0.413.png
                gene_name: TCTEX1D2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 49 percent done.
TEAD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.168825e-01	ci left: 9.516088e-02	ci right 1.070726e-01	k: 1010	n:10000
Cons ci ratio: 2.336799e-02	ci left: 7.290610e-01	ci right 7.464003e-01	k: 7378	n:10000
KS ci ratio: 2.521293e-01	ci left: 2.062036e-02	ci right 2.666153e-02	k: 235	n:10000
TEAD4   10000 perm   2 sec   (5783 perm/sec)   p_kst 2.350000e-02   p_cons 7.378000e-01   p_joint 1.010000e-01

Joint ci ratio: 5.689846e-02	ci left: 1.863141e-01	ci right 1.972756e-01	k: 3835	n:20000
Cons ci ratio: 1.667124e-02	ci left: 7.281700e-01	ci right 7.404618e-01	k: 14687	n:20000
KS ci ratio: 1.732762e-01	ci left: 2.278476e-02	ci right 2.715484e-02	k: 498	n:20000
TEAD4   20000 perm   4 sec   (5110 perm/sec)   p_kst 2.490000e-02   p_cons 7.343500e-01   p_joint 1.917500e-01

Joint ci ratio: 8.315383e-02	ci left: 6.609174e-02	ci right 7.185874e-02	k: 2068	n:30000
Cons ci ratio: 1.354523e-02	ci left: 7.312409e-01	ci right 7.412467e-01	k: 22088	n:30000
KS ci ratio: 1.414321e-01	ci left: 2.319840e-02	ci right 2.676107e-02	k: 748	n:30000
TEAD4   30000 perm   6 sec   (4901 perm/sec)   p_kst 2.493333e-02   p_cons 7.362667e-01   p_joint 6.893333e-02

Joint ci ratio: 7.352296e-02	ci left: 6.390537e-02	ci right 6.880782e-02	k: 2653	n:40000
Cons ci ratio: 1.176955e-02	ci left: 7.306204e-01	ci right 7.392954e-01	k: 29399	n:40000
KS ci ratio: 1.224005e-01	ci left: 2.346781e-02	ci right 2.655168e-02	k: 999	n:40000
TEAD4   40000 perm   8 sec   (4747 perm/sec)   p_kst 2.497500e-02   p_cons 7.349750e-01   p_joint 6.632500e-02

Joint ci ratio: 5.758398e-02	ci left: 8.237230e-02	ci right 8.727602e-02	k: 4240	n:50000
Cons ci ratio: 1.055175e-02	ci left: 7.301637e-01	ci right 7.379291e-01	k: 36703	n:50000
KS ci ratio: 1.096587e-01	ci left: 2.355184e-02	ci right 2.630370e-02	k: 1245	n:50000
TEAD4   50000 perm   11 sec   (4627 perm/sec)   p_kst 2.490000e-02   p_cons 7.340600e-01   p_joint 8.480000e-02

Joint ci ratio: 5.558949e-02	ci left: 7.440186e-02	ci right 7.867254e-02	k: 4591	n:60000
Cons ci ratio: 9.613730e-03	ci left: 7.312649e-01	ci right 7.383457e-01	k: 44089	n:60000
KS ci ratio: 1.002144e-01	ci left: 2.361911e-02	ci right 2.612714e-02	k: 1491	n:60000
TEAD4   60000 perm   13 sec   (4518 perm/sec)   p_kst 2.485000e-02   p_cons 7.348167e-01   p_joint 7.651667e-02

Joint ci ratio: 5.280301e-02	ci left: 7.105528e-02	ci right 7.492306e-02	k: 5108	n:70000
Cons ci ratio: 8.888574e-03	ci left: 7.320580e-01	ci right 7.386082e-01	k: 51474	n:70000
KS ci ratio: 9.277152e-02	ci left: 2.371638e-02	ci right 2.603752e-02	k: 1740	n:70000
TEAD4   70000 perm   16 sec   (4406 perm/sec)   p_kst 2.485714e-02   p_cons 7.353429e-01   p_joint 7.297143e-02

Outputting figure to mutsig2_images.part000000000173/TEAD4.3_1349_70000_0.024857_0.73534_0.072971.png
                gene_name: TEAD4
               theta_stop: 0.093 
                    nperm: 70000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.075 

Current progress: 51 percent done.
TEC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.359516e-02	ci left: 2.128012e-01	ci right 2.291616e-01	k: 2209	n:10000
Cons ci ratio: 7.088296e-02	ci left: 2.258292e-01	ci right 2.425259e-01	k: 2341	n:10000
KS ci ratio: 7.803245e-02	ci left: 1.935775e-01	ci right 2.093968e-01	k: 2014	n:10000
TEC   10000 perm   2 sec   (5377 perm/sec)   p_kst 2.014000e-01   p_cons 2.341000e-01   p_joint 2.209000e-01

Outputting figure to mutsig2_images.part000000000173/TEC.3_1964_10000_0.2014_0.2341_0.2209.png
                gene_name: TEC
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 52 percent done.
TECPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.024244e-02	ci left: 3.687815e-01	ci right 3.878894e-01	k: 3783	n:10000
Cons ci ratio: 3.977843e-02	ci left: 4.827546e-01	ci right 5.024497e-01	k: 4926	n:10000
KS ci ratio: 8.661395e-02	ci left: 1.625864e-01	ci right 1.774064e-01	k: 1699	n:10000
TECPR2   10000 perm   2 sec   (4678 perm/sec)   p_kst 1.699000e-01   p_cons 4.926000e-01   p_joint 3.783000e-01

Outputting figure to mutsig2_images.part000000000173/TECPR2.3_4327_10000_0.1699_0.4926_0.3783.png
                gene_name: TECPR2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 54 percent done.
TECTB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.721712e-02	ci left: 6.654179e-01	ci right 6.838802e-01	k: 6747	n:10000
Cons ci ratio: 1.224168e-02	ci left: 9.054543e-01	ci right 9.167049e-01	k: 9112	n:10000
KS ci ratio: 4.753408e-02	ci left: 3.950588e-01	ci right 4.143968e-01	k: 4047	n:10000
TECTB   10000 perm   1 sec   (6788 perm/sec)   p_kst 4.047000e-01   p_cons 9.112000e-01   p_joint 6.747000e-01

Outputting figure to mutsig2_images.part000000000173/TECTB.3_1030_10000_0.4047_0.9112_0.6747.png
                gene_name: TECTB
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 56 percent done.
TEKT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.740994e-02	ci left: 2.441069e-01	ci right 2.612374e-01	k: 2526	n:10000
Cons ci ratio: 2.232405e-02	ci left: 7.465480e-01	ci right 7.635031e-01	k: 7551	n:10000
KS ci ratio: 1.017651e-01	ci left: 1.225867e-01	ci right 1.358301e-01	k: 1291	n:10000
TEKT1   10000 perm   2 sec   (6060 perm/sec)   p_kst 1.291000e-01   p_cons 7.551000e-01   p_joint 2.526000e-01

Joint ci ratio: 4.340787e-02	ci left: 2.833198e-01	ci right 2.959414e-01	k: 5792	n:20000
Cons ci ratio: 1.621655e-02	ci left: 7.388990e-01	ci right 7.510297e-01	k: 14900	n:20000
KS ci ratio: 7.186426e-02	ci left: 1.248267e-01	ci right 1.341813e-01	k: 2589	n:20000
TEKT1   20000 perm   4 sec   (5410 perm/sec)   p_kst 1.294500e-01   p_cons 7.450000e-01   p_joint 2.896000e-01

Outputting figure to mutsig2_images.part000000000173/TEKT1.3_1285_20000_0.12945_0.745_0.2896.png
                gene_name: TEKT1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 57 percent done.
TEKT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.312859e-02	ci left: 3.430310e-01	ci right 3.618550e-01	k: 3524	n:10000
KS ci ratio: 1.396686e-02	ci left: 8.810413e-01	ci right 8.935320e-01	k: 8874	n:10000
TEKT3   10000 perm   2 sec   (5809 perm/sec)   p_kst 8.874000e-01   p_cons 3.524000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TEKT3.3_1501_10000_0.8874_0.3524_1.png
                gene_name: TEKT3
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 59 percent done.
TEKT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.944204e-02	ci left: 6.297987e-01	ci right 6.487201e-01	k: 6393	n:10000
KS ci ratio: 3.473567e-02	ci left: 5.503049e-01	ci right 5.698601e-01	k: 5601	n:10000
TEKT4   10000 perm   2 sec   (5769 perm/sec)   p_kst 5.601000e-01   p_cons 6.393000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TEKT4.3_1332_10000_0.5601_0.6393_1.png
                gene_name: TEKT4
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
TESK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.733377e-02	ci left: 5.144559e-01	ci right 5.341300e-01	k: 5243	n:10000
KS ci ratio: 2.656233e-02	ci left: 6.760950e-01	ci right 6.943970e-01	k: 6853	n:10000
TESK2   10000 perm   2 sec   (5678 perm/sec)   p_kst 6.853000e-01   p_cons 5.243000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TESK2.3_1756_10000_0.6853_0.5243_1.png
                gene_name: TESK2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
TEX9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.093700e-01	ci left: 1.335536e-02	ci right 1.833248e-02	k: 157	n:10000
Cons ci ratio: 7.662992e-02	ci left: 1.993910e-01	ci right 2.153799e-01	k: 2073	n:10000
KS ci ratio: 2.589536e-01	ci left: 1.949575e-02	ci right 2.538701e-02	k: 223	n:10000
TEX9   10000 perm   2 sec   (6216 perm/sec)   p_kst 2.230000e-02   p_cons 2.073000e-01   p_joint 1.570000e-02

Joint ci ratio: 1.342244e-01	ci left: 3.814864e-02	ci right 4.368584e-02	k: 817	n:20000
Cons ci ratio: 5.436813e-02	ci left: 2.006605e-01	ci right 2.119250e-01	k: 4125	n:20000
KS ci ratio: 1.804519e-01	ci left: 2.096705e-02	ci right 2.517319e-02	k: 460	n:20000
TEX9   20000 perm   4 sec   (5435 perm/sec)   p_kst 2.300000e-02   p_cons 2.062500e-01   p_joint 4.085000e-02

Joint ci ratio: 1.568295e-01	ci left: 1.879820e-02	ci right 2.202895e-02	k: 611	n:30000
Cons ci ratio: 4.417583e-02	ci left: 2.032867e-01	ci right 2.125033e-01	k: 6236	n:30000
KS ci ratio: 1.466356e-01	ci left: 2.155829e-02	ci right 2.500155e-02	k: 697	n:30000
TEX9   30000 perm   6 sec   (5142 perm/sec)   p_kst 2.323333e-02   p_cons 2.078667e-01   p_joint 2.036667e-02

Joint ci ratio: 1.174358e-01	ci left: 2.550637e-02	ci right 2.871277e-02	k: 1083	n:40000
Cons ci ratio: 3.928879e-02	ci left: 1.953450e-01	ci right 2.031987e-01	k: 7970	n:40000
KS ci ratio: 1.276712e-01	ci left: 2.155318e-02	ci right 2.451662e-02	k: 920	n:40000
TEX9   40000 perm   8 sec   (4964 perm/sec)   p_kst 2.300000e-02   p_cons 1.992500e-01   p_joint 2.707500e-02

Joint ci ratio: 1.284703e-01	ci left: 1.710445e-02	ci right 1.947194e-02	k: 913	n:50000
Cons ci ratio: 3.497832e-02	ci left: 1.972365e-01	ci right 2.042783e-01	k: 10037	n:50000
KS ci ratio: 1.143582e-01	ci left: 2.164549e-02	ci right 2.429029e-02	k: 1147	n:50000
TEX9   50000 perm   10 sec   (4809 perm/sec)   p_kst 2.294000e-02   p_cons 2.007400e-01   p_joint 1.826000e-02

Joint ci ratio: 8.780527e-02	ci left: 3.073657e-02	ci right 3.357559e-02	k: 1928	n:60000
Cons ci ratio: 3.194830e-02	ci left: 1.973689e-01	ci right 2.037935e-01	k: 12034	n:60000
KS ci ratio: 1.048078e-01	ci left: 2.158796e-02	ci right 2.399184e-02	k: 1366	n:60000
TEX9   60000 perm   13 sec   (4682 perm/sec)   p_kst 2.276667e-02   p_cons 2.005667e-01   p_joint 3.213333e-02

Joint ci ratio: 6.718907e-02	ci left: 4.481125e-02	ci right 4.794078e-02	k: 3245	n:70000
Cons ci ratio: 2.956501e-02	ci left: 1.977524e-01	ci right 2.037010e-01	k: 14050	n:70000
KS ci ratio: 9.696594e-02	ci left: 2.170692e-02	ci right 2.393288e-02	k: 1596	n:70000
TEX9   70000 perm   15 sec   (4566 perm/sec)   p_kst 2.280000e-02   p_cons 2.007143e-01   p_joint 4.635714e-02

Outputting figure to mutsig2_images.part000000000173/TEX9.3_1224_70000_0.0228_0.20071_0.046357.png
                gene_name: TEX9
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.045 
    ci_joint_bounds_right: 0.048 

Current progress: 63 percent done.
TCL1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.352525e-02	ci left: 5.677472e-01	ci right 5.872076e-01	k: 5775	n:10000
Cons ci ratio: 2.937825e-02	ci left: 6.308041e-01	ci right 6.497141e-01	k: 6403	n:10000
KS ci ratio: 1.144422e-01	ci left: 9.895988e-02	ci right 1.110713e-01	k: 1049	n:10000
TCL1A   10000 perm   1 sec   (7021 perm/sec)   p_kst 1.049000e-01   p_cons 6.403000e-01   p_joint 5.775000e-01

Joint ci ratio: 3.708287e-02	ci left: 3.517501e-01	ci right 3.650910e-01	k: 7168	n:20000
Cons ci ratio: 2.081960e-02	ci left: 6.326000e-01	ci right 6.459595e-01	k: 12786	n:20000
KS ci ratio: 8.049680e-02	ci left: 1.017171e-01	ci right 1.102979e-01	k: 2119	n:20000
TCL1A   20000 perm   3 sec   (6052 perm/sec)   p_kst 1.059500e-01   p_cons 6.393000e-01   p_joint 3.584000e-01

Outputting figure to mutsig2_images.part000000000173/TCL1A.2_357_20000_0.10595_0.6393_0.3584.png
                gene_name: TCL1A
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 65 percent done.
TCL1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.258349e-02	ci left: 7.421999e-01	ci right 7.592538e-01	k: 7508	n:10000
Cons ci ratio: 4.567166e-02	ci left: 4.143870e-01	ci right 4.338572e-01	k: 4241	n:10000
KS ci ratio: 9.526235e-02	ci left: 1.378591e-01	ci right 1.517485e-01	k: 1447	n:10000
TCL1B   10000 perm   1 sec   (7015 perm/sec)   p_kst 1.447000e-01   p_cons 4.241000e-01   p_joint 7.508000e-01

Outputting figure to mutsig2_images.part000000000173/TCL1B.2_399_10000_0.1447_0.4241_0.7508.png
                gene_name: TCL1B
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 67 percent done.
TCP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.899674e-02	ci left: 6.368375e-01	ci right 6.556772e-01	k: 6463	n:10000
KS ci ratio: 4.603814e-02	ci left: 4.105002e-01	ci right 4.299463e-01	k: 4202	n:10000
TCP1   10000 perm   2 sec   (6198 perm/sec)   p_kst 4.202000e-01   p_cons 6.463000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TCP1.2_1719_10000_0.4202_0.6463_1.png
                gene_name: TCP1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
TCP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.259752e-02	ci left: 3.476023e-01	ci right 3.664811e-01	k: 3570	n:10000
Cons ci ratio: 4.096618e-02	ci left: 4.680674e-01	ci right 4.877455e-01	k: 4779	n:10000
KS ci ratio: 1.018103e-01	ci left: 1.224889e-01	ci right 1.357280e-01	k: 1290	n:10000
TCP10   10000 perm   2 sec   (6607 perm/sec)   p_kst 1.290000e-01   p_cons 4.779000e-01   p_joint 3.570000e-01

Joint ci ratio: 4.147963e-02	ci left: 3.022512e-01	ci right 3.151045e-01	k: 6173	n:20000
Cons ci ratio: 2.763073e-02	ci left: 4.945957e-01	ci right 5.085038e-01	k: 10031	n:20000
KS ci ratio: 7.246001e-02	ci left: 1.230054e-01	ci right 1.323032e-01	k: 2552	n:20000
TCP10   20000 perm   4 sec   (5706 perm/sec)   p_kst 1.276000e-01   p_cons 5.015500e-01   p_joint 3.086500e-01

Outputting figure to mutsig2_images.part000000000173/TCP10.2_1009_20000_0.1276_0.50155_0.30865.png
                gene_name: TCP10
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 70 percent done.
TCTEX1D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.512443e-02	ci left: 4.202683e-01	ci right 4.397725e-01	k: 4300	n:10000
Cons ci ratio: 7.204855e-02	ci left: 2.201034e-01	ci right 2.366552e-01	k: 2283	n:10000
KS ci ratio: 4.572780e-02	ci left: 4.137890e-01	ci right 4.332556e-01	k: 4235	n:10000
TCTEX1D1   10000 perm   1 sec   (6894 perm/sec)   p_kst 4.235000e-01   p_cons 2.283000e-01   p_joint 4.300000e-01

Outputting figure to mutsig2_images.part000000000173/TCTEX1D1.2_556_10000_0.4235_0.2283_0.43.png
                gene_name: TCTEX1D1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 71 percent done.
TCTN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.665240e-01	ci left: 4.811345e-02	ci right 5.694952e-02	k: 524	n:10000
Cons ci ratio: 3.512569e-01	ci left: 1.014137e-02	ci right 1.454954e-02	k: 122	n:10000
KS ci ratio: 4.258860e-01	ci left: 6.616170e-03	ci right 1.027885e-02	k: 83	n:10000
TCTN2   10000 perm   2 sec   (5731 perm/sec)   p_kst 8.300000e-03   p_cons 1.220000e-02   p_joint 5.240000e-02

Joint ci ratio: 1.432265e-01	ci left: 3.350911e-02	ci right 3.872688e-02	k: 721	n:20000
Cons ci ratio: 2.415168e-01	ci left: 1.142923e-02	ci right 1.461469e-02	k: 259	n:20000
KS ci ratio: 2.916733e-01	ci left: 7.645156e-03	ci right 1.030055e-02	k: 178	n:20000
TCTN2   20000 perm   4 sec   (5062 perm/sec)   p_kst 8.900000e-03   p_cons 1.295000e-02   p_joint 3.605000e-02

Joint ci ratio: 2.039269e-01	ci left: 1.092521e-02	ci right 1.343725e-02	k: 364	n:30000
Cons ci ratio: 2.008844e-01	ci left: 1.127349e-02	ci right 1.382221e-02	k: 375	n:30000
KS ci ratio: 2.429929e-01	ci left: 7.554950e-03	ci right 9.675195e-03	k: 257	n:30000
TCTN2   30000 perm   6 sec   (4836 perm/sec)   p_kst 8.566667e-03   p_cons 1.250000e-02   p_joint 1.213333e-02

Joint ci ratio: 5.330776e-01	ci left: 9.926686e-04	ci right 1.732779e-03	k: 53	n:40000
Cons ci ratio: 1.745604e-01	ci left: 1.136245e-02	ci right 1.355918e-02	k: 497	n:40000
KS ci ratio: 2.139160e-01	ci left: 7.434246e-03	ci right 9.238224e-03	k: 332	n:40000
TCTN2   40000 perm   9 sec   (4645 perm/sec)   p_kst 8.300000e-03   p_cons 1.242500e-02   p_joint 1.325000e-03

Joint ci ratio: 1.811333e-01	ci left: 8.439034e-03	ci right 1.013867e-02	k: 463	n:50000
Cons ci ratio: 1.554381e-01	ci left: 1.158300e-02	ci right 1.355419e-02	k: 627	n:50000
KS ci ratio: 1.869118e-01	ci left: 7.904622e-03	ci right 9.553176e-03	k: 435	n:50000
TCTN2   50000 perm   11 sec   (4509 perm/sec)   p_kst 8.700000e-03   p_cons 1.254000e-02   p_joint 9.260000e-03

Joint ci ratio: 2.238855e-01	ci left: 4.514274e-03	ci right 5.667729e-03	k: 304	n:60000
Cons ci ratio: 1.421436e-01	ci left: 1.162632e-02	ci right 1.342130e-02	k: 750	n:60000
KS ci ratio: 1.701679e-01	ci left: 8.020312e-03	ci right 9.527780e-03	k: 525	n:60000
TCTN2   60000 perm   14 sec   (4369 perm/sec)   p_kst 8.750000e-03   p_cons 1.250000e-02   p_joint 5.066667e-03

Joint ci ratio: 2.087074e-01	ci left: 4.490952e-03	ci right 5.550718e-03	k: 350	n:70000
Cons ci ratio: 1.316123e-01	ci left: 1.169007e-02	ci right 1.335071e-02	k: 875	n:70000
KS ci ratio: 1.573726e-01	ci left: 8.093957e-03	ci right 9.490075e-03	k: 614	n:70000
TCTN2   70000 perm   16 sec   (4250 perm/sec)   p_kst 8.771429e-03   p_cons 1.250000e-02   p_joint 5.000000e-03

Joint ci ratio: 2.603843e-01	ci left: 2.457407e-03	ci right 3.204372e-03	k: 225	n:80000
Cons ci ratio: 1.228108e-01	ci left: 1.180218e-02	ci right 1.335847e-02	k: 1005	n:80000
KS ci ratio: 1.483692e-01	ci left: 8.007889e-03	ci right 9.303121e-03	k: 691	n:80000
TCTN2   80000 perm   19 sec   (4151 perm/sec)   p_kst 8.637500e-03   p_cons 1.256250e-02   p_joint 2.812500e-03

Joint ci ratio: 2.121887e-01	ci left: 3.376969e-03	ci right 4.188864e-03	k: 339	n:90000
Cons ci ratio: 1.171979e-01	ci left: 1.155773e-02	ci right 1.300729e-02	k: 1104	n:90000
KS ci ratio: 1.398387e-01	ci left: 8.049970e-03	ci right 9.270905e-03	k: 778	n:90000
TCTN2   90000 perm   22 sec   (4047 perm/sec)   p_kst 8.644444e-03   p_cons 1.226667e-02   p_joint 3.766667e-03

Joint ci ratio: 1.738229e-01	ci left: 4.620073e-03	ci right 5.509007e-03	k: 505	n:100000
Cons ci ratio: 1.114958e-01	ci left: 1.152878e-02	ci right 1.289973e-02	k: 1220	n:100000
KS ci ratio: 1.330162e-01	ci left: 8.036991e-03	ci right 9.191782e-03	k: 860	n:100000
TCTN2   100000 perm   25 sec   (3986 perm/sec)   p_kst 8.600000e-03   p_cons 1.220000e-02   p_joint 5.050000e-03

Joint ci ratio: 2.226866e-01	ci left: 2.496364e-03	ci right 3.130302e-03	k: 308	n:110000
Cons ci ratio: 1.059920e-01	ci left: 1.163043e-02	ci right 1.294093e-02	k: 1350	n:110000
KS ci ratio: 1.260298e-01	ci left: 8.168445e-03	ci right 9.275873e-03	k: 958	n:110000
TCTN2   110000 perm   28 sec   (3924 perm/sec)   p_kst 8.709091e-03   p_cons 1.227273e-02   p_joint 2.800000e-03

Joint ci ratio: 1.935001e-01	ci left: 3.078534e-03	ci right 3.745820e-03	k: 408	n:120000
Cons ci ratio: 1.016830e-01	ci left: 1.161090e-02	ci right 1.286284e-02	k: 1467	n:120000
KS ci ratio: 1.196976e-01	ci left: 8.327823e-03	ci right 9.396115e-03	k: 1062	n:120000
TCTN2   120000 perm   31 sec   (3861 perm/sec)   p_kst 8.850000e-03   p_cons 1.222500e-02   p_joint 3.400000e-03

Joint ci ratio: 1.887256e-01	ci left: 2.995522e-03	ci right 3.626955e-03	k: 429	n:130000
Cons ci ratio: 9.868282e-02	ci left: 1.140015e-02	ci right 1.259099e-02	k: 1558	n:130000
KS ci ratio: 1.145303e-01	ci left: 8.419012e-03	ci right 9.449226e-03	k: 1160	n:130000
TCTN2   130000 perm   34 sec   (3804 perm/sec)   p_kst 8.923077e-03   p_cons 1.198462e-02   p_joint 3.300000e-03

Joint ci ratio: 1.834729e-01	ci left: 2.951803e-03	ci right 3.554776e-03	k: 454	n:140000
Cons ci ratio: 9.500509e-02	ci left: 1.144316e-02	ci right 1.259147e-02	k: 1681	n:140000
KS ci ratio: 1.097156e-01	ci left: 8.539711e-03	ci right 9.537925e-03	k: 1264	n:140000
TCTN2   140000 perm   37 sec   (3747 perm/sec)   p_kst 9.028571e-03   p_cons 1.200714e-02   p_joint 3.242857e-03

Joint ci ratio: 1.662365e-01	ci left: 3.386258e-03	ci right 4.006503e-03	k: 553	n:150000
Cons ci ratio: 9.202021e-02	ci left: 1.140297e-02	ci right 1.250935e-02	k: 1792	n:150000
KS ci ratio: 1.060489e-01	ci left: 8.547724e-03	ci right 9.511398e-03	k: 1353	n:150000
TCTN2   150000 perm   41 sec   (3685 perm/sec)   p_kst 9.020000e-03   p_cons 1.194667e-02   p_joint 3.686667e-03

Joint ci ratio: 1.602696e-01	ci left: 3.426400e-03	ci right 4.029303e-03	k: 595	n:160000
Cons ci ratio: 8.866597e-02	ci left: 1.153333e-02	ci right 1.260946e-02	k: 1930	n:160000
KS ci ratio: 1.024764e-01	ci left: 8.597857e-03	ci right 9.532562e-03	k: 1449	n:160000
TCTN2   160000 perm   44 sec   (3627 perm/sec)   p_kst 9.056250e-03   p_cons 1.206250e-02   p_joint 3.718750e-03

Joint ci ratio: 1.545381e-01	ci left: 3.479136e-03	ci right 4.067398e-03	k: 640	n:170000
Cons ci ratio: 8.567455e-02	ci left: 1.164324e-02	ci right 1.269114e-02	k: 2067	n:170000
KS ci ratio: 9.924217e-02	ci left: 8.642573e-03	ci right 9.550758e-03	k: 1545	n:170000
TCTN2   170000 perm   48 sec   (3570 perm/sec)   p_kst 9.088235e-03   p_cons 1.215882e-02   p_joint 3.764706e-03

Joint ci ratio: 1.498195e-01	ci left: 3.504960e-03	ci right 4.077871e-03	k: 681	n:180000
Cons ci ratio: 8.313870e-02	ci left: 1.169251e-02	ci right 1.271218e-02	k: 2195	n:180000
KS ci ratio: 9.668302e-02	ci left: 8.612237e-03	ci right 9.492573e-03	k: 1628	n:180000
TCTN2   180000 perm   51 sec   (3519 perm/sec)   p_kst 9.044444e-03   p_cons 1.219444e-02   p_joint 3.783333e-03

Joint ci ratio: 1.456095e-01	ci left: 3.523237e-03	ci right 4.081545e-03	k: 721	n:190000
Cons ci ratio: 8.097434e-02	ci left: 1.169058e-02	ci right 1.268228e-02	k: 2314	n:190000
KS ci ratio: 9.439563e-02	ci left: 8.569944e-03	ci right 9.424085e-03	k: 1708	n:190000
TCTN2   190000 perm   55 sec   (3469 perm/sec)   p_kst 8.989474e-03   p_cons 1.217895e-02   p_joint 3.794737e-03

Joint ci ratio: 1.413635e-01	ci left: 3.559182e-03	ci right 4.105354e-03	k: 765	n:200000
Cons ci ratio: 7.900354e-02	ci left: 1.167934e-02	ci right 1.264487e-02	k: 2431	n:200000
KS ci ratio: 9.195257e-02	ci left: 8.590733e-03	ci right 9.423592e-03	k: 1800	n:200000
TCTN2   200000 perm   58 sec   (3419 perm/sec)   p_kst 9.000000e-03   p_cons 1.215500e-02   p_joint 3.825000e-03

Joint ci ratio: 1.385023e-01	ci left: 3.536741e-03	ci right 4.067577e-03	k: 797	n:210000
Cons ci ratio: 7.733906e-02	ci left: 1.161806e-02	ci right 1.255738e-02	k: 2537	n:210000
KS ci ratio: 9.000225e-02	ci left: 8.549273e-03	ci right 9.359607e-03	k: 1879	n:210000
TCTN2   210000 perm   62 sec   (3371 perm/sec)   p_kst 8.947619e-03   p_cons 1.208095e-02   p_joint 3.795238e-03

Joint ci ratio: 5.003646e-02	ci left: 2.646138e-02	ci right 2.782385e-02	k: 5970	n:220000
Cons ci ratio: 6.534293e-02	ci left: 1.556924e-02	ci right 1.662539e-02	k: 3540	n:220000
KS ci ratio: 8.808028e-02	ci left: 8.529537e-03	ci right 9.319847e-03	k: 1962	n:220000
TCTN2   220000 perm   66 sec   (3325 perm/sec)   p_kst 8.918182e-03   p_cons 1.609091e-02   p_joint 2.713636e-02

Outputting figure to mutsig2_images.part000000000173/TCTN2.2_2166_220000_0.0089182_0.016091_0.027136.png
                gene_name: TCTN2
               theta_stop: 0.088 
                    nperm: 220000 
                     p_ks: 0.0089 
        ci_ks_bounds_left: 0.0085 
       ci_ks_bounds_right: 0.0093 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 73 percent done.
TCTN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.146083e-02	ci left: 2.229660e-01	ci right 2.395908e-01	k: 2312	n:10000
Cons ci ratio: 2.634093e-02	ci left: 6.797224e-01	ci right 6.979674e-01	k: 6889	n:10000
KS ci ratio: 1.898176e-01	ci left: 3.700694e-02	ci right 4.486335e-02	k: 408	n:10000
TCTN3   10000 perm   2 sec   (6355 perm/sec)   p_kst 4.080000e-02   p_cons 6.889000e-01   p_joint 2.312000e-01

Joint ci ratio: 6.312323e-02	ci left: 1.565232e-01	ci right 1.667754e-01	k: 3232	n:20000
Cons ci ratio: 1.879389e-02	ci left: 6.785610e-01	ci right 6.914852e-01	k: 13701	n:20000
KS ci ratio: 1.344817e-01	ci left: 3.800349e-02	ci right 4.353104e-02	k: 814	n:20000
TCTN3   20000 perm   4 sec   (5498 perm/sec)   p_kst 4.070000e-02   p_cons 6.850500e-01   p_joint 1.616000e-01

Joint ci ratio: 4.824508e-02	ci left: 1.759972e-01	ci right 1.847314e-01	k: 5410	n:30000
Cons ci ratio: 1.537080e-02	ci left: 6.790396e-01	ci right 6.895913e-01	k: 20530	n:30000
KS ci ratio: 1.101102e-01	ci left: 3.829725e-02	ci right 4.279228e-02	k: 1215	n:30000
TCTN3   30000 perm   6 sec   (5076 perm/sec)   p_kst 4.050000e-02   p_cons 6.843333e-01   p_joint 1.803333e-01

Joint ci ratio: 3.277861e-02	ci left: 2.590385e-01	ci right 2.676959e-01	k: 10534	n:40000
Cons ci ratio: 1.323795e-02	ci left: 6.821537e-01	ci right 6.912692e-01	k: 27469	n:40000
KS ci ratio: 9.470102e-02	ci left: 3.912654e-02	ci right 4.304044e-02	k: 1642	n:40000
TCTN3   40000 perm   8 sec   (4907 perm/sec)   p_kst 4.105000e-02   p_cons 6.867250e-01   p_joint 2.633500e-01

Outputting figure to mutsig2_images.part000000000173/TCTN3.2_1880_40000_0.04105_0.68673_0.26335.png
                gene_name: TCTN3
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 75 percent done.
TDG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.326853e-02	ci left: 3.418387e-01	ci right 3.606481e-01	k: 3512	n:10000
KS ci ratio: 3.217011e-02	ci left: 5.878110e-01	ci right 6.071321e-01	k: 5975	n:10000
TDG   10000 perm   1 sec   (6751 perm/sec)   p_kst 5.975000e-01   p_cons 3.512000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TDG.2_1273_10000_0.5975_0.3512_1.png
                gene_name: TDG
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
TDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.404691e-02	ci left: 2.107297e-01	ci right 2.270344e-01	k: 2188	n:10000
Cons ci ratio: 7.616684e-02	ci left: 2.013622e-01	ci right 2.174074e-01	k: 2093	n:10000
KS ci ratio: 6.565379e-02	ci left: 2.540943e-01	ci right 2.714441e-01	k: 2627	n:10000
TDP1   10000 perm   2 sec   (6094 perm/sec)   p_kst 2.627000e-01   p_cons 2.093000e-01   p_joint 2.188000e-01

Outputting figure to mutsig2_images.part000000000173/TDP1.2_1887_10000_0.2627_0.2093_0.2188.png
                gene_name: TDP1
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 78 percent done.
TDRD9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.708085e-02	ci left: 6.676335e-01	ci right 6.860634e-01	k: 6769	n:10000
Cons ci ratio: 1.690602e-02	ci left: 8.359236e-01	ci right 8.502760e-01	k: 8432	n:10000
KS ci ratio: 7.859457e-02	ci left: 1.913119e-01	ci right 2.070637e-01	k: 1991	n:10000
TDRD9   10000 perm   2 sec   (4758 perm/sec)   p_kst 1.991000e-01   p_cons 8.432000e-01   p_joint 6.769000e-01

Outputting figure to mutsig2_images.part000000000173/TDRD9.2_4293_10000_0.1991_0.8432_0.6769.png
                gene_name: TDRD9
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 79 percent done.
TDRKH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.679726e-02	ci left: 8.376546e-01	ci right 8.519439e-01	k: 8449	n:10000
Cons ci ratio: 1.110452e-01	ci left: 1.046144e-01	ci right 1.170133e-01	k: 1107	n:10000
KS ci ratio: 4.821140e-02	ci left: 3.882876e-01	ci right 4.075719e-01	k: 3979	n:10000
TDRKH   10000 perm   2 sec   (6412 perm/sec)   p_kst 3.979000e-01   p_cons 1.107000e-01   p_joint 8.449000e-01

Joint ci ratio: 1.072993e-02	ci left: 8.649558e-01	ci right 8.743364e-01	k: 17394	n:20000
Cons ci ratio: 7.742634e-02	ci left: 1.091844e-01	ci right 1.180283e-01	k: 2271	n:20000
KS ci ratio: 3.409389e-02	ci left: 3.911067e-01	ci right 4.047230e-01	k: 7958	n:20000
TDRKH   20000 perm   4 sec   (5625 perm/sec)   p_kst 3.979000e-01   p_cons 1.135500e-01   p_joint 8.697000e-01

Outputting figure to mutsig2_images.part000000000173/TDRKH.2_1734_20000_0.3979_0.11355_0.8697.png
                gene_name: TDRKH
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 81 percent done.
TEAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.740814e-02	ci left: 8.278829e-01	ci right 8.425213e-01	k: 8353	n:10000
Cons ci ratio: 1.057738e-02	ci left: 9.270955e-01	ci right 9.370510e-01	k: 9322	n:10000
KS ci ratio: 6.793149e-02	ci left: 2.412404e-01	ci right 2.583056e-01	k: 2497	n:10000
TEAD1   10000 perm   2 sec   (6187 perm/sec)   p_kst 2.497000e-01   p_cons 9.322000e-01   p_joint 8.353000e-01

Outputting figure to mutsig2_images.part000000000173/TEAD1.2_1325_10000_0.2497_0.9322_0.8353.png
                gene_name: TEAD1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 83 percent done.
TEAD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.517326e-02	ci left: 6.989787e-01	ci right 7.169000e-01	k: 7080	n:10000
Cons ci ratio: 7.693422e-02	ci left: 1.981098e-01	ci right 2.140618e-01	k: 2060	n:10000
KS ci ratio: 2.641468e-02	ci left: 6.785132e-01	ci right 6.967774e-01	k: 6877	n:10000
TEAD3   10000 perm   2 sec   (6346 perm/sec)   p_kst 6.877000e-01   p_cons 2.060000e-01   p_joint 7.080000e-01

Outputting figure to mutsig2_images.part000000000173/TEAD3.2_1356_10000_0.6877_0.206_0.708.png
                gene_name: TEAD3
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 84 percent done.
TEF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.405090e-02	ci left: 7.176482e-01	ci right 7.352197e-01	k: 7265	n:10000
KS ci ratio: 2.021733e-02	ci left: 7.817816e-01	ci right 7.978492e-01	k: 7899	n:10000
TEF   10000 perm   1 sec   (6704 perm/sec)   p_kst 7.899000e-01   p_cons 7.265000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TEF.2_999_10000_0.7899_0.7265_1.png
                gene_name: TEF
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
TERF2IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.241887e-01	ci left: 8.494677e-02	ci right 9.629302e-02	k: 905	n:10000
Cons ci ratio: 3.715456e-02	ci left: 5.168576e-01	ci right 5.365269e-01	k: 5267	n:10000
KS ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
TERF2IP   10000 perm   2 sec   (6409 perm/sec)   p_kst 4.150000e-02   p_cons 5.267000e-01   p_joint 9.050000e-02

Joint ci ratio: 4.498351e-02	ci left: 2.689687e-01	ci right 2.813967e-01	k: 5503	n:20000
Cons ci ratio: 2.720574e-02	ci left: 5.023458e-01	ci right 5.162515e-01	k: 10186	n:20000
KS ci ratio: 1.320512e-01	ci left: 3.940703e-02	ci right 4.502705e-02	k: 843	n:20000
TERF2IP   20000 perm   4 sec   (5467 perm/sec)   p_kst 4.215000e-02   p_cons 5.093000e-01   p_joint 2.751500e-01

Joint ci ratio: 4.213608e-02	ci left: 2.191601e-01	ci right 2.286268e-01	k: 6716	n:30000
Cons ci ratio: 2.224061e-02	ci left: 5.030256e-01	ci right 5.143727e-01	k: 15261	n:30000
KS ci ratio: 1.068545e-01	ci left: 4.063475e-02	ci right 4.525430e-02	k: 1287	n:30000
TERF2IP   30000 perm   6 sec   (5190 perm/sec)   p_kst 4.290000e-02   p_cons 5.087000e-01   p_joint 2.238667e-01

Joint ci ratio: 3.401154e-02	ci left: 2.450415e-01	ci right 2.535449e-01	k: 9971	n:40000
Cons ci ratio: 1.926695e-02	ci left: 5.036378e-01	ci right 5.134609e-01	k: 20342	n:40000
KS ci ratio: 9.246404e-02	ci left: 4.100833e-02	ci right 4.500836e-02	k: 1719	n:40000
TERF2IP   40000 perm   8 sec   (5003 perm/sec)   p_kst 4.297500e-02   p_cons 5.085500e-01   p_joint 2.492750e-01

Outputting figure to mutsig2_images.part000000000173/TERF2IP.2_1212_40000_0.042975_0.50855_0.24927.png
                gene_name: TERF2IP
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.25 

Current progress: 87 percent done.
TERT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.837199e-02	ci left: 5.007505e-01	ci right 5.204433e-01	k: 5106	n:10000
Cons ci ratio: 1.698263e-02	ci left: 8.347018e-01	ci right 8.490984e-01	k: 8420	n:10000
KS ci ratio: 1.604833e-01	ci left: 5.176584e-02	ci right 6.089478e-02	k: 562	n:10000
TERT   10000 perm   2 sec   (4779 perm/sec)   p_kst 5.620000e-02   p_cons 8.420000e-01   p_joint 5.106000e-01

Joint ci ratio: 3.620443e-02	ci left: 3.628050e-01	ci right 3.762329e-01	k: 7390	n:20000
Cons ci ratio: 1.201015e-02	ci left: 8.368198e-01	ci right 8.469806e-01	k: 16839	n:20000
KS ci ratio: 1.131622e-01	ci left: 5.338848e-02	ci right 5.984119e-02	k: 1131	n:20000
TERT   20000 perm   5 sec   (4378 perm/sec)   p_kst 5.655000e-02   p_cons 8.419500e-01   p_joint 3.695000e-01

Joint ci ratio: 2.610537e-02	ci left: 4.234564e-01	ci right 4.346907e-01	k: 12872	n:30000
Cons ci ratio: 9.769821e-03	ci left: 8.387661e-01	ci right 8.470341e-01	k: 25288	n:30000
KS ci ratio: 9.286185e-02	ci left: 5.345727e-02	ci right 5.869579e-02	k: 1681	n:30000
TERT   30000 perm   7 sec   (4254 perm/sec)   p_kst 5.603333e-02   p_cons 8.429333e-01   p_joint 4.290667e-01

Outputting figure to mutsig2_images.part000000000173/TERT.2_3463_30000_0.056033_0.84293_0.42907.png
                gene_name: TERT
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.43 

Current progress: 89 percent done.
TES
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.333011e-02	ci left: 2.681458e-01	ci right 2.857843e-01	k: 2769	n:10000
KS ci ratio: 1.915886e-02	ci left: 7.993290e-01	ci right 8.148917e-01	k: 8072	n:10000
TES   10000 perm   2 sec   (6380 perm/sec)   p_kst 8.072000e-01   p_cons 2.769000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000173/TES.2_1294_10000_0.8072_0.2769_1.png
                gene_name: TES
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
TESK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.925331e-01	ci left: 3.595770e-02	ci right 4.371330e-02	k: 397	n:10000
Cons ci ratio: 2.413489e-01	ci left: 2.259324e-02	ci right 2.888717e-02	k: 256	n:10000
KS ci ratio: 7.591471e-02	ci left: 2.024465e-01	ci right 2.185225e-01	k: 2104	n:10000
TESK1   10000 perm   2 sec   (5880 perm/sec)   p_kst 2.104000e-01   p_cons 2.560000e-02   p_joint 3.970000e-02

Joint ci ratio: 3.242028e-02	ci left: 4.153915e-01	ci right 4.291311e-01	k: 8445	n:20000
Cons ci ratio: 1.441613e-01	ci left: 3.307475e-02	ci right 3.826138e-02	k: 712	n:20000
KS ci ratio: 5.269105e-02	ci left: 2.110066e-01	ci right 2.224758e-01	k: 4334	n:20000
TESK1   20000 perm   4 sec   (5059 perm/sec)   p_kst 2.167000e-01   p_cons 3.560000e-02   p_joint 4.222500e-01

Joint ci ratio: 2.799202e-02	ci left: 3.897280e-01	ci right 4.008257e-01	k: 11858	n:30000
Cons ci ratio: 1.160583e-01	ci left: 3.450344e-02	ci right 3.878689e-02	k: 1098	n:30000
KS ci ratio: 4.323665e-02	ci left: 2.103954e-01	ci right 2.197265e-01	k: 6451	n:30000
TESK1   30000 perm   6 sec   (4781 perm/sec)   p_kst 2.150333e-01   p_cons 3.660000e-02   p_joint 3.952667e-01

Joint ci ratio: 2.616744e-02	ci left: 3.546707e-01	ci right 3.640997e-01	k: 14375	n:40000
Cons ci ratio: 1.021990e-01	ci left: 3.365916e-02	ci right 3.730868e-02	k: 1418	n:40000
KS ci ratio: 3.747648e-02	ci left: 2.107340e-01	ci right 2.188074e-01	k: 8590	n:40000
TESK1   40000 perm   9 sec   (4613 perm/sec)   p_kst 2.147500e-01   p_cons 3.545000e-02   p_joint 3.593750e-01

Joint ci ratio: 2.563651e-02	ci left: 3.145166e-01	ci right 3.227045e-01	k: 15930	n:50000
Cons ci ratio: 9.108417e-02	ci left: 3.409069e-02	ci right 3.736350e-02	k: 1785	n:50000
KS ci ratio: 3.345210e-02	ci left: 2.118430e-01	ci right 2.190701e-01	k: 10772	n:50000
TESK1   50000 perm   11 sec   (4479 perm/sec)   p_kst 2.154400e-01   p_cons 3.570000e-02   p_joint 3.186000e-01

Outputting figure to mutsig2_images.part000000000173/TESK1.2_1921_50000_0.21544_0.0357_0.3186.png
                gene_name: TESK1
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 92 percent done.
TEX12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.974146e-02	ci left: 7.896903e-01	ci right 8.055359e-01	k: 7977	n:10000
Cons ci ratio: 2.984537e-02	ci left: 6.234656e-01	ci right 6.424569e-01	k: 6330	n:10000
KS ci ratio: 8.352371e-02	ci left: 1.729074e-01	ci right 1.880792e-01	k: 1804	n:10000
TEX12   10000 perm   2 sec   (6585 perm/sec)   p_kst 1.804000e-01   p_cons 6.330000e-01   p_joint 7.977000e-01

Outputting figure to mutsig2_images.part000000000173/TEX12.2_388_10000_0.1804_0.633_0.7977.png
                gene_name: TEX12
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 94 percent done.
TEX13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.105409e-01	ci left: 1.054923e-01	ci right 1.179349e-01	k: 1116	n:10000
Cons ci ratio: 1.331091e-01	ci left: 7.446484e-02	ci right 8.518145e-02	k: 797	n:10000
KS ci ratio: 6.329851e-02	ci left: 2.683438e-01	ci right 2.859862e-01	k: 2771	n:10000
TEX13B   10000 perm   1 sec   (7094 perm/sec)   p_kst 2.771000e-01   p_cons 7.970000e-02   p_joint 1.116000e-01

Joint ci ratio: 8.459497e-02	ci left: 9.283400e-02	ci right 1.010836e-01	k: 1938	n:20000
Cons ci ratio: 9.406027e-02	ci left: 7.612963e-02	ci right 8.369304e-02	k: 1597	n:20000
KS ci ratio: 4.490471e-02	ci left: 2.696638e-01	ci right 2.821015e-01	k: 5517	n:20000
TEX13B   20000 perm   3 sec   (5934 perm/sec)   p_kst 2.758500e-01   p_cons 7.985000e-02   p_joint 9.690000e-02

Outputting figure to mutsig2_images.part000000000173/TEX13B.2_947_20000_0.27585_0.07985_0.0969.png
                gene_name: TEX13B
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.080 
      ci_cons_bounds_left: 0.076 
     ci_cons_bounds_right: 0.084 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.10 

Current progress: 95 percent done.
TEX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.625609e-02	ci left: 4.082083e-01	ci right 4.276396e-01	k: 4179	n:10000
Cons ci ratio: 4.747495e-02	ci left: 3.956563e-01	ci right 4.149989e-01	k: 4053	n:10000
KS ci ratio: 6.440648e-02	ci left: 2.615144e-01	ci right 2.790196e-01	k: 2702	n:10000
TEX2   10000 perm   2 sec   (4993 perm/sec)   p_kst 2.702000e-01   p_cons 4.053000e-01   p_joint 4.179000e-01

Outputting figure to mutsig2_images.part000000000173/TEX2.2_3449_10000_0.2702_0.4053_0.4179.png
                gene_name: TEX2
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 97 percent done.
TFAP2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.767632e-03	ci left: 9.758897e-01	ci right 9.816267e-01	k: 9789	n:10000
Cons ci ratio: 8.432283e-02	ci left: 1.701542e-01	ci right 1.852341e-01	k: 1776	n:10000
KS ci ratio: 1.039235e-02	ci left: 9.293697e-01	ci right 9.391755e-01	k: 9344	n:10000
TFAP2A   10000 perm   1 sec   (6730 perm/sec)   p_kst 9.344000e-01   p_cons 1.776000e-01   p_joint 9.789000e-01

Outputting figure to mutsig2_images.part000000000173/TFAP2A.2_1410_10000_0.9344_0.1776_0.9789.png
                gene_name: TFAP2A
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 98 percent done.
TFAP2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.229471e-02	ci left: 2.189190e-01	ci right 2.354402e-01	k: 2271	n:10000
Cons ci ratio: 3.110410e-02	ci left: 6.039745e-01	ci right 6.231593e-01	k: 6136	n:10000
KS ci ratio: 1.474582e-01	ci left: 6.111415e-02	ci right 7.094050e-02	k: 659	n:10000
TFAP2C   10000 perm   2 sec   (6288 perm/sec)   p_kst 6.590000e-02   p_cons 6.136000e-01   p_joint 2.271000e-01

Joint ci ratio: 3.431696e-03	ci left: 9.831653e-01	ci right 9.865916e-01	k: 19699	n:20000
Cons ci ratio: 2.132795e-02	ci left: 6.213585e-01	ci right 6.348042e-01	k: 12562	n:20000
KS ci ratio: 1.059567e-01	ci left: 6.064653e-02	ci right 6.748089e-02	k: 1280	n:20000
TFAP2C   20000 perm   4 sec   (5565 perm/sec)   p_kst 6.400000e-02   p_cons 6.281000e-01   p_joint 9.849500e-01

Joint ci ratio: 3.359811e-03	ci left: 9.767604e-01	ci right 9.800794e-01	k: 29354	n:30000
Cons ci ratio: 1.742939e-02	ci left: 6.222009e-01	ci right 6.331744e-01	k: 18831	n:30000
KS ci ratio: 8.635796e-02	ci left: 6.148468e-02	ci right 6.706674e-02	k: 1927	n:30000
TFAP2C   30000 perm   6 sec   (5305 perm/sec)   p_kst 6.423333e-02   p_cons 6.277000e-01   p_joint 9.784667e-01

Outputting figure to mutsig2_images.part000000000173/TFAP2C.2_1381_30000_0.064233_0.6277_0.97847.png
                gene_name: TFAP2C
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000173
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 173 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1423>
Subject: Job 9894177: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1423>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000174> was used as the working directory.
Started at Sat Oct  6 00:32:29 2012
Results reported at Sat Oct  6 00:53:41 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000174.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000174.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 174  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000174.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1430.03 sec.
    Max Memory :      3586 MB
    Max Swap   :      5922 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
174
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 174
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 174: processing genes 15597 - 15686
Calculating significance of each gene.
Using projection method.
15597	TFCP2	1.840774e-01
15598	TFCP2L1	6.283248e-01
15599	TFDP1	2.791781e-01
15600	TFDP2	8.178840e-01
15601	TFDP3	6.140709e-01
15602	TFE3	2.213248e-01
15603	TFEB	3.496755e-01
15604	TFEC	8.794961e-02
15605	TFF1	1
15606	TFF2	4.100945e-01
15607	TFF3	1
15608	TFG	5.980811e-02
15609	TFIP11	5.212985e-01
15610	TFPI	1.565568e-01
15611	TFPI2	3.336165e-02
15612	TFPT	1
15613	TFR2	5.446659e-01
15614	TFRC	6.849094e-01
15615	TG	2.248528e-01
15616	TGDS	8.405554e-01
15617	TGFA	1
15618	TGFB1	6.853470e-01
15619	TGFB1I1	1
15620	TGFB2	2.294621e-02
15621	TGFB3	1
15622	TGFBI	8.592218e-01
15623	TGFBR1	8.102319e-03
15624	TGFBR2	7.326766e-03
15625	TGFBR3	4.137002e-01
15626	TGFBRAP1	8.601189e-01
15627	TGIF1	1.590065e-02
15628	TGIF2	1.722788e-01
15629	TGIF2LX	5.161911e-01
15630	TGIF2LY	1
15631	TGM1	6.000925e-01
15632	TGM2	5.136492e-01
15633	TGM3	4.040813e-01
15634	TGM4	2.669138e-02
15635	TGM5	2.716342e-02
15636	TGM6	9.154999e-01
15637	TGM7	2.221638e-01
15638	TGOLN2	4.913496e-01
15639	TGS1	8.366022e-01
15640	TH	1
15641	TH1L	7.615455e-01
15642	THADA	9.905074e-01
15643	THAP1	1
15644	THAP10	1
15645	THAP11	8.910914e-01
15646	THAP2	2.395461e-01
15647	THAP3	1.389887e-01
15648	THAP4	4.167563e-01
15649	THAP5	8.380969e-02
15650	THAP6	1
15651	THAP7	1
15652	THAP8	5.214187e-01
15653	THAP9	2.479541e-02
15654	THBD	7.664413e-01
15655	THBS1	1.278074e-01
15656	THBS2	1.338157e-02
15657	THBS3	7.342388e-01
15658	THBS4	9.444491e-01
15659	THEG	1.466122e-01
15660	THEM4	1.904182e-01
15661	THEM5	4.663370e-01
15662	THEMIS	1.276667e-01
15663	THG1L	1
15664	THNSL1	9.814885e-02
15665	THNSL2	1
15666	THOC1	2.498820e-01
15667	THOC2	5.793900e-01
15668	THOC3	5.450489e-01
15669	THOC4	1
15670	THOC5	3.761696e-01
15671	THOC6	5.494313e-01
15672	THOC7	4.872583e-01
15673	THOP1	1
15674	THPO	6.347102e-01
15675	THRA	8.575043e-01
15676	THRAP3	7.750561e-01
15677	THRB	1.240944e-01
15678	THRSP	1
15679	THSD1	8.216661e-01
15680	THSD4	9.580273e-01
15681	THSD7A	7.266485e-01
15682	THSD7B	1.213028e-01
15683	THTPA	5.536829e-01
15684	THUMPD1	3.896465e-01
15685	THUMPD2	5.014856e-01
15686	THUMPD3	4.993249e-01
Done

Running MutSig 2:
Scatter job 174: processing genes 15597 - 15686
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.515890e-03	ci left: 9.698435e-01	ci right 9.762769e-01	k: 9732	n:10000
Cons ci ratio: 4.520736e-02	ci left: 4.193710e-01	ci right 4.388703e-01	k: 4291	n:10000
KS ci ratio: 3.171733e-02	ci left: 5.946365e-01	ci right 6.139027e-01	k: 6043	n:10000
TG   10000 perm   4 sec   (2269 perm/sec)   p_kst 6.043000e-01   p_cons 4.291000e-01   p_joint 9.732000e-01

Outputting figure to mutsig2_images.part000000000174/TG.22_8499_10000_0.6043_0.4291_0.9732.png
                gene_name: TG
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 2 percent done.
THBS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.111066e-02	ci left: 6.038741e-01	ci right 6.230598e-01	k: 6135	n:10000
Cons ci ratio: 6.022247e-02	ci left: 2.885499e-01	ci right 3.065682e-01	k: 2975	n:10000
KS ci ratio: 2.190155e-02	ci left: 7.536289e-01	ci right 7.704182e-01	k: 7621	n:10000
THBS2   10000 perm   2 sec   (4172 perm/sec)   p_kst 7.621000e-01   p_cons 2.975000e-01   p_joint 6.135000e-01

Outputting figure to mutsig2_images.part000000000174/THBS2.15_3603_10000_0.7621_0.2975_0.6135.png
                gene_name: THBS2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 3 percent done.
THAP9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.172899e-02	ci left: 4.588797e-01	ci right 4.785385e-01	k: 4687	n:10000
Cons ci ratio: 1.064407e-02	ci left: 9.262689e-01	ci right 9.362781e-01	k: 9314	n:10000
KS ci ratio: 5.586816e-02	ci left: 3.205861e-01	ci right 3.391131e-01	k: 3298	n:10000
THAP9   10000 perm   2 sec   (4200 perm/sec)   p_kst 3.298000e-01   p_cons 9.314000e-01   p_joint 4.687000e-01

Outputting figure to mutsig2_images.part000000000174/THAP9.11_2732_10000_0.3298_0.9314_0.4687.png
                gene_name: THAP9
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 5 percent done.
THSD7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.236599e-01	ci left: 2.646035e-02	ci right 3.321723e-02	k: 297	n:10000
Cons ci ratio: 1.123944e-02	ci left: 9.187348e-01	ci right 9.292167e-01	k: 9241	n:10000
KS ci ratio: 4.392673e-01	ci left: 6.170319e-03	ci right 9.725324e-03	k: 78	n:10000
THSD7B   10000 perm   3 sec   (3828 perm/sec)   p_kst 7.800000e-03   p_cons 9.241000e-01   p_joint 2.970000e-02

Joint ci ratio: 2.104574e-01	ci left: 1.525391e-02	ci right 1.888845e-02	k: 340	n:20000
Cons ci ratio: 7.577348e-03	ci left: 9.268876e-01	ci right 9.339866e-01	k: 18610	n:20000
KS ci ratio: 3.426791e-01	ci left: 5.387780e-03	ci right 7.659273e-03	k: 129	n:20000
THSD7B   20000 perm   6 sec   (3456 perm/sec)   p_kst 6.450000e-03   p_cons 9.305000e-01   p_joint 1.700000e-02

Joint ci ratio: 1.265318e-01	ci left: 2.903531e-02	ci right 3.298954e-02	k: 929	n:30000
Cons ci ratio: 6.181565e-03	ci left: 9.276657e-01	ci right 9.334506e-01	k: 27918	n:30000
KS ci ratio: 2.755631e-01	ci left: 5.777180e-03	ci right 7.653601e-03	k: 200	n:30000
THSD7B   30000 perm   9 sec   (3346 perm/sec)   p_kst 6.666667e-03   p_cons 9.306000e-01   p_joint 3.096667e-02

Joint ci ratio: 1.294814e-01	ci left: 2.094786e-02	ci right 2.387204e-02	k: 895	n:40000
Cons ci ratio: 5.391386e-03	ci left: 9.271254e-01	ci right 9.321620e-01	k: 37187	n:40000
KS ci ratio: 2.305558e-01	ci left: 6.347756e-03	ci right 8.024985e-03	k: 286	n:40000
THSD7B   40000 perm   12 sec   (3275 perm/sec)   p_kst 7.150000e-03   p_cons 9.296750e-01   p_joint 2.237500e-02

Joint ci ratio: 1.219081e-01	ci left: 1.902359e-02	ci right 2.151254e-02	k: 1012	n:50000
Cons ci ratio: 4.819683e-03	ci left: 9.274647e-01	ci right 9.319653e-01	k: 46487	n:50000
KS ci ratio: 2.055676e-01	ci left: 6.477653e-03	ci right 7.980412e-03	k: 360	n:50000
THSD7B   50000 perm   16 sec   (3195 perm/sec)   p_kst 7.200000e-03   p_cons 9.297400e-01   p_joint 2.024000e-02

Joint ci ratio: 1.011216e-01	ci left: 2.319643e-02	ci right 2.568319e-02	k: 1465	n:60000
Cons ci ratio: 4.389228e-03	ci left: 9.279799e-01	ci right 9.320784e-01	k: 55803	n:60000
KS ci ratio: 1.879194e-01	ci left: 6.523199e-03	ci right 7.891785e-03	k: 431	n:60000
THSD7B   60000 perm   19 sec   (3116 perm/sec)   p_kst 7.183333e-03   p_cons 9.300500e-01   p_joint 2.441667e-02

Joint ci ratio: 9.106925e-02	ci left: 2.461016e-02	ci right 2.697223e-02	k: 1804	n:70000
Cons ci ratio: 4.066039e-03	ci left: 9.280559e-01	ci right 9.318512e-01	k: 65098	n:70000
KS ci ratio: 1.717624e-01	ci left: 6.751096e-03	ci right 8.033104e-03	k: 516	n:70000
THSD7B   70000 perm   23 sec   (3076 perm/sec)   p_kst 7.371429e-03   p_cons 9.299714e-01   p_joint 2.577143e-02

Joint ci ratio: 9.134938e-02	ci left: 2.147121e-02	ci right 2.353862e-02	k: 1799	n:80000
Cons ci ratio: 3.801102e-03	ci left: 9.282606e-01	ci right 9.318081e-01	k: 74404	n:80000
KS ci ratio: 1.602403e-01	ci left: 6.829781e-03	ci right 8.031356e-03	k: 593	n:80000
THSD7B   80000 perm   26 sec   (3042 perm/sec)   p_kst 7.412500e-03   p_cons 9.300500e-01   p_joint 2.248750e-02

Joint ci ratio: 8.156370e-02	ci left: 2.400067e-02	ci right 2.605232e-02	k: 2251	n:90000
Cons ci ratio: 3.587817e-03	ci left: 9.282125e-01	ci right 9.315597e-01	k: 83691	n:90000
KS ci ratio: 1.512187e-01	ci left: 6.850443e-03	ci right 7.981655e-03	k: 666	n:90000
THSD7B   90000 perm   30 sec   (3005 perm/sec)   p_kst 7.400000e-03   p_cons 9.299000e-01   p_joint 2.501111e-02

Joint ci ratio: 7.612708e-02	ci left: 2.484579e-02	ci right 2.682184e-02	k: 2582	n:100000
Cons ci ratio: 3.401594e-03	ci left: 9.283809e-01	ci right 9.315541e-01	k: 92998	n:100000
KS ci ratio: 1.424085e-01	ci left: 6.984228e-03	ci right 8.064631e-03	k: 751	n:100000
THSD7B   100000 perm   34 sec   (2968 perm/sec)   p_kst 7.510000e-03   p_cons 9.299800e-01   p_joint 2.582000e-02

Joint ci ratio: 7.426916e-02	ci left: 2.378186e-02	ci right 2.562513e-02	k: 2716	n:110000
Cons ci ratio: 3.234395e-03	ci left: 9.288160e-01	ci right 9.318340e-01	k: 102337	n:110000
KS ci ratio: 1.357151e-01	ci left: 7.016185e-03	ci right 8.046399e-03	k: 827	n:110000
THSD7B   110000 perm   38 sec   (2933 perm/sec)   p_kst 7.518182e-03   p_cons 9.303364e-01   p_joint 2.469091e-02

Joint ci ratio: 7.376624e-02	ci left: 2.214287e-02	ci right 2.384696e-02	k: 2758	n:120000
Cons ci ratio: 3.090383e-03	ci left: 9.291475e-01	ci right 9.320316e-01	k: 111672	n:120000
KS ci ratio: 1.295243e-01	ci left: 7.084131e-03	ci right 8.073223e-03	k: 908	n:120000
THSD7B   120000 perm   41 sec   (2899 perm/sec)   p_kst 7.566667e-03   p_cons 9.306000e-01   p_joint 2.298333e-02

Joint ci ratio: 7.003643e-02	ci left: 2.270601e-02	ci right 2.436149e-02	k: 3058	n:130000
Cons ci ratio: 2.969311e-03	ci left: 9.291973e-01	ci right 9.319681e-01	k: 120977	n:130000
KS ci ratio: 1.238581e-01	ci left: 7.172348e-03	ci right 8.126734e-03	k: 993	n:130000
THSD7B   130000 perm   45 sec   (2862 perm/sec)   p_kst 7.638462e-03   p_cons 9.305923e-01   p_joint 2.352308e-02

Joint ci ratio: 6.446008e-02	ci left: 2.490549e-02	ci right 2.657137e-02	k: 3602	n:140000
Cons ci ratio: 2.855422e-03	ci left: 9.295157e-01	ci right 9.321807e-01	k: 130320	n:140000
KS ci ratio: 1.186544e-01	ci left: 7.276497e-03	ci right 8.201209e-03	k: 1082	n:140000
THSD7B   140000 perm   50 sec   (2828 perm/sec)   p_kst 7.728571e-03   p_cons 9.308571e-01   p_joint 2.572857e-02

Joint ci ratio: 6.425238e-02	ci left: 2.343477e-02	ci right 2.499702e-02	k: 3631	n:150000
Cons ci ratio: 2.761673e-03	ci left: 9.294166e-01	ci right 9.319934e-01	k: 139607	n:150000
KS ci ratio: 1.150997e-01	ci left: 7.231468e-03	ci right 8.121054e-03	k: 1150	n:150000
THSD7B   150000 perm   54 sec   (2794 perm/sec)   p_kst 7.666667e-03   p_cons 9.307133e-01   p_joint 2.420667e-02

Joint ci ratio: 6.280554e-02	ci left: 2.302172e-02	ci right 2.452061e-02	k: 3802	n:160000
Cons ci ratio: 2.669971e-03	ci left: 9.296526e-01	ci right 9.321442e-01	k: 148945	n:160000
KS ci ratio: 1.111140e-01	ci left: 7.289663e-03	ci right 8.153319e-03	k: 1234	n:160000
THSD7B   160000 perm   58 sec   (2760 perm/sec)   p_kst 7.712500e-03   p_cons 9.309063e-01   p_joint 2.376250e-02

Joint ci ratio: 6.652165e-02	ci left: 1.935132e-02	ci right 2.068865e-02	k: 3402	n:170000
Cons ci ratio: 2.824433e-03	ci left: 9.175981e-01	ci right 9.201993e-01	k: 156214	n:170000
KS ci ratio: 1.069450e-01	ci left: 7.421638e-03	ci right 8.265864e-03	k: 1332	n:170000
THSD7B   170000 perm   62 sec   (2724 perm/sec)   p_kst 7.835294e-03   p_cons 9.189059e-01   p_joint 2.001176e-02

Joint ci ratio: 6.746421e-02	ci left: 1.778960e-02	ci right 1.903709e-02	k: 3313	n:180000
Cons ci ratio: 2.742709e-03	ci left: 9.177524e-01	ci right 9.202785e-01	k: 165424	n:180000
KS ci ratio: 1.042454e-01	ci left: 7.387937e-03	ci right 8.205813e-03	k: 1402	n:180000
THSD7B   180000 perm   67 sec   (2691 perm/sec)   p_kst 7.788889e-03   p_cons 9.190222e-01   p_joint 1.840556e-02

Joint ci ratio: 6.851453e-02	ci left: 1.635621e-02	ci right 1.752175e-02	k: 3217	n:190000
Cons ci ratio: 2.670330e-03	ci left: 9.177430e-01	ci right 9.202021e-01	k: 174606	n:190000
KS ci ratio: 1.009491e-01	ci left: 7.476030e-03	ci right 8.275937e-03	k: 1495	n:190000
THSD7B   190000 perm   71 sec   (2659 perm/sec)   p_kst 7.868421e-03   p_cons 9.189789e-01   p_joint 1.693158e-02

Joint ci ratio: 6.723921e-02	ci left: 1.614782e-02	ci right 1.727625e-02	k: 3341	n:200000
Cons ci ratio: 2.600946e-03	ci left: 9.178762e-01	ci right 9.202716e-01	k: 183816	n:200000
KS ci ratio: 9.838478e-02	ci left: 7.487384e-03	ci right 8.266981e-03	k: 1574	n:200000
THSD7B   200000 perm   76 sec   (2628 perm/sec)   p_kst 7.870000e-03   p_cons 9.190800e-01   p_joint 1.670500e-02

Outputting figure to mutsig2_images.part000000000174/THSD7B.11_4841_200000_0.00787_0.91908_0.016705.png
                gene_name: THSD7B
               theta_stop: 0.098 
                    nperm: 200000 
                     p_ks: 0.0079 
        ci_ks_bounds_left: 0.0075 
       ci_ks_bounds_right: 0.0083 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 7 percent done.
THBS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.554502e-02	ci left: 6.928268e-01	ci right 7.108555e-01	k: 7019	n:10000
Cons ci ratio: 5.868840e-02	ci left: 2.993551e-01	ci right 3.175566e-01	k: 3084	n:10000
KS ci ratio: 1.525594e-02	ci left: 8.617190e-01	ci right 8.750656e-01	k: 8685	n:10000
THBS1   10000 perm   2 sec   (4567 perm/sec)   p_kst 8.685000e-01   p_cons 3.084000e-01   p_joint 7.019000e-01

Outputting figure to mutsig2_images.part000000000174/THBS1.10_3597_10000_0.8685_0.3084_0.7019.png
                gene_name: THBS1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 8 percent done.
THOC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.458556e-02	ci left: 4.261509e-01	ci right 4.456865e-01	k: 4359	n:10000
Cons ci ratio: 2.212491e-02	ci left: 7.498858e-01	ci right 7.667635e-01	k: 7584	n:10000
KS ci ratio: 5.889535e-02	ci left: 2.978678e-01	ci right 3.160448e-01	k: 3069	n:10000
THOC2   10000 perm   3 sec   (3912 perm/sec)   p_kst 3.069000e-01   p_cons 7.584000e-01   p_joint 4.359000e-01

Outputting figure to mutsig2_images.part000000000174/THOC2.10_4934_10000_0.3069_0.7584_0.4359.png
                gene_name: THOC2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 10 percent done.
TGFB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.645486e-01	ci left: 4.926618e-02	ci right 5.819605e-02	k: 536	n:10000
Cons ci ratio: 1.922228e-03	ci left: 9.965509e-01	ci right 9.985415e-01	k: 9977	n:10000
KS ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
TGFB2   10000 perm   2 sec   (5123 perm/sec)   p_kst 2.130000e-02   p_cons 9.977000e-01   p_joint 5.360000e-02

Joint ci ratio: 1.055611e-01	ci left: 6.108537e-02	ci right 6.794190e-02	k: 1289	n:20000
Cons ci ratio: 1.481695e-03	ci left: 9.963655e-01	ci right 9.978842e-01	k: 19944	n:20000
KS ci ratio: 1.983707e-01	ci left: 1.724818e-02	ci right 2.109342e-02	k: 382	n:20000
TGFB2   20000 perm   4 sec   (4598 perm/sec)   p_kst 1.910000e-02   p_cons 9.972000e-01   p_joint 6.445000e-02

Joint ci ratio: 7.142810e-02	ci left: 8.796527e-02	ci right 9.451414e-02	k: 2736	n:30000
Cons ci ratio: 1.013069e-03	ci left: 9.974639e-01	ci right 9.985026e-01	k: 29941	n:30000
KS ci ratio: 1.585573e-01	ci left: 1.838165e-02	ci right 2.157893e-02	k: 598	n:30000
TGFB2   30000 perm   7 sec   (4378 perm/sec)   p_kst 1.993333e-02   p_cons 9.980333e-01   p_joint 9.120000e-02

Joint ci ratio: 8.266407e-02	ci left: 5.102060e-02	ci right 5.544454e-02	k: 2128	n:40000
Cons ci ratio: 8.437560e-04	ci left: 9.977059e-01	ci right 9.985692e-01	k: 39927	n:40000
KS ci ratio: 1.363314e-01	ci left: 1.886790e-02	ci right 2.165236e-02	k: 809	n:40000
TGFB2   40000 perm   9 sec   (4232 perm/sec)   p_kst 2.022500e-02   p_cons 9.981750e-01   p_joint 5.320000e-02

Joint ci ratio: 7.462456e-02	ci left: 5.034498e-02	ci right 5.426721e-02	k: 2614	n:50000
Cons ci ratio: 7.444008e-04	ci left: 9.978100e-01	ci right 9.985703e-01	k: 49911	n:50000
KS ci ratio: 1.244395e-01	ci left: 1.824778e-02	ci right 2.068846e-02	k: 972	n:50000
TGFB2   50000 perm   12 sec   (4133 perm/sec)   p_kst 1.944000e-02   p_cons 9.982200e-01   p_joint 5.228000e-02

Joint ci ratio: 7.317127e-02	ci left: 4.397718e-02	ci right 4.733361e-02	k: 2738	n:60000
Cons ci ratio: 6.763885e-04	ci left: 9.978637e-01	ci right 9.985534e-01	k: 59894	n:60000
KS ci ratio: 1.124535e-01	ci left: 1.873264e-02	ci right 2.098081e-02	k: 1190	n:60000
TGFB2   60000 perm   15 sec   (4044 perm/sec)   p_kst 1.983333e-02   p_cons 9.982333e-01   p_joint 4.563333e-02

Joint ci ratio: 6.748391e-02	ci left: 4.443173e-02	ci right 4.754890e-02	k: 3218	n:70000
Cons ci ratio: 6.341251e-04	ci left: 9.978417e-01	ci right 9.984873e-01	k: 69873	n:70000
KS ci ratio: 1.043227e-01	ci left: 1.873902e-02	ci right 2.081535e-02	k: 1383	n:70000
TGFB2   70000 perm   18 sec   (3965 perm/sec)   p_kst 1.975714e-02   p_cons 9.981857e-01   p_joint 4.597143e-02

Joint ci ratio: 6.141968e-02	ci left: 4.695996e-02	ci right 4.994790e-02	k: 3875	n:80000
Cons ci ratio: 5.905551e-04	ci left: 9.978812e-01	ci right 9.984818e-01	k: 79856	n:80000
KS ci ratio: 9.757602e-02	ci left: 1.880922e-02	ci right 2.075082e-02	k: 1581	n:80000
TGFB2   80000 perm   21 sec   (3889 perm/sec)   p_kst 1.976250e-02   p_cons 9.982000e-01   p_joint 4.843750e-02

Outputting figure to mutsig2_images.part000000000174/TGFB2.9_1361_80000_0.019762_0.9982_0.048438.png
                gene_name: TGFB2
               theta_stop: 0.098 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 12 percent done.
TGFBR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.586320e-02	ci left: 5.344770e-01	ci right 5.540972e-01	k: 5443	n:10000
Cons ci ratio: 5.091111e-02	ci left: 3.626146e-01	ci right 3.816599e-01	k: 3721	n:10000
KS ci ratio: 3.871893e-02	ci left: 4.962503e-01	ci right 5.159461e-01	k: 5061	n:10000
TGFBR1   10000 perm   2 sec   (5169 perm/sec)   p_kst 5.061000e-01   p_cons 3.721000e-01   p_joint 5.443000e-01

Outputting figure to mutsig2_images.part000000000174/TGFBR1.9_1548_10000_0.5061_0.3721_0.5443.png
                gene_name: TGFBR1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 13 percent done.
TGM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.911164e-02	ci left: 2.349160e-01	ci right 2.518337e-01	k: 2433	n:10000
Cons ci ratio: 8.432283e-02	ci left: 1.701542e-01	ci right 1.852341e-01	k: 1776	n:10000
KS ci ratio: 6.276574e-02	ci left: 2.717099e-01	ci right 2.894181e-01	k: 2805	n:10000
TGM5   10000 perm   2 sec   (4844 perm/sec)   p_kst 2.805000e-01   p_cons 1.776000e-01   p_joint 2.433000e-01

Outputting figure to mutsig2_images.part000000000174/TGM5.9_2215_10000_0.2805_0.1776_0.2433.png
                gene_name: TGM5
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 15 percent done.
THEMIS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.786148e-02	ci left: 8.205599e-01	ci right 8.354485e-01	k: 8281	n:10000
Cons ci ratio: 4.594381e-02	ci left: 4.114968e-01	ci right 4.309491e-01	k: 4212	n:10000
KS ci ratio: 3.156504e-02	ci left: 5.969456e-01	ci right 6.161923e-01	k: 6066	n:10000
THEMIS   10000 perm   2 sec   (4622 perm/sec)   p_kst 6.066000e-01   p_cons 4.212000e-01   p_joint 8.281000e-01

Outputting figure to mutsig2_images.part000000000174/THEMIS.9_2071_10000_0.6066_0.4212_0.8281.png
                gene_name: THEMIS
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 17 percent done.
TGFBR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.388375e-02	ci left: 5.625333e-01	ci right 5.820246e-01	k: 5723	n:10000
Cons ci ratio: 2.987106e-02	ci left: 6.230635e-01	ci right 6.420592e-01	k: 6326	n:10000
KS ci ratio: 4.386771e-02	ci left: 4.341296e-01	ci right 4.537031e-01	k: 4439	n:10000
TGFBR3   10000 perm   2 sec   (4956 perm/sec)   p_kst 4.439000e-01   p_cons 6.326000e-01   p_joint 5.723000e-01

Outputting figure to mutsig2_images.part000000000174/TGFBR3.8_2620_10000_0.4439_0.6326_0.5723.png
                gene_name: TGFBR3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 18 percent done.
TGFBR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
Cons ci ratio: 9.791669e-01	ci left: 8.397740e-04	ci right 2.472817e-03	k: 15	n:10000
KS ci ratio: 1.131817e-01	ci left: 1.010066e-01	ci right 1.132234e-01	k: 1070	n:10000
TGFBR2   10000 perm   2 sec   (4809 perm/sec)   p_kst 1.070000e-01   p_cons 1.500000e-03   p_joint 1.080000e-02

Joint ci ratio: 2.170249e-01	ci left: 1.430667e-02	ci right 1.783606e-02	k: 320	n:20000
Cons ci ratio: 6.042186e-01	ci left: 1.471505e-03	ci right 2.780040e-03	k: 41	n:20000
KS ci ratio: 7.974153e-02	ci left: 1.034850e-01	ci right 1.121294e-01	k: 2155	n:20000
TGFBR2   20000 perm   5 sec   (4375 perm/sec)   p_kst 1.077500e-01   p_cons 2.050000e-03   p_joint 1.600000e-02

Joint ci ratio: 2.197008e-01	ci left: 9.345984e-03	ci right 1.168360e-02	k: 314	n:30000
Cons ci ratio: 5.329553e-01	ci left: 1.323626e-03	ci right 2.310215e-03	k: 53	n:30000
KS ci ratio: 6.479514e-02	ci left: 1.051991e-01	ci right 1.122768e-01	k: 3261	n:30000
TGFBR2   30000 perm   7 sec   (4197 perm/sec)   p_kst 1.087000e-01   p_cons 1.766667e-03   p_joint 1.046667e-02

Joint ci ratio: 2.381987e-01	ci left: 5.924020e-03	ci right 7.548834e-03	k: 268	n:40000
Cons ci ratio: 4.647996e-01	ci left: 1.364457e-03	ci right 2.210510e-03	k: 70	n:40000
KS ci ratio: 5.629855e-02	ci left: 1.050484e-01	ci right 1.111586e-01	k: 4323	n:40000
TGFBR2   40000 perm   10 sec   (3967 perm/sec)   p_kst 1.080750e-01   p_cons 1.750000e-03   p_joint 6.700000e-03

Joint ci ratio: 1.904695e-01	ci left: 7.599625e-03	ci right 9.218228e-03	k: 419	n:50000
Cons ci ratio: 4.151451e-01	ci left: 1.411803e-03	ci right 2.167926e-03	k: 88	n:50000
KS ci ratio: 5.223282e-02	ci left: 9.858944e-02	ci right 1.038970e-01	k: 5061	n:50000
TGFBR2   50000 perm   13 sec   (3887 perm/sec)   p_kst 1.012200e-01   p_cons 1.760000e-03   p_joint 8.380000e-03

Joint ci ratio: 1.356176e-01	ci left: 1.280124e-02	ci right 1.467957e-02	k: 823	n:60000
Cons ci ratio: 3.251420e-01	ci left: 2.024388e-03	ci right 2.824957e-03	k: 144	n:60000
KS ci ratio: 4.780633e-02	ci left: 9.835258e-02	ci right 1.031861e-01	k: 6045	n:60000
TGFBR2   60000 perm   16 sec   (3803 perm/sec)   p_kst 1.007500e-01   p_cons 2.400000e-03   p_joint 1.371667e-02

Joint ci ratio: 1.305598e-01	ci left: 1.188359e-02	ci right 1.355717e-02	k: 889	n:70000
Cons ci ratio: 3.057396e-01	ci left: 1.985142e-03	ci right 2.714234e-03	k: 163	n:70000
KS ci ratio: 4.422409e-02	ci left: 9.867818e-02	ci right 1.031550e-01	k: 7063	n:70000
TGFBR2   70000 perm   19 sec   (3745 perm/sec)   p_kst 1.009000e-01   p_cons 2.328571e-03   p_joint 1.270000e-02

Joint ci ratio: 1.049569e-01	ci left: 1.623728e-02	ci right 1.804798e-02	k: 1370	n:80000
Cons ci ratio: 2.855575e-01	ci left: 2.014779e-03	ci right 2.697113e-03	k: 187	n:80000
KS ci ratio: 4.129152e-02	ci left: 9.915550e-02	ci right 1.033485e-01	k: 8099	n:80000
TGFBR2   80000 perm   22 sec   (3683 perm/sec)   p_kst 1.012375e-01   p_cons 2.337500e-03   p_joint 1.712500e-02

Joint ci ratio: 1.265079e-01	ci left: 9.887377e-03	ci right 1.123334e-02	k: 949	n:90000
Cons ci ratio: 2.728051e-01	ci left: 1.976914e-03	ci right 2.611404e-03	k: 205	n:90000
KS ci ratio: 3.828465e-02	ci left: 1.023324e-01	ci right 1.063376e-01	k: 9389	n:90000
TGFBR2   90000 perm   25 sec   (3603 perm/sec)   p_kst 1.043222e-01   p_cons 2.277778e-03   p_joint 1.054444e-02

Joint ci ratio: 9.981167e-02	ci left: 1.443127e-02	ci right 1.595704e-02	k: 1518	n:100000
Cons ci ratio: 2.581784e-01	ci left: 2.003263e-03	ci right 2.606186e-03	k: 229	n:100000
KS ci ratio: 3.642600e-02	ci left: 1.018963e-01	ci right 1.056867e-01	k: 10378	n:100000
TGFBR2   100000 perm   28 sec   (3550 perm/sec)   p_kst 1.037800e-01   p_cons 2.290000e-03   p_joint 1.518000e-02

Joint ci ratio: 9.719181e-02	ci left: 1.386396e-02	ci right 1.528907e-02	k: 1602	n:110000
Cons ci ratio: 2.451941e-01	ci left: 2.034098e-03	ci right 2.610826e-03	k: 254	n:110000
KS ci ratio: 3.462923e-02	ci left: 1.025267e-01	ci right 1.061487e-01	k: 11476	n:110000
TGFBR2   110000 perm   32 sec   (3476 perm/sec)   p_kst 1.043273e-01   p_cons 2.309091e-03   p_joint 1.456364e-02

Joint ci ratio: 9.528286e-02	ci left: 1.324519e-02	ci right 1.457845e-02	k: 1668	n:120000
Cons ci ratio: 2.365444e-01	ci left: 2.013367e-03	ci right 2.561130e-03	k: 273	n:120000
KS ci ratio: 3.403323e-02	ci left: 9.785328e-02	ci right 1.012494e-01	k: 11945	n:120000
TGFBR2   120000 perm   35 sec   (3429 perm/sec)   p_kst 9.954167e-02   p_cons 2.275000e-03   p_joint 1.390000e-02

Joint ci ratio: 9.739469e-02	ci left: 1.170789e-02	ci right 1.291401e-02	k: 1599	n:130000
Cons ci ratio: 2.256825e-01	ci left: 2.054170e-03	ci right 2.583805e-03	k: 300	n:130000
KS ci ratio: 3.273391e-02	ci left: 9.772522e-02	ci right 1.009850e-01	k: 12915	n:130000
TGFBR2   130000 perm   38 sec   (3384 perm/sec)   p_kst 9.934615e-02   p_cons 2.307692e-03   p_joint 1.230000e-02

Joint ci ratio: 8.543567e-02	ci left: 1.418096e-02	ci right 1.545354e-02	k: 2073	n:140000
Cons ci ratio: 2.206176e-01	ci left: 2.001849e-03	ci right 2.504837e-03	k: 314	n:140000
KS ci ratio: 3.155898e-02	ci left: 9.769562e-02	ci right 1.008353e-01	k: 13896	n:140000
TGFBR2   140000 perm   42 sec   (3332 perm/sec)   p_kst 9.925714e-02   p_cons 2.242857e-03   p_joint 1.480714e-02

Joint ci ratio: 8.282564e-02	ci left: 1.410355e-02	ci right 1.532864e-02	k: 2206	n:150000
Cons ci ratio: 2.132953e-01	ci left: 2.007091e-03	ci right 2.492470e-03	k: 336	n:150000
KS ci ratio: 3.042839e-02	ci left: 9.810218e-02	ci right 1.011400e-01	k: 14942	n:150000
TGFBR2   150000 perm   46 sec   (3281 perm/sec)   p_kst 9.961333e-02   p_cons 2.240000e-03   p_joint 1.470667e-02

Joint ci ratio: 8.690624e-02	ci left: 1.201026e-02	ci right 1.310751e-02	k: 2008	n:160000
Cons ci ratio: 2.078204e-01	ci left: 1.988215e-03	ci right 2.455117e-03	k: 354	n:160000
KS ci ratio: 2.944288e-02	ci left: 9.826717e-02	ci right 1.012099e-01	k: 15957	n:160000
TGFBR2   160000 perm   49 sec   (3235 perm/sec)   p_kst 9.973125e-02   p_cons 2.212500e-03   p_joint 1.255000e-02

Joint ci ratio: 8.432270e-02	ci left: 1.202332e-02	ci right 1.308751e-02	k: 2133	n:170000
Cons ci ratio: 2.032935e-01	ci left: 1.960531e-03	ci right 2.409657e-03	k: 370	n:170000
KS ci ratio: 2.855573e-02	ci left: 9.836154e-02	ci right 1.012168e-01	k: 16963	n:170000
TGFBR2   170000 perm   53 sec   (3189 perm/sec)   p_kst 9.978235e-02   p_cons 2.176471e-03   p_joint 1.254706e-02

Joint ci ratio: 8.415318e-02	ci left: 1.140959e-02	ci right 1.241733e-02	k: 2143	n:180000
Cons ci ratio: 1.985365e-01	ci left: 1.946581e-03	ci right 2.380814e-03	k: 388	n:180000
KS ci ratio: 2.769887e-02	ci left: 9.873924e-02	ci right 1.015181e-01	k: 18022	n:180000
TGFBR2   180000 perm   57 sec   (3148 perm/sec)   p_kst 1.001222e-01   p_cons 2.155556e-03   p_joint 1.190556e-02

Joint ci ratio: 9.054497e-02	ci left: 9.325902e-03	ci right 1.021547e-02	k: 1855	n:190000
Cons ci ratio: 1.919828e-01	ci left: 1.979292e-03	ci right 2.404546e-03	k: 415	n:190000
KS ci ratio: 2.694773e-02	ci left: 9.885857e-02	ci right 1.015642e-01	k: 19039	n:190000
TGFBR2   190000 perm   61 sec   (3105 perm/sec)   p_kst 1.002053e-01   p_cons 2.184211e-03   p_joint 9.763158e-03

Joint ci ratio: 8.822234e-02	ci left: 9.343546e-03	ci right 1.021075e-02	k: 1954	n:200000
Cons ci ratio: 1.864603e-01	ci left: 1.999409e-03	ci right 2.415230e-03	k: 440	n:200000
KS ci ratio: 2.624947e-02	ci left: 9.900168e-02	ci right 1.016399e-01	k: 20063	n:200000
TGFBR2   200000 perm   65 sec   (3066 perm/sec)   p_kst 1.003150e-01   p_cons 2.200000e-03   p_joint 9.770000e-03

Joint ci ratio: 8.046147e-02	ci left: 1.072628e-02	ci right 1.163015e-02	k: 2346	n:210000
Cons ci ratio: 1.804210e-01	ci left: 2.040501e-03	ci right 2.449623e-03	k: 470	n:210000
KS ci ratio: 2.562443e-02	ci left: 9.898046e-02	ci right 1.015544e-01	k: 21055	n:210000
TGFBR2   210000 perm   69 sec   (3023 perm/sec)   p_kst 1.002619e-01   p_cons 2.238095e-03   p_joint 1.117143e-02

Joint ci ratio: 8.020626e-02	ci left: 1.030990e-02	ci right 1.117579e-02	k: 2362	n:220000
Cons ci ratio: 1.770710e-01	ci left: 2.025908e-03	ci right 2.423753e-03	k: 488	n:220000
KS ci ratio: 2.501177e-02	ci left: 9.917882e-02	ci right 1.016954e-01	k: 22095	n:220000
TGFBR2   220000 perm   74 sec   (2982 perm/sec)   p_kst 1.004318e-01   p_cons 2.218182e-03   p_joint 1.073636e-02

Joint ci ratio: 8.043180e-02	ci left: 9.810415e-03	ci right 1.063678e-02	k: 2350	n:230000
Cons ci ratio: 1.730479e-01	ci left: 2.033444e-03	ci right 2.422749e-03	k: 511	n:230000
KS ci ratio: 2.447045e-02	ci left: 9.914438e-02	ci right 1.016048e-01	k: 23085	n:230000
TGFBR2   230000 perm   78 sec   (2940 perm/sec)   p_kst 1.003696e-01   p_cons 2.221739e-03   p_joint 1.021739e-02

Joint ci ratio: 7.686431e-02	ci left: 1.030856e-02	ci right 1.113665e-02	k: 2572	n:240000
Cons ci ratio: 1.688133e-01	ci left: 2.052418e-03	ci right 2.434762e-03	k: 537	n:240000
KS ci ratio: 2.396006e-02	ci left: 9.913408e-02	ci right 1.015423e-01	k: 24080	n:240000
TGFBR2   240000 perm   83 sec   (2902 perm/sec)   p_kst 1.003333e-01   p_cons 2.237500e-03   p_joint 1.071667e-02

Joint ci ratio: 7.655098e-02	ci left: 9.982467e-03	ci right 1.078095e-02	k: 2594	n:250000
Cons ci ratio: 1.640031e-01	ci left: 2.092995e-03	ci right 2.470692e-03	k: 569	n:250000
KS ci ratio: 2.346889e-02	ci left: 9.921263e-02	ci right 1.015726e-01	k: 25097	n:250000
TGFBR2   250000 perm   87 sec   (2866 perm/sec)   p_kst 1.003880e-01   p_cons 2.276000e-03   p_joint 1.037600e-02

Joint ci ratio: 7.289544e-02	ci left: 1.059884e-02	ci right 1.140442e-02	k: 2859	n:260000
Cons ci ratio: 1.593169e-01	ci left: 2.137979e-03	ci right 2.511715e-03	k: 603	n:260000
KS ci ratio: 2.299841e-02	ci left: 9.935066e-02	ci right 1.016659e-01	k: 26131	n:260000
TGFBR2   260000 perm   92 sec   (2834 perm/sec)   p_kst 1.005038e-01   p_cons 2.319231e-03   p_joint 1.099615e-02

Joint ci ratio: 7.232487e-02	ci left: 1.037352e-02	ci right 1.115555e-02	k: 2905	n:270000
Cons ci ratio: 1.561182e-01	ci left: 2.147733e-03	ci right 2.514932e-03	k: 628	n:270000
KS ci ratio: 2.259307e-02	ci left: 9.917672e-02	ci right 1.014467e-01	k: 27083	n:270000
TGFBR2   270000 perm   96 sec   (2801 perm/sec)   p_kst 1.003074e-01   p_cons 2.325926e-03   p_joint 1.075926e-02

Joint ci ratio: 7.293729e-02	ci left: 9.838133e-03	ci right 1.058634e-02	k: 2858	n:280000
Cons ci ratio: 1.535762e-01	ci left: 2.143122e-03	ci right 2.503017e-03	k: 649	n:280000
KS ci ratio: 2.219435e-02	ci left: 9.912927e-02	ci right 1.013576e-01	k: 28067	n:280000
TGFBR2   280000 perm   101 sec   (2769 perm/sec)   p_kst 1.002393e-01   p_cons 2.317857e-03   p_joint 1.020714e-02

Joint ci ratio: 7.264295e-02	ci left: 9.580093e-03	ci right 1.030561e-02	k: 2882	n:290000
Cons ci ratio: 1.514943e-01	ci left: 2.128920e-03	ci right 2.481144e-03	k: 667	n:290000
KS ci ratio: 2.181769e-02	ci left: 9.907169e-02	ci right 1.012604e-01	k: 29047	n:290000
TGFBR2   290000 perm   106 sec   (2737 perm/sec)   p_kst 1.001621e-01   p_cons 2.300000e-03   p_joint 9.937931e-03

Joint ci ratio: 7.119823e-02	ci left: 9.647028e-03	ci right 1.036249e-02	k: 3000	n:300000
Cons ci ratio: 1.482012e-01	ci left: 2.154209e-03	ci right 2.502183e-03	k: 697	n:300000
KS ci ratio: 2.141956e-02	ci left: 9.935331e-02	ci right 1.015077e-01	k: 30128	n:300000
TGFBR2   300000 perm   111 sec   (2706 perm/sec)   p_kst 1.004267e-01   p_cons 2.323333e-03   p_joint 1.000000e-02

Joint ci ratio: 5.407214e-02	ci left: 1.621998e-02	ci right 1.712457e-02	k: 5167	n:310000
Cons ci ratio: 1.386747e-01	ci left: 2.392644e-03	ci right 2.752239e-03	k: 796	n:310000
KS ci ratio: 2.104920e-02	ci left: 9.955931e-02	ci right 1.016804e-01	k: 31191	n:310000
TGFBR2   310000 perm   116 sec   (2676 perm/sec)   p_kst 1.006161e-01   p_cons 2.567742e-03   p_joint 1.666774e-02

Joint ci ratio: 5.169304e-02	ci left: 1.719658e-02	ci right 1.811218e-02	k: 5648	n:320000
Cons ci ratio: 1.365498e-01	ci left: 2.393309e-03	ci right 2.747045e-03	k: 821	n:320000
KS ci ratio: 2.072923e-02	ci left: 9.947588e-02	ci right 1.015626e-01	k: 32165	n:320000
TGFBR2   320000 perm   121 sec   (2647 perm/sec)   p_kst 1.005156e-01   p_cons 2.565625e-03   p_joint 1.765000e-02

Joint ci ratio: 5.251692e-02	ci left: 1.616681e-02	ci right 1.704171e-02	k: 5478	n:330000
Cons ci ratio: 1.332636e-01	ci left: 2.440838e-03	ci right 2.792229e-03	k: 862	n:330000
KS ci ratio: 2.040288e-02	ci left: 9.957873e-02	ci right 1.016344e-01	k: 33199	n:330000
TGFBR2   330000 perm   126 sec   (2617 perm/sec)   p_kst 1.006030e-01   p_cons 2.612121e-03   p_joint 1.660000e-02

Joint ci ratio: 5.166922e-02	ci left: 1.621674e-02	ci right 1.707976e-02	k: 5659	n:340000
Cons ci ratio: 1.311526e-01	ci left: 2.448679e-03	ci right 2.795179e-03	k: 890	n:340000
KS ci ratio: 2.010585e-02	ci left: 9.954694e-02	ci right 1.015716e-01	k: 34189	n:340000
TGFBR2   340000 perm   132 sec   (2585 perm/sec)   p_kst 1.005559e-01   p_cons 2.617647e-03   p_joint 1.664412e-02

Joint ci ratio: 5.223319e-02	ci left: 1.542330e-02	ci right 1.625331e-02	k: 5542	n:350000
Cons ci ratio: 1.287880e-01	ci left: 2.469938e-03	ci right 2.812665e-03	k: 923	n:350000
KS ci ratio: 1.980015e-02	ci left: 9.971060e-02	ci right 1.017074e-01	k: 35247	n:350000
TGFBR2   350000 perm   137 sec   (2551 perm/sec)   p_kst 1.007057e-01   p_cons 2.637143e-03   p_joint 1.583429e-02

Joint ci ratio: 5.156409e-02	ci left: 1.539242e-02	ci right 1.620985e-02	k: 5687	n:360000
Cons ci ratio: 1.276210e-01	ci left: 2.447035e-03	ci right 2.783273e-03	k: 940	n:360000
KS ci ratio: 1.953793e-02	ci left: 9.958882e-02	ci right 1.015565e-01	k: 36205	n:360000
TGFBR2   360000 perm   143 sec   (2519 perm/sec)   p_kst 1.005694e-01   p_cons 2.611111e-03   p_joint 1.579722e-02

Joint ci ratio: 5.117020e-02	ci left: 1.521382e-02	ci right 1.601541e-02	k: 5776	n:370000
Cons ci ratio: 1.254393e-01	ci left: 2.467266e-03	ci right 2.800058e-03	k: 973	n:370000
KS ci ratio: 1.926683e-02	ci left: 9.965140e-02	ci right 1.015927e-01	k: 37229	n:370000
TGFBR2   370000 perm   149 sec   (2487 perm/sec)   p_kst 1.006189e-01   p_cons 2.629730e-03   p_joint 1.561081e-02

Joint ci ratio: 5.058403e-02	ci left: 1.516419e-02	ci right 1.595375e-02	k: 5911	n:380000
Cons ci ratio: 1.240469e-01	ci left: 2.458426e-03	ci right 2.786074e-03	k: 995	n:380000
KS ci ratio: 1.902469e-02	ci left: 9.954053e-02	ci right 1.014550e-01	k: 38188	n:380000
TGFBR2   380000 perm   155 sec   (2457 perm/sec)   p_kst 1.004947e-01   p_cons 2.618421e-03   p_joint 1.555526e-02

Joint ci ratio: 5.079970e-02	ci left: 1.465629e-02	ci right 1.542274e-02	k: 5864	n:390000
Cons ci ratio: 1.218626e-01	ci left: 2.484860e-03	ci right 2.809779e-03	k: 1031	n:390000
KS ci ratio: 1.877654e-02	ci left: 9.957849e-02	ci right 1.014685e-01	k: 39203	n:390000
TGFBR2   390000 perm   161 sec   (2429 perm/sec)   p_kst 1.005205e-01   p_cons 2.643590e-03   p_joint 1.503590e-02

Joint ci ratio: 5.016655e-02	ci left: 1.465768e-02	ci right 1.541437e-02	k: 6013	n:400000
Cons ci ratio: 1.202421e-01	ci left: 2.490619e-03	ci right 2.811653e-03	k: 1059	n:400000
KS ci ratio: 1.853682e-02	ci left: 9.962466e-02	ci right 1.014911e-01	k: 40222	n:400000
TGFBR2   400000 perm   167 sec   (2402 perm/sec)   p_kst 1.005550e-01   p_cons 2.647500e-03   p_joint 1.503250e-02

Joint ci ratio: 6.193600e-02	ci left: 9.375828e-03	ci right 9.977473e-03	k: 3966	n:410000
Cons ci ratio: 1.405864e-01	ci left: 1.759601e-03	ci right 2.028004e-03	k: 775	n:410000
KS ci ratio: 1.830778e-02	ci left: 9.965173e-02	ci right 1.014954e-01	k: 41234	n:410000
TGFBR2   410000 perm   173 sec   (2374 perm/sec)   p_kst 1.005707e-01   p_cons 1.890244e-03   p_joint 9.673171e-03

Joint ci ratio: 6.122281e-02	ci left: 9.370613e-03	ci right 9.964753e-03	k: 4059	n:420000
Cons ci ratio: 1.387216e-01	ci left: 1.765959e-03	ci right 2.031464e-03	k: 796	n:420000
KS ci ratio: 1.809416e-02	ci left: 9.960650e-02	ci right 1.014276e-01	k: 42216	n:420000
TGFBR2   420000 perm   179 sec   (2347 perm/sec)   p_kst 1.005143e-01   p_cons 1.895238e-03   p_joint 9.664286e-03

Joint ci ratio: 5.911970e-02	ci left: 9.821612e-03	ci right 1.042223e-02	k: 4351	n:430000
Cons ci ratio: 1.369290e-01	ci left: 1.772044e-03	ci right 2.034740e-03	k: 817	n:430000
KS ci ratio: 1.788510e-02	ci left: 9.959129e-02	ci right 1.013908e-01	k: 43210	n:430000
TGFBR2   430000 perm   185 sec   (2324 perm/sec)   p_kst 1.004884e-01   p_cons 1.900000e-03   p_joint 1.011860e-02

Joint ci ratio: 5.900345e-02	ci left: 9.638672e-03	ci right 1.022690e-02	k: 4369	n:440000
Cons ci ratio: 1.354470e-01	ci left: 1.771286e-03	ci right 2.030798e-03	k: 835	n:440000
KS ci ratio: 1.768401e-02	ci left: 9.956783e-02	ci right 1.013465e-01	k: 44200	n:440000
TGFBR2   440000 perm   191 sec   (2302 perm/sec)   p_kst 1.004545e-01   p_cons 1.897727e-03   p_joint 9.929545e-03

Joint ci ratio: 5.697157e-02	ci left: 1.011440e-02	ci right 1.070971e-02	k: 4684	n:450000
Cons ci ratio: 1.335430e-01	ci left: 1.783463e-03	ci right 2.040796e-03	k: 859	n:450000
KS ci ratio: 1.749794e-02	ci left: 9.945919e-02	ci right 1.012171e-01	k: 45151	n:450000
TGFBR2   450000 perm   197 sec   (2280 perm/sec)   p_kst 1.003356e-01   p_cons 1.908889e-03   p_joint 1.040889e-02

Joint ci ratio: 5.745073e-02	ci left: 9.731614e-03	ci right 1.030937e-02	k: 4608	n:460000
Cons ci ratio: 1.325458e-01	ci left: 1.772012e-03	ci right 2.025632e-03	k: 872	n:460000
KS ci ratio: 1.731825e-02	ci left: 9.934888e-02	ci right 1.010866e-01	k: 46099	n:460000
TGFBR2   460000 perm   204 sec   (2259 perm/sec)   p_kst 1.002152e-01   p_cons 1.895652e-03   p_joint 1.001739e-02

Joint ci ratio: 5.719432e-02	ci left: 9.612622e-03	ci right 1.018068e-02	k: 4650	n:470000
Cons ci ratio: 1.317197e-01	ci left: 1.756939e-03	ci right 2.006712e-03	k: 883	n:470000
KS ci ratio: 1.713164e-02	ci left: 9.937264e-02	ci right 1.010919e-01	k: 47108	n:470000
TGFBR2   470000 perm   210 sec   (2238 perm/sec)   p_kst 1.002298e-01   p_cons 1.878723e-03   p_joint 9.893617e-03

Joint ci ratio: 5.731237e-02	ci left: 9.375364e-03	ci right 9.930579e-03	k: 4632	n:480000
Cons ci ratio: 1.300383e-01	ci left: 1.766685e-03	ci right 2.014390e-03	k: 906	n:480000
KS ci ratio: 1.695682e-02	ci left: 9.933325e-02	ci right 1.010341e-01	k: 48087	n:480000
TGFBR2   480000 perm   217 sec   (2217 perm/sec)   p_kst 1.001812e-01   p_cons 1.887500e-03   p_joint 9.650000e-03

Joint ci ratio: 5.724950e-02	ci left: 9.206134e-03	ci right 9.750710e-03	k: 4643	n:490000
Cons ci ratio: 1.289767e-01	ci left: 1.760250e-03	ci right 2.004884e-03	k: 921	n:490000
KS ci ratio: 1.677641e-02	ci left: 9.941144e-02	ci right 1.010953e-01	k: 49123	n:490000
TGFBR2   490000 perm   223 sec   (2196 perm/sec)   p_kst 1.002510e-01   p_cons 1.879592e-03   p_joint 9.475510e-03

Joint ci ratio: 5.475144e-02	ci left: 9.870064e-03	ci right 1.042763e-02	k: 5073	n:500000
Cons ci ratio: 1.277359e-01	ci left: 1.759889e-03	ci right 2.001941e-03	k: 939	n:500000
KS ci ratio: 1.660882e-02	ci left: 9.940889e-02	ci right 1.010757e-01	k: 50120	n:500000
TGFBR2   500000 perm   230 sec   (2176 perm/sec)   p_kst 1.002400e-01   p_cons 1.878000e-03   p_joint 1.014600e-02

Joint ci ratio: 5.531011e-02	ci left: 9.483101e-03	ci right 1.002445e-02	k: 4973	n:510000
Cons ci ratio: 1.266629e-01	ci left: 1.755755e-03	ci right 1.995058e-03	k: 955	n:510000
KS ci ratio: 1.645313e-02	ci left: 9.933032e-02	ci right 1.009801e-01	k: 51078	n:510000
TGFBR2   510000 perm   236 sec   (2157 perm/sec)   p_kst 1.001529e-01   p_cons 1.872549e-03   p_joint 9.750980e-03

Joint ci ratio: 5.276147e-02	ci left: 1.022662e-02	ci right 1.078270e-02	k: 5461	n:520000
Cons ci ratio: 1.254871e-01	ci left: 1.755514e-03	ci right 1.992398e-03	k: 973	n:520000
KS ci ratio: 1.629147e-02	ci left: 9.936790e-02	ci right 1.010019e-01	k: 52095	n:520000
TGFBR2   520000 perm   243 sec   (2137 perm/sec)   p_kst 1.001827e-01   p_cons 1.871154e-03   p_joint 1.050192e-02

Joint ci ratio: 5.204935e-02	ci left: 1.031299e-02	ci right 1.086597e-02	k: 5611	n:530000
Cons ci ratio: 1.237203e-01	ci left: 1.773576e-03	ci right 2.009281e-03	k: 1001	n:530000
KS ci ratio: 1.613094e-02	ci left: 9.944362e-02	ci right 1.010626e-01	k: 53133	n:530000
TGFBR2   530000 perm   250 sec   (2118 perm/sec)   p_kst 1.002509e-01   p_cons 1.888679e-03   p_joint 1.058679e-02

Joint ci ratio: 5.175710e-02	ci left: 1.023898e-02	ci right 1.078481e-02	k: 5675	n:540000
Cons ci ratio: 1.222641e-01	ci left: 1.783810e-03	ci right 2.017882e-03	k: 1025	n:540000
KS ci ratio: 1.598113e-02	ci left: 9.944833e-02	ci right 1.010523e-01	k: 54134	n:540000
TGFBR2   540000 perm   258 sec   (2096 perm/sec)   p_kst 1.002481e-01   p_cons 1.898148e-03   p_joint 1.050926e-02

Joint ci ratio: 5.130735e-02	ci left: 1.023229e-02	ci right 1.077289e-02	k: 5775	n:550000
Cons ci ratio: 1.212638e-01	ci left: 1.781344e-03	ci right 2.013044e-03	k: 1042	n:550000
KS ci ratio: 1.583926e-02	ci left: 9.940946e-02	ci right 1.009984e-01	k: 55111	n:550000
TGFBR2   550000 perm   265 sec   (2077 perm/sec)   p_kst 1.002018e-01   p_cons 1.894545e-03   p_joint 1.050000e-02

Joint ci ratio: 5.177614e-02	ci left: 9.869727e-03	ci right 1.039607e-02	k: 5673	n:560000
Cons ci ratio: 1.204016e-01	ci left: 1.775510e-03	ci right 2.004692e-03	k: 1057	n:560000
KS ci ratio: 1.570125e-02	ci left: 9.937026e-02	ci right 1.009446e-01	k: 56087	n:560000
TGFBR2   560000 perm   272 sec   (2059 perm/sec)   p_kst 1.001554e-01   p_cons 1.887500e-03   p_joint 1.013036e-02

Joint ci ratio: 5.140689e-02	ci left: 9.838573e-03	ci right 1.035941e-02	k: 5755	n:570000
Cons ci ratio: 1.189482e-01	ci left: 1.788610e-03	ci right 2.016500e-03	k: 1083	n:570000
KS ci ratio: 1.556845e-02	ci left: 9.931326e-02	ci right 1.008733e-01	k: 57052	n:570000
TGFBR2   570000 perm   279 sec   (2040 perm/sec)   p_kst 1.000912e-01   p_cons 1.900000e-03   p_joint 1.009649e-02

Joint ci ratio: 5.094416e-02	ci left: 9.847662e-03	ci right 1.036415e-02	k: 5860	n:580000
Cons ci ratio: 1.179192e-01	ci left: 1.789560e-03	ci right 2.015461e-03	k: 1102	n:580000
KS ci ratio: 1.544089e-02	ci left: 9.923594e-02	ci right 1.007818e-01	k: 58004	n:580000
TGFBR2   580000 perm   287 sec   (2022 perm/sec)   p_kst 1.000069e-01   p_cons 1.900000e-03   p_joint 1.010345e-02

Joint ci ratio: 5.128100e-02	ci left: 9.555222e-03	ci right 1.005978e-02	k: 5785	n:590000
Cons ci ratio: 1.168644e-01	ci left: 1.792132e-03	ci right 2.016194e-03	k: 1122	n:590000
KS ci ratio: 1.531309e-02	ci left: 9.920015e-02	ci right 1.007326e-01	k: 58979	n:590000
TGFBR2   590000 perm   294 sec   (2004 perm/sec)   p_kst 9.996441e-02   p_cons 1.901695e-03   p_joint 9.805085e-03

Joint ci ratio: 5.086089e-02	ci left: 9.553925e-03	ci right 1.005416e-02	k: 5881	n:600000
Cons ci ratio: 1.158881e-01	ci left: 1.793008e-03	ci right 2.015179e-03	k: 1141	n:600000
KS ci ratio: 1.517759e-02	ci left: 9.929350e-02	ci right 1.008137e-01	k: 60031	n:600000
TGFBR2   600000 perm   302 sec   (1987 perm/sec)   p_kst 1.000517e-01   p_cons 1.901667e-03   p_joint 9.801667e-03

Joint ci ratio: 5.131619e-02	ci left: 9.232187e-03	ci right 9.720030e-03	k: 5779	n:610000
Cons ci ratio: 1.150850e-01	ci left: 1.789086e-03	ci right 2.009130e-03	k: 1157	n:610000
KS ci ratio: 1.504767e-02	ci left: 9.935934e-02	ci right 1.008674e-01	k: 61068	n:610000
TGFBR2   610000 perm   310 sec   (1969 perm/sec)   p_kst 1.001115e-01   p_cons 1.896721e-03   p_joint 9.473770e-03

Joint ci ratio: 5.055754e-02	ci left: 9.360367e-03	ci right 9.847458e-03	k: 5953	n:620000
Cons ci ratio: 1.136696e-01	ci left: 1.805667e-03	ci right 2.024836e-03	k: 1186	n:620000
KS ci ratio: 1.492130e-02	ci left: 9.941989e-02	ci right 1.009161e-01	k: 62103	n:620000
TGFBR2   620000 perm   318 sec   (1953 perm/sec)   p_kst 1.001661e-01   p_cons 1.912903e-03   p_joint 9.601613e-03

Joint ci ratio: 5.018414e-02	ci left: 9.351279e-03	ci right 9.834199e-03	k: 6042	n:630000
Cons ci ratio: 1.127706e-01	ci left: 1.806310e-03	ci right 2.023708e-03	k: 1205	n:630000
KS ci ratio: 1.480315e-02	ci left: 9.941687e-02	ci right 1.009011e-01	k: 63099	n:630000
TGFBR2   630000 perm   325 sec   (1936 perm/sec)   p_kst 1.001571e-01   p_cons 1.912698e-03   p_joint 9.590476e-03

Joint ci ratio: 4.971667e-02	ci left: 9.381069e-03	ci right 9.860886e-03	k: 6156	n:640000
Cons ci ratio: 1.113476e-01	ci left: 1.825167e-03	ci right 2.041881e-03	k: 1236	n:640000
KS ci ratio: 1.468928e-02	ci left: 9.939531e-02	ci right 1.008677e-01	k: 64083	n:640000
TGFBR2   640000 perm   334 sec   (1919 perm/sec)   p_kst 1.001297e-01   p_cons 1.931250e-03   p_joint 9.618750e-03

Joint ci ratio: 4.941341e-02	ci left: 9.352215e-03	ci right 9.827555e-03	k: 6232	n:650000
Cons ci ratio: 1.106789e-01	ci left: 1.819524e-03	ci right 2.034185e-03	k: 1251	n:650000
KS ci ratio: 1.457154e-02	ci left: 9.945419e-02	ci right 1.009155e-01	k: 65119	n:650000
TGFBR2   650000 perm   342 sec   (1903 perm/sec)   p_kst 1.001831e-01   p_cons 1.924615e-03   p_joint 9.587692e-03

Joint ci ratio: 4.891640e-02	ci left: 9.400579e-03	ci right 9.873437e-03	k: 6359	n:660000
Cons ci ratio: 1.098053e-01	ci left: 1.821423e-03	ci right 2.034502e-03	k: 1271	n:660000
KS ci ratio: 1.446314e-02	ci left: 9.942977e-02	ci right 1.008798e-01	k: 66101	n:660000
TGFBR2   660000 perm   350 sec   (1886 perm/sec)   p_kst 1.001530e-01   p_cons 1.925758e-03   p_joint 9.634848e-03

Joint ci ratio: 4.878462e-02	ci left: 9.311863e-03	ci right 9.778960e-03	k: 6394	n:670000
Cons ci ratio: 1.086994e-01	ci left: 1.831983e-03	ci right 2.044002e-03	k: 1297	n:670000
KS ci ratio: 1.435177e-02	ci left: 9.947308e-02	ci right 1.009125e-01	k: 67128	n:670000
TGFBR2   670000 perm   359 sec   (1869 perm/sec)   p_kst 1.001910e-01   p_cons 1.935821e-03   p_joint 9.543284e-03

Joint ci ratio: 4.820924e-02	ci left: 9.397205e-03	ci right 9.862869e-03	k: 6547	n:680000
Cons ci ratio: 1.082010e-01	ci left: 1.822210e-03	ci right 2.032069e-03	k: 1309	n:680000
KS ci ratio: 1.424097e-02	ci left: 9.954007e-02	ci right 1.009692e-01	k: 68172	n:680000
TGFBR2   680000 perm   367 sec   (1852 perm/sec)   p_kst 1.002529e-01   p_cons 1.925000e-03   p_joint 9.627941e-03

Joint ci ratio: 4.787061e-02	ci left: 9.394177e-03	ci right 9.856331e-03	k: 6640	n:690000
Cons ci ratio: 1.073035e-01	ci left: 1.826826e-03	ci right 2.035362e-03	k: 1331	n:690000
KS ci ratio: 1.413791e-02	ci left: 9.953870e-02	ci right 1.009574e-01	k: 69170	n:690000
TGFBR2   690000 perm   376 sec   (1835 perm/sec)   p_kst 1.002464e-01   p_cons 1.928986e-03   p_joint 9.623188e-03

Joint ci ratio: 4.659119e-02	ci left: 9.778113e-03	ci right 1.024595e-02	k: 7007	n:700000
Cons ci ratio: 1.063494e-01	ci left: 1.834099e-03	ci right 2.041486e-03	k: 1355	n:700000
KS ci ratio: 1.403873e-02	ci left: 9.951605e-02	ci right 1.009244e-01	k: 70153	n:700000
TGFBR2   700000 perm   385 sec   (1820 perm/sec)   p_kst 1.002186e-01   p_cons 1.935714e-03   p_joint 1.001000e-02

Joint ci ratio: 4.670232e-02	ci left: 9.595828e-03	ci right 1.005607e-02	k: 6975	n:710000
Cons ci ratio: 1.055736e-01	ci left: 1.835689e-03	ci right 2.041648e-03	k: 1375	n:710000
KS ci ratio: 1.394302e-02	ci left: 9.947582e-02	ci right 1.008739e-01	k: 71123	n:710000
TGFBR2   710000 perm   393 sec   (1805 perm/sec)   p_kst 1.001732e-01   p_cons 1.936620e-03   p_joint 9.823944e-03

Joint ci ratio: 4.473643e-02	ci left: 1.031528e-02	ci right 1.078867e-02	k: 7596	n:720000
Cons ci ratio: 1.045522e-01	ci left: 1.846709e-03	ci right 2.051776e-03	k: 1402	n:720000
KS ci ratio: 1.384370e-02	ci left: 9.950873e-02	ci right 1.008973e-01	k: 72145	n:720000
TGFBR2   720000 perm   402 sec   (1791 perm/sec)   p_kst 1.002014e-01   p_cons 1.947222e-03   p_joint 1.055000e-02

Joint ci ratio: 4.524493e-02	ci left: 9.947739e-03	ci right 1.040959e-02	k: 7429	n:730000
Cons ci ratio: 1.037784e-01	ci left: 1.849429e-03	ci right 2.053186e-03	k: 1423	n:730000
KS ci ratio: 1.374542e-02	ci left: 9.955444e-02	ci right 1.009337e-01	k: 73177	n:730000
TGFBR2   730000 perm   411 sec   (1777 perm/sec)   p_kst 1.002425e-01   p_cons 1.949315e-03   p_joint 1.017671e-02

Joint ci ratio: 4.508592e-02	ci left: 9.884115e-03	ci right 1.034135e-02	k: 7482	n:740000
Cons ci ratio: 1.027723e-01	ci left: 1.861298e-03	ci right 2.064254e-03	k: 1451	n:740000
KS ci ratio: 1.364614e-02	ci left: 9.963936e-02	ci right 1.010097e-01	k: 74239	n:740000
TGFBR2   740000 perm   420 sec   (1764 perm/sec)   p_kst 1.003230e-01   p_cons 1.960811e-03   p_joint 1.011081e-02

Joint ci ratio: 4.482951e-02	ci left: 9.865703e-03	ci right 1.031943e-02	k: 7568	n:750000
Cons ci ratio: 1.020370e-01	ci left: 1.863763e-03	ci right 2.065448e-03	k: 1472	n:750000
KS ci ratio: 1.356009e-02	ci left: 9.957450e-02	ci right 1.009353e-01	k: 75190	n:750000
TGFBR2   750000 perm   428 sec   (1751 perm/sec)   p_kst 1.002533e-01   p_cons 1.962667e-03   p_joint 1.009067e-02

Joint ci ratio: 4.452164e-02	ci left: 9.872506e-03	ci right 1.032334e-02	k: 7673	n:760000
Cons ci ratio: 1.013512e-01	ci left: 1.864887e-03	ci right 2.065255e-03	k: 1492	n:760000
KS ci ratio: 1.347379e-02	ci left: 9.953629e-02	ci right 1.008878e-01	k: 76160	n:760000
TGFBR2   760000 perm   438 sec   (1737 perm/sec)   p_kst 1.002105e-01   p_cons 1.963158e-03   p_joint 1.009605e-02

Joint ci ratio: 4.492544e-02	ci left: 9.570894e-03	ci right 1.001203e-02	k: 7538	n:770000
Cons ci ratio: 1.007458e-01	ci left: 1.863453e-03	ci right 2.062401e-03	k: 1510	n:770000
KS ci ratio: 1.338486e-02	ci left: 9.955608e-02	ci right 1.008989e-01	k: 77174	n:770000
TGFBR2   770000 perm   447 sec   (1723 perm/sec)   p_kst 1.002260e-01   p_cons 1.961039e-03   p_joint 9.789610e-03

Joint ci ratio: 4.450696e-02	ci left: 9.628213e-03	ci right 1.006775e-02	k: 7680	n:780000
Cons ci ratio: 9.995484e-02	ci left: 1.869560e-03	ci right 2.067501e-03	k: 1534	n:780000
KS ci ratio: 1.329673e-02	ci left: 9.958817e-02	ci right 1.009225e-01	k: 78198	n:780000
TGFBR2   780000 perm   456 sec   (1709 perm/sec)   p_kst 1.002538e-01   p_cons 1.966667e-03   p_joint 9.846154e-03

Outputting figure to mutsig2_images.part000000000174/TGFBR2.7_1811_780000_0.10025_0.0019667_0.0098462.png
                gene_name: TGFBR2
               theta_stop: 0.100 
                    nperm: 780000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.0020 
      ci_cons_bounds_left: 0.0019 
     ci_cons_bounds_right: 0.0021 
                  p_joint: 0.0098 
     ci_joint_bounds_left: 0.0096 
    ci_joint_bounds_right: 0.010 

Current progress: 20 percent done.
TGM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.339492e-02	ci left: 5.696526e-01	ci right 5.891012e-01	k: 5794	n:10000
KS ci ratio: 1.773593e-02	ci left: 8.225936e-01	ci right 8.374136e-01	k: 8301	n:10000
TGM3   10000 perm   2 sec   (5278 perm/sec)   p_kst 8.301000e-01   p_cons 5.794000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TGM3.7_2134_10000_0.8301_0.5794_1.png
                gene_name: TGM3
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 22 percent done.
TGM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.258952e-02	ci left: 7.420988e-01	ci right 7.591550e-01	k: 7507	n:10000
Cons ci ratio: 4.565297e-02	ci left: 4.145864e-01	ci right 4.340577e-01	k: 4243	n:10000
KS ci ratio: 2.602805e-02	ci left: 6.848624e-01	ci right 7.030245e-01	k: 6940	n:10000
TGM4   10000 perm   2 sec   (5369 perm/sec)   p_kst 6.940000e-01   p_cons 4.243000e-01   p_joint 7.507000e-01

Outputting figure to mutsig2_images.part000000000174/TGM4.7_2111_10000_0.694_0.4243_0.7507.png
                gene_name: TGM4
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 23 percent done.
TGM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.152427e-01	ci left: 2.863733e-02	ci right 3.563870e-02	k: 320	n:10000
Cons ci ratio: 2.584439e-02	ci left: 6.878865e-01	ci right 7.059987e-01	k: 6970	n:10000
KS ci ratio: 4.090336e-01	ci left: 7.243098e-03	ci right 1.105110e-02	k: 90	n:10000
TGM7   10000 perm   2 sec   (5021 perm/sec)   p_kst 9.000000e-03   p_cons 6.970000e-01   p_joint 3.200000e-02

Joint ci ratio: 1.400379e-01	ci left: 3.505436e-02	ci right 4.038113e-02	k: 753	n:20000
Cons ci ratio: 1.826878e-02	ci left: 6.907286e-01	ci right 7.035141e-01	k: 13943	n:20000
KS ci ratio: 2.671533e-01	ci left: 9.227203e-03	ci right 1.211771e-02	k: 212	n:20000
TGM7   20000 perm   4 sec   (4624 perm/sec)   p_kst 1.060000e-02   p_cons 6.971500e-01   p_joint 3.765000e-02

Joint ci ratio: 1.066815e-01	ci left: 4.076467e-02	ci right 4.539102e-02	k: 1291	n:30000
Cons ci ratio: 1.547525e-02	ci left: 6.760935e-01	ci right 6.866713e-01	k: 20442	n:30000
KS ci ratio: 2.240543e-01	ci left: 8.968019e-03	ci right 1.126168e-02	k: 302	n:30000
TGM7   30000 perm   7 sec   (4415 perm/sec)   p_kst 1.006667e-02   p_cons 6.814000e-01   p_joint 4.303333e-02

Joint ci ratio: 1.366763e-01	ci left: 1.877125e-02	ci right 2.154902e-02	k: 805	n:40000
Cons ci ratio: 1.308128e-02	ci left: 6.872737e-01	ci right 6.963484e-01	k: 27673	n:40000
KS ci ratio: 1.925979e-01	ci left: 9.262315e-03	ci right 1.125974e-02	k: 409	n:40000
TGM7   40000 perm   9 sec   (4276 perm/sec)   p_kst 1.022500e-02   p_cons 6.918250e-01   p_joint 2.012500e-02

Joint ci ratio: 1.248984e-01	ci left: 1.811207e-02	ci right 2.054419e-02	k: 965	n:50000
Cons ci ratio: 1.172732e-02	ci left: 6.867682e-01	ci right 6.948897e-01	k: 34542	n:50000
KS ci ratio: 1.673057e-01	ci left: 9.950851e-03	ci right 1.178660e-02	k: 542	n:50000
TGM7   50000 perm   12 sec   (4173 perm/sec)   p_kst 1.084000e-02   p_cons 6.908400e-01   p_joint 1.930000e-02

Joint ci ratio: 1.183140e-01	ci left: 1.690267e-02	ci right 1.904432e-02	k: 1077	n:60000
Cons ci ratio: 1.071741e-02	ci left: 6.866497e-01	ci right 6.940652e-01	k: 41422	n:60000
KS ci ratio: 1.558540e-01	ci left: 9.619695e-03	ci right 1.126151e-02	k: 625	n:60000
TGM7   60000 perm   15 sec   (4093 perm/sec)   p_kst 1.041667e-02   p_cons 6.903667e-01   p_joint 1.795000e-02

Joint ci ratio: 1.127607e-01	ci left: 1.601361e-02	ci right 1.794101e-02	k: 1187	n:70000
Cons ci ratio: 9.930258e-03	ci left: 6.865876e-01	ci right 6.934538e-01	k: 48302	n:70000
KS ci ratio: 1.457451e-01	ci left: 9.482641e-03	ci right 1.098694e-02	k: 715	n:70000
TGM7   70000 perm   17 sec   (4014 perm/sec)   p_kst 1.021429e-02   p_cons 6.900286e-01   p_joint 1.695714e-02

Joint ci ratio: 1.071652e-01	ci left: 1.556773e-02	ci right 1.734259e-02	k: 1315	n:80000
Cons ci ratio: 9.273797e-03	ci left: 6.875091e-01	ci right 6.939271e-01	k: 55258	n:80000
KS ci ratio: 1.370349e-01	ci left: 9.430754e-03	ci right 1.083011e-02	k: 809	n:80000
TGM7   80000 perm   20 sec   (3932 perm/sec)   p_kst 1.011250e-02   p_cons 6.907250e-01   p_joint 1.643750e-02

Joint ci ratio: 9.825590e-02	ci left: 1.652324e-02	ci right 1.824140e-02	k: 1563	n:90000
Cons ci ratio: 8.748259e-03	ci left: 6.874570e-01	ci right 6.935085e-01	k: 62144	n:90000
KS ci ratio: 1.301571e-01	ci left: 9.327970e-03	ci right 1.063724e-02	k: 897	n:90000
TGM7   90000 perm   23 sec   (3868 perm/sec)   p_kst 9.966667e-03   p_cons 6.904889e-01   p_joint 1.736667e-02

Joint ci ratio: 1.010343e-01	ci left: 1.408019e-02	ci right 1.558815e-02	k: 1482	n:100000
Cons ci ratio: 8.298729e-03	ci left: 6.876443e-01	ci right 6.933846e-01	k: 69052	n:100000
KS ci ratio: 1.229672e-01	ci left: 9.441030e-03	ci right 1.068763e-02	k: 1005	n:100000
TGM7   100000 perm   26 sec   (3802 perm/sec)   p_kst 1.005000e-02   p_cons 6.905200e-01   p_joint 1.482000e-02

Joint ci ratio: 8.958329e-02	ci left: 1.634207e-02	ci right 1.788354e-02	k: 1881	n:110000
Cons ci ratio: 7.661012e-03	ci left: 7.014474e-01	ci right 7.068509e-01	k: 77457	n:110000
KS ci ratio: 1.169037e-01	ci left: 9.526334e-03	ci right 1.071789e-02	k: 1112	n:110000
TGM7   110000 perm   30 sec   (3719 perm/sec)   p_kst 1.010909e-02   p_cons 7.041545e-01   p_joint 1.710000e-02

Joint ci ratio: 7.784948e-02	ci left: 1.988552e-02	ci right 2.150443e-02	k: 2482	n:120000
Cons ci ratio: 7.452338e-03	ci left: 6.948838e-01	ci right 7.000900e-01	k: 83699	n:120000
KS ci ratio: 1.124039e-01	ci left: 9.469046e-03	ci right 1.060482e-02	k: 1203	n:120000
TGM7   120000 perm   33 sec   (3657 perm/sec)   p_kst 1.002500e-02   p_cons 6.974917e-01   p_joint 2.068333e-02

Joint ci ratio: 8.381876e-02	ci left: 1.585214e-02	ci right 1.724646e-02	k: 2150	n:130000
Cons ci ratio: 7.154225e-03	ci left: 6.953263e-01	ci right 7.003264e-01	k: 90718	n:130000
KS ci ratio: 1.075922e-01	ci left: 9.563561e-03	ci right 1.065846e-02	k: 1313	n:130000
TGM7   130000 perm   36 sec   (3600 perm/sec)   p_kst 1.010000e-02   p_cons 6.978308e-01   p_joint 1.653846e-02

Joint ci ratio: 7.090664e-02	ci left: 2.060620e-02	ci right 2.212800e-02	k: 2990	n:140000
Cons ci ratio: 6.889818e-03	ci left: 6.956733e-01	ci right 7.004900e-01	k: 97732	n:140000
KS ci ratio: 1.037554e-01	ci left: 9.568906e-03	ci right 1.062296e-02	k: 1412	n:140000
TGM7   140000 perm   39 sec   (3545 perm/sec)   p_kst 1.008571e-02   p_cons 6.980857e-01   p_joint 2.135714e-02

Joint ci ratio: 7.414528e-02	ci left: 1.761461e-02	ci right 1.897744e-02	k: 2743	n:150000
Cons ci ratio: 6.903549e-03	ci left: 6.801241e-01	ci right 6.848422e-01	k: 102373	n:150000
KS ci ratio: 1.000016e-01	ci left: 9.632651e-03	ci right 1.065308e-02	k: 1520	n:150000
TGM7   150000 perm   43 sec   (3489 perm/sec)   p_kst 1.013333e-02   p_cons 6.824867e-01   p_joint 1.828667e-02

Joint ci ratio: 7.268038e-02	ci left: 1.720684e-02	ci right 1.851071e-02	k: 2856	n:160000
Cons ci ratio: 6.691070e-03	ci left: 6.797618e-01	ci right 6.843316e-01	k: 109128	n:160000
KS ci ratio: 9.741626e-02	ci left: 9.530433e-03	ci right 1.051244e-02	k: 1602	n:160000
TGM7   160000 perm   47 sec   (3438 perm/sec)   p_kst 1.001250e-02   p_cons 6.820500e-01   p_joint 1.785000e-02

Outputting figure to mutsig2_images.part000000000174/TGM7.7_2185_160000_0.010013_0.68205_0.01785.png
                gene_name: TGM7
               theta_stop: 0.097 
                    nperm: 160000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0095 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 25 percent done.
THNSL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.361561e-02	ci left: 7.249193e-01	ci right 7.423444e-01	k: 7337	n:10000
Cons ci ratio: 4.786111e-02	ci left: 3.917725e-01	ci right 4.110850e-01	k: 4014	n:10000
KS ci ratio: 1.816794e-02	ci left: 8.155790e-01	ci right 8.306323e-01	k: 8232	n:10000
THNSL1   10000 perm   2 sec   (5441 perm/sec)   p_kst 8.232000e-01   p_cons 4.014000e-01   p_joint 7.337000e-01

Outputting figure to mutsig2_images.part000000000174/THNSL1.7_2236_10000_0.8232_0.4014_0.7337.png
                gene_name: THNSL1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 27 percent done.
TFG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.430777e-02	ci left: 5.564183e-01	ci right 5.759431e-01	k: 5662	n:10000
Cons ci ratio: 2.542912e-02	ci left: 6.947428e-01	ci right 7.127384e-01	k: 7038	n:10000
KS ci ratio: 4.495916e-02	ci left: 4.220628e-01	ci right 4.415769e-01	k: 4318	n:10000
TFG   10000 perm   2 sec   (5167 perm/sec)   p_kst 4.318000e-01   p_cons 7.038000e-01   p_joint 5.662000e-01

Outputting figure to mutsig2_images.part000000000174/TFG.6_1231_10000_0.4318_0.7038_0.5662.png
                gene_name: TFG
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 28 percent done.
TGM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.430514e-02	ci left: 7.134081e-01	ci right 7.310622e-01	k: 7223	n:10000
Cons ci ratio: 5.444600e-02	ci left: 3.320042e-01	ci right 3.506883e-01	k: 3413	n:10000
KS ci ratio: 3.375935e-02	ci left: 5.643380e-01	ci right 5.838188e-01	k: 5741	n:10000
TGM2   10000 perm   2 sec   (4964 perm/sec)   p_kst 5.741000e-01   p_cons 3.413000e-01   p_joint 7.223000e-01

Outputting figure to mutsig2_images.part000000000174/TGM2.6_2148_10000_0.5741_0.3413_0.7223.png
                gene_name: TGM2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 30 percent done.
THADA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.835874e-01	ci left: 3.958555e-02	ci right 4.768301e-02	k: 435	n:10000
Cons ci ratio: 5.252887e-02	ci left: 3.481986e-01	ci right 3.670844e-01	k: 3576	n:10000
KS ci ratio: 3.634162e-01	ci left: 9.412543e-03	ci right 1.367914e-02	k: 114	n:10000
THADA   10000 perm   2 sec   (4009 perm/sec)   p_kst 1.140000e-02   p_cons 3.576000e-01   p_joint 4.350000e-02

Joint ci ratio: 1.779009e-01	ci left: 2.158850e-02	ci right 2.585152e-02	k: 473	n:20000
Cons ci ratio: 3.685021e-02	ci left: 3.546380e-01	ci right 3.680023e-01	k: 7226	n:20000
KS ci ratio: 2.453702e-01	ci left: 1.105337e-02	ci right 1.419071e-02	k: 251	n:20000
THADA   20000 perm   5 sec   (3685 perm/sec)   p_kst 1.255000e-02   p_cons 3.613000e-01   p_joint 2.365000e-02

Joint ci ratio: 1.411425e-01	ci left: 2.329494e-02	ci right 2.686451e-02	k: 751	n:30000
Cons ci ratio: 3.006523e-02	ci left: 3.562265e-01	ci right 3.671336e-01	k: 10850	n:30000
KS ci ratio: 1.974559e-01	ci left: 1.168546e-02	ci right 1.427680e-02	k: 388	n:30000
THADA   30000 perm   8 sec   (3542 perm/sec)   p_kst 1.293333e-02   p_cons 3.616667e-01   p_joint 2.503333e-02

Joint ci ratio: 1.268976e-01	ci left: 2.181961e-02	ci right 2.480015e-02	k: 931	n:40000
Cons ci ratio: 2.599500e-02	ci left: 3.577118e-01	ci right 3.671581e-01	k: 14497	n:40000
KS ci ratio: 1.722973e-01	ci left: 1.167350e-02	ci right 1.389806e-02	k: 510	n:40000
THADA   40000 perm   12 sec   (3453 perm/sec)   p_kst 1.275000e-02   p_cons 3.624250e-01   p_joint 2.327500e-02

Joint ci ratio: 8.849582e-02	ci left: 3.608652e-02	ci right 3.944742e-02	k: 1887	n:50000
Cons ci ratio: 2.375975e-02	ci left: 3.482911e-01	ci right 3.566860e-01	k: 17624	n:50000
KS ci ratio: 1.533496e-01	ci left: 1.191002e-02	ci right 1.390713e-02	k: 644	n:50000
THADA   50000 perm   15 sec   (3385 perm/sec)   p_kst 1.288000e-02   p_cons 3.524800e-01   p_joint 3.774000e-02

Joint ci ratio: 9.060961e-02	ci left: 2.887767e-02	ci right 3.163468e-02	k: 1814	n:60000
Cons ci ratio: 2.166031e-02	ci left: 3.492747e-01	ci right 3.569396e-01	k: 21186	n:60000
KS ci ratio: 1.402642e-01	ci left: 1.194801e-02	ci right 1.376623e-02	k: 770	n:60000
THADA   60000 perm   18 sec   (3319 perm/sec)   p_kst 1.283333e-02   p_cons 3.531000e-01   p_joint 3.023333e-02

Joint ci ratio: 1.065430e-01	ci left: 1.795973e-02	ci right 1.999471e-02	k: 1327	n:70000
Cons ci ratio: 1.968899e-02	ci left: 3.579681e-01	ci right 3.651005e-01	k: 25307	n:70000
KS ci ratio: 1.296772e-01	ci left: 1.204950e-02	ci right 1.373409e-02	k: 901	n:70000
THADA   70000 perm   21 sec   (3267 perm/sec)   p_kst 1.287143e-02   p_cons 3.615286e-01   p_joint 1.895714e-02

Joint ci ratio: 8.745187e-02	ci left: 2.342751e-02	ci right 2.558216e-02	k: 1959	n:80000
Cons ci ratio: 1.842705e-02	ci left: 3.579576e-01	ci right 3.646275e-01	k: 28903	n:80000
KS ci ratio: 1.208195e-01	ci left: 1.220226e-02	ci right 1.378335e-02	k: 1038	n:80000
THADA   80000 perm   25 sec   (3208 perm/sec)   p_kst 1.297500e-02   p_cons 3.612875e-01   p_joint 2.448750e-02

Joint ci ratio: 7.884096e-02	ci left: 2.567833e-02	ci right 2.779677e-02	k: 2405	n:90000
Cons ci ratio: 1.737486e-02	ci left: 3.581051e-01	ci right 3.643927e-01	k: 32512	n:90000
KS ci ratio: 1.139036e-01	ci left: 1.224853e-02	ci right 1.373866e-02	k: 1168	n:90000
THADA   90000 perm   29 sec   (3152 perm/sec)   p_kst 1.297778e-02   p_cons 3.612444e-01   p_joint 2.672222e-02

Joint ci ratio: 7.646200e-02	ci left: 2.462988e-02	ci right 2.659776e-02	k: 2560	n:100000
Cons ci ratio: 1.646061e-02	ci left: 3.589007e-01	ci right 3.648674e-01	k: 36188	n:100000
KS ci ratio: 1.083075e-01	ci left: 1.222922e-02	ci right 1.363924e-02	k: 1292	n:100000
THADA   100000 perm   32 sec   (3099 perm/sec)   p_kst 1.292000e-02   p_cons 3.618800e-01   p_joint 2.560000e-02

Joint ci ratio: 7.303817e-02	ci left: 2.458535e-02	ci right 2.645797e-02	k: 2806	n:110000
Cons ci ratio: 1.572114e-02	ci left: 3.582607e-01	ci right 3.639466e-01	k: 39721	n:110000
KS ci ratio: 1.030217e-01	ci left: 1.232120e-02	ci right 1.366829e-02	k: 1428	n:110000
THADA   110000 perm   36 sec   (3054 perm/sec)   p_kst 1.298182e-02   p_cons 3.611000e-01   p_joint 2.550909e-02

Joint ci ratio: 7.004834e-02	ci left: 2.454169e-02	ci right 2.633134e-02	k: 3051	n:120000
Cons ci ratio: 1.505758e-02	ci left: 3.582069e-01	ci right 3.636498e-01	k: 43311	n:120000
KS ci ratio: 9.879350e-02	ci left: 1.230982e-02	ci right 1.359722e-02	k: 1553	n:120000
THADA   120000 perm   40 sec   (3013 perm/sec)   p_kst 1.294167e-02   p_cons 3.609250e-01   p_joint 2.542500e-02

Outputting figure to mutsig2_images.part000000000174/THADA.6_6010_120000_0.012942_0.36092_0.025425.png
                gene_name: THADA
               theta_stop: 0.099 
                    nperm: 120000 
                     p_ks: 0.013 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.025 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.026 

Current progress: 32 percent done.
TFCP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.796173e-02	ci left: 8.189333e-01	ci right 8.338761e-01	k: 8265	n:10000
KS ci ratio: 1.969253e-02	ci left: 7.905018e-01	ci right 8.063240e-01	k: 7985	n:10000
TFCP2   10000 perm   2 sec   (5030 perm/sec)   p_kst 7.985000e-01   p_cons 8.265000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TFCP2.5_1569_10000_0.7985_0.8265_1.png
                gene_name: TFCP2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
TGS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.425176e-02	ci left: 4.298407e-01	ci right 4.493945e-01	k: 4396	n:10000
Cons ci ratio: 2.888270e-02	ci left: 6.386479e-01	ci right 6.574658e-01	k: 6481	n:10000
KS ci ratio: 6.248709e-02	ci left: 2.734923e-01	ci right 2.912347e-01	k: 2823	n:10000
TGS1   10000 perm   2 sec   (4887 perm/sec)   p_kst 2.823000e-01   p_cons 6.481000e-01   p_joint 4.396000e-01

Outputting figure to mutsig2_images.part000000000174/TGS1.5_2614_10000_0.2823_0.6481_0.4396.png
                gene_name: TGS1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 35 percent done.
THOC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.402797e-02	ci left: 4.323342e-01	ci right 4.518996e-01	k: 4421	n:10000
Cons ci ratio: 3.755631e-03	ci left: 9.889489e-01	ci right 9.927569e-01	k: 9910	n:10000
KS ci ratio: 7.182444e-02	ci left: 2.211891e-01	ci right 2.377688e-01	k: 2294	n:10000
THOC1   10000 perm   2 sec   (4842 perm/sec)   p_kst 2.294000e-01   p_cons 9.910000e-01   p_joint 4.421000e-01

Outputting figure to mutsig2_images.part000000000174/THOC1.5_2058_10000_0.2294_0.991_0.4421.png
                gene_name: THOC1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 37 percent done.
THRAP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.182535e-01	ci left: 9.311639e-02	ci right 1.049184e-01	k: 989	n:10000
Cons ci ratio: 9.276662e-02	ci left: 1.444270e-01	ci right 1.585767e-01	k: 1514	n:10000
KS ci ratio: 2.011077e-01	ci left: 3.291000e-02	ci right 4.036307e-02	k: 365	n:10000
THRAP3   10000 perm   2 sec   (4715 perm/sec)   p_kst 3.650000e-02   p_cons 1.514000e-01   p_joint 9.890000e-02

Joint ci ratio: 9.610131e-02	ci left: 7.309752e-02	ci right 8.052607e-02	k: 1535	n:20000
Cons ci ratio: 6.487930e-02	ci left: 1.493191e-01	ci right 1.593816e-01	k: 3086	n:20000
KS ci ratio: 1.414078e-01	ci left: 3.437815e-02	ci right 3.965756e-02	k: 739	n:20000
THRAP3   20000 perm   5 sec   (4342 perm/sec)   p_kst 3.695000e-02   p_cons 1.543000e-01   p_joint 7.675000e-02

Joint ci ratio: 1.001342e-01	ci left: 4.616135e-02	ci right 5.105987e-02	k: 1457	n:30000
Cons ci ratio: 5.330451e-02	ci left: 1.486468e-01	ci right 1.568206e-01	k: 4581	n:30000
KS ci ratio: 1.138714e-01	ci left: 3.583221e-02	ci right 4.019118e-02	k: 1139	n:30000
THRAP3   30000 perm   7 sec   (4100 perm/sec)   p_kst 3.796667e-02   p_cons 1.527000e-01   p_joint 4.856667e-02

Joint ci ratio: 5.884848e-02	ci left: 9.690396e-02	ci right 1.028043e-01	k: 3993	n:40000
Cons ci ratio: 4.609345e-02	ci left: 1.495840e-01	ci right 1.566664e-01	k: 6124	n:40000
KS ci ratio: 9.713089e-02	ci left: 3.722150e-02	ci right 4.104578e-02	k: 1564	n:40000
THRAP3   40000 perm   10 sec   (3988 perm/sec)   p_kst 3.910000e-02   p_cons 1.531000e-01   p_joint 9.982500e-02

Outputting figure to mutsig2_images.part000000000174/THRAP3.5_2908_40000_0.0391_0.1531_0.099825.png
                gene_name: THRAP3
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.100 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.10 

Current progress: 38 percent done.
THSD7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.064282e-02	ci left: 2.856761e-01	ci right 3.036436e-01	k: 2946	n:10000
Cons ci ratio: 4.425176e-02	ci left: 4.298407e-01	ci right 4.493945e-01	k: 4396	n:10000
KS ci ratio: 8.735789e-02	ci left: 1.602287e-01	ci right 1.749655e-01	k: 1675	n:10000
THSD7A   10000 perm   3 sec   (3788 perm/sec)   p_kst 1.675000e-01   p_cons 4.396000e-01   p_joint 2.946000e-01

Outputting figure to mutsig2_images.part000000000174/THSD7A.5_5082_10000_0.1675_0.4396_0.2946.png
                gene_name: THSD7A
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 40 percent done.
TFDP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.396687e-02	ci left: 5.613302e-01	ci right 5.808283e-01	k: 5711	n:10000
Cons ci ratio: 2.970424e-02	ci left: 6.256770e-01	ci right 6.446442e-01	k: 6352	n:10000
KS ci ratio: 4.443180e-02	ci left: 4.278462e-01	ci right 4.473902e-01	k: 4376	n:10000
TFDP1   10000 perm   2 sec   (6241 perm/sec)   p_kst 4.376000e-01   p_cons 6.352000e-01   p_joint 5.711000e-01

Outputting figure to mutsig2_images.part000000000174/TFDP1.4_1277_10000_0.4376_0.6352_0.5711.png
                gene_name: TFDP1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 42 percent done.
TFIP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.126828e-02	ci left: 6.014639e-01	ci right 6.206713e-01	k: 6111	n:10000
KS ci ratio: 3.155181e-02	ci left: 5.971464e-01	ci right 6.163914e-01	k: 6068	n:10000
TFIP11   10000 perm   2 sec   (5109 perm/sec)   p_kst 6.068000e-01   p_cons 6.111000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TFIP11.4_2562_10000_0.6068_0.6111_1.png
                gene_name: TFIP11
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
TFPI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.956843e-02	ci left: 1.874712e-01	ci right 2.031067e-01	k: 1952	n:10000
Cons ci ratio: 6.958397e-02	ci left: 2.324462e-01	ci right 2.493050e-01	k: 2408	n:10000
KS ci ratio: 1.550139e-01	ci left: 5.542402e-02	ci right 6.483425e-02	k: 600	n:10000
TFPI2   10000 perm   2 sec   (5916 perm/sec)   p_kst 6.000000e-02   p_cons 2.408000e-01   p_joint 1.952000e-01

Joint ci ratio: 7.945270e-02	ci left: 1.041727e-01	ci right 1.128415e-01	k: 2169	n:20000
Cons ci ratio: 4.824761e-02	ci left: 2.421261e-01	ci right 2.541472e-01	k: 4962	n:20000
KS ci ratio: 1.077657e-01	ci left: 5.869667e-02	ci right 6.543134e-02	k: 1240	n:20000
TFPI2   20000 perm   4 sec   (5163 perm/sec)   p_kst 6.200000e-02   p_cons 2.481000e-01   p_joint 1.084500e-01

Joint ci ratio: 7.934696e-02	ci left: 7.224042e-02	ci right 7.824214e-02	k: 2256	n:30000
Cons ci ratio: 3.956554e-02	ci left: 2.416312e-01	ci right 2.514179e-01	k: 7395	n:30000
KS ci ratio: 8.856300e-02	ci left: 5.857883e-02	ci right 6.403984e-02	k: 1838	n:30000
TFPI2   30000 perm   6 sec   (4979 perm/sec)   p_kst 6.126667e-02   p_cons 2.465000e-01   p_joint 7.520000e-02

Outputting figure to mutsig2_images.part000000000174/TFPI2.4_728_30000_0.061267_0.2465_0.0752.png
                gene_name: TFPI2
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.078 

Current progress: 45 percent done.
TGFBRAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.997964e-02	ci left: 7.857354e-01	ci right 8.016931e-01	k: 7938	n:10000
KS ci ratio: 1.540245e-02	ci left: 8.594729e-01	ci right 8.729130e-01	k: 8663	n:10000
TGFBRAP1   10000 perm   2 sec   (5241 perm/sec)   p_kst 8.663000e-01   p_cons 7.938000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TGFBRAP1.4_2627_10000_0.8663_0.7938_1.png
                gene_name: TGFBRAP1
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
TGIF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.738372e-02	ci left: 1.962376e-01	ci right 2.121351e-01	k: 2041	n:10000
Cons ci ratio: 3.473567e-02	ci left: 5.503049e-01	ci right 5.698601e-01	k: 5601	n:10000
KS ci ratio: 1.068087e-01	ci left: 1.123248e-01	ci right 1.250982e-01	k: 1186	n:10000
TGIF1   10000 perm   2 sec   (5307 perm/sec)   p_kst 1.186000e-01   p_cons 5.601000e-01   p_joint 2.041000e-01

Joint ci ratio: 4.131018e-02	ci left: 3.039909e-01	ci right 3.168642e-01	k: 6208	n:20000
Cons ci ratio: 2.480853e-02	ci left: 5.482802e-01	ci right 5.621037e-01	k: 11104	n:20000
KS ci ratio: 7.467253e-02	ci left: 1.165597e-01	ci right 1.256508e-01	k: 2421	n:20000
TGIF1   20000 perm   4 sec   (4913 perm/sec)   p_kst 1.210500e-01   p_cons 5.552000e-01   p_joint 3.104000e-01

Outputting figure to mutsig2_images.part000000000174/TGIF1.4_1300_20000_0.12105_0.5552_0.3104.png
                gene_name: TGIF1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 48 percent done.
TGM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.619910e-02	ci left: 4.088062e-01	ci right 4.282413e-01	k: 4185	n:10000
KS ci ratio: 3.062084e-02	ci left: 6.114073e-01	ci right 6.305221e-01	k: 6210	n:10000
TGM1   10000 perm   2 sec   (5009 perm/sec)   p_kst 6.210000e-01   p_cons 4.185000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TGM1.4_2510_10000_0.621_0.4185_1.png
                gene_name: TGM1
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
THEG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.027488e-02	ci left: 4.765590e-01	ci right 4.962490e-01	k: 4864	n:10000
Cons ci ratio: 5.603282e-02	ci left: 3.192957e-01	ci right 3.378043e-01	k: 3285	n:10000
KS ci ratio: 3.432872e-02	ci left: 5.561176e-01	ci right 5.756439e-01	k: 5659	n:10000
THEG   10000 perm   2 sec   (6127 perm/sec)   p_kst 5.659000e-01   p_cons 3.285000e-01   p_joint 4.864000e-01

Outputting figure to mutsig2_images.part000000000174/THEG.4_1172_10000_0.5659_0.3285_0.4864.png
                gene_name: THEG
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 52 percent done.
THOC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.682742e-02	ci left: 6.717631e-01	ci right 6.901314e-01	k: 6810	n:10000
Cons ci ratio: 6.538379e-02	ci left: 2.556770e-01	ci right 2.730605e-01	k: 2643	n:10000
KS ci ratio: 1.077657e-02	ci left: 9.246163e-01	ci right 9.347317e-01	k: 9298	n:10000
THOC5   10000 perm   2 sec   (5243 perm/sec)   p_kst 9.298000e-01   p_cons 2.643000e-01   p_joint 6.810000e-01

Outputting figure to mutsig2_images.part000000000174/THOC5.4_2128_10000_0.9298_0.2643_0.681.png
                gene_name: THOC5
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 53 percent done.
THRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.515566e-02	ci left: 8.632507e-01	ci right 8.765330e-01	k: 8700	n:10000
Cons ci ratio: 4.772199e-02	ci left: 3.931666e-01	ci right 4.124900e-01	k: 4028	n:10000
KS ci ratio: 5.905110e-03	ci left: 9.748256e-01	ci right 9.806915e-01	k: 9779	n:10000
THRB   10000 perm   2 sec   (5837 perm/sec)   p_kst 9.779000e-01   p_cons 4.028000e-01   p_joint 8.700000e-01

Outputting figure to mutsig2_images.part000000000174/THRB.4_1418_10000_0.9779_0.4028_0.87.png
                gene_name: THRB
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 55 percent done.
THUMPD3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.404485e-02	ci left: 7.177492e-01	ci right 7.353186e-01	k: 7266	n:10000
Cons ci ratio: 2.272225e-02	ci left: 7.398746e-01	ci right 7.569805e-01	k: 7485	n:10000
KS ci ratio: 4.553173e-02	ci left: 4.158821e-01	ci right 4.353612e-01	k: 4256	n:10000
THUMPD3   10000 perm   2 sec   (5843 perm/sec)   p_kst 4.256000e-01   p_cons 7.485000e-01   p_joint 7.266000e-01

Outputting figure to mutsig2_images.part000000000174/THUMPD3.4_1560_10000_0.4256_0.7485_0.7266.png
                gene_name: THUMPD3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 57 percent done.
TFE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.468541e-02	ci left: 4.250540e-01	ci right 4.445840e-01	k: 4348	n:10000
Cons ci ratio: 1.238134e-01	ci left: 8.543267e-02	ci right 9.680682e-02	k: 910	n:10000
KS ci ratio: 2.655002e-02	ci left: 6.762965e-01	ci right 6.945953e-01	k: 6855	n:10000
TFE3   10000 perm   2 sec   (5645 perm/sec)   p_kst 6.855000e-01   p_cons 9.100000e-02   p_joint 4.348000e-01

Joint ci ratio: 3.285596e-02	ci left: 4.089072e-01	ci right 4.226173e-01	k: 8315	n:20000
Cons ci ratio: 9.111760e-02	ci left: 8.082777e-02	ci right 8.859346e-02	k: 1693	n:20000
KS ci ratio: 1.893993e-02	ci left: 6.751932e-01	ci right 6.881540e-01	k: 13634	n:20000
TFE3   20000 perm   4 sec   (5016 perm/sec)   p_kst 6.817000e-01   p_cons 8.465000e-02   p_joint 4.157500e-01

Outputting figure to mutsig2_images.part000000000174/TFE3.3_1768_20000_0.6817_0.08465_0.41575.png
                gene_name: TFE3
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 58 percent done.
TFEB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.662210e-02	ci left: 3.147305e-01	ci right 3.331722e-01	k: 3239	n:10000
Cons ci ratio: 6.788960e-04	ci left: 9.992777e-01	ci right 9.999758e-01	k: 9998	n:10000
KS ci ratio: 8.898945e-02	ci left: 1.552204e-01	ci right 1.697768e-01	k: 1624	n:10000
TFEB   10000 perm   2 sec   (6071 perm/sec)   p_kst 1.624000e-01   p_cons 9.998000e-01   p_joint 3.239000e-01

Outputting figure to mutsig2_images.part000000000174/TFEB.3_1463_10000_0.1624_0.9998_0.3239.png
                gene_name: TFEB
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 60 percent done.
TFEC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.800946e-02	ci left: 1.311004e-01	ci right 1.447113e-01	k: 1378	n:10000
Cons ci ratio: 1.004742e-01	ci left: 1.254236e-01	ci right 1.387915e-01	k: 1320	n:10000
KS ci ratio: 1.130045e-01	ci left: 1.012990e-01	ci right 1.135307e-01	k: 1073	n:10000
TFEC   10000 perm   2 sec   (6115 perm/sec)   p_kst 1.073000e-01   p_cons 1.320000e-01   p_joint 1.378000e-01

Joint ci ratio: 6.767631e-02	ci left: 1.387669e-01	ci right 1.485369e-01	k: 2872	n:20000
Cons ci ratio: 7.096984e-02	ci left: 1.276330e-01	ci right 1.370741e-01	k: 2646	n:20000
KS ci ratio: 7.955555e-02	ci left: 1.039271e-01	ci right 1.125872e-01	k: 2164	n:20000
TFEC   20000 perm   4 sec   (5291 perm/sec)   p_kst 1.082000e-01   p_cons 1.323000e-01   p_joint 1.436000e-01

Outputting figure to mutsig2_images.part000000000174/TFEC.3_1072_20000_0.1082_0.1323_0.1436.png
                gene_name: TFEC
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 62 percent done.
TFPI
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.124198e-02	ci left: 6.018656e-01	ci right 6.210694e-01	k: 6115	n:10000
Cons ci ratio: 3.903769e-02	ci left: 4.921509e-01	ci right 5.118480e-01	k: 5020	n:10000
KS ci ratio: 4.705415e-02	ci left: 3.999392e-01	ci right 4.193135e-01	k: 4096	n:10000
TFPI   10000 perm   2 sec   (6154 perm/sec)   p_kst 4.096000e-01   p_cons 5.020000e-01   p_joint 6.115000e-01

Outputting figure to mutsig2_images.part000000000174/TFPI.3_1075_10000_0.4096_0.502_0.6115.png
                gene_name: TFPI
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 63 percent done.
TFR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.869758e-01	ci left: 3.815245e-02	ci right 4.611708e-02	k: 420	n:10000
Cons ci ratio: 1.487901e-01	ci left: 6.005239e-02	ci right 6.980294e-02	k: 648	n:10000
KS ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
TFR2   10000 perm   2 sec   (5389 perm/sec)   p_kst 1.240000e-02   p_cons 6.480000e-02   p_joint 4.200000e-02

Joint ci ratio: 1.925569e-01	ci left: 1.834288e-02	ci right 2.229831e-02	k: 405	n:20000
Cons ci ratio: 1.100528e-01	ci left: 5.635816e-02	ci right 6.297058e-02	k: 1192	n:20000
KS ci ratio: 2.488949e-01	ci left: 1.072482e-02	ci right 1.381940e-02	k: 244	n:20000
TFR2   20000 perm   4 sec   (4801 perm/sec)   p_kst 1.220000e-02   p_cons 5.960000e-02   p_joint 2.025000e-02

Joint ci ratio: 1.639452e-01	ci left: 1.716520e-02	ci right 2.026233e-02	k: 560	n:30000
Cons ci ratio: 8.971188e-02	ci left: 5.714289e-02	ci right 6.254274e-02	k: 1794	n:30000
KS ci ratio: 2.065198e-01	ci left: 1.064047e-02	ci right 1.312207e-02	k: 355	n:30000
TFR2   30000 perm   7 sec   (4580 perm/sec)   p_kst 1.183333e-02   p_cons 5.980000e-02   p_joint 1.866667e-02

Joint ci ratio: 1.606022e-01	ci left: 1.349541e-02	ci right 1.587581e-02	k: 586	n:40000
Cons ci ratio: 7.870061e-02	ci left: 5.609704e-02	ci right 6.071733e-02	k: 2335	n:40000
KS ci ratio: 1.784089e-01	ci left: 1.086039e-02	ci right 1.301133e-02	k: 476	n:40000
TFR2   40000 perm   9 sec   (4433 perm/sec)   p_kst 1.190000e-02   p_cons 5.837500e-02   p_joint 1.465000e-02

Joint ci ratio: 1.897871e-01	ci left: 7.656790e-03	ci right 9.281053e-03	k: 422	n:50000
Cons ci ratio: 7.003620e-02	ci left: 5.689133e-02	ci right 6.104006e-02	k: 2947	n:50000
KS ci ratio: 1.601528e-01	ci left: 1.089112e-02	ci right 1.280618e-02	k: 591	n:50000
TFR2   50000 perm   12 sec   (4313 perm/sec)   p_kst 1.182000e-02   p_cons 5.894000e-02   p_joint 8.440000e-03

Joint ci ratio: 1.179801e-01	ci left: 1.699977e-02	ci right 1.914721e-02	k: 1083	n:60000
Cons ci ratio: 5.854869e-02	ci left: 6.747772e-02	ci right 7.156404e-02	k: 4170	n:60000
KS ci ratio: 1.455166e-01	ci left: 1.107982e-02	ci right 1.283453e-02	k: 716	n:60000
TFR2   60000 perm   14 sec   (4208 perm/sec)   p_kst 1.193333e-02   p_cons 6.950000e-02   p_joint 1.805000e-02

Joint ci ratio: 1.072865e-01	ci left: 1.770934e-02	ci right 1.973084e-02	k: 1309	n:70000
Cons ci ratio: 5.417072e-02	ci left: 6.771150e-02	ci right 7.149570e-02	k: 4871	n:70000
KS ci ratio: 1.346816e-01	ci left: 1.115127e-02	ci right 1.277527e-02	k: 836	n:70000
TFR2   70000 perm   17 sec   (4124 perm/sec)   p_kst 1.194286e-02   p_cons 6.958571e-02   p_joint 1.870000e-02

Joint ci ratio: 1.424647e-01	ci left: 8.706735e-03	ci right 1.005420e-02	k: 749	n:80000
Cons ci ratio: 5.301791e-02	ci left: 6.226418e-02	ci right 6.566752e-02	k: 5116	n:80000
KS ci ratio: 1.256891e-01	ci left: 1.125696e-02	ci right 1.277873e-02	k: 960	n:80000
TFR2   80000 perm   20 sec   (4056 perm/sec)   p_kst 1.200000e-02   p_cons 6.395000e-02   p_joint 9.362500e-03

Joint ci ratio: 1.079326e-01	ci left: 1.366425e-02	ci right 1.523394e-02	k: 1299	n:90000
Cons ci ratio: 5.000726e-02	ci left: 6.231066e-02	ci right 6.551752e-02	k: 5751	n:90000
KS ci ratio: 1.183970e-01	ci left: 1.132041e-02	ci right 1.275575e-02	k: 1082	n:90000
TFR2   90000 perm   23 sec   (3986 perm/sec)   p_kst 1.202222e-02   p_cons 6.390000e-02   p_joint 1.443333e-02

Joint ci ratio: 9.021625e-02	ci left: 1.769337e-02	ci right 1.937473e-02	k: 1852	n:100000
Cons ci ratio: 4.968017e-02	ci left: 5.715208e-02	ci right 6.007359e-02	k: 5860	n:100000
KS ci ratio: 1.123843e-01	ci left: 1.134404e-02	ci right 1.270448e-02	k: 1201	n:100000
TFR2   100000 perm   26 sec   (3904 perm/sec)   p_kst 1.201000e-02   p_cons 5.860000e-02   p_joint 1.852000e-02

Joint ci ratio: 8.325719e-02	ci left: 1.893143e-02	ci right 2.058493e-02	k: 2172	n:110000
Cons ci ratio: 4.545900e-02	ci left: 6.187700e-02	ci right 6.476426e-02	k: 6964	n:110000
KS ci ratio: 1.065523e-01	ci left: 1.150650e-02	ci right 1.281032e-02	k: 1336	n:110000
TFR2   110000 perm   29 sec   (3840 perm/sec)   p_kst 1.214545e-02   p_cons 6.330909e-02   p_joint 1.974545e-02

Joint ci ratio: 8.514071e-02	ci left: 1.661875e-02	ci right 1.810471e-02	k: 2082	n:120000
Cons ci ratio: 4.356405e-02	ci left: 6.182970e-02	ci right 6.459145e-02	k: 7584	n:120000
KS ci ratio: 1.023557e-01	ci left: 1.145656e-02	ci right 1.270052e-02	k: 1448	n:120000
TFR2   120000 perm   32 sec   (3774 perm/sec)   p_kst 1.206667e-02   p_cons 6.320000e-02   p_joint 1.735000e-02

Joint ci ratio: 8.435873e-02	ci left: 1.564875e-02	ci right 1.703448e-02	k: 2123	n:130000
Cons ci ratio: 4.189878e-02	ci left: 6.176134e-02	ci right 6.441203e-02	k: 8200	n:130000
KS ci ratio: 9.820574e-02	ci left: 1.151273e-02	ci right 1.270918e-02	k: 1573	n:130000
TFR2   130000 perm   35 sec   (3717 perm/sec)   p_kst 1.210000e-02   p_cons 6.307692e-02   p_joint 1.633077e-02

Outputting figure to mutsig2_images.part000000000174/TFR2.3_2478_130000_0.0121_0.063077_0.016331.png
                gene_name: TFR2
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.012 
       ci_ks_bounds_right: 0.013 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.062 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.016 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 65 percent done.
TFRC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.181702e-02	ci left: 7.550454e-01	ci right 7.718009e-01	k: 7635	n:10000
Cons ci ratio: 4.475820e-02	ci left: 4.242563e-01	ci right 4.437821e-01	k: 4340	n:10000
KS ci ratio: 3.334015e-02	ci left: 5.704549e-01	ci right 5.898984e-01	k: 5802	n:10000
TFRC   10000 perm   2 sec   (5628 perm/sec)   p_kst 5.802000e-01   p_cons 4.340000e-01   p_joint 7.635000e-01

Outputting figure to mutsig2_images.part000000000174/TFRC.3_2355_10000_0.5802_0.434_0.7635.png
                gene_name: TFRC
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 67 percent done.
TGIF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.690770e-02	ci left: 6.704536e-01	ci right 6.888416e-01	k: 6797	n:10000
Cons ci ratio: 5.511858e-02	ci left: 3.265426e-01	ci right 3.451531e-01	k: 3358	n:10000
KS ci ratio: 5.290849e-03	ci left: 9.794135e-01	ci right 9.847004e-01	k: 9822	n:10000
TGIF2   10000 perm   1 sec   (6697 perm/sec)   p_kst 9.822000e-01   p_cons 3.358000e-01   p_joint 6.797000e-01

Outputting figure to mutsig2_images.part000000000174/TGIF2.3_722_10000_0.9822_0.3358_0.6797.png
                gene_name: TGIF2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 68 percent done.
THAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.492043e-02	ci left: 8.668259e-01	ci right 8.799557e-01	k: 8735	n:10000
Cons ci ratio: 3.011568e-02	ci left: 6.192445e-01	ci right 6.382804e-01	k: 6288	n:10000
KS ci ratio: 1.811802e-02	ci left: 8.163920e-01	ci right 8.314188e-01	k: 8240	n:10000
THAP2   10000 perm   2 sec   (6415 perm/sec)   p_kst 8.240000e-01   p_cons 6.288000e-01   p_joint 8.735000e-01

Outputting figure to mutsig2_images.part000000000174/THAP2.3_699_10000_0.824_0.6288_0.8735.png
                gene_name: THAP2
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 70 percent done.
THAP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.334730e-01	ci left: 7.407714e-02	ci right 8.476939e-02	k: 793	n:10000
Cons ci ratio: 3.858751e-02	ci left: 4.979503e-01	ci right 5.176452e-01	k: 5078	n:10000
KS ci ratio: 4.846095e-01	ci left: 4.932166e-03	ci right 8.165407e-03	k: 64	n:10000
THAP5   10000 perm   2 sec   (6033 perm/sec)   p_kst 6.400000e-03   p_cons 5.078000e-01   p_joint 7.930000e-02

Joint ci ratio: 1.300529e-01	ci left: 4.061770e-02	ci right 4.631599e-02	k: 868	n:20000
Cons ci ratio: 2.634794e-02	ci left: 5.183511e-01	ci right 5.322415e-01	k: 10506	n:20000
KS ci ratio: 3.177907e-01	ci left: 6.351314e-03	ci right 8.795126e-03	k: 150	n:20000
THAP5   20000 perm   4 sec   (5493 perm/sec)   p_kst 7.500000e-03   p_cons 5.253000e-01   p_joint 4.340000e-02

Joint ci ratio: 1.305713e-01	ci left: 2.725927e-02	ci right 3.109930e-02	k: 874	n:30000
Cons ci ratio: 2.155668e-02	ci left: 5.186300e-01	ci right 5.299653e-01	k: 15729	n:30000
KS ci ratio: 2.708548e-01	ci left: 5.994619e-03	ci right 7.902745e-03	k: 207	n:30000
THAP5   30000 perm   6 sec   (5237 perm/sec)   p_kst 6.900000e-03   p_cons 5.243000e-01   p_joint 2.913333e-02

Joint ci ratio: 1.656890e-01	ci left: 1.265568e-02	ci right 1.496570e-02	k: 551	n:40000
Cons ci ratio: 1.856246e-02	ci left: 5.222430e-01	ci right 5.320531e-01	k: 21086	n:40000
KS ci ratio: 2.381987e-01	ci left: 5.924020e-03	ci right 7.548834e-03	k: 268	n:40000
THAP5   40000 perm   8 sec   (5057 perm/sec)   p_kst 6.700000e-03   p_cons 5.271500e-01   p_joint 1.377500e-02

Joint ci ratio: 1.537121e-01	ci left: 1.185230e-02	ci right 1.384486e-02	k: 641	n:50000
Cons ci ratio: 1.657194e-02	ci left: 5.236928e-01	ci right 5.324640e-01	k: 26404	n:50000
KS ci ratio: 2.106219e-01	ci left: 6.155261e-03	ci right 7.622868e-03	k: 343	n:50000
THAP5   50000 perm   10 sec   (4908 perm/sec)   p_kst 6.860000e-03   p_cons 5.280800e-01   p_joint 1.282000e-02

Joint ci ratio: 1.187636e-01	ci left: 1.677323e-02	ci right 1.890711e-02	k: 1069	n:60000
Cons ci ratio: 1.514269e-02	ci left: 5.235958e-01	ci right 5.316016e-01	k: 31656	n:60000
KS ci ratio: 1.968356e-01	ci left: 5.920171e-03	ci right 7.228244e-03	k: 393	n:60000
THAP5   60000 perm   13 sec   (4786 perm/sec)   p_kst 6.550000e-03   p_cons 5.276000e-01   p_joint 1.781667e-02

Joint ci ratio: 1.124722e-01	ci left: 1.609695e-02	ci right 1.802909e-02	k: 1193	n:70000
Cons ci ratio: 1.399255e-02	ci left: 5.248509e-01	ci right 5.322610e-01	k: 36999	n:70000
KS ci ratio: 1.833758e-01	ci left: 5.890813e-03	ci right 7.093502e-03	k: 453	n:70000
THAP5   70000 perm   15 sec   (4671 perm/sec)   p_kst 6.471429e-03   p_cons 5.285571e-01   p_joint 1.704286e-02

Joint ci ratio: 9.863067e-02	ci left: 1.840666e-02	ci right 2.032842e-02	k: 1548	n:80000
Cons ci ratio: 1.310088e-02	ci left: 5.246335e-01	ci right 5.315645e-01	k: 42248	n:80000
KS ci ratio: 1.721779e-01	ci left: 5.883054e-03	ci right 7.003191e-03	k: 514	n:80000
THAP5   80000 perm   17 sec   (4575 perm/sec)   p_kst 6.425000e-03   p_cons 5.281000e-01   p_joint 1.935000e-02

Joint ci ratio: 1.045564e-01	ci left: 1.457313e-02	ci right 1.619165e-02	k: 1383	n:90000
Cons ci ratio: 1.236708e-02	ci left: 5.242097e-01	ci right 5.307441e-01	k: 47473	n:90000
KS ci ratio: 1.632373e-01	ci left: 5.846780e-03	ci right 6.896529e-03	k: 572	n:90000
THAP5   90000 perm   20 sec   (4477 perm/sec)   p_kst 6.355556e-03   p_cons 5.274778e-01   p_joint 1.536667e-02

Joint ci ratio: 9.334446e-02	ci left: 1.652043e-02	ci right 1.814774e-02	k: 1732	n:100000
Cons ci ratio: 1.174489e-02	ci left: 5.238498e-01	ci right 5.300487e-01	k: 52695	n:100000
KS ci ratio: 1.558075e-01	ci left: 5.799743e-03	ci right 6.789221e-03	k: 628	n:100000
THAP5   100000 perm   23 sec   (4386 perm/sec)   p_kst 6.280000e-03   p_cons 5.269500e-01   p_joint 1.732000e-02

Joint ci ratio: 8.315964e-02	ci left: 1.897596e-02	ci right 2.063131e-02	k: 2177	n:110000
Cons ci ratio: 1.121436e-02	ci left: 5.232805e-01	ci right 5.291909e-01	k: 57886	n:110000
KS ci ratio: 1.483304e-01	ci left: 5.840936e-03	ci right 6.785378e-03	k: 693	n:110000
THAP5   110000 perm   26 sec   (4299 perm/sec)   p_kst 6.300000e-03   p_cons 5.262364e-01   p_joint 1.979091e-02

Joint ci ratio: 7.268156e-02	ci left: 2.280579e-02	ci right 2.453400e-02	k: 2839	n:120000
Cons ci ratio: 1.075659e-02	ci left: 5.224949e-01	ci right 5.281539e-01	k: 63039	n:120000
KS ci ratio: 1.422133e-01	ci left: 5.844053e-03	ci right 6.746723e-03	k: 754	n:120000
THAP5   120000 perm   28 sec   (4218 perm/sec)   p_kst 6.283333e-03   p_cons 5.253250e-01   p_joint 2.365833e-02

Joint ci ratio: 7.445574e-02	ci left: 2.009903e-02	ci right 2.166090e-02	k: 2713	n:130000
Cons ci ratio: 1.033656e-02	ci left: 5.225119e-01	ci right 5.279485e-01	k: 68280	n:130000
KS ci ratio: 1.359597e-01	ci left: 5.921681e-03	ci right 6.792866e-03	k: 825	n:130000
THAP5   130000 perm   32 sec   (4123 perm/sec)   p_kst 6.346154e-03   p_cons 5.252308e-01   p_joint 2.086923e-02

Joint ci ratio: 7.023767e-02	ci left: 2.099929e-02	ci right 2.253490e-02	k: 3046	n:140000
Cons ci ratio: 1.027742e-02	ci left: 5.069705e-01	ci right 5.122148e-01	k: 71343	n:140000
KS ci ratio: 1.307583e-01	ci left: 5.961320e-03	ci right 6.802179e-03	k: 892	n:140000
THAP5   140000 perm   35 sec   (4047 perm/sec)   p_kst 6.371429e-03   p_cons 5.095929e-01   p_joint 2.175714e-02

Joint ci ratio: 7.104311e-02	ci left: 1.918611e-02	ci right 2.060587e-02	k: 2983	n:150000
Cons ci ratio: 9.939532e-03	ci left: 5.065266e-01	ci right 5.115930e-01	k: 76359	n:150000
KS ci ratio: 1.257823e-01	ci left: 6.028512e-03	ci right 6.844076e-03	k: 964	n:150000
THAP5   150000 perm   38 sec   (3970 perm/sec)   p_kst 6.426667e-03   p_cons 5.090600e-01   p_joint 1.988667e-02

Joint ci ratio: 6.466750e-02	ci left: 2.172350e-02	ci right 2.318137e-02	k: 3591	n:160000
Cons ci ratio: 9.622424e-03	ci left: 5.066847e-01	ci right 5.115900e-01	k: 81462	n:160000
KS ci ratio: 1.218677e-01	ci left: 6.033285e-03	ci right 6.822260e-03	k: 1027	n:160000
THAP5   160000 perm   41 sec   (3900 perm/sec)   p_kst 6.418750e-03   p_cons 5.091375e-01   p_joint 2.244375e-02

Joint ci ratio: 5.304053e-02	ci left: 3.030312e-02	ci right 3.195998e-02	k: 5291	n:170000
Cons ci ratio: 9.334510e-03	ci left: 5.067911e-01	ci right 5.115498e-01	k: 86559	n:170000
KS ci ratio: 1.177552e-01	ci left: 6.094942e-03	ci right 6.863211e-03	k: 1100	n:170000
THAP5   170000 perm   44 sec   (3834 perm/sec)   p_kst 6.470588e-03   p_cons 5.091706e-01   p_joint 3.112353e-02

Joint ci ratio: 5.655115e-02	ci left: 2.526423e-02	ci right 2.673998e-02	k: 4679	n:180000
Cons ci ratio: 9.064533e-03	ci left: 5.072432e-01	ci right 5.118676e-01	k: 91720	n:180000
KS ci ratio: 1.150734e-01	ci left: 6.036800e-03	ci right 6.779232e-03	k: 1152	n:180000
THAP5   180000 perm   48 sec   (3771 perm/sec)   p_kst 6.400000e-03   p_cons 5.095556e-01   p_joint 2.599444e-02

Joint ci ratio: 5.916235e-02	ci left: 2.191563e-02	ci right 2.325689e-02	k: 4290	n:190000
Cons ci ratio: 8.815766e-03	ci left: 5.077021e-01	ci right 5.122029e-01	k: 96891	n:190000
KS ci ratio: 1.116381e-01	ci left: 6.087286e-03	ci right 6.812107e-03	k: 1224	n:190000
THAP5   190000 perm   51 sec   (3710 perm/sec)   p_kst 6.442105e-03   p_cons 5.099526e-01   p_joint 2.257895e-02

Joint ci ratio: 4.764335e-02	ci left: 3.195943e-02	ci right 3.352416e-02	k: 6547	n:200000
Cons ci ratio: 8.595173e-03	ci left: 5.076065e-01	ci right 5.119932e-01	k: 101960	n:200000
KS ci ratio: 1.081996e-01	ci left: 6.167077e-03	ci right 6.877340e-03	k: 1303	n:200000
THAP5   200000 perm   55 sec   (3651 perm/sec)   p_kst 6.515000e-03   p_cons 5.098000e-01   p_joint 3.273500e-02

Joint ci ratio: 4.817374e-02	ci left: 2.982982e-02	ci right 3.130698e-02	k: 6418	n:210000
Cons ci ratio: 8.387953e-03	ci left: 5.076642e-01	ci right 5.119451e-01	k: 107059	n:210000
KS ci ratio: 1.058335e-01	ci left: 6.146835e-03	ci right 6.838322e-03	k: 1362	n:210000
THAP5   210000 perm   58 sec   (3593 perm/sec)   p_kst 6.485714e-03   p_cons 5.098048e-01   p_joint 3.056190e-02

Joint ci ratio: 4.796252e-02	ci left: 2.876095e-02	ci right 3.017876e-02	k: 6482	n:220000
Cons ci ratio: 8.187211e-03	ci left: 5.081951e-01	ci right 5.123774e-01	k: 112263	n:220000
KS ci ratio: 1.035794e-01	ci left: 6.133016e-03	ci right 6.807359e-03	k: 1422	n:220000
THAP5   220000 perm   62 sec   (3538 perm/sec)   p_kst 6.463636e-03   p_cons 5.102864e-01   p_joint 2.946364e-02

Joint ci ratio: 5.471383e-02	ci left: 2.123280e-02	ci right 2.243147e-02	k: 5020	n:230000
Cons ci ratio: 8.008427e-03	ci left: 5.081678e-01	ci right 5.122581e-01	k: 117349	n:230000
KS ci ratio: 1.016361e-01	ci left: 6.099351e-03	ci right 6.756658e-03	k: 1477	n:230000
THAP5   230000 perm   66 sec   (3484 perm/sec)   p_kst 6.421739e-03   p_cons 5.102130e-01   p_joint 2.182609e-02

Joint ci ratio: 5.381600e-02	ci left: 2.104677e-02	ci right 2.221483e-02	k: 5190	n:240000
Cons ci ratio: 7.840474e-03	ci left: 5.081687e-01	ci right 5.121727e-01	k: 122441	n:240000
KS ci ratio: 9.934266e-02	ci left: 6.125490e-03	ci right 6.769850e-03	k: 1546	n:240000
THAP5   240000 perm   70 sec   (3431 perm/sec)   p_kst 6.441667e-03   p_cons 5.101708e-01   p_joint 2.162500e-02

Outputting figure to mutsig2_images.part000000000174/THAP5.3_1200_240000_0.0064417_0.51017_0.021625.png
                gene_name: THAP5
               theta_stop: 0.099 
                    nperm: 240000 
                     p_ks: 0.0064 
        ci_ks_bounds_left: 0.0061 
       ci_ks_bounds_right: 0.0068 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.022 

Current progress: 72 percent done.
THBS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.171733e-02	ci left: 5.946365e-01	ci right 6.139027e-01	k: 6043	n:10000
Cons ci ratio: 2.551451e-02	ci left: 6.933310e-01	ci right 7.113510e-01	k: 7024	n:10000
KS ci ratio: 4.461276e-02	ci left: 4.258518e-01	ci right 4.453858e-01	k: 4356	n:10000
THBS3   10000 perm   2 sec   (4857 perm/sec)   p_kst 4.356000e-01   p_cons 7.024000e-01   p_joint 6.043000e-01

Outputting figure to mutsig2_images.part000000000174/THBS3.3_2963_10000_0.4356_0.7024_0.6043.png
                gene_name: THBS3
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 73 percent done.
THSD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.730797e-02	ci left: 3.973494e-01	ci right 4.167048e-01	k: 4070	n:10000
Cons ci ratio: 6.992814e-02	ci left: 2.306682e-01	ci right 2.474840e-01	k: 2390	n:10000
KS ci ratio: 4.616116e-02	ci left: 4.092047e-01	ci right 4.286425e-01	k: 4189	n:10000
THSD1   10000 perm   2 sec   (5330 perm/sec)   p_kst 4.189000e-01   p_cons 2.390000e-01   p_joint 4.070000e-01

Outputting figure to mutsig2_images.part000000000174/THSD1.3_2575_10000_0.4189_0.239_0.407.png
                gene_name: THSD1
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 75 percent done.
THUMPD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.809499e-02	ci left: 2.403508e-01	ci right 2.573957e-01	k: 2488	n:10000
Cons ci ratio: 4.500499e-02	ci left: 4.215643e-01	ci right 4.410757e-01	k: 4313	n:10000
KS ci ratio: 9.863257e-02	ci left: 1.296319e-01	ci right 1.431807e-01	k: 1363	n:10000
THUMPD2   10000 perm   2 sec   (6063 perm/sec)   p_kst 1.363000e-01   p_cons 4.313000e-01   p_joint 2.488000e-01

Outputting figure to mutsig2_images.part000000000174/THUMPD2.3_1552_10000_0.1363_0.4313_0.2488.png
                gene_name: THUMPD2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 77 percent done.
TFCP2L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.611926e-02	ci left: 8.483534e-01	ci right 8.622389e-01	k: 8554	n:10000
Cons ci ratio: 1.688045e-02	ci left: 8.363308e-01	ci right 8.506684e-01	k: 8436	n:10000
KS ci ratio: 5.987856e-02	ci left: 2.909285e-01	ci right 3.089882e-01	k: 2999	n:10000
TFCP2L1   10000 perm   2 sec   (6110 perm/sec)   p_kst 2.999000e-01   p_cons 8.436000e-01   p_joint 8.554000e-01

Outputting figure to mutsig2_images.part000000000174/TFCP2L1.2_1500_10000_0.2999_0.8436_0.8554.png
                gene_name: TFCP2L1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 78 percent done.
TGOLN2
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 80 percent done.
TH1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.319896e-02	ci left: 7.318901e-01	ci right 7.491696e-01	k: 7406	n:10000
KS ci ratio: 1.635946e-02	ci left: 8.445820e-01	ci right 8.586125e-01	k: 8517	n:10000
TH1L   10000 perm   2 sec   (5810 perm/sec)   p_kst 8.517000e-01   p_cons 7.406000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/TH1L.2_1833_10000_0.8517_0.7406_1.png
                gene_name: TH1L
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
THAP3
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 83 percent done.
THAP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.679855e-02	ci left: 1.619969e-01	ci right 1.767962e-01	k: 1693	n:10000
Cons ci ratio: 8.208438e-02	ci left: 1.780224e-01	ci right 1.933612e-01	k: 1856	n:10000
KS ci ratio: 3.161134e-02	ci left: 5.962428e-01	ci right 6.154955e-01	k: 6059	n:10000
THAP4   10000 perm   2 sec   (5701 perm/sec)   p_kst 6.059000e-01   p_cons 1.856000e-01   p_joint 1.693000e-01

Outputting figure to mutsig2_images.part000000000174/THAP4.2_1766_10000_0.6059_0.1856_0.1693.png
                gene_name: THAP4
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 85 percent done.
THBD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.468336e-02	ci left: 8.704028e-01	ci right 8.833768e-01	k: 8770	n:10000
KS ci ratio: 3.060133e-02	ci left: 6.117087e-01	ci right 6.308206e-01	k: 6213	n:10000
THBD   10000 perm   2 sec   (6225 perm/sec)   p_kst 6.213000e-01   p_cons 8.770000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/THBD.2_1732_10000_0.6213_0.877_1.png
                gene_name: THBD
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
THBS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.465850e-02	ci left: 2.079681e-01	ci right 2.241977e-01	k: 2160	n:10000
KS ci ratio: 2.699424e-02	ci left: 6.690435e-01	ci right 6.874525e-01	k: 6783	n:10000
THBS4   10000 perm   2 sec   (5360 perm/sec)   p_kst 6.783000e-01   p_cons 2.160000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/THBS4.2_2974_10000_0.6783_0.216_1.png
                gene_name: THBS4
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
THEM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.132906e-02	ci left: 4.636729e-01	ci right 4.833426e-01	k: 4735	n:10000
KS ci ratio: 2.008330e-02	ci left: 7.840118e-01	ci right 8.000177e-01	k: 7921	n:10000
THEM4   10000 perm   1 sec   (6780 perm/sec)   p_kst 7.921000e-01   p_cons 4.735000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000174/THEM4.2_747_10000_0.7921_0.4735_1.png
                gene_name: THEM4
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
THOC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.611379e-02	ci left: 4.097030e-01	ci right 4.291440e-01	k: 4194	n:10000
Cons ci ratio: 5.257462e-02	ci left: 3.478011e-01	ci right 3.666822e-01	k: 3572	n:10000
KS ci ratio: 1.117840e-01	ci left: 1.033465e-01	ci right 1.156820e-01	k: 1094	n:10000
THOC3   10000 perm   2 sec   (6333 perm/sec)   p_kst 1.094000e-01   p_cons 3.572000e-01   p_joint 4.194000e-01

Joint ci ratio: 4.056007e-02	ci left: 3.118460e-01	ci right 3.248068e-01	k: 6366	n:20000
Cons ci ratio: 3.716767e-02	ci left: 3.507046e-01	ci right 3.640369e-01	k: 7147	n:20000
KS ci ratio: 7.894354e-02	ci left: 1.054008e-01	ci right 1.141130e-01	k: 2194	n:20000
THOC3   20000 perm   4 sec   (5551 perm/sec)   p_kst 1.097000e-01   p_cons 3.573500e-01   p_joint 3.183000e-01

Outputting figure to mutsig2_images.part000000000174/THOC3.2_1080_20000_0.1097_0.35735_0.3183.png
                gene_name: THOC3
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 92 percent done.
THOC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.659946e-02	ci left: 5.243644e-01	ci right 5.440157e-01	k: 5342	n:10000
Cons ci ratio: 3.531015e-02	ci left: 5.421894e-01	ci right 5.617803e-01	k: 5520	n:10000
KS ci ratio: 4.040405e-02	ci left: 4.749603e-01	ci right 4.946485e-01	k: 4848	n:10000
THOC6   10000 perm   2 sec   (6545 perm/sec)   p_kst 4.848000e-01   p_cons 5.520000e-01   p_joint 5.342000e-01

Outputting figure to mutsig2_images.part000000000174/THOC6.2_1078_10000_0.4848_0.552_0.5342.png
                gene_name: THOC6
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 93 percent done.
THPO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.878641e-03	ci left: 9.882892e-01	ci right 9.922172e-01	k: 9904	n:10000
Cons ci ratio: 8.921899e-02	ci left: 1.545332e-01	ci right 1.690644e-01	k: 1617	n:10000
KS ci ratio: 3.095449e-03	ci left: 9.921711e-01	ci right 9.953309e-01	k: 9939	n:10000
THPO   10000 perm   2 sec   (6520 perm/sec)   p_kst 9.939000e-01   p_cons 1.617000e-01   p_joint 9.904000e-01

Outputting figure to mutsig2_images.part000000000174/THPO.2_1082_10000_0.9939_0.1617_0.9904.png
                gene_name: THPO
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 1.00 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 95 percent done.
THRA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.694906e-02	ci left: 2.466773e-01	ci right 2.638654e-01	k: 2552	n:10000
Cons ci ratio: 4.857548e-02	ci left: 3.847036e-01	ci right 4.039580e-01	k: 3943	n:10000
KS ci ratio: 2.657053e-01	ci left: 1.846678e-02	ci right 2.421679e-02	k: 212	n:10000
THRA   10000 perm   2 sec   (6173 perm/sec)   p_kst 2.120000e-02   p_cons 3.943000e-01   p_joint 2.552000e-01

Joint ci ratio: 1.160707e-01	ci left: 5.081038e-02	ci right 5.712009e-02	k: 1078	n:20000
Cons ci ratio: 3.369871e-02	ci left: 3.966902e-01	ci right 4.103379e-01	k: 8070	n:20000
KS ci ratio: 1.881123e-01	ci left: 1.924843e-02	ci right 2.329242e-02	k: 424	n:20000
THRA   20000 perm   4 sec   (5498 perm/sec)   p_kst 2.120000e-02   p_cons 4.035000e-01   p_joint 5.390000e-02

Joint ci ratio: 8.389662e-02	ci left: 6.498045e-02	ci right 7.070358e-02	k: 2034	n:30000
Cons ci ratio: 2.765916e-02	ci left: 3.954472e-01	ci right 4.065719e-01	k: 12030	n:30000
KS ci ratio: 1.545255e-01	ci left: 1.937526e-02	ci right 2.265175e-02	k: 629	n:30000
THRA   30000 perm   6 sec   (5226 perm/sec)   p_kst 2.096667e-02   p_cons 4.010000e-01   p_joint 6.780000e-02

Joint ci ratio: 4.598711e-02	ci left: 1.501783e-01	ci right 1.572720e-01	k: 6148	n:40000
Cons ci ratio: 2.396389e-02	ci left: 3.959923e-01	ci right 4.056221e-01	k: 16032	n:40000
KS ci ratio: 1.334992e-01	ci left: 1.968976e-02	ci right 2.253036e-02	k: 843	n:40000
THRA   40000 perm   8 sec   (5018 perm/sec)   p_kst 2.107500e-02   p_cons 4.008000e-01   p_joint 1.537000e-01

Joint ci ratio: 6.514797e-02	ci left: 6.531608e-02	ci right 6.973429e-02	k: 3375	n:50000
Cons ci ratio: 2.140207e-02	ci left: 3.972191e-01	ci right 4.058324e-01	k: 20076	n:50000
KS ci ratio: 1.205784e-01	ci left: 1.945050e-02	ci right 2.196558e-02	k: 1034	n:50000
THRA   50000 perm   10 sec   (4878 perm/sec)   p_kst 2.068000e-02   p_cons 4.015200e-01   p_joint 6.750000e-02

Joint ci ratio: 4.839145e-02	ci left: 9.619270e-02	ci right 1.009795e-01	k: 5914	n:60000
Cons ci ratio: 1.949361e-02	ci left: 3.986723e-01	ci right 4.065371e-01	k: 24156	n:60000
KS ci ratio: 1.090021e-01	ci left: 1.994869e-02	ci right 2.226462e-02	k: 1265	n:60000
THRA   60000 perm   13 sec   (4747 perm/sec)   p_kst 2.108333e-02   p_cons 4.026000e-01   p_joint 9.856667e-02

Joint ci ratio: 4.493498e-02	ci left: 9.584948e-02	ci right 1.002696e-01	k: 6863	n:70000
Cons ci ratio: 1.809653e-02	ci left: 3.976659e-01	ci right 4.049423e-01	k: 28091	n:70000
KS ci ratio: 1.025235e-01	ci left: 1.940733e-02	ci right 2.151840e-02	k: 1431	n:70000
THRA   70000 perm   15 sec   (4630 perm/sec)   p_kst 2.044286e-02   p_cons 4.013000e-01   p_joint 9.804286e-02

Joint ci ratio: 4.447114e-02	ci left: 8.655294e-02	ci right 9.050196e-02	k: 7081	n:80000
Cons ci ratio: 1.686982e-02	ci left: 3.995485e-01	ci right 4.063586e-01	k: 32236	n:80000
KS ci ratio: 9.541425e-02	ci left: 1.967572e-02	ci right 2.165926e-02	k: 1652	n:80000
THRA   80000 perm   18 sec   (4529 perm/sec)   p_kst 2.065000e-02   p_cons 4.029500e-01   p_joint 8.851250e-02

Outputting figure to mutsig2_images.part000000000174/THRA.2_1632_80000_0.02065_0.40295_0.088512.png
                gene_name: THRA
               theta_stop: 0.095 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.091 

Current progress: 97 percent done.
THSD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.144074e-02	ci left: 2.230647e-01	ci right 2.396920e-01	k: 2313	n:10000
Cons ci ratio: 7.731236e-02	ci left: 1.965332e-01	ci right 2.124394e-01	k: 2044	n:10000
KS ci ratio: 4.745527e-02	ci left: 3.958555e-01	ci right 4.151996e-01	k: 4055	n:10000
THSD4   10000 perm   2 sec   (4946 perm/sec)   p_kst 4.055000e-01   p_cons 2.044000e-01   p_joint 2.313000e-01

Outputting figure to mutsig2_images.part000000000174/THSD4.2_3125_10000_0.4055_0.2044_0.2313.png
                gene_name: THSD4
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 98 percent done.
THUMPD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.144619e-02	ci left: 9.160549e-01	ci right 9.266981e-01	k: 9215	n:10000
Cons ci ratio: 1.596919e-02	ci left: 8.506986e-01	ci right 8.644924e-01	k: 8577	n:10000
KS ci ratio: 3.783063e-02	ci left: 5.078524e-01	ci right 5.275373e-01	k: 5177	n:10000
THUMPD1   10000 perm   2 sec   (6480 perm/sec)   p_kst 5.177000e-01   p_cons 8.577000e-01   p_joint 9.215000e-01

Outputting figure to mutsig2_images.part000000000174/THUMPD1.2_1078_10000_0.5177_0.8577_0.9215.png
                gene_name: THUMPD1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000174
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 174 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1548>
Subject: Job 9894178: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1548>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000175> was used as the working directory.
Started at Sat Oct  6 00:32:31 2012
Results reported at Sat Oct  6 01:06:45 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000175.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000175.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 175  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000175.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2297.16 sec.
    Max Memory :      3674 MB
    Max Swap   :      5945 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
175
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 175
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 175: processing genes 15687 - 15776
Calculating significance of each gene.
Using projection method.
15687	THY1	1
15688	THYN1	1
15689	TIA1	5.682669e-01
15690	TIAF1	1.566764e-01
15691	TIAL1	1.284006e-01
15692	TIAM1	1.092782e-01
15693	TIAM2	1.193492e-01
15694	TICAM1	5.743374e-01
15695	TICAM2	1
15696	TIE1	8.253355e-01
15697	TIFA	5.074738e-01
15698	TIFAB	1
15699	TIGD2	8.287007e-01
15700	TIGD3	1
15701	TIGD4	7.882717e-02
15702	TIGD5	1
15703	TIGD6	9.273494e-01
15704	TIGD7	7.032614e-01
15705	TIGIT	3.909137e-02
15706	TIMD4	1
15707	TIMELESS	7.873918e-01
15708	TIMM10	2.459802e-01
15709	TIMM13	1
15710	TIMM16	1
15711	TIMM17A	1
15712	TIMM17B	4.532725e-01
15713	TIMM22	5.092190e-01
15714	TIMM23	1
15715	TIMM44	6.195909e-01
15716	TIMM50	4.848441e-01
15717	TIMM8A	1
15718	TIMM8B	3.162517e-01
15719	TIMM9	1
15720	TIMP1	1.454298e-01
15721	TIMP2	1.814917e-01
15722	TIMP3	2.261028e-01
15723	TIMP4	3.519551e-01
15724	TINAG	3.346300e-01
15725	TINAGL1	6.697926e-01
15726	TINF2	8.505097e-01
15727	TIPARP	1.414384e-01
15728	TIPIN	5.012131e-01
15729	TIPRL	6.467021e-01
15730	TIRAP	6.518939e-01
15731	TJAP1	8.617099e-01
15732	TJP1	8.960642e-01
15733	TJP2	8.799517e-01
15734	TJP3	9.985252e-01
15735	TK1	6.364879e-01
15736	TK2	7.758911e-01
15737	TKT	8.217917e-01
15738	TKTL1	2.592604e-01
15739	TKTL2	6.330338e-02
15740	TLCD1	1
15741	TLE1	9.635037e-01
15742	TLE2	8.044568e-01
15743	TLE3	8.753914e-01
15744	TLE4	9.513783e-02
15745	TLE6	8.315230e-01
15746	TLK1	2.735919e-01
15747	TLK2	9.208325e-01
15748	TLL1	2.800672e-06
15749	TLL2	8.786637e-02
15750	TLN1	9.400184e-01
15751	TLN2	9.944676e-01
15752	TLR1	7.750792e-01
15753	TLR10	8.131309e-01
15754	TLR2	4.982458e-01
15755	TLR3	1.768741e-01
15756	TLR4	4.909778e-01
15757	TLR5	6.409630e-01
15758	TLR6	8.109855e-01
15759	TLR7	4.488691e-01
15760	TLR8	2.826735e-01
15761	TLR9	5.682494e-01
15762	TLX1	5.970463e-01
In gene TLX1NB the following bins exceed PROBCAP:
    COAD-AA-A022	categ 6	N = 63      n = 1	mu =   4.27e-06
    READ-AG-4005	categ 6	N = 63      n = 1	mu =   5.26e-07
15763	TLX1NB	1.306012e-03
15764	TLX2	1
15765	TLX3	5.544442e-01
15766	TM2D1	2.401708e-01
15767	TM2D2	1.851712e-01
15768	TM2D3	1
15769	TM4SF1	5.161599e-01
15770	TM4SF18	1
15771	TM4SF19	3.297177e-01
15772	TM4SF20	6.219871e-01
15773	TM4SF4	1.731356e-01
15774	TM4SF5	1
15775	TM6SF1	2.724955e-01
15776	TM6SF2	1
Done

Running MutSig 2:
Scatter job 175: processing genes 15687 - 15776
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TIAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.442409e-01	ci left: 1.059811e-02	ci right 1.509234e-02	k: 127	n:10000
Cons ci ratio: 1.767052e-01	ci left: 4.274287e-02	ci right 5.112360e-02	k: 468	n:10000
KS ci ratio: 2.043162e-01	ci left: 3.186407e-02	ci right 3.920972e-02	k: 354	n:10000
TIAM1   10000 perm   3 sec   (3531 perm/sec)   p_kst 3.540000e-02   p_cons 4.680000e-02   p_joint 1.270000e-02

Joint ci ratio: 2.504519e-01	ci left: 1.058411e-02	ci right 1.366018e-02	k: 241	n:20000
Cons ci ratio: 1.280629e-01	ci left: 4.187748e-02	ci right 4.765581e-02	k: 894	n:20000
KS ci ratio: 1.411110e-01	ci left: 3.452303e-02	ci right 3.981263e-02	k: 742	n:20000
TIAM1   20000 perm   10 sec   (1941 perm/sec)   p_kst 3.710000e-02   p_cons 4.470000e-02   p_joint 1.205000e-02

Joint ci ratio: 1.033802e-01	ci left: 4.336429e-02	ci right 4.812418e-02	k: 1371	n:30000
Cons ci ratio: 1.050355e-01	ci left: 4.203170e-02	ci right 4.672372e-02	k: 1330	n:30000
KS ci ratio: 1.147638e-01	ci left: 3.528116e-02	ci right 3.960901e-02	k: 1122	n:30000
TIAM1   30000 perm   14 sec   (2154 perm/sec)   p_kst 3.740000e-02   p_cons 4.433333e-02   p_joint 4.570000e-02

Joint ci ratio: 1.066423e-01	ci left: 3.092988e-02	ci right 3.443839e-02	k: 1306	n:40000
Cons ci ratio: 7.940699e-02	ci left: 5.514020e-02	ci right 5.972431e-02	k: 2296	n:40000
KS ci ratio: 1.010962e-01	ci left: 3.439075e-02	ci right 3.807697e-02	k: 1448	n:40000
TIAM1   40000 perm   17 sec   (2291 perm/sec)   p_kst 3.620000e-02   p_cons 5.740000e-02   p_joint 3.265000e-02

Joint ci ratio: 1.013317e-01	ci left: 2.758555e-02	ci right 3.054947e-02	k: 1452	n:50000
Cons ci ratio: 7.105347e-02	ci left: 5.533757e-02	ci right 5.943401e-02	k: 2868	n:50000
KS ci ratio: 9.030058e-02	ci left: 3.467756e-02	ci right 3.797656e-02	k: 1815	n:50000
TIAM1   50000 perm   21 sec   (2353 perm/sec)   p_kst 3.630000e-02   p_cons 5.736000e-02   p_joint 2.904000e-02

Joint ci ratio: 1.121656e-01	ci left: 1.882988e-02	ci right 2.108355e-02	k: 1196	n:60000
Cons ci ratio: 7.011384e-02	ci left: 4.777788e-02	ci right 5.126585e-02	k: 2970	n:60000
KS ci ratio: 8.218277e-02	ci left: 3.502993e-02	ci right 3.804845e-02	k: 2191	n:60000
TIAM1   60000 perm   25 sec   (2404 perm/sec)   p_kst 3.651667e-02   p_cons 4.950000e-02   p_joint 1.993333e-02

Joint ci ratio: 9.662594e-02	ci left: 2.186034e-02	ci right 2.409373e-02	k: 1607	n:70000
Cons ci ratio: 6.474763e-02	ci left: 4.814381e-02	ci right 5.137935e-02	k: 3482	n:70000
KS ci ratio: 7.543579e-02	ci left: 3.573997e-02	ci right 3.855571e-02	k: 2599	n:70000
TIAM1   70000 perm   29 sec   (2444 perm/sec)   p_kst 3.712857e-02   p_cons 4.974286e-02   p_joint 2.295714e-02

Outputting figure to mutsig2_images.part000000000175/TIAM1.17_4876_70000_0.037129_0.049743_0.022957.png
                gene_name: TIAM1
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 2 percent done.
TLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.661417e-02	ci left: 5.241642e-01	ci right 5.438160e-01	k: 5340	n:10000
Cons ci ratio: 5.209730e-02	ci left: 3.519757e-01	ci right 3.709051e-01	k: 3614	n:10000
KS ci ratio: 3.355274e-02	ci left: 5.673461e-01	ci right 5.868090e-01	k: 5771	n:10000
TLL1   10000 perm   2 sec   (4235 perm/sec)   p_kst 5.771000e-01   p_cons 3.614000e-01   p_joint 5.340000e-01

Outputting figure to mutsig2_images.part000000000175/TLL1.17_3126_10000_0.5771_0.3614_0.534.png
                gene_name: TLL1
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 4 percent done.
TIAM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.043162e-01	ci left: 3.186407e-02	ci right 3.920972e-02	k: 354	n:10000
Cons ci ratio: 3.629176e-02	ci left: 5.285691e-01	ci right 5.482085e-01	k: 5384	n:10000
KS ci ratio: 3.231538e-01	ci left: 1.215729e-02	ci right 1.693165e-02	k: 144	n:10000
TIAM2   10000 perm   3 sec   (3582 perm/sec)   p_kst 1.440000e-02   p_cons 5.384000e-01   p_joint 3.540000e-02

Joint ci ratio: 1.296634e-01	ci left: 4.085991e-02	ci right 4.657370e-02	k: 873	n:20000
Cons ci ratio: 2.584511e-02	ci left: 5.279577e-01	ci right 5.418321e-01	k: 10698	n:20000
KS ci ratio: 2.184120e-01	ci left: 1.411743e-02	ci right 1.762537e-02	k: 316	n:20000
TIAM2   20000 perm   6 sec   (3271 perm/sec)   p_kst 1.580000e-02   p_cons 5.349000e-01   p_joint 4.365000e-02

Joint ci ratio: 1.238762e-01	ci left: 3.029580e-02	ci right 3.432877e-02	k: 968	n:30000
Cons ci ratio: 2.241329e-02	ci left: 4.991588e-01	ci right 5.105070e-01	k: 15145	n:30000
KS ci ratio: 1.747285e-01	ci left: 1.505690e-02	ci right 1.797116e-02	k: 494	n:30000
TIAM2   30000 perm   10 sec   (3149 perm/sec)   p_kst 1.646667e-02   p_cons 5.048333e-01   p_joint 3.226667e-02

Joint ci ratio: 1.056437e-01	ci left: 3.151445e-02	ci right 3.505373e-02	k: 1330	n:40000
Cons ci ratio: 1.932002e-02	ci left: 5.022627e-01	ci right 5.120862e-01	k: 20287	n:40000
KS ci ratio: 1.487067e-01	ci left: 1.580399e-02	ci right 1.836681e-02	k: 682	n:40000
TIAM2   40000 perm   13 sec   (3075 perm/sec)   p_kst 1.705000e-02   p_cons 5.071750e-01   p_joint 3.325000e-02

Joint ci ratio: 8.704471e-02	ci left: 3.728074e-02	ci right 4.069305e-02	k: 1948	n:50000
Cons ci ratio: 1.730313e-02	ci left: 5.021275e-01	ci right 5.109118e-01	k: 25326	n:50000
KS ci ratio: 1.280428e-01	ci left: 1.722067e-02	ci right 1.959571e-02	k: 919	n:50000
TIAM2   50000 perm   17 sec   (3013 perm/sec)   p_kst 1.838000e-02   p_cons 5.065200e-01   p_joint 3.896000e-02

Joint ci ratio: 8.055656e-02	ci left: 3.643516e-02	ci right 3.950974e-02	k: 2277	n:60000
Cons ci ratio: 1.580361e-02	ci left: 5.022577e-01	ci right 5.102751e-01	k: 30376	n:60000
KS ci ratio: 1.170489e-01	ci left: 1.727491e-02	ci right 1.943870e-02	k: 1100	n:60000
TIAM2   60000 perm   20 sec   (2964 perm/sec)   p_kst 1.833333e-02   p_cons 5.062667e-01   p_joint 3.795000e-02

Joint ci ratio: 7.071054e-02	ci left: 4.056804e-02	ci right 4.355578e-02	k: 2943	n:70000
Cons ci ratio: 1.464585e-02	ci left: 5.020604e-01	ci right 5.094820e-01	k: 35404	n:70000
KS ci ratio: 1.064205e-01	ci left: 1.800146e-02	ci right 2.003869e-02	k: 1330	n:70000
TIAM2   70000 perm   24 sec   (2918 perm/sec)   p_kst 1.900000e-02   p_cons 5.057714e-01   p_joint 4.204286e-02

Joint ci ratio: 7.137129e-02	ci left: 3.503909e-02	ci right 3.764467e-02	k: 2906	n:80000
Cons ci ratio: 1.369645e-02	ci left: 5.024291e-01	ci right 5.093705e-01	k: 40472	n:80000
KS ci ratio: 9.965236e-02	ci left: 1.802859e-02	ci right 1.993152e-02	k: 1517	n:80000
TIAM2   80000 perm   28 sec   (2874 perm/sec)   p_kst 1.896250e-02   p_cons 5.059000e-01   p_joint 3.632500e-02

Outputting figure to mutsig2_images.part000000000175/TIAM2.16_5202_80000_0.018963_0.5059_0.036325.png
                gene_name: TIAM2
               theta_stop: 0.100 
                    nperm: 80000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 6 percent done.
TLL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.169949e-01	ci left: 2.816365e-02	ci right 3.511272e-02	k: 315	n:10000
Cons ci ratio: 3.940154e-01	ci left: 7.872887e-03	ci right 1.182054e-02	k: 97	n:10000
KS ci ratio: 8.018115e-02	ci left: 1.851083e-01	ci right 2.006710e-01	k: 1928	n:10000
TLL2   10000 perm   2 sec   (4674 perm/sec)   p_kst 1.928000e-01   p_cons 9.700000e-03   p_joint 3.150000e-02

Joint ci ratio: 2.293135e-01	ci left: 1.274765e-02	ci right 1.609571e-02	k: 287	n:20000
Cons ci ratio: 2.933313e-01	ci left: 7.552441e-03	ci right 1.019332e-02	k: 176	n:20000
KS ci ratio: 5.666099e-02	ci left: 1.875999e-01	ci right 1.985895e-01	k: 3861	n:20000
TLL2   20000 perm   5 sec   (4199 perm/sec)   p_kst 1.930500e-01   p_cons 8.800000e-03   p_joint 1.435000e-02

Joint ci ratio: 1.238762e-01	ci left: 3.029580e-02	ci right 3.432877e-02	k: 968	n:30000
Cons ci ratio: 2.379288e-01	ci left: 7.899689e-03	ci right 1.006368e-02	k: 268	n:30000
KS ci ratio: 4.585698e-02	ci left: 1.913557e-01	ci right 2.003700e-01	k: 5875	n:30000
TLL2   30000 perm   7 sec   (4010 perm/sec)   p_kst 1.958333e-01   p_cons 8.933333e-03   p_joint 3.226667e-02

Joint ci ratio: 1.368497e-01	ci left: 1.872293e-02	ci right 2.149735e-02	k: 803	n:40000
Cons ci ratio: 2.145667e-01	ci left: 7.386910e-03	ci right 9.185572e-03	k: 330	n:40000
KS ci ratio: 4.005920e-02	ci left: 1.892664e-01	ci right 1.970282e-01	k: 7725	n:40000
TLL2   40000 perm   10 sec   (3889 perm/sec)   p_kst 1.931250e-01   p_cons 8.250000e-03   p_joint 2.007500e-02

Joint ci ratio: 1.406381e-01	ci left: 1.422303e-02	ci right 1.639377e-02	k: 764	n:50000
Cons ci ratio: 1.952125e-01	ci left: 7.218797e-03	ci right 8.799126e-03	k: 399	n:50000
KS ci ratio: 3.591422e-02	ci left: 1.889528e-01	ci right 1.958829e-01	k: 9620	n:50000
TLL2   50000 perm   13 sec   (3801 perm/sec)   p_kst 1.924000e-01   p_cons 7.980000e-03   p_joint 1.528000e-02

Joint ci ratio: 1.373172e-01	ci left: 1.247914e-02	ci right 1.433503e-02	k: 803	n:60000
Cons ci ratio: 1.772757e-01	ci left: 7.366459e-03	ci right 8.815062e-03	k: 484	n:60000
KS ci ratio: 3.277137e-02	ci left: 1.893850e-01	ci right 1.957114e-01	k: 11552	n:60000
TLL2   60000 perm   16 sec   (3720 perm/sec)   p_kst 1.925333e-01   p_cons 8.066667e-03   p_joint 1.338333e-02

Joint ci ratio: 9.209566e-02	ci left: 2.406547e-02	ci right 2.640268e-02	k: 1765	n:70000
Cons ci ratio: 1.541191e-01	ci left: 8.451028e-03	ci right 9.875819e-03	k: 640	n:70000
KS ci ratio: 3.032300e-02	ci left: 1.897980e-01	ci right 1.956561e-01	k: 13490	n:70000
TLL2   70000 perm   19 sec   (3648 perm/sec)   p_kst 1.927143e-01   p_cons 9.142857e-03   p_joint 2.521429e-02

Joint ci ratio: 9.093677e-02	ci left: 2.166674e-02	ci right 2.374307e-02	k: 1815	n:80000
Cons ci ratio: 1.452266e-01	ci left: 8.369226e-03	ci right 9.691747e-03	k: 721	n:80000
KS ci ratio: 2.838658e-02	ci left: 1.897480e-01	ci right 1.952243e-01	k: 15398	n:80000
TLL2   80000 perm   22 sec   (3580 perm/sec)   p_kst 1.924750e-01   p_cons 9.012500e-03   p_joint 2.268750e-02

Joint ci ratio: 8.455771e-02	ci left: 2.233515e-02	ci right 2.431796e-02	k: 2098	n:90000
Cons ci ratio: 1.375418e-01	ci left: 8.328915e-03	ci right 9.569712e-03	k: 804	n:90000
KS ci ratio: 2.677354e-02	ci left: 1.897849e-01	ci right 1.949461e-01	k: 17312	n:90000
TLL2   90000 perm   26 sec   (3521 perm/sec)   p_kst 1.923556e-01   p_cons 8.933333e-03   p_joint 2.331111e-02

Joint ci ratio: 8.999383e-02	ci left: 1.778137e-02	ci right 1.946671e-02	k: 1861	n:100000
Cons ci ratio: 1.305901e-01	ci left: 8.346525e-03	ci right 9.522224e-03	k: 892	n:100000
KS ci ratio: 2.542143e-02	ci left: 1.896523e-01	ci right 1.945456e-01	k: 19209	n:100000
TLL2   100000 perm   29 sec   (3460 perm/sec)   p_kst 1.920900e-01   p_cons 8.920000e-03   p_joint 1.861000e-02

Joint ci ratio: 7.108704e-02	ci left: 2.594290e-02	ci right 2.786397e-02	k: 2958	n:110000
Cons ci ratio: 1.239602e-01	ci left: 8.450333e-03	ci right 9.575783e-03	k: 990	n:110000
KS ci ratio: 2.422137e-02	ci left: 1.899837e-01	ci right 1.946508e-01	k: 21154	n:110000
TLL2   110000 perm   32 sec   (3410 perm/sec)   p_kst 1.923091e-01   p_cons 9.000000e-03   p_joint 2.689091e-02

Joint ci ratio: 6.973249e-02	ci left: 2.476285e-02	ci right 2.656017e-02	k: 3078	n:120000
Cons ci ratio: 1.191896e-01	ci left: 8.400601e-03	ci right 9.473333e-03	k: 1071	n:120000
KS ci ratio: 2.314376e-02	ci left: 1.907040e-01	ci right 1.951775e-01	k: 23152	n:120000
TLL2   120000 perm   36 sec   (3355 perm/sec)   p_kst 1.929333e-01   p_cons 8.925000e-03   p_joint 2.565000e-02

Joint ci ratio: 7.493655e-02	ci left: 1.984228e-02	ci right 2.139459e-02	k: 2679	n:130000
Cons ci ratio: 1.146299e-01	ci left: 8.404065e-03	ci right 9.433405e-03	k: 1158	n:130000
KS ci ratio: 2.196193e-02	ci left: 1.946647e-01	ci right 1.989950e-01	k: 25587	n:130000
TLL2   130000 perm   39 sec   (3307 perm/sec)   p_kst 1.968231e-01   p_cons 8.907692e-03   p_joint 2.060769e-02

Joint ci ratio: 7.371321e-02	ci left: 1.906962e-02	ci right 2.053608e-02	k: 2771	n:140000
Cons ci ratio: 1.112797e-01	ci left: 8.296563e-03	ci right 9.281086e-03	k: 1229	n:140000
KS ci ratio: 2.116846e-02	ci left: 1.946632e-01	ci right 1.988351e-01	k: 27544	n:140000
TLL2   140000 perm   43 sec   (3257 perm/sec)   p_kst 1.967429e-01   p_cons 8.778571e-03   p_joint 1.979286e-02

Joint ci ratio: 6.912921e-02	ci left: 2.026066e-02	ci right 2.171793e-02	k: 3147	n:150000
Cons ci ratio: 1.078727e-01	ci left: 8.255683e-03	ci right 9.203454e-03	k: 1308	n:150000
KS ci ratio: 2.040314e-02	ci left: 1.954679e-01	ci right 1.995038e-01	k: 29622	n:150000
TLL2   150000 perm   47 sec   (3209 perm/sec)   p_kst 1.974800e-01   p_cons 8.720000e-03   p_joint 2.098000e-02

Joint ci ratio: 6.491753e-02	ci left: 2.155743e-02	ci right 2.300995e-02	k: 3564	n:160000
Cons ci ratio: 1.045329e-01	ci left: 8.256842e-03	ci right 9.173594e-03	k: 1393	n:160000
KS ci ratio: 1.975871e-02	ci left: 1.954769e-01	ci right 1.993840e-01	k: 31588	n:160000
TLL2   160000 perm   51 sec   (3164 perm/sec)   p_kst 1.974250e-01   p_cons 8.706250e-03   p_joint 2.227500e-02

Joint ci ratio: 6.409412e-02	ci left: 2.083891e-02	ci right 2.222454e-02	k: 3659	n:170000
Cons ci ratio: 1.015200e-01	ci left: 8.252530e-03	ci right 9.140817e-03	k: 1477	n:170000
KS ci ratio: 1.917742e-02	ci left: 1.953929e-01	ci right 1.991821e-01	k: 33538	n:170000
TLL2   170000 perm   54 sec   (3122 perm/sec)   p_kst 1.972824e-01   p_cons 8.688235e-03   p_joint 2.152353e-02

Joint ci ratio: 6.280615e-02	ci left: 2.051759e-02	ci right 2.185345e-02	k: 3812	n:180000
Cons ci ratio: 9.853087e-02	ci left: 8.286972e-03	ci right 9.151184e-03	k: 1568	n:180000
KS ci ratio: 1.864164e-02	ci left: 1.953695e-01	ci right 1.990513e-01	k: 35497	n:180000
TLL2   180000 perm   58 sec   (3081 perm/sec)   p_kst 1.972056e-01   p_cons 8.711111e-03   p_joint 2.117778e-02

Outputting figure to mutsig2_images.part000000000175/TLL2.10_3132_180000_0.19721_0.0087111_0.021178.png
                gene_name: TLL2
               theta_stop: 0.099 
                    nperm: 180000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.0087 
      ci_cons_bounds_left: 0.0083 
     ci_cons_bounds_right: 0.0092 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.022 

Current progress: 8 percent done.
TLR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.064764e-02	ci left: 1.833364e-01	ci right 1.988440e-01	k: 1910	n:10000
Cons ci ratio: 4.601925e-02	ci left: 4.106995e-01	ci right 4.301469e-01	k: 4204	n:10000
KS ci ratio: 9.880038e-02	ci left: 1.292403e-01	ci right 1.427725e-01	k: 1359	n:10000
TLR4   10000 perm   2 sec   (4364 perm/sec)   p_kst 1.359000e-01   p_cons 4.204000e-01   p_joint 1.910000e-01

Outputting figure to mutsig2_images.part000000000175/TLR4.10_2532_10000_0.1359_0.4204_0.191.png
                gene_name: TLR4
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 10 percent done.
TIGD4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.317481e-02	ci left: 7.322943e-01	ci right 7.495652e-01	k: 7410	n:10000
KS ci ratio: 2.185929e-02	ci left: 7.543371e-01	ci right 7.711095e-01	k: 7628	n:10000
TIGD4   10000 perm   2 sec   (4710 perm/sec)   p_kst 7.628000e-01   p_cons 7.410000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TIGD4.8_1543_10000_0.7628_0.741_1.png
                gene_name: TIGD4
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
TLK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.581381e-02	ci left: 6.883905e-01	ci right 7.064943e-01	k: 6975	n:10000
Cons ci ratio: 5.722203e-02	ci left: 3.101662e-01	ci right 3.285391e-01	k: 3193	n:10000
KS ci ratio: 3.509652e-02	ci left: 5.451948e-01	ci right 5.647731e-01	k: 5550	n:10000
TLK1   10000 perm   2 sec   (4441 perm/sec)   p_kst 5.550000e-01   p_cons 3.193000e-01   p_joint 6.975000e-01

Outputting figure to mutsig2_images.part000000000175/TLK1.8_2431_10000_0.555_0.3193_0.6975.png
                gene_name: TLK1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 15 percent done.
TLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.950888e-02	ci left: 4.861529e-01	ci right 5.058495e-01	k: 4960	n:10000
KS ci ratio: 1.798050e-02	ci left: 8.186283e-01	ci right 8.335812e-01	k: 8262	n:10000
TLN2   10000 perm   3 sec   (3307 perm/sec)   p_kst 8.262000e-01   p_cons 4.960000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TLN2.8_7853_10000_0.8262_0.496_1.png
                gene_name: TLN2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 17 percent done.
TIPARP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.525785e-02	ci left: 1.670085e-01	ci right 1.819816e-01	k: 1744	n:10000
Cons ci ratio: 1.581194e-02	ci left: 8.531464e-01	ci right 8.668432e-01	k: 8601	n:10000
KS ci ratio: 1.358092e-01	ci left: 7.165494e-02	ci right 8.219310e-02	k: 768	n:10000
TIPARP   10000 perm   2 sec   (4854 perm/sec)   p_kst 7.680000e-02   p_cons 8.601000e-01   p_joint 1.744000e-01

Joint ci ratio: 6.871304e-02	ci left: 1.351201e-01	ci right 1.447848e-01	k: 2798	n:20000
Cons ci ratio: 1.126567e-02	ci left: 8.533390e-01	ci right 8.630566e-01	k: 17165	n:20000
KS ci ratio: 9.699335e-02	ci left: 7.182651e-02	ci right 7.919747e-02	k: 1509	n:20000
TIPARP   20000 perm   5 sec   (4201 perm/sec)   p_kst 7.545000e-02   p_cons 8.582500e-01   p_joint 1.399000e-01

Outputting figure to mutsig2_images.part000000000175/TIPARP.7_1994_20000_0.07545_0.85825_0.1399.png
                gene_name: TIPARP
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.075 
        ci_ks_bounds_left: 0.072 
       ci_ks_bounds_right: 0.079 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 19 percent done.
TJP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.116412e-02	ci left: 7.659773e-01	ci right 7.824627e-01	k: 7743	n:10000
KS ci ratio: 8.741968e-03	ci left: 9.483556e-01	ci right 9.567782e-01	k: 9527	n:10000
TJP1   10000 perm   3 sec   (3546 perm/sec)   p_kst 9.527000e-01   p_cons 7.743000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TJP1.7_5359_10000_0.9527_0.7743_1.png
                gene_name: TJP1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 21 percent done.
TKTL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.811184e-02	ci left: 5.041511e-01	ci right 5.238407e-01	k: 5140	n:10000
Cons ci ratio: 2.630407e-02	ci left: 6.803271e-01	ci right 6.985625e-01	k: 6895	n:10000
KS ci ratio: 5.309370e-02	ci left: 3.433291e-01	ci right 3.621567e-01	k: 3527	n:10000
TKTL2   10000 perm   2 sec   (5110 perm/sec)   p_kst 3.527000e-01   p_cons 6.895000e-01   p_joint 5.140000e-01

Outputting figure to mutsig2_images.part000000000175/TKTL2.7_1885_10000_0.3527_0.6895_0.514.png
                gene_name: TKTL2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 23 percent done.
TLE4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.785981e-02	ci left: 3.054047e-01	ci right 3.237035e-01	k: 3145	n:10000
Cons ci ratio: 6.028013e-02	ci left: 2.881535e-01	ci right 3.061648e-01	k: 2971	n:10000
KS ci ratio: 7.000510e-02	ci left: 2.302732e-01	ci right 2.470793e-01	k: 2386	n:10000
TLE4   10000 perm   2 sec   (4394 perm/sec)   p_kst 2.386000e-01   p_cons 2.971000e-01   p_joint 3.145000e-01

Outputting figure to mutsig2_images.part000000000175/TLE4.7_2402_10000_0.2386_0.2971_0.3145.png
                gene_name: TLE4
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 25 percent done.
TLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.050121e-02	ci left: 4.737614e-01	ci right 4.934481e-01	k: 4836	n:10000
Cons ci ratio: 5.889535e-02	ci left: 2.978678e-01	ci right 3.160448e-01	k: 3069	n:10000
KS ci ratio: 4.210789e-02	ci left: 4.543870e-01	ci right 4.740339e-01	k: 4642	n:10000
TLN1   10000 perm   3 sec   (3261 perm/sec)   p_kst 4.642000e-01   p_cons 3.069000e-01   p_joint 4.836000e-01

Outputting figure to mutsig2_images.part000000000175/TLN1.7_7850_10000_0.4642_0.3069_0.4836.png
                gene_name: TLN1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 27 percent done.
TLR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.243716e-02	ci left: 9.027822e-01	ci right 9.141786e-01	k: 9086	n:10000
Cons ci ratio: 1.776735e-02	ci left: 8.220852e-01	ci right 8.369224e-01	k: 8296	n:10000
KS ci ratio: 2.333176e-02	ci left: 7.296672e-01	ci right 7.469937e-01	k: 7384	n:10000
TLR7   10000 perm   2 sec   (4506 perm/sec)   p_kst 7.384000e-01   p_cons 8.296000e-01   p_joint 9.086000e-01

Outputting figure to mutsig2_images.part000000000175/TLR7.7_3158_10000_0.7384_0.8296_0.9086.png
                gene_name: TLR7
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 29 percent done.
TLR9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.524595e-02	ci left: 5.430910e-01	ci right 5.626782e-01	k: 5529	n:10000
Cons ci ratio: 5.424083e-02	ci left: 3.336927e-01	ci right 3.523989e-01	k: 3430	n:10000
KS ci ratio: 2.990962e-02	ci left: 6.224605e-01	ci right 6.414626e-01	k: 6320	n:10000
TLR9   10000 perm   2 sec   (4626 perm/sec)   p_kst 6.320000e-01   p_cons 3.430000e-01   p_joint 5.529000e-01

Outputting figure to mutsig2_images.part000000000175/TLR9.7_3107_10000_0.632_0.343_0.5529.png
                gene_name: TLR9
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 31 percent done.
TLR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.399478e-02	ci left: 8.806319e-01	ci right 8.931418e-01	k: 8870	n:10000
Cons ci ratio: 1.711004e-02	ci left: 8.326658e-01	ci right 8.471356e-01	k: 8400	n:10000
KS ci ratio: 2.376668e-02	ci left: 7.223943e-01	ci right 7.398709e-01	k: 7312	n:10000
TLR2   10000 perm   2 sec   (5098 perm/sec)   p_kst 7.312000e-01   p_cons 8.400000e-01   p_joint 8.870000e-01

Outputting figure to mutsig2_images.part000000000175/TLR2.6_2359_10000_0.7312_0.84_0.887.png
                gene_name: TLR2
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 33 percent done.
TLR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.919359e-02	ci left: 6.337201e-01	ci right 6.525965e-01	k: 6432	n:10000
KS ci ratio: 1.233967e-02	ci left: 9.041181e-01	ci right 9.154419e-01	k: 9099	n:10000
TLR8   10000 perm   2 sec   (4617 perm/sec)   p_kst 9.099000e-01   p_cons 6.432000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TLR8.6_3134_10000_0.9099_0.6432_1.png
                gene_name: TLR8
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
TIE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.952396e-02	ci left: 3.755471e-01	ci right 3.947199e-01	k: 3851	n:10000
Cons ci ratio: 1.825522e-02	ci left: 8.141562e-01	ci right 8.292559e-01	k: 8218	n:10000
KS ci ratio: 6.661620e-02	ci left: 2.485560e-01	ci right 2.657857e-01	k: 2571	n:10000
TIE1   10000 perm   2 sec   (4667 perm/sec)   p_kst 2.571000e-01   p_cons 8.218000e-01   p_joint 3.851000e-01

Outputting figure to mutsig2_images.part000000000175/TIE1.5_3509_10000_0.2571_0.8218_0.3851.png
                gene_name: TIE1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.39 

Current progress: 38 percent done.
TIMELESS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.791094e-02	ci left: 3.912746e-01	ci right 4.105831e-01	k: 4009	n:10000
Cons ci ratio: 8.754621e-02	ci left: 1.596393e-01	ci right 1.743552e-01	k: 1669	n:10000
KS ci ratio: 3.909237e-02	ci left: 4.914510e-01	ci right 5.111482e-01	k: 5013	n:10000
TIMELESS   10000 perm   2 sec   (4430 perm/sec)   p_kst 5.013000e-01   p_cons 1.669000e-01   p_joint 4.009000e-01

Outputting figure to mutsig2_images.part000000000175/TIMELESS.5_3739_10000_0.5013_0.1669_0.4009.png
                gene_name: TIMELESS
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 40 percent done.
TIMM50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.644158e-01	ci left: 3.455366e-03	ci right 6.245157e-03	k: 47	n:10000
Cons ci ratio: 1.046878e+00	ci left: 6.923711e-04	ci right 2.222014e-03	k: 13	n:10000
KS ci ratio: 6.987054e-02	ci left: 2.309646e-01	ci right 2.477875e-01	k: 2393	n:10000
TIMM50   10000 perm   2 sec   (5961 perm/sec)   p_kst 2.393000e-01   p_cons 1.300000e-03   p_joint 4.700000e-03

Joint ci ratio: 4.487885e-01	ci left: 2.950721e-03	ci right 4.698422e-03	k: 75	n:20000
Cons ci ratio: 7.034894e-01	ci left: 1.012265e-03	ci right 2.140657e-03	k: 30	n:20000
KS ci ratio: 4.952198e-02	ci left: 2.326071e-01	ci right 2.444690e-01	k: 4770	n:20000
TIMM50   20000 perm   4 sec   (5258 perm/sec)   p_kst 2.385000e-01   p_cons 1.500000e-03   p_joint 3.750000e-03

Joint ci ratio: 2.298730e-01	ci left: 8.496207e-03	ci right 1.073364e-02	k: 287	n:30000
Cons ci ratio: 5.653410e-01	ci left: 1.151348e-03	ci right 2.082796e-03	k: 47	n:30000
KS ci ratio: 4.050341e-02	ci left: 2.330906e-01	ci right 2.427602e-01	k: 7137	n:30000
TIMM50   30000 perm   6 sec   (4994 perm/sec)   p_kst 2.379000e-01   p_cons 1.566667e-03   p_joint 9.566667e-03

Joint ci ratio: 2.155539e-01	ci left: 7.315922e-03	ci right 9.106577e-03	k: 327	n:40000
Cons ci ratio: 5.015155e-01	ci left: 1.144847e-03	ci right 1.930381e-03	k: 60	n:40000
KS ci ratio: 3.483056e-02	ci left: 2.362933e-01	ci right 2.446944e-01	k: 9619	n:40000
TIMM50   40000 perm   8 sec   (4828 perm/sec)   p_kst 2.404750e-01   p_cons 1.500000e-03   p_joint 8.175000e-03

Joint ci ratio: 1.481971e-01	ci left: 1.277648e-02	ci right 1.484053e-02	k: 689	n:50000
Cons ci ratio: 4.351983e-01	ci left: 1.268898e-03	ci right 1.990949e-03	k: 80	n:50000
KS ci ratio: 3.044039e-02	ci left: 2.452541e-01	ci right 2.528551e-01	k: 12452	n:50000
TIMM50   50000 perm   11 sec   (4692 perm/sec)   p_kst 2.490400e-01   p_cons 1.600000e-03   p_joint 1.378000e-02

Joint ci ratio: 1.657728e-01	ci left: 8.467520e-03	ci right 1.001384e-02	k: 553	n:60000
Cons ci ratio: 4.083714e-01	ci left: 1.221296e-03	ci right 1.861809e-03	k: 91	n:60000
KS ci ratio: 2.784349e-02	ci left: 2.448470e-01	ci right 2.517773e-01	k: 14898	n:60000
TIMM50   60000 perm   13 sec   (4575 perm/sec)   p_kst 2.483000e-01   p_cons 1.516667e-03   p_joint 9.216667e-03

Joint ci ratio: 1.348447e-01	ci left: 1.112366e-02	ci right 1.274575e-02	k: 834	n:70000
Cons ci ratio: 3.822631e-01	ci left: 1.214093e-03	ci right 1.799908e-03	k: 104	n:70000
KS ci ratio: 2.579305e-02	ci left: 2.448895e-01	ci right 2.513028e-01	k: 17366	n:70000
TIMM50   70000 perm   16 sec   (4468 perm/sec)   p_kst 2.480857e-01   p_cons 1.485714e-03   p_joint 1.191429e-02

Joint ci ratio: 1.074144e-01	ci left: 1.549471e-02	ci right 1.726562e-02	k: 1309	n:80000
Cons ci ratio: 3.575747e-01	ci left: 1.232420e-03	ci right 1.779755e-03	k: 119	n:80000
KS ci ratio: 2.408604e-02	ci left: 2.457325e-01	ci right 2.517358e-01	k: 19898	n:80000
TIMM50   80000 perm   18 sec   (4375 perm/sec)   p_kst 2.487250e-01   p_cons 1.487500e-03   p_joint 1.636250e-02

Joint ci ratio: 1.476903e-01	ci left: 7.192794e-03	ci right 8.350382e-03	k: 698	n:90000
Cons ci ratio: 3.701726e-01	ci left: 1.014698e-03	ci right 1.485064e-03	k: 111	n:90000
KS ci ratio: 2.268115e-02	ci left: 2.463545e-01	ci right 2.520172e-01	k: 22426	n:90000
TIMM50   90000 perm   21 sec   (4273 perm/sec)   p_kst 2.491778e-01   p_cons 1.233333e-03   p_joint 7.755556e-03

Joint ci ratio: 1.495911e-01	ci left: 6.309619e-03	ci right 7.339299e-03	k: 681	n:100000
Cons ci ratio: 3.576288e-01	ci left: 9.859121e-04	ci right 1.423846e-03	k: 119	n:100000
KS ci ratio: 2.147527e-02	ci left: 2.472288e-01	ci right 2.526057e-01	k: 24991	n:100000
TIMM50   100000 perm   24 sec   (4157 perm/sec)   p_kst 2.499100e-01   p_cons 1.190000e-03   p_joint 6.810000e-03

Joint ci ratio: 1.429368e-01	ci left: 6.305307e-03	ci right 7.284605e-03	k: 746	n:110000
Cons ci ratio: 3.397000e-01	ci left: 1.004124e-03	ci right 1.422888e-03	k: 132	n:110000
KS ci ratio: 2.045811e-02	ci left: 2.476787e-01	ci right 2.528072e-01	k: 27526	n:110000
TIMM50   110000 perm   27 sec   (4058 perm/sec)   p_kst 2.502364e-01   p_cons 1.200000e-03   p_joint 6.781818e-03

Joint ci ratio: 1.418357e-01	ci left: 5.876208e-03	ci right 6.781231e-03	k: 758	n:120000
Cons ci ratio: 3.299282e-01	ci left: 9.815083e-04	ci right 1.376568e-03	k: 140	n:120000
KS ci ratio: 1.959910e-02	ci left: 2.475602e-01	ci right 2.524685e-01	k: 30001	n:120000
TIMM50   120000 perm   30 sec   (3954 perm/sec)   p_kst 2.500083e-01   p_cons 1.166667e-03   p_joint 6.316667e-03

Joint ci ratio: 1.246184e-01	ci left: 7.082889e-03	ci right 8.031583e-03	k: 981	n:130000
Cons ci ratio: 3.167255e-01	ci left: 9.908275e-04	ci right 1.370448e-03	k: 152	n:130000
KS ci ratio: 1.884226e-02	ci left: 2.474179e-01	ci right 2.521318e-01	k: 32470	n:130000
TIMM50   130000 perm   34 sec   (3876 perm/sec)   p_kst 2.497692e-01   p_cons 1.169231e-03   p_joint 7.546154e-03

Joint ci ratio: 1.149672e-01	ci left: 7.761999e-03	ci right 8.715680e-03	k: 1152	n:140000
Cons ci ratio: 2.944579e-01	ci left: 1.078363e-03	ci right 1.457065e-03	k: 176	n:140000
KS ci ratio: 1.817340e-02	ci left: 2.471637e-01	ci right 2.517038e-01	k: 34920	n:140000
TIMM50   140000 perm   37 sec   (3812 perm/sec)   p_kst 2.494286e-01   p_cons 1.257143e-03   p_joint 8.228571e-03

Joint ci ratio: 1.214258e-01	ci left: 6.480842e-03	ci right 7.325054e-03	k: 1034	n:150000
Cons ci ratio: 2.842056e-01	ci left: 1.086852e-03	ci right 1.452864e-03	k: 189	n:150000
KS ci ratio: 1.757199e-02	ci left: 2.469262e-01	ci right 2.513102e-01	k: 37367	n:150000
TIMM50   150000 perm   40 sec   (3754 perm/sec)   p_kst 2.491133e-01   p_cons 1.260000e-03   p_joint 6.893333e-03

Joint ci ratio: 1.186021e-01	ci left: 6.378888e-03	ci right 7.189140e-03	k: 1084	n:160000
Cons ci ratio: 2.791156e-01	ci left: 1.059582e-03	ci right 1.408895e-03	k: 196	n:160000
KS ci ratio: 1.700753e-02	ci left: 2.471381e-01	ci right 2.513835e-01	k: 39881	n:160000
TIMM50   160000 perm   43 sec   (3692 perm/sec)   p_kst 2.492563e-01   p_cons 1.225000e-03   p_joint 6.775000e-03

Joint ci ratio: 8.517560e-02	ci left: 1.178144e-02	ci right 1.283529e-02	k: 2091	n:170000
Cons ci ratio: 2.709845e-01	ci left: 1.062975e-03	ci right 1.401462e-03	k: 208	n:170000
KS ci ratio: 1.648486e-02	ci left: 2.475382e-01	ci right 2.516586e-01	k: 42431	n:170000
TIMM50   170000 perm   47 sec   (3634 perm/sec)   p_kst 2.495941e-01   p_cons 1.223529e-03   p_joint 1.230000e-02

Joint ci ratio: 8.664113e-02	ci left: 1.075701e-02	ci right 1.173661e-02	k: 2023	n:180000
Cons ci ratio: 2.647271e-01	ci left: 1.055746e-03	ci right 1.382881e-03	k: 218	n:180000
KS ci ratio: 1.602873e-02	ci left: 2.474025e-01	ci right 2.514056e-01	k: 44892	n:180000
TIMM50   180000 perm   50 sec   (3578 perm/sec)   p_kst 2.494000e-01   p_cons 1.211111e-03   p_joint 1.123889e-02

Joint ci ratio: 8.621611e-02	ci left: 1.029888e-02	ci right 1.123193e-02	k: 2044	n:190000
Cons ci ratio: 2.577596e-01	ci left: 1.059203e-03	ci right 1.377382e-03	k: 230	n:190000
KS ci ratio: 1.561176e-02	ci left: 2.472038e-01	ci right 2.510986e-01	k: 47338	n:190000
TIMM50   190000 perm   54 sec   (3529 perm/sec)   p_kst 2.491474e-01   p_cons 1.210526e-03   p_joint 1.075789e-02

Joint ci ratio: 8.571181e-02	ci left: 9.906162e-03	ci right 1.079812e-02	k: 2069	n:200000
Cons ci ratio: 2.189587e-01	ci left: 1.424870e-03	ci right 1.779826e-03	k: 319	n:200000
KS ci ratio: 1.520987e-02	ci left: 2.474152e-01	ci right 2.512121e-01	k: 49862	n:200000
TIMM50   200000 perm   58 sec   (3478 perm/sec)   p_kst 2.493100e-01   p_cons 1.595000e-03   p_joint 1.034500e-02

Joint ci ratio: 8.544182e-02	ci left: 9.499595e-03	ci right 1.035211e-02	k: 2083	n:210000
Cons ci ratio: 2.143217e-01	ci left: 1.420069e-03	ci right 1.765352e-03	k: 333	n:210000
KS ci ratio: 1.485108e-02	ci left: 2.472656e-01	ci right 2.509699e-01	k: 52314	n:210000
TIMM50   210000 perm   61 sec   (3427 perm/sec)   p_kst 2.491143e-01   p_cons 1.585714e-03   p_joint 9.919048e-03

Joint ci ratio: 8.474576e-02	ci left: 9.223445e-03	ci right 1.004410e-02	k: 2118	n:220000
Cons ci ratio: 2.096658e-01	ci left: 1.420082e-03	ci right 1.756905e-03	k: 348	n:220000
KS ci ratio: 1.452008e-02	ci left: 2.470399e-01	ci right 2.506576e-01	k: 54746	n:220000
TIMM50   220000 perm   65 sec   (3379 perm/sec)   p_kst 2.488455e-01   p_cons 1.581818e-03   p_joint 9.627273e-03

Joint ci ratio: 8.440261e-02	ci left: 8.898968e-03	ci right 9.687386e-03	k: 2136	n:230000
Cons ci ratio: 2.064399e-01	ci left: 1.403673e-03	ci right 1.730834e-03	k: 359	n:230000
KS ci ratio: 1.420777e-02	ci left: 2.468997e-01	ci right 2.504370e-01	k: 57193	n:230000
TIMM50   230000 perm   69 sec   (3330 perm/sec)   p_kst 2.486652e-01   p_cons 1.560870e-03   p_joint 9.286957e-03

Joint ci ratio: 7.833951e-02	ci left: 9.920332e-03	ci right 1.073323e-02	k: 2477	n:240000
Cons ci ratio: 2.014638e-01	ci left: 1.416357e-03	ci right 1.737539e-03	k: 377	n:240000
KS ci ratio: 1.389866e-02	ci left: 2.472044e-01	ci right 2.506684e-01	k: 59744	n:240000
TIMM50   240000 perm   73 sec   (3284 perm/sec)   p_kst 2.489333e-01   p_cons 1.570833e-03   p_joint 1.032083e-02

Joint ci ratio: 7.694142e-02	ci left: 9.880443e-03	ci right 1.067497e-02	k: 2568	n:250000
Cons ci ratio: 1.963350e-01	ci left: 1.435721e-03	ci right 1.752014e-03	k: 397	n:250000
KS ci ratio: 1.361864e-02	ci left: 2.472180e-01	ci right 2.506118e-01	k: 62228	n:250000
TIMM50   250000 perm   77 sec   (3237 perm/sec)   p_kst 2.489120e-01   p_cons 1.588000e-03   p_joint 1.027200e-02

Joint ci ratio: 7.567311e-02	ci left: 9.828646e-03	ci right 1.060541e-02	k: 2655	n:260000
Cons ci ratio: 1.929711e-01	ci left: 1.431723e-03	ci right 1.741097e-03	k: 411	n:260000
KS ci ratio: 1.335131e-02	ci left: 2.473310e-01	ci right 2.506592e-01	k: 64738	n:260000
TIMM50   260000 perm   82 sec   (3184 perm/sec)   p_kst 2.489923e-01   p_cons 1.580769e-03   p_joint 1.021154e-02

Joint ci ratio: 7.509025e-02	ci left: 9.617206e-03	ci right 1.037115e-02	k: 2697	n:270000
Cons ci ratio: 1.886686e-01	ci left: 1.445706e-03	ci right 1.750338e-03	k: 430	n:270000
KS ci ratio: 1.310978e-02	ci left: 2.471332e-01	ci right 2.503981e-01	k: 67166	n:270000
TIMM50   270000 perm   86 sec   (3132 perm/sec)   p_kst 2.487630e-01   p_cons 1.592593e-03   p_joint 9.988889e-03

Joint ci ratio: 7.401726e-02	ci left: 9.550605e-03	ci right 1.028816e-02	k: 2776	n:280000
Cons ci ratio: 1.856778e-01	ci left: 1.441730e-03	ci right 1.740167e-03	k: 444	n:280000
KS ci ratio: 1.288286e-02	ci left: 2.468930e-01	ci right 2.500979e-01	k: 69578	n:280000
TIMM50   280000 perm   91 sec   (3092 perm/sec)   p_kst 2.484929e-01   p_cons 1.585714e-03   p_joint 9.914286e-03

Joint ci ratio: 7.368256e-02	ci left: 9.309230e-03	ci right 1.002476e-02	k: 2802	n:290000
Cons ci ratio: 1.834261e-01	ci left: 1.428193e-03	ci right 1.719844e-03	k: 455	n:290000
KS ci ratio: 1.266651e-02	ci left: 2.466940e-01	ci right 2.498421e-01	k: 71997	n:290000
TIMM50   290000 perm   95 sec   (3046 perm/sec)   p_kst 2.482655e-01   p_cons 1.568966e-03   p_joint 9.662069e-03

Joint ci ratio: 7.549608e-02	ci left: 8.570276e-03	ci right 9.245929e-03	k: 2671	n:300000
Cons ci ratio: 1.810604e-01	ci left: 1.418762e-03	ci right 1.704339e-03	k: 467	n:300000
KS ci ratio: 1.245335e-02	ci left: 2.467282e-01	ci right 2.498233e-01	k: 74482	n:300000
TIMM50   300000 perm   100 sec   (3010 perm/sec)   p_kst 2.482733e-01   p_cons 1.556667e-03   p_joint 8.903333e-03

Joint ci ratio: 7.523767e-02	ci left: 8.353916e-03	ci right 9.010157e-03	k: 2690	n:310000
Cons ci ratio: 1.769473e-01	ci left: 1.440785e-03	ci right 1.723503e-03	k: 489	n:310000
KS ci ratio: 1.224966e-02	ci left: 2.467896e-01	ci right 2.498345e-01	k: 76976	n:310000
TIMM50   310000 perm   104 sec   (2970 perm/sec)   p_kst 2.483097e-01   p_cons 1.577419e-03   p_joint 8.677419e-03

Joint ci ratio: 7.529030e-02	ci left: 8.083615e-03	ci right 8.719086e-03	k: 2687	n:320000
Cons ci ratio: 1.742997e-01	ci left: 1.440575e-03	ci right 1.718577e-03	k: 504	n:320000
KS ci ratio: 1.205978e-02	ci left: 2.467196e-01	ci right 2.497162e-01	k: 79429	n:320000
TIMM50   320000 perm   109 sec   (2932 perm/sec)   p_kst 2.482156e-01   p_cons 1.575000e-03   p_joint 8.396875e-03

Joint ci ratio: 6.871065e-02	ci left: 9.430952e-03	ci right 1.010497e-02	k: 3222	n:330000
Cons ci ratio: 1.717676e-01	ci left: 1.440407e-03	ci right 1.713920e-03	k: 519	n:330000
KS ci ratio: 1.187056e-02	ci left: 2.469023e-01	ci right 2.498536e-01	k: 81964	n:330000
TIMM50   330000 perm   114 sec   (2891 perm/sec)   p_kst 2.483758e-01   p_cons 1.572727e-03   p_joint 9.763636e-03

Joint ci ratio: 7.356363e-02	ci left: 7.977557e-03	ci right 8.589692e-03	k: 2815	n:340000
Cons ci ratio: 1.695015e-01	ci left: 1.437460e-03	ci right 1.706444e-03	k: 533	n:340000
KS ci ratio: 1.181812e-02	ci left: 2.430326e-01	ci right 2.459247e-01	k: 83122	n:340000
TIMM50   340000 perm   119 sec   (2849 perm/sec)   p_kst 2.444765e-01   p_cons 1.567647e-03   p_joint 8.279412e-03

Joint ci ratio: 7.276912e-02	ci left: 7.923520e-03	ci right 8.524665e-03	k: 2877	n:350000
Cons ci ratio: 1.673227e-01	ci left: 1.434703e-03	ci right 1.699373e-03	k: 547	n:350000
KS ci ratio: 1.164661e-02	ci left: 2.430996e-01	ci right 2.459503e-01	k: 85583	n:350000
TIMM50   350000 perm   125 sec   (2811 perm/sec)   p_kst 2.445229e-01   p_cons 1.562857e-03   p_joint 8.220000e-03

Joint ci ratio: 7.211114e-02	ci left: 7.847967e-03	ci right 8.437770e-03	k: 2930	n:360000
Cons ci ratio: 1.653733e-01	ci left: 1.429458e-03	ci right 1.689782e-03	k: 560	n:360000
KS ci ratio: 1.148459e-02	ci left: 2.430912e-01	ci right 2.459018e-01	k: 88018	n:360000
TIMM50   360000 perm   130 sec   (2773 perm/sec)   p_kst 2.444944e-01   p_cons 1.555556e-03   p_joint 8.138889e-03

Joint ci ratio: 7.086268e-02	ci left: 7.911925e-03	ci right 8.495817e-03	k: 3034	n:370000
Cons ci ratio: 1.625010e-01	ci left: 1.442661e-03	ci right 1.700381e-03	k: 580	n:370000
KS ci ratio: 1.132295e-02	ci left: 2.432857e-01	ci right 2.460588e-01	k: 90528	n:370000
TIMM50   370000 perm   135 sec   (2734 perm/sec)   p_kst 2.446703e-01   p_cons 1.567568e-03   p_joint 8.200000e-03

Joint ci ratio: 6.476022e-02	ci left: 9.240614e-03	ci right 9.861636e-03	k: 3628	n:380000
Cons ci ratio: 1.599067e-01	ci left: 1.452680e-03	ci right 1.707649e-03	k: 599	n:380000
KS ci ratio: 1.117120e-02	ci left: 2.433626e-01	ci right 2.460991e-01	k: 92997	n:380000
TIMM50   380000 perm   141 sec   (2698 perm/sec)   p_kst 2.447289e-01   p_cons 1.576316e-03   p_joint 9.547368e-03

Joint ci ratio: 6.432244e-02	ci left: 9.129795e-03	ci right 9.739066e-03	k: 3678	n:390000
Cons ci ratio: 1.576882e-01	ci left: 1.457290e-03	ci right 1.709183e-03	k: 616	n:390000
KS ci ratio: 1.102646e-02	ci left: 2.434000e-01	ci right 2.461012e-01	k: 95452	n:390000
TIMM50   390000 perm   146 sec   (2667 perm/sec)   p_kst 2.447487e-01   p_cons 1.579487e-03   p_joint 9.430769e-03

Joint ci ratio: 6.338062e-02	ci left: 9.172165e-03	ci right 9.774973e-03	k: 3788	n:400000
Cons ci ratio: 1.556825e-01	ci left: 1.459289e-03	ci right 1.708020e-03	k: 632	n:400000
KS ci ratio: 1.089214e-02	ci left: 2.432685e-01	ci right 2.459352e-01	k: 97840	n:400000
TIMM50   400000 perm   152 sec   (2638 perm/sec)   p_kst 2.446000e-01   p_cons 1.580000e-03   p_joint 9.470000e-03

Joint ci ratio: 6.621553e-02	ci left: 8.194865e-03	ci right 8.758456e-03	k: 3474	n:410000
Cons ci ratio: 1.543481e-01	ci left: 1.449485e-03	ci right 1.694231e-03	k: 643	n:410000
KS ci ratio: 1.075750e-02	ci left: 2.433189e-01	ci right 2.459530e-01	k: 100300	n:410000
TIMM50   410000 perm   157 sec   (2610 perm/sec)   p_kst 2.446341e-01   p_cons 1.568293e-03   p_joint 8.473171e-03

Joint ci ratio: 6.548520e-02	ci left: 8.182404e-03	ci right 8.738695e-03	k: 3552	n:420000
Cons ci ratio: 1.520050e-01	ci left: 1.460768e-03	ci right 1.703334e-03	k: 663	n:420000
KS ci ratio: 1.062978e-02	ci left: 2.432958e-01	ci right 2.458982e-01	k: 102730	n:420000
TIMM50   420000 perm   163 sec   (2582 perm/sec)   p_kst 2.445952e-01   p_cons 1.578571e-03   p_joint 8.457143e-03

Joint ci ratio: 6.184788e-02	ci left: 8.969450e-03	ci right 9.544168e-03	k: 3979	n:430000
Cons ci ratio: 1.503168e-01	ci left: 1.460361e-03	ci right 1.699924e-03	k: 678	n:430000
KS ci ratio: 1.050314e-02	ci left: 2.433924e-01	ci right 2.459645e-01	k: 105211	n:430000
TIMM50   430000 perm   168 sec   (2555 perm/sec)   p_kst 2.446767e-01   p_cons 1.576744e-03   p_joint 9.253488e-03

Joint ci ratio: 6.227423e-02	ci left: 8.646969e-03	ci right 9.204981e-03	k: 3926	n:440000
Cons ci ratio: 1.485764e-01	ci left: 1.462175e-03	ci right 1.699012e-03	k: 694	n:440000
KS ci ratio: 1.038283e-02	ci left: 2.434167e-01	ci right 2.459594e-01	k: 107662	n:440000
TIMM50   440000 perm   174 sec   (2529 perm/sec)   p_kst 2.446864e-01   p_cons 1.577273e-03   p_joint 8.922727e-03

Joint ci ratio: 6.206558e-02	ci left: 8.513864e-03	ci right 9.061378e-03	k: 3953	n:450000
Cons ci ratio: 1.469987e-01	ci left: 1.461783e-03	ci right 1.695821e-03	k: 709	n:450000
KS ci ratio: 1.026829e-02	ci left: 2.433779e-01	ci right 2.458921e-01	k: 110085	n:450000
TIMM50   450000 perm   180 sec   (2502 perm/sec)   p_kst 2.446333e-01   p_cons 1.575556e-03   p_joint 8.784444e-03

Joint ci ratio: 6.475159e-02	ci left: 7.648320e-03	ci right 8.162255e-03	k: 3635	n:460000
Cons ci ratio: 1.451697e-01	ci left: 1.467705e-03	ci right 1.699515e-03	k: 727	n:460000
KS ci ratio: 9.923845e-03	ci left: 2.520263e-01	ci right 2.545420e-01	k: 116510	n:460000
TIMM50   460000 perm   186 sec   (2477 perm/sec)   p_kst 2.532826e-01   p_cons 1.580435e-03   p_joint 7.902174e-03

Joint ci ratio: 6.439220e-02	ci left: 7.571406e-03	ci right 8.077243e-03	k: 3676	n:470000
Cons ci ratio: 1.436002e-01	ci left: 1.469290e-03	ci right 1.698626e-03	k: 743	n:470000
KS ci ratio: 9.819850e-03	ci left: 2.519573e-01	ci right 2.544458e-01	k: 119004	n:470000
TIMM50   470000 perm   192 sec   (2452 perm/sec)   p_kst 2.532000e-01   p_cons 1.580851e-03   p_joint 7.821277e-03

Joint ci ratio: 6.401266e-02	ci left: 7.503855e-03	ci right 8.002115e-03	k: 3720	n:480000
Cons ci ratio: 1.419871e-01	ci left: 1.472832e-03	ci right 1.699919e-03	k: 760	n:480000
KS ci ratio: 9.713598e-03	ci left: 2.521034e-01	ci right 2.545662e-01	k: 121600	n:480000
TIMM50   480000 perm   198 sec   (2428 perm/sec)   p_kst 2.533333e-01   p_cons 1.583333e-03   p_joint 7.750000e-03

Joint ci ratio: 5.812781e-02	ci left: 8.928527e-03	ci right 9.465056e-03	k: 4505	n:490000
Cons ci ratio: 1.406990e-01	ci left: 1.470335e-03	ci right 1.694808e-03	k: 774	n:490000
KS ci ratio: 9.615076e-03	ci left: 2.520726e-01	ci right 2.545100e-01	k: 124112	n:490000
TIMM50   490000 perm   204 sec   (2404 perm/sec)   p_kst 2.532898e-01   p_cons 1.579592e-03   p_joint 9.193878e-03

Joint ci ratio: 6.093109e-02	ci left: 7.959765e-03	ci right 8.461958e-03	k: 4104	n:500000
Cons ci ratio: 1.396228e-01	ci left: 1.464086e-03	ci right 1.685754e-03	k: 786	n:500000
KS ci ratio: 9.522464e-03	ci left: 2.519252e-01	ci right 2.543376e-01	k: 126565	n:500000
TIMM50   500000 perm   210 sec   (2377 perm/sec)   p_kst 2.531300e-01   p_cons 1.572000e-03   p_joint 8.208000e-03

Joint ci ratio: 6.479483e-02	ci left: 6.894540e-03	ci right 7.358144e-03	k: 3633	n:510000
Cons ci ratio: 1.562041e-01	ci left: 1.136989e-03	ci right 1.331494e-03	k: 628	n:510000
KS ci ratio: 9.425776e-03	ci left: 2.520520e-01	ci right 2.544410e-01	k: 129155	n:510000
TIMM50   510000 perm   217 sec   (2351 perm/sec)   p_kst 2.532451e-01   p_cons 1.231373e-03   p_joint 7.123529e-03

Joint ci ratio: 6.457599e-02	ci left: 6.809243e-03	ci right 7.265506e-03	k: 3658	n:520000
Cons ci ratio: 1.533050e-01	ci left: 1.159491e-03	ci right 1.353826e-03	k: 652	n:520000
KS ci ratio: 9.332448e-03	ci left: 2.521548e-01	ci right 2.545210e-01	k: 131735	n:520000
TIMM50   520000 perm   224 sec   (2327 perm/sec)   p_kst 2.533365e-01   p_cons 1.253846e-03   p_joint 7.034615e-03

Joint ci ratio: 6.419280e-02	ci left: 6.762444e-03	ci right 7.212782e-03	k: 3702	n:530000
Cons ci ratio: 1.523751e-01	ci left: 1.152131e-03	ci right 1.343954e-03	k: 660	n:530000
KS ci ratio: 9.243590e-03	ci left: 2.521823e-01	ci right 2.545260e-01	k: 134277	n:530000
TIMM50   530000 perm   230 sec   (2302 perm/sec)   p_kst 2.533528e-01   p_cons 1.245283e-03   p_joint 6.984906e-03

Joint ci ratio: 6.377350e-02	ci left: 6.726498e-03	ci right 7.171409e-03	k: 3751	n:540000
Cons ci ratio: 1.511230e-01	ci left: 1.150392e-03	ci right 1.340210e-03	k: 671	n:540000
KS ci ratio: 9.158298e-03	ci left: 2.521645e-01	ci right 2.544863e-01	k: 136795	n:540000
TIMM50   540000 perm   237 sec   (2277 perm/sec)   p_kst 2.533241e-01   p_cons 1.242593e-03   p_joint 6.946296e-03

Joint ci ratio: 6.315349e-02	ci left: 6.736610e-03	ci right 7.177699e-03	k: 3825	n:550000
Cons ci ratio: 1.503428e-01	ci left: 1.141722e-03	ci right 1.329050e-03	k: 678	n:550000
KS ci ratio: 9.075848e-03	ci left: 2.521256e-01	ci right 2.544261e-01	k: 139301	n:550000
TIMM50   550000 perm   244 sec   (2255 perm/sec)   p_kst 2.532745e-01   p_cons 1.232727e-03   p_joint 6.954545e-03

Joint ci ratio: 6.304968e-02	ci left: 6.639151e-03	ci right 7.073118e-03	k: 3838	n:560000
Cons ci ratio: 1.483880e-01	ci left: 1.152277e-03	ci right 1.338659e-03	k: 696	n:560000
KS ci ratio: 8.994311e-03	ci left: 2.521417e-01	ci right 2.544216e-01	k: 141837	n:560000
TIMM50   560000 perm   251 sec   (2235 perm/sec)   p_kst 2.532804e-01   p_cons 1.242857e-03   p_joint 6.853571e-03

Joint ci ratio: 6.095458e-02	ci left: 6.983872e-03	ci right 7.424668e-03	k: 4105	n:570000
Cons ci ratio: 1.464051e-01	ci left: 1.164166e-03	ci right 1.349735e-03	k: 715	n:570000
KS ci ratio: 8.916339e-03	ci left: 2.520978e-01	ci right 2.543574e-01	k: 144339	n:570000
TIMM50   570000 perm   257 sec   (2215 perm/sec)   p_kst 2.532263e-01   p_cons 1.254386e-03   p_joint 7.201754e-03

Joint ci ratio: 6.039069e-02	ci left: 6.994206e-03	ci right 7.431428e-03	k: 4182	n:580000
Cons ci ratio: 1.451935e-01	ci left: 1.164029e-03	ci right 1.347908e-03	k: 727	n:580000
KS ci ratio: 8.838184e-03	ci left: 2.521484e-01	ci right 2.543885e-01	k: 146895	n:580000
TIMM50   580000 perm   264 sec   (2195 perm/sec)   p_kst 2.532672e-01   p_cons 1.253448e-03   p_joint 7.210345e-03

Joint ci ratio: 5.910592e-02	ci left: 7.181216e-03	ci right 7.620252e-03	k: 4365	n:590000
Cons ci ratio: 1.438171e-01	ci left: 1.167170e-03	ci right 1.349648e-03	k: 741	n:590000
KS ci ratio: 8.762285e-03	ci left: 2.521873e-01	ci right 2.544084e-01	k: 149445	n:590000
TIMM50   590000 perm   271 sec   (2175 perm/sec)   p_kst 2.532966e-01   p_cons 1.255932e-03   p_joint 7.398305e-03

Joint ci ratio: 5.885215e-02	ci left: 7.123922e-03	ci right 7.557522e-03	k: 4403	n:600000
Cons ci ratio: 1.423848e-01	ci left: 1.171823e-03	ci right 1.353048e-03	k: 756	n:600000
KS ci ratio: 8.690337e-03	ci left: 2.521367e-01	ci right 2.543390e-01	k: 151942	n:600000
TIMM50   600000 perm   278 sec   (2156 perm/sec)   p_kst 2.532367e-01   p_cons 1.260000e-03   p_joint 7.338333e-03

Joint ci ratio: 5.825253e-02	ci left: 7.154136e-03	ci right 7.584989e-03	k: 4494	n:610000
Cons ci ratio: 1.413616e-01	ci left: 1.170005e-03	ci right 1.349539e-03	k: 767	n:610000
KS ci ratio: 8.616061e-03	ci left: 2.522663e-01	ci right 2.544508e-01	k: 154548	n:610000
TIMM50   610000 perm   286 sec   (2132 perm/sec)   p_kst 2.533574e-01   p_cons 1.257377e-03   p_joint 7.367213e-03

Joint ci ratio: 5.796447e-02	ci left: 7.110268e-03	ci right 7.536291e-03	k: 4539	n:620000
Cons ci ratio: 1.404505e-01	ci left: 1.166694e-03	ci right 1.344470e-03	k: 777	n:620000
KS ci ratio: 8.544422e-03	ci left: 2.523579e-01	ci right 2.545250e-01	k: 157133	n:620000
TIMM50   620000 perm   294 sec   (2109 perm/sec)   p_kst 2.534403e-01   p_cons 1.253226e-03   p_joint 7.320968e-03

Joint ci ratio: 5.766795e-02	ci left: 7.070927e-03	ci right 7.492353e-03	k: 4586	n:630000
Cons ci ratio: 1.389402e-01	ci left: 1.174217e-03	ci right 1.351055e-03	k: 794	n:630000
KS ci ratio: 8.478486e-03	ci left: 2.522708e-01	ci right 2.544203e-01	k: 159607	n:630000
TIMM50   630000 perm   302 sec   (2088 perm/sec)   p_kst 2.533444e-01   p_cons 1.260317e-03   p_joint 7.279365e-03

Joint ci ratio: 5.808724e-02	ci left: 6.860330e-03	ci right 7.272276e-03	k: 4521	n:640000
Cons ci ratio: 1.375625e-01	ci left: 1.180005e-03	ci right 1.355809e-03	k: 810	n:640000
KS ci ratio: 8.410753e-03	ci left: 2.523347e-01	ci right 2.544675e-01	k: 162176	n:640000
TIMM50   640000 perm   309 sec   (2069 perm/sec)   p_kst 2.534000e-01   p_cons 1.265625e-03   p_joint 7.064063e-03

Joint ci ratio: 5.810336e-02	ci left: 6.751743e-03	ci right 7.157285e-03	k: 4519	n:650000
Cons ci ratio: 1.369732e-01	ci left: 1.172250e-03	ci right 1.346090e-03	k: 817	n:650000
KS ci ratio: 8.346924e-03	ci left: 2.522922e-01	ci right 2.544084e-01	k: 164677	n:650000
TIMM50   650000 perm   317 sec   (2051 perm/sec)   p_kst 2.533492e-01   p_cons 1.256923e-03   p_joint 6.952308e-03

Joint ci ratio: 5.782373e-02	ci left: 6.715141e-03	ci right 7.116478e-03	k: 4563	n:660000
Cons ci ratio: 1.359795e-01	ci left: 1.172050e-03	ci right 1.344497e-03	k: 829	n:660000
KS ci ratio: 8.283797e-03	ci left: 2.522844e-01	ci right 2.543844e-01	k: 167200	n:660000
TIMM50   660000 perm   325 sec   (2032 perm/sec)   p_kst 2.533333e-01   p_cons 1.256061e-03   p_joint 6.913636e-03

Joint ci ratio: 5.763000e-02	ci left: 6.660510e-03	ci right 7.057205e-03	k: 4594	n:670000
Cons ci ratio: 1.349269e-01	ci left: 1.173302e-03	ci right 1.344490e-03	k: 842	n:670000
KS ci ratio: 8.222698e-03	ci left: 2.522485e-01	ci right 2.543327e-01	k: 169704	n:670000
TIMM50   670000 perm   333 sec   (2014 perm/sec)   p_kst 2.532896e-01   p_cons 1.256716e-03   p_joint 6.856716e-03

Joint ci ratio: 5.751961e-02	ci left: 6.588644e-03	ci right 6.980281e-03	k: 4612	n:680000
Cons ci ratio: 1.340553e-01	ci left: 1.171680e-03	ci right 1.341438e-03	k: 853	n:680000
KS ci ratio: 8.160804e-03	ci left: 2.523122e-01	ci right 2.543811e-01	k: 172275	n:680000
TIMM50   680000 perm   341 sec   (1997 perm/sec)   p_kst 2.533456e-01   p_cons 1.254412e-03   p_joint 6.782353e-03

Joint ci ratio: 5.706961e-02	ci left: 6.597439e-03	ci right 6.986430e-03	k: 4685	n:690000
Cons ci ratio: 1.332003e-01	ci left: 1.170108e-03	ci right 1.338472e-03	k: 864	n:690000
KS ci ratio: 8.101777e-03	ci left: 2.523045e-01	ci right 2.543584e-01	k: 174798	n:690000
TIMM50   690000 perm   348 sec   (1980 perm/sec)   p_kst 2.533304e-01   p_cons 1.252174e-03   p_joint 6.789855e-03

Joint ci ratio: 5.722010e-02	ci left: 6.469382e-03	ci right 6.851861e-03	k: 4661	n:700000
Cons ci ratio: 1.319849e-01	ci left: 1.175491e-03	ci right 1.342966e-03	k: 880	n:700000
KS ci ratio: 8.045410e-03	ci left: 2.522316e-01	ci right 2.542705e-01	k: 177275	n:700000
TIMM50   700000 perm   356 sec   (1964 perm/sec)   p_kst 2.532500e-01   p_cons 1.257143e-03   p_joint 6.658571e-03

Joint ci ratio: 5.681934e-02	ci left: 6.469896e-03	ci right 6.849639e-03	k: 4727	n:710000
Cons ci ratio: 1.308753e-01	ci left: 1.179367e-03	ci right 1.345871e-03	k: 895	n:710000
KS ci ratio: 7.988894e-03	ci left: 2.522226e-01	ci right 2.542470e-01	k: 179796	n:710000
TIMM50   710000 perm   365 sec   (1946 perm/sec)   p_kst 2.532338e-01   p_cons 1.260563e-03   p_joint 6.657746e-03

Joint ci ratio: 5.635592e-02	ci left: 6.486838e-03	ci right 6.864369e-03	k: 4805	n:720000
Cons ci ratio: 1.297218e-01	ci left: 1.184485e-03	ci right 1.350125e-03	k: 911	n:720000
KS ci ratio: 7.935505e-03	ci left: 2.521210e-01	ci right 2.541310e-01	k: 182250	n:720000
TIMM50   720000 perm   373 sec   (1929 perm/sec)   p_kst 2.531250e-01   p_cons 1.265278e-03   p_joint 6.673611e-03

Joint ci ratio: 5.600187e-02	ci left: 6.480365e-03	ci right 6.855073e-03	k: 4866	n:730000
Cons ci ratio: 1.289467e-01	ci left: 1.182840e-03	ci right 1.347186e-03	k: 922	n:730000
KS ci ratio: 7.881515e-03	ci left: 2.521015e-01	ci right 2.540977e-01	k: 184762	n:730000
TIMM50   730000 perm   382 sec   (1913 perm/sec)   p_kst 2.530986e-01   p_cons 1.263014e-03   p_joint 6.665753e-03

Joint ci ratio: 5.569424e-02	ci left: 6.464745e-03	ci right 6.836430e-03	k: 4920	n:740000
Cons ci ratio: 1.281166e-01	ci left: 1.182551e-03	ci right 1.345718e-03	k: 934	n:740000
KS ci ratio: 7.826849e-03	ci left: 2.521677e-01	ci right 2.541504e-01	k: 187337	n:740000
TIMM50   740000 perm   390 sec   (1898 perm/sec)   p_kst 2.531581e-01   p_cons 1.262162e-03   p_joint 6.648649e-03

Joint ci ratio: 5.535243e-02	ci left: 6.458752e-03	ci right 6.827741e-03	k: 4981	n:750000
Cons ci ratio: 1.275724e-01	ci left: 1.177109e-03	ci right 1.338783e-03	k: 942	n:750000
KS ci ratio: 7.773086e-03	ci left: 2.522428e-01	ci right 2.542124e-01	k: 189920	n:750000
TIMM50   750000 perm   398 sec   (1884 perm/sec)   p_kst 2.532267e-01   p_cons 1.256000e-03   p_joint 6.641333e-03

Joint ci ratio: 5.497296e-02	ci left: 6.463306e-03	ci right 6.829943e-03	k: 5050	n:760000
Cons ci ratio: 1.265695e-01	ci left: 1.180730e-03	ci right 1.341531e-03	k: 957	n:760000
KS ci ratio: 7.723344e-03	ci left: 2.521727e-01	ci right 2.541292e-01	k: 192394	n:760000
TIMM50   760000 perm   406 sec   (1870 perm/sec)   p_kst 2.531500e-01   p_cons 1.259211e-03   p_joint 6.644737e-03

Joint ci ratio: 5.464418e-02	ci left: 6.457501e-03	ci right 6.821550e-03	k: 5111	n:770000
Cons ci ratio: 1.254609e-01	ci left: 1.186778e-03	ci right 1.346882e-03	k: 974	n:770000
KS ci ratio: 7.673859e-03	ci left: 2.521382e-01	ci right 2.540818e-01	k: 194894	n:770000
TIMM50   770000 perm   415 sec   (1856 perm/sec)   p_kst 2.531091e-01   p_cons 1.264935e-03   p_joint 6.637662e-03

Joint ci ratio: 5.428427e-02	ci left: 6.460705e-03	ci right 6.822460e-03	k: 5179	n:780000
Cons ci ratio: 1.246959e-01	ci left: 1.186466e-03	ci right 1.345480e-03	k: 986	n:780000
KS ci ratio: 7.625288e-03	ci left: 2.521059e-01	ci right 2.540369e-01	k: 197395	n:780000
TIMM50   780000 perm   423 sec   (1842 perm/sec)   p_kst 2.530705e-01   p_cons 1.264103e-03   p_joint 6.639744e-03

Joint ci ratio: 5.385911e-02	ci left: 6.481320e-03	ci right 6.841299e-03	k: 5261	n:790000
Cons ci ratio: 1.237589e-01	ci left: 1.189845e-03	ci right 1.348025e-03	k: 1001	n:790000
KS ci ratio: 7.576612e-03	ci left: 2.521251e-01	ci right 2.540438e-01	k: 199936	n:790000
TIMM50   790000 perm   432 sec   (1828 perm/sec)   p_kst 2.530835e-01   p_cons 1.267089e-03   p_joint 6.659494e-03

Joint ci ratio: 5.382534e-02	ci left: 6.408930e-03	ci right 6.764657e-03	k: 5268	n:800000
Cons ci ratio: 1.227822e-01	ci left: 1.194356e-03	ci right 1.351791e-03	k: 1017	n:800000
KS ci ratio: 7.529927e-03	ci left: 2.520901e-01	ci right 2.539967e-01	k: 202434	n:800000
TIMM50   800000 perm   441 sec   (1814 perm/sec)   p_kst 2.530425e-01   p_cons 1.271250e-03   p_joint 6.585000e-03

Joint ci ratio: 5.362813e-02	ci left: 6.377306e-03	ci right 6.729941e-03	k: 5307	n:810000
Cons ci ratio: 1.218283e-01	ci left: 1.198759e-03	ci right 1.355459e-03	k: 1033	n:810000
KS ci ratio: 7.483043e-03	ci left: 2.521090e-01	ci right 2.540039e-01	k: 204975	n:810000
TIMM50   810000 perm   451 sec   (1797 perm/sec)   p_kst 2.530556e-01   p_cons 1.275309e-03   p_joint 6.551852e-03

Joint ci ratio: 5.211972e-02	ci left: 6.672611e-03	ci right 7.030886e-03	k: 5617	n:820000
Cons ci ratio: 1.208963e-01	ci left: 1.203060e-03	ci right 1.359033e-03	k: 1049	n:820000
KS ci ratio: 7.436545e-03	ci left: 2.521519e-01	ci right 2.540352e-01	k: 207536	n:820000
TIMM50   820000 perm   460 sec   (1782 perm/sec)   p_kst 2.530927e-01   p_cons 1.279268e-03   p_joint 6.850000e-03

Joint ci ratio: 5.020921e-02	ci left: 7.107272e-03	ci right 7.474493e-03	k: 6050	n:830000
Cons ci ratio: 1.199290e-01	ci left: 1.208431e-03	ci right 1.363758e-03	k: 1066	n:830000
KS ci ratio: 7.391845e-03	ci left: 2.521456e-01	ci right 2.540175e-01	k: 210057	n:830000
TIMM50   830000 perm   470 sec   (1767 perm/sec)   p_kst 2.530807e-01   p_cons 1.284337e-03   p_joint 7.289157e-03

Joint ci ratio: 5.019887e-02	ci left: 7.026181e-03	ci right 7.389135e-03	k: 6053	n:840000
Cons ci ratio: 1.195380e-01	ci left: 1.202128e-03	ci right 1.356106e-03	k: 1073	n:840000
KS ci ratio: 7.347618e-03	ci left: 2.521562e-01	ci right 2.540169e-01	k: 212592	n:840000
TIMM50   840000 perm   479 sec   (1753 perm/sec)   p_kst 2.530857e-01   p_cons 1.277381e-03   p_joint 7.205952e-03

Joint ci ratio: 5.005135e-02	ci left: 6.985338e-03	ci right 7.345091e-03	k: 6089	n:850000
Cons ci ratio: 1.188758e-01	ci left: 1.201682e-03	ci right 1.354690e-03	k: 1085	n:850000
KS ci ratio: 7.306266e-03	ci left: 2.520584e-01	ci right 2.539079e-01	k: 215035	n:850000
TIMM50   850000 perm   488 sec   (1740 perm/sec)   p_kst 2.529824e-01   p_cons 1.276471e-03   p_joint 7.163529e-03

Joint ci ratio: 5.111224e-02	ci left: 6.619356e-03	ci right 6.967699e-03	k: 5841	n:860000
Cons ci ratio: 1.180630e-01	ci left: 1.204634e-03	ci right 1.356896e-03	k: 1100	n:860000
KS ci ratio: 7.265202e-03	ci left: 2.519839e-01	ci right 2.538224e-01	k: 217496	n:860000
TIMM50   860000 perm   498 sec   (1728 perm/sec)   p_kst 2.529023e-01   p_cons 1.279070e-03   p_joint 6.791860e-03

Joint ci ratio: 5.088240e-02	ci left: 6.603413e-03	ci right 6.949308e-03	k: 5894	n:870000
Cons ci ratio: 1.174778e-01	ci left: 1.203059e-03	ci right 1.354316e-03	k: 1111	n:870000
KS ci ratio: 7.223878e-03	ci left: 2.519605e-01	ci right 2.537883e-01	k: 220000	n:870000
TIMM50   870000 perm   508 sec   (1714 perm/sec)   p_kst 2.528736e-01   p_cons 1.277011e-03   p_joint 6.774713e-03

Joint ci ratio: 5.061708e-02	ci left: 6.597934e-03	ci right 6.941688e-03	k: 5956	n:880000
Cons ci ratio: 1.168490e-01	ci left: 1.202625e-03	ci right 1.352962e-03	k: 1123	n:880000
KS ci ratio: 7.184179e-03	ci left: 2.518888e-01	ci right 2.537060e-01	k: 222461	n:880000
TIMM50   880000 perm   517 sec   (1702 perm/sec)   p_kst 2.527966e-01   p_cons 1.276136e-03   p_joint 6.768182e-03

Joint ci ratio: 4.542566e-02	ci left: 8.109220e-03	ci right 8.487250e-03	k: 7384	n:890000
Cons ci ratio: 1.161791e-01	ci left: 1.203293e-03	ci right 1.352792e-03	k: 1136	n:890000
KS ci ratio: 7.145298e-03	ci left: 2.518098e-01	ci right 2.536166e-01	k: 224914	n:890000
TIMM50   890000 perm   527 sec   (1690 perm/sec)   p_kst 2.527124e-01   p_cons 1.276404e-03   p_joint 8.296629e-03

Joint ci ratio: 4.619389e-02	ci left: 7.754374e-03	ci right 8.122137e-03	k: 7143	n:900000
Cons ci ratio: 1.153700e-01	ci left: 1.207186e-03	ci right 1.356053e-03	k: 1152	n:900000
KS ci ratio: 7.107041e-03	ci left: 2.517325e-01	ci right 2.535291e-01	k: 227367	n:900000
TIMM50   900000 perm   537 sec   (1675 perm/sec)   p_kst 2.526300e-01   p_cons 1.280000e-03   p_joint 7.936667e-03

Joint ci ratio: 4.604028e-02	ci left: 7.721297e-03	ci right 8.086242e-03	k: 7191	n:910000
Cons ci ratio: 1.146758e-01	ci left: 1.208863e-03	ci right 1.356978e-03	k: 1166	n:910000
KS ci ratio: 7.066862e-03	ci left: 2.517920e-01	ci right 2.535788e-01	k: 229943	n:910000
TIMM50   910000 perm   547 sec   (1664 perm/sec)   p_kst 2.526846e-01   p_cons 1.281319e-03   p_joint 7.902198e-03

Joint ci ratio: 4.594900e-02	ci left: 7.668524e-03	ci right 8.030237e-03	k: 7220	n:920000
Cons ci ratio: 1.142364e-01	ci left: 1.205225e-03	ci right 1.352291e-03	k: 1175	n:920000
KS ci ratio: 7.029035e-03	ci left: 2.517601e-01	ci right 2.535371e-01	k: 232436	n:920000
TIMM50   920000 perm   557 sec   (1652 perm/sec)   p_kst 2.526478e-01   p_cons 1.277174e-03   p_joint 7.847826e-03

Joint ci ratio: 4.631432e-02	ci left: 7.467008e-03	ci right 7.822090e-03	k: 7108	n:930000
Cons ci ratio: 1.134669e-01	ci left: 1.208980e-03	ci right 1.355444e-03	k: 1191	n:930000
KS ci ratio: 6.990674e-03	ci left: 2.517902e-01	ci right 2.535576e-01	k: 234986	n:930000
TIMM50   930000 perm   567 sec   (1641 perm/sec)   p_kst 2.526731e-01   p_cons 1.280645e-03   p_joint 7.643011e-03

Joint ci ratio: 4.621806e-02	ci left: 7.419113e-03	ci right 7.771165e-03	k: 7138	n:940000
Cons ci ratio: 1.127595e-01	ci left: 1.211625e-03	ci right 1.357433e-03	k: 1206	n:940000
KS ci ratio: 6.954306e-03	ci left: 2.517452e-01	ci right 2.535031e-01	k: 237466	n:940000
TIMM50   940000 perm   577 sec   (1629 perm/sec)   p_kst 2.526234e-01   p_cons 1.282979e-03   p_joint 7.593617e-03

Joint ci ratio: 4.035274e-02	ci left: 9.637270e-03	ci right 1.003520e-02	k: 9343	n:950000
Cons ci ratio: 1.120652e-01	ci left: 1.214217e-03	ci right 1.359378e-03	k: 1221	n:950000
KS ci ratio: 6.917265e-03	ci left: 2.517686e-01	ci right 2.535172e-01	k: 240010	n:950000
TIMM50   950000 perm   587 sec   (1618 perm/sec)   p_kst 2.526421e-01   p_cons 1.285263e-03   p_joint 9.834737e-03

Joint ci ratio: 4.096119e-02	ci left: 9.256391e-03	ci right 9.644494e-03	k: 9071	n:960000
Cons ci ratio: 1.113835e-01	ci left: 1.216757e-03	ci right 1.361279e-03	k: 1236	n:960000
KS ci ratio: 6.881987e-03	ci left: 2.517269e-01	ci right 2.534663e-01	k: 242492	n:960000
TIMM50   960000 perm   597 sec   (1607 perm/sec)   p_kst 2.525958e-01   p_cons 1.287500e-03   p_joint 9.448958e-03

Joint ci ratio: 4.126035e-02	ci left: 9.029320e-03	ci right 9.410733e-03	k: 8942	n:970000
Cons ci ratio: 1.106699e-01	ci left: 1.220250e-03	ci right 1.364198e-03	k: 1252	n:970000
KS ci ratio: 6.847579e-03	ci left: 2.516676e-01	ci right 2.533978e-01	k: 244956	n:970000
TIMM50   970000 perm   608 sec   (1596 perm/sec)   p_kst 2.525320e-01   p_cons 1.290722e-03   p_joint 9.218557e-03

Joint ci ratio: 3.967230e-02	ci left: 9.668549e-03	ci right 1.006089e-02	k: 9666	n:980000
Cons ci ratio: 1.101438e-01	ci left: 1.219705e-03	ci right 1.362860e-03	k: 1264	n:980000
KS ci ratio: 6.812891e-03	ci left: 2.516533e-01	ci right 2.533747e-01	k: 247463	n:980000
TIMM50   980000 perm   618 sec   (1586 perm/sec)   p_kst 2.525133e-01   p_cons 1.289796e-03   p_joint 9.863265e-03

Joint ci ratio: 3.950134e-02	ci left: 9.654894e-03	ci right 1.004495e-02	k: 9750	n:990000
Cons ci ratio: 1.097543e-01	ci left: 1.216226e-03	ci right 1.358435e-03	k: 1273	n:990000
KS ci ratio: 6.777455e-03	ci left: 2.517100e-01	ci right 2.534227e-01	k: 250040	n:990000
TIMM50   990000 perm   628 sec   (1576 perm/sec)   p_kst 2.525657e-01   p_cons 1.285859e-03   p_joint 9.848485e-03

Joint ci ratio: 3.927013e-02	ci left: 9.672214e-03	ci right 1.006063e-02	k: 9865	n:1000000
Cons ci ratio: 1.092411e-01	ci left: 1.215735e-03	ci right 1.357179e-03	k: 1285	n:1000000
KS ci ratio: 6.743315e-03	ci left: 2.517236e-01	ci right 2.534278e-01	k: 252575	n:1000000
TIMM50   1000000 perm   639 sec   (1566 perm/sec)   p_kst 2.525750e-01   p_cons 1.285000e-03   p_joint 9.865000e-03

Joint ci ratio: 3.990595e-02	ci left: 9.274480e-03	ci right 9.653094e-03	k: 9557	n:1010000
Cons ci ratio: 1.089453e-01	ci left: 1.210439e-03	ci right 1.350862e-03	k: 1292	n:1010000
KS ci ratio: 6.711465e-03	ci left: 2.516371e-01	ci right 2.533326e-01	k: 255009	n:1010000
TIMM50   1010000 perm   649 sec   (1555 perm/sec)   p_kst 2.524842e-01   p_cons 1.279208e-03   p_joint 9.462376e-03

Joint ci ratio: 3.999026e-02	ci left: 9.145688e-03	ci right 9.519851e-03	k: 9518	n:1020000
Cons ci ratio: 1.080296e-01	ci left: 1.219556e-03	ci right 1.359771e-03	k: 1314	n:1020000
KS ci ratio: 6.678048e-03	ci left: 2.516659e-01	ci right 2.533531e-01	k: 257559	n:1020000
TIMM50   1020000 perm   660 sec   (1545 perm/sec)   p_kst 2.525088e-01   p_cons 1.288235e-03   p_joint 9.331373e-03

Joint ci ratio: 3.849740e-02	ci left: 9.774122e-03	ci right 1.015874e-02	k: 10264	n:1030000
Cons ci ratio: 1.076213e-01	ci left: 1.217162e-03	ci right 1.356540e-03	k: 1324	n:1030000
KS ci ratio: 6.645673e-03	ci left: 2.516631e-01	ci right 2.533421e-01	k: 260077	n:1030000
TIMM50   1030000 perm   671 sec   (1535 perm/sec)   p_kst 2.525019e-01   p_cons 1.285437e-03   p_joint 9.965049e-03

Joint ci ratio: 3.950057e-02	ci left: 9.195434e-03	ci right 9.566921e-03	k: 9755	n:1040000
Cons ci ratio: 1.071373e-01	ci left: 1.216687e-03	ci right 1.355345e-03	k: 1336	n:1040000
KS ci ratio: 6.613612e-03	ci left: 2.516691e-01	ci right 2.533400e-01	k: 262604	n:1040000
TIMM50   1040000 perm   683 sec   (1523 perm/sec)   p_kst 2.525038e-01   p_cons 1.284615e-03   p_joint 9.379808e-03

Joint ci ratio: 3.977694e-02	ci left: 8.982428e-03	ci right 9.347907e-03	k: 9622	n:1050000
Cons ci ratio: 1.066598e-01	ci left: 1.216223e-03	ci right 1.354171e-03	k: 1348	n:1050000
KS ci ratio: 6.582625e-03	ci left: 2.516397e-01	ci right 2.533026e-01	k: 265094	n:1050000
TIMM50   1050000 perm   694 sec   (1514 perm/sec)   p_kst 2.524705e-01   p_cons 1.283810e-03   p_joint 9.163810e-03

Joint ci ratio: 3.960872e-02	ci left: 8.974278e-03	ci right 9.337846e-03	k: 9704	n:1060000
Cons ci ratio: 1.061886e-01	ci left: 1.215769e-03	ci right 1.353018e-03	k: 1360	n:1060000
KS ci ratio: 6.551251e-03	ci left: 2.516581e-01	ci right 2.533131e-01	k: 267634	n:1060000
TIMM50   1060000 perm   705 sec   (1504 perm/sec)   p_kst 2.524849e-01   p_cons 1.283019e-03   p_joint 9.154717e-03

Joint ci ratio: 3.959191e-02	ci left: 8.898727e-03	ci right 9.259078e-03	k: 9713	n:1070000
Cons ci ratio: 1.057621e-01	ci left: 1.214414e-03	ci right 1.350925e-03	k: 1371	n:1070000
KS ci ratio: 6.519950e-03	ci left: 2.516976e-01	ci right 2.533449e-01	k: 270197	n:1070000
TIMM50   1070000 perm   716 sec   (1494 perm/sec)   p_kst 2.525206e-01   p_cons 1.281308e-03   p_joint 9.077570e-03

Joint ci ratio: 3.940167e-02	ci left: 8.902510e-03	ci right 9.261242e-03	k: 9807	n:1080000
Cons ci ratio: 1.049615e-01	ci left: 1.222102e-03	ci right 1.358373e-03	k: 1392	n:1080000
KS ci ratio: 6.489428e-03	ci left: 2.517169e-01	ci right 2.533566e-01	k: 272739	n:1080000
TIMM50   1080000 perm   727 sec   (1485 perm/sec)   p_kst 2.525361e-01   p_cons 1.288889e-03   p_joint 9.080556e-03

Joint ci ratio: 4.332072e-02	ci left: 7.294411e-03	ci right 7.618306e-03	k: 8126	n:1090000
Cons ci ratio: 1.044380e-01	ci left: 1.223398e-03	ci right 1.359091e-03	k: 1406	n:1090000
KS ci ratio: 6.459158e-03	ci left: 2.517460e-01	ci right 2.533782e-01	k: 275292	n:1090000
TIMM50   1090000 perm   739 sec   (1476 perm/sec)   p_kst 2.525615e-01   p_cons 1.289908e-03   p_joint 7.455046e-03

Joint ci ratio: 4.307723e-02	ci left: 7.310832e-03	ci right 7.633587e-03	k: 8218	n:1100000
Cons ci ratio: 1.038490e-01	ci left: 1.226442e-03	ci right 1.361660e-03	k: 1422	n:1100000
KS ci ratio: 6.430066e-03	ci left: 2.517301e-01	ci right 2.533548e-01	k: 277796	n:1100000
TIMM50   1100000 perm   751 sec   (1465 perm/sec)   p_kst 2.525418e-01   p_cons 1.292727e-03   p_joint 7.470909e-03

Joint ci ratio: 4.287421e-02	ci left: 7.314485e-03	ci right 7.635841e-03	k: 8296	n:1110000
Cons ci ratio: 1.033059e-01	ci left: 1.228557e-03	ci right 1.363256e-03	k: 1437	n:1110000
KS ci ratio: 6.400676e-03	ci left: 2.517550e-01	ci right 2.533724e-01	k: 280345	n:1110000
TIMM50   1110000 perm   762 sec   (1456 perm/sec)   p_kst 2.525631e-01   p_cons 1.294595e-03   p_joint 7.473874e-03

Joint ci ratio: 4.267146e-02	ci left: 7.318958e-03	ci right 7.638954e-03	k: 8375	n:1120000
Cons ci ratio: 1.026651e-01	ci left: 1.233245e-03	ci right 1.367569e-03	k: 1455	n:1120000
KS ci ratio: 6.371957e-03	ci left: 2.517634e-01	ci right 2.533736e-01	k: 282876	n:1120000
TIMM50   1120000 perm   774 sec   (1447 perm/sec)   p_kst 2.525679e-01   p_cons 1.299107e-03   p_joint 7.477679e-03

Joint ci ratio: 4.246903e-02	ci left: 7.324232e-03	ci right 7.642902e-03	k: 8455	n:1130000
Cons ci ratio: 1.021750e-01	ci left: 1.234404e-03	ci right 1.368173e-03	k: 1469	n:1130000
KS ci ratio: 6.343546e-03	ci left: 2.517761e-01	ci right 2.533792e-01	k: 285412	n:1130000
TIMM50   1130000 perm   786 sec   (1438 perm/sec)   p_kst 2.525770e-01   p_cons 1.300000e-03   p_joint 7.482301e-03

Joint ci ratio: 4.228193e-02	ci left: 7.325077e-03	ci right 7.642345e-03	k: 8530	n:1140000
Cons ci ratio: 1.018983e-01	ci left: 1.230414e-03	ci right 1.363369e-03	k: 1477	n:1140000
KS ci ratio: 6.315483e-03	ci left: 2.517903e-01	ci right 2.533864e-01	k: 287950	n:1140000
TIMM50   1140000 perm   797 sec   (1430 perm/sec)   p_kst 2.525877e-01   p_cons 1.295614e-03   p_joint 7.482456e-03

Joint ci ratio: 4.136504e-02	ci left: 7.588381e-03	ci right 7.909758e-03	k: 8910	n:1150000
Cons ci ratio: 1.015896e-01	ci left: 1.227342e-03	ci right 1.359539e-03	k: 1486	n:1150000
KS ci ratio: 6.289179e-03	ci left: 2.517209e-01	ci right 2.533099e-01	k: 290392	n:1150000
TIMM50   1150000 perm   809 sec   (1422 perm/sec)   p_kst 2.525148e-01   p_cons 1.292174e-03   p_joint 7.747826e-03

Joint ci ratio: 4.050498e-02	ci left: 7.847219e-03	ci right 8.172487e-03	k: 9290	n:1160000
Cons ci ratio: 1.012160e-01	ci left: 1.226003e-03	ci right 1.357542e-03	k: 1497	n:1160000
KS ci ratio: 6.262429e-03	ci left: 2.516993e-01	ci right 2.532813e-01	k: 292888	n:1160000
TIMM50   1160000 perm   821 sec   (1413 perm/sec)   p_kst 2.524897e-01   p_cons 1.290517e-03   p_joint 8.008621e-03

Joint ci ratio: 3.968989e-02	ci left: 8.104238e-03	ci right 8.433246e-03	k: 9673	n:1170000
Cons ci ratio: 1.009135e-01	ci left: 1.223022e-03	ci right 1.353826e-03	k: 1506	n:1170000
KS ci ratio: 6.235269e-03	ci left: 2.517232e-01	ci right 2.532985e-01	k: 295437	n:1170000
TIMM50   1170000 perm   834 sec   (1403 perm/sec)   p_kst 2.525103e-01   p_cons 1.287179e-03   p_joint 8.267521e-03

Joint ci ratio: 3.952480e-02	ci left: 8.103522e-03	ci right 8.431102e-03	k: 9754	n:1180000
Cons ci ratio: 1.004149e-01	ci left: 1.225050e-03	ci right 1.355384e-03	k: 1521	n:1180000
KS ci ratio: 6.209923e-03	ci left: 2.516579e-01	ci right 2.532264e-01	k: 297881	n:1180000
TIMM50   1180000 perm   846 sec   (1395 perm/sec)   p_kst 2.524415e-01   p_cons 1.288983e-03   p_joint 8.266102e-03

Joint ci ratio: 3.934360e-02	ci left: 8.110311e-03	ci right 8.436627e-03	k: 9844	n:1190000
Cons ci ratio: 1.001195e-01	ci left: 1.222128e-03	ci right 1.351747e-03	k: 1530	n:1190000
KS ci ratio: 6.184773e-03	ci left: 2.516004e-01	ci right 2.531621e-01	k: 300333	n:1190000
TIMM50   1190000 perm   859 sec   (1386 perm/sec)   p_kst 2.523807e-01   p_cons 1.285714e-03   p_joint 8.272269e-03

Joint ci ratio: 3.914699e-02	ci left: 8.124416e-03	ci right 8.449630e-03	k: 9943	n:1200000
Cons ci ratio: 9.969713e-02	ci left: 1.222507e-03	ci right 1.351586e-03	k: 1543	n:1200000
KS ci ratio: 6.158199e-03	ci left: 2.516496e-01	ci right 2.532049e-01	k: 302912	n:1200000
TIMM50   1200000 perm   872 sec   (1377 perm/sec)   p_kst 2.524267e-01   p_cons 1.285833e-03   p_joint 8.285833e-03

Outputting figure to mutsig2_images.part000000000175/TIMM50.5_1415_1200000_0.25243_0.0012858_0.0082858.png
                gene_name: TIMM50
               theta_stop: 0.100 
                    nperm: 1200000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.0013 
      ci_cons_bounds_left: 0.0012 
     ci_cons_bounds_right: 0.0014 
                  p_joint: 0.0083 
     ci_joint_bounds_left: 0.0081 
    ci_joint_bounds_right: 0.0084 

Current progress: 42 percent done.
TJP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.389364e-02	ci left: 7.202736e-01	ci right 7.377928e-01	k: 7291	n:10000
Cons ci ratio: 5.856484e-02	ci left: 3.002475e-01	ci right 3.184636e-01	k: 3093	n:10000
KS ci ratio: 1.906652e-02	ci left: 8.008515e-01	ci right 8.163683e-01	k: 8087	n:10000
TJP2   10000 perm   2 sec   (4543 perm/sec)   p_kst 8.087000e-01   p_cons 3.093000e-01   p_joint 7.291000e-01

Outputting figure to mutsig2_images.part000000000175/TJP2.5_3924_10000_0.8087_0.3093_0.7291.png
                gene_name: TJP2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 44 percent done.
TKTL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.291121e-02	ci left: 1.440348e-01	ci right 1.581691e-01	k: 1510	n:10000
Cons ci ratio: 1.164346e-01	ci left: 9.584256e-02	ci right 1.077905e-01	k: 1017	n:10000
KS ci ratio: 8.723287e-02	ci left: 1.606216e-01	ci right 1.753724e-01	k: 1679	n:10000
TKTL1   10000 perm   2 sec   (4838 perm/sec)   p_kst 1.679000e-01   p_cons 1.017000e-01   p_joint 1.510000e-01

Joint ci ratio: 7.561694e-02	ci left: 1.139531e-01	ci right 1.229581e-01	k: 2368	n:20000
Cons ci ratio: 8.306188e-02	ci left: 9.602285e-02	ci right 1.043938e-01	k: 2003	n:20000
KS ci ratio: 6.090124e-02	ci left: 1.663483e-01	ci right 1.768473e-01	k: 3431	n:20000
TKTL1   20000 perm   5 sec   (4382 perm/sec)   p_kst 1.715500e-01   p_cons 1.001500e-01   p_joint 1.184000e-01

Outputting figure to mutsig2_images.part000000000175/TKTL1.5_1843_20000_0.17155_0.10015_0.1184.png
                gene_name: TKTL1
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 46 percent done.
TLR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.199211e-02	ci left: 7.521113e-01	ci right 7.689367e-01	k: 7606	n:10000
Cons ci ratio: 3.143295e-02	ci left: 5.989536e-01	ci right 6.181831e-01	k: 6086	n:10000
KS ci ratio: 3.506812e-02	ci left: 5.455956e-01	ci right 5.651722e-01	k: 5554	n:10000
TLR1   10000 perm   2 sec   (4981 perm/sec)   p_kst 5.554000e-01   p_cons 6.086000e-01   p_joint 7.606000e-01

Outputting figure to mutsig2_images.part000000000175/TLR1.5_2365_10000_0.5554_0.6086_0.7606.png
                gene_name: TLR1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 48 percent done.
TLR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.936549e-02	ci left: 6.310052e-01	ci right 6.499129e-01	k: 6405	n:10000
Cons ci ratio: 1.422396e-02	ci left: 8.772546e-01	ci right 8.899209e-01	k: 8837	n:10000
KS ci ratio: 5.118453e-02	ci left: 3.601284e-01	ci right 3.791476e-01	k: 3696	n:10000
TLR3   10000 perm   2 sec   (4438 perm/sec)   p_kst 3.696000e-01   p_cons 8.837000e-01   p_joint 6.405000e-01

Outputting figure to mutsig2_images.part000000000175/TLR3.5_2731_10000_0.3696_0.8837_0.6405.png
                gene_name: TLR3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 50 percent done.
TIAL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.663204e-02	ci left: 1.344301e-01	ci right 1.481796e-01	k: 1412	n:10000
Cons ci ratio: 3.210996e-02	ci left: 5.887143e-01	ci right 6.080283e-01	k: 5984	n:10000
KS ci ratio: 2.013935e-01	ci left: 3.281488e-02	ci right 4.025825e-02	k: 364	n:10000
TIAL1   10000 perm   2 sec   (5726 perm/sec)   p_kst 3.640000e-02   p_cons 5.984000e-01   p_joint 1.412000e-01

Joint ci ratio: 1.096623e-01	ci left: 5.674781e-02	ci right 6.338081e-02	k: 1200	n:20000
Cons ci ratio: 2.271822e-02	ci left: 5.913164e-01	ci right 6.049550e-01	k: 11963	n:20000
KS ci ratio: 1.406204e-01	ci left: 3.476452e-02	ci right 4.007106e-02	k: 747	n:20000
TIAL1   20000 perm   4 sec   (5095 perm/sec)   p_kst 3.735000e-02   p_cons 5.981500e-01   p_joint 6.000000e-02

Joint ci ratio: 7.880085e-02	ci left: 7.318945e-02	ci right 7.922626e-02	k: 2285	n:30000
Cons ci ratio: 1.858894e-02	ci left: 5.915573e-01	ci right 6.026905e-01	k: 17914	n:30000
KS ci ratio: 1.173954e-01	ci left: 3.372600e-02	ci right 3.796450e-02	k: 1074	n:30000
TIAL1   30000 perm   6 sec   (4870 perm/sec)   p_kst 3.580000e-02   p_cons 5.971333e-01   p_joint 7.616667e-02

Joint ci ratio: 6.744464e-02	ci left: 7.524249e-02	ci right 8.051898e-02	k: 3114	n:40000
Cons ci ratio: 1.609474e-02	ci left: 5.924242e-01	ci right 6.020616e-01	k: 23890	n:40000
KS ci ratio: 1.018276e-01	ci left: 3.390300e-02	ci right 3.756480e-02	k: 1428	n:40000
TIAL1   40000 perm   9 sec   (4681 perm/sec)   p_kst 3.570000e-02   p_cons 5.972500e-01   p_joint 7.785000e-02

Joint ci ratio: 7.261023e-02	ci left: 5.307655e-02	ci right 5.709530e-02	k: 2753	n:50000
Cons ci ratio: 1.442829e-02	ci left: 5.918437e-01	ci right 6.004651e-01	k: 29808	n:50000
KS ci ratio: 9.439546e-02	ci left: 3.176404e-02	ci right 3.493044e-02	k: 1666	n:50000
TIAL1   50000 perm   11 sec   (4555 perm/sec)   p_kst 3.332000e-02   p_cons 5.961600e-01   p_joint 5.506000e-02

Outputting figure to mutsig2_images.part000000000175/TIAL1.4_1227_50000_0.03332_0.59616_0.05506.png
                gene_name: TIAL1
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 52 percent done.
TIGIT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.376227e-01	ci left: 1.105573e-02	ci right 1.563427e-02	k: 132	n:10000
Cons ci ratio: 5.829190e-02	ci left: 3.022309e-01	ci right 3.204791e-01	k: 3113	n:10000
KS ci ratio: 9.230750e-01	ci left: 9.906147e-04	ci right 2.720474e-03	k: 17	n:10000
TIGIT   10000 perm   2 sec   (6052 perm/sec)   p_kst 1.700000e-03   p_cons 3.113000e-01   p_joint 1.320000e-02

Joint ci ratio: 3.815379e-01	ci left: 4.250695e-03	ci right 6.297200e-03	k: 104	n:20000
Cons ci ratio: 3.982864e-02	ci left: 3.197530e-01	ci right 3.327976e-01	k: 6525	n:20000
KS ci ratio: 6.818042e-01	ci left: 1.094648e-03	ci right 2.257979e-03	k: 32	n:20000
TIGIT   20000 perm   4 sec   (5341 perm/sec)   p_kst 1.600000e-03   p_cons 3.262500e-01   p_joint 5.200000e-03

Joint ci ratio: 3.973651e-01	ci left: 2.592756e-03	ci right 3.906364e-03	k: 96	n:30000
Cons ci ratio: 3.265356e-02	ci left: 3.191694e-01	ci right 3.297979e-01	k: 9734	n:30000
KS ci ratio: 5.839110e-01	ci left: 1.065878e-03	ci right 1.968437e-03	k: 44	n:30000
TIGIT   30000 perm   6 sec   (5061 perm/sec)   p_kst 1.466667e-03   p_cons 3.244667e-01   p_joint 3.200000e-03

Joint ci ratio: 1.847870e-01	ci left: 1.009638e-02	ci right 1.217550e-02	k: 444	n:40000
Cons ci ratio: 2.831433e-02	ci left: 3.193394e-01	ci right 3.285362e-01	k: 12957	n:40000
KS ci ratio: 5.143415e-01	ci left: 1.079454e-03	ci right 1.845864e-03	k: 57	n:40000
TIGIT   40000 perm   8 sec   (4883 perm/sec)   p_kst 1.425000e-03   p_cons 3.239250e-01   p_joint 1.110000e-02

Joint ci ratio: 1.902412e-01	ci left: 7.618678e-03	ci right 9.239171e-03	k: 420	n:50000
Cons ci ratio: 2.537317e-02	ci left: 3.190012e-01	ci right 3.272193e-01	k: 16155	n:50000
KS ci ratio: 4.858952e-01	ci left: 9.858912e-04	ci right 1.634242e-03	k: 64	n:50000
TIGIT   50000 perm   11 sec   (4737 perm/sec)   p_kst 1.280000e-03   p_cons 3.231000e-01   p_joint 8.400000e-03

Joint ci ratio: 1.943680e-01	ci left: 6.078723e-03	ci right 7.402999e-03	k: 403	n:60000
Cons ci ratio: 2.314938e-02	ci left: 3.196075e-01	ci right 3.271096e-01	k: 19401	n:60000
KS ci ratio: 4.083714e-01	ci left: 1.221296e-03	ci right 1.861809e-03	k: 91	n:60000
TIGIT   60000 perm   13 sec   (4619 perm/sec)   p_kst 1.516667e-03   p_cons 3.233500e-01   p_joint 6.716667e-03

Joint ci ratio: 2.136579e-01	ci left: 4.274417e-03	ci right 5.310147e-03	k: 334	n:70000
Cons ci ratio: 2.146205e-02	ci left: 3.192797e-01	ci right 3.262207e-01	k: 22592	n:70000
KS ci ratio: 3.822631e-01	ci left: 1.214093e-03	ci right 1.799908e-03	k: 104	n:70000
TIGIT   70000 perm   16 sec   (4514 perm/sec)   p_kst 1.485714e-03   p_cons 3.227429e-01   p_joint 4.771429e-03

Joint ci ratio: 1.982669e-01	ci left: 4.380366e-03	ci right 5.356074e-03	k: 388	n:80000
Cons ci ratio: 2.009002e-02	ci left: 3.191988e-01	ci right 3.256891e-01	k: 25795	n:80000
KS ci ratio: 3.358493e-01	ci left: 1.415043e-03	ci right 1.997051e-03	k: 135	n:80000
TIGIT   80000 perm   18 sec   (4411 perm/sec)   p_kst 1.687500e-03   p_cons 3.224375e-01   p_joint 4.850000e-03

Joint ci ratio: 1.924464e-01	ci left: 4.147234e-03	ci right 5.040714e-03	k: 412	n:90000
Cons ci ratio: 1.891580e-02	ci left: 3.199673e-01	ci right 3.260886e-01	k: 29072	n:90000
KS ci ratio: 3.125753e-01	ci left: 1.472190e-03	ci right 2.027382e-03	k: 156	n:90000
TIGIT   90000 perm   21 sec   (4286 perm/sec)   p_kst 1.733333e-03   p_cons 3.230222e-01   p_joint 4.577778e-03

Joint ci ratio: 1.543329e-01	ci left: 5.915113e-03	ci right 6.913840e-03	k: 640	n:100000
Cons ci ratio: 1.794237e-02	ci left: 3.201917e-01	ci right 3.259986e-01	k: 32309	n:100000
KS ci ratio: 2.952195e-01	ci left: 1.500499e-03	ci right 2.029073e-03	k: 175	n:100000
TIGIT   100000 perm   24 sec   (4203 perm/sec)   p_kst 1.750000e-03   p_cons 3.230900e-01   p_joint 6.400000e-03

Joint ci ratio: 1.488710e-01	ci left: 5.797162e-03	ci right 6.738246e-03	k: 688	n:110000
Cons ci ratio: 1.711591e-02	ci left: 3.201097e-01	ci right 3.256451e-01	k: 35516	n:110000
KS ci ratio: 2.790370e-01	ci left: 1.541266e-03	ci right 2.049216e-03	k: 196	n:110000
TIGIT   110000 perm   27 sec   (4093 perm/sec)   p_kst 1.781818e-03   p_cons 3.228727e-01   p_joint 6.254545e-03

Joint ci ratio: 1.477287e-01	ci left: 5.402248e-03	ci right 6.271895e-03	k: 699	n:120000
Cons ci ratio: 1.637626e-02	ci left: 3.205207e-01	ci right 3.258212e-01	k: 38780	n:120000
KS ci ratio: 2.677255e-01	ci left: 1.544787e-03	ci right 2.029798e-03	k: 213	n:120000
TIGIT   120000 perm   30 sec   (3999 perm/sec)   p_kst 1.775000e-03   p_cons 3.231667e-01   p_joint 5.825000e-03

Joint ci ratio: 1.485105e-01	ci left: 4.934750e-03	ci right 5.733713e-03	k: 692	n:130000
Cons ci ratio: 1.574868e-02	ci left: 3.202125e-01	ci right 3.253031e-01	k: 41958	n:130000
KS ci ratio: 2.571299e-01	ci left: 1.555315e-03	ci right 2.021206e-03	k: 231	n:130000
TIGIT   130000 perm   33 sec   (3906 perm/sec)   p_kst 1.776923e-03   p_cons 3.227538e-01   p_joint 5.323077e-03

Joint ci ratio: 1.417127e-01	ci left: 5.050375e-03	ci right 5.827467e-03	k: 760	n:140000
Cons ci ratio: 1.516853e-02	ci left: 3.205150e-01	ci right 3.254209e-01	k: 45215	n:140000
KS ci ratio: 2.467136e-01	ci left: 1.578064e-03	ci right 2.028686e-03	k: 251	n:140000
TIGIT   140000 perm   36 sec   (3837 perm/sec)   p_kst 1.792857e-03   p_cons 3.229643e-01   p_joint 5.428571e-03

Joint ci ratio: 1.387465e-01	ci left: 4.925943e-03	ci right 5.666711e-03	k: 793	n:150000
Cons ci ratio: 1.464899e-02	ci left: 3.207534e-01	ci right 3.254934e-01	k: 48468	n:150000
KS ci ratio: 2.361673e-01	ci left: 1.616925e-03	ci right 2.056023e-03	k: 274	n:150000
TIGIT   150000 perm   40 sec   (3763 perm/sec)   p_kst 1.826667e-03   p_cons 3.231200e-01   p_joint 5.286667e-03

Joint ci ratio: 1.361242e-01	ci left: 4.805138e-03	ci right 5.512975e-03	k: 824	n:160000
Cons ci ratio: 1.418388e-02	ci left: 3.208273e-01	ci right 3.254166e-01	k: 51699	n:160000
KS ci ratio: 2.324019e-01	ci left: 1.568811e-03	ci right 1.987074e-03	k: 283	n:160000
TIGIT   160000 perm   43 sec   (3682 perm/sec)   p_kst 1.768750e-03   p_cons 3.231188e-01   p_joint 5.150000e-03

Joint ci ratio: 1.161210e-01	ci left: 6.271993e-03	ci right 7.050857e-03	k: 1131	n:170000
Cons ci ratio: 1.378137e-02	ci left: 3.202311e-01	ci right 3.246808e-01	k: 54817	n:170000
KS ci ratio: 2.280324e-01	ci left: 1.537499e-03	ci right 1.938623e-03	k: 294	n:170000
TIGIT   170000 perm   47 sec   (3613 perm/sec)   p_kst 1.729412e-03   p_cons 3.224529e-01   p_joint 6.652941e-03

Joint ci ratio: 1.151236e-01	ci left: 6.031403e-03	ci right 6.773518e-03	k: 1151	n:180000
Cons ci ratio: 1.338841e-02	ci left: 3.204461e-01	ci right 3.247708e-01	k: 58069	n:180000
KS ci ratio: 2.224486e-01	ci left: 1.530714e-03	ci right 1.918950e-03	k: 309	n:180000
TIGIT   180000 perm   51 sec   (3555 perm/sec)   p_kst 1.716667e-03   p_cons 3.226056e-01   p_joint 6.394444e-03

Joint ci ratio: 1.141504e-01	ci left: 5.816169e-03	ci right 6.525341e-03	k: 1171	n:190000
Cons ci ratio: 1.303448e-02	ci left: 3.203983e-01	ci right 3.246071e-01	k: 61275	n:190000
KS ci ratio: 2.186076e-01	ci left: 1.504845e-03	ci right 1.879043e-03	k: 320	n:190000
TIGIT   190000 perm   54 sec   (3502 perm/sec)   p_kst 1.684211e-03   p_cons 3.225000e-01   p_joint 6.163158e-03

Joint ci ratio: 1.154129e-01	ci left: 5.403882e-03	ci right 6.070566e-03	k: 1146	n:200000
Cons ci ratio: 1.269312e-02	ci left: 3.208409e-01	ci right 3.249443e-01	k: 64578	n:200000
KS ci ratio: 2.152838e-01	ci left: 1.476884e-03	ci right 1.837807e-03	k: 330	n:200000
TIGIT   200000 perm   58 sec   (3454 perm/sec)   p_kst 1.650000e-03   p_cons 3.228900e-01   p_joint 5.730000e-03

Joint ci ratio: 1.122734e-01	ci left: 5.447272e-03	ci right 6.099817e-03	k: 1211	n:210000
Cons ci ratio: 1.238087e-02	ci left: 3.211142e-01	ci right 3.251193e-01	k: 67854	n:210000
KS ci ratio: 2.111786e-01	ci left: 1.465154e-03	ci right 1.815499e-03	k: 343	n:210000
TIGIT   210000 perm   62 sec   (3408 perm/sec)   p_kst 1.633333e-03   p_cons 3.231143e-01   p_joint 5.766667e-03

Joint ci ratio: 1.133271e-01	ci left: 5.102439e-03	ci right 5.719794e-03	k: 1189	n:220000
Cons ci ratio: 1.209750e-02	ci left: 3.211141e-01	ci right 3.250269e-01	k: 71075	n:220000
KS ci ratio: 2.050114e-01	ci left: 1.489039e-03	ci right 1.833395e-03	k: 364	n:220000
TIGIT   220000 perm   65 sec   (3364 perm/sec)   p_kst 1.654545e-03   p_cons 3.230682e-01   p_joint 5.404545e-03

Joint ci ratio: 1.151039e-01	ci left: 4.728491e-03	ci right 5.310178e-03	k: 1153	n:230000
Cons ci ratio: 1.183614e-02	ci left: 3.209891e-01	ci right 3.248153e-01	k: 74267	n:230000
KS ci ratio: 2.014569e-01	ci left: 1.477943e-03	ci right 1.813078e-03	k: 377	n:230000
TIGIT   230000 perm   69 sec   (3319 perm/sec)   p_kst 1.639130e-03   p_cons 3.229000e-01   p_joint 5.013043e-03

Joint ci ratio: 1.129245e-01	ci left: 4.713621e-03	ci right 5.281768e-03	k: 1198	n:240000
Cons ci ratio: 1.159014e-02	ci left: 3.209087e-01	ci right 3.246539e-01	k: 77467	n:240000
KS ci ratio: 1.973242e-01	ci left: 1.479701e-03	ci right 1.807523e-03	k: 393	n:240000
TIGIT   240000 perm   73 sec   (3272 perm/sec)   p_kst 1.637500e-03   p_cons 3.227792e-01   p_joint 4.991667e-03

Joint ci ratio: 1.115422e-01	ci left: 4.641697e-03	ci right 5.193877e-03	k: 1228	n:250000
Cons ci ratio: 1.135149e-02	ci left: 3.211191e-01	ci right 3.247890e-01	k: 80738	n:250000
KS ci ratio: 1.934358e-01	ci left: 1.481382e-03	ci right 1.802349e-03	k: 409	n:250000
TIGIT   250000 perm   78 sec   (3225 perm/sec)   p_kst 1.636000e-03   p_cons 3.229520e-01   p_joint 4.912000e-03

Joint ci ratio: 9.927068e-02	ci left: 5.665484e-03	ci right 6.260995e-03	k: 1549	n:260000
Cons ci ratio: 1.114012e-02	ci left: 3.207994e-01	ci right 3.243969e-01	k: 83875	n:260000
KS ci ratio: 1.911215e-01	ci left: 1.461015e-03	ci right 1.773341e-03	k: 419	n:260000
TIGIT   260000 perm   82 sec   (3178 perm/sec)   p_kst 1.611538e-03   p_cons 3.225962e-01   p_joint 5.957692e-03

Joint ci ratio: 1.001960e-01	ci left: 5.354491e-03	ci right 5.922866e-03	k: 1521	n:270000
Cons ci ratio: 1.093132e-02	ci left: 3.208553e-01	ci right 3.243856e-01	k: 87107	n:270000
KS ci ratio: 1.882317e-01	ci left: 1.452764e-03	ci right 1.758094e-03	k: 432	n:270000
TIGIT   270000 perm   86 sec   (3139 perm/sec)   p_kst 1.600000e-03   p_cons 3.226185e-01   p_joint 5.633333e-03

Joint ci ratio: 1.009423e-01	ci left: 5.086629e-03	ci right 5.630830e-03	k: 1499	n:280000
Cons ci ratio: 1.074024e-02	ci left: 3.206474e-01	ci right 3.241134e-01	k: 90266	n:280000
KS ci ratio: 1.852613e-01	ci left: 1.448542e-03	ci right 1.747640e-03	k: 446	n:280000
TIGIT   280000 perm   90 sec   (3096 perm/sec)   p_kst 1.592857e-03   p_cons 3.223786e-01   p_joint 5.353571e-03

Joint ci ratio: 9.137021e-02	ci left: 6.018618e-03	ci right 6.598211e-03	k: 1828	n:290000
Cons ci ratio: 1.055376e-02	ci left: 3.206645e-01	ci right 3.240701e-01	k: 93486	n:290000
KS ci ratio: 1.822293e-01	ci left: 1.447937e-03	ci right 1.741477e-03	k: 461	n:290000
TIGIT   290000 perm   95 sec   (3057 perm/sec)   p_kst 1.589655e-03   p_cons 3.223655e-01   p_joint 6.303448e-03

Joint ci ratio: 9.181015e-02	ci left: 5.762594e-03	ci right 6.320346e-03	k: 1811	n:300000
Cons ci ratio: 1.037112e-02	ci left: 3.209139e-01	ci right 3.242628e-01	k: 96776	n:300000
KS ci ratio: 1.795300e-01	ci left: 1.444226e-03	ci right 1.732206e-03	k: 475	n:300000
TIGIT   300000 perm   99 sec   (3021 perm/sec)   p_kst 1.583333e-03   p_cons 3.225867e-01   p_joint 6.036667e-03

Joint ci ratio: 9.093986e-02	ci left: 5.687017e-03	ci right 6.231958e-03	k: 1846	n:310000
Cons ci ratio: 1.019690e-02	ci left: 3.211800e-01	ci right 3.244750e-01	k: 100076	n:310000
KS ci ratio: 1.758720e-01	ci left: 1.459286e-03	ci right 1.743710e-03	k: 495	n:310000
TIGIT   310000 perm   104 sec   (2983 perm/sec)   p_kst 1.596774e-03   p_cons 3.228258e-01   p_joint 5.954839e-03

Joint ci ratio: 9.205780e-02	ci left: 5.374904e-03	ci right 5.896610e-03	k: 1802	n:320000
Cons ci ratio: 1.003403e-02	ci left: 3.213049e-01	ci right 3.245483e-01	k: 103336	n:320000
KS ci ratio: 1.724289e-01	ci left: 1.473460e-03	ci right 1.754439e-03	k: 515	n:320000
TIGIT   320000 perm   109 sec   (2946 perm/sec)   p_kst 1.609375e-03   p_cons 3.229250e-01   p_joint 5.631250e-03

Joint ci ratio: 9.105559e-02	ci left: 5.330460e-03	ci right 5.841918e-03	k: 1842	n:330000
Cons ci ratio: 9.877634e-03	ci left: 3.214712e-01	ci right 3.246653e-01	k: 106612	n:330000
KS ci ratio: 1.699763e-01	ci left: 1.472317e-03	ci right 1.748675e-03	k: 530	n:330000
TIGIT   330000 perm   113 sec   (2913 perm/sec)   p_kst 1.606061e-03   p_cons 3.230667e-01   p_joint 5.581818e-03

Joint ci ratio: 8.956078e-02	ci left: 5.351918e-03	ci right 5.856564e-03	k: 1904	n:340000
Cons ci ratio: 9.731925e-03	ci left: 3.214664e-01	ci right 3.246131e-01	k: 109833	n:340000
KS ci ratio: 1.670139e-01	ci left: 1.482540e-03	ci right 1.755479e-03	k: 549	n:340000
TIGIT   340000 perm   118 sec   (2876 perm/sec)   p_kst 1.614706e-03   p_cons 3.230382e-01   p_joint 5.600000e-03

Joint ci ratio: 8.381132e-02	ci left: 5.951008e-03	ci right 6.474361e-03	k: 2173	n:350000
Cons ci ratio: 9.591039e-03	ci left: 3.215279e-01	ci right 3.246293e-01	k: 113077	n:350000
KS ci ratio: 1.640567e-01	ci left: 1.494958e-03	ci right 1.764829e-03	k: 569	n:350000
TIGIT   350000 perm   123 sec   (2839 perm/sec)   p_kst 1.625714e-03   p_cons 3.230771e-01   p_joint 6.208571e-03

Joint ci ratio: 1.046374e-01	ci left: 3.680074e-03	ci right 4.089087e-03	k: 1397	n:360000
Cons ci ratio: 9.455619e-03	ci left: 3.216084e-01	ci right 3.246666e-01	k: 116329	n:360000
KS ci ratio: 1.624975e-01	ci left: 1.482738e-03	ci right 1.747610e-03	k: 580	n:360000
TIGIT   360000 perm   128 sec   (2804 perm/sec)   p_kst 1.611111e-03   p_cons 3.231361e-01   p_joint 3.880556e-03

Joint ci ratio: 1.065335e-01	ci left: 3.451655e-03	ci right 3.842668e-03	k: 1348	n:370000
Cons ci ratio: 9.332695e-03	ci left: 3.213610e-01	ci right 3.243769e-01	k: 119461	n:370000
KS ci ratio: 1.599033e-01	ci left: 1.491944e-03	ci right 1.753798e-03	k: 599	n:370000
TIGIT   370000 perm   134 sec   (2771 perm/sec)   p_kst 1.618919e-03   p_cons 3.228676e-01   p_joint 3.643243e-03

Joint ci ratio: 9.480494e-02	ci left: 4.266538e-03	ci right 4.693703e-03	k: 1701	n:380000
Cons ci ratio: 9.209727e-03	ci left: 3.213503e-01	ci right 3.243261e-01	k: 122678	n:380000
KS ci ratio: 1.581993e-01	ci left: 1.485531e-03	ci right 1.743217e-03	k: 612	n:380000
TIGIT   380000 perm   139 sec   (2738 perm/sec)   p_kst 1.610526e-03   p_cons 3.228368e-01   p_joint 4.476316e-03

Joint ci ratio: 9.665284e-02	ci left: 3.996939e-03	ci right 4.405353e-03	k: 1637	n:390000
Cons ci ratio: 9.089522e-03	ci left: 3.214351e-01	ci right 3.243727e-01	k: 125932	n:390000
KS ci ratio: 1.567998e-01	ci left: 1.474533e-03	ci right 1.727836e-03	k: 623	n:390000
TIGIT   390000 perm   144 sec   (2706 perm/sec)   p_kst 1.597436e-03   p_cons 3.229026e-01   p_joint 4.197436e-03

Joint ci ratio: 9.509657e-02	ci left: 4.028782e-03	ci right 4.433452e-03	k: 1691	n:400000
Cons ci ratio: 8.971442e-03	ci left: 3.216358e-01	ci right 3.245368e-01	k: 129234	n:400000
KS ci ratio: 1.544652e-01	ci left: 1.483321e-03	ci right 1.733988e-03	k: 642	n:400000
TIGIT   400000 perm   150 sec   (2674 perm/sec)   p_kst 1.605000e-03   p_cons 3.230850e-01   p_joint 4.227500e-03

Joint ci ratio: 9.440372e-02	ci left: 3.990046e-03	ci right 4.387743e-03	k: 1716	n:410000
Cons ci ratio: 8.856364e-03	ci left: 3.219000e-01	ci right 3.247659e-01	k: 132566	n:410000
KS ci ratio: 1.532791e-01	ci left: 1.470592e-03	ci right 1.717025e-03	k: 652	n:410000
TIGIT   410000 perm   155 sec   (2641 perm/sec)   p_kst 1.590244e-03   p_cons 3.233317e-01   p_joint 4.185366e-03

Joint ci ratio: 9.359098e-02	ci left: 3.964792e-03	ci right 4.356383e-03	k: 1746	n:420000
Cons ci ratio: 8.753980e-03	ci left: 3.217333e-01	ci right 3.245644e-01	k: 135722	n:420000
KS ci ratio: 1.513218e-01	ci left: 1.474512e-03	ci right 1.718161e-03	k: 669	n:420000
TIGIT   420000 perm   161 sec   (2610 perm/sec)   p_kst 1.592857e-03   p_cons 3.231476e-01   p_joint 4.157143e-03

Joint ci ratio: 9.274646e-02	ci left: 3.945270e-03	ci right 4.331226e-03	k: 1778	n:430000
Cons ci ratio: 8.654558e-03	ci left: 3.216000e-01	ci right 3.243977e-01	k: 138889	n:430000
KS ci ratio: 1.487883e-01	ci left: 1.491702e-03	ci right 1.733698e-03	k: 692	n:430000
TIGIT   430000 perm   167 sec   (2578 perm/sec)   p_kst 1.609302e-03   p_cons 3.229977e-01   p_joint 4.134884e-03

Joint ci ratio: 9.241243e-02	ci left: 3.884460e-03	ci right 4.263025e-03	k: 1791	n:440000
Cons ci ratio: 8.557869e-03	ci left: 3.215025e-01	ci right 3.242680e-01	k: 142069	n:440000
KS ci ratio: 1.473081e-01	ci left: 1.488439e-03	ci right 1.727292e-03	k: 706	n:440000
TIGIT   440000 perm   173 sec   (2550 perm/sec)   p_kst 1.604545e-03   p_cons 3.228841e-01   p_joint 4.070455e-03

Joint ci ratio: 9.177609e-02	ci left: 3.852412e-03	ci right 4.225129e-03	k: 1816	n:450000
Cons ci ratio: 8.461940e-03	ci left: 3.215339e-01	ci right 3.242684e-01	k: 145305	n:450000
KS ci ratio: 1.457701e-01	ci left: 1.487474e-03	ci right 1.723462e-03	k: 721	n:450000
TIGIT   450000 perm   178 sec   (2523 perm/sec)   p_kst 1.602222e-03   p_cons 3.229000e-01   p_joint 4.035556e-03

Joint ci ratio: 9.053788e-02	ci left: 3.874884e-03	ci right 4.244450e-03	k: 1866	n:460000
Cons ci ratio: 8.655559e-03	ci left: 3.070460e-01	ci right 3.097173e-01	k: 141855	n:460000
KS ci ratio: 1.435977e-01	ci left: 1.501233e-03	ci right 1.735551e-03	k: 743	n:460000
TIGIT   460000 perm   184 sec   (2496 perm/sec)   p_kst 1.615217e-03   p_cons 3.083804e-01   p_joint 4.056522e-03

Joint ci ratio: 9.017882e-02	ci left: 3.823629e-03	ci right 4.186783e-03	k: 1881	n:470000
Cons ci ratio: 8.564129e-03	ci left: 3.070033e-01	ci right 3.096459e-01	k: 144912	n:470000
KS ci ratio: 1.419847e-01	ci left: 1.504170e-03	ci right 1.736086e-03	k: 760	n:470000
TIGIT   470000 perm   190 sec   (2471 perm/sec)   p_kst 1.617021e-03   p_cons 3.083234e-01   p_joint 4.002128e-03

Joint ci ratio: 9.013453e-02	ci left: 3.748036e-03	ci right 4.103827e-03	k: 1883	n:480000
Cons ci ratio: 8.474378e-03	ci left: 3.070208e-01	ci right 3.096357e-01	k: 147997	n:480000
KS ci ratio: 1.395294e-01	ci left: 1.527104e-03	ci right 1.758145e-03	k: 787	n:480000
TIGIT   480000 perm   196 sec   (2446 perm/sec)   p_kst 1.639583e-03   p_cons 3.083271e-01   p_joint 3.922917e-03

Joint ci ratio: 8.963802e-02	ci left: 3.713436e-03	ci right 4.063899e-03	k: 1904	n:490000
Cons ci ratio: 8.386588e-03	ci left: 3.070785e-01	ci right 3.096667e-01	k: 151102	n:490000
KS ci ratio: 1.377059e-01	ci left: 1.537310e-03	ci right 1.766606e-03	k: 808	n:490000
TIGIT   490000 perm   202 sec   (2421 perm/sec)   p_kst 1.648980e-03   p_cons 3.083714e-01   p_joint 3.885714e-03

Joint ci ratio: 8.954720e-02	ci left: 3.646982e-03	ci right 3.990806e-03	k: 1908	n:500000
Cons ci ratio: 8.304118e-03	ci left: 3.069981e-01	ci right 3.095601e-01	k: 154139	n:500000
KS ci ratio: 1.365300e-01	ci left: 1.533603e-03	ci right 1.760235e-03	k: 822	n:500000
TIGIT   500000 perm   209 sec   (2397 perm/sec)   p_kst 1.644000e-03   p_cons 3.082780e-01   p_joint 3.816000e-03

Joint ci ratio: 8.950352e-02	ci left: 3.579301e-03	ci right 3.916571e-03	k: 1910	n:510000
Cons ci ratio: 8.222710e-03	ci left: 3.069896e-01	ci right 3.095263e-01	k: 157211	n:510000
KS ci ratio: 1.353027e-01	ci left: 1.531944e-03	ci right 1.756132e-03	k: 837	n:510000
TIGIT   510000 perm   215 sec   (2373 perm/sec)   p_kst 1.641176e-03   p_cons 3.082569e-01   p_joint 3.745098e-03

Joint ci ratio: 9.293721e-02	ci left: 3.251110e-03	ci right 3.569847e-03	k: 1772	n:520000
Cons ci ratio: 8.142843e-03	ci left: 3.070238e-01	ci right 3.095360e-01	k: 160305	n:520000
KS ci ratio: 1.337160e-01	ci left: 1.539651e-03	ci right 1.762114e-03	k: 857	n:520000
TIGIT   520000 perm   221 sec   (2350 perm/sec)   p_kst 1.648077e-03   p_cons 3.082788e-01   p_joint 3.407692e-03

Joint ci ratio: 9.299285e-02	ci left: 3.186078e-03	ci right 3.498636e-03	k: 1770	n:530000
Cons ci ratio: 8.065437e-03	ci left: 3.070474e-01	ci right 3.095358e-01	k: 163394	n:530000
KS ci ratio: 1.327912e-01	ci left: 1.532487e-03	ci right 1.752263e-03	k: 869	n:530000
TIGIT   530000 perm   228 sec   (2327 perm/sec)   p_kst 1.639623e-03   p_cons 3.082906e-01   p_joint 3.339623e-03

Joint ci ratio: 8.447102e-02	ci left: 3.804383e-03	ci right 4.141713e-03	k: 2144	n:540000
Cons ci ratio: 7.992661e-03	ci left: 3.069389e-01	ci right 3.094039e-01	k: 166412	n:540000
KS ci ratio: 1.312903e-01	ci left: 1.539922e-03	ci right 1.758073e-03	k: 889	n:540000
TIGIT   540000 perm   235 sec   (2303 perm/sec)   p_kst 1.646296e-03   p_cons 3.081704e-01   p_joint 3.970370e-03

Joint ci ratio: 8.375198e-02	ci left: 3.801070e-03	ci right 4.135097e-03	k: 2181	n:550000
Cons ci ratio: 7.920502e-03	ci left: 3.069053e-01	ci right 3.093476e-01	k: 169469	n:550000
KS ci ratio: 1.304145e-01	ci left: 1.533027e-03	ci right 1.748641e-03	k: 901	n:550000
TIGIT   550000 perm   241 sec   (2280 perm/sec)   p_kst 1.638182e-03   p_cons 3.081255e-01   p_joint 3.965455e-03

Joint ci ratio: 8.394830e-02	ci left: 3.715704e-03	ci right 4.043033e-03	k: 2171	n:560000
Cons ci ratio: 7.852203e-03	ci left: 3.067678e-01	ci right 3.091878e-01	k: 172467	n:560000
KS ci ratio: 1.296983e-01	ci left: 1.522927e-03	ci right 1.735853e-03	k: 911	n:560000
TIGIT   560000 perm   248 sec   (2258 perm/sec)   p_kst 1.626786e-03   p_cons 3.079768e-01   p_joint 3.876786e-03

Joint ci ratio: 8.416538e-02	ci left: 3.631617e-03	ci right 3.952406e-03	k: 2160	n:570000
Cons ci ratio: 7.782212e-03	ci left: 3.068226e-01	ci right 3.092214e-01	k: 175572	n:570000
KS ci ratio: 1.284368e-01	ci left: 1.526769e-03	ci right 1.737998e-03	k: 929	n:570000
TIGIT   570000 perm   255 sec   (2236 perm/sec)   p_kst 1.629825e-03   p_cons 3.080211e-01   p_joint 3.789474e-03

Joint ci ratio: 8.335892e-02	ci left: 3.639901e-03	ci right 3.958190e-03	k: 2202	n:580000
Cons ci ratio: 7.718804e-03	ci left: 3.066139e-01	ci right 3.089915e-01	k: 178525	n:580000
KS ci ratio: 1.268102e-01	ci left: 1.540504e-03	ci right 1.750731e-03	k: 953	n:580000
TIGIT   580000 perm   262 sec   (2215 perm/sec)   p_kst 1.643103e-03   p_cons 3.078017e-01   p_joint 3.796552e-03

Joint ci ratio: 8.075392e-02	ci left: 3.817282e-03	ci right 4.140161e-03	k: 2346	n:590000
Cons ci ratio: 7.651407e-03	ci left: 3.067188e-01	ci right 3.090763e-01	k: 181659	n:590000
KS ci ratio: 1.261514e-01	ci left: 1.530806e-03	ci right 1.738543e-03	k: 963	n:590000
TIGIT   590000 perm   269 sec   (2195 perm/sec)   p_kst 1.632203e-03   p_cons 3.078966e-01   p_joint 3.976271e-03

Joint ci ratio: 8.027728e-02	ci left: 3.799386e-03	ci right 4.118766e-03	k: 2374	n:600000
Cons ci ratio: 7.587644e-03	ci left: 3.067137e-01	ci right 3.090515e-01	k: 184729	n:600000
KS ci ratio: 1.255674e-01	ci left: 1.519820e-03	ci right 1.725040e-03	k: 972	n:600000
TIGIT   600000 perm   276 sec   (2176 perm/sec)   p_kst 1.620000e-03   p_cons 3.078817e-01   p_joint 3.956667e-03

Joint ci ratio: 7.964277e-02	ci left: 3.798151e-03	ci right 4.114786e-03	k: 2412	n:610000
Cons ci ratio: 7.522411e-03	ci left: 3.068809e-01	ci right 3.091997e-01	k: 187904	n:610000
KS ci ratio: 1.246107e-01	ci left: 1.518725e-03	ci right 1.722120e-03	k: 987	n:610000
TIGIT   610000 perm   283 sec   (2157 perm/sec)   p_kst 1.618033e-03   p_cons 3.080393e-01   p_joint 3.954098e-03

Joint ci ratio: 7.926696e-02	ci left: 3.773248e-03	ci right 4.086254e-03	k: 2435	n:620000
Cons ci ratio: 7.460805e-03	ci left: 3.069299e-01	ci right 3.092300e-01	k: 191009	n:620000
KS ci ratio: 1.233679e-01	ci left: 1.525488e-03	ci right 1.727602e-03	k: 1007	n:620000
TIGIT   620000 perm   290 sec   (2138 perm/sec)   p_kst 1.624194e-03   p_cons 3.080790e-01   p_joint 3.927419e-03

Joint ci ratio: 8.004840e-02	ci left: 3.640228e-03	ci right 3.945315e-03	k: 2388	n:630000
Cons ci ratio: 7.401847e-03	ci left: 3.069108e-01	ci right 3.091925e-01	k: 194072	n:630000
KS ci ratio: 1.222211e-01	ci left: 1.530506e-03	ci right 1.731264e-03	k: 1026	n:630000
TIGIT   630000 perm   297 sec   (2119 perm/sec)   p_kst 1.628571e-03   p_cons 3.080508e-01   p_joint 3.790476e-03

Joint ci ratio: 8.018565e-02	ci left: 3.571095e-03	ci right 3.870925e-03	k: 2380	n:640000
Cons ci ratio: 7.342810e-03	ci left: 3.069767e-01	ci right 3.092406e-01	k: 197189	n:640000
KS ci ratio: 1.215723e-01	ci left: 1.523255e-03	ci right 1.721925e-03	k: 1037	n:640000
TIGIT   640000 perm   305 sec   (2100 perm/sec)   p_kst 1.620313e-03   p_cons 3.081078e-01   p_joint 3.718750e-03

Joint ci ratio: 8.262671e-02	ci left: 3.308150e-03	ci right 3.594765e-03	k: 2242	n:650000
Cons ci ratio: 7.286794e-03	ci left: 3.069454e-01	ci right 3.091917e-01	k: 200244	n:650000
KS ci ratio: 1.205887e-01	ci left: 1.525182e-03	ci right 1.722379e-03	k: 1054	n:650000
TIGIT   650000 perm   312 sec   (2081 perm/sec)   p_kst 1.621538e-03   p_cons 3.080677e-01   p_joint 3.449231e-03

Joint ci ratio: 8.193535e-02	ci left: 3.314418e-03	ci right 3.599059e-03	k: 2280	n:660000
Cons ci ratio: 7.231373e-03	ci left: 3.069544e-01	ci right 3.091836e-01	k: 203325	n:660000
KS ci ratio: 1.194058e-01	ci left: 1.532937e-03	ci right 1.729055e-03	k: 1075	n:660000
TIGIT   660000 perm   320 sec   (2064 perm/sec)   p_kst 1.628788e-03   p_cons 3.080682e-01   p_joint 3.454545e-03

Joint ci ratio: 8.602579e-02	ci left: 2.956610e-03	ci right 3.223835e-03	k: 2069	n:670000
Cons ci ratio: 7.179082e-03	ci left: 3.068514e-01	ci right 3.090637e-01	k: 206331	n:670000
KS ci ratio: 1.189651e-01	ci left: 1.521641e-03	ci right 1.715545e-03	k: 1083	n:670000
TIGIT   670000 perm   327 sec   (2046 perm/sec)   p_kst 1.616418e-03   p_cons 3.079567e-01   p_joint 3.088060e-03

Joint ci ratio: 8.544999e-02	ci left: 2.953423e-03	ci right 3.218485e-03	k: 2097	n:680000
Cons ci ratio: 7.125744e-03	ci left: 3.068808e-01	ci right 3.090768e-01	k: 209425	n:680000
KS ci ratio: 1.180967e-01	ci left: 1.522096e-03	ci right 1.714543e-03	k: 1099	n:680000
TIGIT   680000 perm   335 sec   (2029 perm/sec)   p_kst 1.616176e-03   p_cons 3.079779e-01   p_joint 3.083824e-03

Joint ci ratio: 8.484558e-02	ci left: 2.953173e-03	ci right 3.216244e-03	k: 2127	n:690000
Cons ci ratio: 7.074661e-03	ci left: 3.068442e-01	ci right 3.090241e-01	k: 212474	n:690000
KS ci ratio: 1.174581e-01	ci left: 1.516915e-03	ci right 1.707598e-03	k: 1111	n:690000
TIGIT   690000 perm   343 sec   (2011 perm/sec)   p_kst 1.610145e-03   p_cons 3.079333e-01   p_joint 3.082609e-03

Joint ci ratio: 8.553559e-02	ci left: 2.863442e-03	ci right 3.120698e-03	k: 2093	n:700000
Cons ci ratio: 7.022989e-03	ci left: 3.069100e-01	ci right 3.090744e-01	k: 215594	n:700000
KS ci ratio: 1.161589e-01	ci left: 1.529916e-03	ci right 1.719960e-03	k: 1136	n:700000
TIGIT   700000 perm   352 sec   (1989 perm/sec)   p_kst 1.622857e-03   p_cons 3.079914e-01   p_joint 2.990000e-03

Joint ci ratio: 8.513061e-02	ci left: 2.850679e-03	ci right 3.105516e-03	k: 2113	n:710000
Cons ci ratio: 6.971511e-03	ci left: 3.070303e-01	ci right 3.091797e-01	k: 218754	n:710000
KS ci ratio: 1.152001e-01	ci left: 1.534355e-03	ci right 1.723270e-03	k: 1155	n:710000
TIGIT   710000 perm   360 sec   (1972 perm/sec)   p_kst 1.626761e-03   p_cons 3.081042e-01   p_joint 2.976056e-03

Joint ci ratio: 8.453291e-02	ci left: 2.851869e-03	ci right 3.104934e-03	k: 2143	n:720000
Cons ci ratio: 6.924080e-03	ci left: 3.069670e-01	ci right 3.091012e-01	k: 221784	n:720000
KS ci ratio: 1.141674e-01	ci left: 1.541375e-03	ci right 1.729338e-03	k: 1176	n:720000
TIGIT   720000 perm   368 sec   (1954 perm/sec)   p_kst 1.633333e-03   p_cons 3.080333e-01   p_joint 2.976389e-03

Joint ci ratio: 8.447538e-02	ci left: 2.816823e-03	ci right 3.066599e-03	k: 2146	n:730000
Cons ci ratio: 6.877405e-03	ci left: 3.069178e-01	ci right 3.090372e-01	k: 224823	n:730000
KS ci ratio: 1.133042e-01	ci left: 1.544216e-03	ci right 1.731007e-03	k: 1194	n:730000
TIGIT   730000 perm   377 sec   (1938 perm/sec)   p_kst 1.635616e-03   p_cons 3.079767e-01   p_joint 2.939726e-03

Joint ci ratio: 8.392995e-02	ci left: 2.815799e-03	ci right 3.063793e-03	k: 2174	n:740000
Cons ci ratio: 6.829821e-03	ci left: 3.069847e-01	ci right 3.090898e-01	k: 227947	n:740000
KS ci ratio: 1.127399e-01	ci left: 1.539106e-03	ci right 1.724290e-03	k: 1206	n:740000
TIGIT   740000 perm   385 sec   (1920 perm/sec)   p_kst 1.629730e-03   p_cons 3.080365e-01   p_joint 2.937838e-03

Joint ci ratio: 8.343294e-02	ci left: 2.812196e-03	ci right 3.058335e-03	k: 2200	n:750000
Cons ci ratio: 6.784314e-03	ci left: 3.069806e-01	ci right 3.090716e-01	k: 231019	n:750000
KS ci ratio: 1.121379e-01	ci left: 1.535430e-03	ci right 1.719120e-03	k: 1219	n:750000
TIGIT   750000 perm   394 sec   (1905 perm/sec)   p_kst 1.625333e-03   p_cons 3.080253e-01   p_joint 2.933333e-03

Joint ci ratio: 8.303821e-02	ci left: 2.802249e-03	ci right 3.046301e-03	k: 2221	n:760000
Cons ci ratio: 6.738789e-03	ci left: 3.070344e-01	ci right 3.091118e-01	k: 234135	n:760000
KS ci ratio: 1.113196e-01	ci left: 1.538249e-03	ci right 1.720846e-03	k: 1237	n:760000
TIGIT   760000 perm   402 sec   (1890 perm/sec)   p_kst 1.627632e-03   p_cons 3.080724e-01   p_joint 2.922368e-03

Joint ci ratio: 8.255678e-02	ci left: 2.798923e-03	ci right 3.041204e-03	k: 2247	n:770000
Cons ci ratio: 6.695066e-03	ci left: 3.070299e-01	ci right 3.090936e-01	k: 237207	n:770000
KS ci ratio: 1.107399e-01	ci left: 1.534686e-03	ci right 1.715849e-03	k: 1250	n:770000
TIGIT   770000 perm   411 sec   (1875 perm/sec)   p_kst 1.623377e-03   p_cons 3.080610e-01   p_joint 2.918182e-03

Joint ci ratio: 8.201132e-02	ci left: 2.800710e-03	ci right 3.041467e-03	k: 2277	n:780000
Cons ci ratio: 6.652023e-03	ci left: 3.070357e-01	ci right 3.090862e-01	k: 240287	n:780000
KS ci ratio: 1.099950e-01	ci left: 1.536204e-03	ci right 1.716247e-03	k: 1267	n:780000
TIGIT   780000 perm   419 sec   (1860 perm/sec)   p_kst 1.624359e-03   p_cons 3.080603e-01   p_joint 2.919231e-03

Joint ci ratio: 8.428825e-02	ci left: 2.615267e-03	ci right 2.846631e-03	k: 2156	n:790000
Cons ci ratio: 6.610408e-03	ci left: 3.070023e-01	ci right 3.090396e-01	k: 243336	n:790000
KS ci ratio: 1.093502e-01	ci left: 1.535225e-03	ci right 1.714031e-03	k: 1282	n:790000
TIGIT   790000 perm   428 sec   (1845 perm/sec)   p_kst 1.622785e-03   p_cons 3.080203e-01   p_joint 2.729114e-03

Joint ci ratio: 8.390056e-02	ci left: 2.607050e-03	ci right 2.836574e-03	k: 2176	n:800000
Cons ci ratio: 6.568909e-03	ci left: 3.070121e-01	ci right 3.090367e-01	k: 246419	n:800000
KS ci ratio: 1.087586e-01	ci left: 1.533057e-03	ci right 1.710583e-03	k: 1296	n:800000
TIGIT   800000 perm   437 sec   (1831 perm/sec)   p_kst 1.620000e-03   p_cons 3.080237e-01   p_joint 2.720000e-03

Joint ci ratio: 8.334717e-02	ci left: 2.609918e-03	ci right 2.838106e-03	k: 2205	n:810000
Cons ci ratio: 6.528258e-03	ci left: 3.070169e-01	ci right 3.090289e-01	k: 249498	n:810000
KS ci ratio: 1.079293e-01	ci left: 1.538153e-03	ci right 1.714824e-03	k: 1316	n:810000
TIGIT   810000 perm   446 sec   (1818 perm/sec)   p_kst 1.624691e-03   p_cons 3.080222e-01   p_joint 2.722222e-03

Joint ci ratio: 8.348147e-02	ci left: 2.569729e-03	ci right 2.794783e-03	k: 2198	n:820000
Cons ci ratio: 6.489448e-03	ci left: 3.069497e-01	ci right 3.089493e-01	k: 252518	n:820000
KS ci ratio: 1.069188e-01	ci left: 1.549064e-03	ci right 1.725218e-03	k: 1341	n:820000
TIGIT   820000 perm   454 sec   (1805 perm/sec)   p_kst 1.635366e-03   p_cons 3.079488e-01   p_joint 2.680488e-03

Joint ci ratio: 8.529068e-02	ci left: 2.430256e-03	ci right 2.647937e-03	k: 2106	n:830000
Cons ci ratio: 6.450501e-03	ci left: 3.069383e-01	ci right 3.089257e-01	k: 255583	n:830000
KS ci ratio: 1.063263e-01	ci left: 1.547991e-03	ci right 1.722986e-03	k: 1356	n:830000
TIGIT   830000 perm   463 sec   (1792 perm/sec)   p_kst 1.633735e-03   p_cons 3.079313e-01   p_joint 2.537349e-03

Joint ci ratio: 8.490903e-02	ci left: 2.423462e-03	ci right 2.639515e-03	k: 2125	n:840000
Cons ci ratio: 6.411476e-03	ci left: 3.069783e-01	ci right 3.089540e-01	k: 258691	n:840000
KS ci ratio: 1.057049e-01	ci left: 1.548105e-03	ci right 1.722027e-03	k: 1372	n:840000
TIGIT   840000 perm   473 sec   (1776 perm/sec)   p_kst 1.633333e-03   p_cons 3.079655e-01   p_joint 2.529762e-03

Joint ci ratio: 8.453246e-02	ci left: 2.416830e-03	ci right 2.631289e-03	k: 2144	n:850000
Cons ci ratio: 6.373891e-03	ci left: 3.069681e-01	ci right 3.089321e-01	k: 261757	n:850000
KS ci ratio: 1.053225e-01	ci left: 1.541346e-03	ci right 1.713843e-03	k: 1382	n:850000
TIGIT   850000 perm   482 sec   (1763 perm/sec)   p_kst 1.625882e-03   p_cons 3.079494e-01   p_joint 2.522353e-03

Joint ci ratio: 7.235742e-02	ci left: 3.278067e-03	ci right 3.525296e-03	k: 2924	n:860000
Cons ci ratio: 6.337563e-03	ci left: 3.069175e-01	ci right 3.088699e-01	k: 264788	n:860000
KS ci ratio: 1.048311e-01	ci left: 1.538142e-03	ci right 1.709429e-03	k: 1395	n:860000
TIGIT   860000 perm   491 sec   (1750 perm/sec)   p_kst 1.622093e-03   p_cons 3.078930e-01   p_joint 3.400000e-03

Joint ci ratio: 7.181884e-02	ci left: 3.290052e-03	ci right 3.536261e-03	k: 2968	n:870000
Cons ci ratio: 6.300406e-03	ci left: 3.069657e-01	ci right 3.089069e-01	k: 267904	n:870000
KS ci ratio: 1.040512e-01	ci left: 1.543970e-03	ci right 1.714548e-03	k: 1416	n:870000
TIGIT   870000 perm   501 sec   (1737 perm/sec)   p_kst 1.627586e-03   p_cons 3.079356e-01   p_joint 3.411494e-03

Joint ci ratio: 7.183238e-02	ci left: 3.251547e-03	ci right 3.494922e-03	k: 2967	n:880000
Cons ci ratio: 6.264211e-03	ci left: 3.069912e-01	ci right 3.089214e-01	k: 271001	n:880000
KS ci ratio: 1.032883e-01	ci left: 1.549670e-03	ci right 1.719546e-03	k: 1437	n:880000
TIGIT   880000 perm   510 sec   (1725 perm/sec)   p_kst 1.632955e-03   p_cons 3.079557e-01   p_joint 3.371591e-03

Joint ci ratio: 7.147223e-02	ci left: 3.248116e-03	ci right 3.489965e-03	k: 2997	n:890000
Cons ci ratio: 6.227813e-03	ci left: 3.070724e-01	ci right 3.089918e-01	k: 274148	n:890000
KS ci ratio: 1.027185e-01	ci left: 1.549773e-03	ci right 1.718666e-03	k: 1453	n:890000
TIGIT   890000 perm   520 sec   (1712 perm/sec)   p_kst 1.632584e-03   p_cons 3.080315e-01   p_joint 3.367416e-03

Joint ci ratio: 7.121188e-02	ci left: 3.236034e-03	ci right 3.476069e-03	k: 3019	n:900000
Cons ci ratio: 6.193558e-03	ci left: 3.070474e-01	ci right 3.089561e-01	k: 277201	n:900000
KS ci ratio: 1.021580e-01	ci left: 1.549875e-03	ci right 1.717803e-03	k: 1469	n:900000
TIGIT   900000 perm   529 sec   (1700 perm/sec)   p_kst 1.632222e-03   p_cons 3.080011e-01   p_joint 3.354444e-03

Joint ci ratio: 7.075627e-02	ci left: 3.242570e-03	ci right 3.481488e-03	k: 3058	n:910000
Cons ci ratio: 6.160212e-03	ci left: 3.069988e-01	ci right 3.088969e-01	k: 280232	n:910000
KS ci ratio: 1.016065e-01	ci left: 1.549978e-03	ci right 1.716956e-03	k: 1485	n:910000
TIGIT   910000 perm   539 sec   (1688 perm/sec)   p_kst 1.631868e-03   p_cons 3.079473e-01   p_joint 3.360440e-03

Joint ci ratio: 7.274065e-02	ci left: 3.032249e-03	ci right 3.262201e-03	k: 2894	n:920000
Cons ci ratio: 6.126180e-03	ci left: 3.070361e-01	ci right 3.089238e-01	k: 283341	n:920000
KS ci ratio: 1.013686e-01	ci left: 1.540546e-03	ci right 1.706096e-03	k: 1492	n:920000
TIGIT   920000 perm   549 sec   (1675 perm/sec)   p_kst 1.621739e-03   p_cons 3.079793e-01   p_joint 3.145652e-03

Joint ci ratio: 7.250360e-02	ci left: 3.019703e-03	ci right 3.247925e-03	k: 2913	n:930000
Cons ci ratio: 6.093397e-03	ci left: 3.070242e-01	ci right 3.089018e-01	k: 286405	n:930000
KS ci ratio: 1.006961e-01	ci left: 1.544943e-03	ci right 1.709799e-03	k: 1512	n:930000
TIGIT   930000 perm   559 sec   (1664 perm/sec)   p_kst 1.625806e-03   p_cons 3.079624e-01   p_joint 3.132258e-03

Joint ci ratio: 7.293286e-02	ci left: 2.952062e-03	ci right 3.176549e-03	k: 2879	n:940000
Cons ci ratio: 6.061907e-03	ci left: 3.069584e-01	ci right 3.088258e-01	k: 289418	n:940000
KS ci ratio: 1.002665e-01	ci left: 1.541989e-03	ci right 1.705787e-03	k: 1525	n:940000
TIGIT   940000 perm   569 sec   (1653 perm/sec)   p_kst 1.622340e-03   p_cons 3.078915e-01   p_joint 3.062766e-03

Joint ci ratio: 7.334388e-02	ci left: 2.887916e-03	ci right 3.108816e-03	k: 2847	n:950000
Cons ci ratio: 6.029157e-03	ci left: 3.070170e-01	ci right 3.088747e-01	k: 292548	n:950000
KS ci ratio: 9.990732e-02	ci left: 1.537047e-03	ci right 1.699700e-03	k: 1536	n:950000
TIGIT   950000 perm   579 sec   (1641 perm/sec)   p_kst 1.616842e-03   p_cons 3.079453e-01   p_joint 2.996842e-03

Outputting figure to mutsig2_images.part000000000175/TIGIT.4_751_950000_0.0016168_0.30795_0.0029968.png
                gene_name: TIGIT
               theta_stop: 0.100 
                    nperm: 950000 
                     p_ks: 0.0016 
        ci_ks_bounds_left: 0.0015 
       ci_ks_bounds_right: 0.0017 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.0030 
     ci_joint_bounds_left: 0.0029 
    ci_joint_bounds_right: 0.0031 

Current progress: 54 percent done.
TINAG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.062734e-02	ci left: 6.113069e-01	ci right 6.304227e-01	k: 6209	n:10000
Cons ci ratio: 2.283085e-02	ci left: 7.380550e-01	ci right 7.552011e-01	k: 7467	n:10000
KS ci ratio: 4.551311e-02	ci left: 4.160815e-01	ci right 4.355618e-01	k: 4258	n:10000
TINAG   10000 perm   2 sec   (5571 perm/sec)   p_kst 4.258000e-01   p_cons 7.467000e-01   p_joint 6.209000e-01

Outputting figure to mutsig2_images.part000000000175/TINAG.4_1475_10000_0.4258_0.7467_0.6209.png
                gene_name: TINAG
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 56 percent done.
TLR10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.540739e-03	ci left: 9.696322e-01	ci right 9.760884e-01	k: 9730	n:10000
KS ci ratio: 6.119212e-03	ci left: 9.731262e-01	ci right 9.791920e-01	k: 9763	n:10000
TLR10   10000 perm   2 sec   (5263 perm/sec)   p_kst 9.763000e-01   p_cons 9.730000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TLR10.4_2440_10000_0.9763_0.973_1.png
                gene_name: TLR10
               theta_stop: 0.0065 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
TLR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.912044e-02	ci left: 1.548277e-01	ci right 1.693697e-01	k: 1620	n:10000
Cons ci ratio: 3.821876e-02	ci left: 5.027508e-01	ci right 5.224418e-01	k: 5126	n:10000
KS ci ratio: 1.432065e-01	ci left: 6.468834e-02	ci right 7.476406e-02	k: 696	n:10000
TLR5   10000 perm   2 sec   (5002 perm/sec)   p_kst 6.960000e-02   p_cons 5.126000e-01   p_joint 1.620000e-01

Joint ci ratio: 5.833271e-02	ci left: 1.787993e-01	ci right 1.895926e-01	k: 3683	n:20000
Cons ci ratio: 2.724386e-02	ci left: 5.016457e-01	ci right 5.155518e-01	k: 10172	n:20000
KS ci ratio: 1.036835e-01	ci left: 6.323153e-02	ci right 7.019508e-02	k: 1333	n:20000
TLR5   20000 perm   4 sec   (4496 perm/sec)   p_kst 6.665000e-02   p_cons 5.086000e-01   p_joint 1.841500e-01

Joint ci ratio: 5.754259e-02	ci left: 1.300983e-01	ci right 1.378394e-01	k: 4018	n:30000
Cons ci ratio: 2.242376e-02	ci left: 4.989254e-01	ci right 5.102737e-01	k: 15138	n:30000
KS ci ratio: 8.427486e-02	ci left: 6.442489e-02	ci right 7.012592e-02	k: 2017	n:30000
TLR5   30000 perm   7 sec   (4362 perm/sec)   p_kst 6.723333e-02   p_cons 5.046000e-01   p_joint 1.339333e-01

Outputting figure to mutsig2_images.part000000000175/TLR5.4_2581_30000_0.067233_0.5046_0.13393.png
                gene_name: TLR5
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 60 percent done.
TIMP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.657465e-02	ci left: 6.758935e-01	ci right 6.941986e-01	k: 6851	n:10000
Cons ci ratio: 2.558164e-02	ci left: 6.922218e-01	ci right 7.102608e-01	k: 7013	n:10000
KS ci ratio: 4.081055e-02	ci left: 4.699653e-01	ci right 4.896465e-01	k: 4798	n:10000
TIMP3   10000 perm   2 sec   (6470 perm/sec)   p_kst 4.798000e-01   p_cons 7.013000e-01   p_joint 6.851000e-01

Outputting figure to mutsig2_images.part000000000175/TIMP3.3_656_10000_0.4798_0.7013_0.6851.png
                gene_name: TIMP3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 62 percent done.
TKT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.782385e-02	ci left: 8.211700e-01	ci right 8.360381e-01	k: 8287	n:10000
KS ci ratio: 2.885738e-02	ci left: 6.390502e-01	ci right 6.578633e-01	k: 6485	n:10000
TKT   10000 perm   2 sec   (5982 perm/sec)   p_kst 6.485000e-01   p_cons 8.287000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TKT.3_1928_10000_0.6485_0.8287_1.png
                gene_name: TKT
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
TLE3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.906111e-02	ci left: 4.918509e-01	ci right 5.115481e-01	k: 5017	n:10000
Cons ci ratio: 1.359049e-01	ci left: 7.155808e-02	ci right 8.209001e-02	k: 767	n:10000
KS ci ratio: 3.254592e-02	ci left: 5.821915e-01	ci right 6.015549e-01	k: 5919	n:10000
TLE3   10000 perm   2 sec   (5806 perm/sec)   p_kst 5.919000e-01   p_cons 7.670000e-02   p_joint 5.017000e-01

Joint ci ratio: 3.109104e-02	ci left: 4.358997e-01	ci right 4.497169e-01	k: 8856	n:20000
Cons ci ratio: 9.516495e-02	ci left: 7.446665e-02	ci right 8.195653e-02	k: 1563	n:20000
KS ci ratio: 2.283654e-02	ci left: 5.888100e-01	ci right 6.024622e-01	k: 11913	n:20000
TLE3   20000 perm   4 sec   (5096 perm/sec)   p_kst 5.956500e-01   p_cons 7.815000e-02   p_joint 4.428000e-01

Outputting figure to mutsig2_images.part000000000175/TLE3.3_2399_20000_0.59565_0.07815_0.4428.png
                gene_name: TLE3
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 67 percent done.
TLK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.063115e-02	ci left: 4.721630e-01	ci right 4.918475e-01	k: 4820	n:10000
Cons ci ratio: 1.725614e-02	ci left: 8.303250e-01	ci right 8.448778e-01	k: 8377	n:10000
KS ci ratio: 5.081322e-02	ci left: 3.635097e-01	ci right 3.825643e-01	k: 3730	n:10000
TLK2   10000 perm   2 sec   (5239 perm/sec)   p_kst 3.730000e-01   p_cons 8.377000e-01   p_joint 4.820000e-01

Outputting figure to mutsig2_images.part000000000175/TLK2.3_2337_10000_0.373_0.8377_0.482.png
                gene_name: TLK2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 69 percent done.
TM2D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.930400e-02	ci left: 4.887518e-01	ci right 5.084490e-01	k: 4986	n:10000
KS ci ratio: 4.081873e-02	ci left: 4.698654e-01	ci right 4.895465e-01	k: 4797	n:10000
TM2D2   10000 perm   2 sec   (6262 perm/sec)   p_kst 4.797000e-01   p_cons 4.986000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TM2D2.3_759_10000_0.4797_0.4986_1.png
                gene_name: TM2D2
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
TM4SF19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.515190e-03	ci left: 9.845824e-01	ci right 9.891274e-01	k: 9870	n:10000
Cons ci ratio: 1.578567e-02	ci left: 8.535544e-01	ci right 8.672349e-01	k: 8605	n:10000
KS ci ratio: 2.856056e-02	ci left: 6.437780e-01	ci right 6.625327e-01	k: 6532	n:10000
TM4SF19   10000 perm   2 sec   (6358 perm/sec)   p_kst 6.532000e-01   p_cons 8.605000e-01   p_joint 9.870000e-01

Outputting figure to mutsig2_images.part000000000175/TM4SF19.3_646_10000_0.6532_0.8605_0.987.png
                gene_name: TM4SF19
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 73 percent done.
TM6SF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.816980e-02	ci left: 3.031235e-01	ci right 3.213860e-01	k: 3122	n:10000
Cons ci ratio: 3.611692e-02	ci left: 5.309722e-01	ci right 5.506041e-01	k: 5408	n:10000
KS ci ratio: 9.042192e-02	ci left: 1.509997e-01	ci right 1.654000e-01	k: 1581	n:10000
TM6SF1   10000 perm   2 sec   (6062 perm/sec)   p_kst 1.581000e-01   p_cons 5.408000e-01   p_joint 3.122000e-01

Outputting figure to mutsig2_images.part000000000175/TM6SF1.3_1153_10000_0.1581_0.5408_0.3122.png
                gene_name: TM6SF1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 75 percent done.
TIA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.548895e-02	ci left: 5.396851e-01	ci right 5.592861e-01	k: 5495	n:10000
Cons ci ratio: 8.154618e-03	ci left: 9.545097e-01	ci right 9.624204e-01	k: 9586	n:10000
KS ci ratio: 5.524235e-02	ci left: 3.255497e-01	ci right 3.441466e-01	k: 3348	n:10000
TIA1   10000 perm   2 sec   (6509 perm/sec)   p_kst 3.348000e-01   p_cons 9.586000e-01   p_joint 5.495000e-01

Outputting figure to mutsig2_images.part000000000175/TIA1.2_1213_10000_0.3348_0.9586_0.5495.png
                gene_name: TIA1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 77 percent done.
TICAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.557553e-02	ci left: 6.923226e-01	ci right 7.103600e-01	k: 7014	n:10000
KS ci ratio: 6.751719e-02	ci left: 2.435138e-01	ci right 2.606309e-01	k: 2520	n:10000
TICAM1   10000 perm   2 sec   (5660 perm/sec)   p_kst 2.520000e-01   p_cons 7.014000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TICAM1.2_2143_10000_0.252_0.7014_1.png
                gene_name: TICAM1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
TIMM44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.208707e-02	ci left: 1.462904e-01	ci right 1.605121e-01	k: 1533	n:10000
Cons ci ratio: 1.154273e-01	ci left: 9.740099e-02	ci right 1.094311e-01	k: 1033	n:10000
KS ci ratio: 7.691072e-02	ci left: 1.982083e-01	ci right 2.141632e-01	k: 2061	n:10000
TIMM44   10000 perm   2 sec   (6276 perm/sec)   p_kst 2.061000e-01   p_cons 1.033000e-01   p_joint 1.533000e-01

Joint ci ratio: 8.540206e-02	ci left: 9.121559e-02	ci right 9.940250e-02	k: 1905	n:20000
Cons ci ratio: 8.098908e-02	ci left: 1.005877e-01	ci right 1.091276e-01	k: 2096	n:20000
KS ci ratio: 5.511802e-02	ci left: 1.962564e-01	ci right 2.074304e-01	k: 4036	n:20000
TIMM44   20000 perm   4 sec   (5461 perm/sec)   p_kst 2.018000e-01   p_cons 1.048000e-01   p_joint 9.525000e-02

Outputting figure to mutsig2_images.part000000000175/TIMM44.2_1411_20000_0.2018_0.1048_0.09525.png
                gene_name: TIMM44
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.099 

Current progress: 81 percent done.
TIMP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.540616e-01	ci left: 5.609849e-02	ci right 6.555935e-02	k: 607	n:10000
Cons ci ratio: 1.108203e-01	ci left: 1.050046e-01	ci right 1.174229e-01	k: 1111	n:10000
KS ci ratio: 1.323893e-01	ci left: 7.524035e-02	ci right 8.600545e-02	k: 805	n:10000
TIMP1   10000 perm   1 sec   (6772 perm/sec)   p_kst 8.050000e-02   p_cons 1.111000e-01   p_joint 6.070000e-02

Joint ci ratio: 1.220452e-01	ci left: 4.604902e-02	ci right 5.208294e-02	k: 980	n:20000
Cons ci ratio: 7.674209e-02	ci left: 1.109540e-01	ci right 1.198582e-01	k: 2307	n:20000
KS ci ratio: 9.361530e-02	ci left: 7.681453e-02	ci right 8.440792e-02	k: 1611	n:20000
TIMP1   20000 perm   3 sec   (5861 perm/sec)   p_kst 8.055000e-02   p_cons 1.153500e-01   p_joint 4.900000e-02

Joint ci ratio: 1.106806e-01	ci left: 3.790787e-02	ci right 4.238175e-02	k: 1203	n:30000
Cons ci ratio: 6.202383e-02	ci left: 1.138437e-01	ci right 1.211639e-01	k: 3524	n:30000
KS ci ratio: 7.577441e-02	ci left: 7.878822e-02	ci right 8.502636e-02	k: 2456	n:30000
TIMP1   30000 perm   5 sec   (5511 perm/sec)   p_kst 8.186667e-02   p_cons 1.174667e-01   p_joint 4.010000e-02

Joint ci ratio: 9.106224e-02	ci left: 4.225531e-02	ci right 4.631118e-02	k: 1770	n:40000
Cons ci ratio: 5.354026e-02	ci left: 1.150021e-01	ci right 1.213535e-01	k: 4726	n:40000
KS ci ratio: 6.545969e-02	ci left: 7.957544e-02	ci right 8.498538e-02	k: 3290	n:40000
TIMP1   40000 perm   8 sec   (5289 perm/sec)   p_kst 8.225000e-02   p_cons 1.181500e-01   p_joint 4.425000e-02

Outputting figure to mutsig2_images.part000000000175/TIMP1.2_644_40000_0.08225_0.11815_0.04425.png
                gene_name: TIMP1
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 83 percent done.
TIMP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.093325e-01	ci left: 1.076389e-01	ci right 1.201870e-01	k: 1138	n:10000
Cons ci ratio: 4.931551e-02	ci left: 3.775373e-01	ci right 3.967285e-01	k: 3871	n:10000
KS ci ratio: 2.162892e-01	ci left: 2.835310e-02	ci right 3.532314e-02	k: 317	n:10000
TIMP2   10000 perm   1 sec   (6785 perm/sec)   p_kst 3.170000e-02   p_cons 3.871000e-01   p_joint 1.138000e-01

Joint ci ratio: 6.552052e-02	ci left: 1.468036e-01	ci right 1.567979e-01	k: 3035	n:20000
Cons ci ratio: 3.459349e-02	ci left: 3.841786e-01	ci right 3.977532e-01	k: 7819	n:20000
KS ci ratio: 1.509924e-01	ci left: 3.013378e-02	ci right 3.510332e-02	k: 651	n:20000
TIMP2   20000 perm   3 sec   (5830 perm/sec)   p_kst 3.255000e-02   p_cons 3.909500e-01   p_joint 1.517500e-01

Joint ci ratio: 5.417241e-02	ci left: 1.445596e-01	ci right 1.526420e-01	k: 4457	n:30000
Cons ci ratio: 2.827112e-02	ci left: 3.850068e-01	ci right 3.960811e-01	k: 11716	n:30000
KS ci ratio: 1.220654e-01	ci left: 3.120131e-02	ci right 3.528974e-02	k: 996	n:30000
TIMP2   30000 perm   5 sec   (5494 perm/sec)   p_kst 3.320000e-02   p_cons 3.905333e-01   p_joint 1.485667e-01

Joint ci ratio: 5.410647e-02	ci left: 1.128526e-01	ci right 1.191533e-01	k: 4639	n:40000
Cons ci ratio: 2.440864e-02	ci left: 3.872112e-01	ci right 3.968044e-01	k: 15680	n:40000
KS ci ratio: 1.057670e-01	ci left: 3.144137e-02	ci right 3.497682e-02	k: 1327	n:40000
TIMP2   40000 perm   8 sec   (5289 perm/sec)   p_kst 3.317500e-02   p_cons 3.920000e-01   p_joint 1.159750e-01

Joint ci ratio: 4.261407e-02	ci left: 1.416469e-01	ci right 1.478344e-01	k: 7236	n:50000
Cons ci ratio: 2.185947e-02	ci left: 3.871184e-01	ci right 3.956942e-01	k: 19570	n:50000
KS ci ratio: 9.390127e-02	ci left: 3.209629e-02	ci right 3.527815e-02	k: 1683	n:50000
TIMP2   50000 perm   10 sec   (5113 perm/sec)   p_kst 3.366000e-02   p_cons 3.914000e-01   p_joint 1.447200e-01

Outputting figure to mutsig2_images.part000000000175/TIMP2.2_683_50000_0.03366_0.3914_0.14472.png
                gene_name: TIMP2
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 85 percent done.
TIMP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.632061e-02	ci left: 8.451935e-01	ci right 8.592007e-01	k: 8523	n:10000
Cons ci ratio: 6.726746e-02	ci left: 2.448978e-01	ci right 2.620461e-01	k: 2534	n:10000
KS ci ratio: 9.423735e-02	ci left: 1.405053e-01	ci right 1.545008e-01	k: 1474	n:10000
TIMP4   10000 perm   2 sec   (6601 perm/sec)   p_kst 1.474000e-01   p_cons 2.534000e-01   p_joint 8.523000e-01

Outputting figure to mutsig2_images.part000000000175/TIMP4.2_695_10000_0.1474_0.2534_0.8523.png
                gene_name: TIMP4
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 88 percent done.
TINAGL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.019825e-02	ci left: 2.292855e-01	ci right 2.460676e-01	k: 2376	n:10000
Cons ci ratio: 8.686029e-02	ci left: 1.618004e-01	ci right 1.765928e-01	k: 1691	n:10000
KS ci ratio: 6.247168e-02	ci left: 2.735913e-01	ci right 2.913356e-01	k: 2824	n:10000
TINAGL1   10000 perm   2 sec   (6421 perm/sec)   p_kst 2.824000e-01   p_cons 1.691000e-01   p_joint 2.376000e-01

Outputting figure to mutsig2_images.part000000000175/TINAGL1.2_1448_10000_0.2824_0.1691_0.2376.png
                gene_name: TINAGL1
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 90 percent done.
TLE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.568863e-03	ci left: 9.975272e-01	ci right 9.991602e-01	k: 9985	n:10000
KS ci ratio: 3.146594e-02	ci left: 5.984516e-01	ci right 6.176854e-01	k: 6081	n:10000
TLE2   10000 perm   2 sec   (5848 perm/sec)   p_kst 6.081000e-01   p_cons 9.985000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TLE2.2_2382_10000_0.6081_0.9985_1.png
                gene_name: TLE2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
TLR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.453391e-03	ci left: 9.703722e-01	ci right 9.767479e-01	k: 9737	n:10000
Cons ci ratio: 3.364216e-02	ci left: 5.660425e-01	ci right 5.855133e-01	k: 5758	n:10000
KS ci ratio: 1.666896e-02	ci left: 8.396916e-01	ci right 8.539057e-01	k: 8469	n:10000
TLR6   10000 perm   2 sec   (5575 perm/sec)   p_kst 8.469000e-01   p_cons 5.758000e-01   p_joint 9.737000e-01

Outputting figure to mutsig2_images.part000000000175/TLR6.2_2395_10000_0.8469_0.5758_0.9737.png
                gene_name: TLR6
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 94 percent done.
TLX1NB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.614789e-03	ci left: 9.689983e-01	ci right 9.755227e-01	k: 9724	n:10000
Cons ci ratio: 3.238453e-02	ci left: 5.845997e-01	ci right 6.039453e-01	k: 5943	n:10000
KS ci ratio: 2.432937e-02	ci left: 7.130044e-01	ci right 7.306662e-01	k: 7219	n:10000
TLX1NB   10000 perm   1 sec   (6891 perm/sec)   p_kst 7.219000e-01   p_cons 5.943000e-01   p_joint 9.724000e-01

Outputting figure to mutsig2_images.part000000000175/TLX1NB.2_373_10000_0.7219_0.5943_0.9724.png
                gene_name: TLX1NB
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 96 percent done.
TM2D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.363681e-02	ci left: 1.725141e-01	ci right 1.876728e-01	k: 1800	n:10000
Cons ci ratio: 1.842512e-01	ci left: 3.929883e-02	ci right 4.736993e-02	k: 432	n:10000
KS ci ratio: 8.549534e-02	ci left: 1.662222e-01	ci right 1.811684e-01	k: 1736	n:10000
TM2D1   10000 perm   2 sec   (6534 perm/sec)   p_kst 1.736000e-01   p_cons 4.320000e-02   p_joint 1.800000e-01

Joint ci ratio: 2.937334e-02	ci left: 4.640618e-01	ci right 4.779466e-01	k: 9420	n:20000
Cons ci ratio: 1.329584e-01	ci left: 3.887454e-02	ci right 4.445971e-02	k: 832	n:20000
KS ci ratio: 6.019328e-02	ci left: 1.696577e-01	ci right 1.802369e-01	k: 3498	n:20000
TM2D1   20000 perm   4 sec   (5691 perm/sec)   p_kst 1.749000e-01   p_cons 4.160000e-02   p_joint 4.710000e-01

Joint ci ratio: 4.840340e-02	ci left: 1.750398e-01	ci right 1.837557e-01	k: 5381	n:30000
Cons ci ratio: 1.090858e-01	ci left: 3.901127e-02	ci right 4.354478e-02	k: 1237	n:30000
KS ci ratio: 4.939613e-02	ci left: 1.691970e-01	ci right 1.777996e-01	k: 5204	n:30000
TM2D1   30000 perm   6 sec   (5343 perm/sec)   p_kst 1.734667e-01   p_cons 4.123333e-02   p_joint 1.793667e-01

Joint ci ratio: 1.923903e-02	ci left: 5.043629e-01	ci right 5.141857e-01	k: 20371	n:40000
Cons ci ratio: 9.573876e-02	ci left: 3.829598e-02	ci right 4.217113e-02	k: 1608	n:40000
KS ci ratio: 4.295450e-02	ci left: 1.686106e-01	ci right 1.760371e-01	k: 6892	n:40000
TM2D1   40000 perm   8 sec   (5171 perm/sec)   p_kst 1.723000e-01   p_cons 4.020000e-02   p_joint 5.092750e-01

Outputting figure to mutsig2_images.part000000000175/TM2D1.2_648_40000_0.1723_0.0402_0.50928.png
                gene_name: TM2D1
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.040 
      ci_cons_bounds_left: 0.038 
     ci_cons_bounds_right: 0.042 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.51 

Current progress: 98 percent done.
TM4SF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.113958e-03	ci left: 9.645717e-01	ci right 9.715522e-01	k: 9682	n:10000
KS ci ratio: 2.061858e-02	ci left: 7.750931e-01	ci right 7.913416e-01	k: 7833	n:10000
TM4SF4   10000 perm   1 sec   (7119 perm/sec)   p_kst 7.833000e-01   p_cons 9.682000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000175/TM4SF4.2_629_10000_0.7833_0.9682_1.png
                gene_name: TM4SF4
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000175
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 175 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1534>
Subject: Job 9894179: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1534>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000176> was used as the working directory.
Started at Sat Oct  6 00:32:42 2012
Results reported at Sat Oct  6 00:40:18 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000176.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000176.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 176  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000176.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    528.27 sec.
    Max Memory :      3576 MB
    Max Swap   :      5904 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
176
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 176
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 176: processing genes 15777 - 15866
Calculating significance of each gene.
Using projection method.
15777	TM7SF2	1
15778	TM7SF3	5.038122e-01
15779	TM7SF4	4.705901e-01
15780	TM9SF1	1.400087e-03
15781	TM9SF2	5.925829e-01
15782	TM9SF3	2.597463e-01
15783	TM9SF4	4.965467e-01
15784	TMBIM1	6.692573e-01
15785	TMBIM4	2.276529e-03
15786	TMBIM6	1
15787	TMC1	3.498733e-01
15788	TMC2	8.953937e-01
15789	TMC3	6.242664e-01
15790	TMC4	9.013121e-01
15791	TMC5	8.586939e-01
15792	TMC6	1
15793	TMC7	8.993477e-01
15794	TMC8	9.528356e-01
15795	TMCC1	7.859294e-02
15796	TMCC2	4.096490e-01
15797	TMCC3	2.431259e-01
15798	TMCO1	4.228531e-01
15799	TMCO2	4.623376e-02
15800	TMCO3	2.291821e-01
15801	TMCO4	1
15802	TMCO5A	5.198659e-02
15803	TMCO6	4.067454e-01
15804	TMCO7	8.758725e-01
15805	TMED1	1
15806	TMED10	5.363835e-02
15807	TMED2	1.541574e-02
15808	TMED3	5.017040e-01
15809	TMED4	6.059354e-01
15810	TMED5	2.718305e-01
15811	TMED6	1
15812	TMED7	1
15813	TMED7-TICAM2	1
15814	TMED8	4.649263e-01
15815	TMED9	6.678465e-01
15816	TMEFF1	1.792088e-03
15817	TMEFF2	3.947390e-01
15818	TMEM100	5.628948e-01
15819	TMEM101	4.605940e-01
15820	TMEM102	1
15821	TMEM104	1.049675e-01
15822	TMEM105	2.687961e-02
15823	TMEM106A	1
15824	TMEM106B	1
15825	TMEM106C	6.149325e-01
15826	TMEM107	5.772834e-01
15827	TMEM108	1.965042e-01
15828	TMEM109	2.251580e-01
15829	TMEM11	7.851454e-01
15830	TMEM110	1
15831	TMEM111	5.540119e-01
15832	TMEM115	1
15833	TMEM116	7.190205e-01
15834	TMEM117	1.015577e-01
15835	TMEM119	7.307957e-01
15836	TMEM120A	4.690059e-01
15837	TMEM120B	9.024014e-01
15838	TMEM121	1
15839	TMEM123	6.907149e-01
15840	TMEM125	6.588818e-01
15841	TMEM126A	1
15842	TMEM126B	1
15843	TMEM127	1
15844	TMEM128	1
15845	TMEM129	1
15846	TMEM130	6.734242e-01
15847	TMEM131	9.281116e-01
15848	TMEM132A	4.430424e-01
15849	TMEM132B	1.564735e-02
15850	TMEM132D	4.597984e-06
15851	TMEM132E	1.531603e-01
15852	TMEM133	3.504234e-01
15853	TMEM134	1
15854	TMEM135	1.782968e-01
15855	TMEM136	1
15856	TMEM138	4.311924e-01
15857	TMEM139	1
15858	TMEM140	4.224036e-01
15859	TMEM141	1.577413e-01
15860	TMEM143	8.932220e-01
15861	TMEM144	3.417671e-02
15862	TMEM145	9.401718e-01
15863	TMEM146	7.640750e-01
15864	TMEM147	4.887452e-01
15865	TMEM149	7.471135e-01
15866	TMEM14A	1
Done

Running MutSig 2:
Scatter job 176: processing genes 15777 - 15866
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TMEM132D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.059863e-02	ci left: 4.725626e-01	ci right 4.922477e-01	k: 4824	n:10000
Cons ci ratio: 7.879218e-02	ci left: 1.905240e-01	ci right 2.062521e-01	k: 1983	n:10000
KS ci ratio: 1.861556e-02	ci left: 8.082638e-01	ci right 8.235517e-01	k: 8160	n:10000
TMEM132D   10000 perm   3 sec   (3472 perm/sec)   p_kst 8.160000e-01   p_cons 1.983000e-01   p_joint 4.824000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM132D.23_3336_10000_0.816_0.1983_0.4824.png
                gene_name: TMEM132D
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 2 percent done.
TM9SF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.243155e-02	ci left: 5.838973e-01	ci right 6.032481e-01	k: 5936	n:10000
Cons ci ratio: 6.673845e-02	ci left: 2.478638e-01	ci right 2.650783e-01	k: 2564	n:10000
KS ci ratio: 1.029893e-02	ci left: 9.305074e-01	ci right 9.402371e-01	k: 9355	n:10000
TM9SF1   10000 perm   2 sec   (4650 perm/sec)   p_kst 9.355000e-01   p_cons 2.564000e-01   p_joint 5.936000e-01

Outputting figure to mutsig2_images.part000000000176/TM9SF1.10_1884_10000_0.9355_0.2564_0.5936.png
                gene_name: TM9SF1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 5 percent done.
TMEM132B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.703135e-02	ci left: 6.684392e-01	ci right 6.868572e-01	k: 6777	n:10000
Cons ci ratio: 1.103001e-02	ci left: 9.214164e-01	ci right 9.317334e-01	k: 9267	n:10000
KS ci ratio: 4.254207e-02	ci left: 4.492961e-01	ci right 4.689277e-01	k: 4591	n:10000
TMEM132B   10000 perm   2 sec   (4262 perm/sec)   p_kst 4.591000e-01   p_cons 9.267000e-01   p_joint 6.777000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM132B.10_3273_10000_0.4591_0.9267_0.6777.png
                gene_name: TMEM132B
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 7 percent done.
TMEFF1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.353212e-02	ci left: 5.676469e-01	ci right 5.871080e-01	k: 5774	n:10000
Cons ci ratio: 2.741570e-02	ci left: 6.621957e-01	ci right 6.807043e-01	k: 6715	n:10000
KS ci ratio: 6.035235e-02	ci left: 2.876580e-01	ci right 3.056606e-01	k: 2966	n:10000
TMEFF1   10000 perm   2 sec   (6014 perm/sec)   p_kst 2.966000e-01   p_cons 6.715000e-01   p_joint 5.774000e-01

Outputting figure to mutsig2_images.part000000000176/TMEFF1.7_1183_10000_0.2966_0.6715_0.5774.png
                gene_name: TMEFF1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 10 percent done.
TMEM132E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.965007e-02	ci left: 1.272828e-01	ci right 1.407312e-01	k: 1339	n:10000
Cons ci ratio: 5.772592e-02	ci left: 3.063966e-01	ci right 3.247110e-01	k: 3155	n:10000
KS ci ratio: 1.483020e-01	ci left: 6.043844e-02	ci right 7.021664e-02	k: 652	n:10000
TMEM132E   10000 perm   2 sec   (4360 perm/sec)   p_kst 6.520000e-02   p_cons 3.155000e-01   p_joint 1.339000e-01

Joint ci ratio: 8.813772e-02	ci left: 8.601960e-02	ci right 9.400006e-02	k: 1799	n:20000
Cons ci ratio: 3.996947e-02	ci left: 3.182112e-01	ci right 3.312398e-01	k: 6494	n:20000
KS ci ratio: 1.057364e-01	ci left: 6.089032e-02	ci right 6.773701e-02	k: 1285	n:20000
TMEM132E   20000 perm   5 sec   (4010 perm/sec)   p_kst 6.425000e-02   p_cons 3.247000e-01   p_joint 8.995000e-02

Joint ci ratio: 7.183314e-02	ci left: 8.704707e-02	ci right 9.356585e-02	k: 2708	n:30000
Cons ci ratio: 3.260149e-02	ci left: 3.198664e-01	ci right 3.305008e-01	k: 9755	n:30000
KS ci ratio: 8.667064e-02	ci left: 6.106012e-02	ci right 6.662471e-02	k: 1914	n:30000
TMEM132E   30000 perm   8 sec   (3906 perm/sec)   p_kst 6.380000e-02   p_cons 3.251667e-01   p_joint 9.026667e-02

Outputting figure to mutsig2_images.part000000000176/TMEM132E.8_2995_30000_0.0638_0.32517_0.090267.png
                gene_name: TMEM132E
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.061 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.094 

Current progress: 12 percent done.
TMCO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.203654e-02	ci left: 5.898183e-01	ci right 6.091237e-01	k: 5995	n:10000
Cons ci ratio: 5.110775e-02	ci left: 3.608245e-01	ci right 3.798511e-01	k: 3703	n:10000
KS ci ratio: 2.134564e-02	ci left: 7.629399e-01	ci right 7.795018e-01	k: 7713	n:10000
TMCO3   10000 perm   2 sec   (5369 perm/sec)   p_kst 7.713000e-01   p_cons 3.703000e-01   p_joint 5.995000e-01

Outputting figure to mutsig2_images.part000000000176/TMCO3.6_2082_10000_0.7713_0.3703_0.5995.png
                gene_name: TMCO3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 14 percent done.
TMEM132A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.139339e-02	ci left: 5.995561e-01	ci right 6.187803e-01	k: 6092	n:10000
Cons ci ratio: 4.209097e-02	ci left: 4.545866e-01	ci right 4.742341e-01	k: 4644	n:10000
KS ci ratio: 3.912365e-02	ci left: 4.910511e-01	ci right 5.107483e-01	k: 5009	n:10000
TMEM132A   10000 perm   2 sec   (4820 perm/sec)   p_kst 5.009000e-01   p_cons 4.644000e-01   p_joint 6.092000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM132A.6_3119_10000_0.5009_0.4644_0.6092.png
                gene_name: TMEM132A
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 17 percent done.
TM9SF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.229991e-02	ci left: 7.469526e-01	ci right 7.638984e-01	k: 7555	n:10000
Cons ci ratio: 2.481456e-02	ci left: 7.049308e-01	ci right 7.227445e-01	k: 7139	n:10000
KS ci ratio: 3.629176e-02	ci left: 5.285691e-01	ci right 5.482085e-01	k: 5384	n:10000
TM9SF3   10000 perm   2 sec   (5561 perm/sec)   p_kst 5.384000e-01   p_cons 7.139000e-01   p_joint 7.555000e-01

Outputting figure to mutsig2_images.part000000000176/TM9SF3.5_1830_10000_0.5384_0.7139_0.7555.png
                gene_name: TM9SF3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 19 percent done.
TMC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.517473e-02	ci left: 5.440928e-01	ci right 5.636758e-01	k: 5539	n:10000
Cons ci ratio: 5.088933e-02	ci left: 3.628135e-01	ci right 3.818609e-01	k: 3723	n:10000
KS ci ratio: 4.859582e-02	ci left: 3.845045e-01	ci right 4.037572e-01	k: 3941	n:10000
TMC3   10000 perm   2 sec   (4731 perm/sec)   p_kst 3.941000e-01   p_cons 3.723000e-01   p_joint 5.539000e-01

Outputting figure to mutsig2_images.part000000000176/TMC3.5_3391_10000_0.3941_0.3723_0.5539.png
                gene_name: TMC3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 21 percent done.
TMCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.359337e-02	ci left: 4.372220e-01	ci right 4.568089e-01	k: 4470	n:10000
Cons ci ratio: 6.851645e-02	ci left: 2.380779e-01	ci right 2.550700e-01	k: 2465	n:10000
KS ci ratio: 1.842321e-02	ci left: 8.114128e-01	ci right 8.266008e-01	k: 8191	n:10000
TMCC1   10000 perm   2 sec   (5581 perm/sec)   p_kst 8.191000e-01   p_cons 2.465000e-01   p_joint 4.470000e-01

Outputting figure to mutsig2_images.part000000000176/TMCC1.5_1978_10000_0.8191_0.2465_0.447.png
                gene_name: TMCC1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 24 percent done.
TMCC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.343944e-01	ci left: 7.310807e-02	ci right 8.373906e-02	k: 783	n:10000
Cons ci ratio: 2.135306e-01	ci left: 2.911124e-02	ci right 3.616447e-02	k: 325	n:10000
KS ci ratio: 4.877944e-02	ci left: 3.827127e-01	ci right 4.019500e-01	k: 3923	n:10000
TMCC3   10000 perm   1 sec   (6731 perm/sec)   p_kst 3.923000e-01   p_cons 3.250000e-02   p_joint 7.830000e-02

Joint ci ratio: 8.723533e-02	ci left: 8.768580e-02	ci right 9.573336e-02	k: 1833	n:20000
Cons ci ratio: 1.538196e-01	ci left: 2.902635e-02	ci right 3.391111e-02	k: 628	n:20000
KS ci ratio: 3.476845e-02	ci left: 3.817864e-01	ci right 3.953460e-01	k: 7771	n:20000
TMCC3   20000 perm   3 sec   (5829 perm/sec)   p_kst 3.885500e-01   p_cons 3.140000e-02   p_joint 9.165000e-02

Joint ci ratio: 7.135640e-02	ci left: 8.812924e-02	ci right 9.468347e-02	k: 2741	n:30000
Cons ci ratio: 1.269551e-01	ci left: 2.884147e-02	ci right 3.278342e-02	k: 923	n:30000
KS ci ratio: 2.837233e-02	ci left: 3.833113e-01	ci right 3.943769e-01	k: 11665	n:30000
TMCC3   30000 perm   5 sec   (5506 perm/sec)   p_kst 3.888333e-01   p_cons 3.076667e-02   p_joint 9.136667e-02

Joint ci ratio: 7.514311e-02	ci left: 6.130139e-02	ci right 6.611219e-02	k: 2547	n:40000
Cons ci ratio: 1.089023e-01	ci left: 2.966386e-02	ci right 3.310462e-02	k: 1254	n:40000
KS ci ratio: 2.454617e-02	ci left: 3.845423e-01	ci right 3.941238e-01	k: 15573	n:40000
TMCC3   40000 perm   8 sec   (5295 perm/sec)   p_kst 3.893250e-01   p_cons 3.135000e-02   p_joint 6.367500e-02

Joint ci ratio: 5.745086e-02	ci left: 8.272759e-02	ci right 8.764070e-02	k: 4258	n:50000
Cons ci ratio: 9.759018e-02	ci left: 2.973241e-02	ci right 3.280232e-02	k: 1562	n:50000
KS ci ratio: 2.201256e-02	ci left: 3.838052e-01	ci right 3.923678e-01	k: 19404	n:50000
TMCC3   50000 perm   10 sec   (5132 perm/sec)   p_kst 3.880800e-01   p_cons 3.124000e-02   p_joint 8.516000e-02

Outputting figure to mutsig2_images.part000000000176/TMCC3.5_1450_50000_0.38808_0.03124_0.08516.png
                gene_name: TMCC3
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.088 

Current progress: 26 percent done.
TMEM104
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.295844e-02	ci left: 5.760717e-01	ci right 5.954783e-01	k: 5858	n:10000
Cons ci ratio: 4.753408e-02	ci left: 3.950588e-01	ci right 4.143968e-01	k: 4047	n:10000
KS ci ratio: 3.743866e-02	ci left: 5.130550e-01	ci right 5.327317e-01	k: 5229	n:10000
TMEM104   10000 perm   2 sec   (5509 perm/sec)   p_kst 5.229000e-01   p_cons 4.047000e-01   p_joint 5.858000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM104.5_1527_10000_0.5229_0.4047_0.5858.png
                gene_name: TMEM104
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 29 percent done.
TMBIM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.751719e-02	ci left: 2.435138e-01	ci right 2.606309e-01	k: 2520	n:10000
Cons ci ratio: 1.868988e-02	ci left: 8.070450e-01	ci right 8.223712e-01	k: 8148	n:10000
KS ci ratio: 1.179233e-01	ci left: 9.360310e-02	ci right 1.054314e-01	k: 994	n:10000
TMBIM4   10000 perm   2 sec   (5848 perm/sec)   p_kst 9.940000e-02   p_cons 8.148000e-01   p_joint 2.520000e-01

Joint ci ratio: 4.745907e-02	ci left: 2.482759e-01	ci right 2.603956e-01	k: 5086	n:20000
Cons ci ratio: 1.345776e-02	ci left: 8.037351e-01	ci right 8.146749e-01	k: 16185	n:20000
KS ci ratio: 8.542683e-02	ci left: 9.116655e-02	ci right 9.935156e-02	k: 1904	n:20000
TMBIM4   20000 perm   4 sec   (5300 perm/sec)   p_kst 9.520000e-02   p_cons 8.092500e-01   p_joint 2.543000e-01

Outputting figure to mutsig2_images.part000000000176/TMBIM4.4_745_20000_0.0952_0.80925_0.2543.png
                gene_name: TMBIM4
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 31 percent done.
TMC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.082601e-03	ci left: 9.552412e-01	ci right 9.630885e-01	k: 9593	n:10000
Cons ci ratio: 3.385608e-02	ci left: 5.629343e-01	ci right 5.824233e-01	k: 5727	n:10000
KS ci ratio: 1.304874e-02	ci left: 8.942609e-01	ci right 9.061049e-01	k: 9003	n:10000
TMC1   10000 perm   2 sec   (5639 perm/sec)   p_kst 9.003000e-01   p_cons 5.727000e-01   p_joint 9.593000e-01

Outputting figure to mutsig2_images.part000000000176/TMC1.4_2363_10000_0.9003_0.5727_0.9593.png
                gene_name: TMC1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.96 

Current progress: 33 percent done.
TMC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.921266e-02	ci left: 6.334184e-01	ci right 6.522983e-01	k: 6429	n:10000
Cons ci ratio: 4.647540e-02	ci left: 4.059166e-01	ci right 4.253326e-01	k: 4156	n:10000
KS ci ratio: 5.664796e-02	ci left: 3.145320e-01	ci right 3.329708e-01	k: 3237	n:10000
TMC5   10000 perm   2 sec   (5115 perm/sec)   p_kst 3.237000e-01   p_cons 4.156000e-01   p_joint 6.429000e-01

Outputting figure to mutsig2_images.part000000000176/TMC5.4_3415_10000_0.3237_0.4156_0.6429.png
                gene_name: TMC5
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 36 percent done.
TMCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.079670e-02	ci left: 6.086951e-01	ci right 6.278360e-01	k: 6183	n:10000
KS ci ratio: 2.817083e-02	ci left: 6.500161e-01	ci right 6.686910e-01	k: 6594	n:10000
TMCC2   10000 perm   2 sec   (5795 perm/sec)   p_kst 6.594000e-01   p_cons 6.183000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000176/TMCC2.4_2150_10000_0.6594_0.6183_1.png
                gene_name: TMCC2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
TMCO7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.363793e-02	ci left: 2.126039e-01	ci right 2.289591e-01	k: 2207	n:10000
Cons ci ratio: 4.034749e-02	ci left: 4.756597e-01	ci right 4.953487e-01	k: 4855	n:10000
KS ci ratio: 1.034263e-01	ci left: 1.190667e-01	ci right 1.321523e-01	k: 1255	n:10000
TMCO7   10000 perm   2 sec   (4251 perm/sec)   p_kst 1.255000e-01   p_cons 4.855000e-01   p_joint 2.207000e-01

Joint ci ratio: 4.464208e-02	ci left: 2.719972e-01	ci right 2.844673e-01	k: 5564	n:20000
Cons ci ratio: 2.856649e-02	ci left: 4.779513e-01	ci right 4.918531e-01	k: 9698	n:20000
KS ci ratio: 7.418545e-02	ci left: 1.179371e-01	ci right 1.270730e-01	k: 2449	n:20000
TMCO7   20000 perm   5 sec   (3980 perm/sec)   p_kst 1.224500e-01   p_cons 4.849000e-01   p_joint 2.782000e-01

Outputting figure to mutsig2_images.part000000000176/TMCO7.4_3357_20000_0.12245_0.4849_0.2782.png
                gene_name: TMCO7
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 40 percent done.
TMED10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.561441e-02	ci left: 8.562070e-01	ci right 8.697808e-01	k: 8631	n:10000
Cons ci ratio: 4.007393e-02	ci left: 4.790570e-01	ci right 4.987494e-01	k: 4889	n:10000
KS ci ratio: 2.027211e-02	ci left: 7.808694e-01	ci right 7.969620e-01	k: 7890	n:10000
TMED10   10000 perm   2 sec   (6607 perm/sec)   p_kst 7.890000e-01   p_cons 4.889000e-01   p_joint 8.631000e-01

Outputting figure to mutsig2_images.part000000000176/TMED10.4_680_10000_0.789_0.4889_0.8631.png
                gene_name: TMED10
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 43 percent done.
TMED2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.977580e-02	ci left: 3.731590e-01	ci right 3.923094e-01	k: 3827	n:10000
Cons ci ratio: 4.147853e-02	ci left: 4.618753e-01	ci right 4.815412e-01	k: 4717	n:10000
KS ci ratio: 8.181399e-02	ci left: 1.790063e-01	ci right 1.943767e-01	k: 1866	n:10000
TMED2   10000 perm   2 sec   (6103 perm/sec)   p_kst 1.866000e-01   p_cons 4.717000e-01   p_joint 3.827000e-01

Outputting figure to mutsig2_images.part000000000176/TMED2.4_622_10000_0.1866_0.4717_0.3827.png
                gene_name: TMED2
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 45 percent done.
TMEFF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.630829e-02	ci left: 1.635689e-01	ci right 1.784233e-01	k: 1709	n:10000
Cons ci ratio: 1.315040e-01	ci left: 7.620996e-02	ci right 8.703524e-02	k: 815	n:10000
KS ci ratio: 1.168825e-01	ci left: 9.516088e-02	ci right 1.070726e-01	k: 1010	n:10000
TMEFF2   10000 perm   2 sec   (6040 perm/sec)   p_kst 1.010000e-01   p_cons 8.150000e-02   p_joint 1.709000e-01

Joint ci ratio: 1.205030e-01	ci left: 4.721434e-02	ci right 5.331725e-02	k: 1004	n:20000
Cons ci ratio: 9.367852e-02	ci left: 7.671668e-02	ci right 8.430580e-02	k: 1609	n:20000
KS ci ratio: 8.285527e-02	ci left: 9.646450e-02	ci right 1.048520e-01	k: 2012	n:20000
TMEFF2   20000 perm   4 sec   (5331 perm/sec)   p_kst 1.006000e-01   p_cons 8.045000e-02   p_joint 5.020000e-02

Joint ci ratio: 6.377958e-02	ci left: 1.082552e-01	ci right 1.154202e-01	k: 3354	n:30000
Cons ci ratio: 7.779236e-02	ci left: 7.498971e-02	ci right 8.109230e-02	k: 2340	n:30000
KS ci ratio: 6.679990e-02	ci left: 9.951666e-02	ci right 1.064271e-01	k: 3088	n:30000
TMEFF2   30000 perm   6 sec   (5017 perm/sec)   p_kst 1.029333e-01   p_cons 7.800000e-02   p_joint 1.118000e-01

Outputting figure to mutsig2_images.part000000000176/TMEFF2.4_1165_30000_0.10293_0.078_0.1118.png
                gene_name: TMEFF2
               theta_stop: 0.078 
                    nperm: 30000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.100 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.081 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 48 percent done.
TMEM117
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.331963e-02	ci left: 5.707557e-01	ci right 5.901974e-01	k: 5805	n:10000
Cons ci ratio: 1.422396e-02	ci left: 8.772546e-01	ci right 8.899209e-01	k: 8837	n:10000
KS ci ratio: 4.313783e-02	ci left: 4.424102e-01	ci right 4.620177e-01	k: 4522	n:10000
TMEM117   10000 perm   2 sec   (5554 perm/sec)   p_kst 4.522000e-01   p_cons 8.837000e-01   p_joint 5.805000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM117.4_1573_10000_0.4522_0.8837_0.5805.png
                gene_name: TMEM117
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 50 percent done.
TMEM131
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.093336e-02	ci left: 4.684669e-01	ci right 4.881457e-01	k: 4783	n:10000
Cons ci ratio: 2.061858e-02	ci left: 7.750931e-01	ci right 7.913416e-01	k: 7833	n:10000
KS ci ratio: 5.040300e-02	ci left: 3.672894e-01	ci right 3.863825e-01	k: 3768	n:10000
TMEM131   10000 perm   2 sec   (4083 perm/sec)   p_kst 3.768000e-01   p_cons 7.833000e-01   p_joint 4.783000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM131.4_5816_10000_0.3768_0.7833_0.4783.png
                gene_name: TMEM131
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 52 percent done.
TMEM144
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.155970e-02	ci left: 2.795337e-01	ci right 2.973897e-01	k: 2884	n:10000
Cons ci ratio: 1.243397e-01	ci left: 8.475243e-02	ci right 9.608748e-02	k: 903	n:10000
KS ci ratio: 6.796773e-03	ci left: 9.674153e-01	ci right 9.741067e-01	k: 9709	n:10000
TMEM144   10000 perm   2 sec   (6484 perm/sec)   p_kst 9.709000e-01   p_cons 9.030000e-02   p_joint 2.884000e-01

Joint ci ratio: 3.303242e-02	ci left: 4.063139e-01	ci right 4.200114e-01	k: 8263	n:20000
Cons ci ratio: 8.587598e-02	ci left: 9.028394e-02	ci right 9.843443e-02	k: 1886	n:20000
KS ci ratio: 4.776897e-03	ci left: 9.687876e-01	ci right 9.734741e-01	k: 19424	n:20000
TMEM144   20000 perm   4 sec   (5600 perm/sec)   p_kst 9.712000e-01   p_cons 9.430000e-02   p_joint 4.131500e-01

Outputting figure to mutsig2_images.part000000000176/TMEM144.4_1082_20000_0.9712_0.0943_0.41315.png
                gene_name: TMEM144
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.42 

Current progress: 55 percent done.
TM7SF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.504683e-02	ci left: 5.458961e-01	ci right 5.654714e-01	k: 5557	n:10000
KS ci ratio: 9.234243e-03	ci left: 9.429466e-01	ci right 9.517905e-01	k: 9475	n:10000
TM7SF3   10000 perm   2 sec   (5556 perm/sec)   p_kst 9.475000e-01   p_cons 5.557000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000176/TM7SF3.3_1761_10000_0.9475_0.5557_1.png
                gene_name: TM7SF3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
TM7SF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.832145e-02	ci left: 6.476011e-01	ci right 6.663073e-01	k: 6570	n:10000
Cons ci ratio: 4.852468e-02	ci left: 3.852013e-01	ci right 4.044600e-01	k: 3948	n:10000
KS ci ratio: 1.600840e-02	ci left: 8.500867e-01	ci right 8.639046e-01	k: 8571	n:10000
TM7SF4   10000 perm   2 sec   (6005 perm/sec)   p_kst 8.571000e-01   p_cons 3.948000e-01   p_joint 6.570000e-01

Outputting figure to mutsig2_images.part000000000176/TM7SF4.3_1425_10000_0.8571_0.3948_0.657.png
                gene_name: TM7SF4
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 60 percent done.
TM9SF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.242615e-02	ci left: 3.490931e-01	ci right 3.679893e-01	k: 3585	n:10000
Cons ci ratio: 1.980390e-01	ci left: 3.395684e-02	ci right 4.151552e-02	k: 376	n:10000
KS ci ratio: 6.371172e-02	ci left: 2.657701e-01	ci right 2.833614e-01	k: 2745	n:10000
TM9SF2   10000 perm   2 sec   (5694 perm/sec)   p_kst 2.745000e-01   p_cons 3.760000e-02   p_joint 3.585000e-01

Joint ci ratio: 4.373180e-02	ci left: 2.802900e-01	ci right 2.928721e-01	k: 5731	n:20000
Cons ci ratio: 1.413087e-01	ci left: 3.442644e-02	ci right 3.970925e-02	k: 740	n:20000
KS ci ratio: 4.494971e-02	ci left: 2.692666e-01	ci right 2.816987e-01	k: 5509	n:20000
TM9SF2   20000 perm   4 sec   (4919 perm/sec)   p_kst 2.754500e-01   p_cons 3.700000e-02   p_joint 2.865500e-01

Joint ci ratio: 3.922419e-02	ci left: 2.448429e-01	ci right 2.546723e-01	k: 7492	n:30000
Cons ci ratio: 1.161681e-01	ci left: 3.443865e-02	ci right 3.871837e-02	k: 1096	n:30000
KS ci ratio: 3.676274e-02	ci left: 2.697538e-01	ci right 2.798899e-01	k: 8244	n:30000
TM9SF2   30000 perm   6 sec   (4710 perm/sec)   p_kst 2.748000e-01   p_cons 3.653333e-02   p_joint 2.497333e-01

Joint ci ratio: 3.681422e-02	ci left: 2.167679e-01	ci right 2.249227e-01	k: 8833	n:40000
Cons ci ratio: 1.088128e-01	ci left: 2.971253e-02	ci right 3.315593e-02	k: 1256	n:40000
KS ci ratio: 3.178633e-02	ci left: 2.710759e-01	ci right 2.798567e-01	k: 11018	n:40000
TM9SF2   40000 perm   9 sec   (4547 perm/sec)   p_kst 2.754500e-01   p_cons 3.140000e-02   p_joint 2.208250e-01

Joint ci ratio: 2.806855e-02	ci left: 2.766647e-01	ci right 2.845608e-01	k: 14030	n:50000
Cons ci ratio: 9.788146e-02	ci left: 2.955668e-02	ci right 3.261808e-02	k: 1553	n:50000
KS ci ratio: 2.847444e-02	ci left: 2.709301e-01	ci right 2.787761e-01	k: 13742	n:50000
TM9SF2   50000 perm   11 sec   (4386 perm/sec)   p_kst 2.748400e-01   p_cons 3.106000e-02   p_joint 2.806000e-01

Outputting figure to mutsig2_images.part000000000176/TM9SF2.3_2060_50000_0.27484_0.03106_0.2806.png
                gene_name: TM9SF2
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.28 

Current progress: 62 percent done.
TM9SF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.747163e-02	ci left: 6.612896e-01	ci right 6.798110e-01	k: 6706	n:10000
KS ci ratio: 7.463565e-03	ci left: 9.613148e-01	ci right 9.686110e-01	k: 9651	n:10000
TM9SF4   10000 perm   2 sec   (5489 perm/sec)   p_kst 9.651000e-01   p_cons 6.706000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000176/TM9SF4.3_2001_10000_0.9651_0.6706_1.png
                gene_name: TM9SF4
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
TMC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.647580e-02	ci left: 8.427478e-01	ci right 8.568478e-01	k: 8499	n:10000
Cons ci ratio: 9.381559e-03	ci left: 9.412847e-01	ci right 9.502533e-01	k: 9459	n:10000
KS ci ratio: 4.191375e-02	ci left: 4.566832e-01	ci right 4.763364e-01	k: 4665	n:10000
TMC4   10000 perm   2 sec   (5701 perm/sec)   p_kst 4.665000e-01   p_cons 9.459000e-01   p_joint 8.499000e-01

Outputting figure to mutsig2_images.part000000000176/TMC4.3_2199_10000_0.4665_0.9459_0.8499.png
                gene_name: TMC4
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 67 percent done.
TMCO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.725154e-02	ci left: 5.155566e-01	ci right 5.352286e-01	k: 5254	n:10000
Cons ci ratio: 4.721013e-02	ci left: 3.983455e-01	ci right 4.177081e-01	k: 4080	n:10000
KS ci ratio: 5.764585e-02	ci left: 3.069917e-01	ci right 3.253155e-01	k: 3161	n:10000
TMCO2   10000 perm   2 sec   (6569 perm/sec)   p_kst 3.161000e-01   p_cons 4.080000e-01   p_joint 5.254000e-01

Outputting figure to mutsig2_images.part000000000176/TMCO2.3_557_10000_0.3161_0.408_0.5254.png
                gene_name: TMCO2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 69 percent done.
TMCO5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.576435e-02	ci left: 1.653377e-01	ci right 1.802534e-01	k: 1727	n:10000
Cons ci ratio: 9.131878e-03	ci left: 9.440897e-01	ci right 9.528467e-01	k: 9486	n:10000
KS ci ratio: 1.610905e-01	ci left: 5.138109e-02	ci right 6.047977e-02	k: 558	n:10000
TMCO5A   10000 perm   2 sec   (6640 perm/sec)   p_kst 5.580000e-02   p_cons 9.486000e-01   p_joint 1.727000e-01

Joint ci ratio: 6.942116e-02	ci left: 1.327060e-01	ci right 1.422997e-01	k: 2749	n:20000
Cons ci ratio: 6.494313e-03	ci left: 9.448322e-01	ci right 9.510368e-01	k: 18960	n:20000
KS ci ratio: 1.154500e-01	ci left: 5.134529e-02	ci right 5.768501e-02	k: 1089	n:20000
TMCO5A   20000 perm   3 sec   (5793 perm/sec)   p_kst 5.445000e-02   p_cons 9.480000e-01   p_joint 1.374500e-01

Joint ci ratio: 5.961513e-02	ci left: 1.221987e-01	ci right 1.297406e-01	k: 3778	n:30000
Cons ci ratio: 5.255174e-03	ci left: 9.463137e-01	ci right 9.513323e-01	k: 28466	n:30000
KS ci ratio: 9.417389e-02	ci left: 5.202303e-02	ci right 5.719698e-02	k: 1637	n:30000
TMCO5A   30000 perm   5 sec   (5475 perm/sec)   p_kst 5.456667e-02   p_cons 9.488667e-01   p_joint 1.259333e-01

Outputting figure to mutsig2_images.part000000000176/TMCO5A.3_907_30000_0.054567_0.94887_0.12593.png
                gene_name: TMCO5A
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 71 percent done.
TMCO6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.144526e-02	ci left: 4.622748e-01	ci right 4.819415e-01	k: 4721	n:10000
Cons ci ratio: 8.046551e-02	ci left: 1.840255e-01	ci right 1.995545e-01	k: 1917	n:10000
KS ci ratio: 4.600038e-02	ci left: 4.108988e-01	ci right 4.303474e-01	k: 4206	n:10000
TMCO6   10000 perm   2 sec   (5819 perm/sec)   p_kst 4.206000e-01   p_cons 1.917000e-01   p_joint 4.721000e-01

Outputting figure to mutsig2_images.part000000000176/TMCO6.3_1530_10000_0.4206_0.1917_0.4721.png
                gene_name: TMCO6
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 74 percent done.
TMEM105
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.626109e-02	ci left: 6.810325e-01	ci right 6.992566e-01	k: 6902	n:10000
Cons ci ratio: 4.829198e-02	ci left: 3.874911e-01	ci right 4.067689e-01	k: 3971	n:10000
KS ci ratio: 1.691880e-02	ci left: 8.357199e-01	ci right 8.500797e-01	k: 8430	n:10000
TMEM105   10000 perm   1 sec   (6726 perm/sec)   p_kst 8.430000e-01   p_cons 3.971000e-01   p_joint 6.902000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM105.3_398_10000_0.843_0.3971_0.6902.png
                gene_name: TMEM105
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 76 percent done.
TMEM108
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.122226e-02	ci left: 6.021669e-01	ci right 6.213680e-01	k: 6118	n:10000
Cons ci ratio: 6.139518e-02	ci left: 2.806233e-01	ci right 2.984994e-01	k: 2895	n:10000
KS ci ratio: 2.457788e-02	ci left: 7.088662e-01	ci right 7.266068e-01	k: 7178	n:10000
TMEM108   10000 perm   2 sec   (5663 perm/sec)   p_kst 7.178000e-01   p_cons 2.895000e-01   p_joint 6.118000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM108.3_1744_10000_0.7178_0.2895_0.6118.png
                gene_name: TMEM108
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 79 percent done.
TMEM135
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.038162e-02	ci left: 7.790450e-01	ci right 7.951874e-01	k: 7872	n:10000
Cons ci ratio: 4.549450e-02	ci left: 4.162808e-01	ci right 4.357623e-01	k: 4260	n:10000
KS ci ratio: 2.238439e-02	ci left: 7.455367e-01	ci right 7.625150e-01	k: 7541	n:10000
TMEM135   10000 perm   2 sec   (5723 perm/sec)   p_kst 7.541000e-01   p_cons 4.260000e-01   p_joint 7.872000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM135.3_1437_10000_0.7541_0.426_0.7872.png
                gene_name: TMEM135
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 81 percent done.
TMEM146
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.863152e-02	ci left: 1.563004e-01	ci right 1.708961e-01	k: 1635	n:10000
Cons ci ratio: 9.382733e-02	ci left: 1.415836e-01	ci right 1.556218e-01	k: 1485	n:10000
KS ci ratio: 6.563685e-02	ci left: 2.541932e-01	ci right 2.715451e-01	k: 2628	n:10000
TMEM146   10000 perm   2 sec   (5574 perm/sec)   p_kst 2.628000e-01   p_cons 1.485000e-01   p_joint 1.635000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM146.3_2485_10000_0.2628_0.1485_0.1635.png
                gene_name: TMEM146
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 83 percent done.
TMC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.541574e-02	ci left: 8.592688e-01	ci right 8.727172e-01	k: 8661	n:10000
Cons ci ratio: 7.435137e-02	ci left: 2.093488e-01	ci right 2.256161e-01	k: 2174	n:10000
KS ci ratio: 2.043162e-01	ci left: 3.186407e-02	ci right 3.920972e-02	k: 354	n:10000
TMC2   10000 perm   2 sec   (5578 perm/sec)   p_kst 3.540000e-02   p_cons 2.174000e-01   p_joint 8.661000e-01

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 5.400555e-02	ci left: 2.028381e-01	ci right 2.141467e-01	k: 4169	n:20000
KS ci ratio: 1.403283e-01	ci left: 3.490943e-02	ci right 4.022610e-02	k: 750	n:20000
TMC2   20000 perm   4 sec   (4880 perm/sec)   p_kst 3.750000e-02   p_cons 2.084500e-01   p_joint 1

Joint ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
Cons ci ratio: 4.417583e-02	ci left: 2.032867e-01	ci right 2.125033e-01	k: 6236	n:30000
KS ci ratio: 1.109208e-01	ci left: 3.774564e-02	ci right 4.221067e-02	k: 1198	n:30000
TMC2   30000 perm   6 sec   (4633 perm/sec)   p_kst 3.993333e-02   p_cons 2.078667e-01   p_joint 1

Joint ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
Cons ci ratio: 3.828072e-02	ci left: 2.037086e-01	ci right 2.116839e-01	k: 8307	n:40000
KS ci ratio: 9.506362e-02	ci left: 3.883338e-02	ci right 4.273365e-02	k: 1630	n:40000
TMC2   40000 perm   9 sec   (4489 perm/sec)   p_kst 4.075000e-02   p_cons 2.076750e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000176/TMC2.2_2801_40000_0.04075_0.20767_1.png
                gene_name: TMC2
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
TMED3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.502186e-02	ci left: 1.677948e-01	ci right 1.827948e-01	k: 1752	n:10000
Cons ci ratio: 9.759937e-02	ci left: 1.320796e-01	ci right 1.457315e-01	k: 1388	n:10000
KS ci ratio: 3.776252e-02	ci left: 5.087527e-01	ci right 5.284364e-01	k: 5186	n:10000
TMED3   10000 perm   2 sec   (6360 perm/sec)   p_kst 5.186000e-01   p_cons 1.388000e-01   p_joint 1.752000e-01

Outputting figure to mutsig2_images.part000000000176/TMED3.2_666_10000_0.5186_0.1388_0.1752.png
                gene_name: TMED3
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 88 percent done.
TMED5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.212491e-02	ci left: 7.498858e-01	ci right 7.667635e-01	k: 7584	n:10000
Cons ci ratio: 5.925716e-02	ci left: 2.952901e-01	ci right 3.134240e-01	k: 3043	n:10000
KS ci ratio: 5.915936e-02	ci left: 2.959840e-01	ci right 3.141297e-01	k: 3050	n:10000
TMED5   10000 perm   1 sec   (6692 perm/sec)   p_kst 3.050000e-01   p_cons 3.043000e-01   p_joint 7.584000e-01

Outputting figure to mutsig2_images.part000000000176/TMED5.2_759_10000_0.305_0.3043_0.7584.png
                gene_name: TMED5
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 90 percent done.
TMED8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.566438e-02	ci left: 2.035310e-01	ci right 2.196374e-01	k: 2115	n:10000
Cons ci ratio: 1.423304e-01	ci left: 6.546168e-02	ci right 7.559023e-02	k: 704	n:10000
KS ci ratio: 1.337476e-01	ci left: 7.378639e-02	ci right 8.446032e-02	k: 790	n:10000
TMED8   10000 perm   2 sec   (6417 perm/sec)   p_kst 7.900000e-02   p_cons 7.040000e-02   p_joint 2.115000e-01

Joint ci ratio: 2.627934e-02	ci left: 5.196518e-01	ci right 5.335404e-01	k: 10532	n:20000
Cons ci ratio: 9.486915e-02	ci left: 7.490680e-02	ci right 8.241624e-02	k: 1572	n:20000
KS ci ratio: 9.255771e-02	ci left: 7.847822e-02	ci right 8.614373e-02	k: 1645	n:20000
TMED8   20000 perm   4 sec   (5547 perm/sec)   p_kst 8.225000e-02   p_cons 7.860000e-02   p_joint 5.266000e-01

Outputting figure to mutsig2_images.part000000000176/TMED8.2_1002_20000_0.08225_0.0786_0.5266.png
                gene_name: TMED8
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 93 percent done.
TMEM109
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.753445e-02	ci left: 8.258483e-01	ci right 8.405571e-01	k: 8333	n:10000
Cons ci ratio: 5.461592e-02	ci left: 3.306139e-01	ci right 3.492795e-01	k: 3399	n:10000
KS ci ratio: 1.261589e-02	ci left: 9.003168e-01	ci right 9.118454e-01	k: 9062	n:10000
TMEM109   10000 perm   1 sec   (6761 perm/sec)   p_kst 9.062000e-01   p_cons 3.399000e-01   p_joint 8.333000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM109.2_744_10000_0.9062_0.3399_0.8333.png
                gene_name: TMEM109
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 95 percent done.
TMEM116
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.844707e-02	ci left: 1.919029e-01	ci right 2.076724e-01	k: 1997	n:10000
Cons ci ratio: 2.774561e-02	ci left: 6.568600e-01	ci right 6.754431e-01	k: 6662	n:10000
KS ci ratio: 1.440974e-01	ci left: 6.391519e-02	ci right 7.393770e-02	k: 688	n:10000
TMEM116   10000 perm   2 sec   (6651 perm/sec)   p_kst 6.880000e-02   p_cons 6.662000e-01   p_joint 1.997000e-01

Joint ci ratio: 5.729612e-02	ci left: 1.841879e-01	ci right 1.951025e-01	k: 3792	n:20000
Cons ci ratio: 2.103223e-02	ci left: 6.278821e-01	ci right 6.412787e-01	k: 12692	n:20000
KS ci ratio: 9.988490e-02	ci left: 6.791774e-02	ci right 7.510743e-02	k: 1429	n:20000
TMEM116   20000 perm   3 sec   (5792 perm/sec)   p_kst 7.145000e-02   p_cons 6.346000e-01   p_joint 1.896000e-01

Outputting figure to mutsig2_images.part000000000176/TMEM116.2_766_20000_0.07145_0.6346_0.1896.png
                gene_name: TMEM116
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 98 percent done.
TMEM130
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.550231e-02	ci left: 6.935327e-01	ci right 7.115492e-01	k: 7026	n:10000
KS ci ratio: 2.703753e-02	ci left: 6.683385e-01	ci right 6.867580e-01	k: 6776	n:10000
TMEM130   10000 perm   1 sec   (6778 perm/sec)   p_kst 6.776000e-01   p_cons 7.026000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000176/TMEM130.2_1340_10000_0.6776_0.7026_1.png
                gene_name: TMEM130
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000176
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 176 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1543>
Subject: Job 9894181: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1543>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000177> was used as the working directory.
Started at Sat Oct  6 00:32:49 2012
Results reported at Sat Oct  6 00:43:12 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000177.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000177.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 177  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000177.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    732.13 sec.
    Max Memory :      3559 MB
    Max Swap   :      5996 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
177
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 177
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 177: processing genes 15867 - 15957
Calculating significance of each gene.
Using projection method.
15867	TMEM14B	3.414294e-01
15868	TMEM14C	1
15869	TMEM14E	1
15870	TMEM150A	1
15871	TMEM150B	5.321457e-01
15872	TMEM150C	1
15873	TMEM151A	1
15874	TMEM154	5.005024e-01
15875	TMEM155	1
15876	TMEM156	2.930104e-01
15877	TMEM159	3.086729e-01
15878	TMEM161A	5.650432e-01
15879	TMEM161B	6.746339e-01
15880	TMEM163	5.112519e-02
15881	TMEM164	1.658863e-01
15882	TMEM165	2.651275e-01
15883	TMEM167A	5.029452e-02
15884	TMEM167B	1
15885	TMEM168	4.927291e-02
15886	TMEM169	5.524658e-01
15887	TMEM17	6.597233e-01
15888	TMEM170A	1
15889	TMEM170B	1.950333e-01
15890	TMEM171	3.680715e-01
15891	TMEM173	1
15892	TMEM174	2.755249e-01
15893	TMEM175	7.827280e-01
15894	TMEM176A	1
15895	TMEM176B	1.353517e-02
15896	TMEM177	4.027634e-01
15897	TMEM178	1.541667e-01
15898	TMEM179	1
15899	TMEM179B	3.984928e-01
15900	TMEM18	5.411053e-01
15901	TMEM180	7.170475e-01
15902	TMEM181	9.097593e-01
15903	TMEM182	3.402960e-01
15904	TMEM183A	3.835832e-01
15905	TMEM183B	1
15906	TMEM184A	8.282085e-01
15907	TMEM184B	8.378442e-01
15908	TMEM184C	2.105308e-01
15909	TMEM185A	8.142880e-02
15910	TMEM186	5.387728e-01
15911	TMEM187	6.862564e-01
15912	TMEM188	1
15913	TMEM189	1
15914	TMEM189-UBE2V1	7.511941e-02
15915	TMEM19	7.988880e-01
15916	TMEM190	1
15917	TMEM192	4.633913e-01
15918	TMEM194A	5.348602e-01
15919	TMEM195	1.026400e-01
15920	TMEM196	1
15921	TMEM198	6.811576e-01
15922	TMEM199	1
15923	TMEM2	2.661815e-01
15924	TMEM20	3.080818e-01
15925	TMEM200A	2.861603e-01
15926	TMEM200B	1
15927	TMEM200C	6.883344e-01
15928	TMEM201	1
15929	TMEM202	2.902421e-01
15930	TMEM204	1
15931	TMEM205	1
15932	TMEM206	8.833221e-01
15933	TMEM207	3.312661e-01
15934	TMEM208	1
15935	TMEM209	1
15936	TMEM211	3.486255e-01
15937	TMEM213	1
15938	TMEM214	6.592553e-01
15939	TMEM215	1.894966e-01
15940	TMEM216	6.214541e-02
15941	TMEM217	8.449780e-03
15942	TMEM218	3.215600e-01
15943	TMEM219	3.778182e-01
15944	TMEM22	6.130654e-01
15945	TMEM220	3.047364e-01
15946	TMEM222	5.057449e-01
15947	TMEM223	1
15948	TMEM225	1.551325e-01
15949	TMEM229B	1
15950	TMEM231	6.535528e-01
15951	TMEM25	4.010430e-01
15952	TMEM26	8.699644e-01
15953	TMEM27	1
15954	TMEM30A	2.552542e-01
15955	TMEM30B	7.726194e-01
15956	TMEM31	7.148517e-02
15957	TMEM33	3.007304e-01
Done

Running MutSig 2:
Scatter job 177: processing genes 15867 - 15957
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TMEM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.140657e-02	ci left: 5.993553e-01	ci right 6.185812e-01	k: 6090	n:10000
Cons ci ratio: 9.317333e-03	ci left: 9.420117e-01	ci right 9.509260e-01	k: 9466	n:10000
KS ci ratio: 4.856532e-02	ci left: 3.848032e-01	ci right 4.040584e-01	k: 3944	n:10000
TMEM2   10000 perm   3 sec   (3602 perm/sec)   p_kst 3.944000e-01   p_cons 9.466000e-01   p_joint 6.090000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM2.14_4244_10000_0.3944_0.9466_0.609.png
                gene_name: TMEM2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 3 percent done.
TMEM168
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
Cons ci ratio: 1.052552e-01	ci left: 1.153530e-01	ci right 1.282683e-01	k: 1217	n:10000
KS ci ratio: 1.228514e-01	ci left: 8.669623e-02	ci right 9.814248e-02	k: 923	n:10000
TMEM168   10000 perm   2 sec   (4400 perm/sec)   p_kst 9.230000e-02   p_cons 1.217000e-01   p_joint 4.150000e-02

Joint ci ratio: 1.301312e-01	ci left: 4.056926e-02	ci right 4.626445e-02	k: 867	n:20000
Cons ci ratio: 7.648011e-02	ci left: 1.116422e-01	ci right 1.205697e-01	k: 2321	n:20000
KS ci ratio: 8.819157e-02	ci left: 8.592160e-02	ci right 9.389809e-02	k: 1797	n:20000
TMEM168   20000 perm   5 sec   (4002 perm/sec)   p_kst 8.985000e-02   p_cons 1.160500e-01   p_joint 4.335000e-02

Joint ci ratio: 9.106868e-02	ci left: 5.551169e-02	ci right 6.084094e-02	k: 1744	n:30000
Cons ci ratio: 6.270099e-02	ci left: 1.116409e-01	ci right 1.189005e-01	k: 3457	n:30000
KS ci ratio: 7.313144e-02	ci left: 8.419479e-02	ci right 9.061871e-02	k: 2621	n:30000
TMEM168   30000 perm   8 sec   (3892 perm/sec)   p_kst 8.736667e-02   p_cons 1.152333e-01   p_joint 5.813333e-02

Outputting figure to mutsig2_images.part000000000177/TMEM168.8_2110_30000_0.087367_0.11523_0.058133.png
                gene_name: TMEM168
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.061 

Current progress: 6 percent done.
TMEM189-UBE2V1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.489076e-01	ci left: 2.118344e-02	ci right 2.729802e-02	k: 241	n:10000
Cons ci ratio: 5.704172e-01	ci left: 3.369688e-03	ci right 6.131041e-03	k: 46	n:10000
KS ci ratio: 5.326853e-02	ci left: 3.418387e-01	ci right 3.606481e-01	k: 3512	n:10000
TMEM189-UBE2V1   10000 perm   2 sec   (5835 perm/sec)   p_kst 3.512000e-01   p_cons 4.600000e-03   p_joint 2.410000e-02

Joint ci ratio: 1.344817e-01	ci left: 3.800349e-02	ci right 4.353104e-02	k: 814	n:20000
Cons ci ratio: 4.099816e-01	ci left: 3.620038e-03	ci right 5.528410e-03	k: 90	n:20000
KS ci ratio: 3.767060e-02	ci left: 3.445815e-01	ci right 3.578618e-01	k: 7024	n:20000
TMEM189-UBE2V1   20000 perm   4 sec   (5029 perm/sec)   p_kst 3.512000e-01   p_cons 4.500000e-03   p_joint 4.070000e-02

Joint ci ratio: 1.024832e-01	ci left: 4.411210e-02	ci right 4.890955e-02	k: 1394	n:30000
Cons ci ratio: 3.024883e-01	ci left: 4.725427e-03	ci right 6.439129e-03	k: 166	n:30000
KS ci ratio: 3.065357e-02	ci left: 3.473574e-01	ci right 3.582045e-01	k: 10583	n:30000
TMEM189-UBE2V1   30000 perm   6 sec   (4712 perm/sec)   p_kst 3.527667e-01   p_cons 5.533333e-03   p_joint 4.646667e-02

Joint ci ratio: 8.877844e-02	ci left: 4.440804e-02	ci right 4.855812e-02	k: 1858	n:40000
Cons ci ratio: 2.737508e-01	ci left: 4.402273e-03	ci right 5.821036e-03	k: 203	n:40000
KS ci ratio: 2.652062e-02	ci left: 3.485393e-01	ci right 3.579321e-01	k: 14129	n:40000
TMEM189-UBE2V1   40000 perm   9 sec   (4564 perm/sec)   p_kst 3.532250e-01   p_cons 5.075000e-03   p_joint 4.645000e-02

Joint ci ratio: 8.886333e-02	ci left: 3.579293e-02	ci right 3.914104e-02	k: 1872	n:50000
Cons ci ratio: 2.434157e-01	ci left: 4.532077e-03	ci right 5.806414e-03	k: 257	n:50000
KS ci ratio: 2.371194e-02	ci left: 3.492086e-01	ci right 3.576084e-01	k: 17670	n:50000
TMEM189-UBE2V1   50000 perm   11 sec   (4478 perm/sec)   p_kst 3.534000e-01   p_cons 5.140000e-03   p_joint 3.744000e-02

Joint ci ratio: 1.166180e-01	ci left: 1.740441e-02	ci right 1.957585e-02	k: 1108	n:60000
Cons ci ratio: 2.421116e-01	ci left: 3.823514e-03	ci right 4.891969e-03	k: 260	n:60000
KS ci ratio: 2.160747e-02	ci left: 3.503885e-01	ci right 3.580589e-01	k: 21253	n:60000
TMEM189-UBE2V1   60000 perm   14 sec   (4341 perm/sec)   p_kst 3.542167e-01   p_cons 4.333333e-03   p_joint 1.846667e-02

Joint ci ratio: 1.144885e-01	ci left: 1.552760e-02	ci right 1.742707e-02	k: 1152	n:70000
Cons ci ratio: 2.258342e-01	ci left: 3.801810e-03	ci right 4.782838e-03	k: 299	n:70000
KS ci ratio: 2.001358e-02	ci left: 3.504707e-01	ci right 3.575700e-01	k: 24781	n:70000
TMEM189-UBE2V1   70000 perm   17 sec   (4229 perm/sec)   p_kst 3.540143e-01   p_cons 4.271429e-03   p_joint 1.645714e-02

Joint ci ratio: 7.842027e-02	ci left: 2.909848e-02	ci right 3.148574e-02	k: 2422	n:80000
Cons ci ratio: 2.124523e-01	ci left: 3.787342e-03	ci right 4.699187e-03	k: 338	n:80000
KS ci ratio: 1.911917e-02	ci left: 3.411566e-01	ci right 3.477547e-01	k: 27556	n:80000
TMEM189-UBE2V1   80000 perm   19 sec   (4168 perm/sec)   p_kst 3.444500e-01   p_cons 4.225000e-03   p_joint 3.027500e-02

Joint ci ratio: 7.418660e-02	ci left: 2.897151e-02	ci right 3.121447e-02	k: 2707	n:90000
Cons ci ratio: 2.025478e-01	ci left: 3.724670e-03	ci right 4.574446e-03	k: 372	n:90000
KS ci ratio: 1.800828e-02	ci left: 3.417829e-01	ci right 3.480049e-01	k: 31040	n:90000
TMEM189-UBE2V1   90000 perm   22 sec   (4092 perm/sec)   p_kst 3.448889e-01   p_cons 4.133333e-03   p_joint 3.007778e-02

Joint ci ratio: 6.255047e-02	ci left: 3.660670e-02	ci right 3.898021e-02	k: 3778	n:100000
Cons ci ratio: 1.805829e-01	ci left: 4.266408e-03	ci right 5.122710e-03	k: 468	n:100000
KS ci ratio: 1.709512e-02	ci left: 3.416540e-01	ci right 3.475550e-01	k: 34460	n:100000
TMEM189-UBE2V1   100000 perm   25 sec   (4034 perm/sec)   p_kst 3.446000e-01   p_cons 4.680000e-03   p_joint 3.778000e-02

Joint ci ratio: 6.333332e-02	ci left: 3.258765e-02	ci right 3.472794e-02	k: 3701	n:110000
Cons ci ratio: 1.721624e-01	ci left: 4.286974e-03	ci right 5.103114e-03	k: 515	n:110000
KS ci ratio: 1.628877e-02	ci left: 3.420906e-01	ci right 3.477176e-01	k: 37939	n:110000
TMEM189-UBE2V1   110000 perm   28 sec   (3977 perm/sec)   p_kst 3.449000e-01   p_cons 4.681818e-03   p_joint 3.364545e-02

Joint ci ratio: 5.769687e-02	ci left: 3.597190e-02	ci right 3.811721e-02	k: 4444	n:120000
Cons ci ratio: 1.651145e-01	ci left: 4.288904e-03	ci right 5.068664e-03	k: 560	n:120000
KS ci ratio: 1.560023e-02	ci left: 3.420688e-01	ci right 3.474554e-01	k: 41371	n:120000
TMEM189-UBE2V1   120000 perm   31 sec   (3918 perm/sec)   p_kst 3.447583e-01   p_cons 4.666667e-03   p_joint 3.703333e-02

Joint ci ratio: 5.908132e-02	ci left: 3.178529e-02	ci right 3.372793e-02	k: 4257	n:130000
Cons ci ratio: 1.579530e-01	ci left: 4.342833e-03	ci right 5.094906e-03	k: 612	n:130000
KS ci ratio: 1.499860e-02	ci left: 3.418627e-01	ci right 3.470365e-01	k: 44778	n:130000
TMEM189-UBE2V1   130000 perm   34 sec   (3862 perm/sec)   p_kst 3.444462e-01   p_cons 4.707692e-03   p_joint 3.274615e-02

Joint ci ratio: 5.931096e-02	ci left: 2.935899e-02	ci right 3.116053e-02	k: 4235	n:140000
Cons ci ratio: 1.517638e-01	ci left: 4.382810e-03	ci right 5.109364e-03	k: 663	n:140000
KS ci ratio: 1.445702e-02	ci left: 3.418322e-01	ci right 3.468171e-01	k: 48205	n:140000
TMEM189-UBE2V1   140000 perm   37 sec   (3804 perm/sec)   p_kst 3.443214e-01   p_cons 4.735714e-03   p_joint 3.025000e-02

Joint ci ratio: 5.874761e-02	ci left: 2.797914e-02	ci right 2.967914e-02	k: 4323	n:150000
Cons ci ratio: 1.461467e-01	ci left: 4.424379e-03	ci right 5.128307e-03	k: 715	n:150000
KS ci ratio: 1.396315e-02	ci left: 3.420350e-01	ci right 3.468510e-01	k: 51666	n:150000
TMEM189-UBE2V1   150000 perm   40 sec   (3749 perm/sec)   p_kst 3.444400e-01   p_cons 4.766667e-03   p_joint 2.882000e-02

Joint ci ratio: 5.688384e-02	ci left: 2.800443e-02	ci right 2.965020e-02	k: 4611	n:160000
Cons ci ratio: 1.400155e-01	ci left: 4.533558e-03	ci right 5.222072e-03	k: 779	n:160000
KS ci ratio: 1.352004e-02	ci left: 3.421026e-01	ci right 3.467655e-01	k: 55109	n:160000
TMEM189-UBE2V1   160000 perm   43 sec   (3692 perm/sec)   p_kst 3.444313e-01   p_cons 4.868750e-03   p_joint 2.881875e-02

Joint ci ratio: 5.526824e-02	ci left: 2.794625e-02	ci right 2.954046e-02	k: 4885	n:170000
Cons ci ratio: 1.364778e-01	ci left: 4.499707e-03	ci right 5.164411e-03	k: 820	n:170000
KS ci ratio: 1.311045e-02	ci left: 3.423759e-01	ci right 3.469000e-01	k: 58588	n:170000
TMEM189-UBE2V1   170000 perm   47 sec   (3639 perm/sec)   p_kst 3.446353e-01   p_cons 4.823529e-03   p_joint 2.873529e-02

Joint ci ratio: 5.390671e-02	ci left: 2.776902e-02	ci right 2.931288e-02	k: 5136	n:180000
Cons ci ratio: 1.333508e-01	ci left: 4.459071e-03	ci right 5.101483e-03	k: 859	n:180000
KS ci ratio: 1.273252e-02	ci left: 3.427427e-01	ci right 3.471401e-01	k: 62089	n:180000
TMEM189-UBE2V1   180000 perm   50 sec   (3586 perm/sec)   p_kst 3.449389e-01   p_cons 4.772222e-03   p_joint 2.853333e-02

Joint ci ratio: 5.229739e-02	ci left: 2.796942e-02	ci right 2.947659e-02	k: 5456	n:190000
Cons ci ratio: 1.289250e-01	ci left: 4.529825e-03	ci right 5.159113e-03	k: 919	n:190000
KS ci ratio: 1.239905e-02	ci left: 3.425785e-01	ci right 3.468578e-01	k: 65496	n:190000
TMEM189-UBE2V1   190000 perm   54 sec   (3532 perm/sec)   p_kst 3.447158e-01   p_cons 4.836842e-03   p_joint 2.871579e-02

Joint ci ratio: 5.179218e-02	ci left: 2.712335e-02	ci right 2.857038e-02	k: 5568	n:200000
Cons ci ratio: 1.254927e-01	ci left: 4.550222e-03	ci right 5.164264e-03	k: 970	n:200000
KS ci ratio: 1.209021e-02	ci left: 3.424421e-01	ci right 3.466124e-01	k: 68905	n:200000
TMEM189-UBE2V1   200000 perm   57 sec   (3482 perm/sec)   p_kst 3.445250e-01   p_cons 4.850000e-03   p_joint 2.784000e-02

Joint ci ratio: 5.275939e-02	ci left: 2.493807e-02	ci right 2.629411e-02	k: 5378	n:210000
Cons ci ratio: 1.226832e-01	ci left: 4.541178e-03	ci right 5.139283e-03	k: 1015	n:210000
KS ci ratio: 1.181332e-02	ci left: 3.419395e-01	ci right 3.460077e-01	k: 72234	n:210000
TMEM189-UBE2V1   210000 perm   61 sec   (3431 perm/sec)   p_kst 3.439714e-01   p_cons 4.833333e-03   p_joint 2.560952e-02

Joint ci ratio: 4.958587e-02	ci left: 2.693736e-02	ci right 2.831149e-02	k: 6076	n:220000
Cons ci ratio: 1.201112e-01	ci left: 4.528686e-03	ci right 5.111752e-03	k: 1059	n:220000
KS ci ratio: 1.154529e-02	ci left: 3.418468e-01	ci right 3.458209e-01	k: 75643	n:220000
TMEM189-UBE2V1   220000 perm   65 sec   (3382 perm/sec)   p_kst 3.438318e-01   p_cons 4.813636e-03   p_joint 2.761818e-02

Joint ci ratio: 5.098142e-02	ci left: 2.442158e-02	ci right 2.570347e-02	k: 5763	n:230000
Cons ci ratio: 1.177480e-01	ci left: 4.513179e-03	ci right 5.082020e-03	k: 1102	n:230000
KS ci ratio: 1.151995e-02	ci left: 3.329234e-01	ci right 3.367851e-01	k: 77016	n:230000
TMEM189-UBE2V1   230000 perm   69 sec   (3334 perm/sec)   p_kst 3.348522e-01   p_cons 4.791304e-03   p_joint 2.505652e-02

Joint ci ratio: 5.150529e-02	ci left: 2.295933e-02	ci right 2.417721e-02	k: 5655	n:240000
Cons ci ratio: 1.155190e-01	ci left: 4.499067e-03	ci right 5.054663e-03	k: 1145	n:240000
KS ci ratio: 1.127640e-02	ci left: 3.330034e-01	ci right 3.367839e-01	k: 80374	n:240000
TMEM189-UBE2V1   240000 perm   73 sec   (3288 perm/sec)   p_kst 3.348917e-01   p_cons 4.770833e-03   p_joint 2.356250e-02

Joint ci ratio: 4.761429e-02	ci left: 2.576714e-02	ci right 2.702787e-02	k: 6598	n:250000
Cons ci ratio: 1.123256e-01	ci left: 4.575593e-03	ci right 5.123984e-03	k: 1211	n:250000
KS ci ratio: 1.105095e-02	ci left: 3.329460e-01	ci right 3.366498e-01	k: 83699	n:250000
TMEM189-UBE2V1   250000 perm   77 sec   (3237 perm/sec)   p_kst 3.347960e-01   p_cons 4.844000e-03   p_joint 2.639200e-02

Joint ci ratio: 4.933372e-02	ci left: 2.312250e-02	ci right 2.429584e-02	k: 6163	n:260000
Cons ci ratio: 1.103415e-01	ci left: 4.564125e-03	ci right 5.100851e-03	k: 1255	n:260000
KS ci ratio: 1.083784e-02	ci left: 3.329207e-01	ci right 3.365523e-01	k: 87031	n:260000
TMEM189-UBE2V1   260000 perm   82 sec   (3187 perm/sec)   p_kst 3.347346e-01   p_cons 4.826923e-03   p_joint 2.370385e-02

Joint ci ratio: 5.018276e-02	ci left: 2.154511e-02	ci right 2.265777e-02	k: 5966	n:270000
Cons ci ratio: 1.080837e-01	ci left: 4.586020e-03	ci right 5.113584e-03	k: 1308	n:270000
KS ci ratio: 1.063608e-02	ci left: 3.329200e-01	ci right 3.364835e-01	k: 90369	n:270000
TMEM189-UBE2V1   270000 perm   86 sec   (3145 perm/sec)   p_kst 3.347000e-01   p_cons 4.844444e-03   p_joint 2.209630e-02

Joint ci ratio: 4.335267e-02	ci left: 2.775602e-02	ci right 2.898949e-02	k: 7943	n:280000
Cons ci ratio: 1.059590e-01	ci left: 4.606455e-03	ci right 5.125303e-03	k: 1361	n:280000
KS ci ratio: 1.044878e-02	ci left: 3.327666e-01	ci right 3.362654e-01	k: 93664	n:280000
TMEM189-UBE2V1   280000 perm   90 sec   (3106 perm/sec)   p_kst 3.345143e-01   p_cons 4.860714e-03   p_joint 2.836786e-02

Joint ci ratio: 4.248378e-02	ci left: 2.791444e-02	ci right 2.912948e-02	k: 8270	n:290000
Cons ci ratio: 1.038812e-01	ci left: 4.632294e-03	ci right 5.143195e-03	k: 1416	n:290000
KS ci ratio: 1.026364e-02	ci left: 3.329446e-01	ci right 3.363828e-01	k: 97052	n:290000
TMEM189-UBE2V1   290000 perm   95 sec   (3067 perm/sec)   p_kst 3.346621e-01   p_cons 4.882759e-03   p_joint 2.851724e-02

Joint ci ratio: 4.212119e-02	ci left: 2.746865e-02	ci right 2.865383e-02	k: 8417	n:300000
Cons ci ratio: 1.022004e-01	ci left: 4.630513e-03	ci right 5.132459e-03	k: 1463	n:300000
KS ci ratio: 1.009458e-02	ci left: 3.328216e-01	ci right 3.362016e-01	k: 100353	n:300000
TMEM189-UBE2V1   300000 perm   99 sec   (3030 perm/sec)   p_kst 3.345100e-01   p_cons 4.876667e-03   p_joint 2.805667e-02

Joint ci ratio: 4.252400e-02	ci left: 2.611299e-02	ci right 2.725072e-02	k: 8270	n:310000
Cons ci ratio: 1.008673e-01	ci left: 4.603750e-03	ci right 5.095899e-03	k: 1502	n:310000
KS ci ratio: 9.925768e-03	ci left: 3.330581e-01	ci right 3.363837e-01	k: 103763	n:310000
TMEM189-UBE2V1   310000 perm   104 sec   (2992 perm/sec)   p_kst 3.347194e-01   p_cons 4.845161e-03   p_joint 2.667742e-02

Joint ci ratio: 4.682549e-02	ci left: 2.092918e-02	ci right 2.193576e-02	k: 6857	n:320000
Cons ci ratio: 1.043498e-01	ci left: 4.161440e-03	ci right 4.622606e-03	k: 1404	n:320000
KS ci ratio: 9.770011e-03	ci left: 3.330587e-01	ci right 3.363318e-01	k: 107102	n:320000
TMEM189-UBE2V1   320000 perm   108 sec   (2956 perm/sec)   p_kst 3.346938e-01   p_cons 4.387500e-03   p_joint 2.142812e-02

Joint ci ratio: 4.696707e-02	ci left: 2.018697e-02	ci right 2.116087e-02	k: 6821	n:330000
Cons ci ratio: 1.030035e-01	ci left: 4.144548e-03	ci right 4.597557e-03	k: 1441	n:330000
KS ci ratio: 9.619988e-03	ci left: 3.331232e-01	ci right 3.363463e-01	k: 110462	n:330000
TMEM189-UBE2V1   330000 perm   113 sec   (2921 perm/sec)   p_kst 3.347333e-01   p_cons 4.366667e-03   p_joint 2.066970e-02

Joint ci ratio: 4.497418e-02	ci left: 2.136411e-02	ci right 2.234994e-02	k: 7430	n:340000
Cons ci ratio: 1.016734e-01	ci left: 4.131552e-03	ci right 4.576961e-03	k: 1479	n:340000
KS ci ratio: 9.483684e-03	ci left: 3.328553e-01	ci right 3.360299e-01	k: 113710	n:340000
TMEM189-UBE2V1   340000 perm   118 sec   (2884 perm/sec)   p_kst 3.344412e-01   p_cons 4.350000e-03   p_joint 2.185294e-02

Joint ci ratio: 4.504741e-02	ci left: 2.069988e-02	ci right 2.165665e-02	k: 7411	n:350000
Cons ci ratio: 1.004600e-01	ci left: 4.113763e-03	ci right 4.551649e-03	k: 1515	n:350000
KS ci ratio: 9.352229e-03	ci left: 3.326401e-01	ci right 3.357684e-01	k: 116971	n:350000
TMEM189-UBE2V1   350000 perm   123 sec   (2847 perm/sec)   p_kst 3.342029e-01   p_cons 4.328571e-03   p_joint 2.117429e-02

Joint ci ratio: 4.490347e-02	ci left: 2.026485e-02	ci right 2.119844e-02	k: 7462	n:360000
Cons ci ratio: 9.877899e-02	ci left: 4.140340e-03	ci right 4.573254e-03	k: 1567	n:360000
KS ci ratio: 9.220505e-03	ci left: 3.327062e-01	ci right 3.357909e-01	k: 120329	n:360000
TMEM189-UBE2V1   360000 perm   128 sec   (2814 perm/sec)   p_kst 3.342472e-01   p_cons 4.352778e-03   p_joint 2.072778e-02

Outputting figure to mutsig2_images.part000000000177/TMEM189-UBE2V1.6_1145_360000_0.33425_0.0043528_0.020728.png
                gene_name: TMEM189-UBE2V1
               theta_stop: 0.099 
                    nperm: 360000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.0044 
      ci_cons_bounds_left: 0.0041 
     ci_cons_bounds_right: 0.0046 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 8 percent done.
TMEM195
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.112769e-02	ci left: 2.824065e-01	ci right 3.003152e-01	k: 2913	n:10000
Cons ci ratio: 4.486767e-02	ci left: 4.230598e-01	ci right 4.425793e-01	k: 4328	n:10000
KS ci ratio: 7.637447e-02	ci left: 2.004751e-01	ci right 2.164950e-01	k: 2084	n:10000
TMEM195   10000 perm   2 sec   (5474 perm/sec)   p_kst 2.084000e-01   p_cons 4.328000e-01   p_joint 2.913000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM195.6_1390_10000_0.2084_0.4328_0.2913.png
                gene_name: TMEM195
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 11 percent done.
TMEM176B
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.835482e-02	ci left: 8.125304e-01	ci right 8.276826e-01	k: 8202	n:10000
KS ci ratio: 2.762719e-02	ci left: 6.587727e-01	ci right 6.773293e-01	k: 6681	n:10000
TMEM176B   10000 perm   2 sec   (5961 perm/sec)   p_kst 6.681000e-01   p_cons 8.202000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000177/TMEM176B.4_837_10000_0.6681_0.8202_1.png
                gene_name: TMEM176B
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
TMEM217
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.168237e-02	ci left: 3.556540e-01	ci right 3.746246e-01	k: 3651	n:10000
Cons ci ratio: 1.071875e-02	ci left: 9.253392e-01	ci right 9.354083e-01	k: 9305	n:10000
KS ci ratio: 7.909067e-02	ci left: 1.893422e-01	ci right 2.050346e-01	k: 1971	n:10000
TMEM217   10000 perm   2 sec   (6327 perm/sec)   p_kst 1.971000e-01   p_cons 9.305000e-01   p_joint 3.651000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM217.5_702_10000_0.1971_0.9305_0.3651.png
                gene_name: TMEM217
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 17 percent done.
TMEM178
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.867443e-01	ci left: 3.824795e-02	ci right 4.622151e-02	k: 421	n:10000
Cons ci ratio: 4.002490e-01	ci left: 7.602648e-03	ci right 1.149110e-02	k: 94	n:10000
KS ci ratio: 7.891625e-02	ci left: 1.900315e-01	ci right 2.057449e-01	k: 1978	n:10000
TMEM178   10000 perm   2 sec   (6177 perm/sec)   p_kst 1.978000e-01   p_cons 9.400000e-03   p_joint 4.210000e-02

Joint ci ratio: 2.246120e-01	ci left: 1.331396e-02	ci right 1.672916e-02	k: 299	n:20000
Cons ci ratio: 2.860817e-01	ci left: 7.969983e-03	ci right 1.067556e-02	k: 185	n:20000
KS ci ratio: 5.767167e-02	ci left: 1.822102e-01	ci right 1.930807e-01	k: 3752	n:20000
TMEM178   20000 perm   4 sec   (5402 perm/sec)   p_kst 1.876000e-01   p_cons 9.250000e-03   p_joint 1.495000e-02

Joint ci ratio: 1.349218e-01	ci left: 2.551747e-02	ci right 2.924148e-02	k: 820	n:30000
Cons ci ratio: 2.449152e-01	ci left: 7.429710e-03	ci right 9.533810e-03	k: 253	n:30000
KS ci ratio: 4.713790e-02	ci left: 1.828989e-01	ci right 1.917618e-01	k: 5619	n:30000
TMEM178   30000 perm   6 sec   (5150 perm/sec)   p_kst 1.873000e-01   p_cons 8.433333e-03   p_joint 2.733333e-02

Joint ci ratio: 9.413483e-02	ci left: 3.959077e-02	ci right 4.352614e-02	k: 1661	n:40000
Cons ci ratio: 2.145667e-01	ci left: 7.386910e-03	ci right 9.185572e-03	k: 330	n:40000
KS ci ratio: 4.059731e-02	ci left: 1.851735e-01	ci right 1.928717e-01	k: 7560	n:40000
TMEM178   40000 perm   8 sec   (4973 perm/sec)   p_kst 1.890000e-01   p_cons 8.250000e-03   p_joint 4.152500e-02

Joint ci ratio: 9.598538e-02	ci left: 3.072848e-02	ci right 3.384613e-02	k: 1613	n:50000
Cons ci ratio: 1.906986e-01	ci left: 7.580572e-03	ci right 9.197284e-03	k: 418	n:50000
KS ci ratio: 3.625995e-02	ci left: 1.860134e-01	ci right 1.929027e-01	k: 9472	n:50000
TMEM178   50000 perm   10 sec   (4834 perm/sec)   p_kst 1.894400e-01   p_cons 8.360000e-03   p_joint 3.226000e-02

Joint ci ratio: 8.417595e-02	ci left: 3.341305e-02	ci right 3.636549e-02	k: 2092	n:60000
Cons ci ratio: 1.789573e-01	ci left: 7.223099e-03	ci right 8.658443e-03	k: 475	n:60000
KS ci ratio: 3.308740e-02	ci left: 1.864371e-01	ci right 1.927262e-01	k: 11374	n:60000
TMEM178   60000 perm   13 sec   (4708 perm/sec)   p_kst 1.895667e-01   p_cons 7.916667e-03   p_joint 3.486667e-02

Joint ci ratio: 1.038642e-01	ci left: 1.890606e-02	ci right 2.099114e-02	k: 1395	n:70000
Cons ci ratio: 1.671038e-01	ci left: 7.147934e-03	ci right 8.464786e-03	k: 545	n:70000
KS ci ratio: 3.062991e-02	ci left: 1.867020e-01	ci right 1.925238e-01	k: 13272	n:70000
TMEM178   70000 perm   15 sec   (4605 perm/sec)   p_kst 1.896000e-01   p_cons 7.785714e-03   p_joint 1.992857e-02

Joint ci ratio: 6.937728e-02	ci left: 3.704206e-02	ci right 3.971655e-02	k: 3069	n:80000
Cons ci ratio: 1.553111e-01	ci left: 7.286159e-03	ci right 8.524927e-03	k: 631	n:80000
KS ci ratio: 2.869854e-02	ci left: 1.863915e-01	ci right 1.918310e-01	k: 15128	n:80000
TMEM178   80000 perm   18 sec   (4502 perm/sec)   p_kst 1.891000e-01   p_cons 7.887500e-03   p_joint 3.836250e-02

Joint ci ratio: 7.692408e-02	ci left: 2.696459e-02	ci right 2.913264e-02	k: 2523	n:90000
Cons ci ratio: 1.454017e-01	ci left: 7.428339e-03	ci right 8.603703e-03	k: 720	n:90000
KS ci ratio: 2.703681e-02	ci left: 1.867783e-01	ci right 1.919084e-01	k: 17040	n:90000
TMEM178   90000 perm   20 sec   (4407 perm/sec)   p_kst 1.893333e-01   p_cons 8.000000e-03   p_joint 2.803333e-02

Joint ci ratio: 7.004299e-02	ci left: 2.930522e-02	ci right 3.144213e-02	k: 3036	n:100000
Cons ci ratio: 1.382984e-01	ci left: 7.418540e-03	ci right 8.530283e-03	k: 796	n:100000
KS ci ratio: 2.563221e-02	ci left: 1.871148e-01	ci right 1.919832e-01	k: 18954	n:100000
TMEM178   100000 perm   23 sec   (4292 perm/sec)   p_kst 1.895400e-01   p_cons 7.960000e-03   p_joint 3.036000e-02

Joint ci ratio: 6.091418e-02	ci left: 3.517553e-02	ci right 3.739446e-02	k: 3990	n:110000
Cons ci ratio: 1.318397e-01	ci left: 7.446840e-03	ci right 8.506621e-03	k: 876	n:110000
KS ci ratio: 2.461247e-02	ci left: 1.850795e-01	ci right 1.897006e-01	k: 20612	n:110000
TMEM178   110000 perm   26 sec   (4201 perm/sec)   p_kst 1.873818e-01   p_cons 7.963636e-03   p_joint 3.627273e-02

Joint ci ratio: 6.010426e-02	ci left: 3.320345e-02	ci right 3.526914e-02	k: 4107	n:120000
Cons ci ratio: 1.258777e-01	ci left: 7.511792e-03	ci right 8.528866e-03	k: 961	n:120000
KS ci ratio: 2.357556e-02	ci left: 1.850379e-01	ci right 1.894606e-01	k: 22469	n:120000
TMEM178   120000 perm   29 sec   (4128 perm/sec)   p_kst 1.872417e-01   p_cons 8.008333e-03   p_joint 3.422500e-02

Joint ci ratio: 5.782935e-02	ci left: 3.315034e-02	ci right 3.513204e-02	k: 4437	n:130000
Cons ci ratio: 1.217170e-01	ci left: 7.433369e-03	ci right 8.404158e-03	k: 1028	n:130000
KS ci ratio: 2.267560e-02	ci left: 1.847917e-01	ci right 1.890377e-01	k: 24298	n:130000
TMEM178   130000 perm   32 sec   (4053 perm/sec)   p_kst 1.869077e-01   p_cons 7.907692e-03   p_joint 3.413077e-02

Joint ci ratio: 5.392014e-02	ci left: 3.539681e-02	ci right 3.736531e-02	k: 5092	n:140000
Cons ci ratio: 1.176191e-01	ci left: 7.408230e-03	ci right 8.340897e-03	k: 1101	n:140000
KS ci ratio: 2.183135e-02	ci left: 1.851383e-01	ci right 1.892318e-01	k: 26205	n:140000
TMEM178   140000 perm   35 sec   (3982 perm/sec)   p_kst 1.871786e-01   p_cons 7.864286e-03   p_joint 3.637143e-02

Joint ci ratio: 5.200182e-02	ci left: 3.555003e-02	ci right 3.745460e-02	k: 5474	n:150000
Cons ci ratio: 1.134235e-01	ci left: 7.451704e-03	ci right 8.354140e-03	k: 1184	n:150000
KS ci ratio: 2.111462e-02	ci left: 1.848702e-01	ci right 1.888219e-01	k: 28026	n:150000
TMEM178   150000 perm   38 sec   (3915 perm/sec)   p_kst 1.868400e-01   p_cons 7.893333e-03   p_joint 3.649333e-02

Joint ci ratio: 5.052591e-02	ci left: 3.533944e-02	ci right 3.717742e-02	k: 5800	n:160000
Cons ci ratio: 1.102181e-01	ci left: 7.411228e-03	ci right 8.281748e-03	k: 1254	n:160000
KS ci ratio: 2.043803e-02	ci left: 1.850235e-01	ci right 1.888503e-01	k: 29909	n:160000
TMEM178   160000 perm   42 sec   (3851 perm/sec)   p_kst 1.869312e-01   p_cons 7.837500e-03   p_joint 3.625000e-02

Joint ci ratio: 4.938247e-02	ci left: 3.485787e-02	ci right 3.662860e-02	k: 6075	n:170000
Cons ci ratio: 1.071071e-01	ci left: 7.398734e-03	ci right 8.241710e-03	k: 1328	n:170000
KS ci ratio: 1.983985e-02	ci left: 1.848969e-01	ci right 1.886079e-01	k: 31747	n:170000
TMEM178   170000 perm   45 sec   (3787 perm/sec)   p_kst 1.867471e-01   p_cons 7.811765e-03   p_joint 3.573529e-02

Joint ci ratio: 4.781955e-02	ci left: 3.512763e-02	ci right 3.685403e-02	k: 6477	n:180000
Cons ci ratio: 1.033581e-01	ci left: 7.517834e-03	ci right 8.342577e-03	k: 1426	n:180000
KS ci ratio: 1.925535e-02	ci left: 1.853504e-01	ci right 1.889596e-01	k: 33687	n:180000
TMEM178   180000 perm   48 sec   (3725 perm/sec)   p_kst 1.871500e-01   p_cons 7.922222e-03   p_joint 3.598333e-02

Joint ci ratio: 4.817534e-02	ci left: 3.286186e-02	ci right 3.448925e-02	k: 6397	n:190000
Cons ci ratio: 1.000101e-01	ci left: 7.619722e-03	ci right 8.426976e-03	k: 1523	n:190000
KS ci ratio: 1.873581e-02	ci left: 1.854954e-01	ci right 1.890089e-01	k: 35577	n:190000
TMEM178   190000 perm   52 sec   (3665 perm/sec)   p_kst 1.872474e-01   p_cons 8.015789e-03   p_joint 3.366842e-02

Joint ci ratio: 4.259315e-02	ci left: 3.976395e-02	ci right 4.149940e-02	k: 8125	n:200000
Cons ci ratio: 9.769935e-02	ci left: 7.594707e-03	ci right 8.379654e-03	k: 1596	n:200000
KS ci ratio: 1.825407e-02	ci left: 1.856619e-01	ci right 1.890872e-01	k: 37474	n:200000
TMEM178   200000 perm   56 sec   (3603 perm/sec)   p_kst 1.873700e-01   p_cons 7.980000e-03   p_joint 4.062500e-02

Outputting figure to mutsig2_images.part000000000177/TMEM178.4_910_200000_0.18737_0.00798_0.040625.png
                gene_name: TMEM178
               theta_stop: 0.098 
                    nperm: 200000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.0080 
      ci_cons_bounds_left: 0.0076 
     ci_cons_bounds_right: 0.0084 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.041 

Current progress: 19 percent done.
TMEM200A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.804040e-02	ci left: 2.406473e-01	ci right 2.576990e-01	k: 2491	n:10000
Cons ci ratio: 4.666725e-02	ci left: 4.039239e-01	ci right 4.233264e-01	k: 4136	n:10000
KS ci ratio: 1.056010e-01	ci left: 1.146691e-01	ci right 1.275526e-01	k: 1210	n:10000
TMEM200A   10000 perm   2 sec   (5745 perm/sec)   p_kst 1.210000e-01   p_cons 4.136000e-01   p_joint 2.491000e-01

Joint ci ratio: 6.316985e-02	ci left: 1.563258e-01	ci right 1.665729e-01	k: 3228	n:20000
Cons ci ratio: 3.346534e-02	ci left: 4.000307e-01	ci right 4.136963e-01	k: 8137	n:20000
KS ci ratio: 7.460246e-02	ci left: 1.167565e-01	ci right 1.258540e-01	k: 2425	n:20000
TMEM200A   20000 perm   4 sec   (4969 perm/sec)   p_kst 1.212500e-01   p_cons 4.068500e-01   p_joint 1.614000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM200A.4_1480_20000_0.12125_0.40685_0.1614.png
                gene_name: TMEM200A
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 22 percent done.
TMEM30A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.586907e-02	ci left: 2.026437e-01	ci right 2.187252e-01	k: 2106	n:10000
Cons ci ratio: 1.145032e-01	ci left: 9.886244e-02	ci right 1.109688e-01	k: 1048	n:10000
KS ci ratio: 5.049971e-02	ci left: 3.663941e-01	ci right 3.854782e-01	k: 3759	n:10000
TMEM30A   10000 perm   2 sec   (5989 perm/sec)   p_kst 3.759000e-01   p_cons 1.048000e-01   p_joint 2.106000e-01

Joint ci ratio: 5.493056e-02	ci left: 1.973450e-01	ci right 2.085415e-01	k: 4058	n:20000
Cons ci ratio: 8.411543e-02	ci left: 9.381504e-02	ci right 1.021023e-01	k: 1958	n:20000
KS ci ratio: 3.582292e-02	ci left: 3.677361e-01	ci right 3.812004e-01	k: 7489	n:20000
TMEM30A   20000 perm   4 sec   (5357 perm/sec)   p_kst 3.744500e-01   p_cons 9.790000e-02   p_joint 2.029000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM30A.4_1114_20000_0.37445_0.0979_0.2029.png
                gene_name: TMEM30A
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 25 percent done.
TMEM163
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.256428e-01	ci left: 8.310086e-02	ci right 9.434008e-02	k: 886	n:10000
Cons ci ratio: 3.587123e-01	ci left: 9.685560e-03	ci right 1.400583e-02	k: 117	n:10000
KS ci ratio: 2.465067e-02	ci left: 7.076552e-01	ci right 7.254185e-01	k: 7166	n:10000
TMEM163   10000 perm   2 sec   (6421 perm/sec)   p_kst 7.166000e-01   p_cons 1.170000e-02   p_joint 8.860000e-02

Joint ci ratio: 1.109958e-01	ci left: 5.543290e-02	ci right 6.199612e-02	k: 1173	n:20000
Cons ci ratio: 2.916733e-01	ci left: 7.645156e-03	ci right 1.030055e-02	k: 178	n:20000
KS ci ratio: 1.739457e-02	ci left: 7.111538e-01	ci right 7.236829e-01	k: 14349	n:20000
TMEM163   20000 perm   4 sec   (5623 perm/sec)   p_kst 7.174500e-01   p_cons 8.900000e-03   p_joint 5.865000e-02

Joint ci ratio: 7.027565e-02	ci left: 9.065486e-02	ci right 9.729068e-02	k: 2818	n:30000
Cons ci ratio: 2.352951e-01	ci left: 8.087922e-03	ci right 1.027538e-02	k: 274	n:30000
KS ci ratio: 1.434233e-02	ci left: 7.083131e-01	ci right 7.185788e-01	k: 21404	n:30000
TMEM163   30000 perm   6 sec   (5353 perm/sec)   p_kst 7.134667e-01   p_cons 9.133333e-03   p_joint 9.393333e-02

Joint ci ratio: 6.363353e-02	ci left: 8.388604e-02	ci right 8.942414e-02	k: 3465	n:40000
Cons ci ratio: 2.089128e-01	ci left: 7.813225e-03	ci right 9.659157e-03	k: 348	n:40000
KS ci ratio: 1.241682e-02	ci left: 7.091418e-01	ci right 7.180272e-01	k: 28544	n:40000
TMEM163   40000 perm   8 sec   (5175 perm/sec)   p_kst 7.136000e-01   p_cons 8.700000e-03   p_joint 8.662500e-02

Joint ci ratio: 4.488378e-02	ci left: 1.293812e-01	ci right 1.353415e-01	k: 6617	n:50000
Cons ci ratio: 1.869118e-01	ci left: 7.904622e-03	ci right 9.553176e-03	k: 435	n:50000
KS ci ratio: 1.111520e-02	ci left: 7.092737e-01	ci right 7.172215e-01	k: 35663	n:50000
TMEM163   50000 perm   10 sec   (5013 perm/sec)   p_kst 7.132600e-01   p_cons 8.700000e-03   p_joint 1.323400e-01

Joint ci ratio: 4.097196e-02	ci left: 1.296480e-01	ci right 1.350876e-01	k: 7941	n:60000
Cons ci ratio: 1.733548e-01	ci left: 7.717154e-03	ci right 9.197648e-03	k: 506	n:60000
KS ci ratio: 1.015941e-02	ci left: 7.091109e-01	ci right 7.163685e-01	k: 42765	n:60000
TMEM163   60000 perm   12 sec   (4884 perm/sec)   p_kst 7.127500e-01   p_cons 8.433333e-03   p_joint 1.323500e-01

Joint ci ratio: 4.316144e-02	ci left: 1.031345e-01	ci right 1.076983e-01	k: 7378	n:70000
Cons ci ratio: 1.575019e-01	ci left: 8.080230e-03	ci right 9.475232e-03	k: 613	n:70000
KS ci ratio: 9.407273e-03	ci left: 7.093176e-01	ci right 7.160362e-01	k: 49888	n:70000
TMEM163   70000 perm   15 sec   (4763 perm/sec)   p_kst 7.126857e-01   p_cons 8.757143e-03   p_joint 1.054000e-01

Joint ci ratio: 3.737629e-02	ci left: 1.186112e-01	ci right 1.231413e-01	k: 9669	n:80000
Cons ci ratio: 1.457367e-01	ci left: 8.308983e-03	ci right 9.626997e-03	k: 716	n:80000
KS ci ratio: 8.793490e-03	ci left: 7.098263e-01	ci right 7.161082e-01	k: 57038	n:80000
TMEM163   80000 perm   17 sec   (4637 perm/sec)   p_kst 7.129750e-01   p_cons 8.950000e-03   p_joint 1.208625e-01

Joint ci ratio: 4.084916e-02	ci left: 9.092297e-02	ci right 9.472554e-02	k: 8353	n:90000
Cons ci ratio: 1.360991e-01	ci left: 8.511391e-03	ci right 9.764998e-03	k: 821	n:90000
KS ci ratio: 8.280179e-03	ci left: 7.105226e-01	ci right 7.164414e-01	k: 64214	n:90000
TMEM163   90000 perm   20 sec   (4543 perm/sec)   p_kst 7.134889e-01   p_cons 9.122222e-03   p_joint 9.281111e-02

Joint ci ratio: 4.647780e-02	ci left: 6.486443e-02	ci right 6.796078e-02	k: 6640	n:100000
Cons ci ratio: 1.284309e-01	ci left: 8.636886e-03	ci right 9.831839e-03	k: 922	n:100000
KS ci ratio: 7.858517e-03	ci left: 7.105061e-01	ci right 7.161216e-01	k: 71332	n:100000
TMEM163   100000 perm   22 sec   (4456 perm/sec)   p_kst 7.133200e-01   p_cons 9.220000e-03   p_joint 6.640000e-02

Joint ci ratio: 4.122740e-02	ci left: 7.437760e-02	ci right 7.751752e-02	k: 8353	n:110000
Cons ci ratio: 1.222901e-01	ci left: 8.688291e-03	ci right 9.828717e-03	k: 1017	n:110000
KS ci ratio: 7.500666e-03	ci left: 7.102072e-01	ci right 7.155634e-01	k: 78418	n:110000
TMEM163   110000 perm   25 sec   (4373 perm/sec)   p_kst 7.128909e-01   p_cons 9.245455e-03   p_joint 7.593636e-02

Joint ci ratio: 4.005661e-02	ci left: 7.242598e-02	ci right 7.539465e-02	k: 8868	n:120000
Cons ci ratio: 1.173801e-01	ci left: 8.667533e-03	ci right 9.756384e-03	k: 1104	n:120000
KS ci ratio: 7.183669e-03	ci left: 7.101890e-01	ci right 7.153174e-01	k: 85531	n:120000
TMEM163   120000 perm   28 sec   (4284 perm/sec)   p_kst 7.127583e-01   p_cons 9.200000e-03   p_joint 7.390000e-02

Joint ci ratio: 3.694440e-02	ci left: 7.822570e-02	ci right 8.117769e-02	k: 10360	n:130000
Cons ci ratio: 1.120259e-01	ci left: 8.807776e-03	ci right 9.860439e-03	k: 1212	n:130000
KS ci ratio: 6.892201e-03	ci left: 7.108640e-01	ci right 7.157880e-01	k: 92733	n:130000
TMEM163   130000 perm   31 sec   (4210 perm/sec)   p_kst 7.133308e-01   p_cons 9.323077e-03   p_joint 7.969231e-02

Joint ci ratio: 3.712820e-02	ci left: 7.237910e-02	ci right 7.512430e-02	k: 10324	n:140000
Cons ci ratio: 1.076314e-01	ci left: 8.880280e-03	ci right 9.897338e-03	k: 1313	n:140000
KS ci ratio: 6.644892e-03	ci left: 7.107442e-01	ci right 7.154898e-01	k: 99837	n:140000
TMEM163   140000 perm   34 sec   (4140 perm/sec)   p_kst 7.131214e-01   p_cons 9.378571e-03   p_joint 7.374286e-02

Joint ci ratio: 3.296121e-02	ci left: 8.474467e-02	ci right 8.759135e-02	k: 12924	n:150000
Cons ci ratio: 1.044267e-01	ci left: 8.820417e-03	ci right 9.798691e-03	k: 1395	n:150000
KS ci ratio: 6.417089e-03	ci left: 7.109840e-01	ci right 7.155677e-01	k: 106992	n:150000
TMEM163   150000 perm   37 sec   (4075 perm/sec)   p_kst 7.132800e-01   p_cons 9.300000e-03   p_joint 8.616000e-02

Joint ci ratio: 3.190401e-02	ci left: 8.484159e-02	ci right 8.759843e-02	k: 13794	n:160000
Cons ci ratio: 1.004680e-01	ci left: 8.951238e-03	ci right 9.904165e-03	k: 1507	n:160000
KS ci ratio: 6.207132e-03	ci left: 7.114656e-01	ci right 7.159017e-01	k: 114190	n:160000
TMEM163   160000 perm   40 sec   (4008 perm/sec)   p_kst 7.136875e-01   p_cons 9.418750e-03   p_joint 8.621250e-02

Joint ci ratio: 2.968155e-02	ci left: 9.167015e-02	ci right 9.443786e-02	k: 15818	n:170000
Cons ci ratio: 9.800226e-02	ci left: 8.866375e-03	ci right 9.785769e-03	k: 1584	n:170000
KS ci ratio: 6.024913e-03	ci left: 7.113206e-01	ci right 7.156250e-01	k: 121291	n:170000
TMEM163   170000 perm   43 sec   (3945 perm/sec)   p_kst 7.134765e-01   p_cons 9.317647e-03   p_joint 9.304706e-02

Outputting figure to mutsig2_images.part000000000177/TMEM163.3_902_170000_0.71348_0.0093176_0.093047.png
                gene_name: TMEM163
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.0093 
      ci_cons_bounds_left: 0.0089 
     ci_cons_bounds_right: 0.0098 
                  p_joint: 0.093 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.094 

Current progress: 28 percent done.
TMEM164
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.955702e-02	ci left: 6.279891e-01	ci right 6.469308e-01	k: 6375	n:10000
Cons ci ratio: 7.625897e-02	ci left: 2.009680e-01	ci right 2.170019e-01	k: 2089	n:10000
KS ci ratio: 1.704638e-02	ci left: 8.336838e-01	ci right 8.481171e-01	k: 8410	n:10000
TMEM164   10000 perm   2 sec   (6493 perm/sec)   p_kst 8.410000e-01   p_cons 2.089000e-01   p_joint 6.375000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM164.3_918_10000_0.841_0.2089_0.6375.png
                gene_name: TMEM164
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 31 percent done.
TMEM170B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.436366e-02	ci left: 5.556165e-01	ci right 5.751454e-01	k: 5654	n:10000
Cons ci ratio: 6.606290e-02	ci left: 2.517205e-01	ci right 2.690193e-01	k: 2603	n:10000
KS ci ratio: 2.742813e-02	ci left: 6.619944e-01	ci right 6.805058e-01	k: 6713	n:10000
TMEM170B   10000 perm   1 sec   (6916 perm/sec)   p_kst 6.713000e-01   p_cons 2.603000e-01   p_joint 5.654000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM170B.3_411_10000_0.6713_0.2603_0.5654.png
                gene_name: TMEM170B
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 33 percent done.
TMEM177
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.686376e-02	ci left: 1.984054e-01	ci right 2.143660e-01	k: 2063	n:10000
Cons ci ratio: 1.246706e-02	ci left: 9.023712e-01	ci right 9.137898e-01	k: 9082	n:10000
KS ci ratio: 1.059997e-01	ci left: 1.138876e-01	ci right 1.267345e-01	k: 1202	n:10000
TMEM177   10000 perm   2 sec   (6490 perm/sec)   p_kst 1.202000e-01   p_cons 9.082000e-01   p_joint 2.063000e-01

Joint ci ratio: 4.688426e-02	ci left: 2.528893e-01	ci right 2.650808e-01	k: 5179	n:20000
Cons ci ratio: 8.285994e-03	ci left: 9.141115e-01	ci right 9.217665e-01	k: 18360	n:20000
KS ci ratio: 7.590801e-02	ci left: 1.131663e-01	ci right 1.221451e-01	k: 2352	n:20000
TMEM177   20000 perm   4 sec   (5685 perm/sec)   p_kst 1.176000e-01   p_cons 9.180000e-01   p_joint 2.589500e-01

Outputting figure to mutsig2_images.part000000000177/TMEM177.3_940_20000_0.1176_0.918_0.25895.png
                gene_name: TMEM177
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 36 percent done.
TMEM184C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.182125e-02	ci left: 4.577814e-01	ci right 4.774375e-01	k: 4676	n:10000
Cons ci ratio: 8.499247e-02	ci left: 1.678931e-01	ci right 1.828965e-01	k: 1753	n:10000
KS ci ratio: 4.137052e-02	ci left: 4.631735e-01	ci right 4.828422e-01	k: 4730	n:10000
TMEM184C   10000 perm   1 sec   (6742 perm/sec)   p_kst 4.730000e-01   p_cons 1.753000e-01   p_joint 4.676000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM184C.3_1357_10000_0.473_0.1753_0.4676.png
                gene_name: TMEM184C
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 39 percent done.
TMEM194A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.653018e-03	ci left: 9.381717e-01	ci right 9.473683e-01	k: 9429	n:10000
Cons ci ratio: 1.185224e-02	ci left: 9.107001e-01	ci right 9.216561e-01	k: 9163	n:10000
KS ci ratio: 1.318628e-02	ci left: 8.923120e-01	ci right 9.042548e-01	k: 8984	n:10000
TMEM194A   10000 perm   2 sec   (6016 perm/sec)   p_kst 8.984000e-01   p_cons 9.163000e-01   p_joint 9.429000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM194A.3_1371_10000_0.8984_0.9163_0.9429.png
                gene_name: TMEM194A
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 42 percent done.
TMEM198
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.132045e-02	ci left: 2.236571e-01	ci right 2.402993e-01	k: 2319	n:10000
Cons ci ratio: 4.150350e-02	ci left: 4.615758e-01	ci right 4.812409e-01	k: 4714	n:10000
KS ci ratio: 1.191234e-01	ci left: 9.185115e-02	ci right 1.035844e-01	k: 976	n:10000
TMEM198   10000 perm   2 sec   (6409 perm/sec)   p_kst 9.760000e-02   p_cons 4.714000e-01   p_joint 2.319000e-01

Joint ci ratio: 4.799680e-02	ci left: 2.440601e-01	ci right 2.561126e-01	k: 5001	n:20000
Cons ci ratio: 3.015404e-02	ci left: 4.510266e-01	ci right 4.648857e-01	k: 9159	n:20000
KS ci ratio: 8.433034e-02	ci left: 9.337356e-02	ci right 1.016439e-01	k: 1949	n:20000
TMEM198   20000 perm   4 sec   (5632 perm/sec)   p_kst 9.745000e-02   p_cons 4.579500e-01   p_joint 2.500500e-01

Outputting figure to mutsig2_images.part000000000177/TMEM198.3_1099_20000_0.09745_0.45795_0.25005.png
                gene_name: TMEM198
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 44 percent done.
TMEM214
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.221968e-01	ci left: 8.757121e-02	ci right 9.906697e-02	k: 932	n:10000
Cons ci ratio: 1.348616e-01	ci left: 7.262363e-02	ci right 8.322381e-02	k: 778	n:10000
KS ci ratio: 9.564886e-02	ci left: 1.368792e-01	ci right 1.507290e-01	k: 1437	n:10000
TMEM214   10000 perm   2 sec   (6180 perm/sec)   p_kst 1.437000e-01   p_cons 7.780000e-02   p_joint 9.320000e-02

Joint ci ratio: 9.428489e-02	ci left: 7.578721e-02	ci right 8.333556e-02	k: 1590	n:20000
Cons ci ratio: 9.668205e-02	ci left: 7.226644e-02	ci right 7.965740e-02	k: 1518	n:20000
KS ci ratio: 6.670328e-02	ci left: 1.423162e-01	ci right 1.521866e-01	k: 2944	n:20000
TMEM214   20000 perm   4 sec   (5455 perm/sec)   p_kst 1.472000e-01   p_cons 7.590000e-02   p_joint 7.950000e-02

Outputting figure to mutsig2_images.part000000000177/TMEM214.3_2138_20000_0.1472_0.0759_0.0795.png
                gene_name: TMEM214
               theta_stop: 0.097 
                    nperm: 20000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.072 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.080 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.083 

Current progress: 47 percent done.
TMEM31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.409025e-02	ci left: 2.105324e-01	ci right 2.268318e-01	k: 2186	n:10000
Cons ci ratio: 2.468708e-02	ci left: 7.070498e-01	ci right 7.248243e-01	k: 7160	n:10000
KS ci ratio: 1.066050e-01	ci left: 1.127155e-01	ci right 1.255073e-01	k: 1190	n:10000
TMEM31   10000 perm   2 sec   (6539 perm/sec)   p_kst 1.190000e-01   p_cons 7.160000e-01   p_joint 2.186000e-01

Joint ci ratio: 2.850652e-02	ci left: 4.790007e-01	ci right 4.929034e-01	k: 9719	n:20000
Cons ci ratio: 1.742245e-02	ci left: 7.104996e-01	ci right 7.230374e-01	k: 14336	n:20000
KS ci ratio: 7.415097e-02	ci left: 1.180354e-01	ci right 1.271746e-01	k: 2451	n:20000
TMEM31   20000 perm   4 sec   (5658 perm/sec)   p_kst 1.225500e-01   p_cons 7.168000e-01   p_joint 4.859500e-01

Outputting figure to mutsig2_images.part000000000177/TMEM31.3_515_20000_0.12255_0.7168_0.48595.png
                gene_name: TMEM31
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.49 

Current progress: 50 percent done.
TMEM156
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.335166e-02	ci left: 8.899537e-01	ci right 9.020145e-01	k: 8961	n:10000
Cons ci ratio: 3.531015e-02	ci left: 5.421894e-01	ci right 5.617803e-01	k: 5520	n:10000
KS ci ratio: 3.898779e-03	ci left: 9.881795e-01	ci right 9.921271e-01	k: 9903	n:10000
TMEM156   10000 perm   2 sec   (6589 perm/sec)   p_kst 9.903000e-01   p_cons 5.520000e-01   p_joint 8.961000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM156.2_915_10000_0.9903_0.552_0.8961.png
                gene_name: TMEM156
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 53 percent done.
TMEM161A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.656271e-02	ci left: 5.248649e-01	ci right 5.445149e-01	k: 5347	n:10000
Cons ci ratio: 1.664198e-03	ci left: 9.972795e-01	ci right 9.990094e-01	k: 9983	n:10000
KS ci ratio: 7.376657e-02	ci left: 2.120120e-01	ci right 2.283513e-01	k: 2201	n:10000
TMEM161A   10000 perm   2 sec   (6545 perm/sec)   p_kst 2.201000e-01   p_cons 9.983000e-01   p_joint 5.347000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM161A.2_1488_10000_0.2201_0.9983_0.5347.png
                gene_name: TMEM161A
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 56 percent done.
TMEM161B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.898779e-03	ci left: 9.881795e-01	ci right 9.921271e-01	k: 9903	n:10000
Cons ci ratio: 3.583430e-02	ci left: 5.348776e-01	ci right 5.544964e-01	k: 5447	n:10000
KS ci ratio: 4.818124e-02	ci left: 3.885863e-01	ci right 4.078731e-01	k: 3982	n:10000
TMEM161B   10000 perm   2 sec   (6198 perm/sec)   p_kst 3.982000e-01   p_cons 5.447000e-01   p_joint 9.903000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM161B.2_1512_10000_0.3982_0.5447_0.9903.png
                gene_name: TMEM161B
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 58 percent done.
TMEM165
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.049311e-02	ci left: 4.738613e-01	ci right 4.935482e-01	k: 4837	n:10000
Cons ci ratio: 1.423304e-01	ci left: 6.546168e-02	ci right 7.559023e-02	k: 704	n:10000
KS ci ratio: 3.250553e-02	ci left: 5.827935e-01	ci right 6.021526e-01	k: 5925	n:10000
TMEM165   10000 perm   1 sec   (6782 perm/sec)   p_kst 5.925000e-01   p_cons 7.040000e-02   p_joint 4.837000e-01

Joint ci ratio: 3.315875e-02	ci left: 4.044687e-01	ci right 4.181571e-01	k: 8226	n:20000
Cons ci ratio: 1.003390e-01	ci left: 6.733170e-02	ci right 7.449365e-02	k: 1417	n:20000
KS ci ratio: 2.279627e-02	ci left: 5.896621e-01	ci right 6.033098e-01	k: 11930	n:20000
TMEM165   20000 perm   3 sec   (5883 perm/sec)   p_kst 5.965000e-01   p_cons 7.085000e-02   p_joint 4.113000e-01

Joint ci ratio: 2.824145e-02	ci left: 3.855055e-01	ci right 3.965823e-01	k: 11731	n:30000
Cons ci ratio: 8.266141e-02	ci left: 6.684362e-02	ci right 7.264003e-02	k: 2091	n:30000
KS ci ratio: 1.866759e-02	ci left: 5.895197e-01	ci right 6.006619e-01	k: 17853	n:30000
TMEM165   30000 perm   5 sec   (5508 perm/sec)   p_kst 5.951000e-01   p_cons 6.970000e-02   p_joint 3.910333e-01

Outputting figure to mutsig2_images.part000000000177/TMEM165.2_999_30000_0.5951_0.0697_0.39103.png
                gene_name: TMEM165
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 61 percent done.
TMEM171
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.921421e-02	ci left: 7.984155e-01	ci right 8.140057e-01	k: 8063	n:10000
Cons ci ratio: 5.972212e-02	ci left: 2.920188e-01	ci right 3.100972e-01	k: 3010	n:10000
KS ci ratio: 6.281241e-02	ci left: 2.714129e-01	ci right 2.891153e-01	k: 2802	n:10000
TMEM171   10000 perm   1 sec   (6712 perm/sec)   p_kst 2.802000e-01   p_cons 3.010000e-01   p_joint 8.063000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM171.2_987_10000_0.2802_0.301_0.8063.png
                gene_name: TMEM171
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 64 percent done.
TMEM174
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.221075e-02	ci left: 2.752748e-01	ci right 2.930511e-01	k: 2841	n:10000
Cons ci ratio: 1.595841e-01	ci left: 5.234307e-02	ci right 6.151717e-02	k: 568	n:10000
KS ci ratio: 7.160178e-02	ci left: 2.222750e-01	ci right 2.388823e-01	k: 2305	n:10000
TMEM174   10000 perm   1 sec   (6904 perm/sec)   p_kst 2.305000e-01   p_cons 5.680000e-02   p_joint 2.841000e-01

Joint ci ratio: 2.059669e-02	ci left: 6.375695e-01	ci right 6.508885e-01	k: 12885	n:20000
Cons ci ratio: 1.099548e-01	ci left: 5.645556e-02	ci right 6.307314e-02	k: 1194	n:20000
KS ci ratio: 4.989977e-02	ci left: 2.298810e-01	ci right 2.416959e-01	k: 4715	n:20000
TMEM174   20000 perm   3 sec   (6049 perm/sec)   p_kst 2.357500e-01   p_cons 5.970000e-02   p_joint 6.442500e-01

Joint ci ratio: 3.300179e-02	ci left: 3.145565e-01	ci right 3.251451e-01	k: 9595	n:30000
Cons ci ratio: 8.984505e-02	ci left: 5.697974e-02	ci right 6.237259e-02	k: 1789	n:30000
KS ci ratio: 4.075066e-02	ci left: 2.309063e-01	ci right 2.405450e-01	k: 7071	n:30000
TMEM174   30000 perm   5 sec   (5714 perm/sec)   p_kst 2.357000e-01   p_cons 5.963333e-02   p_joint 3.198333e-01

Outputting figure to mutsig2_images.part000000000177/TMEM174.2_740_30000_0.2357_0.059633_0.31983.png
                gene_name: TMEM174
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 67 percent done.
TMEM175
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.917731e-02	ci left: 7.990245e-01	ci right 8.145964e-01	k: 8069	n:10000
Cons ci ratio: 3.930400e-02	ci left: 4.887518e-01	ci right 5.084490e-01	k: 4986	n:10000
KS ci ratio: 6.637301e-02	ci left: 2.499404e-01	ci right 2.672005e-01	k: 2585	n:10000
TMEM175   10000 perm   2 sec   (6321 perm/sec)   p_kst 2.585000e-01   p_cons 4.986000e-01   p_joint 8.069000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM175.2_1555_10000_0.2585_0.4986_0.8069.png
                gene_name: TMEM175
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 69 percent done.
TMEM180
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.838591e-02	ci left: 8.120224e-01	ci right 8.271909e-01	k: 8197	n:10000
Cons ci ratio: 4.563429e-02	ci left: 4.147857e-01	ci right 4.342583e-01	k: 4245	n:10000
KS ci ratio: 1.193945e-01	ci left: 9.146191e-02	ci right 1.031739e-01	k: 972	n:10000
TMEM180   10000 perm   2 sec   (6272 perm/sec)   p_kst 9.720000e-02   p_cons 4.245000e-01   p_joint 8.197000e-01

Joint ci ratio: 7.089269e-02	ci left: 1.278792e-01	ci right 1.373279e-01	k: 2651	n:20000
Cons ci ratio: 3.253682e-02	ci left: 4.136456e-01	ci right 4.273775e-01	k: 8410	n:20000
KS ci ratio: 8.276387e-02	ci left: 9.666079e-02	ci right 1.050557e-01	k: 2016	n:20000
TMEM180   20000 perm   4 sec   (5544 perm/sec)   p_kst 1.008000e-01   p_cons 4.205000e-01   p_joint 1.325500e-01

Outputting figure to mutsig2_images.part000000000177/TMEM180.2_1586_20000_0.1008_0.4205_0.13255.png
                gene_name: TMEM180
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 72 percent done.
TMEM183A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.583094e-02	ci left: 4.126927e-01	ci right 4.321525e-01	k: 4224	n:10000
Cons ci ratio: 4.143695e-02	ci left: 4.623746e-01	ci right 4.820416e-01	k: 4722	n:10000
KS ci ratio: 1.920312e-01	ci left: 3.614841e-02	ci right 4.392246e-02	k: 399	n:10000
TMEM183A   10000 perm   2 sec   (6260 perm/sec)   p_kst 3.990000e-02   p_cons 4.722000e-01   p_joint 4.224000e-01

Joint ci ratio: 7.461996e-02	ci left: 1.167073e-01	ci right 1.258032e-01	k: 2424	n:20000
Cons ci ratio: 2.907154e-02	ci left: 4.692073e-01	ci right 4.830997e-01	k: 9523	n:20000
KS ci ratio: 1.353497e-01	ci left: 3.751972e-02	ci right 4.301496e-02	k: 804	n:20000
TMEM183A   20000 perm   4 sec   (5588 perm/sec)   p_kst 4.020000e-02   p_cons 4.761500e-01   p_joint 1.212000e-01

Joint ci ratio: 4.011997e-02	ci left: 2.365330e-01	ci right 2.462504e-01	k: 7241	n:30000
Cons ci ratio: 2.386549e-02	ci left: 4.678028e-01	ci right 4.791356e-01	k: 14204	n:30000
KS ci ratio: 1.107286e-01	ci left: 3.787542e-02	ci right 4.234753e-02	k: 1202	n:30000
TMEM183A   30000 perm   6 sec   (5356 perm/sec)   p_kst 4.006667e-02   p_cons 4.734667e-01   p_joint 2.413667e-01

Joint ci ratio: 3.375901e-02	ci left: 2.478255e-01	ci right 2.563605e-01	k: 10083	n:40000
Cons ci ratio: 2.077718e-02	ci left: 4.659482e-01	ci right 4.757560e-01	k: 18834	n:40000
KS ci ratio: 9.639606e-02	ci left: 3.778311e-02	ci right 4.163408e-02	k: 1587	n:40000
TMEM183A   40000 perm   8 sec   (5184 perm/sec)   p_kst 3.967500e-02   p_cons 4.708500e-01   p_joint 2.520750e-01

Outputting figure to mutsig2_images.part000000000177/TMEM183A.2_1163_40000_0.039675_0.47085_0.25207.png
                gene_name: TMEM183A
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 75 percent done.
TMEM185A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.229247e-01	ci left: 8.659902e-02	ci right 9.803975e-02	k: 922	n:10000
Cons ci ratio: 1.840292e-01	ci left: 3.939440e-02	ci right 4.747430e-02	k: 433	n:10000
KS ci ratio: 8.830905e-02	ci left: 1.572823e-01	ci right 1.719136e-01	k: 1645	n:10000
TMEM185A   10000 perm   2 sec   (6541 perm/sec)   p_kst 1.645000e-01   p_cons 4.330000e-02   p_joint 9.220000e-02

Joint ci ratio: 1.505158e-01	ci left: 3.032647e-02	ci right 3.531057e-02	k: 655	n:20000
Cons ci ratio: 1.311613e-01	ci left: 3.993964e-02	ci right 4.559426e-02	k: 854	n:20000
KS ci ratio: 6.194998e-02	ci left: 1.616077e-01	ci right 1.719893e-01	k: 3335	n:20000
TMEM185A   20000 perm   3 sec   (5760 perm/sec)   p_kst 1.667500e-01   p_cons 4.270000e-02   p_joint 3.275000e-02

Joint ci ratio: 1.272395e-01	ci left: 2.871225e-02	ci right 3.264600e-02	k: 919	n:30000
Cons ci ratio: 1.069847e-01	ci left: 4.053731e-02	ci right 4.515175e-02	k: 1284	n:30000
KS ci ratio: 5.022724e-02	ci left: 1.645109e-01	ci right 1.730200e-01	k: 5062	n:30000
TMEM185A   30000 perm   5 sec   (5455 perm/sec)   p_kst 1.687333e-01   p_cons 4.280000e-02   p_joint 3.063333e-02

Joint ci ratio: 1.074093e-01	ci left: 3.049156e-02	ci right 3.397679e-02	k: 1288	n:40000
Cons ci ratio: 9.252026e-02	ci left: 4.095944e-02	ci right 4.495726e-02	k: 1717	n:40000
KS ci ratio: 4.340795e-02	ci left: 1.656613e-01	ci right 1.730368e-01	k: 6773	n:40000
TMEM185A   40000 perm   8 sec   (5269 perm/sec)   p_kst 1.693250e-01   p_cons 4.292500e-02   p_joint 3.220000e-02

Joint ci ratio: 9.540662e-02	ci left: 3.109967e-02	ci right 3.423490e-02	k: 1632	n:50000
Cons ci ratio: 8.226371e-02	ci left: 4.165019e-02	ci right 4.524306e-02	k: 2171	n:50000
KS ci ratio: 3.873585e-02	ci left: 1.666969e-01	ci right 1.733015e-01	k: 8499	n:50000
TMEM185A   50000 perm   10 sec   (5121 perm/sec)   p_kst 1.699800e-01   p_cons 4.342000e-02   p_joint 3.264000e-02

Outputting figure to mutsig2_images.part000000000177/TMEM185A.2_1081_50000_0.16998_0.04342_0.03264.png
                gene_name: TMEM185A
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.042 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.033 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 78 percent done.
TMEM20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.164895e-02	ci left: 3.559523e-01	ci right 3.749262e-01	k: 3654	n:10000
Cons ci ratio: 4.812099e-02	ci left: 3.891836e-01	ci right 4.084753e-01	k: 3988	n:10000
KS ci ratio: 5.644165e-02	ci left: 3.161198e-01	ci right 3.345821e-01	k: 3253	n:10000
TMEM20   10000 perm   2 sec   (6620 perm/sec)   p_kst 3.253000e-01   p_cons 3.988000e-01   p_joint 3.654000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM20.2_1110_10000_0.3253_0.3988_0.3654.png
                gene_name: TMEM20
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 81 percent done.
TMEM200C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.382713e-02	ci left: 7.213844e-01	ci right 7.388814e-01	k: 7302	n:10000
KS ci ratio: 9.695188e-02	ci left: 1.336465e-01	ci right 1.473637e-01	k: 1404	n:10000
TMEM200C   10000 perm   2 sec   (6045 perm/sec)   p_kst 1.404000e-01   p_cons 7.302000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000177/TMEM200C.2_1870_10000_0.1404_0.7302_1.png
                gene_name: TMEM200C
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
TMEM202
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.823758e-02	ci left: 3.026276e-01	ci right 3.208822e-01	k: 3117	n:10000
Cons ci ratio: 7.548344e-02	ci left: 2.043197e-01	ci right 2.204482e-01	k: 2123	n:10000
KS ci ratio: 1.268230e-01	ci left: 8.164409e-02	ci right 9.279774e-02	k: 871	n:10000
TMEM202   10000 perm   2 sec   (6607 perm/sec)   p_kst 8.710000e-02   p_cons 2.123000e-01   p_joint 3.117000e-01

Joint ci ratio: 4.599712e-02	ci left: 2.602329e-01	ci right 2.725351e-01	k: 5327	n:20000
Cons ci ratio: 5.334358e-02	ci left: 2.068972e-01	ci right 2.182865e-01	k: 4251	n:20000
KS ci ratio: 8.996207e-02	ci left: 8.278644e-02	ci right 9.063420e-02	k: 1733	n:20000
TMEM202   20000 perm   3 sec   (5814 perm/sec)   p_kst 8.665000e-02   p_cons 2.125500e-01   p_joint 2.663500e-01

Outputting figure to mutsig2_images.part000000000177/TMEM202.2_842_20000_0.08665_0.21255_0.26635.png
                gene_name: TMEM202
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 86 percent done.
TMEM215
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.780800e-02	ci left: 6.558534e-01	ci right 6.744503e-01	k: 6652	n:10000
Cons ci ratio: 7.874268e-02	ci left: 1.907209e-01	ci right 2.064550e-01	k: 1985	n:10000
KS ci ratio: 5.575464e-02	ci left: 3.214794e-01	ci right 3.400192e-01	k: 3307	n:10000
TMEM215   10000 perm   1 sec   (7275 perm/sec)   p_kst 3.307000e-01   p_cons 1.985000e-01   p_joint 6.652000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM215.2_712_10000_0.3307_0.1985_0.6652.png
                gene_name: TMEM215
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 89 percent done.
TMEM22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.173814e-02	ci left: 3.551569e-01	ci right 3.741220e-01	k: 3646	n:10000
Cons ci ratio: 9.905341e-02	ci left: 1.286530e-01	ci right 1.421602e-01	k: 1353	n:10000
KS ci ratio: 5.173814e-02	ci left: 3.551569e-01	ci right 3.741220e-01	k: 3646	n:10000
TMEM22   10000 perm   1 sec   (6840 perm/sec)   p_kst 3.646000e-01   p_cons 1.353000e-01   p_joint 3.646000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM22.2_1243_10000_0.3646_0.1353_0.3646.png
                gene_name: TMEM22
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 92 percent done.
TMEM225
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.539588e-02	ci left: 5.409873e-01	ci right 5.605831e-01	k: 5508	n:10000
Cons ci ratio: 3.699097e-02	ci left: 5.190593e-01	ci right 5.387238e-01	k: 5289	n:10000
KS ci ratio: 3.592106e-02	ci left: 5.336759e-01	ci right 5.532988e-01	k: 5435	n:10000
TMEM225   10000 perm   1 sec   (6907 perm/sec)   p_kst 5.435000e-01   p_cons 5.289000e-01   p_joint 5.508000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM225.2_694_10000_0.5435_0.5289_0.5508.png
                gene_name: TMEM225
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 94 percent done.
TMEM25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.724192e-02	ci left: 6.650151e-01	ci right 6.834832e-01	k: 6743	n:10000
Cons ci ratio: 7.223301e-02	ci left: 2.192151e-01	ci right 2.357440e-01	k: 2274	n:10000
KS ci ratio: 4.393885e-02	ci left: 4.333316e-01	ci right 4.529016e-01	k: 4431	n:10000
TMEM25   10000 perm   2 sec   (6587 perm/sec)   p_kst 4.431000e-01   p_cons 2.274000e-01   p_joint 6.743000e-01

Outputting figure to mutsig2_images.part000000000177/TMEM25.2_1166_10000_0.4431_0.2274_0.6743.png
                gene_name: TMEM25
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.68 

Current progress: 97 percent done.
TMEM33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.438552e-02	ci left: 3.325008e-01	ci right 3.511914e-01	k: 3418	n:10000
Cons ci ratio: 1.472195e-01	ci left: 6.130724e-02	ci right 7.114729e-02	k: 661	n:10000
KS ci ratio: 2.266795e-02	ci left: 7.407845e-01	ci right 7.578701e-01	k: 7494	n:10000
TMEM33   10000 perm   1 sec   (6867 perm/sec)   p_kst 7.494000e-01   p_cons 6.610000e-02   p_joint 3.418000e-01

Joint ci ratio: 4.303636e-02	ci left: 2.868467e-01	ci right 2.995135e-01	k: 5863	n:20000
Cons ci ratio: 1.044829e-01	ci left: 6.230465e-02	ci right 6.922225e-02	k: 1314	n:20000
KS ci ratio: 1.600533e-02	ci left: 7.438874e-01	ci right 7.559399e-01	k: 14999	n:20000
TMEM33   20000 perm   3 sec   (5951 perm/sec)   p_kst 7.499500e-01   p_cons 6.570000e-02   p_joint 2.931500e-01

Joint ci ratio: 4.321958e-02	ci left: 2.105276e-01	ci right 2.198609e-01	k: 6455	n:30000
Cons ci ratio: 8.674324e-02	ci left: 6.096215e-02	ci right 6.652270e-02	k: 1911	n:30000
KS ci ratio: 1.302595e-02	ci left: 7.462336e-01	ci right 7.560511e-01	k: 22535	n:30000
TMEM33   30000 perm   5 sec   (5626 perm/sec)   p_kst 7.511667e-01   p_cons 6.370000e-02   p_joint 2.151667e-01

Outputting figure to mutsig2_images.part000000000177/TMEM33.2_772_30000_0.75117_0.0637_0.21517.png
                gene_name: TMEM33
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.064 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.067 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000177
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 177 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1429>
Subject: Job 9894183: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1429>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000178> was used as the working directory.
Started at Sat Oct  6 00:32:59 2012
Results reported at Sat Oct  6 04:11:41 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000178.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000178.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 178  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000178.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  13835.05 sec.
    Max Memory :      3687 MB
    Max Swap   :      5989 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
178
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 178
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 178: processing genes 15958 - 16047
Calculating significance of each gene.
Using projection method.
15958	TMEM35	5.714207e-01
15959	TMEM37	6.011250e-01
15960	TMEM38A	5.401042e-01
15961	TMEM38B	3.421479e-01
15962	TMEM39A	9.087188e-01
15963	TMEM39B	1
15964	TMEM40	4.797277e-01
15965	TMEM41A	6.420528e-01
15966	TMEM41B	3.596050e-01
15967	TMEM42	2.311278e-02
15968	TMEM43	5.121853e-02
15969	TMEM44	7.449657e-01
15970	TMEM45A	1
15971	TMEM45B	4.979618e-01
15972	TMEM47	4.862948e-01
15973	TMEM48	5.657652e-01
15974	TMEM49	9.167420e-02
15975	TMEM5	5.668970e-01
15976	TMEM50A	4.305179e-01
15977	TMEM50B	1
15978	TMEM51	1.545860e-01
15979	TMEM52	1
15980	TMEM53	8.365072e-01
15981	TMEM54	1
15982	TMEM55A	1.995623e-02
15983	TMEM55B	5.225225e-01
15984	TMEM56	5.407511e-01
15985	TMEM57	1.082325e-02
15986	TMEM59	1
15987	TMEM59L	7.223091e-01
15988	TMEM60	1
15989	TMEM61	1
15990	TMEM62	5.606600e-01
15991	TMEM63A	4.536936e-01
15992	TMEM63B	5.531052e-01
15993	TMEM63C	9.015439e-01
15994	TMEM64	5.271951e-01
15995	TMEM65	2.501661e-01
15996	TMEM66	6.710746e-01
15997	TMEM67	8.226642e-01
15998	TMEM68	1
15999	TMEM69	1
16000/18030 16000	TMEM70	6.035572e-01
16001	TMEM71	1.121061e-01
16002	TMEM72	1
16003	TMEM74	2.301721e-03
16004	TMEM79	8.218506e-02
16005	TMEM80	1
16006	TMEM81	4.737643e-01
16007	TMEM82	1
16008	TMEM85	4.494349e-01
16009	TMEM86A	1.650370e-01
16010	TMEM86B	1
16011	TMEM87A	8.450040e-01
16012	TMEM87B	5.968411e-01
16013	TMEM88	1
16014	TMEM89	1
16015	TMEM8A	9.324705e-01
16016	TMEM8B	8.686263e-01
16017	TMEM8C	4.812396e-01
16018	TMEM9	1
16019	TMEM90A	1
16020	TMEM90B	3.144000e-01
16021	TMEM91	1
16022	TMEM92	4.024970e-01
16023	TMEM93	1
16024	TMEM95	4.184018e-01
16025	TMEM97	1
16026	TMEM98	1
16027	TMEM99	2.934924e-01
16028	TMEM9B	1
16029	TMF1	8.564093e-01
16030	TMIE	1
16031	TMIGD1	7.056917e-01
16032	TMIGD2	2.159584e-01
16033	TMLHE	3.611908e-01
16034	TMOD1	3.268368e-01
16035	TMOD2	3.838177e-01
16036	TMOD3	1
16037	TMOD4	7.289987e-01
16038	TMPO	4.670791e-01
16039	TMPPE	1.297914e-01
16040	TMPRSS11A	8.559086e-04
16041	TMPRSS11B	3.316042e-01
16042	TMPRSS11D	7.375711e-01
16043	TMPRSS11E	1
16044	TMPRSS11F	2.485485e-01
16045	TMPRSS12	2.846988e-01
16046	TMPRSS13	3.741686e-01
16047	TMPRSS15	5.830021e-01
Done

Running MutSig 2:
Scatter job 178: processing genes 15958 - 16047
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TMPRSS15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.926594e-02	ci left: 1.886528e-01	ci right 2.043244e-01	k: 1964	n:10000
Cons ci ratio: 6.009309e-02	ci left: 2.894418e-01	ci right 3.074757e-01	k: 2984	n:10000
KS ci ratio: 1.018556e-01	ci left: 1.223911e-01	ci right 1.356258e-01	k: 1289	n:10000
TMPRSS15   10000 perm   3 sec   (3962 perm/sec)   p_kst 1.289000e-01   p_cons 2.984000e-01   p_joint 1.964000e-01

Joint ci ratio: 6.358125e-02	ci left: 1.545984e-01	ci right 1.648007e-01	k: 3193	n:20000
Cons ci ratio: 4.344482e-02	ci left: 2.829721e-01	ci right 2.955892e-01	k: 5785	n:20000
KS ci ratio: 7.244374e-02	ci left: 1.230546e-01	ci right 1.323539e-01	k: 2553	n:20000
TMPRSS15   20000 perm   11 sec   (1848 perm/sec)   p_kst 1.276500e-01   p_cons 2.892500e-01   p_joint 1.596500e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS15.10_3160_20000_0.12765_0.28925_0.15965.png
                gene_name: TMPRSS15
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 2 percent done.
TMEM57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.107331e-02	ci left: 7.674962e-01	ci right 7.839429e-01	k: 7758	n:10000
KS ci ratio: 1.204417e-02	ci left: 9.081279e-01	ci right 9.192297e-01	k: 9138	n:10000
TMEM57   10000 perm   2 sec   (4983 perm/sec)   p_kst 9.138000e-01   p_cons 7.758000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMEM57.8_2039_10000_0.9138_0.7758_1.png
                gene_name: TMEM57
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 5 percent done.
TMPRSS11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.659946e-02	ci left: 5.243644e-01	ci right 5.440157e-01	k: 5342	n:10000
Cons ci ratio: 3.439163e-02	ci left: 5.552156e-01	ci right 5.747465e-01	k: 5650	n:10000
KS ci ratio: 4.554104e-02	ci left: 4.157825e-01	ci right 4.352610e-01	k: 4255	n:10000
TMPRSS11A   10000 perm   2 sec   (5454 perm/sec)   p_kst 4.255000e-01   p_cons 5.650000e-01   p_joint 5.342000e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS11A.7_1306_10000_0.4255_0.565_0.5342.png
                gene_name: TMPRSS11A
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 7 percent done.
TMEM74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.813948e-02	ci left: 6.505193e-01	ci right 6.691875e-01	k: 6599	n:10000
Cons ci ratio: 3.287702e-02	ci left: 5.772755e-01	ci right 5.966738e-01	k: 5870	n:10000
KS ci ratio: 4.484940e-02	ci left: 4.232593e-01	ci right 4.427798e-01	k: 4330	n:10000
TMEM74   10000 perm   2 sec   (6507 perm/sec)   p_kst 4.330000e-01   p_cons 5.870000e-01   p_joint 6.599000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM74.6_922_10000_0.433_0.587_0.6599.png
                gene_name: TMEM74
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 10 percent done.
TMEM55A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.121886e-01	ci left: 2.949052e-02	ci right 3.658492e-02	k: 329	n:10000
Cons ci ratio: 7.726487e-02	ci left: 1.967302e-01	ci right 2.126422e-01	k: 2046	n:10000
KS ci ratio: 1.844739e-01	ci left: 3.920326e-02	ci right 4.726556e-02	k: 431	n:10000
TMEM55A   10000 perm   2 sec   (5929 perm/sec)   p_kst 4.310000e-02   p_cons 2.046000e-01   p_joint 3.290000e-02

Joint ci ratio: 1.337986e-01	ci left: 3.839058e-02	ci right 4.394383e-02	k: 822	n:20000
Cons ci ratio: 5.439305e-02	ci left: 2.005120e-01	ci right 2.117736e-01	k: 4122	n:20000
KS ci ratio: 1.325438e-01	ci left: 3.911656e-02	ci right 4.471761e-02	k: 837	n:20000
TMEM55A   20000 perm   4 sec   (5351 perm/sec)   p_kst 4.185000e-02   p_cons 2.061000e-01   p_joint 4.110000e-02

Joint ci ratio: 1.139233e-01	ci left: 3.579979e-02	ci right 4.015694e-02	k: 1138	n:30000
Cons ci ratio: 4.409106e-02	ci left: 2.039148e-01	ci right 2.131417e-01	k: 6255	n:30000
KS ci ratio: 1.095016e-01	ci left: 3.871914e-02	ci right 4.323697e-02	k: 1228	n:30000
TMEM55A   30000 perm   6 sec   (5084 perm/sec)   p_kst 4.093333e-02   p_cons 2.085000e-01   p_joint 3.793333e-02

Joint ci ratio: 7.970191e-02	ci left: 5.474771e-02	ci right 5.931687e-02	k: 2280	n:40000
Cons ci ratio: 3.830691e-02	ci left: 2.034852e-01	ci right 2.114573e-01	k: 8298	n:40000
KS ci ratio: 9.500292e-02	ci left: 3.888223e-02	ci right 4.278478e-02	k: 1632	n:40000
TMEM55A   40000 perm   8 sec   (4916 perm/sec)   p_kst 4.080000e-02   p_cons 2.074500e-01   p_joint 5.700000e-02

Outputting figure to mutsig2_images.part000000000178/TMEM55A.5_802_40000_0.0408_0.20745_0.057.png
                gene_name: TMEM55A
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.059 

Current progress: 12 percent done.
TMEM63B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.564880e-02	ci left: 6.911127e-01	ci right 7.091706e-01	k: 7002	n:10000
Cons ci ratio: 5.881241e-02	ci left: 2.984627e-01	ci right 3.166495e-01	k: 3075	n:10000
KS ci ratio: 3.533157e-02	ci left: 5.418888e-01	ci right 5.614810e-01	k: 5517	n:10000
TMEM63B   10000 perm   2 sec   (5008 perm/sec)   p_kst 5.517000e-01   p_cons 3.075000e-01   p_joint 7.002000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM63B.5_2591_10000_0.5517_0.3075_0.7002.png
                gene_name: TMEM63B
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 14 percent done.
TMF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.107643e-01	ci left: 1.051021e-01	ci right 1.175253e-01	k: 1112	n:10000
Cons ci ratio: 1.323893e-01	ci left: 7.524035e-02	ci right 8.600545e-02	k: 805	n:10000
KS ci ratio: 7.472467e-02	ci left: 2.076722e-01	ci right 2.238937e-01	k: 2157	n:10000
TMF1   10000 perm   2 sec   (5040 perm/sec)   p_kst 2.157000e-01   p_cons 8.050000e-02   p_joint 1.112000e-01

Joint ci ratio: 7.265587e-02	ci left: 1.224148e-01	ci right 1.316940e-01	k: 2540	n:20000
Cons ci ratio: 9.765953e-02	ci left: 7.089790e-02	ci right 7.822636e-02	k: 1490	n:20000
KS ci ratio: 5.302696e-02	ci left: 2.088775e-01	ci right 2.203056e-01	k: 4291	n:20000
TMF1   20000 perm   4 sec   (4527 perm/sec)   p_kst 2.145500e-01   p_cons 7.450000e-02   p_joint 1.270000e-01

Outputting figure to mutsig2_images.part000000000178/TMF1.5_3350_20000_0.21455_0.0745_0.127.png
                gene_name: TMF1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 17 percent done.
TMEM43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.229981e-01	ci left: 8.650182e-02	ci right 9.793702e-02	k: 921	n:10000
Cons ci ratio: 2.357589e-01	ci left: 2.372311e-02	ci right 3.015646e-02	k: 268	n:10000
KS ci ratio: 1.002121e-01	ci left: 1.260106e-01	ci right 1.394041e-01	k: 1326	n:10000
TMEM43   10000 perm   2 sec   (6230 perm/sec)   p_kst 1.326000e-01   p_cons 2.680000e-02   p_joint 9.210000e-02

Joint ci ratio: 1.160139e-01	ci left: 5.085900e-02	ci right 5.717145e-02	k: 1079	n:20000
Cons ci ratio: 1.659200e-01	ci left: 2.489359e-02	ci right 2.944527e-02	k: 542	n:20000
KS ci ratio: 7.110923e-02	ci left: 1.271899e-01	ci right 1.366174e-01	k: 2637	n:20000
TMEM43   20000 perm   4 sec   (5503 perm/sec)   p_kst 1.318500e-01   p_cons 2.710000e-02   p_joint 5.395000e-02

Joint ci ratio: 1.375272e-01	ci left: 2.455070e-02	ci right 2.820847e-02	k: 790	n:30000
Cons ci ratio: 1.365551e-01	ci left: 2.490510e-02	ci right 2.858732e-02	k: 801	n:30000
KS ci ratio: 5.816241e-02	ci left: 1.276621e-01	ci right 1.353428e-01	k: 3944	n:30000
TMEM43   30000 perm   6 sec   (5215 perm/sec)   p_kst 1.314667e-01   p_cons 2.670000e-02   p_joint 2.633333e-02

Joint ci ratio: 8.305625e-02	ci left: 5.055493e-02	ci right 5.496028e-02	k: 2109	n:40000
Cons ci ratio: 1.188520e-01	ci left: 2.489938e-02	ci right 2.806987e-02	k: 1058	n:40000
KS ci ratio: 5.049747e-02	ci left: 1.276090e-01	ci right 1.342447e-01	k: 5236	n:40000
TMEM43   40000 perm   8 sec   (5036 perm/sec)   p_kst 1.309000e-01   p_cons 2.645000e-02   p_joint 5.272500e-02

Joint ci ratio: 9.095222e-02	ci left: 3.418849e-02	ci right 3.746568e-02	k: 1790	n:50000
Cons ci ratio: 1.062120e-01	ci left: 2.510970e-02	ci right 2.794563e-02	k: 1325	n:50000
KS ci ratio: 4.526290e-02	ci left: 1.274797e-01	ci right 1.334033e-01	k: 6521	n:50000
TMEM43   50000 perm   10 sec   (4878 perm/sec)   p_kst 1.304200e-01   p_cons 2.650000e-02   p_joint 3.580000e-02

Joint ci ratio: 8.521496e-02	ci left: 3.261310e-02	ci right 3.553219e-02	k: 2043	n:60000
Cons ci ratio: 9.609911e-02	ci left: 2.568512e-02	ci right 2.829424e-02	k: 1618	n:60000
KS ci ratio: 4.112428e-02	ci left: 1.288055e-01	ci right 1.342302e-01	k: 7890	n:60000
TMEM43   60000 perm   13 sec   (4762 perm/sec)   p_kst 1.315000e-01   p_cons 2.696667e-02   p_joint 3.405000e-02

Outputting figure to mutsig2_images.part000000000178/TMEM43.4_1251_60000_0.1315_0.026967_0.03405.png
                gene_name: TMEM43
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.027 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.036 

Current progress: 19 percent done.
TMEM49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.847932e-03	ci left: 9.472103e-01	ci right 9.557242e-01	k: 9516	n:10000
Cons ci ratio: 3.005765e-02	ci left: 6.201489e-01	ci right 6.391755e-01	k: 6297	n:10000
KS ci ratio: 2.867409e-02	ci left: 6.419672e-01	ci right 6.607446e-01	k: 6514	n:10000
TMEM49   10000 perm   2 sec   (5933 perm/sec)   p_kst 6.514000e-01   p_cons 6.297000e-01   p_joint 9.516000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM49.4_1265_10000_0.6514_0.6297_0.9516.png
                gene_name: TMEM49
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 21 percent done.
TMEM63A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.516717e-02	ci left: 6.990796e-01	ci right 7.169991e-01	k: 7081	n:10000
Cons ci ratio: 5.436136e-02	ci left: 3.326995e-01	ci right 3.513926e-01	k: 3420	n:10000
KS ci ratio: 1.884446e-02	ci left: 8.045063e-01	ci right 8.199113e-01	k: 8123	n:10000
TMEM63A   10000 perm   2 sec   (5223 perm/sec)   p_kst 8.123000e-01   p_cons 3.420000e-01   p_joint 7.081000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM63A.4_2512_10000_0.8123_0.342_0.7081.png
                gene_name: TMEM63A
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 24 percent done.
TMEM67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.844174e-02	ci left: 3.011400e-01	ci right 3.193706e-01	k: 3102	n:10000
Cons ci ratio: 6.408154e-02	ci left: 2.634937e-01	ci right 2.810391e-01	k: 2722	n:10000
KS ci ratio: 7.959375e-02	ci left: 1.873727e-01	ci right 2.030052e-01	k: 1951	n:10000
TMEM67   10000 perm   2 sec   (5176 perm/sec)   p_kst 1.951000e-01   p_cons 2.722000e-01   p_joint 3.102000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM67.4_3238_10000_0.1951_0.2722_0.3102.png
                gene_name: TMEM67
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 26 percent done.
TMEM79
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.916000e-02	ci left: 3.790301e-01	ci right 3.982348e-01	k: 3886	n:10000
Cons ci ratio: 9.152397e-02	ci left: 1.478599e-01	ci right 1.621417e-01	k: 1549	n:10000
KS ci ratio: 2.853536e-02	ci left: 6.441804e-01	ci right 6.629301e-01	k: 6536	n:10000
TMEM79   10000 perm   2 sec   (6107 perm/sec)   p_kst 6.536000e-01   p_cons 1.549000e-01   p_joint 3.886000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM79.4_1197_10000_0.6536_0.1549_0.3886.png
                gene_name: TMEM79
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 29 percent done.
TMPO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.434929e-02	ci left: 3.327988e-01	ci right 3.514933e-01	k: 3421	n:10000
Cons ci ratio: 8.472899e-02	ci left: 1.687778e-01	ci right 1.838112e-01	k: 1762	n:10000
KS ci ratio: 4.166204e-02	ci left: 4.596785e-01	ci right 4.793393e-01	k: 4695	n:10000
TMPO   10000 perm   2 sec   (4815 perm/sec)   p_kst 4.695000e-01   p_cons 1.762000e-01   p_joint 3.421000e-01

Outputting figure to mutsig2_images.part000000000178/TMPO.4_2925_10000_0.4695_0.1762_0.3421.png
                gene_name: TMPO
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 31 percent done.
TMPPE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.525849e-02	ci left: 6.975666e-01	ci right 7.155129e-01	k: 7066	n:10000
Cons ci ratio: 2.590558e-02	ci left: 6.868784e-01	ci right 7.050074e-01	k: 6960	n:10000
KS ci ratio: 3.786094e-02	ci left: 5.074522e-01	ci right 5.271377e-01	k: 5173	n:10000
TMPPE   10000 perm   2 sec   (5809 perm/sec)   p_kst 5.173000e-01   p_cons 6.960000e-01   p_joint 7.066000e-01

Outputting figure to mutsig2_images.part000000000178/TMPPE.4_1366_10000_0.5173_0.696_0.7066.png
                gene_name: TMPPE
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 33 percent done.
TMPRSS13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.571839e-01	ci left: 9.776646e-03	ci right 1.411465e-02	k: 118	n:10000
Cons ci ratio: 8.544729e-01	ci left: 1.222067e-03	ci right 3.087156e-03	k: 20	n:10000
KS ci ratio: 5.369981e-01	ci left: 3.885975e-03	ci right 6.813584e-03	k: 52	n:10000
TMPRSS13   10000 perm   2 sec   (5654 perm/sec)   p_kst 5.200000e-03   p_cons 2.000000e-03   p_joint 1.180000e-02

Joint ci ratio: 3.337509e-01	ci left: 5.708210e-03	ci right 8.038631e-03	k: 136	n:20000
Cons ci ratio: 5.971366e-01	ci left: 1.513902e-03	ci right 2.837541e-03	k: 42	n:20000
KS ci ratio: 4.099816e-01	ci left: 3.620038e-03	ci right 5.528410e-03	k: 90	n:20000
TMPRSS13   20000 perm   4 sec   (5035 perm/sec)   p_kst 4.500000e-03   p_cons 2.100000e-03   p_joint 6.800000e-03

Joint ci ratio: 4.015396e-01	ci left: 2.532772e-03	ci right 3.833062e-03	k: 94	n:30000
Cons ci ratio: 4.783612e-01	ci left: 1.701876e-03	ci right 2.798101e-03	k: 66	n:30000
KS ci ratio: 3.329187e-01	ci left: 3.835360e-03	ci right 5.396299e-03	k: 137	n:30000
TMPRSS13   30000 perm   6 sec   (4745 perm/sec)   p_kst 4.566667e-03   p_cons 2.200000e-03   p_joint 3.133333e-03

Joint ci ratio: 3.857467e-01	ci left: 2.079684e-03	ci right 3.094681e-03	k: 102	n:40000
Cons ci ratio: 4.017006e-01	ci left: 1.899444e-03	ci right 2.875048e-03	k: 94	n:40000
KS ci ratio: 2.899043e-01	ci left: 3.890962e-03	ci right 5.232527e-03	k: 181	n:40000
TMPRSS13   40000 perm   9 sec   (4565 perm/sec)   p_kst 4.525000e-03   p_cons 2.350000e-03   p_joint 2.550000e-03

Joint ci ratio: 3.935807e-01	ci left: 1.591500e-03	ci right 2.388100e-03	k: 98	n:50000
Cons ci ratio: 3.487776e-01	ci left: 2.081393e-03	ci right 2.977924e-03	k: 125	n:50000
KS ci ratio: 2.661428e-01	ci left: 3.745401e-03	ci right 4.913300e-03	k: 215	n:50000
TMPRSS13   50000 perm   11 sec   (4456 perm/sec)   p_kst 4.300000e-03   p_cons 2.500000e-03   p_joint 1.960000e-03

Joint ci ratio: 3.717225e-01	ci left: 1.507011e-03	ci right 2.209247e-03	k: 110	n:60000
Cons ci ratio: 3.144524e-01	ci left: 2.177707e-03	ci right 3.004911e-03	k: 154	n:60000
KS ci ratio: 2.411852e-01	ci left: 3.854836e-03	ci right 4.927307e-03	k: 262	n:60000
TMPRSS13   60000 perm   14 sec   (4337 perm/sec)   p_kst 4.366667e-03   p_cons 2.566667e-03   p_joint 1.833333e-03

Joint ci ratio: 4.106575e-01	ci left: 1.033989e-03	ci right 1.580128e-03	k: 90	n:70000
Cons ci ratio: 2.942704e-01	ci left: 2.156911e-03	ci right 2.913838e-03	k: 176	n:70000
KS ci ratio: 2.172717e-01	ci left: 4.125719e-03	ci right 5.144584e-03	k: 323	n:70000
TMPRSS13   70000 perm   16 sec   (4246 perm/sec)   p_kst 4.614286e-03   p_cons 2.514286e-03   p_joint 1.285714e-03

Joint ci ratio: 3.752097e-01	ci left: 1.107559e-03	ci right 1.629681e-03	k: 108	n:80000
Cons ci ratio: 2.870922e-01	ci left: 1.991570e-03	ci right 2.670328e-03	k: 185	n:80000
KS ci ratio: 2.011449e-01	ci left: 4.249713e-03	ci right 5.211746e-03	k: 377	n:80000
TMPRSS13   80000 perm   19 sec   (4161 perm/sec)   p_kst 4.712500e-03   p_cons 2.312500e-03   p_joint 1.350000e-03

Joint ci ratio: 4.275051e-01	ci left: 7.346097e-04	ci right 1.143107e-03	k: 83	n:90000
Cons ci ratio: 2.695459e-01	ci left: 2.028699e-03	ci right 2.670717e-03	k: 210	n:90000
KS ci ratio: 1.890282e-01	ci left: 4.305975e-03	ci right 5.215287e-03	k: 427	n:90000
TMPRSS13   90000 perm   22 sec   (4070 perm/sec)   p_kst 4.744444e-03   p_cons 2.333333e-03   p_joint 9.222222e-04

Joint ci ratio: 4.275253e-01	ci left: 6.611429e-04	ci right 1.028808e-03	k: 83	n:100000
Cons ci ratio: 2.537920e-01	ci left: 2.078141e-03	ci right 2.691293e-03	k: 237	n:100000
KS ci ratio: 1.792439e-01	ci left: 4.333269e-03	ci right 5.195842e-03	k: 475	n:100000
TMPRSS13   100000 perm   25 sec   (3994 perm/sec)   p_kst 4.750000e-03   p_cons 2.370000e-03   p_joint 8.300000e-04

Joint ci ratio: 3.999069e-01	ci left: 6.987878e-04	ci right 1.055649e-03	k: 95	n:110000
Cons ci ratio: 2.451941e-01	ci left: 2.034098e-03	ci right 2.610826e-03	k: 254	n:110000
KS ci ratio: 1.718281e-01	ci left: 4.304377e-03	ci right 5.122074e-03	k: 517	n:110000
TMPRSS13   110000 perm   28 sec   (3916 perm/sec)   p_kst 4.700000e-03   p_cons 2.309091e-03   p_joint 8.636364e-04

Joint ci ratio: 3.860817e-01	ci left: 6.931249e-04	ci right 1.031748e-03	k: 102	n:120000
Cons ci ratio: 2.331572e-01	ci left: 2.076119e-03	ci right 2.631702e-03	k: 281	n:120000
KS ci ratio: 1.640891e-01	ci left: 4.344844e-03	ci right 5.129385e-03	k: 567	n:120000
TMPRSS13   120000 perm   31 sec   (3838 perm/sec)   p_kst 4.725000e-03   p_cons 2.341667e-03   p_joint 8.500000e-04

Joint ci ratio: 3.719096e-01	ci left: 6.954853e-04	ci right 1.019756e-03	k: 110	n:130000
Cons ci ratio: 2.283595e-01	ci left: 2.003380e-03	ci right 2.526910e-03	k: 293	n:130000
KS ci ratio: 1.565479e-01	ci left: 4.424133e-03	ci right 5.182831e-03	k: 623	n:130000
TMPRSS13   130000 perm   34 sec   (3772 perm/sec)   p_kst 4.792308e-03   p_cons 2.253846e-03   p_joint 8.461538e-04

Joint ci ratio: 3.638107e-01	ci left: 6.782197e-04	ci right 9.859195e-04	k: 115	n:140000
Cons ci ratio: 2.213229e-01	ci left: 1.988352e-03	ci right 2.489764e-03	k: 312	n:140000
KS ci ratio: 1.515347e-01	ci left: 4.396556e-03	ci right 5.124189e-03	k: 665	n:140000
TMPRSS13   140000 perm   38 sec   (3712 perm/sec)   p_kst 4.750000e-03   p_cons 2.228571e-03   p_joint 8.214286e-04

Joint ci ratio: 3.577010e-01	ci left: 6.572534e-04	ci right 9.492675e-04	k: 119	n:150000
Cons ci ratio: 2.139325e-01	ci left: 1.994470e-03	ci right 2.478426e-03	k: 334	n:150000
KS ci ratio: 1.460443e-01	ci left: 4.430803e-03	ci right 5.135216e-03	k: 716	n:150000
TMPRSS13   150000 perm   41 sec   (3653 perm/sec)   p_kst 4.773333e-03   p_cons 2.226667e-03   p_joint 7.933333e-04

Joint ci ratio: 3.504774e-01	ci left: 6.446449e-04	ci right 9.239581e-04	k: 124	n:160000
Cons ci ratio: 2.084096e-01	ci left: 1.976365e-03	ci right 2.441968e-03	k: 352	n:160000
KS ci ratio: 1.418548e-01	ci left: 4.412946e-03	ci right 5.092691e-03	k: 759	n:160000
TMPRSS13   160000 perm   44 sec   (3597 perm/sec)   p_kst 4.743750e-03   p_cons 2.200000e-03   p_joint 7.750000e-04

Joint ci ratio: 3.410587e-01	ci left: 6.443260e-04	ci right 9.143458e-04	k: 131	n:170000
Cons ci ratio: 2.041222e-01	ci left: 1.943783e-03	ci right 2.391114e-03	k: 367	n:170000
KS ci ratio: 1.375766e-01	ci left: 4.425847e-03	ci right 5.085335e-03	k: 807	n:170000
TMPRSS13   170000 perm   48 sec   (3540 perm/sec)   p_kst 4.747059e-03   p_cons 2.158824e-03   p_joint 7.705882e-04

Joint ci ratio: 3.477201e-01	ci left: 5.831512e-04	ci right 8.333836e-04	k: 126	n:180000
Cons ci ratio: 1.990499e-01	ci left: 1.936022e-03	ci right 2.369152e-03	k: 386	n:180000
KS ci ratio: 1.333508e-01	ci left: 4.459071e-03	ci right 5.101483e-03	k: 859	n:180000
TMPRSS13   180000 perm   52 sec   (3485 perm/sec)   p_kst 4.772222e-03   p_cons 2.144444e-03   p_joint 7.000000e-04

Joint ci ratio: 3.410728e-01	ci left: 5.764985e-04	ci right 8.181051e-04	k: 131	n:190000
Cons ci ratio: 1.945781e-01	ci left: 1.924194e-03	ci right 2.343860e-03	k: 404	n:190000
KS ci ratio: 1.298501e-01	ci left: 4.463609e-03	ci right 5.088491e-03	k: 906	n:190000
TMPRSS13   190000 perm   55 sec   (3431 perm/sec)   p_kst 4.768421e-03   p_cons 2.126316e-03   p_joint 6.894737e-04

Joint ci ratio: 3.519164e-01	ci left: 5.111504e-04	ci right 7.337385e-04	k: 123	n:200000
Cons ci ratio: 1.894990e-01	ci left: 1.932697e-03	ci right 2.341948e-03	k: 426	n:200000
KS ci ratio: 1.264118e-01	ci left: 4.482418e-03	ci right 5.092072e-03	k: 956	n:200000
TMPRSS13   200000 perm   59 sec   (3381 perm/sec)   p_kst 4.780000e-03   p_cons 2.130000e-03   p_joint 6.150000e-04

Joint ci ratio: 3.771043e-01	ci left: 4.175853e-04	ci right 6.156747e-04	k: 107	n:210000
Cons ci ratio: 1.745743e-01	ci left: 2.186128e-03	ci right 2.608747e-03	k: 502	n:210000
KS ci ratio: 1.237277e-01	ci left: 4.462709e-03	ci right 5.055850e-03	k: 998	n:210000
TMPRSS13   210000 perm   63 sec   (3332 perm/sec)   p_kst 4.752381e-03   p_cons 2.390476e-03   p_joint 5.095238e-04

Joint ci ratio: 4.466463e-01	ci left: 2.721882e-04	ci right 4.323691e-04	k: 76	n:220000
Cons ci ratio: 1.713697e-01	ci left: 2.169382e-03	ci right 2.580269e-03	k: 521	n:220000
KS ci ratio: 1.210908e-01	ci left: 4.453734e-03	ci right 5.032161e-03	k: 1042	n:220000
TMPRSS13   220000 perm   67 sec   (3283 perm/sec)   p_kst 4.736364e-03   p_cons 2.368182e-03   p_joint 3.454545e-04

Joint ci ratio: 4.495796e-01	ci left: 2.564964e-04	ci right 4.087359e-04	k: 75	n:230000
Cons ci ratio: 1.678694e-01	ci left: 2.166652e-03	ci right 2.567792e-03	k: 543	n:230000
KS ci ratio: 1.172153e-01	ci left: 4.555385e-03	ci right 5.126769e-03	k: 1112	n:230000
TMPRSS13   230000 perm   71 sec   (3233 perm/sec)   p_kst 4.834783e-03   p_cons 2.360870e-03   p_joint 3.260870e-04

Joint ci ratio: 4.466529e-01	ci left: 2.495052e-04	ci right 3.963398e-04	k: 76	n:240000
Cons ci ratio: 1.637077e-01	ci left: 2.188203e-03	ci right 2.582301e-03	k: 571	n:240000
KS ci ratio: 1.146675e-01	ci left: 4.567871e-03	ci right 5.127524e-03	k: 1162	n:240000
TMPRSS13   240000 perm   75 sec   (3189 perm/sec)   p_kst 4.841667e-03   p_cons 2.379167e-03   p_joint 3.166667e-04

Joint ci ratio: 5.102793e-01	ci left: 1.761719e-04	ci right 2.999036e-04	k: 58	n:250000
Cons ci ratio: 1.599745e-01	ci left: 2.204303e-03	ci right 2.591378e-03	k: 598	n:250000
KS ci ratio: 1.091150e-01	ci left: 4.855656e-03	ci right 5.419911e-03	k: 1283	n:250000
TMPRSS13   250000 perm   80 sec   (3144 perm/sec)   p_kst 5.132000e-03   p_cons 2.392000e-03   p_joint 2.320000e-04

Joint ci ratio: 2.196878e-01	ci left: 1.088763e-03	ci right 1.361013e-03	k: 317	n:260000
Cons ci ratio: 1.569893e-01	ci left: 2.204475e-03	ci right 2.583676e-03	k: 621	n:260000
KS ci ratio: 1.066498e-01	ci left: 4.893447e-03	ci right 5.448441e-03	k: 1343	n:260000
TMPRSS13   260000 perm   84 sec   (3102 perm/sec)   p_kst 5.165385e-03   p_cons 2.388462e-03   p_joint 1.219231e-03

Joint ci ratio: 2.169772e-01	ci left: 1.076447e-03	ci right 1.341854e-03	k: 325	n:270000
Cons ci ratio: 1.544052e-01	ci left: 2.197575e-03	ci right 2.568791e-03	k: 642	n:270000
KS ci ratio: 1.049473e-01	ci left: 4.870856e-03	ci right 5.413924e-03	k: 1387	n:270000
TMPRSS13   270000 perm   88 sec   (3060 perm/sec)   p_kst 5.137037e-03   p_cons 2.377778e-03   p_joint 1.203704e-03

Joint ci ratio: 2.196974e-01	ci left: 1.010990e-03	ci right 1.263804e-03	k: 317	n:280000
Cons ci ratio: 1.511482e-01	ci left: 2.215269e-03	ci right 2.580866e-03	k: 670	n:280000
KS ci ratio: 1.022176e-01	ci left: 4.957826e-03	ci right 5.495350e-03	k: 1462	n:280000
TMPRSS13   280000 perm   93 sec   (3017 perm/sec)   p_kst 5.221429e-03   p_cons 2.392857e-03   p_joint 1.132143e-03

Joint ci ratio: 2.173202e-01	ci left: 9.989441e-04	ci right 1.245683e-03	k: 324	n:290000
Cons ci ratio: 1.484086e-01	ci left: 2.221857e-03	ci right 2.581306e-03	k: 695	n:290000
KS ci ratio: 1.002487e-01	ci left: 4.981806e-03	ci right 5.510914e-03	k: 1520	n:290000
TMPRSS13   290000 perm   97 sec   (2978 perm/sec)   p_kst 5.241379e-03   p_cons 2.396552e-03   p_joint 1.117241e-03

Joint ci ratio: 2.115387e-01	ci left: 1.022426e-03	ci right 1.267375e-03	k: 342	n:300000
Cons ci ratio: 1.456103e-01	ci left: 2.234486e-03	ci right 2.588569e-03	k: 722	n:300000
KS ci ratio: 9.883083e-02	ci left: 4.958758e-03	ci right 5.477537e-03	k: 1564	n:300000
TMPRSS13   300000 perm   102 sec   (2938 perm/sec)   p_kst 5.213333e-03   p_cons 2.406667e-03   p_joint 1.140000e-03

Joint ci ratio: 2.153473e-01	ci left: 9.527998e-04	ci right 1.185721e-03	k: 330	n:310000
Cons ci ratio: 1.429647e-01	ci left: 2.246359e-03	ci right 2.595304e-03	k: 749	n:310000
KS ci ratio: 9.677855e-02	ci left: 5.009647e-03	ci right 5.522249e-03	k: 1631	n:310000
TMPRSS13   310000 perm   107 sec   (2896 perm/sec)   p_kst 5.261290e-03   p_cons 2.416129e-03   p_joint 1.064516e-03

Joint ci ratio: 2.137409e-01	ci left: 9.378094e-04	ci right 1.165132e-03	k: 335	n:320000
Cons ci ratio: 1.408220e-01	ci left: 2.245484e-03	ci right 2.588626e-03	k: 772	n:320000
KS ci ratio: 9.493329e-02	ci left: 5.048306e-03	ci right 5.554467e-03	k: 1695	n:320000
TMPRSS13   320000 perm   112 sec   (2861 perm/sec)   p_kst 5.296875e-03   p_cons 2.412500e-03   p_joint 1.046875e-03

Joint ci ratio: 2.312893e-01	ci left: 7.691608e-04	ci right 9.731017e-04	k: 286	n:330000
Cons ci ratio: 1.376506e-01	ci left: 2.282733e-03	ci right 2.623068e-03	k: 808	n:330000
KS ci ratio: 9.386226e-02	ci left: 5.010714e-03	ci right 5.507126e-03	k: 1734	n:330000
TMPRSS13   330000 perm   117 sec   (2824 perm/sec)   p_kst 5.254545e-03   p_cons 2.448485e-03   p_joint 8.666667e-04

Joint ci ratio: 2.289098e-01	ci left: 7.631680e-04	ci right 9.631440e-04	k: 292	n:340000
Cons ci ratio: 1.355717e-01	ci left: 2.286610e-03	ci right 2.621960e-03	k: 833	n:340000
KS ci ratio: 9.261695e-02	ci left: 4.998350e-03	ci right 5.486611e-03	k: 1781	n:340000
TMPRSS13   340000 perm   122 sec   (2791 perm/sec)   p_kst 5.238235e-03   p_cons 2.450000e-03   p_joint 8.588235e-04

Joint ci ratio: 2.444327e-01	ci left: 6.445934e-04	ci right 8.266943e-04	k: 256	n:350000
Cons ci ratio: 1.332736e-01	ci left: 2.301351e-03	ci right 2.632687e-03	k: 862	n:350000
KS ci ratio: 9.097102e-02	ci left: 5.036996e-03	ci right 5.519822e-03	k: 1846	n:350000
TMPRSS13   350000 perm   127 sec   (2757 perm/sec)   p_kst 5.274286e-03   p_cons 2.462857e-03   p_joint 7.314286e-04

Joint ci ratio: 2.434890e-01	ci left: 6.319034e-04	ci right 8.096258e-04	k: 258	n:360000
Cons ci ratio: 1.316817e-01	ci left: 2.293824e-03	ci right 2.619823e-03	k: 883	n:360000
KS ci ratio: 9.005126e-02	ci left: 5.000241e-03	ci right 5.474443e-03	k: 1884	n:360000
TMPRSS13   360000 perm   132 sec   (2724 perm/sec)   p_kst 5.233333e-03   p_cons 2.452778e-03   p_joint 7.166667e-04

Joint ci ratio: 2.416313e-01	ci left: 6.249784e-04	ci right 7.992111e-04	k: 262	n:370000
Cons ci ratio: 1.302900e-01	ci left: 2.281496e-03	ci right 2.602051e-03	k: 902	n:370000
KS ci ratio: 8.881130e-02	ci left: 5.005139e-03	ci right 5.472931e-03	k: 1937	n:370000
TMPRSS13   370000 perm   137 sec   (2694 perm/sec)   p_kst 5.235135e-03   p_cons 2.437838e-03   p_joint 7.081081e-04

Joint ci ratio: 2.380378e-01	ci left: 6.283194e-04	ci right 8.004943e-04	k: 270	n:380000
Cons ci ratio: 1.284536e-01	ci left: 2.287664e-03	ci right 2.604210e-03	k: 928	n:380000
KS ci ratio: 8.777644e-02	ci left: 4.991803e-03	ci right 5.452633e-03	k: 1983	n:380000
TMPRSS13   380000 perm   143 sec   (2662 perm/sec)   p_kst 5.218421e-03   p_cons 2.442105e-03   p_joint 7.105263e-04

Joint ci ratio: 2.389239e-01	ci left: 6.073860e-04	ci right 7.745360e-04	k: 268	n:390000
Cons ci ratio: 1.275660e-01	ci left: 2.261270e-03	ci right 2.571838e-03	k: 941	n:390000
KS ci ratio: 8.669111e-02	ci left: 4.989216e-03	ci right 5.443824e-03	k: 2033	n:390000
TMPRSS13   390000 perm   148 sec   (2631 perm/sec)   p_kst 5.212821e-03   p_cons 2.412821e-03   p_joint 6.871795e-04

Joint ci ratio: 2.430288e-01	ci left: 5.710585e-04	ci right 7.313186e-04	k: 259	n:400000
Cons ci ratio: 1.262995e-01	ci left: 2.250729e-03	ci right 2.556551e-03	k: 960	n:400000
KS ci ratio: 8.574854e-02	ci left: 4.974559e-03	ci right 5.422655e-03	k: 2078	n:400000
TMPRSS13   400000 perm   154 sec   (2601 perm/sec)   p_kst 5.195000e-03   p_cons 2.400000e-03   p_joint 6.475000e-04

Joint ci ratio: 2.578441e-01	ci left: 4.908309e-04	ci right 6.383276e-04	k: 230	n:410000
Cons ci ratio: 1.250699e-01	ci left: 2.240717e-03	ci right 2.541994e-03	k: 979	n:410000
KS ci ratio: 8.457627e-02	ci left: 4.991680e-03	ci right 5.434869e-03	k: 2136	n:410000
TMPRSS13   410000 perm   159 sec   (2571 perm/sec)   p_kst 5.209756e-03   p_cons 2.387805e-03   p_joint 5.609756e-04

Joint ci ratio: 2.550983e-01	ci left: 4.902840e-04	ci right 6.357977e-04	k: 235	n:420000
Cons ci ratio: 1.236896e-01	ci left: 2.238117e-03	ci right 2.535481e-03	k: 1001	n:420000
KS ci ratio: 8.364254e-02	ci left: 4.984712e-03	ci right 5.422157e-03	k: 2184	n:420000
TMPRSS13   420000 perm   165 sec   (2543 perm/sec)   p_kst 5.200000e-03   p_cons 2.383333e-03   p_joint 5.595238e-04

Joint ci ratio: 2.589716e-01	ci left: 4.636508e-04	ci right 6.036874e-04	k: 228	n:430000
Cons ci ratio: 1.220556e-01	ci left: 2.246929e-03	ci right 2.541235e-03	k: 1028	n:430000
KS ci ratio: 8.285103e-02	ci left: 4.964427e-03	ci right 5.395770e-03	k: 2226	n:430000
TMPRSS13   430000 perm   171 sec   (2517 perm/sec)   p_kst 5.176744e-03   p_cons 2.390698e-03   p_joint 5.302326e-04

Joint ci ratio: 2.642200e-01	ci left: 4.339989e-04	ci right 5.681759e-04	k: 219	n:440000
Cons ci ratio: 1.209448e-01	ci left: 2.237732e-03	ci right 2.527974e-03	k: 1047	n:440000
KS ci ratio: 8.200894e-02	ci left: 4.953988e-03	ci right 5.379840e-03	k: 2272	n:440000
TMPRSS13   440000 perm   177 sec   (2488 perm/sec)   p_kst 5.163636e-03   p_cons 2.379545e-03   p_joint 4.977273e-04

Joint ci ratio: 2.606887e-01	ci left: 4.368108e-04	ci right 5.697582e-04	k: 225	n:450000
Cons ci ratio: 1.196392e-01	ci left: 2.237577e-03	ci right 2.524445e-03	k: 1070	n:450000
KS ci ratio: 8.108663e-02	ci left: 4.957099e-03	ci right 5.378200e-03	k: 2324	n:450000
TMPRSS13   450000 perm   183 sec   (2461 perm/sec)   p_kst 5.164444e-03   p_cons 2.377778e-03   p_joint 5.000000e-04

Joint ci ratio: 2.454116e-01	ci left: 4.863654e-04	ci right 6.243997e-04	k: 254	n:460000
Cons ci ratio: 1.181047e-01	ci left: 2.247995e-03	ci right 2.532244e-03	k: 1098	n:460000
KS ci ratio: 8.205449e-02	ci left: 4.734317e-03	ci right 5.141522e-03	k: 2270	n:460000
TMPRSS13   460000 perm   189 sec   (2435 perm/sec)   p_kst 4.934783e-03   p_cons 2.386957e-03   p_joint 5.521739e-04

Joint ci ratio: 2.556484e-01	ci left: 4.361330e-04	ci right 5.658985e-04	k: 234	n:470000
Cons ci ratio: 1.167838e-01	ci left: 2.251794e-03	ci right 2.533120e-03	k: 1123	n:470000
KS ci ratio: 8.128908e-02	ci left: 4.723207e-03	ci right 5.125487e-03	k: 2313	n:470000
TMPRSS13   470000 perm   195 sec   (2410 perm/sec)   p_kst 4.921277e-03   p_cons 2.389362e-03   p_joint 4.978723e-04

Joint ci ratio: 2.567451e-01	ci left: 4.231474e-04	ci right 5.496758e-04	k: 232	n:480000
Cons ci ratio: 1.153553e-01	ci left: 2.261522e-03	ci right 2.540372e-03	k: 1151	n:480000
KS ci ratio: 8.022041e-02	ci left: 4.751367e-03	ci right 5.150477e-03	k: 2375	n:480000
TMPRSS13   480000 perm   201 sec   (2386 perm/sec)   p_kst 4.947917e-03   p_cons 2.397917e-03   p_joint 4.833333e-04

Joint ci ratio: 2.572994e-01	ci left: 4.126021e-04	ci right 5.362864e-04	k: 231	n:490000
Cons ci ratio: 1.140750e-01	ci left: 2.266908e-03	ci right 2.543110e-03	k: 1177	n:490000
KS ci ratio: 7.934010e-02	ci left: 4.760407e-03	ci right 5.155685e-03	k: 2428	n:490000
TMPRSS13   490000 perm   207 sec   (2362 perm/sec)   p_kst 4.955102e-03   p_cons 2.402041e-03   p_joint 4.714286e-04

Joint ci ratio: 2.785268e-01	ci left: 3.409080e-04	ci right 4.530141e-04	k: 197	n:500000
Cons ci ratio: 1.129304e-01	ci left: 2.268207e-03	ci right 2.541610e-03	k: 1201	n:500000
KS ci ratio: 7.688567e-02	ci left: 4.973087e-03	ci right 5.372680e-03	k: 2585	n:500000
TMPRSS13   500000 perm   214 sec   (2338 perm/sec)   p_kst 5.170000e-03   p_cons 2.402000e-03   p_joint 3.940000e-04

Joint ci ratio: 2.730639e-01	ci left: 3.488254e-04	ci right 4.608994e-04	k: 205	n:510000
Cons ci ratio: 1.117282e-01	ci left: 2.273281e-03	ci right 2.544186e-03	k: 1227	n:510000
KS ci ratio: 7.610959e-02	ci left: 4.977510e-03	ci right 5.373242e-03	k: 2638	n:510000
TMPRSS13   510000 perm   220 sec   (2315 perm/sec)   p_kst 5.172549e-03   p_cons 2.405882e-03   p_joint 4.019608e-04

Joint ci ratio: 2.717485e-01	ci left: 3.457006e-04	ci right 4.561443e-04	k: 207	n:520000
Cons ci ratio: 1.104754e-01	ci left: 2.281914e-03	ci right 2.550601e-03	k: 1255	n:520000
KS ci ratio: 7.541290e-02	ci left: 4.974233e-03	ci right 5.365926e-03	k: 2687	n:520000
TMPRSS13   520000 perm   227 sec   (2291 perm/sec)   p_kst 5.167308e-03   p_cons 2.413462e-03   p_joint 3.980769e-04

Joint ci ratio: 2.685397e-01	ci left: 3.479731e-04	ci right 4.576091e-04	k: 212	n:530000
Cons ci ratio: 1.095636e-01	ci left: 2.277391e-03	ci right 2.543189e-03	k: 1276	n:530000
KS ci ratio: 7.472127e-02	ci left: 4.972948e-03	ci right 5.360793e-03	k: 2737	n:530000
TMPRSS13   530000 perm   234 sec   (2267 perm/sec)   p_kst 5.164151e-03   p_cons 2.407547e-03   p_joint 4.000000e-04

Joint ci ratio: 2.679123e-01	ci left: 3.432564e-04	ci right 4.511111e-04	k: 213	n:540000
Cons ci ratio: 1.084231e-01	ci left: 2.283855e-03	ci right 2.547455e-03	k: 1303	n:540000
KS ci ratio: 7.404833e-02	ci left: 4.971727e-03	ci right 5.355834e-03	k: 2787	n:540000
TMPRSS13   540000 perm   240 sec   (2246 perm/sec)   p_kst 5.161111e-03   p_cons 2.412963e-03   p_joint 3.944444e-04

Joint ci ratio: 2.648361e-01	ci left: 3.454993e-04	ci right 4.526055e-04	k: 218	n:550000
Cons ci ratio: 1.073984e-01	ci left: 2.286558e-03	ci right 2.547819e-03	k: 1328	n:550000
KS ci ratio: 7.330243e-02	ci left: 4.983060e-03	ci right 5.363999e-03	k: 2844	n:550000
TMPRSS13   550000 perm   247 sec   (2225 perm/sec)   p_kst 5.170909e-03   p_cons 2.414545e-03   p_joint 3.963636e-04

Joint ci ratio: 2.654440e-01	ci left: 3.376625e-04	ci right 4.426195e-04	k: 217	n:560000
Cons ci ratio: 1.066393e-01	ci left: 2.278746e-03	ci right 2.537159e-03	k: 1347	n:560000
KS ci ratio: 7.271729e-02	ci left: 4.974719e-03	ci right 5.351857e-03	k: 2890	n:560000
TMPRSS13   560000 perm   254 sec   (2204 perm/sec)   p_kst 5.160714e-03   p_cons 2.405357e-03   p_joint 3.875000e-04

Joint ci ratio: 2.636364e-01	ci left: 3.366527e-04	ci right 4.404656e-04	k: 220	n:570000
Cons ci ratio: 1.057025e-01	ci left: 2.279756e-03	ci right 2.535870e-03	k: 1371	n:570000
KS ci ratio: 7.225732e-02	ci left: 4.951177e-03	ci right 5.324056e-03	k: 2927	n:570000
TMPRSS13   570000 perm   261 sec   (2184 perm/sec)   p_kst 5.135088e-03   p_cons 2.405263e-03   p_joint 3.859649e-04

Joint ci ratio: 2.607035e-01	ci left: 3.389026e-04	ci right 4.420572e-04	k: 225	n:580000
Cons ci ratio: 1.047148e-01	ci left: 2.284098e-03	ci right 2.538155e-03	k: 1397	n:580000
KS ci ratio: 7.157580e-02	ci left: 4.960628e-03	ci right 5.330548e-03	k: 2983	n:580000
TMPRSS13   580000 perm   268 sec   (2162 perm/sec)   p_kst 5.143103e-03   p_cons 2.408621e-03   p_joint 3.879310e-04

Joint ci ratio: 2.578664e-01	ci left: 3.410824e-04	ci right 4.435888e-04	k: 230	n:590000
Cons ci ratio: 1.036085e-01	ci left: 2.294908e-03	ci right 2.547306e-03	k: 1427	n:590000
KS ci ratio: 7.093667e-02	ci left: 4.966445e-03	ci right 5.333356e-03	k: 3037	n:590000
TMPRSS13   590000 perm   276 sec   (2141 perm/sec)   p_kst 5.147458e-03   p_cons 2.418644e-03   p_joint 3.898305e-04

Joint ci ratio: 2.636389e-01	ci left: 3.198197e-04	ci right 4.184429e-04	k: 220	n:600000
Cons ci ratio: 1.028553e-01	ci left: 2.290755e-03	ci right 2.540755e-03	k: 1448	n:600000
KS ci ratio: 7.038304e-02	ci left: 4.962257e-03	ci right 5.325880e-03	k: 3085	n:600000
TMPRSS13   600000 perm   283 sec   (2123 perm/sec)   p_kst 5.141667e-03   p_cons 2.413333e-03   p_joint 3.666667e-04

Joint ci ratio: 2.624544e-01	ci left: 3.176392e-04	ci right 4.150777e-04	k: 222	n:610000
Cons ci ratio: 1.022228e-01	ci left: 2.281953e-03	ci right 2.529368e-03	k: 1466	n:610000
KS ci ratio: 6.990946e-02	ci left: 4.948552e-03	ci right 5.308632e-03	k: 3127	n:610000
TMPRSS13   610000 perm   290 sec   (2104 perm/sec)   p_kst 5.126230e-03   p_cons 2.403279e-03   p_joint 3.639344e-04

Joint ci ratio: 2.618685e-01	ci left: 3.140228e-04	ci right 4.101016e-04	k: 223	n:620000
Cons ci ratio: 1.016019e-01	ci left: 2.273439e-03	ci right 2.518345e-03	k: 1484	n:620000
KS ci ratio: 6.954462e-02	ci left: 4.921032e-03	ci right 5.277165e-03	k: 3160	n:620000
TMPRSS13   620000 perm   297 sec   (2086 perm/sec)   p_kst 5.096774e-03   p_cons 2.393548e-03   p_joint 3.596774e-04

Joint ci ratio: 2.636413e-01	ci left: 3.045898e-04	ci right 3.985175e-04	k: 220	n:630000
Cons ci ratio: 1.008913e-01	ci left: 2.269842e-03	ci right 2.512548e-03	k: 1505	n:630000
KS ci ratio: 6.893639e-02	ci left: 4.930271e-03	ci right 5.283827e-03	k: 3216	n:630000
TMPRSS13   630000 perm   305 sec   (2067 perm/sec)   p_kst 5.104762e-03   p_cons 2.388889e-03   p_joint 3.492063e-04

Joint ci ratio: 2.607083e-01	ci left: 3.071298e-04	ci right 4.006154e-04	k: 225	n:640000
Cons ci ratio: 1.003271e-01	ci left: 2.260269e-03	ci right 2.500521e-03	k: 1522	n:640000
KS ci ratio: 6.835434e-02	ci left: 4.937698e-03	ci right 5.288679e-03	k: 3271	n:640000
TMPRSS13   640000 perm   312 sec   (2049 perm/sec)   p_kst 5.110938e-03   p_cons 2.378125e-03   p_joint 3.515625e-04

Joint ci ratio: 2.607090e-01	ci left: 3.024046e-04	ci right 3.944522e-04	k: 225	n:650000
Cons ci ratio: 9.954585e-02	ci left: 2.261496e-03	ci right 2.499897e-03	k: 1546	n:650000
KS ci ratio: 6.792029e-02	ci left: 4.925247e-03	ci right 5.273032e-03	k: 3313	n:650000
TMPRSS13   650000 perm   320 sec   (2031 perm/sec)   p_kst 5.096923e-03   p_cons 2.378462e-03   p_joint 3.461538e-04

Joint ci ratio: 2.595633e-01	ci left: 3.006554e-04	ci right 3.917032e-04	k: 227	n:660000
Cons ci ratio: 9.871956e-02	ci left: 2.265648e-03	ci right 2.502390e-03	k: 1572	n:660000
KS ci ratio: 6.738350e-02	ci left: 4.929567e-03	ci right 5.274799e-03	k: 3366	n:660000
TMPRSS13   660000 perm   328 sec   (2014 perm/sec)   p_kst 5.100000e-03   p_cons 2.381818e-03   p_joint 3.439394e-04

Joint ci ratio: 2.589964e-01	ci left: 2.975635e-04	ci right 3.874463e-04	k: 228	n:670000
Cons ci ratio: 9.803651e-02	ci left: 2.263860e-03	ci right 2.498684e-03	k: 1594	n:670000
KS ci ratio: 6.687890e-02	ci left: 4.930833e-03	ci right 5.273467e-03	k: 3417	n:670000
TMPRSS13   670000 perm   335 sec   (1997 perm/sec)   p_kst 5.100000e-03   p_cons 2.379104e-03   p_joint 3.402985e-04

Joint ci ratio: 2.354818e-01	ci left: 3.594138e-04	ci right 4.566897e-04	k: 276	n:680000
Cons ci ratio: 9.736744e-02	ci left: 2.262131e-03	ci right 2.495082e-03	k: 1616	n:680000
KS ci ratio: 6.714850e-02	ci left: 4.819271e-03	ci right 5.155556e-03	k: 3390	n:680000
TMPRSS13   680000 perm   344 sec   (1979 perm/sec)   p_kst 4.985294e-03   p_cons 2.376471e-03   p_joint 4.058824e-04

Joint ci ratio: 2.425958e-01	ci left: 3.324044e-04	ci right 4.254975e-04	k: 260	n:690000
Cons ci ratio: 9.665279e-02	ci left: 2.263285e-03	ci right 2.494548e-03	k: 1640	n:690000
KS ci ratio: 6.667833e-02	ci left: 4.817828e-03	ci right 5.151567e-03	k: 3438	n:690000
TMPRSS13   690000 perm   352 sec   (1963 perm/sec)   p_kst 4.982609e-03   p_cons 2.376812e-03   p_joint 3.768116e-04

Joint ci ratio: 2.416720e-01	ci left: 3.303395e-04	ci right 4.224492e-04	k: 262	n:700000
Cons ci ratio: 9.592478e-02	ci left: 2.265807e-03	ci right 2.495485e-03	k: 1665	n:700000
KS ci ratio: 6.599950e-02	ci left: 4.848750e-03	ci right 5.181081e-03	k: 3509	n:700000
TMPRSS13   700000 perm   360 sec   (1946 perm/sec)   p_kst 5.012857e-03   p_cons 2.378571e-03   p_joint 3.742857e-04

Joint ci ratio: 2.660661e-01	ci left: 2.650093e-04	ci right 3.476083e-04	k: 216	n:710000
Cons ci ratio: 9.515659e-02	ci left: 2.271014e-03	ci right 2.499274e-03	k: 1692	n:710000
KS ci ratio: 6.552514e-02	ci left: 4.851108e-03	ci right 5.181120e-03	k: 3560	n:710000
TMPRSS13   710000 perm   368 sec   (1930 perm/sec)   p_kst 5.014085e-03   p_cons 2.383099e-03   p_joint 3.042254e-04

Joint ci ratio: 2.642458e-01	ci left: 2.652184e-04	ci right 3.472234e-04	k: 219	n:720000
Cons ci ratio: 9.440656e-02	ci left: 2.276083e-03	ci right 2.502950e-03	k: 1719	n:720000
KS ci ratio: 6.507897e-02	ci left: 4.850676e-03	ci right 5.178326e-03	k: 3609	n:720000
TMPRSS13   720000 perm   376 sec   (1913 perm/sec)   p_kst 5.012500e-03   p_cons 2.387500e-03   p_joint 3.041667e-04

Joint ci ratio: 2.630530e-01	ci left: 2.641439e-04	ci right 3.453873e-04	k: 221	n:730000
Cons ci ratio: 9.375472e-02	ci left: 2.277007e-03	ci right 2.502313e-03	k: 1743	n:730000
KS ci ratio: 6.464180e-02	ci left: 4.850263e-03	ci right 5.175602e-03	k: 3658	n:730000
TMPRSS13   730000 perm   385 sec   (1897 perm/sec)   p_kst 5.010959e-03   p_cons 2.387671e-03   p_joint 3.027397e-04

Joint ci ratio: 2.642469e-01	ci left: 2.580502e-04	ci right 3.378392e-04	k: 219	n:740000
Cons ci ratio: 9.322196e-02	ci left: 2.272632e-03	ci right 2.496157e-03	k: 1763	n:740000
KS ci ratio: 6.418722e-02	ci left: 4.853857e-03	ci right 5.177063e-03	k: 3710	n:740000
TMPRSS13   740000 perm   393 sec   (1881 perm/sec)   p_kst 5.013514e-03   p_cons 2.382432e-03   p_joint 2.959459e-04

Joint ci ratio: 2.642474e-01	ci left: 2.546094e-04	ci right 3.333347e-04	k: 219	n:750000
Cons ci ratio: 9.251642e-02	ci left: 2.277494e-03	ci right 2.499711e-03	k: 1790	n:750000
KS ci ratio: 6.370809e-02	ci left: 4.862613e-03	ci right 5.183896e-03	k: 3766	n:750000
TMPRSS13   750000 perm   402 sec   (1865 perm/sec)   p_kst 5.021333e-03   p_cons 2.386667e-03   p_joint 2.920000e-04

Joint ci ratio: 2.636492e-01	ci left: 2.524880e-04	ci right 3.303515e-04	k: 220	n:760000
Cons ci ratio: 9.197893e-02	ci left: 2.274521e-03	ci right 2.495089e-03	k: 1811	n:760000
KS ci ratio: 6.324784e-02	ci left: 4.869851e-03	ci right 5.189203e-03	k: 3821	n:760000
TMPRSS13   760000 perm   411 sec   (1849 perm/sec)   p_kst 5.027632e-03   p_cons 2.382895e-03   p_joint 2.894737e-04

Joint ci ratio: 2.648512e-01	ci left: 2.467835e-04	ci right 3.232923e-04	k: 218	n:770000
Cons ci ratio: 9.150075e-02	ci left: 2.269091e-03	ci right 2.487927e-03	k: 1830	n:770000
KS ci ratio: 6.278928e-02	ci left: 4.878188e-03	ci right 5.195683e-03	k: 3877	n:770000
TMPRSS13   770000 perm   420 sec   (1834 perm/sec)   p_kst 5.035065e-03   p_cons 2.376623e-03   p_joint 2.831169e-04

Joint ci ratio: 2.618782e-01	ci left: 2.496067e-04	ci right 3.259799e-04	k: 223	n:780000
Cons ci ratio: 9.093146e-02	ci left: 2.268814e-03	ci right 2.486190e-03	k: 1853	n:780000
KS ci ratio: 6.242833e-02	ci left: 4.872436e-03	ci right 5.187667e-03	k: 3922	n:780000
TMPRSS13   780000 perm   429 sec   (1819 perm/sec)   p_kst 5.028205e-03   p_cons 2.375641e-03   p_joint 2.858974e-04

Joint ci ratio: 2.584394e-01	ci left: 2.535469e-04	ci right 3.299426e-04	k: 229	n:790000
Cons ci ratio: 9.042097e-02	ci left: 2.266074e-03	ci right 2.481904e-03	k: 1874	n:790000
KS ci ratio: 6.199508e-02	ci left: 4.879297e-03	ci right 5.192703e-03	k: 3977	n:790000
TMPRSS13   790000 perm   438 sec   (1805 perm/sec)   p_kst 5.034177e-03   p_cons 2.372152e-03   p_joint 2.898734e-04

Joint ci ratio: 2.573231e-01	ci left: 2.527160e-04	ci right 3.284795e-04	k: 231	n:800000
Cons ci ratio: 8.989522e-02	ci left: 2.264628e-03	ci right 2.479000e-03	k: 1896	n:800000
KS ci ratio: 6.166299e-02	ci left: 4.871225e-03	ci right 5.182376e-03	k: 4020	n:800000
TMPRSS13   800000 perm   447 sec   (1791 perm/sec)   p_kst 5.025000e-03   p_cons 2.370000e-03   p_joint 2.887500e-04

Joint ci ratio: 2.551329e-01	ci left: 2.542172e-04	ci right 3.296789e-04	k: 235	n:810000
Cons ci ratio: 9.519882e-02	ci left: 1.989423e-03	ci right 2.189473e-03	k: 1691	n:810000
KS ci ratio: 6.129072e-02	ci left: 4.870650e-03	ci right 5.179820e-03	k: 4069	n:810000
TMPRSS13   810000 perm   456 sec   (1777 perm/sec)   p_kst 5.023457e-03   p_cons 2.087654e-03   p_joint 2.901235e-04

Joint ci ratio: 2.535266e-01	ci left: 2.545424e-04	ci right 3.295497e-04	k: 238	n:820000
Cons ci ratio: 9.447541e-02	ci left: 1.996117e-03	ci right 2.195231e-03	k: 1717	n:820000
KS ci ratio: 6.086574e-02	ci left: 4.879703e-03	ci right 5.187224e-03	k: 4126	n:820000
TMPRSS13   820000 perm   465 sec   (1764 perm/sec)   p_kst 5.031707e-03   p_cons 2.093902e-03   p_joint 2.902439e-04

Joint ci ratio: 2.524726e-01	ci left: 2.537324e-04	ci right 3.281413e-04	k: 240	n:830000
Cons ci ratio: 9.368754e-02	ci left: 2.006186e-03	ci right 2.204544e-03	k: 1746	n:830000
KS ci ratio: 6.048582e-02	ci left: 4.882612e-03	ci right 5.188328e-03	k: 4178	n:830000
TMPRSS13   830000 perm   474 sec   (1751 perm/sec)   p_kst 5.033735e-03   p_cons 2.103614e-03   p_joint 2.891566e-04

Joint ci ratio: 2.524730e-01	ci left: 2.507118e-04	ci right 3.242350e-04	k: 240	n:840000
Cons ci ratio: 9.312947e-02	ci left: 2.006718e-03	ci right 2.203883e-03	k: 1767	n:840000
KS ci ratio: 6.017728e-02	ci left: 4.874903e-03	ci right 5.178526e-03	k: 4221	n:840000
TMPRSS13   840000 perm   483 sec   (1738 perm/sec)   p_kst 5.025000e-03   p_cons 2.103571e-03   p_joint 2.857143e-04

Joint ci ratio: 2.493872e-01	ci left: 2.543772e-04	ci right 3.279222e-04	k: 246	n:850000
Cons ci ratio: 9.227167e-02	ci left: 2.021034e-03	ci right 2.217678e-03	k: 1800	n:850000
KS ci ratio: 5.984521e-02	ci left: 4.872015e-03	ci right 5.173726e-03	k: 4268	n:850000
TMPRSS13   850000 perm   493 sec   (1725 perm/sec)   p_kst 5.021176e-03   p_cons 2.117647e-03   p_joint 2.894118e-04

Joint ci ratio: 2.524739e-01	ci left: 2.448812e-04	ci right 3.166948e-04	k: 240	n:860000
Cons ci ratio: 9.173839e-02	ci left: 2.021391e-03	ci right 2.216871e-03	k: 1821	n:860000
KS ci ratio: 5.947705e-02	ci left: 4.876073e-03	ci right 5.176113e-03	k: 4321	n:860000
TMPRSS13   860000 perm   502 sec   (1713 perm/sec)   p_kst 5.024419e-03   p_cons 2.117442e-03   p_joint 2.790698e-04

Joint ci ratio: 2.595742e-01	ci left: 2.280823e-04	ci right 2.971559e-04	k: 227	n:870000
Cons ci ratio: 9.111521e-02	ci left: 2.026235e-03	ci right 2.220782e-03	k: 1846	n:870000
KS ci ratio: 5.906812e-02	ci left: 4.887970e-03	ci right 5.186604e-03	k: 4381	n:870000
TMPRSS13   870000 perm   512 sec   (1700 perm/sec)   p_kst 5.035632e-03   p_cons 2.121839e-03   p_joint 2.609195e-04

Joint ci ratio: 2.624692e-01	ci left: 2.201802e-04	ci right 2.877265e-04	k: 222	n:880000
Cons ci ratio: 9.048035e-02	ci left: 2.032084e-03	ci right 2.225762e-03	k: 1872	n:880000
KS ci ratio: 5.874732e-02	ci left: 4.886167e-03	ci right 5.183015e-03	k: 4429	n:880000
TMPRSS13   880000 perm   522 sec   (1687 perm/sec)   p_kst 5.032955e-03   p_cons 2.127273e-03   p_joint 2.522727e-04

Joint ci ratio: 2.618829e-01	ci left: 2.187560e-04	ci right 2.856910e-04	k: 223	n:890000
Cons ci ratio: 8.990603e-02	ci left: 2.035610e-03	ci right 2.228327e-03	k: 1896	n:890000
KS ci ratio: 5.844481e-02	ci left: 4.882194e-03	ci right 5.177221e-03	k: 4475	n:890000
TMPRSS13   890000 perm   531 sec   (1675 perm/sec)   p_kst 5.028090e-03   p_cons 2.130337e-03   p_joint 2.505618e-04

Joint ci ratio: 2.590078e-01	ci left: 2.215183e-04	ci right 2.884340e-04	k: 228	n:900000
Cons ci ratio: 8.938916e-02	ci left: 2.036889e-03	ci right 2.228560e-03	k: 1918	n:900000
KS ci ratio: 5.819221e-02	ci left: 4.870648e-03	ci right 5.163663e-03	k: 4514	n:900000
TMPRSS13   900000 perm   541 sec   (1662 perm/sec)   p_kst 5.015556e-03   p_cons 2.131111e-03   p_joint 2.533333e-04

Joint ci ratio: 2.750992e-01	ci left: 1.924232e-04	ci right 2.547870e-04	k: 202	n:910000
Cons ci ratio: 8.885816e-02	ci left: 2.039217e-03	ci right 2.229908e-03	k: 1941	n:910000
KS ci ratio: 5.787265e-02	ci left: 4.871272e-03	ci right 5.162661e-03	k: 4564	n:910000
TMPRSS13   910000 perm   552 sec   (1650 perm/sec)   p_kst 5.015385e-03   p_cons 2.132967e-03   p_joint 2.219780e-04

Joint ci ratio: 2.843572e-01	ci left: 1.771918e-04	ci right 2.368991e-04	k: 189	n:920000
Cons ci ratio: 8.826902e-02	ci left: 2.044687e-03	ci right 2.234557e-03	k: 1967	n:920000
KS ci ratio: 5.753325e-02	ci left: 4.876173e-03	ci right 5.166088e-03	k: 4618	n:920000
TMPRSS13   920000 perm   562 sec   (1638 perm/sec)   p_kst 5.019565e-03   p_cons 2.138043e-03   p_joint 2.054348e-04

Joint ci ratio: 2.828723e-01	ci left: 1.772841e-04	ci right 2.366549e-04	k: 191	n:930000
Cons ci ratio: 8.775762e-02	ci left: 2.046888e-03	ci right 2.235804e-03	k: 1990	n:930000
KS ci ratio: 5.723669e-02	ci left: 4.874613e-03	ci right 5.162892e-03	k: 4666	n:930000
TMPRSS13   930000 perm   572 sec   (1627 perm/sec)   p_kst 5.017204e-03   p_cons 2.139785e-03   p_joint 2.053763e-04

Joint ci ratio: 2.828726e-01	ci left: 1.753981e-04	ci right 2.341373e-04	k: 191	n:940000
Cons ci ratio: 8.732021e-02	ci left: 2.045923e-03	ci right 2.233762e-03	k: 2010	n:940000
KS ci ratio: 5.693253e-02	ci left: 4.875188e-03	ci right 5.161918e-03	k: 4716	n:940000
TMPRSS13   940000 perm   582 sec   (1615 perm/sec)   p_kst 5.017021e-03   p_cons 2.138298e-03   p_joint 2.031915e-04

Joint ci ratio: 2.821390e-01	ci left: 1.745298e-04	ci right 2.327997e-04	k: 192	n:950000
Cons ci ratio: 8.680365e-02	ci left: 2.049100e-03	ci right 2.236061e-03	k: 2034	n:950000
KS ci ratio: 5.663317e-02	ci left: 4.875754e-03	ci right 5.160961e-03	k: 4766	n:950000
TMPRSS13   950000 perm   593 sec   (1603 perm/sec)   p_kst 5.016842e-03   p_cons 2.141053e-03   p_joint 2.021053e-04

Joint ci ratio: 2.785534e-01	ci left: 1.775541e-04	ci right 2.359482e-04	k: 197	n:960000
Cons ci ratio: 8.617042e-02	ci left: 2.058330e-03	ci right 2.244694e-03	k: 2064	n:960000
KS ci ratio: 5.630326e-02	ci left: 4.882475e-03	ci right 5.166357e-03	k: 4822	n:960000
TMPRSS13   960000 perm   603 sec   (1592 perm/sec)   p_kst 5.022917e-03   p_cons 2.150000e-03   p_joint 2.052083e-04

Joint ci ratio: 2.771571e-01	ci left: 1.776418e-04	ci right 2.357209e-04	k: 199	n:970000
Cons ci ratio: 8.565334e-02	ci left: 2.062330e-03	ci right 2.247880e-03	k: 2089	n:970000
KS ci ratio: 5.599058e-02	ci left: 4.887029e-03	ci right 5.169547e-03	k: 4876	n:970000
TMPRSS13   970000 perm   613 sec   (1581 perm/sec)   p_kst 5.026804e-03   p_cons 2.153608e-03   p_joint 2.051546e-04

Joint ci ratio: 2.764670e-01	ci left: 1.767787e-04	ci right 2.344066e-04	k: 200	n:980000
Cons ci ratio: 8.522627e-02	ci left: 2.062256e-03	ci right 2.246828e-03	k: 2110	n:980000
KS ci ratio: 5.570576e-02	ci left: 4.887470e-03	ci right 5.168529e-03	k: 4926	n:980000
TMPRSS13   980000 perm   624 sec   (1570 perm/sec)   p_kst 5.026531e-03   p_cons 2.153061e-03   p_joint 2.040816e-04

Joint ci ratio: 2.730908e-01	ci left: 1.796957e-04	ci right 2.374364e-04	k: 205	n:990000
Cons ci ratio: 8.484541e-02	ci left: 2.060209e-03	ci right 2.243733e-03	k: 2129	n:990000
KS ci ratio: 5.541965e-02	ci left: 4.888901e-03	ci right 5.168553e-03	k: 4977	n:990000
TMPRSS13   990000 perm   635 sec   (1560 perm/sec)   p_kst 5.027273e-03   p_cons 2.150505e-03   p_joint 2.070707e-04

Joint ci ratio: 2.730911e-01	ci left: 1.778987e-04	ci right 2.350621e-04	k: 205	n:1000000
Cons ci ratio: 8.443025e-02	ci left: 2.060163e-03	ci right 2.242740e-03	k: 2150	n:1000000
KS ci ratio: 5.513790e-02	ci left: 4.890307e-03	ci right 5.168572e-03	k: 5028	n:1000000
TMPRSS13   1000000 perm   645 sec   (1549 perm/sec)   p_kst 5.028000e-03   p_cons 2.150000e-03   p_joint 2.050000e-04

Joint ci ratio: 2.730914e-01	ci left: 1.761373e-04	ci right 2.327348e-04	k: 205	n:1010000
Cons ci ratio: 8.409876e-02	ci left: 2.056242e-03	ci right 2.237721e-03	k: 2167	n:1010000
KS ci ratio: 5.487127e-02	ci left: 4.889736e-03	ci right 5.166580e-03	k: 5077	n:1010000
TMPRSS13   1010000 perm   657 sec   (1538 perm/sec)   p_kst 5.026733e-03   p_cons 2.145545e-03   p_joint 2.029703e-04

Joint ci ratio: 1.898849e-01	ci left: 3.779970e-04	ci right 4.582178e-04	k: 425	n:1020000
Cons ci ratio: 8.363700e-02	ci left: 2.059119e-03	ci right 2.239806e-03	k: 2191	n:1020000
KS ci ratio: 5.459776e-02	ci left: 4.891113e-03	ci right 5.166611e-03	k: 5128	n:1020000
TMPRSS13   1020000 perm   668 sec   (1528 perm/sec)   p_kst 5.027451e-03   p_cons 2.148039e-03   p_joint 4.166667e-04

Joint ci ratio: 1.892199e-01	ci left: 3.771015e-04	ci right 4.568198e-04	k: 428	n:1030000
Cons ci ratio: 8.316395e-02	ci left: 2.062893e-03	ci right 2.242838e-03	k: 2216	n:1030000
KS ci ratio: 5.430724e-02	ci left: 4.896298e-03	ci right 5.170575e-03	k: 5183	n:1030000
TMPRSS13   1030000 perm   679 sec   (1518 perm/sec)   p_kst 5.032039e-03   p_cons 2.151456e-03   p_joint 4.155340e-04

Joint ci ratio: 1.885618e-01	ci left: 3.762237e-04	ci right 4.554482e-04	k: 431	n:1040000
Cons ci ratio: 8.284710e-02	ci left: 2.059064e-03	ci right 2.237957e-03	k: 2233	n:1040000
KS ci ratio: 5.397989e-02	ci left: 4.908976e-03	ci right 5.182254e-03	k: 5246	n:1040000
TMPRSS13   1040000 perm   690 sec   (1508 perm/sec)   p_kst 5.044231e-03   p_cons 2.147115e-03   p_joint 4.144231e-04

Joint ci ratio: 1.896634e-01	ci left: 3.681040e-04	ci right 4.461237e-04	k: 426	n:1050000
Cons ci ratio: 8.231426e-02	ci left: 2.066503e-03	ci right 2.244832e-03	k: 2262	n:1050000
KS ci ratio: 5.379603e-02	ci left: 4.896047e-03	ci right 5.167647e-03	k: 5282	n:1050000
TMPRSS13   1050000 perm   701 sec   (1498 perm/sec)   p_kst 5.030476e-03   p_cons 2.154286e-03   p_joint 4.057143e-04

Joint ci ratio: 1.890008e-01	ci left: 3.673274e-04	ci right 4.448792e-04	k: 429	n:1060000
Cons ci ratio: 8.207917e-02	ci left: 2.059020e-03	ci right 2.236171e-03	k: 2275	n:1060000
KS ci ratio: 5.353317e-02	ci left: 4.898256e-03	ci right 5.168611e-03	k: 5334	n:1060000
TMPRSS13   1060000 perm   712 sec   (1488 perm/sec)   p_kst 5.032075e-03   p_cons 2.146226e-03   p_joint 4.047170e-04

Joint ci ratio: 1.870529e-01	ci left: 3.719098e-04	ci right 4.495280e-04	k: 438	n:1070000
Cons ci ratio: 8.170313e-02	ci left: 2.059001e-03	ci right 2.235301e-03	k: 2296	n:1070000
KS ci ratio: 5.323938e-02	ci left: 4.906883e-03	ci right 5.176181e-03	k: 5393	n:1070000
TMPRSS13   1070000 perm   724 sec   (1477 perm/sec)   p_kst 5.040187e-03   p_cons 2.145794e-03   p_joint 4.093458e-04

Joint ci ratio: 1.883453e-01	ci left: 3.631715e-04	ci right 4.395496e-04	k: 432	n:1080000
Cons ci ratio: 8.136740e-02	ci left: 2.057170e-03	ci right 2.232555e-03	k: 2315	n:1080000
KS ci ratio: 5.304332e-02	ci left: 4.897993e-03	ci right 5.165784e-03	k: 5433	n:1080000
TMPRSS13   1080000 perm   736 sec   (1468 perm/sec)   p_kst 5.030556e-03   p_cons 2.143519e-03   p_joint 4.000000e-04

Joint ci ratio: 1.982073e-01	ci left: 3.231701e-04	ci right 3.951248e-04	k: 390	n:1090000
Cons ci ratio: 8.094896e-02	ci left: 2.059868e-03	ci right 2.234537e-03	k: 2339	n:1090000
KS ci ratio: 5.279613e-02	ci left: 4.899227e-03	ci right 5.165799e-03	k: 5484	n:1090000
TMPRSS13   1090000 perm   748 sec   (1458 perm/sec)   p_kst 5.031193e-03   p_cons 2.145872e-03   p_joint 3.577982e-04

Joint ci ratio: 1.959643e-01	ci left: 3.280104e-04	ci right 4.001177e-04	k: 399	n:1100000
Cons ci ratio: 8.053691e-02	ci left: 2.062520e-03	ci right 2.236482e-03	k: 2363	n:1100000
KS ci ratio: 5.250472e-02	ci left: 4.909414e-03	ci right 5.175021e-03	k: 5545	n:1100000
TMPRSS13   1100000 perm   759 sec   (1449 perm/sec)   p_kst 5.040909e-03   p_cons 2.148182e-03   p_joint 3.627273e-04

Joint ci ratio: 1.947507e-01	ci left: 3.293396e-04	ci right 4.012375e-04	k: 404	n:1110000
Cons ci ratio: 8.019843e-02	ci left: 2.061594e-03	ci right 2.234714e-03	k: 2383	n:1110000
KS ci ratio: 5.223681e-02	ci left: 4.915864e-03	ci right 5.180422e-03	k: 5602	n:1110000
TMPRSS13   1110000 perm   771 sec   (1439 perm/sec)   p_kst 5.046847e-03   p_cons 2.146847e-03   p_joint 3.639640e-04

Joint ci ratio: 1.930889e-01	ci left: 3.323457e-04	ci right 4.042080e-04	k: 411	n:1120000
Cons ci ratio: 7.979768e-02	ci left: 2.064187e-03	ci right 2.236618e-03	k: 2407	n:1120000
KS ci ratio: 5.200992e-02	ci left: 4.915152e-03	ci right 5.178489e-03	k: 5651	n:1120000
TMPRSS13   1120000 perm   783 sec   (1430 perm/sec)   p_kst 5.045536e-03   p_cons 2.149107e-03   p_joint 3.669643e-04

Joint ci ratio: 1.928553e-01	ci left: 3.302467e-04	ci right 4.015587e-04	k: 412	n:1130000
Cons ci ratio: 7.958345e-02	ci left: 2.057195e-03	ci right 2.228559e-03	k: 2420	n:1130000
KS ci ratio: 5.176315e-02	ci left: 4.918823e-03	ci right 5.181069e-03	k: 5705	n:1130000
TMPRSS13   1130000 perm   795 sec   (1421 perm/sec)   p_kst 5.048673e-03   p_cons 2.141593e-03   p_joint 3.646018e-04

Joint ci ratio: 1.919280e-01	ci left: 3.306896e-04	ci right 4.017138e-04	k: 416	n:1140000
Cons ci ratio: 7.922428e-02	ci left: 2.058065e-03	ci right 2.228691e-03	k: 2442	n:1140000
KS ci ratio: 5.153335e-02	ci left: 4.919835e-03	ci right 5.180935e-03	k: 5756	n:1140000
TMPRSS13   1140000 perm   807 sec   (1412 perm/sec)   p_kst 5.049123e-03   p_cons 2.142105e-03   p_joint 3.649123e-04

Joint ci ratio: 2.065697e-01	ci left: 2.807174e-04	ci right 3.461903e-04	k: 359	n:1150000
Cons ci ratio: 7.890202e-02	ci left: 2.057216e-03	ci right 2.227046e-03	k: 2462	n:1150000
KS ci ratio: 5.136885e-02	ci left: 4.908813e-03	ci right 5.168472e-03	k: 5793	n:1150000
TMPRSS13   1150000 perm   819 sec   (1404 perm/sec)   p_kst 5.037391e-03   p_cons 2.140870e-03   p_joint 3.121739e-04

Joint ci ratio: 2.059984e-01	ci left: 2.799324e-04	ci right 3.450190e-04	k: 361	n:1160000
Cons ci ratio: 7.844132e-02	ci left: 2.063990e-03	ci right 2.233339e-03	k: 2491	n:1160000
KS ci ratio: 5.116624e-02	ci left: 4.905642e-03	ci right 5.164080e-03	k: 5839	n:1160000
TMPRSS13   1160000 perm   831 sec   (1395 perm/sec)   p_kst 5.033621e-03   p_cons 2.147414e-03   p_joint 3.112069e-04

Joint ci ratio: 2.057146e-01	ci left: 2.783505e-04	ci right 3.429688e-04	k: 362	n:1170000
Cons ci ratio: 7.808176e-02	ci left: 2.065622e-03	ci right 2.234294e-03	k: 2514	n:1170000
KS ci ratio: 5.096600e-02	ci left: 4.902528e-03	ci right 5.159761e-03	k: 5885	n:1170000
TMPRSS13   1170000 perm   844 sec   (1387 perm/sec)   p_kst 5.029915e-03   p_cons 2.148718e-03   p_joint 3.094017e-04

Joint ci ratio: 2.051504e-01	ci left: 2.775993e-04	ci right 3.418443e-04	k: 364	n:1180000
Cons ci ratio: 7.766580e-02	ci left: 2.070553e-03	ci right 2.238685e-03	k: 2541	n:1180000
KS ci ratio: 5.075091e-02	ci left: 4.902815e-03	ci right 5.158946e-03	k: 5935	n:1180000
TMPRSS13   1180000 perm   856 sec   (1379 perm/sec)   p_kst 5.029661e-03   p_cons 2.153390e-03   p_joint 3.084746e-04

Joint ci ratio: 2.062844e-01	ci left: 2.720782e-04	ci right 3.354375e-04	k: 360	n:1190000
Cons ci ratio: 7.734699e-02	ci left: 2.070458e-03	ci right 2.237862e-03	k: 2562	n:1190000
KS ci ratio: 5.048768e-02	ci left: 4.913057e-03	ci right 5.168353e-03	k: 5997	n:1190000
TMPRSS13   1190000 perm   868 sec   (1370 perm/sec)   p_kst 5.039496e-03   p_cons 2.152941e-03   p_joint 3.025210e-04

Joint ci ratio: 2.062847e-01	ci left: 2.698109e-04	ci right 3.326423e-04	k: 360	n:1200000
Cons ci ratio: 7.706196e-02	ci left: 2.068732e-03	ci right 2.235352e-03	k: 2581	n:1200000
KS ci ratio: 5.026185e-02	ci left: 4.916548e-03	ci right 5.170850e-03	k: 6051	n:1200000
TMPRSS13   1200000 perm   881 sec   (1362 perm/sec)   p_kst 5.042500e-03   p_cons 2.150833e-03   p_joint 3.000000e-04

Joint ci ratio: 2.059997e-01	ci left: 2.683648e-04	ci right 3.307622e-04	k: 361	n:1210000
Cons ci ratio: 7.679485e-02	ci left: 2.066225e-03	ci right 2.232040e-03	k: 2599	n:1210000
KS ci ratio: 5.001023e-02	ci left: 4.925697e-03	ci right 5.179160e-03	k: 6112	n:1210000
TMPRSS13   1210000 perm   893 sec   (1354 perm/sec)   p_kst 5.051240e-03   p_cons 2.147934e-03   p_joint 2.983471e-04

Joint ci ratio: 2.054331e-01	ci left: 2.677200e-04	ci right 3.297748e-04	k: 363	n:1220000
Cons ci ratio: 7.638445e-02	ci left: 2.071800e-03	ci right 2.237135e-03	k: 2627	n:1220000
KS ci ratio: 4.983949e-02	ci left: 4.919319e-03	ci right 5.171564e-03	k: 6154	n:1220000
TMPRSS13   1220000 perm   906 sec   (1346 perm/sec)   p_kst 5.044262e-03   p_cons 2.153279e-03   p_joint 2.975410e-04

Joint ci ratio: 2.194493e-01	ci left: 2.309018e-04	ci right 2.885675e-04	k: 318	n:1230000
Cons ci ratio: 7.610989e-02	ci left: 2.070109e-03	ci right 2.234689e-03	k: 2646	n:1230000
KS ci ratio: 4.961820e-02	ci left: 4.923484e-03	ci right 5.174790e-03	k: 6209	n:1230000
TMPRSS13   1230000 perm   920 sec   (1337 perm/sec)   p_kst 5.047967e-03   p_cons 2.151220e-03   p_joint 2.585366e-04

Joint ci ratio: 2.174139e-01	ci left: 2.336137e-04	ci right 2.913433e-04	k: 324	n:1240000
Cons ci ratio: 7.575290e-02	ci left: 2.073193e-03	ci right 2.237211e-03	k: 2671	n:1240000
KS ci ratio: 4.938399e-02	ci left: 4.930771e-03	ci right 5.181227e-03	k: 6268	n:1240000
TMPRSS13   1240000 perm   933 sec   (1329 perm/sec)   p_kst 5.054839e-03   p_cons 2.154032e-03   p_joint 2.612903e-04

Joint ci ratio: 2.167481e-01	ci left: 2.332578e-04	ci right 2.906995e-04	k: 326	n:1250000
Cons ci ratio: 7.534490e-02	ci left: 2.079369e-03	ci right 2.242951e-03	k: 2700	n:1250000
KS ci ratio: 4.918823e-02	ci left: 4.930832e-03	ci right 5.180270e-03	k: 6318	n:1250000
TMPRSS13   1250000 perm   947 sec   (1320 perm/sec)   p_kst 5.054400e-03   p_cons 2.160000e-03   p_joint 2.608000e-04

Joint ci ratio: 2.154343e-01	ci left: 2.344094e-04	ci right 2.917384e-04	k: 330	n:1260000
Cons ci ratio: 7.512290e-02	ci left: 2.075326e-03	ci right 2.238087e-03	k: 2716	n:1260000
KS ci ratio: 4.901413e-02	ci left: 4.926974e-03	ci right 5.175310e-03	k: 6363	n:1260000
TMPRSS13   1260000 perm   960 sec   (1313 perm/sec)   p_kst 5.050000e-03   p_cons 2.155556e-03   p_joint 2.619048e-04

Joint ci ratio: 2.144646e-01	ci left: 2.347987e-04	ci right 2.919305e-04	k: 333	n:1270000
Cons ci ratio: 7.473858e-02	ci left: 2.080619e-03	ci right 2.242925e-03	k: 2744	n:1270000
KS ci ratio: 4.885718e-02	ci left: 4.920067e-03	ci right 5.167238e-03	k: 6404	n:1270000
TMPRSS13   1270000 perm   973 sec   (1306 perm/sec)   p_kst 5.042520e-03   p_cons 2.160630e-03   p_joint 2.622047e-04

Joint ci ratio: 2.141444e-01	ci left: 2.337036e-04	ci right 2.904729e-04	k: 334	n:1280000
Cons ci ratio: 7.438700e-02	ci left: 2.084298e-03	ci right 2.246093e-03	k: 2770	n:1280000
KS ci ratio: 4.865624e-02	ci left: 4.922530e-03	ci right 5.168780e-03	k: 6457	n:1280000
TMPRSS13   1280000 perm   986 sec   (1298 perm/sec)   p_kst 5.044531e-03   p_cons 2.164063e-03   p_joint 2.609375e-04

Joint ci ratio: 2.128771e-01	ci left: 2.348270e-04	ci right 2.914875e-04	k: 338	n:1290000
Cons ci ratio: 7.398733e-02	ci left: 2.090965e-03	ci right 2.252368e-03	k: 2800	n:1290000
KS ci ratio: 4.839430e-02	ci left: 4.937977e-03	ci right 5.183633e-03	k: 6527	n:1290000
TMPRSS13   1290000 perm   999 sec   (1291 perm/sec)   p_kst 5.059690e-03   p_cons 2.170543e-03   p_joint 2.620155e-04

Joint ci ratio: 2.251718e-01	ci left: 2.068458e-04	ci right 2.600379e-04	k: 302	n:1300000
Cons ci ratio: 7.372464e-02	ci left: 2.089981e-03	ci right 2.250711e-03	k: 2820	n:1300000
KS ci ratio: 4.823952e-02	ci left: 4.931910e-03	ci right 5.176457e-03	k: 6569	n:1300000
TMPRSS13   1300000 perm   1012 sec   (1284 perm/sec)   p_kst 5.053077e-03   p_cons 2.169231e-03   p_joint 2.323077e-04

Joint ci ratio: 2.236999e-01	ci left: 2.081487e-04	ci right 2.612777e-04	k: 306	n:1310000
Cons ci ratio: 7.338710e-02	ci left: 2.093510e-03	ci right 2.253742e-03	k: 2846	n:1310000
KS ci ratio: 4.810085e-02	ci left: 4.922919e-03	ci right 5.166300e-03	k: 6607	n:1310000
TMPRSS13   1310000 perm   1026 sec   (1277 perm/sec)   p_kst 5.043511e-03   p_cons 2.172519e-03   p_joint 2.335878e-04

Joint ci ratio: 2.229748e-01	ci left: 2.080022e-04	ci right 2.608981e-04	k: 308	n:1320000
Cons ci ratio: 7.309241e-02	ci left: 2.094755e-03	ci right 2.254412e-03	k: 2869	n:1320000
KS ci ratio: 4.790183e-02	ci left: 4.926791e-03	ci right 5.169328e-03	k: 6662	n:1320000
TMPRSS13   1320000 perm   1039 sec   (1270 perm/sec)   p_kst 5.046970e-03   p_cons 2.173485e-03   p_joint 2.333333e-04

Joint ci ratio: 2.226150e-01	ci left: 2.071482e-04	ci right 2.597302e-04	k: 309	n:1330000
Cons ci ratio: 7.281386e-02	ci left: 2.095245e-03	ci right 2.254304e-03	k: 2891	n:1330000
KS ci ratio: 4.772669e-02	ci left: 4.926149e-03	ci right 5.167743e-03	k: 6711	n:1330000
TMPRSS13   1330000 perm   1053 sec   (1263 perm/sec)   p_kst 5.045865e-03   p_cons 2.173684e-03   p_joint 2.323308e-04

Joint ci ratio: 2.226152e-01	ci left: 2.056023e-04	ci right 2.577919e-04	k: 309	n:1340000
Cons ci ratio: 7.257592e-02	ci left: 2.093530e-03	ci right 2.251918e-03	k: 2910	n:1340000
KS ci ratio: 4.752520e-02	ci left: 4.931418e-03	ci right 5.172221e-03	k: 6768	n:1340000
TMPRSS13   1340000 perm   1066 sec   (1257 perm/sec)   p_kst 5.050746e-03   p_cons 2.171642e-03   p_joint 2.305970e-04

Joint ci ratio: 2.219006e-01	ci left: 2.054783e-04	ci right 2.574462e-04	k: 311	n:1350000
Cons ci ratio: 7.236505e-02	ci left: 2.090386e-03	ci right 2.248058e-03	k: 2927	n:1350000
KS ci ratio: 4.737160e-02	ci left: 4.927095e-03	ci right 5.166888e-03	k: 6812	n:1350000
TMPRSS13   1350000 perm   1080 sec   (1250 perm/sec)   p_kst 5.045926e-03   p_cons 2.168148e-03   p_joint 2.303704e-04

Joint ci ratio: 2.208413e-01	ci left: 2.060510e-04	ci right 2.578812e-04	k: 314	n:1360000
Cons ci ratio: 7.211921e-02	ci left: 2.089456e-03	ci right 2.246500e-03	k: 2947	n:1360000
KS ci ratio: 4.721256e-02	ci left: 4.924290e-03	ci right 5.163120e-03	k: 6858	n:1360000
TMPRSS13   1360000 perm   1094 sec   (1243 perm/sec)   p_kst 5.042647e-03   p_cons 2.166912e-03   p_joint 2.308824e-04

Joint ci ratio: 2.201436e-01	ci left: 2.059262e-04	ci right 2.575392e-04	k: 316	n:1370000
Cons ci ratio: 7.186372e-02	ci left: 2.089257e-03	ci right 2.245706e-03	k: 2968	n:1370000
KS ci ratio: 4.703458e-02	ci left: 4.925855e-03	ci right 5.163836e-03	k: 6910	n:1370000
TMPRSS13   1370000 perm   1108 sec   (1236 perm/sec)   p_kst 5.043796e-03   p_cons 2.166423e-03   p_joint 2.306569e-04

Joint ci ratio: 2.194524e-01	ci left: 2.058035e-04	ci right 2.572019e-04	k: 318	n:1380000
Cons ci ratio: 7.159893e-02	ci left: 2.089774e-03	ci right 2.245661e-03	k: 2990	n:1380000
KS ci ratio: 4.683494e-02	ci left: 4.932413e-03	ci right 5.169672e-03	k: 6969	n:1380000
TMPRSS13   1380000 perm   1122 sec   (1230 perm/sec)   p_kst 5.050000e-03   p_cons 2.166667e-03   p_joint 2.304348e-04

Joint ci ratio: 2.194526e-01	ci left: 2.043229e-04	ci right 2.553516e-04	k: 318	n:1390000
Cons ci ratio: 7.126597e-02	ci left: 2.094524e-03	ci right 2.250008e-03	k: 3018	n:1390000
KS ci ratio: 4.669796e-02	ci left: 4.926079e-03	ci right 5.162322e-03	k: 7010	n:1390000
TMPRSS13   1390000 perm   1137 sec   (1223 perm/sec)   p_kst 5.043165e-03   p_cons 2.171223e-03   p_joint 2.287770e-04

Joint ci ratio: 2.194528e-01	ci left: 2.028634e-04	ci right 2.535277e-04	k: 318	n:1400000
Cons ci ratio: 7.099601e-02	ci left: 2.095699e-03	ci right 2.250658e-03	k: 3041	n:1400000
KS ci ratio: 4.654227e-02	ci left: 4.924073e-03	ci right 5.159411e-03	k: 7057	n:1400000
TMPRSS13   1400000 perm   1151 sec   (1217 perm/sec)   p_kst 5.040714e-03   p_cons 2.172143e-03   p_joint 2.271429e-04

Joint ci ratio: 2.194530e-01	ci left: 2.014246e-04	ci right 2.517296e-04	k: 318	n:1410000
Cons ci ratio: 7.076382e-02	ci left: 2.094769e-03	ci right 2.249131e-03	k: 3061	n:1410000
KS ci ratio: 4.634554e-02	ci left: 4.931210e-03	ci right 5.165866e-03	k: 7117	n:1410000
TMPRSS13   1410000 perm   1165 sec   (1210 perm/sec)   p_kst 5.047518e-03   p_cons 2.170922e-03   p_joint 2.255319e-04

Joint ci ratio: 2.187683e-01	ci left: 2.013373e-04	ci right 2.514425e-04	k: 320	n:1420000
Cons ci ratio: 7.055683e-02	ci left: 2.092469e-03	ci right 2.246192e-03	k: 3079	n:1420000
KS ci ratio: 4.620631e-02	ci left: 4.926414e-03	ci right 5.160119e-03	k: 7160	n:1420000
TMPRSS13   1420000 perm   1180 sec   (1204 perm/sec)   p_kst 5.042254e-03   p_cons 2.168310e-03   p_joint 2.253521e-04

Joint ci ratio: 2.180899e-01	ci left: 2.012514e-04	ci right 2.511591e-04	k: 322	n:1430000
Cons ci ratio: 7.030617e-02	ci left: 2.092950e-03	ci right 2.246140e-03	k: 3101	n:1430000
KS ci ratio: 4.602660e-02	ci left: 4.930673e-03	ci right 5.163646e-03	k: 7216	n:1430000
TMPRSS13   1430000 perm   1194 sec   (1198 perm/sec)   p_kst 5.046154e-03   p_cons 2.168531e-03   p_joint 2.251748e-04

Joint ci ratio: 2.170841e-01	ci left: 2.018237e-04	ci right 2.516117e-04	k: 325	n:1440000
Cons ci ratio: 6.987906e-02	ci left: 2.104343e-03	ci right 2.257393e-03	k: 3139	n:1440000
KS ci ratio: 4.585848e-02	ci left: 4.932815e-03	ci right 5.165016e-03	k: 7269	n:1440000
TMPRSS13   1440000 perm   1209 sec   (1191 perm/sec)   p_kst 5.047917e-03   p_cons 2.179861e-03   p_joint 2.256944e-04

Joint ci ratio: 2.180903e-01	ci left: 1.984755e-04	ci right 2.476949e-04	k: 322	n:1450000
Cons ci ratio: 6.962451e-02	ci left: 2.105415e-03	ci right 2.257963e-03	k: 3162	n:1450000
KS ci ratio: 4.567025e-02	ci left: 4.939702e-03	ci right 5.171247e-03	k: 7329	n:1450000
TMPRSS13   1450000 perm   1223 sec   (1185 perm/sec)   p_kst 5.054483e-03   p_cons 2.180690e-03   p_joint 2.220690e-04

Joint ci ratio: 2.180904e-01	ci left: 1.971161e-04	ci right 2.459984e-04	k: 322	n:1460000
Cons ci ratio: 6.935090e-02	ci left: 2.107820e-03	ci right 2.259918e-03	k: 3187	n:1460000
KS ci ratio: 4.551529e-02	ci left: 4.939724e-03	ci right 5.170465e-03	k: 7379	n:1460000
TMPRSS13   1460000 perm   1238 sec   (1179 perm/sec)   p_kst 5.054110e-03   p_cons 2.182877e-03   p_joint 2.205479e-04

Joint ci ratio: 2.184291e-01	ci left: 1.951321e-04	ci right 2.436076e-04	k: 321	n:1470000
Cons ci ratio: 6.906972e-02	ci left: 2.110863e-03	ci right 2.262538e-03	k: 3213	n:1470000
KS ci ratio: 4.536189e-02	ci left: 4.939748e-03	ci right 5.169692e-03	k: 7429	n:1470000
TMPRSS13   1470000 perm   1253 sec   (1173 perm/sec)   p_kst 5.053741e-03   p_cons 2.185714e-03   p_joint 2.183673e-04

Joint ci ratio: 2.167525e-01	ci left: 1.970079e-04	ci right 2.455238e-04	k: 326	n:1480000
Cons ci ratio: 6.884519e-02	ci left: 2.110545e-03	ci right 2.261684e-03	k: 3234	n:1480000
KS ci ratio: 4.518273e-02	ci left: 4.945785e-03	ci right 5.175077e-03	k: 7488	n:1480000
TMPRSS13   1480000 perm   1268 sec   (1167 perm/sec)   p_kst 5.059459e-03   p_cons 2.185135e-03   p_joint 2.202703e-04

Joint ci ratio: 2.160927e-01	ci left: 1.969552e-04	ci right 2.452909e-04	k: 328	n:1490000
Cons ci ratio: 6.866512e-02	ci left: 2.107593e-03	ci right 2.258111e-03	k: 3251	n:1490000
KS ci ratio: 4.505368e-02	ci left: 4.941125e-03	ci right 5.169530e-03	k: 7531	n:1490000
TMPRSS13   1490000 perm   1283 sec   (1161 perm/sec)   p_kst 5.054362e-03   p_cons 2.181879e-03   p_joint 2.201342e-04

Joint ci ratio: 2.154388e-01	ci left: 1.969035e-04	ci right 2.450609e-04	k: 330	n:1500000
Cons ci ratio: 6.842356e-02	ci left: 2.108613e-03	ci right 2.258653e-03	k: 3274	n:1500000
KS ci ratio: 4.489002e-02	ci left: 4.944439e-03	ci right 5.172145e-03	k: 7586	n:1500000
TMPRSS13   1500000 perm   1298 sec   (1155 perm/sec)   p_kst 5.057333e-03   p_cons 2.182667e-03   p_joint 2.200000e-04

Joint ci ratio: 2.215485e-01	ci left: 1.843310e-04	ci right 2.308664e-04	k: 312	n:1510000
Cons ci ratio: 6.819489e-02	ci left: 2.108969e-03	ci right 2.258513e-03	k: 3296	n:1510000
KS ci ratio: 4.473106e-02	ci left: 4.947056e-03	ci right 5.174055e-03	k: 7640	n:1510000
TMPRSS13   1510000 perm   1313 sec   (1150 perm/sec)   p_kst 5.059603e-03   p_cons 2.182781e-03   p_joint 2.066225e-04

Joint ci ratio: 2.204942e-01	ci left: 1.849827e-04	ci right 2.314303e-04	k: 315	n:1520000
Cons ci ratio: 6.788655e-02	ci left: 2.114496e-03	ci right 2.263727e-03	k: 3326	n:1520000
KS ci ratio: 4.460584e-02	ci left: 4.942482e-03	ci right 5.168620e-03	k: 7683	n:1520000
TMPRSS13   1520000 perm   1329 sec   (1144 perm/sec)   p_kst 5.054605e-03   p_cons 2.188158e-03   p_joint 2.072368e-04

Joint ci ratio: 2.194549e-01	ci left: 1.856265e-04	ci right 2.319863e-04	k: 318	n:1530000
Cons ci ratio: 6.770373e-02	ci left: 2.112241e-03	ci right 2.260896e-03	k: 3344	n:1530000
KS ci ratio: 4.444410e-02	ci left: 4.946373e-03	ci right 5.171847e-03	k: 7739	n:1530000
TMPRSS13   1530000 perm   1344 sec   (1138 perm/sec)   p_kst 5.058170e-03   p_cons 2.185621e-03   p_joint 2.078431e-04

Joint ci ratio: 2.180917e-01	ci left: 1.868762e-04	ci right 2.332194e-04	k: 322	n:1540000
Cons ci ratio: 6.751233e-02	ci left: 2.110654e-03	ci right 2.258761e-03	k: 3363	n:1540000
KS ci ratio: 4.429268e-02	ci left: 4.948287e-03	ci right 5.173061e-03	k: 7792	n:1540000
TMPRSS13   1540000 perm   1360 sec   (1133 perm/sec)   p_kst 5.059740e-03   p_cons 2.183766e-03   p_joint 2.090909e-04

Joint ci ratio: 2.170858e-01	ci left: 1.875005e-04	ci right 2.337556e-04	k: 325	n:1550000
Cons ci ratio: 6.733251e-02	ci left: 2.108454e-03	ci right 2.255997e-03	k: 3381	n:1550000
KS ci ratio: 4.415977e-02	ci left: 4.946350e-03	ci right 5.170344e-03	k: 7839	n:1550000
TMPRSS13   1550000 perm   1375 sec   (1127 perm/sec)   p_kst 5.057419e-03   p_cons 2.181290e-03   p_joint 2.096774e-04

Joint ci ratio: 2.164230e-01	ci left: 1.875111e-04	ci right 2.336087e-04	k: 327	n:1560000
Cons ci ratio: 6.711457e-02	ci left: 2.108804e-03	ci right 2.255875e-03	k: 3403	n:1560000
KS ci ratio: 4.399162e-02	ci left: 4.952681e-03	ci right 5.176086e-03	k: 7899	n:1560000
TMPRSS13   1560000 perm   1390 sec   (1122 perm/sec)   p_kst 5.063462e-03   p_cons 2.181410e-03   p_joint 2.096154e-04

Joint ci ratio: 2.151151e-01	ci left: 1.887268e-04	ci right 2.348059e-04	k: 331	n:1570000
Cons ci ratio: 6.690852e-02	ci left: 2.108523e-03	ci right 2.255106e-03	k: 3424	n:1570000
KS ci ratio: 4.388359e-02	ci left: 4.945702e-03	ci right 5.168231e-03	k: 7938	n:1570000
TMPRSS13   1570000 perm   1406 sec   (1117 perm/sec)   p_kst 5.056051e-03   p_cons 2.180892e-03   p_joint 2.108280e-04

Joint ci ratio: 2.167540e-01	ci left: 1.845389e-04	ci right 2.299845e-04	k: 326	n:1580000
Cons ci ratio: 6.678209e-02	ci left: 2.103268e-03	ci right 2.249199e-03	k: 3437	n:1580000
KS ci ratio: 4.370759e-02	ci left: 4.954464e-03	ci right 5.176470e-03	k: 8002	n:1580000
TMPRSS13   1580000 perm   1422 sec   (1111 perm/sec)   p_kst 5.064557e-03   p_cons 2.175316e-03   p_joint 2.063291e-04

Joint ci ratio: 2.144703e-01	ci left: 1.875431e-04	ci right 2.331779e-04	k: 333	n:1590000
Cons ci ratio: 6.655016e-02	ci left: 2.104883e-03	ci right 2.250399e-03	k: 3461	n:1590000
KS ci ratio: 4.354182e-02	ci left: 4.961250e-03	ci right 5.182697e-03	k: 8063	n:1590000
TMPRSS13   1590000 perm   1438 sec   (1106 perm/sec)   p_kst 5.071069e-03   p_cons 2.176730e-03   p_joint 2.094340e-04

Joint ci ratio: 1.500725e-01	ci left: 3.942601e-04	ci right 4.588206e-04	k: 681	n:1600000
Cons ci ratio: 6.629204e-02	ci left: 2.108322e-03	ci right 2.253489e-03	k: 3488	n:1600000
KS ci ratio: 4.339671e-02	ci left: 4.963626e-03	ci right 5.184422e-03	k: 8117	n:1600000
TMPRSS13   1600000 perm   1454 sec   (1101 perm/sec)   p_kst 5.073125e-03   p_cons 2.180000e-03   p_joint 4.256250e-04

Joint ci ratio: 1.504040e-01	ci left: 3.900179e-04	ci right 4.540375e-04	k: 678	n:1610000
Cons ci ratio: 6.606517e-02	ci left: 2.109888e-03	ci right 2.254645e-03	k: 3512	n:1610000
KS ci ratio: 4.327968e-02	ci left: 4.959829e-03	ci right 5.179846e-03	k: 8161	n:1610000
TMPRSS13   1610000 perm   1470 sec   (1095 perm/sec)   p_kst 5.068944e-03   p_cons 2.181366e-03   p_joint 4.211180e-04

Joint ci ratio: 1.497438e-01	ci left: 3.911750e-04	ci right 4.550775e-04	k: 684	n:1620000
Cons ci ratio: 6.593408e-02	ci left: 2.105363e-03	ci right 2.249513e-03	k: 3526	n:1620000
KS ci ratio: 4.316622e-02	ci left: 4.955469e-03	ci right 5.174702e-03	k: 8204	n:1620000
TMPRSS13   1620000 perm   1486 sec   (1090 perm/sec)   p_kst 5.064198e-03   p_cons 2.176543e-03   p_joint 4.222222e-04

Joint ci ratio: 1.494170e-01	ci left: 3.905468e-04	ci right 4.541949e-04	k: 687	n:1630000
Cons ci ratio: 6.576655e-02	ci left: 2.103307e-03	ci right 2.246937e-03	k: 3544	n:1630000
KS ci ratio: 4.304579e-02	ci left: 4.952983e-03	ci right 5.171480e-03	k: 8250	n:1630000
TMPRSS13   1630000 perm   1502 sec   (1085 perm/sec)   p_kst 5.061350e-03   p_cons 2.174233e-03   p_joint 4.214724e-04

Joint ci ratio: 1.485556e-01	ci left: 3.928616e-04	ci right 4.564852e-04	k: 695	n:1640000
Cons ci ratio: 6.555421e-02	ci left: 2.104277e-03	ci right 2.247491e-03	k: 3567	n:1640000
KS ci ratio: 4.292896e-02	ci left: 4.949926e-03	ci right 5.167681e-03	k: 8295	n:1640000
TMPRSS13   1640000 perm   1519 sec   (1080 perm/sec)   p_kst 5.057927e-03   p_cons 2.175000e-03   p_joint 4.237805e-04

Joint ci ratio: 1.534887e-01	ci left: 3.648210e-04	ci right 4.260458e-04	k: 651	n:1650000
Cons ci ratio: 6.534391e-02	ci left: 2.105235e-03	ci right 2.248037e-03	k: 3590	n:1650000
KS ci ratio: 4.280533e-02	ci left: 4.948706e-03	ci right 5.165764e-03	k: 8343	n:1650000
TMPRSS13   1650000 perm   1535 sec   (1075 perm/sec)   p_kst 5.056364e-03   p_cons 2.175758e-03   p_joint 3.945455e-04

Joint ci ratio: 1.586869e-01	ci left: 3.383096e-04	ci right 3.971913e-04	k: 609	n:1660000
Cons ci ratio: 6.523520e-02	ci left: 2.099663e-03	ci right 2.241842e-03	k: 3602	n:1660000
KS ci ratio: 4.265724e-02	ci left: 4.953461e-03	ci right 5.169958e-03	k: 8401	n:1660000
TMPRSS13   1660000 perm   1552 sec   (1070 perm/sec)   p_kst 5.060843e-03   p_cons 2.169880e-03   p_joint 3.668675e-04

Joint ci ratio: 1.602720e-01	ci left: 3.293848e-04	ci right 3.873409e-04	k: 597	n:1670000
Cons ci ratio: 6.505492e-02	ci left: 2.098871e-03	ci right 2.240588e-03	k: 3622	n:1670000
KS ci ratio: 4.251319e-02	ci left: 4.957568e-03	ci right 5.173495e-03	k: 8458	n:1670000
TMPRSS13   1670000 perm   1568 sec   (1065 perm/sec)   p_kst 5.064671e-03   p_cons 2.168862e-03   p_joint 3.574850e-04

Joint ci ratio: 1.597386e-01	ci left: 3.297098e-04	ci right 3.875116e-04	k: 601	n:1680000
Cons ci ratio: 6.480486e-02	ci left: 2.102774e-03	ci right 2.244189e-03	k: 3650	n:1680000
KS ci ratio: 4.236060e-02	ci left: 4.963983e-03	ci right 5.179395e-03	k: 8519	n:1680000
TMPRSS13   1680000 perm   1584 sec   (1060 perm/sec)   p_kst 5.070833e-03   p_cons 2.172619e-03   p_joint 3.577381e-04

Joint ci ratio: 1.593421e-01	ci left: 3.294632e-04	ci right 3.870645e-04	k: 604	n:1690000
Cons ci ratio: 6.461930e-02	ci left: 2.102557e-03	ci right 2.243537e-03	k: 3671	n:1690000
KS ci ratio: 4.223438e-02	ci left: 4.964469e-03	ci right 5.179244e-03	k: 8570	n:1690000
TMPRSS13   1690000 perm   1601 sec   (1056 perm/sec)   p_kst 5.071006e-03   p_cons 2.172189e-03   p_joint 3.573964e-04

Joint ci ratio: 1.592107e-01	ci left: 3.280899e-04	ci right 3.853994e-04	k: 605	n:1700000
Cons ci ratio: 6.435679e-02	ci left: 2.107552e-03	ci right 2.248271e-03	k: 3701	n:1700000
KS ci ratio: 4.210437e-02	ci left: 4.966114e-03	ci right 5.180283e-03	k: 8623	n:1700000
TMPRSS13   1700000 perm   1618 sec   (1051 perm/sec)   p_kst 5.072353e-03   p_cons 2.177059e-03   p_joint 3.558824e-04

Joint ci ratio: 1.590796e-01	ci left: 3.267328e-04	ci right 3.837537e-04	k: 606	n:1710000
Cons ci ratio: 6.415777e-02	ci left: 2.108461e-03	ci right 2.248789e-03	k: 3724	n:1710000
KS ci ratio: 4.199259e-02	ci left: 4.963690e-03	ci right 5.177173e-03	k: 8669	n:1710000
TMPRSS13   1710000 perm   1635 sec   (1046 perm/sec)   p_kst 5.069591e-03   p_cons 2.177778e-03   p_joint 3.543860e-04

Joint ci ratio: 1.596067e-01	ci left: 3.226002e-04	ci right 3.791044e-04	k: 602	n:1720000
Cons ci ratio: 6.402911e-02	ci left: 2.104783e-03	ci right 2.244576e-03	k: 3739	n:1720000
KS ci ratio: 4.186238e-02	ci left: 4.965898e-03	ci right 5.178797e-03	k: 8723	n:1720000
TMPRSS13   1720000 perm   1652 sec   (1041 perm/sec)   p_kst 5.071512e-03   p_cons 2.173837e-03   p_joint 3.500000e-04

Joint ci ratio: 1.592112e-01	ci left: 3.224004e-04	ci right 3.787163e-04	k: 605	n:1730000
Cons ci ratio: 6.380762e-02	ci left: 2.107406e-03	ci right 2.246870e-03	k: 3765	n:1730000
KS ci ratio: 4.176208e-02	ci left: 4.961217e-03	ci right 5.173393e-03	k: 8765	n:1730000
TMPRSS13   1730000 perm   1669 sec   (1037 perm/sec)   p_kst 5.066474e-03   p_cons 2.176301e-03   p_joint 3.497110e-04

Joint ci ratio: 1.589492e-01	ci left: 3.216512e-04	ci right 3.777349e-04	k: 607	n:1740000
Cons ci ratio: 6.356323e-02	ci left: 2.111696e-03	ci right 2.250889e-03	k: 3794	n:1740000
KS ci ratio: 4.164349e-02	ci left: 4.961140e-03	ci right 5.172696e-03	k: 8815	n:1740000
TMPRSS13   1740000 perm   1686 sec   (1032 perm/sec)   p_kst 5.066092e-03   p_cons 2.180460e-03   p_joint 3.488506e-04

Joint ci ratio: 1.584289e-01	ci left: 3.220082e-04	ci right 3.779528e-04	k: 611	n:1750000
Cons ci ratio: 6.339643e-02	ci left: 2.110876e-03	ci right 2.249637e-03	k: 3814	n:1750000
KS ci ratio: 4.153297e-02	ci left: 4.959368e-03	ci right 5.170275e-03	k: 8862	n:1750000
TMPRSS13   1750000 perm   1703 sec   (1028 perm/sec)   p_kst 5.064000e-03   p_cons 2.179429e-03   p_joint 3.491429e-04

Joint ci ratio: 1.580420e-01	ci left: 3.218156e-04	ci right 3.775773e-04	k: 614	n:1760000
Cons ci ratio: 6.320616e-02	ci left: 2.111744e-03	ci right 2.250130e-03	k: 3837	n:1760000
KS ci ratio: 4.140465e-02	ci left: 4.962116e-03	ci right 5.172472e-03	k: 8917	n:1760000
TMPRSS13   1760000 perm   1720 sec   (1023 perm/sec)   p_kst 5.066477e-03   p_cons 2.180114e-03   p_joint 3.488636e-04

Joint ci ratio: 1.579138e-01	ci left: 3.205401e-04	ci right 3.760314e-04	k: 615	n:1770000
Cons ci ratio: 6.307493e-02	ci left: 2.108710e-03	ci right 2.246600e-03	k: 3853	n:1770000
KS ci ratio: 4.131223e-02	ci left: 4.956447e-03	ci right 5.166082e-03	k: 8957	n:1770000
TMPRSS13   1770000 perm   1738 sec   (1018 perm/sec)   p_kst 5.060452e-03   p_cons 2.176836e-03   p_joint 3.474576e-04

Joint ci ratio: 1.567724e-01	ci left: 3.235964e-04	ci right 3.791739e-04	k: 624	n:1780000
Cons ci ratio: 6.283882e-02	ci left: 2.112899e-03	ci right 2.250527e-03	k: 3882	n:1780000
KS ci ratio: 4.116528e-02	ci left: 4.964186e-03	ci right 5.173384e-03	k: 9021	n:1780000
TMPRSS13   1780000 perm   1755 sec   (1014 perm/sec)   p_kst 5.067978e-03   p_cons 2.180899e-03   p_joint 3.505618e-04

Joint ci ratio: 1.562731e-01	ci left: 3.239357e-04	ci right 3.793777e-04	k: 628	n:1790000
Cons ci ratio: 6.269375e-02	ci left: 2.110993e-03	ci right 2.248168e-03	k: 3900	n:1790000
KS ci ratio: 4.105397e-02	ci left: 4.963546e-03	ci right 5.172138e-03	k: 9070	n:1790000
TMPRSS13   1790000 perm   1772 sec   (1010 perm/sec)   p_kst 5.067039e-03   p_cons 2.178771e-03   p_joint 3.508380e-04

Joint ci ratio: 1.274841e-01	ci left: 4.915266e-04	ci right 5.589861e-04	k: 944	n:1800000
Cons ci ratio: 6.250972e-02	ci left: 2.111843e-03	ci right 2.248655e-03	k: 3923	n:1800000
KS ci ratio: 4.091876e-02	ci left: 4.968963e-03	ci right 5.177079e-03	k: 9130	n:1800000
TMPRSS13   1800000 perm   1791 sec   (1005 perm/sec)   p_kst 5.072222e-03   p_cons 2.179444e-03   p_joint 5.244444e-04

Joint ci ratio: 1.272152e-01	ci left: 4.909505e-04	ci right 5.581781e-04	k: 948	n:1810000
Cons ci ratio: 6.235106e-02	ci left: 2.111053e-03	ci right 2.247454e-03	k: 3943	n:1810000
KS ci ratio: 4.081836e-02	ci left: 4.966118e-03	ci right 5.173592e-03	k: 9175	n:1810000
TMPRSS13   1810000 perm   1808 sec   (1001 perm/sec)   p_kst 5.069061e-03   p_cons 2.178453e-03   p_joint 5.237569e-04

Joint ci ratio: 1.268149e-01	ci left: 4.914450e-04	ci right 5.585126e-04	k: 954	n:1820000
Cons ci ratio: 6.221719e-02	ci left: 2.108648e-03	ci right 2.244592e-03	k: 3960	n:1820000
KS ci ratio: 4.072093e-02	ci left: 4.962761e-03	ci right 5.169588e-03	k: 9219	n:1820000
TMPRSS13   1820000 perm   1826 sec   (997 perm/sec)   p_kst 5.065385e-03   p_cons 2.175824e-03   p_joint 5.241758e-04

Joint ci ratio: 1.262214e-01	ci left: 4.935219e-04	ci right 5.605342e-04	k: 963	n:1830000
Cons ci ratio: 6.204512e-02	ci left: 2.108961e-03	ci right 2.244535e-03	k: 3982	n:1830000
KS ci ratio: 4.059117e-02	ci left: 4.967555e-03	ci right 5.173907e-03	k: 9278	n:1830000
TMPRSS13   1830000 perm   1844 sec   (992 perm/sec)   p_kst 5.069945e-03   p_cons 2.175956e-03   p_joint 5.262295e-04

Joint ci ratio: 1.260255e-01	ci left: 4.924187e-04	ci right 5.591697e-04	k: 966	n:1840000
Cons ci ratio: 6.186673e-02	ci left: 2.109806e-03	ci right 2.245030e-03	k: 4005	n:1840000
KS ci ratio: 4.047135e-02	ci left: 4.970146e-03	ci right 5.175982e-03	k: 9333	n:1840000
TMPRSS13   1840000 perm   1862 sec   (988 perm/sec)   p_kst 5.072283e-03   p_cons 2.176630e-03   p_joint 5.250000e-04

Joint ci ratio: 1.256363e-01	ci left: 4.928981e-04	ci right 5.594924e-04	k: 972	n:1850000
Cons ci ratio: 6.173596e-02	ci left: 2.107448e-03	ci right 2.242226e-03	k: 4022	n:1850000
KS ci ratio: 4.034180e-02	ci left: 4.975385e-03	ci right 5.180764e-03	k: 9393	n:1850000
TMPRSS13   1850000 perm   1880 sec   (984 perm/sec)   p_kst 5.077297e-03   p_cons 2.174054e-03   p_joint 5.254054e-04

Joint ci ratio: 1.257659e-01	ci left: 4.892066e-04	ci right 5.553754e-04	k: 970	n:1860000
Cons ci ratio: 6.155259e-02	ci left: 2.108822e-03	ci right 2.243273e-03	k: 4046	n:1860000
KS ci ratio: 4.024772e-02	ci left: 4.972053e-03	ci right 5.176804e-03	k: 9437	n:1860000
TMPRSS13   1860000 perm   1898 sec   (980 perm/sec)   p_kst 5.073656e-03   p_cons 2.175269e-03   p_joint 5.215054e-04

Joint ci ratio: 1.253150e-01	ci left: 4.902163e-04	ci right 5.562663e-04	k: 977	n:1870000
Cons ci ratio: 6.133312e-02	ci left: 2.112815e-03	ci right 2.247023e-03	k: 4075	n:1870000
KS ci ratio: 4.015856e-02	ci left: 4.967699e-03	ci right 5.171807e-03	k: 9479	n:1870000
TMPRSS13   1870000 perm   1916 sec   (976 perm/sec)   p_kst 5.068984e-03   p_cons 2.179144e-03   p_joint 5.224599e-04

Joint ci ratio: 1.248688e-01	ci left: 4.912157e-04	ci right 5.571472e-04	k: 984	n:1880000
Cons ci ratio: 6.120569e-02	ci left: 2.110481e-03	ci right 2.244252e-03	k: 4092	n:1880000
KS ci ratio: 4.004042e-02	ci left: 4.970763e-03	ci right 5.174383e-03	k: 9535	n:1880000
TMPRSS13   1880000 perm   1934 sec   (972 perm/sec)   p_kst 5.071809e-03   p_cons 2.176596e-03   p_joint 5.234043e-04

Joint ci ratio: 1.266173e-01	ci left: 4.747800e-04	ci right 5.394649e-04	k: 957	n:1890000
Cons ci ratio: 6.110141e-02	ci left: 2.106608e-03	ci right 2.239898e-03	k: 4106	n:1890000
KS ci ratio: 3.991703e-02	ci left: 4.975368e-03	ci right 5.178534e-03	k: 9594	n:1890000
TMPRSS13   1890000 perm   1952 sec   (968 perm/sec)   p_kst 5.076190e-03   p_cons 2.172487e-03   p_joint 5.063492e-04

Joint ci ratio: 1.262882e-01	ci left: 4.748295e-04	ci right 5.393404e-04	k: 962	n:1900000
Cons ci ratio: 6.090885e-02	ci left: 2.108996e-03	ci right 2.242002e-03	k: 4132	n:1900000
KS ci ratio: 3.979893e-02	ci left: 4.978883e-03	ci right 5.181577e-03	k: 9651	n:1900000
TMPRSS13   1900000 perm   1971 sec   (964 perm/sec)   p_kst 5.079474e-03   p_cons 2.174737e-03   p_joint 5.063158e-04

Joint ci ratio: 1.262228e-01	ci left: 4.728505e-04	ci right 5.370567e-04	k: 963	n:1910000
Cons ci ratio: 6.075471e-02	ci left: 2.108782e-03	ci right 2.241426e-03	k: 4153	n:1910000
KS ci ratio: 3.970242e-02	ci left: 4.977178e-03	ci right 5.179301e-03	k: 9698	n:1910000
TMPRSS13   1910000 perm   1990 sec   (960 perm/sec)   p_kst 5.077487e-03   p_cons 2.174346e-03   p_joint 5.041885e-04

Joint ci ratio: 1.274188e-01	ci left: 4.613100e-04	ci right 5.245875e-04	k: 945	n:1920000
Cons ci ratio: 6.065271e-02	ci left: 2.104980e-03	ci right 2.237154e-03	k: 4167	n:1920000
KS ci ratio: 3.958213e-02	ci left: 4.981680e-03	ci right 5.183358e-03	k: 9757	n:1920000
TMPRSS13   1920000 perm   2009 sec   (956 perm/sec)   p_kst 5.081771e-03   p_cons 2.170312e-03   p_joint 4.921875e-04

Joint ci ratio: 1.272173e-01	ci left: 4.604247e-04	ci right 5.234733e-04	k: 948	n:1930000
Cons ci ratio: 6.047157e-02	ci left: 2.106830e-03	ci right 2.238712e-03	k: 4192	n:1930000
KS ci ratio: 3.948718e-02	ci left: 4.979980e-03	ci right 5.181095e-03	k: 9804	n:1930000
TMPRSS13   1930000 perm   2029 sec   (951 perm/sec)   p_kst 5.079793e-03   p_cons 2.172021e-03   p_joint 4.911917e-04

Joint ci ratio: 1.268170e-01	ci left: 4.610459e-04	ci right 5.239660e-04	k: 954	n:1940000
Cons ci ratio: 6.024197e-02	ci left: 2.112216e-03	ci right 2.243916e-03	k: 4224	n:1940000
KS ci ratio: 3.938489e-02	ci left: 4.980340e-03	ci right 5.180936e-03	k: 9855	n:1940000
TMPRSS13   1940000 perm   2048 sec   (947 perm/sec)   p_kst 5.079897e-03   p_cons 2.177320e-03   p_joint 4.917526e-04

Joint ci ratio: 1.266845e-01	ci left: 4.596746e-04	ci right 5.223372e-04	k: 956	n:1950000
Cons ci ratio: 6.009992e-02	ci left: 2.111487e-03	ci right 2.242819e-03	k: 4244	n:1950000
KS ci ratio: 3.930332e-02	ci left: 4.975618e-03	ci right 5.175600e-03	k: 9896	n:1950000
TMPRSS13   1950000 perm   2067 sec   (943 perm/sec)   p_kst 5.074872e-03   p_cons 2.176410e-03   p_joint 4.902564e-04

Joint ci ratio: 1.262236e-01	ci left: 4.607878e-04	ci right 5.233565e-04	k: 963	n:1960000
Cons ci ratio: 5.996591e-02	ci left: 2.110262e-03	ci right 2.241216e-03	k: 4263	n:1960000
KS ci ratio: 3.919452e-02	ci left: 4.978018e-03	ci right 5.177530e-03	k: 9951	n:1960000
TMPRSS13   1960000 perm   2086 sec   (940 perm/sec)   p_kst 5.077041e-03   p_cons 2.175000e-03   p_joint 4.913265e-04

Joint ci ratio: 1.255094e-01	ci left: 4.638568e-04	ci right 5.264593e-04	k: 974	n:1970000
Cons ci ratio: 5.976989e-02	ci left: 2.113551e-03	ci right 2.244265e-03	k: 4291	n:1970000
KS ci ratio: 3.908074e-02	ci left: 4.981903e-03	ci right 5.180978e-03	k: 10009	n:1970000
TMPRSS13   1970000 perm   2105 sec   (936 perm/sec)   p_kst 5.080711e-03   p_cons 2.178173e-03   p_joint 4.944162e-04

Joint ci ratio: 1.250612e-01	ci left: 4.649386e-04	ci right 5.274465e-04	k: 981	n:1980000
Cons ci ratio: 5.959653e-02	ci left: 2.115314e-03	ci right 2.245745e-03	k: 4316	n:1980000
KS ci ratio: 3.899714e-02	ci left: 4.978247e-03	ci right 5.176740e-03	k: 10052	n:1980000
TMPRSS13   1980000 perm   2125 sec   (932 perm/sec)   p_kst 5.076768e-03   p_cons 2.179798e-03   p_joint 4.954545e-04

Joint ci ratio: 1.282362e-01	ci left: 4.392453e-04	ci right 4.999122e-04	k: 933	n:1990000
Cons ci ratio: 5.947960e-02	ci left: 2.113100e-03	ci right 2.243130e-03	k: 4333	n:1990000
KS ci ratio: 3.889086e-02	ci left: 4.980600e-03	ci right 5.178634e-03	k: 10107	n:1990000
TMPRSS13   1990000 perm   2145 sec   (928 perm/sec)   p_kst 5.078894e-03   p_cons 2.177387e-03   p_joint 4.688442e-04

Joint ci ratio: 1.278262e-01	ci left: 4.399530e-04	ci right 5.005087e-04	k: 939	n:2000000
Cons ci ratio: 5.932239e-02	ci left: 2.113863e-03	ci right 2.243585e-03	k: 4356	n:2000000
KS ci ratio: 3.878736e-02	ci left: 4.982434e-03	ci right 5.180003e-03	k: 10161	n:2000000
TMPRSS13   2000000 perm   2164 sec   (924 perm/sec)   p_kst 5.080500e-03   p_cons 2.178000e-03   p_joint 4.695000e-04

Joint ci ratio: 1.274202e-01	ci left: 4.406540e-04	ci right 5.010989e-04	k: 945	n:2010000
Cons ci ratio: 5.913259e-02	ci left: 2.117071e-03	ci right 2.246559e-03	k: 4384	n:2010000
KS ci ratio: 3.869420e-02	ci left: 4.981788e-03	ci right 5.178846e-03	k: 10210	n:2010000
TMPRSS13   2010000 perm   2184 sec   (920 perm/sec)   p_kst 5.079602e-03   p_cons 2.181095e-03   p_joint 4.701493e-04

Joint ci ratio: 1.270180e-01	ci left: 4.413483e-04	ci right 5.016829e-04	k: 951	n:2020000
Cons ci ratio: 5.895800e-02	ci left: 2.119272e-03	ci right 2.248499e-03	k: 4410	n:2020000
KS ci ratio: 3.858848e-02	ci left: 4.984581e-03	ci right 5.181199e-03	k: 10266	n:2020000
TMPRSS13   2020000 perm   2205 sec   (916 perm/sec)   p_kst 5.082178e-03   p_cons 2.183168e-03   p_joint 4.707921e-04

Joint ci ratio: 1.267520e-01	ci left: 4.410821e-04	ci right 5.012446e-04	k: 955	n:2030000
Cons ci ratio: 5.881817e-02	ci left: 2.119024e-03	ci right 2.247920e-03	k: 4431	n:2030000
KS ci ratio: 3.845742e-02	ci left: 4.994177e-03	ci right 5.190490e-03	k: 10336	n:2030000
TMPRSS13   2030000 perm   2227 sec   (912 perm/sec)   p_kst 5.091626e-03   p_cons 2.182759e-03   p_joint 4.704433e-04

Joint ci ratio: 1.287204e-01	ci left: 4.251582e-04	ci right 4.841181e-04	k: 926	n:2040000
Cons ci ratio: 5.869253e-02	ci left: 2.117814e-03	ci right 2.246351e-03	k: 4450	n:2040000
KS ci ratio: 3.838147e-02	ci left: 4.989601e-03	ci right 5.185337e-03	k: 10377	n:2040000
TMPRSS13   2040000 perm   2250 sec   (907 perm/sec)   p_kst 5.086765e-03   p_cons 2.181373e-03   p_joint 4.539216e-04

Joint ci ratio: 1.283746e-01	ci left: 4.254449e-04	ci right 4.842739e-04	k: 931	n:2050000
Cons ci ratio: 5.850216e-02	ci left: 2.121422e-03	ci right 2.249747e-03	k: 4479	n:2050000
KS ci ratio: 3.828198e-02	ci left: 4.991351e-03	ci right 5.186637e-03	k: 10431	n:2050000
TMPRSS13   2050000 perm   2271 sec   (903 perm/sec)   p_kst 5.088293e-03   p_cons 2.184878e-03   p_joint 4.541463e-04

Joint ci ratio: 1.282372e-01	ci left: 4.243193e-04	ci right 4.829251e-04	k: 933	n:2060000
Cons ci ratio: 5.835254e-02	ci left: 2.122126e-03	ci right 2.250154e-03	k: 4502	n:2060000
KS ci ratio: 3.817959e-02	ci left: 4.994045e-03	ci right 5.188903e-03	k: 10487	n:2060000
TMPRSS13   2060000 perm   2292 sec   (899 perm/sec)   p_kst 5.090777e-03   p_cons 2.185437e-03   p_joint 4.529126e-04

Joint ci ratio: 1.278272e-01	ci left: 4.250752e-04	ci right 4.835835e-04	k: 939	n:2070000
Cons ci ratio: 5.821697e-02	ci left: 2.121871e-03	ci right 2.249576e-03	k: 4523	n:2070000
KS ci ratio: 3.807983e-02	ci left: 4.996236e-03	ci right 5.190659e-03	k: 10542	n:2070000
TMPRSS13   2070000 perm   2314 sec   (895 perm/sec)   p_kst 5.092754e-03   p_cons 2.185024e-03   p_joint 4.536232e-04

Joint ci ratio: 1.278955e-01	ci left: 4.225661e-04	ci right 4.807625e-04	k: 938	n:2080000
Cons ci ratio: 5.808873e-02	ci left: 2.121146e-03	ci right 2.248516e-03	k: 4543	n:2080000
KS ci ratio: 3.797726e-02	ci left: 4.999360e-03	ci right 5.193368e-03	k: 10599	n:2080000
TMPRSS13   2080000 perm   2335 sec   (891 perm/sec)   p_kst 5.095673e-03   p_cons 2.184135e-03   p_joint 4.509615e-04

Joint ci ratio: 1.345860e-01	ci left: 3.784316e-04	ci right 4.334944e-04	k: 847	n:2090000
Cons ci ratio: 5.798044e-02	ci left: 2.119012e-03	ci right 2.246010e-03	k: 4560	n:2090000
KS ci ratio: 3.785765e-02	ci left: 5.007193e-03	ci right 5.200881e-03	k: 10666	n:2090000
TMPRSS13   2090000 perm   2355 sec   (887 perm/sec)   p_kst 5.103349e-03   p_cons 2.181818e-03   p_joint 4.052632e-04

Joint ci ratio: 1.341123e-01	ci left: 3.793907e-04	ci right 4.343833e-04	k: 853	n:2100000
Cons ci ratio: 5.788543e-02	ci left: 2.115961e-03	ci right 2.242561e-03	k: 4575	n:2100000
KS ci ratio: 3.776040e-02	ci left: 5.009292e-03	ci right 5.202553e-03	k: 10721	n:2100000
TMPRSS13   2100000 perm   2376 sec   (884 perm/sec)   p_kst 5.105238e-03   p_cons 2.178571e-03   p_joint 4.061905e-04

Joint ci ratio: 1.337993e-01	ci left: 3.794248e-04	ci right 4.342838e-04	k: 857	n:2110000
Cons ci ratio: 5.774678e-02	ci left: 2.116209e-03	ci right 2.242510e-03	k: 4597	n:2110000
KS ci ratio: 3.769202e-02	ci left: 5.003860e-03	ci right 5.196554e-03	k: 10760	n:2110000
TMPRSS13   2110000 perm   2398 sec   (880 perm/sec)   p_kst 5.099526e-03   p_cons 2.178673e-03   p_joint 4.061611e-04

Joint ci ratio: 1.367824e-01	ci left: 3.607727e-04	ci right 4.141925e-04	k: 820	n:2120000
Cons ci ratio: 5.761537e-02	ci left: 2.115989e-03	ci right 2.241980e-03	k: 4618	n:2120000
KS ci ratio: 3.761526e-02	ci left: 5.000816e-03	ci right 5.192992e-03	k: 10804	n:2120000
TMPRSS13   2120000 perm   2419 sec   (876 perm/sec)   p_kst 5.096226e-03   p_cons 2.178302e-03   p_joint 3.867925e-04

Joint ci ratio: 1.363678e-01	ci left: 3.613461e-04	ci right 4.146755e-04	k: 825	n:2130000
Cons ci ratio: 5.748485e-02	ci left: 2.115772e-03	ci right 2.241456e-03	k: 4639	n:2130000
KS ci ratio: 3.752332e-02	ci left: 5.001987e-03	ci right 5.193728e-03	k: 10857	n:2130000
TMPRSS13   2130000 perm   2440 sec   (873 perm/sec)   p_kst 5.097183e-03   p_cons 2.177934e-03   p_joint 3.873239e-04

Joint ci ratio: 1.366163e-01	ci left: 3.583035e-04	ci right 4.112881e-04	k: 822	n:2140000
Cons ci ratio: 5.728137e-02	ci left: 2.121085e-03	ci right 2.246623e-03	k: 4672	n:2140000
KS ci ratio: 3.742516e-02	ci left: 5.005000e-03	ci right 5.196343e-03	k: 10914	n:2140000
TMPRSS13   2140000 perm   2461 sec   (870 perm/sec)   p_kst 5.100000e-03   p_cons 2.183178e-03   p_joint 3.841121e-04

Joint ci ratio: 1.365335e-01	ci left: 3.570862e-04	ci right 4.098561e-04	k: 823	n:2150000
Cons ci ratio: 5.714090e-02	ci left: 2.121764e-03	ci right 2.247024e-03	k: 4695	n:2150000
KS ci ratio: 3.736201e-02	ci left: 4.998769e-03	ci right 5.189545e-03	k: 10951	n:2150000
TMPRSS13   2150000 perm   2482 sec   (866 perm/sec)   p_kst 5.093488e-03   p_cons 2.183721e-03   p_joint 3.827907e-04

Joint ci ratio: 1.363681e-01	ci left: 3.563273e-04	ci right 4.089162e-04	k: 825	n:2160000
Cons ci ratio: 5.703176e-02	ci left: 2.120156e-03	ci right 2.245074e-03	k: 4713	n:2160000
KS ci ratio: 3.726341e-02	ci left: 5.002228e-03	ci right 5.192621e-03	k: 11009	n:2160000
TMPRSS13   2160000 perm   2503 sec   (863 perm/sec)   p_kst 5.096759e-03   p_cons 2.181944e-03   p_joint 3.819444e-04

Joint ci ratio: 1.361212e-01	ci left: 3.560206e-04	ci right 4.084614e-04	k: 828	n:2170000
Cons ci ratio: 5.690516e-02	ci left: 2.119925e-03	ci right 2.244543e-03	k: 4734	n:2170000
KS ci ratio: 3.718924e-02	ci left: 4.999264e-03	ci right 5.189158e-03	k: 11053	n:2170000
TMPRSS13   2170000 perm   2524 sec   (860 perm/sec)   p_kst 5.093548e-03   p_cons 2.181567e-03   p_joint 3.815668e-04

Joint ci ratio: 1.357125e-01	ci left: 3.566031e-04	ci right 4.089592e-04	k: 833	n:2180000
Cons ci ratio: 5.679137e-02	ci left: 2.118792e-03	ci right 2.243087e-03	k: 4753	n:2180000
KS ci ratio: 3.709870e-02	ci left: 5.000872e-03	ci right 5.190355e-03	k: 11107	n:2180000
TMPRSS13   2180000 perm   2545 sec   (857 perm/sec)   p_kst 5.094954e-03   p_cons 2.180275e-03   p_joint 3.821101e-04

Joint ci ratio: 1.480326e-01	ci left: 2.963951e-04	ci right 3.442119e-04	k: 700	n:2190000
Cons ci ratio: 5.667826e-02	ci left: 2.117670e-03	ci right 2.241643e-03	k: 4772	n:2190000
KS ci ratio: 3.700050e-02	ci left: 5.004728e-03	ci right 5.193844e-03	k: 11166	n:2190000
TMPRSS13   2190000 perm   2566 sec   (853 perm/sec)   p_kst 5.098630e-03   p_cons 2.178995e-03   p_joint 3.196347e-04

Joint ci ratio: 1.478219e-01	ci left: 2.959232e-04	ci right 3.435900e-04	k: 702	n:2200000
Cons ci ratio: 5.652446e-02	ci left: 2.119695e-03	ci right 2.243439e-03	k: 4798	n:2200000
KS ci ratio: 3.692788e-02	ci left: 5.001794e-03	ci right 5.190421e-03	k: 11210	n:2200000
TMPRSS13   2200000 perm   2587 sec   (850 perm/sec)   p_kst 5.095455e-03   p_cons 2.180909e-03   p_joint 3.190909e-04

Joint ci ratio: 1.475075e-01	ci left: 2.958915e-04	ci right 3.434429e-04	k: 705	n:2210000
Cons ci ratio: 5.638362e-02	ci left: 2.120810e-03	ci right 2.244301e-03	k: 4822	n:2210000
KS ci ratio: 3.685569e-02	ci left: 4.998888e-03	ci right 5.187028e-03	k: 11254	n:2210000
TMPRSS13   2210000 perm   2609 sec   (847 perm/sec)   p_kst 5.092308e-03   p_cons 2.181900e-03   p_joint 3.190045e-04

Joint ci ratio: 1.471951e-01	ci left: 2.958602e-04	ci right 3.432970e-04	k: 708	n:2220000
Cons ci ratio: 5.627874e-02	ci left: 2.119251e-03	ci right 2.242414e-03	k: 4840	n:2220000
KS ci ratio: 3.676103e-02	ci left: 5.002256e-03	ci right 5.190030e-03	k: 11312	n:2220000
TMPRSS13   2220000 perm   2630 sec   (844 perm/sec)   p_kst 5.095495e-03   p_cons 2.180180e-03   p_joint 3.189189e-04

Joint ci ratio: 1.470915e-01	ci left: 2.949654e-04	ci right 3.422225e-04	k: 709	n:2230000
Cons ci ratio: 5.613395e-02	ci left: 2.120801e-03	ci right 2.243726e-03	k: 4865	n:2230000
KS ci ratio: 3.668169e-02	ci left: 5.001596e-03	ci right 5.188931e-03	k: 11361	n:2230000
TMPRSS13   2230000 perm   2651 sec   (841 perm/sec)   p_kst 5.094619e-03   p_cons 2.181614e-03   p_joint 3.179372e-04

Joint ci ratio: 1.469881e-01	ci left: 2.940786e-04	ci right 3.411576e-04	k: 710	n:2240000
Cons ci ratio: 5.604771e-02	ci left: 2.117935e-03	ci right 2.240500e-03	k: 4880	n:2240000
KS ci ratio: 3.658515e-02	ci left: 5.005808e-03	ci right 5.192797e-03	k: 11421	n:2240000
TMPRSS13   2240000 perm   2673 sec   (838 perm/sec)   p_kst 5.098661e-03   p_cons 2.178571e-03   p_joint 3.169643e-04

Joint ci ratio: 1.465764e-01	ci left: 2.944841e-04	ci right 3.414843e-04	k: 714	n:2250000
Cons ci ratio: 5.590468e-02	ci left: 2.119478e-03	ci right 2.241809e-03	k: 4905	n:2250000
KS ci ratio: 3.649575e-02	ci left: 5.008221e-03	ci right 5.194834e-03	k: 11477	n:2250000
TMPRSS13   2250000 perm   2695 sec   (835 perm/sec)   p_kst 5.100889e-03   p_cons 2.180000e-03   p_joint 3.173333e-04

Joint ci ratio: 1.464740e-01	ci left: 2.936073e-04	ci right 3.404321e-04	k: 715	n:2260000
Cons ci ratio: 5.576275e-02	ci left: 2.121007e-03	ci right 2.243106e-03	k: 4930	n:2260000
KS ci ratio: 3.640700e-02	ci left: 5.010614e-03	ci right 5.196852e-03	k: 11533	n:2260000
TMPRSS13   2260000 perm   2717 sec   (832 perm/sec)   p_kst 5.103097e-03   p_cons 2.181416e-03   p_joint 3.163717e-04

Joint ci ratio: 1.461681e-01	ci left: 2.935871e-04	ci right 3.403023e-04	k: 718	n:2270000
Cons ci ratio: 5.563877e-02	ci left: 2.121220e-03	ci right 2.243051e-03	k: 4952	n:2270000
KS ci ratio: 3.633782e-02	ci left: 5.007748e-03	ci right 5.193518e-03	k: 11577	n:2270000
TMPRSS13   2270000 perm   2739 sec   (829 perm/sec)   p_kst 5.100000e-03   p_cons 2.181498e-03   p_joint 3.162996e-04

Joint ci ratio: 1.460667e-01	ci left: 2.927220e-04	ci right 3.392644e-04	k: 719	n:2280000
Cons ci ratio: 5.552120e-02	ci left: 2.120999e-03	ci right 2.242551e-03	k: 4973	n:2280000
KS ci ratio: 3.626432e-02	ci left: 5.006211e-03	ci right 5.191541e-03	k: 11624	n:2280000
TMPRSS13   2280000 perm   2761 sec   (826 perm/sec)   p_kst 5.098246e-03   p_cons 2.181140e-03   p_joint 3.153509e-04

Joint ci ratio: 1.459654e-01	ci left: 2.918644e-04	ci right 3.382355e-04	k: 720	n:2290000
Cons ci ratio: 5.539326e-02	ci left: 2.121642e-03	ci right 2.242941e-03	k: 4996	n:2290000
KS ci ratio: 3.619126e-02	ci left: 5.004688e-03	ci right 5.189580e-03	k: 11671	n:2290000
TMPRSS13   2290000 perm   2783 sec   (823 perm/sec)   p_kst 5.096507e-03   p_cons 2.181659e-03   p_joint 3.144105e-04

Joint ci ratio: 1.455622e-01	ci left: 2.922711e-04	ci right 3.385674e-04	k: 724	n:2300000
Cons ci ratio: 5.527724e-02	ci left: 2.121421e-03	ci right 2.242446e-03	k: 5017	n:2300000
KS ci ratio: 3.610936e-02	ci left: 5.005763e-03	ci right 5.190269e-03	k: 11724	n:2300000
TMPRSS13   2300000 perm   2805 sec   (820 perm/sec)   p_kst 5.097391e-03   p_cons 2.181304e-03   p_joint 3.147826e-04

Joint ci ratio: 1.451622e-01	ci left: 2.926745e-04	ci right 3.388963e-04	k: 728	n:2310000
Cons ci ratio: 5.512359e-02	ci left: 2.124192e-03	ci right 2.245027e-03	k: 5045	n:2310000
KS ci ratio: 3.603877e-02	ci left: 5.003827e-03	ci right 5.187893e-03	k: 11770	n:2310000
TMPRSS13   2310000 perm   2828 sec   (817 perm/sec)   p_kst 5.095238e-03   p_cons 2.183983e-03   p_joint 3.151515e-04

Joint ci ratio: 1.449636e-01	ci left: 2.922438e-04	ci right 3.383289e-04	k: 730	n:2320000
Cons ci ratio: 5.499294e-02	ci left: 2.125238e-03	ci right 2.245837e-03	k: 5069	n:2320000
KS ci ratio: 3.596248e-02	ci left: 5.003617e-03	ci right 5.187277e-03	k: 11820	n:2320000
TMPRSS13   2320000 perm   2850 sec   (814 perm/sec)   p_kst 5.094828e-03   p_cons 2.184914e-03   p_joint 3.146552e-04

Joint ci ratio: 1.474044e-01	ci left: 2.810657e-04	ci right 3.262001e-04	k: 706	n:2330000
Cons ci ratio: 5.488481e-02	ci left: 2.124583e-03	ci right 2.244900e-03	k: 5089	n:2330000
KS ci ratio: 3.588059e-02	ci left: 5.005110e-03	ci right 5.188398e-03	k: 11874	n:2330000
TMPRSS13   2330000 perm   2872 sec   (811 perm/sec)   p_kst 5.096137e-03   p_cons 2.184120e-03   p_joint 3.030043e-04

Joint ci ratio: 1.477183e-01	ci left: 2.786298e-04	ci right 3.234767e-04	k: 703	n:2340000
Cons ci ratio: 5.472369e-02	ci left: 2.128148e-03	ci right 2.248303e-03	k: 5119	n:2340000
KS ci ratio: 3.580832e-02	ci left: 5.004049e-03	ci right 5.186922e-03	k: 11922	n:2340000
TMPRSS13   2340000 perm   2894 sec   (809 perm/sec)   p_kst 5.094872e-03   p_cons 2.187607e-03   p_joint 3.004274e-04

Joint ci ratio: 1.477184e-01	ci left: 2.774441e-04	ci right 3.221003e-04	k: 703	n:2350000
Cons ci ratio: 5.463845e-02	ci left: 2.125808e-03	ci right 2.245637e-03	k: 5135	n:2350000
KS ci ratio: 3.573648e-02	ci left: 5.002998e-03	ci right 5.185459e-03	k: 11970	n:2350000
TMPRSS13   2350000 perm   2917 sec   (806 perm/sec)   p_kst 5.093617e-03   p_cons 2.185106e-03   p_joint 2.991489e-04

Joint ci ratio: 1.476137e-01	ci left: 2.766766e-04	ci right 3.211748e-04	k: 704	n:2360000
Cons ci ratio: 5.456422e-02	ci left: 2.122651e-03	ci right 2.242135e-03	k: 5149	n:2360000
KS ci ratio: 3.564570e-02	ci left: 5.007416e-03	ci right 5.189564e-03	k: 12031	n:2360000
TMPRSS13   2360000 perm   2940 sec   (803 perm/sec)   p_kst 5.097881e-03   p_cons 2.181780e-03   p_joint 2.983051e-04

Joint ci ratio: 1.475091e-01	ci left: 2.759155e-04	ci right 3.202572e-04	k: 705	n:2370000
Cons ci ratio: 5.444277e-02	ci left: 2.123267e-03	ci right 2.242511e-03	k: 5172	n:2370000
KS ci ratio: 3.555413e-02	ci left: 5.012216e-03	ci right 5.194060e-03	k: 12093	n:2370000
TMPRSS13   2370000 perm   2962 sec   (800 perm/sec)   p_kst 5.102532e-03   p_cons 2.182278e-03   p_joint 2.974684e-04

Joint ci ratio: 1.475092e-01	ci left: 2.747562e-04	ci right 3.189116e-04	k: 705	n:2380000
Cons ci ratio: 5.434310e-02	ci left: 2.122220e-03	ci right 2.241181e-03	k: 5191	n:2380000
KS ci ratio: 3.546766e-02	ci left: 5.015726e-03	ci right 5.197246e-03	k: 12152	n:2380000
TMPRSS13   2380000 perm   2985 sec   (797 perm/sec)   p_kst 5.105882e-03   p_cons 2.181092e-03   p_joint 2.962185e-04

Joint ci ratio: 1.473008e-01	ci left: 2.744126e-04	ci right 3.184449e-04	k: 707	n:2390000
Cons ci ratio: 5.424919e-02	ci left: 2.120770e-03	ci right 2.239437e-03	k: 5209	n:2390000
KS ci ratio: 3.539785e-02	ci left: 5.014645e-03	ci right 5.195762e-03	k: 12200	n:2390000
TMPRSS13   2390000 perm   3008 sec   (794 perm/sec)   p_kst 5.104603e-03   p_cons 2.179498e-03   p_joint 2.958159e-04

Joint ci ratio: 1.469897e-01	ci left: 2.744731e-04	ci right 3.184140e-04	k: 710	n:2400000
Cons ci ratio: 5.412464e-02	ci left: 2.121798e-03	ci right 2.240242e-03	k: 5233	n:2400000
KS ci ratio: 3.531251e-02	ci left: 5.018117e-03	ci right 5.198914e-03	k: 12259	n:2400000
TMPRSS13   2400000 perm   3031 sec   (792 perm/sec)   p_kst 5.107917e-03   p_cons 2.180417e-03   p_joint 2.958333e-04

Joint ci ratio: 1.466805e-01	ci left: 2.745333e-04	ci right 3.183833e-04	k: 713	n:2410000
Cons ci ratio: 5.397524e-02	ci left: 2.124865e-03	ci right 2.243142e-03	k: 5262	n:2410000
KS ci ratio: 3.524793e-02	ci left: 5.015802e-03	ci right 5.196178e-03	k: 12304	n:2410000
TMPRSS13   2410000 perm   3054 sec   (789 perm/sec)   p_kst 5.105394e-03   p_cons 2.183402e-03   p_joint 2.958506e-04

Joint ci ratio: 1.485658e-01	ci left: 2.662355e-04	ci right 3.093552e-04	k: 695	n:2420000
Cons ci ratio: 5.388322e-02	ci left: 2.123422e-03	ci right 2.241411e-03	k: 5280	n:2420000
KS ci ratio: 3.516653e-02	ci left: 5.018422e-03	ci right 5.198467e-03	k: 12361	n:2420000
TMPRSS13   2420000 perm   3077 sec   (786 perm/sec)   p_kst 5.107851e-03   p_cons 2.181818e-03   p_joint 2.871901e-04

Joint ci ratio: 1.483528e-01	ci left: 2.659324e-04	ci right 3.089358e-04	k: 697	n:2430000
Cons ci ratio: 5.379166e-02	ci left: 2.121991e-03	ci right 2.239694e-03	k: 5298	n:2430000
KS ci ratio: 3.508853e-02	ci left: 5.020206e-03	ci right 5.199907e-03	k: 12416	n:2430000
TMPRSS13   2430000 perm   3101 sec   (784 perm/sec)   p_kst 5.109465e-03   p_cons 2.180247e-03   p_joint 2.868313e-04

Joint ci ratio: 1.481408e-01	ci left: 2.656317e-04	ci right 3.085197e-04	k: 699	n:2440000
Cons ci ratio: 5.365004e-02	ci left: 2.124616e-03	ci right 2.242145e-03	k: 5326	n:2440000
KS ci ratio: 3.502093e-02	ci left: 5.019131e-03	ci right 5.198440e-03	k: 12464	n:2440000
TMPRSS13   2440000 perm   3124 sec   (781 perm/sec)   p_kst 5.108197e-03   p_cons 2.182787e-03   p_joint 2.864754e-04

Joint ci ratio: 1.479296e-01	ci left: 2.653336e-04	ci right 3.081070e-04	k: 701	n:2450000
Cons ci ratio: 5.353458e-02	ci left: 2.125206e-03	ci right 2.242506e-03	k: 5349	n:2450000
KS ci ratio: 3.493548e-02	ci left: 5.023325e-03	ci right 5.202338e-03	k: 12525	n:2450000
TMPRSS13   2450000 perm   3148 sec   (778 perm/sec)   p_kst 5.112245e-03   p_cons 2.183265e-03   p_joint 2.861224e-04

Joint ci ratio: 1.478244e-01	ci left: 2.646465e-04	ci right 3.072760e-04	k: 702	n:2460000
Cons ci ratio: 5.339994e-02	ci left: 2.127396e-03	ci right 2.244513e-03	k: 5376	n:2460000
KS ci ratio: 3.486179e-02	ci left: 5.024262e-03	ci right 5.202923e-03	k: 12578	n:2460000
TMPRSS13   2460000 perm   3172 sec   (776 perm/sec)   p_kst 5.113008e-03   p_cons 2.185366e-03   p_joint 2.853659e-04

Joint ci ratio: 1.477195e-01	ci left: 2.639649e-04	ci right 3.064518e-04	k: 703	n:2470000
Cons ci ratio: 5.331578e-02	ci left: 2.125573e-03	ci right 2.242400e-03	k: 5393	n:2470000
KS ci ratio: 3.480380e-02	ci left: 5.020776e-03	ci right 5.199011e-03	k: 12620	n:2470000
TMPRSS13   2470000 perm   3195 sec   (773 perm/sec)   p_kst 5.109312e-03   p_cons 2.183401e-03   p_joint 2.846154e-04

Joint ci ratio: 1.474057e-01	ci left: 2.640656e-04	ci right 3.064704e-04	k: 706	n:2480000
Cons ci ratio: 5.324188e-02	ci left: 2.122970e-03	ci right 2.239487e-03	k: 5408	n:2480000
KS ci ratio: 3.473232e-02	ci left: 5.021317e-03	ci right 5.199197e-03	k: 12672	n:2480000
TMPRSS13   2480000 perm   3218 sec   (771 perm/sec)   p_kst 5.109677e-03   p_cons 2.180645e-03   p_joint 2.846774e-04

Joint ci ratio: 1.469905e-01	ci left: 2.645523e-04	ci right 3.069052e-04	k: 710	n:2490000
Cons ci ratio: 5.313883e-02	ci left: 2.122766e-03	ci right 2.239039e-03	k: 5429	n:2490000
KS ci ratio: 3.466538e-02	ci left: 5.020659e-03	ci right 5.198166e-03	k: 12721	n:2490000
TMPRSS13   2490000 perm   3242 sec   (768 perm/sec)   p_kst 5.108835e-03   p_cons 2.180321e-03   p_joint 2.851406e-04

Joint ci ratio: 1.467842e-01	ci left: 2.642647e-04	ci right 3.065070e-04	k: 712	n:2500000
Cons ci ratio: 5.302176e-02	ci left: 2.123747e-03	ci right 2.239810e-03	k: 5453	n:2500000
KS ci ratio: 3.459883e-02	ci left: 5.020006e-03	ci right 5.197143e-03	k: 12770	n:2500000
TMPRSS13   2500000 perm   3266 sec   (766 perm/sec)   p_kst 5.108000e-03   p_cons 2.181200e-03   p_joint 2.848000e-04

Joint ci ratio: 1.462721e-01	ci left: 2.651309e-04	ci right 3.073508e-04	k: 717	n:2510000
Cons ci ratio: 5.289579e-02	ci left: 2.125508e-03	ci right 2.241383e-03	k: 5479	n:2510000
KS ci ratio: 3.454621e-02	ci left: 5.015410e-03	ci right 5.192110e-03	k: 12809	n:2510000
TMPRSS13   2510000 perm   3290 sec   (763 perm/sec)   p_kst 5.103187e-03   p_cons 2.182869e-03   p_joint 2.856574e-04

Joint ci ratio: 1.459675e-01	ci left: 2.652257e-04	ci right 3.073651e-04	k: 720	n:2520000
Cons ci ratio: 5.274671e-02	ci left: 2.129212e-03	ci right 2.244952e-03	k: 5510	n:2520000
KS ci ratio: 3.446956e-02	ci left: 5.017931e-03	ci right 5.194320e-03	k: 12866	n:2520000
TMPRSS13   2520000 perm   3314 sec   (760 perm/sec)   p_kst 5.105556e-03   p_cons 2.186508e-03   p_joint 2.857143e-04

Joint ci ratio: 1.458664e-01	ci left: 2.645582e-04	ci right 3.065599e-04	k: 721	n:2530000
Cons ci ratio: 5.263697e-02	ci left: 2.129768e-03	ci right 2.245289e-03	k: 5533	n:2530000
KS ci ratio: 3.439209e-02	ci left: 5.020825e-03	ci right 5.196911e-03	k: 12924	n:2530000
TMPRSS13   2530000 perm   3338 sec   (758 perm/sec)   p_kst 5.108300e-03   p_cons 2.186957e-03   p_joint 2.849802e-04

Joint ci ratio: 1.454640e-01	ci left: 2.650341e-04	ci right 3.069852e-04	k: 725	n:2540000
Cons ci ratio: 5.253266e-02	ci left: 2.129930e-03	ci right 2.245225e-03	k: 5555	n:2540000
KS ci ratio: 3.431115e-02	ci left: 5.024868e-03	ci right 5.200673e-03	k: 12985	n:2540000
TMPRSS13   2540000 perm   3363 sec   (755 perm/sec)   p_kst 5.112205e-03   p_cons 2.187008e-03   p_joint 2.854331e-04

Joint ci ratio: 1.453640e-01	ci left: 2.643726e-04	ci right 3.061877e-04	k: 726	n:2550000
Cons ci ratio: 5.245252e-02	ci left: 2.128157e-03	ci right 2.243174e-03	k: 5572	n:2550000
KS ci ratio: 3.425454e-02	ci left: 5.021881e-03	ci right 5.197285e-03	k: 13028	n:2550000
TMPRSS13   2550000 perm   3387 sec   (753 perm/sec)   p_kst 5.109020e-03   p_cons 2.185098e-03   p_joint 2.847059e-04

Joint ci ratio: 1.451645e-01	ci left: 2.640927e-04	ci right 3.058013e-04	k: 728	n:2560000
Cons ci ratio: 5.233992e-02	ci left: 2.129096e-03	ci right 2.243910e-03	k: 5596	n:2560000
KS ci ratio: 3.418375e-02	ci left: 5.023177e-03	ci right 5.198258e-03	k: 13082	n:2560000
TMPRSS13   2560000 perm   3412 sec   (750 perm/sec)   p_kst 5.110156e-03   p_cons 2.185937e-03   p_joint 2.843750e-04

Joint ci ratio: 1.462726e-01	ci left: 2.589410e-04	ci right 3.001754e-04	k: 717	n:2570000
Cons ci ratio: 5.222804e-02	ci left: 2.130028e-03	ci right 2.244639e-03	k: 5620	n:2570000
KS ci ratio: 3.410036e-02	ci left: 5.028322e-03	ci right 5.203146e-03	k: 13146	n:2570000
TMPRSS13   2570000 perm   3436 sec   (748 perm/sec)   p_kst 5.115175e-03   p_cons 2.186770e-03   p_joint 2.789883e-04

Joint ci ratio: 1.461709e-01	ci left: 2.583108e-04	ci right 2.994137e-04	k: 718	n:2580000
Cons ci ratio: 5.215856e-02	ci left: 2.127510e-03	ci right 2.241829e-03	k: 5635	n:2580000
KS ci ratio: 3.402923e-02	ci left: 5.029969e-03	ci right 5.204478e-03	k: 13201	n:2580000
TMPRSS13   2580000 perm   3461 sec   (745 perm/sec)   p_kst 5.116667e-03   p_cons 2.184109e-03   p_joint 2.782946e-04

Joint ci ratio: 1.460694e-01	ci left: 2.576854e-04	ci right 2.986579e-04	k: 719	n:2590000
Cons ci ratio: 5.207089e-02	ci left: 2.126536e-03	ci right 2.240605e-03	k: 5654	n:2590000
KS ci ratio: 3.396369e-02	ci left: 5.030072e-03	ci right 5.204242e-03	k: 13252	n:2590000
TMPRSS13   2590000 perm   3486 sec   (743 perm/sec)   p_kst 5.116602e-03   p_cons 2.183012e-03   p_joint 2.776062e-04

Joint ci ratio: 1.456653e-01	ci left: 2.581766e-04	ci right 2.991037e-04	k: 723	n:2600000
Cons ci ratio: 5.197449e-02	ci left: 2.126329e-03	ci right 2.240169e-03	k: 5675	n:2600000
KS ci ratio: 3.390366e-02	ci left: 5.028649e-03	ci right 5.202456e-03	k: 13299	n:2600000
TMPRSS13   2600000 perm   3511 sec   (741 perm/sec)   p_kst 5.115000e-03   p_cons 2.182692e-03   p_joint 2.780769e-04

Joint ci ratio: 1.413380e-01	ci left: 2.738101e-04	ci right 3.158174e-04	k: 768	n:2610000
Cons ci ratio: 5.191059e-02	ci left: 2.123476e-03	ci right 2.237020e-03	k: 5689	n:2610000
KS ci ratio: 3.383502e-02	ci left: 5.029897e-03	ci right 5.203388e-03	k: 13353	n:2610000
TMPRSS13   2610000 perm   3535 sec   (738 perm/sec)   p_kst 5.116092e-03   p_cons 2.179693e-03   p_joint 2.942529e-04

Joint ci ratio: 1.412462e-01	ci left: 2.731332e-04	ci right 3.150072e-04	k: 769	n:2620000
Cons ci ratio: 5.179235e-02	ci left: 2.125167e-03	ci right 2.238534e-03	k: 5715	n:2620000
KS ci ratio: 3.377946e-02	ci left: 5.027350e-03	ci right 5.200464e-03	k: 13397	n:2620000
TMPRSS13   2620000 perm   3562 sec   (736 perm/sec)   p_kst 5.113359e-03   p_cons 2.181298e-03   p_joint 2.935115e-04

Joint ci ratio: 1.410632e-01	ci left: 2.728283e-04	ci right 3.145967e-04	k: 771	n:2630000
Cons ci ratio: 5.165238e-02	ci left: 2.128721e-03	ci right 2.241962e-03	k: 5746	n:2630000
KS ci ratio: 3.372670e-02	ci left: 5.024070e-03	ci right 5.196795e-03	k: 13439	n:2630000
TMPRSS13   2630000 perm   3587 sec   (733 perm/sec)   p_kst 5.109886e-03   p_cons 2.184791e-03   p_joint 2.931559e-04

Joint ci ratio: 1.405181e-01	ci left: 2.739875e-04	ci right 3.157578e-04	k: 777	n:2640000
Cons ci ratio: 5.155828e-02	ci left: 2.128509e-03	ci right 2.241526e-03	k: 5767	n:2640000
KS ci ratio: 3.367042e-02	ci left: 5.021941e-03	ci right 5.194299e-03	k: 13484	n:2640000
TMPRSS13   2640000 perm   3612 sec   (731 perm/sec)   p_kst 5.107576e-03   p_cons 2.184470e-03   p_joint 2.943182e-04

Joint ci ratio: 1.403378e-01	ci left: 2.736818e-04	ci right 3.153475e-04	k: 779	n:2650000
Cons ci ratio: 5.144243e-02	ci left: 2.130162e-03	ci right 2.243005e-03	k: 5793	n:2650000
KS ci ratio: 3.361317e-02	ci left: 5.020202e-03	ci right 5.192202e-03	k: 13530	n:2650000
TMPRSS13   2650000 perm   3638 sec   (728 perm/sec)   p_kst 5.105660e-03   p_cons 2.186038e-03   p_joint 2.939623e-04

Joint ci ratio: 1.406086e-01	ci left: 2.715647e-04	ci right 3.129945e-04	k: 776	n:2660000
Cons ci ratio: 5.132735e-02	ci left: 2.131803e-03	ci right 2.244473e-03	k: 5819	n:2660000
KS ci ratio: 3.354876e-02	ci left: 5.020714e-03	ci right 5.192396e-03	k: 13582	n:2660000
TMPRSS13   2660000 perm   3663 sec   (726 perm/sec)   p_kst 5.106015e-03   p_cons 2.187594e-03   p_joint 2.917293e-04

Joint ci ratio: 1.398012e-01	ci left: 2.738002e-04	ci right 3.153112e-04	k: 785	n:2670000
Cons ci ratio: 5.123501e-02	ci left: 2.131583e-03	ci right 2.244033e-03	k: 5840	n:2670000
KS ci ratio: 3.347362e-02	ci left: 5.024565e-03	ci right 5.195986e-03	k: 13643	n:2670000
TMPRSS13   2670000 perm   3688 sec   (724 perm/sec)   p_kst 5.109738e-03   p_cons 2.187266e-03   p_joint 2.940075e-04

Joint ci ratio: 1.397124e-01	ci left: 2.731386e-04	ci right 3.145208e-04	k: 786	n:2680000
Cons ci ratio: 5.114316e-02	ci left: 2.131365e-03	ci right 2.243596e-03	k: 5861	n:2680000
KS ci ratio: 3.341859e-02	ci left: 5.022467e-03	ci right 5.193530e-03	k: 13688	n:2680000
TMPRSS13   2680000 perm   3714 sec   (722 perm/sec)   p_kst 5.107463e-03   p_cons 2.186940e-03   p_joint 2.932836e-04

Joint ci ratio: 1.402482e-01	ci left: 2.699708e-04	ci right 3.110431e-04	k: 780	n:2690000
Cons ci ratio: 5.099537e-02	ci left: 2.135920e-03	ci right 2.248056e-03	k: 5895	n:2690000
KS ci ratio: 3.335895e-02	ci left: 5.021860e-03	ci right 5.192591e-03	k: 13737	n:2690000
TMPRSS13   2690000 perm   3739 sec   (719 perm/sec)   p_kst 5.106691e-03   p_cons 2.191450e-03   p_joint 2.899628e-04

Joint ci ratio: 1.400690e-01	ci left: 2.696857e-04	ci right 3.106578e-04	k: 782	n:2700000
Cons ci ratio: 5.087896e-02	ci left: 2.137882e-03	ci right 2.249857e-03	k: 5922	n:2700000
KS ci ratio: 3.328993e-02	ci left: 5.024196e-03	ci right 5.194646e-03	k: 13794	n:2700000
TMPRSS13   2700000 perm   3765 sec   (717 perm/sec)   p_kst 5.108889e-03   p_cons 2.193333e-03   p_joint 2.896296e-04

Joint ci ratio: 1.397126e-01	ci left: 2.701149e-04	ci right 3.110391e-04	k: 786	n:2710000
Cons ci ratio: 5.075907e-02	ci left: 2.140194e-03	ci right 2.252018e-03	k: 5950	n:2710000
KS ci ratio: 3.323097e-02	ci left: 5.023587e-03	ci right 5.193709e-03	k: 13843	n:2710000
TMPRSS13   2710000 perm   3791 sec   (715 perm/sec)   p_kst 5.108118e-03   p_cons 2.195572e-03   p_joint 2.900369e-04

Joint ci ratio: 1.395354e-01	ci left: 2.698314e-04	ci right 3.106565e-04	k: 788	n:2720000
Cons ci ratio: 5.065276e-02	ci left: 2.141400e-03	ci right 2.253046e-03	k: 5975	n:2720000
KS ci ratio: 3.317953e-02	ci left: 5.020796e-03	ci right 5.190555e-03	k: 13886	n:2720000
TMPRSS13   2720000 perm   3816 sec   (713 perm/sec)   p_kst 5.105147e-03   p_cons 2.196691e-03   p_joint 2.897059e-04

Joint ci ratio: 1.429280e-01	ci left: 2.557686e-04	ci right 2.954871e-04	k: 751	n:2730000
Cons ci ratio: 5.058091e-02	ci left: 2.139704e-03	ci right 2.251099e-03	k: 5992	n:2730000
KS ci ratio: 3.311758e-02	ci left: 5.021294e-03	ci right 5.190747e-03	k: 13938	n:2730000
TMPRSS13   2730000 perm   3842 sec   (711 perm/sec)   p_kst 5.105495e-03   p_cons 2.194872e-03   p_joint 2.750916e-04

Joint ci ratio: 1.427383e-01	ci left: 2.555390e-04	ci right 2.951647e-04	k: 753	n:2740000
Cons ci ratio: 5.044212e-02	ci left: 2.143787e-03	ci right 2.255079e-03	k: 6025	n:2740000
KS ci ratio: 3.305598e-02	ci left: 5.021790e-03	ci right 5.190938e-03	k: 13990	n:2740000
TMPRSS13   2740000 perm   3868 sec   (708 perm/sec)   p_kst 5.105839e-03   p_cons 2.198905e-03   p_joint 2.748175e-04

Joint ci ratio: 1.425494e-01	ci left: 2.553111e-04	ci right 2.948446e-04	k: 755	n:2750000
Cons ci ratio: 5.034195e-02	ci left: 2.144609e-03	ci right 2.255716e-03	k: 6049	n:2750000
KS ci ratio: 3.299707e-02	ci left: 5.021560e-03	ci right 5.190394e-03	k: 14040	n:2750000
TMPRSS13   2750000 perm   3894 sec   (706 perm/sec)   p_kst 5.105455e-03   p_cons 2.199636e-03   p_joint 2.745455e-04

Joint ci ratio: 1.422674e-01	ci left: 2.554343e-04	ci right 2.949020e-04	k: 758	n:2760000
Cons ci ratio: 5.024238e-02	ci left: 2.145425e-03	ci right 2.256348e-03	k: 6073	n:2760000
KS ci ratio: 3.293261e-02	ci left: 5.023129e-03	ci right 5.191680e-03	k: 14095	n:2760000
TMPRSS13   2760000 perm   3920 sec   (704 perm/sec)   p_kst 5.106884e-03   p_cons 2.200362e-03   p_joint 2.746377e-04

Joint ci ratio: 1.421738e-01	ci left: 2.548603e-04	ci right 2.942112e-04	k: 759	n:2770000
Cons ci ratio: 5.013515e-02	ci left: 2.146948e-03	ci right 2.257707e-03	k: 6099	n:2770000
KS ci ratio: 3.288021e-02	ci left: 5.021107e-03	ci right 5.189316e-03	k: 14140	n:2770000
TMPRSS13   2770000 perm   3947 sec   (702 perm/sec)   p_kst 5.104693e-03   p_cons 2.201805e-03   p_joint 2.740072e-04

Joint ci ratio: 1.419871e-01	ci left: 2.546374e-04	ci right 2.938979e-04	k: 761	n:2780000
Cons ci ratio: 5.007779e-02	ci left: 2.144198e-03	ci right 2.254685e-03	k: 6113	n:2780000
KS ci ratio: 3.282573e-02	ci left: 5.019813e-03	ci right 5.187695e-03	k: 14187	n:2780000
TMPRSS13   2780000 perm   3973 sec   (700 perm/sec)   p_kst 5.103237e-03   p_cons 2.198921e-03   p_joint 2.737410e-04

Joint ci ratio: 1.418012e-01	ci left: 2.544161e-04	ci right 2.935868e-04	k: 763	n:2790000
Cons ci ratio: 4.998386e-02	ci left: 2.144653e-03	ci right 2.254950e-03	k: 6136	n:2790000
KS ci ratio: 3.275071e-02	ci left: 5.024928e-03	ci right 5.192589e-03	k: 14252	n:2790000
TMPRSS13   2790000 perm   3999 sec   (698 perm/sec)   p_kst 5.108244e-03   p_cons 2.199283e-03   p_joint 2.734767e-04

Joint ci ratio: 1.415236e-01	ci left: 2.545409e-04	ci right 2.936476e-04	k: 766	n:2800000
Cons ci ratio: 4.988233e-02	ci left: 2.145811e-03	ci right 2.255937e-03	k: 6161	n:2800000
KS ci ratio: 3.268423e-02	ci left: 5.027527e-03	ci right 5.194928e-03	k: 14310	n:2800000
TMPRSS13   2800000 perm   4026 sec   (696 perm/sec)   p_kst 5.110714e-03   p_cons 2.200357e-03   p_joint 2.735714e-04

Joint ci ratio: 1.411560e-01	ci left: 2.550082e-04	ci right 2.940764e-04	k: 770	n:2810000
Cons ci ratio: 4.978142e-02	ci left: 2.146961e-03	ci right 2.256916e-03	k: 6186	n:2810000
KS ci ratio: 3.261816e-02	ci left: 5.030107e-03	ci right 5.197250e-03	k: 14368	n:2810000
TMPRSS13   2810000 perm   4053 sec   (693 perm/sec)   p_kst 5.113167e-03   p_cons 2.201423e-03   p_joint 2.740214e-04

Joint ci ratio: 1.407004e-01	ci left: 2.558145e-04	ci right 2.948691e-04	k: 775	n:2820000
Cons ci ratio: 4.965709e-02	ci left: 2.150204e-03	ci right 2.260042e-03	k: 6217	n:2820000
KS ci ratio: 3.255816e-02	ci left: 5.030911e-03	ci right 5.197767e-03	k: 14421	n:2820000
TMPRSS13   2820000 perm   4080 sec   (691 perm/sec)   p_kst 5.113830e-03   p_cons 2.204610e-03   p_joint 2.748227e-04

Joint ci ratio: 1.405195e-01	ci left: 2.555924e-04	ci right 2.945587e-04	k: 777	n:2830000
Cons ci ratio: 4.958541e-02	ci left: 2.148887e-03	ci right 2.258496e-03	k: 6235	n:2830000
KS ci ratio: 3.251656e-02	ci left: 5.026102e-03	ci right 5.192581e-03	k: 14458	n:2830000
TMPRSS13   2830000 perm   4107 sec   (689 perm/sec)   p_kst 5.108834e-03   p_cons 2.203180e-03   p_joint 2.745583e-04

Joint ci ratio: 1.404293e-01	ci left: 2.550322e-04	ci right 2.938860e-04	k: 778	n:2840000
Cons ci ratio: 4.948233e-02	ci left: 2.150362e-03	ci right 2.259812e-03	k: 6261	n:2840000
KS ci ratio: 3.247624e-02	ci left: 5.020977e-03	ci right 5.187077e-03	k: 14494	n:2840000
TMPRSS13   2840000 perm   4134 sec   (687 perm/sec)   p_kst 5.103521e-03   p_cons 2.204577e-03   p_joint 2.739437e-04

Joint ci ratio: 1.397136e-01	ci left: 2.568460e-04	ci right 2.957601e-04	k: 786	n:2850000
Cons ci ratio: 4.940746e-02	ci left: 2.149401e-03	ci right 2.258632e-03	k: 6280	n:2850000
KS ci ratio: 3.242150e-02	ci left: 5.020413e-03	ci right 5.186209e-03	k: 14543	n:2850000
TMPRSS13   2850000 perm   4161 sec   (685 perm/sec)   p_kst 5.102807e-03   p_cons 2.203509e-03   p_joint 2.757895e-04

Joint ci ratio: 1.394481e-01	ci left: 2.569602e-04	ci right 2.958116e-04	k: 789	n:2860000
Cons ci ratio: 4.933685e-02	ci left: 2.148102e-03	ci right 2.257106e-03	k: 6298	n:2860000
KS ci ratio: 3.237484e-02	ci left: 5.017425e-03	ci right 5.182880e-03	k: 14585	n:2860000
TMPRSS13   2860000 perm   4189 sec   (683 perm/sec)   p_kst 5.099650e-03   p_cons 2.202098e-03   p_joint 2.758741e-04

Joint ci ratio: 1.390963e-01	ci left: 2.574101e-04	ci right 2.962231e-04	k: 793	n:2870000
Cons ci ratio: 4.927045e-02	ci left: 2.146468e-03	ci right 2.255238e-03	k: 6315	n:2870000
KS ci ratio: 3.232949e-02	ci left: 5.014113e-03	ci right 5.179222e-03	k: 14626	n:2870000
TMPRSS13   2870000 perm   4218 sec   (680 perm/sec)   p_kst 5.096167e-03   p_cons 2.200348e-03   p_joint 2.763066e-04

Joint ci ratio: 1.387472e-01	ci left: 2.578569e-04	ci right 2.966317e-04	k: 797	n:2880000
Cons ci ratio: 4.917320e-02	ci left: 2.147588e-03	ci right 2.256194e-03	k: 6340	n:2880000
KS ci ratio: 3.228212e-02	ci left: 5.011513e-03	ci right 5.176290e-03	k: 14669	n:2880000
TMPRSS13   2880000 perm   4246 sec   (678 perm/sec)   p_kst 5.093403e-03   p_cons 2.201389e-03   p_joint 2.767361e-04

Joint ci ratio: 1.385737e-01	ci left: 2.576327e-04	ci right 2.963213e-04	k: 799	n:2890000
Cons ci ratio: 4.908812e-02	ci left: 2.147676e-03	ci right 2.256093e-03	k: 6362	n:2890000
KS ci ratio: 3.223385e-02	ci left: 5.009274e-03	ci right 5.173727e-03	k: 14713	n:2890000
TMPRSS13   2890000 perm   4274 sec   (676 perm/sec)   p_kst 5.091003e-03   p_cons 2.201384e-03   p_joint 2.764706e-04

Joint ci ratio: 1.384008e-01	ci left: 2.574101e-04	ci right 2.960131e-04	k: 801	n:2900000
Cons ci ratio: 4.900348e-02	ci left: 2.147764e-03	ci right 2.255993e-03	k: 6384	n:2900000
KS ci ratio: 3.218580e-02	ci left: 5.007051e-03	ci right 5.171181e-03	k: 14757	n:2900000
TMPRSS13   2900000 perm   4303 sec   (674 perm/sec)   p_kst 5.088621e-03   p_cons 2.201379e-03   p_joint 2.762069e-04

Joint ci ratio: 1.380570e-01	ci left: 2.578526e-04	ci right 2.964179e-04	k: 805	n:2910000
Cons ci ratio: 4.891927e-02	ci left: 2.147851e-03	ci right 2.255893e-03	k: 6406	n:2910000
KS ci ratio: 3.213142e-02	ci left: 5.006888e-03	ci right 5.170731e-03	k: 14807	n:2910000
TMPRSS13   2910000 perm   4331 sec   (672 perm/sec)   p_kst 5.088316e-03   p_cons 2.201375e-03   p_joint 2.766323e-04

Joint ci ratio: 1.376307e-01	ci left: 2.586228e-04	ci right 2.971741e-04	k: 810	n:2920000
Cons ci ratio: 4.882789e-02	ci left: 2.148614e-03	ci right 2.256487e-03	k: 6430	n:2920000
KS ci ratio: 3.207190e-02	ci left: 5.008426e-03	ci right 5.172010e-03	k: 14862	n:2920000
TMPRSS13   2920000 perm   4360 sec   (670 perm/sec)   p_kst 5.089726e-03   p_cons 2.202055e-03   p_joint 2.773973e-04

Joint ci ratio: 1.375459e-01	ci left: 2.580697e-04	ci right 2.965129e-04	k: 811	n:2930000
Cons ci ratio: 4.876731e-02	ci left: 2.146675e-03	ci right 2.254313e-03	k: 6446	n:2930000
KS ci ratio: 3.202241e-02	ci left: 5.006906e-03	ci right 5.170183e-03	k: 14908	n:2930000
TMPRSS13   2930000 perm   4389 sec   (668 perm/sec)   p_kst 5.088055e-03   p_cons 2.200000e-03   p_joint 2.767918e-04

Joint ci ratio: 1.227186e-01	ci left: 3.256452e-04	ci right 3.685463e-04	k: 1019	n:2940000
Cons ci ratio: 4.867678e-02	ci left: 2.147437e-03	ci right 2.254908e-03	k: 6470	n:2940000
KS ci ratio: 3.196778e-02	ci left: 5.007084e-03	ci right 5.170084e-03	k: 14959	n:2940000
TMPRSS13   2940000 perm   4417 sec   (666 perm/sec)   p_kst 5.088095e-03   p_cons 2.200680e-03   p_joint 3.465986e-04

Joint ci ratio: 1.225985e-01	ci left: 3.251984e-04	ci right 3.679957e-04	k: 1021	n:2950000
Cons ci ratio: 4.857925e-02	ci left: 2.148864e-03	ci right 2.256185e-03	k: 6496	n:2950000
KS ci ratio: 3.191129e-02	ci left: 5.007934e-03	ci right 5.170667e-03	k: 15012	n:2950000
TMPRSS13   2950000 perm   4444 sec   (664 perm/sec)   p_kst 5.088814e-03   p_cons 2.202034e-03   p_joint 3.461017e-04

Joint ci ratio: 1.223593e-01	ci left: 3.254098e-04	ci right 3.681452e-04	k: 1025	n:2960000
Cons ci ratio: 4.848230e-02	ci left: 2.150281e-03	ci right 2.257453e-03	k: 6522	n:2960000
KS ci ratio: 3.184448e-02	ci left: 5.012129e-03	ci right 5.174652e-03	k: 15075	n:2960000
TMPRSS13   2960000 perm   4472 sec   (662 perm/sec)   p_kst 5.092905e-03   p_cons 2.203378e-03   p_joint 3.462838e-04

Joint ci ratio: 1.220622e-01	ci left: 3.259461e-04	ci right 3.686406e-04	k: 1030	n:2970000
Cons ci ratio: 4.838594e-02	ci left: 2.151690e-03	ci right 2.258712e-03	k: 6548	n:2970000
KS ci ratio: 3.178653e-02	ci left: 5.013625e-03	ci right 5.175895e-03	k: 15130	n:2970000
TMPRSS13   2970000 perm   4500 sec   (660 perm/sec)   p_kst 5.094276e-03   p_cons 2.204714e-03   p_joint 3.468013e-04

Joint ci ratio: 1.215913e-01	ci left: 3.274551e-04	ci right 3.701699e-04	k: 1038	n:2980000
Cons ci ratio: 4.831592e-02	ci left: 2.150768e-03	ci right 2.257586e-03	k: 6567	n:2980000
KS ci ratio: 3.172154e-02	ci left: 5.017441e-03	ci right 5.179496e-03	k: 15192	n:2980000
TMPRSS13   2980000 perm   4529 sec   (658 perm/sec)   p_kst 5.097987e-03   p_cons 2.203691e-03   p_joint 3.483221e-04

Joint ci ratio: 1.214161e-01	ci left: 3.273328e-04	ci right 3.699657e-04	k: 1041	n:2990000
Cons ci ratio: 4.821688e-02	ci left: 2.152496e-03	ci right 2.259174e-03	k: 6594	n:2990000
KS ci ratio: 3.167052e-02	ci left: 5.016918e-03	ci right 5.178691e-03	k: 15241	n:2990000
TMPRSS13   2990000 perm   4558 sec   (656 perm/sec)   p_kst 5.097324e-03   p_cons 2.205351e-03   p_joint 3.481605e-04

Joint ci ratio: 1.213580e-01	ci left: 3.265649e-04	ci right 3.690759e-04	k: 1042	n:3000000
Cons ci ratio: 4.814030e-02	ci left: 2.152237e-03	ci right 2.258728e-03	k: 6615	n:3000000
KS ci ratio: 3.161767e-02	ci left: 5.017061e-03	ci right 5.178564e-03	k: 15292	n:3000000
TMPRSS13   3000000 perm   4587 sec   (654 perm/sec)   p_kst 5.097333e-03   p_cons 2.205000e-03   p_joint 3.473333e-04

Joint ci ratio: 1.212418e-01	ci left: 3.261243e-04	ci right 3.685344e-04	k: 1044	n:3010000
Cons ci ratio: 4.802784e-02	ci left: 2.155262e-03	ci right 2.261647e-03	k: 6646	n:3010000
KS ci ratio: 3.156095e-02	ci left: 5.018521e-03	ci right 5.179776e-03	k: 15347	n:3010000
TMPRSS13   3010000 perm   4616 sec   (652 perm/sec)   p_kst 5.098671e-03   p_cons 2.207973e-03   p_joint 3.468439e-04

Joint ci ratio: 1.211260e-01	ci left: 3.256866e-04	ci right 3.679964e-04	k: 1046	n:3020000
Cons ci ratio: 4.798102e-02	ci left: 2.152378e-03	ci right 2.258514e-03	k: 6659	n:3020000
KS ci ratio: 3.150864e-02	ci left: 5.018657e-03	ci right 5.179645e-03	k: 15398	n:3020000
TMPRSS13   3020000 perm   4645 sec   (650 perm/sec)   p_kst 5.098675e-03   p_cons 2.204967e-03   p_joint 3.463576e-04

Joint ci ratio: 1.225391e-01	ci left: 3.169322e-04	ci right 3.586199e-04	k: 1022	n:3030000
Cons ci ratio: 4.790556e-02	ci left: 2.152122e-03	ci right 2.258074e-03	k: 6680	n:3030000
KS ci ratio: 3.144534e-02	ci left: 5.022395e-03	ci right 5.183173e-03	k: 15460	n:3030000
TMPRSS13   3030000 perm   4675 sec   (648 perm/sec)   p_kst 5.102310e-03   p_cons 2.204620e-03   p_joint 3.372937e-04

Joint ci ratio: 1.223003e-01	ci left: 3.171651e-04	ci right 3.587963e-04	k: 1026	n:3040000
Cons ci ratio: 4.781616e-02	ci left: 2.153168e-03	ci right 2.258968e-03	k: 6705	n:3040000
KS ci ratio: 3.139666e-02	ci left: 5.021540e-03	ci right 5.182037e-03	k: 15508	n:3040000
TMPRSS13   3040000 perm   4705 sec   (646 perm/sec)   p_kst 5.101316e-03   p_cons 2.205592e-03   p_joint 3.375000e-04

Joint ci ratio: 1.267620e-01	ci left: 2.935713e-04	ci right 3.336170e-04	k: 955	n:3050000
Cons ci ratio: 4.773081e-02	ci left: 2.153883e-03	ci right 2.259525e-03	k: 6729	n:3050000
KS ci ratio: 3.135529e-02	ci left: 5.018413e-03	ci right 5.178595e-03	k: 15549	n:3050000
TMPRSS13   3050000 perm   4734 sec   (644 perm/sec)   p_kst 5.098033e-03   p_cons 2.206230e-03   p_joint 3.131148e-04

Joint ci ratio: 1.264976e-01	ci left: 2.938777e-04	ci right 3.338753e-04	k: 959	n:3060000
Cons ci ratio: 4.766006e-02	ci left: 2.153302e-03	ci right 2.258754e-03	k: 6749	n:3060000
KS ci ratio: 3.130501e-02	ci left: 5.018225e-03	ci right 5.178139e-03	k: 15599	n:3060000
TMPRSS13   3060000 perm   4764 sec   (642 perm/sec)   p_kst 5.097712e-03   p_cons 2.205556e-03   p_joint 3.133987e-04

Joint ci ratio: 1.263660e-01	ci left: 2.935513e-04	ci right 3.334598e-04	k: 961	n:3070000
Cons ci ratio: 4.759667e-02	ci left: 2.152082e-03	ci right 2.257330e-03	k: 6767	n:3070000
KS ci ratio: 3.125296e-02	ci left: 5.018684e-03	ci right 5.178343e-03	k: 15651	n:3070000
TMPRSS13   3070000 perm   4793 sec   (641 perm/sec)   p_kst 5.098046e-03   p_cons 2.204235e-03   p_joint 3.130293e-04

Joint ci ratio: 1.261695e-01	ci left: 2.935414e-04	ci right 3.333819e-04	k: 964	n:3080000
Cons ci ratio: 4.754758e-02	ci left: 2.149586e-03	ci right 2.254600e-03	k: 6781	n:3080000
KS ci ratio: 3.120516e-02	ci left: 5.017852e-03	ci right 5.177236e-03	k: 15699	n:3080000
TMPRSS13   3080000 perm   4822 sec   (639 perm/sec)   p_kst 5.097078e-03   p_cons 2.201623e-03   p_joint 3.129870e-04

Joint ci ratio: 1.259738e-01	ci left: 2.935317e-04	ci right 3.333045e-04	k: 967	n:3090000
Cons ci ratio: 4.748114e-02	ci left: 2.148705e-03	ci right 2.253526e-03	k: 6800	n:3090000
KS ci ratio: 3.115957e-02	ci left: 5.016384e-03	ci right 5.175484e-03	k: 15745	n:3090000
TMPRSS13   3090000 perm   4853 sec   (637 perm/sec)   p_kst 5.095469e-03   p_cons 2.200647e-03   p_joint 3.129450e-04

Joint ci ratio: 1.254564e-01	ci left: 2.950843e-04	ci right 3.348910e-04	k: 975	n:3100000
Cons ci ratio: 4.738366e-02	ci left: 2.150699e-03	ci right 2.255396e-03	k: 6828	n:3100000
KS ci ratio: 3.111517e-02	ci left: 5.014605e-03	ci right 5.173418e-03	k: 15790	n:3100000
TMPRSS13   3100000 perm   4885 sec   (635 perm/sec)   p_kst 5.093548e-03   p_cons 2.202581e-03   p_joint 3.145161e-04

Joint ci ratio: 1.252640e-01	ci left: 2.950699e-04	ci right 3.348091e-04	k: 978	n:3110000
Cons ci ratio: 4.733869e-02	ci left: 2.147914e-03	ci right 2.252373e-03	k: 6841	n:3110000
KS ci ratio: 3.106505e-02	ci left: 5.014752e-03	ci right 5.173310e-03	k: 15841	n:3110000
TMPRSS13   3110000 perm   4918 sec   (632 perm/sec)   p_kst 5.093569e-03   p_cons 2.199678e-03   p_joint 3.144695e-04

Joint ci ratio: 1.250725e-01	ci left: 2.950556e-04	ci right 3.347276e-04	k: 981	n:3120000
Cons ci ratio: 4.726967e-02	ci left: 2.147364e-03	ci right 2.251640e-03	k: 6861	n:3120000
KS ci ratio: 3.102007e-02	ci left: 5.013309e-03	ci right 5.171587e-03	k: 15887	n:3120000
TMPRSS13   3120000 perm   4950 sec   (630 perm/sec)   p_kst 5.091987e-03   p_cons 2.199038e-03   p_joint 3.144231e-04

Joint ci ratio: 1.248185e-01	ci left: 2.953509e-04	ci right 3.349761e-04	k: 985	n:3130000
Cons ci ratio: 4.721126e-02	ci left: 2.145870e-03	ci right 2.249942e-03	k: 6878	n:3130000
KS ci ratio: 3.097138e-02	ci left: 5.013142e-03	ci right 5.171162e-03	k: 15937	n:3130000
TMPRSS13   3130000 perm   4981 sec   (628 perm/sec)   p_kst 5.091693e-03   p_cons 2.197444e-03   p_joint 3.146965e-04

Joint ci ratio: 1.023920e-01	ci left: 4.426672e-04	ci right 4.907459e-04	k: 1464	n:3140000
Cons ci ratio: 4.712226e-02	ci left: 2.147219e-03	ci right 2.251155e-03	k: 6904	n:3140000
KS ci ratio: 3.092875e-02	ci left: 5.011081e-03	ci right 5.168815e-03	k: 15981	n:3140000
TMPRSS13   3140000 perm   5013 sec   (626 perm/sec)   p_kst 5.089490e-03   p_cons 2.198726e-03   p_joint 4.662420e-04

Joint ci ratio: 1.020788e-01	ci left: 4.440461e-04	ci right 4.921181e-04	k: 1473	n:3150000
Cons ci ratio: 4.703036e-02	ci left: 2.148873e-03	ci right 2.252680e-03	k: 6931	n:3150000
KS ci ratio: 3.087371e-02	ci left: 5.013128e-03	ci right 5.170641e-03	k: 16038	n:3150000
TMPRSS13   3150000 perm   5044 sec   (624 perm/sec)   p_kst 5.091429e-03   p_cons 2.200317e-03   p_joint 4.676190e-04

Joint ci ratio: 1.018717e-01	ci left: 4.444912e-04	ci right 4.925079e-04	k: 1479	n:3160000
Cons ci ratio: 4.695929e-02	ci left: 2.148640e-03	ci right 2.252275e-03	k: 6952	n:3160000
KS ci ratio: 3.083245e-02	ci left: 5.010767e-03	ci right 5.167991e-03	k: 16081	n:3160000
TMPRSS13   3160000 perm   5078 sec   (622 perm/sec)   p_kst 5.088924e-03   p_cons 2.200000e-03   p_joint 4.680380e-04

Joint ci ratio: 1.018029e-01	ci left: 4.437038e-04	ci right 4.916012e-04	k: 1481	n:3170000
Cons ci ratio: 4.689529e-02	ci left: 2.147786e-03	ci right 2.251234e-03	k: 6971	n:3170000
KS ci ratio: 3.078559e-02	ci left: 5.010298e-03	ci right 5.167264e-03	k: 16130	n:3170000
TMPRSS13   3170000 perm   5109 sec   (620 perm/sec)   p_kst 5.088328e-03   p_cons 2.199054e-03   p_joint 4.671924e-04

Joint ci ratio: 1.025324e-01	ci left: 4.358734e-04	ci right 4.832830e-04	k: 1460	n:3180000
Cons ci ratio: 4.680471e-02	ci left: 2.149423e-03	ci right 2.252745e-03	k: 6998	n:3180000
KS ci ratio: 3.074182e-02	ci left: 5.008897e-03	ci right 5.165592e-03	k: 16176	n:3180000
TMPRSS13   3180000 perm   5143 sec   (618 perm/sec)   p_kst 5.086792e-03   p_cons 2.200629e-03   p_joint 4.591195e-04

Joint ci ratio: 1.023574e-01	ci left: 4.360343e-04	ci right 4.833755e-04	k: 1465	n:3190000
Cons ci ratio: 4.672465e-02	ci left: 2.150120e-03	ci right 2.253294e-03	k: 7022	n:3190000
KS ci ratio: 3.070108e-02	ci left: 5.006571e-03	ci right 5.162982e-03	k: 16219	n:3190000
TMPRSS13   3190000 perm   5174 sec   (617 perm/sec)   p_kst 5.084326e-03   p_cons 2.201254e-03   p_joint 4.592476e-04

Joint ci ratio: 1.022528e-01	ci left: 4.355852e-04	ci right 4.828264e-04	k: 1468	n:3200000
Cons ci ratio: 4.664169e-02	ci left: 2.151123e-03	ci right 2.254157e-03	k: 7047	n:3200000
KS ci ratio: 3.064914e-02	ci left: 5.007981e-03	ci right 5.164167e-03	k: 16274	n:3200000
TMPRSS13   3200000 perm   5209 sec   (614 perm/sec)   p_kst 5.085625e-03   p_cons 2.202188e-03   p_joint 4.587500e-04

Joint ci ratio: 1.020446e-01	ci left: 4.360496e-04	ci right 4.832392e-04	k: 1474	n:3210000
Cons ci ratio: 4.658558e-02	ci left: 2.149655e-03	ci right 2.252492e-03	k: 7064	n:3210000
KS ci ratio: 3.061065e-02	ci left: 5.005054e-03	ci right 5.160950e-03	k: 16315	n:3210000
TMPRSS13   3210000 perm   5243 sec   (612 perm/sec)   p_kst 5.082555e-03   p_cons 2.200623e-03   p_joint 4.591900e-04

Joint ci ratio: 1.091623e-01	ci left: 3.784547e-04	ci right 4.224518e-04	k: 1288	n:3220000
Cons ci ratio: 4.652308e-02	ci left: 2.148811e-03	ci right 2.251466e-03	k: 7083	n:3220000
KS ci ratio: 3.056762e-02	ci left: 5.003687e-03	ci right 5.159317e-03	k: 16361	n:3220000
TMPRSS13   3220000 perm   5279 sec   (610 perm/sec)   p_kst 5.081056e-03   p_cons 2.199689e-03   p_joint 4.000000e-04

Joint ci ratio: 1.091623e-01	ci left: 3.772830e-04	ci right 4.211440e-04	k: 1288	n:3230000
Cons ci ratio: 4.648052e-02	ci left: 2.146137e-03	ci right 2.248567e-03	k: 7096	n:3230000
KS ci ratio: 3.051729e-02	ci left: 5.004786e-03	ci right 5.160190e-03	k: 16415	n:3230000
TMPRSS13   3230000 perm   5311 sec   (608 perm/sec)   p_kst 5.082043e-03   p_cons 2.196904e-03   p_joint 3.987616e-04

Joint ci ratio: 1.091201e-01	ci left: 3.764188e-04	ci right 4.201612e-04	k: 1289	n:3240000
Cons ci ratio: 4.640864e-02	ci left: 2.146224e-03	ci right 2.248496e-03	k: 7118	n:3240000
KS ci ratio: 3.047836e-02	ci left: 5.002204e-03	ci right 5.157325e-03	k: 16457	n:3240000
TMPRSS13   3240000 perm   5343 sec   (606 perm/sec)   p_kst 5.079321e-03   p_cons 2.196914e-03   p_joint 3.978395e-04

Joint ci ratio: 1.089513e-01	ci left: 3.764578e-04	ci right 4.201327e-04	k: 1293	n:3250000
Cons ci ratio: 4.634035e-02	ci left: 2.146007e-03	ci right 2.248114e-03	k: 7139	n:3250000
KS ci ratio: 3.044052e-02	ci left: 4.999331e-03	ci right 5.154168e-03	k: 16498	n:3250000
TMPRSS13   3250000 perm   5375 sec   (605 perm/sec)   p_kst 5.076308e-03   p_cons 2.196615e-03   p_joint 3.978462e-04

Joint ci ratio: 1.088252e-01	ci left: 3.761982e-04	ci right 4.197893e-04	k: 1296	n:3260000
Cons ci ratio: 4.629180e-02	ci left: 2.143972e-03	ci right 2.245873e-03	k: 7154	n:3260000
KS ci ratio: 3.039635e-02	ci left: 4.998608e-03	ci right 5.153193e-03	k: 16546	n:3260000
TMPRSS13   3260000 perm   5408 sec   (603 perm/sec)   p_kst 5.075460e-03   p_cons 2.194479e-03   p_joint 3.975460e-04

Joint ci ratio: 1.086996e-01	ci left: 3.759402e-04	ci right 4.194479e-04	k: 1299	n:3270000
Cons ci ratio: 4.623048e-02	ci left: 2.143159e-03	ci right 2.244882e-03	k: 7173	n:3270000
KS ci ratio: 3.034869e-02	ci left: 4.999103e-03	ci right 5.153457e-03	k: 16598	n:3270000
TMPRSS13   3270000 perm   5442 sec   (601 perm/sec)   p_kst 5.075841e-03   p_cons 2.193578e-03   p_joint 3.972477e-04

Joint ci ratio: 1.085328e-01	ci left: 3.759804e-04	ci right 4.194217e-04	k: 1303	n:3280000
Cons ci ratio: 4.615654e-02	ci left: 2.143556e-03	ci right 2.245131e-03	k: 7196	n:3280000
KS ci ratio: 3.028572e-02	ci left: 5.004739e-03	ci right 5.158941e-03	k: 16667	n:3280000
TMPRSS13   3280000 perm   5473 sec   (599 perm/sec)   p_kst 5.081402e-03   p_cons 2.193902e-03   p_joint 3.972561e-04

Joint ci ratio: 1.084081e-01	ci left: 3.757247e-04	ci right 4.190835e-04	k: 1306	n:3290000
Cons ci ratio: 4.610857e-02	ci left: 2.141547e-03	ci right 2.242919e-03	k: 7211	n:3290000
KS ci ratio: 3.024131e-02	ci left: 5.004308e-03	ci right 5.158267e-03	k: 16716	n:3290000
TMPRSS13   3290000 perm   5510 sec   (597 perm/sec)   p_kst 5.080851e-03   p_cons 2.191793e-03   p_joint 3.969605e-04

Joint ci ratio: 1.081190e-01	ci left: 3.766500e-04	ci right 4.199921e-04	k: 1313	n:3300000
Cons ci ratio: 4.602565e-02	ci left: 2.142846e-03	ci right 2.244092e-03	k: 7237	n:3300000
KS ci ratio: 3.018172e-02	ci left: 5.008993e-03	ci right 5.162787e-03	k: 16782	n:3300000
TMPRSS13   3300000 perm   5543 sec   (595 perm/sec)   p_kst 5.085455e-03   p_cons 2.193030e-03   p_joint 3.978788e-04

Joint ci ratio: 1.077098e-01	ci left: 3.784517e-04	ci right 4.218259e-04	k: 1323	n:3310000
Cons ci ratio: 4.594952e-02	ci left: 2.143539e-03	ci right 2.244646e-03	k: 7261	n:3310000
KS ci ratio: 3.013237e-02	ci left: 5.010351e-03	ci right 5.163931e-03	k: 16837	n:3310000
TMPRSS13   3310000 perm   5576 sec   (594 perm/sec)   p_kst 5.086707e-03   p_cons 2.193656e-03   p_joint 3.996979e-04

Joint ci ratio: 1.074665e-01	ci left: 3.790704e-04	ci right 4.224112e-04	k: 1329	n:3320000
Cons ci ratio: 4.586115e-02	ci left: 2.145420e-03	ci right 2.246416e-03	k: 7289	n:3320000
KS ci ratio: 3.007342e-02	ci left: 5.014990e-03	ci right 5.168406e-03	k: 16903	n:3320000
TMPRSS13   3320000 perm   5609 sec   (592 perm/sec)   p_kst 5.091265e-03   p_cons 2.195482e-03   p_joint 4.003012e-04

Joint ci ratio: 1.087837e-01	ci left: 3.685822e-04	ci right 4.112734e-04	k: 1297	n:3330000
Cons ci ratio: 4.580466e-02	ci left: 2.144320e-03	ci right 2.245137e-03	k: 7307	n:3330000
KS ci ratio: 3.003528e-02	ci left: 5.012745e-03	ci right 5.165895e-03	k: 16946	n:3330000
TMPRSS13   3330000 perm   5642 sec   (590 perm/sec)   p_kst 5.088889e-03   p_cons 2.194294e-03   p_joint 3.894895e-04

Joint ci ratio: 1.085748e-01	ci left: 3.689349e-04	ci right 4.115798e-04	k: 1302	n:3340000
Cons ci ratio: 4.572649e-02	ci left: 2.145300e-03	ci right 2.245986e-03	k: 7332	n:3340000
KS ci ratio: 2.998398e-02	ci left: 5.014972e-03	ci right 5.167924e-03	k: 17004	n:3340000
TMPRSS13   3340000 perm   5676 sec   (588 perm/sec)   p_kst 5.091018e-03   p_cons 2.195210e-03   p_joint 3.898204e-04

Joint ci ratio: 1.084085e-01	ci left: 3.689953e-04	ci right 4.115776e-04	k: 1306	n:3350000
Cons ci ratio: 4.565805e-02	ci left: 2.145388e-03	ci right 2.245923e-03	k: 7354	n:3350000
KS ci ratio: 2.993912e-02	ci left: 5.015112e-03	ci right 5.167835e-03	k: 17055	n:3350000
TMPRSS13   3350000 perm   5709 sec   (587 perm/sec)   p_kst 5.091045e-03   p_cons 2.195224e-03   p_joint 3.898507e-04

Joint ci ratio: 1.084086e-01	ci left: 3.678971e-04	ci right 4.103527e-04	k: 1306	n:3360000
Cons ci ratio: 4.560851e-02	ci left: 2.143710e-03	ci right 2.244055e-03	k: 7370	n:3360000
KS ci ratio: 2.990236e-02	ci left: 5.012592e-03	ci right 5.165048e-03	k: 17097	n:3360000
TMPRSS13   3360000 perm   5744 sec   (585 perm/sec)   p_kst 5.088393e-03   p_cons 2.193452e-03   p_joint 3.886905e-04

Joint ci ratio: 1.082431e-01	ci left: 3.679602e-04	ci right 4.103541e-04	k: 1310	n:3370000
Cons ci ratio: 4.553443e-02	ci left: 2.144390e-03	ci right 2.244599e-03	k: 7394	n:3370000
KS ci ratio: 2.985524e-02	ci left: 5.013622e-03	ci right 5.165865e-03	k: 17151	n:3370000
TMPRSS13   3370000 perm   5776 sec   (583 perm/sec)   p_kst 5.089318e-03   p_cons 2.194065e-03   p_joint 3.887240e-04

Joint ci ratio: 1.080372e-01	ci left: 3.683108e-04	ci right 4.106593e-04	k: 1315	n:3380000
Cons ci ratio: 4.546070e-02	ci left: 2.145065e-03	ci right 2.245140e-03	k: 7418	n:3380000
KS ci ratio: 2.980747e-02	ci left: 5.014940e-03	ci right 5.166975e-03	k: 17206	n:3380000
TMPRSS13   3380000 perm   5810 sec   (582 perm/sec)   p_kst 5.090533e-03   p_cons 2.194675e-03   p_joint 3.890533e-04

Joint ci ratio: 1.079143e-01	ci left: 3.680854e-04	ci right 4.103568e-04	k: 1318	n:3390000
Cons ci ratio: 4.539345e-02	ci left: 2.145154e-03	ci right 2.245080e-03	k: 7440	n:3390000
KS ci ratio: 2.975993e-02	ci left: 5.016250e-03	ci right 5.168078e-03	k: 17261	n:3390000
TMPRSS13   3390000 perm   5845 sec   (580 perm/sec)   p_kst 5.091740e-03   p_cons 2.194690e-03   p_joint 3.887906e-04

Joint ci ratio: 1.077511e-01	ci left: 3.681475e-04	ci right 4.103580e-04	k: 1322	n:3400000
Cons ci ratio: 4.532954e-02	ci left: 2.144951e-03	ci right 2.244724e-03	k: 7461	n:3400000
KS ci ratio: 2.971865e-02	ci left: 5.015509e-03	ci right 5.167100e-03	k: 17309	n:3400000
TMPRSS13   3400000 perm   5888 sec   (577 perm/sec)   p_kst 5.090882e-03   p_cons 2.194412e-03   p_joint 3.888235e-04

Joint ci ratio: 1.076291e-01	ci left: 3.679240e-04	ci right 4.100581e-04	k: 1325	n:3410000
Cons ci ratio: 4.526589e-02	ci left: 2.144749e-03	ci right 2.244369e-03	k: 7482	n:3410000
KS ci ratio: 2.968356e-02	ci left: 5.012735e-03	ci right 5.164060e-03	k: 17350	n:3410000
TMPRSS13   3410000 perm   5925 sec   (575 perm/sec)   p_kst 5.087977e-03   p_cons 2.194135e-03   p_joint 3.885630e-04

Joint ci ratio: 1.075076e-01	ci left: 3.677018e-04	ci right 4.097599e-04	k: 1328	n:3420000
Cons ci ratio: 4.520252e-02	ci left: 2.144549e-03	ci right 2.244016e-03	k: 7503	n:3420000
KS ci ratio: 2.964003e-02	ci left: 5.012880e-03	ci right 5.163984e-03	k: 17401	n:3420000
TMPRSS13   3420000 perm   5960 sec   (574 perm/sec)   p_kst 5.088012e-03   p_cons 2.193860e-03   p_joint 3.883041e-04

Joint ci ratio: 1.074268e-01	ci left: 3.671972e-04	ci right 4.091640e-04	k: 1330	n:3430000
Cons ci ratio: 4.513039e-02	ci left: 2.145215e-03	ci right 2.244550e-03	k: 7527	n:3430000
KS ci ratio: 2.959925e-02	ci left: 5.012155e-03	ci right 5.163026e-03	k: 17449	n:3430000
TMPRSS13   3430000 perm   5998 sec   (572 perm/sec)   p_kst 5.087172e-03   p_cons 2.194461e-03   p_joint 3.877551e-04

Joint ci ratio: 1.073865e-01	ci left: 3.664126e-04	ci right 4.082731e-04	k: 1331	n:3440000
Cons ci ratio: 4.508255e-02	ci left: 2.143577e-03	ci right 2.242729e-03	k: 7543	n:3440000
KS ci ratio: 2.955524e-02	ci left: 5.012590e-03	ci right 5.163245e-03	k: 17501	n:3440000
TMPRSS13   3440000 perm   6031 sec   (570 perm/sec)   p_kst 5.087500e-03   p_cons 2.192733e-03   p_joint 3.869186e-04

Joint ci ratio: 1.077514e-01	ci left: 3.628120e-04	ci right 4.044109e-04	k: 1322	n:3450000
Cons ci ratio: 4.503784e-02	ci left: 2.141663e-03	ci right 2.240625e-03	k: 7558	n:3450000
KS ci ratio: 2.951059e-02	ci left: 5.013309e-03	ci right 5.163755e-03	k: 17554	n:3450000
TMPRSS13   3450000 perm   6067 sec   (569 perm/sec)   p_kst 5.088116e-03   p_cons 2.190725e-03   p_joint 3.831884e-04

Joint ci ratio: 1.088265e-01	ci left: 3.544524e-04	ci right 3.955242e-04	k: 1296	n:3460000
Cons ci ratio: 4.498136e-02	ci left: 2.140903e-03	ci right 2.239702e-03	k: 7577	n:3460000
KS ci ratio: 2.945856e-02	ci left: 5.016607e-03	ci right 5.166882e-03	k: 17616	n:3460000
TMPRSS13   3460000 perm   6102 sec   (567 perm/sec)   p_kst 5.091329e-03   p_cons 2.189884e-03   p_joint 3.745665e-04

Joint ci ratio: 1.087009e-01	ci left: 3.542720e-04	ci right 3.952725e-04	k: 1299	n:3470000
Cons ci ratio: 4.490733e-02	ci left: 2.141856e-03	ci right 2.240533e-03	k: 7602	n:3470000
KS ci ratio: 2.941434e-02	ci left: 5.017311e-03	ci right 5.167378e-03	k: 17669	n:3470000
TMPRSS13   3470000 perm   6142 sec   (565 perm/sec)   p_kst 5.091931e-03   p_cons 2.190778e-03   p_joint 3.743516e-04

Joint ci ratio: 1.082851e-01	ci left: 3.560495e-04	ci right 3.970881e-04	k: 1309	n:3480000
Cons ci ratio: 4.483955e-02	ci left: 2.142237e-03	ci right 2.240778e-03	k: 7625	n:3480000
KS ci ratio: 2.937032e-02	ci left: 5.018012e-03	ci right 5.167871e-03	k: 17722	n:3480000
TMPRSS13   3480000 perm   6176 sec   (563 perm/sec)   p_kst 5.092529e-03   p_cons 2.191092e-03   p_joint 3.761494e-04

Joint ci ratio: 1.081613e-01	ci left: 3.558657e-04	ci right 3.968332e-04	k: 1312	n:3490000
Cons ci ratio: 4.480437e-02	ci left: 2.139498e-03	ci right 2.237835e-03	k: 7637	n:3490000
KS ci ratio: 2.932649e-02	ci left: 5.018708e-03	ci right 5.168361e-03	k: 17775	n:3490000
TMPRSS13   3490000 perm   6210 sec   (562 perm/sec)   p_kst 5.093123e-03   p_cons 2.188252e-03   p_joint 3.759312e-04

Joint ci ratio: 1.079559e-01	ci left: 3.562389e-04	ci right 3.971665e-04	k: 1317	n:3500000
Cons ci ratio: 4.472828e-02	ci left: 2.140731e-03	ci right 2.238953e-03	k: 7663	n:3500000
KS ci ratio: 2.928204e-02	ci left: 5.019685e-03	ci right 5.169136e-03	k: 17829	n:3500000
TMPRSS13   3500000 perm   6246 sec   (560 perm/sec)   p_kst 5.094000e-03   p_cons 2.189429e-03   p_joint 3.762857e-04

Joint ci ratio: 1.079150e-01	ci left: 3.555012e-04	ci right 3.963276e-04	k: 1318	n:3510000
Cons ci ratio: 4.466714e-02	ci left: 2.140548e-03	ci right 2.238624e-03	k: 7684	n:3510000
KS ci ratio: 2.923778e-02	ci left: 5.020656e-03	ci right 5.169906e-03	k: 17883	n:3510000
TMPRSS13   3510000 perm   6282 sec   (559 perm/sec)   p_kst 5.094872e-03   p_cons 2.189174e-03   p_joint 3.754986e-04

Joint ci ratio: 1.082440e-01	ci left: 3.522799e-04	ci right 3.928676e-04	k: 1310	n:3520000
Cons ci ratio: 4.461204e-02	ci left: 2.139804e-03	ci right 2.237722e-03	k: 7703	n:3520000
KS ci ratio: 2.918719e-02	ci left: 5.023878e-03	ci right 5.172961e-03	k: 17945	n:3520000
TMPRSS13   3520000 perm   6318 sec   (557 perm/sec)   p_kst 5.098011e-03   p_cons 2.188352e-03   p_joint 3.721591e-04

Joint ci ratio: 1.080792e-01	ci left: 3.523844e-04	ci right 3.929184e-04	k: 1314	n:3530000
Cons ci ratio: 4.454848e-02	ci left: 2.139905e-03	ci right 2.237685e-03	k: 7725	n:3530000
KS ci ratio: 2.914743e-02	ci left: 5.023425e-03	ci right 5.172289e-03	k: 17994	n:3530000
TMPRSS13   3530000 perm   6351 sec   (556 perm/sec)   p_kst 5.097450e-03   p_cons 2.188385e-03   p_joint 3.722380e-04

Joint ci ratio: 1.079562e-01	ci left: 3.522135e-04	ci right 3.926788e-04	k: 1317	n:3540000
Cons ci ratio: 4.448519e-02	ci left: 2.140006e-03	ci right 2.237647e-03	k: 7747	n:3540000
KS ci ratio: 2.911270e-02	ci left: 5.021293e-03	ci right 5.169913e-03	k: 18037	n:3540000
TMPRSS13   3540000 perm   6388 sec   (554 perm/sec)   p_kst 5.095198e-03   p_cons 2.188418e-03   p_joint 3.720339e-04

Joint ci ratio: 1.078335e-01	ci left: 3.520437e-04	ci right 3.924406e-04	k: 1320	n:3550000
Cons ci ratio: 4.441071e-02	ci left: 2.141220e-03	ci right 2.238749e-03	k: 7773	n:3550000
KS ci ratio: 2.906840e-02	ci left: 5.022529e-03	ci right 5.170956e-03	k: 18092	n:3550000
TMPRSS13   3550000 perm   6424 sec   (553 perm/sec)   p_kst 5.096338e-03   p_cons 2.189577e-03   p_joint 3.718310e-04

Joint ci ratio: 1.077113e-01	ci left: 3.518748e-04	ci right 3.922036e-04	k: 1323	n:3560000
Cons ci ratio: 4.432806e-02	ci left: 2.143262e-03	ci right 2.240697e-03	k: 7802	n:3560000
KS ci ratio: 2.901627e-02	ci left: 5.026547e-03	ci right 5.174822e-03	k: 18157	n:3560000
TMPRSS13   3560000 perm   6458 sec   (551 perm/sec)   p_kst 5.100281e-03   p_cons 2.191573e-03   p_joint 3.716292e-04

Joint ci ratio: 1.074680e-01	ci left: 3.525246e-04	ci right 3.928309e-04	k: 1329	n:3570000
Cons ci ratio: 4.425153e-02	ci left: 2.144737e-03	ci right 2.242067e-03	k: 7829	n:3570000
KS ci ratio: 2.896841e-02	ci left: 5.029152e-03	ci right 5.177255e-03	k: 18217	n:3570000
TMPRSS13   3570000 perm   6493 sec   (550 perm/sec)   p_kst 5.102801e-03   p_cons 2.192997e-03   p_joint 3.722689e-04

Joint ci ratio: 1.073068e-01	ci left: 3.526272e-04	ci right 3.928809e-04	k: 1333	n:3580000
Cons ci ratio: 4.419514e-02	ci left: 2.144271e-03	ci right 2.241453e-03	k: 7849	n:3580000
KS ci ratio: 2.892954e-02	ci left: 5.028692e-03	ci right 5.176579e-03	k: 18266	n:3580000
TMPRSS13   3580000 perm   6530 sec   (548 perm/sec)   p_kst 5.102235e-03   p_cons 2.192458e-03   p_joint 3.723464e-04

Joint ci ratio: 1.072265e-01	ci left: 3.521871e-04	ci right 3.923586e-04	k: 1335	n:3590000
Cons ci ratio: 4.414458e-02	ci left: 2.143257e-03	ci right 2.240279e-03	k: 7867	n:3590000
KS ci ratio: 2.888924e-02	ci left: 5.028788e-03	ci right 5.176469e-03	k: 18317	n:3590000
TMPRSS13   3590000 perm   6564 sec   (547 perm/sec)   p_kst 5.102228e-03   p_cons 2.191365e-03   p_joint 3.718663e-04

Joint ci ratio: 1.070663e-01	ci left: 3.522901e-04	ci right 3.924096e-04	k: 1339	n:3600000
Cons ci ratio: 4.406061e-02	ci left: 2.145545e-03	ci right 2.242481e-03	k: 7897	n:3600000
KS ci ratio: 2.884280e-02	ci left: 5.031090e-03	ci right 5.178597e-03	k: 18376	n:3600000
TMPRSS13   3600000 perm   6601 sec   (545 perm/sec)   p_kst 5.104444e-03   p_cons 2.193611e-03   p_joint 3.719444e-04

Joint ci ratio: 1.068671e-01	ci left: 3.526622e-04	ci right 3.927446e-04	k: 1344	n:3610000
Cons ci ratio: 4.401051e-02	ci left: 2.144533e-03	ci right 2.241310e-03	k: 7915	n:3610000
KS ci ratio: 2.880679e-02	ci left: 5.029804e-03	ci right 5.177086e-03	k: 18422	n:3610000
TMPRSS13   3610000 perm   6636 sec   (544 perm/sec)   p_kst 5.103047e-03   p_cons 2.192521e-03   p_joint 3.722992e-04

Joint ci ratio: 1.068274e-01	ci left: 3.519569e-04	ci right 3.919433e-04	k: 1345	n:3620000
Cons ci ratio: 4.395226e-02	ci left: 2.144346e-03	ci right 2.240983e-03	k: 7936	n:3620000
KS ci ratio: 2.875683e-02	ci left: 5.033462e-03	ci right 5.180591e-03	k: 18486	n:3620000
TMPRSS13   3620000 perm   6674 sec   (542 perm/sec)   p_kst 5.106630e-03   p_cons 2.192265e-03   p_joint 3.715470e-04

Joint ci ratio: 1.066295e-01	ci left: 3.523279e-04	ci right 3.922778e-04	k: 1350	n:3630000
Cons ci ratio: 4.389700e-02	ci left: 2.143888e-03	ci right 2.240380e-03	k: 7956	n:3630000
KS ci ratio: 2.871258e-02	ci left: 5.035185e-03	ci right 5.182135e-03	k: 18543	n:3630000
TMPRSS13   3630000 perm   6710 sec   (541 perm/sec)   p_kst 5.108264e-03   p_cons 2.191736e-03   p_joint 3.719008e-04

Joint ci ratio: 1.065113e-01	ci left: 3.521622e-04	ci right 3.920462e-04	k: 1353	n:3640000
Cons ci ratio: 4.383644e-02	ci left: 2.143976e-03	ci right 2.240335e-03	k: 7978	n:3640000
KS ci ratio: 2.867085e-02	ci left: 5.036081e-03	ci right 5.182840e-03	k: 18597	n:3640000
TMPRSS13   3640000 perm   6746 sec   (540 perm/sec)   p_kst 5.109066e-03   p_cons 2.191758e-03   p_joint 3.717033e-04

Joint ci ratio: 1.063936e-01	ci left: 3.519974e-04	ci right 3.918159e-04	k: 1356	n:3650000
Cons ci ratio: 4.375695e-02	ci left: 2.145960e-03	ci right 2.242230e-03	k: 8007	n:3650000
KS ci ratio: 2.863239e-02	ci left: 5.035884e-03	ci right 5.182437e-03	k: 18647	n:3650000
TMPRSS13   3650000 perm   6781 sec   (538 perm/sec)   p_kst 5.108767e-03   p_cons 2.193699e-03   p_joint 3.715068e-04

Joint ci ratio: 1.072670e-01	ci left: 3.451853e-04	ci right 3.845740e-04	k: 1334	n:3660000
Cons ci ratio: 4.368606e-02	ci left: 2.147123e-03	ci right 2.243285e-03	k: 8033	n:3660000
KS ci ratio: 2.860024e-02	ci left: 5.033518e-03	ci right 5.179835e-03	k: 18689	n:3660000
TMPRSS13   3660000 perm   6816 sec   (537 perm/sec)   p_kst 5.106284e-03   p_cons 2.194809e-03   p_joint 3.644809e-04

Joint ci ratio: 1.070667e-01	ci left: 3.455706e-04	ci right 3.849250e-04	k: 1339	n:3670000
Cons ci ratio: 4.362095e-02	ci left: 2.147741e-03	ci right 2.243783e-03	k: 8057	n:3670000
KS ci ratio: 2.855288e-02	ci left: 5.036576e-03	ci right 5.182735e-03	k: 18751	n:3670000
TMPRSS13   3670000 perm   6853 sec   (536 perm/sec)   p_kst 5.109264e-03   p_cons 2.195368e-03   p_joint 3.648501e-04

Joint ci ratio: 1.069470e-01	ci left: 3.454250e-04	ci right 3.847160e-04	k: 1342	n:3680000
Cons ci ratio: 4.356152e-02	ci left: 2.147817e-03	ci right 2.243729e-03	k: 8079	n:3680000
KS ci ratio: 2.851870e-02	ci left: 5.035031e-03	ci right 5.180967e-03	k: 18796	n:3680000
TMPRSS13   3680000 perm   6888 sec   (534 perm/sec)   p_kst 5.107609e-03   p_cons 2.195380e-03   p_joint 3.646739e-04

Joint ci ratio: 1.068675e-01	ci left: 3.450164e-04	ci right 3.842299e-04	k: 1344	n:3690000
Cons ci ratio: 4.349965e-02	ci left: 2.148162e-03	ci right 2.243950e-03	k: 8102	n:3690000
KS ci ratio: 2.848161e-02	ci left: 5.034570e-03	ci right 5.180300e-03	k: 18845	n:3690000
TMPRSS13   3690000 perm   6923 sec   (533 perm/sec)   p_kst 5.107046e-03   p_cons 2.195664e-03   p_joint 3.642276e-04

Joint ci ratio: 1.067090e-01	ci left: 3.451361e-04	ci right 3.843014e-04	k: 1348	n:3700000
Cons ci ratio: 4.345412e-02	ci left: 2.146901e-03	ci right 2.242530e-03	k: 8119	n:3700000
KS ci ratio: 2.844164e-02	ci left: 5.035186e-03	ci right 5.180726e-03	k: 18898	n:3700000
TMPRSS13   3700000 perm   6958 sec   (532 perm/sec)   p_kst 5.107568e-03   p_cons 2.194324e-03   p_joint 3.643243e-04

Joint ci ratio: 1.065117e-01	ci left: 3.455176e-04	ci right 3.846492e-04	k: 1353	n:3710000
Cons ci ratio: 4.338736e-02	ci left: 2.147779e-03	ci right 2.243297e-03	k: 8144	n:3710000
KS ci ratio: 2.839882e-02	ci left: 5.036868e-03	ci right 5.182235e-03	k: 18955	n:3710000
TMPRSS13   3710000 perm   6992 sec   (531 perm/sec)   p_kst 5.109164e-03   p_cons 2.195148e-03   p_joint 3.646900e-04

Joint ci ratio: 1.063156e-01	ci left: 3.458971e-04	ci right 3.849950e-04	k: 1358	n:3720000
Cons ci ratio: 4.333154e-02	ci left: 2.147590e-03	ci right 2.242973e-03	k: 8165	n:3720000
KS ci ratio: 2.835770e-02	ci left: 5.038008e-03	ci right 5.183194e-03	k: 19010	n:3720000
TMPRSS13   3720000 perm   7030 sec   (529 perm/sec)   p_kst 5.110215e-03   p_cons 2.194892e-03   p_joint 3.650538e-04

Joint ci ratio: 1.068677e-01	ci left: 3.413164e-04	ci right 3.801095e-04	k: 1344	n:3730000
Cons ci ratio: 4.328919e-02	ci left: 2.146075e-03	ci right 2.241295e-03	k: 8181	n:3730000
KS ci ratio: 2.831974e-02	ci left: 5.038078e-03	ci right 5.183067e-03	k: 19061	n:3730000
TMPRSS13   3730000 perm   7064 sec   (528 perm/sec)   p_kst 5.110188e-03   p_cons 2.193298e-03   p_joint 3.603217e-04

Joint ci ratio: 1.090807e-01	ci left: 3.263550e-04	ci right 3.642651e-04	k: 1290	n:3740000
Cons ci ratio: 4.323110e-02	ci left: 2.146156e-03	ci right 2.241249e-03	k: 8203	n:3740000
KS ci ratio: 2.827747e-02	ci left: 5.039740e-03	ci right 5.184557e-03	k: 19118	n:3740000
TMPRSS13   3740000 perm   7101 sec   (527 perm/sec)   p_kst 5.111765e-03   p_cons 2.193316e-03   p_joint 3.449198e-04

Joint ci ratio: 1.089542e-01	ci left: 3.262630e-04	ci right 3.641156e-04	k: 1293	n:3750000
Cons ci ratio: 4.317063e-02	ci left: 2.146500e-03	ci right 2.241471e-03	k: 8226	n:3750000
KS ci ratio: 2.824649e-02	ci left: 5.037421e-03	ci right 5.182011e-03	k: 19160	n:3750000
TMPRSS13   3750000 perm   7138 sec   (525 perm/sec)   p_kst 5.109333e-03   p_cons 2.193600e-03   p_joint 3.448000e-04

Joint ci ratio: 1.087862e-01	ci left: 3.264301e-04	ci right 3.642400e-04	k: 1297	n:3760000
Cons ci ratio: 4.311564e-02	ci left: 2.146316e-03	ci right 2.241155e-03	k: 8247	n:3760000
KS ci ratio: 2.822005e-02	ci left: 5.033531e-03	ci right 5.177871e-03	k: 19196	n:3760000
TMPRSS13   3760000 perm   7177 sec   (524 perm/sec)   p_kst 5.105319e-03   p_cons 2.193351e-03   p_joint 3.449468e-04

Joint ci ratio: 1.086189e-01	ci left: 3.265964e-04	ci right 3.643636e-04	k: 1301	n:3770000
Cons ci ratio: 4.305043e-02	ci left: 2.147183e-03	ci right 2.241913e-03	k: 8272	n:3770000
KS ci ratio: 2.818485e-02	ci left: 5.032821e-03	ci right 5.176959e-03	k: 19244	n:3770000
TMPRSS13   3770000 perm   7213 sec   (523 perm/sec)   p_kst 5.104509e-03   p_cons 2.194164e-03   p_joint 3.450928e-04

Joint ci ratio: 1.083695e-01	ci left: 3.272766e-04	ci right 3.650301e-04	k: 1307	n:3780000
Cons ci ratio: 4.299849e-02	ci left: 2.146736e-03	ci right 2.241330e-03	k: 8292	n:3780000
KS ci ratio: 2.814611e-02	ci left: 5.033430e-03	ci right 5.177383e-03	k: 19297	n:3780000
TMPRSS13   3780000 perm   7249 sec   (521 perm/sec)   p_kst 5.105026e-03   p_cons 2.193651e-03   p_joint 3.457672e-04

Joint ci ratio: 1.082041e-01	ci left: 3.274399e-04	ci right 3.651509e-04	k: 1311	n:3790000
Cons ci ratio: 4.293899e-02	ci left: 2.147076e-03	ci right 2.241550e-03	k: 8315	n:3790000
KS ci ratio: 2.811484e-02	ci left: 5.031415e-03	ci right 5.175148e-03	k: 19340	n:3790000
TMPRSS13   3790000 perm   7285 sec   (520 perm/sec)   p_kst 5.102902e-03   p_cons 2.193931e-03   p_joint 3.459103e-04

Joint ci ratio: 1.079985e-01	ci left: 3.278585e-04	ci right 3.655413e-04	k: 1316	n:3800000
Cons ci ratio: 4.289519e-02	ci left: 2.145851e-03	ci right 2.240173e-03	k: 8332	n:3800000
KS ci ratio: 2.807930e-02	ci left: 5.030978e-03	ci right 5.174514e-03	k: 19389	n:3800000
TMPRSS13   3800000 perm   7323 sec   (519 perm/sec)   p_kst 5.102368e-03   p_cons 2.192632e-03   p_joint 3.463158e-04

Joint ci ratio: 1.081218e-01	ci left: 3.262318e-04	ci right 3.637733e-04	k: 1313	n:3810000
Cons ci ratio: 4.281301e-02	ci left: 2.148528e-03	ci right 2.242782e-03	k: 8364	n:3810000
KS ci ratio: 2.803882e-02	ci left: 5.032369e-03	ci right 5.175734e-03	k: 19445	n:3810000
TMPRSS13   3810000 perm   7360 sec   (518 perm/sec)   p_kst 5.103675e-03   p_cons 2.195276e-03   p_joint 3.446194e-04

Joint ci ratio: 1.079986e-01	ci left: 3.261419e-04	ci right 3.636275e-04	k: 1316	n:3820000
Cons ci ratio: 4.276704e-02	ci left: 2.147565e-03	ci right 2.241674e-03	k: 8382	n:3820000
KS ci ratio: 2.800357e-02	ci left: 5.031932e-03	ci right 5.175102e-03	k: 19494	n:3820000
TMPRSS13   3820000 perm   7400 sec   (516 perm/sec)   p_kst 5.103141e-03   p_cons 2.194241e-03   p_joint 3.445026e-04

Joint ci ratio: 1.078758e-01	ci left: 3.260525e-04	ci right 3.634825e-04	k: 1319	n:3830000
Cons ci ratio: 4.272632e-02	ci left: 2.146091e-03	ci right 2.240043e-03	k: 8398	n:3830000
KS ci ratio: 2.796629e-02	ci left: 5.032276e-03	ci right 5.175262e-03	k: 19546	n:3830000
TMPRSS13   3830000 perm   7443 sec   (515 perm/sec)   p_kst 5.103394e-03   p_cons 2.192689e-03   p_joint 3.443864e-04

Joint ci ratio: 1.075909e-01	ci left: 3.269772e-04	ci right 3.644080e-04	k: 1326	n:3840000
Cons ci ratio: 4.265778e-02	ci left: 2.147458e-03	ci right 2.241316e-03	k: 8425	n:3840000
KS ci ratio: 2.793346e-02	ci left: 5.031067e-03	ci right 5.173848e-03	k: 19592	n:3840000
TMPRSS13   3840000 perm   7480 sec   (513 perm/sec)   p_kst 5.102083e-03   p_cons 2.194010e-03   p_joint 3.453125e-04

Joint ci ratio: 1.073484e-01	ci left: 3.276445e-04	ci right 3.650618e-04	k: 1332	n:3850000
Cons ci ratio: 4.260726e-02	ci left: 2.147020e-03	ci right 2.240744e-03	k: 8445	n:3850000
KS ci ratio: 2.789860e-02	ci left: 5.030637e-03	ci right 5.173226e-03	k: 19641	n:3850000
TMPRSS13   3850000 perm   7518 sec   (512 perm/sec)   p_kst 5.101558e-03   p_cons 2.193506e-03   p_joint 3.459740e-04

Joint ci ratio: 1.072279e-01	ci left: 3.275520e-04	ci right 3.649141e-04	k: 1335	n:3860000
Cons ci ratio: 4.253677e-02	ci left: 2.148634e-03	ci right 2.242270e-03	k: 8473	n:3860000
KS ci ratio: 2.786317e-02	ci left: 5.030468e-03	ci right 5.172867e-03	k: 19691	n:3860000
TMPRSS13   3860000 perm   7558 sec   (511 perm/sec)   p_kst 5.101295e-03   p_cons 2.195078e-03   p_joint 3.458549e-04

Joint ci ratio: 1.069480e-01	ci left: 3.284660e-04	ci right 3.658283e-04	k: 1342	n:3870000
Cons ci ratio: 4.247165e-02	ci left: 2.149729e-03	ci right 2.243266e-03	k: 8499	n:3870000
KS ci ratio: 2.782361e-02	ci left: 5.031839e-03	ci right 5.174071e-03	k: 19747	n:3870000
TMPRSS13   3870000 perm   7596 sec   (509 perm/sec)   p_kst 5.102584e-03   p_cons 2.196124e-03   p_joint 3.467700e-04

Joint ci ratio: 1.068287e-01	ci left: 3.283719e-04	ci right 3.656793e-04	k: 1345	n:3880000
Cons ci ratio: 4.241429e-02	ci left: 2.150054e-03	ci right 2.243475e-03	k: 8522	n:3880000
KS ci ratio: 2.779411e-02	ci left: 5.029619e-03	ci right 5.171636e-03	k: 19789	n:3880000
TMPRSS13   3880000 perm   7636 sec   (508 perm/sec)   p_kst 5.100258e-03   p_cons 2.196392e-03   p_joint 3.466495e-04

Joint ci ratio: 1.075911e-01	ci left: 3.227744e-04	ci right 3.597241e-04	k: 1326	n:3890000
Cons ci ratio: 4.237706e-02	ci left: 2.148342e-03	ci right 2.241605e-03	k: 8537	n:3890000
KS ci ratio: 2.776751e-02	ci left: 5.026390e-03	ci right 5.168178e-03	k: 19827	n:3890000
TMPRSS13   3890000 perm   7675 sec   (507 perm/sec)   p_kst 5.096915e-03   p_cons 2.194602e-03   p_joint 3.408740e-04

Joint ci ratio: 1.075102e-01	ci left: 3.224458e-04	ci right 3.593284e-04	k: 1328	n:3900000
Cons ci ratio: 4.229781e-02	ci left: 2.150951e-03	ci right 2.244149e-03	k: 8569	n:3900000
KS ci ratio: 2.773186e-02	ci left: 5.026488e-03	ci right 5.168094e-03	k: 19878	n:3900000
TMPRSS13   3900000 perm   7716 sec   (505 perm/sec)   p_kst 5.096923e-03   p_cons 2.197179e-03   p_joint 3.405128e-04

Joint ci ratio: 1.071880e-01	ci left: 3.236122e-04	ci right 3.605103e-04	k: 1336	n:3910000
Cons ci ratio: 4.225595e-02	ci left: 2.149752e-03	ci right 2.242803e-03	k: 8586	n:3910000
KS ci ratio: 2.769217e-02	ci left: 5.028110e-03	ci right 5.169555e-03	k: 19935	n:3910000
TMPRSS13   3910000 perm   7757 sec   (504 perm/sec)   p_kst 5.098465e-03   p_cons 2.195908e-03   p_joint 3.416880e-04

Joint ci ratio: 1.069881e-01	ci left: 3.240280e-04	ci right 3.609003e-04	k: 1341	n:3920000
Cons ci ratio: 4.219947e-02	ci left: 2.150073e-03	ci right 2.243011e-03	k: 8609	n:3920000
KS ci ratio: 2.765821e-02	ci left: 5.027697e-03	ci right 5.168954e-03	k: 19984	n:3920000
TMPRSS13   3920000 perm   7794 sec   (503 perm/sec)   p_kst 5.097959e-03   p_cons 2.196173e-03   p_joint 3.420918e-04

Joint ci ratio: 1.624772e-01	ci left: 1.360596e-04	ci right 1.603612e-04	k: 581	n:3930000
Cons ci ratio: 4.214321e-02	ci left: 2.150393e-03	ci right 2.243218e-03	k: 8632	n:3930000
KS ci ratio: 2.762576e-02	ci left: 5.026780e-03	ci right 5.167844e-03	k: 20031	n:3930000
TMPRSS13   3930000 perm   7835 sec   (502 perm/sec)   p_kst 5.096947e-03   p_cons 2.196438e-03   p_joint 1.478372e-04

Joint ci ratio: 1.650499e-01	ci left: 1.313330e-04	ci right 1.551986e-04	k: 563	n:3940000
Cons ci ratio: 4.208231e-02	ci left: 2.151214e-03	ci right 2.243937e-03	k: 8657	n:3940000
KS ci ratio: 2.758445e-02	ci left: 5.029145e-03	ci right 5.170061e-03	k: 20091	n:3940000
TMPRSS13   3940000 perm   7879 sec   (500 perm/sec)   p_kst 5.099239e-03   p_cons 2.197208e-03   p_joint 1.428934e-04

Joint ci ratio: 1.647581e-01	ci left: 1.314859e-04	ci right 1.553329e-04	k: 565	n:3950000
Cons ci ratio: 4.202409e-02	ci left: 2.151780e-03	ci right 2.244395e-03	k: 8681	n:3950000
KS ci ratio: 2.753645e-02	ci left: 5.034013e-03	ci right 5.174815e-03	k: 20161	n:3950000
TMPRSS13   3950000 perm   7919 sec   (499 perm/sec)   p_kst 5.104051e-03   p_cons 2.197722e-03   p_joint 1.430380e-04

Joint ci ratio: 1.644677e-01	ci left: 1.316381e-04	ci right 1.554665e-04	k: 567	n:3960000
Cons ci ratio: 4.196611e-02	ci left: 2.152343e-03	ci right 2.244852e-03	k: 8705	n:3960000
KS ci ratio: 2.750032e-02	ci left: 5.034592e-03	ci right 5.175224e-03	k: 20214	n:3960000
TMPRSS13   3960000 perm   7957 sec   (498 perm/sec)   p_kst 5.104545e-03   p_cons 2.198232e-03   p_joint 1.431818e-04

Joint ci ratio: 1.643232e-01	ci left: 1.315481e-04	ci right 1.553371e-04	k: 568	n:3970000
Cons ci ratio: 4.190838e-02	ci left: 2.152903e-03	ci right 2.245306e-03	k: 8729	n:3970000
KS ci ratio: 2.746434e-02	ci left: 5.035169e-03	ci right 5.175630e-03	k: 20267	n:3970000
TMPRSS13   3970000 perm   7996 sec   (497 perm/sec)   p_kst 5.105038e-03   p_cons 2.198741e-03   p_joint 1.430730e-04

Joint ci ratio: 1.641790e-01	ci left: 1.314585e-04	ci right 1.552084e-04	k: 569	n:3980000
Cons ci ratio: 4.184849e-02	ci left: 2.153710e-03	ci right 2.246012e-03	k: 8754	n:3980000
KS ci ratio: 2.742714e-02	ci left: 5.036242e-03	ci right 5.176539e-03	k: 20322	n:3980000
TMPRSS13   3980000 perm   8034 sec   (495 perm/sec)   p_kst 5.106030e-03   p_cons 2.199497e-03   p_joint 1.429648e-04

Joint ci ratio: 1.638917e-01	ci left: 1.316097e-04	ci right 1.553412e-04	k: 571	n:3990000
Cons ci ratio: 4.177693e-02	ci left: 2.155752e-03	ci right 2.247980e-03	k: 8784	n:3990000
KS ci ratio: 2.738873e-02	ci left: 5.037808e-03	ci right 5.177949e-03	k: 20379	n:3990000
TMPRSS13   3990000 perm   8076 sec   (494 perm/sec)   p_kst 5.107519e-03   p_cons 2.201504e-03   p_joint 1.431078e-04

Joint ci ratio: 1.637486e-01	ci left: 1.315204e-04	ci right 1.552131e-04	k: 572	n:4000000
Cons ci ratio: 4.172709e-02	ci left: 2.155558e-03	ci right 2.247665e-03	k: 8805	n:4000000
KS ci ratio: 2.735722e-02	ci left: 5.036883e-03	ci right 5.176835e-03	k: 20426	n:4000000
TMPRSS13   4000000 perm   8116 sec   (493 perm/sec)   p_kst 5.106500e-03   p_cons 2.201250e-03   p_joint 1.430000e-04

Joint ci ratio: 1.636059e-01	ci left: 1.314316e-04	ci right 1.550857e-04	k: 573	n:4010000
Cons ci ratio: 4.166797e-02	ci left: 2.156352e-03	ci right 2.248359e-03	k: 8830	n:4010000
KS ci ratio: 2.731777e-02	ci left: 5.038935e-03	ci right 5.178739e-03	k: 20485	n:4010000
TMPRSS13   4010000 perm   8156 sec   (492 perm/sec)   p_kst 5.108479e-03   p_cons 2.201995e-03   p_joint 1.428928e-04

Joint ci ratio: 1.633216e-01	ci left: 1.315818e-04	ci right 1.552177e-04	k: 575	n:4020000
Cons ci ratio: 4.164918e-02	ci left: 2.152957e-03	ci right 2.244777e-03	k: 8838	n:4020000
KS ci ratio: 2.727449e-02	ci left: 5.042459e-03	ci right 5.182136e-03	k: 20550	n:4020000
TMPRSS13   4020000 perm   8195 sec   (491 perm/sec)   p_kst 5.111940e-03   p_cons 2.198507e-03   p_joint 1.430348e-04

Joint ci ratio: 1.630388e-01	ci left: 1.317313e-04	ci right 1.553491e-04	k: 577	n:4030000
Cons ci ratio: 4.158334e-02	ci left: 2.154490e-03	ci right 2.246227e-03	k: 8866	n:4030000
KS ci ratio: 2.724204e-02	ci left: 5.042023e-03	ci right 5.181518e-03	k: 20599	n:4030000
TMPRSS13   4030000 perm   8238 sec   (489 perm/sec)   p_kst 5.111414e-03   p_cons 2.200000e-03   p_joint 1.431762e-04

Joint ci ratio: 1.626173e-01	ci left: 1.321176e-04	ci right 1.557374e-04	k: 580	n:4040000
Cons ci ratio: 4.152951e-02	ci left: 2.154792e-03	ci right 2.246419e-03	k: 8889	n:4040000
KS ci ratio: 2.721103e-02	ci left: 5.041097e-03	ci right 5.180406e-03	k: 20646	n:4040000
TMPRSS13   4040000 perm   8281 sec   (488 perm/sec)   p_kst 5.110396e-03   p_cons 2.200248e-03   p_joint 1.435644e-04

Joint ci ratio: 1.626173e-01	ci left: 1.317914e-04	ci right 1.553528e-04	k: 580	n:4050000
Cons ci ratio: 4.148521e-02	ci left: 2.154114e-03	ci right 2.245613e-03	k: 8908	n:4050000
KS ci ratio: 2.717682e-02	ci left: 5.041402e-03	ci right 5.180541e-03	k: 20698	n:4050000
TMPRSS13   4050000 perm   8324 sec   (487 perm/sec)   p_kst 5.110617e-03   p_cons 2.199506e-03   p_joint 1.432099e-04

Joint ci ratio: 1.623381e-01	ci left: 1.319393e-04	ci right 1.554828e-04	k: 582	n:4060000
Cons ci ratio: 4.144339e-02	ci left: 2.153196e-03	ci right 2.244561e-03	k: 8926	n:4060000
KS ci ratio: 2.714340e-02	ci left: 5.041461e-03	ci right 5.180428e-03	k: 20749	n:4060000
TMPRSS13   4060000 perm   8364 sec   (485 perm/sec)   p_kst 5.110591e-03   p_cons 2.198522e-03   p_joint 1.433498e-04

Joint ci ratio: 1.619220e-01	ci left: 1.323223e-04	ci right 1.558678e-04	k: 585	n:4070000
Cons ci ratio: 4.138546e-02	ci left: 2.153984e-03	ci right 2.245252e-03	k: 8951	n:4070000
KS ci ratio: 2.711470e-02	ci left: 5.039812e-03	ci right 5.178584e-03	k: 20793	n:4070000
TMPRSS13   4070000 perm   8406 sec   (484 perm/sec)   p_kst 5.108845e-03   p_cons 2.199263e-03   p_joint 1.437346e-04

Joint ci ratio: 1.617841e-01	ci left: 1.322332e-04	ci right 1.557408e-04	k: 586	n:4080000
Cons ci ratio: 4.135549e-02	ci left: 2.151858e-03	ci right 2.242969e-03	k: 8964	n:4080000
KS ci ratio: 2.708804e-02	ci left: 5.037440e-03	ci right 5.176009e-03	k: 20834	n:4080000
TMPRSS13   4080000 perm   8451 sec   (483 perm/sec)   p_kst 5.106373e-03   p_cons 2.197059e-03   p_joint 1.436275e-04

Joint ci ratio: 1.617841e-01	ci left: 1.319099e-04	ci right 1.553600e-04	k: 586	n:4090000
Cons ci ratio: 4.131636e-02	ci left: 2.150710e-03	ci right 2.241684e-03	k: 8981	n:4090000
KS ci ratio: 2.705364e-02	ci left: 5.037994e-03	ci right 5.176400e-03	k: 20887	n:4090000
TMPRSS13   4090000 perm   8496 sec   (481 perm/sec)   p_kst 5.106846e-03   p_cons 2.195844e-03   p_joint 1.432763e-04

Joint ci ratio: 1.613722e-01	ci left: 1.322903e-04	ci right 1.557423e-04	k: 589	n:4100000
Cons ci ratio: 4.124979e-02	ci left: 2.152465e-03	ci right 2.243363e-03	k: 9010	n:4100000
KS ci ratio: 2.702133e-02	ci left: 5.037819e-03	ci right 5.176052e-03	k: 20937	n:4100000
TMPRSS13   4100000 perm   8539 sec   (480 perm/sec)   p_kst 5.106585e-03   p_cons 2.197561e-03   p_joint 1.436585e-04

Joint ci ratio: 1.610994e-01	ci left: 1.324354e-04	ci right 1.558696e-04	k: 591	n:4110000
Cons ci ratio: 4.119496e-02	ci left: 2.153007e-03	ci right 2.243804e-03	k: 9034	n:4110000
KS ci ratio: 2.699235e-02	ci left: 5.036437e-03	ci right 5.174481e-03	k: 20982	n:4110000
TMPRSS13   4110000 perm   8585 sec   (479 perm/sec)   p_kst 5.105109e-03   p_cons 2.198054e-03   p_joint 1.437956e-04

Joint ci ratio: 1.609635e-01	ci left: 1.323469e-04	ci right 1.557438e-04	k: 592	n:4120000
Cons ci ratio: 4.115400e-02	ci left: 2.152105e-03	ci right 2.242772e-03	k: 9052	n:4120000
KS ci ratio: 2.696541e-02	ci left: 5.034338e-03	ci right 5.172184e-03	k: 21024	n:4120000
TMPRSS13   4120000 perm   8625 sec   (478 perm/sec)   p_kst 5.102913e-03   p_cons 2.197087e-03   p_joint 1.436893e-04

Joint ci ratio: 1.633219e-01	ci left: 1.280772e-04	ci right 1.510836e-04	k: 575	n:4130000
Cons ci ratio: 4.109048e-02	ci left: 2.153604e-03	ci right 2.244191e-03	k: 9080	n:4130000
KS ci ratio: 2.693469e-02	ci left: 5.033692e-03	ci right 5.171362e-03	k: 21072	n:4130000
TMPRSS13   4130000 perm   8668 sec   (476 perm/sec)   p_kst 5.102179e-03   p_cons 2.198547e-03   p_joint 1.392252e-04

Joint ci ratio: 1.633220e-01	ci left: 1.277678e-04	ci right 1.507187e-04	k: 575	n:4140000
Cons ci ratio: 4.103854e-02	ci left: 2.153901e-03	ci right 2.244382e-03	k: 9103	n:4140000
KS ci ratio: 2.689896e-02	ci left: 5.034969e-03	ci right 5.172488e-03	k: 21128	n:4140000
TMPRSS13   4140000 perm   8712 sec   (475 perm/sec)   p_kst 5.103382e-03   p_cons 2.198792e-03   p_joint 1.388889e-04

Joint ci ratio: 1.631804e-01	ci left: 1.276911e-04	ci right 1.506063e-04	k: 576	n:4150000
Cons ci ratio: 4.099579e-02	ci left: 2.153242e-03	ci right 2.243599e-03	k: 9122	n:4150000
KS ci ratio: 2.686528e-02	ci left: 5.035522e-03	ci right 5.172881e-03	k: 21181	n:4150000
TMPRSS13   4150000 perm   8753 sec   (474 perm/sec)   p_kst 5.103855e-03   p_cons 2.198072e-03   p_joint 1.387952e-04

Joint ci ratio: 1.630392e-01	ci left: 1.276147e-04	ci right 1.504945e-04	k: 577	n:4160000
Cons ci ratio: 4.093524e-02	ci left: 2.154490e-03	ci right 2.244763e-03	k: 9149	n:4160000
KS ci ratio: 2.683363e-02	ci left: 5.035356e-03	ci right 5.172546e-03	k: 21231	n:4160000
TMPRSS13   4160000 perm   8799 sec   (473 perm/sec)   p_kst 5.103606e-03   p_cons 2.199279e-03   p_joint 1.387019e-04

Joint ci ratio: 1.628983e-01	ci left: 1.275387e-04	ci right 1.503831e-04	k: 578	n:4170000
Cons ci ratio: 4.087718e-02	ci left: 2.155494e-03	ci right 2.245679e-03	k: 9175	n:4170000
KS ci ratio: 2.680779e-02	ci left: 5.033047e-03	ci right 5.170040e-03	k: 21272	n:4170000
TMPRSS13   4170000 perm   8841 sec   (472 perm/sec)   p_kst 5.101199e-03   p_cons 2.200240e-03   p_joint 1.386091e-04

Joint ci ratio: 1.627578e-01	ci left: 1.274631e-04	ci right 1.502723e-04	k: 579	n:4180000
Cons ci ratio: 4.081493e-02	ci left: 2.156968e-03	ci right 2.247073e-03	k: 9203	n:4180000
KS ci ratio: 2.677572e-02	ci left: 5.033125e-03	ci right 5.169954e-03	k: 21323	n:4180000
TMPRSS13   4180000 perm   8889 sec   (470 perm/sec)   p_kst 5.101196e-03   p_cons 2.201675e-03   p_joint 1.385167e-04

Joint ci ratio: 1.627579e-01	ci left: 1.271588e-04	ci right 1.499137e-04	k: 579	n:4190000
Cons ci ratio: 4.076181e-02	ci left: 2.157490e-03	ci right 2.247497e-03	k: 9227	n:4190000
KS ci ratio: 2.673558e-02	ci left: 5.036285e-03	ci right 5.172992e-03	k: 21387	n:4190000
TMPRSS13   4190000 perm   8931 sec   (469 perm/sec)   p_kst 5.104296e-03   p_cons 2.202148e-03   p_joint 1.381862e-04

Joint ci ratio: 1.624779e-01	ci left: 1.273129e-04	ci right 1.500523e-04	k: 581	n:4200000
Cons ci ratio: 4.070228e-02	ci left: 2.158716e-03	ci right 2.248639e-03	k: 9254	n:4200000
KS ci ratio: 2.670189e-02	ci left: 5.037065e-03	ci right 5.173618e-03	k: 21441	n:4200000
TMPRSS13   4200000 perm   8976 sec   (468 perm/sec)   p_kst 5.105000e-03   p_cons 2.203333e-03   p_joint 1.383333e-04

Joint ci ratio: 1.624780e-01	ci left: 1.270105e-04	ci right 1.496959e-04	k: 581	n:4210000
Cons ci ratio: 4.065399e-02	ci left: 2.158761e-03	ci right 2.248577e-03	k: 9276	n:4210000
KS ci ratio: 2.666707e-02	ci left: 5.038314e-03	ci right 5.174720e-03	k: 21497	n:4210000
TMPRSS13   4210000 perm   9020 sec   (467 perm/sec)   p_kst 5.106176e-03   p_cons 2.203325e-03   p_joint 1.380048e-04

Joint ci ratio: 1.683676e-01	ci left: 1.176231e-04	ci right 1.394706e-04	k: 541	n:4220000
Cons ci ratio: 4.060806e-02	ci left: 2.158571e-03	ci right 2.248275e-03	k: 9297	n:4220000
KS ci ratio: 2.663984e-02	ci left: 5.036732e-03	ci right 5.172953e-03	k: 21541	n:4220000
TMPRSS13   4220000 perm   9069 sec   (465 perm/sec)   p_kst 5.104502e-03   p_cons 2.203081e-03   p_joint 1.281991e-04

Joint ci ratio: 1.675962e-01	ci left: 1.184774e-04	ci right 1.403726e-04	k: 546	n:4230000
Cons ci ratio: 4.055357e-02	ci left: 2.159318e-03	ci right 2.248930e-03	k: 9322	n:4230000
KS ci ratio: 2.661208e-02	ci left: 5.035392e-03	ci right 5.171433e-03	k: 21586	n:4230000
TMPRSS13   4230000 perm   9111 sec   (464 perm/sec)   p_kst 5.103073e-03   p_cons 2.203783e-03   p_joint 1.290780e-04

Joint ci ratio: 1.674433e-01	ci left: 1.184239e-04	ci right 1.402872e-04	k: 547	n:4240000
Cons ci ratio: 4.050580e-02	ci left: 2.159362e-03	ci right 2.248868e-03	k: 9344	n:4240000
KS ci ratio: 2.658070e-02	ci left: 5.035464e-03	ci right 5.171345e-03	k: 21637	n:4240000
TMPRSS13   4240000 perm   9154 sec   (463 perm/sec)   p_kst 5.103066e-03   p_cons 2.203774e-03   p_joint 1.290094e-04

Joint ci ratio: 1.674433e-01	ci left: 1.181452e-04	ci right 1.399572e-04	k: 547	n:4250000
Cons ci ratio: 4.045388e-02	ci left: 2.159871e-03	ci right 2.249280e-03	k: 9368	n:4250000
KS ci ratio: 2.655559e-02	ci left: 5.033199e-03	ci right 5.168888e-03	k: 21678	n:4250000
TMPRSS13   4250000 perm   9196 sec   (462 perm/sec)   p_kst 5.100706e-03   p_cons 2.204235e-03   p_joint 1.287059e-04

Joint ci ratio: 1.671386e-01	ci left: 1.183177e-04	ci right 1.401177e-04	k: 549	n:4260000
Cons ci ratio: 4.038277e-02	ci left: 2.162469e-03	ci right 2.251825e-03	k: 9401	n:4260000
KS ci ratio: 2.652195e-02	ci left: 5.034209e-03	ci right 5.169751e-03	k: 21733	n:4260000
TMPRSS13   4260000 perm   9240 sec   (461 perm/sec)   p_kst 5.101643e-03   p_cons 2.206808e-03   p_joint 1.288732e-04

Joint ci ratio: 1.669868e-01	ci left: 1.182650e-04	ci right 1.400336e-04	k: 550	n:4270000
Cons ci ratio: 4.033346e-02	ci left: 2.162736e-03	ci right 2.251992e-03	k: 9424	n:4270000
KS ci ratio: 2.648600e-02	ci left: 5.036145e-03	ci right 5.171553e-03	k: 21792	n:4270000
TMPRSS13   4270000 perm   9288 sec   (460 perm/sec)   p_kst 5.103513e-03   p_cons 2.207026e-03   p_joint 1.288056e-04

Joint ci ratio: 1.668355e-01	ci left: 1.182126e-04	ci right 1.399498e-04	k: 551	n:4280000
Cons ci ratio: 4.028861e-02	ci left: 2.162540e-03	ci right 2.251687e-03	k: 9445	n:4280000
KS ci ratio: 2.645141e-02	ci left: 5.037608e-03	ci right 5.172876e-03	k: 21849	n:4280000
TMPRSS13   4280000 perm   9331 sec   (459 perm/sec)   p_kst 5.104907e-03   p_cons 2.206776e-03   p_joint 1.287383e-04

Joint ci ratio: 1.682126e-01	ci left: 1.159271e-04	ci right 1.374378e-04	k: 542	n:4290000
Cons ci ratio: 4.024603e-02	ci left: 2.162115e-03	ci right 2.251147e-03	k: 9465	n:4290000
KS ci ratio: 2.641393e-02	ci left: 5.040222e-03	ci right 5.175365e-03	k: 21911	n:4290000
TMPRSS13   4290000 perm   9375 sec   (458 perm/sec)   p_kst 5.107459e-03   p_cons 2.206294e-03   p_joint 1.263403e-04

Joint ci ratio: 1.292247e-01	ci left: 2.001261e-04	ci right 2.279961e-04	k: 919	n:4300000
Cons ci ratio: 4.020360e-02	ci left: 2.161691e-03	ci right 2.250610e-03	k: 9485	n:4300000
KS ci ratio: 2.638144e-02	ci left: 5.040976e-03	ci right 5.175970e-03	k: 21965	n:4300000
TMPRSS13   4300000 perm   9423 sec   (456 perm/sec)   p_kst 5.108140e-03   p_cons 2.205814e-03   p_joint 2.137209e-04

Joint ci ratio: 1.289447e-01	ci left: 2.005599e-04	ci right 2.284251e-04	k: 923	n:4310000
Cons ci ratio: 4.016341e-02	ci left: 2.161039e-03	ci right 2.249840e-03	k: 9504	n:4310000
KS ci ratio: 2.634906e-02	ci left: 5.041727e-03	ci right 5.176573e-03	k: 22019	n:4310000
TMPRSS13   4310000 perm   9467 sec   (455 perm/sec)   p_kst 5.108817e-03   p_cons 2.205104e-03   p_joint 2.141531e-04

Joint ci ratio: 1.287359e-01	ci left: 2.007677e-04	ci right 2.286131e-04	k: 926	n:4320000
Cons ci ratio: 4.011490e-02	ci left: 2.161308e-03	ci right 2.250010e-03	k: 9527	n:4320000
KS ci ratio: 2.632219e-02	ci left: 5.040404e-03	ci right 5.175075e-03	k: 22064	n:4320000
TMPRSS13   4320000 perm   9513 sec   (454 perm/sec)   p_kst 5.107407e-03   p_cons 2.205324e-03   p_joint 2.143519e-04

Joint ci ratio: 1.285972e-01	ci left: 2.007510e-04	ci right 2.285619e-04	k: 928	n:4330000
Cons ci ratio: 4.006236e-02	ci left: 2.162032e-03	ci right 2.250645e-03	k: 9552	n:4330000
KS ci ratio: 2.629780e-02	ci left: 5.038170e-03	ci right 5.172655e-03	k: 22105	n:4330000
TMPRSS13   4330000 perm   9559 sec   (453 perm/sec)   p_kst 5.105081e-03   p_cons 2.206005e-03   p_joint 2.143187e-04

Joint ci ratio: 1.283212e-01	ci left: 2.011805e-04	ci right 2.289865e-04	k: 932	n:4340000
Cons ci ratio: 4.000793e-02	ci left: 2.162981e-03	ci right 2.251510e-03	k: 9578	n:4340000
KS ci ratio: 2.625680e-02	ci left: 5.042356e-03	ci right 5.176739e-03	k: 22174	n:4340000
TMPRSS13   4340000 perm   9608 sec   (452 perm/sec)   p_kst 5.109217e-03   p_cons 2.206912e-03   p_joint 2.147465e-04

Joint ci ratio: 1.280470e-01	ci left: 2.016081e-04	ci right 2.294091e-04	k: 936	n:4350000
Cons ci ratio: 3.993915e-02	ci left: 2.165519e-03	ci right 2.253996e-03	k: 9611	n:4350000
KS ci ratio: 2.622429e-02	ci left: 5.043325e-03	ci right 5.177565e-03	k: 22229	n:4350000
TMPRSS13   4350000 perm   9651 sec   (451 perm/sec)   p_kst 5.110115e-03   p_cons 2.209425e-03   p_joint 2.151724e-04

Joint ci ratio: 1.279106e-01	ci left: 2.015897e-04	ci right 2.293564e-04	k: 938	n:4360000
Cons ci ratio: 3.988315e-02	ci left: 2.166683e-03	ci right 2.255081e-03	k: 9638	n:4360000
KS ci ratio: 2.619662e-02	ci left: 5.042467e-03	ci right 5.176541e-03	k: 22276	n:4360000
TMPRSS13   4360000 perm   9696 sec   (450 perm/sec)   p_kst 5.109174e-03   p_cons 2.210550e-03   p_joint 2.151376e-04

Joint ci ratio: 1.277746e-01	ci left: 2.015714e-04	ci right 2.293038e-04	k: 940	n:4370000
Cons ci ratio: 3.982945e-02	ci left: 2.167616e-03	ci right 2.255929e-03	k: 9664	n:4370000
KS ci ratio: 2.616433e-02	ci left: 5.043431e-03	ci right 5.177363e-03	k: 22331	n:4370000
TMPRSS13   4370000 perm   9740 sec   (449 perm/sec)   p_kst 5.110069e-03   p_cons 2.211442e-03   p_joint 2.151030e-04

Joint ci ratio: 1.277068e-01	ci left: 2.013322e-04	ci right 2.290159e-04	k: 941	n:4380000
Cons ci ratio: 3.979243e-02	ci left: 2.166735e-03	ci right 2.254929e-03	k: 9682	n:4380000
KS ci ratio: 2.613568e-02	ci left: 5.043031e-03	ci right 5.176803e-03	k: 22380	n:4380000
TMPRSS13   4380000 perm   9782 sec   (448 perm/sec)   p_kst 5.109589e-03   p_cons 2.210502e-03   p_joint 2.148402e-04

Joint ci ratio: 1.417155e-01	ci left: 1.619096e-04	ci right 1.868213e-04	k: 764	n:4390000
Cons ci ratio: 3.973910e-02	ci left: 2.167663e-03	ci right 2.255774e-03	k: 9708	n:4390000
KS ci ratio: 2.610713e-02	ci left: 5.042632e-03	ci right 5.176245e-03	k: 22429	n:4390000
TMPRSS13   4390000 perm   9825 sec   (447 perm/sec)   p_kst 5.109112e-03   p_cons 2.211390e-03   p_joint 1.740319e-04

Joint ci ratio: 1.415306e-01	ci left: 1.619800e-04	ci right 1.868674e-04	k: 766	n:4400000
Cons ci ratio: 3.969211e-02	ci left: 2.167912e-03	ci right 2.255927e-03	k: 9731	n:4400000
KS ci ratio: 2.608274e-02	ci left: 5.040654e-03	ci right 5.174089e-03	k: 22471	n:4400000
TMPRSS13   4400000 perm   9870 sec   (446 perm/sec)   p_kst 5.107045e-03   p_cons 2.211591e-03   p_joint 1.740909e-04

Joint ci ratio: 1.414385e-01	ci left: 1.618315e-04	ci right 1.866784e-04	k: 767	n:4410000
Cons ci ratio: 3.962900e-02	ci left: 2.169956e-03	ci right 2.257910e-03	k: 9762	n:4410000
KS ci ratio: 2.604622e-02	ci left: 5.043417e-03	ci right 5.176735e-03	k: 22534	n:4410000
TMPRSS13   4410000 perm   9918 sec   (445 perm/sec)   p_kst 5.109751e-03   p_cons 2.213605e-03   p_joint 1.739229e-04

Joint ci ratio: 1.413465e-01	ci left: 1.616836e-04	ci right 1.864903e-04	k: 768	n:4420000
Cons ci ratio: 3.959659e-02	ci left: 2.168631e-03	ci right 2.256458e-03	k: 9778	n:4420000
KS ci ratio: 2.601564e-02	ci left: 5.043920e-03	ci right 5.177092e-03	k: 22587	n:4420000
TMPRSS13   4420000 perm   9961 sec   (444 perm/sec)   p_kst 5.110181e-03   p_cons 2.212217e-03   p_joint 1.737557e-04

Joint ci ratio: 1.412547e-01	ci left: 1.615363e-04	ci right 1.863030e-04	k: 769	n:4430000
Cons ci ratio: 3.956427e-02	ci left: 2.167312e-03	ci right 2.255012e-03	k: 9794	n:4430000
KS ci ratio: 2.598056e-02	ci left: 5.046214e-03	ci right 5.179265e-03	k: 22648	n:4430000
TMPRSS13   4430000 perm   10007 sec   (443 perm/sec)   p_kst 5.112415e-03   p_cons 2.210835e-03   p_joint 1.735892e-04

Joint ci ratio: 1.412547e-01	ci left: 1.611725e-04	ci right 1.858834e-04	k: 769	n:4440000
Cons ci ratio: 3.952597e-02	ci left: 2.166667e-03	ci right 2.254254e-03	k: 9813	n:4440000
KS ci ratio: 2.594963e-02	ci left: 5.046932e-03	ci right 5.179841e-03	k: 22702	n:4440000
TMPRSS13   4440000 perm   10056 sec   (442 perm/sec)   p_kst 5.113063e-03   p_cons 2.210135e-03   p_joint 1.731982e-04

Joint ci ratio: 1.412548e-01	ci left: 1.608103e-04	ci right 1.854657e-04	k: 769	n:4450000
Cons ci ratio: 3.948979e-02	ci left: 2.165803e-03	ci right 2.253274e-03	k: 9831	n:4450000
KS ci ratio: 2.592340e-02	ci left: 5.045861e-03	ci right 5.178605e-03	k: 22748	n:4450000
TMPRSS13   4450000 perm   10098 sec   (441 perm/sec)   p_kst 5.111910e-03   p_cons 2.209213e-03   p_joint 1.728090e-04

Joint ci ratio: 1.409804e-01	ci left: 1.610987e-04	ci right 1.857463e-04	k: 772	n:4460000
Cons ci ratio: 3.945571e-02	ci left: 2.164721e-03	ci right 2.252071e-03	k: 9848	n:4460000
KS ci ratio: 2.588811e-02	ci left: 5.048358e-03	ci right 5.180985e-03	k: 22810	n:4460000
TMPRSS13   4460000 perm   10140 sec   (440 perm/sec)   p_kst 5.114350e-03   p_cons 2.208072e-03   p_joint 1.730942e-04

Joint ci ratio: 1.419945e-01	ci left: 1.583645e-04	ci right 1.827828e-04	k: 761	n:4470000
Cons ci ratio: 3.941572e-02	ci left: 2.164309e-03	ci right 2.251551e-03	k: 9868	n:4470000
KS ci ratio: 2.586093e-02	ci left: 5.047733e-03	ci right 5.180202e-03	k: 22858	n:4470000
TMPRSS13   4470000 perm   10181 sec   (439 perm/sec)   p_kst 5.113647e-03   p_cons 2.207606e-03   p_joint 1.702461e-04

Joint ci ratio: 1.418085e-01	ci left: 1.584416e-04	ci right 1.828371e-04	k: 763	n:4480000
Cons ci ratio: 3.937585e-02	ci left: 2.163898e-03	ci right 2.251033e-03	k: 9888	n:4480000
KS ci ratio: 2.583666e-02	ci left: 5.046002e-03	ci right 5.178299e-03	k: 22901	n:4480000
TMPRSS13   4480000 perm   10229 sec   (438 perm/sec)   p_kst 5.111830e-03   p_cons 2.207143e-03   p_joint 1.703125e-04

Joint ci ratio: 1.486826e-01	ci left: 1.432793e-04	ci right 1.665047e-04	k: 694	n:4490000
Cons ci ratio: 3.931623e-02	ci left: 2.165694e-03	ci right 2.252767e-03	k: 9918	n:4490000
KS ci ratio: 2.580116e-02	ci left: 5.048705e-03	ci right 5.180888e-03	k: 22964	n:4490000
TMPRSS13   4490000 perm   10278 sec   (437 perm/sec)   p_kst 5.114477e-03   p_cons 2.208909e-03   p_joint 1.545657e-04

Joint ci ratio: 1.483627e-01	ci left: 1.436028e-04	ci right 1.668262e-04	k: 697	n:4500000
Cons ci ratio: 3.926478e-02	ci left: 2.166603e-03	ci right 2.253595e-03	k: 9944	n:4500000
KS ci ratio: 2.577313e-02	ci left: 5.048525e-03	ci right 5.180558e-03	k: 23014	n:4500000
TMPRSS13   4500000 perm   10325 sec   (436 perm/sec)   p_kst 5.114222e-03   p_cons 2.209778e-03   p_joint 1.548889e-04

Joint ci ratio: 1.483627e-01	ci left: 1.432844e-04	ci right 1.664563e-04	k: 697	n:4510000
Cons ci ratio: 3.921354e-02	ci left: 2.167507e-03	ci right 2.254420e-03	k: 9970	n:4510000
KS ci ratio: 2.574574e-02	ci left: 5.048125e-03	ci right 5.180006e-03	k: 23063	n:4510000
TMPRSS13   4510000 perm   10372 sec   (435 perm/sec)   p_kst 5.113747e-03   p_cons 2.210643e-03   p_joint 1.545455e-04

Joint ci ratio: 1.482565e-01	ci left: 1.431804e-04	ci right 1.663174e-04	k: 698	n:4520000
Cons ci ratio: 3.917625e-02	ci left: 2.166874e-03	ci right 2.253677e-03	k: 9989	n:4520000
KS ci ratio: 2.571956e-02	ci left: 5.047288e-03	ci right 5.179011e-03	k: 23110	n:4520000
TMPRSS13   4520000 perm   10420 sec   (434 perm/sec)   p_kst 5.112832e-03   p_cons 2.209956e-03   p_joint 1.544248e-04

Joint ci ratio: 1.481506e-01	ci left: 1.430769e-04	ci right 1.661792e-04	k: 699	n:4530000
Cons ci ratio: 3.913710e-02	ci left: 2.166462e-03	ci right 2.253160e-03	k: 10009	n:4530000
KS ci ratio: 2.569011e-02	ci left: 5.047771e-03	ci right 5.179353e-03	k: 23163	n:4530000
TMPRSS13   4530000 perm   10466 sec   (433 perm/sec)   p_kst 5.113245e-03   p_cons 2.209492e-03   p_joint 1.543046e-04

Joint ci ratio: 1.479394e-01	ci left: 1.431860e-04	ci right 1.662700e-04	k: 701	n:4540000
Cons ci ratio: 3.909416e-02	ci left: 2.166489e-03	ci right 2.253091e-03	k: 10031	n:4540000
KS ci ratio: 2.566299e-02	ci left: 5.047376e-03	ci right 5.178807e-03	k: 23212	n:4540000
TMPRSS13   4540000 perm   10508 sec   (432 perm/sec)   p_kst 5.112775e-03   p_cons 2.209471e-03   p_joint 1.544053e-04

Joint ci ratio: 1.478342e-01	ci left: 1.430829e-04	ci right 1.661325e-04	k: 702	n:4550000
Cons ci ratio: 3.903969e-02	ci left: 2.167821e-03	ci right 2.254353e-03	k: 10059	n:4550000
KS ci ratio: 2.563429e-02	ci left: 5.047638e-03	ci right 5.178927e-03	k: 23264	n:4550000
TMPRSS13   4550000 perm   10555 sec   (431 perm/sec)   p_kst 5.112967e-03   p_cons 2.210769e-03   p_joint 1.542857e-04

Joint ci ratio: 1.475197e-01	ci left: 1.434027e-04	ci right 1.664504e-04	k: 705	n:4560000
Cons ci ratio: 3.900095e-02	ci left: 2.167410e-03	ci right 2.253838e-03	k: 10079	n:4560000
KS ci ratio: 2.560183e-02	ci left: 5.049425e-03	ci right 5.180591e-03	k: 23323	n:4560000
TMPRSS13   4560000 perm   10599 sec   (430 perm/sec)   p_kst 5.114693e-03   p_cons 2.210307e-03   p_joint 1.546053e-04

Joint ci ratio: 1.474154e-01	ci left: 1.432997e-04	ci right 1.663130e-04	k: 706	n:4570000
Cons ci ratio: 3.895073e-02	ci left: 2.168301e-03	ci right 2.254651e-03	k: 10105	n:4570000
KS ci ratio: 2.557608e-02	ci left: 5.048594e-03	ci right 5.179605e-03	k: 23370	n:4570000
TMPRSS13   4570000 perm   10645 sec   (429 perm/sec)   p_kst 5.113786e-03   p_cons 2.211160e-03   p_joint 1.544858e-04

Joint ci ratio: 1.409807e-01	ci left: 1.568777e-04	ci right 1.808796e-04	k: 772	n:4580000
Cons ci ratio: 3.891611e-02	ci left: 2.167459e-03	ci right 2.253696e-03	k: 10123	n:4580000
KS ci ratio: 2.554329e-02	ci left: 5.050588e-03	ci right 5.181480e-03	k: 23430	n:4580000
TMPRSS13   4580000 perm   10691 sec   (428 perm/sec)   p_kst 5.115721e-03   p_cons 2.210262e-03   p_joint 1.685590e-04

Joint ci ratio: 1.407987e-01	ci left: 1.569563e-04	ci right 1.809366e-04	k: 774	n:4590000
Cons ci ratio: 3.887774e-02	ci left: 2.167052e-03	ci right 2.253186e-03	k: 10143	n:4590000
KS ci ratio: 2.551608e-02	ci left: 5.050408e-03	ci right 5.181154e-03	k: 23480	n:4590000
TMPRSS13   4590000 perm   10738 sec   (427 perm/sec)   p_kst 5.115468e-03   p_cons 2.209804e-03   p_joint 1.686275e-04

Joint ci ratio: 1.406173e-01	ci left: 1.570346e-04	ci right 1.809933e-04	k: 776	n:4600000
Cons ci ratio: 3.884714e-02	ci left: 2.165785e-03	ci right 2.251800e-03	k: 10159	n:4600000
KS ci ratio: 2.549005e-02	ci left: 5.049797e-03	ci right 5.180392e-03	k: 23528	n:4600000
TMPRSS13   4600000 perm   10783 sec   (427 perm/sec)   p_kst 5.114783e-03   p_cons 2.208478e-03   p_joint 1.686957e-04

Joint ci ratio: 1.425573e-01	ci left: 1.523000e-04	ci right 1.758842e-04	k: 755	n:4610000
Cons ci ratio: 3.880515e-02	ci left: 2.165813e-03	ci right 2.251734e-03	k: 10181	n:4610000
KS ci ratio: 2.546193e-02	ci left: 5.050051e-03	ci right 5.180506e-03	k: 23580	n:4610000
TMPRSS13   4610000 perm   10828 sec   (426 perm/sec)   p_kst 5.114967e-03   p_cons 2.208460e-03   p_joint 1.637744e-04

Joint ci ratio: 1.422753e-01	ci left: 1.525965e-04	ci right 1.761759e-04	k: 758	n:4620000
Cons ci ratio: 3.875758e-02	ci left: 2.166484e-03	ci right 2.252324e-03	k: 10206	n:4620000
KS ci ratio: 2.544310e-02	ci left: 5.046648e-03	ci right 5.176917e-03	k: 23615	n:4620000
TMPRSS13   4620000 perm   10872 sec   (425 perm/sec)   p_kst 5.111472e-03   p_cons 2.209091e-03   p_joint 1.640693e-04

Joint ci ratio: 1.422753e-01	ci left: 1.522669e-04	ci right 1.757954e-04	k: 758	n:4630000
Cons ci ratio: 3.871588e-02	ci left: 2.166510e-03	ci right 2.252257e-03	k: 10228	n:4630000
KS ci ratio: 2.542107e-02	ci left: 5.044547e-03	ci right 5.174648e-03	k: 23656	n:4630000
TMPRSS13   4630000 perm   10916 sec   (424 perm/sec)   p_kst 5.109287e-03   p_cons 2.209071e-03   p_joint 1.637149e-04

Joint ci ratio: 1.420882e-01	ci left: 1.523545e-04	ci right 1.758629e-04	k: 760	n:4640000
Cons ci ratio: 3.866487e-02	ci left: 2.167604e-03	ci right 2.253278e-03	k: 10255	n:4640000
KS ci ratio: 2.538618e-02	ci left: 5.047595e-03	ci right 5.177593e-03	k: 23721	n:4640000
TMPRSS13   4640000 perm   10960 sec   (423 perm/sec)   p_kst 5.112284e-03   p_cons 2.210129e-03   p_joint 1.637931e-04

Joint ci ratio: 1.419950e-01	ci left: 1.522342e-04	ci right 1.757074e-04	k: 761	n:4650000
Cons ci ratio: 3.862535e-02	ci left: 2.167415e-03	ci right 2.252992e-03	k: 10276	n:4650000
KS ci ratio: 2.535733e-02	ci left: 5.048279e-03	ci right 5.178145e-03	k: 23775	n:4650000
TMPRSS13   4650000 perm   11003 sec   (423 perm/sec)   p_kst 5.112903e-03   p_cons 2.209892e-03   p_joint 1.636559e-04

Joint ci ratio: 1.419950e-01	ci left: 1.519076e-04	ci right 1.753304e-04	k: 761	n:4660000
Cons ci ratio: 3.859346e-02	ci left: 2.166377e-03	ci right 2.251840e-03	k: 10293	n:4660000
KS ci ratio: 2.532911e-02	ci left: 5.048747e-03	ci right 5.178478e-03	k: 23828	n:4660000
TMPRSS13   4660000 perm   11046 sec   (422 perm/sec)   p_kst 5.113305e-03   p_cons 2.208798e-03   p_joint 1.633047e-04

Joint ci ratio: 1.417163e-01	ci left: 1.522019e-04	ci right 1.756201e-04	k: 764	n:4670000
Cons ci ratio: 3.856353e-02	ci left: 2.165131e-03	ci right 2.250478e-03	k: 10309	n:4670000
KS ci ratio: 2.530205e-02	ci left: 5.048788e-03	ci right 5.178379e-03	k: 23879	n:4670000
TMPRSS13   4670000 perm   11090 sec   (421 perm/sec)   p_kst 5.113276e-03   p_cons 2.207495e-03   p_joint 1.635974e-04

Joint ci ratio: 1.416238e-01	ci left: 1.520828e-04	ci right 1.754661e-04	k: 765	n:4680000
Cons ci ratio: 3.852619e-02	ci left: 2.164737e-03	ci right 2.249984e-03	k: 10329	n:4680000
KS ci ratio: 2.527507e-02	ci left: 5.048828e-03	ci right 5.178281e-03	k: 23930	n:4680000
TMPRSS13   4680000 perm   11135 sec   (420 perm/sec)   p_kst 5.113248e-03   p_cons 2.207051e-03   p_joint 1.634615e-04

Joint ci ratio: 1.415314e-01	ci left: 1.519642e-04	ci right 1.753127e-04	k: 766	n:4690000
Cons ci ratio: 3.848336e-02	ci left: 2.164978e-03	ci right 2.250137e-03	k: 10352	n:4690000
KS ci ratio: 2.524818e-02	ci left: 5.048869e-03	ci right 5.178183e-03	k: 23981	n:4690000
TMPRSS13   4690000 perm   11182 sec   (419 perm/sec)   p_kst 5.113220e-03   p_cons 2.207249e-03   p_joint 1.633262e-04

Joint ci ratio: 1.414392e-01	ci left: 1.518461e-04	ci right 1.751600e-04	k: 767	n:4700000
Cons ci ratio: 3.843512e-02	ci left: 2.165850e-03	ci right 2.250935e-03	k: 10378	n:4700000
KS ci ratio: 2.521242e-02	ci left: 5.052503e-03	ci right 5.181724e-03	k: 24049	n:4700000
TMPRSS13   4700000 perm   11227 sec   (419 perm/sec)   p_kst 5.116809e-03   p_cons 2.208085e-03   p_joint 1.631915e-04

Joint ci ratio: 1.412554e-01	ci left: 1.519333e-04	ci right 1.752278e-04	k: 769	n:4710000
Cons ci ratio: 3.839260e-02	ci left: 2.166088e-03	ci right 2.251086e-03	k: 10401	n:4710000
KS ci ratio: 2.519256e-02	ci left: 5.049793e-03	ci right 5.178842e-03	k: 24087	n:4710000
TMPRSS13   4710000 perm   11273 sec   (418 perm/sec)   p_kst 5.114013e-03   p_cons 2.208280e-03   p_joint 1.632696e-04

Joint ci ratio: 1.411638e-01	ci left: 1.518158e-04	ci right 1.750759e-04	k: 770	n:4720000
Cons ci ratio: 3.834838e-02	ci left: 2.166535e-03	ci right 2.251450e-03	k: 10425	n:4720000
KS ci ratio: 2.516908e-02	ci left: 5.048568e-03	ci right 5.177464e-03	k: 24132	n:4720000
TMPRSS13   4720000 perm   11320 sec   (417 perm/sec)   p_kst 5.112712e-03   p_cons 2.208686e-03   p_joint 1.631356e-04

Joint ci ratio: 1.408899e-01	ci left: 1.521067e-04	ci right 1.753623e-04	k: 773	n:4730000
Cons ci ratio: 3.830982e-02	ci left: 2.166352e-03	ci right 2.251173e-03	k: 10446	n:4730000
KS ci ratio: 2.514200e-02	ci left: 5.048819e-03	ci right 5.177580e-03	k: 24184	n:4730000
TMPRSS13   4730000 perm   11364 sec   (416 perm/sec)   p_kst 5.112896e-03   p_cons 2.208457e-03   p_joint 1.634249e-04

Joint ci ratio: 1.408900e-01	ci left: 1.517858e-04	ci right 1.749924e-04	k: 773	n:4740000
Cons ci ratio: 3.828421e-02	ci left: 2.164707e-03	ci right 2.249405e-03	k: 10460	n:4740000
KS ci ratio: 2.511345e-02	ci left: 5.049698e-03	ci right 5.178333e-03	k: 24239	n:4740000
TMPRSS13   4740000 perm   11409 sec   (415 perm/sec)   p_kst 5.113713e-03   p_cons 2.206751e-03   p_joint 1.630802e-04

Joint ci ratio: 1.404370e-01	ci left: 1.524818e-04	ci right 1.757136e-04	k: 778	n:4750000
Cons ci ratio: 3.824036e-02	ci left: 2.165154e-03	ci right 2.249771e-03	k: 10484	n:4750000
KS ci ratio: 2.509330e-02	ci left: 5.047226e-03	ci right 5.175694e-03	k: 24278	n:4750000
TMPRSS13   4750000 perm   11458 sec   (415 perm/sec)   p_kst 5.111158e-03   p_cons 2.207158e-03   p_joint 1.637895e-04

Joint ci ratio: 1.401674e-01	ci left: 1.527696e-04	ci right 1.759968e-04	k: 781	n:4760000
Cons ci ratio: 3.821124e-02	ci left: 2.163934e-03	ci right 2.248438e-03	k: 10500	n:4760000
KS ci ratio: 2.506699e-02	ci left: 5.047270e-03	ci right 5.175602e-03	k: 24329	n:4760000
TMPRSS13   4760000 perm   11504 sec   (414 perm/sec)   p_kst 5.111134e-03   p_cons 2.205882e-03   p_joint 1.640756e-04

Joint ci ratio: 1.405273e-01	ci left: 1.516402e-04	ci right 1.747599e-04	k: 777	n:4770000
Cons ci ratio: 3.817309e-02	ci left: 2.163758e-03	ci right 2.248169e-03	k: 10521	n:4770000
KS ci ratio: 2.504076e-02	ci left: 5.047314e-03	ci right 5.175510e-03	k: 24380	n:4770000
TMPRSS13   4770000 perm   11547 sec   (413 perm/sec)   p_kst 5.111111e-03   p_cons 2.205660e-03   p_joint 1.628931e-04

Joint ci ratio: 1.403470e-01	ci left: 1.517267e-04	ci right 1.748274e-04	k: 779	n:4780000
Cons ci ratio: 3.814050e-02	ci left: 2.162961e-03	ci right 2.247267e-03	k: 10539	n:4780000
KS ci ratio: 2.501873e-02	ci left: 5.045694e-03	ci right 5.173735e-03	k: 24423	n:4780000
TMPRSS13   4780000 perm   11592 sec   (412 perm/sec)   p_kst 5.109414e-03   p_cons 2.204812e-03   p_joint 1.629707e-04

Joint ci ratio: 1.402572e-01	ci left: 1.516114e-04	ci right 1.746785e-04	k: 780	n:4790000
Cons ci ratio: 3.808811e-02	ci left: 2.164442e-03	ci right 2.248687e-03	k: 10568	n:4790000
KS ci ratio: 2.499265e-02	ci left: 5.045741e-03	ci right 5.173648e-03	k: 24474	n:4790000
TMPRSS13   4790000 perm   11637 sec   (412 perm/sec)   p_kst 5.109395e-03   p_cons 2.206263e-03   p_joint 1.628392e-04

Joint ci ratio: 1.401675e-01	ci left: 1.514965e-04	ci right 1.745302e-04	k: 781	n:4800000
Cons ci ratio: 3.805393e-02	ci left: 2.163854e-03	ci right 2.247999e-03	k: 10587	n:4800000
KS ci ratio: 2.496665e-02	ci left: 5.045787e-03	ci right 5.173561e-03	k: 24525	n:4800000
TMPRSS13   4800000 perm   11682 sec   (411 perm/sec)   p_kst 5.109375e-03   p_cons 2.205625e-03   p_joint 1.627083e-04

Joint ci ratio: 1.401675e-01	ci left: 1.511816e-04	ci right 1.741673e-04	k: 781	n:4810000
Cons ci ratio: 3.800369e-02	ci left: 2.165121e-03	ci right 2.249201e-03	k: 10615	n:4810000
KS ci ratio: 2.493665e-02	ci left: 5.047487e-03	ci right 5.175147e-03	k: 24584	n:4810000
TMPRSS13   4810000 perm   11728 sec   (410 perm/sec)   p_kst 5.111019e-03   p_cons 2.206861e-03   p_joint 1.623701e-04

Joint ci ratio: 1.401675e-01	ci left: 1.508679e-04	ci right 1.738060e-04	k: 781	n:4820000
Cons ci ratio: 3.796080e-02	ci left: 2.165561e-03	ci right 2.249562e-03	k: 10639	n:4820000
KS ci ratio: 2.490981e-02	ci left: 5.047942e-03	ci right 5.175475e-03	k: 24637	n:4820000
TMPRSS13   4820000 perm   11774 sec   (409 perm/sec)   p_kst 5.111411e-03   p_cons 2.207261e-03   p_joint 1.620332e-04

Joint ci ratio: 1.400780e-01	ci left: 1.507553e-04	ci right 1.736604e-04	k: 782	n:4830000
Cons ci ratio: 3.790558e-02	ci left: 2.167435e-03	ci right 2.251383e-03	k: 10670	n:4830000
KS ci ratio: 2.488407e-02	ci left: 5.047984e-03	ci right 5.175384e-03	k: 24688	n:4830000
TMPRSS13   4830000 perm   11818 sec   (409 perm/sec)   p_kst 5.111387e-03   p_cons 2.209110e-03   p_joint 1.619048e-04

Joint ci ratio: 1.398104e-01	ci left: 1.510420e-04	ci right 1.739432e-04	k: 785	n:4840000
Cons ci ratio: 3.786834e-02	ci left: 2.167254e-03	ci right 2.251111e-03	k: 10691	n:4840000
KS ci ratio: 2.485235e-02	ci left: 5.050490e-03	ci right 5.177789e-03	k: 24751	n:4840000
TMPRSS13   4840000 perm   11863 sec   (408 perm/sec)   p_kst 5.113843e-03   p_cons 2.208884e-03   p_joint 1.621901e-04

Joint ci ratio: 1.398104e-01	ci left: 1.507306e-04	ci right 1.735845e-04	k: 785	n:4850000
Cons ci ratio: 3.783652e-02	ci left: 2.166462e-03	ci right 2.250216e-03	k: 10709	n:4850000
KS ci ratio: 2.482528e-02	ci left: 5.051142e-03	ci right 5.178316e-03	k: 24805	n:4850000
TMPRSS13   4850000 perm   11908 sec   (407 perm/sec)   p_kst 5.114433e-03   p_cons 2.208041e-03   p_joint 1.618557e-04

Joint ci ratio: 1.397216e-01	ci left: 1.506190e-04	ci right 1.734403e-04	k: 786	n:4860000
Cons ci ratio: 3.779949e-02	ci left: 2.166284e-03	ci right 2.249948e-03	k: 10730	n:4860000
KS ci ratio: 2.480331e-02	ci left: 5.049746e-03	ci right 5.176771e-03	k: 24849	n:4860000
TMPRSS13   4860000 perm   11953 sec   (407 perm/sec)   p_kst 5.112963e-03   p_cons 2.207819e-03   p_joint 1.617284e-04

Joint ci ratio: 1.394560e-01	ci left: 1.509042e-04	ci right 1.737217e-04	k: 789	n:4870000
Cons ci ratio: 3.776080e-02	ci left: 2.166311e-03	ci right 2.249888e-03	k: 10752	n:4870000
KS ci ratio: 2.477890e-02	ci left: 5.049376e-03	ci right 5.176265e-03	k: 24898	n:4870000
TMPRSS13   4870000 perm   11997 sec   (406 perm/sec)   p_kst 5.112526e-03   p_cons 2.207803e-03   p_joint 1.620123e-04

Joint ci ratio: 1.393678e-01	ci left: 1.507927e-04	ci right 1.735778e-04	k: 790	n:4880000
Cons ci ratio: 3.771522e-02	ci left: 2.167149e-03	ci right 2.250656e-03	k: 10778	n:4880000
KS ci ratio: 2.475406e-02	ci left: 5.049211e-03	ci right 5.175967e-03	k: 24948	n:4880000
TMPRSS13   4880000 perm   12044 sec   (405 perm/sec)   p_kst 5.112295e-03   p_cons 2.208607e-03   p_joint 1.618852e-04

Joint ci ratio: 1.392798e-01	ci left: 1.506817e-04	ci right 1.734344e-04	k: 791	n:4890000
Cons ci ratio: 3.768378e-02	ci left: 2.166364e-03	ci right 2.249769e-03	k: 10796	n:4890000
KS ci ratio: 2.473128e-02	ci left: 5.048234e-03	ci right 5.174848e-03	k: 24994	n:4890000
TMPRSS13   4890000 perm   12090 sec   (404 perm/sec)   p_kst 5.111247e-03   p_cons 2.207771e-03   p_joint 1.617587e-04

Joint ci ratio: 1.389294e-01	ci left: 1.511622e-04	ci right 1.739252e-04	k: 795	n:4900000
Cons ci ratio: 3.765243e-02	ci left: 2.165582e-03	ci right 2.248886e-03	k: 10814	n:4900000
KS ci ratio: 2.470015e-02	ci left: 5.050710e-03	ci right 5.177223e-03	k: 25057	n:4900000
TMPRSS13   4900000 perm   12136 sec   (404 perm/sec)   p_kst 5.113673e-03   p_cons 2.206939e-03   p_joint 1.622449e-04

Joint ci ratio: 1.387552e-01	ci left: 1.512475e-04	ci right 1.739924e-04	k: 797	n:4910000
Cons ci ratio: 3.761245e-02	ci left: 2.165811e-03	ci right 2.249034e-03	k: 10837	n:4910000
KS ci ratio: 2.467653e-02	ci left: 5.050139e-03	ci right 5.176515e-03	k: 25105	n:4910000
TMPRSS13   4910000 perm   12186 sec   (403 perm/sec)   p_kst 5.113035e-03   p_cons 2.207128e-03   p_joint 1.623218e-04

Joint ci ratio: 1.386684e-01	ci left: 1.511363e-04	ci right 1.738491e-04	k: 798	n:4920000
Cons ci ratio: 3.756913e-02	ci left: 2.166443e-03	ci right 2.249592e-03	k: 10862	n:4920000
KS ci ratio: 2.465249e-02	ci left: 5.049772e-03	ci right 5.176015e-03	k: 25154	n:4920000
TMPRSS13   4920000 perm   12238 sec   (402 perm/sec)   p_kst 5.112602e-03   p_cons 2.207724e-03   p_joint 1.621951e-04

Joint ci ratio: 1.384951e-01	ci left: 1.512213e-04	ci right 1.739162e-04	k: 800	n:4930000
Cons ci ratio: 3.751733e-02	ci left: 2.168077e-03	ci right 2.251171e-03	k: 10892	n:4930000
KS ci ratio: 2.463196e-02	ci left: 5.047996e-03	ci right 5.174087e-03	k: 25196	n:4930000
TMPRSS13   4930000 perm   12286 sec   (401 perm/sec)   p_kst 5.110751e-03   p_cons 2.209331e-03   p_joint 1.622718e-04

Joint ci ratio: 1.382365e-01	ci left: 1.515015e-04	ci right 1.741924e-04	k: 803	n:4940000
Cons ci ratio: 3.748467e-02	ci left: 2.167498e-03	ci right 2.250496e-03	k: 10911	n:4940000
KS ci ratio: 2.461148e-02	ci left: 5.046227e-03	ci right 5.172168e-03	k: 25238	n:4940000
TMPRSS13   4940000 perm   12333 sec   (401 perm/sec)   p_kst 5.108907e-03   p_cons 2.208704e-03   p_joint 1.625506e-04

Joint ci ratio: 1.382365e-01	ci left: 1.511954e-04	ci right 1.738405e-04	k: 803	n:4950000
Cons ci ratio: 3.744694e-02	ci left: 2.167522e-03	ci right 2.250436e-03	k: 10933	n:4950000
KS ci ratio: 2.458274e-02	ci left: 5.047878e-03	ci right 5.173712e-03	k: 25297	n:4950000
TMPRSS13   4950000 perm   12382 sec   (400 perm/sec)   p_kst 5.110505e-03   p_cons 2.208687e-03   p_joint 1.622222e-04

Joint ci ratio: 1.378086e-01	ci left: 1.518638e-04	ci right 1.745329e-04	k: 808	n:4960000
Cons ci ratio: 3.740761e-02	ci left: 2.167746e-03	ci right 2.250579e-03	k: 10956	n:4960000
KS ci ratio: 2.455897e-02	ci left: 5.047520e-03	ci right 5.173220e-03	k: 25346	n:4960000
TMPRSS13   4960000 perm   12430 sec   (399 perm/sec)   p_kst 5.110081e-03   p_cons 2.208871e-03   p_joint 1.629032e-04

Joint ci ratio: 1.377235e-01	ci left: 1.517525e-04	ci right 1.743898e-04	k: 809	n:4970000
Cons ci ratio: 3.735477e-02	ci left: 2.169563e-03	ci right 2.252347e-03	k: 10987	n:4970000
KS ci ratio: 2.453382e-02	ci left: 5.047762e-03	ci right 5.173339e-03	k: 25398	n:4970000
TMPRSS13   4970000 perm   12482 sec   (398 perm/sec)   p_kst 5.110262e-03   p_cons 2.210664e-03   p_joint 1.627767e-04

Joint ci ratio: 1.377235e-01	ci left: 1.514478e-04	ci right 1.740397e-04	k: 809	n:4980000
Cons ci ratio: 3.732253e-02	ci left: 2.168986e-03	ci right 2.251675e-03	k: 11006	n:4980000
KS ci ratio: 2.451697e-02	ci left: 5.044611e-03	ci right 5.170022e-03	k: 25433	n:4980000
TMPRSS13   4980000 perm   12531 sec   (397 perm/sec)   p_kst 5.107028e-03   p_cons 2.210040e-03   p_joint 1.624498e-04

Joint ci ratio: 1.377236e-01	ci left: 1.511443e-04	ci right 1.736909e-04	k: 809	n:4990000
Cons ci ratio: 3.729037e-02	ci left: 2.168412e-03	ci right 2.251005e-03	k: 11025	n:4990000
KS ci ratio: 2.449001e-02	ci left: 5.045655e-03	ci right 5.170952e-03	k: 25489	n:4990000
TMPRSS13   4990000 perm   12578 sec   (397 perm/sec)   p_kst 5.108016e-03   p_cons 2.209419e-03   p_joint 1.621242e-04

Joint ci ratio: 1.380650e-01	ci left: 1.500696e-04	ci right 1.725159e-04	k: 805	n:5000000
Cons ci ratio: 3.725153e-02	ci left: 2.168632e-03	ci right 2.251146e-03	k: 11048	n:5000000
KS ci ratio: 2.446507e-02	ci left: 5.045900e-03	ci right 5.171074e-03	k: 25541	n:5000000
TMPRSS13   5000000 perm   12626 sec   (396 perm/sec)   p_kst 5.108200e-03   p_cons 2.209600e-03   p_joint 1.610000e-04

Outputting figure to mutsig2_images.part000000000178/TMPRSS13.4_1756_5000000_0.0051082_0.0022096_0.000161.png
                gene_name: TMPRSS13
               theta_stop: 0.14 
                    nperm: 5000000 
                     p_ks: 0.0051 
        ci_ks_bounds_left: 0.0050 
       ci_ks_bounds_right: 0.0052 
                   p_cons: 0.0022 
      ci_cons_bounds_left: 0.0022 
     ci_cons_bounds_right: 0.0023 
                  p_joint: 0.00016 
     ci_joint_bounds_left: 0.00015 
    ci_joint_bounds_right: 0.00017 

Current progress: 36 percent done.
TMEM48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.628658e-02	ci left: 2.504348e-01	ci right 2.677057e-01	k: 2590	n:10000
Cons ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
KS ci ratio: 4.838285e-02	ci left: 3.865951e-01	ci right 4.058654e-01	k: 3962	n:10000
TMEM48   10000 perm   2 sec   (5732 perm/sec)   p_kst 3.962000e-01   p_cons 1.072000e-01   p_joint 2.590000e-01

Joint ci ratio: 3.656453e-02	ci left: 3.582233e-01	ci right 3.716160e-01	k: 7298	n:20000
Cons ci ratio: 7.999126e-02	ci left: 1.028957e-01	ci right 1.115189e-01	k: 2143	n:20000
KS ci ratio: 3.454270e-02	ci left: 3.848763e-01	ci right 3.984552e-01	k: 7833	n:20000
TMEM48   20000 perm   4 sec   (5066 perm/sec)   p_kst 3.916500e-01   p_cons 1.071500e-01   p_joint 3.649000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM48.3_2097_20000_0.39165_0.10715_0.3649.png
                gene_name: TMEM48
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 38 percent done.
TMEM62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.056233e-02	ci left: 6.123115e-01	ci right 6.314175e-01	k: 6219	n:10000
Cons ci ratio: 5.442180e-02	ci left: 3.322029e-01	ci right 3.508895e-01	k: 3415	n:10000
KS ci ratio: 3.199653e-02	ci left: 5.904206e-01	ci right 6.097211e-01	k: 6001	n:10000
TMEM62   10000 perm   2 sec   (5380 perm/sec)   p_kst 6.001000e-01   p_cons 3.415000e-01   p_joint 6.219000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM62.3_1988_10000_0.6001_0.3415_0.6219.png
                gene_name: TMEM62
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 40 percent done.
TMEM63C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.328347e-02	ci left: 7.304755e-01	ci right 7.477850e-01	k: 7392	n:10000
KS ci ratio: 2.785170e-02	ci left: 6.551489e-01	ci right 6.737553e-01	k: 6645	n:10000
TMEM63C   10000 perm   2 sec   (5307 perm/sec)   p_kst 6.645000e-01   p_cons 7.392000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMEM63C.3_2509_10000_0.6645_0.7392_1.png
                gene_name: TMEM63C
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
TMEM71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.710826e-02	ci left: 1.610145e-01	ci right 1.757792e-01	k: 1683	n:10000
Cons ci ratio: 3.690941e-02	ci left: 5.201603e-01	ci right 5.398222e-01	k: 5300	n:10000
KS ci ratio: 1.273839e-01	ci left: 8.096444e-02	ci right 9.207781e-02	k: 864	n:10000
TMEM71   10000 perm   1 sec   (6885 perm/sec)   p_kst 8.640000e-02   p_cons 5.300000e-01   p_joint 1.683000e-01

Joint ci ratio: 4.569311e-02	ci left: 2.628136e-01	ci right 2.751536e-01	k: 5379	n:20000
Cons ci ratio: 2.607190e-02	ci left: 5.236044e-01	ci right 5.374867e-01	k: 10611	n:20000
KS ci ratio: 8.821853e-02	ci left: 8.587260e-02	ci right 9.384710e-02	k: 1796	n:20000
TMEM71   20000 perm   3 sec   (6006 perm/sec)   p_kst 8.980000e-02   p_cons 5.305500e-01   p_joint 2.689500e-01

Outputting figure to mutsig2_images.part000000000178/TMEM71.3_924_20000_0.0898_0.53055_0.26895.png
                gene_name: TMEM71
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.090 
        ci_ks_bounds_left: 0.086 
       ci_ks_bounds_right: 0.094 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 45 percent done.
TMEM86A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.146546e-02	ci left: 1.802855e-01	ci right 1.956967e-01	k: 1879	n:10000
Cons ci ratio: 1.962522e-02	ci left: 7.916175e-01	ci right 8.074076e-01	k: 7996	n:10000
KS ci ratio: 1.388648e-01	ci left: 6.865367e-02	ci right 7.899624e-02	k: 737	n:10000
TMEM86A   10000 perm   1 sec   (6688 perm/sec)   p_kst 7.370000e-02   p_cons 7.996000e-01   p_joint 1.879000e-01

Joint ci ratio: 5.839100e-02	ci left: 1.785028e-01	ci right 1.892893e-01	k: 3677	n:20000
Cons ci ratio: 1.377940e-02	ci left: 7.962570e-01	ci right 8.073551e-01	k: 16037	n:20000
KS ci ratio: 1.013426e-01	ci left: 6.606220e-02	ci right 7.316354e-02	k: 1391	n:20000
TMEM86A   20000 perm   3 sec   (5724 perm/sec)   p_kst 6.955000e-02   p_cons 8.018500e-01   p_joint 1.838500e-01

Joint ci ratio: 5.395227e-02	ci left: 1.455813e-01	ci right 1.536867e-01	k: 4488	n:30000
Cons ci ratio: 1.123718e-02	ci left: 7.976802e-01	ci right 8.067279e-01	k: 24067	n:30000
KS ci ratio: 8.449954e-02	ci left: 6.409812e-02	ci right 6.978610e-02	k: 2007	n:30000
TMEM86A   30000 perm   6 sec   (5437 perm/sec)   p_kst 6.690000e-02   p_cons 8.022333e-01   p_joint 1.496000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM86A.3_735_30000_0.0669_0.80223_0.1496.png
                gene_name: TMEM86A
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 48 percent done.
TMIGD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.612182e-02	ci left: 3.186009e-01	ci right 3.370994e-01	k: 3278	n:10000
Cons ci ratio: 8.732284e-03	ci left: 9.484598e-01	ci right 9.568740e-01	k: 9528	n:10000
KS ci ratio: 1.210554e-01	ci left: 8.912712e-02	ci right 1.007101e-01	k: 948	n:10000
TMIGD2   10000 perm   2 sec   (6260 perm/sec)   p_kst 9.480000e-02   p_cons 9.528000e-01   p_joint 3.278000e-01

Joint ci ratio: 5.701803e-02	ci left: 1.856713e-01	ci right 1.966187e-01	k: 3822	n:20000
Cons ci ratio: 6.068484e-03	ci left: 9.513140e-01	ci right 9.571530e-01	k: 19086	n:20000
KS ci ratio: 8.648459e-02	ci left: 8.910730e-02	ci right 9.721143e-02	k: 1862	n:20000
TMIGD2   20000 perm   4 sec   (5441 perm/sec)   p_kst 9.310000e-02   p_cons 9.543000e-01   p_joint 1.911000e-01

Outputting figure to mutsig2_images.part000000000178/TMIGD2.3_869_20000_0.0931_0.9543_0.1911.png
                gene_name: TMIGD2
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.089 
       ci_ks_bounds_right: 0.097 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 50 percent done.
TMLHE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.473772e-02	ci left: 8.695851e-01	ci right 8.825950e-01	k: 8762	n:10000
Cons ci ratio: 3.354587e-02	ci left: 5.674464e-01	ci right 5.869086e-01	k: 5772	n:10000
KS ci ratio: 2.999325e-02	ci left: 6.211539e-01	ci right 6.401699e-01	k: 6307	n:10000
TMLHE   10000 perm   2 sec   (5892 perm/sec)   p_kst 6.307000e-01   p_cons 5.772000e-01   p_joint 8.762000e-01

Outputting figure to mutsig2_images.part000000000178/TMLHE.3_1434_10000_0.6307_0.5772_0.8762.png
                gene_name: TMLHE
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 52 percent done.
TMOD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.918069e-02	ci left: 3.788311e-01	ci right 3.980340e-01	k: 3884	n:10000
Cons ci ratio: 1.613966e-01	ci left: 5.118874e-02	ci right 6.027224e-02	k: 556	n:10000
KS ci ratio: 3.353212e-02	ci left: 5.676469e-01	ci right 5.871080e-01	k: 5774	n:10000
TMOD1   10000 perm   2 sec   (5907 perm/sec)   p_kst 5.774000e-01   p_cons 5.560000e-02   p_joint 3.884000e-01

Joint ci ratio: 5.832301e-02	ci left: 1.788488e-01	ci right 1.896432e-01	k: 3684	n:20000
Cons ci ratio: 1.344817e-01	ci left: 3.800349e-02	ci right 4.353104e-02	k: 814	n:20000
KS ci ratio: 2.418183e-02	ci left: 5.609000e-01	ci right 5.746802e-01	k: 11356	n:20000
TMOD1   20000 perm   4 sec   (5100 perm/sec)   p_kst 5.678000e-01   p_cons 4.070000e-02   p_joint 1.842000e-01

Joint ci ratio: 2.530431e-02	ci left: 4.387661e-01	ci right 4.500447e-01	k: 13332	n:30000
Cons ci ratio: 1.105372e-01	ci left: 3.800521e-02	ci right 4.248439e-02	k: 1206	n:30000
KS ci ratio: 1.955105e-02	ci left: 5.670119e-01	ci right 5.782407e-01	k: 17179	n:30000
TMOD1   30000 perm   6 sec   (4901 perm/sec)   p_kst 5.726333e-01   p_cons 4.020000e-02   p_joint 4.444000e-01

Joint ci ratio: 2.209961e-02	ci left: 4.353772e-01	ci right 4.451315e-01	k: 17610	n:40000
Cons ci ratio: 9.530756e-02	ci left: 3.863795e-02	ci right 4.252911e-02	k: 1622	n:40000
KS ci ratio: 1.683464e-02	ci left: 5.705884e-01	ci right 5.803007e-01	k: 23018	n:40000
TMOD1   40000 perm   8 sec   (4757 perm/sec)   p_kst 5.754500e-01   p_cons 4.055000e-02   p_joint 4.402500e-01

Outputting figure to mutsig2_images.part000000000178/TMOD1.3_1116_40000_0.57545_0.04055_0.44025.png
                gene_name: TMOD1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 55 percent done.
TMPRSS11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.499402e-02	ci left: 1.385451e-01	ci right 1.524621e-01	k: 1454	n:10000
Cons ci ratio: 1.606061e-02	ci left: 8.492710e-01	ci right 8.631208e-01	k: 8563	n:10000
KS ci ratio: 2.025482e-01	ci left: 3.243447e-02	ci right 3.983893e-02	k: 360	n:10000
TMPRSS11B   10000 perm   2 sec   (6013 perm/sec)   p_kst 3.600000e-02   p_cons 8.563000e-01   p_joint 1.454000e-01

Joint ci ratio: 6.698357e-02	ci left: 1.412809e-01	ci right 1.511222e-01	k: 2923	n:20000
Cons ci ratio: 1.117293e-02	ci left: 8.553673e-01	ci right 8.650277e-01	k: 17205	n:20000
KS ci ratio: 1.458670e-01	ci left: 3.230283e-02	ci right 3.743355e-02	k: 696	n:20000
TMPRSS11B   20000 perm   4 sec   (5239 perm/sec)   p_kst 3.480000e-02   p_cons 8.602500e-01   p_joint 1.461500e-01

Joint ci ratio: 5.129748e-02	ci left: 1.587375e-01	ci right 1.671279e-01	k: 4887	n:30000
Cons ci ratio: 9.126858e-03	ci left: 8.561569e-01	ci right 8.640399e-01	k: 25804	n:30000
KS ci ratio: 1.216245e-01	ci left: 3.142775e-02	ci right 3.552991e-02	k: 1003	n:30000
TMPRSS11B   30000 perm   6 sec   (4884 perm/sec)   p_kst 3.343333e-02   p_cons 8.601333e-01   p_joint 1.629000e-01

Joint ci ratio: 5.392259e-02	ci left: 1.135443e-01	ci right 1.198614e-01	k: 4667	n:40000
Cons ci ratio: 8.246007e-03	ci left: 8.460843e-01	ci right 8.531149e-01	k: 33985	n:40000
KS ci ratio: 1.052760e-01	ci left: 3.173371e-02	ci right 3.528444e-02	k: 1339	n:40000
TMPRSS11B   40000 perm   9 sec   (4583 perm/sec)   p_kst 3.347500e-02   p_cons 8.496250e-01   p_joint 1.166750e-01

Joint ci ratio: 4.741038e-02	ci left: 1.174211e-01	ci right 1.231431e-01	k: 6013	n:50000
Cons ci ratio: 7.076934e-03	ci left: 8.568066e-01	ci right 8.629116e-01	k: 42994	n:50000
KS ci ratio: 9.442476e-02	ci left: 3.174450e-02	ci right 3.490999e-02	k: 1665	n:50000
TMPRSS11B   50000 perm   11 sec   (4484 perm/sec)   p_kst 3.330000e-02   p_cons 8.598800e-01   p_joint 1.202600e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS11B.3_1291_50000_0.0333_0.85988_0.12026.png
                gene_name: TMPRSS11B
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 57 percent done.
TMPRSS11F
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.502819e-02	ci left: 8.651913e-01	ci right 8.783912e-01	k: 8719	n:10000
Cons ci ratio: 3.052986e-02	ci left: 6.128138e-01	ci right 6.319149e-01	k: 6224	n:10000
KS ci ratio: 4.825167e-02	ci left: 3.878893e-01	ci right 4.071704e-01	k: 3975	n:10000
TMPRSS11F   10000 perm   2 sec   (6280 perm/sec)   p_kst 3.975000e-01   p_cons 6.224000e-01   p_joint 8.719000e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS11F.3_1357_10000_0.3975_0.6224_0.8719.png
                gene_name: TMPRSS11F
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 60 percent done.
TMPRSS12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.261589e-02	ci left: 9.003168e-01	ci right 9.118454e-01	k: 9062	n:10000
KS ci ratio: 2.049103e-02	ci left: 7.772209e-01	ci right 7.934125e-01	k: 7854	n:10000
TMPRSS12   10000 perm   2 sec   (5763 perm/sec)   p_kst 7.854000e-01   p_cons 9.062000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMPRSS12.3_1067_10000_0.7854_0.9062_1.png
                gene_name: TMPRSS12
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
TMEM38A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.309951e-02	ci left: 8.935428e-01	ci right 9.054233e-01	k: 8996	n:10000
Cons ci ratio: 3.731880e-02	ci left: 5.146560e-01	ci right 5.343297e-01	k: 5245	n:10000
KS ci ratio: 4.808088e-02	ci left: 3.895819e-01	ci right 4.088768e-01	k: 3992	n:10000
TMEM38A   10000 perm   2 sec   (6593 perm/sec)   p_kst 3.992000e-01   p_cons 5.245000e-01   p_joint 8.996000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM38A.2_924_10000_0.3992_0.5245_0.8996.png
                gene_name: TMEM38A
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 64 percent done.
TMEM38B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.981334e-03	ci left: 9.457535e-01	ci right 9.543819e-01	k: 9502	n:10000
Cons ci ratio: 2.369416e-02	ci left: 7.236062e-01	ci right 7.410582e-01	k: 7324	n:10000
KS ci ratio: 1.586443e-02	ci left: 8.523304e-01	ci right 8.660597e-01	k: 8593	n:10000
TMEM38B   10000 perm   1 sec   (6777 perm/sec)   p_kst 8.593000e-01   p_cons 7.324000e-01   p_joint 9.502000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM38B.2_900_10000_0.8593_0.7324_0.9502.png
                gene_name: TMEM38B
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 67 percent done.
TMEM41B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.714031e-01	ci left: 4.542628e-02	ci right 5.403844e-02	k: 496	n:10000
Cons ci ratio: 1.165621e-01	ci left: 9.564778e-02	ci right 1.075854e-01	k: 1015	n:10000
KS ci ratio: 2.005397e-01	ci left: 3.310027e-02	ci right 4.057267e-02	k: 367	n:10000
TMEM41B   10000 perm   2 sec   (6495 perm/sec)   p_kst 3.670000e-02   p_cons 1.015000e-01   p_joint 4.960000e-02

Joint ci ratio: 1.676740e-01	ci left: 2.436600e-02	ci right 2.887305e-02	k: 531	n:20000
Cons ci ratio: 8.103225e-02	ci left: 1.004895e-01	ci right 1.090258e-01	k: 2094	n:20000
KS ci ratio: 1.399415e-01	ci left: 3.510267e-02	ci right 4.043280e-02	k: 754	n:20000
TMEM41B   20000 perm   3 sec   (5761 perm/sec)   p_kst 3.770000e-02   p_cons 1.047000e-01   p_joint 2.655000e-02

Joint ci ratio: 1.449437e-01	ci left: 2.207259e-02	ci right 2.555380e-02	k: 713	n:30000
Cons ci ratio: 6.527890e-02	ci left: 1.037864e-01	ci right 1.108232e-01	k: 3218	n:30000
KS ci ratio: 1.141841e-01	ci left: 3.563770e-02	ci right 3.998573e-02	k: 1133	n:30000
TMEM41B   30000 perm   5 sec   (5466 perm/sec)   p_kst 3.776667e-02   p_cons 1.072667e-01   p_joint 2.376667e-02

Joint ci ratio: 1.210418e-01	ci left: 2.400146e-02	ci right 2.711794e-02	k: 1021	n:40000
Cons ci ratio: 5.654075e-02	ci left: 1.042337e-01	ci right 1.103234e-01	k: 4290	n:40000
KS ci ratio: 9.881879e-02	ci left: 3.597658e-02	ci right 3.974090e-02	k: 1513	n:40000
TMEM41B   40000 perm   8 sec   (5283 perm/sec)   p_kst 3.782500e-02   p_cons 1.072500e-01   p_joint 2.552500e-02

Joint ci ratio: 1.148197e-01	ci left: 2.147054e-02	ci right 2.410527e-02	k: 1138	n:50000
Cons ci ratio: 5.013691e-02	ci left: 1.062021e-01	ci right 1.116834e-01	k: 5446	n:50000
KS ci ratio: 8.921028e-02	ci left: 3.551894e-02	ci right 3.885507e-02	k: 1858	n:50000
TMEM41B   50000 perm   10 sec   (5118 perm/sec)   p_kst 3.716000e-02   p_cons 1.089200e-01   p_joint 2.276000e-02

Joint ci ratio: 1.098471e-01	ci left: 1.964052e-02	ci right 2.193949e-02	k: 1246	n:60000
Cons ci ratio: 4.580162e-02	ci left: 1.063026e-01	ci right 1.113020e-01	k: 6527	n:60000
KS ci ratio: 8.128257e-02	ci left: 3.579783e-02	ci right 3.884714e-02	k: 2238	n:60000
TMEM41B   60000 perm   12 sec   (4975 perm/sec)   p_kst 3.730000e-02   p_cons 1.087833e-01   p_joint 2.076667e-02

Joint ci ratio: 9.425326e-02	ci left: 2.297653e-02	ci right 2.526315e-02	k: 1687	n:70000
Cons ci ratio: 4.244789e-02	ci left: 1.062901e-01	ci right 1.109139e-01	k: 7601	n:70000
KS ci ratio: 7.534555e-02	ci left: 3.582412e-02	ci right 3.864297e-02	k: 2605	n:70000
TMEM41B   70000 perm   14 sec   (4851 perm/sec)   p_kst 3.721429e-02   p_cons 1.085857e-01   p_joint 2.410000e-02

Outputting figure to mutsig2_images.part000000000178/TMEM41B.2_920_70000_0.037214_0.10859_0.0241.png
                gene_name: TMEM41B
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 69 percent done.
TMEM42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.090974e-02	ci left: 7.702306e-01	ci right 7.866069e-01	k: 7785	n:10000
KS ci ratio: 2.825866e-02	ci left: 6.486074e-01	ci right 6.673005e-01	k: 6580	n:10000
TMEM42   10000 perm   1 sec   (6982 perm/sec)   p_kst 6.580000e-01   p_cons 7.785000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMEM42.2_492_10000_0.658_0.7785_1.png
                gene_name: TMEM42
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
TMEM45B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.851041e-02	ci left: 4.989503e-01	ci right 5.186445e-01	k: 5088	n:10000
Cons ci ratio: 6.078901e-02	ci left: 2.846853e-01	ci right 3.026351e-01	k: 2936	n:10000
KS ci ratio: 1.566719e-02	ci left: 8.553907e-01	ci right 8.689975e-01	k: 8623	n:10000
TMEM45B   10000 perm   1 sec   (6743 perm/sec)   p_kst 8.623000e-01   p_cons 2.936000e-01   p_joint 5.088000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM45B.2_848_10000_0.8623_0.2936_0.5088.png
                gene_name: TMEM45B
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 74 percent done.
TMEM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.216596e-02	ci left: 9.064824e-01	ci right 9.176761e-01	k: 9122	n:10000
KS ci ratio: 2.292136e-02	ci left: 7.365388e-01	ci right 7.537181e-01	k: 7452	n:10000
TMEM5   10000 perm   2 sec   (6009 perm/sec)   p_kst 7.452000e-01   p_cons 9.122000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMEM5.2_1356_10000_0.7452_0.9122_1.png
                gene_name: TMEM5
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
TMEM50A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.703560e-03	ci left: 9.833923e-01	ci right 9.881185e-01	k: 9859	n:10000
Cons ci ratio: 8.276858e-03	ci left: 9.532564e-01	ci right 9.612745e-01	k: 9574	n:10000
KS ci ratio: 2.627951e-02	ci left: 6.807302e-01	ci right 6.989591e-01	k: 6899	n:10000
TMEM50A   10000 perm   1 sec   (6714 perm/sec)   p_kst 6.899000e-01   p_cons 9.574000e-01   p_joint 9.859000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM50A.2_498_10000_0.6899_0.9574_0.9859.png
                gene_name: TMEM50A
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 79 percent done.
TMEM51
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.146020e-02	ci left: 3.576425e-01	ci right 3.766349e-01	k: 3671	n:10000
Cons ci ratio: 4.215023e-02	ci left: 4.538878e-01	ci right 4.735333e-01	k: 4637	n:10000
KS ci ratio: 8.558480e-02	ci left: 1.659274e-01	ci right 1.808634e-01	k: 1733	n:10000
TMEM51   10000 perm   1 sec   (6671 perm/sec)   p_kst 1.733000e-01   p_cons 4.637000e-01   p_joint 3.671000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM51.2_770_10000_0.1733_0.4637_0.3671.png
                gene_name: TMEM51
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 81 percent done.
TMEM55B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.086731e-02	ci left: 7.709396e-01	ci right 7.872974e-01	k: 7792	n:10000
Cons ci ratio: 1.520250e-02	ci left: 8.625359e-01	ci right 8.758482e-01	k: 8693	n:10000
KS ci ratio: 4.160355e-02	ci left: 4.603775e-01	ci right 4.800399e-01	k: 4702	n:10000
TMEM55B   10000 perm   2 sec   (6497 perm/sec)   p_kst 4.702000e-01   p_cons 8.693000e-01   p_joint 7.792000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM55B.2_883_10000_0.4702_0.8693_0.7792.png
                gene_name: TMEM55B
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 83 percent done.
TMEM65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.757973e-01	ci left: 1.706687e-02	ci right 2.261782e-02	k: 197	n:10000
Cons ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
KS ci ratio: 5.200715e-02	ci left: 3.527710e-01	ci right 3.717094e-01	k: 3622	n:10000
TMEM65   10000 perm   2 sec   (6493 perm/sec)   p_kst 3.622000e-01   p_cons 1.030000e-02   p_joint 1.970000e-02

Joint ci ratio: 1.631610e-01	ci left: 2.575746e-02	ci right 3.038111e-02	k: 560	n:20000
Cons ci ratio: 2.622204e-01	ci left: 9.600898e-03	ci right 1.254384e-02	k: 220	n:20000
KS ci ratio: 3.715554e-02	ci left: 3.508540e-01	ci right 3.641875e-01	k: 7150	n:20000
TMEM65   20000 perm   4 sec   (5664 perm/sec)   p_kst 3.575000e-01   p_cons 1.100000e-02   p_joint 2.800000e-02

Joint ci ratio: 1.637964e-01	ci left: 1.719719e-02	ci right 2.029700e-02	k: 561	n:30000
Cons ci ratio: 2.142673e-01	ci left: 9.850602e-03	ci right 1.224550e-02	k: 330	n:30000
KS ci ratio: 3.041564e-02	ci left: 3.509115e-01	ci right 3.617830e-01	k: 10690	n:30000
TMEM65   30000 perm   6 sec   (5315 perm/sec)   p_kst 3.563333e-01   p_cons 1.100000e-02   p_joint 1.870000e-02

Joint ci ratio: 1.050330e-01	ci left: 3.187989e-02	ci right 3.543823e-02	k: 1345	n:40000
Cons ci ratio: 1.856325e-01	ci left: 1.000097e-02	ci right 1.207093e-02	k: 440	n:40000
KS ci ratio: 2.624718e-02	ci left: 3.532749e-01	ci right 3.626958e-01	k: 14319	n:40000
TMEM65   40000 perm   8 sec   (5075 perm/sec)   p_kst 3.579750e-01   p_cons 1.100000e-02   p_joint 3.362500e-02

Joint ci ratio: 1.100215e-01	ci left: 2.339613e-02	ci right 2.613943e-02	k: 1237	n:50000
Cons ci ratio: 1.654670e-01	ci left: 1.018095e-02	ci right 1.203646e-02	k: 554	n:50000
KS ci ratio: 2.339063e-02	ci left: 3.554518e-01	ci right 3.638845e-01	k: 17983	n:50000
TMEM65   50000 perm   10 sec   (4933 perm/sec)   p_kst 3.596600e-01   p_cons 1.108000e-02   p_joint 2.474000e-02

Joint ci ratio: 8.997261e-02	ci left: 2.928520e-02	ci right 3.206044e-02	k: 1839	n:60000
Cons ci ratio: 1.531571e-01	ci left: 9.972321e-03	ci right 1.164217e-02	k: 647	n:60000
KS ci ratio: 2.135479e-02	ci left: 3.557754e-01	ci right 3.634716e-01	k: 21577	n:60000
TMEM65   60000 perm   12 sec   (4805 perm/sec)   p_kst 3.596167e-01   p_cons 1.078333e-02   p_joint 3.065000e-02

Joint ci ratio: 8.410356e-02	ci left: 2.883263e-02	ci right 3.137795e-02	k: 2106	n:70000
Cons ci ratio: 1.417014e-01	ci left: 1.004750e-02	ci right 1.159345e-02	k: 756	n:70000
KS ci ratio: 1.976599e-02	ci left: 3.561721e-01	ci right 3.632967e-01	k: 25181	n:70000
TMEM65   70000 perm   15 sec   (4679 perm/sec)   p_kst 3.597286e-01   p_cons 1.080000e-02   p_joint 3.008571e-02

Joint ci ratio: 7.779341e-02	ci left: 2.956448e-02	ci right 3.196971e-02	k: 2460	n:80000
Cons ci ratio: 1.330279e-01	ci left: 1.002276e-02	ci right 1.146305e-02	k: 858	n:80000
KS ci ratio: 1.849161e-02	ci left: 3.563484e-01	ci right 3.630118e-01	k: 28774	n:80000
TMEM65   80000 perm   18 sec   (4571 perm/sec)   p_kst 3.596750e-01   p_cons 1.072500e-02   p_joint 3.075000e-02

Joint ci ratio: 7.047522e-02	ci left: 3.206087e-02	ci right 3.441378e-02	k: 2990	n:90000
Cons ci ratio: 1.260394e-01	ci left: 9.962721e-03	ci right 1.131354e-02	k: 956	n:90000
KS ci ratio: 1.740083e-02	ci left: 3.574175e-01	ci right 3.637026e-01	k: 32450	n:90000
TMEM65   90000 perm   20 sec   (4467 perm/sec)   p_kst 3.605556e-01   p_cons 1.062222e-02   p_joint 3.322222e-02

Joint ci ratio: 6.958354e-02	ci left: 2.968862e-02	ci right 3.183872e-02	k: 3075	n:100000
Cons ci ratio: 1.189699e-01	ci left: 1.010066e-02	ci right 1.138796e-02	k: 1073	n:100000
KS ci ratio: 1.649452e-02	ci left: 3.579524e-01	ci right 3.639157e-01	k: 36093	n:100000
TMEM65   100000 perm   23 sec   (4370 perm/sec)   p_kst 3.609300e-01   p_cons 1.073000e-02   p_joint 3.075000e-02

Joint ci ratio: 6.650367e-02	ci left: 2.959899e-02	ci right 3.164404e-02	k: 3367	n:110000
Cons ci ratio: 1.143866e-01	ci left: 9.959028e-03	ci right 1.117608e-02	k: 1161	n:110000
KS ci ratio: 1.570845e-02	ci left: 3.586328e-01	ci right 3.643200e-01	k: 39762	n:110000
TMEM65   110000 perm   26 sec   (4275 perm/sec)   p_kst 3.614727e-01   p_cons 1.055455e-02   p_joint 3.060909e-02

Joint ci ratio: 6.458646e-02	ci left: 2.882055e-02	ci right 3.075226e-02	k: 3573	n:120000
Cons ci ratio: 1.102059e-01	ci left: 9.858016e-03	ci right 1.101583e-02	k: 1251	n:120000
KS ci ratio: 1.501660e-02	ci left: 3.594631e-01	ci right 3.649102e-01	k: 43462	n:120000
TMEM65   120000 perm   29 sec   (4177 perm/sec)   p_kst 3.621833e-01   p_cons 1.042500e-02   p_joint 2.977500e-02

Joint ci ratio: 6.456986e-02	ci left: 2.667831e-02	ci right 2.846593e-02	k: 3583	n:130000
Cons ci ratio: 1.063722e-01	ci left: 9.788215e-03	ci right 1.089533e-02	k: 1343	n:130000
KS ci ratio: 1.442170e-02	ci left: 3.597555e-01	ci right 3.649891e-01	k: 47108	n:130000
TMEM65   130000 perm   32 sec   (4092 perm/sec)   p_kst 3.623692e-01   p_cons 1.033077e-02   p_joint 2.756154e-02

Joint ci ratio: 5.967511e-02	ci left: 2.900701e-02	ci right 3.079825e-02	k: 4185	n:140000
Cons ci ratio: 1.023025e-01	ci left: 9.847328e-03	ci right 1.091595e-02	k: 1452	n:140000
KS ci ratio: 1.388202e-02	ci left: 3.603520e-01	ci right 3.653965e-01	k: 50802	n:140000
TMEM65   140000 perm   35 sec   (4023 perm/sec)   p_kst 3.628714e-01   p_cons 1.037143e-02   p_joint 2.989286e-02

Joint ci ratio: 5.759872e-02	ci left: 2.908990e-02	ci right 3.082167e-02	k: 4492	n:150000
Cons ci ratio: 9.876269e-02	ci left: 9.879748e-03	ci right 1.091264e-02	k: 1558	n:150000
KS ci ratio: 1.340276e-02	ci left: 3.607323e-01	ci right 3.656063e-01	k: 54475	n:150000
TMEM65   150000 perm   38 sec   (3960 perm/sec)   p_kst 3.631667e-01   p_cons 1.038667e-02   p_joint 2.994667e-02

Outputting figure to mutsig2_images.part000000000178/TMEM65.2_751_150000_0.36317_0.010387_0.029947.png
                gene_name: TMEM65
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0099 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 86 percent done.
TMEM87B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.185194e-01	ci left: 9.272705e-02	ci right 1.045080e-01	k: 985	n:10000
Cons ci ratio: 1.656929e-01	ci left: 4.859368e-02	ci right 5.746898e-02	k: 529	n:10000
KS ci ratio: 4.460369e-02	ci left: 4.259515e-01	ci right 4.454860e-01	k: 4357	n:10000
TMEM87B   10000 perm   2 sec   (6191 perm/sec)   p_kst 4.357000e-01   p_cons 5.290000e-02   p_joint 9.850000e-02

Joint ci ratio: 8.671576e-02	ci left: 8.866611e-02	ci right 9.675275e-02	k: 1853	n:20000
Cons ci ratio: 1.169904e-01	ci left: 5.003249e-02	ci right 5.629822e-02	k: 1062	n:20000
KS ci ratio: 3.212309e-02	ci left: 4.198813e-01	ci right 4.336400e-01	k: 8535	n:20000
TMEM87B   20000 perm   4 sec   (5250 perm/sec)   p_kst 4.267500e-01   p_cons 5.310000e-02   p_joint 9.265000e-02

Joint ci ratio: 4.355935e-02	ci left: 2.079154e-01	ci right 2.172070e-01	k: 6376	n:30000
Cons ci ratio: 9.627460e-02	ci left: 4.984009e-02	ci right 5.491370e-02	k: 1570	n:30000
KS ci ratio: 2.623543e-02	ci left: 4.210273e-01	ci right 4.322536e-01	k: 12799	n:30000
TMEM87B   30000 perm   6 sec   (4936 perm/sec)   p_kst 4.266333e-01   p_cons 5.233333e-02   p_joint 2.125333e-01

Outputting figure to mutsig2_images.part000000000178/TMEM87B.2_1744_30000_0.42663_0.052333_0.21253.png
                gene_name: TMEM87B
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.050 
     ci_cons_bounds_right: 0.055 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 88 percent done.
TMEM8B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.846609e-02	ci left: 6.452870e-01	ci right 6.640228e-01	k: 6547	n:10000
KS ci ratio: 2.163580e-02	ci left: 7.580813e-01	ci right 7.747632e-01	k: 7665	n:10000
TMEM8B   10000 perm   2 sec   (6103 perm/sec)   p_kst 7.665000e-01   p_cons 6.547000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMEM8B.2_1649_10000_0.7665_0.6547_1.png
                gene_name: TMEM8B
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
TMEM8C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.455374e-02	ci left: 2.606239e-01	ci right 2.781107e-01	k: 2693	n:10000
KS ci ratio: 5.785981e-02	ci left: 3.054047e-01	ci right 3.237035e-01	k: 3145	n:10000
TMEM8C   10000 perm   2 sec   (6420 perm/sec)   p_kst 3.145000e-01   p_cons 2.693000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000178/TMEM8C.2_686_10000_0.3145_0.2693_1.png
                gene_name: TMEM8C
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
TMEM90B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.610159e-02	ci left: 6.836528e-01	ci right 7.018348e-01	k: 6928	n:10000
Cons ci ratio: 8.093572e-02	ci left: 1.822537e-01	ci right 1.977273e-01	k: 1899	n:10000
KS ci ratio: 6.124631e-02	ci left: 2.816139e-01	ci right 2.995082e-01	k: 2905	n:10000
TMEM90B   10000 perm   2 sec   (6492 perm/sec)   p_kst 2.905000e-01   p_cons 1.899000e-01   p_joint 6.928000e-01

Outputting figure to mutsig2_images.part000000000178/TMEM90B.2_789_10000_0.2905_0.1899_0.6928.png
                gene_name: TMEM90B
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 95 percent done.
TMOD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.848532e-02	ci left: 8.103969e-01	ci right 8.256173e-01	k: 8181	n:10000
Cons ci ratio: 1.982702e-02	ci left: 7.882705e-01	ci right 8.041566e-01	k: 7963	n:10000
KS ci ratio: 6.582365e-02	ci left: 2.531052e-01	ci right 2.704338e-01	k: 2617	n:10000
TMOD2   10000 perm   2 sec   (6254 perm/sec)   p_kst 2.617000e-01   p_cons 7.963000e-01   p_joint 8.181000e-01

Outputting figure to mutsig2_images.part000000000178/TMOD2.2_1092_10000_0.2617_0.7963_0.8181.png
                gene_name: TMOD2
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 98 percent done.
TMPRSS11D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.882575e-02	ci left: 6.395531e-01	ci right 6.583601e-01	k: 6490	n:10000
Cons ci ratio: 1.030047e-01	ci left: 1.199465e-01	ci right 1.330719e-01	k: 1264	n:10000
KS ci ratio: 6.760682e-02	ci left: 2.430195e-01	ci right 2.601254e-01	k: 2515	n:10000
TMPRSS11D   10000 perm   2 sec   (6581 perm/sec)   p_kst 2.515000e-01   p_cons 1.264000e-01   p_joint 6.490000e-01

Joint ci ratio: 5.118620e-02	ci left: 2.209123e-01	ci right 2.325672e-01	k: 4534	n:20000
Cons ci ratio: 7.286956e-02	ci left: 1.217750e-01	ci right 1.310339e-01	k: 2527	n:20000
KS ci ratio: 4.778026e-02	ci left: 2.457463e-01	ci right 2.578259e-01	k: 5035	n:20000
TMPRSS11D   20000 perm   4 sec   (5191 perm/sec)   p_kst 2.517500e-01   p_cons 1.263500e-01   p_joint 2.267000e-01

Outputting figure to mutsig2_images.part000000000178/TMPRSS11D.2_1297_20000_0.25175_0.12635_0.2267.png
                gene_name: TMPRSS11D
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000178
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 178 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1530>
Subject: Job 9894184: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1530>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000179> was used as the working directory.
Started at Sat Oct  6 00:33:19 2012
Results reported at Sat Oct  6 04:14:17 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000179.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000179.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 179  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000179.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  14172.79 sec.
    Max Memory :      3659 MB
    Max Swap   :      6006 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
179
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 179
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 179: processing genes 16048 - 16137
Calculating significance of each gene.
Using projection method.
16048	TMPRSS2	8.552513e-01
16049	TMPRSS3	3.779676e-01
16050	TMPRSS4	6.990409e-01
16051	TMPRSS5	3.152107e-01
16052	TMPRSS6	9.574259e-01
16053	TMPRSS7	6.912122e-01
16054	TMPRSS9	8.377284e-01
16055	TMSB10	1
16056	TMSB15A	1.560232e-01
16057	TMSB15B	1
16058	TMSB4X	1
16059	TMSB4Y	1
16060	TMSL3	4.771978e-01
16061	TMTC1	6.081812e-05
16062	TMTC2	1.938140e-01
16063	TMTC3	5.712689e-01
16064	TMTC4	3.917021e-01
16065	TMUB1	1
16066	TMUB2	1
16067	TMX1	3.716156e-01
16068	TMX2	3.259129e-01
16069	TMX3	2.755614e-01
16070	TMX4	5.928892e-01
16071	TNC	9.016554e-02
16072	TNF	1
16073	TNFAIP1	3.707569e-01
16074	TNFAIP2	8.004090e-01
16075	TNFAIP3	5.766209e-01
16076	TNFAIP6	2.124688e-01
16077	TNFAIP8	5.501718e-01
16078	TNFAIP8L1	1
16079	TNFAIP8L2	1
16080	TNFAIP8L3	5.719023e-01
16081	TNFRSF10A	3.944703e-01
16082	TNFRSF10B	2.085093e-01
16083	TNFRSF10C	7.150000e-05
16084	TNFRSF10D	6.898806e-01
16085	TNFRSF11A	5.090293e-01
16086	TNFRSF11B	4.663100e-02
16087	TNFRSF12A	1
16088	TNFRSF13B	1.005346e-01
16089	TNFRSF13C	1
16090	TNFRSF14	1
16091	TNFRSF17	1.553669e-01
16092	TNFRSF18	1
16093	TNFRSF19	5.086294e-01
16094	TNFRSF1A	8.381985e-01
16095	TNFRSF1B	1
16096	TNFRSF21	2.862013e-01
16097	TNFRSF25	1
16098	TNFRSF4	3.965427e-01
16099	TNFRSF6B	1
16100	TNFRSF8	9.212839e-01
16101	TNFRSF9	1.493208e-01
16102	TNFSF10	4.931058e-01
16103	TNFSF11	6.624359e-01
16104	TNFSF12	2.373043e-01
16105	TNFSF12-TNFSF13	1
16106	TNFSF13	1.183475e-01
16107	TNFSF13B	7.172010e-01
16108	TNFSF14	1.798969e-01
16109	TNFSF15	6.837899e-02
16110	TNFSF18	2.572009e-01
16111	TNFSF4	5.162029e-01
16112	TNFSF8	4.107307e-01
16113	TNFSF9	1
16114	TNIK	2.597325e-01
16115	TNIP1	8.529307e-01
16116	TNIP2	1.377211e-01
16117	TNIP3	3.078306e-01
16118	TNK1	5.684089e-01
16119	TNK2	9.974330e-01
16120	TNKS	7.455906e-01
16121	TNKS1BP1	5.467752e-01
16122	TNKS2	6.802050e-02
16123	TNMD	2.028872e-01
16124	TNN	7.333873e-03
16125	TNNC1	1
16126	TNNC2	5.251565e-01
16127	TNNI1	2.331441e-01
16128	TNNI2	1
16129	TNNI3	6.946455e-01
16130	TNNI3K	5.869235e-03
16131	TNNT1	1
16132	TNNT2	6.572002e-02
16133	TNNT3	1
16134	TNP1	2.079843e-01
16135	TNP2	5.414408e-01
16136	TNPO1	1.256339e-01
16137	TNPO2	9.288936e-01
Done

Running MutSig 2:
Scatter job 179: processing genes 16048 - 16137
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TNN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.454932e-02	ci left: 4.265498e-01	ci right 4.460873e-01	k: 4363	n:10000
Cons ci ratio: 1.224168e-02	ci left: 9.054543e-01	ci right 9.167049e-01	k: 9112	n:10000
KS ci ratio: 6.178537e-02	ci left: 2.780479e-01	ci right 2.958764e-01	k: 2869	n:10000
TNN   10000 perm   3 sec   (3473 perm/sec)   p_kst 2.869000e-01   p_cons 9.112000e-01   p_joint 4.363000e-01

Outputting figure to mutsig2_images.part000000000179/TNN.17_3972_10000_0.2869_0.9112_0.4363.png
                gene_name: TNN
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 2 percent done.
TNC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.256777e-02	ci left: 4.489967e-01	ci right 4.686273e-01	k: 4588	n:10000
Cons ci ratio: 8.224759e-02	ci left: 1.774321e-01	ci right 1.927518e-01	k: 1850	n:10000
KS ci ratio: 4.493169e-02	ci left: 4.223619e-01	ci right 4.418776e-01	k: 4321	n:10000
TNC   10000 perm   3 sec   (3329 perm/sec)   p_kst 4.321000e-01   p_cons 1.850000e-01   p_joint 4.588000e-01

Outputting figure to mutsig2_images.part000000000179/TNC.16_6714_10000_0.4321_0.185_0.4588.png
                gene_name: TNC
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 4 percent done.
TMTC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.836104e-02	ci left: 8.124288e-01	ci right 8.275843e-01	k: 8201	n:10000
Cons ci ratio: 2.761474e-02	ci left: 6.589740e-01	ci right 6.775279e-01	k: 6683	n:10000
KS ci ratio: 2.717374e-02	ci left: 6.661229e-01	ci right 6.845749e-01	k: 6754	n:10000
TMTC1   10000 perm   2 sec   (4676 perm/sec)   p_kst 6.754000e-01   p_cons 6.683000e-01   p_joint 8.201000e-01

Outputting figure to mutsig2_images.part000000000179/TMTC1.14_2393_10000_0.6754_0.6683_0.8201.png
                gene_name: TMTC1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 6 percent done.
TNNI3K
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.297800e-01	ci left: 7.814990e-02	ci right 8.909410e-02	k: 835	n:10000
Cons ci ratio: 2.128515e-02	ci left: 7.639523e-01	ci right 7.804888e-01	k: 7723	n:10000
KS ci ratio: 2.076755e-01	ci left: 3.081908e-02	ci right 3.805543e-02	k: 343	n:10000
TNNI3K   10000 perm   2 sec   (4496 perm/sec)   p_kst 3.430000e-02   p_cons 7.723000e-01   p_joint 8.350000e-02

Joint ci ratio: 1.084192e-01	ci left: 5.801445e-02	ci right 6.471377e-02	k: 1226	n:20000
Cons ci ratio: 1.507009e-02	ci left: 7.659699e-01	ci right 7.776510e-01	k: 15437	n:20000
KS ci ratio: 1.432265e-01	ci left: 3.350911e-02	ci right 3.872688e-02	k: 721	n:20000
TNNI3K   20000 perm   5 sec   (4081 perm/sec)   p_kst 3.605000e-02   p_cons 7.718500e-01   p_joint 6.130000e-02

Joint ci ratio: 8.009775e-02	ci left: 7.096438e-02	ci right 7.691845e-02	k: 2217	n:30000
Cons ci ratio: 1.265073e-02	ci left: 7.570720e-01	ci right 7.667439e-01	k: 22858	n:30000
KS ci ratio: 1.140274e-01	ci left: 3.573495e-02	ci right 4.008846e-02	k: 1136	n:30000
TNNI3K   30000 perm   8 sec   (3917 perm/sec)   p_kst 3.786667e-02   p_cons 7.619333e-01   p_joint 7.390000e-02

Joint ci ratio: 6.885703e-02	ci left: 7.236342e-02	ci right 7.754849e-02	k: 2997	n:40000
Cons ci ratio: 1.095082e-02	ci left: 7.578958e-01	ci right 7.662661e-01	k: 30484	n:40000
KS ci ratio: 9.755333e-02	ci left: 3.690411e-02	ci right 4.071322e-02	k: 1551	n:40000
TNNI3K   40000 perm   11 sec   (3802 perm/sec)   p_kst 3.877500e-02   p_cons 7.621000e-01   p_joint 7.492500e-02

Outputting figure to mutsig2_images.part000000000179/TNNI3K.14_2963_40000_0.038775_0.7621_0.074925.png
                gene_name: TNNI3K
               theta_stop: 0.098 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.078 

Current progress: 8 percent done.
TNIK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.874809e-03	ci left: 9.355802e-01	ci right 9.449613e-01	k: 9404	n:10000
KS ci ratio: 1.689963e-02	ci left: 8.360254e-01	ci right 8.503741e-01	k: 8433	n:10000
TNIK   10000 perm   3 sec   (3700 perm/sec)   p_kst 8.433000e-01   p_cons 9.404000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNIK.10_4215_10000_0.8433_0.9404_1.png
                gene_name: TNIK
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
TNKS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.688766e-03	ci left: 9.377569e-01	ci right 9.469833e-01	k: 9425	n:10000
KS ci ratio: 1.434125e-02	ci left: 8.755155e-01	ci right 8.882611e-01	k: 8820	n:10000
TNKS2   10000 perm   3 sec   (3801 perm/sec)   p_kst 8.820000e-01   p_cons 9.425000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNKS2.10_3609_10000_0.882_0.9425_1.png
                gene_name: TNKS2
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
TNPO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.729419e-02	ci left: 8.297144e-01	ci right 8.442887e-01	k: 8371	n:10000
Cons ci ratio: 4.872833e-02	ci left: 3.832104e-01	ci right 4.024520e-01	k: 3928	n:10000
KS ci ratio: 1.784894e-02	ci left: 8.207633e-01	ci right 8.356450e-01	k: 8283	n:10000
TNPO1   10000 perm   2 sec   (4617 perm/sec)   p_kst 8.283000e-01   p_cons 3.928000e-01   p_joint 8.371000e-01

Outputting figure to mutsig2_images.part000000000179/TNPO1.8_2793_10000_0.8283_0.3928_0.8371.png
                gene_name: TNPO1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 15 percent done.
TNKS1BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.284895e-02	ci left: 7.377518e-01	ci right 7.549045e-01	k: 7464	n:10000
Cons ci ratio: 4.190533e-02	ci left: 4.567830e-01	ci right 4.764365e-01	k: 4666	n:10000
KS ci ratio: 2.008940e-02	ci left: 7.839105e-01	ci right 7.999191e-01	k: 7920	n:10000
TNKS1BP1   10000 perm   2 sec   (4105 perm/sec)   p_kst 7.920000e-01   p_cons 4.666000e-01   p_joint 7.464000e-01

Outputting figure to mutsig2_images.part000000000179/TNKS1BP1.7_5230_10000_0.792_0.4666_0.7464.png
                gene_name: TNKS1BP1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 17 percent done.
TMTC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.512432e-02	ci left: 2.058972e-01	ci right 2.220697e-01	k: 2139	n:10000
Cons ci ratio: 3.016084e-02	ci left: 6.185410e-01	ci right 6.375843e-01	k: 6281	n:10000
KS ci ratio: 9.251487e-02	ci left: 1.451135e-01	ci right 1.592898e-01	k: 1521	n:10000
TMTC2   10000 perm   2 sec   (4516 perm/sec)   p_kst 1.521000e-01   p_cons 6.281000e-01   p_joint 2.139000e-01

Outputting figure to mutsig2_images.part000000000179/TMTC2.6_2559_10000_0.1521_0.6281_0.2139.png
                gene_name: TMTC2
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 19 percent done.
TNFRSF10B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.004304e-01	ci left: 1.255214e-01	ci right 1.388936e-01	k: 1321	n:10000
Cons ci ratio: 3.010278e-02	ci left: 6.194455e-01	ci right 6.384793e-01	k: 6290	n:10000
KS ci ratio: 1.640648e-01	ci left: 4.955445e-02	ci right 5.850759e-02	k: 539	n:10000
TNFRSF10B   10000 perm   2 sec   (5539 perm/sec)   p_kst 5.390000e-02   p_cons 6.290000e-01   p_joint 1.321000e-01

Joint ci ratio: 7.532867e-02	ci left: 1.147399e-01	ci right 1.237711e-01	k: 2384	n:20000
Cons ci ratio: 2.162568e-02	ci left: 6.148362e-01	ci right 6.283284e-01	k: 12432	n:20000
KS ci ratio: 1.156747e-01	ci left: 5.115076e-02	ci right 5.747960e-02	k: 1085	n:20000
TNFRSF10B   20000 perm   4 sec   (4858 perm/sec)   p_kst 5.425000e-02   p_cons 6.216000e-01   p_joint 1.192000e-01

Joint ci ratio: 6.652415e-02	ci left: 1.002719e-01	ci right 1.072050e-01	k: 3111	n:30000
Cons ci ratio: 1.804387e-02	ci left: 6.058236e-01	ci right 6.168881e-01	k: 18341	n:30000
KS ci ratio: 9.306719e-02	ci left: 5.322906e-02	ci right 5.845737e-02	k: 1674	n:30000
TNFRSF10B   30000 perm   6 sec   (4618 perm/sec)   p_kst 5.580000e-02   p_cons 6.113667e-01   p_joint 1.037000e-01

Outputting figure to mutsig2_images.part000000000179/TNFRSF10B.6_1359_30000_0.0558_0.61137_0.1037.png
                gene_name: TNFRSF10B
               theta_stop: 0.093 
                    nperm: 30000 
                     p_ks: 0.056 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 21 percent done.
TNFRSF10C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.940154e-01	ci left: 7.872887e-03	ci right 1.182054e-02	k: 97	n:10000
Cons ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
TNFRSF10C   10000 perm   1 sec   (6730 perm/sec)   p_kst 1.000000e-04   p_cons 1   p_joint 9.700000e-03

Joint ci ratio: 3.582663e-01	ci left: 4.885950e-03	ci right 7.061454e-03	k: 118	n:20000
Cons ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
TNFRSF10C   20000 perm   3 sec   (5804 perm/sec)   p_kst 5.000000e-05   p_cons 1   p_joint 5.900000e-03

Joint ci ratio: 3.417378e-01	ci left: 3.621720e-03	ci right 5.143390e-03	k: 130	n:30000
Cons ci ratio: 1.306580e-04	ci left: 9.998770e-01	ci right 1	k: 30000	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
TNFRSF10C   30000 perm   5 sec   (5481 perm/sec)   p_kst 3.333333e-05   p_cons 1   p_joint 4.333333e-03

Joint ci ratio: 3.432433e-01	ci left: 2.693205e-03	ci right 3.830801e-03	k: 129	n:40000
Cons ci ratio: 9.799510e-05	ci left: 9.999078e-01	ci right 1	k: 40000	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
TNFRSF10C   40000 perm   8 sec   (5241 perm/sec)   p_kst 2.500000e-05   p_cons 1   p_joint 3.225000e-03

Joint ci ratio: 3.133581e-01	ci left: 2.631774e-03	ci right 3.627299e-03	k: 155	n:50000
Cons ci ratio: 7.839686e-05	ci left: 9.999262e-01	ci right 1	k: 50000	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
TNFRSF10C   50000 perm   10 sec   (5074 perm/sec)   p_kst 2.000000e-05   p_cons 1   p_joint 3.100000e-03

Joint ci ratio: 3.734115e-01	ci left: 1.491902e-03	ci right 2.191030e-03	k: 109	n:60000
Cons ci ratio: 6.533116e-05	ci left: 9.999385e-01	ci right 1	k: 60000	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
TNFRSF10C   60000 perm   12 sec   (4931 perm/sec)   p_kst 1.666667e-05   p_cons 1   p_joint 1.816667e-03

Joint ci ratio: 3.917171e-01	ci left: 1.149606e-03	ci right 1.721577e-03	k: 99	n:70000
Cons ci ratio: 5.599840e-05	ci left: 9.999473e-01	ci right 1	k: 70000	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
TNFRSF10C   70000 perm   15 sec   (4806 perm/sec)   p_kst 1.428571e-05   p_cons 1   p_joint 1.414286e-03

Joint ci ratio: 3.937285e-01	ci left: 9.946227e-04	ci right 1.492683e-03	k: 98	n:80000
Cons ci ratio: 4.899878e-05	ci left: 9.999539e-01	ci right 1	k: 80000	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
TNFRSF10C   80000 perm   17 sec   (4679 perm/sec)   p_kst 1.250000e-05   p_cons 1   p_joint 1.225000e-03

Joint ci ratio: 4.751876e-01	ci left: 5.769793e-04	ci right 9.453231e-04	k: 67	n:90000
Cons ci ratio: 4.355459e-05	ci left: 9.999590e-01	ci right 1	k: 90000	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
TNFRSF10C   90000 perm   20 sec   (4589 perm/sec)   p_kst 1.111111e-05   p_cons 1   p_joint 7.444444e-04

Joint ci ratio: 4.300952e-01	ci left: 6.522218e-04	ci right 1.017736e-03	k: 82	n:100000
Cons ci ratio: 3.919922e-05	ci left: 9.999631e-01	ci right 1	k: 100000	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
TNFRSF10C   100000 perm   22 sec   (4513 perm/sec)   p_kst 1.000000e-05   p_cons 1   p_joint 8.200000e-04

Joint ci ratio: 4.153492e-01	ci left: 6.416713e-04	ci right 9.855309e-04	k: 88	n:110000
Cons ci ratio: 3.563572e-05	ci left: 9.999665e-01	ci right 1	k: 110000	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
TNFRSF10C   110000 perm   25 sec   (4445 perm/sec)   p_kst 9.090909e-06   p_cons 1   p_joint 8.000000e-04

Joint ci ratio: 4.153633e-01	ci left: 5.881950e-04	ci right 9.034103e-04	k: 88	n:120000
Cons ci ratio: 3.266612e-05	ci left: 9.999693e-01	ci right 1	k: 120000	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
TNFRSF10C   120000 perm   27 sec   (4378 perm/sec)   p_kst 8.333333e-06   p_cons 1   p_joint 7.333333e-04

Joint ci ratio: 4.495217e-01	ci left: 4.538128e-04	ci right 7.231252e-04	k: 75	n:130000
Cons ci ratio: 3.015338e-05	ci left: 9.999716e-01	ci right 1	k: 130000	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
TNFRSF10C   130000 perm   30 sec   (4311 perm/sec)   p_kst 7.692308e-06   p_cons 1   p_joint 5.769231e-04

Joint ci ratio: 4.437274e-01	ci left: 4.340750e-04	ci right 6.873584e-04	k: 77	n:140000
Cons ci ratio: 2.799960e-05	ci left: 9.999737e-01	ci right 1	k: 140000	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
TNFRSF10C   140000 perm   33 sec   (4241 perm/sec)   p_kst 7.142857e-06   p_cons 1   p_joint 5.500000e-04

Joint ci ratio: 4.824109e-01	ci left: 3.344529e-04	ci right 5.522860e-04	k: 65	n:150000
Cons ci ratio: 2.613298e-05	ci left: 9.999754e-01	ci right 1	k: 150000	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
TNFRSF10C   150000 perm   36 sec   (4169 perm/sec)   p_kst 6.666667e-06   p_cons 1   p_joint 4.333333e-04

Joint ci ratio: 4.937748e-01	ci left: 2.971065e-04	ci right 4.967304e-04	k: 62	n:160000
Cons ci ratio: 2.449969e-05	ci left: 9.999769e-01	ci right 1	k: 160000	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
TNFRSF10C   160000 perm   39 sec   (4105 perm/sec)   p_kst 6.250000e-06   p_cons 1   p_joint 3.875000e-04

Joint ci ratio: 5.059790e-01	ci left: 2.642074e-04	ci right 4.476581e-04	k: 59	n:170000
Cons ci ratio: 2.305855e-05	ci left: 9.999783e-01	ci right 1	k: 170000	n:170000
KS ci ratio: 2.263186e+00	ci left: 1.424764e-06	ci right 4.249751e-05	k: 2	n:170000
TNFRSF10C   170000 perm   42 sec   (4042 perm/sec)   p_kst 1.176471e-05   p_cons 1   p_joint 3.470588e-04

Joint ci ratio: 5.018181e-01	ci left: 2.543778e-04	ci right 4.290455e-04	k: 60	n:180000
Cons ci ratio: 2.177754e-05	ci left: 9.999795e-01	ci right 1	k: 180000	n:180000
KS ci ratio: 2.263188e+00	ci left: 1.345610e-06	ci right 4.013657e-05	k: 2	n:180000
TNFRSF10C   180000 perm   45 sec   (3980 perm/sec)   p_kst 1.111111e-05   p_cons 1   p_joint 3.333333e-04

Joint ci ratio: 4.824336e-01	ci left: 2.640392e-04	ci right 4.360208e-04	k: 65	n:190000
Cons ci ratio: 2.063136e-05	ci left: 9.999806e-01	ci right 1	k: 190000	n:190000
KS ci ratio: 2.263189e+00	ci left: 1.274788e-06	ci right 3.802415e-05	k: 2	n:190000
TNFRSF10C   190000 perm   48 sec   (3920 perm/sec)   p_kst 1.052632e-05   p_cons 1   p_joint 3.421053e-04

Joint ci ratio: 4.752878e-01	ci left: 2.596295e-04	ci right 4.254189e-04	k: 67	n:200000
Cons ci ratio: 1.959980e-05	ci left: 9.999816e-01	ci right 1	k: 200000	n:200000
KS ci ratio: 1.959976e+00	ci left: 3.093371e-06	ci right 4.383573e-05	k: 3	n:200000
TNFRSF10C   200000 perm   52 sec   (3862 perm/sec)   p_kst 1.500000e-05   p_cons 1   p_joint 3.350000e-04

Joint ci ratio: 5.018305e-01	ci left: 2.180370e-04	ci right 3.677558e-04	k: 60	n:210000
Cons ci ratio: 1.866649e-05	ci left: 9.999824e-01	ci right 1	k: 210000	n:210000
KS ci ratio: 1.959977e+00	ci left: 2.946067e-06	ci right 4.174835e-05	k: 3	n:210000
TNFRSF10C   210000 perm   55 sec   (3802 perm/sec)   p_kst 1.428571e-05   p_cons 1   p_joint 2.857143e-04

Joint ci ratio: 5.191482e-01	ci left: 1.922865e-04	ci right 3.305359e-04	k: 56	n:220000
Cons ci ratio: 1.781802e-05	ci left: 9.999832e-01	ci right 1	k: 220000	n:220000
KS ci ratio: 1.959978e+00	ci left: 2.812155e-06	ci right 3.985072e-05	k: 3	n:220000
TNFRSF10C   220000 perm   59 sec   (3746 perm/sec)   p_kst 1.363636e-05   p_cons 1   p_joint 2.545455e-04

Joint ci ratio: 5.146552e-01	ci left: 1.877063e-04	ci right 3.210757e-04	k: 57	n:230000
Cons ci ratio: 1.704333e-05	ci left: 9.999840e-01	ci right 1	k: 230000	n:230000
KS ci ratio: 1.959979e+00	ci left: 2.689887e-06	ci right 3.811810e-05	k: 3	n:230000
TNFRSF10C   230000 perm   62 sec   (3690 perm/sec)   p_kst 1.304348e-05   p_cons 1   p_joint 2.478261e-04

Joint ci ratio: 5.102767e-01	ci left: 1.835126e-04	ci right 3.123992e-04	k: 58	n:240000
Cons ci ratio: 1.633320e-05	ci left: 9.999846e-01	ci right 1	k: 240000	n:240000
KS ci ratio: 1.959980e+00	ci left: 2.577808e-06	ci right 3.652987e-05	k: 3	n:240000
TNFRSF10C   240000 perm   66 sec   (3636 perm/sec)   p_kst 1.250000e-05   p_cons 1   p_joint 2.416667e-04

Joint ci ratio: 5.102793e-01	ci left: 1.761719e-04	ci right 2.999036e-04	k: 58	n:250000
Cons ci ratio: 1.567987e-05	ci left: 9.999852e-01	ci right 1	k: 250000	n:250000
KS ci ratio: 1.959980e+00	ci left: 2.474695e-06	ci right 3.506869e-05	k: 3	n:250000
TNFRSF10C   250000 perm   70 sec   (3584 perm/sec)   p_kst 1.200000e-05   p_cons 1   p_joint 2.320000e-04

Joint ci ratio: 4.977802e-01	ci left: 1.794668e-04	ci right 3.013632e-04	k: 61	n:260000
Cons ci ratio: 1.507681e-05	ci left: 9.999858e-01	ci right 1	k: 260000	n:260000
KS ci ratio: 1.959981e+00	ci left: 2.379514e-06	ci right 3.371991e-05	k: 3	n:260000
TNFRSF10C   260000 perm   74 sec   (3533 perm/sec)   p_kst 1.153846e-05   p_cons 1   p_joint 2.346154e-04

Joint ci ratio: 5.543194e-01	ci left: 1.342639e-04	ci right 2.399211e-04	k: 49	n:270000
Cons ci ratio: 1.451841e-05	ci left: 9.999863e-01	ci right 1	k: 270000	n:270000
KS ci ratio: 1.959982e+00	ci left: 2.291384e-06	ci right 3.247103e-05	k: 3	n:270000
TNFRSF10C   270000 perm   78 sec   (3483 perm/sec)   p_kst 1.111111e-05   p_cons 1   p_joint 1.814815e-04

Joint ci ratio: 5.435547e-01	ci left: 1.356202e-04	ci right 2.394774e-04	k: 51	n:280000
Cons ci ratio: 1.399990e-05	ci left: 9.999868e-01	ci right 1	k: 280000	n:280000
KS ci ratio: 1.753059e+00	ci left: 3.892390e-06	ci right 3.657669e-05	k: 4	n:280000
TNFRSF10C   280000 perm   82 sec   (3433 perm/sec)   p_kst 1.428571e-05   p_cons 1   p_joint 1.821429e-04

Joint ci ratio: 5.384033e-01	ci left: 1.339204e-04	ci right 2.351351e-04	k: 52	n:290000
Cons ci ratio: 1.351715e-05	ci left: 9.999873e-01	ci right 1	k: 290000	n:290000
KS ci ratio: 1.753059e+00	ci left: 3.758169e-06	ci right 3.531544e-05	k: 4	n:290000
TNFRSF10C   290000 perm   86 sec   (3386 perm/sec)   p_kst 1.379310e-05   p_cons 1   p_joint 1.793103e-04

Joint ci ratio: 5.285234e-01	ci left: 1.352243e-04	ci right 2.348545e-04	k: 54	n:300000
Cons ci ratio: 1.306658e-05	ci left: 9.999877e-01	ci right 1	k: 300000	n:300000
KS ci ratio: 1.753060e+00	ci left: 3.632896e-06	ci right 3.413827e-05	k: 4	n:300000
TNFRSF10C   300000 perm   90 sec   (3339 perm/sec)   p_kst 1.333333e-05   p_cons 1   p_joint 1.800000e-04

Joint ci ratio: 5.333971e-01	ci left: 1.280691e-04	ci right 2.236241e-04	k: 53	n:310000
Cons ci ratio: 1.264508e-05	ci left: 9.999881e-01	ci right 1	k: 310000	n:310000
KS ci ratio: 1.753060e+00	ci left: 3.515706e-06	ci right 3.303705e-05	k: 4	n:310000
TNFRSF10C   310000 perm   94 sec   (3294 perm/sec)   p_kst 1.290323e-05   p_cons 1   p_joint 1.709677e-04

Joint ci ratio: 5.333986e-01	ci left: 1.240669e-04	ci right 2.166361e-04	k: 53	n:320000
Cons ci ratio: 1.224992e-05	ci left: 9.999885e-01	ci right 1	k: 320000	n:320000
KS ci ratio: 1.753061e+00	ci left: 3.405839e-06	ci right 3.200465e-05	k: 4	n:320000
TNFRSF10C   320000 perm   98 sec   (3249 perm/sec)   p_kst 1.250000e-05   p_cons 1   p_joint 1.656250e-04

Joint ci ratio: 5.285278e-01	ci left: 1.229310e-04	ci right 2.135046e-04	k: 54	n:330000
Cons ci ratio: 1.187872e-05	ci left: 9.999888e-01	ci right 1	k: 330000	n:330000
KS ci ratio: 1.753061e+00	ci left: 3.302632e-06	ci right 3.103482e-05	k: 4	n:330000
TNFRSF10C   330000 perm   103 sec   (3204 perm/sec)   p_kst 1.212121e-05   p_cons 1   p_joint 1.636364e-04

Joint ci ratio: 5.146766e-01	ci left: 1.269766e-04	ci right 2.172008e-04	k: 57	n:340000
Cons ci ratio: 1.152934e-05	ci left: 9.999892e-01	ci right 1	k: 340000	n:340000
KS ci ratio: 1.753062e+00	ci left: 3.205495e-06	ci right 3.012204e-05	k: 4	n:340000
TNFRSF10C   340000 perm   108 sec   (3161 perm/sec)   p_kst 1.176471e-05   p_cons 1   p_joint 1.676471e-04

Joint ci ratio: 5.060257e-01	ci left: 1.283268e-04	ci right 2.174395e-04	k: 59	n:350000
Cons ci ratio: 1.119994e-05	ci left: 9.999895e-01	ci right 1	k: 350000	n:350000
KS ci ratio: 1.753062e+00	ci left: 3.113910e-06	ci right 2.926142e-05	k: 4	n:350000
TNFRSF10C   350000 perm   112 sec   (3120 perm/sec)   p_kst 1.142857e-05   p_cons 1   p_joint 1.685714e-04

Joint ci ratio: 5.018613e-01	ci left: 1.271866e-04	ci right 2.145279e-04	k: 60	n:360000
Cons ci ratio: 1.088883e-05	ci left: 9.999898e-01	ci right 1	k: 360000	n:360000
KS ci ratio: 1.753063e+00	ci left: 3.027412e-06	ci right 2.844861e-05	k: 4	n:360000
TNFRSF10C   360000 perm   117 sec   (3081 perm/sec)   p_kst 1.111111e-05   p_cons 1   p_joint 1.666667e-04

Joint ci ratio: 4.938309e-01	ci left: 1.284754e-04	ci right 2.148090e-04	k: 62	n:370000
Cons ci ratio: 1.059454e-05	ci left: 9.999900e-01	ci right 1	k: 370000	n:370000
KS ci ratio: 1.753063e+00	ci left: 2.945590e-06	ci right 2.767974e-05	k: 4	n:370000
TNFRSF10C   370000 perm   122 sec   (3042 perm/sec)   p_kst 1.081081e-05   p_cons 1   p_joint 1.675676e-04

Joint ci ratio: 4.788614e-01	ci left: 1.343298e-04	ci right 2.209637e-04	k: 66	n:380000
Cons ci ratio: 1.031574e-05	ci left: 9.999903e-01	ci right 1	k: 380000	n:380000
KS ci ratio: 1.753063e+00	ci left: 2.868074e-06	ci right 2.695133e-05	k: 4	n:380000
TNFRSF10C   380000 perm   126 sec   (3006 perm/sec)   p_kst 1.052632e-05   p_cons 1   p_joint 1.736842e-04

Joint ci ratio: 4.718702e-01	ci left: 1.353990e-04	ci right 2.210364e-04	k: 68	n:390000
Cons ci ratio: 1.005123e-05	ci left: 9.999905e-01	ci right 1	k: 390000	n:390000
KS ci ratio: 1.600319e+00	ci left: 4.162798e-06	ci right 2.991854e-05	k: 5	n:390000
TNFRSF10C   390000 perm   131 sec   (2971 perm/sec)   p_kst 1.282051e-05   p_cons 1   p_joint 1.743590e-04

Joint ci ratio: 4.718713e-01	ci left: 1.320140e-04	ci right 2.155106e-04	k: 68	n:400000
Cons ci ratio: 9.799951e-06	ci left: 9.999908e-01	ci right 1	k: 400000	n:400000
KS ci ratio: 1.600319e+00	ci left: 4.058728e-06	ci right 2.917059e-05	k: 5	n:400000
TNFRSF10C   400000 perm   136 sec   (2936 perm/sec)   p_kst 1.250000e-05   p_cons 1   p_joint 1.700000e-04

Joint ci ratio: 4.651776e-01	ci left: 1.330961e-04	ci right 2.157044e-04	k: 70	n:410000
Cons ci ratio: 9.560929e-06	ci left: 9.999910e-01	ci right 1	k: 410000	n:410000
KS ci ratio: 1.600320e+00	ci left: 3.959734e-06	ci right 2.845912e-05	k: 5	n:410000
TNFRSF10C   410000 perm   141 sec   (2899 perm/sec)   p_kst 1.219512e-05   p_cons 1   p_joint 1.707317e-04

Joint ci ratio: 4.556501e-01	ci left: 1.362413e-04	ci right 2.185345e-04	k: 73	n:420000
Cons ci ratio: 9.333289e-06	ci left: 9.999912e-01	ci right 1	k: 420000	n:420000
KS ci ratio: 1.600320e+00	ci left: 3.865455e-06	ci right 2.778152e-05	k: 5	n:420000
TNFRSF10C   420000 perm   147 sec   (2862 perm/sec)   p_kst 1.190476e-05   p_cons 1   p_joint 1.738095e-04

Joint ci ratio: 4.718741e-01	ci left: 1.228036e-04	ci right 2.004753e-04	k: 68	n:430000
Cons ci ratio: 9.116237e-06	ci left: 9.999914e-01	ci right 1	k: 430000	n:430000
KS ci ratio: 1.600320e+00	ci left: 3.775560e-06	ci right 2.713545e-05	k: 5	n:430000
TNFRSF10C   430000 perm   152 sec   (2829 perm/sec)   p_kst 1.162791e-05   p_cons 1   p_joint 1.581395e-04

Joint ci ratio: 4.651803e-01	ci left: 1.240212e-04	ci right 2.009976e-04	k: 70	n:440000
Cons ci ratio: 8.909050e-06	ci left: 9.999916e-01	ci right 1	k: 440000	n:440000
KS ci ratio: 1.600321e+00	ci left: 3.689752e-06	ci right 2.651874e-05	k: 5	n:440000
TNFRSF10C   440000 perm   157 sec   (2797 perm/sec)   p_kst 1.136364e-05   p_cons 1   p_joint 1.590909e-04

Joint ci ratio: 4.651812e-01	ci left: 1.212651e-04	ci right 1.965311e-04	k: 70	n:450000
Cons ci ratio: 8.711072e-06	ci left: 9.999918e-01	ci right 1	k: 450000	n:450000
KS ci ratio: 1.600321e+00	ci left: 3.607757e-06	ci right 2.592943e-05	k: 5	n:450000
TNFRSF10C   450000 perm   163 sec   (2765 perm/sec)   p_kst 1.111111e-05   p_cons 1   p_joint 1.555556e-04

Joint ci ratio: 4.526052e-01	ci left: 1.263193e-04	ci right 2.019529e-04	k: 74	n:460000
Cons ci ratio: 8.521702e-06	ci left: 9.999920e-01	ci right 1	k: 460000	n:460000
KS ci ratio: 1.481608e+00	ci left: 4.786741e-06	ci right 2.838994e-05	k: 6	n:460000
TNFRSF10C   460000 perm   168 sec   (2733 perm/sec)   p_kst 1.304348e-05   p_cons 1   p_joint 1.608696e-04

Joint ci ratio: 4.496180e-01	ci left: 1.255174e-04	ci right 2.000239e-04	k: 75	n:470000
Cons ci ratio: 8.340390e-06	ci left: 9.999922e-01	ci right 1	k: 470000	n:470000
KS ci ratio: 1.481608e+00	ci left: 4.684895e-06	ci right 2.778591e-05	k: 6	n:470000
TNFRSF10C   470000 perm   174 sec   (2702 perm/sec)   p_kst 1.276596e-05   p_cons 1   p_joint 1.595745e-04

Joint ci ratio: 4.466892e-01	ci left: 1.247506e-04	ci right 1.981738e-04	k: 76	n:480000
Cons ci ratio: 8.166633e-06	ci left: 9.999923e-01	ci right 1	k: 480000	n:480000
KS ci ratio: 1.385916e+00	ci left: 5.863276e-06	ci right 3.004701e-05	k: 7	n:480000
TNFRSF10C   480000 perm   180 sec   (2672 perm/sec)   p_kst 1.458333e-05   p_cons 1   p_joint 1.583333e-04

Joint ci ratio: 4.466899e-01	ci left: 1.222047e-04	ci right 1.941295e-04	k: 76	n:490000
Cons ci ratio: 7.999967e-06	ci left: 9.999925e-01	ci right 1	k: 490000	n:490000
KS ci ratio: 1.385917e+00	ci left: 5.743617e-06	ci right 2.943381e-05	k: 7	n:490000
TNFRSF10C   490000 perm   185 sec   (2643 perm/sec)   p_kst 1.428571e-05   p_cons 1   p_joint 1.551020e-04

Joint ci ratio: 4.382338e-01	ci left: 1.250920e-04	ci right 1.969113e-04	k: 79	n:500000
Cons ci ratio: 7.839969e-06	ci left: 9.999926e-01	ci right 1	k: 500000	n:500000
KS ci ratio: 1.385917e+00	ci left: 5.628744e-06	ci right 2.884514e-05	k: 7	n:500000
TNFRSF10C   500000 perm   191 sec   (2614 perm/sec)   p_kst 1.400000e-05   p_cons 1   p_joint 1.580000e-04

Joint ci ratio: 4.276714e-01	ci left: 1.296276e-04	ci right 2.017431e-04	k: 83	n:510000
Cons ci ratio: 7.686244e-06	ci left: 9.999928e-01	ci right 1	k: 510000	n:510000
KS ci ratio: 1.385917e+00	ci left: 5.518376e-06	ci right 2.827955e-05	k: 7	n:510000
TNFRSF10C   510000 perm   197 sec   (2586 perm/sec)   p_kst 1.372549e-05   p_cons 1   p_joint 1.627451e-04

Joint ci ratio: 3.843488e-01	ci left: 1.616796e-04	ci right 2.402208e-04	k: 103	n:520000
Cons ci ratio: 7.538433e-06	ci left: 9.999929e-01	ci right 1	k: 520000	n:520000
KS ci ratio: 1.385917e+00	ci left: 5.412253e-06	ci right 2.773572e-05	k: 7	n:520000
TNFRSF10C   520000 perm   203 sec   (2559 perm/sec)   p_kst 1.346154e-05   p_cons 1   p_joint 1.980769e-04

Joint ci ratio: 3.862112e-01	ci left: 1.569249e-04	ci right 2.336198e-04	k: 102	n:530000
Cons ci ratio: 7.396199e-06	ci left: 9.999930e-01	ci right 1	k: 530000	n:530000
KS ci ratio: 1.385918e+00	ci left: 5.310135e-06	ci right 2.721240e-05	k: 7	n:530000
TNFRSF10C   530000 perm   209 sec   (2533 perm/sec)   p_kst 1.320755e-05   p_cons 1   p_joint 1.924528e-04

Joint ci ratio: 3.939383e-01	ci left: 1.473378e-04	ci right 2.211634e-04	k: 98	n:540000
Cons ci ratio: 7.259232e-06	ci left: 9.999932e-01	ci right 1	k: 540000	n:540000
KS ci ratio: 1.385918e+00	ci left: 5.211799e-06	ci right 2.670847e-05	k: 7	n:540000
TNFRSF10C   540000 perm   215 sec   (2507 perm/sec)   p_kst 1.296296e-05   p_cons 1   p_joint 1.814815e-04

Joint ci ratio: 3.900184e-01	ci left: 1.479369e-04	ci right 2.211353e-04	k: 100	n:550000
Cons ci ratio: 7.127247e-06	ci left: 9.999933e-01	ci right 1	k: 550000	n:550000
KS ci ratio: 1.385918e+00	ci left: 5.117039e-06	ci right 2.622287e-05	k: 7	n:550000
TNFRSF10C   550000 perm   222 sec   (2482 perm/sec)   p_kst 1.272727e-05   p_cons 1   p_joint 1.818182e-04

Joint ci ratio: 3.843516e-01	ci left: 1.501309e-04	ci right 2.230625e-04	k: 103	n:560000
Cons ci ratio: 6.999975e-06	ci left: 9.999934e-01	ci right 1	k: 560000	n:560000
KS ci ratio: 1.385918e+00	ci left: 5.025663e-06	ci right 2.575461e-05	k: 7	n:560000
TNFRSF10C   560000 perm   228 sec   (2457 perm/sec)   p_kst 1.250000e-05   p_cons 1   p_joint 1.839286e-04

Joint ci ratio: 3.807083e-01	ci left: 1.506684e-04	ci right 2.229937e-04	k: 105	n:570000
Cons ci ratio: 6.877169e-06	ci left: 9.999935e-01	ci right 1	k: 570000	n:570000
KS ci ratio: 1.385918e+00	ci left: 4.937493e-06	ci right 2.530277e-05	k: 7	n:570000
TNFRSF10C   570000 perm   234 sec   (2432 perm/sec)   p_kst 1.228070e-05   p_cons 1   p_joint 1.842105e-04

Joint ci ratio: 4.154869e-01	ci left: 1.216889e-04	ci right 1.869251e-04	k: 88	n:580000
Cons ci ratio: 6.758597e-06	ci left: 9.999936e-01	ci right 1	k: 580000	n:580000
KS ci ratio: 1.385919e+00	ci left: 4.852363e-06	ci right 2.486652e-05	k: 7	n:580000
TNFRSF10C   580000 perm   241 sec   (2407 perm/sec)   p_kst 1.206897e-05   p_cons 1   p_joint 1.517241e-04

Joint ci ratio: 4.154875e-01	ci left: 1.196264e-04	ci right 1.837569e-04	k: 88	n:590000
Cons ci ratio: 6.644045e-06	ci left: 9.999937e-01	ci right 1	k: 590000	n:590000
KS ci ratio: 1.385919e+00	ci left: 4.770120e-06	ci right 2.444506e-05	k: 7	n:590000
TNFRSF10C   590000 perm   248 sec   (2383 perm/sec)   p_kst 1.186441e-05   p_cons 1   p_joint 1.491525e-04

Joint ci ratio: 4.086566e-01	ci left: 1.221142e-04	ci right 1.862098e-04	k: 91	n:600000
Cons ci ratio: 6.533312e-06	ci left: 9.999939e-01	ci right 1	k: 600000	n:600000
KS ci ratio: 1.385919e+00	ci left: 4.690618e-06	ci right 2.403764e-05	k: 7	n:600000
TNFRSF10C   600000 perm   254 sec   (2359 perm/sec)   p_kst 1.166667e-05   p_cons 1   p_joint 1.516667e-04

Joint ci ratio: 4.226743e-01	ci left: 1.113047e-04	ci right 1.722985e-04	k: 85	n:610000
Cons ci ratio: 6.426208e-06	ci left: 9.999940e-01	ci right 1	k: 610000	n:610000
KS ci ratio: 1.385919e+00	ci left: 4.613722e-06	ci right 2.364359e-05	k: 7	n:610000
TNFRSF10C   610000 perm   261 sec   (2336 perm/sec)   p_kst 1.147541e-05   p_cons 1   p_joint 1.393443e-04

Joint ci ratio: 4.178434e-01	ci left: 1.123941e-04	ci right 1.730845e-04	k: 87	n:620000
Cons ci ratio: 6.322560e-06	ci left: 9.999941e-01	ci right 1	k: 620000	n:620000
KS ci ratio: 1.385919e+00	ci left: 4.539307e-06	ci right 2.326224e-05	k: 7	n:620000
TNFRSF10C   620000 perm   268 sec   (2313 perm/sec)   p_kst 1.129032e-05   p_cons 1   p_joint 1.403226e-04

Joint ci ratio: 4.154895e-01	ci left: 1.120309e-04	ci right 1.720900e-04	k: 88	n:630000
Cons ci ratio: 6.222202e-06	ci left: 9.999941e-01	ci right 1	k: 630000	n:630000
KS ci ratio: 1.385919e+00	ci left: 4.467254e-06	ci right 2.289300e-05	k: 7	n:630000
TNFRSF10C   630000 perm   275 sec   (2289 perm/sec)   p_kst 1.111111e-05   p_cons 1   p_joint 1.396825e-04

Joint ci ratio: 4.154900e-01	ci left: 1.102804e-04	ci right 1.694011e-04	k: 88	n:640000
Cons ci ratio: 6.124981e-06	ci left: 9.999942e-01	ci right 1	k: 640000	n:640000
KS ci ratio: 1.385920e+00	ci left: 4.397453e-06	ci right 2.253530e-05	k: 7	n:640000
TNFRSF10C   640000 perm   282 sec   (2267 perm/sec)   p_kst 1.093750e-05   p_cons 1   p_joint 1.375000e-04

Joint ci ratio: 4.226762e-01	ci left: 1.044551e-04	ci right 1.616957e-04	k: 85	n:650000
Cons ci ratio: 6.030751e-06	ci left: 9.999943e-01	ci right 1	k: 650000	n:650000
KS ci ratio: 1.385920e+00	ci left: 4.329800e-06	ci right 2.218860e-05	k: 7	n:650000
TNFRSF10C   650000 perm   289 sec   (2247 perm/sec)   p_kst 1.076923e-05   p_cons 1   p_joint 1.307692e-04

Joint ci ratio: 4.202401e-01	ci left: 1.042269e-04	ci right 1.609207e-04	k: 86	n:660000
Cons ci ratio: 5.939376e-06	ci left: 9.999944e-01	ci right 1	k: 660000	n:660000
KS ci ratio: 1.385920e+00	ci left: 4.264197e-06	ci right 2.185242e-05	k: 7	n:660000
TNFRSF10C   660000 perm   297 sec   (2224 perm/sec)   p_kst 1.060606e-05   p_cons 1   p_joint 1.303030e-04

Joint ci ratio: 4.131762e-01	ci left: 1.066794e-04	ci right 1.634634e-04	k: 89	n:670000
Cons ci ratio: 5.850729e-06	ci left: 9.999945e-01	ci right 1	k: 670000	n:670000
KS ci ratio: 1.306657e+00	ci left: 5.154987e-06	ci right 2.352701e-05	k: 8	n:670000
TNFRSF10C   670000 perm   304 sec   (2203 perm/sec)   p_kst 1.194030e-05   p_cons 1   p_joint 1.328358e-04

Joint ci ratio: 4.086603e-01	ci left: 1.077477e-04	ci right 1.643031e-04	k: 91	n:680000
Cons ci ratio: 5.764689e-06	ci left: 9.999946e-01	ci right 1	k: 680000	n:680000
KS ci ratio: 1.306657e+00	ci left: 5.079178e-06	ci right 2.318103e-05	k: 8	n:680000
TNFRSF10C   680000 perm   311 sec   (2184 perm/sec)   p_kst 1.176471e-05   p_cons 1   p_joint 1.338235e-04

Joint ci ratio: 4.064574e-01	ci left: 1.074868e-04	ci right 1.635190e-04	k: 92	n:690000
Cons ci ratio: 5.681143e-06	ci left: 9.999947e-01	ci right 1	k: 690000	n:690000
KS ci ratio: 1.306657e+00	ci left: 5.005567e-06	ci right 2.284507e-05	k: 8	n:690000
TNFRSF10C   690000 perm   319 sec   (2165 perm/sec)   p_kst 1.159420e-05   p_cons 1   p_joint 1.333333e-04

Joint ci ratio: 4.042897e-01	ci left: 1.072342e-04	ci right 1.627565e-04	k: 93	n:700000
Cons ci ratio: 5.599984e-06	ci left: 9.999947e-01	ci right 1	k: 700000	n:700000
KS ci ratio: 1.306657e+00	ci left: 4.934058e-06	ci right 2.251872e-05	k: 8	n:700000
TNFRSF10C   700000 perm   326 sec   (2145 perm/sec)   p_kst 1.142857e-05   p_cons 1   p_joint 1.328571e-04

Joint ci ratio: 4.021563e-01	ci left: 1.069894e-04	ci right 1.620148e-04	k: 94	n:710000
Cons ci ratio: 5.521111e-06	ci left: 9.999948e-01	ci right 1	k: 710000	n:710000
KS ci ratio: 1.306657e+00	ci left: 4.864565e-06	ci right 2.220155e-05	k: 8	n:710000
TNFRSF10C   710000 perm   334 sec   (2126 perm/sec)   p_kst 1.126761e-05   p_cons 1   p_joint 1.323944e-04

Joint ci ratio: 3.959526e-01	ci left: 1.092520e-04	ci right 1.643473e-04	k: 97	n:720000
Cons ci ratio: 5.444429e-06	ci left: 9.999949e-01	ci right 1	k: 720000	n:720000
KS ci ratio: 1.306658e+00	ci left: 4.797001e-06	ci right 2.189320e-05	k: 8	n:720000
TNFRSF10C   720000 perm   342 sec   (2108 perm/sec)   p_kst 1.111111e-05   p_cons 1   p_joint 1.347222e-04

Joint ci ratio: 3.959529e-01	ci left: 1.077553e-04	ci right 1.620960e-04	k: 97	n:730000
Cons ci ratio: 5.369848e-06	ci left: 9.999949e-01	ci right 1	k: 730000	n:730000
KS ci ratio: 1.306658e+00	ci left: 4.731288e-06	ci right 2.159330e-05	k: 8	n:730000
TNFRSF10C   730000 perm   349 sec   (2090 perm/sec)   p_kst 1.095890e-05   p_cons 1   p_joint 1.328767e-04

Joint ci ratio: 3.939482e-01	ci left: 1.075163e-04	ci right 1.613904e-04	k: 98	n:740000
Cons ci ratio: 5.297283e-06	ci left: 9.999950e-01	ci right 1	k: 740000	n:740000
KS ci ratio: 1.306658e+00	ci left: 4.667352e-06	ci right 2.130150e-05	k: 8	n:740000
TNFRSF10C   740000 perm   357 sec   (2072 perm/sec)   p_kst 1.081081e-05   p_cons 1   p_joint 1.324324e-04

Joint ci ratio: 3.919736e-01	ci left: 1.072843e-04	ci right 1.607030e-04	k: 99	n:750000
Cons ci ratio: 5.226653e-06	ci left: 9.999951e-01	ci right 1	k: 750000	n:750000
KS ci ratio: 1.306658e+00	ci left: 4.605120e-06	ci right 2.101748e-05	k: 8	n:750000
TNFRSF10C   750000 perm   365 sec   (2055 perm/sec)   p_kst 1.066667e-05   p_cons 1   p_joint 1.320000e-04

Joint ci ratio: 3.900284e-01	ci left: 1.070591e-04	ci right 1.600330e-04	k: 100	n:760000
Cons ci ratio: 5.157881e-06	ci left: 9.999951e-01	ci right 1	k: 760000	n:760000
KS ci ratio: 1.306658e+00	ci left: 4.544527e-06	ci right 2.074093e-05	k: 8	n:760000
TNFRSF10C   760000 perm   373 sec   (2038 perm/sec)   p_kst 1.052632e-05   p_cons 1   p_joint 1.315789e-04

Joint ci ratio: 3.825265e-01	ci left: 1.103591e-04	ci right 1.636514e-04	k: 104	n:770000
Cons ci ratio: 5.090896e-06	ci left: 9.999952e-01	ci right 1	k: 770000	n:770000
KS ci ratio: 1.306658e+00	ci left: 4.485507e-06	ci right 2.047157e-05	k: 8	n:770000
TNFRSF10C   770000 perm   381 sec   (2021 perm/sec)   p_kst 1.038961e-05   p_cons 1   p_joint 1.350649e-04

Joint ci ratio: 3.789345e-01	ci left: 1.112630e-04	ci right 1.643617e-04	k: 106	n:780000
Cons ci ratio: 5.025628e-06	ci left: 9.999953e-01	ci right 1	k: 780000	n:780000
KS ci ratio: 1.306658e+00	ci left: 4.428000e-06	ci right 2.020912e-05	k: 8	n:780000
TNFRSF10C   780000 perm   389 sec   (2003 perm/sec)   p_kst 1.025641e-05   p_cons 1   p_joint 1.358974e-04

Joint ci ratio: 3.771762e-01	ci left: 1.110001e-04	ci right 1.636667e-04	k: 107	n:790000
Cons ci ratio: 4.962013e-06	ci left: 9.999953e-01	ci right 1	k: 790000	n:790000
KS ci ratio: 1.306658e+00	ci left: 4.371949e-06	ci right 1.995331e-05	k: 8	n:790000
TNFRSF10C   790000 perm   398 sec   (1987 perm/sec)   p_kst 1.012658e-05   p_cons 1   p_joint 1.354430e-04

Joint ci ratio: 3.771765e-01	ci left: 1.096126e-04	ci right 1.616209e-04	k: 107	n:800000
Cons ci ratio: 4.899988e-06	ci left: 9.999954e-01	ci right 1	k: 800000	n:800000
KS ci ratio: 1.306659e+00	ci left: 4.317300e-06	ci right 1.970389e-05	k: 8	n:800000
TNFRSF10C   800000 perm   406 sec   (1970 perm/sec)   p_kst 1.000000e-05   p_cons 1   p_joint 1.337500e-04

Joint ci ratio: 3.754424e-01	ci left: 1.093772e-04	ci right 1.609764e-04	k: 108	n:810000
Cons ci ratio: 4.839494e-06	ci left: 9.999954e-01	ci right 1	k: 810000	n:810000
KS ci ratio: 1.306659e+00	ci left: 4.264000e-06	ci right 1.946063e-05	k: 8	n:810000
TNFRSF10C   810000 perm   415 sec   (1954 perm/sec)   p_kst 9.876543e-06   p_cons 1   p_joint 1.333333e-04

Joint ci ratio: 3.754427e-01	ci left: 1.080433e-04	ci right 1.590133e-04	k: 108	n:820000
Cons ci ratio: 4.780476e-06	ci left: 9.999955e-01	ci right 1	k: 820000	n:820000
KS ci ratio: 1.306659e+00	ci left: 4.212000e-06	ci right 1.922331e-05	k: 8	n:820000
TNFRSF10C   820000 perm   423 sec   (1937 perm/sec)   p_kst 9.756098e-06   p_cons 1   p_joint 1.317073e-04

Joint ci ratio: 3.825284e-01	ci left: 1.023813e-04	ci right 1.518214e-04	k: 104	n:830000
Cons ci ratio: 4.722880e-06	ci left: 9.999956e-01	ci right 1	k: 830000	n:830000
KS ci ratio: 1.306659e+00	ci left: 4.161252e-06	ci right 1.899171e-05	k: 8	n:830000
TNFRSF10C   830000 perm   432 sec   (1921 perm/sec)   p_kst 9.638554e-06   p_cons 1   p_joint 1.253012e-04

Joint ci ratio: 3.862252e-01	ci left: 9.901154e-05	ci right 1.474041e-04	k: 102	n:840000
Cons ci ratio: 4.666656e-06	ci left: 9.999956e-01	ci right 1	k: 840000	n:840000
KS ci ratio: 1.306659e+00	ci left: 4.111714e-06	ci right 1.876561e-05	k: 8	n:840000
TNFRSF10C   840000 perm   441 sec   (1906 perm/sec)   p_kst 9.523810e-06   p_cons 1   p_joint 1.214286e-04

Joint ci ratio: 4.685100e-01	ci left: 6.316067e-05	ci right 1.027329e-04	k: 69	n:850000
Cons ci ratio: 4.611754e-06	ci left: 9.999957e-01	ci right 1	k: 850000	n:850000
KS ci ratio: 1.306659e+00	ci left: 4.063340e-06	ci right 1.854484e-05	k: 8	n:850000
TNFRSF10C   850000 perm   450 sec   (1890 perm/sec)   p_kst 9.411765e-06   p_cons 1   p_joint 8.117647e-05

Joint ci ratio: 4.753508e-01	ci left: 6.037733e-05	ci right 9.893807e-05	k: 67	n:860000
Cons ci ratio: 4.558129e-06	ci left: 9.999957e-01	ci right 1	k: 860000	n:860000
KS ci ratio: 1.306659e+00	ci left: 4.016092e-06	ci right 1.832921e-05	k: 8	n:860000
TNFRSF10C   860000 perm   459 sec   (1875 perm/sec)   p_kst 9.302326e-06   p_cons 1   p_joint 7.790698e-05

Joint ci ratio: 4.685105e-01	ci left: 6.170869e-05	ci right 1.003713e-04	k: 69	n:870000
Cons ci ratio: 4.505737e-06	ci left: 9.999958e-01	ci right 1	k: 870000	n:870000
KS ci ratio: 1.306659e+00	ci left: 3.969930e-06	ci right 1.811853e-05	k: 8	n:870000
TNFRSF10C   870000 perm   468 sec   (1861 perm/sec)   p_kst 9.195402e-06   p_cons 1   p_joint 7.931034e-05

Joint ci ratio: 4.685107e-01	ci left: 6.100745e-05	ci right 9.923069e-05	k: 69	n:880000
Cons ci ratio: 4.454535e-06	ci left: 9.999958e-01	ci right 1	k: 880000	n:880000
KS ci ratio: 1.306659e+00	ci left: 3.924817e-06	ci right 1.791264e-05	k: 8	n:880000
TNFRSF10C   880000 perm   477 sec   (1846 perm/sec)   p_kst 9.090909e-06   p_cons 1   p_joint 7.840909e-05

Joint ci ratio: 4.753514e-01	ci left: 5.834212e-05	ci right 9.560311e-05	k: 67	n:890000
Cons ci ratio: 4.404484e-06	ci left: 9.999959e-01	ci right 1	k: 890000	n:890000
KS ci ratio: 1.306659e+00	ci left: 3.880718e-06	ci right 1.771137e-05	k: 8	n:890000
TNFRSF10C   890000 perm   486 sec   (1832 perm/sec)   p_kst 8.988764e-06   p_cons 1   p_joint 7.528090e-05

Joint ci ratio: 4.718942e-01	ci left: 5.867231e-05	ci right 9.578370e-05	k: 68	n:900000
Cons ci ratio: 4.355546e-06	ci left: 9.999959e-01	ci right 1	k: 900000	n:900000
KS ci ratio: 1.306659e+00	ci left: 3.837599e-06	ci right 1.751458e-05	k: 8	n:900000
TNFRSF10C   900000 perm   495 sec   (1818 perm/sec)   p_kst 8.888889e-06   p_cons 1   p_joint 7.555556e-05

Joint ci ratio: 4.718944e-01	ci left: 5.802755e-05	ci right 9.473114e-05	k: 68	n:910000
Cons ci ratio: 4.307683e-06	ci left: 9.999959e-01	ci right 1	k: 910000	n:910000
KS ci ratio: 1.306659e+00	ci left: 3.795427e-06	ci right 1.732211e-05	k: 8	n:910000
TNFRSF10C   910000 perm   505 sec   (1803 perm/sec)   p_kst 8.791209e-06   p_cons 1   p_joint 7.472527e-05

Joint ci ratio: 4.685115e-01	ci left: 5.835493e-05	ci right 9.491635e-05	k: 69	n:920000
Cons ci ratio: 4.260860e-06	ci left: 9.999960e-01	ci right 1	k: 920000	n:920000
KS ci ratio: 1.306660e+00	ci left: 3.754173e-06	ci right 1.713383e-05	k: 8	n:920000
TNFRSF10C   920000 perm   514 sec   (1790 perm/sec)   p_kst 8.695652e-06   p_cons 1   p_joint 7.500000e-05

Joint ci ratio: 4.685117e-01	ci left: 5.772745e-05	ci right 9.389576e-05	k: 69	n:930000
Cons ci ratio: 4.215045e-06	ci left: 9.999960e-01	ci right 1	k: 930000	n:930000
KS ci ratio: 1.306660e+00	ci left: 3.713805e-06	ci right 1.694960e-05	k: 8	n:930000
TNFRSF10C   930000 perm   523 sec   (1777 perm/sec)   p_kst 8.602151e-06   p_cons 1   p_joint 7.419355e-05

Joint ci ratio: 4.652006e-01	ci left: 5.805197e-05	ci right 9.408502e-05	k: 70	n:940000
Cons ci ratio: 4.170204e-06	ci left: 9.999961e-01	ci right 1	k: 940000	n:940000
KS ci ratio: 1.306660e+00	ci left: 3.674296e-06	ci right 1.676928e-05	k: 8	n:940000
TNFRSF10C   940000 perm   533 sec   (1764 perm/sec)   p_kst 8.510638e-06   p_cons 1   p_joint 7.446809e-05

Joint ci ratio: 4.652008e-01	ci left: 5.744089e-05	ci right 9.309466e-05	k: 70	n:950000
Cons ci ratio: 4.126307e-06	ci left: 9.999961e-01	ci right 1	k: 950000	n:950000
KS ci ratio: 1.306660e+00	ci left: 3.635620e-06	ci right 1.659276e-05	k: 8	n:950000
TNFRSF10C   950000 perm   542 sec   (1751 perm/sec)   p_kst 8.421053e-06   p_cons 1   p_joint 7.368421e-05

Joint ci ratio: 4.587836e-01	ci left: 5.868333e-05	ci right 9.444917e-05	k: 72	n:960000
Cons ci ratio: 4.083325e-06	ci left: 9.999962e-01	ci right 1	k: 960000	n:960000
KS ci ratio: 1.306660e+00	ci left: 3.597748e-06	ci right 1.641992e-05	k: 8	n:960000
TNFRSF10C   960000 perm   552 sec   (1739 perm/sec)   p_kst 8.333333e-06   p_cons 1   p_joint 7.500000e-05

Joint ci ratio: 4.556731e-01	ci left: 5.899050e-05	ci right 9.462438e-05	k: 73	n:970000
Cons ci ratio: 4.041229e-06	ci left: 9.999962e-01	ci right 1	k: 970000	n:970000
KS ci ratio: 1.239606e+00	ci left: 4.242661e-06	ci right 1.761313e-05	k: 9	n:970000
TNFRSF10C   970000 perm   562 sec   (1727 perm/sec)   p_kst 9.278351e-06   p_cons 1   p_joint 7.525773e-05

Joint ci ratio: 4.526251e-01	ci left: 5.929220e-05	ci right 9.479523e-05	k: 74	n:980000
Cons ci ratio: 3.999992e-06	ci left: 9.999962e-01	ci right 1	k: 980000	n:980000
KS ci ratio: 1.239606e+00	ci left: 4.199369e-06	ci right 1.743340e-05	k: 9	n:980000
TNFRSF10C   980000 perm   572 sec   (1715 perm/sec)   p_kst 9.183673e-06   p_cons 1   p_joint 7.551020e-05

Joint ci ratio: 4.526252e-01	ci left: 5.869329e-05	ci right 9.383771e-05	k: 74	n:990000
Cons ci ratio: 3.959588e-06	ci left: 9.999963e-01	ci right 1	k: 990000	n:990000
KS ci ratio: 1.239606e+00	ci left: 4.156951e-06	ci right 1.725731e-05	k: 9	n:990000
TNFRSF10C   990000 perm   581 sec   (1703 perm/sec)   p_kst 9.090909e-06   p_cons 1   p_joint 7.474747e-05

Joint ci ratio: 4.496375e-01	ci left: 5.899270e-05	ci right 9.401226e-05	k: 75	n:1000000
Cons ci ratio: 3.919992e-06	ci left: 9.999963e-01	ci right 1	k: 1000000	n:1000000
KS ci ratio: 1.239606e+00	ci left: 4.115381e-06	ci right 1.708473e-05	k: 9	n:1000000
TNFRSF10C   1000000 perm   591 sec   (1691 perm/sec)   p_kst 9.000000e-06   p_cons 1   p_joint 7.500000e-05

Joint ci ratio: 4.652018e-01	ci left: 5.402854e-05	ci right 8.756434e-05	k: 70	n:1010000
Cons ci ratio: 3.881180e-06	ci left: 9.999963e-01	ci right 1	k: 1010000	n:1010000
KS ci ratio: 1.181917e+00	ci left: 4.747919e-06	ci right 1.820820e-05	k: 10	n:1010000
TNFRSF10C   1010000 perm   601 sec   (1679 perm/sec)   p_kst 9.900990e-06   p_cons 1   p_joint 6.930693e-05

Joint ci ratio: 4.652020e-01	ci left: 5.349884e-05	ci right 8.670587e-05	k: 70	n:1020000
Cons ci ratio: 3.843130e-06	ci left: 9.999964e-01	ci right 1	k: 1020000	n:1020000
KS ci ratio: 1.181918e+00	ci left: 4.701371e-06	ci right 1.802969e-05	k: 10	n:1020000
TNFRSF10C   1020000 perm   612 sec   (1667 perm/sec)   p_kst 9.803922e-06   p_cons 1   p_joint 6.862745e-05

Joint ci ratio: 4.652021e-01	ci left: 5.297943e-05	ci right 8.586407e-05	k: 70	n:1030000
Cons ci ratio: 3.805818e-06	ci left: 9.999964e-01	ci right 1	k: 1030000	n:1030000
KS ci ratio: 1.181918e+00	ci left: 4.655727e-06	ci right 1.785464e-05	k: 10	n:1030000
TNFRSF10C   1030000 perm   622 sec   (1656 perm/sec)   p_kst 9.708738e-06   p_cons 1   p_joint 6.796117e-05

Joint ci ratio: 4.652023e-01	ci left: 5.247001e-05	ci right 8.503847e-05	k: 70	n:1040000
Cons ci ratio: 3.769224e-06	ci left: 9.999965e-01	ci right 1	k: 1040000	n:1040000
KS ci ratio: 1.181918e+00	ci left: 4.610960e-06	ci right 1.768296e-05	k: 10	n:1040000
TNFRSF10C   1040000 perm   632 sec   (1645 perm/sec)   p_kst 9.615385e-06   p_cons 1   p_joint 6.730769e-05

Joint ci ratio: 4.619604e-01	ci left: 5.281140e-05	ci right 8.529147e-05	k: 71	n:1050000
Cons ci ratio: 3.733326e-06	ci left: 9.999965e-01	ci right 1	k: 1050000	n:1050000
KS ci ratio: 1.181918e+00	ci left: 4.567046e-06	ci right 1.751455e-05	k: 10	n:1050000
TNFRSF10C   1050000 perm   643 sec   (1633 perm/sec)   p_kst 9.523810e-06   p_cons 1   p_joint 6.761905e-05

Joint ci ratio: 4.619605e-01	ci left: 5.231318e-05	ci right 8.448684e-05	k: 71	n:1060000
Cons ci ratio: 3.698106e-06	ci left: 9.999965e-01	ci right 1	k: 1060000	n:1060000
KS ci ratio: 1.181918e+00	ci left: 4.523961e-06	ci right 1.734932e-05	k: 10	n:1060000
TNFRSF10C   1060000 perm   653 sec   (1622 perm/sec)   p_kst 9.433962e-06   p_cons 1   p_joint 6.698113e-05

Joint ci ratio: 4.619607e-01	ci left: 5.182427e-05	ci right 8.369725e-05	k: 71	n:1070000
Cons ci ratio: 3.663545e-06	ci left: 9.999966e-01	ci right 1	k: 1070000	n:1070000
KS ci ratio: 1.181918e+00	ci left: 4.481680e-06	ci right 1.718718e-05	k: 10	n:1070000
TNFRSF10C   1070000 perm   664 sec   (1611 perm/sec)   p_kst 9.345794e-06   p_cons 1   p_joint 6.635514e-05

Joint ci ratio: 4.619608e-01	ci left: 5.134441e-05	ci right 8.292229e-05	k: 71	n:1080000
Cons ci ratio: 3.629623e-06	ci left: 9.999966e-01	ci right 1	k: 1080000	n:1080000
KS ci ratio: 1.181918e+00	ci left: 4.440183e-06	ci right 1.702804e-05	k: 10	n:1080000
TNFRSF10C   1080000 perm   675 sec   (1600 perm/sec)   p_kst 9.259259e-06   p_cons 1   p_joint 6.574074e-05

Joint ci ratio: 4.587857e-01	ci left: 5.168435e-05	ci right 8.318469e-05	k: 72	n:1090000
Cons ci ratio: 3.596324e-06	ci left: 9.999966e-01	ci right 1	k: 1090000	n:1090000
KS ci ratio: 1.181918e+00	ci left: 4.399448e-06	ci right 1.687182e-05	k: 10	n:1090000
TNFRSF10C   1090000 perm   686 sec   (1589 perm/sec)   p_kst 9.174312e-06   p_cons 1   p_joint 6.605505e-05

Joint ci ratio: 4.587859e-01	ci left: 5.121449e-05	ci right 8.242847e-05	k: 72	n:1100000
Cons ci ratio: 3.563630e-06	ci left: 9.999966e-01	ci right 1	k: 1100000	n:1100000
KS ci ratio: 1.181918e+00	ci left: 4.359453e-06	ci right 1.671844e-05	k: 10	n:1100000
TNFRSF10C   1100000 perm   697 sec   (1579 perm/sec)   p_kst 9.090909e-06   p_cons 1   p_joint 6.545455e-05

Joint ci ratio: 4.587860e-01	ci left: 5.075310e-05	ci right 8.168588e-05	k: 72	n:1110000
Cons ci ratio: 3.531525e-06	ci left: 9.999967e-01	ci right 1	k: 1110000	n:1110000
KS ci ratio: 1.181918e+00	ci left: 4.320178e-06	ci right 1.656783e-05	k: 10	n:1110000
TNFRSF10C   1110000 perm   708 sec   (1569 perm/sec)   p_kst 9.009009e-06   p_cons 1   p_joint 6.486486e-05

Joint ci ratio: 4.788897e-01	ci left: 4.557564e-05	ci right 7.497099e-05	k: 66	n:1120000
Cons ci ratio: 3.499994e-06	ci left: 9.999967e-01	ci right 1	k: 1120000	n:1120000
KS ci ratio: 1.181918e+00	ci left: 4.281605e-06	ci right 1.641990e-05	k: 10	n:1120000
TNFRSF10C   1120000 perm   719 sec   (1559 perm/sec)   p_kst 8.928571e-06   p_cons 1   p_joint 5.892857e-05

Joint ci ratio: 4.753553e-01	ci left: 4.595080e-05	ci right 7.529819e-05	k: 67	n:1130000
Cons ci ratio: 3.469020e-06	ci left: 9.999967e-01	ci right 1	k: 1130000	n:1130000
KS ci ratio: 1.181918e+00	ci left: 4.243715e-06	ci right 1.627459e-05	k: 10	n:1130000
TNFRSF10C   1130000 perm   730 sec   (1549 perm/sec)   p_kst 8.849558e-06   p_cons 1   p_joint 5.929204e-05

Joint ci ratio: 4.753554e-01	ci left: 4.554772e-05	ci right 7.463768e-05	k: 67	n:1140000
Cons ci ratio: 3.438590e-06	ci left: 9.999968e-01	ci right 1	k: 1140000	n:1140000
KS ci ratio: 1.181918e+00	ci left: 4.206489e-06	ci right 1.613183e-05	k: 10	n:1140000
TNFRSF10C   1140000 perm   741 sec   (1539 perm/sec)   p_kst 8.771930e-06   p_cons 1   p_joint 5.877193e-05

Joint ci ratio: 4.753556e-01	ci left: 4.515165e-05	ci right 7.398866e-05	k: 67	n:1150000
Cons ci ratio: 3.408690e-06	ci left: 9.999968e-01	ci right 1	k: 1150000	n:1150000
KS ci ratio: 1.181918e+00	ci left: 4.169911e-06	ci right 1.599156e-05	k: 10	n:1150000
TNFRSF10C   1150000 perm   752 sec   (1529 perm/sec)   p_kst 8.695652e-06   p_cons 1   p_joint 5.826087e-05

Joint ci ratio: 4.753557e-01	ci left: 4.476241e-05	ci right 7.335083e-05	k: 67	n:1160000
Cons ci ratio: 3.379305e-06	ci left: 9.999968e-01	ci right 1	k: 1160000	n:1160000
KS ci ratio: 1.181918e+00	ci left: 4.133963e-06	ci right 1.585370e-05	k: 10	n:1160000
TNFRSF10C   1160000 perm   763 sec   (1520 perm/sec)   p_kst 8.620690e-06   p_cons 1   p_joint 5.775862e-05

Joint ci ratio: 4.718984e-01	ci left: 4.513246e-05	ci right 7.367994e-05	k: 68	n:1170000
Cons ci ratio: 3.350422e-06	ci left: 9.999968e-01	ci right 1	k: 1170000	n:1170000
KS ci ratio: 1.181918e+00	ci left: 4.098630e-06	ci right 1.571820e-05	k: 10	n:1170000
TNFRSF10C   1170000 perm   775 sec   (1511 perm/sec)   p_kst 8.547009e-06   p_cons 1   p_joint 5.811966e-05

Joint ci ratio: 4.718985e-01	ci left: 4.474998e-05	ci right 7.305554e-05	k: 68	n:1180000
Cons ci ratio: 3.322028e-06	ci left: 9.999969e-01	ci right 1	k: 1180000	n:1180000
KS ci ratio: 1.181918e+00	ci left: 4.063896e-06	ci right 1.558499e-05	k: 10	n:1180000
TNFRSF10C   1180000 perm   786 sec   (1502 perm/sec)   p_kst 8.474576e-06   p_cons 1   p_joint 5.762712e-05

Joint ci ratio: 4.685156e-01	ci left: 4.511466e-05	ci right 7.338088e-05	k: 69	n:1190000
Cons ci ratio: 3.294112e-06	ci left: 9.999969e-01	ci right 1	k: 1190000	n:1190000
KS ci ratio: 1.181919e+00	ci left: 4.029746e-06	ci right 1.545403e-05	k: 10	n:1190000
TNFRSF10C   1190000 perm   797 sec   (1492 perm/sec)   p_kst 8.403361e-06   p_cons 1   p_joint 5.798319e-05

Joint ci ratio: 4.652045e-01	ci left: 4.547397e-05	ci right 7.370009e-05	k: 70	n:1200000
Cons ci ratio: 3.266661e-06	ci left: 9.999969e-01	ci right 1	k: 1200000	n:1200000
KS ci ratio: 1.181919e+00	ci left: 3.996164e-06	ci right 1.532524e-05	k: 10	n:1200000
TNFRSF10C   1200000 perm   809 sec   (1483 perm/sec)   p_kst 8.333333e-06   p_cons 1   p_joint 5.833333e-05

Joint ci ratio: 4.619625e-01	ci left: 4.582804e-05	ci right 7.401335e-05	k: 71	n:1210000
Cons ci ratio: 3.239664e-06	ci left: 9.999970e-01	ci right 1	k: 1210000	n:1210000
KS ci ratio: 1.131600e+00	ci left: 4.538158e-06	ci right 1.626609e-05	k: 11	n:1210000
TNFRSF10C   1210000 perm   821 sec   (1474 perm/sec)   p_kst 9.090909e-06   p_cons 1   p_joint 5.867769e-05

Joint ci ratio: 4.587874e-01	ci left: 4.617697e-05	ci right 7.432081e-05	k: 72	n:1220000
Cons ci ratio: 3.213109e-06	ci left: 9.999970e-01	ci right 1	k: 1220000	n:1220000
KS ci ratio: 1.131600e+00	ci left: 4.500959e-06	ci right 1.613276e-05	k: 11	n:1220000
TNFRSF10C   1220000 perm   833 sec   (1465 perm/sec)   p_kst 9.016393e-06   p_cons 1   p_joint 5.901639e-05

Joint ci ratio: 4.556769e-01	ci left: 4.652089e-05	ci right 7.462263e-05	k: 73	n:1230000
Cons ci ratio: 3.186987e-06	ci left: 9.999970e-01	ci right 1	k: 1230000	n:1230000
KS ci ratio: 1.131601e+00	ci left: 4.464366e-06	ci right 1.600160e-05	k: 11	n:1230000
TNFRSF10C   1230000 perm   845 sec   (1456 perm/sec)   p_kst 8.943089e-06   p_cons 1   p_joint 5.934959e-05

Joint ci ratio: 4.526287e-01	ci left: 4.685989e-05	ci right 7.491896e-05	k: 74	n:1240000
Cons ci ratio: 3.161285e-06	ci left: 9.999970e-01	ci right 1	k: 1240000	n:1240000
KS ci ratio: 1.131601e+00	ci left: 4.428363e-06	ci right 1.587256e-05	k: 11	n:1240000
TNFRSF10C   1240000 perm   857 sec   (1447 perm/sec)   p_kst 8.870968e-06   p_cons 1   p_joint 5.967742e-05

Joint ci ratio: 4.526289e-01	ci left: 4.648501e-05	ci right 7.431962e-05	k: 74	n:1250000
Cons ci ratio: 3.135995e-06	ci left: 9.999970e-01	ci right 1	k: 1250000	n:1250000
KS ci ratio: 1.131601e+00	ci left: 4.392936e-06	ci right 1.574558e-05	k: 11	n:1250000
TNFRSF10C   1250000 perm   869 sec   (1439 perm/sec)   p_kst 8.800000e-06   p_cons 1   p_joint 5.920000e-05

Joint ci ratio: 4.496411e-01	ci left: 4.681953e-05	ci right 7.461305e-05	k: 75	n:1260000
Cons ci ratio: 3.111106e-06	ci left: 9.999971e-01	ci right 1	k: 1260000	n:1260000
KS ci ratio: 1.131601e+00	ci left: 4.358072e-06	ci right 1.562061e-05	k: 11	n:1260000
TNFRSF10C   1260000 perm   881 sec   (1430 perm/sec)   p_kst 8.730159e-06   p_cons 1   p_joint 5.952381e-05

Joint ci ratio: 4.496412e-01	ci left: 4.645087e-05	ci right 7.402555e-05	k: 75	n:1270000
Cons ci ratio: 3.086609e-06	ci left: 9.999971e-01	ci right 1	k: 1270000	n:1270000
KS ci ratio: 1.131601e+00	ci left: 4.323756e-06	ci right 1.549762e-05	k: 11	n:1270000
TNFRSF10C   1270000 perm   893 sec   (1421 perm/sec)   p_kst 8.661417e-06   p_cons 1   p_joint 5.905512e-05

Joint ci ratio: 4.438389e-01	ci left: 4.747465e-05	ci right 7.518443e-05	k: 77	n:1280000
Cons ci ratio: 3.062495e-06	ci left: 9.999971e-01	ci right 1	k: 1280000	n:1280000
KS ci ratio: 1.131601e+00	ci left: 4.289977e-06	ci right 1.537654e-05	k: 11	n:1280000
TNFRSF10C   1280000 perm   906 sec   (1413 perm/sec)   p_kst 8.593750e-06   p_cons 1   p_joint 6.015625e-05

Joint ci ratio: 4.410208e-01	ci left: 4.779545e-05	ci right 7.546264e-05	k: 78	n:1290000
Cons ci ratio: 3.038755e-06	ci left: 9.999971e-01	ci right 1	k: 1290000	n:1290000
KS ci ratio: 1.131601e+00	ci left: 4.256721e-06	ci right 1.525734e-05	k: 11	n:1290000
TNFRSF10C   1290000 perm   918 sec   (1405 perm/sec)   p_kst 8.527132e-06   p_cons 1   p_joint 6.046512e-05

Joint ci ratio: 4.410209e-01	ci left: 4.742779e-05	ci right 7.488216e-05	k: 78	n:1300000
Cons ci ratio: 3.015380e-06	ci left: 9.999972e-01	ci right 1	k: 1300000	n:1300000
KS ci ratio: 1.131601e+00	ci left: 4.223977e-06	ci right 1.513998e-05	k: 11	n:1300000
TNFRSF10C   1300000 perm   930 sec   (1397 perm/sec)   p_kst 8.461538e-06   p_cons 1   p_joint 6.000000e-05

Joint ci ratio: 4.467122e-01	ci left: 4.570970e-05	ci right 7.261423e-05	k: 76	n:1310000
Cons ci ratio: 2.992362e-06	ci left: 9.999972e-01	ci right 1	k: 1310000	n:1310000
KS ci ratio: 1.131601e+00	ci left: 4.191733e-06	ci right 1.502441e-05	k: 11	n:1310000
TNFRSF10C   1310000 perm   943 sec   (1390 perm/sec)   p_kst 8.396947e-06   p_cons 1   p_joint 5.801527e-05

Joint ci ratio: 4.467123e-01	ci left: 4.536341e-05	ci right 7.206412e-05	k: 76	n:1320000
Cons ci ratio: 2.969692e-06	ci left: 9.999972e-01	ci right 1	k: 1320000	n:1320000
KS ci ratio: 1.131601e+00	ci left: 4.159977e-06	ci right 1.491059e-05	k: 11	n:1320000
TNFRSF10C   1320000 perm   955 sec   (1382 perm/sec)   p_kst 8.333333e-06   p_cons 1   p_joint 5.757576e-05

Joint ci ratio: 4.467124e-01	ci left: 4.502233e-05	ci right 7.152229e-05	k: 76	n:1330000
Cons ci ratio: 2.947364e-06	ci left: 9.999972e-01	ci right 1	k: 1330000	n:1330000
KS ci ratio: 1.131601e+00	ci left: 4.128699e-06	ci right 1.479848e-05	k: 11	n:1330000
TNFRSF10C   1330000 perm   968 sec   (1374 perm/sec)   p_kst 8.270677e-06   p_cons 1   p_joint 5.714286e-05

Joint ci ratio: 4.467125e-01	ci left: 4.468634e-05	ci right 7.098855e-05	k: 76	n:1340000
Cons ci ratio: 2.925369e-06	ci left: 9.999972e-01	ci right 1	k: 1340000	n:1340000
KS ci ratio: 1.131601e+00	ci left: 4.097888e-06	ci right 1.468804e-05	k: 11	n:1340000
TNFRSF10C   1340000 perm   981 sec   (1366 perm/sec)   p_kst 8.208955e-06   p_cons 1   p_joint 5.671642e-05

Joint ci ratio: 4.467126e-01	ci left: 4.435533e-05	ci right 7.046271e-05	k: 76	n:1350000
Cons ci ratio: 2.903699e-06	ci left: 9.999973e-01	ci right 1	k: 1350000	n:1350000
KS ci ratio: 1.131601e+00	ci left: 4.067533e-06	ci right 1.457924e-05	k: 11	n:1350000
TNFRSF10C   1350000 perm   993 sec   (1359 perm/sec)   p_kst 8.148148e-06   p_cons 1   p_joint 5.629630e-05

Joint ci ratio: 4.467126e-01	ci left: 4.402918e-05	ci right 6.994461e-05	k: 76	n:1360000
Cons ci ratio: 2.882349e-06	ci left: 9.999973e-01	ci right 1	k: 1360000	n:1360000
KS ci ratio: 1.087207e+00	ci left: 4.559254e-06	ci right 1.541288e-05	k: 12	n:1360000
TNFRSF10C   1360000 perm   1006 sec   (1352 perm/sec)   p_kst 8.823529e-06   p_cons 1   p_joint 5.588235e-05

Joint ci ratio: 4.438398e-01	ci left: 4.435586e-05	ci right 7.024534e-05	k: 77	n:1370000
Cons ci ratio: 2.861310e-06	ci left: 9.999973e-01	ci right 1	k: 1370000	n:1370000
KS ci ratio: 1.087207e+00	ci left: 4.525975e-06	ci right 1.530038e-05	k: 12	n:1370000
TNFRSF10C   1370000 perm   1019 sec   (1344 perm/sec)   p_kst 8.759124e-06   p_cons 1   p_joint 5.620438e-05

Joint ci ratio: 4.788924e-01	ci left: 3.698888e-05	ci right 6.084611e-05	k: 66	n:1380000
Cons ci ratio: 2.840576e-06	ci left: 9.999973e-01	ci right 1	k: 1380000	n:1380000
KS ci ratio: 1.087207e+00	ci left: 4.493178e-06	ci right 1.518951e-05	k: 12	n:1380000
TNFRSF10C   1380000 perm   1032 sec   (1337 perm/sec)   p_kst 8.695652e-06   p_cons 1   p_joint 4.782609e-05

Joint ci ratio: 4.753580e-01	ci left: 3.735564e-05	ci right 6.121373e-05	k: 67	n:1390000
Cons ci ratio: 2.820140e-06	ci left: 9.999973e-01	ci right 1	k: 1390000	n:1390000
KS ci ratio: 1.087207e+00	ci left: 4.460853e-06	ci right 1.508023e-05	k: 12	n:1390000
TNFRSF10C   1390000 perm   1047 sec   (1328 perm/sec)   p_kst 8.633094e-06   p_cons 1   p_joint 4.820144e-05

Joint ci ratio: 4.719007e-01	ci left: 3.771781e-05	ci right 6.157546e-05	k: 68	n:1400000
Cons ci ratio: 2.799996e-06	ci left: 9.999974e-01	ci right 1	k: 1400000	n:1400000
KS ci ratio: 1.087207e+00	ci left: 4.428990e-06	ci right 1.497251e-05	k: 12	n:1400000
TNFRSF10C   1400000 perm   1064 sec   (1316 perm/sec)   p_kst 8.571429e-06   p_cons 1   p_joint 4.857143e-05

Joint ci ratio: 4.719008e-01	ci left: 3.745030e-05	ci right 6.113876e-05	k: 68	n:1410000
Cons ci ratio: 2.780138e-06	ci left: 9.999974e-01	ci right 1	k: 1410000	n:1410000
KS ci ratio: 1.087207e+00	ci left: 4.397578e-06	ci right 1.486633e-05	k: 12	n:1410000
TNFRSF10C   1410000 perm   1077 sec   (1309 perm/sec)   p_kst 8.510638e-06   p_cons 1   p_joint 4.822695e-05

Joint ci ratio: 4.685179e-01	ci left: 3.780732e-05	ci right 6.149532e-05	k: 69	n:1420000
Cons ci ratio: 2.760559e-06	ci left: 9.999974e-01	ci right 1	k: 1420000	n:1420000
KS ci ratio: 1.087207e+00	ci left: 4.366610e-06	ci right 1.476163e-05	k: 12	n:1420000
TNFRSF10C   1420000 perm   1091 sec   (1302 perm/sec)   p_kst 8.450704e-06   p_cons 1   p_joint 4.859155e-05

Joint ci ratio: 4.652067e-01	ci left: 3.815994e-05	ci right 6.184631e-05	k: 70	n:1430000
Cons ci ratio: 2.741255e-06	ci left: 9.999974e-01	ci right 1	k: 1430000	n:1430000
KS ci ratio: 1.087207e+00	ci left: 4.336074e-06	ci right 1.465841e-05	k: 12	n:1430000
TNFRSF10C   1430000 perm   1104 sec   (1295 perm/sec)   p_kst 8.391608e-06   p_cons 1   p_joint 4.895105e-05

Joint ci ratio: 4.619647e-01	ci left: 3.850824e-05	ci right 6.219185e-05	k: 71	n:1440000
Cons ci ratio: 2.722218e-06	ci left: 9.999974e-01	ci right 1	k: 1440000	n:1440000
KS ci ratio: 1.087207e+00	ci left: 4.305962e-06	ci right 1.455661e-05	k: 12	n:1440000
TNFRSF10C   1440000 perm   1118 sec   (1288 perm/sec)   p_kst 8.333333e-06   p_cons 1   p_joint 4.930556e-05

Joint ci ratio: 4.619648e-01	ci left: 3.824267e-05	ci right 6.176294e-05	k: 71	n:1450000
Cons ci ratio: 2.703445e-06	ci left: 9.999975e-01	ci right 1	k: 1450000	n:1450000
KS ci ratio: 1.087207e+00	ci left: 4.276266e-06	ci right 1.445622e-05	k: 12	n:1450000
TNFRSF10C   1450000 perm   1132 sec   (1281 perm/sec)   p_kst 8.275862e-06   p_cons 1   p_joint 4.896552e-05

Joint ci ratio: 4.619649e-01	ci left: 3.798073e-05	ci right 6.133991e-05	k: 71	n:1460000
Cons ci ratio: 2.684928e-06	ci left: 9.999975e-01	ci right 1	k: 1460000	n:1460000
KS ci ratio: 1.087207e+00	ci left: 4.246976e-06	ci right 1.435721e-05	k: 12	n:1460000
TNFRSF10C   1460000 perm   1146 sec   (1274 perm/sec)   p_kst 8.219178e-06   p_cons 1   p_joint 4.863014e-05

Joint ci ratio: 4.619650e-01	ci left: 3.772236e-05	ci right 6.092264e-05	k: 71	n:1470000
Cons ci ratio: 2.666663e-06	ci left: 9.999975e-01	ci right 1	k: 1470000	n:1470000
KS ci ratio: 1.087207e+00	ci left: 4.218085e-06	ci right 1.425954e-05	k: 12	n:1470000
TNFRSF10C   1470000 perm   1160 sec   (1268 perm/sec)   p_kst 8.163265e-06   p_cons 1   p_joint 4.829932e-05

Joint ci ratio: 4.619650e-01	ci left: 3.746747e-05	ci right 6.051100e-05	k: 71	n:1480000
Cons ci ratio: 2.648645e-06	ci left: 9.999975e-01	ci right 1	k: 1480000	n:1480000
KS ci ratio: 1.087207e+00	ci left: 4.189585e-06	ci right 1.416319e-05	k: 12	n:1480000
TNFRSF10C   1480000 perm   1174 sec   (1261 perm/sec)   p_kst 8.108108e-06   p_cons 1   p_joint 4.797297e-05

Joint ci ratio: 4.556793e-01	ci left: 3.840311e-05	ci right 6.160132e-05	k: 73	n:1490000
Cons ci ratio: 2.630869e-06	ci left: 9.999975e-01	ci right 1	k: 1490000	n:1490000
KS ci ratio: 1.047659e+00	ci left: 4.645614e-06	ci right 1.491968e-05	k: 13	n:1490000
TNFRSF10C   1490000 perm   1188 sec   (1254 perm/sec)   p_kst 8.724832e-06   p_cons 1   p_joint 4.899329e-05

Joint ci ratio: 5.843501e-01	ci left: 2.131372e-05	ci right 3.937843e-05	k: 44	n:1500000
Cons ci ratio: 2.613330e-06	ci left: 9.999975e-01	ci right 1	k: 1500000	n:1500000
KS ci ratio: 1.047659e+00	ci left: 4.614643e-06	ci right 1.482022e-05	k: 13	n:1500000
TNFRSF10C   1500000 perm   1202 sec   (1248 perm/sec)   p_kst 8.666667e-06   p_cons 1   p_joint 2.933333e-05

Joint ci ratio: 5.779635e-01	ci left: 2.173737e-05	ci right 3.987632e-05	k: 45	n:1510000
Cons ci ratio: 2.596023e-06	ci left: 9.999976e-01	ci right 1	k: 1510000	n:1510000
KS ci ratio: 1.012134e+00	ci left: 5.068837e-06	ci right 1.555599e-05	k: 14	n:1510000
TNFRSF10C   1510000 perm   1216 sec   (1241 perm/sec)   p_kst 9.271523e-06   p_cons 1   p_joint 2.980132e-05

Joint ci ratio: 5.717817e-01	ci left: 2.215652e-05	ci right 4.036661e-05	k: 46	n:1520000
Cons ci ratio: 2.578944e-06	ci left: 9.999976e-01	ci right 1	k: 1520000	n:1520000
KS ci ratio: 1.012134e+00	ci left: 5.035489e-06	ci right 1.545365e-05	k: 14	n:1520000
TNFRSF10C   1520000 perm   1231 sec   (1235 perm/sec)   p_kst 9.210526e-06   p_cons 1   p_joint 3.026316e-05

Joint ci ratio: 5.909535e-01	ci left: 2.033949e-05	ci right 3.785649e-05	k: 43	n:1530000
Cons ci ratio: 2.562088e-06	ci left: 9.999976e-01	ci right 1	k: 1530000	n:1530000
KS ci ratio: 1.012134e+00	ci left: 5.002578e-06	ci right 1.535265e-05	k: 14	n:1530000
TNFRSF10C   1530000 perm   1245 sec   (1229 perm/sec)   p_kst 9.150327e-06   p_cons 1   p_joint 2.810458e-05

Joint ci ratio: 5.843504e-01	ci left: 2.076012e-05	ci right 3.835562e-05	k: 44	n:1540000
Cons ci ratio: 2.545451e-06	ci left: 9.999976e-01	ci right 1	k: 1540000	n:1540000
KS ci ratio: 1.012134e+00	ci left: 4.970093e-06	ci right 1.525295e-05	k: 14	n:1540000
TNFRSF10C   1540000 perm   1260 sec   (1223 perm/sec)   p_kst 9.090909e-06   p_cons 1   p_joint 2.857143e-05

Joint ci ratio: 5.843504e-01	ci left: 2.062618e-05	ci right 3.810817e-05	k: 44	n:1550000
Cons ci ratio: 2.529029e-06	ci left: 9.999976e-01	ci right 1	k: 1550000	n:1550000
KS ci ratio: 1.012134e+00	ci left: 4.938028e-06	ci right 1.515455e-05	k: 14	n:1550000
TNFRSF10C   1550000 perm   1274 sec   (1216 perm/sec)   p_kst 9.032258e-06   p_cons 1   p_joint 2.838710e-05

Joint ci ratio: 5.843505e-01	ci left: 2.049396e-05	ci right 3.786389e-05	k: 44	n:1560000
Cons ci ratio: 2.512817e-06	ci left: 9.999976e-01	ci right 1	k: 1560000	n:1560000
KS ci ratio: 1.012134e+00	ci left: 4.906374e-06	ci right 1.505740e-05	k: 14	n:1560000
TNFRSF10C   1560000 perm   1289 sec   (1210 perm/sec)   p_kst 8.974359e-06   p_cons 1   p_joint 2.820513e-05

Joint ci ratio: 5.779638e-01	ci left: 2.090664e-05	ci right 3.835239e-05	k: 45	n:1570000
Cons ci ratio: 2.496812e-06	ci left: 9.999977e-01	ci right 1	k: 1570000	n:1570000
KS ci ratio: 9.799947e-01	ci left: 5.347389e-06	ci right 1.575805e-05	k: 15	n:1570000
TNFRSF10C   1570000 perm   1304 sec   (1204 perm/sec)   p_kst 9.554140e-06   p_cons 1   p_joint 2.866242e-05

Joint ci ratio: 5.779639e-01	ci left: 2.077432e-05	ci right 3.810965e-05	k: 45	n:1580000
Cons ci ratio: 2.481010e-06	ci left: 9.999977e-01	ci right 1	k: 1580000	n:1580000
KS ci ratio: 9.799947e-01	ci left: 5.313545e-06	ci right 1.565832e-05	k: 15	n:1580000
TNFRSF10C   1580000 perm   1319 sec   (1198 perm/sec)   p_kst 9.493671e-06   p_cons 1   p_joint 2.848101e-05

Joint ci ratio: 5.779639e-01	ci left: 2.064366e-05	ci right 3.786997e-05	k: 45	n:1590000
Cons ci ratio: 2.465406e-06	ci left: 9.999977e-01	ci right 1	k: 1590000	n:1590000
KS ci ratio: 9.799948e-01	ci left: 5.280126e-06	ci right 1.555984e-05	k: 15	n:1590000
TNFRSF10C   1590000 perm   1334 sec   (1192 perm/sec)   p_kst 9.433962e-06   p_cons 1   p_joint 2.830189e-05

Joint ci ratio: 5.779640e-01	ci left: 2.051464e-05	ci right 3.763328e-05	k: 45	n:1600000
Cons ci ratio: 2.449997e-06	ci left: 9.999977e-01	ci right 1	k: 1600000	n:1600000
KS ci ratio: 9.799948e-01	ci left: 5.247126e-06	ci right 1.546259e-05	k: 15	n:1600000
TNFRSF10C   1600000 perm   1349 sec   (1186 perm/sec)   p_kst 9.375000e-06   p_cons 1   p_joint 2.812500e-05

Joint ci ratio: 5.779640e-01	ci left: 2.038722e-05	ci right 3.739954e-05	k: 45	n:1610000
Cons ci ratio: 2.434780e-06	ci left: 9.999977e-01	ci right 1	k: 1610000	n:1610000
KS ci ratio: 9.799948e-01	ci left: 5.214535e-06	ci right 1.536655e-05	k: 15	n:1610000
TNFRSF10C   1610000 perm   1364 sec   (1181 perm/sec)   p_kst 9.316770e-06   p_cons 1   p_joint 2.795031e-05

Joint ci ratio: 5.779641e-01	ci left: 2.026137e-05	ci right 3.716868e-05	k: 45	n:1620000
Cons ci ratio: 2.419750e-06	ci left: 9.999977e-01	ci right 1	k: 1620000	n:1620000
KS ci ratio: 9.799949e-01	ci left: 5.182346e-06	ci right 1.527169e-05	k: 15	n:1620000
TNFRSF10C   1620000 perm   1379 sec   (1175 perm/sec)   p_kst 9.259259e-06   p_cons 1   p_joint 2.777778e-05

Joint ci ratio: 5.779641e-01	ci left: 2.013707e-05	ci right 3.694065e-05	k: 45	n:1630000
Cons ci ratio: 2.404905e-06	ci left: 9.999977e-01	ci right 1	k: 1630000	n:1630000
KS ci ratio: 9.799949e-01	ci left: 5.150552e-06	ci right 1.517800e-05	k: 15	n:1630000
TNFRSF10C   1630000 perm   1394 sec   (1169 perm/sec)   p_kst 9.202454e-06   p_cons 1   p_joint 2.760736e-05

Joint ci ratio: 5.779642e-01	ci left: 2.001428e-05	ci right 3.671540e-05	k: 45	n:1640000
Cons ci ratio: 2.390241e-06	ci left: 9.999978e-01	ci right 1	k: 1640000	n:1640000
KS ci ratio: 9.799949e-01	ci left: 5.119147e-06	ci right 1.508545e-05	k: 15	n:1640000
TNFRSF10C   1640000 perm   1410 sec   (1163 perm/sec)   p_kst 9.146341e-06   p_cons 1   p_joint 2.743902e-05

Joint ci ratio: 5.779642e-01	ci left: 1.989298e-05	ci right 3.649289e-05	k: 45	n:1650000
Cons ci ratio: 2.375755e-06	ci left: 9.999978e-01	ci right 1	k: 1650000	n:1650000
KS ci ratio: 9.799950e-01	ci left: 5.088121e-06	ci right 1.499403e-05	k: 15	n:1650000
TNFRSF10C   1650000 perm   1425 sec   (1158 perm/sec)   p_kst 9.090909e-06   p_cons 1   p_joint 2.727273e-05

Joint ci ratio: 5.717825e-01	ci left: 2.028789e-05	ci right 3.696221e-05	k: 46	n:1660000
Cons ci ratio: 2.361443e-06	ci left: 9.999978e-01	ci right 1	k: 1660000	n:1660000
KS ci ratio: 9.799950e-01	ci left: 5.057470e-06	ci right 1.490370e-05	k: 15	n:1660000
TNFRSF10C   1660000 perm   1441 sec   (1152 perm/sec)   p_kst 9.036145e-06   p_cons 1   p_joint 2.771084e-05

Joint ci ratio: 5.717825e-01	ci left: 2.016640e-05	ci right 3.674088e-05	k: 46	n:1670000
Cons ci ratio: 2.347303e-06	ci left: 9.999978e-01	ci right 1	k: 1670000	n:1670000
KS ci ratio: 9.799950e-01	ci left: 5.027186e-06	ci right 1.481446e-05	k: 15	n:1670000
TNFRSF10C   1670000 perm   1456 sec   (1147 perm/sec)   p_kst 8.982036e-06   p_cons 1   p_joint 2.754491e-05

Joint ci ratio: 5.717826e-01	ci left: 2.004637e-05	ci right 3.652219e-05	k: 46	n:1680000
Cons ci ratio: 2.333331e-06	ci left: 9.999978e-01	ci right 1	k: 1680000	n:1680000
KS ci ratio: 9.799950e-01	ci left: 4.997262e-06	ci right 1.472628e-05	k: 15	n:1680000
TNFRSF10C   1680000 perm   1472 sec   (1141 perm/sec)   p_kst 8.928571e-06   p_cons 1   p_joint 2.738095e-05

Joint ci ratio: 7.156842e-01	ci left: 1.149219e-05	ci right 2.464419e-05	k: 29	n:1690000
Cons ci ratio: 2.319524e-06	ci left: 9.999978e-01	ci right 1	k: 1690000	n:1690000
KS ci ratio: 9.799951e-01	ci left: 4.967692e-06	ci right 1.463914e-05	k: 15	n:1690000
TNFRSF10C   1690000 perm   1488 sec   (1136 perm/sec)   p_kst 8.875740e-06   p_cons 1   p_joint 1.715976e-05

Joint ci ratio: 7.156843e-01	ci left: 1.142459e-05	ci right 2.449922e-05	k: 29	n:1700000
Cons ci ratio: 2.305880e-06	ci left: 9.999978e-01	ci right 1	k: 1700000	n:1700000
KS ci ratio: 9.799951e-01	ci left: 4.938471e-06	ci right 1.455303e-05	k: 15	n:1700000
TNFRSF10C   1700000 perm   1504 sec   (1130 perm/sec)   p_kst 8.823529e-06   p_cons 1   p_joint 1.705882e-05

Joint ci ratio: 7.040462e-01	ci left: 1.183680e-05	ci right 2.504486e-05	k: 30	n:1710000
Cons ci ratio: 2.292395e-06	ci left: 9.999978e-01	ci right 1	k: 1710000	n:1710000
KS ci ratio: 9.507346e-01	ci left: 5.348186e-06	ci right 1.519469e-05	k: 16	n:1710000
TNFRSF10C   1710000 perm   1520 sec   (1125 perm/sec)   p_kst 9.356725e-06   p_cons 1   p_joint 1.754386e-05

Joint ci ratio: 7.040462e-01	ci left: 1.176798e-05	ci right 2.489925e-05	k: 30	n:1720000
Cons ci ratio: 2.279067e-06	ci left: 9.999979e-01	ci right 1	k: 1720000	n:1720000
KS ci ratio: 9.507347e-01	ci left: 5.317092e-06	ci right 1.510635e-05	k: 16	n:1720000
TNFRSF10C   1720000 perm   1536 sec   (1120 perm/sec)   p_kst 9.302326e-06   p_cons 1   p_joint 1.744186e-05

Joint ci ratio: 7.040463e-01	ci left: 1.169996e-05	ci right 2.475532e-05	k: 30	n:1730000
Cons ci ratio: 2.265893e-06	ci left: 9.999979e-01	ci right 1	k: 1730000	n:1730000
KS ci ratio: 9.507347e-01	ci left: 5.286357e-06	ci right 1.501903e-05	k: 16	n:1730000
TNFRSF10C   1730000 perm   1552 sec   (1114 perm/sec)   p_kst 9.248555e-06   p_cons 1   p_joint 1.734104e-05

Joint ci ratio: 7.040463e-01	ci left: 1.163272e-05	ci right 2.461305e-05	k: 30	n:1740000
Cons ci ratio: 2.252871e-06	ci left: 9.999979e-01	ci right 1	k: 1740000	n:1740000
KS ci ratio: 9.507347e-01	ci left: 5.255976e-06	ci right 1.493271e-05	k: 16	n:1740000
TNFRSF10C   1740000 perm   1569 sec   (1109 perm/sec)   p_kst 9.195402e-06   p_cons 1   p_joint 1.724138e-05

Joint ci ratio: 7.040463e-01	ci left: 1.156624e-05	ci right 2.447240e-05	k: 30	n:1750000
Cons ci ratio: 2.239997e-06	ci left: 9.999979e-01	ci right 1	k: 1750000	n:1750000
KS ci ratio: 9.507348e-01	ci left: 5.225942e-06	ci right 1.484738e-05	k: 16	n:1750000
TNFRSF10C   1750000 perm   1585 sec   (1104 perm/sec)   p_kst 9.142857e-06   p_cons 1   p_joint 1.714286e-05

Joint ci ratio: 7.040464e-01	ci left: 1.150053e-05	ci right 2.433336e-05	k: 30	n:1760000
Cons ci ratio: 2.227270e-06	ci left: 9.999979e-01	ci right 1	k: 1760000	n:1760000
KS ci ratio: 9.507348e-01	ci left: 5.196249e-06	ci right 1.476302e-05	k: 16	n:1760000
TNFRSF10C   1760000 perm   1602 sec   (1099 perm/sec)   p_kst 9.090909e-06   p_cons 1   p_joint 1.704545e-05

Joint ci ratio: 7.040464e-01	ci left: 1.143555e-05	ci right 2.419588e-05	k: 30	n:1770000
Cons ci ratio: 2.214687e-06	ci left: 9.999979e-01	ci right 1	k: 1770000	n:1770000
KS ci ratio: 9.507348e-01	ci left: 5.166891e-06	ci right 1.467962e-05	k: 16	n:1770000
TNFRSF10C   1770000 perm   1618 sec   (1094 perm/sec)   p_kst 9.039548e-06   p_cons 1   p_joint 1.694915e-05

Joint ci ratio: 7.040465e-01	ci left: 1.137131e-05	ci right 2.405995e-05	k: 30	n:1780000
Cons ci ratio: 2.202245e-06	ci left: 9.999979e-01	ci right 1	k: 1780000	n:1780000
KS ci ratio: 9.507348e-01	ci left: 5.137864e-06	ci right 1.459715e-05	k: 16	n:1780000
TNFRSF10C   1780000 perm   1635 sec   (1089 perm/sec)   p_kst 8.988764e-06   p_cons 1   p_joint 1.685393e-05

Joint ci ratio: 7.040465e-01	ci left: 1.130778e-05	ci right 2.392554e-05	k: 30	n:1790000
Cons ci ratio: 2.189942e-06	ci left: 9.999979e-01	ci right 1	k: 1790000	n:1790000
KS ci ratio: 9.507349e-01	ci left: 5.109161e-06	ci right 1.451560e-05	k: 16	n:1790000
TNFRSF10C   1790000 perm   1652 sec   (1084 perm/sec)   p_kst 8.938547e-06   p_cons 1   p_joint 1.675978e-05

Joint ci ratio: 7.040465e-01	ci left: 1.124496e-05	ci right 2.379262e-05	k: 30	n:1800000
Cons ci ratio: 2.177775e-06	ci left: 9.999980e-01	ci right 1	k: 1800000	n:1800000
KS ci ratio: 9.507349e-01	ci left: 5.080776e-06	ci right 1.443496e-05	k: 16	n:1800000
TNFRSF10C   1800000 perm   1668 sec   (1079 perm/sec)   p_kst 8.888889e-06   p_cons 1   p_joint 1.666667e-05

Joint ci ratio: 7.040466e-01	ci left: 1.118283e-05	ci right 2.366117e-05	k: 30	n:1810000
Cons ci ratio: 2.165743e-06	ci left: 9.999980e-01	ci right 1	k: 1810000	n:1810000
KS ci ratio: 9.507349e-01	ci left: 5.052706e-06	ci right 1.435521e-05	k: 16	n:1810000
TNFRSF10C   1810000 perm   1685 sec   (1074 perm/sec)   p_kst 8.839779e-06   p_cons 1   p_joint 1.657459e-05

Joint ci ratio: 7.040466e-01	ci left: 1.112139e-05	ci right 2.353116e-05	k: 30	n:1820000
Cons ci ratio: 2.153844e-06	ci left: 9.999980e-01	ci right 1	k: 1820000	n:1820000
KS ci ratio: 9.507349e-01	ci left: 5.024943e-06	ci right 1.427633e-05	k: 16	n:1820000
TNFRSF10C   1820000 perm   1702 sec   (1069 perm/sec)   p_kst 8.791209e-06   p_cons 1   p_joint 1.648352e-05

Joint ci ratio: 7.040466e-01	ci left: 1.106061e-05	ci right 2.340258e-05	k: 30	n:1830000
Cons ci ratio: 2.142074e-06	ci left: 9.999980e-01	ci right 1	k: 1830000	n:1830000
KS ci ratio: 9.507350e-01	ci left: 4.997485e-06	ci right 1.419832e-05	k: 16	n:1830000
TNFRSF10C   1830000 perm   1719 sec   (1065 perm/sec)   p_kst 8.743169e-06   p_cons 1   p_joint 1.639344e-05

Joint ci ratio: 6.929584e-01	ci left: 1.144731e-05	ci right 2.391406e-05	k: 31	n:1840000
Cons ci ratio: 2.130432e-06	ci left: 9.999980e-01	ci right 1	k: 1840000	n:1840000
KS ci ratio: 9.239481e-01	ci left: 5.382143e-06	ci right 1.479270e-05	k: 17	n:1840000
TNFRSF10C   1840000 perm   1736 sec   (1060 perm/sec)   p_kst 9.239130e-06   p_cons 1   p_joint 1.684783e-05

Joint ci ratio: 6.929585e-01	ci left: 1.138543e-05	ci right 2.378480e-05	k: 31	n:1850000
Cons ci ratio: 2.118917e-06	ci left: 9.999980e-01	ci right 1	k: 1850000	n:1850000
KS ci ratio: 9.239481e-01	ci left: 5.353050e-06	ci right 1.471274e-05	k: 17	n:1850000
TNFRSF10C   1850000 perm   1754 sec   (1055 perm/sec)   p_kst 9.189189e-06   p_cons 1   p_joint 1.675676e-05

Joint ci ratio: 6.929585e-01	ci left: 1.132422e-05	ci right 2.365692e-05	k: 31	n:1860000
Cons ci ratio: 2.107525e-06	ci left: 9.999980e-01	ci right 1	k: 1860000	n:1860000
KS ci ratio: 9.239481e-01	ci left: 5.324270e-06	ci right 1.463364e-05	k: 17	n:1860000
TNFRSF10C   1860000 perm   1771 sec   (1050 perm/sec)   p_kst 9.139785e-06   p_cons 1   p_joint 1.666667e-05

Joint ci ratio: 6.929585e-01	ci left: 1.126366e-05	ci right 2.353041e-05	k: 31	n:1870000
Cons ci ratio: 2.096254e-06	ci left: 9.999980e-01	ci right 1	k: 1870000	n:1870000
KS ci ratio: 9.239482e-01	ci left: 5.295798e-06	ci right 1.455539e-05	k: 17	n:1870000
TNFRSF10C   1870000 perm   1788 sec   (1046 perm/sec)   p_kst 9.090909e-06   p_cons 1   p_joint 1.657754e-05

Joint ci ratio: 6.929586e-01	ci left: 1.120375e-05	ci right 2.340525e-05	k: 31	n:1880000
Cons ci ratio: 2.085104e-06	ci left: 9.999980e-01	ci right 1	k: 1880000	n:1880000
KS ci ratio: 9.239482e-01	ci left: 5.267629e-06	ci right 1.447796e-05	k: 17	n:1880000
TNFRSF10C   1880000 perm   1806 sec   (1041 perm/sec)   p_kst 9.042553e-06   p_cons 1   p_joint 1.648936e-05

Joint ci ratio: 6.929586e-01	ci left: 1.114447e-05	ci right 2.328141e-05	k: 31	n:1890000
Cons ci ratio: 2.074072e-06	ci left: 9.999980e-01	ci right 1	k: 1890000	n:1890000
KS ci ratio: 9.239482e-01	ci left: 5.239758e-06	ci right 1.440136e-05	k: 17	n:1890000
TNFRSF10C   1890000 perm   1823 sec   (1036 perm/sec)   p_kst 8.994709e-06   p_cons 1   p_joint 1.640212e-05

Joint ci ratio: 6.929586e-01	ci left: 1.108581e-05	ci right 2.315888e-05	k: 31	n:1900000
Cons ci ratio: 2.063156e-06	ci left: 9.999981e-01	ci right 1	k: 1900000	n:1900000
KS ci ratio: 9.239482e-01	ci left: 5.212180e-06	ci right 1.432557e-05	k: 17	n:1900000
TNFRSF10C   1900000 perm   1841 sec   (1032 perm/sec)   p_kst 8.947368e-06   p_cons 1   p_joint 1.631579e-05

Joint ci ratio: 6.929587e-01	ci left: 1.102777e-05	ci right 2.303763e-05	k: 31	n:1910000
Cons ci ratio: 2.052354e-06	ci left: 9.999981e-01	ci right 1	k: 1910000	n:1910000
KS ci ratio: 9.239483e-01	ci left: 5.184891e-06	ci right 1.425056e-05	k: 17	n:1910000
TNFRSF10C   1910000 perm   1859 sec   (1027 perm/sec)   p_kst 8.900524e-06   p_cons 1   p_joint 1.623037e-05

Joint ci ratio: 6.929587e-01	ci left: 1.097034e-05	ci right 2.291764e-05	k: 31	n:1920000
Cons ci ratio: 2.041665e-06	ci left: 9.999981e-01	ci right 1	k: 1920000	n:1920000
KS ci ratio: 9.239483e-01	ci left: 5.157887e-06	ci right 1.417634e-05	k: 17	n:1920000
TNFRSF10C   1920000 perm   1877 sec   (1023 perm/sec)   p_kst 8.854167e-06   p_cons 1   p_joint 1.614583e-05

Joint ci ratio: 6.929587e-01	ci left: 1.091349e-05	ci right 2.279890e-05	k: 31	n:1930000
Cons ci ratio: 2.031086e-06	ci left: 9.999981e-01	ci right 1	k: 1930000	n:1930000
KS ci ratio: 9.239483e-01	ci left: 5.131162e-06	ci right 1.410289e-05	k: 17	n:1930000
TNFRSF10C   1930000 perm   1895 sec   (1019 perm/sec)   p_kst 8.808290e-06   p_cons 1   p_joint 1.606218e-05

Joint ci ratio: 6.929588e-01	ci left: 1.085724e-05	ci right 2.268138e-05	k: 31	n:1940000
Cons ci ratio: 2.020616e-06	ci left: 9.999981e-01	ci right 1	k: 1940000	n:1940000
KS ci ratio: 9.239483e-01	ci left: 5.104712e-06	ci right 1.403019e-05	k: 17	n:1940000
TNFRSF10C   1940000 perm   1913 sec   (1014 perm/sec)   p_kst 8.762887e-06   p_cons 1   p_joint 1.597938e-05

Joint ci ratio: 6.823785e-01	ci left: 1.122463e-05	ci right 2.316631e-05	k: 32	n:1950000
Cons ci ratio: 2.010254e-06	ci left: 9.999981e-01	ci right 1	k: 1950000	n:1950000
KS ci ratio: 9.239484e-01	ci left: 5.078534e-06	ci right 1.395824e-05	k: 17	n:1950000
TNFRSF10C   1950000 perm   1931 sec   (1010 perm/sec)   p_kst 8.717949e-06   p_cons 1   p_joint 1.641026e-05

Joint ci ratio: 6.722685e-01	ci left: 1.158966e-05	ci right 2.364495e-05	k: 33	n:1960000
Cons ci ratio: 1.999998e-06	ci left: 9.999981e-01	ci right 1	k: 1960000	n:1960000
KS ci ratio: 9.239484e-01	ci left: 5.052623e-06	ci right 1.388703e-05	k: 17	n:1960000
TNFRSF10C   1960000 perm   1950 sec   (1005 perm/sec)   p_kst 8.673469e-06   p_cons 1   p_joint 1.683673e-05

Joint ci ratio: 6.722685e-01	ci left: 1.153083e-05	ci right 2.352493e-05	k: 33	n:1970000
Cons ci ratio: 1.989846e-06	ci left: 9.999981e-01	ci right 1	k: 1970000	n:1970000
KS ci ratio: 9.239484e-01	ci left: 5.026976e-06	ci right 1.381654e-05	k: 17	n:1970000
TNFRSF10C   1970000 perm   1968 sec   (1001 perm/sec)   p_kst 8.629442e-06   p_cons 1   p_joint 1.675127e-05

Joint ci ratio: 6.722685e-01	ci left: 1.147259e-05	ci right 2.340612e-05	k: 33	n:1980000
Cons ci ratio: 1.979796e-06	ci left: 9.999981e-01	ci right 1	k: 1980000	n:1980000
KS ci ratio: 9.239484e-01	ci left: 5.001587e-06	ci right 1.374676e-05	k: 17	n:1980000
TNFRSF10C   1980000 perm   1987 sec   (997 perm/sec)   p_kst 8.585859e-06   p_cons 1   p_joint 1.666667e-05

Joint ci ratio: 6.722685e-01	ci left: 1.141494e-05	ci right 2.328850e-05	k: 33	n:1990000
Cons ci ratio: 1.969847e-06	ci left: 9.999981e-01	ci right 1	k: 1990000	n:1990000
KS ci ratio: 9.239484e-01	ci left: 4.976453e-06	ci right 1.367768e-05	k: 17	n:1990000
TNFRSF10C   1990000 perm   2005 sec   (993 perm/sec)   p_kst 8.542714e-06   p_cons 1   p_joint 1.658291e-05

Joint ci ratio: 6.722686e-01	ci left: 1.135787e-05	ci right 2.317206e-05	k: 33	n:2000000
Cons ci ratio: 1.959998e-06	ci left: 9.999982e-01	ci right 1	k: 2000000	n:2000000
KS ci ratio: 9.239485e-01	ci left: 4.951571e-06	ci right 1.360929e-05	k: 17	n:2000000
TNFRSF10C   2000000 perm   2023 sec   (989 perm/sec)   p_kst 8.500000e-06   p_cons 1   p_joint 1.650000e-05

Joint ci ratio: 6.722686e-01	ci left: 1.130136e-05	ci right 2.305677e-05	k: 33	n:2010000
Cons ci ratio: 1.950247e-06	ci left: 9.999982e-01	ci right 1	k: 2010000	n:2010000
KS ci ratio: 9.239485e-01	ci left: 4.926936e-06	ci right 1.354158e-05	k: 17	n:2010000
TNFRSF10C   2010000 perm   2042 sec   (985 perm/sec)   p_kst 8.457711e-06   p_cons 1   p_joint 1.641791e-05

Joint ci ratio: 6.722686e-01	ci left: 1.124541e-05	ci right 2.294263e-05	k: 33	n:2020000
Cons ci ratio: 1.940592e-06	ci left: 9.999982e-01	ci right 1	k: 2020000	n:2020000
KS ci ratio: 9.239485e-01	ci left: 4.902545e-06	ci right 1.347454e-05	k: 17	n:2020000
TNFRSF10C   2020000 perm   2060 sec   (981 perm/sec)   p_kst 8.415842e-06   p_cons 1   p_joint 1.633663e-05

Joint ci ratio: 6.722687e-01	ci left: 1.119002e-05	ci right 2.282961e-05	k: 33	n:2030000
Cons ci ratio: 1.931033e-06	ci left: 9.999982e-01	ci right 1	k: 2030000	n:2030000
KS ci ratio: 9.239485e-01	ci left: 4.878395e-06	ci right 1.340817e-05	k: 17	n:2030000
TNFRSF10C   2030000 perm   2078 sec   (977 perm/sec)   p_kst 8.374384e-06   p_cons 1   p_joint 1.625616e-05

Joint ci ratio: 6.722687e-01	ci left: 1.113516e-05	ci right 2.271770e-05	k: 33	n:2040000
Cons ci ratio: 1.921567e-06	ci left: 9.999982e-01	ci right 1	k: 2040000	n:2040000
KS ci ratio: 9.239486e-01	ci left: 4.854481e-06	ci right 1.334244e-05	k: 17	n:2040000
TNFRSF10C   2040000 perm   2097 sec   (973 perm/sec)   p_kst 8.333333e-06   p_cons 1   p_joint 1.617647e-05

Joint ci ratio: 6.722687e-01	ci left: 1.108085e-05	ci right 2.260689e-05	k: 33	n:2050000
Cons ci ratio: 1.912193e-06	ci left: 9.999982e-01	ci right 1	k: 2050000	n:2050000
KS ci ratio: 9.239486e-01	ci left: 4.830801e-06	ci right 1.327736e-05	k: 17	n:2050000
TNFRSF10C   2050000 perm   2116 sec   (969 perm/sec)   p_kst 8.292683e-06   p_cons 1   p_joint 1.609756e-05

Joint ci ratio: 6.625951e-01	ci left: 1.143012e-05	ci right 2.306380e-05	k: 34	n:2060000
Cons ci ratio: 1.902911e-06	ci left: 9.999982e-01	ci right 1	k: 2060000	n:2060000
KS ci ratio: 8.993053e-01	ci left: 5.178620e-06	ci right 1.380956e-05	k: 18	n:2060000
TNFRSF10C   2060000 perm   2135 sec   (965 perm/sec)   p_kst 8.737864e-06   p_cons 1   p_joint 1.650485e-05

Joint ci ratio: 6.625952e-01	ci left: 1.137490e-05	ci right 2.295239e-05	k: 34	n:2070000
Cons ci ratio: 1.893718e-06	ci left: 9.999982e-01	ci right 1	k: 2070000	n:2070000
KS ci ratio: 8.993053e-01	ci left: 5.153602e-06	ci right 1.374284e-05	k: 18	n:2070000
TNFRSF10C   2070000 perm   2155 sec   (961 perm/sec)   p_kst 8.695652e-06   p_cons 1   p_joint 1.642512e-05

Joint ci ratio: 6.625952e-01	ci left: 1.132021e-05	ci right 2.284204e-05	k: 34	n:2080000
Cons ci ratio: 1.884614e-06	ci left: 9.999982e-01	ci right 1	k: 2080000	n:2080000
KS ci ratio: 8.993054e-01	ci left: 5.128825e-06	ci right 1.367677e-05	k: 18	n:2080000
TNFRSF10C   2080000 perm   2174 sec   (957 perm/sec)   p_kst 8.653846e-06   p_cons 1   p_joint 1.634615e-05

Joint ci ratio: 6.625952e-01	ci left: 1.126605e-05	ci right 2.273275e-05	k: 34	n:2090000
Cons ci ratio: 1.875596e-06	ci left: 9.999982e-01	ci right 1	k: 2090000	n:2090000
KS ci ratio: 8.993054e-01	ci left: 5.104286e-06	ci right 1.361133e-05	k: 18	n:2090000
TNFRSF10C   2090000 perm   2194 sec   (953 perm/sec)   p_kst 8.612440e-06   p_cons 1   p_joint 1.626794e-05

Joint ci ratio: 6.625953e-01	ci left: 1.121240e-05	ci right 2.262449e-05	k: 34	n:2100000
Cons ci ratio: 1.866665e-06	ci left: 9.999982e-01	ci right 1	k: 2100000	n:2100000
KS ci ratio: 8.993054e-01	ci left: 5.079979e-06	ci right 1.354652e-05	k: 18	n:2100000
TNFRSF10C   2100000 perm   2213 sec   (949 perm/sec)   p_kst 8.571429e-06   p_cons 1   p_joint 1.619048e-05

Joint ci ratio: 6.625953e-01	ci left: 1.115926e-05	ci right 2.251727e-05	k: 34	n:2110000
Cons ci ratio: 1.857818e-06	ci left: 9.999983e-01	ci right 1	k: 2110000	n:2110000
KS ci ratio: 8.993054e-01	ci left: 5.055904e-06	ci right 1.348232e-05	k: 18	n:2110000
TNFRSF10C   2110000 perm   2232 sec   (945 perm/sec)   p_kst 8.530806e-06   p_cons 1   p_joint 1.611374e-05

Joint ci ratio: 6.625953e-01	ci left: 1.110662e-05	ci right 2.241106e-05	k: 34	n:2120000
Cons ci ratio: 1.849055e-06	ci left: 9.999983e-01	ci right 1	k: 2120000	n:2120000
KS ci ratio: 8.993054e-01	ci left: 5.032055e-06	ci right 1.341872e-05	k: 18	n:2120000
TNFRSF10C   2120000 perm   2252 sec   (941 perm/sec)   p_kst 8.490566e-06   p_cons 1   p_joint 1.603774e-05

Joint ci ratio: 6.533277e-01	ci left: 1.144546e-05	ci right 2.285276e-05	k: 35	n:2130000
Cons ci ratio: 1.840374e-06	ci left: 9.999983e-01	ci right 1	k: 2130000	n:2130000
KS ci ratio: 8.993055e-01	ci left: 5.008430e-06	ci right 1.335572e-05	k: 18	n:2130000
TNFRSF10C   2130000 perm   2272 sec   (937 perm/sec)   p_kst 8.450704e-06   p_cons 1   p_joint 1.643192e-05

Joint ci ratio: 6.533277e-01	ci left: 1.139198e-05	ci right 2.274597e-05	k: 35	n:2140000
Cons ci ratio: 1.831774e-06	ci left: 9.999983e-01	ci right 1	k: 2140000	n:2140000
KS ci ratio: 8.993055e-01	ci left: 4.985026e-06	ci right 1.329331e-05	k: 18	n:2140000
TNFRSF10C   2140000 perm   2292 sec   (934 perm/sec)   p_kst 8.411215e-06   p_cons 1   p_joint 1.635514e-05

Joint ci ratio: 6.533277e-01	ci left: 1.133899e-05	ci right 2.264017e-05	k: 35	n:2150000
Cons ci ratio: 1.823254e-06	ci left: 9.999983e-01	ci right 1	k: 2150000	n:2150000
KS ci ratio: 8.993055e-01	ci left: 4.961840e-06	ci right 1.323148e-05	k: 18	n:2150000
TNFRSF10C   2150000 perm   2312 sec   (930 perm/sec)   p_kst 8.372093e-06   p_cons 1   p_joint 1.627907e-05

Joint ci ratio: 6.533277e-01	ci left: 1.128650e-05	ci right 2.253536e-05	k: 35	n:2160000
Cons ci ratio: 1.814813e-06	ci left: 9.999983e-01	ci right 1	k: 2160000	n:2160000
KS ci ratio: 8.993055e-01	ci left: 4.938869e-06	ci right 1.317023e-05	k: 18	n:2160000
TNFRSF10C   2160000 perm   2332 sec   (926 perm/sec)   p_kst 8.333333e-06   p_cons 1   p_joint 1.620370e-05

Joint ci ratio: 6.533278e-01	ci left: 1.123449e-05	ci right 2.243151e-05	k: 35	n:2170000
Cons ci ratio: 1.806450e-06	ci left: 9.999983e-01	ci right 1	k: 2170000	n:2170000
KS ci ratio: 8.993055e-01	ci left: 4.916109e-06	ci right 1.310954e-05	k: 18	n:2170000
TNFRSF10C   2170000 perm   2352 sec   (923 perm/sec)   p_kst 8.294931e-06   p_cons 1   p_joint 1.612903e-05

Joint ci ratio: 6.533278e-01	ci left: 1.118295e-05	ci right 2.232861e-05	k: 35	n:2180000
Cons ci ratio: 1.798163e-06	ci left: 9.999983e-01	ci right 1	k: 2180000	n:2180000
KS ci ratio: 8.993056e-01	ci left: 4.893558e-06	ci right 1.304940e-05	k: 18	n:2180000
TNFRSF10C   2180000 perm   2372 sec   (919 perm/sec)   p_kst 8.256881e-06   p_cons 1   p_joint 1.605505e-05

Joint ci ratio: 6.533278e-01	ci left: 1.113189e-05	ci right 2.222666e-05	k: 35	n:2190000
Cons ci ratio: 1.789953e-06	ci left: 9.999983e-01	ci right 1	k: 2190000	n:2190000
KS ci ratio: 8.993056e-01	ci left: 4.871213e-06	ci right 1.298981e-05	k: 18	n:2190000
TNFRSF10C   2190000 perm   2393 sec   (915 perm/sec)   p_kst 8.219178e-06   p_cons 1   p_joint 1.598174e-05

Joint ci ratio: 6.533278e-01	ci left: 1.108129e-05	ci right 2.212563e-05	k: 35	n:2200000
Cons ci ratio: 1.781817e-06	ci left: 9.999983e-01	ci right 1	k: 2200000	n:2200000
KS ci ratio: 8.993056e-01	ci left: 4.849071e-06	ci right 1.293077e-05	k: 18	n:2200000
TNFRSF10C   2200000 perm   2413 sec   (912 perm/sec)   p_kst 8.181818e-06   p_cons 1   p_joint 1.590909e-05

Joint ci ratio: 6.533279e-01	ci left: 1.103115e-05	ci right 2.202551e-05	k: 35	n:2210000
Cons ci ratio: 1.773754e-06	ci left: 9.999983e-01	ci right 1	k: 2210000	n:2210000
KS ci ratio: 8.993056e-01	ci left: 4.827129e-06	ci right 1.287226e-05	k: 18	n:2210000
TNFRSF10C   2210000 perm   2433 sec   (908 perm/sec)   p_kst 8.144796e-06   p_cons 1   p_joint 1.583710e-05

Joint ci ratio: 6.444385e-01	ci left: 1.135766e-05	ci right 2.245001e-05	k: 36	n:2220000
Cons ci ratio: 1.765764e-06	ci left: 9.999983e-01	ci right 1	k: 2220000	n:2220000
KS ci ratio: 8.993056e-01	ci left: 4.805386e-06	ci right 1.281428e-05	k: 18	n:2220000
TNFRSF10C   2220000 perm   2454 sec   (905 perm/sec)   p_kst 8.108108e-06   p_cons 1   p_joint 1.621622e-05

Joint ci ratio: 6.444385e-01	ci left: 1.130673e-05	ci right 2.234934e-05	k: 36	n:2230000
Cons ci ratio: 1.757846e-06	ci left: 9.999983e-01	ci right 1	k: 2230000	n:2230000
KS ci ratio: 8.993056e-01	ci left: 4.783837e-06	ci right 1.275681e-05	k: 18	n:2230000
TNFRSF10C   2230000 perm   2474 sec   (901 perm/sec)   p_kst 8.071749e-06   p_cons 1   p_joint 1.614350e-05

Joint ci ratio: 6.444386e-01	ci left: 1.125626e-05	ci right 2.224956e-05	k: 36	n:2240000
Cons ci ratio: 1.749998e-06	ci left: 9.999984e-01	ci right 1	k: 2240000	n:2240000
KS ci ratio: 8.993057e-01	ci left: 4.762480e-06	ci right 1.269986e-05	k: 18	n:2240000
TNFRSF10C   2240000 perm   2494 sec   (898 perm/sec)   p_kst 8.035714e-06   p_cons 1   p_joint 1.607143e-05

Joint ci ratio: 6.444386e-01	ci left: 1.120623e-05	ci right 2.215068e-05	k: 36	n:2250000
Cons ci ratio: 1.742221e-06	ci left: 9.999984e-01	ci right 1	k: 2250000	n:2250000
KS ci ratio: 8.993057e-01	ci left: 4.741314e-06	ci right 1.264342e-05	k: 18	n:2250000
TNFRSF10C   2250000 perm   2515 sec   (895 perm/sec)   p_kst 8.000000e-06   p_cons 1   p_joint 1.600000e-05

Joint ci ratio: 6.444386e-01	ci left: 1.115664e-05	ci right 2.205266e-05	k: 36	n:2260000
Cons ci ratio: 1.734512e-06	ci left: 9.999984e-01	ci right 1	k: 2260000	n:2260000
KS ci ratio: 8.993057e-01	ci left: 4.720334e-06	ci right 1.258748e-05	k: 18	n:2260000
TNFRSF10C   2260000 perm   2536 sec   (891 perm/sec)   p_kst 7.964602e-06   p_cons 1   p_joint 1.592920e-05

Joint ci ratio: 6.444386e-01	ci left: 1.110749e-05	ci right 2.195552e-05	k: 36	n:2270000
Cons ci ratio: 1.726871e-06	ci left: 9.999984e-01	ci right 1	k: 2270000	n:2270000
KS ci ratio: 8.993057e-01	ci left: 4.699540e-06	ci right 1.253202e-05	k: 18	n:2270000
TNFRSF10C   2270000 perm   2556 sec   (888 perm/sec)   p_kst 7.929515e-06   p_cons 1   p_joint 1.585903e-05

Joint ci ratio: 6.359025e-01	ci left: 1.142608e-05	ci right 2.236819e-05	k: 37	n:2280000
Cons ci ratio: 1.719297e-06	ci left: 9.999984e-01	ci right 1	k: 2280000	n:2280000
KS ci ratio: 8.765346e-01	ci left: 5.017218e-06	ci right 1.301350e-05	k: 19	n:2280000
TNFRSF10C   2280000 perm   2577 sec   (885 perm/sec)   p_kst 8.333333e-06   p_cons 1   p_joint 1.622807e-05

Joint ci ratio: 6.359026e-01	ci left: 1.137619e-05	ci right 2.227051e-05	k: 37	n:2290000
Cons ci ratio: 1.711789e-06	ci left: 9.999984e-01	ci right 1	k: 2290000	n:2290000
KS ci ratio: 8.765346e-01	ci left: 4.995309e-06	ci right 1.295667e-05	k: 19	n:2290000
TNFRSF10C   2290000 perm   2598 sec   (882 perm/sec)   p_kst 8.296943e-06   p_cons 1   p_joint 1.615721e-05

Joint ci ratio: 6.359026e-01	ci left: 1.132673e-05	ci right 2.217368e-05	k: 37	n:2300000
Cons ci ratio: 1.704346e-06	ci left: 9.999984e-01	ci right 1	k: 2300000	n:2300000
KS ci ratio: 8.765346e-01	ci left: 4.973590e-06	ci right 1.290034e-05	k: 19	n:2300000
TNFRSF10C   2300000 perm   2619 sec   (878 perm/sec)   p_kst 8.260870e-06   p_cons 1   p_joint 1.608696e-05

Joint ci ratio: 6.359026e-01	ci left: 1.127769e-05	ci right 2.207769e-05	k: 37	n:2310000
Cons ci ratio: 1.696968e-06	ci left: 9.999984e-01	ci right 1	k: 2310000	n:2310000
KS ci ratio: 8.765347e-01	ci left: 4.952059e-06	ci right 1.284450e-05	k: 19	n:2310000
TNFRSF10C   2310000 perm   2640 sec   (875 perm/sec)   p_kst 8.225108e-06   p_cons 1   p_joint 1.601732e-05

Joint ci ratio: 6.359026e-01	ci left: 1.122908e-05	ci right 2.198253e-05	k: 37	n:2320000
Cons ci ratio: 1.689654e-06	ci left: 9.999984e-01	ci right 1	k: 2320000	n:2320000
KS ci ratio: 8.765347e-01	ci left: 4.930714e-06	ci right 1.278913e-05	k: 19	n:2320000
TNFRSF10C   2320000 perm   2666 sec   (870 perm/sec)   p_kst 8.189655e-06   p_cons 1   p_joint 1.594828e-05

Joint ci ratio: 6.533281e-01	ci left: 1.046302e-05	ci right 2.089115e-05	k: 35	n:2330000
Cons ci ratio: 1.682402e-06	ci left: 9.999984e-01	ci right 1	k: 2330000	n:2330000
KS ci ratio: 8.765347e-01	ci left: 4.909552e-06	ci right 1.273424e-05	k: 19	n:2330000
TNFRSF10C   2330000 perm   2689 sec   (866 perm/sec)   p_kst 8.154506e-06   p_cons 1   p_joint 1.502146e-05

Joint ci ratio: 6.533282e-01	ci left: 1.041830e-05	ci right 2.080187e-05	k: 35	n:2340000
Cons ci ratio: 1.675212e-06	ci left: 9.999984e-01	ci right 1	k: 2340000	n:2340000
KS ci ratio: 8.765347e-01	ci left: 4.888571e-06	ci right 1.267982e-05	k: 19	n:2340000
TNFRSF10C   2340000 perm   2710 sec   (863 perm/sec)   p_kst 8.119658e-06   p_cons 1   p_joint 1.495726e-05

Joint ci ratio: 6.533282e-01	ci left: 1.037397e-05	ci right 2.071336e-05	k: 35	n:2350000
Cons ci ratio: 1.668084e-06	ci left: 9.999984e-01	ci right 1	k: 2350000	n:2350000
KS ci ratio: 8.765347e-01	ci left: 4.867769e-06	ci right 1.262587e-05	k: 19	n:2350000
TNFRSF10C   2350000 perm   2732 sec   (860 perm/sec)   p_kst 8.085106e-06   p_cons 1   p_joint 1.489362e-05

Joint ci ratio: 6.533282e-01	ci left: 1.033001e-05	ci right 2.062559e-05	k: 35	n:2360000
Cons ci ratio: 1.661016e-06	ci left: 9.999984e-01	ci right 1	k: 2360000	n:2360000
KS ci ratio: 8.765347e-01	ci left: 4.847143e-06	ci right 1.257237e-05	k: 19	n:2360000
TNFRSF10C   2360000 perm   2753 sec   (857 perm/sec)   p_kst 8.050847e-06   p_cons 1   p_joint 1.483051e-05

Joint ci ratio: 6.533282e-01	ci left: 1.028643e-05	ci right 2.053856e-05	k: 35	n:2370000
Cons ci ratio: 1.654007e-06	ci left: 9.999984e-01	ci right 1	k: 2370000	n:2370000
KS ci ratio: 8.765348e-01	ci left: 4.826691e-06	ci right 1.251932e-05	k: 19	n:2370000
TNFRSF10C   2370000 perm   2774 sec   (854 perm/sec)   p_kst 8.016878e-06   p_cons 1   p_joint 1.476793e-05

Joint ci ratio: 6.533283e-01	ci left: 1.024321e-05	ci right 2.045226e-05	k: 35	n:2380000
Cons ci ratio: 1.647057e-06	ci left: 9.999985e-01	ci right 1	k: 2380000	n:2380000
KS ci ratio: 8.765348e-01	ci left: 4.806410e-06	ci right 1.246672e-05	k: 19	n:2380000
TNFRSF10C   2380000 perm   2796 sec   (851 perm/sec)   p_kst 7.983193e-06   p_cons 1   p_joint 1.470588e-05

Joint ci ratio: 6.533283e-01	ci left: 1.020035e-05	ci right 2.036669e-05	k: 35	n:2390000
Cons ci ratio: 1.640166e-06	ci left: 9.999985e-01	ci right 1	k: 2390000	n:2390000
KS ci ratio: 8.765348e-01	ci left: 4.786300e-06	ci right 1.241456e-05	k: 19	n:2390000
TNFRSF10C   2390000 perm   2818 sec   (848 perm/sec)   p_kst 7.949791e-06   p_cons 1   p_joint 1.464435e-05

Joint ci ratio: 6.533283e-01	ci left: 1.015785e-05	ci right 2.028183e-05	k: 35	n:2400000
Cons ci ratio: 1.633332e-06	ci left: 9.999985e-01	ci right 1	k: 2400000	n:2400000
KS ci ratio: 8.765348e-01	ci left: 4.766357e-06	ci right 1.236283e-05	k: 19	n:2400000
TNFRSF10C   2400000 perm   2839 sec   (845 perm/sec)   p_kst 7.916667e-06   p_cons 1   p_joint 1.458333e-05

Joint ci ratio: 6.533283e-01	ci left: 1.011570e-05	ci right 2.019767e-05	k: 35	n:2410000
Cons ci ratio: 1.626555e-06	ci left: 9.999985e-01	ci right 1	k: 2410000	n:2410000
KS ci ratio: 8.765348e-01	ci left: 4.746580e-06	ci right 1.231153e-05	k: 19	n:2410000
TNFRSF10C   2410000 perm   2861 sec   (842 perm/sec)   p_kst 7.883817e-06   p_cons 1   p_joint 1.452282e-05

Joint ci ratio: 6.359028e-01	ci left: 1.076507e-05	ci right 2.107416e-05	k: 37	n:2420000
Cons ci ratio: 1.619833e-06	ci left: 9.999985e-01	ci right 1	k: 2420000	n:2420000
KS ci ratio: 8.554102e-01	ci left: 5.048156e-06	ci right 1.276376e-05	k: 20	n:2420000
TNFRSF10C   2420000 perm   2883 sec   (839 perm/sec)   p_kst 8.264463e-06   p_cons 1   p_joint 1.528926e-05

Joint ci ratio: 6.359029e-01	ci left: 1.072077e-05	ci right 2.098744e-05	k: 37	n:2430000
Cons ci ratio: 1.613167e-06	ci left: 9.999985e-01	ci right 1	k: 2430000	n:2430000
KS ci ratio: 8.554103e-01	ci left: 5.027381e-06	ci right 1.271124e-05	k: 20	n:2430000
TNFRSF10C   2430000 perm   2905 sec   (836 perm/sec)   p_kst 8.230453e-06   p_cons 1   p_joint 1.522634e-05

Joint ci ratio: 6.359029e-01	ci left: 1.067683e-05	ci right 2.090143e-05	k: 37	n:2440000
Cons ci ratio: 1.606556e-06	ci left: 9.999985e-01	ci right 1	k: 2440000	n:2440000
KS ci ratio: 8.554103e-01	ci left: 5.006777e-06	ci right 1.265914e-05	k: 20	n:2440000
TNFRSF10C   2440000 perm   2927 sec   (834 perm/sec)   p_kst 8.196721e-06   p_cons 1   p_joint 1.516393e-05

Joint ci ratio: 6.276972e-01	ci left: 1.097597e-05	ci right 2.128891e-05	k: 38	n:2450000
Cons ci ratio: 1.599999e-06	ci left: 9.999985e-01	ci right 1	k: 2450000	n:2450000
KS ci ratio: 8.554103e-01	ci left: 4.986341e-06	ci right 1.260747e-05	k: 20	n:2450000
TNFRSF10C   2450000 perm   2950 sec   (831 perm/sec)   p_kst 8.163265e-06   p_cons 1   p_joint 1.551020e-05

Joint ci ratio: 6.276973e-01	ci left: 1.093135e-05	ci right 2.120237e-05	k: 38	n:2460000
Cons ci ratio: 1.593495e-06	ci left: 9.999985e-01	ci right 1	k: 2460000	n:2460000
KS ci ratio: 8.554103e-01	ci left: 4.966072e-06	ci right 1.255622e-05	k: 20	n:2460000
TNFRSF10C   2460000 perm   2972 sec   (828 perm/sec)   p_kst 8.130081e-06   p_cons 1   p_joint 1.544715e-05

Joint ci ratio: 6.276973e-01	ci left: 1.088709e-05	ci right 2.111653e-05	k: 38	n:2470000
Cons ci ratio: 1.587043e-06	ci left: 9.999985e-01	ci right 1	k: 2470000	n:2470000
KS ci ratio: 8.554103e-01	ci left: 4.945966e-06	ci right 1.250539e-05	k: 20	n:2470000
TNFRSF10C   2470000 perm   2995 sec   (825 perm/sec)   p_kst 8.097166e-06   p_cons 1   p_joint 1.538462e-05

Joint ci ratio: 6.276973e-01	ci left: 1.084319e-05	ci right 2.103138e-05	k: 38	n:2480000
Cons ci ratio: 1.580644e-06	ci left: 9.999985e-01	ci right 1	k: 2480000	n:2480000
KS ci ratio: 8.554103e-01	ci left: 4.926023e-06	ci right 1.245496e-05	k: 20	n:2480000
TNFRSF10C   2480000 perm   3017 sec   (822 perm/sec)   p_kst 8.064516e-06   p_cons 1   p_joint 1.532258e-05

Joint ci ratio: 6.276973e-01	ci left: 1.079965e-05	ci right 2.094692e-05	k: 38	n:2490000
Cons ci ratio: 1.574296e-06	ci left: 9.999985e-01	ci right 1	k: 2490000	n:2490000
KS ci ratio: 8.554104e-01	ci left: 4.906239e-06	ci right 1.240494e-05	k: 20	n:2490000
TNFRSF10C   2490000 perm   3040 sec   (819 perm/sec)   p_kst 8.032129e-06   p_cons 1   p_joint 1.526104e-05

Joint ci ratio: 6.276973e-01	ci left: 1.075645e-05	ci right 2.086313e-05	k: 38	n:2500000
Cons ci ratio: 1.567999e-06	ci left: 9.999985e-01	ci right 1	k: 2500000	n:2500000
KS ci ratio: 8.554104e-01	ci left: 4.886614e-06	ci right 1.235532e-05	k: 20	n:2500000
TNFRSF10C   2500000 perm   3062 sec   (816 perm/sec)   p_kst 8.000000e-06   p_cons 1   p_joint 1.520000e-05

Joint ci ratio: 6.276974e-01	ci left: 1.071359e-05	ci right 2.078001e-05	k: 38	n:2510000
Cons ci ratio: 1.561752e-06	ci left: 9.999985e-01	ci right 1	k: 2510000	n:2510000
KS ci ratio: 8.554104e-01	ci left: 4.867146e-06	ci right 1.230610e-05	k: 20	n:2510000
TNFRSF10C   2510000 perm   3085 sec   (814 perm/sec)   p_kst 7.968127e-06   p_cons 1   p_joint 1.513944e-05

Joint ci ratio: 6.276974e-01	ci left: 1.067108e-05	ci right 2.069755e-05	k: 38	n:2520000
Cons ci ratio: 1.555554e-06	ci left: 9.999985e-01	ci right 1	k: 2520000	n:2520000
KS ci ratio: 8.554104e-01	ci left: 4.847832e-06	ci right 1.225727e-05	k: 20	n:2520000
TNFRSF10C   2520000 perm   3108 sec   (811 perm/sec)   p_kst 7.936508e-06   p_cons 1   p_joint 1.507937e-05

Joint ci ratio: 6.276974e-01	ci left: 1.062890e-05	ci right 2.061574e-05	k: 38	n:2530000
Cons ci ratio: 1.549406e-06	ci left: 9.999985e-01	ci right 1	k: 2530000	n:2530000
KS ci ratio: 8.554104e-01	ci left: 4.828670e-06	ci right 1.220882e-05	k: 20	n:2530000
TNFRSF10C   2530000 perm   3131 sec   (808 perm/sec)   p_kst 7.905138e-06   p_cons 1   p_joint 1.501976e-05

Joint ci ratio: 6.276974e-01	ci left: 1.058705e-05	ci right 2.053458e-05	k: 38	n:2540000
Cons ci ratio: 1.543306e-06	ci left: 9.999985e-01	ci right 1	k: 2540000	n:2540000
KS ci ratio: 8.554104e-01	ci left: 4.809660e-06	ci right 1.216075e-05	k: 20	n:2540000
TNFRSF10C   2540000 perm   3154 sec   (805 perm/sec)   p_kst 7.874016e-06   p_cons 1   p_joint 1.496063e-05

Joint ci ratio: 6.276974e-01	ci left: 1.054554e-05	ci right 2.045405e-05	k: 38	n:2550000
Cons ci ratio: 1.537254e-06	ci left: 9.999986e-01	ci right 1	k: 2550000	n:2550000
KS ci ratio: 8.554104e-01	ci left: 4.790798e-06	ci right 1.211306e-05	k: 20	n:2550000
TNFRSF10C   2550000 perm   3178 sec   (802 perm/sec)   p_kst 7.843137e-06   p_cons 1   p_joint 1.490196e-05

Joint ci ratio: 6.198015e-01	ci left: 1.083315e-05	ci right 2.082583e-05	k: 39	n:2560000
Cons ci ratio: 1.531249e-06	ci left: 9.999986e-01	ci right 1	k: 2560000	n:2560000
KS ci ratio: 8.357431e-01	ci left: 5.077871e-06	ci right 1.253932e-05	k: 21	n:2560000
TNFRSF10C   2560000 perm   3201 sec   (800 perm/sec)   p_kst 8.203125e-06   p_cons 1   p_joint 1.523437e-05

Joint ci ratio: 6.198015e-01	ci left: 1.079100e-05	ci right 2.074480e-05	k: 39	n:2570000
Cons ci ratio: 1.525291e-06	ci left: 9.999986e-01	ci right 1	k: 2570000	n:2570000
KS ci ratio: 8.357431e-01	ci left: 5.058112e-06	ci right 1.249053e-05	k: 21	n:2570000
TNFRSF10C   2570000 perm   3224 sec   (797 perm/sec)   p_kst 8.171206e-06   p_cons 1   p_joint 1.517510e-05

Joint ci ratio: 6.198015e-01	ci left: 1.074917e-05	ci right 2.066439e-05	k: 39	n:2580000
Cons ci ratio: 1.519379e-06	ci left: 9.999986e-01	ci right 1	k: 2580000	n:2580000
KS ci ratio: 8.357431e-01	ci left: 5.038507e-06	ci right 1.244212e-05	k: 21	n:2580000
TNFRSF10C   2580000 perm   3248 sec   (794 perm/sec)   p_kst 8.139535e-06   p_cons 1   p_joint 1.511628e-05

Joint ci ratio: 6.198015e-01	ci left: 1.070767e-05	ci right 2.058461e-05	k: 39	n:2590000
Cons ci ratio: 1.513512e-06	ci left: 9.999986e-01	ci right 1	k: 2590000	n:2590000
KS ci ratio: 8.357431e-01	ci left: 5.019053e-06	ci right 1.239408e-05	k: 21	n:2590000
TNFRSF10C   2590000 perm   3272 sec   (792 perm/sec)   p_kst 8.108108e-06   p_cons 1   p_joint 1.505792e-05

Joint ci ratio: 6.198015e-01	ci left: 1.066649e-05	ci right 2.050544e-05	k: 39	n:2600000
Cons ci ratio: 1.507691e-06	ci left: 9.999986e-01	ci right 1	k: 2600000	n:2600000
KS ci ratio: 8.357431e-01	ci left: 4.999749e-06	ci right 1.234641e-05	k: 21	n:2600000
TNFRSF10C   2600000 perm   3295 sec   (789 perm/sec)   p_kst 8.076923e-06   p_cons 1   p_joint 1.500000e-05

Joint ci ratio: 6.198016e-01	ci left: 1.062562e-05	ci right 2.042687e-05	k: 39	n:2610000
Cons ci ratio: 1.501915e-06	ci left: 9.999986e-01	ci right 1	k: 2610000	n:2610000
KS ci ratio: 8.357431e-01	ci left: 4.980593e-06	ci right 1.229910e-05	k: 21	n:2610000
TNFRSF10C   2610000 perm   3318 sec   (787 perm/sec)   p_kst 8.045977e-06   p_cons 1   p_joint 1.494253e-05

Joint ci ratio: 6.198016e-01	ci left: 1.058506e-05	ci right 2.034891e-05	k: 39	n:2620000
Cons ci ratio: 1.496182e-06	ci left: 9.999986e-01	ci right 1	k: 2620000	n:2620000
KS ci ratio: 8.357431e-01	ci left: 4.961583e-06	ci right 1.225216e-05	k: 21	n:2620000
TNFRSF10C   2620000 perm   3343 sec   (784 perm/sec)   p_kst 8.015267e-06   p_cons 1   p_joint 1.488550e-05

Joint ci ratio: 6.198016e-01	ci left: 1.054482e-05	ci right 2.027154e-05	k: 39	n:2630000
Cons ci ratio: 1.490493e-06	ci left: 9.999986e-01	ci right 1	k: 2630000	n:2630000
KS ci ratio: 8.357432e-01	ci left: 4.942718e-06	ci right 1.220558e-05	k: 21	n:2630000
TNFRSF10C   2630000 perm   3367 sec   (781 perm/sec)   p_kst 7.984791e-06   p_cons 1   p_joint 1.482890e-05

Joint ci ratio: 6.198016e-01	ci left: 1.050487e-05	ci right 2.019475e-05	k: 39	n:2640000
Cons ci ratio: 1.484847e-06	ci left: 9.999986e-01	ci right 1	k: 2640000	n:2640000
KS ci ratio: 8.357432e-01	ci left: 4.923996e-06	ci right 1.215934e-05	k: 21	n:2640000
TNFRSF10C   2640000 perm   3391 sec   (779 perm/sec)   p_kst 7.954545e-06   p_cons 1   p_joint 1.477273e-05

Joint ci ratio: 6.198016e-01	ci left: 1.046523e-05	ci right 2.011854e-05	k: 39	n:2650000
Cons ci ratio: 1.479244e-06	ci left: 9.999986e-01	ci right 1	k: 2650000	n:2650000
KS ci ratio: 8.357432e-01	ci left: 4.905414e-06	ci right 1.211346e-05	k: 21	n:2650000
TNFRSF10C   2650000 perm   3415 sec   (776 perm/sec)   p_kst 7.924528e-06   p_cons 1   p_joint 1.471698e-05

Joint ci ratio: 6.198016e-01	ci left: 1.042589e-05	ci right 2.004291e-05	k: 39	n:2660000
Cons ci ratio: 1.473683e-06	ci left: 9.999986e-01	ci right 1	k: 2660000	n:2660000
KS ci ratio: 8.357432e-01	ci left: 4.886973e-06	ci right 1.206792e-05	k: 21	n:2660000
TNFRSF10C   2660000 perm   3439 sec   (773 perm/sec)   p_kst 7.894737e-06   p_cons 1   p_joint 1.466165e-05

Joint ci ratio: 6.198017e-01	ci left: 1.038684e-05	ci right 1.996784e-05	k: 39	n:2670000
Cons ci ratio: 1.468164e-06	ci left: 9.999986e-01	ci right 1	k: 2670000	n:2670000
KS ci ratio: 8.357432e-01	ci left: 4.868670e-06	ci right 1.202272e-05	k: 21	n:2670000
TNFRSF10C   2670000 perm   3463 sec   (771 perm/sec)   p_kst 7.865169e-06   p_cons 1   p_joint 1.460674e-05

Joint ci ratio: 6.198017e-01	ci left: 1.034808e-05	ci right 1.989334e-05	k: 39	n:2680000
Cons ci ratio: 1.462685e-06	ci left: 9.999986e-01	ci right 1	k: 2680000	n:2680000
KS ci ratio: 8.357432e-01	ci left: 4.850503e-06	ci right 1.197786e-05	k: 21	n:2680000
TNFRSF10C   2680000 perm   3487 sec   (769 perm/sec)   p_kst 7.835821e-06   p_cons 1   p_joint 1.455224e-05

Joint ci ratio: 6.198017e-01	ci left: 1.030962e-05	ci right 1.981938e-05	k: 39	n:2690000
Cons ci ratio: 1.457248e-06	ci left: 9.999986e-01	ci right 1	k: 2690000	n:2690000
KS ci ratio: 8.357432e-01	ci left: 4.832471e-06	ci right 1.193333e-05	k: 21	n:2690000
TNFRSF10C   2690000 perm   3511 sec   (766 perm/sec)   p_kst 7.806691e-06   p_cons 1   p_joint 1.449814e-05

Joint ci ratio: 6.198017e-01	ci left: 1.027143e-05	ci right 1.974598e-05	k: 39	n:2700000
Cons ci ratio: 1.451851e-06	ci left: 9.999986e-01	ci right 1	k: 2700000	n:2700000
KS ci ratio: 8.357432e-01	ci left: 4.814573e-06	ci right 1.188914e-05	k: 21	n:2700000
TNFRSF10C   2700000 perm   3535 sec   (764 perm/sec)   p_kst 7.777778e-06   p_cons 1   p_joint 1.444444e-05

Joint ci ratio: 6.198017e-01	ci left: 1.023353e-05	ci right 1.967312e-05	k: 39	n:2710000
Cons ci ratio: 1.446493e-06	ci left: 9.999986e-01	ci right 1	k: 2710000	n:2710000
KS ci ratio: 8.357433e-01	ci left: 4.796807e-06	ci right 1.184526e-05	k: 21	n:2710000
TNFRSF10C   2710000 perm   3559 sec   (761 perm/sec)   p_kst 7.749077e-06   p_cons 1   p_joint 1.439114e-05

Joint ci ratio: 6.198018e-01	ci left: 1.019591e-05	ci right 1.960079e-05	k: 39	n:2720000
Cons ci ratio: 1.441175e-06	ci left: 9.999986e-01	ci right 1	k: 2720000	n:2720000
KS ci ratio: 8.357433e-01	ci left: 4.779172e-06	ci right 1.180172e-05	k: 21	n:2720000
TNFRSF10C   2720000 perm   3584 sec   (759 perm/sec)   p_kst 7.720588e-06   p_cons 1   p_joint 1.433824e-05

Joint ci ratio: 6.198018e-01	ci left: 1.015856e-05	ci right 1.952899e-05	k: 39	n:2730000
Cons ci ratio: 1.435896e-06	ci left: 9.999986e-01	ci right 1	k: 2730000	n:2730000
KS ci ratio: 8.357433e-01	ci left: 4.761666e-06	ci right 1.175849e-05	k: 21	n:2730000
TNFRSF10C   2730000 perm   3608 sec   (757 perm/sec)   p_kst 7.692308e-06   p_cons 1   p_joint 1.428571e-05

Joint ci ratio: 6.198018e-01	ci left: 1.012148e-05	ci right 1.945772e-05	k: 39	n:2740000
Cons ci ratio: 1.430656e-06	ci left: 9.999987e-01	ci right 1	k: 2740000	n:2740000
KS ci ratio: 8.357433e-01	ci left: 4.744287e-06	ci right 1.171557e-05	k: 21	n:2740000
TNFRSF10C   2740000 perm   3632 sec   (754 perm/sec)   p_kst 7.664234e-06   p_cons 1   p_joint 1.423358e-05

Joint ci ratio: 6.198018e-01	ci left: 1.008468e-05	ci right 1.938696e-05	k: 39	n:2750000
Cons ci ratio: 1.425454e-06	ci left: 9.999987e-01	ci right 1	k: 2750000	n:2750000
KS ci ratio: 8.357433e-01	ci left: 4.727035e-06	ci right 1.167297e-05	k: 21	n:2750000
TNFRSF10C   2750000 perm   3657 sec   (752 perm/sec)   p_kst 7.636364e-06   p_cons 1   p_joint 1.418182e-05

Joint ci ratio: 6.198018e-01	ci left: 1.004814e-05	ci right 1.931672e-05	k: 39	n:2760000
Cons ci ratio: 1.420289e-06	ci left: 9.999987e-01	ci right 1	k: 2760000	n:2760000
KS ci ratio: 8.357433e-01	ci left: 4.709909e-06	ci right 1.163068e-05	k: 21	n:2760000
TNFRSF10C   2760000 perm   3682 sec   (750 perm/sec)   p_kst 7.608696e-06   p_cons 1   p_joint 1.413043e-05

Joint ci ratio: 6.198018e-01	ci left: 1.001186e-05	ci right 1.924698e-05	k: 39	n:2770000
Cons ci ratio: 1.415161e-06	ci left: 9.999987e-01	ci right 1	k: 2770000	n:2770000
KS ci ratio: 8.357433e-01	ci left: 4.692905e-06	ci right 1.158869e-05	k: 21	n:2770000
TNFRSF10C   2770000 perm   3707 sec   (747 perm/sec)   p_kst 7.581227e-06   p_cons 1   p_joint 1.407942e-05

Joint ci ratio: 6.198019e-01	ci left: 9.975850e-06	ci right 1.917775e-05	k: 39	n:2780000
Cons ci ratio: 1.410071e-06	ci left: 9.999987e-01	ci right 1	k: 2780000	n:2780000
KS ci ratio: 8.357434e-01	ci left: 4.676024e-06	ci right 1.154700e-05	k: 21	n:2780000
TNFRSF10C   2780000 perm   3732 sec   (745 perm/sec)   p_kst 7.553957e-06   p_cons 1   p_joint 1.402878e-05

Joint ci ratio: 6.198019e-01	ci left: 9.940094e-06	ci right 1.910901e-05	k: 39	n:2790000
Cons ci ratio: 1.405017e-06	ci left: 9.999987e-01	ci right 1	k: 2790000	n:2790000
KS ci ratio: 8.357434e-01	ci left: 4.659264e-06	ci right 1.150562e-05	k: 21	n:2790000
TNFRSF10C   2790000 perm   3757 sec   (743 perm/sec)   p_kst 7.526882e-06   p_cons 1   p_joint 1.397849e-05

Joint ci ratio: 6.198019e-01	ci left: 9.904594e-06	ci right 1.904077e-05	k: 39	n:2800000
Cons ci ratio: 1.399999e-06	ci left: 9.999987e-01	ci right 1	k: 2800000	n:2800000
KS ci ratio: 8.357434e-01	ci left: 4.642624e-06	ci right 1.146452e-05	k: 21	n:2800000
TNFRSF10C   2800000 perm   3782 sec   (740 perm/sec)   p_kst 7.500000e-06   p_cons 1   p_joint 1.392857e-05

Joint ci ratio: 6.198019e-01	ci left: 9.869346e-06	ci right 1.897301e-05	k: 39	n:2810000
Cons ci ratio: 1.395017e-06	ci left: 9.999987e-01	ci right 1	k: 2810000	n:2810000
KS ci ratio: 8.357434e-01	ci left: 4.626102e-06	ci right 1.142373e-05	k: 21	n:2810000
TNFRSF10C   2810000 perm   3807 sec   (738 perm/sec)   p_kst 7.473310e-06   p_cons 1   p_joint 1.387900e-05

Joint ci ratio: 6.198019e-01	ci left: 9.834349e-06	ci right 1.890573e-05	k: 39	n:2820000
Cons ci ratio: 1.390070e-06	ci left: 9.999987e-01	ci right 1	k: 2820000	n:2820000
KS ci ratio: 8.357434e-01	ci left: 4.609698e-06	ci right 1.138322e-05	k: 21	n:2820000
TNFRSF10C   2820000 perm   3833 sec   (736 perm/sec)   p_kst 7.446809e-06   p_cons 1   p_joint 1.382979e-05

Joint ci ratio: 6.198019e-01	ci left: 9.799598e-06	ci right 1.883892e-05	k: 39	n:2830000
Cons ci ratio: 1.385158e-06	ci left: 9.999987e-01	ci right 1	k: 2830000	n:2830000
KS ci ratio: 8.357434e-01	ci left: 4.593409e-06	ci right 1.134299e-05	k: 21	n:2830000
TNFRSF10C   2830000 perm   3858 sec   (734 perm/sec)   p_kst 7.420495e-06   p_cons 1   p_joint 1.378092e-05

Joint ci ratio: 6.198019e-01	ci left: 9.765092e-06	ci right 1.877259e-05	k: 39	n:2840000
Cons ci ratio: 1.380281e-06	ci left: 9.999987e-01	ci right 1	k: 2840000	n:2840000
KS ci ratio: 8.357434e-01	ci left: 4.577235e-06	ci right 1.130305e-05	k: 21	n:2840000
TNFRSF10C   2840000 perm   3884 sec   (731 perm/sec)   p_kst 7.394366e-06   p_cons 1   p_joint 1.373239e-05

Joint ci ratio: 6.198020e-01	ci left: 9.730829e-06	ci right 1.870672e-05	k: 39	n:2850000
Cons ci ratio: 1.375438e-06	ci left: 9.999987e-01	ci right 1	k: 2850000	n:2850000
KS ci ratio: 8.357434e-01	ci left: 4.561174e-06	ci right 1.126339e-05	k: 21	n:2850000
TNFRSF10C   2850000 perm   3909 sec   (729 perm/sec)   p_kst 7.368421e-06   p_cons 1   p_joint 1.368421e-05

Joint ci ratio: 6.198020e-01	ci left: 9.696805e-06	ci right 1.864131e-05	k: 39	n:2860000
Cons ci ratio: 1.370628e-06	ci left: 9.999987e-01	ci right 1	k: 2860000	n:2860000
KS ci ratio: 8.357434e-01	ci left: 4.545226e-06	ci right 1.122401e-05	k: 21	n:2860000
TNFRSF10C   2860000 perm   3934 sec   (727 perm/sec)   p_kst 7.342657e-06   p_cons 1   p_joint 1.363636e-05

Joint ci ratio: 6.198020e-01	ci left: 9.663018e-06	ci right 1.857636e-05	k: 39	n:2870000
Cons ci ratio: 1.365853e-06	ci left: 9.999987e-01	ci right 1	k: 2870000	n:2870000
KS ci ratio: 8.357435e-01	ci left: 4.529389e-06	ci right 1.118490e-05	k: 21	n:2870000
TNFRSF10C   2870000 perm   3960 sec   (725 perm/sec)   p_kst 7.317073e-06   p_cons 1   p_joint 1.358885e-05

Joint ci ratio: 6.198020e-01	ci left: 9.629466e-06	ci right 1.851186e-05	k: 39	n:2880000
Cons ci ratio: 1.361110e-06	ci left: 9.999987e-01	ci right 1	k: 2880000	n:2880000
KS ci ratio: 8.357435e-01	ci left: 4.513662e-06	ci right 1.114607e-05	k: 21	n:2880000
TNFRSF10C   2880000 perm   3986 sec   (723 perm/sec)   p_kst 7.291667e-06   p_cons 1   p_joint 1.354167e-05

Joint ci ratio: 6.198020e-01	ci left: 9.596146e-06	ci right 1.844780e-05	k: 39	n:2890000
Cons ci ratio: 1.356400e-06	ci left: 9.999987e-01	ci right 1	k: 2890000	n:2890000
KS ci ratio: 8.357435e-01	ci left: 4.498044e-06	ci right 1.110750e-05	k: 21	n:2890000
TNFRSF10C   2890000 perm   4011 sec   (720 perm/sec)   p_kst 7.266436e-06   p_cons 1   p_joint 1.349481e-05

Joint ci ratio: 6.198020e-01	ci left: 9.563056e-06	ci right 1.838419e-05	k: 39	n:2900000
Cons ci ratio: 1.351723e-06	ci left: 9.999987e-01	ci right 1	k: 2900000	n:2900000
KS ci ratio: 8.357435e-01	ci left: 4.482533e-06	ci right 1.106920e-05	k: 21	n:2900000
TNFRSF10C   2900000 perm   4037 sec   (718 perm/sec)   p_kst 7.241379e-06   p_cons 1   p_joint 1.344828e-05

Joint ci ratio: 6.198021e-01	ci left: 9.530193e-06	ci right 1.832101e-05	k: 39	n:2910000
Cons ci ratio: 1.347078e-06	ci left: 9.999987e-01	ci right 1	k: 2910000	n:2910000
KS ci ratio: 8.357435e-01	ci left: 4.467129e-06	ci right 1.103116e-05	k: 21	n:2910000
TNFRSF10C   2910000 perm   4063 sec   (716 perm/sec)   p_kst 7.216495e-06   p_cons 1   p_joint 1.340206e-05

Joint ci ratio: 6.198021e-01	ci left: 9.497555e-06	ci right 1.825827e-05	k: 39	n:2920000
Cons ci ratio: 1.342465e-06	ci left: 9.999987e-01	ci right 1	k: 2920000	n:2920000
KS ci ratio: 8.357435e-01	ci left: 4.451831e-06	ci right 1.099338e-05	k: 21	n:2920000
TNFRSF10C   2920000 perm   4090 sec   (714 perm/sec)   p_kst 7.191781e-06   p_cons 1   p_joint 1.335616e-05

Joint ci ratio: 6.198021e-01	ci left: 9.465140e-06	ci right 1.819596e-05	k: 39	n:2930000
Cons ci ratio: 1.337883e-06	ci left: 9.999987e-01	ci right 1	k: 2930000	n:2930000
KS ci ratio: 8.357435e-01	ci left: 4.436637e-06	ci right 1.095586e-05	k: 21	n:2930000
TNFRSF10C   2930000 perm   4116 sec   (712 perm/sec)   p_kst 7.167235e-06   p_cons 1   p_joint 1.331058e-05

Joint ci ratio: 6.198021e-01	ci left: 9.432946e-06	ci right 1.813407e-05	k: 39	n:2940000
Cons ci ratio: 1.333332e-06	ci left: 9.999987e-01	ci right 1	k: 2940000	n:2940000
KS ci ratio: 8.357435e-01	ci left: 4.421546e-06	ci right 1.091860e-05	k: 21	n:2940000
TNFRSF10C   2940000 perm   4142 sec   (710 perm/sec)   p_kst 7.142857e-06   p_cons 1   p_joint 1.326531e-05

Joint ci ratio: 6.198021e-01	ci left: 9.400970e-06	ci right 1.807259e-05	k: 39	n:2950000
Cons ci ratio: 1.328813e-06	ci left: 9.999987e-01	ci right 1	k: 2950000	n:2950000
KS ci ratio: 8.357436e-01	ci left: 4.406558e-06	ci right 1.088158e-05	k: 21	n:2950000
TNFRSF10C   2950000 perm   4169 sec   (708 perm/sec)   p_kst 7.118644e-06   p_cons 1   p_joint 1.322034e-05

Joint ci ratio: 6.198021e-01	ci left: 9.369210e-06	ci right 1.801154e-05	k: 39	n:2960000
Cons ci ratio: 1.324323e-06	ci left: 9.999988e-01	ci right 1	k: 2960000	n:2960000
KS ci ratio: 8.357436e-01	ci left: 4.391671e-06	ci right 1.084482e-05	k: 21	n:2960000
TNFRSF10C   2960000 perm   4195 sec   (706 perm/sec)   p_kst 7.094595e-06   p_cons 1   p_joint 1.317568e-05

Joint ci ratio: 6.198021e-01	ci left: 9.337663e-06	ci right 1.795089e-05	k: 39	n:2970000
Cons ci ratio: 1.319864e-06	ci left: 9.999988e-01	ci right 1	k: 2970000	n:2970000
KS ci ratio: 8.357436e-01	ci left: 4.376884e-06	ci right 1.080831e-05	k: 21	n:2970000
TNFRSF10C   2970000 perm   4222 sec   (704 perm/sec)   p_kst 7.070707e-06   p_cons 1   p_joint 1.313131e-05

Joint ci ratio: 6.198022e-01	ci left: 9.306329e-06	ci right 1.789066e-05	k: 39	n:2980000
Cons ci ratio: 1.315435e-06	ci left: 9.999988e-01	ci right 1	k: 2980000	n:2980000
KS ci ratio: 8.357436e-01	ci left: 4.362197e-06	ci right 1.077204e-05	k: 21	n:2980000
TNFRSF10C   2980000 perm   4249 sec   (701 perm/sec)   p_kst 7.046980e-06   p_cons 1   p_joint 1.308725e-05

Joint ci ratio: 6.198022e-01	ci left: 9.275204e-06	ci right 1.783082e-05	k: 39	n:2990000
Cons ci ratio: 1.311036e-06	ci left: 9.999988e-01	ci right 1	k: 2990000	n:2990000
KS ci ratio: 8.357436e-01	ci left: 4.347607e-06	ci right 1.073601e-05	k: 21	n:2990000
TNFRSF10C   2990000 perm   4275 sec   (699 perm/sec)   p_kst 7.023411e-06   p_cons 1   p_joint 1.304348e-05

Joint ci ratio: 6.198022e-01	ci left: 9.244287e-06	ci right 1.777139e-05	k: 39	n:3000000
Cons ci ratio: 1.306666e-06	ci left: 9.999988e-01	ci right 1	k: 3000000	n:3000000
KS ci ratio: 8.357436e-01	ci left: 4.333115e-06	ci right 1.070022e-05	k: 21	n:3000000
TNFRSF10C   3000000 perm   4302 sec   (697 perm/sec)   p_kst 7.000000e-06   p_cons 1   p_joint 1.300000e-05

Joint ci ratio: 6.198022e-01	ci left: 9.213575e-06	ci right 1.771234e-05	k: 39	n:3010000
Cons ci ratio: 1.302325e-06	ci left: 9.999988e-01	ci right 1	k: 3010000	n:3010000
KS ci ratio: 8.357436e-01	ci left: 4.318720e-06	ci right 1.066467e-05	k: 21	n:3010000
TNFRSF10C   3010000 perm   4329 sec   (695 perm/sec)   p_kst 6.976744e-06   p_cons 1   p_joint 1.295681e-05

Joint ci ratio: 6.198022e-01	ci left: 9.183066e-06	ci right 1.765369e-05	k: 39	n:3020000
Cons ci ratio: 1.298012e-06	ci left: 9.999988e-01	ci right 1	k: 3020000	n:3020000
KS ci ratio: 8.357436e-01	ci left: 4.304419e-06	ci right 1.062936e-05	k: 21	n:3020000
TNFRSF10C   3020000 perm   4356 sec   (693 perm/sec)   p_kst 6.953642e-06   p_cons 1   p_joint 1.291391e-05

Joint ci ratio: 6.198022e-01	ci left: 9.152759e-06	ci right 1.759543e-05	k: 39	n:3030000
Cons ci ratio: 1.293729e-06	ci left: 9.999988e-01	ci right 1	k: 3030000	n:3030000
KS ci ratio: 8.357436e-01	ci left: 4.290213e-06	ci right 1.059428e-05	k: 21	n:3030000
TNFRSF10C   3030000 perm   4383 sec   (691 perm/sec)   p_kst 6.930693e-06   p_cons 1   p_joint 1.287129e-05

Joint ci ratio: 6.198022e-01	ci left: 9.122651e-06	ci right 1.753755e-05	k: 39	n:3040000
Cons ci ratio: 1.289473e-06	ci left: 9.999988e-01	ci right 1	k: 3040000	n:3040000
KS ci ratio: 8.357436e-01	ci left: 4.276101e-06	ci right 1.055943e-05	k: 21	n:3040000
TNFRSF10C   3040000 perm   4410 sec   (689 perm/sec)   p_kst 6.907895e-06   p_cons 1   p_joint 1.282895e-05

Joint ci ratio: 6.121969e-01	ci left: 9.369389e-06	ci right 1.785853e-05	k: 40	n:3050000
Cons ci ratio: 1.285245e-06	ci left: 9.999988e-01	ci right 1	k: 3050000	n:3050000
KS ci ratio: 8.357437e-01	ci left: 4.262081e-06	ci right 1.052481e-05	k: 21	n:3050000
TNFRSF10C   3050000 perm   4438 sec   (687 perm/sec)   p_kst 6.885246e-06   p_cons 1   p_joint 1.311475e-05

Joint ci ratio: 6.121969e-01	ci left: 9.338770e-06	ci right 1.780017e-05	k: 40	n:3060000
Cons ci ratio: 1.281045e-06	ci left: 9.999988e-01	ci right 1	k: 3060000	n:3060000
KS ci ratio: 8.357437e-01	ci left: 4.248152e-06	ci right 1.049042e-05	k: 21	n:3060000
TNFRSF10C   3060000 perm   4465 sec   (685 perm/sec)   p_kst 6.862745e-06   p_cons 1   p_joint 1.307190e-05

Joint ci ratio: 6.121970e-01	ci left: 9.308350e-06	ci right 1.774219e-05	k: 40	n:3070000
Cons ci ratio: 1.276872e-06	ci left: 9.999988e-01	ci right 1	k: 3070000	n:3070000
KS ci ratio: 8.357437e-01	ci left: 4.234315e-06	ci right 1.045625e-05	k: 21	n:3070000
TNFRSF10C   3070000 perm   4493 sec   (683 perm/sec)   p_kst 6.840391e-06   p_cons 1   p_joint 1.302932e-05

Joint ci ratio: 6.121970e-01	ci left: 9.278128e-06	ci right 1.768458e-05	k: 40	n:3080000
Cons ci ratio: 1.272726e-06	ci left: 9.999988e-01	ci right 1	k: 3080000	n:3080000
KS ci ratio: 8.357437e-01	ci left: 4.220567e-06	ci right 1.042230e-05	k: 21	n:3080000
TNFRSF10C   3080000 perm   4520 sec   (681 perm/sec)   p_kst 6.818182e-06   p_cons 1   p_joint 1.298701e-05

Joint ci ratio: 6.121970e-01	ci left: 9.248102e-06	ci right 1.762735e-05	k: 40	n:3090000
Cons ci ratio: 1.268608e-06	ci left: 9.999988e-01	ci right 1	k: 3090000	n:3090000
KS ci ratio: 8.357437e-01	ci left: 4.206908e-06	ci right 1.038857e-05	k: 21	n:3090000
TNFRSF10C   3090000 perm   4548 sec   (679 perm/sec)   p_kst 6.796117e-06   p_cons 1   p_joint 1.294498e-05

Joint ci ratio: 6.048649e-01	ci left: 9.491083e-06	ci right 1.794226e-05	k: 41	n:3100000
Cons ci ratio: 1.264515e-06	ci left: 9.999988e-01	ci right 1	k: 3100000	n:3100000
KS ci ratio: 8.173733e-01	ci left: 4.447516e-06	ci right 1.074458e-05	k: 22	n:3100000
TNFRSF10C   3100000 perm   4576 sec   (677 perm/sec)   p_kst 7.096774e-06   p_cons 1   p_joint 1.322581e-05

Joint ci ratio: 2.636783e-01	ci left: 6.170042e-05	ci right 8.073022e-05	k: 220	n:3110000
Cons ci ratio: 1.260449e-06	ci left: 9.999988e-01	ci right 1	k: 3110000	n:3110000
KS ci ratio: 9.239500e-01	ci left: 3.184288e-06	ci right 8.751962e-06	k: 17	n:3110000
TNFRSF10C   3110000 perm   4604 sec   (675 perm/sec)   p_kst 5.466238e-06   p_cons 1   p_joint 7.073955e-05

Joint ci ratio: 2.636784e-01	ci left: 6.150266e-05	ci right 8.047147e-05	k: 220	n:3120000
Cons ci ratio: 1.256409e-06	ci left: 9.999988e-01	ci right 1	k: 3120000	n:3120000
KS ci ratio: 9.239500e-01	ci left: 3.174082e-06	ci right 8.723911e-06	k: 17	n:3120000
TNFRSF10C   3120000 perm   4632 sec   (674 perm/sec)   p_kst 5.448718e-06   p_cons 1   p_joint 7.051282e-05

Joint ci ratio: 2.636784e-01	ci left: 6.130616e-05	ci right 8.021438e-05	k: 220	n:3130000
Cons ci ratio: 1.252395e-06	ci left: 9.999988e-01	ci right 1	k: 3130000	n:3130000
KS ci ratio: 9.239501e-01	ci left: 3.163941e-06	ci right 8.696039e-06	k: 17	n:3130000
TNFRSF10C   3130000 perm   4660 sec   (672 perm/sec)   p_kst 5.431310e-06   p_cons 1   p_joint 7.028754e-05

Joint ci ratio: 2.624933e-01	ci left: 6.170586e-05	ci right 8.063777e-05	k: 222	n:3140000
Cons ci ratio: 1.248407e-06	ci left: 9.999988e-01	ci right 1	k: 3140000	n:3140000
KS ci ratio: 9.239501e-01	ci left: 3.153865e-06	ci right 8.668345e-06	k: 17	n:3140000
TNFRSF10C   3140000 perm   4688 sec   (670 perm/sec)   p_kst 5.414013e-06   p_cons 1   p_joint 7.070064e-05

Joint ci ratio: 2.619067e-01	ci left: 6.180657e-05	ci right 8.072005e-05	k: 223	n:3150000
Cons ci ratio: 1.244444e-06	ci left: 9.999988e-01	ci right 1	k: 3150000	n:3150000
KS ci ratio: 9.239501e-01	ci left: 3.143853e-06	ci right 8.640826e-06	k: 17	n:3150000
TNFRSF10C   3150000 perm   4717 sec   (668 perm/sec)   p_kst 5.396825e-06   p_cons 1   p_joint 7.079365e-05

Joint ci ratio: 2.667131e-01	ci left: 5.924704e-05	ci right 7.776564e-05	k: 215	n:3160000
Cons ci ratio: 1.240506e-06	ci left: 9.999988e-01	ci right 1	k: 3160000	n:3160000
KS ci ratio: 9.239501e-01	ci left: 3.133904e-06	ci right 8.613482e-06	k: 17	n:3160000
TNFRSF10C   3160000 perm   4745 sec   (666 perm/sec)   p_kst 5.379747e-06   p_cons 1   p_joint 6.803797e-05

Joint ci ratio: 2.667131e-01	ci left: 5.906014e-05	ci right 7.752032e-05	k: 215	n:3170000
Cons ci ratio: 1.236592e-06	ci left: 9.999988e-01	ci right 1	k: 3170000	n:3170000
KS ci ratio: 9.239501e-01	ci left: 3.124018e-06	ci right 8.586310e-06	k: 17	n:3170000
TNFRSF10C   3170000 perm   4773 sec   (664 perm/sec)   p_kst 5.362776e-06   p_cons 1   p_joint 6.782334e-05

Joint ci ratio: 2.938082e-01	ci left: 4.776246e-05	ci right 6.449125e-05	k: 177	n:3180000
Cons ci ratio: 1.232704e-06	ci left: 9.999988e-01	ci right 1	k: 3180000	n:3180000
KS ci ratio: 9.239501e-01	ci left: 3.114194e-06	ci right 8.559309e-06	k: 17	n:3180000
TNFRSF10C   3180000 perm   4802 sec   (662 perm/sec)   p_kst 5.345912e-06   p_cons 1   p_joint 5.566038e-05

Joint ci ratio: 2.938082e-01	ci left: 4.761274e-05	ci right 6.428908e-05	k: 177	n:3190000
Cons ci ratio: 1.228839e-06	ci left: 9.999988e-01	ci right 1	k: 3190000	n:3190000
KS ci ratio: 9.239501e-01	ci left: 3.104431e-06	ci right 8.532477e-06	k: 17	n:3190000
TNFRSF10C   3190000 perm   4831 sec   (660 perm/sec)   p_kst 5.329154e-06   p_cons 1   p_joint 5.548589e-05

Joint ci ratio: 2.938082e-01	ci left: 4.746395e-05	ci right 6.408818e-05	k: 177	n:3200000
Cons ci ratio: 1.224999e-06	ci left: 9.999988e-01	ci right 1	k: 3200000	n:3200000
KS ci ratio: 9.239501e-01	ci left: 3.094730e-06	ci right 8.505814e-06	k: 17	n:3200000
TNFRSF10C   3200000 perm   4859 sec   (659 perm/sec)   p_kst 5.312500e-06   p_cons 1   p_joint 5.531250e-05

Joint ci ratio: 2.938082e-01	ci left: 4.731608e-05	ci right 6.388853e-05	k: 177	n:3210000
Cons ci ratio: 1.221183e-06	ci left: 9.999989e-01	ci right 1	k: 3210000	n:3210000
KS ci ratio: 9.239501e-01	ci left: 3.085089e-06	ci right 8.479316e-06	k: 17	n:3210000
TNFRSF10C   3210000 perm   4888 sec   (657 perm/sec)   p_kst 5.295950e-06   p_cons 1   p_joint 5.514019e-05

Joint ci ratio: 2.929864e-01	ci left: 4.745684e-05	ci right 6.402347e-05	k: 178	n:3220000
Cons ci ratio: 1.217391e-06	ci left: 9.999989e-01	ci right 1	k: 3220000	n:3220000
KS ci ratio: 9.239501e-01	ci left: 3.075508e-06	ci right 8.452982e-06	k: 17	n:3220000
TNFRSF10C   3220000 perm   4917 sec   (655 perm/sec)   p_kst 5.279503e-06   p_cons 1   p_joint 5.527950e-05

Joint ci ratio: 2.929864e-01	ci left: 4.730992e-05	ci right 6.382525e-05	k: 178	n:3230000
Cons ci ratio: 1.213622e-06	ci left: 9.999989e-01	ci right 1	k: 3230000	n:3230000
KS ci ratio: 9.239501e-01	ci left: 3.065986e-06	ci right 8.426812e-06	k: 17	n:3230000
TNFRSF10C   3230000 perm   4947 sec   (653 perm/sec)   p_kst 5.263158e-06   p_cons 1   p_joint 5.510836e-05

Joint ci ratio: 2.929864e-01	ci left: 4.716390e-05	ci right 6.362826e-05	k: 178	n:3240000
Cons ci ratio: 1.209876e-06	ci left: 9.999989e-01	ci right 1	k: 3240000	n:3240000
KS ci ratio: 9.239502e-01	ci left: 3.056523e-06	ci right 8.400804e-06	k: 17	n:3240000
TNFRSF10C   3240000 perm   4977 sec   (651 perm/sec)   p_kst 5.246914e-06   p_cons 1   p_joint 5.493827e-05

Joint ci ratio: 2.929864e-01	ci left: 4.701878e-05	ci right 6.343248e-05	k: 178	n:3250000
Cons ci ratio: 1.206153e-06	ci left: 9.999989e-01	ci right 1	k: 3250000	n:3250000
KS ci ratio: 9.239502e-01	ci left: 3.047119e-06	ci right 8.374955e-06	k: 17	n:3250000
TNFRSF10C   3250000 perm   5007 sec   (649 perm/sec)   p_kst 5.230769e-06   p_cons 1   p_joint 5.476923e-05

Joint ci ratio: 2.921714e-01	ci left: 4.715879e-05	ci right 6.356710e-05	k: 179	n:3260000
Cons ci ratio: 1.202453e-06	ci left: 9.999989e-01	ci right 1	k: 3260000	n:3260000
KS ci ratio: 9.239502e-01	ci left: 3.037772e-06	ci right 8.349265e-06	k: 17	n:3260000
TNFRSF10C   3260000 perm   5037 sec   (647 perm/sec)   p_kst 5.214724e-06   p_cons 1   p_joint 5.490798e-05

Joint ci ratio: 2.921715e-01	ci left: 4.701457e-05	ci right 6.337271e-05	k: 179	n:3270000
Cons ci ratio: 1.198776e-06	ci left: 9.999989e-01	ci right 1	k: 3270000	n:3270000
KS ci ratio: 9.239502e-01	ci left: 3.028482e-06	ci right 8.323732e-06	k: 17	n:3270000
TNFRSF10C   3270000 perm   5066 sec   (645 perm/sec)   p_kst 5.198777e-06   p_cons 1   p_joint 5.474006e-05

Joint ci ratio: 2.921715e-01	ci left: 4.687123e-05	ci right 6.317950e-05	k: 179	n:3280000
Cons ci ratio: 1.195121e-06	ci left: 9.999989e-01	ci right 1	k: 3280000	n:3280000
KS ci ratio: 9.239502e-01	ci left: 3.019249e-06	ci right 8.298355e-06	k: 17	n:3280000
TNFRSF10C   3280000 perm   5096 sec   (644 perm/sec)   p_kst 5.182927e-06   p_cons 1   p_joint 5.457317e-05

Joint ci ratio: 2.913632e-01	ci left: 4.701048e-05	ci right 6.331360e-05	k: 180	n:3290000
Cons ci ratio: 1.191489e-06	ci left: 9.999989e-01	ci right 1	k: 3290000	n:3290000
KS ci ratio: 9.239502e-01	ci left: 3.010072e-06	ci right 8.273132e-06	k: 17	n:3290000
TNFRSF10C   3290000 perm   5125 sec   (642 perm/sec)   p_kst 5.167173e-06   p_cons 1   p_joint 5.471125e-05

Joint ci ratio: 2.913633e-01	ci left: 4.686802e-05	ci right 6.312174e-05	k: 180	n:3300000
Cons ci ratio: 1.187878e-06	ci left: 9.999989e-01	ci right 1	k: 3300000	n:3300000
KS ci ratio: 9.239502e-01	ci left: 3.000950e-06	ci right 8.248062e-06	k: 17	n:3300000
TNFRSF10C   3300000 perm   5156 sec   (640 perm/sec)   p_kst 5.151515e-06   p_cons 1   p_joint 5.454545e-05

Joint ci ratio: 2.905617e-01	ci left: 4.700650e-05	ci right 6.325514e-05	k: 181	n:3310000
Cons ci ratio: 1.184289e-06	ci left: 9.999989e-01	ci right 1	k: 3310000	n:3310000
KS ci ratio: 9.239502e-01	ci left: 2.991884e-06	ci right 8.223143e-06	k: 17	n:3310000
TNFRSF10C   3310000 perm   5185 sec   (638 perm/sec)   p_kst 5.135952e-06   p_cons 1   p_joint 5.468278e-05

Joint ci ratio: 2.897667e-01	ci left: 4.714420e-05	ci right 6.338768e-05	k: 182	n:3320000
Cons ci ratio: 1.180722e-06	ci left: 9.999989e-01	ci right 1	k: 3320000	n:3320000
KS ci ratio: 9.239502e-01	ci left: 2.982872e-06	ci right 8.198375e-06	k: 17	n:3320000
TNFRSF10C   3320000 perm   5216 sec   (637 perm/sec)   p_kst 5.120482e-06   p_cons 1   p_joint 5.481928e-05

Joint ci ratio: 2.897667e-01	ci left: 4.700262e-05	ci right 6.319732e-05	k: 182	n:3330000
Cons ci ratio: 1.177176e-06	ci left: 9.999989e-01	ci right 1	k: 3330000	n:3330000
KS ci ratio: 9.239502e-01	ci left: 2.973915e-06	ci right 8.173755e-06	k: 17	n:3330000
TNFRSF10C   3330000 perm   5245 sec   (635 perm/sec)   p_kst 5.105105e-06   p_cons 1   p_joint 5.465465e-05

Joint ci ratio: 3.506088e-01	ci left: 3.087937e-05	ci right 4.426461e-05	k: 124	n:3340000
Cons ci ratio: 1.173652e-06	ci left: 9.999989e-01	ci right 1	k: 3340000	n:3340000
KS ci ratio: 9.239502e-01	ci left: 2.965011e-06	ci right 8.149283e-06	k: 17	n:3340000
TNFRSF10C   3340000 perm   5276 sec   (633 perm/sec)   p_kst 5.089820e-06   p_cons 1   p_joint 3.712575e-05

Joint ci ratio: 3.492147e-01	ci left: 3.105947e-05	ci right 4.445711e-05	k: 125	n:3350000
Cons ci ratio: 1.170149e-06	ci left: 9.999989e-01	ci right 1	k: 3350000	n:3350000
KS ci ratio: 9.239502e-01	ci left: 2.956160e-06	ci right 8.124957e-06	k: 17	n:3350000
TNFRSF10C   3350000 perm   5306 sec   (631 perm/sec)   p_kst 5.074627e-06   p_cons 1   p_joint 3.731343e-05

Joint ci ratio: 3.506089e-01	ci left: 3.069556e-05	ci right 4.400113e-05	k: 124	n:3360000
Cons ci ratio: 1.166666e-06	ci left: 9.999989e-01	ci right 1	k: 3360000	n:3360000
KS ci ratio: 9.239502e-01	ci left: 2.947362e-06	ci right 8.100775e-06	k: 17	n:3360000
TNFRSF10C   3360000 perm   5337 sec   (630 perm/sec)   p_kst 5.059524e-06   p_cons 1   p_joint 3.690476e-05

Joint ci ratio: 3.506089e-01	ci left: 3.060448e-05	ci right 4.387056e-05	k: 124	n:3370000
Cons ci ratio: 1.163204e-06	ci left: 9.999989e-01	ci right 1	k: 3370000	n:3370000
KS ci ratio: 9.239503e-01	ci left: 2.938616e-06	ci right 8.076738e-06	k: 17	n:3370000
TNFRSF10C   3370000 perm   5367 sec   (628 perm/sec)   p_kst 5.044510e-06   p_cons 1   p_joint 3.679525e-05

Joint ci ratio: 3.520199e-01	ci left: 3.024418e-05	ci right 4.341891e-05	k: 123	n:3380000
Cons ci ratio: 1.159763e-06	ci left: 9.999989e-01	ci right 1	k: 3380000	n:3380000
KS ci ratio: 9.239503e-01	ci left: 2.929922e-06	ci right 8.052842e-06	k: 17	n:3380000
TNFRSF10C   3380000 perm   5398 sec   (626 perm/sec)   p_kst 5.029586e-06   p_cons 1   p_joint 3.639053e-05

Joint ci ratio: 3.520199e-01	ci left: 3.015496e-05	ci right 4.329083e-05	k: 123	n:3390000
Cons ci ratio: 1.156342e-06	ci left: 9.999989e-01	ci right 1	k: 3390000	n:3390000
KS ci ratio: 9.239503e-01	ci left: 2.921279e-06	ci right 8.029087e-06	k: 17	n:3390000
TNFRSF10C   3390000 perm   5430 sec   (624 perm/sec)   p_kst 5.014749e-06   p_cons 1   p_joint 3.628319e-05

Joint ci ratio: 3.506090e-01	ci left: 3.033444e-05	ci right 4.348347e-05	k: 124	n:3400000
Cons ci ratio: 1.152940e-06	ci left: 9.999989e-01	ci right 1	k: 3400000	n:3400000
KS ci ratio: 9.239503e-01	ci left: 2.912687e-06	ci right 8.005472e-06	k: 17	n:3400000
TNFRSF10C   3400000 perm   5460 sec   (623 perm/sec)   p_kst 5.000000e-06   p_cons 1   p_joint 3.647059e-05

Joint ci ratio: 3.506090e-01	ci left: 3.024548e-05	ci right 4.335595e-05	k: 124	n:3410000
Cons ci ratio: 1.149559e-06	ci left: 9.999989e-01	ci right 1	k: 3410000	n:3410000
KS ci ratio: 9.239503e-01	ci left: 2.904145e-06	ci right 7.981996e-06	k: 17	n:3410000
TNFRSF10C   3410000 perm   5491 sec   (621 perm/sec)   p_kst 4.985337e-06   p_cons 1   p_joint 3.636364e-05

Joint ci ratio: 3.492149e-01	ci left: 3.042374e-05	ci right 4.354717e-05	k: 125	n:3420000
Cons ci ratio: 1.146198e-06	ci left: 9.999989e-01	ci right 1	k: 3420000	n:3420000
KS ci ratio: 9.239503e-01	ci left: 2.895654e-06	ci right 7.958657e-06	k: 17	n:3420000
TNFRSF10C   3420000 perm   5522 sec   (619 perm/sec)   p_kst 4.970760e-06   p_cons 1   p_joint 3.654971e-05

Joint ci ratio: 3.492149e-01	ci left: 3.033504e-05	ci right 4.342021e-05	k: 125	n:3430000
Cons ci ratio: 1.142856e-06	ci left: 9.999989e-01	ci right 1	k: 3430000	n:3430000
KS ci ratio: 9.239503e-01	ci left: 2.887211e-06	ci right 7.935454e-06	k: 17	n:3430000
TNFRSF10C   3430000 perm   5553 sec   (618 perm/sec)   p_kst 4.956268e-06   p_cons 1   p_joint 3.644315e-05

Joint ci ratio: 3.492149e-01	ci left: 3.024686e-05	ci right 4.329399e-05	k: 125	n:3440000
Cons ci ratio: 1.139534e-06	ci left: 9.999989e-01	ci right 1	k: 3440000	n:3440000
KS ci ratio: 9.239503e-01	ci left: 2.878818e-06	ci right 7.912386e-06	k: 17	n:3440000
TNFRSF10C   3440000 perm   5584 sec   (616 perm/sec)   p_kst 4.941860e-06   p_cons 1   p_joint 3.633721e-05

Joint ci ratio: 3.478373e-01	ci left: 3.042367e-05	ci right 4.348363e-05	k: 126	n:3450000
Cons ci ratio: 1.136231e-06	ci left: 9.999989e-01	ci right 1	k: 3450000	n:3450000
KS ci ratio: 9.239503e-01	ci left: 2.870474e-06	ci right 7.889451e-06	k: 17	n:3450000
TNFRSF10C   3450000 perm   5615 sec   (614 perm/sec)   p_kst 4.927536e-06   p_cons 1   p_joint 3.652174e-05

Joint ci ratio: 3.492149e-01	ci left: 3.007202e-05	ci right 4.304374e-05	k: 125	n:3460000
Cons ci ratio: 1.132947e-06	ci left: 9.999989e-01	ci right 1	k: 3460000	n:3460000
KS ci ratio: 9.239503e-01	ci left: 2.862178e-06	ci right 7.866649e-06	k: 17	n:3460000
TNFRSF10C   3460000 perm   5647 sec   (613 perm/sec)   p_kst 4.913295e-06   p_cons 1   p_joint 3.612717e-05

Joint ci ratio: 3.492150e-01	ci left: 2.998536e-05	ci right 4.291970e-05	k: 125	n:3470000
Cons ci ratio: 1.129682e-06	ci left: 9.999989e-01	ci right 1	k: 3470000	n:3470000
KS ci ratio: 9.239503e-01	ci left: 2.853929e-06	ci right 7.843979e-06	k: 17	n:3470000
TNFRSF10C   3470000 perm   5678 sec   (611 perm/sec)   p_kst 4.899135e-06   p_cons 1   p_joint 3.602305e-05

Joint ci ratio: 3.478374e-01	ci left: 3.016140e-05	ci right 4.310877e-05	k: 126	n:3480000
Cons ci ratio: 1.126436e-06	ci left: 9.999989e-01	ci right 1	k: 3480000	n:3480000
KS ci ratio: 8.993071e-01	ci left: 3.065503e-06	ci right 8.174631e-06	k: 18	n:3480000
TNFRSF10C   3480000 perm   5709 sec   (610 perm/sec)   p_kst 5.172414e-06   p_cons 1   p_joint 3.620690e-05

Joint ci ratio: 3.478374e-01	ci left: 3.007498e-05	ci right 4.298525e-05	k: 126	n:3490000
Cons ci ratio: 1.123209e-06	ci left: 9.999989e-01	ci right 1	k: 3490000	n:3490000
KS ci ratio: 8.993071e-01	ci left: 3.056719e-06	ci right 8.151209e-06	k: 18	n:3490000
TNFRSF10C   3490000 perm   5741 sec   (608 perm/sec)   p_kst 5.157593e-06   p_cons 1   p_joint 3.610315e-05

Joint ci ratio: 3.464759e-01	ci left: 3.024985e-05	ci right 4.317297e-05	k: 127	n:3500000
Cons ci ratio: 1.119999e-06	ci left: 9.999989e-01	ci right 1	k: 3500000	n:3500000
KS ci ratio: 8.765360e-01	ci left: 3.268358e-06	ci right 8.477374e-06	k: 19	n:3500000
TNFRSF10C   3500000 perm   5773 sec   (606 perm/sec)   p_kst 5.428571e-06   p_cons 1   p_joint 3.628571e-05

Joint ci ratio: 3.464760e-01	ci left: 3.016367e-05	ci right 4.304997e-05	k: 127	n:3510000
Cons ci ratio: 1.116808e-06	ci left: 9.999989e-01	ci right 1	k: 3510000	n:3510000
KS ci ratio: 8.765360e-01	ci left: 3.259046e-06	ci right 8.453222e-06	k: 19	n:3510000
TNFRSF10C   3510000 perm   5804 sec   (605 perm/sec)   p_kst 5.413105e-06   p_cons 1   p_joint 3.618234e-05

Joint ci ratio: 3.464760e-01	ci left: 3.007798e-05	ci right 4.292767e-05	k: 127	n:3520000
Cons ci ratio: 1.113636e-06	ci left: 9.999990e-01	ci right 1	k: 3520000	n:3520000
KS ci ratio: 8.765360e-01	ci left: 3.249787e-06	ci right 8.429207e-06	k: 19	n:3520000
TNFRSF10C   3520000 perm   5836 sec   (603 perm/sec)   p_kst 5.397727e-06   p_cons 1   p_joint 3.607955e-05

Joint ci ratio: 3.464760e-01	ci left: 2.999277e-05	ci right 4.280606e-05	k: 127	n:3530000
Cons ci ratio: 1.110481e-06	ci left: 9.999990e-01	ci right 1	k: 3530000	n:3530000
KS ci ratio: 8.765360e-01	ci left: 3.240581e-06	ci right 8.405328e-06	k: 19	n:3530000
TNFRSF10C   3530000 perm   5867 sec   (602 perm/sec)   p_kst 5.382436e-06   p_cons 1   p_joint 3.597734e-05

Joint ci ratio: 3.464760e-01	ci left: 2.990804e-05	ci right 4.268514e-05	k: 127	n:3540000
Cons ci ratio: 1.107344e-06	ci left: 9.999990e-01	ci right 1	k: 3540000	n:3540000
KS ci ratio: 8.765360e-01	ci left: 3.231427e-06	ci right 8.381584e-06	k: 19	n:3540000
TNFRSF10C   3540000 perm   5899 sec   (600 perm/sec)   p_kst 5.367232e-06   p_cons 1   p_joint 3.587571e-05

Joint ci ratio: 3.464760e-01	ci left: 2.982380e-05	ci right 4.256490e-05	k: 127	n:3550000
Cons ci ratio: 1.104225e-06	ci left: 9.999990e-01	ci right 1	k: 3550000	n:3550000
KS ci ratio: 8.765361e-01	ci left: 3.222324e-06	ci right 8.357974e-06	k: 19	n:3550000
TNFRSF10C   3550000 perm   5931 sec   (599 perm/sec)   p_kst 5.352113e-06   p_cons 1   p_joint 3.577465e-05

Joint ci ratio: 3.464760e-01	ci left: 2.974002e-05	ci right 4.244534e-05	k: 127	n:3560000
Cons ci ratio: 1.101123e-06	ci left: 9.999990e-01	ci right 1	k: 3560000	n:3560000
KS ci ratio: 8.765361e-01	ci left: 3.213273e-06	ci right 8.334497e-06	k: 19	n:3560000
TNFRSF10C   3560000 perm   5963 sec   (597 perm/sec)   p_kst 5.337079e-06   p_cons 1   p_joint 3.567416e-05

Joint ci ratio: 3.451305e-01	ci left: 2.991250e-05	ci right 4.263079e-05	k: 128	n:3570000
Cons ci ratio: 1.098039e-06	ci left: 9.999990e-01	ci right 1	k: 3570000	n:3570000
KS ci ratio: 8.765361e-01	ci left: 3.204272e-06	ci right 8.311151e-06	k: 19	n:3570000
TNFRSF10C   3570000 perm   5996 sec   (595 perm/sec)   p_kst 5.322129e-06   p_cons 1   p_joint 3.585434e-05

Joint ci ratio: 3.451305e-01	ci left: 2.982895e-05	ci right 4.251171e-05	k: 128	n:3580000
Cons ci ratio: 1.094971e-06	ci left: 9.999990e-01	ci right 1	k: 3580000	n:3580000
KS ci ratio: 8.765361e-01	ci left: 3.195322e-06	ci right 8.287936e-06	k: 19	n:3580000
TNFRSF10C   3580000 perm   6029 sec   (594 perm/sec)   p_kst 5.307263e-06   p_cons 1   p_joint 3.575419e-05

Joint ci ratio: 3.451305e-01	ci left: 2.974586e-05	ci right 4.239329e-05	k: 128	n:3590000
Cons ci ratio: 1.091921e-06	ci left: 9.999990e-01	ci right 1	k: 3590000	n:3590000
KS ci ratio: 8.765361e-01	ci left: 3.186421e-06	ci right 8.264849e-06	k: 19	n:3590000
TNFRSF10C   3590000 perm   6061 sec   (592 perm/sec)   p_kst 5.292479e-06   p_cons 1   p_joint 3.565460e-05

Joint ci ratio: 3.451305e-01	ci left: 2.966323e-05	ci right 4.227553e-05	k: 128	n:3600000
Cons ci ratio: 1.088888e-06	ci left: 9.999990e-01	ci right 1	k: 3600000	n:3600000
KS ci ratio: 8.765361e-01	ci left: 3.177570e-06	ci right 8.241892e-06	k: 19	n:3600000
TNFRSF10C   3600000 perm   6094 sec   (591 perm/sec)   p_kst 5.277778e-06   p_cons 1   p_joint 3.555556e-05

Joint ci ratio: 3.451305e-01	ci left: 2.958106e-05	ci right 4.215842e-05	k: 128	n:3610000
Cons ci ratio: 1.085872e-06	ci left: 9.999990e-01	ci right 1	k: 3610000	n:3610000
KS ci ratio: 8.765361e-01	ci left: 3.168768e-06	ci right 8.219061e-06	k: 19	n:3610000
TNFRSF10C   3610000 perm   6126 sec   (589 perm/sec)   p_kst 5.263158e-06   p_cons 1   p_joint 3.545706e-05

Joint ci ratio: 3.451306e-01	ci left: 2.949935e-05	ci right 4.204196e-05	k: 128	n:3620000
Cons ci ratio: 1.082872e-06	ci left: 9.999990e-01	ci right 1	k: 3620000	n:3620000
KS ci ratio: 8.765361e-01	ci left: 3.160014e-06	ci right 8.196356e-06	k: 19	n:3620000
TNFRSF10C   3620000 perm   6159 sec   (588 perm/sec)   p_kst 5.248619e-06   p_cons 1   p_joint 3.535912e-05

Joint ci ratio: 3.451306e-01	ci left: 2.941808e-05	ci right 4.192615e-05	k: 128	n:3630000
Cons ci ratio: 1.079889e-06	ci left: 9.999990e-01	ci right 1	k: 3630000	n:3630000
KS ci ratio: 8.765361e-01	ci left: 3.151309e-06	ci right 8.173777e-06	k: 19	n:3630000
TNFRSF10C   3630000 perm   6192 sec   (586 perm/sec)   p_kst 5.234160e-06   p_cons 1   p_joint 3.526171e-05

Joint ci ratio: 3.451306e-01	ci left: 2.933726e-05	ci right 4.181097e-05	k: 128	n:3640000
Cons ci ratio: 1.076922e-06	ci left: 9.999990e-01	ci right 1	k: 3640000	n:3640000
KS ci ratio: 8.765361e-01	ci left: 3.142652e-06	ci right 8.151321e-06	k: 19	n:3640000
TNFRSF10C   3640000 perm   6225 sec   (585 perm/sec)   p_kst 5.219780e-06   p_cons 1   p_joint 3.516484e-05

Joint ci ratio: 3.563577e-01	ci left: 2.725813e-05	ci right 3.931236e-05	k: 120	n:3650000
Cons ci ratio: 1.073972e-06	ci left: 9.999990e-01	ci right 1	k: 3650000	n:3650000
KS ci ratio: 8.765361e-01	ci left: 3.134041e-06	ci right 8.128989e-06	k: 19	n:3650000
TNFRSF10C   3650000 perm   6257 sec   (583 perm/sec)   p_kst 5.205479e-06   p_cons 1   p_joint 3.287671e-05

Joint ci ratio: 3.563577e-01	ci left: 2.718366e-05	ci right 3.920495e-05	k: 120	n:3660000
Cons ci ratio: 1.071038e-06	ci left: 9.999990e-01	ci right 1	k: 3660000	n:3660000
KS ci ratio: 8.765361e-01	ci left: 3.125479e-06	ci right 8.106779e-06	k: 19	n:3660000
TNFRSF10C   3660000 perm   6290 sec   (582 perm/sec)   p_kst 5.191257e-06   p_cons 1   p_joint 3.278689e-05

Joint ci ratio: 3.563577e-01	ci left: 2.710959e-05	ci right 3.909813e-05	k: 120	n:3670000
Cons ci ratio: 1.068119e-06	ci left: 9.999990e-01	ci right 1	k: 3670000	n:3670000
KS ci ratio: 8.765361e-01	ci left: 3.116962e-06	ci right 8.084689e-06	k: 19	n:3670000
TNFRSF10C   3670000 perm   6323 sec   (580 perm/sec)   p_kst 5.177112e-06   p_cons 1   p_joint 3.269755e-05

Joint ci ratio: 3.548942e-01	ci left: 2.728339e-05	ci right 3.928780e-05	k: 121	n:3680000
Cons ci ratio: 1.065217e-06	ci left: 9.999990e-01	ci right 1	k: 3680000	n:3680000
KS ci ratio: 8.765361e-01	ci left: 3.108492e-06	ci right 8.062720e-06	k: 19	n:3680000
TNFRSF10C   3680000 perm   6356 sec   (579 perm/sec)   p_kst 5.163043e-06   p_cons 1   p_joint 3.288043e-05

Joint ci ratio: 3.548942e-01	ci left: 2.720945e-05	ci right 3.918133e-05	k: 121	n:3690000
Cons ci ratio: 1.062330e-06	ci left: 9.999990e-01	ci right 1	k: 3690000	n:3690000
KS ci ratio: 8.765362e-01	ci left: 3.100068e-06	ci right 8.040870e-06	k: 19	n:3690000
TNFRSF10C   3690000 perm   6389 sec   (578 perm/sec)   p_kst 5.149051e-06   p_cons 1   p_joint 3.279133e-05

Joint ci ratio: 3.534486e-01	ci left: 2.738213e-05	ci right 3.936965e-05	k: 122	n:3700000
Cons ci ratio: 1.059459e-06	ci left: 9.999990e-01	ci right 1	k: 3700000	n:3700000
KS ci ratio: 8.765362e-01	ci left: 3.091690e-06	ci right 8.019138e-06	k: 19	n:3700000
TNFRSF10C   3700000 perm   6422 sec   (576 perm/sec)   p_kst 5.135135e-06   p_cons 1   p_joint 3.297297e-05

Joint ci ratio: 3.534486e-01	ci left: 2.730833e-05	ci right 3.926353e-05	k: 122	n:3710000
Cons ci ratio: 1.056603e-06	ci left: 9.999990e-01	ci right 1	k: 3710000	n:3710000
KS ci ratio: 8.765362e-01	ci left: 3.083356e-06	ci right 7.997523e-06	k: 19	n:3710000
TNFRSF10C   3710000 perm   6456 sec   (575 perm/sec)   p_kst 5.121294e-06   p_cons 1   p_joint 3.288410e-05

Joint ci ratio: 3.534486e-01	ci left: 2.723492e-05	ci right 3.915799e-05	k: 122	n:3720000
Cons ci ratio: 1.053763e-06	ci left: 9.999990e-01	ci right 1	k: 3720000	n:3720000
KS ci ratio: 8.765362e-01	ci left: 3.075068e-06	ci right 7.976024e-06	k: 19	n:3720000
TNFRSF10C   3720000 perm   6489 sec   (573 perm/sec)   p_kst 5.107527e-06   p_cons 1   p_joint 3.279570e-05

Joint ci ratio: 3.534486e-01	ci left: 2.716190e-05	ci right 3.905300e-05	k: 122	n:3730000
Cons ci ratio: 1.050938e-06	ci left: 9.999990e-01	ci right 1	k: 3730000	n:3730000
KS ci ratio: 8.765362e-01	ci left: 3.066823e-06	ci right 7.954641e-06	k: 19	n:3730000
TNFRSF10C   3730000 perm   6522 sec   (572 perm/sec)   p_kst 5.093834e-06   p_cons 1   p_joint 3.270777e-05

Joint ci ratio: 3.520205e-01	ci left: 2.733297e-05	ci right 3.923956e-05	k: 123	n:3740000
Cons ci ratio: 1.048128e-06	ci left: 9.999990e-01	ci right 1	k: 3740000	n:3740000
KS ci ratio: 8.765362e-01	ci left: 3.058623e-06	ci right 7.933372e-06	k: 19	n:3740000
TNFRSF10C   3740000 perm   6556 sec   (571 perm/sec)   p_kst 5.080214e-06   p_cons 1   p_joint 3.288770e-05

Joint ci ratio: 3.506096e-01	ci left: 2.750322e-05	ci right 3.942503e-05	k: 124	n:3750000
Cons ci ratio: 1.045333e-06	ci left: 9.999990e-01	ci right 1	k: 3750000	n:3750000
KS ci ratio: 8.765362e-01	ci left: 3.050467e-06	ci right 7.912216e-06	k: 19	n:3750000
TNFRSF10C   3750000 perm   6589 sec   (569 perm/sec)   p_kst 5.066667e-06   p_cons 1   p_joint 3.306667e-05

Joint ci ratio: 3.492155e-01	ci left: 2.767265e-05	ci right 3.960941e-05	k: 125	n:3760000
Cons ci ratio: 1.042553e-06	ci left: 9.999990e-01	ci right 1	k: 3760000	n:3760000
KS ci ratio: 8.765362e-01	ci left: 3.042354e-06	ci right 7.891173e-06	k: 19	n:3760000
TNFRSF10C   3760000 perm   6623 sec   (568 perm/sec)   p_kst 5.053191e-06   p_cons 1   p_joint 3.324468e-05

Joint ci ratio: 3.478378e-01	ci left: 2.784128e-05	ci right 3.979273e-05	k: 126	n:3770000
Cons ci ratio: 1.039787e-06	ci left: 9.999990e-01	ci right 1	k: 3770000	n:3770000
KS ci ratio: 8.554116e-01	ci left: 3.240459e-06	ci right 8.193192e-06	k: 20	n:3770000
TNFRSF10C   3770000 perm   6657 sec   (566 perm/sec)   p_kst 5.305040e-06   p_cons 1   p_joint 3.342175e-05

Joint ci ratio: 3.478379e-01	ci left: 2.776763e-05	ci right 3.968745e-05	k: 126	n:3780000
Cons ci ratio: 1.037036e-06	ci left: 9.999990e-01	ci right 1	k: 3780000	n:3780000
KS ci ratio: 8.554116e-01	ci left: 3.231886e-06	ci right 8.171517e-06	k: 20	n:3780000
TNFRSF10C   3780000 perm   6691 sec   (565 perm/sec)   p_kst 5.291005e-06   p_cons 1   p_joint 3.333333e-05

Joint ci ratio: 3.478379e-01	ci left: 2.769436e-05	ci right 3.958274e-05	k: 126	n:3790000
Cons ci ratio: 1.034300e-06	ci left: 9.999990e-01	ci right 1	k: 3790000	n:3790000
KS ci ratio: 8.554116e-01	ci left: 3.223359e-06	ci right 8.149956e-06	k: 20	n:3790000
TNFRSF10C   3790000 perm   6725 sec   (564 perm/sec)   p_kst 5.277045e-06   p_cons 1   p_joint 3.324538e-05

Joint ci ratio: 3.478379e-01	ci left: 2.762148e-05	ci right 3.947857e-05	k: 126	n:3800000
Cons ci ratio: 1.031578e-06	ci left: 9.999990e-01	ci right 1	k: 3800000	n:3800000
KS ci ratio: 8.554117e-01	ci left: 3.214876e-06	ci right 8.128509e-06	k: 20	n:3800000
TNFRSF10C   3800000 perm   6760 sec   (562 perm/sec)   p_kst 5.263158e-06   p_cons 1   p_joint 3.315789e-05

Joint ci ratio: 3.478379e-01	ci left: 2.754899e-05	ci right 3.937496e-05	k: 126	n:3810000
Cons ci ratio: 1.028871e-06	ci left: 9.999990e-01	ci right 1	k: 3810000	n:3810000
KS ci ratio: 8.554117e-01	ci left: 3.206438e-06	ci right 8.107174e-06	k: 20	n:3810000
TNFRSF10C   3810000 perm   6795 sec   (561 perm/sec)   p_kst 5.249344e-06   p_cons 1   p_joint 3.307087e-05

Joint ci ratio: 3.478379e-01	ci left: 2.747687e-05	ci right 3.927188e-05	k: 126	n:3820000
Cons ci ratio: 1.026177e-06	ci left: 9.999990e-01	ci right 1	k: 3820000	n:3820000
KS ci ratio: 8.554117e-01	ci left: 3.198045e-06	ci right 8.085951e-06	k: 20	n:3820000
TNFRSF10C   3820000 perm   6832 sec   (559 perm/sec)   p_kst 5.235602e-06   p_cons 1   p_joint 3.298429e-05

Joint ci ratio: 3.478379e-01	ci left: 2.740513e-05	ci right 3.916934e-05	k: 126	n:3830000
Cons ci ratio: 1.023498e-06	ci left: 9.999990e-01	ci right 1	k: 3830000	n:3830000
KS ci ratio: 8.554117e-01	ci left: 3.189695e-06	ci right 8.064839e-06	k: 20	n:3830000
TNFRSF10C   3830000 perm   6866 sec   (558 perm/sec)   p_kst 5.221932e-06   p_cons 1   p_joint 3.289817e-05

Joint ci ratio: 3.478380e-01	ci left: 2.733376e-05	ci right 3.906734e-05	k: 126	n:3840000
Cons ci ratio: 1.020833e-06	ci left: 9.999990e-01	ci right 1	k: 3840000	n:3840000
KS ci ratio: 8.554117e-01	ci left: 3.181388e-06	ci right 8.043837e-06	k: 20	n:3840000
TNFRSF10C   3840000 perm   6901 sec   (556 perm/sec)   p_kst 5.208333e-06   p_cons 1   p_joint 3.281250e-05

Joint ci ratio: 3.464765e-01	ci left: 2.749986e-05	ci right 3.924816e-05	k: 127	n:3850000
Cons ci ratio: 1.018181e-06	ci left: 9.999990e-01	ci right 1	k: 3850000	n:3850000
KS ci ratio: 8.554117e-01	ci left: 3.173125e-06	ci right 8.022944e-06	k: 20	n:3850000
TNFRSF10C   3850000 perm   6935 sec   (555 perm/sec)   p_kst 5.194805e-06   p_cons 1   p_joint 3.298701e-05

Joint ci ratio: 3.464765e-01	ci left: 2.742861e-05	ci right 3.914649e-05	k: 127	n:3860000
Cons ci ratio: 1.015544e-06	ci left: 9.999990e-01	ci right 1	k: 3860000	n:3860000
KS ci ratio: 8.554117e-01	ci left: 3.164904e-06	ci right 8.002159e-06	k: 20	n:3860000
TNFRSF10C   3860000 perm   6969 sec   (554 perm/sec)   p_kst 5.181347e-06   p_cons 1   p_joint 3.290155e-05

Joint ci ratio: 3.464765e-01	ci left: 2.735774e-05	ci right 3.904533e-05	k: 127	n:3870000
Cons ci ratio: 1.012919e-06	ci left: 9.999990e-01	ci right 1	k: 3870000	n:3870000
KS ci ratio: 8.554117e-01	ci left: 3.156726e-06	ci right 7.981482e-06	k: 20	n:3870000
TNFRSF10C   3870000 perm   7003 sec   (553 perm/sec)   p_kst 5.167959e-06   p_cons 1   p_joint 3.281654e-05

Joint ci ratio: 3.464766e-01	ci left: 2.728723e-05	ci right 3.894470e-05	k: 127	n:3880000
Cons ci ratio: 1.010309e-06	ci left: 9.999990e-01	ci right 1	k: 3880000	n:3880000
KS ci ratio: 8.554117e-01	ci left: 3.148590e-06	ci right 7.960911e-06	k: 20	n:3880000
TNFRSF10C   3880000 perm   7038 sec   (551 perm/sec)   p_kst 5.154639e-06   p_cons 1   p_joint 3.273196e-05

Joint ci ratio: 3.464766e-01	ci left: 2.721708e-05	ci right 3.884459e-05	k: 127	n:3890000
Cons ci ratio: 1.007712e-06	ci left: 9.999991e-01	ci right 1	k: 3890000	n:3890000
KS ci ratio: 8.554117e-01	ci left: 3.140496e-06	ci right 7.940446e-06	k: 20	n:3890000
TNFRSF10C   3890000 perm   7072 sec   (550 perm/sec)   p_kst 5.141388e-06   p_cons 1   p_joint 3.264781e-05

Joint ci ratio: 3.451310e-01	ci left: 2.738144e-05	ci right 3.902358e-05	k: 128	n:3900000
Cons ci ratio: 1.005128e-06	ci left: 9.999991e-01	ci right 1	k: 3900000	n:3900000
KS ci ratio: 8.554117e-01	ci left: 3.132444e-06	ci right 7.920086e-06	k: 20	n:3900000
TNFRSF10C   3900000 perm   7107 sec   (549 perm/sec)   p_kst 5.128205e-06   p_cons 1   p_joint 3.282051e-05

Joint ci ratio: 3.451310e-01	ci left: 2.731141e-05	ci right 3.892377e-05	k: 128	n:3910000
Cons ci ratio: 1.002557e-06	ci left: 9.999991e-01	ci right 1	k: 3910000	n:3910000
KS ci ratio: 8.554117e-01	ci left: 3.124432e-06	ci right 7.899830e-06	k: 20	n:3910000
TNFRSF10C   3910000 perm   7142 sec   (547 perm/sec)   p_kst 5.115090e-06   p_cons 1   p_joint 3.273657e-05

Joint ci ratio: 3.451310e-01	ci left: 2.724174e-05	ci right 3.882448e-05	k: 128	n:3920000
Cons ci ratio: 9.999995e-07	ci left: 9.999991e-01	ci right 1	k: 3920000	n:3920000
KS ci ratio: 8.554117e-01	ci left: 3.116462e-06	ci right 7.879677e-06	k: 20	n:3920000
TNFRSF10C   3920000 perm   7176 sec   (546 perm/sec)   p_kst 5.102041e-06   p_cons 1   p_joint 3.265306e-05

Joint ci ratio: 3.451310e-01	ci left: 2.717242e-05	ci right 3.872569e-05	k: 128	n:3930000
Cons ci ratio: 9.974550e-07	ci left: 9.999991e-01	ci right 1	k: 3930000	n:3930000
KS ci ratio: 8.554117e-01	ci left: 3.108532e-06	ci right 7.859627e-06	k: 20	n:3930000
TNFRSF10C   3930000 perm   7211 sec   (545 perm/sec)   p_kst 5.089059e-06   p_cons 1   p_joint 3.256997e-05

Joint ci ratio: 3.451311e-01	ci left: 2.710345e-05	ci right 3.862740e-05	k: 128	n:3940000
Cons ci ratio: 9.949234e-07	ci left: 9.999991e-01	ci right 1	k: 3940000	n:3940000
KS ci ratio: 8.554117e-01	ci left: 3.100642e-06	ci right 7.839679e-06	k: 20	n:3940000
TNFRSF10C   3940000 perm   7248 sec   (544 perm/sec)   p_kst 5.076142e-06   p_cons 1   p_joint 3.248731e-05

Joint ci ratio: 3.451311e-01	ci left: 2.703484e-05	ci right 3.852961e-05	k: 128	n:3950000
Cons ci ratio: 9.924046e-07	ci left: 9.999991e-01	ci right 1	k: 3950000	n:3950000
KS ci ratio: 8.554117e-01	ci left: 3.092792e-06	ci right 7.819832e-06	k: 20	n:3950000
TNFRSF10C   3950000 perm   7286 sec   (542 perm/sec)   p_kst 5.063291e-06   p_cons 1   p_joint 3.240506e-05

Joint ci ratio: 3.451311e-01	ci left: 2.696657e-05	ci right 3.843231e-05	k: 128	n:3960000
Cons ci ratio: 9.898985e-07	ci left: 9.999991e-01	ci right 1	k: 3960000	n:3960000
KS ci ratio: 8.554118e-01	ci left: 3.084982e-06	ci right 7.800085e-06	k: 20	n:3960000
TNFRSF10C   3960000 perm   7324 sec   (541 perm/sec)   p_kst 5.050505e-06   p_cons 1   p_joint 3.232323e-05

Joint ci ratio: 3.451311e-01	ci left: 2.689864e-05	ci right 3.833550e-05	k: 128	n:3970000
Cons ci ratio: 9.874050e-07	ci left: 9.999991e-01	ci right 1	k: 3970000	n:3970000
KS ci ratio: 8.554118e-01	ci left: 3.077212e-06	ci right 7.780437e-06	k: 20	n:3970000
TNFRSF10C   3970000 perm   7361 sec   (539 perm/sec)   p_kst 5.037783e-06   p_cons 1   p_joint 3.224181e-05

Joint ci ratio: 3.438011e-01	ci left: 2.706058e-05	ci right 3.851209e-05	k: 129	n:3980000
Cons ci ratio: 9.849241e-07	ci left: 9.999991e-01	ci right 1	k: 3980000	n:3980000
KS ci ratio: 8.554118e-01	ci left: 3.069480e-06	ci right 7.760888e-06	k: 20	n:3980000
TNFRSF10C   3980000 perm   7397 sec   (538 perm/sec)   p_kst 5.025126e-06   p_cons 1   p_joint 3.241206e-05

Joint ci ratio: 3.438011e-01	ci left: 2.699276e-05	ci right 3.841557e-05	k: 129	n:3990000
Cons ci ratio: 9.824556e-07	ci left: 9.999991e-01	ci right 1	k: 3990000	n:3990000
KS ci ratio: 8.554118e-01	ci left: 3.061787e-06	ci right 7.741438e-06	k: 20	n:3990000
TNFRSF10C   3990000 perm   7432 sec   (537 perm/sec)   p_kst 5.012531e-06   p_cons 1   p_joint 3.233083e-05

Joint ci ratio: 3.424863e-01	ci left: 2.715373e-05	ci right 3.859099e-05	k: 130	n:4000000
Cons ci ratio: 9.799995e-07	ci left: 9.999991e-01	ci right 1	k: 4000000	n:4000000
KS ci ratio: 8.554118e-01	ci left: 3.054132e-06	ci right 7.722084e-06	k: 20	n:4000000
TNFRSF10C   4000000 perm   7472 sec   (535 perm/sec)   p_kst 5.000000e-06   p_cons 1   p_joint 3.250000e-05

Joint ci ratio: 3.424864e-01	ci left: 2.708602e-05	ci right 3.849476e-05	k: 130	n:4010000
Cons ci ratio: 9.775556e-07	ci left: 9.999991e-01	ci right 1	k: 4010000	n:4010000
KS ci ratio: 8.554118e-01	ci left: 3.046516e-06	ci right 7.702827e-06	k: 20	n:4010000
TNFRSF10C   4010000 perm   7509 sec   (534 perm/sec)   p_kst 4.987531e-06   p_cons 1   p_joint 3.241895e-05

Joint ci ratio: 3.399014e-01	ci left: 2.747353e-05	ci right 3.893898e-05	k: 132	n:4020000
Cons ci ratio: 9.751239e-07	ci left: 9.999991e-01	ci right 1	k: 4020000	n:4020000
KS ci ratio: 8.554118e-01	ci left: 3.038938e-06	ci right 7.683666e-06	k: 20	n:4020000
TNFRSF10C   4020000 perm   7546 sec   (533 perm/sec)   p_kst 4.975124e-06   p_cons 1   p_joint 3.283582e-05

Joint ci ratio: 3.386308e-01	ci left: 2.763236e-05	ci right 3.911155e-05	k: 133	n:4030000
Cons ci ratio: 9.727042e-07	ci left: 9.999991e-01	ci right 1	k: 4030000	n:4030000
KS ci ratio: 8.554118e-01	ci left: 3.031397e-06	ci right 7.664600e-06	k: 20	n:4030000
TNFRSF10C   4030000 perm   7583 sec   (531 perm/sec)   p_kst 4.962779e-06   p_cons 1   p_joint 3.300248e-05

Joint ci ratio: 3.386308e-01	ci left: 2.756396e-05	ci right 3.901474e-05	k: 133	n:4040000
Cons ci ratio: 9.702965e-07	ci left: 9.999991e-01	ci right 1	k: 4040000	n:4040000
KS ci ratio: 8.554118e-01	ci left: 3.023894e-06	ci right 7.645628e-06	k: 20	n:4040000
TNFRSF10C   4040000 perm   7625 sec   (530 perm/sec)   p_kst 4.950495e-06   p_cons 1   p_joint 3.292079e-05

Joint ci ratio: 3.386308e-01	ci left: 2.749590e-05	ci right 3.891841e-05	k: 133	n:4050000
Cons ci ratio: 9.679008e-07	ci left: 9.999991e-01	ci right 1	k: 4050000	n:4050000
KS ci ratio: 8.554118e-01	ci left: 3.016427e-06	ci right 7.626750e-06	k: 20	n:4050000
TNFRSF10C   4050000 perm   7665 sec   (528 perm/sec)   p_kst 4.938272e-06   p_cons 1   p_joint 3.283951e-05

Joint ci ratio: 3.386308e-01	ci left: 2.742818e-05	ci right 3.882255e-05	k: 133	n:4060000
Cons ci ratio: 9.655168e-07	ci left: 9.999991e-01	ci right 1	k: 4060000	n:4060000
KS ci ratio: 8.554118e-01	ci left: 3.008997e-06	ci right 7.607965e-06	k: 20	n:4060000
TNFRSF10C   4060000 perm   7702 sec   (527 perm/sec)   p_kst 4.926108e-06   p_cons 1   p_joint 3.275862e-05

Joint ci ratio: 3.373742e-01	ci left: 2.758564e-05	ci right 3.899364e-05	k: 134	n:4070000
Cons ci ratio: 9.631445e-07	ci left: 9.999991e-01	ci right 1	k: 4070000	n:4070000
KS ci ratio: 8.554118e-01	ci left: 3.001604e-06	ci right 7.589272e-06	k: 20	n:4070000
TNFRSF10C   4070000 perm   7742 sec   (526 perm/sec)   p_kst 4.914005e-06   p_cons 1   p_joint 3.292383e-05

Joint ci ratio: 3.373743e-01	ci left: 2.751802e-05	ci right 3.889807e-05	k: 134	n:4080000
Cons ci ratio: 9.607838e-07	ci left: 9.999991e-01	ci right 1	k: 4080000	n:4080000
KS ci ratio: 8.554118e-01	ci left: 2.994247e-06	ci right 7.570671e-06	k: 20	n:4080000
TNFRSF10C   4080000 perm   7781 sec   (524 perm/sec)   p_kst 4.901961e-06   p_cons 1   p_joint 3.284314e-05

Joint ci ratio: 3.373743e-01	ci left: 2.745074e-05	ci right 3.880296e-05	k: 134	n:4090000
Cons ci ratio: 9.584347e-07	ci left: 9.999991e-01	ci right 1	k: 4090000	n:4090000
KS ci ratio: 8.554118e-01	ci left: 2.986927e-06	ci right 7.552161e-06	k: 20	n:4090000
TNFRSF10C   4090000 perm   7818 sec   (523 perm/sec)   p_kst 4.889976e-06   p_cons 1   p_joint 3.276284e-05

Joint ci ratio: 3.361316e-01	ci left: 2.760707e-05	ci right 3.897277e-05	k: 135	n:4100000
Cons ci ratio: 9.560971e-07	ci left: 9.999991e-01	ci right 1	k: 4100000	n:4100000
KS ci ratio: 8.554118e-01	ci left: 2.979641e-06	ci right 7.533741e-06	k: 20	n:4100000
TNFRSF10C   4100000 perm   7857 sec   (522 perm/sec)   p_kst 4.878049e-06   p_cons 1   p_joint 3.292683e-05

Joint ci ratio: 3.349026e-01	ci left: 2.776271e-05	ci right 3.914168e-05	k: 136	n:4110000
Cons ci ratio: 9.537708e-07	ci left: 9.999991e-01	ci right 1	k: 4110000	n:4110000
KS ci ratio: 8.554118e-01	ci left: 2.972392e-06	ci right 7.515410e-06	k: 20	n:4110000
TNFRSF10C   4110000 perm   7895 sec   (521 perm/sec)   p_kst 4.866180e-06   p_cons 1   p_joint 3.309002e-05

Joint ci ratio: 3.349026e-01	ci left: 2.769533e-05	ci right 3.904667e-05	k: 136	n:4120000
Cons ci ratio: 9.514558e-07	ci left: 9.999991e-01	ci right 1	k: 4120000	n:4120000
KS ci ratio: 8.554118e-01	ci left: 2.965177e-06	ci right 7.497169e-06	k: 20	n:4120000
TNFRSF10C   4120000 perm   7933 sec   (519 perm/sec)   p_kst 4.854369e-06   p_cons 1   p_joint 3.300971e-05

Joint ci ratio: 3.336869e-01	ci left: 2.785008e-05	ci right 3.921451e-05	k: 137	n:4130000
Cons ci ratio: 9.491521e-07	ci left: 9.999991e-01	ci right 1	k: 4130000	n:4130000
KS ci ratio: 8.554119e-01	ci left: 2.957997e-06	ci right 7.479016e-06	k: 20	n:4130000
TNFRSF10C   4130000 perm   7970 sec   (518 perm/sec)   p_kst 4.842615e-06   p_cons 1   p_joint 3.317191e-05

Joint ci ratio: 3.324844e-01	ci left: 2.800416e-05	ci right 3.938146e-05	k: 138	n:4140000
Cons ci ratio: 9.468594e-07	ci left: 9.999991e-01	ci right 1	k: 4140000	n:4140000
KS ci ratio: 8.554119e-01	ci left: 2.950853e-06	ci right 7.460951e-06	k: 20	n:4140000
TNFRSF10C   4140000 perm   8011 sec   (517 perm/sec)   p_kst 4.830918e-06   p_cons 1   p_joint 3.333333e-05

Joint ci ratio: 3.324845e-01	ci left: 2.793668e-05	ci right 3.928656e-05	k: 138	n:4150000
Cons ci ratio: 9.445779e-07	ci left: 9.999991e-01	ci right 1	k: 4150000	n:4150000
KS ci ratio: 8.554119e-01	ci left: 2.943742e-06	ci right 7.442973e-06	k: 20	n:4150000
TNFRSF10C   4150000 perm   8048 sec   (516 perm/sec)   p_kst 4.819277e-06   p_cons 1   p_joint 3.325301e-05

Joint ci ratio: 3.324845e-01	ci left: 2.786952e-05	ci right 3.919213e-05	k: 138	n:4160000
Cons ci ratio: 9.423072e-07	ci left: 9.999991e-01	ci right 1	k: 4160000	n:4160000
KS ci ratio: 8.554119e-01	ci left: 2.936666e-06	ci right 7.425081e-06	k: 20	n:4160000
TNFRSF10C   4160000 perm   8087 sec   (514 perm/sec)   p_kst 4.807692e-06   p_cons 1   p_joint 3.317308e-05

Joint ci ratio: 3.324845e-01	ci left: 2.780269e-05	ci right 3.909814e-05	k: 138	n:4170000
Cons ci ratio: 9.400475e-07	ci left: 9.999991e-01	ci right 1	k: 4170000	n:4170000
KS ci ratio: 8.554119e-01	ci left: 2.929623e-06	ci right 7.407275e-06	k: 20	n:4170000
TNFRSF10C   4170000 perm   8126 sec   (513 perm/sec)   p_kst 4.796163e-06   p_cons 1   p_joint 3.309353e-05

Joint ci ratio: 3.324845e-01	ci left: 2.773617e-05	ci right 3.900460e-05	k: 138	n:4180000
Cons ci ratio: 9.377986e-07	ci left: 9.999991e-01	ci right 1	k: 4180000	n:4180000
KS ci ratio: 8.554119e-01	ci left: 2.922615e-06	ci right 7.389554e-06	k: 20	n:4180000
TNFRSF10C   4180000 perm   8168 sec   (512 perm/sec)   p_kst 4.784689e-06   p_cons 1   p_joint 3.301435e-05

Joint ci ratio: 3.324845e-01	ci left: 2.766998e-05	ci right 3.891151e-05	k: 138	n:4190000
Cons ci ratio: 9.355604e-07	ci left: 9.999991e-01	ci right 1	k: 4190000	n:4190000
KS ci ratio: 8.554119e-01	ci left: 2.915639e-06	ci right 7.371918e-06	k: 20	n:4190000
TNFRSF10C   4190000 perm   8209 sec   (510 perm/sec)   p_kst 4.773270e-06   p_cons 1   p_joint 3.293556e-05

Joint ci ratio: 3.312949e-01	ci left: 2.782235e-05	ci right 3.907673e-05	k: 139	n:4200000
Cons ci ratio: 9.333329e-07	ci left: 9.999991e-01	ci right 1	k: 4200000	n:4200000
KS ci ratio: 8.554119e-01	ci left: 2.908697e-06	ci right 7.354366e-06	k: 20	n:4200000
TNFRSF10C   4200000 perm   8246 sec   (509 perm/sec)   p_kst 4.761905e-06   p_cons 1   p_joint 3.309524e-05

Joint ci ratio: 3.312949e-01	ci left: 2.775627e-05	ci right 3.898391e-05	k: 139	n:4210000
Cons ci ratio: 9.311159e-07	ci left: 9.999991e-01	ci right 1	k: 4210000	n:4210000
KS ci ratio: 8.554119e-01	ci left: 2.901788e-06	ci right 7.336897e-06	k: 20	n:4210000
TNFRSF10C   4210000 perm   8289 sec   (508 perm/sec)   p_kst 4.750594e-06   p_cons 1   p_joint 3.301663e-05

Joint ci ratio: 3.312949e-01	ci left: 2.769049e-05	ci right 3.889153e-05	k: 139	n:4220000
Cons ci ratio: 9.289095e-07	ci left: 9.999991e-01	ci right 1	k: 4220000	n:4220000
KS ci ratio: 8.554119e-01	ci left: 2.894912e-06	ci right 7.319511e-06	k: 20	n:4220000
TNFRSF10C   4220000 perm   8328 sec   (507 perm/sec)   p_kst 4.739336e-06   p_cons 1   p_joint 3.293839e-05

Joint ci ratio: 3.312949e-01	ci left: 2.762503e-05	ci right 3.879959e-05	k: 139	n:4230000
Cons ci ratio: 9.267135e-07	ci left: 9.999991e-01	ci right 1	k: 4230000	n:4230000
KS ci ratio: 8.554119e-01	ci left: 2.888068e-06	ci right 7.302208e-06	k: 20	n:4230000
TNFRSF10C   4230000 perm   8367 sec   (506 perm/sec)   p_kst 4.728132e-06   p_cons 1   p_joint 3.286052e-05

Joint ci ratio: 3.312950e-01	ci left: 2.755988e-05	ci right 3.870808e-05	k: 139	n:4240000
Cons ci ratio: 9.245279e-07	ci left: 9.999991e-01	ci right 1	k: 4240000	n:4240000
KS ci ratio: 8.554119e-01	ci left: 2.881257e-06	ci right 7.284985e-06	k: 20	n:4240000
TNFRSF10C   4240000 perm   8407 sec   (504 perm/sec)   p_kst 4.716981e-06   p_cons 1   p_joint 3.278302e-05

Joint ci ratio: 3.301180e-01	ci left: 2.771079e-05	ci right 3.887176e-05	k: 140	n:4250000
Cons ci ratio: 9.223525e-07	ci left: 9.999991e-01	ci right 1	k: 4250000	n:4250000
KS ci ratio: 8.554119e-01	ci left: 2.874477e-06	ci right 7.267844e-06	k: 20	n:4250000
TNFRSF10C   4250000 perm   8447 sec   (503 perm/sec)   p_kst 4.705882e-06   p_cons 1   p_joint 3.294118e-05

Joint ci ratio: 3.301181e-01	ci left: 2.764574e-05	ci right 3.878052e-05	k: 140	n:4260000
Cons ci ratio: 9.201874e-07	ci left: 9.999991e-01	ci right 1	k: 4260000	n:4260000
KS ci ratio: 8.554119e-01	ci left: 2.867730e-06	ci right 7.250784e-06	k: 20	n:4260000
TNFRSF10C   4260000 perm   8491 sec   (502 perm/sec)   p_kst 4.694836e-06   p_cons 1   p_joint 3.286385e-05

Joint ci ratio: 3.301181e-01	ci left: 2.758100e-05	ci right 3.868970e-05	k: 140	n:4270000
Cons ci ratio: 9.180324e-07	ci left: 9.999991e-01	ci right 1	k: 4270000	n:4270000
KS ci ratio: 8.554119e-01	ci left: 2.861014e-06	ci right 7.233803e-06	k: 20	n:4270000
TNFRSF10C   4270000 perm   8533 sec   (500 perm/sec)   p_kst 4.683841e-06   p_cons 1   p_joint 3.278689e-05

Joint ci ratio: 3.289536e-01	ci left: 2.773087e-05	ci right 3.885220e-05	k: 141	n:4280000
Cons ci ratio: 9.158874e-07	ci left: 9.999991e-01	ci right 1	k: 4280000	n:4280000
KS ci ratio: 8.554119e-01	ci left: 2.854329e-06	ci right 7.216902e-06	k: 20	n:4280000
TNFRSF10C   4280000 perm   8571 sec   (499 perm/sec)   p_kst 4.672897e-06   p_cons 1   p_joint 3.294393e-05

Joint ci ratio: 3.278014e-01	ci left: 2.788012e-05	ci right 3.901389e-05	k: 142	n:4290000
Cons ci ratio: 9.137525e-07	ci left: 9.999991e-01	ci right 1	k: 4290000	n:4290000
KS ci ratio: 8.554119e-01	ci left: 2.847676e-06	ci right 7.200079e-06	k: 20	n:4290000
TNFRSF10C   4290000 perm   8610 sec   (498 perm/sec)   p_kst 4.662005e-06   p_cons 1   p_joint 3.310023e-05

Joint ci ratio: 3.266612e-01	ci left: 2.802874e-05	ci right 3.917475e-05	k: 143	n:4300000
Cons ci ratio: 9.116275e-07	ci left: 9.999991e-01	ci right 1	k: 4300000	n:4300000
KS ci ratio: 8.357446e-01	ci left: 3.023103e-06	ci right 7.465277e-06	k: 21	n:4300000
TNFRSF10C   4300000 perm   8650 sec   (497 perm/sec)   p_kst 4.883721e-06   p_cons 1   p_joint 3.325581e-05

Joint ci ratio: 3.266612e-01	ci left: 2.796371e-05	ci right 3.908386e-05	k: 143	n:4310000
Cons ci ratio: 9.095123e-07	ci left: 9.999991e-01	ci right 1	k: 4310000	n:4310000
KS ci ratio: 8.357446e-01	ci left: 3.016089e-06	ci right 7.447956e-06	k: 21	n:4310000
TNFRSF10C   4310000 perm   8691 sec   (496 perm/sec)   p_kst 4.872390e-06   p_cons 1   p_joint 3.317865e-05

Joint ci ratio: 3.255328e-01	ci left: 2.811151e-05	ci right 3.924375e-05	k: 144	n:4320000
Cons ci ratio: 9.074070e-07	ci left: 9.999991e-01	ci right 1	k: 4320000	n:4320000
KS ci ratio: 8.357446e-01	ci left: 3.009107e-06	ci right 7.430715e-06	k: 21	n:4320000
TNFRSF10C   4320000 perm   8729 sec   (495 perm/sec)   p_kst 4.861111e-06   p_cons 1   p_joint 3.333333e-05

Joint ci ratio: 3.255328e-01	ci left: 2.804659e-05	ci right 3.915312e-05	k: 144	n:4330000
Cons ci ratio: 9.053114e-07	ci left: 9.999991e-01	ci right 1	k: 4330000	n:4330000
KS ci ratio: 8.357446e-01	ci left: 3.002157e-06	ci right 7.413554e-06	k: 21	n:4330000
TNFRSF10C   4330000 perm   8768 sec   (494 perm/sec)   p_kst 4.849885e-06   p_cons 1   p_joint 3.325635e-05

Joint ci ratio: 3.255328e-01	ci left: 2.798196e-05	ci right 3.906291e-05	k: 144	n:4340000
Cons ci ratio: 9.032254e-07	ci left: 9.999992e-01	ci right 1	k: 4340000	n:4340000
KS ci ratio: 8.357446e-01	ci left: 2.995240e-06	ci right 7.396472e-06	k: 21	n:4340000
TNFRSF10C   4340000 perm   8811 sec   (493 perm/sec)   p_kst 4.838710e-06   p_cons 1   p_joint 3.317972e-05

Joint ci ratio: 3.255328e-01	ci left: 2.791764e-05	ci right 3.897311e-05	k: 144	n:4350000
Cons ci ratio: 9.011490e-07	ci left: 9.999992e-01	ci right 1	k: 4350000	n:4350000
KS ci ratio: 8.357446e-01	ci left: 2.988354e-06	ci right 7.379469e-06	k: 21	n:4350000
TNFRSF10C   4350000 perm   8850 sec   (492 perm/sec)   p_kst 4.827586e-06   p_cons 1   p_joint 3.310345e-05

Joint ci ratio: 3.255328e-01	ci left: 2.785361e-05	ci right 3.888372e-05	k: 144	n:4360000
Cons ci ratio: 8.990822e-07	ci left: 9.999992e-01	ci right 1	k: 4360000	n:4360000
KS ci ratio: 8.357446e-01	ci left: 2.981500e-06	ci right 7.362544e-06	k: 21	n:4360000
TNFRSF10C   4360000 perm   8892 sec   (490 perm/sec)   p_kst 4.816514e-06   p_cons 1   p_joint 3.302752e-05

Joint ci ratio: 3.244161e-01	ci left: 2.800004e-05	ci right 3.904218e-05	k: 145	n:4370000
Cons ci ratio: 8.970248e-07	ci left: 9.999992e-01	ci right 1	k: 4370000	n:4370000
KS ci ratio: 8.357446e-01	ci left: 2.974678e-06	ci right 7.345696e-06	k: 21	n:4370000
TNFRSF10C   4370000 perm   8933 sec   (489 perm/sec)   p_kst 4.805492e-06   p_cons 1   p_joint 3.318078e-05

Joint ci ratio: 3.244161e-01	ci left: 2.793611e-05	ci right 3.895304e-05	k: 145	n:4380000
Cons ci ratio: 8.949768e-07	ci left: 9.999992e-01	ci right 1	k: 4380000	n:4380000
KS ci ratio: 8.357446e-01	ci left: 2.967886e-06	ci right 7.328925e-06	k: 21	n:4380000
TNFRSF10C   4380000 perm   8973 sec   (488 perm/sec)   p_kst 4.794521e-06   p_cons 1   p_joint 3.310502e-05

Joint ci ratio: 3.244161e-01	ci left: 2.787247e-05	ci right 3.886431e-05	k: 145	n:4390000
Cons ci ratio: 8.929381e-07	ci left: 9.999992e-01	ci right 1	k: 4390000	n:4390000
KS ci ratio: 8.357446e-01	ci left: 2.961126e-06	ci right 7.312230e-06	k: 21	n:4390000
TNFRSF10C   4390000 perm   9016 sec   (487 perm/sec)   p_kst 4.783599e-06   p_cons 1   p_joint 3.302961e-05

Joint ci ratio: 3.222166e-01	ci left: 2.822679e-05	ci right 3.926729e-05	k: 147	n:4400000
Cons ci ratio: 8.909087e-07	ci left: 9.999992e-01	ci right 1	k: 4400000	n:4400000
KS ci ratio: 8.357446e-01	ci left: 2.954396e-06	ci right 7.295611e-06	k: 21	n:4400000
TNFRSF10C   4400000 perm   9055 sec   (486 perm/sec)   p_kst 4.772727e-06   p_cons 1   p_joint 3.340909e-05

Joint ci ratio: 3.222166e-01	ci left: 2.816278e-05	ci right 3.917825e-05	k: 147	n:4410000
Cons ci ratio: 8.888885e-07	ci left: 9.999992e-01	ci right 1	k: 4410000	n:4410000
KS ci ratio: 8.357446e-01	ci left: 2.947696e-06	ci right 7.279068e-06	k: 21	n:4410000
TNFRSF10C   4410000 perm   9095 sec   (485 perm/sec)   p_kst 4.761905e-06   p_cons 1   p_joint 3.333333e-05

Joint ci ratio: 3.222166e-01	ci left: 2.809906e-05	ci right 3.908961e-05	k: 147	n:4420000
Cons ci ratio: 8.868774e-07	ci left: 9.999992e-01	ci right 1	k: 4420000	n:4420000
KS ci ratio: 8.357446e-01	ci left: 2.941027e-06	ci right 7.262600e-06	k: 21	n:4420000
TNFRSF10C   4420000 perm   9134 sec   (484 perm/sec)   p_kst 4.751131e-06   p_cons 1   p_joint 3.325792e-05

Joint ci ratio: 3.211335e-01	ci left: 2.824314e-05	ci right 3.924527e-05	k: 148	n:4430000
Cons ci ratio: 8.848754e-07	ci left: 9.999992e-01	ci right 1	k: 4430000	n:4430000
KS ci ratio: 8.357446e-01	ci left: 2.934389e-06	ci right 7.246206e-06	k: 21	n:4430000
TNFRSF10C   4430000 perm   9174 sec   (483 perm/sec)   p_kst 4.740406e-06   p_cons 1   p_joint 3.340858e-05

Joint ci ratio: 3.211335e-01	ci left: 2.817953e-05	ci right 3.915688e-05	k: 148	n:4440000
Cons ci ratio: 8.828825e-07	ci left: 9.999992e-01	ci right 1	k: 4440000	n:4440000
KS ci ratio: 8.357446e-01	ci left: 2.927780e-06	ci right 7.229885e-06	k: 21	n:4440000
TNFRSF10C   4440000 perm   9219 sec   (482 perm/sec)   p_kst 4.729730e-06   p_cons 1   p_joint 3.333333e-05

Joint ci ratio: 3.211335e-01	ci left: 2.811621e-05	ci right 3.906888e-05	k: 148	n:4450000
Cons ci ratio: 8.808985e-07	ci left: 9.999992e-01	ci right 1	k: 4450000	n:4450000
KS ci ratio: 8.357446e-01	ci left: 2.921200e-06	ci right 7.213638e-06	k: 21	n:4450000
TNFRSF10C   4450000 perm   9264 sec   (480 perm/sec)   p_kst 4.719101e-06   p_cons 1   p_joint 3.325843e-05

Joint ci ratio: 3.211335e-01	ci left: 2.805317e-05	ci right 3.898129e-05	k: 148	n:4460000
Cons ci ratio: 8.789234e-07	ci left: 9.999992e-01	ci right 1	k: 4460000	n:4460000
KS ci ratio: 8.357447e-01	ci left: 2.914650e-06	ci right 7.197464e-06	k: 21	n:4460000
TNFRSF10C   4460000 perm   9305 sec   (479 perm/sec)   p_kst 4.708520e-06   p_cons 1   p_joint 3.318386e-05

Joint ci ratio: 3.211335e-01	ci left: 2.799041e-05	ci right 3.889408e-05	k: 148	n:4470000
Cons ci ratio: 8.769571e-07	ci left: 9.999992e-01	ci right 1	k: 4470000	n:4470000
KS ci ratio: 8.357447e-01	ci left: 2.908130e-06	ci right 7.181363e-06	k: 21	n:4470000
TNFRSF10C   4470000 perm   9349 sec   (478 perm/sec)   p_kst 4.697987e-06   p_cons 1   p_joint 3.310962e-05

Joint ci ratio: 3.211335e-01	ci left: 2.792793e-05	ci right 3.880726e-05	k: 148	n:4480000
Cons ci ratio: 8.749996e-07	ci left: 9.999992e-01	ci right 1	k: 4480000	n:4480000
KS ci ratio: 8.357447e-01	ci left: 2.901639e-06	ci right 7.165333e-06	k: 21	n:4480000
TNFRSF10C   4480000 perm   9389 sec   (477 perm/sec)   p_kst 4.687500e-06   p_cons 1   p_joint 3.303571e-05

Joint ci ratio: 3.211335e-01	ci left: 2.786573e-05	ci right 3.872083e-05	k: 148	n:4490000
Cons ci ratio: 8.730508e-07	ci left: 9.999992e-01	ci right 1	k: 4490000	n:4490000
KS ci ratio: 8.357447e-01	ci left: 2.895176e-06	ci right 7.149374e-06	k: 21	n:4490000
TNFRSF10C   4490000 perm   9429 sec   (476 perm/sec)   p_kst 4.677060e-06   p_cons 1   p_joint 3.296214e-05

Joint ci ratio: 3.211336e-01	ci left: 2.780380e-05	ci right 3.863479e-05	k: 148	n:4500000
Cons ci ratio: 8.711107e-07	ci left: 9.999992e-01	ci right 1	k: 4500000	n:4500000
KS ci ratio: 8.357447e-01	ci left: 2.888742e-06	ci right 7.133487e-06	k: 21	n:4500000
TNFRSF10C   4500000 perm   9471 sec   (475 perm/sec)   p_kst 4.666667e-06   p_cons 1   p_joint 3.288889e-05

Joint ci ratio: 3.200613e-01	ci left: 2.794604e-05	ci right 3.878863e-05	k: 149	n:4510000
Cons ci ratio: 8.691792e-07	ci left: 9.999992e-01	ci right 1	k: 4510000	n:4510000
KS ci ratio: 8.357447e-01	ci left: 2.882337e-06	ci right 7.117670e-06	k: 21	n:4510000
TNFRSF10C   4510000 perm   9514 sec   (474 perm/sec)   p_kst 4.656319e-06   p_cons 1   p_joint 3.303769e-05

Joint ci ratio: 3.200613e-01	ci left: 2.788422e-05	ci right 3.870282e-05	k: 149	n:4520000
Cons ci ratio: 8.672563e-07	ci left: 9.999992e-01	ci right 1	k: 4520000	n:4520000
KS ci ratio: 8.357447e-01	ci left: 2.875960e-06	ci right 7.101923e-06	k: 21	n:4520000
TNFRSF10C   4520000 perm   9557 sec   (473 perm/sec)   p_kst 4.646018e-06   p_cons 1   p_joint 3.296460e-05

Joint ci ratio: 3.189997e-01	ci left: 2.802571e-05	ci right 3.885577e-05	k: 150	n:4530000
Cons ci ratio: 8.653418e-07	ci left: 9.999992e-01	ci right 1	k: 4530000	n:4530000
KS ci ratio: 8.357447e-01	ci left: 2.869612e-06	ci right 7.086245e-06	k: 21	n:4530000
TNFRSF10C   4530000 perm   9604 sec   (472 perm/sec)   p_kst 4.635762e-06   p_cons 1   p_joint 3.311258e-05

Joint ci ratio: 3.179486e-01	ci left: 2.816664e-05	ci right 3.900800e-05	k: 151	n:4540000
Cons ci ratio: 8.634357e-07	ci left: 9.999992e-01	ci right 1	k: 4540000	n:4540000
KS ci ratio: 8.357447e-01	ci left: 2.863291e-06	ci right 7.070637e-06	k: 21	n:4540000
TNFRSF10C   4540000 perm   9646 sec   (471 perm/sec)   p_kst 4.625551e-06   p_cons 1   p_joint 3.325991e-05

Joint ci ratio: 3.179486e-01	ci left: 2.810474e-05	ci right 3.892227e-05	k: 151	n:4550000
Cons ci ratio: 8.615381e-07	ci left: 9.999992e-01	ci right 1	k: 4550000	n:4550000
KS ci ratio: 8.357447e-01	ci left: 2.856998e-06	ci right 7.055097e-06	k: 21	n:4550000
TNFRSF10C   4550000 perm   9689 sec   (470 perm/sec)   p_kst 4.615385e-06   p_cons 1   p_joint 3.318681e-05

Joint ci ratio: 3.179487e-01	ci left: 2.804310e-05	ci right 3.883691e-05	k: 151	n:4560000
Cons ci ratio: 8.596487e-07	ci left: 9.999992e-01	ci right 1	k: 4560000	n:4560000
KS ci ratio: 8.357447e-01	ci left: 2.850733e-06	ci right 7.039625e-06	k: 21	n:4560000
TNFRSF10C   4560000 perm   9735 sec   (468 perm/sec)   p_kst 4.605263e-06   p_cons 1   p_joint 3.311404e-05

Joint ci ratio: 3.179487e-01	ci left: 2.798174e-05	ci right 3.875193e-05	k: 151	n:4570000
Cons ci ratio: 8.577677e-07	ci left: 9.999992e-01	ci right 1	k: 4570000	n:4570000
KS ci ratio: 8.357447e-01	ci left: 2.844495e-06	ci right 7.024221e-06	k: 21	n:4570000
TNFRSF10C   4570000 perm   9776 sec   (467 perm/sec)   p_kst 4.595186e-06   p_cons 1   p_joint 3.304158e-05

Joint ci ratio: 3.200614e-01	ci left: 2.751892e-05	ci right 3.819579e-05	k: 149	n:4580000
Cons ci ratio: 8.558948e-07	ci left: 9.999992e-01	ci right 1	k: 4580000	n:4580000
KS ci ratio: 8.357447e-01	ci left: 2.838284e-06	ci right 7.008885e-06	k: 21	n:4580000
TNFRSF10C   4580000 perm   9817 sec   (467 perm/sec)   p_kst 4.585153e-06   p_cons 1   p_joint 3.253275e-05

Joint ci ratio: 3.200614e-01	ci left: 2.745897e-05	ci right 3.811258e-05	k: 149	n:4590000
Cons ci ratio: 8.540301e-07	ci left: 9.999992e-01	ci right 1	k: 4590000	n:4590000
KS ci ratio: 8.357447e-01	ci left: 2.832100e-06	ci right 6.993615e-06	k: 21	n:4590000
TNFRSF10C   4590000 perm   9861 sec   (465 perm/sec)   p_kst 4.575163e-06   p_cons 1   p_joint 3.246187e-05

Joint ci ratio: 3.200614e-01	ci left: 2.739927e-05	ci right 3.802973e-05	k: 149	n:4600000
Cons ci ratio: 8.521735e-07	ci left: 9.999992e-01	ci right 1	k: 4600000	n:4600000
KS ci ratio: 8.357447e-01	ci left: 2.825944e-06	ci right 6.978411e-06	k: 21	n:4600000
TNFRSF10C   4600000 perm   9902 sec   (465 perm/sec)   p_kst 4.565217e-06   p_cons 1   p_joint 3.239130e-05

Joint ci ratio: 3.200614e-01	ci left: 2.733984e-05	ci right 3.794723e-05	k: 149	n:4610000
Cons ci ratio: 8.503250e-07	ci left: 9.999992e-01	ci right 1	k: 4610000	n:4610000
KS ci ratio: 8.357447e-01	ci left: 2.819814e-06	ci right 6.963274e-06	k: 21	n:4610000
TNFRSF10C   4610000 perm   9944 sec   (464 perm/sec)   p_kst 4.555315e-06   p_cons 1   p_joint 3.232104e-05

Joint ci ratio: 3.200614e-01	ci left: 2.728066e-05	ci right 3.786510e-05	k: 149	n:4620000
Cons ci ratio: 8.484845e-07	ci left: 9.999992e-01	ci right 1	k: 4620000	n:4620000
KS ci ratio: 8.357447e-01	ci left: 2.813710e-06	ci right 6.948202e-06	k: 21	n:4620000
TNFRSF10C   4620000 perm   9987 sec   (463 perm/sec)   p_kst 4.545455e-06   p_cons 1   p_joint 3.225108e-05

Joint ci ratio: 3.200614e-01	ci left: 2.722174e-05	ci right 3.778331e-05	k: 149	n:4630000
Cons ci ratio: 8.466519e-07	ci left: 9.999992e-01	ci right 1	k: 4630000	n:4630000
KS ci ratio: 8.357447e-01	ci left: 2.807633e-06	ci right 6.933195e-06	k: 21	n:4630000
TNFRSF10C   4630000 perm   10031 sec   (462 perm/sec)   p_kst 4.535637e-06   p_cons 1   p_joint 3.218143e-05

Joint ci ratio: 3.200615e-01	ci left: 2.716307e-05	ci right 3.770188e-05	k: 149	n:4640000
Cons ci ratio: 8.448272e-07	ci left: 9.999992e-01	ci right 1	k: 4640000	n:4640000
KS ci ratio: 8.357447e-01	ci left: 2.801582e-06	ci right 6.918253e-06	k: 21	n:4640000
TNFRSF10C   4640000 perm   10073 sec   (461 perm/sec)   p_kst 4.525862e-06   p_cons 1   p_joint 3.211207e-05

Joint ci ratio: 3.200615e-01	ci left: 2.710466e-05	ci right 3.762081e-05	k: 149	n:4650000
Cons ci ratio: 8.430104e-07	ci left: 9.999992e-01	ci right 1	k: 4650000	n:4650000
KS ci ratio: 8.357447e-01	ci left: 2.795557e-06	ci right 6.903375e-06	k: 21	n:4650000
TNFRSF10C   4650000 perm   10117 sec   (460 perm/sec)   p_kst 4.516129e-06   p_cons 1   p_joint 3.204301e-05

Joint ci ratio: 3.200615e-01	ci left: 2.704649e-05	ci right 3.754007e-05	k: 149	n:4660000
Cons ci ratio: 8.412014e-07	ci left: 9.999992e-01	ci right 1	k: 4660000	n:4660000
KS ci ratio: 8.357447e-01	ci left: 2.789558e-06	ci right 6.888561e-06	k: 21	n:4660000
TNFRSF10C   4660000 perm   10161 sec   (459 perm/sec)   p_kst 4.506438e-06   p_cons 1   p_joint 3.197425e-05

Joint ci ratio: 3.189999e-01	ci left: 2.718554e-05	ci right 3.769094e-05	k: 150	n:4670000
Cons ci ratio: 8.394001e-07	ci left: 9.999992e-01	ci right 1	k: 4670000	n:4670000
KS ci ratio: 8.357448e-01	ci left: 2.783585e-06	ci right 6.873810e-06	k: 21	n:4670000
TNFRSF10C   4670000 perm   10205 sec   (458 perm/sec)   p_kst 4.496788e-06   p_cons 1   p_joint 3.211991e-05

Joint ci ratio: 3.189999e-01	ci left: 2.712745e-05	ci right 3.761040e-05	k: 150	n:4680000
Cons ci ratio: 8.376065e-07	ci left: 9.999992e-01	ci right 1	k: 4680000	n:4680000
KS ci ratio: 8.357448e-01	ci left: 2.777637e-06	ci right 6.859122e-06	k: 21	n:4680000
TNFRSF10C   4680000 perm   10249 sec   (457 perm/sec)   p_kst 4.487179e-06   p_cons 1   p_joint 3.205128e-05

Joint ci ratio: 3.189999e-01	ci left: 2.706961e-05	ci right 3.753021e-05	k: 150	n:4690000
Cons ci ratio: 8.358205e-07	ci left: 9.999992e-01	ci right 1	k: 4690000	n:4690000
KS ci ratio: 8.357448e-01	ci left: 2.771714e-06	ci right 6.844497e-06	k: 21	n:4690000
TNFRSF10C   4690000 perm   10292 sec   (456 perm/sec)   p_kst 4.477612e-06   p_cons 1   p_joint 3.198294e-05

Joint ci ratio: 3.189999e-01	ci left: 2.701201e-05	ci right 3.745036e-05	k: 150	n:4700000
Cons ci ratio: 8.340422e-07	ci left: 9.999992e-01	ci right 1	k: 4700000	n:4700000
KS ci ratio: 8.357448e-01	ci left: 2.765817e-06	ci right 6.829935e-06	k: 21	n:4700000
TNFRSF10C   4700000 perm   10336 sec   (455 perm/sec)   p_kst 4.468085e-06   p_cons 1   p_joint 3.191489e-05

Joint ci ratio: 3.189999e-01	ci left: 2.695466e-05	ci right 3.737084e-05	k: 150	n:4710000
Cons ci ratio: 8.322714e-07	ci left: 9.999992e-01	ci right 1	k: 4710000	n:4710000
KS ci ratio: 8.357448e-01	ci left: 2.759945e-06	ci right 6.815434e-06	k: 21	n:4710000
TNFRSF10C   4710000 perm   10379 sec   (454 perm/sec)   p_kst 4.458599e-06   p_cons 1   p_joint 3.184713e-05

Joint ci ratio: 3.438020e-01	ci left: 2.281802e-05	ci right 3.247420e-05	k: 129	n:4720000
Cons ci ratio: 8.305081e-07	ci left: 9.999992e-01	ci right 1	k: 4720000	n:4720000
KS ci ratio: 8.357448e-01	ci left: 2.754098e-06	ci right 6.800994e-06	k: 21	n:4720000
TNFRSF10C   4720000 perm   10422 sec   (453 perm/sec)   p_kst 4.449153e-06   p_cons 1   p_joint 2.733051e-05

Joint ci ratio: 3.438020e-01	ci left: 2.276978e-05	ci right 3.240554e-05	k: 129	n:4730000
Cons ci ratio: 8.287523e-07	ci left: 9.999992e-01	ci right 1	k: 4730000	n:4730000
KS ci ratio: 8.357448e-01	ci left: 2.748275e-06	ci right 6.786616e-06	k: 21	n:4730000
TNFRSF10C   4730000 perm   10467 sec   (452 perm/sec)   p_kst 4.439746e-06   p_cons 1   p_joint 2.727273e-05

Joint ci ratio: 3.438020e-01	ci left: 2.272174e-05	ci right 3.233717e-05	k: 129	n:4740000
Cons ci ratio: 8.270039e-07	ci left: 9.999992e-01	ci right 1	k: 4740000	n:4740000
KS ci ratio: 8.357448e-01	ci left: 2.742477e-06	ci right 6.772298e-06	k: 21	n:4740000
TNFRSF10C   4740000 perm   10513 sec   (451 perm/sec)   p_kst 4.430380e-06   p_cons 1   p_joint 2.721519e-05

Joint ci ratio: 3.438020e-01	ci left: 2.267391e-05	ci right 3.226910e-05	k: 129	n:4750000
Cons ci ratio: 8.252628e-07	ci left: 9.999992e-01	ci right 1	k: 4750000	n:4750000
KS ci ratio: 8.357448e-01	ci left: 2.736703e-06	ci right 6.758041e-06	k: 21	n:4750000
TNFRSF10C   4750000 perm   10558 sec   (450 perm/sec)   p_kst 4.421053e-06   p_cons 1   p_joint 2.715789e-05

Joint ci ratio: 3.438020e-01	ci left: 2.262627e-05	ci right 3.220130e-05	k: 129	n:4760000
Cons ci ratio: 8.235291e-07	ci left: 9.999992e-01	ci right 1	k: 4760000	n:4760000
KS ci ratio: 8.357448e-01	ci left: 2.730954e-06	ci right 6.743843e-06	k: 21	n:4760000
TNFRSF10C   4760000 perm   10603 sec   (449 perm/sec)   p_kst 4.411765e-06   p_cons 1   p_joint 2.710084e-05

Joint ci ratio: 3.438020e-01	ci left: 2.257884e-05	ci right 3.213380e-05	k: 129	n:4770000
Cons ci ratio: 8.218026e-07	ci left: 9.999992e-01	ci right 1	k: 4770000	n:4770000
KS ci ratio: 8.357448e-01	ci left: 2.725229e-06	ci right 6.729705e-06	k: 21	n:4770000
TNFRSF10C   4770000 perm   10650 sec   (448 perm/sec)   p_kst 4.402516e-06   p_cons 1   p_joint 2.704403e-05

Joint ci ratio: 3.438020e-01	ci left: 2.253160e-05	ci right 3.206657e-05	k: 129	n:4780000
Cons ci ratio: 8.200833e-07	ci left: 9.999992e-01	ci right 1	k: 4780000	n:4780000
KS ci ratio: 8.357448e-01	ci left: 2.719527e-06	ci right 6.715626e-06	k: 21	n:4780000
TNFRSF10C   4780000 perm   10692 sec   (447 perm/sec)   p_kst 4.393305e-06   p_cons 1   p_joint 2.698745e-05

Joint ci ratio: 3.438020e-01	ci left: 2.248456e-05	ci right 3.199963e-05	k: 129	n:4790000
Cons ci ratio: 8.183713e-07	ci left: 9.999992e-01	ci right 1	k: 4790000	n:4790000
KS ci ratio: 8.357448e-01	ci left: 2.713850e-06	ci right 6.701606e-06	k: 21	n:4790000
TNFRSF10C   4790000 perm   10738 sec   (446 perm/sec)   p_kst 4.384134e-06   p_cons 1   p_joint 2.693111e-05

Joint ci ratio: 3.438021e-01	ci left: 2.243772e-05	ci right 3.193296e-05	k: 129	n:4800000
Cons ci ratio: 8.166663e-07	ci left: 9.999992e-01	ci right 1	k: 4800000	n:4800000
KS ci ratio: 8.357448e-01	ci left: 2.708196e-06	ci right 6.687645e-06	k: 21	n:4800000
TNFRSF10C   4800000 perm   10783 sec   (445 perm/sec)   p_kst 4.375000e-06   p_cons 1   p_joint 2.687500e-05

Joint ci ratio: 3.438021e-01	ci left: 2.239107e-05	ci right 3.186657e-05	k: 129	n:4810000
Cons ci ratio: 8.149685e-07	ci left: 9.999992e-01	ci right 1	k: 4810000	n:4810000
KS ci ratio: 8.357448e-01	ci left: 2.702566e-06	ci right 6.673741e-06	k: 21	n:4810000
TNFRSF10C   4810000 perm   10829 sec   (444 perm/sec)   p_kst 4.365904e-06   p_cons 1   p_joint 2.681913e-05

Joint ci ratio: 3.424873e-01	ci left: 2.253421e-05	ci right 3.202574e-05	k: 130	n:4820000
Cons ci ratio: 8.132777e-07	ci left: 9.999992e-01	ci right 1	k: 4820000	n:4820000
KS ci ratio: 8.357448e-01	ci left: 2.696959e-06	ci right 6.659895e-06	k: 21	n:4820000
TNFRSF10C   4820000 perm   10873 sec   (443 perm/sec)   p_kst 4.356846e-06   p_cons 1   p_joint 2.697095e-05

Joint ci ratio: 3.478391e-01	ci left: 2.173118e-05	ci right 3.105977e-05	k: 126	n:4830000
Cons ci ratio: 8.115939e-07	ci left: 9.999992e-01	ci right 1	k: 4830000	n:4830000
KS ci ratio: 8.357448e-01	ci left: 2.691375e-06	ci right 6.646106e-06	k: 21	n:4830000
TNFRSF10C   4830000 perm   10918 sec   (442 perm/sec)   p_kst 4.347826e-06   p_cons 1   p_joint 2.608696e-05

Joint ci ratio: 3.478392e-01	ci left: 2.168628e-05	ci right 3.099560e-05	k: 126	n:4840000
Cons ci ratio: 8.099170e-07	ci left: 9.999992e-01	ci right 1	k: 4840000	n:4840000
KS ci ratio: 8.357448e-01	ci left: 2.685814e-06	ci right 6.632375e-06	k: 21	n:4840000
TNFRSF10C   4840000 perm   10961 sec   (442 perm/sec)   p_kst 4.338843e-06   p_cons 1   p_joint 2.603306e-05

Joint ci ratio: 3.478392e-01	ci left: 2.164156e-05	ci right 3.093169e-05	k: 126	n:4850000
Cons ci ratio: 8.082471e-07	ci left: 9.999992e-01	ci right 1	k: 4850000	n:4850000
KS ci ratio: 8.357448e-01	ci left: 2.680276e-06	ci right 6.618700e-06	k: 21	n:4850000
TNFRSF10C   4850000 perm   11007 sec   (441 perm/sec)   p_kst 4.329897e-06   p_cons 1   p_joint 2.597938e-05

Joint ci ratio: 3.478392e-01	ci left: 2.159703e-05	ci right 3.086804e-05	k: 126	n:4860000
Cons ci ratio: 8.065840e-07	ci left: 9.999992e-01	ci right 1	k: 4860000	n:4860000
KS ci ratio: 8.357448e-01	ci left: 2.674761e-06	ci right 6.605081e-06	k: 21	n:4860000
TNFRSF10C   4860000 perm   11050 sec   (440 perm/sec)   p_kst 4.320988e-06   p_cons 1   p_joint 2.592593e-05

Joint ci ratio: 3.478392e-01	ci left: 2.155269e-05	ci right 3.080466e-05	k: 126	n:4870000
Cons ci ratio: 8.049278e-07	ci left: 9.999992e-01	ci right 1	k: 4870000	n:4870000
KS ci ratio: 8.357448e-01	ci left: 2.669269e-06	ci right 6.591518e-06	k: 21	n:4870000
TNFRSF10C   4870000 perm   11095 sec   (439 perm/sec)   p_kst 4.312115e-06   p_cons 1   p_joint 2.587269e-05

Joint ci ratio: 3.464777e-01	ci left: 2.169557e-05	ci right 3.096425e-05	k: 127	n:4880000
Cons ci ratio: 8.032784e-07	ci left: 9.999992e-01	ci right 1	k: 4880000	n:4880000
KS ci ratio: 8.357448e-01	ci left: 2.663799e-06	ci right 6.578011e-06	k: 21	n:4880000
TNFRSF10C   4880000 perm   11138 sec   (438 perm/sec)   p_kst 4.303279e-06   p_cons 1   p_joint 2.602459e-05

Joint ci ratio: 3.464778e-01	ci left: 2.165121e-05	ci right 3.090093e-05	k: 127	n:4890000
Cons ci ratio: 8.016357e-07	ci left: 9.999992e-01	ci right 1	k: 4890000	n:4890000
KS ci ratio: 8.357448e-01	ci left: 2.658352e-06	ci right 6.564559e-06	k: 21	n:4890000
TNFRSF10C   4890000 perm   11184 sec   (437 perm/sec)   p_kst 4.294479e-06   p_cons 1   p_joint 2.597137e-05

Joint ci ratio: 3.464778e-01	ci left: 2.160702e-05	ci right 3.083786e-05	k: 127	n:4900000
Cons ci ratio: 7.999997e-07	ci left: 9.999992e-01	ci right 1	k: 4900000	n:4900000
KS ci ratio: 8.357448e-01	ci left: 2.652927e-06	ci right 6.551162e-06	k: 21	n:4900000
TNFRSF10C   4900000 perm   11229 sec   (436 perm/sec)   p_kst 4.285714e-06   p_cons 1   p_joint 2.591837e-05

Joint ci ratio: 3.464778e-01	ci left: 2.156301e-05	ci right 3.077506e-05	k: 127	n:4910000
Cons ci ratio: 7.983703e-07	ci left: 9.999992e-01	ci right 1	k: 4910000	n:4910000
KS ci ratio: 8.357449e-01	ci left: 2.647523e-06	ci right 6.537820e-06	k: 21	n:4910000
TNFRSF10C   4910000 perm   11273 sec   (436 perm/sec)   p_kst 4.276986e-06   p_cons 1   p_joint 2.586558e-05

Joint ci ratio: 3.464778e-01	ci left: 2.151919e-05	ci right 3.071251e-05	k: 127	n:4920000
Cons ci ratio: 7.967476e-07	ci left: 9.999993e-01	ci right 1	k: 4920000	n:4920000
KS ci ratio: 8.357449e-01	ci left: 2.642142e-06	ci right 6.524531e-06	k: 21	n:4920000
TNFRSF10C   4920000 perm   11317 sec   (435 perm/sec)   p_kst 4.268293e-06   p_cons 1   p_joint 2.581301e-05

Joint ci ratio: 3.464778e-01	ci left: 2.147554e-05	ci right 3.065021e-05	k: 127	n:4930000
Cons ci ratio: 7.951315e-07	ci left: 9.999993e-01	ci right 1	k: 4930000	n:4930000
KS ci ratio: 8.357449e-01	ci left: 2.636783e-06	ci right 6.511297e-06	k: 21	n:4930000
TNFRSF10C   4930000 perm   11363 sec   (434 perm/sec)   p_kst 4.259635e-06   p_cons 1   p_joint 2.576065e-05

Joint ci ratio: 3.464778e-01	ci left: 2.143206e-05	ci right 3.058817e-05	k: 127	n:4940000
Cons ci ratio: 7.935219e-07	ci left: 9.999993e-01	ci right 1	k: 4940000	n:4940000
KS ci ratio: 8.357449e-01	ci left: 2.631445e-06	ci right 6.498116e-06	k: 21	n:4940000
TNFRSF10C   4940000 perm   11408 sec   (433 perm/sec)   p_kst 4.251012e-06   p_cons 1   p_joint 2.570850e-05

Joint ci ratio: 3.464778e-01	ci left: 2.138877e-05	ci right 3.052637e-05	k: 127	n:4950000
Cons ci ratio: 7.919189e-07	ci left: 9.999993e-01	ci right 1	k: 4950000	n:4950000
KS ci ratio: 8.357449e-01	ci left: 2.626129e-06	ci right 6.484989e-06	k: 21	n:4950000
TNFRSF10C   4950000 perm   11455 sec   (432 perm/sec)   p_kst 4.242424e-06   p_cons 1   p_joint 2.565657e-05

Joint ci ratio: 3.464778e-01	ci left: 2.134564e-05	ci right 3.046483e-05	k: 127	n:4960000
Cons ci ratio: 7.903223e-07	ci left: 9.999993e-01	ci right 1	k: 4960000	n:4960000
KS ci ratio: 8.357449e-01	ci left: 2.620835e-06	ci right 6.471914e-06	k: 21	n:4960000
TNFRSF10C   4960000 perm   11506 sec   (431 perm/sec)   p_kst 4.233871e-06   p_cons 1   p_joint 2.560484e-05

Joint ci ratio: 3.451322e-01	ci left: 2.148643e-05	ci right 3.062214e-05	k: 128	n:4970000
Cons ci ratio: 7.887321e-07	ci left: 9.999993e-01	ci right 1	k: 4970000	n:4970000
KS ci ratio: 8.357449e-01	ci left: 2.615561e-06	ci right 6.458892e-06	k: 21	n:4970000
TNFRSF10C   4970000 perm   11553 sec   (430 perm/sec)   p_kst 4.225352e-06   p_cons 1   p_joint 2.575453e-05

Joint ci ratio: 3.451323e-01	ci left: 2.144328e-05	ci right 3.056065e-05	k: 128	n:4980000
Cons ci ratio: 7.871483e-07	ci left: 9.999993e-01	ci right 1	k: 4980000	n:4980000
KS ci ratio: 8.357449e-01	ci left: 2.610309e-06	ci right 6.445923e-06	k: 21	n:4980000
TNFRSF10C   4980000 perm   11601 sec   (429 perm/sec)   p_kst 4.216867e-06   p_cons 1   p_joint 2.570281e-05

Joint ci ratio: 3.424875e-01	ci left: 2.176651e-05	ci right 3.093468e-05	k: 130	n:4990000
Cons ci ratio: 7.855708e-07	ci left: 9.999993e-01	ci right 1	k: 4990000	n:4990000
KS ci ratio: 8.357449e-01	ci left: 2.605078e-06	ci right 6.433005e-06	k: 21	n:4990000
TNFRSF10C   4990000 perm   11646 sec   (428 perm/sec)   p_kst 4.208417e-06   p_cons 1   p_joint 2.605210e-05

Joint ci ratio: 3.424875e-01	ci left: 2.172298e-05	ci right 3.087281e-05	k: 130	n:5000000
Cons ci ratio: 7.839997e-07	ci left: 9.999993e-01	ci right 1	k: 5000000	n:5000000
KS ci ratio: 8.357449e-01	ci left: 2.599868e-06	ci right 6.420139e-06	k: 21	n:5000000
TNFRSF10C   5000000 perm   11691 sec   (428 perm/sec)   p_kst 4.200000e-06   p_cons 1   p_joint 2.600000e-05

Outputting figure to mutsig2_images.part000000000179/TNFRSF10C.6_800_5000000_4.2e-06_1_2.6e-05.png
                gene_name: TNFRSF10C
               theta_stop: 0.84 
                    nperm: 5000000 
                     p_ks: 4.20e-06 
        ci_ks_bounds_left: 2.60e-06 
       ci_ks_bounds_right: 6.42e-06 
                   p_cons: 1 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1 
                  p_joint: 2.60e-05 
     ci_joint_bounds_left: 2.17e-05 
    ci_joint_bounds_right: 3.09e-05 

Current progress: 23 percent done.
TMTC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.043026e-02	ci left: 7.782343e-01	ci right 7.943986e-01	k: 7864	n:10000
Cons ci ratio: 2.471742e-02	ci left: 7.065452e-01	ci right 7.243291e-01	k: 7155	n:10000
KS ci ratio: 2.241456e-02	ci left: 7.450311e-01	ci right 7.620210e-01	k: 7536	n:10000
TMTC3   10000 perm   2 sec   (5197 perm/sec)   p_kst 7.536000e-01   p_cons 7.155000e-01   p_joint 7.864000e-01

Outputting figure to mutsig2_images.part000000000179/TMTC3.5_2797_10000_0.7536_0.7155_0.7864.png
                gene_name: TMTC3
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 25 percent done.
TNFRSF21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.668639e-01	ci left: 5.372463e-03	ci right 8.724383e-03	k: 69	n:10000
Cons ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
KS ci ratio: 2.166412e-01	ci left: 2.825837e-02	ci right 3.521793e-02	k: 316	n:10000
TNFRSF21   10000 perm   2 sec   (5070 perm/sec)   p_kst 3.160000e-02   p_cons 2.100000e-03   p_joint 6.900000e-03

Joint ci ratio: 4.169427e-01	ci left: 3.485595e-03	ci right 5.362982e-03	k: 87	n:20000
Cons ci ratio: 6.042186e-01	ci left: 1.471505e-03	ci right 2.780040e-03	k: 41	n:20000
KS ci ratio: 1.553563e-01	ci left: 2.844890e-02	ci right 3.328876e-02	k: 616	n:20000
TNFRSF21   20000 perm   4 sec   (4735 perm/sec)   p_kst 3.080000e-02   p_cons 2.050000e-03   p_joint 4.350000e-03

Joint ci ratio: 2.282778e-01	ci left: 8.621951e-03	ci right 1.087452e-02	k: 291	n:30000
Cons ci ratio: 4.646599e-01	ci left: 1.819386e-03	ci right 2.947120e-03	k: 70	n:30000
KS ci ratio: 1.258353e-01	ci left: 2.935843e-02	ci right 3.333302e-02	k: 939	n:30000
TNFRSF21   30000 perm   7 sec   (4542 perm/sec)   p_kst 3.130000e-02   p_cons 2.333333e-03   p_joint 9.700000e-03

Joint ci ratio: 2.168913e-01	ci left: 7.221300e-03	ci right 9.001222e-03	k: 323	n:40000
Cons ci ratio: 4.082129e-01	ci left: 1.832071e-03	ci right 2.792472e-03	k: 91	n:40000
KS ci ratio: 1.103168e-01	ci left: 2.890948e-02	ci right 3.230912e-02	k: 1223	n:40000
TNFRSF21   40000 perm   9 sec   (4424 perm/sec)   p_kst 3.057500e-02   p_cons 2.275000e-03   p_joint 8.075000e-03

Joint ci ratio: 2.303197e-01	ci left: 5.096658e-03	ci right 6.441699e-03	k: 287	n:50000
Cons ci ratio: 3.544634e-01	ci left: 2.008446e-03	ci right 2.890909e-03	k: 121	n:50000
KS ci ratio: 9.817526e-02	ci left: 2.938097e-02	ci right 3.243382e-02	k: 1544	n:50000
TNFRSF21   50000 perm   12 sec   (4283 perm/sec)   p_kst 3.088000e-02   p_cons 2.420000e-03   p_joint 5.740000e-03

Joint ci ratio: 2.107438e-01	ci left: 5.129090e-03	ci right 6.352797e-03	k: 343	n:60000
Cons ci ratio: 3.240239e-01	ci left: 2.039699e-03	ci right 2.842973e-03	k: 145	n:60000
KS ci ratio: 9.037880e-02	ci left: 2.902437e-02	ci right 3.178796e-02	k: 1823	n:60000
TNFRSF21   60000 perm   14 sec   (4196 perm/sec)   p_kst 3.038333e-02   p_cons 2.416667e-03   p_joint 5.716667e-03

Joint ci ratio: 2.200174e-01	ci left: 4.017668e-03	ci right 5.024084e-03	k: 315	n:70000
Cons ci ratio: 2.951073e-01	ci left: 2.143680e-03	ci right 2.898502e-03	k: 175	n:70000
KS ci ratio: 8.335197e-02	ci left: 2.935046e-02	ci right 3.191722e-02	k: 2143	n:70000
TNFRSF21   70000 perm   17 sec   (4094 perm/sec)   p_kst 3.061429e-02   p_cons 2.500000e-03   p_joint 4.500000e-03

Joint ci ratio: 2.093733e-01	ci left: 3.905765e-03	ci right 4.830746e-03	k: 348	n:80000
Cons ci ratio: 2.761462e-01	ci left: 2.165860e-03	ci right 2.870991e-03	k: 200	n:80000
KS ci ratio: 7.795697e-02	ci left: 2.944184e-02	ci right 3.184235e-02	k: 2450	n:80000
TNFRSF21   80000 perm   20 sec   (4006 perm/sec)   p_kst 3.062500e-02   p_cons 2.500000e-03   p_joint 4.350000e-03

Joint ci ratio: 1.689710e-01	ci left: 5.442009e-03	ci right 6.456898e-03	k: 534	n:90000
Cons ci ratio: 2.592779e-01	ci left: 2.205098e-03	ci right 2.872055e-03	k: 227	n:90000
KS ci ratio: 7.203442e-02	ci left: 3.070686e-02	ci right 3.301233e-02	k: 2866	n:90000
TNFRSF21   90000 perm   23 sec   (3930 perm/sec)   p_kst 3.184444e-02   p_cons 2.522222e-03   p_joint 5.933333e-03

Joint ci ratio: 1.662330e-01	ci left: 5.070176e-03	ci right 5.998859e-03	k: 552	n:100000
Cons ci ratio: 2.461351e-01	ci left: 2.218766e-03	ci right 2.850640e-03	k: 252	n:100000
KS ci ratio: 6.807955e-02	ci left: 3.099643e-02	ci right 3.319082e-02	k: 3208	n:100000
TNFRSF21   100000 perm   26 sec   (3831 perm/sec)   p_kst 3.208000e-02   p_cons 2.520000e-03   p_joint 5.520000e-03

Joint ci ratio: 1.676518e-01	ci left: 4.530743e-03	ci right 5.368413e-03	k: 543	n:110000
Cons ci ratio: 2.343854e-01	ci left: 2.239205e-03	ci right 2.842047e-03	k: 278	n:110000
KS ci ratio: 6.517793e-02	ci left: 3.079773e-02	ci right 3.288160e-02	k: 3501	n:110000
TNFRSF21   110000 perm   29 sec   (3743 perm/sec)   p_kst 3.182727e-02   p_cons 2.527273e-03   p_joint 4.936364e-03

Joint ci ratio: 1.636555e-01	ci left: 4.368823e-03	ci right 5.155404e-03	k: 570	n:120000
Cons ci ratio: 2.249127e-01	ci left: 2.241102e-03	ci right 2.816693e-03	k: 302	n:120000
KS ci ratio: 6.222975e-02	ci left: 3.101136e-02	ci right 3.301134e-02	k: 3840	n:120000
TNFRSF21   120000 perm   33 sec   (3664 perm/sec)   p_kst 3.200000e-02   p_cons 2.516667e-03   p_joint 4.750000e-03

Joint ci ratio: 1.697651e-01	ci left: 3.737796e-03	ci right 4.438456e-03	k: 530	n:130000
Cons ci ratio: 2.148622e-01	ci left: 2.279511e-03	ci right 2.835357e-03	k: 331	n:130000
KS ci ratio: 5.981132e-02	ci left: 3.102713e-02	ci right 3.294767e-02	k: 4157	n:130000
TNFRSF21   130000 perm   36 sec   (3594 perm/sec)   p_kst 3.197692e-02   p_cons 2.546154e-03   p_joint 4.076923e-03

Joint ci ratio: 1.582392e-01	ci left: 4.018856e-03	ci right 4.716202e-03	k: 610	n:140000
Cons ci ratio: 2.049138e-01	ci left: 2.340027e-03	ci right 2.880902e-03	k: 364	n:140000
KS ci ratio: 5.752193e-02	ci left: 3.118281e-02	ci right 3.303664e-02	k: 4494	n:140000
TNFRSF21   140000 perm   40 sec   (3490 perm/sec)   p_kst 3.210000e-02   p_cons 2.600000e-03   p_joint 4.357143e-03

Joint ci ratio: 1.373619e-01	ci left: 5.028943e-03	ci right 5.777037e-03	k: 809	n:150000
Cons ci ratio: 1.984933e-01	ci left: 2.335945e-03	ci right 2.856912e-03	k: 388	n:150000
KS ci ratio: 5.554807e-02	ci left: 3.124002e-02	ci right 3.303146e-02	k: 4819	n:150000
TNFRSF21   150000 perm   43 sec   (3451 perm/sec)   p_kst 3.212667e-02   p_cons 2.586667e-03   p_joint 5.393333e-03

Joint ci ratio: 1.418548e-01	ci left: 4.412946e-03	ci right 5.092691e-03	k: 759	n:160000
Cons ci ratio: 1.933462e-01	ci left: 2.314758e-03	ci right 2.816038e-03	k: 409	n:160000
KS ci ratio: 5.355503e-02	ci left: 3.153161e-02	ci right 3.327289e-02	k: 5183	n:160000
TNFRSF21   160000 perm   47 sec   (3406 perm/sec)   p_kst 3.239375e-02   p_cons 2.556250e-03   p_joint 4.743750e-03

Joint ci ratio: 1.374911e-01	ci left: 4.431528e-03	ci right 5.091418e-03	k: 808	n:170000
Cons ci ratio: 1.872773e-01	ci left: 2.329855e-03	ci right 2.816767e-03	k: 436	n:170000
KS ci ratio: 5.189276e-02	ci left: 3.163307e-02	ci right 3.332410e-02	k: 5520	n:170000
TNFRSF21   170000 perm   51 sec   (3365 perm/sec)   p_kst 3.247059e-02   p_cons 2.564706e-03   p_joint 4.752941e-03

Joint ci ratio: 1.392491e-01	ci left: 4.078015e-03	ci right 4.693671e-03	k: 788	n:180000
Cons ci ratio: 1.833376e-01	ci left: 2.301075e-03	ci right 2.770731e-03	k: 455	n:180000
KS ci ratio: 5.055492e-02	ci left: 3.150448e-02	ci right 3.314396e-02	k: 5817	n:180000
TNFRSF21   180000 perm   54 sec   (3324 perm/sec)   p_kst 3.231667e-02   p_cons 2.527778e-03   p_joint 4.377778e-03

Joint ci ratio: 1.358495e-01	ci left: 4.066663e-03	ci right 4.664404e-03	k: 828	n:190000
Cons ci ratio: 1.803996e-01	ci left: 2.255314e-03	ci right 2.707448e-03	k: 470	n:190000
KS ci ratio: 4.919092e-02	ci left: 3.154596e-02	ci right 3.314204e-02	k: 6144	n:190000
TNFRSF21   190000 perm   58 sec   (3283 perm/sec)   p_kst 3.233684e-02   p_cons 2.473684e-03   p_joint 4.357895e-03

Joint ci ratio: 1.336955e-01	ci left: 3.993768e-03	ci right 4.570746e-03	k: 855	n:200000
Cons ci ratio: 1.768700e-01	ci left: 2.233298e-03	ci right 2.671322e-03	k: 489	n:200000
KS ci ratio: 4.793551e-02	ci left: 3.157888e-02	ci right 3.313472e-02	k: 6470	n:200000
TNFRSF21   200000 perm   62 sec   (3237 perm/sec)   p_kst 3.235000e-02   p_cons 2.445000e-03   p_joint 4.275000e-03

Joint ci ratio: 1.394705e-01	ci left: 3.486175e-03	ci right 4.013383e-03	k: 786	n:210000
Cons ci ratio: 1.713600e-01	ci left: 2.272696e-03	ci right 2.703125e-03	k: 521	n:210000
KS ci ratio: 4.682855e-02	ci left: 3.153380e-02	ci right 3.305057e-02	k: 6780	n:210000
TNFRSF21   210000 perm   66 sec   (3198 perm/sec)   p_kst 3.228571e-02   p_cons 2.480952e-03   p_joint 3.742857e-03

Joint ci ratio: 1.387763e-01	ci left: 3.362795e-03	ci right 3.868604e-03	k: 794	n:220000
Cons ci ratio: 1.669399e-01	ci left: 2.291279e-03	ci right 2.712909e-03	k: 549	n:220000
KS ci ratio: 4.588860e-02	ci left: 3.136734e-02	ci right 3.284502e-02	k: 7062	n:220000
TNFRSF21   220000 perm   70 sec   (3161 perm/sec)   p_kst 3.210000e-02   p_cons 2.495455e-03   p_joint 3.609091e-03

Joint ci ratio: 1.359837e-01	ci left: 3.355133e-03	ci right 3.848812e-03	k: 827	n:230000
Cons ci ratio: 1.631283e-01	ci left: 2.300034e-03	ci right 2.712663e-03	k: 575	n:230000
KS ci ratio: 4.483618e-02	ci left: 3.144357e-02	ci right 3.288999e-02	k: 7397	n:230000
TNFRSF21   230000 perm   74 sec   (3123 perm/sec)   p_kst 3.216087e-02   p_cons 2.500000e-03   p_joint 3.595652e-03

Joint ci ratio: 1.040127e-01	ci left: 5.577205e-03	ci right 6.193154e-03	k: 1411	n:240000
Cons ci ratio: 1.603696e-01	ci left: 2.284158e-03	ci right 2.686341e-03	k: 595	n:240000
KS ci ratio: 4.388233e-02	ci left: 3.147258e-02	ci right 3.288875e-02	k: 7722	n:240000
TNFRSF21   240000 perm   78 sec   (3087 perm/sec)   p_kst 3.217500e-02   p_cons 2.479167e-03   p_joint 5.879167e-03

Joint ci ratio: 1.088173e-01	ci left: 4.882896e-03	ci right 5.448669e-03	k: 1290	n:250000
Cons ci ratio: 1.564781e-01	ci left: 2.308037e-03	ci right 2.703638e-03	k: 625	n:250000
KS ci ratio: 4.297033e-02	ci left: 3.152331e-02	ci right 3.291156e-02	k: 8053	n:250000
TNFRSF21   250000 perm   82 sec   (3049 perm/sec)   p_kst 3.221200e-02   p_cons 2.500000e-03   p_joint 5.160000e-03

Joint ci ratio: 1.181038e-01	ci left: 3.969965e-03	ci right 4.471955e-03	k: 1096	n:260000
Cons ci ratio: 1.527401e-01	ci left: 2.333887e-03	ci right 2.723489e-03	k: 656	n:260000
KS ci ratio: 4.216751e-02	ci left: 3.149048e-02	ci right 3.285074e-02	k: 8363	n:260000
TNFRSF21   260000 perm   86 sec   (3008 perm/sec)   p_kst 3.216538e-02   p_cons 2.523077e-03   p_joint 4.215385e-03

Joint ci ratio: 1.165759e-01	ci left: 3.927179e-03	ci right 4.416891e-03	k: 1125	n:270000
Cons ci ratio: 1.503573e-01	ci left: 2.322274e-03	ci right 2.703345e-03	k: 677	n:270000
KS ci ratio: 4.147977e-02	ci left: 3.135398e-02	ci right 3.268572e-02	k: 8644	n:270000
TNFRSF21   270000 perm   91 sec   (2974 perm/sec)   p_kst 3.201481e-02   p_cons 2.507407e-03   p_joint 4.166667e-03

Joint ci ratio: 1.147075e-01	ci left: 3.915242e-03	ci right 4.395111e-03	k: 1162	n:280000
Cons ci ratio: 1.479765e-01	ci left: 2.314974e-03	ci right 2.688300e-03	k: 699	n:280000
KS ci ratio: 4.077036e-02	ci left: 3.130873e-02	ci right 3.261527e-02	k: 8948	n:280000
TNFRSF21   280000 perm   95 sec   (2941 perm/sec)   p_kst 3.195714e-02   p_cons 2.496429e-03   p_joint 4.150000e-03

Joint ci ratio: 1.124099e-01	ci left: 3.941052e-03	ci right 4.413768e-03	k: 1210	n:290000
Cons ci ratio: 1.456043e-01	ci left: 2.311544e-03	ci right 2.677822e-03	k: 722	n:290000
KS ci ratio: 4.011855e-02	ci left: 3.123263e-02	ci right 3.251468e-02	k: 9242	n:290000
TNFRSF21   290000 perm   100 sec   (2902 perm/sec)   p_kst 3.186897e-02   p_cons 2.489655e-03   p_joint 4.172414e-03

Joint ci ratio: 1.135531e-01	ci left: 3.731922e-03	ci right 4.184410e-03	k: 1186	n:300000
Cons ci ratio: 1.427682e-01	ci left: 2.327673e-03	ci right 2.688711e-03	k: 751	n:300000
KS ci ratio: 3.942449e-02	ci left: 3.127401e-02	ci right 3.253505e-02	k: 9570	n:300000
TNFRSF21   300000 perm   105 sec   (2867 perm/sec)   p_kst 3.190000e-02   p_cons 2.503333e-03   p_joint 3.953333e-03

Joint ci ratio: 1.114137e-01	ci left: 3.755752e-03	ci right 4.201986e-03	k: 1232	n:310000
Cons ci ratio: 1.410912e-01	ci left: 2.308588e-03	ci right 2.662105e-03	k: 769	n:310000
KS ci ratio: 3.880171e-02	ci left: 3.125539e-02	ci right 3.249532e-02	k: 9880	n:310000
TNFRSF21   310000 perm   109 sec   (2834 perm/sec)   p_kst 3.187097e-02   p_cons 2.480645e-03   p_joint 3.974194e-03

Joint ci ratio: 1.140504e-01	ci left: 3.468289e-03	ci right 3.890777e-03	k: 1176	n:320000
Cons ci ratio: 1.387676e-01	ci left: 2.314851e-03	ci right 2.663007e-03	k: 795	n:320000
KS ci ratio: 3.816115e-02	ci left: 3.131238e-02	ci right 3.253362e-02	k: 10214	n:320000
TNFRSF21   320000 perm   114 sec   (2800 perm/sec)   p_kst 3.191875e-02   p_cons 2.484375e-03   p_joint 3.675000e-03

Joint ci ratio: 1.132867e-01	ci left: 3.410290e-03	ci right 3.822745e-03	k: 1192	n:330000
Cons ci ratio: 1.368894e-01	ci left: 2.309071e-03	ci right 2.651274e-03	k: 817	n:330000
KS ci ratio: 3.756786e-02	ci left: 3.133905e-02	ci right 3.254191e-02	k: 10539	n:330000
TNFRSF21   330000 perm   119 sec   (2767 perm/sec)   p_kst 3.193636e-02   p_cons 2.475758e-03   p_joint 3.612121e-03

Joint ci ratio: 1.060438e-01	ci left: 3.790604e-03	ci right 4.217918e-03	k: 1360	n:340000
Cons ci ratio: 1.349245e-01	ci left: 2.309345e-03	ci right 2.646282e-03	k: 841	n:340000
KS ci ratio: 3.699261e-02	ci left: 3.137887e-02	ci right 3.256442e-02	k: 10869	n:340000
TNFRSF21   340000 perm   124 sec   (2735 perm/sec)   p_kst 3.196765e-02   p_cons 2.473529e-03   p_joint 4.000000e-03

Joint ci ratio: 1.044442e-01	ci left: 3.799143e-03	ci right 4.220563e-03	k: 1402	n:350000
Cons ci ratio: 1.328115e-01	ci left: 2.317924e-03	ci right 2.650398e-03	k: 868	n:350000
KS ci ratio: 3.644805e-02	ci left: 3.140804e-02	ci right 3.257687e-02	k: 11196	n:350000
TNFRSF21   350000 perm   129 sec   (2704 perm/sec)   p_kst 3.198857e-02   p_cons 2.480000e-03   p_joint 4.005714e-03

Joint ci ratio: 1.067667e-01	ci left: 3.531320e-03	ci right 3.932289e-03	k: 1342	n:360000
Cons ci ratio: 1.307948e-01	ci left: 2.326065e-03	ci right 2.654247e-03	k: 895	n:360000
KS ci ratio: 3.599304e-02	ci left: 3.132282e-02	ci right 3.247362e-02	k: 11482	n:360000
TNFRSF21   360000 perm   135 sec   (2672 perm/sec)   p_kst 3.189444e-02   p_cons 2.486111e-03   p_joint 3.727778e-03

Joint ci ratio: 1.061786e-01	ci left: 3.475335e-03	ci right 3.867637e-03	k: 1357	n:370000
Cons ci ratio: 1.288672e-01	ci left: 2.333802e-03	ci right 2.657852e-03	k: 922	n:370000
KS ci ratio: 3.555465e-02	ci left: 3.124229e-02	ci right 3.237587e-02	k: 11768	n:370000
TNFRSF21   370000 perm   140 sec   (2643 perm/sec)   p_kst 3.180541e-02   p_cons 2.491892e-03   p_joint 3.667568e-03

Joint ci ratio: 1.094254e-01	ci left: 3.181561e-03	ci right 3.552391e-03	k: 1278	n:380000
Cons ci ratio: 1.269554e-01	ci left: 2.343713e-03	ci right 2.663948e-03	k: 950	n:380000
KS ci ratio: 3.516958e-02	ci left: 3.110086e-02	ci right 3.221683e-02	k: 12029	n:380000
TNFRSF21   380000 perm   145 sec   (2614 perm/sec)   p_kst 3.165526e-02   p_cons 2.500000e-03   p_joint 3.363158e-03

Joint ci ratio: 1.091309e-01	ci left: 3.117435e-03	ci right 3.479750e-03	k: 1285	n:390000
Cons ci ratio: 1.254478e-01	ci left: 2.340730e-03	ci right 2.656477e-03	k: 973	n:390000
KS ci ratio: 3.468759e-02	ci left: 3.115743e-02	ci right 3.225980e-02	k: 12365	n:390000
TNFRSF21   390000 perm   151 sec   (2583 perm/sec)   p_kst 3.170513e-02   p_cons 2.494872e-03   p_joint 3.294872e-03

Joint ci ratio: 1.085443e-01	ci left: 3.073543e-03	ci right 3.428713e-03	k: 1299	n:400000
Cons ci ratio: 1.184081e-01	ci left: 2.570663e-03	ci right 2.896607e-03	k: 1092	n:400000
KS ci ratio: 3.424160e-02	ci left: 3.118152e-02	ci right 3.227028e-02	k: 12689	n:400000
TNFRSF21   400000 perm   157 sec   (2551 perm/sec)   p_kst 3.172250e-02   p_cons 2.730000e-03   p_joint 3.247500e-03

Joint ci ratio: 1.073135e-01	ci left: 3.069774e-03	ci right 3.420232e-03	k: 1329	n:410000
Cons ci ratio: 1.170246e-01	ci left: 2.569511e-03	ci right 2.891239e-03	k: 1118	n:410000
KS ci ratio: 3.381105e-02	ci left: 3.120694e-02	ci right 3.228262e-02	k: 13014	n:410000
TNFRSF21   410000 perm   163 sec   (2521 perm/sec)   p_kst 3.174146e-02   p_cons 2.726829e-03   p_joint 3.241463e-03

Joint ci ratio: 1.058118e-01	ci left: 3.084750e-03	ci right 3.431683e-03	k: 1367	n:420000
Cons ci ratio: 1.154360e-01	ci left: 2.579997e-03	ci right 2.898353e-03	k: 1149	n:420000
KS ci ratio: 3.340797e-02	ci left: 3.120997e-02	ci right 3.227269e-02	k: 13330	n:420000
TNFRSF21   420000 perm   168 sec   (2494 perm/sec)   p_kst 3.173810e-02   p_cons 2.735714e-03   p_joint 3.254762e-03

Joint ci ratio: 1.045581e-01	ci left: 3.087737e-03	ci right 3.430639e-03	k: 1400	n:430000
Cons ci ratio: 1.137175e-01	ci left: 2.599061e-03	ci right 2.914675e-03	k: 1184	n:430000
KS ci ratio: 3.300399e-02	ci left: 3.124062e-02	ci right 3.229128e-02	k: 13658	n:430000
TNFRSF21   430000 perm   174 sec   (2465 perm/sec)   p_kst 3.176279e-02   p_cons 2.753488e-03   p_joint 3.255814e-03

Joint ci ratio: 1.000751e-01	ci left: 3.301047e-03	ci right 3.650997e-03	k: 1528	n:440000
Cons ci ratio: 1.120274e-01	ci left: 2.619501e-03	ci right 2.932558e-03	k: 1220	n:440000
KS ci ratio: 3.263602e-02	ci left: 3.122937e-02	ci right 3.226772e-02	k: 13968	n:440000
TNFRSF21   440000 perm   180 sec   (2439 perm/sec)   p_kst 3.174545e-02   p_cons 2.772727e-03   p_joint 3.472727e-03

Joint ci ratio: 9.891722e-02	ci left: 3.305700e-03	ci right 3.651853e-03	k: 1564	n:450000
Cons ci ratio: 1.106314e-01	ci left: 2.628261e-03	ci right 2.938196e-03	k: 1251	n:450000
KS ci ratio: 3.222652e-02	ci left: 3.132010e-02	ci right 3.234816e-02	k: 14324	n:450000
TNFRSF21   450000 perm   186 sec   (2414 perm/sec)   p_kst 3.183111e-02   p_cons 2.780000e-03   p_joint 3.475556e-03

Joint ci ratio: 9.876279e-02	ci left: 3.244433e-03	ci right 3.583609e-03	k: 1569	n:460000
Cons ci ratio: 1.097159e-01	ci left: 2.615519e-03	ci right 2.921233e-03	k: 1272	n:460000
KS ci ratio: 3.189155e-02	ci left: 3.129264e-02	ci right 3.230892e-02	k: 14627	n:460000
TNFRSF21   460000 perm   193 sec   (2387 perm/sec)   p_kst 3.179783e-02   p_cons 2.765217e-03   p_joint 3.410870e-03

Joint ci ratio: 9.801753e-02	ci left: 3.225208e-03	ci right 3.559684e-03	k: 1593	n:470000
Cons ci ratio: 1.087385e-01	ci left: 2.607468e-03	ci right 2.909352e-03	k: 1295	n:470000
KS ci ratio: 3.157447e-02	ci left: 3.125162e-02	ci right 3.225629e-02	k: 14923	n:470000
TNFRSF21   470000 perm   200 sec   (2355 perm/sec)   p_kst 3.175106e-02   p_cons 2.755319e-03   p_joint 3.389362e-03

Joint ci ratio: 9.701850e-02	ci left: 3.225089e-03	ci right 3.555950e-03	k: 1626	n:480000
Cons ci ratio: 1.072985e-01	ci left: 2.624093e-03	ci right 2.923625e-03	k: 1330	n:480000
KS ci ratio: 3.124334e-02	ci left: 3.125784e-02	ci right 3.225199e-02	k: 15241	n:480000
TNFRSF21   480000 perm   206 sec   (2330 perm/sec)   p_kst 3.175208e-02   p_cons 2.770833e-03   p_joint 3.387500e-03

Joint ci ratio: 9.604941e-02	ci left: 3.224992e-03	ci right 3.552352e-03	k: 1659	n:490000
Cons ci ratio: 1.061874e-01	ci left: 2.626158e-03	ci right 2.922627e-03	k: 1358	n:490000
KS ci ratio: 3.092037e-02	ci left: 3.126791e-02	ci right 3.225192e-02	k: 15561	n:490000
TNFRSF21   490000 perm   212 sec   (2307 perm/sec)   p_kst 3.175714e-02   p_cons 2.771429e-03   p_joint 3.385714e-03

Joint ci ratio: 9.579248e-02	ci left: 3.178057e-03	ci right 3.499741e-03	k: 1668	n:500000
Cons ci ratio: 1.051861e-01	ci left: 2.624260e-03	ci right 2.917549e-03	k: 1384	n:500000
KS ci ratio: 3.063710e-02	ci left: 3.121808e-02	ci right 3.219136e-02	k: 15851	n:500000
TNFRSF21   500000 perm   219 sec   (2285 perm/sec)   p_kst 3.170200e-02   p_cons 2.768000e-03   p_joint 3.336000e-03

Joint ci ratio: 9.528151e-02	ci left: 3.150190e-03	ci right 3.467258e-03	k: 1686	n:510000
Cons ci ratio: 1.039544e-01	ci left: 2.635818e-03	ci right 2.926739e-03	k: 1417	n:510000
KS ci ratio: 3.034595e-02	ci left: 3.120138e-02	ci right 3.216473e-02	k: 16157	n:510000
TNFRSF21   510000 perm   225 sec   (2263 perm/sec)   p_kst 3.168039e-02   p_cons 2.778431e-03   p_joint 3.305882e-03

Joint ci ratio: 8.118517e-02	ci left: 4.282201e-03	ci right 4.646431e-03	k: 2320	n:520000
Cons ci ratio: 1.027650e-01	ci left: 2.646951e-03	ci right 2.935556e-03	k: 1450	n:520000
KS ci ratio: 3.004693e-02	ci left: 3.121782e-02	ci right 3.217202e-02	k: 16480	n:520000
TNFRSF21   520000 perm   232 sec   (2242 perm/sec)   p_kst 3.169231e-02   p_cons 2.788462e-03   p_joint 4.461538e-03

Joint ci ratio: 8.042646e-02	ci left: 4.282746e-03	ci right 4.643459e-03	k: 2364	n:530000
Cons ci ratio: 1.016498e-01	ci left: 2.655843e-03	ci right 2.942087e-03	k: 1482	n:530000
KS ci ratio: 2.976939e-02	ci left: 3.120746e-02	ci right 3.215238e-02	k: 16789	n:530000
TNFRSF21   530000 perm   239 sec   (2221 perm/sec)   p_kst 3.167736e-02   p_cons 2.796226e-03   p_joint 4.460377e-03

Joint ci ratio: 8.073898e-02	ci left: 4.170765e-03	ci right 4.523475e-03	k: 2346	n:540000
Cons ci ratio: 1.007705e-01	ci left: 2.653590e-03	ci right 2.936971e-03	k: 1508	n:540000
KS ci ratio: 2.947449e-02	ci left: 3.124901e-02	ci right 3.218566e-02	k: 17126	n:540000
TNFRSF21   540000 perm   246 sec   (2199 perm/sec)   p_kst 3.171481e-02   p_cons 2.792593e-03   p_joint 4.344444e-03

Joint ci ratio: 8.274899e-02	ci left: 3.895435e-03	ci right 4.233458e-03	k: 2234	n:550000
Cons ci ratio: 9.988098e-02	ci left: 2.653202e-03	ci right 2.933894e-03	k: 1535	n:550000
KS ci ratio: 2.922536e-02	ci left: 3.121146e-02	ci right 3.213894e-02	k: 17420	n:550000
TNFRSF21   550000 perm   253 sec   (2178 perm/sec)   p_kst 3.167273e-02   p_cons 2.790909e-03   p_joint 4.061818e-03

Outputting figure to mutsig2_images.part000000000179/TNFRSF21.5_1992_550000_0.031673_0.0027909_0.0040618.png
                gene_name: TNFRSF21
               theta_stop: 0.100 
                    nperm: 550000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.031 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.0028 
      ci_cons_bounds_left: 0.0027 
     ci_cons_bounds_right: 0.0029 
                  p_joint: 0.0041 
     ci_joint_bounds_left: 0.0039 
    ci_joint_bounds_right: 0.0042 

Current progress: 27 percent done.
TMTC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.996134e-02	ci left: 7.860396e-01	ci right 8.019887e-01	k: 7941	n:10000
Cons ci ratio: 5.637744e-02	ci left: 3.166160e-01	ci right 3.350856e-01	k: 3258	n:10000
KS ci ratio: 2.861100e-02	ci left: 6.429732e-01	ci right 6.617380e-01	k: 6524	n:10000
TMTC4   10000 perm   2 sec   (4861 perm/sec)   p_kst 6.524000e-01   p_cons 3.258000e-01   p_joint 7.941000e-01

Outputting figure to mutsig2_images.part000000000179/TMTC4.4_2355_10000_0.6524_0.3258_0.7941.png
                gene_name: TMTC4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 29 percent done.
TNFRSF11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.870791e-02	ci left: 3.834095e-01	ci right 4.026528e-01	k: 3930	n:10000
Cons ci ratio: 4.503252e-02	ci left: 4.212652e-01	ci right 4.407750e-01	k: 4310	n:10000
KS ci ratio: 6.463583e-02	ci left: 2.601291e-01	ci right 2.776057e-01	k: 2688	n:10000
TNFRSF11B   10000 perm   2 sec   (5460 perm/sec)   p_kst 2.688000e-01   p_cons 4.310000e-01   p_joint 3.930000e-01

Outputting figure to mutsig2_images.part000000000179/TNFRSF11B.4_1226_10000_0.2688_0.431_0.393.png
                gene_name: TNFRSF11B
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 31 percent done.
TNFRSF13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.642761e-02	ci left: 4.064147e-01	ci right 4.258341e-01	k: 4161	n:10000
KS ci ratio: 1.623630e-02	ci left: 8.465185e-01	ci right 8.604749e-01	k: 8536	n:10000
TNFRSF13B   10000 perm   2 sec   (6178 perm/sec)   p_kst 8.536000e-01   p_cons 4.161000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNFRSF13B.4_902_10000_0.8536_0.4161_1.png
                gene_name: TNFRSF13B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
TNIP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.170113e-01	ci left: 9.496613e-02	ci right 1.068675e-01	k: 1008	n:10000
Cons ci ratio: 3.151217e-02	ci left: 5.977488e-01	ci right 6.169886e-01	k: 6074	n:10000
KS ci ratio: 1.491591e-01	ci left: 5.976289e-02	ci right 6.949263e-02	k: 645	n:10000
TNIP2   10000 perm   2 sec   (6157 perm/sec)   p_kst 6.450000e-02   p_cons 6.074000e-01   p_joint 1.008000e-01

Joint ci ratio: 7.037352e-02	ci left: 1.295536e-01	ci right 1.390530e-01	k: 2685	n:20000
Cons ci ratio: 2.169238e-02	ci left: 6.133815e-01	ci right 6.268836e-01	k: 12403	n:20000
KS ci ratio: 1.025756e-01	ci left: 6.454903e-02	ci right 7.157718e-02	k: 1360	n:20000
TNIP2   20000 perm   4 sec   (5365 perm/sec)   p_kst 6.800000e-02   p_cons 6.201500e-01   p_joint 1.342500e-01

Joint ci ratio: 6.349228e-02	ci left: 1.091426e-01	ci right 1.163326e-01	k: 3381	n:30000
Cons ci ratio: 1.761382e-02	ci left: 6.172536e-01	ci right 6.282560e-01	k: 18683	n:30000
KS ci ratio: 8.600098e-02	ci left: 6.197460e-02	ci right 6.757672e-02	k: 1942	n:30000
TNIP2   30000 perm   6 sec   (5001 perm/sec)   p_kst 6.473333e-02   p_cons 6.227667e-01   p_joint 1.127000e-01

Outputting figure to mutsig2_images.part000000000179/TNIP2.4_1314_30000_0.064733_0.62277_0.1127.png
                gene_name: TNIP2
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.068 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 35 percent done.
TNKS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.692423e-02	ci left: 5.199601e-01	ci right 5.396225e-01	k: 5298	n:10000
Cons ci ratio: 5.697756e-03	ci left: 9.764223e-01	ci right 9.820937e-01	k: 9794	n:10000
KS ci ratio: 4.570908e-02	ci left: 4.139884e-01	ci right 4.334561e-01	k: 4237	n:10000
TNKS   10000 perm   2 sec   (4475 perm/sec)   p_kst 4.237000e-01   p_cons 9.794000e-01   p_joint 5.298000e-01

Outputting figure to mutsig2_images.part000000000179/TNKS.4_4092_10000_0.4237_0.9794_0.5298.png
                gene_name: TNKS
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 38 percent done.
TMPRSS7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.111895e-02	ci left: 9.202817e-01	ci right 9.306688e-01	k: 9256	n:10000
Cons ci ratio: 2.572211e-02	ci left: 6.899028e-01	ci right 7.079812e-01	k: 6990	n:10000
KS ci ratio: 3.805087e-02	ci left: 5.049514e-01	ci right 5.246400e-01	k: 5148	n:10000
TMPRSS7   10000 perm   2 sec   (5346 perm/sec)   p_kst 5.148000e-01   p_cons 6.990000e-01   p_joint 9.256000e-01

Outputting figure to mutsig2_images.part000000000179/TMPRSS7.3_2214_10000_0.5148_0.699_0.9256.png
                gene_name: TMPRSS7
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 40 percent done.
TMPRSS9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.251487e-02	ci left: 1.451135e-01	ci right 1.592898e-01	k: 1521	n:10000
Cons ci ratio: 2.016804e-01	ci left: 3.271977e-02	ci right 4.015343e-02	k: 363	n:10000
KS ci ratio: 2.172642e-02	ci left: 7.565633e-01	ci right 7.732821e-01	k: 7650	n:10000
TMPRSS9   10000 perm   2 sec   (4703 perm/sec)   p_kst 7.650000e-01   p_cons 3.630000e-02   p_joint 1.521000e-01

Joint ci ratio: 7.565317e-02	ci left: 1.138548e-01	ci right 1.228565e-01	k: 2366	n:20000
Cons ci ratio: 1.513527e-01	ci left: 2.998929e-02	ci right 3.494786e-02	k: 648	n:20000
KS ci ratio: 1.558925e-02	ci left: 7.537160e-01	ci right 7.656084e-01	k: 15194	n:20000
TMPRSS9   20000 perm   5 sec   (4224 perm/sec)   p_kst 7.597000e-01   p_cons 3.240000e-02   p_joint 1.183000e-01

Joint ci ratio: 5.515694e-02	ci left: 1.401110e-01	ci right 1.480914e-01	k: 4322	n:30000
Cons ci ratio: 1.240748e-01	ci left: 3.019881e-02	ci right 3.422578e-02	k: 965	n:30000
KS ci ratio: 1.283314e-02	ci left: 7.518033e-01	ci right 7.615470e-01	k: 22701	n:30000
TMPRSS9   30000 perm   7 sec   (4074 perm/sec)   p_kst 7.567000e-01   p_cons 3.216667e-02   p_joint 1.440667e-01

Joint ci ratio: 5.377922e-02	ci left: 1.140879e-01	ci right 1.204178e-01	k: 4689	n:40000
Cons ci ratio: 1.086345e-01	ci left: 2.980990e-02	ci right 3.325856e-02	k: 1260	n:40000
KS ci ratio: 1.112516e-02	ci left: 7.520869e-01	ci right 7.605258e-01	k: 30253	n:40000
TMPRSS9   40000 perm   10 sec   (3975 perm/sec)   p_kst 7.563250e-01   p_cons 3.150000e-02   p_joint 1.172250e-01

Joint ci ratio: 5.623968e-02	ci left: 8.606392e-02	ci right 9.106396e-02	k: 4427	n:50000
Cons ci ratio: 9.749364e-02	ci left: 2.979099e-02	ci right 3.286374e-02	k: 1565	n:50000
KS ci ratio: 9.991273e-03	ci left: 7.510245e-01	ci right 7.585859e-01	k: 37741	n:50000
TMPRSS9   50000 perm   13 sec   (3888 perm/sec)   p_kst 7.548200e-01   p_cons 3.130000e-02   p_joint 8.854000e-02

Outputting figure to mutsig2_images.part000000000179/TMPRSS9.3_3248_50000_0.75482_0.0313_0.08854.png
                gene_name: TMPRSS9
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.031 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.091 

Current progress: 42 percent done.
TMX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.817468e-02	ci left: 1.307088e-01	ci right 1.443032e-01	k: 1374	n:10000
Cons ci ratio: 4.307694e-02	ci left: 4.431087e-01	ci right 4.627188e-01	k: 4529	n:10000
KS ci ratio: 1.392727e-01	ci left: 6.826660e-02	ci right 7.858355e-02	k: 733	n:10000
TMX2   10000 perm   2 sec   (6572 perm/sec)   p_kst 7.330000e-02   p_cons 4.529000e-01   p_joint 1.374000e-01

Joint ci ratio: 8.301585e-02	ci left: 9.612099e-02	ci right 1.044956e-01	k: 2005	n:20000
Cons ci ratio: 3.072514e-02	ci left: 4.417400e-01	ci right 4.555749e-01	k: 8973	n:20000
KS ci ratio: 9.801514e-02	ci left: 7.040922e-02	ci right 7.771519e-02	k: 1480	n:20000
TMX2   20000 perm   4 sec   (5605 perm/sec)   p_kst 7.400000e-02   p_cons 4.486500e-01   p_joint 1.002500e-01

Outputting figure to mutsig2_images.part000000000179/TMX2.3_923_20000_0.074_0.44865_0.10025.png
                gene_name: TMX2
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 44 percent done.
TMX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.952882e-03	ci left: 9.460656e-01	ci right 9.546696e-01	k: 9505	n:10000
Cons ci ratio: 3.596451e-02	ci left: 5.330750e-01	ci right 5.527000e-01	k: 5429	n:10000
KS ci ratio: 1.983924e-02	ci left: 7.880677e-01	ci right 8.039595e-01	k: 7961	n:10000
TMX3   10000 perm   2 sec   (5916 perm/sec)   p_kst 7.961000e-01   p_cons 5.429000e-01   p_joint 9.505000e-01

Outputting figure to mutsig2_images.part000000000179/TMX3.3_1429_10000_0.7961_0.5429_0.9505.png
                gene_name: TMX3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.95 

Current progress: 46 percent done.
TNFAIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.809059e-01	ci left: 1.641496e-02	ci right 2.187026e-02	k: 190	n:10000
Cons ci ratio: 1.980390e-01	ci left: 3.395684e-02	ci right 4.151552e-02	k: 376	n:10000
KS ci ratio: 1.369703e-01	ci left: 7.049285e-02	ci right 8.095591e-02	k: 756	n:10000
TNFAIP1   10000 perm   2 sec   (6099 perm/sec)   p_kst 7.560000e-02   p_cons 3.760000e-02   p_joint 1.900000e-02

Joint ci ratio: 1.248127e-01	ci left: 4.405941e-02	ci right 4.997318e-02	k: 939	n:20000
Cons ci ratio: 1.387992e-01	ci left: 3.568248e-02	ci right 4.105279e-02	k: 766	n:20000
KS ci ratio: 9.549654e-02	ci left: 7.397763e-02	ci right 8.144569e-02	k: 1553	n:20000
TNFAIP1   20000 perm   4 sec   (5233 perm/sec)   p_kst 7.765000e-02   p_cons 3.830000e-02   p_joint 4.695000e-02

Joint ci ratio: 1.961824e-01	ci left: 1.184400e-02	ci right 1.445155e-02	k: 393	n:30000
Cons ci ratio: 1.202678e-01	ci left: 3.213961e-02	ci right 3.628457e-02	k: 1025	n:30000
KS ci ratio: 7.841165e-02	ci left: 7.387676e-02	ci right 7.993881e-02	k: 2306	n:30000
TNFAIP1   30000 perm   6 sec   (4905 perm/sec)   p_kst 7.686667e-02   p_cons 3.416667e-02   p_joint 1.310000e-02

Joint ci ratio: 1.345617e-01	ci left: 1.937545e-02	ci right 2.219473e-02	k: 830	n:40000
Cons ci ratio: 1.037243e-01	ci left: 3.268405e-02	ci right 3.628394e-02	k: 1378	n:40000
KS ci ratio: 6.818325e-02	ci left: 7.371669e-02	ci right 7.894501e-02	k: 3052	n:40000
TNFAIP1   40000 perm   8 sec   (4736 perm/sec)   p_kst 7.630000e-02   p_cons 3.445000e-02   p_joint 2.075000e-02

Joint ci ratio: 1.315840e-01	ci left: 1.629133e-02	ci right 1.860519e-02	k: 871	n:50000
Cons ci ratio: 9.293474e-02	ci left: 3.276093e-02	ci right 3.597343e-02	k: 1717	n:50000
KS ci ratio: 6.111739e-02	ci left: 7.369189e-02	ci right 7.835747e-02	k: 3800	n:50000
TNFAIP1   50000 perm   11 sec   (4657 perm/sec)   p_kst 7.600000e-02   p_cons 3.434000e-02   p_joint 1.742000e-02

Joint ci ratio: 1.016919e-01	ci left: 2.293637e-02	ci right 2.540995e-02	k: 1449	n:60000
Cons ci ratio: 8.510725e-02	ci left: 3.269472e-02	ci right 3.561723e-02	k: 2048	n:60000
KS ci ratio: 5.562229e-02	ci left: 7.431960e-02	ci right 7.858814e-02	k: 4586	n:60000
TNFAIP1   60000 perm   13 sec   (4575 perm/sec)   p_kst 7.643333e-02   p_cons 3.413333e-02   p_joint 2.415000e-02

Joint ci ratio: 9.901561e-02	ci left: 2.081456e-02	ci right 2.299675e-02	k: 1532	n:70000
Cons ci ratio: 7.900821e-02	ci left: 3.262762e-02	ci right 3.532547e-02	k: 2377	n:70000
KS ci ratio: 5.160862e-02	ci left: 7.417441e-02	ci right 7.811796e-02	k: 5329	n:70000
TNFAIP1   70000 perm   16 sec   (4487 perm/sec)   p_kst 7.612857e-02   p_cons 3.395714e-02   p_joint 2.188571e-02

Outputting figure to mutsig2_images.part000000000179/TNFAIP1.3_975_70000_0.076129_0.033957_0.021886.png
                gene_name: TNFAIP1
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.022 
     ci_joint_bounds_left: 0.021 
    ci_joint_bounds_right: 0.023 

Current progress: 48 percent done.
TNFAIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.224759e-02	ci left: 1.774321e-01	ci right 1.927518e-01	k: 1850	n:10000
Cons ci ratio: 4.551311e-02	ci left: 4.160815e-01	ci right 4.355618e-01	k: 4258	n:10000
KS ci ratio: 1.128281e-01	ci left: 1.015915e-01	ci right 1.138381e-01	k: 1076	n:10000
TNFAIP3   10000 perm   2 sec   (5612 perm/sec)   p_kst 1.076000e-01   p_cons 4.258000e-01   p_joint 1.850000e-01

Joint ci ratio: 5.658836e-02	ci left: 1.879955e-01	ci right 1.989938e-01	k: 3869	n:20000
Cons ci ratio: 3.196277e-02	ci left: 4.223260e-01	ci right 4.360946e-01	k: 8584	n:20000
KS ci ratio: 7.994950e-02	ci left: 1.029939e-01	ci right 1.116206e-01	k: 2145	n:20000
TNFAIP3   20000 perm   4 sec   (4891 perm/sec)   p_kst 1.072500e-01   p_cons 4.292000e-01   p_joint 1.934500e-01

Outputting figure to mutsig2_images.part000000000179/TNFAIP3.3_2405_20000_0.10725_0.4292_0.19345.png
                gene_name: TNFAIP3
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 50 percent done.
TNFRSF10A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.454756e-02	ci left: 7.093708e-01	ci right 7.271019e-01	k: 7183	n:10000
Cons ci ratio: 3.541019e-02	ci left: 5.407869e-01	ci right 5.603836e-01	k: 5506	n:10000
KS ci ratio: 4.355812e-02	ci left: 4.376211e-01	ci right 4.572096e-01	k: 4474	n:10000
TNFRSF10A   10000 perm   1 sec   (6699 perm/sec)   p_kst 4.474000e-01   p_cons 5.506000e-01   p_joint 7.183000e-01

Outputting figure to mutsig2_images.part000000000179/TNFRSF10A.3_1447_10000_0.4474_0.5506_0.7183.png
                gene_name: TNFRSF10A
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 52 percent done.
TNFRSF11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.609721e-02	ci left: 2.515227e-01	ci right 2.688172e-01	k: 2601	n:10000
Cons ci ratio: 6.336175e-02	ci left: 2.679478e-01	ci right 2.855824e-01	k: 2767	n:10000
KS ci ratio: 6.030900e-02	ci left: 2.879553e-01	ci right 3.059631e-01	k: 2969	n:10000
TNFRSF11A   10000 perm   2 sec   (5775 perm/sec)   p_kst 2.969000e-01   p_cons 2.767000e-01   p_joint 2.601000e-01

Outputting figure to mutsig2_images.part000000000179/TNFRSF11A.3_1891_10000_0.2969_0.2767_0.2601.png
                gene_name: TNFRSF11A
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 54 percent done.
TNFRSF19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.186533e-02	ci left: 7.542360e-01	ci right 7.710108e-01	k: 7627	n:10000
KS ci ratio: 1.812426e-02	ci left: 8.162904e-01	ci right 8.313205e-01	k: 8239	n:10000
TNFRSF19   10000 perm   2 sec   (5842 perm/sec)   p_kst 8.239000e-01   p_cons 7.627000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNFRSF19.3_1317_10000_0.8239_0.7627_1.png
                gene_name: TNFRSF19
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
TNFRSF9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.079018e-02	ci left: 6.087955e-01	ci right 6.279355e-01	k: 6184	n:10000
Cons ci ratio: 1.078946e-01	ci left: 1.102743e-01	ci right 1.229500e-01	k: 1165	n:10000
KS ci ratio: 1.898024e-02	ci left: 8.022727e-01	ci right 8.177463e-01	k: 8101	n:10000
TNFRSF9   10000 perm   2 sec   (6355 perm/sec)   p_kst 8.101000e-01   p_cons 1.165000e-01   p_joint 6.184000e-01

Joint ci ratio: 3.023006e-02	ci left: 4.497782e-01	ci right 4.636344e-01	k: 9134	n:20000
Cons ci ratio: 7.717746e-02	ci left: 1.098234e-01	ci right 1.186891e-01	k: 2284	n:20000
KS ci ratio: 1.343597e-02	ci left: 8.042405e-01	ci right 8.151693e-01	k: 16195	n:20000
TNFRSF9   20000 perm   4 sec   (5465 perm/sec)   p_kst 8.097500e-01   p_cons 1.142000e-01   p_joint 4.567000e-01

Outputting figure to mutsig2_images.part000000000179/TNFRSF9.3_796_20000_0.80975_0.1142_0.4567.png
                gene_name: TNFRSF9
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.46 

Current progress: 58 percent done.
TNFSF14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.427232e-02	ci left: 8.765385e-01	ci right 8.892375e-01	k: 8830	n:10000
KS ci ratio: 2.580770e-02	ci left: 6.884913e-01	ci right 7.065935e-01	k: 6976	n:10000
TNFSF14   10000 perm   1 sec   (6739 perm/sec)   p_kst 6.976000e-01   p_cons 8.830000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNFSF14.3_739_10000_0.6976_0.883_1.png
                gene_name: TNFSF14
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
TNFSF15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.576435e-02	ci left: 1.653377e-01	ci right 1.802534e-01	k: 1727	n:10000
Cons ci ratio: 7.279234e-02	ci left: 2.165505e-01	ci right 2.330101e-01	k: 2247	n:10000
KS ci ratio: 1.014049e-01	ci left: 1.233692e-01	ci right 1.366472e-01	k: 1299	n:10000
TNFSF15   10000 perm   2 sec   (6529 perm/sec)   p_kst 1.299000e-01   p_cons 2.247000e-01   p_joint 1.727000e-01

Joint ci ratio: 5.606796e-02	ci left: 1.908641e-01	ci right 2.019243e-01	k: 3927	n:20000
Cons ci ratio: 5.130325e-02	ci left: 2.201197e-01	ci right 2.317601e-01	k: 4518	n:20000
KS ci ratio: 7.267225e-02	ci left: 1.223656e-01	ci right 1.316432e-01	k: 2539	n:20000
TNFSF15   20000 perm   4 sec   (5519 perm/sec)   p_kst 1.269500e-01   p_cons 2.259000e-01   p_joint 1.963500e-01

Outputting figure to mutsig2_images.part000000000179/TNFSF15.3_772_20000_0.12695_0.2259_0.19635.png
                gene_name: TNFSF15
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 62 percent done.
TNIP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.744606e-02	ci left: 8.272725e-01	ci right 8.419321e-01	k: 8347	n:10000
Cons ci ratio: 3.440563e-02	ci left: 5.550151e-01	ci right 5.745471e-01	k: 5648	n:10000
KS ci ratio: 4.284305e-02	ci left: 4.458030e-01	ci right 4.654229e-01	k: 4556	n:10000
TNIP3   10000 perm   2 sec   (6171 perm/sec)   p_kst 4.556000e-01   p_cons 5.648000e-01   p_joint 8.347000e-01

Outputting figure to mutsig2_images.part000000000179/TNIP3.3_1022_10000_0.4556_0.5648_0.8347.png
                gene_name: TNIP3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 65 percent done.
TNK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.470529e-02	ci left: 7.067471e-01	ci right 7.245272e-01	k: 7157	n:10000
KS ci ratio: 2.800798e-02	ci left: 6.526327e-01	ci right 6.712729e-01	k: 6620	n:10000
TNK1   10000 perm   2 sec   (5265 perm/sec)   p_kst 6.620000e-01   p_cons 7.157000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNK1.3_2034_10000_0.662_0.7157_1.png
                gene_name: TNK1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
TNMD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.076116e-03	ci left: 9.809150e-01	ci right 9.859977e-01	k: 9836	n:10000
Cons ci ratio: 4.243091e-02	ci left: 4.505937e-01	ci right 4.702294e-01	k: 4604	n:10000
KS ci ratio: 1.451283e-02	ci left: 8.729587e-01	ci right 8.858194e-01	k: 8795	n:10000
TNMD   10000 perm   2 sec   (6270 perm/sec)   p_kst 8.795000e-01   p_cons 4.604000e-01   p_joint 9.836000e-01

Outputting figure to mutsig2_images.part000000000179/TNMD.3_982_10000_0.8795_0.4604_0.9836.png
                gene_name: TNMD
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 69 percent done.
TNNT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.428074e-01	ci left: 2.231105e-02	ci right 2.856957e-02	k: 253	n:10000
Cons ci ratio: 2.177074e-01	ci left: 2.797424e-02	ci right 3.490226e-02	k: 313	n:10000
KS ci ratio: 1.298648e-01	ci left: 7.805288e-02	ci right 8.899118e-02	k: 834	n:10000
TNNT2   10000 perm   2 sec   (6275 perm/sec)   p_kst 8.340000e-02   p_cons 3.130000e-02   p_joint 2.530000e-02

Joint ci ratio: 1.747179e-01	ci left: 2.240180e-02	ci right 2.673793e-02	k: 490	n:20000
Cons ci ratio: 1.540727e-01	ci left: 2.893010e-02	ci right 3.380740e-02	k: 626	n:20000
KS ci ratio: 9.091253e-02	ci left: 8.117049e-02	ci right 8.895064e-02	k: 1700	n:20000
TNNT2   20000 perm   4 sec   (5212 perm/sec)   p_kst 8.500000e-02   p_cons 3.130000e-02   p_joint 2.450000e-02

Joint ci ratio: 1.649973e-01	ci left: 1.694132e-02	ci right 2.001961e-02	k: 553	n:30000
Cons ci ratio: 1.276696e-01	ci left: 2.851845e-02	ci right 3.243985e-02	k: 913	n:30000
KS ci ratio: 7.400069e-02	ci left: 8.235939e-02	ci right 8.872114e-02	k: 2565	n:30000
TNNT2   30000 perm   6 sec   (4959 perm/sec)   p_kst 8.550000e-02   p_cons 3.043333e-02   p_joint 1.843333e-02

Joint ci ratio: 1.426630e-01	ci left: 1.720201e-02	ci right 1.986854e-02	k: 740	n:40000
Cons ci ratio: 1.118823e-01	ci left: 2.810675e-02	ci right 3.146198e-02	k: 1190	n:40000
KS ci ratio: 6.422364e-02	ci left: 8.245714e-02	ci right 8.795325e-02	k: 3407	n:40000
TNNT2   40000 perm   8 sec   (4781 perm/sec)   p_kst 8.517500e-02   p_cons 2.975000e-02   p_joint 1.850000e-02

Joint ci ratio: 1.294841e-01	ci left: 1.683334e-02	ci right 1.918310e-02	k: 899	n:50000
Cons ci ratio: 9.610852e-02	ci left: 3.065034e-02	ci right 3.376428e-02	k: 1609	n:50000
KS ci ratio: 5.739196e-02	ci left: 8.288549e-02	ci right 8.780277e-02	k: 4266	n:50000
TNNT2   50000 perm   11 sec   (4649 perm/sec)   p_kst 8.532000e-02   p_cons 3.218000e-02   p_joint 1.798000e-02

Joint ci ratio: 1.042242e-01	ci left: 2.183157e-02	ci right 2.424820e-02	k: 1381	n:60000
Cons ci ratio: 8.827923e-02	ci left: 3.041034e-02	ci right 3.323518e-02	k: 1908	n:60000
KS ci ratio: 5.241055e-02	ci left: 8.304378e-02	ci right 8.752976e-02	k: 5116	n:60000
TNNT2   60000 perm   13 sec   (4531 perm/sec)   p_kst 8.526667e-02   p_cons 3.180000e-02   p_joint 2.301667e-02

Joint ci ratio: 9.402520e-02	ci left: 2.308819e-02	ci right 2.538005e-02	k: 1695	n:70000
Cons ci ratio: 8.203882e-02	ci left: 3.028840e-02	ci right 3.289347e-02	k: 2210	n:70000
KS ci ratio: 4.843341e-02	ci left: 8.349513e-02	ci right 8.765358e-02	k: 5989	n:70000
TNNT2   70000 perm   16 sec   (4422 perm/sec)   p_kst 8.555714e-02   p_cons 3.157143e-02   p_joint 2.421429e-02

Outputting figure to mutsig2_images.part000000000179/TNNT2.3_979_70000_0.085557_0.031571_0.024214.png
                gene_name: TNNT2
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.030 
     ci_cons_bounds_right: 0.033 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 71 percent done.
TMPRSS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.230335e-03	ci left: 9.798420e-01	ci right 9.850715e-01	k: 9826	n:10000
Cons ci ratio: 8.838341e-03	ci left: 9.473144e-01	ci right 9.558201e-01	k: 9517	n:10000
KS ci ratio: 3.594278e-02	ci left: 5.333754e-01	ci right 5.529994e-01	k: 5432	n:10000
TMPRSS2   10000 perm   2 sec   (6061 perm/sec)   p_kst 5.432000e-01   p_cons 9.517000e-01   p_joint 9.826000e-01

Outputting figure to mutsig2_images.part000000000179/TMPRSS2.2_1646_10000_0.5432_0.9517_0.9826.png
                gene_name: TMPRSS2
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 73 percent done.
TMPRSS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.306326e-02	ci left: 8.940557e-01	ci right 9.059101e-01	k: 9001	n:10000
Cons ci ratio: 6.886859e-02	ci left: 2.362004e-01	ci right 2.531486e-01	k: 2446	n:10000
KS ci ratio: 3.671421e-03	ci left: 9.893898e-01	ci right 9.931155e-01	k: 9914	n:10000
TMPRSS3   10000 perm   2 sec   (5954 perm/sec)   p_kst 9.914000e-01   p_cons 2.446000e-01   p_joint 9.001000e-01

Outputting figure to mutsig2_images.part000000000179/TMPRSS3.2_1496_10000_0.9914_0.2446_0.9001.png
                gene_name: TMPRSS3
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.91 

Current progress: 75 percent done.
TMPRSS4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.066901e-02	ci left: 9.259590e-01	ci right 9.359882e-01	k: 9311	n:10000
Cons ci ratio: 3.752127e-02	ci left: 5.119543e-01	ci right 5.316330e-01	k: 5218	n:10000
KS ci ratio: 3.334015e-02	ci left: 5.704549e-01	ci right 5.898984e-01	k: 5802	n:10000
TMPRSS4   10000 perm   2 sec   (5987 perm/sec)   p_kst 5.802000e-01   p_cons 5.218000e-01   p_joint 9.311000e-01

Outputting figure to mutsig2_images.part000000000179/TMPRSS4.2_1366_10000_0.5802_0.5218_0.9311.png
                gene_name: TMPRSS4
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 77 percent done.
TMPRSS5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.540616e-01	ci left: 5.609849e-02	ci right 6.555935e-02	k: 607	n:10000
Cons ci ratio: 7.974606e-02	ci left: 1.867820e-01	ci right 2.023963e-01	k: 1945	n:10000
KS ci ratio: 1.680497e-01	ci left: 4.724933e-02	ci right 5.601420e-02	k: 515	n:10000
TMPRSS5   10000 perm   2 sec   (5886 perm/sec)   p_kst 5.150000e-02   p_cons 1.945000e-01   p_joint 6.070000e-02

Joint ci ratio: 6.536829e-02	ci left: 1.473954e-01	ci right 1.574059e-01	k: 3047	n:20000
Cons ci ratio: 5.688011e-02	ci left: 1.864130e-01	ci right 1.973767e-01	k: 3837	n:20000
KS ci ratio: 1.185896e-01	ci left: 4.872026e-02	ci right 5.491086e-02	k: 1035	n:20000
TMPRSS5   20000 perm   4 sec   (5087 perm/sec)   p_kst 5.175000e-02   p_cons 1.918500e-01   p_joint 1.523500e-01

Joint ci ratio: 4.885757e-02	ci left: 1.723327e-01	ci right 1.809966e-01	k: 5299	n:30000
Cons ci ratio: 4.642266e-02	ci left: 1.875563e-01	ci right 1.965034e-01	k: 5760	n:30000
KS ci ratio: 9.719201e-02	ci left: 4.892819e-02	ci right 5.395913e-02	k: 1542	n:30000
TMPRSS5   30000 perm   6 sec   (4717 perm/sec)   p_kst 5.140000e-02   p_cons 1.920000e-01   p_joint 1.766333e-01

Outputting figure to mutsig2_images.part000000000179/TMPRSS5.2_1426_30000_0.0514_0.192_0.17663.png
                gene_name: TMPRSS5
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 79 percent done.
TMPRSS6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.979647e-02	ci left: 7.887776e-01	ci right 8.046492e-01	k: 7968	n:10000
KS ci ratio: 1.988809e-02	ci left: 7.872564e-01	ci right 8.031712e-01	k: 7953	n:10000
TMPRSS6   10000 perm   2 sec   (5398 perm/sec)   p_kst 7.953000e-01   p_cons 7.968000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TMPRSS6.2_2508_10000_0.7953_0.7968_1.png
                gene_name: TMPRSS6
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
TMX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
Cons ci ratio: 6.714328e-02	ci left: 2.455898e-01	ci right 2.627536e-01	k: 2541	n:10000
KS ci ratio: 2.268173e-01	ci left: 2.570435e-02	ci right 3.237377e-02	k: 289	n:10000
TMX1   10000 perm   2 sec   (6243 perm/sec)   p_kst 2.890000e-02   p_cons 2.541000e-01   p_joint 1.390000e-02

Joint ci ratio: 1.483095e-01	ci left: 3.124203e-02	ci right 3.629470e-02	k: 674	n:20000
Cons ci ratio: 4.776758e-02	ci left: 2.458455e-01	ci right 2.579267e-01	k: 5037	n:20000
KS ci ratio: 1.622704e-01	ci left: 2.604555e-02	ci right 3.069292e-02	k: 566	n:20000
TMX1   20000 perm   4 sec   (5551 perm/sec)   p_kst 2.830000e-02   p_cons 2.518500e-01   p_joint 3.370000e-02

Joint ci ratio: 1.113082e-01	ci left: 3.748611e-02	ci right 4.193693e-02	k: 1190	n:30000
Cons ci ratio: 3.904707e-02	ci left: 2.465317e-01	ci right 2.563832e-01	k: 7543	n:30000
KS ci ratio: 1.335894e-01	ci left: 2.603335e-02	ci right 2.979216e-02	k: 836	n:30000
TMX1   30000 perm   6 sec   (5276 perm/sec)   p_kst 2.786667e-02   p_cons 2.514333e-01   p_joint 3.966667e-02

Joint ci ratio: 5.176166e-02	ci left: 1.221446e-01	ci right 1.286599e-01	k: 5015	n:40000
Cons ci ratio: 3.377916e-02	ci left: 2.476018e-01	ci right 2.561343e-01	k: 10074	n:40000
KS ci ratio: 1.174915e-01	ci left: 2.548209e-02	ci right 2.868706e-02	k: 1082	n:40000
TMX1   40000 perm   8 sec   (5073 perm/sec)   p_kst 2.705000e-02   p_cons 2.518500e-01   p_joint 1.253750e-01

Joint ci ratio: 4.630556e-02	ci left: 1.224496e-01	ci right 1.282740e-01	k: 6267	n:50000
Cons ci ratio: 3.024151e-02	ci left: 2.477015e-01	ci right 2.553274e-01	k: 12575	n:50000
KS ci ratio: 1.039393e-01	ci left: 2.622051e-02	ci right 2.911468e-02	k: 1382	n:50000
TMX1   50000 perm   10 sec   (4900 perm/sec)   p_kst 2.764000e-02   p_cons 2.515000e-01   p_joint 1.253400e-01

Joint ci ratio: 6.128584e-02	ci left: 6.187368e-02	ci right 6.580197e-02	k: 3829	n:60000
Cons ci ratio: 2.759464e-02	ci left: 2.481980e-01	ci right 2.551594e-01	k: 15100	n:60000
KS ci ratio: 9.528563e-02	ci left: 2.612463e-02	ci right 2.875468e-02	k: 1645	n:60000
TMX1   60000 perm   13 sec   (4698 perm/sec)   p_kst 2.741667e-02   p_cons 2.516667e-01   p_joint 6.381667e-02

Outputting figure to mutsig2_images.part000000000179/TMX1.2_875_60000_0.027417_0.25167_0.063817.png
                gene_name: TMX1
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.062 
    ci_joint_bounds_right: 0.066 

Current progress: 83 percent done.
TNFAIP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.243869e-02	ci left: 7.446266e-01	ci right 7.616257e-01	k: 7532	n:10000
KS ci ratio: 2.325328e-02	ci left: 7.309807e-01	ci right 7.482795e-01	k: 7397	n:10000
TNFAIP6   10000 perm   2 sec   (6526 perm/sec)   p_kst 7.397000e-01   p_cons 7.532000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNFAIP6.2_858_10000_0.7397_0.7532_1.png
                gene_name: TNFAIP6
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
TNFRSF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.912367e-02	ci left: 6.348262e-01	ci right 6.536897e-01	k: 6443	n:10000
KS ci ratio: 8.525785e-02	ci left: 1.670085e-01	ci right 1.819816e-01	k: 1744	n:10000
TNFRSF17   10000 perm   1 sec   (6853 perm/sec)   p_kst 1.744000e-01   p_cons 6.443000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNFRSF17.2_567_10000_0.1744_0.6443_1.png
                gene_name: TNFRSF17
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
TNFRSF8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.258621e-02	ci left: 9.007276e-01	ci right 9.122343e-01	k: 9066	n:10000
KS ci ratio: 3.048442e-02	ci left: 6.135171e-01	ci right 6.326112e-01	k: 6231	n:10000
TNFRSF8   10000 perm   2 sec   (5463 perm/sec)   p_kst 6.231000e-01   p_cons 9.066000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000179/TNFRSF8.2_1848_10000_0.6231_0.9066_1.png
                gene_name: TNFRSF8
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
TNFSF12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.359749e-02	ci left: 7.252223e-01	ci right 7.426412e-01	k: 7340	n:10000
Cons ci ratio: 3.636482e-02	ci left: 5.275679e-01	ci right 5.472103e-01	k: 5374	n:10000
KS ci ratio: 4.466723e-02	ci left: 4.252535e-01	ci right 4.447844e-01	k: 4350	n:10000
TNFSF12   10000 perm   2 sec   (6658 perm/sec)   p_kst 4.350000e-01   p_cons 5.374000e-01   p_joint 7.340000e-01

Outputting figure to mutsig2_images.part000000000179/TNFSF12.2_778_10000_0.435_0.5374_0.734.png
                gene_name: TNFSF12
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 92 percent done.
TNFSF13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.045244e-01	ci left: 4.494298e-03	ci right 7.604055e-03	k: 59	n:10000
Cons ci ratio: 1.002993e-01	ci left: 1.258149e-01	ci right 1.391999e-01	k: 1324	n:10000
KS ci ratio: 9.498839e-01	ci left: 9.148061e-04	ci right 2.597003e-03	k: 16	n:10000
TNFSF13   10000 perm   2 sec   (6425 perm/sec)   p_kst 1.600000e-03   p_cons 1.324000e-01   p_joint 5.900000e-03

Joint ci ratio: 3.277811e-01	ci left: 5.937561e-03	ci right 8.309133e-03	k: 141	n:20000
Cons ci ratio: 6.980422e-02	ci left: 1.314252e-01	ci right 1.409808e-01	k: 2723	n:20000
KS ci ratio: 6.716860e-01	ci left: 1.136048e-03	ci right 2.316440e-03	k: 33	n:20000
TNFSF13   20000 perm   4 sec   (5326 perm/sec)   p_kst 1.650000e-03   p_cons 1.361500e-01   p_joint 7.050000e-03

Joint ci ratio: 2.633112e-01	ci left: 6.367997e-03	ci right 8.329228e-03	k: 219	n:30000
Cons ci ratio: 5.639746e-02	ci left: 1.347744e-01	ci right 1.426291e-01	k: 4160	n:30000
KS ci ratio: 5.539003e-01	ci left: 1.208586e-03	ci right 2.158785e-03	k: 49	n:30000
TNFSF13   30000 perm   6 sec   (5047 perm/sec)   p_kst 1.633333e-03   p_cons 1.386667e-01   p_joint 7.300000e-03

Joint ci ratio: 1.326984e-01	ci left: 1.993160e-02	ci right 2.278848e-02	k: 853	n:40000
Cons ci ratio: 4.626751e-02	ci left: 1.486183e-01	ci right 1.556823e-01	k: 6085	n:40000
KS ci ratio: 4.934784e-01	ci left: 1.188576e-03	ci right 1.986596e-03	k: 62	n:40000
TNFSF13   40000 perm   8 sec   (4907 perm/sec)   p_kst 1.550000e-03   p_cons 1.521250e-01   p_joint 2.132500e-02

Joint ci ratio: 1.356798e-01	ci left: 1.530489e-02	ci right 1.755176e-02	k: 820	n:50000
Cons ci ratio: 4.133333e-02	ci left: 1.492996e-01	ci right 1.556208e-01	k: 7622	n:50000
KS ci ratio: 4.435018e-01	ci left: 1.215529e-03	ci right 1.924365e-03	k: 77	n:50000
TNFSF13   50000 perm   10 sec   (4813 perm/sec)   p_kst 1.540000e-03   p_cons 1.524400e-01   p_joint 1.640000e-02

Joint ci ratio: 1.504801e-01	ci left: 1.034124e-02	ci right 1.203987e-02	k: 670	n:60000
Cons ci ratio: 3.762436e-02	ci left: 1.503100e-01	ci right 1.560903e-01	k: 9191	n:60000
KS ci ratio: 4.106125e-01	ci left: 1.206344e-03	ci right 1.843438e-03	k: 90	n:60000
TNFSF13   60000 perm   13 sec   (4713 perm/sec)   p_kst 1.500000e-03   p_cons 1.531833e-01   p_joint 1.116667e-02

Joint ci ratio: 1.230094e-01	ci left: 1.341967e-02	ci right 1.519235e-02	k: 1000	n:70000
Cons ci ratio: 3.482192e-02	ci left: 1.506100e-01	ci right 1.559616e-01	k: 10729	n:70000
KS ci ratio: 3.878522e-01	ci left: 1.175380e-03	ci right 1.752930e-03	k: 101	n:70000
TNFSF13   70000 perm   15 sec   (4632 perm/sec)   p_kst 1.442857e-03   p_cons 1.532714e-01   p_joint 1.428571e-02

Joint ci ratio: 1.303690e-01	ci left: 1.044599e-02	ci right 1.191478e-02	k: 893	n:80000
Cons ci ratio: 3.438731e-02	ci left: 1.373294e-01	ci right 1.421468e-01	k: 11178	n:80000
KS ci ratio: 3.752097e-01	ci left: 1.107559e-03	ci right 1.629681e-03	k: 108	n:80000
TNFSF13   80000 perm   18 sec   (4548 perm/sec)   p_kst 1.350000e-03   p_cons 1.397250e-01   p_joint 1.116250e-02

Joint ci ratio: 1.149543e-01	ci left: 1.202180e-02	ci right 1.349874e-02	k: 1147	n:90000
Cons ci ratio: 3.238683e-02	ci left: 1.377171e-01	ci right 1.422617e-01	k: 12598	n:90000
KS ci ratio: 3.561220e-01	ci left: 1.105586e-03	ci right 1.594132e-03	k: 120	n:90000
TNFSF13   90000 perm   20 sec   (4439 perm/sec)   p_kst 1.333333e-03   p_cons 1.399778e-01   p_joint 1.274444e-02

Joint ci ratio: 1.153339e-01	ci left: 1.076094e-02	ci right 1.208763e-02	k: 1141	n:100000
Cons ci ratio: 3.072982e-02	ci left: 1.377952e-01	ci right 1.421057e-01	k: 13994	n:100000
KS ci ratio: 3.435815e-01	ci left: 1.077118e-03	ci right 1.532600e-03	k: 129	n:100000
TNFSF13   100000 perm   23 sec   (4365 perm/sec)   p_kst 1.290000e-03   p_cons 1.399400e-01   p_joint 1.141000e-02

Joint ci ratio: 1.048584e-01	ci left: 1.188719e-02	ci right 1.321142e-02	k: 1379	n:110000
Cons ci ratio: 2.929698e-02	ci left: 1.379183e-01	ci right 1.420280e-01	k: 15396	n:110000
KS ci ratio: 3.346981e-01	ci left: 1.037412e-03	ci right 1.462314e-03	k: 136	n:110000
TNFSF13   110000 perm   26 sec   (4277 perm/sec)   p_kst 1.236364e-03   p_cons 1.399636e-01   p_joint 1.253636e-02

Joint ci ratio: 1.075050e-01	ci left: 1.036887e-02	ci right 1.155494e-02	k: 1314	n:120000
Cons ci ratio: 2.803782e-02	ci left: 1.381076e-01	ci right 1.420431e-01	k: 16808	n:120000
KS ci ratio: 3.209381e-01	ci left: 1.042735e-03	ci right 1.448653e-03	k: 148	n:120000
TNFSF13   120000 perm   28 sec   (4213 perm/sec)   p_kst 1.233333e-03   p_cons 1.400667e-01   p_joint 1.095000e-02

Joint ci ratio: 1.080500e-01	ci left: 9.481206e-03	ci right 1.057159e-02	k: 1302	n:130000
Cons ci ratio: 2.696952e-02	ci left: 1.379038e-01	ci right 1.416815e-01	k: 18172	n:130000
KS ci ratio: 3.097113e-01	ci left: 1.040446e-03	ci right 1.428507e-03	k: 159	n:130000
TNFSF13   130000 perm   31 sec   (4145 perm/sec)   p_kst 1.223077e-03   p_cons 1.397846e-01   p_joint 1.001538e-02

Joint ci ratio: 1.178348e-01	ci left: 7.380494e-03	ci right 8.311492e-03	k: 1097	n:140000
Cons ci ratio: 2.473048e-02	ci left: 1.502723e-01	ci right 1.540422e-01	k: 21301	n:140000
KS ci ratio: 2.944579e-01	ci left: 1.078363e-03	ci right 1.457065e-03	k: 176	n:140000
TNFSF13   140000 perm   34 sec   (4083 perm/sec)   p_kst 1.257143e-03   p_cons 1.521500e-01   p_joint 7.835714e-03

Joint ci ratio: 1.089698e-01	ci left: 8.087012e-03	ci right 9.025466e-03	k: 1282	n:150000
Cons ci ratio: 2.390834e-02	ci left: 1.501600e-01	ci right 1.538001e-01	k: 22796	n:150000
KS ci ratio: 2.857152e-01	ci left: 1.074471e-03	ci right 1.438581e-03	k: 187	n:150000
TNFSF13   150000 perm   37 sec   (4022 perm/sec)   p_kst 1.246667e-03   p_cons 1.519733e-01   p_joint 8.546667e-03

Joint ci ratio: 1.062772e-01	ci left: 7.982947e-03	ci right 8.885002e-03	k: 1348	n:160000
Cons ci ratio: 2.316364e-02	ci left: 1.500574e-01	ci right 1.535802e-01	k: 24290	n:160000
KS ci ratio: 2.763209e-01	ci left: 1.082843e-03	ci right 1.435629e-03	k: 200	n:160000
TNFSF13   160000 perm   41 sec   (3935 perm/sec)   p_kst 1.250000e-03   p_cons 1.518125e-01   p_joint 8.425000e-03

Joint ci ratio: 1.085995e-01	ci left: 7.192641e-03	ci right 8.024283e-03	k: 1292	n:170000
Cons ci ratio: 2.246597e-02	ci left: 1.501793e-01	ci right 1.535973e-01	k: 25820	n:170000
KS ci ratio: 2.677962e-01	ci left: 1.090402e-03	ci right 1.432853e-03	k: 213	n:170000
TNFSF13   170000 perm   44 sec   (3871 perm/sec)   p_kst 1.252941e-03   p_cons 1.518824e-01   p_joint 7.600000e-03

Joint ci ratio: 1.027430e-01	ci left: 7.609862e-03	ci right 8.439434e-03	k: 1443	n:180000
Cons ci ratio: 2.184756e-02	ci left: 1.500567e-01	ci right 1.533768e-01	k: 27308	n:180000
KS ci ratio: 2.617523e-01	ci left: 1.081692e-03	ci right 1.412485e-03	k: 223	n:180000
TNFSF13   180000 perm   47 sec   (3815 perm/sec)   p_kst 1.238889e-03   p_cons 1.517111e-01   p_joint 8.016667e-03

Joint ci ratio: 1.142486e-01	ci left: 5.805941e-03	ci right 6.514516e-03	k: 1169	n:190000
Cons ci ratio: 2.234487e-02	ci left: 1.378402e-01	ci right 1.409603e-01	k: 26485	n:190000
KS ci ratio: 2.550111e-01	ci left: 1.083830e-03	ci right 1.405383e-03	k: 235	n:190000
TNFSF13   190000 perm   51 sec   (3740 perm/sec)   p_kst 1.236842e-03   p_cons 1.393947e-01   p_joint 6.152632e-03

Joint ci ratio: 1.018998e-01	ci left: 6.970560e-03	ci right 7.723825e-03	k: 1468	n:200000
Cons ci ratio: 2.072615e-02	ci left: 1.501453e-01	ci right 1.532948e-01	k: 30343	n:200000
KS ci ratio: 2.462917e-01	ci left: 1.109302e-03	ci right 1.425438e-03	k: 252	n:200000
TNFSF13   200000 perm   54 sec   (3681 perm/sec)   p_kst 1.260000e-03   p_cons 1.517150e-01   p_joint 7.340000e-03

Joint ci ratio: 1.008178e-01	ci left: 6.787114e-03	ci right 7.512305e-03	k: 1500	n:210000
Cons ci ratio: 2.024771e-02	ci left: 1.499168e-01	ci right 1.529880e-01	k: 31804	n:210000
KS ci ratio: 2.406511e-01	ci left: 1.110135e-03	ci right 1.418182e-03	k: 264	n:210000
TNFSF13   210000 perm   58 sec   (3607 perm/sec)   p_kst 1.257143e-03   p_cons 1.514476e-01   p_joint 7.142857e-03

Joint ci ratio: 9.895964e-02	ci left: 6.731217e-03	ci right 7.436409e-03	k: 1557	n:220000
Cons ci ratio: 1.974397e-02	ci left: 1.504478e-01	ci right 1.534523e-01	k: 33428	n:220000
KS ci ratio: 2.332824e-01	ci left: 1.132362e-03	ci right 1.435568e-03	k: 281	n:220000
TNFSF13   220000 perm   62 sec   (3547 perm/sec)   p_kst 1.277273e-03   p_cons 1.519455e-01   p_joint 7.077273e-03

Joint ci ratio: 9.680894e-02	ci left: 6.735453e-03	ci right 7.424883e-03	k: 1627	n:230000
Cons ci ratio: 1.932808e-02	ci left: 1.502405e-01	ci right 1.531770e-01	k: 34892	n:230000
KS ci ratio: 2.276982e-01	ci left: 1.140485e-03	ci right 1.437530e-03	k: 295	n:230000
TNFSF13   230000 perm   66 sec   (3498 perm/sec)   p_kst 1.282609e-03   p_cons 1.517043e-01   p_joint 7.073913e-03

Joint ci ratio: 8.893931e-02	ci left: 7.671911e-03	ci right 8.390046e-03	k: 1926	n:240000
Cons ci ratio: 1.893741e-02	ci left: 1.500511e-01	ci right 1.529240e-01	k: 36356	n:240000
KS ci ratio: 2.232189e-01	ci left: 1.140141e-03	ci right 1.430452e-03	k: 307	n:240000
TNFSF13   240000 perm   70 sec   (3450 perm/sec)   p_kst 1.279167e-03   p_cons 1.514833e-01   p_joint 8.025000e-03

Joint ci ratio: 8.710502e-02	ci left: 7.685817e-03	ci right 8.389660e-03	k: 2008	n:250000
Cons ci ratio: 1.856401e-02	ci left: 1.499532e-01	ci right 1.527669e-01	k: 37839	n:250000
KS ci ratio: 2.189939e-01	ci left: 1.139877e-03	ci right 1.423888e-03	k: 319	n:250000
TNFSF13   250000 perm   74 sec   (3395 perm/sec)   p_kst 1.276000e-03   p_cons 1.513560e-01   p_joint 8.032000e-03

Joint ci ratio: 8.558629e-02	ci left: 7.661148e-03	ci right 8.349888e-03	k: 2080	n:260000
Cons ci ratio: 1.819441e-02	ci left: 1.501085e-01	ci right 1.528685e-01	k: 39386	n:260000
KS ci ratio: 2.140340e-01	ci left: 1.150601e-03	ci right 1.429937e-03	k: 334	n:260000
TNFSF13   260000 perm   78 sec   (3346 perm/sec)   p_kst 1.284615e-03   p_cons 1.514846e-01   p_joint 8.000000e-03

Joint ci ratio: 8.412462e-02	ci left: 7.642031e-03	ci right 8.316743e-03	k: 2153	n:270000
Cons ci ratio: 1.785581e-02	ci left: 1.501126e-01	ci right 1.528208e-01	k: 40895	n:270000
KS ci ratio: 2.106050e-01	ci left: 1.146560e-03	ci right 1.419881e-03	k: 345	n:270000
TNFSF13   270000 perm   82 sec   (3302 perm/sec)   p_kst 1.277778e-03   p_cons 1.514630e-01   p_joint 7.974074e-03

Joint ci ratio: 8.282915e-02	ci left: 7.606883e-03	ci right 8.267649e-03	k: 2221	n:280000
Cons ci ratio: 1.755740e-02	ci left: 1.497966e-01	ci right 1.524535e-01	k: 42314	n:280000
KS ci ratio: 2.070456e-01	ci left: 1.146228e-03	ci right 1.414266e-03	k: 357	n:280000
TNFSF13   280000 perm   86 sec   (3261 perm/sec)   p_kst 1.275000e-03   p_cons 1.511214e-01   p_joint 7.932143e-03

Joint ci ratio: 8.397140e-02	ci left: 7.145300e-03	ci right 7.774948e-03	k: 2162	n:290000
Cons ci ratio: 1.724954e-02	ci left: 1.498567e-01	ci right 1.524675e-01	k: 43836	n:290000
KS ci ratio: 2.039368e-01	ci left: 1.142682e-03	ci right 1.405379e-03	k: 368	n:290000
TNFSF13   290000 perm   90 sec   (3219 perm/sec)   p_kst 1.268966e-03   p_cons 1.511586e-01   p_joint 7.455172e-03

Joint ci ratio: 8.370948e-02	ci left: 6.952783e-03	ci right 7.563461e-03	k: 2176	n:300000
Cons ci ratio: 1.696107e-02	ci left: 1.498567e-01	ci right 1.524234e-01	k: 45341	n:300000
KS ci ratio: 2.012293e-01	ci left: 1.136234e-03	ci right 1.393555e-03	k: 378	n:300000
TNFSF13   300000 perm   94 sec   (3175 perm/sec)   p_kst 1.260000e-03   p_cons 1.511367e-01   p_joint 7.253333e-03

Joint ci ratio: 8.730463e-02	ci left: 6.179098e-03	ci right 6.746317e-03	k: 2002	n:310000
Cons ci ratio: 1.668514e-02	ci left: 1.498795e-01	ci right 1.524045e-01	k: 46853	n:310000
KS ci ratio: 1.978644e-01	ci left: 1.139422e-03	ci right 1.392630e-03	k: 391	n:310000
TNFSF13   310000 perm   99 sec   (3128 perm/sec)   p_kst 1.261290e-03   p_cons 1.511387e-01   p_joint 6.458065e-03

Joint ci ratio: 8.012054e-02	ci left: 7.127400e-03	ci right 7.725323e-03	k: 2375	n:320000
Cons ci ratio: 1.642425e-02	ci left: 1.498701e-01	ci right 1.523550e-01	k: 48355	n:320000
KS ci ratio: 1.949038e-01	ci left: 1.139471e-03	ci right 1.388452e-03	k: 403	n:320000
TNFSF13   320000 perm   104 sec   (3076 perm/sec)   p_kst 1.259375e-03   p_cons 1.511094e-01   p_joint 7.421875e-03

Joint ci ratio: 8.416647e-02	ci left: 6.255350e-03	ci right 6.807915e-03	k: 2154	n:330000
Cons ci ratio: 1.617274e-02	ci left: 1.499007e-01	ci right 1.523478e-01	k: 49870	n:330000
KS ci ratio: 1.916117e-01	ci left: 1.145314e-03	ci right 1.390851e-03	k: 417	n:330000
TNFSF13   330000 perm   109 sec   (3037 perm/sec)   p_kst 1.263636e-03   p_cons 1.511212e-01   p_joint 6.527273e-03

Joint ci ratio: 8.185568e-02	ci left: 6.425647e-03	ci right 6.976929e-03	k: 2277	n:340000
Cons ci ratio: 1.593190e-02	ci left: 1.499387e-01	ci right 1.523496e-01	k: 51388	n:340000
KS ci ratio: 1.882629e-01	ci left: 1.153649e-03	ci right 1.396156e-03	k: 432	n:340000
TNFSF13   340000 perm   114 sec   (2974 perm/sec)   p_kst 1.270588e-03   p_cons 1.511412e-01   p_joint 6.697059e-03

Joint ci ratio: 7.560159e-02	ci left: 7.334562e-03	ci right 7.913635e-03	k: 2667	n:350000
Cons ci ratio: 1.570938e-02	ci left: 1.498466e-01	ci right 1.522220e-01	k: 52861	n:350000
KS ci ratio: 1.861267e-01	ci left: 1.147920e-03	ci right 1.386175e-03	k: 442	n:350000
TNFSF13   350000 perm   119 sec   (2937 perm/sec)   p_kst 1.262857e-03   p_cons 1.510314e-01   p_joint 7.620000e-03

Joint ci ratio: 7.469832e-02	ci left: 7.307983e-03	ci right 7.877764e-03	k: 2732	n:360000
Cons ci ratio: 1.550382e-02	ci left: 1.496297e-01	ci right 1.519704e-01	k: 54287	n:360000
KS ci ratio: 1.826539e-01	ci left: 1.161076e-03	ci right 1.397069e-03	k: 459	n:360000
TNFSF13   360000 perm   124 sec   (2903 perm/sec)   p_kst 1.275000e-03   p_cons 1.507972e-01   p_joint 7.588889e-03

Joint ci ratio: 7.837165e-02	ci left: 6.452908e-03	ci right 6.981889e-03	k: 2484	n:370000
Cons ci ratio: 1.529046e-02	ci left: 1.496860e-01	ci right 1.519951e-01	k: 55810	n:370000
KS ci ratio: 1.782495e-01	ci left: 1.189052e-03	ci right 1.424275e-03	k: 482	n:370000
TNFSF13   370000 perm   129 sec   (2870 perm/sec)   p_kst 1.302703e-03   p_cons 1.508378e-01   p_joint 6.713514e-03

Joint ci ratio: 7.750438e-02	ci left: 6.427587e-03	ci right 6.948399e-03	k: 2540	n:380000
Cons ci ratio: 1.509590e-02	ci left: 1.495665e-01	ci right 1.518441e-01	k: 57267	n:380000
KS ci ratio: 1.766126e-01	ci left: 1.180393e-03	ci right 1.411530e-03	k: 491	n:380000
TNFSF13   380000 perm   134 sec   (2833 perm/sec)   p_kst 1.292105e-03   p_cons 1.507026e-01   p_joint 6.684211e-03

Joint ci ratio: 7.752643e-02	ci left: 6.260242e-03	ci right 6.767645e-03	k: 2539	n:390000
Cons ci ratio: 1.490156e-02	ci left: 1.495734e-01	ci right 1.518215e-01	k: 58771	n:390000
KS ci ratio: 1.744976e-01	ci left: 1.179544e-03	ci right 1.407457e-03	k: 503	n:390000
TNFSF13   390000 perm   139 sec   (2798 perm/sec)   p_kst 1.289744e-03   p_cons 1.506949e-01   p_joint 6.510256e-03

Joint ci ratio: 7.552398e-02	ci left: 6.437252e-03	ci right 6.944934e-03	k: 2675	n:400000
Cons ci ratio: 1.471066e-02	ci left: 1.496474e-01	ci right 1.518676e-01	k: 60302	n:400000
KS ci ratio: 1.732996e-01	ci left: 1.166793e-03	ci right 1.390532e-03	k: 510	n:400000
TNFSF13   400000 perm   145 sec   (2767 perm/sec)   p_kst 1.275000e-03   p_cons 1.507550e-01   p_joint 6.687500e-03

Joint ci ratio: 7.476071e-02	ci left: 6.411868e-03	ci right 6.912215e-03	k: 2730	n:410000
Cons ci ratio: 1.453910e-02	ci left: 1.495040e-01	ci right 1.516960e-01	k: 61745	n:410000
KS ci ratio: 1.713001e-01	ci left: 1.166341e-03	ci right 1.387146e-03	k: 522	n:410000
TNFSF13   410000 perm   150 sec   (2737 perm/sec)   p_kst 1.273171e-03   p_cons 1.505976e-01   p_joint 6.658537e-03

Joint ci ratio: 7.392669e-02	ci left: 6.404079e-03	ci right 6.898003e-03	k: 2792	n:420000
Cons ci ratio: 1.437367e-02	ci left: 1.493629e-01	ci right 1.515277e-01	k: 63186	n:420000
KS ci ratio: 1.693682e-01	ci left: 1.165924e-03	ci right 1.383907e-03	k: 534	n:420000
TNFSF13   420000 perm   155 sec   (2706 perm/sec)   p_kst 1.271429e-03   p_cons 1.504429e-01   p_joint 6.647619e-03

Joint ci ratio: 7.308132e-02	ci left: 6.403531e-03	ci right 6.891525e-03	k: 2857	n:430000
Cons ci ratio: 1.420406e-02	ci left: 1.494023e-01	ci right 1.515419e-01	k: 64702	n:430000
KS ci ratio: 1.673472e-01	ci left: 1.167768e-03	ci right 1.383228e-03	k: 547	n:430000
TNFSF13   430000 perm   161 sec   (2676 perm/sec)   p_kst 1.272093e-03   p_cons 1.504698e-01   p_joint 6.644186e-03

Joint ci ratio: 7.897507e-02	ci left: 5.348208e-03	ci right 5.790159e-03	k: 2449	n:440000
Cons ci ratio: 1.404893e-02	ci left: 1.492838e-01	ci right 1.513981e-01	k: 66149	n:440000
KS ci ratio: 1.655446e-01	ci left: 1.167365e-03	ci right 1.380199e-03	k: 559	n:440000
TNFSF13   440000 perm   166 sec   (2648 perm/sec)   p_kst 1.270455e-03   p_cons 1.503386e-01   p_joint 5.565909e-03

Joint ci ratio: 7.793145e-02	ci left: 5.373151e-03	ci right 5.811030e-03	k: 2515	n:450000
Cons ci ratio: 1.389901e-02	ci left: 1.491662e-01	ci right 1.512561e-01	k: 67594	n:450000
KS ci ratio: 1.642308e-01	ci left: 1.160598e-03	ci right 1.370353e-03	k: 568	n:450000
TNFSF13   450000 perm   172 sec   (2617 perm/sec)   p_kst 1.262222e-03   p_cons 1.502089e-01   p_joint 5.588889e-03

Joint ci ratio: 7.813946e-02	ci left: 5.228619e-03	ci right 5.655908e-03	k: 2502	n:460000
Cons ci ratio: 1.374665e-02	ci left: 1.491860e-01	ci right 1.512532e-01	k: 69100	n:460000
KS ci ratio: 1.614172e-01	ci left: 1.177075e-03	ci right 1.385810e-03	k: 588	n:460000
TNFSF13   460000 perm   178 sec   (2588 perm/sec)   p_kst 1.278261e-03   p_cons 1.502174e-01   p_joint 5.439130e-03

Joint ci ratio: 7.743188e-02	ci left: 5.213339e-03	ci right 5.635347e-03	k: 2548	n:470000
Cons ci ratio: 1.360679e-02	ci left: 1.490630e-01	ci right 1.511073e-01	k: 70539	n:470000
KS ci ratio: 1.591363e-01	ci left: 1.186751e-03	ci right 1.393944e-03	k: 605	n:470000
TNFSF13   470000 perm   183 sec   (2562 perm/sec)   p_kst 1.287234e-03   p_cons 1.500830e-01   p_joint 5.421277e-03

Joint ci ratio: 7.660972e-02	ci left: 5.217104e-03	ci right 5.634733e-03	k: 2603	n:480000
Cons ci ratio: 1.346792e-02	ci left: 1.490055e-01	ci right 1.510279e-01	k: 72007	n:480000
KS ci ratio: 1.578398e-01	ci left: 1.182033e-03	ci right 1.386563e-03	k: 615	n:480000
TNFSF13   480000 perm   189 sec   (2537 perm/sec)   p_kst 1.281250e-03   p_cons 1.500146e-01   p_joint 5.422917e-03

Joint ci ratio: 7.581321e-02	ci left: 5.220739e-03	ci right 5.634122e-03	k: 2658	n:490000
Cons ci ratio: 1.333055e-02	ci left: 1.490013e-01	ci right 1.510029e-01	k: 73500	n:490000
KS ci ratio: 1.563246e-01	ci left: 1.181437e-03	ci right 1.383717e-03	k: 627	n:490000
TNFSF13   490000 perm   195 sec   (2512 perm/sec)   p_kst 1.279592e-03   p_cons 1.500000e-01   p_joint 5.424490e-03

Joint ci ratio: 7.505494e-02	ci left: 5.222287e-03	ci right 5.631476e-03	k: 2712	n:500000
Cons ci ratio: 1.319006e-02	ci left: 1.491370e-01	ci right 1.511191e-01	k: 75063	n:500000
KS ci ratio: 1.544901e-01	ci left: 1.186642e-03	ci right 1.387208e-03	k: 642	n:500000
TNFSF13   500000 perm   201 sec   (2488 perm/sec)   p_kst 1.284000e-03   p_cons 1.501260e-01   p_joint 5.424000e-03

Joint ci ratio: 7.441368e-02	ci left: 5.210322e-03	ci right 5.614935e-03	k: 2759	n:510000
Cons ci ratio: 1.305762e-02	ci left: 1.491951e-01	ci right 1.511579e-01	k: 76589	n:510000
KS ci ratio: 1.535387e-01	ci left: 1.178456e-03	ci right 1.376299e-03	k: 650	n:510000
TNFSF13   510000 perm   207 sec   (2462 perm/sec)   p_kst 1.274510e-03   p_cons 1.501745e-01   p_joint 5.409804e-03

Joint ci ratio: 7.373577e-02	ci left: 5.206384e-03	ci right 5.606850e-03	k: 2810	n:520000
Cons ci ratio: 1.292832e-02	ci left: 1.492664e-01	ci right 1.512106e-01	k: 78123	n:520000
KS ci ratio: 1.521430e-01	ci left: 1.177988e-03	ci right 1.373790e-03	k: 662	n:520000
TNFSF13   520000 perm   213 sec   (2437 perm/sec)   p_kst 1.273077e-03   p_cons 1.502365e-01   p_joint 5.403846e-03

Joint ci ratio: 7.292250e-02	ci left: 5.224840e-03	ci right 5.622105e-03	k: 2873	n:530000
Cons ci ratio: 1.280695e-02	ci left: 1.492523e-01	ci right 1.511779e-01	k: 79613	n:530000
KS ci ratio: 1.506729e-01	ci left: 1.179361e-03	ci right 1.373327e-03	k: 675	n:530000
TNFSF13   530000 perm   220 sec   (2413 perm/sec)   p_kst 1.273585e-03   p_cons 1.502132e-01   p_joint 5.420755e-03

Joint ci ratio: 7.223455e-02	ci left: 5.228087e-03	ci right 5.621692e-03	k: 2928	n:540000
Cons ci ratio: 1.268093e-02	ci left: 1.493995e-01	ci right 1.513079e-01	k: 81190	n:540000
KS ci ratio: 1.496803e-01	ci left: 1.173561e-03	ci right 1.365188e-03	k: 684	n:540000
TNFSF13   540000 perm   226 sec   (2390 perm/sec)   p_kst 1.266667e-03   p_cons 1.503519e-01   p_joint 5.422222e-03

Joint ci ratio: 7.149347e-02	ci left: 5.241949e-03	ci right 5.632380e-03	k: 2989	n:550000
Cons ci ratio: 1.256731e-02	ci left: 1.493637e-01	ci right 1.512545e-01	k: 82669	n:550000
KS ci ratio: 1.481736e-01	ci left: 1.176730e-03	ci right 1.366768e-03	k: 698	n:550000
TNFSF13   550000 perm   232 sec   (2367 perm/sec)   p_kst 1.269091e-03   p_cons 1.503073e-01   p_joint 5.434545e-03

Joint ci ratio: 7.095032e-02	ci left: 5.229021e-03	ci right 5.615408e-03	k: 3035	n:560000
Cons ci ratio: 1.245234e-02	ci left: 1.494184e-01	ci right 1.512924e-01	k: 84198	n:560000
KS ci ratio: 1.465059e-01	ci left: 1.183235e-03	ci right 1.371985e-03	k: 714	n:560000
TNFSF13   560000 perm   239 sec   (2345 perm/sec)   p_kst 1.275000e-03   p_cons 1.503536e-01   p_joint 5.419643e-03

Joint ci ratio: 7.049990e-02	ci left: 5.204492e-03	ci right 5.586526e-03	k: 3074	n:570000
Cons ci ratio: 1.234301e-02	ci left: 1.494187e-01	ci right 1.512761e-01	k: 85697	n:570000
KS ci ratio: 1.451919e-01	ci left: 1.184451e-03	ci right 1.371554e-03	k: 727	n:570000
TNFSF13   570000 perm   245 sec   (2323 perm/sec)   p_kst 1.275439e-03   p_cons 1.503456e-01   p_joint 5.392982e-03

Joint ci ratio: 6.968766e-02	ci left: 5.236725e-03	ci right 5.616517e-03	k: 3146	n:580000
Cons ci ratio: 1.224387e-02	ci left: 1.492660e-01	ci right 1.511065e-01	k: 87107	n:580000
KS ci ratio: 1.439127e-01	ci left: 1.185633e-03	ci right 1.371130e-03	k: 740	n:580000
TNFSF13   580000 perm   252 sec   (2302 perm/sec)   p_kst 1.275862e-03   p_cons 1.501845e-01   p_joint 5.424138e-03

Joint ci ratio: 6.906484e-02	ci left: 5.242902e-03	ci right 5.619607e-03	k: 3203	n:590000
Cons ci ratio: 1.213748e-02	ci left: 1.493197e-01	ci right 1.511448e-01	k: 88636	n:590000
KS ci ratio: 1.427614e-01	ci left: 1.185147e-03	ci right 1.368959e-03	k: 752	n:590000
TNFSF13   590000 perm   259 sec   (2280 perm/sec)   p_kst 1.274576e-03   p_cons 1.502305e-01   p_joint 5.428814e-03

Joint ci ratio: 6.843733e-02	ci left: 5.252164e-03	ci right 5.625969e-03	k: 3262	n:600000
Cons ci ratio: 1.203334e-02	ci left: 1.493817e-01	ci right 1.511917e-01	k: 90171	n:600000
KS ci ratio: 1.411762e-01	ci left: 1.192722e-03	ci right 1.375482e-03	k: 769	n:600000
TNFSF13   600000 perm   266 sec   (2257 perm/sec)   p_kst 1.281667e-03   p_cons 1.502850e-01   p_joint 5.436667e-03

Joint ci ratio: 6.797077e-02	ci left: 5.238574e-03	ci right 5.608770e-03	k: 3307	n:610000
Cons ci ratio: 1.193498e-02	ci left: 1.493746e-01	ci right 1.511697e-01	k: 91665	n:610000
KS ci ratio: 1.400889e-01	ci left: 1.192149e-03	ci right 1.373297e-03	k: 781	n:610000
TNFSF13   610000 perm   273 sec   (2234 perm/sec)   p_kst 1.280328e-03   p_cons 1.502705e-01   p_joint 5.421311e-03

Joint ci ratio: 6.738241e-02	ci left: 5.246046e-03	ci right 5.613437e-03	k: 3365	n:620000
Cons ci ratio: 1.183652e-02	ci left: 1.494209e-01	ci right 1.512017e-01	k: 93192	n:620000
KS ci ratio: 1.392901e-01	ci left: 1.186929e-03	ci right 1.366170e-03	k: 790	n:620000
TNFSF13   620000 perm   280 sec   (2212 perm/sec)   p_kst 1.274194e-03   p_cons 1.503097e-01   p_joint 5.427419e-03

Joint ci ratio: 6.679927e-02	ci left: 5.254856e-03	ci right 5.619555e-03	k: 3424	n:630000
Cons ci ratio: 1.174302e-02	ci left: 1.494104e-01	ci right 1.511769e-01	k: 94684	n:630000
KS ci ratio: 1.383318e-01	ci left: 1.184943e-03	ci right 1.362551e-03	k: 801	n:630000
TNFSF13   630000 perm   287 sec   (2192 perm/sec)   p_kst 1.271429e-03   p_cons 1.502921e-01   p_joint 5.434921e-03

Joint ci ratio: 8.371772e-02	ci left: 3.271097e-03	ci right 3.558427e-03	k: 2184	n:640000
Cons ci ratio: 1.165148e-02	ci left: 1.494050e-01	ci right 1.511575e-01	k: 96179	n:640000
KS ci ratio: 1.373084e-01	ci left: 1.184532e-03	ci right 1.360657e-03	k: 813	n:640000
TNFSF13   640000 perm   295 sec   (2170 perm/sec)   p_kst 1.270312e-03   p_cons 1.502797e-01   p_joint 3.412500e-03

Joint ci ratio: 6.562115e-02	ci left: 5.280782e-03	ci right 5.640571e-03	k: 3548	n:650000
Cons ci ratio: 1.155850e-02	ci left: 1.494781e-01	ci right 1.512174e-01	k: 97725	n:650000
KS ci ratio: 1.357328e-01	ci left: 1.194541e-03	ci right 1.369952e-03	k: 832	n:650000
TNFSF13   650000 perm   303 sec   (2149 perm/sec)   p_kst 1.280000e-03   p_cons 1.503462e-01   p_joint 5.458462e-03

Joint ci ratio: 6.505500e-02	ci left: 5.293176e-03	ci right 5.650580e-03	k: 3610	n:660000
Cons ci ratio: 1.147267e-02	ci left: 1.494386e-01	ci right 1.511645e-01	k: 99198	n:660000
KS ci ratio: 1.346859e-01	ci left: 1.195473e-03	ci right 1.369558e-03	k: 845	n:660000
TNFSF13   660000 perm   310 sec   (2129 perm/sec)   p_kst 1.280303e-03   p_cons 1.503000e-01   p_joint 5.469697e-03

Joint ci ratio: 6.485035e-02	ci left: 5.247940e-03	ci right 5.601133e-03	k: 3633	n:670000
Cons ci ratio: 1.138414e-02	ci left: 1.495031e-01	ci right 1.512163e-01	k: 100740	n:670000
KS ci ratio: 1.335073e-01	ci left: 1.199267e-03	ci right 1.372256e-03	k: 860	n:670000
TNFSF13   670000 perm   317 sec   (2110 perm/sec)   p_kst 1.283582e-03   p_cons 1.503582e-01   p_joint 5.422388e-03

Joint ci ratio: 6.408618e-02	ci left: 5.296647e-03	ci right 5.648762e-03	k: 3720	n:680000
Cons ci ratio: 1.130433e-02	ci left: 1.494147e-01	ci right 1.511148e-01	k: 102179	n:680000
KS ci ratio: 1.328153e-01	ci left: 1.194425e-03	ci right 1.365752e-03	k: 869	n:680000
TNFSF13   680000 perm   325 sec   (2091 perm/sec)   p_kst 1.277941e-03   p_cons 1.502632e-01   p_joint 5.470588e-03

Joint ci ratio: 6.364316e-02	ci left: 5.294043e-03	ci right 5.643462e-03	k: 3772	n:690000
Cons ci ratio: 1.122094e-02	ci left: 1.494474e-01	ci right 1.511352e-01	k: 103700	n:690000
KS ci ratio: 1.319088e-01	ci left: 1.193930e-03	ci right 1.363925e-03	k: 881	n:690000
TNFSF13   690000 perm   333 sec   (2073 perm/sec)   p_kst 1.276812e-03   p_cons 1.502899e-01   p_joint 5.466667e-03

Joint ci ratio: 6.321750e-02	ci left: 5.290115e-03	ci right 5.636854e-03	k: 3823	n:700000
Cons ci ratio: 1.113957e-02	ci left: 1.494750e-01	ci right 1.511508e-01	k: 105218	n:700000
KS ci ratio: 1.308741e-01	ci left: 1.196216e-03	ci right 1.365097e-03	k: 895	n:700000
TNFSF13   700000 perm   341 sec   (2056 perm/sec)   p_kst 1.278571e-03   p_cons 1.503114e-01   p_joint 5.461429e-03

Joint ci ratio: 6.265412e-02	ci left: 5.311262e-03	ci right 5.656172e-03	k: 3892	n:710000
Cons ci ratio: 1.106121e-02	ci left: 1.494723e-01	ci right 1.511362e-01	k: 106715	n:710000
KS ci ratio: 1.297920e-01	ci left: 1.199806e-03	ci right 1.367686e-03	k: 910	n:710000
TNFSF13   710000 perm   348 sec   (2038 perm/sec)   p_kst 1.281690e-03   p_cons 1.503028e-01   p_joint 5.481690e-03

Joint ci ratio: 6.223202e-02	ci left: 5.309956e-03	ci right 5.652375e-03	k: 3945	n:720000
Cons ci ratio: 1.098402e-02	ci left: 1.494808e-01	ci right 1.511331e-01	k: 108220	n:720000
KS ci ratio: 1.292262e-01	ci left: 1.193893e-03	ci right 1.360161e-03	k: 918	n:720000
TNFSF13   720000 perm   356 sec   (2022 perm/sec)   p_kst 1.275000e-03   p_cons 1.503056e-01   p_joint 5.479167e-03

Joint ci ratio: 6.184944e-02	ci left: 5.303298e-03	ci right 5.643110e-03	k: 3994	n:730000
Cons ci ratio: 1.091011e-02	ci left: 1.494495e-01	ci right 1.510903e-01	k: 109696	n:730000
KS ci ratio: 1.282529e-01	ci left: 1.196099e-03	ci right 1.361324e-03	k: 932	n:730000
TNFSF13   730000 perm   364 sec   (2005 perm/sec)   p_kst 1.276712e-03   p_cons 1.502685e-01   p_joint 5.471233e-03

Joint ci ratio: 6.178957e-02	ci left: 5.242271e-03	ci right 5.577835e-03	k: 4002	n:740000
Cons ci ratio: 1.083675e-02	ci left: 1.494406e-01	ci right 1.510702e-01	k: 111188	n:740000
KS ci ratio: 1.273686e-01	ci left: 1.196941e-03	ci right 1.361057e-03	k: 945	n:740000
TNFSF13   740000 perm   372 sec   (1988 perm/sec)   p_kst 1.277027e-03   p_cons 1.502541e-01   p_joint 5.408108e-03

Joint ci ratio: 6.103006e-02	ci left: 5.303665e-03	ci right 5.638839e-03	k: 4102	n:750000
Cons ci ratio: 1.076452e-02	ci left: 1.494400e-01	ci right 1.510587e-01	k: 112686	n:750000
KS ci ratio: 1.262390e-01	ci left: 1.202930e-03	ci right 1.366294e-03	k: 962	n:750000
TNFSF13   750000 perm   381 sec   (1971 perm/sec)   p_kst 1.282667e-03   p_cons 1.502480e-01   p_joint 5.469333e-03

Joint ci ratio: 6.095763e-02	ci left: 5.246832e-03	ci right 5.578008e-03	k: 4112	n:760000
Cons ci ratio: 1.069316e-02	ci left: 1.494526e-01	ci right 1.510606e-01	k: 114194	n:760000
KS ci ratio: 1.252670e-01	ci left: 1.206218e-03	ci right 1.368674e-03	k: 977	n:760000
TNFSF13   760000 perm   389 sec   (1955 perm/sec)   p_kst 1.285526e-03   p_cons 1.502553e-01   p_joint 5.410526e-03

Joint ci ratio: 6.061258e-02	ci left: 5.238802e-03	ci right 5.567533e-03	k: 4159	n:770000
Cons ci ratio: 1.062456e-02	ci left: 1.494325e-01	ci right 1.510299e-01	k: 115677	n:770000
KS ci ratio: 1.241295e-01	ci left: 1.213201e-03	ci right 1.375004e-03	k: 995	n:770000
TNFSF13   770000 perm   397 sec   (1939 perm/sec)   p_kst 1.292208e-03   p_cons 1.502299e-01   p_joint 5.401299e-03

Joint ci ratio: 6.015842e-02	ci left: 5.251189e-03	ci right 5.578142e-03	k: 4222	n:780000
Cons ci ratio: 1.055466e-02	ci left: 1.494756e-01	ci right 1.510629e-01	k: 117209	n:780000
KS ci ratio: 1.230832e-01	ci left: 1.218768e-03	ci right 1.379844e-03	k: 1012	n:780000
TNFSF13   780000 perm   406 sec   (1923 perm/sec)   p_kst 1.297436e-03   p_cons 1.502679e-01   p_joint 5.412821e-03

Joint ci ratio: 5.974936e-02	ci left: 5.257035e-03	ci right 5.582050e-03	k: 4280	n:790000
Cons ci ratio: 1.048768e-02	ci left: 1.494798e-01	ci right 1.510570e-01	k: 118711	n:790000
KS ci ratio: 1.221818e-01	ci left: 1.221746e-03	ci right 1.381947e-03	k: 1027	n:790000
TNFSF13   790000 perm   414 sec   (1908 perm/sec)   p_kst 1.300000e-03   p_cons 1.502671e-01   p_joint 5.417722e-03

Joint ci ratio: 5.929360e-02	ci left: 5.272596e-03	ci right 5.596001e-03	k: 4346	n:800000
Cons ci ratio: 1.042140e-02	ci left: 1.494976e-01	ci right 1.510649e-01	k: 120224	n:800000
KS ci ratio: 1.208943e-01	ci left: 1.233138e-03	ci right 1.393008e-03	k: 1049	n:800000
TNFSF13   800000 perm   423 sec   (1892 perm/sec)   p_kst 1.311250e-03   p_cons 1.502800e-01   p_joint 5.432500e-03

Joint ci ratio: 5.895567e-02	ci left: 5.268317e-03	ci right 5.589556e-03	k: 4396	n:810000
Cons ci ratio: 1.035686e-02	ci left: 1.495027e-01	ci right 1.510603e-01	k: 121727	n:810000
KS ci ratio: 1.200398e-01	ci left: 1.235875e-03	ci right 1.394886e-03	k: 1064	n:810000
TNFSF13   810000 perm   431 sec   (1877 perm/sec)   p_kst 1.313580e-03   p_cons 1.502802e-01   p_joint 5.427160e-03

Joint ci ratio: 5.864335e-02	ci left: 5.260543e-03	ci right 5.579551e-03	k: 4443	n:820000
Cons ci ratio: 1.029425e-02	ci left: 1.494894e-01	ci right 1.510374e-01	k: 123215	n:820000
KS ci ratio: 1.190377e-01	ci left: 1.242098e-03	ci right 1.400483e-03	k: 1082	n:820000
TNFSF13   820000 perm   440 sec   (1862 perm/sec)   p_kst 1.319512e-03   p_cons 1.502622e-01   p_joint 5.418293e-03

Joint ci ratio: 5.826423e-02	ci left: 5.266022e-03	ci right 5.583228e-03	k: 4501	n:830000
Cons ci ratio: 1.023488e-02	ci left: 1.494236e-01	ci right 1.509620e-01	k: 124659	n:830000
KS ci ratio: 1.181140e-01	ci left: 1.247008e-03	ci right 1.404698e-03	k: 1099	n:830000
TNFSF13   830000 perm   449 sec   (1847 perm/sec)   p_kst 1.324096e-03   p_cons 1.501916e-01   p_joint 5.422892e-03

Joint ci ratio: 5.793071e-02	ci left: 5.264337e-03	ci right 5.579565e-03	k: 4553	n:840000
Cons ci ratio: 1.017685e-02	ci left: 1.493511e-01	ci right 1.508799e-01	k: 126096	n:840000
KS ci ratio: 1.173167e-01	ci left: 1.249494e-03	ci right 1.406358e-03	k: 1114	n:840000
TNFSF13   840000 perm   458 sec   (1833 perm/sec)   p_kst 1.326190e-03   p_cons 1.501143e-01   p_joint 5.420238e-03

Joint ci ratio: 5.764691e-02	ci left: 5.254579e-03	ci right 5.567630e-03	k: 4598	n:850000
Cons ci ratio: 1.011925e-02	ci left: 1.492943e-01	ci right 1.508139e-01	k: 127545	n:850000
KS ci ratio: 1.165870e-01	ci left: 1.250783e-03	ci right 1.406765e-03	k: 1128	n:850000
TNFSF13   850000 perm   467 sec   (1819 perm/sec)   p_kst 1.327059e-03   p_cons 1.500529e-01   p_joint 5.409412e-03

Joint ci ratio: 5.728049e-02	ci left: 5.261098e-03	ci right 5.572480e-03	k: 4657	n:860000
Cons ci ratio: 1.006403e-02	ci left: 1.492030e-01	ci right 1.507133e-01	k: 128963	n:860000
KS ci ratio: 1.154669e-01	ci left: 1.261078e-03	ci right 1.416730e-03	k: 1150	n:860000
TNFSF13   860000 perm   476 sec   (1805 perm/sec)   p_kst 1.337209e-03   p_cons 1.499570e-01   p_joint 5.415116e-03

Joint ci ratio: 5.699391e-02	ci left: 5.253877e-03	ci right 5.563224e-03	k: 4704	n:870000
Cons ci ratio: 1.000699e-02	ci left: 1.491826e-01	ci right 1.506841e-01	k: 130441	n:870000
KS ci ratio: 1.146724e-01	ci left: 1.264445e-03	ci right 1.419366e-03	k: 1166	n:870000
TNFSF13   870000 perm   486 sec   (1791 perm/sec)   p_kst 1.340230e-03   p_cons 1.499322e-01   p_joint 5.406897e-03

Joint ci ratio: 5.660391e-02	ci left: 5.266989e-03	ci right 5.574917e-03	k: 4769	n:880000
Cons ci ratio: 9.948082e-03	ci left: 1.492353e-01	ci right 1.507284e-01	k: 131983	n:880000
KS ci ratio: 1.139907e-01	ci left: 1.265530e-03	ci right 1.419600e-03	k: 1180	n:880000
TNFSF13   880000 perm   495 sec   (1778 perm/sec)   p_kst 1.340909e-03   p_cons 1.499807e-01   p_joint 5.419318e-03

Joint ci ratio: 5.632144e-02	ci left: 5.260980e-03	ci right 5.566972e-03	k: 4817	n:890000
Cons ci ratio: 9.891244e-03	ci left: 1.492599e-01	ci right 1.507447e-01	k: 133501	n:890000
KS ci ratio: 1.133684e-01	ci left: 1.265502e-03	ci right 1.418672e-03	k: 1193	n:890000
TNFSF13   890000 perm   505 sec   (1764 perm/sec)   p_kst 1.340449e-03   p_cons 1.500011e-01   p_joint 5.412360e-03

Joint ci ratio: 5.604894e-02	ci left: 5.254013e-03	ci right 5.558073e-03	k: 4864	n:900000
Cons ci ratio: 9.834640e-03	ci left: 1.493028e-01	ci right 1.507795e-01	k: 135036	n:900000
KS ci ratio: 1.128969e-01	ci left: 1.262238e-03	ci right 1.414334e-03	k: 1203	n:900000
TNFSF13   900000 perm   514 sec   (1750 perm/sec)   p_kst 1.336667e-03   p_cons 1.500400e-01   p_joint 5.404444e-03

Joint ci ratio: 5.576325e-02	ci left: 5.250453e-03	ci right 5.552708e-03	k: 4914	n:910000
Cons ci ratio: 9.781315e-03	ci left: 1.492845e-01	ci right 1.507529e-01	k: 136516	n:910000
KS ci ratio: 1.124775e-01	ci left: 1.257978e-03	ci right 1.408961e-03	k: 1212	n:910000
TNFSF13   910000 perm   524 sec   (1737 perm/sec)   p_kst 1.331868e-03   p_cons 1.500176e-01   p_joint 5.400000e-03

Joint ci ratio: 5.549312e-02	ci left: 5.244831e-03	ci right 5.545253e-03	k: 4962	n:920000
Cons ci ratio: 9.727562e-03	ci left: 1.493002e-01	ci right 1.507607e-01	k: 138027	n:920000
KS ci ratio: 1.116973e-01	ci left: 1.262265e-03	ci right 1.412642e-03	k: 1229	n:920000
TNFSF13   920000 perm   534 sec   (1723 perm/sec)   p_kst 1.335870e-03   p_cons 1.500293e-01   p_joint 5.393478e-03

Joint ci ratio: 5.522133e-02	ci left: 5.240393e-03	ci right 5.539044e-03	k: 5011	n:930000
Cons ci ratio: 9.676644e-03	ci left: 1.492641e-01	ci right 1.507166e-01	k: 139490	n:930000
KS ci ratio: 1.107111e-01	ci left: 1.271690e-03	ci right 1.421766e-03	k: 1251	n:930000
TNFSF13   930000 perm   544 sec   (1709 perm/sec)   p_kst 1.345161e-03   p_cons 1.499892e-01   p_joint 5.388172e-03

Joint ci ratio: 5.491533e-02	ci left: 5.243399e-03	ci right 5.540513e-03	k: 5067	n:940000
Cons ci ratio: 9.623305e-03	ci left: 1.493137e-01	ci right 1.507586e-01	k: 141033	n:940000
KS ci ratio: 1.100102e-01	ci left: 1.274713e-03	ci right 1.424131e-03	k: 1267	n:940000
TNFSF13   940000 perm   554 sec   (1697 perm/sec)   p_kst 1.347872e-03   p_cons 1.500351e-01   p_joint 5.390426e-03

Joint ci ratio: 5.454484e-02	ci left: 5.259844e-03	ci right 5.555816e-03	k: 5136	n:950000
Cons ci ratio: 9.573049e-03	ci left: 1.493035e-01	ci right 1.507407e-01	k: 142520	n:950000
KS ci ratio: 1.091949e-01	ci left: 1.280747e-03	ci right 1.429688e-03	k: 1286	n:950000
TNFSF13   950000 perm   564 sec   (1684 perm/sec)   p_kst 1.353684e-03   p_cons 1.500211e-01   p_joint 5.406316e-03

Joint ci ratio: 5.427091e-02	ci left: 5.258484e-03	ci right 5.552846e-03	k: 5188	n:960000
Cons ci ratio: 9.527037e-03	ci left: 1.492010e-01	ci right 1.506303e-01	k: 143918	n:960000
KS ci ratio: 1.086894e-01	ci left: 1.279565e-03	ci right 1.427636e-03	k: 1298	n:960000
TNFSF13   960000 perm   574 sec   (1672 perm/sec)   p_kst 1.352083e-03   p_cons 1.499146e-01   p_joint 5.404167e-03

Joint ci ratio: 5.402698e-02	ci left: 5.252070e-03	ci right 5.544710e-03	k: 5235	n:970000
Cons ci ratio: 9.479955e-03	ci left: 1.491469e-01	ci right 1.505686e-01	k: 145361	n:970000
KS ci ratio: 1.082737e-01	ci left: 1.276403e-03	ci right 1.423507e-03	k: 1308	n:970000
TNFSF13   970000 perm   584 sec   (1660 perm/sec)   p_kst 1.348454e-03   p_cons 1.498567e-01   p_joint 5.396907e-03

Joint ci ratio: 5.373010e-02	ci left: 5.256864e-03	ci right 5.548112e-03	k: 5293	n:980000
Cons ci ratio: 9.430768e-03	ci left: 1.491693e-01	ci right 1.505838e-01	k: 146878	n:980000
KS ci ratio: 1.078217e-01	ci left: 1.274300e-03	ci right 1.420510e-03	k: 1319	n:980000
TNFSF13   980000 perm   595 sec   (1648 perm/sec)   p_kst 1.345918e-03   p_cons 1.498755e-01   p_joint 5.401020e-03

Joint ci ratio: 5.400403e-02	ci left: 5.150942e-03	ci right 5.437822e-03	k: 5240	n:990000
Cons ci ratio: 9.381893e-03	ci left: 1.492034e-01	ci right 1.506108e-01	k: 148407	n:990000
KS ci ratio: 1.073754e-01	ci left: 1.272240e-03	ci right 1.417571e-03	k: 1330	n:990000
TNFSF13   990000 perm   605 sec   (1636 perm/sec)   p_kst 1.343434e-03   p_cons 1.499061e-01   p_joint 5.292929e-03

Joint ci ratio: 5.376877e-02	ci left: 5.144813e-03	ci right 5.430064e-03	k: 5286	n:1000000
Cons ci ratio: 9.334868e-03	ci left: 1.492068e-01	ci right 1.506072e-01	k: 149906	n:1000000
KS ci ratio: 1.068151e-01	ci left: 1.273143e-03	ci right 1.417770e-03	k: 1344	n:1000000
TNFSF13   1000000 perm   616 sec   (1624 perm/sec)   p_kst 1.344000e-03   p_cons 1.499060e-01   p_joint 5.286000e-03

Joint ci ratio: 5.344094e-02	ci left: 5.157369e-03	ci right 5.441519e-03	k: 5351	n:1010000
Cons ci ratio: 9.288868e-03	ci left: 1.492014e-01	ci right 1.505947e-01	k: 151396	n:1010000
KS ci ratio: 1.061852e-01	ci left: 1.275957e-03	ci right 1.419996e-03	k: 1360	n:1010000
TNFSF13   1010000 perm   626 sec   (1613 perm/sec)   p_kst 1.346535e-03   p_cons 1.498970e-01   p_joint 5.298020e-03

Joint ci ratio: 5.321293e-02	ci left: 5.151302e-03	ci right 5.433871e-03	k: 5397	n:1020000
Cons ci ratio: 9.242724e-03	ci left: 1.492185e-01	ci right 1.506051e-01	k: 152909	n:1020000
KS ci ratio: 1.056432e-01	ci left: 1.276810e-03	ci right 1.420164e-03	k: 1374	n:1020000
TNFSF13   1020000 perm   637 sec   (1602 perm/sec)   p_kst 1.347059e-03   p_cons 1.499108e-01   p_joint 5.291176e-03

Joint ci ratio: 5.290971e-02	ci left: 5.160686e-03	ci right 5.442107e-03	k: 5459	n:1030000
Cons ci ratio: 9.196875e-03	ci left: 1.492460e-01	ci right 1.506259e-01	k: 154433	n:1030000
KS ci ratio: 1.050716e-01	ci left: 1.278593e-03	ci right 1.421322e-03	k: 1389	n:1030000
TNFSF13   1030000 perm   647 sec   (1591 perm/sec)   p_kst 1.348544e-03   p_cons 1.499350e-01   p_joint 5.300000e-03

Joint ci ratio: 5.256379e-02	ci left: 5.179383e-03	ci right 5.459921e-03	k: 5531	n:1040000
Cons ci ratio: 9.151047e-03	ci left: 1.492912e-01	ci right 1.506646e-01	k: 155976	n:1040000
KS ci ratio: 1.046210e-01	ci left: 1.277535e-03	ci right 1.419497e-03	k: 1401	n:1040000
TNFSF13   1040000 perm   658 sec   (1580 perm/sec)   p_kst 1.347115e-03   p_cons 1.499769e-01   p_joint 5.318269e-03

Joint ci ratio: 5.232792e-02	ci left: 5.177050e-03	ci right 5.456166e-03	k: 5581	n:1050000
Cons ci ratio: 9.107086e-03	ci left: 1.493023e-01	ci right 1.506692e-01	k: 157484	n:1050000
KS ci ratio: 1.041393e-01	ci left: 1.277425e-03	ci right 1.418682e-03	k: 1414	n:1050000
TNFSF13   1050000 perm   669 sec   (1570 perm/sec)   p_kst 1.346667e-03   p_cons 1.499848e-01   p_joint 5.315238e-03

Joint ci ratio: 5.201634e-02	ci left: 5.190594e-03	ci right 5.468723e-03	k: 5648	n:1060000
Cons ci ratio: 9.065800e-03	ci left: 1.492558e-01	ci right 1.506160e-01	k: 158931	n:1060000
KS ci ratio: 1.035916e-01	ci left: 1.279158e-03	ci right 1.419816e-03	k: 1429	n:1060000
TNFSF13   1060000 perm   680 sec   (1559 perm/sec)   p_kst 1.348113e-03   p_cons 1.499349e-01   p_joint 5.328302e-03

Joint ci ratio: 5.122595e-02	ci left: 5.303532e-03	ci right 5.583268e-03	k: 5823	n:1070000
Cons ci ratio: 9.021331e-03	ci left: 1.493155e-01	ci right 1.506696e-01	k: 160491	n:1070000
KS ci ratio: 1.030168e-01	ci left: 1.281770e-03	ci right 1.421886e-03	k: 1445	n:1070000
TNFSF13   1070000 perm   691 sec   (1548 perm/sec)   p_kst 1.350467e-03   p_cons 1.499916e-01   p_joint 5.442056e-03

Joint ci ratio: 5.102941e-02	ci left: 5.295559e-03	ci right 5.573770e-03	k: 5868	n:1080000
Cons ci ratio: 8.979857e-03	ci left: 1.493076e-01	ci right 1.506553e-01	k: 161979	n:1080000
KS ci ratio: 1.027333e-01	ci left: 1.277118e-03	ci right 1.416319e-03	k: 1453	n:1080000
TNFSF13   1080000 perm   702 sec   (1538 perm/sec)   p_kst 1.345370e-03   p_cons 1.499806e-01   p_joint 5.433333e-03

Joint ci ratio: 5.085241e-02	ci left: 5.284110e-03	ci right 5.560730e-03	k: 5909	n:1090000
Cons ci ratio: 8.938211e-03	ci left: 1.493210e-01	ci right 1.506625e-01	k: 163490	n:1090000
KS ci ratio: 1.022073e-01	ci left: 1.278810e-03	ci right 1.417439e-03	k: 1468	n:1090000
TNFSF13   1090000 perm   713 sec   (1528 perm/sec)   p_kst 1.346789e-03   p_cons 1.499908e-01   p_joint 5.421101e-03

Joint ci ratio: 5.065585e-02	ci left: 5.277360e-03	ci right 5.552527e-03	k: 5955	n:1100000
Cons ci ratio: 8.898344e-03	ci left: 1.492996e-01	ci right 1.506350e-01	k: 164963	n:1100000
KS ci ratio: 1.018959e-01	ci left: 1.275158e-03	ci right 1.412944e-03	k: 1477	n:1100000
TNFSF13   1100000 perm   725 sec   (1518 perm/sec)   p_kst 1.342727e-03   p_cons 1.499664e-01   p_joint 5.413636e-03

Joint ci ratio: 5.042355e-02	ci left: 5.278740e-03	ci right 5.552680e-03	k: 6010	n:1110000
Cons ci ratio: 8.859131e-03	ci left: 1.492750e-01	ci right 1.506043e-01	k: 166432	n:1110000
KS ci ratio: 1.015873e-01	ci left: 1.271572e-03	ci right 1.408529e-03	k: 1486	n:1110000
TNFSF13   1110000 perm   736 sec   (1508 perm/sec)   p_kst 1.338739e-03   p_cons 1.499387e-01   p_joint 5.414414e-03

Joint ci ratio: 4.672645e-02	ci left: 6.098700e-03	ci right 6.391363e-03	k: 6993	n:1120000
Cons ci ratio: 8.821204e-03	ci left: 1.492287e-01	ci right 1.505517e-01	k: 167876	n:1120000
KS ci ratio: 1.012137e-01	ci left: 1.269790e-03	ci right 1.406024e-03	k: 1497	n:1120000
TNFSF13   1120000 perm   748 sec   (1498 perm/sec)   p_kst 1.336607e-03   p_cons 1.498893e-01   p_joint 6.243750e-03

Joint ci ratio: 4.652735e-02	ci left: 6.097207e-03	ci right 6.388518e-03	k: 7053	n:1130000
Cons ci ratio: 8.782967e-03	ci left: 1.492061e-01	ci right 1.505232e-01	k: 169346	n:1130000
KS ci ratio: 1.008777e-01	ci left: 1.267179e-03	ci right 1.402654e-03	k: 1507	n:1130000
TNFSF13   1130000 perm   759 sec   (1489 perm/sec)   p_kst 1.333628e-03   p_cons 1.498637e-01   p_joint 6.241593e-03

Joint ci ratio: 4.630459e-02	ci left: 6.102680e-03	ci right 6.392820e-03	k: 7121	n:1140000
Cons ci ratio: 8.743928e-03	ci left: 1.492215e-01	ci right 1.505329e-01	k: 170859	n:1140000
KS ci ratio: 1.004788e-01	ci left: 1.266325e-03	ci right 1.401141e-03	k: 1519	n:1140000
TNFSF13   1140000 perm   771 sec   (1478 perm/sec)   p_kst 1.332456e-03   p_cons 1.498763e-01   p_joint 6.246491e-03

Joint ci ratio: 4.614315e-02	ci left: 6.092588e-03	ci right 6.381212e-03	k: 7171	n:1150000
Cons ci ratio: 8.705138e-03	ci left: 1.492445e-01	ci right 1.505503e-01	k: 172381	n:1150000
KS ci ratio: 1.002814e-01	ci left: 1.260400e-03	ci right 1.394306e-03	k: 1525	n:1150000
TNFSF13   1150000 perm   783 sec   (1468 perm/sec)   p_kst 1.326087e-03   p_cons 1.498965e-01   p_joint 6.235652e-03

Joint ci ratio: 4.595139e-02	ci left: 6.091194e-03	ci right 6.378521e-03	k: 7231	n:1160000
Cons ci ratio: 8.666391e-03	ci left: 1.492809e-01	ci right 1.505811e-01	k: 173919	n:1160000
KS ci ratio: 9.979204e-02	ci left: 1.262142e-03	ci right 1.395541e-03	k: 1540	n:1160000
TNFSF13   1160000 perm   795 sec   (1459 perm/sec)   p_kst 1.327586e-03   p_cons 1.499302e-01   p_joint 6.233621e-03

Outputting figure to mutsig2_images.part000000000179/TNFSF13.2_788_1160000_0.0013276_0.14993_0.0062336.png
                gene_name: TNFSF13
               theta_stop: 0.100 
                    nperm: 1160000 
                     p_ks: 0.0013 
        ci_ks_bounds_left: 0.0013 
       ci_ks_bounds_right: 0.0014 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.0062 
     ci_joint_bounds_left: 0.0061 
    ci_joint_bounds_right: 0.0064 

Current progress: 94 percent done.
TNIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.251794e-02	ci left: 2.732942e-01	ci right 2.910328e-01	k: 2821	n:10000
Cons ci ratio: 7.812958e-02	ci left: 1.931834e-01	ci right 2.089911e-01	k: 2010	n:10000
KS ci ratio: 1.444354e-01	ci left: 6.362530e-02	ci right 7.362777e-02	k: 685	n:10000
TNIP1   10000 perm   2 sec   (5420 perm/sec)   p_kst 6.850000e-02   p_cons 2.010000e-01   p_joint 2.821000e-01

Joint ci ratio: 4.704357e-02	ci left: 2.515995e-01	ci right 2.637711e-01	k: 5153	n:20000
Cons ci ratio: 5.531551e-02	ci left: 1.951185e-01	ci right 2.062687e-01	k: 4013	n:20000
KS ci ratio: 1.003390e-01	ci left: 6.733170e-02	ci right 7.449365e-02	k: 1417	n:20000
TNIP1   20000 perm   4 sec   (4914 perm/sec)   p_kst 7.085000e-02   p_cons 2.006500e-01   p_joint 2.576500e-01

Joint ci ratio: 5.777519e-02	ci left: 1.291764e-01	ci right 1.368948e-01	k: 3990	n:30000
Cons ci ratio: 4.498757e-02	ci left: 1.974030e-01	ci right 2.065214e-01	k: 6058	n:30000
KS ci ratio: 8.221867e-02	ci left: 6.753021e-02	ci right 7.335331e-02	k: 2112	n:30000
TNIP1   30000 perm   6 sec   (4713 perm/sec)   p_kst 7.040000e-02   p_cons 2.019333e-01   p_joint 1.330000e-01

Outputting figure to mutsig2_images.part000000000179/TNIP1.2_1979_30000_0.0704_0.20193_0.133.png
                gene_name: TNIP1
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 96 percent done.
TNNI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.370683e-01	ci left: 7.039603e-02	ci right 8.085279e-02	k: 755	n:10000
Cons ci ratio: 1.370683e-01	ci left: 7.039603e-02	ci right 8.085279e-02	k: 755	n:10000
KS ci ratio: 3.251226e-02	ci left: 5.826932e-01	ci right 6.020529e-01	k: 5924	n:10000
TNNI1   10000 perm   1 sec   (7344 perm/sec)   p_kst 5.924000e-01   p_cons 7.550000e-02   p_joint 7.550000e-02

Joint ci ratio: 9.637342e-02	ci left: 7.270641e-02	ci right 8.011730e-02	k: 1527	n:20000
Cons ci ratio: 9.637342e-02	ci left: 7.270641e-02	ci right 8.011730e-02	k: 1527	n:20000
KS ci ratio: 2.297189e-02	ci left: 5.859528e-01	ci right 5.996202e-01	k: 11856	n:20000
TNNI1   20000 perm   3 sec   (6146 perm/sec)   p_kst 5.928000e-01   p_cons 7.635000e-02   p_joint 7.635000e-02

Outputting figure to mutsig2_images.part000000000179/TNNI1.2_588_20000_0.5928_0.07635_0.07635.png
                gene_name: TNNI1
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.080 

Current progress: 98 percent done.
TNPO2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.891494e-03	ci left: 9.749320e-01	ci right 9.807851e-01	k: 9780	n:10000
Cons ci ratio: 3.729637e-02	ci left: 5.149562e-01	ci right 5.346293e-01	k: 5248	n:10000
KS ci ratio: 3.739367e-02	ci left: 5.136554e-01	ci right 5.333309e-01	k: 5235	n:10000
TNPO2   10000 perm   2 sec   (5568 perm/sec)   p_kst 5.235000e-01   p_cons 5.248000e-01   p_joint 9.780000e-01

Outputting figure to mutsig2_images.part000000000179/TNPO2.2_2786_10000_0.5235_0.5248_0.978.png
                gene_name: TNPO2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000179
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 179 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1537>
Subject: Job 9894186: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1537>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000180> was used as the working directory.
Started at Sat Oct  6 00:33:19 2012
Results reported at Sat Oct  6 04:55:50 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000180.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000180.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 180  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000180.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  16726.88 sec.
    Max Memory :      4727 MB
    Max Swap   :      7061 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
180
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 180
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 180: processing genes 16138 - 16227
Calculating significance of each gene.
Using projection method.
16138	TNPO3	9.052623e-01
16139	TNR	6.604291e-04
16140	TNRC18	9.999652e-01
16141	TNRC6A	9.360481e-01
In gene TNRC6B the following bins exceed PROBCAP:
    READ-AG-A01L	categ 6	N = 5448    n = 1	mu =   3.23e-07
16142	TNRC6B	2.122502e-01
16143	TNRC6C	6.829296e-01
16144	TNS1	4.765474e-02
16145	TNS3	7.525833e-01
16146	TNS4	9.350482e-01
16147	TNXB	7.253803e-01
16148	TOB1	4.914207e-01
16149	TOB2	7.053350e-01
16150	TOE1	8.521874e-01
16151	TOLLIP	7.567658e-01
16152	TOM1	8.343747e-01
16153	TOM1L1	7.777622e-01
16154	TOM1L2	9.366448e-01
16155	TOMM20	1
16156	TOMM20L	4.460614e-01
16157	TOMM22	6.447690e-01
16158	TOMM34	2.825748e-01
16159	TOMM40	1
16160	TOMM40L	7.735000e-01
16161	TOMM5	1
16162	TOMM7	1
In gene TOMM70A the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 1547    n = 1	mu =   7.59e-07
16163	TOMM70A	1.464257e-01
16164	TOP1	1.462002e-01
16165	TOP1MT	5.432209e-01
16166	TOP2A	9.323910e-01
16167	TOP2B	5.534579e-01
16168	TOP3A	4.226296e-01
16169	TOP3B	7.720900e-01
16170	TOPBP1	9.941800e-01
16171	TOPORS	7.204127e-02
16172	TOR1A	6.945950e-02
16173	TOR1AIP1	7.176318e-01
16174	TOR1AIP2	1
16175	TOR1B	1
16176	TOR2A	1
16177	TOR3A	4.128901e-01
16178	TOX	7.623612e-03
16179	TOX2	7.025228e-01
16180	TOX3	1
16181	TOX4	3.515247e-02
In gene TP53 the following bins exceed PROBCAP:
    COAD-A6-2674	categ 6	N = 1311    n = 1	mu =   1.03e-07
    COAD-A6-2678	categ 6	N = 1311    n = 1	mu =   2.07e-07
    COAD-AA-3553	categ 6	N = 1311    n = 1	mu =   1.72e-07
    COAD-AA-3560	categ 6	N = 1311    n = 1	mu =   2.76e-07
    COAD-AA-3842	categ 6	N = 1282    n = 1	mu =   2.96e-07
    COAD-AA-3980	categ 6	N = 1282    n = 1	mu =   8.55e-07
    COAD-AA-A004	categ 6	N = 1282    n = 1	mu =   1.64e-07
    COAD-AA-A01Z	categ 6	N = 1282    n = 1	mu =   3.62e-07
    READ-AG-3594	categ 6	N = 1311    n = 1	mu =   1.72e-07
    READ-AG-3890	categ 6	N = 1282    n = 1	mu =   1.64e-07
    READ-AG-4015	categ 6	N = 1282    n = 1	mu =   3.29e-07
16182	TP53	0
16183	TP53AIP1	1.499865e-01
16184	TP53BP1	2.827615e-01
16185	TP53BP2	4.022262e-01
16186	TP53I11	1
16187	TP53I13	1
16188	TP53I3	2.441634e-01
16189	TP53INP1	1.578155e-01
16190	TP53INP2	1
16191	TP53RK	4.610403e-01
16192	TP53TG5	7.686009e-02
16193	TP63	1.309856e-02
16194	TP73	1
16195	TPBG	8.145187e-01
16196	TPCN1	9.136554e-01
16197	TPCN2	4.770017e-01
16198	TPD52	3.591963e-01
16199	TPD52L1	3.259519e-01
16200	TPD52L2	6.167698e-01
16201	TPD52L3	4.918559e-01
16202	TPH1	3.513865e-01
16203	TPH2	8.431256e-03
16204	TPI1	6.937544e-01
16205	TPK1	6.597388e-01
16206	TPM1	5.995168e-01
16207	TPM2	4.445997e-02
16208	TPM3	3.926118e-01
16209	TPM4	2.108702e-01
16210	TPMT	2.700940e-01
16211	TPO	1.276409e-02
16212	TPP1	1.527025e-02
16213	TPP2	2.961418e-01
16214	TPPP	6.138347e-01
16215	TPPP2	4.151745e-01
16216	TPPP3	1
16217	TPR	2.978885e-01
16218	TPRA1	1
16219	TPRG1	5.821719e-01
16220	TPRG1L	1
16221	TPRKB	1
16222	TPRN	5.839394e-01
16223	TPRX1	4.271318e-02
16224	TPSAB1	1
16225	TPSB2	1
16226	TPSD1	8.067727e-01
16227	TPSG1	1
Done

Running MutSig 2:
Scatter job 180: processing genes 16138 - 16227
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TP53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
TP53   10000 perm   8 sec   (1183 perm/sec)   p_kst 1.000000e-04   p_cons 1.000000e-04   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
TP53   20000 perm   21 sec   (956 perm/sec)   p_kst 5.000000e-05   p_cons 5.000000e-05   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
TP53   30000 perm   30 sec   (1015 perm/sec)   p_kst 3.333333e-05   p_cons 3.333333e-05   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
TP53   40000 perm   38 sec   (1050 perm/sec)   p_kst 2.500000e-05   p_cons 2.500000e-05   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
TP53   50000 perm   47 sec   (1071 perm/sec)   p_kst 2.000000e-05   p_cons 2.000000e-05   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
TP53   60000 perm   55 sec   (1081 perm/sec)   p_kst 1.666667e-05   p_cons 1.666667e-05   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
TP53   70000 perm   64 sec   (1086 perm/sec)   p_kst 1.428571e-05   p_cons 1.428571e-05   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
TP53   80000 perm   73 sec   (1091 perm/sec)   p_kst 1.250000e-05   p_cons 1.250000e-05   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
TP53   90000 perm   82 sec   (1094 perm/sec)   p_kst 1.111111e-05   p_cons 1.111111e-05   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
TP53   100000 perm   91 sec   (1096 perm/sec)   p_kst 1.000000e-05   p_cons 1.000000e-05   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
TP53   110000 perm   100 sec   (1096 perm/sec)   p_kst 9.090909e-06   p_cons 9.090909e-06   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
TP53   120000 perm   110 sec   (1095 perm/sec)   p_kst 8.333333e-06   p_cons 8.333333e-06   p_joint 0

Joint ci ratio: 3.919970e+00	ci left: 0	ci right 2.837559e-05	k: 0	n:130000
Cons ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
TP53   130000 perm   119 sec   (1094 perm/sec)   p_kst 7.692308e-06   p_cons 7.692308e-06   p_joint 0

Joint ci ratio: 3.919972e+00	ci left: 0	ci right 2.634879e-05	k: 0	n:140000
Cons ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
TP53   140000 perm   128 sec   (1092 perm/sec)   p_kst 7.142857e-06   p_cons 7.142857e-06   p_joint 0

Joint ci ratio: 3.919974e+00	ci left: 0	ci right 2.459223e-05	k: 0	n:150000
Cons ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
TP53   150000 perm   138 sec   (1089 perm/sec)   p_kst 6.666667e-06   p_cons 6.666667e-06   p_joint 0

Joint ci ratio: 3.919976e+00	ci left: 0	ci right 2.305523e-05	k: 0	n:160000
Cons ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
TP53   160000 perm   147 sec   (1087 perm/sec)   p_kst 6.250000e-06   p_cons 6.250000e-06   p_joint 0

Joint ci ratio: 3.919977e+00	ci left: 0	ci right 2.169906e-05	k: 0	n:170000
Cons ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
TP53   170000 perm   157 sec   (1084 perm/sec)   p_kst 5.882353e-06   p_cons 5.882353e-06   p_joint 0

Joint ci ratio: 3.919978e+00	ci left: 0	ci right 2.049356e-05	k: 0	n:180000
Cons ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
TP53   180000 perm   166 sec   (1081 perm/sec)   p_kst 5.555556e-06   p_cons 5.555556e-06   p_joint 0

Joint ci ratio: 3.919979e+00	ci left: 0	ci right 1.941497e-05	k: 0	n:190000
Cons ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
TP53   190000 perm   176 sec   (1078 perm/sec)   p_kst 5.263158e-06   p_cons 5.263158e-06   p_joint 0

Joint ci ratio: 3.919980e+00	ci left: 0	ci right 1.844423e-05	k: 0	n:200000
Cons ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
TP53   200000 perm   186 sec   (1074 perm/sec)   p_kst 5.000000e-06   p_cons 5.000000e-06   p_joint 0

Joint ci ratio: 3.919981e+00	ci left: 0	ci right 1.756594e-05	k: 0	n:210000
Cons ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
TP53   210000 perm   196 sec   (1070 perm/sec)   p_kst 4.761905e-06   p_cons 4.761905e-06   p_joint 0

Joint ci ratio: 3.919982e+00	ci left: 0	ci right 1.676749e-05	k: 0	n:220000
Cons ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
TP53   220000 perm   206 sec   (1067 perm/sec)   p_kst 4.545455e-06   p_cons 4.545455e-06   p_joint 0

Joint ci ratio: 3.919983e+00	ci left: 0	ci right 1.603848e-05	k: 0	n:230000
Cons ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
TP53   230000 perm   216 sec   (1063 perm/sec)   p_kst 4.347826e-06   p_cons 4.347826e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.537021e-05	k: 0	n:240000
Cons ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
TP53   240000 perm   226 sec   (1060 perm/sec)   p_kst 4.166667e-06   p_cons 4.166667e-06   p_joint 0

Joint ci ratio: 3.919984e+00	ci left: 0	ci right 1.475541e-05	k: 0	n:250000
Cons ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
TP53   250000 perm   237 sec   (1056 perm/sec)   p_kst 4.000000e-06   p_cons 4.000000e-06   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.418790e-05	k: 0	n:260000
Cons ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
TP53   260000 perm   247 sec   (1052 perm/sec)   p_kst 3.846154e-06   p_cons 3.846154e-06   p_joint 0

Joint ci ratio: 3.919985e+00	ci left: 0	ci right 1.366242e-05	k: 0	n:270000
Cons ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
TP53   270000 perm   258 sec   (1048 perm/sec)   p_kst 3.703704e-06   p_cons 3.703704e-06   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.317448e-05	k: 0	n:280000
Cons ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
TP53   280000 perm   268 sec   (1044 perm/sec)   p_kst 3.571429e-06   p_cons 3.571429e-06   p_joint 0

Joint ci ratio: 3.919986e+00	ci left: 0	ci right 1.272019e-05	k: 0	n:290000
Cons ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
TP53   290000 perm   279 sec   (1041 perm/sec)   p_kst 3.448276e-06   p_cons 3.448276e-06   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.229619e-05	k: 0	n:300000
Cons ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
TP53   300000 perm   289 sec   (1037 perm/sec)   p_kst 3.333333e-06   p_cons 3.333333e-06   p_joint 0

Joint ci ratio: 3.919987e+00	ci left: 0	ci right 1.189954e-05	k: 0	n:310000
Cons ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
TP53   310000 perm   300 sec   (1033 perm/sec)   p_kst 3.225806e-06   p_cons 3.225806e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.152768e-05	k: 0	n:320000
Cons ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
TP53   320000 perm   311 sec   (1029 perm/sec)   p_kst 3.125000e-06   p_cons 3.125000e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.117836e-05	k: 0	n:330000
Cons ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
TP53   330000 perm   322 sec   (1025 perm/sec)   p_kst 3.030303e-06   p_cons 3.030303e-06   p_joint 0

Joint ci ratio: 3.919988e+00	ci left: 0	ci right 1.084959e-05	k: 0	n:340000
Cons ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
TP53   340000 perm   333 sec   (1020 perm/sec)   p_kst 2.941176e-06   p_cons 2.941176e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.053960e-05	k: 0	n:350000
Cons ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
TP53   350000 perm   345 sec   (1016 perm/sec)   p_kst 2.857143e-06   p_cons 2.857143e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 1.024683e-05	k: 0	n:360000
Cons ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
TP53   360000 perm   356 sec   (1011 perm/sec)   p_kst 2.777778e-06   p_cons 2.777778e-06   p_joint 0

Joint ci ratio: 3.919989e+00	ci left: 0	ci right 9.969895e-06	k: 0	n:370000
Cons ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
TP53   370000 perm   367 sec   (1007 perm/sec)   p_kst 2.702703e-06   p_cons 2.702703e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.707530e-06	k: 0	n:380000
Cons ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
TP53   380000 perm   379 sec   (1003 perm/sec)   p_kst 2.631579e-06   p_cons 2.631579e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.458621e-06	k: 0	n:390000
Cons ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
TP53   390000 perm   390 sec   (999 perm/sec)   p_kst 2.564103e-06   p_cons 2.564103e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 9.222156e-06	k: 0	n:400000
Cons ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
TP53   400000 perm   402 sec   (995 perm/sec)   p_kst 2.500000e-06   p_cons 2.500000e-06   p_joint 0

Joint ci ratio: 3.919990e+00	ci left: 0	ci right 8.997226e-06	k: 0	n:410000
Cons ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
KS ci ratio: 2.771848e+00	ci left: 6.175075e-08	ci right 1.358930e-05	k: 1	n:410000
TP53   410000 perm   414 sec   (991 perm/sec)   p_kst 2.439024e-06   p_cons 2.439024e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.783008e-06	k: 0	n:420000
Cons ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
KS ci ratio: 2.771849e+00	ci left: 6.028049e-08	ci right 1.326575e-05	k: 1	n:420000
TP53   420000 perm   425 sec   (987 perm/sec)   p_kst 2.380952e-06   p_cons 2.380952e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.578753e-06	k: 0	n:430000
Cons ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
KS ci ratio: 2.771849e+00	ci left: 5.887862e-08	ci right 1.295724e-05	k: 1	n:430000
TP53   430000 perm   437 sec   (983 perm/sec)   p_kst 2.325581e-06   p_cons 2.325581e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.383782e-06	k: 0	n:440000
Cons ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
KS ci ratio: 2.771849e+00	ci left: 5.754047e-08	ci right 1.266276e-05	k: 1	n:440000
TP53   440000 perm   449 sec   (980 perm/sec)   p_kst 2.272727e-06   p_cons 2.272727e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.197476e-06	k: 0	n:450000
Cons ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
KS ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
TP53   450000 perm   461 sec   (976 perm/sec)   p_kst 2.222222e-06   p_cons 2.222222e-06   p_joint 0

Joint ci ratio: 3.919991e+00	ci left: 0	ci right 8.019271e-06	k: 0	n:460000
Cons ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
KS ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
TP53   460000 perm   473 sec   (972 perm/sec)   p_kst 2.173913e-06   p_cons 2.173913e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.848649e-06	k: 0	n:470000
Cons ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
KS ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
TP53   470000 perm   485 sec   (968 perm/sec)   p_kst 2.127660e-06   p_cons 2.127660e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.685136e-06	k: 0	n:480000
Cons ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
KS ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
TP53   480000 perm   498 sec   (965 perm/sec)   p_kst 2.083333e-06   p_cons 2.083333e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.528297e-06	k: 0	n:490000
Cons ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
KS ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
TP53   490000 perm   510 sec   (961 perm/sec)   p_kst 2.040816e-06   p_cons 2.040816e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.377732e-06	k: 0	n:500000
Cons ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
KS ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
TP53   500000 perm   522 sec   (957 perm/sec)   p_kst 2.000000e-06   p_cons 2.000000e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.233071e-06	k: 0	n:510000
Cons ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
KS ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
TP53   510000 perm   535 sec   (953 perm/sec)   p_kst 1.960784e-06   p_cons 1.960784e-06   p_joint 0

Joint ci ratio: 3.919992e+00	ci left: 0	ci right 7.093974e-06	k: 0	n:520000
Cons ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
KS ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
TP53   520000 perm   548 sec   (949 perm/sec)   p_kst 1.923077e-06   p_cons 1.923077e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.960126e-06	k: 0	n:530000
Cons ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
KS ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
TP53   530000 perm   560 sec   (946 perm/sec)   p_kst 1.886792e-06   p_cons 1.886792e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.831235e-06	k: 0	n:540000
Cons ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
KS ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
TP53   540000 perm   573 sec   (943 perm/sec)   p_kst 1.851852e-06   p_cons 1.851852e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.707031e-06	k: 0	n:550000
Cons ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
KS ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
TP53   550000 perm   586 sec   (939 perm/sec)   p_kst 1.818182e-06   p_cons 1.818182e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.587263e-06	k: 0	n:560000
Cons ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
TP53   560000 perm   599 sec   (935 perm/sec)   p_kst 1.785714e-06   p_cons 1.785714e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.471697e-06	k: 0	n:570000
Cons ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
TP53   570000 perm   612 sec   (932 perm/sec)   p_kst 1.754386e-06   p_cons 1.754386e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.360117e-06	k: 0	n:580000
Cons ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
TP53   580000 perm   625 sec   (929 perm/sec)   p_kst 1.724138e-06   p_cons 1.724138e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.252319e-06	k: 0	n:590000
Cons ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
TP53   590000 perm   638 sec   (925 perm/sec)   p_kst 1.694915e-06   p_cons 1.694915e-06   p_joint 0

Joint ci ratio: 3.919993e+00	ci left: 0	ci right 6.148114e-06	k: 0	n:600000
Cons ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
TP53   600000 perm   651 sec   (922 perm/sec)   p_kst 1.666667e-06   p_cons 1.666667e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 6.047325e-06	k: 0	n:610000
Cons ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
TP53   610000 perm   664 sec   (918 perm/sec)   p_kst 1.639344e-06   p_cons 1.639344e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.949788e-06	k: 0	n:620000
Cons ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
TP53   620000 perm   678 sec   (915 perm/sec)   p_kst 1.612903e-06   p_cons 1.612903e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.855347e-06	k: 0	n:630000
Cons ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
TP53   630000 perm   691 sec   (911 perm/sec)   p_kst 1.587302e-06   p_cons 1.587302e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.763858e-06	k: 0	n:640000
Cons ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
TP53   640000 perm   705 sec   (908 perm/sec)   p_kst 1.562500e-06   p_cons 1.562500e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.675183e-06	k: 0	n:650000
Cons ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
TP53   650000 perm   718 sec   (905 perm/sec)   p_kst 1.538462e-06   p_cons 1.538462e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.589196e-06	k: 0	n:660000
Cons ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
TP53   660000 perm   732 sec   (901 perm/sec)   p_kst 1.515152e-06   p_cons 1.515152e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.505775e-06	k: 0	n:670000
Cons ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
TP53   670000 perm   746 sec   (898 perm/sec)   p_kst 1.492537e-06   p_cons 1.492537e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.424808e-06	k: 0	n:680000
Cons ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
TP53   680000 perm   760 sec   (895 perm/sec)   p_kst 1.470588e-06   p_cons 1.470588e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.346188e-06	k: 0	n:690000
Cons ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
TP53   690000 perm   774 sec   (891 perm/sec)   p_kst 1.449275e-06   p_cons 1.449275e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.269814e-06	k: 0	n:700000
Cons ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
TP53   700000 perm   788 sec   (888 perm/sec)   p_kst 1.428571e-06   p_cons 1.428571e-06   p_joint 0

Joint ci ratio: 3.919994e+00	ci left: 0	ci right 5.195591e-06	k: 0	n:710000
Cons ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
TP53   710000 perm   803 sec   (885 perm/sec)   p_kst 1.408451e-06   p_cons 1.408451e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.123431e-06	k: 0	n:720000
Cons ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
TP53   720000 perm   817 sec   (881 perm/sec)   p_kst 1.388889e-06   p_cons 1.388889e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 5.053247e-06	k: 0	n:730000
Cons ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
TP53   730000 perm   831 sec   (878 perm/sec)   p_kst 1.369863e-06   p_cons 1.369863e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.984960e-06	k: 0	n:740000
Cons ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
TP53   740000 perm   845 sec   (875 perm/sec)   p_kst 1.351351e-06   p_cons 1.351351e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.918494e-06	k: 0	n:750000
Cons ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
TP53   750000 perm   860 sec   (872 perm/sec)   p_kst 1.333333e-06   p_cons 1.333333e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.853777e-06	k: 0	n:760000
Cons ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
TP53   760000 perm   875 sec   (869 perm/sec)   p_kst 1.315789e-06   p_cons 1.315789e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.790741e-06	k: 0	n:770000
Cons ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
TP53   770000 perm   889 sec   (866 perm/sec)   p_kst 1.298701e-06   p_cons 1.298701e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.729321e-06	k: 0	n:780000
Cons ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
TP53   780000 perm   904 sec   (863 perm/sec)   p_kst 1.282051e-06   p_cons 1.282051e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.669457e-06	k: 0	n:790000
Cons ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
TP53   790000 perm   919 sec   (860 perm/sec)   p_kst 1.265823e-06   p_cons 1.265823e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.611089e-06	k: 0	n:800000
Cons ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
TP53   800000 perm   934 sec   (856 perm/sec)   p_kst 1.250000e-06   p_cons 1.250000e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.554162e-06	k: 0	n:810000
Cons ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
TP53   810000 perm   949 sec   (853 perm/sec)   p_kst 1.234568e-06   p_cons 1.234568e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.498623e-06	k: 0	n:820000
Cons ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
TP53   820000 perm   964 sec   (850 perm/sec)   p_kst 1.219512e-06   p_cons 1.219512e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.444423e-06	k: 0	n:830000
Cons ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
TP53   830000 perm   979 sec   (848 perm/sec)   p_kst 1.204819e-06   p_cons 1.204819e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.391514e-06	k: 0	n:840000
Cons ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
TP53   840000 perm   995 sec   (845 perm/sec)   p_kst 1.190476e-06   p_cons 1.190476e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.339849e-06	k: 0	n:850000
Cons ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
TP53   850000 perm   1010 sec   (842 perm/sec)   p_kst 1.176471e-06   p_cons 1.176471e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.289386e-06	k: 0	n:860000
Cons ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
TP53   860000 perm   1026 sec   (838 perm/sec)   p_kst 1.162791e-06   p_cons 1.162791e-06   p_joint 0

Joint ci ratio: 3.919995e+00	ci left: 0	ci right 4.240082e-06	k: 0	n:870000
Cons ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
TP53   870000 perm   1041 sec   (835 perm/sec)   p_kst 1.149425e-06   p_cons 1.149425e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.191900e-06	k: 0	n:880000
Cons ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
TP53   880000 perm   1057 sec   (833 perm/sec)   p_kst 1.136364e-06   p_cons 1.136364e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.144800e-06	k: 0	n:890000
Cons ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
TP53   890000 perm   1073 sec   (830 perm/sec)   p_kst 1.123596e-06   p_cons 1.123596e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.098747e-06	k: 0	n:900000
Cons ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
TP53   900000 perm   1088 sec   (827 perm/sec)   p_kst 1.111111e-06   p_cons 1.111111e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.053705e-06	k: 0	n:910000
Cons ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
TP53   910000 perm   1104 sec   (824 perm/sec)   p_kst 1.098901e-06   p_cons 1.098901e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 4.009644e-06	k: 0	n:920000
Cons ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
TP53   920000 perm   1120 sec   (821 perm/sec)   p_kst 1.086957e-06   p_cons 1.086957e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.966529e-06	k: 0	n:930000
Cons ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
TP53   930000 perm   1136 sec   (819 perm/sec)   p_kst 1.075269e-06   p_cons 1.075269e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.924332e-06	k: 0	n:940000
Cons ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
TP53   940000 perm   1152 sec   (816 perm/sec)   p_kst 1.063830e-06   p_cons 1.063830e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.883023e-06	k: 0	n:950000
Cons ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
TP53   950000 perm   1168 sec   (813 perm/sec)   p_kst 1.052632e-06   p_cons 1.052632e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.842575e-06	k: 0	n:960000
Cons ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
TP53   960000 perm   1185 sec   (810 perm/sec)   p_kst 1.041667e-06   p_cons 1.041667e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.802961e-06	k: 0	n:970000
Cons ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
TP53   970000 perm   1201 sec   (807 perm/sec)   p_kst 1.030928e-06   p_cons 1.030928e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.764156e-06	k: 0	n:980000
Cons ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
TP53   980000 perm   1218 sec   (805 perm/sec)   p_kst 1.020408e-06   p_cons 1.020408e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.726134e-06	k: 0	n:990000
Cons ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
TP53   990000 perm   1234 sec   (802 perm/sec)   p_kst 1.010101e-06   p_cons 1.010101e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.688873e-06	k: 0	n:1000000
Cons ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
TP53   1000000 perm   1251 sec   (799 perm/sec)   p_kst 1.000000e-06   p_cons 1.000000e-06   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.652349e-06	k: 0	n:1010000
Cons ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
TP53   1010000 perm   1268 sec   (797 perm/sec)   p_kst 9.900990e-07   p_cons 9.900990e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.616542e-06	k: 0	n:1020000
Cons ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
TP53   1020000 perm   1285 sec   (794 perm/sec)   p_kst 9.803922e-07   p_cons 9.803922e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.581430e-06	k: 0	n:1030000
Cons ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
TP53   1030000 perm   1302 sec   (791 perm/sec)   p_kst 9.708738e-07   p_cons 9.708738e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.546993e-06	k: 0	n:1040000
Cons ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
TP53   1040000 perm   1319 sec   (789 perm/sec)   p_kst 9.615385e-07   p_cons 9.615385e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.513212e-06	k: 0	n:1050000
Cons ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
TP53   1050000 perm   1336 sec   (786 perm/sec)   p_kst 9.523810e-07   p_cons 9.523810e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.480069e-06	k: 0	n:1060000
Cons ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
TP53   1060000 perm   1353 sec   (783 perm/sec)   p_kst 9.433962e-07   p_cons 9.433962e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.447545e-06	k: 0	n:1070000
Cons ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
TP53   1070000 perm   1371 sec   (781 perm/sec)   p_kst 9.345794e-07   p_cons 9.345794e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.415623e-06	k: 0	n:1080000
Cons ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
TP53   1080000 perm   1388 sec   (778 perm/sec)   p_kst 9.259259e-07   p_cons 9.259259e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.384287e-06	k: 0	n:1090000
Cons ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
TP53   1090000 perm   1406 sec   (775 perm/sec)   p_kst 9.174312e-07   p_cons 9.174312e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.353521e-06	k: 0	n:1100000
Cons ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
TP53   1100000 perm   1423 sec   (773 perm/sec)   p_kst 9.090909e-07   p_cons 9.090909e-07   p_joint 0

Joint ci ratio: 3.919996e+00	ci left: 0	ci right 3.323309e-06	k: 0	n:1110000
Cons ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
TP53   1110000 perm   1441 sec   (770 perm/sec)   p_kst 9.009009e-07   p_cons 9.009009e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.293637e-06	k: 0	n:1120000
Cons ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
TP53   1120000 perm   1460 sec   (767 perm/sec)   p_kst 8.928571e-07   p_cons 8.928571e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.264490e-06	k: 0	n:1130000
Cons ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
TP53   1130000 perm   1478 sec   (765 perm/sec)   p_kst 8.849558e-07   p_cons 8.849558e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.235854e-06	k: 0	n:1140000
Cons ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
TP53   1140000 perm   1495 sec   (762 perm/sec)   p_kst 8.771930e-07   p_cons 8.771930e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.207716e-06	k: 0	n:1150000
Cons ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
TP53   1150000 perm   1513 sec   (760 perm/sec)   p_kst 8.695652e-07   p_cons 8.695652e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.180063e-06	k: 0	n:1160000
Cons ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
TP53   1160000 perm   1531 sec   (757 perm/sec)   p_kst 8.620690e-07   p_cons 8.620690e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.152883e-06	k: 0	n:1170000
Cons ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
TP53   1170000 perm   1549 sec   (755 perm/sec)   p_kst 8.547009e-07   p_cons 8.547009e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.126164e-06	k: 0	n:1180000
Cons ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
TP53   1180000 perm   1567 sec   (753 perm/sec)   p_kst 8.474576e-07   p_cons 8.474576e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.099894e-06	k: 0	n:1190000
Cons ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
TP53   1190000 perm   1586 sec   (750 perm/sec)   p_kst 8.403361e-07   p_cons 8.403361e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.074061e-06	k: 0	n:1200000
Cons ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
TP53   1200000 perm   1604 sec   (748 perm/sec)   p_kst 8.333333e-07   p_cons 8.333333e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.048656e-06	k: 0	n:1210000
Cons ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
TP53   1210000 perm   1623 sec   (746 perm/sec)   p_kst 8.264463e-07   p_cons 8.264463e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 3.023667e-06	k: 0	n:1220000
Cons ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
TP53   1220000 perm   1641 sec   (743 perm/sec)   p_kst 8.196721e-07   p_cons 8.196721e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.999084e-06	k: 0	n:1230000
Cons ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
TP53   1230000 perm   1660 sec   (741 perm/sec)   p_kst 8.130081e-07   p_cons 8.130081e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.974898e-06	k: 0	n:1240000
Cons ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
TP53   1240000 perm   1679 sec   (739 perm/sec)   p_kst 8.064516e-07   p_cons 8.064516e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.951099e-06	k: 0	n:1250000
Cons ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
TP53   1250000 perm   1698 sec   (736 perm/sec)   p_kst 8.000000e-07   p_cons 8.000000e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.927678e-06	k: 0	n:1260000
Cons ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
TP53   1260000 perm   1718 sec   (734 perm/sec)   p_kst 7.936508e-07   p_cons 7.936508e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.904625e-06	k: 0	n:1270000
Cons ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
TP53   1270000 perm   1737 sec   (731 perm/sec)   p_kst 7.874016e-07   p_cons 7.874016e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.881933e-06	k: 0	n:1280000
Cons ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
TP53   1280000 perm   1756 sec   (729 perm/sec)   p_kst 7.812500e-07   p_cons 7.812500e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.859592e-06	k: 0	n:1290000
Cons ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
TP53   1290000 perm   1775 sec   (727 perm/sec)   p_kst 7.751938e-07   p_cons 7.751938e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.837596e-06	k: 0	n:1300000
Cons ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
TP53   1300000 perm   1794 sec   (725 perm/sec)   p_kst 7.692308e-07   p_cons 7.692308e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.815935e-06	k: 0	n:1310000
Cons ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
TP53   1310000 perm   1813 sec   (722 perm/sec)   p_kst 7.633588e-07   p_cons 7.633588e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.794602e-06	k: 0	n:1320000
Cons ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
TP53   1320000 perm   1833 sec   (720 perm/sec)   p_kst 7.575758e-07   p_cons 7.575758e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.773590e-06	k: 0	n:1330000
Cons ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
TP53   1330000 perm   1854 sec   (717 perm/sec)   p_kst 7.518797e-07   p_cons 7.518797e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.752891e-06	k: 0	n:1340000
Cons ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
TP53   1340000 perm   1874 sec   (715 perm/sec)   p_kst 7.462687e-07   p_cons 7.462687e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.732500e-06	k: 0	n:1350000
Cons ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
TP53   1350000 perm   1893 sec   (713 perm/sec)   p_kst 7.407407e-07   p_cons 7.407407e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.712408e-06	k: 0	n:1360000
Cons ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
TP53   1360000 perm   1913 sec   (711 perm/sec)   p_kst 7.352941e-07   p_cons 7.352941e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.692609e-06	k: 0	n:1370000
Cons ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
TP53   1370000 perm   1933 sec   (709 perm/sec)   p_kst 7.299270e-07   p_cons 7.299270e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.673097e-06	k: 0	n:1380000
Cons ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
TP53   1380000 perm   1953 sec   (707 perm/sec)   p_kst 7.246377e-07   p_cons 7.246377e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.653867e-06	k: 0	n:1390000
Cons ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
TP53   1390000 perm   1973 sec   (705 perm/sec)   p_kst 7.194245e-07   p_cons 7.194245e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.634910e-06	k: 0	n:1400000
Cons ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
TP53   1400000 perm   1993 sec   (702 perm/sec)   p_kst 7.142857e-07   p_cons 7.142857e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.616223e-06	k: 0	n:1410000
Cons ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
TP53   1410000 perm   2013 sec   (700 perm/sec)   p_kst 7.092199e-07   p_cons 7.092199e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.597799e-06	k: 0	n:1420000
Cons ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
TP53   1420000 perm   2034 sec   (698 perm/sec)   p_kst 7.042254e-07   p_cons 7.042254e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.579633e-06	k: 0	n:1430000
Cons ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
TP53   1430000 perm   2054 sec   (696 perm/sec)   p_kst 6.993007e-07   p_cons 6.993007e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.561719e-06	k: 0	n:1440000
Cons ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
TP53   1440000 perm   2075 sec   (694 perm/sec)   p_kst 6.944444e-07   p_cons 6.944444e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.544052e-06	k: 0	n:1450000
Cons ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
TP53   1450000 perm   2095 sec   (692 perm/sec)   p_kst 6.896552e-07   p_cons 6.896552e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.526627e-06	k: 0	n:1460000
Cons ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
TP53   1460000 perm   2116 sec   (690 perm/sec)   p_kst 6.849315e-07   p_cons 6.849315e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.509439e-06	k: 0	n:1470000
Cons ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
TP53   1470000 perm   2137 sec   (688 perm/sec)   p_kst 6.802721e-07   p_cons 6.802721e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.492483e-06	k: 0	n:1480000
Cons ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
TP53   1480000 perm   2158 sec   (686 perm/sec)   p_kst 6.756757e-07   p_cons 6.756757e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.475755e-06	k: 0	n:1490000
Cons ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
TP53   1490000 perm   2179 sec   (684 perm/sec)   p_kst 6.711409e-07   p_cons 6.711409e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.459250e-06	k: 0	n:1500000
Cons ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
TP53   1500000 perm   2200 sec   (682 perm/sec)   p_kst 6.666667e-07   p_cons 6.666667e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.442964e-06	k: 0	n:1510000
Cons ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
TP53   1510000 perm   2221 sec   (680 perm/sec)   p_kst 6.622517e-07   p_cons 6.622517e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.426891e-06	k: 0	n:1520000
Cons ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
TP53   1520000 perm   2242 sec   (678 perm/sec)   p_kst 6.578947e-07   p_cons 6.578947e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.411029e-06	k: 0	n:1530000
Cons ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
TP53   1530000 perm   2263 sec   (676 perm/sec)   p_kst 6.535948e-07   p_cons 6.535948e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.395373e-06	k: 0	n:1540000
Cons ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
TP53   1540000 perm   2285 sec   (674 perm/sec)   p_kst 6.493506e-07   p_cons 6.493506e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.379919e-06	k: 0	n:1550000
Cons ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
TP53   1550000 perm   2306 sec   (672 perm/sec)   p_kst 6.451613e-07   p_cons 6.451613e-07   p_joint 0

Joint ci ratio: 3.919997e+00	ci left: 0	ci right 2.364664e-06	k: 0	n:1560000
Cons ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
TP53   1560000 perm   2328 sec   (670 perm/sec)   p_kst 6.410256e-07   p_cons 6.410256e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.349602e-06	k: 0	n:1570000
Cons ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
TP53   1570000 perm   2350 sec   (668 perm/sec)   p_kst 6.369427e-07   p_cons 6.369427e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.334731e-06	k: 0	n:1580000
Cons ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
TP53   1580000 perm   2371 sec   (666 perm/sec)   p_kst 6.329114e-07   p_cons 6.329114e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.320047e-06	k: 0	n:1590000
Cons ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
TP53   1590000 perm   2393 sec   (665 perm/sec)   p_kst 6.289308e-07   p_cons 6.289308e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.305547e-06	k: 0	n:1600000
Cons ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
TP53   1600000 perm   2414 sec   (663 perm/sec)   p_kst 6.250000e-07   p_cons 6.250000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.291227e-06	k: 0	n:1610000
Cons ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
TP53   1610000 perm   2436 sec   (661 perm/sec)   p_kst 6.211180e-07   p_cons 6.211180e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.277083e-06	k: 0	n:1620000
Cons ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
TP53   1620000 perm   2458 sec   (659 perm/sec)   p_kst 6.172840e-07   p_cons 6.172840e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.263114e-06	k: 0	n:1630000
Cons ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
TP53   1630000 perm   2480 sec   (657 perm/sec)   p_kst 6.134969e-07   p_cons 6.134969e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.249314e-06	k: 0	n:1640000
Cons ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
TP53   1640000 perm   2502 sec   (655 perm/sec)   p_kst 6.097561e-07   p_cons 6.097561e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.235682e-06	k: 0	n:1650000
Cons ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
TP53   1650000 perm   2524 sec   (654 perm/sec)   p_kst 6.060606e-07   p_cons 6.060606e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.222214e-06	k: 0	n:1660000
Cons ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
TP53   1660000 perm   2547 sec   (652 perm/sec)   p_kst 6.024096e-07   p_cons 6.024096e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.208907e-06	k: 0	n:1670000
Cons ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
TP53   1670000 perm   2569 sec   (650 perm/sec)   p_kst 5.988024e-07   p_cons 5.988024e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.195759e-06	k: 0	n:1680000
Cons ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
TP53   1680000 perm   2592 sec   (648 perm/sec)   p_kst 5.952381e-07   p_cons 5.952381e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.182767e-06	k: 0	n:1690000
Cons ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
TP53   1690000 perm   2614 sec   (646 perm/sec)   p_kst 5.917160e-07   p_cons 5.917160e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.169927e-06	k: 0	n:1700000
Cons ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
TP53   1700000 perm   2637 sec   (645 perm/sec)   p_kst 5.882353e-07   p_cons 5.882353e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.157237e-06	k: 0	n:1710000
Cons ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
TP53   1710000 perm   2660 sec   (643 perm/sec)   p_kst 5.847953e-07   p_cons 5.847953e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.144695e-06	k: 0	n:1720000
Cons ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
KS ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
TP53   1720000 perm   2683 sec   (641 perm/sec)   p_kst 5.813953e-07   p_cons 5.813953e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.132298e-06	k: 0	n:1730000
Cons ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
KS ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
TP53   1730000 perm   2705 sec   (639 perm/sec)   p_kst 5.780347e-07   p_cons 5.780347e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.120043e-06	k: 0	n:1740000
Cons ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
KS ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
TP53   1740000 perm   2728 sec   (638 perm/sec)   p_kst 5.747126e-07   p_cons 5.747126e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.107929e-06	k: 0	n:1750000
Cons ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
KS ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
TP53   1750000 perm   2752 sec   (636 perm/sec)   p_kst 5.714286e-07   p_cons 5.714286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.095952e-06	k: 0	n:1760000
Cons ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
KS ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
TP53   1760000 perm   2774 sec   (634 perm/sec)   p_kst 5.681818e-07   p_cons 5.681818e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.084111e-06	k: 0	n:1770000
Cons ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
KS ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
TP53   1770000 perm   2798 sec   (633 perm/sec)   p_kst 5.649718e-07   p_cons 5.649718e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.072402e-06	k: 0	n:1780000
Cons ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
KS ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
TP53   1780000 perm   2821 sec   (631 perm/sec)   p_kst 5.617978e-07   p_cons 5.617978e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.060824e-06	k: 0	n:1790000
Cons ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
KS ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
TP53   1790000 perm   2845 sec   (629 perm/sec)   p_kst 5.586592e-07   p_cons 5.586592e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.049375e-06	k: 0	n:1800000
Cons ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
KS ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
TP53   1800000 perm   2869 sec   (627 perm/sec)   p_kst 5.555556e-07   p_cons 5.555556e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.038053e-06	k: 0	n:1810000
Cons ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
KS ci ratio: 2.771856e+00	ci left: 1.398774e-08	ci right 3.078252e-06	k: 1	n:1810000
TP53   1810000 perm   2893 sec   (626 perm/sec)   p_kst 5.524862e-07   p_cons 5.524862e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.026855e-06	k: 0	n:1820000
Cons ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
KS ci ratio: 2.771856e+00	ci left: 1.391088e-08	ci right 3.061339e-06	k: 1	n:1820000
TP53   1820000 perm   2916 sec   (624 perm/sec)   p_kst 5.494505e-07   p_cons 5.494505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.015779e-06	k: 0	n:1830000
Cons ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
KS ci ratio: 2.771856e+00	ci left: 1.383487e-08	ci right 3.044610e-06	k: 1	n:1830000
TP53   1830000 perm   2940 sec   (622 perm/sec)   p_kst 5.464481e-07   p_cons 5.464481e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 2.004824e-06	k: 0	n:1840000
Cons ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
KS ci ratio: 2.771856e+00	ci left: 1.375968e-08	ci right 3.028063e-06	k: 1	n:1840000
TP53   1840000 perm   2964 sec   (621 perm/sec)   p_kst 5.434783e-07   p_cons 5.434783e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.993987e-06	k: 0	n:1850000
Cons ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
KS ci ratio: 2.771856e+00	ci left: 1.368530e-08	ci right 3.011695e-06	k: 1	n:1850000
TP53   1850000 perm   2989 sec   (619 perm/sec)   p_kst 5.405405e-07   p_cons 5.405405e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.983267e-06	k: 0	n:1860000
Cons ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
KS ci ratio: 2.771856e+00	ci left: 1.361172e-08	ci right 2.995504e-06	k: 1	n:1860000
TP53   1860000 perm   3013 sec   (617 perm/sec)   p_kst 5.376344e-07   p_cons 5.376344e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.972661e-06	k: 0	n:1870000
Cons ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
KS ci ratio: 2.771856e+00	ci left: 1.353893e-08	ci right 2.979485e-06	k: 1	n:1870000
TP53   1870000 perm   3036 sec   (616 perm/sec)   p_kst 5.347594e-07   p_cons 5.347594e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.962168e-06	k: 0	n:1880000
Cons ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
KS ci ratio: 2.771856e+00	ci left: 1.346692e-08	ci right 2.963636e-06	k: 1	n:1880000
TP53   1880000 perm   3060 sec   (614 perm/sec)   p_kst 5.319149e-07   p_cons 5.319149e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.951786e-06	k: 0	n:1890000
Cons ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
KS ci ratio: 2.771856e+00	ci left: 1.339567e-08	ci right 2.947956e-06	k: 1	n:1890000
TP53   1890000 perm   3084 sec   (613 perm/sec)   p_kst 5.291005e-07   p_cons 5.291005e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.941514e-06	k: 0	n:1900000
Cons ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
KS ci ratio: 2.771856e+00	ci left: 1.332516e-08	ci right 2.932440e-06	k: 1	n:1900000
TP53   1900000 perm   3109 sec   (611 perm/sec)   p_kst 5.263158e-07   p_cons 5.263158e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.931349e-06	k: 0	n:1910000
Cons ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
KS ci ratio: 2.771856e+00	ci left: 1.325540e-08	ci right 2.917087e-06	k: 1	n:1910000
TP53   1910000 perm   3133 sec   (610 perm/sec)   p_kst 5.235602e-07   p_cons 5.235602e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.921290e-06	k: 0	n:1920000
Cons ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
KS ci ratio: 2.771856e+00	ci left: 1.318636e-08	ci right 2.901894e-06	k: 1	n:1920000
TP53   1920000 perm   3158 sec   (608 perm/sec)   p_kst 5.208333e-07   p_cons 5.208333e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.911335e-06	k: 0	n:1930000
Cons ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
KS ci ratio: 2.771856e+00	ci left: 1.311804e-08	ci right 2.886858e-06	k: 1	n:1930000
TP53   1930000 perm   3182 sec   (607 perm/sec)   p_kst 5.181347e-07   p_cons 5.181347e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.901482e-06	k: 0	n:1940000
Cons ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
KS ci ratio: 2.771856e+00	ci left: 1.305042e-08	ci right 2.871978e-06	k: 1	n:1940000
TP53   1940000 perm   3208 sec   (605 perm/sec)   p_kst 5.154639e-07   p_cons 5.154639e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.891731e-06	k: 0	n:1950000
Cons ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
KS ci ratio: 2.771856e+00	ci left: 1.298349e-08	ci right 2.857250e-06	k: 1	n:1950000
TP53   1950000 perm   3232 sec   (603 perm/sec)   p_kst 5.128205e-07   p_cons 5.128205e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.882080e-06	k: 0	n:1960000
Cons ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
KS ci ratio: 2.771856e+00	ci left: 1.291725e-08	ci right 2.842672e-06	k: 1	n:1960000
TP53   1960000 perm   3257 sec   (602 perm/sec)   p_kst 5.102041e-07   p_cons 5.102041e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.872526e-06	k: 0	n:1970000
Cons ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
KS ci ratio: 2.771856e+00	ci left: 1.285168e-08	ci right 2.828242e-06	k: 1	n:1970000
TP53   1970000 perm   3281 sec   (600 perm/sec)   p_kst 5.076142e-07   p_cons 5.076142e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.863069e-06	k: 0	n:1980000
Cons ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
KS ci ratio: 2.771856e+00	ci left: 1.278677e-08	ci right 2.813958e-06	k: 1	n:1980000
TP53   1980000 perm   3306 sec   (599 perm/sec)   p_kst 5.050505e-07   p_cons 5.050505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.853707e-06	k: 0	n:1990000
Cons ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
KS ci ratio: 2.771856e+00	ci left: 1.272252e-08	ci right 2.799818e-06	k: 1	n:1990000
TP53   1990000 perm   3331 sec   (597 perm/sec)   p_kst 5.025126e-07   p_cons 5.025126e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.844438e-06	k: 0	n:2000000
Cons ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
KS ci ratio: 2.771857e+00	ci left: 1.265890e-08	ci right 2.785819e-06	k: 1	n:2000000
TP53   2000000 perm   3357 sec   (596 perm/sec)   p_kst 5.000000e-07   p_cons 5.000000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.835262e-06	k: 0	n:2010000
Cons ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
KS ci ratio: 2.771857e+00	ci left: 1.259592e-08	ci right 2.771959e-06	k: 1	n:2010000
TP53   2010000 perm   3382 sec   (594 perm/sec)   p_kst 4.975124e-07   p_cons 4.975124e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.826176e-06	k: 0	n:2020000
Cons ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
KS ci ratio: 2.771857e+00	ci left: 1.253357e-08	ci right 2.758236e-06	k: 1	n:2020000
TP53   2020000 perm   3407 sec   (593 perm/sec)   p_kst 4.950495e-07   p_cons 4.950495e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.817180e-06	k: 0	n:2030000
Cons ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
KS ci ratio: 2.771857e+00	ci left: 1.247183e-08	ci right 2.744649e-06	k: 1	n:2030000
TP53   2030000 perm   3433 sec   (591 perm/sec)   p_kst 4.926108e-07   p_cons 4.926108e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.808273e-06	k: 0	n:2040000
Cons ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
KS ci ratio: 2.771857e+00	ci left: 1.241069e-08	ci right 2.731195e-06	k: 1	n:2040000
TP53   2040000 perm   3458 sec   (590 perm/sec)   p_kst 4.901961e-07   p_cons 4.901961e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.799452e-06	k: 0	n:2050000
Cons ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
KS ci ratio: 2.771857e+00	ci left: 1.235015e-08	ci right 2.717872e-06	k: 1	n:2050000
TP53   2050000 perm   3484 sec   (588 perm/sec)   p_kst 4.878049e-07   p_cons 4.878049e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.790717e-06	k: 0	n:2060000
Cons ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
KS ci ratio: 2.771857e+00	ci left: 1.229020e-08	ci right 2.704678e-06	k: 1	n:2060000
TP53   2060000 perm   3509 sec   (587 perm/sec)   p_kst 4.854369e-07   p_cons 4.854369e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.782066e-06	k: 0	n:2070000
Cons ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
KS ci ratio: 2.771857e+00	ci left: 1.223083e-08	ci right 2.691612e-06	k: 1	n:2070000
TP53   2070000 perm   3535 sec   (586 perm/sec)   p_kst 4.830918e-07   p_cons 4.830918e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.773498e-06	k: 0	n:2080000
Cons ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
KS ci ratio: 2.771857e+00	ci left: 1.217202e-08	ci right 2.678672e-06	k: 1	n:2080000
TP53   2080000 perm   3561 sec   (584 perm/sec)   p_kst 4.807692e-07   p_cons 4.807692e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.765013e-06	k: 0	n:2090000
Cons ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
KS ci ratio: 2.771857e+00	ci left: 1.211378e-08	ci right 2.665855e-06	k: 1	n:2090000
TP53   2090000 perm   3587 sec   (583 perm/sec)   p_kst 4.784689e-07   p_cons 4.784689e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.756608e-06	k: 0	n:2100000
Cons ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
KS ci ratio: 2.771857e+00	ci left: 1.205610e-08	ci right 2.653161e-06	k: 1	n:2100000
TP53   2100000 perm   3613 sec   (581 perm/sec)   p_kst 4.761905e-07   p_cons 4.761905e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.748283e-06	k: 0	n:2110000
Cons ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
KS ci ratio: 2.771857e+00	ci left: 1.199896e-08	ci right 2.640586e-06	k: 1	n:2110000
TP53   2110000 perm   3639 sec   (580 perm/sec)   p_kst 4.739336e-07   p_cons 4.739336e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.740036e-06	k: 0	n:2120000
Cons ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
KS ci ratio: 2.771857e+00	ci left: 1.194236e-08	ci right 2.628131e-06	k: 1	n:2120000
TP53   2120000 perm   3665 sec   (578 perm/sec)   p_kst 4.716981e-07   p_cons 4.716981e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.731867e-06	k: 0	n:2130000
Cons ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
KS ci ratio: 2.771857e+00	ci left: 1.188629e-08	ci right 2.615792e-06	k: 1	n:2130000
TP53   2130000 perm   3691 sec   (577 perm/sec)   p_kst 4.694836e-07   p_cons 4.694836e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.723774e-06	k: 0	n:2140000
Cons ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
KS ci ratio: 2.771857e+00	ci left: 1.183075e-08	ci right 2.603569e-06	k: 1	n:2140000
TP53   2140000 perm   3718 sec   (576 perm/sec)   p_kst 4.672897e-07   p_cons 4.672897e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.715756e-06	k: 0	n:2150000
Cons ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
KS ci ratio: 2.771857e+00	ci left: 1.177572e-08	ci right 2.591459e-06	k: 1	n:2150000
TP53   2150000 perm   3744 sec   (574 perm/sec)   p_kst 4.651163e-07   p_cons 4.651163e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.707813e-06	k: 0	n:2160000
Cons ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
KS ci ratio: 2.771857e+00	ci left: 1.172121e-08	ci right 2.579462e-06	k: 1	n:2160000
TP53   2160000 perm   3771 sec   (573 perm/sec)   p_kst 4.629630e-07   p_cons 4.629630e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.699943e-06	k: 0	n:2170000
Cons ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
KS ci ratio: 2.771857e+00	ci left: 1.166719e-08	ci right 2.567575e-06	k: 1	n:2170000
TP53   2170000 perm   3797 sec   (571 perm/sec)   p_kst 4.608295e-07   p_cons 4.608295e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.692145e-06	k: 0	n:2180000
Cons ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
KS ci ratio: 2.771857e+00	ci left: 1.161367e-08	ci right 2.555797e-06	k: 1	n:2180000
TP53   2180000 perm   3824 sec   (570 perm/sec)   p_kst 4.587156e-07   p_cons 4.587156e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.684418e-06	k: 0	n:2190000
Cons ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
KS ci ratio: 2.771857e+00	ci left: 1.156064e-08	ci right 2.544127e-06	k: 1	n:2190000
TP53   2190000 perm   3850 sec   (569 perm/sec)   p_kst 4.566210e-07   p_cons 4.566210e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.676762e-06	k: 0	n:2200000
Cons ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
KS ci ratio: 2.771857e+00	ci left: 1.150809e-08	ci right 2.532563e-06	k: 1	n:2200000
TP53   2200000 perm   3877 sec   (568 perm/sec)   p_kst 4.545455e-07   p_cons 4.545455e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.669175e-06	k: 0	n:2210000
Cons ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
KS ci ratio: 2.771857e+00	ci left: 1.145602e-08	ci right 2.521103e-06	k: 1	n:2210000
TP53   2210000 perm   3903 sec   (566 perm/sec)   p_kst 4.524887e-07   p_cons 4.524887e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.661656e-06	k: 0	n:2220000
Cons ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
KS ci ratio: 2.771857e+00	ci left: 1.140442e-08	ci right 2.509747e-06	k: 1	n:2220000
TP53   2220000 perm   3930 sec   (565 perm/sec)   p_kst 4.504505e-07   p_cons 4.504505e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.654205e-06	k: 0	n:2230000
Cons ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
KS ci ratio: 2.771857e+00	ci left: 1.135328e-08	ci right 2.498492e-06	k: 1	n:2230000
TP53   2230000 perm   3957 sec   (564 perm/sec)   p_kst 4.484305e-07   p_cons 4.484305e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.646820e-06	k: 0	n:2240000
Cons ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
KS ci ratio: 2.771857e+00	ci left: 1.130259e-08	ci right 2.487338e-06	k: 1	n:2240000
TP53   2240000 perm   3984 sec   (562 perm/sec)   p_kst 4.464286e-07   p_cons 4.464286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.639501e-06	k: 0	n:2250000
Cons ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
KS ci ratio: 2.771857e+00	ci left: 1.125236e-08	ci right 2.476283e-06	k: 1	n:2250000
TP53   2250000 perm   4012 sec   (561 perm/sec)   p_kst 4.444444e-07   p_cons 4.444444e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.632246e-06	k: 0	n:2260000
Cons ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
KS ci ratio: 2.771857e+00	ci left: 1.120257e-08	ci right 2.465326e-06	k: 1	n:2260000
TP53   2260000 perm   4039 sec   (560 perm/sec)   p_kst 4.424779e-07   p_cons 4.424779e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.625056e-06	k: 0	n:2270000
Cons ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
KS ci ratio: 2.771857e+00	ci left: 1.115322e-08	ci right 2.454466e-06	k: 1	n:2270000
TP53   2270000 perm   4067 sec   (558 perm/sec)   p_kst 4.405286e-07   p_cons 4.405286e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.617928e-06	k: 0	n:2280000
Cons ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
KS ci ratio: 2.771857e+00	ci left: 1.110430e-08	ci right 2.443701e-06	k: 1	n:2280000
TP53   2280000 perm   4094 sec   (557 perm/sec)   p_kst 4.385965e-07   p_cons 4.385965e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.610863e-06	k: 0	n:2290000
Cons ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
KS ci ratio: 2.771857e+00	ci left: 1.105581e-08	ci right 2.433030e-06	k: 1	n:2290000
TP53   2290000 perm   4121 sec   (556 perm/sec)   p_kst 4.366812e-07   p_cons 4.366812e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.603859e-06	k: 0	n:2300000
Cons ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
KS ci ratio: 2.771857e+00	ci left: 1.100774e-08	ci right 2.422451e-06	k: 1	n:2300000
TP53   2300000 perm   4149 sec   (554 perm/sec)   p_kst 4.347826e-07   p_cons 4.347826e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.596916e-06	k: 0	n:2310000
Cons ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
KS ci ratio: 2.771857e+00	ci left: 1.096009e-08	ci right 2.411964e-06	k: 1	n:2310000
TP53   2310000 perm   4176 sec   (553 perm/sec)   p_kst 4.329004e-07   p_cons 4.329004e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.590033e-06	k: 0	n:2320000
Cons ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
KS ci ratio: 2.771857e+00	ci left: 1.091285e-08	ci right 2.401568e-06	k: 1	n:2320000
TP53   2320000 perm   4204 sec   (552 perm/sec)   p_kst 4.310345e-07   p_cons 4.310345e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.583209e-06	k: 0	n:2330000
Cons ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
KS ci ratio: 2.771857e+00	ci left: 1.086601e-08	ci right 2.391261e-06	k: 1	n:2330000
TP53   2330000 perm   4232 sec   (551 perm/sec)   p_kst 4.291845e-07   p_cons 4.291845e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.576443e-06	k: 0	n:2340000
Cons ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
KS ci ratio: 2.771857e+00	ci left: 1.081958e-08	ci right 2.381042e-06	k: 1	n:2340000
TP53   2340000 perm   4260 sec   (549 perm/sec)   p_kst 4.273504e-07   p_cons 4.273504e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.569735e-06	k: 0	n:2350000
Cons ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
KS ci ratio: 2.771857e+00	ci left: 1.077354e-08	ci right 2.370910e-06	k: 1	n:2350000
TP53   2350000 perm   4287 sec   (548 perm/sec)   p_kst 4.255319e-07   p_cons 4.255319e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.563083e-06	k: 0	n:2360000
Cons ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
KS ci ratio: 2.771857e+00	ci left: 1.072788e-08	ci right 2.360864e-06	k: 1	n:2360000
TP53   2360000 perm   4315 sec   (547 perm/sec)   p_kst 4.237288e-07   p_cons 4.237288e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.556488e-06	k: 0	n:2370000
Cons ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
KS ci ratio: 2.771857e+00	ci left: 1.068262e-08	ci right 2.350902e-06	k: 1	n:2370000
TP53   2370000 perm   4343 sec   (546 perm/sec)   p_kst 4.219409e-07   p_cons 4.219409e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.549948e-06	k: 0	n:2380000
Cons ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
KS ci ratio: 2.771857e+00	ci left: 1.063773e-08	ci right 2.341024e-06	k: 1	n:2380000
TP53   2380000 perm   4371 sec   (544 perm/sec)   p_kst 4.201681e-07   p_cons 4.201681e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.543463e-06	k: 0	n:2390000
Cons ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
KS ci ratio: 2.771857e+00	ci left: 1.059323e-08	ci right 2.331229e-06	k: 1	n:2390000
TP53   2390000 perm   4400 sec   (543 perm/sec)   p_kst 4.184100e-07   p_cons 4.184100e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.537032e-06	k: 0	n:2400000
Cons ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
KS ci ratio: 2.771857e+00	ci left: 1.054909e-08	ci right 2.321516e-06	k: 1	n:2400000
TP53   2400000 perm   4428 sec   (542 perm/sec)   p_kst 4.166667e-07   p_cons 4.166667e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.530654e-06	k: 0	n:2410000
Cons ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
KS ci ratio: 2.771857e+00	ci left: 1.050531e-08	ci right 2.311883e-06	k: 1	n:2410000
TP53   2410000 perm   4457 sec   (541 perm/sec)   p_kst 4.149378e-07   p_cons 4.149378e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.524329e-06	k: 0	n:2420000
Cons ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
KS ci ratio: 2.771857e+00	ci left: 1.046190e-08	ci right 2.302330e-06	k: 1	n:2420000
TP53   2420000 perm   4486 sec   (540 perm/sec)   p_kst 4.132231e-07   p_cons 4.132231e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.518056e-06	k: 0	n:2430000
Cons ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
KS ci ratio: 2.771857e+00	ci left: 1.041885e-08	ci right 2.292855e-06	k: 1	n:2430000
TP53   2430000 perm   4514 sec   (538 perm/sec)   p_kst 4.115226e-07   p_cons 4.115226e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.511835e-06	k: 0	n:2440000
Cons ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
KS ci ratio: 2.771857e+00	ci left: 1.037615e-08	ci right 2.283458e-06	k: 1	n:2440000
TP53   2440000 perm   4543 sec   (537 perm/sec)   p_kst 4.098361e-07   p_cons 4.098361e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.505664e-06	k: 0	n:2450000
Cons ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
KS ci ratio: 2.771857e+00	ci left: 1.033380e-08	ci right 2.274138e-06	k: 1	n:2450000
TP53   2450000 perm   4572 sec   (536 perm/sec)   p_kst 4.081633e-07   p_cons 4.081633e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.499543e-06	k: 0	n:2460000
Cons ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
KS ci ratio: 2.771857e+00	ci left: 1.029179e-08	ci right 2.264894e-06	k: 1	n:2460000
TP53   2460000 perm   4601 sec   (535 perm/sec)   p_kst 4.065041e-07   p_cons 4.065041e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.493472e-06	k: 0	n:2470000
Cons ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
KS ci ratio: 2.771857e+00	ci left: 1.025012e-08	ci right 2.255724e-06	k: 1	n:2470000
TP53   2470000 perm   4630 sec   (533 perm/sec)   p_kst 4.048583e-07   p_cons 4.048583e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.487450e-06	k: 0	n:2480000
Cons ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
KS ci ratio: 2.771857e+00	ci left: 1.020879e-08	ci right 2.246628e-06	k: 1	n:2480000
TP53   2480000 perm   4659 sec   (532 perm/sec)   p_kst 4.032258e-07   p_cons 4.032258e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.481477e-06	k: 0	n:2490000
Cons ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
KS ci ratio: 2.771857e+00	ci left: 1.016779e-08	ci right 2.237606e-06	k: 1	n:2490000
TP53   2490000 perm   4688 sec   (531 perm/sec)   p_kst 4.016064e-07   p_cons 4.016064e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.475551e-06	k: 0	n:2500000
Cons ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
KS ci ratio: 2.771857e+00	ci left: 1.012712e-08	ci right 2.228655e-06	k: 1	n:2500000
TP53   2500000 perm   4717 sec   (530 perm/sec)   p_kst 4.000000e-07   p_cons 4.000000e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.469672e-06	k: 0	n:2510000
Cons ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
KS ci ratio: 2.771857e+00	ci left: 1.008678e-08	ci right 2.219776e-06	k: 1	n:2510000
TP53   2510000 perm   4747 sec   (529 perm/sec)   p_kst 3.984064e-07   p_cons 3.984064e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.463840e-06	k: 0	n:2520000
Cons ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
KS ci ratio: 2.771857e+00	ci left: 1.004675e-08	ci right 2.210968e-06	k: 1	n:2520000
TP53   2520000 perm   4776 sec   (528 perm/sec)   p_kst 3.968254e-07   p_cons 3.968254e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.458054e-06	k: 0	n:2530000
Cons ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
KS ci ratio: 2.771857e+00	ci left: 1.000704e-08	ci right 2.202229e-06	k: 1	n:2530000
TP53   2530000 perm   4806 sec   (526 perm/sec)   p_kst 3.952569e-07   p_cons 3.952569e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.452314e-06	k: 0	n:2540000
Cons ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
KS ci ratio: 2.771857e+00	ci left: 9.967641e-09	ci right 2.193558e-06	k: 1	n:2540000
TP53   2540000 perm   4835 sec   (525 perm/sec)   p_kst 3.937008e-07   p_cons 3.937008e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.446618e-06	k: 0	n:2550000
Cons ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
KS ci ratio: 2.771857e+00	ci left: 9.928552e-09	ci right 2.184956e-06	k: 1	n:2550000
TP53   2550000 perm   4865 sec   (524 perm/sec)   p_kst 3.921569e-07   p_cons 3.921569e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.440968e-06	k: 0	n:2560000
Cons ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
KS ci ratio: 2.771857e+00	ci left: 9.889769e-09	ci right 2.176421e-06	k: 1	n:2560000
TP53   2560000 perm   4896 sec   (523 perm/sec)   p_kst 3.906250e-07   p_cons 3.906250e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.435361e-06	k: 0	n:2570000
Cons ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
KS ci ratio: 2.771857e+00	ci left: 9.851287e-09	ci right 2.167953e-06	k: 1	n:2570000
TP53   2570000 perm   4926 sec   (522 perm/sec)   p_kst 3.891051e-07   p_cons 3.891051e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.429797e-06	k: 0	n:2580000
Cons ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
KS ci ratio: 2.771857e+00	ci left: 9.813104e-09	ci right 2.159550e-06	k: 1	n:2580000
TP53   2580000 perm   4957 sec   (521 perm/sec)   p_kst 3.875969e-07   p_cons 3.875969e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.424277e-06	k: 0	n:2590000
Cons ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
KS ci ratio: 2.771857e+00	ci left: 9.775216e-09	ci right 2.151212e-06	k: 1	n:2590000
TP53   2590000 perm   4987 sec   (519 perm/sec)   p_kst 3.861004e-07   p_cons 3.861004e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.418799e-06	k: 0	n:2600000
Cons ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
KS ci ratio: 2.771857e+00	ci left: 9.737618e-09	ci right 2.142938e-06	k: 1	n:2600000
TP53   2600000 perm   5018 sec   (518 perm/sec)   p_kst 3.846154e-07   p_cons 3.846154e-07   p_joint 0

Joint ci ratio: 3.919998e+00	ci left: 0	ci right 1.413363e-06	k: 0	n:2610000
Cons ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
KS ci ratio: 2.771857e+00	ci left: 9.700310e-09	ci right 2.134727e-06	k: 1	n:2610000
TP53   2610000 perm   5048 sec   (517 perm/sec)   p_kst 3.831418e-07   p_cons 3.831418e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.407968e-06	k: 0	n:2620000
Cons ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
KS ci ratio: 2.771857e+00	ci left: 9.663285e-09	ci right 2.126580e-06	k: 1	n:2620000
TP53   2620000 perm   5080 sec   (516 perm/sec)   p_kst 3.816794e-07   p_cons 3.816794e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.402615e-06	k: 0	n:2630000
Cons ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
KS ci ratio: 2.771857e+00	ci left: 9.626543e-09	ci right 2.118494e-06	k: 1	n:2630000
TP53   2630000 perm   5111 sec   (515 perm/sec)   p_kst 3.802281e-07   p_cons 3.802281e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.397302e-06	k: 0	n:2640000
Cons ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
KS ci ratio: 2.771857e+00	ci left: 9.590079e-09	ci right 2.110469e-06	k: 1	n:2640000
TP53   2640000 perm   5142 sec   (513 perm/sec)   p_kst 3.787879e-07   p_cons 3.787879e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.392029e-06	k: 0	n:2650000
Cons ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
KS ci ratio: 2.771857e+00	ci left: 9.553890e-09	ci right 2.102505e-06	k: 1	n:2650000
TP53   2650000 perm   5173 sec   (512 perm/sec)   p_kst 3.773585e-07   p_cons 3.773585e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.386796e-06	k: 0	n:2660000
Cons ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
KS ci ratio: 2.771857e+00	ci left: 9.517973e-09	ci right 2.094601e-06	k: 1	n:2660000
TP53   2660000 perm   5205 sec   (511 perm/sec)   p_kst 3.759398e-07   p_cons 3.759398e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.381602e-06	k: 0	n:2670000
Cons ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
KS ci ratio: 2.771857e+00	ci left: 9.482325e-09	ci right 2.086756e-06	k: 1	n:2670000
TP53   2670000 perm   5236 sec   (510 perm/sec)   p_kst 3.745318e-07   p_cons 3.745318e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.376447e-06	k: 0	n:2680000
Cons ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
KS ci ratio: 2.771857e+00	ci left: 9.446943e-09	ci right 2.078970e-06	k: 1	n:2680000
TP53   2680000 perm   5267 sec   (509 perm/sec)   p_kst 3.731343e-07   p_cons 3.731343e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.371330e-06	k: 0	n:2690000
Cons ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
KS ci ratio: 2.771857e+00	ci left: 9.411825e-09	ci right 2.071241e-06	k: 1	n:2690000
TP53   2690000 perm   5299 sec   (508 perm/sec)   p_kst 3.717472e-07   p_cons 3.717472e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.366251e-06	k: 0	n:2700000
Cons ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
KS ci ratio: 2.771857e+00	ci left: 9.376966e-09	ci right 2.063570e-06	k: 1	n:2700000
TP53   2700000 perm   5331 sec   (506 perm/sec)   p_kst 3.703704e-07   p_cons 3.703704e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.361209e-06	k: 0	n:2710000
Cons ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
KS ci ratio: 2.771857e+00	ci left: 9.342365e-09	ci right 2.055955e-06	k: 1	n:2710000
TP53   2710000 perm   5362 sec   (505 perm/sec)   p_kst 3.690037e-07   p_cons 3.690037e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.356205e-06	k: 0	n:2720000
Cons ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
KS ci ratio: 2.771857e+00	ci left: 9.308018e-09	ci right 2.048397e-06	k: 1	n:2720000
TP53   2720000 perm   5394 sec   (504 perm/sec)   p_kst 3.676471e-07   p_cons 3.676471e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.351237e-06	k: 0	n:2730000
Cons ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
KS ci ratio: 2.771857e+00	ci left: 9.273922e-09	ci right 2.040893e-06	k: 1	n:2730000
TP53   2730000 perm   5427 sec   (503 perm/sec)   p_kst 3.663004e-07   p_cons 3.663004e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.346305e-06	k: 0	n:2740000
Cons ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
KS ci ratio: 2.771857e+00	ci left: 9.240076e-09	ci right 2.033445e-06	k: 1	n:2740000
TP53   2740000 perm   5459 sec   (502 perm/sec)   p_kst 3.649635e-07   p_cons 3.649635e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.341410e-06	k: 0	n:2750000
Cons ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
KS ci ratio: 2.771857e+00	ci left: 9.206476e-09	ci right 2.026050e-06	k: 1	n:2750000
TP53   2750000 perm   5491 sec   (501 perm/sec)   p_kst 3.636364e-07   p_cons 3.636364e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.336550e-06	k: 0	n:2760000
Cons ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
KS ci ratio: 2.771857e+00	ci left: 9.173119e-09	ci right 2.018710e-06	k: 1	n:2760000
TP53   2760000 perm   5525 sec   (500 perm/sec)   p_kst 3.623188e-07   p_cons 3.623188e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.331725e-06	k: 0	n:2770000
Cons ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
KS ci ratio: 2.771857e+00	ci left: 9.140003e-09	ci right 2.011422e-06	k: 1	n:2770000
TP53   2770000 perm   5558 sec   (498 perm/sec)   p_kst 3.610108e-07   p_cons 3.610108e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.326934e-06	k: 0	n:2780000
Cons ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
KS ci ratio: 2.771857e+00	ci left: 9.107125e-09	ci right 2.004187e-06	k: 1	n:2780000
TP53   2780000 perm   5590 sec   (497 perm/sec)   p_kst 3.597122e-07   p_cons 3.597122e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.322178e-06	k: 0	n:2790000
Cons ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
KS ci ratio: 2.771857e+00	ci left: 9.074483e-09	ci right 1.997003e-06	k: 1	n:2790000
TP53   2790000 perm   5622 sec   (496 perm/sec)   p_kst 3.584229e-07   p_cons 3.584229e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.317456e-06	k: 0	n:2800000
Cons ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
KS ci ratio: 2.771857e+00	ci left: 9.042074e-09	ci right 1.989871e-06	k: 1	n:2800000
TP53   2800000 perm   5654 sec   (495 perm/sec)   p_kst 3.571429e-07   p_cons 3.571429e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.312768e-06	k: 0	n:2810000
Cons ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
KS ci ratio: 2.771857e+00	ci left: 9.009896e-09	ci right 1.982790e-06	k: 1	n:2810000
TP53   2810000 perm   5686 sec   (494 perm/sec)   p_kst 3.558719e-07   p_cons 3.558719e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.308112e-06	k: 0	n:2820000
Cons ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
KS ci ratio: 2.771857e+00	ci left: 8.977946e-09	ci right 1.975758e-06	k: 1	n:2820000
TP53   2820000 perm   5718 sec   (493 perm/sec)   p_kst 3.546099e-07   p_cons 3.546099e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.303490e-06	k: 0	n:2830000
Cons ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
KS ci ratio: 2.771857e+00	ci left: 8.946222e-09	ci right 1.968777e-06	k: 1	n:2830000
TP53   2830000 perm   5751 sec   (492 perm/sec)   p_kst 3.533569e-07   p_cons 3.533569e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.298900e-06	k: 0	n:2840000
Cons ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
KS ci ratio: 2.771857e+00	ci left: 8.914721e-09	ci right 1.961845e-06	k: 1	n:2840000
TP53   2840000 perm   5784 sec   (491 perm/sec)   p_kst 3.521127e-07   p_cons 3.521127e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.294343e-06	k: 0	n:2850000
Cons ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
KS ci ratio: 2.771857e+00	ci left: 8.883441e-09	ci right 1.954961e-06	k: 1	n:2850000
TP53   2850000 perm   5817 sec   (490 perm/sec)   p_kst 3.508772e-07   p_cons 3.508772e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.289817e-06	k: 0	n:2860000
Cons ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
KS ci ratio: 2.771857e+00	ci left: 8.852380e-09	ci right 1.948126e-06	k: 1	n:2860000
TP53   2860000 perm   5851 sec   (489 perm/sec)   p_kst 3.496503e-07   p_cons 3.496503e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.285323e-06	k: 0	n:2870000
Cons ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
KS ci ratio: 2.771857e+00	ci left: 8.821536e-09	ci right 1.941338e-06	k: 1	n:2870000
TP53   2870000 perm   5884 sec   (488 perm/sec)   p_kst 3.484321e-07   p_cons 3.484321e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.280860e-06	k: 0	n:2880000
Cons ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
KS ci ratio: 2.771857e+00	ci left: 8.790905e-09	ci right 1.934597e-06	k: 1	n:2880000
TP53   2880000 perm   5917 sec   (487 perm/sec)   p_kst 3.472222e-07   p_cons 3.472222e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.276428e-06	k: 0	n:2890000
Cons ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
KS ci ratio: 2.771857e+00	ci left: 8.760487e-09	ci right 1.927903e-06	k: 1	n:2890000
TP53   2890000 perm   5951 sec   (486 perm/sec)   p_kst 3.460208e-07   p_cons 3.460208e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.272027e-06	k: 0	n:2900000
Cons ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
KS ci ratio: 2.771857e+00	ci left: 8.730279e-09	ci right 1.921255e-06	k: 1	n:2900000
TP53   2900000 perm   5983 sec   (485 perm/sec)   p_kst 3.448276e-07   p_cons 3.448276e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.267655e-06	k: 0	n:2910000
Cons ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
KS ci ratio: 2.771857e+00	ci left: 8.700278e-09	ci right 1.914653e-06	k: 1	n:2910000
TP53   2910000 perm   6017 sec   (484 perm/sec)   p_kst 3.436426e-07   p_cons 3.436426e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.263314e-06	k: 0	n:2920000
Cons ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
KS ci ratio: 2.771857e+00	ci left: 8.670482e-09	ci right 1.908096e-06	k: 1	n:2920000
TP53   2920000 perm   6051 sec   (483 perm/sec)   p_kst 3.424658e-07   p_cons 3.424658e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.259002e-06	k: 0	n:2930000
Cons ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
KS ci ratio: 2.771857e+00	ci left: 8.640890e-09	ci right 1.901583e-06	k: 1	n:2930000
TP53   2930000 perm   6084 sec   (482 perm/sec)   p_kst 3.412969e-07   p_cons 3.412969e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.254720e-06	k: 0	n:2940000
Cons ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
KS ci ratio: 2.771857e+00	ci left: 8.611499e-09	ci right 1.895115e-06	k: 1	n:2940000
TP53   2940000 perm   6123 sec   (480 perm/sec)   p_kst 3.401361e-07   p_cons 3.401361e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.250467e-06	k: 0	n:2950000
Cons ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
KS ci ratio: 2.771857e+00	ci left: 8.582308e-09	ci right 1.888691e-06	k: 1	n:2950000
TP53   2950000 perm   6157 sec   (479 perm/sec)   p_kst 3.389831e-07   p_cons 3.389831e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.246242e-06	k: 0	n:2960000
Cons ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
KS ci ratio: 2.771857e+00	ci left: 8.553313e-09	ci right 1.882311e-06	k: 1	n:2960000
TP53   2960000 perm   6191 sec   (478 perm/sec)   p_kst 3.378378e-07   p_cons 3.378378e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.242046e-06	k: 0	n:2970000
Cons ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
KS ci ratio: 2.771857e+00	ci left: 8.524514e-09	ci right 1.875973e-06	k: 1	n:2970000
TP53   2970000 perm   6224 sec   (477 perm/sec)   p_kst 3.367003e-07   p_cons 3.367003e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.237878e-06	k: 0	n:2980000
Cons ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
KS ci ratio: 2.771857e+00	ci left: 8.495909e-09	ci right 1.869678e-06	k: 1	n:2980000
TP53   2980000 perm   6259 sec   (476 perm/sec)   p_kst 3.355705e-07   p_cons 3.355705e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.233738e-06	k: 0	n:2990000
Cons ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
KS ci ratio: 2.771857e+00	ci left: 8.467494e-09	ci right 1.863424e-06	k: 1	n:2990000
TP53   2990000 perm   6294 sec   (475 perm/sec)   p_kst 3.344482e-07   p_cons 3.344482e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.229626e-06	k: 0	n:3000000
Cons ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
KS ci ratio: 2.771857e+00	ci left: 8.439269e-09	ci right 1.857213e-06	k: 1	n:3000000
TP53   3000000 perm   6327 sec   (474 perm/sec)   p_kst 3.333333e-07   p_cons 3.333333e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.225541e-06	k: 0	n:3010000
Cons ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
KS ci ratio: 2.771857e+00	ci left: 8.411232e-09	ci right 1.851043e-06	k: 1	n:3010000
TP53   3010000 perm   6361 sec   (473 perm/sec)   p_kst 3.322259e-07   p_cons 3.322259e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.221483e-06	k: 0	n:3020000
Cons ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
KS ci ratio: 2.771857e+00	ci left: 8.383380e-09	ci right 1.844914e-06	k: 1	n:3020000
TP53   3020000 perm   6396 sec   (472 perm/sec)   p_kst 3.311258e-07   p_cons 3.311258e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.217451e-06	k: 0	n:3030000
Cons ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
KS ci ratio: 2.771857e+00	ci left: 8.355712e-09	ci right 1.838825e-06	k: 1	n:3030000
TP53   3030000 perm   6431 sec   (471 perm/sec)   p_kst 3.300330e-07   p_cons 3.300330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.213446e-06	k: 0	n:3040000
Cons ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
KS ci ratio: 2.771857e+00	ci left: 8.328226e-09	ci right 1.832776e-06	k: 1	n:3040000
TP53   3040000 perm   6465 sec   (470 perm/sec)   p_kst 3.289474e-07   p_cons 3.289474e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.209468e-06	k: 0	n:3050000
Cons ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
KS ci ratio: 2.771857e+00	ci left: 8.300921e-09	ci right 1.826767e-06	k: 1	n:3050000
TP53   3050000 perm   6499 sec   (469 perm/sec)   p_kst 3.278689e-07   p_cons 3.278689e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.205515e-06	k: 0	n:3060000
Cons ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
KS ci ratio: 2.771857e+00	ci left: 8.273793e-09	ci right 1.820797e-06	k: 1	n:3060000
TP53   3060000 perm   6534 sec   (468 perm/sec)   p_kst 3.267974e-07   p_cons 3.267974e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.201589e-06	k: 0	n:3070000
Cons ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
KS ci ratio: 2.771857e+00	ci left: 8.246843e-09	ci right 1.814866e-06	k: 1	n:3070000
TP53   3070000 perm   6569 sec   (467 perm/sec)   p_kst 3.257329e-07   p_cons 3.257329e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.197687e-06	k: 0	n:3080000
Cons ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
KS ci ratio: 2.771857e+00	ci left: 8.220068e-09	ci right 1.808974e-06	k: 1	n:3080000
TP53   3080000 perm   6604 sec   (466 perm/sec)   p_kst 3.246753e-07   p_cons 3.246753e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.193811e-06	k: 0	n:3090000
Cons ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
KS ci ratio: 2.771857e+00	ci left: 8.193465e-09	ci right 1.803120e-06	k: 1	n:3090000
TP53   3090000 perm   6639 sec   (465 perm/sec)   p_kst 3.236246e-07   p_cons 3.236246e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.189960e-06	k: 0	n:3100000
Cons ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
KS ci ratio: 2.771857e+00	ci left: 8.167035e-09	ci right 1.797303e-06	k: 1	n:3100000
TP53   3100000 perm   6675 sec   (464 perm/sec)   p_kst 3.225806e-07   p_cons 3.225806e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.186134e-06	k: 0	n:3110000
Cons ci ratio: 2.771857e+00	ci left: 8.140774e-09	ci right 1.791524e-06	k: 1	n:3110000
KS ci ratio: 2.771857e+00	ci left: 8.140774e-09	ci right 1.791524e-06	k: 1	n:3110000
TP53   3110000 perm   6710 sec   (464 perm/sec)   p_kst 3.215434e-07   p_cons 3.215434e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.182332e-06	k: 0	n:3120000
Cons ci ratio: 2.771857e+00	ci left: 8.114682e-09	ci right 1.785782e-06	k: 1	n:3120000
KS ci ratio: 2.771857e+00	ci left: 8.114682e-09	ci right 1.785782e-06	k: 1	n:3120000
TP53   3120000 perm   6747 sec   (462 perm/sec)   p_kst 3.205128e-07   p_cons 3.205128e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.178555e-06	k: 0	n:3130000
Cons ci ratio: 2.771857e+00	ci left: 8.088757e-09	ci right 1.780076e-06	k: 1	n:3130000
KS ci ratio: 2.771857e+00	ci left: 8.088757e-09	ci right 1.780076e-06	k: 1	n:3130000
TP53   3130000 perm   6782 sec   (461 perm/sec)   p_kst 3.194888e-07   p_cons 3.194888e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.174802e-06	k: 0	n:3140000
Cons ci ratio: 2.771857e+00	ci left: 8.062996e-09	ci right 1.774407e-06	k: 1	n:3140000
KS ci ratio: 2.771857e+00	ci left: 8.062996e-09	ci right 1.774407e-06	k: 1	n:3140000
TP53   3140000 perm   6818 sec   (461 perm/sec)   p_kst 3.184713e-07   p_cons 3.184713e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.171072e-06	k: 0	n:3150000
Cons ci ratio: 2.771857e+00	ci left: 8.037399e-09	ci right 1.768774e-06	k: 1	n:3150000
KS ci ratio: 2.771857e+00	ci left: 8.037399e-09	ci right 1.768774e-06	k: 1	n:3150000
TP53   3150000 perm   6853 sec   (460 perm/sec)   p_kst 3.174603e-07   p_cons 3.174603e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.167366e-06	k: 0	n:3160000
Cons ci ratio: 2.771857e+00	ci left: 8.011965e-09	ci right 1.763177e-06	k: 1	n:3160000
KS ci ratio: 2.771857e+00	ci left: 8.011965e-09	ci right 1.763177e-06	k: 1	n:3160000
TP53   3160000 perm   6888 sec   (459 perm/sec)   p_kst 3.164557e-07   p_cons 3.164557e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.163684e-06	k: 0	n:3170000
Cons ci ratio: 2.771857e+00	ci left: 7.986690e-09	ci right 1.757615e-06	k: 1	n:3170000
KS ci ratio: 2.771857e+00	ci left: 7.986690e-09	ci right 1.757615e-06	k: 1	n:3170000
TP53   3170000 perm   6924 sec   (458 perm/sec)   p_kst 3.154574e-07   p_cons 3.154574e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.160024e-06	k: 0	n:3180000
Cons ci ratio: 2.771857e+00	ci left: 7.961575e-09	ci right 1.752088e-06	k: 1	n:3180000
KS ci ratio: 2.771857e+00	ci left: 7.961575e-09	ci right 1.752088e-06	k: 1	n:3180000
TP53   3180000 perm   6959 sec   (457 perm/sec)   p_kst 3.144654e-07   p_cons 3.144654e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.156388e-06	k: 0	n:3190000
Cons ci ratio: 2.771857e+00	ci left: 7.936617e-09	ci right 1.746595e-06	k: 1	n:3190000
KS ci ratio: 2.771857e+00	ci left: 7.936617e-09	ci right 1.746595e-06	k: 1	n:3190000
TP53   3190000 perm   6995 sec   (456 perm/sec)   p_kst 3.134796e-07   p_cons 3.134796e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.152774e-06	k: 0	n:3200000
Cons ci ratio: 2.771857e+00	ci left: 7.911815e-09	ci right 1.741137e-06	k: 1	n:3200000
KS ci ratio: 2.771857e+00	ci left: 7.911815e-09	ci right 1.741137e-06	k: 1	n:3200000
TP53   3200000 perm   7031 sec   (455 perm/sec)   p_kst 3.125000e-07   p_cons 3.125000e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.149183e-06	k: 0	n:3210000
Cons ci ratio: 2.771857e+00	ci left: 7.887168e-09	ci right 1.735713e-06	k: 1	n:3210000
KS ci ratio: 2.771857e+00	ci left: 7.887168e-09	ci right 1.735713e-06	k: 1	n:3210000
TP53   3210000 perm   7068 sec   (454 perm/sec)   p_kst 3.115265e-07   p_cons 3.115265e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.145614e-06	k: 0	n:3220000
Cons ci ratio: 2.771857e+00	ci left: 7.862673e-09	ci right 1.730323e-06	k: 1	n:3220000
KS ci ratio: 2.771857e+00	ci left: 7.862673e-09	ci right 1.730323e-06	k: 1	n:3220000
TP53   3220000 perm   7104 sec   (453 perm/sec)   p_kst 3.105590e-07   p_cons 3.105590e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.142067e-06	k: 0	n:3230000
Cons ci ratio: 2.771857e+00	ci left: 7.838331e-09	ci right 1.724966e-06	k: 1	n:3230000
KS ci ratio: 2.771857e+00	ci left: 7.838331e-09	ci right 1.724966e-06	k: 1	n:3230000
TP53   3230000 perm   7141 sec   (452 perm/sec)   p_kst 3.095975e-07   p_cons 3.095975e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.138542e-06	k: 0	n:3240000
Cons ci ratio: 2.771857e+00	ci left: 7.814138e-09	ci right 1.719642e-06	k: 1	n:3240000
KS ci ratio: 2.771857e+00	ci left: 7.814138e-09	ci right 1.719642e-06	k: 1	n:3240000
TP53   3240000 perm   7178 sec   (451 perm/sec)   p_kst 3.086420e-07   p_cons 3.086420e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.135039e-06	k: 0	n:3250000
Cons ci ratio: 2.771857e+00	ci left: 7.790095e-09	ci right 1.714351e-06	k: 1	n:3250000
KS ci ratio: 2.771857e+00	ci left: 7.790095e-09	ci right 1.714351e-06	k: 1	n:3250000
TP53   3250000 perm   7215 sec   (450 perm/sec)   p_kst 3.076923e-07   p_cons 3.076923e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.131557e-06	k: 0	n:3260000
Cons ci ratio: 2.771857e+00	ci left: 7.766199e-09	ci right 1.709092e-06	k: 1	n:3260000
KS ci ratio: 2.771857e+00	ci left: 7.766199e-09	ci right 1.709092e-06	k: 1	n:3260000
TP53   3260000 perm   7252 sec   (450 perm/sec)   p_kst 3.067485e-07   p_cons 3.067485e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.128097e-06	k: 0	n:3270000
Cons ci ratio: 2.771857e+00	ci left: 7.742449e-09	ci right 1.703865e-06	k: 1	n:3270000
KS ci ratio: 2.771857e+00	ci left: 7.742449e-09	ci right 1.703865e-06	k: 1	n:3270000
TP53   3270000 perm   7290 sec   (449 perm/sec)   p_kst 3.058104e-07   p_cons 3.058104e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.124658e-06	k: 0	n:3280000
Cons ci ratio: 2.771857e+00	ci left: 7.718844e-09	ci right 1.698671e-06	k: 1	n:3280000
KS ci ratio: 2.771857e+00	ci left: 7.718844e-09	ci right 1.698671e-06	k: 1	n:3280000
TP53   3280000 perm   7328 sec   (448 perm/sec)   p_kst 3.048780e-07   p_cons 3.048780e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.121239e-06	k: 0	n:3290000
Cons ci ratio: 2.771857e+00	ci left: 7.695382e-09	ci right 1.693507e-06	k: 1	n:3290000
KS ci ratio: 2.771857e+00	ci left: 7.695382e-09	ci right 1.693507e-06	k: 1	n:3290000
TP53   3290000 perm   7367 sec   (447 perm/sec)   p_kst 3.039514e-07   p_cons 3.039514e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.117842e-06	k: 0	n:3300000
Cons ci ratio: 2.771857e+00	ci left: 7.672063e-09	ci right 1.688376e-06	k: 1	n:3300000
KS ci ratio: 2.771857e+00	ci left: 7.672063e-09	ci right 1.688376e-06	k: 1	n:3300000
TP53   3300000 perm   7408 sec   (445 perm/sec)   p_kst 3.030303e-07   p_cons 3.030303e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.114464e-06	k: 0	n:3310000
Cons ci ratio: 2.771857e+00	ci left: 7.648885e-09	ci right 1.683275e-06	k: 1	n:3310000
KS ci ratio: 2.771857e+00	ci left: 7.648885e-09	ci right 1.683275e-06	k: 1	n:3310000
TP53   3310000 perm   7447 sec   (444 perm/sec)   p_kst 3.021148e-07   p_cons 3.021148e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.111108e-06	k: 0	n:3320000
Cons ci ratio: 2.771857e+00	ci left: 7.625846e-09	ci right 1.678205e-06	k: 1	n:3320000
KS ci ratio: 2.771857e+00	ci left: 7.625846e-09	ci right 1.678205e-06	k: 1	n:3320000
TP53   3320000 perm   7484 sec   (444 perm/sec)   p_kst 3.012048e-07   p_cons 3.012048e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.107771e-06	k: 0	n:3330000
Cons ci ratio: 2.771857e+00	ci left: 7.602945e-09	ci right 1.673165e-06	k: 1	n:3330000
KS ci ratio: 2.771857e+00	ci left: 7.602945e-09	ci right 1.673165e-06	k: 1	n:3330000
TP53   3330000 perm   7522 sec   (443 perm/sec)   p_kst 3.003003e-07   p_cons 3.003003e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.104454e-06	k: 0	n:3340000
Cons ci ratio: 2.771857e+00	ci left: 7.580182e-09	ci right 1.668156e-06	k: 1	n:3340000
KS ci ratio: 2.771857e+00	ci left: 7.580182e-09	ci right 1.668156e-06	k: 1	n:3340000
TP53   3340000 perm   7559 sec   (442 perm/sec)   p_kst 2.994012e-07   p_cons 2.994012e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.101157e-06	k: 0	n:3350000
Cons ci ratio: 2.771857e+00	ci left: 7.557555e-09	ci right 1.663176e-06	k: 1	n:3350000
KS ci ratio: 2.771857e+00	ci left: 7.557555e-09	ci right 1.663176e-06	k: 1	n:3350000
TP53   3350000 perm   7599 sec   (441 perm/sec)   p_kst 2.985075e-07   p_cons 2.985075e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.097880e-06	k: 0	n:3360000
Cons ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
KS ci ratio: 2.771857e+00	ci left: 7.535062e-09	ci right 1.658226e-06	k: 1	n:3360000
TP53   3360000 perm   7637 sec   (440 perm/sec)   p_kst 2.976190e-07   p_cons 2.976190e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.094622e-06	k: 0	n:3370000
Cons ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
KS ci ratio: 2.771857e+00	ci left: 7.512703e-09	ci right 1.653306e-06	k: 1	n:3370000
TP53   3370000 perm   7676 sec   (439 perm/sec)   p_kst 2.967359e-07   p_cons 2.967359e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.091384e-06	k: 0	n:3380000
Cons ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
KS ci ratio: 2.771857e+00	ci left: 7.490476e-09	ci right 1.648414e-06	k: 1	n:3380000
TP53   3380000 perm   7718 sec   (438 perm/sec)   p_kst 2.958580e-07   p_cons 2.958580e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.088164e-06	k: 0	n:3390000
Cons ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
KS ci ratio: 2.771857e+00	ci left: 7.468380e-09	ci right 1.643552e-06	k: 1	n:3390000
TP53   3390000 perm   7756 sec   (437 perm/sec)   p_kst 2.949853e-07   p_cons 2.949853e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.084964e-06	k: 0	n:3400000
Cons ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
KS ci ratio: 2.771857e+00	ci left: 7.446414e-09	ci right 1.638718e-06	k: 1	n:3400000
TP53   3400000 perm   7795 sec   (436 perm/sec)   p_kst 2.941176e-07   p_cons 2.941176e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.081782e-06	k: 0	n:3410000
Cons ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
KS ci ratio: 2.771857e+00	ci left: 7.424577e-09	ci right 1.633912e-06	k: 1	n:3410000
TP53   3410000 perm   7834 sec   (435 perm/sec)   p_kst 2.932551e-07   p_cons 2.932551e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.078619e-06	k: 0	n:3420000
Cons ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
KS ci ratio: 2.771857e+00	ci left: 7.402868e-09	ci right 1.629134e-06	k: 1	n:3420000
TP53   3420000 perm   7872 sec   (434 perm/sec)   p_kst 2.923977e-07   p_cons 2.923977e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.075474e-06	k: 0	n:3430000
Cons ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
KS ci ratio: 2.771857e+00	ci left: 7.381285e-09	ci right 1.624385e-06	k: 1	n:3430000
TP53   3430000 perm   7912 sec   (434 perm/sec)   p_kst 2.915452e-07   p_cons 2.915452e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.072348e-06	k: 0	n:3440000
Cons ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
KS ci ratio: 2.771857e+00	ci left: 7.359828e-09	ci right 1.619663e-06	k: 1	n:3440000
TP53   3440000 perm   7953 sec   (433 perm/sec)   p_kst 2.906977e-07   p_cons 2.906977e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.069240e-06	k: 0	n:3450000
Cons ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
KS ci ratio: 2.771857e+00	ci left: 7.338495e-09	ci right 1.614968e-06	k: 1	n:3450000
TP53   3450000 perm   7994 sec   (432 perm/sec)   p_kst 2.898551e-07   p_cons 2.898551e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.066150e-06	k: 0	n:3460000
Cons ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
KS ci ratio: 2.771857e+00	ci left: 7.317286e-09	ci right 1.610300e-06	k: 1	n:3460000
TP53   3460000 perm   8033 sec   (431 perm/sec)   p_kst 2.890173e-07   p_cons 2.890173e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.063077e-06	k: 0	n:3470000
Cons ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
KS ci ratio: 2.771857e+00	ci left: 7.296198e-09	ci right 1.605660e-06	k: 1	n:3470000
TP53   3470000 perm   8072 sec   (430 perm/sec)   p_kst 2.881844e-07   p_cons 2.881844e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.060022e-06	k: 0	n:3480000
Cons ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
KS ci ratio: 2.771857e+00	ci left: 7.275232e-09	ci right 1.601046e-06	k: 1	n:3480000
TP53   3480000 perm   8111 sec   (429 perm/sec)   p_kst 2.873563e-07   p_cons 2.873563e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.056985e-06	k: 0	n:3490000
Cons ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
KS ci ratio: 2.771857e+00	ci left: 7.254386e-09	ci right 1.596458e-06	k: 1	n:3490000
TP53   3490000 perm   8148 sec   (428 perm/sec)   p_kst 2.865330e-07   p_cons 2.865330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.053965e-06	k: 0	n:3500000
Cons ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
KS ci ratio: 2.771857e+00	ci left: 7.233659e-09	ci right 1.591897e-06	k: 1	n:3500000
TP53   3500000 perm   8187 sec   (427 perm/sec)   p_kst 2.857143e-07   p_cons 2.857143e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.050962e-06	k: 0	n:3510000
Cons ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
KS ci ratio: 2.771857e+00	ci left: 7.213051e-09	ci right 1.587362e-06	k: 1	n:3510000
TP53   3510000 perm   8226 sec   (427 perm/sec)   p_kst 2.849003e-07   p_cons 2.849003e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.047977e-06	k: 0	n:3520000
Cons ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
KS ci ratio: 2.771857e+00	ci left: 7.192559e-09	ci right 1.582852e-06	k: 1	n:3520000
TP53   3520000 perm   8268 sec   (426 perm/sec)   p_kst 2.840909e-07   p_cons 2.840909e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.045008e-06	k: 0	n:3530000
Cons ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
KS ci ratio: 2.771857e+00	ci left: 7.172184e-09	ci right 1.578368e-06	k: 1	n:3530000
TP53   3530000 perm   8307 sec   (425 perm/sec)   p_kst 2.832861e-07   p_cons 2.832861e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.042056e-06	k: 0	n:3540000
Cons ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
KS ci ratio: 2.771857e+00	ci left: 7.151923e-09	ci right 1.573910e-06	k: 1	n:3540000
TP53   3540000 perm   8347 sec   (424 perm/sec)   p_kst 2.824859e-07   p_cons 2.824859e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.039120e-06	k: 0	n:3550000
Cons ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
KS ci ratio: 2.771857e+00	ci left: 7.131777e-09	ci right 1.569476e-06	k: 1	n:3550000
TP53   3550000 perm   8386 sec   (423 perm/sec)   p_kst 2.816901e-07   p_cons 2.816901e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.036202e-06	k: 0	n:3560000
Cons ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
KS ci ratio: 2.771857e+00	ci left: 7.111744e-09	ci right 1.565067e-06	k: 1	n:3560000
TP53   3560000 perm   8425 sec   (423 perm/sec)   p_kst 2.808989e-07   p_cons 2.808989e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.033299e-06	k: 0	n:3570000
Cons ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
KS ci ratio: 2.771857e+00	ci left: 7.091823e-09	ci right 1.560683e-06	k: 1	n:3570000
TP53   3570000 perm   8464 sec   (422 perm/sec)   p_kst 2.801120e-07   p_cons 2.801120e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.030413e-06	k: 0	n:3580000
Cons ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
KS ci ratio: 2.771857e+00	ci left: 7.072013e-09	ci right 1.556324e-06	k: 1	n:3580000
TP53   3580000 perm   8504 sec   (421 perm/sec)   p_kst 2.793296e-07   p_cons 2.793296e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.027542e-06	k: 0	n:3590000
Cons ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
KS ci ratio: 2.771857e+00	ci left: 7.052314e-09	ci right 1.551989e-06	k: 1	n:3590000
TP53   3590000 perm   8544 sec   (420 perm/sec)   p_kst 2.785515e-07   p_cons 2.785515e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.024688e-06	k: 0	n:3600000
Cons ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
KS ci ratio: 2.771857e+00	ci left: 7.032724e-09	ci right 1.547678e-06	k: 1	n:3600000
TP53   3600000 perm   8588 sec   (419 perm/sec)   p_kst 2.777778e-07   p_cons 2.777778e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.021850e-06	k: 0	n:3610000
Cons ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
KS ci ratio: 2.771857e+00	ci left: 7.013243e-09	ci right 1.543391e-06	k: 1	n:3610000
TP53   3610000 perm   8628 sec   (418 perm/sec)   p_kst 2.770083e-07   p_cons 2.770083e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.019027e-06	k: 0	n:3620000
Cons ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
KS ci ratio: 2.771857e+00	ci left: 6.993870e-09	ci right 1.539127e-06	k: 1	n:3620000
TP53   3620000 perm   8670 sec   (418 perm/sec)   p_kst 2.762431e-07   p_cons 2.762431e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.016220e-06	k: 0	n:3630000
Cons ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
KS ci ratio: 2.771857e+00	ci left: 6.974603e-09	ci right 1.534887e-06	k: 1	n:3630000
TP53   3630000 perm   8714 sec   (417 perm/sec)   p_kst 2.754821e-07   p_cons 2.754821e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.013428e-06	k: 0	n:3640000
Cons ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
KS ci ratio: 2.771857e+00	ci left: 6.955442e-09	ci right 1.530670e-06	k: 1	n:3640000
TP53   3640000 perm   8756 sec   (416 perm/sec)   p_kst 2.747253e-07   p_cons 2.747253e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.010651e-06	k: 0	n:3650000
Cons ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
KS ci ratio: 2.771857e+00	ci left: 6.936386e-09	ci right 1.526477e-06	k: 1	n:3650000
TP53   3650000 perm   8799 sec   (415 perm/sec)   p_kst 2.739726e-07   p_cons 2.739726e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.007890e-06	k: 0	n:3660000
Cons ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
KS ci ratio: 2.771857e+00	ci left: 6.917434e-09	ci right 1.522306e-06	k: 1	n:3660000
TP53   3660000 perm   8839 sec   (414 perm/sec)   p_kst 2.732240e-07   p_cons 2.732240e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.005144e-06	k: 0	n:3670000
Cons ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
KS ci ratio: 2.771857e+00	ci left: 6.898585e-09	ci right 1.518158e-06	k: 1	n:3670000
TP53   3670000 perm   8879 sec   (413 perm/sec)   p_kst 2.724796e-07   p_cons 2.724796e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 1.002412e-06	k: 0	n:3680000
Cons ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
KS ci ratio: 2.771857e+00	ci left: 6.879839e-09	ci right 1.514033e-06	k: 1	n:3680000
TP53   3680000 perm   8922 sec   (412 perm/sec)   p_kst 2.717391e-07   p_cons 2.717391e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.996958e-07	k: 0	n:3690000
Cons ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
KS ci ratio: 2.771857e+00	ci left: 6.861195e-09	ci right 1.509930e-06	k: 1	n:3690000
TP53   3690000 perm   8964 sec   (412 perm/sec)   p_kst 2.710027e-07   p_cons 2.710027e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.969940e-07	k: 0	n:3700000
Cons ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
KS ci ratio: 2.771857e+00	ci left: 6.842651e-09	ci right 1.505849e-06	k: 1	n:3700000
TP53   3700000 perm   9005 sec   (411 perm/sec)   p_kst 2.702703e-07   p_cons 2.702703e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.943066e-07	k: 0	n:3710000
Cons ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
KS ci ratio: 2.771857e+00	ci left: 6.824207e-09	ci right 1.501790e-06	k: 1	n:3710000
TP53   3710000 perm   9045 sec   (410 perm/sec)   p_kst 2.695418e-07   p_cons 2.695418e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.916338e-07	k: 0	n:3720000
Cons ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
KS ci ratio: 2.771857e+00	ci left: 6.805862e-09	ci right 1.497753e-06	k: 1	n:3720000
TP53   3720000 perm   9085 sec   (409 perm/sec)   p_kst 2.688172e-07   p_cons 2.688172e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.889752e-07	k: 0	n:3730000
Cons ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
KS ci ratio: 2.771857e+00	ci left: 6.787616e-09	ci right 1.493737e-06	k: 1	n:3730000
TP53   3730000 perm   9127 sec   (409 perm/sec)   p_kst 2.680965e-07   p_cons 2.680965e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.863309e-07	k: 0	n:3740000
Cons ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
KS ci ratio: 2.771857e+00	ci left: 6.769467e-09	ci right 1.489743e-06	k: 1	n:3740000
TP53   3740000 perm   9169 sec   (408 perm/sec)   p_kst 2.673797e-07   p_cons 2.673797e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.837007e-07	k: 0	n:3750000
Cons ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
KS ci ratio: 2.771857e+00	ci left: 6.751415e-09	ci right 1.485771e-06	k: 1	n:3750000
TP53   3750000 perm   9215 sec   (407 perm/sec)   p_kst 2.666667e-07   p_cons 2.666667e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.810845e-07	k: 0	n:3760000
Cons ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
KS ci ratio: 2.771857e+00	ci left: 6.733460e-09	ci right 1.481819e-06	k: 1	n:3760000
TP53   3760000 perm   9258 sec   (406 perm/sec)   p_kst 2.659574e-07   p_cons 2.659574e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.784821e-07	k: 0	n:3770000
Cons ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
KS ci ratio: 2.771857e+00	ci left: 6.715599e-09	ci right 1.477889e-06	k: 1	n:3770000
TP53   3770000 perm   9299 sec   (405 perm/sec)   p_kst 2.652520e-07   p_cons 2.652520e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.758936e-07	k: 0	n:3780000
Cons ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
KS ci ratio: 2.771857e+00	ci left: 6.697833e-09	ci right 1.473979e-06	k: 1	n:3780000
TP53   3780000 perm   9344 sec   (405 perm/sec)   p_kst 2.645503e-07   p_cons 2.645503e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.733186e-07	k: 0	n:3790000
Cons ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
KS ci ratio: 2.771857e+00	ci left: 6.680160e-09	ci right 1.470090e-06	k: 1	n:3790000
TP53   3790000 perm   9386 sec   (404 perm/sec)   p_kst 2.638522e-07   p_cons 2.638522e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.707573e-07	k: 0	n:3800000
Cons ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
KS ci ratio: 2.771857e+00	ci left: 6.662581e-09	ci right 1.466221e-06	k: 1	n:3800000
TP53   3800000 perm   9427 sec   (403 perm/sec)   p_kst 2.631579e-07   p_cons 2.631579e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.682094e-07	k: 0	n:3810000
Cons ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
KS ci ratio: 2.771857e+00	ci left: 6.645094e-09	ci right 1.462373e-06	k: 1	n:3810000
TP53   3810000 perm   9469 sec   (402 perm/sec)   p_kst 2.624672e-07   p_cons 2.624672e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.656748e-07	k: 0	n:3820000
Cons ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
KS ci ratio: 2.771857e+00	ci left: 6.627698e-09	ci right 1.458545e-06	k: 1	n:3820000
TP53   3820000 perm   9512 sec   (402 perm/sec)   p_kst 2.617801e-07   p_cons 2.617801e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.631534e-07	k: 0	n:3830000
Cons ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
KS ci ratio: 2.771857e+00	ci left: 6.610394e-09	ci right 1.454736e-06	k: 1	n:3830000
TP53   3830000 perm   9553 sec   (401 perm/sec)   p_kst 2.610966e-07   p_cons 2.610966e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.606452e-07	k: 0	n:3840000
Cons ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
KS ci ratio: 2.771857e+00	ci left: 6.593179e-09	ci right 1.450948e-06	k: 1	n:3840000
TP53   3840000 perm   9595 sec   (400 perm/sec)   p_kst 2.604167e-07   p_cons 2.604167e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.581500e-07	k: 0	n:3850000
Cons ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
KS ci ratio: 2.771858e+00	ci left: 6.576054e-09	ci right 1.447179e-06	k: 1	n:3850000
TP53   3850000 perm   9637 sec   (400 perm/sec)   p_kst 2.597403e-07   p_cons 2.597403e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.556678e-07	k: 0	n:3860000
Cons ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
KS ci ratio: 2.771858e+00	ci left: 6.559018e-09	ci right 1.443430e-06	k: 1	n:3860000
TP53   3860000 perm   9680 sec   (399 perm/sec)   p_kst 2.590674e-07   p_cons 2.590674e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.531984e-07	k: 0	n:3870000
Cons ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
KS ci ratio: 2.771858e+00	ci left: 6.542069e-09	ci right 1.439700e-06	k: 1	n:3870000
TP53   3870000 perm   9725 sec   (398 perm/sec)   p_kst 2.583979e-07   p_cons 2.583979e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.507417e-07	k: 0	n:3880000
Cons ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
KS ci ratio: 2.771858e+00	ci left: 6.525208e-09	ci right 1.435990e-06	k: 1	n:3880000
TP53   3880000 perm   9767 sec   (397 perm/sec)   p_kst 2.577320e-07   p_cons 2.577320e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.482976e-07	k: 0	n:3890000
Cons ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
KS ci ratio: 2.771858e+00	ci left: 6.508434e-09	ci right 1.432298e-06	k: 1	n:3890000
TP53   3890000 perm   9810 sec   (397 perm/sec)   p_kst 2.570694e-07   p_cons 2.570694e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.458661e-07	k: 0	n:3900000
Cons ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
KS ci ratio: 2.771858e+00	ci left: 6.491746e-09	ci right 1.428626e-06	k: 1	n:3900000
TP53   3900000 perm   9853 sec   (396 perm/sec)   p_kst 2.564103e-07   p_cons 2.564103e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.434470e-07	k: 0	n:3910000
Cons ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
KS ci ratio: 2.771858e+00	ci left: 6.475143e-09	ci right 1.424972e-06	k: 1	n:3910000
TP53   3910000 perm   9895 sec   (395 perm/sec)   p_kst 2.557545e-07   p_cons 2.557545e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.410402e-07	k: 0	n:3920000
Cons ci ratio: 2.771858e+00	ci left: 6.458624e-09	ci right 1.421337e-06	k: 1	n:3920000
KS ci ratio: 2.771858e+00	ci left: 6.458624e-09	ci right 1.421337e-06	k: 1	n:3920000
TP53   3920000 perm   9938 sec   (394 perm/sec)   p_kst 2.551020e-07   p_cons 2.551020e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.386457e-07	k: 0	n:3930000
Cons ci ratio: 2.771858e+00	ci left: 6.442190e-09	ci right 1.417720e-06	k: 1	n:3930000
KS ci ratio: 2.771858e+00	ci left: 6.442190e-09	ci right 1.417720e-06	k: 1	n:3930000
TP53   3930000 perm   9980 sec   (394 perm/sec)   p_kst 2.544529e-07   p_cons 2.544529e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.362634e-07	k: 0	n:3940000
Cons ci ratio: 2.771858e+00	ci left: 6.425839e-09	ci right 1.414122e-06	k: 1	n:3940000
KS ci ratio: 2.771858e+00	ci left: 6.425839e-09	ci right 1.414122e-06	k: 1	n:3940000
TP53   3940000 perm   10022 sec   (393 perm/sec)   p_kst 2.538071e-07   p_cons 2.538071e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.338931e-07	k: 0	n:3950000
Cons ci ratio: 2.771858e+00	ci left: 6.409572e-09	ci right 1.410542e-06	k: 1	n:3950000
KS ci ratio: 2.771858e+00	ci left: 6.409572e-09	ci right 1.410542e-06	k: 1	n:3950000
TP53   3950000 perm   10068 sec   (392 perm/sec)   p_kst 2.531646e-07   p_cons 2.531646e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.315348e-07	k: 0	n:3960000
Cons ci ratio: 2.771858e+00	ci left: 6.393386e-09	ci right 1.406980e-06	k: 1	n:3960000
KS ci ratio: 2.771858e+00	ci left: 6.393386e-09	ci right 1.406980e-06	k: 1	n:3960000
TP53   3960000 perm   10111 sec   (392 perm/sec)   p_kst 2.525253e-07   p_cons 2.525253e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.291883e-07	k: 0	n:3970000
Cons ci ratio: 2.771858e+00	ci left: 6.377281e-09	ci right 1.403436e-06	k: 1	n:3970000
KS ci ratio: 2.771858e+00	ci left: 6.377281e-09	ci right 1.403436e-06	k: 1	n:3970000
TP53   3970000 perm   10153 sec   (391 perm/sec)   p_kst 2.518892e-07   p_cons 2.518892e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.268537e-07	k: 0	n:3980000
Cons ci ratio: 2.771858e+00	ci left: 6.361258e-09	ci right 1.399910e-06	k: 1	n:3980000
KS ci ratio: 2.771858e+00	ci left: 6.361258e-09	ci right 1.399910e-06	k: 1	n:3980000
TP53   3980000 perm   10198 sec   (390 perm/sec)   p_kst 2.512563e-07   p_cons 2.512563e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.245308e-07	k: 0	n:3990000
Cons ci ratio: 2.771858e+00	ci left: 6.345315e-09	ci right 1.396401e-06	k: 1	n:3990000
KS ci ratio: 2.771858e+00	ci left: 6.345315e-09	ci right 1.396401e-06	k: 1	n:3990000
TP53   3990000 perm   10245 sec   (389 perm/sec)   p_kst 2.506266e-07   p_cons 2.506266e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.222194e-07	k: 0	n:4000000
Cons ci ratio: 2.771858e+00	ci left: 6.329452e-09	ci right 1.392910e-06	k: 1	n:4000000
KS ci ratio: 2.771858e+00	ci left: 6.329452e-09	ci right 1.392910e-06	k: 1	n:4000000
TP53   4000000 perm   10288 sec   (389 perm/sec)   p_kst 2.500000e-07   p_cons 2.500000e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.199196e-07	k: 0	n:4010000
Cons ci ratio: 2.771858e+00	ci left: 6.313668e-09	ci right 1.389436e-06	k: 1	n:4010000
KS ci ratio: 2.771858e+00	ci left: 6.313668e-09	ci right 1.389436e-06	k: 1	n:4010000
TP53   4010000 perm   10332 sec   (388 perm/sec)   p_kst 2.493766e-07   p_cons 2.493766e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.176313e-07	k: 0	n:4020000
Cons ci ratio: 2.771858e+00	ci left: 6.297962e-09	ci right 1.385980e-06	k: 1	n:4020000
KS ci ratio: 2.771858e+00	ci left: 6.297962e-09	ci right 1.385980e-06	k: 1	n:4020000
TP53   4020000 perm   10375 sec   (387 perm/sec)   p_kst 2.487562e-07   p_cons 2.487562e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.153543e-07	k: 0	n:4030000
Cons ci ratio: 2.771858e+00	ci left: 6.282334e-09	ci right 1.382541e-06	k: 1	n:4030000
KS ci ratio: 2.771858e+00	ci left: 6.282334e-09	ci right 1.382541e-06	k: 1	n:4030000
TP53   4030000 perm   10417 sec   (387 perm/sec)   p_kst 2.481390e-07   p_cons 2.481390e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.130886e-07	k: 0	n:4040000
Cons ci ratio: 2.771858e+00	ci left: 6.266784e-09	ci right 1.379119e-06	k: 1	n:4040000
KS ci ratio: 2.771858e+00	ci left: 6.266784e-09	ci right 1.379119e-06	k: 1	n:4040000
TP53   4040000 perm   10464 sec   (386 perm/sec)   p_kst 2.475248e-07   p_cons 2.475248e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.108340e-07	k: 0	n:4050000
Cons ci ratio: 2.771858e+00	ci left: 6.251311e-09	ci right 1.375714e-06	k: 1	n:4050000
KS ci ratio: 2.771858e+00	ci left: 6.251311e-09	ci right 1.375714e-06	k: 1	n:4050000
TP53   4050000 perm   10508 sec   (385 perm/sec)   p_kst 2.469136e-07   p_cons 2.469136e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.085906e-07	k: 0	n:4060000
Cons ci ratio: 2.771858e+00	ci left: 6.235913e-09	ci right 1.372325e-06	k: 1	n:4060000
KS ci ratio: 2.771858e+00	ci left: 6.235913e-09	ci right 1.372325e-06	k: 1	n:4060000
TP53   4060000 perm   10551 sec   (385 perm/sec)   p_kst 2.463054e-07   p_cons 2.463054e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.063582e-07	k: 0	n:4070000
Cons ci ratio: 2.771858e+00	ci left: 6.220592e-09	ci right 1.368953e-06	k: 1	n:4070000
KS ci ratio: 2.771858e+00	ci left: 6.220592e-09	ci right 1.368953e-06	k: 1	n:4070000
TP53   4070000 perm   10596 sec   (384 perm/sec)   p_kst 2.457002e-07   p_cons 2.457002e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.041367e-07	k: 0	n:4080000
Cons ci ratio: 2.771858e+00	ci left: 6.205345e-09	ci right 1.365598e-06	k: 1	n:4080000
KS ci ratio: 2.771858e+00	ci left: 6.205345e-09	ci right 1.365598e-06	k: 1	n:4080000
TP53   4080000 perm   10639 sec   (384 perm/sec)   p_kst 2.450980e-07   p_cons 2.450980e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 9.019261e-07	k: 0	n:4090000
Cons ci ratio: 2.771858e+00	ci left: 6.190173e-09	ci right 1.362259e-06	k: 1	n:4090000
KS ci ratio: 2.771858e+00	ci left: 6.190173e-09	ci right 1.362259e-06	k: 1	n:4090000
TP53   4090000 perm   10681 sec   (383 perm/sec)   p_kst 2.444988e-07   p_cons 2.444988e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.997263e-07	k: 0	n:4100000
Cons ci ratio: 2.771858e+00	ci left: 6.175075e-09	ci right 1.358937e-06	k: 1	n:4100000
KS ci ratio: 2.771858e+00	ci left: 6.175075e-09	ci right 1.358937e-06	k: 1	n:4100000
TP53   4100000 perm   10728 sec   (382 perm/sec)   p_kst 2.439024e-07   p_cons 2.439024e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.975372e-07	k: 0	n:4110000
Cons ci ratio: 2.771858e+00	ci left: 6.160051e-09	ci right 1.355630e-06	k: 1	n:4110000
KS ci ratio: 2.771858e+00	ci left: 6.160051e-09	ci right 1.355630e-06	k: 1	n:4110000
TP53   4110000 perm   10772 sec   (382 perm/sec)   p_kst 2.433090e-07   p_cons 2.433090e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.953587e-07	k: 0	n:4120000
Cons ci ratio: 2.771858e+00	ci left: 6.145099e-09	ci right 1.352340e-06	k: 1	n:4120000
KS ci ratio: 2.771858e+00	ci left: 6.145099e-09	ci right 1.352340e-06	k: 1	n:4120000
TP53   4120000 perm   10815 sec   (381 perm/sec)   p_kst 2.427184e-07   p_cons 2.427184e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.931908e-07	k: 0	n:4130000
Cons ci ratio: 2.771858e+00	ci left: 6.130220e-09	ci right 1.349065e-06	k: 1	n:4130000
KS ci ratio: 2.771858e+00	ci left: 6.130220e-09	ci right 1.349065e-06	k: 1	n:4130000
TP53   4130000 perm   10858 sec   (380 perm/sec)   p_kst 2.421308e-07   p_cons 2.421308e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.910333e-07	k: 0	n:4140000
Cons ci ratio: 2.771858e+00	ci left: 6.115413e-09	ci right 1.345807e-06	k: 1	n:4140000
KS ci ratio: 2.771858e+00	ci left: 6.115413e-09	ci right 1.345807e-06	k: 1	n:4140000
TP53   4140000 perm   10902 sec   (380 perm/sec)   p_kst 2.415459e-07   p_cons 2.415459e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.888862e-07	k: 0	n:4150000
Cons ci ratio: 2.771858e+00	ci left: 6.100677e-09	ci right 1.342564e-06	k: 1	n:4150000
KS ci ratio: 2.771858e+00	ci left: 6.100677e-09	ci right 1.342564e-06	k: 1	n:4150000
TP53   4150000 perm   10946 sec   (379 perm/sec)   p_kst 2.409639e-07   p_cons 2.409639e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.867495e-07	k: 0	n:4160000
Cons ci ratio: 2.771858e+00	ci left: 6.086011e-09	ci right 1.339337e-06	k: 1	n:4160000
KS ci ratio: 2.771858e+00	ci left: 6.086011e-09	ci right 1.339337e-06	k: 1	n:4160000
TP53   4160000 perm   10989 sec   (379 perm/sec)   p_kst 2.403846e-07   p_cons 2.403846e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.846230e-07	k: 0	n:4170000
Cons ci ratio: 2.771858e+00	ci left: 6.071417e-09	ci right 1.336125e-06	k: 1	n:4170000
KS ci ratio: 2.771858e+00	ci left: 6.071417e-09	ci right 1.336125e-06	k: 1	n:4170000
TP53   4170000 perm   11033 sec   (378 perm/sec)   p_kst 2.398082e-07   p_cons 2.398082e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.825067e-07	k: 0	n:4180000
Cons ci ratio: 2.771858e+00	ci left: 6.056892e-09	ci right 1.332928e-06	k: 1	n:4180000
KS ci ratio: 2.771858e+00	ci left: 6.056892e-09	ci right 1.332928e-06	k: 1	n:4180000
TP53   4180000 perm   11076 sec   (377 perm/sec)   p_kst 2.392344e-07   p_cons 2.392344e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.804004e-07	k: 0	n:4190000
Cons ci ratio: 2.771858e+00	ci left: 6.042436e-09	ci right 1.329747e-06	k: 1	n:4190000
KS ci ratio: 2.771858e+00	ci left: 6.042436e-09	ci right 1.329747e-06	k: 1	n:4190000
TP53   4190000 perm   11120 sec   (377 perm/sec)   p_kst 2.386635e-07   p_cons 2.386635e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.783042e-07	k: 0	n:4200000
Cons ci ratio: 2.771858e+00	ci left: 6.028049e-09	ci right 1.326581e-06	k: 1	n:4200000
KS ci ratio: 2.771858e+00	ci left: 6.028049e-09	ci right 1.326581e-06	k: 1	n:4200000
TP53   4200000 perm   11164 sec   (376 perm/sec)   p_kst 2.380952e-07   p_cons 2.380952e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.762180e-07	k: 0	n:4210000
Cons ci ratio: 2.771858e+00	ci left: 6.013731e-09	ci right 1.323430e-06	k: 1	n:4210000
KS ci ratio: 2.771858e+00	ci left: 6.013731e-09	ci right 1.323430e-06	k: 1	n:4210000
TP53   4210000 perm   11209 sec   (376 perm/sec)   p_kst 2.375297e-07   p_cons 2.375297e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.741417e-07	k: 0	n:4220000
Cons ci ratio: 2.771858e+00	ci left: 5.999481e-09	ci right 1.320294e-06	k: 1	n:4220000
KS ci ratio: 2.771858e+00	ci left: 5.999481e-09	ci right 1.320294e-06	k: 1	n:4220000
TP53   4220000 perm   11253 sec   (375 perm/sec)   p_kst 2.369668e-07   p_cons 2.369668e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.720751e-07	k: 0	n:4230000
Cons ci ratio: 2.771858e+00	ci left: 5.985298e-09	ci right 1.317173e-06	k: 1	n:4230000
KS ci ratio: 2.771858e+00	ci left: 5.985298e-09	ci right 1.317173e-06	k: 1	n:4230000
TP53   4230000 perm   11298 sec   (374 perm/sec)   p_kst 2.364066e-07   p_cons 2.364066e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.700184e-07	k: 0	n:4240000
Cons ci ratio: 2.771858e+00	ci left: 5.971181e-09	ci right 1.314066e-06	k: 1	n:4240000
KS ci ratio: 2.771858e+00	ci left: 5.971181e-09	ci right 1.314066e-06	k: 1	n:4240000
TP53   4240000 perm   11343 sec   (374 perm/sec)   p_kst 2.358491e-07   p_cons 2.358491e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.679713e-07	k: 0	n:4250000
Cons ci ratio: 2.771858e+00	ci left: 5.957131e-09	ci right 1.310974e-06	k: 1	n:4250000
KS ci ratio: 2.771858e+00	ci left: 5.957131e-09	ci right 1.310974e-06	k: 1	n:4250000
TP53   4250000 perm   11388 sec   (373 perm/sec)   p_kst 2.352941e-07   p_cons 2.352941e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.659338e-07	k: 0	n:4260000
Cons ci ratio: 2.771858e+00	ci left: 5.943147e-09	ci right 1.307897e-06	k: 1	n:4260000
KS ci ratio: 2.771858e+00	ci left: 5.943147e-09	ci right 1.307897e-06	k: 1	n:4260000
TP53   4260000 perm   11433 sec   (373 perm/sec)   p_kst 2.347418e-07   p_cons 2.347418e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.639058e-07	k: 0	n:4270000
Cons ci ratio: 2.771858e+00	ci left: 5.929229e-09	ci right 1.304834e-06	k: 1	n:4270000
KS ci ratio: 2.771858e+00	ci left: 5.929229e-09	ci right 1.304834e-06	k: 1	n:4270000
TP53   4270000 perm   11478 sec   (372 perm/sec)   p_kst 2.341920e-07   p_cons 2.341920e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.618874e-07	k: 0	n:4280000
Cons ci ratio: 2.771858e+00	ci left: 5.915376e-09	ci right 1.301785e-06	k: 1	n:4280000
KS ci ratio: 2.771858e+00	ci left: 5.915376e-09	ci right 1.301785e-06	k: 1	n:4280000
TP53   4280000 perm   11524 sec   (371 perm/sec)   p_kst 2.336449e-07   p_cons 2.336449e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.598783e-07	k: 0	n:4290000
Cons ci ratio: 2.771858e+00	ci left: 5.901587e-09	ci right 1.298751e-06	k: 1	n:4290000
KS ci ratio: 2.771858e+00	ci left: 5.901587e-09	ci right 1.298751e-06	k: 1	n:4290000
TP53   4290000 perm   11568 sec   (371 perm/sec)   p_kst 2.331002e-07   p_cons 2.331002e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.578786e-07	k: 0	n:4300000
Cons ci ratio: 2.771858e+00	ci left: 5.887862e-09	ci right 1.295730e-06	k: 1	n:4300000
KS ci ratio: 2.771858e+00	ci left: 5.887862e-09	ci right 1.295730e-06	k: 1	n:4300000
TP53   4300000 perm   11615 sec   (370 perm/sec)   p_kst 2.325581e-07   p_cons 2.325581e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.558881e-07	k: 0	n:4310000
Cons ci ratio: 2.771858e+00	ci left: 5.874201e-09	ci right 1.292724e-06	k: 1	n:4310000
KS ci ratio: 2.771858e+00	ci left: 5.874201e-09	ci right 1.292724e-06	k: 1	n:4310000
TP53   4310000 perm   11660 sec   (370 perm/sec)   p_kst 2.320186e-07   p_cons 2.320186e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.539069e-07	k: 0	n:4320000
Cons ci ratio: 2.771858e+00	ci left: 5.860604e-09	ci right 1.289732e-06	k: 1	n:4320000
KS ci ratio: 2.771858e+00	ci left: 5.860604e-09	ci right 1.289732e-06	k: 1	n:4320000
TP53   4320000 perm   11709 sec   (369 perm/sec)   p_kst 2.314815e-07   p_cons 2.314815e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.519348e-07	k: 0	n:4330000
Cons ci ratio: 2.771858e+00	ci left: 5.847069e-09	ci right 1.286753e-06	k: 1	n:4330000
KS ci ratio: 2.771858e+00	ci left: 5.847069e-09	ci right 1.286753e-06	k: 1	n:4330000
TP53   4330000 perm   11755 sec   (368 perm/sec)   p_kst 2.309469e-07   p_cons 2.309469e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.499719e-07	k: 0	n:4340000
Cons ci ratio: 2.771858e+00	ci left: 5.833596e-09	ci right 1.283788e-06	k: 1	n:4340000
KS ci ratio: 2.771858e+00	ci left: 5.833596e-09	ci right 1.283788e-06	k: 1	n:4340000
TP53   4340000 perm   11800 sec   (368 perm/sec)   p_kst 2.304147e-07   p_cons 2.304147e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.480179e-07	k: 0	n:4350000
Cons ci ratio: 2.771858e+00	ci left: 5.820186e-09	ci right 1.280837e-06	k: 1	n:4350000
KS ci ratio: 2.771858e+00	ci left: 5.820186e-09	ci right 1.280837e-06	k: 1	n:4350000
TP53   4350000 perm   11847 sec   (367 perm/sec)   p_kst 2.298851e-07   p_cons 2.298851e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.460729e-07	k: 0	n:4360000
Cons ci ratio: 2.771858e+00	ci left: 5.806837e-09	ci right 1.277899e-06	k: 1	n:4360000
KS ci ratio: 2.771858e+00	ci left: 5.806837e-09	ci right 1.277899e-06	k: 1	n:4360000
TP53   4360000 perm   11893 sec   (367 perm/sec)   p_kst 2.293578e-07   p_cons 2.293578e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.441368e-07	k: 0	n:4370000
Cons ci ratio: 2.771858e+00	ci left: 5.793549e-09	ci right 1.274975e-06	k: 1	n:4370000
KS ci ratio: 2.771858e+00	ci left: 5.793549e-09	ci right 1.274975e-06	k: 1	n:4370000
TP53   4370000 perm   11939 sec   (366 perm/sec)   p_kst 2.288330e-07   p_cons 2.288330e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.422096e-07	k: 0	n:4380000
Cons ci ratio: 2.771858e+00	ci left: 5.780321e-09	ci right 1.272064e-06	k: 1	n:4380000
KS ci ratio: 2.771858e+00	ci left: 5.780321e-09	ci right 1.272064e-06	k: 1	n:4380000
TP53   4380000 perm   11986 sec   (365 perm/sec)   p_kst 2.283105e-07   p_cons 2.283105e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.402911e-07	k: 0	n:4390000
Cons ci ratio: 2.771858e+00	ci left: 5.767154e-09	ci right 1.269166e-06	k: 1	n:4390000
KS ci ratio: 2.771858e+00	ci left: 5.767154e-09	ci right 1.269166e-06	k: 1	n:4390000
TP53   4390000 perm   12033 sec   (365 perm/sec)   p_kst 2.277904e-07   p_cons 2.277904e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.383813e-07	k: 0	n:4400000
Cons ci ratio: 2.771858e+00	ci left: 5.754047e-09	ci right 1.266282e-06	k: 1	n:4400000
KS ci ratio: 2.771858e+00	ci left: 5.754047e-09	ci right 1.266282e-06	k: 1	n:4400000
TP53   4400000 perm   12080 sec   (364 perm/sec)   p_kst 2.272727e-07   p_cons 2.272727e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.364803e-07	k: 0	n:4410000
Cons ci ratio: 2.771858e+00	ci left: 5.741000e-09	ci right 1.263411e-06	k: 1	n:4410000
KS ci ratio: 2.771858e+00	ci left: 5.741000e-09	ci right 1.263411e-06	k: 1	n:4410000
TP53   4410000 perm   12126 sec   (364 perm/sec)   p_kst 2.267574e-07   p_cons 2.267574e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.345878e-07	k: 0	n:4420000
Cons ci ratio: 2.771858e+00	ci left: 5.728011e-09	ci right 1.260552e-06	k: 1	n:4420000
KS ci ratio: 2.771858e+00	ci left: 5.728011e-09	ci right 1.260552e-06	k: 1	n:4420000
TP53   4420000 perm   12175 sec   (363 perm/sec)   p_kst 2.262443e-07   p_cons 2.262443e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.327038e-07	k: 0	n:4430000
Cons ci ratio: 2.771858e+00	ci left: 5.715081e-09	ci right 1.257707e-06	k: 1	n:4430000
KS ci ratio: 2.771858e+00	ci left: 5.715081e-09	ci right 1.257707e-06	k: 1	n:4430000
TP53   4430000 perm   12221 sec   (362 perm/sec)   p_kst 2.257336e-07   p_cons 2.257336e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.308284e-07	k: 0	n:4440000
Cons ci ratio: 2.771858e+00	ci left: 5.702209e-09	ci right 1.254874e-06	k: 1	n:4440000
KS ci ratio: 2.771858e+00	ci left: 5.702209e-09	ci right 1.254874e-06	k: 1	n:4440000
TP53   4440000 perm   12268 sec   (362 perm/sec)   p_kst 2.252252e-07   p_cons 2.252252e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.289613e-07	k: 0	n:4450000
Cons ci ratio: 2.771858e+00	ci left: 5.689395e-09	ci right 1.252054e-06	k: 1	n:4450000
KS ci ratio: 2.771858e+00	ci left: 5.689395e-09	ci right 1.252054e-06	k: 1	n:4450000
TP53   4450000 perm   12315 sec   (361 perm/sec)   p_kst 2.247191e-07   p_cons 2.247191e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.271027e-07	k: 0	n:4460000
Cons ci ratio: 2.771858e+00	ci left: 5.676638e-09	ci right 1.249247e-06	k: 1	n:4460000
KS ci ratio: 2.771858e+00	ci left: 5.676638e-09	ci right 1.249247e-06	k: 1	n:4460000
TP53   4460000 perm   12368 sec   (361 perm/sec)   p_kst 2.242152e-07   p_cons 2.242152e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.252523e-07	k: 0	n:4470000
Cons ci ratio: 2.771858e+00	ci left: 5.663939e-09	ci right 1.246452e-06	k: 1	n:4470000
KS ci ratio: 2.771858e+00	ci left: 5.663939e-09	ci right 1.246452e-06	k: 1	n:4470000
TP53   4470000 perm   12415 sec   (360 perm/sec)   p_kst 2.237136e-07   p_cons 2.237136e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.234103e-07	k: 0	n:4480000
Cons ci ratio: 2.771858e+00	ci left: 5.651297e-09	ci right 1.243670e-06	k: 1	n:4480000
KS ci ratio: 2.771858e+00	ci left: 5.651297e-09	ci right 1.243670e-06	k: 1	n:4480000
TP53   4480000 perm   12461 sec   (360 perm/sec)   p_kst 2.232143e-07   p_cons 2.232143e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.215764e-07	k: 0	n:4490000
Cons ci ratio: 2.771858e+00	ci left: 5.638710e-09	ci right 1.240900e-06	k: 1	n:4490000
KS ci ratio: 2.771858e+00	ci left: 5.638710e-09	ci right 1.240900e-06	k: 1	n:4490000
TP53   4490000 perm   12509 sec   (359 perm/sec)   p_kst 2.227171e-07   p_cons 2.227171e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.197507e-07	k: 0	n:4500000
Cons ci ratio: 2.771858e+00	ci left: 5.626179e-09	ci right 1.238142e-06	k: 1	n:4500000
KS ci ratio: 2.771858e+00	ci left: 5.626179e-09	ci right 1.238142e-06	k: 1	n:4500000
TP53   4500000 perm   12557 sec   (358 perm/sec)   p_kst 2.222222e-07   p_cons 2.222222e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.179330e-07	k: 0	n:4510000
Cons ci ratio: 2.771858e+00	ci left: 5.613705e-09	ci right 1.235397e-06	k: 1	n:4510000
KS ci ratio: 2.771858e+00	ci left: 5.613705e-09	ci right 1.235397e-06	k: 1	n:4510000
TP53   4510000 perm   12604 sec   (358 perm/sec)   p_kst 2.217295e-07   p_cons 2.217295e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.161234e-07	k: 0	n:4520000
Cons ci ratio: 2.771858e+00	ci left: 5.601285e-09	ci right 1.232664e-06	k: 1	n:4520000
KS ci ratio: 2.771858e+00	ci left: 5.601285e-09	ci right 1.232664e-06	k: 1	n:4520000
TP53   4520000 perm   12651 sec   (357 perm/sec)   p_kst 2.212389e-07   p_cons 2.212389e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.143218e-07	k: 0	n:4530000
Cons ci ratio: 2.771858e+00	ci left: 5.588920e-09	ci right 1.229943e-06	k: 1	n:4530000
KS ci ratio: 2.771858e+00	ci left: 5.588920e-09	ci right 1.229943e-06	k: 1	n:4530000
TP53   4530000 perm   12699 sec   (357 perm/sec)   p_kst 2.207506e-07   p_cons 2.207506e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.125282e-07	k: 0	n:4540000
Cons ci ratio: 2.771858e+00	ci left: 5.576610e-09	ci right 1.227234e-06	k: 1	n:4540000
KS ci ratio: 2.771858e+00	ci left: 5.576610e-09	ci right 1.227234e-06	k: 1	n:4540000
TP53   4540000 perm   12747 sec   (356 perm/sec)   p_kst 2.202643e-07   p_cons 2.202643e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.107424e-07	k: 0	n:4550000
Cons ci ratio: 2.771858e+00	ci left: 5.564354e-09	ci right 1.224536e-06	k: 1	n:4550000
KS ci ratio: 2.771858e+00	ci left: 5.564354e-09	ci right 1.224536e-06	k: 1	n:4550000
TP53   4550000 perm   12795 sec   (356 perm/sec)   p_kst 2.197802e-07   p_cons 2.197802e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.089645e-07	k: 0	n:4560000
Cons ci ratio: 2.771858e+00	ci left: 5.552151e-09	ci right 1.221851e-06	k: 1	n:4560000
KS ci ratio: 2.771858e+00	ci left: 5.552151e-09	ci right 1.221851e-06	k: 1	n:4560000
TP53   4560000 perm   12843 sec   (355 perm/sec)   p_kst 2.192982e-07   p_cons 2.192982e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.071943e-07	k: 0	n:4570000
Cons ci ratio: 2.771858e+00	ci left: 5.540002e-09	ci right 1.219177e-06	k: 1	n:4570000
KS ci ratio: 2.771858e+00	ci left: 5.540002e-09	ci right 1.219177e-06	k: 1	n:4570000
TP53   4570000 perm   12890 sec   (355 perm/sec)   p_kst 2.188184e-07   p_cons 2.188184e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.054319e-07	k: 0	n:4580000
Cons ci ratio: 2.771858e+00	ci left: 5.527906e-09	ci right 1.216515e-06	k: 1	n:4580000
KS ci ratio: 2.771858e+00	ci left: 5.527906e-09	ci right 1.216515e-06	k: 1	n:4580000
TP53   4580000 perm   12939 sec   (354 perm/sec)   p_kst 2.183406e-07   p_cons 2.183406e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.036771e-07	k: 0	n:4590000
Cons ci ratio: 2.771858e+00	ci left: 5.515862e-09	ci right 1.213865e-06	k: 1	n:4590000
KS ci ratio: 2.771858e+00	ci left: 5.515862e-09	ci right 1.213865e-06	k: 1	n:4590000
TP53   4590000 perm   12986 sec   (353 perm/sec)   p_kst 2.178649e-07   p_cons 2.178649e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.019300e-07	k: 0	n:4600000
Cons ci ratio: 2.771858e+00	ci left: 5.503871e-09	ci right 1.211226e-06	k: 1	n:4600000
KS ci ratio: 2.771858e+00	ci left: 5.503871e-09	ci right 1.211226e-06	k: 1	n:4600000
TP53   4600000 perm   13033 sec   (353 perm/sec)   p_kst 2.173913e-07   p_cons 2.173913e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 8.001904e-07	k: 0	n:4610000
Cons ci ratio: 2.771858e+00	ci left: 5.491932e-09	ci right 1.208599e-06	k: 1	n:4610000
KS ci ratio: 2.771858e+00	ci left: 5.491932e-09	ci right 1.208599e-06	k: 1	n:4610000
TP53   4610000 perm   13081 sec   (352 perm/sec)   p_kst 2.169197e-07   p_cons 2.169197e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.984584e-07	k: 0	n:4620000
Cons ci ratio: 2.771858e+00	ci left: 5.480045e-09	ci right 1.205983e-06	k: 1	n:4620000
KS ci ratio: 2.771858e+00	ci left: 5.480045e-09	ci right 1.205983e-06	k: 1	n:4620000
TP53   4620000 perm   13130 sec   (352 perm/sec)   p_kst 2.164502e-07   p_cons 2.164502e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.967339e-07	k: 0	n:4630000
Cons ci ratio: 2.771858e+00	ci left: 5.468209e-09	ci right 1.203378e-06	k: 1	n:4630000
KS ci ratio: 2.771858e+00	ci left: 5.468209e-09	ci right 1.203378e-06	k: 1	n:4630000
TP53   4630000 perm   13178 sec   (351 perm/sec)   p_kst 2.159827e-07   p_cons 2.159827e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.950168e-07	k: 0	n:4640000
Cons ci ratio: 2.771858e+00	ci left: 5.456424e-09	ci right 1.200785e-06	k: 1	n:4640000
KS ci ratio: 2.771858e+00	ci left: 5.456424e-09	ci right 1.200785e-06	k: 1	n:4640000
TP53   4640000 perm   13227 sec   (351 perm/sec)   p_kst 2.155172e-07   p_cons 2.155172e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.933071e-07	k: 0	n:4650000
Cons ci ratio: 2.771858e+00	ci left: 5.444690e-09	ci right 1.198202e-06	k: 1	n:4650000
KS ci ratio: 2.771858e+00	ci left: 5.444690e-09	ci right 1.198202e-06	k: 1	n:4650000
TP53   4650000 perm   13275 sec   (350 perm/sec)   p_kst 2.150538e-07   p_cons 2.150538e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.916047e-07	k: 0	n:4660000
Cons ci ratio: 2.771858e+00	ci left: 5.433006e-09	ci right 1.195631e-06	k: 1	n:4660000
KS ci ratio: 2.771858e+00	ci left: 5.433006e-09	ci right 1.195631e-06	k: 1	n:4660000
TP53   4660000 perm   13323 sec   (350 perm/sec)   p_kst 2.145923e-07   p_cons 2.145923e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.899096e-07	k: 0	n:4670000
Cons ci ratio: 2.771858e+00	ci left: 5.421372e-09	ci right 1.193071e-06	k: 1	n:4670000
KS ci ratio: 2.771858e+00	ci left: 5.421372e-09	ci right 1.193071e-06	k: 1	n:4670000
TP53   4670000 perm   13371 sec   (349 perm/sec)   p_kst 2.141328e-07   p_cons 2.141328e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.882218e-07	k: 0	n:4680000
Cons ci ratio: 2.771858e+00	ci left: 5.409788e-09	ci right 1.190522e-06	k: 1	n:4680000
KS ci ratio: 2.771858e+00	ci left: 5.409788e-09	ci right 1.190522e-06	k: 1	n:4680000
TP53   4680000 perm   13421 sec   (349 perm/sec)   p_kst 2.136752e-07   p_cons 2.136752e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.865412e-07	k: 0	n:4690000
Cons ci ratio: 2.771858e+00	ci left: 5.398253e-09	ci right 1.187983e-06	k: 1	n:4690000
KS ci ratio: 2.771858e+00	ci left: 5.398253e-09	ci right 1.187983e-06	k: 1	n:4690000
TP53   4690000 perm   13470 sec   (348 perm/sec)   p_kst 2.132196e-07   p_cons 2.132196e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.848677e-07	k: 0	n:4700000
Cons ci ratio: 2.771858e+00	ci left: 5.386768e-09	ci right 1.185455e-06	k: 1	n:4700000
KS ci ratio: 2.771858e+00	ci left: 5.386768e-09	ci right 1.185455e-06	k: 1	n:4700000
TP53   4700000 perm   13518 sec   (348 perm/sec)   p_kst 2.127660e-07   p_cons 2.127660e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.832013e-07	k: 0	n:4710000
Cons ci ratio: 2.771858e+00	ci left: 5.375331e-09	ci right 1.182939e-06	k: 1	n:4710000
KS ci ratio: 2.771858e+00	ci left: 5.375331e-09	ci right 1.182939e-06	k: 1	n:4710000
TP53   4710000 perm   13569 sec   (347 perm/sec)   p_kst 2.123142e-07   p_cons 2.123142e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.815419e-07	k: 0	n:4720000
Cons ci ratio: 2.771858e+00	ci left: 5.363942e-09	ci right 1.180432e-06	k: 1	n:4720000
KS ci ratio: 2.771858e+00	ci left: 5.363942e-09	ci right 1.180432e-06	k: 1	n:4720000
TP53   4720000 perm   13617 sec   (347 perm/sec)   p_kst 2.118644e-07   p_cons 2.118644e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.798896e-07	k: 0	n:4730000
Cons ci ratio: 2.771858e+00	ci left: 5.352602e-09	ci right 1.177937e-06	k: 1	n:4730000
KS ci ratio: 2.771858e+00	ci left: 5.352602e-09	ci right 1.177937e-06	k: 1	n:4730000
TP53   4730000 perm   13665 sec   (346 perm/sec)   p_kst 2.114165e-07   p_cons 2.114165e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.782443e-07	k: 0	n:4740000
Cons ci ratio: 2.771858e+00	ci left: 5.341310e-09	ci right 1.175452e-06	k: 1	n:4740000
KS ci ratio: 2.771858e+00	ci left: 5.341310e-09	ci right 1.175452e-06	k: 1	n:4740000
TP53   4740000 perm   13714 sec   (346 perm/sec)   p_kst 2.109705e-07   p_cons 2.109705e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.766059e-07	k: 0	n:4750000
Cons ci ratio: 2.771858e+00	ci left: 5.330065e-09	ci right 1.172977e-06	k: 1	n:4750000
KS ci ratio: 2.771858e+00	ci left: 5.330065e-09	ci right 1.172977e-06	k: 1	n:4750000
TP53   4750000 perm   13765 sec   (345 perm/sec)   p_kst 2.105263e-07   p_cons 2.105263e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.749744e-07	k: 0	n:4760000
Cons ci ratio: 2.771858e+00	ci left: 5.318867e-09	ci right 1.170513e-06	k: 1	n:4760000
KS ci ratio: 2.771858e+00	ci left: 5.318867e-09	ci right 1.170513e-06	k: 1	n:4760000
TP53   4760000 perm   13813 sec   (345 perm/sec)   p_kst 2.100840e-07   p_cons 2.100840e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.733497e-07	k: 0	n:4770000
Cons ci ratio: 2.771858e+00	ci left: 5.307716e-09	ci right 1.168059e-06	k: 1	n:4770000
KS ci ratio: 2.771858e+00	ci left: 5.307716e-09	ci right 1.168059e-06	k: 1	n:4770000
TP53   4770000 perm   13863 sec   (344 perm/sec)   p_kst 2.096436e-07   p_cons 2.096436e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.717318e-07	k: 0	n:4780000
Cons ci ratio: 2.771858e+00	ci left: 5.296612e-09	ci right 1.165615e-06	k: 1	n:4780000
KS ci ratio: 2.771858e+00	ci left: 5.296612e-09	ci right 1.165615e-06	k: 1	n:4780000
TP53   4780000 perm   13912 sec   (344 perm/sec)   p_kst 2.092050e-07   p_cons 2.092050e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.701207e-07	k: 0	n:4790000
Cons ci ratio: 2.771858e+00	ci left: 5.285555e-09	ci right 1.163182e-06	k: 1	n:4790000
KS ci ratio: 2.771858e+00	ci left: 5.285555e-09	ci right 1.163182e-06	k: 1	n:4790000
TP53   4790000 perm   13962 sec   (343 perm/sec)   p_kst 2.087683e-07   p_cons 2.087683e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.685163e-07	k: 0	n:4800000
Cons ci ratio: 2.771858e+00	ci left: 5.274543e-09	ci right 1.160758e-06	k: 1	n:4800000
KS ci ratio: 2.771858e+00	ci left: 5.274543e-09	ci right 1.160758e-06	k: 1	n:4800000
TP53   4800000 perm   14011 sec   (343 perm/sec)   p_kst 2.083333e-07   p_cons 2.083333e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.669185e-07	k: 0	n:4810000
Cons ci ratio: 2.771858e+00	ci left: 5.263578e-09	ci right 1.158345e-06	k: 1	n:4810000
KS ci ratio: 2.771858e+00	ci left: 5.263578e-09	ci right 1.158345e-06	k: 1	n:4810000
TP53   4810000 perm   14061 sec   (342 perm/sec)   p_kst 2.079002e-07   p_cons 2.079002e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.653274e-07	k: 0	n:4820000
Cons ci ratio: 2.771858e+00	ci left: 5.252657e-09	ci right 1.155942e-06	k: 1	n:4820000
KS ci ratio: 2.771858e+00	ci left: 5.252657e-09	ci right 1.155942e-06	k: 1	n:4820000
TP53   4820000 perm   14111 sec   (342 perm/sec)   p_kst 2.074689e-07   p_cons 2.074689e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.637429e-07	k: 0	n:4830000
Cons ci ratio: 2.771858e+00	ci left: 5.241782e-09	ci right 1.153549e-06	k: 1	n:4830000
KS ci ratio: 2.771858e+00	ci left: 5.241782e-09	ci right 1.153549e-06	k: 1	n:4830000
TP53   4830000 perm   14161 sec   (341 perm/sec)   p_kst 2.070393e-07   p_cons 2.070393e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.621649e-07	k: 0	n:4840000
Cons ci ratio: 2.771858e+00	ci left: 5.230952e-09	ci right 1.151165e-06	k: 1	n:4840000
KS ci ratio: 2.771858e+00	ci left: 5.230952e-09	ci right 1.151165e-06	k: 1	n:4840000
TP53   4840000 perm   14210 sec   (341 perm/sec)   p_kst 2.066116e-07   p_cons 2.066116e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.605934e-07	k: 0	n:4850000
Cons ci ratio: 2.771858e+00	ci left: 5.220167e-09	ci right 1.148792e-06	k: 1	n:4850000
KS ci ratio: 2.771858e+00	ci left: 5.220167e-09	ci right 1.148792e-06	k: 1	n:4850000
TP53   4850000 perm   14260 sec   (340 perm/sec)   p_kst 2.061856e-07   p_cons 2.061856e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.590284e-07	k: 0	n:4860000
Cons ci ratio: 2.771858e+00	ci left: 5.209426e-09	ci right 1.146428e-06	k: 1	n:4860000
KS ci ratio: 2.771858e+00	ci left: 5.209426e-09	ci right 1.146428e-06	k: 1	n:4860000
TP53   4860000 perm   14312 sec   (340 perm/sec)   p_kst 2.057613e-07   p_cons 2.057613e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.574698e-07	k: 0	n:4870000
Cons ci ratio: 2.771858e+00	ci left: 5.198729e-09	ci right 1.144074e-06	k: 1	n:4870000
KS ci ratio: 2.771858e+00	ci left: 5.198729e-09	ci right 1.144074e-06	k: 1	n:4870000
TP53   4870000 perm   14363 sec   (339 perm/sec)   p_kst 2.053388e-07   p_cons 2.053388e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.559176e-07	k: 0	n:4880000
Cons ci ratio: 2.771858e+00	ci left: 5.188076e-09	ci right 1.141730e-06	k: 1	n:4880000
KS ci ratio: 2.771858e+00	ci left: 5.188076e-09	ci right 1.141730e-06	k: 1	n:4880000
TP53   4880000 perm   14413 sec   (339 perm/sec)   p_kst 2.049180e-07   p_cons 2.049180e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.543718e-07	k: 0	n:4890000
Cons ci ratio: 2.771858e+00	ci left: 5.177466e-09	ci right 1.139395e-06	k: 1	n:4890000
KS ci ratio: 2.771858e+00	ci left: 5.177466e-09	ci right 1.139395e-06	k: 1	n:4890000
TP53   4890000 perm   14463 sec   (338 perm/sec)   p_kst 2.044990e-07   p_cons 2.044990e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.528323e-07	k: 0	n:4900000
Cons ci ratio: 2.771858e+00	ci left: 5.166900e-09	ci right 1.137070e-06	k: 1	n:4900000
KS ci ratio: 2.771858e+00	ci left: 5.166900e-09	ci right 1.137070e-06	k: 1	n:4900000
TP53   4900000 perm   14514 sec   (338 perm/sec)   p_kst 2.040816e-07   p_cons 2.040816e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.512990e-07	k: 0	n:4910000
Cons ci ratio: 2.771858e+00	ci left: 5.156376e-09	ci right 1.134754e-06	k: 1	n:4910000
KS ci ratio: 2.771858e+00	ci left: 5.156376e-09	ci right 1.134754e-06	k: 1	n:4910000
TP53   4910000 perm   14564 sec   (337 perm/sec)   p_kst 2.036660e-07   p_cons 2.036660e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.497720e-07	k: 0	n:4920000
Cons ci ratio: 2.771858e+00	ci left: 5.145896e-09	ci right 1.132447e-06	k: 1	n:4920000
KS ci ratio: 2.771858e+00	ci left: 5.145896e-09	ci right 1.132447e-06	k: 1	n:4920000
TP53   4920000 perm   14614 sec   (337 perm/sec)   p_kst 2.032520e-07   p_cons 2.032520e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.482511e-07	k: 0	n:4930000
Cons ci ratio: 2.771858e+00	ci left: 5.135458e-09	ci right 1.130150e-06	k: 1	n:4930000
KS ci ratio: 2.771858e+00	ci left: 5.135458e-09	ci right 1.130150e-06	k: 1	n:4930000
TP53   4930000 perm   14664 sec   (336 perm/sec)   p_kst 2.028398e-07   p_cons 2.028398e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.467365e-07	k: 0	n:4940000
Cons ci ratio: 2.771858e+00	ci left: 5.125062e-09	ci right 1.127863e-06	k: 1	n:4940000
KS ci ratio: 2.771858e+00	ci left: 5.125062e-09	ci right 1.127863e-06	k: 1	n:4940000
TP53   4940000 perm   14715 sec   (336 perm/sec)   p_kst 2.024291e-07   p_cons 2.024291e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.452279e-07	k: 0	n:4950000
Cons ci ratio: 2.771858e+00	ci left: 5.114709e-09	ci right 1.125584e-06	k: 1	n:4950000
KS ci ratio: 2.771858e+00	ci left: 5.114709e-09	ci right 1.125584e-06	k: 1	n:4950000
TP53   4950000 perm   14765 sec   (335 perm/sec)   p_kst 2.020202e-07   p_cons 2.020202e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.437254e-07	k: 0	n:4960000
Cons ci ratio: 2.771858e+00	ci left: 5.104397e-09	ci right 1.123315e-06	k: 1	n:4960000
KS ci ratio: 2.771858e+00	ci left: 5.104397e-09	ci right 1.123315e-06	k: 1	n:4960000
TP53   4960000 perm   14815 sec   (335 perm/sec)   p_kst 2.016129e-07   p_cons 2.016129e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.422290e-07	k: 0	n:4970000
Cons ci ratio: 2.771858e+00	ci left: 5.094126e-09	ci right 1.121054e-06	k: 1	n:4970000
KS ci ratio: 2.771858e+00	ci left: 5.094126e-09	ci right 1.121054e-06	k: 1	n:4970000
TP53   4970000 perm   14866 sec   (334 perm/sec)   p_kst 2.012072e-07   p_cons 2.012072e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.407386e-07	k: 0	n:4980000
Cons ci ratio: 2.771858e+00	ci left: 5.083897e-09	ci right 1.118803e-06	k: 1	n:4980000
KS ci ratio: 2.771858e+00	ci left: 5.083897e-09	ci right 1.118803e-06	k: 1	n:4980000
TP53   4980000 perm   14917 sec   (334 perm/sec)   p_kst 2.008032e-07   p_cons 2.008032e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.392541e-07	k: 0	n:4990000
Cons ci ratio: 2.771858e+00	ci left: 5.073709e-09	ci right 1.116561e-06	k: 1	n:4990000
KS ci ratio: 2.771858e+00	ci left: 5.073709e-09	ci right 1.116561e-06	k: 1	n:4990000
TP53   4990000 perm   14967 sec   (333 perm/sec)   p_kst 2.004008e-07   p_cons 2.004008e-07   p_joint 0

Joint ci ratio: 3.919999e+00	ci left: 0	ci right 7.377756e-07	k: 0	n:5000000
Cons ci ratio: 2.771858e+00	ci left: 5.063562e-09	ci right 1.114328e-06	k: 1	n:5000000
KS ci ratio: 2.771858e+00	ci left: 5.063562e-09	ci right 1.114328e-06	k: 1	n:5000000
TP53   5000000 perm   15018 sec   (333 perm/sec)   p_kst 2.000000e-07   p_cons 2.000000e-07   p_joint 0

Outputting figure to mutsig2_images.part000000000180/TP53.122_1311_5000000_2e-07_2e-07_0.png
                gene_name: TP53
               theta_stop: 3.9 
                    nperm: 5000000 
                     p_ks: 2.00e-07 
        ci_ks_bounds_left: 5.06e-09 
       ci_ks_bounds_right: 1.11e-06 
                   p_cons: 2.00e-07 
      ci_cons_bounds_left: 5.06e-09 
     ci_cons_bounds_right: 1.11e-06 
                  p_joint: 0 
     ci_joint_bounds_left: 0 
    ci_joint_bounds_right: 7.38e-07 

Current progress: 2 percent done.
TNR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.832224e-02	ci left: 3.871924e-01	ci right 4.064677e-01	k: 3968	n:10000
Cons ci ratio: 2.741570e-02	ci left: 6.621957e-01	ci right 6.807043e-01	k: 6715	n:10000
KS ci ratio: 7.156145e-02	ci left: 2.224724e-01	ci right 2.390847e-01	k: 2307	n:10000
TNR   10000 perm   3 sec   (3824 perm/sec)   p_kst 2.307000e-01   p_cons 6.715000e-01   p_joint 3.968000e-01

Outputting figure to mutsig2_images.part000000000180/TNR.21_4161_10000_0.2307_0.6715_0.3968.png
                gene_name: TNR
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 4 percent done.
TPR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.101880e-02	ci left: 7.684076e-01	ci right 7.848309e-01	k: 7767	n:10000
Cons ci ratio: 1.757229e-02	ci left: 8.252379e-01	ci right 8.399678e-01	k: 8327	n:10000
KS ci ratio: 2.952506e-02	ci left: 6.284917e-01	ci right 6.474279e-01	k: 6380	n:10000
TPR   10000 perm   3 sec   (2907 perm/sec)   p_kst 6.380000e-01   p_cons 8.327000e-01   p_joint 7.767000e-01

Outputting figure to mutsig2_images.part000000000180/TPR.18_7296_10000_0.638_0.8327_0.7767.png
                gene_name: TPR
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 6 percent done.
TNXB
Processing conservation and coverage...
77% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.705138e-02	ci left: 3.114560e-01	ci right 3.298486e-01	k: 3206	n:10000
Cons ci ratio: 2.268002e-02	ci left: 7.405823e-01	ci right 7.576724e-01	k: 7492	n:10000
KS ci ratio: 8.241153e-02	ci left: 1.768418e-01	ci right 1.921425e-01	k: 1844	n:10000
TNXB   10000 perm   5 sec   (2196 perm/sec)   p_kst 1.844000e-01   p_cons 7.492000e-01   p_joint 3.206000e-01

Outputting figure to mutsig2_images.part000000000180/TNXB.17_12901_10000_0.1844_0.7492_0.3206.png
                gene_name: TNXB
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 8 percent done.
TP53BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.039249e-02	ci left: 2.282979e-01	ci right 2.450558e-01	k: 2366	n:10000
Cons ci ratio: 1.225593e-01	ci left: 8.708509e-02	ci right 9.855338e-02	k: 927	n:10000
KS ci ratio: 3.357336e-02	ci left: 5.670453e-01	ci right 5.865100e-01	k: 5768	n:10000
TP53BP1   10000 perm   3 sec   (3542 perm/sec)   p_kst 5.768000e-01   p_cons 9.270000e-02   p_joint 2.366000e-01

Joint ci ratio: 5.063775e-02	ci left: 2.246777e-01	ci right 2.364007e-01	k: 4610	n:20000
Cons ci ratio: 8.607760e-02	ci left: 8.989170e-02	ci right 9.802679e-02	k: 1878	n:20000
KS ci ratio: 2.407117e-02	ci left: 5.631541e-01	ci right 5.769256e-01	k: 11401	n:20000
TP53BP1   20000 perm   6 sec   (3192 perm/sec)   p_kst 5.700500e-01   p_cons 9.390000e-02   p_joint 2.305000e-01

Outputting figure to mutsig2_images.part000000000180/TP53BP1.16_6046_20000_0.57005_0.0939_0.2305.png
                gene_name: TP53BP1
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 10 percent done.
TNS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.128281e-01	ci left: 1.015915e-01	ci right 1.138381e-01	k: 1076	n:10000
Cons ci ratio: 3.035655e-01	ci left: 1.390981e-02	ci right 1.897755e-02	k: 163	n:10000
KS ci ratio: 1.180587e-02	ci left: 9.113176e-01	ci right 9.222382e-01	k: 9169	n:10000
TNS1   10000 perm   3 sec   (3428 perm/sec)   p_kst 9.169000e-01   p_cons 1.630000e-02   p_joint 1.076000e-01

Joint ci ratio: 7.581674e-02	ci left: 1.134122e-01	ci right 1.223992e-01	k: 2357	n:20000
Cons ci ratio: 2.184120e-01	ci left: 1.411743e-02	ci right 1.762537e-02	k: 316	n:20000
KS ci ratio: 8.790252e-03	ci left: 9.045725e-01	ci right 9.126083e-01	k: 18173	n:20000
TNS1   20000 perm   7 sec   (3074 perm/sec)   p_kst 9.086500e-01   p_cons 1.580000e-02   p_joint 1.178500e-01

Joint ci ratio: 6.115231e-02	ci left: 1.167706e-01	ci right 1.241697e-01	k: 3613	n:30000
Cons ci ratio: 1.786206e-01	ci left: 1.438741e-02	ci right 1.724081e-02	k: 473	n:30000
KS ci ratio: 7.354767e-03	ci left: 9.011183e-01	ci right 9.078032e-01	k: 27135	n:30000
TNS1   30000 perm   10 sec   (2942 perm/sec)   p_kst 9.045000e-01   p_cons 1.576667e-02   p_joint 1.204333e-01

Joint ci ratio: 6.059123e-02	ci left: 9.184760e-02	ci right 9.761138e-02	k: 3788	n:40000
Cons ci ratio: 1.640395e-01	ci left: 1.291947e-02	ci right 1.525186e-02	k: 562	n:40000
KS ci ratio: 6.383059e-03	ci left: 9.011978e-01	ci right 9.069934e-01	k: 36165	n:40000
TNS1   40000 perm   14 sec   (2862 perm/sec)   p_kst 9.041250e-01   p_cons 1.405000e-02   p_joint 9.470000e-02

Joint ci ratio: 5.119803e-02	ci left: 1.022469e-01	ci right 1.076391e-01	k: 5246	n:50000
Cons ci ratio: 1.445244e-01	ci left: 1.345118e-02	ci right 1.556574e-02	k: 724	n:50000
KS ci ratio: 5.680237e-03	ci left: 9.023963e-01	ci right 9.075565e-01	k: 45250	n:50000
TNS1   50000 perm   18 sec   (2810 perm/sec)   p_kst 9.050000e-01   p_cons 1.448000e-02   p_joint 1.049200e-01

Joint ci ratio: 4.836878e-02	ci left: 9.627513e-02	ci right 1.010638e-01	k: 5919	n:60000
Cons ci ratio: 1.305685e-01	ci left: 1.383286e-02	ci right 1.578115e-02	k: 887	n:60000
KS ci ratio: 5.197319e-03	ci left: 9.022215e-01	ci right 9.069393e-01	k: 54276	n:60000
TNS1   60000 perm   22 sec   (2762 perm/sec)   p_kst 9.046000e-01   p_cons 1.478333e-02   p_joint 9.865000e-02

Joint ci ratio: 4.709994e-02	ci left: 8.791812e-02	ci right 9.217307e-02	k: 6302	n:70000
Cons ci ratio: 1.219630e-01	ci left: 1.365519e-02	ci right 1.544253e-02	k: 1017	n:70000
KS ci ratio: 4.812145e-03	ci left: 9.023854e-01	ci right 9.067524e-01	k: 63321	n:70000
TNS1   70000 perm   25 sec   (2748 perm/sec)   p_kst 9.045857e-01   p_cons 1.452857e-02   p_joint 9.002857e-02

Joint ci ratio: 4.333920e-02	ci left: 9.076079e-02	ci right 9.479379e-02	k: 7421	n:80000
Cons ci ratio: 1.138098e-01	ci left: 1.378023e-02	ci right 1.545525e-02	k: 1168	n:80000
KS ci ratio: 4.521456e-03	ci left: 9.017484e-01	ci right 9.058472e-01	k: 72305	n:80000
TNS1   80000 perm   29 sec   (2733 perm/sec)   p_kst 9.038125e-01   p_cons 1.460000e-02   p_joint 9.276250e-02

Joint ci ratio: 4.043171e-02	ci left: 9.265147e-02	ci right 9.648582e-02	k: 8510	n:90000
Cons ci ratio: 1.074306e-01	ci left: 1.379404e-02	ci right 1.537081e-02	k: 1311	n:90000
KS ci ratio: 3.480251e-03	ci left: 9.321223e-01	ci right 9.353830e-01	k: 84039	n:90000
TNS1   90000 perm   33 sec   (2712 perm/sec)   p_kst 9.337667e-01   p_cons 1.456667e-02   p_joint 9.455556e-02

Joint ci ratio: 3.722548e-02	ci left: 9.795881e-02	ci right 1.016844e-01	k: 9981	n:100000
Cons ci ratio: 1.018389e-01	ci left: 1.385594e-02	ci right 1.535241e-02	k: 1459	n:100000
KS ci ratio: 3.290591e-03	ci left: 9.326255e-01	ci right 9.357093e-01	k: 93418	n:100000
TNS1   100000 perm   37 sec   (2689 perm/sec)   p_kst 9.341800e-01   p_cons 1.459000e-02   p_joint 9.981000e-02

Joint ci ratio: 3.457712e-02	ci left: 1.028064e-01	ci right 1.064327e-01	k: 11507	n:110000
Cons ci ratio: 9.725340e-02	ci left: 1.384622e-02	ci right 1.527045e-02	k: 1600	n:110000
KS ci ratio: 3.140175e-03	ci left: 9.325902e-01	ci right 9.355323e-01	k: 102748	n:110000
TNS1   110000 perm   41 sec   (2663 perm/sec)   p_kst 9.340727e-01   p_cons 1.454545e-02   p_joint 1.046091e-01

Outputting figure to mutsig2_images.part000000000180/TNS1.14_5320_110000_0.93407_0.014545_0.10461.png
                gene_name: TNS1
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 12 percent done.
TNRC6A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.270466e-02	ci left: 8.990845e-01	ci right 9.106784e-01	k: 9050	n:10000
KS ci ratio: 6.453391e-03	ci left: 9.703722e-01	ci right 9.767479e-01	k: 9737	n:10000
TNRC6A   10000 perm   3 sec   (3743 perm/sec)   p_kst 9.737000e-01   p_cons 9.050000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000180/TNRC6A.11_5989_10000_0.9737_0.905_1.png
                gene_name: TNRC6A
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
TPO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.535527e-02	ci left: 4.177760e-01	ci right 4.372662e-01	k: 4275	n:10000
Cons ci ratio: 7.296213e-03	ci left: 9.628897e-01	ci right 9.700352e-01	k: 9666	n:10000
KS ci ratio: 6.726746e-02	ci left: 2.448978e-01	ci right 2.620461e-01	k: 2534	n:10000
TPO   10000 perm   2 sec   (4794 perm/sec)   p_kst 2.534000e-01   p_cons 9.666000e-01   p_joint 4.275000e-01

Outputting figure to mutsig2_images.part000000000180/TPO.11_2866_10000_0.2534_0.9666_0.4275.png
                gene_name: TPO
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 16 percent done.
TOPORS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.088478e-01	ci left: 1.085172e-01	ci right 1.211081e-01	k: 1147	n:10000
Cons ci ratio: 9.038799e-02	ci left: 1.510978e-01	ci right 1.655018e-01	k: 1582	n:10000
KS ci ratio: 1.031447e-01	ci left: 1.196532e-01	ci right 1.327654e-01	k: 1261	n:10000
TOPORS   10000 perm   2 sec   (4507 perm/sec)   p_kst 1.261000e-01   p_cons 1.582000e-01   p_joint 1.147000e-01

Joint ci ratio: 8.378394e-02	ci left: 9.450185e-02	ci right 1.028153e-01	k: 1972	n:20000
Cons ci ratio: 6.549509e-02	ci left: 1.469022e-01	ci right 1.568992e-01	k: 3037	n:20000
KS ci ratio: 7.194405e-02	ci left: 1.245805e-01	ci right 1.339276e-01	k: 2584	n:20000
TOPORS   20000 perm   5 sec   (4072 perm/sec)   p_kst 1.292000e-01   p_cons 1.518500e-01   p_joint 9.860000e-02

Outputting figure to mutsig2_images.part000000000180/TOPORS.10_3150_20000_0.1292_0.15185_0.0986.png
                gene_name: TOPORS
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 18 percent done.
TOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.301068e-01	ci left: 2.494902e-02	ci right 3.152965e-02	k: 281	n:10000
Cons ci ratio: 5.766130e-01	ci left: 3.284168e-03	ci right 6.016771e-03	k: 45	n:10000
KS ci ratio: 1.100425e-01	ci left: 1.063704e-01	ci right 1.188563e-01	k: 1125	n:10000
TOX   10000 perm   2 sec   (5101 perm/sec)   p_kst 1.125000e-01   p_cons 4.500000e-03   p_joint 2.810000e-02

Joint ci ratio: 1.723925e-01	ci left: 2.302419e-02	ci right 2.741533e-02	k: 503	n:20000
Cons ci ratio: 4.429753e-01	ci left: 3.039518e-03	ci right 4.809524e-03	k: 77	n:20000
KS ci ratio: 7.852226e-02	ci left: 1.064325e-01	ci right 1.151810e-01	k: 2215	n:20000
TOX   20000 perm   4 sec   (4533 perm/sec)   p_kst 1.107500e-01   p_cons 3.850000e-03   p_joint 2.515000e-02

Joint ci ratio: 1.771081e-01	ci left: 1.464237e-02	ci right 1.751912e-02	k: 481	n:30000
Cons ci ratio: 3.782780e-01	ci left: 2.893683e-03	ci right 4.271882e-03	k: 106	n:30000
KS ci ratio: 6.426585e-02	ci left: 1.067763e-01	ci right 1.138993e-01	k: 3309	n:30000
TOX   30000 perm   7 sec   (4309 perm/sec)   p_kst 1.103000e-01   p_cons 3.533333e-03   p_joint 1.603333e-02

Joint ci ratio: 1.423696e-01	ci left: 1.727438e-02	ci right 1.994616e-02	k: 743	n:40000
Cons ci ratio: 3.249437e-01	ci left: 3.036855e-03	ci right 4.236984e-03	k: 144	n:40000
KS ci ratio: 5.609512e-02	ci left: 1.057397e-01	ci right 1.118672e-01	k: 4351	n:40000
TOX   40000 perm   10 sec   (4179 perm/sec)   p_kst 1.087750e-01   p_cons 3.600000e-03   p_joint 1.857500e-02

Joint ci ratio: 1.511105e-01	ci left: 1.227572e-02	ci right 1.430138e-02	k: 663	n:50000
Cons ci ratio: 2.941203e-01	ci left: 3.019884e-03	ci right 4.079046e-03	k: 176	n:50000
KS ci ratio: 5.027686e-02	ci left: 1.056680e-01	ci right 1.111375e-01	k: 5419	n:50000
TOX   50000 perm   12 sec   (4067 perm/sec)   p_kst 1.083800e-01   p_cons 3.520000e-03   p_joint 1.326000e-02

Joint ci ratio: 1.472941e-01	ci left: 1.080675e-02	ci right 1.254097e-02	k: 699	n:60000
Cons ci ratio: 2.668602e-01	ci left: 3.105472e-03	ci right 4.076854e-03	k: 214	n:60000
KS ci ratio: 4.576230e-02	ci left: 1.064675e-01	ci right 1.114704e-01	k: 6537	n:60000
TOX   60000 perm   15 sec   (3972 perm/sec)   p_kst 1.089500e-01   p_cons 3.566667e-03   p_joint 1.165000e-02

Joint ci ratio: 1.378849e-01	ci left: 1.062673e-02	ci right 1.221416e-02	k: 798	n:70000
Cons ci ratio: 2.474777e-01	ci left: 3.129649e-03	ci right 4.026563e-03	k: 249	n:70000
KS ci ratio: 4.245729e-02	ci left: 1.062476e-01	ci right 1.108706e-01	k: 7598	n:70000
TOX   70000 perm   18 sec   (3887 perm/sec)   p_kst 1.085429e-01   p_cons 3.557143e-03   p_joint 1.140000e-02

Joint ci ratio: 1.379845e-01	ci left: 9.297941e-03	ci right 1.068794e-02	k: 798	n:80000
Cons ci ratio: 2.317853e-01	ci left: 3.149702e-03	ci right 3.986936e-03	k: 284	n:80000
KS ci ratio: 3.985062e-02	ci left: 1.057457e-01	ci right 1.100578e-01	k: 8631	n:80000
TOX   80000 perm   21 sec   (3835 perm/sec)   p_kst 1.078875e-01   p_cons 3.550000e-03   p_joint 9.975000e-03

Joint ci ratio: 1.353533e-01	ci left: 8.608024e-03	ci right 9.868356e-03	k: 830	n:90000
Cons ci ratio: 2.163811e-01	ci left: 3.240251e-03	ci right 4.036714e-03	k: 326	n:90000
KS ci ratio: 3.760193e-02	ci left: 1.057149e-01	ci right 1.097771e-01	k: 9696	n:90000
TOX   90000 perm   24 sec   (3788 perm/sec)   p_kst 1.077333e-01   p_cons 3.622222e-03   p_joint 9.222222e-03

Joint ci ratio: 1.345215e-01	ci left: 7.853300e-03	ci right 8.995488e-03	k: 841	n:100000
Cons ci ratio: 2.036892e-01	ci left: 3.314164e-03	ci right 4.075070e-03	k: 368	n:100000
KS ci ratio: 3.553654e-02	ci left: 1.065490e-01	ci right 1.104138e-01	k: 10847	n:100000
TOX   100000 perm   27 sec   (3736 perm/sec)   p_kst 1.084700e-01   p_cons 3.680000e-03   p_joint 8.410000e-03

Joint ci ratio: 9.271517e-02	ci left: 1.524897e-02	ci right 1.674034e-02	k: 1758	n:110000
Cons ci ratio: 1.953974e-01	ci left: 3.289251e-03	ci right 4.010036e-03	k: 400	n:110000
KS ci ratio: 3.385064e-02	ci left: 1.068213e-01	ci right 1.105085e-01	k: 11952	n:110000
TOX   110000 perm   30 sec   (3685 perm/sec)   p_kst 1.086545e-01   p_cons 3.636364e-03   p_joint 1.598182e-02

Joint ci ratio: 1.059676e-01	ci left: 1.067717e-02	ci right 1.187996e-02	k: 1352	n:120000
Cons ci ratio: 1.856897e-01	ci left: 3.356406e-03	ci right 4.051251e-03	k: 443	n:120000
KS ci ratio: 3.179148e-02	ci left: 1.106595e-01	ci right 1.142426e-01	k: 13493	n:120000
TOX   120000 perm   33 sec   (3635 perm/sec)   p_kst 1.124417e-01   p_cons 3.691667e-03   p_joint 1.126667e-02

Joint ci ratio: 8.929488e-02	ci left: 1.395498e-02	ci right 1.526680e-02	k: 1898	n:130000
Cons ci ratio: 1.778491e-01	ci left: 3.391923e-03	ci right 4.061283e-03	k: 483	n:130000
KS ci ratio: 3.056489e-02	ci left: 1.105961e-01	ci right 1.140366e-01	k: 14600	n:130000
TOX   130000 perm   36 sec   (3587 perm/sec)   p_kst 1.123077e-01   p_cons 3.715385e-03   p_joint 1.460000e-02

Joint ci ratio: 9.253088e-02	ci left: 1.207112e-02	ci right 1.324919e-02	k: 1771	n:140000
Cons ci ratio: 1.704356e-01	ci left: 3.443410e-03	ci right 4.091695e-03	k: 526	n:140000
KS ci ratio: 2.946802e-02	ci left: 1.105583e-01	ci right 1.138720e-01	k: 15709	n:140000
TOX   140000 perm   40 sec   (3539 perm/sec)   p_kst 1.122071e-01   p_cons 3.757143e-03   p_joint 1.265000e-02

Joint ci ratio: 9.356396e-02	ci left: 1.102517e-02	ci right 1.211383e-02	k: 1734	n:150000
Cons ci ratio: 1.635901e-01	ci left: 3.501322e-03	ci right 4.131430e-03	k: 571	n:150000
KS ci ratio: 2.843186e-02	ci left: 1.108720e-01	ci right 1.140763e-01	k: 16870	n:150000
TOX   150000 perm   43 sec   (3488 perm/sec)   p_kst 1.124667e-01   p_cons 3.806667e-03   p_joint 1.156000e-02

Joint ci ratio: 8.424918e-02	ci left: 1.278723e-02	ci right 1.391800e-02	k: 2135	n:160000
Cons ci ratio: 1.369610e-01	ci left: 4.744764e-03	ci right 5.448354e-03	k: 814	n:160000
KS ci ratio: 2.751589e-02	ci left: 1.110178e-01	ci right 1.141213e-01	k: 18010	n:160000
TOX   160000 perm   47 sec   (3425 perm/sec)   p_kst 1.125625e-01   p_cons 5.087500e-03   p_joint 1.334375e-02

Joint ci ratio: 7.747591e-02	ci left: 1.426019e-02	ci right 1.541527e-02	k: 2521	n:170000
Cons ci ratio: 1.334881e-01	ci left: 4.710038e-03	ci right 5.389362e-03	k: 857	n:170000
KS ci ratio: 2.674293e-02	ci left: 1.107034e-01	ci right 1.137099e-01	k: 19074	n:170000
TOX   170000 perm   50 sec   (3379 perm/sec)   p_kst 1.122000e-01   p_cons 5.041176e-03   p_joint 1.482941e-02

Joint ci ratio: 7.716768e-02	ci left: 1.358763e-02	ci right 1.468365e-02	k: 2543	n:180000
Cons ci ratio: 1.294746e-01	ci left: 4.738507e-03	ci right 5.399810e-03	k: 911	n:180000
KS ci ratio: 2.596923e-02	ci left: 1.109001e-01	ci right 1.138235e-01	k: 20224	n:180000
TOX   180000 perm   54 sec   (3337 perm/sec)   p_kst 1.123556e-01   p_cons 5.061111e-03   p_joint 1.412778e-02

Joint ci ratio: 7.463635e-02	ci left: 1.377611e-02	ci right 1.484931e-02	k: 2718	n:190000
Cons ci ratio: 1.313128e-01	ci left: 4.361769e-03	ci right 4.979809e-03	k: 886	n:190000
KS ci ratio: 2.527567e-02	ci left: 1.109464e-01	ci right 1.137917e-01	k: 21349	n:190000
TOX   190000 perm   58 sec   (3294 perm/sec)   p_kst 1.123632e-01   p_cons 4.663158e-03   p_joint 1.430526e-02

Joint ci ratio: 7.241490e-02	ci left: 1.391681e-02	ci right 1.496733e-02	k: 2887	n:200000
Cons ci ratio: 1.219465e-01	ci left: 4.826444e-03	ci right 5.458030e-03	k: 1027	n:200000
KS ci ratio: 2.465340e-02	ci left: 1.108398e-01	ci right 1.136114e-01	k: 22444	n:200000
TOX   200000 perm   61 sec   (3252 perm/sec)   p_kst 1.122200e-01   p_cons 5.135000e-03   p_joint 1.443500e-02

Joint ci ratio: 7.140682e-02	ci left: 1.364216e-02	ci right 1.465703e-02	k: 2970	n:210000
Cons ci ratio: 1.186985e-01	ci left: 4.859878e-03	ci right 5.477711e-03	k: 1084	n:210000
KS ci ratio: 2.404906e-02	ci left: 1.109573e-01	ci right 1.136629e-01	k: 23584	n:210000
TOX   210000 perm   65 sec   (3207 perm/sec)   p_kst 1.123048e-01   p_cons 5.161905e-03   p_joint 1.414286e-02

Joint ci ratio: 6.935346e-02	ci left: 1.381696e-02	ci right 1.481408e-02	k: 3148	n:220000
Cons ci ratio: 1.162095e-01	ci left: 4.846332e-03	ci right 5.448637e-03	k: 1131	n:220000
KS ci ratio: 2.347532e-02	ci left: 1.111644e-01	ci right 1.138095e-01	k: 24746	n:220000
TOX   220000 perm   70 sec   (3165 perm/sec)   p_kst 1.124818e-01   p_cons 5.140909e-03   p_joint 1.430909e-02

Joint ci ratio: 6.719141e-02	ci left: 1.409238e-02	ci right 1.507643e-02	k: 3353	n:230000
Cons ci ratio: 1.131972e-01	ci left: 4.893237e-03	ci right 5.484555e-03	k: 1192	n:230000
KS ci ratio: 2.297276e-02	ci left: 1.110773e-01	ci right 1.136630e-01	k: 25844	n:230000
TOX   230000 perm   74 sec   (3125 perm/sec)   p_kst 1.123652e-01   p_cons 5.182609e-03   p_joint 1.457826e-02

Joint ci ratio: 6.220129e-02	ci left: 1.577254e-02	ci right 1.678919e-02	k: 3906	n:240000
Cons ci ratio: 1.112128e-01	ci left: 4.863487e-03	ci right 5.440230e-03	k: 1235	n:240000
KS ci ratio: 2.250632e-02	ci left: 1.109524e-01	ci right 1.134820e-01	k: 26931	n:240000
TOX   240000 perm   78 sec   (3086 perm/sec)   p_kst 1.122125e-01   p_cons 5.145833e-03   p_joint 1.627500e-02

Joint ci ratio: 5.683024e-02	ci left: 1.814497e-02	ci right 1.921023e-02	k: 4668	n:250000
Cons ci ratio: 1.092434e-01	ci left: 4.843982e-03	ci right 5.407585e-03	k: 1280	n:250000
KS ci ratio: 2.207429e-02	ci left: 1.107743e-01	ci right 1.132508e-01	k: 28002	n:250000
TOX   250000 perm   82 sec   (3047 perm/sec)   p_kst 1.120080e-01   p_cons 5.120000e-03   p_joint 1.867200e-02

Joint ci ratio: 5.498559e-02	ci left: 1.864561e-02	ci right 1.970361e-02	k: 4984	n:260000
Cons ci ratio: 1.073343e-01	ci left: 4.829804e-03	ci right 5.381317e-03	k: 1326	n:260000
KS ci ratio: 2.165069e-02	ci left: 1.107519e-01	ci right 1.131798e-01	k: 29110	n:260000
TOX   260000 perm   86 sec   (3009 perm/sec)   p_kst 1.119615e-01   p_cons 5.100000e-03   p_joint 1.916923e-02

Joint ci ratio: 5.266904e-02	ci left: 1.957394e-02	ci right 2.063640e-02	k: 5427	n:270000
Cons ci ratio: 1.053678e-01	ci left: 4.831182e-03	ci right 5.372118e-03	k: 1376	n:270000
KS ci ratio: 2.123556e-02	ci left: 1.108718e-01	ci right 1.132551e-01	k: 30256	n:270000
TOX   270000 perm   91 sec   (2973 perm/sec)   p_kst 1.120593e-01   p_cons 5.096296e-03   p_joint 2.010000e-02

Joint ci ratio: 5.238893e-02	ci left: 1.908974e-02	ci right 2.012024e-02	k: 5488	n:280000
Cons ci ratio: 1.037984e-01	ci left: 4.804712e-03	ci right 5.334183e-03	k: 1418	n:280000
KS ci ratio: 2.086850e-02	ci left: 1.107452e-01	ci right 1.130842e-01	k: 31335	n:280000
TOX   280000 perm   95 sec   (2937 perm/sec)   p_kst 1.119107e-01   p_cons 5.064286e-03   p_joint 1.960000e-02

Joint ci ratio: 5.172907e-02	ci left: 1.891471e-02	ci right 1.992251e-02	k: 5630	n:290000
Cons ci ratio: 1.021217e-01	ci left: 4.796927e-03	ci right 5.316488e-03	k: 1465	n:290000
KS ci ratio: 2.051484e-02	ci left: 1.106759e-01	ci right 1.129733e-01	k: 32428	n:290000
TOX   290000 perm   100 sec   (2899 perm/sec)   p_kst 1.118207e-01   p_cons 5.051724e-03   p_joint 1.941379e-02

Joint ci ratio: 5.008124e-02	ci left: 1.951188e-02	ci right 2.051743e-02	k: 6003	n:300000
Cons ci ratio: 1.005236e-01	ci left: 4.789725e-03	ci right 5.299909e-03	k: 1512	n:300000
KS ci ratio: 2.019113e-02	ci left: 1.104886e-01	ci right 1.127456e-01	k: 33484	n:300000
TOX   300000 perm   105 sec   (2857 perm/sec)   p_kst 1.116133e-01   p_cons 5.040000e-03   p_joint 2.001000e-02

Joint ci ratio: 4.925121e-02	ci left: 1.953236e-02	ci right 2.052180e-02	k: 6207	n:310000
Cons ci ratio: 9.874411e-02	ci left: 4.808218e-03	ci right 5.310780e-03	k: 1567	n:310000
KS ci ratio: 1.987611e-02	ci left: 1.103748e-01	ci right 1.125938e-01	k: 34559	n:310000
TOX   310000 perm   110 sec   (2824 perm/sec)   p_kst 1.114806e-01   p_cons 5.054839e-03   p_joint 2.002258e-02

Outputting figure to mutsig2_images.part000000000180/TOX.10_1617_310000_0.11148_0.0050548_0.020023.png
                gene_name: TOX
               theta_stop: 0.099 
                    nperm: 310000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.0051 
      ci_cons_bounds_left: 0.0048 
     ci_cons_bounds_right: 0.0053 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 20 percent done.
TPP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.240530e-02	ci left: 4.508931e-01	ci right 4.705298e-01	k: 4607	n:10000
Cons ci ratio: 2.371229e-02	ci left: 7.233032e-01	ci right 7.407614e-01	k: 7321	n:10000
KS ci ratio: 5.577984e-02	ci left: 3.212809e-01	ci right 3.398179e-01	k: 3305	n:10000
TPP2   10000 perm   2 sec   (4219 perm/sec)   p_kst 3.305000e-01   p_cons 7.321000e-01   p_joint 4.607000e-01

Outputting figure to mutsig2_images.part000000000180/TPP2.10_3866_10000_0.3305_0.7321_0.4607.png
                gene_name: TPP2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 22 percent done.
TOP2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.382332e-02	ci left: 4.346283e-01	ci right 4.542041e-01	k: 4444	n:10000
Cons ci ratio: 2.260159e-02	ci left: 7.418966e-01	ci right 7.589573e-01	k: 7505	n:10000
KS ci ratio: 7.041197e-02	ci left: 2.281991e-01	ci right 2.449546e-01	k: 2365	n:10000
TOP2B   10000 perm   2 sec   (4018 perm/sec)   p_kst 2.365000e-01   p_cons 7.505000e-01   p_joint 4.444000e-01

Outputting figure to mutsig2_images.part000000000180/TOP2B.9_5010_10000_0.2365_0.7505_0.4444.png
                gene_name: TOP2B
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 24 percent done.
TP63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.728785e-02	ci left: 8.298162e-01	ci right 8.443869e-01	k: 8372	n:10000
KS ci ratio: 7.228335e-03	ci left: 9.635202e-01	ci right 9.706043e-01	k: 9672	n:10000
TP63   10000 perm   2 sec   (4733 perm/sec)   p_kst 9.672000e-01   p_cons 8.372000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000180/TP63.9_2264_10000_0.9672_0.8372_1.png
                gene_name: TP63
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
TOP1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.460375e-02	ci left: 3.307132e-01	ci right 3.493801e-01	k: 3400	n:10000
Cons ci ratio: 4.141202e-02	ci left: 4.626742e-01	ci right 4.823418e-01	k: 4725	n:10000
KS ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
TOP1   10000 perm   2 sec   (4814 perm/sec)   p_kst 1.336000e-01   p_cons 4.725000e-01   p_joint 3.400000e-01

Outputting figure to mutsig2_images.part000000000180/TOP1.7_2382_10000_0.1336_0.4725_0.34.png
                gene_name: TOP1
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 28 percent done.
TPH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.074454e-02	ci left: 6.094987e-01	ci right 6.286319e-01	k: 6191	n:10000
Cons ci ratio: 6.196701e-02	ci left: 2.768594e-01	ci right 2.946656e-01	k: 2857	n:10000
KS ci ratio: 1.815547e-02	ci left: 8.157822e-01	ci right 8.308289e-01	k: 8234	n:10000
TPH2   10000 perm   2 sec   (5320 perm/sec)   p_kst 8.234000e-01   p_cons 2.857000e-01   p_joint 6.191000e-01

Outputting figure to mutsig2_images.part000000000180/TPH2.8_1517_10000_0.8234_0.2857_0.6191.png
                gene_name: TPH2
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 30 percent done.
TNRC6B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.779877e-02	ci left: 1.588536e-01	ci right 1.735414e-01	k: 1661	n:10000
Cons ci ratio: 1.037541e-02	ci left: 9.295765e-01	ci right 9.393685e-01	k: 9346	n:10000
KS ci ratio: 1.474582e-01	ci left: 6.111415e-02	ci right 7.094050e-02	k: 659	n:10000
TNRC6B   10000 perm   3 sec   (3945 perm/sec)   p_kst 6.590000e-02   p_cons 9.346000e-01   p_joint 1.661000e-01

Joint ci ratio: 7.733037e-02	ci left: 1.094302e-01	ci right 1.182824e-01	k: 2276	n:20000
Cons ci ratio: 7.468471e-03	ci left: 9.287811e-01	ci right 9.357926e-01	k: 18647	n:20000
KS ci ratio: 1.065803e-01	ci left: 5.996397e-02	ci right 6.676366e-02	k: 1266	n:20000
TNRC6B   20000 perm   6 sec   (3564 perm/sec)   p_kst 6.330000e-02   p_cons 9.323500e-01   p_joint 1.138000e-01

Joint ci ratio: 5.880775e-02	ci left: 1.251934e-01	ci right 1.328119e-01	k: 3869	n:30000
Cons ci ratio: 6.176780e-03	ci left: 9.277676e-01	ci right 9.335487e-01	k: 27921	n:30000
KS ci ratio: 8.609578e-02	ci left: 6.184395e-02	ci right 6.744073e-02	k: 1938	n:30000
TNRC6B   30000 perm   9 sec   (3355 perm/sec)   p_kst 6.460000e-02   p_cons 9.307000e-01   p_joint 1.289667e-01

Outputting figure to mutsig2_images.part000000000180/TNRC6B.7_5715_30000_0.0646_0.9307_0.12897.png
                gene_name: TNRC6B
               theta_stop: 0.086 
                    nperm: 30000 
                     p_ks: 0.065 
        ci_ks_bounds_left: 0.062 
       ci_ks_bounds_right: 0.067 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 32 percent done.
TNRC6C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.201841e-02	ci left: 3.526716e-01	ci right 3.716088e-01	k: 3621	n:10000
Cons ci ratio: 1.666254e-02	ci left: 8.397935e-01	ci right 8.540038e-01	k: 8470	n:10000
KS ci ratio: 6.553540e-02	ci left: 2.547867e-01	ci right 2.721513e-01	k: 2634	n:10000
TNRC6C   10000 perm   3 sec   (3992 perm/sec)   p_kst 2.634000e-01   p_cons 8.470000e-01   p_joint 3.621000e-01

Outputting figure to mutsig2_images.part000000000180/TNRC6C.6_5266_10000_0.2634_0.847_0.3621.png
                gene_name: TNRC6C
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 34 percent done.
TNS3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.536584e-01	ci left: 5.638760e-02	ci right 6.587006e-02	k: 610	n:10000
Cons ci ratio: 3.624069e-02	ci left: 5.292700e-01	ci right 5.489072e-01	k: 5391	n:10000
KS ci ratio: 1.680497e-01	ci left: 4.724933e-02	ci right 5.601420e-02	k: 515	n:10000
TNS3   10000 perm   2 sec   (4000 perm/sec)   p_kst 5.150000e-02   p_cons 5.391000e-01   p_joint 6.100000e-02

Joint ci ratio: 9.076681e-02	ci left: 8.141531e-02	ci right 8.920575e-02	k: 1705	n:20000
Cons ci ratio: 2.517985e-02	ci left: 5.409207e-01	ci right 5.547653e-01	k: 10957	n:20000
KS ci ratio: 1.173406e-01	ci left: 4.974084e-02	ci right 5.598996e-02	k: 1056	n:20000
TNS3   20000 perm   5 sec   (3678 perm/sec)   p_kst 5.280000e-02   p_cons 5.478500e-01   p_joint 8.525000e-02

Joint ci ratio: 8.780254e-02	ci left: 5.955813e-02	ci right 6.506034e-02	k: 1868	n:30000
Cons ci ratio: 2.054795e-02	ci left: 5.424806e-01	ci right 5.537768e-01	k: 16444	n:30000
KS ci ratio: 9.620999e-02	ci left: 4.990524e-02	ci right 5.498188e-02	k: 1572	n:30000
TNS3   30000 perm   9 sec   (3502 perm/sec)   p_kst 5.240000e-02   p_cons 5.481333e-01   p_joint 6.226667e-02

Outputting figure to mutsig2_images.part000000000180/TNS3.6_4442_30000_0.0524_0.54813_0.062267.png
                gene_name: TNS3
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.065 

Current progress: 36 percent done.
TOP3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.885064e-02	ci left: 8.044048e-01	ci right 8.198129e-01	k: 8122	n:10000
Cons ci ratio: 4.264498e-02	ci left: 4.480984e-01	ci right 4.677261e-01	k: 4579	n:10000
KS ci ratio: 2.849757e-02	ci left: 6.447840e-01	ci right 6.635261e-01	k: 6542	n:10000
TOP3A   10000 perm   2 sec   (5172 perm/sec)   p_kst 6.542000e-01   p_cons 4.579000e-01   p_joint 8.122000e-01

Outputting figure to mutsig2_images.part000000000180/TOP3A.6_3082_10000_0.6542_0.4579_0.8122.png
                gene_name: TOP3A
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 38 percent done.
TOX4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.152098e-02	ci left: 7.600043e-01	ci right 7.766391e-01	k: 7684	n:10000
Cons ci ratio: 4.686731e-03	ci left: 9.835003e-01	ci right 9.882104e-01	k: 9860	n:10000
KS ci ratio: 5.390563e-02	ci left: 3.364739e-01	ci right 3.552160e-01	k: 3458	n:10000
TOX4   10000 perm   2 sec   (5489 perm/sec)   p_kst 3.458000e-01   p_cons 9.860000e-01   p_joint 7.684000e-01

Outputting figure to mutsig2_images.part000000000180/TOX4.6_1902_10000_0.3458_0.986_0.7684.png
                gene_name: TOX4
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 40 percent done.
TP53BP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.932758e-02	ci left: 4.884519e-01	ci right 5.081491e-01	k: 4983	n:10000
Cons ci ratio: 1.112712e-01	ci left: 1.042243e-01	ci right 1.166037e-01	k: 1103	n:10000
KS ci ratio: 1.457434e-02	ci left: 8.720385e-01	ci right 8.849402e-01	k: 8786	n:10000
TP53BP2   10000 perm   2 sec   (4761 perm/sec)   p_kst 8.786000e-01   p_cons 1.103000e-01   p_joint 4.983000e-01

Joint ci ratio: 3.151030e-02	ci left: 4.293118e-01	ci right 4.431067e-01	k: 8724	n:20000
Cons ci ratio: 7.930929e-02	ci left: 1.045165e-01	ci right 1.131975e-01	k: 2176	n:20000
KS ci ratio: 1.036964e-02	ci left: 8.726223e-01	ci right 8.817678e-01	k: 17545	n:20000
TP53BP2   20000 perm   5 sec   (4252 perm/sec)   p_kst 8.772500e-01   p_cons 1.088000e-01   p_joint 4.362000e-01

Outputting figure to mutsig2_images.part000000000180/TP53BP2.6_3477_20000_0.87725_0.1088_0.4362.png
                gene_name: TP53BP2
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.44 

Current progress: 42 percent done.
TPM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.276929e-02	ci left: 1.755630e-01	ci right 1.908220e-01	k: 1831	n:10000
Cons ci ratio: 1.682216e-01	ci left: 4.715334e-02	ci right 5.591026e-02	k: 514	n:10000
KS ci ratio: 8.585952e-03	ci left: 9.500226e-01	ci right 9.583102e-01	k: 9543	n:10000
TPM2   10000 perm   2 sec   (5978 perm/sec)   p_kst 9.543000e-01   p_cons 5.140000e-02   p_joint 1.831000e-01

Joint ci ratio: 5.875341e-02	ci left: 1.766741e-01	ci right 1.874185e-01	k: 3640	n:20000
Cons ci ratio: 1.203141e-01	ci left: 4.736004e-02	ci right 5.347151e-02	k: 1007	n:20000
KS ci ratio: 6.213038e-03	ci left: 9.491519e-01	ci right 9.551158e-01	k: 19044	n:20000
TPM2   20000 perm   4 sec   (5264 perm/sec)   p_kst 9.522000e-01   p_cons 5.035000e-02   p_joint 1.820000e-01

Joint ci ratio: 4.415796e-02	ci left: 2.034189e-01	ci right 2.126377e-01	k: 6240	n:30000
Cons ci ratio: 9.830525e-02	ci left: 4.785375e-02	ci right 5.283379e-02	k: 1509	n:30000
KS ci ratio: 5.211732e-03	ci left: 9.471321e-01	ci right 9.521137e-01	k: 28490	n:30000
TPM2   30000 perm   6 sec   (4990 perm/sec)   p_kst 9.496667e-01   p_cons 5.030000e-02   p_joint 2.080000e-01

Outputting figure to mutsig2_images.part000000000180/TPM2.6_1058_30000_0.94967_0.0503_0.208.png
                gene_name: TPM2
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 44 percent done.
TPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.560388e-02	ci left: 3.226707e-01	ci right 3.412273e-01	k: 3319	n:10000
Cons ci ratio: 5.311696e-02	ci left: 3.431304e-01	ci right 3.619556e-01	k: 3525	n:10000
KS ci ratio: 7.505740e-02	ci left: 2.061931e-01	ci right 2.223737e-01	k: 2142	n:10000
TPP1   10000 perm   2 sec   (5361 perm/sec)   p_kst 2.142000e-01   p_cons 3.525000e-01   p_joint 3.319000e-01

Outputting figure to mutsig2_images.part000000000180/TPP1.6_1744_10000_0.2142_0.3525_0.3319.png
                gene_name: TPP1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 46 percent done.
TOP2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.275514e-02	ci left: 5.790813e-01	ci right 5.984670e-01	k: 5888	n:10000
Cons ci ratio: 2.917451e-02	ci left: 6.340217e-01	ci right 6.528946e-01	k: 6435	n:10000
KS ci ratio: 4.780142e-02	ci left: 3.923700e-01	ci right 4.116871e-01	k: 4020	n:10000
TOP2A   10000 perm   3 sec   (3973 perm/sec)   p_kst 4.020000e-01   p_cons 6.435000e-01   p_joint 5.888000e-01

Outputting figure to mutsig2_images.part000000000180/TOP2A.5_4736_10000_0.402_0.6435_0.5888.png
                gene_name: TOP2A
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 48 percent done.
TOR1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.740754e-02	ci left: 1.961390e-01	ci right 2.120337e-01	k: 2040	n:10000
Cons ci ratio: 9.327507e-02	ci left: 1.430542e-01	ci right 1.571503e-01	k: 1500	n:10000
KS ci ratio: 4.414416e-02	ci left: 4.310375e-01	ci right 4.505970e-01	k: 4408	n:10000
TOR1A   10000 perm   2 sec   (5670 perm/sec)   p_kst 4.408000e-01   p_cons 1.500000e-01   p_joint 2.040000e-01

Outputting figure to mutsig2_images.part000000000180/TOR1A.5_1019_10000_0.4408_0.15_0.204.png
                gene_name: TOR1A
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 50 percent done.
TPCN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.310533e-02	ci left: 3.432297e-01	ci right 3.620562e-01	k: 3526	n:10000
Cons ci ratio: 2.007721e-02	ci left: 7.841132e-01	ci right 8.001162e-01	k: 7922	n:10000
KS ci ratio: 7.092251e-02	ci left: 2.256317e-01	ci right 2.423235e-01	k: 2339	n:10000
TPCN2   10000 perm   2 sec   (4643 perm/sec)   p_kst 2.339000e-01   p_cons 7.922000e-01   p_joint 3.526000e-01

Outputting figure to mutsig2_images.part000000000180/TPCN2.5_2359_10000_0.2339_0.7922_0.3526.png
                gene_name: TPCN2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 52 percent done.
TOMM70A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.639624e-02	ci left: 6.788155e-01	ci right 6.970749e-01	k: 6880	n:10000
Cons ci ratio: 1.162697e-02	ci left: 9.136856e-01	ci right 9.244688e-01	k: 9192	n:10000
KS ci ratio: 4.087600e-02	ci left: 4.691661e-01	ci right 4.888461e-01	k: 4790	n:10000
TOMM70A   10000 perm   2 sec   (5048 perm/sec)   p_kst 4.790000e-01   p_cons 9.192000e-01   p_joint 6.880000e-01

Outputting figure to mutsig2_images.part000000000180/TOMM70A.4_1875_10000_0.479_0.9192_0.688.png
                gene_name: TOMM70A
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 54 percent done.
TOP1MT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.856686e-02	ci left: 6.436774e-01	ci right 6.624334e-01	k: 6531	n:10000
Cons ci ratio: 1.060242e-02	ci left: 9.267855e-01	ci right 9.367612e-01	k: 9319	n:10000
KS ci ratio: 4.928435e-02	ci left: 3.778359e-01	ci right 3.970298e-01	k: 3874	n:10000
TOP1MT   10000 perm   2 sec   (5297 perm/sec)   p_kst 3.874000e-01   p_cons 9.319000e-01   p_joint 6.531000e-01

Outputting figure to mutsig2_images.part000000000180/TOP1MT.4_1862_10000_0.3874_0.9319_0.6531.png
                gene_name: TOP1MT
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 56 percent done.
TPM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.339773e-01	ci left: 2.410011e-02	ci right 3.057918e-02	k: 272	n:10000
Cons ci ratio: 4.509198e-01	ci left: 5.814929e-03	ci right 9.281233e-03	k: 74	n:10000
KS ci ratio: 6.136535e-02	ci left: 2.808214e-01	ci right 2.987012e-01	k: 2897	n:10000
TPM4   10000 perm   2 sec   (5970 perm/sec)   p_kst 2.897000e-01   p_cons 7.400000e-03   p_joint 2.720000e-02

Joint ci ratio: 1.354374e-01	ci left: 3.747135e-02	ci right 4.296335e-02	k: 803	n:20000
Cons ci ratio: 3.116120e-01	ci left: 6.627764e-03	ci right 9.118513e-03	k: 156	n:20000
KS ci ratio: 4.303117e-02	ci left: 2.868964e-01	ci right 2.995638e-01	k: 5864	n:20000
TPM4   20000 perm   4 sec   (5406 perm/sec)   p_kst 2.932000e-01   p_cons 7.800000e-03   p_joint 4.015000e-02

Joint ci ratio: 1.833964e-01	ci left: 1.362316e-02	ci right 1.640526e-02	k: 449	n:30000
Cons ci ratio: 2.580461e-01	ci left: 6.648515e-03	ci right 8.648608e-03	k: 228	n:30000
KS ci ratio: 3.638525e-02	ci left: 2.738634e-01	ci right 2.840461e-01	k: 8368	n:30000
TPM4   30000 perm   6 sec   (5102 perm/sec)   p_kst 2.789333e-01   p_cons 7.600000e-03   p_joint 1.496667e-02

Joint ci ratio: 1.223378e-01	ci left: 2.349206e-02	ci right 2.657742e-02	k: 1000	n:40000
Cons ci ratio: 2.239687e-01	ci left: 6.748716e-03	ci right 8.473923e-03	k: 303	n:40000
KS ci ratio: 3.171283e-02	ci left: 2.719963e-01	ci right 2.807861e-01	k: 11055	n:40000
TPM4   40000 perm   9 sec   (4645 perm/sec)   p_kst 2.763750e-01   p_cons 7.575000e-03   p_joint 2.500000e-02

Joint ci ratio: 9.604689e-02	ci left: 3.068941e-02	ci right 3.380521e-02	k: 1611	n:50000
Cons ci ratio: 2.000591e-01	ci left: 6.857472e-03	ci right 8.400519e-03	k: 380	n:50000
KS ci ratio: 2.837193e-02	ci left: 2.723636e-01	ci right 2.802223e-01	k: 13814	n:50000
TPM4   50000 perm   11 sec   (4400 perm/sec)   p_kst 2.762800e-01   p_cons 7.600000e-03   p_joint 3.222000e-02

Joint ci ratio: 7.952796e-02	ci left: 3.736686e-02	ci right 4.047794e-02	k: 2334	n:60000
Cons ci ratio: 1.820675e-01	ci left: 6.968399e-03	ci right 8.379848e-03	k: 459	n:60000
KS ci ratio: 2.590100e-02	ci left: 2.726913e-01	ci right 2.798636e-01	k: 16576	n:60000
TPM4   60000 perm   14 sec   (4341 perm/sec)   p_kst 2.762667e-01   p_cons 7.650000e-03   p_joint 3.890000e-02

Joint ci ratio: 8.277622e-02	ci left: 2.975639e-02	ci right 3.233982e-02	k: 2172	n:70000
Cons ci ratio: 1.667962e-01	ci left: 7.175320e-03	ci right 8.494539e-03	k: 547	n:70000
KS ci ratio: 2.397011e-02	ci left: 2.731177e-01	ci right 2.797580e-01	k: 19350	n:70000
TPM4   70000 perm   16 sec   (4299 perm/sec)   p_kst 2.764286e-01   p_cons 7.814286e-03   p_joint 3.102857e-02

Joint ci ratio: 8.802909e-02	ci left: 2.312171e-02	ci right 2.526298e-02	k: 1934	n:80000
Cons ci ratio: 1.564378e-01	ci left: 7.178016e-03	ci right 8.408082e-03	k: 622	n:80000
KS ci ratio: 2.239570e-02	ci left: 2.738012e-01	ci right 2.800150e-01	k: 22152	n:80000
TPM4   80000 perm   19 sec   (4257 perm/sec)   p_kst 2.769000e-01   p_cons 7.775000e-03   p_joint 2.417500e-02

Joint ci ratio: 9.123371e-02	ci left: 1.918219e-02	ci right 2.102670e-02	k: 1808	n:90000
Cons ci ratio: 1.469506e-01	ci left: 7.267725e-03	ci right 8.430999e-03	k: 705	n:90000
KS ci ratio: 2.111436e-02	ci left: 2.739894e-01	ci right 2.798473e-01	k: 24922	n:90000
TPM4   90000 perm   21 sec   (4209 perm/sec)   p_kst 2.769111e-01   p_cons 7.833333e-03   p_joint 2.008889e-02

Joint ci ratio: 8.794633e-02	ci left: 1.862259e-02	ci right 2.034544e-02	k: 1947	n:100000
Cons ci ratio: 1.396291e-01	ci left: 7.273718e-03	ci right 8.375117e-03	k: 781	n:100000
KS ci ratio: 1.999450e-02	ci left: 2.748658e-01	ci right 2.804271e-01	k: 27764	n:100000
TPM4   100000 perm   24 sec   (4132 perm/sec)   p_kst 2.776400e-01   p_cons 7.810000e-03   p_joint 1.947000e-02

Joint ci ratio: 7.847265e-02	ci left: 2.131065e-02	ci right 2.306012e-02	k: 2439	n:110000
Cons ci ratio: 1.329910e-01	ci left: 7.314961e-03	ci right 8.365783e-03	k: 861	n:110000
KS ci ratio: 1.904739e-02	ci left: 2.753447e-01	ci right 2.806488e-01	k: 30579	n:110000
TPM4   110000 perm   27 sec   (4071 perm/sec)   p_kst 2.779909e-01   p_cons 7.827273e-03   p_joint 2.217273e-02

Joint ci ratio: 8.570774e-02	ci left: 1.639848e-02	ci right 1.787499e-02	k: 2055	n:120000
Cons ci ratio: 1.272177e-01	ci left: 7.350363e-03	ci right 8.356973e-03	k: 941	n:120000
KS ci ratio: 1.822438e-02	ci left: 2.757240e-01	ci right 2.808034e-01	k: 33391	n:120000
TPM4   120000 perm   30 sec   (4018 perm/sec)   p_kst 2.782583e-01   p_cons 7.841667e-03   p_joint 1.712500e-02

Joint ci ratio: 7.499372e-02	ci left: 1.981208e-02	ci right 2.136326e-02	k: 2675	n:130000
Cons ci ratio: 1.216574e-01	ci left: 7.440829e-03	ci right 8.412083e-03	k: 1029	n:130000
KS ci ratio: 1.751166e-02	ci left: 2.757729e-01	ci right 2.806524e-01	k: 36167	n:130000
TPM4   130000 perm   33 sec   (3964 perm/sec)   p_kst 2.782077e-01   p_cons 7.915385e-03   p_joint 2.057692e-02

Joint ci ratio: 7.412346e-02	ci left: 1.885922e-02	ci right 2.031791e-02	k: 2741	n:140000
Cons ci ratio: 1.174580e-01	ci left: 7.429033e-03	ci right 8.362950e-03	k: 1104	n:140000
KS ci ratio: 1.684893e-02	ci left: 2.764735e-01	ci right 2.811785e-01	k: 39035	n:140000
TPM4   140000 perm   36 sec   (3908 perm/sec)   p_kst 2.788214e-01   p_cons 7.885714e-03   p_joint 1.957857e-02

Joint ci ratio: 7.065752e-02	ci left: 1.939574e-02	ci right 2.082290e-02	k: 3015	n:150000
Cons ci ratio: 1.128490e-01	ci left: 7.529457e-03	ci right 8.436383e-03	k: 1196	n:150000
KS ci ratio: 1.626286e-02	ci left: 2.769174e-01	ci right 2.814644e-01	k: 41878	n:150000
TPM4   150000 perm   39 sec   (3854 perm/sec)   p_kst 2.791867e-01   p_cons 7.973333e-03   p_joint 2.010000e-02

Joint ci ratio: 6.934424e-02	ci left: 1.890178e-02	ci right 2.026570e-02	k: 3132	n:160000
Cons ci ratio: 1.092570e-01	ci left: 7.544981e-03	ci right 8.422988e-03	k: 1276	n:160000
KS ci ratio: 1.574912e-02	ci left: 2.769217e-01	ci right 2.813238e-01	k: 44659	n:160000
TPM4   160000 perm   42 sec   (3802 perm/sec)   p_kst 2.791188e-01   p_cons 7.975000e-03   p_joint 1.957500e-02

Joint ci ratio: 6.262350e-02	ci left: 2.182341e-02	ci right 2.324000e-02	k: 3829	n:170000
Cons ci ratio: 1.057521e-01	ci left: 7.593450e-03	ci right 8.446986e-03	k: 1362	n:170000
KS ci ratio: 1.528543e-02	ci left: 2.768160e-01	ci right 2.810857e-01	k: 47421	n:170000
TPM4   170000 perm   45 sec   (3749 perm/sec)   p_kst 2.789471e-01   p_cons 8.011765e-03   p_joint 2.252353e-02

Joint ci ratio: 6.194847e-02	ci left: 2.108655e-02	ci right 2.244003e-02	k: 3916	n:180000
Cons ci ratio: 1.028868e-01	ci left: 7.588207e-03	ci right 8.416645e-03	k: 1439	n:180000
KS ci ratio: 1.485139e-02	ci left: 2.769676e-01	ci right 2.811173e-01	k: 50227	n:180000
TPM4   180000 perm   49 sec   (3696 perm/sec)   p_kst 2.790389e-01   p_cons 7.994444e-03   p_joint 2.175556e-02

Joint ci ratio: 6.264937e-02	ci left: 1.955657e-02	ci right 2.082655e-02	k: 3835	n:190000
Cons ci ratio: 9.994397e-02	ci left: 7.629987e-03	ci right 8.437763e-03	k: 1525	n:190000
KS ci ratio: 1.444762e-02	ci left: 2.772361e-01	ci right 2.812759e-01	k: 53058	n:190000
TPM4   190000 perm   52 sec   (3641 perm/sec)   p_kst 2.792526e-01   p_cons 8.026316e-03   p_joint 2.018421e-02

Outputting figure to mutsig2_images.part000000000180/TPM4.4_1027_190000_0.27925_0.0080263_0.020184.png
                gene_name: TPM4
               theta_stop: 0.100 
                    nperm: 190000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.0080 
      ci_cons_bounds_left: 0.0076 
     ci_cons_bounds_right: 0.0084 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 58 percent done.
TPRX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.278862e-02	ci left: 7.387626e-01	ci right 7.558931e-01	k: 7474	n:10000
Cons ci ratio: 4.715155e-02	ci left: 3.989431e-01	ci right 4.183102e-01	k: 4086	n:10000
KS ci ratio: 3.082280e-02	ci left: 6.082933e-01	ci right 6.274380e-01	k: 6179	n:10000
TPRX1   10000 perm   2 sec   (5542 perm/sec)   p_kst 6.179000e-01   p_cons 4.086000e-01   p_joint 7.474000e-01

Outputting figure to mutsig2_images.part000000000180/TPRX1.4_1244_10000_0.6179_0.4086_0.7474.png
                gene_name: TPRX1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 60 percent done.
TOMM34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.135109e-02	ci left: 9.172915e-01	ci right 9.278607e-01	k: 9227	n:10000
KS ci ratio: 2.073389e-02	ci left: 7.731682e-01	ci right 7.894676e-01	k: 7814	n:10000
TOMM34   10000 perm   2 sec   (6210 perm/sec)   p_kst 7.814000e-01   p_cons 9.227000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000180/TOMM34.3_958_10000_0.7814_0.9227_1.png
                gene_name: TOMM34
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
TOP3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.949951e-02	ci left: 6.288939e-01	ci right 6.478255e-01	k: 6384	n:10000
Cons ci ratio: 4.961818e-02	ci left: 3.746515e-01	ci right 3.938160e-01	k: 3842	n:10000
KS ci ratio: 3.987402e-02	ci left: 4.815553e-01	ci right 5.012497e-01	k: 4914	n:10000
TOP3B   10000 perm   2 sec   (5178 perm/sec)   p_kst 4.914000e-01   p_cons 3.842000e-01   p_joint 6.384000e-01

Outputting figure to mutsig2_images.part000000000180/TOP3B.3_2657_10000_0.4914_0.3842_0.6384.png
                gene_name: TOP3B
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 64 percent done.
TOR3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.398202e-02	ci left: 2.110256e-01	ci right 2.273383e-01	k: 2191	n:10000
Cons ci ratio: 1.028186e-01	ci left: 1.203376e-01	ci right 1.334806e-01	k: 1268	n:10000
KS ci ratio: 4.309433e-02	ci left: 4.429091e-01	ci right 4.625185e-01	k: 4527	n:10000
TOR3A   10000 perm   2 sec   (5995 perm/sec)   p_kst 4.527000e-01   p_cons 1.268000e-01   p_joint 2.191000e-01

Joint ci ratio: 5.541051e-02	ci left: 1.945742e-01	ci right 2.057131e-01	k: 4002	n:20000
Cons ci ratio: 7.365539e-02	ci left: 1.194622e-01	ci right 1.286474e-01	k: 2480	n:20000
KS ci ratio: 3.064454e-02	ci left: 4.430380e-01	ci right 4.568766e-01	k: 8999	n:20000
TOR3A   20000 perm   4 sec   (5229 perm/sec)   p_kst 4.499500e-01   p_cons 1.240000e-01   p_joint 2.001000e-01

Outputting figure to mutsig2_images.part000000000180/TOR3A.3_1218_20000_0.44995_0.124_0.2001.png
                gene_name: TOR3A
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 66 percent done.
TP53TG5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.665763e-02	ci left: 4.040236e-01	ci right 4.234267e-01	k: 4137	n:10000
Cons ci ratio: 4.650411e-02	ci left: 4.056177e-01	ci right 4.250317e-01	k: 4153	n:10000
KS ci ratio: 6.570466e-02	ci left: 2.537975e-01	ci right 2.711410e-01	k: 2624	n:10000
TP53TG5   10000 perm   2 sec   (6228 perm/sec)   p_kst 2.624000e-01   p_cons 4.153000e-01   p_joint 4.137000e-01

Outputting figure to mutsig2_images.part000000000180/TP53TG5.3_893_10000_0.2624_0.4153_0.4137.png
                gene_name: TP53TG5
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 68 percent done.
TPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.043253e-02	ci left: 6.143208e-01	ci right 6.334069e-01	k: 6239	n:10000
KS ci ratio: 3.213000e-02	ci left: 5.884132e-01	ci right 6.077296e-01	k: 5981	n:10000
TPH1   10000 perm   2 sec   (5897 perm/sec)   p_kst 5.981000e-01   p_cons 6.239000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000180/TPH1.3_1375_10000_0.5981_0.6239_1.png
                gene_name: TPH1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
TPK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.699584e-02	ci left: 4.005369e-01	ci right 4.199155e-01	k: 4102	n:10000
Cons ci ratio: 6.175519e-02	ci left: 2.782460e-01	ci right 2.960782e-01	k: 2871	n:10000
KS ci ratio: 4.614221e-02	ci left: 4.094040e-01	ci right 4.288431e-01	k: 4191	n:10000
TPK1   10000 perm   2 sec   (6127 perm/sec)   p_kst 4.191000e-01   p_cons 2.871000e-01   p_joint 4.102000e-01

Outputting figure to mutsig2_images.part000000000180/TPK1.3_764_10000_0.4191_0.2871_0.4102.png
                gene_name: TPK1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 72 percent done.
TPM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.671637e-02	ci left: 6.735763e-01	ci right 6.919171e-01	k: 6828	n:10000
Cons ci ratio: 5.307046e-02	ci left: 3.435278e-01	ci right 3.623579e-01	k: 3529	n:10000
KS ci ratio: 1.149354e-02	ci left: 9.154367e-01	ci right 9.261167e-01	k: 9209	n:10000
TPM3   10000 perm   2 sec   (5750 perm/sec)   p_kst 9.209000e-01   p_cons 3.529000e-01   p_joint 6.828000e-01

Outputting figure to mutsig2_images.part000000000180/TPM3.3_1285_10000_0.9209_0.3529_0.6828.png
                gene_name: TPM3
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 74 percent done.
TNPO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.536123e-03	ci left: 9.395202e-01	ci right 9.486189e-01	k: 9442	n:10000
Cons ci ratio: 1.510206e-02	ci left: 8.640678e-01	ci right 8.773155e-01	k: 8708	n:10000
KS ci ratio: 5.827831e-02	ci left: 3.023301e-01	ci right 3.205799e-01	k: 3114	n:10000
TNPO3   10000 perm   2 sec   (5391 perm/sec)   p_kst 3.114000e-01   p_cons 8.708000e-01   p_joint 9.442000e-01

Outputting figure to mutsig2_images.part000000000180/TNPO3.2_2860_10000_0.3114_0.8708_0.9442.png
                gene_name: TNPO3
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 76 percent done.
TNRC18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.810217e-02	ci left: 3.036194e-01	ci right 3.218898e-01	k: 3127	n:10000
Cons ci ratio: 5.816980e-02	ci left: 3.031235e-01	ci right 3.213860e-01	k: 3122	n:10000
KS ci ratio: 4.936750e-02	ci left: 3.770397e-01	ci right 3.962264e-01	k: 3866	n:10000
TNRC18   10000 perm   3 sec   (3024 perm/sec)   p_kst 3.866000e-01   p_cons 3.122000e-01   p_joint 3.127000e-01

Outputting figure to mutsig2_images.part000000000180/TNRC18.2_9023_10000_0.3866_0.3122_0.3127.png
                gene_name: TNRC18
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 78 percent done.
TOB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.663749e-03	ci left: 9.685759e-01	ci right 9.751453e-01	k: 9720	n:10000
Cons ci ratio: 2.589334e-02	ci left: 6.870800e-01	ci right 7.052056e-01	k: 6962	n:10000
KS ci ratio: 1.522923e-02	ci left: 8.621274e-01	ci right 8.754569e-01	k: 8689	n:10000
TOB1   10000 perm   2 sec   (6330 perm/sec)   p_kst 8.689000e-01   p_cons 6.962000e-01   p_joint 9.720000e-01

Outputting figure to mutsig2_images.part000000000180/TOB1.2_1042_10000_0.8689_0.6962_0.972.png
                gene_name: TOB1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 80 percent done.
TOPBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.749872e-02	ci left: 5.122545e-01	ci right 5.319326e-01	k: 5221	n:10000
Cons ci ratio: 3.014793e-02	ci left: 6.187420e-01	ci right 6.377832e-01	k: 6283	n:10000
KS ci ratio: 5.918727e-02	ci left: 2.957857e-01	ci right 3.139281e-01	k: 3048	n:10000
TOPBP1   10000 perm   2 sec   (4368 perm/sec)   p_kst 3.048000e-01   p_cons 6.283000e-01   p_joint 5.221000e-01

Outputting figure to mutsig2_images.part000000000180/TOPBP1.2_4677_10000_0.3048_0.6283_0.5221.png
                gene_name: TOPBP1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 82 percent done.
TOR1AIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.094410e-01	ci left: 1.074437e-01	ci right 1.199823e-01	k: 1136	n:10000
Cons ci ratio: 8.588454e-02	ci left: 1.649446e-01	ci right 1.798468e-01	k: 1723	n:10000
KS ci ratio: 3.872667e-02	ci left: 4.961503e-01	ci right 5.158462e-01	k: 5060	n:10000
TOR1AIP1   10000 perm   2 sec   (5803 perm/sec)   p_kst 5.060000e-01   p_cons 1.723000e-01   p_joint 1.136000e-01

Joint ci ratio: 6.609905e-02	ci left: 1.445843e-01	ci right 1.545178e-01	k: 2990	n:20000
Cons ci ratio: 6.059246e-02	ci left: 1.677807e-01	ci right 1.783146e-01	k: 3460	n:20000
KS ci ratio: 2.761692e-02	ci left: 4.948457e-01	ci right 5.087538e-01	k: 10036	n:20000
TOR1AIP1   20000 perm   4 sec   (5071 perm/sec)   p_kst 5.018000e-01   p_cons 1.730000e-01   p_joint 1.495000e-01

Outputting figure to mutsig2_images.part000000000180/TOR1AIP1.2_1792_20000_0.5018_0.173_0.1495.png
                gene_name: TOR1AIP1
               theta_stop: 0.066 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 84 percent done.
TOX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.392727e-01	ci left: 6.826660e-02	ci right 7.858355e-02	k: 733	n:10000
Cons ci ratio: 3.083799e-01	ci left: 1.344771e-02	ci right 1.844006e-02	k: 158	n:10000
KS ci ratio: 7.961909e-02	ci left: 1.872743e-01	ci right 2.029038e-01	k: 1950	n:10000
TOX2   10000 perm   2 sec   (6060 perm/sec)   p_kst 1.950000e-01   p_cons 1.580000e-02   p_joint 7.330000e-02

Joint ci ratio: 6.717203e-02	ci left: 1.405907e-01	ci right 1.504126e-01	k: 2909	n:20000
Cons ci ratio: 2.269270e-01	ci left: 1.303072e-02	ci right 1.641252e-02	k: 293	n:20000
KS ci ratio: 5.575025e-02	ci left: 1.926449e-01	ci right 2.037430e-01	k: 3963	n:20000
TOX2   20000 perm   4 sec   (5356 perm/sec)   p_kst 1.981500e-01   p_cons 1.465000e-02   p_joint 1.454500e-01

Joint ci ratio: 2.992683e-02	ci left: 3.583528e-01	ci right 3.692736e-01	k: 10914	n:30000
Cons ci ratio: 1.831899e-01	ci left: 1.365498e-02	ci right 1.644009e-02	k: 450	n:30000
KS ci ratio: 4.524503e-02	ci left: 1.955853e-01	ci right 2.046728e-01	k: 6003	n:30000
TOX2   30000 perm   6 sec   (5044 perm/sec)   p_kst 2.001000e-01   p_cons 1.500000e-02   p_joint 3.638000e-01

Joint ci ratio: 2.827075e-02	ci left: 3.200118e-01	ci right 3.292136e-01	k: 12984	n:40000
Cons ci ratio: 1.577622e-01	ci left: 1.399978e-02	ci right 1.642135e-02	k: 607	n:40000
KS ci ratio: 3.907464e-02	ci left: 1.970821e-01	ci right 2.049614e-01	k: 8040	n:40000
TOX2   40000 perm   8 sec   (4800 perm/sec)   p_kst 2.010000e-01   p_cons 1.517500e-02   p_joint 3.246000e-01

Joint ci ratio: 2.538594e-02	ci left: 3.187820e-01	ci right 3.269986e-01	k: 16144	n:50000
Cons ci ratio: 1.418673e-01	ci left: 1.397209e-02	ci right 1.612475e-02	k: 751	n:50000
KS ci ratio: 3.491523e-02	ci left: 1.978127e-01	ci right 2.048620e-01	k: 10066	n:50000
TOX2   50000 perm   11 sec   (4586 perm/sec)   p_kst 2.013200e-01   p_cons 1.502000e-02   p_joint 3.228800e-01

Joint ci ratio: 2.038822e-02	ci left: 3.773279e-01	ci right 3.851169e-01	k: 22873	n:60000
Cons ci ratio: 1.283137e-01	ci left: 1.433303e-02	ci right 1.631425e-02	k: 918	n:60000
KS ci ratio: 3.202154e-02	ci left: 1.966400e-01	ci right 2.030558e-01	k: 11990	n:60000
TOX2   60000 perm   13 sec   (4485 perm/sec)   p_kst 1.998333e-01   p_cons 1.530000e-02   p_joint 3.812167e-01

Joint ci ratio: 1.888287e-02	ci left: 3.774431e-01	ci right 3.846525e-01	k: 26673	n:70000
Cons ci ratio: 1.192008e-01	ci left: 1.430665e-02	ci right 1.613386e-02	k: 1064	n:70000
KS ci ratio: 2.963628e-02	ci left: 1.969853e-01	ci right 2.029253e-01	k: 13996	n:70000
TOX2   70000 perm   16 sec   (4426 perm/sec)   p_kst 1.999429e-01   p_cons 1.520000e-02   p_joint 3.810429e-01

Joint ci ratio: 1.742353e-02	ci left: 3.841344e-01	ci right 3.908987e-01	k: 31001	n:80000
Cons ci ratio: 1.109547e-01	ci left: 1.450944e-02	ci right 1.622597e-02	k: 1228	n:80000
KS ci ratio: 2.776080e-02	ci left: 1.967355e-01	ci right 2.022863e-01	k: 15960	n:80000
TOX2   80000 perm   18 sec   (4358 perm/sec)   p_kst 1.995000e-01   p_cons 1.535000e-02   p_joint 3.875125e-01

Joint ci ratio: 1.548478e-02	ci left: 4.126771e-01	ci right 4.191283e-01	k: 37431	n:90000
Cons ci ratio: 1.049809e-01	ci left: 1.445407e-02	ci right 1.606628e-02	k: 1372	n:90000
KS ci ratio: 2.612419e-02	ci left: 1.974904e-01	ci right 2.027290e-01	k: 18009	n:90000
TOX2   90000 perm   21 sec   (4290 perm/sec)   p_kst 2.001000e-01   p_cons 1.524444e-02   p_joint 4.159000e-01

Joint ci ratio: 1.509235e-02	ci left: 3.997980e-01	ci right 4.058877e-01	k: 40284	n:100000
Cons ci ratio: 9.951274e-02	ci left: 1.451906e-02	ci right 1.604924e-02	k: 1527	n:100000
KS ci ratio: 2.477439e-02	ci left: 1.977435e-01	ci right 2.027139e-01	k: 20022	n:100000
TOX2   100000 perm   24 sec   (4225 perm/sec)   p_kst 2.002200e-01   p_cons 1.527000e-02   p_joint 4.028400e-01

Outputting figure to mutsig2_images.part000000000180/TOX2.2_1687_100000_0.20022_0.01527_0.40284.png
                gene_name: TOX2
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 86 percent done.
TP53I3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.347720e-02	ci left: 5.684492e-01	ci right 5.879053e-01	k: 5782	n:10000
Cons ci ratio: 3.233755e-02	ci left: 5.853022e-01	ci right 6.046425e-01	k: 5950	n:10000
KS ci ratio: 3.808897e-02	ci left: 5.044512e-01	ci right 5.241404e-01	k: 5143	n:10000
TP53I3   10000 perm   2 sec   (6412 perm/sec)   p_kst 5.143000e-01   p_cons 5.950000e-01   p_joint 5.782000e-01

Outputting figure to mutsig2_images.part000000000180/TP53I3.2_1019_10000_0.5143_0.595_0.5782.png
                gene_name: TP53I3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 88 percent done.
TP53INP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.265852e-02	ci left: 1.447212e-01	ci right 1.588823e-01	k: 1517	n:10000
Cons ci ratio: 4.435067e-02	ci left: 4.287437e-01	ci right 4.482921e-01	k: 4385	n:10000
KS ci ratio: 1.759195e-01	ci left: 4.312598e-02	ci right 5.154025e-02	k: 472	n:10000
TP53INP1   10000 perm   1 sec   (6762 perm/sec)   p_kst 4.720000e-02   p_cons 4.385000e-01   p_joint 1.517000e-01

Joint ci ratio: 7.806738e-02	ci left: 1.075627e-01	ci right 1.163505e-01	k: 2238	n:20000
Cons ci ratio: 3.087774e-02	ci left: 4.392940e-01	ci right 4.531217e-01	k: 8924	n:20000
KS ci ratio: 1.226379e-01	ci left: 4.561215e-02	ci right 5.161995e-02	k: 971	n:20000
TP53INP1   20000 perm   4 sec   (5702 perm/sec)   p_kst 4.855000e-02   p_cons 4.462000e-01   p_joint 1.119000e-01

Joint ci ratio: 7.470326e-02	ci left: 8.091761e-02	ci right 8.722988e-02	k: 2521	n:30000
Cons ci ratio: 2.518680e-02	ci left: 4.410630e-01	ci right 4.523473e-01	k: 13401	n:30000
KS ci ratio: 1.008266e-01	ci left: 4.554319e-02	ci right 5.041150e-02	k: 1438	n:30000
TP53INP1   30000 perm   6 sec   (5433 perm/sec)   p_kst 4.793333e-02   p_cons 4.467000e-01   p_joint 8.403333e-02

Joint ci ratio: 5.431858e-02	ci left: 1.120621e-01	ci right 1.183439e-01	k: 4607	n:40000
Cons ci ratio: 2.179287e-02	ci left: 4.422690e-01	ci right 4.520387e-01	k: 17886	n:40000
KS ci ratio: 8.745448e-02	ci left: 4.572967e-02	ci right 4.993629e-02	k: 1912	n:40000
TP53INP1   40000 perm   8 sec   (5169 perm/sec)   p_kst 4.780000e-02   p_cons 4.471500e-01   p_joint 1.151750e-01

Outputting figure to mutsig2_images.part000000000180/TP53INP1.2_761_40000_0.0478_0.44715_0.11517.png
                gene_name: TP53INP1
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 90 percent done.
TPCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.489128e-01	ci left: 5.995589e-02	ci right 6.969950e-02	k: 647	n:10000
Cons ci ratio: 1.439852e-01	ci left: 6.401182e-02	ci right 7.404101e-02	k: 689	n:10000
KS ci ratio: 1.348616e-01	ci left: 7.262363e-02	ci right 8.322381e-02	k: 778	n:10000
TPCN1   10000 perm   2 sec   (5263 perm/sec)   p_kst 7.780000e-02   p_cons 6.890000e-02   p_joint 6.470000e-02

Joint ci ratio: 9.748302e-02	ci left: 7.114225e-02	ci right 7.848193e-02	k: 1495	n:20000
Cons ci ratio: 9.906657e-02	ci left: 6.899234e-02	ci right 7.623250e-02	k: 1451	n:20000
KS ci ratio: 9.447857e-02	ci left: 7.549372e-02	ci right 8.302914e-02	k: 1584	n:20000
TPCN1   20000 perm   4 sec   (4616 perm/sec)   p_kst 7.920000e-02   p_cons 7.255000e-02   p_joint 7.475000e-02

Outputting figure to mutsig2_images.part000000000180/TPCN1.2_2779_20000_0.0792_0.07255_0.07475.png
                gene_name: TPCN1
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.083 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.078 

Current progress: 92 percent done.
TPD52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.278897e-02	ci left: 5.785796e-01	ci right 5.979689e-01	k: 5883	n:10000
Cons ci ratio: 2.257142e-02	ci left: 7.424021e-01	ci right 7.594515e-01	k: 7510	n:10000
KS ci ratio: 5.727471e-02	ci left: 3.097694e-01	ci right 3.281362e-01	k: 3189	n:10000
TPD52   10000 perm   2 sec   (6465 perm/sec)   p_kst 3.189000e-01   p_cons 7.510000e-01   p_joint 5.883000e-01

Outputting figure to mutsig2_images.part000000000180/TPD52.2_799_10000_0.3189_0.751_0.5883.png
                gene_name: TPD52
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 94 percent done.
TPD52L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.059430e-02	ci left: 7.754984e-01	ci right 7.917361e-01	k: 7837	n:10000
Cons ci ratio: 6.239472e-02	ci left: 2.740864e-01	ci right 2.918402e-01	k: 2829	n:10000
KS ci ratio: 5.137174e-02	ci left: 3.584380e-01	ci right 3.774390e-01	k: 3679	n:10000
TPD52L1   10000 perm   1 sec   (6972 perm/sec)   p_kst 3.679000e-01   p_cons 2.829000e-01   p_joint 7.837000e-01

Outputting figure to mutsig2_images.part000000000180/TPD52L1.2_643_10000_0.3679_0.2829_0.7837.png
                gene_name: TPD52L1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 96 percent done.
TPM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.395232e-03	ci left: 9.786643e-01	ci right 9.840501e-01	k: 9815	n:10000
Cons ci ratio: 1.377056e-02	ci left: 8.839084e-01	ci right 8.962634e-01	k: 8902	n:10000
KS ci ratio: 3.139339e-02	ci left: 5.995561e-01	ci right 6.187803e-01	k: 6092	n:10000
TPM1   10000 perm   2 sec   (6481 perm/sec)   p_kst 6.092000e-01   p_cons 8.902000e-01   p_joint 9.815000e-01

Outputting figure to mutsig2_images.part000000000180/TPM1.2_1410_10000_0.6092_0.8902_0.9815.png
                gene_name: TPM1
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 98 percent done.
TPMT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.402930e-02	ci left: 5.604280e-01	ci right 5.799311e-01	k: 5702	n:10000
Cons ci ratio: 1.607365e-02	ci left: 8.490671e-01	ci right 8.629248e-01	k: 8561	n:10000
KS ci ratio: 6.142503e-02	ci left: 2.804252e-01	ci right 2.982977e-01	k: 2893	n:10000
TPMT   10000 perm   2 sec   (6645 perm/sec)   p_kst 2.893000e-01   p_cons 8.561000e-01   p_joint 5.702000e-01

Outputting figure to mutsig2_images.part000000000180/TPMT.2_770_10000_0.2893_0.8561_0.5702.png
                gene_name: TPMT
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000180
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 180 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1648>
Subject: Job 9894188: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1648>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000181> was used as the working directory.
Started at Sat Oct  6 00:33:19 2012
Results reported at Sat Oct  6 05:15:37 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000181.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000181.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 181  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000181.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  17154.62 sec.
    Max Memory :      6255 MB
    Max Swap   :      8875 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
181
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 181
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 181: processing genes 16228 - 16317
Calculating significance of each gene.
Using projection method.
16228	TPST1	1
16229	TPST2	8.077177e-01
16230	TPT1	1
16231	TPTE	1.192951e-04
16232	TPTE2	1.417337e-02
16233	TPX2	1.364781e-01
16234	TRA2A	1
16235	TRA2B	1.823186e-02
In gene TRABD the following bins exceed PROBCAP:
    COAD-AA-3530	categ 6	N = 1047    n = 1	mu =   1.97e-07
16236	TRABD	6.162705e-01
16237	TRADD	5.298709e-01
16238	TRAF1	7.618487e-01
16239	TRAF2	9.451802e-01
16240	TRAF3	5.860059e-02
16241	TRAF3IP1	6.218262e-01
16242	TRAF3IP2	5.017156e-01
16243	TRAF3IP3	6.884288e-02
16244	TRAF4	6.335509e-01
16245	TRAF5	9.421895e-02
16246	TRAF6	2.867639e-01
16247	TRAF7	6.368880e-01
16248	TRAFD1	3.768093e-01
16249	TRAIP	6.562217e-01
16250	TRAK1	3.727053e-01
16251	TRAK2	6.187348e-01
16252	TRAM1	4.423161e-01
16253	TRAM1L1	6.378260e-01
16254	TRAM2	8.711260e-01
16255	TRANK1	9.486097e-01
16256	TRAP1	9.831172e-01
16257	TRAPPC1	1
16258	TRAPPC10	2.372202e-01
16259	TRAPPC2	1
16260	TRAPPC2L	1
16261	TRAPPC3	6.328403e-01
16262	TRAPPC4	3.299559e-01
16263	TRAPPC5	1
16264	TRAPPC6A	1
16265	TRAPPC6B	4.781955e-01
16266	TRAPPC9	5.279605e-01
16267	TRAT1	9.397585e-02
16268	TRDMT1	2.329425e-01
16269	TRDN	2.761170e-02
16270	TREH	7.072374e-01
16271	TREM1	1.163862e-02
16272	TREM2	2.101378e-02
16273	TREML1	4.924230e-01
16274	TREML2	6.153977e-01
16275	TREML4	6.386706e-01
16276	TRERF1	1.308694e-01
16277	TREX1	4.369304e-01
16278	TREX2	3.903113e-01
16279	TRH	3.856216e-01
16280	TRHDE	4.805795e-02
16281	TRHR	1.850981e-02
16282	TRIAP1	1
16283	TRIB1	5.194684e-01
16284	TRIB2	1.665211e-01
16285	TRIB3	8.581977e-01
16286	TRIL	6.415977e-01
16287	TRIM10	5.357416e-01
16288	TRIM11	8.498729e-01
16289	TRIM13	2.132349e-01
16290	TRIM14	8.293218e-01
16291	TRIM15	7.883886e-01
16292	TRIM16	7.913481e-01
16293	TRIM16L	8.656553e-01
16294	TRIM17	4.519137e-01
16295	TRIM2	6.923224e-01
16296	TRIM21	8.943810e-01
16297	TRIM22	4.200982e-02
16298	TRIM23	3.809214e-01
16299	TRIM24	3.224483e-01
16300	TRIM25	9.485266e-01
16301	TRIM26	5.388507e-01
16302	TRIM27	1
16303	TRIM28	8.645493e-01
16304	TRIM29	9.048055e-01
16305	TRIM3	6.296934e-01
16306	TRIM31	5.559038e-01
16307	TRIM32	1.494980e-01
16308	TRIM33	5.652813e-02
16309	TRIM34	1
16310	TRIM35	7.504715e-01
16311	TRIM36	3.922692e-01
16312	TRIM37	1.313192e-01
16313	TRIM38	2.104054e-01
16314	TRIM39	3.783544e-01
16315	TRIM4	4.092251e-01
16316	TRIM40	9.296435e-02
16317	TRIM41	1.048227e-01
Done

Running MutSig 2:
Scatter job 181: processing genes 16228 - 16317
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TPTE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.791418e-02	ci left: 6.541423e-01	ci right 6.727624e-01	k: 6635	n:10000
Cons ci ratio: 2.148471e-02	ci left: 7.606116e-01	ci right 7.772314e-01	k: 7690	n:10000
KS ci ratio: 4.172899e-02	ci left: 4.588797e-01	ci right 4.785385e-01	k: 4687	n:10000
TPTE   10000 perm   2 sec   (4432 perm/sec)   p_kst 4.687000e-01   p_cons 7.690000e-01   p_joint 6.635000e-01

Outputting figure to mutsig2_images.part000000000181/TPTE.17_1740_10000_0.4687_0.769_0.6635.png
                gene_name: TPTE
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 2 percent done.
TRHDE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.103187e-01	ci left: 1.058826e-01	ci right 1.183444e-01	k: 1120	n:10000
Cons ci ratio: 5.718257e-02	ci left: 3.104639e-01	ci right 3.288413e-01	k: 3196	n:10000
KS ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
TRHDE   10000 perm   2 sec   (4591 perm/sec)   p_kst 7.860000e-02   p_cons 3.196000e-01   p_joint 1.120000e-01

Joint ci ratio: 7.448022e-02	ci left: 1.171008e-01	ci right 1.262095e-01	k: 2432	n:20000
Cons ci ratio: 3.924267e-02	ci left: 3.262691e-01	ci right 3.393795e-01	k: 6656	n:20000
KS ci ratio: 9.079590e-02	ci left: 8.136634e-02	ci right 8.915473e-02	k: 1704	n:20000
TRHDE   20000 perm   5 sec   (4163 perm/sec)   p_kst 8.520000e-02   p_cons 3.328000e-01   p_joint 1.216000e-01

Outputting figure to mutsig2_images.part000000000181/TRHDE.14_3151_20000_0.0852_0.3328_0.1216.png
                gene_name: TRHDE
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 3 percent done.
TRANK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.043162e-01	ci left: 3.186407e-02	ci right 3.920972e-02	k: 354	n:10000
Cons ci ratio: 7.227413e-02	ci left: 2.190177e-01	ci right 2.355415e-01	k: 2272	n:10000
KS ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
TRANK1   10000 perm   3 sec   (3473 perm/sec)   p_kst 3.010000e-02   p_cons 2.272000e-01   p_joint 3.540000e-02

Joint ci ratio: 1.210110e-01	ci left: 4.682585e-02	ci right 5.290587e-02	k: 996	n:20000
Cons ci ratio: 5.105519e-02	ci left: 2.218041e-01	ci right 2.334752e-01	k: 4552	n:20000
KS ci ratio: 1.513527e-01	ci left: 2.998929e-02	ci right 3.494786e-02	k: 648	n:20000
TRANK1   20000 perm   7 sec   (3020 perm/sec)   p_kst 3.240000e-02   p_cons 2.276000e-01   p_joint 4.980000e-02

Joint ci ratio: 9.008614e-02	ci left: 5.668609e-02	ci right 6.206630e-02	k: 1780	n:30000
Cons ci ratio: 4.128169e-02	ci left: 2.263064e-01	ci right 2.358790e-01	k: 6932	n:30000
KS ci ratio: 1.215618e-01	ci left: 3.146011e-02	ci right 3.556422e-02	k: 1004	n:30000
TRANK1   30000 perm   11 sec   (2820 perm/sec)   p_kst 3.346667e-02   p_cons 2.310667e-01   p_joint 5.933333e-02

Joint ci ratio: 8.097071e-02	ci left: 5.310447e-02	ci right 5.761035e-02	k: 2213	n:40000
Cons ci ratio: 3.578378e-02	ci left: 2.266284e-01	ci right 2.349108e-01	k: 9230	n:40000
KS ci ratio: 1.044721e-01	ci left: 3.222101e-02	ci right 3.579705e-02	k: 1359	n:40000
TRANK1   40000 perm   14 sec   (2822 perm/sec)   p_kst 3.397500e-02   p_cons 2.307500e-01   p_joint 5.532500e-02

Joint ci ratio: 7.517213e-02	ci left: 4.963776e-02	ci right 5.353451e-02	k: 2578	n:50000
Cons ci ratio: 3.194619e-02	ci left: 2.277290e-01	ci right 2.351422e-01	k: 11571	n:50000
KS ci ratio: 9.304697e-02	ci left: 3.268272e-02	ci right 3.589164e-02	k: 1713	n:50000
TRANK1   50000 perm   18 sec   (2813 perm/sec)   p_kst 3.426000e-02   p_cons 2.314200e-01   p_joint 5.156000e-02

Outputting figure to mutsig2_images.part000000000181/TRANK1.13_8870_50000_0.03426_0.23142_0.05156.png
                gene_name: TRANK1
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.054 

Current progress: 5 percent done.
TRAK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.072707e-01	ci left: 1.114460e-01	ci right 1.241776e-01	k: 1177	n:10000
Cons ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
KS ci ratio: 6.744565e-02	ci left: 2.439092e-01	ci right 2.610352e-01	k: 2524	n:10000
TRAK1   10000 perm   2 sec   (4671 perm/sec)   p_kst 2.524000e-01   p_cons 4.380000e-02   p_joint 1.177000e-01

Joint ci ratio: 7.115585e-02	ci left: 1.270421e-01	ci right 1.364652e-01	k: 2634	n:20000
Cons ci ratio: 1.323791e-01	ci left: 3.921338e-02	ci right 4.482076e-02	k: 839	n:20000
KS ci ratio: 4.797122e-02	ci left: 2.442585e-01	ci right 2.563142e-01	k: 5005	n:20000
TRAK1   20000 perm   5 sec   (4251 perm/sec)   p_kst 2.502500e-01   p_cons 4.195000e-02   p_joint 1.317000e-01

Joint ci ratio: 7.257176e-02	ci left: 8.540770e-02	ci right 9.187222e-02	k: 2658	n:30000
Cons ci ratio: 1.079984e-01	ci left: 3.979041e-02	ci right 4.436547e-02	k: 1261	n:30000
KS ci ratio: 3.925212e-02	ci left: 2.445780e-01	ci right 2.544039e-01	k: 7484	n:30000
TRAK1   30000 perm   7 sec   (4083 perm/sec)   p_kst 2.494667e-01   p_cons 4.203333e-02   p_joint 8.860000e-02

Joint ci ratio: 6.225691e-02	ci left: 8.736069e-02	ci right 9.299897e-02	k: 3606	n:40000
Cons ci ratio: 9.440182e-02	ci left: 3.937086e-02	ci right 4.329608e-02	k: 1652	n:40000
KS ci ratio: 3.410265e-02	ci left: 2.440472e-01	ci right 2.525393e-01	k: 9931	n:40000
TRAK1   40000 perm   10 sec   (3973 perm/sec)   p_kst 2.482750e-01   p_cons 4.130000e-02   p_joint 9.015000e-02

Outputting figure to mutsig2_images.part000000000181/TRAK1.10_3314_40000_0.24827_0.0413_0.09015.png
                gene_name: TRAK1
               theta_stop: 0.094 
                    nperm: 40000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.093 

Current progress: 7 percent done.
TRERF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.659224e-02	ci left: 1.345280e-01	ci right 1.482816e-01	k: 1413	n:10000
Cons ci ratio: 1.741871e-01	ci left: 4.398826e-02	ci right 5.247740e-02	k: 481	n:10000
KS ci ratio: 4.657119e-02	ci left: 4.049202e-01	ci right 4.243295e-01	k: 4146	n:10000
TRERF1   10000 perm   2 sec   (4756 perm/sec)   p_kst 4.146000e-01   p_cons 4.810000e-02   p_joint 1.413000e-01

Joint ci ratio: 7.914620e-02	ci left: 1.049095e-01	ci right 1.136044e-01	k: 2184	n:20000
Cons ci ratio: 1.203141e-01	ci left: 4.736004e-02	ci right 5.347151e-02	k: 1007	n:20000
KS ci ratio: 3.367772e-02	ci left: 3.969893e-01	ci right 4.106386e-01	k: 8076	n:20000
TRERF1   20000 perm   5 sec   (4335 perm/sec)   p_kst 4.038000e-01   p_cons 5.035000e-02   p_joint 1.092000e-01

Joint ci ratio: 6.004308e-02	ci left: 1.206523e-01	ci right 1.281540e-01	k: 3731	n:30000
Cons ci ratio: 9.988242e-02	ci left: 4.638913e-02	ci right 5.129872e-02	k: 1464	n:30000
KS ci ratio: 2.747959e-02	ci left: 3.985732e-01	ci right 4.097120e-01	k: 12124	n:30000
TRERF1   30000 perm   7 sec   (4165 perm/sec)   p_kst 4.041333e-01   p_cons 4.880000e-02   p_joint 1.243667e-01

Outputting figure to mutsig2_images.part000000000181/TRERF1.10_3659_30000_0.40413_0.0488_0.12437.png
                gene_name: TRERF1
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 9 percent done.
TRIM23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.186529e-01	ci left: 9.253239e-02	ci right 1.043027e-01	k: 983	n:10000
Cons ci ratio: 8.184094e-02	ci left: 1.789079e-01	ci right 1.942751e-01	k: 1865	n:10000
KS ci ratio: 1.078946e-01	ci left: 1.102743e-01	ci right 1.229500e-01	k: 1165	n:10000
TRIM23   10000 perm   2 sec   (5700 perm/sec)   p_kst 1.165000e-01   p_cons 1.865000e-01   p_joint 9.830000e-02

Joint ci ratio: 6.831624e-02	ci left: 1.364999e-01	ci right 1.462047e-01	k: 2826	n:20000
Cons ci ratio: 5.741757e-02	ci left: 1.835451e-01	ci right 1.944454e-01	k: 3779	n:20000
KS ci ratio: 7.541845e-02	ci left: 1.144940e-01	ci right 1.235171e-01	k: 2379	n:20000
TRIM23   20000 perm   4 sec   (5105 perm/sec)   p_kst 1.189500e-01   p_cons 1.889500e-01   p_joint 1.413000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM23.9_1836_20000_0.11895_0.18895_0.1413.png
                gene_name: TRIM23
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 10 percent done.
TRIM33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.074522e-02	ci left: 4.707644e-01	ci right 4.904469e-01	k: 4806	n:10000
Cons ci ratio: 7.614384e-02	ci left: 2.014608e-01	ci right 2.175088e-01	k: 2094	n:10000
KS ci ratio: 3.777764e-02	ci left: 5.085527e-01	ci right 5.282366e-01	k: 5184	n:10000
TRIM33   10000 perm   2 sec   (4525 perm/sec)   p_kst 5.184000e-01   p_cons 2.094000e-01   p_joint 4.806000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM33.9_3464_10000_0.5184_0.2094_0.4806.png
                gene_name: TRIM33
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 12 percent done.
TRIM37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.041956e-02	ci left: 6.145218e-01	ci right 6.336059e-01	k: 6241	n:10000
Cons ci ratio: 3.080322e-02	ci left: 6.085946e-01	ci right 6.277365e-01	k: 6182	n:10000
KS ci ratio: 3.818054e-02	ci left: 5.032509e-01	ci right 5.229414e-01	k: 5131	n:10000
TRIM37   10000 perm   2 sec   (4786 perm/sec)   p_kst 5.131000e-01   p_cons 6.182000e-01   p_joint 6.241000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM37.9_2999_10000_0.5131_0.6182_0.6241.png
                gene_name: TRIM37
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 14 percent done.
TPX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.519609e-02	ci left: 5.437922e-01	ci right 5.633765e-01	k: 5536	n:10000
Cons ci ratio: 5.123949e-02	ci left: 3.596312e-01	ci right 3.786451e-01	k: 3691	n:10000
KS ci ratio: 2.246886e-02	ci left: 7.441210e-01	ci right 7.611316e-01	k: 7527	n:10000
TPX2   10000 perm   2 sec   (4924 perm/sec)   p_kst 7.527000e-01   p_cons 3.691000e-01   p_joint 5.536000e-01

Outputting figure to mutsig2_images.part000000000181/TPX2.8_2308_10000_0.7527_0.3691_0.5536.png
                gene_name: TPX2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 16 percent done.
TRHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.574771e-02	ci left: 5.360794e-01	ci right 5.556939e-01	k: 5459	n:10000
Cons ci ratio: 2.021733e-02	ci left: 7.817816e-01	ci right 7.978492e-01	k: 7899	n:10000
KS ci ratio: 5.392946e-02	ci left: 3.362752e-01	ci right 3.550148e-01	k: 3456	n:10000
TRHR   10000 perm   2 sec   (5664 perm/sec)   p_kst 3.456000e-01   p_cons 7.899000e-01   p_joint 5.459000e-01

Outputting figure to mutsig2_images.part000000000181/TRHR.8_1205_10000_0.3456_0.7899_0.5459.png
                gene_name: TRHR
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 17 percent done.
TRIM22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.975552e-02	ci left: 6.248728e-01	ci right 6.438489e-01	k: 6344	n:10000
KS ci ratio: 1.481229e-02	ci left: 8.684609e-01	ci right 8.815198e-01	k: 8751	n:10000
TRIM22   10000 perm   2 sec   (5552 perm/sec)   p_kst 8.751000e-01   p_cons 6.344000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIM22.8_1525_10000_0.8751_0.6344_1.png
                gene_name: TRIM22
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
TPTE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.463924e-01	ci left: 6.198316e-02	ci right 7.187095e-02	k: 668	n:10000
Cons ci ratio: 3.390452e-02	ci left: 5.622325e-01	ci right 5.817255e-01	k: 5720	n:10000
KS ci ratio: 2.067437e-01	ci left: 3.110398e-02	ci right 3.837033e-02	k: 346	n:10000
TPTE2   10000 perm   2 sec   (5412 perm/sec)   p_kst 3.460000e-02   p_cons 5.720000e-01   p_joint 6.680000e-02

Joint ci ratio: 9.569699e-02	ci left: 7.368425e-02	ci right 8.113917e-02	k: 1547	n:20000
Cons ci ratio: 2.403436e-02	ci left: 5.639054e-01	ci right 5.776740e-01	k: 11416	n:20000
KS ci ratio: 1.425113e-01	ci left: 3.384702e-02	ci right 3.908886e-02	k: 728	n:20000
TPTE2   20000 perm   4 sec   (4885 perm/sec)   p_kst 3.640000e-02   p_cons 5.708000e-01   p_joint 7.735000e-02

Joint ci ratio: 7.258673e-02	ci left: 8.537492e-02	ci right 9.183834e-02	k: 2657	n:30000
Cons ci ratio: 2.032906e-02	ci left: 5.477862e-01	ci right 5.590701e-01	k: 16603	n:30000
KS ci ratio: 1.178510e-01	ci left: 3.346692e-02	ci right 3.769031e-02	k: 1066	n:30000
TPTE2   30000 perm   6 sec   (4680 perm/sec)   p_kst 3.553333e-02   p_cons 5.534333e-01   p_joint 8.856667e-02

Joint ci ratio: 7.053711e-02	ci left: 6.914121e-02	ci right 7.422118e-02	k: 2866	n:40000
Cons ci ratio: 1.706398e-02	ci left: 5.639544e-01	ci right 5.736856e-01	k: 22753	n:40000
KS ci ratio: 1.024989e-01	ci left: 3.346411e-02	ci right 3.710376e-02	k: 1410	n:40000
TPTE2   40000 perm   9 sec   (4544 perm/sec)   p_kst 3.525000e-02   p_cons 5.688250e-01   p_joint 7.165000e-02

Joint ci ratio: 6.413513e-02	ci left: 6.728602e-02	ci right 7.176411e-02	k: 3475	n:50000
Cons ci ratio: 1.571441e-02	ci left: 5.500904e-01	ci right 5.588233e-01	k: 27723	n:50000
KS ci ratio: 9.243444e-02	ci left: 3.311286e-02	ci right 3.634145e-02	k: 1735	n:50000
TPTE2   50000 perm   11 sec   (4439 perm/sec)   p_kst 3.470000e-02   p_cons 5.544600e-01   p_joint 6.950000e-02

Outputting figure to mutsig2_images.part000000000181/TPTE2.7_1649_50000_0.0347_0.55446_0.0695.png
                gene_name: TPTE2
               theta_stop: 0.092 
                    nperm: 50000 
                     p_ks: 0.035 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.070 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.072 

Current progress: 21 percent done.
TRAPPC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.610965e-02	ci left: 5.310723e-01	ci right 5.507039e-01	k: 5409	n:10000
Cons ci ratio: 7.688723e-02	ci left: 1.983069e-01	ci right 2.142646e-01	k: 2062	n:10000
KS ci ratio: 5.202967e-02	ci left: 3.525721e-01	ci right 3.715083e-01	k: 3620	n:10000
TRAPPC9   10000 perm   2 sec   (4805 perm/sec)   p_kst 3.620000e-01   p_cons 2.062000e-01   p_joint 5.409000e-01

Outputting figure to mutsig2_images.part000000000181/TRAPPC9.7_3833_10000_0.362_0.2062_0.5409.png
                gene_name: TRAPPC9
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 22 percent done.
TRDN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.508232e-02	ci left: 5.453952e-01	ci right 5.649726e-01	k: 5552	n:10000
Cons ci ratio: 2.648848e-02	ci left: 6.773041e-01	ci right 6.955872e-01	k: 6865	n:10000
KS ci ratio: 4.919105e-02	ci left: 3.787315e-01	ci right 3.979336e-01	k: 3883	n:10000
TRDN   10000 perm   2 sec   (4748 perm/sec)   p_kst 3.883000e-01   p_cons 6.865000e-01   p_joint 5.552000e-01

Outputting figure to mutsig2_images.part000000000181/TRDN.7_2354_10000_0.3883_0.6865_0.5552.png
                gene_name: TRDN
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.56 

Current progress: 24 percent done.
TRAF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.019685e-01	ci left: 3.262466e-02	ci right 4.004861e-02	k: 362	n:10000
Cons ci ratio: 1.289403e-01	ci left: 7.912021e-02	ci right 9.012318e-02	k: 845	n:10000
KS ci ratio: 1.297800e-01	ci left: 7.814990e-02	ci right 8.909410e-02	k: 835	n:10000
TRAF3   10000 perm   2 sec   (5344 perm/sec)   p_kst 8.350000e-02   p_cons 8.450000e-02   p_joint 3.620000e-02

Joint ci ratio: 1.320512e-01	ci left: 3.940703e-02	ci right 4.502705e-02	k: 843	n:20000
Cons ci ratio: 9.685466e-02	ci left: 7.202203e-02	ci right 7.940189e-02	k: 1513	n:20000
KS ci ratio: 8.843498e-02	ci left: 8.548063e-02	ci right 9.343920e-02	k: 1788	n:20000
TRAF3   20000 perm   4 sec   (4849 perm/sec)   p_kst 8.940000e-02   p_cons 7.565000e-02   p_joint 4.215000e-02

Joint ci ratio: 8.905410e-02	ci left: 5.795871e-02	ci right 6.339342e-02	k: 1819	n:30000
Cons ci ratio: 7.532452e-02	ci left: 7.967266e-02	ci right 8.594175e-02	k: 2483	n:30000
KS ci ratio: 7.379646e-02	ci left: 8.278542e-02	ci right 8.916169e-02	k: 2578	n:30000
TRAF3   30000 perm   6 sec   (4638 perm/sec)   p_kst 8.593333e-02   p_cons 8.276667e-02   p_joint 6.063333e-02

Outputting figure to mutsig2_images.part000000000181/TRAF3.6_1747_30000_0.085933_0.082767_0.060633.png
                gene_name: TRAF3
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.080 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.063 

Current progress: 26 percent done.
TRAF3IP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.403689e-02	ci left: 4.322344e-01	ci right 4.517994e-01	k: 4420	n:10000
Cons ci ratio: 7.997575e-02	ci left: 1.858959e-01	ci right 2.014830e-01	k: 1936	n:10000
KS ci ratio: 2.522196e-02	ci left: 6.981718e-01	ci right 7.161074e-01	k: 7072	n:10000
TRAF3IP3   10000 perm   2 sec   (5546 perm/sec)   p_kst 7.072000e-01   p_cons 1.936000e-01   p_joint 4.420000e-01

Outputting figure to mutsig2_images.part000000000181/TRAF3IP3.6_1716_10000_0.7072_0.1936_0.442.png
                gene_name: TRAF3IP3
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 28 percent done.
TRAF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.877557e-02	ci left: 2.366945e-01	ci right 2.536542e-01	k: 2451	n:10000
Cons ci ratio: 1.385609e-01	ci left: 6.894400e-02	ci right 7.930573e-02	k: 740	n:10000
KS ci ratio: 3.670990e-02	ci left: 5.228628e-01	ci right 5.425181e-01	k: 5327	n:10000
TRAF5   10000 perm   2 sec   (5552 perm/sec)   p_kst 5.327000e-01   p_cons 7.400000e-02   p_joint 2.451000e-01

Joint ci ratio: 5.238263e-02	ci left: 2.129874e-01	ci right 2.244945e-01	k: 4374	n:20000
Cons ci ratio: 9.925096e-02	ci left: 6.874809e-02	ci right 7.597683e-02	k: 1446	n:20000
KS ci ratio: 2.641669e-02	ci left: 5.170504e-01	ci right 5.309426e-01	k: 10480	n:20000
TRAF5   20000 perm   5 sec   (4305 perm/sec)   p_kst 5.240000e-01   p_cons 7.230000e-02   p_joint 2.187000e-01

Outputting figure to mutsig2_images.part000000000181/TRAF5.6_1714_20000_0.524_0.0723_0.2187.png
                gene_name: TRAF5
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 29 percent done.
TRAPPC10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.198086e-02	ci left: 1.465847e-01	ci right 1.608177e-01	k: 1536	n:10000
Cons ci ratio: 2.165393e-02	ci left: 7.577777e-01	ci right 7.744670e-01	k: 7662	n:10000
KS ci ratio: 1.434278e-01	ci left: 6.449503e-02	ci right 7.455749e-02	k: 694	n:10000
TRAPPC10   10000 perm   2 sec   (4453 perm/sec)   p_kst 6.940000e-02   p_cons 7.662000e-01   p_joint 1.536000e-01

Joint ci ratio: 6.260429e-02	ci left: 1.587444e-01	ci right 1.690536e-01	k: 3277	n:20000
Cons ci ratio: 1.545262e-02	ci left: 7.569427e-01	ci right 7.687808e-01	k: 15258	n:20000
KS ci ratio: 9.984730e-02	ci left: 6.796658e-02	ci right 7.515858e-02	k: 1430	n:20000
TRAPPC10   20000 perm   5 sec   (4080 perm/sec)   p_kst 7.150000e-02   p_cons 7.629000e-01   p_joint 1.638500e-01

Outputting figure to mutsig2_images.part000000000181/TRAPPC10.6_3872_20000_0.0715_0.7629_0.16385.png
                gene_name: TRAPPC10
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.075 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 31 percent done.
TRIM24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.051743e-02	ci left: 4.735616e-01	ci right 4.932481e-01	k: 4834	n:10000
Cons ci ratio: 7.519138e-02	ci left: 2.056014e-01	ci right 2.217657e-01	k: 2136	n:10000
KS ci ratio: 3.878092e-02	ci left: 4.954504e-01	ci right 5.151465e-01	k: 5053	n:10000
TRIM24   10000 perm   2 sec   (4850 perm/sec)   p_kst 5.053000e-01   p_cons 2.136000e-01   p_joint 4.834000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM24.6_3229_10000_0.5053_0.2136_0.4834.png
                gene_name: TRIM24
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 33 percent done.
TRIM38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.216596e-02	ci left: 9.064824e-01	ci right 9.176761e-01	k: 9122	n:10000
KS ci ratio: 8.990802e-03	ci left: 9.456495e-01	ci right 9.542860e-01	k: 9501	n:10000
TRIM38   10000 perm   2 sec   (5759 perm/sec)   p_kst 9.501000e-01   p_cons 9.122000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIM38.6_1422_10000_0.9501_0.9122_1.png
                gene_name: TRIM38
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 34 percent done.
TRIM41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.931866e-02	ci left: 2.338293e-01	ci right 2.507211e-01	k: 2422	n:10000
Cons ci ratio: 1.105967e-01	ci left: 1.053948e-01	ci right 1.178325e-01	k: 1115	n:10000
KS ci ratio: 8.496310e-02	ci left: 1.679914e-01	ci right 1.829981e-01	k: 1754	n:10000
TRIM41   10000 perm   2 sec   (5496 perm/sec)   p_kst 1.754000e-01   p_cons 1.115000e-01   p_joint 2.422000e-01

Joint ci ratio: 7.380830e-02	ci left: 1.190194e-01	ci right 1.281903e-01	k: 2471	n:20000
Cons ci ratio: 7.781324e-02	ci left: 1.082015e-01	ci right 1.170115e-01	k: 2251	n:20000
KS ci ratio: 6.032916e-02	ci left: 1.690156e-01	ci right 1.795793e-01	k: 3485	n:20000
TRIM41   20000 perm   4 sec   (4896 perm/sec)   p_kst 1.742500e-01   p_cons 1.125500e-01   p_joint 1.235500e-01

Outputting figure to mutsig2_images.part000000000181/TRIM41.6_2015_20000_0.17425_0.11255_0.12355.png
                gene_name: TRIM41
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 36 percent done.
TRA2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.881696e-02	ci left: 1.904255e-01	ci right 2.061507e-01	k: 1982	n:10000
Cons ci ratio: 2.049155e-01	ci left: 3.167400e-02	ci right 3.899992e-02	k: 352	n:10000
KS ci ratio: 2.780176e-02	ci left: 6.559541e-01	ci right 6.745495e-01	k: 6653	n:10000
TRA2B   10000 perm   2 sec   (6175 perm/sec)   p_kst 6.653000e-01   p_cons 3.520000e-02   p_joint 1.982000e-01

Joint ci ratio: 4.537575e-02	ci left: 2.655435e-01	ci right 2.779229e-01	k: 5434	n:20000
Cons ci ratio: 1.435362e-01	ci left: 3.336431e-02	ci right 3.857172e-02	k: 718	n:20000
KS ci ratio: 1.984081e-02	ci left: 6.545924e-01	ci right 6.677607e-01	k: 13224	n:20000
TRA2B   20000 perm   4 sec   (5547 perm/sec)   p_kst 6.612000e-01   p_cons 3.590000e-02   p_joint 2.717000e-01

Joint ci ratio: 5.005488e-02	ci left: 1.654678e-01	ci right 1.739962e-01	k: 5091	n:30000
Cons ci ratio: 1.194267e-01	ci left: 3.259274e-02	ci right 3.676467e-02	k: 1039	n:30000
KS ci ratio: 1.608822e-02	ci left: 6.589239e-01	ci right 6.696443e-01	k: 19929	n:30000
TRA2B   30000 perm   6 sec   (5318 perm/sec)   p_kst 6.643000e-01   p_cons 3.463333e-02   p_joint 1.697000e-01

Joint ci ratio: 4.496327e-02	ci left: 1.560728e-01	ci right 1.632767e-01	k: 6386	n:40000
Cons ci ratio: 1.033755e-01	ci left: 3.290342e-02	ci right 3.651454e-02	k: 1387	n:40000
KS ci ratio: 1.389933e-02	ci left: 6.607265e-01	ci right 6.699995e-01	k: 26615	n:40000
TRA2B   40000 perm   8 sec   (5159 perm/sec)   p_kst 6.653750e-01   p_cons 3.467500e-02   p_joint 1.596500e-01

Joint ci ratio: 3.751874e-02	ci left: 1.758272e-01	ci right 1.825701e-01	k: 8959	n:50000
Cons ci ratio: 9.126982e-02	ci left: 3.395377e-02	ci right 3.722043e-02	k: 1778	n:50000
KS ci ratio: 1.238163e-02	ci left: 6.630300e-01	ci right 6.713106e-01	k: 33359	n:50000
TRA2B   50000 perm   10 sec   (4905 perm/sec)   p_kst 6.671800e-01   p_cons 3.556000e-02   p_joint 1.791800e-01

Outputting figure to mutsig2_images.part000000000181/TRA2B.5_903_50000_0.66718_0.03556_0.17918.png
                gene_name: TRA2B
               theta_stop: 0.091 
                    nperm: 50000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.034 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.18 

Current progress: 38 percent done.
TRAK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.535413e-02	ci left: 3.246562e-01	ci right 3.432406e-01	k: 3339	n:10000
Cons ci ratio: 3.077061e-02	ci left: 6.090969e-01	ci right 6.282339e-01	k: 6187	n:10000
KS ci ratio: 8.664465e-02	ci left: 1.624881e-01	ci right 1.773047e-01	k: 1698	n:10000
TRAK2   10000 perm   2 sec   (5221 perm/sec)   p_kst 1.698000e-01   p_cons 6.187000e-01   p_joint 3.339000e-01

Outputting figure to mutsig2_images.part000000000181/TRAK2.5_2805_10000_0.1698_0.6187_0.3339.png
                gene_name: TRAK2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 40 percent done.
TREM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.391754e-02	ci left: 3.363745e-01	ci right 3.551154e-01	k: 3457	n:10000
Cons ci ratio: 3.125513e-02	ci left: 6.016648e-01	ci right 6.208704e-01	k: 6113	n:10000
KS ci ratio: 7.546088e-02	ci left: 2.044183e-01	ci right 2.205496e-01	k: 2124	n:10000
TREM1   10000 perm   2 sec   (6298 perm/sec)   p_kst 2.124000e-01   p_cons 6.113000e-01   p_joint 3.457000e-01

Outputting figure to mutsig2_images.part000000000181/TREM1.5_721_10000_0.2124_0.6113_0.3457.png
                gene_name: TREM1
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 41 percent done.
TRIB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.227051e-02	ci left: 5.863057e-01	ci right 6.056384e-01	k: 5960	n:10000
Cons ci ratio: 5.815626e-02	ci left: 3.032226e-01	ci right 3.214868e-01	k: 3123	n:10000
KS ci ratio: 4.697642e-02	ci left: 4.007361e-01	ci right 4.201161e-01	k: 4104	n:10000
TRIB2   10000 perm   2 sec   (6551 perm/sec)   p_kst 4.104000e-01   p_cons 3.123000e-01   p_joint 5.960000e-01

Outputting figure to mutsig2_images.part000000000181/TRIB2.5_1044_10000_0.4104_0.3123_0.596.png
                gene_name: TRIB2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 43 percent done.
TRIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.396856e-02	ci left: 2.641865e-01	ci right 2.817460e-01	k: 2729	n:10000
Cons ci ratio: 1.266640e-01	ci left: 8.183830e-02	ci right 9.300341e-02	k: 873	n:10000
KS ci ratio: 3.056233e-02	ci left: 6.123115e-01	ci right 6.314175e-01	k: 6219	n:10000
TRIM2   10000 perm   2 sec   (5617 perm/sec)   p_kst 6.219000e-01   p_cons 8.730000e-02   p_joint 2.729000e-01

Joint ci ratio: 3.554546e-02	ci left: 3.713727e-01	ci right 3.848628e-01	k: 7562	n:20000
Cons ci ratio: 8.920376e-02	ci left: 8.410890e-02	ci right 9.201134e-02	k: 1760	n:20000
KS ci ratio: 2.142849e-02	ci left: 6.191508e-01	ci right 6.326125e-01	k: 12518	n:20000
TRIM2   20000 perm   4 sec   (5077 perm/sec)   p_kst 6.259000e-01   p_cons 8.800000e-02   p_joint 3.781000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM2.5_2364_20000_0.6259_0.088_0.3781.png
                gene_name: TRIM2
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.088 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.092 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 45 percent done.
TRIM32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.935064e-02	ci left: 1.279678e-01	ci right 1.414457e-01	k: 1346	n:10000
Cons ci ratio: 4.962867e-02	ci left: 3.745520e-01	ci right 3.937155e-01	k: 3841	n:10000
KS ci ratio: 1.164983e-01	ci left: 9.574517e-02	ci right 1.076880e-01	k: 1016	n:10000
TRIM32   10000 perm   2 sec   (5783 perm/sec)   p_kst 1.016000e-01   p_cons 3.841000e-01   p_joint 1.346000e-01

Joint ci ratio: 5.780443e-02	ci left: 1.815181e-01	ci right 1.923731e-01	k: 3738	n:20000
Cons ci ratio: 3.477943e-02	ci left: 3.816369e-01	ci right 3.951955e-01	k: 7768	n:20000
KS ci ratio: 8.464332e-02	ci left: 9.273591e-02	ci right 1.009817e-01	k: 1936	n:20000
TRIM32   20000 perm   4 sec   (5198 perm/sec)   p_kst 9.680000e-02   p_cons 3.884000e-01   p_joint 1.869000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM32.5_1966_20000_0.0968_0.3884_0.1869.png
                gene_name: TRIM32
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 47 percent done.
TRAF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.920196e-02	ci left: 4.900514e-01	ci right 5.097486e-01	k: 4999	n:10000
Cons ci ratio: 3.749121e-02	ci left: 5.123546e-01	ci right 5.320325e-01	k: 5222	n:10000
KS ci ratio: 4.770216e-02	ci left: 3.933658e-01	ci right 4.126907e-01	k: 4030	n:10000
TRAF6   10000 perm   2 sec   (5323 perm/sec)   p_kst 4.030000e-01   p_cons 5.222000e-01   p_joint 4.999000e-01

Outputting figure to mutsig2_images.part000000000181/TRAF6.4_1593_10000_0.403_0.5222_0.4999.png
                gene_name: TRAF6
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 48 percent done.
TRDMT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.421586e-02	ci left: 4.302397e-01	ci right 4.497953e-01	k: 4400	n:10000
Cons ci ratio: 3.259983e-02	ci left: 5.813888e-01	ci right 6.007581e-01	k: 5911	n:10000
KS ci ratio: 6.149978e-02	ci left: 2.799299e-01	ci right 2.977933e-01	k: 2888	n:10000
TRDMT1   10000 perm   2 sec   (6357 perm/sec)   p_kst 2.888000e-01   p_cons 5.911000e-01   p_joint 4.400000e-01

Outputting figure to mutsig2_images.part000000000181/TRDMT1.4_1220_10000_0.2888_0.5911_0.44.png
                gene_name: TRDMT1
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 50 percent done.
TREM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.380712e-02	ci left: 1.719241e-01	ci right 1.870631e-01	k: 1794	n:10000
Cons ci ratio: 9.124547e-02	ci left: 1.486448e-01	ci right 1.629564e-01	k: 1557	n:10000
KS ci ratio: 1.197356e-01	ci left: 9.097541e-02	ci right 1.026607e-01	k: 967	n:10000
TREM2   10000 perm   2 sec   (5758 perm/sec)   p_kst 9.670000e-02   p_cons 1.557000e-01   p_joint 1.794000e-01

Joint ci ratio: 8.249123e-02	ci left: 9.724970e-02	ci right 1.056666e-01	k: 2028	n:20000
Cons ci ratio: 6.471824e-02	ci left: 1.499604e-01	ci right 1.600401e-01	k: 3099	n:20000
KS ci ratio: 8.413924e-02	ci left: 9.376599e-02	ci right 1.020513e-01	k: 1957	n:20000
TREM2   20000 perm   4 sec   (5175 perm/sec)   p_kst 9.785000e-02   p_cons 1.549500e-01   p_joint 1.014000e-01

Outputting figure to mutsig2_images.part000000000181/TREM2.4_713_20000_0.09785_0.15495_0.1014.png
                gene_name: TREM2
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.094 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.097 
    ci_joint_bounds_right: 0.11 

Current progress: 52 percent done.
TRIM10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.755381e-02	ci left: 3.948596e-01	ci right 4.141961e-01	k: 4045	n:10000
Cons ci ratio: 5.979314e-02	ci left: 2.915232e-01	ci right 3.095931e-01	k: 3005	n:10000
KS ci ratio: 4.210789e-02	ci left: 4.543870e-01	ci right 4.740339e-01	k: 4642	n:10000
TRIM10   10000 perm   2 sec   (6064 perm/sec)   p_kst 4.642000e-01   p_cons 3.005000e-01   p_joint 4.045000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM10.4_1562_10000_0.4642_0.3005_0.4045.png
                gene_name: TRIM10
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 53 percent done.
TRIM13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.286032e-02	ci left: 4.456034e-01	ci right 4.652226e-01	k: 4554	n:10000
Cons ci ratio: 8.741968e-03	ci left: 9.483556e-01	ci right 9.567782e-01	k: 9527	n:10000
KS ci ratio: 5.191724e-02	ci left: 3.535663e-01	ci right 3.725136e-01	k: 3630	n:10000
TRIM13   10000 perm   2 sec   (5853 perm/sec)   p_kst 3.630000e-01   p_cons 9.527000e-01   p_joint 4.554000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM13.4_1241_10000_0.363_0.9527_0.4554.png
                gene_name: TRIM13
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 55 percent done.
TRIM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.538916e-02	ci left: 8.596771e-01	ci right 8.731087e-01	k: 8665	n:10000
KS ci ratio: 3.016730e-02	ci left: 6.184406e-01	ci right 6.374848e-01	k: 6280	n:10000
TRIM3   10000 perm   2 sec   (5452 perm/sec)   p_kst 6.280000e-01   p_cons 8.665000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIM3.4_2279_10000_0.628_0.8665_1.png
                gene_name: TRIM3
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
TRIM36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.233755e-02	ci left: 5.853022e-01	ci right 6.046425e-01	k: 5950	n:10000
Cons ci ratio: 6.262613e-02	ci left: 2.726011e-01	ci right 2.903264e-01	k: 2814	n:10000
KS ci ratio: 3.295165e-02	ci left: 5.761720e-01	ci right 5.955779e-01	k: 5859	n:10000
TRIM36   10000 perm   2 sec   (5603 perm/sec)   p_kst 5.859000e-01   p_cons 2.814000e-01   p_joint 5.950000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM36.4_2478_10000_0.5859_0.2814_0.595.png
                gene_name: TRIM36
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.60 

Current progress: 59 percent done.
TRAF3IP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.444763e-02	ci left: 5.544138e-01	ci right 5.739488e-01	k: 5642	n:10000
Cons ci ratio: 5.807515e-02	ci left: 3.038177e-01	ci right 3.220914e-01	k: 3129	n:10000
KS ci ratio: 3.332647e-02	ci left: 5.706554e-01	ci right 5.900977e-01	k: 5804	n:10000
TRAF3IP2   10000 perm   2 sec   (6034 perm/sec)   p_kst 5.804000e-01   p_cons 3.129000e-01   p_joint 5.642000e-01

Outputting figure to mutsig2_images.part000000000181/TRAF3IP2.3_1730_10000_0.5804_0.3129_0.5642.png
                gene_name: TRAF3IP2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 60 percent done.
TRAFD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.194651e-02	ci left: 2.205969e-01	ci right 2.371614e-01	k: 2288	n:10000
Cons ci ratio: 5.959467e-02	ci left: 2.929109e-01	ci right 3.110046e-01	k: 3019	n:10000
KS ci ratio: 1.027259e-01	ci left: 1.205332e-01	ci right 1.336849e-01	k: 1270	n:10000
TRAFD1   10000 perm   2 sec   (5775 perm/sec)   p_kst 1.270000e-01   p_cons 3.019000e-01   p_joint 2.288000e-01

Joint ci ratio: 6.725318e-02	ci left: 1.402950e-01	ci right 1.501084e-01	k: 2903	n:20000
Cons ci ratio: 4.086576e-02	ci left: 3.086142e-01	ci right 3.215396e-01	k: 6301	n:20000
KS ci ratio: 7.406493e-02	ci left: 1.182814e-01	ci right 1.274285e-01	k: 2456	n:20000
TRAFD1   20000 perm   4 sec   (5234 perm/sec)   p_kst 1.228000e-01   p_cons 3.150500e-01   p_joint 1.451500e-01

Outputting figure to mutsig2_images.part000000000181/TRAFD1.3_1793_20000_0.1228_0.31505_0.14515.png
                gene_name: TRAFD1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 62 percent done.
TRIM17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.059863e-02	ci left: 4.725626e-01	ci right 4.922477e-01	k: 4824	n:10000
Cons ci ratio: 8.144362e-03	ci left: 9.546142e-01	ci right 9.625159e-01	k: 9587	n:10000
KS ci ratio: 8.332662e-02	ci left: 1.735958e-01	ci right 1.887903e-01	k: 1811	n:10000
TRIM17   10000 perm   2 sec   (6109 perm/sec)   p_kst 1.811000e-01   p_cons 9.587000e-01   p_joint 4.824000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM17.3_1607_10000_0.1811_0.9587_0.4824.png
                gene_name: TRIM17
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 64 percent done.
TRIM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.614221e-02	ci left: 4.094040e-01	ci right 4.288431e-01	k: 4191	n:10000
Cons ci ratio: 1.334449e-02	ci left: 8.900563e-01	ci right 9.021119e-01	k: 8962	n:10000
KS ci ratio: 7.192613e-02	ci left: 2.206956e-01	ci right 2.372626e-01	k: 2289	n:10000
TRIM4   10000 perm   1 sec   (6857 perm/sec)   p_kst 2.289000e-01   p_cons 8.962000e-01   p_joint 4.191000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM4.3_1531_10000_0.2289_0.8962_0.4191.png
                gene_name: TRIM4
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 66 percent done.
TRAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.029523e-02	ci left: 2.287917e-01	ci right 2.455617e-01	k: 2371	n:10000
Cons ci ratio: 1.146988e-02	ci left: 9.157457e-01	ci right 9.264074e-01	k: 9212	n:10000
KS ci ratio: 1.991394e-01	ci left: 3.357607e-02	ci right 4.109654e-02	k: 372	n:10000
TRAF1   10000 perm   2 sec   (6144 perm/sec)   p_kst 3.720000e-02   p_cons 9.212000e-01   p_joint 2.371000e-01

Joint ci ratio: 5.188953e-02	ci left: 2.162065e-01	ci right 2.277744e-01	k: 4439	n:20000
Cons ci ratio: 8.217043e-03	ci left: 9.153878e-01	ci right 9.229898e-01	k: 18385	n:20000
KS ci ratio: 1.472962e-01	ci left: 3.167591e-02	ci right 3.676068e-02	k: 683	n:20000
TRAF1   20000 perm   3 sec   (5807 perm/sec)   p_kst 3.415000e-02   p_cons 9.192500e-01   p_joint 2.219500e-01

Joint ci ratio: 4.024083e-02	ci left: 2.354407e-01	ci right 2.451430e-01	k: 7208	n:30000
Cons ci ratio: 6.646037e-03	ci left: 9.175170e-01	ci right 9.236680e-01	k: 27619	n:30000
KS ci ratio: 1.192486e-01	ci left: 3.268985e-02	ci right 3.686754e-02	k: 1042	n:30000
TRAF1   30000 perm   5 sec   (5629 perm/sec)   p_kst 3.473333e-02   p_cons 9.206333e-01   p_joint 2.402667e-01

Joint ci ratio: 3.647786e-02	ci left: 2.199219e-01	ci right 2.281182e-01	k: 8960	n:40000
Cons ci ratio: 5.700459e-03	ci left: 9.193541e-01	ci right 9.246344e-01	k: 36881	n:40000
KS ci ratio: 1.031064e-01	ci left: 3.307405e-02	ci right 3.669388e-02	k: 1394	n:40000
TRAF1   40000 perm   7 sec   (5460 perm/sec)   p_kst 3.485000e-02   p_cons 9.220250e-01   p_joint 2.240000e-01

Joint ci ratio: 3.104635e-02	ci left: 2.379924e-01	ci right 2.455177e-01	k: 12087	n:50000
Cons ci ratio: 5.100838e-03	ci left: 9.195743e-01	ci right 9.242966e-01	k: 46098	n:50000
KS ci ratio: 9.287877e-02	ci left: 3.280003e-02	ci right 3.601432e-02	k: 1719	n:50000
TRAF1   50000 perm   9 sec   (5342 perm/sec)   p_kst 3.438000e-02   p_cons 9.219600e-01   p_joint 2.417400e-01

Outputting figure to mutsig2_images.part000000000181/TRAF1.2_1279_50000_0.03438_0.92196_0.24174.png
                gene_name: TRAF1
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 67 percent done.
TRAF3IP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.679055e-02	ci left: 3.134405e-01	ci right 3.318629e-01	k: 3226	n:10000
Cons ci ratio: 4.579340e-02	ci left: 4.130914e-01	ci right 4.325536e-01	k: 4228	n:10000
KS ci ratio: 6.717872e-02	ci left: 2.453921e-01	ci right 2.625515e-01	k: 2539	n:10000
TRAF3IP1   10000 perm   2 sec   (6222 perm/sec)   p_kst 2.539000e-01   p_cons 4.228000e-01   p_joint 3.226000e-01

Outputting figure to mutsig2_images.part000000000181/TRAF3IP1.2_2144_10000_0.2539_0.4228_0.3226.png
                gene_name: TRAF3IP1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 69 percent done.
TRAF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.171684e-03	ci left: 9.727020e-01	ci right 9.788166e-01	k: 9759	n:10000
KS ci ratio: 1.384084e-02	ci left: 8.828843e-01	ci right 8.952880e-01	k: 8892	n:10000
TRAF4   10000 perm   1 sec   (6829 perm/sec)   p_kst 8.892000e-01   p_cons 9.759000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRAF4.2_1441_10000_0.8892_0.9759_1.png
                gene_name: TRAF4
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
TRAF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.507522e-02	ci left: 8.644763e-01	ci right 8.777067e-01	k: 8712	n:10000
KS ci ratio: 9.742198e-03	ci left: 9.371348e-01	ci right 9.464058e-01	k: 9419	n:10000
TRAF7   10000 perm   2 sec   (6224 perm/sec)   p_kst 9.419000e-01   p_cons 8.712000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRAF7.2_2093_10000_0.9419_0.8712_1.png
                gene_name: TRAF7
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
TRAIP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.207662e-02	ci left: 7.506950e-01	ci right 7.675538e-01	k: 7592	n:10000
Cons ci ratio: 2.773937e-02	ci left: 6.569607e-01	ci right 6.755424e-01	k: 6663	n:10000
KS ci ratio: 7.094230e-02	ci left: 2.255330e-01	ci right 2.422223e-01	k: 2338	n:10000
TRAIP   10000 perm   2 sec   (5882 perm/sec)   p_kst 2.338000e-01   p_cons 6.663000e-01   p_joint 7.592000e-01

Outputting figure to mutsig2_images.part000000000181/TRAIP.2_1470_10000_0.2338_0.6663_0.7592.png
                gene_name: TRAIP
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 74 percent done.
TRAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.506595e-02	ci left: 2.575566e-01	ci right 2.749797e-01	k: 2662	n:10000
KS ci ratio: 2.148471e-02	ci left: 7.606116e-01	ci right 7.772314e-01	k: 7690	n:10000
TRAM1   10000 perm   1 sec   (6683 perm/sec)   p_kst 7.690000e-01   p_cons 2.662000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRAM1.2_1169_10000_0.769_0.2662_1.png
                gene_name: TRAM1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
TRAM1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.146053e-02	ci left: 7.610165e-01	ci right 7.776263e-01	k: 7694	n:10000
KS ci ratio: 1.019629e-02	ci left: 9.317489e-01	ci right 9.413948e-01	k: 9367	n:10000
TRAM1L1   10000 perm   1 sec   (6826 perm/sec)   p_kst 9.367000e-01   p_cons 7.694000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRAM1L1.2_1114_10000_0.9367_0.7694_1.png
                gene_name: TRAM1L1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
TRAPPC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.883829e-02	ci left: 8.046079e-01	ci right 8.200097e-01	k: 8124	n:10000
KS ci ratio: 1.816171e-02	ci left: 8.156806e-01	ci right 8.307306e-01	k: 8233	n:10000
TRAPPC4   10000 perm   2 sec   (6645 perm/sec)   p_kst 8.233000e-01   p_cons 8.124000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRAPPC4.2_680_10000_0.8233_0.8124_1.png
                gene_name: TRAPPC4
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
TRAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.148566e-02	ci left: 9.155397e-01	ci right 9.262136e-01	k: 9210	n:10000
Cons ci ratio: 4.444986e-02	ci left: 4.276467e-01	ci right 4.471898e-01	k: 4374	n:10000
KS ci ratio: 8.010399e-02	ci left: 1.854036e-01	ci right 2.009755e-01	k: 1931	n:10000
TRAT1   10000 perm   2 sec   (6163 perm/sec)   p_kst 1.931000e-01   p_cons 4.374000e-01   p_joint 9.210000e-01

Outputting figure to mutsig2_images.part000000000181/TRAT1.2_585_10000_0.1931_0.4374_0.921.png
                gene_name: TRAT1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 81 percent done.
TREH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.395300e-02	ci left: 5.615307e-01	ci right 5.810277e-01	k: 5713	n:10000
Cons ci ratio: 5.133863e-02	ci left: 3.587363e-01	ci right 3.777405e-01	k: 3682	n:10000
KS ci ratio: 4.126282e-02	ci left: 4.644718e-01	ci right 4.841432e-01	k: 4743	n:10000
TREH   10000 perm   2 sec   (6020 perm/sec)   p_kst 4.743000e-01   p_cons 3.682000e-01   p_joint 5.713000e-01

Outputting figure to mutsig2_images.part000000000181/TREH.2_1811_10000_0.4743_0.3682_0.5713.png
                gene_name: TREH
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 83 percent done.
TREX1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 84 percent done.
TRH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.696112e-01	ci left: 1.790635e-02	ci right 2.357766e-02	k: 206	n:10000
Cons ci ratio: 2.288572e-01	ci left: 2.523219e-02	ci right 3.184628e-02	k: 284	n:10000
KS ci ratio: 1.182535e-01	ci left: 9.311639e-02	ci right 1.049184e-01	k: 989	n:10000
TRH   10000 perm   1 sec   (6687 perm/sec)   p_kst 9.890000e-02   p_cons 2.840000e-02   p_joint 2.060000e-02

Joint ci ratio: 1.140188e-01	ci left: 5.260997e-02	ci right 5.901994e-02	k: 1115	n:20000
Cons ci ratio: 1.454352e-01	ci left: 3.249578e-02	ci right 3.764054e-02	k: 700	n:20000
KS ci ratio: 8.324667e-02	ci left: 9.563031e-02	ci right 1.039865e-01	k: 1995	n:20000
TRH   20000 perm   3 sec   (5860 perm/sec)   p_kst 9.975000e-02   p_cons 3.500000e-02   p_joint 5.575000e-02

Joint ci ratio: 8.449954e-02	ci left: 6.409812e-02	ci right 6.978610e-02	k: 2007	n:30000
Cons ci ratio: 1.164438e-01	ci left: 3.427666e-02	ci right 3.854706e-02	k: 1091	n:30000
KS ci ratio: 6.775757e-02	ci left: 9.695570e-02	ci right 1.037886e-01	k: 3010	n:30000
TRH   30000 perm   5 sec   (5576 perm/sec)   p_kst 1.003333e-01   p_cons 3.636667e-02   p_joint 6.690000e-02

Joint ci ratio: 3.942473e-02	ci left: 1.942533e-01	ci right 2.020906e-01	k: 7926	n:40000
Cons ci ratio: 1.011324e-01	ci left: 3.436636e-02	ci right 3.805137e-02	k: 1447	n:40000
KS ci ratio: 5.897158e-02	ci left: 9.653390e-02	ci right 1.024244e-01	k: 3978	n:40000
TRH   40000 perm   7 sec   (5437 perm/sec)   p_kst 9.945000e-02   p_cons 3.617500e-02   p_joint 1.981500e-01

Joint ci ratio: 3.599996e-02	ci left: 1.882179e-01	ci right 1.951379e-01	k: 9583	n:50000
Cons ci ratio: 8.943538e-02	ci left: 3.534282e-02	ci right 3.867121e-02	k: 1849	n:50000
KS ci ratio: 5.254522e-02	ci left: 9.752206e-02	ci right 1.028045e-01	k: 5007	n:50000
TRH   50000 perm   9 sec   (5318 perm/sec)   p_kst 1.001400e-01   p_cons 3.698000e-02   p_joint 1.916600e-01

Outputting figure to mutsig2_images.part000000000181/TRH.2_737_50000_0.10014_0.03698_0.19166.png
                gene_name: TRH
               theta_stop: 0.089 
                    nperm: 50000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 86 percent done.
TRIB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.680355e-02	ci left: 3.133413e-01	ci right 3.317622e-01	k: 3225	n:10000
Cons ci ratio: 7.954312e-02	ci left: 1.875697e-01	ci right 2.032082e-01	k: 1953	n:10000
KS ci ratio: 7.039249e-02	ci left: 2.282979e-01	ci right 2.450558e-01	k: 2366	n:10000
TRIB1   10000 perm   1 sec   (7060 perm/sec)   p_kst 2.366000e-01   p_cons 1.953000e-01   p_joint 3.225000e-01

Outputting figure to mutsig2_images.part000000000181/TRIB1.2_1131_10000_0.2366_0.1953_0.3225.png
                gene_name: TRIB1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 88 percent done.
TRIL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.884054e-01	ci left: 4.844389e-03	ci right 8.053335e-03	k: 63	n:10000
Cons ci ratio: 1.846669e-02	ci left: 8.107017e-01	ci right 8.259124e-01	k: 8184	n:10000
KS ci ratio: 1.959510e+00	ci left: 6.187149e-05	ci right 8.764745e-04	k: 3	n:10000
TRIL   10000 perm   2 sec   (6361 perm/sec)   p_kst 3.000000e-04   p_cons 8.184000e-01   p_joint 6.300000e-03

Joint ci ratio: 2.351824e-01	ci left: 1.208789e-02	ci right 1.535574e-02	k: 273	n:20000
Cons ci ratio: 1.364921e-02	ci left: 7.992883e-01	ci right 8.103230e-01	k: 16097	n:20000
KS ci ratio: 1.752814e+00	ci left: 5.449587e-05	ci right 5.119995e-04	k: 4	n:20000
TRIL   20000 perm   4 sec   (5642 perm/sec)   p_kst 2.000000e-04   p_cons 8.048500e-01   p_joint 1.365000e-02

Joint ci ratio: 2.525475e-01	ci left: 6.960659e-03	ci right 9.003021e-03	k: 238	n:30000
Cons ci ratio: 1.119231e-02	ci left: 7.989577e-01	ci right 8.079835e-01	k: 24105	n:30000
KS ci ratio: 1.306449e+00	ci left: 1.151345e-04	ci right 5.253717e-04	k: 8	n:30000
TRIL   30000 perm   6 sec   (5328 perm/sec)   p_kst 2.666667e-04   p_cons 8.035000e-01   p_joint 7.933333e-03

Joint ci ratio: 2.653809e-01	ci left: 4.705407e-03	ci right 6.167803e-03	k: 216	n:40000
Cons ci ratio: 9.249202e-03	ci left: 8.140573e-01	ci right 8.216465e-01	k: 32715	n:40000
KS ci ratio: 1.047468e+00	ci left: 1.730598e-04	ci right 5.556958e-04	k: 13	n:40000
TRIL   40000 perm   8 sec   (5137 perm/sec)   p_kst 3.250000e-04   p_cons 8.178750e-01   p_joint 5.400000e-03

Joint ci ratio: 2.766282e-01	ci left: 3.447092e-03	ci right 4.571698e-03	k: 199	n:50000
Cons ci ratio: 8.263131e-03	ci left: 8.148111e-01	ci right 8.215919e-01	k: 40911	n:50000
KS ci ratio: 9.237773e-01	ci left: 1.980746e-04	ci right 5.443173e-04	k: 17	n:50000
TRIL   50000 perm   10 sec   (4995 perm/sec)   p_kst 3.400000e-04   p_cons 8.182200e-01   p_joint 3.980000e-03

Joint ci ratio: 3.589863e-01	ci left: 1.628124e-03	ci right 2.354734e-03	k: 118	n:60000
Cons ci ratio: 7.571539e-03	ci left: 8.139831e-01	ci right 8.201862e-01	k: 49026	n:60000
KS ci ratio: 8.355866e-01	ci left: 2.166682e-04	ci right 5.349627e-04	k: 21	n:60000
TRIL   60000 perm   12 sec   (4875 perm/sec)   p_kst 3.500000e-04   p_cons 8.171000e-01   p_joint 1.966667e-03

Joint ci ratio: 1.817708e-01	ci left: 5.999905e-03	ci right 7.212966e-03	k: 461	n:70000
Cons ci ratio: 7.017242e-03	ci left: 8.138997e-01	ci right 8.196454e-01	k: 57175	n:70000
KS ci ratio: 7.686270e-01	ci left: 2.311369e-04	ci right 5.271685e-04	k: 25	n:70000
TRIL   70000 perm   15 sec   (4771 perm/sec)   p_kst 3.571429e-04   p_cons 8.167857e-01   p_joint 6.585714e-03

Joint ci ratio: 2.055627e-01	ci left: 4.059855e-03	ci right 5.001632e-03	k: 361	n:80000
Cons ci ratio: 6.557403e-03	ci left: 8.143909e-01	ci right 8.197611e-01	k: 65367	n:80000
KS ci ratio: 7.277892e-01	ci left: 2.325847e-04	ci right 5.058080e-04	k: 28	n:80000
TRIL   80000 perm   17 sec   (4685 perm/sec)   p_kst 3.500000e-04   p_cons 8.170875e-01   p_joint 4.512500e-03

Joint ci ratio: 1.755265e-01	ci left: 5.027257e-03	ci right 6.005030e-03	k: 495	n:90000
Cons ci ratio: 6.486370e-03	ci left: 7.996828e-01	ci right 8.048977e-01	k: 72207	n:90000
KS ci ratio: 6.822555e-01	ci left: 2.432120e-04	ci right 5.019016e-04	k: 32	n:90000
TRIL   90000 perm   20 sec   (4599 perm/sec)   p_kst 3.555556e-04   p_cons 8.023000e-01   p_joint 5.500000e-03

Joint ci ratio: 1.665361e-01	ci left: 5.051004e-03	ci right 5.978032e-03	k: 550	n:100000
Cons ci ratio: 6.156805e-03	ci left: 7.996470e-01	ci right 8.045954e-01	k: 80213	n:100000
KS ci ratio: 6.275768e-01	ci left: 2.689242e-04	ci right 5.215428e-04	k: 38	n:100000
TRIL   100000 perm   22 sec   (4476 perm/sec)   p_kst 3.800000e-04   p_cons 8.021300e-01   p_joint 5.500000e-03

Joint ci ratio: 1.661242e-01	ci left: 4.617872e-03	ci right 5.463094e-03	k: 553	n:110000
Cons ci ratio: 5.878064e-03	ci left: 7.993404e-01	ci right 8.040619e-01	k: 88188	n:110000
KS ci ratio: 5.716660e-01	ci left: 3.061774e-04	ci right 5.577570e-04	k: 46	n:110000
TRIL   110000 perm   25 sec   (4352 perm/sec)   p_kst 4.181818e-04   p_cons 8.017091e-01   p_joint 5.027273e-03

Joint ci ratio: 1.581813e-01	ci left: 4.688796e-03	ci right 5.502071e-03	k: 610	n:120000
Cons ci ratio: 5.634761e-03	ci left: 7.990477e-01	ci right 8.035711e-01	k: 96158	n:120000
KS ci ratio: 5.434861e-01	ci left: 3.164563e-04	ci right 5.587591e-04	k: 51	n:120000
TRIL   120000 perm   28 sec   (4253 perm/sec)   p_kst 4.250000e-04   p_cons 8.013167e-01   p_joint 5.083333e-03

Joint ci ratio: 1.584733e-01	ci left: 4.313277e-03	ci right 5.062926e-03	k: 608	n:130000
Cons ci ratio: 5.409800e-03	ci left: 7.993675e-01	ci right 8.037113e-01	k: 104201	n:130000
KS ci ratio: 5.383416e-01	ci left: 2.987531e-04	ci right 5.245141e-04	k: 52	n:130000
TRIL   130000 perm   31 sec   (4178 perm/sec)   p_kst 4.000000e-04   p_cons 8.015462e-01   p_joint 4.676923e-03

Joint ci ratio: 1.686776e-01	ci left: 3.518659e-03	ci right 4.173583e-03	k: 537	n:140000
Cons ci ratio: 5.221024e-03	ci left: 7.989562e-01	ci right 8.031456e-01	k: 112148	n:140000
KS ci ratio: 5.191091e-01	ci left: 3.021694e-04	ci right 5.194023e-04	k: 56	n:140000
TRIL   140000 perm   34 sec   (4107 perm/sec)   p_kst 4.000000e-04   p_cons 8.010571e-01   p_joint 3.835714e-03

Joint ci ratio: 1.644582e-01	ci left: 3.462959e-03	ci right 4.089796e-03	k: 565	n:150000
Cons ci ratio: 5.039616e-03	ci left: 7.993050e-01	ci right 8.033500e-01	k: 120200	n:150000
KS ci ratio: 5.018008e-01	ci left: 3.052556e-04	ci right 5.148497e-04	k: 60	n:150000
TRIL   150000 perm   37 sec   (4041 perm/sec)   p_kst 4.000000e-04   p_cons 8.013333e-01   p_joint 3.766667e-03

Joint ci ratio: 1.803575e-01	ci left: 2.678239e-03	ci right 3.215023e-03	k: 470	n:160000
Cons ci ratio: 4.875212e-03	ci left: 7.996562e-01	ci right 8.035704e-01	k: 128259	n:160000
KS ci ratio: 4.861159e-01	ci left: 3.080619e-04	ci right 5.107628e-04	k: 64	n:160000
TRIL   160000 perm   40 sec   (3984 perm/sec)   p_kst 4.000000e-04   p_cons 8.016188e-01   p_joint 2.937500e-03

Joint ci ratio: 1.733194e-01	ci left: 2.739963e-03	ci right 3.265448e-03	k: 509	n:170000
Cons ci ratio: 4.726430e-03	ci left: 7.999323e-01	ci right 8.037279e-01	k: 136312	n:170000
KS ci ratio: 4.684318e-01	ci left: 3.158140e-04	ci right 5.136424e-04	k: 69	n:170000
TRIL   170000 perm   43 sec   (3925 perm/sec)   p_kst 4.058824e-04   p_cons 8.018353e-01   p_joint 2.994118e-03

Joint ci ratio: 2.231709e-01	ci left: 1.520222e-03	ci right 1.907221e-03	k: 307	n:180000
Cons ci ratio: 4.596905e-03	ci left: 7.997333e-01	ci right 8.034236e-01	k: 144285	n:180000
KS ci ratio: 4.525470e-01	ci left: 3.228240e-04	ci right 5.160853e-04	k: 74	n:180000
TRIL   180000 perm   47 sec   (3832 perm/sec)   p_kst 4.111111e-04   p_cons 8.015833e-01   p_joint 1.705556e-03

Joint ci ratio: 2.175914e-01	ci left: 1.519773e-03	ci right 1.895692e-03	k: 323	n:190000
Cons ci ratio: 4.471694e-03	ci left: 7.999686e-01	ci right 8.035590e-01	k: 152336	n:190000
KS ci ratio: 4.466338e-01	ci left: 3.151670e-04	ci right 5.006344e-04	k: 76	n:190000
TRIL   190000 perm   50 sec   (3772 perm/sec)   p_kst 4.000000e-04   p_cons 8.017684e-01   p_joint 1.700000e-03

Joint ci ratio: 2.102535e-01	ci left: 1.552628e-03	ci right 1.922054e-03	k: 346	n:200000
Cons ci ratio: 4.355978e-03	ci left: 8.001965e-01	ci right 8.036947e-01	k: 160390	n:200000
KS ci ratio: 4.354663e-01	ci left: 3.171875e-04	ci right 4.978103e-04	k: 80	n:200000
TRIL   200000 perm   54 sec   (3718 perm/sec)   p_kst 4.000000e-04   p_cons 8.019500e-01   p_joint 1.730000e-03

Joint ci ratio: 2.434261e-01	ci left: 1.083295e-03	ci right 1.387884e-03	k: 258	n:210000
Cons ci ratio: 4.249565e-03	ci left: 8.003464e-01	ci right 8.037595e-01	k: 168432	n:210000
KS ci ratio: 4.226169e-01	ci left: 3.233218e-04	ci right 5.004704e-04	k: 85	n:210000
TRIL   210000 perm   57 sec   (3665 perm/sec)   p_kst 4.047619e-04   p_cons 8.020571e-01   p_joint 1.228571e-03

Joint ci ratio: 2.411140e-01	ci left: 1.055400e-03	ci right 1.348905e-03	k: 263	n:220000
Cons ci ratio: 4.146069e-03	ci left: 8.008302e-01	ci right 8.041619e-01	k: 176550	n:220000
KS ci ratio: 4.177889e-01	ci left: 3.167546e-04	ci right 4.877692e-04	k: 87	n:220000
TRIL   220000 perm   61 sec   (3615 perm/sec)   p_kst 3.954545e-04   p_cons 8.025000e-01   p_joint 1.195455e-03

Joint ci ratio: 1.617269e-01	ci left: 2.341749e-03	ci right 2.757902e-03	k: 585	n:230000
Cons ci ratio: 4.053601e-03	ci left: 8.009717e-01	ci right 8.042294e-01	k: 184599	n:230000
KS ci ratio: 4.020996e-01	ci left: 3.302799e-04	ci right 5.001171e-04	k: 94	n:230000
TRIL   230000 perm   64 sec   (3567 perm/sec)   p_kst 4.086957e-04   p_cons 8.026043e-01   p_joint 2.543478e-03

Joint ci ratio: 1.585140e-01	ci left: 2.340169e-03	ci right 2.746993e-03	k: 609	n:240000
Cons ci ratio: 3.969559e-03	ci left: 8.009015e-01	ci right 8.040912e-01	k: 192600	n:240000
KS ci ratio: 4.000025e-01	ci left: 3.202642e-04	ci right 4.838644e-04	k: 95	n:240000
TRIL   240000 perm   68 sec   (3519 perm/sec)   p_kst 3.958333e-04   p_cons 8.025000e-01   p_joint 2.537500e-03

Joint ci ratio: 1.556083e-01	ci left: 2.334946e-03	ci right 2.732727e-03	k: 632	n:250000
Cons ci ratio: 3.889062e-03	ci left: 8.009580e-01	ci right 8.040830e-01	k: 200631	n:250000
KS ci ratio: 3.880579e-01	ci left: 3.290763e-04	ci right 4.908753e-04	k: 101	n:250000
TRIL   250000 perm   72 sec   (3471 perm/sec)   p_kst 4.040000e-04   p_cons 8.025240e-01   p_joint 2.528000e-03

Joint ci ratio: 1.702610e-01	ci left: 1.861377e-03	ci right 2.211410e-03	k: 528	n:260000
Cons ci ratio: 3.813134e-03	ci left: 8.010223e-01	ci right 8.040863e-01	k: 208665	n:260000
KS ci ratio: 3.843100e-01	ci left: 3.233648e-04	ci right 4.804315e-04	k: 103	n:260000
TRIL   260000 perm   76 sec   (3427 perm/sec)   p_kst 3.961538e-04   p_cons 8.025577e-01   p_joint 2.030769e-03

Joint ci ratio: 1.671310e-01	ci left: 1.863384e-03	ci right 2.206705e-03	k: 548	n:270000
Cons ci ratio: 3.740436e-03	ci left: 8.011715e-01	ci right 8.041775e-01	k: 216723	n:270000
KS ci ratio: 3.736805e-01	ci left: 3.314941e-04	ci right 4.869665e-04	k: 109	n:270000
TRIL   270000 perm   80 sec   (3386 perm/sec)   p_kst 4.037037e-04   p_cons 8.026778e-01   p_joint 2.029630e-03

Joint ci ratio: 1.648952e-01	ci left: 1.848179e-03	ci right 2.183691e-03	k: 563	n:280000
Cons ci ratio: 3.673109e-03	ci left: 8.011924e-01	ci right 8.041442e-01	k: 224748	n:280000
KS ci ratio: 3.686875e-01	ci left: 3.293698e-04	ci right 4.812844e-04	k: 112	n:280000
TRIL   280000 perm   84 sec   (3346 perm/sec)   p_kst 4.000000e-04   p_cons 8.026714e-01   p_joint 2.010714e-03

Joint ci ratio: 1.633129e-01	ci left: 1.820820e-03	ci right 2.147881e-03	k: 574	n:290000
Cons ci ratio: 3.609959e-03	ci left: 8.011535e-01	ci right 8.040543e-01	k: 232756	n:290000
KS ci ratio: 3.638894e-01	ci left: 3.274049e-04	ci right 4.759814e-04	k: 115	n:290000
TRIL   290000 perm   88 sec   (3307 perm/sec)   p_kst 3.965517e-04   p_cons 8.026069e-01   p_joint 1.979310e-03

Joint ci ratio: 1.609517e-01	ci left: 1.814493e-03	ci right 2.135250e-03	k: 591	n:300000
Cons ci ratio: 3.550592e-03	ci left: 8.010608e-01	ci right 8.039134e-01	k: 240747	n:300000
KS ci ratio: 3.623328e-01	ci left: 3.195203e-04	ci right 4.637520e-04	k: 116	n:300000
TRIL   300000 perm   92 sec   (3266 perm/sec)   p_kst 3.866667e-04   p_cons 8.024900e-01   p_joint 1.970000e-03

Joint ci ratio: 1.318051e-01	ci left: 2.657589e-03	ci right 3.035671e-03	k: 881	n:310000
Cons ci ratio: 3.491429e-03	ci left: 8.012138e-01	ci right 8.040193e-01	k: 248812	n:310000
KS ci ratio: 3.533838e-01	ci left: 3.268285e-04	ci right 4.698794e-04	k: 122	n:310000
TRIL   310000 perm   96 sec   (3225 perm/sec)   p_kst 3.935484e-04   p_cons 8.026194e-01   p_joint 2.841935e-03

Joint ci ratio: 1.296189e-01	ci left: 2.665225e-03	ci right 3.037619e-03	k: 911	n:320000
Cons ci ratio: 3.436822e-03	ci left: 8.012009e-01	ci right 8.039623e-01	k: 256827	n:320000
KS ci ratio: 3.505464e-01	ci left: 3.223125e-04	ci right 4.619963e-04	k: 124	n:320000
TRIL   320000 perm   100 sec   (3185 perm/sec)   p_kst 3.875000e-04   p_cons 8.025844e-01   p_joint 2.846875e-03

Joint ci ratio: 1.280845e-01	ci left: 2.648977e-03	ci right 3.014386e-03	k: 933	n:330000
Cons ci ratio: 3.384732e-03	ci left: 8.011861e-01	ci right 8.039055e-01	k: 264841	n:330000
KS ci ratio: 3.477763e-01	ci left: 3.180744e-04	ci right 4.545866e-04	k: 126	n:330000
TRIL   330000 perm   105 sec   (3145 perm/sec)   p_kst 3.818182e-04   p_cons 8.025485e-01   p_joint 2.827273e-03

Joint ci ratio: 1.264046e-01	ci left: 2.642254e-03	ci right 3.001597e-03	k: 958	n:340000
Cons ci ratio: 3.334104e-03	ci left: 8.012521e-01	ci right 8.039309e-01	k: 272882	n:340000
KS ci ratio: 3.411255e-01	ci left: 3.221533e-04	ci right 4.571893e-04	k: 131	n:340000
TRIL   340000 perm   109 sec   (3109 perm/sec)   p_kst 3.852941e-04   p_cons 8.025941e-01   p_joint 2.817647e-03

Joint ci ratio: 1.242834e-01	ci left: 2.658092e-03	ci right 3.013076e-03	k: 991	n:350000
Cons ci ratio: 3.285238e-03	ci left: 8.013576e-01	ci right 8.039974e-01	k: 280938	n:350000
KS ci ratio: 3.373143e-01	ci left: 3.207902e-04	ci right 4.534257e-04	k: 134	n:350000
TRIL   350000 perm   114 sec   (3078 perm/sec)   p_kst 3.828571e-04   p_cons 8.026800e-01   p_joint 2.831429e-03

Joint ci ratio: 1.249213e-01	ci left: 2.557335e-03	ci right 2.900747e-03	k: 981	n:360000
Cons ci ratio: 3.237465e-03	ci left: 8.015549e-01	ci right 8.041569e-01	k: 289029	n:360000
KS ci ratio: 3.288938e-01	ci left: 3.296982e-04	ci right 4.618947e-04	k: 141	n:360000
TRIL   360000 perm   118 sec   (3046 perm/sec)   p_kst 3.916667e-04   p_cons 8.028583e-01   p_joint 2.725000e-03

Joint ci ratio: 1.237315e-01	ci left: 2.537971e-03	ci right 2.875298e-03	k: 1000	n:370000
Cons ci ratio: 3.192259e-03	ci left: 8.016876e-01	ci right 8.042536e-01	k: 297100	n:370000
KS ci ratio: 3.243571e-01	ci left: 3.307120e-04	ci right 4.611051e-04	k: 145	n:370000
TRIL   370000 perm   123 sec   (3010 perm/sec)   p_kst 3.918919e-04   p_cons 8.029730e-01   p_joint 2.702703e-03

Joint ci ratio: 1.828592e-01	ci left: 1.097452e-03	ci right 1.320792e-03	k: 458	n:380000
Cons ci ratio: 3.149968e-03	ci left: 8.017054e-01	ci right 8.042373e-01	k: 305130	n:380000
KS ci ratio: 3.189413e-01	ci left: 3.341049e-04	ci right 4.631872e-04	k: 150	n:380000
TRIL   380000 perm   128 sec   (2979 perm/sec)   p_kst 3.947368e-04   p_cons 8.029737e-01   p_joint 1.205263e-03

Joint ci ratio: 1.797521e-01	ci left: 1.108477e-03	ci right 1.329810e-03	k: 474	n:390000
Cons ci ratio: 3.111003e-03	ci left: 8.015503e-01	ci right 8.040503e-01	k: 313093	n:390000
KS ci ratio: 3.147990e-01	ci left: 3.349789e-04	ci right 4.623800e-04	k: 154	n:390000
TRIL   390000 perm   132 sec   (2948 perm/sec)   p_kst 3.948718e-04   p_cons 8.028026e-01   p_joint 1.215385e-03

Joint ci ratio: 1.149777e-01	ci left: 2.730861e-03	ci right 3.066405e-03	k: 1158	n:400000
Cons ci ratio: 3.070488e-03	ci left: 8.017089e-01	ci right 8.041767e-01	k: 321178	n:400000
KS ci ratio: 3.098408e-01	ci left: 3.381250e-04	ci right 4.642969e-04	k: 159	n:400000
TRIL   400000 perm   137 sec   (2917 perm/sec)   p_kst 3.975000e-04   p_cons 8.029450e-01   p_joint 2.895000e-03

Joint ci ratio: 1.136137e-01	ci left: 2.730594e-03	ci right 3.061859e-03	k: 1186	n:410000
Cons ci ratio: 3.032775e-03	ci left: 8.017279e-01	ci right 8.041654e-01	k: 329209	n:410000
KS ci ratio: 3.069767e-01	ci left: 3.366288e-04	ci right 4.608542e-04	k: 162	n:410000
TRIL   410000 perm   142 sec   (2884 perm/sec)   p_kst 3.951220e-04   p_cons 8.029488e-01   p_joint 2.892683e-03

Joint ci ratio: 1.688947e-01	ci left: 1.172765e-03	ci right 1.391352e-03	k: 537	n:420000
Cons ci ratio: 2.995788e-03	ci left: 8.018130e-01	ci right 8.042210e-01	k: 337268	n:420000
KS ci ratio: 3.041905e-01	ci left: 3.352091e-04	ci right 4.575704e-04	k: 165	n:420000
TRIL   420000 perm   147 sec   (2850 perm/sec)   p_kst 3.928571e-04   p_cons 8.030190e-01   p_joint 1.278571e-03

Joint ci ratio: 1.662871e-01	ci left: 1.183368e-03	ci right 1.400185e-03	k: 554	n:430000
Cons ci ratio: 2.959925e-03	ci left: 8.019152e-01	ci right 8.042946e-01	k: 345336	n:430000
KS ci ratio: 3.014788e-01	ci left: 3.338602e-04	ci right 4.544345e-04	k: 168	n:430000
TRIL   430000 perm   153 sec   (2817 perm/sec)   p_kst 3.906977e-04   p_cons 8.031070e-01   p_joint 1.288372e-03

Joint ci ratio: 1.643732e-01	ci left: 1.184797e-03	ci right 1.399130e-03	k: 567	n:440000
Cons ci ratio: 2.925299e-03	ci left: 8.020153e-01	ci right 8.043671e-01	k: 353405	n:440000
KS ci ratio: 2.979731e-01	ci left: 3.346799e-04	ci right 4.538789e-04	k: 172	n:440000
TRIL   440000 perm   158 sec   (2781 perm/sec)   p_kst 3.909091e-04   p_cons 8.031932e-01   p_joint 1.288636e-03

Joint ci ratio: 1.626640e-01	ci left: 1.184043e-03	ci right 1.395795e-03	k: 579	n:450000
Cons ci ratio: 2.892103e-03	ci left: 8.020843e-01	ci right 8.044096e-01	k: 361462	n:450000
KS ci ratio: 2.937580e-01	ci left: 3.375292e-04	ci right 4.557259e-04	k: 177	n:450000
TRIL   450000 perm   164 sec   (2751 perm/sec)   p_kst 3.933333e-04   p_cons 8.032489e-01   p_joint 1.286667e-03

Joint ci ratio: 1.580925e-01	ci left: 1.229253e-03	ci right 1.442325e-03	k: 613	n:460000
Cons ci ratio: 2.860327e-03	ci left: 8.021156e-01	ci right 8.044153e-01	k: 369503	n:460000
KS ci ratio: 2.881459e-01	ci left: 3.442988e-04	ci right 4.621433e-04	k: 184	n:460000
TRIL   460000 perm   169 sec   (2720 perm/sec)   p_kst 4.000000e-04   p_cons 8.032674e-01   p_joint 1.332609e-03

Joint ci ratio: 1.583532e-01	ci left: 1.199010e-03	ci right 1.407216e-03	k: 611	n:470000
Cons ci ratio: 2.828547e-03	ci left: 8.022609e-01	ci right 8.045354e-01	k: 377598	n:470000
KS ci ratio: 2.835833e-01	ci left: 3.488242e-04	ci right 4.659890e-04	k: 190	n:470000
TRIL   470000 perm   174 sec   (2695 perm/sec)   p_kst 4.042553e-04   p_cons 8.034000e-01   p_joint 1.300000e-03

Joint ci ratio: 1.208413e-01	ci left: 2.055283e-03	ci right 2.321616e-03	k: 1049	n:480000
Cons ci ratio: 2.674251e-03	ci left: 8.163020e-01	ci right 8.184900e-01	k: 392351	n:480000
KS ci ratio: 2.806597e-01	ci left: 3.493009e-04	ci right 4.652023e-04	k: 194	n:480000
TRIL   480000 perm   180 sec   (2670 perm/sec)   p_kst 4.041667e-04   p_cons 8.173979e-01   p_joint 2.185417e-03

Joint ci ratio: 1.595363e-01	ci left: 1.132431e-03	ci right 1.330685e-03	k: 602	n:490000
Cons ci ratio: 2.646622e-03	ci left: 8.163358e-01	ci right 8.185012e-01	k: 400536	n:490000
KS ci ratio: 2.778247e-01	ci left: 3.497640e-04	ci right 4.644417e-04	k: 198	n:490000
TRIL   490000 perm   185 sec   (2644 perm/sec)   p_kst 4.040816e-04   p_cons 8.174204e-01   p_joint 1.228571e-03

Joint ci ratio: 1.582301e-01	ci left: 1.128987e-03	ci right 1.324866e-03	k: 612	n:500000
Cons ci ratio: 2.620377e-03	ci left: 8.163063e-01	ci right 8.184501e-01	k: 408690	n:500000
KS ci ratio: 2.743986e-01	ci left: 3.520765e-04	ci right 4.658434e-04	k: 203	n:500000
TRIL   500000 perm   191 sec   (2617 perm/sec)   p_kst 4.060000e-04   p_cons 8.173800e-01   p_joint 1.224000e-03

Joint ci ratio: 1.652639e-01	ci left: 1.010891e-03	ci right 1.194853e-03	k: 561	n:510000
Cons ci ratio: 2.593619e-03	ci left: 8.164253e-01	ci right 8.185475e-01	k: 416919	n:510000
KS ci ratio: 2.698078e-01	ci left: 3.579624e-04	ci right 4.713685e-04	k: 210	n:510000
TRIL   510000 perm   197 sec   (2593 perm/sec)   p_kst 4.117647e-04   p_cons 8.174882e-01   p_joint 1.100000e-03

Joint ci ratio: 1.610191e-01	ci left: 1.046789e-03	ci right 1.231918e-03	k: 591	n:520000
Cons ci ratio: 2.568922e-03	ci left: 8.163935e-01	ci right 8.184953e-01	k: 425072	n:520000
KS ci ratio: 2.660512e-01	ci left: 3.618421e-04	ci right 4.746153e-04	k: 216	n:520000
TRIL   520000 perm   202 sec   (2570 perm/sec)   p_kst 4.153846e-04   p_cons 8.174462e-01   p_joint 1.136538e-03

Joint ci ratio: 1.591479e-01	ci left: 1.052396e-03	ci right 1.236146e-03	k: 605	n:530000
Cons ci ratio: 2.543694e-03	ci left: 8.165066e-01	ci right 8.185880e-01	k: 433301	n:530000
KS ci ratio: 2.648341e-01	ci left: 3.585373e-04	ci right 4.696845e-04	k: 218	n:530000
TRIL   530000 perm   208 sec   (2547 perm/sec)   p_kst 4.113208e-04   p_cons 8.175491e-01   p_joint 1.141509e-03

Joint ci ratio: 1.565837e-01	ci left: 1.068481e-03	ci right 1.251753e-03	k: 625	n:540000
Cons ci ratio: 2.519225e-03	ci left: 8.166119e-01	ci right 8.186736e-01	k: 441528	n:540000
KS ci ratio: 2.612786e-01	ci left: 3.622764e-04	ci right 4.728286e-04	k: 224	n:540000
TRIL   540000 perm   214 sec   (2524 perm/sec)   p_kst 4.148148e-04   p_cons 8.176444e-01   p_joint 1.157407e-03

Joint ci ratio: 1.549826e-01	ci left: 1.071770e-03	ci right 1.253551e-03	k: 638	n:550000
Cons ci ratio: 2.496240e-03	ci left: 8.166187e-01	ci right 8.186615e-01	k: 449703	n:550000
KS ci ratio: 2.601256e-01	ci left: 3.590882e-04	ci right 4.681053e-04	k: 226	n:550000
TRIL   550000 perm   220 sec   (2502 perm/sec)   p_kst 4.109091e-04   p_cons 8.176418e-01   p_joint 1.160000e-03

Joint ci ratio: 1.539029e-01	ci left: 1.068081e-03	ci right 1.247858e-03	k: 647	n:560000
Cons ci ratio: 2.474406e-03	ci left: 8.165610e-01	ci right 8.185857e-01	k: 457842	n:560000
KS ci ratio: 2.584238e-01	ci left: 3.576849e-04	ci right 4.654509e-04	k: 229	n:560000
TRIL   560000 perm   226 sec   (2479 perm/sec)   p_kst 4.089286e-04   p_cons 8.175750e-01   p_joint 1.155357e-03

Joint ci ratio: 1.521515e-01	ci left: 1.074651e-03	ci right 1.253288e-03	k: 662	n:570000
Cons ci ratio: 2.452918e-03	ci left: 8.165317e-01	ci right 8.185388e-01	k: 465996	n:570000
KS ci ratio: 2.562056e-01	ci left: 3.579747e-04	ci right 4.647542e-04	k: 233	n:570000
TRIL   570000 perm   232 sec   (2456 perm/sec)   p_kst 4.087719e-04   p_cons 8.175368e-01   p_joint 1.161404e-03

Joint ci ratio: 1.507929e-01	ci left: 1.076028e-03	ci right 1.253153e-03	k: 674	n:580000
Cons ci ratio: 2.431629e-03	ci left: 8.165467e-01	ci right 8.185363e-01	k: 474175	n:580000
KS ci ratio: 2.551181e-01	ci left: 3.550300e-04	ci right 4.604101e-04	k: 235	n:580000
TRIL   580000 perm   238 sec   (2432 perm/sec)   p_kst 4.051724e-04   p_cons 8.175431e-01   p_joint 1.162069e-03

Joint ci ratio: 1.497979e-01	ci left: 1.072471e-03	ci right 1.247741e-03	k: 683	n:590000
Cons ci ratio: 2.411118e-03	ci left: 8.165324e-01	ci right 8.185052e-01	k: 482337	n:590000
KS ci ratio: 2.519352e-01	ci left: 3.585360e-04	ci right 4.634207e-04	k: 241	n:590000
TRIL   590000 perm   245 sec   (2410 perm/sec)   p_kst 4.084746e-04   p_cons 8.175203e-01   p_joint 1.157627e-03

Joint ci ratio: 1.487150e-01	ci left: 1.070641e-03	ci right 1.244234e-03	k: 693	n:600000
Cons ci ratio: 2.392439e-03	ci left: 8.163533e-01	ci right 8.183103e-01	k: 490400	n:600000
KS ci ratio: 2.493721e-01	ci left: 3.603703e-04	ci right 4.645527e-04	k: 246	n:600000
TRIL   600000 perm   251 sec   (2388 perm/sec)   p_kst 4.100000e-04   p_cons 8.173333e-01   p_joint 1.155000e-03

Joint ci ratio: 1.479711e-01	ci left: 1.064138e-03	ci right 1.235738e-03	k: 700	n:610000
Cons ci ratio: 2.373469e-03	ci left: 8.162705e-01	ci right 8.182118e-01	k: 498518	n:610000
KS ci ratio: 2.478716e-01	ci left: 3.590742e-04	ci right 4.621609e-04	k: 249	n:610000
TRIL   610000 perm   258 sec   (2365 perm/sec)   p_kst 4.081967e-04   p_cons 8.172426e-01   p_joint 1.147541e-03

Joint ci ratio: 1.496926e-01	ci left: 1.022128e-03	ci right 1.189042e-03	k: 684	n:620000
Cons ci ratio: 2.353722e-03	ci left: 8.163455e-01	ci right 8.182708e-01	k: 506732	n:620000
KS ci ratio: 2.473779e-01	ci left: 3.547954e-04	ci right 4.564196e-04	k: 250	n:620000
TRIL   620000 perm   265 sec   (2343 perm/sec)   p_kst 4.032258e-04   p_cons 8.173097e-01   p_joint 1.103226e-03

Joint ci ratio: 1.485050e-01	ci left: 1.022712e-03	ci right 1.188279e-03	k: 695	n:630000
Cons ci ratio: 2.335601e-03	ci left: 8.162720e-01	ci right 8.181822e-01	k: 514854	n:630000
KS ci ratio: 2.463986e-01	ci left: 3.521419e-04	ci right 4.525456e-04	k: 252	n:630000
TRIL   630000 perm   272 sec   (2319 perm/sec)   p_kst 4.000000e-04   p_cons 8.172286e-01   p_joint 1.103175e-03

Joint ci ratio: 1.485063e-01	ci left: 1.006732e-03	ci right 1.169713e-03	k: 695	n:640000
Cons ci ratio: 2.317625e-03	ci left: 8.162352e-01	ci right 8.181307e-01	k: 522998	n:640000
KS ci ratio: 2.444736e-01	ci left: 3.525053e-04	ci right 4.521082e-04	k: 256	n:640000
TRIL   640000 perm   278 sec   (2301 perm/sec)   p_kst 4.000000e-04   p_cons 8.171844e-01   p_joint 1.085938e-03

Joint ci ratio: 1.470345e-01	ci left: 1.011986e-03	ci right 1.174052e-03	k: 709	n:650000
Cons ci ratio: 2.299572e-03	ci left: 8.162628e-01	ci right 8.181436e-01	k: 531183	n:650000
KS ci ratio: 2.407544e-01	ci left: 3.586418e-04	ci right 4.582069e-04	k: 264	n:650000
TRIL   650000 perm   285 sec   (2282 perm/sec)   p_kst 4.061538e-04   p_cons 8.172046e-01   p_joint 1.090769e-03

Joint ci ratio: 1.459086e-01	ci left: 1.012709e-03	ci right 1.173540e-03	k: 720	n:660000
Cons ci ratio: 2.282594e-03	ci left: 8.162032e-01	ci right 8.180698e-01	k: 539311	n:660000
KS ci ratio: 2.389577e-01	ci left: 3.589043e-04	ci right 4.576885e-04	k: 268	n:660000
TRIL   660000 perm   292 sec   (2260 perm/sec)   p_kst 4.060606e-04   p_cons 8.171379e-01   p_joint 1.090909e-03

Joint ci ratio: 1.447092e-01	ci left: 1.014853e-03	ci right 1.174586e-03	k: 732	n:670000
Cons ci ratio: 2.265613e-03	ci left: 8.161946e-01	ci right 8.180474e-01	k: 547472	n:670000
KS ci ratio: 2.372007e-01	ci left: 3.591615e-04	ci right 4.571830e-04	k: 272	n:670000
TRIL   670000 perm   299 sec   (2242 perm/sec)   p_kst 4.059701e-04   p_cons 8.171224e-01   p_joint 1.092537e-03

Joint ci ratio: 1.437322e-01	ci left: 1.014104e-03	ci right 1.172549e-03	k: 742	n:680000
Cons ci ratio: 2.249504e-03	ci left: 8.161201e-01	ci right 8.179595e-01	k: 555588	n:680000
KS ci ratio: 2.359082e-01	ci left: 3.580300e-04	ci right 4.551325e-04	k: 275	n:680000
TRIL   680000 perm   306 sec   (2225 perm/sec)   p_kst 4.044118e-04   p_cons 8.170412e-01   p_joint 1.091176e-03

Joint ci ratio: 1.195213e-01	ci left: 1.463472e-03	ci right 1.650897e-03	k: 1073	n:690000
Cons ci ratio: 2.233700e-03	ci left: 8.160522e-01	ci right 8.178785e-01	k: 563707	n:690000
KS ci ratio: 2.350584e-01	ci left: 3.555687e-04	ci right 4.516057e-04	k: 277	n:690000
TRIL   690000 perm   313 sec   (2208 perm/sec)   p_kst 4.014493e-04   p_cons 8.169667e-01   p_joint 1.555072e-03

Joint ci ratio: 1.123622e-01	ci left: 1.638166e-03	ci right 1.834566e-03	k: 1214	n:700000
Cons ci ratio: 2.218277e-03	ci left: 8.159791e-01	ci right 8.177926e-01	k: 571821	n:700000
KS ci ratio: 2.342178e-01	ci left: 3.531783e-04	ci right 4.481790e-04	k: 279	n:700000
TRIL   700000 perm   320 sec   (2190 perm/sec)   p_kst 3.985714e-04   p_cons 8.168871e-01   p_joint 1.734286e-03

Joint ci ratio: 1.136834e-01	ci left: 1.576769e-03	ci right 1.768179e-03	k: 1186	n:710000
Cons ci ratio: 2.202308e-03	ci left: 8.160252e-01	ci right 8.178257e-01	k: 580018	n:710000
KS ci ratio: 2.325625e-01	ci left: 3.535083e-04	ci right 4.478293e-04	k: 283	n:710000
TRIL   710000 perm   327 sec   (2174 perm/sec)   p_kst 3.985915e-04   p_cons 8.169268e-01   p_joint 1.670423e-03

Joint ci ratio: 1.128310e-01	ci left: 1.579161e-03	ci right 1.769329e-03	k: 1204	n:720000
Cons ci ratio: 2.187208e-03	ci left: 8.159977e-01	ci right 8.177858e-01	k: 588163	n:720000
KS ci ratio: 2.317483e-01	ci left: 3.512147e-04	ci right 4.445485e-04	k: 285	n:720000
TRIL   720000 perm   334 sec   (2157 perm/sec)   p_kst 3.958333e-04   p_cons 8.168931e-01   p_joint 1.672222e-03

Joint ci ratio: 1.096860e-01	ci left: 1.650755e-03	ci right 1.843645e-03	k: 1274	n:730000
Cons ci ratio: 2.172463e-03	ci left: 8.159642e-01	ci right 8.177401e-01	k: 596303	n:730000
KS ci ratio: 2.297485e-01	ci left: 3.528569e-04	ci right 4.457033e-04	k: 290	n:730000
TRIL   730000 perm   341 sec   (2139 perm/sec)   p_kst 3.972603e-04   p_cons 8.168534e-01   p_joint 1.745205e-03

Joint ci ratio: 1.089620e-01	ci left: 1.650792e-03	ci right 1.842332e-03	k: 1291	n:740000
Cons ci ratio: 2.157223e-03	ci left: 8.160413e-01	ci right 8.178049e-01	k: 604524	n:740000
KS ci ratio: 2.281856e-01	ci left: 3.531840e-04	ci right 4.453952e-04	k: 294	n:740000
TRIL   740000 perm   349 sec   (2123 perm/sec)   p_kst 3.972973e-04   p_cons 8.169243e-01   p_joint 1.744595e-03

Joint ci ratio: 1.051588e-01	ci left: 1.752062e-03	ci right 1.947818e-03	k: 1386	n:750000
Cons ci ratio: 2.142451e-03	ci left: 8.160950e-01	ci right 8.178466e-01	k: 612729	n:750000
KS ci ratio: 2.247817e-01	ci left: 3.597943e-04	ci right 4.521361e-04	k: 303	n:750000
TRIL   750000 perm   356 sec   (2106 perm/sec)   p_kst 4.040000e-04   p_cons 8.169720e-01   p_joint 1.848000e-03

Joint ci ratio: 9.419322e-02	ci left: 2.166562e-03	ci right 2.381997e-03	k: 1727	n:760000
Cons ci ratio: 2.128513e-03	ci left: 8.160721e-01	ci right 8.178123e-01	k: 620877	n:760000
KS ci ratio: 2.233173e-01	ci left: 3.600279e-04	ci right 4.517449e-04	k: 307	n:760000
TRIL   760000 perm   364 sec   (2090 perm/sec)   p_kst 4.039474e-04   p_cons 8.169434e-01   p_joint 2.272368e-03

Joint ci ratio: 9.343891e-02	ci left: 2.173935e-03	ci right 2.388278e-03	k: 1755	n:770000
Cons ci ratio: 2.114788e-03	ci left: 8.160577e-01	ci right 8.177866e-01	k: 629031	n:770000
KS ci ratio: 2.208217e-01	ci left: 3.639376e-04	ci right 4.554738e-04	k: 314	n:770000
TRIL   770000 perm   371 sec   (2074 perm/sec)   p_kst 4.077922e-04   p_cons 8.169234e-01   p_joint 2.279221e-03

Joint ci ratio: 9.288526e-02	ci left: 2.172360e-03	ci right 2.385209e-03	k: 1776	n:780000
Cons ci ratio: 2.101685e-03	ci left: 8.159924e-01	ci right 8.177104e-01	k: 637145	n:780000
KS ci ratio: 2.184078e-01	ci left: 3.677525e-04	ci right 4.591015e-04	k: 321	n:780000
TRIL   780000 perm   379 sec   (2055 perm/sec)   p_kst 4.115385e-04   p_cons 8.168526e-01   p_joint 2.276923e-03

Joint ci ratio: 9.213612e-02	ci left: 2.180722e-03	ci right 2.392574e-03	k: 1805	n:790000
Cons ci ratio: 2.087595e-03	ci left: 8.161050e-01	ci right 8.178117e-01	k: 645398	n:790000
KS ci ratio: 2.167315e-01	ci left: 3.690817e-04	ci right 4.599635e-04	k: 326	n:790000
TRIL   790000 perm   387 sec   (2039 perm/sec)   p_kst 4.126582e-04   p_cons 8.169595e-01   p_joint 2.284810e-03

Joint ci ratio: 9.188284e-02	ci left: 2.165674e-03	ci right 2.375456e-03	k: 1815	n:800000
Cons ci ratio: 2.074069e-03	ci left: 8.161735e-01	ci right 8.178692e-01	k: 653618	n:800000
KS ci ratio: 2.157443e-01	ci left: 3.680151e-04	ci right 4.581667e-04	k: 329	n:800000
TRIL   800000 perm   395 sec   (2024 perm/sec)   p_kst 4.112500e-04   p_cons 8.170225e-01   p_joint 2.268750e-03

Joint ci ratio: 9.069066e-02	ci left: 2.196846e-03	ci right 2.406739e-03	k: 1863	n:810000
Cons ci ratio: 2.061356e-03	ci left: 8.161599e-01	ci right 8.178452e-01	k: 661773	n:810000
KS ci ratio: 2.144485e-01	ci left: 3.681440e-04	ci right 4.577143e-04	k: 333	n:810000
TRIL   810000 perm   403 sec   (2010 perm/sec)   p_kst 4.111111e-04   p_cons 8.170037e-01   p_joint 2.300000e-03

Joint ci ratio: 9.035249e-02	ci left: 2.186741e-03	ci right 2.394849e-03	k: 1877	n:820000
Cons ci ratio: 2.048364e-03	ci left: 8.162212e-01	ci right 8.178960e-01	k: 669989	n:820000
KS ci ratio: 2.131758e-01	ci left: 3.682712e-04	ci right 4.572712e-04	k: 337	n:820000
TRIL   820000 perm   411 sec   (1995 perm/sec)   p_kst 4.109756e-04   p_cons 8.170598e-01   p_joint 2.289024e-03

Joint ci ratio: 9.206461e-02	ci left: 2.079153e-03	ci right 2.280973e-03	k: 1808	n:830000
Cons ci ratio: 2.036329e-03	ci left: 8.161761e-01	ci right 8.178410e-01	k: 678118	n:830000
KS ci ratio: 2.113083e-01	ci left: 3.706790e-04	ci right 4.593745e-04	k: 343	n:830000
TRIL   830000 perm   419 sec   (1981 perm/sec)   p_kst 4.132530e-04   p_cons 8.170096e-01   p_joint 2.178313e-03

Joint ci ratio: 9.148481e-02	ci left: 2.081154e-03	ci right 2.281828e-03	k: 1831	n:840000
Cons ci ratio: 2.024583e-03	ci left: 8.161201e-01	ci right 8.177753e-01	k: 686237	n:840000
KS ci ratio: 2.106970e-01	ci left: 3.685212e-04	ci right 4.564124e-04	k: 345	n:840000
TRIL   840000 perm   427 sec   (1967 perm/sec)   p_kst 4.107143e-04   p_cons 8.169488e-01   p_joint 2.179762e-03

Joint ci ratio: 9.143598e-02	ci left: 2.058968e-03	ci right 2.257391e-03	k: 1833	n:850000
Cons ci ratio: 2.012682e-03	ci left: 8.161186e-01	ci right 8.177640e-01	k: 694401	n:850000
KS ci ratio: 2.091908e-01	ci left: 3.697588e-04	ci right 4.572340e-04	k: 350	n:850000
TRIL   850000 perm   435 sec   (1953 perm/sec)   p_kst 4.117647e-04   p_cons 8.169424e-01   p_joint 2.156471e-03

Joint ci ratio: 9.072114e-02	ci left: 2.067980e-03	ci right 2.265630e-03	k: 1862	n:860000
Cons ci ratio: 2.000475e-03	ci left: 8.161940e-01	ci right 8.178295e-01	k: 702631	n:860000
KS ci ratio: 2.074252e-01	ci left: 3.720722e-04	ci right 4.592574e-04	k: 356	n:860000
TRIL   860000 perm   443 sec   (1940 perm/sec)   p_kst 4.139535e-04   p_cons 8.170128e-01   p_joint 2.165116e-03

Joint ci ratio: 9.016619e-02	ci left: 2.070049e-03	ci right 2.266623e-03	k: 1885	n:870000
Cons ci ratio: 1.989313e-03	ci left: 8.161433e-01	ci right 8.177696e-01	k: 710753	n:870000
KS ci ratio: 2.059876e-01	ci left: 3.732451e-04	ci right 4.600227e-04	k: 361	n:870000
TRIL   870000 perm   452 sec   (1926 perm/sec)   p_kst 4.149425e-04   p_cons 8.169575e-01   p_joint 2.166667e-03

Joint ci ratio: 8.955082e-02	ci left: 2.075407e-03	ci right 2.271075e-03	k: 1911	n:880000
Cons ci ratio: 1.978530e-03	ci left: 8.160642e-01	ci right 8.176815e-01	k: 718849	n:880000
KS ci ratio: 2.031995e-01	ci left: 3.797854e-04	ci right 4.667400e-04	k: 371	n:880000
TRIL   880000 perm   460 sec   (1913 perm/sec)   p_kst 4.215909e-04   p_cons 8.168739e-01   p_joint 2.171591e-03

Joint ci ratio: 8.906309e-02	ci left: 2.075156e-03	ci right 2.269679e-03	k: 1932	n:890000
Cons ci ratio: 1.966990e-03	ci left: 8.161287e-01	ci right 8.177367e-01	k: 727071	n:890000
KS ci ratio: 2.018474e-01	ci left: 3.808512e-04	ci right 4.673982e-04	k: 376	n:890000
TRIL   890000 perm   469 sec   (1900 perm/sec)   p_kst 4.224719e-04   p_cons 8.169337e-01   p_joint 2.170787e-03

Joint ci ratio: 8.858324e-02	ci left: 2.074914e-03	ci right 2.268312e-03	k: 1953	n:900000
Cons ci ratio: 1.955962e-03	ci left: 8.161439e-01	ci right 8.177429e-01	k: 735250	n:900000
KS ci ratio: 2.010492e-01	ci left: 3.797847e-04	ci right 4.657062e-04	k: 379	n:900000
TRIL   900000 perm   477 sec   (1885 perm/sec)   p_kst 4.211111e-04   p_cons 8.169444e-01   p_joint 2.170000e-03

Joint ci ratio: 8.826797e-02	ci left: 2.067157e-03	ci right 2.259111e-03	k: 1967	n:910000
Cons ci ratio: 1.945409e-03	ci left: 8.161137e-01	ci right 8.177040e-01	k: 743388	n:910000
KS ci ratio: 2.005224e-01	ci left: 3.776985e-04	ci right 4.628967e-04	k: 381	n:910000
TRIL   910000 perm   486 sec   (1872 perm/sec)   p_kst 4.186813e-04   p_cons 8.169099e-01   p_joint 2.161538e-03

Joint ci ratio: 8.795604e-02	ci left: 2.059569e-03	ci right 2.250108e-03	k: 1981	n:920000
Cons ci ratio: 1.935174e-03	ci left: 8.160614e-01	ci right 8.176432e-01	k: 751505	n:920000
KS ci ratio: 1.997398e-01	ci left: 3.766906e-04	ci right 4.612893e-04	k: 384	n:920000
TRIL   920000 perm   495 sec   (1858 perm/sec)   p_kst 4.173913e-04   p_cons 8.168533e-01   p_joint 2.153261e-03

Joint ci ratio: 8.753759e-02	ci left: 2.057405e-03	ci right 2.246792e-03	k: 2000	n:930000
Cons ci ratio: 1.924856e-03	ci left: 8.160478e-01	ci right 8.176212e-01	k: 759657	n:930000
KS ci ratio: 1.984552e-01	ci left: 3.777485e-04	ci right 4.619732e-04	k: 389	n:930000
TRIL   930000 perm   504 sec   (1846 perm/sec)   p_kst 4.182796e-04   p_cons 8.168355e-01   p_joint 2.150538e-03

Joint ci ratio: 8.684544e-02	ci left: 2.068819e-03	ci right 2.257674e-03	k: 2032	n:940000
Cons ci ratio: 1.914885e-03	ci left: 8.160058e-01	ci right 8.175709e-01	k: 767782	n:940000
KS ci ratio: 1.966975e-01	ci left: 3.808084e-04	ci right 4.648732e-04	k: 396	n:940000
TRIL   940000 perm   513 sec   (1833 perm/sec)   p_kst 4.212766e-04   p_cons 8.167894e-01   p_joint 2.161702e-03

Joint ci ratio: 8.635825e-02	ci left: 2.070728e-03	ci right 2.258644e-03	k: 2055	n:950000
Cons ci ratio: 1.904357e-03	ci left: 8.160765e-01	ci right 8.176331e-01	k: 776013	n:950000
KS ci ratio: 1.957140e-01	ci left: 3.808036e-04	ci right 4.643969e-04	k: 400	n:950000
TRIL   950000 perm   522 sec   (1821 perm/sec)   p_kst 4.210526e-04   p_cons 8.168558e-01   p_joint 2.163158e-03

Joint ci ratio: 7.333212e-02	ci left: 2.858855e-03	ci right 3.077495e-03	k: 2848	n:960000
Cons ci ratio: 1.894667e-03	ci left: 8.160404e-01	ci right 8.175890e-01	k: 784143	n:960000
KS ci ratio: 1.952280e-01	ci left: 3.788182e-04	ci right 4.617447e-04	k: 402	n:960000
TRIL   960000 perm   531 sec   (1809 perm/sec)   p_kst 4.187500e-04   p_cons 8.168156e-01   p_joint 2.966667e-03

Joint ci ratio: 7.301265e-02	ci left: 2.854683e-03	ci right 3.072013e-03	k: 2873	n:970000
Cons ci ratio: 1.884844e-03	ci left: 8.160494e-01	ci right 8.175900e-01	k: 792316	n:970000
KS ci ratio: 1.945055e-01	ci left: 3.778547e-04	ci right 4.602279e-04	k: 405	n:970000
TRIL   970000 perm   540 sec   (1798 perm/sec)   p_kst 4.175258e-04   p_cons 8.168206e-01   p_joint 2.961856e-03

Joint ci ratio: 7.268475e-02	ci left: 2.851601e-03	ci right 3.067680e-03	k: 2899	n:980000
Cons ci ratio: 1.875338e-03	ci left: 8.160317e-01	ci right 8.175644e-01	k: 800463	n:980000
KS ci ratio: 1.933187e-01	ci left: 3.788534e-04	ci right 4.608811e-04	k: 410	n:980000
TRIL   980000 perm   549 sec   (1786 perm/sec)   p_kst 4.183673e-04   p_cons 8.167990e-01   p_joint 2.958163e-03

Joint ci ratio: 7.231167e-02	ci left: 2.852551e-03	ci right 3.067545e-03	k: 2929	n:990000
Cons ci ratio: 1.865711e-03	ci left: 8.160568e-01	ci right 8.175817e-01	k: 808652	n:990000
KS ci ratio: 1.926171e-01	ci left: 3.779105e-04	ci right 4.594023e-04	k: 413	n:990000
TRIL   990000 perm   558 sec   (1775 perm/sec)   p_kst 4.171717e-04   p_cons 8.168202e-01   p_joint 2.958586e-03

Joint ci ratio: 8.380780e-02	ci left: 2.091491e-03	ci right 2.275412e-03	k: 2182	n:1000000
Cons ci ratio: 1.856478e-03	ci left: 8.160414e-01	ci right 8.175588e-01	k: 816801	n:1000000
KS ci ratio: 1.916933e-01	ci left: 3.779390e-04	ci right 4.590005e-04	k: 417	n:1000000
TRIL   1000000 perm   567 sec   (1763 perm/sec)   p_kst 4.170000e-04   p_cons 8.168010e-01   p_joint 2.182000e-03

Joint ci ratio: 8.333186e-02	ci left: 2.095018e-03	ci right 2.278152e-03	k: 2207	n:1010000
Cons ci ratio: 1.846788e-03	ci left: 8.161225e-01	ci right 8.176321e-01	k: 825047	n:1010000
KS ci ratio: 1.907827e-01	ci left: 3.779678e-04	ci right 4.586057e-04	k: 421	n:1010000
TRIL   1010000 perm   577 sec   (1751 perm/sec)   p_kst 4.168317e-04   p_cons 8.168782e-01   p_joint 2.185149e-03

Joint ci ratio: 8.278966e-02	ci left: 2.102320e-03	ci right 2.284839e-03	k: 2236	n:1020000
Cons ci ratio: 1.836910e-03	ci left: 8.162571e-01	ci right 8.177588e-01	k: 833349	n:1020000
KS ci ratio: 1.894405e-01	ci left: 3.798647e-04	ci right 4.602715e-04	k: 427	n:1020000
TRIL   1020000 perm   586 sec   (1740 perm/sec)   p_kst 4.186275e-04   p_cons 8.170088e-01   p_joint 2.192157e-03

Joint ci ratio: 7.078178e-02	ci left: 2.863821e-03	ci right 3.074911e-03	k: 3057	n:1030000
Cons ci ratio: 1.827545e-03	ci left: 8.163307e-01	ci right 8.178248e-01	k: 841591	n:1030000
KS ci ratio: 1.885614e-01	ci left: 3.798764e-04	ci right 4.598699e-04	k: 431	n:1030000
TRIL   1030000 perm   596 sec   (1729 perm/sec)   p_kst 4.184466e-04   p_cons 8.170786e-01   p_joint 2.967961e-03

Joint ci ratio: 7.055177e-02	ci left: 2.855175e-03	ci right 3.064916e-03	k: 3077	n:1040000
Cons ci ratio: 1.818549e-03	ci left: 8.163653e-01	ci right 8.178522e-01	k: 849794	n:1040000
KS ci ratio: 1.881267e-01	ci left: 3.780561e-04	ci right 4.574618e-04	k: 433	n:1040000
TRIL   1040000 perm   606 sec   (1717 perm/sec)   p_kst 4.163462e-04   p_cons 8.171096e-01   p_joint 2.958654e-03

Joint ci ratio: 7.018779e-02	ci left: 2.857923e-03	ci right 3.066738e-03	k: 3109	n:1050000
Cons ci ratio: 1.809880e-03	ci left: 8.163668e-01	ci right 8.178466e-01	k: 857963	n:1050000
KS ci ratio: 1.868394e-01	ci left: 3.799017e-04	ci right 4.590871e-04	k: 439	n:1050000
TRIL   1050000 perm   615 sec   (1707 perm/sec)   p_kst 4.180952e-04   p_cons 8.171076e-01   p_joint 2.960952e-03

Joint ci ratio: 6.979596e-02	ci left: 2.863403e-03	ci right 3.071403e-03	k: 3144	n:1060000
Cons ci ratio: 1.801193e-03	ci left: 8.163920e-01	ci right 8.178647e-01	k: 866157	n:1060000
KS ci ratio: 1.855782e-01	ci left: 3.817143e-04	ci right 4.606800e-04	k: 445	n:1060000
TRIL   1060000 perm   625 sec   (1696 perm/sec)   p_kst 4.198113e-04   p_cons 8.171292e-01   p_joint 2.966038e-03

Joint ci ratio: 6.953135e-02	ci left: 2.858681e-03	ci right 3.065519e-03	k: 3168	n:1070000
Cons ci ratio: 1.792595e-03	ci left: 8.164223e-01	ci right 8.178881e-01	k: 874357	n:1070000
KS ci ratio: 1.853708e-01	ci left: 3.790380e-04	ci right 4.573526e-04	k: 446	n:1070000
TRIL   1070000 perm   635 sec   (1686 perm/sec)   p_kst 4.168224e-04   p_cons 8.171561e-01   p_joint 2.960748e-03

Joint ci ratio: 6.917202e-02	ci left: 2.862238e-03	ci right 3.068220e-03	k: 3201	n:1080000
Cons ci ratio: 1.784501e-03	ci left: 8.163881e-01	ci right 8.178472e-01	k: 882488	n:1080000
KS ci ratio: 1.843426e-01	ci left: 3.799438e-04	ci right 4.579614e-04	k: 451	n:1080000
TRIL   1080000 perm   645 sec   (1675 perm/sec)   p_kst 4.175926e-04   p_cons 8.171185e-01   p_joint 2.963889e-03

Joint ci ratio: 6.885023e-02	ci left: 2.863027e-03	ci right 3.068069e-03	k: 3231	n:1090000
Cons ci ratio: 1.776237e-03	ci left: 8.164014e-01	ci right 8.178537e-01	k: 890670	n:1090000
KS ci ratio: 1.835323e-01	ci left: 3.799589e-04	ci right 4.575985e-04	k: 455	n:1090000
TRIL   1090000 perm   655 sec   (1665 perm/sec)   p_kst 4.174312e-04   p_cons 8.171284e-01   p_joint 2.964220e-03

Joint ci ratio: 7.809197e-02	ci left: 2.196185e-03	ci right 2.375543e-03	k: 2513	n:1100000
Cons ci ratio: 1.851197e-03	ci left: 8.022646e-01	ci right 8.037520e-01	k: 883310	n:1100000
KS ci ratio: 1.829317e-01	ci left: 3.791069e-04	ci right 4.562907e-04	k: 458	n:1100000
TRIL   1100000 perm   665 sec   (1655 perm/sec)   p_kst 4.163636e-04   p_cons 8.030091e-01   p_joint 2.284545e-03

Joint ci ratio: 7.781407e-02	ci left: 2.192300e-03	ci right 2.370674e-03	k: 2531	n:1110000
Cons ci ratio: 1.842872e-03	ci left: 8.022625e-01	ci right 8.037432e-01	k: 891334	n:1110000
KS ci ratio: 1.821398e-01	ci left: 3.791304e-04	ci right 4.559481e-04	k: 462	n:1110000
TRIL   1110000 perm   675 sec   (1645 perm/sec)   p_kst 4.162162e-04   p_cons 8.030036e-01   p_joint 2.280180e-03

Joint ci ratio: 7.875567e-02	ci left: 2.120200e-03	ci right 2.294891e-03	k: 2471	n:1120000
Cons ci ratio: 1.834999e-03	ci left: 8.022014e-01	ci right 8.036756e-01	k: 899292	n:1120000
KS ci ratio: 1.805860e-01	ci left: 3.825640e-04	ci right 4.593438e-04	k: 470	n:1120000
TRIL   1120000 perm   685 sec   (1635 perm/sec)   p_kst 4.196429e-04   p_cons 8.029393e-01   p_joint 2.206250e-03

Joint ci ratio: 7.834461e-02	ci left: 2.123994e-03	ci right 2.298042e-03	k: 2497	n:1130000
Cons ci ratio: 1.826915e-03	ci left: 8.021954e-01	ci right 8.036632e-01	k: 907311	n:1130000
KS ci ratio: 1.802040e-01	ci left: 3.808684e-04	ci right 4.571286e-04	k: 472	n:1130000
TRIL   1130000 perm   695 sec   (1625 perm/sec)   p_kst 4.176991e-04   p_cons 8.029301e-01   p_joint 2.209735e-03

Joint ci ratio: 7.801739e-02	ci left: 2.123423e-03	ci right 2.296665e-03	k: 2518	n:1140000
Cons ci ratio: 1.818936e-03	ci left: 8.021896e-01	ci right 8.036509e-01	k: 915330	n:1140000
KS ci ratio: 1.792590e-01	ci left: 3.817162e-04	ci right 4.577018e-04	k: 477	n:1140000
TRIL   1140000 perm   706 sec   (1615 perm/sec)   p_kst 4.184211e-04   p_cons 8.029211e-01   p_joint 2.208772e-03

Joint ci ratio: 7.616188e-02	ci left: 2.210710e-03	ci right 2.386594e-03	k: 2642	n:1150000
Cons ci ratio: 1.811131e-03	ci left: 8.021717e-01	ci right 8.036267e-01	k: 923335	n:1150000
KS ci ratio: 1.777772e-01	ci left: 3.850426e-04	ci right 4.609887e-04	k: 485	n:1150000
TRIL   1150000 perm   716 sec   (1606 perm/sec)   p_kst 4.217391e-04   p_cons 8.029000e-01   p_joint 2.297391e-03

Joint ci ratio: 7.584690e-02	ci left: 2.210257e-03	ci right 2.385346e-03	k: 2664	n:1160000
Cons ci ratio: 1.803357e-03	ci left: 8.021663e-01	ci right 8.036150e-01	k: 931354	n:1160000
KS ci ratio: 1.770501e-01	ci left: 3.850184e-04	ci right 4.606159e-04	k: 489	n:1160000
TRIL   1160000 perm   727 sec   (1596 perm/sec)   p_kst 4.215517e-04   p_cons 8.028914e-01   p_joint 2.296552e-03

Joint ci ratio: 7.700007e-02	ci left: 2.125132e-03	ci right 2.296151e-03	k: 2585	n:1170000
Cons ci ratio: 1.795648e-03	ci left: 8.021669e-01	ci right 8.036094e-01	k: 939380	n:1170000
KS ci ratio: 1.763318e-01	ci left: 3.849953e-04	ci right 4.602489e-04	k: 493	n:1170000
TRIL   1170000 perm   738 sec   (1586 perm/sec)   p_kst 4.213675e-04   p_cons 8.028889e-01   p_joint 2.209402e-03

Joint ci ratio: 7.667462e-02	ci left: 2.125408e-03	ci right 2.295694e-03	k: 2607	n:1180000
Cons ci ratio: 1.788242e-03	ci left: 8.021310e-01	ci right 8.035675e-01	k: 947363	n:1180000
KS ci ratio: 1.759761e-01	ci left: 3.833528e-04	ci right 4.581181e-04	k: 495	n:1180000
TRIL   1180000 perm   749 sec   (1576 perm/sec)   p_kst 4.194915e-04   p_cons 8.028500e-01   p_joint 2.209322e-03

Joint ci ratio: 7.639694e-02	ci left: 2.123208e-03	ci right 2.292675e-03	k: 2626	n:1190000
Cons ci ratio: 1.780730e-03	ci left: 8.021311e-01	ci right 8.035616e-01	k: 955388	n:1190000
KS ci ratio: 1.750957e-01	ci left: 3.841484e-04	ci right 4.586544e-04	k: 500	n:1190000
TRIL   1190000 perm   760 sec   (1567 perm/sec)   p_kst 4.201681e-04   p_cons 8.028471e-01   p_joint 2.206723e-03

Joint ci ratio: 7.606465e-02	ci left: 2.124316e-03	ci right 2.293101e-03	k: 2649	n:1200000
Cons ci ratio: 1.773278e-03	ci left: 8.021370e-01	ci right 8.035615e-01	k: 963420	n:1200000
KS ci ratio: 1.749215e-01	ci left: 3.817440e-04	ci right 4.557022e-04	k: 501	n:1200000
TRIL   1200000 perm   770 sec   (1558 perm/sec)   p_kst 4.175000e-04   p_cons 8.028500e-01   p_joint 2.207500e-03

Joint ci ratio: 7.583625e-02	ci left: 2.119732e-03	ci right 2.287624e-03	k: 2665	n:1210000
Cons ci ratio: 1.766043e-03	ci left: 8.021205e-01	ci right 8.035392e-01	k: 971425	n:1210000
KS ci ratio: 1.745742e-01	ci left: 3.801696e-04	ci right 4.536612e-04	k: 503	n:1210000
TRIL   1210000 perm   782 sec   (1548 perm/sec)   p_kst 4.157025e-04   p_cons 8.028306e-01   p_joint 2.202479e-03

Joint ci ratio: 7.551120e-02	ci left: 2.120852e-03	ci right 2.288082e-03	k: 2688	n:1220000
Cons ci ratio: 1.758637e-03	ci left: 8.021511e-01	ci right 8.035638e-01	k: 979487	n:1220000
KS ci ratio: 1.737146e-01	ci left: 3.809732e-04	ci right 4.542194e-04	k: 508	n:1220000
TRIL   1220000 perm   793 sec   (1539 perm/sec)   p_kst 4.163934e-04   p_cons 8.028582e-01   p_joint 2.203279e-03

Joint ci ratio: 7.517640e-02	ci left: 2.122754e-03	ci right 2.289360e-03	k: 2712	n:1230000
Cons ci ratio: 1.751526e-03	ci left: 8.021446e-01	ci right 8.035516e-01	k: 987504	n:1230000
KS ci ratio: 1.733745e-01	ci left: 3.794313e-04	ci right 4.522232e-04	k: 510	n:1230000
TRIL   1230000 perm   804 sec   (1530 perm/sec)   p_kst 4.146341e-04   p_cons 8.028488e-01   p_joint 2.204878e-03

Joint ci ratio: 7.531631e-02	ci left: 2.097722e-03	ci right 2.262682e-03	k: 2702	n:1240000
Cons ci ratio: 1.744544e-03	ci left: 8.021301e-01	ci right 8.035314e-01	k: 995511	n:1240000
KS ci ratio: 1.721989e-01	ci left: 3.817724e-04	ci right 4.544653e-04	k: 517	n:1240000
TRIL   1240000 perm   815 sec   (1522 perm/sec)   p_kst 4.169355e-04   p_cons 8.028315e-01   p_joint 2.179032e-03

Joint ci ratio: 7.505307e-02	ci left: 2.095854e-03	ci right 2.260066e-03	k: 2721	n:1250000
Cons ci ratio: 1.737685e-03	ci left: 8.021086e-01	ci right 8.035044e-01	k: 1003509	n:1250000
KS ci ratio: 1.713737e-01	ci left: 3.825463e-04	ci right 4.550013e-04	k: 522	n:1250000
TRIL   1250000 perm   827 sec   (1512 perm/sec)   p_kst 4.176000e-04   p_cons 8.028072e-01   p_joint 2.176800e-03

Joint ci ratio: 7.472430e-02	ci left: 2.097911e-03	ci right 2.261533e-03	k: 2745	n:1260000
Cons ci ratio: 1.730759e-03	ci left: 8.021145e-01	ci right 8.035047e-01	k: 1011541	n:1260000
KS ci ratio: 1.702380e-01	ci left: 3.848283e-04	ci right 4.571830e-04	k: 529	n:1260000
TRIL   1260000 perm   838 sec   (1503 perm/sec)   p_kst 4.198413e-04   p_cons 8.028103e-01   p_joint 2.178571e-03

Joint ci ratio: 7.446720e-02	ci left: 2.096074e-03	ci right 2.258966e-03	k: 2764	n:1270000
Cons ci ratio: 1.723516e-03	ci left: 8.021936e-01	ci right 8.035782e-01	k: 1019666	n:1270000
KS ci ratio: 1.699179e-01	ci left: 3.833059e-04	ci right 4.552249e-04	k: 531	n:1270000
TRIL   1270000 perm   850 sec   (1495 perm/sec)   p_kst 4.181102e-04   p_cons 8.028866e-01   p_joint 2.176378e-03

Joint ci ratio: 7.427962e-02	ci left: 2.090432e-03	ci right 2.252459e-03	k: 2778	n:1280000
Cons ci ratio: 1.716922e-03	ci left: 8.021683e-01	ci right 8.035475e-01	k: 1027659	n:1280000
KS ci ratio: 1.694409e-01	ci left: 3.825555e-04	ci right 4.541117e-04	k: 534	n:1280000
TRIL   1280000 perm   861 sec   (1486 perm/sec)   p_kst 4.171875e-04   p_cons 8.028586e-01   p_joint 2.170312e-03

Joint ci ratio: 7.390804e-02	ci left: 2.095531e-03	ci right 2.257105e-03	k: 2806	n:1290000
Cons ci ratio: 1.710249e-03	ci left: 8.021721e-01	ci right 8.035459e-01	k: 1035689	n:1290000
KS ci ratio: 1.686546e-01	ci left: 3.833020e-04	ci right 4.546312e-04	k: 539	n:1290000
TRIL   1290000 perm   873 sec   (1477 perm/sec)   p_kst 4.178295e-04   p_cons 8.028597e-01   p_joint 2.175194e-03

Joint ci ratio: 7.354198e-02	ci left: 2.100553e-03	ci right 2.261678e-03	k: 2834	n:1300000
Cons ci ratio: 1.703623e-03	ci left: 8.021812e-01	ci right 8.035497e-01	k: 1043726	n:1300000
KS ci ratio: 1.683432e-01	ci left: 3.818270e-04	ci right 4.527374e-04	k: 541	n:1300000
TRIL   1300000 perm   885 sec   (1469 perm/sec)   p_kst 4.161538e-04   p_cons 8.028662e-01   p_joint 2.180000e-03

Joint ci ratio: 7.328399e-02	ci left: 2.099505e-03	ci right 2.259961e-03	k: 2854	n:1310000
Cons ci ratio: 1.697213e-03	ci left: 8.021642e-01	ci right 8.035276e-01	k: 1051729	n:1310000
KS ci ratio: 1.675720e-01	ci left: 3.825687e-04	ci right 4.532584e-04	k: 546	n:1310000
TRIL   1310000 perm   897 sec   (1461 perm/sec)   p_kst 4.167939e-04   p_cons 8.028466e-01   p_joint 2.178626e-03

Joint ci ratio: 7.299053e-02	ci left: 2.100705e-03	ci right 2.260583e-03	k: 2877	n:1320000
Cons ci ratio: 1.690309e-03	ci left: 8.022537e-01	ci right 8.036116e-01	k: 1059872	n:1320000
KS ci ratio: 1.669627e-01	ci left: 3.825739e-04	ci right 4.529817e-04	k: 550	n:1320000
TRIL   1320000 perm   909 sec   (1452 perm/sec)   p_kst 4.166667e-04   p_cons 8.029333e-01   p_joint 2.179545e-03

Joint ci ratio: 7.277604e-02	ci left: 2.097459e-03	ci right 2.256601e-03	k: 2894	n:1330000
Cons ci ratio: 1.684160e-03	ci left: 8.022154e-01	ci right 8.035683e-01	k: 1067847	n:1330000
KS ci ratio: 1.666606e-01	ci left: 3.811384e-04	ci right 4.511423e-04	k: 552	n:1330000
TRIL   1330000 perm   921 sec   (1444 perm/sec)   p_kst 4.150376e-04   p_cons 8.028925e-01   p_joint 2.175940e-03

Joint ci ratio: 7.252600e-02	ci left: 2.096461e-03	ci right 2.254957e-03	k: 2914	n:1340000
Cons ci ratio: 1.677800e-03	ci left: 8.022299e-01	ci right 8.035777e-01	k: 1075892	n:1340000
KS ci ratio: 1.662105e-01	ci left: 3.804396e-04	ci right 4.501076e-04	k: 555	n:1340000
TRIL   1340000 perm   933 sec   (1436 perm/sec)   p_kst 4.141791e-04   p_cons 8.029045e-01   p_joint 2.174627e-03

Joint ci ratio: 7.247677e-02	ci left: 2.083840e-03	ci right 2.241271e-03	k: 2918	n:1350000
Cons ci ratio: 1.671680e-03	ci left: 8.022124e-01	ci right 8.035552e-01	k: 1083894	n:1350000
KS ci ratio: 1.656158e-01	ci left: 3.804615e-04	ci right 4.498593e-04	k: 559	n:1350000
TRIL   1350000 perm   946 sec   (1428 perm/sec)   p_kst 4.140741e-04   p_cons 8.028844e-01   p_joint 2.161481e-03

Joint ci ratio: 7.225443e-02	ci left: 2.081514e-03	ci right 2.238266e-03	k: 2936	n:1360000
Cons ci ratio: 1.665310e-03	ci left: 8.022554e-01	ci right 8.035933e-01	k: 1091978	n:1360000
KS ci ratio: 1.648813e-01	ci left: 3.811884e-04	ci right 4.503799e-04	k: 564	n:1360000
TRIL   1360000 perm   958 sec   (1420 perm/sec)   p_kst 4.147059e-04   p_cons 8.029250e-01   p_joint 2.158824e-03

Joint ci ratio: 7.245305e-02	ci left: 2.054852e-03	ci right 2.210039e-03	k: 2920	n:1370000
Cons ci ratio: 1.659421e-03	ci left: 8.022197e-01	ci right 8.035527e-01	k: 1099955	n:1370000
KS ci ratio: 1.648816e-01	ci left: 3.784059e-04	ci right 4.470925e-04	k: 564	n:1370000
TRIL   1370000 perm   970 sec   (1412 perm/sec)   p_kst 4.116788e-04   p_cons 8.028869e-01   p_joint 2.131387e-03

Joint ci ratio: 7.224324e-02	ci left: 2.052057e-03	ci right 2.206566e-03	k: 2937	n:1380000
Cons ci ratio: 1.653336e-03	ci left: 8.022338e-01	ci right 8.035620e-01	k: 1108000	n:1380000
KS ci ratio: 1.638694e-01	ci left: 3.805277e-04	ci right 4.491336e-04	k: 571	n:1380000
TRIL   1380000 perm   982 sec   (1405 perm/sec)   p_kst 4.137681e-04   p_cons 8.028986e-01   p_joint 2.128261e-03

Joint ci ratio: 7.198644e-02	ci left: 2.052130e-03	ci right 2.206072e-03	k: 2958	n:1390000
Cons ci ratio: 1.647277e-03	ci left: 8.022557e-01	ci right 8.035790e-01	k: 1116056	n:1390000
KS ci ratio: 1.632994e-01	ci left: 3.805500e-04	ci right 4.488979e-04	k: 575	n:1390000
TRIL   1390000 perm   995 sec   (1397 perm/sec)   p_kst 4.136691e-04   p_cons 8.029180e-01   p_joint 2.128058e-03

Joint ci ratio: 7.166009e-02	ci left: 2.056411e-03	ci right 2.209946e-03	k: 2985	n:1400000
Cons ci ratio: 1.641340e-03	ci left: 8.022665e-01	ci right 8.035851e-01	k: 1124097	n:1400000
KS ci ratio: 1.630168e-01	ci left: 3.792020e-04	ci right 4.471783e-04	k: 577	n:1400000
TRIL   1400000 perm   1007 sec   (1390 perm/sec)   p_kst 4.121429e-04   p_cons 8.029264e-01   p_joint 2.132143e-03

Joint ci ratio: 7.098487e-02	ci left: 2.081532e-03	ci right 2.235418e-03	k: 3042	n:1410000
Cons ci ratio: 1.635429e-03	ci left: 8.022843e-01	ci right 8.035981e-01	k: 1132148	n:1410000
KS ci ratio: 1.625954e-01	ci left: 3.785536e-04	ci right 4.462211e-04	k: 580	n:1410000
TRIL   1410000 perm   1020 sec   (1382 perm/sec)   p_kst 4.113475e-04   p_cons 8.029418e-01   p_joint 2.157447e-03

Joint ci ratio: 7.067190e-02	ci left: 2.085551e-03	ci right 2.239026e-03	k: 3069	n:1420000
Cons ci ratio: 1.629637e-03	ci left: 8.022913e-01	ci right 8.036005e-01	k: 1140184	n:1420000
KS ci ratio: 1.616245e-01	ci left: 3.806173e-04	ci right 4.482081e-04	k: 587	n:1420000
TRIL   1420000 perm   1033 sec   (1375 perm/sec)   p_kst 4.133803e-04   p_cons 8.029465e-01   p_joint 2.161268e-03

Joint ci ratio: 7.052295e-02	ci left: 2.079897e-03	ci right 2.232620e-03	k: 3082	n:1430000
Cons ci ratio: 1.624056e-03	ci left: 8.022687e-01	ci right 8.035734e-01	k: 1148178	n:1430000
KS ci ratio: 1.610776e-01	ci left: 3.806399e-04	ci right 4.479838e-04	k: 591	n:1430000
TRIL   1430000 perm   1046 sec   (1368 perm/sec)   p_kst 4.132867e-04   p_cons 8.029217e-01   p_joint 2.155245e-03

Joint ci ratio: 7.023866e-02	ci left: 2.082509e-03	ci right 2.234782e-03	k: 3107	n:1440000
Cons ci ratio: 1.618632e-03	ci left: 8.022271e-01	ci right 8.035273e-01	k: 1156144	n:1440000
KS ci ratio: 1.602674e-01	ci left: 3.819958e-04	ci right 4.492068e-04	k: 597	n:1440000
TRIL   1440000 perm   1058 sec   (1361 perm/sec)   p_kst 4.145833e-04   p_cons 8.028778e-01   p_joint 2.157639e-03

Joint ci ratio: 7.005870e-02	ci left: 2.078987e-03	ci right 2.230598e-03	k: 3123	n:1450000
Cons ci ratio: 1.612917e-03	ci left: 8.022536e-01	ci right 8.035493e-01	k: 1164208	n:1450000
KS ci ratio: 1.600002e-01	ci left: 3.806853e-04	ci right 4.475434e-04	k: 599	n:1450000
TRIL   1450000 perm   1071 sec   (1354 perm/sec)   p_kst 4.131034e-04   p_cons 8.029021e-01   p_joint 2.153793e-03

Joint ci ratio: 6.971344e-02	ci left: 2.085610e-03	ci right 2.236924e-03	k: 3154	n:1460000
Cons ci ratio: 1.607220e-03	ci left: 8.022881e-01	ci right 8.035792e-01	k: 1172284	n:1460000
KS ci ratio: 1.592060e-01	ci left: 3.820234e-04	ci right 4.487516e-04	k: 605	n:1460000
TRIL   1460000 perm   1084 sec   (1347 perm/sec)   p_kst 4.143836e-04   p_cons 8.029342e-01   p_joint 2.160274e-03

Joint ci ratio: 6.950453e-02	ci left: 2.084122e-03	ci right 2.234857e-03	k: 3173	n:1470000
Cons ci ratio: 1.601587e-03	ci left: 8.023214e-01	ci right 8.036080e-01	k: 1180359	n:1470000
KS ci ratio: 1.592062e-01	ci left: 3.794245e-04	ci right 4.456989e-04	k: 605	n:1470000
TRIL   1470000 perm   1097 sec   (1340 perm/sec)   p_kst 4.115646e-04   p_cons 8.029653e-01   p_joint 2.158503e-03

Joint ci ratio: 6.929749e-02	ci left: 2.082655e-03	ci right 2.232817e-03	k: 3192	n:1480000
Cons ci ratio: 1.596387e-03	ci left: 8.022798e-01	ci right 8.035622e-01	k: 1188324	n:1480000
KS ci ratio: 1.586834e-01	ci left: 3.794561e-04	ci right 4.454976e-04	k: 609	n:1480000
TRIL   1480000 perm   1111 sec   (1333 perm/sec)   p_kst 4.114865e-04   p_cons 8.029216e-01   p_joint 2.156757e-03

Joint ci ratio: 6.902770e-02	ci left: 2.085166e-03	ci right 2.234900e-03	k: 3217	n:1490000
Cons ci ratio: 1.590968e-03	ci left: 8.022926e-01	ci right 8.035707e-01	k: 1196369	n:1490000
KS ci ratio: 1.577805e-01	ci left: 3.814214e-04	ci right 4.473915e-04	k: 616	n:1490000
TRIL   1490000 perm   1124 sec   (1326 perm/sec)   p_kst 4.134228e-04   p_cons 8.029322e-01   p_joint 2.159060e-03

Joint ci ratio: 6.876104e-02	ci left: 2.087645e-03	ci right 2.236955e-03	k: 3242	n:1500000
Cons ci ratio: 1.585624e-03	ci left: 8.023012e-01	ci right 8.035750e-01	k: 1204408	n:1500000
KS ci ratio: 1.571450e-01	ci left: 3.820806e-04	ci right 4.478734e-04	k: 621	n:1500000
TRIL   1500000 perm   1137 sec   (1319 perm/sec)   p_kst 4.140000e-04   p_cons 8.029387e-01   p_joint 2.161333e-03

Joint ci ratio: 6.848695e-02	ci left: 2.090742e-03	ci right 2.239654e-03	k: 3268	n:1510000
Cons ci ratio: 1.580263e-03	ci left: 8.023236e-01	ci right 8.035931e-01	k: 1212468	n:1510000
KS ci ratio: 1.561439e-01	ci left: 3.846406e-04	ci right 4.504128e-04	k: 629	n:1510000
TRIL   1510000 perm   1150 sec   (1313 perm/sec)   p_kst 4.165563e-04   p_cons 8.029589e-01   p_joint 2.164238e-03

Joint ci ratio: 6.825765e-02	ci left: 2.091214e-03	ci right 2.239641e-03	k: 3290	n:1520000
Cons ci ratio: 1.574829e-03	ci left: 8.023714e-01	ci right 8.036366e-01	k: 1220567	n:1520000
KS ci ratio: 1.555279e-01	ci left: 3.852713e-04	ci right 4.508672e-04	k: 634	n:1520000
TRIL   1520000 perm   1164 sec   (1306 perm/sec)   p_kst 4.171053e-04   p_cons 8.030046e-01   p_joint 2.164474e-03

Joint ci ratio: 6.808214e-02	ci left: 2.088467e-03	ci right 2.236303e-03	k: 3307	n:1530000
Cons ci ratio: 1.569726e-03	ci left: 8.023630e-01	ci right 8.036241e-01	k: 1228581	n:1530000
KS ci ratio: 1.550404e-01	ci left: 3.852660e-04	ci right 4.506363e-04	k: 638	n:1530000
TRIL   1530000 perm   1177 sec   (1299 perm/sec)   p_kst 4.169935e-04   p_cons 8.029941e-01   p_joint 2.161438e-03

Joint ci ratio: 6.793869e-02	ci left: 2.083842e-03	ci right 2.231027e-03	k: 3321	n:1540000
Cons ci ratio: 1.564509e-03	ci left: 8.023878e-01	ci right 8.036448e-01	k: 1236646	n:1540000
KS ci ratio: 1.545574e-01	ci left: 3.852610e-04	ci right 4.504080e-04	k: 642	n:1540000
TRIL   1540000 perm   1191 sec   (1293 perm/sec)   p_kst 4.168831e-04   p_cons 8.030169e-01   p_joint 2.156494e-03

Joint ci ratio: 6.777579e-02	ci left: 2.080545e-03	ci right 2.227131e-03	k: 3337	n:1550000
Cons ci ratio: 1.559432e-03	ci left: 8.023943e-01	ci right 8.036472e-01	k: 1244683	n:1550000
KS ci ratio: 1.540789e-01	ci left: 3.852565e-04	ci right 4.501824e-04	k: 646	n:1550000
TRIL   1550000 perm   1205 sec   (1287 perm/sec)   p_kst 4.167742e-04   p_cons 8.030213e-01   p_joint 2.152903e-03

Joint ci ratio: 6.757369e-02	ci left: 2.079812e-03	ci right 2.225892e-03	k: 3357	n:1560000
Cons ci ratio: 1.554499e-03	ci left: 8.023814e-01	ci right 8.036303e-01	k: 1252690	n:1560000
KS ci ratio: 1.538414e-01	ci left: 3.840195e-04	ci right 4.486280e-04	k: 648	n:1560000
TRIL   1560000 perm   1219 sec   (1280 perm/sec)   p_kst 4.153846e-04   p_cons 8.030064e-01   p_joint 2.151923e-03

Joint ci ratio: 6.734343e-02	ci left: 2.080967e-03	ci right 2.226611e-03	k: 3380	n:1570000
Cons ci ratio: 1.549606e-03	ci left: 8.023700e-01	ci right 8.036149e-01	k: 1260699	n:1570000
KS ci ratio: 1.529017e-01	ci left: 3.864736e-04	ci right 4.510614e-04	k: 656	n:1570000
TRIL   1570000 perm   1233 sec   (1274 perm/sec)   p_kst 4.178344e-04   p_cons 8.029930e-01   p_joint 2.152866e-03

Joint ci ratio: 6.721451e-02	ci left: 2.075886e-03	ci right 2.220885e-03	k: 3393	n:1580000
Cons ci ratio: 1.544688e-03	ci left: 8.023733e-01	ci right 8.036142e-01	k: 1268731	n:1580000
KS ci ratio: 1.525539e-01	ci left: 3.858537e-04	ci right 4.501778e-04	k: 659	n:1580000
TRIL   1580000 perm   1247 sec   (1268 perm/sec)   p_kst 4.170886e-04   p_cons 8.029943e-01   p_joint 2.147468e-03

Joint ci ratio: 6.700754e-02	ci left: 2.075816e-03	ci right 2.220347e-03	k: 3414	n:1590000
Cons ci ratio: 1.539912e-03	ci left: 8.023570e-01	ci right 8.035941e-01	k: 1276732	n:1590000
KS ci ratio: 1.522084e-01	ci left: 3.852418e-04	ci right 4.493052e-04	k: 662	n:1590000
TRIL   1590000 perm   1260 sec   (1261 perm/sec)   p_kst 4.163522e-04   p_cons 8.029761e-01   p_joint 2.147170e-03

Joint ci ratio: 6.681222e-02	ci left: 2.075133e-03	ci right 2.219179e-03	k: 3434	n:1600000
Cons ci ratio: 1.535328e-03	ci left: 8.023103e-01	ci right 8.035436e-01	k: 1284684	n:1600000
KS ci ratio: 1.517513e-01	ci left: 3.852390e-04	ci right 4.490921e-04	k: 666	n:1600000
TRIL   1600000 perm   1275 sec   (1255 perm/sec)   p_kst 4.162500e-04   p_cons 8.029275e-01   p_joint 2.146250e-03

Joint ci ratio: 6.664759e-02	ci left: 2.072627e-03	ci right 2.216130e-03	k: 3451	n:1610000
Cons ci ratio: 1.530505e-03	ci left: 8.023220e-01	ci right 8.035515e-01	k: 1292729	n:1610000
KS ci ratio: 1.510733e-01	ci left: 3.864317e-04	ci right 4.501704e-04	k: 672	n:1610000
TRIL   1610000 perm   1289 sec   (1249 perm/sec)   p_kst 4.173913e-04   p_cons 8.029373e-01   p_joint 2.143478e-03

Joint ci ratio: 6.651300e-02	ci left: 2.068331e-03	ci right 2.211236e-03	k: 3465	n:1620000
Cons ci ratio: 1.525974e-03	ci left: 8.022822e-01	ci right 8.035080e-01	k: 1300691	n:1620000
KS ci ratio: 1.509613e-01	ci left: 3.846403e-04	ci right 4.480322e-04	k: 673	n:1620000
TRIL   1620000 perm   1303 sec   (1243 perm/sec)   p_kst 4.154321e-04   p_cons 8.028957e-01   p_joint 2.138889e-03

Joint ci ratio: 6.633149e-02	ci left: 2.067104e-03	ci right 2.209521e-03	k: 3484	n:1630000
Cons ci ratio: 1.521283e-03	ci left: 8.022848e-01	ci right 8.035068e-01	k: 1308721	n:1630000
KS ci ratio: 1.502937e-01	ci left: 3.858228e-04	ci right 4.491032e-04	k: 679	n:1630000
TRIL   1630000 perm   1318 sec   (1237 perm/sec)   p_kst 4.165644e-04   p_cons 8.028963e-01   p_joint 2.137423e-03

Joint ci ratio: 6.606649e-02	ci left: 2.071291e-03	ci right 2.213403e-03	k: 3512	n:1640000
Cons ci ratio: 1.516620e-03	ci left: 8.022903e-01	ci right 8.035086e-01	k: 1316756	n:1640000
KS ci ratio: 1.500733e-01	ci left: 3.846439e-04	ci right 4.476301e-04	k: 681	n:1640000
TRIL   1640000 perm   1332 sec   (1231 perm/sec)   p_kst 4.152439e-04   p_cons 8.029000e-01   p_joint 2.141463e-03

Joint ci ratio: 6.585124e-02	ci left: 2.072447e-03	ci right 2.214158e-03	k: 3535	n:1650000
Cons ci ratio: 1.512087e-03	ci left: 8.022776e-01	ci right 8.034922e-01	k: 1324761	n:1650000
KS ci ratio: 1.497444e-01	ci left: 3.840627e-04	ci right 4.468035e-04	k: 684	n:1650000
TRIL   1650000 perm   1346 sec   (1225 perm/sec)   p_kst 4.145455e-04   p_cons 8.028855e-01   p_joint 2.142424e-03

Joint ci ratio: 6.566582e-02	ci left: 2.071812e-03	ci right 2.213066e-03	k: 3555	n:1660000
Cons ci ratio: 1.507253e-03	ci left: 8.023368e-01	ci right 8.035477e-01	k: 1332885	n:1660000
KS ci ratio: 1.497446e-01	ci left: 3.817490e-04	ci right 4.441119e-04	k: 684	n:1660000
TRIL   1660000 perm   1361 sec   (1220 perm/sec)   p_kst 4.120482e-04   p_cons 8.029428e-01   p_joint 2.141566e-03

Joint ci ratio: 6.544529e-02	ci left: 2.073542e-03	ci right 2.214421e-03	k: 3579	n:1670000
Cons ci ratio: 1.502822e-03	ci left: 8.023198e-01	ci right 8.035270e-01	k: 1340883	n:1670000
KS ci ratio: 1.490929e-01	ci left: 3.829216e-04	ci right 4.451796e-04	k: 690	n:1670000
TRIL   1670000 perm   1376 sec   (1214 perm/sec)   p_kst 4.131737e-04   p_cons 8.029240e-01   p_joint 2.143114e-03

Joint ci ratio: 6.521790e-02	ci left: 2.075838e-03	ci right 2.216364e-03	k: 3604	n:1680000
Cons ci ratio: 1.498287e-03	ci left: 8.023334e-01	ci right 8.035370e-01	k: 1348932	n:1680000
KS ci ratio: 1.486633e-01	ci left: 3.829345e-04	ci right 4.449993e-04	k: 694	n:1680000
TRIL   1680000 perm   1391 sec   (1208 perm/sec)   p_kst 4.130952e-04   p_cons 8.029357e-01   p_joint 2.145238e-03

Joint ci ratio: 6.499287e-02	ci left: 2.078107e-03	ci right 2.218283e-03	k: 3629	n:1690000
Cons ci ratio: 1.493726e-03	ci left: 8.023610e-01	ci right 8.035610e-01	k: 1357005	n:1690000
KS ci ratio: 1.482373e-01	ci left: 3.829476e-04	ci right 4.448209e-04	k: 698	n:1690000
TRIL   1690000 perm   1405 sec   (1202 perm/sec)   p_kst 4.130178e-04   p_cons 8.029615e-01   p_joint 2.147337e-03

Joint ci ratio: 6.477903e-02	ci left: 2.079771e-03	ci right 2.219581e-03	k: 3653	n:1700000
Cons ci ratio: 1.489245e-03	ci left: 8.023801e-01	ci right 8.035765e-01	k: 1365064	n:1700000
KS ci ratio: 1.478150e-01	ci left: 3.829608e-04	ci right 4.446443e-04	k: 702	n:1700000
TRIL   1700000 perm   1420 sec   (1197 perm/sec)   p_kst 4.129412e-04   p_cons 8.029788e-01   p_joint 2.148824e-03

Joint ci ratio: 6.468194e-02	ci left: 2.073937e-03	ci right 2.213138e-03	k: 3664	n:1710000
Cons ci ratio: 1.484908e-03	ci left: 8.023767e-01	ci right 8.035696e-01	k: 1373085	n:1710000
KS ci ratio: 1.476053e-01	ci left: 3.818476e-04	ci right 4.432569e-04	k: 704	n:1710000
TRIL   1710000 perm   1435 sec   (1191 perm/sec)   p_kst 4.116959e-04   p_cons 8.029737e-01   p_joint 2.142690e-03

Joint ci ratio: 6.440120e-02	ci left: 2.080184e-03	ci right 2.219175e-03	k: 3696	n:1720000
Cons ci ratio: 1.480644e-03	ci left: 8.023658e-01	ci right 8.035553e-01	k: 1381093	n:1720000
KS ci ratio: 1.464667e-01	ci left: 3.857877e-04	ci right 4.473102e-04	k: 715	n:1720000
TRIL   1720000 perm   1450 sec   (1186 perm/sec)   p_kst 4.156977e-04   p_cons 8.029610e-01   p_joint 2.148837e-03

Joint ci ratio: 6.418449e-02	ci left: 2.082378e-03	ci right 2.221031e-03	k: 3721	n:1730000
Cons ci ratio: 1.476207e-03	ci left: 8.024002e-01	ci right 8.035861e-01	k: 1389179	n:1730000
KS ci ratio: 1.460593e-01	ci left: 3.857852e-04	ci right 4.471213e-04	k: 719	n:1730000
TRIL   1730000 perm   1465 sec   (1181 perm/sec)   p_kst 4.156069e-04   p_cons 8.029936e-01   p_joint 2.150867e-03

Joint ci ratio: 6.402991e-02	ci left: 2.080590e-03	ci right 2.218777e-03	k: 3739	n:1740000
Cons ci ratio: 1.472237e-03	ci left: 8.023421e-01	ci right 8.035247e-01	k: 1397105	n:1740000
KS ci ratio: 1.456553e-01	ci left: 3.857830e-04	ci right 4.469343e-04	k: 723	n:1740000
TRIL   1740000 perm   1481 sec   (1175 perm/sec)   p_kst 4.155172e-04   p_cons 8.029339e-01   p_joint 2.148851e-03

Joint ci ratio: 6.382541e-02	ci left: 2.082196e-03	ci right 2.220032e-03	k: 3763	n:1750000
Cons ci ratio: 1.467900e-03	ci left: 8.023705e-01	ci right 8.035497e-01	k: 1405181	n:1750000
KS ci ratio: 1.451549e-01	ci left: 3.863317e-04	ci right 4.473414e-04	k: 728	n:1750000
TRIL   1750000 perm   1497 sec   (1169 perm/sec)   p_kst 4.160000e-04   p_cons 8.029606e-01   p_joint 2.150286e-03

Joint ci ratio: 6.363126e-02	ci left: 2.083225e-03	ci right 2.220694e-03	k: 3786	n:1760000
Cons ci ratio: 1.463763e-03	ci left: 8.023638e-01	ci right 8.035397e-01	k: 1413196	n:1760000
KS ci ratio: 1.449563e-01	ci left: 3.852318e-04	ci right 4.459773e-04	k: 730	n:1760000
TRIL   1760000 perm   1512 sec   (1164 perm/sec)   p_kst 4.147727e-04   p_cons 8.029523e-01   p_joint 2.151136e-03

Joint ci ratio: 6.341387e-02	ci left: 2.085911e-03	ci right 2.223070e-03	k: 3812	n:1770000
Cons ci ratio: 1.459589e-03	ci left: 8.023726e-01	ci right 8.035451e-01	k: 1421238	n:1770000
KS ci ratio: 1.444630e-01	ci left: 3.857779e-04	ci right 4.463847e-04	k: 735	n:1770000
TRIL   1770000 perm   1527 sec   (1159 perm/sec)   p_kst 4.152542e-04   p_cons 8.029593e-01   p_joint 2.153672e-03

Joint ci ratio: 6.319044e-02	ci left: 2.089121e-03	ci right 2.225990e-03	k: 3839	n:1780000
Cons ci ratio: 1.455488e-03	ci left: 8.023733e-01	ci right 8.035426e-01	k: 1429266	n:1780000
KS ci ratio: 1.436841e-01	ci left: 3.879430e-04	ci right 4.485332e-04	k: 743	n:1780000
TRIL   1780000 perm   1543 sec   (1154 perm/sec)   p_kst 4.174157e-04   p_cons 8.029584e-01   p_joint 2.156742e-03

Joint ci ratio: 6.300202e-02	ci left: 2.090097e-03	ci right 2.226606e-03	k: 3862	n:1790000
Cons ci ratio: 1.451436e-03	ci left: 8.023707e-01	ci right 8.035367e-01	k: 1437288	n:1790000
KS ci ratio: 1.435878e-01	ci left: 3.863143e-04	ci right 4.466061e-04	k: 744	n:1790000
TRIL   1790000 perm   1558 sec   (1149 perm/sec)   p_kst 4.156425e-04   p_cons 8.029542e-01   p_joint 2.157542e-03

Joint ci ratio: 6.285581e-02	ci left: 2.088328e-03	ci right 2.224393e-03	k: 3880	n:1800000
Cons ci ratio: 1.447291e-03	ci left: 8.023960e-01	ci right 8.035586e-01	k: 1445360	n:1800000
KS ci ratio: 1.431083e-01	ci left: 3.868463e-04	ci right 4.470023e-04	k: 749	n:1800000
TRIL   1800000 perm   1574 sec   (1144 perm/sec)   p_kst 4.161111e-04   p_cons 8.029778e-01   p_joint 2.155556e-03

Joint ci ratio: 6.273481e-02	ci left: 2.084947e-03	ci right 2.220521e-03	k: 3895	n:1810000
Cons ci ratio: 1.443186e-03	ci left: 8.024198e-01	ci right 8.035792e-01	k: 1453430	n:1810000
KS ci ratio: 1.431085e-01	ci left: 3.847090e-04	ci right 4.445327e-04	k: 749	n:1810000
TRIL   1810000 perm   1589 sec   (1139 perm/sec)   p_kst 4.138122e-04   p_cons 8.030000e-01   p_joint 2.151934e-03

Joint ci ratio: 6.257443e-02	ci left: 2.084308e-03	ci right 2.219482e-03	k: 3915	n:1820000
Cons ci ratio: 1.439418e-03	ci left: 8.023769e-01	ci right 8.035332e-01	k: 1461379	n:1820000
KS ci ratio: 1.428231e-01	ci left: 3.841846e-04	ci right 4.437975e-04	k: 752	n:1820000
TRIL   1820000 perm   1605 sec   (1134 perm/sec)   p_kst 4.131868e-04   p_cons 8.029555e-01   p_joint 2.151099e-03

Joint ci ratio: 6.246300e-02	ci left: 2.080449e-03	ci right 2.215123e-03	k: 3929	n:1830000
Cons ci ratio: 1.435464e-03	ci left: 8.023820e-01	ci right 8.035351e-01	k: 1469415	n:1830000
KS ci ratio: 1.422574e-01	ci left: 3.852470e-04	ci right 4.447679e-04	k: 758	n:1830000
TRIL   1830000 perm   1621 sec   (1129 perm/sec)   p_kst 4.142077e-04   p_cons 8.029590e-01   p_joint 2.146995e-03

Joint ci ratio: 6.231260e-02	ci left: 2.079307e-03	ci right 2.213572e-03	k: 3948	n:1840000
Cons ci ratio: 1.431645e-03	ci left: 8.023642e-01	ci right 8.035142e-01	k: 1477409	n:1840000
KS ci ratio: 1.416984e-01	ci left: 3.862983e-04	ci right 4.457273e-04	k: 764	n:1840000
TRIL   1840000 perm   1637 sec   (1124 perm/sec)   p_kst 4.152174e-04   p_cons 8.029397e-01   p_joint 2.145652e-03

Joint ci ratio: 6.215542e-02	ci left: 2.078710e-03	ci right 2.212586e-03	k: 3968	n:1850000
Cons ci ratio: 1.427750e-03	ci left: 8.023704e-01	ci right 8.035173e-01	k: 1485447	n:1850000
KS ci ratio: 1.412376e-01	ci left: 3.868173e-04	ci right 4.461163e-04	k: 769	n:1850000
TRIL   1850000 perm   1652 sec   (1120 perm/sec)   p_kst 4.156757e-04   p_cons 8.029443e-01   p_joint 2.144865e-03

Joint ci ratio: 6.196831e-02	ci left: 2.080237e-03	ci right 2.213793e-03	k: 3992	n:1860000
Cons ci ratio: 1.423934e-03	ci left: 8.023658e-01	ci right 8.035096e-01	k: 1493465	n:1860000
KS ci ratio: 1.405998e-01	ci left: 3.883684e-04	ci right 4.476138e-04	k: 776	n:1860000
TRIL   1860000 perm   1668 sec   (1115 perm/sec)   p_kst 4.172043e-04   p_cons 8.029382e-01   p_joint 2.146237e-03

Joint ci ratio: 6.184462e-02	ci left: 2.077537e-03	ci right 2.210644e-03	k: 4008	n:1870000
Cons ci ratio: 1.420029e-03	ci left: 8.023880e-01	ci right 8.035287e-01	k: 1501533	n:1870000
KS ci ratio: 1.402393e-01	ci left: 3.883554e-04	ci right 4.474343e-04	k: 780	n:1870000
TRIL   1870000 perm   1684 sec   (1110 perm/sec)   p_kst 4.171123e-04   p_cons 8.029588e-01   p_joint 2.143316e-03

Joint ci ratio: 6.167561e-02	ci left: 2.078008e-03	ci right 2.210768e-03	k: 4030	n:1880000
Cons ci ratio: 1.416318e-03	ci left: 8.023738e-01	ci right 8.035115e-01	k: 1509533	n:1880000
KS ci ratio: 1.399708e-01	ci left: 3.878295e-04	ci right 4.467060e-04	k: 783	n:1880000
TRIL   1880000 perm   1700 sec   (1106 perm/sec)   p_kst 4.164894e-04   p_cons 8.029431e-01   p_joint 2.143617e-03

Joint ci ratio: 6.152320e-02	ci left: 2.077432e-03	ci right 2.209815e-03	k: 4050	n:1890000
Cons ci ratio: 1.412657e-03	ci left: 8.023549e-01	ci right 8.034897e-01	k: 1517524	n:1890000
KS ci ratio: 1.397038e-01	ci left: 3.873093e-04	ci right 4.459853e-04	k: 786	n:1890000
TRIL   1890000 perm   1716 sec   (1102 perm/sec)   p_kst 4.158730e-04   p_cons 8.029228e-01   p_joint 2.142857e-03

Joint ci ratio: 6.132664e-02	ci left: 2.079972e-03	ci right 2.212079e-03	k: 4076	n:1900000
Cons ci ratio: 1.408984e-03	ci left: 8.023452e-01	ci right 8.034770e-01	k: 1525532	n:1900000
KS ci ratio: 1.392621e-01	ci left: 3.878106e-04	ci right 4.463613e-04	k: 791	n:1900000
TRIL   1900000 perm   1732 sec   (1097 perm/sec)   p_kst 4.163158e-04   p_cons 8.029116e-01   p_joint 2.145263e-03

Joint ci ratio: 6.115436e-02	ci left: 2.080940e-03	ci right 2.212724e-03	k: 4099	n:1910000
Cons ci ratio: 1.405203e-03	ci left: 8.023666e-01	ci right 8.034953e-01	k: 1533599	n:1910000
KS ci ratio: 1.389991e-01	ci left: 3.872961e-04	ci right 4.456497e-04	k: 794	n:1910000
TRIL   1910000 perm   1748 sec   (1093 perm/sec)   p_kst 4.157068e-04   p_cons 8.029314e-01   p_joint 2.146073e-03

Joint ci ratio: 6.102061e-02	ci left: 2.079333e-03	ci right 2.210717e-03	k: 4117	n:1920000
Cons ci ratio: 1.401516e-03	ci left: 8.023731e-01	ci right 8.034989e-01	k: 1541638	n:1920000
KS ci ratio: 1.389119e-01	ci left: 3.857817e-04	ci right 4.438675e-04	k: 795	n:1920000
TRIL   1920000 perm   1764 sec   (1088 perm/sec)   p_kst 4.140625e-04   p_cons 8.029365e-01   p_joint 2.144271e-03

Joint ci ratio: 6.088036e-02	ci left: 2.078254e-03	ci right 2.209257e-03	k: 4136	n:1930000
Cons ci ratio: 1.397804e-03	ci left: 8.023920e-01	ci right 8.035149e-01	k: 1549701	n:1930000
KS ci ratio: 1.383050e-01	ci left: 3.872840e-04	ci right 4.453203e-04	k: 802	n:1930000
TRIL   1930000 perm   1781 sec   (1084 perm/sec)   p_kst 4.155440e-04   p_cons 8.029539e-01   p_joint 2.143005e-03

Joint ci ratio: 6.074108e-02	ci left: 2.077186e-03	ci right 2.207812e-03	k: 4155	n:1940000
Cons ci ratio: 1.394316e-03	ci left: 8.023663e-01	ci right 8.034864e-01	k: 1557678	n:1940000
KS ci ratio: 1.381331e-01	ci left: 3.862829e-04	ci right 4.440914e-04	k: 804	n:1940000
TRIL   1940000 perm   1798 sec   (1079 perm/sec)   p_kst 4.144330e-04   p_cons 8.029268e-01   p_joint 2.141753e-03

Joint ci ratio: 6.058094e-02	ci left: 2.077645e-03	ci right 2.207943e-03	k: 4177	n:1950000
Cons ci ratio: 1.390732e-03	ci left: 8.023687e-01	ci right 8.034858e-01	k: 1565709	n:1950000
KS ci ratio: 1.379619e-01	ci left: 3.852922e-04	ci right 4.428751e-04	k: 806	n:1950000
TRIL   1950000 perm   1814 sec   (1075 perm/sec)   p_kst 4.133333e-04   p_cons 8.029277e-01   p_joint 2.142051e-03

Joint ci ratio: 6.041485e-02	ci left: 2.078602e-03	ci right 2.208590e-03	k: 4200	n:1960000
Cons ci ratio: 1.387129e-03	ci left: 8.023817e-01	ci right 8.034960e-01	k: 1573761	n:1960000
KS ci ratio: 1.374519e-01	ci left: 3.862822e-04	ci right 4.437821e-04	k: 812	n:1960000
TRIL   1960000 perm   1831 sec   (1070 perm/sec)   p_kst 4.142857e-04   p_cons 8.029393e-01   p_joint 2.142857e-03

Joint ci ratio: 6.030021e-02	ci left: 2.076050e-03	ci right 2.205624e-03	k: 4216	n:1970000
Cons ci ratio: 1.383633e-03	ci left: 8.023763e-01	ci right 8.034878e-01	k: 1581777	n:1970000
KS ci ratio: 1.371990e-01	ci left: 3.857919e-04	ci right 4.431046e-04	k: 815	n:1970000
TRIL   1970000 perm   1848 sec   (1066 perm/sec)   p_kst 4.137056e-04   p_cons 8.029325e-01   p_joint 2.140102e-03

Joint ci ratio: 6.010801e-02	ci left: 2.078996e-03	ci right 2.208326e-03	k: 4243	n:1980000
Cons ci ratio: 1.380048e-03	ci left: 8.023978e-01	ci right 8.035064e-01	k: 1589846	n:1980000
KS ci ratio: 1.367805e-01	ci left: 3.862822e-04	ci right 4.434784e-04	k: 820	n:1980000
TRIL   1980000 perm   1864 sec   (1062 perm/sec)   p_kst 4.141414e-04   p_cons 8.029525e-01   p_joint 2.142929e-03

Joint ci ratio: 5.994577e-02	ci left: 2.079933e-03	ci right 2.208960e-03	k: 4266	n:1990000
Cons ci ratio: 1.376643e-03	ci left: 8.023838e-01	ci right 8.034897e-01	k: 1597845	n:1990000
KS ci ratio: 1.363659e-01	ci left: 3.867678e-04	ci right 4.438482e-04	k: 825	n:1990000
TRIL   1990000 perm   1881 sec   (1058 perm/sec)   p_kst 4.145729e-04   p_cons 8.029372e-01   p_joint 2.143719e-03

Joint ci ratio: 5.978483e-02	ci left: 2.080861e-03	ci right 2.209587e-03	k: 4289	n:2000000
Cons ci ratio: 1.373187e-03	ci left: 8.023875e-01	ci right 8.034906e-01	k: 1605879	n:2000000
KS ci ratio: 1.358732e-01	ci left: 3.877318e-04	ci right 4.447311e-04	k: 831	n:2000000
TRIL   2000000 perm   1898 sec   (1054 perm/sec)   p_kst 4.155000e-04   p_cons 8.029395e-01   p_joint 2.144500e-03

Joint ci ratio: 5.963212e-02	ci left: 2.081291e-03	ci right 2.209703e-03	k: 4311	n:2010000
Cons ci ratio: 1.369791e-03	ci left: 8.023832e-01	ci right 8.034836e-01	k: 1613897	n:2010000
KS ci ratio: 1.354668e-01	ci left: 3.882059e-04	ci right 4.450904e-04	k: 836	n:2010000
TRIL   2010000 perm   1915 sec   (1050 perm/sec)   p_kst 4.159204e-04   p_cons 8.029338e-01   p_joint 2.144776e-03

Joint ci ratio: 5.946682e-02	ci left: 2.082691e-03	ci right 2.210822e-03	k: 4335	n:2020000
Cons ci ratio: 1.366437e-03	ci left: 8.023750e-01	ci right 8.034726e-01	k: 1621907	n:2020000
KS ci ratio: 1.349037e-01	ci left: 3.896323e-04	ci right 4.464694e-04	k: 843	n:2020000
TRIL   2020000 perm   1932 sec   (1045 perm/sec)   p_kst 4.173267e-04   p_cons 8.029243e-01   p_joint 2.146040e-03

Joint ci ratio: 5.922127e-02	ci left: 2.089903e-03	ci right 2.217928e-03	k: 4371	n:2030000
Cons ci ratio: 1.363104e-03	ci left: 8.023679e-01	ci right 8.034628e-01	k: 1629919	n:2030000
KS ci ratio: 1.341900e-01	ci left: 3.919972e-04	ci right 4.488527e-04	k: 852	n:2030000
TRIL   2030000 perm   1950 sec   (1041 perm/sec)   p_kst 4.197044e-04   p_cons 8.029158e-01   p_joint 2.153202e-03

Joint ci ratio: 5.912679e-02	ci left: 2.086419e-03	ci right 2.214020e-03	k: 4385	n:2040000
Cons ci ratio: 1.359797e-03	ci left: 8.023603e-01	ci right 8.034526e-01	k: 1637930	n:2040000
KS ci ratio: 1.339547e-01	ci left: 3.914969e-04	ci right 4.481723e-04	k: 855	n:2040000
TRIL   2040000 perm   1968 sec   (1037 perm/sec)   p_kst 4.191176e-04   p_cons 8.029069e-01   p_joint 2.149510e-03

Joint ci ratio: 5.895894e-02	ci left: 2.088257e-03	ci right 2.215595e-03	k: 4410	n:2050000
Cons ci ratio: 1.356425e-03	ci left: 8.023738e-01	ci right 8.034634e-01	k: 1645984	n:2050000
KS ci ratio: 1.335652e-01	ci left: 3.919446e-04	ci right 4.485067e-04	k: 860	n:2050000
TRIL   2050000 perm   1985 sec   (1033 perm/sec)   p_kst 4.195122e-04   p_cons 8.029190e-01   p_joint 2.151220e-03

Joint ci ratio: 5.878588e-02	ci left: 2.090555e-03	ci right 2.217647e-03	k: 4436	n:2060000
Cons ci ratio: 1.353172e-03	ci left: 8.023648e-01	ci right 8.034518e-01	k: 1653992	n:2060000
KS ci ratio: 1.331790e-01	ci left: 3.923881e-04	ci right 4.488376e-04	k: 865	n:2060000
TRIL   2060000 perm   2003 sec   (1028 perm/sec)   p_kst 4.199029e-04   p_cons 8.029087e-01   p_joint 2.153398e-03

Joint ci ratio: 5.862092e-02	ci left: 2.092356e-03	ci right 2.219188e-03	k: 4461	n:2070000
Cons ci ratio: 1.349929e-03	ci left: 8.023593e-01	ci right 8.034437e-01	k: 1662007	n:2070000
KS ci ratio: 1.328725e-01	ci left: 3.923606e-04	ci right 4.486659e-04	k: 869	n:2070000
TRIL   2070000 perm   2021 sec   (1024 perm/sec)   p_kst 4.198068e-04   p_cons 8.029019e-01   p_joint 2.155072e-03

Joint ci ratio: 5.850308e-02	ci left: 2.090824e-03	ci right 2.217299e-03	k: 4479	n:2080000
Cons ci ratio: 1.346752e-03	ci left: 8.023438e-01	ci right 8.034255e-01	k: 1670001	n:2080000
KS ci ratio: 1.325681e-01	ci left: 3.923335e-04	ci right 4.484958e-04	k: 873	n:2080000
TRIL   2080000 perm   2038 sec   (1021 perm/sec)   p_kst 4.197115e-04   p_cons 8.028851e-01   p_joint 2.153365e-03

Joint ci ratio: 5.836645e-02	ci left: 2.090721e-03	ci right 2.216885e-03	k: 4500	n:2090000
Cons ci ratio: 1.343542e-03	ci left: 8.023413e-01	ci right 8.034205e-01	k: 1678022	n:2090000
KS ci ratio: 1.324924e-01	ci left: 3.909189e-04	ci right 4.468442e-04	k: 874	n:2090000
TRIL   2090000 perm   2056 sec   (1016 perm/sec)   p_kst 4.181818e-04   p_cons 8.028813e-01   p_joint 2.153110e-03

Joint ci ratio: 5.825660e-02	ci left: 2.088742e-03	ci right 2.214542e-03	k: 4517	n:2100000
Cons ci ratio: 1.340355e-03	ci left: 8.023389e-01	ci right 8.034155e-01	k: 1686043	n:2100000
KS ci ratio: 1.321906e-01	ci left: 3.908991e-04	ci right 4.466842e-04	k: 878	n:2100000
TRIL   2100000 perm   2074 sec   (1013 perm/sec)   p_kst 4.180952e-04   p_cons 8.028776e-01   p_joint 2.150952e-03

Joint ci ratio: 5.815380e-02	ci left: 2.086316e-03	ci right 2.211740e-03	k: 4533	n:2110000
Cons ci ratio: 1.337098e-03	ci left: 8.023583e-01	ci right 8.034323e-01	k: 1694110	n:2110000
KS ci ratio: 1.319656e-01	ci left: 3.904213e-04	ci right 4.460359e-04	k: 881	n:2110000
TRIL   2110000 perm   2091 sec   (1009 perm/sec)   p_kst 4.175355e-04   p_cons 8.028957e-01   p_joint 2.148341e-03

Joint ci ratio: 5.796860e-02	ci left: 2.089955e-03	ci right 2.215185e-03	k: 4562	n:2120000
Cons ci ratio: 1.333975e-03	ci left: 8.023516e-01	ci right 8.034231e-01	k: 1702122	n:2120000
KS ci ratio: 1.313711e-01	ci left: 3.922290e-04	ci right 4.478298e-04	k: 889	n:2120000
TRIL   2120000 perm   2110 sec   (1005 perm/sec)   p_kst 4.193396e-04   p_cons 8.028877e-01   p_joint 2.151887e-03

Joint ci ratio: 5.779147e-02	ci left: 2.093099e-03	ci right 2.218120e-03	k: 4590	n:2130000
Cons ci ratio: 1.330770e-03	ci left: 8.023693e-01	ci right 8.034383e-01	k: 1710186	n:2130000
KS ci ratio: 1.311503e-01	ci left: 3.917497e-04	ci right 4.471820e-04	k: 892	n:2130000
TRIL   2130000 perm   2128 sec   (1001 perm/sec)   p_kst 4.187793e-04   p_cons 8.029042e-01   p_joint 2.154930e-03

Joint ci ratio: 5.765976e-02	ci left: 2.092989e-03	ci right 2.217710e-03	k: 4611	n:2140000
Cons ci ratio: 1.327663e-03	ci left: 8.023692e-01	ci right 8.034356e-01	k: 1718212	n:2140000
KS ci ratio: 1.307846e-01	ci left: 3.921790e-04	ci right 4.475053e-04	k: 897	n:2140000
TRIL   2140000 perm   2146 sec   (997 perm/sec)   p_kst 4.191589e-04   p_cons 8.029028e-01   p_joint 2.154673e-03

Joint ci ratio: 5.745442e-02	ci left: 2.098382e-03	ci right 2.222965e-03	k: 4644	n:2150000
Cons ci ratio: 1.324568e-03	ci left: 8.023713e-01	ci right 8.034353e-01	k: 1726243	n:2150000
KS ci ratio: 1.303498e-01	ci left: 3.930545e-04	ci right 4.483057e-04	k: 903	n:2150000
TRIL   2150000 perm   2164 sec   (993 perm/sec)   p_kst 4.200000e-04   p_cons 8.029037e-01   p_joint 2.160000e-03

Joint ci ratio: 5.733731e-02	ci left: 2.097338e-03	ci right 2.221596e-03	k: 4663	n:2160000
Cons ci ratio: 1.321621e-03	ci left: 8.023434e-01	ci right 8.034049e-01	k: 1734209	n:2160000
KS ci ratio: 1.300624e-01	ci left: 3.930263e-04	ci right 4.481423e-04	k: 907	n:2160000
TRIL   2160000 perm   2183 sec   (990 perm/sec)   p_kst 4.199074e-04   p_cons 8.028745e-01   p_joint 2.158796e-03

Joint ci ratio: 5.723316e-02	ci left: 2.095394e-03	ci right 2.219304e-03	k: 4680	n:2170000
Cons ci ratio: 1.318594e-03	ci left: 8.023392e-01	ci right 8.033983e-01	k: 1742226	n:2170000
KS ci ratio: 1.299195e-01	ci left: 3.921068e-04	ci right 4.470288e-04	k: 909	n:2170000
TRIL   2170000 perm   2201 sec   (986 perm/sec)   p_kst 4.188940e-04   p_cons 8.028691e-01   p_joint 2.156682e-03

Joint ci ratio: 5.708089e-02	ci left: 2.097087e-03	ci right 2.220756e-03	k: 4705	n:2180000
Cons ci ratio: 1.315431e-03	ci left: 8.023731e-01	ci right 8.034297e-01	k: 1750326	n:2180000
KS ci ratio: 1.294932e-01	ci left: 3.929712e-04	ci right 4.478197e-04	k: 915	n:2180000
TRIL   2180000 perm   2219 sec   (982 perm/sec)   p_kst 4.197248e-04   p_cons 8.029018e-01   p_joint 2.158257e-03

Joint ci ratio: 5.695396e-02	ci left: 2.096963e-03	ci right 2.220341e-03	k: 4726	n:2190000
Cons ci ratio: 1.312441e-03	ci left: 8.023702e-01	ci right 8.034244e-01	k: 1758346	n:2190000
KS ci ratio: 1.290011e-01	ci left: 3.942698e-04	ci right 4.490745e-04	k: 922	n:2190000
TRIL   2190000 perm   2237 sec   (979 perm/sec)   p_kst 4.210046e-04   p_cons 8.028977e-01   p_joint 2.157991e-03

Joint ci ratio: 5.681589e-02	ci left: 2.097737e-03	ci right 2.220852e-03	k: 4749	n:2200000
Cons ci ratio: 1.309421e-03	ci left: 8.023796e-01	ci right 8.034314e-01	k: 1766393	n:2200000
KS ci ratio: 1.288617e-01	ci left: 3.933574e-04	ci right 4.479716e-04	k: 924	n:2200000
TRIL   2200000 perm   2256 sec   (975 perm/sec)   p_kst 4.200000e-04   p_cons 8.029059e-01   p_joint 2.158636e-03

Joint ci ratio: 5.672648e-02	ci left: 2.094936e-03	ci right 2.217686e-03	k: 4764	n:2210000
Cons ci ratio: 1.306427e-03	ci left: 8.023876e-01	ci right 8.034370e-01	k: 1774437	n:2210000
KS ci ratio: 1.287227e-01	ci left: 3.924533e-04	ci right 4.468788e-04	k: 926	n:2210000
TRIL   2210000 perm   2274 sec   (972 perm/sec)   p_kst 4.190045e-04   p_cons 8.029127e-01   p_joint 2.155656e-03

Joint ci ratio: 5.660190e-02	ci left: 2.094825e-03	ci right 2.217290e-03	k: 4785	n:2220000
Cons ci ratio: 1.303532e-03	ci left: 8.023765e-01	ci right 8.034236e-01	k: 1782439	n:2220000
KS ci ratio: 1.284458e-01	ci left: 3.924294e-04	ci right 4.467255e-04	k: 930	n:2220000
TRIL   2220000 perm   2292 sec   (969 perm/sec)   p_kst 4.189189e-04   p_cons 8.029005e-01   p_joint 2.155405e-03

Joint ci ratio: 5.649580e-02	ci left: 2.093389e-03	ci right 2.215533e-03	k: 4803	n:2230000
Cons ci ratio: 1.300560e-03	ci left: 8.023889e-01	ci right 8.034336e-01	k: 1790493	n:2230000
KS ci ratio: 1.281023e-01	ci left: 3.928398e-04	ci right 4.470363e-04	k: 935	n:2230000
TRIL   2230000 perm   2310 sec   (965 perm/sec)   p_kst 4.192825e-04   p_cons 8.029117e-01   p_joint 2.153812e-03

Joint ci ratio: 5.639030e-02	ci left: 2.091966e-03	ci right 2.213791e-03	k: 4821	n:2240000
Cons ci ratio: 1.297659e-03	ci left: 8.023887e-01	ci right 8.034310e-01	k: 1798519	n:2240000
KS ci ratio: 1.280340e-01	ci left: 3.915182e-04	ci right 4.455014e-04	k: 936	n:2240000
TRIL   2240000 perm   2329 sec   (962 perm/sec)   p_kst 4.178571e-04   p_cons 8.029103e-01   p_joint 2.152232e-03

Joint ci ratio: 5.622721e-02	ci left: 2.094937e-03	ci right 2.216572e-03	k: 4849	n:2250000
Cons ci ratio: 1.294716e-03	ci left: 8.024036e-01	ci right 8.034436e-01	k: 1806579	n:2250000
KS ci ratio: 1.275583e-01	ci left: 3.927898e-04	ci right 4.467319e-04	k: 943	n:2250000
TRIL   2250000 perm   2348 sec   (958 perm/sec)   p_kst 4.191111e-04   p_cons 8.029240e-01   p_joint 2.155111e-03

Joint ci ratio: 5.609434e-02	ci left: 2.095702e-03	ci right 2.217084e-03	k: 4872	n:2260000
Cons ci ratio: 1.291824e-03	ci left: 8.024109e-01	ci right 8.034485e-01	k: 1814622	n:2260000
KS ci ratio: 1.274235e-01	ci left: 3.919085e-04	ci right 4.456683e-04	k: 945	n:2260000
TRIL   2260000 perm   2367 sec   (955 perm/sec)   p_kst 4.181416e-04   p_cons 8.029301e-01   p_joint 2.155752e-03

Joint ci ratio: 5.593951e-02	ci left: 2.098197e-03	ci right 2.219378e-03	k: 4899	n:2270000
Cons ci ratio: 1.288995e-03	ci left: 8.024070e-01	ci right 8.034424e-01	k: 1822640	n:2270000
KS ci ratio: 1.271550e-01	ci left: 3.918880e-04	ci right 4.455232e-04	k: 949	n:2270000
TRIL   2270000 perm   2386 sec   (951 perm/sec)   p_kst 4.180617e-04   p_cons 8.029251e-01   p_joint 2.158150e-03

Joint ci ratio: 5.587126e-02	ci left: 2.094184e-03	ci right 2.214981e-03	k: 4911	n:2280000
Cons ci ratio: 1.286328e-03	ci left: 8.023681e-01	ci right 8.034013e-01	k: 1830578	n:2280000
KS ci ratio: 1.270882e-01	ci left: 3.905938e-04	ci right 4.440217e-04	k: 950	n:2280000
TRIL   2280000 perm   2405 sec   (948 perm/sec)   p_kst 4.166667e-04   p_cons 8.028851e-01   p_joint 2.153947e-03

Joint ci ratio: 5.575788e-02	ci left: 2.093651e-03	ci right 2.214164e-03	k: 4931	n:2290000
Cons ci ratio: 1.283467e-03	ci left: 8.023815e-01	ci right 8.034125e-01	k: 1838635	n:2290000
KS ci ratio: 1.266229e-01	ci left: 3.918480e-04	ci right 4.452365e-04	k: 957	n:2290000
TRIL   2290000 perm   2424 sec   (945 perm/sec)   p_kst 4.179039e-04   p_cons 8.028974e-01   p_joint 2.153275e-03

Joint ci ratio: 5.561144e-02	ci left: 2.095695e-03	ci right 2.215999e-03	k: 4957	n:2300000
Cons ci ratio: 1.280779e-03	ci left: 8.023566e-01	ci right 8.033853e-01	k: 1846604	n:2300000
KS ci ratio: 1.264252e-01	ci left: 3.914073e-04	ci right 4.446463e-04	k: 960	n:2300000
TRIL   2300000 perm   2444 sec   (941 perm/sec)   p_kst 4.173913e-04   p_cons 8.028713e-01   p_joint 2.155217e-03

Joint ci ratio: 5.549404e-02	ci left: 2.095588e-03	ci right 2.215623e-03	k: 4978	n:2310000
Cons ci ratio: 1.277960e-03	ci left: 8.023686e-01	ci right 8.033951e-01	k: 1854658	n:2310000
KS ci ratio: 1.260975e-01	ci left: 3.918091e-04	ci right 4.449542e-04	k: 965	n:2310000
TRIL   2310000 perm   2463 sec   (938 perm/sec)   p_kst 4.177489e-04   p_cons 8.028823e-01   p_joint 2.154978e-03

Joint ci ratio: 5.543854e-02	ci left: 2.090805e-03	ci right 2.210443e-03	k: 4988	n:2320000
Cons ci ratio: 1.275337e-03	ci left: 8.023362e-01	ci right 8.033605e-01	k: 1862609	n:2320000
KS ci ratio: 1.259022e-01	ci left: 3.913726e-04	ci right 4.443702e-04	k: 968	n:2320000
TRIL   2320000 perm   2482 sec   (935 perm/sec)   p_kst 4.172414e-04   p_cons 8.028487e-01   p_joint 2.150000e-03

Joint ci ratio: 5.526698e-02	ci left: 2.094953e-03	ci right 2.214445e-03	k: 5019	n:2330000
Cons ci ratio: 1.272619e-03	ci left: 8.023319e-01	ci right 8.033540e-01	k: 1870625	n:2330000
KS ci ratio: 1.257078e-01	ci left: 3.909399e-04	ci right 4.437911e-04	k: 971	n:2330000
TRIL   2330000 perm   2502 sec   (931 perm/sec)   p_kst 4.167382e-04   p_cons 8.028433e-01   p_joint 2.154077e-03

Joint ci ratio: 5.514627e-02	ci left: 2.095272e-03	ci right 2.214513e-03	k: 5041	n:2340000
Cons ci ratio: 1.269930e-03	ci left: 8.023247e-01	ci right 8.033446e-01	k: 1878634	n:2340000
KS ci ratio: 1.253216e-01	ci left: 3.917528e-04	ci right 4.445391e-04	k: 977	n:2340000
TRIL   2340000 perm   2522 sec   (928 perm/sec)   p_kst 4.175214e-04   p_cons 8.028350e-01   p_joint 2.154274e-03

Joint ci ratio: 5.506996e-02	ci left: 2.092231e-03	ci right 2.211129e-03	k: 5055	n:2350000
Cons ci ratio: 1.267272e-03	ci left: 8.023141e-01	ci right 8.033319e-01	k: 1886635	n:2350000
KS ci ratio: 1.252576e-01	ci left: 3.904980e-04	ci right 4.430863e-04	k: 978	n:2350000
TRIL   2350000 perm   2542 sec   (925 perm/sec)   p_kst 4.161702e-04   p_cons 8.028234e-01   p_joint 2.151064e-03

Joint ci ratio: 5.492885e-02	ci left: 2.094231e-03	ci right 2.212928e-03	k: 5081	n:2360000
Cons ci ratio: 1.264622e-03	ci left: 8.023058e-01	ci right 8.033214e-01	k: 1894641	n:2360000
KS ci ratio: 1.250025e-01	ci left: 3.904852e-04	ci right 4.429568e-04	k: 982	n:2360000
TRIL   2360000 perm   2561 sec   (921 perm/sec)   p_kst 4.161017e-04   p_cons 8.028140e-01   p_joint 2.152966e-03

Joint ci ratio: 5.480496e-02	ci left: 2.094966e-03	ci right 2.213428e-03	k: 5104	n:2370000
Cons ci ratio: 1.261999e-03	ci left: 8.022950e-01	ci right 8.033085e-01	k: 1902641	n:2370000
KS ci ratio: 1.249391e-01	ci left: 3.892463e-04	ci right 4.415229e-04	k: 983	n:2370000
TRIL   2370000 perm   2580 sec   (919 perm/sec)   p_kst 4.147679e-04   p_cons 8.028021e-01   p_joint 2.153586e-03

Joint ci ratio: 5.463920e-02	ci left: 2.099011e-03	ci right 2.217332e-03	k: 5135	n:2380000
Cons ci ratio: 1.259348e-03	ci left: 8.022952e-01	ci right 8.033066e-01	k: 1910667	n:2380000
KS ci ratio: 1.246228e-01	ci left: 3.896461e-04	ci right 4.418341e-04	k: 988	n:2380000
TRIL   2380000 perm   2600 sec   (916 perm/sec)   p_kst 4.151261e-04   p_cons 8.028013e-01   p_joint 2.157563e-03

Joint ci ratio: 5.452255e-02	ci left: 2.099308e-03	ci right 2.217385e-03	k: 5157	n:2390000
Cons ci ratio: 1.256574e-03	ci left: 8.023306e-01	ci right 8.033398e-01	k: 1918777	n:2390000
KS ci ratio: 1.243090e-01	ci left: 3.900427e-04	ci right 4.421426e-04	k: 993	n:2390000
TRIL   2390000 perm   2620 sec   (912 perm/sec)   p_kst 4.154812e-04   p_cons 8.028356e-01   p_joint 2.157741e-03

Joint ci ratio: 5.444879e-02	ci left: 2.096315e-03	ci right 2.214059e-03	k: 5171	n:2400000
Cons ci ratio: 1.253844e-03	ci left: 8.023594e-01	ci right 8.033665e-01	k: 1926872	n:2400000
KS ci ratio: 1.240596e-01	ci left: 3.900324e-04	ci right 4.420188e-04	k: 997	n:2400000
TRIL   2400000 perm   2639 sec   (909 perm/sec)   p_kst 4.154167e-04   p_cons 8.028633e-01   p_joint 2.154583e-03

Joint ci ratio: 6.095985e-02	ci left: 1.660640e-03	ci right 1.765460e-03	k: 4127	n:2410000
Cons ci ratio: 1.251218e-03	ci left: 8.023660e-01	ci right 8.033710e-01	k: 1934914	n:2410000
KS ci ratio: 1.237500e-01	ci left: 3.904244e-04	ci right 4.423236e-04	k: 1002	n:2410000
TRIL   2410000 perm   2659 sec   (907 perm/sec)   p_kst 4.157676e-04   p_cons 8.028689e-01   p_joint 1.712448e-03

Joint ci ratio: 6.080533e-02	ci left: 1.662323e-03	ci right 1.766974e-03	k: 4148	n:2420000
Cons ci ratio: 1.248626e-03	ci left: 8.023680e-01	ci right 8.033709e-01	k: 1942945	n:2420000
KS ci ratio: 1.235653e-01	ci left: 3.900124e-04	ci right 4.417738e-04	k: 1005	n:2420000
TRIL   2420000 perm   2679 sec   (903 perm/sec)   p_kst 4.152893e-04   p_cons 8.028698e-01   p_joint 1.714050e-03

Joint ci ratio: 6.069574e-02	ci left: 1.661561e-03	ci right 1.765969e-03	k: 4163	n:2430000
Cons ci ratio: 1.246123e-03	ci left: 8.023515e-01	ci right 8.033523e-01	k: 1950931	n:2430000
KS ci ratio: 1.233815e-01	ci left: 3.896038e-04	ci right 4.412285e-04	k: 1008	n:2430000
TRIL   2430000 perm   2699 sec   (900 perm/sec)   p_kst 4.148148e-04   p_cons 8.028523e-01   p_joint 1.713169e-03

Joint ci ratio: 6.055046e-02	ci left: 1.662824e-03	ci right 1.767053e-03	k: 4183	n:2440000
Cons ci ratio: 1.243605e-03	ci left: 8.023429e-01	ci right 8.033417e-01	k: 1958936	n:2440000
KS ci ratio: 1.230770e-01	ci left: 3.899931e-04	ci right 4.415325e-04	k: 1013	n:2440000
TRIL   2440000 perm   2719 sec   (897 perm/sec)   p_kst 4.151639e-04   p_cons 8.028426e-01   p_joint 1.714344e-03

Joint ci ratio: 6.042783e-02	ci left: 1.662871e-03	ci right 1.766884e-03	k: 4200	n:2450000
Cons ci ratio: 1.240973e-03	ci left: 8.023674e-01	ci right 8.033641e-01	k: 1967022	n:2450000
KS ci ratio: 1.227144e-01	ci left: 3.907750e-04	ci right 4.422546e-04	k: 1019	n:2450000
TRIL   2450000 perm   2740 sec   (894 perm/sec)   p_kst 4.159184e-04   p_cons 8.028661e-01   p_joint 1.714286e-03

Joint ci ratio: 6.031310e-02	ci left: 1.662517e-03	ci right 1.766304e-03	k: 4216	n:2460000
Cons ci ratio: 1.238536e-03	ci left: 8.023458e-01	ci right 8.033405e-01	k: 1974995	n:2460000
KS ci ratio: 1.225943e-01	ci left: 3.899745e-04	ci right 4.412947e-04	k: 1021	n:2460000
TRIL   2460000 perm   2760 sec   (891 perm/sec)   p_kst 4.150407e-04   p_cons 8.028435e-01   p_joint 1.713821e-03

Joint ci ratio: 6.012082e-02	ci left: 1.666553e-03	ci right 1.770248e-03	k: 4243	n:2470000
Cons ci ratio: 1.236022e-03	ci left: 8.023478e-01	ci right 8.033405e-01	k: 1983026	n:2470000
KS ci ratio: 1.221172e-01	ci left: 3.915355e-04	ci right 4.428460e-04	k: 1029	n:2470000
TRIL   2470000 perm   2781 sec   (888 perm/sec)   p_kst 4.165992e-04   p_cons 8.028445e-01   p_joint 1.717814e-03

Joint ci ratio: 6.002194e-02	ci left: 1.665393e-03	ci right 1.768840e-03	k: 4257	n:2480000
Cons ci ratio: 1.233607e-03	ci left: 8.023285e-01	ci right 8.033192e-01	k: 1991004	n:2480000
KS ci ratio: 1.218808e-01	ci left: 3.915204e-04	ci right 4.427225e-04	k: 1033	n:2480000
TRIL   2480000 perm   2801 sec   (886 perm/sec)   p_kst 4.165323e-04   p_cons 8.028242e-01   p_joint 1.716532e-03

Joint ci ratio: 5.990950e-02	ci left: 1.665034e-03	ci right 1.768259e-03	k: 4273	n:2490000
Cons ci ratio: 1.231154e-03	ci left: 8.023225e-01	ci right 8.033113e-01	k: 1999015	n:2490000
KS ci ratio: 1.218219e-01	ci left: 3.903374e-04	ci right 4.413583e-04	k: 1034	n:2490000
TRIL   2490000 perm   2822 sec   (882 perm/sec)   p_kst 4.152610e-04   p_cons 8.028173e-01   p_joint 1.716064e-03

Joint ci ratio: 5.329173e-02	ci left: 2.102039e-03	ci right 2.217519e-03	k: 5398	n:2500000
Cons ci ratio: 1.228615e-03	ci left: 8.023427e-01	ci right 8.033294e-01	k: 2007091	n:2500000
KS ci ratio: 1.214120e-01	ci left: 3.914908e-04	ci right 4.424780e-04	k: 1041	n:2500000
TRIL   2500000 perm   2843 sec   (879 perm/sec)   p_kst 4.164000e-04   p_cons 8.028364e-01   p_joint 2.159200e-03

Joint ci ratio: 5.318348e-02	ci left: 2.102313e-03	ci right 2.217566e-03	k: 5420	n:2510000
Cons ci ratio: 1.226253e-03	ci left: 8.023212e-01	ci right 8.033060e-01	k: 2015063	n:2510000
KS ci ratio: 1.212957e-01	ci left: 3.907037e-04	ci right 4.415361e-04	k: 1043	n:2510000
TRIL   2510000 perm   2864 sec   (876 perm/sec)   p_kst 4.155378e-04   p_cons 8.028139e-01   p_joint 2.159363e-03

Joint ci ratio: 5.309055e-02	ci left: 2.101410e-03	ci right 2.216406e-03	k: 5439	n:2520000
Cons ci ratio: 1.223768e-03	ci left: 8.023348e-01	ci right 8.033177e-01	k: 2023123	n:2520000
KS ci ratio: 1.210640e-01	ci left: 3.906925e-04	ci right 4.414194e-04	k: 1047	n:2520000
TRIL   2520000 perm   2885 sec   (873 perm/sec)   p_kst 4.154762e-04   p_cons 8.028266e-01   p_joint 2.158333e-03

Joint ci ratio: 5.294468e-02	ci left: 2.104805e-03	ci right 2.219660e-03	k: 5469	n:2530000
Cons ci ratio: 1.221296e-03	ci left: 8.023491e-01	ci right 8.033300e-01	k: 2031185	n:2530000
KS ci ratio: 1.207189e-01	ci left: 3.914481e-04	ci right 4.421179e-04	k: 1053	n:2530000
TRIL   2530000 perm   2906 sec   (871 perm/sec)   p_kst 4.162055e-04   p_cons 8.028399e-01   p_joint 2.161660e-03

Joint ci ratio: 5.282889e-02	ci left: 2.105842e-03	ci right 2.220495e-03	k: 5493	n:2540000
Cons ci ratio: 1.218905e-03	ci left: 8.023460e-01	ci right 8.033250e-01	k: 2039203	n:2540000
KS ci ratio: 1.206617e-01	ci left: 3.902888e-04	ci right 4.407829e-04	k: 1054	n:2540000
TRIL   2540000 perm   2927 sec   (868 perm/sec)   p_kst 4.149606e-04   p_cons 8.028358e-01   p_joint 2.162598e-03

Joint ci ratio: 5.275698e-02	ci left: 2.103388e-03	ci right 2.217747e-03	k: 5508	n:2550000
Cons ci ratio: 1.216501e-03	ci left: 8.023500e-01	ci right 8.033270e-01	k: 2047239	n:2550000
KS ci ratio: 1.203768e-01	ci left: 3.906599e-04	ci right 4.410742e-04	k: 1059	n:2550000
TRIL   2550000 perm   2949 sec   (865 perm/sec)   p_kst 4.152941e-04   p_cons 8.028388e-01   p_joint 2.160000e-03

Joint ci ratio: 5.265195e-02	ci left: 2.103652e-03	ci right 2.217791e-03	k: 5530	n:2560000
Cons ci ratio: 1.214083e-03	ci left: 8.023613e-01	ci right 8.033364e-01	k: 2055294	n:2560000
KS ci ratio: 1.202068e-01	ci left: 3.902705e-04	ci right 4.405583e-04	k: 1062	n:2560000
TRIL   2560000 perm   2970 sec   (862 perm/sec)   p_kst 4.148438e-04   p_cons 8.028492e-01   p_joint 2.160156e-03

Joint ci ratio: 5.891831e-02	ci left: 1.668787e-03	ci right 1.770474e-03	k: 4418	n:2570000
Cons ci ratio: 1.211681e-03	ci left: 8.023722e-01	ci right 8.033454e-01	k: 2063348	n:2570000
KS ci ratio: 1.200940e-01	ci left: 3.895067e-04	ci right 4.396457e-04	k: 1064	n:2570000
TRIL   2570000 perm   2991 sec   (859 perm/sec)   p_kst 4.140078e-04   p_cons 8.028591e-01   p_joint 1.719066e-03

Joint ci ratio: 5.241550e-02	ci left: 2.106470e-03	ci right 2.220233e-03	k: 5580	n:2580000
Cons ci ratio: 1.209315e-03	ci left: 8.023772e-01	ci right 8.033485e-01	k: 2071387	n:2580000
KS ci ratio: 1.199252e-01	ci left: 3.891249e-04	ci right 4.391393e-04	k: 1067	n:2580000
TRIL   2580000 perm   3013 sec   (856 perm/sec)   p_kst 4.135659e-04   p_cons 8.028632e-01   p_joint 2.162791e-03

Joint ci ratio: 5.227510e-02	ci left: 2.109769e-03	ci right 2.223395e-03	k: 5610	n:2590000
Cons ci ratio: 1.206907e-03	ci left: 8.023968e-01	ci right 8.033662e-01	k: 2079464	n:2590000
KS ci ratio: 1.197013e-01	ci left: 3.891206e-04	ci right 4.390345e-04	k: 1071	n:2590000
TRIL   2590000 perm   3034 sec   (854 perm/sec)   p_kst 4.135135e-04   p_cons 8.028819e-01   p_joint 2.166023e-03

Joint ci ratio: 5.850917e-02	ci left: 1.673028e-03	ci right 1.774241e-03	k: 4480	n:2600000
Cons ci ratio: 1.204544e-03	ci left: 8.024082e-01	ci right 8.033757e-01	k: 2087520	n:2600000
KS ci ratio: 1.194786e-01	ci left: 3.891164e-04	ci right 4.389303e-04	k: 1075	n:2600000
TRIL   2600000 perm   3055 sec   (851 perm/sec)   p_kst 4.134615e-04   p_cons 8.028923e-01   p_joint 1.723077e-03

Joint ci ratio: 5.836602e-02	ci left: 1.674924e-03	ci right 1.775995e-03	k: 4502	n:2610000
Cons ci ratio: 1.202288e-03	ci left: 8.023950e-01	ci right 8.033607e-01	k: 2095512	n:2610000
KS ci ratio: 1.191468e-01	ci left: 3.898558e-04	ci right 4.396160e-04	k: 1081	n:2610000
TRIL   2610000 perm   3078 sec   (848 perm/sec)   p_kst 4.141762e-04   p_cons 8.028782e-01   p_joint 1.724904e-03

Joint ci ratio: 5.823035e-02	ci left: 1.676429e-03	ci right 1.777349e-03	k: 4523	n:2620000
Cons ci ratio: 1.200002e-03	ci left: 8.023929e-01	ci right 8.033568e-01	k: 2103533	n:2620000
KS ci ratio: 1.189820e-01	ci left: 3.894788e-04	ci right 4.391172e-04	k: 1084	n:2620000
TRIL   2620000 perm   3099 sec   (845 perm/sec)   p_kst 4.137405e-04   p_cons 8.028752e-01   p_joint 1.726336e-03

Joint ci ratio: 5.813408e-02	ci left: 1.675675e-03	ci right 1.776377e-03	k: 4538	n:2630000
Cons ci ratio: 1.197658e-03	ci left: 8.024099e-01	ci right 8.033719e-01	k: 2111604	n:2630000
KS ci ratio: 1.187087e-01	ci left: 3.898425e-04	ci right 4.394052e-04	k: 1089	n:2630000
TRIL   2630000 perm   3121 sec   (843 perm/sec)   p_kst 4.140684e-04   p_cons 8.028913e-01   p_joint 1.725475e-03

Joint ci ratio: 5.804467e-02	ci left: 1.674554e-03	ci right 1.775029e-03	k: 4552	n:2640000
Cons ci ratio: 1.195386e-03	ci left: 8.024113e-01	ci right 8.033714e-01	k: 2119634	n:2640000
KS ci ratio: 1.184374e-01	ci left: 3.902036e-04	ci right 4.396909e-04	k: 1094	n:2640000
TRIL   2640000 perm   3143 sec   (840 perm/sec)   p_kst 4.143939e-04   p_cons 8.028917e-01   p_joint 1.724242e-03

Joint ci ratio: 5.168888e-02	ci left: 2.109675e-03	ci right 2.221984e-03	k: 5738	n:2650000
Cons ci ratio: 1.193081e-03	ci left: 8.024247e-01	ci right 8.033830e-01	k: 2127696	n:2650000
KS ci ratio: 1.183294e-01	ci left: 3.894635e-04	ci right 4.388087e-04	k: 1096	n:2650000
TRIL   2650000 perm   3165 sec   (837 perm/sec)   p_kst 4.135849e-04   p_cons 8.029042e-01   p_joint 2.165283e-03

Joint ci ratio: 5.159906e-02	ci left: 2.109165e-03	ci right 2.221246e-03	k: 5758	n:2660000
Cons ci ratio: 1.190920e-03	ci left: 8.024034e-01	ci right 8.033599e-01	k: 2135666	n:2660000
KS ci ratio: 1.182218e-01	ci left: 3.887289e-04	ci right 4.379332e-04	k: 1098	n:2660000
TRIL   2660000 perm   3188 sec   (835 perm/sec)   p_kst 4.127820e-04   p_cons 8.028820e-01   p_joint 2.164662e-03

Joint ci ratio: 5.152312e-02	ci left: 2.107551e-03	ci right 2.219376e-03	k: 5775	n:2670000
Cons ci ratio: 1.188671e-03	ci left: 8.024088e-01	ci right 8.033636e-01	k: 2143707	n:2670000
KS ci ratio: 1.180072e-01	ci left: 3.887269e-04	ci right 4.378354e-04	k: 1102	n:2670000
TRIL   2670000 perm   3210 sec   (832 perm/sec)   p_kst 4.127341e-04   p_cons 8.028865e-01   p_joint 2.162921e-03

Joint ci ratio: 5.141638e-02	ci left: 2.108527e-03	ci right 2.220165e-03	k: 5799	n:2680000
Cons ci ratio: 1.186440e-03	ci left: 8.024128e-01	ci right 8.033657e-01	k: 2151744	n:2680000
KS ci ratio: 1.178471e-01	ci left: 3.883628e-04	ci right 4.373541e-04	k: 1105	n:2680000
TRIL   2680000 perm   3232 sec   (829 perm/sec)   p_kst 4.123134e-04   p_cons 8.028896e-01   p_joint 2.163806e-03

Joint ci ratio: 5.133240e-02	ci left: 2.107661e-03	ci right 2.219066e-03	k: 5818	n:2690000
Cons ci ratio: 1.184128e-03	ci left: 8.024416e-01	ci right 8.033927e-01	k: 2159848	n:2690000
KS ci ratio: 1.175816e-01	ci left: 3.887231e-04	ci right 4.376417e-04	k: 1110	n:2690000
TRIL   2690000 perm   3254 sec   (827 perm/sec)   p_kst 4.126394e-04   p_cons 8.029175e-01   p_joint 2.162825e-03

Joint ci ratio: 5.121806e-02	ci left: 2.109361e-03	ci right 2.220600e-03	k: 5844	n:2700000
Cons ci ratio: 1.181965e-03	ci left: 8.024339e-01	ci right 8.033832e-01	k: 2167854	n:2700000
KS ci ratio: 1.171604e-01	ci left: 3.901594e-04	ci right 4.390707e-04	k: 1118	n:2700000
TRIL   2700000 perm   3276 sec   (824 perm/sec)   p_kst 4.140741e-04   p_cons 8.029089e-01   p_joint 2.164444e-03

Joint ci ratio: 5.114378e-02	ci left: 2.107770e-03	ci right 2.218760e-03	k: 5861	n:2710000
Cons ci ratio: 1.179877e-03	ci left: 8.024092e-01	ci right 8.033569e-01	k: 2175814	n:2710000
KS ci ratio: 1.170559e-01	ci left: 3.894360e-04	ci right 4.382101e-04	k: 1120	n:2710000
TRIL   2710000 perm   3299 sec   (822 perm/sec)   p_kst 4.132841e-04   p_cons 8.028834e-01   p_joint 2.162731e-03

Joint ci ratio: 5.105243e-02	ci left: 2.107643e-03	ci right 2.218422e-03	k: 5882	n:2720000
Cons ci ratio: 1.177761e-03	ci left: 8.023955e-01	ci right 8.033414e-01	k: 2183803	n:2720000
KS ci ratio: 1.167957e-01	ci left: 3.897888e-04	ci right 4.384910e-04	k: 1125	n:2720000
TRIL   2720000 perm   3321 sec   (819 perm/sec)   p_kst 4.136029e-04   p_cons 8.028688e-01   p_joint 2.162500e-03

Joint ci ratio: 5.095723e-02	ci left: 2.107878e-03	ci right 2.218457e-03	k: 5904	n:2730000
Cons ci ratio: 1.175611e-03	ci left: 8.023939e-01	ci right 8.033381e-01	k: 2191825	n:2730000
KS ci ratio: 1.165888e-01	ci left: 3.897834e-04	ci right 4.383928e-04	k: 1129	n:2730000
TRIL   2730000 perm   3343 sec   (817 perm/sec)   p_kst 4.135531e-04   p_cons 8.028663e-01   p_joint 2.162637e-03

Joint ci ratio: 5.087117e-02	ci left: 2.107392e-03	ci right 2.217752e-03	k: 5924	n:2740000
Cons ci ratio: 1.173438e-03	ci left: 8.024018e-01	ci right 8.033443e-01	k: 2199873	n:2740000
KS ci ratio: 1.164858e-01	ci left: 3.890695e-04	ci right 4.375440e-04	k: 1131	n:2740000
TRIL   2740000 perm   3366 sec   (814 perm/sec)   p_kst 4.127737e-04   p_cons 8.028734e-01   p_joint 2.162044e-03

Joint ci ratio: 5.079411e-02	ci left: 2.106191e-03	ci right 2.216317e-03	k: 5942	n:2750000
Cons ci ratio: 1.171257e-03	ci left: 8.024148e-01	ci right 8.033555e-01	k: 2207935	n:2750000
KS ci ratio: 1.163831e-01	ci left: 3.883608e-04	ci right 4.367014e-04	k: 1133	n:2750000
TRIL   2750000 perm   3389 sec   (811 perm/sec)   p_kst 4.120000e-04   p_cons 8.028855e-01   p_joint 2.160727e-03

Joint ci ratio: 5.070035e-02	ci left: 2.106429e-03	ci right 2.216359e-03	k: 5964	n:2760000
Cons ci ratio: 1.169084e-03	ci left: 8.024291e-01	ci right 8.033681e-01	k: 2216001	n:2760000
KS ci ratio: 1.160764e-01	ci left: 3.890644e-04	ci right 4.373562e-04	k: 1139	n:2760000
TRIL   2760000 perm   3412 sec   (809 perm/sec)   p_kst 4.126812e-04   p_cons 8.028989e-01   p_joint 2.160870e-03

Joint ci ratio: 5.062830e-02	ci left: 2.104884e-03	ci right 2.214572e-03	k: 5981	n:2770000
Cons ci ratio: 1.166966e-03	ci left: 8.024314e-01	ci right 8.033687e-01	k: 2224034	n:2770000
KS ci ratio: 1.160256e-01	ci left: 3.880103e-04	ci right 4.361488e-04	k: 1140	n:2770000
TRIL   2770000 perm   3435 sec   (806 perm/sec)   p_kst 4.115523e-04   p_cons 8.029004e-01   p_joint 2.159206e-03

Joint ci ratio: 5.055655e-02	ci left: 2.103350e-03	ci right 2.212799e-03	k: 5998	n:2780000
Cons ci ratio: 1.164840e-03	ci left: 8.024391e-01	ci right 8.033747e-01	k: 2232082	n:2780000
KS ci ratio: 1.157217e-01	ci left: 3.887103e-04	ci right 4.368007e-04	k: 1146	n:2780000
TRIL   2780000 perm   3458 sec   (804 perm/sec)   p_kst 4.122302e-04   p_cons 8.029072e-01   p_joint 2.157554e-03

Joint ci ratio: 5.044731e-02	ci left: 2.105013e-03	ci right 2.214304e-03	k: 6024	n:2790000
Cons ci ratio: 1.162767e-03	ci left: 8.024356e-01	ci right 8.033695e-01	k: 2240099	n:2790000
KS ci ratio: 1.155204e-01	ci left: 3.887094e-04	ci right 4.367102e-04	k: 1150	n:2790000
TRIL   2790000 perm   3481 sec   (802 perm/sec)   p_kst 4.121864e-04   p_cons 8.029029e-01   p_joint 2.159140e-03

Joint ci ratio: 5.038051e-02	ci left: 2.103137e-03	ci right 2.212182e-03	k: 6040	n:2800000
Cons ci ratio: 1.160728e-03	ci left: 8.024257e-01	ci right 8.033580e-01	k: 2248098	n:2800000
KS ci ratio: 1.152703e-01	ci left: 3.890553e-04	ci right 4.369878e-04	k: 1155	n:2800000
TRIL   2800000 perm   3504 sec   (799 perm/sec)   p_kst 4.125000e-04   p_cons 8.028921e-01   p_joint 2.157143e-03

Joint ci ratio: 5.026410e-02	ci left: 2.105492e-03	ci right 2.214399e-03	k: 6068	n:2810000
Cons ci ratio: 1.158611e-03	ci left: 8.024401e-01	ci right 8.033707e-01	k: 2256165	n:2810000
KS ci ratio: 1.148734e-01	ci left: 3.904358e-04	ci right 4.383615e-04	k: 1163	n:2810000
TRIL   2810000 perm   3527 sec   (797 perm/sec)   p_kst 4.138790e-04   p_cons 8.029057e-01   p_joint 2.159431e-03

Joint ci ratio: 5.016086e-02	ci left: 2.106780e-03	ci right 2.215523e-03	k: 6093	n:2820000
Cons ci ratio: 1.156562e-03	ci left: 8.024391e-01	ci right 8.033681e-01	k: 2264189	n:2820000
KS ci ratio: 1.146765e-01	ci left: 3.904290e-04	ci right 4.382662e-04	k: 1167	n:2820000
TRIL   2820000 perm   3551 sec   (794 perm/sec)   p_kst 4.138298e-04   p_cons 8.029039e-01   p_joint 2.160638e-03

Joint ci ratio: 5.001323e-02	ci left: 2.111897e-03	ci right 2.220575e-03	k: 6129	n:2830000
Cons ci ratio: 1.154477e-03	ci left: 8.024509e-01	ci right 8.033782e-01	k: 2272249	n:2830000
KS ci ratio: 1.145785e-01	ci left: 3.897358e-04	ci right 4.374445e-04	k: 1169	n:2830000
TRIL   2830000 perm   3574 sec   (792 perm/sec)   p_kst 4.130742e-04   p_cons 8.029148e-01   p_joint 2.165724e-03

Joint ci ratio: 4.991152e-02	ci left: 2.113153e-03	ci right 2.221668e-03	k: 6154	n:2840000
Cons ci ratio: 1.152432e-03	ci left: 8.024545e-01	ci right 8.033801e-01	k: 2280286	n:2840000
KS ci ratio: 1.143832e-01	ci left: 3.897316e-04	ci right 4.373530e-04	k: 1173	n:2840000
TRIL   2840000 perm   3598 sec   (789 perm/sec)   p_kst 4.130282e-04   p_cons 8.029176e-01   p_joint 2.166901e-03

Joint ci ratio: 4.982660e-02	ci left: 2.113015e-03	ci right 2.221333e-03	k: 6175	n:2850000
Cons ci ratio: 1.150455e-03	ci left: 8.024426e-01	ci right 8.033666e-01	k: 2288279	n:2850000
KS ci ratio: 1.141888e-01	ci left: 3.897275e-04	ci right 4.372621e-04	k: 1177	n:2850000
TRIL   2850000 perm   3622 sec   (787 perm/sec)   p_kst 4.129825e-04   p_cons 8.029049e-01   p_joint 2.166667e-03

Joint ci ratio: 4.972201e-02	ci left: 2.114605e-03	ci right 2.222771e-03	k: 6201	n:2860000
Cons ci ratio: 1.148451e-03	ci left: 8.024409e-01	ci right 8.033634e-01	k: 2296301	n:2860000
KS ci ratio: 1.138991e-01	ci left: 3.904029e-04	ci right 4.378909e-04	k: 1183	n:2860000
TRIL   2860000 perm   3645 sec   (785 perm/sec)   p_kst 4.136364e-04   p_cons 8.029024e-01   p_joint 2.168182e-03

Joint ci ratio: 4.965805e-02	ci left: 2.112743e-03	ci right 2.220670e-03	k: 6217	n:2870000
Cons ci ratio: 1.146467e-03	ci left: 8.024365e-01	ci right 8.033573e-01	k: 2304315	n:2870000
KS ci ratio: 1.136115e-01	ci left: 3.910738e-04	ci right 4.385152e-04	k: 1189	n:2870000
TRIL   2870000 perm   3669 sec   (782 perm/sec)   p_kst 4.142857e-04   p_cons 8.028972e-01   p_joint 2.166202e-03

Joint ci ratio: 4.954657e-02	ci left: 2.115008e-03	ci right 2.222802e-03	k: 6245	n:2880000
Cons ci ratio: 1.144494e-03	ci left: 8.024321e-01	ci right 8.033513e-01	k: 2312329	n:2880000
KS ci ratio: 1.132315e-01	ci left: 3.924148e-04	ci right 4.398491e-04	k: 1197	n:2880000
TRIL   2880000 perm   3693 sec   (780 perm/sec)   p_kst 4.156250e-04   p_cons 8.028920e-01   p_joint 2.168403e-03

Joint ci ratio: 4.945558e-02	ci left: 2.115550e-03	ci right 2.223168e-03	k: 6268	n:2890000
Cons ci ratio: 1.142504e-03	ci left: 8.024350e-01	ci right 8.033526e-01	k: 2320364	n:2890000
KS ci ratio: 1.130429e-01	ci left: 3.924019e-04	ci right 4.397503e-04	k: 1201	n:2890000
TRIL   2890000 perm   3716 sec   (778 perm/sec)   p_kst 4.155709e-04   p_cons 8.028941e-01   p_joint 2.168858e-03

Joint ci ratio: 4.938083e-02	ci left: 2.114726e-03	ci right 2.222134e-03	k: 6287	n:2900000
Cons ci ratio: 1.140579e-03	ci left: 8.024230e-01	ci right 8.033391e-01	k: 2328356	n:2900000
KS ci ratio: 1.126685e-01	ci left: 3.937296e-04	ci right 4.410704e-04	k: 1209	n:2900000
TRIL   2900000 perm   3740 sec   (775 perm/sec)   p_kst 4.168966e-04   p_cons 8.028814e-01   p_joint 2.167931e-03

Joint ci ratio: 4.293765e-02	ci left: 2.794683e-03	ci right 2.917650e-03	k: 8310	n:2910000
Cons ci ratio: 1.138671e-03	ci left: 8.024088e-01	ci right 8.033233e-01	k: 2336341	n:2910000
KS ci ratio: 1.122978e-01	ci left: 3.950484e-04	ci right 4.423811e-04	k: 1217	n:2910000
TRIL   2910000 perm   3764 sec   (773 perm/sec)   p_kst 4.182131e-04   p_cons 8.028663e-01   p_joint 2.855670e-03

Joint ci ratio: 4.286809e-02	ci left: 2.794259e-03	ci right 2.917004e-03	k: 8337	n:2920000
Cons ci ratio: 1.136672e-03	ci left: 8.024230e-01	ci right 8.033360e-01	k: 2344409	n:2920000
KS ci ratio: 1.121139e-01	ci left: 3.950269e-04	ci right 4.422744e-04	k: 1221	n:2920000
TRIL   2920000 perm   3788 sec   (771 perm/sec)   p_kst 4.181507e-04   p_cons 8.028798e-01   p_joint 2.855137e-03

Joint ci ratio: 4.281940e-02	ci left: 2.791138e-03	ci right 2.913602e-03	k: 8356	n:2930000
Cons ci ratio: 1.134748e-03	ci left: 8.024188e-01	ci right 8.033301e-01	k: 2352423	n:2930000
KS ci ratio: 1.118396e-01	ci left: 3.956691e-04	ci right 4.428700e-04	k: 1227	n:2930000
TRIL   2930000 perm   3813 sec   (769 perm/sec)   p_kst 4.187713e-04   p_cons 8.028747e-01   p_joint 2.851877e-03

Joint ci ratio: 4.276319e-02	ci left: 2.789047e-03	ci right 2.911255e-03	k: 8378	n:2940000
Cons ci ratio: 1.132801e-03	ci left: 8.024240e-01	ci right 8.033339e-01	k: 2360465	n:2940000
KS ci ratio: 1.117487e-01	ci left: 3.949845e-04	ci right 4.420630e-04	k: 1229	n:2940000
TRIL   2940000 perm   3837 sec   (766 perm/sec)   p_kst 4.180272e-04   p_cons 8.028793e-01   p_joint 2.849660e-03

Joint ci ratio: 4.267157e-02	ci left: 2.791666e-03	ci right 2.913720e-03	k: 8414	n:2950000
Cons ci ratio: 1.130873e-03	ci left: 8.024266e-01	ci right 8.033349e-01	k: 2368499	n:2950000
KS ci ratio: 1.113870e-01	ci left: 3.962818e-04	ci right 4.433520e-04	k: 1237	n:2950000
TRIL   2950000 perm   3863 sec   (764 perm/sec)   p_kst 4.193220e-04   p_cons 8.028810e-01   p_joint 2.852203e-03

Joint ci ratio: 4.890489e-02	ci left: 2.112903e-03	ci right 2.219156e-03	k: 6410	n:2960000
Cons ci ratio: 1.129009e-03	ci left: 8.024139e-01	ci right 8.033207e-01	k: 2376488	n:2960000
KS ci ratio: 1.113421e-01	ci left: 3.952714e-04	ci right 4.422014e-04	k: 1238	n:2960000
TRIL   2960000 perm   3888 sec   (761 perm/sec)   p_kst 4.182432e-04   p_cons 8.028676e-01   p_joint 2.165541e-03

Joint ci ratio: 4.878321e-02	ci left: 2.116432e-03	ci right 2.222590e-03	k: 6442	n:2970000
Cons ci ratio: 1.127099e-03	ci left: 8.024168e-01	ci right 8.033220e-01	k: 2384523	n:2970000
KS ci ratio: 1.110289e-01	ci left: 3.962319e-04	ci right 4.431349e-04	k: 1245	n:2970000
TRIL   2970000 perm   3912 sec   (759 perm/sec)   p_kst 4.191919e-04   p_cons 8.028697e-01   p_joint 2.169024e-03

Joint ci ratio: 4.245017e-02	ci left: 2.792778e-03	ci right 2.914232e-03	k: 8502	n:2980000
Cons ci ratio: 1.125149e-03	ci left: 8.024338e-01	ci right 8.033375e-01	k: 2392600	n:2980000
KS ci ratio: 1.108511e-01	ci left: 3.962073e-04	ci right 4.430274e-04	k: 1249	n:2980000
TRIL   2980000 perm   3937 sec   (757 perm/sec)   p_kst 4.191275e-04   p_cons 8.028859e-01   p_joint 2.853020e-03

Joint ci ratio: 4.236551e-02	ci left: 2.794688e-03	ci right 2.915977e-03	k: 8536	n:2990000
Cons ci ratio: 1.123305e-03	ci left: 8.024235e-01	ci right 8.033257e-01	k: 2400596	n:2990000
KS ci ratio: 1.107183e-01	ci left: 3.958578e-04	ci right 4.425768e-04	k: 1252	n:2990000
TRIL   2990000 perm   3962 sec   (755 perm/sec)   p_kst 4.187291e-04   p_cons 8.028749e-01   p_joint 2.854849e-03

Joint ci ratio: 4.230860e-02	ci left: 2.792958e-03	ci right 2.914005e-03	k: 8559	n:3000000
Cons ci ratio: 1.121388e-03	ci left: 8.024364e-01	ci right 8.033370e-01	k: 2408661	n:3000000
KS ci ratio: 1.104980e-01	ci left: 3.961588e-04	ci right 4.428143e-04	k: 1257	n:3000000
TRIL   3000000 perm   3987 sec   (752 perm/sec)   p_kst 4.190000e-04   p_cons 8.028870e-01   p_joint 2.853000e-03

Joint ci ratio: 4.222971e-02	ci left: 2.794198e-03	ci right 2.915067e-03	k: 8591	n:3010000
Cons ci ratio: 1.119554e-03	ci left: 8.024285e-01	ci right 8.033277e-01	k: 2416664	n:3010000
KS ci ratio: 1.103665e-01	ci left: 3.958118e-04	ci right 4.423674e-04	k: 1260	n:3010000
TRIL   3010000 perm   4012 sec   (750 perm/sec)   p_kst 4.186047e-04   p_cons 8.028784e-01   p_joint 2.854153e-03

Joint ci ratio: 4.214882e-02	ci left: 2.795758e-03	ci right 2.916457e-03	k: 8624	n:3020000
Cons ci ratio: 1.117679e-03	ci left: 8.024350e-01	ci right 8.033327e-01	k: 2424710	n:3020000
KS ci ratio: 1.102355e-01	ci left: 3.954671e-04	ci right 4.419234e-04	k: 1263	n:3020000
TRIL   3020000 perm   4037 sec   (748 perm/sec)   p_kst 4.182119e-04   p_cons 8.028841e-01   p_joint 2.855629e-03

Joint ci ratio: 4.205864e-02	ci left: 2.798613e-03	ci right 2.919171e-03	k: 8661	n:3030000
Cons ci ratio: 1.115861e-03	ci left: 8.024278e-01	ci right 8.033241e-01	k: 2432715	n:3030000
KS ci ratio: 1.100615e-01	ci left: 3.954457e-04	ci right 4.418214e-04	k: 1267	n:3030000
TRIL   3030000 perm   4061 sec   (746 perm/sec)   p_kst 4.181518e-04   p_cons 8.028762e-01   p_joint 2.858416e-03

Joint ci ratio: 4.197872e-02	ci left: 2.800149e-03	ci right 2.920538e-03	k: 8694	n:3040000
Cons ci ratio: 1.114010e-03	ci left: 8.024326e-01	ci right 8.033273e-01	k: 2440756	n:3040000
KS ci ratio: 1.099749e-01	ci left: 3.947847e-04	ci right 4.410440e-04	k: 1269	n:3040000
TRIL   3040000 perm   4087 sec   (744 perm/sec)   p_kst 4.174342e-04   p_cons 8.028803e-01   p_joint 2.859868e-03

Joint ci ratio: 4.191371e-02	ci left: 2.799728e-03	ci right 2.919908e-03	k: 8721	n:3050000
Cons ci ratio: 1.112231e-03	ci left: 8.024193e-01	ci right 8.033126e-01	k: 2448742	n:3050000
KS ci ratio: 1.097590e-01	ci left: 3.950846e-04	ci right 4.412823e-04	k: 1274	n:3050000
TRIL   3050000 perm   4112 sec   (742 perm/sec)   p_kst 4.177049e-04   p_cons 8.028662e-01   p_joint 2.859344e-03

Joint ci ratio: 4.185619e-02	ci left: 2.798339e-03	ci right 2.918291e-03	k: 8745	n:3060000
Cons ci ratio: 1.110355e-03	ci left: 8.024365e-01	ci right 8.033283e-01	k: 2456821	n:3060000
KS ci ratio: 1.095444e-01	ci left: 3.953827e-04	ci right 4.415190e-04	k: 1279	n:3060000
TRIL   3060000 perm   4137 sec   (740 perm/sec)   p_kst 4.179739e-04   p_cons 8.028827e-01   p_joint 2.857843e-03

Joint ci ratio: 4.177503e-02	ci left: 2.800183e-03	ci right 2.919976e-03	k: 8779	n:3070000
Cons ci ratio: 1.108485e-03	ci left: 8.024542e-01	ci right 8.033445e-01	k: 2464902	n:3070000
KS ci ratio: 1.092885e-01	ci left: 3.959957e-04	ci right 4.420887e-04	k: 1285	n:3070000
TRIL   3070000 perm   4163 sec   (738 perm/sec)   p_kst 4.185668e-04   p_cons 8.028997e-01   p_joint 2.859609e-03

Joint ci ratio: 4.169909e-02	ci left: 2.801373e-03	ci right 2.920993e-03	k: 8811	n:3080000
Cons ci ratio: 1.106713e-03	ci left: 8.024468e-01	ci right 8.033357e-01	k: 2472906	n:3080000
KS ci ratio: 1.090767e-01	ci left: 3.962890e-04	ci right 4.423210e-04	k: 1290	n:3080000
TRIL   3080000 perm   4188 sec   (735 perm/sec)   p_kst 4.188312e-04   p_cons 8.028916e-01   p_joint 2.860714e-03

Joint ci ratio: 4.161884e-02	ci left: 2.803196e-03	ci right 2.922658e-03	k: 8845	n:3090000
Cons ci ratio: 1.104897e-03	ci left: 8.024544e-01	ci right 8.033418e-01	k: 2480956	n:3090000
KS ci ratio: 1.086983e-01	ci left: 3.978399e-04	ci right 4.438815e-04	k: 1299	n:3090000
TRIL   3090000 perm   4214 sec   (733 perm/sec)   p_kst 4.203883e-04   p_cons 8.028984e-01   p_joint 2.862460e-03

Joint ci ratio: 4.157428e-02	ci left: 2.800218e-03	ci right 2.919423e-03	k: 8864	n:3100000
Cons ci ratio: 1.103142e-03	ci left: 8.024467e-01	ci right 8.033327e-01	k: 2488959	n:3100000
KS ci ratio: 1.085732e-01	ci left: 3.974980e-04	ci right 4.434436e-04	k: 1302	n:3100000
TRIL   3100000 perm   4240 sec   (731 perm/sec)   p_kst 4.200000e-04   p_cons 8.028900e-01   p_joint 2.859355e-03

Joint ci ratio: 4.147606e-02	ci left: 2.804579e-03	ci right 2.923681e-03	k: 8906	n:3110000
Cons ci ratio: 1.101310e-03	ci left: 8.024639e-01	ci right 8.033484e-01	k: 2497039	n:3110000
KS ci ratio: 1.082000e-01	ci left: 3.990353e-04	ci right 4.449900e-04	k: 1311	n:3110000
TRIL   3110000 perm   4266 sec   (729 perm/sec)   p_kst 4.215434e-04   p_cons 8.029064e-01   p_joint 2.863666e-03

Joint ci ratio: 4.748864e-02	ci left: 2.127410e-03	ci right 2.231209e-03	k: 6798	n:3120000
Cons ci ratio: 1.099619e-03	ci left: 8.024431e-01	ci right 8.033262e-01	k: 2505001	n:3120000
KS ci ratio: 1.079125e-01	ci left: 3.999393e-04	ci right 4.458680e-04	k: 1318	n:3120000
TRIL   3120000 perm   4291 sec   (727 perm/sec)   p_kst 4.224359e-04   p_cons 8.028849e-01   p_joint 2.178846e-03

Joint ci ratio: 4.741548e-02	ci left: 2.127243e-03	ci right 2.230870e-03	k: 6819	n:3130000
Cons ci ratio: 1.097846e-03	ci left: 8.024480e-01	ci right 8.033297e-01	k: 2513043	n:3130000
KS ci ratio: 1.077900e-01	ci left: 3.995941e-04	ci right 4.454278e-04	k: 1321	n:3130000
TRIL   3130000 perm   4317 sec   (725 perm/sec)   p_kst 4.220447e-04   p_cons 8.028891e-01   p_joint 2.178594e-03

Joint ci ratio: 4.124967e-02	ci left: 2.808671e-03	ci right 2.927280e-03	k: 9004	n:3140000
Cons ci ratio: 1.096123e-03	ci left: 8.024411e-01	ci right 8.033214e-01	k: 2521048	n:3140000
KS ci ratio: 1.076273e-01	ci left: 3.995611e-04	ci right 4.453174e-04	k: 1325	n:3140000
TRIL   3140000 perm   4342 sec   (723 perm/sec)   p_kst 4.219745e-04   p_cons 8.028815e-01   p_joint 2.867516e-03

Joint ci ratio: 4.119942e-02	ci left: 2.806667e-03	ci right 2.925044e-03	k: 9026	n:3150000
Cons ci ratio: 1.094365e-03	ci left: 8.024466e-01	ci right 8.033255e-01	k: 2529092	n:3150000
KS ci ratio: 1.073846e-01	ci left: 4.001462e-04	ci right 4.458597e-04	k: 1331	n:3150000
TRIL   3150000 perm   4367 sec   (721 perm/sec)   p_kst 4.225397e-04   p_cons 8.028863e-01   p_joint 2.865397e-03

Joint ci ratio: 4.115619e-02	ci left: 2.803736e-03	ci right 2.921862e-03	k: 9045	n:3160000
Cons ci ratio: 1.092622e-03	ci left: 8.024502e-01	ci right 8.033277e-01	k: 2537130	n:3160000
KS ci ratio: 1.073444e-01	ci left: 3.991879e-04	ci right 4.447737e-04	k: 1332	n:3160000
TRIL   3160000 perm   4392 sec   (719 perm/sec)   p_kst 4.215190e-04   p_cons 8.028892e-01   p_joint 2.862342e-03

Joint ci ratio: 4.107223e-02	ci left: 2.806443e-03	ci right 2.924436e-03	k: 9082	n:3170000
Cons ci ratio: 1.090944e-03	ci left: 8.024373e-01	ci right 8.033135e-01	k: 2545116	n:3170000
KS ci ratio: 1.072238e-01	ci left: 3.988496e-04	ci right 4.443424e-04	k: 1335	n:3170000
TRIL   3170000 perm   4418 sec   (717 perm/sec)   p_kst 4.211356e-04   p_cons 8.028757e-01   p_joint 2.864984e-03

Joint ci ratio: 4.101810e-02	ci left: 2.805088e-03	ci right 2.922865e-03	k: 9106	n:3180000
Cons ci ratio: 1.089164e-03	ci left: 8.024564e-01	ci right 8.033311e-01	k: 2553203	n:3180000
KS ci ratio: 1.070637e-01	ci left: 3.988195e-04	ci right 4.442366e-04	k: 1339	n:3180000
TRIL   3180000 perm   4445 sec   (715 perm/sec)   p_kst 4.210692e-04   p_cons 8.028940e-01   p_joint 2.863522e-03

Joint ci ratio: 4.095070e-02	ci left: 2.805602e-03	ci right 2.923203e-03	k: 9136	n:3190000
Cons ci ratio: 1.087427e-03	ci left: 8.024655e-01	ci right 8.033389e-01	k: 2561259	n:3190000
KS ci ratio: 1.069440e-01	ci left: 3.984846e-04	ci right 4.438096e-04	k: 1342	n:3190000
TRIL   3190000 perm   4471 sec   (714 perm/sec)   p_kst 4.206897e-04   p_cons 8.029025e-01   p_joint 2.863950e-03

Joint ci ratio: 4.087916e-02	ci left: 2.806732e-03	ci right 2.924170e-03	k: 9168	n:3200000
Cons ci ratio: 1.085737e-03	ci left: 8.024631e-01	ci right 8.033351e-01	k: 2569278	n:3200000
KS ci ratio: 1.066269e-01	ci left: 3.996725e-04	ci right 4.449895e-04	k: 1350	n:3200000
TRIL   3200000 perm   4496 sec   (712 perm/sec)   p_kst 4.218750e-04   p_cons 8.028994e-01   p_joint 2.865000e-03

Joint ci ratio: 4.080799e-02	ci left: 2.807856e-03	ci right 2.925131e-03	k: 9200	n:3210000
Cons ci ratio: 1.083997e-03	ci left: 8.024775e-01	ci right 8.033481e-01	k: 2577351	n:3210000
KS ci ratio: 1.065087e-01	ci left: 3.993371e-04	ci right 4.445627e-04	k: 1353	n:3210000
TRIL   3210000 perm   4522 sec   (710 perm/sec)   p_kst 4.214953e-04   p_cons 8.029131e-01   p_joint 2.866044e-03

Joint ci ratio: 4.073055e-02	ci left: 2.809895e-03	ci right 2.927027e-03	k: 9235	n:3220000
Cons ci ratio: 1.082314e-03	ci left: 8.024778e-01	ci right 8.033471e-01	k: 2585379	n:3220000
KS ci ratio: 1.062735e-01	ci left: 3.999107e-04	ci right 4.450950e-04	k: 1359	n:3220000
TRIL   3220000 perm   4548 sec   (708 perm/sec)   p_kst 4.220497e-04   p_cons 8.029127e-01   p_joint 2.868012e-03

Joint ci ratio: 4.066676e-02	ci left: 2.810082e-03	ci right 2.927035e-03	k: 9264	n:3230000
Cons ci ratio: 1.080644e-03	ci left: 8.024766e-01	ci right 8.033445e-01	k: 2593402	n:3230000
KS ci ratio: 1.061175e-01	ci left: 3.998781e-04	ci right 4.449882e-04	k: 1363	n:3230000
TRIL   3230000 perm   4575 sec   (706 perm/sec)   p_kst 4.219814e-04   p_cons 8.029108e-01   p_joint 2.868111e-03

Joint ci ratio: 4.060326e-02	ci left: 2.810269e-03	ci right 2.927042e-03	k: 9293	n:3240000
Cons ci ratio: 1.078987e-03	ci left: 8.024738e-01	ci right 8.033404e-01	k: 2601420	n:3240000
KS ci ratio: 1.061176e-01	ci left: 3.986439e-04	ci right 4.436148e-04	k: 1363	n:3240000
TRIL   3240000 perm   4602 sec   (704 perm/sec)   p_kst 4.206790e-04   p_cons 8.029074e-01   p_joint 2.868210e-03

Joint ci ratio: 4.051392e-02	ci left: 2.814109e-03	ci right 2.930779e-03	k: 9334	n:3250000
Cons ci ratio: 1.077260e-03	ci left: 8.024936e-01	ci right 8.033588e-01	k: 2609511	n:3250000
KS ci ratio: 1.058077e-01	ci left: 3.998136e-04	ci right 4.447766e-04	k: 1371	n:3250000
TRIL   3250000 perm   4629 sec   (702 perm/sec)   p_kst 4.218462e-04   p_cons 8.029265e-01   p_joint 2.872000e-03

Joint ci ratio: 4.043814e-02	ci left: 2.816105e-03	ci right 2.932634e-03	k: 9369	n:3260000
Cons ci ratio: 1.075672e-03	ci left: 8.024751e-01	ci right 8.033391e-01	k: 2617478	n:3260000
KS ci ratio: 1.056538e-01	ci left: 3.997817e-04	ci right 4.446717e-04	k: 1375	n:3260000
TRIL   3260000 perm   4656 sec   (700 perm/sec)   p_kst 4.217791e-04   p_cons 8.029074e-01   p_joint 2.873926e-03

Joint ci ratio: 4.035418e-02	ci left: 2.819299e-03	ci right 2.935712e-03	k: 9408	n:3270000
Cons ci ratio: 1.074006e-03	ci left: 8.024816e-01	ci right 8.033442e-01	k: 2625526	n:3270000
KS ci ratio: 1.052719e-01	ci left: 4.015366e-04	ci right 4.464506e-04	k: 1385	n:3270000
TRIL   3270000 perm   4683 sec   (698 perm/sec)   p_kst 4.235474e-04   p_cons 8.029131e-01   p_joint 2.877064e-03

Joint ci ratio: 4.030499e-02	ci left: 2.817645e-03	ci right 2.933845e-03	k: 9431	n:3280000
Cons ci ratio: 1.072336e-03	ci left: 8.024916e-01	ci right 8.033529e-01	k: 2633586	n:3280000
KS ci ratio: 1.051203e-01	ci left: 4.014999e-04	ci right 4.463410e-04	k: 1389	n:3280000
TRIL   3280000 perm   4709 sec   (696 perm/sec)   p_kst 4.234756e-04   p_cons 8.029226e-01   p_joint 2.875305e-03

Joint ci ratio: 4.022824e-02	ci left: 2.819913e-03	ci right 2.935980e-03	k: 9467	n:3290000
Cons ci ratio: 1.070756e-03	ci left: 8.024773e-01	ci right 8.033373e-01	k: 2641566	n:3290000
KS ci ratio: 1.050448e-01	ci left: 4.008714e-04	ci right 4.456082e-04	k: 1391	n:3290000
TRIL   3290000 perm   4736 sec   (695 perm/sec)   p_kst 4.227964e-04   p_cons 8.029076e-01   p_joint 2.877508e-03

Joint ci ratio: 4.016890e-02	ci left: 2.819767e-03	ci right 2.935653e-03	k: 9495	n:3300000
Cons ci ratio: 1.069103e-03	ci left: 8.024865e-01	ci right 8.033451e-01	k: 2649623	n:3300000
KS ci ratio: 1.048191e-01	ci left: 4.014271e-04	ci right 4.461238e-04	k: 1397	n:3300000
TRIL   3300000 perm   4763 sec   (693 perm/sec)   p_kst 4.233333e-04   p_cons 8.029161e-01   p_joint 2.877273e-03

Joint ci ratio: 4.011192e-02	ci left: 2.819324e-03	ci right 2.935023e-03	k: 9522	n:3310000
Cons ci ratio: 1.067486e-03	ci left: 8.024874e-01	ci right 8.033447e-01	k: 2657653	n:3310000
KS ci ratio: 1.046695e-01	ci left: 4.013912e-04	ci right 4.460161e-04	k: 1401	n:3310000
TRIL   3310000 perm   4791 sec   (691 perm/sec)   p_kst 4.232628e-04   p_cons 8.029163e-01   p_joint 2.876737e-03

Joint ci ratio: 4.007203e-02	ci left: 2.816497e-03	ci right 2.931963e-03	k: 9541	n:3320000
Cons ci ratio: 1.065861e-03	ci left: 8.024928e-01	ci right 8.033489e-01	k: 2665698	n:3320000
KS ci ratio: 1.045577e-01	ci left: 4.010621e-04	ci right 4.455999e-04	k: 1404	n:3320000
TRIL   3320000 perm   4818 sec   (689 perm/sec)   p_kst 4.228916e-04   p_cons 8.029211e-01   p_joint 2.873795e-03

Joint ci ratio: 4.000289e-02	ci left: 2.817850e-03	ci right 2.933167e-03	k: 9574	n:3330000
Cons ci ratio: 1.064282e-03	ci left: 8.024867e-01	ci right 8.033416e-01	k: 2673705	n:3330000
KS ci ratio: 1.044092e-01	ci left: 4.010275e-04	ci right 4.454943e-04	k: 1408	n:3330000
TRIL   3330000 perm   4845 sec   (687 perm/sec)   p_kst 4.228228e-04   p_cons 8.029144e-01   p_joint 2.875075e-03

Joint ci ratio: 3.995496e-02	ci left: 2.816231e-03	ci right 2.931341e-03	k: 9597	n:3340000
Cons ci ratio: 1.062633e-03	ci left: 8.025038e-01	ci right 8.033573e-01	k: 2681789	n:3340000
KS ci ratio: 1.042613e-01	ci left: 4.009932e-04	ci right 4.453894e-04	k: 1412	n:3340000
TRIL   3340000 perm   4872 sec   (685 perm/sec)   p_kst 4.227545e-04   p_cons 8.029308e-01   p_joint 2.873353e-03

Joint ci ratio: 3.988020e-02	ci left: 2.818463e-03	ci right 2.933444e-03	k: 9633	n:3350000
Cons ci ratio: 1.061048e-03	ci left: 8.025038e-01	ci right 8.033560e-01	k: 2689816	n:3350000
KS ci ratio: 1.040039e-01	ci left: 4.018313e-04	ci right 4.462038e-04	k: 1419	n:3350000
TRIL   3350000 perm   4900 sec   (684 perm/sec)   p_kst 4.235821e-04   p_cons 8.029301e-01   p_joint 2.875522e-03

Joint ci ratio: 3.982031e-02	ci left: 2.818620e-03	ci right 2.933430e-03	k: 9662	n:3360000
Cons ci ratio: 1.059490e-03	ci left: 8.024978e-01	ci right 8.033487e-01	k: 2697823	n:3360000
KS ci ratio: 1.038578e-01	ci left: 4.017950e-04	ci right 4.460972e-04	k: 1423	n:3360000
TRIL   3360000 perm   4928 sec   (682 perm/sec)   p_kst 4.235119e-04   p_cons 8.029235e-01   p_joint 2.875595e-03

Joint ci ratio: 3.976892e-02	ci left: 2.817600e-03	ci right 2.932218e-03	k: 9687	n:3370000
Cons ci ratio: 1.057909e-03	ci left: 8.025007e-01	ci right 8.033504e-01	k: 2705860	n:3370000
KS ci ratio: 1.037122e-01	ci left: 4.017588e-04	ci right 4.459912e-04	k: 1427	n:3370000
TRIL   3370000 perm   4955 sec   (680 perm/sec)   p_kst 4.234421e-04   p_cons 8.029258e-01   p_joint 2.874481e-03

Joint ci ratio: 3.971773e-02	ci left: 2.816587e-03	ci right 2.931013e-03	k: 9712	n:3380000
Cons ci ratio: 1.056298e-03	ci left: 8.025149e-01	ci right 8.033633e-01	k: 2713935	n:3380000
KS ci ratio: 1.036397e-01	ci left: 4.011465e-04	ci right 4.452788e-04	k: 1429	n:3380000
TRIL   3380000 perm   4983 sec   (678 perm/sec)   p_kst 4.227811e-04   p_cons 8.029393e-01   p_joint 2.873373e-03

Joint ci ratio: 3.965653e-02	ci left: 2.817040e-03	ci right 2.931304e-03	k: 9742	n:3390000
Cons ci ratio: 1.054743e-03	ci left: 8.025142e-01	ci right 8.033614e-01	k: 2721960	n:3390000
KS ci ratio: 1.034950e-01	ci left: 4.011126e-04	ci right 4.451758e-04	k: 1433	n:3390000
TRIL   3390000 perm   5010 sec   (677 perm/sec)   p_kst 4.227139e-04   p_cons 8.029381e-01   p_joint 2.873746e-03

Joint ci ratio: 3.958951e-02	ci left: 2.818365e-03	ci right 2.932484e-03	k: 9775	n:3400000
Cons ci ratio: 1.053162e-03	ci left: 8.025236e-01	ci right 8.033695e-01	k: 2730019	n:3400000
KS ci ratio: 1.033151e-01	ci left: 4.013654e-04	ci right 4.453750e-04	k: 1438	n:3400000
TRIL   3400000 perm   5036 sec   (675 perm/sec)   p_kst 4.229412e-04   p_cons 8.029468e-01   p_joint 2.875000e-03

Joint ci ratio: 3.953699e-02	ci left: 2.817649e-03	ci right 2.931585e-03	k: 9801	n:3410000
Cons ci ratio: 1.051657e-03	ci left: 8.025120e-01	ci right 8.033567e-01	k: 2738007	n:3410000
KS ci ratio: 1.031360e-01	ci left: 4.016168e-04	ci right 4.455731e-04	k: 1443	n:3410000
TRIL   3410000 perm   5064 sec   (673 perm/sec)   p_kst 4.231672e-04   p_cons 8.029346e-01   p_joint 2.874194e-03

Joint ci ratio: 3.949475e-02	ci left: 2.815490e-03	ci right 2.929214e-03	k: 9822	n:3420000
Cons ci ratio: 1.050124e-03	ci left: 8.025108e-01	ci right 8.033542e-01	k: 2746030	n:3420000
KS ci ratio: 1.029935e-01	ci left: 4.015819e-04	ci right 4.454700e-04	k: 1447	n:3420000
TRIL   3420000 perm   5094 sec   (671 perm/sec)   p_kst 4.230994e-04   p_cons 8.029327e-01   p_joint 2.871930e-03

Joint ci ratio: 3.942654e-02	ci left: 2.817096e-03	ci right 2.930684e-03	k: 9856	n:3430000
Cons ci ratio: 1.048622e-03	ci left: 8.025025e-01	ci right 8.033448e-01	k: 2754029	n:3430000
KS ci ratio: 1.027454e-01	ci left: 4.023995e-04	ci right 4.462645e-04	k: 1454	n:3430000
TRIL   3430000 perm   5123 sec   (670 perm/sec)   p_kst 4.239067e-04   p_cons 8.029239e-01   p_joint 2.873469e-03

Joint ci ratio: 3.937067e-02	ci left: 2.816966e-03	ci right 2.930385e-03	k: 9884	n:3440000
Cons ci ratio: 1.047127e-03	ci left: 8.024938e-01	ci right 8.033348e-01	k: 2762026	n:3440000
KS ci ratio: 1.026397e-01	ci left: 4.020794e-04	ci right 4.458617e-04	k: 1457	n:3440000
TRIL   3440000 perm   5152 sec   (668 perm/sec)   p_kst 4.235465e-04   p_cons 8.029145e-01   p_joint 2.873256e-03

Joint ci ratio: 3.930708e-02	ci left: 2.817985e-03	ci right 2.931257e-03	k: 9916	n:3450000
Cons ci ratio: 1.045574e-03	ci left: 8.025048e-01	ci right 8.033446e-01	k: 2770091	n:3450000
KS ci ratio: 1.024992e-01	ci left: 4.020436e-04	ci right 4.457585e-04	k: 1461	n:3450000
TRIL   3450000 perm   5181 sec   (666 perm/sec)   p_kst 4.234783e-04   p_cons 8.029249e-01   p_joint 2.874203e-03

Joint ci ratio: 3.924379e-02	ci left: 2.818999e-03	ci right 2.932125e-03	k: 9948	n:3460000
Cons ci ratio: 1.043991e-03	ci left: 8.025270e-01	ci right 8.033655e-01	k: 2778195	n:3460000
KS ci ratio: 1.022546e-01	ci left: 4.028530e-04	ci right 4.465451e-04	k: 1468	n:3460000
TRIL   3460000 perm   5210 sec   (664 perm/sec)   p_kst 4.242775e-04   p_cons 8.029465e-01   p_joint 2.875145e-03

Joint ci ratio: 3.917295e-02	ci left: 2.821148e-03	ci right 2.934151e-03	k: 9984	n:3470000
Cons ci ratio: 1.042518e-03	ci left: 8.025177e-01	ci right 8.033550e-01	k: 2786190	n:3470000
KS ci ratio: 1.021157e-01	ci left: 4.028153e-04	ci right 4.464404e-04	k: 1472	n:3470000
TRIL   3470000 perm   5238 sec   (662 perm/sec)   p_kst 4.242075e-04   p_cons 8.029366e-01   p_joint 2.877233e-03

Joint ci ratio: 3.913578e-02	ci left: 2.818447e-03	ci right 2.931233e-03	k: 10003	n:3480000
Cons ci ratio: 1.041045e-03	ci left: 8.025104e-01	ci right 8.033466e-01	k: 2794192	n:3480000
KS ci ratio: 1.020119e-01	ci left: 4.024978e-04	ci right 4.460416e-04	k: 1475	n:3480000
TRIL   3480000 perm   5267 sec   (661 perm/sec)   p_kst 4.238506e-04   p_cons 8.029287e-01   p_joint 2.874425e-03

Joint ci ratio: 4.479556e-02	ci left: 2.140348e-03	ci right 2.238704e-03	k: 7640	n:3490000
Cons ci ratio: 1.039506e-03	ci left: 8.025253e-01	ci right 8.033602e-01	k: 2802271	n:3490000
KS ci ratio: 1.019429e-01	ci left: 4.019030e-04	ci right 4.453512e-04	k: 1477	n:3490000
TRIL   3490000 perm   5295 sec   (659 perm/sec)   p_kst 4.232092e-04   p_cons 8.029430e-01   p_joint 2.189112e-03

Joint ci ratio: 4.473413e-02	ci left: 2.140166e-03	ci right 2.238375e-03	k: 7661	n:3500000
Cons ci ratio: 1.038028e-03	ci left: 8.025234e-01	ci right 8.033572e-01	k: 2810292	n:3500000
KS ci ratio: 1.017708e-01	ci left: 4.021469e-04	ci right 4.455437e-04	k: 1482	n:3500000
TRIL   3500000 perm   5324 sec   (657 perm/sec)   p_kst 4.234286e-04   p_cons 8.029406e-01   p_joint 2.188857e-03

Joint ci ratio: 4.467588e-02	ci left: 2.139703e-03	ci right 2.237759e-03	k: 7681	n:3510000
Cons ci ratio: 1.036557e-03	ci left: 8.025214e-01	ci right 8.033539e-01	k: 2818312	n:3510000
KS ci ratio: 1.017366e-01	ci left: 4.012788e-04	ci right 4.445665e-04	k: 1483	n:3510000
TRIL   3510000 perm   5352 sec   (656 perm/sec)   p_kst 4.225071e-04   p_cons 8.029379e-01   p_joint 2.188319e-03

Joint ci ratio: 4.459754e-02	ci left: 2.141209e-03	ci right 2.239158e-03	k: 7708	n:3520000
Cons ci ratio: 1.035118e-03	ci left: 8.025113e-01	ci right 8.033427e-01	k: 2826304	n:3520000
KS ci ratio: 1.015315e-01	ci left: 4.018000e-04	ci right 4.450514e-04	k: 1489	n:3520000
TRIL   3520000 perm   5380 sec   (654 perm/sec)   p_kst 4.230114e-04   p_cons 8.029273e-01   p_joint 2.189773e-03

Joint ci ratio: 4.455426e-02	ci left: 2.139345e-03	ci right 2.237112e-03	k: 7723	n:3530000
Cons ci ratio: 1.033614e-03	ci left: 8.025232e-01	ci right 8.033534e-01	k: 2834373	n:3530000
KS ci ratio: 1.013277e-01	ci left: 4.023184e-04	ci right 4.455335e-04	k: 1495	n:3530000
TRIL   3530000 perm   5409 sec   (653 perm/sec)   p_kst 4.235127e-04   p_cons 8.029385e-01   p_joint 2.187819e-03

Joint ci ratio: 4.447656e-02	ci left: 2.140844e-03	ci right 2.238504e-03	k: 7750	n:3540000
Cons ci ratio: 1.032151e-03	ci left: 8.025245e-01	ci right 8.033535e-01	k: 2842405	n:3540000
KS ci ratio: 1.011251e-01	ci left: 4.028339e-04	ci right 4.460127e-04	k: 1501	n:3540000
TRIL   3540000 perm   5438 sec   (651 perm/sec)   p_kst 4.240113e-04   p_cons 8.029393e-01   p_joint 2.189266e-03

Joint ci ratio: 4.441643e-02	ci left: 2.140663e-03	ci right 2.238180e-03	k: 7771	n:3550000
Cons ci ratio: 1.030719e-03	ci left: 8.025179e-01	ci right 8.033458e-01	k: 2850409	n:3550000
KS ci ratio: 1.009907e-01	ci left: 4.027975e-04	ci right 4.459116e-04	k: 1505	n:3550000
TRIL   3550000 perm   5467 sec   (649 perm/sec)   p_kst 4.239437e-04   p_cons 8.029321e-01   p_joint 2.189014e-03

Joint ci ratio: 4.435370e-02	ci left: 2.140761e-03	ci right 2.238141e-03	k: 7793	n:3560000
Cons ci ratio: 1.029287e-03	ci left: 8.025136e-01	ci right 8.033404e-01	k: 2858421	n:3560000
KS ci ratio: 1.008235e-01	ci left: 4.030351e-04	ci right 4.460989e-04	k: 1510	n:3560000
TRIL   3560000 perm   5496 sec   (648 perm/sec)   p_kst 4.241573e-04   p_cons 8.029272e-01   p_joint 2.189045e-03

Joint ci ratio: 4.428840e-02	ci left: 2.141136e-03	ci right 2.238386e-03	k: 7816	n:3570000
Cons ci ratio: 1.027823e-03	ci left: 8.025206e-01	ci right 8.033461e-01	k: 2866473	n:3570000
KS ci ratio: 1.007568e-01	ci left: 4.024522e-04	ci right 4.454237e-04	k: 1512	n:3570000
TRIL   3570000 perm   5524 sec   (646 perm/sec)   p_kst 4.235294e-04   p_cons 8.029336e-01   p_joint 2.189356e-03

Joint ci ratio: 4.423186e-02	ci left: 2.140680e-03	ci right 2.237782e-03	k: 7836	n:3580000
Cons ci ratio: 1.026336e-03	ci left: 8.025367e-01	ci right 8.033611e-01	k: 2874558	n:3580000
KS ci ratio: 1.006571e-01	ci left: 4.021449e-04	ci right 4.450386e-04	k: 1515	n:3580000
TRIL   3580000 perm   5554 sec   (645 perm/sec)   p_kst 4.231844e-04   p_cons 8.029492e-01   p_joint 2.188827e-03

Joint ci ratio: 4.416991e-02	ci left: 2.140778e-03	ci right 2.237744e-03	k: 7858	n:3590000
Cons ci ratio: 1.024934e-03	ci left: 8.025285e-01	ci right 8.033518e-01	k: 2882556	n:3590000
KS ci ratio: 1.005246e-01	ci left: 4.021109e-04	ci right 4.449411e-04	k: 1519	n:3590000
TRIL   3590000 perm   5582 sec   (643 perm/sec)   p_kst 4.231198e-04   p_cons 8.029404e-01   p_joint 2.188858e-03

Joint ci ratio: 4.411943e-02	ci left: 2.139776e-03	ci right 2.236583e-03	k: 7876	n:3600000
Cons ci ratio: 1.023474e-03	ci left: 8.025401e-01	ci right 8.033622e-01	k: 2890625	n:3600000
KS ci ratio: 1.004255e-01	ci left: 4.018063e-04	ci right 4.445595e-04	k: 1522	n:3600000
TRIL   3600000 perm   5611 sec   (642 perm/sec)   p_kst 4.227778e-04   p_cons 8.029514e-01   p_joint 2.187778e-03

Joint ci ratio: 4.404398e-02	ci left: 2.141245e-03	ci right 2.237949e-03	k: 7903	n:3610000
Cons ci ratio: 1.022054e-03	ci left: 8.025411e-01	ci right 8.033620e-01	k: 2898656	n:3610000
KS ci ratio: 1.003268e-01	ci left: 4.015034e-04	ci right 4.441799e-04	k: 1525	n:3610000
TRIL   3610000 perm   5639 sec   (640 perm/sec)   p_kst 4.224377e-04   p_cons 8.029518e-01   p_joint 2.189197e-03

Joint ci ratio: 4.397725e-02	ci left: 2.141887e-03	ci right 2.238470e-03	k: 7927	n:3620000
Cons ci ratio: 1.020643e-03	ci left: 8.025412e-01	ci right 8.033610e-01	k: 2906684	n:3620000
KS ci ratio: 1.002611e-01	ci left: 4.009329e-04	ci right 4.435192e-04	k: 1527	n:3620000
TRIL   3620000 perm   5668 sec   (639 perm/sec)   p_kst 4.218232e-04   p_cons 8.029514e-01   p_joint 2.189779e-03

Joint ci ratio: 4.392744e-02	ci left: 2.140891e-03	ci right 2.237317e-03	k: 7945	n:3630000
Cons ci ratio: 1.019245e-03	ci left: 8.025392e-01	ci right 8.033578e-01	k: 2914704	n:3630000
KS ci ratio: 1.000648e-01	ci left: 4.014399e-04	ci right 4.439917e-04	k: 1533	n:3630000
TRIL   3630000 perm   5698 sec   (637 perm/sec)   p_kst 4.223140e-04   p_cons 8.029488e-01   p_joint 2.188705e-03

Joint ci ratio: 4.386399e-02	ci left: 2.141258e-03	ci right 2.237558e-03	k: 7968	n:3640000
Cons ci ratio: 1.017786e-03	ci left: 8.025578e-01	ci right 8.033753e-01	k: 2922799	n:3640000
KS ci ratio: 9.980489e-02	ci left: 4.024800e-04	ci right 4.450246e-04	k: 1541	n:3640000
TRIL   3640000 perm   5727 sec   (636 perm/sec)   p_kst 4.233516e-04   p_cons 8.029668e-01   p_joint 2.189011e-03

Outputting figure to mutsig2_images.part000000000181/TRIL.2_2440_3640000_0.00042335_0.80297_0.002189.png
                gene_name: TRIL
               theta_stop: 0.100 
                    nperm: 3640000 
                     p_ks: 0.00042 
        ci_ks_bounds_left: 0.00040 
       ci_ks_bounds_right: 0.00045 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.0022 
     ci_joint_bounds_left: 0.0021 
    ci_joint_bounds_right: 0.0022 

Current progress: 90 percent done.
TRIM26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.148235e-02	ci left: 3.574437e-01	ci right 3.764339e-01	k: 3669	n:10000
KS ci ratio: 1.851014e-02	ci left: 8.099906e-01	ci right 8.252239e-01	k: 8177	n:10000
TRIM26   10000 perm   2 sec   (6222 perm/sec)   p_kst 8.177000e-01   p_cons 3.669000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIM26.2_1648_10000_0.8177_0.3669_1.png
                gene_name: TRIM26
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
TRIM28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.182535e-01	ci left: 9.311639e-02	ci right 1.049184e-01	k: 989	n:10000
KS ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
TRIM28   10000 perm   2 sec   (5251 perm/sec)   p_kst 4.000000e-04   p_cons 9.890000e-02   p_joint 0

Joint ci ratio: 3.919804e+00	ci left: 0	ci right 1.844270e-04	k: 0	n:20000
Cons ci ratio: 8.440230e-02	ci left: 9.322640e-02	ci right 1.014911e-01	k: 1946	n:20000
KS ci ratio: 1.181570e+00	ci left: 2.397946e-04	ci right 9.193249e-04	k: 10	n:20000
TRIM28   20000 perm   4 sec   (4943 perm/sec)   p_kst 5.000000e-04   p_cons 9.730000e-02   p_joint 0

Joint ci ratio: 3.919869e+00	ci left: 0	ci right 1.229551e-04	k: 0	n:30000
Cons ci ratio: 6.876475e-02	ci left: 9.436263e-02	ci right 1.011155e-01	k: 2931	n:30000
KS ci ratio: 1.011870e+00	ci left: 2.551537e-04	ci right 7.828635e-04	k: 14	n:30000
TRIM28   30000 perm   6 sec   (4787 perm/sec)   p_kst 4.666667e-04   p_cons 9.770000e-02   p_joint 0

Joint ci ratio: 3.919902e+00	ci left: 0	ci right 9.221773e-05	k: 0	n:40000
Cons ci ratio: 5.969051e-02	ci left: 9.441247e-02	ci right 1.002461e-01	k: 3892	n:40000
KS ci ratio: 8.763085e-01	ci left: 2.860045e-04	ci right 7.416724e-04	k: 19	n:40000
TRIM28   40000 perm   9 sec   (4686 perm/sec)   p_kst 4.750000e-04   p_cons 9.730000e-02   p_joint 0

Joint ci ratio: 3.919922e+00	ci left: 0	ci right 7.377487e-05	k: 0	n:50000
Cons ci ratio: 5.334188e-02	ci left: 9.487380e-02	ci right 1.000930e-01	k: 4873	n:50000
KS ci ratio: 8.171803e-01	ci left: 2.757655e-04	ci right 6.660900e-04	k: 22	n:50000
TRIM28   50000 perm   11 sec   (4585 perm/sec)   p_kst 4.400000e-04   p_cons 9.746000e-02   p_joint 0

Joint ci ratio: 3.919935e+00	ci left: 0	ci right 6.147943e-05	k: 0	n:60000
Cons ci ratio: 4.855554e-02	ci left: 9.559921e-02	ci right 1.003731e-01	k: 5878	n:60000
KS ci ratio: 7.406313e-01	ci left: 2.965731e-04	ci right 6.546594e-04	k: 27	n:60000
TRIM28   60000 perm   13 sec   (4502 perm/sec)   p_kst 4.500000e-04   p_cons 9.796667e-02   p_joint 0

Joint ci ratio: 3.919944e+00	ci left: 0	ci right 5.269689e-05	k: 0	n:70000
Cons ci ratio: 4.507709e-02	ci left: 9.529795e-02	ci right 9.970691e-02	k: 6824	n:70000
KS ci ratio: 7.155323e-01	ci left: 2.774706e-04	ci right 5.949296e-04	k: 29	n:70000
TRIM28   70000 perm   16 sec   (4423 perm/sec)   p_kst 4.142857e-04   p_cons 9.748571e-02   p_joint 0

Joint ci ratio: 3.919951e+00	ci left: 0	ci right 4.610993e-05	k: 0	n:80000
Cons ci ratio: 4.207619e-02	ci left: 9.581190e-02	ci right 9.994231e-02	k: 7829	n:80000
KS ci ratio: 6.624518e-01	ci left: 2.943422e-04	ci right 5.938447e-04	k: 34	n:80000
TRIM28   80000 perm   18 sec   (4347 perm/sec)   p_kst 4.250000e-04   p_cons 9.786250e-02   p_joint 0

Joint ci ratio: 3.919956e+00	ci left: 0	ci right 4.098671e-05	k: 0	n:90000
Cons ci ratio: 3.949303e-02	ci left: 9.671476e-02	ci right 1.006223e-01	k: 8879	n:90000
KS ci ratio: 6.443080e-01	ci left: 2.801703e-04	ci right 5.537260e-04	k: 36	n:90000
TRIM28   90000 perm   21 sec   (4274 perm/sec)   p_kst 4.000000e-04   p_cons 9.865556e-02   p_joint 0

Joint ci ratio: 3.919961e+00	ci left: 0	ci right 3.688811e-05	k: 0	n:100000
Cons ci ratio: 3.747833e-02	ci left: 9.675890e-02	ci right 1.004644e-01	k: 9860	n:100000
KS ci ratio: 6.275768e-01	ci left: 2.689242e-04	ci right 5.215428e-04	k: 38	n:100000
TRIM28   100000 perm   24 sec   (4205 perm/sec)   p_kst 3.800000e-04   p_cons 9.860000e-02   p_joint 0

Joint ci ratio: 3.919964e+00	ci left: 0	ci right 3.353471e-05	k: 0	n:110000
Cons ci ratio: 3.583158e-02	ci left: 9.636632e-02	ci right 9.989127e-02	k: 10793	n:110000
KS ci ratio: 6.047509e-01	ci left: 2.674884e-04	ci right 5.056130e-04	k: 41	n:110000
TRIM28   110000 perm   27 sec   (4130 perm/sec)   p_kst 3.727273e-04   p_cons 9.811818e-02   p_joint 0

Joint ci ratio: 3.919967e+00	ci left: 0	ci right 3.074019e-05	k: 0	n:120000
Cons ci ratio: 3.428237e-02	ci left: 9.656319e-02	ci right 9.993959e-02	k: 11789	n:120000
KS ci ratio: 5.842471e-01	ci left: 2.664328e-04	ci right 4.922020e-04	k: 44	n:120000
TRIM28   120000 perm   30 sec   (4066 perm/sec)   p_kst 3.666667e-04   p_cons 9.824167e-02   p_joint 0

Joint ci ratio: 1.959962e+00	ci left: 4.759042e-06	ci right 6.743907e-05	k: 3	n:130000
Cons ci ratio: 3.292101e-02	ci left: 9.671727e-02	ci right 9.996221e-02	k: 12783	n:130000
KS ci ratio: 5.434954e-01	ci left: 2.921124e-04	ci right 5.157803e-04	k: 51	n:130000
TRIM28   130000 perm   32 sec   (4000 perm/sec)   p_kst 3.923077e-04   p_cons 9.833077e-02   p_joint 2.307692e-05

Joint ci ratio: 1.959965e+00	ci left: 4.419108e-06	ci right 6.262209e-05	k: 3	n:140000
Cons ci ratio: 3.174956e-02	ci left: 9.663176e-02	ci right 9.975633e-02	k: 13746	n:140000
KS ci ratio: 5.102312e-01	ci left: 3.145991e-04	ci right 5.355279e-04	k: 58	n:140000
TRIM28   140000 perm   36 sec   (3941 perm/sec)   p_kst 4.142857e-04   p_cons 9.818571e-02   p_joint 2.142857e-05

Joint ci ratio: 1.959967e+00	ci left: 4.124500e-06	ci right 5.844736e-05	k: 3	n:150000
Cons ci ratio: 3.070760e-02	ci left: 9.648661e-02	ci right 9.950228e-02	k: 14698	n:150000
KS ci ratio: 4.937682e-01	ci left: 3.169145e-04	ci right 5.298438e-04	k: 62	n:150000
TRIM28   150000 perm   39 sec   (3881 perm/sec)   p_kst 4.133333e-04   p_cons 9.798667e-02   p_joint 2.000000e-05

Joint ci ratio: 1.959969e+00	ci left: 3.866717e-06	ci right 5.479447e-05	k: 3	n:160000
Cons ci ratio: 2.975875e-02	ci left: 9.637972e-02	ci right 9.929737e-02	k: 15653	n:160000
KS ci ratio: 4.684257e-01	ci left: 3.355533e-04	ci right 5.457432e-04	k: 69	n:160000
TRIM28   160000 perm   42 sec   (3822 perm/sec)   p_kst 4.312500e-04   p_cons 9.783125e-02   p_joint 1.875000e-05

Joint ci ratio: 1.959971e+00	ci left: 3.639263e-06	ci right 5.157132e-05	k: 3	n:170000
Cons ci ratio: 2.889757e-02	ci left: 9.625747e-02	ci right 9.908568e-02	k: 16603	n:170000
KS ci ratio: 4.555902e-01	ci left: 3.366049e-04	ci right 5.398910e-04	k: 73	n:170000
TRIM28   170000 perm   45 sec   (3766 perm/sec)   p_kst 4.294118e-04   p_cons 9.766471e-02   p_joint 1.764706e-05

Joint ci ratio: 2.263188e+00	ci left: 1.345610e-06	ci right 4.013657e-05	k: 2	n:180000
Cons ci ratio: 2.808844e-02	ci left: 9.626584e-02	ci right 9.901380e-02	k: 17574	n:180000
KS ci ratio: 4.466287e-01	ci left: 3.326771e-04	ci right 5.284460e-04	k: 76	n:180000
TRIM28   180000 perm   49 sec   (3708 perm/sec)   p_kst 4.222222e-04   p_cons 9.763333e-02   p_joint 1.111111e-05

Joint ci ratio: 2.263189e+00	ci left: 1.274788e-06	ci right 3.802415e-05	k: 2	n:190000
Cons ci ratio: 2.735186e-02	ci left: 9.622201e-02	ci right 9.889555e-02	k: 18535	n:190000
KS ci ratio: 4.437603e-01	ci left: 3.198402e-04	ci right 5.064838e-04	k: 77	n:190000
TRIM28   190000 perm   52 sec   (3651 perm/sec)   p_kst 4.052632e-04   p_cons 9.755263e-02   p_joint 1.052632e-05

Joint ci ratio: 2.263190e+00	ci left: 1.211049e-06	ci right 3.612297e-05	k: 2	n:200000
Cons ci ratio: 2.664687e-02	ci left: 9.633749e-02	ci right 9.894419e-02	k: 19527	n:200000
KS ci ratio: 4.328017e-01	ci left: 3.216411e-04	ci right 5.033533e-04	k: 81	n:200000
TRIM28   200000 perm   56 sec   (3587 perm/sec)   p_kst 4.050000e-04   p_cons 9.763500e-02   p_joint 1.000000e-05

Joint ci ratio: 2.263192e+00	ci left: 1.153380e-06	ci right 3.440285e-05	k: 2	n:210000
Cons ci ratio: 2.600989e-02	ci left: 9.633388e-02	ci right 9.887724e-02	k: 20496	n:210000
KS ci ratio: 4.276205e-01	ci left: 3.148168e-04	ci right 4.899339e-04	k: 83	n:210000
TRIM28   210000 perm   60 sec   (3522 perm/sec)   p_kst 3.952381e-04   p_cons 9.760000e-02   p_joint 9.523810e-06

Joint ci ratio: 2.263192e+00	ci left: 1.100953e-06	ci right 3.283910e-05	k: 2	n:220000
Cons ci ratio: 2.539881e-02	ci left: 9.645331e-02	ci right 9.893912e-02	k: 21492	n:220000
KS ci ratio: 4.154342e-01	ci left: 3.208237e-04	ci right 4.927883e-04	k: 88	n:220000
TRIM28   220000 perm   63 sec   (3476 perm/sec)   p_kst 4.000000e-04   p_cons 9.769091e-02   p_joint 9.090909e-06

Joint ci ratio: 2.263193e+00	ci left: 1.053086e-06	ci right 3.141133e-05	k: 2	n:230000
Cons ci ratio: 2.484969e-02	ci left: 9.641599e-02	ci right 9.884634e-02	k: 22454	n:230000
KS ci ratio: 4.064020e-01	ci left: 3.224683e-04	ci right 4.905423e-04	k: 92	n:230000
TRIM28   230000 perm   67 sec   (3424 perm/sec)   p_kst 4.000000e-04   p_cons 9.762609e-02   p_joint 8.695652e-06

Joint ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
Cons ci ratio: 2.431861e-02	ci left: 9.649834e-02	ci right 9.887805e-02	k: 23444	n:240000
KS ci ratio: 3.958981e-01	ci left: 3.277638e-04	ci right 4.930271e-04	k: 97	n:240000
TRIM28   240000 perm   71 sec   (3371 perm/sec)   p_kst 4.041667e-04   p_cons 9.768333e-02   p_joint 4.166667e-06

Joint ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
Cons ci ratio: 2.385374e-02	ci left: 9.632794e-02	ci right 9.865740e-02	k: 24372	n:250000
KS ci ratio: 3.938960e-01	ci left: 3.182556e-04	ci right 4.777020e-04	k: 98	n:250000
TRIM28   250000 perm   75 sec   (3328 perm/sec)   p_kst 3.920000e-04   p_cons 9.748800e-02   p_joint 4.000000e-06

Joint ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
Cons ci ratio: 2.336546e-02	ci left: 9.653835e-02	ci right 9.882447e-02	k: 25396	n:260000
KS ci ratio: 3.899781e-01	ci left: 3.129490e-04	ci right 4.677759e-04	k: 100	n:260000
TRIM28   260000 perm   79 sec   (3286 perm/sec)   p_kst 3.846154e-04   p_cons 9.767692e-02   p_joint 3.846154e-06

Joint ci ratio: 2.263196e+00	ci left: 8.970727e-07	ci right 2.675784e-05	k: 2	n:270000
Cons ci ratio: 2.292715e-02	ci left: 9.657149e-02	ci right 9.881493e-02	k: 26376	n:270000
KS ci ratio: 3.824777e-01	ci left: 3.147347e-04	ci right 4.666973e-04	k: 104	n:270000
TRIM28   270000 perm   83 sec   (3245 perm/sec)   p_kst 3.851852e-04   p_cons 9.768889e-02   p_joint 7.407407e-06

Joint ci ratio: 1.481600e+00	ci left: 7.863947e-06	ci right 4.664039e-05	k: 6	n:280000
Cons ci ratio: 2.249894e-02	ci left: 9.670924e-02	ci right 9.891338e-02	k: 27386	n:280000
KS ci ratio: 3.719955e-01	ci left: 3.228915e-04	ci right 4.734800e-04	k: 110	n:280000
TRIM28   280000 perm   87 sec   (3206 perm/sec)   p_kst 3.928571e-04   p_cons 9.780714e-02   p_joint 2.142857e-05

Joint ci ratio: 1.481600e+00	ci left: 7.592775e-06	ci right 4.503212e-05	k: 6	n:290000
Cons ci ratio: 2.213406e-02	ci left: 9.651875e-02	ci right 9.868241e-02	k: 28303	n:290000
KS ci ratio: 3.654688e-01	ci left: 3.242725e-04	ci right 4.722186e-04	k: 114	n:290000
TRIM28   290000 perm   92 sec   (3168 perm/sec)   p_kst 3.931034e-04   p_cons 9.759655e-02   p_joint 2.068966e-05

Joint ci ratio: 1.481601e+00	ci left: 7.339682e-06	ci right 4.353107e-05	k: 6	n:300000
Cons ci ratio: 2.175504e-02	ci left: 9.659333e-02	ci right 9.872112e-02	k: 29296	n:300000
KS ci ratio: 3.623328e-01	ci left: 3.195203e-04	ci right 4.637520e-04	k: 116	n:300000
TRIM28   300000 perm   96 sec   (3131 perm/sec)   p_kst 3.866667e-04   p_cons 9.765333e-02   p_joint 2.000000e-05

Joint ci ratio: 1.385909e+00	ci left: 9.078637e-06	ci right 4.652420e-05	k: 7	n:310000
Cons ci ratio: 2.139210e-02	ci left: 9.668587e-02	ci right 9.877972e-02	k: 30296	n:310000
KS ci ratio: 3.562935e-01	ci left: 3.209518e-04	ci right 4.628553e-04	k: 120	n:310000
TRIM28   310000 perm   100 sec   (3095 perm/sec)   p_kst 3.870968e-04   p_cons 9.772903e-02   p_joint 2.258065e-05

Joint ci ratio: 1.385910e+00	ci left: 8.794928e-06	ci right 4.507034e-05	k: 7	n:320000
Cons ci ratio: 2.104190e-02	ci left: 9.681333e-02	ci right 9.887521e-02	k: 31309	n:320000
KS ci ratio: 3.548319e-01	ci left: 3.137677e-04	ci right 4.517945e-04	k: 121	n:320000
TRIM28   320000 perm   105 sec   (3059 perm/sec)   p_kst 3.781250e-04   p_cons 9.784063e-02   p_joint 2.187500e-05

Joint ci ratio: 1.385910e+00	ci left: 8.528414e-06	ci right 4.370459e-05	k: 7	n:330000
Cons ci ratio: 2.071367e-02	ci left: 9.688808e-02	ci right 9.891898e-02	k: 32307	n:330000
KS ci ratio: 3.477763e-01	ci left: 3.180744e-04	ci right 4.545866e-04	k: 126	n:330000
TRIM28   330000 perm   109 sec   (3024 perm/sec)   p_kst 3.818182e-04   p_cons 9.790000e-02   p_joint 2.121212e-05

Joint ci ratio: 1.385911e+00	ci left: 8.277577e-06	ci right 4.241917e-05	k: 7	n:340000
Cons ci ratio: 2.038237e-02	ci left: 9.711385e-02	ci right 9.911654e-02	k: 33358	n:340000
KS ci ratio: 3.411255e-01	ci left: 3.221533e-04	ci right 4.571893e-04	k: 131	n:340000
TRIM28   340000 perm   114 sec   (2990 perm/sec)   p_kst 3.852941e-04   p_cons 9.811176e-02   p_joint 2.058824e-05

Joint ci ratio: 1.481604e+00	ci left: 6.291152e-06	ci right 3.731241e-05	k: 6	n:350000
Cons ci ratio: 2.009789e-02	ci left: 9.705105e-02	ci right 9.902418e-02	k: 34312	n:350000
KS ci ratio: 3.312337e-01	ci left: 3.338775e-04	ci right 4.689053e-04	k: 139	n:350000
TRIM28   350000 perm   118 sec   (2957 perm/sec)   p_kst 3.971429e-04   p_cons 9.803429e-02   p_joint 1.714286e-05

Joint ci ratio: 1.753063e+00	ci left: 3.027412e-06	ci right 2.844861e-05	k: 4	n:360000
Cons ci ratio: 1.981940e-02	ci left: 9.704170e-02	ci right 9.898700e-02	k: 35284	n:360000
KS ci ratio: 3.254723e-01	ci left: 3.373474e-04	ci right 4.709097e-04	k: 144	n:360000
TRIM28   360000 perm   124 sec   (2912 perm/sec)   p_kst 4.000000e-04   p_cons 9.801111e-02   p_joint 1.111111e-05

Joint ci ratio: 1.753063e+00	ci left: 2.945590e-06	ci right 2.767974e-05	k: 4	n:370000
Cons ci ratio: 1.955725e-02	ci left: 9.698729e-02	ci right 9.890549e-02	k: 36239	n:370000
KS ci ratio: 3.221571e-01	ci left: 3.356790e-04	ci right 4.669474e-04	k: 147	n:370000
TRIM28   370000 perm   128 sec   (2880 perm/sec)   p_kst 3.972973e-04   p_cons 9.794324e-02   p_joint 1.081081e-05

Joint ci ratio: 1.753063e+00	ci left: 2.868074e-06	ci right 2.695133e-05	k: 4	n:380000
Cons ci ratio: 1.929920e-02	ci left: 9.699094e-02	ci right 9.888362e-02	k: 37215	n:380000
KS ci ratio: 3.178900e-01	ci left: 3.365262e-04	ci right 4.660283e-04	k: 151	n:380000
TRIM28   380000 perm   133 sec   (2847 perm/sec)   p_kst 3.973684e-04   p_cons 9.793421e-02   p_joint 1.052632e-05

Joint ci ratio: 1.753064e+00	ci left: 2.794533e-06	ci right 2.626027e-05	k: 4	n:390000
Cons ci ratio: 1.903618e-02	ci left: 9.713243e-02	ci right 9.900175e-02	k: 38245	n:390000
KS ci ratio: 3.158198e-01	ci left: 3.326176e-04	ci right 4.596137e-04	k: 153	n:390000
TRIM28   390000 perm   138 sec   (2818 perm/sec)   p_kst 3.923077e-04   p_cons 9.806410e-02   p_joint 1.025641e-05

Joint ci ratio: 1.753064e+00	ci left: 2.724670e-06	ci right 2.560377e-05	k: 4	n:400000
Cons ci ratio: 1.879770e-02	ci left: 9.713506e-02	ci right 9.898076e-02	k: 39222	n:400000
KS ci ratio: 3.127883e-01	ci left: 3.312106e-04	ci right 4.562131e-04	k: 156	n:400000
TRIM28   400000 perm   144 sec   (2787 perm/sec)   p_kst 3.900000e-04   p_cons 9.805500e-02   p_joint 1.000000e-05

Joint ci ratio: 1.753064e+00	ci left: 2.658214e-06	ci right 2.497929e-05	k: 4	n:410000
Cons ci ratio: 1.856719e-02	ci left: 9.714499e-02	ci right 9.896801e-02	k: 40202	n:410000
KS ci ratio: 3.127898e-01	ci left: 3.231321e-04	ci right 4.450863e-04	k: 156	n:410000
TRIM28   410000 perm   149 sec   (2756 perm/sec)   p_kst 3.804878e-04   p_cons 9.805366e-02   p_joint 9.756098e-06

Joint ci ratio: 1.753065e+00	ci left: 2.594923e-06	ci right 2.438455e-05	k: 4	n:420000
Cons ci ratio: 1.834175e-02	ci left: 9.718541e-02	ci right 9.898680e-02	k: 41195	n:420000
KS ci ratio: 3.069781e-01	ci left: 3.286137e-04	ci right 4.498818e-04	k: 162	n:420000
TRIM28   420000 perm   154 sec   (2728 perm/sec)   p_kst 3.857143e-04   p_cons 9.808333e-02   p_joint 9.523810e-06

Joint ci ratio: 1.753065e+00	ci left: 2.534576e-06	ci right 2.381748e-05	k: 4	n:430000
Cons ci ratio: 1.812552e-02	ci left: 9.721249e-02	ci right 9.899293e-02	k: 42183	n:430000
KS ci ratio: 3.051127e-01	ci left: 3.252654e-04	ci right 4.444268e-04	k: 164	n:430000
TRIM28   430000 perm   159 sec   (2700 perm/sec)   p_kst 3.813953e-04   p_cons 9.810000e-02   p_joint 9.302326e-06

Joint ci ratio: 1.753065e+00	ci left: 2.476972e-06	ci right 2.327617e-05	k: 4	n:440000
Cons ci ratio: 1.792136e-02	ci left: 9.719319e-02	ci right 9.895301e-02	k: 43151	n:440000
KS ci ratio: 2.971153e-01	ci left: 3.367830e-04	ci right 4.563207e-04	k: 173	n:440000
TRIM28   440000 perm   165 sec   (2669 perm/sec)   p_kst 3.931818e-04   p_cons 9.807045e-02   p_joint 9.090909e-06

Joint ci ratio: 1.753066e+00	ci left: 2.421928e-06	ci right 2.275893e-05	k: 4	n:450000
Cons ci ratio: 1.773286e-02	ci left: 9.708632e-02	ci right 9.882553e-02	k: 44079	n:450000
KS ci ratio: 2.921208e-01	ci left: 3.416472e-04	ci right 4.604959e-04	k: 179	n:450000
TRIM28   450000 perm   170 sec   (2643 perm/sec)   p_kst 3.977778e-04   p_cons 9.795333e-02   p_joint 8.888889e-06

Joint ci ratio: 1.753066e+00	ci left: 2.369277e-06	ci right 2.226417e-05	k: 4	n:460000
Cons ci ratio: 1.754155e-02	ci left: 9.707081e-02	ci right 9.879078e-02	k: 45047	n:460000
KS ci ratio: 2.881459e-01	ci left: 3.442988e-04	ci right 4.621433e-04	k: 184	n:460000
TRIM28   460000 perm   176 sec   (2613 perm/sec)   p_kst 4.000000e-04   p_cons 9.792826e-02   p_joint 8.695652e-06

Joint ci ratio: 1.753066e+00	ci left: 2.318867e-06	ci right 2.179047e-05	k: 4	n:470000
Cons ci ratio: 1.735128e-02	ci left: 9.710691e-02	ci right 9.880868e-02	k: 46039	n:470000
KS ci ratio: 2.866015e-01	ci left: 3.409218e-04	ci right 4.568718e-04	k: 186	n:470000
TRIM28   470000 perm   182 sec   (2588 perm/sec)   p_kst 3.957447e-04   p_cons 9.795532e-02   p_joint 8.510638e-06

Joint ci ratio: 1.753066e+00	ci left: 2.270557e-06	ci right 2.133650e-05	k: 4	n:480000
Cons ci ratio: 1.717051e-02	ci left: 9.710633e-02	ci right 9.879019e-02	k: 47014	n:480000
KS ci ratio: 2.835845e-01	ci left: 3.415569e-04	ci right 4.562812e-04	k: 190	n:480000
TRIM28   480000 perm   187 sec   (2563 perm/sec)   p_kst 3.958333e-04   p_cons 9.794583e-02   p_joint 8.333333e-06

Joint ci ratio: 1.753067e+00	ci left: 2.224219e-06	ci right 2.090107e-05	k: 4	n:490000
Cons ci ratio: 1.699293e-02	ci left: 9.713026e-02	ci right 9.879694e-02	k: 48001	n:490000
KS ci ratio: 2.821119e-01	ci left: 3.383784e-04	ci right 4.513399e-04	k: 192	n:490000
TRIM28   490000 perm   194 sec   (2528 perm/sec)   p_kst 3.918367e-04   p_cons 9.796122e-02   p_joint 8.163265e-06

Joint ci ratio: 1.600322e+00	ci left: 3.246980e-06	ci right 2.333651e-05	k: 5	n:500000
Cons ci ratio: 1.682550e-02	ci left: 9.710351e-02	ci right 9.875315e-02	k: 48963	n:500000
KS ci ratio: 2.806620e-01	ci left: 3.353285e-04	ci right 4.465947e-04	k: 194	n:500000
TRIM28   500000 perm   200 sec   (2504 perm/sec)   p_kst 3.880000e-04   p_cons 9.792600e-02   p_joint 1.000000e-05

Joint ci ratio: 1.600322e+00	ci left: 3.183314e-06	ci right 2.287893e-05	k: 5	n:510000
Cons ci ratio: 1.665922e-02	ci left: 9.711695e-02	ci right 9.875036e-02	k: 49945	n:510000
KS ci ratio: 2.785279e-01	ci left: 3.342234e-04	ci right 4.441317e-04	k: 197	n:510000
TRIM28   510000 perm   206 sec   (2479 perm/sec)   p_kst 3.862745e-04   p_cons 9.793137e-02   p_joint 9.803922e-06

Joint ci ratio: 1.600323e+00	ci left: 3.122096e-06	ci right 2.243896e-05	k: 5	n:520000
Cons ci ratio: 1.649904e-02	ci left: 9.711654e-02	ci right 9.873409e-02	k: 50920	n:520000
KS ci ratio: 2.757564e-01	ci left: 3.349538e-04	ci right 4.438162e-04	k: 201	n:520000
TRIM28   520000 perm   212 sec   (2455 perm/sec)   p_kst 3.865385e-04   p_cons 9.792308e-02   p_joint 9.615385e-06

Joint ci ratio: 1.481610e+00	ci left: 4.154528e-06	ci right 2.464035e-05	k: 6	n:530000
Cons ci ratio: 1.632961e-02	ci left: 9.726474e-02	ci right 9.886796e-02	k: 51974	n:530000
KS ci ratio: 2.724054e-01	ci left: 3.374197e-04	ci right 4.455229e-04	k: 206	n:530000
TRIM28   530000 perm   218 sec   (2429 perm/sec)   p_kst 3.886792e-04   p_cons 9.806415e-02   p_joint 1.132075e-05

Joint ci ratio: 1.481610e+00	ci left: 4.077593e-06	ci right 2.418405e-05	k: 6	n:540000
Cons ci ratio: 1.618273e-02	ci left: 9.721747e-02	ci right 9.880537e-02	k: 52925	n:540000
KS ci ratio: 2.691736e-01	ci left: 3.398019e-04	ci right 4.471587e-04	k: 211	n:540000
TRIM28   540000 perm   225 sec   (2403 perm/sec)   p_kst 3.907407e-04   p_cons 9.800926e-02   p_joint 1.111111e-05

Joint ci ratio: 1.481610e+00	ci left: 4.003454e-06	ci right 2.374435e-05	k: 6	n:550000
Cons ci ratio: 1.603512e-02	ci left: 9.722271e-02	ci right 9.879607e-02	k: 53904	n:550000
KS ci ratio: 2.666696e-01	ci left: 3.404080e-04	ci right 4.467886e-04	k: 215	n:550000
TRIM28   550000 perm   231 sec   (2378 perm/sec)   p_kst 3.909091e-04   p_cons 9.800727e-02   p_joint 1.090909e-05

Joint ci ratio: 1.481610e+00	ci left: 3.931964e-06	ci right 2.332034e-05	k: 6	n:560000
Cons ci ratio: 1.589919e-02	ci left: 9.714242e-02	ci right 9.870103e-02	k: 54835	n:560000
KS ci ratio: 2.654440e-01	ci left: 3.376625e-04	ci right 4.426195e-04	k: 217	n:560000
TRIM28   560000 perm   238 sec   (2356 perm/sec)   p_kst 3.875000e-04   p_cons 9.791964e-02   p_joint 1.071429e-05

Joint ci ratio: 1.481610e+00	ci left: 3.862982e-06	ci right 2.291122e-05	k: 6	n:570000
Cons ci ratio: 1.575320e-02	ci left: 9.721534e-02	ci right 9.876068e-02	k: 55852	n:570000
KS ci ratio: 2.642351e-01	ci left: 3.350143e-04	ci right 4.385955e-04	k: 219	n:570000
TRIM28   570000 perm   244 sec   (2333 perm/sec)   p_kst 3.842105e-04   p_cons 9.798596e-02   p_joint 1.052632e-05

Joint ci ratio: 1.481611e+00	ci left: 3.796379e-06	ci right 2.251620e-05	k: 6	n:580000
Cons ci ratio: 1.561877e-02	ci left: 9.719991e-02	ci right 9.873170e-02	k: 56819	n:580000
KS ci ratio: 2.612824e-01	ci left: 3.372912e-04	ci right 4.402206e-04	k: 224	n:580000
TRIM28   580000 perm   251 sec   (2310 perm/sec)   p_kst 3.862069e-04   p_cons 9.796379e-02   p_joint 1.034483e-05

Joint ci ratio: 1.481611e+00	ci left: 3.732033e-06	ci right 2.213457e-05	k: 6	n:590000
Cons ci ratio: 1.548861e-02	ci left: 9.717492e-02	ci right 9.869344e-02	k: 57780	n:590000
KS ci ratio: 2.567568e-01	ci left: 3.442537e-04	ci right 4.471967e-04	k: 232	n:590000
TRIM28   590000 perm   258 sec   (2290 perm/sec)   p_kst 3.932203e-04   p_cons 9.793220e-02   p_joint 1.016949e-05

Joint ci ratio: 1.306656e+00	ci left: 5.756404e-06	ci right 2.627181e-05	k: 8	n:600000
Cons ci ratio: 1.536267e-02	ci left: 9.713919e-02	ci right 9.864470e-02	k: 58734	n:600000
KS ci ratio: 2.545809e-01	ci left: 3.447556e-04	ci right 4.468363e-04	k: 236	n:600000
TRIM28   600000 perm   264 sec   (2269 perm/sec)   p_kst 3.933333e-04   p_cons 9.789000e-02   p_joint 1.333333e-05

Joint ci ratio: 1.306656e+00	ci left: 5.662036e-06	ci right 2.584113e-05	k: 8	n:610000
Cons ci ratio: 1.523367e-02	ci left: 9.717493e-02	ci right 9.866823e-02	k: 59731	n:610000
KS ci ratio: 2.509019e-01	ci left: 3.498526e-04	ci right 4.517117e-04	k: 243	n:610000
TRIM28   610000 perm   271 sec   (2249 perm/sec)   p_kst 3.983607e-04   p_cons 9.791967e-02   p_joint 1.311475e-05

Joint ci ratio: 1.239602e+00	ci left: 6.637719e-06	ci right 2.755595e-05	k: 9	n:620000
Cons ci ratio: 1.511186e-02	ci left: 9.716295e-02	ci right 9.864403e-02	k: 60699	n:620000
KS ci ratio: 2.483698e-01	ci left: 3.517699e-04	ci right 4.529940e-04	k: 248	n:620000
TRIM28   620000 perm   278 sec   (2230 perm/sec)   p_kst 4.000000e-04   p_cons 9.790161e-02   p_joint 1.451613e-05

Joint ci ratio: 1.239602e+00	ci left: 6.532358e-06	ci right 2.711856e-05	k: 9	n:630000
Cons ci ratio: 1.499280e-02	ci left: 9.715299e-02	ci right 9.862214e-02	k: 61668	n:630000
KS ci ratio: 2.439984e-01	ci left: 3.595909e-04	ci right 4.609685e-04	k: 257	n:630000
TRIM28   630000 perm   285 sec   (2209 perm/sec)   p_kst 4.079365e-04   p_cons 9.788571e-02   p_joint 1.428571e-05

Joint ci ratio: 1.181913e+00	ci left: 7.492819e-06	ci right 2.873474e-05	k: 10	n:640000
Cons ci ratio: 1.486454e-02	ci left: 9.728509e-02	ci right 9.874355e-02	k: 62728	n:640000
KS ci ratio: 2.430585e-01	ci left: 3.569066e-04	ci right 4.570813e-04	k: 259	n:640000
TRIM28   640000 perm   293 sec   (2187 perm/sec)   p_kst 4.046875e-04   p_cons 9.801250e-02   p_joint 1.562500e-05

Joint ci ratio: 1.181914e+00	ci left: 7.377545e-06	ci right 2.829267e-05	k: 10	n:650000
Cons ci ratio: 1.475709e-02	ci left: 9.720310e-02	ci right 9.864971e-02	k: 63651	n:650000
KS ci ratio: 2.416685e-01	ci left: 3.557508e-04	ci right 4.549445e-04	k: 262	n:650000
TRIM28   650000 perm   300 sec   (2165 perm/sec)   p_kst 4.030769e-04   p_cons 9.792462e-02   p_joint 1.538462e-05

Joint ci ratio: 1.181914e+00	ci left: 7.265764e-06	ci right 2.786400e-05	k: 10	n:660000
Cons ci ratio: 1.464779e-02	ci left: 9.717348e-02	ci right 9.860884e-02	k: 64607	n:660000
KS ci ratio: 2.407552e-01	ci left: 3.532077e-04	ci right 4.512646e-04	k: 264	n:660000
TRIM28   660000 perm   307 sec   (2147 perm/sec)   p_kst 4.000000e-04   p_cons 9.788939e-02   p_joint 1.515152e-05

Joint ci ratio: 1.181914e+00	ci left: 7.157319e-06	ci right 2.744812e-05	k: 10	n:670000
Cons ci ratio: 1.454175e-02	ci left: 9.713436e-02	ci right 9.855867e-02	k: 65556	n:670000
KS ci ratio: 2.398521e-01	ci left: 3.507413e-04	ci right 4.476938e-04	k: 266	n:670000
TRIM28   670000 perm   315 sec   (2130 perm/sec)   p_kst 3.970149e-04   p_cons 9.784478e-02   p_joint 1.492537e-05

Joint ci ratio: 1.181914e+00	ci left: 7.052064e-06	ci right 2.704447e-05	k: 10	n:680000
Cons ci ratio: 1.443112e-02	ci left: 9.717998e-02	ci right 9.859403e-02	k: 66562	n:680000
KS ci ratio: 2.385161e-01	ci left: 3.497307e-04	ci right 4.457858e-04	k: 269	n:680000
TRIM28   680000 perm   322 sec   (2113 perm/sec)   p_kst 3.955882e-04   p_cons 9.788529e-02   p_joint 1.470588e-05

Joint ci ratio: 1.131596e+00	ci left: 7.958229e-06	ci right 2.852451e-05	k: 11	n:690000
Cons ci ratio: 1.432227e-02	ci left: 9.723299e-02	ci right 9.863705e-02	k: 67574	n:690000
KS ci ratio: 2.359089e-01	ci left: 3.528411e-04	ci right 4.485365e-04	k: 275	n:690000
TRIM28   690000 perm   329 sec   (2096 perm/sec)   p_kst 3.985507e-04   p_cons 9.793333e-02   p_joint 1.594203e-05

Joint ci ratio: 1.131596e+00	ci left: 7.844540e-06	ci right 2.811702e-05	k: 11	n:700000
Cons ci ratio: 1.422401e-02	ci left: 9.718342e-02	ci right 9.857706e-02	k: 68515	n:700000
KS ci ratio: 2.325618e-01	ci left: 3.585586e-04	ci right 4.542267e-04	k: 283	n:700000
TRIM28   700000 perm   337 sec   (2079 perm/sec)   p_kst 4.042857e-04   p_cons 9.787857e-02   p_joint 1.571429e-05

Joint ci ratio: 1.131596e+00	ci left: 7.734053e-06	ci right 2.772101e-05	k: 11	n:710000
Cons ci ratio: 1.412267e-02	ci left: 9.719845e-02	ci right 9.858230e-02	k: 69501	n:710000
KS ci ratio: 2.317476e-01	ci left: 3.561615e-04	ci right 4.508096e-04	k: 285	n:710000
TRIM28   710000 perm   344 sec   (2062 perm/sec)   p_kst 4.014085e-04   p_cons 9.788873e-02   p_joint 1.549296e-05

Joint ci ratio: 1.131596e+00	ci left: 7.626636e-06	ci right 2.733600e-05	k: 11	n:720000
Cons ci ratio: 1.402579e-02	ci left: 9.718403e-02	ci right 9.855810e-02	k: 70466	n:720000
KS ci ratio: 2.301438e-01	ci left: 3.564489e-04	ci right 4.504248e-04	k: 289	n:720000
TRIM28   720000 perm   352 sec   (2046 perm/sec)   p_kst 4.013889e-04   p_cons 9.786944e-02   p_joint 1.527778e-05

Joint ci ratio: 1.131596e+00	ci left: 7.522161e-06	ci right 2.696154e-05	k: 11	n:730000
Cons ci ratio: 1.393314e-02	ci left: 9.714135e-02	ci right 9.850568e-02	k: 71410	n:730000
KS ci ratio: 2.289627e-01	ci left: 3.554393e-04	ci right 4.486001e-04	k: 292	n:730000
TRIM28   730000 perm   360 sec   (2029 perm/sec)   p_kst 4.000000e-04   p_cons 9.782192e-02   p_joint 1.506849e-05

Joint ci ratio: 1.131597e+00	ci left: 7.420510e-06	ci right 2.659719e-05	k: 11	n:740000
Cons ci ratio: 1.383807e-02	ci left: 9.715375e-02	ci right 9.850886e-02	k: 72394	n:740000
KS ci ratio: 2.274157e-01	ci left: 3.557325e-04	ci right 4.482518e-04	k: 296	n:740000
TRIM28   740000 perm   368 sec   (2012 perm/sec)   p_kst 4.000000e-04   p_cons 9.782973e-02   p_joint 1.486486e-05

Joint ci ratio: 1.131597e+00	ci left: 7.321569e-06	ci right 2.624257e-05	k: 11	n:750000
Cons ci ratio: 1.374803e-02	ci left: 9.712597e-02	ci right 9.847181e-02	k: 73348	n:750000
KS ci ratio: 2.262759e-01	ci left: 3.547621e-04	ci right 4.465021e-04	k: 299	n:750000
TRIM28   750000 perm   376 sec   (1995 perm/sec)   p_kst 3.986667e-04   p_cons 9.779733e-02   p_joint 1.466667e-05

Joint ci ratio: 1.131597e+00	ci left: 7.225232e-06	ci right 2.589727e-05	k: 11	n:760000
Cons ci ratio: 1.365861e-02	ci left: 9.711337e-02	ci right 9.845022e-02	k: 74313	n:760000
KS ci ratio: 2.247823e-01	ci left: 3.550600e-04	ci right 4.461870e-04	k: 303	n:760000
TRIM28   760000 perm   384 sec   (1978 perm/sec)   p_kst 3.986842e-04   p_cons 9.778026e-02   p_joint 1.447368e-05

Joint ci ratio: 1.087203e+00	ci left: 8.052720e-06	ci right 2.722268e-05	k: 12	n:770000
Cons ci ratio: 1.356961e-02	ci left: 9.711797e-02	ci right 9.844610e-02	k: 75291	n:770000
KS ci ratio: 2.222378e-01	ci left: 3.590309e-04	ci right 4.499913e-04	k: 310	n:770000
TRIM28   770000 perm   392 sec   (1962 perm/sec)   p_kst 4.025974e-04   p_cons 9.778052e-02   p_joint 1.558442e-05

Joint ci ratio: 1.087203e+00	ci left: 7.949480e-06	ci right 2.687367e-05	k: 12	n:780000
Cons ci ratio: 1.347948e-02	ci left: 9.715954e-02	ci right 9.847934e-02	k: 76298	n:780000
KS ci ratio: 2.204724e-01	ci left: 3.604829e-04	ci right 4.509873e-04	k: 315	n:780000
TRIM28   780000 perm   401 sec   (1945 perm/sec)   p_kst 4.038462e-04   p_cons 9.781795e-02   p_joint 1.538462e-05

Joint ci ratio: 1.087203e+00	ci left: 7.848853e-06	ci right 2.653350e-05	k: 12	n:790000
Cons ci ratio: 1.339142e-02	ci left: 9.719630e-02	ci right 9.850791e-02	k: 77302	n:790000
KS ci ratio: 2.194334e-01	ci left: 3.595080e-04	ci right 4.492849e-04	k: 318	n:790000
TRIM28   790000 perm   409 sec   (1931 perm/sec)   p_kst 4.025316e-04   p_cons 9.785063e-02   p_joint 1.518987e-05

Joint ci ratio: 1.087203e+00	ci left: 7.750742e-06	ci right 2.620183e-05	k: 12	n:800000
Cons ci ratio: 1.330449e-02	ci left: 9.723965e-02	ci right 9.854326e-02	k: 78312	n:800000
KS ci ratio: 2.184090e-01	ci left: 3.585585e-04	ci right 4.476242e-04	k: 321	n:800000
TRIM28   800000 perm   417 sec   (1916 perm/sec)   p_kst 4.012500e-04   p_cons 9.789000e-02   p_joint 1.500000e-05

Joint ci ratio: 1.047654e+00	ci left: 8.545647e-06	ci right 2.744478e-05	k: 13	n:810000
Cons ci ratio: 1.322137e-02	ci left: 9.725364e-02	ci right 9.854923e-02	k: 79299	n:810000
KS ci ratio: 2.154185e-01	ci left: 3.646395e-04	ci right 4.538116e-04	k: 330	n:810000
TRIM28   810000 perm   426 sec   (1901 perm/sec)   p_kst 4.074074e-04   p_cons 9.790000e-02   p_joint 1.604938e-05

Joint ci ratio: 1.047654e+00	ci left: 8.441432e-06	ci right 2.711009e-05	k: 13	n:820000
Cons ci ratio: 1.314250e-02	ci left: 9.723084e-02	ci right 9.851834e-02	k: 80256	n:820000
KS ci ratio: 2.150943e-01	ci left: 3.613464e-04	ci right 4.495626e-04	k: 331	n:820000
TRIM28   820000 perm   435 sec   (1885 perm/sec)   p_kst 4.036585e-04   p_cons 9.787317e-02   p_joint 1.585366e-05

Joint ci ratio: 7.687627e-01	ci left: 1.949248e-05	ci right 4.446345e-05	k: 25	n:830000
Cons ci ratio: 1.306494e-02	ci left: 9.720981e-02	ci right 9.848938e-02	k: 81214	n:830000
KS ci ratio: 2.128616e-01	ci left: 3.649747e-04	ci right 4.530310e-04	k: 338	n:830000
TRIM28   830000 perm   444 sec   (1871 perm/sec)   p_kst 4.072289e-04   p_cons 9.784819e-02   p_joint 3.012048e-05

Joint ci ratio: 7.687629e-01	ci left: 1.926043e-05	ci right 4.393413e-05	k: 25	n:840000
Cons ci ratio: 1.298575e-02	ci left: 9.722966e-02	ci right 9.850168e-02	k: 82206	n:840000
KS ci ratio: 2.125487e-01	ci left: 3.617568e-04	ci right 4.488917e-04	k: 339	n:840000
TRIM28   840000 perm   452 sec   (1858 perm/sec)   p_kst 4.035714e-04   p_cons 9.786429e-02   p_joint 2.976190e-05

Joint ci ratio: 7.687630e-01	ci left: 1.903383e-05	ci right 4.341726e-05	k: 25	n:850000
Cons ci ratio: 1.290756e-02	ci left: 9.725494e-02	ci right 9.851957e-02	k: 83203	n:850000
KS ci ratio: 2.119266e-01	ci left: 3.597287e-04	ci right 4.460885e-04	k: 341	n:850000
TRIM28   850000 perm   461 sec   (1844 perm/sec)   p_kst 4.011765e-04   p_cons 9.788588e-02   p_joint 2.941176e-05

Joint ci ratio: 7.687632e-01	ci left: 1.881251e-05	ci right 4.291241e-05	k: 25	n:860000
Cons ci ratio: 1.283119e-02	ci left: 9.727385e-02	ci right 9.853119e-02	k: 84195	n:860000
KS ci ratio: 2.100914e-01	ci left: 3.621539e-04	ci right 4.482462e-04	k: 347	n:860000
TRIM28   860000 perm   470 sec   (1832 perm/sec)   p_kst 4.034884e-04   p_cons 9.790116e-02   p_joint 2.906977e-05

Joint ci ratio: 1.012130e+00	ci left: 8.797648e-06	ci right 2.699942e-05	k: 14	n:870000
Cons ci ratio: 1.275873e-02	ci left: 9.725682e-02	ci right 9.850678e-02	k: 85156	n:870000
KS ci ratio: 2.085981e-01	ci left: 3.634371e-04	ci right 4.491419e-04	k: 352	n:870000
TRIM28   870000 perm   478 sec   (1819 perm/sec)   p_kst 4.045977e-04   p_cons 9.788046e-02   p_joint 1.609195e-05

Joint ci ratio: 1.012130e+00	ci left: 8.697674e-06	ci right 2.669261e-05	k: 14	n:880000
Cons ci ratio: 1.269043e-02	ci left: 9.719940e-02	ci right 9.844189e-02	k: 86081	n:880000
KS ci ratio: 2.080099e-01	ci left: 3.614613e-04	ci right 4.464292e-04	k: 354	n:880000
TRIM28   880000 perm   488 sec   (1805 perm/sec)   p_kst 4.022727e-04   p_cons 9.781932e-02   p_joint 1.590909e-05

Joint ci ratio: 7.407983e-01	ci left: 1.999242e-05	ci right 4.413855e-05	k: 27	n:890000
Cons ci ratio: 1.262192e-02	ci left: 9.716121e-02	ci right 9.839646e-02	k: 87022	n:890000
KS ci ratio: 2.065602e-01	ci left: 3.627263e-04	ci right 4.473223e-04	k: 359	n:890000
TRIM28   890000 perm   497 sec   (1792 perm/sec)   p_kst 4.033708e-04   p_cons 9.777753e-02   p_joint 3.033708e-05

Joint ci ratio: 7.407984e-01	ci left: 1.977028e-05	ci right 4.364813e-05	k: 27	n:900000
Cons ci ratio: 1.255048e-02	ci left: 9.718040e-02	ci right 9.840885e-02	k: 88014	n:900000
KS ci ratio: 2.057050e-01	ci left: 3.618573e-04	ci right 4.458572e-04	k: 362	n:900000
TRIM28   900000 perm   506 sec   (1779 perm/sec)   p_kst 4.022222e-04   p_cons 9.779333e-02   p_joint 3.000000e-05

Joint ci ratio: 7.279137e-01	ci left: 2.044602e-05	ci right 4.446980e-05	k: 28	n:910000
Cons ci ratio: 1.248039e-02	ci left: 9.719700e-02	ci right 9.841875e-02	k: 89004	n:910000
KS ci ratio: 2.048604e-01	ci left: 3.610080e-04	ci right 4.444237e-04	k: 365	n:910000
TRIM28   910000 perm   515 sec   (1766 perm/sec)   p_kst 4.010989e-04   p_cons 9.780659e-02   p_joint 3.076923e-05

Joint ci ratio: 7.279139e-01	ci left: 2.022378e-05	ci right 4.398644e-05	k: 28	n:920000
Cons ci ratio: 1.241346e-02	ci left: 9.718507e-02	ci right 9.840007e-02	k: 89968	n:920000
KS ci ratio: 2.043031e-01	ci left: 3.591465e-04	ci right 4.418782e-04	k: 367	n:920000
TRIM28   920000 perm   525 sec   (1753 perm/sec)   p_kst 3.989130e-04   p_cons 9.779130e-02   p_joint 3.043478e-05

Joint ci ratio: 7.279140e-01	ci left: 2.000632e-05	ci right 4.351347e-05	k: 28	n:930000
Cons ci ratio: 1.234706e-02	ci left: 9.718092e-02	ci right 9.838933e-02	k: 90939	n:930000
KS ci ratio: 2.040265e-01	ci left: 3.563050e-04	ci right 4.382570e-04	k: 368	n:930000
TRIM28   930000 perm   534 sec   (1741 perm/sec)   p_kst 3.956989e-04   p_cons 9.778387e-02   p_joint 3.010753e-05

Joint ci ratio: 7.279141e-01	ci left: 1.979349e-05	ci right 4.305056e-05	k: 28	n:940000
Cons ci ratio: 1.228156e-02	ci left: 9.717900e-02	ci right 9.838093e-02	k: 91912	n:940000
KS ci ratio: 2.037509e-01	ci left: 3.535240e-04	ci right 4.347128e-04	k: 369	n:940000
TRIM28   940000 perm   545 sec   (1726 perm/sec)   p_kst 3.925532e-04   p_cons 9.777872e-02   p_joint 2.978723e-05

Joint ci ratio: 7.156791e-01	ci left: 2.044405e-05	ci right 4.384059e-05	k: 29	n:950000
Cons ci ratio: 1.221514e-02	ci left: 9.720548e-02	ci right 9.840118e-02	k: 92912	n:950000
KS ci ratio: 2.032026e-01	ci left: 3.518006e-04	ci right 4.323494e-04	k: 371	n:950000
TRIM28   950000 perm   554 sec   (1715 perm/sec)   p_kst 3.905263e-04   p_cons 9.780211e-02   p_joint 3.052632e-05

Joint ci ratio: 9.507307e-01	ci left: 9.526469e-06	ci right 2.706548e-05	k: 16	n:960000
Cons ci ratio: 1.214941e-02	ci left: 9.723662e-02	ci right 9.842623e-02	k: 93917	n:960000
KS ci ratio: 2.023883e-01	ci left: 3.511024e-04	ci right 4.311292e-04	k: 374	n:960000
TRIM28   960000 perm   564 sec   (1703 perm/sec)   p_kst 3.895833e-04   p_cons 9.783021e-02   p_joint 1.666667e-05

Joint ci ratio: 9.507308e-01	ci left: 9.428258e-06	ci right 2.678646e-05	k: 16	n:970000
Cons ci ratio: 1.208870e-02	ci left: 9.720956e-02	ci right 9.839285e-02	k: 94866	n:970000
KS ci ratio: 2.023887e-01	ci left: 3.474827e-04	ci right 4.266847e-04	k: 374	n:970000
TRIM28   970000 perm   573 sec   (1692 perm/sec)   p_kst 3.855670e-04   p_cons 9.780000e-02   p_joint 1.649485e-05

Joint ci ratio: 9.239439e-01	ci left: 1.010526e-05	ci right 2.777398e-05	k: 17	n:980000
Cons ci ratio: 1.202784e-02	ci left: 9.719833e-02	ci right 9.837548e-02	k: 95830	n:980000
KS ci ratio: 2.013178e-01	ci left: 3.478123e-04	ci right 4.266184e-04	k: 378	n:980000
TRIM28   980000 perm   583 sec   (1681 perm/sec)   p_kst 3.857143e-04   p_cons 9.778571e-02   p_joint 1.734694e-05

Joint ci ratio: 9.239440e-01	ci left: 1.000319e-05	ci right 2.749344e-05	k: 17	n:990000
Cons ci ratio: 1.196871e-02	ci left: 9.717525e-02	ci right 9.834630e-02	k: 96782	n:990000
KS ci ratio: 2.002638e-01	ci left: 3.481363e-04	ci right 4.265524e-04	k: 382	n:990000
TRIM28   990000 perm   593 sec   (1670 perm/sec)   p_kst 3.858586e-04   p_cons 9.775960e-02   p_joint 1.717172e-05

Joint ci ratio: 9.239441e-01	ci left: 9.903157e-06	ci right 2.721851e-05	k: 17	n:1000000
Cons ci ratio: 1.191065e-02	ci left: 9.714965e-02	ci right 9.831468e-02	k: 97731	n:1000000
KS ci ratio: 1.997431e-01	ci left: 3.465548e-04	ci right 4.243869e-04	k: 384	n:1000000
TRIM28   1000000 perm   603 sec   (1659 perm/sec)   p_kst 3.840000e-04   p_cons 9.773100e-02   p_joint 1.700000e-05

Joint ci ratio: 8.993008e-01	ci left: 1.056235e-05	ci right 2.816595e-05	k: 18	n:1010000
Cons ci ratio: 1.185229e-02	ci left: 9.714137e-02	ci right 9.830055e-02	k: 98697	n:1010000
KS ci ratio: 1.982044e-01	ci left: 3.487682e-04	ci right 4.264212e-04	k: 390	n:1010000
TRIM28   1010000 perm   613 sec   (1648 perm/sec)   p_kst 3.861386e-04   p_cons 9.771980e-02   p_joint 1.782178e-05

Joint ci ratio: 8.993009e-01	ci left: 1.045880e-05	ci right 2.788982e-05	k: 18	n:1020000
Cons ci ratio: 1.179419e-02	ci left: 9.714206e-02	ci right 9.829552e-02	k: 99672	n:1020000
KS ci ratio: 1.976996e-01	ci left: 3.472125e-04	ci right 4.242985e-04	k: 392	n:1020000
TRIM28   1020000 perm   623 sec   (1638 perm/sec)   p_kst 3.843137e-04   p_cons 9.771765e-02   p_joint 1.764706e-05

Joint ci ratio: 8.993009e-01	ci left: 1.035726e-05	ci right 2.761904e-05	k: 18	n:1030000
Cons ci ratio: 1.173771e-02	ci left: 9.713113e-02	ci right 9.827890e-02	k: 100635	n:1030000
KS ci ratio: 1.969494e-01	ci left: 3.466102e-04	ci right 4.232354e-04	k: 395	n:1030000
TRIM28   1030000 perm   633 sec   (1628 perm/sec)   p_kst 3.834951e-04   p_cons 9.770388e-02   p_joint 1.747573e-05

Joint ci ratio: 8.993010e-01	ci left: 1.025767e-05	ci right 2.735348e-05	k: 18	n:1040000
Cons ci ratio: 1.167873e-02	ci left: 9.717029e-02	ci right 9.831272e-02	k: 101650	n:1040000
KS ci ratio: 1.964541e-01	ci left: 3.451058e-04	ci right 4.211835e-04	k: 397	n:1040000
TRIM28   1040000 perm   643 sec   (1617 perm/sec)   p_kst 3.817308e-04   p_cons 9.774038e-02   p_joint 1.730769e-05

Joint ci ratio: 8.993011e-01	ci left: 1.015997e-05	ci right 2.709297e-05	k: 18	n:1050000
Cons ci ratio: 1.162113e-02	ci left: 9.720112e-02	ci right 9.833824e-02	k: 102657	n:1050000
KS ci ratio: 1.959626e-01	ci left: 3.436302e-04	ci right 4.191705e-04	k: 399	n:1050000
TRIM28   1050000 perm   654 sec   (1606 perm/sec)   p_kst 3.800000e-04   p_cons 9.776857e-02   p_joint 1.714286e-05

Joint ci ratio: 8.765300e-01	ci left: 1.079177e-05	ci right 2.799123e-05	k: 19	n:1060000
Cons ci ratio: 1.156666e-02	ci left: 9.719657e-02	ci right 9.832827e-02	k: 103627	n:1060000
KS ci ratio: 1.947491e-01	ci left: 3.448747e-04	ci right 4.201635e-04	k: 404	n:1060000
TRIM28   1060000 perm   664 sec   (1596 perm/sec)   p_kst 3.811321e-04   p_cons 9.776132e-02   p_joint 1.792453e-05

Joint ci ratio: 8.765300e-01	ci left: 1.069091e-05	ci right 2.772963e-05	k: 19	n:1070000
Cons ci ratio: 1.151258e-02	ci left: 9.719771e-02	ci right 9.832410e-02	k: 104603	n:1070000
KS ci ratio: 1.933221e-01	ci left: 3.469867e-04	ci right 4.221162e-04	k: 410	n:1070000
TRIM28   1070000 perm   675 sec   (1585 perm/sec)   p_kst 3.831776e-04   p_cons 9.775981e-02   p_joint 1.775701e-05

Joint ci ratio: 8.765301e-01	ci left: 1.059192e-05	ci right 2.747288e-05	k: 19	n:1080000
Cons ci ratio: 1.146064e-02	ci left: 9.717760e-02	ci right 9.829864e-02	k: 105556	n:1080000
KS ci ratio: 1.928536e-01	ci left: 3.455362e-04	ci right 4.201490e-04	k: 412	n:1080000
TRIM28   1080000 perm   686 sec   (1574 perm/sec)   p_kst 3.814815e-04   p_cons 9.773704e-02   p_joint 1.759259e-05

Joint ci ratio: 8.765302e-01	ci left: 1.049475e-05	ci right 2.722083e-05	k: 19	n:1090000
Cons ci ratio: 1.140975e-02	ci left: 9.715237e-02	ci right 9.826811e-02	k: 106503	n:1090000
KS ci ratio: 1.916966e-01	ci left: 3.467325e-04	ci right 4.211021e-04	k: 417	n:1090000
TRIM28   1090000 perm   697 sec   (1564 perm/sec)   p_kst 3.825688e-04   p_cons 9.770917e-02   p_joint 1.743119e-05

Joint ci ratio: 8.554056e-01	ci left: 1.110596e-05	ci right 2.808020e-05	k: 20	n:1100000
Cons ci ratio: 1.135742e-02	ci left: 9.716027e-02	ci right 9.827095e-02	k: 107486	n:1100000
KS ci ratio: 1.898878e-01	ci left: 3.505058e-04	ci right 4.248935e-04	k: 425	n:1100000
TRIM28   1100000 perm   707 sec   (1555 perm/sec)   p_kst 3.863636e-04   p_cons 9.771455e-02   p_joint 1.818182e-05

Joint ci ratio: 8.554057e-01	ci left: 1.100591e-05	ci right 2.782723e-05	k: 20	n:1110000
Cons ci ratio: 1.130575e-02	ci left: 9.716892e-02	ci right 9.827462e-02	k: 108470	n:1110000
KS ci ratio: 1.896655e-01	ci left: 3.482061e-04	ci right 4.220093e-04	k: 426	n:1110000
TRIM28   1110000 perm   718 sec   (1545 perm/sec)   p_kst 3.837838e-04   p_cons 9.772072e-02   p_joint 1.801802e-05

Joint ci ratio: 8.554057e-01	ci left: 1.090764e-05	ci right 2.757877e-05	k: 20	n:1120000
Cons ci ratio: 1.125489e-02	ci left: 9.717566e-02	ci right 9.827642e-02	k: 109452	n:1120000
KS ci ratio: 1.890028e-01	ci left: 3.476488e-04	ci right 4.210468e-04	k: 429	n:1120000
TRIM28   1120000 perm   729 sec   (1536 perm/sec)   p_kst 3.830357e-04   p_cons 9.772500e-02   p_joint 1.785714e-05

Joint ci ratio: 8.554058e-01	ci left: 1.081111e-05	ci right 2.733472e-05	k: 20	n:1130000
Cons ci ratio: 1.120854e-02	ci left: 9.712226e-02	ci right 9.821786e-02	k: 110366	n:1130000
KS ci ratio: 1.883470e-01	ci left: 3.471017e-04	ci right 4.201009e-04	k: 432	n:1130000
TRIM28   1130000 perm   740 sec   (1528 perm/sec)   p_kst 3.823009e-04   p_cons 9.766903e-02   p_joint 1.769912e-05

Joint ci ratio: 8.554059e-01	ci left: 1.071628e-05	ci right 2.709494e-05	k: 20	n:1140000
Cons ci ratio: 1.115914e-02	ci left: 9.712668e-02	ci right 9.821747e-02	k: 111345	n:1140000
KS ci ratio: 1.874830e-01	ci left: 3.474007e-04	ci right 4.200894e-04	k: 436	n:1140000
TRIM28   1140000 perm   751 sec   (1517 perm/sec)   p_kst 3.824561e-04   p_cons 9.767105e-02   p_joint 1.754386e-05

Joint ci ratio: 8.554059e-01	ci left: 1.062309e-05	ci right 2.685933e-05	k: 20	n:1150000
Cons ci ratio: 1.110930e-02	ci left: 9.714838e-02	ci right 9.823451e-02	k: 112344	n:1150000
KS ci ratio: 1.868428e-01	ci left: 3.468662e-04	ci right 4.191672e-04	k: 439	n:1150000
TRIM28   1150000 perm   763 sec   (1508 perm/sec)   p_kst 3.817391e-04   p_cons 9.769043e-02   p_joint 1.739130e-05

Joint ci ratio: 8.554060e-01	ci left: 1.053151e-05	ci right 2.662779e-05	k: 20	n:1160000
Cons ci ratio: 1.106488e-02	ci left: 9.709405e-02	ci right 9.817520e-02	k: 113255	n:1160000
KS ci ratio: 1.862092e-01	ci left: 3.463415e-04	ci right 4.182606e-04	k: 442	n:1160000
TRIM28   1160000 perm   776 sec   (1496 perm/sec)   p_kst 3.810345e-04   p_cons 9.763362e-02   p_joint 1.724138e-05

Joint ci ratio: 8.554061e-01	ci left: 1.044150e-05	ci right 2.640020e-05	k: 20	n:1170000
Cons ci ratio: 1.101745e-02	ci left: 9.709692e-02	ci right 9.817344e-02	k: 114232	n:1170000
KS ci ratio: 1.853741e-01	ci left: 3.466411e-04	ci right 4.182633e-04	k: 446	n:1170000
TRIM28   1170000 perm   787 sec   (1486 perm/sec)   p_kst 3.811966e-04   p_cons 9.763419e-02   p_joint 1.709402e-05

Joint ci ratio: 8.554062e-01	ci left: 1.035301e-05	ci right 2.617647e-05	k: 20	n:1180000
Cons ci ratio: 1.097069e-02	ci left: 9.709891e-02	ci right 9.817086e-02	k: 115208	n:1180000
KS ci ratio: 1.853744e-01	ci left: 3.437034e-04	ci right 4.147188e-04	k: 446	n:1180000
TRIM28   1180000 perm   799 sec   (1477 perm/sec)   p_kst 3.779661e-04   p_cons 9.763390e-02   p_joint 1.694915e-05

Joint ci ratio: 8.554062e-01	ci left: 1.026601e-05	ci right 2.595650e-05	k: 20	n:1190000
Cons ci ratio: 1.092451e-02	ci left: 9.710088e-02	ci right 9.816831e-02	k: 116184	n:1190000
KS ci ratio: 1.841425e-01	ci left: 3.456240e-04	ci right 4.165087e-04	k: 452	n:1190000
TRIM28   1190000 perm   810 sec   (1469 perm/sec)   p_kst 3.798319e-04   p_cons 9.763361e-02   p_joint 1.680672e-05

Joint ci ratio: 8.554063e-01	ci left: 1.018046e-05	ci right 2.574020e-05	k: 20	n:1200000
Cons ci ratio: 1.088015e-02	ci left: 9.708287e-02	ci right 9.814574e-02	k: 117136	n:1200000
KS ci ratio: 1.833349e-01	ci left: 3.459238e-04	ci right 4.165242e-04	k: 456	n:1200000
TRIM28   1200000 perm   823 sec   (1458 perm/sec)   p_kst 3.800000e-04   p_cons 9.761333e-02   p_joint 1.666667e-05

Joint ci ratio: 8.357389e-01	ci left: 1.074328e-05	ci right 2.652941e-05	k: 21	n:1210000
Cons ci ratio: 1.083612e-02	ci left: 9.706847e-02	ci right 9.812685e-02	k: 118092	n:1210000
KS ci ratio: 1.821429e-01	ci left: 3.477968e-04	ci right 4.182671e-04	k: 462	n:1210000
TRIM28   1210000 perm   834 sec   (1450 perm/sec)   p_kst 3.818182e-04   p_cons 9.759669e-02   p_joint 1.735537e-05

Joint ci ratio: 8.357389e-01	ci left: 1.065522e-05	ci right 2.631195e-05	k: 21	n:1220000
Cons ci ratio: 1.079047e-02	ci left: 9.708947e-02	ci right 9.814359e-02	k: 119091	n:1220000
KS ci ratio: 1.815557e-01	ci left: 3.472931e-04	ci right 4.174095e-04	k: 465	n:1220000
TRIM28   1220000 perm   847 sec   (1441 perm/sec)   p_kst 3.811475e-04   p_cons 9.761557e-02   p_joint 1.721311e-05

Joint ci ratio: 8.357390e-01	ci left: 1.056859e-05	ci right 2.609804e-05	k: 21	n:1230000
Cons ci ratio: 1.074667e-02	ci left: 9.708905e-02	ci right 9.813886e-02	k: 120064	n:1230000
KS ci ratio: 1.807815e-01	ci left: 3.475741e-04	ci right 4.174153e-04	k: 469	n:1230000
TRIM28   1230000 perm   859 sec   (1432 perm/sec)   p_kst 3.813008e-04   p_cons 9.761301e-02   p_joint 1.707317e-05

Joint ci ratio: 8.357391e-01	ci left: 1.048336e-05	ci right 2.588757e-05	k: 21	n:1240000
Cons ci ratio: 1.070463e-02	ci left: 9.706853e-02	ci right 9.811399e-02	k: 121012	n:1240000
KS ci ratio: 1.802073e-01	ci left: 3.470812e-04	ci right 4.165776e-04	k: 472	n:1240000
TRIM28   1240000 perm   871 sec   (1424 perm/sec)   p_kst 3.806452e-04   p_cons 9.759032e-02   p_joint 1.693548e-05

Joint ci ratio: 6.823751e-01	ci left: 1.751044e-05	ci right 3.613937e-05	k: 32	n:1250000
Cons ci ratio: 1.066080e-02	ci left: 9.708586e-02	ci right 9.812720e-02	k: 122007	n:1250000
KS ci ratio: 1.792623e-01	ci left: 3.481246e-04	ci right 4.174247e-04	k: 477	n:1250000
TRIM28   1250000 perm   884 sec   (1415 perm/sec)   p_kst 3.816000e-04   p_cons 9.760560e-02   p_joint 2.560000e-05

Joint ci ratio: 6.823752e-01	ci left: 1.737147e-05	ci right 3.585255e-05	k: 32	n:1260000
Cons ci ratio: 1.061851e-02	ci left: 9.708630e-02	ci right 9.812349e-02	k: 122981	n:1260000
KS ci ratio: 1.779637e-01	ci left: 3.506689e-04	ci right 4.199154e-04	k: 484	n:1260000
TRIM28   1260000 perm   898 sec   (1403 perm/sec)   p_kst 3.841270e-04   p_cons 9.760397e-02   p_joint 2.539683e-05

Joint ci ratio: 6.823753e-01	ci left: 1.723469e-05	ci right 3.557025e-05	k: 32	n:1270000
Cons ci ratio: 1.057591e-02	ci left: 9.710009e-02	ci right 9.813324e-02	k: 123972	n:1270000
KS ci ratio: 1.766929e-01	ci left: 3.531750e-04	ci right 4.223652e-04	k: 491	n:1270000
TRIM28   1270000 perm   910 sec   (1396 perm/sec)   p_kst 3.866142e-04   p_cons 9.761575e-02   p_joint 2.519685e-05

Joint ci ratio: 6.823753e-01	ci left: 1.710004e-05	ci right 3.529236e-05	k: 32	n:1280000
Cons ci ratio: 1.053509e-02	ci left: 9.709263e-02	ci right 9.812169e-02	k: 124936	n:1280000
KS ci ratio: 1.765138e-01	ci left: 3.511625e-04	ci right 4.198812e-04	k: 492	n:1280000
TRIM28   1280000 perm   922 sec   (1389 perm/sec)   p_kst 3.843750e-04   p_cons 9.760625e-02   p_joint 2.500000e-05

Joint ci ratio: 6.722653e-01	ci left: 1.760912e-05	ci right 3.592560e-05	k: 33	n:1290000
Cons ci ratio: 1.049404e-02	ci left: 9.709690e-02	ci right 9.812197e-02	k: 125915	n:1290000
KS ci ratio: 1.749240e-01	ci left: 3.551102e-04	ci right 4.239095e-04	k: 501	n:1290000
TRIM28   1290000 perm   934 sec   (1381 perm/sec)   p_kst 3.883721e-04   p_cons 9.760853e-02   p_joint 2.558140e-05

Joint ci ratio: 6.722654e-01	ci left: 1.747366e-05	ci right 3.564925e-05	k: 33	n:1300000
Cons ci ratio: 1.045237e-02	ci left: 9.711952e-02	ci right 9.814073e-02	k: 126918	n:1300000
KS ci ratio: 1.738878e-01	ci left: 3.567926e-04	ci right 4.254653e-04	k: 507	n:1300000
TRIM28   1300000 perm   946 sec   (1374 perm/sec)   p_kst 3.900000e-04   p_cons 9.762923e-02   p_joint 2.538462e-05

Joint ci ratio: 6.722655e-01	ci left: 1.734028e-05	ci right 3.537712e-05	k: 33	n:1310000
Cons ci ratio: 1.041179e-02	ci left: 9.713191e-02	ci right 9.814926e-02	k: 127908	n:1310000
KS ci ratio: 1.735467e-01	ci left: 3.555293e-04	ci right 4.238106e-04	k: 509	n:1310000
TRIM28   1310000 perm   958 sec   (1367 perm/sec)   p_kst 3.885496e-04   p_cons 9.763969e-02   p_joint 2.519084e-05

Joint ci ratio: 6.722655e-01	ci left: 1.720891e-05	ci right 3.510912e-05	k: 33	n:1320000
Cons ci ratio: 1.037175e-02	ci left: 9.714260e-02	ci right 9.815613e-02	k: 128896	n:1320000
KS ci ratio: 1.725346e-01	ci left: 3.571845e-04	ci right 4.253420e-04	k: 515	n:1320000
TRIM28   1320000 perm   970 sec   (1360 perm/sec)   p_kst 3.901515e-04   p_cons 9.764848e-02   p_joint 2.500000e-05

Joint ci ratio: 6.722656e-01	ci left: 1.707952e-05	ci right 3.484514e-05	k: 33	n:1330000
Cons ci ratio: 1.033620e-02	ci left: 9.708488e-02	ci right 9.809432e-02	k: 129793	n:1330000
KS ci ratio: 1.722013e-01	ci left: 3.559378e-04	ci right 4.237125e-04	k: 517	n:1330000
TRIM28   1330000 perm   983 sec   (1353 perm/sec)   p_kst 3.887218e-04   p_cons 9.758872e-02   p_joint 2.481203e-05

Joint ci ratio: 6.722657e-01	ci left: 1.695206e-05	ci right 3.458510e-05	k: 33	n:1340000
Cons ci ratio: 1.029847e-02	ci left: 9.707121e-02	ci right 9.807680e-02	k: 130748	n:1340000
KS ci ratio: 1.713761e-01	ci left: 3.568524e-04	ci right 4.244421e-04	k: 522	n:1340000
TRIM28   1340000 perm   996 sec   (1346 perm/sec)   p_kst 3.895522e-04   p_cons 9.757313e-02   p_joint 2.462687e-05

Joint ci ratio: 6.722657e-01	ci left: 1.682649e-05	ci right 3.432892e-05	k: 33	n:1350000
Cons ci ratio: 1.026279e-02	ci left: 9.702967e-02	ci right 9.803132e-02	k: 131665	n:1350000
KS ci ratio: 1.707245e-01	ci left: 3.570452e-04	ci right 4.243877e-04	k: 526	n:1350000
TRIM28   1350000 perm   1008 sec   (1339 perm/sec)   p_kst 3.896296e-04   p_cons 9.752963e-02   p_joint 2.444444e-05

Joint ci ratio: 6.722658e-01	ci left: 1.670276e-05	ci right 3.407650e-05	k: 33	n:1360000
Cons ci ratio: 1.022483e-02	ci left: 9.703422e-02	ci right 9.803220e-02	k: 132644	n:1360000
KS ci ratio: 1.702407e-01	ci left: 3.565316e-04	ci right 4.235672e-04	k: 529	n:1360000
TRIM28   1360000 perm   1021 sec   (1332 perm/sec)   p_kst 3.889706e-04   p_cons 9.753235e-02   p_joint 2.426471e-05

Joint ci ratio: 6.722659e-01	ci left: 1.658085e-05	ci right 3.382777e-05	k: 33	n:1370000
Cons ci ratio: 1.018767e-02	ci left: 9.703217e-02	ci right 9.802647e-02	k: 133614	n:1370000
KS ci ratio: 1.696019e-01	ci left: 3.567248e-04	ci right 4.235192e-04	k: 533	n:1370000
TRIM28   1370000 perm   1034 sec   (1325 perm/sec)   p_kst 3.890511e-04   p_cons 9.752847e-02   p_joint 2.408759e-05

Joint ci ratio: 6.722659e-01	ci left: 1.646069e-05	ci right 3.358264e-05	k: 33	n:1380000
Cons ci ratio: 1.015171e-02	ci left: 9.701641e-02	ci right 9.800702e-02	k: 134565	n:1380000
KS ci ratio: 1.691275e-01	ci left: 3.562215e-04	ci right 4.227162e-04	k: 536	n:1380000
TRIM28   1380000 perm   1047 sec   (1319 perm/sec)   p_kst 3.884058e-04   p_cons 9.751087e-02   p_joint 2.391304e-05

Joint ci ratio: 6.722660e-01	ci left: 1.634227e-05	ci right 3.334104e-05	k: 33	n:1390000
Cons ci ratio: 1.011414e-02	ci left: 9.703534e-02	ci right 9.802246e-02	k: 135564	n:1390000
KS ci ratio: 1.681904e-01	ci left: 3.577932e-04	ci right 4.241736e-04	k: 542	n:1390000
TRIM28   1390000 perm   1059 sec   (1312 perm/sec)   p_kst 3.899281e-04   p_cons 9.752806e-02   p_joint 2.374101e-05

Joint ci ratio: 6.722661e-01	ci left: 1.622554e-05	ci right 3.310289e-05	k: 33	n:1400000
Cons ci ratio: 1.007755e-02	ci left: 9.704403e-02	ci right 9.802764e-02	k: 136549	n:1400000
KS ci ratio: 1.677277e-01	ci left: 3.572903e-04	ci right 4.233767e-04	k: 545	n:1400000
TRIM28   1400000 perm   1072 sec   (1306 perm/sec)   p_kst 3.892857e-04   p_cons 9.753500e-02   p_joint 2.357143e-05

Joint ci ratio: 6.722661e-01	ci left: 1.611047e-05	ci right 3.286812e-05	k: 33	n:1410000
Cons ci ratio: 1.004209e-02	ci left: 9.703986e-02	ci right 9.801995e-02	k: 137516	n:1410000
KS ci ratio: 1.671167e-01	ci left: 3.574743e-04	ci right 4.233296e-04	k: 549	n:1410000
TRIM28   1410000 perm   1085 sec   (1300 perm/sec)   p_kst 3.893617e-04   p_cons 9.752908e-02   p_joint 2.340426e-05

Joint ci ratio: 6.722662e-01	ci left: 1.599701e-05	ci right 3.263666e-05	k: 33	n:1420000
Cons ci ratio: 1.000564e-02	ci left: 9.705965e-02	ci right 9.803636e-02	k: 138517	n:1420000
KS ci ratio: 1.660631e-01	ci left: 3.596810e-04	ci right 4.254833e-04	k: 556	n:1420000
TRIM28   1420000 perm   1097 sec   (1294 perm/sec)   p_kst 3.915493e-04   p_cons 9.754718e-02   p_joint 2.323944e-05

Joint ci ratio: 6.722662e-01	ci left: 1.588514e-05	ci right 3.240843e-05	k: 33	n:1430000
Cons ci ratio: 9.968357e-03	ci left: 9.710080e-02	ci right 9.807426e-02	k: 139549	n:1430000
KS ci ratio: 1.651757e-01	ci left: 3.611877e-04	ci right 4.268774e-04	k: 562	n:1430000
TRIM28   1430000 perm   1110 sec   (1288 perm/sec)   p_kst 3.930070e-04   p_cons 9.758671e-02   p_joint 2.307692e-05

Joint ci ratio: 6.722663e-01	ci left: 1.577483e-05	ci right 3.218337e-05	k: 33	n:1440000
Cons ci ratio: 9.934346e-03	ci left: 9.709080e-02	ci right 9.806082e-02	k: 140508	n:1440000
KS ci ratio: 1.645921e-01	ci left: 3.613426e-04	ci right 4.268053e-04	k: 566	n:1440000
TRIM28   1440000 perm   1123 sec   (1282 perm/sec)   p_kst 3.930556e-04   p_cons 9.757500e-02   p_joint 2.291667e-05

Joint ci ratio: 6.722663e-01	ci left: 1.566604e-05	ci right 3.196142e-05	k: 33	n:1450000
Cons ci ratio: 9.901106e-03	ci left: 9.707337e-02	ci right 9.803996e-02	k: 141456	n:1450000
KS ci ratio: 1.634428e-01	ci left: 3.641414e-04	ci right 4.296053e-04	k: 574	n:1450000
TRIM28   1450000 perm   1136 sec   (1276 perm/sec)   p_kst 3.958621e-04   p_cons 9.755586e-02   p_joint 2.275862e-05

Joint ci ratio: 6.625928e-01	ci left: 1.612744e-05	ci right 3.254204e-05	k: 34	n:1460000
Cons ci ratio: 9.869350e-03	ci left: 9.703569e-02	ci right 9.799878e-02	k: 142374	n:1460000
KS ci ratio: 1.625966e-01	ci left: 3.655892e-04	ci right 4.309398e-04	k: 580	n:1460000
TRIM28   1460000 perm   1150 sec   (1270 perm/sec)   p_kst 3.972603e-04   p_cons 9.751644e-02   p_joint 2.328767e-05

Joint ci ratio: 6.533251e-01	ci left: 1.658426e-05	ci right 3.311313e-05	k: 35	n:1470000
Cons ci ratio: 9.836947e-03	ci left: 9.701549e-02	ci right 9.797521e-02	k: 143317	n:1470000
KS ci ratio: 1.613514e-01	ci left: 3.689766e-04	ci right 4.343786e-04	k: 589	n:1470000
TRIM28   1470000 perm   1163 sec   (1264 perm/sec)   p_kst 4.006803e-04   p_cons 9.749456e-02   p_joint 2.380952e-05

Joint ci ratio: 6.533252e-01	ci left: 1.647220e-05	ci right 3.288939e-05	k: 35	n:1480000
Cons ci ratio: 9.804672e-03	ci left: 9.699895e-02	ci right 9.795533e-02	k: 144265	n:1480000
KS ci ratio: 1.610787e-01	ci left: 3.677803e-04	ci right 4.328495e-04	k: 591	n:1480000
TRIM28   1480000 perm   1177 sec   (1257 perm/sec)   p_kst 3.993243e-04   p_cons 9.747635e-02   p_joint 2.364865e-05

Joint ci ratio: 7.543973e-01	ci left: 1.139873e-05	ci right 2.556770e-05	k: 26	n:1490000
Cons ci ratio: 9.772713e-03	ci left: 9.698263e-02	ci right 9.793572e-02	k: 145213	n:1490000
KS ci ratio: 1.606722e-01	ci left: 3.672443e-04	ci right 4.320389e-04	k: 594	n:1490000
TRIM28   1490000 perm   1191 sec   (1251 perm/sec)   p_kst 3.986577e-04   p_cons 9.745839e-02   p_joint 1.744966e-05

Joint ci ratio: 7.543973e-01	ci left: 1.132274e-05	ci right 2.539725e-05	k: 26	n:1500000
Cons ci ratio: 9.739736e-03	ci left: 9.699048e-02	ci right 9.794041e-02	k: 146197	n:1500000
KS ci ratio: 1.597352e-01	ci left: 3.692756e-04	ci right 4.340122e-04	k: 601	n:1500000
TRIM28   1500000 perm   1204 sec   (1246 perm/sec)   p_kst 4.006667e-04   p_cons 9.746467e-02   p_joint 1.733333e-05

Joint ci ratio: 7.543974e-01	ci left: 1.124775e-05	ci right 2.522905e-05	k: 26	n:1510000
Cons ci ratio: 9.708369e-03	ci left: 9.697510e-02	ci right 9.792181e-02	k: 147146	n:1510000
KS ci ratio: 1.593387e-01	ci left: 3.687375e-04	ci right 4.332039e-04	k: 604	n:1510000
TRIM28   1510000 perm   1217 sec   (1241 perm/sec)   p_kst 4.000000e-04   p_cons 9.744768e-02   p_joint 1.721854e-05

Joint ci ratio: 7.543974e-01	ci left: 1.117376e-05	ci right 2.506307e-05	k: 26	n:1520000
Cons ci ratio: 9.677195e-03	ci left: 9.696190e-02	ci right 9.790542e-02	k: 148098	n:1520000
KS ci ratio: 1.592073e-01	ci left: 3.669433e-04	ci right 4.310380e-04	k: 605	n:1520000
TRIM28   1520000 perm   1230 sec   (1236 perm/sec)   p_kst 3.980263e-04   p_cons 9.743289e-02   p_joint 1.710526e-05

Joint ci ratio: 7.543974e-01	ci left: 1.110072e-05	ci right 2.489926e-05	k: 26	n:1530000
Cons ci ratio: 9.644348e-03	ci left: 9.698475e-02	ci right 9.792527e-02	k: 149105	n:1530000
KS ci ratio: 1.589454e-01	ci left: 3.658001e-04	ci right 4.295800e-04	k: 607	n:1530000
TRIM28   1530000 perm   1244 sec   (1230 perm/sec)   p_kst 3.967320e-04   p_cons 9.745425e-02   p_joint 1.699346e-05

Joint ci ratio: 7.543975e-01	ci left: 1.102864e-05	ci right 2.473758e-05	k: 26	n:1540000
Cons ci ratio: 9.613465e-03	ci left: 9.697750e-02	ci right 9.791492e-02	k: 150066	n:1540000
KS ci ratio: 1.588150e-01	ci left: 3.640483e-04	ci right 4.274657e-04	k: 608	n:1540000
TRIM28   1540000 perm   1258 sec   (1225 perm/sec)   p_kst 3.948052e-04   p_cons 9.744545e-02   p_joint 1.688312e-05

Joint ci ratio: 7.543975e-01	ci left: 1.095749e-05	ci right 2.457798e-05	k: 26	n:1550000
Cons ci ratio: 9.582349e-03	ci left: 9.698001e-02	ci right 9.791440e-02	k: 151042	n:1550000
KS ci ratio: 1.585549e-01	ci left: 3.629386e-04	ci right 4.260494e-04	k: 610	n:1550000
TRIM28   1550000 perm   1271 sec   (1219 perm/sec)   p_kst 3.935484e-04   p_cons 9.744645e-02   p_joint 1.677419e-05

Joint ci ratio: 7.543976e-01	ci left: 1.088725e-05	ci right 2.442043e-05	k: 26	n:1560000
Cons ci ratio: 9.550907e-03	ci left: 9.699400e-02	ci right 9.792545e-02	k: 152036	n:1560000
KS ci ratio: 1.582961e-01	ci left: 3.618433e-04	ci right 4.246512e-04	k: 612	n:1560000
TRIM28   1560000 perm   1285 sec   (1214 perm/sec)   p_kst 3.923077e-04   p_cons 9.745897e-02   p_joint 1.666667e-05

Joint ci ratio: 7.543976e-01	ci left: 1.081790e-05	ci right 2.426489e-05	k: 26	n:1570000
Cons ci ratio: 9.520394e-03	ci left: 9.699638e-02	ci right 9.792486e-02	k: 153012	n:1570000
KS ci ratio: 1.582963e-01	ci left: 3.595386e-04	ci right 4.219464e-04	k: 612	n:1570000
TRIM28   1570000 perm   1299 sec   (1208 perm/sec)   p_kst 3.898089e-04   p_cons 9.745987e-02   p_joint 1.656051e-05

Joint ci ratio: 7.543977e-01	ci left: 1.074943e-05	ci right 2.411132e-05	k: 26	n:1580000
Cons ci ratio: 9.489146e-03	ci left: 9.701768e-02	ci right 9.794329e-02	k: 154018	n:1580000
KS ci ratio: 1.577824e-01	ci left: 3.596945e-04	ci right 4.219076e-04	k: 616	n:1580000
TRIM28   1580000 perm   1313 sec   (1203 perm/sec)   p_kst 3.898734e-04   p_cons 9.747975e-02   p_joint 1.645570e-05

Joint ci ratio: 7.543977e-01	ci left: 1.068183e-05	ci right 2.395967e-05	k: 26	n:1590000
Cons ci ratio: 9.458948e-03	ci left: 9.702490e-02	ci right 9.794763e-02	k: 155002	n:1590000
KS ci ratio: 1.574002e-01	ci left: 3.592447e-04	ci right 4.212152e-04	k: 619	n:1590000
TRIM28   1590000 perm   1327 sec   (1198 perm/sec)   p_kst 3.893082e-04   p_cons 9.748553e-02   p_joint 1.635220e-05

Joint ci ratio: 7.543978e-01	ci left: 1.061507e-05	ci right 2.380993e-05	k: 26	n:1600000
Cons ci ratio: 9.429405e-03	ci left: 9.702519e-02	ci right 9.794502e-02	k: 155975	n:1600000
KS ci ratio: 1.568949e-01	ci left: 3.594011e-04	ci right 4.211808e-04	k: 623	n:1600000
TRIM28   1600000 perm   1342 sec   (1193 perm/sec)   p_kst 3.893750e-04   p_cons 9.748437e-02   p_joint 1.625000e-05

Joint ci ratio: 7.543978e-01	ci left: 1.054913e-05	ci right 2.366204e-05	k: 26	n:1610000
Cons ci ratio: 9.399009e-03	ci left: 9.704655e-02	ci right 9.796360e-02	k: 156982	n:1610000
KS ci ratio: 1.566442e-01	ci left: 3.583623e-04	ci right 4.198557e-04	k: 625	n:1610000
TRIM28   1610000 perm   1356 sec   (1187 perm/sec)   p_kst 3.881988e-04   p_cons 9.750435e-02   p_joint 1.614907e-05

Joint ci ratio: 7.408037e-01	ci left: 1.098347e-05	ci right 2.424903e-05	k: 27	n:1620000
Cons ci ratio: 9.370548e-03	ci left: 9.703685e-02	ci right 9.795101e-02	k: 157939	n:1620000
KS ci ratio: 1.558988e-01	ci left: 3.597090e-04	ci right 4.211124e-04	k: 631	n:1620000
TRIM28   1620000 perm   1372 sec   (1181 perm/sec)   p_kst 3.895062e-04   p_cons 9.749321e-02   p_joint 1.666667e-05

Joint ci ratio: 7.408038e-01	ci left: 1.091608e-05	ci right 2.410027e-05	k: 27	n:1630000
Cons ci ratio: 9.341106e-03	ci left: 9.705053e-02	ci right 9.796194e-02	k: 158934	n:1630000
KS ci ratio: 1.555301e-01	ci left: 3.592710e-04	ci right 4.204411e-04	k: 634	n:1630000
TRIM28   1630000 perm   1386 sec   (1176 perm/sec)   p_kst 3.889571e-04   p_cons 9.750552e-02   p_joint 1.656442e-05

Joint ci ratio: 7.408038e-01	ci left: 1.084952e-05	ci right 2.395331e-05	k: 27	n:1640000
Cons ci ratio: 9.312521e-03	ci left: 9.705310e-02	ci right 9.796173e-02	k: 159911	n:1640000
KS ci ratio: 1.551640e-01	ci left: 3.588385e-04	ci right 4.197777e-04	k: 637	n:1640000
TRIM28   1640000 perm   1402 sec   (1170 perm/sec)   p_kst 3.884146e-04   p_cons 9.750671e-02   p_joint 1.646341e-05

Joint ci ratio: 7.408039e-01	ci left: 1.078377e-05	ci right 2.380814e-05	k: 27	n:1650000
Cons ci ratio: 9.284293e-03	ci left: 9.705383e-02	ci right 9.795970e-02	k: 160885	n:1650000
KS ci ratio: 1.544394e-01	ci left: 3.601592e-04	ci right 4.210107e-04	k: 643	n:1650000
TRIM28   1650000 perm   1416 sec   (1165 perm/sec)   p_kst 3.896970e-04   p_cons 9.750606e-02   p_joint 1.636364e-05

Joint ci ratio: 7.408039e-01	ci left: 1.071880e-05	ci right 2.366472e-05	k: 27	n:1660000
Cons ci ratio: 9.255560e-03	ci left: 9.706899e-02	ci right 9.797218e-02	k: 161883	n:1660000
KS ci ratio: 1.542003e-01	ci left: 3.591479e-04	ci right 4.197258e-04	k: 645	n:1660000
TRIM28   1660000 perm   1431 sec   (1160 perm/sec)   p_kst 3.885542e-04   p_cons 9.751988e-02   p_joint 1.626506e-05

Joint ci ratio: 7.408039e-01	ci left: 1.065462e-05	ci right 2.352302e-05	k: 27	n:1670000
Cons ci ratio: 9.228441e-03	ci left: 9.705827e-02	ci right 9.795870e-02	k: 162838	n:1670000
KS ci ratio: 1.538435e-01	ci left: 3.587245e-04	ci right 4.190781e-04	k: 648	n:1670000
TRIM28   1670000 perm   1445 sec   (1156 perm/sec)   p_kst 3.880240e-04   p_cons 9.750778e-02   p_joint 1.616766e-05

Joint ci ratio: 7.408040e-01	ci left: 1.059120e-05	ci right 2.338300e-05	k: 27	n:1680000
Cons ci ratio: 9.201435e-03	ci left: 9.705006e-02	ci right 9.794776e-02	k: 163797	n:1680000
KS ci ratio: 1.537253e-01	ci left: 3.571615e-04	ci right 4.172018e-04	k: 649	n:1680000
TRIM28   1680000 perm   1460 sec   (1151 perm/sec)   p_kst 3.863095e-04   p_cons 9.749821e-02   p_joint 1.607143e-05

Joint ci ratio: 7.408040e-01	ci left: 1.052853e-05	ci right 2.324464e-05	k: 27	n:1690000
Cons ci ratio: 9.175189e-03	ci left: 9.703191e-02	ci right 9.792687e-02	k: 164739	n:1690000
KS ci ratio: 1.526717e-01	ci left: 3.601695e-04	ci right 4.202625e-04	k: 658	n:1690000
TRIM28   1690000 perm   1475 sec   (1146 perm/sec)   p_kst 3.893491e-04   p_cons 9.747870e-02   p_joint 1.597633e-05

Joint ci ratio: 7.279193e-01	ci left: 1.094461e-05	ci right 2.380450e-05	k: 28	n:1700000
Cons ci ratio: 9.148096e-03	ci left: 9.703452e-02	ci right 9.792685e-02	k: 165716	n:1700000
KS ci ratio: 1.522105e-01	ci left: 3.603140e-04	ci right 4.202330e-04	k: 662	n:1700000
TRIM28   1700000 perm   1490 sec   (1141 perm/sec)   p_kst 3.894118e-04   p_cons 9.748000e-02   p_joint 1.647059e-05

Joint ci ratio: 7.279193e-01	ci left: 1.088061e-05	ci right 2.366529e-05	k: 28	n:1710000
Cons ci ratio: 9.121908e-03	ci left: 9.702427e-02	ci right 9.791394e-02	k: 166671	n:1710000
KS ci ratio: 1.516397e-01	ci left: 3.610198e-04	ci right 4.208105e-04	k: 667	n:1710000
TRIM28   1710000 perm   1505 sec   (1136 perm/sec)   p_kst 3.900585e-04   p_cons 9.746842e-02   p_joint 1.637427e-05

Joint ci ratio: 7.279194e-01	ci left: 1.081735e-05	ci right 2.352770e-05	k: 28	n:1720000
Cons ci ratio: 9.093751e-03	ci left: 9.705649e-02	ci right 9.794370e-02	k: 167699	n:1720000
KS ci ratio: 1.510753e-01	ci left: 3.617177e-04	ci right 4.213809e-04	k: 672	n:1720000
TRIM28   1720000 perm   1520 sec   (1132 perm/sec)   p_kst 3.906977e-04   p_cons 9.749942e-02   p_joint 1.627907e-05

Joint ci ratio: 7.279194e-01	ci left: 1.075482e-05	ci right 2.339171e-05	k: 28	n:1730000
Cons ci ratio: 9.068383e-03	ci left: 9.703932e-02	ci right 9.792388e-02	k: 168642	n:1730000
KS ci ratio: 1.506283e-01	ci left: 3.618517e-04	ci right 4.213445e-04	k: 676	n:1730000
TRIM28   1730000 perm   1535 sec   (1127 perm/sec)   p_kst 3.907514e-04   p_cons 9.748092e-02   p_joint 1.618497e-05

Joint ci ratio: 7.156844e-01	ci left: 1.116196e-05	ci right 2.393603e-05	k: 29	n:1740000
Cons ci ratio: 9.043227e-03	ci left: 9.702234e-02	ci right 9.790428e-02	k: 169585	n:1740000
KS ci ratio: 1.502957e-01	ci left: 3.614313e-04	ci right 4.207120e-04	k: 679	n:1740000
TRIM28   1740000 perm   1551 sec   (1122 perm/sec)   p_kst 3.902299e-04   p_cons 9.746264e-02   p_joint 1.666667e-05

Joint ci ratio: 7.156845e-01	ci left: 1.109817e-05	ci right 2.379925e-05	k: 29	n:1750000
Cons ci ratio: 9.015233e-03	ci left: 9.706488e-02	ci right 9.794446e-02	k: 170632	n:1750000
KS ci ratio: 1.497461e-01	ci left: 3.621159e-04	ci right 4.212722e-04	k: 684	n:1750000
TRIM28   1750000 perm   1566 sec   (1118 perm/sec)   p_kst 3.908571e-04   p_cons 9.750400e-02   p_joint 1.657143e-05

Joint ci ratio: 7.156845e-01	ci left: 1.103512e-05	ci right 2.366403e-05	k: 29	n:1760000
Cons ci ratio: 8.988890e-03	ci left: 9.707971e-02	ci right 9.795684e-02	k: 171631	n:1760000
KS ci ratio: 1.493108e-01	ci left: 3.622461e-04	ci right 4.212364e-04	k: 688	n:1760000
TRIM28   1760000 perm   1581 sec   (1113 perm/sec)   p_kst 3.909091e-04   p_cons 9.751761e-02   p_joint 1.647727e-05

Joint ci ratio: 7.156845e-01	ci left: 1.097277e-05	ci right 2.353033e-05	k: 29	n:1770000
Cons ci ratio: 8.964733e-03	ci left: 9.705604e-02	ci right 9.793059e-02	k: 172562	n:1770000
KS ci ratio: 1.487719e-01	ci left: 3.629191e-04	ci right 4.217866e-04	k: 693	n:1770000
TRIM28   1770000 perm   1597 sec   (1108 perm/sec)   p_kst 3.915254e-04   p_cons 9.749266e-02   p_joint 1.638418e-05

Joint ci ratio: 7.156846e-01	ci left: 1.091112e-05	ci right 2.339814e-05	k: 29	n:1780000
Cons ci ratio: 8.941027e-03	ci left: 9.702759e-02	ci right 9.789956e-02	k: 173484	n:1780000
KS ci ratio: 1.484515e-01	ci left: 3.625029e-04	ci right 4.211650e-04	k: 696	n:1780000
TRIM28   1780000 perm   1613 sec   (1104 perm/sec)   p_kst 3.910112e-04   p_cons 9.746292e-02   p_joint 1.629213e-05

Joint ci ratio: 7.156846e-01	ci left: 1.085017e-05	ci right 2.326742e-05	k: 29	n:1790000
Cons ci ratio: 8.917564e-03	ci left: 9.699835e-02	ci right 9.786776e-02	k: 174404	n:1790000
KS ci ratio: 1.478165e-01	ci left: 3.637055e-04	ci right 4.222882e-04	k: 702	n:1790000
TRIM28   1790000 perm   1628 sec   (1099 perm/sec)   p_kst 3.921788e-04   p_cons 9.743240e-02   p_joint 1.620112e-05

Joint ci ratio: 7.156846e-01	ci left: 1.078989e-05	ci right 2.313816e-05	k: 29	n:1800000
Cons ci ratio: 8.893470e-03	ci left: 9.698552e-02	ci right 9.785245e-02	k: 175353	n:1800000
KS ci ratio: 1.473978e-01	ci left: 3.638251e-04	ci right 4.222464e-04	k: 706	n:1800000
TRIM28   1800000 perm   1644 sec   (1095 perm/sec)   p_kst 3.922222e-04   p_cons 9.741833e-02   p_joint 1.611111e-05

Joint ci ratio: 7.156847e-01	ci left: 1.073028e-05	ci right 2.301033e-05	k: 29	n:1810000
Cons ci ratio: 8.869013e-03	ci left: 9.698385e-02	ci right 9.784837e-02	k: 176322	n:1810000
KS ci ratio: 1.467762e-01	ci left: 3.650079e-04	ci right 4.233504e-04	k: 712	n:1810000
TRIM28   1810000 perm   1661 sec   (1090 perm/sec)   p_kst 3.933702e-04   p_cons 9.741547e-02   p_joint 1.602210e-05

Joint ci ratio: 7.156847e-01	ci left: 1.067132e-05	ci right 2.288390e-05	k: 29	n:1820000
Cons ci ratio: 8.845448e-03	ci left: 9.696851e-02	ci right 9.783058e-02	k: 177266	n:1820000
KS ci ratio: 1.462642e-01	ci left: 3.656489e-04	ci right 4.238722e-04	k: 717	n:1820000
TRIM28   1820000 perm   1677 sec   (1085 perm/sec)   p_kst 3.939560e-04   p_cons 9.739890e-02   p_joint 1.593407e-05

Joint ci ratio: 7.156847e-01	ci left: 1.061301e-05	ci right 2.275885e-05	k: 29	n:1830000
Cons ci ratio: 8.821164e-03	ci left: 9.697132e-02	ci right 9.783104e-02	k: 178243	n:1830000
KS ci ratio: 1.461626e-01	ci left: 3.641773e-04	ci right 4.221224e-04	k: 718	n:1830000
TRIM28   1830000 perm   1693 sec   (1081 perm/sec)   p_kst 3.923497e-04   p_cons 9.740055e-02   p_joint 1.584699e-05

Joint ci ratio: 7.156848e-01	ci left: 1.055533e-05	ci right 2.263516e-05	k: 29	n:1840000
Cons ci ratio: 8.797352e-03	ci left: 9.696869e-02	ci right 9.782605e-02	k: 179210	n:1840000
KS ci ratio: 1.458586e-01	ci left: 3.637689e-04	ci right 4.215182e-04	k: 721	n:1840000
TRIM28   1840000 perm   1710 sec   (1076 perm/sec)   p_kst 3.918478e-04   p_cons 9.739674e-02   p_joint 1.576087e-05

Joint ci ratio: 7.156848e-01	ci left: 1.049827e-05	ci right 2.251281e-05	k: 29	n:1850000
Cons ci ratio: 8.773758e-03	ci left: 9.696555e-02	ci right 9.782058e-02	k: 180176	n:1850000
KS ci ratio: 1.450570e-01	ci left: 3.659696e-04	ci right 4.237213e-04	k: 729	n:1850000
TRIM28   1850000 perm   1726 sec   (1072 perm/sec)   p_kst 3.940541e-04   p_cons 9.739243e-02   p_joint 1.567568e-05

Joint ci ratio: 7.156848e-01	ci left: 1.044183e-05	ci right 2.239177e-05	k: 29	n:1860000
Cons ci ratio: 8.750407e-03	ci left: 9.696137e-02	ci right 9.781407e-02	k: 181140	n:1860000
KS ci ratio: 1.446612e-01	ci left: 3.660746e-04	ci right 4.236716e-04	k: 733	n:1860000
TRIM28   1860000 perm   1742 sec   (1068 perm/sec)   p_kst 3.940860e-04   p_cons 9.738710e-02   p_joint 1.559140e-05

Joint ci ratio: 7.156849e-01	ci left: 1.038599e-05	ci right 2.227203e-05	k: 29	n:1870000
Cons ci ratio: 8.728276e-03	ci left: 9.693643e-02	ci right 9.778674e-02	k: 182065	n:1870000
KS ci ratio: 1.444646e-01	ci left: 3.651478e-04	ci right 4.225142e-04	k: 735	n:1870000
TRIM28   1870000 perm   1759 sec   (1063 perm/sec)   p_kst 3.930481e-04   p_cons 9.736096e-02   p_joint 1.550802e-05

Joint ci ratio: 7.156849e-01	ci left: 1.033074e-05	ci right 2.215356e-05	k: 29	n:1880000
Cons ci ratio: 8.705180e-03	ci left: 9.693458e-02	ci right 9.778262e-02	k: 183033	n:1880000
KS ci ratio: 1.442688e-01	ci left: 3.642309e-04	ci right 4.213690e-04	k: 737	n:1880000
TRIM28   1880000 perm   1776 sec   (1058 perm/sec)   p_kst 3.920213e-04   p_cons 9.735798e-02   p_joint 1.542553e-05

Joint ci ratio: 7.156849e-01	ci left: 1.027608e-05	ci right 2.203635e-05	k: 29	n:1890000
Cons ci ratio: 8.683207e-03	ci left: 9.691374e-02	ci right 9.775945e-02	k: 183965	n:1890000
KS ci ratio: 1.436858e-01	ci left: 3.653640e-04	ci right 4.224284e-04	k: 743	n:1890000
TRIM28   1890000 perm   1792 sec   (1054 perm/sec)   p_kst 3.931217e-04   p_cons 9.733598e-02   p_joint 1.534392e-05

Joint ci ratio: 7.040469e-01	ci left: 1.065312e-05	ci right 2.254038e-05	k: 30	n:1900000
Cons ci ratio: 8.659739e-03	ci left: 9.692675e-02	ci right 9.777027e-02	k: 184961	n:1900000
KS ci ratio: 1.433011e-01	ci left: 3.654707e-04	ci right 4.223859e-04	k: 747	n:1900000
TRIM28   1900000 perm   1809 sec   (1050 perm/sec)   p_kst 3.931579e-04   p_cons 9.734789e-02   p_joint 1.578947e-05

Joint ci ratio: 7.040469e-01	ci left: 1.059734e-05	ci right 2.242237e-05	k: 30	n:1910000
Cons ci ratio: 8.636512e-03	ci left: 9.693857e-02	ci right 9.777992e-02	k: 185955	n:1910000
KS ci ratio: 1.429195e-01	ci left: 3.655765e-04	ci right 4.223437e-04	k: 751	n:1910000
TRIM28   1910000 perm   1826 sec   (1046 perm/sec)   p_kst 3.931937e-04   p_cons 9.735864e-02   p_joint 1.570681e-05

Joint ci ratio: 7.040469e-01	ci left: 1.054215e-05	ci right 2.230558e-05	k: 30	n:1920000
Cons ci ratio: 8.614211e-03	ci left: 9.693521e-02	ci right 9.777434e-02	k: 186920	n:1920000
KS ci ratio: 1.426353e-01	ci left: 3.651792e-04	ci right 4.217622e-04	k: 754	n:1920000
TRIM28   1920000 perm   1843 sec   (1042 perm/sec)   p_kst 3.927083e-04   p_cons 9.735417e-02   p_joint 1.562500e-05

Joint ci ratio: 7.040469e-01	ci left: 1.048752e-05	ci right 2.219001e-05	k: 30	n:1930000
Cons ci ratio: 8.591246e-03	ci left: 9.694894e-02	ci right 9.778595e-02	k: 187918	n:1930000
KS ci ratio: 1.425411e-01	ci left: 3.637867e-04	ci right 4.201136e-04	k: 755	n:1930000
TRIM28   1930000 perm   1860 sec   (1038 perm/sec)   p_kst 3.911917e-04   p_cons 9.736684e-02   p_joint 1.554404e-05

Joint ci ratio: 7.040470e-01	ci left: 1.043346e-05	ci right 2.207563e-05	k: 30	n:1940000
Cons ci ratio: 8.568916e-03	ci left: 9.695327e-02	ci right 9.778813e-02	k: 188898	n:1940000
KS ci ratio: 1.424470e-01	ci left: 3.624086e-04	ci right 4.184819e-04	k: 756	n:1940000
TRIM28   1940000 perm   1877 sec   (1034 perm/sec)   p_kst 3.896907e-04   p_cons 9.737010e-02   p_joint 1.546392e-05

Joint ci ratio: 6.929588e-01	ci left: 1.080156e-05	ci right 2.256507e-05	k: 31	n:1950000
Cons ci ratio: 8.546809e-03	ci left: 9.695654e-02	ci right 9.778927e-02	k: 189876	n:1950000
KS ci ratio: 1.417928e-01	ci left: 3.640122e-04	ci right 4.200531e-04	k: 763	n:1950000
TRIM28   1950000 perm   1895 sec   (1029 perm/sec)   p_kst 3.912821e-04   p_cons 9.737231e-02   p_joint 1.589744e-05

Joint ci ratio: 6.823785e-01	ci left: 1.116736e-05	ci right 2.304811e-05	k: 32	n:1960000
Cons ci ratio: 8.524402e-03	ci left: 9.696946e-02	ci right 9.780010e-02	k: 190873	n:1960000
KS ci ratio: 1.417002e-01	ci left: 3.626471e-04	ci right 4.184383e-04	k: 764	n:1960000
TRIM28   1960000 perm   1911 sec   (1025 perm/sec)   p_kst 3.897959e-04   p_cons 9.738418e-02   p_joint 1.632653e-05

Joint ci ratio: 6.823785e-01	ci left: 1.111067e-05	ci right 2.293112e-05	k: 32	n:1970000
Cons ci ratio: 8.504455e-03	ci left: 9.693513e-02	ci right 9.776352e-02	k: 191777	n:1970000
KS ci ratio: 1.416078e-01	ci left: 3.612958e-04	ci right 4.168398e-04	k: 765	n:1970000
TRIM28   1970000 perm   1929 sec   (1021 perm/sec)   p_kst 3.883249e-04   p_cons 9.734873e-02   p_joint 1.624365e-05

Joint ci ratio: 6.823786e-01	ci left: 1.105456e-05	ci right 2.281530e-05	k: 32	n:1980000
Cons ci ratio: 8.483110e-03	ci left: 9.693290e-02	ci right 9.775919e-02	k: 192744	n:1980000
KS ci ratio: 1.411478e-01	ci left: 3.619070e-04	ci right 4.173491e-04	k: 770	n:1980000
TRIM28   1980000 perm   1946 sec   (1018 perm/sec)   p_kst 3.888889e-04   p_cons 9.734545e-02   p_joint 1.616162e-05

Joint ci ratio: 6.823786e-01	ci left: 1.099901e-05	ci right 2.270065e-05	k: 32	n:1990000
Cons ci ratio: 8.461562e-03	ci left: 9.693822e-02	ci right 9.776245e-02	k: 193726	n:1990000
KS ci ratio: 1.404210e-01	ci left: 3.639670e-04	ci right 4.194134e-04	k: 778	n:1990000
TRIM28   1990000 perm   1964 sec   (1013 perm/sec)   p_kst 3.909548e-04   p_cons 9.734975e-02   p_joint 1.608040e-05

Joint ci ratio: 6.823786e-01	ci left: 1.094401e-05	ci right 2.258715e-05	k: 32	n:2000000
Cons ci ratio: 8.439889e-03	ci left: 9.694949e-02	ci right 9.777168e-02	k: 194720	n:2000000
KS ci ratio: 1.402412e-01	ci left: 3.631120e-04	ci right 4.183515e-04	k: 780	n:2000000
TRIM28   2000000 perm   1981 sec   (1010 perm/sec)   p_kst 3.900000e-04   p_cons 9.736000e-02   p_joint 1.600000e-05

Joint ci ratio: 6.533273e-01	ci left: 1.212878e-05	ci right 2.421710e-05	k: 35	n:2010000
Cons ci ratio: 8.417906e-03	ci left: 9.697057e-02	ci right 9.779079e-02	k: 195734	n:2010000
KS ci ratio: 1.395283e-01	ci left: 3.651463e-04	ci right 4.203894e-04	k: 788	n:2010000
TRIM28   2010000 perm   1999 sec   (1006 perm/sec)   p_kst 3.920398e-04   p_cons 9.738010e-02   p_joint 1.741294e-05

Joint ci ratio: 6.444380e-01	ci left: 1.248219e-05	ci right 2.467277e-05	k: 36	n:2020000
Cons ci ratio: 8.396614e-03	ci left: 9.698058e-02	ci right 9.779880e-02	k: 196726	n:2020000
KS ci ratio: 1.390882e-01	ci left: 3.657276e-04	ci right 4.208697e-04	k: 793	n:2020000
TRIM28   2020000 perm   2016 sec   (1002 perm/sec)   p_kst 3.925743e-04   p_cons 9.738911e-02   p_joint 1.782178e-05

Joint ci ratio: 6.444380e-01	ci left: 1.242070e-05	ci right 2.455123e-05	k: 36	n:2030000
Cons ci ratio: 8.375670e-03	ci left: 9.698655e-02	ci right 9.780277e-02	k: 197710	n:2030000
KS ci ratio: 1.390008e-01	ci left: 3.644015e-04	ci right 4.193062e-04	k: 794	n:2030000
TRIM28   2030000 perm   2033 sec   (998 perm/sec)   p_kst 3.911330e-04   p_cons 9.739409e-02   p_joint 1.773399e-05

Joint ci ratio: 6.444380e-01	ci left: 1.235981e-05	ci right 2.443089e-05	k: 36	n:2040000
Cons ci ratio: 8.354136e-03	ci left: 9.700813e-02	ci right 9.782242e-02	k: 198726	n:2040000
KS ci ratio: 1.386524e-01	ci left: 3.645079e-04	ci right 4.192796e-04	k: 798	n:2040000
TRIM28   2040000 perm   2050 sec   (995 perm/sec)   p_kst 3.911765e-04   p_cons 9.741471e-02   p_joint 1.764706e-05

Joint ci ratio: 6.444381e-01	ci left: 1.229952e-05	ci right 2.431171e-05	k: 36	n:2050000
Cons ci ratio: 8.334594e-03	ci left: 9.699104e-02	ci right 9.780327e-02	k: 199663	n:2050000
KS ci ratio: 1.382206e-01	ci left: 3.650844e-04	ci right 4.197578e-04	k: 803	n:2050000
TRIM28   2050000 perm   2068 sec   (991 perm/sec)   p_kst 3.917073e-04   p_cons 9.739659e-02   p_joint 1.756098e-05

Joint ci ratio: 6.359020e-01	ci left: 1.264635e-05	ci right 2.475702e-05	k: 37	n:2060000
Cons ci ratio: 8.314225e-03	ci left: 9.699446e-02	ci right 9.780473e-02	k: 200642	n:2060000
KS ci ratio: 1.377076e-01	ci left: 3.661242e-04	ci right 4.207332e-04	k: 809	n:2060000
TRIM28   2060000 perm   2089 sec   (986 perm/sec)   p_kst 3.927184e-04   p_cons 9.739903e-02   p_joint 1.796117e-05

Joint ci ratio: 6.359020e-01	ci left: 1.258525e-05	ci right 2.463742e-05	k: 37	n:2070000
Cons ci ratio: 8.295098e-03	ci left: 9.697471e-02	ci right 9.778294e-02	k: 201573	n:2070000
KS ci ratio: 1.375380e-01	ci left: 3.652884e-04	ci right 4.197001e-04	k: 811	n:2070000
TRIM28   2070000 perm   2108 sec   (982 perm/sec)   p_kst 3.917874e-04   p_cons 9.737826e-02   p_joint 1.787440e-05

Joint ci ratio: 6.359020e-01	ci left: 1.252475e-05	ci right 2.451897e-05	k: 37	n:2080000
Cons ci ratio: 8.274337e-03	ci left: 9.699258e-02	ci right 9.779893e-02	k: 202582	n:2080000
KS ci ratio: 1.373690e-01	ci left: 3.644607e-04	ci right 4.186769e-04	k: 813	n:2080000
TRIM28   2080000 perm   2126 sec   (978 perm/sec)   p_kst 3.908654e-04   p_cons 9.739519e-02   p_joint 1.778846e-05

Joint ci ratio: 6.276964e-01	ci left: 1.286657e-05	ci right 2.495588e-05	k: 38	n:2090000
Cons ci ratio: 8.254247e-03	ci left: 9.699930e-02	ci right 9.780373e-02	k: 203568	n:2090000
KS ci ratio: 1.366988e-01	ci left: 3.664134e-04	ci right 4.206326e-04	k: 821	n:2090000
TRIM28   2090000 perm   2144 sec   (975 perm/sec)   p_kst 3.928230e-04   p_cons 9.740096e-02   p_joint 1.818182e-05

Joint ci ratio: 6.276964e-01	ci left: 1.280530e-05	ci right 2.483704e-05	k: 38	n:2100000
Cons ci ratio: 8.233234e-03	ci left: 9.702877e-02	ci right 9.783139e-02	k: 204602	n:2100000
KS ci ratio: 1.363674e-01	ci left: 3.665083e-04	ci right 4.205993e-04	k: 825	n:2100000
TRIM28   2100000 perm   2164 sec   (970 perm/sec)   p_kst 3.928571e-04   p_cons 9.742952e-02   p_joint 1.809524e-05

Joint ci ratio: 6.276964e-01	ci left: 1.274461e-05	ci right 2.471933e-05	k: 38	n:2110000
Cons ci ratio: 8.214017e-03	ci left: 9.702295e-02	ci right 9.782365e-02	k: 205562	n:2110000
KS ci ratio: 1.356303e-01	ci left: 3.688916e-04	ci right 4.230164e-04	k: 834	n:2110000
TRIM28   2110000 perm   2182 sec   (967 perm/sec)   p_kst 3.952607e-04   p_cons 9.742275e-02   p_joint 1.800948e-05

Joint ci ratio: 5.334375e-01	ci left: 1.872677e-05	ci right 3.270049e-05	k: 53	n:2120000
Cons ci ratio: 8.193264e-03	ci left: 9.705298e-02	ci right 9.785189e-02	k: 206598	n:2120000
KS ci ratio: 1.353874e-01	ci left: 3.685186e-04	ci right 4.224841e-04	k: 837	n:2120000
TRIM28   2120000 perm   2202 sec   (963 perm/sec)   p_kst 3.948113e-04   p_cons 9.745189e-02   p_joint 2.500000e-05

Joint ci ratio: 5.285657e-01	ci left: 1.904534e-05	ci right 3.307888e-05	k: 54	n:2130000
Cons ci ratio: 8.174827e-03	ci left: 9.703634e-02	ci right 9.783330e-02	k: 207535	n:2130000
KS ci ratio: 1.350654e-01	ci left: 3.686029e-04	ci right 4.224420e-04	k: 841	n:2130000
TRIM28   2130000 perm   2220 sec   (959 perm/sec)   p_kst 3.948357e-04   p_cons 9.743427e-02   p_joint 2.535211e-05

Joint ci ratio: 5.285658e-01	ci left: 1.895635e-05	ci right 3.292431e-05	k: 54	n:2140000
Cons ci ratio: 8.155560e-03	ci left: 9.704037e-02	ci right 9.783548e-02	k: 208516	n:2140000
KS ci ratio: 1.349853e-01	ci left: 3.673319e-04	ci right 4.209511e-04	k: 842	n:2140000
TRIM28   2140000 perm   2241 sec   (955 perm/sec)   p_kst 3.934579e-04   p_cons 9.743738e-02   p_joint 2.523364e-05

Joint ci ratio: 5.238251e-01	ci left: 1.927146e-05	ci right 3.329757e-05	k: 55	n:2150000
Cons ci ratio: 8.136860e-03	ci left: 9.703509e-02	ci right 9.782832e-02	k: 209477	n:2150000
KS ci ratio: 1.347458e-01	ci left: 3.669717e-04	ci right 4.204356e-04	k: 845	n:2150000
TRIM28   2150000 perm   2260 sec   (951 perm/sec)   p_kst 3.930233e-04   p_cons 9.743116e-02   p_joint 2.558140e-05

Joint ci ratio: 5.238251e-01	ci left: 1.918224e-05	ci right 3.314342e-05	k: 55	n:2160000
Cons ci ratio: 8.118244e-03	ci left: 9.703078e-02	ci right 9.782215e-02	k: 210440	n:2160000
KS ci ratio: 1.343494e-01	ci left: 3.675096e-04	ci right 4.208818e-04	k: 850	n:2160000
TRIM28   2160000 perm   2281 sec   (947 perm/sec)   p_kst 3.935185e-04   p_cons 9.742593e-02   p_joint 2.546296e-05

Joint ci ratio: 5.238252e-01	ci left: 1.909385e-05	ci right 3.299068e-05	k: 55	n:2170000
Cons ci ratio: 8.097741e-03	ci left: 9.707021e-02	ci right 9.785990e-02	k: 211498	n:2170000
KS ci ratio: 1.341132e-01	ci left: 3.671521e-04	ci right 4.203711e-04	k: 853	n:2170000
TRIM28   2170000 perm   2302 sec   (943 perm/sec)   p_kst 3.930876e-04   p_cons 9.746452e-02   p_joint 2.534562e-05

Joint ci ratio: 5.238252e-01	ci left: 1.900626e-05	ci right 3.283935e-05	k: 55	n:2180000
Cons ci ratio: 8.080171e-03	ci left: 9.704884e-02	ci right 9.783663e-02	k: 212424	n:2180000
KS ci ratio: 1.338783e-01	ci left: 3.667979e-04	ci right 4.198651e-04	k: 856	n:2180000
TRIM28   2180000 perm   2322 sec   (939 perm/sec)   p_kst 3.926606e-04   p_cons 9.744220e-02   p_joint 2.522936e-05

Joint ci ratio: 5.192098e-01	ci left: 1.931595e-05	ci right 3.320565e-05	k: 56	n:2190000
Cons ci ratio: 8.061795e-03	ci left: 9.704772e-02	ci right 9.783371e-02	k: 213394	n:2190000
KS ci ratio: 1.335669e-01	ci left: 3.668884e-04	ci right 4.198354e-04	k: 860	n:2190000
TRIM28   2190000 perm   2345 sec   (934 perm/sec)   p_kst 3.926941e-04   p_cons 9.744018e-02   p_joint 2.557078e-05

Joint ci ratio: 5.192098e-01	ci left: 1.922815e-05	ci right 3.305472e-05	k: 56	n:2200000
Cons ci ratio: 8.042941e-03	ci left: 9.705977e-02	ci right 9.784401e-02	k: 214393	n:2200000
KS ci ratio: 1.332578e-01	ci left: 3.669783e-04	ci right 4.198059e-04	k: 864	n:2200000
TRIM28   2200000 perm   2366 sec   (930 perm/sec)   p_kst 3.927273e-04   p_cons 9.745136e-02   p_joint 2.545455e-05

Joint ci ratio: 5.147143e-01	ci left: 1.953456e-05	ci right 3.341621e-05	k: 57	n:2210000
Cons ci ratio: 8.024301e-03	ci left: 9.706991e-02	ci right 9.785241e-02	k: 215388	n:2210000
KS ci ratio: 1.329507e-01	ci left: 3.670674e-04	ci right 4.197765e-04	k: 868	n:2210000
TRIM28   2210000 perm   2385 sec   (926 perm/sec)   p_kst 3.927602e-04   p_cons 9.746063e-02   p_joint 2.579186e-05

Joint ci ratio: 5.147144e-01	ci left: 1.944656e-05	ci right 3.326569e-05	k: 57	n:2220000
Cons ci ratio: 8.005277e-03	ci left: 9.709121e-02	ci right 9.787201e-02	k: 216408	n:2220000
KS ci ratio: 1.327980e-01	ci left: 3.662849e-04	ci right 4.188165e-04	k: 870	n:2220000
TRIM28   2220000 perm   2404 sec   (923 perm/sec)   p_kst 3.918919e-04   p_cons 9.748108e-02   p_joint 2.567568e-05

Joint ci ratio: 5.147144e-01	ci left: 1.935936e-05	ci right 3.311652e-05	k: 57	n:2230000
Cons ci ratio: 7.987243e-03	ci left: 9.709351e-02	ci right 9.787256e-02	k: 217386	n:2230000
KS ci ratio: 1.326459e-01	ci left: 3.655095e-04	ci right 4.178650e-04	k: 872	n:2230000
TRIM28   2230000 perm   2424 sec   (920 perm/sec)   p_kst 3.910314e-04   p_cons 9.748251e-02   p_joint 2.556054e-05

Joint ci ratio: 5.977885e-01	ci left: 1.351338e-05	ci right 2.534447e-05	k: 42	n:2240000
Cons ci ratio: 7.969189e-03	ci left: 9.709891e-02	ci right 9.787624e-02	k: 218371	n:2240000
KS ci ratio: 1.324943e-01	ci left: 3.647409e-04	ci right 4.169220e-04	k: 874	n:2240000
TRIM28   2240000 perm   2444 sec   (917 perm/sec)   p_kst 3.901786e-04   p_cons 9.748705e-02   p_joint 1.875000e-05

Joint ci ratio: 5.977886e-01	ci left: 1.345332e-05	ci right 2.523183e-05	k: 42	n:2250000
Cons ci ratio: 7.951558e-03	ci left: 9.709761e-02	ci right 9.787320e-02	k: 219341	n:2250000
KS ci ratio: 1.321925e-01	ci left: 3.648388e-04	ci right 4.169056e-04	k: 878	n:2250000
TRIM28   2250000 perm   2466 sec   (912 perm/sec)   p_kst 3.902222e-04   p_cons 9.748489e-02   p_joint 1.866667e-05

Joint ci ratio: 5.977886e-01	ci left: 1.339380e-05	ci right 2.512018e-05	k: 42	n:2260000
Cons ci ratio: 7.933465e-03	ci left: 9.710914e-02	ci right 9.788305e-02	k: 220340	n:2260000
KS ci ratio: 1.318927e-01	ci left: 3.649359e-04	ci right 4.168892e-04	k: 882	n:2260000
TRIM28   2260000 perm   2487 sec   (909 perm/sec)   p_kst 3.902655e-04   p_cons 9.749558e-02   p_joint 1.858407e-05

Joint ci ratio: 5.977886e-01	ci left: 1.333479e-05	ci right 2.500952e-05	k: 42	n:2270000
Cons ci ratio: 7.915930e-03	ci left: 9.711089e-02	ci right 9.788309e-02	k: 221317	n:2270000
KS ci ratio: 1.315950e-01	ci left: 3.650323e-04	ci right 4.168729e-04	k: 886	n:2270000
TRIM28   2270000 perm   2508 sec   (905 perm/sec)   p_kst 3.903084e-04   p_cons 9.749648e-02   p_joint 1.850220e-05

Joint ci ratio: 5.977886e-01	ci left: 1.327631e-05	ci right 2.489983e-05	k: 42	n:2280000
Cons ci ratio: 7.898276e-03	ci left: 9.711788e-02	ci right 9.788841e-02	k: 222306	n:2280000
KS ci ratio: 1.315209e-01	ci left: 3.638554e-04	ci right 4.154975e-04	k: 887	n:2280000
TRIM28   2280000 perm   2530 sec   (901 perm/sec)   p_kst 3.890351e-04   p_cons 9.750263e-02   p_joint 1.842105e-05

Joint ci ratio: 5.977887e-01	ci left: 1.321833e-05	ci right 2.479110e-05	k: 42	n:2290000
Cons ci ratio: 7.881267e-03	ci left: 9.711304e-02	ci right 9.788186e-02	k: 223268	n:2290000
KS ci ratio: 1.313731e-01	ci left: 3.631112e-04	ci right 4.145852e-04	k: 889	n:2290000
TRIM28   2290000 perm   2551 sec   (898 perm/sec)   p_kst 3.882096e-04   p_cons 9.749694e-02   p_joint 1.834061e-05

Joint ci ratio: 5.977887e-01	ci left: 1.316086e-05	ci right 2.468331e-05	k: 42	n:2300000
Cons ci ratio: 7.863823e-03	ci left: 9.712040e-02	ci right 9.788757e-02	k: 224258	n:2300000
KS ci ratio: 1.309325e-01	ci left: 3.640556e-04	ci right 4.154769e-04	k: 895	n:2300000
TRIM28   2300000 perm   2572 sec   (894 perm/sec)   p_kst 3.891304e-04   p_cons 9.750348e-02   p_joint 1.826087e-05

Joint ci ratio: 5.977887e-01	ci left: 1.310389e-05	ci right 2.457646e-05	k: 42	n:2310000
Cons ci ratio: 7.846745e-03	ci left: 9.712208e-02	ci right 9.788759e-02	k: 225235	n:2310000
KS ci ratio: 1.308595e-01	ci left: 3.628983e-04	ci right 4.141254e-04	k: 896	n:2310000
TRIM28   2310000 perm   2591 sec   (892 perm/sec)   p_kst 3.878788e-04   p_cons 9.750433e-02   p_joint 1.818182e-05

Joint ci ratio: 5.977887e-01	ci left: 1.304740e-05	ci right 2.447053e-05	k: 42	n:2320000
Cons ci ratio: 7.829529e-03	ci left: 9.712934e-02	ci right 9.789322e-02	k: 226225	n:2320000
KS ci ratio: 1.303518e-01	ci left: 3.642527e-04	ci right 4.154561e-04	k: 903	n:2320000
TRIM28   2320000 perm   2610 sec   (889 perm/sec)   p_kst 3.892241e-04   p_cons 9.751078e-02   p_joint 1.810345e-05

Joint ci ratio: 5.909565e-01	ci left: 1.335596e-05	ci right 2.485860e-05	k: 43	n:2330000
Cons ci ratio: 7.812407e-03	ci left: 9.713696e-02	ci right 9.789923e-02	k: 227216	n:2330000
KS ci ratio: 1.297076e-01	ci left: 3.664265e-04	ci right 4.176612e-04	k: 912	n:2330000
TRIM28   2330000 perm   2632 sec   (885 perm/sec)   p_kst 3.914163e-04   p_cons 9.751760e-02   p_joint 1.845494e-05

Joint ci ratio: 5.909566e-01	ci left: 1.329888e-05	ci right 2.475236e-05	k: 43	n:2340000
Cons ci ratio: 7.795340e-03	ci left: 9.714581e-02	ci right 9.790647e-02	k: 228210	n:2340000
KS ci ratio: 1.292834e-01	ci left: 3.673416e-04	ci right 4.185235e-04	k: 918	n:2340000
TRIM28   2340000 perm   2653 sec   (882 perm/sec)   p_kst 3.923077e-04   p_cons 9.752564e-02   p_joint 1.837607e-05

Joint ci ratio: 5.909566e-01	ci left: 1.324229e-05	ci right 2.464704e-05	k: 43	n:2350000
Cons ci ratio: 7.779211e-03	ci left: 9.713589e-02	ci right 9.789489e-02	k: 229160	n:2350000
KS ci ratio: 1.290730e-01	ci left: 3.670138e-04	ci right 4.180603e-04	k: 921	n:2350000
TRIM28   2350000 perm   2673 sec   (879 perm/sec)   p_kst 3.919149e-04   p_cons 9.751489e-02   p_joint 1.829787e-05

Joint ci ratio: 5.909566e-01	ci left: 1.318618e-05	ci right 2.454260e-05	k: 43	n:2360000
Cons ci ratio: 7.761631e-03	ci left: 9.716116e-02	ci right 9.791864e-02	k: 230193	n:2360000
KS ci ratio: 1.287939e-01	ci left: 3.670989e-04	ci right 4.180385e-04	k: 925	n:2360000
TRIM28   2360000 perm   2695 sec   (876 perm/sec)   p_kst 3.919492e-04   p_cons 9.753941e-02   p_joint 1.822034e-05

Joint ci ratio: 5.909566e-01	ci left: 1.313054e-05	ci right 2.443904e-05	k: 43	n:2370000
Cons ci ratio: 7.745470e-03	ci left: 9.715674e-02	ci right 9.791260e-02	k: 231156	n:2370000
KS ci ratio: 1.284475e-01	ci left: 3.675918e-04	ci right 4.184521e-04	k: 930	n:2370000
TRIM28   2370000 perm   2716 sec   (873 perm/sec)   p_kst 3.924051e-04   p_cons 9.753418e-02   p_joint 1.814346e-05

Joint ci ratio: 5.909566e-01	ci left: 1.307537e-05	ci right 2.433636e-05	k: 43	n:2380000
Cons ci ratio: 7.729002e-03	ci left: 9.716158e-02	ci right 9.791587e-02	k: 232141	n:2380000
KS ci ratio: 1.281040e-01	ci left: 3.680807e-04	ci right 4.188621e-04	k: 935	n:2380000
TRIM28   2380000 perm   2738 sec   (869 perm/sec)   p_kst 3.928571e-04   p_cons 9.753824e-02   p_joint 1.806723e-05

Joint ci ratio: 5.909567e-01	ci left: 1.302066e-05	ci right 2.423453e-05	k: 43	n:2390000
Cons ci ratio: 7.712548e-03	ci left: 9.716848e-02	ci right 9.792120e-02	k: 233131	n:2390000
KS ci ratio: 1.278992e-01	ci left: 3.677556e-04	ci right 4.184050e-04	k: 938	n:2390000
TRIM28   2390000 perm   2758 sec   (867 perm/sec)   p_kst 3.924686e-04   p_cons 9.754435e-02   p_joint 1.799163e-05

Joint ci ratio: 5.909567e-01	ci left: 1.296641e-05	ci right 2.413356e-05	k: 43	n:2400000
Cons ci ratio: 7.696636e-03	ci left: 9.716533e-02	ci right 9.791647e-02	k: 234097	n:2400000
KS ci ratio: 1.275600e-01	ci left: 3.682401e-04	ci right 4.188115e-04	k: 943	n:2400000
TRIM28   2400000 perm   2782 sec   (863 perm/sec)   p_kst 3.929167e-04   p_cons 9.754042e-02   p_joint 1.791667e-05

Joint ci ratio: 5.909567e-01	ci left: 1.291261e-05	ci right 2.403342e-05	k: 43	n:2410000
Cons ci ratio: 7.681256e-03	ci left: 9.715227e-02	ci right 9.790180e-02	k: 235039	n:2410000
KS ci ratio: 1.272906e-01	ci left: 3.683190e-04	ci right 4.187863e-04	k: 947	n:2410000
TRIM28   2410000 perm   2804 sec   (859 perm/sec)   p_kst 3.929461e-04   p_cons 9.752656e-02   p_joint 1.784232e-05

Joint ci ratio: 5.909567e-01	ci left: 1.285925e-05	ci right 2.393411e-05	k: 43	n:2420000
Cons ci ratio: 7.665266e-03	ci left: 9.715541e-02	ci right 9.790340e-02	k: 236020	n:2420000
KS ci ratio: 1.271566e-01	ci left: 3.675971e-04	ci right 4.179085e-04	k: 949	n:2420000
TRIM28   2420000 perm   2825 sec   (857 perm/sec)   p_kst 3.921488e-04   p_cons 9.752893e-02   p_joint 1.776860e-05

Joint ci ratio: 5.909568e-01	ci left: 1.280633e-05	ci right 2.383561e-05	k: 43	n:2430000
Cons ci ratio: 7.649161e-03	ci left: 9.716346e-02	ci right 9.790993e-02	k: 237013	n:2430000
KS ci ratio: 1.270230e-01	ci left: 3.668813e-04	ci right 4.170379e-04	k: 951	n:2430000
TRIM28   2430000 perm   2847 sec   (853 perm/sec)   p_kst 3.913580e-04   p_cons 9.753621e-02   p_joint 1.769547e-05

Joint ci ratio: 5.909568e-01	ci left: 1.275385e-05	ci right 2.373793e-05	k: 43	n:2440000
Cons ci ratio: 7.632269e-03	ci left: 9.719190e-02	ci right 9.793693e-02	k: 238056	n:2440000
KS ci ratio: 1.264925e-01	ci left: 3.685524e-04	ci right 4.187113e-04	k: 959	n:2440000
TRIM28   2440000 perm   2868 sec   (851 perm/sec)   p_kst 3.930328e-04   p_cons 9.756393e-02   p_joint 1.762295e-05

Joint ci ratio: 5.843536e-01	ci left: 1.304920e-05	ci right 2.410929e-05	k: 44	n:2450000
Cons ci ratio: 7.617023e-03	ci left: 9.718465e-02	ci right 9.792814e-02	k: 239012	n:2450000
KS ci ratio: 1.262954e-01	ci left: 3.682339e-04	ci right 4.182655e-04	k: 962	n:2450000
TRIM28   2450000 perm   2888 sec   (848 perm/sec)   p_kst 3.926531e-04   p_cons 9.755592e-02   p_joint 1.795918e-05

Joint ci ratio: 5.779669e-01	ci left: 1.334284e-05	ci right 2.447697e-05	k: 45	n:2460000
Cons ci ratio: 7.601729e-03	ci left: 9.718072e-02	ci right 9.792267e-02	k: 239976	n:2460000
KS ci ratio: 1.261645e-01	ci left: 3.675243e-04	ci right 4.174039e-04	k: 964	n:2460000
TRIM28   2460000 perm   2908 sec   (846 perm/sec)   p_kst 3.918699e-04   p_cons 9.755122e-02   p_joint 1.829268e-05

Joint ci ratio: 5.717852e-01	ci left: 1.363476e-05	ci right 2.484104e-05	k: 46	n:2470000
Cons ci ratio: 7.585253e-03	ci left: 9.720632e-02	ci right 9.794685e-02	k: 241013	n:2470000
KS ci ratio: 1.260992e-01	ci left: 3.664284e-04	ci right 4.161317e-04	k: 965	n:2470000
TRIM28   2470000 perm   2929 sec   (843 perm/sec)   p_kst 3.906883e-04   p_cons 9.757611e-02   p_joint 1.862348e-05

Joint ci ratio: 5.717852e-01	ci left: 1.357978e-05	ci right 2.474087e-05	k: 46	n:2480000
Cons ci ratio: 7.569022e-03	ci left: 9.722850e-02	ci right 9.796761e-02	k: 242042	n:2480000
KS ci ratio: 1.257741e-01	ci left: 3.669035e-04	ci right 4.165333e-04	k: 970	n:2480000
TRIM28   2480000 perm   2956 sec   (839 perm/sec)   p_kst 3.911290e-04   p_cons 9.759758e-02   p_joint 1.854839e-05

Joint ci ratio: 5.717853e-01	ci left: 1.352524e-05	ci right 2.464151e-05	k: 46	n:2490000
Cons ci ratio: 7.553997e-03	ci left: 9.722484e-02	ci right 9.796244e-02	k: 243007	n:2490000
KS ci ratio: 1.253873e-01	ci left: 3.677640e-04	ci right 4.173458e-04	k: 976	n:2490000
TRIM28   2490000 perm   2977 sec   (837 perm/sec)   p_kst 3.919679e-04   p_cons 9.759317e-02   p_joint 1.847390e-05

Joint ci ratio: 5.717853e-01	ci left: 1.347114e-05	ci right 2.454295e-05	k: 46	n:2500000
Cons ci ratio: 7.538119e-03	ci left: 9.724317e-02	ci right 9.797936e-02	k: 244027	n:2500000
KS ci ratio: 1.253874e-01	ci left: 3.662929e-04	ci right 4.156764e-04	k: 976	n:2500000
TRIM28   2500000 perm   3001 sec   (833 perm/sec)   p_kst 3.904000e-04   p_cons 9.761080e-02   p_joint 1.840000e-05

Joint ci ratio: 5.717853e-01	ci left: 1.341747e-05	ci right 2.444517e-05	k: 46	n:2510000
Cons ci ratio: 7.522767e-03	ci left: 9.725142e-02	ci right 9.798616e-02	k: 245022	n:2510000
KS ci ratio: 1.253875e-01	ci left: 3.648335e-04	ci right 4.140204e-04	k: 976	n:2510000
TRIM28   2510000 perm   3022 sec   (831 perm/sec)   p_kst 3.888446e-04   p_cons 9.761833e-02   p_joint 1.832669e-05

Joint ci ratio: 5.717853e-01	ci left: 1.336423e-05	ci right 2.434816e-05	k: 46	n:2520000
Cons ci ratio: 7.508032e-03	ci left: 9.724732e-02	ci right 9.798059e-02	k: 245986	n:2520000
KS ci ratio: 1.253876e-01	ci left: 3.633858e-04	ci right 4.123774e-04	k: 976	n:2520000
TRIM28   2520000 perm   3043 sec   (828 perm/sec)   p_kst 3.873016e-04   p_cons 9.761349e-02   p_joint 1.825397e-05

Joint ci ratio: 5.717853e-01	ci left: 1.331141e-05	ci right 2.425192e-05	k: 46	n:2530000
Cons ci ratio: 7.492493e-03	ci left: 9.726417e-02	ci right 9.799604e-02	k: 247003	n:2530000
KS ci ratio: 1.252595e-01	ci left: 3.627152e-04	ci right 4.115628e-04	k: 978	n:2530000
TRIM28   2530000 perm   3065 sec   (825 perm/sec)   p_kst 3.865613e-04   p_cons 9.762964e-02   p_joint 1.818182e-05

Joint ci ratio: 5.717854e-01	ci left: 1.325900e-05	ci right 2.415644e-05	k: 46	n:2540000
Cons ci ratio: 7.478269e-03	ci left: 9.725219e-02	ci right 9.798258e-02	k: 247947	n:2540000
KS ci ratio: 1.251318e-01	ci left: 3.620499e-04	ci right 4.107545e-04	k: 980	n:2540000
TRIM28   2540000 perm   3088 sec   (823 perm/sec)   p_kst 3.858268e-04   p_cons 9.761693e-02   p_joint 1.811024e-05

Joint ci ratio: 5.717854e-01	ci left: 1.320700e-05	ci right 2.406171e-05	k: 46	n:2550000
Cons ci ratio: 7.463943e-03	ci left: 9.724462e-02	ci right 9.797355e-02	k: 248902	n:2550000
KS ci ratio: 1.248141e-01	ci left: 3.625296e-04	ci right 4.111658e-04	k: 985	n:2550000
TRIM28   2550000 perm   3109 sec   (820 perm/sec)   p_kst 3.862745e-04   p_cons 9.760863e-02   p_joint 1.803922e-05

Joint ci ratio: 4.862099e-01	ci left: 1.925310e-05	ci right 3.192433e-05	k: 64	n:2560000
Cons ci ratio: 7.448758e-03	ci left: 9.725934e-02	ci right 9.798688e-02	k: 249914	n:2560000
KS ci ratio: 1.246246e-01	ci left: 3.622488e-04	ci right 4.107681e-04	k: 988	n:2560000
TRIM28   2560000 perm   3133 sec   (817 perm/sec)   p_kst 3.859375e-04   p_cons 9.762266e-02   p_joint 2.500000e-05

Joint ci ratio: 4.862099e-01	ci left: 1.917818e-05	ci right 3.180011e-05	k: 64	n:2570000
Cons ci ratio: 7.434288e-03	ci left: 9.725918e-02	ci right 9.798531e-02	k: 250888	n:2570000
KS ci ratio: 1.244989e-01	ci left: 3.615932e-04	ci right 4.099722e-04	k: 990	n:2570000
TRIM28   2570000 perm   3157 sec   (814 perm/sec)   p_kst 3.852140e-04   p_cons 9.762179e-02   p_joint 2.490272e-05

Joint ci ratio: 4.862099e-01	ci left: 1.910385e-05	ci right 3.167686e-05	k: 64	n:2580000
Cons ci ratio: 7.419626e-03	ci left: 9.726560e-02	ci right 9.799034e-02	k: 251879	n:2580000
KS ci ratio: 1.241236e-01	ci left: 3.624449e-04	ci right 4.107810e-04	k: 996	n:2580000
TRIM28   2580000 perm   3179 sec   (812 perm/sec)   p_kst 3.860465e-04   p_cons 9.762752e-02   p_joint 2.480620e-05

Joint ci ratio: 4.862100e-01	ci left: 1.903009e-05	ci right 3.155455e-05	k: 64	n:2590000
Cons ci ratio: 7.405211e-03	ci left: 9.726812e-02	ci right 9.799146e-02	k: 252860	n:2590000
KS ci ratio: 1.238135e-01	ci left: 3.629162e-04	ci right 4.111853e-04	k: 1001	n:2590000
TRIM28   2590000 perm   3203 sec   (809 perm/sec)   p_kst 3.864865e-04   p_cons 9.762934e-02   p_joint 2.471042e-05

Joint ci ratio: 4.862100e-01	ci left: 1.895690e-05	ci right 3.143319e-05	k: 64	n:2600000
Cons ci ratio: 7.390494e-03	ci left: 9.727984e-02	ci right 9.800182e-02	k: 253865	n:2600000
KS ci ratio: 1.236286e-01	ci left: 3.626385e-04	ci right 4.107934e-04	k: 1004	n:2600000
TRIM28   2600000 perm   3226 sec   (806 perm/sec)   p_kst 3.861538e-04   p_cons 9.764038e-02   p_joint 2.461538e-05

Joint ci ratio: 4.862100e-01	ci left: 1.888426e-05	ci right 3.131276e-05	k: 64	n:2610000
Cons ci ratio: 7.376634e-03	ci left: 9.727311e-02	ci right 9.799368e-02	k: 254822	n:2610000
KS ci ratio: 1.235058e-01	ci left: 3.619917e-04	ci right 4.100094e-04	k: 1006	n:2610000
TRIM28   2610000 perm   3249 sec   (803 perm/sec)   p_kst 3.854406e-04   p_cons 9.763295e-02   p_joint 2.452107e-05

Joint ci ratio: 4.862100e-01	ci left: 1.881219e-05	ci right 3.119324e-05	k: 64	n:2620000
Cons ci ratio: 7.362101e-03	ci left: 9.728434e-02	ci right 9.800357e-02	k: 255826	n:2620000
KS ci ratio: 1.233223e-01	ci left: 3.617197e-04	ci right 4.096249e-04	k: 1009	n:2620000
TRIM28   2620000 perm   3272 sec   (801 perm/sec)   p_kst 3.851145e-04   p_cons 9.764351e-02   p_joint 2.442748e-05

Joint ci ratio: 4.862101e-01	ci left: 1.874066e-05	ci right 3.107464e-05	k: 64	n:2630000
Cons ci ratio: 7.348178e-03	ci left: 9.728296e-02	ci right 9.800082e-02	k: 256797	n:2630000
KS ci ratio: 1.232004e-01	ci left: 3.610813e-04	ci right 4.088513e-04	k: 1011	n:2630000
TRIM28   2630000 perm   3295 sec   (798 perm/sec)   p_kst 3.844106e-04   p_cons 9.764144e-02   p_joint 2.433460e-05

Joint ci ratio: 4.825125e-01	ci left: 1.900218e-05	ci right 3.138165e-05	k: 65	n:2640000
Cons ci ratio: 7.334538e-03	ci left: 9.727668e-02	ci right 9.799315e-02	k: 257755	n:2640000
KS ci ratio: 1.227764e-01	ci left: 3.622836e-04	ci right 4.100356e-04	k: 1018	n:2640000
TRIM28   2640000 perm   3318 sec   (796 perm/sec)   p_kst 3.856061e-04   p_cons 9.763447e-02   p_joint 2.462121e-05

Joint ci ratio: 4.788981e-01	ci left: 1.926209e-05	ci right 3.168600e-05	k: 66	n:2650000
Cons ci ratio: 7.320723e-03	ci left: 9.727647e-02	ci right 9.799158e-02	k: 258729	n:2650000
KS ci ratio: 1.225362e-01	ci left: 3.623796e-04	ci right 4.100440e-04	k: 1022	n:2650000
TRIM28   2650000 perm   3340 sec   (793 perm/sec)   p_kst 3.856604e-04   p_cons 9.763358e-02   p_joint 2.490566e-05

Joint ci ratio: 4.788981e-01	ci left: 1.918967e-05	ci right 3.156688e-05	k: 66	n:2660000
Cons ci ratio: 7.306721e-03	ci left: 9.728264e-02	ci right 9.799643e-02	k: 259720	n:2660000
KS ci ratio: 1.224166e-01	ci left: 3.617461e-04	ci right 4.092774e-04	k: 1024	n:2660000
TRIM28   2660000 perm   3365 sec   (790 perm/sec)   p_kst 3.849624e-04   p_cons 9.763910e-02   p_joint 2.481203e-05

Joint ci ratio: 4.788981e-01	ci left: 1.911780e-05	ci right 3.144865e-05	k: 66	n:2670000
Cons ci ratio: 7.292954e-03	ci left: 9.728503e-02	ci right 9.799749e-02	k: 260701	n:2670000
KS ci ratio: 1.221784e-01	ci left: 3.618435e-04	ci right 4.092885e-04	k: 1028	n:2670000
TRIM28   2670000 perm   3389 sec   (788 perm/sec)   p_kst 3.850187e-04   p_cons 9.764082e-02   p_joint 2.471910e-05

Joint ci ratio: 4.788981e-01	ci left: 1.904647e-05	ci right 3.133131e-05	k: 66	n:2680000
Cons ci ratio: 7.278848e-03	ci left: 9.729747e-02	ci right 9.800863e-02	k: 261709	n:2680000
KS ci ratio: 1.221192e-01	ci left: 3.608551e-04	ci right 4.081458e-04	k: 1029	n:2680000
TRIM28   2680000 perm   3413 sec   (785 perm/sec)   p_kst 3.839552e-04   p_cons 9.765261e-02   p_joint 2.462687e-05

Joint ci ratio: 4.753637e-01	ci left: 1.930268e-05	ci right 3.163098e-05	k: 67	n:2690000
Cons ci ratio: 7.265421e-03	ci left: 9.729533e-02	ci right 9.800516e-02	k: 262678	n:2690000
KS ci ratio: 1.217650e-01	ci left: 3.616761e-04	ci right 4.089270e-04	k: 1035	n:2690000
TRIM28   2690000 perm   3436 sec   (783 perm/sec)   p_kst 3.847584e-04   p_cons 9.764981e-02   p_joint 2.490706e-05

Joint ci ratio: 4.719064e-01	ci left: 1.955733e-05	ci right 3.192812e-05	k: 68	n:2700000
Cons ci ratio: 7.251992e-03	ci left: 9.729507e-02	ci right 9.800357e-02	k: 263652	n:2700000
KS ci ratio: 1.214722e-01	ci left: 3.621321e-04	ci right 4.093206e-04	k: 1040	n:2700000
TRIM28   2700000 perm   3461 sec   (780 perm/sec)   p_kst 3.851852e-04   p_cons 9.764889e-02   p_joint 2.518519e-05

Joint ci ratio: 4.685235e-01	ci left: 1.981043e-05	ci right 3.222274e-05	k: 69	n:2710000
Cons ci ratio: 7.238683e-03	ci left: 9.729370e-02	ci right 9.800089e-02	k: 264623	n:2710000
KS ci ratio: 1.214140e-01	ci left: 3.611536e-04	ci right 4.081905e-04	k: 1041	n:2710000
TRIM28   2710000 perm   3485 sec   (778 perm/sec)   p_kst 3.841328e-04   p_cons 9.764686e-02   p_joint 2.546125e-05

Joint ci ratio: 4.652123e-01	ci left: 2.006198e-05	ci right 3.251489e-05	k: 70	n:2720000
Cons ci ratio: 7.224935e-03	ci left: 9.730482e-02	ci right 9.801074e-02	k: 265628	n:2720000
KS ci ratio: 1.211816e-01	ci left: 3.612518e-04	ci right 4.082049e-04	k: 1045	n:2720000
TRIM28   2720000 perm   3514 sec   (774 perm/sec)   p_kst 3.841912e-04   p_cons 9.765735e-02   p_joint 2.573529e-05

Joint ci ratio: 4.652123e-01	ci left: 1.998849e-05	ci right 3.239578e-05	k: 70	n:2730000
Cons ci ratio: 7.211878e-03	ci left: 9.730087e-02	ci right 9.800548e-02	k: 266592	n:2730000
KS ci ratio: 1.207781e-01	ci left: 3.624150e-04	ci right 4.093513e-04	k: 1052	n:2730000
TRIM28   2730000 perm   3536 sec   (772 perm/sec)   p_kst 3.853480e-04   p_cons 9.765275e-02   p_joint 2.564103e-05

Joint ci ratio: 4.652123e-01	ci left: 1.991554e-05	ci right 3.227755e-05	k: 70	n:2740000
Cons ci ratio: 7.197998e-03	ci left: 9.731881e-02	ci right 9.802219e-02	k: 267616	n:2740000
KS ci ratio: 1.206636e-01	ci left: 3.618002e-04	ci right 4.086093e-04	k: 1054	n:2740000
TRIM28   2740000 perm   3562 sec   (769 perm/sec)   p_kst 3.846715e-04   p_cons 9.767007e-02   p_joint 2.554745e-05

Joint ci ratio: 4.652123e-01	ci left: 1.984312e-05	ci right 3.216018e-05	k: 70	n:2750000
Cons ci ratio: 7.185073e-03	ci left: 9.731520e-02	ci right 9.801729e-02	k: 268581	n:2750000
KS ci ratio: 1.204355e-01	ci left: 3.618953e-04	ci right 4.086218e-04	k: 1058	n:2750000
TRIM28   2750000 perm   3585 sec   (767 perm/sec)   p_kst 3.847273e-04   p_cons 9.766582e-02   p_joint 2.545455e-05

Joint ci ratio: 4.652123e-01	ci left: 1.977122e-05	ci right 3.204366e-05	k: 70	n:2760000
Cons ci ratio: 7.172600e-03	ci left: 9.730221e-02	ci right 9.800298e-02	k: 269520	n:2760000
KS ci ratio: 1.203219e-01	ci left: 3.612869e-04	ci right 4.078878e-04	k: 1060	n:2760000
TRIM28   2760000 perm   3608 sec   (765 perm/sec)   p_kst 3.840580e-04   p_cons 9.765217e-02   p_joint 2.536232e-05

Joint ci ratio: 4.619703e-01	ci left: 2.001868e-05	ci right 3.233088e-05	k: 71	n:2770000
Cons ci ratio: 7.159268e-03	ci left: 9.731203e-02	ci right 9.801156e-02	k: 270522	n:2770000
KS ci ratio: 1.201522e-01	ci left: 3.610330e-04	ci right 4.075309e-04	k: 1063	n:2770000
TRIM28   2770000 perm   3632 sec   (763 perm/sec)   p_kst 3.837545e-04   p_cons 9.766137e-02   p_joint 2.563177e-05

Joint ci ratio: 4.619704e-01	ci left: 1.994667e-05	ci right 3.221458e-05	k: 71	n:2780000
Cons ci ratio: 7.146462e-03	ci left: 9.731064e-02	ci right 9.800891e-02	k: 271493	n:2780000
KS ci ratio: 1.199270e-01	ci left: 3.611300e-04	ci right 4.075470e-04	k: 1067	n:2780000
TRIM28   2780000 perm   3657 sec   (760 perm/sec)   p_kst 3.838129e-04   p_cons 9.765935e-02   p_joint 2.553957e-05

Joint ci ratio: 4.619704e-01	ci left: 1.987517e-05	ci right 3.209912e-05	k: 71	n:2790000
Cons ci ratio: 7.133782e-03	ci left: 9.730783e-02	ci right 9.800483e-02	k: 272460	n:2790000
KS ci ratio: 1.198709e-01	ci left: 3.601833e-04	ci right 4.064554e-04	k: 1068	n:2790000
TRIM28   2790000 perm   3681 sec   (758 perm/sec)   p_kst 3.827957e-04   p_cons 9.765591e-02   p_joint 2.544803e-05

Joint ci ratio: 4.587952e-01	ci left: 2.011990e-05	ci right 3.238278e-05	k: 72	n:2800000
Cons ci ratio: 7.121632e-03	ci left: 9.729363e-02	ci right 9.798934e-02	k: 273395	n:2800000
KS ci ratio: 1.197031e-01	ci left: 3.599362e-04	ci right 4.061073e-04	k: 1071	n:2800000
TRIM28   2800000 perm   3708 sec   (755 perm/sec)   p_kst 3.825000e-04   p_cons 9.764107e-02   p_joint 2.571429e-05

Joint ci ratio: 4.587953e-01	ci left: 2.004830e-05	ci right 3.226754e-05	k: 72	n:2810000
Cons ci ratio: 7.107921e-03	ci left: 9.731969e-02	ci right 9.801424e-02	k: 274443	n:2810000
KS ci ratio: 1.194804e-01	ci left: 3.600362e-04	ci right 4.061281e-04	k: 1075	n:2810000
TRIM28   2810000 perm   3732 sec   (753 perm/sec)   p_kst 3.825623e-04   p_cons 9.766655e-02   p_joint 2.562278e-05

Joint ci ratio: 4.587953e-01	ci left: 1.997720e-05	ci right 3.215311e-05	k: 72	n:2820000
Cons ci ratio: 7.095159e-03	ci left: 9.732396e-02	ci right 9.801729e-02	k: 275430	n:2820000
KS ci ratio: 1.193142e-01	ci left: 3.597916e-04	ci right 4.057835e-04	k: 1078	n:2820000
TRIM28   2820000 perm   3757 sec   (751 perm/sec)   p_kst 3.822695e-04   p_cons 9.767021e-02   p_joint 2.553191e-05

Joint ci ratio: 4.587953e-01	ci left: 1.990661e-05	ci right 3.203950e-05	k: 72	n:2830000
Cons ci ratio: 7.082452e-03	ci left: 9.732856e-02	ci right 9.802067e-02	k: 276418	n:2830000
KS ci ratio: 1.189838e-01	ci left: 3.605772e-04	ci right 4.065330e-04	k: 1084	n:2830000
TRIM28   2830000 perm   3781 sec   (749 perm/sec)   p_kst 3.830389e-04   p_cons 9.767420e-02   p_joint 2.544170e-05

Joint ci ratio: 4.587953e-01	ci left: 1.983652e-05	ci right 3.192669e-05	k: 72	n:2840000
Cons ci ratio: 7.070209e-03	ci left: 9.732328e-02	ci right 9.801416e-02	k: 277378	n:2840000
KS ci ratio: 1.189291e-01	ci left: 3.596492e-04	ci right 4.054641e-04	k: 1085	n:2840000
TRIM28   2840000 perm   3809 sec   (746 perm/sec)   p_kst 3.820423e-04   p_cons 9.766831e-02   p_joint 2.535211e-05

Joint ci ratio: 4.587953e-01	ci left: 1.976692e-05	ci right 3.181466e-05	k: 72	n:2850000
Cons ci ratio: 7.058085e-03	ci left: 9.731664e-02	ci right 9.800628e-02	k: 278334	n:2850000
KS ci ratio: 1.187652e-01	ci left: 3.594086e-04	ci right 4.051253e-04	k: 1088	n:2850000
TRIM28   2850000 perm   3837 sec   (743 perm/sec)   p_kst 3.817544e-04   p_cons 9.766105e-02   p_joint 2.526316e-05

Joint ci ratio: 4.587954e-01	ci left: 1.969780e-05	ci right 3.170342e-05	k: 72	n:2860000
Cons ci ratio: 7.046204e-03	ci left: 9.730551e-02	ci right 9.799391e-02	k: 279277	n:2860000
KS ci ratio: 1.184934e-01	ci left: 3.598483e-04	ci right 4.055089e-04	k: 1093	n:2860000
TRIM28   2860000 perm   3861 sec   (741 perm/sec)   p_kst 3.821678e-04   p_cons 9.764930e-02   p_joint 2.517483e-05

Joint ci ratio: 4.587954e-01	ci left: 1.962917e-05	ci right 3.159296e-05	k: 72	n:2870000
Cons ci ratio: 7.033730e-03	ci left: 9.731081e-02	ci right 9.799802e-02	k: 280267	n:2870000
KS ci ratio: 1.182774e-01	ci left: 3.599469e-04	ci right 4.055310e-04	k: 1097	n:2870000
TRIM28   2870000 perm   3888 sec   (738 perm/sec)   p_kst 3.822300e-04   p_cons 9.765401e-02   p_joint 2.508711e-05

Joint ci ratio: 4.587954e-01	ci left: 1.956101e-05	ci right 3.148326e-05	k: 72	n:2880000
Cons ci ratio: 7.021986e-03	ci left: 9.729943e-02	ci right 9.798541e-02	k: 281209	n:2880000
KS ci ratio: 1.180625e-01	ci left: 3.600449e-04	ci right 4.055528e-04	k: 1101	n:2880000
TRIM28   2880000 perm   3914 sec   (736 perm/sec)   p_kst 3.822917e-04   p_cons 9.764201e-02   p_joint 2.500000e-05

Joint ci ratio: 4.556848e-01	ci left: 1.979948e-05	ci right 3.175995e-05	k: 73	n:2890000
Cons ci ratio: 7.010191e-03	ci left: 9.729090e-02	ci right 9.797566e-02	k: 282159	n:2890000
KS ci ratio: 1.177956e-01	ci left: 3.604782e-04	ci right 4.059306e-04	k: 1106	n:2890000
TRIM28   2890000 perm   3939 sec   (734 perm/sec)   p_kst 3.826990e-04   p_cons 9.763287e-02   p_joint 2.525952e-05

Joint ci ratio: 4.526367e-01	ci left: 2.003657e-05	ci right 3.203446e-05	k: 74	n:2900000
Cons ci ratio: 6.997948e-03	ci left: 9.729516e-02	ci right 9.797875e-02	k: 283146	n:2900000
KS ci ratio: 1.175833e-01	ci left: 3.605739e-04	ci right 4.059507e-04	k: 1110	n:2900000
TRIM28   2900000 perm   3965 sec   (731 perm/sec)   p_kst 3.827586e-04   p_cons 9.763655e-02   p_joint 2.551724e-05

Joint ci ratio: 4.526367e-01	ci left: 1.996772e-05	ci right 3.192437e-05	k: 74	n:2910000
Cons ci ratio: 6.985769e-03	ci left: 9.729939e-02	ci right 9.798182e-02	k: 284133	n:2910000
KS ci ratio: 1.174249e-01	ci left: 3.603354e-04	ci right 4.056169e-04	k: 1113	n:2910000
TRIM28   2910000 perm   3994 sec   (729 perm/sec)   p_kst 3.824742e-04   p_cons 9.764021e-02   p_joint 2.542955e-05

Joint ci ratio: 4.526367e-01	ci left: 1.989934e-05	ci right 3.181504e-05	k: 74	n:2920000
Cons ci ratio: 6.974480e-03	ci left: 9.728274e-02	ci right 9.796394e-02	k: 285059	n:2920000
KS ci ratio: 1.172147e-01	ci left: 3.604310e-04	ci right 4.056379e-04	k: 1117	n:2920000
TRIM28   2920000 perm   4019 sec   (727 perm/sec)   p_kst 3.825342e-04   p_cons 9.762295e-02   p_joint 2.534247e-05

Joint ci ratio: 4.526367e-01	ci left: 1.983142e-05	ci right 3.170646e-05	k: 74	n:2930000
Cons ci ratio: 6.963407e-03	ci left: 9.726212e-02	ci right 9.794209e-02	k: 285973	n:2930000
KS ci ratio: 1.171100e-01	ci left: 3.598635e-04	ci right 4.049560e-04	k: 1119	n:2930000
TRIM28   2930000 perm   4045 sec   (724 perm/sec)   p_kst 3.819113e-04   p_cons 9.760171e-02   p_joint 2.525597e-05

Joint ci ratio: 4.496490e-01	ci left: 2.006544e-05	ci right 3.197716e-05	k: 75	n:2940000
Cons ci ratio: 6.951192e-03	ci left: 9.727186e-02	ci right 9.795070e-02	k: 286976	n:2940000
KS ci ratio: 1.168494e-01	ci left: 3.602904e-04	ci right 4.053291e-04	k: 1124	n:2940000
TRIM28   2940000 perm   4071 sec   (722 perm/sec)   p_kst 3.823129e-04   p_cons 9.761088e-02   p_joint 2.551020e-05

Joint ci ratio: 4.496490e-01	ci left: 1.999743e-05	ci right 3.186876e-05	k: 75	n:2950000
Cons ci ratio: 6.939322e-03	ci left: 9.727443e-02	ci right 9.795212e-02	k: 287958	n:2950000
KS ci ratio: 1.168495e-01	ci left: 3.590691e-04	ci right 4.039551e-04	k: 1124	n:2950000
TRIM28   2950000 perm   4099 sec   (720 perm/sec)   p_kst 3.810169e-04   p_cons 9.761288e-02   p_joint 2.542373e-05

Joint ci ratio: 4.496490e-01	ci left: 1.992987e-05	ci right 3.176110e-05	k: 75	n:2960000
Cons ci ratio: 6.927539e-03	ci left: 9.727631e-02	ci right 9.795286e-02	k: 288938	n:2960000
KS ci ratio: 1.166423e-01	ci left: 3.591679e-04	ci right 4.039812e-04	k: 1128	n:2960000
TRIM28   2960000 perm   4123 sec   (718 perm/sec)   p_kst 3.810811e-04   p_cons 9.761419e-02   p_joint 2.533784e-05

Joint ci ratio: 4.496490e-01	ci left: 1.986276e-05	ci right 3.165416e-05	k: 75	n:2970000
Cons ci ratio: 6.916635e-03	ci left: 9.725733e-02	ci right 9.793268e-02	k: 289856	n:2970000
KS ci ratio: 1.163849e-01	ci left: 3.595930e-04	ci right 4.043535e-04	k: 1133	n:2970000
TRIM28   2970000 perm   4148 sec   (716 perm/sec)   p_kst 3.814815e-04   p_cons 9.759461e-02   p_joint 2.525253e-05

Joint ci ratio: 4.496490e-01	ci left: 1.979611e-05	ci right 3.154794e-05	k: 75	n:2980000
Cons ci ratio: 6.905204e-03	ci left: 9.725322e-02	ci right 9.792743e-02	k: 290818	n:2980000
KS ci ratio: 1.162312e-01	ci left: 3.593637e-04	ci right 4.040326e-04	k: 1136	n:2980000
TRIM28   2980000 perm   4173 sec   (714 perm/sec)   p_kst 3.812081e-04   p_cons 9.758993e-02   p_joint 2.516779e-05

Joint ci ratio: 4.496490e-01	ci left: 1.972990e-05	ci right 3.144242e-05	k: 75	n:2990000
Cons ci ratio: 6.893554e-03	ci left: 9.725616e-02	ci right 9.792924e-02	k: 291801	n:2990000
KS ci ratio: 1.160782e-01	ci left: 3.591360e-04	ci right 4.037138e-04	k: 1139	n:2990000
TRIM28   2990000 perm   4198 sec   (712 perm/sec)   p_kst 3.809365e-04   p_cons 9.759231e-02   p_joint 2.508361e-05

Joint ci ratio: 4.496491e-01	ci left: 1.966414e-05	ci right 3.133762e-05	k: 75	n:3000000
Cons ci ratio: 6.882732e-03	ci left: 9.723944e-02	ci right 9.791134e-02	k: 292725	n:3000000
KS ci ratio: 1.160274e-01	ci left: 3.582626e-04	ci right 4.027111e-04	k: 1140	n:3000000
TRIM28   3000000 perm   4224 sec   (710 perm/sec)   p_kst 3.800000e-04   p_cons 9.757500e-02   p_joint 2.500000e-05

Joint ci ratio: 4.496491e-01	ci left: 1.959881e-05	ci right 3.123351e-05	k: 75	n:3010000
Cons ci ratio: 6.870625e-03	ci left: 9.725699e-02	ci right 9.792783e-02	k: 293752	n:3010000
KS ci ratio: 1.159259e-01	ci left: 3.577175e-04	ci right 4.020569e-04	k: 1142	n:3010000
TRIM28   3010000 perm   4250 sec   (708 perm/sec)   p_kst 3.794020e-04   p_cons 9.759203e-02   p_joint 2.491694e-05

Joint ci ratio: 4.496491e-01	ci left: 1.953391e-05	ci right 3.113008e-05	k: 75	n:3020000
Cons ci ratio: 6.859342e-03	ci left: 9.725493e-02	ci right 9.792465e-02	k: 294720	n:3020000
KS ci ratio: 1.158246e-01	ci left: 3.571760e-04	ci right 4.014070e-04	k: 1144	n:3020000
TRIM28   3020000 perm   4277 sec   (706 perm/sec)   p_kst 3.788079e-04   p_cons 9.758940e-02   p_joint 2.483444e-05

Joint ci ratio: 4.496491e-01	ci left: 1.946944e-05	ci right 3.102734e-05	k: 75	n:3030000
Cons ci ratio: 6.848000e-03	ci left: 9.725585e-02	ci right 9.792446e-02	k: 295697	n:3030000
KS ci ratio: 1.157741e-01	ci left: 3.563177e-04	ci right 4.004219e-04	k: 1145	n:3030000
TRIM28   3030000 perm   4303 sec   (704 perm/sec)   p_kst 3.778878e-04   p_cons 9.758977e-02   p_joint 2.475248e-05

Joint ci ratio: 4.496491e-01	ci left: 1.940540e-05	ci right 3.092528e-05	k: 75	n:3040000
Cons ci ratio: 6.836152e-03	ci left: 9.727121e-02	ci right 9.793877e-02	k: 296718	n:3040000
KS ci ratio: 1.154722e-01	ci left: 3.570622e-04	ci right 4.011354e-04	k: 1151	n:3040000
TRIM28   3040000 perm   4328 sec   (702 perm/sec)   p_kst 3.786184e-04   p_cons 9.760461e-02   p_joint 2.467105e-05

Joint ci ratio: 4.496492e-01	ci left: 1.934177e-05	ci right 3.082389e-05	k: 75	n:3050000
Cons ci ratio: 6.824695e-03	ci left: 9.727796e-02	ci right 9.794444e-02	k: 297713	n:3050000
KS ci ratio: 1.154222e-01	ci left: 3.562099e-04	ci right 4.001576e-04	k: 1152	n:3050000
TRIM28   3050000 perm   4353 sec   (701 perm/sec)   p_kst 3.777049e-04   p_cons 9.761082e-02   p_joint 2.459016e-05

Joint ci ratio: 4.496492e-01	ci left: 1.927856e-05	ci right 3.072316e-05	k: 75	n:3060000
Cons ci ratio: 6.813574e-03	ci left: 9.727749e-02	ci right 9.794288e-02	k: 298686	n:3060000
KS ci ratio: 1.153222e-01	ci left: 3.556806e-04	ci right 3.995223e-04	k: 1154	n:3060000
TRIM28   3060000 perm   4378 sec   (699 perm/sec)   p_kst 3.771242e-04   p_cons 9.760980e-02   p_joint 2.450980e-05

Joint ci ratio: 4.496492e-01	ci left: 1.921577e-05	ci right 3.062308e-05	k: 75	n:3070000
Cons ci ratio: 6.802821e-03	ci left: 9.726889e-02	ci right 9.793317e-02	k: 299634	n:3070000
KS ci ratio: 1.152225e-01	ci left: 3.551547e-04	ci right 3.988912e-04	k: 1156	n:3070000
TRIM28   3070000 perm   4404 sec   (697 perm/sec)   p_kst 3.765472e-04   p_cons 9.760065e-02   p_joint 2.442997e-05

Joint ci ratio: 4.496492e-01	ci left: 1.915338e-05	ci right 3.052366e-05	k: 75	n:3080000
Cons ci ratio: 6.792482e-03	ci left: 9.725095e-02	ci right 9.791409e-02	k: 300553	n:3080000
KS ci ratio: 1.151728e-01	ci left: 3.543169e-04	ci right 3.979301e-04	k: 1157	n:3080000
TRIM28   3080000 perm   4430 sec   (695 perm/sec)   p_kst 3.756494e-04   p_cons 9.758214e-02   p_joint 2.435065e-05

Joint ci ratio: 4.496492e-01	ci left: 1.909139e-05	ci right 3.042487e-05	k: 75	n:3090000
Cons ci ratio: 6.782091e-03	ci left: 9.723571e-02	ci right 9.789773e-02	k: 301480	n:3090000
KS ci ratio: 1.150735e-01	ci left: 3.537988e-04	ci right 3.973082e-04	k: 1159	n:3090000
TRIM28   3090000 perm   4456 sec   (693 perm/sec)   p_kst 3.750809e-04   p_cons 9.756634e-02   p_joint 2.427184e-05

Joint ci ratio: 4.496493e-01	ci left: 1.902981e-05	ci right 3.032673e-05	k: 75	n:3100000
Cons ci ratio: 6.771139e-03	ci left: 9.723635e-02	ci right 9.789730e-02	k: 302456	n:3100000
KS ci ratio: 1.149250e-01	ci left: 3.535975e-04	ci right 3.970221e-04	k: 1162	n:3100000
TRIM28   3100000 perm   4481 sec   (692 perm/sec)   p_kst 3.748387e-04   p_cons 9.756645e-02   p_joint 2.419355e-05

Joint ci ratio: 4.496493e-01	ci left: 1.896862e-05	ci right 3.022922e-05	k: 75	n:3110000
Cons ci ratio: 6.760450e-03	ci left: 9.723153e-02	ci right 9.789140e-02	k: 303415	n:3110000
KS ci ratio: 1.148264e-01	ci left: 3.530851e-04	ci right 3.964071e-04	k: 1164	n:3110000
TRIM28   3110000 perm   4507 sec   (690 perm/sec)   p_kst 3.742765e-04   p_cons 9.756109e-02   p_joint 2.411576e-05

Joint ci ratio: 4.496493e-01	ci left: 1.890782e-05	ci right 3.013233e-05	k: 75	n:3120000
Cons ci ratio: 6.749959e-03	ci left: 9.722291e-02	ci right 9.788169e-02	k: 304362	n:3120000
KS ci ratio: 1.146788e-01	ci left: 3.528873e-04	ci right 3.961257e-04	k: 1167	n:3120000
TRIM28   3120000 perm   4532 sec   (688 perm/sec)   p_kst 3.740385e-04   p_cons 9.755192e-02   p_joint 2.403846e-05

Joint ci ratio: 4.496493e-01	ci left: 1.884741e-05	ci right 3.003606e-05	k: 75	n:3130000
Cons ci ratio: 6.739443e-03	ci left: 9.721625e-02	ci right 9.787395e-02	k: 305315	n:3130000
KS ci ratio: 1.144830e-01	ci left: 3.530012e-04	ci right 3.961747e-04	k: 1171	n:3130000
TRIM28   3130000 perm   4560 sec   (686 perm/sec)   p_kst 3.741214e-04   p_cons 9.754473e-02   p_joint 2.396166e-05

Joint ci ratio: 4.496493e-01	ci left: 1.878739e-05	ci right 2.994040e-05	k: 75	n:3140000
Cons ci ratio: 6.728404e-03	ci left: 9.722458e-02	ci right 9.788126e-02	k: 306315	n:3140000
KS ci ratio: 1.143854e-01	ci left: 3.524957e-04	ci right 3.955682e-04	k: 1173	n:3140000
TRIM28   3140000 perm   4586 sec   (685 perm/sec)   p_kst 3.735669e-04   p_cons 9.755255e-02   p_joint 2.388535e-05

Joint ci ratio: 4.496493e-01	ci left: 1.872775e-05	ci right 2.984535e-05	k: 75	n:3150000
Cons ci ratio: 6.717673e-03	ci left: 9.722620e-02	ci right 9.788184e-02	k: 307294	n:3150000
KS ci ratio: 1.141911e-01	ci left: 3.526102e-04	ci right 3.956185e-04	k: 1177	n:3150000
TRIM28   3150000 perm   4612 sec   (683 perm/sec)   p_kst 3.736508e-04   p_cons 9.755365e-02   p_joint 2.380952e-05

Joint ci ratio: 4.496494e-01	ci left: 1.866848e-05	ci right 2.975091e-05	k: 75	n:3160000
Cons ci ratio: 6.707295e-03	ci left: 9.721991e-02	ci right 9.787449e-02	k: 308248	n:3160000
KS ci ratio: 1.140460e-01	ci left: 3.524167e-04	ci right 3.953430e-04	k: 1180	n:3160000
TRIM28   3160000 perm   4638 sec   (681 perm/sec)   p_kst 3.734177e-04   p_cons 9.754684e-02   p_joint 2.373418e-05

Joint ci ratio: 4.496494e-01	ci left: 1.860959e-05	ci right 2.965706e-05	k: 75	n:3170000
Cons ci ratio: 6.696102e-03	ci left: 9.723635e-02	ci right 9.788994e-02	k: 309274	n:3170000
KS ci ratio: 1.139977e-01	ci left: 3.516114e-04	ci right 3.944203e-04	k: 1181	n:3170000
TRIM28   3170000 perm   4665 sec   (680 perm/sec)   p_kst 3.725552e-04   p_cons 9.756278e-02   p_joint 2.365931e-05

Joint ci ratio: 4.496494e-01	ci left: 1.855107e-05	ci right 2.956380e-05	k: 75	n:3180000
Cons ci ratio: 6.685393e-03	ci left: 9.724137e-02	ci right 9.789395e-02	k: 310264	n:3180000
KS ci ratio: 1.139496e-01	ci left: 3.508112e-04	ci right 3.935034e-04	k: 1182	n:3180000
TRIM28   3180000 perm   4691 sec   (678 perm/sec)   p_kst 3.716981e-04   p_cons 9.756730e-02   p_joint 2.358491e-05

Joint ci ratio: 4.496494e-01	ci left: 1.849291e-05	ci right 2.947112e-05	k: 75	n:3190000
Cons ci ratio: 6.674796e-03	ci left: 9.724480e-02	ci right 9.789637e-02	k: 311249	n:3190000
KS ci ratio: 1.139015e-01	ci left: 3.500160e-04	ci right 3.925923e-04	k: 1183	n:3190000
TRIM28   3190000 perm   4718 sec   (676 perm/sec)   p_kst 3.708464e-04   p_cons 9.757022e-02   p_joint 2.351097e-05

Joint ci ratio: 4.496494e-01	ci left: 1.843512e-05	ci right 2.937902e-05	k: 75	n:3200000
Cons ci ratio: 6.664579e-03	ci left: 9.723948e-02	ci right 9.789000e-02	k: 312206	n:3200000
KS ci ratio: 1.137575e-01	ci left: 3.498330e-04	ci right 3.923296e-04	k: 1186	n:3200000
TRIM28   3200000 perm   4744 sec   (675 perm/sec)   p_kst 3.706250e-04   p_cons 9.756437e-02   p_joint 2.343750e-05

Joint ci ratio: 4.496494e-01	ci left: 1.837769e-05	ci right 2.928750e-05	k: 75	n:3210000
Cons ci ratio: 6.654304e-03	ci left: 9.723698e-02	ci right 9.788649e-02	k: 313172	n:3210000
KS ci ratio: 1.136140e-01	ci left: 3.496512e-04	ci right 3.920686e-04	k: 1189	n:3210000
TRIM28   3210000 perm   4770 sec   (673 perm/sec)   p_kst 3.704050e-04   p_cons 9.756137e-02   p_joint 2.336449e-05

Joint ci ratio: 4.496495e-01	ci left: 1.832062e-05	ci right 2.919654e-05	k: 75	n:3220000
Cons ci ratio: 6.643994e-03	ci left: 9.723668e-02	ci right 9.788517e-02	k: 314145	n:3220000
KS ci ratio: 1.134236e-01	ci left: 3.497723e-04	ci right 3.921285e-04	k: 1193	n:3220000
TRIM28   3220000 perm   4796 sec   (671 perm/sec)   p_kst 3.704969e-04   p_cons 9.756056e-02   p_joint 2.329193e-05

Joint ci ratio: 4.496495e-01	ci left: 1.826390e-05	ci right 2.910615e-05	k: 75	n:3230000
Cons ci ratio: 6.633976e-03	ci left: 9.722988e-02	ci right 9.787734e-02	k: 315097	n:3230000
KS ci ratio: 1.133761e-01	ci left: 3.489902e-04	ci right 3.912328e-04	k: 1194	n:3230000
TRIM28   3230000 perm   4822 sec   (670 perm/sec)   p_kst 3.696594e-04   p_cons 9.755325e-02   p_joint 2.321981e-05

Joint ci ratio: 4.467201e-01	ci left: 1.848133e-05	ci right 2.935958e-05	k: 76	n:3240000
Cons ci ratio: 6.624085e-03	ci left: 9.722097e-02	ci right 9.786741e-02	k: 316042	n:3240000
KS ci ratio: 1.132814e-01	ci left: 3.485129e-04	ci right 3.906601e-04	k: 1196	n:3240000
TRIM28   3240000 perm   4847 sec   (668 perm/sec)   p_kst 3.691358e-04   p_cons 9.754383e-02   p_joint 2.345679e-05

Joint ci ratio: 4.467201e-01	ci left: 1.842446e-05	ci right 2.926925e-05	k: 76	n:3250000
Cons ci ratio: 6.613614e-03	ci left: 9.722870e-02	ci right 9.787417e-02	k: 317041	n:3250000
KS ci ratio: 1.129985e-01	ci left: 3.492344e-04	ci right 3.913564e-04	k: 1202	n:3250000
TRIM28   3250000 perm   4873 sec   (667 perm/sec)   p_kst 3.698462e-04   p_cons 9.755108e-02   p_joint 2.338462e-05

Joint ci ratio: 4.467201e-01	ci left: 1.836794e-05	ci right 2.917946e-05	k: 76	n:3260000
Cons ci ratio: 6.603733e-03	ci left: 9.722200e-02	ci right 9.786645e-02	k: 317993	n:3260000
KS ci ratio: 1.128579e-01	ci left: 3.490574e-04	ci right 3.911022e-04	k: 1205	n:3260000
TRIM28   3260000 perm   4901 sec   (665 perm/sec)   p_kst 3.696319e-04   p_cons 9.754387e-02   p_joint 2.331288e-05

Joint ci ratio: 4.467201e-01	ci left: 1.831177e-05	ci right 2.909023e-05	k: 76	n:3270000
Cons ci ratio: 6.593839e-03	ci left: 9.721686e-02	ci right 9.786031e-02	k: 318950	n:3270000
KS ci ratio: 1.125317e-01	ci left: 3.500703e-04	ci right 3.921071e-04	k: 1212	n:3270000
TRIM28   3270000 perm   4929 sec   (663 perm/sec)   p_kst 3.706422e-04   p_cons 9.753823e-02   p_joint 2.324159e-05

Joint ci ratio: 4.467201e-01	ci left: 1.825594e-05	ci right 2.900154e-05	k: 76	n:3280000
Cons ci ratio: 6.584560e-03	ci left: 9.719653e-02	ci right 9.783894e-02	k: 319857	n:3280000
KS ci ratio: 1.125318e-01	ci left: 3.490030e-04	ci right 3.909117e-04	k: 1212	n:3280000
TRIM28   3280000 perm   4956 sec   (662 perm/sec)   p_kst 3.695122e-04   p_cons 9.751738e-02   p_joint 2.317073e-05

Joint ci ratio: 4.438473e-01	ci left: 1.847032e-05	ci right 2.925122e-05	k: 77	n:3290000
Cons ci ratio: 6.574570e-03	ci left: 9.719636e-02	ci right 9.783778e-02	k: 320830	n:3290000
KS ci ratio: 1.123467e-01	ci left: 3.491238e-04	ci right 3.909735e-04	k: 1216	n:3290000
TRIM28   3290000 perm   4982 sec   (660 perm/sec)   p_kst 3.696049e-04   p_cons 9.751672e-02   p_joint 2.340426e-05

Joint ci ratio: 4.438473e-01	ci left: 1.841434e-05	ci right 2.916258e-05	k: 77	n:3300000
Cons ci ratio: 6.564750e-03	ci left: 9.719286e-02	ci right 9.783330e-02	k: 321792	n:3300000
KS ci ratio: 1.121625e-01	ci left: 3.492440e-04	ci right 3.910349e-04	k: 1220	n:3300000
TRIM28   3300000 perm   5012 sec   (658 perm/sec)   p_kst 3.696970e-04   p_cons 9.751273e-02   p_joint 2.333333e-05

Joint ci ratio: 4.438473e-01	ci left: 1.835871e-05	ci right 2.907447e-05	k: 77	n:3310000
Cons ci ratio: 6.555019e-03	ci left: 9.718818e-02	ci right 9.782763e-02	k: 322750	n:3310000
KS ci ratio: 1.119336e-01	ci left: 3.496571e-04	ci right 3.914064e-04	k: 1225	n:3310000
TRIM28   3310000 perm   5038 sec   (657 perm/sec)   p_kst 3.700906e-04   p_cons 9.750755e-02   p_joint 2.326284e-05

Joint ci ratio: 4.438473e-01	ci left: 1.830341e-05	ci right 2.898690e-05	k: 77	n:3320000
Cons ci ratio: 6.544524e-03	ci left: 9.720518e-02	ci right 9.784372e-02	k: 323780	n:3320000
KS ci ratio: 1.117514e-01	ci left: 3.497750e-04	ci right 3.914659e-04	k: 1229	n:3320000
TRIM28   3320000 perm   5065 sec   (655 perm/sec)   p_kst 3.701807e-04   p_cons 9.752410e-02   p_joint 2.319277e-05

Joint ci ratio: 4.438473e-01	ci left: 1.824845e-05	ci right 2.889985e-05	k: 77	n:3330000
Cons ci ratio: 6.534938e-03	ci left: 9.719899e-02	ci right 9.783655e-02	k: 324733	n:3330000
KS ci ratio: 1.117060e-01	ci left: 3.490165e-04	ci right 3.905991e-04	k: 1230	n:3330000
TRIM28   3330000 perm   5093 sec   (654 perm/sec)   p_kst 3.693694e-04   p_cons 9.751742e-02   p_joint 2.312312e-05

Joint ci ratio: 4.438473e-01	ci left: 1.819381e-05	ci right 2.881333e-05	k: 77	n:3340000
Cons ci ratio: 6.525294e-03	ci left: 9.719553e-02	ci right 9.783212e-02	k: 325695	n:3340000
KS ci ratio: 1.116607e-01	ci left: 3.482626e-04	ci right 3.897374e-04	k: 1231	n:3340000
TRIM28   3340000 perm   5120 sec   (652 perm/sec)   p_kst 3.685629e-04   p_cons 9.751347e-02   p_joint 2.305389e-05

Joint ci ratio: 4.438474e-01	ci left: 1.813950e-05	ci right 2.872732e-05	k: 77	n:3350000
Cons ci ratio: 6.515461e-03	ci left: 9.719834e-02	ci right 9.783399e-02	k: 326678	n:3350000
KS ci ratio: 1.115703e-01	ci left: 3.478034e-04	ci right 3.891877e-04	k: 1233	n:3350000
TRIM28   3350000 perm   5148 sec   (651 perm/sec)   p_kst 3.680597e-04   p_cons 9.751582e-02   p_joint 2.298507e-05

Joint ci ratio: 4.438474e-01	ci left: 1.808552e-05	ci right 2.864182e-05	k: 77	n:3360000
Cons ci ratio: 6.505848e-03	ci left: 9.719639e-02	ci right 9.783109e-02	k: 327645	n:3360000
KS ci ratio: 1.114349e-01	ci left: 3.476362e-04	ci right 3.889471e-04	k: 1236	n:3360000
TRIM28   3360000 perm   5175 sec   (649 perm/sec)   p_kst 3.678571e-04   p_cons 9.751339e-02   p_joint 2.291667e-05

Joint ci ratio: 4.438474e-01	ci left: 1.803185e-05	ci right 2.855683e-05	k: 77	n:3370000
Cons ci ratio: 6.496124e-03	ci left: 9.719860e-02	ci right 9.783236e-02	k: 328626	n:3370000
KS ci ratio: 1.113000e-01	ci left: 3.474700e-04	ci right 3.887080e-04	k: 1239	n:3370000
TRIM28   3370000 perm   5202 sec   (648 perm/sec)   p_kst 3.676558e-04   p_cons 9.751513e-02   p_joint 2.284866e-05

Joint ci ratio: 4.438474e-01	ci left: 1.797850e-05	ci right 2.847234e-05	k: 77	n:3380000
Cons ci ratio: 6.485909e-03	ci left: 9.721527e-02	ci right 9.784814e-02	k: 329656	n:3380000
KS ci ratio: 1.111656e-01	ci left: 3.473049e-04	ci right 3.884702e-04	k: 1242	n:3380000
TRIM28   3380000 perm   5230 sec   (646 perm/sec)   p_kst 3.674556e-04   p_cons 9.753136e-02   p_joint 2.278107e-05

Joint ci ratio: 4.438474e-01	ci left: 1.792547e-05	ci right 2.838835e-05	k: 77	n:3390000
Cons ci ratio: 6.476491e-03	ci left: 9.721152e-02	ci right 9.784344e-02	k: 330617	n:3390000
KS ci ratio: 1.111210e-01	ci left: 3.465672e-04	ci right 3.876275e-04	k: 1243	n:3390000
TRIM28   3390000 perm   5257 sec   (645 perm/sec)   p_kst 3.666667e-04   p_cons 9.752714e-02   p_joint 2.271386e-05

Joint ci ratio: 4.410293e-01	ci left: 1.813409e-05	ci right 2.863155e-05	k: 78	n:3400000
Cons ci ratio: 6.467298e-03	ci left: 9.720280e-02	ci right 9.783376e-02	k: 331561	n:3400000
KS ci ratio: 1.109873e-01	ci left: 3.464057e-04	ci right 3.873942e-04	k: 1246	n:3400000
TRIM28   3400000 perm   5285 sec   (643 perm/sec)   p_kst 3.664706e-04   p_cons 9.751794e-02   p_joint 2.294118e-05

Joint ci ratio: 4.410293e-01	ci left: 1.808091e-05	ci right 2.854758e-05	k: 78	n:3410000
Cons ci ratio: 6.457670e-03	ci left: 9.720702e-02	ci right 9.783707e-02	k: 332549	n:3410000
KS ci ratio: 1.106770e-01	ci left: 3.473857e-04	ci right 3.883678e-04	k: 1253	n:3410000
TRIM28   3410000 perm   5313 sec   (642 perm/sec)   p_kst 3.674487e-04   p_cons 9.752170e-02   p_joint 2.287390e-05

Joint ci ratio: 4.410293e-01	ci left: 1.802804e-05	ci right 2.846411e-05	k: 78	n:3420000
Cons ci ratio: 6.447635e-03	ci left: 9.722348e-02	ci right 9.785264e-02	k: 333579	n:3420000
KS ci ratio: 1.106771e-01	ci left: 3.463700e-04	ci right 3.872323e-04	k: 1253	n:3420000
TRIM28   3420000 perm   5341 sec   (640 perm/sec)   p_kst 3.663743e-04   p_cons 9.753772e-02   p_joint 2.280702e-05

Joint ci ratio: 4.410293e-01	ci left: 1.797548e-05	ci right 2.838112e-05	k: 78	n:3430000
Cons ci ratio: 6.438586e-03	ci left: 9.721422e-02	ci right 9.784244e-02	k: 334521	n:3430000
KS ci ratio: 1.105449e-01	ci left: 3.462106e-04	ci right 3.870021e-04	k: 1256	n:3430000
TRIM28   3430000 perm   5369 sec   (639 perm/sec)   p_kst 3.661808e-04   p_cons 9.752799e-02   p_joint 2.274052e-05

Joint ci ratio: 4.382642e-01	ci left: 1.818174e-05	ci right 2.862131e-05	k: 79	n:3440000
Cons ci ratio: 6.428873e-03	ci left: 9.722417e-02	ci right 9.785151e-02	k: 335529	n:3440000
KS ci ratio: 1.104132e-01	ci left: 3.460522e-04	ci right 3.867733e-04	k: 1259	n:3440000
TRIM28   3440000 perm   5398 sec   (637 perm/sec)   p_kst 3.659884e-04   p_cons 9.753750e-02   p_joint 2.296512e-05

Joint ci ratio: 4.382642e-01	ci left: 1.812904e-05	ci right 2.853835e-05	k: 79	n:3450000
Cons ci ratio: 6.419088e-03	ci left: 9.723725e-02	ci right 9.786371e-02	k: 336548	n:3450000
KS ci ratio: 1.103257e-01	ci left: 3.456128e-04	ci right 3.862480e-04	k: 1261	n:3450000
TRIM28   3450000 perm   5426 sec   (636 perm/sec)   p_kst 3.655072e-04   p_cons 9.755014e-02   p_joint 2.289855e-05

Joint ci ratio: 4.382642e-01	ci left: 1.807664e-05	ci right 2.845587e-05	k: 79	n:3460000
Cons ci ratio: 6.409611e-03	ci left: 9.724304e-02	ci right 9.786861e-02	k: 337542	n:3460000
KS ci ratio: 1.101949e-01	ci left: 3.454571e-04	ci right 3.860226e-04	k: 1264	n:3460000
TRIM28   3460000 perm   5454 sec   (634 perm/sec)   p_kst 3.653179e-04   p_cons 9.755549e-02   p_joint 2.283237e-05

Joint ci ratio: 4.355504e-01	ci left: 1.828103e-05	ci right 2.869356e-05	k: 80	n:3470000
Cons ci ratio: 6.400479e-03	ci left: 9.724046e-02	ci right 9.786512e-02	k: 338507	n:3470000
KS ci ratio: 1.101079e-01	ci left: 3.450220e-04	ci right 3.855024e-04	k: 1266	n:3470000
TRIM28   3470000 perm   5483 sec   (633 perm/sec)   p_kst 3.648415e-04   p_cons 9.755245e-02   p_joint 2.305476e-05

Joint ci ratio: 4.355504e-01	ci left: 1.822850e-05	ci right 2.861110e-05	k: 80	n:3480000
Cons ci ratio: 6.391344e-03	ci left: 9.723903e-02	ci right 9.786279e-02	k: 339476	n:3480000
KS ci ratio: 1.098912e-01	ci left: 3.454278e-04	ci right 3.858709e-04	k: 1271	n:3480000
TRIM28   3480000 perm   5511 sec   (631 perm/sec)   p_kst 3.652299e-04   p_cons 9.755057e-02   p_joint 2.298851e-05

Joint ci ratio: 4.355504e-01	ci left: 1.817627e-05	ci right 2.852912e-05	k: 80	n:3490000
Cons ci ratio: 6.382404e-03	ci left: 9.723332e-02	ci right 9.785617e-02	k: 340430	n:3490000
KS ci ratio: 1.096759e-01	ci left: 3.458314e-04	ci right 3.862372e-04	k: 1276	n:3490000
TRIM28   3490000 perm   5540 sec   (630 perm/sec)   p_kst 3.656160e-04   p_cons 9.754441e-02   p_joint 2.292264e-05

Joint ci ratio: 4.355505e-01	ci left: 1.812433e-05	ci right 2.844761e-05	k: 80	n:3500000
Cons ci ratio: 6.373099e-03	ci left: 9.723878e-02	ci right 9.786075e-02	k: 341423	n:3500000
KS ci ratio: 1.095045e-01	ci left: 3.459548e-04	ci right 3.863079e-04	k: 1280	n:3500000
TRIM28   3500000 perm   5568 sec   (629 perm/sec)   p_kst 3.657143e-04   p_cons 9.754943e-02   p_joint 2.285714e-05

Joint ci ratio: 4.328865e-01	ci left: 1.832645e-05	ci right 2.868243e-05	k: 81	n:3510000
Cons ci ratio: 6.364390e-03	ci left: 9.722884e-02	ci right 9.784989e-02	k: 342362	n:3510000
KS ci ratio: 1.092065e-01	ci left: 3.469090e-04	ci right 3.872561e-04	k: 1287	n:3510000
TRIM28   3510000 perm   5597 sec   (627 perm/sec)   p_kst 3.666667e-04   p_cons 9.753903e-02   p_joint 2.307692e-05

Joint ci ratio: 4.328865e-01	ci left: 1.827438e-05	ci right 2.860094e-05	k: 81	n:3520000
Cons ci ratio: 6.355983e-03	ci left: 9.721158e-02	ci right 9.783170e-02	k: 343275	n:3520000
KS ci ratio: 1.091218e-01	ci left: 3.464761e-04	ci right 3.867396e-04	k: 1289	n:3520000
TRIM28   3520000 perm   5626 sec   (626 perm/sec)   p_kst 3.661932e-04   p_cons 9.752131e-02   p_joint 2.301136e-05

Joint ci ratio: 4.328865e-01	ci left: 1.822262e-05	ci right 2.851992e-05	k: 81	n:3530000
Cons ci ratio: 6.347068e-03	ci left: 9.720941e-02	ci right 9.782864e-02	k: 344241	n:3530000
KS ci ratio: 1.091219e-01	ci left: 3.454946e-04	ci right 3.856441e-04	k: 1289	n:3530000
TRIM28   3530000 perm   5655 sec   (624 perm/sec)   p_kst 3.651558e-04   p_cons 9.751870e-02   p_joint 2.294618e-05

Joint ci ratio: 4.302708e-01	ci left: 1.842293e-05	ci right 2.875235e-05	k: 82	n:3540000
Cons ci ratio: 6.338363e-03	ci left: 9.720246e-02	ci right 9.782080e-02	k: 345190	n:3540000
KS ci ratio: 1.089110e-01	ci left: 3.458925e-04	ci right 3.860056e-04	k: 1294	n:3540000
TRIM28   3540000 perm   5684 sec   (623 perm/sec)   p_kst 3.655367e-04   p_cons 9.751130e-02   p_joint 2.316384e-05

Joint ci ratio: 4.277019e-01	ci left: 1.862231e-05	ci right 2.898330e-05	k: 83	n:3550000
Cons ci ratio: 6.330018e-03	ci left: 9.718655e-02	ci right 9.780397e-02	k: 346107	n:3550000
KS ci ratio: 1.086595e-01	ci left: 3.465623e-04	ci right 3.866544e-04	k: 1300	n:3550000
TRIM28   3550000 perm   5713 sec   (621 perm/sec)   p_kst 3.661972e-04   p_cons 9.749493e-02   p_joint 2.338028e-05

Joint ci ratio: 4.277020e-01	ci left: 1.857000e-05	ci right 2.890188e-05	k: 83	n:3560000
Cons ci ratio: 6.321272e-03	ci left: 9.718279e-02	ci right 9.779933e-02	k: 347067	n:3560000
KS ci ratio: 1.085761e-01	ci left: 3.461354e-04	ci right 3.861453e-04	k: 1302	n:3560000
TRIM28   3560000 perm   5742 sec   (620 perm/sec)   p_kst 3.657303e-04   p_cons 9.749073e-02   p_joint 2.331461e-05

Joint ci ratio: 4.251786e-01	ci left: 1.876802e-05	ci right 2.913093e-05	k: 84	n:3570000
Cons ci ratio: 6.312321e-03	ci left: 9.718576e-02	ci right 9.780144e-02	k: 348051	n:3570000
KS ci ratio: 1.084098e-01	ci left: 3.462559e-04	ci right 3.862145e-04	k: 1306	n:3570000
TRIM28   3570000 perm   5771 sec   (619 perm/sec)   p_kst 3.658263e-04   p_cons 9.749328e-02   p_joint 2.352941e-05

Joint ci ratio: 4.251786e-01	ci left: 1.871560e-05	ci right 2.904956e-05	k: 84	n:3580000
Cons ci ratio: 6.303439e-03	ci left: 9.718789e-02	ci right 9.780271e-02	k: 349032	n:3580000
KS ci ratio: 1.083270e-01	ci left: 3.458322e-04	ci right 3.857095e-04	k: 1308	n:3580000
TRIM28   3580000 perm   5800 sec   (617 perm/sec)   p_kst 3.653631e-04   p_cons 9.749497e-02   p_joint 2.346369e-05

Joint ci ratio: 4.251786e-01	ci left: 1.866346e-05	ci right 2.896864e-05	k: 84	n:3590000
Cons ci ratio: 6.294772e-03	ci left: 9.718499e-02	ci right 9.779895e-02	k: 349995	n:3590000
KS ci ratio: 1.082031e-01	ci left: 3.456819e-04	ci right 3.854934e-04	k: 1311	n:3590000
TRIM28   3590000 perm   5832 sec   (616 perm/sec)   p_kst 3.651811e-04   p_cons 9.749164e-02   p_joint 2.339833e-05

Joint ci ratio: 4.226994e-01	ci left: 1.885976e-05	ci right 2.919542e-05	k: 85	n:3600000
Cons ci ratio: 6.286162e-03	ci left: 9.718156e-02	ci right 9.779465e-02	k: 350956	n:3600000
KS ci ratio: 1.079975e-01	ci left: 3.460730e-04	ci right 3.858490e-04	k: 1316	n:3600000
TRIM28   3600000 perm   5862 sec   (614 perm/sec)   p_kst 3.655556e-04   p_cons 9.748778e-02   p_joint 2.361111e-05

Joint ci ratio: 4.178683e-01	ci left: 1.930293e-05	ci right 2.972684e-05	k: 87	n:3610000
Cons ci ratio: 6.277201e-03	ci left: 9.718893e-02	ci right 9.780119e-02	k: 351956	n:3610000
KS ci ratio: 1.077523e-01	ci left: 3.467315e-04	ci right 3.864870e-04	k: 1322	n:3610000
TRIM28   3610000 perm   5891 sec   (613 perm/sec)   p_kst 3.662050e-04   p_cons 9.749474e-02   p_joint 2.409972e-05

Joint ci ratio: 4.178683e-01	ci left: 1.924961e-05	ci right 2.964472e-05	k: 87	n:3620000
Cons ci ratio: 6.267924e-03	ci left: 9.720619e-02	ci right 9.781765e-02	k: 352992	n:3620000
KS ci ratio: 1.076710e-01	ci left: 3.463113e-04	ci right 3.859867e-04	k: 1324	n:3620000
TRIM28   3620000 perm   5921 sec   (611 perm/sec)   p_kst 3.657459e-04   p_cons 9.751160e-02   p_joint 2.403315e-05

Joint ci ratio: 4.178683e-01	ci left: 1.919658e-05	ci right 2.956305e-05	k: 87	n:3630000
Cons ci ratio: 6.259501e-03	ci left: 9.720053e-02	ci right 9.781113e-02	k: 353945	n:3630000
KS ci ratio: 1.074280e-01	ci left: 3.469657e-04	ci right 3.866207e-04	k: 1330	n:3630000
TRIM28   3630000 perm   5951 sec   (610 perm/sec)   p_kst 3.663912e-04   p_cons 9.750551e-02   p_joint 2.396694e-05

Joint ci ratio: 4.178683e-01	ci left: 1.914384e-05	ci right 2.948183e-05	k: 87	n:3640000
Cons ci ratio: 6.251054e-03	ci left: 9.719654e-02	ci right 9.780629e-02	k: 354904	n:3640000
KS ci ratio: 1.071465e-01	ci left: 3.478840e-04	ci right 3.875333e-04	k: 1337	n:3640000
TRIM28   3640000 perm   5981 sec   (609 perm/sec)   p_kst 3.673077e-04   p_cons 9.750110e-02   p_joint 2.390110e-05

Joint ci ratio: 4.178683e-01	ci left: 1.909139e-05	ci right 2.940106e-05	k: 87	n:3650000
Cons ci ratio: 6.242524e-03	ci left: 9.719586e-02	ci right 9.780477e-02	k: 355875	n:3650000
KS ci ratio: 1.070266e-01	ci left: 3.477308e-04	ci right 3.873154e-04	k: 1340	n:3650000
TRIM28   3650000 perm   6011 sec   (607 perm/sec)   p_kst 3.671233e-04   p_cons 9.750000e-02   p_joint 2.383562e-05

Joint ci ratio: 4.155141e-01	ci left: 1.928381e-05	ci right 2.962245e-05	k: 88	n:3660000
Cons ci ratio: 6.233835e-03	ci left: 9.720065e-02	ci right 9.780873e-02	k: 356866	n:3660000
KS ci ratio: 1.066692e-01	ci left: 3.491740e-04	ci right 3.887819e-04	k: 1349	n:3660000
TRIM28   3660000 perm   6041 sec   (606 perm/sec)   p_kst 3.685792e-04   p_cons 9.750437e-02   p_joint 2.404372e-05

Joint ci ratio: 4.155141e-01	ci left: 1.923126e-05	ci right 2.954173e-05	k: 88	n:3670000
Cons ci ratio: 6.225057e-03	ci left: 9.720894e-02	ci right 9.781622e-02	k: 357870	n:3670000
KS ci ratio: 1.065115e-01	ci left: 3.492835e-04	ci right 3.888415e-04	k: 1353	n:3670000
TRIM28   3670000 perm   6071 sec   (604 perm/sec)   p_kst 3.686649e-04   p_cons 9.751226e-02   p_joint 2.397820e-05

Joint ci ratio: 4.155141e-01	ci left: 1.917900e-05	ci right 2.946146e-05	k: 88	n:3680000
Cons ci ratio: 6.216288e-03	ci left: 9.721800e-02	ci right 9.782448e-02	k: 358877	n:3680000
KS ci ratio: 1.063545e-01	ci left: 3.493924e-04	ci right 3.889007e-04	k: 1357	n:3680000
TRIM28   3680000 perm   6101 sec   (603 perm/sec)   p_kst 3.687500e-04   p_cons 9.752092e-02   p_joint 2.391304e-05

Joint ci ratio: 4.155141e-01	ci left: 1.912703e-05	ci right 2.938162e-05	k: 88	n:3690000
Cons ci ratio: 6.207890e-03	ci left: 9.721754e-02	ci right 9.782320e-02	k: 359849	n:3690000
KS ci ratio: 1.062373e-01	ci left: 3.492369e-04	ci right 3.886814e-04	k: 1360	n:3690000
TRIM28   3690000 perm   6132 sec   (602 perm/sec)   p_kst 3.685637e-04   p_cons 9.752005e-02   p_joint 2.384824e-05

Joint ci ratio: 4.155141e-01	ci left: 1.907533e-05	ci right 2.930221e-05	k: 88	n:3700000
Cons ci ratio: 6.199563e-03	ci left: 9.721601e-02	ci right 9.782084e-02	k: 360817	n:3700000
KS ci ratio: 1.061204e-01	ci left: 3.490823e-04	ci right 3.884633e-04	k: 1363	n:3700000
TRIM28   3700000 perm   6162 sec   (600 perm/sec)   p_kst 3.683784e-04   p_cons 9.751811e-02   p_joint 2.378378e-05

Joint ci ratio: 4.155141e-01	ci left: 1.902392e-05	ci right 2.922322e-05	k: 88	n:3710000
Cons ci ratio: 6.191091e-03	ci left: 9.721960e-02	ci right 9.782362e-02	k: 361804	n:3710000
KS ci ratio: 1.060427e-01	ci left: 3.486661e-04	ci right 3.879696e-04	k: 1365	n:3710000
TRIM28   3710000 perm   6193 sec   (599 perm/sec)   p_kst 3.679245e-04   p_cons 9.752129e-02   p_joint 2.371968e-05

Joint ci ratio: 4.155141e-01	ci left: 1.897278e-05	ci right 2.914467e-05	k: 88	n:3720000
Cons ci ratio: 6.182747e-03	ci left: 9.722048e-02	ci right 9.782369e-02	k: 362781	n:3720000
KS ci ratio: 1.058491e-01	ci left: 3.490373e-04	ci right 3.883063e-04	k: 1370	n:3720000
TRIM28   3720000 perm   6223 sec   (598 perm/sec)   p_kst 3.682796e-04   p_cons 9.752177e-02   p_joint 2.365591e-05

Joint ci ratio: 4.155142e-01	ci left: 1.892191e-05	ci right 2.906653e-05	k: 88	n:3730000
Cons ci ratio: 6.174531e-03	ci left: 9.721869e-02	ci right 9.782108e-02	k: 363748	n:3730000
KS ci ratio: 1.057720e-01	ci left: 3.486236e-04	ci right 3.878157e-04	k: 1372	n:3730000
TRIM28   3730000 perm   6252 sec   (597 perm/sec)   p_kst 3.678284e-04   p_cons 9.751957e-02   p_joint 2.359249e-05

Joint ci ratio: 4.109226e-01	ci left: 1.935048e-05	ci right 2.957887e-05	k: 90	n:3740000
Cons ci ratio: 6.166291e-03	ci left: 9.721850e-02	ci right 9.782009e-02	k: 364721	n:3740000
KS ci ratio: 1.055416e-01	ci left: 3.492533e-04	ci right 3.884254e-04	k: 1378	n:3740000
TRIM28   3740000 perm   6281 sec   (595 perm/sec)   p_kst 3.684492e-04   p_cons 9.751898e-02   p_joint 2.406417e-05

Joint ci ratio: 4.109226e-01	ci left: 1.929888e-05	ci right 2.949999e-05	k: 90	n:3750000
Cons ci ratio: 6.158345e-03	ci left: 9.721086e-02	ci right 9.781163e-02	k: 365666	n:3750000
KS ci ratio: 1.053889e-01	ci left: 3.493605e-04	ci right 3.884844e-04	k: 1382	n:3750000
TRIM28   3750000 perm   6312 sec   (594 perm/sec)   p_kst 3.685333e-04   p_cons 9.751093e-02   p_joint 2.400000e-05

Joint ci ratio: 4.109226e-01	ci left: 1.924755e-05	ci right 2.942154e-05	k: 90	n:3760000
Cons ci ratio: 6.150366e-03	ci left: 9.720512e-02	ci right 9.780507e-02	k: 366618	n:3760000
KS ci ratio: 1.053128e-01	ci left: 3.489493e-04	ci right 3.879971e-04	k: 1384	n:3760000
TRIM28   3760000 perm   6341 sec   (593 perm/sec)   p_kst 3.680851e-04   p_cons 9.750479e-02   p_joint 2.393617e-05

Joint ci ratio: 4.109226e-01	ci left: 1.919650e-05	ci right 2.934350e-05	k: 90	n:3770000
Cons ci ratio: 6.142065e-03	ci left: 9.720948e-02	ci right 9.780864e-02	k: 367608	n:3770000
KS ci ratio: 1.051610e-01	ci left: 3.490568e-04	ci right 3.880569e-04	k: 1388	n:3770000
TRIM28   3770000 perm   6371 sec   (592 perm/sec)   p_kst 3.681698e-04   p_cons 9.750875e-02   p_joint 2.387268e-05

Joint ci ratio: 4.109227e-01	ci left: 1.914571e-05	ci right 2.926587e-05	k: 90	n:3780000
Cons ci ratio: 6.134157e-03	ci left: 9.720351e-02	ci right 9.780186e-02	k: 368559	n:3780000
KS ci ratio: 1.050854e-01	ci left: 3.486485e-04	ci right 3.875733e-04	k: 1390	n:3780000
TRIM28   3780000 perm   6400 sec   (591 perm/sec)   p_kst 3.677249e-04   p_cons 9.750238e-02   p_joint 2.380952e-05

Joint ci ratio: 4.109227e-01	ci left: 1.909519e-05	ci right 2.918865e-05	k: 90	n:3790000
Cons ci ratio: 6.126041e-03	ci left: 9.720443e-02	ci right 9.780199e-02	k: 369536	n:3790000
KS ci ratio: 1.049723e-01	ci left: 3.484994e-04	ci right 3.873630e-04	k: 1393	n:3790000
TRIM28   3790000 perm   6430 sec   (589 perm/sec)   p_kst 3.675462e-04   p_cons 9.750290e-02   p_joint 2.374670e-05

Joint ci ratio: 4.086833e-01	ci left: 1.928097e-05	ci right 2.940198e-05	k: 91	n:3800000
Cons ci ratio: 6.118122e-03	ci left: 9.720061e-02	ci right 9.779737e-02	k: 370495	n:3800000
KS ci ratio: 1.047471e-01	ci left: 3.491198e-04	ci right 3.879640e-04	k: 1399	n:3800000
TRIM28   3800000 perm   6460 sec   (588 perm/sec)   p_kst 3.681579e-04   p_cons 9.749868e-02   p_joint 2.394737e-05

Joint ci ratio: 4.086833e-01	ci left: 1.923036e-05	ci right 2.932481e-05	k: 91	n:3810000
Cons ci ratio: 6.110361e-03	ci left: 9.719314e-02	ci right 9.778910e-02	k: 371440	n:3810000
KS ci ratio: 1.047471e-01	ci left: 3.482035e-04	ci right 3.869457e-04	k: 1399	n:3810000
TRIM28   3810000 perm   6490 sec   (587 perm/sec)   p_kst 3.671916e-04   p_cons 9.749081e-02   p_joint 2.388451e-05

Joint ci ratio: 4.086833e-01	ci left: 1.918002e-05	ci right 2.924804e-05	k: 91	n:3820000
Cons ci ratio: 6.102366e-03	ci left: 9.719329e-02	ci right 9.778847e-02	k: 372414	n:3820000
KS ci ratio: 1.044491e-01	ci left: 3.493314e-04	ci right 3.880817e-04	k: 1407	n:3820000
TRIM28   3820000 perm   6520 sec   (586 perm/sec)   p_kst 3.683246e-04   p_cons 9.749058e-02   p_joint 2.382199e-05

Joint ci ratio: 4.086833e-01	ci left: 1.912994e-05	ci right 2.917168e-05	k: 91	n:3830000
Cons ci ratio: 6.094312e-03	ci left: 9.719605e-02	ci right 9.779046e-02	k: 373398	n:3830000
KS ci ratio: 1.043750e-01	ci left: 3.489279e-04	ci right 3.876043e-04	k: 1409	n:3830000
TRIM28   3830000 perm   6551 sec   (585 perm/sec)   p_kst 3.678851e-04   p_cons 9.749295e-02   p_joint 2.375979e-05

Joint ci ratio: 4.086833e-01	ci left: 1.908013e-05	ci right 2.909571e-05	k: 91	n:3840000
Cons ci ratio: 6.086407e-03	ci left: 9.719542e-02	ci right 9.778904e-02	k: 374369	n:3840000
KS ci ratio: 1.043380e-01	ci left: 3.482728e-04	ci right 3.868621e-04	k: 1410	n:3840000
TRIM28   3840000 perm   6583 sec   (583 perm/sec)   p_kst 3.671875e-04   p_cons 9.749193e-02   p_joint 2.369792e-05

Joint ci ratio: 4.086833e-01	ci left: 1.903057e-05	ci right 2.902014e-05	k: 91	n:3850000
Cons ci ratio: 6.078676e-03	ci left: 9.719064e-02	ci right 9.778348e-02	k: 375324	n:3850000
KS ci ratio: 1.042642e-01	ci left: 3.478741e-04	ci right 3.863903e-04	k: 1412	n:3850000
TRIM28   3850000 perm   6615 sec   (582 perm/sec)   p_kst 3.667532e-04   p_cons 9.748675e-02   p_joint 2.363636e-05

Joint ci ratio: 4.086833e-01	ci left: 1.898126e-05	ci right 2.894496e-05	k: 91	n:3860000
Cons ci ratio: 6.070635e-03	ci left: 9.719571e-02	ci right 9.778779e-02	k: 376317	n:3860000
KS ci ratio: 1.042274e-01	ci left: 3.472252e-04	ci right 3.856551e-04	k: 1413	n:3860000
TRIM28   3860000 perm   6646 sec   (581 perm/sec)   p_kst 3.660622e-04   p_cons 9.749145e-02   p_joint 2.357513e-05

Joint ci ratio: 4.086833e-01	ci left: 1.893222e-05	ci right 2.887016e-05	k: 91	n:3870000
Cons ci ratio: 6.062768e-03	ci left: 9.719663e-02	ci right 9.778795e-02	k: 377294	n:3870000
KS ci ratio: 1.041906e-01	ci left: 3.465796e-04	ci right 3.849238e-04	k: 1414	n:3870000
TRIM28   3870000 perm   6677 sec   (580 perm/sec)   p_kst 3.653747e-04   p_cons 9.749199e-02   p_joint 2.351421e-05

Joint ci ratio: 2.421702e-01	ci left: 5.935418e-05	ci right 7.594324e-05	k: 261	n:3880000
Cons ci ratio: 6.054826e-03	ci left: 9.720064e-02	ci right 9.779120e-02	k: 378283	n:3880000
KS ci ratio: 1.039338e-01	ci left: 3.474436e-04	ci right 3.857827e-04	k: 1421	n:3880000
TRIM28   3880000 perm   6709 sec   (578 perm/sec)   p_kst 3.662371e-04   p_cons 9.749562e-02   p_joint 6.726804e-05

Joint ci ratio: 2.421702e-01	ci left: 5.920160e-05	ci right 7.574802e-05	k: 261	n:3890000
Cons ci ratio: 6.047082e-03	ci left: 9.719974e-02	ci right 9.778955e-02	k: 379253	n:3890000
KS ci ratio: 1.037151e-01	ci left: 3.480528e-04	ci right 3.863735e-04	k: 1427	n:3890000
TRIM28   3890000 perm   6741 sec   (577 perm/sec)   p_kst 3.668380e-04   p_cons 9.749434e-02   p_joint 6.709512e-05

Joint ci ratio: 2.421702e-01	ci left: 5.904980e-05	ci right 7.555379e-05	k: 261	n:3900000
Cons ci ratio: 6.039051e-03	ci left: 9.720807e-02	ci right 9.779714e-02	k: 380259	n:3900000
KS ci ratio: 1.035340e-01	ci left: 3.484092e-04	ci right 3.866980e-04	k: 1432	n:3900000
TRIM28   3900000 perm   6773 sec   (576 perm/sec)   p_kst 3.671795e-04   p_cons 9.750231e-02   p_joint 6.692308e-05

Joint ci ratio: 2.421703e-01	ci left: 5.889878e-05	ci right 7.536056e-05	k: 261	n:3910000
Cons ci ratio: 6.030982e-03	ci left: 9.721840e-02	ci right 9.780674e-02	k: 381273	n:3910000
KS ci ratio: 1.035341e-01	ci left: 3.475181e-04	ci right 3.857090e-04	k: 1432	n:3910000
TRIM28   3910000 perm   6805 sec   (575 perm/sec)   p_kst 3.662404e-04   p_cons 9.751228e-02   p_joint 6.675192e-05

Joint ci ratio: 2.421703e-01	ci left: 5.874852e-05	ci right 7.516832e-05	k: 261	n:3920000
Cons ci ratio: 6.023469e-03	ci left: 9.721340e-02	ci right 9.780097e-02	k: 382227	n:3920000
KS ci ratio: 1.034619e-01	ci left: 3.471285e-04	ci right 3.852485e-04	k: 1434	n:3920000
TRIM28   3920000 perm   6837 sec   (573 perm/sec)   p_kst 3.658163e-04   p_cons 9.750689e-02   p_joint 6.658163e-05

Joint ci ratio: 2.421703e-01	ci left: 5.859904e-05	ci right 7.497705e-05	k: 261	n:3930000
Cons ci ratio: 6.015810e-03	ci left: 9.721350e-02	ci right 9.780033e-02	k: 383201	n:3930000
KS ci ratio: 1.033899e-01	ci left: 3.467410e-04	ci right 3.847903e-04	k: 1436	n:3930000
TRIM28   3930000 perm   6869 sec   (572 perm/sec)   p_kst 3.653944e-04   p_cons 9.750662e-02   p_joint 6.641221e-05

Joint ci ratio: 2.412512e-01	ci left: 5.892718e-05	ci right 7.532505e-05	k: 263	n:3940000
Cons ci ratio: 6.008345e-03	ci left: 9.720879e-02	ci right 9.779485e-02	k: 384156	n:3940000
KS ci ratio: 1.031747e-01	ci left: 3.473445e-04	ci right 3.853758e-04	k: 1442	n:3940000
TRIM28   3940000 perm   6901 sec   (571 perm/sec)   p_kst 3.659898e-04   p_cons 9.750152e-02   p_joint 6.675127e-05

Joint ci ratio: 2.403425e-01	ci left: 5.925378e-05	ci right 7.567117e-05	k: 265	n:3950000
Cons ci ratio: 6.000812e-03	ci left: 9.720688e-02	ci right 9.779219e-02	k: 385122	n:3950000
KS ci ratio: 1.030676e-01	ci left: 3.472050e-04	ci right 3.851793e-04	k: 1445	n:3950000
TRIM28   3950000 perm   6932 sec   (570 perm/sec)   p_kst 3.658228e-04   p_cons 9.749924e-02   p_joint 6.708861e-05

Joint ci ratio: 2.389985e-01	ci left: 5.981624e-05	ci right 7.628306e-05	k: 268	n:3960000
Cons ci ratio: 5.993119e-03	ci left: 9.721053e-02	ci right 9.779511e-02	k: 386110	n:3960000
KS ci ratio: 1.029254e-01	ci left: 3.473123e-04	ci right 3.852427e-04	k: 1449	n:3960000
TRIM28   3960000 perm   6965 sec   (569 perm/sec)   p_kst 3.659091e-04   p_cons 9.750253e-02   p_joint 6.767677e-05

Joint ci ratio: 2.389985e-01	ci left: 5.966557e-05	ci right 7.609091e-05	k: 268	n:3970000
Cons ci ratio: 5.985558e-03	ci left: 9.721114e-02	ci right 9.779499e-02	k: 387086	n:3970000
KS ci ratio: 1.028899e-01	ci left: 3.466829e-04	ci right 3.845307e-04	k: 1450	n:3970000
TRIM28   3970000 perm   6997 sec   (567 perm/sec)   p_kst 3.652393e-04   p_cons 9.750277e-02   p_joint 6.750630e-05

Joint ci ratio: 2.389985e-01	ci left: 5.951565e-05	ci right 7.589973e-05	k: 268	n:3980000
Cons ci ratio: 5.978332e-03	ci left: 9.720272e-02	ci right 9.778581e-02	k: 388026	n:3980000
KS ci ratio: 1.028545e-01	ci left: 3.460566e-04	ci right 3.838222e-04	k: 1451	n:3980000
TRIM28   3980000 perm   7030 sec   (566 perm/sec)   p_kst 3.645729e-04   p_cons 9.749397e-02   p_joint 6.733668e-05

Joint ci ratio: 2.389985e-01	ci left: 5.936649e-05	ci right 7.570951e-05	k: 268	n:3990000
Cons ci ratio: 5.970521e-03	ci left: 9.721236e-02	ci right 9.779474e-02	k: 389038	n:3990000
KS ci ratio: 1.027485e-01	ci left: 3.459218e-04	ci right 3.836315e-04	k: 1454	n:3990000
TRIM28   3990000 perm   7062 sec   (565 perm/sec)   p_kst 3.644110e-04   p_cons 9.750326e-02   p_joint 6.716792e-05

Joint ci ratio: 2.385555e-01	ci left: 5.945312e-05	ci right 7.578516e-05	k: 269	n:4000000
Cons ci ratio: 5.963274e-03	ci left: 9.720622e-02	ci right 9.778786e-02	k: 389987	n:4000000
KS ci ratio: 1.026427e-01	ci left: 3.457878e-04	ci right 3.834417e-04	k: 1457	n:4000000
TRIM28   4000000 perm   7094 sec   (564 perm/sec)   p_kst 3.642500e-04   p_cons 9.749675e-02   p_joint 6.725000e-05

Joint ci ratio: 2.381150e-01	ci left: 5.953934e-05	ci right 7.586041e-05	k: 270	n:4010000
Cons ci ratio: 5.956196e-03	ci left: 9.719588e-02	ci right 9.777677e-02	k: 390919	n:4010000
KS ci ratio: 1.025724e-01	ci left: 3.454114e-04	ci right 3.829970e-04	k: 1459	n:4010000
TRIM28   4010000 perm   7126 sec   (563 perm/sec)   p_kst 3.638404e-04   p_cons 9.748603e-02   p_joint 6.733167e-05

Joint ci ratio: 2.372411e-01	ci left: 5.985912e-05	ci right 7.619878e-05	k: 272	n:4020000
Cons ci ratio: 5.948690e-03	ci left: 9.719901e-02	ci right 9.777918e-02	k: 391905	n:4020000
KS ci ratio: 1.024672e-01	ci left: 3.452793e-04	ci right 3.828097e-04	k: 1462	n:4020000
TRIM28   4020000 perm   7159 sec   (561 perm/sec)   p_kst 3.636816e-04   p_cons 9.748881e-02   p_joint 6.766169e-05

Joint ci ratio: 2.368078e-01	ci left: 5.994399e-05	ci right 7.627255e-05	k: 273	n:4030000
Cons ci ratio: 5.941630e-03	ci left: 9.718973e-02	ci right 9.776916e-02	k: 392841	n:4030000
KS ci ratio: 1.022577e-01	ci left: 3.458733e-04	ci right 3.833867e-04	k: 1468	n:4030000
TRIM28   4030000 perm   7192 sec   (560 perm/sec)   p_kst 3.642680e-04   p_cons 9.747916e-02   p_joint 6.774194e-05

Joint ci ratio: 2.363768e-01	ci left: 6.002847e-05	ci right 7.634593e-05	k: 274	n:4040000
Cons ci ratio: 5.934847e-03	ci left: 9.717309e-02	ci right 9.775175e-02	k: 393747	n:4040000
KS ci ratio: 1.021882e-01	ci left: 3.454995e-04	ci right 3.829454e-04	k: 1470	n:4040000
TRIM28   4040000 perm   7224 sec   (559 perm/sec)   p_kst 3.638614e-04   p_cons 9.746213e-02   p_joint 6.782178e-05

Joint ci ratio: 2.359482e-01	ci left: 6.011256e-05	ci right 7.641892e-05	k: 275	n:4050000
Cons ci ratio: 5.927529e-03	ci left: 9.717304e-02	ci right 9.775099e-02	k: 394720	n:4050000
KS ci ratio: 1.020841e-01	ci left: 3.453683e-04	ci right 3.827596e-04	k: 1473	n:4050000
TRIM28   4050000 perm   7257 sec   (558 perm/sec)   p_kst 3.637037e-04   p_cons 9.746173e-02   p_joint 6.790123e-05

Joint ci ratio: 2.355219e-01	ci left: 6.019626e-05	ci right 7.649152e-05	k: 276	n:4060000
Cons ci ratio: 5.920287e-03	ci left: 9.717153e-02	ci right 9.774875e-02	k: 395687	n:4060000
KS ci ratio: 1.018770e-01	ci left: 3.459577e-04	ci right 3.833323e-04	k: 1479	n:4060000
TRIM28   4060000 perm   7290 sec   (557 perm/sec)   p_kst 3.642857e-04   p_cons 9.745985e-02   p_joint 6.798030e-05

Joint ci ratio: 2.346762e-01	ci left: 6.051081e-05	ci right 7.682387e-05	k: 278	n:4070000
Cons ci ratio: 5.912808e-03	ci left: 9.717787e-02	ci right 9.775440e-02	k: 396686	n:4070000
KS ci ratio: 1.018082e-01	ci left: 3.455866e-04	ci right 3.828944e-04	k: 1481	n:4070000
TRIM28   4070000 perm   7323 sec   (556 perm/sec)   p_kst 3.638821e-04   p_cons 9.746585e-02   p_joint 6.830467e-05

Joint ci ratio: 2.338395e-01	ci left: 6.082393e-05	ci right 7.715449e-05	k: 280	n:4080000
Cons ci ratio: 5.905942e-03	ci left: 9.716680e-02	ci right 9.774260e-02	k: 397614	n:4080000
KS ci ratio: 1.014664e-01	ci left: 3.471283e-04	ci right 3.844691e-04	k: 1491	n:4080000
TRIM28   4080000 perm   7356 sec   (555 perm/sec)   p_kst 3.654412e-04   p_cons 9.745441e-02   p_joint 6.862745e-05

Joint ci ratio: 2.338395e-01	ci left: 6.067522e-05	ci right 7.696584e-05	k: 280	n:4090000
Cons ci ratio: 5.898238e-03	ci left: 9.718142e-02	ci right 9.775655e-02	k: 398647	n:4090000
KS ci ratio: 1.013985e-01	ci left: 3.467561e-04	ci right 3.840305e-04	k: 1493	n:4090000
TRIM28   4090000 perm   7389 sec   (554 perm/sec)   p_kst 3.650367e-04   p_cons 9.746870e-02   p_joint 6.845966e-05

Joint ci ratio: 2.338396e-01	ci left: 6.052723e-05	ci right 7.677812e-05	k: 280	n:4100000
Cons ci ratio: 5.891112e-03	ci left: 9.717966e-02	ci right 9.775408e-02	k: 399613	n:4100000
KS ci ratio: 1.012630e-01	ci left: 3.468613e-04	ci right 3.840942e-04	k: 1497	n:4100000
TRIM28   4100000 perm   7422 sec   (552 perm/sec)   p_kst 3.651220e-04   p_cons 9.746659e-02   p_joint 6.829268e-05

Joint ci ratio: 2.334246e-01	ci left: 6.060903e-05	ci right 7.684884e-05	k: 281	n:4110000
Cons ci ratio: 5.883694e-03	ci left: 9.718738e-02	ci right 9.776112e-02	k: 400618	n:4110000
KS ci ratio: 1.011955e-01	ci left: 3.464916e-04	ci right 3.836586e-04	k: 1499	n:4110000
TRIM28   4110000 perm   7455 sec   (551 perm/sec)   p_kst 3.647202e-04   p_cons 9.747397e-02   p_joint 6.836983e-05

Joint ci ratio: 2.326012e-01	ci left: 6.091902e-05	ci right 7.717604e-05	k: 283	n:4120000
Cons ci ratio: 5.876474e-03	ci left: 9.718997e-02	ci right 9.776302e-02	k: 401602	n:4120000
KS ci ratio: 1.009601e-01	ci left: 3.473067e-04	ci right 3.844693e-04	k: 1506	n:4120000
TRIM28   4120000 perm   7489 sec   (550 perm/sec)   p_kst 3.655340e-04   p_cons 9.747621e-02   p_joint 6.868932e-05

Joint ci ratio: 2.321927e-01	ci left: 6.099955e-05	ci right 7.724537e-05	k: 284	n:4130000
Cons ci ratio: 5.869257e-03	ci left: 9.719328e-02	ci right 9.776564e-02	k: 402589	n:4130000
KS ci ratio: 1.007931e-01	ci left: 3.476459e-04	ci right 3.847796e-04	k: 1511	n:4130000
TRIM28   4130000 perm   7523 sec   (549 perm/sec)   p_kst 3.658596e-04   p_cons 9.747918e-02   p_joint 6.876513e-05

Joint ci ratio: 2.317864e-01	ci left: 6.107972e-05	ci right 7.731435e-05	k: 285	n:4140000
Cons ci ratio: 5.862154e-03	ci left: 9.719391e-02	ci right 9.776559e-02	k: 403565	n:4140000
KS ci ratio: 1.007598e-01	ci left: 3.470416e-04	ci right 3.840978e-04	k: 1512	n:4140000
TRIM28   4140000 perm   7556 sec   (548 perm/sec)   p_kst 3.652174e-04   p_cons 9.747947e-02   p_joint 6.884058e-05

Joint ci ratio: 2.313823e-01	ci left: 6.115953e-05	ci right 7.738297e-05	k: 286	n:4150000
Cons ci ratio: 5.855454e-03	ci left: 9.718324e-02	ci right 9.775419e-02	k: 404494	n:4150000
KS ci ratio: 1.006933e-01	ci left: 3.466752e-04	ci right 3.836664e-04	k: 1514	n:4150000
TRIM28   4150000 perm   7589 sec   (547 perm/sec)   p_kst 3.648193e-04   p_cons 9.746843e-02   p_joint 6.891566e-05

Joint ci ratio: 2.313823e-01	ci left: 6.101251e-05	ci right 7.719695e-05	k: 286	n:4160000
Cons ci ratio: 5.848538e-03	ci left: 9.717982e-02	ci right 9.775007e-02	k: 405453	n:4160000
KS ci ratio: 1.006601e-01	ci left: 3.460761e-04	ci right 3.829905e-04	k: 1515	n:4160000
TRIM28   4160000 perm   7623 sec   (546 perm/sec)   p_kst 3.641827e-04   p_cons 9.746466e-02   p_joint 6.875000e-05

Joint ci ratio: 2.313823e-01	ci left: 6.086619e-05	ci right 7.701183e-05	k: 286	n:4170000
Cons ci ratio: 5.841327e-03	ci left: 9.718599e-02	ci right 9.775558e-02	k: 406452	n:4170000
KS ci ratio: 1.005275e-01	ci left: 3.461813e-04	ci right 3.830554e-04	k: 1519	n:4170000
TRIM28   4170000 perm   7657 sec   (545 perm/sec)   p_kst 3.642686e-04   p_cons 9.747050e-02   p_joint 6.858513e-05

Joint ci ratio: 2.309802e-01	ci left: 6.094596e-05	ci right 7.708065e-05	k: 287	n:4180000
Cons ci ratio: 5.834055e-03	ci left: 9.719476e-02	ci right 9.776369e-02	k: 407462	n:4180000
KS ci ratio: 1.003626e-01	ci left: 3.465193e-04	ci right 3.833652e-04	k: 1524	n:4180000
TRIM28   4180000 perm   7691 sec   (544 perm/sec)   p_kst 3.645933e-04   p_cons 9.747895e-02   p_joint 6.866029e-05

Joint ci ratio: 2.309802e-01	ci left: 6.080050e-05	ci right 7.689669e-05	k: 287	n:4190000
Cons ci ratio: 5.827214e-03	ci left: 9.719134e-02	ci right 9.775958e-02	k: 408421	n:4190000
KS ci ratio: 1.002640e-01	ci left: 3.463903e-04	ci right 3.831842e-04	k: 1527	n:4190000
TRIM28   4190000 perm   7724 sec   (542 perm/sec)   p_kst 3.644391e-04   p_cons 9.747518e-02   p_joint 6.849642e-05

Joint ci ratio: 2.305803e-01	ci left: 6.088007e-05	ci right 7.696544e-05	k: 288	n:4200000
Cons ci ratio: 5.820200e-03	ci left: 9.719388e-02	ci right 9.776144e-02	k: 409405	n:4200000
KS ci ratio: 1.001985e-01	ci left: 3.460298e-04	ci right 3.827600e-04	k: 1529	n:4200000
TRIM28   4200000 perm   7759 sec   (541 perm/sec)   p_kst 3.640476e-04   p_cons 9.747738e-02   p_joint 6.857143e-05

Joint ci ratio: 2.301824e-01	ci left: 6.095929e-05	ci right 7.703384e-05	k: 289	n:4210000
Cons ci ratio: 5.813376e-03	ci left: 9.719142e-02	ci right 9.775830e-02	k: 410368	n:4210000
KS ci ratio: 1.001004e-01	ci left: 3.459026e-04	ci right 3.825813e-04	k: 1532	n:4210000
TRIM28   4210000 perm   7793 sec   (540 perm/sec)   p_kst 3.638955e-04   p_cons 9.747458e-02   p_joint 6.864608e-05

Joint ci ratio: 2.293927e-01	ci left: 6.126149e-05	ci right 7.735246e-05	k: 291	n:4220000
Cons ci ratio: 5.806412e-03	ci left: 9.719394e-02	ci right 9.776016e-02	k: 411352	n:4220000
KS ci ratio: 9.997007e-02	ci left: 3.460071e-04	ci right 3.826463e-04	k: 1536	n:4220000
TRIM28   4220000 perm   7828 sec   (539 perm/sec)   p_kst 3.639810e-04   p_cons 9.747678e-02   p_joint 6.895735e-05

Joint ci ratio: 2.286111e-01	ci left: 6.156235e-05	ci right 7.766948e-05	k: 293	n:4230000
Cons ci ratio: 5.799465e-03	ci left: 9.719669e-02	ci right 9.776225e-02	k: 412337	n:4230000
KS ci ratio: 9.974315e-02	ci left: 3.468026e-04	ci right 3.834378e-04	k: 1543	n:4230000
TRIM28   4230000 perm   7863 sec   (538 perm/sec)   p_kst 3.647754e-04   p_cons 9.747920e-02   p_joint 6.926714e-05

Joint ci ratio: 2.278374e-01	ci left: 6.186189e-05	ci right 7.798491e-05	k: 295	n:4240000
Cons ci ratio: 5.793016e-03	ci left: 9.718506e-02	ci right 9.774992e-02	k: 413261	n:4240000
KS ci ratio: 9.961420e-02	ci left: 3.469046e-04	ci right 3.835004e-04	k: 1547	n:4240000
TRIM28   4240000 perm   7897 sec   (537 perm/sec)   p_kst 3.648585e-04   p_cons 9.746722e-02   p_joint 6.957547e-05

Joint ci ratio: 2.270715e-01	ci left: 6.216011e-05	ci right 7.829877e-05	k: 297	n:4250000
Cons ci ratio: 5.786179e-03	ci left: 9.718594e-02	ci right 9.775013e-02	k: 414238	n:4250000
KS ci ratio: 9.948574e-02	ci left: 3.470061e-04	ci right 3.835626e-04	k: 1551	n:4250000
TRIM28   4250000 perm   7931 sec   (536 perm/sec)   p_kst 3.649412e-04   p_cons 9.746776e-02   p_joint 6.988235e-05

Joint ci ratio: 2.270715e-01	ci left: 6.201420e-05	ci right 7.811498e-05	k: 297	n:4260000
Cons ci ratio: 5.778934e-03	ci left: 9.719995e-02	ci right 9.776351e-02	k: 415271	n:4260000
KS ci ratio: 9.938974e-02	ci left: 3.468782e-04	ci right 3.833840e-04	k: 1554	n:4260000
TRIM28   4260000 perm   7965 sec   (535 perm/sec)   p_kst 3.647887e-04   p_cons 9.748146e-02   p_joint 6.971831e-05

Joint ci ratio: 3.704003e-01	ci left: 2.138490e-05	ci right 3.130498e-05	k: 111	n:4270000
Cons ci ratio: 5.771831e-03	ci left: 9.721038e-02	ci right 9.777331e-02	k: 416289	n:4270000
KS ci ratio: 9.926215e-02	ci left: 3.469793e-04	ci right 3.834462e-04	k: 1558	n:4270000
TRIM28   4270000 perm   8000 sec   (534 perm/sec)   p_kst 3.648712e-04   p_cons 9.749157e-02   p_joint 2.599532e-05

Joint ci ratio: 3.704003e-01	ci left: 2.133494e-05	ci right 3.123184e-05	k: 111	n:4280000
Cons ci ratio: 5.764908e-03	ci left: 9.721609e-02	ci right 9.777838e-02	k: 417287	n:4280000
KS ci ratio: 9.916679e-02	ci left: 3.468522e-04	ci right 3.832686e-04	k: 1561	n:4280000
TRIM28   4280000 perm   8034 sec   (533 perm/sec)   p_kst 3.647196e-04   p_cons 9.749696e-02   p_joint 2.593458e-05

Joint ci ratio: 3.704003e-01	ci left: 2.128520e-05	ci right 3.115904e-05	k: 111	n:4290000
Cons ci ratio: 5.758421e-03	ci left: 9.720921e-02	ci right 9.777082e-02	k: 418231	n:4290000
KS ci ratio: 9.907170e-02	ci left: 3.467256e-04	ci right 3.830918e-04	k: 1564	n:4290000
TRIM28   4290000 perm   8069 sec   (532 perm/sec)   p_kst 3.645688e-04   p_cons 9.748974e-02   p_joint 2.587413e-05

Joint ci ratio: 3.704003e-01	ci left: 2.123570e-05	ci right 3.108658e-05	k: 111	n:4300000
Cons ci ratio: 5.751835e-03	ci left: 9.720608e-02	ci right 9.776702e-02	k: 419191	n:4300000
KS ci ratio: 9.891380e-02	ci left: 3.470533e-04	ci right 3.833925e-04	k: 1569	n:4300000
TRIM28   4300000 perm   8104 sec   (531 perm/sec)   p_kst 3.648837e-04   p_cons 9.748628e-02   p_joint 2.581395e-05

Joint ci ratio: 3.704003e-01	ci left: 2.118643e-05	ci right 3.101445e-05	k: 111	n:4310000
Cons ci ratio: 5.745248e-03	ci left: 9.720365e-02	ci right 9.776394e-02	k: 420154	n:4310000
KS ci ratio: 9.875665e-02	ci left: 3.473795e-04	ci right 3.836917e-04	k: 1574	n:4310000
TRIM28   4310000 perm   8138 sec   (530 perm/sec)   p_kst 3.651972e-04   p_cons 9.748353e-02   p_joint 2.575406e-05

Joint ci ratio: 3.704003e-01	ci left: 2.113739e-05	ci right 3.094266e-05	k: 111	n:4320000
Cons ci ratio: 5.738548e-03	ci left: 9.720540e-02	ci right 9.776505e-02	k: 421135	n:4320000
KS ci ratio: 9.856906e-02	ci left: 3.479300e-04	ci right 3.842266e-04	k: 1580	n:4320000
TRIM28   4320000 perm   8173 sec   (529 perm/sec)   p_kst 3.657407e-04   p_cons 9.748495e-02   p_joint 2.569444e-05

Joint ci ratio: 3.704004e-01	ci left: 2.108857e-05	ci right 3.087120e-05	k: 111	n:4330000
Cons ci ratio: 5.731947e-03	ci left: 9.720484e-02	ci right 9.776383e-02	k: 422106	n:4330000
KS ci ratio: 9.828963e-02	ci left: 3.491538e-04	ci right 3.854689e-04	k: 1589	n:4330000
TRIM28   4330000 perm   8208 sec   (528 perm/sec)   p_kst 3.669746e-04   p_cons 9.748406e-02   p_joint 2.563510e-05

Joint ci ratio: 3.704004e-01	ci left: 2.103998e-05	ci right 3.080007e-05	k: 111	n:4340000
Cons ci ratio: 5.725270e-03	ci left: 9.720727e-02	ci right 9.776562e-02	k: 423090	n:4340000
KS ci ratio: 9.822789e-02	ci left: 3.487988e-04	ci right 3.850529e-04	k: 1591	n:4340000
TRIM28   4340000 perm   8243 sec   (526 perm/sec)   p_kst 3.665899e-04   p_cons 9.748618e-02   p_joint 2.557604e-05

Joint ci ratio: 3.704004e-01	ci left: 2.099161e-05	ci right 3.072926e-05	k: 111	n:4350000
Cons ci ratio: 5.718849e-03	ci left: 9.720257e-02	ci right 9.776027e-02	k: 424043	n:4350000
KS ci ratio: 9.819708e-02	ci left: 3.482212e-04	ci right 3.844033e-04	k: 1592	n:4350000
TRIM28   4350000 perm   8277 sec   (526 perm/sec)   p_kst 3.659770e-04   p_cons 9.748115e-02   p_joint 2.551724e-05

Joint ci ratio: 3.704004e-01	ci left: 2.094347e-05	ci right 3.065878e-05	k: 111	n:4360000
Cons ci ratio: 5.712077e-03	ci left: 9.720934e-02	ci right 9.776642e-02	k: 425046	n:4360000
KS ci ratio: 9.816631e-02	ci left: 3.476463e-04	ci right 3.837566e-04	k: 1593	n:4360000
TRIM28   4360000 perm   8312 sec   (525 perm/sec)   p_kst 3.653670e-04   p_cons 9.748761e-02   p_joint 2.545872e-05

Joint ci ratio: 3.704004e-01	ci left: 2.089554e-05	ci right 3.058862e-05	k: 111	n:4370000
Cons ci ratio: 5.705218e-03	ci left: 9.721952e-02	ci right 9.777598e-02	k: 426064	n:4370000
KS ci ratio: 9.810480e-02	ci left: 3.472972e-04	ci right 3.833474e-04	k: 1595	n:4370000
TRIM28   4370000 perm   8347 sec   (524 perm/sec)   p_kst 3.649886e-04   p_cons 9.749748e-02   p_joint 2.540046e-05

Joint ci ratio: 3.704004e-01	ci left: 2.084784e-05	ci right 3.051879e-05	k: 111	n:4380000
Cons ci ratio: 5.698746e-03	ci left: 9.721847e-02	ci right 9.777430e-02	k: 427033	n:4380000
KS ci ratio: 9.804341e-02	ci left: 3.469497e-04	ci right 3.829399e-04	k: 1597	n:4380000
TRIM28   4380000 perm   8381 sec   (523 perm/sec)   p_kst 3.646119e-04   p_cons 9.749612e-02   p_joint 2.534247e-05

Joint ci ratio: 3.704004e-01	ci left: 2.080035e-05	ci right 3.044927e-05	k: 111	n:4390000
Cons ci ratio: 5.692450e-03	ci left: 9.721266e-02	ci right 9.776783e-02	k: 427981	n:4390000
KS ci ratio: 9.801277e-02	ci left: 3.463816e-04	ci right 3.823010e-04	k: 1598	n:4390000
TRIM28   4390000 perm   8415 sec   (522 perm/sec)   p_kst 3.640091e-04   p_cons 9.748998e-02   p_joint 2.528474e-05

Joint ci ratio: 3.704004e-01	ci left: 2.075307e-05	ci right 3.038007e-05	k: 111	n:4400000
Cons ci ratio: 5.685926e-03	ci left: 9.721458e-02	ci right 9.776913e-02	k: 428963	n:4400000
KS ci ratio: 9.795155e-02	ci left: 3.460377e-04	ci right 3.818978e-04	k: 1600	n:4400000
TRIM28   4400000 perm   8450 sec   (521 perm/sec)   p_kst 3.636364e-04   p_cons 9.749159e-02   p_joint 2.522727e-05

Joint ci ratio: 3.704004e-01	ci left: 2.070601e-05	ci right 3.031118e-05	k: 111	n:4410000
Cons ci ratio: 5.679094e-03	ci left: 9.722669e-02	ci right 9.778064e-02	k: 429990	n:4410000
KS ci ratio: 9.785992e-02	ci left: 3.459167e-04	ci right 3.817288e-04	k: 1603	n:4410000
TRIM28   4410000 perm   8485 sec   (520 perm/sec)   p_kst 3.634921e-04   p_cons 9.750340e-02   p_joint 2.517007e-05

Joint ci ratio: 3.687578e-01	ci left: 2.086440e-05	ci right 3.048976e-05	k: 112	n:4420000
Cons ci ratio: 5.673039e-03	ci left: 9.721547e-02	ci right 9.776876e-02	k: 430914	n:4420000
KS ci ratio: 9.773812e-02	ci left: 3.460169e-04	ci right 3.817923e-04	k: 1607	n:4420000
TRIM28   4420000 perm   8520 sec   (519 perm/sec)   p_kst 3.635747e-04   p_cons 9.749186e-02   p_joint 2.533937e-05

Joint ci ratio: 3.687578e-01	ci left: 2.081730e-05	ci right 3.042094e-05	k: 112	n:4430000
Cons ci ratio: 5.666900e-03	ci left: 9.720746e-02	ci right 9.776011e-02	k: 431852	n:4430000
KS ci ratio: 9.758650e-02	ci left: 3.463369e-04	ci right 3.820866e-04	k: 1612	n:4430000
TRIM28   4430000 perm   8555 sec   (518 perm/sec)   p_kst 3.638826e-04   p_cons 9.748352e-02   p_joint 2.528217e-05

Joint ci ratio: 3.687578e-01	ci left: 2.077042e-05	ci right 3.035242e-05	k: 112	n:4440000
Cons ci ratio: 5.660507e-03	ci left: 9.720803e-02	ci right 9.776006e-02	k: 432828	n:4440000
KS ci ratio: 9.749589e-02	ci left: 3.462161e-04	ci right 3.819182e-04	k: 1615	n:4440000
TRIM28   4440000 perm   8590 sec   (517 perm/sec)   p_kst 3.637387e-04   p_cons 9.748378e-02   p_joint 2.522523e-05

Joint ci ratio: 3.655371e-01	ci left: 2.113172e-05	ci right 3.077494e-05	k: 114	n:4450000
Cons ci ratio: 5.654077e-03	ci left: 9.721040e-02	ci right 9.776181e-02	k: 433812	n:4450000
KS ci ratio: 9.725540e-02	ci left: 3.471921e-04	ci right 3.829015e-04	k: 1623	n:4450000
TRIM28   4450000 perm   8625 sec   (516 perm/sec)   p_kst 3.647191e-04   p_cons 9.748584e-02   p_joint 2.561798e-05

Joint ci ratio: 3.655371e-01	ci left: 2.108434e-05	ci right 3.070594e-05	k: 114	n:4460000
Cons ci ratio: 5.647597e-03	ci left: 9.721500e-02	ci right 9.776580e-02	k: 434806	n:4460000
KS ci ratio: 9.707622e-02	ci left: 3.477262e-04	ci right 3.834210e-04	k: 1629	n:4460000
TRIM28   4460000 perm   8660 sec   (515 perm/sec)   p_kst 3.652466e-04   p_cons 9.749013e-02   p_joint 2.556054e-05

Joint ci ratio: 3.639581e-01	ci left: 2.124038e-05	ci right 3.088137e-05	k: 115	n:4470000
Cons ci ratio: 5.641591e-03	ci left: 9.720549e-02	ci right 9.775565e-02	k: 435737	n:4470000
KS ci ratio: 9.695732e-02	ci left: 3.478215e-04	ci right 3.834797e-04	k: 1633	n:4470000
TRIM28   4470000 perm   8696 sec   (514 perm/sec)   p_kst 3.653244e-04   p_cons 9.748031e-02   p_joint 2.572707e-05

Joint ci ratio: 3.639581e-01	ci left: 2.119297e-05	ci right 3.081244e-05	k: 115	n:4480000
Cons ci ratio: 5.635504e-03	ci left: 9.719916e-02	ci right 9.774868e-02	k: 436682	n:4480000
KS ci ratio: 9.683886e-02	ci left: 3.479163e-04	ci right 3.835382e-04	k: 1637	n:4480000
TRIM28   4480000 perm   8731 sec   (513 perm/sec)   p_kst 3.654018e-04   p_cons 9.747366e-02   p_joint 2.566964e-05

Joint ci ratio: 3.623994e-01	ci left: 2.134816e-05	ci right 3.098677e-05	k: 116	n:4490000
Cons ci ratio: 5.629351e-03	ci left: 9.719552e-02	ci right 9.774442e-02	k: 437639	n:4490000
KS ci ratio: 9.675031e-02	ci left: 3.477934e-04	ci right 3.833684e-04	k: 1640	n:4490000
TRIM28   4490000 perm   8766 sec   (512 perm/sec)   p_kst 3.652561e-04   p_cons 9.746971e-02   p_joint 2.583519e-05

Joint ci ratio: 3.623994e-01	ci left: 2.130072e-05	ci right 3.091791e-05	k: 116	n:4500000
Cons ci ratio: 5.623127e-03	ci left: 9.719478e-02	ci right 9.774307e-02	k: 438609	n:4500000
KS ci ratio: 9.663260e-02	ci left: 3.478879e-04	ci right 3.834268e-04	k: 1644	n:4500000
TRIM28   4500000 perm   8803 sec   (511 perm/sec)   p_kst 3.653333e-04   p_cons 9.746867e-02   p_joint 2.577778e-05

Joint ci ratio: 3.608605e-01	ci left: 2.145508e-05	ci right 3.109115e-05	k: 117	n:4510000
Cons ci ratio: 5.616696e-03	ci left: 9.720113e-02	ci right 9.774883e-02	k: 439611	n:4510000
KS ci ratio: 9.654461e-02	ci left: 3.477657e-04	ci right 3.832579e-04	k: 1647	n:4510000
TRIM28   4510000 perm   8838 sec   (510 perm/sec)   p_kst 3.651885e-04   p_cons 9.747472e-02   p_joint 2.594235e-05

Joint ci ratio: 3.593410e-01	ci left: 2.160883e-05	ci right 3.126353e-05	k: 118	n:4520000
Cons ci ratio: 5.609913e-03	ci left: 9.721917e-02	ci right 9.776630e-02	k: 440666	n:4520000
KS ci ratio: 9.634019e-02	ci left: 3.485076e-04	ci right 3.839960e-04	k: 1654	n:4520000
TRIM28   4520000 perm   8873 sec   (509 perm/sec)   p_kst 3.659292e-04   p_cons 9.749248e-02   p_joint 2.610619e-05

Joint ci ratio: 3.593411e-01	ci left: 2.156113e-05	ci right 3.119452e-05	k: 118	n:4530000
Cons ci ratio: 5.603816e-03	ci left: 9.721640e-02	ci right 9.776292e-02	k: 441627	n:4530000
KS ci ratio: 9.628205e-02	ci left: 3.481691e-04	ci right 3.836004e-04	k: 1656	n:4530000
TRIM28   4530000 perm   8909 sec   (508 perm/sec)   p_kst 3.655629e-04   p_cons 9.748940e-02   p_joint 2.604857e-05

Joint ci ratio: 3.593411e-01	ci left: 2.151364e-05	ci right 3.112581e-05	k: 118	n:4540000
Cons ci ratio: 5.597948e-03	ci left: 9.720704e-02	ci right 9.775294e-02	k: 442558	n:4540000
KS ci ratio: 9.619501e-02	ci left: 3.480471e-04	ci right 3.834322e-04	k: 1659	n:4540000
TRIM28   4540000 perm   8945 sec   (508 perm/sec)   p_kst 3.654185e-04   p_cons 9.747974e-02   p_joint 2.599119e-05

Joint ci ratio: 3.578406e-01	ci left: 2.166634e-05	ci right 3.129690e-05	k: 119	n:4550000
Cons ci ratio: 5.592162e-03	ci left: 9.719575e-02	ci right 9.774102e-02	k: 443480	n:4550000
KS ci ratio: 9.602161e-02	ci left: 3.485692e-04	ci right 3.839399e-04	k: 1665	n:4550000
TRIM28   4550000 perm   8981 sec   (507 perm/sec)   p_kst 3.659341e-04   p_cons 9.746813e-02   p_joint 2.615385e-05

Joint ci ratio: 3.563589e-01	ci left: 2.181845e-05	ci right 3.146715e-05	k: 120	n:4560000
Cons ci ratio: 5.585725e-03	ci left: 9.720554e-02	ci right 9.775023e-02	k: 444498	n:4560000
KS ci ratio: 9.579185e-02	ci left: 3.495171e-04	ci right 3.848943e-04	k: 1673	n:4560000
TRIM28   4560000 perm   9018 sec   (506 perm/sec)   p_kst 3.668860e-04   p_cons 9.747763e-02   p_joint 2.631579e-05

Joint ci ratio: 3.563589e-01	ci left: 2.177071e-05	ci right 3.139830e-05	k: 120	n:4570000
Cons ci ratio: 5.579734e-03	ci left: 9.720195e-02	ci right 9.774604e-02	k: 445455	n:4570000
KS ci ratio: 9.567760e-02	ci left: 3.496066e-04	ci right 3.849483e-04	k: 1677	n:4570000
TRIM28   4570000 perm   9054 sec   (505 perm/sec)   p_kst 3.669584e-04   p_cons 9.747374e-02   p_joint 2.625821e-05

Joint ci ratio: 3.563589e-01	ci left: 2.172317e-05	ci right 3.132974e-05	k: 120	n:4580000
Cons ci ratio: 5.573561e-03	ci left: 9.720471e-02	ci right 9.774820e-02	k: 446441	n:4580000
KS ci ratio: 9.550698e-02	ci left: 3.501220e-04	ci right 3.854492e-04	k: 1683	n:4580000
TRIM28   4580000 perm   9090 sec   (504 perm/sec)   p_kst 3.674672e-04   p_cons 9.747620e-02   p_joint 2.620087e-05

Joint ci ratio: 3.563589e-01	ci left: 2.167585e-05	ci right 3.126149e-05	k: 120	n:4590000
Cons ci ratio: 5.567616e-03	ci left: 9.720092e-02	ci right 9.774382e-02	k: 447397	n:4590000
KS ci ratio: 9.545034e-02	ci left: 3.497845e-04	ci right 3.850556e-04	k: 1685	n:4590000
TRIM28   4590000 perm   9126 sec   (503 perm/sec)   p_kst 3.671024e-04   p_cons 9.747211e-02   p_joint 2.614379e-05

Joint ci ratio: 2.167688e-01	ci left: 6.338466e-05	ci right 7.899528e-05	k: 326	n:4600000
Cons ci ratio: 5.561264e-03	ci left: 9.721061e-02	ci right 9.775294e-02	k: 448415	n:4600000
KS ci ratio: 9.530910e-02	ci left: 3.500852e-04	ci right 3.853314e-04	k: 1690	n:4600000
TRIM28   4600000 perm   9163 sec   (502 perm/sec)   p_kst 3.673913e-04   p_cons 9.748152e-02   p_joint 7.086957e-05

Joint ci ratio: 3.548954e-01	ci left: 2.177935e-05	ci right 3.136208e-05	k: 121	n:4610000
Cons ci ratio: 5.555145e-03	ci left: 9.721354e-02	ci right 9.775529e-02	k: 449402	n:4610000
KS ci ratio: 9.511241e-02	ci left: 3.508080e-04	ci right 3.860501e-04	k: 1697	n:4610000
TRIM28   4610000 perm   9199 sec   (501 perm/sec)   p_kst 3.681128e-04   p_cons 9.748416e-02   p_joint 2.624729e-05

Joint ci ratio: 3.548954e-01	ci left: 2.173221e-05	ci right 3.129420e-05	k: 121	n:4620000
Cons ci ratio: 5.549136e-03	ci left: 9.721366e-02	ci right 9.775481e-02	k: 450376	n:4620000
KS ci ratio: 9.497267e-02	ci left: 3.511052e-04	ci right 3.863224e-04	k: 1702	n:4620000
TRIM28   4620000 perm   9236 sec   (500 perm/sec)   p_kst 3.683983e-04   p_cons 9.748398e-02   p_joint 2.619048e-05

Joint ci ratio: 3.548954e-01	ci left: 2.168527e-05	ci right 3.122661e-05	k: 121	n:4630000
Cons ci ratio: 5.543220e-03	ci left: 9.721139e-02	ci right 9.775196e-02	k: 451339	n:4630000
KS ci ratio: 9.491697e-02	ci left: 3.507686e-04	ci right 3.859303e-04	k: 1704	n:4630000
TRIM28   4630000 perm   9272 sec   (499 perm/sec)   p_kst 3.680346e-04   p_cons 9.748143e-02   p_joint 2.613391e-05

Joint ci ratio: 3.548954e-01	ci left: 2.163854e-05	ci right 3.115931e-05	k: 121	n:4640000
Cons ci ratio: 5.537297e-03	ci left: 9.721000e-02	ci right 9.774998e-02	k: 452306	n:4640000
KS ci ratio: 9.486136e-02	ci left: 3.504335e-04	ci right 3.855398e-04	k: 1706	n:4640000
TRIM28   4640000 perm   9309 sec   (498 perm/sec)   p_kst 3.676724e-04   p_cons 9.747974e-02   p_joint 2.607759e-05

Joint ci ratio: 2.141647e-01	ci left: 6.433071e-05	ci right 7.995898e-05	k: 334	n:4650000
Cons ci ratio: 5.531446e-03	ci left: 9.720690e-02	ci right 9.774629e-02	k: 453265	n:4650000
KS ci ratio: 9.477812e-02	ci left: 3.503097e-04	ci right 3.853711e-04	k: 1709	n:4650000
TRIM28   4650000 perm   9346 sec   (498 perm/sec)   p_kst 3.675269e-04   p_cons 9.747634e-02   p_joint 7.182796e-05

Joint ci ratio: 2.138458e-01	ci left: 6.439575e-05	ci right 8.001347e-05	k: 335	n:4660000
Cons ci ratio: 5.525581e-03	ci left: 9.720488e-02	ci right 9.774369e-02	k: 454229	n:4660000
KS ci ratio: 9.463985e-02	ci left: 3.506055e-04	ci right 3.856425e-04	k: 1714	n:4660000
TRIM28   4660000 perm   9382 sec   (497 perm/sec)   p_kst 3.678112e-04   p_cons 9.747403e-02   p_joint 7.188841e-05

Joint ci ratio: 2.135283e-01	ci left: 6.446053e-05	ci right 8.006771e-05	k: 336	n:4670000
Cons ci ratio: 5.519673e-03	ci left: 9.720480e-02	ci right 9.774303e-02	k: 455202	n:4670000
KS ci ratio: 9.458473e-02	ci left: 3.502729e-04	ci right 3.852551e-04	k: 1716	n:4670000
TRIM28   4670000 perm   9419 sec   (496 perm/sec)   p_kst 3.674518e-04   p_cons 9.747366e-02   p_joint 7.194861e-05

Joint ci ratio: 2.135283e-01	ci left: 6.432280e-05	ci right 7.989663e-05	k: 336	n:4680000
Cons ci ratio: 5.513785e-03	ci left: 9.720471e-02	ci right 9.774237e-02	k: 456175	n:4680000
KS ci ratio: 9.452971e-02	ci left: 3.499417e-04	ci right 3.848694e-04	k: 1718	n:4680000
TRIM28   4680000 perm   9456 sec   (495 perm/sec)   p_kst 3.670940e-04   p_cons 9.747329e-02   p_joint 7.179487e-05

Joint ci ratio: 2.132122e-01	ci left: 6.438747e-05	ci right 7.995087e-05	k: 337	n:4690000
Cons ci ratio: 5.507841e-03	ci left: 9.720697e-02	ci right 9.774406e-02	k: 457159	n:4690000
KS ci ratio: 9.444733e-02	ci left: 3.498201e-04	ci right 3.847035e-04	k: 1721	n:4690000
TRIM28   4690000 perm   9492 sec   (494 perm/sec)   p_kst 3.669510e-04   p_cons 9.747527e-02   p_joint 7.185501e-05

Joint ci ratio: 3.520217e-01	ci left: 2.175005e-05	ci right 3.122469e-05	k: 123	n:4700000
Cons ci ratio: 5.501638e-03	ci left: 9.721815e-02	ci right 9.775469e-02	k: 458185	n:4700000
KS ci ratio: 9.431050e-02	ci left: 3.501145e-04	ci right 3.849739e-04	k: 1726	n:4700000
TRIM28   4700000 perm   9531 sec   (493 perm/sec)   p_kst 3.672340e-04   p_cons 9.748617e-02   p_joint 2.617021e-05

Joint ci ratio: 3.520217e-01	ci left: 2.170387e-05	ci right 3.115840e-05	k: 123	n:4710000
Cons ci ratio: 5.495416e-03	ci left: 9.723055e-02	ci right 9.776655e-02	k: 459217	n:4710000
KS ci ratio: 9.425595e-02	ci left: 3.497858e-04	ci right 3.845912e-04	k: 1728	n:4710000
TRIM28   4710000 perm   9569 sec   (492 perm/sec)   p_kst 3.668790e-04   p_cons 9.749830e-02   p_joint 2.611465e-05

Joint ci ratio: 3.506108e-01	ci left: 2.185106e-05	ci right 3.132287e-05	k: 124	n:4720000
Cons ci ratio: 5.489598e-03	ci left: 9.723063e-02	ci right 9.776605e-02	k: 460191	n:4720000
KS ci ratio: 9.420150e-02	ci left: 3.494584e-04	ci right 3.842101e-04	k: 1730	n:4720000
TRIM28   4720000 perm   9607 sec   (491 perm/sec)   p_kst 3.665254e-04   p_cons 9.749809e-02   p_joint 2.627119e-05

Joint ci ratio: 3.506108e-01	ci left: 2.180486e-05	ci right 3.125665e-05	k: 124	n:4730000
Cons ci ratio: 5.483679e-03	ci left: 9.723450e-02	ci right 9.776937e-02	k: 461183	n:4730000
KS ci ratio: 9.417433e-02	ci left: 3.489261e-04	ci right 3.836142e-04	k: 1731	n:4730000
TRIM28   4730000 perm   9645 sec   (490 perm/sec)   p_kst 3.659619e-04   p_cons 9.750169e-02   p_joint 2.621564e-05

Joint ci ratio: 3.506108e-01	ci left: 2.175886e-05	ci right 3.119071e-05	k: 124	n:4740000
Cons ci ratio: 5.477951e-03	ci left: 9.723288e-02	ci right 9.776719e-02	k: 462149	n:4740000
KS ci ratio: 9.406577e-02	ci left: 3.490139e-04	ci right 3.836687e-04	k: 1735	n:4740000
TRIM28   4740000 perm   9683 sec   (490 perm/sec)   p_kst 3.660338e-04   p_cons 9.749979e-02   p_joint 2.616034e-05

Joint ci ratio: 3.506108e-01	ci left: 2.171305e-05	ci right 3.112504e-05	k: 124	n:4750000
Cons ci ratio: 5.472077e-03	ci left: 9.723653e-02	ci right 9.777028e-02	k: 463140	n:4750000
KS ci ratio: 9.401165e-02	ci left: 3.486903e-04	ci right 3.832919e-04	k: 1737	n:4750000
TRIM28   4750000 perm   9721 sec   (489 perm/sec)   p_kst 3.656842e-04   p_cons 9.750316e-02   p_joint 2.610526e-05

Joint ci ratio: 3.506108e-01	ci left: 2.166744e-05	ci right 3.105965e-05	k: 124	n:4760000
Cons ci ratio: 5.466085e-03	ci left: 9.724457e-02	ci right 9.777777e-02	k: 464152	n:4760000
KS ci ratio: 9.390365e-02	ci left: 3.487784e-04	ci right 3.833467e-04	k: 1741	n:4760000
TRIM28   4760000 perm   9760 sec   (488 perm/sec)   p_kst 3.657563e-04   p_cons 9.751092e-02   p_joint 2.605042e-05

Joint ci ratio: 3.506108e-01	ci left: 2.162201e-05	ci right 3.099454e-05	k: 124	n:4770000
Cons ci ratio: 5.460054e-03	ci left: 9.725446e-02	ci right 9.778712e-02	k: 465173	n:4770000
KS ci ratio: 9.382290e-02	ci left: 3.486614e-04	ci right 3.831868e-04	k: 1744	n:4770000
TRIM28   4770000 perm   9798 sec   (487 perm/sec)   p_kst 3.656184e-04   p_cons 9.752055e-02   p_joint 2.599581e-05

Joint ci ratio: 3.506108e-01	ci left: 2.157678e-05	ci right 3.092970e-05	k: 124	n:4780000
Cons ci ratio: 5.454321e-03	ci left: 9.725532e-02	ci right 9.778743e-02	k: 466151	n:4780000
KS ci ratio: 9.368876e-02	ci left: 3.489534e-04	ci right 3.834557e-04	k: 1749	n:4780000
TRIM28   4780000 perm   9837 sec   (486 perm/sec)   p_kst 3.658996e-04   p_cons 9.752113e-02   p_joint 2.594142e-05

Joint ci ratio: 3.506108e-01	ci left: 2.153173e-05	ci right 3.086512e-05	k: 124	n:4790000
Cons ci ratio: 5.448361e-03	ci left: 9.726410e-02	ci right 9.779568e-02	k: 467167	n:4790000
KS ci ratio: 9.363528e-02	ci left: 3.486327e-04	ci right 3.830824e-04	k: 1751	n:4790000
TRIM28   4790000 perm   9875 sec   (485 perm/sec)   p_kst 3.655532e-04   p_cons 9.752965e-02   p_joint 2.588727e-05

Joint ci ratio: 3.506109e-01	ci left: 2.148687e-05	ci right 3.080082e-05	k: 124	n:4800000
Cons ci ratio: 5.442724e-03	ci left: 9.726307e-02	ci right 9.779409e-02	k: 468136	n:4800000
KS ci ratio: 9.352857e-02	ci left: 3.487202e-04	ci right 3.831372e-04	k: 1755	n:4800000
TRIM28   4800000 perm   9915 sec   (484 perm/sec)   p_kst 3.656250e-04   p_cons 9.752833e-02   p_joint 2.583333e-05

Joint ci ratio: 3.506109e-01	ci left: 2.144220e-05	ci right 3.073679e-05	k: 124	n:4810000
Cons ci ratio: 5.437225e-03	ci left: 9.725809e-02	ci right 9.778855e-02	k: 469086	n:4810000
KS ci ratio: 9.334268e-02	ci left: 3.494165e-04	ci right 3.838299e-04	k: 1762	n:4810000
TRIM28   4810000 perm   9953 sec   (483 perm/sec)   p_kst 3.663202e-04   p_cons 9.752308e-02   p_joint 2.577963e-05

Joint ci ratio: 3.506109e-01	ci left: 2.139772e-05	ci right 3.067302e-05	k: 124	n:4820000
Cons ci ratio: 5.431673e-03	ci left: 9.725542e-02	ci right 9.778531e-02	k: 470047	n:4820000
KS ci ratio: 9.321058e-02	ci left: 3.497047e-04	ci right 3.840951e-04	k: 1767	n:4820000
TRIM28   4820000 perm   9992 sec   (482 perm/sec)   p_kst 3.665975e-04   p_cons 9.752012e-02   p_joint 2.572614e-05

Joint ci ratio: 3.506109e-01	ci left: 2.135342e-05	ci right 3.060951e-05	k: 124	n:4830000
Cons ci ratio: 5.426087e-03	ci left: 9.725441e-02	ci right 9.778375e-02	k: 471016	n:4830000
KS ci ratio: 9.313161e-02	ci left: 3.495874e-04	ci right 3.839355e-04	k: 1770	n:4830000
TRIM28   4830000 perm   10031 sec   (481 perm/sec)   p_kst 3.664596e-04   p_cons 9.751884e-02   p_joint 2.567288e-05

Joint ci ratio: 3.506109e-01	ci left: 2.130930e-05	ci right 3.054627e-05	k: 124	n:4840000
Cons ci ratio: 5.420289e-03	ci left: 9.726084e-02	ci right 9.778965e-02	k: 472021	n:4840000
KS ci ratio: 9.307908e-02	ci left: 3.492687e-04	ci right 3.835651e-04	k: 1772	n:4840000
TRIM28   4840000 perm   10071 sec   (481 perm/sec)   p_kst 3.661157e-04   p_cons 9.752500e-02   p_joint 2.561983e-05

Joint ci ratio: 3.506109e-01	ci left: 2.126536e-05	ci right 3.048329e-05	k: 124	n:4850000
Cons ci ratio: 5.415226e-03	ci left: 9.724396e-02	ci right 9.777219e-02	k: 472913	n:4850000
KS ci ratio: 9.294810e-02	ci left: 3.495555e-04	ci right 3.838291e-04	k: 1777	n:4850000
TRIM28   4850000 perm   10110 sec   (480 perm/sec)   p_kst 3.663918e-04   p_cons 9.750784e-02   p_joint 2.556701e-05

Joint ci ratio: 3.506109e-01	ci left: 2.122160e-05	ci right 3.042057e-05	k: 124	n:4860000
Cons ci ratio: 5.409261e-03	ci left: 9.725696e-02	ci right 9.778467e-02	k: 473950	n:4860000
KS ci ratio: 9.289588e-02	ci left: 3.492382e-04	ci right 3.834604e-04	k: 1779	n:4860000
TRIM28   4860000 perm   10150 sec   (479 perm/sec)   p_kst 3.660494e-04   p_cons 9.752058e-02   p_joint 2.551440e-05

Joint ci ratio: 3.506109e-01	ci left: 2.117803e-05	ci right 3.035810e-05	k: 124	n:4870000
Cons ci ratio: 5.404153e-03	ci left: 9.724263e-02	ci right 9.776976e-02	k: 474854	n:4870000
KS ci ratio: 9.286983e-02	ci left: 3.487216e-04	ci right 3.828832e-04	k: 1780	n:4870000
TRIM28   4870000 perm   10189 sec   (478 perm/sec)   p_kst 3.655031e-04   p_cons 9.750595e-02   p_joint 2.546201e-05

Joint ci ratio: 3.506109e-01	ci left: 2.113463e-05	ci right 3.029589e-05	k: 124	n:4880000
Cons ci ratio: 5.398519e-03	ci left: 9.724596e-02	ci right 9.777256e-02	k: 475844	n:4880000
KS ci ratio: 9.276571e-02	ci left: 3.488077e-04	ci right 3.829373e-04	k: 1784	n:4880000
TRIM28   4880000 perm   10228 sec   (477 perm/sec)   p_kst 3.655738e-04   p_cons 9.750902e-02   p_joint 2.540984e-05

Joint ci ratio: 3.506109e-01	ci left: 2.109141e-05	ci right 3.023394e-05	k: 124	n:4890000
Cons ci ratio: 5.392671e-03	ci left: 9.725683e-02	ci right 9.778291e-02	k: 476871	n:4890000
KS ci ratio: 9.261017e-02	ci left: 3.492929e-04	ci right 3.834096e-04	k: 1790	n:4890000
TRIM28   4890000 perm   10267 sec   (476 perm/sec)   p_kst 3.660532e-04   p_cons 9.751963e-02   p_joint 2.535787e-05

Joint ci ratio: 3.506110e-01	ci left: 2.104837e-05	ci right 3.017224e-05	k: 124	n:4900000
Cons ci ratio: 5.387261e-03	ci left: 9.725400e-02	ci right 9.777954e-02	k: 477831	n:4900000
KS ci ratio: 9.253271e-02	ci left: 3.491782e-04	ci right 3.832535e-04	k: 1793	n:4900000
TRIM28   4900000 perm   10305 sec   (475 perm/sec)   p_kst 3.659184e-04   p_cons 9.751653e-02   p_joint 2.530612e-05

Joint ci ratio: 3.506110e-01	ci left: 2.100550e-05	ci right 3.011079e-05	k: 124	n:4910000
Cons ci ratio: 5.381823e-03	ci left: 9.725260e-02	ci right 9.777761e-02	k: 478798	n:4910000
KS ci ratio: 9.242972e-02	ci left: 3.492628e-04	ci right 3.833065e-04	k: 1797	n:4910000
TRIM28   4910000 perm   10345 sec   (475 perm/sec)   p_kst 3.659878e-04   p_cons 9.751487e-02   p_joint 2.525458e-05

Joint ci ratio: 3.506110e-01	ci left: 2.096280e-05	ci right 3.004958e-05	k: 124	n:4920000
Cons ci ratio: 5.376463e-03	ci left: 9.724919e-02	ci right 9.777365e-02	k: 479755	n:4920000
KS ci ratio: 9.230146e-02	ci left: 3.495457e-04	ci right 3.835671e-04	k: 1802	n:4920000
TRIM28   4920000 perm   10384 sec   (474 perm/sec)   p_kst 3.662602e-04   p_cons 9.751118e-02   p_joint 2.520325e-05

Joint ci ratio: 3.506110e-01	ci left: 2.092028e-05	ci right 2.998863e-05	k: 124	n:4930000
Cons ci ratio: 5.371039e-03	ci left: 9.724842e-02	ci right 9.777234e-02	k: 480725	n:4930000
KS ci ratio: 9.214824e-02	ci left: 3.500257e-04	ci right 3.840342e-04	k: 1808	n:4930000
TRIM28   4930000 perm   10424 sec   (473 perm/sec)   p_kst 3.667343e-04   p_cons 9.751014e-02   p_joint 2.515213e-05

Joint ci ratio: 3.506110e-01	ci left: 2.087793e-05	ci right 2.992793e-05	k: 124	n:4940000
Cons ci ratio: 5.365941e-03	ci left: 9.723754e-02	ci right 9.776091e-02	k: 481645	n:4940000
KS ci ratio: 9.209736e-02	ci left: 3.497127e-04	ci right 3.836710e-04	k: 1810	n:4940000
TRIM28   4940000 perm   10464 sec   (472 perm/sec)   p_kst 3.663968e-04   p_cons 9.749899e-02   p_joint 2.510121e-05

Joint ci ratio: 3.506110e-01	ci left: 2.083576e-05	ci right 2.986747e-05	k: 124	n:4950000
Cons ci ratio: 5.360462e-03	ci left: 9.723962e-02	ci right 9.776246e-02	k: 482629	n:4950000
KS ci ratio: 9.199582e-02	ci left: 3.497956e-04	ci right 3.837226e-04	k: 1814	n:4950000
TRIM28   4950000 perm   10504 sec   (471 perm/sec)   p_kst 3.664646e-04   p_cons 9.750081e-02   p_joint 2.505051e-05

Joint ci ratio: 3.506110e-01	ci left: 2.079375e-05	ci right 2.980725e-05	k: 124	n:4960000
Cons ci ratio: 5.355209e-03	ci left: 9.723485e-02	ci right 9.775715e-02	k: 483579	n:4960000
KS ci ratio: 9.186935e-02	ci left: 3.500753e-04	ci right 3.839802e-04	k: 1819	n:4960000
TRIM28   4960000 perm   10544 sec   (470 perm/sec)   p_kst 3.667339e-04   p_cons 9.749577e-02   p_joint 2.500000e-05

Joint ci ratio: 3.506110e-01	ci left: 2.075191e-05	ci right 2.974728e-05	k: 124	n:4970000
Cons ci ratio: 5.349770e-03	ci left: 9.723673e-02	ci right 9.775851e-02	k: 484562	n:4970000
KS ci ratio: 9.176856e-02	ci left: 3.501573e-04	ci right 3.840309e-04	k: 1823	n:4970000
TRIM28   4970000 perm   10584 sec   (470 perm/sec)   p_kst 3.668008e-04   p_cons 9.749738e-02   p_joint 2.494970e-05

Joint ci ratio: 3.506110e-01	ci left: 2.071024e-05	ci right 2.968754e-05	k: 124	n:4980000
Cons ci ratio: 5.344573e-03	ci left: 9.723118e-02	ci right 9.775242e-02	k: 485508	n:4980000
KS ci ratio: 9.164302e-02	ci left: 3.504351e-04	ci right 3.842868e-04	k: 1828	n:4980000
TRIM28   4980000 perm   10625 sec   (469 perm/sec)   p_kst 3.670683e-04   p_cons 9.749157e-02   p_joint 2.489960e-05

Joint ci ratio: 3.506110e-01	ci left: 2.066874e-05	ci right 2.962805e-05	k: 124	n:4990000
Cons ci ratio: 5.339384e-03	ci left: 9.722585e-02	ci right 9.774656e-02	k: 486455	n:4990000
KS ci ratio: 9.151800e-02	ci left: 3.507119e-04	ci right 3.845416e-04	k: 1833	n:4990000
TRIM28   4990000 perm   10665 sec   (468 perm/sec)   p_kst 3.673347e-04   p_cons 9.748597e-02   p_joint 2.484970e-05

Joint ci ratio: 3.492169e-01	ci left: 2.080982e-05	ci right 2.978630e-05	k: 125	n:5000000
Cons ci ratio: 5.334072e-03	ci left: 9.722514e-02	ci right 9.774532e-02	k: 487425	n:5000000
KS ci ratio: 9.139349e-02	ci left: 3.509876e-04	ci right 3.847954e-04	k: 1838	n:5000000
TRIM28   5000000 perm   10706 sec   (467 perm/sec)   p_kst 3.676000e-04   p_cons 9.748500e-02   p_joint 2.500000e-05

Outputting figure to mutsig2_images.part000000000181/TRIM28.2_2576_5000000_0.0003676_0.097485_2.5e-05.png
                gene_name: TRIM28
               theta_stop: 0.35 
                    nperm: 5000000 
                     p_ks: 0.00037 
        ci_ks_bounds_left: 0.00035 
       ci_ks_bounds_right: 0.00038 
                   p_cons: 0.097 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.098 
                  p_joint: 2.50e-05 
     ci_joint_bounds_left: 2.08e-05 
    ci_joint_bounds_right: 2.98e-05 

Current progress: 93 percent done.
TRIM29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.062734e-02	ci left: 6.113069e-01	ci right 6.304227e-01	k: 6209	n:10000
Cons ci ratio: 2.803301e-02	ci left: 6.522301e-01	ci right 6.708757e-01	k: 6616	n:10000
KS ci ratio: 8.135889e-02	ci left: 1.806791e-01	ci right 1.961029e-01	k: 1883	n:10000
TRIM29   10000 perm   2 sec   (6377 perm/sec)   p_kst 1.883000e-01   p_cons 6.616000e-01   p_joint 6.209000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM29.2_1803_10000_0.1883_0.6616_0.6209.png
                gene_name: TRIM29
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 95 percent done.
TRIM35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.192613e-02	ci left: 2.206956e-01	ci right 2.372626e-01	k: 2289	n:10000
Cons ci ratio: 7.717009e-02	ci left: 1.971244e-01	ci right 2.130478e-01	k: 2050	n:10000
KS ci ratio: 1.557042e-01	ci left: 5.494237e-02	ci right 6.431621e-02	k: 595	n:10000
TRIM35   10000 perm   2 sec   (6287 perm/sec)   p_kst 5.950000e-02   p_cons 2.050000e-01   p_joint 2.289000e-01

Joint ci ratio: 5.322437e-02	ci left: 2.076398e-01	ci right 2.190437e-01	k: 4266	n:20000
Cons ci ratio: 5.527244e-02	ci left: 1.953658e-01	ci right 2.065212e-01	k: 4018	n:20000
KS ci ratio: 1.128981e-01	ci left: 5.363180e-02	ci right 6.009779e-02	k: 1136	n:20000
TRIM35   20000 perm   4 sec   (5526 perm/sec)   p_kst 5.680000e-02   p_cons 2.009000e-01   p_joint 2.133000e-01

Joint ci ratio: 5.740248e-02	ci left: 1.306580e-01	ci right 1.384129e-01	k: 4035	n:30000
Cons ci ratio: 4.505280e-02	ci left: 1.969403e-01	ci right 2.060509e-01	k: 6044	n:30000
KS ci ratio: 9.106868e-02	ci left: 5.551169e-02	ci right 6.084094e-02	k: 1744	n:30000
TRIM35   30000 perm   6 sec   (5280 perm/sec)   p_kst 5.813333e-02   p_cons 2.014667e-01   p_joint 1.345000e-01

Outputting figure to mutsig2_images.part000000000181/TRIM35.2_1506_30000_0.058133_0.20147_0.1345.png
                gene_name: TRIM35
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 97 percent done.
TRIM39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.077436e-02	ci left: 2.847843e-01	ci right 3.027359e-01	k: 2937	n:10000
Cons ci ratio: 7.660225e-03	ci left: 9.594273e-01	ci right 9.668997e-01	k: 9633	n:10000
KS ci ratio: 3.265993e-01	ci left: 1.188149e-02	ci right 1.660771e-02	k: 141	n:10000
TRIM39   10000 perm   2 sec   (6429 perm/sec)   p_kst 1.410000e-02   p_cons 9.633000e-01   p_joint 2.937000e-01

Joint ci ratio: 4.242653e-02	ci left: 2.927590e-01	ci right 3.054994e-01	k: 5982	n:20000
Cons ci ratio: 5.421104e-03	ci left: 9.604975e-01	ci right 9.657667e-01	k: 19264	n:20000
KS ci ratio: 2.343168e-01	ci left: 1.218208e-02	ci right 1.546151e-02	k: 275	n:20000
TRIM39   20000 perm   4 sec   (5710 perm/sec)   p_kst 1.375000e-02   p_cons 9.632000e-01   p_joint 2.991000e-01

Joint ci ratio: 4.892485e-02	ci left: 1.719366e-01	ci right 1.805928e-01	k: 5287	n:30000
Cons ci ratio: 4.460685e-03	ci left: 9.604252e-01	ci right 9.647512e-01	k: 28879	n:30000
KS ci ratio: 1.892454e-01	ci left: 1.276459e-02	ci right 1.546404e-02	k: 422	n:30000
TRIM39   30000 perm   6 sec   (5425 perm/sec)   p_kst 1.406667e-02   p_cons 9.626333e-01   p_joint 1.762333e-01

Joint ci ratio: 6.527615e-02	ci left: 7.999409e-02	ci right 8.541667e-02	k: 3307	n:40000
Cons ci ratio: 3.809174e-03	ci left: 9.617438e-01	ci right 9.654385e-01	k: 38545	n:40000
KS ci ratio: 1.633056e-01	ci left: 1.303941e-02	ci right 1.538189e-02	k: 567	n:40000
TRIM39   40000 perm   8 sec   (5243 perm/sec)   p_kst 1.417500e-02   p_cons 9.636250e-01   p_joint 8.267500e-02

Joint ci ratio: 2.936161e-02	ci left: 2.589259e-01	ci right 2.666617e-01	k: 13139	n:50000
Cons ci ratio: 3.416774e-03	ci left: 9.617374e-01	ci right 9.650485e-01	k: 48171	n:50000
KS ci ratio: 1.457533e-01	ci left: 1.321978e-02	ci right 1.531717e-02	k: 712	n:50000
TRIM39   50000 perm   10 sec   (5104 perm/sec)   p_kst 1.424000e-02   p_cons 9.634200e-01   p_joint 2.627800e-01

Joint ci ratio: 2.761786e-02	ci left: 2.478828e-01	ci right 2.548413e-01	k: 15081	n:60000
Cons ci ratio: 3.133079e-03	ci left: 9.615607e-01	ci right 9.645943e-01	k: 57786	n:60000
KS ci ratio: 1.335778e-01	ci left: 1.320405e-02	ci right 1.511003e-02	k: 848	n:60000
TRIM39   60000 perm   12 sec   (4984 perm/sec)   p_kst 1.413333e-02   p_cons 9.631000e-01   p_joint 2.513500e-01

Joint ci ratio: 3.093223e-02	ci left: 1.837198e-01	ci right 1.895062e-01	k: 13062	n:70000
Cons ci ratio: 2.905829e-03	ci left: 9.615461e-01	ci right 9.643582e-01	k: 67408	n:70000
KS ci ratio: 1.244037e-01	ci left: 1.311499e-02	ci right 1.486850e-02	k: 978	n:70000
TRIM39   70000 perm   14 sec   (4873 perm/sec)   p_kst 1.397143e-02   p_cons 9.629714e-01   p_joint 1.866000e-01

Joint ci ratio: 2.895729e-02	ci left: 1.836693e-01	ci right 1.890785e-01	k: 14909	n:80000
Cons ci ratio: 2.724148e-03	ci left: 9.614781e-01	ci right 9.641132e-01	k: 77025	n:80000
KS ci ratio: 1.165731e-01	ci left: 1.312441e-02	ci right 1.476111e-02	k: 1114	n:80000
TRIM39   80000 perm   17 sec   (4774 perm/sec)   p_kst 1.392500e-02   p_cons 9.628125e-01   p_joint 1.863625e-01

Joint ci ratio: 2.261199e-02	ci left: 2.474946e-01	ci right 2.531660e-01	k: 22529	n:90000
Cons ci ratio: 2.565571e-03	ci left: 9.616333e-01	ci right 9.641145e-01	k: 86660	n:90000
KS ci ratio: 1.097013e-01	ci left: 1.322093e-02	ci right 1.476619e-02	k: 1258	n:90000
TRIM39   90000 perm   19 sec   (4681 perm/sec)   p_kst 1.397778e-02   p_cons 9.628889e-01   p_joint 2.503222e-01

Joint ci ratio: 2.088686e-02	ci left: 2.577518e-01	ci right 2.632021e-01	k: 26047	n:100000
Cons ci ratio: 2.431461e-03	ci left: 9.617709e-01	ci right 9.641221e-01	k: 96296	n:100000
KS ci ratio: 1.042568e-01	ci left: 1.321272e-02	ci right 1.467567e-02	k: 1393	n:100000
TRIM39   100000 perm   22 sec   (4593 perm/sec)   p_kst 1.393000e-02   p_cons 9.629600e-01   p_joint 2.604700e-01

Joint ci ratio: 1.990770e-02	ci left: 2.580168e-01	ci right 2.632140e-01	k: 28667	n:110000
Cons ci ratio: 2.319051e-03	ci left: 9.618031e-01	ci right 9.640451e-01	k: 105923	n:110000
KS ci ratio: 9.951692e-02	ci left: 1.321643e-02	ci right 1.460937e-02	k: 1529	n:110000
TRIM39   110000 perm   24 sec   (4510 perm/sec)   p_kst 1.390000e-02   p_cons 9.629364e-01   p_joint 2.606091e-01

Outputting figure to mutsig2_images.part000000000181/TRIM39.2_1585_110000_0.0139_0.96294_0.26061.png
                gene_name: TRIM39
               theta_stop: 0.100 
                    nperm: 110000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.015 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.26 

Current progress: 98 percent done.
TRIM40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.566287e-03	ci left: 9.502311e-01	ci right 9.585016e-01	k: 9545	n:10000
KS ci ratio: 2.392387e-02	ci left: 7.197687e-01	ci right 7.372980e-01	k: 7286	n:10000
TRIM40   10000 perm   2 sec   (6615 perm/sec)   p_kst 7.286000e-01   p_cons 9.545000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000181/TRIM40.2_710_10000_0.7286_0.9545_1.png
                gene_name: TRIM40
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000181
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 181 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1708>
Subject: Job 9894191: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1708>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000182> was used as the working directory.
Started at Sat Oct  6 00:33:19 2012
Results reported at Sat Oct  6 00:43:41 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000182.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000182.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 182  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000182.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    629.94 sec.
    Max Memory :      3537 MB
    Max Swap   :      6007 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
182
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 182
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 182: processing genes 16318 - 16407
Calculating significance of each gene.
Using projection method.
16318	TRIM42	1.575184e-02
16319	TRIM43	1.029756e-01
16320	TRIM44	4.861336e-03
16321	TRIM45	1.582278e-01
16322	TRIM46	7.981395e-01
16323	TRIM47	1
16324	TRIM48	1
16325	TRIM49	3.128451e-01
16326	TRIM5	1
16327	TRIM50	8.566571e-01
16328	TRIM52	7.240793e-01
16329	TRIM54	6.259184e-01
16330	TRIM55	2.712808e-04
16331	TRIM56	8.865454e-01
16332	TRIM58	3.319667e-01
16333	TRIM59	3.228649e-01
16334	TRIM6	1.252994e-01
16335	TRIM6-TRIM34	1.299676e-01
16336	TRIM60	3.366902e-01
16337	TRIM61	1
16338	TRIM62	3.821508e-01
16339	TRIM63	3.290790e-01
16340	TRIM65	1
16341	TRIM67	7.500017e-01
16342	TRIM68	3.111882e-01
16343	TRIM69	1.211037e-01
16344	TRIM7	7.360414e-01
16345	TRIM71	9.244863e-01
16346	TRIM72	8.547711e-01
16347	TRIM73	2.090952e-01
16348	TRIM74	1
16349	TRIM8	1
16350	TRIM9	2.545709e-01
16351	TRIML1	3.000398e-01
16352	TRIML2	1.146098e-01
16353	TRIO	8.786222e-01
16354	TRIOBP	5.387435e-01
16355	TRIP10	1
16356	TRIP11	7.288181e-01
16357	TRIP12	1.895778e-01
16358	TRIP13	7.763716e-01
16359	TRIP4	1.430642e-01
16360	TRIP6	7.568792e-01
16361	TRIT1	3.208847e-01
16362	TRMT1	9.795043e-01
16363	TRMT11	6.270349e-01
16364	TRMT112	3.680031e-01
16365	TRMT12	3.988435e-01
16366	TRMT2A	1
16367	TRMT2B	5.345391e-01
16368	TRMT5	6.777647e-01
16369	TRMT6	7.934603e-01
16370	TRMT61A	1
16371	TRMT61B	8.631166e-01
16372	TRMU	1.415646e-01
16373	TRNAU1AP	3.439673e-01
16374	TRNT1	6.524663e-01
16375	TRO	5.488056e-01
16376	TROAP	4.333471e-01
16377	TROVE2	1.656599e-01
16378	TRPA1	2.324387e-03
16379	TRPC1	4.535273e-01
16380	TRPC3	1.673325e-01
16381	TRPC4	3.571886e-06
16382	TRPC4AP	5.944651e-01
16383	TRPC5	1.652385e-01
16384	TRPC6	1.622334e-03
16385	TRPC7	7.912086e-02
16386	TRPM1	7.363113e-01
16387	TRPM2	6.460150e-01
16388	TRPM3	1.830607e-01
16389	TRPM4	9.672074e-01
16390	TRPM5	1
16391	TRPM6	1.071528e-01
16392	TRPM7	4.816793e-01
16393	TRPM8	6.076342e-01
16394	TRPS1	5.721036e-05
16395	TRPT1	1
16396	TRPV1	5.976563e-01
16397	TRPV2	3.171038e-01
16398	TRPV3	7.947680e-01
16399	TRPV4	6.777208e-01
16400	TRPV5	3.984286e-02
16401	TRPV6	1.821841e-02
In gene TRRAP the following bins exceed PROBCAP:
    COAD-AA-3678	categ 6	N = 11761   n = 1	mu =   2.96e-07
16402	TRRAP	7.241464e-01
16403	TRUB1	7.886210e-01
16404	TRUB2	6.517389e-01
16405	TRYX3	2.354140e-01
16406	TSC1	9.150430e-01
16407	TSC2	9.980082e-01
Done

Running MutSig 2:
Scatter job 182: processing genes 16318 - 16407
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TRPM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.566438e-02	ci left: 2.035310e-01	ci right 2.196374e-01	k: 2115	n:10000
Cons ci ratio: 1.424392e-01	ci left: 6.536500e-02	ci right 7.548697e-02	k: 703	n:10000
KS ci ratio: 5.210859e-02	ci left: 3.518763e-01	ci right 3.708045e-01	k: 3613	n:10000
TRPM6   10000 perm   4 sec   (2770 perm/sec)   p_kst 3.613000e-01   p_cons 7.030000e-02   p_joint 2.115000e-01

Joint ci ratio: 5.751139e-02	ci left: 1.830507e-01	ci right 1.939400e-01	k: 3769	n:20000
Cons ci ratio: 1.019739e-01	ci left: 6.528115e-02	ci right 7.234484e-02	k: 1375	n:20000
KS ci ratio: 3.694620e-02	ci left: 3.534430e-01	ci right 3.667977e-01	k: 7202	n:20000
TRPM6   20000 perm   10 sec   (1983 perm/sec)   p_kst 3.601000e-01   p_cons 6.875000e-02   p_joint 1.884500e-01

Joint ci ratio: 5.435152e-02	ci left: 1.437356e-01	ci right 1.517994e-01	k: 4432	n:30000
Cons ci ratio: 8.291733e-02	ci left: 6.645133e-02	ci right 7.223241e-02	k: 2079	n:30000
KS ci ratio: 3.022213e-02	ci left: 3.538347e-01	ci right 3.647259e-01	k: 10778	n:30000
TRPM6   30000 perm   13 sec   (2258 perm/sec)   p_kst 3.592667e-01   p_cons 6.930000e-02   p_joint 1.477333e-01

Outputting figure to mutsig2_images.part000000000182/TRPM6.21_6269_30000_0.35927_0.0693_0.14773.png
                gene_name: TRPM6
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 1 percent done.
TRRAP
Processing conservation and coverage...
84% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.874356e-02	ci left: 6.408607e-01	ci right 6.596517e-01	k: 6503	n:10000
Cons ci ratio: 2.509415e-02	ci left: 7.002900e-01	ci right 7.181879e-01	k: 7093	n:10000
KS ci ratio: 4.113893e-02	ci left: 4.659699e-01	ci right 4.856442e-01	k: 4758	n:10000
TRRAP   10000 perm   3 sec   (3203 perm/sec)   p_kst 4.758000e-01   p_cons 7.093000e-01   p_joint 6.503000e-01

Outputting figure to mutsig2_images.part000000000182/TRRAP.21_11773_10000_0.4758_0.7093_0.6503.png
                gene_name: TRRAP
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 3 percent done.
TRPS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.819591e-02	ci left: 6.496136e-01	ci right 6.682937e-01	k: 6590	n:10000
Cons ci ratio: 5.902015e-02	ci left: 2.969755e-01	ci right 3.151376e-01	k: 3060	n:10000
KS ci ratio: 1.552846e-02	ci left: 8.575336e-01	ci right 8.710534e-01	k: 8644	n:10000
TRPS1   10000 perm   2 sec   (4669 perm/sec)   p_kst 8.644000e-01   p_cons 3.060000e-01   p_joint 6.590000e-01

Outputting figure to mutsig2_images.part000000000182/TRPS1.19_3909_10000_0.8644_0.306_0.659.png
                gene_name: TRPS1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 4 percent done.
TRPA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.777008e-02	ci left: 5.086527e-01	ci right 5.283365e-01	k: 5185	n:10000
Cons ci ratio: 7.724826e-03	ci left: 9.587987e-01	ci right 9.663288e-01	k: 9627	n:10000
KS ci ratio: 6.531663e-02	ci left: 2.560727e-01	ci right 2.734646e-01	k: 2647	n:10000
TRPA1   10000 perm   2 sec   (4829 perm/sec)   p_kst 2.647000e-01   p_cons 9.627000e-01   p_joint 5.185000e-01

Outputting figure to mutsig2_images.part000000000182/TRPA1.18_3468_10000_0.2647_0.9627_0.5185.png
                gene_name: TRPA1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 6 percent done.
TRPC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.613873e-02	ci left: 5.306718e-01	ci right 5.503046e-01	k: 5405	n:10000
Cons ci ratio: 6.369573e-02	ci left: 2.658691e-01	ci right 2.834624e-01	k: 2746	n:10000
KS ci ratio: 3.644533e-02	ci left: 5.264667e-01	ci right 5.461122e-01	k: 5363	n:10000
TRPC4   10000 perm   2 sec   (4048 perm/sec)   p_kst 5.363000e-01   p_cons 2.746000e-01   p_joint 5.405000e-01

Outputting figure to mutsig2_images.part000000000182/TRPC4.18_2989_10000_0.5363_0.2746_0.5405.png
                gene_name: TRPC4
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 7 percent done.
TRPM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.524595e-02	ci left: 5.430910e-01	ci right 5.626782e-01	k: 5529	n:10000
KS ci ratio: 1.771079e-02	ci left: 8.230004e-01	ci right 8.378066e-01	k: 8305	n:10000
TRPM7   10000 perm   2 sec   (4076 perm/sec)   p_kst 8.305000e-01   p_cons 5.529000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRPM7.15_5754_10000_0.8305_0.5529_1.png
                gene_name: TRPM7
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
TRIP12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.000613e-02	ci left: 6.209529e-01	ci right 6.399710e-01	k: 6305	n:10000
Cons ci ratio: 6.248709e-02	ci left: 2.734923e-01	ci right 2.912347e-01	k: 2823	n:10000
KS ci ratio: 3.032889e-02	ci left: 6.159285e-01	ci right 6.349984e-01	k: 6255	n:10000
TRIP12   10000 perm   3 sec   (3997 perm/sec)   p_kst 6.255000e-01   p_cons 2.823000e-01   p_joint 6.305000e-01

Outputting figure to mutsig2_images.part000000000182/TRIP12.14_6139_10000_0.6255_0.2823_0.6305.png
                gene_name: TRIP12
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 10 percent done.
TRIO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.363793e-02	ci left: 2.126039e-01	ci right 2.289591e-01	k: 2207	n:10000
Cons ci ratio: 8.096203e-02	ci left: 1.821553e-01	ci right 1.976258e-01	k: 1898	n:10000
KS ci ratio: 7.516901e-02	ci left: 2.057000e-01	ci right 2.218670e-01	k: 2137	n:10000
TRIO   10000 perm   3 sec   (3645 perm/sec)   p_kst 2.137000e-01   p_cons 1.898000e-01   p_joint 2.207000e-01

Outputting figure to mutsig2_images.part000000000182/TRIO.13_9522_10000_0.2137_0.1898_0.2207.png
                gene_name: TRIO
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 12 percent done.
TRPC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.432065e-01	ci left: 6.468834e-02	ci right 7.476406e-02	k: 696	n:10000
Cons ci ratio: 3.289572e-01	ci left: 1.169777e-02	ci right 1.639161e-02	k: 139	n:10000
KS ci ratio: 6.587477e-02	ci left: 2.528084e-01	ci right 2.701307e-01	k: 2614	n:10000
TRPC6   10000 perm   2 sec   (5192 perm/sec)   p_kst 2.614000e-01   p_cons 1.390000e-02   p_joint 6.960000e-02

Joint ci ratio: 1.272464e-01	ci left: 4.241066e-02	ci right 4.822246e-02	k: 905	n:20000
Cons ci ratio: 2.293135e-01	ci left: 1.274765e-02	ci right 1.609571e-02	k: 287	n:20000
KS ci ratio: 4.750290e-02	ci left: 2.479287e-01	ci right 2.600429e-01	k: 5079	n:20000
TRPC6   20000 perm   4 sec   (4719 perm/sec)   p_kst 2.539500e-01   p_cons 1.435000e-02   p_joint 4.525000e-02

Joint ci ratio: 9.500496e-02	ci left: 5.114319e-02	ci right 5.627700e-02	k: 1610	n:30000
Cons ci ratio: 1.870157e-01	ci left: 1.308242e-02	ci right 1.581280e-02	k: 432	n:30000
KS ci ratio: 3.876560e-02	ci left: 2.492472e-01	ci right 2.591338e-01	k: 7625	n:30000
TRPC6   30000 perm   7 sec   (4544 perm/sec)   p_kst 2.541667e-01   p_cons 1.440000e-02   p_joint 5.366667e-02

Joint ci ratio: 9.652272e-02	ci left: 3.768543e-02	ci right 4.153177e-02	k: 1583	n:40000
Cons ci ratio: 1.625812e-01	ci left: 1.315938e-02	ci right 1.551190e-02	k: 572	n:40000
KS ci ratio: 3.359198e-02	ci left: 2.496899e-01	ci right 2.582458e-01	k: 10158	n:40000
TRPC6   40000 perm   9 sec   (4260 perm/sec)   p_kst 2.539500e-01   p_cons 1.430000e-02   p_joint 3.957500e-02

Joint ci ratio: 9.327260e-02	ci left: 3.252633e-02	ci right 3.572806e-02	k: 1705	n:50000
Cons ci ratio: 1.428346e-01	ci left: 1.377912e-02	ci right 1.591775e-02	k: 741	n:50000
KS ci ratio: 2.999771e-02	ci left: 2.507461e-01	ci right 2.584024e-01	k: 12728	n:50000
TRPC6   50000 perm   12 sec   (4192 perm/sec)   p_kst 2.545600e-01   p_cons 1.482000e-02   p_joint 3.410000e-02

Joint ci ratio: 8.743133e-02	ci left: 3.099757e-02	ci right 3.384789e-02	k: 1944	n:60000
Cons ci ratio: 1.311695e-01	ci left: 1.370384e-02	ci right 1.564352e-02	k: 879	n:60000
KS ci ratio: 2.747066e-02	ci left: 2.498902e-01	ci right 2.568670e-01	k: 15202	n:60000
TRPC6   60000 perm   15 sec   (4126 perm/sec)   p_kst 2.533667e-01   p_cons 1.465000e-02   p_joint 3.240000e-02

Joint ci ratio: 7.831204e-02	ci left: 3.320220e-02	ci right 3.592227e-02	k: 2418	n:70000
Cons ci ratio: 1.211802e-01	ci left: 1.383533e-02	ci right 1.563379e-02	k: 1030	n:70000
KS ci ratio: 2.551462e-02	ci left: 2.489434e-01	ci right 2.553914e-01	k: 17651	n:70000
TRPC6   70000 perm   17 sec   (4062 perm/sec)   p_kst 2.521571e-01   p_cons 1.471429e-02   p_joint 3.454286e-02

Joint ci ratio: 8.055363e-02	ci left: 2.759066e-02	ci right 2.991868e-02	k: 2299	n:80000
Cons ci ratio: 1.133677e-01	ci left: 1.388957e-02	ci right 1.557089e-02	k: 1177	n:80000
KS ci ratio: 2.384677e-02	ci left: 2.494674e-01	ci right 2.555006e-01	k: 20198	n:80000
TRPC6   80000 perm   20 sec   (3997 perm/sec)   p_kst 2.524750e-01   p_cons 1.471250e-02   p_joint 2.873750e-02

Joint ci ratio: 7.661235e-02	ci left: 2.718266e-02	ci right 2.935900e-02	k: 2543	n:90000
Cons ci ratio: 1.070175e-01	ci left: 1.390221e-02	ci right 1.548485e-02	k: 1321	n:90000
KS ci ratio: 2.245907e-02	ci left: 2.500405e-01	ci right 2.557310e-01	k: 22759	n:90000
TRPC6   90000 perm   23 sec   (3936 perm/sec)   p_kst 2.528778e-01   p_cons 1.467778e-02   p_joint 2.825556e-02

Joint ci ratio: 7.228275e-02	ci left: 2.753632e-02	ci right 2.961114e-02	k: 2856	n:100000
Cons ci ratio: 1.007931e-01	ci left: 1.414844e-02	ci right 1.565988e-02	k: 1489	n:100000
KS ci ratio: 2.131551e-02	ci left: 2.500287e-01	ci right 2.554256e-01	k: 25272	n:100000
TRPC6   100000 perm   26 sec   (3878 perm/sec)   p_kst 2.527200e-01   p_cons 1.489000e-02   p_joint 2.856000e-02

Joint ci ratio: 7.139760e-02	ci left: 2.571957e-02	ci right 2.763277e-02	k: 2933	n:110000
Cons ci ratio: 9.646163e-02	ci left: 1.407694e-02	ci right 1.551245e-02	k: 1626	n:110000
KS ci ratio: 2.035406e-02	ci left: 2.495904e-01	ci right 2.547318e-01	k: 27737	n:110000
TRPC6   110000 perm   29 sec   (3822 perm/sec)   p_kst 2.521545e-01   p_cons 1.478182e-02   p_joint 2.666364e-02

Outputting figure to mutsig2_images.part000000000182/TRPC6.13_2848_110000_0.25215_0.014782_0.026664.png
                gene_name: TRPC6
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.016 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 13 percent done.
TRPM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.987348e-02	ci left: 1.862897e-01	ci right 2.018889e-01	k: 1940	n:10000
Cons ci ratio: 6.353627e-02	ci left: 2.668589e-01	ci right 2.844719e-01	k: 2756	n:10000
KS ci ratio: 1.059497e-01	ci left: 1.139852e-01	ci right 1.268368e-01	k: 1203	n:10000
TRPM3   10000 perm   2 sec   (4504 perm/sec)   p_kst 1.203000e-01   p_cons 2.756000e-01   p_joint 1.940000e-01

Joint ci ratio: 6.553325e-02	ci left: 1.467542e-01	ci right 1.567472e-01	k: 3034	n:20000
Cons ci ratio: 4.589145e-02	ci left: 2.611262e-01	ci right 2.734415e-01	k: 5345	n:20000
KS ci ratio: 7.228161e-02	ci left: 1.235468e-01	ci right 1.328616e-01	k: 2563	n:20000
TRPM3   20000 perm   5 sec   (4110 perm/sec)   p_kst 1.281500e-01   p_cons 2.672500e-01   p_joint 1.517000e-01

Outputting figure to mutsig2_images.part000000000182/TRPM3.12_5347_20000_0.12815_0.26725_0.1517.png
                gene_name: TRPM3
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 15 percent done.
TRIOBP
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.590890e-02	ci left: 2.526106e-01	ci right 2.699286e-01	k: 2612	n:10000
Cons ci ratio: 2.150889e-02	ci left: 7.602067e-01	ci right 7.768366e-01	k: 7686	n:10000
KS ci ratio: 8.591465e-02	ci left: 1.648463e-01	ci right 1.797451e-01	k: 1722	n:10000
TRIOBP   10000 perm   3 sec   (3919 perm/sec)   p_kst 1.722000e-01   p_cons 7.686000e-01   p_joint 2.612000e-01

Outputting figure to mutsig2_images.part000000000182/TRIOBP.10_7484_10000_0.1722_0.7686_0.2612.png
                gene_name: TRIOBP
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 16 percent done.
TRPV5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.608058e-02	ci left: 5.314728e-01	ci right 5.511031e-01	k: 5413	n:10000
Cons ci ratio: 7.000510e-02	ci left: 2.302732e-01	ci right 2.470793e-01	k: 2386	n:10000
KS ci ratio: 1.605409e-02	ci left: 8.493730e-01	ci right 8.632188e-01	k: 8564	n:10000
TRPV5   10000 perm   2 sec   (5106 perm/sec)   p_kst 8.564000e-01   p_cons 2.386000e-01   p_joint 5.413000e-01

Outputting figure to mutsig2_images.part000000000182/TRPV5.11_2250_10000_0.8564_0.2386_0.5413.png
                gene_name: TRPV5
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 18 percent done.
TRPV6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.069629e-02	ci left: 4.713638e-01	ci right 4.910472e-01	k: 4812	n:10000
KS ci ratio: 2.063072e-02	ci left: 7.748905e-01	ci right 7.911443e-01	k: 7831	n:10000
TRPV6   10000 perm   2 sec   (5413 perm/sec)   p_kst 7.831000e-01   p_cons 4.812000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRPV6.11_2238_10000_0.7831_0.4812_1.png
                gene_name: TRPV6
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
TRIM55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.340863e-02	ci left: 5.694520e-01	ci right 5.889019e-01	k: 5792	n:10000
Cons ci ratio: 2.505158e-02	ci left: 7.009962e-01	ci right 7.188814e-01	k: 7100	n:10000
KS ci ratio: 5.166009e-02	ci left: 3.558529e-01	ci right 3.748256e-01	k: 3653	n:10000
TRIM55   10000 perm   2 sec   (5330 perm/sec)   p_kst 3.653000e-01   p_cons 7.100000e-01   p_joint 5.792000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM55.10_1779_10000_0.3653_0.71_0.5792.png
                gene_name: TRIM55
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 21 percent done.
TRIP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.862726e-02	ci left: 2.374850e-01	ci right 2.544633e-01	k: 2459	n:10000
Cons ci ratio: 6.824099e-02	ci left: 2.395602e-01	ci right 2.565868e-01	k: 2480	n:10000
KS ci ratio: 8.285235e-02	ci left: 1.752679e-01	ci right 1.905173e-01	k: 1828	n:10000
TRIP11   10000 perm   2 sec   (4371 perm/sec)   p_kst 1.828000e-01   p_cons 2.480000e-01   p_joint 2.459000e-01

Outputting figure to mutsig2_images.part000000000182/TRIP11.10_6024_10000_0.1828_0.248_0.2459.png
                gene_name: TRIP11
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 22 percent done.
TRPM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.924902e-02	ci left: 4.894516e-01	ci right 5.091488e-01	k: 4993	n:10000
Cons ci ratio: 3.150556e-02	ci left: 5.978492e-01	ci right 6.170882e-01	k: 6075	n:10000
KS ci ratio: 6.006440e-02	ci left: 2.896400e-01	ci right 3.076774e-01	k: 2986	n:10000
TRPM2   10000 perm   2 sec   (4837 perm/sec)   p_kst 2.986000e-01   p_cons 6.075000e-01   p_joint 4.993000e-01

Outputting figure to mutsig2_images.part000000000182/TRPM2.10_4640_10000_0.2986_0.6075_0.4993.png
                gene_name: TRPM2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 24 percent done.
TRPM8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.496038e-02	ci left: 7.025094e-01	ci right 7.203673e-01	k: 7115	n:10000
KS ci ratio: 9.280476e-03	ci left: 9.424271e-01	ci right 9.513103e-01	k: 9470	n:10000
TRPM8   10000 perm   2 sec   (5104 perm/sec)   p_kst 9.470000e-01   p_cons 7.115000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRPM8.10_3411_10000_0.947_0.7115_1.png
                gene_name: TRPM8
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 25 percent done.
TRPC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.489076e-01	ci left: 2.118344e-02	ci right 2.729802e-02	k: 241	n:10000
Cons ci ratio: 4.267935e-02	ci left: 4.476992e-01	ci right 4.673255e-01	k: 4575	n:10000
KS ci ratio: 3.556745e-01	ci left: 9.867770e-03	ci right 1.422343e-02	k: 119	n:10000
TRPC7   10000 perm   2 sec   (5202 perm/sec)   p_kst 1.190000e-02   p_cons 4.575000e-01   p_joint 2.410000e-02

Joint ci ratio: 1.247431e-01	ci left: 4.410792e-02	ci right 5.002466e-02	k: 940	n:20000
Cons ci ratio: 3.040425e-02	ci left: 4.469322e-01	ci right 4.607812e-01	k: 9077	n:20000
KS ci ratio: 2.520380e-01	ci left: 1.044346e-02	ci right 1.350089e-02	k: 238	n:20000
TRPC7   20000 perm   4 sec   (4656 perm/sec)   p_kst 1.190000e-02   p_cons 4.538500e-01   p_joint 4.700000e-02

Joint ci ratio: 1.148169e-01	ci left: 3.524875e-02	ci right 3.957476e-02	k: 1121	n:30000
Cons ci ratio: 2.476150e-02	ci left: 4.494861e-01	ci right 4.607892e-01	k: 13654	n:30000
KS ci ratio: 2.086053e-01	ci left: 1.041914e-02	ci right 1.287680e-02	k: 348	n:30000
TRPC7   30000 perm   7 sec   (4435 perm/sec)   p_kst 1.160000e-02   p_cons 4.551333e-01   p_joint 3.736667e-02

Joint ci ratio: 1.448697e-01	ci left: 1.667146e-02	ci right 1.929918e-02	k: 718	n:40000
Cons ci ratio: 2.173457e-02	ci left: 4.435926e-01	ci right 4.533649e-01	k: 17939	n:40000
KS ci ratio: 1.847870e-01	ci left: 1.009638e-02	ci right 1.217550e-02	k: 444	n:40000
TRPC7   40000 perm   9 sec   (4334 perm/sec)   p_kst 1.110000e-02   p_cons 4.484750e-01   p_joint 1.795000e-02

Joint ci ratio: 1.152345e-01	ci left: 2.131504e-02	ci right 2.394078e-02	k: 1130	n:50000
Cons ci ratio: 1.936703e-02	ci left: 4.459720e-01	ci right 4.547137e-01	k: 22517	n:50000
KS ci ratio: 1.629616e-01	ci left: 1.050712e-02	ci right 1.239024e-02	k: 571	n:50000
TRPC7   50000 perm   12 sec   (4162 perm/sec)   p_kst 1.142000e-02   p_cons 4.503400e-01   p_joint 2.260000e-02

Joint ci ratio: 9.746891e-02	ci left: 2.496908e-02	ci right 2.754368e-02	k: 1574	n:60000
Cons ci ratio: 1.765378e-02	ci left: 4.470792e-01	ci right 4.550588e-01	k: 27064	n:60000
KS ci ratio: 1.492478e-01	ci left: 1.051776e-02	ci right 1.222999e-02	k: 681	n:60000
TRPC7   60000 perm   15 sec   (4100 perm/sec)   p_kst 1.135000e-02   p_cons 4.510667e-01   p_joint 2.623333e-02

Joint ci ratio: 9.968245e-02	ci left: 2.053580e-02	ci right 2.270411e-02	k: 1512	n:70000
Cons ci ratio: 1.631822e-02	ci left: 4.481653e-01	ci right 4.555530e-01	k: 31630	n:70000
KS ci ratio: 1.366787e-01	ci left: 1.081993e-02	ci right 1.242094e-02	k: 812	n:70000
TRPC7   70000 perm   17 sec   (4033 perm/sec)   p_kst 1.160000e-02   p_cons 4.518571e-01   p_joint 2.160000e-02

Joint ci ratio: 9.022756e-02	ci left: 2.200899e-02	ci right 2.410080e-02	k: 1843	n:80000
Cons ci ratio: 1.526803e-02	ci left: 4.482845e-01	ci right 4.551940e-01	k: 36139	n:80000
KS ci ratio: 1.277918e-01	ci left: 1.088162e-02	ci right 1.237911e-02	k: 929	n:80000
TRPC7   80000 perm   20 sec   (3969 perm/sec)   p_kst 1.161250e-02   p_cons 4.517375e-01   p_joint 2.303750e-02

Joint ci ratio: 8.958008e-02	ci left: 1.989926e-02	ci right 2.177624e-02	k: 1874	n:90000
Cons ci ratio: 1.462547e-02	ci left: 4.406281e-01	ci right 4.471311e-01	k: 39949	n:90000
KS ci ratio: 1.209079e-01	ci left: 1.084599e-02	ci right 1.225242e-02	k: 1038	n:90000
TRPC7   90000 perm   23 sec   (3910 perm/sec)   p_kst 1.153333e-02   p_cons 4.438778e-01   p_joint 2.082222e-02

Joint ci ratio: 8.463806e-02	ci left: 2.011043e-02	ci right 2.189750e-02	k: 2099	n:100000
Cons ci ratio: 1.386844e-02	ci left: 4.410271e-01	ci right 4.471961e-01	k: 44411	n:100000
KS ci ratio: 1.149779e-01	ci left: 1.082894e-02	ci right 1.215962e-02	k: 1148	n:100000
TRPC7   100000 perm   26 sec   (3852 perm/sec)   p_kst 1.148000e-02   p_cons 4.441100e-01   p_joint 2.099000e-02

Joint ci ratio: 7.822710e-02	ci left: 2.144440e-02	ci right 2.319909e-02	k: 2454	n:110000
Cons ci ratio: 1.323137e-02	ci left: 4.408609e-01	ci right 4.467420e-01	k: 48818	n:110000
KS ci ratio: 1.101085e-01	ci left: 1.076332e-02	ci right 1.202628e-02	k: 1252	n:110000
TRPC7   110000 perm   29 sec   (3792 perm/sec)   p_kst 1.138182e-02   p_cons 4.438000e-01   p_joint 2.230909e-02

Joint ci ratio: 7.303795e-02	ci left: 2.258479e-02	ci right 2.430501e-02	k: 2812	n:120000
Cons ci ratio: 1.266851e-02	ci left: 4.409695e-01	ci right 4.465999e-01	k: 53254	n:120000
KS ci ratio: 1.059280e-01	ci left: 1.068528e-02	ci right 1.188851e-02	k: 1353	n:120000
TRPC7   120000 perm   32 sec   (3735 perm/sec)   p_kst 1.127500e-02   p_cons 4.437833e-01   p_joint 2.343333e-02

Joint ci ratio: 7.874117e-02	ci left: 1.797053e-02	ci right 1.945105e-02	k: 2431	n:130000
Cons ci ratio: 1.217339e-02	ci left: 4.410044e-01	ci right 4.464135e-01	k: 57682	n:130000
KS ci ratio: 9.913432e-02	ci left: 1.129509e-02	ci right 1.248067e-02	k: 1544	n:130000
TRPC7   130000 perm   35 sec   (3683 perm/sec)   p_kst 1.187692e-02   p_cons 4.437077e-01   p_joint 1.870000e-02

Outputting figure to mutsig2_images.part000000000182/TRPC7.9_2637_130000_0.011877_0.44371_0.0187.png
                gene_name: TRPC7
               theta_stop: 0.099 
                    nperm: 130000 
                     p_ks: 0.012 
        ci_ks_bounds_left: 0.011 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.019 

Current progress: 27 percent done.
TRPM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.261065e-02	ci left: 4.484977e-01	ci right 4.681266e-01	k: 4583	n:10000
Cons ci ratio: 2.754004e-02	ci left: 6.601821e-01	ci right 6.787191e-01	k: 6695	n:10000
KS ci ratio: 6.007874e-02	ci left: 2.895409e-01	ci right 3.075765e-01	k: 2985	n:10000
TRPM1   10000 perm   2 sec   (4389 perm/sec)   p_kst 2.985000e-01   p_cons 6.695000e-01   p_joint 4.583000e-01

Outputting figure to mutsig2_images.part000000000182/TRPM1.9_4916_10000_0.2985_0.6695_0.4583.png
                gene_name: TRPM1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 28 percent done.
TRIM42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.052390e-02	ci left: 1.507053e-01	ci right 1.650946e-01	k: 1578	n:10000
Cons ci ratio: 1.173999e-01	ci left: 9.438193e-02	ci right 1.062521e-01	k: 1002	n:10000
KS ci ratio: 7.568707e-02	ci left: 2.034324e-01	ci right 2.195360e-01	k: 2114	n:10000
TRIM42   10000 perm   2 sec   (5127 perm/sec)   p_kst 2.114000e-01   p_cons 1.002000e-01   p_joint 1.578000e-01

Joint ci ratio: 6.852811e-02	ci left: 1.357607e-01	ci right 1.454440e-01	k: 2811	n:20000
Cons ci ratio: 7.808702e-02	ci left: 1.075135e-01	ci right 1.162997e-01	k: 2237	n:20000
KS ci ratio: 5.466036e-02	ci left: 1.989284e-01	ci right 2.101576e-01	k: 4090	n:20000
TRIM42   20000 perm   4 sec   (4478 perm/sec)   p_kst 2.045000e-01   p_cons 1.118500e-01   p_joint 1.405500e-01

Outputting figure to mutsig2_images.part000000000182/TRIM42.8_2192_20000_0.2045_0.11185_0.14055.png
                gene_name: TRIM42
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 30 percent done.
TRIM6-TRIM34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.433266e-02	ci left: 4.289432e-01	ci right 4.484926e-01	k: 4387	n:10000
Cons ci ratio: 7.570976e-02	ci left: 2.033338e-01	ci right 2.194347e-01	k: 2113	n:10000
KS ci ratio: 4.283441e-02	ci left: 4.459028e-01	ci right 4.655230e-01	k: 4557	n:10000
TRIM6-TRIM34   10000 perm   2 sec   (4917 perm/sec)   p_kst 4.557000e-01   p_cons 2.113000e-01   p_joint 4.387000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM6-TRIM34.8_2585_10000_0.4557_0.2113_0.4387.png
                gene_name: TRIM6-TRIM34
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 31 percent done.
TRPC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.165997e-02	ci left: 7.576765e-01	ci right 7.743683e-01	k: 7661	n:10000
Cons ci ratio: 5.655754e-02	ci left: 3.152266e-01	ci right 3.336757e-01	k: 3244	n:10000
KS ci ratio: 2.477813e-02	ci left: 7.055362e-01	ci right 7.233387e-01	k: 7145	n:10000
TRPC3   10000 perm   2 sec   (5319 perm/sec)   p_kst 7.145000e-01   p_cons 3.244000e-01   p_joint 7.661000e-01

Outputting figure to mutsig2_images.part000000000182/TRPC3.8_2814_10000_0.7145_0.3244_0.7661.png
                gene_name: TRPC3
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 33 percent done.
TRIM44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.114669e-02	ci left: 1.814664e-01	ci right 1.969151e-01	k: 1891	n:10000
Cons ci ratio: 1.453474e-01	ci left: 6.285242e-02	ci right 7.280114e-02	k: 677	n:10000
KS ci ratio: 5.232375e-02	ci left: 3.499877e-01	ci right 3.688943e-01	k: 3594	n:10000
TRIM44   10000 perm   2 sec   (5343 perm/sec)   p_kst 3.594000e-01   p_cons 6.770000e-02   p_joint 1.891000e-01

Joint ci ratio: 6.835849e-02	ci left: 1.363520e-01	ci right 1.460525e-01	k: 2823	n:20000
Cons ci ratio: 1.109456e-01	ci left: 5.548160e-02	ci right 6.204742e-02	k: 1174	n:20000
KS ci ratio: 3.781568e-02	ci left: 3.428393e-01	ci right 3.561045e-01	k: 6989	n:20000
TRIM44   20000 perm   4 sec   (4955 perm/sec)   p_kst 3.494500e-01   p_cons 5.870000e-02   p_joint 1.411500e-01

Joint ci ratio: 5.382542e-02	ci left: 1.461746e-01	ci right 1.542933e-01	k: 4506	n:30000
Cons ci ratio: 9.005926e-02	ci left: 5.671872e-02	ci right 6.210033e-02	k: 1781	n:30000
KS ci ratio: 3.079730e-02	ci left: 3.452318e-01	ci right 3.560638e-01	k: 10519	n:30000
TRIM44   30000 perm   6 sec   (4810 perm/sec)   p_kst 3.506333e-01   p_cons 5.936667e-02   p_joint 1.502000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM44.7_1055_30000_0.35063_0.059367_0.1502.png
                gene_name: TRIM44
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.15 

Current progress: 34 percent done.
TRO
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.386771e-02	ci left: 4.341296e-01	ci right 4.537031e-01	k: 4439	n:10000
Cons ci ratio: 1.242968e-02	ci left: 9.028849e-01	ci right 9.142758e-01	k: 9087	n:10000
KS ci ratio: 5.966541e-02	ci left: 2.924153e-01	ci right 3.105005e-01	k: 3014	n:10000
TRO   10000 perm   2 sec   (4896 perm/sec)   p_kst 3.014000e-01   p_cons 9.087000e-01   p_joint 4.439000e-01

Outputting figure to mutsig2_images.part000000000182/TRO.7_4479_10000_0.3014_0.9087_0.4439.png
                gene_name: TRO
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 36 percent done.
TRIM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.739590e-02	ci left: 1.325692e-01	ci right 1.462416e-01	k: 1393	n:10000
Cons ci ratio: 1.098228e-01	ci left: 1.067607e-01	ci right 1.192658e-01	k: 1129	n:10000
KS ci ratio: 7.698126e-02	ci left: 1.979127e-01	ci right 2.138590e-01	k: 2058	n:10000
TRIM6   10000 perm   2 sec   (5980 perm/sec)   p_kst 2.058000e-01   p_cons 1.129000e-01   p_joint 1.393000e-01

Joint ci ratio: 6.494151e-02	ci left: 1.490725e-01	ci right 1.591283e-01	k: 3081	n:20000
Cons ci ratio: 7.970010e-02	ci left: 1.035833e-01	ci right 1.122311e-01	k: 2157	n:20000
KS ci ratio: 5.409570e-02	ci left: 2.022937e-01	ci right 2.135913e-01	k: 4158	n:20000
TRIM6   20000 perm   4 sec   (5371 perm/sec)   p_kst 2.079000e-01   p_cons 1.078500e-01   p_joint 1.540500e-01

Outputting figure to mutsig2_images.part000000000182/TRIM6.6_1583_20000_0.2079_0.10785_0.15405.png
                gene_name: TRIM6
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 37 percent done.
TRIM9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.266032e-02	ci left: 8.997006e-01	ci right 9.112619e-01	k: 9056	n:10000
KS ci ratio: 1.881975e-02	ci left: 8.049125e-01	ci right 8.203049e-01	k: 8127	n:10000
TRIM9   10000 perm   2 sec   (5372 perm/sec)   p_kst 8.127000e-01   p_cons 9.056000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRIM9.6_2223_10000_0.8127_0.9056_1.png
                gene_name: TRIM9
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
TROVE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.207474e-02	ci left: 3.521745e-01	ci right 3.711061e-01	k: 3616	n:10000
KS ci ratio: 2.578935e-02	ci left: 6.887938e-01	ci right 7.068908e-01	k: 6979	n:10000
TROVE2   10000 perm   2 sec   (6007 perm/sec)   p_kst 6.979000e-01   p_cons 3.616000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TROVE2.6_1706_10000_0.6979_0.3616_1.png
                gene_name: TROVE2
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
TRPC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.964965e-02	ci left: 3.743530e-01	ci right 3.935147e-01	k: 3839	n:10000
Cons ci ratio: 6.177028e-02	ci left: 2.781469e-01	ci right 2.959773e-01	k: 2870	n:10000
KS ci ratio: 5.804816e-02	ci left: 3.040161e-01	ci right 3.222929e-01	k: 3131	n:10000
TRPC1   10000 perm   2 sec   (5438 perm/sec)   p_kst 3.131000e-01   p_cons 2.870000e-01   p_joint 3.839000e-01

Outputting figure to mutsig2_images.part000000000182/TRPC1.6_2328_10000_0.3131_0.287_0.3839.png
                gene_name: TRPC1
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 42 percent done.
TRPC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.080366e-02	ci left: 2.845862e-01	ci right 3.025342e-01	k: 2935	n:10000
Cons ci ratio: 8.931779e-02	ci left: 1.542387e-01	ci right 1.687591e-01	k: 1614	n:10000
KS ci ratio: 6.920559e-02	ci left: 2.344220e-01	ci right 2.513280e-01	k: 2428	n:10000
TRPC5   10000 perm   2 sec   (5295 perm/sec)   p_kst 2.428000e-01   p_cons 1.614000e-01   p_joint 2.935000e-01

Outputting figure to mutsig2_images.part000000000182/TRPC5.6_2962_10000_0.2428_0.1614_0.2935.png
                gene_name: TRPC5
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 43 percent done.
TRPV2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.209097e-02	ci left: 4.545866e-01	ci right 4.742341e-01	k: 4644	n:10000
Cons ci ratio: 1.603451e-02	ci left: 8.496789e-01	ci right 8.635127e-01	k: 8567	n:10000
KS ci ratio: 7.070558e-02	ci left: 2.267179e-01	ci right 2.434367e-01	k: 2350	n:10000
TRPV2   10000 perm   2 sec   (5231 perm/sec)   p_kst 2.350000e-01   p_cons 8.567000e-01   p_joint 4.644000e-01

Outputting figure to mutsig2_images.part000000000182/TRPV2.6_2351_10000_0.235_0.8567_0.4644.png
                gene_name: TRPV2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 45 percent done.
TRIM45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.417707e-02	ci left: 2.101378e-01	ci right 2.264266e-01	k: 2182	n:10000
Cons ci ratio: 1.038047e-01	ci left: 1.182847e-01	ci right 1.313348e-01	k: 1247	n:10000
KS ci ratio: 5.168237e-02	ci left: 3.556540e-01	ci right 3.746246e-01	k: 3651	n:10000
TRIM45   10000 perm   2 sec   (5770 perm/sec)   p_kst 3.651000e-01   p_cons 1.247000e-01   p_joint 2.182000e-01

Joint ci ratio: 4.801600e-02	ci left: 2.439114e-01	ci right 2.559614e-01	k: 4998	n:20000
Cons ci ratio: 7.080039e-02	ci left: 1.281747e-01	ci right 1.376323e-01	k: 2657	n:20000
KS ci ratio: 3.730563e-02	ci left: 3.490119e-01	ci right 3.623301e-01	k: 7113	n:20000
TRIM45   20000 perm   4 sec   (5129 perm/sec)   p_kst 3.556500e-01   p_cons 1.328500e-01   p_joint 2.499000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM45.5_1767_20000_0.35565_0.13285_0.2499.png
                gene_name: TRIM45
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 46 percent done.
TRIM69
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.165721e-01	ci left: 1.270967e-02	ci right 1.757875e-02	k: 150	n:10000
Cons ci ratio: 2.963012e-01	ci left: 1.465041e-02	ci right 1.983629e-02	k: 171	n:10000
KS ci ratio: 8.726408e-02	ci left: 1.605234e-01	ci right 1.752706e-01	k: 1678	n:10000
TRIM69   10000 perm   2 sec   (5924 perm/sec)   p_kst 1.678000e-01   p_cons 1.710000e-02   p_joint 1.500000e-02

Joint ci ratio: 1.676740e-01	ci left: 2.436600e-02	ci right 2.887305e-02	k: 531	n:20000
Cons ci ratio: 2.064886e-01	ci left: 1.587048e-02	ci right 1.957164e-02	k: 353	n:20000
KS ci ratio: 6.013080e-02	ci left: 1.699541e-01	ci right 1.805404e-01	k: 3504	n:20000
TRIM69   20000 perm   4 sec   (5438 perm/sec)   p_kst 1.752000e-01   p_cons 1.765000e-02   p_joint 2.655000e-02

Joint ci ratio: 1.275976e-01	ci left: 2.855075e-02	ci right 3.247421e-02	k: 914	n:30000
Cons ci ratio: 1.674783e-01	ci left: 1.642981e-02	ci right 1.946457e-02	k: 537	n:30000
KS ci ratio: 4.913366e-02	ci left: 1.707153e-01	ci right 1.793477e-01	k: 5250	n:30000
TRIM69   30000 perm   6 sec   (5231 perm/sec)   p_kst 1.750000e-01   p_cons 1.790000e-02   p_joint 3.046667e-02

Joint ci ratio: 1.098089e-01	ci left: 2.917713e-02	ci right 3.259143e-02	k: 1234	n:40000
Cons ci ratio: 1.461163e-01	ci left: 1.638221e-02	ci right 1.898849e-02	k: 706	n:40000
KS ci ratio: 4.269284e-02	ci left: 1.703456e-01	ci right 1.778017e-01	k: 6962	n:40000
TRIM69   40000 perm   8 sec   (5069 perm/sec)   p_kst 1.740500e-01   p_cons 1.765000e-02   p_joint 3.085000e-02

Joint ci ratio: 1.121771e-01	ci left: 2.250111e-02	ci right 2.519456e-02	k: 1191	n:50000
Cons ci ratio: 1.320471e-01	ci left: 1.617522e-02	ci right 1.848131e-02	k: 865	n:50000
KS ci ratio: 3.817972e-02	ci left: 1.707853e-01	ci right 1.774526e-01	k: 8705	n:50000
TRIM69   50000 perm   10 sec   (4940 perm/sec)   p_kst 1.741000e-01   p_cons 1.730000e-02   p_joint 2.382000e-02

Joint ci ratio: 6.828357e-02	ci left: 5.028601e-02	ci right 5.385748e-02	k: 3123	n:60000
Cons ci ratio: 1.222410e-01	ci left: 1.581905e-02	ci right 1.789473e-02	k: 1010	n:60000
KS ci ratio: 3.490620e-02	ci left: 1.706430e-01	ci right 1.767219e-01	k: 10420	n:60000
TRIM69   60000 perm   12 sec   (4837 perm/sec)   p_kst 1.736667e-01   p_cons 1.683333e-02   p_joint 5.205000e-02

Joint ci ratio: 6.970323e-02	ci left: 4.171977e-02	ci right 4.474681e-02	k: 3025	n:70000
Cons ci ratio: 1.142369e-01	ci left: 1.559702e-02	ci right 1.750050e-02	k: 1157	n:70000
KS ci ratio: 3.226203e-02	ci left: 1.713541e-01	ci right 1.769872e-01	k: 12191	n:70000
TRIM69   70000 perm   15 sec   (4744 perm/sec)   p_kst 1.741571e-01   p_cons 1.652857e-02   p_joint 4.321429e-02

Joint ci ratio: 6.919000e-02	ci left: 3.723873e-02	ci right 3.991987e-02	k: 3085	n:80000
Cons ci ratio: 1.063870e-01	ci left: 1.579898e-02	ci right 1.758632e-02	k: 1334	n:80000
KS ci ratio: 3.020295e-02	ci left: 1.713040e-01	ci right 1.765697e-01	k: 13914	n:80000
TRIM69   80000 perm   17 sec   (4591 perm/sec)   p_kst 1.739250e-01   p_cons 1.667500e-02   p_joint 3.856250e-02

Joint ci ratio: 6.647512e-02	ci left: 3.596203e-02	ci right 3.844570e-02	k: 3347	n:90000
Cons ci ratio: 1.008461e-01	ci left: 1.567780e-02	ci right 1.735357e-02	k: 1485	n:90000
KS ci ratio: 2.854781e-02	ci left: 1.707327e-01	ci right 1.756884e-01	k: 15588	n:90000
TRIM69   90000 perm   20 sec   (4513 perm/sec)   p_kst 1.732000e-01   p_cons 1.650000e-02   p_joint 3.718889e-02

Joint ci ratio: 6.839951e-02	ci left: 3.071122e-02	ci right 3.289604e-02	k: 3179	n:100000
Cons ci ratio: 9.608941e-02	ci left: 1.558281e-02	ci right 1.716542e-02	k: 1636	n:100000
KS ci ratio: 2.682483e-02	ci left: 1.736043e-01	ci right 1.783345e-01	k: 17596	n:100000
TRIM69   100000 perm   23 sec   (4438 perm/sec)   p_kst 1.759600e-01   p_cons 1.636000e-02   p_joint 3.179000e-02

Outputting figure to mutsig2_images.part000000000182/TRIM69.5_1531_100000_0.17596_0.01636_0.03179.png
                gene_name: TRIM69
               theta_stop: 0.096 
                    nperm: 100000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.033 

Current progress: 48 percent done.
TRIP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.046551e-02	ci left: 1.840255e-01	ci right 1.995545e-01	k: 1917	n:10000
Cons ci ratio: 3.239796e-02	ci left: 5.843990e-01	ci right 6.037461e-01	k: 5941	n:10000
KS ci ratio: 1.071161e-01	ci left: 1.117389e-01	ci right 1.244845e-01	k: 1180	n:10000
TRIP4   10000 perm   2 sec   (6189 perm/sec)   p_kst 1.180000e-01   p_cons 5.941000e-01   p_joint 1.917000e-01

Joint ci ratio: 5.582930e-02	ci left: 1.921997e-01	ci right 2.032883e-01	k: 3954	n:20000
Cons ci ratio: 2.238655e-02	ci left: 5.983857e-01	ci right 6.119837e-01	k: 12104	n:20000
KS ci ratio: 7.710129e-02	ci left: 1.100200e-01	ci right 1.188924e-01	k: 2288	n:20000
TRIP4   20000 perm   4 sec   (5517 perm/sec)   p_kst 1.144000e-01   p_cons 6.052000e-01   p_joint 1.977000e-01

Outputting figure to mutsig2_images.part000000000182/TRIP4.5_1798_20000_0.1144_0.6052_0.1977.png
                gene_name: TRIP4
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 49 percent done.
TRIM46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.271402e-02	ci left: 1.757597e-01	ci right 1.910252e-01	k: 1833	n:10000
Cons ci ratio: 2.061291e-01	ci left: 3.129396e-02	ci right 3.858023e-02	k: 348	n:10000
KS ci ratio: 7.363547e-03	ci left: 9.622595e-01	ci right 9.694658e-01	k: 9660	n:10000
TRIM46   10000 perm   2 sec   (5719 perm/sec)   p_kst 9.660000e-01   p_cons 3.480000e-02   p_joint 1.833000e-01

Joint ci ratio: 4.944033e-02	ci left: 2.332019e-01	ci right 2.450740e-01	k: 4782	n:20000
Cons ci ratio: 1.556167e-01	ci left: 2.835269e-02	ci right 3.318501e-02	k: 614	n:20000
KS ci ratio: 5.297710e-03	ci left: 9.621525e-01	ci right 9.673113e-01	k: 19296	n:20000
TRIM46   20000 perm   4 sec   (5153 perm/sec)   p_kst 9.648000e-01   p_cons 3.070000e-02   p_joint 2.391000e-01

Joint ci ratio: 4.162143e-02	ci left: 2.234278e-01	ci right 2.329582e-01	k: 6845	n:30000
Cons ci ratio: 1.253543e-01	ci left: 2.958465e-02	ci right 3.357342e-02	k: 946	n:30000
KS ci ratio: 4.394181e-03	ci left: 9.615215e-01	ci right 9.657881e-01	k: 28911	n:30000
TRIM46   30000 perm   6 sec   (4938 perm/sec)   p_kst 9.637000e-01   p_cons 3.153333e-02   p_joint 2.281667e-01

Joint ci ratio: 3.688926e-02	ci left: 2.160726e-01	ci right 2.242181e-01	k: 8805	n:40000
Cons ci ratio: 1.093529e-01	ci left: 2.942048e-02	ci right 3.284804e-02	k: 1244	n:40000
KS ci ratio: 3.796940e-03	ci left: 9.619742e-01	ci right 9.656580e-01	k: 38554	n:40000
TRIM46   40000 perm   8 sec   (4782 perm/sec)   p_kst 9.638500e-01   p_cons 3.110000e-02   p_joint 2.201250e-01

Joint ci ratio: 3.492826e-02	ci left: 1.976935e-01	ci right 2.047413e-01	k: 10060	n:50000
Cons ci ratio: 9.480808e-02	ci left: 3.149045e-02	ci right 3.464406e-02	k: 1652	n:50000
KS ci ratio: 3.389549e-03	ci left: 9.623095e-01	ci right 9.655963e-01	k: 48199	n:50000
TRIM46   50000 perm   11 sec   (4674 perm/sec)   p_kst 9.639800e-01   p_cons 3.304000e-02   p_joint 2.012000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM46.4_2320_50000_0.96398_0.03304_0.2012.png
                gene_name: TRIM46
               theta_stop: 0.095 
                    nperm: 50000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.033 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.035 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.20 

Current progress: 51 percent done.
TRIM60
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.079719e-02	ci left: 1.499203e-01	ci right 1.642801e-01	k: 1570	n:10000
Cons ci ratio: 3.021896e-02	ci left: 6.176367e-01	ci right 6.366892e-01	k: 6272	n:10000
KS ci ratio: 1.516850e-01	ci left: 5.783363e-02	ci right 6.742310e-02	k: 625	n:10000
TRIM60   10000 perm   2 sec   (6020 perm/sec)   p_kst 6.250000e-02   p_cons 6.272000e-01   p_joint 1.570000e-01

Joint ci ratio: 6.301864e-02	ci left: 1.569674e-01	ci right 1.672311e-01	k: 3241	n:20000
Cons ci ratio: 2.115028e-02	ci left: 6.252725e-01	ci right 6.386891e-01	k: 12640	n:20000
KS ci ratio: 1.068959e-01	ci left: 5.962273e-02	ci right 6.640500e-02	k: 1259	n:20000
TRIM60   20000 perm   4 sec   (5372 perm/sec)   p_kst 6.295000e-02   p_cons 6.320000e-01   p_joint 1.620500e-01

Joint ci ratio: 5.834134e-02	ci left: 1.269708e-01	ci right 1.346342e-01	k: 3923	n:30000
Cons ci ratio: 1.664593e-02	ci left: 6.435013e-01	ci right 6.543365e-01	k: 19468	n:30000
KS ci ratio: 8.848614e-02	ci left: 5.867675e-02	ci right 6.414190e-02	k: 1841	n:30000
TRIM60   30000 perm   6 sec   (5131 perm/sec)   p_kst 6.136667e-02   p_cons 6.489333e-01   p_joint 1.307667e-01

Outputting figure to mutsig2_images.part000000000182/TRIM60.4_1420_30000_0.061367_0.64893_0.13077.png
                gene_name: TRIM60
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.059 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 52 percent done.
TRIM62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.813143e-02	ci left: 2.401532e-01	ci right 2.571935e-01	k: 2486	n:10000
Cons ci ratio: 8.192190e-02	ci left: 1.786127e-01	ci right 1.939705e-01	k: 1862	n:10000
KS ci ratio: 5.112967e-02	ci left: 3.606257e-01	ci right 3.796501e-01	k: 3701	n:10000
TRIM62   10000 perm   2 sec   (6337 perm/sec)   p_kst 3.701000e-01   p_cons 1.862000e-01   p_joint 2.486000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM62.4_1448_10000_0.3701_0.1862_0.2486.png
                gene_name: TRIM62
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 54 percent done.
TRIML1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.251109e-02	ci left: 7.434132e-01	ci right 7.604398e-01	k: 7520	n:10000
Cons ci ratio: 2.992891e-02	ci left: 6.221590e-01	ci right 6.411643e-01	k: 6317	n:10000
KS ci ratio: 3.722914e-02	ci left: 5.158568e-01	ci right 5.355282e-01	k: 5257	n:10000
TRIML1   10000 perm   2 sec   (5783 perm/sec)   p_kst 5.257000e-01   p_cons 6.317000e-01   p_joint 7.520000e-01

Outputting figure to mutsig2_images.part000000000182/TRIML1.4_1431_10000_0.5257_0.6317_0.752.png
                gene_name: TRIML1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 55 percent done.
TRIML2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.891238e-02	ci left: 8.033895e-01	ci right 8.188289e-01	k: 8112	n:10000
KS ci ratio: 1.568038e-02	ci left: 8.551867e-01	ci right 8.688017e-01	k: 8621	n:10000
TRIML2   10000 perm   2 sec   (6095 perm/sec)   p_kst 8.621000e-01   p_cons 8.112000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRIML2.4_1192_10000_0.8621_0.8112_1.png
                gene_name: TRIML2
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
TRIT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.402025e-01	ci left: 6.739585e-02	ci right 7.765485e-02	k: 724	n:10000
Cons ci ratio: 1.500802e-02	ci left: 8.654978e-01	ci right 8.786846e-01	k: 8722	n:10000
KS ci ratio: 2.169949e-01	ci left: 2.816365e-02	ci right 3.511272e-02	k: 315	n:10000
TRIT1   10000 perm   2 sec   (5983 perm/sec)   p_kst 3.150000e-02   p_cons 8.722000e-01   p_joint 7.240000e-02

Joint ci ratio: 8.394926e-02	ci left: 9.415843e-02	ci right 1.024588e-01	k: 1965	n:20000
Cons ci ratio: 1.044411e-02	ci left: 8.710479e-01	ci right 8.802426e-01	k: 17514	n:20000
KS ci ratio: 1.574756e-01	ci left: 2.767935e-02	ci right 3.245857e-02	k: 600	n:20000
TRIT1   20000 perm   4 sec   (5342 perm/sec)   p_kst 3.000000e-02   p_cons 8.757000e-01   p_joint 9.825000e-02

Joint ci ratio: 7.629990e-02	ci left: 7.777290e-02	ci right 8.397522e-02	k: 2425	n:30000
Cons ci ratio: 8.523384e-03	ci left: 8.720148e-01	ci right 8.795122e-01	k: 26274	n:30000
KS ci ratio: 1.285426e-01	ci left: 2.813091e-02	ci right 3.202747e-02	k: 901	n:30000
TRIT1   30000 perm   6 sec   (5124 perm/sec)   p_kst 3.003333e-02   p_cons 8.758000e-01   p_joint 8.083333e-02

Joint ci ratio: 6.244738e-02	ci left: 8.686775e-02	ci right 9.249198e-02	k: 3586	n:40000
Cons ci ratio: 7.406768e-03	ci left: 8.717698e-01	ci right 8.782756e-01	k: 35002	n:40000
KS ci ratio: 1.109732e-01	ci left: 2.856889e-02	ci right 3.194977e-02	k: 1209	n:40000
TRIT1   40000 perm   8 sec   (4964 perm/sec)   p_kst 3.022500e-02   p_cons 8.750500e-01   p_joint 8.965000e-02

Joint ci ratio: 5.776275e-02	ci left: 8.189861e-02	ci right 8.678977e-02	k: 4216	n:50000
Cons ci ratio: 6.632926e-03	ci left: 8.718472e-01	ci right 8.776692e-01	k: 43739	n:50000
KS ci ratio: 9.903846e-02	ci left: 2.887341e-02	ci right 3.190143e-02	k: 1518	n:50000
TRIT1   50000 perm   10 sec   (4841 perm/sec)   p_kst 3.036000e-02   p_cons 8.747800e-01   p_joint 8.432000e-02

Outputting figure to mutsig2_images.part000000000182/TRIT1.4_1448_50000_0.03036_0.87478_0.08432.png
                gene_name: TRIT1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.087 

Current progress: 58 percent done.
TRMT5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.713937e-02	ci left: 1.609163e-01	ci right 1.756775e-01	k: 1682	n:10000
Cons ci ratio: 2.506374e-02	ci left: 7.007944e-01	ci right 7.186833e-01	k: 7098	n:10000
KS ci ratio: 1.138976e-01	ci left: 9.983694e-02	ci right 1.119937e-01	k: 1058	n:10000
TRMT5   10000 perm   2 sec   (5885 perm/sec)   p_kst 1.058000e-01   p_cons 7.098000e-01   p_joint 1.682000e-01

Joint ci ratio: 5.939252e-02	ci left: 1.735114e-01	ci right 1.841821e-01	k: 3576	n:20000
Cons ci ratio: 1.723379e-02	ci left: 7.149286e-01	ci right 7.274070e-01	k: 14424	n:20000
KS ci ratio: 7.972081e-02	ci left: 1.035342e-01	ci right 1.121802e-01	k: 2156	n:20000
TRMT5   20000 perm   4 sec   (5298 perm/sec)   p_kst 1.078000e-01   p_cons 7.212000e-01   p_joint 1.788000e-01

Outputting figure to mutsig2_images.part000000000182/TRMT5.4_1550_20000_0.1078_0.7212_0.1788.png
                gene_name: TRMT5
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 60 percent done.
TROAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.295281e-02	ci left: 2.705218e-01	ci right 2.882069e-01	k: 2793	n:10000
Cons ci ratio: 5.492152e-02	ci left: 3.281313e-01	ci right 3.467635e-01	k: 3374	n:10000
KS ci ratio: 5.885386e-02	ci left: 2.981652e-01	ci right 3.163472e-01	k: 3072	n:10000
TROAP   10000 perm   2 sec   (5507 perm/sec)   p_kst 3.072000e-01   p_cons 3.374000e-01   p_joint 2.793000e-01

Outputting figure to mutsig2_images.part000000000182/TROAP.4_2495_10000_0.3072_0.3374_0.2793.png
                gene_name: TROAP
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 61 percent done.
TRPC4AP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.564363e-02	ci left: 4.146860e-01	ci right 4.341580e-01	k: 4244	n:10000
Cons ci ratio: 9.183970e-02	ci left: 1.469770e-01	ci right 1.612251e-01	k: 1540	n:10000
KS ci ratio: 3.125513e-02	ci left: 6.016648e-01	ci right 6.208704e-01	k: 6113	n:10000
TRPC4AP   10000 perm   2 sec   (5505 perm/sec)   p_kst 6.113000e-01   p_cons 1.540000e-01   p_joint 4.244000e-01

Outputting figure to mutsig2_images.part000000000182/TRPC4AP.4_2470_10000_0.6113_0.154_0.4244.png
                gene_name: TRPC4AP
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 63 percent done.
TRPV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.336488e-02	ci left: 4.398160e-01	ci right 4.594134e-01	k: 4496	n:10000
Cons ci ratio: 5.985006e-02	ci left: 2.911267e-01	ci right 3.091898e-01	k: 3001	n:10000
KS ci ratio: 4.779148e-02	ci left: 3.924695e-01	ci right 4.117875e-01	k: 4021	n:10000
TRPV1   10000 perm   2 sec   (5884 perm/sec)   p_kst 4.021000e-01   p_cons 3.001000e-01   p_joint 4.496000e-01

Outputting figure to mutsig2_images.part000000000182/TRPV1.4_2579_10000_0.4021_0.3001_0.4496.png
                gene_name: TRPV1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 64 percent done.
TRPV4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.783299e-02	ci left: 3.056030e-01	ci right 3.239050e-01	k: 3147	n:10000
Cons ci ratio: 6.089172e-02	ci left: 2.839917e-01	ci right 3.019291e-01	k: 2929	n:10000
KS ci ratio: 6.161973e-02	ci left: 2.791374e-01	ci right 2.969862e-01	k: 2880	n:10000
TRPV4   10000 perm   2 sec   (6003 perm/sec)   p_kst 2.880000e-01   p_cons 2.929000e-01   p_joint 3.147000e-01

Outputting figure to mutsig2_images.part000000000182/TRPV4.4_2676_10000_0.288_0.2929_0.3147.png
                gene_name: TRPV4
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 66 percent done.
TSC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.469450e-02	ci left: 4.249543e-01	ci right 4.444837e-01	k: 4347	n:10000
Cons ci ratio: 9.090017e-02	ci left: 1.496259e-01	ci right 1.639746e-01	k: 1567	n:10000
KS ci ratio: 3.047144e-02	ci left: 6.137180e-01	ci right 6.328101e-01	k: 6233	n:10000
TSC1   10000 perm   2 sec   (5244 perm/sec)   p_kst 6.233000e-01   p_cons 1.567000e-01   p_joint 4.347000e-01

Outputting figure to mutsig2_images.part000000000182/TSC1.4_3579_10000_0.6233_0.1567_0.4347.png
                gene_name: TSC1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 67 percent done.
TRIM43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.941142e-02	ci left: 2.941996e-01	ci right 3.123152e-01	k: 3032	n:10000
Cons ci ratio: 4.679252e-02	ci left: 4.026288e-01	ci right 4.220223e-01	k: 4123	n:10000
KS ci ratio: 7.646715e-02	ci left: 2.000809e-01	ci right 2.160895e-01	k: 2080	n:10000
TRIM43   10000 perm   1 sec   (6965 perm/sec)   p_kst 2.080000e-01   p_cons 4.123000e-01   p_joint 3.032000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM43.3_1365_10000_0.208_0.4123_0.3032.png
                gene_name: TRIM43
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 69 percent done.
TRIM54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.045720e-01	ci left: 1.167209e-01	ci right 1.296994e-01	k: 1231	n:10000
Cons ci ratio: 2.601440e-01	ci left: 1.930852e-02	ci right 2.517438e-02	k: 221	n:10000
KS ci ratio: 1.499047e-01	ci left: 5.918397e-02	ci right 6.887191e-02	k: 639	n:10000
TRIM54   10000 perm   2 sec   (6121 perm/sec)   p_kst 6.390000e-02   p_cons 2.210000e-02   p_joint 1.231000e-01

Joint ci ratio: 1.081378e-01	ci left: 5.830682e-02	ci right 6.502132e-02	k: 1232	n:20000
Cons ci ratio: 1.786746e-01	ci left: 2.139724e-02	ci right 2.564284e-02	k: 469	n:20000
KS ci ratio: 1.059125e-01	ci left: 6.069528e-02	ci right 6.753211e-02	k: 1281	n:20000
TRIM54   20000 perm   4 sec   (5559 perm/sec)   p_kst 6.405000e-02   p_cons 2.345000e-02   p_joint 6.160000e-02

Joint ci ratio: 1.329373e-01	ci left: 2.629135e-02	ci right 3.006743e-02	k: 844	n:30000
Cons ci ratio: 1.490585e-01	ci left: 2.085152e-02	ci right 2.424182e-02	k: 675	n:30000
KS ci ratio: 8.550795e-02	ci left: 6.266056e-02	ci right 6.829061e-02	k: 1963	n:30000
TRIM54   30000 perm   6 sec   (5329 perm/sec)   p_kst 6.543333e-02   p_cons 2.250000e-02   p_joint 2.813333e-02

Joint ci ratio: 1.123204e-01	ci left: 2.788788e-02	ci right 3.123088e-02	k: 1181	n:40000
Cons ci ratio: 1.313685e-01	ci left: 2.034284e-02	ci right 2.322717e-02	k: 870	n:40000
KS ci ratio: 7.380633e-02	ci left: 6.343853e-02	ci right 6.832472e-02	k: 2634	n:40000
TRIM54   40000 perm   8 sec   (5188 perm/sec)   p_kst 6.585000e-02   p_cons 2.175000e-02   p_joint 2.952500e-02

Joint ci ratio: 1.125160e-01	ci left: 2.236495e-02	ci right 2.505074e-02	k: 1184	n:50000
Cons ci ratio: 1.138517e-01	ci left: 2.183991e-02	ci right 2.449585e-02	k: 1157	n:50000
KS ci ratio: 6.670828e-02	ci left: 6.244098e-02	ci right 6.676974e-02	k: 3229	n:50000
TRIM54   50000 perm   10 sec   (5065 perm/sec)   p_kst 6.458000e-02   p_cons 2.314000e-02   p_joint 2.368000e-02

Joint ci ratio: 1.293177e-01	ci left: 1.410711e-02	ci right 1.607353e-02	k: 904	n:60000
Cons ci ratio: 1.043789e-01	ci left: 2.176660e-02	ci right 2.417984e-02	k: 1377	n:60000
KS ci ratio: 6.062901e-02	ci left: 6.315517e-02	ci right 6.712035e-02	k: 3907	n:60000
TRIM54   60000 perm   12 sec   (4955 perm/sec)   p_kst 6.511667e-02   p_cons 2.295000e-02   p_joint 1.506667e-02

Joint ci ratio: 1.275453e-01	ci left: 1.246445e-02	ci right 1.417625e-02	k: 931	n:70000
Cons ci ratio: 9.622855e-02	ci left: 2.204167e-02	ci right 2.428381e-02	k: 1620	n:70000
KS ci ratio: 5.638559e-02	ci left: 6.276172e-02	ci right 6.641733e-02	k: 4520	n:70000
TRIM54   70000 perm   15 sec   (4805 perm/sec)   p_kst 6.457143e-02   p_cons 2.314286e-02   p_joint 1.330000e-02

Joint ci ratio: 1.200608e-01	ci left: 1.235992e-02	ci right 1.395067e-02	k: 1051	n:80000
Cons ci ratio: 9.002786e-02	ci left: 2.210679e-02	ci right 2.420299e-02	k: 1851	n:80000
KS ci ratio: 5.291855e-02	ci left: 6.248640e-02	ci right 6.589529e-02	k: 5134	n:80000
TRIM54   80000 perm   17 sec   (4718 perm/sec)   p_kst 6.417500e-02   p_cons 2.313750e-02   p_joint 1.313750e-02

Joint ci ratio: 1.126890e-01	ci left: 1.251853e-02	ci right 1.402419e-02	k: 1193	n:90000
Cons ci ratio: 8.443423e-02	ci left: 2.240044e-02	ci right 2.438600e-02	k: 2104	n:90000
KS ci ratio: 4.997942e-02	ci left: 6.237655e-02	ci right 6.558496e-02	k: 5757	n:90000
TRIM54   90000 perm   20 sec   (4615 perm/sec)   p_kst 6.396667e-02   p_cons 2.337778e-02   p_joint 1.325556e-02

Joint ci ratio: 1.057674e-01	ci left: 1.283283e-02	ci right 1.427559e-02	k: 1354	n:100000
Cons ci ratio: 8.043459e-02	ci left: 2.226602e-02	ci right 2.414178e-02	k: 2319	n:100000
KS ci ratio: 4.730723e-02	ci left: 6.272804e-02	ci right 6.577729e-02	k: 6424	n:100000
TRIM54   100000 perm   22 sec   (4494 perm/sec)   p_kst 6.424000e-02   p_cons 2.319000e-02   p_joint 1.354000e-02

Joint ci ratio: 1.007939e-01	ci left: 1.287952e-02	ci right 1.425540e-02	k: 1491	n:110000
Cons ci ratio: 7.650745e-02	ci left: 2.241656e-02	ci right 2.420869e-02	k: 2563	n:110000
KS ci ratio: 4.509376e-02	ci left: 6.283045e-02	ci right 6.573803e-02	k: 7070	n:110000
TRIM54   110000 perm   25 sec   (4427 perm/sec)   p_kst 6.427273e-02   p_cons 2.330000e-02   p_joint 1.355455e-02

Joint ci ratio: 9.694569e-02	ci left: 1.278960e-02	ci right 1.410074e-02	k: 1612	n:120000
Cons ci ratio: 7.322476e-02	ci left: 2.247021e-02	ci right 2.418626e-02	k: 2798	n:120000
KS ci ratio: 4.322438e-02	ci left: 6.275357e-02	ci right 6.553420e-02	k: 7696	n:120000
TRIM54   120000 perm   28 sec   (4359 perm/sec)   p_kst 6.413333e-02   p_cons 2.331667e-02   p_joint 1.343333e-02

Outputting figure to mutsig2_images.part000000000182/TRIM54.3_1239_120000_0.064133_0.023317_0.013433.png
                gene_name: TRIM54
               theta_stop: 0.097 
                    nperm: 120000 
                     p_ks: 0.064 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.066 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.013 
    ci_joint_bounds_right: 0.014 

Current progress: 70 percent done.
TRIM58
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.445118e-02	ci left: 8.738790e-01	ci right 8.866985e-01	k: 8804	n:10000
Cons ci ratio: 3.743866e-02	ci left: 5.130550e-01	ci right 5.327317e-01	k: 5229	n:10000
KS ci ratio: 4.188850e-02	ci left: 4.569827e-01	ci right 4.766367e-01	k: 4668	n:10000
TRIM58   10000 perm   1 sec   (6766 perm/sec)   p_kst 4.668000e-01   p_cons 5.229000e-01   p_joint 8.804000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM58.3_1485_10000_0.4668_0.5229_0.8804.png
                gene_name: TRIM58
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 72 percent done.
TRIM63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.662392e-02	ci left: 6.750875e-01	ci right 6.934051e-01	k: 6843	n:10000
KS ci ratio: 3.558940e-02	ci left: 5.382828e-01	ci right 5.578892e-01	k: 5481	n:10000
TRIM63   10000 perm   2 sec   (6320 perm/sec)   p_kst 5.481000e-01   p_cons 6.843000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRIM63.3_1098_10000_0.5481_0.6843_1.png
                gene_name: TRIM63
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
TRIM67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.518144e-01	ci left: 5.773721e-02	ci right 6.731959e-02	k: 624	n:10000
Cons ci ratio: 4.869771e-02	ci left: 3.835091e-01	ci right 4.027532e-01	k: 3931	n:10000
KS ci ratio: 1.643869e-01	ci left: 4.936226e-02	ci right 5.829990e-02	k: 537	n:10000
TRIM67   10000 perm   2 sec   (6029 perm/sec)   p_kst 5.370000e-02   p_cons 3.931000e-01   p_joint 6.240000e-02

Joint ci ratio: 1.201260e-01	ci left: 4.750575e-02	ci right 5.362575e-02	k: 1010	n:20000
Cons ci ratio: 3.531981e-02	ci left: 3.743619e-01	ci right 3.878726e-01	k: 7622	n:20000
KS ci ratio: 1.160139e-01	ci left: 5.085900e-02	ci right 5.717145e-02	k: 1079	n:20000
TRIM67   20000 perm   4 sec   (5388 perm/sec)   p_kst 5.395000e-02   p_cons 3.811000e-01   p_joint 5.050000e-02

Joint ci ratio: 9.682870e-02	ci left: 4.928641e-02	ci right 5.433417e-02	k: 1553	n:30000
Cons ci ratio: 2.887210e-02	ci left: 3.750676e-01	ci right 3.860888e-01	k: 11417	n:30000
KS ci ratio: 9.408279e-02	ci left: 5.212081e-02	ci right 5.729919e-02	k: 1640	n:30000
TRIM67   30000 perm   6 sec   (5144 perm/sec)   p_kst 5.466667e-02   p_cons 3.805667e-01   p_joint 5.176667e-02

Outputting figure to mutsig2_images.part000000000182/TRIM67.3_2392_30000_0.054667_0.38057_0.051767.png
                gene_name: TRIM67
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.057 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.054 

Current progress: 75 percent done.
TRIM68
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.958796e-02	ci left: 4.851533e-01	ci right 5.048496e-01	k: 4950	n:10000
KS ci ratio: 2.451724e-02	ci left: 7.098755e-01	ci right 7.275970e-01	k: 7188	n:10000
TRIM68   10000 perm   2 sec   (6460 perm/sec)   p_kst 7.188000e-01   p_cons 4.950000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRIM68.3_1482_10000_0.7188_0.495_1.png
                gene_name: TRIM68
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
TRIM71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.650599e-02	ci left: 3.156236e-01	ci right 3.340785e-01	k: 3248	n:10000
Cons ci ratio: 1.274646e-01	ci left: 8.086735e-02	ci right 9.197496e-02	k: 863	n:10000
KS ci ratio: 2.198004e-02	ci left: 7.523136e-01	ci right 7.691342e-01	k: 7608	n:10000
TRIM71   10000 perm   2 sec   (5951 perm/sec)   p_kst 7.608000e-01   p_cons 8.630000e-02   p_joint 3.248000e-01

Joint ci ratio: 3.808752e-02	ci left: 3.396042e-01	ci right 3.528405e-01	k: 6924	n:20000
Cons ci ratio: 8.984865e-02	ci left: 8.298234e-02	ci right 9.083824e-02	k: 1737	n:20000
KS ci ratio: 1.548251e-02	ci left: 7.562368e-01	ci right 7.680868e-01	k: 15244	n:20000
TRIM71   20000 perm   4 sec   (5262 perm/sec)   p_kst 7.622000e-01   p_cons 8.685000e-02   p_joint 3.462000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM71.3_2623_20000_0.7622_0.08685_0.3462.png
                gene_name: TRIM71
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 78 percent done.
TRMT12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.989902e-02	ci left: 1.861912e-01	ci right 2.017874e-01	k: 1939	n:10000
Cons ci ratio: 1.573961e-01	ci left: 5.378678e-02	ci right 6.307254e-02	k: 583	n:10000
KS ci ratio: 2.564880e-02	ci left: 6.911127e-01	ci right 7.091706e-01	k: 7002	n:10000
TRMT12   10000 perm   2 sec   (6518 perm/sec)   p_kst 7.002000e-01   p_cons 5.830000e-02   p_joint 1.939000e-01

Joint ci ratio: 3.548885e-02	ci left: 3.721200e-01	ci right 3.856152e-01	k: 7577	n:20000
Cons ci ratio: 1.080911e-01	ci left: 5.835555e-02	ci right 6.507257e-02	k: 1233	n:20000
KS ci ratio: 1.824715e-02	ci left: 6.912315e-01	ci right 7.040110e-01	k: 13953	n:20000
TRMT12   20000 perm   3 sec   (5776 perm/sec)   p_kst 6.976500e-01   p_cons 6.165000e-02   p_joint 3.788500e-01

Joint ci ratio: 3.774323e-02	ci left: 2.594490e-01	ci right 2.694633e-01	k: 7933	n:30000
Cons ci ratio: 8.874306e-02	ci left: 5.835035e-02	ci right 6.380170e-02	k: 1831	n:30000
KS ci ratio: 1.492536e-02	ci left: 6.916637e-01	ci right 7.020981e-01	k: 20907	n:30000
TRMT12   30000 perm   5 sec   (5492 perm/sec)   p_kst 6.969000e-01   p_cons 6.103333e-02   p_joint 2.644333e-01

Outputting figure to mutsig2_images.part000000000182/TRMT12.3_1351_30000_0.6969_0.061033_0.26443.png
                gene_name: TRMT12
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 79 percent done.
TRMU
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.554127e-02	ci left: 3.231670e-01	ci right 3.417307e-01	k: 3324	n:10000
Cons ci ratio: 5.697756e-03	ci left: 9.764223e-01	ci right 9.820937e-01	k: 9794	n:10000
KS ci ratio: 8.432283e-02	ci left: 1.701542e-01	ci right 1.852341e-01	k: 1776	n:10000
TRMU   10000 perm   2 sec   (6254 perm/sec)   p_kst 1.776000e-01   p_cons 9.794000e-01   p_joint 3.324000e-01

Outputting figure to mutsig2_images.part000000000182/TRMU.3_1310_10000_0.1776_0.9794_0.3324.png
                gene_name: TRMU
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 81 percent done.
TRPV3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.385736e-02	ci left: 7.208794e-01	ci right 7.383866e-01	k: 7297	n:10000
Cons ci ratio: 5.655452e-03	ci left: 9.767421e-01	ci right 9.823736e-01	k: 9797	n:10000
KS ci ratio: 4.127109e-02	ci left: 4.643719e-01	ci right 4.840431e-01	k: 4742	n:10000
TRPV3   10000 perm   2 sec   (5688 perm/sec)   p_kst 4.742000e-01   p_cons 9.797000e-01   p_joint 7.297000e-01

Outputting figure to mutsig2_images.part000000000182/TRPV3.3_2441_10000_0.4742_0.9797_0.7297.png
                gene_name: TRPV3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 82 percent done.
TRIM49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.166236e-02	ci left: 2.219788e-01	ci right 2.385786e-01	k: 2302	n:10000
Cons ci ratio: 7.660662e-02	ci left: 1.994895e-01	ci right 2.154812e-01	k: 2074	n:10000
KS ci ratio: 2.307825e-02	ci left: 7.339111e-01	ci right 7.511474e-01	k: 7426	n:10000
TRIM49   10000 perm   2 sec   (6346 perm/sec)   p_kst 7.426000e-01   p_cons 2.074000e-01   p_joint 2.302000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM49.2_1383_10000_0.7426_0.2074_0.2302.png
                gene_name: TRIM49
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 84 percent done.
TRIM52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.132906e-02	ci left: 4.636729e-01	ci right 4.833426e-01	k: 4735	n:10000
Cons ci ratio: 4.406368e-02	ci left: 4.319352e-01	ci right 4.514988e-01	k: 4417	n:10000
KS ci ratio: 4.045260e-02	ci left: 4.743609e-01	ci right 4.940483e-01	k: 4842	n:10000
TRIM52   10000 perm   2 sec   (6467 perm/sec)   p_kst 4.842000e-01   p_cons 4.417000e-01   p_joint 4.735000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM52.2_902_10000_0.4842_0.4417_0.4735.png
                gene_name: TRIM52
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 85 percent done.
TRIM56
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.618968e-02	ci left: 5.299709e-01	ci right 5.496059e-01	k: 5398	n:10000
KS ci ratio: 6.043923e-02	ci left: 2.870634e-01	ci right 3.050555e-01	k: 2960	n:10000
TRIM56   10000 perm   2 sec   (6239 perm/sec)   p_kst 2.960000e-01   p_cons 5.398000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRIM56.2_2272_10000_0.296_0.5398_1.png
                gene_name: TRIM56
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
TRIM59
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.354587e-02	ci left: 5.674464e-01	ci right 5.869086e-01	k: 5772	n:10000
Cons ci ratio: 5.369191e-02	ci left: 3.382620e-01	ci right 3.570268e-01	k: 3476	n:10000
KS ci ratio: 2.666705e-02	ci left: 6.743823e-01	ci right 6.927107e-01	k: 6836	n:10000
TRIM59   10000 perm   1 sec   (7117 perm/sec)   p_kst 6.836000e-01   p_cons 3.476000e-01   p_joint 5.772000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM59.2_1216_10000_0.6836_0.3476_0.5772.png
                gene_name: TRIM59
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 88 percent done.
TRIM7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.190577e-02	ci left: 2.207943e-01	ci right 2.373638e-01	k: 2290	n:10000
Cons ci ratio: 8.951618e-02	ci left: 1.536497e-01	ci right 1.681484e-01	k: 1608	n:10000
KS ci ratio: 1.054524e-01	ci left: 1.149621e-01	ci right 1.278593e-01	k: 1213	n:10000
TRIM7   10000 perm   2 sec   (6540 perm/sec)   p_kst 1.213000e-01   p_cons 1.608000e-01   p_joint 2.290000e-01

Joint ci ratio: 5.155386e-02	ci left: 2.184354e-01	ci right 2.300448e-01	k: 4484	n:20000
Cons ci ratio: 6.584042e-02	ci left: 1.455706e-01	ci right 1.555312e-01	k: 3010	n:20000
KS ci ratio: 7.350328e-02	ci left: 1.199050e-01	ci right 1.291044e-01	k: 2489	n:20000
TRIM7   20000 perm   3 sec   (5805 perm/sec)   p_kst 1.244500e-01   p_cons 1.505000e-01   p_joint 2.242000e-01

Outputting figure to mutsig2_images.part000000000182/TRIM7.2_1684_20000_0.12445_0.1505_0.2242.png
                gene_name: TRIM7
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 90 percent done.
TRMT2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.453877e-02	ci left: 5.531109e-01	ci right 5.726525e-01	k: 5629	n:10000
Cons ci ratio: 4.189710e-03	ci left: 9.865389e-01	ci right 9.907693e-01	k: 9888	n:10000
KS ci ratio: 5.052124e-02	ci left: 3.661952e-01	ci right 3.852773e-01	k: 3757	n:10000
TRMT2B   10000 perm   1 sec   (6830 perm/sec)   p_kst 3.757000e-01   p_cons 9.888000e-01   p_joint 5.629000e-01

Outputting figure to mutsig2_images.part000000000182/TRMT2B.2_1563_10000_0.3757_0.9888_0.5629.png
                gene_name: TRMT2B
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 91 percent done.
TRNAU1AP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.697756e-03	ci left: 9.764223e-01	ci right 9.820937e-01	k: 9794	n:10000
Cons ci ratio: 1.910346e-02	ci left: 8.002425e-01	ci right 8.157777e-01	k: 8081	n:10000
KS ci ratio: 3.300599e-02	ci left: 5.753695e-01	ci right 5.947809e-01	k: 5851	n:10000
TRNAU1AP   10000 perm   1 sec   (7295 perm/sec)   p_kst 5.851000e-01   p_cons 8.081000e-01   p_joint 9.794000e-01

Outputting figure to mutsig2_images.part000000000182/TRNAU1AP.2_900_10000_0.5851_0.8081_0.9794.png
                gene_name: TRNAU1AP
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 93 percent done.
TRNT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.188540e-01	ci left: 9.224042e-02	ci right 1.039949e-01	k: 980	n:10000
KS ci ratio: 1.280774e-02	ci left: 8.976473e-01	ci right 9.093165e-01	k: 9036	n:10000
TRNT1   10000 perm   1 sec   (6753 perm/sec)   p_kst 9.036000e-01   p_cons 9.800000e-02   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 8.383109e-02	ci left: 9.440373e-02	ci right 1.027134e-01	k: 1970	n:20000
KS ci ratio: 8.869412e-03	ci left: 9.030434e-01	ci right 9.111378e-01	k: 18143	n:20000
TRNT1   20000 perm   3 sec   (5975 perm/sec)   p_kst 9.071500e-01   p_cons 9.850000e-02   p_joint 1

Outputting figure to mutsig2_images.part000000000182/TRNT1.2_1333_20000_0.90715_0.0985_1.png
                gene_name: TRNT1
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.099 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
TRPM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.470375e-02	ci left: 8.700961e-01	ci right 8.830836e-01	k: 8767	n:10000
Cons ci ratio: 2.708085e-02	ci left: 6.676335e-01	ci right 6.860634e-01	k: 6769	n:10000
KS ci ratio: 2.217319e-02	ci left: 7.490766e-01	ci right 7.659732e-01	k: 7576	n:10000
TRPM4   10000 perm   2 sec   (5616 perm/sec)   p_kst 7.576000e-01   p_cons 6.769000e-01   p_joint 8.767000e-01

Outputting figure to mutsig2_images.part000000000182/TRPM4.2_3745_10000_0.7576_0.6769_0.8767.png
                gene_name: TRPM4
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 96 percent done.
TRUB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.055786e-02	ci left: 7.761063e-01	ci right 7.923278e-01	k: 7843	n:10000
Cons ci ratio: 2.336195e-02	ci left: 7.291621e-01	ci right 7.464992e-01	k: 7379	n:10000
KS ci ratio: 1.945368e-02	ci left: 7.944581e-01	ci right 8.101654e-01	k: 8024	n:10000
TRUB2   10000 perm   1 sec   (7044 perm/sec)   p_kst 8.024000e-01   p_cons 7.379000e-01   p_joint 7.843000e-01

Outputting figure to mutsig2_images.part000000000182/TRUB2.2_1028_10000_0.8024_0.7379_0.7843.png
                gene_name: TRUB2
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 97 percent done.
TRYX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.932758e-02	ci left: 4.884519e-01	ci right 5.081491e-01	k: 4983	n:10000
Cons ci ratio: 1.230716e-01	ci left: 8.640461e-02	ci right 9.783428e-02	k: 920	n:10000
KS ci ratio: 2.286705e-02	ci left: 7.374485e-01	ci right 7.546079e-01	k: 7461	n:10000
TRYX3   10000 perm   1 sec   (7074 perm/sec)   p_kst 7.461000e-01   p_cons 9.200000e-02   p_joint 4.983000e-01

Joint ci ratio: 4.943354e-02	ci left: 2.332515e-01	ci right 2.451244e-01	k: 4783	n:20000
Cons ci ratio: 8.800347e-02	ci left: 8.626460e-02	ci right 9.425499e-02	k: 1804	n:20000
KS ci ratio: 1.621442e-02	ci left: 7.389494e-01	ci right 7.510793e-01	k: 14901	n:20000
TRYX3   20000 perm   3 sec   (6211 perm/sec)   p_kst 7.450500e-01   p_cons 9.020000e-02   p_joint 2.391500e-01

Outputting figure to mutsig2_images.part000000000182/TRYX3.2_746_20000_0.74505_0.0902_0.23915.png
                gene_name: TRYX3
               theta_stop: 0.088 
                    nperm: 20000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.086 
     ci_cons_bounds_right: 0.094 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 99 percent done.
TSC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.167123e-02	ci left: 3.557534e-01	ci right 3.747251e-01	k: 3652	n:10000
Cons ci ratio: 3.746117e-02	ci left: 5.127548e-01	ci right 5.324320e-01	k: 5226	n:10000
KS ci ratio: 8.015541e-02	ci left: 1.852067e-01	ci right 2.007725e-01	k: 1929	n:10000
TSC2   10000 perm   2 sec   (5148 perm/sec)   p_kst 1.929000e-01   p_cons 5.226000e-01   p_joint 3.652000e-01

Outputting figure to mutsig2_images.part000000000182/TSC2.2_5588_10000_0.1929_0.5226_0.3652.png
                gene_name: TSC2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000182
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 182 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1709>
Subject: Job 9894193: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1709>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000183> was used as the working directory.
Started at Sat Oct  6 00:33:24 2012
Results reported at Sat Oct  6 01:00:29 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000183.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000183.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 183  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000183.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1671.91 sec.
    Max Memory :      3594 MB
    Max Swap   :      5920 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
183
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 183
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 183: processing genes 16408 - 16497
Calculating significance of each gene.
Using projection method.
16408	TSC22D1	9.839962e-01
16409	TSC22D2	9.206924e-01
16410	TSC22D3	7.380237e-01
16411	TSC22D4	7.685876e-01
16412	TSEN15	9.870179e-02
16413	TSEN2	3.445547e-01
16414	TSEN34	7.287647e-01
16415	TSEN54	7.717532e-01
16416	TSFM	2.390599e-02
16417	TSG101	2.365050e-02
16418	TSGA10	7.193648e-02
16419	TSGA10IP	7.421471e-01
16420	TSGA13	5.206675e-01
16421	TSGA14	1.447248e-01
16422	TSHB	3.576989e-01
16423	TSHR	8.839533e-02
16424	TSHZ1	8.229481e-01
16425	TSHZ2	4.266462e-02
16426	TSHZ3	2.365705e-02
16427	TSKS	3.493071e-02
16428	TSKU	7.500732e-01
16429	TSLP	1.341847e-01
16430	TSN	1
16431	TSNARE1	9.099455e-01
16432	TSNAX	2.933995e-01
16433	TSNAXIP1	7.034055e-01
16434	TSPAN1	1
16435	TSPAN10	6.345741e-01
16436	TSPAN11	3.359784e-01
16437	TSPAN12	1
16438	TSPAN13	6.097314e-01
16439	TSPAN14	4.878891e-01
16440	TSPAN15	4.958447e-01
16441	TSPAN16	4.429364e-01
16442	TSPAN17	6.688696e-01
16443	TSPAN18	8.748148e-02
16444	TSPAN19	1.983104e-01
16445	TSPAN2	2.912838e-01
16446	TSPAN3	1.963496e-01
16447	TSPAN31	1
16448	TSPAN32	1
16449	TSPAN33	1.299375e-01
16450	TSPAN4	1
16451	TSPAN5	2.126399e-02
16452	TSPAN6	2.785707e-01
16453	TSPAN7	5.181200e-01
16454	TSPAN8	1.196852e-01
16455	TSPAN9	2.248776e-01
16456	TSPO	1
16457	TSPO2	3.119366e-01
16458	TSPY1	1
16459	TSPY2	1
16460	TSPYL1	7.575159e-01
16461	TSPYL2	8.635075e-01
16462	TSPYL4	2.995357e-01
16463	TSPYL5	5.767266e-02
16464	TSPYL6	3.843449e-01
16465	TSR1	6.586650e-01
16466	TSR2	4.790599e-01
16467	TSSC1	5.590135e-01
16468	TSSC4	7.307352e-01
16469	TSSK1B	4.714844e-02
16470	TSSK2	6.586973e-01
16471	TSSK3	9.219969e-02
16472	TSSK4	2.077150e-01
16473	TSSK6	8.001512e-01
16474	TST	7.836635e-01
16475	TSTA3	6.739920e-01
16476	TSTD2	2.172766e-01
In gene TTBK1 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 3183    n = 1	mu =   8.55e-07
16477	TTBK1	4.794072e-01
16478	TTBK2	8.269649e-01
16479	TTC1	1.914657e-01
16480	TTC12	8.844569e-01
16481	TTC13	2.878868e-01
16482	TTC14	4.208144e-02
16483	TTC15	3.807530e-01
16484	TTC16	1
16485	TTC17	4.139140e-01
16486	TTC18	5.266002e-01
16487	TTC19	1
16488	TTC21A	6.055920e-01
16489	TTC21B	3.507499e-01
16490	TTC22	5.944397e-01
16491	TTC23	3.559181e-01
16492	TTC23L	1.063888e-01
16493	TTC24	2.302008e-01
16494	TTC25	9.678913e-01
16495	TTC26	7.701589e-01
16496	TTC27	1.158239e-01
16497	TTC29	1.195190e-01
Done

Running MutSig 2:
Scatter job 183: processing genes 16408 - 16497
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TSHZ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.062509e-01	ci left: 1.133992e-01	ci right 1.262232e-01	k: 1197	n:10000
Cons ci ratio: 9.913811e-02	ci left: 1.284572e-01	ci right 1.419561e-01	k: 1351	n:10000
KS ci ratio: 8.469983e-02	ci left: 1.688761e-01	ci right 1.839129e-01	k: 1763	n:10000
TSHZ3   10000 perm   2 sec   (4730 perm/sec)   p_kst 1.763000e-01   p_cons 1.351000e-01   p_joint 1.197000e-01

Joint ci ratio: 7.912587e-02	ci left: 1.049587e-01	ci right 1.136553e-01	k: 2185	n:20000
Cons ci ratio: 7.041895e-02	ci left: 1.294058e-01	ci right 1.389008e-01	k: 2682	n:20000
KS ci ratio: 6.075172e-02	ci left: 1.670398e-01	ci right 1.775557e-01	k: 3445	n:20000
TSHZ3   20000 perm   6 sec   (3128 perm/sec)   p_kst 1.722500e-01   p_cons 1.341000e-01   p_joint 1.092500e-01

Outputting figure to mutsig2_images.part000000000183/TSHZ3.15_3254_20000_0.17225_0.1341_0.10925.png
                gene_name: TSHZ3
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 2 percent done.
TSHZ2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.124280e-02	ci left: 7.646610e-01	ci right 7.811797e-01	k: 7730	n:10000
KS ci ratio: 9.234243e-03	ci left: 9.429466e-01	ci right 9.517905e-01	k: 9475	n:10000
TSHZ2   10000 perm   2 sec   (5133 perm/sec)   p_kst 9.475000e-01   p_cons 7.730000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TSHZ2.9_3113_10000_0.9475_0.773_1.png
                gene_name: TSHZ2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
TTBK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.705415e-02	ci left: 3.999392e-01	ci right 4.193135e-01	k: 4096	n:10000
Cons ci ratio: 2.911732e-02	ci left: 6.349268e-01	ci right 6.537891e-01	k: 6444	n:10000
KS ci ratio: 7.178385e-02	ci left: 2.213865e-01	ci right 2.379712e-01	k: 2296	n:10000
TTBK1   10000 perm   2 sec   (4733 perm/sec)   p_kst 2.296000e-01   p_cons 6.444000e-01   p_joint 4.096000e-01

Outputting figure to mutsig2_images.part000000000183/TTBK1.8_4022_10000_0.2296_0.6444_0.4096.png
                gene_name: TTBK1
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 5 percent done.
TTC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.913147e-02	ci left: 2.961823e-01	ci right 3.143313e-01	k: 3052	n:10000
Cons ci ratio: 6.126117e-02	ci left: 2.815149e-01	ci right 2.994073e-01	k: 2904	n:10000
KS ci ratio: 5.183877e-02	ci left: 3.542622e-01	ci right 3.732173e-01	k: 3637	n:10000
TTC14   10000 perm   2 sec   (5347 perm/sec)   p_kst 3.637000e-01   p_cons 2.904000e-01   p_joint 3.052000e-01

Outputting figure to mutsig2_images.part000000000183/TTC14.8_2391_10000_0.3637_0.2904_0.3052.png
                gene_name: TTC14
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 7 percent done.
TTC21A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.349652e-02	ci left: 4.383194e-01	ci right 4.579108e-01	k: 4481	n:10000
Cons ci ratio: 1.998574e-02	ci left: 7.856340e-01	ci right 8.015946e-01	k: 7937	n:10000
KS ci ratio: 6.390416e-02	ci left: 2.645824e-01	ci right 2.821498e-01	k: 2733	n:10000
TTC21A   10000 perm   2 sec   (4263 perm/sec)   p_kst 2.733000e-01   p_cons 7.937000e-01   p_joint 4.481000e-01

Outputting figure to mutsig2_images.part000000000183/TTC21A.8_4082_10000_0.2733_0.7937_0.4481.png
                gene_name: TTC21A
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 9 percent done.
TTC21B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.765834e-02	ci left: 6.582693e-01	ci right 6.768330e-01	k: 6676	n:10000
Cons ci ratio: 7.112090e-02	ci left: 2.246444e-01	ci right 2.413115e-01	k: 2329	n:10000
KS ci ratio: 8.654491e-03	ci left: 9.492931e-01	ci right 9.576401e-01	k: 9536	n:10000
TTC21B   10000 perm   2 sec   (4630 perm/sec)   p_kst 9.536000e-01   p_cons 2.329000e-01   p_joint 6.676000e-01

Outputting figure to mutsig2_images.part000000000183/TTC21B.8_4067_10000_0.9536_0.2329_0.6676.png
                gene_name: TTC21B
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 10 percent done.
TTC27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.974606e-02	ci left: 1.867820e-01	ci right 2.023963e-01	k: 1945	n:10000
Cons ci ratio: 7.010154e-02	ci left: 2.297793e-01	ci right 2.465735e-01	k: 2381	n:10000
KS ci ratio: 1.489128e-01	ci left: 5.995589e-02	ci right 6.969950e-02	k: 647	n:10000
TTC27   10000 perm   2 sec   (5069 perm/sec)   p_kst 6.470000e-02   p_cons 2.381000e-01   p_joint 1.945000e-01

Joint ci ratio: 8.228827e-02	ci left: 9.769141e-02	ci right 1.061247e-01	k: 2037	n:20000
Cons ci ratio: 5.093931e-02	ci left: 2.225968e-01	ci right 2.342823e-01	k: 4568	n:20000
KS ci ratio: 1.036003e-01	ci left: 6.332911e-02	ci right 7.029747e-02	k: 1335	n:20000
TTC27   20000 perm   4 sec   (4586 perm/sec)   p_kst 6.675000e-02   p_cons 2.284000e-01   p_joint 1.018500e-01

Joint ci ratio: 7.125634e-02	ci left: 8.835881e-02	ci right 9.492052e-02	k: 2748	n:30000
Cons ci ratio: 4.148406e-02	ci left: 2.245858e-01	ci right 2.341333e-01	k: 6880	n:30000
KS ci ratio: 8.465779e-02	ci left: 6.386939e-02	ci right 6.954820e-02	k: 2000	n:30000
TTC27   30000 perm   7 sec   (4404 perm/sec)   p_kst 6.666667e-02   p_cons 2.293333e-01   p_joint 9.160000e-02

Outputting figure to mutsig2_images.part000000000183/TTC27.8_2612_30000_0.066667_0.22933_0.0916.png
                gene_name: TTC27
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.067 
        ci_ks_bounds_left: 0.064 
       ci_ks_bounds_right: 0.070 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.095 

Current progress: 12 percent done.
TSHR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.347955e-02	ci left: 3.400502e-01	ci right 3.588375e-01	k: 3494	n:10000
Cons ci ratio: 9.838216e-02	ci left: 1.302192e-01	ci right 1.437930e-01	k: 1369	n:10000
KS ci ratio: 9.499402e-02	ci left: 1.385451e-01	ci right 1.524621e-01	k: 1454	n:10000
TSHR   10000 perm   2 sec   (5393 perm/sec)   p_kst 1.454000e-01   p_cons 1.369000e-01   p_joint 3.494000e-01

Outputting figure to mutsig2_images.part000000000183/TSHR.7_2472_10000_0.1454_0.1369_0.3494.png
                gene_name: TSHR
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 14 percent done.
TSHZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.667657e-02	ci left: 1.991939e-01	ci right 2.151771e-01	k: 2071	n:10000
Cons ci ratio: 8.446737e-02	ci left: 1.696626e-01	ci right 1.847259e-01	k: 1771	n:10000
KS ci ratio: 5.784639e-02	ci left: 3.055038e-01	ci right 3.238042e-01	k: 3146	n:10000
TSHZ1   10000 perm   2 sec   (4955 perm/sec)   p_kst 3.146000e-01   p_cons 1.771000e-01   p_joint 2.071000e-01

Outputting figure to mutsig2_images.part000000000183/TSHZ1.7_3103_10000_0.3146_0.1771_0.2071.png
                gene_name: TSHZ1
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 16 percent done.
TSSK1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.522995e-02	ci left: 3.256490e-01	ci right 3.442472e-01	k: 3349	n:10000
Cons ci ratio: 9.457605e-02	ci left: 1.396231e-01	ci right 1.535834e-01	k: 1465	n:10000
KS ci ratio: 4.679252e-02	ci left: 4.026288e-01	ci right 4.220223e-01	k: 4123	n:10000
TSSK1B   10000 perm   2 sec   (5913 perm/sec)   p_kst 4.123000e-01   p_cons 1.465000e-01   p_joint 3.349000e-01

Outputting figure to mutsig2_images.part000000000183/TSSK1B.7_1108_10000_0.4123_0.1465_0.3349.png
                gene_name: TSSK1B
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 17 percent done.
TSGA10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.208325e-02	ci left: 5.891158e-01	ci right 6.084267e-01	k: 5988	n:10000
Cons ci ratio: 3.997784e-02	ci left: 4.802562e-01	ci right 4.999496e-01	k: 4901	n:10000
KS ci ratio: 4.495000e-02	ci left: 4.221625e-01	ci right 4.416772e-01	k: 4319	n:10000
TSGA10   10000 perm   2 sec   (5244 perm/sec)   p_kst 4.319000e-01   p_cons 4.901000e-01   p_joint 5.988000e-01

Outputting figure to mutsig2_images.part000000000183/TSGA10.6_2161_10000_0.4319_0.4901_0.5988.png
                gene_name: TSGA10
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 19 percent done.
TSKS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.183862e-01	ci left: 9.292171e-02	ci right 1.047132e-01	k: 987	n:10000
Cons ci ratio: 1.393752e-01	ci left: 6.816984e-02	ci right 7.848038e-02	k: 732	n:10000
KS ci ratio: 5.751282e-02	ci left: 3.079837e-01	ci right 3.263229e-01	k: 3171	n:10000
TSKS   10000 perm   2 sec   (5575 perm/sec)   p_kst 3.171000e-01   p_cons 7.320000e-02   p_joint 9.870000e-02

Joint ci ratio: 6.837259e-02	ci left: 1.363027e-01	ci right 1.460018e-01	k: 2822	n:20000
Cons ci ratio: 9.503318e-02	ci left: 7.466227e-02	ci right 8.216085e-02	k: 1567	n:20000
KS ci ratio: 4.188643e-02	ci left: 2.981259e-01	ci right 3.109309e-01	k: 6090	n:20000
TSKS   20000 perm   4 sec   (5041 perm/sec)   p_kst 3.045000e-01   p_cons 7.835000e-02   p_joint 1.411000e-01

Outputting figure to mutsig2_images.part000000000183/TSKS.6_1823_20000_0.3045_0.07835_0.1411.png
                gene_name: TSKS
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 21 percent done.
TSR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.261969e-02	ci left: 7.415933e-01	ci right 7.586608e-01	k: 7502	n:10000
Cons ci ratio: 1.034147e-02	ci left: 9.299902e-01	ci right 9.397546e-01	k: 9350	n:10000
KS ci ratio: 2.807057e-02	ci left: 6.516263e-01	ci right 6.702799e-01	k: 6610	n:10000
TSR1   10000 perm   2 sec   (5425 perm/sec)   p_kst 6.610000e-01   p_cons 9.350000e-01   p_joint 7.502000e-01

Outputting figure to mutsig2_images.part000000000183/TSR1.6_2475_10000_0.661_0.935_0.7502.png
                gene_name: TSR1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 22 percent done.
TTBK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.884302e-02	ci left: 4.946505e-01	ci right 5.143469e-01	k: 5045	n:10000
Cons ci ratio: 4.860600e-02	ci left: 3.844050e-01	ci right 4.036568e-01	k: 3940	n:10000
KS ci ratio: 4.262781e-02	ci left: 4.482980e-01	ci right 4.679264e-01	k: 4581	n:10000
TTBK2   10000 perm   2 sec   (5179 perm/sec)   p_kst 4.581000e-01   p_cons 3.940000e-01   p_joint 5.045000e-01

Outputting figure to mutsig2_images.part000000000183/TTBK2.6_3791_10000_0.4581_0.394_0.5045.png
                gene_name: TTBK2
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 24 percent done.
TTC13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.829303e-01	ci left: 3.987233e-02	ci right 4.799604e-02	k: 438	n:10000
Cons ci ratio: 2.366646e-01	ci left: 2.353468e-02	ci right 2.994503e-02	k: 266	n:10000
KS ci ratio: 1.189212e-01	ci left: 9.214310e-02	ci right 1.038923e-01	k: 979	n:10000
TTC13   10000 perm   2 sec   (5180 perm/sec)   p_kst 9.790000e-02   p_cons 2.660000e-02   p_joint 4.380000e-02

Joint ci ratio: 1.493429e-01	ci left: 3.080828e-02	ci right 3.582860e-02	k: 665	n:20000
Cons ci ratio: 1.566712e-01	ci left: 2.796788e-02	ci right 3.276994e-02	k: 606	n:20000
KS ci ratio: 8.413924e-02	ci left: 9.376599e-02	ci right 1.020513e-01	k: 1957	n:20000
TTC13   20000 perm   4 sec   (4702 perm/sec)   p_kst 9.785000e-02   p_cons 3.030000e-02   p_joint 3.325000e-02

Joint ci ratio: 1.055762e-01	ci left: 4.160929e-02	ci right 4.627955e-02	k: 1317	n:30000
Cons ci ratio: 1.259045e-01	ci left: 2.932611e-02	ci right 3.329867e-02	k: 938	n:30000
KS ci ratio: 6.940939e-02	ci left: 9.275464e-02	ci right 9.945715e-02	k: 2882	n:30000
TTC13   30000 perm   7 sec   (4501 perm/sec)   p_kst 9.606667e-02   p_cons 3.126667e-02   p_joint 4.390000e-02

Joint ci ratio: 9.092802e-02	ci left: 4.237759e-02	ci right 4.643888e-02	k: 1775	n:40000
Cons ci ratio: 1.090369e-01	ci left: 2.959084e-02	ci right 3.302765e-02	k: 1251	n:40000
KS ci ratio: 5.991240e-02	ci left: 9.377120e-02	ci right 9.958751e-02	k: 3866	n:40000
TTC13   40000 perm   9 sec   (4375 perm/sec)   p_kst 9.665000e-02   p_cons 3.127500e-02   p_joint 4.437500e-02

Joint ci ratio: 8.796457e-02	ci left: 3.651717e-02	ci right 3.989671e-02	k: 1909	n:50000
Cons ci ratio: 1.019842e-01	ci left: 2.723445e-02	ci right 3.018061e-02	k: 1434	n:50000
KS ci ratio: 5.357358e-02	ci left: 9.412291e-02	ci right 9.932402e-02	k: 4835	n:50000
TTC13   50000 perm   12 sec   (4278 perm/sec)   p_kst 9.670000e-02   p_cons 2.868000e-02   p_joint 3.818000e-02

Joint ci ratio: 8.969639e-02	ci left: 2.946454e-02	ci right 3.224775e-02	k: 1850	n:60000
Cons ci ratio: 9.374505e-02	ci left: 2.698764e-02	ci right 2.965825e-02	k: 1698	n:60000
KS ci ratio: 4.875807e-02	ci left: 9.487387e-02	ci right 9.963184e-02	k: 5834	n:60000
TTC13   60000 perm   14 sec   (4185 perm/sec)   p_kst 9.723333e-02   p_cons 2.830000e-02   p_joint 3.083333e-02

Outputting figure to mutsig2_images.part000000000183/TTC13.6_2675_60000_0.097233_0.0283_0.030833.png
                gene_name: TTC13
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.100 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.031 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.032 

Current progress: 26 percent done.
TTC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.113991e-02	ci left: 7.663823e-01	ci right 7.828574e-01	k: 7747	n:10000
Cons ci ratio: 4.533675e-02	ci left: 4.179754e-01	ci right 4.374667e-01	k: 4277	n:10000
KS ci ratio: 1.902955e-02	ci left: 8.014606e-01	ci right 8.169589e-01	k: 8093	n:10000
TTC15   10000 perm   2 sec   (5239 perm/sec)   p_kst 8.093000e-01   p_cons 4.277000e-01   p_joint 7.747000e-01

Outputting figure to mutsig2_images.part000000000183/TTC15.6_2252_10000_0.8093_0.4277_0.7747.png
                gene_name: TTC15
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 28 percent done.
TTC18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.058591e-02	ci left: 3.655984e-01	ci right 3.846744e-01	k: 3751	n:10000
Cons ci ratio: 2.129120e-02	ci left: 7.638510e-01	ci right 7.803902e-01	k: 7722	n:10000
KS ci ratio: 7.856994e-02	ci left: 1.914104e-01	ci right 2.071652e-01	k: 1992	n:10000
TTC18   10000 perm   2 sec   (4439 perm/sec)   p_kst 1.992000e-01   p_cons 7.722000e-01   p_joint 3.751000e-01

Outputting figure to mutsig2_images.part000000000183/TTC18.6_3474_10000_0.1992_0.7722_0.3751.png
                gene_name: TTC18
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.38 

Current progress: 29 percent done.
TTC29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.707822e-02	ci left: 8.331748e-01	ci right 8.476263e-01	k: 8405	n:10000
Cons ci ratio: 3.172396e-02	ci left: 5.945361e-01	ci right 6.138031e-01	k: 6042	n:10000
KS ci ratio: 3.273486e-02	ci left: 5.793822e-01	ci right 5.987658e-01	k: 5891	n:10000
TTC29   10000 perm   2 sec   (6265 perm/sec)   p_kst 5.891000e-01   p_cons 6.042000e-01   p_joint 8.405000e-01

Outputting figure to mutsig2_images.part000000000183/TTC29.6_1472_10000_0.5891_0.6042_0.8405.png
                gene_name: TTC29
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 31 percent done.
TSFM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.106743e-02	ci left: 1.817616e-01	ci right 1.972197e-01	k: 1894	n:10000
Cons ci ratio: 6.757094e-02	ci left: 2.432172e-01	ci right 2.603276e-01	k: 2517	n:10000
KS ci ratio: 7.906570e-02	ci left: 1.894406e-01	ci right 2.051361e-01	k: 1972	n:10000
TSFM   10000 perm   2 sec   (6312 perm/sec)   p_kst 1.972000e-01   p_cons 2.517000e-01   p_joint 1.894000e-01

Outputting figure to mutsig2_images.part000000000183/TSFM.5_1150_10000_0.1972_0.2517_0.1894.png
                gene_name: TSFM
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 33 percent done.
TSPAN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.068591e-02	ci left: 6.104028e-01	ci right 6.295273e-01	k: 6200	n:10000
Cons ci ratio: 5.439399e-03	ci left: 9.783435e-01	ci right 9.837711e-01	k: 9812	n:10000
KS ci ratio: 4.489509e-02	ci left: 4.227607e-01	ci right 4.422786e-01	k: 4325	n:10000
TSPAN5   10000 perm   2 sec   (6105 perm/sec)   p_kst 4.325000e-01   p_cons 9.812000e-01   p_joint 6.200000e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN5.5_839_10000_0.4325_0.9812_0.62.png
                gene_name: TSPAN5
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 34 percent done.
TTC17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.218526e-02	ci left: 7.488743e-01	ci right 7.657756e-01	k: 7574	n:10000
Cons ci ratio: 1.757859e-02	ci left: 8.251362e-01	ci right 8.398695e-01	k: 8326	n:10000
KS ci ratio: 3.156504e-02	ci left: 5.969456e-01	ci right 6.161923e-01	k: 6066	n:10000
TTC17   10000 perm   2 sec   (4882 perm/sec)   p_kst 6.066000e-01   p_cons 8.326000e-01   p_joint 7.574000e-01

Outputting figure to mutsig2_images.part000000000183/TTC17.5_3522_10000_0.6066_0.8326_0.7574.png
                gene_name: TTC17
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 36 percent done.
TSG101
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.056825e-02	ci left: 2.274091e-01	ci right 2.441451e-01	k: 2357	n:10000
Cons ci ratio: 6.053044e-03	ci left: 9.736569e-01	ci right 9.796610e-01	k: 9768	n:10000
KS ci ratio: 1.497797e-01	ci left: 5.928045e-02	ci right 6.897537e-02	k: 640	n:10000
TSG101   10000 perm   2 sec   (6052 perm/sec)   p_kst 6.400000e-02   p_cons 9.768000e-01   p_joint 2.357000e-01

Joint ci ratio: 7.252515e-02	ci left: 1.228085e-01	ci right 1.321001e-01	k: 2548	n:20000
Cons ci ratio: 4.350709e-03	ci left: 9.737834e-01	ci right 9.780767e-01	k: 19520	n:20000
KS ci ratio: 1.082314e-01	ci left: 5.820936e-02	ci right 6.491880e-02	k: 1230	n:20000
TSG101   20000 perm   4 sec   (5434 perm/sec)   p_kst 6.150000e-02   p_cons 9.760000e-01   p_joint 1.274000e-01

Joint ci ratio: 6.257833e-02	ci left: 1.120354e-01	ci right 1.193059e-01	k: 3469	n:30000
Cons ci ratio: 3.528451e-03	ci left: 9.745152e-01	ci right 9.779917e-01	k: 29289	n:30000
KS ci ratio: 8.874306e-02	ci left: 5.835035e-02	ci right 6.380170e-02	k: 1831	n:30000
TSG101   30000 perm   6 sec   (5192 perm/sec)   p_kst 6.103333e-02   p_cons 9.763000e-01   p_joint 1.156333e-01

Outputting figure to mutsig2_images.part000000000183/TSG101.4_1213_30000_0.061033_0.9763_0.11563.png
                gene_name: TSG101
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.064 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 38 percent done.
TSGA14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.041386e-01	ci left: 1.176005e-01	ci right 1.306194e-01	k: 1240	n:10000
Cons ci ratio: 1.415757e-01	ci left: 6.613851e-02	ci right 7.631298e-02	k: 711	n:10000
KS ci ratio: 8.031013e-02	ci left: 1.846161e-01	ci right 2.001635e-01	k: 1923	n:10000
TSGA14   10000 perm   2 sec   (6383 perm/sec)   p_kst 1.923000e-01   p_cons 7.110000e-02   p_joint 1.240000e-01

Joint ci ratio: 7.151575e-02	ci left: 1.259097e-01	ci right 1.352980e-01	k: 2611	n:20000
Cons ci ratio: 9.539674e-02	ci left: 7.412433e-02	ci right 8.159894e-02	k: 1556	n:20000
KS ci ratio: 5.784248e-02	ci left: 1.813204e-01	ci right 1.921709e-01	k: 3734	n:20000
TSGA14   20000 perm   4 sec   (5700 perm/sec)   p_kst 1.867000e-01   p_cons 7.780000e-02   p_joint 1.305500e-01

Outputting figure to mutsig2_images.part000000000183/TSGA14.4_1166_20000_0.1867_0.0778_0.13055.png
                gene_name: TSGA14
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.078 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.082 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 40 percent done.
TSNAXIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.907736e-02	ci left: 3.798263e-01	ci right 3.990382e-01	k: 3894	n:10000
Cons ci ratio: 1.021741e-01	ci left: 1.217066e-01	ci right 1.349108e-01	k: 1282	n:10000
KS ci ratio: 1.810553e-02	ci left: 8.165953e-01	ci right 8.316154e-01	k: 8242	n:10000
TSNAXIP1   10000 perm   2 sec   (5541 perm/sec)   p_kst 8.242000e-01   p_cons 1.282000e-01   p_joint 3.894000e-01

Joint ci ratio: 2.510625e-02	ci left: 5.423725e-01	ci right 5.562132e-01	k: 10986	n:20000
Cons ci ratio: 6.793886e-02	ci left: 1.378305e-01	ci right 1.475737e-01	k: 2853	n:20000
KS ci ratio: 1.200112e-02	ci left: 8.370223e-01	ci right 8.471780e-01	k: 16843	n:20000
TSNAXIP1   20000 perm   4 sec   (5039 perm/sec)   p_kst 8.421500e-01   p_cons 1.426500e-01   p_joint 5.493000e-01

Outputting figure to mutsig2_images.part000000000183/TSNAXIP1.4_2033_20000_0.84215_0.14265_0.5493.png
                gene_name: TSNAXIP1
               theta_stop: 0.068 
                    nperm: 20000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 41 percent done.
TSPAN18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.429577e-03	ci left: 9.906076e-01	ci right 9.940963e-01	k: 9925	n:10000
Cons ci ratio: 4.286896e-02	ci left: 4.455036e-01	ci right 4.651224e-01	k: 4553	n:10000
KS ci ratio: 2.706847e-02	ci left: 6.678349e-01	ci right 6.862618e-01	k: 6771	n:10000
TSPAN18   10000 perm   2 sec   (6235 perm/sec)   p_kst 6.771000e-01   p_cons 4.553000e-01   p_joint 9.925000e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN18.4_775_10000_0.6771_0.4553_0.9925.png
                gene_name: TSPAN18
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 43 percent done.
TSPYL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.728722e-01	ci left: 4.465920e-02	ci right 5.320602e-02	k: 488	n:10000
Cons ci ratio: 3.209154e-01	ci left: 1.234131e-02	ci right 1.714746e-02	k: 146	n:10000
KS ci ratio: 4.512443e-02	ci left: 4.202683e-01	ci right 4.397725e-01	k: 4300	n:10000
TSPYL4   10000 perm   2 sec   (6018 perm/sec)   p_kst 4.300000e-01   p_cons 1.460000e-02   p_joint 4.880000e-02

Joint ci ratio: 1.049967e-01	ci left: 6.171935e-02	ci right 6.860773e-02	k: 1302	n:20000
Cons ci ratio: 2.269270e-01	ci left: 1.303072e-02	ci right 1.641252e-02	k: 293	n:20000
KS ci ratio: 3.214936e-02	ci left: 4.194822e-01	ci right 4.332392e-01	k: 8527	n:20000
TSPYL4   20000 perm   4 sec   (5415 perm/sec)   p_kst 4.263500e-01   p_cons 1.465000e-02   p_joint 6.510000e-02

Joint ci ratio: 4.769216e-02	ci left: 1.793982e-01	ci right 1.881964e-01	k: 5513	n:30000
Cons ci ratio: 1.815619e-01	ci left: 1.390964e-02	ci right 1.671870e-02	k: 458	n:30000
KS ci ratio: 2.623364e-02	ci left: 4.210606e-01	ci right 4.322870e-01	k: 12800	n:30000
TSPYL4   30000 perm   6 sec   (5159 perm/sec)   p_kst 4.266667e-01   p_cons 1.526667e-02   p_joint 1.837667e-01

Joint ci ratio: 4.020761e-02	ci left: 1.881253e-01	ci right 1.958695e-01	k: 7679	n:40000
Cons ci ratio: 1.414044e-01	ci left: 1.751566e-02	ci right 2.020484e-02	k: 753	n:40000
KS ci ratio: 2.286115e-02	ci left: 4.187758e-01	ci right 4.284853e-01	k: 16945	n:40000
TSPYL4   40000 perm   8 sec   (4980 perm/sec)   p_kst 4.236250e-01   p_cons 1.882500e-02   p_joint 1.919750e-01

Joint ci ratio: 4.395815e-02	ci left: 1.341954e-01	ci right 1.402468e-01	k: 6860	n:50000
Cons ci ratio: 1.276195e-01	ci left: 1.733690e-02	ci right 1.971947e-02	k: 925	n:50000
KS ci ratio: 2.039620e-02	ci left: 4.205216e-01	ci right 4.292071e-01	k: 21243	n:50000
TSPYL4   50000 perm   10 sec   (4846 perm/sec)   p_kst 4.248600e-01   p_cons 1.850000e-02   p_joint 1.372000e-01

Joint ci ratio: 3.910516e-02	ci left: 1.406376e-01	ci right 1.462636e-01	k: 8606	n:60000
Cons ci ratio: 1.312452e-01	ci left: 1.368771e-02	ci right 1.562632e-02	k: 878	n:60000
KS ci ratio: 1.862404e-02	ci left: 4.207735e-01	ci right 4.287004e-01	k: 25484	n:60000
TSPYL4   60000 perm   13 sec   (4728 perm/sec)   p_kst 4.247333e-01   p_cons 1.463333e-02   p_joint 1.434333e-01

Joint ci ratio: 4.894450e-02	ci left: 8.188462e-02	ci right 8.600709e-02	k: 5875	n:70000
Cons ci ratio: 1.208239e-01	ci left: 1.391849e-02	ci right 1.572206e-02	k: 1036	n:70000
KS ci ratio: 1.724628e-02	ci left: 4.209630e-01	ci right 4.283004e-01	k: 29724	n:70000
TSPYL4   70000 perm   15 sec   (4622 perm/sec)   p_kst 4.246286e-01   p_cons 1.480000e-02   p_joint 8.392857e-02

Joint ci ratio: 5.643026e-02	ci left: 5.527994e-02	ci right 5.850229e-02	k: 4550	n:80000
Cons ci ratio: 1.139087e-01	ci left: 1.375593e-02	ci right 1.542955e-02	k: 1166	n:80000
KS ci ratio: 1.619921e-02	ci left: 4.191861e-01	ci right 4.260445e-01	k: 33809	n:80000
TSPYL4   80000 perm   18 sec   (4527 perm/sec)   p_kst 4.226125e-01   p_cons 1.457500e-02   p_joint 5.687500e-02

Joint ci ratio: 4.496596e-02	ci left: 7.611309e-02	ci right 7.962529e-02	k: 7007	n:90000
Cons ci ratio: 9.672517e-02	ci left: 1.705463e-02	ci right 1.879886e-02	k: 1612	n:90000
KS ci ratio: 1.530418e-02	ci left: 4.183819e-01	ci right 4.248454e-01	k: 37945	n:90000
TSPYL4   90000 perm   20 sec   (4440 perm/sec)   p_kst 4.216111e-01   p_cons 1.791111e-02   p_joint 7.785556e-02

Outputting figure to mutsig2_images.part000000000183/TSPYL4.4_1249_90000_0.42161_0.017911_0.077856.png
                gene_name: TSPYL4
               theta_stop: 0.097 
                    nperm: 90000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.018 
      ci_cons_bounds_left: 0.017 
     ci_cons_bounds_right: 0.019 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.080 

Current progress: 45 percent done.
TSPYL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.417103e-02	ci left: 4.307383e-01	ci right 4.502963e-01	k: 4405	n:10000
Cons ci ratio: 7.281323e-02	ci left: 2.164518e-01	ci right 2.329089e-01	k: 2246	n:10000
KS ci ratio: 3.947729e-02	ci left: 4.865527e-01	ci right 5.062494e-01	k: 4964	n:10000
TSPYL5   10000 perm   2 sec   (5708 perm/sec)   p_kst 4.964000e-01   p_cons 2.246000e-01   p_joint 4.405000e-01

Outputting figure to mutsig2_images.part000000000183/TSPYL5.4_1258_10000_0.4964_0.2246_0.4405.png
                gene_name: TSPYL5
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 47 percent done.
TSSK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.004063e-02	ci left: 7.847215e-01	ci right 8.007076e-01	k: 7928	n:10000
Cons ci ratio: 7.318717e-03	ci left: 9.626796e-01	ci right 9.698454e-01	k: 9664	n:10000
KS ci ratio: 3.799760e-02	ci left: 5.056516e-01	ci right 5.253394e-01	k: 5155	n:10000
TSSK3   10000 perm   2 sec   (6644 perm/sec)   p_kst 5.155000e-01   p_cons 9.664000e-01   p_joint 7.928000e-01

Outputting figure to mutsig2_images.part000000000183/TSSK3.4_815_10000_0.5155_0.9664_0.7928.png
                gene_name: TSSK3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 48 percent done.
TTC23L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.118844e-02	ci left: 4.653707e-01	ci right 4.850438e-01	k: 4752	n:10000
Cons ci ratio: 3.812710e-02	ci left: 5.039511e-01	ci right 5.236409e-01	k: 5138	n:10000
KS ci ratio: 4.035556e-02	ci left: 4.755598e-01	ci right 4.952487e-01	k: 4854	n:10000
TTC23L   10000 perm   2 sec   (5902 perm/sec)   p_kst 4.854000e-01   p_cons 5.138000e-01   p_joint 4.752000e-01

Outputting figure to mutsig2_images.part000000000183/TTC23L.4_1122_10000_0.4854_0.5138_0.4752.png
                gene_name: TTC23L
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 50 percent done.
TSC22D1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.373865e-02	ci left: 5.646388e-01	ci right 5.841179e-01	k: 5744	n:10000
KS ci ratio: 2.065500e-02	ci left: 7.744852e-01	ci right 7.907498e-01	k: 7827	n:10000
TSC22D1   10000 perm   2 sec   (5507 perm/sec)   p_kst 7.827000e-01   p_cons 5.744000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TSC22D1.3_3363_10000_0.7827_0.5744_1.png
                gene_name: TSC22D1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 52 percent done.
TSC22D2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.103695e-01	ci left: 1.326304e-02	ci right 1.822489e-02	k: 156	n:10000
Cons ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
KS ci ratio: 4.922911e-01	ci left: 4.756711e-03	ci right 7.941167e-03	k: 62	n:10000
TSC22D2   10000 perm   2 sec   (6366 perm/sec)   p_kst 6.200000e-03   p_cons 8.600000e-03   p_joint 1.560000e-02

Joint ci ratio: 4.077371e-01	ci left: 3.664911e-03	ci right 5.583495e-03	k: 91	n:20000
Cons ci ratio: 2.908546e-01	ci left: 7.691529e-03	ci right 1.035416e-02	k: 179	n:20000
KS ci ratio: 3.266248e-01	ci left: 5.983476e-03	ci right 8.363189e-03	k: 142	n:20000
TSC22D2   20000 perm   4 sec   (5626 perm/sec)   p_kst 7.100000e-03   p_cons 8.950000e-03   p_joint 4.550000e-03

Joint ci ratio: 4.520690e-01	ci left: 1.937345e-03	ci right 3.095698e-03	k: 74	n:30000
Cons ci ratio: 2.315018e-01	ci left: 8.370517e-03	ci right 1.059270e-02	k: 283	n:30000
KS ci ratio: 2.676344e-01	ci left: 6.150100e-03	ci right 8.080539e-03	k: 212	n:30000
TSC22D2   30000 perm   6 sec   (5303 perm/sec)   p_kst 7.066667e-03   p_cons 9.433333e-03   p_joint 2.466667e-03

Joint ci ratio: 4.127340e-01	ci left: 1.787227e-03	ci right 2.737351e-03	k: 89	n:40000
Cons ci ratio: 2.031211e-01	ci left: 8.287633e-03	ci right 1.018464e-02	k: 368	n:40000
KS ci ratio: 2.338615e-01	ci left: 6.159321e-03	ci right 7.813469e-03	k: 278	n:40000
TSC22D2   40000 perm   8 sec   (5107 perm/sec)   p_kst 6.950000e-03   p_cons 9.200000e-03   p_joint 2.225000e-03

Joint ci ratio: 4.083080e-01	ci left: 1.465596e-03	ci right 2.234093e-03	k: 91	n:50000
Cons ci ratio: 1.769468e-01	ci left: 8.859481e-03	ci right 1.059815e-02	k: 485	n:50000
KS ci ratio: 2.103143e-01	ci left: 6.174213e-03	ci right 7.643912e-03	k: 344	n:50000
TSC22D2   50000 perm   10 sec   (4958 perm/sec)   p_kst 6.880000e-03   p_cons 9.700000e-03   p_joint 1.820000e-03

Joint ci ratio: 4.435603e-01	ci left: 1.012915e-03	ci right 1.603689e-03	k: 77	n:60000
Cons ci ratio: 1.593641e-01	ci left: 9.187279e-03	ci right 1.079398e-02	k: 598	n:60000
KS ci ratio: 1.926944e-01	ci left: 6.189770e-03	ci right 7.525267e-03	k: 410	n:60000
TSC22D2   60000 perm   12 sec   (4835 perm/sec)   p_kst 6.833333e-03   p_cons 9.966667e-03   p_joint 1.283333e-03

Joint ci ratio: 4.436021e-01	ci left: 8.681973e-04	ci right 1.374622e-03	k: 77	n:70000
Cons ci ratio: 1.457451e-01	ci left: 9.482641e-03	ci right 1.098694e-02	k: 715	n:70000
KS ci ratio: 1.807886e-01	ci left: 6.068111e-03	ci right 7.287608e-03	k: 466	n:70000
TSC22D2   70000 perm   15 sec   (4725 perm/sec)   p_kst 6.657143e-03   p_cons 1.021429e-02   p_joint 1.100000e-03

Joint ci ratio: 4.200369e-01	ci left: 8.599484e-04	ci right 1.327449e-03	k: 86	n:80000
Cons ci ratio: 1.351922e-01	ci left: 9.696477e-03	ci right 1.111437e-02	k: 831	n:80000
KS ci ratio: 1.705195e-01	ci left: 6.002724e-03	ci right 7.133507e-03	k: 524	n:80000
TSC22D2   80000 perm   17 sec   (4622 perm/sec)   p_kst 6.550000e-03   p_cons 1.038750e-02   p_joint 1.075000e-03

Joint ci ratio: 3.241565e-01	ci left: 1.359717e-03	ci right 1.895450e-03	k: 145	n:90000
Cons ci ratio: 1.271179e-01	ci left: 9.790518e-03	ci right 1.113021e-02	k: 940	n:90000
KS ci ratio: 1.626669e-01	ci left: 5.889423e-03	ci right 6.942771e-03	k: 576	n:90000
TSC22D2   90000 perm   20 sec   (4531 perm/sec)   p_kst 6.400000e-03   p_cons 1.044444e-02   p_joint 1.611111e-03

Joint ci ratio: 1.488240e-01	ci left: 6.377022e-03	ci right 7.411890e-03	k: 688	n:100000
Cons ci ratio: 1.209785e-01	ci left: 9.761057e-03	ci right 1.102758e-02	k: 1038	n:100000
KS ci ratio: 1.544542e-01	ci left: 5.905497e-03	ci right 6.903457e-03	k: 639	n:100000
TSC22D2   100000 perm   22 sec   (4446 perm/sec)   p_kst 6.390000e-03   p_cons 1.038000e-02   p_joint 6.880000e-03

Joint ci ratio: 1.692220e-01	ci left: 4.443650e-03	ci right 5.273696e-03	k: 533	n:110000
Cons ci ratio: 1.153434e-01	ci left: 9.791215e-03	ci right 1.099844e-02	k: 1142	n:110000
KS ci ratio: 1.471612e-01	ci left: 5.937260e-03	ci right 6.889045e-03	k: 704	n:110000
TSC22D2   110000 perm   25 sec   (4365 perm/sec)   p_kst 6.400000e-03   p_cons 1.038182e-02   p_joint 4.845455e-03

Joint ci ratio: 1.695757e-01	ci left: 4.057316e-03	ci right 4.816939e-03	k: 531	n:120000
Cons ci ratio: 1.102949e-01	ci left: 9.841805e-03	ci right 1.099871e-02	k: 1249	n:120000
KS ci ratio: 1.399010e-01	ci left: 6.045077e-03	ci right 6.962351e-03	k: 779	n:120000
TSC22D2   120000 perm   28 sec   (4287 perm/sec)   p_kst 6.491667e-03   p_cons 1.040833e-02   p_joint 4.425000e-03

Joint ci ratio: 1.678710e-01	ci left: 3.826218e-03	ci right 4.534641e-03	k: 542	n:130000
Cons ci ratio: 1.061728e-01	ci left: 9.825664e-03	ci right 1.093480e-02	k: 1348	n:130000
KS ci ratio: 1.353019e-01	ci left: 5.981143e-03	ci right 6.856477e-03	k: 833	n:130000
TSC22D2   130000 perm   31 sec   (4214 perm/sec)   p_kst 6.407692e-03   p_cons 1.036923e-02   p_joint 4.169231e-03

Joint ci ratio: 1.807047e-01	ci left: 3.047258e-03	ci right 3.659311e-03	k: 468	n:140000
Cons ci ratio: 1.015983e-01	ci left: 9.986579e-03	ci right 1.106241e-02	k: 1472	n:140000
KS ci ratio: 1.315014e-01	ci left: 5.892221e-03	ci right 6.728425e-03	k: 882	n:140000
TSC22D2   140000 perm   34 sec   (4144 perm/sec)   p_kst 6.300000e-03   p_cons 1.051429e-02   p_joint 3.342857e-03

Joint ci ratio: 1.818959e-01	ci left: 2.805891e-03	ci right 3.373586e-03	k: 462	n:150000
Cons ci ratio: 9.844414e-02	ci left: 9.944787e-03	ci right 1.098093e-02	k: 1568	n:150000
KS ci ratio: 1.277971e-01	ci left: 5.834818e-03	ci right 6.637781e-03	k: 934	n:150000
TSC22D2   150000 perm   37 sec   (4077 perm/sec)   p_kst 6.226667e-03   p_cons 1.045333e-02   p_joint 3.080000e-03

Joint ci ratio: 1.788405e-01	ci left: 2.725997e-03	ci right 3.267261e-03	k: 478	n:160000
Cons ci ratio: 9.530664e-02	ci left: 9.963593e-03	ci right 1.096676e-02	k: 1673	n:160000
KS ci ratio: 1.236975e-01	ci left: 5.851511e-03	ci right 6.629045e-03	k: 997	n:160000
TSC22D2   160000 perm   40 sec   (4009 perm/sec)   p_kst 6.231250e-03   p_cons 1.045625e-02   p_joint 2.987500e-03

Joint ci ratio: 1.807584e-01	ci left: 2.509443e-03	ci right 3.013635e-03	k: 468	n:170000
Cons ci ratio: 9.271488e-02	ci left: 9.923175e-03	ci right 1.089363e-02	k: 1768	n:170000
KS ci ratio: 1.201968e-01	ci left: 5.843775e-03	ci right 6.596743e-03	k: 1056	n:170000
TSC22D2   170000 perm   43 sec   (3947 perm/sec)   p_kst 6.211765e-03   p_cons 1.040000e-02   p_joint 2.752941e-03

Joint ci ratio: 1.807723e-01	ci left: 2.370013e-03	ci right 2.846231e-03	k: 468	n:180000
Cons ci ratio: 9.010411e-02	ci left: 9.936460e-03	ci right 1.087941e-02	k: 1872	n:180000
KS ci ratio: 1.169248e-01	ci left: 5.842569e-03	ci right 6.573472e-03	k: 1116	n:180000
TSC22D2   180000 perm   46 sec   (3887 perm/sec)   p_kst 6.200000e-03   p_cons 1.040000e-02   p_joint 2.600000e-03

Joint ci ratio: 1.759608e-01	ci left: 2.376010e-03	ci right 2.839374e-03	k: 494	n:190000
Cons ci ratio: 8.779195e-02	ci left: 9.928094e-03	ci right 1.084483e-02	k: 1972	n:190000
KS ci ratio: 1.137604e-01	ci left: 5.857081e-03	ci right 6.568638e-03	k: 1179	n:190000
TSC22D2   190000 perm   50 sec   (3832 perm/sec)   p_kst 6.205263e-03   p_cons 1.037895e-02   p_joint 2.600000e-03

Joint ci ratio: 1.864603e-01	ci left: 1.999409e-03	ci right 2.415230e-03	k: 440	n:200000
Cons ci ratio: 8.548260e-02	ci left: 9.959997e-03	ci right 1.085428e-02	k: 2080	n:200000
KS ci ratio: 1.104382e-01	ci left: 5.914143e-03	ci right 6.610284e-03	k: 1251	n:200000
TSC22D2   200000 perm   53 sec   (3776 perm/sec)   p_kst 6.255000e-03   p_cons 1.040000e-02   p_joint 2.200000e-03

Joint ci ratio: 1.827694e-01	ci left: 1.985951e-03	ci right 2.389892e-03	k: 458	n:210000
Cons ci ratio: 8.350072e-02	ci left: 9.951838e-03	ci right 1.082366e-02	k: 2180	n:210000
KS ci ratio: 1.078840e-01	ci left: 5.910430e-03	ci right 6.589022e-03	k: 1311	n:210000
TSC22D2   210000 perm   56 sec   (3723 perm/sec)   p_kst 6.242857e-03   p_cons 1.038095e-02   p_joint 2.180952e-03

Joint ci ratio: 1.774350e-01	ci left: 2.017219e-03	ci right 2.414260e-03	k: 486	n:220000
Cons ci ratio: 8.141647e-02	ci left: 1.000254e-02	ci right 1.085589e-02	k: 2293	n:220000
KS ci ratio: 1.052679e-01	ci left: 5.933781e-03	ci right 6.597511e-03	k: 1377	n:220000
TSC22D2   220000 perm   60 sec   (3668 perm/sec)   p_kst 6.259091e-03   p_cons 1.042273e-02   p_joint 2.209091e-03

Joint ci ratio: 1.783635e-01	ci left: 1.908733e-03	ci right 2.286599e-03	k: 481	n:230000
Cons ci ratio: 7.911629e-02	ci left: 1.014285e-02	ci right 1.098260e-02	k: 2428	n:230000
KS ci ratio: 1.027260e-01	ci left: 5.967993e-03	ci right 6.618456e-03	k: 1446	n:230000
TSC22D2   230000 perm   64 sec   (3614 perm/sec)   p_kst 6.286957e-03   p_cons 1.055652e-02   p_joint 2.091304e-03

Joint ci ratio: 1.798733e-01	ci left: 1.797354e-03	ci right 2.156510e-03	k: 473	n:240000
Cons ci ratio: 7.736739e-02	ci left: 1.017369e-02	ci right 1.099653e-02	k: 2539	n:240000
KS ci ratio: 1.001936e-01	ci left: 6.019844e-03	ci right 6.658833e-03	k: 1520	n:240000
TSC22D2   240000 perm   67 sec   (3563 perm/sec)   p_kst 6.333333e-03   p_cons 1.057917e-02   p_joint 1.970833e-03

Joint ci ratio: 2.044717e-01	ci left: 1.317932e-03	ci right 1.621814e-03	k: 366	n:250000
Cons ci ratio: 7.600533e-02	ci left: 1.012767e-02	ci right 1.093174e-02	k: 2631	n:250000
KS ci ratio: 9.821219e-02	ci left: 6.020897e-03	ci right 6.646631e-03	k: 1582	n:250000
TSC22D2   250000 perm   71 sec   (3518 perm/sec)   p_kst 6.328000e-03   p_cons 1.052400e-02   p_joint 1.464000e-03

Joint ci ratio: 2.014760e-01	ci left: 1.307399e-03	ci right 1.603893e-03	k: 377	n:260000
Cons ci ratio: 7.443707e-02	ci left: 1.016082e-02	ci right 1.095015e-02	k: 2743	n:260000
KS ci ratio: 9.610895e-02	ci left: 6.052017e-03	ci right 6.666757e-03	k: 1652	n:260000
TSC22D2   260000 perm   75 sec   (3476 perm/sec)   p_kst 6.353846e-03   p_cons 1.055000e-02   p_joint 1.450000e-03

Joint ci ratio: 2.047624e-01	ci left: 1.216787e-03	ci right 1.497795e-03	k: 365	n:270000
Cons ci ratio: 7.318250e-02	ci left: 1.012984e-02	ci right 1.090294e-02	k: 2838	n:270000
KS ci ratio: 9.421788e-02	ci left: 6.070113e-03	ci right 6.673889e-03	k: 1719	n:270000
TSC22D2   270000 perm   79 sec   (3422 perm/sec)   p_kst 6.366667e-03   p_cons 1.051111e-02   p_joint 1.351852e-03

Joint ci ratio: 2.004274e-01	ci left: 1.227575e-03	ci right 1.504339e-03	k: 381	n:280000
Cons ci ratio: 7.179172e-02	ci left: 1.015731e-02	ci right 1.091716e-02	k: 2949	n:280000
KS ci ratio: 9.248631e-02	ci left: 6.080048e-03	ci right 6.673096e-03	k: 1784	n:280000
TSC22D2   280000 perm   83 sec   (3375 perm/sec)   p_kst 6.371429e-03   p_cons 1.053214e-02   p_joint 1.360714e-03

Joint ci ratio: 1.993896e-01	ci left: 1.198346e-03	ci right 1.466951e-03	k: 385	n:290000
Cons ci ratio: 7.032656e-02	ci left: 1.022706e-02	ci right 1.097587e-02	k: 3073	n:290000
KS ci ratio: 9.089629e-02	ci left: 6.082651e-03	ci right 6.665210e-03	k: 1847	n:290000
TSC22D2   290000 perm   87 sec   (3338 perm/sec)   p_kst 6.368966e-03   p_cons 1.059655e-02   p_joint 1.327586e-03

Joint ci ratio: 2.025716e-01	ci left: 1.120409e-03	ci right 1.376049e-03	k: 373	n:300000
Cons ci ratio: 6.910061e-02	ci left: 1.024644e-02	ci right 1.098306e-02	k: 3183	n:300000
KS ci ratio: 8.931503e-02	ci left: 6.094940e-03	ci right 6.667991e-03	k: 1913	n:300000
TSC22D2   300000 perm   91 sec   (3302 perm/sec)   p_kst 6.376667e-03   p_cons 1.061000e-02   p_joint 1.243333e-03

Joint ci ratio: 2.118520e-01	ci left: 9.863874e-04	ci right 1.223098e-03	k: 341	n:310000
Cons ci ratio: 6.804108e-02	ci left: 1.023295e-02	ci right 1.095689e-02	k: 3283	n:310000
KS ci ratio: 8.761334e-02	ci left: 6.134918e-03	ci right 6.700175e-03	k: 1988	n:310000
TSC22D2   310000 perm   95 sec   (3267 perm/sec)   p_kst 6.412903e-03   p_cons 1.059032e-02   p_joint 1.100000e-03

Joint ci ratio: 2.109316e-01	ci left: 9.644403e-04	ci right 1.194748e-03	k: 344	n:320000
Cons ci ratio: 6.691899e-02	ci left: 1.025420e-02	ci right 1.096721e-02	k: 3394	n:320000
KS ci ratio: 8.649171e-02	ci left: 6.102160e-03	ci right 6.656837e-03	k: 2040	n:320000
TSC22D2   320000 perm   99 sec   (3231 perm/sec)   p_kst 6.375000e-03   p_cons 1.060625e-02   p_joint 1.075000e-03

Joint ci ratio: 2.085286e-01	ci left: 9.581837e-04	ci right 1.184058e-03	k: 352	n:330000
Cons ci ratio: 6.576539e-02	ci left: 1.030108e-02	ci right 1.100453e-02	k: 3514	n:330000
KS ci ratio: 8.510568e-02	ci left: 6.115921e-03	ci right 6.662498e-03	k: 2107	n:330000
TSC22D2   330000 perm   103 sec   (3194 perm/sec)   p_kst 6.384848e-03   p_cons 1.064848e-02   p_joint 1.066667e-03

Joint ci ratio: 2.473365e-01	ci left: 6.469923e-04	ci right 8.322764e-04	k: 250	n:340000
Cons ci ratio: 6.464249e-02	ci left: 1.035398e-02	ci right 1.104852e-02	k: 3637	n:340000
KS ci ratio: 8.376484e-02	ci left: 6.131820e-03	ci right 6.670762e-03	k: 2175	n:340000
TSC22D2   340000 perm   108 sec   (3158 perm/sec)   p_kst 6.397059e-03   p_cons 1.069706e-02   p_joint 7.352941e-04

Joint ci ratio: 2.468475e-01	ci left: 6.311864e-04	ci right 8.115317e-04	k: 251	n:350000
Cons ci ratio: 6.379849e-02	ci left: 1.033084e-02	ci right 1.101444e-02	k: 3734	n:350000
KS ci ratio: 8.261523e-02	ci left: 6.127285e-03	ci right 6.658081e-03	k: 2236	n:350000
TSC22D2   350000 perm   112 sec   (3123 perm/sec)   p_kst 6.388571e-03   p_cons 1.066857e-02   p_joint 7.171429e-04

Joint ci ratio: 2.389170e-01	ci left: 6.580037e-04	ci right 8.390776e-04	k: 268	n:360000
Cons ci ratio: 6.286247e-02	ci left: 1.035006e-02	ci right 1.102452e-02	k: 3846	n:360000
KS ci ratio: 8.117464e-02	ci left: 6.174759e-03	ci right 6.699899e-03	k: 2316	n:360000
TSC22D2   360000 perm   117 sec   (3087 perm/sec)   p_kst 6.433333e-03   p_cons 1.068333e-02   p_joint 7.444444e-04

Joint ci ratio: 2.358679e-01	ci left: 6.580135e-04	ci right 8.364419e-04	k: 275	n:370000
Cons ci ratio: 6.203779e-02	ci left: 1.034436e-02	ci right 1.100929e-02	k: 3949	n:370000
KS ci ratio: 8.007628e-02	ci left: 6.177360e-03	ci right 6.695281e-03	k: 2380	n:370000
TSC22D2   370000 perm   121 sec   (3053 perm/sec)   p_kst 6.432432e-03   p_cons 1.067297e-02   p_joint 7.432432e-04

Joint ci ratio: 2.329327e-01	ci left: 6.580367e-04	ci right 8.339311e-04	k: 282	n:380000
Cons ci ratio: 6.126765e-02	ci left: 1.033124e-02	ci right 1.098678e-02	k: 4049	n:380000
KS ci ratio: 7.908648e-02	ci left: 6.169549e-03	ci right 6.680127e-03	k: 2440	n:380000
TSC22D2   380000 perm   126 sec   (3019 perm/sec)   p_kst 6.421053e-03   p_cons 1.065526e-02   p_joint 7.421053e-04

Joint ci ratio: 2.325242e-01	ci left: 6.435780e-04	ci right 8.152625e-04	k: 283	n:390000
Cons ci ratio: 6.039326e-02	ci left: 1.036430e-02	ci right 1.101223e-02	k: 4167	n:390000
KS ci ratio: 7.796012e-02	ci left: 6.189834e-03	ci right 6.694464e-03	k: 2511	n:390000
TSC22D2   390000 perm   131 sec   (2986 perm/sec)   p_kst 6.438462e-03   p_cons 1.068462e-02   p_joint 7.256410e-04

Joint ci ratio: 2.285347e-01	ci left: 6.510452e-04	ci right 8.213217e-04	k: 293	n:400000
Cons ci ratio: 5.957635e-02	ci left: 1.038838e-02	ci right 1.102873e-02	k: 4282	n:400000
KS ci ratio: 7.700067e-02	ci left: 6.189537e-03	ci right 6.687654e-03	k: 2574	n:400000
TSC22D2   400000 perm   136 sec   (2951 perm/sec)   p_kst 6.435000e-03   p_cons 1.070500e-02   p_joint 7.325000e-04

Joint ci ratio: 2.297126e-01	ci left: 6.282680e-04	ci right 7.935544e-04	k: 290	n:410000
Cons ci ratio: 5.896134e-02	ci left: 1.035126e-02	ci right 1.098251e-02	k: 4372	n:410000
KS ci ratio: 7.625054e-02	ci left: 6.160576e-03	ci right 6.651317e-03	k: 2625	n:410000
TSC22D2   410000 perm   141 sec   (2912 perm/sec)   p_kst 6.402439e-03   p_cons 1.066341e-02   p_joint 7.073171e-04

Joint ci ratio: 1.492174e-01	ci left: 1.518052e-03	ci right 1.765095e-03	k: 688	n:420000
Cons ci ratio: 5.822011e-02	ci left: 1.036756e-02	ci right 1.099159e-02	k: 4484	n:420000
KS ci ratio: 7.530984e-02	ci left: 6.168061e-03	ci right 6.653072e-03	k: 2691	n:420000
TSC22D2   420000 perm   146 sec   (2882 perm/sec)   p_kst 6.407143e-03   p_cons 1.067619e-02   p_joint 1.638095e-03

Joint ci ratio: 1.508742e-01	ci left: 1.449170e-03	ci right 1.687859e-03	k: 673	n:430000
Cons ci ratio: 5.752514e-02	ci left: 1.037628e-02	ci right 1.099313e-02	k: 4593	n:430000
KS ci ratio: 7.447110e-02	ci left: 6.163821e-03	ci right 6.642867e-03	k: 2752	n:430000
TSC22D2   430000 perm   151 sec   (2853 perm/sec)   p_kst 6.400000e-03   p_cons 1.068140e-02   p_joint 1.565116e-03

Joint ci ratio: 1.486836e-01	ci left: 1.459986e-03	ci right 1.696655e-03	k: 693	n:440000
Cons ci ratio: 5.681175e-02	ci left: 1.040033e-02	ci right 1.101069e-02	k: 4709	n:440000
KS ci ratio: 7.371251e-02	ci left: 6.150878e-03	ci right 6.623839e-03	k: 2809	n:440000
TSC22D2   440000 perm   156 sec   (2822 perm/sec)   p_kst 6.384091e-03   p_cons 1.070227e-02   p_joint 1.575000e-03

Joint ci ratio: 1.469987e-01	ci left: 1.461783e-03	ci right 1.695821e-03	k: 709	n:450000
Cons ci ratio: 5.626585e-02	ci left: 1.037076e-02	ci right 1.097335e-02	k: 4801	n:450000
KS ci ratio: 7.296383e-02	ci left: 6.140716e-03	ci right 6.607897e-03	k: 2867	n:450000
TSC22D2   450000 perm   161 sec   (2794 perm/sec)   p_kst 6.371111e-03   p_cons 1.066889e-02   p_joint 1.575556e-03

Joint ci ratio: 1.550865e-01	ci left: 1.279385e-03	ci right 1.496539e-03	k: 637	n:460000
Cons ci ratio: 5.558062e-02	ci left: 1.040039e-02	ci right 1.099710e-02	k: 4920	n:460000
KS ci ratio: 7.199031e-02	ci left: 6.173718e-03	ci right 6.636880e-03	k: 2945	n:460000
TSC22D2   460000 perm   166 sec   (2766 perm/sec)   p_kst 6.402174e-03   p_cons 1.069565e-02   p_joint 1.384783e-03

Joint ci ratio: 1.553327e-01	ci left: 1.248072e-03	ci right 1.460279e-03	k: 635	n:470000
Cons ci ratio: 5.489232e-02	ci left: 1.043930e-02	ci right 1.103059e-02	k: 5044	n:470000
KS ci ratio: 7.110209e-02	ci left: 6.196994e-03	ci right 6.655931e-03	k: 3019	n:470000
TSC22D2   470000 perm   172 sec   (2739 perm/sec)   p_kst 6.423404e-03   p_cons 1.073191e-02   p_joint 1.351064e-03

Joint ci ratio: 1.582260e-01	ci left: 1.176030e-03	ci right 1.380066e-03	k: 612	n:480000
Cons ci ratio: 5.433532e-02	ci left: 1.043552e-02	ci right 1.102041e-02	k: 5148	n:480000
KS ci ratio: 7.030314e-02	ci left: 6.209100e-03	ci right 6.663555e-03	k: 3088	n:480000
TSC22D2   480000 perm   177 sec   (2713 perm/sec)   p_kst 6.433333e-03   p_cons 1.072500e-02   p_joint 1.275000e-03

Joint ci ratio: 1.672076e-01	ci left: 1.026725e-03	ci right 1.215988e-03	k: 548	n:490000
Cons ci ratio: 5.371232e-02	ci left: 1.046414e-02	ci right 1.104371e-02	k: 5268	n:490000
KS ci ratio: 6.955270e-02	ci left: 6.216728e-03	ci right 6.666689e-03	k: 3155	n:490000
TSC22D2   490000 perm   183 sec   (2684 perm/sec)   p_kst 6.438776e-03   p_cons 1.075102e-02   p_joint 1.118367e-03

Joint ci ratio: 1.658540e-01	ci left: 1.023440e-03	ci right 1.210418e-03	k: 557	n:500000
Cons ci ratio: 5.324024e-02	ci left: 1.044034e-02	ci right 1.101335e-02	k: 5362	n:500000
KS ci ratio: 6.884730e-02	ci left: 6.220145e-03	ci right 6.665604e-03	k: 3220	n:500000
TSC22D2   500000 perm   188 sec   (2659 perm/sec)   p_kst 6.440000e-03   p_cons 1.072400e-02   p_joint 1.114000e-03

Joint ci ratio: 1.657073e-01	ci left: 1.005252e-03	ci right 1.188727e-03	k: 558	n:510000
Cons ci ratio: 5.270723e-02	ci left: 1.044652e-02	ci right 1.101396e-02	k: 5471	n:510000
KS ci ratio: 6.808997e-02	ci left: 6.236942e-03	ci right 6.678497e-03	k: 3292	n:510000
TSC22D2   510000 perm   194 sec   (2634 perm/sec)   p_kst 6.454902e-03   p_cons 1.072745e-02   p_joint 1.094118e-03

Joint ci ratio: 1.750481e-01	ci left: 8.791288e-04	ci right 1.049587e-03	k: 500	n:520000
Cons ci ratio: 5.216629e-02	ci left: 1.046199e-02	ci right 1.102425e-02	k: 5585	n:520000
KS ci ratio: 6.748843e-02	ci left: 6.228538e-03	ci right 6.665450e-03	k: 3351	n:520000
TSC22D2   520000 perm   199 sec   (2609 perm/sec)   p_kst 6.444231e-03   p_cons 1.074038e-02   p_joint 9.615385e-04

Joint ci ratio: 1.766450e-01	ci left: 8.463065e-04	ci right 1.012057e-03	k: 491	n:530000
Cons ci ratio: 5.168293e-02	ci left: 1.046013e-02	ci right 1.101693e-02	k: 5690	n:530000
KS ci ratio: 6.686312e-02	ci left: 6.227890e-03	ci right 6.660551e-03	k: 3414	n:530000
TSC22D2   530000 perm   205 sec   (2583 perm/sec)   p_kst 6.441509e-03   p_cons 1.073585e-02   p_joint 9.264151e-04

Joint ci ratio: 1.738399e-01	ci left: 8.589647e-04	ci right 1.024243e-03	k: 507	n:540000
Cons ci ratio: 5.117707e-02	ci left: 1.047300e-02	ci right 1.102486e-02	k: 5803	n:540000
KS ci ratio: 6.624528e-02	ci left: 6.229105e-03	ci right 6.657698e-03	k: 3478	n:540000
TSC22D2   540000 perm   211 sec   (2557 perm/sec)   p_kst 6.440741e-03   p_cons 1.074630e-02   p_joint 9.388889e-04

Joint ci ratio: 1.718219e-01	ci left: 8.642217e-04	ci right 1.028381e-03	k: 519	n:550000
Cons ci ratio: 5.069011e-02	ci left: 1.048362e-02	ci right 1.103064e-02	k: 5915	n:550000
KS ci ratio: 6.555122e-02	ci left: 6.248179e-03	ci right 6.673409e-03	k: 3552	n:550000
TSC22D2   550000 perm   217 sec   (2532 perm/sec)   p_kst 6.458182e-03   p_cons 1.075455e-02   p_joint 9.436364e-04

Joint ci ratio: 1.705155e-01	ci left: 8.624629e-04	ci right 1.024914e-03	k: 527	n:560000
Cons ci ratio: 5.018734e-02	ci left: 1.050624e-02	ci right 1.104884e-02	k: 6034	n:560000
KS ci ratio: 6.489653e-02	ci left: 6.263080e-03	ci right 6.684907e-03	k: 3624	n:560000
TSC22D2   560000 perm   223 sec   (2506 perm/sec)   p_kst 6.471429e-03   p_cons 1.077500e-02   p_joint 9.410714e-04

Joint ci ratio: 1.755825e-01	ci left: 7.969770e-04	ci right 9.520280e-04	k: 497	n:570000
Cons ci ratio: 4.971149e-02	ci left: 1.052289e-02	ci right 1.106105e-02	k: 6150	n:570000
KS ci ratio: 6.428733e-02	ci left: 6.272300e-03	ci right 6.690635e-03	k: 3693	n:570000
TSC22D2   570000 perm   230 sec   (2482 perm/sec)   p_kst 6.478947e-03   p_cons 1.078947e-02   p_joint 8.719298e-04

Joint ci ratio: 1.792226e-01	ci left: 7.502827e-04	ci right 8.996036e-04	k: 477	n:580000
Cons ci ratio: 4.922115e-02	ci left: 1.055091e-02	ci right 1.108503e-02	k: 6273	n:580000
KS ci ratio: 6.376323e-02	ci left: 6.267645e-03	ci right 6.682136e-03	k: 3754	n:580000
TSC22D2   580000 perm   236 sec   (2460 perm/sec)   p_kst 6.472414e-03   p_cons 1.081552e-02   p_joint 8.224138e-04

Joint ci ratio: 1.360514e-01	ci left: 1.309476e-03	ci right 1.502253e-03	k: 828	n:590000
Cons ci ratio: 4.883385e-02	ci left: 1.053949e-02	ci right 1.106872e-02	k: 6373	n:590000
KS ci ratio: 6.322673e-02	ci left: 6.268166e-03	ci right 6.679076e-03	k: 3818	n:590000
TSC22D2   590000 perm   242 sec   (2437 perm/sec)   p_kst 6.471186e-03   p_cons 1.080169e-02   p_joint 1.403390e-03

Joint ci ratio: 1.365488e-01	ci left: 1.277991e-03	ci right 1.466876e-03	k: 822	n:600000
Cons ci ratio: 4.846313e-02	ci left: 1.052518e-02	ci right 1.104956e-02	k: 6471	n:600000
KS ci ratio: 6.274422e-02	ci left: 6.260480e-03	ci right 6.667640e-03	k: 3877	n:600000
TSC22D2   600000 perm   248 sec   (2416 perm/sec)   p_kst 6.461667e-03   p_cons 1.078500e-02   p_joint 1.370000e-03

Joint ci ratio: 1.356456e-01	ci left: 1.274459e-03	ci right 1.461476e-03	k: 833	n:610000
Cons ci ratio: 4.806745e-02	ci left: 1.052593e-02	ci right 1.104595e-02	k: 6578	n:610000
KS ci ratio: 6.227260e-02	ci left: 6.253058e-03	ci right 6.656569e-03	k: 3936	n:610000
TSC22D2   610000 perm   255 sec   (2395 perm/sec)   p_kst 6.452459e-03   p_cons 1.078361e-02   p_joint 1.365574e-03

Joint ci ratio: 1.144450e-01	ci left: 1.780595e-03	ci right 1.998295e-03	k: 1170	n:620000
Cons ci ratio: 4.766329e-02	ci left: 1.053464e-02	ci right 1.105059e-02	k: 6690	n:620000
KS ci ratio: 6.176479e-02	ci left: 6.255416e-03	ci right 6.655669e-03	k: 4001	n:620000
TSC22D2   620000 perm   261 sec   (2374 perm/sec)   p_kst 6.453226e-03   p_cons 1.079032e-02   p_joint 1.887097e-03

Joint ci ratio: 1.154386e-01	ci left: 1.721495e-03	ci right 1.933921e-03	k: 1150	n:630000
Cons ci ratio: 4.727970e-02	ci left: 1.053838e-02	ci right 1.105026e-02	k: 6799	n:630000
KS ci ratio: 6.120109e-02	ci left: 6.271779e-03	ci right 6.669287e-03	k: 4075	n:630000
TSC22D2   630000 perm   268 sec   (2354 perm/sec)   p_kst 6.468254e-03   p_cons 1.079206e-02   p_joint 1.825397e-03

Joint ci ratio: 1.165099e-01	ci left: 1.662733e-03	ci right 1.869943e-03	k: 1129	n:640000
Cons ci ratio: 4.691552e-02	ci left: 1.053740e-02	ci right 1.104517e-02	k: 6905	n:640000
KS ci ratio: 6.078537e-02	ci left: 6.259947e-03	ci right 6.653915e-03	k: 4131	n:640000
TSC22D2   640000 perm   274 sec   (2334 perm/sec)   p_kst 6.454688e-03   p_cons 1.078906e-02   p_joint 1.764063e-03

Joint ci ratio: 1.159475e-01	ci left: 1.653584e-03	ci right 1.858590e-03	k: 1140	n:650000
Cons ci ratio: 4.652946e-02	ci left: 1.055014e-02	ci right 1.105423e-02	k: 7020	n:650000
KS ci ratio: 6.034176e-02	ci left: 6.256065e-03	ci right 6.646815e-03	k: 4192	n:650000
TSC22D2   650000 perm   281 sec   (2313 perm/sec)   p_kst 6.449231e-03   p_cons 1.080000e-02   p_joint 1.753846e-03

Joint ci ratio: 1.152430e-01	ci left: 1.649128e-03	ci right 1.852255e-03	k: 1154	n:660000
Cons ci ratio: 4.616585e-02	ci left: 1.055652e-02	ci right 1.105688e-02	k: 7131	n:660000
KS ci ratio: 5.982286e-02	ci left: 6.270222e-03	ci right 6.658372e-03	k: 4265	n:660000
TSC22D2   660000 perm   288 sec   (2292 perm/sec)   p_kst 6.462121e-03   p_cons 1.080455e-02   p_joint 1.748485e-03

Joint ci ratio: 1.721682e-01	ci left: 7.065742e-04	ci right 8.410864e-04	k: 517	n:670000
Cons ci ratio: 4.579465e-02	ci left: 1.057011e-02	ci right 1.106697e-02	k: 7247	n:670000
KS ci ratio: 5.991772e-02	ci left: 6.157513e-03	ci right 6.539311e-03	k: 4252	n:670000
TSC22D2   670000 perm   295 sec   (2272 perm/sec)   p_kst 6.346269e-03   p_cons 1.081642e-02   p_joint 7.716418e-04

Joint ci ratio: 1.708539e-01	ci left: 7.074431e-04	ci right 8.409867e-04	k: 525	n:680000
Cons ci ratio: 4.549790e-02	ci left: 1.055277e-02	ci right 1.104552e-02	k: 7342	n:680000
KS ci ratio: 5.942343e-02	ci left: 6.169816e-03	ci right 6.549113e-03	k: 4323	n:680000
TSC22D2   680000 perm   302 sec   (2252 perm/sec)   p_kst 6.357353e-03   p_cons 1.079706e-02   p_joint 7.720588e-04

Joint ci ratio: 1.718385e-01	ci left: 6.888670e-04	ci right 8.197310e-04	k: 519	n:690000
Cons ci ratio: 4.514553e-02	ci left: 1.056462e-02	ci right 1.105400e-02	k: 7457	n:690000
KS ci ratio: 5.897494e-02	ci left: 6.174636e-03	ci right 6.551266e-03	k: 4389	n:690000
TSC22D2   690000 perm   309 sec   (2233 perm/sec)   p_kst 6.360870e-03   p_cons 1.080725e-02   p_joint 7.521739e-04

Joint ci ratio: 1.692533e-01	ci left: 7.009079e-04	ci right 8.318519e-04	k: 535	n:700000
Cons ci ratio: 4.473557e-02	ci left: 1.060721e-02	ci right 1.109399e-02	k: 7594	n:700000
KS ci ratio: 5.855630e-02	ci left: 6.175104e-03	ci right 6.548999e-03	k: 4452	n:700000
TSC22D2   700000 perm   316 sec   (2214 perm/sec)   p_kst 6.360000e-03   p_cons 1.084857e-02   p_joint 7.642857e-04

Joint ci ratio: 1.681588e-01	ci left: 7.004789e-04	ci right 8.304108e-04	k: 542	n:710000
Cons ci ratio: 4.440630e-02	ci left: 1.061520e-02	ci right 1.109867e-02	k: 7707	n:710000
KS ci ratio: 5.815941e-02	ci left: 6.172792e-03	ci right 6.543929e-03	k: 4513	n:710000
TSC22D2   710000 perm   323 sec   (2195 perm/sec)   p_kst 6.356338e-03   p_cons 1.085493e-02   p_joint 7.633803e-04

Joint ci ratio: 1.670854e-01	ci left: 7.000644e-04	ci right 8.290070e-04	k: 549	n:720000
Cons ci ratio: 4.412129e-02	ci left: 1.060511e-02	ci right 1.108494e-02	k: 7807	n:720000
KS ci ratio: 5.770705e-02	ci left: 6.184243e-03	ci right 6.553079e-03	k: 4584	n:720000
TSC22D2   720000 perm   331 sec   (2176 perm/sec)   p_kst 6.366667e-03   p_cons 1.084306e-02   p_joint 7.625000e-04

Joint ci ratio: 1.664815e-01	ci left: 6.957250e-04	ci right 8.233589e-04	k: 553	n:730000
Cons ci ratio: 4.379971e-02	ci left: 1.061564e-02	ci right 1.109236e-02	k: 7922	n:730000
KS ci ratio: 5.730845e-02	ci left: 6.185938e-03	ci right 6.552243e-03	k: 4648	n:730000
TSC22D2   730000 perm   338 sec   (2158 perm/sec)   p_kst 6.367123e-03   p_cons 1.085205e-02   p_joint 7.575342e-04

Joint ci ratio: 1.550057e-01	ci left: 7.965767e-04	ci right 9.317042e-04	k: 638	n:740000
Cons ci ratio: 4.352889e-02	ci left: 1.060451e-02	ci right 1.107771e-02	k: 8021	n:740000
KS ci ratio: 5.697277e-02	ci left: 6.175605e-03	ci right 6.539086e-03	k: 4703	n:740000
TSC22D2   740000 perm   346 sec   (2140 perm/sec)   p_kst 6.355405e-03   p_cons 1.083919e-02   p_joint 8.621622e-04

Joint ci ratio: 1.540445e-01	ci left: 7.962098e-04	ci right 9.303603e-04	k: 646	n:750000
Cons ci ratio: 4.325765e-02	ci left: 1.059632e-02	ci right 1.106614e-02	k: 8122	n:750000
KS ci ratio: 5.663095e-02	ci left: 6.168184e-03	ci right 6.528978e-03	k: 4760	n:750000
TSC22D2   750000 perm   353 sec   (2123 perm/sec)   p_kst 6.346667e-03   p_cons 1.082933e-02   p_joint 8.613333e-04

Joint ci ratio: 1.532181e-01	ci left: 7.945898e-04	ci right 9.276831e-04	k: 653	n:760000
Cons ci ratio: 4.293339e-02	ci left: 1.061700e-02	ci right 1.108411e-02	k: 8245	n:760000
KS ci ratio: 5.634230e-02	ci left: 6.150585e-03	ci right 6.508456e-03	k: 4809	n:760000
TSC22D2   760000 perm   361 sec   (2104 perm/sec)   p_kst 6.327632e-03   p_cons 1.084868e-02   p_joint 8.592105e-04

Joint ci ratio: 1.519453e-01	ci left: 7.980109e-04	ci right 9.304659e-04	k: 664	n:770000
Cons ci ratio: 4.265240e-02	ci left: 1.061916e-02	ci right 1.108323e-02	k: 8354	n:770000
KS ci ratio: 5.595381e-02	ci left: 6.156499e-03	ci right 6.512165e-03	k: 4876	n:770000
TSC22D2   770000 perm   369 sec   (2086 perm/sec)   p_kst 6.332468e-03   p_cons 1.084935e-02   p_joint 8.623377e-04

Joint ci ratio: 1.508155e-01	ci left: 8.001149e-04	ci right 9.318425e-04	k: 674	n:780000
Cons ci ratio: 4.237686e-02	ci left: 1.062127e-02	ci right 1.108237e-02	k: 8463	n:780000
KS ci ratio: 5.566397e-02	ci left: 6.142041e-03	ci right 6.494974e-03	k: 4927	n:780000
TSC22D2   780000 perm   377 sec   (2070 perm/sec)   p_kst 6.316667e-03   p_cons 1.085000e-02   p_joint 8.641026e-04

Joint ci ratio: 1.499297e-01	ci left: 7.997324e-04	ci right 9.305544e-04	k: 682	n:790000
Cons ci ratio: 4.212398e-02	ci left: 1.061458e-02	ci right 1.107257e-02	k: 8565	n:790000
KS ci ratio: 5.535062e-02	ci left: 6.134195e-03	ci right 6.484630e-03	k: 4983	n:790000
TSC22D2   790000 perm   385 sec   (2054 perm/sec)   p_kst 6.307595e-03   p_cons 1.084177e-02   p_joint 8.632911e-04

Joint ci ratio: 1.540487e-01	ci left: 7.464452e-04	ci right 8.722147e-04	k: 646	n:800000
Cons ci ratio: 4.183168e-02	ci left: 1.063032e-02	ci right 1.108573e-02	k: 8685	n:800000
KS ci ratio: 5.508101e-02	ci left: 6.117920e-03	ci right 6.465669e-03	k: 5032	n:800000
TSC22D2   800000 perm   393 sec   (2037 perm/sec)   p_kst 6.290000e-03   p_cons 1.085625e-02   p_joint 8.075000e-04

Joint ci ratio: 1.522928e-01	ci left: 7.550389e-04	ci right 8.806740e-04	k: 661	n:810000
Cons ci ratio: 4.157403e-02	ci left: 1.063103e-02	ci right 1.108359e-02	k: 8793	n:810000
KS ci ratio: 5.469090e-02	ci left: 6.130061e-03	ci right 6.475953e-03	k: 5104	n:810000
TSC22D2   810000 perm   401 sec   (2021 perm/sec)   p_kst 6.301235e-03   p_cons 1.085556e-02   p_joint 8.160494e-04

Joint ci ratio: 1.335230e-01	ci left: 9.798814e-04	ci right 1.121242e-03	k: 860	n:820000
Cons ci ratio: 4.130467e-02	ci left: 1.064017e-02	ci right 1.109012e-02	k: 8908	n:820000
KS ci ratio: 5.433537e-02	ci left: 6.135898e-03	ci right 6.479799e-03	k: 5171	n:820000
TSC22D2   820000 perm   409 sec   (2006 perm/sec)   p_kst 6.306098e-03   p_cons 1.086341e-02   p_joint 1.048780e-03

Joint ci ratio: 1.325261e-01	ci left: 9.832171e-04	ci right 1.123917e-03	k: 873	n:830000
Cons ci ratio: 4.106349e-02	ci left: 1.063718e-02	ci right 1.108432e-02	k: 9013	n:830000
KS ci ratio: 5.400224e-02	ci left: 6.138036e-03	ci right 6.479881e-03	k: 5235	n:830000
TSC22D2   830000 perm   417 sec   (1990 perm/sec)   p_kst 6.307229e-03   p_cons 1.085904e-02   p_joint 1.051807e-03

Joint ci ratio: 1.333697e-01	ci left: 9.588516e-04	ci right 1.097007e-03	k: 862	n:840000
Cons ci ratio: 4.077904e-02	ci left: 1.065901e-02	ci right 1.110389e-02	k: 9139	n:840000
KS ci ratio: 5.366498e-02	ci left: 6.142478e-03	ci right 6.482369e-03	k: 5301	n:840000
TSC22D2   840000 perm   425 sec   (1975 perm/sec)   p_kst 6.310714e-03   p_cons 1.087976e-02   p_joint 1.026190e-03

Joint ci ratio: 1.329088e-01	ci left: 9.543946e-04	ci right 1.091395e-03	k: 868	n:850000
Cons ci ratio: 4.056464e-02	ci left: 1.064657e-02	ci right 1.108854e-02	k: 9236	n:850000
KS ci ratio: 5.336399e-02	ci left: 6.139857e-03	ci right 6.477638e-03	k: 5361	n:850000
TSC22D2   850000 perm   434 sec   (1960 perm/sec)   p_kst 6.307059e-03   p_cons 1.086588e-02   p_joint 1.021176e-03

Joint ci ratio: 1.318507e-01	ci left: 9.590371e-04	ci right 1.095522e-03	k: 882	n:860000
Cons ci ratio: 4.030125e-02	ci left: 1.066205e-02	ci right 1.110172e-02	k: 9357	n:860000
KS ci ratio: 5.299918e-02	ci left: 6.153367e-03	ci right 6.489506e-03	k: 5435	n:860000
TSC22D2   860000 perm   442 sec   (1945 perm/sec)   p_kst 6.319767e-03   p_cons 1.088023e-02   p_joint 1.025581e-03

Joint ci ratio: 1.315535e-01	ci left: 9.524597e-04	ci right 1.087680e-03	k: 886	n:870000
Cons ci ratio: 4.010498e-02	ci left: 1.064418e-02	ci right 1.108093e-02	k: 9449	n:870000
KS ci ratio: 5.268026e-02	ci left: 6.157498e-03	ci right 6.491778e-03	k: 5501	n:870000
TSC22D2   870000 perm   451 sec   (1931 perm/sec)   p_kst 6.322989e-03   p_cons 1.086092e-02   p_joint 1.018391e-03

Joint ci ratio: 1.310377e-01	ci left: 9.493294e-04	ci right 1.083535e-03	k: 893	n:880000
Cons ci ratio: 3.986091e-02	ci left: 1.065372e-02	ci right 1.108814e-02	k: 9565	n:880000
KS ci ratio: 5.240967e-02	ci left: 6.151448e-03	ci right 6.483632e-03	k: 5558	n:880000
TSC22D2   880000 perm   459 sec   (1917 perm/sec)   p_kst 6.315909e-03   p_cons 1.086932e-02   p_joint 1.014773e-03

Joint ci ratio: 1.302389e-01	ci left: 9.506185e-04	ci right 1.084124e-03	k: 904	n:890000
Cons ci ratio: 3.963573e-02	ci left: 1.065527e-02	ci right 1.108725e-02	k: 9674	n:890000
KS ci ratio: 5.211053e-02	ci left: 6.153301e-03	ci right 6.483632e-03	k: 5622	n:890000
TSC22D2   890000 perm   468 sec   (1903 perm/sec)   p_kst 6.316854e-03   p_cons 1.086966e-02   p_joint 1.015730e-03

Joint ci ratio: 1.296672e-01	ci left: 9.486559e-04	ci right 1.081256e-03	k: 912	n:900000
Cons ci ratio: 3.938991e-02	ci left: 1.067000e-02	ci right 1.109982e-02	k: 9795	n:900000
KS ci ratio: 5.183481e-02	ci left: 6.150731e-03	ci right 6.479125e-03	k: 5682	n:900000
TSC22D2   900000 perm   476 sec   (1889 perm/sec)   p_kst 6.313333e-03   p_cons 1.088333e-02   p_joint 1.013333e-03

Joint ci ratio: 1.334524e-01	ci left: 8.840293e-04	ci right 1.011489e-03	k: 861	n:910000
Cons ci ratio: 3.918057e-02	ci left: 1.066700e-02	ci right 1.109437e-02	k: 9900	n:910000
KS ci ratio: 5.147779e-02	ci left: 6.168834e-03	ci right 6.495858e-03	k: 5761	n:910000
TSC22D2   910000 perm   485 sec   (1876 perm/sec)   p_kst 6.330769e-03   p_cons 1.087912e-02   p_joint 9.461538e-04

Joint ci ratio: 1.329906e-01	ci left: 8.807246e-04	ci right 1.007234e-03	k: 867	n:920000
Cons ci ratio: 3.898635e-02	ci left: 1.065761e-02	ci right 1.108244e-02	k: 9999	n:920000
KS ci ratio: 5.126957e-02	ci left: 6.152211e-03	ci right 6.476996e-03	k: 5808	n:920000
TSC22D2   920000 perm   494 sec   (1862 perm/sec)   p_kst 6.313043e-03   p_cons 1.086848e-02   p_joint 9.423913e-04

Joint ci ratio: 1.320055e-01	ci left: 8.847697e-04	ci right 1.010845e-03	k: 880	n:930000
Cons ci ratio: 3.877365e-02	ci left: 1.066014e-02	ci right 1.108270e-02	k: 10109	n:930000
KS ci ratio: 5.095888e-02	ci left: 6.161427e-03	ci right 6.484670e-03	k: 5879	n:930000
TSC22D2   930000 perm   503 sec   (1849 perm/sec)   p_kst 6.321505e-03   p_cons 1.086989e-02   p_joint 9.462366e-04

Joint ci ratio: 1.312626e-01	ci left: 8.856452e-04	ci right 1.011080e-03	k: 890	n:940000
Cons ci ratio: 3.857394e-02	ci left: 1.065736e-02	ci right 1.107758e-02	k: 10214	n:940000
KS ci ratio: 5.064092e-02	ci left: 6.173605e-03	ci right 6.495406e-03	k: 5953	n:940000
TSC22D2   940000 perm   512 sec   (1836 perm/sec)   p_kst 6.332979e-03   p_cons 1.086596e-02   p_joint 9.468085e-04

Joint ci ratio: 1.317079e-01	ci left: 8.702142e-04	ci right 9.939139e-04	k: 884	n:950000
Cons ci ratio: 3.834724e-02	ci left: 1.067132e-02	ci right 1.108957e-02	k: 10335	n:950000
KS ci ratio: 5.036670e-02	ci left: 6.176177e-03	ci right 6.496318e-03	k: 6018	n:950000
TSC22D2   950000 perm   521 sec   (1823 perm/sec)   p_kst 6.334737e-03   p_cons 1.087895e-02   p_joint 9.305263e-04

Joint ci ratio: 1.308238e-01	ci left: 8.732390e-04	ci right 9.964708e-04	k: 896	n:960000
Cons ci ratio: 3.817434e-02	ci left: 1.065714e-02	ci right 1.107291e-02	k: 10429	n:960000
KS ci ratio: 5.003897e-02	ci left: 6.193102e-03	ci right 6.511971e-03	k: 6097	n:960000
TSC22D2   960000 perm   530 sec   (1810 perm/sec)   p_kst 6.351042e-03   p_cons 1.086354e-02   p_joint 9.333333e-04

Joint ci ratio: 1.302443e-01	ci left: 8.722146e-04	ci right 9.947145e-04	k: 904	n:970000
Cons ci ratio: 3.798735e-02	ci left: 1.065244e-02	ci right 1.106595e-02	k: 10532	n:970000
KS ci ratio: 4.979876e-02	ci left: 6.189320e-03	ci right 6.506422e-03	k: 6156	n:970000
TSC22D2   970000 perm   539 sec   (1798 perm/sec)   p_kst 6.346392e-03   p_cons 1.085773e-02   p_joint 9.319588e-04

Joint ci ratio: 1.317843e-01	ci left: 8.425874e-04	ci right 9.624349e-04	k: 883	n:980000
Cons ci ratio: 3.775465e-02	ci left: 1.067514e-02	ci right 1.108694e-02	k: 10662	n:980000
KS ci ratio: 4.951790e-02	ci left: 6.196706e-03	ci right 6.512344e-03	k: 6226	n:980000
TSC22D2   980000 perm   549 sec   (1787 perm/sec)   p_kst 6.353061e-03   p_cons 1.087959e-02   p_joint 9.010204e-04

Joint ci ratio: 1.314875e-01	ci left: 8.379836e-04	ci right 9.568869e-04	k: 887	n:990000
Cons ci ratio: 3.758432e-02	ci left: 1.066437e-02	ci right 1.107385e-02	k: 10759	n:990000
KS ci ratio: 4.929298e-02	ci left: 6.190977e-03	ci right 6.504851e-03	k: 6283	n:990000
TSC22D2   990000 perm   558 sec   (1775 perm/sec)   p_kst 6.346465e-03   p_cons 1.086768e-02   p_joint 8.959596e-04

Joint ci ratio: 1.316366e-01	ci left: 8.276693e-04	ci right 9.452526e-04	k: 885	n:1000000
Cons ci ratio: 3.738148e-02	ci left: 1.067363e-02	ci right 1.108121e-02	k: 10876	n:1000000
KS ci ratio: 4.900502e-02	ci left: 6.202159e-03	ci right 6.514711e-03	k: 6357	n:1000000
TSC22D2   1000000 perm   567 sec   (1764 perm/sec)   p_kst 6.357000e-03   p_cons 1.087600e-02   p_joint 8.850000e-04

Joint ci ratio: 1.234067e-01	ci left: 9.364205e-04	ci right 1.060529e-03	k: 1007	n:1010000
Cons ci ratio: 3.719556e-02	ci left: 1.067487e-02	ci right 1.108042e-02	k: 10985	n:1010000
KS ci ratio: 4.870681e-02	ci left: 6.217037e-03	ci right 6.528378e-03	k: 6435	n:1010000
TSC22D2   1010000 perm   577 sec   (1751 perm/sec)   p_kst 6.371287e-03   p_cons 1.087624e-02   p_joint 9.970297e-04

Joint ci ratio: 1.271223e-01	ci left: 8.721567e-04	ci right 9.914909e-04	k: 949	n:1020000
Cons ci ratio: 3.703265e-02	ci left: 1.066443e-02	ci right 1.106777e-02	k: 11082	n:1020000
KS ci ratio: 4.847768e-02	ci left: 6.215163e-03	ci right 6.524905e-03	k: 6496	n:1020000
TSC22D2   1020000 perm   587 sec   (1739 perm/sec)   p_kst 6.368627e-03   p_cons 1.086471e-02   p_joint 9.303922e-04

Joint ci ratio: 1.262611e-01	ci left: 8.759106e-04	ci right 9.948858e-04	k: 962	n:1030000
Cons ci ratio: 3.681531e-02	ci left: 1.068690e-02	ci right 1.108867e-02	k: 11213	n:1030000
KS ci ratio: 4.826287e-02	ci left: 6.210451e-03	ci right 6.518549e-03	k: 6554	n:1030000
TSC22D2   1030000 perm   596 sec   (1727 perm/sec)   p_kst 6.363107e-03   p_cons 1.088641e-02   p_joint 9.339806e-04

Joint ci ratio: 1.265910e-01	ci left: 8.628324e-04	ci right 9.803604e-04	k: 957	n:1040000
Cons ci ratio: 3.661480e-02	ci left: 1.070133e-02	ci right 1.110140e-02	k: 11336	n:1040000
KS ci ratio: 4.798157e-02	ci left: 6.223884e-03	ci right 6.530798e-03	k: 6631	n:1040000
TSC22D2   1040000 perm   606 sec   (1716 perm/sec)   p_kst 6.375962e-03   p_cons 1.090000e-02   p_joint 9.201923e-04

Joint ci ratio: 1.267241e-01	ci left: 8.527702e-04	ci right 9.690589e-04	k: 955	n:1050000
Cons ci ratio: 3.644487e-02	ci left: 1.069944e-02	ci right 1.109755e-02	k: 11442	n:1050000
KS ci ratio: 4.773736e-02	ci left: 6.228596e-03	ci right 6.534137e-03	k: 6699	n:1050000
TSC22D2   1050000 perm   616 sec   (1705 perm/sec)   p_kst 6.380000e-03   p_cons 1.089714e-02   p_joint 9.095238e-04

Joint ci ratio: 1.287629e-01	ci left: 8.173267e-04	ci right 9.307122e-04	k: 925	n:1060000
Cons ci ratio: 3.628364e-02	ci left: 1.069385e-02	ci right 1.108996e-02	k: 11544	n:1060000
KS ci ratio: 4.752512e-02	ci left: 6.225765e-03	ci right 6.529772e-03	k: 6759	n:1060000
TSC22D2   1060000 perm   626 sec   (1694 perm/sec)   p_kst 6.376415e-03   p_cons 1.089057e-02   p_joint 8.726415e-04

Joint ci ratio: 1.283479e-01	ci left: 8.151152e-04	ci right 9.278018e-04	k: 931	n:1070000
Cons ci ratio: 3.611513e-02	ci left: 1.069393e-02	ci right 1.108816e-02	k: 11652	n:1070000
KS ci ratio: 4.729127e-02	ci left: 6.229455e-03	ci right 6.532105e-03	k: 6826	n:1070000
TSC22D2   1070000 perm   636 sec   (1683 perm/sec)   p_kst 6.379439e-03   p_cons 1.088972e-02   p_joint 8.700935e-04

Joint ci ratio: 1.277326e-01	ci left: 8.156343e-04	ci right 9.278111e-04	k: 940	n:1080000
Cons ci ratio: 3.595203e-02	ci left: 1.069218e-02	ci right 1.108453e-02	k: 11758	n:1080000
KS ci ratio: 4.707459e-02	ci left: 6.229420e-03	ci right 6.530644e-03	k: 6889	n:1080000
TSC22D2   1080000 perm   646 sec   (1672 perm/sec)   p_kst 6.378704e-03   p_cons 1.088704e-02   p_joint 8.703704e-04

Joint ci ratio: 1.268591e-01	ci left: 8.196983e-04	ci right 9.316051e-04	k: 953	n:1090000
Cons ci ratio: 3.578655e-02	ci left: 1.069319e-02	ci right 1.108373e-02	k: 11867	n:1090000
KS ci ratio: 4.688121e-02	ci left: 6.223948e-03	ci right 6.523638e-03	k: 6946	n:1090000
TSC22D2   1090000 perm   656 sec   (1662 perm/sec)   p_kst 6.372477e-03   p_cons 1.088716e-02   p_joint 8.743119e-04

Joint ci ratio: 1.267267e-01	ci left: 8.140069e-04	ci right 9.250120e-04	k: 955	n:1100000
Cons ci ratio: 3.566852e-02	ci left: 1.066715e-02	ci right 1.105543e-02	k: 11946	n:1100000
KS ci ratio: 4.664331e-02	ci left: 6.231158e-03	ci right 6.529632e-03	k: 7017	n:1100000
TSC22D2   1100000 perm   666 sec   (1651 perm/sec)   p_kst 6.379091e-03   p_cons 1.086000e-02   p_joint 8.681818e-04

Joint ci ratio: 1.261343e-01	ci left: 8.145252e-04	ci right 9.250430e-04	k: 964	n:1110000
Cons ci ratio: 3.550989e-02	ci left: 1.066659e-02	ci right 1.105309e-02	k: 12053	n:1110000
KS ci ratio: 4.641888e-02	ci left: 6.235571e-03	ci right 6.532780e-03	k: 7085	n:1110000
TSC22D2   1110000 perm   676 sec   (1641 perm/sec)   p_kst 6.382883e-03   p_cons 1.085856e-02   p_joint 8.684685e-04

Joint ci ratio: 1.267277e-01	ci left: 7.994707e-04	ci right 9.084944e-04	k: 955	n:1120000
Cons ci ratio: 3.533426e-02	ci left: 1.067755e-02	ci right 1.106249e-02	k: 12173	n:1120000
KS ci ratio: 4.625300e-02	ci left: 6.224903e-03	ci right 6.520515e-03	k: 7136	n:1120000
TSC22D2   1120000 perm   687 sec   (1631 perm/sec)   p_kst 6.371429e-03   p_cons 1.086875e-02   p_joint 8.526786e-04

Joint ci ratio: 1.260047e-01	ci left: 8.018226e-04	ci right 9.104966e-04	k: 966	n:1130000
Cons ci ratio: 3.518437e-02	ci left: 1.067428e-02	ci right 1.105744e-02	k: 12277	n:1130000
KS ci ratio: 4.603734e-02	ci left: 6.228424e-03	ci right 6.522788e-03	k: 7203	n:1130000
TSC22D2   1130000 perm   697 sec   (1621 perm/sec)   p_kst 6.374336e-03   p_cons 1.086460e-02   p_joint 8.548673e-04

Joint ci ratio: 1.149869e-01	ci left: 9.598502e-04	ci right 1.077796e-03	k: 1160	n:1140000
Cons ci ratio: 3.503208e-02	ci left: 1.067368e-02	ci right 1.105513e-02	k: 12384	n:1140000
KS ci ratio: 4.583102e-02	ci left: 6.230151e-03	ci right 6.523242e-03	k: 7268	n:1140000
TSC22D2   1140000 perm   707 sec   (1612 perm/sec)   p_kst 6.375439e-03   p_cons 1.086316e-02   p_joint 1.017544e-03

Joint ci ratio: 1.146912e-01	ci left: 9.565712e-04	ci right 1.073791e-03	k: 1166	n:1150000
Cons ci ratio: 3.487892e-02	ci left: 1.067482e-02	ci right 1.105461e-02	k: 12493	n:1150000
KS ci ratio: 4.565565e-02	ci left: 6.224114e-03	ci right 6.515772e-03	k: 7324	n:1150000
TSC22D2   1150000 perm   718 sec   (1601 perm/sec)   p_kst 6.368696e-03   p_cons 1.086348e-02   p_joint 1.013913e-03

Joint ci ratio: 1.153866e-01	ci left: 9.366026e-04	ci right 1.052119e-03	k: 1152	n:1160000
Cons ci ratio: 3.474728e-02	ci left: 1.066398e-02	ci right 1.104192e-02	k: 12588	n:1160000
KS ci ratio: 4.545439e-02	ci left: 6.225855e-03	ci right 6.516274e-03	k: 7389	n:1160000
TSC22D2   1160000 perm   729 sec   (1592 perm/sec)   p_kst 6.369828e-03   p_cons 1.085172e-02   p_joint 9.931034e-04

Joint ci ratio: 1.147414e-01	ci left: 9.393889e-04	ci right 1.054557e-03	k: 1165	n:1170000
Cons ci ratio: 3.459919e-02	ci left: 1.066434e-02	ci right 1.104065e-02	k: 12696	n:1170000
KS ci ratio: 4.525578e-02	ci left: 6.227568e-03	ci right 6.516764e-03	k: 7454	n:1170000
TSC22D2   1170000 perm   739 sec   (1583 perm/sec)   p_kst 6.370940e-03   p_cons 1.085128e-02   p_joint 9.957265e-04

Joint ci ratio: 1.140585e-01	ci left: 9.429529e-04	ci right 1.057824e-03	k: 1179	n:1180000
Cons ci ratio: 3.447476e-02	ci left: 1.065126e-02	ci right 1.102573e-02	k: 12788	n:1180000
KS ci ratio: 4.501759e-02	ci left: 6.240986e-03	ci right 6.529241e-03	k: 7533	n:1180000
TSC22D2   1180000 perm   749 sec   (1574 perm/sec)   p_kst 6.383898e-03   p_cons 1.083729e-02   p_joint 9.991525e-04

Joint ci ratio: 1.095512e-01	ci left: 1.015899e-03	ci right 1.134450e-03	k: 1278	n:1190000
Cons ci ratio: 3.431801e-02	ci left: 1.065922e-02	ci right 1.103224e-02	k: 12905	n:1190000
KS ci ratio: 4.482462e-02	ci left: 6.242549e-03	ci right 6.529609e-03	k: 7598	n:1190000
TSC22D2   1190000 perm   760 sec   (1565 perm/sec)   p_kst 6.384874e-03   p_cons 1.084454e-02   p_joint 1.073950e-03

Joint ci ratio: 1.089985e-01	ci left: 1.017970e-03	ci right 1.136126e-03	k: 1291	n:1200000
Cons ci ratio: 3.413425e-02	ci left: 1.068524e-02	ci right 1.105713e-02	k: 13044	n:1200000
KS ci ratio: 4.460483e-02	ci left: 6.252330e-03	ci right 6.538393e-03	k: 7673	n:1200000
TSC22D2   1200000 perm   771 sec   (1557 perm/sec)   p_kst 6.394167e-03   p_cons 1.087000e-02   p_joint 1.075833e-03

Joint ci ratio: 1.085792e-01	ci left: 1.017597e-03	ci right 1.135226e-03	k: 1301	n:1210000
Cons ci ratio: 3.398338e-02	ci left: 1.069199e-02	ci right 1.106243e-02	k: 13160	n:1210000
KS ci ratio: 4.432209e-02	ci left: 6.280751e-03	ci right 6.566247e-03	k: 7771	n:1210000
TSC22D2   1210000 perm   782 sec   (1548 perm/sec)   p_kst 6.422314e-03   p_cons 1.087603e-02   p_joint 1.075207e-03

Joint ci ratio: 1.079589e-01	ci left: 1.021218e-03	ci right 1.138548e-03	k: 1316	n:1220000
Cons ci ratio: 3.384739e-02	ci left: 1.069049e-02	ci right 1.105937e-02	k: 13266	n:1220000
KS ci ratio: 4.415490e-02	ci left: 6.277095e-03	ci right 6.561321e-03	k: 7830	n:1220000
TSC22D2   1220000 perm   793 sec   (1539 perm/sec)   p_kst 6.418033e-03   p_cons 1.087377e-02   p_joint 1.078689e-03

Joint ci ratio: 1.085384e-01	ci left: 1.001841e-03	ci right 1.117602e-03	k: 1302	n:1230000
Cons ci ratio: 3.372832e-02	ci left: 1.067936e-02	ci right 1.104653e-02	k: 13360	n:1230000
KS ci ratio: 4.396157e-02	ci left: 6.281542e-03	ci right 6.564692e-03	k: 7899	n:1230000
TSC22D2   1230000 perm   803 sec   (1531 perm/sec)   p_kst 6.421951e-03   p_cons 1.086179e-02   p_joint 1.058537e-03

Joint ci ratio: 1.083725e-01	ci left: 9.968998e-04	ci right 1.111903e-03	k: 1306	n:1240000
Cons ci ratio: 3.359409e-02	ci left: 1.067880e-02	ci right 1.104446e-02	k: 13467	n:1240000
KS ci ratio: 4.378734e-02	ci left: 6.281133e-03	ci right 6.563115e-03	k: 7962	n:1240000
TSC22D2   1240000 perm   814 sec   (1523 perm/sec)   p_kst 6.420968e-03   p_cons 1.086048e-02   p_joint 1.053226e-03

Joint ci ratio: 1.082901e-01	ci left: 9.904811e-04	ci right 1.104651e-03	k: 1308	n:1250000
Cons ci ratio: 3.344652e-02	ci left: 1.068777e-02	ci right 1.105210e-02	k: 13586	n:1250000
KS ci ratio: 4.359331e-02	ci left: 6.287064e-03	ci right 6.568030e-03	k: 8033	n:1250000
TSC22D2   1250000 perm   826 sec   (1514 perm/sec)   p_kst 6.426400e-03   p_cons 1.086880e-02   p_joint 1.046400e-03

Joint ci ratio: 1.110865e-01	ci left: 9.324463e-04	ci right 1.042884e-03	k: 1243	n:1260000
Cons ci ratio: 3.330701e-02	ci left: 1.069267e-02	ci right 1.105562e-02	k: 13700	n:1260000
KS ci ratio: 4.340453e-02	ci left: 6.292119e-03	ci right 6.572062e-03	k: 8103	n:1260000
TSC22D2   1260000 perm   837 sec   (1506 perm/sec)   p_kst 6.430952e-03   p_cons 1.087302e-02   p_joint 9.865079e-04

Joint ci ratio: 1.104664e-01	ci left: 9.358225e-04	ci right 1.046001e-03	k: 1257	n:1270000
Cons ci ratio: 3.318137e-02	ci left: 1.068968e-02	ci right 1.105114e-02	k: 13804	n:1270000
KS ci ratio: 4.321818e-02	ci left: 6.297096e-03	ci right 6.576028e-03	k: 8173	n:1270000
TSC22D2   1270000 perm   848 sec   (1498 perm/sec)   p_kst 6.435433e-03   p_cons 1.086929e-02   p_joint 9.897638e-04

Joint ci ratio: 1.099432e-01	ci left: 9.376280e-04	ci right 1.047463e-03	k: 1269	n:1280000
Cons ci ratio: 3.307398e-02	ci left: 1.067590e-02	ci right 1.103570e-02	k: 13894	n:1280000
KS ci ratio: 4.305787e-02	ci left: 6.295042e-03	ci right 6.572823e-03	k: 8234	n:1280000
TSC22D2   1280000 perm   859 sec   (1490 perm/sec)   p_kst 6.432813e-03   p_cons 1.085469e-02   p_joint 9.914063e-04

Joint ci ratio: 1.095558e-01	ci left: 9.371448e-04	ci right 1.046511e-03	k: 1278	n:1290000
Cons ci ratio: 3.295572e-02	ci left: 1.067002e-02	ci right 1.102831e-02	k: 13994	n:1290000
KS ci ratio: 4.289413e-02	ci left: 6.294556e-03	ci right 6.571233e-03	k: 8297	n:1290000
TSC22D2   1290000 perm   871 sec   (1481 perm/sec)   p_kst 6.431783e-03   p_cons 1.084806e-02   p_joint 9.906977e-04

Joint ci ratio: 1.090453e-01	ci left: 9.389145e-04	ci right 1.047944e-03	k: 1290	n:1300000
Cons ci ratio: 3.282930e-02	ci left: 1.067033e-02	ci right 1.102724e-02	k: 14102	n:1300000
KS ci ratio: 4.272967e-02	ci left: 6.294840e-03	ci right 6.570443e-03	k: 8361	n:1300000
TSC22D2   1300000 perm   883 sec   (1473 perm/sec)   p_kst 6.431538e-03   p_cons 1.084769e-02   p_joint 9.923077e-04

Joint ci ratio: 1.086672e-01	ci left: 9.384304e-04	ci right 1.047001e-03	k: 1299	n:1310000
Cons ci ratio: 3.266947e-02	ci left: 1.069336e-02	ci right 1.104926e-02	k: 14240	n:1310000
KS ci ratio: 4.256709e-02	ci left: 6.295122e-03	ci right 6.569663e-03	k: 8425	n:1310000
TSC22D2   1310000 perm   894 sec   (1465 perm/sec)   p_kst 6.431298e-03   p_cons 1.087023e-02   p_joint 9.916031e-04

Joint ci ratio: 1.082103e-01	ci left: 9.394284e-04	ci right 1.047629e-03	k: 1310	n:1320000
Cons ci ratio: 3.253943e-02	ci left: 1.069801e-02	ci right 1.105262e-02	k: 14354	n:1320000
KS ci ratio: 4.236368e-02	ci left: 6.308144e-03	ci right 6.581907e-03	k: 8506	n:1320000
TSC22D2   1320000 perm   906 sec   (1457 perm/sec)   p_kst 6.443939e-03   p_cons 1.087424e-02   p_joint 9.924242e-04

Joint ci ratio: 1.077592e-01	ci left: 9.404123e-04	ci right 1.048246e-03	k: 1321	n:1330000
Cons ci ratio: 3.244494e-02	ci left: 1.068022e-02	ci right 1.103319e-02	k: 14438	n:1330000
KS ci ratio: 4.223748e-02	ci left: 6.298654e-03	ci right 6.571171e-03	k: 8557	n:1330000
TSC22D2   1330000 perm   918 sec   (1449 perm/sec)   p_kst 6.433835e-03   p_cons 1.085564e-02   p_joint 9.932331e-04

Joint ci ratio: 1.071127e-01	ci left: 9.450139e-04	ci right 1.052684e-03	k: 1337	n:1340000
Cons ci ratio: 3.232766e-02	ci left: 1.067824e-02	ci right 1.102985e-02	k: 14543	n:1340000
KS ci ratio: 4.206816e-02	ci left: 6.302599e-03	ci right 6.574167e-03	k: 8626	n:1340000
TSC22D2   1340000 perm   929 sec   (1442 perm/sec)   p_kst 6.437313e-03   p_cons 1.085299e-02   p_joint 9.977612e-04

Joint ci ratio: 1.066750e-01	ci left: 9.459441e-04	ci right 1.053252e-03	k: 1348	n:1350000
Cons ci ratio: 3.219830e-02	ci left: 1.068511e-02	ci right 1.103551e-02	k: 14660	n:1350000
KS ci ratio: 4.191784e-02	ci left: 6.301357e-03	ci right 6.571878e-03	k: 8688	n:1350000
TSC22D2   1350000 perm   941 sec   (1434 perm/sec)   p_kst 6.435556e-03   p_cons 1.085926e-02   p_joint 9.985185e-04

Joint ci ratio: 1.063210e-01	ci left: 9.454300e-04	ci right 1.052302e-03	k: 1357	n:1360000
Cons ci ratio: 3.207927e-02	ci left: 1.068605e-02	ci right 1.103516e-02	k: 14769	n:1360000
KS ci ratio: 4.174272e-02	ci left: 6.308139e-03	ci right 6.577793e-03	k: 8761	n:1360000
TSC22D2   1360000 perm   954 sec   (1426 perm/sec)   p_kst 6.441912e-03   p_cons 1.085956e-02   p_joint 9.977941e-04

Joint ci ratio: 1.060871e-01	ci left: 9.427922e-04	ci right 1.049116e-03	k: 1363	n:1370000
Cons ci ratio: 3.196372e-02	ci left: 1.068552e-02	ci right 1.103334e-02	k: 14876	n:1370000
KS ci ratio: 4.161484e-02	ci left: 6.301099e-03	ci right 6.569607e-03	k: 8815	n:1370000
TSC22D2   1370000 perm   966 sec   (1419 perm/sec)   p_kst 6.434307e-03   p_cons 1.085839e-02   p_joint 9.948905e-04

Joint ci ratio: 1.066367e-01	ci left: 9.260849e-04	ci right 1.031100e-03	k: 1349	n:1380000
Cons ci ratio: 3.186446e-02	ci left: 1.067494e-02	ci right 1.102132e-02	k: 14969	n:1380000
KS ci ratio: 4.147872e-02	ci left: 6.297031e-03	ci right 6.564467e-03	k: 8873	n:1380000
TSC22D2   1380000 perm   978 sec   (1412 perm/sec)   p_kst 6.429710e-03   p_cons 1.084710e-02   p_joint 9.775362e-04

Joint ci ratio: 1.063222e-01	ci left: 9.250246e-04	ci right 1.029591e-03	k: 1357	n:1390000
Cons ci ratio: 3.173844e-02	ci left: 1.068308e-02	ci right 1.102832e-02	k: 15088	n:1390000
KS ci ratio: 4.133694e-02	ci left: 6.295159e-03	ci right 6.561580e-03	k: 8934	n:1390000
TSC22D2   1390000 perm   990 sec   (1405 perm/sec)   p_kst 6.427338e-03   p_cons 1.085468e-02   p_joint 9.762590e-04

Joint ci ratio: 1.061271e-01	ci left: 9.218937e-04	ci right 1.025903e-03	k: 1362	n:1400000
Cons ci ratio: 3.164864e-02	ci left: 1.066771e-02	ci right 1.101146e-02	k: 15174	n:1400000
KS ci ratio: 4.121966e-02	ci left: 6.286246e-03	ci right 6.551517e-03	k: 8985	n:1400000
TSC22D2   1400000 perm   1002 sec   (1398 perm/sec)   p_kst 6.417857e-03   p_cons 1.083857e-02   p_joint 9.728571e-04

Joint ci ratio: 1.056245e-01	ci left: 9.243312e-04	ci right 1.028091e-03	k: 1375	n:1410000
Cons ci ratio: 3.152307e-02	ci left: 1.067719e-02	ci right 1.101986e-02	k: 15295	n:1410000
KS ci ratio: 4.107137e-02	ci left: 6.287288e-03	ci right 6.551625e-03	k: 9050	n:1410000
TSC22D2   1410000 perm   1015 sec   (1390 perm/sec)   p_kst 6.418440e-03   p_cons 1.084752e-02   p_joint 9.751773e-04

Joint ci ratio: 1.093044e-01	ci left: 8.554576e-04	ci right 9.550468e-04	k: 1284	n:1420000
Cons ci ratio: 3.140722e-02	ci left: 1.068095e-02	ci right 1.102246e-02	k: 15408	n:1420000
KS ci ratio: 4.089308e-02	ci left: 6.298075e-03	ci right 6.561690e-03	k: 9129	n:1420000
TSC22D2   1420000 perm   1027 sec   (1383 perm/sec)   p_kst 6.428873e-03   p_cons 1.085070e-02   p_joint 9.042254e-04

Joint ci ratio: 1.087975e-01	ci left: 8.576382e-04	ci right 9.569885e-04	k: 1296	n:1430000
Cons ci ratio: 3.127329e-02	ci left: 1.069785e-02	ci right 1.103840e-02	k: 15540	n:1430000
KS ci ratio: 4.077730e-02	ci left: 6.290025e-03	ci right 6.552540e-03	k: 9181	n:1430000
TSC22D2   1430000 perm   1040 sec   (1375 perm/sec)   p_kst 6.420280e-03   p_cons 1.086713e-02   p_joint 9.062937e-04

Joint ci ratio: 1.082975e-01	ci left: 8.597895e-04	ci right 9.589022e-04	k: 1308	n:1440000
Cons ci ratio: 3.118132e-02	ci left: 1.068694e-02	ci right 1.102614e-02	k: 15632	n:1440000
KS ci ratio: 4.064699e-02	ci left: 6.286899e-03	ci right 6.548425e-03	k: 9240	n:1440000
TSC22D2   1440000 perm   1053 sec   (1368 perm/sec)   p_kst 6.416667e-03   p_cons 1.085556e-02   p_joint 9.083333e-04

Joint ci ratio: 1.081326e-01	ci left: 8.565438e-04	ci right 9.551224e-04	k: 1312	n:1450000
Cons ci ratio: 3.108316e-02	ci left: 1.068099e-02	ci right 1.101890e-02	k: 15731	n:1450000
KS ci ratio: 4.053109e-02	ci left: 6.279721e-03	ci right 6.540187e-03	k: 9293	n:1450000
TSC22D2   1450000 perm   1065 sec   (1361 perm/sec)   p_kst 6.408966e-03   p_cons 1.084897e-02   p_joint 9.048276e-04

Joint ci ratio: 1.077232e-01	ci left: 8.573415e-04	ci right 9.556146e-04	k: 1322	n:1460000
Cons ci ratio: 3.097109e-02	ci left: 1.068531e-02	ci right 1.102212e-02	k: 15845	n:1460000
KS ci ratio: 4.038574e-02	ci left: 6.282136e-03	ci right 6.541746e-03	k: 9360	n:1460000
TSC22D2   1460000 perm   1078 sec   (1354 perm/sec)   p_kst 6.410959e-03   p_cons 1.085274e-02   p_joint 9.054795e-04

Joint ci ratio: 9.819268e-02	ci left: 1.029805e-03	ci right 1.136802e-03	k: 1591	n:1470000
Cons ci ratio: 3.087489e-02	ci left: 1.067944e-02	ci right 1.101501e-02	k: 15944	n:1470000
KS ci ratio: 4.022477e-02	ci left: 6.289907e-03	ci right 6.548778e-03	k: 9435	n:1470000
TSC22D2   1470000 perm   1092 sec   (1346 perm/sec)   p_kst 6.418367e-03   p_cons 1.084626e-02   p_joint 1.082313e-03

Outputting figure to mutsig2_images.part000000000183/TSC22D2.3_2359_1470000_0.0064184_0.010846_0.0010823.png
                gene_name: TSC22D2
               theta_stop: 0.098 
                    nperm: 1470000 
                     p_ks: 0.0064 
        ci_ks_bounds_left: 0.0063 
       ci_ks_bounds_right: 0.0065 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.0011 
     ci_joint_bounds_left: 0.0010 
    ci_joint_bounds_right: 0.0011 

Current progress: 53 percent done.
TSEN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.183877e-02	ci left: 3.542622e-01	ci right 3.732173e-01	k: 3637	n:10000
Cons ci ratio: 6.663364e-02	ci left: 2.484571e-01	ci right 2.656846e-01	k: 2570	n:10000
KS ci ratio: 8.695309e-02	ci left: 1.615057e-01	ci right 1.762877e-01	k: 1688	n:10000
TSEN2   10000 perm   2 sec   (6056 perm/sec)   p_kst 1.688000e-01   p_cons 2.570000e-01   p_joint 3.637000e-01

Outputting figure to mutsig2_images.part000000000183/TSEN2.3_1481_10000_0.1688_0.257_0.3637.png
                gene_name: TSEN2
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 55 percent done.
TSPAN33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.998681e-02	ci left: 6.212544e-01	ci right 6.402693e-01	k: 6308	n:10000
Cons ci ratio: 4.948217e-02	ci left: 3.759451e-01	ci right 3.951216e-01	k: 3855	n:10000
KS ci ratio: 4.015418e-02	ci left: 4.780578e-01	ci right 4.977493e-01	k: 4879	n:10000
TSPAN33   10000 perm   1 sec   (6936 perm/sec)   p_kst 4.879000e-01   p_cons 3.855000e-01   p_joint 6.308000e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN33.3_884_10000_0.4879_0.3855_0.6308.png
                gene_name: TSPAN33
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 57 percent done.
TSPAN8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.419618e-02	ci left: 5.580221e-01	ci right 5.775384e-01	k: 5678	n:10000
Cons ci ratio: 1.116695e-01	ci left: 1.035416e-01	ci right 1.158868e-01	k: 1096	n:10000
KS ci ratio: 7.374718e-03	ci left: 9.621545e-01	ci right 9.693708e-01	k: 9659	n:10000
TSPAN8   10000 perm   2 sec   (6311 perm/sec)   p_kst 9.659000e-01   p_cons 1.096000e-01   p_joint 5.678000e-01

Joint ci ratio: 3.195298e-02	ci left: 4.224757e-01	ci right 4.362449e-01	k: 8587	n:20000
Cons ci ratio: 7.846254e-02	ci left: 1.065799e-01	ci right 1.153335e-01	k: 2218	n:20000
KS ci ratio: 5.079632e-03	ci left: 9.650003e-01	ci right 9.699625e-01	k: 19351	n:20000
TSPAN8   20000 perm   4 sec   (5562 perm/sec)   p_kst 9.675500e-01   p_cons 1.109000e-01   p_joint 4.293500e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN8.3_746_20000_0.96755_0.1109_0.42935.png
                gene_name: TSPAN8
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 59 percent done.
TSPYL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.239779e-02	ci left: 2.184255e-01	ci right 2.349340e-01	k: 2266	n:10000
Cons ci ratio: 5.131657e-02	ci left: 3.589352e-01	ci right 3.779415e-01	k: 3684	n:10000
KS ci ratio: 1.601820e-01	ci left: 5.195823e-02	ci right 6.110226e-02	k: 564	n:10000
TSPYL6   10000 perm   2 sec   (6267 perm/sec)   p_kst 5.640000e-02   p_cons 3.684000e-01   p_joint 2.266000e-01

Joint ci ratio: 6.596943e-02	ci left: 1.450775e-01	ci right 1.550245e-01	k: 3000	n:20000
Cons ci ratio: 3.786563e-02	ci left: 3.422421e-01	ci right 3.555019e-01	k: 6977	n:20000
KS ci ratio: 1.112983e-01	ci left: 5.514077e-02	ci right 6.168835e-02	k: 1167	n:20000
TSPYL6   20000 perm   4 sec   (5543 perm/sec)   p_kst 5.835000e-02   p_cons 3.488500e-01   p_joint 1.500000e-01

Joint ci ratio: 6.239548e-02	ci left: 1.126272e-01	ci right 1.199140e-01	k: 3487	n:30000
Cons ci ratio: 3.116368e-02	ci left: 3.398850e-01	ci right 3.506783e-01	k: 10358	n:30000
KS ci ratio: 9.233957e-02	ci left: 5.404414e-02	ci right 5.930879e-02	k: 1699	n:30000
TSPYL6   30000 perm   6 sec   (5267 perm/sec)   p_kst 5.663333e-02   p_cons 3.452667e-01   p_joint 1.162333e-01

Outputting figure to mutsig2_images.part000000000183/TSPYL6.3_1237_30000_0.056633_0.34527_0.11623.png
                gene_name: TSPYL6
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.057 
        ci_ks_bounds_left: 0.054 
       ci_ks_bounds_right: 0.059 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 60 percent done.
TSSK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.705195e-02	ci left: 1.976171e-01	ci right 2.135548e-01	k: 2055	n:10000
Cons ci ratio: 2.033296e-02	ci left: 7.798558e-01	ci right 7.959761e-01	k: 7880	n:10000
KS ci ratio: 9.788599e-02	ci left: 1.313941e-01	ci right 1.450174e-01	k: 1381	n:10000
TSSK4   10000 perm   2 sec   (6378 perm/sec)   p_kst 1.381000e-01   p_cons 7.880000e-01   p_joint 2.055000e-01

Outputting figure to mutsig2_images.part000000000183/TSSK4.3_1033_10000_0.1381_0.788_0.2055.png
                gene_name: TSSK4
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 62 percent done.
TSTD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.103856e-02	ci left: 6.049788e-01	ci right 6.241544e-01	k: 6146	n:10000
KS ci ratio: 3.686500e-02	ci left: 5.207608e-01	ci right 5.404213e-01	k: 5306	n:10000
TSTD2   10000 perm   2 sec   (5945 perm/sec)   p_kst 5.306000e-01   p_cons 6.146000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TSTD2.3_1587_10000_0.5306_0.6146_1.png
                gene_name: TSTD2
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
TSEN15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.632864e-02	ci left: 6.799240e-01	ci right 6.981658e-01	k: 6891	n:10000
Cons ci ratio: 2.070356e-02	ci left: 7.736747e-01	ci right 7.899608e-01	k: 7819	n:10000
KS ci ratio: 4.904642e-02	ci left: 3.801249e-01	ci right 3.993394e-01	k: 3897	n:10000
TSEN15   10000 perm   1 sec   (7128 perm/sec)   p_kst 3.897000e-01   p_cons 7.819000e-01   p_joint 6.891000e-01

Outputting figure to mutsig2_images.part000000000183/TSEN15.2_552_10000_0.3897_0.7819_0.6891.png
                gene_name: TSEN15
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 66 percent done.
TSGA10IP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.443225e-01	ci left: 6.372193e-02	ci right 7.373108e-02	k: 686	n:10000
Cons ci ratio: 1.753367e-01	ci left: 4.341336e-02	ci right 5.185268e-02	k: 475	n:10000
KS ci ratio: 5.621107e-02	ci left: 3.179062e-01	ci right 3.363946e-01	k: 3271	n:10000
TSGA10IP   10000 perm   2 sec   (6198 perm/sec)   p_kst 3.271000e-01   p_cons 4.750000e-02   p_joint 6.860000e-02

Joint ci ratio: 7.346958e-02	ci left: 1.200034e-01	ci right 1.292060e-01	k: 2491	n:20000
Cons ci ratio: 1.154500e-01	ci left: 5.134529e-02	ci right 5.768501e-02	k: 1089	n:20000
KS ci ratio: 4.022142e-02	ci left: 3.154760e-01	ci right 3.284758e-01	k: 6439	n:20000
TSGA10IP   20000 perm   4 sec   (5462 perm/sec)   p_kst 3.219500e-01   p_cons 5.445000e-02   p_joint 1.245500e-01

Joint ci ratio: 5.626409e-02	ci left: 1.353343e-01	ci right 1.432024e-01	k: 4177	n:30000
Cons ci ratio: 9.366089e-02	ci left: 5.257711e-02	ci right 5.777613e-02	k: 1654	n:30000
KS ci ratio: 3.296896e-02	ci left: 3.149879e-01	ci right 3.255803e-01	k: 9608	n:30000
TSGA10IP   30000 perm   6 sec   (5085 perm/sec)   p_kst 3.202667e-01   p_cons 5.513333e-02   p_joint 1.392333e-01

Outputting figure to mutsig2_images.part000000000183/TSGA10IP.2_1703_30000_0.32027_0.055133_0.13923.png
                gene_name: TSGA10IP
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.058 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 67 percent done.
TSGA13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.358455e-02	ci left: 4.373218e-01	ci right 4.569090e-01	k: 4471	n:10000
Cons ci ratio: 1.235153e-01	ci left: 8.582142e-02	ci right 9.721783e-02	k: 914	n:10000
KS ci ratio: 4.491338e-02	ci left: 4.225613e-01	ci right 4.420781e-01	k: 4323	n:10000
TSGA13   10000 perm   2 sec   (6573 perm/sec)   p_kst 4.323000e-01   p_cons 9.140000e-02   p_joint 4.471000e-01

Joint ci ratio: 5.646177e-02	ci left: 1.886879e-01	ci right 1.997012e-01	k: 3883	n:20000
Cons ci ratio: 8.560077e-02	ci left: 9.082330e-02	ci right 9.899491e-02	k: 1897	n:20000
KS ci ratio: 3.180671e-02	ci left: 4.247210e-01	ci right 4.384989e-01	k: 8632	n:20000
TSGA13   20000 perm   3 sec   (5840 perm/sec)   p_kst 4.316000e-01   p_cons 9.485000e-02   p_joint 1.941500e-01

Outputting figure to mutsig2_images.part000000000183/TSGA13.2_856_20000_0.4316_0.09485_0.19415.png
                gene_name: TSGA13
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 69 percent done.
TSLP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.435966e-02	ci left: 7.124997e-01	ci right 7.301712e-01	k: 7214	n:10000
KS ci ratio: 2.772690e-02	ci left: 6.571620e-01	ci right 6.757409e-01	k: 6665	n:10000
TSLP   10000 perm   1 sec   (6843 perm/sec)   p_kst 6.665000e-01   p_cons 7.214000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TSLP.2_496_10000_0.6665_0.7214_1.png
                gene_name: TSLP
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
TSNAX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.597292e-02	ci left: 6.857695e-01	ci right 7.039168e-01	k: 6949	n:10000
KS ci ratio: 1.427232e-02	ci left: 8.765385e-01	ci right 8.892375e-01	k: 8830	n:10000
TSNAX   10000 perm   1 sec   (6681 perm/sec)   p_kst 8.830000e-01   p_cons 6.949000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TSNAX.2_897_10000_0.883_0.6949_1.png
                gene_name: TSNAX
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
TSPAN11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.792416e-02	ci left: 8.195432e-01	ci right 8.344658e-01	k: 8271	n:10000
Cons ci ratio: 3.868797e-02	ci left: 4.966503e-01	ci right 5.163459e-01	k: 5065	n:10000
KS ci ratio: 3.598625e-02	ci left: 5.327746e-01	ci right 5.524006e-01	k: 5426	n:10000
TSPAN11   10000 perm   2 sec   (6607 perm/sec)   p_kst 5.426000e-01   p_cons 5.065000e-01   p_joint 8.271000e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN11.2_790_10000_0.5426_0.5065_0.8271.png
                gene_name: TSPAN11
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 74 percent done.
TSPAN17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.535299e-02	ci left: 5.415883e-01	ci right 5.611817e-01	k: 5514	n:10000
Cons ci ratio: 6.007874e-02	ci left: 2.895409e-01	ci right 3.075765e-01	k: 2985	n:10000
KS ci ratio: 1.419628e-02	ci left: 8.776639e-01	ci right 8.903114e-01	k: 8841	n:10000
TSPAN17   10000 perm   2 sec   (6462 perm/sec)   p_kst 8.841000e-01   p_cons 2.985000e-01   p_joint 5.514000e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN17.2_1035_10000_0.8841_0.2985_0.5514.png
                gene_name: TSPAN17
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 76 percent done.
TSPAN19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.040012e-02	ci left: 6.148232e-01	ci right 6.339043e-01	k: 6244	n:10000
Cons ci ratio: 5.178283e-02	ci left: 3.547592e-01	ci right 3.737199e-01	k: 3642	n:10000
KS ci ratio: 2.953784e-02	ci left: 6.282906e-01	ci right 6.472290e-01	k: 6378	n:10000
TSPAN19   10000 perm   2 sec   (6572 perm/sec)   p_kst 6.378000e-01   p_cons 3.642000e-01   p_joint 6.244000e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN19.2_779_10000_0.6378_0.3642_0.6244.png
                gene_name: TSPAN19
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 78 percent done.
TSPAN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.272211e-01	ci left: 2.560990e-02	ci right 3.226830e-02	k: 288	n:10000
Cons ci ratio: 3.960612e-01	ci left: 7.782754e-03	ci right 1.171078e-02	k: 96	n:10000
KS ci ratio: 6.473460e-02	ci left: 2.595354e-01	ci right 2.769998e-01	k: 2682	n:10000
TSPAN2   10000 perm   2 sec   (6076 perm/sec)   p_kst 2.682000e-01   p_cons 9.600000e-03   p_joint 2.880000e-02

Joint ci ratio: 1.806525e-01	ci left: 2.091926e-02	ci right 2.512099e-02	k: 459	n:20000
Cons ci ratio: 2.908546e-01	ci left: 7.691529e-03	ci right 1.035416e-02	k: 179	n:20000
KS ci ratio: 4.586218e-02	ci left: 2.613744e-01	ci right 2.736933e-01	k: 5350	n:20000
TSPAN2   20000 perm   4 sec   (5670 perm/sec)   p_kst 2.675000e-01   p_cons 8.950000e-03   p_joint 2.295000e-02

Joint ci ratio: 1.589639e-01	ci left: 1.828556e-02	ci right 2.147505e-02	k: 595	n:30000
Cons ci ratio: 2.331652e-01	ci left: 8.244884e-03	ci right 1.045170e-02	k: 279	n:30000
KS ci ratio: 3.737487e-02	ci left: 2.632591e-01	ci right 2.733192e-01	k: 8048	n:30000
TSPAN2   30000 perm   5 sec   (5497 perm/sec)   p_kst 2.682667e-01   p_cons 9.300000e-03   p_joint 1.983333e-02

Joint ci ratio: 1.255255e-01	ci left: 2.230417e-02	ci right 2.531551e-02	k: 951	n:40000
Cons ci ratio: 1.988155e-01	ci left: 8.667670e-03	ci right 1.060452e-02	k: 384	n:40000
KS ci ratio: 3.242750e-02	ci left: 2.632163e-01	ci right 2.719175e-01	k: 10702	n:40000
TSPAN2   40000 perm   7 sec   (5345 perm/sec)   p_kst 2.675500e-01   p_cons 9.600000e-03   p_joint 2.377500e-02

Joint ci ratio: 1.116981e-01	ci left: 2.269563e-02	ci right 2.540001e-02	k: 1201	n:50000
Cons ci ratio: 1.771309e-01	ci left: 8.840360e-03	ci right 1.057728e-02	k: 484	n:50000
KS ci ratio: 2.895493e-02	ci left: 2.643403e-01	ci right 2.721267e-01	k: 13411	n:50000
TSPAN2   50000 perm   10 sec   (5217 perm/sec)   p_kst 2.682200e-01   p_cons 9.680000e-03   p_joint 2.402000e-02

Joint ci ratio: 1.015485e-01	ci left: 2.300138e-02	ci right 2.547826e-02	k: 1453	n:60000
Cons ci ratio: 1.607247e-01	ci left: 9.027228e-03	ci right 1.062072e-02	k: 588	n:60000
KS ci ratio: 2.640679e-02	ci left: 2.650564e-01	ci right 2.721660e-01	k: 16116	n:60000
TSPAN2   60000 perm   12 sec   (5053 perm/sec)   p_kst 2.686000e-01   p_cons 9.800000e-03   p_joint 2.421667e-02

Joint ci ratio: 8.329188e-02	ci left: 2.939245e-02	ci right 3.196094e-02	k: 2146	n:70000
Cons ci ratio: 1.483849e-01	ci left: 9.138520e-03	ci right 1.061682e-02	k: 690	n:70000
KS ci ratio: 2.446499e-02	ci left: 2.650487e-01	ci right 2.716277e-01	k: 18783	n:70000
TSPAN2   70000 perm   14 sec   (4944 perm/sec)   p_kst 2.683286e-01   p_cons 9.857143e-03   p_joint 3.065714e-02

Joint ci ratio: 7.805559e-02	ci left: 2.936826e-02	ci right 3.176594e-02	k: 2444	n:80000
Cons ci ratio: 1.390430e-01	ci left: 9.153092e-03	ci right 1.053280e-02	k: 786	n:80000
KS ci ratio: 2.294218e-02	ci left: 2.642854e-01	ci right 2.704315e-01	k: 21388	n:80000
TSPAN2   80000 perm   17 sec   (4848 perm/sec)   p_kst 2.673500e-01   p_cons 9.825000e-03   p_joint 3.055000e-02

Joint ci ratio: 8.511993e-02	ci left: 2.204137e-02	ci right 2.401176e-02	k: 2071	n:90000
Cons ci ratio: 1.317977e-01	ci left: 9.091463e-03	ci right 1.038488e-02	k: 875	n:90000
KS ci ratio: 2.160781e-02	ci left: 2.648647e-01	ci right 2.706614e-01	k: 24098	n:90000
TSPAN2   90000 perm   19 sec   (4758 perm/sec)   p_kst 2.677556e-01   p_cons 9.722222e-03   p_joint 2.301111e-02

Joint ci ratio: 7.423121e-02	ci left: 2.612198e-02	ci right 2.814557e-02	k: 2712	n:100000
Cons ci ratio: 1.249911e-01	ci left: 9.130864e-03	ci right 1.035782e-02	k: 973	n:100000
KS ci ratio: 2.048103e-02	ci left: 2.653563e-01	ci right 2.708572e-01	k: 26810	n:100000
TSPAN2   100000 perm   21 sec   (4673 perm/sec)   p_kst 2.681000e-01   p_cons 9.730000e-03   p_joint 2.712000e-02

Joint ci ratio: 7.056191e-02	ci left: 2.632707e-02	ci right 2.826160e-02	k: 3001	n:110000
Cons ci ratio: 1.188054e-01	ci left: 9.217445e-03	ci right 1.039044e-02	k: 1077	n:110000
KS ci ratio: 1.955785e-02	ci left: 2.648857e-01	ci right 2.701265e-01	k: 29425	n:110000
TSPAN2   110000 perm   24 sec   (4590 perm/sec)   p_kst 2.675000e-01   p_cons 9.790909e-03   p_joint 2.728182e-02

Joint ci ratio: 6.782355e-02	ci left: 2.616398e-02	ci right 2.800897e-02	k: 3249	n:120000
Cons ci ratio: 1.143878e-01	ci left: 9.136980e-03	ci right 1.025357e-02	k: 1162	n:120000
KS ci ratio: 1.872804e-02	ci left: 2.649388e-01	ci right 2.699558e-01	k: 32093	n:120000
TSPAN2   120000 perm   27 sec   (4510 perm/sec)   p_kst 2.674417e-01   p_cons 9.683333e-03   p_joint 2.707500e-02

Joint ci ratio: 6.489645e-02	ci left: 2.641332e-02	ci right 2.819247e-02	k: 3548	n:130000
Cons ci ratio: 1.097647e-01	ci left: 9.181818e-03	ci right 1.025561e-02	k: 1262	n:130000
KS ci ratio: 1.801790e-02	ci left: 2.645045e-01	ci right 2.693213e-01	k: 34698	n:130000
TSPAN2   130000 perm   29 sec   (4433 perm/sec)   p_kst 2.669077e-01   p_cons 9.707692e-03   p_joint 2.729231e-02

Joint ci ratio: 6.262007e-02	ci left: 2.637525e-02	ci right 2.808726e-02	k: 3811	n:140000
Cons ci ratio: 1.064119e-01	ci left: 9.088881e-03	ci right 1.011730e-02	k: 1343	n:140000
KS ci ratio: 1.734417e-02	ci left: 2.650045e-01	ci right 2.696480e-01	k: 37425	n:140000
TSPAN2   140000 perm   32 sec   (4360 perm/sec)   p_kst 2.673214e-01   p_cons 9.592857e-03   p_joint 2.722143e-02

Joint ci ratio: 6.062877e-02	ci left: 2.629067e-02	ci right 2.794101e-02	k: 4066	n:150000
Cons ci ratio: 1.033120e-01	ci left: 9.015267e-03	ci right 1.000383e-02	k: 1425	n:150000
KS ci ratio: 1.678013e-02	ci left: 2.645231e-01	ci right 2.690060e-01	k: 40014	n:150000
TSPAN2   150000 perm   35 sec   (4287 perm/sec)   p_kst 2.667600e-01   p_cons 9.500000e-03   p_joint 2.710667e-02

Joint ci ratio: 6.746826e-02	ci left: 1.996490e-02	ci right 2.136504e-02	k: 3305	n:160000
Cons ci ratio: 1.005353e-01	ci left: 8.939050e-03	ci right 9.891354e-03	k: 1505	n:160000
KS ci ratio: 1.623579e-02	ci left: 2.648708e-01	ci right 2.692126e-01	k: 42726	n:160000
TSPAN2   160000 perm   38 sec   (4217 perm/sec)   p_kst 2.670375e-01   p_cons 9.406250e-03   p_joint 2.065625e-02

Joint ci ratio: 5.706078e-02	ci left: 2.624045e-02	ci right 2.778750e-02	k: 4591	n:170000
Cons ci ratio: 9.762989e-02	ci left: 8.935252e-03	ci right 9.858066e-03	k: 1596	n:170000
KS ci ratio: 1.575516e-02	ci left: 2.648335e-01	ci right 2.690450e-01	k: 45379	n:170000
TSPAN2   170000 perm   41 sec   (4151 perm/sec)   p_kst 2.669353e-01   p_cons 9.388235e-03   p_joint 2.700588e-02

Outputting figure to mutsig2_images.part000000000183/TSPAN2.2_698_170000_0.26694_0.0093882_0.027006.png
                gene_name: TSPAN2
               theta_stop: 0.098 
                    nperm: 170000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.0094 
      ci_cons_bounds_left: 0.0089 
     ci_cons_bounds_right: 0.0099 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 79 percent done.
TSPAN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.619733e-02	ci left: 8.471301e-01	ci right 8.610629e-01	k: 8542	n:10000
Cons ci ratio: 5.932257e-03	ci left: 9.746130e-01	ci right 9.805043e-01	k: 9777	n:10000
KS ci ratio: 3.484151e-02	ci left: 5.488018e-01	ci right 5.683640e-01	k: 5586	n:10000
TSPAN3   10000 perm   1 sec   (6773 perm/sec)   p_kst 5.586000e-01   p_cons 9.777000e-01   p_joint 8.542000e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN3.2_790_10000_0.5586_0.9777_0.8542.png
                gene_name: TSPAN3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 81 percent done.
TSPAN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.378007e-02	ci left: 5.640372e-01	ci right 5.835198e-01	k: 5738	n:10000
KS ci ratio: 9.252758e-03	ci left: 9.427388e-01	ci right 9.515984e-01	k: 9473	n:10000
TSPAN6   10000 perm   1 sec   (6673 perm/sec)   p_kst 9.473000e-01   p_cons 5.738000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TSPAN6.2_766_10000_0.9473_0.5738_1.png
                gene_name: TSPAN6
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
TSPAN9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.107307e-03	ci left: 9.807002e-01	ci right 9.858126e-01	k: 9834	n:10000
Cons ci ratio: 3.753630e-02	ci left: 5.117542e-01	ci right 5.314332e-01	k: 5216	n:10000
KS ci ratio: 2.421431e-02	ci left: 7.149223e-01	ci right 7.325471e-01	k: 7238	n:10000
TSPAN9   10000 perm   2 sec   (6644 perm/sec)   p_kst 7.238000e-01   p_cons 5.216000e-01   p_joint 9.834000e-01

Outputting figure to mutsig2_images.part000000000183/TSPAN9.2_748_10000_0.7238_0.5216_0.9834.png
                gene_name: TSPAN9
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 84 percent done.
TSPYL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.454932e-02	ci left: 4.265498e-01	ci right 4.460873e-01	k: 4363	n:10000
Cons ci ratio: 5.202967e-02	ci left: 3.525721e-01	ci right 3.715083e-01	k: 3620	n:10000
KS ci ratio: 6.372771e-02	ci left: 2.656711e-01	ci right 2.832604e-01	k: 2744	n:10000
TSPYL1   10000 perm   2 sec   (6381 perm/sec)   p_kst 2.744000e-01   p_cons 3.620000e-01   p_joint 4.363000e-01

Outputting figure to mutsig2_images.part000000000183/TSPYL1.2_1318_10000_0.2744_0.362_0.4363.png
                gene_name: TSPYL1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 86 percent done.
TSPYL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.334384e-02	ci left: 7.294651e-01	ci right 7.467959e-01	k: 7382	n:10000
Cons ci ratio: 1.683568e-02	ci left: 8.370436e-01	ci right 8.513552e-01	k: 8443	n:10000
KS ci ratio: 4.321626e-02	ci left: 4.415122e-01	ci right 4.611162e-01	k: 4513	n:10000
TSPYL2   10000 perm   2 sec   (6264 perm/sec)   p_kst 4.513000e-01   p_cons 8.443000e-01   p_joint 7.382000e-01

Outputting figure to mutsig2_images.part000000000183/TSPYL2.2_2110_10000_0.4513_0.8443_0.7382.png
                gene_name: TSPYL2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 88 percent done.
TSSC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.692583e-03	ci left: 9.591130e-01	ci right 9.666143e-01	k: 9630	n:10000
Cons ci ratio: 4.696672e-02	ci left: 4.008357e-01	ci right 4.202165e-01	k: 4105	n:10000
KS ci ratio: 4.647540e-02	ci left: 4.059166e-01	ci right 4.253326e-01	k: 4156	n:10000
TSSC1   10000 perm   2 sec   (6634 perm/sec)   p_kst 4.156000e-01   p_cons 4.105000e-01   p_joint 9.630000e-01

Outputting figure to mutsig2_images.part000000000183/TSSC1.2_1200_10000_0.4156_0.4105_0.963.png
                gene_name: TSSC1
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 90 percent done.
TSSK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.011813e-01	ci left: 1.238583e-01	ci right 1.371578e-01	k: 1304	n:10000
Cons ci ratio: 3.466525e-02	ci left: 5.513070e-01	ci right 5.708574e-01	k: 5611	n:10000
KS ci ratio: 1.851468e-01	ci left: 3.891660e-02	ci right 4.695241e-02	k: 428	n:10000
TSSK2   10000 perm   2 sec   (6524 perm/sec)   p_kst 4.280000e-02   p_cons 5.611000e-01   p_joint 1.304000e-01

Joint ci ratio: 7.184833e-02	ci left: 1.248759e-01	ci right 1.342321e-01	k: 2590	n:20000
Cons ci ratio: 2.435718e-02	ci left: 5.573440e-01	ci right 5.711373e-01	k: 11285	n:20000
KS ci ratio: 1.310813e-01	ci left: 3.998807e-02	ci right 4.564582e-02	k: 855	n:20000
TSSK2   20000 perm   4 sec   (5575 perm/sec)   p_kst 4.275000e-02   p_cons 5.642500e-01   p_joint 1.295000e-01

Joint ci ratio: 4.838697e-02	ci left: 1.751388e-01	ci right 1.838567e-01	k: 5384	n:30000
Cons ci ratio: 1.978370e-02	ci left: 5.612033e-01	ci right 5.724505e-01	k: 17005	n:30000
KS ci ratio: 1.066815e-01	ci left: 4.076467e-02	ci right 4.539102e-02	k: 1291	n:30000
TSSK2   30000 perm   6 sec   (5341 perm/sec)   p_kst 4.303333e-02   p_cons 5.668333e-01   p_joint 1.794667e-01

Joint ci ratio: 3.266495e-02	ci left: 2.603813e-01	ci right 2.690529e-01	k: 10588	n:40000
Cons ci ratio: 1.718080e-02	ci left: 5.606002e-01	ci right 5.703403e-01	k: 22619	n:40000
KS ci ratio: 9.196235e-02	ci left: 4.144839e-02	ci right 4.546823e-02	k: 1737	n:40000
TSSK2   40000 perm   8 sec   (4930 perm/sec)   p_kst 4.342500e-02   p_cons 5.654750e-01   p_joint 2.647000e-01

Outputting figure to mutsig2_images.part000000000183/TSSK2.2_1081_40000_0.043425_0.56547_0.2647.png
                gene_name: TSSK2
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.041 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 91 percent done.
TTC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.733977e-01	ci left: 8.867630e-03	ci right 1.302464e-02	k: 108	n:10000
Cons ci ratio: 7.213041e-02	ci left: 2.197085e-01	ci right 2.362502e-01	k: 2279	n:10000
KS ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
TTC1   10000 perm   2 sec   (5852 perm/sec)   p_kst 1.090000e-02   p_cons 2.279000e-01   p_joint 1.080000e-02

Joint ci ratio: 2.830257e-01	ci left: 8.155818e-03	ci right 1.088963e-02	k: 189	n:20000
Cons ci ratio: 5.204020e-02	ci left: 2.152159e-01	ci right 2.267653e-01	k: 4419	n:20000
KS ci ratio: 2.690752e-01	ci left: 9.087199e-03	ci right 1.195778e-02	k: 209	n:20000
TTC1   20000 perm   4 sec   (5501 perm/sec)   p_kst 1.045000e-02   p_cons 2.209500e-01   p_joint 9.450000e-03

Joint ci ratio: 2.702015e-01	ci left: 6.025704e-03	ci right 7.938315e-03	k: 208	n:30000
Cons ci ratio: 4.244560e-02	ci left: 2.166461e-01	ci right 2.260746e-01	k: 6640	n:30000
KS ci ratio: 2.197008e-01	ci left: 9.345984e-03	ci right 1.168360e-02	k: 314	n:30000
TTC1   30000 perm   6 sec   (5332 perm/sec)   p_kst 1.046667e-02   p_cons 2.213333e-01   p_joint 6.933333e-03

Joint ci ratio: 2.409186e-01	ci left: 5.782973e-03	ci right 7.389919e-03	k: 262	n:40000
Cons ci ratio: 3.676881e-02	ci left: 2.171901e-01	ci right 2.253504e-01	k: 8850	n:40000
KS ci ratio: 1.940375e-01	ci left: 9.119511e-03	ci right 1.110258e-02	k: 403	n:40000
TTC1   40000 perm   8 sec   (5203 perm/sec)   p_kst 1.007500e-02   p_cons 2.212500e-01   p_joint 6.550000e-03

Joint ci ratio: 1.871284e-01	ci left: 7.885551e-03	ci right 9.532250e-03	k: 434	n:50000
Cons ci ratio: 3.300729e-02	ci left: 2.163754e-01	ci right 2.236572e-01	k: 11000	n:50000
KS ci ratio: 1.732067e-01	ci left: 9.261239e-03	ci right 1.103633e-02	k: 506	n:50000
TTC1   50000 perm   10 sec   (5090 perm/sec)   p_kst 1.012000e-02   p_cons 2.200000e-01   p_joint 8.680000e-03

Joint ci ratio: 1.696804e-01	ci left: 8.068202e-03	ci right 9.579883e-03	k: 528	n:60000
Cons ci ratio: 3.011708e-02	ci left: 2.168564e-01	ci right 2.235040e-01	k: 13210	n:60000
KS ci ratio: 1.572562e-01	ci left: 9.443477e-03	ci right 1.107108e-02	k: 614	n:60000
TTC1   60000 perm   12 sec   (4983 perm/sec)   p_kst 1.023333e-02   p_cons 2.201667e-01   p_joint 8.800000e-03

Joint ci ratio: 1.598833e-01	ci left: 7.833220e-03	ci right 9.207987e-03	k: 595	n:70000
Cons ci ratio: 2.788282e-02	ci left: 2.171064e-01	ci right 2.232597e-01	k: 15412	n:70000
KS ci ratio: 1.468894e-01	ci left: 9.331199e-03	ci right 1.082412e-02	k: 704	n:70000
TTC1   70000 perm   14 sec   (4882 perm/sec)   p_kst 1.005714e-02   p_cons 2.201714e-01   p_joint 8.500000e-03

Joint ci ratio: 1.496840e-01	ci left: 7.863439e-03	ci right 9.147586e-03	k: 679	n:80000
Cons ci ratio: 2.608566e-02	ci left: 2.172578e-01	ci right 2.230125e-01	k: 17610	n:80000
KS ci ratio: 1.370349e-01	ci left: 9.430754e-03	ci right 1.083011e-02	k: 809	n:80000
TTC1   80000 perm   17 sec   (4787 perm/sec)   p_kst 1.011250e-02   p_cons 2.201250e-01   p_joint 8.487500e-03

Joint ci ratio: 1.404767e-01	ci left: 7.974898e-03	ci right 9.190428e-03	k: 771	n:90000
Cons ci ratio: 2.460924e-02	ci left: 2.172086e-01	ci right 2.226316e-01	k: 19792	n:90000
KS ci ratio: 1.287879e-01	ci left: 9.532306e-03	ci right 1.085511e-02	k: 916	n:90000
TTC1   90000 perm   19 sec   (4698 perm/sec)   p_kst 1.017778e-02   p_cons 2.199111e-01   p_joint 8.566667e-03

Joint ci ratio: 1.330942e-01	ci left: 8.027321e-03	ci right 9.181453e-03	k: 859	n:100000
Cons ci ratio: 2.331324e-02	ci left: 2.178340e-01	ci right 2.229822e-01	k: 22040	n:100000
KS ci ratio: 1.224153e-01	ci left: 9.528294e-03	ci right 1.078036e-02	k: 1014	n:100000
TTC1   100000 perm   22 sec   (4612 perm/sec)   p_kst 1.014000e-02   p_cons 2.204000e-01   p_joint 8.590000e-03

Joint ci ratio: 1.264294e-01	ci left: 8.115608e-03	ci right 9.219622e-03	k: 952	n:110000
Cons ci ratio: 2.226606e-02	ci left: 2.173738e-01	ci right 2.222774e-01	k: 24180	n:110000
KS ci ratio: 1.162200e-01	ci left: 9.641103e-03	ci right 1.083948e-02	k: 1125	n:110000
TTC1   110000 perm   24 sec   (4525 perm/sec)   p_kst 1.022727e-02   p_cons 2.198182e-01   p_joint 8.654545e-03

Joint ci ratio: 1.210257e-01	ci left: 8.141880e-03	ci right 9.198737e-03	k: 1039	n:120000
Cons ci ratio: 2.134161e-02	ci left: 2.171027e-01	ci right 2.217942e-01	k: 26333	n:120000
KS ci ratio: 1.109243e-01	ci left: 9.728335e-03	ci right 1.087885e-02	k: 1235	n:120000
TTC1   120000 perm   28 sec   (4344 perm/sec)   p_kst 1.029167e-02   p_cons 2.194417e-01   p_joint 8.658333e-03

Joint ci ratio: 1.163646e-01	ci left: 8.150020e-03	ci right 9.164387e-03	k: 1124	n:130000
Cons ci ratio: 2.052026e-02	ci left: 2.169306e-01	ci right 2.214358e-01	k: 28493	n:130000
KS ci ratio: 1.069364e-01	ci left: 9.683368e-03	ci right 1.078480e-02	k: 1329	n:130000
TTC1   130000 perm   30 sec   (4281 perm/sec)   p_kst 1.022308e-02   p_cons 2.191769e-01   p_joint 8.646154e-03

Joint ci ratio: 1.123442e-01	ci left: 8.136835e-03	ci right 9.112252e-03	k: 1206	n:140000
Cons ci ratio: 1.977210e-02	ci left: 2.170423e-01	ci right 2.213836e-01	k: 30689	n:140000
KS ci ratio: 1.033498e-01	ci left: 9.645461e-03	ci right 1.070355e-02	k: 1423	n:140000
TTC1   140000 perm   33 sec   (4217 perm/sec)   p_kst 1.016429e-02   p_cons 2.192071e-01   p_joint 8.614286e-03

Joint ci ratio: 1.087988e-01	ci left: 8.112958e-03	ci right 9.052852e-03	k: 1286	n:150000
Cons ci ratio: 1.911289e-02	ci left: 2.169158e-01	ci right 2.211084e-01	k: 32851	n:150000
KS ci ratio: 1.001347e-01	ci left: 9.606645e-03	ci right 1.062576e-02	k: 1516	n:150000
TTC1   150000 perm   36 sec   (4156 perm/sec)   p_kst 1.010667e-02   p_cons 2.190067e-01   p_joint 8.573333e-03

Joint ci ratio: 1.055692e-01	ci left: 8.092490e-03	ci right 9.000453e-03	k: 1366	n:160000
Cons ci ratio: 1.850907e-02	ci left: 2.169257e-01	ci right 2.209845e-01	k: 35032	n:160000
KS ci ratio: 9.665776e-02	ci left: 9.682927e-03	ci right 1.067244e-02	k: 1627	n:160000
TTC1   160000 perm   39 sec   (4096 perm/sec)   p_kst 1.016875e-02   p_cons 2.189500e-01   p_joint 8.537500e-03

Joint ci ratio: 1.018682e-01	ci left: 8.195191e-03	ci right 9.080512e-03	k: 1467	n:170000
Cons ci ratio: 1.795599e-02	ci left: 2.169949e-01	ci right 2.209324e-01	k: 37223	n:170000
KS ci ratio: 9.351953e-02	ci left: 9.750773e-03	ci right 1.071310e-02	k: 1738	n:170000
TTC1   170000 perm   42 sec   (4036 perm/sec)   p_kst 1.022353e-02   p_cons 2.189588e-01   p_joint 8.629412e-03

Joint ci ratio: 9.897730e-02	ci left: 8.211100e-03	ci right 9.071504e-03	k: 1554	n:180000
Cons ci ratio: 1.745339e-02	ci left: 2.169860e-01	ci right 2.208120e-01	k: 39401	n:180000
KS ci ratio: 9.124316e-02	ci left: 9.686643e-03	ci right 1.061812e-02	k: 1826	n:180000
TTC1   180000 perm   45 sec   (3978 perm/sec)   p_kst 1.014444e-02   p_cons 2.188944e-01   p_joint 8.633333e-03

Outputting figure to mutsig2_images.part000000000183/TTC1.2_907_180000_0.010144_0.21889_0.0086333.png
                gene_name: TTC1
               theta_stop: 0.099 
                    nperm: 180000 
                     p_ks: 0.010 
        ci_ks_bounds_left: 0.0097 
       ci_ks_bounds_right: 0.011 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.0086 
     ci_joint_bounds_left: 0.0082 
    ci_joint_bounds_right: 0.0091 

Current progress: 93 percent done.
TTC12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.146199e-02	ci left: 9.158488e-01	ci right 9.265043e-01	k: 9213	n:10000
KS ci ratio: 1.687406e-02	ci left: 8.364327e-01	ci right 8.507666e-01	k: 8437	n:10000
TTC12   10000 perm   2 sec   (6252 perm/sec)   p_kst 8.437000e-01   p_cons 9.213000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000183/TTC12.2_2202_10000_0.8437_0.9213_1.png
                gene_name: TTC12
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
TTC23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.361983e-02	ci left: 4.369227e-01	ci right 4.565083e-01	k: 4467	n:10000
Cons ci ratio: 1.005619e-01	ci left: 1.252279e-01	ci right 1.385873e-01	k: 1318	n:10000
KS ci ratio: 3.574050e-02	ci left: 5.361795e-01	ci right 5.557937e-01	k: 5460	n:10000
TTC23   10000 perm   2 sec   (6328 perm/sec)   p_kst 5.460000e-01   p_cons 1.318000e-01   p_joint 4.467000e-01

Joint ci ratio: 4.414716e-02	ci left: 2.764661e-01	ci right 2.889972e-01	k: 5654	n:20000
Cons ci ratio: 7.128052e-02	ci left: 1.266482e-01	ci right 1.360592e-01	k: 2626	n:20000
KS ci ratio: 2.547602e-02	ci left: 5.351143e-01	ci right 5.489734e-01	k: 10841	n:20000
TTC23   20000 perm   4 sec   (5509 perm/sec)   p_kst 5.420500e-01   p_cons 1.313000e-01   p_joint 2.827000e-01

Outputting figure to mutsig2_images.part000000000183/TTC23.2_1384_20000_0.54205_0.1313_0.2827.png
                gene_name: TTC23
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 97 percent done.
TTC24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.346779e-02	ci left: 3.401496e-01	ci right 3.589381e-01	k: 3495	n:10000
Cons ci ratio: 1.066050e-01	ci left: 1.127155e-01	ci right 1.255073e-01	k: 1190	n:10000
KS ci ratio: 6.026393e-03	ci left: 9.738693e-01	ci right 9.798485e-01	k: 9770	n:10000
TTC24   10000 perm   2 sec   (6180 perm/sec)   p_kst 9.770000e-01   p_cons 1.190000e-01   p_joint 3.495000e-01

Joint ci ratio: 3.945568e-02	ci left: 3.238813e-01	ci right 3.369680e-01	k: 6608	n:20000
Cons ci ratio: 7.603624e-02	ci left: 1.128222e-01	ci right 1.217894e-01	k: 2345	n:20000
KS ci ratio: 4.364591e-03	ci left: 9.736270e-01	ci right 9.779332e-01	k: 19517	n:20000
TTC24   20000 perm   4 sec   (5467 perm/sec)   p_kst 9.758500e-01   p_cons 1.172500e-01   p_joint 3.304000e-01

Outputting figure to mutsig2_images.part000000000183/TTC24.2_1789_20000_0.97585_0.11725_0.3304.png
                gene_name: TTC24
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 98 percent done.
TTC26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.644065e-03	ci left: 9.382754e-01	ci right 9.474645e-01	k: 9430	n:10000
Cons ci ratio: 5.490924e-02	ci left: 3.282306e-01	ci right 3.468641e-01	k: 3375	n:10000
KS ci ratio: 2.933363e-02	ci left: 6.315079e-01	ci right 6.504099e-01	k: 6410	n:10000
TTC26   10000 perm   2 sec   (6167 perm/sec)   p_kst 6.410000e-01   p_cons 3.375000e-01   p_joint 9.430000e-01

Outputting figure to mutsig2_images.part000000000183/TTC26.2_1737_10000_0.641_0.3375_0.943.png
                gene_name: TTC26
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000183
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 183 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1714>
Subject: Job 9894194: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1714>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000184> was used as the working directory.
Started at Sat Oct  6 00:33:49 2012
Results reported at Sat Oct  6 00:49:21 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000184.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000184.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 184  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000184.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    975.46 sec.
    Max Memory :      3556 MB
    Max Swap   :      6110 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
184
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 184
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 184: processing genes 16498 - 16588
Calculating significance of each gene.
Using projection method.
16498	TTC3	8.275773e-01
16499	TTC30A	9.229773e-02
16500	TTC30B	4.945517e-01
16501	TTC31	2.326102e-01
16502	TTC32	2.911155e-01
In gene TTC33 the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 805     n = 1	mu =   7.59e-07
16503	TTC33	3.901660e-01
16504	TTC35	4.095230e-02
16505	TTC36	1
16506	TTC37	4.906151e-02
16507	TTC38	8.803393e-01
16508	TTC39A	8.498623e-01
16509	TTC39B	5.527268e-01
16510	TTC39C	3.203696e-01
16511	TTC4	1
16512	TTC5	1.913748e-01
16513	TTC7A	7.914595e-01
16514	TTC7B	9.566170e-01
16515	TTC8	6.637864e-01
16516	TTC9	1
16517	TTC9B	4.824164e-01
16518	TTC9C	1
16519	TTF1	9.407414e-01
16520	TTF2	9.920246e-01
16521	TTK	8.606342e-02
16522	TTL	1.334794e-01
16523	TTLL1	7.434949e-01
16524	TTLL10	1
16525	TTLL11	4.922718e-01
16526	TTLL12	1
16527	TTLL13	8.325340e-01
16528	TTLL2	2.338978e-02
16529	TTLL3	6.620998e-01
16530	TTLL4	7.983861e-01
16531	TTLL5	9.840850e-01
16532	TTLL6	4.872248e-01
16533	TTLL7	1.596405e-02
16534	TTLL8	1
16535	TTLL9	6.662353e-02
In gene TTN the following bins exceed PROBCAP:
    READ-AG-A002	categ 2	N = 3208    n = 14	mu =   1.44e-03
16536	TTN	3.515560e-06
16537	TTPA	4.067104e-02
16538	TTPAL	1.165232e-01
16539	TTR	2.406554e-02
16540	TTYH1	3.463258e-01
16541	TTYH2	1.196233e-01
16542	TTYH3	7.422149e-01
16543	TUB	1.792121e-01
16544	TUBA1A	1
16545	TUBA1B	5.446311e-01
16546	TUBA1C	5.659715e-01
16547	TUBA3C	6.993122e-03
16548	TUBA3D	5.915346e-01
16549	TUBA3E	2.412558e-01
16550	TUBA4A	4.791106e-01
16551	TUBA8	4.242121e-01
16552	TUBAL3	2.565944e-01
16553	TUBB	8.386051e-01
16554	TUBB1	6.551544e-01
16555	TUBB2A	3.673094e-01
16556	TUBB2B	4.982057e-01
16557	TUBB2C	1
16558	TUBB3	5.985589e-01
16559	TUBB4	6.231222e-01
16560	TUBB4Q	4.530175e-01
16561	TUBB6	5.831577e-01
16562	TUBB8	4.692854e-01
16563	TUBD1	2.021271e-01
16564	TUBE1	1.594645e-01
16565	TUBG1	9.262253e-01
16566	TUBG2	2.222802e-01
16567	TUBGCP2	7.795812e-01
16568	TUBGCP3	4.577727e-01
16569	TUBGCP4	4.811830e-01
16570	TUBGCP5	5.870637e-01
16571	TUBGCP6	9.999977e-01
16572	TUFM	7.580756e-01
16573	TUFT1	1.856559e-01
16574	TULP1	1
16575	TULP2	1.409751e-01
16576	TULP3	1.092650e-01
16577	TULP4	2.198203e-01
16578	TUSC2	1
16579	TUSC3	7.364142e-04
16580	TUSC5	4.278463e-01
16581	TUT1	7.387697e-01
16582	TWF1	9.984669e-02
16583	TWF2	8.146681e-01
16584	TWIST1	1
16585	TWISTNB	6.313159e-01
16586	TWSG1	2.037029e-01
16587	TXK	1.033465e-01
16588	TXLNA	3.814894e-01
Done

Running MutSig 2:
Scatter job 184: processing genes 16498 - 16588
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TTN
Processing conservation and coverage...
8% 17% 26% 35% 44% 53% 62% 71% 80% 89% 98% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.571888e-02	ci left: 5.364800e-01	ci right 5.560930e-01	k: 5463	n:10000
Cons ci ratio: 1.494741e-02	ci left: 8.664173e-01	ci right 8.795646e-01	k: 8731	n:10000
KS ci ratio: 3.808135e-02	ci left: 5.045512e-01	ci right 5.242404e-01	k: 5144	n:10000
TTN   10000 perm   34 sec   (296 perm/sec)   p_kst 5.144000e-01   p_cons 8.731000e-01   p_joint 5.463000e-01

Outputting figure to mutsig2_images.part000000000184/TTN.290_111718_10000_0.5144_0.8731_0.5463.png
                gene_name: TTN
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 1 percent done.
TTC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
Cons ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
KS ci ratio: 3.492635e-02	ci left: 5.475994e-01	ci right 5.671671e-01	k: 5574	n:10000
TTC3   10000 perm   3 sec   (3788 perm/sec)   p_kst 5.574000e-01   p_cons 1.070000e-02   p_joint 7.170000e-02

Joint ci ratio: 1.087501e-01	ci left: 5.767339e-02	ci right 6.435494e-02	k: 1219	n:20000
Cons ci ratio: 2.737235e-01	ci left: 8.760815e-03	ci right 1.158433e-02	k: 202	n:20000
KS ci ratio: 2.473579e-02	ci left: 5.497323e-01	ci right 5.635512e-01	k: 11133	n:20000
TTC3   20000 perm   6 sec   (3484 perm/sec)   p_kst 5.566500e-01   p_cons 1.010000e-02   p_joint 6.095000e-02

Joint ci ratio: 1.345851e-01	ci left: 2.564642e-02	ci right 2.937917e-02	k: 824	n:30000
Cons ci ratio: 2.411146e-01	ci left: 7.680255e-03	ci right 9.816515e-03	k: 261	n:30000
KS ci ratio: 2.075062e-02	ci left: 5.376093e-01	ci right 5.489156e-01	k: 16298	n:30000
TTC3   30000 perm   9 sec   (3366 perm/sec)   p_kst 5.432667e-01   p_cons 8.700000e-03   p_joint 2.746667e-02

Joint ci ratio: 1.173801e-01	ci left: 2.553066e-02	ci right 2.873849e-02	k: 1084	n:40000
Cons ci ratio: 2.095193e-01	ci left: 7.765825e-03	ci right 9.606568e-03	k: 346	n:40000
KS ci ratio: 1.803483e-02	ci left: 5.366016e-01	ci right 5.463923e-01	k: 21660	n:40000
TTC3   40000 perm   12 sec   (3294 perm/sec)   p_kst 5.415000e-01   p_cons 8.650000e-03   p_joint 2.710000e-02

Joint ci ratio: 8.681322e-02	ci left: 3.747656e-02	ci right 4.089720e-02	k: 1958	n:50000
Cons ci ratio: 1.769468e-01	ci left: 8.859481e-03	ci right 1.059815e-02	k: 485	n:50000
KS ci ratio: 1.606609e-02	ci left: 5.391216e-01	ci right 5.478734e-01	k: 27175	n:50000
TTC3   50000 perm   15 sec   (3236 perm/sec)   p_kst 5.435000e-01   p_cons 9.700000e-03   p_joint 3.916000e-02

Joint ci ratio: 8.525815e-02	ci left: 3.258046e-02	ci right 3.549817e-02	k: 2041	n:60000
Cons ci ratio: 1.641360e-01	ci left: 8.643348e-03	ci right 1.020466e-02	k: 564	n:60000
KS ci ratio: 1.471072e-02	ci left: 5.380031e-01	ci right 5.459928e-01	k: 32520	n:60000
TTC3   60000 perm   19 sec   (3186 perm/sec)   p_kst 5.420000e-01   p_cons 9.400000e-03   p_joint 3.401667e-02

Joint ci ratio: 6.054538e-02	ci left: 5.478680e-02	ci right 5.822151e-02	k: 3954	n:70000
Cons ci ratio: 1.466794e-01	ci left: 9.358730e-03	ci right 1.085373e-02	k: 706	n:70000
KS ci ratio: 1.360229e-02	ci left: 5.389292e-01	ci right 5.463244e-01	k: 37984	n:70000
TTC3   70000 perm   22 sec   (3136 perm/sec)   p_kst 5.426286e-01   p_cons 1.008571e-02   p_joint 5.648571e-02

Joint ci ratio: 5.684866e-02	ci left: 5.450295e-02	ci right 5.770433e-02	k: 4487	n:80000
Cons ci ratio: 1.368643e-01	ci left: 9.454905e-03	ci right 1.085596e-02	k: 811	n:80000
KS ci ratio: 1.271621e-02	ci left: 5.394653e-01	ci right 5.463816e-01	k: 43434	n:80000
TTC3   80000 perm   26 sec   (3098 perm/sec)   p_kst 5.429250e-01   p_cons 1.013750e-02   p_joint 5.608750e-02

Joint ci ratio: 5.368200e-02	ci left: 5.442985e-02	ci right 5.744329e-02	k: 5033	n:90000
Cons ci ratio: 1.293592e-01	ci left: 9.446261e-03	ci right 1.076338e-02	k: 908	n:90000
KS ci ratio: 1.199227e-02	ci left: 5.395274e-01	ci right 5.460476e-01	k: 48851	n:90000
TTC3   90000 perm   29 sec   (3059 perm/sec)   p_kst 5.427889e-01   p_cons 1.008889e-02   p_joint 5.592222e-02

Joint ci ratio: 5.233105e-02	ci left: 5.173795e-02	ci right 5.452805e-02	k: 5312	n:100000
Cons ci ratio: 1.221118e-01	ci left: 9.576779e-03	ci right 1.083187e-02	k: 1019	n:100000
KS ci ratio: 1.136632e-02	ci left: 5.401564e-01	ci right 5.463411e-01	k: 54325	n:100000
TTC3   100000 perm   33 sec   (3012 perm/sec)   p_kst 5.432500e-01   p_cons 1.019000e-02   p_joint 5.312000e-02

Joint ci ratio: 4.950906e-02	ci left: 5.258173e-02	ci right 5.526004e-02	k: 5930	n:110000
Cons ci ratio: 1.212131e-01	ci left: 8.846987e-03	ci right 9.997283e-03	k: 1035	n:110000
KS ci ratio: 1.083509e-02	ci left: 5.404053e-01	ci right 5.463015e-01	k: 59769	n:110000
TTC3   110000 perm   37 sec   (2973 perm/sec)   p_kst 5.433545e-01   p_cons 9.409091e-03   p_joint 5.390909e-02

Joint ci ratio: 5.036335e-02	ci left: 4.684669e-02	ci right 4.927521e-02	k: 5766	n:120000
Cons ci ratio: 1.164267e-01	ci left: 8.813184e-03	ci right 9.910723e-03	k: 1122	n:120000
KS ci ratio: 1.036503e-02	ci left: 5.409517e-01	ci right 5.465962e-01	k: 65253	n:120000
TTC3   120000 perm   41 sec   (2935 perm/sec)   p_kst 5.437750e-01   p_cons 9.350000e-03   p_joint 4.805000e-02

Joint ci ratio: 5.074252e-02	ci left: 4.277746e-02	ci right 4.501217e-02	k: 5705	n:130000
Cons ci ratio: 1.118863e-01	ci left: 8.830212e-03	ci right 9.884156e-03	k: 1215	n:130000
KS ci ratio: 9.971035e-03	ci left: 5.404335e-01	ci right 5.458569e-01	k: 70609	n:130000
TTC3   130000 perm   45 sec   (2888 perm/sec)   p_kst 5.431462e-01   p_cons 9.346154e-03   p_joint 4.388462e-02

Joint ci ratio: 5.131991e-02	ci left: 3.897949e-02	ci right 4.103962e-02	k: 5600	n:140000
Cons ci ratio: 1.082149e-01	ci left: 8.782956e-03	ci right 9.794667e-03	k: 1299	n:140000
KS ci ratio: 9.608401e-03	ci left: 5.405291e-01	ci right 5.457549e-01	k: 76040	n:140000
TTC3   140000 perm   49 sec   (2855 perm/sec)   p_kst 5.431429e-01   p_cons 9.278571e-03   p_joint 4.000000e-02

Joint ci ratio: 4.893384e-02	ci left: 4.002184e-02	ci right 4.203595e-02	k: 6153	n:150000
Cons ci ratio: 1.038649e-01	ci left: 8.917835e-03	ci right 9.901268e-03	k: 1410	n:150000
KS ci ratio: 9.281659e-03	ci left: 5.406683e-01	ci right 5.457167e-01	k: 81479	n:150000
TTC3   150000 perm   53 sec   (2819 perm/sec)   p_kst 5.431933e-01   p_cons 9.400000e-03   p_joint 4.102000e-02

Joint ci ratio: 5.519962e-02	ci left: 2.971214e-02	ci right 3.140493e-02	k: 4888	n:160000
Cons ci ratio: 1.058821e-01	ci left: 8.043802e-03	ci right 8.949144e-03	k: 1358	n:160000
KS ci ratio: 8.995870e-03	ci left: 5.402551e-01	ci right 5.451433e-01	k: 86832	n:160000
TTC3   160000 perm   57 sec   (2791 perm/sec)   p_kst 5.427000e-01   p_cons 8.487500e-03   p_joint 3.055000e-02

Joint ci ratio: 5.253546e-02	ci left: 3.087803e-02	ci right 3.254976e-02	k: 5390	n:170000
Cons ci ratio: 1.030067e-01	ci left: 8.011739e-03	ci right 8.887501e-03	k: 1435	n:170000
KS ci ratio: 8.726142e-03	ci left: 5.403930e-01	ci right 5.451350e-01	k: 92270	n:170000
TTC3   170000 perm   62 sec   (2763 perm/sec)   p_kst 5.427647e-01   p_cons 8.441176e-03   p_joint 3.170588e-02

Joint ci ratio: 5.213629e-02	ci left: 2.965554e-02	ci right 3.124852e-02	k: 5480	n:180000
Cons ci ratio: 9.962560e-02	ci left: 8.102726e-03	ci right 8.957661e-03	k: 1534	n:180000
KS ci ratio: 8.482724e-03	ci left: 5.403173e-01	ci right 5.449257e-01	k: 97672	n:180000
TTC3   180000 perm   66 sec   (2734 perm/sec)   p_kst 5.426222e-01   p_cons 8.522222e-03   p_joint 3.044444e-02

Outputting figure to mutsig2_images.part000000000184/TTC3.17_6258_180000_0.54262_0.0085222_0.030444.png
                gene_name: TTC3
               theta_stop: 0.100 
                    nperm: 180000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.0085 
      ci_cons_bounds_left: 0.0081 
     ci_cons_bounds_right: 0.0090 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.030 
    ci_joint_bounds_right: 0.031 

Current progress: 3 percent done.
TULP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.159391e-02	ci left: 1.476637e-01	ci right 1.619380e-01	k: 1547	n:10000
Cons ci ratio: 4.737663e-02	ci left: 3.966523e-01	ci right 4.160023e-01	k: 4063	n:10000
KS ci ratio: 1.169468e-01	ci left: 9.506351e-02	ci right 1.069701e-01	k: 1009	n:10000
TULP4   10000 perm   2 sec   (4113 perm/sec)   p_kst 1.009000e-01   p_cons 4.063000e-01   p_joint 1.547000e-01

Joint ci ratio: 7.348642e-02	ci left: 1.199542e-01	ci right 1.291552e-01	k: 2490	n:20000
Cons ci ratio: 3.306650e-02	ci left: 4.058152e-01	ci right 4.195102e-01	k: 8253	n:20000
KS ci ratio: 8.109712e-02	ci left: 1.003422e-01	ci right 1.088731e-01	k: 2091	n:20000
TULP4   20000 perm   5 sec   (3754 perm/sec)   p_kst 1.045500e-01   p_cons 4.126500e-01   p_joint 1.245000e-01

Outputting figure to mutsig2_images.part000000000184/TULP4.14_4688_20000_0.10455_0.41265_0.1245.png
                gene_name: TULP4
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 4 percent done.
TTC37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.902845e-02	ci left: 6.363347e-01	ci right 6.551803e-01	k: 6458	n:10000
Cons ci ratio: 1.559459e-02	ci left: 8.565131e-01	ci right 8.700745e-01	k: 8634	n:10000
KS ci ratio: 4.978634e-02	ci left: 3.730595e-01	ci right 3.922089e-01	k: 3826	n:10000
TTC37   10000 perm   2 sec   (4205 perm/sec)   p_kst 3.826000e-01   p_cons 8.634000e-01   p_joint 6.458000e-01

Outputting figure to mutsig2_images.part000000000184/TTC37.11_4855_10000_0.3826_0.8634_0.6458.png
                gene_name: TTC37
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 6 percent done.
TTK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.425286e-02	ci left: 3.335933e-01	ci right 3.522982e-01	k: 3429	n:10000
Cons ci ratio: 9.247904e-02	ci left: 1.452116e-01	ci right 1.593916e-01	k: 1522	n:10000
KS ci ratio: 3.472863e-02	ci left: 5.504051e-01	ci right 5.699598e-01	k: 5602	n:10000
TTK   10000 perm   2 sec   (4772 perm/sec)   p_kst 5.602000e-01   p_cons 1.522000e-01   p_joint 3.429000e-01

Outputting figure to mutsig2_images.part000000000184/TTK.10_2658_10000_0.5602_0.1522_0.3429.png
                gene_name: TTK
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 7 percent done.
TUBA3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.730108e-02	ci left: 3.095710e-01	ci right 3.279347e-01	k: 3187	n:10000
Cons ci ratio: 1.080128e-02	ci left: 9.243065e-01	ci right 9.344416e-01	k: 9295	n:10000
KS ci ratio: 7.548344e-02	ci left: 2.043197e-01	ci right 2.204482e-01	k: 2123	n:10000
TUBA3C   10000 perm   2 sec   (5328 perm/sec)   p_kst 2.123000e-01   p_cons 9.295000e-01   p_joint 3.187000e-01

Outputting figure to mutsig2_images.part000000000184/TUBA3C.9_1373_10000_0.2123_0.9295_0.3187.png
                gene_name: TUBA3C
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 9 percent done.
TTLL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.982218e-02	ci left: 1.268913e-01	ci right 1.403229e-01	k: 1335	n:10000
Cons ci ratio: 4.981796e-02	ci left: 3.727610e-01	ci right 3.919076e-01	k: 3823	n:10000
KS ci ratio: 1.306344e-01	ci left: 7.717981e-02	ci right 8.806479e-02	k: 825	n:10000
TTLL2   10000 perm   2 sec   (5370 perm/sec)   p_kst 8.250000e-02   p_cons 3.823000e-01   p_joint 1.335000e-01

Joint ci ratio: 6.612505e-02	ci left: 1.444857e-01	ci right 1.544164e-01	k: 2988	n:20000
Cons ci ratio: 3.667125e-02	ci left: 3.568787e-01	ci right 3.702609e-01	k: 7271	n:20000
KS ci ratio: 9.210118e-02	ci left: 7.921235e-02	ci right 8.690937e-02	k: 1660	n:20000
TTLL2   20000 perm   4 sec   (4909 perm/sec)   p_kst 8.300000e-02   p_cons 3.635500e-01   p_joint 1.494000e-01

Outputting figure to mutsig2_images.part000000000184/TTLL2.8_1791_20000_0.083_0.36355_0.1494.png
                gene_name: TTLL2
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.083 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.087 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 10 percent done.
TTLL7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.975474e-02	ci left: 3.733580e-01	ci right 3.925103e-01	k: 3829	n:10000
Cons ci ratio: 2.422036e-02	ci left: 7.148214e-01	ci right 7.324482e-01	k: 7237	n:10000
KS ci ratio: 7.012086e-02	ci left: 2.296806e-01	ci right 2.464723e-01	k: 2380	n:10000
TTLL7   10000 perm   2 sec   (4832 perm/sec)   p_kst 2.380000e-01   p_cons 7.237000e-01   p_joint 3.829000e-01

Outputting figure to mutsig2_images.part000000000184/TTLL7.8_2744_10000_0.238_0.7237_0.3829.png
                gene_name: TTLL7
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 11 percent done.
TUSC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.969557e-01	ci left: 3.433772e-02	ci right 4.193438e-02	k: 380	n:10000
Cons ci ratio: 4.602876e-01	ci left: 5.549202e-03	ci right 8.947365e-03	k: 71	n:10000
KS ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
TUSC3   10000 perm   2 sec   (5424 perm/sec)   p_kst 1.072000e-01   p_cons 7.100000e-03   p_joint 3.800000e-02

Joint ci ratio: 1.582921e-01	ci left: 2.739088e-02	ci right 3.214714e-02	k: 594	n:20000
Cons ci ratio: 3.221178e-01	ci left: 6.167283e-03	ci right 8.579269e-03	k: 146	n:20000
KS ci ratio: 7.982455e-02	ci left: 1.032886e-01	ci right 1.119259e-01	k: 2151	n:20000
TUSC3   20000 perm   4 sec   (5006 perm/sec)   p_kst 1.075500e-01   p_cons 7.300000e-03   p_joint 2.970000e-02

Joint ci ratio: 1.550290e-01	ci left: 1.924700e-02	ci right 2.251338e-02	k: 625	n:30000
Cons ci ratio: 2.468834e-01	ci left: 7.304536e-03	ci right 9.392360e-03	k: 249	n:30000
KS ci ratio: 6.259873e-02	ci left: 1.119696e-01	ci right 1.192383e-01	k: 3467	n:30000
TUSC3   30000 perm   6 sec   (4869 perm/sec)   p_kst 1.155667e-01   p_cons 8.300000e-03   p_joint 2.083333e-02

Joint ci ratio: 1.549399e-01	ci left: 1.452856e-02	ci right 1.699247e-02	k: 629	n:40000
Cons ci ratio: 2.129508e-01	ci left: 7.505266e-03	ci right 9.317188e-03	k: 335	n:40000
KS ci ratio: 5.419901e-02	ci left: 1.125067e-01	ci right 1.187992e-01	k: 4625	n:40000
TUSC3   40000 perm   8 sec   (4761 perm/sec)   p_kst 1.156250e-01   p_cons 8.375000e-03   p_joint 1.572500e-02

Joint ci ratio: 1.150784e-01	ci left: 2.137335e-02	ci right 2.400247e-02	k: 1133	n:50000
Cons ci ratio: 1.918563e-01	ci left: 7.485326e-03	ci right 9.092548e-03	k: 413	n:50000
KS ci ratio: 4.840383e-02	ci left: 1.131461e-01	ci right 1.187785e-01	k: 5797	n:50000
TUSC3   50000 perm   11 sec   (4665 perm/sec)   p_kst 1.159400e-01   p_cons 8.260000e-03   p_joint 2.266000e-02

Joint ci ratio: 1.147350e-01	ci left: 1.798736e-02	ci right 2.019284e-02	k: 1144	n:60000
Cons ci ratio: 1.751048e-01	ci left: 7.557702e-03	ci right 9.023790e-03	k: 496	n:60000
KS ci ratio: 4.430761e-02	ci left: 1.128373e-01	ci right 1.179666e-01	k: 6923	n:60000
TUSC3   60000 perm   13 sec   (4498 perm/sec)   p_kst 1.153833e-01   p_cons 8.266667e-03   p_joint 1.906667e-02

Joint ci ratio: 1.144381e-01	ci left: 1.554148e-02	ci right 1.744176e-02	k: 1153	n:70000
Cons ci ratio: 1.615316e-01	ci left: 7.668634e-03	ci right 9.029736e-03	k: 583	n:70000
KS ci ratio: 4.115928e-02	ci left: 1.123482e-01	ci right 1.170837e-01	k: 8029	n:70000
TUSC3   70000 perm   16 sec   (4426 perm/sec)   p_kst 1.147000e-01   p_cons 8.328571e-03   p_joint 1.647143e-02

Joint ci ratio: 1.049180e-01	ci left: 1.624945e-02	ci right 1.806081e-02	k: 1371	n:80000
Cons ci ratio: 1.504670e-01	ci left: 7.779200e-03	ci right 9.056834e-03	k: 672	n:80000
KS ci ratio: 3.841863e-02	ci left: 1.129334e-01	ci right 1.173695e-01	k: 9211	n:80000
TUSC3   80000 perm   18 sec   (4339 perm/sec)   p_kst 1.151375e-01   p_cons 8.400000e-03   p_joint 1.713750e-02

Joint ci ratio: 1.035727e-01	ci left: 1.485461e-02	ci right 1.648793e-02	k: 1409	n:90000
Cons ci ratio: 1.400201e-01	ci left: 8.028519e-03	ci right 9.247913e-03	k: 776	n:90000
KS ci ratio: 3.626398e-02	ci left: 1.128234e-01	ci right 1.170014e-01	k: 10341	n:90000
TUSC3   90000 perm   21 sec   (4269 perm/sec)   p_kst 1.149000e-01   p_cons 8.622222e-03   p_joint 1.565556e-02

Joint ci ratio: 9.378600e-02	ci left: 1.636412e-02	ci right 1.798406e-02	k: 1716	n:100000
Cons ci ratio: 1.334075e-01	ci left: 7.988644e-03	ci right 9.140133e-03	k: 855	n:100000
KS ci ratio: 3.443541e-02	ci left: 1.127411e-01	ci right 1.167013e-01	k: 11471	n:100000
TUSC3   100000 perm   24 sec   (4190 perm/sec)   p_kst 1.147100e-01   p_cons 8.550000e-03   p_joint 1.716000e-02

Joint ci ratio: 7.994252e-02	ci left: 2.053508e-02	ci right 2.225392e-02	k: 2352	n:110000
Cons ci ratio: 1.231477e-01	ci left: 8.564892e-03	ci right 9.697579e-03	k: 1003	n:110000
KS ci ratio: 3.285818e-02	ci left: 1.126781e-01	ci right 1.164513e-01	k: 12601	n:110000
TUSC3   110000 perm   27 sec   (4122 perm/sec)   p_kst 1.145545e-01   p_cons 9.118182e-03   p_joint 2.138182e-02

Joint ci ratio: 7.718550e-02	ci left: 2.022887e-02	ci right 2.186106e-02	k: 2524	n:120000
Cons ci ratio: 1.186879e-01	ci left: 8.473388e-03	ci right 9.550541e-03	k: 1080	n:120000
KS ci ratio: 3.145239e-02	ci left: 1.128029e-01	ci right 1.164158e-01	k: 13752	n:120000
TUSC3   120000 perm   30 sec   (4067 perm/sec)   p_kst 1.146000e-01   p_cons 9.000000e-03   p_joint 2.103333e-02

Joint ci ratio: 7.465263e-02	ci left: 1.999331e-02	ci right 2.155125e-02	k: 2699	n:130000
Cons ci ratio: 1.133057e-01	ci left: 8.605886e-03	ci right 9.646956e-03	k: 1185	n:130000
KS ci ratio: 3.024037e-02	ci left: 1.127280e-01	ci right 1.161969e-01	k: 14879	n:130000
TUSC3   130000 perm   32 sec   (4011 perm/sec)   p_kst 1.144538e-01   p_cons 9.115385e-03   p_joint 2.076154e-02

Joint ci ratio: 7.336297e-02	ci left: 1.925199e-02	ci right 2.072513e-02	k: 2797	n:140000
Cons ci ratio: 1.094105e-01	ci left: 8.588353e-03	ci right 9.589281e-03	k: 1271	n:140000
KS ci ratio: 2.905811e-02	ci left: 1.133617e-01	ci right 1.167114e-01	k: 16104	n:140000
TUSC3   140000 perm   35 sec   (3949 perm/sec)   p_kst 1.150286e-01   p_cons 9.078571e-03   p_joint 1.997857e-02

Joint ci ratio: 6.093748e-02	ci left: 2.602795e-02	ci right 2.767041e-02	k: 4026	n:150000
Cons ci ratio: 1.061281e-01	ci left: 8.534741e-03	ci right 9.497714e-03	k: 1351	n:150000
KS ci ratio: 2.811181e-02	ci left: 1.131379e-01	ci right 1.163703e-01	k: 17212	n:150000
TUSC3   150000 perm   39 sec   (3889 perm/sec)   p_kst 1.147467e-01   p_cons 9.006667e-03   p_joint 2.684000e-02

Joint ci ratio: 5.869754e-02	ci left: 2.632215e-02	ci right 2.792005e-02	k: 4338	n:160000
Cons ci ratio: 1.025478e-01	ci left: 8.585675e-03	ci right 9.519745e-03	k: 1447	n:160000
KS ci ratio: 2.723216e-02	ci left: 1.130928e-01	ci right 1.162212e-01	k: 18344	n:160000
TUSC3   160000 perm   42 sec   (3833 perm/sec)   p_kst 1.146500e-01   p_cons 9.043750e-03   p_joint 2.711250e-02

Joint ci ratio: 5.730493e-02	ci left: 2.602003e-02	ci right 2.756087e-02	k: 4553	n:170000
Cons ci ratio: 9.969874e-02	ci left: 8.562251e-03	ci right 9.466377e-03	k: 1531	n:170000
KS ci ratio: 2.644097e-02	ci left: 1.129725e-01	ci right 1.160054e-01	k: 19462	n:170000
TUSC3   170000 perm   45 sec   (3778 perm/sec)   p_kst 1.144824e-01   p_cons 9.005882e-03   p_joint 2.678235e-02

Outputting figure to mutsig2_images.part000000000184/TUSC3.8_1107_170000_0.11448_0.0090059_0.026782.png
                gene_name: TUSC3
               theta_stop: 0.100 
                    nperm: 170000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.0090 
      ci_cons_bounds_left: 0.0086 
     ci_cons_bounds_right: 0.0095 
                  p_joint: 0.027 
     ci_joint_bounds_left: 0.026 
    ci_joint_bounds_right: 0.028 

Current progress: 13 percent done.
TTLL9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.390573e-02	ci left: 7.200716e-01	ci right 7.375949e-01	k: 7289	n:10000
KS ci ratio: 7.810253e-03	ci left: 9.579609e-01	ci right 9.655670e-01	k: 9619	n:10000
TTLL9   10000 perm   2 sec   (6083 perm/sec)   p_kst 9.619000e-01   p_cons 7.289000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TTLL9.7_1376_10000_0.9619_0.7289_1.png
                gene_name: TTLL9
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
TUBGCP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.667305e-02	ci left: 5.233633e-01	ci right 5.430173e-01	k: 5332	n:10000
Cons ci ratio: 1.031915e-01	ci left: 1.195555e-01	ci right 1.326632e-01	k: 1260	n:10000
KS ci ratio: 1.370007e-02	ci left: 8.849326e-01	ci right 8.972385e-01	k: 8912	n:10000
TUBGCP3   10000 perm   2 sec   (4873 perm/sec)   p_kst 8.912000e-01   p_cons 1.260000e-01   p_joint 5.332000e-01

Joint ci ratio: 3.923825e-02	ci left: 3.263188e-01	ci right 3.394298e-01	k: 6657	n:20000
Cons ci ratio: 7.326820e-02	ci left: 1.205939e-01	ci right 1.298153e-01	k: 2503	n:20000
KS ci ratio: 9.578505e-03	ci left: 8.889898e-01	ci right 8.975954e-01	k: 17867	n:20000
TUBGCP3   20000 perm   4 sec   (4468 perm/sec)   p_kst 8.933500e-01   p_cons 1.251500e-01   p_joint 3.328500e-01

Outputting figure to mutsig2_images.part000000000184/TUBGCP3.7_2812_20000_0.89335_0.12515_0.33285.png
                gene_name: TUBGCP3
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 16 percent done.
TTC30A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.527199e-02	ci left: 4.186732e-01	ci right 4.381685e-01	k: 4284	n:10000
Cons ci ratio: 1.162697e-02	ci left: 9.136856e-01	ci right 9.244688e-01	k: 9192	n:10000
KS ci ratio: 5.591874e-02	ci left: 3.201890e-01	ci right 3.387104e-01	k: 3294	n:10000
TTC30A   10000 perm   2 sec   (5219 perm/sec)   p_kst 3.294000e-01   p_cons 9.192000e-01   p_joint 4.284000e-01

Outputting figure to mutsig2_images.part000000000184/TTC30A.6_2002_10000_0.3294_0.9192_0.4284.png
                gene_name: TTC30A
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 17 percent done.
TTC30B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.227754e-02	ci left: 4.523904e-01	ci right 4.720316e-01	k: 4622	n:10000
Cons ci ratio: 4.109773e-02	ci left: 4.664693e-01	ci right 4.861445e-01	k: 4763	n:10000
KS ci ratio: 6.055541e-02	ci left: 2.862707e-01	ci right 3.042488e-01	k: 2952	n:10000
TTC30B   10000 perm   2 sec   (5066 perm/sec)   p_kst 2.952000e-01   p_cons 4.763000e-01   p_joint 4.622000e-01

Outputting figure to mutsig2_images.part000000000184/TTC30B.6_2002_10000_0.2952_0.4763_0.4622.png
                gene_name: TTC30B
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 19 percent done.
TTYH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.236629e-02	ci left: 7.458401e-01	ci right 7.628115e-01	k: 7544	n:10000
Cons ci ratio: 3.292450e-02	ci left: 5.765733e-01	ci right 5.959764e-01	k: 5863	n:10000
KS ci ratio: 2.768949e-02	ci left: 6.577660e-01	ci right 6.763366e-01	k: 6671	n:10000
TTYH2   10000 perm   2 sec   (5549 perm/sec)   p_kst 6.671000e-01   p_cons 5.863000e-01   p_joint 7.544000e-01

Outputting figure to mutsig2_images.part000000000184/TTYH2.6_1661_10000_0.6671_0.5863_0.7544.png
                gene_name: TTYH2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 20 percent done.
TTLL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.659877e-02	ci left: 2.486549e-01	ci right 2.658867e-01	k: 2572	n:10000
Cons ci ratio: 6.654654e-02	ci left: 2.489515e-01	ci right 2.661899e-01	k: 2575	n:10000
KS ci ratio: 8.988259e-02	ci left: 1.525700e-01	ci right 1.670288e-01	k: 1597	n:10000
TTLL4   10000 perm   2 sec   (4932 perm/sec)   p_kst 1.597000e-01   p_cons 2.575000e-01   p_joint 2.572000e-01

Outputting figure to mutsig2_images.part000000000184/TTLL4.5_3672_10000_0.1597_0.2575_0.2572.png
                gene_name: TTLL4
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 21 percent done.
TUB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.844721e-02	ci left: 6.455889e-01	ci right 6.643208e-01	k: 6550	n:10000
KS ci ratio: 4.750450e-02	ci left: 3.953575e-01	ci right 4.146978e-01	k: 4050	n:10000
TUB   10000 perm   2 sec   (5918 perm/sec)   p_kst 4.050000e-01   p_cons 6.550000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TUB.5_1780_10000_0.405_0.655_1.png
                gene_name: TUB
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 23 percent done.
TUBA3E
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.125513e-02	ci left: 6.016648e-01	ci right 6.208704e-01	k: 6113	n:10000
Cons ci ratio: 2.884472e-02	ci left: 6.392513e-01	ci right 6.580620e-01	k: 6487	n:10000
KS ci ratio: 4.535527e-02	ci left: 4.177760e-01	ci right 4.372662e-01	k: 4275	n:10000
TUBA3E   10000 perm   2 sec   (6186 perm/sec)   p_kst 4.275000e-01   p_cons 6.487000e-01   p_joint 6.113000e-01

Outputting figure to mutsig2_images.part000000000184/TUBA3E.5_1373_10000_0.4275_0.6487_0.6113.png
                gene_name: TUBA3E
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 24 percent done.
TUBE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.033296e-02	ci left: 7.798558e-01	ci right 7.959761e-01	k: 7880	n:10000
Cons ci ratio: 9.262005e-03	ci left: 9.426349e-01	ci right 9.515024e-01	k: 9472	n:10000
KS ci ratio: 2.962739e-02	ci left: 6.268832e-01	ci right 6.458373e-01	k: 6364	n:10000
TUBE1   10000 perm   2 sec   (5789 perm/sec)   p_kst 6.364000e-01   p_cons 9.472000e-01   p_joint 7.880000e-01

Outputting figure to mutsig2_images.part000000000184/TUBE1.5_1476_10000_0.6364_0.9472_0.788.png
                gene_name: TUBE1
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 26 percent done.
TUBGCP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.149235e-02	ci left: 5.980500e-01	ci right 6.172873e-01	k: 6077	n:10000
Cons ci ratio: 1.460845e-02	ci left: 8.715273e-01	ci right 8.844516e-01	k: 8781	n:10000
KS ci ratio: 3.970690e-02	ci left: 4.836541e-01	ci right 5.033497e-01	k: 4935	n:10000
TUBGCP4   10000 perm   2 sec   (5863 perm/sec)   p_kst 4.935000e-01   p_cons 8.781000e-01   p_joint 6.077000e-01

Outputting figure to mutsig2_images.part000000000184/TUBGCP4.5_2073_10000_0.4935_0.8781_0.6077.png
                gene_name: TUBGCP4
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 27 percent done.
TUBGCP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.834659e-02	ci left: 6.471987e-01	ci right 6.659100e-01	k: 6566	n:10000
Cons ci ratio: 3.992190e-02	ci left: 4.809557e-01	ci right 5.006496e-01	k: 4908	n:10000
KS ci ratio: 6.838763e-02	ci left: 2.387696e-01	ci right 2.557779e-01	k: 2472	n:10000
TUBGCP5   10000 perm   2 sec   (5617 perm/sec)   p_kst 2.472000e-01   p_cons 4.908000e-01   p_joint 6.566000e-01

Outputting figure to mutsig2_images.part000000000184/TUBGCP5.5_3214_10000_0.2472_0.4908_0.6566.png
                gene_name: TUBGCP5
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 29 percent done.
TULP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.158161e-02	ci left: 2.223737e-01	ci right 2.389835e-01	k: 2306	n:10000
Cons ci ratio: 5.072644e-02	ci left: 3.643054e-01	ci right 3.833682e-01	k: 3738	n:10000
KS ci ratio: 7.550600e-02	ci left: 2.042211e-01	ci right 2.203469e-01	k: 2122	n:10000
TULP2   10000 perm   2 sec   (5945 perm/sec)   p_kst 2.122000e-01   p_cons 3.738000e-01   p_joint 2.306000e-01

Outputting figure to mutsig2_images.part000000000184/TULP2.5_1611_10000_0.2122_0.3738_0.2306.png
                gene_name: TULP2
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 30 percent done.
TULP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.366825e-02	ci left: 3.384607e-01	ci right 3.572280e-01	k: 3478	n:10000
Cons ci ratio: 4.925322e-02	ci left: 3.781344e-01	ci right 3.973310e-01	k: 3877	n:10000
KS ci ratio: 6.049727e-02	ci left: 2.866670e-01	ci right 3.046522e-01	k: 2956	n:10000
TULP3   10000 perm   2 sec   (5391 perm/sec)   p_kst 2.956000e-01   p_cons 3.877000e-01   p_joint 3.478000e-01

Outputting figure to mutsig2_images.part000000000184/TULP3.5_1574_10000_0.2956_0.3877_0.3478.png
                gene_name: TULP3
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 31 percent done.
TWF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.696667e-02	ci left: 2.465785e-01	ci right 2.637644e-01	k: 2551	n:10000
Cons ci ratio: 1.498109e-02	ci left: 8.659064e-01	ci right 8.790757e-01	k: 8726	n:10000
KS ci ratio: 1.053537e-01	ci left: 1.151575e-01	ci right 1.280638e-01	k: 1215	n:10000
TWF1   10000 perm   2 sec   (5863 perm/sec)   p_kst 1.215000e-01   p_cons 8.726000e-01   p_joint 2.551000e-01

Joint ci ratio: 4.556566e-02	ci left: 2.639056e-01	ci right 2.762613e-01	k: 5401	n:20000
Cons ci ratio: 1.059940e-02	ci left: 8.677476e-01	ci right 8.770438e-01	k: 17449	n:20000
KS ci ratio: 7.712032e-02	ci left: 1.099708e-01	ci right 1.188416e-01	k: 2287	n:20000
TWF1   20000 perm   4 sec   (5268 perm/sec)   p_kst 1.143500e-01   p_cons 8.724500e-01   p_joint 2.700500e-01

Outputting figure to mutsig2_images.part000000000184/TWF1.5_1191_20000_0.11435_0.87245_0.27005.png
                gene_name: TWF1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 33 percent done.
TXK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.856597e-02	ci left: 8.090764e-01	ci right 8.243387e-01	k: 8168	n:10000
Cons ci ratio: 2.255936e-02	ci left: 7.426043e-01	ci right 7.596492e-01	k: 7512	n:10000
KS ci ratio: 3.041956e-02	ci left: 6.145218e-01	ci right 6.336059e-01	k: 6241	n:10000
TXK   10000 perm   2 sec   (5643 perm/sec)   p_kst 6.241000e-01   p_cons 7.512000e-01   p_joint 8.168000e-01

Outputting figure to mutsig2_images.part000000000184/TXK.5_1644_10000_0.6241_0.7512_0.8168.png
                gene_name: TXK
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 34 percent done.
TTC31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.105166e-02	ci left: 6.047779e-01	ci right 6.239554e-01	k: 6144	n:10000
Cons ci ratio: 2.482671e-02	ci left: 7.047290e-01	ci right 7.225464e-01	k: 7137	n:10000
KS ci ratio: 3.618240e-02	ci left: 5.300710e-01	ci right 5.497057e-01	k: 5399	n:10000
TTC31   10000 perm   2 sec   (5525 perm/sec)   p_kst 5.399000e-01   p_cons 7.137000e-01   p_joint 6.144000e-01

Outputting figure to mutsig2_images.part000000000184/TTC31.4_1612_10000_0.5399_0.7137_0.6144.png
                gene_name: TTC31
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 36 percent done.
TTC35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.069629e-02	ci left: 4.713638e-01	ci right 4.910472e-01	k: 4812	n:10000
Cons ci ratio: 8.377868e-02	ci left: 1.720224e-01	ci right 1.871647e-01	k: 1795	n:10000
KS ci ratio: 2.493607e-02	ci left: 7.029129e-01	ci right 7.207635e-01	k: 7119	n:10000
TTC35   10000 perm   2 sec   (5990 perm/sec)   p_kst 7.119000e-01   p_cons 1.795000e-01   p_joint 4.812000e-01

Outputting figure to mutsig2_images.part000000000184/TTC35.4_938_10000_0.7119_0.1795_0.4812.png
                gene_name: TTC35
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 37 percent done.
TTC39C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.838079e-01	ci left: 3.948997e-02	ci right 4.757866e-02	k: 434	n:10000
Cons ci ratio: 2.348632e-01	ci left: 2.391158e-02	ci right 3.036784e-02	k: 270	n:10000
KS ci ratio: 6.434124e-02	ci left: 2.619103e-01	ci right 2.794235e-01	k: 2706	n:10000
TTC39C   10000 perm   2 sec   (5940 perm/sec)   p_kst 2.706000e-01   p_cons 2.700000e-02   p_joint 4.340000e-02

Joint ci ratio: 9.599980e-02	ci left: 7.324420e-02	ci right 8.067935e-02	k: 1538	n:20000
Cons ci ratio: 1.640659e-01	ci left: 2.546943e-02	ci right 3.006924e-02	k: 554	n:20000
KS ci ratio: 4.554256e-02	ci left: 2.641041e-01	ci right 2.764627e-01	k: 5405	n:20000
TTC39C   20000 perm   4 sec   (5323 perm/sec)   p_kst 2.702500e-01   p_cons 2.770000e-02   p_joint 7.690000e-02

Joint ci ratio: 7.811858e-02	ci left: 7.440048e-02	ci right 8.048165e-02	k: 2322	n:30000
Cons ci ratio: 1.337539e-01	ci left: 2.596885e-02	ci right 2.972334e-02	k: 834	n:30000
KS ci ratio: 3.717600e-02	ci left: 2.653465e-01	ci right 2.754313e-01	k: 8111	n:30000
TTC39C   30000 perm   6 sec   (5083 perm/sec)   p_kst 2.703667e-01   p_cons 2.780000e-02   p_joint 7.740000e-02

Joint ci ratio: 6.814701e-02	ci left: 7.379051e-02	ci right 7.902118e-02	k: 3055	n:40000
Cons ci ratio: 1.170479e-01	ci left: 2.567637e-02	ci right 2.889275e-02	k: 1090	n:40000
KS ci ratio: 3.214244e-02	ci left: 2.666733e-01	ci right 2.754099e-01	k: 10841	n:40000
TTC39C   40000 perm   8 sec   (4924 perm/sec)   p_kst 2.710250e-01   p_cons 2.725000e-02   p_joint 7.637500e-02

Joint ci ratio: 6.207705e-02	ci left: 7.156259e-02	ci right 7.616703e-02	k: 3692	n:50000
Cons ci ratio: 1.050380e-01	ci left: 2.567477e-02	ci right 2.854049e-02	k: 1354	n:50000
KS ci ratio: 2.861654e-02	ci left: 2.689590e-01	ci right 2.767874e-01	k: 13643	n:50000
TTC39C   50000 perm   10 sec   (4797 perm/sec)   p_kst 2.728600e-01   p_cons 2.708000e-02   p_joint 7.384000e-02

Joint ci ratio: 5.561573e-02	ci left: 7.433605e-02	ci right 7.860502e-02	k: 4587	n:60000
Cons ci ratio: 9.469573e-02	ci left: 2.645025e-02	ci right 2.909569e-02	k: 1665	n:60000
KS ci ratio: 2.613947e-02	ci left: 2.690563e-01	ci right 2.761991e-01	k: 16357	n:60000
TTC39C   60000 perm   13 sec   (4689 perm/sec)   p_kst 2.726167e-01   p_cons 2.775000e-02   p_joint 7.645000e-02

Outputting figure to mutsig2_images.part000000000184/TTC39C.4_1808_60000_0.27262_0.02775_0.07645.png
                gene_name: TTC39C
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.079 

Current progress: 39 percent done.
TTF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.977843e-02	ci left: 4.827546e-01	ci right 5.024497e-01	k: 4926	n:10000
KS ci ratio: 5.612854e-03	ci left: 9.770621e-01	ci right 9.826535e-01	k: 9800	n:10000
TTF2   10000 perm   2 sec   (5596 perm/sec)   p_kst 9.800000e-01   p_cons 4.926000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TTF2.4_3581_10000_0.98_0.4926_1.png
                gene_name: TTF2
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 40 percent done.
TUBAL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.507648e-03	ci left: 9.608952e-01	ci right 9.682310e-01	k: 9647	n:10000
KS ci ratio: 2.383922e-02	ci left: 7.211824e-01	ci right 7.386835e-01	k: 7300	n:10000
TUBAL3   10000 perm   2 sec   (6120 perm/sec)   p_kst 7.300000e-01   p_cons 9.647000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TUBAL3.4_1357_10000_0.73_0.9647_1.png
                gene_name: TUBAL3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
TXLNA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.708085e-02	ci left: 6.676335e-01	ci right 6.860634e-01	k: 6769	n:10000
Cons ci ratio: 3.065987e-02	ci left: 6.108046e-01	ci right 6.299252e-01	k: 6204	n:10000
KS ci ratio: 4.402797e-02	ci left: 4.323342e-01	ci right 4.518996e-01	k: 4421	n:10000
TXLNA   10000 perm   2 sec   (5989 perm/sec)   p_kst 4.421000e-01   p_cons 6.204000e-01   p_joint 6.769000e-01

Outputting figure to mutsig2_images.part000000000184/TXLNA.4_1681_10000_0.4421_0.6204_0.6769.png
                gene_name: TXLNA
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 43 percent done.
TTC39B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.962757e-02	ci left: 4.846536e-01	ci right 5.043496e-01	k: 4945	n:10000
Cons ci ratio: 4.184646e-02	ci left: 4.574819e-01	ci right 4.771372e-01	k: 4673	n:10000
KS ci ratio: 4.637034e-02	ci left: 4.070126e-01	ci right 4.264360e-01	k: 4167	n:10000
TTC39B   10000 perm   2 sec   (5832 perm/sec)   p_kst 4.167000e-01   p_cons 4.673000e-01   p_joint 4.945000e-01

Outputting figure to mutsig2_images.part000000000184/TTC39B.3_2150_10000_0.4167_0.4673_0.4945.png
                gene_name: TTC39B
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 44 percent done.
TTC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.457181e-02	ci left: 7.089672e-01	ci right 7.267058e-01	k: 7179	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
TTC5   10000 perm   2 sec   (5982 perm/sec)   p_kst 1   p_cons 7.179000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TTC5.3_1363_10000_1_0.7179_1.png
                gene_name: TTC5
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
TTC7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.663683e-02	ci left: 8.402009e-01	ci right 8.543961e-01	k: 8474	n:10000
KS ci ratio: 1.557477e-02	ci left: 8.568193e-01	ci right 8.703681e-01	k: 8637	n:10000
TTC7A   10000 perm   2 sec   (5693 perm/sec)   p_kst 8.637000e-01   p_cons 8.474000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TTC7A.3_2657_10000_0.8637_0.8474_1.png
                gene_name: TTC7A
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
TTL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.923811e-02	ci left: 6.330162e-01	ci right 6.519008e-01	k: 6425	n:10000
Cons ci ratio: 4.877944e-02	ci left: 3.827127e-01	ci right 4.019500e-01	k: 3923	n:10000
KS ci ratio: 3.566129e-02	ci left: 5.372812e-01	ci right 5.568913e-01	k: 5471	n:10000
TTL   10000 perm   2 sec   (6180 perm/sec)   p_kst 5.471000e-01   p_cons 3.923000e-01   p_joint 6.425000e-01

Outputting figure to mutsig2_images.part000000000184/TTL.3_1162_10000_0.5471_0.3923_0.6425.png
                gene_name: TTL
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 49 percent done.
TTLL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.206560e-02	ci left: 4.548861e-01	ci right 4.745345e-01	k: 4647	n:10000
Cons ci ratio: 5.392946e-02	ci left: 3.362752e-01	ci right 3.550148e-01	k: 3456	n:10000
KS ci ratio: 2.610159e-02	ci left: 6.836528e-01	ci right 7.018348e-01	k: 6928	n:10000
TTLL3   10000 perm   2 sec   (5701 perm/sec)   p_kst 6.928000e-01   p_cons 3.456000e-01   p_joint 4.647000e-01

Outputting figure to mutsig2_images.part000000000184/TTLL3.3_2367_10000_0.6928_0.3456_0.4647.png
                gene_name: TTLL3
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 50 percent done.
TTLL6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.854533e-02	ci left: 1.915089e-01	ci right 2.072666e-01	k: 1993	n:10000
Cons ci ratio: 3.978354e-03	ci left: 9.877409e-01	ci right 9.917661e-01	k: 9899	n:10000
KS ci ratio: 1.751436e-01	ci left: 4.350916e-02	ci right 5.195681e-02	k: 476	n:10000
TTLL6   10000 perm   2 sec   (5574 perm/sec)   p_kst 4.760000e-02   p_cons 9.899000e-01   p_joint 1.993000e-01

Joint ci ratio: 6.764882e-02	ci left: 1.388655e-01	ci right 1.486383e-01	k: 2874	n:20000
Cons ci ratio: 2.685264e-03	ci left: 9.893244e-01	ci right 9.920300e-01	k: 19815	n:20000
KS ci ratio: 1.253030e-01	ci left: 4.371988e-02	ci right 4.961282e-02	k: 932	n:20000
TTLL6   20000 perm   4 sec   (5009 perm/sec)   p_kst 4.660000e-02   p_cons 9.907500e-01   p_joint 1.437000e-01

Joint ci ratio: 4.550576e-02	ci left: 1.937678e-01	ci right 2.028240e-01	k: 5948	n:30000
Cons ci ratio: 2.408485e-03	ci left: 9.875791e-01	ci right 9.899916e-01	k: 29665	n:30000
KS ci ratio: 9.830525e-02	ci left: 4.785375e-02	ci right 5.283379e-02	k: 1509	n:30000
TTLL6   30000 perm   6 sec   (4772 perm/sec)   p_kst 5.030000e-02   p_cons 9.888333e-01   p_joint 1.982667e-01

Outputting figure to mutsig2_images.part000000000184/TTLL6.3_2817_30000_0.0503_0.98883_0.19827.png
                gene_name: TTLL6
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.048 
       ci_ks_bounds_right: 0.053 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 51 percent done.
TTPA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.295548e-02	ci left: 4.445057e-01	ci right 4.641209e-01	k: 4543	n:10000
Cons ci ratio: 8.257621e-02	ci left: 1.762516e-01	ci right 1.915330e-01	k: 1838	n:10000
KS ci ratio: 3.310124e-02	ci left: 5.739652e-01	ci right 5.933860e-01	k: 5837	n:10000
TTPA   10000 perm   2 sec   (6285 perm/sec)   p_kst 5.837000e-01   p_cons 1.838000e-01   p_joint 4.543000e-01

Outputting figure to mutsig2_images.part000000000184/TTPA.3_857_10000_0.5837_0.1838_0.4543.png
                gene_name: TTPA
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 53 percent done.
TTPAL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.210077e-02	ci left: 7.502904e-01	ci right 7.671586e-01	k: 7588	n:10000
KS ci ratio: 1.011880e-02	ci left: 9.326804e-01	ci right 9.422628e-01	k: 9376	n:10000
TTPAL   10000 perm   2 sec   (6319 perm/sec)   p_kst 9.376000e-01   p_cons 7.588000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TTPAL.3_1045_10000_0.9376_0.7588_1.png
                gene_name: TTPAL
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
TTR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.165621e-01	ci left: 9.564778e-02	ci right 1.075854e-01	k: 1015	n:10000
Cons ci ratio: 2.089368e-01	ci left: 3.043932e-02	ci right 3.763545e-02	k: 339	n:10000
KS ci ratio: 9.465171e-02	ci left: 1.394271e-01	ci right 1.533796e-01	k: 1463	n:10000
TTR   10000 perm   1 sec   (6684 perm/sec)   p_kst 1.463000e-01   p_cons 3.390000e-02   p_joint 1.015000e-01

Joint ci ratio: 9.980974e-02	ci left: 6.801542e-02	ci right 7.520972e-02	k: 1431	n:20000
Cons ci ratio: 1.444767e-01	ci left: 3.292999e-02	ci right 3.810619e-02	k: 709	n:20000
KS ci ratio: 6.730742e-02	ci left: 1.400978e-01	ci right 1.499057e-01	k: 2899	n:20000
TTR   20000 perm   3 sec   (5954 perm/sec)   p_kst 1.449500e-01   p_cons 3.545000e-02   p_joint 7.155000e-02

Joint ci ratio: 8.989847e-02	ci left: 5.691449e-02	ci right 6.230453e-02	k: 1787	n:30000
Cons ci ratio: 1.191894e-01	ci left: 3.272222e-02	ci right 3.690183e-02	k: 1043	n:30000
KS ci ratio: 5.539671e-02	ci left: 1.390567e-01	ci right 1.470126e-01	k: 4290	n:30000
TTR   30000 perm   5 sec   (5670 perm/sec)   p_kst 1.430000e-01   p_cons 3.476667e-02   p_joint 5.956667e-02

Joint ci ratio: 7.401704e-02	ci left: 6.309457e-02	ci right 6.796873e-02	k: 2620	n:40000
Cons ci ratio: 1.013869e-01	ci left: 3.419564e-02	ci right 3.787211e-02	k: 1440	n:40000
KS ci ratio: 4.783048e-02	ci left: 1.403253e-01	ci right 1.472265e-01	k: 5750	n:40000
TTR   40000 perm   7 sec   (5478 perm/sec)   p_kst 1.437500e-01   p_cons 3.600000e-02   p_joint 6.550000e-02

Joint ci ratio: 6.248909e-02	ci left: 7.067555e-02	ci right 7.525418e-02	k: 3647	n:50000
Cons ci ratio: 9.024903e-02	ci left: 3.471669e-02	ci right 3.801742e-02	k: 1817	n:50000
KS ci ratio: 4.304971e-02	ci left: 1.391694e-01	ci right 1.453122e-01	k: 7111	n:50000
TTR   50000 perm   9 sec   (5333 perm/sec)   p_kst 1.422200e-01   p_cons 3.634000e-02   p_joint 7.294000e-02

Outputting figure to mutsig2_images.part000000000184/TTR.3_460_50000_0.14222_0.03634_0.07294.png
                gene_name: TTR
               theta_stop: 0.090 
                    nperm: 50000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.038 
                  p_joint: 0.073 
     ci_joint_bounds_left: 0.071 
    ci_joint_bounds_right: 0.075 

Current progress: 56 percent done.
TTYH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.637301e-02	ci left: 2.499404e-01	ci right 2.672005e-01	k: 2585	n:10000
Cons ci ratio: 6.213439e-02	ci left: 2.757699e-01	ci right 2.935557e-01	k: 2846	n:10000
KS ci ratio: 8.609581e-02	ci left: 1.642567e-01	ci right 1.791350e-01	k: 1716	n:10000
TTYH1   10000 perm   2 sec   (6187 perm/sec)   p_kst 1.716000e-01   p_cons 2.846000e-01   p_joint 2.585000e-01

Outputting figure to mutsig2_images.part000000000184/TTYH1.3_1485_10000_0.1716_0.2846_0.2585.png
                gene_name: TTYH1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 57 percent done.
TUBA3D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.952407e-02	ci left: 2.934065e-01	ci right 3.115087e-01	k: 3024	n:10000
Cons ci ratio: 6.026393e-03	ci left: 9.738693e-01	ci right 9.798485e-01	k: 9770	n:10000
KS ci ratio: 6.597726e-02	ci left: 2.522150e-01	ci right 2.695245e-01	k: 2608	n:10000
TUBA3D   10000 perm   2 sec   (6576 perm/sec)   p_kst 2.608000e-01   p_cons 9.770000e-01   p_joint 3.024000e-01

Outputting figure to mutsig2_images.part000000000184/TUBA3D.3_1373_10000_0.2608_0.977_0.3024.png
                gene_name: TUBA3D
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 59 percent done.
TUBA4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.014424e-02	ci left: 7.829981e-01	ci right 7.990320e-01	k: 7911	n:10000
Cons ci ratio: 3.230402e-02	ci left: 5.858039e-01	ci right 6.051404e-01	k: 5955	n:10000
KS ci ratio: 3.393915e-02	ci left: 5.617312e-01	ci right 5.812271e-01	k: 5715	n:10000
TUBA4A   10000 perm   2 sec   (6239 perm/sec)   p_kst 5.715000e-01   p_cons 5.955000e-01   p_joint 7.911000e-01

Outputting figure to mutsig2_images.part000000000184/TUBA4A.3_1363_10000_0.5715_0.5955_0.7911.png
                gene_name: TUBA4A
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 60 percent done.
TUBB2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.364913e-01	ci left: 6.259350e-03	ci right 9.836166e-03	k: 79	n:10000
Cons ci ratio: 4.529048e-02	ci left: 4.184738e-01	ci right 4.379680e-01	k: 4282	n:10000
KS ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
TUBB2A   10000 perm   2 sec   (6169 perm/sec)   p_kst 3.900000e-03   p_cons 4.282000e-01   p_joint 7.900000e-03

Joint ci ratio: 2.273197e-01	ci left: 1.298353e-02	ci right 1.635973e-02	k: 292	n:20000
Cons ci ratio: 3.233075e-02	ci left: 4.167384e-01	ci right 4.304838e-01	k: 8472	n:20000
KS ci ratio: 4.193426e-01	ci left: 3.440841e-03	ci right 5.307780e-03	k: 86	n:20000
TUBB2A   20000 perm   4 sec   (5532 perm/sec)   p_kst 4.300000e-03   p_cons 4.236000e-01   p_joint 1.460000e-02

Joint ci ratio: 2.971666e-01	ci left: 4.910451e-03	ci right 6.654022e-03	k: 172	n:30000
Cons ci ratio: 2.650714e-02	ci left: 4.160032e-01	ci right 4.272120e-01	k: 12648	n:30000
KS ci ratio: 3.648346e-01	ci left: 3.135523e-03	ci right 4.563214e-03	k: 114	n:30000
TUBB2A   30000 perm   6 sec   (5280 perm/sec)   p_kst 3.800000e-03   p_cons 4.216000e-01   p_joint 5.733333e-03

Joint ci ratio: 2.165547e-01	ci left: 7.244952e-03	ci right 9.027564e-03	k: 324	n:40000
Cons ci ratio: 2.298919e-02	ci left: 4.160552e-01	ci right 4.257563e-01	k: 16836	n:40000
KS ci ratio: 3.112381e-01	ci left: 3.335997e-03	ci right 4.587710e-03	k: 157	n:40000
TUBB2A   40000 perm   8 sec   (5116 perm/sec)   p_kst 3.925000e-03   p_cons 4.209000e-01   p_joint 8.100000e-03

Joint ci ratio: 2.201680e-01	ci left: 5.606360e-03	ci right 7.011884e-03	k: 314	n:50000
Cons ci ratio: 2.063082e-02	ci left: 4.149497e-01	ci right 4.236197e-01	k: 20964	n:50000
KS ci ratio: 2.876676e-01	ci left: 3.168245e-03	ci right 4.250634e-03	k: 184	n:50000
TUBB2A   50000 perm   10 sec   (4982 perm/sec)   p_kst 3.680000e-03   p_cons 4.192800e-01   p_joint 6.280000e-03

Joint ci ratio: 1.868334e-01	ci left: 6.602648e-03	ci right 7.978990e-03	k: 436	n:60000
Cons ci ratio: 1.887328e-02	ci left: 4.142988e-01	ci right 4.222091e-01	k: 25095	n:60000
KS ci ratio: 2.662395e-01	ci left: 3.121028e-03	ci right 4.094627e-03	k: 215	n:60000
TUBB2A   60000 perm   12 sec   (4877 perm/sec)   p_kst 3.583333e-03   p_cons 4.182500e-01   p_joint 7.266667e-03

Joint ci ratio: 1.244682e-01	ci left: 1.310114e-02	ci right 1.485377e-02	k: 977	n:70000
Cons ci ratio: 1.747872e-02	ci left: 4.144424e-01	ci right 4.217644e-01	k: 29267	n:70000
KS ci ratio: 2.120734e-01	ci left: 4.342053e-03	ci right 5.385356e-03	k: 339	n:70000
TUBB2A   70000 perm   15 sec   (4781 perm/sec)   p_kst 4.842857e-03   p_cons 4.181000e-01   p_joint 1.395714e-02

Joint ci ratio: 1.516071e-01	ci left: 7.658889e-03	ci right 8.927158e-03	k: 662	n:80000
Cons ci ratio: 1.636041e-02	ci left: 4.143667e-01	ci right 4.212143e-01	k: 33423	n:80000
KS ci ratio: 1.992992e-01	ci left: 4.332844e-03	ci right 5.303603e-03	k: 384	n:80000
TUBB2A   80000 perm   17 sec   (4684 perm/sec)   p_kst 4.800000e-03   p_cons 4.177875e-01   p_joint 8.275000e-03

Joint ci ratio: 1.428281e-01	ci left: 7.706889e-03	ci right 8.902906e-03	k: 746	n:90000
Cons ci ratio: 1.541382e-02	ci left: 4.149079e-01	ci right 4.213640e-01	k: 37632	n:90000
KS ci ratio: 1.855745e-01	ci left: 4.475453e-03	ci right 5.401344e-03	k: 443	n:90000
TUBB2A   90000 perm   20 sec   (4592 perm/sec)   p_kst 4.922222e-03   p_cons 4.181333e-01   p_joint 8.288889e-03

Joint ci ratio: 1.060853e-01	ci left: 1.275492e-02	ci right 1.419350e-02	k: 1346	n:100000
Cons ci ratio: 1.462146e-02	ci left: 4.151202e-01	ci right 4.212445e-01	k: 41818	n:100000
KS ci ratio: 1.784919e-01	ci left: 4.371485e-03	ci right 5.237621e-03	k: 479	n:100000
TUBB2A   100000 perm   22 sec   (4498 perm/sec)   p_kst 4.790000e-03   p_cons 4.181800e-01   p_joint 1.346000e-02

Joint ci ratio: 1.297675e-01	ci left: 7.693118e-03	ci right 8.769416e-03	k: 904	n:110000
Cons ci ratio: 1.394463e-02	ci left: 4.151374e-01	ci right 4.209760e-01	k: 45986	n:110000
KS ci ratio: 1.698625e-01	ci left: 4.408823e-03	ci right 5.235800e-03	k: 529	n:110000
TUBB2A   110000 perm   25 sec   (4421 perm/sec)   p_kst 4.809091e-03   p_cons 4.180545e-01   p_joint 8.218182e-03

Joint ci ratio: 9.658218e-02	ci left: 1.288721e-02	ci right 1.420312e-02	k: 1624	n:120000
Cons ci ratio: 1.335546e-02	ci left: 4.150990e-01	ci right 4.206883e-01	k: 50147	n:120000
KS ci ratio: 1.639442e-01	ci left: 4.352837e-03	ci right 5.138058e-03	k: 568	n:120000
TUBB2A   120000 perm   28 sec   (4347 perm/sec)   p_kst 4.733333e-03   p_cons 4.178917e-01   p_joint 1.353333e-02

Joint ci ratio: 8.778253e-02	ci left: 1.444407e-02	ci right 1.577769e-02	k: 1963	n:130000
Cons ci ratio: 1.283902e-02	ci left: 4.149249e-01	ci right 4.202942e-01	k: 54289	n:130000
KS ci ratio: 1.582125e-01	ci left: 4.328055e-03	ci right 5.078917e-03	k: 610	n:130000
TUBB2A   130000 perm   30 sec   (4276 perm/sec)   p_kst 4.692308e-03   p_cons 4.176077e-01   p_joint 1.510000e-02

Joint ci ratio: 8.469265e-02	ci left: 1.443271e-02	ci right 1.571606e-02	k: 2109	n:140000
Cons ci ratio: 1.238692e-02	ci left: 4.144368e-01	ci right 4.196095e-01	k: 58383	n:140000
KS ci ratio: 1.531606e-01	ci left: 4.300352e-03	ci right 5.020400e-03	k: 651	n:140000
TUBB2A   140000 perm   33 sec   (4208 perm/sec)   p_kst 4.650000e-03   p_cons 4.170214e-01   p_joint 1.506429e-02

Joint ci ratio: 8.205548e-02	ci left: 1.437133e-02	ci right 1.560752e-02	k: 2247	n:150000
Cons ci ratio: 1.196400e-02	ci left: 4.146430e-01	ci right 4.196402e-01	k: 62571	n:150000
KS ci ratio: 1.482416e-01	ci left: 4.295935e-03	ci right 4.990093e-03	k: 695	n:150000
TUBB2A   150000 perm   36 sec   (4141 perm/sec)   p_kst 4.633333e-03   p_cons 4.171400e-01   p_joint 1.498000e-02

Joint ci ratio: 7.946447e-02	ci left: 1.438557e-02	ci right 1.558210e-02	k: 2396	n:160000
Cons ci ratio: 1.158237e-02	ci left: 4.147948e-01	ci right 4.196332e-01	k: 66754	n:160000
KS ci ratio: 1.436705e-01	ci left: 4.298419e-03	ci right 4.969725e-03	k: 740	n:160000
TUBB2A   160000 perm   39 sec   (4077 perm/sec)   p_kst 4.625000e-03   p_cons 4.172125e-01   p_joint 1.497500e-02

Joint ci ratio: 7.826721e-02	ci left: 1.397172e-02	ci right 1.511551e-02	k: 2471	n:170000
Cons ci ratio: 1.125345e-02	ci left: 4.141374e-01	ci right 4.188301e-01	k: 70802	n:170000
KS ci ratio: 1.394978e-01	ci left: 4.300901e-03	ci right 4.951464e-03	k: 785	n:170000
TUBB2A   170000 perm   42 sec   (4017 perm/sec)   p_kst 4.617647e-03   p_cons 4.164824e-01   p_joint 1.453529e-02

Joint ci ratio: 8.888916e-02	ci left: 1.021352e-02	ci right 1.116901e-02	k: 1923	n:180000
Cons ci ratio: 1.094688e-02	ci left: 4.137382e-01	ci right 4.182978e-01	k: 74883	n:180000
KS ci ratio: 1.354233e-01	ci left: 4.319462e-03	ci right 4.952211e-03	k: 833	n:180000
TUBB2A   180000 perm   45 sec   (3958 perm/sec)   p_kst 4.627778e-03   p_cons 4.160167e-01   p_joint 1.068333e-02

Joint ci ratio: 9.319256e-02	ci left: 8.796138e-03	ci right 9.661040e-03	k: 1752	n:190000
Cons ci ratio: 1.064524e-02	ci left: 4.142399e-01	ci right 4.186784e-01	k: 79127	n:190000
KS ci ratio: 1.311643e-01	ci left: 4.371951e-03	ci right 4.990679e-03	k: 888	n:190000
TUBB2A   190000 perm   49 sec   (3902 perm/sec)   p_kst 4.673684e-03   p_cons 4.164579e-01   p_joint 9.221053e-03

Joint ci ratio: 9.044442e-02	ci left: 8.883950e-03	ci right 9.730364e-03	k: 1860	n:200000
Cons ci ratio: 1.038484e-02	ci left: 4.138685e-01	ci right 4.181939e-01	k: 83206	n:200000
KS ci ratio: 1.272834e-01	ci left: 4.419472e-03	ci right 5.025021e-03	k: 943	n:200000
TUBB2A   200000 perm   52 sec   (3840 perm/sec)   p_kst 4.715000e-03   p_cons 4.160300e-01   p_joint 9.300000e-03

Joint ci ratio: 8.217830e-02	ci left: 1.027834e-02	ci right 1.116382e-02	k: 2250	n:210000
Cons ci ratio: 1.013778e-02	ci left: 4.137670e-01	ci right 4.179877e-01	k: 87334	n:210000
KS ci ratio: 1.239148e-01	ci left: 4.448864e-03	ci right 5.041124e-03	k: 995	n:210000
TUBB2A   210000 perm   56 sec   (3783 perm/sec)   p_kst 4.738095e-03   p_cons 4.158762e-01   p_joint 1.071429e-02

Joint ci ratio: 8.020626e-02	ci left: 1.030990e-02	ci right 1.117579e-02	k: 2362	n:220000
Cons ci ratio: 9.898013e-03	ci left: 4.141436e-01	ci right 4.182677e-01	k: 91565	n:220000
KS ci ratio: 1.212661e-01	ci left: 4.440509e-03	ci right 5.018114e-03	k: 1039	n:220000
TUBB2A   220000 perm   59 sec   (3728 perm/sec)   p_kst 4.722727e-03   p_cons 4.162045e-01   p_joint 1.073636e-02

Joint ci ratio: 7.849805e-02	ci left: 1.030484e-02	ci right 1.115103e-02	k: 2466	n:230000
Cons ci ratio: 9.684700e-03	ci left: 4.139758e-01	ci right 4.180089e-01	k: 95678	n:230000
KS ci ratio: 1.187804e-01	ci left: 4.433003e-03	ci right 4.996981e-03	k: 1083	n:230000
TUBB2A   230000 perm   63 sec   (3674 perm/sec)   p_kst 4.708696e-03   p_cons 4.159913e-01   p_joint 1.072174e-02

Joint ci ratio: 8.266132e-02	ci left: 8.899424e-03	ci right 9.670830e-03	k: 2227	n:240000
Cons ci ratio: 9.475990e-03	ci left: 4.142643e-01	ci right 4.182127e-01	k: 99897	n:240000
KS ci ratio: 1.160288e-01	ci left: 4.458602e-03	ci right 5.011797e-03	k: 1135	n:240000
TUBB2A   240000 perm   66 sec   (3622 perm/sec)   p_kst 4.729167e-03   p_cons 4.162375e-01   p_joint 9.279167e-03

Joint ci ratio: 8.605331e-02	ci left: 7.877606e-03	ci right 8.589866e-03	k: 2057	n:250000
Cons ci ratio: 9.284186e-03	ci left: 4.143227e-01	ci right 4.181912e-01	k: 104064	n:250000
KS ci ratio: 1.138943e-01	ci left: 4.447310e-03	ci right 4.988270e-03	k: 1178	n:250000
TUBB2A   250000 perm   70 sec   (3559 perm/sec)   p_kst 4.712000e-03   p_cons 4.162560e-01   p_joint 8.228000e-03

Joint ci ratio: 8.442837e-02	ci left: 7.875754e-03	ci right 8.573737e-03	k: 2137	n:260000
Cons ci ratio: 9.102639e-03	ci left: 4.144273e-01	ci right 4.182207e-01	k: 108244	n:260000
KS ci ratio: 1.120116e-01	ci left: 4.425757e-03	ci right 4.954608e-03	k: 1218	n:260000
TUBB2A   260000 perm   74 sec   (3510 perm/sec)   p_kst 4.684615e-03   p_cons 4.163231e-01   p_joint 8.219231e-03

Joint ci ratio: 7.822577e-02	ci left: 8.854195e-03	ci right 9.578621e-03	k: 2487	n:270000
Cons ci ratio: 8.934202e-03	ci left: 4.143694e-01	ci right 4.180917e-01	k: 112382	n:270000
KS ci ratio: 1.096519e-01	ci left: 4.452698e-03	ci right 4.972836e-03	k: 1271	n:270000
TUBB2A   270000 perm   78 sec   (3464 perm/sec)   p_kst 4.707407e-03   p_cons 4.162296e-01   p_joint 9.211111e-03

Joint ci ratio: 8.156216e-02	ci left: 7.848285e-03	ci right 8.519097e-03	k: 2290	n:280000
Cons ci ratio: 8.771686e-03	ci left: 4.144875e-01	ci right 4.181428e-01	k: 116568	n:280000
KS ci ratio: 1.075578e-01	ci left: 4.467396e-03	ci right 4.978653e-03	k: 1321	n:280000
TUBB2A   280000 perm   82 sec   (3418 perm/sec)   p_kst 4.717857e-03   p_cons 4.163143e-01   p_joint 8.178571e-03

Joint ci ratio: 8.034562e-02	ci left: 7.814142e-03	ci right 8.471607e-03	k: 2360	n:290000
Cons ci ratio: 8.616321e-03	ci left: 4.146773e-01	ci right 4.182692e-01	k: 120777	n:290000
KS ci ratio: 1.058899e-01	ci left: 4.454307e-03	ci right 4.955670e-03	k: 1363	n:290000
TUBB2A   290000 perm   86 sec   (3374 perm/sec)   p_kst 4.700000e-03   p_cons 4.164724e-01   p_joint 8.137931e-03

Joint ci ratio: 7.866164e-02	ci left: 7.886922e-03	ci right 8.535965e-03	k: 2462	n:300000
Cons ci ratio: 8.472356e-03	ci left: 4.146585e-01	ci right 4.181898e-01	k: 124927	n:300000
KS ci ratio: 1.038161e-01	ci left: 4.484360e-03	ci right 4.978616e-03	k: 1418	n:300000
TUBB2A   300000 perm   90 sec   (3332 perm/sec)   p_kst 4.726667e-03   p_cons 4.164233e-01   p_joint 8.206667e-03

Joint ci ratio: 7.750696e-02	ci left: 7.866550e-03	ci right 8.503986e-03	k: 2536	n:310000
Cons ci ratio: 8.329457e-03	ci left: 4.149862e-01	ci right 4.184605e-01	k: 129184	n:310000
KS ci ratio: 1.021734e-01	ci left: 4.484267e-03	ci right 4.970224e-03	k: 1464	n:310000
TUBB2A   310000 perm   94 sec   (3283 perm/sec)   p_kst 4.722581e-03   p_cons 4.167226e-01   p_joint 8.180645e-03

Joint ci ratio: 7.602098e-02	ci left: 7.927231e-03	ci right 8.556723e-03	k: 2636	n:320000
Cons ci ratio: 8.195181e-03	ci left: 4.151972e-01	ci right 4.186168e-01	k: 133410	n:320000
KS ci ratio: 1.000425e-01	ci left: 4.536037e-03	ci right 5.016749e-03	k: 1527	n:320000
TUBB2A   320000 perm   99 sec   (3242 perm/sec)   p_kst 4.771875e-03   p_cons 4.169062e-01   p_joint 8.237500e-03

Joint ci ratio: 7.489371e-02	ci left: 7.924861e-03	ci right 8.544427e-03	k: 2716	n:330000
Cons ci ratio: 8.069206e-03	ci left: 4.152746e-01	ci right 4.186421e-01	k: 137596	n:330000
KS ci ratio: 9.850716e-02	ci left: 4.540425e-03	ci right 5.013791e-03	k: 1575	n:330000
TUBB2A   330000 perm   103 sec   (3202 perm/sec)   p_kst 4.772727e-03   p_cons 4.169576e-01   p_joint 8.230303e-03

Outputting figure to mutsig2_images.part000000000184/TUBB2A.3_1354_330000_0.0047727_0.41696_0.0082303.png
                gene_name: TUBB2A
               theta_stop: 0.099 
                    nperm: 330000 
                     p_ks: 0.0048 
        ci_ks_bounds_left: 0.0045 
       ci_ks_bounds_right: 0.0050 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.0082 
     ci_joint_bounds_left: 0.0079 
    ci_joint_bounds_right: 0.0085 

Current progress: 61 percent done.
TUBB2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.405044e-02	ci left: 1.409954e-01	ci right 1.550103e-01	k: 1479	n:10000
Cons ci ratio: 1.156770e-01	ci left: 9.701134e-02	ci right 1.090210e-01	k: 1029	n:10000
KS ci ratio: 8.555495e-02	ci left: 1.660256e-01	ci right 1.809651e-01	k: 1734	n:10000
TUBB2B   10000 perm   2 sec   (6121 perm/sec)   p_kst 1.734000e-01   p_cons 1.029000e-01   p_joint 1.479000e-01

Joint ci ratio: 6.474296e-02	ci left: 1.498618e-01	ci right 1.599388e-01	k: 3097	n:20000
Cons ci ratio: 8.197512e-02	ci left: 9.837857e-02	ci right 1.068374e-01	k: 2051	n:20000
KS ci ratio: 6.084774e-02	ci left: 1.665953e-01	ci right 1.771003e-01	k: 3436	n:20000
TUBB2B   20000 perm   4 sec   (5532 perm/sec)   p_kst 1.718000e-01   p_cons 1.025500e-01   p_joint 1.548500e-01

Outputting figure to mutsig2_images.part000000000184/TUBB2B.3_1354_20000_0.1718_0.10255_0.15485.png
                gene_name: TUBB2B
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 63 percent done.
TUBB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.592170e-02	ci left: 1.361934e-01	ci right 1.500152e-01	k: 1430	n:10000
Cons ci ratio: 5.673863e-02	ci left: 3.138374e-01	ci right 3.322658e-01	k: 3230	n:10000
KS ci ratio: 1.191234e-01	ci left: 9.185115e-02	ci right 1.035844e-01	k: 976	n:10000
TUBB4   10000 perm   2 sec   (6255 perm/sec)   p_kst 9.760000e-02   p_cons 3.230000e-01   p_joint 1.430000e-01

Joint ci ratio: 9.513196e-02	ci left: 7.451555e-02	ci right 8.200761e-02	k: 1564	n:20000
Cons ci ratio: 3.995125e-02	ci left: 3.184101e-01	ci right 3.314408e-01	k: 6498	n:20000
KS ci ratio: 8.532785e-02	ci left: 9.136270e-02	ci right 9.955535e-02	k: 1908	n:20000
TUBB4   20000 perm   4 sec   (5629 perm/sec)   p_kst 9.540000e-02   p_cons 3.249000e-01   p_joint 7.820000e-02

Outputting figure to mutsig2_images.part000000000184/TUBB4.3_1351_20000_0.0954_0.3249_0.0782.png
                gene_name: TUBB4
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.100 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.075 
    ci_joint_bounds_right: 0.082 

Current progress: 64 percent done.
TUBB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.244895e-02	ci left: 3.488943e-01	ci right 3.677882e-01	k: 3583	n:10000
Cons ci ratio: 4.431467e-02	ci left: 4.291426e-01	ci right 4.486930e-01	k: 4389	n:10000
KS ci ratio: 5.461592e-02	ci left: 3.306139e-01	ci right 3.492795e-01	k: 3399	n:10000
TUBB6   10000 perm   2 sec   (6261 perm/sec)   p_kst 3.399000e-01   p_cons 4.389000e-01   p_joint 3.583000e-01

Outputting figure to mutsig2_images.part000000000184/TUBB6.3_1357_10000_0.3399_0.4389_0.3583.png
                gene_name: TUBB6
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 66 percent done.
TUBB8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.600800e-02	ci left: 5.324742e-01	ci right 5.521012e-01	k: 5423	n:10000
Cons ci ratio: 5.570431e-02	ci left: 3.218765e-01	ci right 3.404219e-01	k: 3311	n:10000
KS ci ratio: 1.928796e-02	ci left: 7.971977e-01	ci right 8.128242e-01	k: 8051	n:10000
TUBB8   10000 perm   2 sec   (6661 perm/sec)   p_kst 8.051000e-01   p_cons 3.311000e-01   p_joint 5.423000e-01

Outputting figure to mutsig2_images.part000000000184/TUBB8.3_1351_10000_0.8051_0.3311_0.5423.png
                gene_name: TUBB8
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 67 percent done.
TUBD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.931779e-02	ci left: 1.542387e-01	ci right 1.687591e-01	k: 1614	n:10000
Cons ci ratio: 1.100976e-01	ci left: 1.062728e-01	ci right 1.187539e-01	k: 1124	n:10000
KS ci ratio: 8.704611e-02	ci left: 1.612110e-01	ci right 1.759826e-01	k: 1685	n:10000
TUBD1   10000 perm   2 sec   (6145 perm/sec)   p_kst 1.685000e-01   p_cons 1.124000e-01   p_joint 1.614000e-01

Joint ci ratio: 7.455001e-02	ci left: 1.169040e-01	ci right 1.260064e-01	k: 2428	n:20000
Cons ci ratio: 7.683620e-02	ci left: 1.107082e-01	ci right 1.196041e-01	k: 2302	n:20000
KS ci ratio: 6.163978e-02	ci left: 1.629902e-01	ci right 1.734064e-01	k: 3363	n:20000
TUBD1   20000 perm   4 sec   (5514 perm/sec)   p_kst 1.681500e-01   p_cons 1.151000e-01   p_joint 1.214000e-01

Outputting figure to mutsig2_images.part000000000184/TUBD1.3_1394_20000_0.16815_0.1151_0.1214.png
                gene_name: TUBD1
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 69 percent done.
TUBG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.021896e-02	ci left: 6.176367e-01	ci right 6.366892e-01	k: 6272	n:10000
Cons ci ratio: 7.138054e-02	ci left: 2.233609e-01	ci right 2.399957e-01	k: 2316	n:10000
KS ci ratio: 3.453175e-02	ci left: 5.532111e-01	ci right 5.727522e-01	k: 5630	n:10000
TUBG2   10000 perm   2 sec   (5953 perm/sec)   p_kst 5.630000e-01   p_cons 2.316000e-01   p_joint 6.272000e-01

Outputting figure to mutsig2_images.part000000000184/TUBG2.3_1400_10000_0.563_0.2316_0.6272.png
                gene_name: TUBG2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 70 percent done.
TUBGCP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.797479e-02	ci left: 5.059517e-01	ci right 5.256391e-01	k: 5158	n:10000
Cons ci ratio: 5.315188e-02	ci left: 3.428323e-01	ci right 3.616539e-01	k: 3522	n:10000
KS ci ratio: 5.227834e-02	ci left: 3.503853e-01	ci right 3.692964e-01	k: 3598	n:10000
TUBGCP2   10000 perm   2 sec   (5285 perm/sec)   p_kst 3.598000e-01   p_cons 3.522000e-01   p_joint 5.158000e-01

Outputting figure to mutsig2_images.part000000000184/TUBGCP2.3_2777_10000_0.3598_0.3522_0.5158.png
                gene_name: TUBGCP2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 71 percent done.
TUFT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.117193e-02	ci left: 4.655704e-01	ci right 4.852439e-01	k: 4754	n:10000
Cons ci ratio: 4.425176e-02	ci left: 4.298407e-01	ci right 4.493945e-01	k: 4396	n:10000
KS ci ratio: 5.863342e-02	ci left: 2.997517e-01	ci right 3.179597e-01	k: 3088	n:10000
TUFT1   10000 perm   2 sec   (6301 perm/sec)   p_kst 3.088000e-01   p_cons 4.396000e-01   p_joint 4.754000e-01

Outputting figure to mutsig2_images.part000000000184/TUFT1.3_1225_10000_0.3088_0.4396_0.4754.png
                gene_name: TUFT1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 73 percent done.
TUT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.307401e-02	ci left: 5.743665e-01	ci right 5.937845e-01	k: 5841	n:10000
Cons ci ratio: 2.373042e-02	ci left: 7.230002e-01	ci right 7.404646e-01	k: 7318	n:10000
KS ci ratio: 4.751436e-02	ci left: 3.952579e-01	ci right 4.145975e-01	k: 4049	n:10000
TUT1   10000 perm   2 sec   (5566 perm/sec)   p_kst 4.049000e-01   p_cons 7.318000e-01   p_joint 5.841000e-01

Outputting figure to mutsig2_images.part000000000184/TUT1.3_2775_10000_0.4049_0.7318_0.5841.png
                gene_name: TUT1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 74 percent done.
TWSG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.127486e-02	ci left: 6.013635e-01	ci right 6.205718e-01	k: 6110	n:10000
Cons ci ratio: 3.212332e-02	ci left: 5.885136e-01	ci right 6.078292e-01	k: 5982	n:10000
KS ci ratio: 6.894319e-02	ci left: 2.358052e-01	ci right 2.527440e-01	k: 2442	n:10000
TWSG1   10000 perm   2 sec   (6648 perm/sec)   p_kst 2.442000e-01   p_cons 5.982000e-01   p_joint 6.110000e-01

Outputting figure to mutsig2_images.part000000000184/TWSG1.3_688_10000_0.2442_0.5982_0.611.png
                gene_name: TWSG1
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 76 percent done.
TTC38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.339733e-02	ci left: 3.407457e-01	ci right 3.595416e-01	k: 3501	n:10000
Cons ci ratio: 2.903464e-01	ci left: 1.529963e-02	ci right 2.058652e-02	k: 178	n:10000
KS ci ratio: 9.695188e-02	ci left: 1.336465e-01	ci right 1.473637e-01	k: 1404	n:10000
TTC38   10000 perm   2 sec   (6656 perm/sec)   p_kst 1.404000e-01   p_cons 1.780000e-02   p_joint 3.501000e-01

Joint ci ratio: 3.715150e-02	ci left: 3.509038e-01	ci right 3.642377e-01	k: 7151	n:20000
Cons ci ratio: 2.201831e-01	ci left: 1.388097e-02	ci right 1.736192e-02	k: 311	n:20000
KS ci ratio: 6.904321e-02	ci left: 1.339869e-01	ci right 1.436184e-01	k: 2775	n:20000
TTC38   20000 perm   3 sec   (5926 perm/sec)   p_kst 1.387500e-01   p_cons 1.555000e-02   p_joint 3.575500e-01

Joint ci ratio: 3.030985e-02	ci left: 3.525059e-01	ci right 3.633883e-01	k: 10738	n:30000
Cons ci ratio: 1.823706e-01	ci left: 1.378230e-02	ci right 1.657941e-02	k: 454	n:30000
KS ci ratio: 5.665858e-02	ci left: 1.336875e-01	ci right 1.415161e-01	k: 4127	n:30000
TTC38   30000 perm   5 sec   (5648 perm/sec)   p_kst 1.375667e-01   p_cons 1.513333e-02   p_joint 3.579333e-01

Joint ci ratio: 2.615182e-02	ci left: 3.549449e-01	ci right 3.643755e-01	k: 14386	n:40000
Cons ci ratio: 1.588266e-01	ci left: 1.380760e-02	ci right 1.621357e-02	k: 599	n:40000
KS ci ratio: 4.863839e-02	ci left: 1.362916e-01	ci right 1.431108e-01	k: 5587	n:40000
TTC38   40000 perm   7 sec   (5468 perm/sec)   p_kst 1.396750e-01   p_cons 1.497500e-02   p_joint 3.596500e-01

Joint ci ratio: 2.342622e-02	ci left: 3.547536e-01	ci right 3.631827e-01	k: 17948	n:50000
Cons ci ratio: 1.435233e-01	ci left: 1.364407e-02	ci right 1.577282e-02	k: 734	n:50000
KS ci ratio: 4.338092e-02	ci left: 1.373263e-01	ci right 1.434356e-01	k: 7018	n:50000
TTC38   50000 perm   9 sec   (5310 perm/sec)   p_kst 1.403600e-01   p_cons 1.468000e-02   p_joint 3.589600e-01

Joint ci ratio: 1.817876e-02	ci left: 4.326263e-01	ci right 4.405798e-01	k: 26196	n:60000
Cons ci ratio: 1.316256e-01	ci left: 1.360708e-02	ci right 1.554029e-02	k: 873	n:60000
KS ci ratio: 3.960068e-02	ci left: 1.375963e-01	ci right 1.431719e-01	k: 8422	n:60000
TTC38   60000 perm   12 sec   (5172 perm/sec)   p_kst 1.403667e-01   p_cons 1.455000e-02   p_joint 4.366000e-01

Joint ci ratio: 1.682789e-02	ci left: 4.329928e-01	ci right 4.403553e-01	k: 30567	n:70000
Cons ci ratio: 1.211206e-01	ci left: 1.384919e-02	ci right 1.564850e-02	k: 1031	n:70000
KS ci ratio: 3.678917e-02	ci left: 1.369837e-01	ci right 1.421319e-01	k: 9768	n:70000
TTC38   70000 perm   14 sec   (5046 perm/sec)   p_kst 1.395429e-01   p_cons 1.472857e-02   p_joint 4.366714e-01

Joint ci ratio: 1.260516e-02	ci left: 5.438178e-01	ci right 5.507287e-01	k: 43782	n:80000
Cons ci ratio: 1.138592e-01	ci left: 1.376808e-02	ci right 1.544240e-02	k: 1167	n:80000
KS ci ratio: 3.441058e-02	ci left: 1.371680e-01	ci right 1.419831e-01	k: 11165	n:80000
TTC38   80000 perm   16 sec   (4935 perm/sec)   p_kst 1.395625e-01   p_cons 1.458750e-02   p_joint 5.472750e-01

Joint ci ratio: 1.187622e-02	ci left: 5.443523e-01	ci right 5.508669e-01	k: 49285	n:90000
Cons ci ratio: 1.073062e-01	ci left: 1.382649e-02	ci right 1.540502e-02	k: 1314	n:90000
KS ci ratio: 3.239281e-02	ci left: 1.376729e-01	ci right 1.422170e-01	k: 12594	n:90000
TTC38   90000 perm   19 sec   (4833 perm/sec)   p_kst 1.399333e-01   p_cons 1.460000e-02   p_joint 5.476111e-01

Joint ci ratio: 1.126636e-02	ci left: 5.445388e-01	ci right 5.507185e-01	k: 54763	n:100000
Cons ci ratio: 1.026989e-01	ci left: 1.362200e-02	ci right 1.510637e-02	k: 1435	n:100000
KS ci ratio: 3.074898e-02	ci left: 1.376462e-01	ci right 1.419547e-01	k: 13979	n:100000
TTC38   100000 perm   21 sec   (4744 perm/sec)   p_kst 1.397900e-01   p_cons 1.435000e-02   p_joint 5.476300e-01

Joint ci ratio: 1.075179e-02	ci left: 5.442345e-01	ci right 5.501267e-01	k: 60190	n:110000
Cons ci ratio: 9.725340e-02	ci left: 1.384622e-02	ci right 1.527045e-02	k: 1600	n:110000
KS ci ratio: 2.935686e-02	ci left: 1.374304e-01	ci right 1.415341e-01	k: 15342	n:110000
TTC38   110000 perm   24 sec   (4658 perm/sec)   p_kst 1.394727e-01   p_cons 1.454545e-02   p_joint 5.471818e-01

Outputting figure to mutsig2_images.part000000000184/TTC38.2_1466_110000_0.13947_0.014545_0.54718.png
                gene_name: TTC38
               theta_stop: 0.097 
                    nperm: 110000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.015 
      ci_cons_bounds_left: 0.014 
     ci_cons_bounds_right: 0.015 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 77 percent done.
TTC39A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.524022e-02	ci left: 6.978692e-01	ci right 7.158101e-01	k: 7069	n:10000
Cons ci ratio: 3.647465e-02	ci left: 5.260662e-01	ci right 5.457129e-01	k: 5359	n:10000
KS ci ratio: 6.964110e-02	ci left: 2.321499e-01	ci right 2.490015e-01	k: 2405	n:10000
TTC39A   10000 perm   2 sec   (5668 perm/sec)   p_kst 2.405000e-01   p_cons 5.359000e-01   p_joint 7.069000e-01

Outputting figure to mutsig2_images.part000000000184/TTC39A.2_1866_10000_0.2405_0.5359_0.7069.png
                gene_name: TTC39A
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 79 percent done.
TTC7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.955063e-02	ci left: 6.280896e-01	ci right 6.470302e-01	k: 6376	n:10000
KS ci ratio: 4.126282e-02	ci left: 4.644718e-01	ci right 4.841432e-01	k: 4743	n:10000
TTC7B   10000 perm   2 sec   (5909 perm/sec)   p_kst 4.743000e-01   p_cons 6.376000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TTC7B.2_2612_10000_0.4743_0.6376_1.png
                gene_name: TTC7B
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
TTC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.975368e-02	ci left: 7.894875e-01	ci right 8.053389e-01	k: 7975	n:10000
Cons ci ratio: 5.838717e-02	ci left: 3.015367e-01	ci right 3.197737e-01	k: 3106	n:10000
KS ci ratio: 9.083148e-02	ci left: 1.498222e-01	ci right 1.641783e-01	k: 1569	n:10000
TTC8   10000 perm   2 sec   (6406 perm/sec)   p_kst 1.569000e-01   p_cons 3.106000e-01   p_joint 7.975000e-01

Outputting figure to mutsig2_images.part000000000184/TTC8.2_1608_10000_0.1569_0.3106_0.7975.png
                gene_name: TTC8
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 81 percent done.
TTF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 7.032931e-03	ci left: 9.653082e-01	ci right 9.722151e-01	k: 9689	n:10000
KS ci ratio: 6.528325e-03	ci left: 9.697378e-01	ci right 9.761827e-01	k: 9731	n:10000
TTF1   10000 perm   2 sec   (5784 perm/sec)   p_kst 9.731000e-01   p_cons 9.689000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TTF1.2_2758_10000_0.9731_0.9689_1.png
                gene_name: TTF1
               theta_stop: 0.0070 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
TTLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.865692e-02	ci left: 3.839072e-01	ci right 4.031548e-01	k: 3935	n:10000
KS ci ratio: 2.337403e-02	ci left: 7.289600e-01	ci right 7.463014e-01	k: 7377	n:10000
TTLL1   10000 perm   2 sec   (6629 perm/sec)   p_kst 7.377000e-01   p_cons 3.935000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TTLL1.2_1308_10000_0.7377_0.3935_1.png
                gene_name: TTLL1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
TTLL11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.194893e-02	ci left: 1.785143e-01	ci right 1.938689e-01	k: 1861	n:10000
Cons ci ratio: 1.751436e-01	ci left: 4.350916e-02	ci right 5.195681e-02	k: 476	n:10000
KS ci ratio: 5.272375e-02	ci left: 3.465091e-01	ci right 3.653749e-01	k: 3559	n:10000
TTLL11   10000 perm   2 sec   (5957 perm/sec)   p_kst 3.559000e-01   p_cons 4.760000e-02   p_joint 1.861000e-01

Joint ci ratio: 6.436235e-02	ci left: 1.513911e-01	ci right 1.615090e-01	k: 3128	n:20000
Cons ci ratio: 1.202513e-01	ci left: 4.740861e-02	ci right 5.352292e-02	k: 1008	n:20000
KS ci ratio: 3.731377e-02	ci left: 3.489124e-01	ci right 3.622297e-01	k: 7111	n:20000
TTLL11   20000 perm   4 sec   (5346 perm/sec)   p_kst 3.555500e-01   p_cons 5.040000e-02   p_joint 1.564000e-01

Joint ci ratio: 4.626370e-02	ci left: 1.886135e-01	ci right 1.975794e-01	k: 5792	n:30000
Cons ci ratio: 9.745865e-02	ci left: 4.866769e-02	ci right 5.368635e-02	k: 1534	n:30000
KS ci ratio: 3.063344e-02	ci left: 3.476563e-01	ci right 3.585055e-01	k: 10592	n:30000
TTLL11   30000 perm   6 sec   (5109 perm/sec)   p_kst 3.530667e-01   p_cons 5.113333e-02   p_joint 1.930667e-01

Outputting figure to mutsig2_images.part000000000184/TTLL11.2_2517_30000_0.35307_0.051133_0.19307.png
                gene_name: TTLL11
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 86 percent done.
TTLL5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.353332e-01	ci left: 7.213925e-02	ci right 8.270848e-02	k: 773	n:10000
KS ci ratio: 1.936165e-02	ci left: 7.959800e-01	ci right 8.116426e-01	k: 8039	n:10000
TTLL5   10000 perm   2 sec   (5224 perm/sec)   p_kst 8.039000e-01   p_cons 7.730000e-02   p_joint 1

Joint ci ratio: 1.521549e-02	ci left: 7.625402e-01	ci right 7.742817e-01	k: 15369	n:20000
Cons ci ratio: 9.819427e-02	ci left: 7.016491e-02	ci right 7.745958e-02	k: 1475	n:20000
KS ci ratio: 1.366441e-02	ci left: 7.989346e-01	ci right 8.099767e-01	k: 16090	n:20000
TTLL5   20000 perm   4 sec   (4736 perm/sec)   p_kst 8.045000e-01   p_cons 7.375000e-02   p_joint 7.684500e-01

Outputting figure to mutsig2_images.part000000000184/TTLL5.2_3970_20000_0.8045_0.07375_0.76845.png
                gene_name: TTLL5
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 87 percent done.
TTYH3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.216596e-02	ci left: 9.064824e-01	ci right 9.176761e-01	k: 9122	n:10000
Cons ci ratio: 1.512887e-02	ci left: 8.636592e-01	ci right 8.769242e-01	k: 8704	n:10000
KS ci ratio: 1.103741e-01	ci left: 1.057850e-01	ci right 1.182420e-01	k: 1119	n:10000
TTYH3   10000 perm   2 sec   (6267 perm/sec)   p_kst 1.119000e-01   p_cons 8.704000e-01   p_joint 9.122000e-01

Joint ci ratio: 2.526382e-02	ci left: 5.392688e-01	ci right 5.531177e-01	k: 10924	n:20000
Cons ci ratio: 1.073939e-02	ci left: 8.647528e-01	ci right 8.741395e-01	k: 17390	n:20000
KS ci ratio: 7.752260e-02	ci left: 1.089387e-01	ci right 1.177741e-01	k: 2266	n:20000
TTYH3   20000 perm   4 sec   (5549 perm/sec)   p_kst 1.133000e-01   p_cons 8.695000e-01   p_joint 5.462000e-01

Outputting figure to mutsig2_images.part000000000184/TTYH3.2_1628_20000_0.1133_0.8695_0.5462.png
                gene_name: TTYH3
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.55 

Current progress: 89 percent done.
TUBA1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.739775e-03	ci left: 9.761027e-01	ci right 9.818135e-01	k: 9791	n:10000
Cons ci ratio: 1.983924e-02	ci left: 7.880677e-01	ci right 8.039595e-01	k: 7961	n:10000
KS ci ratio: 1.295412e-02	ci left: 8.955947e-01	ci right 9.073703e-01	k: 9016	n:10000
TUBA1B   10000 perm   2 sec   (6411 perm/sec)   p_kst 9.016000e-01   p_cons 7.961000e-01   p_joint 9.791000e-01

Outputting figure to mutsig2_images.part000000000184/TUBA1B.2_1372_10000_0.9016_0.7961_0.9791.png
                gene_name: TUBA1B
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 90 percent done.
TUBA1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.936549e-02	ci left: 6.310052e-01	ci right 6.499129e-01	k: 6405	n:10000
Cons ci ratio: 5.010390e-02	ci left: 3.700748e-01	ci right 3.891954e-01	k: 3796	n:10000
KS ci ratio: 3.886633e-02	ci left: 4.943505e-01	ci right 5.140471e-01	k: 5042	n:10000
TUBA1C   10000 perm   2 sec   (6293 perm/sec)   p_kst 5.042000e-01   p_cons 3.796000e-01   p_joint 6.405000e-01

Outputting figure to mutsig2_images.part000000000184/TUBA1C.2_1366_10000_0.5042_0.3796_0.6405.png
                gene_name: TUBA1C
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 91 percent done.
TUBA8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.297566e-02	ci left: 7.356292e-01	ci right 7.528283e-01	k: 7443	n:10000
Cons ci ratio: 4.406368e-02	ci left: 4.319352e-01	ci right 4.514988e-01	k: 4417	n:10000
KS ci ratio: 3.273486e-02	ci left: 5.793822e-01	ci right 5.987658e-01	k: 5891	n:10000
TUBA8   10000 perm   2 sec   (6499 perm/sec)   p_kst 5.891000e-01   p_cons 4.417000e-01   p_joint 7.443000e-01

Outputting figure to mutsig2_images.part000000000184/TUBA8.2_1370_10000_0.5891_0.4417_0.7443.png
                gene_name: TUBA8
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 93 percent done.
TUBB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.595323e-02	ci left: 4.113971e-01	ci right 4.308489e-01	k: 4211	n:10000
KS ci ratio: 6.493302e-02	ci left: 2.583481e-01	ci right 2.757878e-01	k: 2670	n:10000
TUBB1   10000 perm   2 sec   (6237 perm/sec)   p_kst 2.670000e-01   p_cons 4.211000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TUBB1.2_1372_10000_0.267_0.4211_1.png
                gene_name: TUBB1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
TUBB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.553173e-02	ci left: 4.158821e-01	ci right 4.353612e-01	k: 4256	n:10000
KS ci ratio: 1.174385e-02	ci left: 9.121411e-01	ci right 9.230142e-01	k: 9177	n:10000
TUBB3   10000 perm   2 sec   (6629 perm/sec)   p_kst 9.177000e-01   p_cons 4.256000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000184/TUBB3.2_1369_10000_0.9177_0.4256_1.png
                gene_name: TUBB3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
TUBB4Q
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.498298e-02	ci left: 3.276348e-01	ci right 3.462602e-01	k: 3369	n:10000
Cons ci ratio: 3.961964e-02	ci left: 4.847535e-01	ci right 5.044496e-01	k: 4946	n:10000
KS ci ratio: 6.757094e-02	ci left: 2.432172e-01	ci right 2.603276e-01	k: 2517	n:10000
TUBB4Q   10000 perm   2 sec   (6579 perm/sec)   p_kst 2.517000e-01   p_cons 4.946000e-01   p_joint 3.369000e-01

Outputting figure to mutsig2_images.part000000000184/TUBB4Q.2_1319_10000_0.2517_0.4946_0.3369.png
                gene_name: TUBB4Q
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 97 percent done.
TUSC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.236922e-02	ci left: 3.495901e-01	ci right 3.684921e-01	k: 3590	n:10000
Cons ci ratio: 6.371172e-02	ci left: 2.657701e-01	ci right 2.833614e-01	k: 2745	n:10000
KS ci ratio: 4.704442e-02	ci left: 4.000388e-01	ci right 4.194138e-01	k: 4097	n:10000
TUSC5   10000 perm   1 sec   (7187 perm/sec)   p_kst 4.097000e-01   p_cons 2.745000e-01   p_joint 3.590000e-01

Outputting figure to mutsig2_images.part000000000184/TUSC5.2_546_10000_0.4097_0.2745_0.359.png
                gene_name: TUSC5
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 99 percent done.
TWISTNB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.046689e-01	ci left: 1.165255e-01	ci right 1.294950e-01	k: 1229	n:10000
Cons ci ratio: 3.366971e-02	ci left: 5.656415e-01	ci right 5.851146e-01	k: 5754	n:10000
KS ci ratio: 1.696151e-01	ci left: 4.638557e-02	ci right 5.507852e-02	k: 506	n:10000
TWISTNB   10000 perm   1 sec   (6677 perm/sec)   p_kst 5.060000e-02   p_cons 5.754000e-01   p_joint 1.229000e-01

Joint ci ratio: 5.063061e-02	ci left: 2.247273e-01	ci right 2.364511e-01	k: 4611	n:20000
Cons ci ratio: 2.446136e-02	ci left: 5.552406e-01	ci right 5.690413e-01	k: 11243	n:20000
KS ci ratio: 1.176937e-01	ci left: 4.944921e-02	ci right 5.568168e-02	k: 1050	n:20000
TWISTNB   20000 perm   3 sec   (6010 perm/sec)   p_kst 5.250000e-02   p_cons 5.621500e-01   p_joint 2.305500e-01

Joint ci ratio: 4.675441e-02	ci left: 1.853761e-01	ci right 1.942841e-01	k: 5694	n:30000
Cons ci ratio: 1.999400e-02	ci left: 5.559961e-01	ci right 5.672586e-01	k: 16849	n:30000
KS ci ratio: 9.640418e-02	ci left: 4.970981e-02	ci right 5.477735e-02	k: 1566	n:30000
TWISTNB   30000 perm   5 sec   (5721 perm/sec)   p_kst 5.220000e-02   p_cons 5.616333e-01   p_joint 1.898000e-01

Outputting figure to mutsig2_images.part000000000184/TWISTNB.2_1033_30000_0.0522_0.56163_0.1898.png
                gene_name: TWISTNB
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.19 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000184
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 184 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1713>
Subject: Job 9894196: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1713>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000185> was used as the working directory.
Started at Sat Oct  6 00:34:21 2012
Results reported at Sat Oct  6 00:42:13 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000185.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000185.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 185  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000185.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    499.88 sec.
    Max Memory :      3547 MB
    Max Swap   :      5881 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
185
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 185
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 185: processing genes 16589 - 16678
Calculating significance of each gene.
Using projection method.
16589	TXLNB	3.186423e-01
16590	TXLNG	3.408795e-01
16591	TXN	1
16592	TXN2	1
16593	TXNDC11	7.625426e-01
16594	TXNDC12	1.486499e-01
16595	TXNDC15	7.140403e-01
16596	TXNDC16	8.518588e-01
16597	TXNDC17	1
16598	TXNDC2	5.689338e-01
In gene TXNDC3 the following bins exceed PROBCAP:
    COAD-AA-A01Z	categ 6	N = 1827    n = 1	mu =   3.62e-07
16599	TXNDC3	8.191803e-06
16600	TXNDC5	5.962428e-01
16601	TXNDC6	8.976427e-02
16602	TXNDC8	9.659620e-02
16603	TXNDC9	1
16604	TXNIP	8.758470e-01
16605	TXNL1	7.030111e-01
16606	TXNL4A	5.955860e-01
16607	TXNL4B	7.792084e-02
16608	TXNRD1	4.430555e-01
16609	TXNRD2	5.133443e-01
16610	TXNRD3IT1	1.208488e-01
16611	TYK2	9.985476e-01
16612	TYMP	7.827693e-01
16613	TYMS	1.303803e-01
16614	TYR	1.996401e-01
16615	TYRO3	9.003422e-01
16616	TYROBP	6.118535e-01
16617	TYRP1	5.874754e-01
16618	TYSND1	1
16619	TYW1	5.969687e-01
16620	TYW3	1
16621	U2AF1	4.447396e-01
16622	U2AF1L4	1
16623	U2AF2	6.513562e-01
16624	UACA	2.476006e-01
16625	UAP1	1
16626	UAP1L1	3.614643e-01
16627	UBA1	9.833404e-01
16628	UBA2	2.690477e-01
16629	UBA3	6.467117e-01
16630	UBA5	5.490211e-02
16631	UBA52	1.276838e-01
16632	UBA6	1.577725e-01
16633	UBA7	6.554276e-01
16634	UBAC1	5.874314e-01
16635	UBAC2	7.642551e-01
16636	UBAP1	1
16637	UBAP2	9.332557e-01
16638	UBAP2L	2.224516e-01
16639	UBASH3A	6.490292e-01
16640	UBASH3B	2.017178e-01
16641	UBB	1.427980e-01
16642	UBC	1
16643	UBD	1
16644	UBE2A	1.846210e-01
16645	UBE2B	1.406979e-01
16646	UBE2C	2.045548e-01
16647	UBE2CBP	3.444957e-01
16648	UBE2D1	2.651933e-01
16649	UBE2D2	1
16650	UBE2D3	5.840981e-01
16651	UBE2D4	4.880096e-01
16652	UBE2E1	1.213271e-01
16653	UBE2E2	3.506793e-01
16654	UBE2E3	1
16655	UBE2F	4.366532e-01
16656	UBE2G1	8.964873e-02
16657	UBE2G2	1
16658	UBE2H	1
16659	UBE2I	3.204799e-01
16660	UBE2J1	1
16661	UBE2J2	6.993510e-01
16662	UBE2K	1
16663	UBE2L3	9.422611e-02
16664	UBE2L6	1
16665	UBE2M	1
16666	UBE2N	1
16667	UBE2NL	1.245273e-05
16668	UBE2O	9.766679e-01
16669	UBE2Q1	1.572128e-01
16670	UBE2Q2	7.387435e-01
16671	UBE2R2	7.968153e-02
16672	UBE2S	1
16673	UBE2T	4.231163e-01
16674	UBE2U	1.239366e-01
16675	UBE2V1	1
16676	UBE2V2	1
16677	UBE2W	1
16678	UBE2Z	1
Done

Running MutSig 2:
Scatter job 185: processing genes 16589 - 16678
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
TXNDC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.360957e-02	ci left: 7.250203e-01	ci right 7.424434e-01	k: 7338	n:10000
Cons ci ratio: 1.826768e-02	ci left: 8.139530e-01	ci right 8.290592e-01	k: 8216	n:10000
KS ci ratio: 4.137052e-02	ci left: 4.631735e-01	ci right 4.828422e-01	k: 4730	n:10000
TXNDC3   10000 perm   2 sec   (4559 perm/sec)   p_kst 4.730000e-01   p_cons 8.216000e-01   p_joint 7.338000e-01

Outputting figure to mutsig2_images.part000000000185/TXNDC3.14_1827_10000_0.473_0.8216_0.7338.png
                gene_name: TXNDC3
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 2 percent done.
UACA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.712279e-02	ci left: 1.973215e-01	ci right 2.132506e-01	k: 2052	n:10000
Cons ci ratio: 4.199803e-02	ci left: 4.556848e-01	ci right 4.753353e-01	k: 4655	n:10000
KS ci ratio: 7.901581e-02	ci left: 1.896376e-01	ci right 2.053390e-01	k: 1974	n:10000
UACA   10000 perm   2 sec   (4341 perm/sec)   p_kst 1.974000e-01   p_cons 4.655000e-01   p_joint 2.052000e-01

Outputting figure to mutsig2_images.part000000000185/UACA.11_4370_10000_0.1974_0.4655_0.2052.png
                gene_name: UACA
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 4 percent done.
UBAP2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.063013e-01	ci left: 1.133015e-01	ci right 1.261210e-01	k: 1196	n:10000
Cons ci ratio: 1.708459e-02	ci left: 8.330730e-01	ci right 8.475282e-01	k: 8404	n:10000
KS ci ratio: 1.706816e-01	ci left: 4.580994e-02	ci right 5.445453e-02	k: 500	n:10000
UBAP2L   10000 perm   2 sec   (5477 perm/sec)   p_kst 5.000000e-02   p_cons 8.404000e-01   p_joint 1.196000e-01

Joint ci ratio: 9.274202e-02	ci left: 7.818459e-02	ci right 8.583745e-02	k: 1639	n:20000
Cons ci ratio: 1.212050e-02	ci left: 8.343385e-01	ci right 8.445626e-01	k: 16790	n:20000
KS ci ratio: 1.200010e-01	ci left: 4.760289e-02	ci right 5.372858e-02	k: 1012	n:20000
UBAP2L   20000 perm   4 sec   (4895 perm/sec)   p_kst 5.060000e-02   p_cons 8.395000e-01   p_joint 8.195000e-02

Joint ci ratio: 6.996109e-02	ci left: 9.140941e-02	ci right 9.806931e-02	k: 2841	n:30000
Cons ci ratio: 9.414410e-03	ci left: 8.484366e-01	ci right 8.564950e-01	k: 25575	n:30000
KS ci ratio: 9.712567e-02	ci left: 4.899332e-02	ci right 5.402732e-02	k: 1544	n:30000
UBAP2L   30000 perm   6 sec   (4673 perm/sec)   p_kst 5.146667e-02   p_cons 8.525000e-01   p_joint 9.470000e-02

Outputting figure to mutsig2_images.part000000000185/UBAP2L.7_3422_30000_0.051467_0.8525_0.0947.png
                gene_name: UBAP2L
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.091 
    ci_joint_bounds_right: 0.098 

Current progress: 6 percent done.
UBE2NL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.757470e-02	ci left: 1.954493e-01	ci right 2.113238e-01	k: 2033	n:10000
Cons ci ratio: 1.277834e-02	ci left: 8.980579e-01	ci right 9.097056e-01	k: 9040	n:10000
KS ci ratio: 1.071676e-01	ci left: 1.116413e-01	ci right 1.243822e-01	k: 1179	n:10000
UBE2NL   10000 perm   2 sec   (6305 perm/sec)   p_kst 1.179000e-01   p_cons 9.040000e-01   p_joint 2.033000e-01

Joint ci ratio: 5.363203e-02	ci left: 2.051151e-01	ci right 2.164691e-01	k: 4215	n:20000
Cons ci ratio: 8.466210e-03	ci left: 9.107432e-01	ci right 9.185357e-01	k: 18294	n:20000
KS ci ratio: 7.338550e-02	ci left: 1.202495e-01	ci right 1.294599e-01	k: 2496	n:20000
UBE2NL   20000 perm   4 sec   (5618 perm/sec)   p_kst 1.248000e-01   p_cons 9.147000e-01   p_joint 2.107500e-01

Outputting figure to mutsig2_images.part000000000185/UBE2NL.7_466_20000_0.1248_0.9147_0.21075.png
                gene_name: UBE2NL
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 8 percent done.
UBA6
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.044556e-03	ci left: 9.652030e-01	ci right 9.721204e-01	k: 9688	n:10000
Cons ci ratio: 4.582155e-02	ci left: 4.127924e-01	ci right 4.322528e-01	k: 4225	n:10000
KS ci ratio: 2.778928e-02	ci left: 6.561554e-01	ci right 6.747481e-01	k: 6655	n:10000
UBA6   10000 perm   2 sec   (4949 perm/sec)   p_kst 6.655000e-01   p_cons 4.225000e-01   p_joint 9.688000e-01

Outputting figure to mutsig2_images.part000000000185/UBA6.5_3291_10000_0.6655_0.4225_0.9688.png
                gene_name: UBA6
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 10 percent done.
UBAP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.872667e-02	ci left: 4.961503e-01	ci right 5.158462e-01	k: 5060	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
UBAP2   10000 perm   2 sec   (5371 perm/sec)   p_kst 1   p_cons 5.060000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UBAP2.5_3472_10000_1_0.506_1.png
                gene_name: UBAP2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
TXLNB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.121321e-02	ci left: 4.650710e-01	ci right 4.847436e-01	k: 4749	n:10000
Cons ci ratio: 2.765211e-02	ci left: 6.583700e-01	ci right 6.769322e-01	k: 6677	n:10000
KS ci ratio: 5.633897e-02	ci left: 3.169137e-01	ci right 3.353876e-01	k: 3261	n:10000
TXLNB   10000 perm   2 sec   (6004 perm/sec)   p_kst 3.261000e-01   p_cons 6.677000e-01   p_joint 4.749000e-01

Outputting figure to mutsig2_images.part000000000185/TXLNB.4_2091_10000_0.3261_0.6677_0.4749.png
                gene_name: TXLNB
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.48 

Current progress: 14 percent done.
TXLNG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.999762e-01	ci left: 3.329057e-02	ci right 4.078224e-02	k: 369	n:10000
Cons ci ratio: 1.671973e-01	ci left: 4.772935e-02	ci right 5.653387e-02	k: 520	n:10000
KS ci ratio: 2.723101e-01	ci left: 1.753307e-02	ci right 2.315124e-02	k: 202	n:10000
TXLNG   10000 perm   2 sec   (6146 perm/sec)   p_kst 2.020000e-02   p_cons 5.200000e-02   p_joint 3.690000e-02

Joint ci ratio: 1.788696e-01	ci left: 2.134943e-02	ci right 2.559067e-02	k: 468	n:20000
Cons ci ratio: 1.153940e-01	ci left: 5.139392e-02	ci right 5.773637e-02	k: 1090	n:20000
KS ci ratio: 1.892528e-01	ci left: 1.901003e-02	ci right 2.303092e-02	k: 419	n:20000
TXLNG   20000 perm   4 sec   (5479 perm/sec)   p_kst 2.095000e-02   p_cons 5.450000e-02   p_joint 2.340000e-02

Joint ci ratio: 1.801717e-01	ci left: 1.413255e-02	ci right 1.696240e-02	k: 465	n:30000
Cons ci ratio: 9.339243e-02	ci left: 5.287047e-02	ci right 5.808270e-02	k: 1663	n:30000
KS ci ratio: 1.564386e-01	ci left: 1.889435e-02	ci right 2.213278e-02	k: 614	n:30000
TXLNG   30000 perm   6 sec   (5217 perm/sec)   p_kst 2.046667e-02   p_cons 5.543333e-02   p_joint 1.550000e-02

Joint ci ratio: 1.539498e-01	ci left: 1.472094e-02	ci right 1.720005e-02	k: 637	n:40000
Cons ci ratio: 8.136045e-02	ci left: 5.261406e-02	ci right 5.710083e-02	k: 2193	n:40000
KS ci ratio: 1.349770e-01	ci left: 1.925458e-02	ci right 2.206561e-02	k: 825	n:40000
TXLNG   40000 perm   8 sec   (4915 perm/sec)   p_kst 2.062500e-02   p_cons 5.482500e-02   p_joint 1.592500e-02

Joint ci ratio: 1.478715e-01	ci left: 1.283429e-02	ci right 1.490272e-02	k: 692	n:50000
Cons ci ratio: 7.303214e-02	ci left: 5.248688e-02	ci right 5.648504e-02	k: 2723	n:50000
KS ci ratio: 1.188886e-01	ci left: 2.001347e-02	ci right 2.256253e-02	k: 1063	n:50000
TXLNG   50000 perm   10 sec   (4801 perm/sec)   p_kst 2.126000e-02   p_cons 5.446000e-02   p_joint 1.384000e-02

Joint ci ratio: 9.115483e-02	ci left: 2.853539e-02	ci right 3.127699e-02	k: 1793	n:60000
Cons ci ratio: 6.649493e-02	ci left: 5.292655e-02	ci right 5.658333e-02	k: 3284	n:60000
KS ci ratio: 1.085649e-01	ci left: 2.011091e-02	ci right 2.243571e-02	k: 1275	n:60000
TXLNG   60000 perm   13 sec   (4707 perm/sec)   p_kst 2.125000e-02   p_cons 5.473333e-02   p_joint 2.988333e-02

Joint ci ratio: 7.621553e-02	ci left: 3.502471e-02	ci right 3.781388e-02	k: 2548	n:70000
Cons ci ratio: 6.168595e-02	ci left: 5.285788e-02	ci right 5.623630e-02	k: 3817	n:70000
KS ci ratio: 9.995287e-02	ci left: 2.042431e-02	ci right 2.258704e-02	k: 1504	n:70000
TXLNG   70000 perm   15 sec   (4610 perm/sec)   p_kst 2.148571e-02   p_cons 5.452857e-02   p_joint 3.640000e-02

Outputting figure to mutsig2_images.part000000000185/TXLNG.4_1627_70000_0.021486_0.054529_0.0364.png
                gene_name: TXLNG
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.055 
      ci_cons_bounds_left: 0.053 
     ci_cons_bounds_right: 0.056 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.038 

Current progress: 16 percent done.
TXNDC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.621813e-02	ci left: 6.817379e-01	ci right 6.999508e-01	k: 6909	n:10000
Cons ci ratio: 5.187238e-02	ci left: 3.539639e-01	ci right 3.729157e-01	k: 3634	n:10000
KS ci ratio: 1.630765e-02	ci left: 8.453973e-01	ci right 8.593967e-01	k: 8525	n:10000
TXNDC11   10000 perm   2 sec   (5571 perm/sec)   p_kst 8.525000e-01   p_cons 3.634000e-01   p_joint 6.909000e-01

Outputting figure to mutsig2_images.part000000000185/TXNDC11.4_2925_10000_0.8525_0.3634_0.6909.png
                gene_name: TXNDC11
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 18 percent done.
UBA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.391837e-02	ci left: 5.620320e-01	ci right 5.815262e-01	k: 5718	n:10000
Cons ci ratio: 4.276542e-02	ci left: 4.467012e-01	ci right 4.663241e-01	k: 4565	n:10000
KS ci ratio: 3.930400e-02	ci left: 4.887518e-01	ci right 5.084490e-01	k: 4986	n:10000
UBA2   10000 perm   2 sec   (5653 perm/sec)   p_kst 4.986000e-01   p_cons 4.565000e-01   p_joint 5.718000e-01

Outputting figure to mutsig2_images.part000000000185/UBA2.4_1991_10000_0.4986_0.4565_0.5718.png
                gene_name: UBA2
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 20 percent done.
UBA7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.755860e-02	ci left: 1.321775e-01	ci right 1.458335e-01	k: 1389	n:10000
Cons ci ratio: 1.036694e-02	ci left: 9.296799e-01	ci right 9.394650e-01	k: 9347	n:10000
KS ci ratio: 1.991394e-01	ci left: 3.357607e-02	ci right 4.109654e-02	k: 372	n:10000
UBA7   10000 perm   2 sec   (5228 perm/sec)   p_kst 3.720000e-02   p_cons 9.347000e-01   p_joint 1.389000e-01

Joint ci ratio: 6.189432e-02	ci left: 1.618546e-01	ci right 1.722424e-01	k: 3340	n:20000
Cons ci ratio: 6.952286e-03	ci left: 9.374910e-01	ci right 9.440802e-01	k: 18817	n:20000
KS ci ratio: 1.409142e-01	ci left: 3.461962e-02	ci right 3.991600e-02	k: 744	n:20000
UBA7   20000 perm   4 sec   (4700 perm/sec)   p_kst 3.720000e-02   p_cons 9.408500e-01   p_joint 1.670000e-01

Joint ci ratio: 6.024605e-02	ci left: 1.199285e-01	ci right 1.274112e-01	k: 3709	n:30000
Cons ci ratio: 5.801429e-03	ci left: 9.355860e-01	ci right 9.410621e-01	k: 28151	n:30000
KS ci ratio: 1.154059e-01	ci left: 3.489227e-02	ci right 3.919799e-02	k: 1110	n:30000
UBA7   30000 perm   7 sec   (4497 perm/sec)   p_kst 3.700000e-02   p_cons 9.383667e-01   p_joint 1.236333e-01

Joint ci ratio: 5.359170e-02	ci left: 1.148044e-01	ci right 1.211512e-01	k: 4718	n:40000
Cons ci ratio: 5.002912e-03	ci left: 9.364574e-01	ci right 9.411787e-01	k: 37554	n:40000
KS ci ratio: 9.898880e-02	ci left: 3.585456e-02	ci right 3.961294e-02	k: 1508	n:40000
UBA7   40000 perm   9 sec   (4361 perm/sec)   p_kst 3.770000e-02   p_cons 9.388500e-01   p_joint 1.179500e-01

Outputting figure to mutsig2_images.part000000000185/UBA7.4_3135_40000_0.0377_0.93885_0.11795.png
                gene_name: UBA7
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 22 percent done.
UBASH3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.232190e-01	ci left: 8.621021e-02	ci right 9.762881e-02	k: 918	n:10000
Cons ci ratio: 3.132751e-02	ci left: 6.005602e-01	ci right 6.197756e-01	k: 6102	n:10000
KS ci ratio: 2.786829e-01	ci left: 1.669424e-02	ci right 2.219075e-02	k: 193	n:10000
UBASH3B   10000 perm   2 sec   (5874 perm/sec)   p_kst 1.930000e-02   p_cons 6.102000e-01   p_joint 9.180000e-02

Joint ci ratio: 1.126358e-01	ci left: 5.387513e-02	ci right 6.035438e-02	k: 1141	n:20000
Cons ci ratio: 2.165097e-02	ci left: 6.142844e-01	ci right 6.277804e-01	k: 12421	n:20000
KS ci ratio: 1.957807e-01	ci left: 1.772392e-02	ci right 2.161749e-02	k: 392	n:20000
UBASH3B   20000 perm   4 sec   (5252 perm/sec)   p_kst 1.960000e-02   p_cons 6.210500e-01   p_joint 5.705000e-02

Joint ci ratio: 9.248383e-02	ci left: 5.388111e-02	ci right 5.913852e-02	k: 1694	n:30000
Cons ci ratio: 1.807046e-02	ci left: 6.051219e-01	ci right 6.161900e-01	k: 18320	n:30000
KS ci ratio: 1.620422e-01	ci left: 1.758116e-02	ci right 2.071294e-02	k: 573	n:30000
UBASH3B   30000 perm   6 sec   (5007 perm/sec)   p_kst 1.910000e-02   p_cons 6.106667e-01   p_joint 5.646667e-02

Joint ci ratio: 1.030299e-01	ci left: 3.312280e-02	ci right 3.674512e-02	k: 1396	n:40000
Cons ci ratio: 1.530017e-02	ci left: 6.165754e-01	ci right 6.261070e-01	k: 24854	n:40000
KS ci ratio: 1.418846e-01	ci left: 1.739501e-02	ci right 2.007550e-02	k: 748	n:40000
UBASH3B   40000 perm   8 sec   (4849 perm/sec)   p_kst 1.870000e-02   p_cons 6.213500e-01   p_joint 3.490000e-02

Joint ci ratio: 8.572596e-02	ci left: 3.841665e-02	ci right 4.187700e-02	k: 2006	n:50000
Cons ci ratio: 1.405134e-02	ci left: 6.045463e-01	ci right 6.131211e-01	k: 30442	n:50000
KS ci ratio: 1.254959e-01	ci left: 1.793761e-02	ci right 2.035867e-02	k: 956	n:50000
UBASH3B   50000 perm   11 sec   (4724 perm/sec)   p_kst 1.912000e-02   p_cons 6.088400e-01   p_joint 4.012000e-02

Joint ci ratio: 7.484744e-02	ci left: 4.207805e-02	ci right 4.536627e-02	k: 2622	n:60000
Cons ci ratio: 1.284389e-02	ci left: 6.042972e-01	ci right 6.121256e-01	k: 36493	n:60000
KS ci ratio: 1.150427e-01	ci left: 1.789018e-02	ci right 2.009003e-02	k: 1138	n:60000
UBASH3B   60000 perm   13 sec   (4622 perm/sec)   p_kst 1.896667e-02   p_cons 6.082167e-01   p_joint 4.370000e-02

Joint ci ratio: 6.744000e-02	ci left: 4.448796e-02	ci right 4.760696e-02	k: 3222	n:70000
Cons ci ratio: 1.188730e-02	ci left: 6.047439e-01	ci right 6.119900e-01	k: 42586	n:70000
KS ci ratio: 1.069129e-01	ci left: 1.783452e-02	ci right 1.986278e-02	k: 1318	n:70000
UBASH3B   70000 perm   15 sec   (4531 perm/sec)   p_kst 1.882857e-02   p_cons 6.083714e-01   p_joint 4.602857e-02

Joint ci ratio: 6.609831e-02	ci left: 4.071881e-02	ci right 4.351452e-02	k: 3368	n:80000
Cons ci ratio: 1.114109e-02	ci left: 6.040561e-01	ci right 6.108361e-01	k: 48596	n:80000
KS ci ratio: 1.001240e-01	ci left: 1.785788e-02	ci right 1.975224e-02	k: 1503	n:80000
UBASH3B   80000 perm   18 sec   (4441 perm/sec)   p_kst 1.878750e-02   p_cons 6.074500e-01   p_joint 4.210000e-02

Joint ci ratio: 6.933246e-02	ci left: 3.310951e-02	ci right 3.549840e-02	k: 3086	n:90000
Cons ci ratio: 1.051385e-02	ci left: 6.038001e-01	ci right 6.101930e-01	k: 54630	n:90000
KS ci ratio: 9.465479e-02	ci left: 1.781412e-02	ci right 1.959487e-02	k: 1682	n:90000
UBASH3B   90000 perm   21 sec   (4369 perm/sec)   p_kst 1.868889e-02   p_cons 6.070000e-01   p_joint 3.428889e-02

Outputting figure to mutsig2_images.part000000000185/UBASH3B.4_2006_90000_0.018689_0.607_0.034289.png
                gene_name: UBASH3B
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.019 
        ci_ks_bounds_left: 0.018 
       ci_ks_bounds_right: 0.020 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.035 

Current progress: 24 percent done.
TXNDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.323372e-02	ci left: 4.413126e-01	ci right 4.609159e-01	k: 4511	n:10000
Cons ci ratio: 7.759865e-02	ci left: 1.953508e-01	ci right 2.112224e-01	k: 2032	n:10000
KS ci ratio: 5.268928e-02	ci left: 3.468072e-01	ci right 3.656766e-01	k: 3562	n:10000
TXNDC2   10000 perm   2 sec   (6032 perm/sec)   p_kst 3.562000e-01   p_cons 2.032000e-01   p_joint 4.511000e-01

Outputting figure to mutsig2_images.part000000000185/TXNDC2.3_1670_10000_0.3562_0.2032_0.4511.png
                gene_name: TXNDC2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 27 percent done.
TXNDC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.470359e-02	ci left: 4.248546e-01	ci right 4.443835e-01	k: 4346	n:10000
Cons ci ratio: 5.322182e-02	ci left: 3.422361e-01	ci right 3.610504e-01	k: 3516	n:10000
KS ci ratio: 4.873855e-02	ci left: 3.831109e-01	ci right 4.023516e-01	k: 3927	n:10000
TXNDC6   10000 perm   2 sec   (6581 perm/sec)   p_kst 3.927000e-01   p_cons 3.516000e-01   p_joint 4.346000e-01

Outputting figure to mutsig2_images.part000000000185/TXNDC6.3_828_10000_0.3927_0.3516_0.4346.png
                gene_name: TXNDC6
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 29 percent done.
TXNRD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.369038e-02	ci left: 5.653406e-01	ci right 5.848156e-01	k: 5751	n:10000
Cons ci ratio: 1.908499e-02	ci left: 8.005470e-01	ci right 8.160730e-01	k: 8084	n:10000
KS ci ratio: 5.889535e-02	ci left: 2.978678e-01	ci right 3.160448e-01	k: 3069	n:10000
TXNRD1   10000 perm   2 sec   (5826 perm/sec)   p_kst 3.069000e-01   p_cons 8.084000e-01   p_joint 5.751000e-01

Outputting figure to mutsig2_images.part000000000185/TXNRD1.3_2032_10000_0.3069_0.8084_0.5751.png
                gene_name: TXNRD1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.58 

Current progress: 31 percent done.
TXNRD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.422738e-02	ci left: 2.626030e-01	ci right 2.801304e-01	k: 2713	n:10000
Cons ci ratio: 7.759865e-02	ci left: 1.953508e-01	ci right 2.112224e-01	k: 2032	n:10000
KS ci ratio: 5.019975e-02	ci left: 3.691794e-01	ci right 3.882913e-01	k: 3787	n:10000
TXNRD2   10000 perm   2 sec   (6219 perm/sec)   p_kst 3.787000e-01   p_cons 2.032000e-01   p_joint 2.713000e-01

Outputting figure to mutsig2_images.part000000000185/TXNRD2.3_1643_10000_0.3787_0.2032_0.2713.png
                gene_name: TXNRD2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 33 percent done.
TYMS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.775073e-02	ci left: 2.422288e-01	ci right 2.593166e-01	k: 2507	n:10000
Cons ci ratio: 4.707361e-02	ci left: 3.997400e-01	ci right 4.191128e-01	k: 4094	n:10000
KS ci ratio: 1.020829e-01	ci left: 1.219021e-01	ci right 1.351151e-01	k: 1284	n:10000
TYMS   10000 perm   2 sec   (6365 perm/sec)   p_kst 1.284000e-01   p_cons 4.094000e-01   p_joint 2.507000e-01

Joint ci ratio: 5.181454e-02	ci left: 2.167018e-01	ci right 2.282790e-01	k: 4449	n:20000
Cons ci ratio: 3.425451e-02	ci left: 3.888636e-01	ci right 4.024667e-01	k: 7913	n:20000
KS ci ratio: 7.263950e-02	ci left: 1.224640e-01	ci right 1.317447e-01	k: 2541	n:20000
TYMS   20000 perm   4 sec   (5626 perm/sec)   p_kst 1.270500e-01   p_cons 3.956500e-01   p_joint 2.224500e-01

Outputting figure to mutsig2_images.part000000000185/TYMS.3_970_20000_0.12705_0.39565_0.22245.png
                gene_name: TYMS
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 35 percent done.
TYR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.306344e-01	ci left: 7.717981e-02	ci right 8.806479e-02	k: 825	n:10000
Cons ci ratio: 9.796826e-02	ci left: 1.311983e-01	ci right 1.448133e-01	k: 1379	n:10000
KS ci ratio: 1.409374e-01	ci left: 6.671876e-02	ci right 7.693236e-02	k: 717	n:10000
TYR   10000 perm   2 sec   (6129 perm/sec)   p_kst 7.170000e-02   p_cons 1.379000e-01   p_joint 8.250000e-02

Joint ci ratio: 8.249123e-02	ci left: 9.724970e-02	ci right 1.056666e-01	k: 2028	n:20000
Cons ci ratio: 6.869877e-02	ci left: 1.351694e-01	ci right 1.448355e-01	k: 2799	n:20000
KS ci ratio: 1.013818e-01	ci left: 6.601338e-02	ci right 7.311238e-02	k: 1390	n:20000
TYR   20000 perm   4 sec   (5036 perm/sec)   p_kst 6.950000e-02   p_cons 1.399500e-01   p_joint 1.014000e-01

Joint ci ratio: 6.828821e-02	ci left: 9.557701e-02	ci right 1.023675e-01	k: 2968	n:30000
Cons ci ratio: 5.763369e-02	ci left: 1.297361e-01	ci right 1.374683e-01	k: 4007	n:30000
KS ci ratio: 8.244977e-02	ci left: 6.717056e-02	ci right 7.297970e-02	k: 2101	n:30000
TYR   30000 perm   6 sec   (4876 perm/sec)   p_kst 7.003333e-02   p_cons 1.335667e-01   p_joint 9.893333e-02

Outputting figure to mutsig2_images.part000000000185/TYR.3_1610_30000_0.070033_0.13357_0.098933.png
                gene_name: TYR
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.096 
    ci_joint_bounds_right: 0.10 

Current progress: 37 percent done.
TYRO3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.355812e-02	ci left: 4.376211e-01	ci right 4.572096e-01	k: 4474	n:10000
KS ci ratio: 9.608188e-03	ci left: 9.386903e-01	ci right 9.478494e-01	k: 9434	n:10000
TYRO3   10000 perm   2 sec   (5715 perm/sec)   p_kst 9.434000e-01   p_cons 4.474000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/TYRO3.3_2749_10000_0.9434_0.4474_1.png
                gene_name: TYRO3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
TYW1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.646289e-02	ci left: 8.429516e-01	ci right 8.570439e-01	k: 8501	n:10000
Cons ci ratio: 2.404485e-02	ci left: 7.177492e-01	ci right 7.353186e-01	k: 7266	n:10000
KS ci ratio: 2.505158e-02	ci left: 7.009962e-01	ci right 7.188814e-01	k: 7100	n:10000
TYW1   10000 perm   2 sec   (6370 perm/sec)   p_kst 7.100000e-01   p_cons 7.266000e-01   p_joint 8.501000e-01

Outputting figure to mutsig2_images.part000000000185/TYW1.3_2263_10000_0.71_0.7266_0.8501.png
                gene_name: TYW1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 41 percent done.
U2AF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.779280e-02	ci left: 3.059006e-01	ci right 3.242072e-01	k: 3150	n:10000
Cons ci ratio: 4.996592e-02	ci left: 3.713681e-01	ci right 3.905013e-01	k: 3809	n:10000
KS ci ratio: 7.548344e-02	ci left: 2.043197e-01	ci right 2.204482e-01	k: 2123	n:10000
U2AF2   10000 perm   2 sec   (6283 perm/sec)   p_kst 2.123000e-01   p_cons 3.809000e-01   p_joint 3.150000e-01

Outputting figure to mutsig2_images.part000000000185/U2AF2.3_1476_10000_0.2123_0.3809_0.315.png
                gene_name: U2AF2
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 43 percent done.
UBA5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.566232e-02	ci left: 4.144867e-01	ci right 4.339575e-01	k: 4242	n:10000
Cons ci ratio: 1.712220e-01	ci left: 4.552219e-02	ci right 5.414247e-02	k: 497	n:10000
KS ci ratio: 4.194744e-02	ci left: 4.562838e-01	ci right 4.759360e-01	k: 4661	n:10000
UBA5   10000 perm   2 sec   (6235 perm/sec)   p_kst 4.661000e-01   p_cons 4.970000e-02   p_joint 4.242000e-01

Joint ci ratio: 3.231751e-02	ci left: 4.169379e-01	ci right 4.306842e-01	k: 8476	n:20000
Cons ci ratio: 1.206295e-01	ci left: 4.711722e-02	ci right 5.321441e-02	k: 1002	n:20000
KS ci ratio: 2.972938e-02	ci left: 4.580680e-01	ci right 4.719422e-01	k: 9300	n:20000
UBA5   20000 perm   4 sec   (5583 perm/sec)   p_kst 4.650000e-01   p_cons 5.010000e-02   p_joint 4.238000e-01

Joint ci ratio: 2.727149e-02	ci left: 4.022316e-01	ci right 4.133863e-01	k: 12234	n:30000
Cons ci ratio: 9.952582e-02	ci left: 4.671454e-02	ci right 5.163990e-02	k: 1474	n:30000
KS ci ratio: 2.442474e-02	ci left: 4.562791e-01	ci right 4.675950e-01	k: 13858	n:30000
UBA5   30000 perm   6 sec   (5342 perm/sec)   p_kst 4.619333e-01   p_cons 4.913333e-02   p_joint 4.078000e-01

Outputting figure to mutsig2_images.part000000000185/UBA5.3_1263_30000_0.46193_0.049133_0.4078.png
                gene_name: UBA5
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.047 
     ci_cons_bounds_right: 0.052 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.41 

Current progress: 45 percent done.
UBAC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.879990e-02	ci left: 3.825137e-01	ci right 4.017492e-01	k: 3921	n:10000
KS ci ratio: 4.968114e-02	ci left: 3.740545e-01	ci right 3.932134e-01	k: 3836	n:10000
UBAC1   10000 perm   2 sec   (6393 perm/sec)   p_kst 3.836000e-01   p_cons 3.921000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UBAC1.3_1258_10000_0.3836_0.3921_1.png
                gene_name: UBAC1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
UBASH3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.627528e-02	ci left: 1.353117e-01	ci right 1.490975e-01	k: 1421	n:10000
Cons ci ratio: 6.952695e-02	ci left: 2.327426e-01	ci right 2.496084e-01	k: 2411	n:10000
KS ci ratio: 6.111290e-02	ci left: 2.825056e-01	ci right 3.004161e-01	k: 2914	n:10000
UBASH3A   10000 perm   2 sec   (5784 perm/sec)   p_kst 2.914000e-01   p_cons 2.411000e-01   p_joint 1.421000e-01

Outputting figure to mutsig2_images.part000000000185/UBASH3A.3_2046_10000_0.2914_0.2411_0.1421.png
                gene_name: UBASH3A
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 49 percent done.
UBE2E1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.579098e-02	ci left: 5.354785e-01	ci right 5.550951e-01	k: 5453	n:10000
Cons ci ratio: 6.514930e-02	ci left: 2.570620e-01	ci right 2.744747e-01	k: 2657	n:10000
KS ci ratio: 8.092922e-03	ci left: 9.551367e-01	ci right 9.629931e-01	k: 9592	n:10000
UBE2E1   10000 perm   1 sec   (6708 perm/sec)   p_kst 9.592000e-01   p_cons 2.657000e-01   p_joint 5.453000e-01

Outputting figure to mutsig2_images.part000000000185/UBE2E1.3_602_10000_0.9592_0.2657_0.5453.png
                gene_name: UBE2E1
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 51 percent done.
UBE2Q1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.327507e-02	ci left: 1.430542e-01	ci right 1.571503e-01	k: 1500	n:10000
Cons ci ratio: 2.408720e-02	ci left: 7.170425e-01	ci right 7.346258e-01	k: 7259	n:10000
KS ci ratio: 1.309804e-01	ci left: 7.679184e-02	ci right 8.765300e-02	k: 821	n:10000
UBE2Q1   10000 perm   2 sec   (6391 perm/sec)   p_kst 8.210000e-02   p_cons 7.259000e-01   p_joint 1.500000e-01

Joint ci ratio: 7.016245e-02	ci left: 1.302431e-01	ci right 1.397633e-01	k: 2699	n:20000
Cons ci ratio: 1.678234e-02	ci left: 7.255514e-01	ci right 7.378812e-01	k: 14635	n:20000
KS ci ratio: 9.412430e-02	ci left: 7.603179e-02	ci right 8.359090e-02	k: 1595	n:20000
UBE2Q1   20000 perm   4 sec   (5630 perm/sec)   p_kst 7.975000e-02   p_cons 7.317500e-01   p_joint 1.349500e-01

Outputting figure to mutsig2_images.part000000000185/UBE2Q1.3_1321_20000_0.07975_0.73175_0.13495.png
                gene_name: UBE2Q1
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.080 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.084 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 53 percent done.
UBE2R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.575464e-02	ci left: 3.214794e-01	ci right 3.400192e-01	k: 3307	n:10000
KS ci ratio: 2.376064e-02	ci left: 7.224953e-01	ci right 7.399698e-01	k: 7313	n:10000
UBE2R2   10000 perm   2 sec   (6623 perm/sec)   p_kst 7.313000e-01   p_cons 3.307000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UBE2R2.3_737_10000_0.7313_0.3307_1.png
                gene_name: UBE2R2
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
UBE2U
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.218371e-01	ci left: 8.805737e-02	ci right 9.958050e-02	k: 937	n:10000
Cons ci ratio: 8.363681e-02	ci left: 1.725141e-01	ci right 1.876728e-01	k: 1800	n:10000
KS ci ratio: 1.615502e-01	ci left: 5.109258e-02	ci right 6.016847e-02	k: 555	n:10000
UBE2U   10000 perm   2 sec   (6491 perm/sec)   p_kst 5.550000e-02   p_cons 1.800000e-01   p_joint 9.370000e-02

Joint ci ratio: 9.808669e-02	ci left: 7.031150e-02	ci right 7.761295e-02	k: 1478	n:20000
Cons ci ratio: 5.834242e-02	ci left: 1.787499e-01	ci right 1.895421e-01	k: 3682	n:20000
KS ci ratio: 1.141814e-01	ci left: 5.246402e-02	ci right 5.886593e-02	k: 1112	n:20000
UBE2U   20000 perm   3 sec   (5749 perm/sec)   p_kst 5.560000e-02   p_cons 1.841000e-01   p_joint 7.390000e-02

Joint ci ratio: 7.915750e-02	ci left: 7.256766e-02	ci right 7.858151e-02	k: 2266	n:30000
Cons ci ratio: 4.780905e-02	ci left: 1.786717e-01	ci right 1.874564e-01	k: 5491	n:30000
KS ci ratio: 9.506734e-02	ci left: 5.107803e-02	ci right 5.620885e-02	k: 1608	n:30000
UBE2U   30000 perm   5 sec   (5468 perm/sec)   p_kst 5.360000e-02   p_cons 1.830333e-01   p_joint 7.553333e-02

Outputting figure to mutsig2_images.part000000000185/UBE2U.3_717_30000_0.0536_0.18303_0.075533.png
                gene_name: UBE2U
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.054 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.056 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.076 
     ci_joint_bounds_left: 0.073 
    ci_joint_bounds_right: 0.079 

Current progress: 57 percent done.
TXNDC12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.004364e-02	ci left: 2.300756e-01	ci right 2.468770e-01	k: 2384	n:10000
Cons ci ratio: 1.061502e-01	ci left: 1.135945e-01	ci right 1.264278e-01	k: 1199	n:10000
KS ci ratio: 1.146253e-01	ci left: 9.866755e-02	ci right 1.107638e-01	k: 1046	n:10000
TXNDC12   10000 perm   1 sec   (7038 perm/sec)   p_kst 1.046000e-01   p_cons 1.199000e-01   p_joint 2.384000e-01

Joint ci ratio: 5.855688e-02	ci left: 1.776625e-01	ci right 1.884298e-01	k: 3660	n:20000
Cons ci ratio: 7.550851e-02	ci left: 1.142482e-01	ci right 1.232630e-01	k: 2374	n:20000
KS ci ratio: 8.020090e-02	ci left: 1.024046e-01	ci right 1.110102e-01	k: 2133	n:20000
TXNDC12   20000 perm   3 sec   (6166 perm/sec)   p_kst 1.066500e-01   p_cons 1.187000e-01   p_joint 1.830000e-01

Outputting figure to mutsig2_images.part000000000185/TXNDC12.2_547_20000_0.10665_0.1187_0.183.png
                gene_name: TXNDC12
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 59 percent done.
TXNDC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.167540e-01	ci left: 9.535564e-02	ci right 1.072778e-01	k: 1012	n:10000
Cons ci ratio: 1.966875e-01	ci left: 3.443296e-02	ci right 4.203907e-02	k: 381	n:10000
KS ci ratio: 2.583643e-01	ci left: 1.958938e-02	ci right 2.549330e-02	k: 224	n:10000
TXNDC15   10000 perm   2 sec   (6085 perm/sec)   p_kst 2.240000e-02   p_cons 3.810000e-02   p_joint 1.012000e-01

Joint ci ratio: 8.242343e-02	ci left: 9.739693e-02	ci right 1.058193e-01	k: 2031	n:20000
Cons ci ratio: 1.387052e-01	ci left: 3.573081e-02	ci right 4.110445e-02	k: 767	n:20000
KS ci ratio: 1.771369e-01	ci left: 2.177980e-02	ci right 2.606015e-02	k: 477	n:20000
TXNDC15   20000 perm   3 sec   (5733 perm/sec)   p_kst 2.385000e-02   p_cons 3.835000e-02   p_joint 1.015500e-01

Joint ci ratio: 7.119933e-02	ci left: 8.849000e-02	ci right 9.505597e-02	k: 2752	n:30000
Cons ci ratio: 1.151371e-01	ci left: 3.505430e-02	ci right 3.936925e-02	k: 1115	n:30000
KS ci ratio: 1.422130e-01	ci left: 2.294098e-02	ci right 2.648522e-02	k: 740	n:30000
TXNDC15   30000 perm   5 sec   (5557 perm/sec)   p_kst 2.466667e-02   p_cons 3.716667e-02   p_joint 9.173333e-02

Joint ci ratio: 6.121788e-02	ci left: 9.012162e-02	ci right 9.583763e-02	k: 3718	n:40000
Cons ci ratio: 9.919391e-02	ci left: 3.570814e-02	ci right 3.945938e-02	k: 1502	n:40000
KS ci ratio: 1.209204e-01	ci left: 2.404998e-02	ci right 2.716941e-02	k: 1023	n:40000
TXNDC15   40000 perm   7 sec   (5416 perm/sec)   p_kst 2.557500e-02   p_cons 3.755000e-02   p_joint 9.295000e-02

Joint ci ratio: 5.846971e-02	ci left: 8.006329e-02	ci right 8.490532e-02	k: 4123	n:50000
Cons ci ratio: 8.906112e-02	ci left: 3.563636e-02	ci right 3.897763e-02	k: 1864	n:50000
KS ci ratio: 1.083286e-01	ci left: 2.413587e-02	ci right 2.691959e-02	k: 1275	n:50000
TXNDC15   50000 perm   9 sec   (5296 perm/sec)   p_kst 2.550000e-02   p_cons 3.728000e-02   p_joint 8.246000e-02

Joint ci ratio: 5.020543e-02	ci left: 8.991300e-02	ci right 9.455986e-02	k: 5533	n:60000
Cons ci ratio: 8.111337e-02	ci left: 3.594489e-02	ci right 3.900006e-02	k: 2247	n:60000
KS ci ratio: 9.939761e-02	ci left: 2.400936e-02	ci right 2.653684e-02	k: 1515	n:60000
TXNDC15   60000 perm   12 sec   (5177 perm/sec)   p_kst 2.525000e-02   p_cons 3.745000e-02   p_joint 9.221667e-02

Outputting figure to mutsig2_images.part000000000185/TXNDC15.2_1103_60000_0.02525_0.03745_0.092217.png
                gene_name: TXNDC15
               theta_stop: 0.099 
                    nperm: 60000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.036 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.095 

Current progress: 61 percent done.
TXNDC16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.677804e-02	ci left: 8.379602e-01	ci right 8.522382e-01	k: 8452	n:10000
KS ci ratio: 3.643801e-02	ci left: 5.265668e-01	ci right 5.462120e-01	k: 5364	n:10000
TXNDC16   10000 perm   2 sec   (6098 perm/sec)   p_kst 5.364000e-01   p_cons 8.452000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/TXNDC16.2_2554_10000_0.5364_0.8452_1.png
                gene_name: TXNDC16
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
TXNDC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.458342e-02	ci left: 1.692694e-01	ci right 1.843194e-01	k: 1767	n:10000
Cons ci ratio: 1.745679e-01	ci left: 4.379660e-02	ci right 5.226918e-02	k: 479	n:10000
KS ci ratio: 1.541574e-02	ci left: 8.592688e-01	ci right 8.727172e-01	k: 8661	n:10000
TXNDC5   10000 perm   1 sec   (6667 perm/sec)   p_kst 8.661000e-01   p_cons 4.790000e-02   p_joint 1.767000e-01

Joint ci ratio: 3.318616e-02	ci left: 4.040698e-01	ci right 4.177562e-01	k: 8218	n:20000
Cons ci ratio: 1.263723e-01	ci left: 4.299245e-02	ci right 4.884048e-02	k: 917	n:20000
KS ci ratio: 1.086676e-02	ci left: 8.620125e-01	ci right 8.714806e-01	k: 17336	n:20000
TXNDC5   20000 perm   3 sec   (5868 perm/sec)   p_kst 8.668000e-01   p_cons 4.585000e-02   p_joint 4.109000e-01

Joint ci ratio: 3.967590e-02	ci left: 2.406049e-01	ci right 2.503778e-01	k: 7364	n:30000
Cons ci ratio: 1.088567e-01	ci left: 3.917357e-02	ci right 4.371578e-02	k: 1242	n:30000
KS ci ratio: 8.876267e-03	ci left: 8.628016e-01	ci right 8.705273e-01	k: 26001	n:30000
TXNDC5   30000 perm   5 sec   (5478 perm/sec)   p_kst 8.667000e-01   p_cons 4.140000e-02   p_joint 2.454667e-01

Joint ci ratio: 3.175451e-02	ci left: 2.714739e-01	ci right 2.802586e-01	k: 11034	n:40000
Cons ci ratio: 9.482145e-02	ci left: 3.902881e-02	ci right 4.293818e-02	k: 1638	n:40000
KS ci ratio: 7.671158e-03	ci left: 8.638099e-01	ci right 8.704867e-01	k: 34687	n:40000
TXNDC5   40000 perm   8 sec   (5230 perm/sec)   p_kst 8.671750e-01   p_cons 4.095000e-02   p_joint 2.758500e-01

Outputting figure to mutsig2_images.part000000000185/TXNDC5.2_1339_40000_0.86718_0.04095_0.27585.png
                gene_name: TXNDC5
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 65 percent done.
TXNL4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.069142e-02	ci left: 7.738773e-01	ci right 7.901581e-01	k: 7821	n:10000
KS ci ratio: 1.266032e-02	ci left: 8.997006e-01	ci right 9.112619e-01	k: 9056	n:10000
TXNL4B   10000 perm   1 sec   (7100 perm/sec)   p_kst 9.056000e-01   p_cons 7.821000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/TXNL4B.2_462_10000_0.9056_0.7821_1.png
                gene_name: TXNL4B
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
TXNRD3IT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.783921e-02	ci left: 6.553502e-01	ci right 6.739538e-01	k: 6647	n:10000
KS ci ratio: 2.772066e-02	ci left: 6.572627e-01	ci right 6.758402e-01	k: 6666	n:10000
TXNRD3IT1   10000 perm   1 sec   (7089 perm/sec)   p_kst 6.666000e-01   p_cons 6.647000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/TXNRD3IT1.2_410_10000_0.6666_0.6647_1.png
                gene_name: TXNRD3IT1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
TYRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.073706e-02	ci left: 4.708643e-01	ci right 4.905469e-01	k: 4807	n:10000
Cons ci ratio: 1.007379e-01	ci left: 1.248365e-01	ci right 1.381789e-01	k: 1314	n:10000
KS ci ratio: 6.688109e-03	ci left: 9.683648e-01	ci right 9.749566e-01	k: 9718	n:10000
TYRP1   10000 perm   2 sec   (6391 perm/sec)   p_kst 9.718000e-01   p_cons 1.314000e-01   p_joint 4.807000e-01

Joint ci ratio: 4.208503e-02	ci left: 2.961381e-01	ci right 3.089194e-01	k: 6050	n:20000
Cons ci ratio: 7.075435e-02	ci left: 1.283224e-01	ci right 1.377845e-01	k: 2660	n:20000
KS ci ratio: 4.729805e-03	ci left: 9.693590e-01	ci right 9.740025e-01	k: 19435	n:20000
TYRP1   20000 perm   4 sec   (5671 perm/sec)   p_kst 9.717500e-01   p_cons 1.330000e-01   p_joint 3.025000e-01

Outputting figure to mutsig2_images.part000000000185/TYRP1.2_1642_20000_0.97175_0.133_0.3025.png
                gene_name: TYRP1
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 71 percent done.
U2AF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.431467e-02	ci left: 4.291426e-01	ci right 4.486930e-01	k: 4389	n:10000
Cons ci ratio: 2.338006e-02	ci left: 7.288590e-01	ci right 7.462025e-01	k: 7376	n:10000
KS ci ratio: 1.137775e-01	ci left: 1.000319e-01	ci right 1.121987e-01	k: 1060	n:10000
U2AF1   10000 perm   1 sec   (6784 perm/sec)   p_kst 1.060000e-01   p_cons 7.376000e-01   p_joint 4.389000e-01

Joint ci ratio: 5.304270e-02	ci left: 2.087785e-01	ci right 2.202046e-01	k: 4289	n:20000
Cons ci ratio: 1.751259e-02	ci left: 7.083860e-01	ci right 7.209516e-01	k: 14294	n:20000
KS ci ratio: 8.096751e-02	ci left: 1.006368e-01	ci right 1.091784e-01	k: 2097	n:20000
U2AF1   20000 perm   3 sec   (6010 perm/sec)   p_kst 1.048500e-01   p_cons 7.147000e-01   p_joint 2.144500e-01

Outputting figure to mutsig2_images.part000000000185/U2AF1.2_826_20000_0.10485_0.7147_0.21445.png
                gene_name: U2AF1
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 73 percent done.
UAP1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.927536e-03	ci left: 9.662559e-01	ci right 9.730668e-01	k: 9698	n:10000
Cons ci ratio: 8.952882e-03	ci left: 9.460656e-01	ci right 9.546696e-01	k: 9505	n:10000
KS ci ratio: 2.149680e-02	ci left: 7.604092e-01	ci right 7.770340e-01	k: 7688	n:10000
UAP1L1   10000 perm   2 sec   (6465 perm/sec)   p_kst 7.688000e-01   p_cons 9.505000e-01   p_joint 9.698000e-01

Outputting figure to mutsig2_images.part000000000185/UAP1L1.2_1560_10000_0.7688_0.9505_0.9698.png
                gene_name: UAP1L1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 76 percent done.
UBA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.338807e-02	ci left: 5.697529e-01	ci right 5.892008e-01	k: 5795	n:10000
KS ci ratio: 3.587043e-02	ci left: 5.343769e-01	ci right 5.539974e-01	k: 5442	n:10000
UBA1   10000 perm   2 sec   (5649 perm/sec)   p_kst 5.442000e-01   p_cons 5.795000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UBA1.2_3277_10000_0.5442_0.5795_1.png
                gene_name: UBA1
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
UBA3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.735981e-02	ci left: 6.631019e-01	ci right 6.815976e-01	k: 6724	n:10000
KS ci ratio: 4.371700e-02	ci left: 4.358254e-01	ci right 4.554063e-01	k: 4456	n:10000
UBA3   10000 perm   2 sec   (6653 perm/sec)   p_kst 4.456000e-01   p_cons 6.724000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UBA3.2_1464_10000_0.4456_0.6724_1.png
                gene_name: UBA3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 80 percent done.
UBA52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.807057e-02	ci left: 6.516263e-01	ci right 6.702799e-01	k: 6610	n:10000
Cons ci ratio: 3.177040e-02	ci left: 5.938334e-01	ci right 6.131063e-01	k: 6035	n:10000
KS ci ratio: 5.722203e-02	ci left: 3.101662e-01	ci right 3.285391e-01	k: 3193	n:10000
UBA52   10000 perm   1 sec   (7410 perm/sec)   p_kst 3.193000e-01   p_cons 6.035000e-01   p_joint 6.610000e-01

Outputting figure to mutsig2_images.part000000000185/UBA52.2_403_10000_0.3193_0.6035_0.661.png
                gene_name: UBA52
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 82 percent done.
UBB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.671421e-03	ci left: 9.893898e-01	ci right 9.931155e-01	k: 9914	n:10000
Cons ci ratio: 1.047675e-02	ci left: 9.283358e-01	ci right 9.382100e-01	k: 9334	n:10000
KS ci ratio: 4.404582e-02	ci left: 4.321347e-01	ci right 4.516992e-01	k: 4419	n:10000
UBB   10000 perm   1 sec   (6924 perm/sec)   p_kst 4.419000e-01   p_cons 9.334000e-01   p_joint 9.914000e-01

Outputting figure to mutsig2_images.part000000000185/UBB.2_694_10000_0.4419_0.9334_0.9914.png
                gene_name: UBB
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.99 
     ci_joint_bounds_left: 0.99 
    ci_joint_bounds_right: 0.99 

Current progress: 84 percent done.
UBE2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.712220e-01	ci left: 4.552219e-02	ci right 5.414247e-02	k: 497	n:10000
Cons ci ratio: 1.098941e-02	ci left: 9.219324e-01	ci right 9.322172e-01	k: 9272	n:10000
KS ci ratio: 2.945635e-01	ci left: 1.483579e-02	ci right 2.005075e-02	k: 173	n:10000
UBE2A   10000 perm   1 sec   (7059 perm/sec)   p_kst 1.730000e-02   p_cons 9.272000e-01   p_joint 4.970000e-02

Joint ci ratio: 1.557474e-01	ci left: 2.830458e-02	ci right 3.313313e-02	k: 613	n:20000
Cons ci ratio: 7.823316e-03	ci left: 9.225404e-01	ci right 9.298351e-01	k: 18525	n:20000
KS ci ratio: 2.184120e-01	ci left: 1.411743e-02	ci right 1.762537e-02	k: 316	n:20000
UBE2A   20000 perm   3 sec   (6201 perm/sec)   p_kst 1.580000e-02   p_cons 9.262500e-01   p_joint 3.065000e-02

Joint ci ratio: 1.599248e-01	ci left: 1.806137e-02	ci right 2.123262e-02	k: 588	n:30000
Cons ci ratio: 6.403547e-03	ci left: 9.228779e-01	ci right 9.288393e-01	k: 27777	n:30000
KS ci ratio: 1.772951e-01	ci left: 1.461049e-02	ci right 1.748434e-02	k: 480	n:30000
UBE2A   30000 perm   5 sec   (5857 perm/sec)   p_kst 1.600000e-02   p_cons 9.259000e-01   p_joint 1.960000e-02

Joint ci ratio: 1.389816e-01	ci left: 1.814326e-02	ci right 2.087713e-02	k: 779	n:40000
Cons ci ratio: 5.583705e-03	ci left: 9.223245e-01	ci right 9.275136e-01	k: 36998	n:40000
KS ci ratio: 1.530985e-01	ci left: 1.488932e-02	ci right 1.738165e-02	k: 644	n:40000
UBE2A   40000 perm   7 sec   (5661 perm/sec)   p_kst 1.610000e-02   p_cons 9.249500e-01   p_joint 1.947500e-02

Joint ci ratio: 1.251629e-01	ci left: 1.803453e-02	ci right 2.046174e-02	k: 961	n:50000
Cons ci ratio: 5.058189e-03	ci left: 9.207908e-01	ci right 9.254799e-01	k: 46158	n:50000
KS ci ratio: 1.380053e-01	ci left: 1.478310e-02	ci right 1.699362e-02	k: 793	n:50000
UBE2A   50000 perm   9 sec   (5498 perm/sec)   p_kst 1.586000e-02   p_cons 9.231600e-01   p_joint 1.922000e-02

Joint ci ratio: 1.129870e-01	ci left: 1.855438e-02	ci right 2.079242e-02	k: 1179	n:60000
Cons ci ratio: 4.627485e-03	ci left: 9.206861e-01	ci right 9.249729e-01	k: 55371	n:60000
KS ci ratio: 1.249721e-01	ci left: 1.512420e-02	ci right 1.715632e-02	k: 967	n:60000
UBE2A   60000 perm   11 sec   (5354 perm/sec)   p_kst 1.611667e-02   p_cons 9.228500e-01   p_joint 1.965000e-02

Joint ci ratio: 1.050215e-01	ci left: 1.848848e-02	ci right 2.055162e-02	k: 1365	n:70000
Cons ci ratio: 4.295121e-03	ci left: 9.204801e-01	ci right 9.244562e-01	k: 64574	n:70000
KS ci ratio: 1.166681e-01	ci left: 1.494469e-02	ci right 1.681004e-02	k: 1110	n:70000
UBE2A   70000 perm   13 sec   (5227 perm/sec)   p_kst 1.585714e-02   p_cons 9.224857e-01   p_joint 1.950000e-02

Joint ci ratio: 9.885870e-02	ci left: 1.832128e-02	ci right 2.023881e-02	k: 1541	n:80000
Cons ci ratio: 4.008852e-03	ci left: 9.209288e-01	ci right 9.246404e-01	k: 73824	n:80000
KS ci ratio: 1.096482e-01	ci left: 1.486209e-02	ci right 1.659829e-02	k: 1257	n:80000
UBE2A   80000 perm   16 sec   (5112 perm/sec)   p_kst 1.571250e-02   p_cons 9.228000e-01   p_joint 1.926250e-02

Joint ci ratio: 9.322549e-02	ci left: 1.836771e-02	ci right 2.017457e-02	k: 1733	n:90000
Cons ci ratio: 3.777790e-03	ci left: 9.211044e-01	ci right 9.246017e-01	k: 83058	n:90000
KS ci ratio: 1.037223e-01	ci left: 1.481130e-02	ci right 1.644236e-02	k: 1405	n:90000
UBE2A   90000 perm   18 sec   (5003 perm/sec)   p_kst 1.561111e-02   p_cons 9.228667e-01   p_joint 1.925556e-02

Joint ci ratio: 8.866859e-02	ci left: 1.831931e-02	ci right 2.002874e-02	k: 1916	n:100000
Cons ci ratio: 3.584076e-03	ci left: 9.211890e-01	ci right 9.245064e-01	k: 92286	n:100000
KS ci ratio: 9.850288e-02	ci left: 1.482150e-02	ci right 1.636679e-02	k: 1558	n:100000
UBE2A   100000 perm   20 sec   (4902 perm/sec)   p_kst 1.558000e-02   p_cons 9.228600e-01   p_joint 1.916000e-02

Outputting figure to mutsig2_images.part000000000185/UBE2A.2_483_100000_0.01558_0.92286_0.01916.png
                gene_name: UBE2A
               theta_stop: 0.099 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.018 
    ci_joint_bounds_right: 0.020 

Current progress: 86 percent done.
UBE2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.599742e-02	ci left: 6.853663e-01	ci right 7.035203e-01	k: 6945	n:10000
KS ci ratio: 2.803301e-02	ci left: 6.522301e-01	ci right 6.708757e-01	k: 6616	n:10000
UBE2B   10000 perm   1 sec   (6997 perm/sec)   p_kst 6.616000e-01   p_cons 6.945000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UBE2B.2_483_10000_0.6616_0.6945_1.png
                gene_name: UBE2B
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
UBE2C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.001251e-01	ci left: 1.262063e-01	ci right 1.396083e-01	k: 1328	n:10000
Cons ci ratio: 2.532304e-01	ci left: 2.043278e-02	ci right 2.644926e-02	k: 233	n:10000
KS ci ratio: 6.339341e-02	ci left: 2.677498e-01	ci right 2.853805e-01	k: 2765	n:10000
UBE2C   10000 perm   1 sec   (7189 perm/sec)   p_kst 2.765000e-01   p_cons 2.330000e-02   p_joint 1.328000e-01

Joint ci ratio: 5.252094e-02	ci left: 2.120960e-01	ci right 2.235861e-01	k: 4356	n:20000
Cons ci ratio: 1.843791e-01	ci left: 2.005956e-02	ci right 2.418100e-02	k: 441	n:20000
KS ci ratio: 4.459212e-02	ci left: 2.724440e-01	ci right 2.849204e-01	k: 5573	n:20000
UBE2C   20000 perm   3 sec   (6302 perm/sec)   p_kst 2.786500e-01   p_cons 2.205000e-02   p_joint 2.178000e-01

Joint ci ratio: 6.183514e-02	ci left: 1.144685e-01	ci right 1.218056e-01	k: 3543	n:30000
Cons ci ratio: 1.501990e-01	ci left: 2.053041e-02	ci right 2.389633e-02	k: 665	n:30000
KS ci ratio: 3.643959e-02	ci left: 2.732668e-01	ci right 2.834428e-01	k: 8350	n:30000
UBE2C   30000 perm   5 sec   (5945 perm/sec)   p_kst 2.783333e-01   p_cons 2.216667e-02   p_joint 1.181000e-01

Joint ci ratio: 7.133090e-02	ci left: 6.769048e-02	ci right 7.272213e-02	k: 2807	n:40000
Cons ci ratio: 1.325399e-01	ci left: 1.997997e-02	ci right 2.284010e-02	k: 855	n:40000
KS ci ratio: 3.143958e-02	ci left: 2.754542e-01	ci right 2.842778e-01	k: 11194	n:40000
UBE2C   40000 perm   7 sec   (5685 perm/sec)   p_kst 2.798500e-01   p_cons 2.137500e-02   p_joint 7.017500e-02

Joint ci ratio: 6.418476e-02	ci left: 6.718751e-02	ci right 7.166264e-02	k: 3470	n:50000
Cons ci ratio: 1.208170e-01	ci left: 1.937287e-02	ci right 2.188322e-02	k: 1030	n:50000
KS ci ratio: 2.813404e-02	ci left: 2.757288e-01	ci right 2.836168e-01	k: 13983	n:50000
UBE2C   50000 perm   9 sec   (5500 perm/sec)   p_kst 2.796600e-01   p_cons 2.060000e-02   p_joint 6.940000e-02

Joint ci ratio: 7.782692e-02	ci left: 3.898566e-02	ci right 4.215897e-02	k: 2433	n:60000
Cons ci ratio: 1.101633e-01	ci left: 1.952700e-02	ci right 2.181969e-02	k: 1239	n:60000
KS ci ratio: 2.567511e-02	ci left: 2.761939e-01	ci right 2.833941e-01	k: 16787	n:60000
UBE2C   60000 perm   11 sec   (5363 perm/sec)   p_kst 2.797833e-01   p_cons 2.065000e-02   p_joint 4.055000e-02

Joint ci ratio: 8.577588e-02	ci left: 2.772734e-02	ci right 3.022619e-02	k: 2027	n:70000
Cons ci ratio: 1.024505e-01	ci left: 1.943518e-02	ci right 2.154768e-02	k: 1433	n:70000
KS ci ratio: 2.369829e-02	ci left: 2.776864e-01	ci right 2.843603e-01	k: 19671	n:70000
UBE2C   70000 perm   14 sec   (5147 perm/sec)   p_kst 2.810143e-01   p_cons 2.047143e-02   p_joint 2.895714e-02

Joint ci ratio: 8.000023e-02	ci left: 2.797060e-02	ci right 3.031371e-02	k: 2330	n:80000
Cons ci ratio: 9.591911e-02	ci left: 1.946820e-02	ci right 2.144179e-02	k: 1635	n:80000
KS ci ratio: 2.212001e-02	ci left: 2.787715e-01	ci right 2.850193e-01	k: 22551	n:80000
UBE2C   80000 perm   16 sec   (5048 perm/sec)   p_kst 2.818875e-01   p_cons 2.043750e-02   p_joint 2.912500e-02

Outputting figure to mutsig2_images.part000000000185/UBE2C.2_715_80000_0.28189_0.020438_0.029125.png
                gene_name: UBE2C
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.030 

Current progress: 90 percent done.
UBE2CBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.569174e-02	ci left: 3.219758e-01	ci right 3.405226e-01	k: 3312	n:10000
Cons ci ratio: 1.057003e-01	ci left: 1.144737e-01	ci right 1.273481e-01	k: 1208	n:10000
KS ci ratio: 6.041024e-02	ci left: 2.872616e-01	ci right 3.052572e-01	k: 2962	n:10000
UBE2CBP   10000 perm   1 sec   (6754 perm/sec)   p_kst 2.962000e-01   p_cons 1.208000e-01   p_joint 3.312000e-01

Joint ci ratio: 5.797613e-02	ci left: 1.806283e-01	ci right 1.914631e-01	k: 3720	n:20000
Cons ci ratio: 7.374025e-02	ci left: 1.192162e-01	ci right 1.283935e-01	k: 2475	n:20000
KS ci ratio: 4.306753e-02	ci left: 2.865486e-01	ci right 2.992116e-01	k: 5857	n:20000
UBE2CBP   20000 perm   3 sec   (5927 perm/sec)   p_kst 2.928500e-01   p_cons 1.237500e-01   p_joint 1.860000e-01

Outputting figure to mutsig2_images.part000000000185/UBE2CBP.2_1210_20000_0.29285_0.12375_0.186.png
                gene_name: UBE2CBP
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 92 percent done.
UBE2G1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.346348e-02	ci left: 5.686497e-01	ci right 5.881046e-01	k: 5784	n:10000
KS ci ratio: 2.106725e-02	ci left: 7.675975e-01	ci right 7.840416e-01	k: 7759	n:10000
UBE2G1   10000 perm   1 sec   (6841 perm/sec)   p_kst 7.759000e-01   p_cons 5.784000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UBE2G1.2_533_10000_0.7759_0.5784_1.png
                gene_name: UBE2G1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
UBE2I
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.694647e-02	ci left: 5.196599e-01	ci right 5.393230e-01	k: 5295	n:10000
Cons ci ratio: 7.812958e-02	ci left: 1.931834e-01	ci right 2.089911e-01	k: 2010	n:10000
KS ci ratio: 2.399040e-02	ci left: 7.186579e-01	ci right 7.362094e-01	k: 7275	n:10000
UBE2I   10000 perm   1 sec   (7010 perm/sec)   p_kst 7.275000e-01   p_cons 2.010000e-01   p_joint 5.295000e-01

Outputting figure to mutsig2_images.part000000000185/UBE2I.2_501_10000_0.7275_0.201_0.5295.png
                gene_name: UBE2I
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 96 percent done.
UBE2L3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.005619e-01	ci left: 1.252279e-01	ci right 1.385873e-01	k: 1318	n:10000
KS ci ratio: 7.325487e-02	ci left: 2.143797e-01	ci right 2.307822e-01	k: 2225	n:10000
UBE2L3   10000 perm   1 sec   (7214 perm/sec)   p_kst 2.225000e-01   p_cons 1.318000e-01   p_joint 1

Joint ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
Cons ci ratio: 7.146855e-02	ci left: 1.260574e-01	ci right 1.354502e-01	k: 2614	n:20000
KS ci ratio: 5.166524e-02	ci left: 2.176924e-01	ci right 2.292881e-01	k: 4469	n:20000
UBE2L3   20000 perm   3 sec   (6367 perm/sec)   p_kst 2.234500e-01   p_cons 1.307000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000185/UBE2L3.2_481_20000_0.22345_0.1307_1.png
                gene_name: UBE2L3
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
UBE2O
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.089368e-01	ci left: 3.043932e-02	ci right 3.763545e-02	k: 339	n:10000
Cons ci ratio: 2.657053e-01	ci left: 1.846678e-02	ci right 2.421679e-02	k: 212	n:10000
KS ci ratio: 2.466887e-02	ci left: 7.073525e-01	ci right 7.251214e-01	k: 7163	n:10000
UBE2O   10000 perm   2 sec   (5381 perm/sec)   p_kst 7.163000e-01   p_cons 2.120000e-02   p_joint 3.390000e-02

Joint ci ratio: 1.915958e-01	ci left: 1.853343e-02	ci right 2.250769e-02	k: 409	n:20000
Cons ci ratio: 1.927994e-01	ci left: 1.829524e-02	ci right 2.224596e-02	k: 404	n:20000
KS ci ratio: 1.754050e-02	ci left: 7.077318e-01	ci right 7.203059e-01	k: 14281	n:20000
UBE2O   20000 perm   4 sec   (4805 perm/sec)   p_kst 7.140500e-01   p_cons 2.020000e-02   p_joint 2.045000e-02

Joint ci ratio: 1.550290e-01	ci left: 1.924700e-02	ci right 2.251338e-02	k: 625	n:30000
Cons ci ratio: 1.561795e-01	ci left: 1.895846e-02	ci right 2.220199e-02	k: 616	n:30000
KS ci ratio: 1.430258e-02	ci left: 7.094524e-01	ci right 7.197060e-01	k: 21438	n:30000
UBE2O   30000 perm   7 sec   (4590 perm/sec)   p_kst 7.146000e-01   p_cons 2.053333e-02   p_joint 2.083333e-02

Joint ci ratio: 1.355647e-01	ci left: 1.908539e-02	ci right 2.188483e-02	k: 818	n:40000
Cons ci ratio: 1.365898e-01	ci left: 1.879541e-02	ci right 2.157486e-02	k: 806	n:40000
KS ci ratio: 1.238265e-02	ci left: 7.102720e-01	ci right 7.191468e-01	k: 28589	n:40000
UBE2O   40000 perm   9 sec   (4448 perm/sec)   p_kst 7.147250e-01   p_cons 2.015000e-02   p_joint 2.045000e-02

Joint ci ratio: 1.217243e-01	ci left: 1.908180e-02	ci right 2.157433e-02	k: 1015	n:50000
Cons ci ratio: 1.225268e-01	ci left: 1.882959e-02	ci right 2.130657e-02	k: 1002	n:50000
KS ci ratio: 1.104567e-02	ci left: 7.118442e-01	ci right 7.197707e-01	k: 35791	n:50000
UBE2O   50000 perm   12 sec   (4340 perm/sec)   p_kst 7.158200e-01   p_cons 2.004000e-02   p_joint 2.030000e-02

Joint ci ratio: 1.112212e-01	ci left: 1.915408e-02	ci right 2.142599e-02	k: 1216	n:60000
Cons ci ratio: 1.119273e-01	ci left: 1.891092e-02	ci right 2.116917e-02	k: 1201	n:60000
KS ci ratio: 1.007015e-02	ci left: 7.127244e-01	ci right 7.199546e-01	k: 42981	n:60000
UBE2O   60000 perm   14 sec   (4246 perm/sec)   p_kst 7.163500e-01   p_cons 2.001667e-02   p_joint 2.026667e-02

Joint ci ratio: 1.034867e-01	ci left: 1.904529e-02	ci right 2.113762e-02	k: 1405	n:70000
Cons ci ratio: 1.040545e-01	ci left: 1.883646e-02	ci right 2.091789e-02	k: 1390	n:70000
KS ci ratio: 9.315458e-03	ci left: 7.133316e-01	ci right 7.200219e-01	k: 50168	n:70000
UBE2O   70000 perm   17 sec   (4164 perm/sec)   p_kst 7.166857e-01   p_cons 1.985714e-02   p_joint 2.007143e-02

Joint ci ratio: 9.676790e-02	ci left: 1.912647e-02	ci right 2.108355e-02	k: 1607	n:80000
Cons ci ratio: 9.723173e-02	ci left: 1.894344e-02	ci right 2.089160e-02	k: 1592	n:80000
KS ci ratio: 8.687502e-03	ci left: 7.147800e-01	ci right 7.210292e-01	k: 57433	n:80000
UBE2O   80000 perm   20 sec   (4092 perm/sec)   p_kst 7.179125e-01   p_cons 1.990000e-02   p_joint 2.008750e-02

Outputting figure to mutsig2_images.part000000000185/UBE2O.2_3951_80000_0.71791_0.0199_0.020088.png
                gene_name: UBE2O
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.021 
                  p_joint: 0.020 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.021 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000185
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 185 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1431>
Subject: Job 9894197: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1431>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000186> was used as the working directory.
Started at Sat Oct  6 00:34:43 2012
Results reported at Sat Oct  6 00:58:33 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000186.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000186.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 186  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000186.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1602.95 sec.
    Max Memory :      3608 MB
    Max Swap   :      6118 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
186
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 186
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 186: processing genes 16679 - 16768
Calculating significance of each gene.
Using projection method.
16679	UBE3A	1.530104e-01
16680	UBE3B	7.544305e-01
16681	UBE3C	3.191702e-01
16682	UBE4A	2.622425e-01
16683	UBE4B	1.692166e-01
16684	UBFD1	7.910017e-01
16685	UBIAD1	6.899424e-01
16686	UBL3	1.651752e-01
16687	UBL4A	1
16688	UBL4B	6.367557e-01
16689	UBL5	1
16690	UBL7	7.507202e-01
16691	UBLCP1	2.226632e-01
16692	UBN1	1.343325e-01
16693	UBN2	6.120609e-01
16694	UBOX5	6.757912e-01
16695	UBP1	6.427908e-02
16696	UBQLN1	8.850854e-01
16697	UBQLN2	7.425096e-01
16698	UBQLN3	5.780814e-02
16699	UBQLN4	1
16700	UBQLNL	7.775375e-03
16701	UBR1	3.178593e-01
In gene UBR2 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 5456    n = 1	mu =   8.55e-07
16702	UBR2	2.807510e-01
16703	UBR3	1.871427e-01
16704	UBR4	9.828044e-01
16705	UBR5	4.486393e-01
16706	UBR7	6.784892e-01
16707	UBTD1	1.821723e-01
16708	UBTD2	2.612510e-01
16709	UBTF	6.116377e-01
16710	UBXN1	1
16711	UBXN10	4.237318e-01
16712	UBXN11	9.794371e-02
16713	UBXN2A	1.133838e-01
16714	UBXN2B	3.539227e-01
16715	UBXN4	1.023030e-01
16716	UBXN6	6.674901e-01
16717	UBXN7	3.688616e-01
16718	UBXN8	1
16719	UCHL1	2.676783e-01
16720	UCHL3	3.994102e-01
16721	UCHL5	4.597548e-01
16722	UCK1	1
16723	UCK2	6.533374e-01
16724	UCKL1	1
16725	UCMA	4.362909e-01
16726	UCN	1
16727	UCN2	1
16728	UCN3	4.353562e-01
16729	UCP1	6.948649e-01
16730	UCP2	6.872614e-01
16731	UCP3	5.601872e-01
16732	UEVLD	8.506422e-01
16733	UFC1	1
16734	UFD1L	5.298830e-01
16735	UFM1	1
16736	UFSP1	1
16737	UFSP2	7.040962e-01
16738	UGCG	3.607637e-01
16739	UGDH	1.595629e-01
16740	UGGT1	5.277215e-01
16741	UGGT2	1.091183e-03
16742	UGP2	1.745708e-02
16743	UGT1A1	8.822660e-01
16744	UGT1A10	8.699088e-01
16745	UGT1A3	7.552276e-01
16746	UGT1A4	4.328884e-01
16747	UGT1A5	3.428094e-01
16748	UGT1A6	9.522062e-01
16749	UGT1A7	8.316380e-01
16750	UGT1A8	8.950896e-01
16751	UGT1A9	1.433118e-01
16752	UGT2A1	8.766975e-03
16753	UGT2A2	1
16754	UGT2A3	5.475817e-02
16755	UGT2B10	8.611210e-01
16756	UGT2B11	5.619386e-01
16757	UGT2B15	3.300620e-01
16758	UGT2B17	1.749134e-01
16759	UGT2B28	3.989784e-01
16760	UGT2B4	2.858006e-01
16761	UGT2B7	9.156905e-02
16762	UGT3A1	2.155546e-02
16763	UGT3A2	1.466752e-01
16764	UGT8	1.569390e-02
16765	UHMK1	3.635178e-01
16766	UHRF1	8.786972e-01
16767	UHRF1BP1	3.729916e-01
16768	UHRF1BP1L	4.151290e-01
Done

Running MutSig 2:
Scatter job 186: processing genes 16679 - 16768
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
UBR4
Processing conservation and coverage...
62% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.558774e-02	ci left: 6.921210e-01	ci right 7.101617e-01	k: 7012	n:10000
Cons ci ratio: 7.714643e-02	ci left: 1.972229e-01	ci right 2.131492e-01	k: 2051	n:10000
KS ci ratio: 1.794921e-02	ci left: 8.191366e-01	ci right 8.340726e-01	k: 8267	n:10000
UBR4   10000 perm   5 sec   (1844 perm/sec)   p_kst 8.267000e-01   p_cons 2.051000e-01   p_joint 7.012000e-01

Outputting figure to mutsig2_images.part000000000186/UBR4.17_15976_10000_0.8267_0.2051_0.7012.png
                gene_name: UBR4
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 2 percent done.
UBR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.492999e-02	ci left: 7.030138e-01	ci right 7.208626e-01	k: 7120	n:10000
KS ci ratio: 1.550859e-02	ci left: 8.578398e-01	ci right 8.713470e-01	k: 8647	n:10000
UBR2   10000 perm   3 sec   (3724 perm/sec)   p_kst 8.647000e-01   p_cons 7.120000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UBR2.13_5602_10000_0.8647_0.712_1.png
                gene_name: UBR2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
UGGT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.363528e-02	ci left: 5.661428e-01	ci right 5.856130e-01	k: 5759	n:10000
Cons ci ratio: 5.896462e-02	ci left: 2.973720e-01	ci right 3.155408e-01	k: 3064	n:10000
KS ci ratio: 4.902580e-02	ci left: 3.803239e-01	ci right 3.995402e-01	k: 3899	n:10000
UGGT2   10000 perm   3 sec   (3443 perm/sec)   p_kst 3.899000e-01   p_cons 3.064000e-01   p_joint 5.759000e-01

Outputting figure to mutsig2_images.part000000000186/UGGT2.13_4707_10000_0.3899_0.3064_0.5759.png
                gene_name: UGGT2
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 5 percent done.
UBR5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.686766e-02	ci left: 8.365345e-01	ci right 8.508647e-01	k: 8438	n:10000
Cons ci ratio: 3.124198e-02	ci left: 6.018656e-01	ci right 6.210694e-01	k: 6115	n:10000
KS ci ratio: 1.985145e-02	ci left: 7.878649e-01	ci right 8.037624e-01	k: 7959	n:10000
UBR5   10000 perm   4 sec   (2807 perm/sec)   p_kst 7.959000e-01   p_cons 6.115000e-01   p_joint 8.438000e-01

Outputting figure to mutsig2_images.part000000000186/UBR5.12_8636_10000_0.7959_0.6115_0.8438.png
                gene_name: UBR5
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 7 percent done.
UBE3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.377898e-02	ci left: 4.351271e-01	ci right 4.547050e-01	k: 4449	n:10000
Cons ci ratio: 2.322591e-03	ci left: 9.952521e-01	ci right 9.976443e-01	k: 9966	n:10000
KS ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
UBE3A   10000 perm   2 sec   (4920 perm/sec)   p_kst 2.945000e-01   p_cons 9.966000e-01   p_joint 4.449000e-01

Outputting figure to mutsig2_images.part000000000186/UBE3A.11_2696_10000_0.2945_0.9966_0.4449.png
                gene_name: UBE3A
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 8 percent done.
UGGT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.561906e-02	ci left: 2.037281e-01	ci right 2.198401e-01	k: 2117	n:10000
Cons ci ratio: 2.413562e-02	ci left: 7.162348e-01	ci right 7.338340e-01	k: 7251	n:10000
KS ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
UGGT1   10000 perm   2 sec   (4084 perm/sec)   p_kst 1.336000e-01   p_cons 7.251000e-01   p_joint 2.117000e-01

Outputting figure to mutsig2_images.part000000000186/UGGT1.11_4832_10000_0.1336_0.7251_0.2117.png
                gene_name: UGGT1
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 10 percent done.
UBE3C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.826473e-02	ci left: 3.024292e-01	ci right 3.206807e-01	k: 3115	n:10000
Cons ci ratio: 3.673940e-02	ci left: 5.224624e-01	ci right 5.421187e-01	k: 5323	n:10000
KS ci ratio: 7.584626e-02	ci left: 2.027423e-01	ci right 2.188265e-01	k: 2107	n:10000
UBE3C   10000 perm   2 sec   (4368 perm/sec)   p_kst 2.107000e-01   p_cons 5.323000e-01   p_joint 3.115000e-01

Outputting figure to mutsig2_images.part000000000186/UBE3C.9_3344_10000_0.2107_0.5323_0.3115.png
                gene_name: UBE3C
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 12 percent done.
UBE4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.621032e-02	ci left: 8.469262e-01	ci right 8.608669e-01	k: 8540	n:10000
Cons ci ratio: 5.588080e-02	ci left: 3.204868e-01	ci right 3.390125e-01	k: 3297	n:10000
KS ci ratio: 1.477842e-02	ci left: 8.689718e-01	ci right 8.820086e-01	k: 8756	n:10000
UBE4B   10000 perm   3 sec   (3880 perm/sec)   p_kst 8.756000e-01   p_cons 3.297000e-01   p_joint 8.540000e-01

Outputting figure to mutsig2_images.part000000000186/UBE4B.9_4021_10000_0.8756_0.3297_0.854.png
                gene_name: UBE4B
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 13 percent done.
UBQLN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.339508e-03	ci left: 9.713246e-01	ci right 9.775949e-01	k: 9746	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
UBQLN3   10000 perm   2 sec   (5463 perm/sec)   p_kst 1   p_cons 9.746000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UBQLN3.9_1972_10000_1_0.9746_1.png
                gene_name: UBQLN3
               theta_stop: 0.0063 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
UBR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.507050e-02	ci left: 1.383491e-01	ci right 1.522583e-01	k: 1452	n:10000
Cons ci ratio: 1.617132e-02	ci left: 8.475379e-01	ci right 8.614549e-01	k: 8546	n:10000
KS ci ratio: 1.551513e-01	ci left: 5.532768e-02	ci right 6.473065e-02	k: 599	n:10000
UBR1   10000 perm   3 sec   (3819 perm/sec)   p_kst 5.990000e-02   p_cons 8.546000e-01   p_joint 1.452000e-01

Joint ci ratio: 8.387830e-02	ci left: 9.430561e-02	ci right 1.026115e-01	k: 1968	n:20000
Cons ci ratio: 1.142948e-02	ci left: 8.497395e-01	ci right 8.595572e-01	k: 17094	n:20000
KS ci ratio: 1.120645e-01	ci left: 5.441054e-02	ci right 6.091881e-02	k: 1152	n:20000
UBR1   20000 perm   6 sec   (3457 perm/sec)   p_kst 5.760000e-02   p_cons 8.547000e-01   p_joint 9.840000e-02

Joint ci ratio: 7.134208e-02	ci left: 8.816204e-02	ci right 9.471733e-02	k: 2742	n:30000
Cons ci ratio: 9.490388e-03	ci left: 8.463807e-01	ci right 8.544846e-01	k: 25514	n:30000
KS ci ratio: 9.095804e-02	ci left: 5.564217e-02	ci right 6.097710e-02	k: 1748	n:30000
UBR1   30000 perm   9 sec   (3323 perm/sec)   p_kst 5.826667e-02   p_cons 8.504667e-01   p_joint 9.140000e-02

Outputting figure to mutsig2_images.part000000000186/UBR1.9_5438_30000_0.058267_0.85047_0.0914.png
                gene_name: UBR1
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.058 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.061 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.095 

Current progress: 17 percent done.
UBN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.108764e-01	ci left: 1.049071e-01	ci right 1.173205e-01	k: 1110	n:10000
Cons ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
KS ci ratio: 1.056506e-01	ci left: 1.145714e-01	ci right 1.274503e-01	k: 1209	n:10000
UBN1   10000 perm   2 sec   (4219 perm/sec)   p_kst 1.209000e-01   p_cons 5.500000e-02   p_joint 1.110000e-01

Joint ci ratio: 9.546324e-02	ci left: 7.402653e-02	ci right 8.149677e-02	k: 1554	n:20000
Cons ci ratio: 1.113996e-01	ci left: 5.504340e-02	ci right 6.158575e-02	k: 1165	n:20000
KS ci ratio: 7.550851e-02	ci left: 1.142482e-01	ci right 1.232630e-01	k: 2374	n:20000
UBN1   20000 perm   5 sec   (3872 perm/sec)   p_kst 1.187000e-01   p_cons 5.825000e-02   p_joint 7.770000e-02

Joint ci ratio: 8.780254e-02	ci left: 5.955813e-02	ci right 6.506034e-02	k: 1868	n:30000
Cons ci ratio: 9.008614e-02	ci left: 5.668609e-02	ci right 6.206630e-02	k: 1780	n:30000
KS ci ratio: 6.186484e-02	ci left: 1.143699e-01	ci right 1.217043e-01	k: 3540	n:30000
UBN1   30000 perm   8 sec   (3730 perm/sec)   p_kst 1.180000e-01   p_cons 5.933333e-02   p_joint 6.226667e-02

Outputting figure to mutsig2_images.part000000000186/UBN1.8_3473_30000_0.118_0.059333_0.062267.png
                gene_name: UBN1
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.065 

Current progress: 18 percent done.
UBR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.111979e-01	ci left: 2.977507e-02	ci right 3.690017e-02	k: 332	n:10000
Cons ci ratio: 2.175058e-02	ci left: 7.561585e-01	ci right 7.728871e-01	k: 7646	n:10000
KS ci ratio: 6.264461e-01	ci left: 2.690467e-03	ci right 5.212103e-03	k: 38	n:10000
UBR3   10000 perm   3 sec   (3497 perm/sec)   p_kst 3.800000e-03   p_cons 7.646000e-01   p_joint 3.320000e-02

Joint ci ratio: 1.989008e-01	ci left: 1.715307e-02	ci right 2.098856e-02	k: 380	n:20000
Cons ci ratio: 1.567675e-02	ci left: 7.516491e-01	ci right 7.635759e-01	k: 15153	n:20000
KS ci ratio: 4.548356e-01	ci left: 2.862076e-03	ci right 4.587170e-03	k: 73	n:20000
UBR3   20000 perm   6 sec   (3237 perm/sec)   p_kst 3.650000e-03   p_cons 7.576500e-01   p_joint 1.900000e-02

Joint ci ratio: 1.491714e-01	ci left: 2.081941e-02	ci right 2.420727e-02	k: 674	n:30000
Cons ci ratio: 1.269605e-02	ci left: 7.557631e-01	ci right 7.654530e-01	k: 22819	n:30000
KS ci ratio: 3.747790e-01	ci left: 2.954057e-03	ci right 4.344801e-03	k: 108	n:30000
UBR3   30000 perm   10 sec   (3124 perm/sec)   p_kst 3.600000e-03   p_cons 7.606333e-01   p_joint 2.246667e-02

Joint ci ratio: 1.571075e-01	ci left: 1.411992e-02	ci right 1.655118e-02	k: 612	n:40000
Cons ci ratio: 1.100215e-02	ci left: 7.561857e-01	ci right 7.645764e-01	k: 30416	n:40000
KS ci ratio: 3.083131e-01	ci left: 3.405185e-03	ci right 4.668493e-03	k: 160	n:40000
UBR3   40000 perm   13 sec   (3046 perm/sec)   p_kst 4.000000e-03   p_cons 7.604000e-01   p_joint 1.530000e-02

Joint ci ratio: 1.596080e-01	ci left: 1.096795e-02	ci right 1.288934e-02	k: 595	n:50000
Cons ci ratio: 9.989113e-03	ci left: 7.511049e-01	ci right 7.586654e-01	k: 37745	n:50000
KS ci ratio: 2.861194e-01	ci left: 3.205375e-03	ci right 4.293492e-03	k: 186	n:50000
UBR3   50000 perm   17 sec   (2991 perm/sec)   p_kst 3.720000e-03   p_cons 7.549000e-01   p_joint 1.190000e-02

Joint ci ratio: 1.340591e-01	ci left: 1.310736e-02	ci right 1.500674e-02	k: 842	n:60000
Cons ci ratio: 9.079759e-03	ci left: 7.530284e-01	ci right 7.599135e-01	k: 45389	n:60000
KS ci ratio: 2.608407e-01	ci left: 3.261149e-03	ci right 4.254469e-03	k: 224	n:60000
UBR3   60000 perm   20 sec   (2937 perm/sec)   p_kst 3.733333e-03   p_cons 7.564833e-01   p_joint 1.403333e-02

Joint ci ratio: 1.304856e-01	ci left: 1.189741e-02	ci right 1.357191e-02	k: 890	n:70000
Cons ci ratio: 8.368687e-03	ci left: 7.549386e-01	ci right 7.612972e-01	k: 53069	n:70000
KS ci ratio: 2.408022e-01	ci left: 3.317453e-03	ci right 4.238719e-03	k: 263	n:70000
UBR3   70000 perm   24 sec   (2900 perm/sec)   p_kst 3.757143e-03   p_cons 7.581286e-01   p_joint 1.271429e-02

Joint ci ratio: 1.239386e-01	ci left: 1.158405e-02	ci right 1.312662e-02	k: 987	n:80000
Cons ci ratio: 7.832269e-03	ci left: 7.549538e-01	ci right 7.609025e-01	k: 60635	n:80000
KS ci ratio: 2.243984e-01	ci left: 3.373678e-03	ci right 4.237920e-03	k: 303	n:80000
UBR3   80000 perm   28 sec   (2869 perm/sec)   p_kst 3.787500e-03   p_cons 7.579375e-01   p_joint 1.233750e-02

Joint ci ratio: 1.356006e-01	ci left: 8.575811e-03	ci right 9.833906e-03	k: 827	n:90000
Cons ci ratio: 7.242828e-03	ci left: 7.621824e-01	ci right 7.677339e-01	k: 68847	n:90000
KS ci ratio: 2.150649e-01	ci left: 3.282302e-03	ci right 4.083545e-03	k: 330	n:90000
UBR3   90000 perm   32 sec   (2833 perm/sec)   p_kst 3.666667e-03   p_cons 7.649667e-01   p_joint 9.188889e-03

Joint ci ratio: 1.365814e-01	ci left: 7.611714e-03	ci right 8.737094e-03	k: 816	n:100000
Cons ci ratio: 6.872806e-03	ci left: 7.622390e-01	ci right 7.675057e-01	k: 76488	n:100000
KS ci ratio: 2.082709e-01	ci left: 3.162390e-03	ci right 3.906864e-03	k: 352	n:100000
UBR3   100000 perm   36 sec   (2794 perm/sec)   p_kst 3.520000e-03   p_cons 7.648800e-01   p_joint 8.160000e-03

Joint ci ratio: 1.143368e-01	ci left: 9.967861e-03	ci right 1.118542e-02	k: 1162	n:110000
Cons ci ratio: 6.553759e-03	ci left: 7.623186e-01	ci right 7.673401e-01	k: 84132	n:110000
KS ci ratio: 1.983993e-01	ci left: 3.185521e-03	ci right 3.895597e-03	k: 388	n:110000
UBR3   110000 perm   40 sec   (2767 perm/sec)   p_kst 3.527273e-03   p_cons 7.648364e-01   p_joint 1.056364e-02

Joint ci ratio: 1.149379e-01	ci left: 9.047919e-03	ci right 1.015931e-02	k: 1151	n:120000
Cons ci ratio: 6.275962e-03	ci left: 7.623563e-01	ci right 7.671642e-01	k: 91772	n:120000
KS ci ratio: 1.911691e-01	ci left: 3.157867e-03	ci right 3.833145e-03	k: 418	n:120000
UBR3   120000 perm   44 sec   (2735 perm/sec)   p_kst 3.483333e-03   p_cons 7.647667e-01   p_joint 9.591667e-03

Joint ci ratio: 1.117010e-01	ci left: 8.860128e-03	ci right 9.915776e-03	k: 1219	n:130000
Cons ci ratio: 6.029062e-03	ci left: 7.624925e-01	ci right 7.671111e-01	k: 99425	n:130000
KS ci ratio: 1.820499e-01	ci left: 3.230290e-03	ci right 3.884471e-03	k: 461	n:130000
UBR3   130000 perm   48 sec   (2707 perm/sec)   p_kst 3.546154e-03   p_cons 7.648077e-01   p_joint 9.376923e-03

Joint ci ratio: 1.100673e-01	ci left: 8.484126e-03	ci right 9.479228e-03	k: 1256	n:140000
Cons ci ratio: 5.815410e-03	ci left: 7.622253e-01	ci right 7.666780e-01	k: 107024	n:140000
KS ci ratio: 1.755230e-01	ci left: 3.238370e-03	ci right 3.868182e-03	k: 496	n:140000
UBR3   140000 perm   52 sec   (2674 perm/sec)   p_kst 3.542857e-03   p_cons 7.644571e-01   p_joint 8.971429e-03

Joint ci ratio: 1.004698e-01	ci left: 9.541635e-03	ci right 1.055744e-02	k: 1506	n:150000
Cons ci ratio: 5.619319e-03	ci left: 7.622306e-01	ci right 7.665325e-01	k: 114658	n:150000
KS ci ratio: 1.690149e-01	ci left: 3.271276e-03	ci right 3.881494e-03	k: 535	n:150000
UBR3   150000 perm   57 sec   (2641 perm/sec)   p_kst 3.566667e-03   p_cons 7.643867e-01   p_joint 1.004000e-02

Joint ci ratio: 1.033796e-01	ci left: 8.445596e-03	ci right 9.372331e-03	k: 1424	n:160000
Cons ci ratio: 5.444646e-03	ci left: 7.620494e-01	ci right 7.662160e-01	k: 122262	n:160000
KS ci ratio: 1.721221e-01	ci left: 2.953098e-03	ci right 3.515141e-03	k: 516	n:160000
UBR3   160000 perm   61 sec   (2614 perm/sec)   p_kst 3.225000e-03   p_cons 7.641375e-01   p_joint 8.900000e-03

Joint ci ratio: 1.020788e-01	ci left: 8.160789e-03	ci right 9.044327e-03	k: 1461	n:170000
Cons ci ratio: 5.281770e-03	ci left: 7.621334e-01	ci right 7.661753e-01	k: 129907	n:170000
KS ci ratio: 1.673367e-01	ci left: 2.948361e-03	ci right 3.492329e-03	k: 546	n:170000
UBR3   170000 perm   66 sec   (2584 perm/sec)   p_kst 3.211765e-03   p_cons 7.641588e-01   p_joint 8.594118e-03

Joint ci ratio: 1.071711e-01	ci left: 6.982206e-03	ci right 7.778228e-03	k: 1327	n:180000
Cons ci ratio: 5.138226e-03	ci left: 7.618196e-01	ci right 7.657496e-01	k: 137482	n:180000
KS ci ratio: 1.622259e-01	ci left: 2.970992e-03	ci right 3.500762e-03	k: 581	n:180000
UBR3   180000 perm   70 sec   (2557 perm/sec)   p_kst 3.227778e-03   p_cons 7.637889e-01   p_joint 7.372222e-03

Joint ci ratio: 1.062297e-01	ci left: 6.737621e-03	ci right 7.498586e-03	k: 1351	n:190000
Cons ci ratio: 5.005551e-03	ci left: 7.615563e-01	ci right 7.653831e-01	k: 145060	n:190000
KS ci ratio: 1.593808e-01	ci left: 2.920697e-03	ci right 3.431490e-03	k: 602	n:190000
UBR3   190000 perm   75 sec   (2528 perm/sec)   p_kst 3.168421e-03   p_cons 7.634737e-01   p_joint 7.110526e-03

Joint ci ratio: 1.005300e-01	ci left: 7.165532e-03	ci right 7.928845e-03	k: 1508	n:200000
Cons ci ratio: 4.876831e-03	ci left: 7.617517e-01	ci right 7.654807e-01	k: 152724	n:200000
KS ci ratio: 1.551904e-01	ci left: 2.933170e-03	ci right 3.431402e-03	k: 635	n:200000
UBR3   200000 perm   80 sec   (2498 perm/sec)   p_kst 3.175000e-03   p_cons 7.636200e-01   p_joint 7.540000e-03

Joint ci ratio: 9.361158e-02	ci left: 7.893129e-03	ci right 8.672916e-03	k: 1738	n:210000
Cons ci ratio: 4.758308e-03	ci left: 7.618723e-01	ci right 7.655109e-01	k: 160376	n:210000
KS ci ratio: 1.514276e-01	ci left: 2.940031e-03	ci right 3.426223e-03	k: 667	n:210000
UBR3   210000 perm   85 sec   (2460 perm/sec)   p_kst 3.176190e-03   p_cons 7.636952e-01   p_joint 8.276190e-03

Joint ci ratio: 9.163215e-02	ci left: 7.871799e-03	ci right 8.632152e-03	k: 1814	n:220000
Cons ci ratio: 4.651012e-03	ci left: 7.617505e-01	ci right 7.653062e-01	k: 167977	n:220000
KS ci ratio: 1.485659e-01	ci left: 2.920138e-03	ci right 3.393103e-03	k: 693	n:220000
UBR3   220000 perm   90 sec   (2434 perm/sec)   p_kst 3.150000e-03   p_cons 7.635318e-01   p_joint 8.245455e-03

Joint ci ratio: 9.164873e-02	ci left: 7.529486e-03	ci right 8.256911e-03	k: 1814	n:230000
Cons ci ratio: 4.549290e-03	ci left: 7.617492e-01	ci right 7.652268e-01	k: 175603	n:230000
KS ci ratio: 1.460643e-01	ci left: 2.893674e-03	ci right 3.353772e-03	k: 717	n:230000
UBR3   230000 perm   96 sec   (2407 perm/sec)   p_kst 3.117391e-03   p_cons 7.634913e-01   p_joint 7.886957e-03

Joint ci ratio: 9.202221e-02	ci left: 7.158701e-03	ci right 7.853273e-03	k: 1800	n:240000
Cons ci ratio: 4.455452e-03	ci left: 7.616276e-01	ci right 7.650327e-01	k: 183200	n:240000
KS ci ratio: 1.432979e-01	ci left: 2.885547e-03	ci right 3.334920e-03	k: 745	n:240000
UBR3   240000 perm   101 sec   (2382 perm/sec)   p_kst 3.104167e-03   p_cons 7.633333e-01   p_joint 7.500000e-03

Joint ci ratio: 9.129864e-02	ci left: 6.985665e-03	ci right 7.657833e-03	k: 1829	n:250000
Cons ci ratio: 4.363179e-03	ci left: 7.618493e-01	ci right 7.651846e-01	k: 190880	n:250000
KS ci ratio: 1.404102e-01	ci left: 2.889724e-03	ci right 3.329920e-03	k: 776	n:250000
UBR3   250000 perm   106 sec   (2349 perm/sec)   p_kst 3.104000e-03   p_cons 7.635200e-01   p_joint 7.316000e-03

Joint ci ratio: 9.118622e-02	ci left: 6.735738e-03	ci right 7.383016e-03	k: 1834	n:260000
Cons ci ratio: 4.276453e-03	ci left: 7.620507e-01	ci right 7.653203e-01	k: 198559	n:260000
KS ci ratio: 1.370117e-01	ci left: 2.923379e-03	ci right 3.357044e-03	k: 815	n:260000
UBR3   260000 perm   112 sec   (2323 perm/sec)   p_kst 3.134615e-03   p_cons 7.636885e-01   p_joint 7.053846e-03

Joint ci ratio: 9.045670e-02	ci left: 6.594832e-03	ci right 7.223230e-03	k: 1864	n:270000
Cons ci ratio: 4.196464e-03	ci left: 7.620855e-01	ci right 7.652940e-01	k: 206197	n:270000
KS ci ratio: 1.354470e-01	ci left: 2.883074e-03	ci right 3.305482e-03	k: 834	n:270000
UBR3   270000 perm   117 sec   (2300 perm/sec)   p_kst 3.088889e-03   p_cons 7.636926e-01   p_joint 6.903704e-03

Joint ci ratio: 8.957771e-02	ci left: 6.488454e-03	ci right 7.100393e-03	k: 1901	n:280000
Cons ci ratio: 4.120761e-03	ci left: 7.621220e-01	ci right 7.652725e-01	k: 213836	n:280000
KS ci ratio: 1.328468e-01	ci left: 2.894010e-03	ci right 3.309238e-03	k: 867	n:280000
UBR3   280000 perm   123 sec   (2279 perm/sec)   p_kst 3.096429e-03   p_cons 7.637000e-01   p_joint 6.789286e-03

Joint ci ratio: 8.838020e-02	ci left: 6.440027e-03	ci right 7.038860e-03	k: 1953	n:290000
Cons ci ratio: 4.049593e-03	ci left: 7.621046e-01	ci right 7.652005e-01	k: 221460	n:290000
KS ci ratio: 1.307553e-01	ci left: 2.887584e-03	ci right 3.294860e-03	k: 895	n:290000
UBR3   290000 perm   128 sec   (2259 perm/sec)   p_kst 3.086207e-03   p_cons 7.636552e-01   p_joint 6.734483e-03

Joint ci ratio: 8.887216e-02	ci left: 6.156871e-03	ci right 6.732726e-03	k: 1932	n:300000
Cons ci ratio: 3.982578e-03	ci left: 7.620354e-01	ci right 7.650796e-01	k: 229068	n:300000
KS ci ratio: 1.287596e-01	ci left: 2.881634e-03	ci right 3.281394e-03	k: 923	n:300000
UBR3   300000 perm   134 sec   (2239 perm/sec)   p_kst 3.076667e-03   p_cons 7.635600e-01   p_joint 6.440000e-03

Joint ci ratio: 8.885834e-02	ci left: 5.961390e-03	ci right 6.518869e-03	k: 1933	n:310000
Cons ci ratio: 3.916367e-03	ci left: 7.621940e-01	ci right 7.651881e-01	k: 236745	n:310000
KS ci ratio: 1.270535e-01	ci left: 2.866742e-03	ci right 3.258768e-03	k: 948	n:310000
UBR3   310000 perm   140 sec   (2219 perm/sec)   p_kst 3.058065e-03   p_cons 7.636935e-01   p_joint 6.235484e-03

Joint ci ratio: 8.755577e-02	ci left: 5.952347e-03	ci right 6.500403e-03	k: 1991	n:320000
Cons ci ratio: 3.854753e-03	ci left: 7.622117e-01	ci right 7.651586e-01	k: 244380	n:320000
KS ci ratio: 1.248999e-01	ci left: 2.877032e-03	ci right 3.263304e-03	k: 981	n:320000
UBR3   320000 perm   146 sec   (2199 perm/sec)   p_kst 3.065625e-03   p_cons 7.636875e-01   p_joint 6.221875e-03

Joint ci ratio: 8.466219e-02	ci left: 6.181181e-03	ci right 6.730570e-03	k: 2129	n:330000
Cons ci ratio: 3.795193e-03	ci left: 7.623014e-01	ci right 7.652030e-01	k: 252039	n:330000
KS ci ratio: 1.227311e-01	ci left: 2.892626e-03	ci right 3.273758e-03	k: 1016	n:330000
UBR3   330000 perm   151 sec   (2180 perm/sec)   p_kst 3.078788e-03   p_cons 7.637545e-01   p_joint 6.451515e-03

Joint ci ratio: 8.311382e-02	ci left: 6.229746e-03	ci right 6.772834e-03	k: 2209	n:340000
Cons ci ratio: 3.740597e-03	ci left: 7.621652e-01	ci right 7.650244e-01	k: 259623	n:340000
KS ci ratio: 1.206715e-01	ci left: 2.907358e-03	ci right 3.283543e-03	k: 1051	n:340000
UBR3   340000 perm   157 sec   (2160 perm/sec)   p_kst 3.091176e-03   p_cons 7.635971e-01   p_joint 6.497059e-03

Joint ci ratio: 8.217276e-02	ci left: 6.194452e-03	ci right 6.728055e-03	k: 2260	n:350000
Cons ci ratio: 3.684496e-03	ci left: 7.624093e-01	ci right 7.652264e-01	k: 267337	n:350000
KS ci ratio: 1.190975e-01	ci left: 2.901891e-03	ci right 3.272126e-03	k: 1079	n:350000
UBR3   350000 perm   163 sec   (2141 perm/sec)   p_kst 3.082857e-03   p_cons 7.638200e-01   p_joint 6.457143e-03

Joint ci ratio: 8.078950e-02	ci left: 6.234641e-03	ci right 6.762239e-03	k: 2338	n:360000
Cons ci ratio: 3.631793e-03	ci left: 7.625454e-01	ci right 7.653226e-01	k: 275017	n:360000
KS ci ratio: 1.173711e-01	ci left: 2.907543e-03	ci right 3.272750e-03	k: 1111	n:360000
UBR3   360000 perm   170 sec   (2123 perm/sec)   p_kst 3.086111e-03   p_cons 7.639361e-01   p_joint 6.494444e-03

Joint ci ratio: 8.046839e-02	ci left: 6.116438e-03	ci right 6.631879e-03	k: 2357	n:370000
Cons ci ratio: 3.582683e-03	ci left: 7.625336e-01	ci right 7.652731e-01	k: 282645	n:370000
KS ci ratio: 1.162284e-01	ci left: 2.886682e-03	ci right 3.245495e-03	k: 1133	n:370000
UBR3   370000 perm   176 sec   (2104 perm/sec)   p_kst 3.062162e-03   p_cons 7.639054e-01   p_joint 6.370270e-03

Joint ci ratio: 7.974676e-02	ci left: 6.066364e-03	ci right 6.572788e-03	k: 2400	n:380000
Cons ci ratio: 3.533888e-03	ci left: 7.626888e-01	ci right 7.653914e-01	k: 290336	n:380000
KS ci ratio: 1.146222e-01	ci left: 2.892496e-03	ci right 3.246728e-03	k: 1165	n:380000
UBR3   380000 perm   182 sec   (2087 perm/sec)   p_kst 3.065789e-03   p_cons 7.640421e-01   p_joint 6.315789e-03

Joint ci ratio: 7.862441e-02	ci left: 6.084238e-03	ci right 6.584678e-03	k: 2469	n:390000
Cons ci ratio: 3.490060e-03	ci left: 7.625228e-01	ci right 7.651912e-01	k: 297905	n:390000
KS ci ratio: 1.127979e-01	ci left: 2.912996e-03	ci right 3.263682e-03	k: 1203	n:390000
UBR3   390000 perm   188 sec   (2070 perm/sec)   p_kst 3.084615e-03   p_cons 7.638590e-01   p_joint 6.330769e-03

Joint ci ratio: 7.656791e-02	ci left: 6.260653e-03	ci right 6.761536e-03	k: 2603	n:400000
Cons ci ratio: 3.447199e-03	ci left: 7.624305e-01	ci right 7.650657e-01	k: 305500	n:400000
KS ci ratio: 1.113280e-01	ci left: 2.917929e-03	ci right 3.264331e-03	k: 1235	n:400000
UBR3   400000 perm   195 sec   (2051 perm/sec)   p_kst 3.087500e-03   p_cons 7.637500e-01   p_joint 6.507500e-03

Joint ci ratio: 7.617758e-02	ci left: 6.172540e-03	ci right 6.663743e-03	k: 2630	n:410000
Cons ci ratio: 3.405924e-03	ci left: 7.623380e-01	ci right 7.649412e-01	k: 313093	n:410000
KS ci ratio: 1.102635e-01	ci left: 2.903673e-03	ci right 3.244873e-03	k: 1259	n:410000
UBR3   410000 perm   202 sec   (2030 perm/sec)   p_kst 3.070732e-03   p_cons 7.636415e-01   p_joint 6.414634e-03

Joint ci ratio: 7.528170e-02	ci left: 6.172734e-03	ci right 6.657923e-03	k: 2693	n:420000
Cons ci ratio: 3.364943e-03	ci left: 7.623741e-01	ci right 7.649461e-01	k: 320738	n:420000
KS ci ratio: 1.091013e-01	ci left: 2.897060e-03	ci right 3.233664e-03	k: 1286	n:420000
UBR3   420000 perm   209 sec   (2005 perm/sec)   p_kst 3.061905e-03   p_cons 7.636619e-01   p_joint 6.411905e-03

Joint ci ratio: 7.569845e-02	ci left: 5.962989e-03	ci right 6.434400e-03	k: 2664	n:430000
Cons ci ratio: 3.324913e-03	ci left: 7.624623e-01	ci right 7.650039e-01	k: 328406	n:430000
KS ci ratio: 1.075652e-01	ci left: 2.913402e-03	ci right 3.246838e-03	k: 1323	n:430000
UBR3   430000 perm   217 sec   (1982 perm/sec)   p_kst 3.076744e-03   p_cons 7.637349e-01   p_joint 6.195349e-03

Joint ci ratio: 7.518052e-02	ci left: 5.909965e-03	ci right 6.373847e-03	k: 2701	n:440000
Cons ci ratio: 3.286506e-03	ci left: 7.625216e-01	ci right 7.650340e-01	k: 336063	n:440000
KS ci ratio: 1.063276e-01	ci left: 2.915759e-03	ci right 3.245384e-03	k: 1354	n:440000
UBR3   440000 perm   224 sec   (1960 perm/sec)   p_kst 3.077273e-03   p_cons 7.637795e-01   p_joint 6.138636e-03

Joint ci ratio: 7.476923e-02	ci left: 5.844042e-03	ci right 6.300131e-03	k: 2731	n:450000
Cons ci ratio: 3.250260e-03	ci left: 7.624827e-01	ci right 7.649672e-01	k: 343677	n:450000
KS ci ratio: 1.052080e-01	ci left: 2.913704e-03	ci right 3.239413e-03	k: 1383	n:450000
UBR3   450000 perm   231 sec   (1944 perm/sec)   p_kst 3.073333e-03   p_cons 7.637267e-01   p_joint 6.068889e-03

Joint ci ratio: 7.401489e-02	ci left: 5.836471e-03	ci right 6.287176e-03	k: 2787	n:460000
Cons ci ratio: 3.214820e-03	ci left: 7.624871e-01	ci right 7.649444e-01	k: 351310	n:460000
KS ci ratio: 1.041230e-01	ci left: 2.911755e-03	ci right 3.233685e-03	k: 1412	n:460000
UBR3   460000 perm   238 sec   (1929 perm/sec)   p_kst 3.069565e-03   p_cons 7.637174e-01   p_joint 6.058696e-03

Joint ci ratio: 7.342593e-02	ci left: 5.806267e-03	ci right 6.250920e-03	k: 2832	n:470000
Cons ci ratio: 3.180814e-03	ci left: 7.624573e-01	ci right 7.648884e-01	k: 358927	n:470000
KS ci ratio: 1.029992e-01	ci left: 2.914052e-03	ci right 3.232548e-03	k: 1443	n:470000
UBR3   470000 perm   246 sec   (1914 perm/sec)   p_kst 3.070213e-03   p_cons 7.636745e-01   p_joint 6.025532e-03

Joint ci ratio: 7.302971e-02	ci left: 5.748697e-03	ci right 6.186465e-03	k: 2863	n:480000
Cons ci ratio: 3.145921e-03	ci left: 7.626521e-01	ci right 7.650572e-01	k: 366651	n:480000
KS ci ratio: 1.019804e-01	ci left: 2.912211e-03	ci right 3.227168e-03	k: 1472	n:480000
UBR3   480000 perm   253 sec   (1897 perm/sec)   p_kst 3.066667e-03   p_cons 7.638563e-01   p_joint 5.964583e-03

Joint ci ratio: 7.374989e-02	ci left: 5.521168e-03	ci right 5.945932e-03	k: 2808	n:490000
Cons ci ratio: 3.114087e-03	ci left: 7.626143e-01	ci right 7.649948e-01	k: 374265	n:490000
KS ci ratio: 1.010251e-01	ci left: 2.908470e-03	ci right 3.219901e-03	k: 1500	n:490000
UBR3   490000 perm   260 sec   (1881 perm/sec)   p_kst 3.061224e-03   p_cons 7.638061e-01   p_joint 5.730612e-03

Joint ci ratio: 7.292333e-02	ci left: 5.536399e-03	ci right 5.957359e-03	k: 2872	n:500000
Cons ci ratio: 3.083080e-03	ci left: 7.625921e-01	ci right 7.649488e-01	k: 381886	n:500000
KS ci ratio: 1.000632e-01	ci left: 2.906842e-03	ci right 3.214961e-03	k: 1529	n:500000
UBR3   500000 perm   268 sec   (1863 perm/sec)   p_kst 3.058000e-03   p_cons 7.637720e-01   p_joint 5.744000e-03

Joint ci ratio: 7.227261e-02	ci left: 5.527951e-03	ci right 5.944361e-03	k: 2924	n:510000
Cons ci ratio: 3.052965e-03	ci left: 7.625729e-01	ci right 7.649065e-01	k: 389508	n:510000
KS ci ratio: 9.916023e-02	ci left: 2.903379e-03	ci right 3.208193e-03	k: 1557	n:510000
UBR3   510000 perm   276 sec   (1846 perm/sec)   p_kst 3.052941e-03   p_cons 7.637412e-01   p_joint 5.733333e-03

Outputting figure to mutsig2_images.part000000000186/UBR3.8_5823_510000_0.0030529_0.76374_0.0057333.png
                gene_name: UBR3
               theta_stop: 0.099 
                    nperm: 510000 
                     p_ks: 0.0031 
        ci_ks_bounds_left: 0.0029 
       ci_ks_bounds_right: 0.0032 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.0057 
     ci_joint_bounds_left: 0.0055 
    ci_joint_bounds_right: 0.0059 

Current progress: 20 percent done.
UGT2A1
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.892670e-02	ci left: 1.289466e-01	ci right 1.424664e-01	k: 1356	n:10000
Cons ci ratio: 1.690887e-01	ci left: 4.667345e-02	ci right 5.539046e-02	k: 509	n:10000
KS ci ratio: 7.642078e-02	ci left: 2.002780e-01	ci right 2.162923e-01	k: 2082	n:10000
UGT2A1   10000 perm   2 sec   (5063 perm/sec)   p_kst 2.082000e-01   p_cons 5.090000e-02   p_joint 1.356000e-01

Joint ci ratio: 8.797668e-02	ci left: 8.631360e-02	ci right 9.430597e-02	k: 1805	n:20000
Cons ci ratio: 1.188925e-01	ci left: 4.847732e-02	ci right 5.465388e-02	k: 1030	n:20000
KS ci ratio: 5.432667e-02	ci left: 2.009079e-01	ci right 2.121775e-01	k: 4130	n:20000
UGT2A1   20000 perm   4 sec   (4591 perm/sec)   p_kst 2.065000e-01   p_cons 5.150000e-02   p_joint 9.025000e-02

Joint ci ratio: 7.180401e-02	ci left: 8.711266e-02	ci right 9.363359e-02	k: 2710	n:30000
Cons ci ratio: 9.752563e-02	ci left: 4.860257e-02	ci right 5.361815e-02	k: 1532	n:30000
KS ci ratio: 4.411334e-02	ci left: 2.037495e-01	ci right 2.129737e-01	k: 6250	n:30000
UGT2A1   30000 perm   7 sec   (4372 perm/sec)   p_kst 2.083333e-01   p_cons 5.106667e-02   p_joint 9.033333e-02

Outputting figure to mutsig2_images.part000000000186/UGT2A1.7_1608_30000_0.20833_0.051067_0.090333.png
                gene_name: UGT2A1
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.094 

Current progress: 22 percent done.
UGT8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.988809e-02	ci left: 7.872564e-01	ci right 8.031712e-01	k: 7953	n:10000
Cons ci ratio: 3.427985e-02	ci left: 5.568193e-01	ci right 5.763419e-01	k: 5666	n:10000
KS ci ratio: 3.965928e-02	ci left: 4.842538e-01	ci right 5.039497e-01	k: 4941	n:10000
UGT8   10000 perm   2 sec   (5231 perm/sec)   p_kst 4.941000e-01   p_cons 5.666000e-01   p_joint 7.953000e-01

Outputting figure to mutsig2_images.part000000000186/UGT8.8_1646_10000_0.4941_0.5666_0.7953.png
                gene_name: UGT8
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.80 

Current progress: 23 percent done.
UHRF1BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.436501e-01	ci left: 6.430174e-02	ci right 7.435091e-02	k: 692	n:10000
Cons ci ratio: 1.518144e-01	ci left: 5.773721e-02	ci right 6.731959e-02	k: 624	n:10000
KS ci ratio: 6.247168e-02	ci left: 2.735913e-01	ci right 2.913356e-01	k: 2824	n:10000
UHRF1BP1   10000 perm   2 sec   (4234 perm/sec)   p_kst 2.824000e-01   p_cons 6.240000e-02   p_joint 6.920000e-02

Joint ci ratio: 8.979208e-02	ci left: 8.308030e-02	ci right 9.094026e-02	k: 1739	n:20000
Cons ci ratio: 1.035173e-01	ci left: 6.342669e-02	ci right 7.039986e-02	k: 1337	n:20000
KS ci ratio: 4.581542e-02	ci left: 2.617714e-01	ci right 2.740961e-01	k: 5358	n:20000
UHRF1BP1   20000 perm   5 sec   (3917 perm/sec)   p_kst 2.679000e-01   p_cons 6.685000e-02   p_joint 8.695000e-02

Joint ci ratio: 7.948032e-02	ci left: 7.201137e-02	ci right 7.800458e-02	k: 2249	n:30000
Cons ci ratio: 8.378625e-02	ci left: 6.514386e-02	ci right 7.087347e-02	k: 2039	n:30000
KS ci ratio: 3.796438e-02	ci left: 2.571964e-01	ci right 2.671831e-01	k: 7865	n:30000
UHRF1BP1   30000 perm   8 sec   (3780 perm/sec)   p_kst 2.621667e-01   p_cons 6.796667e-02   p_joint 7.496667e-02

Outputting figure to mutsig2_images.part000000000186/UHRF1BP1.8_4407_30000_0.26217_0.067967_0.074967.png
                gene_name: UHRF1BP1
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.078 

Current progress: 25 percent done.
UHRF1BP1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.650398e-02	ci left: 5.256658e-01	ci right 5.453136e-01	k: 5355	n:10000
KS ci ratio: 2.293946e-02	ci left: 7.362356e-01	ci right 7.534215e-01	k: 7449	n:10000
UHRF1BP1L   10000 perm   3 sec   (3756 perm/sec)   p_kst 7.449000e-01   p_cons 5.355000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UHRF1BP1L.8_4503_10000_0.7449_0.5355_1.png
                gene_name: UHRF1BP1L
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
UBE4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.676892e-02	ci left: 5.220620e-01	ci right 5.417194e-01	k: 5319	n:10000
KS ci ratio: 1.432748e-02	ci left: 8.757201e-01	ci right 8.884564e-01	k: 8822	n:10000
UBE4A   10000 perm   2 sec   (4336 perm/sec)   p_kst 8.822000e-01   p_cons 5.319000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UBE4A.7_3298_10000_0.8822_0.5319_1.png
                gene_name: UBE4A
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
UGP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.950796e-02	ci left: 2.328414e-01	ci right 2.497096e-01	k: 2412	n:10000
Cons ci ratio: 3.878641e-03	ci left: 9.882892e-01	ci right 9.922172e-01	k: 9904	n:10000
KS ci ratio: 1.134190e-01	ci left: 1.006167e-01	ci right 1.128135e-01	k: 1066	n:10000
UGP2   10000 perm   2 sec   (5121 perm/sec)   p_kst 1.066000e-01   p_cons 9.904000e-01   p_joint 2.412000e-01

Joint ci ratio: 5.770953e-02	ci left: 1.820125e-01	ci right 1.928785e-01	k: 3748	n:20000
Cons ci ratio: 2.922905e-03	ci left: 9.875094e-01	ci right 9.904458e-01	k: 19781	n:20000
KS ci ratio: 7.953495e-02	ci left: 1.039762e-01	ci right 1.126380e-01	k: 2165	n:20000
UGP2   20000 perm   4 sec   (4486 perm/sec)   p_kst 1.082500e-01   p_cons 9.890500e-01   p_joint 1.874000e-01

Outputting figure to mutsig2_images.part000000000186/UGP2.7_1567_20000_0.10825_0.98905_0.1874.png
                gene_name: UGP2
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 30 percent done.
UGT2A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.354428e-02	ci left: 8.871865e-01	ci right 8.993833e-01	k: 8934	n:10000
Cons ci ratio: 5.078065e-02	ci left: 3.638081e-01	ci right 3.828658e-01	k: 3733	n:10000
KS ci ratio: 2.714277e-02	ci left: 6.666264e-01	ci right 6.850711e-01	k: 6759	n:10000
UGT2A3   10000 perm   2 sec   (5593 perm/sec)   p_kst 6.759000e-01   p_cons 3.733000e-01   p_joint 8.934000e-01

Outputting figure to mutsig2_images.part000000000186/UGT2A3.7_1608_10000_0.6759_0.3733_0.8934.png
                gene_name: UGT2A3
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 32 percent done.
UGT2B17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.780142e-02	ci left: 3.923700e-01	ci right 4.116871e-01	k: 4020	n:10000
Cons ci ratio: 8.692213e-02	ci left: 1.616039e-01	ci right 1.763894e-01	k: 1689	n:10000
KS ci ratio: 1.564741e-02	ci left: 8.556968e-01	ci right 8.692912e-01	k: 8626	n:10000
UGT2B17   10000 perm   2 sec   (5093 perm/sec)   p_kst 8.626000e-01   p_cons 1.689000e-01   p_joint 4.020000e-01

Outputting figure to mutsig2_images.part000000000186/UGT2B17.7_1617_10000_0.8626_0.1689_0.402.png
                gene_name: UGT2B17
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 33 percent done.
UGT3A1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.674720e-02	ci left: 6.730726e-01	ci right 6.914211e-01	k: 6823	n:10000
Cons ci ratio: 3.360087e-02	ci left: 5.666442e-01	ci right 5.861113e-01	k: 5764	n:10000
KS ci ratio: 3.547462e-02	ci left: 5.398854e-01	ci right 5.594856e-01	k: 5497	n:10000
UGT3A1   10000 perm   2 sec   (5130 perm/sec)   p_kst 5.497000e-01   p_cons 5.764000e-01   p_joint 6.823000e-01

Outputting figure to mutsig2_images.part000000000186/UGT3A1.7_1682_10000_0.5497_0.5764_0.6823.png
                gene_name: UGT3A1
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 35 percent done.
UGT3A2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.969783e-02	ci left: 6.257775e-01	ci right 6.447437e-01	k: 6353	n:10000
Cons ci ratio: 3.349779e-02	ci left: 5.681483e-01	ci right 5.876063e-01	k: 5779	n:10000
KS ci ratio: 5.757927e-02	ci left: 3.074877e-01	ci right 3.258192e-01	k: 3166	n:10000
UGT3A2   10000 perm   2 sec   (6008 perm/sec)   p_kst 3.166000e-01   p_cons 5.779000e-01   p_joint 6.353000e-01

Outputting figure to mutsig2_images.part000000000186/UGT3A2.7_1600_10000_0.3166_0.5779_0.6353.png
                gene_name: UGT3A2
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 37 percent done.
UBE3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.709020e-02	ci left: 2.458864e-01	ci right 2.630569e-01	k: 2544	n:10000
Cons ci ratio: 2.624881e-02	ci left: 6.812340e-01	ci right 6.994550e-01	k: 6904	n:10000
KS ci ratio: 8.751475e-02	ci left: 1.597376e-01	ci right 1.744569e-01	k: 1670	n:10000
UBE3B   10000 perm   2 sec   (4697 perm/sec)   p_kst 1.670000e-01   p_cons 6.904000e-01   p_joint 2.544000e-01

Outputting figure to mutsig2_images.part000000000186/UBE3B.6_3311_10000_0.167_0.6904_0.2544.png
                gene_name: UBE3B
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 38 percent done.
UBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.309380e-02	ci left: 2.696308e-01	ci right 2.872985e-01	k: 2784	n:10000
Cons ci ratio: 3.386300e-02	ci left: 5.628341e-01	ci right 5.823236e-01	k: 5726	n:10000
KS ci ratio: 7.443885e-02	ci left: 2.089543e-01	ci right 2.252108e-01	k: 2170	n:10000
UBP1   10000 perm   2 sec   (5150 perm/sec)   p_kst 2.170000e-01   p_cons 5.726000e-01   p_joint 2.784000e-01

Outputting figure to mutsig2_images.part000000000186/UBP1.6_1687_10000_0.217_0.5726_0.2784.png
                gene_name: UBP1
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 40 percent done.
UBTF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.990893e-02	ci left: 2.307670e-01	ci right 2.475852e-01	k: 2391	n:10000
Cons ci ratio: 3.705039e-02	ci left: 5.182587e-01	ci right 5.379249e-01	k: 5281	n:10000
KS ci ratio: 8.908765e-02	ci left: 1.549259e-01	ci right 1.694715e-01	k: 1621	n:10000
UBTF   10000 perm   2 sec   (4977 perm/sec)   p_kst 1.621000e-01   p_cons 5.281000e-01   p_joint 2.391000e-01

Outputting figure to mutsig2_images.part000000000186/UBTF.6_2375_10000_0.1621_0.5281_0.2391.png
                gene_name: UBTF
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 42 percent done.
UGT1A9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.537790e-02	ci left: 1.375651e-01	ci right 1.514427e-01	k: 1444	n:10000
Cons ci ratio: 1.767934e-02	ci left: 8.235089e-01	ci right 8.382978e-01	k: 8310	n:10000
KS ci ratio: 1.781042e-01	ci left: 4.207265e-02	ci right 5.039427e-02	k: 461	n:10000
UGT1A9   10000 perm   2 sec   (6088 perm/sec)   p_kst 4.610000e-02   p_cons 8.310000e-01   p_joint 1.444000e-01

Joint ci ratio: 6.678307e-02	ci left: 1.420204e-01	ci right 1.518825e-01	k: 2938	n:20000
Cons ci ratio: 1.226632e-02	ci left: 8.310477e-01	ci right 8.413544e-01	k: 16725	n:20000
KS ci ratio: 1.230376e-01	ci left: 4.532094e-02	ci right 5.131125e-02	k: 965	n:20000
UGT1A9   20000 perm   4 sec   (5261 perm/sec)   p_kst 4.825000e-02   p_cons 8.362500e-01   p_joint 1.469000e-01

Joint ci ratio: 5.620159e-02	ci left: 1.355978e-01	ci right 1.434721e-01	k: 4185	n:30000
Cons ci ratio: 9.716893e-03	ci left: 8.402146e-01	ci right 8.484519e-01	k: 25331	n:30000
KS ci ratio: 9.903252e-02	ci left: 4.717018e-02	ci right 5.211750e-02	k: 1488	n:30000
UGT1A9   30000 perm   6 sec   (4961 perm/sec)   p_kst 4.960000e-02   p_cons 8.443667e-01   p_joint 1.395000e-01

Outputting figure to mutsig2_images.part000000000186/UGT1A9.6_1613_30000_0.0496_0.84437_0.1395.png
                gene_name: UGT1A9
               theta_stop: 0.099 
                    nperm: 30000 
                     p_ks: 0.050 
        ci_ks_bounds_left: 0.047 
       ci_ks_bounds_right: 0.052 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 43 percent done.
UGT2B11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.602146e-02	ci left: 8.498828e-01	ci right 8.637086e-01	k: 8569	n:10000
Cons ci ratio: 3.685760e-02	ci left: 5.208609e-01	ci right 5.405212e-01	k: 5307	n:10000
KS ci ratio: 1.708459e-02	ci left: 8.330730e-01	ci right 8.475282e-01	k: 8404	n:10000
UGT2B11   10000 perm   2 sec   (5415 perm/sec)   p_kst 8.404000e-01   p_cons 5.307000e-01   p_joint 8.569000e-01

Outputting figure to mutsig2_images.part000000000186/UGT2B11.6_1614_10000_0.8404_0.5307_0.8569.png
                gene_name: UGT2B11
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 45 percent done.
UGT2B7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.895191e-02	ci left: 4.932507e-01	ci right 5.129475e-01	k: 5031	n:10000
Cons ci ratio: 8.301904e-02	ci left: 1.746777e-01	ci right 1.899078e-01	k: 1822	n:10000
KS ci ratio: 2.284292e-02	ci left: 7.378529e-01	ci right 7.550034e-01	k: 7465	n:10000
UGT2B7   10000 perm   2 sec   (5666 perm/sec)   p_kst 7.465000e-01   p_cons 1.822000e-01   p_joint 5.031000e-01

Outputting figure to mutsig2_images.part000000000186/UGT2B7.6_1614_10000_0.7465_0.1822_0.5031.png
                gene_name: UGT2B7
               theta_stop: 0.083 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 47 percent done.
UBOX5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.164444e-02	ci left: 5.957408e-01	ci right 6.149978e-01	k: 6054	n:10000
Cons ci ratio: 2.935274e-02	ci left: 6.312063e-01	ci right 6.501117e-01	k: 6407	n:10000
KS ci ratio: 5.152669e-02	ci left: 3.570460e-01	ci right 3.760318e-01	k: 3665	n:10000
UBOX5   10000 perm   2 sec   (6146 perm/sec)   p_kst 3.665000e-01   p_cons 6.407000e-01   p_joint 6.054000e-01

Outputting figure to mutsig2_images.part000000000186/UBOX5.5_1642_10000_0.3665_0.6407_0.6054.png
                gene_name: UBOX5
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.61 

Current progress: 48 percent done.
UBQLNL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.960612e-01	ci left: 7.782754e-03	ci right 1.171078e-02	k: 96	n:10000
Cons ci ratio: 1.131226e-01	ci left: 1.011041e-01	ci right 1.133258e-01	k: 1071	n:10000
KS ci ratio: 7.268333e-01	ci left: 1.861361e-03	ci right 4.044256e-03	k: 28	n:10000
UBQLNL   10000 perm   2 sec   (5287 perm/sec)   p_kst 2.800000e-03   p_cons 1.071000e-01   p_joint 9.600000e-03

Joint ci ratio: 2.401172e-01	ci left: 1.157027e-02	ci right 1.477358e-02	k: 262	n:20000
Cons ci ratio: 7.814601e-02	ci left: 1.073661e-01	ci right 1.161471e-01	k: 2234	n:20000
KS ci ratio: 5.278323e-01	ci left: 2.028954e-03	ci right 3.521464e-03	k: 54	n:20000
UBQLNL   20000 perm   4 sec   (4757 perm/sec)   p_kst 2.700000e-03   p_cons 1.117000e-01   p_joint 1.310000e-02

Joint ci ratio: 1.982318e-01	ci left: 1.159035e-02	ci right 1.417193e-02	k: 385	n:30000
Cons ci ratio: 6.376888e-02	ci left: 1.082881e-01	ci right 1.154540e-01	k: 3355	n:30000
KS ci ratio: 4.080544e-01	ci left: 2.442933e-03	ci right 3.722974e-03	k: 91	n:30000
UBQLNL   30000 perm   7 sec   (4521 perm/sec)   p_kst 3.033333e-03   p_cons 1.118333e-01   p_joint 1.283333e-02

Joint ci ratio: 1.923610e-01	ci left: 9.286121e-03	ci right 1.128593e-02	k: 410	n:40000
Cons ci ratio: 5.541172e-02	ci left: 1.081102e-01	ci right 1.142963e-01	k: 4447	n:40000
KS ci ratio: 3.514760e-01	ci left: 2.556258e-03	ci right 3.667820e-03	k: 123	n:40000
UBQLNL   40000 perm   9 sec   (4254 perm/sec)   p_kst 3.075000e-03   p_cons 1.111750e-01   p_joint 1.025000e-02

Joint ci ratio: 1.952125e-01	ci left: 7.218797e-03	ci right 8.799126e-03	k: 399	n:50000
Cons ci ratio: 4.997233e-02	ci left: 1.068350e-01	ci right 1.123304e-01	k: 5478	n:50000
KS ci ratio: 3.103785e-01	ci left: 2.687090e-03	ci right 3.691962e-03	k: 158	n:50000
UBQLNL   50000 perm   12 sec   (4191 perm/sec)   p_kst 3.160000e-03   p_cons 1.095600e-01   p_joint 7.980000e-03

Joint ci ratio: 1.660757e-01	ci left: 8.435560e-03	ci right 9.979140e-03	k: 551	n:60000
Cons ci ratio: 4.553594e-02	ci left: 1.074245e-01	ci right 1.124467e-01	k: 6595	n:60000
KS ci ratio: 2.893301e-01	ci left: 2.609169e-03	ci right 3.506634e-03	k: 182	n:60000
UBQLNL   60000 perm   15 sec   (4077 perm/sec)   p_kst 3.033333e-03   p_cons 1.099167e-01   p_joint 9.183333e-03

Joint ci ratio: 1.683513e-01	ci left: 7.038413e-03	ci right 8.345749e-03	k: 537	n:70000
Cons ci ratio: 4.210078e-02	ci left: 1.078752e-01	ci right 1.125286e-01	k: 7713	n:70000
KS ci ratio: 2.700977e-01	ci left: 2.595116e-03	ci right 3.418367e-03	k: 209	n:70000
UBQLNL   70000 perm   18 sec   (3934 perm/sec)   p_kst 2.985714e-03   p_cons 1.101857e-01   p_joint 7.671429e-03

Joint ci ratio: 1.162037e-01	ci left: 1.320940e-02	ci right 1.485112e-02	k: 1121	n:80000
Cons ci ratio: 3.934159e-02	ci left: 1.082239e-01	ci right 1.125794e-01	k: 8831	n:80000
KS ci ratio: 2.510843e-01	ci left: 2.656324e-03	ci right 3.430411e-03	k: 242	n:80000
UBQLNL   80000 perm   21 sec   (3859 perm/sec)   p_kst 3.025000e-03   p_cons 1.103875e-01   p_joint 1.401250e-02

Joint ci ratio: 1.188421e-01	ci left: 1.123413e-02	ci right 1.266426e-02	k: 1074	n:90000
Cons ci ratio: 3.697876e-02	ci left: 1.089437e-01	ci right 1.130592e-01	k: 9989	n:90000
KS ci ratio: 2.436971e-01	ci left: 2.517490e-03	ci right 3.226266e-03	k: 257	n:90000
UBQLNL   90000 perm   24 sec   (3807 perm/sec)   p_kst 2.855556e-03   p_cons 1.109889e-01   p_joint 1.193333e-02

Joint ci ratio: 1.227210e-01	ci left: 9.479813e-03	ci right 1.072885e-02	k: 1009	n:100000
Cons ci ratio: 3.505451e-02	ci left: 1.091982e-01	ci right 1.131043e-01	k: 11114	n:100000
KS ci ratio: 2.339354e-01	ci left: 2.472574e-03	ci right 3.136786e-03	k: 279	n:100000
UBQLNL   100000 perm   27 sec   (3753 perm/sec)   p_kst 2.790000e-03   p_cons 1.111400e-01   p_joint 1.009000e-02

Joint ci ratio: 1.249177e-01	ci left: 8.318179e-03	ci right 9.435219e-03	k: 975	n:110000
Cons ci ratio: 3.355998e-02	ci left: 1.084906e-01	ci right 1.122027e-01	k: 12137	n:110000
KS ci ratio: 2.245155e-01	ci left: 2.453449e-03	ci right 3.082314e-03	k: 303	n:110000
UBQLNL   110000 perm   30 sec   (3703 perm/sec)   p_kst 2.754545e-03   p_cons 1.103364e-01   p_joint 8.863636e-03

Joint ci ratio: 1.264755e-01	ci left: 7.439142e-03	ci right 8.451521e-03	k: 952	n:120000
Cons ci ratio: 3.210462e-02	ci left: 1.087314e-01	ci right 1.122874e-01	k: 13260	n:120000
KS ci ratio: 2.148392e-01	ci left: 2.469497e-03	ci right 3.071599e-03	k: 331	n:120000
UBQLNL   120000 perm   33 sec   (3652 perm/sec)   p_kst 2.758333e-03   p_cons 1.105000e-01   p_joint 7.933333e-03

Joint ci ratio: 1.244270e-01	ci left: 7.105252e-03	ci right 8.055373e-03	k: 984	n:130000
Cons ci ratio: 3.086818e-02	ci left: 1.086555e-01	ci right 1.120696e-01	k: 14346	n:130000
KS ci ratio: 2.054584e-01	ci left: 2.505457e-03	ci right 3.086305e-03	k: 362	n:130000
UBQLNL   130000 perm   36 sec   (3601 perm/sec)   p_kst 2.784615e-03   p_cons 1.103538e-01   p_joint 7.569231e-03

Joint ci ratio: 1.244610e-01	ci left: 6.597626e-03	ci right 7.480120e-03	k: 984	n:140000
Cons ci ratio: 2.867520e-02	ci left: 1.160731e-01	ci right 1.194570e-01	k: 16486	n:140000
KS ci ratio: 1.974594e-01	ci left: 2.529979e-03	ci right 3.090929e-03	k: 392	n:140000
UBQLNL   140000 perm   39 sec   (3547 perm/sec)   p_kst 2.800000e-03   p_cons 1.177571e-01   p_joint 7.028571e-03

Joint ci ratio: 1.181371e-01	ci left: 6.856001e-03	ci right 7.723208e-03	k: 1092	n:150000
Cons ci ratio: 2.775245e-02	ci left: 1.157618e-01	ci right 1.190263e-01	k: 17608	n:150000
KS ci ratio: 1.866038e-01	ci left: 2.659610e-03	ci right 3.213214e-03	k: 439	n:150000
UBQLNL   150000 perm   43 sec   (3483 perm/sec)   p_kst 2.926667e-03   p_cons 1.173867e-01   p_joint 7.280000e-03

Joint ci ratio: 1.151780e-01	ci left: 6.773339e-03	ci right 7.607168e-03	k: 1149	n:160000
Cons ci ratio: 2.683635e-02	ci left: 1.160813e-01	ci right 1.192451e-01	k: 18825	n:160000
KS ci ratio: 1.825075e-01	ci left: 2.612603e-03	ci right 3.143165e-03	k: 459	n:160000
UBQLNL   160000 perm   47 sec   (3438 perm/sec)   p_kst 2.868750e-03   p_cons 1.176563e-01   p_joint 7.181250e-03

Joint ci ratio: 1.171146e-01	ci left: 6.163469e-03	ci right 6.935857e-03	k: 1112	n:170000
Cons ci ratio: 2.600314e-02	ci left: 1.163823e-01	ci right 1.194543e-01	k: 20045	n:170000
KS ci ratio: 1.777434e-01	ci left: 2.599348e-03	ci right 3.111957e-03	k: 484	n:170000
UBQLNL   170000 perm   50 sec   (3394 perm/sec)   p_kst 2.847059e-03   p_cons 1.179118e-01   p_joint 6.541176e-03

Joint ci ratio: 1.146240e-01	ci left: 6.085372e-03	ci right 6.830657e-03	k: 1161	n:180000
Cons ci ratio: 2.526321e-02	ci left: 1.164854e-01	ci right 1.194713e-01	k: 21235	n:180000
KS ci ratio: 1.728249e-01	ci left: 2.603672e-03	ci right 3.101443e-03	k: 512	n:180000
UBQLNL   180000 perm   54 sec   (3349 perm/sec)   p_kst 2.844444e-03   p_cons 1.179722e-01   p_joint 6.450000e-03

Joint ci ratio: 9.948495e-02	ci left: 7.701848e-03	ci right 8.513268e-03	k: 1539	n:190000
Cons ci ratio: 2.456753e-02	ci left: 1.167097e-01	ci right 1.196178e-01	k: 22450	n:190000
KS ci ratio: 1.682934e-01	ci left: 2.607715e-03	ci right 3.091862e-03	k: 540	n:190000
UBQLNL   190000 perm   58 sec   (3289 perm/sec)   p_kst 2.842105e-03   p_cons 1.181579e-01   p_joint 8.100000e-03

Joint ci ratio: 9.993122e-02	ci left: 7.253292e-03	ci right 8.021082e-03	k: 1526	n:200000
Cons ci ratio: 2.398037e-02	ci left: 1.164449e-01	ci right 1.192762e-01	k: 23571	n:200000
KS ci ratio: 1.643906e-01	ci left: 2.601917e-03	ci right 3.072676e-03	k: 566	n:200000
UBQLNL   200000 perm   62 sec   (3215 perm/sec)   p_kst 2.830000e-03   p_cons 1.178550e-01   p_joint 7.630000e-03

Joint ci ratio: 1.290959e-01	ci left: 4.089136e-03	ci right 4.658011e-03	k: 917	n:210000
Cons ci ratio: 2.425342e-02	ci left: 1.092900e-01	ci right 1.119779e-01	k: 23232	n:210000
KS ci ratio: 1.607473e-01	ci left: 2.596788e-03	ci right 3.055201e-03	k: 592	n:210000
UBQLNL   210000 perm   66 sec   (3175 perm/sec)   p_kst 2.819048e-03   p_cons 1.106286e-01   p_joint 4.366667e-03

Joint ci ratio: 1.263731e-01	ci left: 4.079273e-03	ci right 4.633910e-03	k: 957	n:220000
Cons ci ratio: 2.368340e-02	ci left: 1.094234e-01	ci right 1.120505e-01	k: 24361	n:220000
KS ci ratio: 1.569550e-01	ci left: 2.605332e-03	ci right 3.053381e-03	k: 621	n:220000
UBQLNL   220000 perm   70 sec   (3137 perm/sec)   p_kst 2.822727e-03   p_cons 1.107318e-01   p_joint 4.350000e-03

Joint ci ratio: 1.236292e-01	ci left: 4.083025e-03	ci right 4.625235e-03	k: 1000	n:230000
Cons ci ratio: 2.318247e-02	ci left: 1.092864e-01	ci right 1.118539e-01	k: 25430	n:230000
KS ci ratio: 1.529485e-01	ci left: 2.629975e-03	ci right 3.069659e-03	k: 654	n:230000
UBQLNL   230000 perm   74 sec   (3099 perm/sec)   p_kst 2.843478e-03   p_cons 1.105652e-01   p_joint 4.347826e-03

Joint ci ratio: 1.207664e-01	ci left: 4.106788e-03	ci right 4.638624e-03	k: 1048	n:240000
Cons ci ratio: 2.269133e-02	ci left: 1.093395e-01	ci right 1.118532e-01	k: 26542	n:240000
KS ci ratio: 1.493428e-01	ci left: 2.648685e-03	ci right 3.080126e-03	k: 686	n:240000
UBQLNL   240000 perm   78 sec   (3062 perm/sec)   p_kst 2.858333e-03   p_cons 1.105917e-01   p_joint 4.366667e-03

Joint ci ratio: 1.204317e-01	ci left: 3.965775e-03	ci right 4.477824e-03	k: 1054	n:250000
Cons ci ratio: 2.223286e-02	ci left: 1.093651e-01	ci right 1.118279e-01	k: 27648	n:250000
KS ci ratio: 1.455751e-01	ci left: 2.681429e-03	ci right 3.106226e-03	k: 722	n:250000
UBQLNL   250000 perm   83 sec   (3025 perm/sec)   p_kst 2.888000e-03   p_cons 1.105920e-01   p_joint 4.216000e-03

Joint ci ratio: 1.180498e-01	ci left: 3.973698e-03	ci right 4.475914e-03	k: 1097	n:260000
Cons ci ratio: 2.180408e-02	ci left: 1.093624e-01	ci right 1.117770e-01	k: 28747	n:260000
KS ci ratio: 1.427405e-01	ci left: 2.685813e-03	ci right 3.102314e-03	k: 751	n:260000
UBQLNL   260000 perm   87 sec   (2990 perm/sec)   p_kst 2.888462e-03   p_cons 1.105654e-01   p_joint 4.219231e-03

Joint ci ratio: 1.171519e-01	ci left: 3.887625e-03	ci right 4.374966e-03	k: 1114	n:270000
Cons ci ratio: 2.141169e-02	ci left: 1.092461e-01	ci right 1.116142e-01	k: 29815	n:270000
KS ci ratio: 1.395289e-01	ci left: 2.711393e-03	ci right 3.121614e-03	k: 786	n:270000
UBQLNL   270000 perm   91 sec   (2954 perm/sec)   p_kst 2.911111e-03   p_cons 1.104259e-01   p_joint 4.125926e-03

Joint ci ratio: 1.153567e-01	ci left: 3.870144e-03	ci right 4.347353e-03	k: 1149	n:280000
Cons ci ratio: 2.102636e-02	ci left: 1.092628e-01	ci right 1.115881e-01	k: 30918	n:280000
KS ci ratio: 1.376204e-01	ci left: 2.690403e-03	ci right 3.091425e-03	k: 808	n:280000
UBQLNL   280000 perm   96 sec   (2917 perm/sec)   p_kst 2.885714e-03   p_cons 1.104214e-01   p_joint 4.103571e-03

Joint ci ratio: 1.139315e-01	ci left: 3.833819e-03	ci right 4.300315e-03	k: 1178	n:290000
Cons ci ratio: 2.064481e-02	ci left: 1.094332e-01	ci right 1.117194e-01	k: 32066	n:290000
KS ci ratio: 1.349760e-01	ci left: 2.704214e-03	ci right 3.098927e-03	k: 840	n:290000
UBQLNL   290000 perm   101 sec   (2882 perm/sec)   p_kst 2.896552e-03   p_cons 1.105724e-01   p_joint 4.062069e-03

Joint ci ratio: 9.749342e-02	ci left: 5.098590e-03	ci right 5.624368e-03	k: 1607	n:300000
Cons ci ratio: 2.028295e-02	ci left: 1.095959e-01	ci right 1.118449e-01	k: 33215	n:300000
KS ci ratio: 1.329374e-01	ci left: 2.697835e-03	ci right 3.085200e-03	k: 866	n:300000
UBQLNL   300000 perm   105 sec   (2849 perm/sec)   p_kst 2.886667e-03   p_cons 1.107167e-01   p_joint 5.356667e-03

Joint ci ratio: 9.774661e-02	ci left: 4.908920e-03	ci right 5.416527e-03	k: 1599	n:310000
Cons ci ratio: 1.995384e-02	ci left: 1.096072e-01	ci right 1.118195e-01	k: 34320	n:310000
KS ci ratio: 1.304766e-01	ci left: 2.713754e-03	ci right 3.095633e-03	k: 899	n:310000
UBQLNL   310000 perm   110 sec   (2818 perm/sec)   p_kst 2.900000e-03   p_cons 1.107097e-01   p_joint 5.158065e-03

Joint ci ratio: 9.732751e-02	ci left: 4.798186e-03	ci right 5.292093e-03	k: 1613	n:320000
Cons ci ratio: 1.963714e-02	ci left: 1.096491e-01	ci right 1.118267e-01	k: 35435	n:320000
KS ci ratio: 1.273966e-01	ci left: 2.762019e-03	ci right 3.140821e-03	k: 943	n:320000
UBQLNL   320000 perm   115 sec   (2787 perm/sec)   p_kst 2.946875e-03   p_cons 1.107344e-01   p_joint 5.040625e-03

Joint ci ratio: 1.069486e-01	ci left: 3.837635e-03	ci right 4.274175e-03	k: 1337	n:330000
Cons ci ratio: 1.933059e-02	ci left: 1.097340e-01	ci right 1.118789e-01	k: 36565	n:330000
KS ci ratio: 1.257433e-01	ci left: 2.751679e-03	ci right 3.123801e-03	k: 968	n:330000
UBQLNL   330000 perm   120 sec   (2757 perm/sec)   p_kst 2.933333e-03   p_cons 1.108030e-01   p_joint 4.051515e-03

Joint ci ratio: 1.055004e-01	ci left: 3.830695e-03	ci right 4.260179e-03	k: 1374	n:340000
Cons ci ratio: 1.905787e-02	ci left: 1.096091e-01	ci right 1.117210e-01	k: 37625	n:340000
KS ci ratio: 1.239653e-01	ci left: 2.750528e-03	ci right 3.116849e-03	k: 996	n:340000
UBQLNL   340000 perm   125 sec   (2728 perm/sec)   p_kst 2.929412e-03   p_cons 1.106618e-01   p_joint 4.041176e-03

Joint ci ratio: 8.694504e-02	ci left: 5.523142e-03	ci right 6.027951e-03	k: 2020	n:350000
Cons ci ratio: 1.878382e-02	ci left: 1.096225e-01	ci right 1.117040e-01	k: 38731	n:350000
KS ci ratio: 1.220221e-01	ci left: 2.760558e-03	ci right 3.122035e-03	k: 1028	n:350000
UBQLNL   350000 perm   130 sec   (2698 perm/sec)   p_kst 2.937143e-03   p_cons 1.106600e-01   p_joint 5.771429e-03

Joint ci ratio: 8.179877e-02	ci left: 6.079506e-03	ci right 6.600710e-03	k: 2281	n:360000
Cons ci ratio: 1.852492e-02	ci left: 1.095966e-01	ci right 1.116486e-01	k: 39823	n:360000
KS ci ratio: 1.206244e-01	ci left: 2.748518e-03	ci right 3.104002e-03	k: 1052	n:360000
UBQLNL   360000 perm   135 sec   (2669 perm/sec)   p_kst 2.922222e-03   p_cons 1.106194e-01   p_joint 6.336111e-03

Joint ci ratio: 7.206959e-02	ci left: 7.646447e-03	ci right 8.220759e-03	k: 2934	n:370000
Cons ci ratio: 1.761818e-02	ci left: 1.169675e-01	ci right 1.190493e-01	k: 43662	n:370000
KS ci ratio: 1.192737e-01	ci left: 2.737152e-03	ci right 3.086922e-03	k: 1076	n:370000
UBQLNL   370000 perm   140 sec   (2641 perm/sec)   p_kst 2.908108e-03   p_cons 1.180054e-01   p_joint 7.929730e-03

Joint ci ratio: 7.220124e-02	ci left: 7.419352e-03	ci right 7.977668e-03	k: 2924	n:380000
Cons ci ratio: 1.738902e-02	ci left: 1.169313e-01	ci right 1.189851e-01	k: 44823	n:380000
KS ci ratio: 1.179136e-01	ci left: 2.728958e-03	ci right 3.073428e-03	k: 1101	n:380000
UBQLNL   380000 perm   145 sec   (2614 perm/sec)   p_kst 2.897368e-03   p_cons 1.179553e-01   p_joint 7.694737e-03

Joint ci ratio: 6.594301e-02	ci left: 8.683273e-03	ci right 9.277903e-03	k: 3501	n:390000
Cons ci ratio: 1.778627e-02	ci left: 1.097680e-01	ci right 1.117404e-01	k: 43193	n:390000
KS ci ratio: 1.163921e-01	ci left: 2.731165e-03	ci right 3.071159e-03	k: 1130	n:390000
UBQLNL   390000 perm   151 sec   (2586 perm/sec)   p_kst 2.897436e-03   p_cons 1.107513e-01   p_joint 8.976923e-03

Joint ci ratio: 6.572366e-02	ci left: 8.525181e-03	ci right 9.106968e-03	k: 3525	n:400000
Cons ci ratio: 1.755887e-02	ci left: 1.098214e-01	ci right 1.117693e-01	k: 44317	n:400000
KS ci ratio: 1.143364e-01	ci left: 2.762431e-03	ci right 3.099833e-03	k: 1171	n:400000
UBQLNL   400000 perm   156 sec   (2559 perm/sec)   p_kst 2.927500e-03   p_cons 1.107925e-01   p_joint 8.812500e-03

Joint ci ratio: 6.480108e-02	ci left: 8.559576e-03	ci right 9.135202e-03	k: 3626	n:410000
Cons ci ratio: 1.733782e-02	ci left: 1.098966e-01	ci right 1.118211e-01	k: 45451	n:410000
KS ci ratio: 1.129005e-01	ci left: 2.766146e-03	ci right 3.099477e-03	k: 1201	n:410000
UBQLNL   410000 perm   162 sec   (2532 perm/sec)   p_kst 2.929268e-03   p_cons 1.108561e-01   p_joint 8.843902e-03

Joint ci ratio: 6.586013e-02	ci left: 8.088717e-03	ci right 8.641907e-03	k: 3512	n:420000
Cons ci ratio: 1.712740e-02	ci left: 1.099400e-01	ci right 1.118416e-01	k: 46573	n:420000
KS ci ratio: 1.112460e-01	ci left: 2.783598e-03	ci right 3.113794e-03	k: 1237	n:420000
UBQLNL   420000 perm   168 sec   (2506 perm/sec)   p_kst 2.945238e-03   p_cons 1.108881e-01   p_joint 8.361905e-03

Joint ci ratio: 8.861457e-02	ci left: 4.329421e-03	ci right 4.733114e-03	k: 1947	n:430000
Cons ci ratio: 1.691071e-02	ci left: 1.101413e-01	ci right 1.120221e-01	k: 47764	n:430000
KS ci ratio: 1.115665e-01	ci left: 2.703032e-03	ci right 3.024655e-03	k: 1230	n:430000
UBQLNL   430000 perm   173 sec   (2481 perm/sec)   p_kst 2.860465e-03   p_cons 1.110791e-01   p_joint 4.527907e-03

Joint ci ratio: 8.752029e-02	ci left: 4.339937e-03	ci right 4.739358e-03	k: 1996	n:440000
Cons ci ratio: 1.671856e-02	ci left: 1.101389e-01	ci right 1.119980e-01	k: 48869	n:440000
KS ci ratio: 1.101875e-01	ci left: 2.710101e-03	ci right 3.028320e-03	k: 1261	n:440000
UBQLNL   440000 perm   179 sec   (2456 perm/sec)   p_kst 2.865909e-03   p_cons 1.110659e-01   p_joint 4.536364e-03

Joint ci ratio: 8.661454e-02	ci left: 4.334795e-03	ci right 4.729404e-03	k: 2038	n:450000
Cons ci ratio: 1.652983e-02	ci left: 1.101721e-01	ci right 1.120106e-01	k: 49990	n:450000
KS ci ratio: 1.090275e-01	ci left: 2.708231e-03	ci right 3.022669e-03	k: 1288	n:450000
UBQLNL   450000 perm   185 sec   (2432 perm/sec)   p_kst 2.862222e-03   p_cons 1.110889e-01   p_joint 4.528889e-03

Joint ci ratio: 8.715716e-02	ci left: 4.187379e-03	ci right 4.571078e-03	k: 2013	n:460000
Cons ci ratio: 1.634790e-02	ci left: 1.101976e-01	ci right 1.120160e-01	k: 51108	n:460000
KS ci ratio: 1.079035e-01	ci left: 2.706460e-03	ci right 3.017246e-03	k: 1315	n:460000
UBQLNL   460000 perm   191 sec   (2405 perm/sec)   p_kst 2.858696e-03   p_cons 1.111043e-01   p_joint 4.376087e-03

Joint ci ratio: 8.636805e-02	ci left: 4.175300e-03	ci right 4.554254e-03	k: 2050	n:470000
Cons ci ratio: 1.617323e-02	ci left: 1.102050e-01	ci right 1.120040e-01	k: 52218	n:470000
KS ci ratio: 1.070536e-01	ci left: 2.692354e-03	ci right 2.998932e-03	k: 1336	n:470000
UBQLNL   470000 perm   198 sec   (2378 perm/sec)   p_kst 2.842553e-03   p_cons 1.111021e-01   p_joint 4.361702e-03

Joint ci ratio: 7.550964e-02	ci left: 5.372442e-03	ci right 5.796059e-03	k: 2679	n:480000
Cons ci ratio: 1.599713e-02	ci left: 1.102974e-01	ci right 1.120781e-01	k: 53369	n:480000
KS ci ratio: 1.057559e-01	ci left: 2.703184e-03	ci right 3.007032e-03	k: 1369	n:480000
UBQLNL   480000 perm   204 sec   (2354 perm/sec)   p_kst 2.852083e-03   p_cons 1.111854e-01   p_joint 5.581250e-03

Joint ci ratio: 6.959711e-02	ci left: 6.208706e-03	ci right 6.658384e-03	k: 3151	n:490000
Cons ci ratio: 1.582781e-02	ci left: 1.103719e-01	ci right 1.121348e-01	k: 54513	n:490000
KS ci ratio: 1.046540e-01	ci left: 2.705644e-03	ci right 3.006405e-03	k: 1398	n:490000
UBQLNL   490000 perm   210 sec   (2331 perm/sec)   p_kst 2.853061e-03   p_cons 1.112510e-01   p_joint 6.430612e-03

Joint ci ratio: 6.924874e-02	ci left: 6.147414e-03	ci right 6.590335e-03	k: 3183	n:500000
Cons ci ratio: 1.567468e-02	ci left: 1.103059e-01	ci right 1.120506e-01	k: 55588	n:500000
KS ci ratio: 1.034407e-01	ci left: 2.715814e-03	ci right 3.013993e-03	k: 1431	n:500000
UBQLNL   500000 perm   217 sec   (2308 perm/sec)   p_kst 2.862000e-03   p_cons 1.111760e-01   p_joint 6.366000e-03

Joint ci ratio: 6.900275e-02	ci left: 6.071187e-03	ci right 6.506999e-03	k: 3206	n:510000
Cons ci ratio: 1.552530e-02	ci left: 1.102505e-01	ci right 1.119775e-01	k: 56667	n:510000
KS ci ratio: 1.023036e-01	ci left: 2.723694e-03	ci right 3.019253e-03	k: 1463	n:510000
UBQLNL   510000 perm   223 sec   (2285 perm/sec)   p_kst 2.868627e-03   p_cons 1.111118e-01   p_joint 6.286275e-03

Joint ci ratio: 6.841908e-02	ci left: 6.058384e-03	ci right 6.489452e-03	k: 3261	n:520000
Cons ci ratio: 1.537711e-02	ci left: 1.102356e-01	ci right 1.119457e-01	k: 57766	n:520000
KS ci ratio: 1.015441e-01	ci left: 2.712544e-03	ci right 3.004577e-03	k: 1485	n:520000
UBQLNL   520000 perm   230 sec   (2262 perm/sec)   p_kst 2.855769e-03   p_cons 1.110885e-01   p_joint 6.271154e-03

Joint ci ratio: 6.822352e-02	ci left: 5.979303e-03	ci right 6.403480e-03	k: 3280	n:530000
Cons ci ratio: 1.523206e-02	ci left: 1.102345e-01	ci right 1.119283e-01	k: 58872	n:530000
KS ci ratio: 1.007344e-01	ci left: 2.705501e-03	ci right 2.994316e-03	k: 1509	n:530000
UBQLNL   530000 perm   237 sec   (2240 perm/sec)   p_kst 2.847170e-03   p_cons 1.110792e-01   p_joint 6.188679e-03

Joint ci ratio: 6.781280e-02	ci left: 5.941386e-03	ci right 6.360236e-03	k: 3320	n:540000
Cons ci ratio: 1.508808e-02	ci left: 1.102722e-01	ci right 1.119505e-01	k: 59999	n:540000
KS ci ratio: 9.948940e-02	ci left: 2.724009e-03	ci right 3.010996e-03	k: 1547	n:540000
UBQLNL   540000 perm   243 sec   (2220 perm/sec)   p_kst 2.864815e-03   p_cons 1.111093e-01   p_joint 6.148148e-03

Outputting figure to mutsig2_images.part000000000186/UBQLNL.5_1432_540000_0.0028648_0.11111_0.0061481.png
                gene_name: UBQLNL
               theta_stop: 0.099 
                    nperm: 540000 
                     p_ks: 0.0029 
        ci_ks_bounds_left: 0.0027 
       ci_ks_bounds_right: 0.0030 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.0061 
     ci_joint_bounds_left: 0.0059 
    ci_joint_bounds_right: 0.0064 

Current progress: 50 percent done.
UBXN11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.522995e-02	ci left: 3.256490e-01	ci right 3.442472e-01	k: 3349	n:10000
Cons ci ratio: 1.609972e-02	ci left: 8.486593e-01	ci right 8.625329e-01	k: 8557	n:10000
KS ci ratio: 7.262567e-02	ci left: 2.173399e-01	ci right 2.338202e-01	k: 2255	n:10000
UBXN11   10000 perm   2 sec   (5412 perm/sec)   p_kst 2.255000e-01   p_cons 8.557000e-01   p_joint 3.349000e-01

Outputting figure to mutsig2_images.part000000000186/UBXN11.5_1619_10000_0.2255_0.8557_0.3349.png
                gene_name: UBXN11
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 52 percent done.
UBXN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.056996e-02	ci left: 2.861716e-01	ci right 3.041479e-01	k: 2951	n:10000
Cons ci ratio: 1.673668e-01	ci left: 4.763334e-02	ci right 5.642994e-02	k: 519	n:10000
KS ci ratio: 1.498109e-02	ci left: 8.659064e-01	ci right 8.790757e-01	k: 8726	n:10000
UBXN4   10000 perm   2 sec   (6196 perm/sec)   p_kst 8.726000e-01   p_cons 5.190000e-02   p_joint 2.951000e-01

Joint ci ratio: 5.679772e-02	ci left: 1.868581e-01	ci right 1.978315e-01	k: 3846	n:20000
Cons ci ratio: 1.182289e-01	ci left: 4.901182e-02	ci right 5.521921e-02	k: 1041	n:20000
KS ci ratio: 1.081496e-02	ci left: 8.631288e-01	ci right 8.725639e-01	k: 17358	n:20000
UBXN4   20000 perm   4 sec   (5350 perm/sec)   p_kst 8.679000e-01   p_cons 5.205000e-02   p_joint 1.923000e-01

Joint ci ratio: 4.572638e-02	ci left: 1.922478e-01	ci right 2.012777e-01	k: 5902	n:30000
Cons ci ratio: 9.745865e-02	ci left: 4.866769e-02	ci right 5.368635e-02	k: 1534	n:30000
KS ci ratio: 8.850645e-03	ci left: 8.634763e-01	ci right 8.711857e-01	k: 26021	n:30000
UBXN4   30000 perm   6 sec   (5051 perm/sec)   p_kst 8.673667e-01   p_cons 5.113333e-02   p_joint 1.967333e-01

Outputting figure to mutsig2_images.part000000000186/UBXN4.5_1579_30000_0.86737_0.051133_0.19673.png
                gene_name: UBXN4
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.051 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 53 percent done.
UBN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.043788e-01	ci left: 1.171118e-01	ci right 1.301083e-01	k: 1235	n:10000
Cons ci ratio: 7.426411e-02	ci left: 2.097433e-01	ci right 2.260214e-01	k: 2178	n:10000
KS ci ratio: 1.092244e-01	ci left: 1.078341e-01	ci right 1.203917e-01	k: 1140	n:10000
UBN2   10000 perm   2 sec   (4420 perm/sec)   p_kst 1.140000e-01   p_cons 2.178000e-01   p_joint 1.235000e-01

Joint ci ratio: 7.396201e-02	ci left: 1.185766e-01	ci right 1.277333e-01	k: 2462	n:20000
Cons ci ratio: 5.200999e-02	ci left: 2.154141e-01	ci right 2.269671e-01	k: 4423	n:20000
KS ci ratio: 7.904471e-02	ci left: 1.051552e-01	ci right 1.138587e-01	k: 2189	n:20000
UBN2   20000 perm   5 sec   (4045 perm/sec)   p_kst 1.094500e-01   p_cons 2.211500e-01   p_joint 1.231000e-01

Outputting figure to mutsig2_images.part000000000186/UBN2.4_4116_20000_0.10945_0.22115_0.1231.png
                gene_name: UBN2
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 55 percent done.
UFD1L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.770207e-02	ci left: 5.095531e-01	ci right 5.292356e-01	k: 5194	n:10000
Cons ci ratio: 3.359399e-02	ci left: 5.667444e-01	ci right 5.862110e-01	k: 5765	n:10000
KS ci ratio: 4.487681e-02	ci left: 4.229601e-01	ci right 4.424791e-01	k: 4327	n:10000
UFD1L   10000 perm   2 sec   (5790 perm/sec)   p_kst 4.327000e-01   p_cons 5.765000e-01   p_joint 5.194000e-01

Outputting figure to mutsig2_images.part000000000186/UFD1L.4_972_10000_0.4327_0.5765_0.5194.png
                gene_name: UFD1L
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 57 percent done.
UGDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.164532e-02	ci left: 4.598782e-01	ci right 4.795394e-01	k: 4697	n:10000
Cons ci ratio: 7.156145e-02	ci left: 2.224724e-01	ci right 2.390847e-01	k: 2307	n:10000
KS ci ratio: 3.071196e-02	ci left: 6.100009e-01	ci right 6.291294e-01	k: 6196	n:10000
UGDH   10000 perm   2 sec   (5753 perm/sec)   p_kst 6.196000e-01   p_cons 2.307000e-01   p_joint 4.697000e-01

Outputting figure to mutsig2_images.part000000000186/UGDH.4_1529_10000_0.6196_0.2307_0.4697.png
                gene_name: UGDH
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 58 percent done.
UBL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.220386e-02	ci left: 9.059684e-01	ci right 9.171905e-01	k: 9117	n:10000
Cons ci ratio: 4.757356e-02	ci left: 3.946604e-01	ci right 4.139954e-01	k: 4043	n:10000
KS ci ratio: 4.041214e-02	ci left: 4.748604e-01	ci right 4.945485e-01	k: 4847	n:10000
UBL3   10000 perm   2 sec   (6661 perm/sec)   p_kst 4.847000e-01   p_cons 4.043000e-01   p_joint 9.117000e-01

Outputting figure to mutsig2_images.part000000000186/UBL3.3_374_10000_0.4847_0.4043_0.9117.png
                gene_name: UBL3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 60 percent done.
UBLCP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.259309e-02	ci left: 5.814892e-01	ci right 6.008577e-01	k: 5912	n:10000
KS ci ratio: 2.721712e-02	ci left: 6.654179e-01	ci right 6.838802e-01	k: 6747	n:10000
UBLCP1   10000 perm   2 sec   (5926 perm/sec)   p_kst 6.747000e-01   p_cons 5.912000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UBLCP1.3_997_10000_0.6747_0.5912_1.png
                gene_name: UBLCP1
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
UBQLN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.676892e-02	ci left: 5.220620e-01	ci right 5.417194e-01	k: 5319	n:10000
Cons ci ratio: 2.744056e-02	ci left: 6.617930e-01	ci right 6.803073e-01	k: 6711	n:10000
KS ci ratio: 5.352662e-02	ci left: 3.396528e-01	ci right 3.584352e-01	k: 3490	n:10000
UBQLN2   10000 perm   2 sec   (5794 perm/sec)   p_kst 3.490000e-01   p_cons 6.711000e-01   p_joint 5.319000e-01

Outputting figure to mutsig2_images.part000000000186/UBQLN2.3_1879_10000_0.349_0.6711_0.5319.png
                gene_name: UBQLN2
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 63 percent done.
UBXN2A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.219733e-02	ci left: 7.486720e-01	ci right 7.655780e-01	k: 7572	n:10000
KS ci ratio: 1.681007e-02	ci left: 8.374510e-01	ci right 8.517477e-01	k: 8447	n:10000
UBXN2A   10000 perm   2 sec   (6303 perm/sec)   p_kst 8.447000e-01   p_cons 7.572000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UBXN2A.3_804_10000_0.8447_0.7572_1.png
                gene_name: UBXN2A
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
UBXN6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.982159e-02	ci left: 2.913250e-01	ci right 3.093915e-01	k: 3003	n:10000
Cons ci ratio: 2.556333e-02	ci left: 6.925243e-01	ci right 7.105582e-01	k: 7016	n:10000
KS ci ratio: 7.289692e-02	ci left: 2.160571e-01	ci right 2.325038e-01	k: 2242	n:10000
UBXN6   10000 perm   2 sec   (6208 perm/sec)   p_kst 2.242000e-01   p_cons 7.016000e-01   p_joint 3.003000e-01

Outputting figure to mutsig2_images.part000000000186/UBXN6.3_1370_10000_0.2242_0.7016_0.3003.png
                gene_name: UBXN6
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 67 percent done.
UBXN7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.039137e-03	ci left: 9.961927e-01	ci right 9.983009e-01	k: 9974	n:10000
KS ci ratio: 2.141821e-02	ci left: 7.617251e-01	ci right 7.783173e-01	k: 7701	n:10000
UBXN7   10000 perm   2 sec   (6105 perm/sec)   p_kst 7.701000e-01   p_cons 9.974000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UBXN7.3_1514_10000_0.7701_0.9974_1.png
                gene_name: UBXN7
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
UGT1A5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.610905e-01	ci left: 5.138109e-02	ci right 6.047977e-02	k: 558	n:10000
Cons ci ratio: 1.621688e-01	ci left: 5.070795e-02	ci right 5.975335e-02	k: 551	n:10000
KS ci ratio: 2.131928e-01	ci left: 2.920604e-02	ci right 3.626959e-02	k: 326	n:10000
UGT1A5   10000 perm   2 sec   (5765 perm/sec)   p_kst 3.260000e-02   p_cons 5.510000e-02   p_joint 5.580000e-02

Joint ci ratio: 2.757897e-01	ci left: 8.621064e-03	ci right 1.142415e-02	k: 199	n:20000
Cons ci ratio: 1.189533e-01	ci left: 4.842873e-02	ci right 5.460248e-02	k: 1029	n:20000
KS ci ratio: 1.502791e-01	ci left: 3.042282e-02	ci right 3.541419e-02	k: 657	n:20000
UGT1A5   20000 perm   4 sec   (5090 perm/sec)   p_kst 3.285000e-02   p_cons 5.145000e-02   p_joint 9.950000e-03

Joint ci ratio: 2.197008e-01	ci left: 9.345984e-03	ci right 1.168360e-02	k: 314	n:30000
Cons ci ratio: 9.408279e-02	ci left: 5.212081e-02	ci right 5.729919e-02	k: 1640	n:30000
KS ci ratio: 1.228966e-01	ci left: 3.078084e-02	ci right 3.484363e-02	k: 983	n:30000
UGT1A5   30000 perm   6 sec   (4820 perm/sec)   p_kst 3.276667e-02   p_cons 5.466667e-02   p_joint 1.046667e-02

Joint ci ratio: 1.513199e-01	ci left: 1.525024e-02	ci right 1.777065e-02	k: 659	n:40000
Cons ci ratio: 8.157704e-02	ci left: 5.234436e-02	ci right 5.682058e-02	k: 2182	n:40000
KS ci ratio: 1.058908e-01	ci left: 3.136830e-02	ci right 3.489991e-02	k: 1324	n:40000
UGT1A5   40000 perm   9 sec   (4669 perm/sec)   p_kst 3.310000e-02   p_cons 5.455000e-02   p_joint 1.647500e-02

Joint ci ratio: 1.382709e-01	ci left: 1.472515e-02	ci right 1.693159e-02	k: 790	n:50000
Cons ci ratio: 7.344654e-02	ci left: 5.191693e-02	ci right 5.589507e-02	k: 2694	n:50000
KS ci ratio: 9.468966e-02	ci left: 3.156862e-02	ci right 3.472589e-02	k: 1656	n:50000
UGT1A5   50000 perm   11 sec   (4541 perm/sec)   p_kst 3.312000e-02   p_cons 5.388000e-02   p_joint 1.580000e-02

Joint ci ratio: 1.117377e-01	ci left: 1.897576e-02	ci right 2.123766e-02	k: 1205	n:60000
Cons ci ratio: 6.717915e-02	ci left: 5.189314e-02	ci right 5.551684e-02	k: 3221	n:60000
KS ci ratio: 8.729227e-02	ci left: 3.109545e-02	ci right 3.395000e-02	k: 1950	n:60000
UGT1A5   60000 perm   14 sec   (4434 perm/sec)   p_kst 3.250000e-02   p_cons 5.368333e-02   p_joint 2.008333e-02

Joint ci ratio: 1.920856e-01	ci left: 5.346081e-03	ci right 6.495455e-03	k: 413	n:70000
Cons ci ratio: 6.452374e-02	ci left: 4.846734e-02	ci right 5.171294e-02	k: 3505	n:70000
KS ci ratio: 8.080174e-02	ci left: 3.121266e-02	ci right 3.385485e-02	k: 2276	n:70000
UGT1A5   70000 perm   16 sec   (4340 perm/sec)   p_kst 3.251429e-02   p_cons 5.007143e-02   p_joint 5.900000e-03

Joint ci ratio: 1.521868e-01	ci left: 7.598747e-03	ci right 8.862306e-03	k: 657	n:80000
Cons ci ratio: 6.019736e-02	ci left: 4.882018e-02	ci right 5.186253e-02	k: 4026	n:80000
KS ci ratio: 7.572293e-02	ci left: 3.118379e-02	ci right 3.365027e-02	k: 2592	n:80000
UGT1A5   80000 perm   19 sec   (4251 perm/sec)   p_kst 3.240000e-02   p_cons 5.032500e-02   p_joint 8.212500e-03

Joint ci ratio: 1.439990e-01	ci left: 7.578304e-03	ci right 8.764835e-03	k: 734	n:90000
Cons ci ratio: 5.688285e-02	ci left: 4.869469e-02	ci right 5.155661e-02	k: 4510	n:90000
KS ci ratio: 7.139389e-02	ci left: 3.125276e-02	ci right 3.357750e-02	k: 2916	n:90000
UGT1A5   90000 perm   22 sec   (4164 perm/sec)   p_kst 3.240000e-02   p_cons 5.011111e-02   p_joint 8.155556e-03

Joint ci ratio: 1.248617e-01	ci left: 9.150244e-03	ci right 1.037844e-02	k: 975	n:100000
Cons ci ratio: 5.409590e-02	ci left: 4.853880e-02	ci right 5.124739e-02	k: 4988	n:100000
KS ci ratio: 6.751643e-02	ci left: 3.150790e-02	ci right 3.371932e-02	k: 3260	n:100000
UGT1A5   100000 perm   24 sec   (4088 perm/sec)   p_kst 3.260000e-02   p_cons 4.988000e-02   p_joint 9.750000e-03

Joint ci ratio: 1.266979e-01	ci left: 8.080387e-03	ci right 9.182119e-03	k: 948	n:110000
Cons ci ratio: 5.161755e-02	ci left: 4.853081e-02	ci right 5.111117e-02	k: 5479	n:110000
KS ci ratio: 6.456163e-02	ci left: 3.137936e-02	ci right 3.348175e-02	k: 3566	n:110000
UGT1A5   110000 perm   27 sec   (4014 perm/sec)   p_kst 3.241818e-02   p_cons 4.980909e-02   p_joint 8.618182e-03

Joint ci ratio: 1.240072e-01	ci left: 7.745962e-03	ci right 8.778014e-03	k: 990	n:120000
Cons ci ratio: 4.951681e-02	ci left: 4.840300e-02	ci right 5.086882e-02	k: 5955	n:120000
KS ci ratio: 6.176611e-02	ci left: 3.147102e-02	ci right 3.348499e-02	k: 3896	n:120000
UGT1A5   120000 perm   30 sec   (3940 perm/sec)   p_kst 3.246667e-02   p_cons 4.962500e-02   p_joint 8.250000e-03

Joint ci ratio: 8.748900e-02	ci left: 1.454191e-02	ci right 1.587985e-02	k: 1976	n:130000
Cons ci ratio: 4.766889e-02	ci left: 4.826626e-02	ci right 5.063081e-02	k: 6427	n:130000
KS ci ratio: 5.931213e-02	ci left: 3.154267e-02	ci right 3.347826e-02	k: 4225	n:130000
UGT1A5   130000 perm   34 sec   (3871 perm/sec)   p_kst 3.250000e-02   p_cons 4.943846e-02   p_joint 1.520000e-02

Outputting figure to mutsig2_images.part000000000186/UGT1A5.3_1625_130000_0.0325_0.049438_0.0152.png
                gene_name: UGT1A5
               theta_stop: 0.087 
                    nperm: 130000 
                     p_ks: 0.033 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.049 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.051 
                  p_joint: 0.015 
     ci_joint_bounds_left: 0.015 
    ci_joint_bounds_right: 0.016 

Current progress: 70 percent done.
UGT2B28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.258607e-02	ci left: 3.477017e-01	ci right 3.665816e-01	k: 3571	n:10000
Cons ci ratio: 5.530440e-02	ci left: 3.250533e-01	ci right 3.436433e-01	k: 3343	n:10000
KS ci ratio: 5.023176e-02	ci left: 3.688810e-01	ci right 3.879899e-01	k: 3784	n:10000
UGT2B28   10000 perm   2 sec   (6023 perm/sec)   p_kst 3.784000e-01   p_cons 3.343000e-01   p_joint 3.571000e-01

Outputting figure to mutsig2_images.part000000000186/UGT2B28.3_1614_10000_0.3784_0.3343_0.3571.png
                gene_name: UGT2B28
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 72 percent done.
UGT2B4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.829882e-02	ci left: 8.134449e-01	ci right 8.285676e-01	k: 8211	n:10000
KS ci ratio: 1.099754e-02	ci left: 9.218292e-01	ci right 9.321204e-01	k: 9271	n:10000
UGT2B4   10000 perm   2 sec   (6053 perm/sec)   p_kst 9.271000e-01   p_cons 8.211000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UGT2B4.3_1611_10000_0.9271_0.8211_1.png
                gene_name: UGT2B4
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
UHMK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.907922e-02	ci left: 6.355301e-01	ci right 6.543853e-01	k: 6450	n:10000
Cons ci ratio: 5.144913e-02	ci left: 3.577420e-01	ci right 3.767354e-01	k: 3672	n:10000
KS ci ratio: 3.757392e-02	ci left: 5.112540e-01	ci right 5.309337e-01	k: 5211	n:10000
UHMK1   10000 perm   2 sec   (6218 perm/sec)   p_kst 5.211000e-01   p_cons 3.672000e-01   p_joint 6.450000e-01

Outputting figure to mutsig2_images.part000000000186/UHMK1.3_1342_10000_0.5211_0.3672_0.645.png
                gene_name: UHMK1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.65 

Current progress: 75 percent done.
UBIAD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.268333e-01	ci left: 1.861361e-03	ci right 4.044256e-03	k: 28	n:10000
Cons ci ratio: 2.240477e-01	ci left: 2.636581e-02	ci right 3.311184e-02	k: 296	n:10000
KS ci ratio: 7.268333e-01	ci left: 1.861361e-03	ci right 4.044256e-03	k: 28	n:10000
UBIAD1   10000 perm   1 sec   (6888 perm/sec)   p_kst 2.800000e-03   p_cons 2.960000e-02   p_joint 2.800000e-03

Joint ci ratio: 2.095217e-01	ci left: 1.539613e-02	ci right 1.904617e-02	k: 343	n:20000
Cons ci ratio: 1.621233e-01	ci left: 2.609357e-02	ci right 3.074488e-02	k: 567	n:20000
KS ci ratio: 5.139616e-01	ci left: 2.159255e-03	ci right 3.690949e-03	k: 57	n:20000
UBIAD1   20000 perm   3 sec   (5989 perm/sec)   p_kst 2.850000e-03   p_cons 2.835000e-02   p_joint 1.715000e-02

Joint ci ratio: 4.461444e-01	ci left: 1.996482e-03	ci right 3.169833e-03	k: 76	n:30000
Cons ci ratio: 1.321349e-01	ci left: 2.661392e-02	ci right 3.041145e-02	k: 854	n:30000
KS ci ratio: 4.461444e-01	ci left: 1.996482e-03	ci right 3.169833e-03	k: 76	n:30000
UBIAD1   30000 perm   5 sec   (5653 perm/sec)   p_kst 2.533333e-03   p_cons 2.846667e-02   p_joint 2.533333e-03

Joint ci ratio: 3.749513e-01	ci left: 2.215372e-03	ci right 3.258905e-03	k: 108	n:40000
Cons ci ratio: 1.154795e-01	ci left: 2.638084e-02	ci right 2.963817e-02	k: 1119	n:40000
KS ci ratio: 3.749513e-01	ci left: 2.215372e-03	ci right 3.258905e-03	k: 108	n:40000
UBIAD1   40000 perm   7 sec   (5423 perm/sec)   p_kst 2.700000e-03   p_cons 2.797500e-02   p_joint 2.700000e-03

Joint ci ratio: 3.407381e-01	ci left: 2.191025e-03	ci right 3.108239e-03	k: 131	n:50000
Cons ci ratio: 1.033263e-01	ci left: 2.653244e-02	ci right 2.944271e-02	k: 1398	n:50000
KS ci ratio: 3.407381e-01	ci left: 2.191025e-03	ci right 3.108239e-03	k: 131	n:50000
UBIAD1   50000 perm   10 sec   (5251 perm/sec)   p_kst 2.620000e-03   p_cons 2.796000e-02   p_joint 2.620000e-03

Joint ci ratio: 3.154743e-01	ci left: 2.162355e-03	ci right 2.986936e-03	k: 153	n:60000
Cons ci ratio: 9.449175e-02	ci left: 2.656423e-02	ci right 2.921503e-02	k: 1672	n:60000
KS ci ratio: 3.154743e-01	ci left: 2.162355e-03	ci right 2.986936e-03	k: 153	n:60000
UBIAD1   60000 perm   12 sec   (5112 perm/sec)   p_kst 2.550000e-03   p_cons 2.786667e-02   p_joint 2.550000e-03

Joint ci ratio: 2.959514e-01	ci left: 2.130451e-03	ci right 2.883164e-03	k: 174	n:70000
Cons ci ratio: 8.771000e-02	ci left: 2.652469e-02	ci right 2.897181e-02	k: 1941	n:70000
KS ci ratio: 2.959514e-01	ci left: 2.130451e-03	ci right 2.883164e-03	k: 174	n:70000
UBIAD1   70000 perm   14 sec   (4985 perm/sec)   p_kst 2.485714e-03   p_cons 2.772857e-02   p_joint 2.485714e-03

Joint ci ratio: 2.727658e-01	ci left: 2.224068e-03	ci right 2.937768e-03	k: 205	n:80000
Cons ci ratio: 8.253283e-02	ci left: 2.629195e-02	ci right 2.856750e-02	k: 2193	n:80000
KS ci ratio: 2.727658e-01	ci left: 2.224068e-03	ci right 2.937768e-03	k: 205	n:80000
UBIAD1   80000 perm   16 sec   (4856 perm/sec)   p_kst 2.562500e-03   p_cons 2.741250e-02   p_joint 2.562500e-03

Joint ci ratio: 2.564737e-01	ci left: 2.257071e-03	ci right 2.931183e-03	k: 232	n:90000
Cons ci ratio: 7.751057e-02	ci left: 2.656120e-02	ci right 2.871384e-02	k: 2486	n:90000
KS ci ratio: 2.564737e-01	ci left: 2.257071e-03	ci right 2.931183e-03	k: 232	n:90000
UBIAD1   90000 perm   19 sec   (4757 perm/sec)   p_kst 2.577778e-03   p_cons 2.762222e-02   p_joint 2.577778e-03

Joint ci ratio: 2.442073e-01	ci left: 2.256314e-03	ci right 2.893085e-03	k: 256	n:100000
Cons ci ratio: 7.283572e-02	ci left: 2.712373e-02	ci right 2.918376e-02	k: 2814	n:100000
KS ci ratio: 2.442073e-01	ci left: 2.256314e-03	ci right 2.893085e-03	k: 256	n:100000
UBIAD1   100000 perm   21 sec   (4654 perm/sec)   p_kst 2.560000e-03   p_cons 2.814000e-02   p_joint 2.560000e-03

Joint ci ratio: 2.339654e-01	ci left: 2.247763e-03	ci right 2.851669e-03	k: 279	n:110000
Cons ci ratio: 6.927944e-02	ci left: 2.730113e-02	ci right 2.926930e-02	k: 3110	n:110000
KS ci ratio: 2.339654e-01	ci left: 2.247763e-03	ci right 2.851669e-03	k: 279	n:110000
UBIAD1   110000 perm   24 sec   (4558 perm/sec)   p_kst 2.536364e-03   p_cons 2.827273e-02   p_joint 2.536364e-03

Joint ci ratio: 2.219937e-01	ci left: 2.304046e-03	ci right 2.887073e-03	k: 310	n:120000
Cons ci ratio: 6.652007e-02	ci left: 2.718863e-02	ci right 2.906760e-02	k: 3374	n:120000
KS ci ratio: 2.219937e-01	ci left: 2.304046e-03	ci right 2.887073e-03	k: 310	n:120000
UBIAD1   120000 perm   27 sec   (4465 perm/sec)   p_kst 2.583333e-03   p_cons 2.811667e-02   p_joint 2.583333e-03

Joint ci ratio: 2.151874e-01	ci left: 2.272232e-03	ci right 2.827252e-03	k: 330	n:130000
Cons ci ratio: 6.393968e-02	ci left: 2.720078e-02	ci right 2.900497e-02	k: 3652	n:130000
KS ci ratio: 2.151874e-01	ci left: 2.272232e-03	ci right 2.827252e-03	k: 330	n:130000
UBIAD1   130000 perm   30 sec   (4375 perm/sec)   p_kst 2.538462e-03   p_cons 2.809231e-02   p_joint 2.538462e-03

Joint ci ratio: 2.054790e-01	ci left: 2.326473e-03	ci right 2.865885e-03	k: 362	n:140000
Cons ci ratio: 6.171074e-02	ci left: 2.714909e-02	ci right 2.888482e-02	k: 3921	n:140000
KS ci ratio: 2.054790e-01	ci left: 2.326473e-03	ci right 2.865885e-03	k: 362	n:140000
UBIAD1   140000 perm   33 sec   (4294 perm/sec)   p_kst 2.585714e-03   p_cons 2.800714e-02   p_joint 2.585714e-03

Joint ci ratio: 1.982380e-01	ci left: 2.342281e-03	ci right 2.863908e-03	k: 389	n:150000
Cons ci ratio: 5.969241e-02	ci left: 2.711181e-02	ci right 2.878651e-02	k: 4191	n:150000
KS ci ratio: 1.982380e-01	ci left: 2.342281e-03	ci right 2.863908e-03	k: 389	n:150000
UBIAD1   150000 perm   36 sec   (4216 perm/sec)   p_kst 2.593333e-03   p_cons 2.794000e-02   p_joint 2.593333e-03

Joint ci ratio: 1.912530e-01	ci left: 2.368306e-03	ci right 2.874985e-03	k: 418	n:160000
Cons ci ratio: 5.751613e-02	ci left: 2.740045e-02	ci right 2.902921e-02	k: 4513	n:160000
KS ci ratio: 1.912530e-01	ci left: 2.368306e-03	ci right 2.874985e-03	k: 418	n:160000
UBIAD1   160000 perm   39 sec   (4135 perm/sec)   p_kst 2.612500e-03   p_cons 2.820625e-02   p_joint 2.612500e-03

Joint ci ratio: 1.835258e-01	ci left: 2.430835e-03	ci right 2.927543e-03	k: 454	n:170000
Cons ci ratio: 5.579362e-02	ci left: 2.742979e-02	ci right 2.900989e-02	k: 4796	n:170000
KS ci ratio: 1.835258e-01	ci left: 2.430835e-03	ci right 2.927543e-03	k: 454	n:170000
UBIAD1   170000 perm   42 sec   (4063 perm/sec)   p_kst 2.670588e-03   p_cons 2.821176e-02   p_joint 2.670588e-03

Joint ci ratio: 1.790579e-01	ci left: 2.417767e-03	ci right 2.898474e-03	k: 477	n:180000
Cons ci ratio: 5.426112e-02	ci left: 2.741266e-02	ci right 2.894703e-02	k: 5071	n:180000
KS ci ratio: 1.790579e-01	ci left: 2.417767e-03	ci right 2.898474e-03	k: 477	n:180000
UBIAD1   180000 perm   45 sec   (3993 perm/sec)   p_kst 2.650000e-03   p_cons 2.817222e-02   p_joint 2.650000e-03

Joint ci ratio: 1.749012e-01	ci left: 2.406205e-03	ci right 2.872334e-03	k: 500	n:190000
Cons ci ratio: 5.285342e-02	ci left: 2.739267e-02	ci right 2.888493e-02	k: 5345	n:190000
KS ci ratio: 1.749012e-01	ci left: 2.406205e-03	ci right 2.872334e-03	k: 500	n:190000
UBIAD1   190000 perm   48 sec   (3928 perm/sec)   p_kst 2.631579e-03   p_cons 2.813158e-02   p_joint 2.631579e-03

Joint ci ratio: 1.710211e-01	ci left: 2.395916e-03	ci right 2.848692e-03	k: 523	n:200000
Cons ci ratio: 5.161607e-02	ci left: 2.730602e-02	ci right 2.875770e-02	k: 5605	n:200000
KS ci ratio: 1.710211e-01	ci left: 2.395916e-03	ci right 2.848692e-03	k: 523	n:200000
UBIAD1   200000 perm   52 sec   (3864 perm/sec)   p_kst 2.615000e-03   p_cons 2.802500e-02   p_joint 2.615000e-03

Joint ci ratio: 1.672351e-01	ci left: 2.391272e-03	ci right 2.832160e-03	k: 547	n:210000
Cons ci ratio: 5.042636e-02	ci left: 2.726563e-02	ci right 2.868078e-02	k: 5873	n:210000
KS ci ratio: 1.672351e-01	ci left: 2.391272e-03	ci right 2.832160e-03	k: 547	n:210000
UBIAD1   210000 perm   55 sec   (3799 perm/sec)   p_kst 2.604762e-03   p_cons 2.796667e-02   p_joint 2.604762e-03

Joint ci ratio: 1.625541e-01	ci left: 2.422034e-03	ci right 2.854872e-03	k: 579	n:220000
Cons ci ratio: 4.924112e-02	ci left: 2.731010e-02	ci right 2.869329e-02	k: 6159	n:220000
KS ci ratio: 1.625541e-01	ci left: 2.422034e-03	ci right 2.854872e-03	k: 579	n:220000
UBIAD1   220000 perm   59 sec   (3738 perm/sec)   p_kst 2.631818e-03   p_cons 2.799545e-02   p_joint 2.631818e-03

Joint ci ratio: 1.596907e-01	ci left: 2.404349e-03	ci right 2.825732e-03	k: 600	n:230000
Cons ci ratio: 4.810884e-02	ci left: 2.738113e-02	ci right 2.873515e-02	k: 6452	n:230000
KS ci ratio: 1.596907e-01	ci left: 2.404349e-03	ci right 2.825732e-03	k: 600	n:230000
UBIAD1   230000 perm   63 sec   (3679 perm/sec)   p_kst 2.608696e-03   p_cons 2.805217e-02   p_joint 2.608696e-03

Joint ci ratio: 1.573545e-01	ci left: 2.376190e-03	ci right 2.785970e-03	k: 618	n:240000
Cons ci ratio: 4.701897e-02	ci left: 2.748365e-02	ci right 2.881111e-02	k: 6754	n:240000
KS ci ratio: 1.573545e-01	ci left: 2.376190e-03	ci right 2.785970e-03	k: 618	n:240000
UBIAD1   240000 perm   66 sec   (3623 perm/sec)   p_kst 2.575000e-03   p_cons 2.814167e-02   p_joint 2.575000e-03

Joint ci ratio: 1.541503e-01	ci left: 2.381090e-03	ci right 2.782581e-03	k: 644	n:250000
Cons ci ratio: 4.607391e-02	ci left: 2.749127e-02	ci right 2.879170e-02	k: 7034	n:250000
KS ci ratio: 1.541503e-01	ci left: 2.381090e-03	ci right 2.782581e-03	k: 644	n:250000
UBIAD1   250000 perm   70 sec   (3569 perm/sec)   p_kst 2.576000e-03   p_cons 2.813600e-02   p_joint 2.576000e-03

Joint ci ratio: 1.517020e-01	ci left: 2.367187e-03	ci right 2.759418e-03	k: 665	n:260000
Cons ci ratio: 4.513604e-02	ci left: 2.755561e-02	ci right 2.883186e-02	k: 7329	n:260000
KS ci ratio: 1.517020e-01	ci left: 2.367187e-03	ci right 2.759418e-03	k: 665	n:260000
UBIAD1   260000 perm   74 sec   (3517 perm/sec)   p_kst 2.557692e-03   p_cons 2.818846e-02   p_joint 2.557692e-03

Joint ci ratio: 1.483953e-01	ci left: 2.386454e-03	ci right 2.772495e-03	k: 695	n:270000
Cons ci ratio: 4.424126e-02	ci left: 2.763009e-02	ci right 2.888377e-02	k: 7628	n:270000
KS ci ratio: 1.483953e-01	ci left: 2.386454e-03	ci right 2.772495e-03	k: 695	n:270000
UBIAD1   270000 perm   78 sec   (3467 perm/sec)   p_kst 2.574074e-03   p_cons 2.825185e-02   p_joint 2.574074e-03

Joint ci ratio: 1.454969e-01	ci left: 2.397548e-03	ci right 2.777150e-03	k: 723	n:280000
Cons ci ratio: 4.340049e-02	ci left: 2.769594e-02	ci right 2.892813e-02	k: 7926	n:280000
KS ci ratio: 1.454969e-01	ci left: 2.397548e-03	ci right 2.777150e-03	k: 723	n:280000
UBIAD1   280000 perm   82 sec   (3416 perm/sec)   p_kst 2.582143e-03   p_cons 2.830714e-02   p_joint 2.582143e-03

Joint ci ratio: 1.425720e-01	ci left: 2.414596e-03	ci right 2.788558e-03	k: 753	n:290000
Cons ci ratio: 4.266733e-02	ci left: 2.767897e-02	ci right 2.888910e-02	k: 8201	n:290000
KS ci ratio: 1.425720e-01	ci left: 2.414596e-03	ci right 2.788558e-03	k: 753	n:290000
UBIAD1   290000 perm   86 sec   (3367 perm/sec)   p_kst 2.596552e-03   p_cons 2.827931e-02   p_joint 2.596552e-03

Joint ci ratio: 1.407194e-01	ci left: 2.398412e-03	ci right 2.764636e-03	k: 773	n:300000
Cons ci ratio: 4.190910e-02	ci left: 2.774249e-02	ci right 2.893331e-02	k: 8500	n:300000
KS ci ratio: 1.407194e-01	ci left: 2.398412e-03	ci right 2.764636e-03	k: 773	n:300000
UBIAD1   300000 perm   90 sec   (3321 perm/sec)   p_kst 2.576667e-03   p_cons 2.833333e-02   p_joint 2.576667e-03

Joint ci ratio: 1.387620e-01	ci left: 2.389530e-03	ci right 2.748902e-03	k: 795	n:310000
Cons ci ratio: 4.124541e-02	ci left: 2.772863e-02	ci right 2.889956e-02	k: 8776	n:310000
KS ci ratio: 1.387620e-01	ci left: 2.389530e-03	ci right 2.748902e-03	k: 795	n:310000
UBIAD1   310000 perm   95 sec   (3274 perm/sec)   p_kst 2.564516e-03   p_cons 2.830968e-02   p_joint 2.564516e-03

Joint ci ratio: 1.366331e-01	ci left: 2.390291e-03	ci right 2.743814e-03	k: 820	n:320000
Cons ci ratio: 4.060997e-02	ci left: 2.771887e-02	ci right 2.887094e-02	k: 9053	n:320000
KS ci ratio: 1.366331e-01	ci left: 2.390291e-03	ci right 2.743814e-03	k: 820	n:320000
UBIAD1   320000 perm   99 sec   (3230 perm/sec)   p_kst 2.562500e-03   p_cons 2.829062e-02   p_joint 2.562500e-03

Joint ci ratio: 1.349195e-01	ci left: 2.379331e-03	ci right 2.726466e-03	k: 841	n:330000
Cons ci ratio: 3.999421e-02	ci left: 2.772184e-02	ci right 2.885616e-02	k: 9334	n:330000
KS ci ratio: 1.349195e-01	ci left: 2.379331e-03	ci right 2.726466e-03	k: 841	n:330000
UBIAD1   330000 perm   104 sec   (3179 perm/sec)   p_kst 2.548485e-03   p_cons 2.828485e-02   p_joint 2.548485e-03

Joint ci ratio: 1.333462e-01	ci left: 2.366200e-03	ci right 2.707073e-03	k: 861	n:340000
Cons ci ratio: 3.943096e-02	ci left: 2.768980e-02	ci right 2.880649e-02	k: 9603	n:340000
KS ci ratio: 1.333462e-01	ci left: 2.366200e-03	ci right 2.707073e-03	k: 861	n:340000
UBIAD1   340000 perm   108 sec   (3136 perm/sec)   p_kst 2.532353e-03   p_cons 2.824412e-02   p_joint 2.532353e-03

Joint ci ratio: 1.311575e-01	ci left: 2.378711e-03	ci right 2.715324e-03	k: 890	n:350000
Cons ci ratio: 3.888882e-02	ci left: 2.766253e-02	ci right 2.876244e-02	k: 9873	n:350000
KS ci ratio: 1.311575e-01	ci left: 2.378711e-03	ci right 2.715324e-03	k: 890	n:350000
UBIAD1   350000 perm   113 sec   (3094 perm/sec)   p_kst 2.542857e-03   p_cons 2.820857e-02   p_joint 2.542857e-03

Joint ci ratio: 1.297822e-01	ci left: 2.363689e-03	ci right 2.694399e-03	k: 909	n:360000
Cons ci ratio: 3.835484e-02	ci left: 2.765614e-02	ci right 2.874036e-02	k: 10150	n:360000
KS ci ratio: 1.297822e-01	ci left: 2.363689e-03	ci right 2.694399e-03	k: 909	n:360000
UBIAD1   360000 perm   118 sec   (3053 perm/sec)   p_kst 2.525000e-03   p_cons 2.819444e-02   p_joint 2.525000e-03

Joint ci ratio: 1.277618e-01	ci left: 2.375660e-03	ci right 2.702478e-03	k: 938	n:370000
Cons ci ratio: 3.784973e-02	ci left: 2.763948e-02	ci right 2.870847e-02	k: 10423	n:370000
KS ci ratio: 1.277618e-01	ci left: 2.375660e-03	ci right 2.702478e-03	k: 938	n:370000
UBIAD1   370000 perm   123 sec   (3012 perm/sec)   p_kst 2.535135e-03   p_cons 2.817027e-02   p_joint 2.535135e-03

Joint ci ratio: 1.260943e-01	ci left: 2.376844e-03	ci right 2.699238e-03	k: 963	n:380000
Cons ci ratio: 3.731027e-02	ci left: 2.770202e-02	ci right 2.875782e-02	k: 10726	n:380000
KS ci ratio: 1.260943e-01	ci left: 2.376844e-03	ci right 2.699238e-03	k: 963	n:380000
UBIAD1   380000 perm   128 sec   (2975 perm/sec)   p_kst 2.534211e-03   p_cons 2.822632e-02   p_joint 2.534211e-03

Joint ci ratio: 1.246168e-01	ci left: 2.373024e-03	ci right 2.690850e-03	k: 986	n:390000
Cons ci ratio: 3.687243e-02	ci left: 2.764456e-02	ci right 2.868555e-02	k: 10983	n:390000
KS ci ratio: 1.246168e-01	ci left: 2.373024e-03	ci right 2.690850e-03	k: 986	n:390000
UBIAD1   390000 perm   133 sec   (2937 perm/sec)   p_kst 2.528205e-03   p_cons 2.816154e-02   p_joint 2.528205e-03

Joint ci ratio: 1.227039e-01	ci left: 2.388802e-03	ci right 2.703473e-03	k: 1017	n:400000
Cons ci ratio: 3.641799e-02	ci left: 2.763712e-02	ci right 2.866473e-02	k: 11259	n:400000
KS ci ratio: 1.227039e-01	ci left: 2.388802e-03	ci right 2.703473e-03	k: 1017	n:400000
UBIAD1   400000 perm   138 sec   (2902 perm/sec)   p_kst 2.542500e-03   p_cons 2.814750e-02   p_joint 2.542500e-03

Joint ci ratio: 1.213996e-01	ci left: 2.382558e-03	ci right 2.692832e-03	k: 1039	n:410000
Cons ci ratio: 3.599601e-02	ci left: 2.760594e-02	ci right 2.862026e-02	k: 11525	n:410000
KS ci ratio: 1.213996e-01	ci left: 2.382558e-03	ci right 2.692832e-03	k: 1039	n:410000
UBIAD1   410000 perm   143 sec   (2866 perm/sec)   p_kst 2.534146e-03   p_cons 2.810976e-02   p_joint 2.534146e-03

Joint ci ratio: 1.194614e-01	ci left: 2.404346e-03	ci right 2.712104e-03	k: 1073	n:420000
Cons ci ratio: 3.558215e-02	ci left: 2.758575e-02	ci right 2.858744e-02	k: 11795	n:420000
KS ci ratio: 1.194614e-01	ci left: 2.404346e-03	ci right 2.712104e-03	k: 1073	n:420000
UBIAD1   420000 perm   148 sec   (2831 perm/sec)   p_kst 2.554762e-03   p_cons 2.808333e-02   p_joint 2.554762e-03

Joint ci ratio: 1.184194e-01	ci left: 2.391301e-03	ci right 2.694533e-03	k: 1092	n:430000
Cons ci ratio: 3.515677e-02	ci left: 2.760577e-02	ci right 2.859595e-02	k: 12082	n:430000
KS ci ratio: 1.184194e-01	ci left: 2.391301e-03	ci right 2.694533e-03	k: 1092	n:430000
UBIAD1   430000 perm   154 sec   (2796 perm/sec)   p_kst 2.539535e-03   p_cons 2.809767e-02   p_joint 2.539535e-03

Joint ci ratio: 1.166702e-01	ci left: 2.409750e-03	ci right 2.710497e-03	k: 1125	n:440000
Cons ci ratio: 3.476365e-02	ci left: 2.759790e-02	ci right 2.857651e-02	k: 12357	n:440000
KS ci ratio: 1.166702e-01	ci left: 2.409750e-03	ci right 2.710497e-03	k: 1125	n:440000
UBIAD1   440000 perm   159 sec   (2760 perm/sec)   p_kst 2.556818e-03   p_cons 2.808409e-02   p_joint 2.556818e-03

Joint ci ratio: 1.149466e-01	ci left: 2.429568e-03	ci right 2.728005e-03	k: 1159	n:450000
Cons ci ratio: 3.436803e-02	ci left: 2.761468e-02	ci right 2.858252e-02	k: 12643	n:450000
KS ci ratio: 1.149466e-01	ci left: 2.429568e-03	ci right 2.728005e-03	k: 1159	n:450000
UBIAD1   450000 perm   165 sec   (2728 perm/sec)   p_kst 2.575556e-03   p_cons 2.809556e-02   p_joint 2.575556e-03

Joint ci ratio: 1.134879e-01	ci left: 2.440106e-03	ci right 2.735779e-03	k: 1189	n:460000
Cons ci ratio: 3.399103e-02	ci left: 2.762217e-02	ci right 2.857944e-02	k: 12925	n:460000
KS ci ratio: 1.134879e-01	ci left: 2.440106e-03	ci right 2.735779e-03	k: 1189	n:460000
UBIAD1   460000 perm   171 sec   (2696 perm/sec)   p_kst 2.584783e-03   p_cons 2.809783e-02   p_joint 2.584783e-03

Joint ci ratio: 1.120374e-01	ci left: 2.452287e-03	ci right 2.745387e-03	k: 1220	n:470000
Cons ci ratio: 3.362224e-02	ci left: 2.763572e-02	ci right 2.858288e-02	k: 13210	n:470000
KS ci ratio: 1.120374e-01	ci left: 2.452287e-03	ci right 2.745387e-03	k: 1220	n:470000
UBIAD1   470000 perm   176 sec   (2665 perm/sec)   p_kst 2.595745e-03   p_cons 2.810638e-02   p_joint 2.595745e-03

Joint ci ratio: 1.111316e-01	ci left: 2.441701e-03	ci right 2.731022e-03	k: 1240	n:480000
Cons ci ratio: 3.331094e-02	ci left: 2.757437e-02	ci right 2.851051e-02	k: 13459	n:480000
KS ci ratio: 1.111316e-01	ci left: 2.441701e-03	ci right 2.731022e-03	k: 1240	n:480000
UBIAD1   480000 perm   182 sec   (2636 perm/sec)   p_kst 2.583333e-03   p_cons 2.803958e-02   p_joint 2.583333e-03

Joint ci ratio: 1.096389e-01	ci left: 2.459344e-03	ci right 2.746588e-03	k: 1274	n:490000
Cons ci ratio: 3.295376e-02	ci left: 2.760464e-02	ci right 2.853156e-02	k: 13752	n:490000
KS ci ratio: 1.096389e-01	ci left: 2.459344e-03	ci right 2.746588e-03	k: 1274	n:490000
UBIAD1   490000 perm   188 sec   (2608 perm/sec)   p_kst 2.600000e-03   p_cons 2.806531e-02   p_joint 2.600000e-03

Joint ci ratio: 1.084961e-01	ci left: 2.462684e-03	ci right 2.747129e-03	k: 1301	n:500000
Cons ci ratio: 3.262576e-02	ci left: 2.760399e-02	ci right 2.852149e-02	k: 14030	n:500000
KS ci ratio: 1.084961e-01	ci left: 2.462684e-03	ci right 2.747129e-03	k: 1301	n:500000
UBIAD1   500000 perm   194 sec   (2579 perm/sec)   p_kst 2.602000e-03   p_cons 2.806000e-02   p_joint 2.602000e-03

Joint ci ratio: 1.073477e-01	ci left: 2.467816e-03	ci right 2.749646e-03	k: 1329	n:510000
Cons ci ratio: 3.230155e-02	ci left: 2.761313e-02	ci right 2.852165e-02	k: 14313	n:510000
KS ci ratio: 1.073477e-01	ci left: 2.467816e-03	ci right 2.749646e-03	k: 1329	n:510000
UBIAD1   510000 perm   200 sec   (2551 perm/sec)   p_kst 2.605882e-03   p_cons 2.806471e-02   p_joint 2.605882e-03

Joint ci ratio: 1.064712e-01	ci left: 2.461534e-03	ci right 2.740208e-03	k: 1351	n:520000
Cons ci ratio: 3.202409e-02	ci left: 2.755900e-02	ci right 2.845781e-02	k: 14563	n:520000
KS ci ratio: 1.064712e-01	ci left: 2.461534e-03	ci right 2.740208e-03	k: 1351	n:520000
UBIAD1   520000 perm   206 sec   (2524 perm/sec)   p_kst 2.598077e-03   p_cons 2.800577e-02   p_joint 2.598077e-03

Joint ci ratio: 1.052706e-01	ci left: 2.472033e-03	ci right 2.748544e-03	k: 1382	n:530000
Cons ci ratio: 3.170963e-02	ci left: 2.758183e-02	ci right 2.847239e-02	k: 14853	n:530000
KS ci ratio: 1.052706e-01	ci left: 2.472033e-03	ci right 2.748544e-03	k: 1382	n:530000
UBIAD1   530000 perm   212 sec   (2497 perm/sec)   p_kst 2.607547e-03   p_cons 2.802453e-02   p_joint 2.607547e-03

Joint ci ratio: 1.045182e-01	ci left: 2.462319e-03	ci right 2.735654e-03	k: 1402	n:540000
Cons ci ratio: 3.142348e-02	ci left: 2.757079e-02	ci right 2.845281e-02	k: 15125	n:540000
KS ci ratio: 1.045182e-01	ci left: 2.462319e-03	ci right 2.735654e-03	k: 1402	n:540000
UBIAD1   540000 perm   219 sec   (2470 perm/sec)   p_kst 2.596296e-03   p_cons 2.800926e-02   p_joint 2.596296e-03

Joint ci ratio: 1.037451e-01	ci left: 2.454736e-03	ci right 2.725091e-03	k: 1423	n:550000
Cons ci ratio: 3.114806e-02	ci left: 2.755476e-02	ci right 2.842840e-02	k: 15394	n:550000
KS ci ratio: 1.037451e-01	ci left: 2.454736e-03	ci right 2.725091e-03	k: 1423	n:550000
UBIAD1   550000 perm   225 sec   (2445 perm/sec)   p_kst 2.587273e-03   p_cons 2.798909e-02   p_joint 2.587273e-03

Joint ci ratio: 1.030605e-01	ci left: 2.443952e-03	ci right 2.711235e-03	k: 1442	n:560000
Cons ci ratio: 3.090819e-02	ci left: 2.748971e-02	ci right 2.835446e-02	k: 15635	n:560000
KS ci ratio: 1.030605e-01	ci left: 2.443952e-03	ci right 2.711235e-03	k: 1442	n:560000
UBIAD1   560000 perm   231 sec   (2420 perm/sec)   p_kst 2.575000e-03   p_cons 2.791964e-02   p_joint 2.575000e-03

Joint ci ratio: 1.023542e-01	ci left: 2.435262e-03	ci right 2.699659e-03	k: 1462	n:570000
Cons ci ratio: 3.062816e-02	ci left: 2.750708e-02	ci right 2.836440e-02	k: 15922	n:570000
KS ci ratio: 1.023542e-01	ci left: 2.435262e-03	ci right 2.699659e-03	k: 1462	n:570000
UBIAD1   570000 perm   238 sec   (2397 perm/sec)   p_kst 2.564912e-03   p_cons 2.793333e-02   p_joint 2.564912e-03

Joint ci ratio: 1.014566e-01	ci left: 2.436960e-03	ci right 2.699083e-03	k: 1488	n:580000
Cons ci ratio: 3.036717e-02	ci left: 2.750334e-02	ci right 2.835311e-02	k: 16197	n:580000
KS ci ratio: 1.014566e-01	ci left: 2.436960e-03	ci right 2.699083e-03	k: 1488	n:580000
UBIAD1   580000 perm   244 sec   (2373 perm/sec)   p_kst 2.565517e-03   p_cons 2.792586e-02   p_joint 2.565517e-03

Joint ci ratio: 1.005489e-01	ci left: 2.440262e-03	ci right 2.700254e-03	k: 1515	n:590000
Cons ci ratio: 3.011368e-02	ci left: 2.749807e-02	ci right 2.834047e-02	k: 16471	n:590000
KS ci ratio: 1.005489e-01	ci left: 2.440262e-03	ci right 2.700254e-03	k: 1515	n:590000
UBIAD1   590000 perm   251 sec   (2350 perm/sec)   p_kst 2.567797e-03   p_cons 2.791695e-02   p_joint 2.567797e-03

Joint ci ratio: 9.950371e-02	ci left: 2.451591e-03	ci right 2.709916e-03	k: 1547	n:600000
Cons ci ratio: 2.987103e-02	ci left: 2.748474e-02	ci right 2.831983e-02	k: 16740	n:600000
KS ci ratio: 9.950371e-02	ci left: 2.451591e-03	ci right 2.709916e-03	k: 1547	n:600000
UBIAD1   600000 perm   258 sec   (2327 perm/sec)   p_kst 2.578333e-03   p_cons 2.790000e-02   p_joint 2.578333e-03

Outputting figure to mutsig2_images.part000000000186/UBIAD1.2_1025_600000_0.0025783_0.0279_0.0025783.png
                gene_name: UBIAD1
               theta_stop: 0.100 
                    nperm: 600000 
                     p_ks: 0.0026 
        ci_ks_bounds_left: 0.0025 
       ci_ks_bounds_right: 0.0027 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.028 
                  p_joint: 0.0026 
     ci_joint_bounds_left: 0.0025 
    ci_joint_bounds_right: 0.0027 

Current progress: 77 percent done.
UBQLN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.918346e-02	ci left: 7.989230e-01	ci right 8.144979e-01	k: 8068	n:10000
KS ci ratio: 1.014468e-02	ci left: 9.323699e-01	ci right 9.419735e-01	k: 9373	n:10000
UBQLN1   10000 perm   2 sec   (6173 perm/sec)   p_kst 9.373000e-01   p_cons 8.068000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UBQLN1.2_1814_10000_0.9373_0.8068_1.png
                gene_name: UBQLN1
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
UBTD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.890920e-02	ci left: 2.977686e-01	ci right 3.159440e-01	k: 3068	n:10000
Cons ci ratio: 1.005180e-01	ci left: 1.253257e-01	ci right 1.386894e-01	k: 1319	n:10000
KS ci ratio: 6.651176e-02	ci left: 2.491493e-01	ci right 2.663920e-01	k: 2577	n:10000
UBTD1   10000 perm   1 sec   (7399 perm/sec)   p_kst 2.577000e-01   p_cons 1.319000e-01   p_joint 3.068000e-01

Joint ci ratio: 1.310140e-02	ci left: 8.119747e-01	ci right 8.227329e-01	k: 16348	n:20000
Cons ci ratio: 7.585322e-02	ci left: 1.133139e-01	ci right 1.222976e-01	k: 2355	n:20000
KS ci ratio: 4.701899e-02	ci left: 2.517979e-01	ci right 2.639726e-01	k: 5157	n:20000
UBTD1   20000 perm   3 sec   (6361 perm/sec)   p_kst 2.578500e-01   p_cons 1.177500e-01   p_joint 8.174000e-01

Outputting figure to mutsig2_images.part000000000186/UBTD1.2_696_20000_0.25785_0.11775_0.8174.png
                gene_name: UBTD1
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 80 percent done.
UBTD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.098776e-01	ci left: 1.066631e-01	ci right 1.191634e-01	k: 1128	n:10000
Cons ci ratio: 9.909574e-02	ci left: 1.285551e-01	ci right 1.420581e-01	k: 1352	n:10000
KS ci ratio: 4.348773e-02	ci left: 4.384192e-01	ci right 4.580110e-01	k: 4482	n:10000
UBTD2   10000 perm   1 sec   (7306 perm/sec)   p_kst 4.482000e-01   p_cons 1.352000e-01   p_joint 1.128000e-01

Joint ci ratio: 7.802814e-02	ci left: 1.076609e-01	ci right 1.164522e-01	k: 2240	n:20000
Cons ci ratio: 7.034327e-02	ci left: 1.296521e-01	ci right 1.391545e-01	k: 2687	n:20000
KS ci ratio: 3.083093e-02	ci left: 4.400427e-01	ci right 4.538727e-01	k: 8939	n:20000
UBTD2   20000 perm   3 sec   (6296 perm/sec)   p_kst 4.469500e-01   p_cons 1.343500e-01   p_joint 1.120000e-01

Outputting figure to mutsig2_images.part000000000186/UBTD2.2_717_20000_0.44695_0.13435_0.112.png
                gene_name: UBTD2
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 82 percent done.
UBXN2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.669991e-02	ci left: 1.990953e-01	ci right 2.150757e-01	k: 2070	n:10000
Cons ci ratio: 9.825754e-02	ci left: 1.305129e-01	ci right 1.440991e-01	k: 1372	n:10000
KS ci ratio: 1.036624e-01	ci left: 1.185779e-01	ci right 1.316413e-01	k: 1250	n:10000
UBXN2B   10000 perm   2 sec   (6608 perm/sec)   p_kst 1.250000e-01   p_cons 1.372000e-01   p_joint 2.070000e-01

Joint ci ratio: 6.820389e-02	ci left: 1.368941e-01	ci right 1.466103e-01	k: 2834	n:20000
Cons ci ratio: 7.010243e-02	ci left: 1.304401e-01	ci right 1.399662e-01	k: 2703	n:20000
KS ci ratio: 7.285306e-02	ci left: 1.218242e-01	ci right 1.310847e-01	k: 2528	n:20000
UBXN2B   20000 perm   3 sec   (5777 perm/sec)   p_kst 1.264000e-01   p_cons 1.351500e-01   p_joint 1.417000e-01

Outputting figure to mutsig2_images.part000000000186/UBXN2B.2_1028_20000_0.1264_0.13515_0.1417.png
                gene_name: UBXN2B
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 83 percent done.
UCHL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.904075e-02	ci left: 1.895391e-01	ci right 2.052376e-01	k: 1973	n:10000
Cons ci ratio: 8.843771e-02	ci left: 1.568896e-01	ci right 1.715066e-01	k: 1641	n:10000
KS ci ratio: 3.472158e-02	ci left: 5.505053e-01	ci right 5.700595e-01	k: 5603	n:10000
UCHL1   10000 perm   1 sec   (6965 perm/sec)   p_kst 5.603000e-01   p_cons 1.641000e-01   p_joint 1.973000e-01

Outputting figure to mutsig2_images.part000000000186/UCHL1.2_708_10000_0.5603_0.1641_0.1973.png
                gene_name: UCHL1
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 85 percent done.
UCHL3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.208993e-02	ci left: 5.890154e-01	ci right 6.083271e-01	k: 5987	n:10000
Cons ci ratio: 3.128144e-02	ci left: 6.012631e-01	ci right 6.204723e-01	k: 6109	n:10000
KS ci ratio: 4.283441e-02	ci left: 4.459028e-01	ci right 4.655230e-01	k: 4557	n:10000
UCHL3   10000 perm   1 sec   (6930 perm/sec)   p_kst 4.557000e-01   p_cons 6.109000e-01   p_joint 5.987000e-01

Outputting figure to mutsig2_images.part000000000186/UCHL3.2_729_10000_0.4557_0.6109_0.5987.png
                gene_name: UCHL3
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 87 percent done.
UCP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.684207e-02	ci left: 8.369418e-01	ci right 8.512571e-01	k: 8442	n:10000
Cons ci ratio: 7.174331e-02	ci left: 2.215840e-01	ci right 2.381737e-01	k: 2298	n:10000
KS ci ratio: 7.188542e-02	ci left: 2.208930e-01	ci right 2.374651e-01	k: 2291	n:10000
UCP3   10000 perm   1 sec   (6685 perm/sec)   p_kst 2.291000e-01   p_cons 2.298000e-01   p_joint 8.442000e-01

Outputting figure to mutsig2_images.part000000000186/UCP3.2_967_10000_0.2291_0.2298_0.8442.png
                gene_name: UCP3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 88 percent done.
UFSP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.632823e-02	ci left: 2.006723e-01	ci right 2.166978e-01	k: 2086	n:10000
Cons ci ratio: 1.558433e-01	ci left: 5.484605e-02	ci right 6.421259e-02	k: 594	n:10000
KS ci ratio: 2.231802e-02	ci left: 7.466492e-01	ci right 7.636020e-01	k: 7552	n:10000
UFSP2   10000 perm   2 sec   (6444 perm/sec)   p_kst 7.552000e-01   p_cons 5.940000e-02   p_joint 2.086000e-01

Joint ci ratio: 8.026407e-02	ci left: 1.022572e-01	ci right 1.108575e-01	k: 2130	n:20000
Cons ci ratio: 1.080444e-01	ci left: 5.840428e-02	ci right 6.512383e-02	k: 1234	n:20000
KS ci ratio: 1.583252e-02	ci left: 7.479695e-01	ci right 7.599565e-01	k: 15080	n:20000
UFSP2   20000 perm   4 sec   (5563 perm/sec)   p_kst 7.540000e-01   p_cons 6.170000e-02   p_joint 1.065000e-01

Joint ci ratio: 5.705182e-02	ci left: 1.320739e-01	ci right 1.398634e-01	k: 4078	n:30000
Cons ci ratio: 8.810456e-02	ci left: 5.916639e-02	ci right 6.465217e-02	k: 1856	n:30000
KS ci ratio: 1.290168e-02	ci left: 7.498235e-01	ci right 7.595937e-01	k: 22642	n:30000
UFSP2   30000 perm   6 sec   (5252 perm/sec)   p_kst 7.547333e-01   p_cons 6.186667e-02   p_joint 1.359333e-01

Outputting figure to mutsig2_images.part000000000186/UFSP2.2_1458_30000_0.75473_0.061867_0.13593.png
                gene_name: UFSP2
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 90 percent done.
UGCG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.104303e-02	ci left: 7.680025e-01	ci right 7.844363e-01	k: 7763	n:10000
KS ci ratio: 3.262006e-02	ci left: 5.810878e-01	ci right 6.004593e-01	k: 5908	n:10000
UGCG   10000 perm   2 sec   (6539 perm/sec)   p_kst 5.908000e-01   p_cons 7.763000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UGCG.2_1221_10000_0.5908_0.7763_1.png
                gene_name: UGCG
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
UGT1A3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.996961e-01	ci left: 3.338573e-02	ci right 4.088702e-02	k: 370	n:10000
Cons ci ratio: 1.194462e-02	ci left: 9.094652e-01	ci right 9.204916e-01	k: 9151	n:10000
KS ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
UGT1A3   10000 perm   2 sec   (6231 perm/sec)   p_kst 8.800000e-03   p_cons 9.151000e-01   p_joint 3.700000e-02

Joint ci ratio: 9.415636e-02	ci left: 7.598287e-02	ci right 8.353984e-02	k: 1594	n:20000
Cons ci ratio: 8.343617e-03	ci left: 9.130396e-01	ci right 9.207387e-01	k: 18339	n:20000
KS ci ratio: 2.830257e-01	ci left: 8.155818e-03	ci right 1.088963e-02	k: 189	n:20000
UGT1A3   20000 perm   4 sec   (5444 perm/sec)   p_kst 9.450000e-03   p_cons 9.169500e-01   p_joint 7.970000e-02

Joint ci ratio: 7.611232e-02	ci left: 7.813316e-02	ci right 8.434822e-02	k: 2436	n:30000
Cons ci ratio: 6.808357e-03	ci left: 9.138548e-01	ci right 9.201308e-01	k: 27511	n:30000
KS ci ratio: 2.357281e-01	ci left: 8.056540e-03	ci right 1.024011e-02	k: 273	n:30000
UGT1A3   30000 perm   6 sec   (5170 perm/sec)   p_kst 9.100000e-03   p_cons 9.170333e-01   p_joint 8.120000e-02

Joint ci ratio: 9.881879e-02	ci left: 3.597658e-02	ci right 3.974090e-02	k: 1513	n:40000
Cons ci ratio: 5.885679e-03	ci left: 9.145580e-01	ci right 9.199813e-01	k: 36692	n:40000
KS ci ratio: 2.028439e-01	ci left: 8.311372e-03	ci right 1.021090e-02	k: 369	n:40000
UGT1A3   40000 perm   8 sec   (4975 perm/sec)   p_kst 9.225000e-03   p_cons 9.173000e-01   p_joint 3.782500e-02

Joint ci ratio: 8.825321e-02	ci left: 3.628226e-02	ci right 3.965165e-02	k: 1897	n:50000
Cons ci ratio: 5.272527e-03	ci left: 9.146083e-01	ci right 9.194631e-01	k: 45853	n:50000
KS ci ratio: 1.821264e-01	ci left: 8.343543e-03	ci right 1.003418e-02	k: 458	n:50000
UGT1A3   50000 perm   10 sec   (4825 perm/sec)   p_kst 9.160000e-03   p_cons 9.170600e-01   p_joint 3.794000e-02

Joint ci ratio: 8.085217e-02	ci left: 3.617367e-02	ci right 3.923792e-02	k: 2261	n:60000
Cons ci ratio: 4.794913e-03	ci left: 9.154049e-01	ci right 9.198212e-01	k: 55058	n:60000
KS ci ratio: 1.662277e-01	ci left: 8.419580e-03	ci right 9.961789e-03	k: 550	n:60000
UGT1A3   60000 perm   13 sec   (4702 perm/sec)   p_kst 9.166667e-03   p_cons 9.176333e-01   p_joint 3.768333e-02

Joint ci ratio: 7.467838e-02	ci left: 3.645537e-02	ci right 3.929739e-02	k: 2650	n:70000
Cons ci ratio: 4.422945e-03	ci left: 9.161308e-01	ci right 9.202059e-01	k: 64273	n:70000
KS ci ratio: 1.517477e-01	ci left: 8.725900e-03	ci right 1.017234e-02	k: 660	n:70000
UGT1A3   70000 perm   15 sec   (4590 perm/sec)   p_kst 9.428571e-03   p_cons 9.181857e-01   p_joint 3.785714e-02

Joint ci ratio: 3.139994e-02	ci left: 1.604837e-01	ci right 1.656157e-01	k: 13043	n:80000
Cons ci ratio: 4.134453e-03	ci left: 9.163679e-01	ci right 9.201767e-01	k: 73463	n:80000
KS ci ratio: 1.426569e-01	ci left: 8.682620e-03	ci right 1.002832e-02	k: 747	n:80000
UGT1A3   80000 perm   18 sec   (4470 perm/sec)   p_kst 9.337500e-03   p_cons 9.182875e-01   p_joint 1.630375e-01

Joint ci ratio: 3.537153e-02	ci left: 1.179498e-01	ci right 1.222080e-01	k: 10806	n:90000
Cons ci ratio: 3.910049e-03	ci left: 9.160089e-01	ci right 9.196085e-01	k: 82604	n:90000
KS ci ratio: 1.349442e-01	ci left: 8.661717e-03	ci right 9.925770e-03	k: 835	n:90000
UGT1A3   90000 perm   21 sec   (4371 perm/sec)   p_kst 9.277778e-03   p_cons 9.178222e-01   p_joint 1.200667e-01

Joint ci ratio: 3.367087e-02	ci left: 1.173467e-01	ci right 1.213754e-01	k: 11935	n:100000
Cons ci ratio: 3.706239e-03	ci left: 9.162319e-01	ci right 9.196438e-01	k: 91795	n:100000
KS ci ratio: 1.285012e-01	ci left: 8.627205e-03	ci right 9.821521e-03	k: 921	n:100000
UGT1A3   100000 perm   23 sec   (4276 perm/sec)   p_kst 9.210000e-03   p_cons 9.179500e-01   p_joint 1.193500e-01

Joint ci ratio: 3.796743e-02	ci left: 8.666566e-02	ci right 9.002880e-02	k: 9717	n:110000
Cons ci ratio: 3.538330e-03	ci left: 9.161154e-01	ci right 9.193716e-01	k: 100953	n:110000
KS ci ratio: 1.233960e-01	ci left: 8.529641e-03	ci right 9.660106e-03	k: 999	n:110000
UGT1A3   110000 perm   26 sec   (4195 perm/sec)   p_kst 9.081818e-03   p_cons 9.177545e-01   p_joint 8.833636e-02

Joint ci ratio: 3.075571e-02	ci left: 1.173966e-01	ci right 1.210718e-01	k: 14307	n:120000
Cons ci ratio: 3.394138e-03	ci left: 9.158955e-01	ci right 9.190177e-01	k: 110096	n:120000
KS ci ratio: 1.181377e-01	ci left: 8.554273e-03	ci right 9.636317e-03	k: 1090	n:120000
UGT1A3   120000 perm   29 sec   (4121 perm/sec)   p_kst 9.083333e-03   p_cons 9.174667e-01   p_joint 1.192250e-01

Joint ci ratio: 2.948689e-02	ci left: 1.179095e-01	ci right 1.214459e-01	k: 15557	n:130000
Cons ci ratio: 3.259925e-03	ci left: 9.160068e-01	ci right 9.190053e-01	k: 119277	n:130000
KS ci ratio: 1.128267e-01	ci left: 8.680652e-03	ci right 9.726032e-03	k: 1195	n:130000
UGT1A3   130000 perm   32 sec   (4036 perm/sec)   p_kst 9.192308e-03   p_cons 9.175154e-01   p_joint 1.196692e-01

Joint ci ratio: 2.840636e-02	ci left: 1.180323e-01	ci right 1.214406e-01	k: 16762	n:140000
Cons ci ratio: 3.142396e-03	ci left: 9.160106e-01	ci right 9.189007e-01	k: 128445	n:140000
KS ci ratio: 1.093238e-01	ci left: 8.602251e-03	ci right 9.603953e-03	k: 1273	n:140000
UGT1A3   140000 perm   35 sec   (3959 perm/sec)   p_kst 9.092857e-03   p_cons 9.174643e-01   p_joint 1.197286e-01

Joint ci ratio: 3.243268e-02	ci left: 8.730555e-02	ci right 9.019037e-02	k: 13311	n:150000
Cons ci ratio: 3.033249e-03	ci left: 9.161903e-01	ci right 9.189802e-01	k: 137639	n:150000
KS ci ratio: 1.056169e-01	ci left: 8.619132e-03	ci right 9.586652e-03	k: 1364	n:150000
UGT1A3   150000 perm   39 sec   (3893 perm/sec)   p_kst 9.093333e-03   p_cons 9.175933e-01   p_joint 8.874000e-02

Joint ci ratio: 3.145080e-02	ci left: 8.710646e-02	ci right 8.989597e-02	k: 14159	n:160000
Cons ci ratio: 2.938253e-03	ci left: 9.161664e-01	ci right 9.188685e-01	k: 146804	n:160000
KS ci ratio: 1.023696e-01	ci left: 8.616131e-03	ci right 9.551788e-03	k: 1452	n:160000
UGT1A3   160000 perm   42 sec   (3833 perm/sec)   p_kst 9.075000e-03   p_cons 9.175250e-01   p_joint 8.849375e-02

Joint ci ratio: 3.055746e-02	ci left: 8.690861e-02	ci right 8.961133e-02	k: 15003	n:170000
Cons ci ratio: 2.853316e-03	ci left: 9.160577e-01	ci right 9.186810e-01	k: 155954	n:170000
KS ci ratio: 9.960038e-02	ci left: 8.579462e-03	ci right 9.484459e-03	k: 1534	n:170000
UGT1A3   170000 perm   45 sec   (3762 perm/sec)   p_kst 9.023529e-03   p_cons 9.173765e-01   p_joint 8.825294e-02

Outputting figure to mutsig2_images.part000000000186/UGT1A3.2_1625_170000_0.0090235_0.91738_0.088253.png
                gene_name: UGT1A3
               theta_stop: 0.100 
                    nperm: 170000 
                     p_ks: 0.0090 
        ci_ks_bounds_left: 0.0086 
       ci_ks_bounds_right: 0.0095 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.088 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.090 

Current progress: 93 percent done.
UGT1A4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.196429e-02	ci left: 4.560841e-01	ci right 4.757357e-01	k: 4659	n:10000
KS ci ratio: 5.719572e-02	ci left: 3.103647e-01	ci right 3.287406e-01	k: 3195	n:10000
UGT1A4   10000 perm   2 sec   (6154 perm/sec)   p_kst 3.195000e-01   p_cons 4.659000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UGT1A4.2_1625_10000_0.3195_0.4659_1.png
                gene_name: UGT1A4
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
UGT1A7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.998584e-02	ci left: 2.303719e-01	ci right 2.471805e-01	k: 2387	n:10000
Cons ci ratio: 1.376601e-01	ci left: 6.981515e-02	ci right 8.023404e-02	k: 749	n:10000
KS ci ratio: 5.509389e-02	ci left: 3.267412e-01	ci right 3.453544e-01	k: 3360	n:10000
UGT1A7   10000 perm   2 sec   (6218 perm/sec)   p_kst 3.360000e-01   p_cons 7.490000e-02   p_joint 2.387000e-01

Joint ci ratio: 5.977956e-02	ci left: 1.716339e-01	ci right 1.822602e-01	k: 3538	n:20000
Cons ci ratio: 9.977223e-02	ci left: 6.806427e-02	ci right 7.526086e-02	k: 1432	n:20000
KS ci ratio: 3.907977e-02	ci left: 3.281098e-01	ci right 3.412383e-01	k: 6693	n:20000
UGT1A7   20000 perm   4 sec   (5431 perm/sec)   p_kst 3.346500e-01   p_cons 7.160000e-02   p_joint 1.769000e-01

Outputting figure to mutsig2_images.part000000000186/UGT1A7.2_1613_20000_0.33465_0.0716_0.1769.png
                gene_name: UGT1A7
               theta_stop: 0.100 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.075 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 97 percent done.
UGT2B15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.824610e-02	ci left: 6.488086e-01	ci right 6.674992e-01	k: 6582	n:10000
KS ci ratio: 2.151493e-02	ci left: 7.601055e-01	ci right 7.767378e-01	k: 7685	n:10000
UGT2B15   10000 perm   2 sec   (5191 perm/sec)   p_kst 7.685000e-01   p_cons 6.582000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000186/UGT2B15.2_3234_10000_0.7685_0.6582_1.png
                gene_name: UGT2B15
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
UHRF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.827831e-02	ci left: 3.023301e-01	ci right 3.205799e-01	k: 3114	n:10000
Cons ci ratio: 2.331010e-01	ci left: 2.428868e-02	ci right 3.079048e-02	k: 274	n:10000
KS ci ratio: 2.760851e-02	ci left: 6.590747e-01	ci right 6.776271e-01	k: 6684	n:10000
UHRF1   10000 perm   2 sec   (5691 perm/sec)   p_kst 6.684000e-01   p_cons 2.740000e-02   p_joint 3.114000e-01

Joint ci ratio: 4.018921e-02	ci left: 3.158241e-01	ci right 3.288276e-01	k: 6446	n:20000
Cons ci ratio: 1.660773e-01	ci left: 2.484562e-02	ci right 2.939326e-02	k: 541	n:20000
KS ci ratio: 1.952729e-02	ci left: 6.617257e-01	ci right 6.748253e-01	k: 13366	n:20000
UHRF1   20000 perm   4 sec   (5010 perm/sec)   p_kst 6.683000e-01   p_cons 2.705000e-02   p_joint 3.223000e-01

Joint ci ratio: 3.086504e-02	ci left: 3.442354e-01	ci right 3.550604e-01	k: 10489	n:30000
Cons ci ratio: 1.347532e-01	ci left: 2.558194e-02	ci right 2.931033e-02	k: 822	n:30000
KS ci ratio: 1.587948e-02	ci left: 6.647466e-01	ci right 6.754204e-01	k: 20103	n:30000
UHRF1   30000 perm   6 sec   (4737 perm/sec)   p_kst 6.701000e-01   p_cons 2.740000e-02   p_joint 3.496333e-01

Joint ci ratio: 2.613196e-02	ci left: 3.552939e-01	ci right 3.647264e-01	k: 14400	n:40000
Cons ci ratio: 1.171583e-01	ci left: 2.562780e-02	ci right 2.884133e-02	k: 1088	n:40000
KS ci ratio: 1.374512e-02	ci left: 6.656934e-01	ci right 6.749318e-01	k: 26813	n:40000
UHRF1   40000 perm   9 sec   (4572 perm/sec)   p_kst 6.703250e-01   p_cons 2.720000e-02   p_joint 3.600000e-01

Joint ci ratio: 9.372861e-02	ci left: 3.221357e-02	ci right 3.540086e-02	k: 1689	n:50000
Cons ci ratio: 1.042888e-01	ci left: 2.604508e-02	ci right 2.893013e-02	k: 1373	n:50000
KS ci ratio: 1.229920e-02	ci left: 6.659991e-01	ci right 6.742611e-01	k: 33507	n:50000
UHRF1   50000 perm   11 sec   (4439 perm/sec)   p_kst 6.701400e-01   p_cons 2.746000e-02   p_joint 3.378000e-02

Joint ci ratio: 8.527977e-02	ci left: 3.256413e-02	ci right 3.548117e-02	k: 2040	n:60000
Cons ci ratio: 9.460815e-02	ci left: 2.649910e-02	ci right 2.914684e-02	k: 1668	n:60000
KS ci ratio: 1.125191e-02	ci left: 6.654021e-01	ci right 6.729482e-01	k: 40151	n:60000
UHRF1   60000 perm   14 sec   (4328 perm/sec)   p_kst 6.691833e-01   p_cons 2.780000e-02   p_joint 3.400000e-02

Outputting figure to mutsig2_images.part000000000186/UHRF1.2_2484_60000_0.66918_0.0278_0.034.png
                gene_name: UHRF1
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.028 
      ci_cons_bounds_left: 0.026 
     ci_cons_bounds_right: 0.029 
                  p_joint: 0.034 
     ci_joint_bounds_left: 0.033 
    ci_joint_bounds_right: 0.035 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000186
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 186 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1713>
Subject: Job 9894200: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1713>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000187> was used as the working directory.
Started at Sat Oct  6 00:35:22 2012
Results reported at Sat Oct  6 00:46:18 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000187.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000187.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 187  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000187.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    693.33 sec.
    Max Memory :      3388 MB
    Max Swap   :      5927 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
187
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 187
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 187: processing genes 16769 - 16858
Calculating significance of each gene.
Using projection method.
16769	UHRF2	8.536800e-01
16770	UIMC1	2.764569e-01
16771	ULBP1	3.008101e-01
16772	ULBP2	3.173221e-01
16773	ULBP3	1
16774	ULK1	9.681310e-01
16775	ULK2	8.600126e-01
16776	ULK3	1.945433e-01
16777	ULK4	4.323281e-01
16778	UMOD	2.799448e-02
16779	UMODL1	9.024539e-01
16780	UMPS	8.625998e-01
In gene UNC119 the following bins exceed PROBCAP:
    COAD-AA-3980	categ 6	N = 602     n = 1	mu =   8.55e-07
16781	UNC119	4.136319e-01
16782	UNC119B	1
16783	UNC13A	5.729338e-01
16784	UNC13B	3.014192e-02
16785	UNC13C	3.223569e-03
In gene UNC13D the following bins exceed PROBCAP:
    COAD-AA-A00K	categ 6	N = 2684    n = 1	mu =   5.86e-07
16786	UNC13D	6.343130e-01
16787	UNC45A	7.223618e-01
16788	UNC45B	3.882237e-01
16789	UNC50	5.890358e-01
In gene UNC5A the following bins exceed PROBCAP:
    READ-AF-2692	categ 6	N = 1426    n = 1	mu =   1.72e-07
16790	UNC5A	7.364169e-01
16791	UNC5B	5.553819e-01
16792	UNC5C	2.260988e-03
16793	UNC5CL	9.235986e-01
16794	UNC5D	6.936637e-01
16795	UNC93A	3.083227e-01
16796	UNC93B1	1
16797	UNG	8.364151e-01
16798	UNK	6.632303e-01
16799	UNKL	7.048613e-01
16800	UPB1	4.665970e-02
16801	UPF1	9.740267e-01
16802	UPF2	1.825378e-01
16803	UPF3A	4.829860e-01
16804	UPF3B	6.561420e-02
16805	UPK1A	3.356544e-01
16806	UPK1B	2.510048e-01
16807	UPK2	3.434425e-01
16808	UPK3A	6.434773e-01
16809	UPK3B	6.946179e-01
16810	UPP1	1
16811	UPP2	2.845173e-01
16812	UPRT	1.284988e-01
16813	UQCC	7.108247e-01
16814	UQCR10	1
16815	UQCR11	1
16816	UQCRB	7.508391e-02
16817	UQCRC1	5.240701e-01
16818	UQCRC2	2.554092e-01
16819	UQCRFS1	6.217929e-01
16820	UQCRH	2.141981e-01
16821	UQCRHL	1
16822	UQCRQ	1
16823	URB2	4.873344e-01
16824	URGCP	8.738949e-01
16825	URM1	1
16826	UROC1	6.268116e-01
16827	UROD	8.691509e-01
16828	UROS	4.941846e-01
16829	USE1	1
16830	USF1	5.152912e-01
16831	USF2	6.780847e-01
16832	USH1C	7.717784e-01
16833	USH1G	5.149953e-01
In gene USH2A the following bins exceed PROBCAP:
    COAD-AA-3560	categ 6	N = 15903   n = 1	mu =   2.76e-07
16834	USH2A	1.117973e-02
16835	USHBP1	9.494379e-02
16836	USMG5	1
16837	USO1	8.507109e-01
16838	USP1	9.197318e-01
16839	USP10	1.331098e-01
16840	USP11	4.685098e-01
16841	USP12	8.142139e-01
16842	USP13	4.602439e-01
16843	USP14	8.174508e-01
16844	USP15	2.946077e-01
16845	USP16	2.753325e-01
16846	USP17L2	1.107242e-03
16847	USP18	5.842669e-01
In gene USP19 the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 4008    n = 1	mu =   4.60e-07
16848	USP19	7.685188e-01
16849	USP2	1.458213e-01
16850	USP20	9.016062e-01
16851	USP21	4.803545e-01
16852	USP22	7.650980e-01
16853	USP24	9.524824e-01
16854	USP25	4.029034e-01
16855	USP26	1.009691e-01
16856	USP28	1.317377e-02
16857	USP29	1.473641e-01
16858	USP3	9.750642e-02
Done

Running MutSig 2:
Scatter job 187: processing genes 16769 - 16858
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
USH2A
Processing conservation and coverage...
62% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.045198e-02	ci left: 6.140194e-01	ci right 6.331085e-01	k: 6236	n:10000
Cons ci ratio: 4.268795e-02	ci left: 4.475994e-01	ci right 4.672254e-01	k: 4574	n:10000
KS ci ratio: 3.931972e-02	ci left: 4.885519e-01	ci right 5.082490e-01	k: 4984	n:10000
USH2A   10000 perm   4 sec   (2296 perm/sec)   p_kst 4.984000e-01   p_cons 4.574000e-01   p_joint 6.236000e-01

Outputting figure to mutsig2_images.part000000000187/USH2A.52_15907_10000_0.4984_0.4574_0.6236.png
                gene_name: USH2A
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 2 percent done.
UNC13C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.365803e-01	ci left: 7.088017e-02	ci right 8.136835e-02	k: 760	n:10000
Cons ci ratio: 1.592875e-01	ci left: 5.253552e-02	ci right 6.172460e-02	k: 570	n:10000
KS ci ratio: 7.128045e-02	ci left: 2.238545e-01	ci right 2.405018e-01	k: 2321	n:10000
UNC13C   10000 perm   3 sec   (3583 perm/sec)   p_kst 2.321000e-01   p_cons 5.700000e-02   p_joint 7.600000e-02

Joint ci ratio: 7.622039e-02	ci left: 1.123305e-01	ci right 1.212812e-01	k: 2335	n:20000
Cons ci ratio: 1.024545e-01	ci left: 6.469544e-02	ci right 7.173072e-02	k: 1363	n:20000
KS ci ratio: 4.947432e-02	ci left: 2.329541e-01	ci right 2.448219e-01	k: 4777	n:20000
UNC13C   20000 perm   6 sec   (3310 perm/sec)   p_kst 2.388500e-01   p_cons 6.815000e-02   p_joint 1.167500e-01

Joint ci ratio: 6.952952e-02	ci left: 9.245933e-02	ci right 9.915252e-02	k: 2873	n:30000
Cons ci ratio: 8.493098e-02	ci left: 6.347731e-02	ci right 6.914037e-02	k: 1988	n:30000
KS ci ratio: 4.069419e-02	ci left: 2.314027e-01	ci right 2.410484e-01	k: 7086	n:30000
UNC13C   30000 perm   9 sec   (3208 perm/sec)   p_kst 2.362000e-01   p_cons 6.626667e-02   p_joint 9.576667e-02

Outputting figure to mutsig2_images.part000000000187/UNC13C.24_6769_30000_0.2362_0.066267_0.095767.png
                gene_name: UNC13C
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.099 

Current progress: 3 percent done.
UNC13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.092244e-01	ci left: 1.078341e-01	ci right 1.203917e-01	k: 1140	n:10000
Cons ci ratio: 3.423102e-02	ci left: 5.575209e-01	ci right 5.770399e-01	k: 5673	n:10000
KS ci ratio: 2.980694e-01	ci left: 1.446512e-02	ci right 1.962175e-02	k: 169	n:10000
UNC13A   10000 perm   2 sec   (4706 perm/sec)   p_kst 1.690000e-02   p_cons 5.673000e-01   p_joint 1.140000e-01

Joint ci ratio: 1.151709e-01	ci left: 5.158846e-02	ci right 5.794177e-02	k: 1094	n:20000
Cons ci ratio: 2.647234e-02	ci left: 5.159999e-01	ci right 5.298935e-01	k: 10459	n:20000
KS ci ratio: 2.136671e-01	ci left: 1.478008e-02	ci right 1.836246e-02	k: 330	n:20000
UNC13A   20000 perm   5 sec   (4281 perm/sec)   p_kst 1.650000e-02   p_cons 5.229500e-01   p_joint 5.470000e-02

Joint ci ratio: 1.155139e-01	ci left: 3.482746e-02	ci right 3.912947e-02	k: 1108	n:30000
Cons ci ratio: 2.169826e-02	ci left: 5.153619e-01	ci right 5.267007e-01	k: 15631	n:30000
KS ci ratio: 1.765505e-01	ci left: 1.473800e-02	ci right 1.762346e-02	k: 484	n:30000
UNC13A   30000 perm   7 sec   (4113 perm/sec)   p_kst 1.613333e-02   p_cons 5.210333e-01   p_joint 3.693333e-02

Joint ci ratio: 1.004861e-01	ci left: 3.480541e-02	ci right 3.851225e-02	k: 1465	n:40000
Cons ci ratio: 1.875886e-02	ci left: 5.169909e-01	ci right 5.268060e-01	k: 20876	n:40000
KS ci ratio: 1.529780e-01	ci left: 1.491337e-02	ci right 1.740758e-02	k: 645	n:40000
UNC13A   40000 perm   10 sec   (4007 perm/sec)   p_kst 1.612500e-02   p_cons 5.219000e-01   p_joint 3.662500e-02

Joint ci ratio: 8.519664e-02	ci left: 3.888680e-02	ci right 4.236679e-02	k: 2030	n:50000
Cons ci ratio: 1.674631e-02	ci left: 5.184707e-01	ci right 5.272466e-01	k: 26143	n:50000
KS ci ratio: 1.367850e-01	ci left: 1.505362e-02	ci right 1.728307e-02	k: 807	n:50000
UNC13A   50000 perm   13 sec   (3923 perm/sec)   p_kst 1.614000e-02   p_cons 5.228600e-01   p_joint 4.060000e-02

Joint ci ratio: 8.421765e-02	ci left: 3.338040e-02	ci right 3.633148e-02	k: 2090	n:60000
Cons ci ratio: 1.482069e-02	ci left: 5.343009e-01	ci right 5.422954e-01	k: 32298	n:60000
KS ci ratio: 1.238072e-01	ci left: 1.541501e-02	ci right 1.746548e-02	k: 985	n:60000
UNC13A   60000 perm   16 sec   (3850 perm/sec)   p_kst 1.641667e-02   p_cons 5.383000e-01   p_joint 3.483333e-02

Joint ci ratio: 7.892237e-02	ci left: 3.269769e-02	ci right 3.539826e-02	k: 2382	n:70000
Cons ci ratio: 1.373593e-02	ci left: 5.340694e-01	ci right 5.414703e-01	k: 37644	n:70000
KS ci ratio: 1.150990e-01	ci left: 1.536102e-02	ci right 1.725081e-02	k: 1140	n:70000
UNC13A   70000 perm   18 sec   (3790 perm/sec)   p_kst 1.628571e-02   p_cons 5.377714e-01   p_joint 3.402857e-02

Joint ci ratio: 7.968389e-02	ci left: 2.819124e-02	ci right 3.054306e-02	k: 2348	n:80000
Cons ci ratio: 1.286910e-02	ci left: 5.335247e-01	ci right 5.404476e-01	k: 42959	n:80000
KS ci ratio: 1.069176e-01	ci left: 1.564075e-02	ci right 1.741956e-02	k: 1321	n:80000
UNC13A   80000 perm   21 sec   (3729 perm/sec)   p_kst 1.651250e-02   p_cons 5.369875e-01   p_joint 2.935000e-02

Joint ci ratio: 7.410200e-02	ci left: 2.903697e-02	ci right 3.128233e-02	k: 2713	n:90000
Cons ci ratio: 1.213607e-02	ci left: 5.336023e-01	ci right 5.401287e-01	k: 48318	n:90000
KS ci ratio: 1.008806e-01	ci left: 1.566697e-02	ci right 1.734218e-02	k: 1484	n:90000
UNC13A   90000 perm   25 sec   (3673 perm/sec)   p_kst 1.648889e-02   p_cons 5.368667e-01   p_joint 3.014444e-02

Joint ci ratio: 6.763443e-02	ci left: 3.139970e-02	ci right 3.360753e-02	k: 3249	n:100000
Cons ci ratio: 1.151114e-02	ci left: 5.338635e-01	ci right 5.400544e-01	k: 53696	n:100000
KS ci ratio: 9.523538e-02	ci left: 1.586598e-02	ci right 1.746224e-02	k: 1665	n:100000
UNC13A   100000 perm   28 sec   (3619 perm/sec)   p_kst 1.665000e-02   p_cons 5.369600e-01   p_joint 3.249000e-02

Outputting figure to mutsig2_images.part000000000187/UNC13A.14_5280_100000_0.01665_0.53696_0.03249.png
                gene_name: UNC13A
               theta_stop: 0.095 
                    nperm: 100000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.017 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.032 
     ci_joint_bounds_left: 0.031 
    ci_joint_bounds_right: 0.034 

Current progress: 5 percent done.
UNC13B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.964970e-02	ci left: 7.912118e-01	ci right 8.070136e-01	k: 7992	n:10000
Cons ci ratio: 5.994992e-02	ci left: 2.904329e-01	ci right 3.084840e-01	k: 2994	n:10000
KS ci ratio: 6.503433e-03	ci left: 9.699492e-01	ci right 9.763711e-01	k: 9733	n:10000
UNC13B   10000 perm   2 sec   (4217 perm/sec)   p_kst 9.733000e-01   p_cons 2.994000e-01   p_joint 7.992000e-01

Outputting figure to mutsig2_images.part000000000187/UNC13B.12_4932_10000_0.9733_0.2994_0.7992.png
                gene_name: UNC13B
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 7 percent done.
UNC5C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.921578e-02	ci left: 1.888498e-01	ci right 2.045273e-01	k: 1966	n:10000
Cons ci ratio: 2.059430e-02	ci left: 7.754984e-01	ci right 7.917361e-01	k: 7837	n:10000
KS ci ratio: 1.161806e-01	ci left: 9.623212e-02	ci right 1.082007e-01	k: 1021	n:10000
UNC5C   10000 perm   2 sec   (5123 perm/sec)   p_kst 1.021000e-01   p_cons 7.837000e-01   p_joint 1.966000e-01

Joint ci ratio: 6.042364e-02	ci left: 1.685710e-01	ci right 1.791240e-01	k: 3476	n:20000
Cons ci ratio: 1.498450e-02	ci left: 7.679877e-01	ci right 7.796326e-01	k: 15477	n:20000
KS ci ratio: 8.552611e-02	ci left: 9.097040e-02	ci right 9.914776e-02	k: 1900	n:20000
UNC5C   20000 perm   5 sec   (4363 perm/sec)   p_kst 9.500000e-02   p_cons 7.738500e-01   p_joint 1.738000e-01

Outputting figure to mutsig2_images.part000000000187/UNC5C.12_2860_20000_0.095_0.77385_0.1738.png
                gene_name: UNC5C
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 8 percent done.
UPF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.256613e-02	ci left: 5.818905e-01	ci right 6.012561e-01	k: 5916	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
UPF2   10000 perm   2 sec   (4827 perm/sec)   p_kst 1   p_cons 5.916000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/UPF2.12_3903_10000_1_0.5916_1.png
                gene_name: UPF2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
USP28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.104834e-02	ci left: 4.670686e-01	ci right 4.867449e-01	k: 4769	n:10000
Cons ci ratio: 1.006938e-01	ci left: 1.249344e-01	ci right 1.382810e-01	k: 1315	n:10000
KS ci ratio: 1.380573e-02	ci left: 8.833963e-01	ci right 8.957757e-01	k: 8897	n:10000
USP28   10000 perm   2 sec   (5073 perm/sec)   p_kst 8.897000e-01   p_cons 1.315000e-01   p_joint 4.769000e-01

Joint ci ratio: 2.875873e-02	ci left: 4.746033e-01	ci right 4.885021e-01	k: 9631	n:20000
Cons ci ratio: 7.205614e-02	ci left: 1.242359e-01	ci right 1.335722e-01	k: 2577	n:20000
KS ci ratio: 9.743510e-03	ci left: 8.856327e-01	ci right 8.943536e-01	k: 17801	n:20000
USP28   20000 perm   4 sec   (4569 perm/sec)   p_kst 8.900500e-01   p_cons 1.288500e-01   p_joint 4.815500e-01

Outputting figure to mutsig2_images.part000000000187/USP28.11_3334_20000_0.89005_0.12885_0.48155.png
                gene_name: USP28
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 12 percent done.
USP29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.818124e-02	ci left: 3.885863e-01	ci right 4.078731e-01	k: 3982	n:10000
Cons ci ratio: 7.120058e-02	ci left: 2.242494e-01	ci right 2.409066e-01	k: 2325	n:10000
KS ci ratio: 4.002586e-02	ci left: 4.796566e-01	ci right 4.993495e-01	k: 4895	n:10000
USP29   10000 perm   2 sec   (5270 perm/sec)   p_kst 4.895000e-01   p_cons 2.325000e-01   p_joint 3.982000e-01

Outputting figure to mutsig2_images.part000000000187/USP29.11_2773_10000_0.4895_0.2325_0.3982.png
                gene_name: USP29
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 14 percent done.
URB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.716947e-02	ci left: 5.166574e-01	ci right 5.363271e-01	k: 5265	n:10000
Cons ci ratio: 7.852074e-02	ci left: 1.916074e-01	ci right 2.073681e-01	k: 1994	n:10000
KS ci ratio: 2.132749e-02	ci left: 7.632436e-01	ci right 7.797979e-01	k: 7716	n:10000
URB2   10000 perm   2 sec   (4625 perm/sec)   p_kst 7.716000e-01   p_cons 1.994000e-01   p_joint 5.265000e-01

Outputting figure to mutsig2_images.part000000000187/URB2.10_4611_10000_0.7716_0.1994_0.5265.png
                gene_name: URB2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 15 percent done.
ULK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.354587e-02	ci left: 5.674464e-01	ci right 5.869086e-01	k: 5772	n:10000
Cons ci ratio: 2.730395e-02	ci left: 6.640082e-01	ci right 6.824908e-01	k: 6733	n:10000
KS ci ratio: 4.770216e-02	ci left: 3.933658e-01	ci right 4.126907e-01	k: 4030	n:10000
ULK4   10000 perm   2 sec   (4573 perm/sec)   p_kst 4.030000e-01   p_cons 6.733000e-01   p_joint 5.772000e-01

Outputting figure to mutsig2_images.part000000000187/ULK4.9_3972_10000_0.403_0.6733_0.5772.png
                gene_name: ULK4
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 17 percent done.
UNC45B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.400106e-02	ci left: 3.356792e-01	ci right 3.544111e-01	k: 3450	n:10000
KS ci ratio: 3.238453e-02	ci left: 5.845997e-01	ci right 6.039453e-01	k: 5943	n:10000
UNC45B   10000 perm   2 sec   (5238 perm/sec)   p_kst 5.943000e-01   p_cons 3.450000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/UNC45B.9_2872_10000_0.5943_0.345_1.png
                gene_name: UNC45B
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
UNC5D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.717009e-02	ci left: 1.971244e-01	ci right 2.130478e-01	k: 2050	n:10000
Cons ci ratio: 4.013009e-02	ci left: 4.783575e-01	ci right 4.980493e-01	k: 4882	n:10000
KS ci ratio: 9.312912e-02	ci left: 1.434464e-01	ci right 1.575578e-01	k: 1504	n:10000
UNC5D   10000 perm   2 sec   (4882 perm/sec)   p_kst 1.504000e-01   p_cons 4.882000e-01   p_joint 2.050000e-01

Outputting figure to mutsig2_images.part000000000187/UNC5D.9_2930_10000_0.1504_0.4882_0.205.png
                gene_name: UNC5D
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 20 percent done.
USP17L2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.726249e-02	ci left: 8.302232e-01	ci right 8.447796e-01	k: 8376	n:10000
Cons ci ratio: 2.902211e-02	ci left: 6.364352e-01	ci right 6.552797e-01	k: 6459	n:10000
KS ci ratio: 2.800798e-02	ci left: 6.526327e-01	ci right 6.712729e-01	k: 6620	n:10000
USP17L2   10000 perm   2 sec   (5347 perm/sec)   p_kst 6.620000e-01   p_cons 6.459000e-01   p_joint 8.376000e-01

Outputting figure to mutsig2_images.part000000000187/USP17L2.9_1597_10000_0.662_0.6459_0.8376.png
                gene_name: USP17L2
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 22 percent done.
USH1C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.376126e-02	ci left: 4.353266e-01	ci right 4.549054e-01	k: 4451	n:10000
Cons ci ratio: 3.311486e-02	ci left: 5.737646e-01	ci right 5.931867e-01	k: 5835	n:10000
KS ci ratio: 5.692071e-02	ci left: 3.124482e-01	ci right 3.308558e-01	k: 3216	n:10000
USH1C   10000 perm   2 sec   (4927 perm/sec)   p_kst 3.216000e-01   p_cons 5.835000e-01   p_joint 4.451000e-01

Outputting figure to mutsig2_images.part000000000187/USH1C.8_2886_10000_0.3216_0.5835_0.4451.png
                gene_name: USH1C
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.45 

Current progress: 24 percent done.
USHBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.072868e-02	ci left: 1.501165e-01	ci right 1.644837e-01	k: 1572	n:10000
Cons ci ratio: 1.051876e-02	ci left: 9.278190e-01	ci right 9.377271e-01	k: 9329	n:10000
KS ci ratio: 2.135306e-01	ci left: 2.911124e-02	ci right 3.616447e-02	k: 325	n:10000
USHBP1   10000 perm   2 sec   (5875 perm/sec)   p_kst 3.250000e-02   p_cons 9.329000e-01   p_joint 1.572000e-01

Joint ci ratio: 9.546324e-02	ci left: 7.402653e-02	ci right 8.149677e-02	k: 1554	n:20000
Cons ci ratio: 7.474386e-03	ci left: 9.286787e-01	ci right 9.356950e-01	k: 18645	n:20000
KS ci ratio: 1.603879e-01	ci left: 2.666999e-02	ci right 3.136827e-02	k: 579	n:20000
USHBP1   20000 perm   4 sec   (5249 perm/sec)   p_kst 2.895000e-02   p_cons 9.322500e-01   p_joint 7.770000e-02

Joint ci ratio: 9.506734e-02	ci left: 5.107803e-02	ci right 5.620885e-02	k: 1608	n:30000
Cons ci ratio: 6.144812e-03	ci left: 9.284470e-01	ci right 9.342024e-01	k: 27941	n:30000
KS ci ratio: 1.326147e-01	ci left: 2.642037e-02	ci right 3.020505e-02	k: 848	n:30000
USHBP1   30000 perm   6 sec   (4987 perm/sec)   p_kst 2.826667e-02   p_cons 9.313667e-01   p_joint 5.360000e-02

Joint ci ratio: 6.660198e-02	ci left: 7.703939e-02	ci right 8.237181e-02	k: 3187	n:40000
Cons ci ratio: 5.291798e-03	ci left: 9.295652e-01	ci right 9.345219e-01	k: 37283	n:40000
KS ci ratio: 1.140727e-01	ci left: 2.703697e-02	ci right 3.033192e-02	k: 1146	n:40000
USHBP1   40000 perm   8 sec   (4824 perm/sec)   p_kst 2.865000e-02   p_cons 9.320750e-01   p_joint 7.967500e-02

Joint ci ratio: 6.722146e-02	ci left: 6.153538e-02	ci right 6.583545e-02	k: 3183	n:50000
Cons ci ratio: 4.717850e-03	ci left: 9.302454e-01	ci right 9.346642e-01	k: 46624	n:50000
KS ci ratio: 1.018017e-01	ci left: 2.733197e-02	ci right 3.028307e-02	k: 1439	n:50000
USHBP1   50000 perm   11 sec   (4674 perm/sec)   p_kst 2.878000e-02   p_cons 9.324800e-01   p_joint 6.366000e-02

Joint ci ratio: 6.087935e-02	ci left: 6.266227e-02	ci right 6.661331e-02	k: 3877	n:60000
Cons ci ratio: 4.298042e-03	ci left: 9.306997e-01	ci right 9.347249e-01	k: 55964	n:60000
KS ci ratio: 9.363168e-02	ci left: 2.705279e-02	ci right 2.972642e-02	k: 1702	n:60000
USHBP1   60000 perm   13 sec   (4536 perm/sec)   p_kst 2.836667e-02   p_cons 9.327333e-01   p_joint 6.461667e-02

Outputting figure to mutsig2_images.part000000000187/USHBP1.8_2160_60000_0.028367_0.93273_0.064617.png
                gene_name: USHBP1
               theta_stop: 0.094 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.030 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.065 
     ci_joint_bounds_left: 0.063 
    ci_joint_bounds_right: 0.067 

Current progress: 25 percent done.
USP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.022342e-02	ci left: 7.816803e-01	ci right 7.977506e-01	k: 7898	n:10000
KS ci ratio: 1.941074e-02	ci left: 7.951683e-01	ci right 8.108548e-01	k: 8031	n:10000
USP11   10000 perm   2 sec   (4924 perm/sec)   p_kst 8.031000e-01   p_cons 7.898000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/USP11.8_2976_10000_0.8031_0.7898_1.png
                gene_name: USP11
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
USP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.761920e-02	ci left: 3.071901e-01	ci right 3.255170e-01	k: 3163	n:10000
Cons ci ratio: 7.385874e-03	ci left: 9.620496e-01	ci right 9.692759e-01	k: 9658	n:10000
KS ci ratio: 7.380955e-02	ci left: 2.118147e-01	ci right 2.281487e-01	k: 2199	n:10000
USP15   10000 perm   2 sec   (4905 perm/sec)   p_kst 2.199000e-01   p_cons 9.658000e-01   p_joint 3.163000e-01

Outputting figure to mutsig2_images.part000000000187/USP15.8_2943_10000_0.2199_0.9658_0.3163.png
                gene_name: USP15
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 29 percent done.
USP25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.419256e-03	ci left: 9.617346e-01	ci right 9.689910e-01	k: 9655	n:10000
Cons ci ratio: 1.858457e-02	ci left: 8.087717e-01	ci right 8.240436e-01	k: 8165	n:10000
KS ci ratio: 2.046673e-02	ci left: 7.776263e-01	ci right 7.938069e-01	k: 7858	n:10000
USP25   10000 perm   2 sec   (5065 perm/sec)   p_kst 7.858000e-01   p_cons 8.165000e-01   p_joint 9.655000e-01

Outputting figure to mutsig2_images.part000000000187/USP25.8_3264_10000_0.7858_0.8165_0.9655.png
                gene_name: USP25
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 31 percent done.
USP26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.253919e-02	ci left: 5.822919e-01	ci right 6.016545e-01	k: 5920	n:10000
Cons ci ratio: 5.624939e-02	ci left: 3.176084e-01	ci right 3.360925e-01	k: 3268	n:10000
KS ci ratio: 2.455968e-02	ci left: 7.091690e-01	ci right 7.269038e-01	k: 7181	n:10000
USP26   10000 perm   2 sec   (4710 perm/sec)   p_kst 7.181000e-01   p_cons 3.268000e-01   p_joint 5.920000e-01

Outputting figure to mutsig2_images.part000000000187/USP26.8_2746_10000_0.7181_0.3268_0.592.png
                gene_name: USP26
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 32 percent done.
UMOD
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
Cons ci ratio: 7.546088e-02	ci left: 2.044183e-01	ci right 2.205496e-01	k: 2124	n:10000
KS ci ratio: 5.830139e-01	ci left: 3.198812e-03	ci right 5.902342e-03	k: 44	n:10000
UMOD   10000 perm   2 sec   (5556 perm/sec)   p_kst 4.400000e-03   p_cons 2.124000e-01   p_joint 9.200000e-03

Joint ci ratio: 3.387667e-01	ci left: 5.525009e-03	ci right 7.821951e-03	k: 132	n:20000
Cons ci ratio: 5.247475e-02	ci left: 2.123931e-01	ci right 2.238889e-01	k: 4362	n:20000
KS ci ratio: 4.373811e-01	ci left: 3.128462e-03	ci right 4.920482e-03	k: 79	n:20000
UMOD   20000 perm   4 sec   (4992 perm/sec)   p_kst 3.950000e-03   p_cons 2.181000e-01   p_joint 6.600000e-03

Joint ci ratio: 2.263290e-01	ci left: 8.779206e-03	ci right 1.105055e-02	k: 296	n:30000
Cons ci ratio: 4.313871e-02	ci left: 2.111559e-01	ci right 2.204991e-01	k: 6474	n:30000
KS ci ratio: 3.404351e-01	ci left: 3.652208e-03	ci right 5.179552e-03	k: 131	n:30000
UMOD   30000 perm   6 sec   (4766 perm/sec)   p_kst 4.366667e-03   p_cons 2.158000e-01   p_joint 9.866667e-03

Joint ci ratio: 1.588266e-01	ci left: 1.380760e-02	ci right 1.621357e-02	k: 599	n:40000
Cons ci ratio: 3.741825e-02	ci left: 2.112554e-01	ci right 2.193359e-01	k: 8611	n:40000
KS ci ratio: 2.837070e-01	ci left: 4.076631e-03	ci right 5.446791e-03	k: 189	n:40000
UMOD   40000 perm   9 sec   (4619 perm/sec)   p_kst 4.725000e-03   p_cons 2.152750e-01   p_joint 1.497500e-02

Joint ci ratio: 1.511105e-01	ci left: 1.227572e-02	ci right 1.430138e-02	k: 663	n:50000
Cons ci ratio: 3.344418e-02	ci left: 2.119225e-01	ci right 2.191506e-01	k: 10776	n:50000
KS ci ratio: 2.556555e-01	ci left: 4.081954e-03	ci right 5.296654e-03	k: 233	n:50000
UMOD   50000 perm   11 sec   (4509 perm/sec)   p_kst 4.660000e-03   p_cons 2.155200e-01   p_joint 1.326000e-02

Joint ci ratio: 1.561062e-01	ci left: 9.587650e-03	ci right 1.122689e-02	k: 623	n:60000
Cons ci ratio: 3.044832e-02	ci left: 2.131436e-01	ci right 2.197505e-01	k: 12986	n:60000
KS ci ratio: 2.320561e-01	ci left: 4.184173e-03	ci right 5.297898e-03	k: 283	n:60000
UMOD   60000 perm   14 sec   (4408 perm/sec)   p_kst 4.716667e-03   p_cons 2.164333e-01   p_joint 1.038333e-02

Joint ci ratio: 1.296772e-01	ci left: 1.204950e-02	ci right 1.373409e-02	k: 901	n:70000
Cons ci ratio: 2.822833e-02	ci left: 2.129278e-01	ci right 2.190387e-01	k: 15118	n:70000
KS ci ratio: 2.139790e-01	ci left: 4.260893e-03	ci right 5.295101e-03	k: 333	n:70000
UMOD   70000 perm   16 sec   (4322 perm/sec)   p_kst 4.757143e-03   p_cons 2.159714e-01   p_joint 1.287143e-02

Joint ci ratio: 1.352744e-01	ci left: 9.684396e-03	ci right 1.110145e-02	k: 830	n:80000
Cons ci ratio: 2.636516e-02	ci left: 2.136376e-01	ci right 2.193579e-01	k: 17319	n:80000
KS ci ratio: 2.003477e-01	ci left: 4.285335e-03	ci right 5.251118e-03	k: 380	n:80000
UMOD   80000 perm   19 sec   (4244 perm/sec)   p_kst 4.750000e-03   p_cons 2.164875e-01   p_joint 1.037500e-02

Joint ci ratio: 1.289301e-01	ci left: 9.510794e-03	ci right 1.083218e-02	k: 914	n:90000
Cons ci ratio: 2.488830e-02	ci left: 2.133815e-01	ci right 2.187702e-01	k: 19446	n:90000
KS ci ratio: 1.877108e-01	ci left: 4.369511e-03	ci right 5.285076e-03	k: 433	n:90000
UMOD   90000 perm   22 sec   (4171 perm/sec)   p_kst 4.811111e-03   p_cons 2.160667e-01   p_joint 1.015556e-02

Joint ci ratio: 1.317866e-01	ci left: 8.191733e-03	ci right 9.357027e-03	k: 876	n:100000
Cons ci ratio: 2.360887e-02	ci left: 2.135523e-01	ci right 2.186642e-01	k: 21610	n:100000
KS ci ratio: 1.781194e-01	ci left: 4.390597e-03	ci right 5.258508e-03	k: 481	n:100000
UMOD   100000 perm   24 sec   (4099 perm/sec)   p_kst 4.810000e-03   p_cons 2.161000e-01   p_joint 8.760000e-03

Joint ci ratio: 1.262958e-01	ci left: 8.133220e-03	ci right 9.238373e-03	k: 954	n:110000
Cons ci ratio: 2.253080e-02	ci left: 2.133629e-01	ci right 2.182339e-01	k: 23737	n:110000
KS ci ratio: 1.687463e-01	ci left: 4.469774e-03	ci right 5.302115e-03	k: 536	n:110000
UMOD   110000 perm   27 sec   (4034 perm/sec)   p_kst 4.872727e-03   p_cons 2.157909e-01   p_joint 8.672727e-03

Joint ci ratio: 1.137964e-01	ci left: 9.234152e-03	ci right 1.035640e-02	k: 1174	n:120000
Cons ci ratio: 2.155621e-02	ci left: 2.137076e-01	ci right 2.183728e-01	k: 25924	n:120000
KS ci ratio: 1.608490e-01	ci left: 4.528752e-03	ci right 5.328795e-03	k: 590	n:120000
UMOD   120000 perm   30 sec   (3971 perm/sec)   p_kst 4.916667e-03   p_cons 2.160333e-01   p_joint 9.783333e-03

Joint ci ratio: 1.141342e-01	ci left: 8.478805e-03	ci right 9.512506e-03	k: 1168	n:130000
Cons ci ratio: 2.070227e-02	ci left: 2.139341e-01	ci right 2.184170e-01	k: 28102	n:130000
KS ci ratio: 1.537265e-01	ci left: 4.594218e-03	ci right 5.366578e-03	k: 646	n:130000
UMOD   130000 perm   33 sec   (3908 perm/sec)   p_kst 4.969231e-03   p_cons 2.161692e-01   p_joint 8.984615e-03

Joint ci ratio: 1.108712e-01	ci left: 8.359078e-03	ci right 9.347140e-03	k: 1238	n:140000
Cons ci ratio: 1.994743e-02	ci left: 2.140460e-01	ci right 2.183658e-01	k: 30268	n:140000
KS ci ratio: 1.481100e-01	ci left: 4.609721e-03	ci right 5.353866e-03	k: 696	n:140000
UMOD   140000 perm   36 sec   (3849 perm/sec)   p_kst 4.971429e-03   p_cons 2.162000e-01   p_joint 8.842857e-03

Joint ci ratio: 1.003689e-01	ci left: 9.561137e-03	ci right 1.057793e-02	k: 1509	n:150000
Cons ci ratio: 1.925706e-02	ci left: 2.143648e-01	ci right 2.185395e-01	k: 32467	n:150000
KS ci ratio: 1.437457e-01	ci left: 4.578602e-03	ci right 5.294074e-03	k: 739	n:150000
UMOD   150000 perm   40 sec   (3794 perm/sec)   p_kst 4.926667e-03   p_cons 2.164467e-01   p_joint 1.006000e-02

Joint ci ratio: 9.490639e-02	ci left: 1.004903e-02	ci right 1.105632e-02	k: 1687	n:160000
Cons ci ratio: 1.907093e-02	ci left: 2.069040e-01	ci right 2.108940e-01	k: 33423	n:160000
KS ci ratio: 1.372151e-01	ci left: 4.726654e-03	ci right 5.428965e-03	k: 811	n:160000
UMOD   160000 perm   43 sec   (3740 perm/sec)   p_kst 5.068750e-03   p_cons 2.088937e-01   p_joint 1.054375e-02

Joint ci ratio: 9.245119e-02	ci left: 9.980649e-03	ci right 1.095380e-02	k: 1778	n:170000
Cons ci ratio: 1.849626e-02	ci left: 2.070575e-01	ci right 2.109289e-01	k: 35528	n:170000
KS ci ratio: 1.317251e-01	ci left: 4.840865e-03	ci right 5.529117e-03	k: 880	n:170000
UMOD   170000 perm   46 sec   (3689 perm/sec)   p_kst 5.176471e-03   p_cons 2.089882e-01   p_joint 1.045882e-02

Joint ci ratio: 9.862603e-02	ci left: 8.270713e-03	ci right 9.134111e-03	k: 1565	n:180000
Cons ci ratio: 1.679866e-02	ci left: 2.303008e-01	ci right 2.342078e-01	k: 41805	n:180000
KS ci ratio: 1.274535e-01	ci left: 4.894465e-03	ci right 5.566066e-03	k: 940	n:180000
UMOD   180000 perm   49 sec   (3637 perm/sec)   p_kst 5.222222e-03   p_cons 2.322500e-01   p_joint 8.694444e-03

Joint ci ratio: 9.643792e-02	ci left: 8.205103e-03	ci right 9.041572e-03	k: 1637	n:190000
Cons ci ratio: 1.635775e-02	ci left: 2.301979e-01	ci right 2.339997e-01	k: 44098	n:190000
KS ci ratio: 1.243236e-01	ci left: 4.881536e-03	ci right 5.533701e-03	k: 988	n:190000
UMOD   190000 perm   53 sec   (3587 perm/sec)   p_kst 5.200000e-03   p_cons 2.320947e-01   p_joint 8.615789e-03

Joint ci ratio: 9.578318e-02	ci left: 7.907025e-03	ci right 8.707325e-03	k: 1660	n:200000
Cons ci ratio: 1.594289e-02	ci left: 2.302611e-01	ci right 2.339666e-01	k: 46422	n:200000
KS ci ratio: 1.214723e-01	ci left: 4.865232e-03	ci right 5.499240e-03	k: 1035	n:200000
UMOD   200000 perm   57 sec   (3538 perm/sec)   p_kst 5.175000e-03   p_cons 2.321100e-01   p_joint 8.300000e-03

Joint ci ratio: 9.358445e-02	ci left: 7.897780e-03	ci right 8.677789e-03	k: 1739	n:210000
Cons ci ratio: 1.556307e-02	ci left: 2.302055e-01	ci right 2.338210e-01	k: 48722	n:210000
KS ci ratio: 1.186985e-01	ci left: 4.859878e-03	ci right 5.477711e-03	k: 1084	n:210000
UMOD   210000 perm   60 sec   (3491 perm/sec)   p_kst 5.161905e-03   p_cons 2.320095e-01   p_joint 8.280952e-03

Joint ci ratio: 8.398863e-02	ci left: 9.392562e-03	ci right 1.022043e-02	k: 2156	n:220000
Cons ci ratio: 1.520121e-02	ci left: 2.303417e-01	ci right 2.338745e-01	k: 51063	n:220000
KS ci ratio: 1.157989e-01	ci left: 4.881646e-03	ci right 5.486050e-03	k: 1139	n:220000
UMOD   220000 perm   64 sec   (3444 perm/sec)   p_kst 5.177273e-03   p_cons 2.321045e-01   p_joint 9.800000e-03

Joint ci ratio: 8.545838e-02	ci left: 8.677641e-03	ci right 9.456546e-03	k: 2084	n:230000
Cons ci ratio: 1.487108e-02	ci left: 2.302848e-01	ci right 2.337393e-01	k: 53362	n:230000
KS ci ratio: 1.131019e-01	ci left: 4.901688e-03	ci right 5.493496e-03	k: 1194	n:230000
UMOD   230000 perm   68 sec   (3401 perm/sec)   p_kst 5.191304e-03   p_cons 2.320087e-01   p_joint 9.060870e-03

Joint ci ratio: 8.347827e-02	ci left: 8.723946e-03	ci right 9.487980e-03	k: 2184	n:240000
Cons ci ratio: 1.455527e-02	ci left: 2.303872e-01	ci right 2.337693e-01	k: 55698	n:240000
KS ci ratio: 1.108976e-01	ci left: 4.891847e-03	ci right 5.470202e-03	k: 1242	n:240000
UMOD   240000 perm   71 sec   (3360 perm/sec)   p_kst 5.175000e-03   p_cons 2.320750e-01   p_joint 9.100000e-03

Joint ci ratio: 8.453408e-02	ci left: 8.167343e-03	ci right 8.892120e-03	k: 2131	n:250000
Cons ci ratio: 1.425492e-02	ci left: 2.305779e-01	ci right 2.338923e-01	k: 58058	n:250000
KS ci ratio: 1.087326e-01	ci left: 4.890679e-03	ci right 5.456886e-03	k: 1292	n:250000
UMOD   250000 perm   75 sec   (3316 perm/sec)   p_kst 5.168000e-03   p_cons 2.322320e-01   p_joint 8.524000e-03

Joint ci ratio: 8.488998e-02	ci left: 7.789151e-03	ci right 8.483419e-03	k: 2114	n:260000
Cons ci ratio: 1.396340e-02	ci left: 2.309848e-01	ci right 2.342366e-01	k: 60478	n:260000
KS ci ratio: 1.066897e-01	ci left: 4.889703e-03	ci right 5.444493e-03	k: 1342	n:260000
UMOD   260000 perm   79 sec   (3277 perm/sec)   p_kst 5.161538e-03   p_cons 2.326077e-01   p_joint 8.130769e-03

Joint ci ratio: 7.594791e-02	ci left: 9.399140e-03	ci right 1.014477e-02	k: 2637	n:270000
Cons ci ratio: 1.371064e-02	ci left: 2.308005e-01	ci right 2.339904e-01	k: 62746	n:270000
KS ci ratio: 1.040469e-01	ci left: 4.957433e-03	ci right 5.505122e-03	k: 1411	n:270000
UMOD   270000 perm   83 sec   (3242 perm/sec)   p_kst 5.225926e-03   p_cons 2.323926e-01   p_joint 9.766667e-03

Joint ci ratio: 7.699935e-02	ci left: 8.818136e-03	ci right 9.527794e-03	k: 2567	n:280000
Cons ci ratio: 1.346115e-02	ci left: 2.308936e-01	ci right 2.340263e-01	k: 65088	n:280000
KS ci ratio: 1.021124e-01	ci left: 4.968268e-03	ci right 5.506336e-03	k: 1465	n:280000
UMOD   280000 perm   87 sec   (3209 perm/sec)   p_kst 5.232143e-03   p_cons 2.324571e-01   p_joint 9.167857e-03

Joint ci ratio: 7.266841e-02	ci left: 9.573321e-03	ci right 1.029859e-02	k: 2880	n:290000
Cons ci ratio: 1.322864e-02	ci left: 2.308775e-01	ci right 2.339554e-01	k: 67400	n:290000
KS ci ratio: 1.005148e-01	ci left: 4.954909e-03	ci right 5.482639e-03	k: 1512	n:290000
UMOD   290000 perm   91 sec   (3172 perm/sec)   p_kst 5.213793e-03   p_cons 2.324138e-01   p_joint 9.931034e-03

Joint ci ratio: 7.451741e-02	ci left: 8.799271e-03	ci right 9.483595e-03	k: 2741	n:300000
Cons ci ratio: 1.300911e-02	ci left: 2.308264e-01	ci right 2.338521e-01	k: 69701	n:300000
KS ci ratio: 9.864093e-02	ci left: 4.978267e-03	ci right 5.498028e-03	k: 1570	n:300000
UMOD   300000 perm   96 sec   (3139 perm/sec)   p_kst 5.233333e-03   p_cons 2.323367e-01   p_joint 9.136667e-03

Outputting figure to mutsig2_images.part000000000187/UMOD.7_1963_300000_0.0052333_0.23234_0.0091367.png
                gene_name: UMOD
               theta_stop: 0.099 
                    nperm: 300000 
                     p_ks: 0.0052 
        ci_ks_bounds_left: 0.0050 
       ci_ks_bounds_right: 0.0055 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.0091 
     ci_joint_bounds_left: 0.0088 
    ci_joint_bounds_right: 0.0095 

Current progress: 34 percent done.
USP13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.148471e-02	ci left: 7.606116e-01	ci right 7.772314e-01	k: 7690	n:10000
Cons ci ratio: 4.008997e-02	ci left: 4.788572e-01	ci right 4.985494e-01	k: 4887	n:10000
KS ci ratio: 3.411267e-02	ci left: 5.592250e-01	ci right 5.787348e-01	k: 5690	n:10000
USP13   10000 perm   2 sec   (5308 perm/sec)   p_kst 5.690000e-01   p_cons 4.887000e-01   p_joint 7.690000e-01

Outputting figure to mutsig2_images.part000000000187/USP13.7_2676_10000_0.569_0.4887_0.769.png
                gene_name: USP13
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 36 percent done.
USP19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.787134e-01	ci left: 4.178548e-02	ci right 5.008162e-02	k: 458	n:10000
Cons ci ratio: 2.958900e-02	ci left: 6.274864e-01	ci right 6.464337e-01	k: 6370	n:10000
KS ci ratio: 3.155130e-01	ci left: 1.280183e-02	ci right 1.768651e-02	k: 151	n:10000
USP19   10000 perm   2 sec   (4893 perm/sec)   p_kst 1.510000e-02   p_cons 6.370000e-01   p_joint 4.580000e-02

Joint ci ratio: 1.284389e-01	ci left: 4.163516e-02	ci right 4.739821e-02	k: 889	n:20000
Cons ci ratio: 2.073391e-02	ci left: 6.345074e-01	ci right 6.478515e-01	k: 12824	n:20000
KS ci ratio: 2.305348e-01	ci left: 1.260619e-02	ci right 1.593723e-02	k: 284	n:20000
USP19   20000 perm   5 sec   (4438 perm/sec)   p_kst 1.420000e-02   p_cons 6.412000e-01   p_joint 4.445000e-02

Joint ci ratio: 1.163333e-01	ci left: 3.434145e-02	ci right 3.861558e-02	k: 1093	n:30000
Cons ci ratio: 1.687917e-02	ci left: 6.371133e-01	ci right 6.479924e-01	k: 19277	n:30000
KS ci ratio: 1.815619e-01	ci left: 1.390964e-02	ci right 1.671870e-02	k: 458	n:30000
USP19   30000 perm   7 sec   (4260 perm/sec)   p_kst 1.526667e-02   p_cons 6.425667e-01   p_joint 3.643333e-02

Joint ci ratio: 8.579532e-02	ci left: 4.746806e-02	ci right 5.174763e-02	k: 1983	n:40000
Cons ci ratio: 1.457152e-02	ci left: 6.393099e-01	ci right 6.487191e-01	k: 25761	n:40000
KS ci ratio: 1.576307e-01	ci left: 1.402381e-02	ci right 1.644731e-02	k: 608	n:40000
USP19   40000 perm   10 sec   (4148 perm/sec)   p_kst 1.520000e-02   p_cons 6.440250e-01   p_joint 4.957500e-02

Joint ci ratio: 8.433469e-02	ci left: 3.967052e-02	ci right 4.318298e-02	k: 2070	n:50000
Cons ci ratio: 1.301120e-02	ci left: 6.405869e-01	ci right 6.489963e-01	k: 32240	n:50000
KS ci ratio: 1.405449e-01	ci left: 1.424234e-02	ci right 1.641446e-02	k: 765	n:50000
USP19   50000 perm   12 sec   (4057 perm/sec)   p_kst 1.530000e-02   p_cons 6.448000e-01   p_joint 4.140000e-02

Joint ci ratio: 7.833143e-02	ci left: 3.849504e-02	ci right 4.164965e-02	k: 2403	n:60000
Cons ci ratio: 1.189271e-02	ci left: 6.403707e-01	ci right 6.480487e-01	k: 38653	n:60000
KS ci ratio: 1.285269e-01	ci left: 1.428461e-02	ci right 1.626268e-02	k: 915	n:60000
USP19   60000 perm   15 sec   (3984 perm/sec)   p_kst 1.525000e-02   p_cons 6.442167e-01   p_joint 4.005000e-02

Joint ci ratio: 7.454696e-02	ci left: 3.658163e-02	ci right 3.942826e-02	k: 2659	n:70000
Cons ci ratio: 1.101128e-02	ci left: 6.406260e-01	ci right 6.477335e-01	k: 45093	n:70000
KS ci ratio: 1.192577e-01	ci left: 1.429278e-02	ci right 1.611916e-02	k: 1063	n:70000
USP19   70000 perm   18 sec   (3916 perm/sec)   p_kst 1.518571e-02   p_cons 6.441857e-01   p_joint 3.798571e-02

Joint ci ratio: 7.675379e-02	ci left: 3.036176e-02	ci right 3.279737e-02	k: 2525	n:80000
Cons ci ratio: 1.047457e-02	ci left: 6.331056e-01	ci right 6.397845e-01	k: 50916	n:80000
KS ci ratio: 1.109547e-01	ci left: 1.450944e-02	ci right 1.622597e-02	k: 1228	n:80000
USP19   80000 perm   21 sec   (3855 perm/sec)   p_kst 1.535000e-02   p_cons 6.364500e-01   p_joint 3.156250e-02

Joint ci ratio: 6.548601e-02	ci left: 3.703362e-02	ci right 3.955181e-02	k: 3445	n:90000
Cons ci ratio: 1.005805e-02	ci left: 6.247658e-01	ci right 6.310926e-01	k: 56514	n:90000
KS ci ratio: 1.045948e-01	ci left: 1.456231e-02	ci right 1.618026e-02	k: 1382	n:90000
USP19   90000 perm   24 sec   (3799 perm/sec)   p_kst 1.535556e-02   p_cons 6.279333e-01   p_joint 3.827778e-02

Joint ci ratio: 6.309912e-02	ci left: 3.598623e-02	ci right 3.834072e-02	k: 3715	n:100000
Cons ci ratio: 9.555874e-03	ci left: 6.242444e-01	ci right 6.302482e-01	k: 62725	n:100000
KS ci ratio: 9.971173e-02	ci left: 1.446053e-02	ci right 1.598777e-02	k: 1521	n:100000
USP19   100000 perm   27 sec   (3739 perm/sec)   p_kst 1.521000e-02   p_cons 6.272500e-01   p_joint 3.715000e-02

Outputting figure to mutsig2_images.part000000000187/USP19.7_4057_100000_0.01521_0.62725_0.03715.png
                gene_name: USP19
               theta_stop: 0.100 
                    nperm: 100000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.038 

Current progress: 37 percent done.
USP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.252227e-01	ci left: 2.608227e-02	ci right 3.279558e-02	k: 293	n:10000
Cons ci ratio: 2.228902e-01	ci left: 2.664945e-02	ci right 3.342800e-02	k: 299	n:10000
KS ci ratio: 1.660239e-01	ci left: 4.840157e-02	ci right 5.726121e-02	k: 527	n:10000
USP3   10000 perm   2 sec   (5655 perm/sec)   p_kst 5.270000e-02   p_cons 2.990000e-02   p_joint 2.930000e-02

Joint ci ratio: 1.525718e-01	ci left: 2.950774e-02	ci right 3.442957e-02	k: 638	n:20000
Cons ci ratio: 1.581552e-01	ci left: 2.743895e-02	ci right 3.219905e-02	k: 595	n:20000
KS ci ratio: 1.146732e-01	ci left: 5.202621e-02	ci right 5.840388e-02	k: 1103	n:20000
USP3   20000 perm   4 sec   (5072 perm/sec)   p_kst 5.515000e-02   p_cons 2.975000e-02   p_joint 3.190000e-02

Joint ci ratio: 1.772951e-01	ci left: 1.461049e-02	ci right 1.748434e-02	k: 480	n:30000
Cons ci ratio: 1.403785e-01	ci left: 2.355244e-02	ci right 2.714029e-02	k: 759	n:30000
KS ci ratio: 9.423476e-02	ci left: 5.195785e-02	ci right 5.712884e-02	k: 1635	n:30000
USP3   30000 perm   6 sec   (4838 perm/sec)   p_kst 5.450000e-02   p_cons 2.530000e-02   p_joint 1.600000e-02

Joint ci ratio: 1.701186e-01	ci left: 1.198474e-02	ci right 1.423677e-02	k: 523	n:40000
Cons ci ratio: 1.203786e-01	ci left: 2.426835e-02	ci right 2.740100e-02	k: 1032	n:40000
KS ci ratio: 8.171571e-02	ci left: 5.217274e-02	ci right 5.664222e-02	k: 2175	n:40000
USP3   40000 perm   9 sec   (4698 perm/sec)   p_kst 5.437500e-02   p_cons 2.580000e-02   p_joint 1.307500e-02

Joint ci ratio: 1.158120e-01	ci left: 2.110127e-02	ci right 2.371459e-02	k: 1119	n:50000
Cons ci ratio: 1.090321e-01	ci left: 2.382436e-02	ci right 2.659114e-02	k: 1259	n:50000
KS ci ratio: 7.360545e-02	ci left: 5.170075e-02	ci right 5.567127e-02	k: 2683	n:50000
USP3   50000 perm   11 sec   (4606 perm/sec)   p_kst 5.366000e-02   p_cons 2.518000e-02   p_joint 2.238000e-02

Joint ci ratio: 1.018360e-01	ci left: 2.287136e-02	ci right 2.534163e-02	k: 1445	n:60000
Cons ci ratio: 9.987173e-02	ci left: 2.378171e-02	ci right 2.629786e-02	k: 1501	n:60000
KS ci ratio: 6.722326e-02	ci left: 5.182754e-02	ci right 5.544912e-02	k: 3217	n:60000
USP3   60000 perm   13 sec   (4524 perm/sec)   p_kst 5.361667e-02   p_cons 2.501667e-02   p_joint 2.408333e-02

Joint ci ratio: 9.580587e-02	ci left: 2.223698e-02	ci right 2.448849e-02	k: 1634	n:70000
Cons ci ratio: 9.241829e-02	ci left: 2.389790e-02	ci right 2.622741e-02	k: 1753	n:70000
KS ci ratio: 6.244201e-02	ci left: 5.163327e-02	ci right 5.497531e-02	k: 3730	n:70000
USP3   70000 perm   16 sec   (4441 perm/sec)   p_kst 5.328571e-02   p_cons 2.504286e-02   p_joint 2.334286e-02

Outputting figure to mutsig2_images.part000000000187/USP3.7_1623_70000_0.053286_0.025043_0.023343.png
                gene_name: USP3
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.052 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.025 
      ci_cons_bounds_left: 0.024 
     ci_cons_bounds_right: 0.026 
                  p_joint: 0.023 
     ci_joint_bounds_left: 0.022 
    ci_joint_bounds_right: 0.024 

Current progress: 39 percent done.
UNC5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.333780e-02	ci left: 7.295662e-01	ci right 7.468948e-01	k: 7383	n:10000
Cons ci ratio: 1.261589e-02	ci left: 9.003168e-01	ci right 9.118454e-01	k: 9062	n:10000
KS ci ratio: 4.055801e-02	ci left: 4.730621e-01	ci right 4.927479e-01	k: 4829	n:10000
UNC5B   10000 perm   2 sec   (5509 perm/sec)   p_kst 4.829000e-01   p_cons 9.062000e-01   p_joint 7.383000e-01

Outputting figure to mutsig2_images.part000000000187/UNC5B.6_2906_10000_0.4829_0.9062_0.7383.png
                gene_name: UNC5B
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 41 percent done.
UMODL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.538307e-02	ci left: 4.174770e-01	ci right 4.369654e-01	k: 4272	n:10000
Cons ci ratio: 6.358403e-02	ci left: 2.665620e-01	ci right 2.841691e-01	k: 2753	n:10000
KS ci ratio: 4.066371e-02	ci left: 4.717634e-01	ci right 4.914473e-01	k: 4816	n:10000
UMODL1   10000 perm   2 sec   (4777 perm/sec)   p_kst 4.816000e-01   p_cons 2.753000e-01   p_joint 4.272000e-01

Outputting figure to mutsig2_images.part000000000187/UMODL1.5_4425_10000_0.4816_0.2753_0.4272.png
                gene_name: UMODL1
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 42 percent done.
UPB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.123146e-02	ci left: 2.817130e-01	ci right 2.996091e-01	k: 2906	n:10000
Cons ci ratio: 7.385874e-03	ci left: 9.620496e-01	ci right 9.692759e-01	k: 9658	n:10000
KS ci ratio: 7.989902e-02	ci left: 1.861912e-01	ci right 2.017874e-01	k: 1939	n:10000
UPB1   10000 perm   2 sec   (5661 perm/sec)   p_kst 1.939000e-01   p_cons 9.658000e-01   p_joint 2.906000e-01

Outputting figure to mutsig2_images.part000000000187/UPB1.5_1195_10000_0.1939_0.9658_0.2906.png
                gene_name: UPB1
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 44 percent done.
USP10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.304220e-02	ci left: 4.435078e-01	ci right 4.631194e-01	k: 4533	n:10000
Cons ci ratio: 7.698126e-02	ci left: 1.979127e-01	ci right 2.138590e-01	k: 2058	n:10000
KS ci ratio: 3.443362e-02	ci left: 5.546142e-01	ci right 5.741482e-01	k: 5644	n:10000
USP10   10000 perm   2 sec   (5157 perm/sec)   p_kst 5.644000e-01   p_cons 2.058000e-01   p_joint 4.533000e-01

Outputting figure to mutsig2_images.part000000000187/USP10.5_2453_10000_0.5644_0.2058_0.4533.png
                gene_name: USP10
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 46 percent done.
USP16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.635299e-02	ci left: 8.446839e-01	ci right 8.587105e-01	k: 8518	n:10000
KS ci ratio: 1.499456e-02	ci left: 8.657021e-01	ci right 8.788802e-01	k: 8724	n:10000
USP16   10000 perm   2 sec   (5251 perm/sec)   p_kst 8.724000e-01   p_cons 8.518000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/USP16.5_2540_10000_0.8724_0.8518_1.png
                gene_name: USP16
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
USP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.226108e-03	ci left: 9.537785e-01	ci right 9.617521e-01	k: 9579	n:10000
KS ci ratio: 1.436189e-02	ci left: 8.752086e-01	ci right 8.879681e-01	k: 8817	n:10000
USP2   10000 perm   2 sec   (5641 perm/sec)   p_kst 8.817000e-01   p_cons 9.579000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/USP2.5_2017_10000_0.8817_0.9579_1.png
                gene_name: USP2
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
USP24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.245979e-02	ci left: 2.181294e-01	ci right 2.346303e-01	k: 2263	n:10000
Cons ci ratio: 1.710413e-01	ci left: 4.561810e-02	ci right 5.424649e-02	k: 498	n:10000
KS ci ratio: 3.620425e-02	ci left: 5.297706e-01	ci right 5.494063e-01	k: 5396	n:10000
USP24   10000 perm   3 sec   (3861 perm/sec)   p_kst 5.396000e-01   p_cons 4.980000e-02   p_joint 2.263000e-01

Joint ci ratio: 5.613020e-02	ci left: 1.905179e-01	ci right 2.015706e-01	k: 3920	n:20000
Cons ci ratio: 1.230376e-01	ci left: 4.532094e-02	ci right 5.131125e-02	k: 965	n:20000
KS ci ratio: 2.576472e-02	ci left: 5.295090e-01	ci right 5.433804e-01	k: 10729	n:20000
USP24   20000 perm   6 sec   (3585 perm/sec)   p_kst 5.364500e-01   p_cons 4.825000e-02   p_joint 1.960000e-01

Joint ci ratio: 5.348372e-02	ci left: 1.477897e-01	ci right 1.559445e-01	k: 4555	n:30000
Cons ci ratio: 1.068111e-01	ci left: 4.066722e-02	ci right 4.528848e-02	k: 1288	n:30000
KS ci ratio: 2.091983e-02	ci left: 5.335726e-01	ci right 5.448865e-01	k: 16177	n:30000
USP24   30000 perm   9 sec   (3475 perm/sec)   p_kst 5.392333e-01   p_cons 4.293333e-02   p_joint 1.518333e-01

Joint ci ratio: 4.528004e-02	ci left: 1.542151e-01	ci right 1.613846e-01	k: 6311	n:40000
Cons ci ratio: 9.328885e-02	ci left: 4.029947e-02	ci right 4.426733e-02	k: 1690	n:40000
KS ci ratio: 1.805663e-02	ci left: 5.360012e-01	ci right 5.457929e-01	k: 21636	n:40000
USP24   40000 perm   12 sec   (3398 perm/sec)   p_kst 5.409000e-01   p_cons 4.225000e-02   p_joint 1.577750e-01

Outputting figure to mutsig2_images.part000000000187/USP24.5_8135_40000_0.5409_0.04225_0.15777.png
                gene_name: USP24
               theta_stop: 0.093 
                    nperm: 40000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.042 
      ci_cons_bounds_left: 0.040 
     ci_cons_bounds_right: 0.044 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 51 percent done.
UIMC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.631476e-02	ci left: 1.352137e-01	ci right 1.489955e-01	k: 1420	n:10000
Cons ci ratio: 5.018909e-02	ci left: 3.692789e-01	ci right 3.883917e-01	k: 3788	n:10000
KS ci ratio: 1.037097e-01	ci left: 1.184802e-01	ci right 1.315391e-01	k: 1249	n:10000
UIMC1   10000 perm   2 sec   (5934 perm/sec)   p_kst 1.249000e-01   p_cons 3.788000e-01   p_joint 1.420000e-01

Joint ci ratio: 6.611205e-02	ci left: 1.445350e-01	ci right 1.544671e-01	k: 2989	n:20000
Cons ci ratio: 3.529736e-02	ci left: 3.746609e-01	ci right 3.881736e-01	k: 7628	n:20000
KS ci ratio: 7.199204e-02	ci left: 1.244328e-01	ci right 1.337753e-01	k: 2581	n:20000
UIMC1   20000 perm   4 sec   (5274 perm/sec)   p_kst 1.290500e-01   p_cons 3.814000e-01   p_joint 1.494500e-01

Outputting figure to mutsig2_images.part000000000187/UIMC1.4_2216_20000_0.12905_0.3814_0.14945.png
                gene_name: UIMC1
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 53 percent done.
ULK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.785097e-01	ci left: 4.188120e-02	ci right 5.018585e-02	k: 459	n:10000
Cons ci ratio: 3.073991e-01	ci left: 1.354008e-02	ci right 1.854760e-02	k: 159	n:10000
KS ci ratio: 6.124631e-02	ci left: 2.816139e-01	ci right 2.995082e-01	k: 2905	n:10000
ULK2   10000 perm   2 sec   (5279 perm/sec)   p_kst 2.905000e-01   p_cons 1.590000e-02   p_joint 4.590000e-02

Joint ci ratio: 1.293542e-01	ci left: 4.105370e-02	ci right 4.677985e-02	k: 877	n:20000
Cons ci ratio: 1.940254e-01	ci left: 1.805714e-02	ci right 2.198415e-02	k: 399	n:20000
KS ci ratio: 4.432194e-02	ci left: 2.748770e-01	ci right 2.873867e-01	k: 5622	n:20000
ULK2   20000 perm   4 sec   (4751 perm/sec)   p_kst 2.811000e-01   p_cons 1.995000e-02   p_joint 4.385000e-02

Joint ci ratio: 9.432627e-02	ci left: 5.186009e-02	ci right 5.702663e-02	k: 1632	n:30000
Cons ci ratio: 1.736614e-01	ci left: 1.524830e-02	ci right 1.817970e-02	k: 500	n:30000
KS ci ratio: 3.652746e-02	ci left: 2.723057e-01	ci right 2.824708e-01	k: 8321	n:30000
ULK2   30000 perm   7 sec   (4571 perm/sec)   p_kst 2.773667e-01   p_cons 1.666667e-02   p_joint 5.440000e-02

Joint ci ratio: 9.473108e-02	ci left: 3.910211e-02	ci right 4.301488e-02	k: 1641	n:40000
Cons ci ratio: 1.489287e-01	ci left: 1.575582e-02	ci right 1.831498e-02	k: 680	n:40000
KS ci ratio: 3.161797e-02	ci left: 2.731904e-01	ci right 2.819919e-01	k: 11103	n:40000
ULK2   40000 perm   9 sec   (4440 perm/sec)   p_kst 2.775750e-01   p_cons 1.700000e-02   p_joint 4.102500e-02

Joint ci ratio: 8.526230e-02	ci left: 3.882802e-02	ci right 4.230557e-02	k: 2027	n:50000
Cons ci ratio: 1.339485e-01	ci left: 1.571094e-02	ci right 1.798565e-02	k: 841	n:50000
KS ci ratio: 2.832235e-02	ci left: 2.730605e-01	ci right 2.809254e-01	k: 13849	n:50000
ULK2   50000 perm   12 sec   (4319 perm/sec)   p_kst 2.769800e-01   p_cons 1.682000e-02   p_joint 4.054000e-02

Joint ci ratio: 8.556226e-02	ci left: 3.235194e-02	ci right 3.526004e-02	k: 2027	n:60000
Cons ci ratio: 1.212086e-01	ci left: 1.609389e-02	ci right 1.818652e-02	k: 1027	n:60000
KS ci ratio: 2.599198e-02	ci left: 2.712970e-01	ci right 2.784581e-01	k: 16492	n:60000
ULK2   60000 perm   14 sec   (4229 perm/sec)   p_kst 2.748667e-01   p_cons 1.711667e-02   p_joint 3.378333e-02

Joint ci ratio: 7.492844e-02	ci left: 3.621689e-02	ci right 3.905018e-02	k: 2633	n:70000
Cons ci ratio: 1.122810e-01	ci left: 1.615251e-02	ci right 1.808781e-02	k: 1197	n:70000
KS ci ratio: 2.410003e-02	ci left: 2.709687e-01	ci right 2.775929e-01	k: 19199	n:70000
ULK2   70000 perm   17 sec   (4140 perm/sec)   p_kst 2.742714e-01   p_cons 1.710000e-02   p_joint 3.761429e-02

Joint ci ratio: 8.600104e-02	ci left: 2.422282e-02	ci right 2.641179e-02	k: 2024	n:80000
Cons ci ratio: 1.056649e-01	ci left: 1.601811e-02	ci right 1.781717e-02	k: 1352	n:80000
KS ci ratio: 2.259236e-02	ci left: 2.703259e-01	ci right 2.765155e-01	k: 21873	n:80000
ULK2   80000 perm   20 sec   (4064 perm/sec)   p_kst 2.734125e-01   p_cons 1.690000e-02   p_joint 2.530000e-02

Joint ci ratio: 6.366381e-02	ci left: 3.913386e-02	ci right 4.171809e-02	k: 3637	n:90000
Cons ci ratio: 9.886884e-02	ci left: 1.631725e-02	ci right 1.802519e-02	k: 1544	n:90000
KS ci ratio: 2.133981e-02	ci left: 2.697701e-01	ci right 2.756001e-01	k: 24541	n:90000
ULK2   90000 perm   23 sec   (3991 perm/sec)   p_kst 2.726778e-01   p_cons 1.715556e-02   p_joint 4.041111e-02

Outputting figure to mutsig2_images.part000000000187/ULK2.4_3219_90000_0.27268_0.017156_0.040411.png
                gene_name: ULK2
               theta_stop: 0.099 
                    nperm: 90000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.017 
      ci_cons_bounds_left: 0.016 
     ci_cons_bounds_right: 0.018 
                  p_joint: 0.040 
     ci_joint_bounds_left: 0.039 
    ci_joint_bounds_right: 0.042 

Current progress: 54 percent done.
UNC13D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.827121e-02	ci left: 6.484061e-01	ci right 6.671019e-01	k: 6578	n:10000
KS ci ratio: 3.098618e-02	ci left: 6.057823e-01	ci right 6.249505e-01	k: 6154	n:10000
UNC13D   10000 perm   2 sec   (5172 perm/sec)   p_kst 6.154000e-01   p_cons 6.578000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/UNC13D.4_3401_10000_0.6154_0.6578_1.png
                gene_name: UNC13D
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
UNC45A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.484002e-01	ci left: 1.032396e-02	ci right 1.476677e-02	k: 124	n:10000
Cons ci ratio: 1.844739e-01	ci left: 3.920326e-02	ci right 4.726556e-02	k: 431	n:10000
KS ci ratio: 1.501555e-01	ci left: 5.899102e-02	ci right 6.866498e-02	k: 637	n:10000
UNC45A   10000 perm   2 sec   (5275 perm/sec)   p_kst 6.370000e-02   p_cons 4.310000e-02   p_joint 1.240000e-02

Joint ci ratio: 1.615388e-01	ci left: 2.628568e-02	ci right 3.095271e-02	k: 571	n:20000
Cons ci ratio: 1.245349e-01	ci left: 4.425346e-02	ci right 5.017908e-02	k: 943	n:20000
KS ci ratio: 1.088451e-01	ci left: 5.757595e-02	ci right 6.425241e-02	k: 1217	n:20000
UNC45A   20000 perm   4 sec   (4683 perm/sec)   p_kst 6.085000e-02   p_cons 4.715000e-02   p_joint 2.855000e-02

Joint ci ratio: 1.275976e-01	ci left: 2.855075e-02	ci right 3.247421e-02	k: 914	n:30000
Cons ci ratio: 1.025604e-01	ci left: 4.404707e-02	ci right 4.884126e-02	k: 1392	n:30000
KS ci ratio: 8.874306e-02	ci left: 5.835035e-02	ci right 6.380170e-02	k: 1831	n:30000
UNC45A   30000 perm   7 sec   (4585 perm/sec)   p_kst 6.103333e-02   p_cons 4.640000e-02   p_joint 3.046667e-02

Joint ci ratio: 9.168694e-02	ci left: 4.169289e-02	ci right 4.572369e-02	k: 1747	n:40000
Cons ci ratio: 9.732521e-02	ci left: 3.707501e-02	ci right 4.089229e-02	k: 1558	n:40000
KS ci ratio: 7.778527e-02	ci left: 5.737311e-02	ci right 6.204106e-02	k: 2387	n:40000
UNC45A   40000 perm   9 sec   (4508 perm/sec)   p_kst 5.967500e-02   p_cons 3.895000e-02   p_joint 4.367500e-02

Outputting figure to mutsig2_images.part000000000187/UNC45A.4_2915_40000_0.059675_0.03895_0.043675.png
                gene_name: UNC45A
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.039 
      ci_cons_bounds_left: 0.037 
     ci_cons_bounds_right: 0.041 
                  p_joint: 0.044 
     ci_joint_bounds_left: 0.042 
    ci_joint_bounds_right: 0.046 

Current progress: 58 percent done.
UNC93A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.338029e-02	ci left: 8.895437e-01	ci right 9.016248e-01	k: 8957	n:10000
Cons ci ratio: 1.761639e-02	ci left: 8.245259e-01	ci right 8.392802e-01	k: 8320	n:10000
KS ci ratio: 2.907287e-02	ci left: 6.356307e-01	ci right 6.544847e-01	k: 6451	n:10000
UNC93A   10000 perm   2 sec   (6291 perm/sec)   p_kst 6.451000e-01   p_cons 8.320000e-01   p_joint 8.957000e-01

Outputting figure to mutsig2_images.part000000000187/UNC93A.4_1406_10000_0.6451_0.832_0.8957.png
                gene_name: UNC93A
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 59 percent done.
UNK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.696667e-02	ci left: 2.465785e-01	ci right 2.637644e-01	k: 2551	n:10000
Cons ci ratio: 2.748407e-02	ci left: 6.610882e-01	ci right 6.796124e-01	k: 6704	n:10000
KS ci ratio: 1.031915e-01	ci left: 1.195555e-01	ci right 1.326632e-01	k: 1260	n:10000
UNK   10000 perm   2 sec   (5278 perm/sec)   p_kst 1.260000e-01   p_cons 6.704000e-01   p_joint 2.551000e-01

Joint ci ratio: 4.935896e-02	ci left: 2.337967e-01	ci right 2.456790e-01	k: 4794	n:20000
Cons ci ratio: 1.923075e-02	ci left: 6.685089e-01	ci right 6.815401e-01	k: 13501	n:20000
KS ci ratio: 7.205614e-02	ci left: 1.242359e-01	ci right 1.335722e-01	k: 2577	n:20000
UNK   20000 perm   4 sec   (4752 perm/sec)   p_kst 1.288500e-01   p_cons 6.750500e-01   p_joint 2.397000e-01

Outputting figure to mutsig2_images.part000000000187/UNK.4_2729_20000_0.12885_0.67505_0.2397.png
                gene_name: UNK
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 61 percent done.
UPF3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.199815e-02	ci left: 7.520101e-01	ci right 7.688379e-01	k: 7605	n:10000
Cons ci ratio: 4.332986e-02	ci left: 4.402151e-01	ci right 4.598141e-01	k: 4500	n:10000
KS ci ratio: 2.756493e-02	ci left: 6.597794e-01	ci right 6.783220e-01	k: 6691	n:10000
UPF3B   10000 perm   2 sec   (5900 perm/sec)   p_kst 6.691000e-01   p_cons 4.500000e-01   p_joint 7.605000e-01

Outputting figure to mutsig2_images.part000000000187/UPF3B.4_1496_10000_0.6691_0.45_0.7605.png
                gene_name: UPF3B
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 63 percent done.
UPRT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.879990e-02	ci left: 3.825137e-01	ci right 4.017492e-01	k: 3921	n:10000
Cons ci ratio: 1.378589e-01	ci left: 6.962154e-02	ci right 8.002777e-02	k: 747	n:10000
KS ci ratio: 3.823406e-02	ci left: 5.025508e-01	ci right 5.222420e-01	k: 5124	n:10000
UPRT   10000 perm   2 sec   (6225 perm/sec)   p_kst 5.124000e-01   p_cons 7.470000e-02   p_joint 3.921000e-01

Joint ci ratio: 3.386729e-02	ci left: 3.942972e-01	ci right 4.079316e-01	k: 8022	n:20000
Cons ci ratio: 9.841040e-02	ci left: 6.987174e-02	ci right 7.715284e-02	k: 1469	n:20000
KS ci ratio: 2.720574e-02	ci left: 5.023458e-01	ci right 5.162515e-01	k: 10186	n:20000
UPRT   20000 perm   4 sec   (5666 perm/sec)   p_kst 5.093000e-01   p_cons 7.345000e-02   p_joint 4.011000e-01

Outputting figure to mutsig2_images.part000000000187/UPRT.4_958_20000_0.5093_0.07345_0.4011.png
                gene_name: UPRT
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.073 
      ci_cons_bounds_left: 0.070 
     ci_cons_bounds_right: 0.077 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 64 percent done.
USO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.203653e-02	ci left: 9.082308e-01	ci right 9.193268e-01	k: 9139	n:10000
Cons ci ratio: 3.918628e-02	ci left: 4.902514e-01	ci right 5.099486e-01	k: 5001	n:10000
KS ci ratio: 2.490568e-02	ci left: 7.034174e-01	ci right 7.212588e-01	k: 7124	n:10000
USO1   10000 perm   2 sec   (5714 perm/sec)   p_kst 7.124000e-01   p_cons 5.001000e-01   p_joint 9.139000e-01

Outputting figure to mutsig2_images.part000000000187/USO1.4_2826_10000_0.7124_0.5001_0.9139.png
                gene_name: USO1
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 66 percent done.
USP20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.097315e-02	ci left: 9.221388e-01	ci right 9.324107e-01	k: 9274	n:10000
KS ci ratio: 2.360957e-02	ci left: 7.250203e-01	ci right 7.424434e-01	k: 7338	n:10000
USP20   10000 perm   2 sec   (5690 perm/sec)   p_kst 7.338000e-01   p_cons 9.274000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/USP20.4_2837_10000_0.7338_0.9274_1.png
                gene_name: USP20
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
USP21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.786148e-02	ci left: 8.205599e-01	ci right 8.354485e-01	k: 8281	n:10000
Cons ci ratio: 3.593554e-02	ci left: 5.334756e-01	ci right 5.530992e-01	k: 5433	n:10000
KS ci ratio: 2.932725e-02	ci left: 6.316085e-01	ci right 6.505093e-01	k: 6411	n:10000
USP21   10000 perm   2 sec   (5832 perm/sec)   p_kst 6.411000e-01   p_cons 5.433000e-01   p_joint 8.281000e-01

Outputting figure to mutsig2_images.part000000000187/USP21.4_1746_10000_0.6411_0.5433_0.8281.png
                gene_name: USP21
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 69 percent done.
ULK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.431236e-02	ci left: 1.403092e-01	ci right 1.542969e-01	k: 1472	n:10000
Cons ci ratio: 6.169492e-02	ci left: 2.786422e-01	ci right 2.964817e-01	k: 2875	n:10000
KS ci ratio: 1.097680e-01	ci left: 1.068582e-01	ci right 1.193681e-01	k: 1130	n:10000
ULK3   10000 perm   2 sec   (6147 perm/sec)   p_kst 1.130000e-01   p_cons 2.875000e-01   p_joint 1.472000e-01

Joint ci ratio: 7.681736e-02	ci left: 1.107573e-01	ci right 1.196549e-01	k: 2303	n:20000
Cons ci ratio: 4.323447e-02	ci left: 2.849590e-01	ci right 2.976017e-01	k: 5825	n:20000
KS ci ratio: 7.796938e-02	ci left: 1.078084e-01	ci right 1.166047e-01	k: 2243	n:20000
ULK3   20000 perm   4 sec   (5466 perm/sec)   p_kst 1.121500e-01   p_cons 2.912500e-01   p_joint 1.151500e-01

Outputting figure to mutsig2_images.part000000000187/ULK3.3_1483_20000_0.11215_0.29125_0.11515.png
                gene_name: ULK3
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 71 percent done.
UPF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.707555e-02	ci left: 1.975185e-01	ci right 2.134534e-01	k: 2054	n:10000
Cons ci ratio: 2.577789e-01	ci left: 1.968303e-02	ci right 2.559958e-02	k: 225	n:10000
KS ci ratio: 3.558222e-02	ci left: 5.383830e-01	ci right 5.579889e-01	k: 5482	n:10000
UPF1   10000 perm   2 sec   (5359 perm/sec)   p_kst 5.482000e-01   p_cons 2.250000e-02   p_joint 2.054000e-01

Joint ci ratio: 5.471080e-02	ci left: 1.986315e-01	ci right 2.098546e-01	k: 4084	n:20000
Cons ci ratio: 1.876616e-01	ci left: 1.934382e-02	ci right 2.339700e-02	k: 426	n:20000
KS ci ratio: 2.534035e-02	ci left: 5.377671e-01	ci right 5.516199e-01	k: 10894	n:20000
UPF1   20000 perm   4 sec   (4821 perm/sec)   p_kst 5.447000e-01   p_cons 2.130000e-02   p_joint 2.042000e-01

Joint ci ratio: 4.203933e-02	ci left: 2.199540e-01	ci right 2.294327e-01	k: 6740	n:30000
Cons ci ratio: 1.514834e-01	ci left: 2.017731e-02	ci right 2.351618e-02	k: 654	n:30000
KS ci ratio: 2.077293e-02	ci left: 5.370755e-01	ci right 5.483829e-01	k: 16282	n:30000
UPF1   30000 perm   7 sec   (4614 perm/sec)   p_kst 5.427333e-01   p_cons 2.180000e-02   p_joint 2.246667e-01

Joint ci ratio: 4.265576e-02	ci left: 1.705935e-01	ci right 1.780538e-01	k: 6972	n:40000
Cons ci ratio: 1.320677e-01	ci left: 2.012510e-02	ci right 2.299494e-02	k: 861	n:40000
KS ci ratio: 1.794784e-02	ci left: 5.390035e-01	ci right 5.487902e-01	k: 21756	n:40000
UPF1   40000 perm   9 sec   (4479 perm/sec)   p_kst 5.439000e-01   p_cons 2.152500e-02   p_joint 1.743000e-01

Joint ci ratio: 3.259917e-02	ci left: 2.206499e-01	ci right 2.279821e-01	k: 11215	n:50000
Cons ci ratio: 1.182093e-01	ci left: 2.024649e-02	ci right 2.280948e-02	k: 1075	n:50000
KS ci ratio: 1.605185e-02	ci left: 5.395619e-01	ci right 5.483130e-01	k: 27197	n:50000
UPF1   50000 perm   11 sec   (4385 perm/sec)   p_kst 5.439400e-01   p_cons 2.150000e-02   p_joint 2.243000e-01

Joint ci ratio: 3.112222e-02	ci left: 2.058518e-01	ci right 2.123763e-01	k: 12546	n:60000
Cons ci ratio: 1.078759e-01	ci left: 2.037051e-02	ci right 2.270942e-02	k: 1291	n:60000
KS ci ratio: 1.460830e-02	ci left: 5.414720e-01	ci right 5.494569e-01	k: 32728	n:60000
UPF1   60000 perm   14 sec   (4289 perm/sec)   p_kst 5.454667e-01   p_cons 2.151667e-02   p_joint 2.091000e-01

Joint ci ratio: 2.950591e-02	ci left: 1.983917e-01	ci right 2.043473e-01	k: 14095	n:70000
Cons ci ratio: 9.978361e-02	ci left: 2.049399e-02	ci right 2.266021e-02	k: 1509	n:70000
KS ci ratio: 1.354289e-02	ci left: 5.411020e-01	ci right 5.484943e-01	k: 38136	n:70000
UPF1   70000 perm   17 sec   (4202 perm/sec)   p_kst 5.448000e-01   p_cons 2.155714e-02   p_joint 2.013571e-01

Outputting figure to mutsig2_images.part000000000187/UPF1.3_3449_70000_0.5448_0.021557_0.20136.png
                gene_name: UPF1
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.022 
      ci_cons_bounds_left: 0.020 
     ci_cons_bounds_right: 0.023 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.20 

Current progress: 73 percent done.
UQCRC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.165769e-02	ci left: 5.955400e-01	ci right 6.147987e-01	k: 6052	n:10000
KS ci ratio: 1.823030e-02	ci left: 8.145627e-01	ci right 8.296492e-01	k: 8222	n:10000
UQCRC2   10000 perm   2 sec   (6182 perm/sec)   p_kst 8.222000e-01   p_cons 6.052000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/UQCRC2.3_1418_10000_0.8222_0.6052_1.png
                gene_name: UQCRC2
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
URGCP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.770962e-02	ci left: 5.094531e-01	ci right 5.291357e-01	k: 5193	n:10000
Cons ci ratio: 4.495000e-02	ci left: 4.221625e-01	ci right 4.416772e-01	k: 4319	n:10000
KS ci ratio: 5.352662e-02	ci left: 3.396528e-01	ci right 3.584352e-01	k: 3490	n:10000
URGCP   10000 perm   2 sec   (5502 perm/sec)   p_kst 3.490000e-01   p_cons 4.319000e-01   p_joint 5.193000e-01

Outputting figure to mutsig2_images.part000000000187/URGCP.3_2820_10000_0.349_0.4319_0.5193.png
                gene_name: URGCP
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 76 percent done.
UROC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.204951e-01	ci left: 8.990526e-02	ci right 1.015315e-01	k: 956	n:10000
Cons ci ratio: 2.327139e-02	ci left: 7.306776e-01	ci right 7.479828e-01	k: 7394	n:10000
KS ci ratio: 2.371212e-01	ci left: 2.344048e-02	ci right 2.983930e-02	k: 265	n:10000
UROC1   10000 perm   2 sec   (6065 perm/sec)   p_kst 2.650000e-02   p_cons 7.394000e-01   p_joint 9.560000e-02

Joint ci ratio: 9.801514e-02	ci left: 7.040922e-02	ci right 7.771519e-02	k: 1480	n:20000
Cons ci ratio: 1.650894e-02	ci left: 7.319977e-01	ci right 7.442330e-01	k: 14763	n:20000
KS ci ratio: 1.681617e-01	ci left: 2.422215e-02	ci right 2.871694e-02	k: 528	n:20000
UROC1   20000 perm   4 sec   (5459 perm/sec)   p_kst 2.640000e-02   p_cons 7.381500e-01   p_joint 7.400000e-02

Joint ci ratio: 8.242869e-02	ci left: 6.720326e-02	ci right 7.301366e-02	k: 2102	n:30000
Cons ci ratio: 1.349524e-02	ci left: 7.326828e-01	ci right 7.426711e-01	k: 22131	n:30000
KS ci ratio: 1.388857e-01	ci left: 2.406758e-02	ci right 2.769170e-02	k: 775	n:30000
UROC1   30000 perm   6 sec   (5298 perm/sec)   p_kst 2.583333e-02   p_cons 7.377000e-01   p_joint 7.006667e-02

Joint ci ratio: 7.799389e-02	ci left: 5.707860e-02	ci right 6.173561e-02	k: 2375	n:40000
Cons ci ratio: 1.169480e-02	ci left: 7.331082e-01	ci right 7.417573e-01	k: 29498	n:40000
KS ci ratio: 1.201995e-01	ci left: 2.434115e-02	ci right 2.747819e-02	k: 1035	n:40000
UROC1   40000 perm   8 sec   (5172 perm/sec)   p_kst 2.587500e-02   p_cons 7.374500e-01   p_joint 5.937500e-02

Joint ci ratio: 7.563712e-02	ci left: 4.904850e-02	ci right 5.292384e-02	k: 2548	n:50000
Cons ci ratio: 1.049231e-02	ci left: 7.323739e-01	ci right 7.401187e-01	k: 36813	n:50000
KS ci ratio: 1.058029e-01	ci left: 2.530453e-02	ci right 2.815078e-02	k: 1335	n:50000
UROC1   50000 perm   10 sec   (5007 perm/sec)   p_kst 2.670000e-02   p_cons 7.362600e-01   p_joint 5.096000e-02

Joint ci ratio: 6.792876e-02	ci left: 5.079434e-02	ci right 5.438243e-02	k: 3154	n:60000
Cons ci ratio: 9.559061e-03	ci left: 7.334910e-01	ci right 7.405528e-01	k: 44222	n:60000
KS ci ratio: 9.549462e-02	ci left: 2.601067e-02	ci right 2.863532e-02	k: 1638	n:60000
UROC1   60000 perm   12 sec   (4899 perm/sec)   p_kst 2.730000e-02   p_cons 7.370333e-01   p_joint 5.256667e-02

Outputting figure to mutsig2_images.part000000000187/UROC1.3_2295_60000_0.0273_0.73703_0.052567.png
                gene_name: UROC1
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.054 

Current progress: 78 percent done.
USF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.879861e-02	ci left: 2.985619e-01	ci right 3.167503e-01	k: 3076	n:10000
Cons ci ratio: 5.389372e-02	ci left: 3.365732e-01	ci right 3.553166e-01	k: 3459	n:10000
KS ci ratio: 8.573437e-02	ci left: 1.654360e-01	ci right 1.803551e-01	k: 1728	n:10000
USF1   10000 perm   2 sec   (6569 perm/sec)   p_kst 1.728000e-01   p_cons 3.459000e-01   p_joint 3.076000e-01

Outputting figure to mutsig2_images.part000000000187/USF1.3_973_10000_0.1728_0.3459_0.3076.png
                gene_name: USF1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 80 percent done.
USH1G
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.646388e-02	ci left: 6.777071e-01	ci right 6.959839e-01	k: 6869	n:10000
Cons ci ratio: 8.406407e-02	ci left: 1.710391e-01	ci right 1.861486e-01	k: 1785	n:10000
KS ci ratio: 3.264030e-02	ci left: 5.807868e-01	ci right 6.001604e-01	k: 5905	n:10000
USH1G   10000 perm   1 sec   (7025 perm/sec)   p_kst 5.905000e-01   p_cons 1.785000e-01   p_joint 6.869000e-01

Outputting figure to mutsig2_images.part000000000187/USH1G.3_1398_10000_0.5905_0.1785_0.6869.png
                gene_name: USH1G
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 81 percent done.
UHRF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.883211e-02	ci left: 8.047094e-01	ci right 8.201081e-01	k: 8125	n:10000
Cons ci ratio: 1.619083e-02	ci left: 8.472320e-01	ci right 8.611609e-01	k: 8543	n:10000
KS ci ratio: 6.062823e-02	ci left: 2.857752e-01	ci right 3.037445e-01	k: 2947	n:10000
UHRF2   10000 perm   2 sec   (5564 perm/sec)   p_kst 2.947000e-01   p_cons 8.543000e-01   p_joint 8.125000e-01

Outputting figure to mutsig2_images.part000000000187/UHRF2.2_2473_10000_0.2947_0.8543_0.8125.png
                gene_name: UHRF2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 83 percent done.
ULBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.412003e-02	ci left: 8.787895e-01	ci right 8.913852e-01	k: 8852	n:10000
KS ci ratio: 1.038389e-02	ci left: 9.294731e-01	ci right 9.392720e-01	k: 9345	n:10000
ULBP1   10000 perm   1 sec   (6846 perm/sec)   p_kst 9.345000e-01   p_cons 8.852000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/ULBP1.2_751_10000_0.9345_0.8852_1.png
                gene_name: ULBP1
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
ULBP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.868023e-02	ci left: 4.967503e-01	ci right 5.164458e-01	k: 5066	n:10000
Cons ci ratio: 2.421431e-02	ci left: 7.149223e-01	ci right 7.325471e-01	k: 7238	n:10000
KS ci ratio: 9.079719e-02	ci left: 1.499203e-01	ci right 1.642801e-01	k: 1570	n:10000
ULBP2   10000 perm   1 sec   (7380 perm/sec)   p_kst 1.570000e-01   p_cons 7.238000e-01   p_joint 5.066000e-01

Outputting figure to mutsig2_images.part000000000187/ULBP2.2_757_10000_0.157_0.7238_0.5066.png
                gene_name: ULBP2
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 86 percent done.
UNC5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.784546e-02	ci left: 6.552495e-01	ci right 6.738545e-01	k: 6646	n:10000
KS ci ratio: 8.069985e-02	ci left: 1.831396e-01	ci right 1.986409e-01	k: 1908	n:10000
UNC5A   10000 perm   2 sec   (6089 perm/sec)   p_kst 1.908000e-01   p_cons 6.646000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/UNC5A.2_2589_10000_0.1908_0.6646_1.png
                gene_name: UNC5A
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
UPF3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.493343e-02	ci left: 5.474992e-01	ci right 5.670674e-01	k: 5573	n:10000
Cons ci ratio: 2.019297e-02	ci left: 7.821871e-01	ci right 7.982435e-01	k: 7903	n:10000
KS ci ratio: 7.019825e-02	ci left: 2.292855e-01	ci right 2.460676e-01	k: 2376	n:10000
UPF3A   10000 perm   2 sec   (6493 perm/sec)   p_kst 2.376000e-01   p_cons 7.903000e-01   p_joint 5.573000e-01

Outputting figure to mutsig2_images.part000000000187/UPF3A.2_1471_10000_0.2376_0.7903_0.5573.png
                gene_name: UPF3A
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 90 percent done.
UPK1A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.454048e-03	ci left: 9.782366e-01	ci right 9.836781e-01	k: 9811	n:10000
KS ci ratio: 9.997367e-03	ci left: 9.341299e-01	ci right 9.436124e-01	k: 9390	n:10000
UPK1A   10000 perm   1 sec   (6947 perm/sec)   p_kst 9.390000e-01   p_cons 9.811000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/UPK1A.2_805_10000_0.939_0.9811_1.png
                gene_name: UPK1A
               theta_stop: 0.0100 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
UPK1B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.446792e-02	ci left: 4.274473e-01	ci right 4.469893e-01	k: 4372	n:10000
KS ci ratio: 5.169162e-03	ci left: 9.802710e-01	ci right 9.854422e-01	k: 9830	n:10000
UPK1B   10000 perm   1 sec   (7052 perm/sec)   p_kst 9.830000e-01   p_cons 4.372000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/UPK1B.2_811_10000_0.983_0.4372_1.png
                gene_name: UPK1B
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
UPP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.545109e-02	ci left: 2.552813e-01	ci right 2.726564e-01	k: 2639	n:10000
Cons ci ratio: 6.988973e-02	ci left: 2.308658e-01	ci right 2.476864e-01	k: 2392	n:10000
KS ci ratio: 1.299497e-01	ci left: 7.795586e-02	ci right 8.888826e-02	k: 833	n:10000
UPP2   10000 perm   1 sec   (6879 perm/sec)   p_kst 8.330000e-02   p_cons 2.392000e-01   p_joint 2.639000e-01

Joint ci ratio: 2.988218e-02	ci left: 4.555209e-01	ci right 4.693900e-01	k: 9249	n:20000
Cons ci ratio: 4.969297e-02	ci left: 2.313679e-01	ci right 2.432085e-01	k: 4745	n:20000
KS ci ratio: 9.302034e-02	ci left: 7.774418e-02	ci right 8.537799e-02	k: 1630	n:20000
UPP2   20000 perm   3 sec   (6067 perm/sec)   p_kst 8.150000e-02   p_cons 2.372500e-01   p_joint 4.624500e-01

Outputting figure to mutsig2_images.part000000000187/UPP2.2_1161_20000_0.0815_0.23725_0.46245.png
                gene_name: UPP2
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 95 percent done.
UQCRB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.200715e-02	ci left: 3.527710e-01	ci right 3.717094e-01	k: 3622	n:10000
KS ci ratio: 1.263071e-02	ci left: 9.001114e-01	ci right 9.116509e-01	k: 9060	n:10000
UQCRB   10000 perm   1 sec   (7365 perm/sec)   p_kst 9.060000e-01   p_cons 3.622000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000187/UQCRB.2_352_10000_0.906_0.3622_1.png
                gene_name: UQCRB
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
UQCRC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.579224e-02	ci left: 8.534524e-01	ci right 8.671370e-01	k: 8604	n:10000
Cons ci ratio: 5.068314e-02	ci left: 3.647032e-01	ci right 3.837701e-01	k: 3742	n:10000
KS ci ratio: 9.252758e-03	ci left: 9.427388e-01	ci right 9.515984e-01	k: 9473	n:10000
UQCRC1   10000 perm   2 sec   (6661 perm/sec)   p_kst 9.473000e-01   p_cons 3.742000e-01   p_joint 8.604000e-01

Outputting figure to mutsig2_images.part000000000187/UQCRC1.2_1495_10000_0.9473_0.3742_0.8604.png
                gene_name: UQCRC1
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 98 percent done.
USP22
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.956399e-02	ci left: 7.926319e-01	ci right 8.083926e-01	k: 8006	n:10000
Cons ci ratio: 3.628446e-02	ci left: 5.286693e-01	ci right 5.483083e-01	k: 5385	n:10000
KS ci ratio: 3.086197e-02	ci left: 6.076906e-01	ci right 6.268410e-01	k: 6173	n:10000
USP22   10000 perm   1 sec   (6829 perm/sec)   p_kst 6.173000e-01   p_cons 5.385000e-01   p_joint 8.006000e-01

Outputting figure to mutsig2_images.part000000000187/USP22.2_1630_10000_0.6173_0.5385_0.8006.png
                gene_name: USP22
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.79 
    ci_joint_bounds_right: 0.81 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000187
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 187 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1643>
Subject: Job 9894201: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1643>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000188> was used as the working directory.
Started at Sat Oct  6 00:35:22 2012
Results reported at Sat Oct  6 00:54:14 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000188.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000188.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 188  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000188.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1150.53 sec.
    Max Memory :      3556 MB
    Max Swap   :      6015 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
188
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 188
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 188: processing genes 16859 - 16948
Calculating significance of each gene.
Using projection method.
16859	USP30	9.407201e-01
16860	USP31	8.307278e-02
16861	USP32	5.473351e-01
16862	USP33	1.027293e-01
16863	USP34	8.471839e-01
16864	USP35	9.927743e-01
16865	USP36	8.575729e-01
16866	USP37	9.725233e-01
16867	USP38	7.554848e-01
16868	USP39	7.127218e-01
16869	USP4	7.511731e-01
16870	USP40	6.930094e-01
16871	USP42	9.807236e-01
16872	USP43	8.356472e-01
16873	USP44	1.514115e-02
16874	USP45	2.331355e-01
16875	USP46	4.188483e-01
16876	USP47	8.592938e-01
16877	USP48	2.063339e-01
16878	USP49	9.650672e-01
16879	USP5	7.829255e-01
16880	USP50	1.826970e-01
16881	USP51	5.941567e-01
16882	USP53	3.191198e-01
16883	USP54	7.345676e-01
16884	USP6	5.854550e-01
16885	USP6NL	7.848877e-01
16886	USP7	3.928000e-01
16887	USP8	8.707487e-01
16888	USP9X	9.547342e-01
16889	USP9Y	9.748795e-01
16890	USPL1	2.352669e-01
16891	UST	6.175602e-01
16892	UTP11L	7.054627e-01
16893	UTP14A	5.563134e-01
16894	UTP14C	3.384673e-01
16895	UTP15	4.943185e-01
16896	UTP18	1
16897	UTP20	6.048497e-01
16898	UTP23	6.168249e-01
16899	UTP3	5.511040e-01
16900	UTP6	2.884887e-01
16901	UTRN	2.043729e-01
16902	UTS2	1
16903	UTS2D	1
16904	UTS2R	1
16905	UTY	9.523890e-01
16906	UVRAG	8.802371e-01
16907	UXS1	5.329731e-02
16908	UXT	1
16909	VAC14	9.957019e-01
16910	VAMP1	2.539376e-01
16911	VAMP2	1
16912	VAMP3	1.316016e-01
16913	VAMP4	1.720538e-01
16914	VAMP5	1.185202e-01
16915	VAMP8	1.447553e-01
16916	VANGL1	7.225904e-01
16917	VANGL2	7.439841e-02
16918	VAPA	1
16919	VAPB	1
16920	VARS	9.828218e-01
16921	VARS2	9.526795e-02
16922	VASH1	1
16923	VASH2	1
16924	VASN	1
16925	VASP	2.450079e-01
16926	VAT1	3.435328e-01
16927	VAT1L	8.836361e-01
16928	VAV1	9.371376e-03
16929	VAV2	6.846201e-01
16930	VAV3	2.021957e-02
16931	VAX1	1
16932	VAX2	1
16933	VBP1	1
16934	VCAM1	2.098320e-03
In gene VCAN the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 10247   n = 1	mu =   4.60e-07
16935	VCAN	2.082363e-02
16936	VCL	9.830076e-01
16937	VCP	8.677133e-01
16938	VCPIP1	9.807514e-01
16939	VCX	7.705342e-01
16940	VCX2	1
16941	VCX3B	3.740696e-01
16942	VDAC1	7.147697e-01
16943	VDAC2	1
16944	VDAC3	3.691574e-01
16945	VDR	5.146304e-01
16946	VEGFA	5.173429e-01
16947	VEGFB	1.433199e-01
16948	VEGFC	4.464010e-02
Done

Running MutSig 2:
Scatter job 188: processing genes 16859 - 16948
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
VCAN
Processing conservation and coverage...
97% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.111015e-01	ci left: 1.045169e-01	ci right 1.169109e-01	k: 1106	n:10000
Cons ci ratio: 2.897772e-02	ci left: 6.371392e-01	ci right 6.559753e-01	k: 6466	n:10000
KS ci ratio: 1.203560e-01	ci left: 9.009981e-02	ci right 1.017368e-01	k: 958	n:10000
VCAN   10000 perm   4 sec   (2391 perm/sec)   p_kst 9.580000e-02   p_cons 6.466000e-01   p_joint 1.106000e-01

Joint ci ratio: 6.767631e-02	ci left: 1.387669e-01	ci right 1.485369e-01	k: 2872	n:20000
Cons ci ratio: 1.962426e-02	ci left: 6.595152e-01	ci right 6.726365e-01	k: 13322	n:20000
KS ci ratio: 8.508172e-02	ci left: 9.185310e-02	ci right 1.000648e-01	k: 1918	n:20000
VCAN   20000 perm   11 sec   (1849 perm/sec)   p_kst 9.590000e-02   p_cons 6.661000e-01   p_joint 1.436000e-01

Outputting figure to mutsig2_images.part000000000188/VCAN.36_10247_20000_0.0959_0.6661_0.1436.png
                gene_name: VCAN
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 2 percent done.
UTRN
Processing conservation and coverage...
94% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.180494e-02	ci left: 7.552478e-01	ci right 7.719984e-01	k: 7637	n:10000
Cons ci ratio: 5.952407e-02	ci left: 2.934065e-01	ci right 3.115087e-01	k: 3024	n:10000
KS ci ratio: 1.230957e-02	ci left: 9.045292e-01	ci right 9.158305e-01	k: 9103	n:10000
UTRN   10000 perm   4 sec   (2824 perm/sec)   p_kst 9.103000e-01   p_cons 3.024000e-01   p_joint 7.637000e-01

Outputting figure to mutsig2_images.part000000000188/UTRN.24_10598_10000_0.9103_0.3024_0.7637.png
                gene_name: UTRN
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 3 percent done.
UTP20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.347034e-02	ci left: 5.685494e-01	ci right 5.880049e-01	k: 5783	n:10000
Cons ci ratio: 6.857181e-02	ci left: 2.377814e-01	ci right 2.547666e-01	k: 2462	n:10000
KS ci ratio: 7.385874e-03	ci left: 9.620496e-01	ci right 9.692759e-01	k: 9658	n:10000
UTP20   10000 perm   3 sec   (3690 perm/sec)   p_kst 9.658000e-01   p_cons 2.462000e-01   p_joint 5.783000e-01

Outputting figure to mutsig2_images.part000000000188/UTP20.20_8606_10000_0.9658_0.2462_0.5783.png
                gene_name: UTP20
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 5 percent done.
USP34
Processing conservation and coverage...
91% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.283885e-02	ci left: 1.442309e-01	ci right 1.583729e-01	k: 1512	n:10000
Cons ci ratio: 5.249459e-02	ci left: 3.484968e-01	ci right 3.673860e-01	k: 3579	n:10000
KS ci ratio: 1.450035e-01	ci left: 6.314223e-02	ci right 7.311115e-02	k: 680	n:10000
USP34   10000 perm   3 sec   (3135 perm/sec)   p_kst 6.800000e-02   p_cons 3.579000e-01   p_joint 1.512000e-01

Joint ci ratio: 8.077409e-02	ci left: 1.010787e-01	ci right 1.096364e-01	k: 2106	n:20000
Cons ci ratio: 3.691016e-02	ci left: 3.538911e-01	ci right 3.672494e-01	k: 7211	n:20000
KS ci ratio: 1.035173e-01	ci left: 6.342669e-02	ci right 7.039986e-02	k: 1337	n:20000
USP34   20000 perm   7 sec   (2965 perm/sec)   p_kst 6.685000e-02   p_cons 3.605500e-01   p_joint 1.053000e-01

Joint ci ratio: 6.123904e-02	ci left: 1.164746e-01	ci right 1.238658e-01	k: 3604	n:30000
Cons ci ratio: 3.010216e-02	ci left: 3.556618e-01	ci right 3.665651e-01	k: 10833	n:30000
KS ci ratio: 8.387451e-02	ci left: 6.501313e-02	ci right 7.073756e-02	k: 2035	n:30000
USP34   30000 perm   10 sec   (2870 perm/sec)   p_kst 6.783333e-02   p_cons 3.611000e-01   p_joint 1.201333e-01

Outputting figure to mutsig2_images.part000000000188/USP34.17_10961_30000_0.067833_0.3611_0.12013.png
                gene_name: USP34
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.065 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 7 percent done.
VAV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.819690e-02	ci left: 3.029251e-01	ci right 3.211845e-01	k: 3120	n:10000
Cons ci ratio: 6.625207e-02	ci left: 2.506326e-01	ci right 2.679078e-01	k: 2592	n:10000
KS ci ratio: 5.457943e-02	ci left: 3.309118e-01	ci right 3.495813e-01	k: 3402	n:10000
VAV1   10000 perm   2 sec   (4370 perm/sec)   p_kst 3.402000e-01   p_cons 2.592000e-01   p_joint 3.120000e-01

Outputting figure to mutsig2_images.part000000000188/VAV1.13_2646_10000_0.3402_0.2592_0.312.png
                gene_name: VAV1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 9 percent done.
USP31
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.252190e-02	ci left: 2.178334e-01	ci right 2.343265e-01	k: 2260	n:10000
Cons ci ratio: 5.859226e-02	ci left: 3.000492e-01	ci right 3.182621e-01	k: 3091	n:10000
KS ci ratio: 9.008395e-02	ci left: 1.519811e-01	ci right 1.664180e-01	k: 1591	n:10000
USP31   10000 perm   2 sec   (4509 perm/sec)   p_kst 1.591000e-01   p_cons 3.091000e-01   p_joint 2.260000e-01

Outputting figure to mutsig2_images.part000000000188/USP31.12_4123_10000_0.1591_0.3091_0.226.png
                gene_name: USP31
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 10 percent done.
VAV3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.431310e-02	ci left: 3.330967e-01	ci right 3.517951e-01	k: 3424	n:10000
Cons ci ratio: 6.130578e-02	ci left: 2.812177e-01	ci right 2.991047e-01	k: 2901	n:10000
KS ci ratio: 5.202967e-02	ci left: 3.525721e-01	ci right 3.715083e-01	k: 3620	n:10000
VAV3   10000 perm   2 sec   (5180 perm/sec)   p_kst 3.620000e-01   p_cons 2.901000e-01   p_joint 3.424000e-01

Outputting figure to mutsig2_images.part000000000188/VAV3.12_2677_10000_0.362_0.2901_0.3424.png
                gene_name: VAV3
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 12 percent done.
USP32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.416833e-02	ci left: 5.584231e-01	ci right 5.779372e-01	k: 5682	n:10000
Cons ci ratio: 2.611998e-02	ci left: 6.833505e-01	ci right 7.015373e-01	k: 6925	n:10000
KS ci ratio: 4.652327e-02	ci left: 4.054184e-01	ci right 4.248311e-01	k: 4151	n:10000
USP32   10000 perm   2 sec   (4214 perm/sec)   p_kst 4.151000e-01   p_cons 6.925000e-01   p_joint 5.682000e-01

Outputting figure to mutsig2_images.part000000000188/USP32.10_4951_10000_0.4151_0.6925_0.5682.png
                gene_name: USP32
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 14 percent done.
USP33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.014468e-02	ci left: 9.323699e-01	ci right 9.419735e-01	k: 9373	n:10000
KS ci ratio: 7.021289e-03	ci left: 9.654135e-01	ci right 9.723098e-01	k: 9690	n:10000
USP33   10000 perm   2 sec   (5119 perm/sec)   p_kst 9.690000e-01   p_cons 9.373000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/USP33.10_2937_10000_0.969_0.9373_1.png
                gene_name: USP33
               theta_stop: 0.010 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
USP44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.155970e-02	ci left: 2.795337e-01	ci right 2.973897e-01	k: 2884	n:10000
Cons ci ratio: 6.056996e-02	ci left: 2.861716e-01	ci right 3.041479e-01	k: 2951	n:10000
KS ci ratio: 6.558609e-02	ci left: 2.544899e-01	ci right 2.718482e-01	k: 2631	n:10000
USP44   10000 perm   2 sec   (5240 perm/sec)   p_kst 2.631000e-01   p_cons 2.951000e-01   p_joint 2.884000e-01

Outputting figure to mutsig2_images.part000000000188/USP44.10_2159_10000_0.2631_0.2951_0.2884.png
                gene_name: USP44
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 17 percent done.
USP9X
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.554502e-02	ci left: 6.928268e-01	ci right 7.108555e-01	k: 7019	n:10000
KS ci ratio: 1.948433e-02	ci left: 7.939508e-01	ci right 8.096730e-01	k: 8019	n:10000
USP9X   10000 perm   3 sec   (3633 perm/sec)   p_kst 8.019000e-01   p_cons 7.019000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/USP9X.10_7889_10000_0.8019_0.7019_1.png
                gene_name: USP9X
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 19 percent done.
USP40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.238134e-01	ci left: 8.543267e-02	ci right 9.680682e-02	k: 910	n:10000
Cons ci ratio: 2.859839e-02	ci left: 6.431744e-01	ci right 6.619367e-01	k: 6526	n:10000
KS ci ratio: 2.577789e-01	ci left: 1.968303e-02	ci right 2.559958e-02	k: 225	n:10000
USP40   10000 perm   2 sec   (4553 perm/sec)   p_kst 2.250000e-02   p_cons 6.526000e-01   p_joint 9.100000e-02

Joint ci ratio: 8.625504e-02	ci left: 8.954852e-02	ci right 9.767008e-02	k: 1871	n:20000
Cons ci ratio: 2.022518e-02	ci left: 6.459041e-01	ci right 6.591516e-01	k: 13051	n:20000
KS ci ratio: 1.756369e-01	ci left: 2.216252e-02	ci right 2.647729e-02	k: 485	n:20000
USP40   20000 perm   5 sec   (4139 perm/sec)   p_kst 2.425000e-02   p_cons 6.525500e-01   p_joint 9.355000e-02

Joint ci ratio: 9.624228e-02	ci left: 4.987266e-02	ci right 5.494779e-02	k: 1571	n:30000
Cons ci ratio: 1.654377e-02	ci left: 6.463111e-01	ci right 6.571262e-01	k: 19552	n:30000
KS ci ratio: 1.419187e-01	ci left: 2.303750e-02	ci right 2.658867e-02	k: 743	n:30000
USP40   30000 perm   8 sec   (3989 perm/sec)   p_kst 2.476667e-02   p_cons 6.517333e-01   p_joint 5.236667e-02

Joint ci ratio: 7.470567e-02	ci left: 6.198912e-02	ci right 6.682436e-02	k: 2575	n:40000
Cons ci ratio: 1.439007e-02	ci left: 6.450518e-01	ci right 6.544265e-01	k: 25990	n:40000
KS ci ratio: 1.233527e-01	ci left: 2.310407e-02	ci right 2.616548e-02	k: 984	n:40000
USP40   40000 perm   10 sec   (3907 perm/sec)   p_kst 2.460000e-02   p_cons 6.497500e-01   p_joint 6.437500e-02

Joint ci ratio: 6.751635e-02	ci left: 6.102358e-02	ci right 6.530731e-02	k: 3157	n:50000
Cons ci ratio: 1.331207e-02	ci left: 6.300206e-01	ci right 6.384838e-01	k: 31713	n:50000
KS ci ratio: 1.147681e-01	ci left: 2.148998e-02	ci right 2.412583e-02	k: 1139	n:50000
USP40   50000 perm   13 sec   (3844 perm/sec)   p_kst 2.278000e-02   p_cons 6.342600e-01   p_joint 6.314000e-02

Joint ci ratio: 6.499101e-02	ci left: 5.530574e-02	ci right 5.903724e-02	k: 3429	n:60000
Cons ci ratio: 1.213679e-02	ci left: 6.309827e-01	ci right 6.387042e-01	k: 38091	n:60000
KS ci ratio: 1.046122e-01	ci left: 2.166916e-02	ci right 2.407730e-02	k: 1371	n:60000
USP40   60000 perm   16 sec   (3785 perm/sec)   p_kst 2.285000e-02   p_cons 6.348500e-01   p_joint 5.715000e-02

Joint ci ratio: 6.365872e-02	ci left: 4.974757e-02	ci right 5.303260e-02	k: 3596	n:70000
Cons ci ratio: 1.124603e-02	ci left: 6.308769e-01	ci right 6.380262e-01	k: 44412	n:70000
KS ci ratio: 9.631984e-02	ci left: 2.199982e-02	ci right 2.423995e-02	k: 1617	n:70000
USP40   70000 perm   19 sec   (3728 perm/sec)   p_kst 2.310000e-02   p_cons 6.344571e-01   p_joint 5.137143e-02

Outputting figure to mutsig2_images.part000000000188/USP40.9_3623_70000_0.0231_0.63446_0.051371.png
                gene_name: USP40
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.051 
     ci_joint_bounds_left: 0.050 
    ci_joint_bounds_right: 0.053 

Current progress: 21 percent done.
USP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.518912e-02	ci left: 8.627401e-01	ci right 8.760439e-01	k: 8695	n:10000
Cons ci ratio: 8.654491e-03	ci left: 9.492931e-01	ci right 9.576401e-01	k: 9536	n:10000
KS ci ratio: 3.769452e-02	ci left: 5.096532e-01	ci right 5.293355e-01	k: 5195	n:10000
USP6   10000 perm   2 sec   (4514 perm/sec)   p_kst 5.195000e-01   p_cons 9.536000e-01   p_joint 8.695000e-01

Outputting figure to mutsig2_images.part000000000188/USP6.9_4337_10000_0.5195_0.9536_0.8695.png
                gene_name: USP6
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.88 

Current progress: 22 percent done.
USP7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.169550e-02	ci left: 4.592791e-01	ci right 4.789389e-01	k: 4691	n:10000
Cons ci ratio: 8.415012e-02	ci left: 1.707441e-01	ci right 1.858438e-01	k: 1782	n:10000
KS ci ratio: 3.138680e-02	ci left: 5.996565e-01	ci right 6.188798e-01	k: 6093	n:10000
USP7   10000 perm   2 sec   (4848 perm/sec)   p_kst 6.093000e-01   p_cons 1.782000e-01   p_joint 4.691000e-01

Outputting figure to mutsig2_images.part000000000188/USP7.9_3433_10000_0.6093_0.1782_0.4691.png
                gene_name: USP7
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 24 percent done.
UTP14C
Processing conservation and coverage...
Processing mutations... 
Skipping 4 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.146594e-02	ci left: 5.984516e-01	ci right 6.176854e-01	k: 6081	n:10000
Cons ci ratio: 5.046744e-02	ci left: 3.666925e-01	ci right 3.857796e-01	k: 3762	n:10000
KS ci ratio: 3.734125e-02	ci left: 5.143558e-01	ci right 5.340301e-01	k: 5242	n:10000
UTP14C   10000 perm   2 sec   (5656 perm/sec)   p_kst 5.242000e-01   p_cons 3.762000e-01   p_joint 6.081000e-01

Outputting figure to mutsig2_images.part000000000188/UTP14C.5_2305_10000_0.5242_0.3762_0.6081.png
                gene_name: UTP14C
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 26 percent done.
VCAM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.246508e-02	ci left: 4.501944e-01	ci right 4.698289e-01	k: 4600	n:10000
KS ci ratio: 2.505158e-02	ci left: 7.009962e-01	ci right 7.188814e-01	k: 7100	n:10000
VCAM1   10000 perm   2 sec   (5154 perm/sec)   p_kst 7.100000e-01   p_cons 4.600000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/VCAM1.9_2256_10000_0.71_0.46_1.png
                gene_name: VCAM1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 28 percent done.
USP47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.771208e-02	ci left: 3.932662e-01	ci right 4.125904e-01	k: 4029	n:10000
Cons ci ratio: 9.608188e-03	ci left: 9.386903e-01	ci right 9.478494e-01	k: 9434	n:10000
KS ci ratio: 8.633875e-02	ci left: 1.634706e-01	ci right 1.783216e-01	k: 1708	n:10000
USP47   10000 perm   2 sec   (4631 perm/sec)   p_kst 1.708000e-01   p_cons 9.434000e-01   p_joint 4.029000e-01

Outputting figure to mutsig2_images.part000000000188/USP47.7_3972_10000_0.1708_0.9434_0.4029.png
                gene_name: USP47
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 29 percent done.
USP54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.822146e-02	ci left: 3.881880e-01	ci right 4.074716e-01	k: 3978	n:10000
Cons ci ratio: 2.698805e-02	ci left: 6.691442e-01	ci right 6.875518e-01	k: 6784	n:10000
KS ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
USP54   10000 perm   2 sec   (4496 perm/sec)   p_kst 2.945000e-01   p_cons 6.784000e-01   p_joint 3.978000e-01

Outputting figure to mutsig2_images.part000000000188/USP54.7_5143_10000_0.2945_0.6784_0.3978.png
                gene_name: USP54
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 31 percent done.
USPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.664796e-02	ci left: 3.145320e-01	ci right 3.329708e-01	k: 3237	n:10000
Cons ci ratio: 6.800406e-02	ci left: 2.408450e-01	ci right 2.579012e-01	k: 2493	n:10000
KS ci ratio: 5.404887e-02	ci left: 3.352819e-01	ci right 3.540087e-01	k: 3446	n:10000
USPL1   10000 perm   2 sec   (5053 perm/sec)   p_kst 3.446000e-01   p_cons 2.493000e-01   p_joint 3.237000e-01

Outputting figure to mutsig2_images.part000000000188/USPL1.7_3311_10000_0.3446_0.2493_0.3237.png
                gene_name: USPL1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 33 percent done.
UXS1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.375804e-01	ci left: 2.334629e-02	ci right 2.973355e-02	k: 264	n:10000
Cons ci ratio: 1.147477e-01	ci left: 9.847268e-02	ci right 1.105588e-01	k: 1044	n:10000
KS ci ratio: 3.123971e-01	ci left: 1.307848e-02	ci right 1.800961e-02	k: 154	n:10000
UXS1   10000 perm   2 sec   (5756 perm/sec)   p_kst 1.540000e-02   p_cons 1.044000e-01   p_joint 2.640000e-02

Joint ci ratio: 1.715217e-01	ci left: 2.326367e-02	ci right 2.767576e-02	k: 508	n:20000
Cons ci ratio: 7.460246e-02	ci left: 1.167565e-01	ci right 1.258540e-01	k: 2425	n:20000
KS ci ratio: 2.216308e-01	ci left: 1.369190e-02	ci right 1.715108e-02	k: 307	n:20000
UXS1   20000 perm   4 sec   (5119 perm/sec)   p_kst 1.535000e-02   p_cons 1.212500e-01   p_joint 2.540000e-02

Joint ci ratio: 1.417235e-01	ci left: 2.310186e-02	ci right 2.665763e-02	k: 745	n:30000
Cons ci ratio: 5.918584e-02	ci left: 1.237782e-01	ci right 1.313607e-01	k: 3826	n:30000
KS ci ratio: 1.805657e-01	ci left: 1.406885e-02	ci right 1.689278e-02	k: 463	n:30000
UXS1   30000 perm   6 sec   (4906 perm/sec)   p_kst 1.543333e-02   p_cons 1.275333e-01   p_joint 2.483333e-02

Joint ci ratio: 1.268976e-01	ci left: 2.181961e-02	ci right 2.480015e-02	k: 931	n:40000
Cons ci ratio: 5.132387e-02	ci left: 1.239988e-01	ci right 1.305554e-01	k: 5090	n:40000
KS ci ratio: 1.572378e-01	ci left: 1.409589e-02	ci right 1.652521e-02	k: 611	n:40000
UXS1   40000 perm   8 sec   (4764 perm/sec)   p_kst 1.527500e-02   p_cons 1.272500e-01   p_joint 2.327500e-02

Joint ci ratio: 9.781652e-02	ci left: 2.959573e-02	ci right 3.265902e-02	k: 1555	n:50000
Cons ci ratio: 4.595003e-02	ci left: 1.241327e-01	ci right 1.299906e-01	k: 6352	n:50000
KS ci ratio: 1.400813e-01	ci left: 1.433888e-02	ci right 1.651791e-02	k: 770	n:50000
UXS1   50000 perm   11 sec   (4615 perm/sec)   p_kst 1.540000e-02   p_cons 1.270400e-01   p_joint 3.110000e-02

Joint ci ratio: 9.933041e-02	ci left: 2.404189e-02	ci right 2.657098e-02	k: 1517	n:60000
Cons ci ratio: 4.191060e-02	ci left: 1.245767e-01	ci right 1.299261e-01	k: 7634	n:60000
KS ci ratio: 1.287412e-01	ci left: 1.423620e-02	ci right 1.621110e-02	k: 912	n:60000
UXS1   60000 perm   13 sec   (4522 perm/sec)   p_kst 1.520000e-02   p_cons 1.272333e-01   p_joint 2.528333e-02

Joint ci ratio: 9.422466e-02	ci left: 2.299049e-02	ci right 2.527776e-02	k: 1688	n:70000
Cons ci ratio: 3.885045e-02	ci left: 1.244992e-01	ci right 1.294461e-01	k: 8887	n:70000
KS ci ratio: 1.187487e-01	ci left: 1.441758e-02	ci right 1.625149e-02	k: 1072	n:70000
UXS1   70000 perm   16 sec   (4431 perm/sec)   p_kst 1.531429e-02   p_cons 1.269571e-01   p_joint 2.411429e-02

Joint ci ratio: 7.223963e-02	ci left: 3.421610e-02	ci right 3.679273e-02	k: 2839	n:80000
Cons ci ratio: 3.636942e-02	ci left: 1.244891e-01	ci right 1.291130e-01	k: 10143	n:80000
KS ci ratio: 1.109089e-01	ci left: 1.452160e-02	ci right 1.623881e-02	k: 1229	n:80000
UXS1   80000 perm   18 sec   (4347 perm/sec)   p_kst 1.536250e-02   p_cons 1.267875e-01   p_joint 3.548750e-02

Joint ci ratio: 8.847794e-02	ci left: 2.039923e-02	ci right 2.229847e-02	k: 1920	n:90000
Cons ci ratio: 3.544799e-02	ci left: 1.174978e-01	ci right 1.217490e-01	k: 10765	n:90000
KS ci ratio: 1.033866e-01	ci left: 1.490875e-02	ci right 1.654490e-02	k: 1414	n:90000
UXS1   90000 perm   21 sec   (4278 perm/sec)   p_kst 1.571111e-02   p_cons 1.196111e-01   p_joint 2.133333e-02

Joint ci ratio: 8.461748e-02	ci left: 2.012023e-02	ci right 2.190771e-02	k: 2100	n:100000
Cons ci ratio: 3.361174e-02	ci left: 1.177140e-01	ci right 1.217481e-01	k: 11972	n:100000
KS ci ratio: 9.837475e-02	ci left: 1.486053e-02	ci right 1.640775e-02	k: 1562	n:100000
UXS1   100000 perm   24 sec   (4212 perm/sec)   p_kst 1.562000e-02   p_cons 1.197200e-01   p_joint 2.100000e-02

Outputting figure to mutsig2_images.part000000000188/UXS1.7_1323_100000_0.01562_0.11972_0.021.png
                gene_name: UXS1
               theta_stop: 0.098 
                    nperm: 100000 
                     p_ks: 0.016 
        ci_ks_bounds_left: 0.015 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.022 

Current progress: 34 percent done.
USP48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.621199e-02	ci left: 6.818387e-01	ci right 7.000499e-01	k: 6910	n:10000
Cons ci ratio: 3.303999e-02	ci left: 5.748680e-01	ci right 5.942827e-01	k: 5846	n:10000
KS ci ratio: 5.804816e-02	ci left: 3.040161e-01	ci right 3.222929e-01	k: 3131	n:10000
USP48   10000 perm   2 sec   (4967 perm/sec)   p_kst 3.131000e-01   p_cons 5.846000e-01   p_joint 6.910000e-01

Outputting figure to mutsig2_images.part000000000188/USP48.6_3224_10000_0.3131_0.5846_0.691.png
                gene_name: USP48
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.70 

Current progress: 36 percent done.
USP53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.463854e-02	ci left: 7.078571e-01	ci right 7.256165e-01	k: 7168	n:10000
Cons ci ratio: 2.687682e-02	ci left: 6.709573e-01	ci right 6.893377e-01	k: 6802	n:10000
KS ci ratio: 3.717692e-02	ci left: 5.165574e-01	ci right 5.362273e-01	k: 5264	n:10000
USP53   10000 perm   2 sec   (4811 perm/sec)   p_kst 5.264000e-01   p_cons 6.802000e-01   p_joint 7.168000e-01

Outputting figure to mutsig2_images.part000000000188/USP53.6_3282_10000_0.5264_0.6802_0.7168.png
                gene_name: USP53
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 38 percent done.
USP9Y
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.420220e-02	ci left: 7.151243e-01	ci right 7.327451e-01	k: 7240	n:10000
Cons ci ratio: 2.575415e-03	ci left: 9.943270e-01	ci right 9.969714e-01	k: 9958	n:10000
KS ci ratio: 3.817290e-02	ci left: 5.033509e-01	ci right 5.230414e-01	k: 5132	n:10000
USP9Y   10000 perm   2 sec   (4018 perm/sec)   p_kst 5.132000e-01   p_cons 9.958000e-01   p_joint 7.240000e-01

Outputting figure to mutsig2_images.part000000000188/USP9Y.6_7844_10000_0.5132_0.9958_0.724.png
                gene_name: USP9Y
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 1.00 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 40 percent done.
VARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.465244e-02	ci left: 3.303159e-01	ci right 3.489775e-01	k: 3396	n:10000
Cons ci ratio: 7.987348e-02	ci left: 1.862897e-01	ci right 2.018889e-01	k: 1940	n:10000
KS ci ratio: 5.462809e-02	ci left: 3.305146e-01	ci right 3.491788e-01	k: 3398	n:10000
VARS2   10000 perm   2 sec   (5118 perm/sec)   p_kst 3.398000e-01   p_cons 1.940000e-01   p_joint 3.396000e-01

Outputting figure to mutsig2_images.part000000000188/VARS2.6_3402_10000_0.3398_0.194_0.3396.png
                gene_name: VARS2
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 41 percent done.
VEGFC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.669611e-02	ci left: 4.036251e-01	ci right 4.230255e-01	k: 4133	n:10000
Cons ci ratio: 3.640140e-02	ci left: 5.270673e-01	ci right 5.467112e-01	k: 5369	n:10000
KS ci ratio: 5.097653e-02	ci left: 3.620179e-01	ci right 3.810570e-01	k: 3715	n:10000
VEGFC   10000 perm   2 sec   (5616 perm/sec)   p_kst 3.715000e-01   p_cons 5.369000e-01   p_joint 4.133000e-01

Outputting figure to mutsig2_images.part000000000188/VEGFC.6_1291_10000_0.3715_0.5369_0.4133.png
                gene_name: VEGFC
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 43 percent done.
USP36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.181702e-02	ci left: 7.550454e-01	ci right 7.718009e-01	k: 7635	n:10000
Cons ci ratio: 5.314023e-02	ci left: 3.429316e-01	ci right 3.617544e-01	k: 3523	n:10000
KS ci ratio: 1.080128e-02	ci left: 9.243065e-01	ci right 9.344416e-01	k: 9295	n:10000
USP36   10000 perm   2 sec   (5390 perm/sec)   p_kst 9.295000e-01   p_cons 3.523000e-01   p_joint 7.635000e-01

Outputting figure to mutsig2_images.part000000000188/USP36.5_3444_10000_0.9295_0.3523_0.7635.png
                gene_name: USP36
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 45 percent done.
USP45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.203180e-02	ci left: 4.552854e-01	ci right 4.749349e-01	k: 4651	n:10000
Cons ci ratio: 4.835253e-02	ci left: 3.868937e-01	ci right 4.061666e-01	k: 3965	n:10000
KS ci ratio: 3.789127e-02	ci left: 5.070521e-01	ci right 5.267381e-01	k: 5169	n:10000
USP45   10000 perm   2 sec   (5352 perm/sec)   p_kst 5.169000e-01   p_cons 3.965000e-01   p_joint 4.651000e-01

Outputting figure to mutsig2_images.part000000000188/USP45.5_2513_10000_0.5169_0.3965_0.4651.png
                gene_name: USP45
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.47 

Current progress: 47 percent done.
UTP6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.409930e-02	ci left: 7.168405e-01	ci right 7.344279e-01	k: 7257	n:10000
KS ci ratio: 2.660544e-02	ci left: 6.753898e-01	ci right 6.937026e-01	k: 6846	n:10000
UTP6   10000 perm   2 sec   (5344 perm/sec)   p_kst 6.846000e-01   p_cons 7.257000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/UTP6.5_1870_10000_0.6846_0.7257_1.png
                gene_name: UTP6
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
VANGL2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.106854e-02	ci left: 2.828028e-01	ci right 3.007187e-01	k: 2917	n:10000
Cons ci ratio: 4.744543e-02	ci left: 3.959551e-01	ci right 4.152999e-01	k: 4056	n:10000
KS ci ratio: 7.866854e-02	ci left: 1.910164e-01	ci right 2.067594e-01	k: 1988	n:10000
VANGL2   10000 perm   2 sec   (4986 perm/sec)   p_kst 1.988000e-01   p_cons 4.056000e-01   p_joint 2.917000e-01

Outputting figure to mutsig2_images.part000000000188/VANGL2.5_1594_10000_0.1988_0.4056_0.2917.png
                gene_name: VANGL2
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 50 percent done.
USP38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.671270e-02	ci left: 3.140359e-01	ci right 3.324672e-01	k: 3232	n:10000
Cons ci ratio: 3.620425e-02	ci left: 5.297706e-01	ci right 5.494063e-01	k: 5396	n:10000
KS ci ratio: 8.764072e-02	ci left: 1.593447e-01	ci right 1.740500e-01	k: 1666	n:10000
USP38   10000 perm   2 sec   (5260 perm/sec)   p_kst 1.666000e-01   p_cons 5.396000e-01   p_joint 3.232000e-01

Outputting figure to mutsig2_images.part000000000188/USP38.4_3169_10000_0.1666_0.5396_0.3232.png
                gene_name: USP38
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 52 percent done.
USP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.514666e-02	ci left: 2.057986e-01	ci right 2.219684e-01	k: 2138	n:10000
Cons ci ratio: 3.998010e-03	ci left: 9.876314e-01	ci right 9.916757e-01	k: 9898	n:10000
KS ci ratio: 1.314164e-01	ci left: 7.630693e-02	ci right 8.713821e-02	k: 816	n:10000
USP5   10000 perm   2 sec   (5714 perm/sec)   p_kst 8.160000e-02   p_cons 9.898000e-01   p_joint 2.138000e-01

Joint ci ratio: 6.173909e-02	ci left: 1.625458e-01	ci right 1.729509e-01	k: 3354	n:20000
Cons ci ratio: 2.714258e-03	ci left: 9.891104e-01	ci right 9.918442e-01	k: 19811	n:20000
KS ci ratio: 9.249649e-02	ci left: 7.857610e-02	ci right 8.624582e-02	k: 1647	n:20000
USP5   20000 perm   4 sec   (5143 perm/sec)   p_kst 8.235000e-02   p_cons 9.905500e-01   p_joint 1.677000e-01

Outputting figure to mutsig2_images.part000000000188/USP5.4_2657_20000_0.08235_0.99055_0.1677.png
                gene_name: USP5
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 53 percent done.
UTP14A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.470045e-02	ci left: 5.508059e-01	ci right 5.703587e-01	k: 5606	n:10000
Cons ci ratio: 4.112244e-02	ci left: 4.661697e-01	ci right 4.858443e-01	k: 4760	n:10000
KS ci ratio: 4.419792e-02	ci left: 4.304391e-01	ci right 4.499957e-01	k: 4402	n:10000
UTP14A   10000 perm   2 sec   (5513 perm/sec)   p_kst 4.402000e-01   p_cons 4.760000e-01   p_joint 5.606000e-01

Outputting figure to mutsig2_images.part000000000188/UTP14A.4_2376_10000_0.4402_0.476_0.5606.png
                gene_name: UTP14A
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 55 percent done.
VAV2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.059204e-02	ci left: 1.505090e-01	ci right 1.648910e-01	k: 1576	n:10000
Cons ci ratio: 9.977908e-02	ci left: 1.269892e-01	ci right 1.404250e-01	k: 1336	n:10000
KS ci ratio: 2.236599e-01	ci left: 2.646035e-02	ci right 3.321723e-02	k: 297	n:10000
VAV2   10000 perm   2 sec   (5562 perm/sec)   p_kst 2.970000e-02   p_cons 1.336000e-01   p_joint 1.576000e-01

Joint ci ratio: 1.027377e-01	ci left: 6.435382e-02	ci right 7.137245e-02	k: 1356	n:20000
Cons ci ratio: 6.949443e-02	ci left: 1.324597e-01	ci right 1.420461e-01	k: 2744	n:20000
KS ci ratio: 1.578823e-01	ci left: 2.753511e-02	ci right 3.230286e-02	k: 597	n:20000
VAV2   20000 perm   4 sec   (4985 perm/sec)   p_kst 2.985000e-02   p_cons 1.372000e-01   p_joint 6.780000e-02

Joint ci ratio: 1.267429e-01	ci left: 2.893839e-02	ci right 3.288648e-02	k: 926	n:30000
Cons ci ratio: 5.646838e-02	ci left: 1.344780e-01	ci right 1.423255e-01	k: 4151	n:30000
KS ci ratio: 1.277417e-01	ci left: 2.848615e-02	ci right 3.240548e-02	k: 912	n:30000
VAV2   30000 perm   6 sec   (4764 perm/sec)   p_kst 3.040000e-02   p_cons 1.383667e-01   p_joint 3.086667e-02

Joint ci ratio: 1.138684e-01	ci left: 2.713420e-02	ci right 3.043468e-02	k: 1150	n:40000
Cons ci ratio: 4.918194e-02	ci left: 1.336690e-01	ci right 1.404338e-01	k: 5481	n:40000
KS ci ratio: 1.107845e-01	ci left: 2.866619e-02	ci right 3.205244e-02	k: 1213	n:40000
VAV2   40000 perm   9 sec   (4642 perm/sec)   p_kst 3.032500e-02   p_cons 1.370250e-01   p_joint 2.875000e-02

Joint ci ratio: 7.386756e-02	ci left: 5.134704e-02	ci right 5.530503e-02	k: 2665	n:50000
Cons ci ratio: 4.371110e-02	ci left: 1.355230e-01	ci right 1.415991e-01	k: 6927	n:50000
KS ci ratio: 9.883732e-02	ci left: 2.899053e-02	ci right 3.202430e-02	k: 1524	n:50000
VAV2   50000 perm   11 sec   (4460 perm/sec)   p_kst 3.048000e-02   p_cons 1.385400e-01   p_joint 5.330000e-02

Outputting figure to mutsig2_images.part000000000188/VAV2.4_2757_50000_0.03048_0.13854_0.0533.png
                gene_name: VAV2
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.053 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.055 

Current progress: 57 percent done.
USP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.871812e-02	ci left: 3.833100e-01	ci right 4.025524e-01	k: 3929	n:10000
Cons ci ratio: 1.548209e-02	ci left: 8.582481e-01	ci right 8.717385e-01	k: 8651	n:10000
KS ci ratio: 7.184476e-02	ci left: 2.210904e-01	ci right 2.376675e-01	k: 2293	n:10000
USP4   10000 perm   2 sec   (5575 perm/sec)   p_kst 2.293000e-01   p_cons 8.651000e-01   p_joint 3.929000e-01

Outputting figure to mutsig2_images.part000000000188/USP4.3_2980_10000_0.2293_0.8651_0.3929.png
                gene_name: USP4
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 59 percent done.
USP43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.237781e-02	ci left: 5.847001e-01	ci right 6.040449e-01	k: 5944	n:10000
Cons ci ratio: 6.130578e-02	ci left: 2.812177e-01	ci right 2.991047e-01	k: 2901	n:10000
KS ci ratio: 1.931253e-02	ci left: 7.967918e-01	ci right 8.124303e-01	k: 8047	n:10000
USP43   10000 perm   2 sec   (5123 perm/sec)   p_kst 8.047000e-01   p_cons 2.901000e-01   p_joint 5.944000e-01

Outputting figure to mutsig2_images.part000000000188/USP43.3_3432_10000_0.8047_0.2901_0.5944.png
                gene_name: USP43
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 60 percent done.
USP50
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.591556e-02	ci left: 4.117958e-01	ci right 4.312500e-01	k: 4215	n:10000
Cons ci ratio: 2.534378e-02	ci left: 6.961546e-01	ci right 7.141257e-01	k: 7052	n:10000
KS ci ratio: 6.802223e-02	ci left: 2.407462e-01	ci right 2.578001e-01	k: 2492	n:10000
USP50   10000 perm   2 sec   (6276 perm/sec)   p_kst 2.492000e-01   p_cons 7.052000e-01   p_joint 4.215000e-01

Outputting figure to mutsig2_images.part000000000188/USP50.3_1033_10000_0.2492_0.7052_0.4215.png
                gene_name: USP50
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 62 percent done.
USP51
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.239972e-02	ci left: 9.032959e-01	ci right 9.146645e-01	k: 9091	n:10000
Cons ci ratio: 3.400848e-02	ci left: 5.607287e-01	ci right 5.802302e-01	k: 5705	n:10000
KS ci ratio: 3.701324e-02	ci left: 5.187591e-01	ci right 5.384242e-01	k: 5286	n:10000
USP51   10000 perm   2 sec   (5722 perm/sec)   p_kst 5.286000e-01   p_cons 5.705000e-01   p_joint 9.091000e-01

Outputting figure to mutsig2_images.part000000000188/USP51.3_2140_10000_0.5286_0.5705_0.9091.png
                gene_name: USP51
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 64 percent done.
USP6NL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.771718e-02	ci left: 5.093530e-01	ci right 5.290358e-01	k: 5192	n:10000
Cons ci ratio: 1.688685e-02	ci left: 8.362290e-01	ci right 8.505703e-01	k: 8435	n:10000
KS ci ratio: 5.311696e-02	ci left: 3.431304e-01	ci right 3.619556e-01	k: 3525	n:10000
USP6NL   10000 perm   2 sec   (5695 perm/sec)   p_kst 3.525000e-01   p_cons 8.435000e-01   p_joint 5.192000e-01

Outputting figure to mutsig2_images.part000000000188/USP6NL.3_2602_10000_0.3525_0.8435_0.5192.png
                gene_name: USP6NL
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 66 percent done.
USP8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.849617e-02	ci left: 1.917059e-01	ci right 2.074695e-01	k: 1995	n:10000
Cons ci ratio: 3.926472e-02	ci left: 4.892517e-01	ci right 5.089489e-01	k: 4991	n:10000
KS ci ratio: 9.679164e-02	ci left: 1.340383e-01	ci right 1.477716e-01	k: 1408	n:10000
USP8   10000 perm   2 sec   (5440 perm/sec)   p_kst 1.408000e-01   p_cons 4.991000e-01   p_joint 1.995000e-01

Outputting figure to mutsig2_images.part000000000188/USP8.3_3433_10000_0.1408_0.4991_0.1995.png
                gene_name: USP8
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 67 percent done.
UTP15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.997784e-02	ci left: 4.802562e-01	ci right 4.999496e-01	k: 4901	n:10000
KS ci ratio: 2.561827e-02	ci left: 6.916168e-01	ci right 7.096662e-01	k: 7007	n:10000
UTP15   10000 perm   2 sec   (6131 perm/sec)   p_kst 7.007000e-01   p_cons 4.901000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/UTP15.3_1605_10000_0.7007_0.4901_1.png
                gene_name: UTP15
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 69 percent done.
UTP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.339316e-01	ci left: 7.359257e-02	ci right 8.425426e-02	k: 788	n:10000
Cons ci ratio: 1.185194e-01	ci left: 9.272705e-02	ci right 1.045080e-01	k: 985	n:10000
KS ci ratio: 6.369573e-02	ci left: 2.658691e-01	ci right 2.834624e-01	k: 2746	n:10000
UTP3   10000 perm   2 sec   (6486 perm/sec)   p_kst 2.746000e-01   p_cons 9.850000e-02   p_joint 7.880000e-02

Joint ci ratio: 9.264975e-02	ci left: 7.833140e-02	ci right 8.599059e-02	k: 1642	n:20000
Cons ci ratio: 8.602708e-02	ci left: 8.998976e-02	ci right 9.812870e-02	k: 1880	n:20000
KS ci ratio: 4.492157e-02	ci left: 2.695148e-01	ci right 2.819504e-01	k: 5514	n:20000
UTP3   20000 perm   4 sec   (5593 perm/sec)   p_kst 2.757000e-01   p_cons 9.400000e-02   p_joint 8.210000e-02

Outputting figure to mutsig2_images.part000000000188/UTP3.3_1444_20000_0.2757_0.094_0.0821.png
                gene_name: UTP3
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.094 
      ci_cons_bounds_left: 0.090 
     ci_cons_bounds_right: 0.098 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.086 

Current progress: 71 percent done.
UTY
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.784775e-03	ci left: 9.675208e-01	ci right 9.742012e-01	k: 9710	n:10000
Cons ci ratio: 2.365186e-02	ci left: 7.243132e-01	ci right 7.417508e-01	k: 7331	n:10000
KS ci ratio: 1.816171e-02	ci left: 8.156806e-01	ci right 8.307306e-01	k: 8233	n:10000
UTY   10000 perm   2 sec   (4953 perm/sec)   p_kst 8.233000e-01   p_cons 7.331000e-01   p_joint 9.710000e-01

Outputting figure to mutsig2_images.part000000000188/UTY.3_4419_10000_0.8233_0.7331_0.971.png
                gene_name: UTY
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 72 percent done.
VAMP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.783820e-02	ci left: 5.077523e-01	ci right 5.274374e-01	k: 5176	n:10000
Cons ci ratio: 6.364781e-02	ci left: 2.661660e-01	ci right 2.837652e-01	k: 2749	n:10000
KS ci ratio: 2.482064e-02	ci left: 7.048299e-01	ci right 7.226454e-01	k: 7138	n:10000
VAMP4   10000 perm   2 sec   (6500 perm/sec)   p_kst 7.138000e-01   p_cons 2.749000e-01   p_joint 5.176000e-01

Outputting figure to mutsig2_images.part000000000188/VAMP4.3_454_10000_0.7138_0.2749_0.5176.png
                gene_name: VAMP4
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 74 percent done.
VASP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.249072e-02	ci left: 4.498950e-01	ci right 4.695285e-01	k: 4597	n:10000
Cons ci ratio: 2.475992e-02	ci left: 7.058389e-01	ci right 7.236358e-01	k: 7148	n:10000
KS ci ratio: 5.235785e-02	ci left: 3.496895e-01	ci right 3.685926e-01	k: 3591	n:10000
VASP   10000 perm   2 sec   (6286 perm/sec)   p_kst 3.591000e-01   p_cons 7.148000e-01   p_joint 4.597000e-01

Outputting figure to mutsig2_images.part000000000188/VASP.3_1195_10000_0.3591_0.7148_0.4597.png
                gene_name: VASP
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 76 percent done.
VCPIP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.793088e-02	ci left: 3.910755e-01	ci right 4.103824e-01	k: 4007	n:10000
Cons ci ratio: 1.566060e-02	ci left: 8.554928e-01	ci right 8.690954e-01	k: 8624	n:10000
KS ci ratio: 5.941142e-02	ci left: 2.941996e-01	ci right 3.123152e-01	k: 3032	n:10000
VCPIP1   10000 perm   2 sec   (5301 perm/sec)   p_kst 3.032000e-01   p_cons 8.624000e-01   p_joint 4.007000e-01

Outputting figure to mutsig2_images.part000000000188/VCPIP1.3_3681_10000_0.3032_0.8624_0.4007.png
                gene_name: VCPIP1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 78 percent done.
USP39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.443915e-02	ci left: 2.613165e-01	ci right 2.788176e-01	k: 2700	n:10000
Cons ci ratio: 2.716754e-02	ci left: 6.662236e-01	ci right 6.846741e-01	k: 6755	n:10000
KS ci ratio: 9.148904e-02	ci left: 1.479580e-01	ci right 1.622435e-01	k: 1550	n:10000
USP39   10000 perm   2 sec   (6100 perm/sec)   p_kst 1.550000e-01   p_cons 6.755000e-01   p_joint 2.700000e-01

Outputting figure to mutsig2_images.part000000000188/USP39.2_1750_10000_0.155_0.6755_0.27.png
                gene_name: USP39
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 79 percent done.
USP42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.453827e-02	ci left: 1.397211e-01	ci right 1.536854e-01	k: 1466	n:10000
Cons ci ratio: 1.412556e-01	ci left: 6.642862e-02	ci right 7.662268e-02	k: 714	n:10000
KS ci ratio: 5.380435e-03	ci left: 9.787712e-01	ci right 9.841431e-01	k: 9816	n:10000
USP42   10000 perm   2 sec   (5278 perm/sec)   p_kst 9.816000e-01   p_cons 7.140000e-02   p_joint 1.466000e-01

Joint ci ratio: 5.839100e-02	ci left: 1.785028e-01	ci right 1.892893e-01	k: 3677	n:20000
Cons ci ratio: 1.029413e-01	ci left: 6.410982e-02	ci right 7.111653e-02	k: 1351	n:20000
KS ci ratio: 3.768184e-03	ci left: 9.799558e-01	ci right 9.837023e-01	k: 19638	n:20000
USP42   20000 perm   4 sec   (4750 perm/sec)   p_kst 9.819000e-01   p_cons 6.755000e-02   p_joint 1.838500e-01

Joint ci ratio: 4.431040e-02	ci left: 2.022950e-01	ci right 2.114952e-01	k: 6206	n:30000
Cons ci ratio: 8.427486e-02	ci left: 6.442489e-02	ci right 7.012592e-02	k: 2017	n:30000
KS ci ratio: 3.052288e-03	ci left: 9.806048e-01	ci right 9.836341e-01	k: 29465	n:30000
USP42   30000 perm   7 sec   (4548 perm/sec)   p_kst 9.821667e-01   p_cons 6.723333e-02   p_joint 2.068667e-01

Outputting figure to mutsig2_images.part000000000188/USP42.2_4014_30000_0.98217_0.067233_0.20687.png
                gene_name: USP42
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 81 percent done.
USP46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.966580e-02	ci left: 6.262801e-01	ci right 6.452408e-01	k: 6358	n:10000
KS ci ratio: 1.744606e-02	ci left: 8.272725e-01	ci right 8.419321e-01	k: 8347	n:10000
USP46   10000 perm   2 sec   (6591 perm/sec)   p_kst 8.347000e-01   p_cons 6.358000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/USP46.2_1156_10000_0.8347_0.6358_1.png
                gene_name: USP46
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
UVRAG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.413489e-01	ci left: 2.259324e-02	ci right 2.888717e-02	k: 256	n:10000
Cons ci ratio: 1.523350e-01	ci left: 5.735153e-02	ci right 6.690551e-02	k: 620	n:10000
KS ci ratio: 1.137775e-01	ci left: 1.000319e-01	ci right 1.121987e-01	k: 1060	n:10000
UVRAG   10000 perm   2 sec   (6106 perm/sec)   p_kst 1.060000e-01   p_cons 6.200000e-02   p_joint 2.560000e-02

Joint ci ratio: 1.333766e-01	ci left: 3.863255e-02	ci right 4.420178e-02	k: 827	n:20000
Cons ci ratio: 1.082314e-01	ci left: 5.820936e-02	ci right 6.491880e-02	k: 1230	n:20000
KS ci ratio: 7.953495e-02	ci left: 1.039762e-01	ci right 1.126380e-01	k: 2165	n:20000
UVRAG   20000 perm   4 sec   (5440 perm/sec)   p_kst 1.082500e-01   p_cons 6.150000e-02   p_joint 4.135000e-02

Joint ci ratio: 9.176870e-02	ci left: 5.469633e-02	ci right 5.998981e-02	k: 1719	n:30000
Cons ci ratio: 8.698645e-02	ci left: 6.063560e-02	ci right 6.618266e-02	k: 1901	n:30000
KS ci ratio: 6.455117e-02	ci left: 1.059220e-01	ci right 1.130205e-01	k: 3283	n:30000
UVRAG   30000 perm   6 sec   (5186 perm/sec)   p_kst 1.094333e-01   p_cons 6.336667e-02   p_joint 5.730000e-02

Outputting figure to mutsig2_images.part000000000188/UVRAG.2_2160_30000_0.10943_0.063367_0.0573.png
                gene_name: UVRAG
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.063 
      ci_cons_bounds_left: 0.061 
     ci_cons_bounds_right: 0.066 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.055 
    ci_joint_bounds_right: 0.060 

Current progress: 84 percent done.
VAMP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.444432e-02	ci left: 8.739813e-01	ci right 8.867962e-01	k: 8805	n:10000
KS ci ratio: 2.502117e-02	ci left: 7.015006e-01	ci right 7.193767e-01	k: 7105	n:10000
VAMP3   10000 perm   1 sec   (7083 perm/sec)   p_kst 7.105000e-01   p_cons 8.805000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/VAMP3.2_323_10000_0.7105_0.8805_1.png
                gene_name: VAMP3
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
VAMP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.467656e-02	ci left: 8.705050e-01	ci right 8.834745e-01	k: 8771	n:10000
KS ci ratio: 9.019158e-03	ci left: 9.453375e-01	ci right 9.539982e-01	k: 9498	n:10000
VAMP5   10000 perm   1 sec   (7380 perm/sec)   p_kst 9.498000e-01   p_cons 8.771000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000188/VAMP5.2_363_10000_0.9498_0.8771_1.png
                gene_name: VAMP5
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
VANGL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.296213e-03	ci left: 9.628897e-01	ci right 9.700352e-01	k: 9666	n:10000
Cons ci ratio: 2.486315e-02	ci left: 7.041236e-01	ci right 7.219521e-01	k: 7131	n:10000
KS ci ratio: 2.602805e-02	ci left: 6.848624e-01	ci right 7.030245e-01	k: 6940	n:10000
VANGL1   10000 perm   2 sec   (6507 perm/sec)   p_kst 6.940000e-01   p_cons 7.131000e-01   p_joint 9.666000e-01

Outputting figure to mutsig2_images.part000000000188/VANGL1.2_1603_10000_0.694_0.7131_0.9666.png
                gene_name: VANGL1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 90 percent done.
VAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.438464e-02	ci left: 5.553158e-01	ci right 5.748463e-01	k: 5651	n:10000
Cons ci ratio: 1.762269e-02	ci left: 8.244242e-01	ci right 8.391819e-01	k: 8319	n:10000
KS ci ratio: 5.275826e-02	ci left: 3.462109e-01	ci right 3.650732e-01	k: 3556	n:10000
VAT1   10000 perm   2 sec   (6405 perm/sec)   p_kst 3.556000e-01   p_cons 8.319000e-01   p_joint 5.651000e-01

Outputting figure to mutsig2_images.part000000000188/VAT1.2_1206_10000_0.3556_0.8319_0.5651.png
                gene_name: VAT1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.57 

Current progress: 91 percent done.
VCL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.644727e-03	ci left: 9.493973e-01	ci right 9.577359e-01	k: 9537	n:10000
Cons ci ratio: 6.073045e-02	ci left: 2.850816e-01	ci right 3.030385e-01	k: 2940	n:10000
KS ci ratio: 2.914909e-02	ci left: 6.344240e-01	ci right 6.532922e-01	k: 6439	n:10000
VCL   10000 perm   2 sec   (4635 perm/sec)   p_kst 6.439000e-01   p_cons 2.940000e-01   p_joint 9.537000e-01

Outputting figure to mutsig2_images.part000000000188/VCL.2_3493_10000_0.6439_0.294_0.9537.png
                gene_name: VCL
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 93 percent done.
VCP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.662153e-02	ci left: 5.240640e-01	ci right 5.437162e-01	k: 5339	n:10000
Cons ci ratio: 7.152117e-02	ci left: 2.226698e-01	ci right 2.392872e-01	k: 2309	n:10000
KS ci ratio: 3.899088e-02	ci left: 4.927508e-01	ci right 5.124477e-01	k: 5026	n:10000
VCP   10000 perm   2 sec   (5919 perm/sec)   p_kst 5.026000e-01   p_cons 2.309000e-01   p_joint 5.339000e-01

Outputting figure to mutsig2_images.part000000000188/VCP.2_2489_10000_0.5026_0.2309_0.5339.png
                gene_name: VCP
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 95 percent done.
VDR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.954424e-02	ci left: 6.281901e-01	ci right 6.471296e-01	k: 6377	n:10000
Cons ci ratio: 3.275514e-02	ci left: 5.790813e-01	ci right 5.984670e-01	k: 5888	n:10000
KS ci ratio: 9.294744e-02	ci left: 1.439367e-01	ci right 1.580673e-01	k: 1509	n:10000
VDR   10000 perm   1 sec   (6873 perm/sec)   p_kst 1.509000e-01   p_cons 5.888000e-01   p_joint 6.377000e-01

Outputting figure to mutsig2_images.part000000000188/VDR.2_1316_10000_0.1509_0.5888_0.6377.png
                gene_name: VDR
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 97 percent done.
VEGFA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.145810e-01	ci left: 1.943009e-03	ci right 4.162249e-03	k: 29	n:10000
Cons ci ratio: 9.401317e-02	ci left: 1.410934e-01	ci right 1.551123e-01	k: 1480	n:10000
KS ci ratio: 4.337666e-01	ci left: 6.348452e-03	ci right 9.946939e-03	k: 80	n:10000
VEGFA   10000 perm   2 sec   (6665 perm/sec)   p_kst 8.000000e-03   p_cons 1.480000e-01   p_joint 2.900000e-03

Joint ci ratio: 2.301256e-01	ci left: 1.265334e-02	ci right 1.599006e-02	k: 285	n:20000
Cons ci ratio: 6.507885e-02	ci left: 1.485299e-01	ci right 1.585711e-01	k: 3070	n:20000
KS ci ratio: 3.048355e-01	ci left: 6.950867e-03	ci right 9.495224e-03	k: 163	n:20000
VEGFA   20000 perm   3 sec   (5855 perm/sec)   p_kst 8.150000e-03   p_cons 1.535000e-01   p_joint 1.425000e-02

Joint ci ratio: 2.006145e-01	ci left: 1.130517e-02	ci right 1.385719e-02	k: 376	n:30000
Cons ci ratio: 5.338705e-02	ci left: 1.482512e-01	ci right 1.564162e-01	k: 4569	n:30000
KS ci ratio: 2.509646e-01	ci left: 7.054391e-03	ci right 9.109257e-03	k: 241	n:30000
VEGFA   30000 perm   5 sec   (5520 perm/sec)   p_kst 8.033333e-03   p_cons 1.523000e-01   p_joint 1.253333e-02

Joint ci ratio: 2.891075e-01	ci left: 3.914153e-03	ci right 5.259327e-03	k: 182	n:40000
Cons ci ratio: 4.618252e-02	ci left: 1.490888e-01	ci right 1.561617e-01	k: 6104	n:40000
KS ci ratio: 2.172295e-01	ci left: 7.197650e-03	ci right 8.974878e-03	k: 322	n:40000
VEGFA   40000 perm   8 sec   (5306 perm/sec)   p_kst 8.050000e-03   p_cons 1.526000e-01   p_joint 4.550000e-03

Joint ci ratio: 1.819265e-01	ci left: 8.362639e-03	ci right 1.005508e-02	k: 459	n:50000
Cons ci ratio: 4.141027e-02	ci left: 1.488237e-01	ci right 1.551368e-01	k: 7598	n:50000
KS ci ratio: 1.939940e-01	ci left: 7.313959e-03	ci right 8.903947e-03	k: 404	n:50000
VEGFA   50000 perm   10 sec   (5170 perm/sec)   p_kst 8.080000e-03   p_cons 1.519600e-01   p_joint 9.180000e-03

Joint ci ratio: 1.579060e-01	ci left: 9.363400e-03	ci right 1.098451e-02	k: 609	n:60000
Cons ci ratio: 3.783359e-02	ci left: 1.488878e-01	ci right 1.546459e-01	k: 9105	n:60000
KS ci ratio: 1.733548e-01	ci left: 7.717154e-03	ci right 9.197648e-03	k: 506	n:60000
VEGFA   60000 perm   12 sec   (5036 perm/sec)   p_kst 8.433333e-03   p_cons 1.517500e-01   p_joint 1.015000e-02

Joint ci ratio: 1.361713e-01	ci left: 1.090275e-02	ci right 1.250954e-02	k: 818	n:70000
Cons ci ratio: 3.512593e-02	ci left: 1.483833e-01	ci right 1.537028e-01	k: 10572	n:70000
KS ci ratio: 1.609765e-01	ci left: 7.723488e-03	ci right 9.089161e-03	k: 587	n:70000
VEGFA   70000 perm   14 sec   (4934 perm/sec)   p_kst 8.385714e-03   p_cons 1.510286e-01   p_joint 1.168571e-02

Joint ci ratio: 1.368643e-01	ci left: 9.454905e-03	ci right 1.085596e-02	k: 811	n:80000
Cons ci ratio: 3.288205e-02	ci left: 1.483639e-01	ci right 1.533364e-01	k: 12067	n:80000
KS ci ratio: 1.501300e-01	ci left: 7.815301e-03	ci right 9.095730e-03	k: 675	n:80000
VEGFA   80000 perm   16 sec   (4849 perm/sec)   p_kst 8.437500e-03   p_cons 1.508375e-01   p_joint 1.013750e-02

Joint ci ratio: 1.378011e-01	ci left: 8.296720e-03	ci right 9.535243e-03	k: 801	n:90000
Cons ci ratio: 3.099680e-02	ci left: 1.485451e-01	ci right 1.532330e-01	k: 13579	n:90000
KS ci ratio: 1.419682e-01	ci left: 7.803353e-03	ci right 9.006433e-03	k: 755	n:90000
VEGFA   90000 perm   19 sec   (4763 perm/sec)   p_kst 8.388889e-03   p_cons 1.508778e-01   p_joint 8.900000e-03

Joint ci ratio: 1.294972e-01	ci left: 8.491685e-03	ci right 9.677052e-03	k: 907	n:100000
Cons ci ratio: 2.944396e-02	ci left: 1.483387e-01	ci right 1.527816e-01	k: 15055	n:100000
KS ci ratio: 1.347638e-01	ci left: 7.824303e-03	ci right 8.964487e-03	k: 838	n:100000
VEGFA   100000 perm   21 sec   (4667 perm/sec)   p_kst 8.380000e-03   p_cons 1.505500e-01   p_joint 9.070000e-03

Joint ci ratio: 1.234583e-01	ci left: 8.520828e-03	ci right 9.650738e-03	k: 998	n:110000
Cons ci ratio: 2.809829e-02	ci left: 1.482200e-01	ci right 1.524530e-01	k: 16536	n:110000
KS ci ratio: 1.284152e-01	ci left: 7.860310e-03	ci right 8.947667e-03	k: 923	n:110000
VEGFA   110000 perm   24 sec   (4566 perm/sec)   p_kst 8.390909e-03   p_cons 1.503273e-01   p_joint 9.072727e-03

Joint ci ratio: 1.125930e-01	ci left: 9.436641e-03	ci right 1.057056e-02	k: 1199	n:120000
Cons ci ratio: 2.692084e-02	ci left: 1.481332e-01	ci right 1.521837e-01	k: 18018	n:120000
KS ci ratio: 1.219157e-01	ci left: 8.020648e-03	ci right 9.069976e-03	k: 1024	n:120000
VEGFA   120000 perm   27 sec   (4461 perm/sec)   p_kst 8.533333e-03   p_cons 1.501500e-01   p_joint 9.991667e-03

Joint ci ratio: 1.130655e-01	ci left: 8.643268e-03	ci right 9.686495e-03	k: 1190	n:130000
Cons ci ratio: 2.585737e-02	ci left: 1.482848e-01	ci right 1.521769e-01	k: 19529	n:130000
KS ci ratio: 1.170487e-01	ci left: 8.052916e-03	ci right 9.061497e-03	k: 1111	n:130000
VEGFA   130000 perm   30 sec   (4390 perm/sec)   p_kst 8.546154e-03   p_cons 1.502231e-01   p_joint 9.153846e-03

Joint ci ratio: 1.067331e-01	ci left: 9.033248e-03	ci right 1.005865e-02	k: 1335	n:140000
Cons ci ratio: 2.488707e-02	ci left: 1.486591e-01	ci right 1.524125e-01	k: 21074	n:140000
KS ci ratio: 1.133913e-01	ci left: 7.984093e-03	ci right 8.950716e-03	k: 1184	n:140000
VEGFA   140000 perm   32 sec   (4321 perm/sec)   p_kst 8.457143e-03   p_cons 1.505286e-01   p_joint 9.535714e-03

Joint ci ratio: 1.013913e-01	ci left: 9.366136e-03	ci right 1.037295e-02	k: 1479	n:150000
Cons ci ratio: 2.405095e-02	ci left: 1.486409e-01	ci right 1.522660e-01	k: 22567	n:150000
KS ci ratio: 1.096615e-01	ci left: 7.983239e-03	ci right 8.915911e-03	k: 1266	n:150000
VEGFA   150000 perm   35 sec   (4248 perm/sec)   p_kst 8.440000e-03   p_cons 1.504467e-01   p_joint 9.860000e-03

Joint ci ratio: 9.568280e-02	ci left: 9.884264e-03	ci right 1.088360e-02	k: 1660	n:160000
Cons ci ratio: 2.326763e-02	ci left: 1.489129e-01	ci right 1.524247e-01	k: 24106	n:160000
KS ci ratio: 1.064365e-01	ci left: 7.958607e-03	ci right 8.859343e-03	k: 1344	n:160000
VEGFA   160000 perm   38 sec   (4180 perm/sec)   p_kst 8.400000e-03   p_cons 1.506625e-01   p_joint 1.037500e-02

Joint ci ratio: 9.775355e-02	ci left: 8.912292e-03	ci right 9.833968e-03	k: 1592	n:170000
Cons ci ratio: 2.257328e-02	ci left: 1.489614e-01	ci right 1.523682e-01	k: 25612	n:170000
KS ci ratio: 1.034802e-01	ci left: 7.937228e-03	ci right 8.809075e-03	k: 1422	n:170000
VEGFA   170000 perm   41 sec   (4112 perm/sec)   p_kst 8.364706e-03   p_cons 1.506588e-01   p_joint 9.364706e-03

Joint ci ratio: 1.002200e-01	ci left: 8.005205e-03	ci right 8.855185e-03	k: 1516	n:180000
Cons ci ratio: 2.194236e-02	ci left: 1.489506e-01	ci right 1.522607e-01	k: 27108	n:180000
KS ci ratio: 1.008589e-01	ci left: 7.902283e-03	ci right 8.747001e-03	k: 1497	n:180000
VEGFA   180000 perm   44 sec   (4049 perm/sec)   p_kst 8.316667e-03   p_cons 1.506000e-01   p_joint 8.422222e-03

Joint ci ratio: 9.734112e-02	ci left: 8.051003e-03	ci right 8.879888e-03	k: 1607	n:190000
Cons ci ratio: 2.138178e-02	ci left: 1.487011e-01	ci right 1.519201e-01	k: 28558	n:190000
KS ci ratio: 9.777129e-02	ci left: 7.979102e-03	ci right 8.804423e-03	k: 1593	n:190000
VEGFA   190000 perm   48 sec   (3991 perm/sec)   p_kst 8.384211e-03   p_cons 1.503053e-01   p_joint 8.457895e-03

Outputting figure to mutsig2_images.part000000000188/VEGFA.2_1297_190000_0.0083842_0.15031_0.0084579.png
                gene_name: VEGFA
               theta_stop: 0.098 
                    nperm: 190000 
                     p_ks: 0.0084 
        ci_ks_bounds_left: 0.0080 
       ci_ks_bounds_right: 0.0088 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.0085 
     ci_joint_bounds_left: 0.0081 
    ci_joint_bounds_right: 0.0089 

Current progress: 98 percent done.
VEGFB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.184266e-01	ci left: 2.778487e-02	ci right 3.469176e-02	k: 311	n:10000
Cons ci ratio: 7.662992e-02	ci left: 1.993910e-01	ci right 2.153799e-01	k: 2073	n:10000
KS ci ratio: 1.011330e+00	ci left: 7.655977e-04	ci right 2.347848e-03	k: 14	n:10000
VEGFB   10000 perm   1 sec   (7278 perm/sec)   p_kst 1.400000e-03   p_cons 2.073000e-01   p_joint 3.110000e-02

Joint ci ratio: 1.925569e-01	ci left: 1.834288e-02	ci right 2.229831e-02	k: 405	n:20000
Cons ci ratio: 5.348739e-02	ci left: 2.060061e-01	ci right 2.173778e-01	k: 4233	n:20000
KS ci ratio: 6.438316e-01	ci left: 1.261006e-03	ci right 2.491096e-03	k: 36	n:20000
VEGFB   20000 perm   3 sec   (6405 perm/sec)   p_kst 1.800000e-03   p_cons 2.116500e-01   p_joint 2.025000e-02

Joint ci ratio: 2.530818e-01	ci left: 6.929423e-03	ci right 8.967601e-03	k: 237	n:30000
Cons ci ratio: 4.355068e-02	ci left: 2.079815e-01	ci right 2.172742e-01	k: 6378	n:30000
KS ci ratio: 5.329553e-01	ci left: 1.323626e-03	ci right 2.310215e-03	k: 53	n:30000
VEGFB   30000 perm   5 sec   (6054 perm/sec)   p_kst 1.766667e-03   p_cons 2.126000e-01   p_joint 7.900000e-03

Joint ci ratio: 2.221353e-01	ci left: 6.866777e-03	ci right 8.605832e-03	k: 308	n:40000
Cons ci ratio: 3.781018e-02	ci left: 2.077797e-01	ci right 2.158122e-01	k: 8471	n:40000
KS ci ratio: 4.647996e-01	ci left: 1.364457e-03	ci right 2.210510e-03	k: 70	n:40000
VEGFB   40000 perm   7 sec   (5780 perm/sec)   p_kst 1.750000e-03   p_cons 2.117750e-01   p_joint 7.700000e-03

Joint ci ratio: 2.011257e-01	ci left: 6.781464e-03	ci right 8.316542e-03	k: 376	n:50000
Cons ci ratio: 3.384688e-02	ci left: 2.079274e-01	ci right 2.151062e-01	k: 10575	n:50000
KS ci ratio: 4.223366e-01	ci left: 1.358118e-03	ci right 2.101654e-03	k: 85	n:50000
VEGFB   50000 perm   9 sec   (5598 perm/sec)   p_kst 1.700000e-03   p_cons 2.115000e-01   p_joint 7.520000e-03

Joint ci ratio: 1.868334e-01	ci left: 6.602648e-03	ci right 7.978990e-03	k: 436	n:60000
Cons ci ratio: 3.088891e-02	ci left: 2.083375e-01	ci right 2.148904e-01	k: 12696	n:60000
KS ci ratio: 3.786195e-01	ci left: 1.446622e-03	ci right 2.136337e-03	k: 106	n:60000
VEGFB   60000 perm   11 sec   (5443 perm/sec)   p_kst 1.766667e-03   p_cons 2.116000e-01   p_joint 7.266667e-03

Joint ci ratio: 1.748555e-01	ci left: 6.505035e-03	ci right 7.764911e-03	k: 498	n:70000
Cons ci ratio: 2.857333e-02	ci left: 2.088633e-01	ci right 2.149320e-01	k: 14832	n:70000
KS ci ratio: 3.531413e-01	ci left: 1.447541e-03	ci right 2.080622e-03	k: 122	n:70000
VEGFB   70000 perm   13 sec   (5305 perm/sec)   p_kst 1.742857e-03   p_cons 2.118857e-01   p_joint 7.114286e-03

Joint ci ratio: 9.738778e-02	ci left: 1.888243e-02	ci right 2.082761e-02	k: 1587	n:80000
Cons ci ratio: 2.511297e-02	ci left: 2.305221e-01	ci right 2.363973e-01	k: 18676	n:80000
KS ci ratio: 3.334025e-01	ci left: 1.437945e-03	ci right 2.024139e-03	k: 137	n:80000
VEGFB   80000 perm   15 sec   (5180 perm/sec)   p_kst 1.712500e-03   p_cons 2.334500e-01   p_joint 1.983750e-02

Joint ci ratio: 9.262812e-02	ci left: 1.860658e-02	ci right 2.042457e-02	k: 1755	n:90000
Cons ci ratio: 2.366472e-02	ci left: 2.308719e-01	ci right 2.364119e-01	k: 21027	n:90000
KS ci ratio: 3.197981e-01	ci left: 1.400575e-03	ci right 1.943467e-03	k: 149	n:90000
VEGFB   90000 perm   18 sec   (5064 perm/sec)   p_kst 1.655556e-03   p_cons 2.336333e-01   p_joint 1.950000e-02

Joint ci ratio: 8.753477e-02	ci left: 1.879871e-02	ci right 2.052931e-02	k: 1965	n:100000
Cons ci ratio: 2.244183e-02	ci left: 2.311496e-01	ci right 2.364058e-01	k: 23377	n:100000
KS ci ratio: 3.116104e-01	ci left: 1.334172e-03	ci right 1.835450e-03	k: 157	n:100000
VEGFB   100000 perm   20 sec   (4963 perm/sec)   p_kst 1.570000e-03   p_cons 2.337700e-01   p_joint 1.965000e-02

Joint ci ratio: 8.337469e-02	ci left: 1.887800e-02	ci right 2.052928e-02	k: 2166	n:110000
Cons ci ratio: 2.138703e-02	ci left: 2.314462e-01	ci right 2.364587e-01	k: 25734	n:110000
KS ci ratio: 2.969380e-01	ci left: 1.347242e-03	ci right 1.825110e-03	k: 173	n:110000
VEGFB   110000 perm   23 sec   (4866 perm/sec)   p_kst 1.572727e-03   p_cons 2.339455e-01   p_joint 1.969091e-02

Joint ci ratio: 8.031175e-02	ci left: 1.868427e-02	ci right 2.025574e-02	k: 2335	n:120000
Cons ci ratio: 2.046822e-02	ci left: 2.316982e-01	ci right 2.364980e-01	k: 28091	n:120000
KS ci ratio: 2.872043e-01	ci left: 1.327645e-03	ci right 1.780325e-03	k: 185	n:120000
VEGFB   120000 perm   25 sec   (4772 perm/sec)   p_kst 1.541667e-03   p_cons 2.340917e-01   p_joint 1.945833e-02

Joint ci ratio: 7.712480e-02	ci left: 1.873259e-02	ci right 2.024280e-02	k: 2532	n:130000
Cons ci ratio: 1.967578e-02	ci left: 2.316010e-01	ci right 2.362109e-01	k: 30407	n:130000
KS ci ratio: 2.797878e-01	ci left: 1.296971e-03	ci right 1.725759e-03	k: 195	n:130000
VEGFB   130000 perm   28 sec   (4679 perm/sec)   p_kst 1.500000e-03   p_cons 2.339000e-01   p_joint 1.947692e-02

Joint ci ratio: 5.926769e-02	ci left: 2.940123e-02	ci right 3.120400e-02	k: 4241	n:140000
Cons ci ratio: 1.897787e-02	ci left: 2.313500e-01	ci right 2.357896e-01	k: 32699	n:140000
KS ci ratio: 2.652882e-01	ci left: 1.350747e-03	ci right 1.770331e-03	k: 217	n:140000
VEGFB   140000 perm   30 sec   (4594 perm/sec)   p_kst 1.550000e-03   p_cons 2.335643e-01   p_joint 3.029286e-02

Joint ci ratio: 5.718671e-02	ci left: 2.950405e-02	ci right 3.124750e-02	k: 4555	n:150000
Cons ci ratio: 1.832301e-02	ci left: 2.316467e-01	ci right 2.359370e-01	k: 35068	n:150000
KS ci ratio: 2.577175e-01	ci left: 1.341683e-03	ci right 1.744645e-03	k: 230	n:150000
VEGFB   150000 perm   33 sec   (4513 perm/sec)   p_kst 1.533333e-03   p_cons 2.337867e-01   p_joint 3.036667e-02

Joint ci ratio: 6.931040e-02	ci left: 1.892021e-02	ci right 2.028477e-02	k: 3135	n:160000
Cons ci ratio: 1.772848e-02	ci left: 2.319708e-01	ci right 2.361263e-01	k: 37447	n:160000
KS ci ratio: 2.502470e-01	ci left: 1.339759e-03	ci right 1.728662e-03	k: 244	n:160000
VEGFB   160000 perm   36 sec   (4431 perm/sec)   p_kst 1.525000e-03   p_cons 2.340437e-01   p_joint 1.959375e-02

Joint ci ratio: 6.713828e-02	ci left: 1.899838e-02	ci right 2.032396e-02	k: 3341	n:170000
Cons ci ratio: 1.719224e-02	ci left: 2.321767e-01	ci right 2.362088e-01	k: 39812	n:170000
KS ci ratio: 2.429214e-01	ci left: 1.343734e-03	ci right 1.720652e-03	k: 259	n:170000
VEGFB   170000 perm   39 sec   (4354 perm/sec)   p_kst 1.523529e-03   p_cons 2.341882e-01   p_joint 1.965294e-02

Joint ci ratio: 6.509289e-02	ci left: 1.910672e-02	ci right 2.039771e-02	k: 3554	n:180000
Cons ci ratio: 1.669801e-02	ci left: 2.324445e-01	ci right 2.363640e-01	k: 42192	n:180000
KS ci ratio: 2.357746e-01	ci left: 1.352642e-03	ci right 1.719268e-03	k: 275	n:180000
VEGFB   180000 perm   42 sec   (4282 perm/sec)   p_kst 1.527778e-03   p_cons 2.344000e-01   p_joint 1.974444e-02

Joint ci ratio: 6.311271e-02	ci left: 1.927156e-02	ci right 2.053262e-02	k: 3780	n:190000
Cons ci ratio: 1.624052e-02	ci left: 2.327643e-01	ci right 2.365807e-01	k: 44587	n:190000
KS ci ratio: 2.265204e-01	ci left: 1.395500e-03	ci right 1.756823e-03	k: 298	n:190000
VEGFB   190000 perm   45 sec   (4205 perm/sec)   p_kst 1.568421e-03   p_cons 2.346684e-01   p_joint 1.989474e-02

Joint ci ratio: 6.146741e-02	ci left: 1.931703e-02	ci right 2.054694e-02	k: 3985	n:200000
Cons ci ratio: 1.582352e-02	ci left: 2.329437e-01	ci right 2.366640e-01	k: 46960	n:200000
KS ci ratio: 2.235539e-01	ci left: 1.363467e-03	ci right 1.711237e-03	k: 306	n:200000
VEGFB   200000 perm   48 sec   (4136 perm/sec)   p_kst 1.530000e-03   p_cons 2.348000e-01   p_joint 1.992500e-02

Joint ci ratio: 6.001752e-02	ci left: 1.931163e-02	ci right 2.051119e-02	k: 4180	n:210000
Cons ci ratio: 1.545775e-02	ci left: 2.326275e-01	ci right 2.362561e-01	k: 49232	n:210000
KS ci ratio: 2.193106e-01	ci left: 1.352513e-03	ci right 1.690058e-03	k: 318	n:210000
VEGFB   210000 perm   52 sec   (4068 perm/sec)   p_kst 1.514286e-03   p_cons 2.344381e-01   p_joint 1.990476e-02

Joint ci ratio: 5.871355e-02	ci left: 1.927568e-02	ci right 2.044611e-02	k: 4368	n:220000
Cons ci ratio: 1.510358e-02	ci left: 2.326401e-01	ci right 2.361851e-01	k: 51570	n:220000
KS ci ratio: 2.140089e-01	ci left: 1.359817e-03	ci right 1.689904e-03	k: 334	n:220000
VEGFB   220000 perm   55 sec   (4003 perm/sec)   p_kst 1.518182e-03   p_cons 2.344091e-01   p_joint 1.985455e-02

Joint ci ratio: 5.741396e-02	ci left: 1.929455e-02	ci right 2.043933e-02	k: 4568	n:230000
Cons ci ratio: 1.477287e-02	ci left: 2.326482e-01	ci right 2.361150e-01	k: 53907	n:230000
KS ci ratio: 2.090740e-01	ci left: 1.366575e-03	ci right 1.689674e-03	k: 350	n:230000
VEGFB   230000 perm   58 sec   (3941 perm/sec)   p_kst 1.521739e-03   p_cons 2.343783e-01   p_joint 1.986087e-02

Joint ci ratio: 5.600560e-02	ci left: 1.944361e-02	ci right 2.056802e-02	k: 4800	n:240000
Cons ci ratio: 1.446080e-02	ci left: 2.327105e-01	ci right 2.361043e-01	k: 56257	n:240000
KS ci ratio: 2.044654e-01	ci left: 1.372850e-03	ci right 1.689384e-03	k: 366	n:240000
VEGFB   240000 perm   62 sec   (3879 perm/sec)   p_kst 1.525000e-03   p_cons 2.344042e-01   p_joint 2.000000e-02

Joint ci ratio: 5.555835e-02	ci left: 1.898128e-02	ci right 2.006990e-02	k: 4880	n:250000
Cons ci ratio: 1.416612e-02	ci left: 2.328083e-01	ci right 2.361338e-01	k: 58617	n:250000
KS ci ratio: 2.004110e-01	ci left: 1.374895e-03	ci right 1.684846e-03	k: 381	n:250000
VEGFB   250000 perm   65 sec   (3820 perm/sec)   p_kst 1.524000e-03   p_cons 2.344680e-01   p_joint 1.952000e-02

Joint ci ratio: 5.387234e-02	ci left: 1.941975e-02	ci right 2.049868e-02	k: 5188	n:260000
Cons ci ratio: 1.390811e-02	ci left: 2.324005e-01	ci right 2.356592e-01	k: 60847	n:260000
KS ci ratio: 1.953603e-01	ci left: 1.395128e-03	ci right 1.700771e-03	k: 401	n:260000
VEGFB   260000 perm   69 sec   (3763 perm/sec)   p_kst 1.542308e-03   p_cons 2.340269e-01   p_joint 1.995385e-02

Joint ci ratio: 5.333981e-02	ci left: 1.908775e-02	ci right 2.013742e-02	k: 5294	n:270000
Cons ci ratio: 1.364436e-02	ci left: 2.325297e-01	ci right 2.357279e-01	k: 63214	n:270000
KS ci ratio: 1.918146e-01	ci left: 1.396320e-03	ci right 1.696024e-03	k: 416	n:270000
VEGFB   270000 perm   73 sec   (3707 perm/sec)   p_kst 1.540741e-03   p_cons 2.341259e-01   p_joint 1.960741e-02

Joint ci ratio: 5.238407e-02	ci left: 1.909327e-02	ci right 2.012385e-02	k: 5489	n:280000
Cons ci ratio: 1.340161e-02	ci left: 2.324756e-01	ci right 2.356157e-01	k: 65532	n:280000
KS ci ratio: 1.886740e-01	ci left: 1.394070e-03	ci right 1.687831e-03	k: 430	n:280000
VEGFB   280000 perm   77 sec   (3654 perm/sec)   p_kst 1.535714e-03   p_cons 2.340429e-01   p_joint 1.960357e-02

Joint ci ratio: 5.142720e-02	ci left: 1.913601e-02	ci right 2.014948e-02	k: 5695	n:290000
Cons ci ratio: 1.316871e-02	ci left: 2.324979e-01	ci right 2.355833e-01	k: 67871	n:290000
KS ci ratio: 1.850592e-01	ci left: 1.401878e-03	ci right 1.690989e-03	k: 447	n:290000
VEGFB   290000 perm   81 sec   (3601 perm/sec)   p_kst 1.541379e-03   p_cons 2.340379e-01   p_joint 1.963793e-02

Joint ci ratio: 4.956563e-02	ci left: 1.991687e-02	ci right 2.093242e-02	k: 6126	n:300000
Cons ci ratio: 1.293683e-02	ci left: 2.328152e-01	ci right 2.358500e-01	k: 70299	n:300000
KS ci ratio: 1.830294e-01	ci left: 1.386945e-03	ci right 1.669491e-03	k: 457	n:300000
VEGFB   300000 perm   84 sec   (3552 perm/sec)   p_kst 1.523333e-03   p_cons 2.343300e-01   p_joint 2.042000e-02

Joint ci ratio: 4.966921e-02	ci left: 1.920732e-02	ci right 2.018879e-02	k: 6105	n:310000
Cons ci ratio: 1.271827e-02	ci left: 2.330706e-01	ci right 2.360570e-01	k: 72714	n:310000
KS ci ratio: 1.802949e-01	ci left: 1.385312e-03	ci right 1.662850e-03	k: 471	n:310000
VEGFB   310000 perm   89 sec   (3499 perm/sec)   p_kst 1.519355e-03   p_cons 2.345613e-01   p_joint 1.969355e-02

Joint ci ratio: 4.579215e-02	ci left: 2.187460e-02	ci right 2.290283e-02	k: 7163	n:320000
Cons ci ratio: 1.252545e-02	ci left: 2.328801e-01	ci right 2.358185e-01	k: 74991	n:320000
KS ci ratio: 1.786020e-01	ci left: 1.368882e-03	ci right 1.640274e-03	k: 480	n:320000
VEGFB   320000 perm   93 sec   (3452 perm/sec)   p_kst 1.500000e-03   p_cons 2.343469e-01   p_joint 2.238438e-02

Joint ci ratio: 4.821604e-02	ci left: 1.916269e-02	ci right 2.011244e-02	k: 6479	n:330000
Cons ci ratio: 1.233677e-02	ci left: 2.328285e-01	ci right 2.357216e-01	k: 77310	n:330000
KS ci ratio: 1.755265e-01	ci left: 1.376633e-03	ci right 1.644364e-03	k: 497	n:330000
VEGFB   330000 perm   97 sec   (3407 perm/sec)   p_kst 1.506061e-03   p_cons 2.342727e-01   p_joint 1.963333e-02

Joint ci ratio: 4.176227e-02	ci left: 2.473107e-02	ci right 2.578881e-02	k: 8587	n:340000
Cons ci ratio: 1.214909e-02	ci left: 2.329945e-01	ci right 2.358453e-01	k: 79702	n:340000
KS ci ratio: 1.729414e-01	ci left: 1.378338e-03	ci right 1.642040e-03	k: 512	n:340000
VEGFB   340000 perm   101 sec   (3363 perm/sec)   p_kst 1.505882e-03   p_cons 2.344176e-01   p_joint 2.525588e-02

Joint ci ratio: 4.670299e-02	ci left: 1.927040e-02	ci right 2.019471e-02	k: 6905	n:350000
Cons ci ratio: 1.197124e-02	ci left: 2.331057e-01	ci right 2.359159e-01	k: 82078	n:350000
KS ci ratio: 1.704671e-01	ci left: 1.379972e-03	ci right 1.639822e-03	k: 527	n:350000
VEGFB   350000 perm   105 sec   (3320 perm/sec)   p_kst 1.505714e-03   p_cons 2.345086e-01   p_joint 1.972857e-02

Joint ci ratio: 3.910038e-02	ci left: 2.662978e-02	ci right 2.769451e-02	k: 9777	n:360000
Cons ci ratio: 1.180911e-02	ci left: 2.329643e-01	ci right 2.357344e-01	k: 84365	n:360000
KS ci ratio: 1.676330e-01	ci left: 1.389525e-03	ci right 1.646384e-03	k: 545	n:360000
VEGFB   360000 perm   110 sec   (3276 perm/sec)   p_kst 1.513889e-03   p_cons 2.343472e-01   p_joint 2.715833e-02

Joint ci ratio: 4.553990e-02	ci left: 1.918515e-02	ci right 2.008185e-02	k: 7263	n:370000
Cons ci ratio: 1.164945e-02	ci left: 2.329521e-01	ci right 2.356845e-01	k: 86697	n:370000
KS ci ratio: 1.656728e-01	ci left: 1.385640e-03	ci right 1.638486e-03	k: 558	n:370000
VEGFB   370000 perm   115 sec   (3231 perm/sec)   p_kst 1.508108e-03   p_cons 2.343162e-01   p_joint 1.962973e-02

Joint ci ratio: 4.146733e-02	ci left: 2.249966e-02	ci right 2.345500e-02	k: 8730	n:380000
Cons ci ratio: 1.149254e-02	ci left: 2.330512e-01	ci right 2.357476e-01	k: 89071	n:380000
KS ci ratio: 1.622250e-01	ci left: 1.409744e-03	ci right 1.661113e-03	k: 582	n:380000
VEGFB   380000 perm   119 sec   (3192 perm/sec)   p_kst 1.531579e-03   p_cons 2.343974e-01   p_joint 2.297368e-02

Joint ci ratio: 4.095743e-02	ci left: 2.247849e-02	ci right 2.342092e-02	k: 8949	n:390000
Cons ci ratio: 1.134425e-02	ci left: 2.330686e-01	ci right 2.357302e-01	k: 91415	n:390000
KS ci ratio: 1.613986e-01	ci left: 1.388357e-03	ci right 1.634529e-03	k: 588	n:390000
VEGFB   390000 perm   124 sec   (3154 perm/sec)   p_kst 1.507692e-03   p_cons 2.343974e-01   p_joint 2.294615e-02

Joint ci ratio: 4.044107e-02	ci left: 2.248568e-02	ci right 2.341625e-02	k: 9179	n:400000
Cons ci ratio: 1.119874e-02	ci left: 2.331752e-01	ci right 2.358036e-01	k: 93795	n:400000
KS ci ratio: 1.593819e-01	ci left: 1.389643e-03	ci right 1.632670e-03	k: 603	n:400000
VEGFB   400000 perm   128 sec   (3117 perm/sec)   p_kst 1.507500e-03   p_cons 2.344875e-01   p_joint 2.294750e-02

Joint ci ratio: 4.242574e-02	ci left: 1.996464e-02	ci right 2.083240e-02	k: 8362	n:410000
Cons ci ratio: 1.106079e-02	ci left: 2.332086e-01	ci right 2.358049e-01	k: 96147	n:410000
KS ci ratio: 1.570582e-01	ci left: 1.397914e-03	ci right 1.638487e-03	k: 621	n:410000
VEGFB   410000 perm   134 sec   (3069 perm/sec)   p_kst 1.514634e-03   p_cons 2.345049e-01   p_joint 2.039512e-02

Joint ci ratio: 4.197763e-02	ci left: 1.991333e-02	ci right 2.076950e-02	k: 8542	n:420000
Cons ci ratio: 1.092623e-02	ci left: 2.332930e-01	ci right 2.358583e-01	k: 98521	n:420000
KS ci ratio: 1.553202e-01	ci left: 1.396661e-03	ci right 1.634111e-03	k: 635	n:420000
VEGFB   420000 perm   138 sec   (3034 perm/sec)   p_kst 1.511905e-03   p_cons 2.345738e-01   p_joint 2.033810e-02

Joint ci ratio: 4.148521e-02	ci left: 1.991969e-02	ci right 2.076586e-02	k: 8746	n:430000
Cons ci ratio: 1.079751e-02	ci left: 2.333387e-01	ci right 2.358742e-01	k: 100880	n:430000
KS ci ratio: 1.532848e-01	ci left: 1.402189e-03	ci right 1.637168e-03	k: 652	n:430000
VEGFB   430000 perm   143 sec   (2999 perm/sec)   p_kst 1.516279e-03   p_cons 2.346047e-01   p_joint 2.033953e-02

Joint ci ratio: 4.101674e-02	ci left: 1.991908e-02	ci right 2.075544e-02	k: 8947	n:440000
Cons ci ratio: 1.067343e-02	ci left: 2.333758e-01	ci right 2.358823e-01	k: 103236	n:440000
KS ci ratio: 1.520105e-01	ci left: 1.394366e-03	ci right 1.625915e-03	k: 663	n:440000
VEGFB   440000 perm   148 sec   (2966 perm/sec)   p_kst 1.506818e-03   p_cons 2.346273e-01   p_joint 2.033409e-02

Joint ci ratio: 4.057057e-02	ci left: 1.991194e-02	ci right 2.073869e-02	k: 9145	n:450000
Cons ci ratio: 1.055746e-02	ci left: 2.332782e-01	ci right 2.357563e-01	k: 105532	n:450000
KS ci ratio: 1.505443e-01	ci left: 1.391175e-03	ci right 1.619765e-03	k: 676	n:450000
VEGFB   450000 perm   153 sec   (2934 perm/sec)   p_kst 1.502222e-03   p_cons 2.345156e-01   p_joint 2.032222e-02

Joint ci ratio: 4.016280e-02	ci left: 1.988149e-02	ci right 2.069848e-02	k: 9332	n:460000
Cons ci ratio: 1.044038e-02	ci left: 2.333500e-01	ci right 2.358012e-01	k: 107904	n:460000
KS ci ratio: 1.485815e-01	ci left: 1.398598e-03	ci right 1.625146e-03	k: 694	n:460000
VEGFB   460000 perm   159 sec   (2899 perm/sec)   p_kst 1.508696e-03   p_cons 2.345739e-01   p_joint 2.028696e-02

Joint ci ratio: 3.973513e-02	ci left: 1.988397e-02	ci right 2.069217e-02	k: 9534	n:470000
Cons ci ratio: 1.033096e-02	ci left: 2.332851e-01	ci right 2.357097e-01	k: 110213	n:470000
KS ci ratio: 1.472115e-01	ci left: 1.395477e-03	ci right 1.619251e-03	k: 707	n:470000
VEGFB   470000 perm   164 sec   (2865 perm/sec)   p_kst 1.504255e-03   p_cons 2.344957e-01   p_joint 2.028511e-02

Joint ci ratio: 3.929202e-02	ci left: 1.991528e-02	ci right 2.071552e-02	k: 9750	n:480000
Cons ci ratio: 1.022284e-02	ci left: 2.332957e-01	ci right 2.356950e-01	k: 112557	n:480000
KS ci ratio: 1.449752e-01	ci left: 1.410563e-03	ci right 1.633023e-03	k: 729	n:480000
VEGFB   480000 perm   169 sec   (2834 perm/sec)   p_kst 1.518750e-03   p_cons 2.344938e-01   p_joint 2.031250e-02

Joint ci ratio: 3.888931e-02	ci left: 1.991908e-02	ci right 2.071109e-02	k: 9953	n:490000
Cons ci ratio: 1.011867e-02	ci left: 2.332837e-01	ci right 2.356582e-01	k: 114890	n:490000
KS ci ratio: 1.437016e-01	ci left: 1.407349e-03	ci right 1.627185e-03	k: 742	n:490000
VEGFB   490000 perm   175 sec   (2800 perm/sec)   p_kst 1.514286e-03   p_cons 2.344694e-01   p_joint 2.031224e-02

Joint ci ratio: 3.846202e-02	ci left: 1.996042e-02	ci right 2.074515e-02	k: 10175	n:500000
Cons ci ratio: 1.001506e-02	ci left: 2.333641e-01	ci right 2.357150e-01	k: 117269	n:500000
KS ci ratio: 1.418982e-01	ci left: 1.415844e-03	ci right 1.633997e-03	k: 761	n:500000
VEGFB   500000 perm   181 sec   (2770 perm/sec)   p_kst 1.522000e-03   p_cons 2.345380e-01   p_joint 2.035000e-02

Joint ci ratio: 3.808218e-02	ci left: 1.996521e-02	ci right 2.074221e-02	k: 10379	n:510000
Cons ci ratio: 9.921342e-03	ci left: 2.331968e-01	ci right 2.355239e-01	k: 119523	n:510000
KS ci ratio: 1.405219e-01	ci left: 1.416455e-03	ci right 1.632408e-03	k: 776	n:510000
VEGFB   510000 perm   186 sec   (2741 perm/sec)   p_kst 1.521569e-03   p_cons 2.343588e-01   p_joint 2.035098e-02

Joint ci ratio: 3.771337e-02	ci left: 1.996985e-02	ci right 2.073935e-02	k: 10583	n:520000
Cons ci ratio: 9.829622e-03	ci left: 2.330571e-01	ci right 2.353612e-01	k: 121788	n:520000
KS ci ratio: 1.385729e-01	ci left: 1.430047e-03	ci right 1.644799e-03	k: 798	n:520000
VEGFB   520000 perm   192 sec   (2712 perm/sec)   p_kst 1.534615e-03   p_cons 2.342077e-01   p_joint 2.035192e-02

Joint ci ratio: 3.735684e-02	ci left: 1.997249e-02	ci right 2.073465e-02	k: 10786	n:530000
Cons ci ratio: 9.731130e-03	ci left: 2.332638e-01	ci right 2.355467e-01	k: 124234	n:530000
KS ci ratio: 1.376293e-01	ci left: 1.423102e-03	ci right 1.635237e-03	k: 809	n:530000
VEGFB   530000 perm   198 sec   (2682 perm/sec)   p_kst 1.526415e-03   p_cons 2.344038e-01   p_joint 2.035094e-02

Joint ci ratio: 3.703777e-02	ci left: 1.994570e-02	ci right 2.070020e-02	k: 10973	n:540000
Cons ci ratio: 9.639366e-03	ci left: 2.333205e-01	ci right 2.355823e-01	k: 126603	n:540000
KS ci ratio: 1.365383e-01	ci left: 1.419997e-03	ci right 1.629854e-03	k: 822	n:540000
VEGFB   540000 perm   203 sec   (2655 perm/sec)   p_kst 1.522222e-03   p_cons 2.344500e-01   p_joint 2.032037e-02

Joint ci ratio: 3.669822e-02	ci left: 1.995054e-02	ci right 2.069816e-02	k: 11177	n:550000
Cons ci ratio: 9.552955e-03	ci left: 2.332700e-01	ci right 2.355109e-01	k: 128914	n:550000
KS ci ratio: 1.352300e-01	ci left: 1.422281e-03	ci right 1.630299e-03	k: 838	n:550000
VEGFB   550000 perm   209 sec   (2629 perm/sec)   p_kst 1.523636e-03   p_cons 2.343891e-01   p_joint 2.032182e-02

Joint ci ratio: 3.635479e-02	ci left: 1.996940e-02	ci right 2.071058e-02	k: 11389	n:560000
Cons ci ratio: 9.464117e-03	ci left: 2.333997e-01	ci right 2.356209e-01	k: 131325	n:560000
KS ci ratio: 1.343527e-01	ci left: 1.415863e-03	ci right 1.621492e-03	k: 849	n:560000
VEGFB   560000 perm   215 sec   (2602 perm/sec)   p_kst 1.516071e-03   p_cons 2.345089e-01   p_joint 2.033750e-02

Joint ci ratio: 3.606210e-02	ci left: 1.994241e-02	ci right 2.067651e-02	k: 11575	n:570000
Cons ci ratio: 9.382433e-03	ci left: 2.333445e-01	ci right 2.355459e-01	k: 133633	n:570000
KS ci ratio: 1.327989e-01	ci left: 1.424939e-03	ci right 1.629304e-03	k: 869	n:570000
VEGFB   570000 perm   221 sec   (2576 perm/sec)   p_kst 1.524561e-03   p_cons 2.344439e-01   p_joint 2.030702e-02

Joint ci ratio: 3.576551e-02	ci left: 1.992835e-02	ci right 2.065577e-02	k: 11768	n:580000
Cons ci ratio: 9.303319e-03	ci left: 2.332724e-01	ci right 2.354544e-01	k: 135930	n:580000
KS ci ratio: 1.316687e-01	ci left: 1.425378e-03	ci right 1.627929e-03	k: 884	n:580000
VEGFB   580000 perm   228 sec   (2547 perm/sec)   p_kst 1.524138e-03   p_cons 2.343621e-01   p_joint 2.028966e-02

Joint ci ratio: 3.548217e-02	ci left: 1.990806e-02	ci right 2.062887e-02	k: 11957	n:590000
Cons ci ratio: 9.227742e-03	ci left: 2.331418e-01	ci right 2.353048e-01	k: 138191	n:590000
KS ci ratio: 1.306396e-01	ci left: 1.424169e-03	ci right 1.624844e-03	k: 898	n:590000
VEGFB   590000 perm   234 sec   (2522 perm/sec)   p_kst 1.522034e-03   p_cons 2.342220e-01   p_joint 2.026610e-02

Joint ci ratio: 3.638646e-02	ci left: 1.863126e-02	ci right 1.932339e-02	k: 11385	n:600000
Cons ci ratio: 9.152359e-03	ci left: 2.330790e-01	ci right 2.352236e-01	k: 140490	n:600000
KS ci ratio: 1.293507e-01	ci left: 1.429458e-03	ci right 1.628739e-03	k: 916	n:600000
VEGFB   600000 perm   240 sec   (2497 perm/sec)   p_kst 1.526667e-03   p_cons 2.341500e-01   p_joint 1.897500e-02

Joint ci ratio: 3.610251e-02	ci left: 1.861824e-02	ci right 1.930437e-02	k: 11565	n:610000
Cons ci ratio: 9.075475e-03	ci left: 2.331491e-01	ci right 2.352763e-01	k: 142869	n:610000
KS ci ratio: 1.285130e-01	ci left: 1.425061e-03	ci right 1.622344e-03	k: 928	n:610000
VEGFB   610000 perm   247 sec   (2473 perm/sec)   p_kst 1.521311e-03   p_cons 2.342115e-01   p_joint 1.895902e-02

Joint ci ratio: 3.613042e-02	ci left: 1.829551e-02	ci right 1.897029e-02	k: 11551	n:620000
Cons ci ratio: 9.004544e-03	ci left: 2.330561e-01	ci right 2.351657e-01	k: 145148	n:620000
KS ci ratio: 1.274203e-01	ci left: 1.427057e-03	ci right 1.622810e-03	k: 944	n:620000
VEGFB   620000 perm   253 sec   (2449 perm/sec)   p_kst 1.522581e-03   p_cons 2.341097e-01   p_joint 1.863065e-02

Joint ci ratio: 3.548430e-02	ci left: 1.866587e-02	ci right 1.934174e-02	k: 11971	n:630000
Cons ci ratio: 8.932047e-03	ci left: 2.330945e-01	ci right 2.351874e-01	k: 147508	n:630000
KS ci ratio: 1.266192e-01	ci left: 1.422847e-03	ci right 1.616704e-03	k: 956	n:630000
VEGFB   630000 perm   260 sec   (2426 perm/sec)   p_kst 1.517460e-03   p_cons 2.341397e-01   p_joint 1.900159e-02

Joint ci ratio: 3.520160e-02	ci left: 1.867311e-02	ci right 1.934375e-02	k: 12164	n:640000
Cons ci ratio: 8.862200e-03	ci left: 2.330942e-01	ci right 2.351707e-01	k: 149844	n:640000
KS ci ratio: 1.255092e-01	ci left: 1.426340e-03	ci right 1.618842e-03	k: 973	n:640000
VEGFB   640000 perm   266 sec   (2403 perm/sec)   p_kst 1.520312e-03   p_cons 2.341313e-01   p_joint 1.900625e-02

Joint ci ratio: 3.521570e-02	ci left: 1.837664e-02	ci right 1.903689e-02	k: 12158	n:650000
Cons ci ratio: 8.790949e-03	ci left: 2.332170e-01	ci right 2.352777e-01	k: 152260	n:650000
KS ci ratio: 1.247434e-01	ci left: 1.422280e-03	ci right 1.612976e-03	k: 985	n:650000
VEGFB   650000 perm   273 sec   (2380 perm/sec)   p_kst 1.515385e-03   p_cons 2.342462e-01   p_joint 1.870462e-02

Joint ci ratio: 3.495232e-02	ci left: 1.837454e-02	ci right 1.902969e-02	k: 12342	n:660000
Cons ci ratio: 8.726067e-03	ci left: 2.331439e-01	ci right 2.351887e-01	k: 154549	n:660000
KS ci ratio: 1.237434e-01	ci left: 1.424219e-03	ci right 1.613533e-03	k: 1001	n:660000
VEGFB   660000 perm   280 sec   (2359 perm/sec)   p_kst 1.516667e-03   p_cons 2.341652e-01   p_joint 1.870000e-02

Joint ci ratio: 3.440756e-02	ci left: 1.867739e-02	ci right 1.933275e-02	k: 12732	n:670000
Cons ci ratio: 8.662565e-03	ci left: 2.330746e-01	ci right 2.351038e-01	k: 156839	n:670000
KS ci ratio: 1.223464e-01	ci left: 1.436235e-03	ci right 1.624834e-03	k: 1024	n:670000
VEGFB   670000 perm   287 sec   (2338 perm/sec)   p_kst 1.528358e-03   p_cons 2.340881e-01   p_joint 1.900299e-02

Joint ci ratio: 3.414696e-02	ci left: 1.868703e-02	ci right 1.933766e-02	k: 12927	n:680000
Cons ci ratio: 8.598736e-03	ci left: 2.330778e-01	ci right 2.350921e-01	k: 159177	n:680000
KS ci ratio: 1.215781e-01	ci left: 1.433648e-03	ci right 1.620640e-03	k: 1037	n:680000
VEGFB   680000 perm   293 sec   (2318 perm/sec)   p_kst 1.525000e-03   p_cons 2.340838e-01   p_joint 1.901029e-02

Joint ci ratio: 3.387245e-02	ci left: 1.871797e-02	ci right 1.936434e-02	k: 13137	n:690000
Cons ci ratio: 8.537885e-03	ci left: 2.330145e-01	ci right 2.350139e-01	k: 161469	n:690000
KS ci ratio: 1.207091e-01	ci left: 1.433951e-03	ci right 1.619550e-03	k: 1052	n:690000
VEGFB   690000 perm   300 sec   (2296 perm/sec)   p_kst 1.524638e-03   p_cons 2.340130e-01   p_joint 1.903913e-02

Joint ci ratio: 3.295351e-02	ci left: 1.948767e-02	ci right 2.014202e-02	k: 13869	n:700000
Cons ci ratio: 8.477091e-03	ci left: 2.330043e-01	ci right 2.349893e-01	k: 163797	n:700000
KS ci ratio: 1.196902e-01	ci left: 1.438407e-03	ci right 1.622900e-03	k: 1070	n:700000
VEGFB   700000 perm   308 sec   (2276 perm/sec)   p_kst 1.528571e-03   p_cons 2.339957e-01   p_joint 1.981286e-02

Joint ci ratio: 3.273148e-02	ci left: 1.947721e-02	ci right 2.012672e-02	k: 14058	n:710000
Cons ci ratio: 8.418537e-03	ci left: 2.329537e-01	ci right 2.349245e-01	k: 166096	n:710000
KS ci ratio: 1.190806e-01	ci left: 1.433178e-03	ci right 1.615998e-03	k: 1081	n:710000
VEGFB   710000 perm   315 sec   (2256 perm/sec)   p_kst 1.522535e-03   p_cons 2.339380e-01   p_joint 1.980000e-02

Joint ci ratio: 3.250223e-02	ci left: 1.948083e-02	ci right 2.012582e-02	k: 14257	n:720000
Cons ci ratio: 8.360175e-03	ci left: 2.329476e-01	ci right 2.349046e-01	k: 168426	n:720000
KS ci ratio: 1.175680e-01	ci left: 1.451011e-03	ci right 1.633592e-03	k: 1109	n:720000
VEGFB   720000 perm   322 sec   (2237 perm/sec)   p_kst 1.540278e-03   p_cons 2.339250e-01   p_joint 1.980139e-02

Joint ci ratio: 3.228686e-02	ci left: 1.947349e-02	ci right 2.011389e-02	k: 14448	n:730000
Cons ci ratio: 8.300757e-03	ci left: 2.330387e-01	ci right 2.349825e-01	k: 170827	n:730000
KS ci ratio: 1.167297e-01	ci left: 1.452410e-03	ci right 1.633774e-03	k: 1125	n:730000
VEGFB   730000 perm   330 sec   (2215 perm/sec)   p_kst 1.541096e-03   p_cons 2.340096e-01   p_joint 1.979178e-02

Joint ci ratio: 3.206565e-02	ci left: 1.947843e-02	ci right 2.011453e-02	k: 14648	n:740000
Cons ci ratio: 8.245789e-03	ci left: 2.329885e-01	ci right 2.349190e-01	k: 173125	n:740000
KS ci ratio: 1.160618e-01	ci left: 1.449839e-03	ci right 1.629775e-03	k: 1138	n:740000
VEGFB   740000 perm   337 sec   (2196 perm/sec)   p_kst 1.537838e-03   p_cons 2.339527e-01   p_joint 1.979459e-02

Joint ci ratio: 3.212817e-02	ci left: 1.914989e-02	ci right 1.977650e-02	k: 14596	n:750000
Cons ci ratio: 8.191594e-03	ci left: 2.329530e-01	ci right 2.348704e-01	k: 175433	n:750000
KS ci ratio: 1.149564e-01	ci left: 1.458994e-03	ci right 1.638225e-03	k: 1160	n:750000
VEGFB   750000 perm   344 sec   (2178 perm/sec)   p_kst 1.546667e-03   p_cons 2.339107e-01   p_joint 1.946133e-02

Joint ci ratio: 3.259648e-02	ci left: 1.836921e-02	ci right 1.897920e-02	k: 14191	n:760000
Cons ci ratio: 8.137109e-03	ci left: 2.329776e-01	ci right 2.348824e-01	k: 177786	n:760000
KS ci ratio: 1.139786e-01	ci left: 1.465359e-03	ci right 1.643738e-03	k: 1180	n:760000
VEGFB   760000 perm   352 sec   (2160 perm/sec)   p_kst 1.552632e-03   p_cons 2.339289e-01   p_joint 1.867237e-02

Joint ci ratio: 3.173222e-02	ci left: 1.912530e-02	ci right 1.974325e-02	k: 14963	n:770000
Cons ci ratio: 8.085776e-03	ci left: 2.329095e-01	ci right 2.348016e-01	k: 180068	n:770000
KS ci ratio: 1.129311e-01	ci left: 1.474090e-03	ci right 1.651772e-03	k: 1202	n:770000
VEGFB   770000 perm   359 sec   (2143 perm/sec)   p_kst 1.561039e-03   p_cons 2.338545e-01   p_joint 1.943247e-02

Joint ci ratio: 3.153381e-02	ci left: 1.912050e-02	ci right 1.973436e-02	k: 15152	n:780000
Cons ci ratio: 8.033506e-03	ci left: 2.329276e-01	ci right 2.348077e-01	k: 182416	n:780000
KS ci ratio: 1.123260e-01	ci left: 1.471388e-03	ci right 1.647731e-03	k: 1215	n:780000
VEGFB   780000 perm   367 sec   (2125 perm/sec)   p_kst 1.557692e-03   p_cons 2.338667e-01   p_joint 1.942564e-02

Joint ci ratio: 3.200830e-02	ci left: 1.833334e-02	ci right 1.893095e-02	k: 14718	n:790000
Cons ci ratio: 7.983759e-03	ci left: 2.328771e-01	ci right 2.347451e-01	k: 184710	n:790000
KS ci ratio: 1.116850e-01	ci left: 1.469988e-03	ci right 1.645092e-03	k: 1229	n:790000
VEGFB   790000 perm   375 sec   (2108 perm/sec)   p_kst 1.555696e-03   p_cons 2.338101e-01   p_joint 1.863038e-02

Joint ci ratio: 3.182429e-02	ci left: 1.831622e-02	ci right 1.890977e-02	k: 14889	n:800000
Cons ci ratio: 7.933873e-03	ci left: 2.328754e-01	ci right 2.347316e-01	k: 187042	n:800000
KS ci ratio: 1.110102e-01	ci left: 1.469841e-03	ci right 1.643800e-03	k: 1244	n:800000
VEGFB   800000 perm   383 sec   (2091 perm/sec)   p_kst 1.555000e-03   p_cons 2.338025e-01   p_joint 1.861125e-02

Joint ci ratio: 3.164876e-02	ci left: 1.829340e-02	ci right 1.888289e-02	k: 15055	n:810000
Cons ci ratio: 7.884938e-03	ci left: 2.328725e-01	ci right 2.347171e-01	k: 189373	n:810000
KS ci ratio: 1.104353e-01	ci left: 1.467299e-03	ci right 1.640000e-03	k: 1257	n:810000
VEGFB   810000 perm   390 sec   (2075 perm/sec)   p_kst 1.551852e-03   p_cons 2.337938e-01   p_joint 1.858642e-02

Joint ci ratio: 3.146874e-02	ci left: 1.827962e-02	ci right 1.886525e-02	k: 15228	n:820000
Cons ci ratio: 7.836843e-03	ci left: 2.328721e-01	ci right 2.347054e-01	k: 191706	n:820000
KS ci ratio: 1.096104e-01	ci left: 1.471939e-03	ci right 1.643808e-03	k: 1276	n:820000
VEGFB   820000 perm   398 sec   (2058 perm/sec)   p_kst 1.556098e-03   p_cons 2.337878e-01   p_joint 1.857073e-02

Joint ci ratio: 3.126591e-02	ci left: 1.829607e-02	ci right 1.887838e-02	k: 15426	n:830000
Cons ci ratio: 7.789121e-03	ci left: 2.328946e-01	ci right 2.347169e-01	k: 194058	n:830000
KS ci ratio: 1.090993e-01	ci left: 1.468267e-03	ci right 1.638857e-03	k: 1288	n:830000
VEGFB   830000 perm   407 sec   (2042 perm/sec)   p_kst 1.551807e-03   p_cons 2.338048e-01   p_joint 1.858554e-02

Joint ci ratio: 3.109433e-02	ci left: 1.828024e-02	ci right 1.885880e-02	k: 15597	n:840000
Cons ci ratio: 7.743289e-03	ci left: 2.328691e-01	ci right 2.346804e-01	k: 196370	n:840000
KS ci ratio: 1.084284e-01	ci left: 1.469317e-03	ci right 1.638912e-03	k: 1304	n:840000
VEGFB   840000 perm   415 sec   (2026 perm/sec)   p_kst 1.552381e-03   p_cons 2.337738e-01   p_joint 1.856786e-02

Joint ci ratio: 3.091556e-02	ci left: 1.827647e-02	ci right 1.885152e-02	k: 15778	n:850000
Cons ci ratio: 7.700532e-03	ci left: 2.327384e-01	ci right 2.345387e-01	k: 198592	n:850000
KS ci ratio: 1.075254e-01	ci left: 1.477215e-03	ci right 1.646211e-03	k: 1326	n:850000
VEGFB   850000 perm   423 sec   (2010 perm/sec)   p_kst 1.560000e-03   p_cons 2.336376e-01   p_joint 1.856235e-02

Joint ci ratio: 3.007280e-02	ci left: 1.908299e-02	ci right 1.966677e-02	k: 16661	n:860000
Cons ci ratio: 7.655566e-03	ci left: 2.327467e-01	ci right 2.345365e-01	k: 200931	n:860000
KS ci ratio: 1.070027e-01	ci left: 1.474748e-03	ci right 1.642591e-03	k: 1339	n:860000
VEGFB   860000 perm   431 sec   (1995 perm/sec)   p_kst 1.556977e-03   p_cons 2.336407e-01   p_joint 1.937326e-02

Joint ci ratio: 3.054011e-02	ci left: 1.830116e-02	ci right 1.886987e-02	k: 16168	n:870000
Cons ci ratio: 7.611965e-03	ci left: 2.327273e-01	ci right 2.345067e-01	k: 203246	n:870000
KS ci ratio: 1.064876e-01	ci left: 1.472341e-03	ci right 1.639052e-03	k: 1352	n:870000
VEGFB   870000 perm   439 sec   (1980 perm/sec)   p_kst 1.554023e-03   p_cons 2.336161e-01   p_joint 1.858391e-02

Joint ci ratio: 3.035555e-02	ci left: 1.831535e-02	ci right 1.888101e-02	k: 16365	n:880000
Cons ci ratio: 7.568691e-03	ci left: 2.327276e-01	ci right 2.344969e-01	k: 205578	n:880000
KS ci ratio: 1.059410e-01	ci left: 1.471096e-03	ci right 1.636758e-03	k: 1366	n:880000
VEGFB   880000 perm   448 sec   (1964 perm/sec)   p_kst 1.552273e-03   p_cons 2.336114e-01   p_joint 1.859659e-02

Joint ci ratio: 3.017986e-02	ci left: 1.832254e-02	ci right 1.888509e-02	k: 16556	n:890000
Cons ci ratio: 7.525133e-03	ci left: 2.327762e-01	ci right 2.345356e-01	k: 207953	n:890000
KS ci ratio: 1.054027e-01	ci left: 1.469881e-03	ci right 1.634514e-03	k: 1380	n:890000
VEGFB   890000 perm   457 sec   (1949 perm/sec)   p_kst 1.550562e-03   p_cons 2.336551e-01   p_joint 1.860225e-02

Joint ci ratio: 3.000811e-02	ci left: 1.832848e-02	ci right 1.888796e-02	k: 16746	n:900000
Cons ci ratio: 7.483269e-03	ci left: 2.327783e-01	ci right 2.345279e-01	k: 210287	n:900000
KS ci ratio: 1.048349e-01	ci left: 1.469778e-03	ci right 1.633457e-03	k: 1395	n:900000
VEGFB   900000 perm   465 sec   (1935 perm/sec)   p_kst 1.550000e-03   p_cons 2.336522e-01   p_joint 1.860667e-02

Joint ci ratio: 2.922796e-02	ci left: 1.910014e-02	ci right 1.966776e-02	k: 17638	n:910000
Cons ci ratio: 7.442279e-03	ci left: 2.327716e-01	ci right 2.345115e-01	k: 212613	n:910000
KS ci ratio: 1.042023e-01	ci left: 1.471819e-03	ci right 1.634676e-03	k: 1412	n:910000
VEGFB   910000 perm   474 sec   (1921 perm/sec)   p_kst 1.551648e-03   p_cons 2.336407e-01   p_joint 1.938242e-02

Joint ci ratio: 2.905193e-02	ci left: 1.912345e-02	ci right 1.968828e-02	k: 17852	n:920000
Cons ci ratio: 7.401035e-03	ci left: 2.328095e-01	ci right 2.345400e-01	k: 214980	n:920000
KS ci ratio: 1.038358e-01	ci left: 1.466408e-03	ci right 1.628061e-03	k: 1422	n:920000
VEGFB   920000 perm   482 sec   (1907 perm/sec)   p_kst 1.545652e-03   p_cons 2.336739e-01   p_joint 1.940435e-02

Joint ci ratio: 2.952817e-02	ci left: 1.832317e-02	ci right 1.887338e-02	k: 17295	n:930000
Cons ci ratio: 7.361728e-03	ci left: 2.327855e-01	ci right 2.345065e-01	k: 217290	n:930000
KS ci ratio: 1.031493e-01	ci left: 1.470542e-03	ci right 1.631513e-03	k: 1441	n:930000
VEGFB   930000 perm   491 sec   (1893 perm/sec)   p_kst 1.549462e-03   p_cons 2.336452e-01   p_joint 1.859677e-02

Joint ci ratio: 2.937580e-02	ci left: 1.831832e-02	ci right 1.886550e-02	k: 17475	n:940000
Cons ci ratio: 7.322801e-03	ci left: 2.327736e-01	ci right 2.344855e-01	k: 219611	n:940000
KS ci ratio: 1.027938e-01	ci left: 1.465262e-03	ci right 1.625069e-03	k: 1451	n:940000
VEGFB   940000 perm   500 sec   (1880 perm/sec)   p_kst 1.543617e-03   p_cons 2.336287e-01   p_joint 1.859043e-02

Joint ci ratio: 2.922746e-02	ci left: 1.831149e-02	ci right 1.885566e-02	k: 17653	n:950000
Cons ci ratio: 7.284293e-03	ci left: 2.327715e-01	ci right 2.344743e-01	k: 221941	n:950000
KS ci ratio: 1.023019e-01	ci left: 1.464197e-03	ci right 1.623078e-03	k: 1465	n:950000
VEGFB   950000 perm   509 sec   (1866 perm/sec)   p_kst 1.542105e-03   p_cons 2.336221e-01   p_joint 1.858211e-02

Joint ci ratio: 2.907801e-02	ci left: 1.830895e-02	ci right 1.885021e-02	k: 17835	n:960000
Cons ci ratio: 7.247208e-03	ci left: 2.327289e-01	ci right 2.344227e-01	k: 224232	n:960000
KS ci ratio: 1.016794e-01	ci left: 1.467216e-03	ci right 1.625399e-03	k: 1483	n:960000
VEGFB   960000 perm   518 sec   (1853 perm/sec)   p_kst 1.544792e-03   p_cons 2.335750e-01   p_joint 1.857813e-02

Joint ci ratio: 2.832725e-02	ci left: 1.908549e-02	ci right 1.963491e-02	k: 18778	n:970000
Cons ci ratio: 7.211162e-03	ci left: 2.326635e-01	ci right 2.343484e-01	k: 226500	n:970000
KS ci ratio: 1.013049e-01	ci left: 1.463143e-03	ci right 1.620270e-03	k: 1494	n:970000
VEGFB   970000 perm   527 sec   (1840 perm/sec)   p_kst 1.540206e-03   p_cons 2.335052e-01   p_joint 1.935876e-02

Joint ci ratio: 2.819114e-02	ci left: 1.907514e-02	ci right 1.962158e-02	k: 18960	n:980000
Cons ci ratio: 7.174134e-03	ci left: 2.326749e-01	ci right 2.343512e-01	k: 228842	n:980000
KS ci ratio: 1.008339e-01	ci left: 1.462137e-03	ci right 1.618384e-03	k: 1508	n:980000
VEGFB   980000 perm   537 sec   (1826 perm/sec)   p_kst 1.538776e-03   p_cons 2.335122e-01   p_joint 1.934694e-02

Joint ci ratio: 2.845127e-02	ci left: 1.854640e-02	ci right 1.908268e-02	k: 18625	n:990000
Cons ci ratio: 7.136906e-03	ci left: 2.327244e-01	ci right 2.343923e-01	k: 231222	n:990000
KS ci ratio: 1.003035e-01	ci left: 1.463123e-03	ci right 1.618604e-03	k: 1524	n:990000
VEGFB   990000 perm   546 sec   (1814 perm/sec)   p_kst 1.539394e-03   p_cons 2.335576e-01   p_joint 1.881313e-02

Joint ci ratio: 2.787914e-02	ci left: 1.911666e-02	ci right 1.965813e-02	k: 19386	n:1000000
Cons ci ratio: 7.101599e-03	ci left: 2.327051e-01	ci right 2.343645e-01	k: 233534	n:1000000
KS ci ratio: 9.965196e-02	ci left: 1.467992e-03	ci right 1.622918e-03	k: 1544	n:1000000
VEGFB   1000000 perm   555 sec   (1801 perm/sec)   p_kst 1.544000e-03   p_cons 2.335340e-01   p_joint 1.938600e-02

Outputting figure to mutsig2_images.part000000000188/VEGFB.2_648_1000000_0.001544_0.23353_0.019386.png
                gene_name: VEGFB
               theta_stop: 0.100 
                    nperm: 1000000 
                     p_ks: 0.0015 
        ci_ks_bounds_left: 0.0015 
       ci_ks_bounds_right: 0.0016 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000188
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 188 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1704>
Subject: Job 9894202: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1704>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000189> was used as the working directory.
Started at Sat Oct  6 00:35:26 2012
Results reported at Sat Oct  6 01:10:44 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000189.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000189.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 189  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000189.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   2148.70 sec.
    Max Memory :      3609 MB
    Max Swap   :      5944 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
189
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 189
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 189: processing genes 16949 - 17038
Calculating significance of each gene.
Using projection method.
16949	VENTX	6.686309e-01
16950	VEPH1	3.208096e-02
16951	VEZF1	1
16952	VEZT	9.767264e-01
16953	VGF	8.319463e-01
16954	VGLL1	9.145950e-03
16955	VGLL2	1
16956	VGLL3	7.193405e-01
16957	VGLL4	3.087968e-01
16958	VHL	6.808199e-01
16959	VHLL	1
16960	VIL1	6.076176e-01
16961	VILL	2.639241e-01
16962	VIM	2.892711e-01
16963	VIP	1
16964	VIPAR	3.289037e-01
16965	VIPR1	2.647017e-01
16966	VIPR2	3.337471e-01
16967	VIT	3.171705e-01
16968	VKORC1	1
16969	VKORC1L1	4.319234e-01
In gene VLDLR the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 2612    n = 1	mu =   4.60e-07
16970	VLDLR	3.081472e-01
16971	VMA21	5.213120e-02
16972	VMAC	1
In gene VMO1 the following bins exceed PROBCAP:
    COAD-AA-A004	categ 6	N = 631     n = 1	mu =   1.64e-07
16973	VMO1	7.764669e-02
16974	VN1R1	4.409207e-02
16975	VN1R2	1.576097e-02
16976	VN1R4	7.465031e-01
16977	VN1R5	6.783481e-01
16978	VNN1	4.170866e-02
16979	VNN2	6.755173e-01
16980	VOPP1	4.355831e-01
16981	VPRBP	7.490502e-01
16982	VPREB1	5.499573e-01
16983	VPREB3	2.966282e-01
16984	VPS11	3.641258e-01
16985	VPS13A	1.529837e-01
16986	VPS13B	5.810187e-02
16987	VPS13C	2.601983e-01
16988	VPS13D	8.945022e-01
16989	VPS16	9.276136e-01
16990	VPS18	9.476172e-01
16991	VPS24	3.538516e-01
16992	VPS25	4.574454e-01
16993	VPS26A	7.875800e-01
16994	VPS26B	2.068652e-01
16995	VPS28	1
16996	VPS29	1
16997	VPS33A	5.046364e-01
16998	VPS33B	7.993556e-01
16999	VPS35	6.757213e-01
17000/18030 17000	VPS36	4.394285e-02
17001	VPS37A	1
17002	VPS37B	4.328297e-01
17003	VPS37C	3.554374e-01
17004	VPS37D	1
17005	VPS39	9.332112e-01
17006	VPS41	5.849677e-01
17007	VPS45	6.718238e-01
17008	VPS4A	7.706137e-01
17009	VPS4B	6.053253e-01
17010	VPS52	1.412642e-01
17011	VPS53	5.448843e-01
17012	VPS54	5.914784e-01
17013	VPS72	8.820914e-01
17014	VPS8	5.666753e-01
17015	VRK1	1.891134e-01
17016	VRK2	1.468507e-01
17017	VRK3	1.116039e-01
17018	VSIG1	6.773450e-01
17019	VSIG10	8.720791e-01
17020	VSIG2	6.096648e-01
17021	VSIG4	3.732642e-01
17022	VSIG8	1.859801e-01
17023	VSNL1	1
17024	VSTM1	7.535884e-01
17025	VSTM2A	4.642991e-01
17026	VSTM2L	1
17027	VSX1	2.514716e-01
17028	VSX2	3.869875e-01
17029	VTA1	6.549294e-01
17030	VTCN1	1.462822e-02
17031	VTI1A	5.367521e-01
17032	VTI1B	7.147080e-01
17033	VTN	8.318465e-02
17034	VWA2	5.564517e-01
17035	VWA3A	6.955984e-01
17036	VWA3B	9.381948e-01
17037	VWA5A	3.074807e-02
17038	VWC2	4.716083e-01
Done

Running MutSig 2:
Scatter job 189: processing genes 16949 - 17038
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
VPS13B
Processing conservation and coverage...
79% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.940915e-02	ci left: 3.766417e-01	ci right 3.958246e-01	k: 3862	n:10000
Cons ci ratio: 1.415757e-01	ci left: 6.613851e-02	ci right 7.631298e-02	k: 711	n:10000
KS ci ratio: 1.823030e-02	ci left: 8.145627e-01	ci right 8.296492e-01	k: 8222	n:10000
VPS13B   10000 perm   3 sec   (2859 perm/sec)   p_kst 8.222000e-01   p_cons 7.110000e-02   p_joint 3.862000e-01

Joint ci ratio: 3.772024e-02	ci left: 3.439842e-01	ci right 3.572593e-01	k: 7012	n:20000
Cons ci ratio: 1.008760e-01	ci left: 6.664808e-02	ci right 7.377748e-02	k: 1403	n:20000
KS ci ratio: 1.283077e-02	ci left: 8.181950e-01	ci right 8.288108e-01	k: 16471	n:20000
VPS13B   20000 perm   9 sec   (2113 perm/sec)   p_kst 8.235500e-01   p_cons 7.015000e-02   p_joint 3.506000e-01

Joint ci ratio: 3.033844e-02	ci left: 3.520741e-01	ci right 3.629535e-01	k: 10725	n:30000
Cons ci ratio: 7.819157e-02	ci left: 7.426955e-02	ci right 8.034595e-02	k: 2318	n:30000
KS ci ratio: 1.044791e-02	ci left: 8.199792e-01	ci right 8.286245e-01	k: 24730	n:30000
VPS13B   30000 perm   13 sec   (2226 perm/sec)   p_kst 8.243333e-01   p_cons 7.726667e-02   p_joint 3.575000e-01

Outputting figure to mutsig2_images.part000000000189/VPS13B.29_12507_30000_0.82433_0.077267_0.3575.png
                gene_name: VPS13B
               theta_stop: 0.078 
                    nperm: 30000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.077 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 2 percent done.
VPS13A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.007111e-02	ci left: 7.842146e-01	ci right 8.002148e-01	k: 7923	n:10000
Cons ci ratio: 4.171224e-02	ci left: 4.590794e-01	ci right 4.787387e-01	k: 4689	n:10000
KS ci ratio: 2.589946e-02	ci left: 6.869792e-01	ci right 7.051065e-01	k: 6961	n:10000
VPS13A   10000 perm   3 sec   (3332 perm/sec)   p_kst 6.961000e-01   p_cons 4.689000e-01   p_joint 7.923000e-01

Outputting figure to mutsig2_images.part000000000189/VPS13A.26_9941_10000_0.6961_0.4689_0.7923.png
                gene_name: VPS13A
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 4 percent done.
VPS13C
Processing conservation and coverage...
85% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.536014e-02	ci left: 5.414881e-01	ci right 5.610820e-01	k: 5513	n:10000
Cons ci ratio: 7.916568e-02	ci left: 1.890467e-01	ci right 2.047302e-01	k: 1968	n:10000
KS ci ratio: 1.331581e-02	ci left: 8.904663e-01	ci right 9.025016e-01	k: 8966	n:10000
VPS13C   10000 perm   3 sec   (3074 perm/sec)   p_kst 8.966000e-01   p_cons 1.968000e-01   p_joint 5.513000e-01

Outputting figure to mutsig2_images.part000000000189/VPS13C.22_11630_10000_0.8966_0.1968_0.5513.png
                gene_name: VPS13C
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 5 percent done.
VPS13D
Processing conservation and coverage...
74% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.304723e-02	ci left: 3.437266e-01	ci right 3.625590e-01	k: 3531	n:10000
Cons ci ratio: 5.555591e-03	ci left: 9.774889e-01	ci right 9.830263e-01	k: 9804	n:10000
KS ci ratio: 7.098191e-02	ci left: 2.253355e-01	ci right 2.420199e-01	k: 2336	n:10000
VPS13D   10000 perm   3 sec   (2958 perm/sec)   p_kst 2.336000e-01   p_cons 9.804000e-01   p_joint 3.531000e-01

Outputting figure to mutsig2_images.part000000000189/VPS13D.17_13443_10000_0.2336_0.9804_0.3531.png
                gene_name: VPS13D
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 7 percent done.
VPS8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.673316e-02	ci left: 8.386731e-01	ci right 8.529249e-01	k: 8459	n:10000
KS ci ratio: 1.918346e-02	ci left: 7.989230e-01	ci right 8.144979e-01	k: 8068	n:10000
VPS8   10000 perm   2 sec   (4905 perm/sec)   p_kst 8.068000e-01   p_cons 8.459000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VPS8.10_4471_10000_0.8068_0.8459_1.png
                gene_name: VPS8
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 9 percent done.
VIT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.333011e-02	ci left: 2.681458e-01	ci right 2.857843e-01	k: 2769	n:10000
Cons ci ratio: 1.315918e-01	ci left: 7.611299e-02	ci right 8.693227e-02	k: 814	n:10000
KS ci ratio: 2.559385e-02	ci left: 6.920201e-01	ci right 7.100626e-01	k: 7011	n:10000
VIT   10000 perm   2 sec   (5377 perm/sec)   p_kst 7.011000e-01   p_cons 8.140000e-02   p_joint 2.769000e-01

Joint ci ratio: 4.545613e-02	ci left: 2.648486e-01	ci right 2.772180e-01	k: 5420	n:20000
Cons ci ratio: 9.252709e-02	ci left: 7.852716e-02	ci right 8.619478e-02	k: 1646	n:20000
KS ci ratio: 1.855260e-02	ci left: 6.841413e-01	ci right 6.970032e-01	k: 13812	n:20000
VIT   20000 perm   4 sec   (4823 perm/sec)   p_kst 6.906000e-01   p_cons 8.230000e-02   p_joint 2.710000e-01

Outputting figure to mutsig2_images.part000000000189/VIT.8_2267_20000_0.6906_0.0823_0.271.png
                gene_name: VIT
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.082 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 11 percent done.
VWA3B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.023915e-02	ci left: 9.312316e-01	ci right 9.409125e-01	k: 9362	n:10000
Cons ci ratio: 2.254729e-02	ci left: 7.428065e-01	ci right 7.598468e-01	k: 7514	n:10000
KS ci ratio: 2.803301e-02	ci left: 6.522301e-01	ci right 6.708757e-01	k: 6616	n:10000
VWA3B   10000 perm   2 sec   (4822 perm/sec)   p_kst 6.616000e-01   p_cons 7.514000e-01   p_joint 9.362000e-01

Outputting figure to mutsig2_images.part000000000189/VWA3B.8_3993_10000_0.6616_0.7514_0.9362.png
                gene_name: VWA3B
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 12 percent done.
VWA5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.359049e-01	ci left: 7.155808e-02	ci right 8.209001e-02	k: 767	n:10000
Cons ci ratio: 2.649463e-02	ci left: 6.772033e-01	ci right 6.954880e-01	k: 6864	n:10000
KS ci ratio: 2.225082e-01	ci left: 2.674401e-02	ci right 3.353336e-02	k: 300	n:10000
VWA5A   10000 perm   2 sec   (4871 perm/sec)   p_kst 3.000000e-02   p_cons 6.864000e-01   p_joint 7.670000e-02

Joint ci ratio: 8.525382e-02	ci left: 9.150982e-02	ci right 9.970819e-02	k: 1911	n:20000
Cons ci ratio: 1.894648e-02	ci left: 6.750424e-01	ci right 6.880048e-01	k: 13631	n:20000
KS ci ratio: 1.606734e-01	ci left: 2.657390e-02	ci right 3.126439e-02	k: 577	n:20000
VWA5A   20000 perm   5 sec   (4417 perm/sec)   p_kst 2.885000e-02   p_cons 6.815500e-01   p_joint 9.555000e-02

Joint ci ratio: 8.116973e-02	ci left: 6.919799e-02	ci right 7.508520e-02	k: 2163	n:30000
Cons ci ratio: 1.563109e-02	ci left: 6.717083e-01	ci right 6.823241e-01	k: 20311	n:30000
KS ci ratio: 1.248785e-01	ci left: 2.981089e-02	ci right 3.381379e-02	k: 953	n:30000
VWA5A   30000 perm   7 sec   (4236 perm/sec)   p_kst 3.176667e-02   p_cons 6.770333e-01   p_joint 7.210000e-02

Joint ci ratio: 7.646580e-02	ci left: 5.928779e-02	ci right 6.402609e-02	k: 2465	n:40000
Cons ci ratio: 1.332801e-02	ci left: 6.792174e-01	ci right 6.883559e-01	k: 27352	n:40000
KS ci ratio: 1.102704e-01	ci left: 2.893381e-02	ci right 3.233478e-02	k: 1224	n:40000
VWA5A   40000 perm   10 sec   (4115 perm/sec)   p_kst 3.060000e-02   p_cons 6.838000e-01   p_joint 6.162500e-02

Joint ci ratio: 7.255448e-02	ci left: 5.315518e-02	ci right 5.717666e-02	k: 2757	n:50000
Cons ci ratio: 1.229419e-02	ci left: 6.661797e-01	ci right 6.744405e-01	k: 33516	n:50000
KS ci ratio: 9.768700e-02	ci left: 2.967384e-02	ci right 3.274091e-02	k: 1559	n:50000
VWA5A   50000 perm   12 sec   (4029 perm/sec)   p_kst 3.118000e-02   p_cons 6.703200e-01   p_joint 5.514000e-02

Outputting figure to mutsig2_images.part000000000189/VWA5A.8_2433_50000_0.03118_0.67032_0.05514.png
                gene_name: VWA5A
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 14 percent done.
VEPH1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.458791e-02	ci left: 5.524094e-01	ci right 5.719544e-01	k: 5622	n:10000
Cons ci ratio: 2.754004e-02	ci left: 6.601821e-01	ci right 6.787191e-01	k: 6695	n:10000
KS ci ratio: 5.966541e-02	ci left: 2.924153e-01	ci right 3.105005e-01	k: 3014	n:10000
VEPH1   10000 perm   2 sec   (5657 perm/sec)   p_kst 3.014000e-01   p_cons 6.695000e-01   p_joint 5.622000e-01

Outputting figure to mutsig2_images.part000000000189/VEPH1.7_2676_10000_0.3014_0.6695_0.5622.png
                gene_name: VEPH1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 16 percent done.
VN1R2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.853536e-02	ci left: 6.441804e-01	ci right 6.629301e-01	k: 6536	n:10000
Cons ci ratio: 5.323349e-02	ci left: 3.421367e-01	ci right 3.609498e-01	k: 3515	n:10000
KS ci ratio: 3.073802e-02	ci left: 6.095991e-01	ci right 6.287314e-01	k: 6192	n:10000
VN1R2   10000 perm   2 sec   (5766 perm/sec)   p_kst 6.192000e-01   p_cons 3.515000e-01   p_joint 6.536000e-01

Outputting figure to mutsig2_images.part000000000189/VN1R2.6_1192_10000_0.6192_0.3515_0.6536.png
                gene_name: VN1R2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 18 percent done.
VNN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.639973e-02	ci left: 1.632741e-01	ci right 1.781182e-01	k: 1706	n:10000
Cons ci ratio: 5.386991e-02	ci left: 3.367719e-01	ci right 3.555178e-01	k: 3461	n:10000
KS ci ratio: 9.128017e-02	ci left: 1.485467e-01	ci right 1.628545e-01	k: 1556	n:10000
VNN1   10000 perm   2 sec   (5635 perm/sec)   p_kst 1.556000e-01   p_cons 3.461000e-01   p_joint 1.706000e-01

Outputting figure to mutsig2_images.part000000000189/VNN1.6_1570_10000_0.1556_0.3461_0.1706.png
                gene_name: VNN1
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 20 percent done.
VPRBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.963916e-02	ci left: 3.744525e-01	ci right 3.936151e-01	k: 3840	n:10000
Cons ci ratio: 4.376126e-02	ci left: 4.353266e-01	ci right 4.549054e-01	k: 4451	n:10000
KS ci ratio: 6.331431e-02	ci left: 2.682448e-01	ci right 2.858852e-01	k: 2770	n:10000
VPRBP   10000 perm   2 sec   (4681 perm/sec)   p_kst 2.770000e-01   p_cons 4.451000e-01   p_joint 3.840000e-01

Outputting figure to mutsig2_images.part000000000189/VPRBP.6_4453_10000_0.277_0.4451_0.384.png
                gene_name: VPRBP
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 21 percent done.
VPS11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.432065e-01	ci left: 6.468834e-02	ci right 7.476406e-02	k: 696	n:10000
Cons ci ratio: 2.497253e-02	ci left: 7.023076e-01	ci right 7.201692e-01	k: 7113	n:10000
KS ci ratio: 2.067437e-01	ci left: 3.110398e-02	ci right 3.837033e-02	k: 346	n:10000
VPS11   10000 perm   2 sec   (4967 perm/sec)   p_kst 3.460000e-02   p_cons 7.113000e-01   p_joint 6.960000e-02

Joint ci ratio: 1.025756e-01	ci left: 6.454903e-02	ci right 7.157718e-02	k: 1360	n:20000
Cons ci ratio: 1.746108e-02	ci left: 7.095937e-01	ci right 7.221435e-01	k: 14318	n:20000
KS ci ratio: 1.436398e-01	ci left: 3.331605e-02	ci right 3.852000e-02	k: 717	n:20000
VPS11   20000 perm   4 sec   (4498 perm/sec)   p_kst 3.585000e-02   p_cons 7.159000e-01   p_joint 6.800000e-02

Joint ci ratio: 8.518353e-02	ci left: 6.311792e-02	ci right 6.876649e-02	k: 1977	n:30000
Cons ci ratio: 1.414609e-02	ci left: 7.139430e-01	ci right 7.241479e-01	k: 21572	n:30000
KS ci ratio: 1.160036e-01	ci left: 3.453584e-02	ci right 3.882115e-02	k: 1099	n:30000
VPS11   30000 perm   7 sec   (4313 perm/sec)   p_kst 3.663333e-02   p_cons 7.190667e-01   p_joint 6.590000e-02

Joint ci ratio: 6.271665e-02	ci left: 8.617768e-02	ci right 9.178216e-02	k: 3558	n:40000
Cons ci ratio: 1.225218e-02	ci left: 7.145919e-01	ci right 7.234263e-01	k: 28761	n:40000
KS ci ratio: 1.005217e-01	ci left: 3.478102e-02	ci right 3.848664e-02	k: 1464	n:40000
VPS11   40000 perm   10 sec   (4194 perm/sec)   p_kst 3.660000e-02   p_cons 7.190250e-01   p_joint 8.895000e-02

Joint ci ratio: 6.350901e-02	ci left: 6.854706e-02	ci right 7.306292e-02	k: 3539	n:50000
Cons ci ratio: 1.096155e-02	ci left: 7.149572e-01	ci right 7.228574e-01	k: 35946	n:50000
KS ci ratio: 8.926016e-02	ci left: 3.547980e-02	ci right 3.881421e-02	k: 1856	n:50000
VPS11   50000 perm   12 sec   (4100 perm/sec)   p_kst 3.712000e-02   p_cons 7.189200e-01   p_joint 7.078000e-02

Outputting figure to mutsig2_images.part000000000189/VPS11.6_2889_50000_0.03712_0.71892_0.07078.png
                gene_name: VPS11
               theta_stop: 0.089 
                    nperm: 50000 
                     p_ks: 0.037 
        ci_ks_bounds_left: 0.035 
       ci_ks_bounds_right: 0.039 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.071 
     ci_joint_bounds_left: 0.069 
    ci_joint_bounds_right: 0.073 

Current progress: 23 percent done.
VPS52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.449914e-02	ci left: 8.731632e-01	ci right 8.860148e-01	k: 8797	n:10000
Cons ci ratio: 3.468637e-02	ci left: 5.510064e-01	ci right 5.705582e-01	k: 5608	n:10000
KS ci ratio: 1.955787e-02	ci left: 7.927334e-01	ci right 8.084911e-01	k: 8007	n:10000
VPS52   10000 perm   2 sec   (5330 perm/sec)   p_kst 8.007000e-01   p_cons 5.608000e-01   p_joint 8.797000e-01

Outputting figure to mutsig2_images.part000000000189/VPS52.6_2252_10000_0.8007_0.5608_0.8797.png
                gene_name: VPS52
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.88 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.89 

Current progress: 25 percent done.
VPS54
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.576556e-02	ci left: 1.365853e-01	ci right 1.504231e-01	k: 1434	n:10000
Cons ci ratio: 2.558164e-02	ci left: 6.922218e-01	ci right 7.102608e-01	k: 7013	n:10000
KS ci ratio: 1.308071e-01	ci left: 7.698582e-02	ci right 8.785890e-02	k: 823	n:10000
VPS54   10000 perm   2 sec   (5007 perm/sec)   p_kst 8.230000e-02   p_cons 7.013000e-01   p_joint 1.434000e-01

Joint ci ratio: 6.675645e-02	ci left: 1.421190e-01	ci right 1.519839e-01	k: 2940	n:20000
Cons ci ratio: 1.816070e-02	ci left: 6.932432e-01	ci right 7.059987e-01	k: 13993	n:20000
KS ci ratio: 9.144234e-02	ci left: 8.028925e-02	ci right 8.803215e-02	k: 1682	n:20000
VPS54   20000 perm   4 sec   (4556 perm/sec)   p_kst 8.410000e-02   p_cons 6.996500e-01   p_joint 1.470000e-01

Outputting figure to mutsig2_images.part000000000189/VPS54.6_3022_20000_0.0841_0.69965_0.147.png
                gene_name: VPS54
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 27 percent done.
VTN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.396687e-02	ci left: 5.613302e-01	ci right 5.808283e-01	k: 5711	n:10000
Cons ci ratio: 5.748628e-02	ci left: 3.081821e-01	ci right 3.265244e-01	k: 3173	n:10000
KS ci ratio: 3.766434e-02	ci left: 5.100533e-01	ci right 5.297351e-01	k: 5199	n:10000
VTN   10000 perm   2 sec   (6009 perm/sec)   p_kst 5.199000e-01   p_cons 3.173000e-01   p_joint 5.711000e-01

Outputting figure to mutsig2_images.part000000000189/VTN.6_1469_10000_0.5199_0.3173_0.5711.png
                gene_name: VTN
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 29 percent done.
VGLL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.813094e-03	ci left: 9.363056e-01	ci right 9.456355e-01	k: 9411	n:10000
KS ci ratio: 1.419628e-02	ci left: 8.776639e-01	ci right 8.903114e-01	k: 8841	n:10000
VGLL1   10000 perm   2 sec   (6043 perm/sec)   p_kst 8.841000e-01   p_cons 9.411000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VGLL1.5_793_10000_0.8841_0.9411_1.png
                gene_name: VGLL1
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
VILL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919608e+00	ci left: 0	ci right 3.688199e-04	k: 0	n:10000
Cons ci ratio: 1.752551e+00	ci left: 1.089969e-04	ci right 1.023839e-03	k: 4	n:10000
KS ci ratio: 1.093325e-01	ci left: 1.076389e-01	ci right 1.201870e-01	k: 1138	n:10000
VILL   10000 perm   2 sec   (5317 perm/sec)   p_kst 1.138000e-01   p_cons 4.000000e-04   p_joint 0

Joint ci ratio: 3.440134e-01	ci left: 5.342070e-03	ci right 7.605013e-03	k: 128	n:20000
Cons ci ratio: 8.549436e-01	ci left: 6.109296e-04	ci right 1.543998e-03	k: 20	n:20000
KS ci ratio: 7.719653e-02	ci left: 1.097742e-01	ci right 1.186383e-01	k: 2283	n:20000
VILL   20000 perm   4 sec   (4752 perm/sec)   p_kst 1.141500e-01   p_cons 1.000000e-03   p_joint 6.400000e-03

Joint ci ratio: 3.512923e-01	ci left: 3.408625e-03	ci right 4.889942e-03	k: 123	n:30000
Cons ci ratio: 7.275617e-01	ci left: 6.202800e-04	ci right 1.348646e-03	k: 28	n:30000
KS ci ratio: 6.267027e-02	ci left: 1.117395e-01	ci right 1.190019e-01	k: 3460	n:30000
VILL   30000 perm   7 sec   (4536 perm/sec)   p_kst 1.153333e-01   p_cons 9.333333e-04   p_joint 4.100000e-03

Joint ci ratio: 3.634302e-01	ci left: 2.374173e-03	ci right 3.450008e-03	k: 115	n:40000
Cons ci ratio: 6.623027e-01	ci left: 5.887193e-04	ci right 1.187589e-03	k: 34	n:40000
KS ci ratio: 5.433190e-02	ci left: 1.120127e-01	ci right 1.182933e-01	k: 4605	n:40000
VILL   40000 perm   9 sec   (4410 perm/sec)   p_kst 1.151250e-01   p_cons 8.500000e-04   p_joint 2.875000e-03

Joint ci ratio: 3.574122e-01	ci left: 1.972016e-03	ci right 2.847358e-03	k: 119	n:50000
Cons ci ratio: 6.356599e-01	ci left: 5.210801e-04	ci right 1.019850e-03	k: 37	n:50000
KS ci ratio: 4.839439e-02	ci left: 1.131857e-01	ci right 1.188190e-01	k: 5799	n:50000
VILL   50000 perm   12 sec   (4306 perm/sec)   p_kst 1.159800e-01   p_cons 7.400000e-04   p_joint 2.380000e-03

Joint ci ratio: 3.734115e-01	ci left: 1.491902e-03	ci right 2.191030e-03	k: 109	n:60000
Cons ci ratio: 5.655722e-01	ci left: 5.756189e-04	ci right 1.041533e-03	k: 47	n:60000
KS ci ratio: 4.407051e-02	ci left: 1.139267e-01	ci right 1.190771e-01	k: 6989	n:60000
VILL   60000 perm   14 sec   (4208 perm/sec)   p_kst 1.164833e-01   p_cons 7.833333e-04   p_joint 1.816667e-03

Joint ci ratio: 3.684622e-01	ci left: 1.317612e-03	ci right 1.924903e-03	k: 112	n:70000
Cons ci ratio: 5.283612e-01	ci left: 5.795724e-04	ci right 1.006429e-03	k: 54	n:70000
KS ci ratio: 4.085529e-02	ci left: 1.138490e-01	ci right 1.186115e-01	k: 8135	n:70000
VILL   70000 perm   17 sec   (4137 perm/sec)   p_kst 1.162143e-01   p_cons 7.714286e-04   p_joint 1.600000e-03

Joint ci ratio: 3.701435e-01	ci left: 1.141550e-03	ci right 1.670671e-03	k: 111	n:80000
Cons ci ratio: 5.101491e-01	ci left: 5.505675e-04	ci right 9.371312e-04	k: 58	n:80000
KS ci ratio: 3.849187e-02	ci left: 1.125492e-01	ci right 1.169788e-01	k: 9180	n:80000
VILL   80000 perm   20 sec   (4067 perm/sec)   p_kst 1.147500e-01   p_cons 7.250000e-04   p_joint 1.387500e-03

Joint ci ratio: 3.606266e-01	ci left: 1.075250e-03	ci right 1.557815e-03	k: 117	n:90000
Cons ci ratio: 5.017317e-01	ci left: 5.087743e-04	ci right 8.580500e-04	k: 60	n:90000
KS ci ratio: 3.633746e-02	ci left: 1.124156e-01	ci right 1.165871e-01	k: 10304	n:90000
VILL   90000 perm   23 sec   (3998 perm/sec)   p_kst 1.144889e-01   p_cons 6.666667e-04   p_joint 1.300000e-03

Joint ci ratio: 3.561462e-01	ci left: 9.950163e-04	ci right 1.434737e-03	k: 120	n:100000
Cons ci ratio: 4.898407e-01	ci left: 4.841422e-04	ci right 8.059727e-04	k: 63	n:100000
KS ci ratio: 3.444558e-02	ci left: 1.126815e-01	ci right 1.166408e-01	k: 11465	n:100000
VILL   100000 perm   25 sec   (3938 perm/sec)   p_kst 1.146500e-01   p_cons 6.300000e-04   p_joint 1.200000e-03

Joint ci ratio: 3.823685e-01	ci left: 7.725682e-04	ci right 1.145462e-03	k: 104	n:110000
Cons ci ratio: 4.752207e-01	ci left: 4.720673e-04	ci right 7.734603e-04	k: 67	n:110000
KS ci ratio: 3.386495e-02	ci left: 1.067401e-01	ci right 1.104261e-01	k: 11943	n:110000
VILL   110000 perm   28 sec   (3879 perm/sec)   p_kst 1.085727e-01   p_cons 6.090909e-04   p_joint 9.454545e-04

Joint ci ratio: 3.860817e-01	ci left: 6.931249e-04	ci right 1.031748e-03	k: 102	n:120000
Cons ci ratio: 4.495106e-01	ci left: 4.916329e-04	ci right 7.833808e-04	k: 75	n:120000
KS ci ratio: 3.246352e-02	ci left: 1.065802e-01	ci right 1.101055e-01	k: 13000	n:120000
VILL   120000 perm   31 sec   (3821 perm/sec)   p_kst 1.083333e-01   p_cons 6.250000e-04   p_joint 8.500000e-04

Joint ci ratio: 3.823968e-01	ci left: 6.537033e-04	ci right 9.692518e-04	k: 104	n:130000
Cons ci ratio: 4.201258e-01	ci left: 5.291784e-04	ci right 8.169311e-04	k: 86	n:130000
KS ci ratio: 3.121408e-02	ci left: 1.065010e-01	ci right 1.098857e-01	k: 14064	n:130000
VILL   130000 perm   35 sec   (3728 perm/sec)   p_kst 1.081846e-01   p_cons 6.615385e-04   p_joint 8.000000e-04

Joint ci ratio: 3.591918e-01	ci left: 6.977033e-04	ci right 1.009284e-03	k: 118	n:140000
Cons ci ratio: 4.020456e-01	ci left: 5.426157e-04	ci right 8.215968e-04	k: 94	n:140000
KS ci ratio: 3.009304e-02	ci left: 1.064710e-01	ci right 1.097310e-01	k: 15133	n:140000
VILL   140000 perm   38 sec   (3660 perm/sec)   p_kst 1.080929e-01   p_cons 6.714286e-04   p_joint 8.428571e-04

Joint ci ratio: 3.547546e-01	ci left: 6.693943e-04	ci right 9.637880e-04	k: 121	n:150000
Cons ci ratio: 3.999539e-01	ci left: 5.124338e-04	ci right 7.741626e-04	k: 95	n:150000
KS ci ratio: 2.903151e-02	ci left: 1.067979e-01	ci right 1.099506e-01	k: 16255	n:150000
VILL   150000 perm   42 sec   (3592 perm/sec)   p_kst 1.083667e-01   p_cons 6.333333e-04   p_joint 8.066667e-04

Joint ci ratio: 3.188535e-01	ci left: 7.935307e-04	ci right 1.100018e-03	k: 150	n:160000
Cons ci ratio: 3.824261e-01	ci left: 5.311270e-04	ci right 7.875296e-04	k: 104	n:160000
KS ci ratio: 2.729101e-02	ci left: 1.126579e-01	ci right 1.157811e-01	k: 18274	n:160000
VILL   160000 perm   45 sec   (3544 perm/sec)   p_kst 1.142125e-01   p_cons 6.500000e-04   p_joint 9.375000e-04

Joint ci ratio: 3.107299e-01	ci left: 7.901940e-04	ci right 1.086075e-03	k: 158	n:170000
Cons ci ratio: 3.736353e-01	ci left: 5.265013e-04	ci right 7.733985e-04	k: 109	n:170000
KS ci ratio: 2.648787e-02	ci left: 1.126157e-01	ci right 1.156445e-01	k: 19401	n:170000
VILL   170000 perm   49 sec   (3500 perm/sec)   p_kst 1.141235e-01   p_cons 6.411765e-04   p_joint 9.294118e-04

Joint ci ratio: 3.147255e-01	ci left: 7.258120e-04	ci right 1.001784e-03	k: 154	n:180000
Cons ci ratio: 3.562429e-01	ci left: 5.527629e-04	ci right 7.971179e-04	k: 120	n:180000
KS ci ratio: 2.574533e-02	ci left: 1.126292e-01	ci right 1.155722e-01	k: 20537	n:180000
VILL   180000 perm   52 sec   (3456 perm/sec)   p_kst 1.140944e-01   p_cons 6.666667e-04   p_joint 8.555556e-04

Joint ci ratio: 3.167848e-01	ci left: 6.779163e-04	ci right 9.377051e-04	k: 152	n:190000
Cons ci ratio: 3.463647e-01	ci left: 5.572620e-04	ci right 7.952438e-04	k: 127	n:190000
KS ci ratio: 2.503000e-02	ci left: 1.128988e-01	ci right 1.157656e-01	k: 21722	n:190000
VILL   190000 perm   56 sec   (3413 perm/sec)   p_kst 1.143263e-01   p_cons 6.684211e-04   p_joint 8.000000e-04

Joint ci ratio: 3.254194e-01	ci left: 6.072398e-04	ci right 8.476134e-04	k: 144	n:200000
Cons ci ratio: 3.436941e-01	ci left: 5.385315e-04	ci right 7.663465e-04	k: 129	n:200000
KS ci ratio: 2.439943e-02	ci left: 1.129087e-01	ci right 1.157025e-01	k: 22860	n:200000
VILL   200000 perm   59 sec   (3364 perm/sec)   p_kst 1.143000e-01   p_cons 6.450000e-04   p_joint 7.200000e-04

Joint ci ratio: 3.232022e-01	ci left: 5.870711e-04	ci right 8.175491e-04	k: 146	n:210000
Cons ci ratio: 3.385276e-01	ci left: 5.303028e-04	ci right 7.505276e-04	k: 133	n:210000
KS ci ratio: 2.377121e-02	ci left: 1.132832e-01	ci right 1.160132e-01	k: 24075	n:210000
VILL   210000 perm   63 sec   (3324 perm/sec)   p_kst 1.146429e-01   p_cons 6.333333e-04   p_joint 6.952381e-04

Joint ci ratio: 1.802386e-01	ci left: 1.952084e-03	ci right 2.343037e-03	k: 471	n:220000
Cons ci ratio: 3.323843e-01	ci left: 5.270112e-04	ci right 7.410475e-04	k: 138	n:220000
KS ci ratio: 2.322752e-02	ci left: 1.132898e-01	ci right 1.159567e-01	k: 25216	n:220000
VILL   220000 perm   67 sec   (3285 perm/sec)   p_kst 1.146182e-01   p_cons 6.272727e-04   p_joint 2.140909e-03

Joint ci ratio: 1.747667e-01	ci left: 1.991854e-03	ci right 2.377385e-03	k: 501	n:230000
Cons ci ratio: 3.199616e-01	ci left: 5.480103e-04	ci right 7.605538e-04	k: 149	n:230000
KS ci ratio: 2.272194e-02	ci left: 1.132749e-01	ci right 1.158826e-01	k: 26352	n:230000
VILL   230000 perm   71 sec   (3246 perm/sec)   p_kst 1.145739e-01   p_cons 6.478261e-04   p_joint 2.178261e-03

Joint ci ratio: 1.737374e-01	ci left: 1.932765e-03	ci right 2.304423e-03	k: 507	n:240000
Cons ci ratio: 3.137485e-01	ci left: 5.481888e-04	ci right 7.558455e-04	k: 155	n:240000
KS ci ratio: 2.223202e-02	ci left: 1.134070e-01	ci right 1.159607e-01	k: 27523	n:240000
VILL   240000 perm   75 sec   (3207 perm/sec)   p_kst 1.146792e-01   p_cons 6.458333e-04   p_joint 2.112500e-03

Joint ci ratio: 2.246902e-01	ci left: 1.079429e-03	ci right 1.356343e-03	k: 303	n:250000
Cons ci ratio: 2.842780e-01	ci left: 6.520895e-04	ci right 8.717518e-04	k: 189	n:250000
KS ci ratio: 2.182665e-02	ci left: 1.130274e-01	ci right 1.155256e-01	k: 28568	n:250000
VILL   250000 perm   79 sec   (3170 perm/sec)   p_kst 1.142720e-01   p_cons 7.560000e-04   p_joint 1.212000e-03

Joint ci ratio: 2.312621e-01	ci left: 9.762550e-04	ci right 1.235073e-03	k: 286	n:260000
Cons ci ratio: 2.784756e-01	ci left: 6.556078e-04	ci right 8.711572e-04	k: 197	n:260000
KS ci ratio: 2.139782e-02	ci left: 1.130985e-01	ci right 1.155485e-01	k: 29723	n:260000
VILL   260000 perm   83 sec   (3134 perm/sec)   p_kst 1.143192e-01   p_cons 7.576923e-04   p_joint 1.100000e-03

Joint ci ratio: 2.277200e-01	ci left: 9.715142e-04	ci right 1.224576e-03	k: 295	n:270000
Cons ci ratio: 2.716979e-01	ci left: 6.658094e-04	ci right 8.784765e-04	k: 207	n:270000
KS ci ratio: 2.099100e-02	ci left: 1.131869e-01	ci right 1.155917e-01	k: 30884	n:270000
VILL   270000 perm   87 sec   (3098 perm/sec)   p_kst 1.143852e-01   p_cons 7.666667e-04   p_joint 1.092593e-03

Joint ci ratio: 2.243359e-01	ci left: 9.671401e-04	ci right 1.214801e-03	k: 304	n:280000
Cons ci ratio: 2.666188e-01	ci left: 6.686743e-04	ci right 8.775969e-04	k: 215	n:280000
KS ci ratio: 2.060582e-02	ci left: 1.132766e-01	ci right 1.156386e-01	k: 32047	n:280000
VILL   280000 perm   91 sec   (3063 perm/sec)   p_kst 1.144536e-01   p_cons 7.678571e-04   p_joint 1.085714e-03

Joint ci ratio: 2.176557e-01	ci left: 9.956835e-04	ci right 1.242047e-03	k: 323	n:290000
Cons ci ratio: 2.606524e-01	ci left: 6.778212e-04	ci right 8.840905e-04	k: 225	n:290000
KS ci ratio: 2.023764e-02	ci left: 1.133947e-01	ci right 1.157164e-01	k: 33220	n:290000
VILL   290000 perm   96 sec   (3029 perm/sec)   p_kst 1.145517e-01   p_cons 7.758621e-04   p_joint 1.113793e-03

Joint ci ratio: 2.153434e-01	ci left: 9.845615e-04	ci right 1.225243e-03	k: 330	n:300000
Cons ci ratio: 2.589416e-01	ci left: 6.645754e-04	ci right 8.652716e-04	k: 228	n:300000
KS ci ratio: 1.990192e-02	ci left: 1.133693e-01	ci right 1.156515e-01	k: 34352	n:300000
VILL   300000 perm   100 sec   (2994 perm/sec)   p_kst 1.145067e-01   p_cons 7.600000e-04   p_joint 1.100000e-03

Joint ci ratio: 2.118520e-01	ci left: 9.863874e-04	ci right 1.223098e-03	k: 341	n:310000
Cons ci ratio: 2.556153e-01	ci left: 6.612441e-04	ci right 8.579600e-04	k: 234	n:310000
KS ci ratio: 1.958237e-02	ci left: 1.133458e-01	ci right 1.155905e-01	k: 35484	n:310000
VILL   310000 perm   105 sec   (2961 perm/sec)   p_kst 1.144645e-01   p_cons 7.548387e-04   p_joint 1.100000e-03

Joint ci ratio: 2.106262e-01	ci left: 9.674005e-04	ci right 1.198038e-03	k: 345	n:320000
Cons ci ratio: 2.513722e-01	ci left: 6.639922e-04	ci right 8.577335e-04	k: 242	n:320000
KS ci ratio: 1.926972e-02	ci left: 1.134080e-01	ci right 1.156177e-01	k: 36643	n:320000
VILL   320000 perm   109 sec   (2929 perm/sec)   p_kst 1.145094e-01   p_cons 7.562500e-04   p_joint 1.078125e-03

Joint ci ratio: 2.190281e-01	ci left: 8.635296e-04	ci right 1.078722e-03	k: 319	n:330000
Cons ci ratio: 2.498365e-01	ci left: 6.523907e-04	ci right 8.414030e-04	k: 245	n:330000
KS ci ratio: 1.898263e-02	ci left: 1.133491e-01	ci right 1.155244e-01	k: 37763	n:330000
VILL   330000 perm   114 sec   (2899 perm/sec)   p_kst 1.144333e-01   p_cons 7.424242e-04   p_joint 9.666667e-04

Joint ci ratio: 2.166719e-01	ci left: 8.575963e-04	ci right 1.068705e-03	k: 326	n:340000
Cons ci ratio: 2.453875e-01	ci left: 6.580312e-04	ci right 8.447653e-04	k: 254	n:340000
KS ci ratio: 1.868739e-02	ci left: 1.135165e-01	ci right 1.156607e-01	k: 38959	n:340000
VILL   340000 perm   119 sec   (2868 perm/sec)   p_kst 1.145853e-01   p_cons 7.470588e-04   p_joint 9.588235e-04

Joint ci ratio: 2.147122e-01	ci left: 8.493099e-04	ci right 1.056239e-03	k: 332	n:350000
Cons ci ratio: 2.402589e-01	ci left: 6.687473e-04	ci right 8.539655e-04	k: 265	n:350000
KS ci ratio: 1.842002e-02	ci left: 1.135152e-01	ci right 1.156284e-01	k: 40099	n:350000
VILL   350000 perm   123 sec   (2838 perm/sec)   p_kst 1.145686e-01   p_cons 7.571429e-04   p_joint 9.485714e-04

Joint ci ratio: 2.121790e-01	ci left: 8.467522e-04	ci right 1.050307e-03	k: 340	n:360000
Cons ci ratio: 2.371589e-01	ci left: 6.684526e-04	ci right 8.508495e-04	k: 272	n:360000
KS ci ratio: 1.815685e-02	ci left: 1.135916e-01	ci right 1.156757e-01	k: 41267	n:360000
VILL   360000 perm   128 sec   (2809 perm/sec)   p_kst 1.146306e-01   p_cons 7.555556e-04   p_joint 9.444444e-04

Joint ci ratio: 2.091346e-01	ci left: 8.494684e-04	ci right 1.050371e-03	k: 350	n:370000
Cons ci ratio: 2.325196e-01	ci left: 6.783674e-04	ci right 8.593286e-04	k: 283	n:370000
KS ci ratio: 1.791585e-02	ci left: 1.135376e-01	ci right 1.155928e-01	k: 42388	n:370000
VILL   370000 perm   133 sec   (2779 perm/sec)   p_kst 1.145622e-01   p_cons 7.648649e-04   p_joint 9.459459e-04

Joint ci ratio: 2.059322e-01	ci left: 8.545573e-04	ci right 1.053179e-03	k: 361	n:380000
Cons ci ratio: 2.305002e-01	ci left: 6.729102e-04	ci right 8.506347e-04	k: 288	n:380000
KS ci ratio: 1.768099e-02	ci left: 1.135233e-01	ci right 1.155510e-01	k: 43523	n:380000
VILL   380000 perm   138 sec   (2749 perm/sec)   p_kst 1.145342e-01   p_cons 7.578947e-04   p_joint 9.500000e-04

Joint ci ratio: 2.048053e-01	ci left: 8.423740e-04	ci right 1.036959e-03	k: 365	n:390000
Cons ci ratio: 2.269924e-01	ci left: 6.774109e-04	ci right 8.532203e-04	k: 297	n:390000
KS ci ratio: 1.745534e-02	ci left: 1.135074e-01	ci right 1.155086e-01	k: 44657	n:390000
VILL   390000 perm   143 sec   (2721 perm/sec)   p_kst 1.145051e-01   p_cons 7.615385e-04   p_joint 9.358974e-04

Joint ci ratio: 2.036966e-01	ci left: 8.308027e-04	ci right 1.021546e-03	k: 369	n:400000
Cons ci ratio: 2.247417e-01	ci left: 6.746269e-04	ci right 8.477373e-04	k: 303	n:400000
KS ci ratio: 1.723558e-02	ci left: 1.135222e-01	ci right 1.154983e-01	k: 45803	n:400000
VILL   400000 perm   149 sec   (2689 perm/sec)   p_kst 1.145075e-01   p_cons 7.575000e-04   p_joint 9.225000e-04

Joint ci ratio: 2.053724e-01	ci left: 7.966531e-04	ci right 9.812497e-04	k: 363	n:410000
Cons ci ratio: 2.218416e-01	ci left: 6.765936e-04	ci right 8.476624e-04	k: 311	n:410000
KS ci ratio: 1.701511e-02	ci left: 1.136411e-01	ci right 1.155937e-01	k: 46992	n:410000
VILL   410000 perm   154 sec   (2661 perm/sec)   p_kst 1.146146e-01   p_cons 7.585366e-04   p_joint 8.853659e-04

Joint ci ratio: 2.002111e-01	ci left: 8.206275e-04	ci right 1.005417e-03	k: 382	n:420000
Cons ci ratio: 2.190509e-01	ci left: 6.784802e-04	ci right 8.475775e-04	k: 319	n:420000
KS ci ratio: 1.681037e-02	ci left: 1.136642e-01	ci right 1.155935e-01	k: 48143	n:420000
VILL   420000 perm   159 sec   (2635 perm/sec)   p_kst 1.146262e-01   p_cons 7.595238e-04   p_joint 9.095238e-04

Joint ci ratio: 2.050948e-01	ci left: 7.618041e-04	ci right 9.380571e-04	k: 364	n:430000
Cons ci ratio: 2.153795e-01	ci left: 6.868917e-04	ci right 8.548369e-04	k: 330	n:430000
KS ci ratio: 1.661362e-02	ci left: 1.136772e-01	ci right 1.155839e-01	k: 49290	n:430000
VILL   430000 perm   165 sec   (2610 perm/sec)   p_kst 1.146279e-01   p_cons 7.674419e-04   p_joint 8.465116e-04

Joint ci ratio: 2.031564e-01	ci left: 7.595862e-04	ci right 9.334589e-04	k: 371	n:440000
Cons ci ratio: 2.131377e-01	ci left: 6.863360e-04	ci right 8.521703e-04	k: 337	n:440000
KS ci ratio: 1.642729e-02	ci left: 1.136443e-01	ci right 1.155289e-01	k: 50417	n:440000
VILL   440000 perm   170 sec   (2582 perm/sec)   p_kst 1.145841e-01   p_cons 7.659091e-04   p_joint 8.431818e-04

Joint ci ratio: 2.247512e-01	ci left: 5.996657e-04	ci right 7.535480e-04	k: 303	n:450000
Cons ci ratio: 2.100526e-01	ci left: 6.921290e-04	ci right 8.566309e-04	k: 347	n:450000
KS ci ratio: 1.623981e-02	ci left: 1.137039e-01	ci right 1.155677e-01	k: 51585	n:450000
VILL   450000 perm   176 sec   (2553 perm/sec)   p_kst 1.146333e-01   p_cons 7.711111e-04   p_joint 6.733333e-04

Joint ci ratio: 2.225658e-01	ci left: 5.989422e-04	ci right 7.509396e-04	k: 309	n:460000
Cons ci ratio: 2.085603e-01	ci left: 6.873824e-04	ci right 8.494472e-04	k: 352	n:460000
KS ci ratio: 1.605258e-02	ci left: 1.138368e-01	ci right 1.156811e-01	k: 52788	n:460000
VILL   460000 perm   182 sec   (2530 perm/sec)   p_kst 1.147565e-01   p_cons 7.652174e-04   p_joint 6.717391e-04

Joint ci ratio: 2.207927e-01	ci left: 5.962463e-04	ci right 7.461903e-04	k: 314	n:470000
Cons ci ratio: 2.070993e-01	ci left: 6.828417e-04	ci right 8.425653e-04	k: 357	n:470000
KS ci ratio: 1.588182e-02	ci left: 1.138348e-01	ci right 1.156593e-01	k: 53930	n:470000
VILL   470000 perm   188 sec   (2505 perm/sec)   p_kst 1.147447e-01   p_cons 7.595745e-04   p_joint 6.680851e-04

Joint ci ratio: 2.187197e-01	ci left: 5.956365e-04	ci right 7.438317e-04	k: 320	n:480000
Cons ci ratio: 2.053857e-01	ci left: 6.804702e-04	ci right 8.381567e-04	k: 363	n:480000
KS ci ratio: 1.571672e-02	ci left: 1.138289e-01	ci right 1.156341e-01	k: 55070	n:480000
VILL   480000 perm   193 sec   (2482 perm/sec)   p_kst 1.147292e-01   p_cons 7.562500e-04   p_joint 6.666667e-04

Joint ci ratio: 2.215005e-01	ci left: 5.680532e-04	ci right 7.114275e-04	k: 312	n:490000
Cons ci ratio: 2.037139e-01	ci left: 6.782007e-04	ci right 8.339228e-04	k: 369	n:490000
KS ci ratio: 1.556151e-02	ci left: 1.137602e-01	ci right 1.155464e-01	k: 56179	n:490000
VILL   490000 perm   199 sec   (2461 perm/sec)   p_kst 1.146510e-01   p_cons 7.530612e-04   p_joint 6.367347e-04

Joint ci ratio: 2.285516e-01	ci left: 5.208320e-04	ci right 6.570632e-04	k: 293	n:500000
Cons ci ratio: 2.015466e-01	ci left: 6.798250e-04	ci right 8.340550e-04	k: 377	n:500000
KS ci ratio: 1.541202e-02	ci left: 1.136784e-01	ci right 1.154460e-01	k: 57280	n:500000
VILL   500000 perm   205 sec   (2439 perm/sec)   p_kst 1.145600e-01   p_cons 7.540000e-04   p_joint 5.860000e-04

Joint ci ratio: 2.293347e-01	ci left: 5.069225e-04	ci right 6.400341e-04	k: 291	n:510000
Cons ci ratio: 1.986759e-01	ci left: 6.869833e-04	ci right 8.403485e-04	k: 388	n:510000
KS ci ratio: 1.525643e-02	ci left: 1.137368e-01	ci right 1.154872e-01	k: 58451	n:510000
VILL   510000 perm   211 sec   (2417 perm/sec)   p_kst 1.146098e-01   p_cons 7.607843e-04   p_joint 5.705882e-04

Joint ci ratio: 2.281663e-01	ci left: 5.026125e-04	ci right 6.338252e-04	k: 294	n:520000
Cons ci ratio: 1.966639e-01	ci left: 6.883953e-04	ci right 8.403330e-04	k: 396	n:520000
KS ci ratio: 1.510503e-02	ci left: 1.137987e-01	ci right 1.155326e-01	k: 59625	n:520000
VILL   520000 perm   217 sec   (2396 perm/sec)   p_kst 1.146635e-01   p_cons 7.615385e-04   p_joint 5.653846e-04

Joint ci ratio: 2.255062e-01	ci left: 5.055865e-04	ci right 6.358229e-04	k: 301	n:530000
Cons ci ratio: 1.951947e-01	ci left: 6.861721e-04	ci right 8.363531e-04	k: 402	n:530000
KS ci ratio: 1.496055e-02	ci left: 1.138245e-01	ci right 1.155420e-01	k: 60781	n:530000
VILL   530000 perm   224 sec   (2371 perm/sec)   p_kst 1.146811e-01   p_cons 7.584906e-04   p_joint 5.679245e-04

Joint ci ratio: 2.225769e-01	ci left: 5.102074e-04	ci right 6.396930e-04	k: 309	n:540000
Cons ci ratio: 1.935213e-01	ci left: 6.857974e-04	ci right 8.344581e-04	k: 409	n:540000
KS ci ratio: 1.482014e-02	ci left: 1.138494e-01	ci right 1.155511e-01	k: 61937	n:540000
VILL   540000 perm   230 sec   (2350 perm/sec)   p_kst 1.146981e-01   p_cons 7.574074e-04   p_joint 5.722222e-04

Joint ci ratio: 2.194140e-01	ci left: 5.163890e-04	ci right 6.453299e-04	k: 318	n:550000
Cons ci ratio: 1.914314e-01	ci left: 6.889036e-04	ci right 8.364372e-04	k: 418	n:550000
KS ci ratio: 1.469006e-02	ci left: 1.137847e-01	ci right 1.154703e-01	k: 63044	n:550000
VILL   550000 perm   236 sec   (2330 perm/sec)   p_kst 1.146255e-01   p_cons 7.600000e-04   p_joint 5.781818e-04

Joint ci ratio: 2.170453e-01	ci left: 5.189846e-04	ci right 6.469883e-04	k: 325	n:560000
Cons ci ratio: 1.896296e-01	ci left: 6.902061e-04	ci right 8.364671e-04	k: 426	n:560000
KS ci ratio: 1.456449e-02	ci left: 1.137063e-01	ci right 1.153763e-01	k: 64142	n:560000
VILL   560000 perm   242 sec   (2311 perm/sec)   p_kst 1.145393e-01   p_cons 7.607143e-04   p_joint 5.803571e-04

Joint ci ratio: 2.163833e-01	ci left: 5.131978e-04	ci right 6.393367e-04	k: 327	n:570000
Cons ci ratio: 1.872327e-01	ci left: 6.964854e-04	ci right 8.419995e-04	k: 437	n:570000
KS ci ratio: 1.443248e-02	ci left: 1.137654e-01	ci right 1.154210e-01	k: 65317	n:570000
VILL   570000 perm   249 sec   (2291 perm/sec)   p_kst 1.145912e-01   p_cons 7.666667e-04   p_joint 5.736842e-04

Joint ci ratio: 2.183922e-01	ci left: 4.945674e-04	ci right 6.174072e-04	k: 321	n:580000
Cons ci ratio: 1.855458e-01	ci left: 6.976266e-04	ci right 8.419182e-04	k: 445	n:580000
KS ci ratio: 1.430593e-02	ci left: 1.137950e-01	ci right 1.154364e-01	k: 66476	n:580000
VILL   580000 perm   255 sec   (2272 perm/sec)   p_kst 1.146138e-01   p_cons 7.672414e-04   p_joint 5.534483e-04

Joint ci ratio: 2.201098e-01	ci left: 4.781752e-04	ci right 5.980041e-04	k: 316	n:590000
Cons ci ratio: 1.839038e-01	ci left: 6.987347e-04	ci right 8.418340e-04	k: 453	n:590000
KS ci ratio: 1.417946e-02	ci left: 1.138693e-01	ci right 1.154971e-01	k: 67662	n:590000
VILL   590000 perm   262 sec   (2252 perm/sec)   p_kst 1.146814e-01   p_cons 7.677966e-04   p_joint 5.355932e-04

Joint ci ratio: 2.183943e-01	ci left: 4.780814e-04	ci right 5.968276e-04	k: 321	n:600000
Cons ci ratio: 1.821074e-01	ci left: 7.014021e-04	ci right 8.434897e-04	k: 462	n:600000
KS ci ratio: 1.406378e-02	ci left: 1.138332e-01	ci right 1.154471e-01	k: 68783	n:600000
VILL   600000 perm   269 sec   (2233 perm/sec)   p_kst 1.146383e-01   p_cons 7.700000e-04   p_joint 5.350000e-04

Joint ci ratio: 2.170505e-01	ci left: 4.764437e-04	ci right 5.939580e-04	k: 325	n:610000
Cons ci ratio: 1.799814e-01	ci left: 7.071195e-04	ci right 8.485109e-04	k: 473	n:610000
KS ci ratio: 1.394582e-02	ci left: 1.138719e-01	ci right 1.154727e-01	k: 69949	n:610000
VILL   610000 perm   276 sec   (2214 perm/sec)   p_kst 1.146705e-01   p_cons 7.754098e-04   p_joint 5.327869e-04

Joint ci ratio: 2.160591e-01	ci left: 4.733353e-04	ci right 5.894789e-04	k: 328	n:620000
Cons ci ratio: 1.794153e-01	ci left: 7.003352e-04	ci right 8.398816e-04	k: 476	n:620000
KS ci ratio: 1.383056e-02	ci left: 1.139126e-01	ci right 1.155007e-01	k: 71117	n:620000
VILL   620000 perm   282 sec   (2196 perm/sec)   p_kst 1.147048e-01   p_cons 7.677419e-04   p_joint 5.290323e-04

Joint ci ratio: 2.147577e-01	ci left: 4.718287e-04	ci right 5.868134e-04	k: 332	n:630000
Cons ci ratio: 1.782976e-01	ci left: 6.983161e-04	ci right 8.365000e-04	k: 482	n:630000
KS ci ratio: 1.371843e-02	ci left: 1.139473e-01	ci right 1.155229e-01	k: 72282	n:630000
VILL   630000 perm   289 sec   (2178 perm/sec)   p_kst 1.147333e-01   p_cons 7.650794e-04   p_joint 5.269841e-04

Joint ci ratio: 2.150820e-01	ci left: 4.629778e-04	ci right 5.759983e-04	k: 331	n:640000
Cons ci ratio: 1.775644e-01	ci left: 6.933764e-04	ci right 8.299580e-04	k: 486	n:640000
KS ci ratio: 1.361338e-02	ci left: 1.139156e-01	ci right 1.154785e-01	k: 73405	n:640000
VILL   640000 perm   296 sec   (2160 perm/sec)   p_kst 1.146953e-01   p_cons 7.593750e-04   p_joint 5.171875e-04

Joint ci ratio: 2.128495e-01	ci left: 4.660473e-04	ci right 5.784821e-04	k: 338	n:650000
Cons ci ratio: 1.754158e-01	ci left: 7.003553e-04	ci right 8.364653e-04	k: 498	n:650000
KS ci ratio: 1.350621e-02	ci left: 1.139524e-01	ci right 1.155034e-01	k: 74572	n:650000
VILL   650000 perm   303 sec   (2142 perm/sec)   p_kst 1.147262e-01   p_cons 7.661538e-04   p_joint 5.200000e-04

Joint ci ratio: 2.109904e-01	ci left: 4.675945e-04	ci right 5.792899e-04	k: 344	n:660000
Cons ci ratio: 1.740263e-01	ci left: 7.013351e-04	ci right 8.364424e-04	k: 506	n:660000
KS ci ratio: 1.340333e-02	ci left: 1.139609e-01	ci right 1.155001e-01	k: 75721	n:660000
VILL   660000 perm   311 sec   (2125 perm/sec)   p_kst 1.147288e-01   p_cons 7.666667e-04   p_joint 5.212121e-04

Joint ci ratio: 2.085854e-01	ci left: 4.719286e-04	ci right 5.832103e-04	k: 352	n:670000
Cons ci ratio: 1.728373e-01	ci left: 7.008616e-04	ci right 8.348590e-04	k: 513	n:670000
KS ci ratio: 1.330227e-02	ci left: 1.139766e-01	ci right 1.155044e-01	k: 76875	n:670000
VILL   670000 perm   318 sec   (2109 perm/sec)   p_kst 1.147388e-01   p_cons 7.656716e-04   p_joint 5.253731e-04

Joint ci ratio: 2.106867e-01	ci left: 4.552343e-04	ci right 5.638005e-04	k: 345	n:680000
Cons ci ratio: 1.721692e-01	ci left: 6.961830e-04	ci right 8.287179e-04	k: 517	n:680000
KS ci ratio: 1.320356e-02	ci left: 1.139904e-01	ci right 1.155070e-01	k: 78028	n:680000
VILL   680000 perm   325 sec   (2093 perm/sec)   p_kst 1.147471e-01   p_cons 7.602941e-04   p_joint 5.073529e-04

Joint ci ratio: 2.077058e-01	ci left: 4.623705e-04	ci right 5.708801e-04	k: 355	n:690000
Cons ci ratio: 1.708548e-01	ci left: 6.971900e-04	ci right 8.287989e-04	k: 525	n:690000
KS ci ratio: 1.310506e-02	ci left: 1.140343e-01	ci right 1.155400e-01	k: 79202	n:690000
VILL   690000 perm   332 sec   (2077 perm/sec)   p_kst 1.147855e-01   p_cons 7.608696e-04   p_joint 5.144928e-04

Joint ci ratio: 2.054103e-01	ci left: 4.666027e-04	ci right 5.747434e-04	k: 363	n:700000
Cons ci ratio: 1.687812e-01	ci left: 7.050125e-04	ci right 8.363186e-04	k: 538	n:700000
KS ci ratio: 1.300680e-02	ci left: 1.141068e-01	ci right 1.156021e-01	k: 80397	n:700000
VILL   700000 perm   340 sec   (2062 perm/sec)   p_kst 1.148529e-01   p_cons 7.685714e-04   p_joint 5.185714e-04

Joint ci ratio: 2.074161e-01	ci left: 4.506809e-04	ci right 5.562809e-04	k: 356	n:710000
Cons ci ratio: 1.678498e-01	ci left: 7.031774e-04	ci right 8.333459e-04	k: 544	n:710000
KS ci ratio: 1.291216e-02	ci left: 1.141549e-01	ci right 1.156398e-01	k: 81576	n:710000
VILL   710000 perm   347 sec   (2046 perm/sec)   p_kst 1.148958e-01   p_cons 7.661972e-04   p_joint 5.014085e-04

Joint ci ratio: 2.065503e-01	ci left: 4.483721e-04	ci right 5.529372e-04	k: 359	n:720000
Cons ci ratio: 1.673902e-01	ci left: 6.974028e-04	ci right 8.261132e-04	k: 547	n:720000
KS ci ratio: 1.282498e-02	ci left: 1.141158e-01	ci right 1.155901e-01	k: 82693	n:720000
VILL   720000 perm   355 sec   (2030 perm/sec)   p_kst 1.148514e-01   p_cons 7.597222e-04   p_joint 4.986111e-04

Joint ci ratio: 2.051307e-01	ci left: 4.487263e-04	ci right 5.525646e-04	k: 364	n:730000
Cons ci ratio: 1.664815e-01	ci left: 6.957250e-04	ci right 8.233589e-04	k: 553	n:730000
KS ci ratio: 1.273653e-02	ci left: 1.141256e-01	ci right 1.155898e-01	k: 83845	n:730000
VILL   730000 perm   362 sec   (2015 perm/sec)   p_kst 1.148562e-01   p_cons 7.575342e-04   p_joint 4.986301e-04

Joint ci ratio: 2.037400e-01	ci left: 4.490733e-04	ci right 5.521997e-04	k: 369	n:740000
Cons ci ratio: 1.658841e-01	ci left: 6.915038e-04	ci right 8.178626e-04	k: 557	n:740000
KS ci ratio: 1.264796e-02	ci left: 1.141662e-01	ci right 1.156206e-01	k: 85020	n:740000
VILL   740000 perm   370 sec   (2000 perm/sec)   p_kst 1.148919e-01   p_cons 7.527027e-04   p_joint 4.986486e-04

Joint ci ratio: 2.029193e-01	ci left: 4.468820e-04	ci right 5.490405e-04	k: 372	n:750000
Cons ci ratio: 1.645622e-01	ci left: 6.937876e-04	ci right 8.194535e-04	k: 566	n:750000
KS ci ratio: 1.256508e-02	ci left: 1.141432e-01	ci right 1.155878e-01	k: 86148	n:750000
VILL   750000 perm   378 sec   (1984 perm/sec)   p_kst 1.148640e-01   p_cons 7.546667e-04   p_joint 4.960000e-04

Joint ci ratio: 2.013065e-01	ci left: 4.484972e-04	ci right 5.501099e-04	k: 378	n:760000
Cons ci ratio: 1.634133e-01	ci left: 6.947532e-04	ci right 8.196291e-04	k: 574	n:760000
KS ci ratio: 1.248616e-02	ci left: 1.140828e-01	ci right 1.155175e-01	k: 87247	n:760000
VILL   760000 perm   386 sec   (1970 perm/sec)   p_kst 1.147987e-01   p_cons 7.552632e-04   p_joint 4.973684e-04

Joint ci ratio: 2.010420e-01	ci left: 4.439057e-04	ci right 5.443298e-04	k: 379	n:770000
Cons ci ratio: 1.615962e-01	ci left: 7.019272e-04	ci right 8.265534e-04	k: 587	n:770000
KS ci ratio: 1.240275e-02	ci left: 1.141212e-01	ci right 1.155467e-01	k: 88421	n:770000
VILL   770000 perm   394 sec   (1955 perm/sec)   p_kst 1.148325e-01   p_cons 7.623377e-04   p_joint 4.922078e-04

Joint ci ratio: 2.002533e-01	ci left: 4.418675e-04	ci right 5.413904e-04	k: 382	n:780000
Cons ci ratio: 1.609138e-01	ci left: 6.990796e-04	ci right 8.226254e-04	k: 592	n:780000
KS ci ratio: 1.232178e-02	ci left: 1.141458e-01	ci right 1.155622e-01	k: 89585	n:780000
VILL   780000 perm   402 sec   (1941 perm/sec)   p_kst 1.148526e-01   p_cons 7.589744e-04   p_joint 4.897436e-04

Joint ci ratio: 1.999929e-01	ci left: 4.374765e-04	ci right 5.358667e-04	k: 383	n:790000
Cons ci ratio: 1.597063e-01	ci left: 7.011660e-04	ci right 8.240614e-04	k: 601	n:790000
KS ci ratio: 1.224556e-02	ci left: 1.141168e-01	ci right 1.155240e-01	k: 90707	n:790000
VILL   790000 perm   410 sec   (1926 perm/sec)   p_kst 1.148190e-01   p_cons 7.607595e-04   p_joint 4.848101e-04

Joint ci ratio: 1.994745e-01	ci left: 4.343830e-04	ci right 5.317933e-04	k: 385	n:800000
Cons ci ratio: 1.590474e-01	ci left: 6.984020e-04	ci right 8.202598e-04	k: 606	n:800000
KS ci ratio: 1.216836e-02	ci left: 1.141284e-01	ci right 1.155269e-01	k: 91861	n:800000
VILL   800000 perm   418 sec   (1912 perm/sec)   p_kst 1.148263e-01   p_cons 7.575000e-04   p_joint 4.812500e-04

Joint ci ratio: 1.989601e-01	ci left: 4.313661e-04	ci right 5.278202e-04	k: 387	n:810000
Cons ci ratio: 1.580095e-01	ci left: 6.992646e-04	ci right 8.204011e-04	k: 614	n:810000
KS ci ratio: 1.209398e-02	ci left: 1.141164e-01	ci right 1.155061e-01	k: 92996	n:810000
VILL   810000 perm   427 sec   (1899 perm/sec)   p_kst 1.148099e-01   p_cons 7.580247e-04   p_joint 4.777778e-04

Joint ci ratio: 1.308133e-01	ci left: 1.022334e-03	ci right 1.166594e-03	k: 896	n:820000
Cons ci ratio: 1.408349e-01	ci left: 8.774191e-04	ci right 1.011512e-03	k: 773	n:820000
KS ci ratio: 1.201995e-02	ci left: 1.141217e-01	ci right 1.155029e-01	k: 94145	n:820000
VILL   820000 perm   435 sec   (1885 perm/sec)   p_kst 1.148110e-01   p_cons 9.426829e-04   p_joint 1.092683e-03

Joint ci ratio: 1.271087e-01	ci left: 1.071814e-03	ci right 1.218450e-03	k: 949	n:830000
Cons ci ratio: 1.386997e-01	ci left: 8.947529e-04	ci right 1.029251e-03	k: 797	n:830000
KS ci ratio: 1.194868e-02	ci left: 1.141029e-01	ci right 1.154757e-01	k: 95274	n:830000
VILL   830000 perm   444 sec   (1871 perm/sec)   p_kst 1.147880e-01   p_cons 9.602410e-04   p_joint 1.143373e-03

Joint ci ratio: 1.265771e-01	ci left: 1.068276e-03	ci right 1.213771e-03	k: 957	n:840000
Cons ci ratio: 1.377534e-01	ci left: 8.967436e-04	ci right 1.030546e-03	k: 808	n:840000
KS ci ratio: 1.187740e-02	ci left: 1.141060e-01	ci right 1.154705e-01	k: 96421	n:840000
VILL   840000 perm   452 sec   (1858 perm/sec)   p_kst 1.147869e-01   p_cons 9.619048e-04   p_joint 1.139286e-03

Joint ci ratio: 1.298057e-01	ci left: 1.002184e-03	ci right 1.142428e-03	k: 910	n:850000
Cons ci ratio: 1.369935e-01	ci left: 8.964180e-04	ci right 1.029374e-03	k: 817	n:850000
KS ci ratio: 1.180882e-02	ci left: 1.140843e-01	ci right 1.154407e-01	k: 97547	n:850000
VILL   850000 perm   461 sec   (1845 perm/sec)   p_kst 1.147612e-01   p_cons 9.611765e-04   p_joint 1.070588e-03

Joint ci ratio: 1.288194e-01	ci left: 1.006284e-03	ci right 1.145949e-03	k: 924	n:860000
Cons ci ratio: 1.357541e-01	ci left: 9.028415e-04	ci right 1.035440e-03	k: 832	n:860000
KS ci ratio: 1.174196e-02	ci left: 1.140539e-01	ci right 1.154022e-01	k: 98665	n:860000
VILL   860000 perm   469 sec   (1832 perm/sec)   p_kst 1.147267e-01   p_cons 9.674419e-04   p_joint 1.074419e-03

Joint ci ratio: 1.279918e-01	ci left: 1.008067e-03	ci right 1.147013e-03	k: 936	n:870000
Cons ci ratio: 1.351875e-01	ci left: 9.002372e-04	ci right 1.031857e-03	k: 839	n:870000
KS ci ratio: 1.167073e-02	ci left: 1.141194e-01	ci right 1.154602e-01	k: 99866	n:870000
VILL   870000 perm   478 sec   (1820 perm/sec)   p_kst 1.147885e-01   p_cons 9.643678e-04   p_joint 1.075862e-03

Joint ci ratio: 1.273143e-01	ci left: 1.007613e-03	ci right 1.145705e-03	k: 946	n:880000
Cons ci ratio: 1.346279e-01	ci left: 8.976932e-04	ci right 1.028355e-03	k: 846	n:880000
KS ci ratio: 1.159988e-02	ci left: 1.141993e-01	ci right 1.155328e-01	k: 101081	n:880000
VILL   880000 perm   487 sec   (1806 perm/sec)   p_kst 1.148648e-01   p_cons 9.613636e-04   p_joint 1.075000e-03

Joint ci ratio: 1.267801e-01	ci left: 1.004994e-03	ci right 1.142106e-03	k: 954	n:890000
Cons ci ratio: 1.339183e-01	ci left: 8.973794e-04	ci right 1.027252e-03	k: 855	n:890000
KS ci ratio: 1.153840e-02	ci left: 1.141350e-01	ci right 1.154607e-01	k: 102169	n:890000
VILL   890000 perm   496 sec   (1793 perm/sec)   p_kst 1.147966e-01   p_cons 9.606742e-04   p_joint 1.071910e-03

Joint ci ratio: 1.258607e-01	ci left: 1.008892e-03	ci right 1.145463e-03	k: 968	n:900000
Cons ci ratio: 1.330660e-01	ci left: 8.992227e-04	ci right 1.028468e-03	k: 866	n:900000
KS ci ratio: 1.147386e-02	ci left: 1.141432e-01	ci right 1.154615e-01	k: 103321	n:900000
VILL   900000 perm   505 sec   (1781 perm/sec)   p_kst 1.148011e-01   p_cons 9.622222e-04   p_joint 1.075556e-03

Joint ci ratio: 1.279948e-01	ci left: 9.637553e-04	ci right 1.096597e-03	k: 936	n:910000
Cons ci ratio: 1.327605e-01	ci left: 8.935904e-04	ci right 1.021708e-03	k: 870	n:910000
KS ci ratio: 1.140886e-02	ci left: 1.141786e-01	ci right 1.154898e-01	k: 104498	n:910000
VILL   910000 perm   514 sec   (1769 perm/sec)   p_kst 1.148330e-01   p_cons 9.560440e-04   p_joint 1.028571e-03

Joint ci ratio: 1.275196e-01	ci left: 9.606451e-04	ci right 1.092529e-03	k: 943	n:920000
Cons ci ratio: 1.322304e-01	ci left: 8.912339e-04	ci right 1.018464e-03	k: 877	n:920000
KS ci ratio: 1.134385e-02	ci left: 1.142328e-01	ci right 1.155371e-01	k: 105693	n:920000
VILL   920000 perm   524 sec   (1757 perm/sec)   p_kst 1.148837e-01   p_cons 9.532609e-04   p_joint 1.025000e-03

Joint ci ratio: 1.286854e-01	ci left: 9.326209e-04	ci right 1.061917e-03	k: 926	n:930000
Cons ci ratio: 1.313357e-01	ci left: 8.941286e-04	ci right 1.020841e-03	k: 889	n:930000
KS ci ratio: 1.128144e-02	ci left: 1.142590e-01	ci right 1.155563e-01	k: 106863	n:930000
VILL   930000 perm   533 sec   (1746 perm/sec)   p_kst 1.149065e-01   p_cons 9.559140e-04   p_joint 9.956989e-04

Joint ci ratio: 1.282025e-01	ci left: 9.299069e-04	ci right 1.058306e-03	k: 933	n:940000
Cons ci ratio: 1.308225e-01	ci left: 8.918192e-04	ci right 1.017672e-03	k: 896	n:940000
KS ci ratio: 1.121934e-02	ci left: 1.142974e-01	ci right 1.155880e-01	k: 108045	n:940000
VILL   940000 perm   542 sec   (1734 perm/sec)   p_kst 1.149415e-01   p_cons 9.531915e-04   p_joint 9.925532e-04

Joint ci ratio: 1.307502e-01	ci left: 8.834495e-04	ci right 1.008047e-03	k: 897	n:950000
Cons ci ratio: 1.300275e-01	ci left: 8.936328e-04	ci right 1.018916e-03	k: 907	n:950000
KS ci ratio: 1.116126e-02	ci left: 1.142804e-01	ci right 1.155641e-01	k: 109175	n:950000
VILL   950000 perm   552 sec   (1722 perm/sec)   p_kst 1.149211e-01   p_cons 9.547368e-04   p_joint 9.442105e-04

Joint ci ratio: 1.329932e-01	ci left: 8.440266e-04	ci right 9.652673e-04	k: 867	n:960000
Cons ci ratio: 1.294586e-01	ci left: 8.923869e-04	ci right 1.016906e-03	k: 915	n:960000
KS ci ratio: 1.110253e-02	ci left: 1.142918e-01	ci right 1.155688e-01	k: 110332	n:960000
VILL   960000 perm   561 sec   (1711 perm/sec)   p_kst 1.149292e-01   p_cons 9.531250e-04   p_joint 9.031250e-04

Joint ci ratio: 1.320832e-01	ci left: 8.472864e-04	ci right 9.680970e-04	k: 879	n:970000
Cons ci ratio: 1.285494e-01	ci left: 8.961567e-04	ci right 1.020256e-03	k: 928	n:970000
KS ci ratio: 1.104366e-02	ci left: 1.143226e-01	ci right 1.155931e-01	k: 111508	n:970000
VILL   970000 perm   571 sec   (1700 perm/sec)   p_kst 1.149567e-01   p_cons 9.567010e-04   p_joint 9.061856e-04

Joint ci ratio: 1.315611e-01	ci left: 8.455479e-04	ci right 9.655968e-04	k: 886	n:980000
Cons ci ratio: 1.276590e-01	ci left: 8.998526e-04	ci right 1.023536e-03	k: 941	n:980000
KS ci ratio: 1.098748e-02	ci left: 1.143201e-01	ci right 1.155842e-01	k: 112652	n:980000
VILL   980000 perm   580 sec   (1689 perm/sec)   p_kst 1.149510e-01   p_cons 9.602041e-04   p_joint 9.040816e-04

Joint ci ratio: 1.309718e-01	ci left: 8.448224e-04	ci right 9.641894e-04	k: 894	n:990000
Cons ci ratio: 1.271205e-01	ci left: 8.985864e-04	ci right 1.021535e-03	k: 949	n:990000
KS ci ratio: 1.092889e-02	ci left: 1.143782e-01	ci right 1.156361e-01	k: 113856	n:990000
VILL   990000 perm   590 sec   (1677 perm/sec)   p_kst 1.150061e-01   p_cons 9.585859e-04   p_joint 9.030303e-04

Joint ci ratio: 1.301742e-01	ci left: 8.470149e-04	ci right 9.659065e-04	k: 905	n:1000000
Cons ci ratio: 1.265226e-01	ci left: 8.983150e-04	ci right 1.020605e-03	k: 958	n:1000000
KS ci ratio: 1.087379e-02	ci left: 1.143873e-01	ci right 1.156389e-01	k: 115012	n:1000000
VILL   1000000 perm   600 sec   (1667 perm/sec)   p_kst 1.150120e-01   p_cons 9.580000e-04   p_joint 9.050000e-04

Joint ci ratio: 1.294616e-01	ci left: 8.482081e-04	ci right 9.665654e-04	k: 915	n:1010000
Cons ci ratio: 1.254798e-01	ci left: 9.047633e-04	ci right 1.026841e-03	k: 974	n:1010000
KS ci ratio: 1.082178e-02	ci left: 1.143537e-01	ci right 1.155990e-01	k: 116125	n:1010000
VILL   1010000 perm   610 sec   (1656 perm/sec)   p_kst 1.149752e-01   p_cons 9.643564e-04   p_joint 9.059406e-04

Joint ci ratio: 1.301754e-01	ci left: 8.304063e-04	ci right 9.469677e-04	k: 905	n:1020000
Cons ci ratio: 1.250319e-01	ci left: 9.025407e-04	ci right 1.023851e-03	k: 981	n:1020000
KS ci ratio: 1.076698e-02	ci left: 1.143874e-01	ci right 1.156266e-01	k: 117306	n:1020000
VILL   1020000 perm   620 sec   (1646 perm/sec)   p_kst 1.150059e-01   p_cons 9.617647e-04   p_joint 8.872549e-04

Joint ci ratio: 1.297466e-01	ci left: 8.279799e-04	ci right 9.437885e-04	k: 911	n:1030000
Cons ci ratio: 1.242748e-01	ci left: 9.050655e-04	ci right 1.025924e-03	k: 993	n:1030000
KS ci ratio: 1.071137e-02	ci left: 1.144513e-01	ci right 1.156848e-01	k: 118519	n:1030000
VILL   1030000 perm   630 sec   (1636 perm/sec)   p_kst 1.150670e-01   p_cons 9.640777e-04   p_joint 8.844660e-04

Joint ci ratio: 1.614750e-01	ci left: 5.206148e-04	ci right 6.129729e-04	k: 588	n:1040000
Cons ci ratio: 1.381942e-01	ci left: 7.196466e-04	ci right 8.273959e-04	k: 803	n:1040000
KS ci ratio: 1.066079e-02	ci left: 1.144345e-01	ci right 1.156619e-01	k: 119649	n:1040000
VILL   1040000 perm   640 sec   (1626 perm/sec)   p_kst 1.150471e-01   p_cons 7.721154e-04   p_joint 5.653846e-04

Joint ci ratio: 1.607940e-01	ci left: 5.202264e-04	ci right 6.120888e-04	k: 593	n:1050000
Cons ci ratio: 1.375118e-01	ci left: 7.201491e-04	ci right 8.273976e-04	k: 811	n:1050000
KS ci ratio: 1.060963e-02	ci left: 1.144426e-01	ci right 1.156642e-01	k: 120805	n:1050000
VILL   1050000 perm   650 sec   (1616 perm/sec)   p_kst 1.150524e-01   p_cons 7.723810e-04   p_joint 5.647619e-04

Joint ci ratio: 1.627245e-01	ci left: 5.026453e-04	ci right 5.925731e-04	k: 579	n:1060000
Cons ci ratio: 1.369229e-01	ci left: 7.197323e-04	ci right 8.264223e-04	k: 818	n:1060000
KS ci ratio: 1.055915e-02	ci left: 1.144516e-01	ci right 1.156675e-01	k: 121962	n:1060000
VILL   1060000 perm   660 sec   (1606 perm/sec)   p_kst 1.150585e-01   p_cons 7.716981e-04   p_joint 5.462264e-04

Joint ci ratio: 1.618893e-01	ci left: 5.033275e-04	ci right 5.928701e-04	k: 585	n:1070000
Cons ci ratio: 1.365070e-01	ci left: 7.175188e-04	ci right 8.235315e-04	k: 823	n:1070000
KS ci ratio: 1.051218e-02	ci left: 1.144064e-01	ci right 1.156163e-01	k: 123061	n:1070000
VILL   1070000 perm   671 sec   (1596 perm/sec)   p_kst 1.150103e-01   p_cons 7.691589e-04   p_joint 5.467290e-04

Joint ci ratio: 1.631481e-01	ci left: 4.906723e-04	ci right 5.787089e-04	k: 576	n:1080000
Cons ci ratio: 1.360128e-01	ci left: 7.162413e-04	ci right 8.216510e-04	k: 829	n:1080000
KS ci ratio: 1.046712e-02	ci left: 1.143370e-01	ci right 1.155410e-01	k: 124133	n:1080000
VILL   1080000 perm   681 sec   (1586 perm/sec)   p_kst 1.149380e-01   p_cons 7.675926e-04   p_joint 5.333333e-04

Joint ci ratio: 1.620285e-01	ci left: 4.932116e-04	ci right 5.810374e-04	k: 584	n:1090000
Cons ci ratio: 1.355240e-01	ci left: 7.149878e-04	ci right 8.198044e-04	k: 835	n:1090000
KS ci ratio: 1.041652e-02	ci left: 1.143879e-01	ci right 1.155866e-01	k: 125335	n:1090000
VILL   1090000 perm   691 sec   (1576 perm/sec)   p_kst 1.149862e-01   p_cons 7.660550e-04   p_joint 5.357798e-04

Joint ci ratio: 1.613405e-01	ci left: 4.930894e-04	ci right 5.804845e-04	k: 589	n:1100000
Cons ci ratio: 1.348002e-01	ci left: 7.163931e-04	ci right 8.208099e-04	k: 844	n:1100000
KS ci ratio: 1.037022e-02	ci left: 1.143681e-01	ci right 1.155612e-01	k: 126460	n:1100000
VILL   1100000 perm   702 sec   (1566 perm/sec)   p_kst 1.149636e-01   p_cons 7.672727e-04   p_joint 5.354545e-04

Joint ci ratio: 1.603917e-01	ci left: 4.946997e-04	ci right 5.818148e-04	k: 596	n:1110000
Cons ci ratio: 1.339311e-01	ci left: 7.195160e-04	ci right 8.236580e-04	k: 855	n:1110000
KS ci ratio: 1.032293e-02	ci left: 1.143801e-01	ci right 1.155678e-01	k: 127620	n:1110000
VILL   1110000 perm   713 sec   (1557 perm/sec)   p_kst 1.149730e-01   p_cons 7.702703e-04   p_joint 5.369369e-04

Joint ci ratio: 1.599904e-01	ci left: 4.928538e-04	ci right 5.794060e-04	k: 599	n:1120000
Cons ci ratio: 1.333096e-01	ci left: 7.199959e-04	ci right 8.236854e-04	k: 863	n:1120000
KS ci ratio: 1.027880e-02	ci left: 1.143420e-01	ci right 1.155243e-01	k: 128724	n:1120000
VILL   1120000 perm   723 sec   (1548 perm/sec)   p_kst 1.149321e-01   p_cons 7.705357e-04   p_joint 5.348214e-04

Joint ci ratio: 1.597246e-01	ci left: 4.901914e-04	ci right 5.761192e-04	k: 601	n:1130000
Cons ci ratio: 1.326206e-01	ci left: 7.213239e-04	ci right 8.246255e-04	k: 872	n:1130000
KS ci ratio: 1.023568e-02	ci left: 1.142958e-01	ci right 1.154726e-01	k: 129818	n:1130000
VILL   1130000 perm   734 sec   (1539 perm/sec)   p_kst 1.148832e-01   p_cons 7.716814e-04   p_joint 5.318584e-04

Joint ci ratio: 1.346427e-01	ci left: 6.929512e-04	ci right 7.938238e-04	k: 846	n:1140000
Cons ci ratio: 1.316437e-01	ci left: 7.260232e-04	ci right 8.291720e-04	k: 885	n:1140000
KS ci ratio: 1.018963e-02	ci left: 1.143195e-01	ci right 1.154912e-01	k: 130991	n:1140000
VILL   1140000 perm   745 sec   (1530 perm/sec)   p_kst 1.149044e-01   p_cons 7.763158e-04   p_joint 7.421053e-04

Joint ci ratio: 1.337766e-01	ci left: 6.961697e-04	ci right 7.968070e-04	k: 857	n:1150000
Cons ci ratio: 1.312740e-01	ci left: 7.239147e-04	ci right 8.264526e-04	k: 890	n:1150000
KS ci ratio: 1.014450e-02	ci left: 1.143368e-01	ci right 1.155034e-01	k: 132157	n:1150000
VILL   1150000 perm   756 sec   (1521 perm/sec)   p_kst 1.149191e-01   p_cons 7.739130e-04   p_joint 7.452174e-04

Joint ci ratio: 1.332342e-01	ci left: 6.960012e-04	ci right 7.961739e-04	k: 864	n:1160000
Cons ci ratio: 1.304709e-01	ci left: 7.268465e-04	ci right 8.291210e-04	k: 901	n:1160000
KS ci ratio: 1.009966e-02	ci left: 1.143598e-01	ci right 1.155215e-01	k: 133330	n:1160000
VILL   1160000 perm   767 sec   (1513 perm/sec)   p_kst 1.149397e-01   p_cons 7.767241e-04   p_joint 7.448276e-04

Joint ci ratio: 1.323949e-01	ci left: 6.991418e-04	ci right 7.990829e-04	k: 875	n:1170000
Cons ci ratio: 1.298248e-01	ci left: 7.280760e-04	ci right 8.299771e-04	k: 910	n:1170000
KS ci ratio: 1.005765e-02	ci left: 1.143372e-01	ci right 1.154938e-01	k: 134450	n:1170000
VILL   1170000 perm   778 sec   (1504 perm/sec)   p_kst 1.149145e-01   p_cons 7.777778e-04   p_joint 7.478632e-04

Joint ci ratio: 1.317199e-01	ci left: 7.005921e-04	ci right 8.001899e-04	k: 884	n:1180000
Cons ci ratio: 1.290478e-01	ci left: 7.309261e-04	ci right 8.325670e-04	k: 921	n:1180000
KS ci ratio: 1.001336e-02	ci left: 1.143716e-01	ci right 1.155235e-01	k: 135637	n:1180000
VILL   1180000 perm   790 sec   (1494 perm/sec)   p_kst 1.149466e-01   p_cons 7.805085e-04   p_joint 7.491525e-04

Joint ci ratio: 1.314234e-01	ci left: 6.979554e-04	ci right 7.969376e-04	k: 888	n:1190000
Cons ci ratio: 1.288386e-01	ci left: 7.272235e-04	ci right 8.281730e-04	k: 924	n:1190000
KS ci ratio: 9.969611e-03	ci left: 1.144064e-01	ci right 1.155535e-01	k: 136825	n:1190000
VILL   1190000 perm   801 sec   (1486 perm/sec)   p_kst 1.149790e-01   p_cons 7.764706e-04   p_joint 7.462185e-04

Joint ci ratio: 1.367621e-01	ci left: 6.373713e-04	ci right 7.317324e-04	k: 820	n:1200000
Cons ci ratio: 1.284229e-01	ci left: 7.260024e-04	ci right 8.264324e-04	k: 930	n:1200000
KS ci ratio: 9.928301e-03	ci left: 1.144023e-01	ci right 1.155446e-01	k: 137967	n:1200000
VILL   1200000 perm   812 sec   (1477 perm/sec)   p_kst 1.149725e-01   p_cons 7.750000e-04   p_joint 6.833333e-04

Joint ci ratio: 1.112634e-01	ci left: 9.677643e-04	ci right 1.082580e-03	k: 1239	n:1210000
Cons ci ratio: 1.279429e-01	ci left: 7.256020e-04	ci right 8.255730e-04	k: 937	n:1210000
KS ci ratio: 1.003705e-02	ci left: 1.113850e-01	ci right 1.125094e-01	k: 135455	n:1210000
VILL   1210000 perm   824 sec   (1469 perm/sec)   p_kst 1.119463e-01   p_cons 7.743802e-04   p_joint 1.023967e-03

Joint ci ratio: 1.108175e-01	ci left: 9.678009e-04	ci right 1.082130e-03	k: 1249	n:1220000
Cons ci ratio: 1.273334e-01	ci left: 7.267959e-04	ci right 8.264184e-04	k: 946	n:1220000
KS ci ratio: 9.997171e-03	ci left: 1.113608e-01	ci right 1.124804e-01	k: 136542	n:1220000
VILL   1220000 perm   835 sec   (1461 perm/sec)   p_kst 1.119197e-01   p_cons 7.754098e-04   p_joint 1.023770e-03

Joint ci ratio: 1.105086e-01	ci left: 9.654661e-04	ci right 1.079181e-03	k: 1256	n:1230000
Cons ci ratio: 1.269320e-01	ci left: 7.256099e-04	ci right 8.247327e-04	k: 952	n:1230000
KS ci ratio: 9.957598e-03	ci left: 1.113402e-01	ci right 1.124552e-01	k: 137633	n:1230000
VILL   1230000 perm   846 sec   (1453 perm/sec)   p_kst 1.118967e-01   p_cons 7.739837e-04   p_joint 1.021138e-03

Joint ci ratio: 1.119904e-01	ci left: 9.318067e-04	ci right 1.043126e-03	k: 1223	n:1240000
Cons ci ratio: 1.263368e-01	ci left: 7.267864e-04	ci right 8.255695e-04	k: 961	n:1240000
KS ci ratio: 9.918491e-03	ci left: 1.113199e-01	ci right 1.124303e-01	k: 138724	n:1240000
VILL   1240000 perm   858 sec   (1446 perm/sec)   p_kst 1.118742e-01   p_cons 7.750000e-04   p_joint 9.862903e-04

Joint ci ratio: 1.116263e-01	ci left: 9.305732e-04	ci right 1.041360e-03	k: 1231	n:1250000
Cons ci ratio: 1.258147e-01	ci left: 7.271703e-04	ci right 8.255666e-04	k: 969	n:1250000
KS ci ratio: 9.877137e-03	ci left: 1.113542e-01	ci right 1.124603e-01	k: 139883	n:1250000
VILL   1250000 perm   870 sec   (1437 perm/sec)   p_kst 1.119064e-01   p_cons 7.752000e-04   p_joint 9.848000e-04

Joint ci ratio: 1.122209e-01	ci left: 9.131587e-04	ci right 1.022489e-03	k: 1218	n:1260000
Cons ci ratio: 1.254918e-01	ci left: 7.252425e-04	ci right 8.231075e-04	k: 974	n:1260000
KS ci ratio: 9.837631e-03	ci left: 1.113611e-01	ci right 1.124629e-01	k: 141008	n:1260000
VILL   1260000 perm   881 sec   (1430 perm/sec)   p_kst 1.119111e-01   p_cons 7.730159e-04   p_joint 9.666667e-04

Joint ci ratio: 1.127316e-01	ci left: 8.975503e-04	ci right 1.005534e-03	k: 1207	n:1270000
Cons ci ratio: 1.247897e-01	ci left: 7.279223e-04	ci right 8.255587e-04	k: 985	n:1270000
KS ci ratio: 9.799178e-03	ci left: 1.113562e-01	ci right 1.124535e-01	k: 142118	n:1270000
VILL   1270000 perm   893 sec   (1422 perm/sec)   p_kst 1.119039e-01   p_cons 7.755906e-04   p_joint 9.503937e-04

Joint ci ratio: 1.127320e-01	ci left: 8.905380e-04	ci right 9.976783e-04	k: 1207	n:1280000
Cons ci ratio: 1.244746e-01	ci left: 7.260198e-04	ci right 8.231370e-04	k: 990	n:1280000
KS ci ratio: 9.760827e-03	ci left: 1.113583e-01	ci right 1.124513e-01	k: 143237	n:1280000
VILL   1280000 perm   905 sec   (1414 perm/sec)   p_kst 1.119039e-01   p_cons 7.734375e-04   p_joint 9.429688e-04

Joint ci ratio: 1.124533e-01	ci left: 8.881547e-04	ci right 9.947266e-04	k: 1213	n:1290000
Cons ci ratio: 1.239132e-01	ci left: 7.271518e-04	ci right 8.239495e-04	k: 999	n:1290000
KS ci ratio: 9.723946e-03	ci left: 1.113395e-01	ci right 1.124282e-01	k: 144329	n:1290000
VILL   1290000 perm   917 sec   (1406 perm/sec)   p_kst 1.118829e-01   p_cons 7.744186e-04   p_joint 9.403101e-04

Joint ci ratio: 1.120388e-01	ci left: 8.880515e-04	ci right 9.941922e-04	k: 1222	n:1300000
Cons ci ratio: 1.235432e-01	ci left: 7.260308e-04	ci right 8.223696e-04	k: 1005	n:1300000
KS ci ratio: 9.685081e-03	ci left: 1.113701e-01	ci right 1.124547e-01	k: 145485	n:1300000
VILL   1300000 perm   930 sec   (1399 perm/sec)   p_kst 1.119115e-01   p_cons 7.730769e-04   p_joint 9.400000e-04

Joint ci ratio: 1.117651e-01	ci left: 8.857243e-04	ci right 9.913113e-04	k: 1228	n:1310000
Cons ci ratio: 1.232374e-01	ci left: 7.241876e-04	ci right 8.200266e-04	k: 1010	n:1310000
KS ci ratio: 9.648753e-03	ci left: 1.113576e-01	ci right 1.124380e-01	k: 146585	n:1310000
VILL   1310000 perm   942 sec   (1391 perm/sec)   p_kst 1.118969e-01   p_cons 7.709924e-04   p_joint 9.374046e-04

Joint ci ratio: 1.115839e-01	ci left: 8.819599e-04	ci right 9.869164e-04	k: 1232	n:1320000
Cons ci ratio: 1.227527e-01	ci left: 7.245755e-04	ci right 8.200612e-04	k: 1018	n:1320000
KS ci ratio: 9.613014e-03	ci left: 1.113415e-01	ci right 1.124178e-01	k: 147680	n:1320000
VILL   1320000 perm   954 sec   (1384 perm/sec)   p_kst 1.118788e-01   p_cons 7.712121e-04   p_joint 9.333333e-04

Joint ci ratio: 1.129213e-01	ci left: 8.541356e-04	ci right 9.570804e-04	k: 1203	n:1330000
Cons ci ratio: 1.222737e-01	ci left: 7.249582e-04	ci right 8.200946e-04	k: 1026	n:1330000
KS ci ratio: 9.577814e-03	ci left: 1.113227e-01	ci right 1.123948e-01	k: 148771	n:1330000
VILL   1330000 perm   966 sec   (1377 perm/sec)   p_kst 1.118579e-01   p_cons 7.714286e-04   p_joint 9.045113e-04

Joint ci ratio: 1.123627e-01	ci left: 8.564644e-04	ci right 9.591453e-04	k: 1215	n:1340000
Cons ci ratio: 1.219181e-01	ci left: 7.238889e-04	ci right 8.185888e-04	k: 1032	n:1340000
KS ci ratio: 9.540811e-03	ci left: 1.113496e-01	ci right 1.124178e-01	k: 149923	n:1340000
VILL   1340000 perm   979 sec   (1369 perm/sec)   p_kst 1.118828e-01   p_cons 7.701493e-04   p_joint 9.067164e-04

Joint ci ratio: 1.121785e-01	ci left: 8.529999e-04	ci right 9.550868e-04	k: 1219	n:1350000
Cons ci ratio: 1.216829e-01	ci left: 7.213994e-04	ci right 8.155785e-04	k: 1036	n:1350000
KS ci ratio: 9.505829e-03	ci left: 1.113428e-01	ci right 1.124070e-01	k: 151030	n:1350000
VILL   1350000 perm   991 sec   (1362 perm/sec)   p_kst 1.118741e-01   p_cons 7.674074e-04   p_joint 9.029630e-04

Joint ci ratio: 1.125953e-01	ci left: 8.402959e-04	ci right 9.412608e-04	k: 1210	n:1360000
Cons ci ratio: 1.213325e-01	ci left: 7.203727e-04	ci right 8.141274e-04	k: 1042	n:1360000
KS ci ratio: 9.470457e-03	ci left: 1.113523e-01	ci right 1.124126e-01	k: 152159	n:1360000
VILL   1360000 perm   1003 sec   (1355 perm/sec)   p_kst 1.118816e-01   p_cons 7.661765e-04   p_joint 8.897059e-04

Joint ci ratio: 1.123176e-01	ci left: 8.384187e-04	ci right 9.388931e-04	k: 1216	n:1370000
Cons ci ratio: 1.209274e-01	ci left: 7.200691e-04	ci right 8.134491e-04	k: 1049	n:1370000
KS ci ratio: 9.436760e-03	ci left: 1.113347e-01	ci right 1.123910e-01	k: 153251	n:1370000
VILL   1370000 perm   1016 sec   (1349 perm/sec)   p_kst 1.118620e-01   p_cons 7.656934e-04   p_joint 8.875912e-04

Joint ci ratio: 1.120418e-01	ci left: 8.365690e-04	ci right 9.365593e-04	k: 1222	n:1380000
Cons ci ratio: 1.206406e-01	ci left: 7.183649e-04	ci right 8.112872e-04	k: 1054	n:1380000
KS ci ratio: 9.402871e-03	ci left: 1.113289e-01	ci right 1.123814e-01	k: 154359	n:1380000
VILL   1380000 perm   1029 sec   (1342 perm/sec)   p_kst 1.118543e-01   p_cons 7.637681e-04   p_joint 8.855072e-04

Joint ci ratio: 1.115412e-01	ci left: 8.382429e-04	ci right 9.379563e-04	k: 1233	n:1390000
Cons ci ratio: 1.202424e-01	ci left: 7.180811e-04	ci right 8.106382e-04	k: 1061	n:1390000
KS ci ratio: 9.368734e-03	ci left: 1.113362e-01	ci right 1.123849e-01	k: 155485	n:1390000
VILL   1390000 perm   1041 sec   (1335 perm/sec)   p_kst 1.118597e-01   p_cons 7.633094e-04   p_joint 8.870504e-04

Joint ci ratio: 1.113611e-01	ci left: 8.350329e-04	ci right 9.341935e-04	k: 1237	n:1400000
Cons ci ratio: 1.200731e-01	ci left: 7.150303e-04	ci right 8.070552e-04	k: 1064	n:1400000
KS ci ratio: 9.335637e-03	ci left: 1.113291e-01	ci right 1.123740e-01	k: 156591	n:1400000
VILL   1400000 perm   1054 sec   (1328 perm/sec)   p_kst 1.118507e-01   p_cons 7.600000e-04   p_joint 8.835714e-04

Joint ci ratio: 1.117233e-01	ci left: 8.235949e-04	ci right 9.217363e-04	k: 1229	n:1410000
Cons ci ratio: 1.194577e-01	ci left: 7.175269e-04	ci right 8.093664e-04	k: 1075	n:1410000
KS ci ratio: 9.302158e-03	ci left: 1.113376e-01	ci right 1.123788e-01	k: 157719	n:1410000
VILL   1410000 perm   1067 sec   (1322 perm/sec)   p_kst 1.118574e-01   p_cons 7.624113e-04   p_joint 8.716312e-04

Joint ci ratio: 1.129246e-01	ci left: 7.999990e-04	ci right 8.964218e-04	k: 1203	n:1420000
Cons ci ratio: 1.189063e-01	ci left: 7.193063e-04	ci right 8.109187e-04	k: 1085	n:1420000
KS ci ratio: 9.269727e-03	ci left: 1.113313e-01	ci right 1.123688e-01	k: 158826	n:1420000
VILL   1420000 perm   1080 sec   (1315 perm/sec)   p_kst 1.118493e-01   p_cons 7.640845e-04   p_joint 8.471831e-04

Joint ci ratio: 1.125048e-01	ci left: 8.005208e-04	ci right 8.966242e-04	k: 1212	n:1430000
Cons ci ratio: 1.182546e-01	ci left: 7.224189e-04	ci right 8.138883e-04	k: 1097	n:1430000
KS ci ratio: 9.236332e-03	ci left: 1.113530e-01	ci right 1.123870e-01	k: 159973	n:1430000
VILL   1430000 perm   1093 sec   (1309 perm/sec)   p_kst 1.118692e-01   p_cons 7.671329e-04   p_joint 8.475524e-04

Joint ci ratio: 1.146538e-01	ci left: 7.645985e-04	ci right 8.582613e-04	k: 1167	n:1440000
Cons ci ratio: 1.174019e-01	ci left: 7.281859e-04	ci right 8.196745e-04	k: 1113	n:1440000
KS ci ratio: 9.203713e-03	ci left: 1.113654e-01	ci right 1.123958e-01	k: 161107	n:1440000
VILL   1440000 perm   1106 sec   (1302 perm/sec)   p_kst 1.118799e-01   p_cons 7.729167e-04   p_joint 8.104167e-04

Joint ci ratio: 1.153981e-01	ci left: 7.492779e-04	ci right 8.417003e-04	k: 1152	n:1450000
Cons ci ratio: 1.172444e-01	ci left: 7.251721e-04	ci right 8.161513e-04	k: 1116	n:1450000
KS ci ratio: 9.173284e-03	ci left: 1.113378e-01	ci right 1.123645e-01	k: 162183	n:1450000
VILL   1450000 perm   1119 sec   (1296 perm/sec)   p_kst 1.118503e-01   p_cons 7.696552e-04   p_joint 7.944828e-04

Joint ci ratio: 1.168267e-01	ci left: 7.255242e-04	ci right 8.162010e-04	k: 1124	n:1460000
Cons ci ratio: 1.168787e-01	ci left: 7.248593e-04	ci right 8.154961e-04	k: 1123	n:1460000
KS ci ratio: 9.142020e-03	ci left: 1.113351e-01	ci right 1.123582e-01	k: 163295	n:1460000
VILL   1460000 perm   1132 sec   (1289 perm/sec)   p_kst 1.118459e-01   p_cons 7.691781e-04   p_joint 7.698630e-04

Joint ci ratio: 1.163622e-01	ci left: 7.265326e-04	ci right 8.169496e-04	k: 1133	n:1470000
Cons ci ratio: 1.165681e-01	ci left: 7.238907e-04	ci right 8.141493e-04	k: 1129	n:1470000
KS ci ratio: 9.112103e-03	ci left: 1.113100e-01	ci right 1.123296e-01	k: 164374	n:1470000
VILL   1470000 perm   1146 sec   (1283 perm/sec)   p_kst 1.118190e-01   p_cons 7.680272e-04   p_joint 7.707483e-04

Joint ci ratio: 1.157512e-01	ci left: 7.294964e-04	ci right 8.197729e-04	k: 1145	n:1480000
Cons ci ratio: 1.162599e-01	ci left: 7.229356e-04	ci right 8.128204e-04	k: 1135	n:1480000
KS ci ratio: 9.081953e-03	ci left: 1.112968e-01	ci right 1.123128e-01	k: 165470	n:1480000
VILL   1480000 perm   1160 sec   (1276 perm/sec)   p_kst 1.118041e-01   p_cons 7.668919e-04   p_joint 7.736486e-04

Joint ci ratio: 1.154996e-01	ci left: 7.278591e-04	ci right 8.177239e-04	k: 1150	n:1490000
Cons ci ratio: 1.156505e-01	ci left: 7.259038e-04	ci right 8.156523e-04	k: 1147	n:1490000
KS ci ratio: 9.052344e-03	ci left: 1.112784e-01	ci right 1.122909e-01	k: 166558	n:1490000
VILL   1490000 perm   1173 sec   (1270 perm/sec)   p_kst 1.117839e-01   p_cons 7.697987e-04   p_joint 7.718121e-04

Joint ci ratio: 1.149515e-01	ci left: 7.301287e-04	ci right 8.198169e-04	k: 1161	n:1500000
Cons ci ratio: 1.152496e-01	ci left: 7.262438e-04	ci right 8.157019e-04	k: 1155	n:1500000
KS ci ratio: 9.022569e-03	ci left: 1.112702e-01	ci right 1.122793e-01	k: 167661	n:1500000
VILL   1500000 perm   1187 sec   (1264 perm/sec)   p_kst 1.117740e-01   p_cons 7.700000e-04   p_joint 7.740000e-04

Joint ci ratio: 1.146559e-01	ci left: 7.291528e-04	ci right 8.184752e-04	k: 1167	n:1510000
Cons ci ratio: 1.148529e-01	ci left: 7.265798e-04	ci right 8.157503e-04	k: 1163	n:1510000
KS ci ratio: 8.992366e-03	ci left: 1.112780e-01	ci right 1.122838e-01	k: 168788	n:1510000
VILL   1510000 perm   1200 sec   (1258 perm/sec)   p_kst 1.117801e-01   p_cons 7.701987e-04   p_joint 7.728477e-04

Joint ci ratio: 1.143626e-01	ci left: 7.281900e-04	ci right 8.171509e-04	k: 1173	n:1520000
Cons ci ratio: 1.144114e-01	ci left: 7.275510e-04	ci right 8.164742e-04	k: 1172	n:1520000
KS ci ratio: 8.962137e-03	ci left: 1.112929e-01	ci right 1.122954e-01	k: 169926	n:1520000
VILL   1520000 perm   1214 sec   (1252 perm/sec)   p_kst 1.117934e-01   p_cons 7.710526e-04   p_joint 7.717105e-04

Joint ci ratio: 1.145094e-01	ci left: 7.215258e-04	ci right 8.097934e-04	k: 1170	n:1530000
Cons ci ratio: 1.141684e-01	ci left: 7.259702e-04	ci right 8.144992e-04	k: 1177	n:1530000
KS ci ratio: 8.933917e-03	ci left: 1.112698e-01	ci right 1.122689e-01	k: 171006	n:1530000
VILL   1530000 perm   1228 sec   (1246 perm/sec)   p_kst 1.117686e-01   p_cons 7.692810e-04   p_joint 7.647059e-04

Joint ci ratio: 1.146568e-01	ci left: 7.149482e-04	ci right 8.025313e-04	k: 1167	n:1540000
Cons ci ratio: 1.139752e-01	ci left: 7.237794e-04	ci right 8.118818e-04	k: 1181	n:1540000
KS ci ratio: 8.903603e-03	ci left: 1.112995e-01	ci right 1.122955e-01	k: 172167	n:1540000
VILL   1540000 perm   1242 sec   (1240 perm/sec)   p_kst 1.117968e-01   p_cons 7.668831e-04   p_joint 7.577922e-04

Joint ci ratio: 1.155013e-01	ci left: 6.996833e-04	ci right 7.860707e-04	k: 1150	n:1550000
Cons ci ratio: 1.135437e-01	ci left: 7.247511e-04	ci right 8.126154e-04	k: 1190	n:1550000
KS ci ratio: 8.874661e-03	ci left: 1.113050e-01	ci right 1.122978e-01	k: 173291	n:1550000
VILL   1550000 perm   1256 sec   (1234 perm/sec)   p_kst 1.118006e-01   p_cons 7.677419e-04   p_joint 7.419355e-04

Joint ci ratio: 1.151020e-01	ci left: 7.001785e-04	ci right 7.863078e-04	k: 1158	n:1560000
Cons ci ratio: 1.130229e-01	ci left: 7.269568e-04	ci right 8.146573e-04	k: 1201	n:1560000
KS ci ratio: 8.846285e-03	ci left: 1.113040e-01	ci right 1.122936e-01	k: 174405	n:1560000
VILL   1560000 perm   1271 sec   (1227 perm/sec)   p_kst 1.117981e-01   p_cons 7.698718e-04   p_joint 7.423077e-04

Joint ci ratio: 1.146085e-01	ci left: 7.019052e-04	ci right 7.878518e-04	k: 1168	n:1570000
Cons ci ratio: 1.125556e-01	ci left: 7.285163e-04	ci right 8.160174e-04	k: 1211	n:1570000
KS ci ratio: 8.818520e-03	ci left: 1.112954e-01	ci right 1.122818e-01	k: 175507	n:1570000
VILL   1570000 perm   1285 sec   (1222 perm/sec)   p_kst 1.117879e-01   p_cons 7.713376e-04   p_joint 7.439490e-04

Joint ci ratio: 1.142183e-01	ci left: 7.023812e-04	ci right 7.880735e-04	k: 1176	n:1580000
Cons ci ratio: 1.119108e-01	ci left: 7.325175e-04	ci right 8.199620e-04	k: 1225	n:1580000
KS ci ratio: 8.790482e-03	ci left: 1.112989e-01	ci right 1.122822e-01	k: 176628	n:1580000
VILL   1580000 perm   1299 sec   (1216 perm/sec)   p_kst 1.117899e-01   p_cons 7.753165e-04   p_joint 7.443038e-04

Joint ci ratio: 1.146091e-01	ci left: 6.930760e-04	ci right 7.779419e-04	k: 1168	n:1590000
Cons ci ratio: 1.116381e-01	ci left: 7.315786e-04	ci right 8.186841e-04	k: 1231	n:1590000
KS ci ratio: 8.761516e-03	ci left: 1.113294e-01	ci right 1.123097e-01	k: 177792	n:1590000
VILL   1590000 perm   1313 sec   (1211 perm/sec)   p_kst 1.118189e-01   p_cons 7.742138e-04   p_joint 7.345912e-04

Joint ci ratio: 1.140251e-01	ci left: 6.960299e-04	ci right 7.807941e-04	k: 1180	n:1600000
Cons ci ratio: 1.112325e-01	ci left: 7.324744e-04	ci right 8.193490e-04	k: 1240	n:1600000
KS ci ratio: 8.734428e-03	ci left: 1.113233e-01	ci right 1.123006e-01	k: 178898	n:1600000
VILL   1600000 perm   1328 sec   (1205 perm/sec)   p_kst 1.118113e-01   p_cons 7.750000e-04   p_joint 7.375000e-04

Joint ci ratio: 1.137846e-01	ci left: 6.947238e-04	ci right 7.791385e-04	k: 1185	n:1610000
Cons ci ratio: 1.108313e-01	ci left: 7.333597e-04	ci right 8.200051e-04	k: 1249	n:1610000
KS ci ratio: 8.706774e-03	ci left: 1.113359e-01	ci right 1.123102e-01	k: 180034	n:1610000
VILL   1610000 perm   1342 sec   (1199 perm/sec)   p_kst 1.118224e-01   p_cons 7.757764e-04   p_joint 7.360248e-04

Joint ci ratio: 1.132132e-01	ci left: 6.976326e-04	ci right 7.819465e-04	k: 1197	n:1620000
Cons ci ratio: 1.102156e-01	ci left: 7.372360e-04	ci right 8.238240e-04	k: 1263	n:1620000
KS ci ratio: 8.681242e-03	ci left: 1.113059e-01	ci right 1.122770e-01	k: 181101	n:1620000
VILL   1620000 perm   1357 sec   (1194 perm/sec)   p_kst 1.117907e-01   p_cons 7.796296e-04   p_joint 7.388889e-04

Joint ci ratio: 1.132607e-01	ci left: 6.927564e-04	ci right 7.765186e-04	k: 1196	n:1630000
Cons ci ratio: 1.097821e-01	ci left: 7.386793e-04	ci right 8.250735e-04	k: 1273	n:1630000
KS ci ratio: 8.654997e-03	ci left: 1.112976e-01	ci right 1.122657e-01	k: 182203	n:1630000
VILL   1630000 perm   1372 sec   (1188 perm/sec)   p_kst 1.117810e-01   p_cons 7.809816e-04   p_joint 7.337423e-04

Joint ci ratio: 1.128373e-01	ci left: 6.938650e-04	ci right 7.774266e-04	k: 1205	n:1640000
Cons ci ratio: 1.094390e-01	ci left: 7.389195e-04	ci right 8.250543e-04	k: 1281	n:1640000
KS ci ratio: 8.628167e-03	ci left: 1.113084e-01	ci right 1.122735e-01	k: 183336	n:1640000
VILL   1640000 perm   1387 sec   (1183 perm/sec)   p_kst 1.117902e-01   p_cons 7.810976e-04   p_joint 7.347561e-04

Joint ci ratio: 1.124185e-01	ci left: 6.949606e-04	ci right 7.783230e-04	k: 1214	n:1650000
Cons ci ratio: 1.090568e-01	ci left: 7.397467e-04	ci right 8.256575e-04	k: 1290	n:1650000
KS ci ratio: 8.602688e-03	ci left: 1.112935e-01	ci right 1.122557e-01	k: 184427	n:1650000
VILL   1650000 perm   1402 sec   (1177 perm/sec)   p_kst 1.117739e-01   p_cons 7.818182e-04   p_joint 7.357576e-04

Joint ci ratio: 1.122801e-01	ci left: 6.925305e-04	ci right 7.754924e-04	k: 1217	n:1660000
Cons ci ratio: 1.088884e-01	ci left: 7.376343e-04	ci right 8.231590e-04	k: 1294	n:1660000
KS ci ratio: 8.577953e-03	ci left: 1.112669e-01	ci right 1.122260e-01	k: 185498	n:1660000
VILL   1660000 perm   1417 sec   (1171 perm/sec)   p_kst 1.117458e-01   p_cons 7.795181e-04   p_joint 7.331325e-04

Joint ci ratio: 1.119589e-01	ci left: 6.924577e-04	ci right 7.751578e-04	k: 1224	n:1670000
Cons ci ratio: 1.086789e-01	ci left: 7.361298e-04	ci right 8.213054e-04	k: 1299	n:1670000
KS ci ratio: 8.553070e-03	ci left: 1.112489e-01	ci right 1.122051e-01	k: 186583	n:1670000
VILL   1670000 perm   1432 sec   (1167 perm/sec)   p_kst 1.117263e-01   p_cons 7.778443e-04   p_joint 7.329341e-04

Joint ci ratio: 1.115498e-01	ci left: 6.935433e-04	ci right 7.760506e-04	k: 1233	n:1680000
Cons ci ratio: 1.084290e-01	ci left: 7.352226e-04	ci right 8.200851e-04	k: 1305	n:1680000
KS ci ratio: 8.527660e-03	ci left: 1.112484e-01	ci right 1.122017e-01	k: 187697	n:1680000
VILL   1680000 perm   1446 sec   (1162 perm/sec)   p_kst 1.117244e-01   p_cons 7.767857e-04   p_joint 7.339286e-04

Joint ci ratio: 1.111899e-01	ci left: 6.940414e-04	ci right 7.763241e-04	k: 1241	n:1690000
Cons ci ratio: 1.080573e-01	ci left: 7.360534e-04	ci right 8.207020e-04	k: 1314	n:1690000
KS ci ratio: 8.502019e-03	ci left: 1.112585e-01	ci right 1.122091e-01	k: 188829	n:1690000
VILL   1690000 perm   1461 sec   (1156 perm/sec)   p_kst 1.117331e-01   p_cons 7.775148e-04   p_joint 7.343195e-04

Joint ci ratio: 1.244238e-01	ci left: 5.472170e-04	ci right 6.203841e-04	k: 991	n:1700000
Cons ci ratio: 1.078525e-01	ci left: 7.345854e-04	ci right 8.188950e-04	k: 1319	n:1700000
KS ci ratio: 8.477864e-03	ci left: 1.112392e-01	ci right 1.121868e-01	k: 189911	n:1700000
VILL   1700000 perm   1476 sec   (1151 perm/sec)   p_kst 1.117124e-01   p_cons 7.758824e-04   p_joint 5.829412e-04

Joint ci ratio: 1.241737e-01	ci left: 5.462834e-04	ci right 6.191680e-04	k: 995	n:1710000
Cons ci ratio: 1.073655e-01	ci left: 7.371183e-04	ci right 8.213124e-04	k: 1331	n:1710000
KS ci ratio: 8.454511e-03	ci left: 1.112061e-01	ci right 1.121508e-01	k: 190969	n:1710000
VILL   1710000 perm   1492 sec   (1146 perm/sec)   p_kst 1.116778e-01   p_cons 7.783626e-04   p_joint 5.818713e-04

Joint ci ratio: 1.236780e-01	ci left: 5.476143e-04	ci right 6.203634e-04	k: 1003	n:1720000
Cons ci ratio: 1.070045e-01	ci left: 7.379251e-04	ci right 8.219101e-04	k: 1340	n:1720000
KS ci ratio: 8.430041e-03	ci left: 1.112041e-01	ci right 1.121461e-01	k: 192080	n:1720000
VILL   1720000 perm   1507 sec   (1141 perm/sec)   p_kst 1.116744e-01   p_cons 7.790698e-04   p_joint 5.831395e-04

Joint ci ratio: 1.231881e-01	ci left: 5.489304e-04	ci right 6.215445e-04	k: 1011	n:1730000
Cons ci ratio: 1.062932e-01	ci left: 7.437868e-04	ci right 8.278411e-04	k: 1358	n:1730000
KS ci ratio: 8.406028e-03	ci left: 1.111964e-01	ci right 1.121356e-01	k: 193181	n:1730000
VILL   1730000 perm   1523 sec   (1136 perm/sec)   p_kst 1.116653e-01   p_cons 7.849711e-04   p_joint 5.843931e-04

Joint ci ratio: 1.228849e-01	ci left: 5.485608e-04	ci right 6.209344e-04	k: 1016	n:1740000
Cons ci ratio: 1.060594e-01	ci left: 7.428689e-04	ci right 8.266232e-04	k: 1364	n:1740000
KS ci ratio: 8.382776e-03	ci left: 1.111755e-01	ci right 1.121120e-01	k: 194259	n:1740000
VILL   1740000 perm   1539 sec   (1131 perm/sec)   p_kst 1.116431e-01   p_cons 7.839080e-04   p_joint 5.839080e-04

Joint ci ratio: 1.226440e-01	ci left: 5.476416e-04	ci right 6.197421e-04	k: 1020	n:1750000
Cons ci ratio: 1.059045e-01	ci left: 7.408490e-04	ci right 8.242460e-04	k: 1368	n:1750000
KS ci ratio: 8.357983e-03	ci left: 1.111960e-01	ci right 1.121298e-01	k: 195409	n:1750000
VILL   1750000 perm   1555 sec   (1126 perm/sec)   p_kst 1.116623e-01   p_cons 7.817143e-04   p_joint 5.828571e-04

Joint ci ratio: 1.228249e-01	ci left: 5.428777e-04	ci right 6.144640e-04	k: 1017	n:1760000
Cons ci ratio: 1.056732e-01	ci left: 7.399585e-04	ci right 8.230620e-04	k: 1374	n:1760000
KS ci ratio: 8.335175e-03	ci left: 1.111743e-01	ci right 1.121054e-01	k: 196485	n:1760000
VILL   1760000 perm   1570 sec   (1121 perm/sec)   p_kst 1.116392e-01   p_cons 7.806818e-04   p_joint 5.778409e-04

Joint ci ratio: 9.975016e-02	ci left: 8.282588e-04	ci right 9.157605e-04	k: 1542	n:1770000
Cons ci ratio: 1.051391e-01	ci left: 7.434791e-04	ci right 8.265299e-04	k: 1388	n:1770000
KS ci ratio: 8.311511e-03	ci left: 1.111776e-01	ci right 1.121061e-01	k: 197605	n:1770000
VILL   1770000 perm   1586 sec   (1116 perm/sec)   p_kst 1.116412e-01   p_cons 7.841808e-04   p_joint 8.711864e-04

Joint ci ratio: 9.920493e-02	ci left: 8.329187e-04	ci right 9.204037e-04	k: 1559	n:1780000
Cons ci ratio: 1.049128e-01	ci left: 7.425845e-04	ci right 8.253458e-04	k: 1394	n:1780000
KS ci ratio: 8.288070e-03	ci left: 1.111804e-01	ci right 1.121063e-01	k: 198724	n:1780000
VILL   1780000 perm   1601 sec   (1112 perm/sec)   p_kst 1.116427e-01   p_cons 7.831461e-04   p_joint 8.758427e-04

Joint ci ratio: 9.879402e-02	ci left: 8.353484e-04	ci right 9.227041e-04	k: 1572	n:1790000
Cons ci ratio: 1.046133e-01	ci left: 7.427881e-04	ci right 8.253213e-04	k: 1402	n:1790000
KS ci ratio: 8.263919e-03	ci left: 1.112049e-01	ci right 1.121282e-01	k: 199882	n:1790000
VILL   1790000 perm   1617 sec   (1107 perm/sec)   p_kst 1.116659e-01   p_cons 7.832402e-04   p_joint 8.782123e-04

Joint ci ratio: 7.689604e-02	ci left: 1.386219e-03	ci right 1.497617e-03	k: 2594	n:1800000
Cons ci ratio: 9.879427e-02	ci left: 8.307074e-04	ci right 9.175780e-04	k: 1572	n:1800000
KS ci ratio: 8.240301e-03	ci left: 1.112213e-01	ci right 1.121421e-01	k: 201026	n:1800000
VILL   1800000 perm   1633 sec   (1102 perm/sec)   p_kst 1.116811e-01   p_cons 8.733333e-04   p_joint 1.441111e-03

Outputting figure to mutsig2_images.part000000000189/VILL.5_2647_1800000_0.11168_0.00087333_0.0014411.png
                gene_name: VILL
               theta_stop: 0.099 
                    nperm: 1800000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.00087 
      ci_cons_bounds_left: 0.00083 
     ci_cons_bounds_right: 0.00092 
                  p_joint: 0.0014 
     ci_joint_bounds_left: 0.0014 
    ci_joint_bounds_right: 0.0015 

Current progress: 32 percent done.
VLDLR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.731777e-02	ci left: 3.972498e-01	ci right 4.166044e-01	k: 4069	n:10000
Cons ci ratio: 3.406402e-02	ci left: 5.599267e-01	ci right 5.794327e-01	k: 5697	n:10000
KS ci ratio: 6.059909e-02	ci left: 2.859734e-01	ci right 3.039462e-01	k: 2949	n:10000
VLDLR   10000 perm   2 sec   (5475 perm/sec)   p_kst 2.949000e-01   p_cons 5.697000e-01   p_joint 4.069000e-01

Outputting figure to mutsig2_images.part000000000189/VLDLR.5_2698_10000_0.2949_0.5697_0.4069.png
                gene_name: VLDLR
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 34 percent done.
VTCN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.128764e-02	ci left: 4.641722e-01	ci right 4.838429e-01	k: 4740	n:10000
Cons ci ratio: 1.797425e-02	ci left: 8.187299e-01	ci right 8.336795e-01	k: 8263	n:10000
KS ci ratio: 5.531683e-02	ci left: 3.249540e-01	ci right 3.435426e-01	k: 3342	n:10000
VTCN1   10000 perm   2 sec   (5970 perm/sec)   p_kst 3.342000e-01   p_cons 8.263000e-01   p_joint 4.740000e-01

Outputting figure to mutsig2_images.part000000000189/VTCN1.5_869_10000_0.3342_0.8263_0.474.png
                gene_name: VTCN1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 36 percent done.
VWA2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.327743e-02	ci left: 7.305765e-01	ci right 7.478839e-01	k: 7393	n:10000
Cons ci ratio: 5.285046e-02	ci left: 3.454159e-01	ci right 3.642687e-01	k: 3548	n:10000
KS ci ratio: 1.477842e-02	ci left: 8.689718e-01	ci right 8.820086e-01	k: 8756	n:10000
VWA2   10000 perm   2 sec   (5643 perm/sec)   p_kst 8.756000e-01   p_cons 3.548000e-01   p_joint 7.393000e-01

Outputting figure to mutsig2_images.part000000000189/VWA2.5_2222_10000_0.8756_0.3548_0.7393.png
                gene_name: VWA2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 38 percent done.
VWA3A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.802223e-02	ci left: 2.407462e-01	ci right 2.578001e-01	k: 2492	n:10000
Cons ci ratio: 3.447565e-02	ci left: 5.540129e-01	ci right 5.735499e-01	k: 5638	n:10000
KS ci ratio: 9.237174e-02	ci left: 1.455058e-01	ci right 1.596972e-01	k: 1525	n:10000
VWA3A   10000 perm   2 sec   (4730 perm/sec)   p_kst 1.525000e-01   p_cons 5.638000e-01   p_joint 2.492000e-01

Outputting figure to mutsig2_images.part000000000189/VWA3A.5_3687_10000_0.1525_0.5638_0.2492.png
                gene_name: VWA3A
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 39 percent done.
VIL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.393597e-02	ci left: 7.195667e-01	ci right 7.371001e-01	k: 7284	n:10000
KS ci ratio: 5.290849e-03	ci left: 9.794135e-01	ci right 9.847004e-01	k: 9822	n:10000
VIL1   10000 perm   2 sec   (5378 perm/sec)   p_kst 9.822000e-01   p_cons 7.284000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VIL1.4_2560_10000_0.9822_0.7284_1.png
                gene_name: VIL1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
VIPAR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.662888e-02	ci left: 5.239639e-01	ci right 5.436164e-01	k: 5338	n:10000
Cons ci ratio: 2.527067e-02	ci left: 6.973649e-01	ci right 7.153147e-01	k: 7064	n:10000
KS ci ratio: 5.831909e-02	ci left: 3.020326e-01	ci right 3.202776e-01	k: 3111	n:10000
VIPAR   10000 perm   2 sec   (5687 perm/sec)   p_kst 3.111000e-01   p_cons 7.064000e-01   p_joint 5.338000e-01

Outputting figure to mutsig2_images.part000000000189/VIPAR.4_1558_10000_0.3111_0.7064_0.5338.png
                gene_name: VIPAR
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 43 percent done.
VIPR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.956251e-01	ci left: 3.481398e-02	ci right 4.245779e-02	k: 385	n:10000
Cons ci ratio: 1.661901e-01	ci left: 4.830553e-02	ci right 5.715732e-02	k: 526	n:10000
KS ci ratio: 1.428763e-01	ci left: 6.497832e-02	ci right 7.507390e-02	k: 699	n:10000
VIPR1   10000 perm   2 sec   (6216 perm/sec)   p_kst 6.990000e-02   p_cons 5.260000e-02   p_joint 3.850000e-02

Joint ci ratio: 1.589819e-01	ci left: 2.715054e-02	ci right 3.188756e-02	k: 589	n:20000
Cons ci ratio: 1.173406e-01	ci left: 4.974084e-02	ci right 5.598996e-02	k: 1056	n:20000
KS ci ratio: 1.022134e-01	ci left: 6.498828e-02	ci right 7.203779e-02	k: 1369	n:20000
VIPR1   20000 perm   4 sec   (5349 perm/sec)   p_kst 6.845000e-02   p_cons 5.280000e-02   p_joint 2.945000e-02

Joint ci ratio: 9.087531e-02	ci left: 5.574003e-02	ci right 6.107923e-02	k: 1751	n:30000
Cons ci ratio: 9.676305e-02	ci left: 4.935155e-02	ci right 5.440235e-02	k: 1555	n:30000
KS ci ratio: 8.264018e-02	ci left: 6.687632e-02	ci right 7.267400e-02	k: 2092	n:30000
VIPR1   30000 perm   6 sec   (5139 perm/sec)   p_kst 6.973333e-02   p_cons 5.183333e-02   p_joint 5.836667e-02

Outputting figure to mutsig2_images.part000000000189/VIPR1.4_1426_30000_0.069733_0.051833_0.058367.png
                gene_name: VIPR1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.058 
     ci_joint_bounds_left: 0.056 
    ci_joint_bounds_right: 0.061 

Current progress: 45 percent done.
VN1R1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.803680e-02	ci left: 8.177134e-01	ci right 8.326966e-01	k: 8253	n:10000
Cons ci ratio: 3.972278e-02	ci left: 4.834542e-01	ci right 5.031497e-01	k: 4933	n:10000
KS ci ratio: 1.604756e-02	ci left: 8.494749e-01	ci right 8.633167e-01	k: 8565	n:10000
VN1R1   10000 perm   2 sec   (6181 perm/sec)   p_kst 8.565000e-01   p_cons 4.933000e-01   p_joint 8.253000e-01

Outputting figure to mutsig2_images.part000000000189/VN1R1.4_1066_10000_0.8565_0.4933_0.8253.png
                gene_name: VN1R1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 46 percent done.
VPS16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.315017e-02	ci left: 8.928248e-01	ci right 9.047417e-01	k: 8989	n:10000
KS ci ratio: 2.208869e-02	ci left: 7.504927e-01	ci right 7.673562e-01	k: 7590	n:10000
VPS16   10000 perm   2 sec   (5570 perm/sec)   p_kst 7.590000e-01   p_cons 8.989000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VPS16.4_2616_10000_0.759_0.8989_1.png
                gene_name: VPS16
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
VPS36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.283885e-02	ci left: 1.442309e-01	ci right 1.583729e-01	k: 1512	n:10000
Cons ci ratio: 1.905420e-02	ci left: 8.010545e-01	ci right 8.165651e-01	k: 8089	n:10000
KS ci ratio: 1.426573e-01	ci left: 6.517166e-02	ci right 7.528044e-02	k: 701	n:10000
VPS36   10000 perm   2 sec   (4993 perm/sec)   p_kst 7.010000e-02   p_cons 8.089000e-01   p_joint 1.512000e-01

Joint ci ratio: 7.657341e-02	ci left: 1.113964e-01	ci right 1.203156e-01	k: 2316	n:20000
Cons ci ratio: 1.329409e-02	ci left: 8.075258e-01	ci right 8.183830e-01	k: 16260	n:20000
KS ci ratio: 1.000734e-01	ci left: 6.767355e-02	ci right 7.485170e-02	k: 1424	n:20000
VPS36   20000 perm   4 sec   (4777 perm/sec)   p_kst 7.120000e-02   p_cons 8.130000e-01   p_joint 1.158000e-01

Joint ci ratio: 5.606159e-02	ci left: 1.361907e-01	ci right 1.440791e-01	k: 4203	n:30000
Cons ci ratio: 1.075442e-02	ci left: 8.113663e-01	ci right 8.201725e-01	k: 24474	n:30000
KS ci ratio: 8.194780e-02	ci left: 6.795529e-02	ci right 7.379481e-02	k: 2125	n:30000
VPS36   30000 perm   6 sec   (4664 perm/sec)   p_kst 7.083333e-02   p_cons 8.158000e-01   p_joint 1.401000e-01

Outputting figure to mutsig2_images.part000000000189/VPS36.4_1217_30000_0.070833_0.8158_0.1401.png
                gene_name: VPS36
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.068 
       ci_ks_bounds_right: 0.074 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.14 

Current progress: 50 percent done.
VPS41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.056948e-02	ci left: 1.836317e-01	ci right 1.991485e-01	k: 1913	n:10000
Cons ci ratio: 7.116072e-02	ci left: 2.244469e-01	ci right 2.411090e-01	k: 2327	n:10000
KS ci ratio: 9.825754e-02	ci left: 1.305129e-01	ci right 1.440991e-01	k: 1372	n:10000
VPS41   10000 perm   2 sec   (5098 perm/sec)   p_kst 1.372000e-01   p_cons 2.327000e-01   p_joint 1.913000e-01

Outputting figure to mutsig2_images.part000000000189/VPS41.4_2681_10000_0.1372_0.2327_0.1913.png
                gene_name: VPS41
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 52 percent done.
VRK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.017470e-02	ci left: 7.824912e-01	ci right 7.985392e-01	k: 7906	n:10000
KS ci ratio: 2.587498e-02	ci left: 6.873824e-01	ci right 7.055030e-01	k: 6965	n:10000
VRK1   10000 perm   2 sec   (5325 perm/sec)   p_kst 6.965000e-01   p_cons 7.906000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VRK1.4_1239_10000_0.6965_0.7906_1.png
                gene_name: VRK1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
VRK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.427224e-03	ci left: 9.407656e-01	ci right 9.497727e-01	k: 9454	n:10000
KS ci ratio: 2.538035e-02	ci left: 6.955495e-01	ci right 7.135312e-01	k: 7046	n:10000
VRK2   10000 perm   2 sec   (5563 perm/sec)   p_kst 7.046000e-01   p_cons 9.454000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VRK2.4_1588_10000_0.7046_0.9454_1.png
                gene_name: VRK2
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
VRK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.120912e-02	ci left: 6.023677e-01	ci right 6.215670e-01	k: 6120	n:10000
Cons ci ratio: 2.563048e-02	ci left: 6.914151e-01	ci right 7.094680e-01	k: 7005	n:10000
KS ci ratio: 3.590659e-02	ci left: 5.338761e-01	ci right 5.534984e-01	k: 5437	n:10000
VRK3   10000 perm   2 sec   (6591 perm/sec)   p_kst 5.437000e-01   p_cons 7.005000e-01   p_joint 6.120000e-01

Outputting figure to mutsig2_images.part000000000189/VRK3.4_1473_10000_0.5437_0.7005_0.612.png
                gene_name: VRK3
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 57 percent done.
VIM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.916278e-02	ci left: 4.905513e-01	ci right 5.102485e-01	k: 5004	n:10000
Cons ci ratio: 2.236025e-02	ci left: 7.459413e-01	ci right 7.629103e-01	k: 7545	n:10000
KS ci ratio: 6.385595e-02	ci left: 2.648793e-01	ci right 2.824527e-01	k: 2736	n:10000
VIM   10000 perm   2 sec   (6063 perm/sec)   p_kst 2.736000e-01   p_cons 7.545000e-01   p_joint 5.004000e-01

Outputting figure to mutsig2_images.part000000000189/VIM.3_1437_10000_0.2736_0.7545_0.5004.png
                gene_name: VIM
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 59 percent done.
VIPR2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.702810e-02	ci left: 5.185589e-01	ci right 5.382245e-01	k: 5284	n:10000
Cons ci ratio: 1.847911e-02	ci left: 8.104985e-01	ci right 8.257157e-01	k: 8182	n:10000
KS ci ratio: 5.297765e-02	ci left: 3.443228e-01	ci right 3.631625e-01	k: 3537	n:10000
VIPR2   10000 perm   2 sec   (6254 perm/sec)   p_kst 3.537000e-01   p_cons 8.182000e-01   p_joint 5.284000e-01

Outputting figure to mutsig2_images.part000000000189/VIPR2.3_1369_10000_0.3537_0.8182_0.5284.png
                gene_name: VIPR2
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 61 percent done.
VMO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.989034e-02	ci left: 6.227620e-01	ci right 6.417609e-01	k: 6323	n:10000
Cons ci ratio: 4.811095e-02	ci left: 3.892832e-01	ci right 4.085757e-01	k: 3989	n:10000
KS ci ratio: 2.890802e-02	ci left: 6.382456e-01	ci right 6.570684e-01	k: 6477	n:10000
VMO1   10000 perm   2 sec   (5629 perm/sec)   p_kst 6.477000e-01   p_cons 3.989000e-01   p_joint 6.323000e-01

Outputting figure to mutsig2_images.part000000000189/VMO1.3_655_10000_0.6477_0.3989_0.6323.png
                gene_name: VMO1
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 62 percent done.
VPS26B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.744616e-02	ci left: 5.129549e-01	ci right 5.326318e-01	k: 5228	n:10000
Cons ci ratio: 1.332907e-01	ci left: 7.427098e-02	ci right 8.497542e-02	k: 795	n:10000
KS ci ratio: 3.799000e-02	ci left: 5.057516e-01	ci right 5.254393e-01	k: 5156	n:10000
VPS26B   10000 perm   2 sec   (6218 perm/sec)   p_kst 5.156000e-01   p_cons 7.950000e-02   p_joint 5.228000e-01

Joint ci ratio: 6.449679e-02	ci left: 1.508484e-01	ci right 1.609518e-01	k: 3117	n:20000
Cons ci ratio: 9.460828e-02	ci left: 7.529807e-02	ci right 8.282484e-02	k: 1580	n:20000
KS ci ratio: 2.678168e-02	ci left: 5.101975e-01	ci right 5.240975e-01	k: 10343	n:20000
VPS26B   20000 perm   4 sec   (5495 perm/sec)   p_kst 5.171500e-01   p_cons 7.900000e-02   p_joint 1.558500e-01

Outputting figure to mutsig2_images.part000000000189/VPS26B.3_1035_20000_0.51715_0.079_0.15585.png
                gene_name: VPS26B
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 64 percent done.
VPS33A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.784267e-02	ci left: 8.208650e-01	ci right 8.357433e-01	k: 8284	n:10000
Cons ci ratio: 6.239472e-02	ci left: 2.740864e-01	ci right 2.918402e-01	k: 2829	n:10000
KS ci ratio: 1.607365e-02	ci left: 8.490671e-01	ci right 8.629248e-01	k: 8561	n:10000
VPS33A   10000 perm   2 sec   (5433 perm/sec)   p_kst 8.561000e-01   p_cons 2.829000e-01   p_joint 8.284000e-01

Outputting figure to mutsig2_images.part000000000189/VPS33A.3_1843_10000_0.8561_0.2829_0.8284.png
                gene_name: VPS33A
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 66 percent done.
VPS35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.461527e-02	ci left: 8.714250e-01	ci right 8.843539e-01	k: 8780	n:10000
KS ci ratio: 4.088419e-02	ci left: 4.690663e-01	ci right 4.887460e-01	k: 4789	n:10000
VPS35   10000 perm   2 sec   (5632 perm/sec)   p_kst 4.789000e-01   p_cons 8.780000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VPS35.3_2459_10000_0.4789_0.878_1.png
                gene_name: VPS35
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
VPS37C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.195586e-02	ci left: 4.561840e-01	ci right 4.758358e-01	k: 4660	n:10000
KS ci ratio: 1.183680e-02	ci left: 9.109059e-01	ci right 9.218501e-01	k: 9165	n:10000
VPS37C   10000 perm   2 sec   (6352 perm/sec)   p_kst 9.165000e-01   p_cons 4.660000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VPS37C.3_1084_10000_0.9165_0.466_1.png
                gene_name: VPS37C
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
VPS53
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.318138e-02	ci left: 4.419113e-01	ci right 4.615169e-01	k: 4517	n:10000
Cons ci ratio: 7.712279e-02	ci left: 1.973215e-01	ci right 2.132506e-01	k: 2052	n:10000
KS ci ratio: 4.312913e-02	ci left: 4.425100e-01	ci right 4.621178e-01	k: 4523	n:10000
VPS53   10000 perm   2 sec   (5596 perm/sec)   p_kst 4.523000e-01   p_cons 2.052000e-01   p_joint 4.517000e-01

Outputting figure to mutsig2_images.part000000000189/VPS53.3_2602_10000_0.4523_0.2052_0.4517.png
                gene_name: VPS53
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 71 percent done.
VSIG8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.064893e-02	ci left: 7.745865e-01	ci right 7.908485e-01	k: 7828	n:10000
Cons ci ratio: 3.903769e-02	ci left: 4.921509e-01	ci right 5.118480e-01	k: 5020	n:10000
KS ci ratio: 3.728142e-02	ci left: 5.151564e-01	ci right 5.348291e-01	k: 5250	n:10000
VSIG8   10000 perm   2 sec   (6279 perm/sec)   p_kst 5.250000e-01   p_cons 5.020000e-01   p_joint 7.828000e-01

Outputting figure to mutsig2_images.part000000000189/VSIG8.3_1273_10000_0.525_0.502_0.7828.png
                gene_name: VSIG8
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 73 percent done.
VGLL4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.886136e-02	ci left: 3.819165e-01	ci right 4.011468e-01	k: 3915	n:10000
Cons ci ratio: 5.039228e-02	ci left: 3.673888e-01	ci right 3.864829e-01	k: 3769	n:10000
KS ci ratio: 1.161806e-01	ci left: 9.623212e-02	ci right 1.082007e-01	k: 1021	n:10000
VGLL4   10000 perm   2 sec   (6389 perm/sec)   p_kst 1.021000e-01   p_cons 3.769000e-01   p_joint 3.915000e-01

Joint ci ratio: 5.709189e-02	ci left: 1.852757e-01	ci right 1.962144e-01	k: 3814	n:20000
Cons ci ratio: 3.678244e-02	ci left: 3.554845e-01	ci right 3.688556e-01	k: 7243	n:20000
KS ci ratio: 8.201966e-02	ci left: 9.828040e-02	ci right 1.067356e-01	k: 2049	n:20000
VGLL4   20000 perm   4 sec   (5328 perm/sec)   p_kst 1.024500e-01   p_cons 3.621500e-01   p_joint 1.907000e-01

Outputting figure to mutsig2_images.part000000000189/VGLL4.2_1003_20000_0.10245_0.36215_0.1907.png
                gene_name: VGLL4
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.098 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 75 percent done.
VMA21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.083417e-02	ci left: 9.238935e-01	ci right 9.340549e-01	k: 9291	n:10000
Cons ci ratio: 2.002843e-02	ci left: 7.849243e-01	ci right 8.009047e-01	k: 7930	n:10000
KS ci ratio: 7.924085e-02	ci left: 1.887513e-01	ci right 2.044258e-01	k: 1965	n:10000
VMA21   10000 perm   1 sec   (6864 perm/sec)   p_kst 1.965000e-01   p_cons 7.930000e-01   p_joint 9.291000e-01

Outputting figure to mutsig2_images.part000000000189/VMA21.2_318_10000_0.1965_0.793_0.9291.png
                gene_name: VMA21
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 77 percent done.
VNN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.840208e-03	ci left: 9.967917e-01	ci right 9.986996e-01	k: 9979	n:10000
KS ci ratio: 4.407262e-02	ci left: 4.318355e-01	ci right 4.513986e-01	k: 4416	n:10000
VNN2   10000 perm   2 sec   (6262 perm/sec)   p_kst 4.416000e-01   p_cons 9.979000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VNN2.2_1591_10000_0.4416_0.9979_1.png
                gene_name: VNN2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
VOPP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.595156e-03	ci left: 9.600562e-01	ci right 9.674704e-01	k: 9639	n:10000
Cons ci ratio: 1.722442e-02	ci left: 8.308338e-01	ci right 8.453686e-01	k: 8382	n:10000
KS ci ratio: 3.987402e-02	ci left: 4.815553e-01	ci right 5.012497e-01	k: 4914	n:10000
VOPP1   10000 perm   1 sec   (7040 perm/sec)   p_kst 4.914000e-01   p_cons 8.382000e-01   p_joint 9.639000e-01

Outputting figure to mutsig2_images.part000000000189/VOPP1.2_539_10000_0.4914_0.8382_0.9639.png
                gene_name: VOPP1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 80 percent done.
VPS18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.654387e-02	ci left: 6.763973e-01	ci right 6.946945e-01	k: 6856	n:10000
Cons ci ratio: 5.726153e-02	ci left: 3.098686e-01	ci right 3.282369e-01	k: 3190	n:10000
KS ci ratio: 3.040012e-02	ci left: 6.148232e-01	ci right 6.339043e-01	k: 6244	n:10000
VPS18   10000 perm   2 sec   (5674 perm/sec)   p_kst 6.244000e-01   p_cons 3.190000e-01   p_joint 6.856000e-01

Outputting figure to mutsig2_images.part000000000189/VPS18.2_2942_10000_0.6244_0.319_0.6856.png
                gene_name: VPS18
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 82 percent done.
VPS24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.109773e-02	ci left: 4.664693e-01	ci right 4.861445e-01	k: 4763	n:10000
Cons ci ratio: 3.629176e-02	ci left: 5.285691e-01	ci right 5.482085e-01	k: 5384	n:10000
KS ci ratio: 6.264161e-02	ci left: 2.725021e-01	ci right 2.902255e-01	k: 2813	n:10000
VPS24   10000 perm   1 sec   (6757 perm/sec)   p_kst 2.813000e-01   p_cons 5.384000e-01   p_joint 4.763000e-01

Outputting figure to mutsig2_images.part000000000189/VPS24.2_693_10000_0.2813_0.5384_0.4763.png
                gene_name: VPS24
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 84 percent done.
VPS33B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.007054e-02	ci left: 6.199480e-01	ci right 6.389766e-01	k: 6295	n:10000
KS ci ratio: 9.751082e-03	ci left: 9.370311e-01	ci right 9.463095e-01	k: 9418	n:10000
VPS33B   10000 perm   2 sec   (6303 perm/sec)   p_kst 9.418000e-01   p_cons 6.295000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VPS33B.2_1946_10000_0.9418_0.6295_1.png
                gene_name: VPS33B
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
VPS39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.558164e-02	ci left: 6.922218e-01	ci right 7.102608e-01	k: 7013	n:10000
KS ci ratio: 1.107859e-02	ci left: 9.207974e-01	ci right 9.311528e-01	k: 9261	n:10000
VPS39   10000 perm   2 sec   (5984 perm/sec)   p_kst 9.261000e-01   p_cons 7.013000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VPS39.2_2728_10000_0.9261_0.7013_1.png
                gene_name: VPS39
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 88 percent done.
VPS45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.913424e-02	ci left: 7.997350e-01	ci right 8.152855e-01	k: 8076	n:10000
KS ci ratio: 1.769192e-02	ci left: 8.233055e-01	ci right 8.381013e-01	k: 8308	n:10000
VPS45   10000 perm   2 sec   (5614 perm/sec)   p_kst 8.308000e-01   p_cons 8.076000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VPS45.2_1773_10000_0.8308_0.8076_1.png
                gene_name: VPS45
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
VPS4A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.109811e-02	ci left: 2.826046e-01	ci right 3.005169e-01	k: 2915	n:10000
Cons ci ratio: 3.740866e-02	ci left: 5.134552e-01	ci right 5.331312e-01	k: 5233	n:10000
KS ci ratio: 1.181872e-01	ci left: 9.321372e-02	ci right 1.050210e-01	k: 990	n:10000
VPS4A   10000 perm   2 sec   (6394 perm/sec)   p_kst 9.900000e-02   p_cons 5.233000e-01   p_joint 2.915000e-01

Joint ci ratio: 8.366637e-02	ci left: 9.474715e-02	ci right 1.030699e-01	k: 1977	n:20000
Cons ci ratio: 2.642993e-02	ci left: 5.168003e-01	ci right 5.306928e-01	k: 10475	n:20000
KS ci ratio: 8.366637e-02	ci left: 9.474715e-02	ci right 1.030699e-01	k: 1977	n:20000
VPS4A   20000 perm   4 sec   (5513 perm/sec)   p_kst 9.885000e-02   p_cons 5.237500e-01   p_joint 9.885000e-02

Outputting figure to mutsig2_images.part000000000189/VPS4A.2_1358_20000_0.09885_0.52375_0.09885.png
                gene_name: VPS4A
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.099 
     ci_joint_bounds_left: 0.095 
    ci_joint_bounds_right: 0.10 

Current progress: 91 percent done.
VPS4B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.247189e-02	ci left: 5.832952e-01	ci right 6.026506e-01	k: 5930	n:10000
KS ci ratio: 1.011016e-02	ci left: 9.327839e-01	ci right 9.423592e-01	k: 9377	n:10000
VPS4B   10000 perm   2 sec   (6423 perm/sec)   p_kst 9.377000e-01   p_cons 5.930000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VPS4B.2_1379_10000_0.9377_0.593_1.png
                gene_name: VPS4B
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
VSIG1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.190759e-02	ci left: 7.535277e-01	ci right 7.703194e-01	k: 7620	n:10000
KS ci ratio: 2.395411e-02	ci left: 7.192638e-01	ci right 7.368032e-01	k: 7281	n:10000
VSIG1   10000 perm   2 sec   (6496 perm/sec)   p_kst 7.281000e-01   p_cons 7.620000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VSIG1.2_1304_10000_0.7281_0.762_1.png
                gene_name: VSIG1
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 95 percent done.
VSIG2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.437554e-03	ci left: 9.515867e-01	ci right 9.597452e-01	k: 9558	n:10000
KS ci ratio: 2.189552e-02	ci left: 7.537301e-01	ci right 7.705170e-01	k: 7622	n:10000
VSIG2   10000 perm   2 sec   (6660 perm/sec)   p_kst 7.622000e-01   p_cons 9.558000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VSIG2.2_1012_10000_0.7622_0.9558_1.png
                gene_name: VSIG2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
VSIG4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.060744e-02	ci left: 2.272116e-01	ci right 2.439427e-01	k: 2355	n:10000
Cons ci ratio: 1.253329e-01	ci left: 8.348941e-02	ci right 9.475129e-02	k: 890	n:10000
KS ci ratio: 1.286912e-01	ci left: 7.941135e-02	ci right 9.043186e-02	k: 848	n:10000
VSIG4   10000 perm   1 sec   (6831 perm/sec)   p_kst 8.480000e-02   p_cons 8.900000e-02   p_joint 2.355000e-01

Joint ci ratio: 5.823585e-02	ci left: 1.792936e-01	ci right 1.900982e-01	k: 3693	n:20000
Cons ci ratio: 9.001893e-02	ci left: 8.268849e-02	ci right 9.053218e-02	k: 1731	n:20000
KS ci ratio: 9.097100e-02	ci left: 8.107257e-02	ci right 8.884859e-02	k: 1698	n:20000
VSIG4   20000 perm   3 sec   (5837 perm/sec)   p_kst 8.490000e-02   p_cons 8.655000e-02   p_joint 1.846500e-01

Outputting figure to mutsig2_images.part000000000189/VSIG4.2_1236_20000_0.0849_0.08655_0.18465.png
                gene_name: VSIG4
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.085 
        ci_ks_bounds_left: 0.081 
       ci_ks_bounds_right: 0.089 
                   p_cons: 0.087 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.091 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 98 percent done.
VSX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.318688e-02	ci left: 7.320922e-01	ci right 7.493674e-01	k: 7408	n:10000
KS ci ratio: 1.477842e-02	ci left: 8.689718e-01	ci right 8.820086e-01	k: 8756	n:10000
VSX1   10000 perm   2 sec   (6234 perm/sec)   p_kst 8.756000e-01   p_cons 7.408000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000189/VSX1.2_1211_10000_0.8756_0.7408_1.png
                gene_name: VSX1
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000189
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 189 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1532>
Subject: Job 9894204: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1532>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000190> was used as the working directory.
Started at Sat Oct  6 00:35:30 2012
Results reported at Sat Oct  6 00:46:19 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000190.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000190.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 190  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000190.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    734.18 sec.
    Max Memory :      3659 MB
    Max Swap   :      5944 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
190
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 190
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 190: processing genes 17039 - 17129
Calculating significance of each gene.
Using projection method.
17039	VWC2L	2.448384e-01
17040	VWCE	8.009303e-01
17041	VWF	6.676886e-01
17042	WAC	2.221611e-01
17043	WAPAL	5.948136e-01
17044	WARS	6.082037e-01
17045	WARS2	2.832920e-01
17046	WAS	8.325250e-01
17047	WASF1	3.809405e-01
17048	WASF2	4.472530e-01
17049	WASF3	4.382327e-01
17050	WASL	2.176557e-01
17051	WBP1	6.321808e-01
17052	WBP11	7.550473e-01
17053	WBP2	1
17054	WBP2NL	2.279527e-01
17055	WBP4	4.317399e-01
17056	WBP5	5.821714e-02
17057	WBSCR16	1
In gene WBSCR17 the following bins exceed PROBCAP:
    COAD-AA-3562	categ 6	N = 1733    n = 1	mu =   1.38e-07
17058	WBSCR17	3.800529e-09
17059	WBSCR22	6.637594e-01
17060	WBSCR27	1
17061	WBSCR28	1
17062	WDFY1	6.366317e-01
17063	WDFY2	5.491311e-01
17064	WDFY3	5.579038e-02
17065	WDHD1	6.182639e-01
17066	WDR1	6.951131e-01
17067	WDR11	8.277413e-01
17068	WDR12	7.443092e-01
17069	WDR13	5.743604e-01
17070	WDR16	1.766428e-01
17071	WDR17	2.273240e-02
17072	WDR18	1
17073	WDR19	8.565331e-01
17074	WDR20	9.272716e-01
17075	WDR24	1
17076	WDR25	6.050394e-01
17077	WDR26	8.168973e-02
17078	WDR27	9.555329e-01
17079	WDR3	6.460202e-02
17080	WDR31	5.261846e-01
In gene WDR33 the following bins exceed PROBCAP:
    COAD-AA-3851	categ 6	N = 4159    n = 1	mu =   3.95e-07
17081	WDR33	4.749816e-01
17082	WDR34	1
17083	WDR35	2.471164e-01
17084	WDR36	1.311190e-01
17085	WDR37	1
17086	WDR38	7.721672e-01
17087	WDR4	6.181965e-01
17088	WDR41	3.983219e-01
17089	WDR43	7.840436e-01
17090	WDR44	7.993031e-01
17091	WDR45	3.668285e-01
17092	WDR45L	5.694438e-01
17093	WDR46	6.781232e-01
In gene WDR47 the following bins exceed PROBCAP:
    COAD-AA-3554	categ 6	N = 2829    n = 1	mu =   7.59e-07
17094	WDR47	9.555395e-02
17095	WDR48	5.795283e-01
17096	WDR49	1.132596e-01
17097	WDR5	7.768505e-01
17098	WDR52	7.086611e-02
17099	WDR53	7.655767e-01
17100	WDR54	6.992316e-01
17101	WDR55	5.374277e-01
17102	WDR59	9.933194e-01
17103	WDR5B	7.963872e-02
17104	WDR6	9.856181e-01
17105	WDR60	9.884426e-01
17106	WDR61	6.663791e-01
17107	WDR62	8.308623e-01
17108	WDR63	6.876357e-01
17109	WDR64	2.509378e-02
17110	WDR65	7.370871e-01
17111	WDR66	3.800211e-01
17112	WDR67	9.713945e-01
17113	WDR69	5.151439e-02
17114	WDR7	6.798540e-01
17115	WDR70	5.148671e-01
17116	WDR72	7.447310e-02
17117	WDR73	8.346892e-01
17118	WDR74	8.637173e-01
17119	WDR75	2.627040e-01
17120	WDR76	7.789371e-01
17121	WDR77	5.332554e-01
17122	WDR78	2.183219e-01
17123	WDR8	2.196443e-01
17124	WDR81	1
17125	WDR82	1
17126	WDR83	1
17127	WDR85	1
17128	WDR86	3.095241e-01
17129	WDR88	5.775212e-01
Done

Running MutSig 2:
Scatter job 190: processing genes 17039 - 17129
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
WDFY3
Processing conservation and coverage...
91% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.055801e-02	ci left: 4.730621e-01	ci right 4.927479e-01	k: 4829	n:10000
Cons ci ratio: 4.850438e-02	ci left: 3.854004e-01	ci right 4.046607e-01	k: 3950	n:10000
KS ci ratio: 4.607595e-02	ci left: 4.101016e-01	ci right 4.295451e-01	k: 4198	n:10000
WDFY3   10000 perm   5 sec   (2209 perm/sec)   p_kst 4.198000e-01   p_cons 3.950000e-01   p_joint 4.829000e-01

Outputting figure to mutsig2_images.part000000000190/WDFY3.30_10884_10000_0.4198_0.395_0.4829.png
                gene_name: WDFY3
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 2 percent done.
WBSCR17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.906570e-02	ci left: 1.894406e-01	ci right 2.051361e-01	k: 1972	n:10000
Cons ci ratio: 3.054934e-02	ci left: 6.125124e-01	ci right 6.316164e-01	k: 6221	n:10000
KS ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
WBSCR17   10000 perm   2 sec   (4167 perm/sec)   p_kst 7.860000e-02   p_cons 6.221000e-01   p_joint 1.972000e-01

Joint ci ratio: 6.897111e-02	ci left: 1.342332e-01	ci right 1.438720e-01	k: 2780	n:20000
Cons ci ratio: 2.148572e-02	ci left: 6.178965e-01	ci right 6.313672e-01	k: 12493	n:20000
KS ci ratio: 9.503318e-02	ci left: 7.466227e-02	ci right 8.216085e-02	k: 1567	n:20000
WBSCR17   20000 perm   5 sec   (3849 perm/sec)   p_kst 7.835000e-02   p_cons 6.246500e-01   p_joint 1.390000e-01

Outputting figure to mutsig2_images.part000000000190/WBSCR17.19_1841_20000_0.07835_0.62465_0.139.png
                gene_name: WBSCR17
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.075 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 3 percent done.
VWF
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.924448e-02	ci left: 6.329156e-01	ci right 6.518014e-01	k: 6424	n:10000
Cons ci ratio: 1.624928e-02	ci left: 8.463146e-01	ci right 8.602789e-01	k: 8534	n:10000
KS ci ratio: 4.148685e-02	ci left: 4.617755e-01	ci right 4.814411e-01	k: 4716	n:10000
VWF   10000 perm   3 sec   (2989 perm/sec)   p_kst 4.716000e-01   p_cons 8.534000e-01   p_joint 6.424000e-01

Outputting figure to mutsig2_images.part000000000190/VWF.15_8646_10000_0.4716_0.8534_0.6424.png
                gene_name: VWF
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 5 percent done.
WDR17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.909943e-03	ci left: 9.351657e-01	ci right 9.445760e-01	k: 9400	n:10000
Cons ci ratio: 2.071569e-02	ci left: 7.734721e-01	ci right 7.897635e-01	k: 7817	n:10000
KS ci ratio: 4.674428e-02	ci left: 4.031269e-01	ci right 4.225239e-01	k: 4128	n:10000
WDR17   10000 perm   3 sec   (3744 perm/sec)   p_kst 4.128000e-01   p_cons 7.817000e-01   p_joint 9.400000e-01

Outputting figure to mutsig2_images.part000000000190/WDR17.14_4089_10000_0.4128_0.7817_0.94.png
                gene_name: WDR17
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.94 

Current progress: 7 percent done.
WDR72
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.566102e-02	ci left: 6.909110e-01	ci right 7.089724e-01	k: 7000	n:10000
KS ci ratio: 6.915738e-03	ci left: 9.663613e-01	ci right 9.731614e-01	k: 9699	n:10000
WDR72   10000 perm   2 sec   (4200 perm/sec)   p_kst 9.699000e-01   p_cons 7.000000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR72.13_3385_10000_0.9699_0.7_1.png
                gene_name: WDR72
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
WDR66
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.561827e-02	ci left: 6.916168e-01	ci right 7.096662e-01	k: 7007	n:10000
Cons ci ratio: 3.573329e-02	ci left: 5.362797e-01	ci right 5.558935e-01	k: 5461	n:10000
KS ci ratio: 3.136044e-02	ci left: 6.000581e-01	ci right 6.192779e-01	k: 6097	n:10000
WDR66   10000 perm   3 sec   (3890 perm/sec)   p_kst 6.097000e-01   p_cons 5.461000e-01   p_joint 7.007000e-01

Outputting figure to mutsig2_images.part000000000190/WDR66.10_3593_10000_0.6097_0.5461_0.7007.png
                gene_name: WDR66
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 10 percent done.
WDR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.721333e-01	ci left: 4.504270e-02	ci right 5.362227e-02	k: 492	n:10000
Cons ci ratio: 2.076755e-01	ci left: 3.081908e-02	ci right 3.805543e-02	k: 343	n:10000
KS ci ratio: 8.409273e-02	ci left: 1.709408e-01	ci right 1.860470e-01	k: 1784	n:10000
WDR7   10000 perm   2 sec   (4065 perm/sec)   p_kst 1.784000e-01   p_cons 3.430000e-02   p_joint 4.920000e-02

Joint ci ratio: 1.738128e-01	ci left: 2.264113e-02	ci right 2.699852e-02	k: 495	n:20000
Cons ci ratio: 1.467418e-01	ci left: 3.191701e-02	ci right 3.701950e-02	k: 688	n:20000
KS ci ratio: 5.844943e-02	ci left: 1.782062e-01	ci right 1.889859e-01	k: 3671	n:20000
WDR7   20000 perm   6 sec   (3553 perm/sec)   p_kst 1.835500e-01   p_cons 3.440000e-02   p_joint 2.475000e-02

Joint ci ratio: 9.885800e-02	ci left: 4.733292e-02	ci right 5.228806e-02	k: 1493	n:30000
Cons ci ratio: 1.202678e-01	ci left: 3.213961e-02	ci right 3.628457e-02	k: 1025	n:30000
KS ci ratio: 4.791588e-02	ci left: 1.780113e-01	ci right 1.867836e-01	k: 5471	n:30000
WDR7   30000 perm   9 sec   (3451 perm/sec)   p_kst 1.823667e-01   p_cons 3.416667e-02   p_joint 4.976667e-02

Joint ci ratio: 8.364377e-02	ci left: 4.986876e-02	ci right 5.424656e-02	k: 2081	n:40000
Cons ci ratio: 1.086345e-01	ci left: 2.980990e-02	ci right 3.325856e-02	k: 1260	n:40000
KS ci ratio: 4.245313e-02	ci left: 1.719569e-01	ci right 1.794403e-01	k: 7027	n:40000
WDR7   40000 perm   12 sec   (3385 perm/sec)   p_kst 1.756750e-01   p_cons 3.150000e-02   p_joint 5.202500e-02

Joint ci ratio: 7.790162e-02	ci left: 4.631923e-02	ci right 5.009344e-02	k: 2409	n:50000
Cons ci ratio: 9.629407e-02	ci left: 3.053314e-02	ci right 3.364150e-02	k: 1603	n:50000
KS ci ratio: 3.783032e-02	ci left: 1.734252e-01	ci right 1.801324e-01	k: 8838	n:50000
WDR7   50000 perm   15 sec   (3353 perm/sec)   p_kst 1.767600e-01   p_cons 3.206000e-02   p_joint 4.818000e-02

Outputting figure to mutsig2_images.part000000000190/WDR7.10_4581_50000_0.17676_0.03206_0.04818.png
                gene_name: WDR7
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.048 
     ci_joint_bounds_left: 0.046 
    ci_joint_bounds_right: 0.050 

Current progress: 12 percent done.
WDR33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.241845e-02	ci left: 2.183268e-01	ci right 2.348328e-01	k: 2265	n:10000
Cons ci ratio: 1.437615e-01	ci left: 6.420510e-02	ci right 7.424761e-02	k: 691	n:10000
KS ci ratio: 8.327350e-03	ci left: 9.527344e-01	ci right 9.607967e-01	k: 9569	n:10000
WDR33   10000 perm   3 sec   (3864 perm/sec)   p_kst 9.569000e-01   p_cons 6.910000e-02   p_joint 2.265000e-01

Joint ci ratio: 4.097489e-02	ci left: 3.074708e-01	ci right 3.203834e-01	k: 6278	n:20000
Cons ci ratio: 1.004535e-01	ci left: 6.718520e-02	ci right 7.434020e-02	k: 1414	n:20000
KS ci ratio: 5.885512e-03	ci left: 9.539933e-01	ci right 9.596729e-01	k: 19138	n:20000
WDR33   20000 perm   6 sec   (3517 perm/sec)   p_kst 9.569000e-01   p_cons 7.070000e-02   p_joint 3.139000e-01

Joint ci ratio: 3.100353e-02	ci left: 3.422096e-01	ci right 3.530199e-01	k: 10428	n:30000
Cons ci ratio: 8.188564e-02	ci left: 6.805338e-02	ci right 7.389670e-02	k: 2128	n:30000
KS ci ratio: 4.833765e-03	ci left: 9.540280e-01	ci right 9.586831e-01	k: 28692	n:30000
WDR33   30000 perm   9 sec   (3388 perm/sec)   p_kst 9.564000e-01   p_cons 7.093333e-02   p_joint 3.476000e-01

Outputting figure to mutsig2_images.part000000000190/WDR33.9_4504_30000_0.9564_0.070933_0.3476.png
                gene_name: WDR33
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.071 
      ci_cons_bounds_left: 0.068 
     ci_cons_bounds_right: 0.074 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 13 percent done.
WDR64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.305483e-01	ci left: 7.727681e-02	ci right 8.816773e-02	k: 826	n:10000
Cons ci ratio: 1.898176e-01	ci left: 3.700694e-02	ci right 4.486335e-02	k: 408	n:10000
KS ci ratio: 5.262044e-02	ci left: 3.474035e-01	ci right 3.662799e-01	k: 3568	n:10000
WDR64   10000 perm   2 sec   (4653 perm/sec)   p_kst 3.568000e-01   p_cons 4.080000e-02   p_joint 8.260000e-02

Joint ci ratio: 1.051694e-01	ci left: 6.152427e-02	ci right 6.840287e-02	k: 1298	n:20000
Cons ci ratio: 1.338834e-01	ci left: 3.834219e-02	ci right 4.389223e-02	k: 821	n:20000
KS ci ratio: 3.755516e-02	ci left: 3.459753e-01	ci right 3.592676e-01	k: 7052	n:20000
WDR64   20000 perm   5 sec   (4164 perm/sec)   p_kst 3.526000e-01   p_cons 4.105000e-02   p_joint 6.490000e-02

Joint ci ratio: 8.052984e-02	ci left: 7.024467e-02	ci right 7.617163e-02	k: 2195	n:30000
Cons ci ratio: 1.121940e-01	ci left: 3.690225e-02	ci right 4.132091e-02	k: 1172	n:30000
KS ci ratio: 3.078828e-02	ci left: 3.453646e-01	ci right 3.561976e-01	k: 10523	n:30000
WDR64   30000 perm   8 sec   (3963 perm/sec)   p_kst 3.507667e-01   p_cons 3.906667e-02   p_joint 7.316667e-02

Joint ci ratio: 7.353780e-02	ci left: 6.388080e-02	ci right 6.878239e-02	k: 2652	n:40000
Cons ci ratio: 1.004150e-01	ci left: 3.485420e-02	ci right 3.856345e-02	k: 1467	n:40000
KS ci ratio: 2.670299e-02	ci left: 3.454240e-01	ci right 3.547978e-01	k: 14004	n:40000
WDR64   40000 perm   10 sec   (3814 perm/sec)   p_kst 3.501000e-01   p_cons 3.667500e-02   p_joint 6.630000e-02

Joint ci ratio: 6.173477e-02	ci left: 7.231173e-02	ci right 7.693781e-02	k: 3730	n:50000
Cons ci ratio: 8.943538e-02	ci left: 3.534282e-02	ci right 3.867121e-02	k: 1849	n:50000
KS ci ratio: 2.387574e-02	ci left: 3.460773e-01	ci right 3.544601e-01	k: 17513	n:50000
WDR64   50000 perm   13 sec   (3723 perm/sec)   p_kst 3.502600e-01   p_cons 3.698000e-02   p_joint 7.460000e-02

Outputting figure to mutsig2_images.part000000000190/WDR64.9_3354_50000_0.35026_0.03698_0.0746.png
                gene_name: WDR64
               theta_stop: 0.089 
                    nperm: 50000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.037 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.039 
                  p_joint: 0.075 
     ci_joint_bounds_left: 0.072 
    ci_joint_bounds_right: 0.077 

Current progress: 15 percent done.
WDHD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.849757e-02	ci left: 6.447840e-01	ci right 6.635261e-01	k: 6542	n:10000
Cons ci ratio: 4.148685e-02	ci left: 4.617755e-01	ci right 4.814411e-01	k: 4716	n:10000
KS ci ratio: 2.484493e-02	ci left: 7.044263e-01	ci right 7.222493e-01	k: 7134	n:10000
WDHD1   10000 perm   2 sec   (4285 perm/sec)   p_kst 7.134000e-01   p_cons 4.716000e-01   p_joint 6.542000e-01

Outputting figure to mutsig2_images.part000000000190/WDHD1.8_3490_10000_0.7134_0.4716_0.6542.png
                gene_name: WDHD1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 17 percent done.
WDR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.684207e-02	ci left: 8.369418e-01	ci right 8.512571e-01	k: 8442	n:10000
Cons ci ratio: 1.066070e-02	ci left: 9.260623e-01	ci right 9.360848e-01	k: 9312	n:10000
KS ci ratio: 3.755134e-02	ci left: 5.115541e-01	ci right 5.312334e-01	k: 5214	n:10000
WDR3   10000 perm   2 sec   (5058 perm/sec)   p_kst 5.214000e-01   p_cons 9.312000e-01   p_joint 8.442000e-01

Outputting figure to mutsig2_images.part000000000190/WDR3.8_2936_10000_0.5214_0.9312_0.8442.png
                gene_name: WDR3
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 18 percent done.
WDR36
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.185996e-02	ci left: 9.105972e-01	ci right 9.215590e-01	k: 9162	n:10000
Cons ci ratio: 1.319350e-02	ci left: 8.922095e-01	ci right 9.041574e-01	k: 8983	n:10000
KS ci ratio: 3.398073e-02	ci left: 5.611297e-01	ci right 5.806290e-01	k: 5709	n:10000
WDR36   10000 perm   2 sec   (4919 perm/sec)   p_kst 5.709000e-01   p_cons 8.983000e-01   p_joint 9.162000e-01

Outputting figure to mutsig2_images.part000000000190/WDR36.8_2948_10000_0.5709_0.8983_0.9162.png
                gene_name: WDR36
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 20 percent done.
WASL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.320333e-01	ci left: 7.562816e-02	ci right 8.641740e-02	k: 809	n:10000
Cons ci ratio: 4.987073e-02	ci left: 3.722635e-01	ci right 3.914054e-01	k: 3818	n:10000
KS ci ratio: 1.564030e-01	ci left: 5.446081e-02	ci right 6.379808e-02	k: 590	n:10000
WASL   10000 perm   2 sec   (4964 perm/sec)   p_kst 5.900000e-02   p_cons 3.818000e-01   p_joint 8.090000e-02

Joint ci ratio: 9.371018e-02	ci left: 7.666776e-02	ci right 8.425474e-02	k: 1608	n:20000
Cons ci ratio: 3.453908e-02	ci left: 3.849261e-01	ci right 3.985054e-01	k: 7834	n:20000
KS ci ratio: 1.137492e-01	ci left: 5.285323e-02	ci right 5.927660e-02	k: 1120	n:20000
WASL   20000 perm   4 sec   (4490 perm/sec)   p_kst 5.600000e-02   p_cons 3.917000e-01   p_joint 8.040000e-02

Joint ci ratio: 6.915756e-02	ci left: 9.337811e-02	ci right 1.001002e-01	k: 2901	n:30000
Cons ci ratio: 2.815074e-02	ci left: 3.870348e-01	ci right 3.981193e-01	k: 11777	n:30000
KS ci ratio: 9.351148e-02	ci left: 5.274009e-02	ci right 5.794645e-02	k: 1659	n:30000
WASL   30000 perm   7 sec   (4281 perm/sec)   p_kst 5.530000e-02   p_cons 3.925667e-01   p_joint 9.670000e-02

Outputting figure to mutsig2_images.part000000000190/WASL.7_1562_30000_0.0553_0.39257_0.0967.png
                gene_name: WASL
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.055 
        ci_ks_bounds_left: 0.053 
       ci_ks_bounds_right: 0.058 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.093 
    ci_joint_bounds_right: 0.10 

Current progress: 22 percent done.
WDR35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.776107e-02	ci left: 8.221868e-01	ci right 8.370206e-01	k: 8297	n:10000
Cons ci ratio: 3.704295e-02	ci left: 5.183588e-01	ci right 5.380248e-01	k: 5282	n:10000
KS ci ratio: 2.830261e-02	ci left: 6.479030e-01	ci right 6.666053e-01	k: 6573	n:10000
WDR35   10000 perm   2 sec   (4523 perm/sec)   p_kst 6.573000e-01   p_cons 5.282000e-01   p_joint 8.297000e-01

Outputting figure to mutsig2_images.part000000000190/WDR35.7_3658_10000_0.6573_0.5282_0.8297.png
                gene_name: WDR35
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.84 

Current progress: 23 percent done.
WDR69
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.493392e-02	ci left: 8.666216e-01	ci right 8.797602e-01	k: 8733	n:10000
Cons ci ratio: 4.195586e-02	ci left: 4.561840e-01	ci right 4.758358e-01	k: 4660	n:10000
KS ci ratio: 2.557553e-02	ci left: 6.923226e-01	ci right 7.103600e-01	k: 7014	n:10000
WDR69   10000 perm   2 sec   (5493 perm/sec)   p_kst 7.014000e-01   p_cons 4.660000e-01   p_joint 8.733000e-01

Outputting figure to mutsig2_images.part000000000190/WDR69.7_1300_10000_0.7014_0.466_0.8733.png
                gene_name: WDR69
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.87 
    ci_joint_bounds_right: 0.88 

Current progress: 25 percent done.
WDR46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.145491e-02	ci left: 2.802271e-01	ci right 2.980959e-01	k: 2891	n:10000
Cons ci ratio: 1.645643e-02	ci left: 8.430535e-01	ci right 8.571419e-01	k: 8502	n:10000
KS ci ratio: 9.201623e-02	ci left: 1.464866e-01	ci right 1.607158e-01	k: 1535	n:10000
WDR46   10000 perm   2 sec   (5259 perm/sec)   p_kst 1.535000e-01   p_cons 8.502000e-01   p_joint 2.891000e-01

Outputting figure to mutsig2_images.part000000000190/WDR46.6_1893_10000_0.1535_0.8502_0.2891.png
                gene_name: WDR46
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 27 percent done.
WDR52
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.341162e-01	ci left: 7.339876e-02	ci right 8.404819e-02	k: 786	n:10000
Cons ci ratio: 1.592340e-02	ci left: 8.514124e-01	ci right 8.651781e-01	k: 8584	n:10000
KS ci ratio: 2.276270e-01	ci left: 2.551545e-02	ci right 3.216281e-02	k: 287	n:10000
WDR52   10000 perm   3 sec   (3753 perm/sec)   p_kst 2.870000e-02   p_cons 8.584000e-01   p_joint 7.860000e-02

Joint ci ratio: 9.984730e-02	ci left: 6.796658e-02	ci right 7.515858e-02	k: 1430	n:20000
Cons ci ratio: 1.080081e-02	ci left: 8.634333e-01	ci right 8.728594e-01	k: 17364	n:20000
KS ci ratio: 1.613936e-01	ci left: 2.633371e-02	ci right 3.100466e-02	k: 572	n:20000
WDR52   20000 perm   6 sec   (3485 perm/sec)   p_kst 2.860000e-02   p_cons 8.682000e-01   p_joint 7.150000e-02

Joint ci ratio: 7.441371e-02	ci left: 8.150739e-02	ci right 8.783998e-02	k: 2539	n:30000
Cons ci ratio: 9.092697e-03	ci left: 8.570674e-01	ci right 8.649292e-01	k: 25831	n:30000
KS ci ratio: 1.325343e-01	ci left: 2.645263e-02	ci right 3.023945e-02	k: 849	n:30000
WDR52   30000 perm   9 sec   (3321 perm/sec)   p_kst 2.830000e-02   p_cons 8.610333e-01   p_joint 8.463333e-02

Joint ci ratio: 6.764502e-02	ci left: 7.482410e-02	ci right 8.008744e-02	k: 3097	n:40000
Cons ci ratio: 7.808760e-03	ci left: 8.596168e-01	ci right 8.663804e-01	k: 34521	n:40000
KS ci ratio: 1.151100e-01	ci left: 2.655092e-02	ci right 2.981806e-02	k: 1126	n:40000
WDR52   40000 perm   12 sec   (3203 perm/sec)   p_kst 2.815000e-02   p_cons 8.630250e-01   p_joint 7.742500e-02

Joint ci ratio: 6.056727e-02	ci left: 7.495396e-02	ci right 7.965525e-02	k: 3864	n:50000
Cons ci ratio: 7.111547e-03	ci left: 8.556160e-01	ci right 8.617423e-01	k: 42935	n:50000
KS ci ratio: 1.033643e-01	ci left: 2.651294e-02	ci right 2.942221e-02	k: 1397	n:50000
WDR52   50000 perm   16 sec   (3161 perm/sec)   p_kst 2.794000e-02   p_cons 8.587000e-01   p_joint 7.728000e-02

Joint ci ratio: 6.020171e-02	ci left: 6.400963e-02	ci right 6.799914e-02	k: 3959	n:60000
Cons ci ratio: 6.503034e-03	ci left: 8.554671e-01	ci right 8.610649e-01	k: 51497	n:60000
KS ci ratio: 9.495988e-02	ci left: 2.630372e-02	ci right 2.894224e-02	k: 1656	n:60000
WDR52   60000 perm   19 sec   (3117 perm/sec)   p_kst 2.760000e-02   p_cons 8.582833e-01   p_joint 6.598333e-02

Outputting figure to mutsig2_images.part000000000190/WDR52.6_5716_60000_0.0276_0.85828_0.065983.png
                gene_name: WDR52
               theta_stop: 0.095 
                    nperm: 60000 
                     p_ks: 0.028 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.029 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.068 

Current progress: 28 percent done.
WDR62
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.043641e-02	ci left: 4.745607e-01	ci right 4.942484e-01	k: 4844	n:10000
Cons ci ratio: 8.173326e-02	ci left: 1.793015e-01	ci right 1.946813e-01	k: 1869	n:10000
KS ci ratio: 4.305957e-02	ci left: 4.433082e-01	ci right 4.629191e-01	k: 4531	n:10000
WDR62   10000 perm   3 sec   (3998 perm/sec)   p_kst 4.531000e-01   p_cons 1.869000e-01   p_joint 4.844000e-01

Outputting figure to mutsig2_images.part000000000190/WDR62.6_4700_10000_0.4531_0.1869_0.4844.png
                gene_name: WDR62
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 30 percent done.
WAC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.647107e-01	ci left: 4.917009e-02	ci right 5.809220e-02	k: 535	n:10000
Cons ci ratio: 1.185861e-01	ci left: 9.262972e-02	ci right 1.044053e-01	k: 984	n:10000
KS ci ratio: 9.935064e-02	ci left: 1.279678e-01	ci right 1.414457e-01	k: 1346	n:10000
WAC   10000 perm   2 sec   (5115 perm/sec)   p_kst 1.346000e-01   p_cons 9.840000e-02   p_joint 5.350000e-02

Joint ci ratio: 8.720915e-02	ci left: 8.773481e-02	ci right 9.578433e-02	k: 1834	n:20000
Cons ci ratio: 8.317725e-02	ci left: 9.577751e-02	ci right 1.041392e-01	k: 1998	n:20000
KS ci ratio: 7.054046e-02	ci left: 1.290118e-01	ci right 1.384949e-01	k: 2674	n:20000
WAC   20000 perm   4 sec   (4632 perm/sec)   p_kst 1.337000e-01   p_cons 9.990000e-02   p_joint 9.170000e-02

Outputting figure to mutsig2_images.part000000000190/WAC.5_2000_20000_0.1337_0.0999_0.0917.png
                gene_name: WAC
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.096 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.096 

Current progress: 32 percent done.
WAPAL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.080668e-02	ci left: 7.719526e-01	ci right 7.882839e-01	k: 7802	n:10000
Cons ci ratio: 1.219629e-02	ci left: 9.060712e-01	ci right 9.172877e-01	k: 9118	n:10000
KS ci ratio: 2.390573e-02	ci left: 7.200716e-01	ci right 7.375949e-01	k: 7289	n:10000
WAPAL   10000 perm   2 sec   (4209 perm/sec)   p_kst 7.289000e-01   p_cons 9.118000e-01   p_joint 7.802000e-01

Outputting figure to mutsig2_images.part000000000190/WAPAL.5_3645_10000_0.7289_0.9118_0.7802.png
                gene_name: WAPAL
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 33 percent done.
WDR16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.301904e-02	ci left: 1.746777e-01	ci right 1.899078e-01	k: 1822	n:10000
Cons ci ratio: 1.184528e-01	ci left: 9.282438e-02	ci right 1.046106e-01	k: 986	n:10000
KS ci ratio: 3.990594e-02	ci left: 4.811556e-01	ci right 5.008497e-01	k: 4910	n:10000
WDR16   10000 perm   2 sec   (5302 perm/sec)   p_kst 4.910000e-01   p_cons 9.860000e-02   p_joint 1.822000e-01

Joint ci ratio: 3.972921e-02	ci left: 3.208472e-01	ci right 3.339030e-01	k: 6547	n:20000
Cons ci ratio: 8.397294e-02	ci left: 9.410938e-02	ci right 1.024078e-01	k: 1964	n:20000
KS ci ratio: 2.755899e-02	ci left: 4.958956e-01	ci right 5.098036e-01	k: 10057	n:20000
WDR16   20000 perm   4 sec   (4694 perm/sec)   p_kst 5.028500e-01   p_cons 9.820000e-02   p_joint 3.273500e-01

Outputting figure to mutsig2_images.part000000000190/WDR16.5_1919_20000_0.50285_0.0982_0.32735.png
                gene_name: WDR16
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 35 percent done.
WDR26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.586988e-01	ci left: 5.292045e-02	ci right 6.213942e-02	k: 574	n:10000
Cons ci ratio: 1.304623e-01	ci left: 7.737381e-02	ci right 8.827067e-02	k: 827	n:10000
KS ci ratio: 1.844739e-01	ci left: 3.920326e-02	ci right 4.726556e-02	k: 431	n:10000
WDR26   10000 perm   2 sec   (5125 perm/sec)   p_kst 4.310000e-02   p_cons 8.270000e-02   p_joint 5.740000e-02

Joint ci ratio: 1.663931e-01	ci left: 2.474968e-02	ci right 2.928924e-02	k: 539	n:20000
Cons ci ratio: 9.576406e-02	ci left: 7.358645e-02	ci right 8.103699e-02	k: 1545	n:20000
KS ci ratio: 1.329584e-01	ci left: 3.887454e-02	ci right 4.445971e-02	k: 832	n:20000
WDR26   20000 perm   4 sec   (4561 perm/sec)   p_kst 4.160000e-02   p_cons 7.725000e-02   p_joint 2.695000e-02

Joint ci ratio: 1.102994e-01	ci left: 3.816745e-02	ci right 4.265545e-02	k: 1211	n:30000
Cons ci ratio: 7.815505e-02	ci left: 7.433501e-02	ci right 8.041380e-02	k: 2320	n:30000
KS ci ratio: 1.085382e-01	ci left: 3.940081e-02	ci right 4.395516e-02	k: 1249	n:30000
WDR26   30000 perm   7 sec   (4356 perm/sec)   p_kst 4.163333e-02   p_cons 7.733333e-02   p_joint 4.036667e-02

Joint ci ratio: 1.030299e-01	ci left: 3.312280e-02	ci right 3.674512e-02	k: 1396	n:40000
Cons ci ratio: 6.814701e-02	ci left: 7.379051e-02	ci right 7.902118e-02	k: 3055	n:40000
KS ci ratio: 9.375292e-02	ci left: 3.990844e-02	ci right 4.385841e-02	k: 1674	n:40000
WDR26   40000 perm   9 sec   (4252 perm/sec)   p_kst 4.185000e-02   p_cons 7.637500e-02   p_joint 3.490000e-02

Joint ci ratio: 8.856898e-02	ci left: 3.602780e-02	ci right 3.938614e-02	k: 1884	n:50000
Cons ci ratio: 6.115222e-02	ci left: 7.361302e-02	ci right 7.827635e-02	k: 3796	n:50000
KS ci ratio: 8.380836e-02	ci left: 4.016043e-02	ci right 4.369300e-02	k: 2095	n:50000
WDR26   50000 perm   12 sec   (4162 perm/sec)   p_kst 4.190000e-02   p_cons 7.592000e-02   p_joint 3.768000e-02

Outputting figure to mutsig2_images.part000000000190/WDR26.5_2042_50000_0.0419_0.07592_0.03768.png
                gene_name: WDR26
               theta_stop: 0.089 
                    nperm: 50000 
                     p_ks: 0.042 
        ci_ks_bounds_left: 0.040 
       ci_ks_bounds_right: 0.044 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.074 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.039 

Current progress: 37 percent done.
WDR47
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.554104e-02	ci left: 4.157825e-01	ci right 4.352610e-01	k: 4255	n:10000
Cons ci ratio: 5.092200e-02	ci left: 3.625152e-01	ci right 3.815594e-01	k: 3720	n:10000
KS ci ratio: 6.247168e-02	ci left: 2.735913e-01	ci right 2.913356e-01	k: 2824	n:10000
WDR47   10000 perm   2 sec   (4708 perm/sec)   p_kst 2.824000e-01   p_cons 3.720000e-01   p_joint 4.255000e-01

Outputting figure to mutsig2_images.part000000000190/WDR47.5_2840_10000_0.2824_0.372_0.4255.png
                gene_name: WDR47
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 38 percent done.
WDR49
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.445442e-03	ci left: 9.405580e-01	ci right 9.495805e-01	k: 9452	n:10000
Cons ci ratio: 1.639828e-02	ci left: 8.439706e-01	ci right 8.580243e-01	k: 8511	n:10000
KS ci ratio: 2.119438e-02	ci left: 7.654710e-01	ci right 7.819693e-01	k: 7738	n:10000
WDR49   10000 perm   2 sec   (5498 perm/sec)   p_kst 7.738000e-01   p_cons 8.511000e-01   p_joint 9.452000e-01

Outputting figure to mutsig2_images.part000000000190/WDR49.5_2150_10000_0.7738_0.8511_0.9452.png
                gene_name: WDR49
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.95 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 40 percent done.
WDR63
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.731953e-02	ci left: 8.293074e-01	ci right 8.438960e-01	k: 8367	n:10000
KS ci ratio: 1.759120e-02	ci left: 8.249328e-01	ci right 8.396731e-01	k: 8324	n:10000
WDR63   10000 perm   2 sec   (5153 perm/sec)   p_kst 8.324000e-01   p_cons 8.367000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR63.5_2764_10000_0.8324_0.8367_1.png
                gene_name: WDR63
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
WDR75
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.373175e-02	ci left: 5.647390e-01	ci right 5.842175e-01	k: 5745	n:10000
Cons ci ratio: 4.844356e-02	ci left: 3.859978e-01	ci right 4.052631e-01	k: 3956	n:10000
KS ci ratio: 5.272375e-02	ci left: 3.465091e-01	ci right 3.653749e-01	k: 3559	n:10000
WDR75   10000 perm   2 sec   (4973 perm/sec)   p_kst 3.559000e-01   p_cons 3.956000e-01   p_joint 5.745000e-01

Outputting figure to mutsig2_images.part000000000190/WDR75.5_2577_10000_0.3559_0.3956_0.5745.png
                gene_name: WDR75
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 43 percent done.
WDR78
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.227196e-02	ci left: 2.748786e-01	ci right 2.926475e-01	k: 2837	n:10000
Cons ci ratio: 2.140611e-02	ci left: 7.619276e-01	ci right 7.785147e-01	k: 7703	n:10000
KS ci ratio: 8.742056e-02	ci left: 1.600322e-01	ci right 1.747621e-01	k: 1673	n:10000
WDR78   10000 perm   2 sec   (4480 perm/sec)   p_kst 1.673000e-01   p_cons 7.703000e-01   p_joint 2.837000e-01

Outputting figure to mutsig2_images.part000000000190/WDR78.5_2672_10000_0.1673_0.7703_0.2837.png
                gene_name: WDR78
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 45 percent done.
WASF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.548479e-02	ci left: 2.550834e-01	ci right 2.724544e-01	k: 2637	n:10000
Cons ci ratio: 3.264030e-02	ci left: 5.807868e-01	ci right 6.001604e-01	k: 5905	n:10000
KS ci ratio: 9.001671e-02	ci left: 1.521774e-01	ci right 1.666216e-01	k: 1593	n:10000
WASF3   10000 perm   2 sec   (5880 perm/sec)   p_kst 1.593000e-01   p_cons 5.905000e-01   p_joint 2.637000e-01

Outputting figure to mutsig2_images.part000000000190/WASF3.4_1541_10000_0.1593_0.5905_0.2637.png
                gene_name: WASF3
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 47 percent done.
WDR11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
Cons ci ratio: 3.708012e-02	ci left: 5.178584e-01	ci right 5.375255e-01	k: 5277	n:10000
KS ci ratio: 8.412142e-02	ci left: 1.708424e-01	ci right 1.859454e-01	k: 1783	n:10000
WDR11   10000 perm   2 sec   (4045 perm/sec)   p_kst 1.783000e-01   p_cons 5.277000e-01   p_joint 4.564000e-01

Outputting figure to mutsig2_images.part000000000190/WDR11.4_3791_10000_0.1783_0.5277_0.4564.png
                gene_name: WDR11
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 48 percent done.
WDR19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.628610e-03	ci left: 9.896106e-01	ci right 9.932945e-01	k: 9916	n:10000
KS ci ratio: 2.241456e-02	ci left: 7.450311e-01	ci right 7.620210e-01	k: 7536	n:10000
WDR19   10000 perm   2 sec   (4447 perm/sec)   p_kst 7.536000e-01   p_cons 9.916000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDR19.4_4173_10000_0.7536_0.9916_1.png
                gene_name: WDR19
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 50 percent done.
WDR70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.745679e-01	ci left: 4.379660e-02	ci right 5.226918e-02	k: 479	n:10000
Cons ci ratio: 8.701508e-02	ci left: 1.613092e-01	ci right 1.760843e-01	k: 1686	n:10000
KS ci ratio: 2.348632e-01	ci left: 2.391158e-02	ci right 3.036784e-02	k: 270	n:10000
WDR70   10000 perm   2 sec   (4672 perm/sec)   p_kst 2.700000e-02   p_cons 1.686000e-01   p_joint 4.790000e-02

Joint ci ratio: 1.268801e-01	ci left: 4.265306e-02	ci right 4.847998e-02	k: 910	n:20000
Cons ci ratio: 6.187209e-02	ci left: 1.619533e-01	ci right 1.723436e-01	k: 3342	n:20000
KS ci ratio: 1.659200e-01	ci left: 2.489359e-02	ci right 2.944527e-02	k: 542	n:20000
WDR70   20000 perm   5 sec   (4363 perm/sec)   p_kst 2.710000e-02   p_cons 1.671000e-01   p_joint 4.550000e-02

Joint ci ratio: 1.046249e-01	ci left: 4.235666e-02	ci right 4.706535e-02	k: 1340	n:30000
Cons ci ratio: 5.091225e-02	ci left: 1.607827e-01	ci right 1.692156e-01	k: 4949	n:30000
KS ci ratio: 1.368183e-01	ci left: 2.480844e-02	ci right 2.848400e-02	k: 798	n:30000
WDR70   30000 perm   7 sec   (4243 perm/sec)   p_kst 2.660000e-02   p_cons 1.649667e-01   p_joint 4.466667e-02

Joint ci ratio: 9.881879e-02	ci left: 3.597658e-02	ci right 3.974090e-02	k: 1513	n:40000
Cons ci ratio: 4.273743e-02	ci left: 1.700482e-01	ci right 1.774992e-01	k: 6950	n:40000
KS ci ratio: 1.186794e-01	ci left: 2.497221e-02	ci right 2.814703e-02	k: 1061	n:40000
WDR70   40000 perm   10 sec   (4139 perm/sec)   p_kst 2.652500e-02   p_cons 1.737500e-01   p_joint 3.782500e-02

Joint ci ratio: 9.775170e-02	ci left: 2.963478e-02	ci right 3.269997e-02	k: 1557	n:50000
Cons ci ratio: 3.825956e-02	ci left: 1.701898e-01	ci right 1.768481e-01	k: 8675	n:50000
KS ci ratio: 1.060478e-01	ci left: 2.518763e-02	ci right 2.802769e-02	k: 1329	n:50000
WDR70   50000 perm   12 sec   (4057 perm/sec)   p_kst 2.658000e-02   p_cons 1.735000e-01   p_joint 3.114000e-02

Joint ci ratio: 7.356615e-02	ci left: 4.351869e-02	ci right 4.685881e-02	k: 2710	n:60000
Cons ci ratio: 3.499360e-02	ci left: 1.699313e-01	ci right 1.760003e-01	k: 10377	n:60000
KS ci ratio: 9.655981e-02	ci left: 2.544099e-02	ci right 2.803840e-02	k: 1603	n:60000
WDR70   60000 perm   15 sec   (3975 perm/sec)   p_kst 2.671667e-02   p_cons 1.729500e-01   p_joint 4.516667e-02

Outputting figure to mutsig2_images.part000000000190/WDR70.4_2037_60000_0.026717_0.17295_0.045167.png
                gene_name: WDR70
               theta_stop: 0.097 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 52 percent done.
WDR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.108764e-01	ci left: 1.049071e-01	ci right 1.173205e-01	k: 1110	n:10000
Cons ci ratio: 2.458026e-01	ci left: 2.174701e-02	ci right 2.793403e-02	k: 247	n:10000
KS ci ratio: 4.072075e-02	ci left: 4.710641e-01	ci right 4.907470e-01	k: 4809	n:10000
WDR8   10000 perm   2 sec   (5457 perm/sec)   p_kst 4.809000e-01   p_cons 2.470000e-02   p_joint 1.110000e-01

Joint ci ratio: 1.137492e-01	ci left: 5.285323e-02	ci right 5.927660e-02	k: 1120	n:20000
Cons ci ratio: 1.800525e-01	ci left: 2.106263e-02	ci right 2.527757e-02	k: 462	n:20000
KS ci ratio: 2.872419e-02	ci left: 4.752029e-01	ci right 4.891023e-01	k: 9643	n:20000
WDR8   20000 perm   4 sec   (4839 perm/sec)   p_kst 4.821500e-01   p_cons 2.310000e-02   p_joint 5.600000e-02

Joint ci ratio: 8.752818e-02	ci left: 5.991726e-02	ci right 6.543447e-02	k: 1879	n:30000
Cons ci ratio: 1.489458e-01	ci left: 2.088364e-02	ci right 2.427636e-02	k: 676	n:30000
KS ci ratio: 2.355188e-02	ci left: 4.743987e-01	ci right 4.857385e-01	k: 14402	n:30000
WDR8   30000 perm   6 sec   (4686 perm/sec)   p_kst 4.800667e-01   p_cons 2.253333e-02   p_joint 6.263333e-02

Joint ci ratio: 5.769197e-02	ci left: 1.004819e-01	ci right 1.064758e-01	k: 4138	n:40000
Cons ci ratio: 1.201995e-01	ci left: 2.434115e-02	ci right 2.747819e-02	k: 1035	n:40000
KS ci ratio: 2.047629e-02	ci left: 4.732190e-01	ci right 4.830342e-01	k: 19125	n:40000
WDR8   40000 perm   9 sec   (4519 perm/sec)   p_kst 4.781250e-01   p_cons 2.587500e-02   p_joint 1.034500e-01

Joint ci ratio: 4.631823e-02	ci left: 1.223902e-01	ci right 1.282134e-01	k: 6264	n:50000
Cons ci ratio: 1.071706e-01	ci left: 2.466167e-02	ci right 2.747372e-02	k: 1302	n:50000
KS ci ratio: 1.835456e-02	ci left: 4.726534e-01	ci right 4.814292e-01	k: 23852	n:50000
WDR8   50000 perm   11 sec   (4429 perm/sec)   p_kst 4.770400e-01   p_cons 2.604000e-02   p_joint 1.252800e-01

Joint ci ratio: 4.906135e-02	ci left: 9.380242e-02	ci right 9.853673e-02	k: 5769	n:60000
Cons ci ratio: 9.830538e-02	ci left: 2.454610e-02	ci right 2.710005e-02	k: 1548	n:60000
KS ci ratio: 1.686744e-02	ci left: 4.697145e-01	ci right 4.777214e-01	k: 28423	n:60000
WDR8   60000 perm   14 sec   (4337 perm/sec)   p_kst 4.737167e-01   p_cons 2.580000e-02   p_joint 9.615000e-02

Outputting figure to mutsig2_images.part000000000190/WDR8.4_1431_60000_0.47372_0.0258_0.09615.png
                gene_name: WDR8
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.026 
      ci_cons_bounds_left: 0.025 
     ci_cons_bounds_right: 0.027 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.094 
    ci_joint_bounds_right: 0.099 

Current progress: 53 percent done.
VWCE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 6.251794e-02	ci left: 2.732942e-01	ci right 2.910328e-01	k: 2821	n:10000
KS ci ratio: 2.618131e-02	ci left: 6.823426e-01	ci right 7.005457e-01	k: 6915	n:10000
VWCE   10000 perm   2 sec   (5073 perm/sec)   p_kst 6.915000e-01   p_cons 2.821000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/VWCE.3_2948_10000_0.6915_0.2821_1.png
                gene_name: VWCE
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
WARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.652740e-02	ci left: 8.419327e-01	ci right 8.560633e-01	k: 8491	n:10000
KS ci ratio: 2.153307e-02	ci left: 7.598019e-01	ci right 7.764417e-01	k: 7682	n:10000
WARS2   10000 perm   2 sec   (5697 perm/sec)   p_kst 7.682000e-01   p_cons 8.491000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WARS2.3_1136_10000_0.7682_0.8491_1.png
                gene_name: WARS2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 57 percent done.
WASF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.081832e-02	ci left: 2.844871e-01	ci right 3.024334e-01	k: 2934	n:10000
Cons ci ratio: 1.679726e-02	ci left: 8.376546e-01	ci right 8.519439e-01	k: 8449	n:10000
KS ci ratio: 1.053044e-01	ci left: 1.152552e-01	ci right 1.281660e-01	k: 1216	n:10000
WASF1   10000 perm   2 sec   (5905 perm/sec)   p_kst 1.216000e-01   p_cons 8.449000e-01   p_joint 2.934000e-01

Joint ci ratio: 4.761598e-02	ci left: 2.470359e-01	ci right 2.591360e-01	k: 5061	n:20000
Cons ci ratio: 1.202143e-02	ci left: 8.365665e-01	ci right 8.467339e-01	k: 16834	n:20000
KS ci ratio: 7.511428e-02	ci left: 1.153301e-01	ci right 1.243808e-01	k: 2396	n:20000
WASF1   20000 perm   4 sec   (5146 perm/sec)   p_kst 1.198000e-01   p_cons 8.417000e-01   p_joint 2.530500e-01

Outputting figure to mutsig2_images.part000000000190/WASF1.3_1712_20000_0.1198_0.8417_0.25305.png
                gene_name: WASF1
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 58 percent done.
WDR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.754004e-02	ci left: 6.601821e-01	ci right 6.787191e-01	k: 6695	n:10000
Cons ci ratio: 4.933629e-02	ci left: 3.773383e-01	ci right 3.965276e-01	k: 3869	n:10000
KS ci ratio: 2.520369e-02	ci left: 6.984744e-01	ci right 7.164046e-01	k: 7075	n:10000
WDR1   10000 perm   2 sec   (5304 perm/sec)   p_kst 7.075000e-01   p_cons 3.869000e-01   p_joint 6.695000e-01

Outputting figure to mutsig2_images.part000000000190/WDR1.3_1881_10000_0.7075_0.3869_0.6695.png
                gene_name: WDR1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 60 percent done.
WDR13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
Cons ci ratio: 2.487530e-02	ci left: 7.039218e-01	ci right 7.217540e-01	k: 7129	n:10000
KS ci ratio: 9.913811e-02	ci left: 1.284572e-01	ci right 1.419561e-01	k: 1351	n:10000
WDR13   10000 perm   2 sec   (6602 perm/sec)   p_kst 1.351000e-01   p_cons 7.129000e-01   p_joint 2.275000e-01

Outputting figure to mutsig2_images.part000000000190/WDR13.3_1494_10000_0.1351_0.7129_0.2275.png
                gene_name: WDR13
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 62 percent done.
WDR44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.721013e-02	ci left: 3.983455e-01	ci right 4.177081e-01	k: 4080	n:10000
Cons ci ratio: 1.030047e-01	ci left: 1.199465e-01	ci right 1.330719e-01	k: 1264	n:10000
KS ci ratio: 6.016490e-02	ci left: 2.889463e-01	ci right 3.069715e-01	k: 2979	n:10000
WDR44   10000 perm   2 sec   (4668 perm/sec)   p_kst 2.979000e-01   p_cons 1.264000e-01   p_joint 4.080000e-01

Joint ci ratio: 5.264454e-02	ci left: 2.113037e-01	ci right 2.227787e-01	k: 4340	n:20000
Cons ci ratio: 7.223315e-02	ci left: 1.236945e-01	ci right 1.330139e-01	k: 2566	n:20000
KS ci ratio: 4.235077e-02	ci left: 2.935044e-01	ci right 3.062539e-01	k: 5997	n:20000
WDR44   20000 perm   4 sec   (4447 perm/sec)   p_kst 2.998500e-01   p_cons 1.283000e-01   p_joint 2.170000e-01

Outputting figure to mutsig2_images.part000000000190/WDR44.3_2822_20000_0.29985_0.1283_0.217.png
                gene_name: WDR44
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 63 percent done.
WDR45L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.068535e-02	ci left: 7.739786e-01	ci right 7.902567e-01	k: 7822	n:10000
Cons ci ratio: 2.405090e-02	ci left: 7.176482e-01	ci right 7.352197e-01	k: 7265	n:10000
KS ci ratio: 2.305411e-02	ci left: 7.343154e-01	ci right 7.515429e-01	k: 7430	n:10000
WDR45L   10000 perm   2 sec   (6161 perm/sec)   p_kst 7.430000e-01   p_cons 7.265000e-01   p_joint 7.822000e-01

Outputting figure to mutsig2_images.part000000000190/WDR45L.3_1075_10000_0.743_0.7265_0.7822.png
                gene_name: WDR45L
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 65 percent done.
WDR5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.930804e-02	ci left: 1.280657e-01	ci right 1.415478e-01	k: 1347	n:10000
Cons ci ratio: 3.007699e-02	ci left: 6.198475e-01	ci right 6.388771e-01	k: 6294	n:10000
KS ci ratio: 1.564030e-01	ci left: 5.446081e-02	ci right 6.379808e-02	k: 590	n:10000
WDR5B   10000 perm   2 sec   (5435 perm/sec)   p_kst 5.900000e-02   p_cons 6.294000e-01   p_joint 1.347000e-01

Joint ci ratio: 6.333366e-02	ci left: 1.556348e-01	ci right 1.658640e-01	k: 3214	n:20000
Cons ci ratio: 2.136677e-02	ci left: 6.205055e-01	ci right 6.339575e-01	k: 12545	n:20000
KS ci ratio: 1.102002e-01	ci left: 5.621205e-02	ci right 6.281674e-02	k: 1189	n:20000
WDR5B   20000 perm   4 sec   (5074 perm/sec)   p_kst 5.945000e-02   p_cons 6.272500e-01   p_joint 1.607000e-01

Joint ci ratio: 6.199394e-02	ci left: 1.139424e-01	ci right 1.212652e-01	k: 3527	n:30000
Cons ci ratio: 1.735737e-02	ci left: 6.241399e-01	ci right 6.351017e-01	k: 18889	n:30000
KS ci ratio: 9.041039e-02	ci left: 5.629459e-02	ci right 6.165788e-02	k: 1768	n:30000
WDR5B   30000 perm   6 sec   (4914 perm/sec)   p_kst 5.893333e-02   p_cons 6.296333e-01   p_joint 1.175667e-01

Outputting figure to mutsig2_images.part000000000190/WDR5B.3_997_30000_0.058933_0.62963_0.11757.png
                gene_name: WDR5B
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 67 percent done.
WDR65
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.128802e-02	ci left: 6.011627e-01	ci right 6.203727e-01	k: 6108	n:10000
Cons ci ratio: 7.681810e-03	ci left: 9.592178e-01	ci right 9.667094e-01	k: 9631	n:10000
KS ci ratio: 4.729818e-02	ci left: 3.974490e-01	ci right 4.168051e-01	k: 4071	n:10000
WDR65   10000 perm   2 sec   (5298 perm/sec)   p_kst 4.071000e-01   p_cons 9.631000e-01   p_joint 6.108000e-01

Outputting figure to mutsig2_images.part000000000190/WDR65.3_2137_10000_0.4071_0.9631_0.6108.png
                gene_name: WDR65
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 68 percent done.
VWC2L
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.143038e-02	ci left: 9.162609e-01	ci right 9.268919e-01	k: 9217	n:10000
Cons ci ratio: 4.869771e-02	ci left: 3.835091e-01	ci right 4.027532e-01	k: 3931	n:10000
KS ci ratio: 3.739367e-02	ci left: 5.136554e-01	ci right 5.333309e-01	k: 5235	n:10000
VWC2L   10000 perm   2 sec   (6186 perm/sec)   p_kst 5.235000e-01   p_cons 3.931000e-01   p_joint 9.217000e-01

Outputting figure to mutsig2_images.part000000000190/VWC2L.2_681_10000_0.5235_0.3931_0.9217.png
                gene_name: VWC2L
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 70 percent done.
WARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.981969e-02	ci left: 6.238676e-01	ci right 6.428546e-01	k: 6334	n:10000
KS ci ratio: 1.377760e-02	ci left: 8.838059e-01	ci right 8.961658e-01	k: 8901	n:10000
WARS   10000 perm   2 sec   (6171 perm/sec)   p_kst 8.901000e-01   p_cons 6.334000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WARS.2_1456_10000_0.8901_0.6334_1.png
                gene_name: WARS
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
WASF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.150929e-02	ci left: 9.152306e-01	ci right 9.259229e-01	k: 9207	n:10000
Cons ci ratio: 1.177263e-01	ci left: 9.389515e-02	ci right 1.057391e-01	k: 997	n:10000
KS ci ratio: 3.029653e-02	ci left: 6.164309e-01	ci right 6.354957e-01	k: 6260	n:10000
WASF2   10000 perm   2 sec   (6167 perm/sec)   p_kst 6.260000e-01   p_cons 9.970000e-02   p_joint 9.207000e-01

Joint ci ratio: 3.057036e-02	ci left: 4.442362e-01	ci right 4.580781e-01	k: 9023	n:20000
Cons ci ratio: 8.413924e-02	ci left: 9.376599e-02	ci right 1.020513e-01	k: 1957	n:20000
KS ci ratio: 2.176842e-02	ci left: 6.117261e-01	ci right 6.252395e-01	k: 12370	n:20000
WASF2   20000 perm   4 sec   (5404 perm/sec)   p_kst 6.185000e-01   p_cons 9.785000e-02   p_joint 4.511500e-01

Outputting figure to mutsig2_images.part000000000190/WASF2.2_1529_20000_0.6185_0.09785_0.45115.png
                gene_name: WASF2
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 73 percent done.
WBP11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.181557e-02	ci left: 2.778498e-01	ci right 2.956746e-01	k: 2867	n:10000
Cons ci ratio: 3.688720e-02	ci left: 5.204606e-01	ci right 5.401218e-01	k: 5303	n:10000
KS ci ratio: 7.847161e-02	ci left: 1.918044e-01	ci right 2.075710e-01	k: 1996	n:10000
WBP11   10000 perm   2 sec   (5321 perm/sec)   p_kst 1.996000e-01   p_cons 5.303000e-01   p_joint 2.867000e-01

Outputting figure to mutsig2_images.part000000000190/WBP11.2_1970_10000_0.1996_0.5303_0.2867.png
                gene_name: WBP11
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 75 percent done.
WBP2NL
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.816114e-02	ci left: 3.887854e-01	ci right 4.080738e-01	k: 3984	n:10000
Cons ci ratio: 3.838059e-03	ci left: 9.885089e-01	ci right 9.923974e-01	k: 9906	n:10000
KS ci ratio: 1.930388e-01	ci left: 3.576701e-02	ci right 4.350411e-02	k: 395	n:10000
WBP2NL   10000 perm   2 sec   (6394 perm/sec)   p_kst 3.950000e-02   p_cons 9.906000e-01   p_joint 3.984000e-01

Joint ci ratio: 3.043493e-02	ci left: 4.464329e-01	ci right 4.602807e-01	k: 9067	n:20000
Cons ci ratio: 2.677968e-03	ci left: 9.893780e-01	ci right 9.920765e-01	k: 19816	n:20000
KS ci ratio: 1.383310e-01	ci left: 3.592413e-02	ci right 4.131107e-02	k: 771	n:20000
WBP2NL   20000 perm   4 sec   (5542 perm/sec)   p_kst 3.855000e-02   p_cons 9.908000e-01   p_joint 4.533500e-01

Joint ci ratio: 1.670198e-02	ci left: 6.419628e-01	ci right 6.528087e-01	k: 19422	n:30000
Cons ci ratio: 2.212346e-03	ci left: 9.894073e-01	ci right 9.916295e-01	k: 29717	n:30000
KS ci ratio: 1.124436e-01	ci left: 3.674009e-02	ci right 4.114977e-02	k: 1167	n:30000
WBP2NL   30000 perm   6 sec   (5237 perm/sec)   p_kst 3.890000e-02   p_cons 9.905667e-01   p_joint 6.474000e-01

Joint ci ratio: 2.723356e-02	ci left: 3.365529e-01	ci right 3.458701e-01	k: 13648	n:40000
Cons ci ratio: 1.906601e-03	ci left: 9.896579e-01	ci right 9.915699e-01	k: 39626	n:40000
KS ci ratio: 9.696979e-02	ci left: 3.734358e-02	ci right 4.117368e-02	k: 1569	n:40000
WBP2NL   40000 perm   8 sec   (5051 perm/sec)   p_kst 3.922500e-02   p_cons 9.906500e-01   p_joint 3.412000e-01

Outputting figure to mutsig2_images.part000000000190/WBP2NL.2_954_40000_0.039225_0.99065_0.3412.png
                gene_name: WBP2NL
               theta_stop: 0.097 
                    nperm: 40000 
                     p_ks: 0.039 
        ci_ks_bounds_left: 0.037 
       ci_ks_bounds_right: 0.041 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 77 percent done.
WBP5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.313530e-02	ci left: 5.734637e-01	ci right 5.928878e-01	k: 5832	n:10000
Cons ci ratio: 4.214176e-02	ci left: 4.539876e-01	ci right 4.736335e-01	k: 4638	n:10000
KS ci ratio: 6.696667e-02	ci left: 2.465785e-01	ci right 2.637644e-01	k: 2551	n:10000
WBP5   10000 perm   2 sec   (6456 perm/sec)   p_kst 2.551000e-01   p_cons 4.638000e-01   p_joint 5.832000e-01

Outputting figure to mutsig2_images.part000000000190/WBP5.2_319_10000_0.2551_0.4638_0.5832.png
                gene_name: WBP5
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 78 percent done.
WDFY1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.060454e-03	ci left: 9.810225e-01	ci right 9.860902e-01	k: 9837	n:10000
Cons ci ratio: 2.407510e-02	ci left: 7.172444e-01	ci right 7.348238e-01	k: 7261	n:10000
KS ci ratio: 4.927397e-02	ci left: 3.779354e-01	ci right 3.971302e-01	k: 3875	n:10000
WDFY1   10000 perm   2 sec   (6053 perm/sec)   p_kst 3.875000e-01   p_cons 7.261000e-01   p_joint 9.837000e-01

Outputting figure to mutsig2_images.part000000000190/WDFY1.2_1281_10000_0.3875_0.7261_0.9837.png
                gene_name: WDFY1
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 80 percent done.
WDFY2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.878641e-03	ci left: 9.882892e-01	ci right 9.922172e-01	k: 9904	n:10000
KS ci ratio: 2.731636e-02	ci left: 6.638068e-01	ci right 6.822923e-01	k: 6731	n:10000
WDFY2   10000 perm   2 sec   (6410 perm/sec)   p_kst 6.731000e-01   p_cons 9.904000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000190/WDFY2.2_1251_10000_0.6731_0.9904_1.png
                gene_name: WDFY2
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
WDR25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.027713e-02	ci left: 6.167323e-01	ci right 6.357941e-01	k: 6263	n:10000
Cons ci ratio: 4.909800e-02	ci left: 3.796273e-01	ci right 3.988373e-01	k: 3892	n:10000
KS ci ratio: 3.301959e-02	ci left: 5.751689e-01	ci right 5.945816e-01	k: 5849	n:10000
WDR25   10000 perm   2 sec   (6094 perm/sec)   p_kst 5.849000e-01   p_cons 3.892000e-01   p_joint 6.263000e-01

Outputting figure to mutsig2_images.part000000000190/WDR25.2_1659_10000_0.5849_0.3892_0.6263.png
                gene_name: WDR25
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 83 percent done.
WDR27
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.228785e-02	ci left: 7.471549e-01	ci right 7.640960e-01	k: 7557	n:10000
Cons ci ratio: 1.865273e-02	ci left: 8.076544e-01	ci right 8.229615e-01	k: 8154	n:10000
KS ci ratio: 5.886768e-02	ci left: 2.980661e-01	ci right 3.162464e-01	k: 3071	n:10000
WDR27   10000 perm   2 sec   (5524 perm/sec)   p_kst 3.071000e-01   p_cons 8.154000e-01   p_joint 7.557000e-01

Outputting figure to mutsig2_images.part000000000190/WDR27.2_2670_10000_0.3071_0.8154_0.7557.png
                gene_name: WDR27
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 85 percent done.
WDR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.974550e-03	ci left: 9.658346e-01	ci right 9.726884e-01	k: 9694	n:10000
Cons ci ratio: 6.198219e-02	ci left: 2.767603e-01	ci right 2.945647e-01	k: 2856	n:10000
KS ci ratio: 3.101891e-02	ci left: 6.052801e-01	ci right 6.244529e-01	k: 6149	n:10000
WDR4   10000 perm   1 sec   (6773 perm/sec)   p_kst 6.149000e-01   p_cons 2.856000e-01   p_joint 9.694000e-01

Outputting figure to mutsig2_images.part000000000190/WDR4.2_1283_10000_0.6149_0.2856_0.9694.png
                gene_name: WDR4
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 87 percent done.
WDR41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.759606e-02	ci left: 6.592760e-01	ci right 6.778257e-01	k: 6686	n:10000
Cons ci ratio: 3.758897e-02	ci left: 5.110539e-01	ci right 5.307340e-01	k: 5209	n:10000
KS ci ratio: 8.041364e-02	ci left: 1.842223e-01	ci right 1.997575e-01	k: 1919	n:10000
WDR41   10000 perm   2 sec   (6302 perm/sec)   p_kst 1.919000e-01   p_cons 5.209000e-01   p_joint 6.686000e-01

Outputting figure to mutsig2_images.part000000000190/WDR41.2_1432_10000_0.1919_0.5209_0.6686.png
                gene_name: WDR41
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 88 percent done.
WDR45
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.780619e-02	ci left: 3.058014e-01	ci right 3.241065e-01	k: 3149	n:10000
Cons ci ratio: 8.978231e-02	ci left: 1.528644e-01	ci right 1.673342e-01	k: 1600	n:10000
KS ci ratio: 6.108332e-02	ci left: 2.827037e-01	ci right 3.006178e-01	k: 2916	n:10000
WDR45   10000 perm   2 sec   (6597 perm/sec)   p_kst 2.916000e-01   p_cons 1.600000e-01   p_joint 3.149000e-01

Outputting figure to mutsig2_images.part000000000190/WDR45.2_1126_10000_0.2916_0.16_0.3149.png
                gene_name: WDR45
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 90 percent done.
WDR48
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.298328e-02	ci left: 8.951842e-01	ci right 9.069810e-01	k: 9012	n:10000
Cons ci ratio: 4.256777e-02	ci left: 4.489967e-01	ci right 4.686273e-01	k: 4588	n:10000
KS ci ratio: 1.199829e-02	ci left: 9.087451e-01	ci right 9.198122e-01	k: 9144	n:10000
WDR48   10000 perm   2 sec   (5820 perm/sec)   p_kst 9.144000e-01   p_cons 4.588000e-01   p_joint 9.012000e-01

Outputting figure to mutsig2_images.part000000000190/WDR48.2_2110_10000_0.9144_0.4588_0.9012.png
                gene_name: WDR48
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 92 percent done.
WDR55
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.716131e-02	ci left: 3.988435e-01	ci right 4.182098e-01	k: 4085	n:10000
Cons ci ratio: 6.061366e-02	ci left: 2.858743e-01	ci right 3.038454e-01	k: 2948	n:10000
KS ci ratio: 2.852906e-02	ci left: 6.442810e-01	ci right 6.630294e-01	k: 6537	n:10000
WDR55   10000 perm   2 sec   (6488 perm/sec)   p_kst 6.537000e-01   p_cons 2.948000e-01   p_joint 4.085000e-01

Outputting figure to mutsig2_images.part000000000190/WDR55.2_1180_10000_0.6537_0.2948_0.4085.png
                gene_name: WDR55
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 93 percent done.
WDR67
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.161915e-02	ci left: 9.137886e-01	ci right 9.245657e-01	k: 9193	n:10000
Cons ci ratio: 2.757738e-02	ci left: 6.595781e-01	ci right 6.781235e-01	k: 6689	n:10000
KS ci ratio: 5.232375e-02	ci left: 3.499877e-01	ci right 3.688943e-01	k: 3594	n:10000
WDR67   10000 perm   2 sec   (4851 perm/sec)   p_kst 3.594000e-01   p_cons 6.689000e-01   p_joint 9.193000e-01

Outputting figure to mutsig2_images.part000000000190/WDR67.2_3289_10000_0.3594_0.6689_0.9193.png
                gene_name: WDR67
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 95 percent done.
WDR76
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.204951e-01	ci left: 8.990526e-02	ci right 1.015315e-01	k: 956	n:10000
Cons ci ratio: 2.366646e-01	ci left: 2.353468e-02	ci right 2.994503e-02	k: 266	n:10000
KS ci ratio: 4.664801e-02	ci left: 4.041232e-01	ci right 4.235270e-01	k: 4138	n:10000
WDR76   10000 perm   2 sec   (6121 perm/sec)   p_kst 4.138000e-01   p_cons 2.660000e-02   p_joint 9.560000e-02

Joint ci ratio: 6.121368e-02	ci left: 1.649161e-01	ci right 1.753800e-01	k: 3402	n:20000
Cons ci ratio: 1.662350e-01	ci left: 2.479765e-02	ci right 2.934125e-02	k: 540	n:20000
KS ci ratio: 3.297120e-02	ci left: 4.072115e-01	ci right 4.209135e-01	k: 8281	n:20000
WDR76   20000 perm   4 sec   (5327 perm/sec)   p_kst 4.140500e-01   p_cons 2.700000e-02   p_joint 1.701000e-01

Joint ci ratio: 5.006672e-02	ci left: 1.654018e-01	ci right 1.739289e-01	k: 5089	n:30000
Cons ci ratio: 1.338363e-01	ci left: 2.593660e-02	ci right 2.968892e-02	k: 833	n:30000
KS ci ratio: 2.675870e-02	ci left: 4.114122e-01	ci right 4.226039e-01	k: 12510	n:30000
WDR76   30000 perm   6 sec   (4997 perm/sec)   p_kst 4.170000e-01   p_cons 2.776667e-02   p_joint 1.696333e-01

Joint ci ratio: 2.853230e-02	ci left: 3.160021e-01	ci right 3.251740e-01	k: 12823	n:40000
Cons ci ratio: 1.149527e-01	ci left: 2.662382e-02	ci right 2.989514e-02	k: 1129	n:40000
KS ci ratio: 2.319076e-02	ci left: 4.118123e-01	ci right 4.214998e-01	k: 16666	n:40000
WDR76   40000 perm   8 sec   (4852 perm/sec)   p_kst 4.166500e-01   p_cons 2.822500e-02   p_joint 3.205750e-01

Joint ci ratio: 2.547445e-02	ci left: 3.172671e-01	ci right 3.254736e-01	k: 16068	n:50000
Cons ci ratio: 1.022412e-01	ci left: 2.709793e-02	ci right 3.003715e-02	k: 1427	n:50000
KS ci ratio: 2.071237e-02	ci left: 4.130326e-01	ci right 4.216970e-01	k: 20868	n:50000
WDR76   50000 perm   11 sec   (4701 perm/sec)   p_kst 4.173600e-01   p_cons 2.854000e-02   p_joint 3.213600e-01

Joint ci ratio: 2.365232e-02	ci left: 3.103037e-01	ci right 3.177476e-01	k: 18841	n:60000
Cons ci ratio: 9.287664e-02	ci left: 2.749258e-02	ci right 3.018659e-02	k: 1729	n:60000
KS ci ratio: 1.887457e-02	ci left: 4.142655e-01	ci right 4.221758e-01	k: 25093	n:60000
WDR76   60000 perm   13 sec   (4598 perm/sec)   p_kst 4.182167e-01   p_cons 2.881667e-02   p_joint 3.140167e-01

Outputting figure to mutsig2_images.part000000000190/WDR76.2_1933_60000_0.41822_0.028817_0.31402.png
                gene_name: WDR76
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.027 
     ci_cons_bounds_right: 0.030 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 97 percent done.
WDR86
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.933363e-02	ci left: 6.315079e-01	ci right 6.504099e-01	k: 6410	n:10000
Cons ci ratio: 3.990594e-02	ci left: 4.811556e-01	ci right 5.008497e-01	k: 4910	n:10000
KS ci ratio: 4.480377e-02	ci left: 4.237578e-01	ci right 4.432810e-01	k: 4335	n:10000
WDR86   10000 perm   2 sec   (6613 perm/sec)   p_kst 4.335000e-01   p_cons 4.910000e-01   p_joint 6.410000e-01

Outputting figure to mutsig2_images.part000000000190/WDR86.2_1155_10000_0.4335_0.491_0.641.png
                gene_name: WDR86
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 98 percent done.
WDR88
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.083417e-02	ci left: 9.238935e-01	ci right 9.340549e-01	k: 9291	n:10000
Cons ci ratio: 2.832145e-02	ci left: 6.476011e-01	ci right 6.663073e-01	k: 6570	n:10000
KS ci ratio: 1.033297e-02	ci left: 9.300936e-01	ci right 9.398511e-01	k: 9351	n:10000
WDR88   10000 perm   2 sec   (6291 perm/sec)   p_kst 9.351000e-01   p_cons 6.570000e-01   p_joint 9.291000e-01

Outputting figure to mutsig2_images.part000000000190/WDR88.2_1463_10000_0.9351_0.657_0.9291.png
                gene_name: WDR88
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000190
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 190 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1426>
Subject: Job 9894205: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1426>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000191> was used as the working directory.
Started at Sat Oct  6 00:35:44 2012
Results reported at Sat Oct  6 00:54:01 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000191.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000191.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 191  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000191.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1211.58 sec.
    Max Memory :      3590 MB
    Max Swap   :      6081 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
191
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 191
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 191: processing genes 17130 - 17219
Calculating significance of each gene.
Using projection method.
17130	WDR89	8.218837e-01
17131	WDR90	9.772164e-01
17132	WDR91	7.190070e-02
17133	WDR92	9.240005e-02
17134	WDR93	2.639599e-01
17135	WDSUB1	6.747637e-02
In gene WDTC1 the following bins exceed PROBCAP:
    READ-AG-3580	categ 6	N = 2084    n = 1	mu =   1.72e-07
17136	WDTC1	5.759217e-01
17137	WDYHV1	6.069624e-01
17138	WEE1	4.952101e-01
17139	WEE2	7.964939e-01
17140	WFDC1	2.882689e-01
17141	WFDC10A	1
17142	WFDC10B	1
17143	WFDC11	1
17144	WFDC12	1.999577e-01
17145	WFDC13	1
17146	WFDC2	1
17147	WFDC3	4.220284e-01
17148	WFDC5	3.895891e-01
17149	WFDC6	1
17150	WFDC8	1.779660e-01
17151	WFDC9	2.643172e-01
17152	WFIKKN1	1
17153	WFIKKN2	9.676599e-01
In gene WFS1 the following bins exceed PROBCAP:
    COAD-AA-A00K	categ 6	N = 2017    n = 1	mu =   5.86e-07
17154	WFS1	9.572047e-01
17155	WHAMM	5.345435e-01
17156	WHSC1	7.533272e-01
17157	WHSC1L1	8.903728e-01
17158	WHSC2	7.622760e-01
17159	WIBG	6.303372e-01
17160	WIF1	2.804622e-01
17161	WIPF1	1.359096e-01
17162	WIPF2	2.272237e-01
17163	WIPF3	6.840446e-01
17164	WIPI1	6.105780e-01
17165	WIPI2	5.685436e-01
17166	WISP1	4.806074e-01
17167	WISP2	1
17168	WISP3	5.289431e-01
In gene WIZ the following bins exceed PROBCAP:
    READ-AG-3883	categ 6	N = 2357    n = 1	mu =   4.60e-07
17169	WIZ	4.786993e-01
17170	WLS	8.214424e-01
17171	WNK1	9.026121e-01
17172	WNK2	9.925323e-01
17173	WNK3	1.644998e-02
17174	WNK4	9.918682e-01
17175	WNT1	8.155511e-01
17176	WNT10A	1
17177	WNT10B	2.368994e-01
17178	WNT11	1.924417e-01
17179	WNT16	5.937833e-01
17180	WNT2	6.397995e-01
17181	WNT2B	5.167062e-01
17182	WNT3	7.689064e-02
17183	WNT3A	6.500984e-01
17184	WNT4	8.463540e-01
17185	WNT5A	6.691400e-01
17186	WNT5B	1
17187	WNT6	6.930457e-01
17188	WNT7A	5.082964e-01
17189	WNT7B	5.921404e-01
17190	WNT8A	7.239803e-01
17191	WNT8B	1
17192	WNT9A	6.143304e-01
17193	WNT9B	6.574929e-01
17194	WRAP53	1
17195	WRB	1
17196	WRN	1.837884e-01
17197	WRNIP1	8.350911e-01
17198	WSB1	1
17199	WSB2	7.959392e-01
17200	WSCD1	1.651900e-01
17201	WSCD2	1.507766e-02
17202	WT1	2.690867e-02
17203	WTAP	5.044934e-01
17204	WTIP	5.671075e-01
17205	WWC1	4.732298e-01
17206	WWC2	9.953380e-01
17207	WWC3	8.043588e-01
17208	WWOX	3.963765e-02
17209	WWP1	2.162122e-01
17210	WWP2	9.008752e-01
17211	WWTR1	3.704438e-01
17212	XAB2	9.980501e-01
17213	XAF1	4.396453e-01
17214	XAGE3	1
17215	XAGE5	1
17216	XBP1	1.293268e-01
17217	XCL1	1
17218	XCL2	2.356487e-01
17219	XCR1	7.949342e-01
Done

Running MutSig 2:
Scatter job 191: processing genes 17130 - 17219
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
WNK3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.949261e-02	ci left: 3.758456e-01	ci right 3.950212e-01	k: 3854	n:10000
Cons ci ratio: 3.519609e-02	ci left: 5.437922e-01	ci right 5.633765e-01	k: 5536	n:10000
KS ci ratio: 6.728524e-02	ci left: 2.447989e-01	ci right 2.619450e-01	k: 2533	n:10000
WNK3   10000 perm   4 sec   (2721 perm/sec)   p_kst 2.533000e-01   p_cons 5.536000e-01   p_joint 3.854000e-01

Outputting figure to mutsig2_images.part000000000191/WNK3.12_5495_10000_0.2533_0.5536_0.3854.png
                gene_name: WNK3
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 2 percent done.
WRN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.501604e-02	ci left: 2.578534e-01	ci right 2.752827e-01	k: 2665	n:10000
Cons ci ratio: 3.025773e-02	ci left: 6.170337e-01	ci right 6.360925e-01	k: 6266	n:10000
KS ci ratio: 9.152397e-02	ci left: 1.478599e-01	ci right 1.621417e-01	k: 1549	n:10000
WRN   10000 perm   3 sec   (3836 perm/sec)   p_kst 1.549000e-01   p_cons 6.266000e-01   p_joint 2.665000e-01

Outputting figure to mutsig2_images.part000000000191/WRN.12_4435_10000_0.1549_0.6266_0.2665.png
                gene_name: WRN
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.28 

Current progress: 4 percent done.
WNK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.085809e-01	ci left: 1.090053e-01	ci right 1.216198e-01	k: 1152	n:10000
Cons ci ratio: 3.458089e-02	ci left: 5.525096e-01	ci right 5.720541e-01	k: 5623	n:10000
KS ci ratio: 1.666916e-01	ci left: 4.801742e-02	ci right 5.684561e-02	k: 523	n:10000
WNK1   10000 perm   4 sec   (2857 perm/sec)   p_kst 5.230000e-02   p_cons 5.623000e-01   p_joint 1.152000e-01

Joint ci ratio: 8.129255e-02	ci left: 9.990035e-02	ci right 1.084151e-01	k: 2082	n:20000
Cons ci ratio: 2.464322e-02	ci left: 5.515850e-01	ci right 5.653980e-01	k: 11170	n:20000
KS ci ratio: 1.191975e-01	ci left: 4.823440e-02	ci right 5.439688e-02	k: 1025	n:20000
WNK1   20000 perm   8 sec   (2662 perm/sec)   p_kst 5.125000e-02   p_cons 5.585000e-01   p_joint 1.041000e-01

Joint ci ratio: 6.167737e-02	ci left: 1.149947e-01	ci right 1.223460e-01	k: 3559	n:30000
Cons ci ratio: 2.008076e-02	ci left: 5.538601e-01	ci right 5.651284e-01	k: 16785	n:30000
KS ci ratio: 9.633932e-02	ci left: 4.977495e-02	ci right 5.484553e-02	k: 1568	n:30000
WNK1   30000 perm   12 sec   (2591 perm/sec)   p_kst 5.226667e-02   p_cons 5.595000e-01   p_joint 1.186333e-01

Outputting figure to mutsig2_images.part000000000191/WNK1.10_8763_30000_0.052267_0.5595_0.11863.png
                gene_name: WNK1
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 6 percent done.
WDR91
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.531331e-02	ci left: 6.966589e-01	ci right 7.146211e-01	k: 7057	n:10000
KS ci ratio: 9.047443e-03	ci left: 9.450255e-01	ci right 9.537104e-01	k: 9495	n:10000
WDR91   10000 perm   2 sec   (4707 perm/sec)   p_kst 9.495000e-01   p_cons 7.057000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WDR91.9_2304_10000_0.9495_0.7057_1.png
                gene_name: WDR91
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 8 percent done.
WSCD2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.931186e-02	ci left: 4.886519e-01	ci right 5.083490e-01	k: 4985	n:10000
Cons ci ratio: 7.082374e-02	ci left: 2.261254e-01	ci right 2.428295e-01	k: 2344	n:10000
KS ci ratio: 2.779552e-02	ci left: 6.560548e-01	ci right 6.746488e-01	k: 6654	n:10000
WSCD2   10000 perm   2 sec   (5230 perm/sec)   p_kst 6.654000e-01   p_cons 2.344000e-01   p_joint 4.985000e-01

Outputting figure to mutsig2_images.part000000000191/WSCD2.8_1730_10000_0.6654_0.2344_0.4985.png
                gene_name: WSCD2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 9 percent done.
WWP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.525475e-02	ci left: 3.254505e-01	ci right 3.440459e-01	k: 3347	n:10000
Cons ci ratio: 1.008262e-01	ci left: 1.246409e-01	ci right 1.379747e-01	k: 1312	n:10000
KS ci ratio: 4.351411e-02	ci left: 4.381199e-01	ci right 4.577105e-01	k: 4479	n:10000
WWP1   10000 perm   2 sec   (4929 perm/sec)   p_kst 4.479000e-01   p_cons 1.312000e-01   p_joint 3.347000e-01

Joint ci ratio: 4.214493e-02	ci left: 2.955417e-01	ci right 3.083159e-01	k: 6038	n:20000
Cons ci ratio: 6.732100e-02	ci left: 1.400485e-01	ci right 1.498550e-01	k: 2898	n:20000
KS ci ratio: 3.075621e-02	ci left: 4.412408e-01	ci right 4.550743e-01	k: 8963	n:20000
WWP1   20000 perm   5 sec   (4403 perm/sec)   p_kst 4.481500e-01   p_cons 1.449000e-01   p_joint 3.019000e-01

Outputting figure to mutsig2_images.part000000000191/WWP1.8_2861_20000_0.44815_0.1449_0.3019.png
                gene_name: WWP1
               theta_stop: 0.067 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 11 percent done.
WDSUB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.506921e-02	ci left: 3.269398e-01	ci right 3.455557e-01	k: 3362	n:10000
KS ci ratio: 1.568697e-02	ci left: 8.550847e-01	ci right 8.687038e-01	k: 8620	n:10000
WDSUB1   10000 perm   2 sec   (5206 perm/sec)   p_kst 8.620000e-01   p_cons 3.362000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WDSUB1.7_1471_10000_0.862_0.3362_1.png
                gene_name: WDSUB1
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 13 percent done.
WHSC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.964204e-01	ci left: 3.452820e-02	ci right 4.214376e-02	k: 382	n:10000
Cons ci ratio: 1.542902e-02	ci left: 8.590646e-01	ci right 8.725215e-01	k: 8659	n:10000
KS ci ratio: 3.376227e-01	ci left: 1.105573e-02	ci right 1.563427e-02	k: 132	n:10000
WHSC1   10000 perm   3 sec   (3960 perm/sec)   p_kst 1.320000e-02   p_cons 8.659000e-01   p_joint 3.820000e-02

Joint ci ratio: 1.535677e-01	ci left: 2.912262e-02	ci right 3.401482e-02	k: 630	n:20000
Cons ci ratio: 1.100747e-02	ci left: 8.589684e-01	ci right 8.685255e-01	k: 17276	n:20000
KS ci ratio: 2.281111e-01	ci left: 1.288916e-02	ci right 1.625414e-02	k: 290	n:20000
WHSC1   20000 perm   6 sec   (3469 perm/sec)   p_kst 1.450000e-02   p_cons 8.638000e-01   p_joint 3.150000e-02

Joint ci ratio: 9.903252e-02	ci left: 4.717018e-02	ci right 5.211750e-02	k: 1488	n:30000
Cons ci ratio: 8.994961e-03	ci left: 8.596644e-01	ci right 8.674651e-01	k: 25908	n:30000
KS ci ratio: 1.887932e-01	ci left: 1.282815e-02	ci right 1.553381e-02	k: 424	n:30000
WHSC1   30000 perm   9 sec   (3463 perm/sec)   p_kst 1.413333e-02   p_cons 8.636000e-01   p_joint 4.960000e-02

Joint ci ratio: 9.652272e-02	ci left: 3.768543e-02	ci right 4.153177e-02	k: 1583	n:40000
Cons ci ratio: 7.808760e-03	ci left: 8.596168e-01	ci right 8.663804e-01	k: 34521	n:40000
KS ci ratio: 1.633056e-01	ci left: 1.303941e-02	ci right 1.538189e-02	k: 567	n:40000
WHSC1   40000 perm   12 sec   (3441 perm/sec)   p_kst 1.417500e-02   p_cons 8.630250e-01   p_joint 3.957500e-02

Joint ci ratio: 9.604689e-02	ci left: 3.068941e-02	ci right 3.380521e-02	k: 1611	n:50000
Cons ci ratio: 6.998632e-03	ci left: 8.594908e-01	ci right 8.655470e-01	k: 43127	n:50000
KS ci ratio: 1.441215e-01	ci left: 1.352833e-02	ci right 1.564858e-02	k: 728	n:50000
WHSC1   50000 perm   15 sec   (3404 perm/sec)   p_kst 1.456000e-02   p_cons 8.625400e-01   p_joint 3.222000e-02

Joint ci ratio: 7.431571e-02	ci left: 4.266734e-02	ci right 4.597692e-02	k: 2658	n:60000
Cons ci ratio: 6.245023e-03	ci left: 8.651141e-01	ci right 8.705502e-01	k: 52071	n:60000
KS ci ratio: 1.309431e-01	ci left: 1.375222e-02	ci right 1.569514e-02	k: 882	n:60000
WHSC1   60000 perm   18 sec   (3368 perm/sec)   p_kst 1.470000e-02   p_cons 8.678500e-01   p_joint 4.430000e-02

Joint ci ratio: 7.135820e-02	ci left: 3.985188e-02	ci right 4.281487e-02	k: 2892	n:70000
Cons ci ratio: 5.753086e-03	ci left: 8.664637e-01	ci right 8.714771e-01	k: 60829	n:70000
KS ci ratio: 1.211206e-01	ci left: 1.384919e-02	ci right 1.564850e-02	k: 1031	n:70000
WHSC1   70000 perm   21 sec   (3329 perm/sec)   p_kst 1.472857e-02   p_cons 8.689857e-01   p_joint 4.131429e-02

Joint ci ratio: 6.994790e-02	ci left: 3.645212e-02	ci right 3.910653e-02	k: 3021	n:80000
Cons ci ratio: 5.367272e-03	ci left: 8.672343e-01	ci right 8.719139e-01	k: 69567	n:80000
KS ci ratio: 1.138098e-01	ci left: 1.378023e-02	ci right 1.545525e-02	k: 1168	n:80000
WHSC1   80000 perm   24 sec   (3287 perm/sec)   p_kst 1.460000e-02   p_cons 8.695875e-01   p_joint 3.776250e-02

Joint ci ratio: 6.843086e-02	ci left: 3.397269e-02	ci right 3.639072e-02	k: 3165	n:90000
Cons ci ratio: 5.042655e-03	ci left: 8.681659e-01	ci right 8.725658e-01	k: 78334	n:90000
KS ci ratio: 1.070586e-01	ci left: 1.389140e-02	ci right 1.547345e-02	k: 1320	n:90000
WHSC1   90000 perm   28 sec   (3244 perm/sec)   p_kst 1.466667e-02   p_cons 8.703778e-01   p_joint 3.516667e-02

Joint ci ratio: 6.769905e-02	ci left: 3.134068e-02	ci right 3.354655e-02	k: 3243	n:100000
Cons ci ratio: 4.790184e-03	ci left: 8.679804e-01	ci right 8.721581e-01	k: 87008	n:100000
KS ci ratio: 1.011729e-01	ci left: 1.404118e-02	ci right 1.554715e-02	k: 1478	n:100000
WHSC1   100000 perm   31 sec   (3197 perm/sec)   p_kst 1.478000e-02   p_cons 8.700800e-01   p_joint 3.243000e-02

Joint ci ratio: 6.670827e-02	ci left: 2.942010e-02	ci right 3.145930e-02	k: 3347	n:110000
Cons ci ratio: 4.576945e-03	ci left: 8.675957e-01	ci right 8.715848e-01	k: 95656	n:110000
KS ci ratio: 9.607279e-02	ci left: 1.419231e-02	ci right 1.563343e-02	k: 1639	n:110000
WHSC1   110000 perm   35 sec   (3154 perm/sec)   p_kst 1.490000e-02   p_cons 8.696000e-01   p_joint 3.042727e-02

Outputting figure to mutsig2_images.part000000000191/WHSC1.7_4258_110000_0.0149_0.8696_0.030427.png
                gene_name: WHSC1
               theta_stop: 0.096 
                    nperm: 110000 
                     p_ks: 0.015 
        ci_ks_bounds_left: 0.014 
       ci_ks_bounds_right: 0.016 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 15 percent done.
WSCD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.719346e-02	ci left: 1.330589e-01	ci right 1.467516e-01	k: 1398	n:10000
Cons ci ratio: 1.367749e-01	ci left: 7.068651e-02	ci right 8.116213e-02	k: 758	n:10000
KS ci ratio: 6.954595e-02	ci left: 2.326438e-01	ci right 2.495073e-01	k: 2410	n:10000
WSCD1   10000 perm   2 sec   (4931 perm/sec)   p_kst 2.410000e-01   p_cons 7.580000e-02   p_joint 1.398000e-01

Joint ci ratio: 7.143713e-02	ci left: 1.261559e-01	ci right 1.355517e-01	k: 2616	n:20000
Cons ci ratio: 9.765953e-02	ci left: 7.089790e-02	ci right 7.822636e-02	k: 1490	n:20000
KS ci ratio: 4.913658e-02	ci left: 2.354326e-01	ci right 2.473427e-01	k: 4827	n:20000
WSCD1   20000 perm   5 sec   (4403 perm/sec)   p_kst 2.413500e-01   p_cons 7.450000e-02   p_joint 1.308000e-01

Outputting figure to mutsig2_images.part000000000191/WSCD1.7_1760_20000_0.24135_0.0745_0.1308.png
                gene_name: WSCD1
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.074 
      ci_cons_bounds_left: 0.071 
     ci_cons_bounds_right: 0.078 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 17 percent done.
WWC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.545109e-02	ci left: 2.552813e-01	ci right 2.726564e-01	k: 2639	n:10000
Cons ci ratio: 9.487959e-02	ci left: 1.388391e-01	ci right 1.527680e-01	k: 1457	n:10000
KS ci ratio: 3.973867e-02	ci left: 4.832543e-01	ci right 5.029497e-01	k: 4931	n:10000
WWC3   10000 perm   2 sec   (4694 perm/sec)   p_kst 4.931000e-01   p_cons 1.457000e-01   p_joint 2.639000e-01

Outputting figure to mutsig2_images.part000000000191/WWC3.7_3367_10000_0.4931_0.1457_0.2639.png
                gene_name: WWC3
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 19 percent done.
WIPF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.846994e-02	ci left: 1.567914e-01	ci right 1.714049e-01	k: 1640	n:10000
Cons ci ratio: 1.865137e-01	ci left: 3.834345e-02	ci right 4.632594e-02	k: 422	n:10000
KS ci ratio: 2.610772e-02	ci left: 6.835521e-01	ci right 7.017356e-01	k: 6927	n:10000
WIPF1   10000 perm   2 sec   (5335 perm/sec)   p_kst 6.927000e-01   p_cons 4.220000e-02   p_joint 1.640000e-01

Joint ci ratio: 7.170532e-02	ci left: 1.253190e-01	ci right 1.346889e-01	k: 2599	n:20000
Cons ci ratio: 1.330417e-01	ci left: 3.882614e-02	ci right 4.440812e-02	k: 831	n:20000
KS ci ratio: 1.770381e-02	ci left: 7.039077e-01	ci right 7.165312e-01	k: 14205	n:20000
WIPF1   20000 perm   4 sec   (4879 perm/sec)   p_kst 7.102500e-01   p_cons 4.155000e-02   p_joint 1.299500e-01

Joint ci ratio: 5.016765e-02	ci left: 1.648409e-01	ci right 1.733566e-01	k: 5072	n:30000
Cons ci ratio: 1.098750e-01	ci left: 3.845951e-02	ci right 4.296332e-02	k: 1220	n:30000
KS ci ratio: 1.504558e-02	ci left: 6.882477e-01	ci right 6.987148e-01	k: 20805	n:30000
WIPF1   30000 perm   6 sec   (4746 perm/sec)   p_kst 6.935000e-01   p_cons 4.066667e-02   p_joint 1.690667e-01

Joint ci ratio: 4.795716e-02	ci left: 1.396818e-01	ci right 1.465701e-01	k: 5724	n:40000
Cons ci ratio: 9.530756e-02	ci left: 3.863795e-02	ci right 4.252911e-02	k: 1622	n:40000
KS ci ratio: 1.304218e-02	ci left: 6.885539e-01	ci right 6.976181e-01	k: 27724	n:40000
WIPF1   40000 perm   9 sec   (4419 perm/sec)   p_kst 6.931000e-01   p_cons 4.055000e-02   p_joint 1.431000e-01

Outputting figure to mutsig2_images.part000000000191/WIPF1.6_1540_40000_0.6931_0.04055_0.1431.png
                gene_name: WIPF1
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.041 
      ci_cons_bounds_left: 0.039 
     ci_cons_bounds_right: 0.043 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 21 percent done.
WT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.240382e-01	ci left: 8.514113e-02	ci right 9.649855e-02	k: 907	n:10000
Cons ci ratio: 1.396839e-01	ci left: 6.787957e-02	ci right 7.817082e-02	k: 729	n:10000
KS ci ratio: 1.070647e-01	ci left: 1.118366e-01	ci right 1.245868e-01	k: 1181	n:10000
WT1   10000 perm   2 sec   (5211 perm/sec)   p_kst 1.181000e-01   p_cons 7.290000e-02   p_joint 9.070000e-02

Joint ci ratio: 1.254441e-01	ci left: 4.362287e-02	ci right 4.950986e-02	k: 930	n:20000
Cons ci ratio: 9.773037e-02	ci left: 7.080016e-02	ci right 7.812413e-02	k: 1488	n:20000
KS ci ratio: 7.794982e-02	ci left: 1.078575e-01	ci right 1.166556e-01	k: 2244	n:20000
WT1   20000 perm   4 sec   (4773 perm/sec)   p_kst 1.122000e-01   p_cons 7.440000e-02   p_joint 4.650000e-02

Joint ci ratio: 8.479409e-02	ci left: 6.367335e-02	ci right 6.934429e-02	k: 1994	n:30000
Cons ci ratio: 8.454467e-02	ci left: 6.403277e-02	ci right 6.971813e-02	k: 2005	n:30000
KS ci ratio: 6.373680e-02	ci left: 1.083867e-01	ci right 1.155554e-01	k: 3358	n:30000
WT1   30000 perm   7 sec   (4486 perm/sec)   p_kst 1.119333e-01   p_cons 6.683333e-02   p_joint 6.646667e-02

Outputting figure to mutsig2_images.part000000000191/WT1.6_1594_30000_0.11193_0.066833_0.066467.png
                gene_name: WT1
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.069 

Current progress: 23 percent done.
WWC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.124280e-02	ci left: 7.646610e-01	ci right 7.811797e-01	k: 7730	n:10000
Cons ci ratio: 2.072783e-02	ci left: 7.732695e-01	ci right 7.895662e-01	k: 7815	n:10000
KS ci ratio: 3.701324e-02	ci left: 5.187591e-01	ci right 5.384242e-01	k: 5286	n:10000
WWC1   10000 perm   3 sec   (3952 perm/sec)   p_kst 5.286000e-01   p_cons 7.815000e-01   p_joint 7.730000e-01

Outputting figure to mutsig2_images.part000000000191/WWC1.6_3452_10000_0.5286_0.7815_0.773.png
                gene_name: WWC1
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 25 percent done.
WDR93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.561004e-02	ci left: 1.369772e-01	ci right 1.508309e-01	k: 1438	n:10000
Cons ci ratio: 5.266631e-02	ci left: 3.470060e-01	ci right 3.658777e-01	k: 3564	n:10000
KS ci ratio: 9.484152e-02	ci left: 1.389371e-01	ci right 1.528699e-01	k: 1458	n:10000
WDR93   10000 perm   2 sec   (5310 perm/sec)   p_kst 1.458000e-01   p_cons 3.564000e-01   p_joint 1.438000e-01

Outputting figure to mutsig2_images.part000000000191/WDR93.5_2125_10000_0.1458_0.3564_0.1438.png
                gene_name: WDR93
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 26 percent done.
WWOX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.683359e-02	ci left: 6.716624e-01	ci right 6.900322e-01	k: 6809	n:10000
Cons ci ratio: 1.472414e-02	ci left: 8.697895e-01	ci right 8.827904e-01	k: 8764	n:10000
KS ci ratio: 3.169081e-02	ci left: 5.950381e-01	ci right 6.143009e-01	k: 6047	n:10000
WWOX   10000 perm   2 sec   (4475 perm/sec)   p_kst 6.047000e-01   p_cons 8.764000e-01   p_joint 6.809000e-01

Outputting figure to mutsig2_images.part000000000191/WWOX.5_1343_10000_0.6047_0.8764_0.6809.png
                gene_name: WWOX
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 28 percent done.
WDTC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.896790e-02	ci left: 8.024758e-01	ci right 8.179431e-01	k: 8103	n:10000
Cons ci ratio: 1.717362e-02	ci left: 8.316480e-01	ci right 8.461540e-01	k: 8390	n:10000
KS ci ratio: 2.750894e-02	ci left: 6.606855e-01	ci right 6.792154e-01	k: 6700	n:10000
WDTC1   10000 perm   2 sec   (5125 perm/sec)   p_kst 6.700000e-01   p_cons 8.390000e-01   p_joint 8.103000e-01

Outputting figure to mutsig2_images.part000000000191/WDTC1.4_2091_10000_0.67_0.839_0.8103.png
                gene_name: WDTC1
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 30 percent done.
WHAMM
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.144643e-01	ci left: 1.289402e-02	ci right 1.779424e-02	k: 152	n:10000
Cons ci ratio: 6.109146e-01	ci left: 2.859150e-03	ci right 5.442922e-03	k: 40	n:10000
KS ci ratio: 9.476548e-02	ci left: 1.391331e-01	ci right 1.530738e-01	k: 1460	n:10000
WHAMM   10000 perm   2 sec   (4810 perm/sec)   p_kst 1.460000e-01   p_cons 4.000000e-03   p_joint 1.520000e-02

Joint ci ratio: 3.523572e-01	ci left: 5.068179e-03	ci right 7.279094e-03	k: 122	n:20000
Cons ci ratio: 4.319925e-01	ci left: 3.217547e-03	ci right 5.031303e-03	k: 81	n:20000
KS ci ratio: 6.603416e-02	ci left: 1.448309e-01	ci right 1.547711e-01	k: 2995	n:20000
WHAMM   20000 perm   5 sec   (4433 perm/sec)   p_kst 1.497500e-01   p_cons 4.050000e-03   p_joint 6.100000e-03

Joint ci ratio: 3.043262e-01	ci left: 4.663813e-03	ci right 6.367437e-03	k: 164	n:30000
Cons ci ratio: 3.378737e-01	ci left: 3.713216e-03	ci right 5.251843e-03	k: 133	n:30000
KS ci ratio: 5.386059e-02	ci left: 1.460098e-01	ci right 1.541248e-01	k: 4501	n:30000
WHAMM   30000 perm   7 sec   (4220 perm/sec)   p_kst 1.500333e-01   p_cons 4.433333e-03   p_joint 5.466667e-03

Joint ci ratio: 2.053802e-01	ci left: 8.097782e-03	ci right 9.974535e-03	k: 360	n:40000
Cons ci ratio: 2.875333e-01	ci left: 3.960551e-03	ci right 5.312912e-03	k: 184	n:40000
KS ci ratio: 4.650205e-02	ci left: 1.473308e-01	ci right 1.543700e-01	k: 6033	n:40000
WHAMM   40000 perm   10 sec   (3968 perm/sec)   p_kst 1.508250e-01   p_cons 4.600000e-03   p_joint 9.000000e-03

Joint ci ratio: 2.106219e-01	ci left: 6.155261e-03	ci right 7.622868e-03	k: 343	n:50000
Cons ci ratio: 2.607421e-01	ci left: 3.913558e-03	ci right 5.105096e-03	k: 224	n:50000
KS ci ratio: 4.157816e-02	ci left: 1.477926e-01	ci right 1.540879e-01	k: 7546	n:50000
WHAMM   50000 perm   13 sec   (3946 perm/sec)   p_kst 1.509200e-01   p_cons 4.480000e-03   p_joint 6.860000e-03

Joint ci ratio: 2.148658e-01	ci left: 4.923914e-03	ci right 6.124677e-03	k: 330	n:60000
Cons ci ratio: 2.416471e-01	ci left: 3.839174e-03	ci right 4.909639e-03	k: 261	n:60000
KS ci ratio: 3.796887e-02	ci left: 1.479783e-01	ci right 1.537222e-01	k: 9050	n:60000
WHAMM   60000 perm   15 sec   (3917 perm/sec)   p_kst 1.508333e-01   p_cons 4.350000e-03   p_joint 5.500000e-03

Joint ci ratio: 2.139790e-01	ci left: 4.260893e-03	ci right 5.295101e-03	k: 333	n:70000
Cons ci ratio: 2.265940e-01	ci left: 3.774852e-03	ci right 4.752658e-03	k: 297	n:70000
KS ci ratio: 3.515727e-02	ci left: 1.481564e-01	ci right 1.534726e-01	k: 10556	n:70000
WHAMM   70000 perm   18 sec   (3880 perm/sec)   p_kst 1.508000e-01   p_cons 4.242857e-03   p_joint 4.757143e-03

Joint ci ratio: 2.137223e-01	ci left: 3.740001e-03	ci right 4.646536e-03	k: 334	n:80000
Cons ci ratio: 2.266548e-01	ci left: 3.302901e-03	ci right 4.158709e-03	k: 297	n:80000
KS ci ratio: 3.284520e-02	ci left: 1.486495e-01	ci right 1.536258e-01	k: 12090	n:80000
WHAMM   80000 perm   21 sec   (3788 perm/sec)   p_kst 1.511250e-01   p_cons 3.712500e-03   p_joint 4.175000e-03

Joint ci ratio: 2.053302e-01	ci left: 3.619213e-03	ci right 4.457696e-03	k: 362	n:90000
Cons ci ratio: 2.106397e-01	ci left: 3.429593e-03	ci right 4.247343e-03	k: 344	n:90000
KS ci ratio: 3.104393e-02	ci left: 1.481587e-01	ci right 1.528417e-01	k: 13544	n:90000
WHAMM   90000 perm   24 sec   (3747 perm/sec)   p_kst 1.504889e-01   p_cons 3.822222e-03   p_joint 4.022222e-03

Joint ci ratio: 2.053719e-01	ci left: 3.257227e-03	ci right 4.012014e-03	k: 362	n:100000
Cons ci ratio: 2.001802e-01	ci left: 3.437613e-03	ci right 4.211605e-03	k: 381	n:100000
KS ci ratio: 2.945317e-02	ci left: 1.482592e-01	ci right 1.527011e-01	k: 15047	n:100000
WHAMM   100000 perm   27 sec   (3700 perm/sec)   p_kst 1.504700e-01   p_cons 3.810000e-03   p_joint 3.620000e-03

Joint ci ratio: 2.241461e-01	ci left: 2.462030e-03	ci right 3.091913e-03	k: 304	n:110000
Cons ci ratio: 1.904554e-01	ci left: 3.470970e-03	ci right 4.210114e-03	k: 421	n:110000
KS ci ratio: 2.804243e-02	ci left: 1.487261e-01	ci right 1.529651e-01	k: 16592	n:110000
WHAMM   110000 perm   30 sec   (3656 perm/sec)   p_kst 1.508364e-01   p_cons 3.827273e-03   p_joint 2.763636e-03

Joint ci ratio: 1.622342e-01	ci left: 4.448773e-03	ci right 5.242114e-03	k: 580	n:120000
Cons ci ratio: 1.824195e-01	ci left: 3.483617e-03	ci right 4.190694e-03	k: 459	n:120000
KS ci ratio: 2.683241e-02	ci left: 1.489702e-01	ci right 1.530300e-01	k: 18119	n:120000
WHAMM   120000 perm   33 sec   (3607 perm/sec)   p_kst 1.509917e-01   p_cons 3.825000e-03   p_joint 4.833333e-03

Joint ci ratio: 1.604711e-01	ci left: 4.202478e-03	ci right 4.942965e-03	k: 593	n:130000
Cons ci ratio: 1.762122e-01	ci left: 3.458096e-03	ci right 4.133565e-03	k: 492	n:130000
KS ci ratio: 2.576661e-02	ci left: 1.491800e-01	ci right 1.530817e-01	k: 19646	n:130000
WHAMM   130000 perm   37 sec   (3551 perm/sec)   p_kst 1.511231e-01   p_cons 3.784615e-03   p_joint 4.561538e-03

Joint ci ratio: 1.657644e-01	ci left: 3.648713e-03	ci right 4.314946e-03	k: 556	n:140000
Cons ci ratio: 1.696297e-01	ci left: 3.477610e-03	ci right 4.128921e-03	k: 531	n:140000
KS ci ratio: 2.481780e-02	ci left: 1.493697e-01	ci right 1.531304e-01	k: 21174	n:140000
WHAMM   140000 perm   40 sec   (3487 perm/sec)   p_kst 1.512429e-01   p_cons 3.792857e-03   p_joint 3.971429e-03

Joint ci ratio: 1.633037e-01	ci left: 3.514112e-03	ci right 4.145305e-03	k: 573	n:150000
Cons ci ratio: 1.624536e-01	ci left: 3.552487e-03	ci right 4.186927e-03	k: 579	n:150000
KS ci ratio: 2.393868e-02	ci left: 1.498350e-01	ci right 1.534719e-01	k: 22747	n:150000
WHAMM   150000 perm   44 sec   (3435 perm/sec)   p_kst 1.516467e-01   p_cons 3.860000e-03   p_joint 3.820000e-03

Joint ci ratio: 1.429935e-01	ci left: 4.340607e-03	ci right 5.015035e-03	k: 747	n:160000
Cons ci ratio: 1.575082e-01	ci left: 3.552450e-03	ci right 4.165744e-03	k: 616	n:160000
KS ci ratio: 2.316870e-02	ci left: 1.500014e-01	ci right 1.535237e-01	k: 24281	n:160000
WHAMM   160000 perm   47 sec   (3389 perm/sec)   p_kst 1.517563e-01   p_cons 3.850000e-03   p_joint 4.668750e-03

Joint ci ratio: 1.418747e-01	ci left: 4.153321e-03	ci right 4.793171e-03	k: 759	n:170000
Cons ci ratio: 1.526375e-01	ci left: 3.569649e-03	ci right 4.165114e-03	k: 656	n:170000
KS ci ratio: 2.248343e-02	ci left: 1.499802e-01	ci right 1.533964e-01	k: 25786	n:170000
WHAMM   170000 perm   51 sec   (3343 perm/sec)   p_kst 1.516824e-01   p_cons 3.858824e-03   p_joint 4.464706e-03

Joint ci ratio: 1.383711e-01	ci left: 4.131649e-03	ci right 4.751145e-03	k: 798	n:180000
Cons ci ratio: 1.405978e-01	ci left: 3.997587e-03	ci right 4.607436e-03	k: 773	n:180000
KS ci ratio: 2.186644e-02	ci left: 1.498355e-01	ci right 1.531535e-01	k: 27268	n:180000
WHAMM   180000 perm   55 sec   (3300 perm/sec)   p_kst 1.514889e-01   p_cons 4.294444e-03   p_joint 4.433333e-03

Joint ci ratio: 1.356033e-01	ci left: 4.081918e-03	ci right 4.680727e-03	k: 831	n:190000
Cons ci ratio: 1.379546e-01	ci left: 3.939573e-03	ci right 4.528343e-03	k: 803	n:190000
KS ci ratio: 2.128016e-02	ci left: 1.499168e-01	ci right 1.531465e-01	k: 28790	n:190000
WHAMM   190000 perm   58 sec   (3255 perm/sec)   p_kst 1.515263e-01   p_cons 4.226316e-03   p_joint 4.373684e-03

Joint ci ratio: 1.336171e-01	ci left: 3.998601e-03	ci right 4.575912e-03	k: 856	n:200000
Cons ci ratio: 1.341685e-01	ci left: 3.964769e-03	ci right 4.539746e-03	k: 849	n:200000
KS ci ratio: 2.076327e-02	ci left: 1.496873e-01	ci right 1.528328e-01	k: 30251	n:200000
WHAMM   200000 perm   62 sec   (3211 perm/sec)   p_kst 1.512550e-01   p_cons 4.245000e-03   p_joint 4.280000e-03

Joint ci ratio: 1.306780e-01	ci left: 3.987765e-03	ci right 4.549864e-03	k: 895	n:210000
Cons ci ratio: 1.314166e-01	ci left: 3.941701e-03	ci right 4.500692e-03	k: 885	n:210000
KS ci ratio: 2.024283e-02	ci left: 1.499785e-01	ci right 1.530502e-01	k: 31817	n:210000
WHAMM   210000 perm   67 sec   (3157 perm/sec)   p_kst 1.515095e-01   p_cons 4.214286e-03   p_joint 4.261905e-03

Joint ci ratio: 1.122417e-01	ci left: 5.204050e-03	ci right 5.827269e-03	k: 1212	n:220000
Cons ci ratio: 1.275826e-01	ci left: 4.000044e-03	ci right 4.549507e-03	k: 939	n:220000
KS ci ratio: 1.977467e-02	ci left: 1.500494e-01	ci right 1.530507e-01	k: 33340	n:220000
WHAMM   220000 perm   71 sec   (3100 perm/sec)   p_kst 1.515455e-01   p_cons 4.268182e-03   p_joint 5.509091e-03

Joint ci ratio: 1.130544e-01	ci left: 4.905914e-03	ci right 5.497966e-03	k: 1195	n:230000
Cons ci ratio: 1.245067e-01	ci left: 4.024037e-03	ci right 4.562486e-03	k: 986	n:230000
KS ci ratio: 1.934835e-02	ci left: 1.499720e-01	ci right 1.529064e-01	k: 34830	n:230000
WHAMM   230000 perm   75 sec   (3061 perm/sec)   p_kst 1.514348e-01   p_cons 4.286957e-03   p_joint 5.195652e-03

Joint ci ratio: 1.111225e-01	ci left: 4.871589e-03	ci right 5.448794e-03	k: 1237	n:240000
Cons ci ratio: 1.217022e-01	ci left: 4.042135e-03	ci right 4.569946e-03	k: 1032	n:240000
KS ci ratio: 1.893557e-02	ci left: 1.500760e-01	ci right 1.529491e-01	k: 36362	n:240000
WHAMM   240000 perm   79 sec   (3023 perm/sec)   p_kst 1.515083e-01   p_cons 4.300000e-03   p_joint 5.154167e-03

Joint ci ratio: 1.162972e-01	ci left: 4.260814e-03	ci right 4.790774e-03	k: 1130	n:250000
Cons ci ratio: 1.194689e-01	ci left: 4.031743e-03	ci right 4.547853e-03	k: 1071	n:250000
KS ci ratio: 1.856198e-02	ci left: 1.499811e-01	ci right 1.527950e-01	k: 37846	n:250000
WHAMM   250000 perm   84 sec   (2985 perm/sec)   p_kst 1.513840e-01   p_cons 4.284000e-03   p_joint 4.520000e-03

Joint ci ratio: 1.173011e-01	ci left: 4.025966e-03	ci right 4.531337e-03	k: 1111	n:260000
Cons ci ratio: 1.169846e-01	ci left: 4.048369e-03	ci right 4.555086e-03	k: 1117	n:260000
KS ci ratio: 1.819142e-02	ci left: 1.501506e-01	ci right 1.529110e-01	k: 39397	n:260000
WHAMM   260000 perm   88 sec   (2949 perm/sec)   p_kst 1.515269e-01   p_cons 4.296154e-03   p_joint 4.273077e-03

Joint ci ratio: 1.156005e-01	ci left: 3.995514e-03	ci right 4.489295e-03	k: 1144	n:270000
Cons ci ratio: 1.149470e-01	ci left: 4.042280e-03	ci right 4.538824e-03	k: 1157	n:270000
KS ci ratio: 1.785787e-02	ci left: 1.500831e-01	ci right 1.527911e-01	k: 40887	n:270000
WHAMM   270000 perm   93 sec   (2913 perm/sec)   p_kst 1.514333e-01   p_cons 4.285185e-03   p_joint 4.237037e-03

Joint ci ratio: 1.143133e-01	ci left: 3.942998e-03	ci right 4.424496e-03	k: 1170	n:280000
Cons ci ratio: 1.132023e-01	ci left: 4.022813e-03	ci right 4.508965e-03	k: 1193	n:280000
KS ci ratio: 1.752789e-02	ci left: 1.502272e-01	ci right 1.528872e-01	k: 42435	n:280000
WHAMM   280000 perm   97 sec   (2876 perm/sec)   p_kst 1.515536e-01   p_cons 4.260714e-03   p_joint 4.178571e-03

Joint ci ratio: 1.120389e-01	ci left: 3.967867e-03	ci right 4.442125e-03	k: 1218	n:290000
Cons ci ratio: 1.112173e-01	ci left: 4.028210e-03	ci right 4.505918e-03	k: 1236	n:290000
KS ci ratio: 1.722040e-02	ci left: 1.502896e-01	ci right 1.529035e-01	k: 43962	n:290000
WHAMM   290000 perm   103 sec   (2822 perm/sec)   p_kst 1.515931e-01   p_cons 4.262069e-03   p_joint 4.200000e-03

Joint ci ratio: 1.126515e-01	ci left: 3.793470e-03	ci right 4.249526e-03	k: 1205	n:300000
Cons ci ratio: 1.096346e-01	ci left: 4.010620e-03	ci right 4.479036e-03	k: 1272	n:300000
KS ci ratio: 1.693293e-02	ci left: 1.502818e-01	ci right 1.528516e-01	k: 45469	n:300000
WHAMM   300000 perm   108 sec   (2784 perm/sec)   p_kst 1.515633e-01   p_cons 4.240000e-03   p_joint 4.016667e-03

Joint ci ratio: 1.110975e-01	ci left: 3.777707e-03	ci right 4.225192e-03	k: 1239	n:310000
Cons ci ratio: 1.072976e-01	ci left: 4.056995e-03	ci right 4.520089e-03	k: 1328	n:310000
KS ci ratio: 1.665876e-02	ci left: 1.502845e-01	ci right 1.528123e-01	k: 46979	n:310000
WHAMM   310000 perm   113 sec   (2734 perm/sec)   p_kst 1.515452e-01   p_cons 4.283871e-03   p_joint 3.996774e-03

Joint ci ratio: 1.107910e-01	ci left: 3.680911e-03	ci right 4.115649e-03	k: 1246	n:320000
Cons ci ratio: 1.054870e-01	ci left: 4.070140e-03	ci right 4.526409e-03	k: 1374	n:320000
KS ci ratio: 1.641026e-02	ci left: 1.500881e-01	ci right 1.525745e-01	k: 48425	n:320000
WHAMM   320000 perm   119 sec   (2694 perm/sec)   p_kst 1.513281e-01   p_cons 4.293750e-03   p_joint 3.893750e-03

Joint ci ratio: 1.103983e-01	ci left: 3.595878e-03	ci right 4.018969e-03	k: 1255	n:330000
Cons ci ratio: 1.036187e-01	ci left: 4.094358e-03	ci right 4.544718e-03	k: 1424	n:330000
KS ci ratio: 1.616549e-02	ci left: 1.500155e-01	ci right 1.524633e-01	k: 49908	n:330000
WHAMM   330000 perm   124 sec   (2657 perm/sec)   p_kst 1.512364e-01   p_cons 4.315152e-03   p_joint 3.803030e-03

Joint ci ratio: 1.127722e-01	ci left: 3.341419e-03	ci right 3.743586e-03	k: 1203	n:340000
Cons ci ratio: 1.019157e-01	ci left: 4.111485e-03	ci right 4.555851e-03	k: 1472	n:340000
KS ci ratio: 1.592314e-02	ci left: 1.500794e-01	ci right 1.524912e-01	k: 51436	n:340000
WHAMM   340000 perm   130 sec   (2623 perm/sec)   p_kst 1.512824e-01   p_cons 4.329412e-03   p_joint 3.538235e-03

Joint ci ratio: 1.143124e-01	ci left: 3.157101e-03	ci right 3.542623e-03	k: 1171	n:350000
Cons ci ratio: 1.002609e-01	ci left: 4.130477e-03	ci right 4.569220e-03	k: 1521	n:350000
KS ci ratio: 1.569591e-02	ci left: 1.500659e-01	ci right 1.524428e-01	k: 52938	n:350000
WHAMM   350000 perm   135 sec   (2585 perm/sec)   p_kst 1.512514e-01   p_cons 4.345714e-03   p_joint 3.345714e-03

Joint ci ratio: 9.717367e-02	ci left: 4.281260e-03	ci right 4.721219e-03	k: 1619	n:360000
Cons ci ratio: 9.881064e-02	ci left: 4.137630e-03	ci right 4.570407e-03	k: 1566	n:360000
KS ci ratio: 1.548585e-02	ci left: 1.499260e-01	ci right 1.522685e-01	k: 54394	n:360000
WHAMM   360000 perm   141 sec   (2548 perm/sec)   p_kst 1.510944e-01   p_cons 4.350000e-03   p_joint 4.497222e-03

Outputting figure to mutsig2_images.part000000000191/WHAMM.4_2470_360000_0.15109_0.00435_0.0044972.png
                gene_name: WHAMM
               theta_stop: 0.099 
                    nperm: 360000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.0043 
      ci_cons_bounds_left: 0.0041 
     ci_cons_bounds_right: 0.0046 
                  p_joint: 0.0045 
     ci_joint_bounds_left: 0.0043 
    ci_joint_bounds_right: 0.0047 

Current progress: 32 percent done.
WHSC1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.220959e-02	ci left: 4.531890e-01	ci right 4.728325e-01	k: 4630	n:10000
Cons ci ratio: 5.025312e-02	ci left: 3.686820e-01	ci right 3.877890e-01	k: 3782	n:10000
KS ci ratio: 4.723945e-02	ci left: 3.980467e-01	ci right 4.174071e-01	k: 4077	n:10000
WHSC1L1   10000 perm   2 sec   (4548 perm/sec)   p_kst 4.077000e-01   p_cons 3.782000e-01   p_joint 4.630000e-01

Outputting figure to mutsig2_images.part000000000191/WHSC1L1.4_4493_10000_0.4077_0.3782_0.463.png
                gene_name: WHSC1L1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 34 percent done.
WHSC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.452325e-01	ci left: 6.294902e-02	ci right 7.290448e-02	k: 678	n:10000
Cons ci ratio: 4.719059e-02	ci left: 3.985447e-01	ci right 4.179088e-01	k: 4082	n:10000
KS ci ratio: 2.452959e-01	ci left: 2.184098e-02	ci right 2.803999e-02	k: 248	n:10000
WHSC2   10000 perm   2 sec   (5589 perm/sec)   p_kst 2.480000e-02   p_cons 4.082000e-01   p_joint 6.780000e-02

Joint ci ratio: 1.357897e-01	ci left: 3.727788e-02	ci right 4.275688e-02	k: 799	n:20000
Cons ci ratio: 3.312455e-02	ci left: 4.049674e-01	ci right 4.186583e-01	k: 8236	n:20000
KS ci ratio: 1.777090e-01	ci left: 2.163632e-02	ci right 2.590368e-02	k: 474	n:20000
WHSC2   20000 perm   4 sec   (4915 perm/sec)   p_kst 2.370000e-02   p_cons 4.118000e-01   p_joint 3.995000e-02

Joint ci ratio: 9.793022e-02	ci left: 4.821186e-02	ci right 5.320894e-02	k: 1520	n:30000
Cons ci ratio: 2.705436e-02	ci left: 4.060898e-01	ci right 4.172606e-01	k: 12350	n:30000
KS ci ratio: 1.421147e-01	ci left: 2.297315e-02	ci right 2.651970e-02	k: 741	n:30000
WHSC2   30000 perm   6 sec   (4661 perm/sec)   p_kst 2.470000e-02   p_cons 4.116667e-01   p_joint 5.066667e-02

Joint ci ratio: 7.448955e-02	ci left: 6.233301e-02	ci right 6.718041e-02	k: 2589	n:40000
Cons ci ratio: 2.338746e-02	ci left: 4.077196e-01	ci right 4.173931e-01	k: 16502	n:40000
KS ci ratio: 1.218393e-01	ci left: 2.368610e-02	ci right 2.678335e-02	k: 1008	n:40000
WHSC2   40000 perm   9 sec   (4490 perm/sec)   p_kst 2.520000e-02   p_cons 4.125500e-01   p_joint 6.472500e-02

Joint ci ratio: 6.375161e-02	ci left: 6.805444e-02	ci right 7.255560e-02	k: 3514	n:50000
Cons ci ratio: 2.091124e-02	ci left: 4.083998e-01	ci right 4.170503e-01	k: 20636	n:50000
KS ci ratio: 1.094786e-01	ci left: 2.362969e-02	ci right 2.638583e-02	k: 1249	n:50000
WHSC2   50000 perm   12 sec   (4325 perm/sec)   p_kst 2.498000e-02   p_cons 4.127200e-01   p_joint 7.028000e-02

Joint ci ratio: 6.945231e-02	ci left: 4.866296e-02	ci right 5.218069e-02	k: 3024	n:60000
Cons ci ratio: 1.919822e-02	ci left: 4.060274e-01	ci right 4.139146e-01	k: 24598	n:60000
KS ci ratio: 1.000769e-01	ci left: 2.368415e-02	ci right 2.619543e-02	k: 1495	n:60000
WHSC2   60000 perm   14 sec   (4206 perm/sec)   p_kst 2.491667e-02   p_cons 4.099667e-01   p_joint 5.040000e-02

Joint ci ratio: 5.587208e-02	ci left: 6.386141e-02	ci right 6.754612e-02	k: 4598	n:70000
Cons ci ratio: 1.777452e-02	ci left: 4.063104e-01	ci right 4.136114e-01	k: 28697	n:70000
KS ci ratio: 9.193557e-02	ci left: 2.414926e-02	ci right 2.649032e-02	k: 1771	n:70000
WHSC2   70000 perm   17 sec   (4154 perm/sec)   p_kst 2.530000e-02   p_cons 4.099571e-01   p_joint 6.568571e-02

Outputting figure to mutsig2_images.part000000000191/WHSC2.4_1664_70000_0.0253_0.40996_0.065686.png
                gene_name: WHSC2
               theta_stop: 0.092 
                    nperm: 70000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.068 

Current progress: 36 percent done.
WIZ
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.654068e-02	ci left: 5.251652e-01	ci right 5.448144e-01	k: 5350	n:10000
Cons ci ratio: 3.284314e-02	ci left: 5.777771e-01	ci right 5.971719e-01	k: 5875	n:10000
KS ci ratio: 5.899237e-02	ci left: 2.971738e-01	ci right 3.153392e-01	k: 3062	n:10000
WIZ   10000 perm   2 sec   (5250 perm/sec)   p_kst 3.062000e-01   p_cons 5.875000e-01   p_joint 5.350000e-01

Outputting figure to mutsig2_images.part000000000191/WIZ.4_2413_10000_0.3062_0.5875_0.535.png
                gene_name: WIZ
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.54 

Current progress: 38 percent done.
WNK2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.974952e-01	ci left: 3.414726e-02	ci right 4.172496e-02	k: 378	n:10000
Cons ci ratio: 6.124631e-02	ci left: 2.816139e-01	ci right 2.995082e-01	k: 2905	n:10000
KS ci ratio: 2.288572e-01	ci left: 2.523219e-02	ci right 3.184628e-02	k: 284	n:10000
WNK2   10000 perm   3 sec   (3726 perm/sec)   p_kst 2.840000e-02   p_cons 2.905000e-01   p_joint 3.780000e-02

Joint ci ratio: 9.470588e-02	ci left: 7.515134e-02	ci right 8.267162e-02	k: 1577	n:20000
Cons ci ratio: 4.269618e-02	ci left: 2.901256e-01	ci right 3.028336e-01	k: 5929	n:20000
KS ci ratio: 1.547106e-01	ci left: 2.868948e-02	ci right 3.354810e-02	k: 621	n:20000
WNK2   20000 perm   6 sec   (3367 perm/sec)   p_kst 3.105000e-02   p_cons 2.964500e-01   p_joint 7.885000e-02

Joint ci ratio: 9.360105e-02	ci left: 5.264230e-02	ci right 5.784425e-02	k: 1656	n:30000
Cons ci ratio: 3.494508e-02	ci left: 2.903071e-01	ci right 3.006658e-01	k: 8864	n:30000
KS ci ratio: 1.271682e-01	ci left: 2.874456e-02	ci right 3.268035e-02	k: 920	n:30000
WNK2   30000 perm   9 sec   (3268 perm/sec)   p_kst 3.066667e-02   p_cons 2.954667e-01   p_joint 5.520000e-02

Joint ci ratio: 7.377636e-02	ci left: 6.348767e-02	ci right 6.837558e-02	k: 2636	n:40000
Cons ci ratio: 3.029973e-02	ci left: 2.905085e-01	ci right 2.994713e-01	k: 11799	n:40000
KS ci ratio: 1.089920e-01	ci left: 2.961518e-02	ci right 3.305331e-02	k: 1252	n:40000
WNK2   40000 perm   13 sec   (3198 perm/sec)   p_kst 3.130000e-02   p_cons 2.949750e-01   p_joint 6.590000e-02

Joint ci ratio: 6.010501e-02	ci left: 7.603871e-02	ci right 8.077038e-02	k: 3919	n:50000
Cons ci ratio: 2.715967e-02	ci left: 2.900884e-01	ci right 2.980956e-01	k: 14704	n:50000
KS ci ratio: 9.701502e-02	ci left: 3.008392e-02	ci right 3.317078e-02	k: 1580	n:50000
WNK2   50000 perm   16 sec   (3141 perm/sec)   p_kst 3.160000e-02   p_cons 2.940800e-01   p_joint 7.838000e-02

Outputting figure to mutsig2_images.part000000000191/WNK2.4_6770_50000_0.0316_0.29408_0.07838.png
                gene_name: WNK2
               theta_stop: 0.097 
                    nperm: 50000 
                     p_ks: 0.032 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.078 
     ci_joint_bounds_left: 0.076 
    ci_joint_bounds_right: 0.081 

Current progress: 40 percent done.
WNT10B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.835091e-02	ci left: 2.389673e-01	ci right 2.559801e-01	k: 2474	n:10000
Cons ci ratio: 9.166397e-02	ci left: 1.474675e-01	ci right 1.617343e-01	k: 1545	n:10000
KS ci ratio: 6.470164e-02	ci left: 2.597333e-01	ci right 2.772017e-01	k: 2684	n:10000
WNT10B   10000 perm   2 sec   (5830 perm/sec)   p_kst 2.684000e-01   p_cons 1.545000e-01   p_joint 2.474000e-01

Outputting figure to mutsig2_images.part000000000191/WNT10B.4_1186_10000_0.2684_0.1545_0.2474.png
                gene_name: WNT10B
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 42 percent done.
WNT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.560606e-02	ci left: 6.918185e-01	ci right 7.098644e-01	k: 7009	n:10000
KS ci ratio: 1.435501e-02	ci left: 8.753109e-01	ci right 8.880658e-01	k: 8818	n:10000
WNT3   10000 perm   2 sec   (5728 perm/sec)   p_kst 8.818000e-01   p_cons 7.009000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WNT3.4_1084_10000_0.8818_0.7009_1.png
                gene_name: WNT3
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.88 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
WWP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.862726e-02	ci left: 2.374850e-01	ci right 2.544633e-01	k: 2459	n:10000
Cons ci ratio: 2.928904e-02	ci left: 6.322118e-01	ci right 6.511057e-01	k: 6417	n:10000
KS ci ratio: 9.446282e-02	ci left: 1.399172e-01	ci right 1.538892e-01	k: 1468	n:10000
WWP2   10000 perm   2 sec   (4756 perm/sec)   p_kst 1.468000e-01   p_cons 6.417000e-01   p_joint 2.459000e-01

Outputting figure to mutsig2_images.part000000000191/WWP2.4_2709_10000_0.1468_0.6417_0.2459.png
                gene_name: WWP2
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 45 percent done.
WDR92
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.518041e-02	ci left: 3.260462e-01	ci right 3.446498e-01	k: 3353	n:10000
Cons ci ratio: 2.871198e-02	ci left: 6.413636e-01	ci right 6.601485e-01	k: 6508	n:10000
KS ci ratio: 6.996660e-02	ci left: 2.304707e-01	ci right 2.472817e-01	k: 2388	n:10000
WDR92   10000 perm   2 sec   (5992 perm/sec)   p_kst 2.388000e-01   p_cons 6.508000e-01   p_joint 3.353000e-01

Outputting figure to mutsig2_images.part000000000191/WDR92.3_1106_10000_0.2388_0.6508_0.3353.png
                gene_name: WDR92
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 47 percent done.
WEE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.893355e-01	ci left: 3.719780e-02	ci right 4.507236e-02	k: 410	n:10000
Cons ci ratio: 8.347854e-01	ci left: 1.300388e-03	ci right 3.208291e-03	k: 21	n:10000
KS ci ratio: 5.492152e-02	ci left: 3.281313e-01	ci right 3.467635e-01	k: 3374	n:10000
WEE1   10000 perm   2 sec   (5614 perm/sec)   p_kst 3.374000e-01   p_cons 2.100000e-03   p_joint 4.100000e-02

Joint ci ratio: 1.181094e-01	ci left: 4.910901e-02	ci right 5.532199e-02	k: 1043	n:20000
Cons ci ratio: 5.592997e-01	ci left: 1.770085e-03	ci right 3.180807e-03	k: 48	n:20000
KS ci ratio: 3.899656e-02	ci left: 3.290550e-01	ci right 3.421928e-01	k: 6712	n:20000
WEE1   20000 perm   4 sec   (5046 perm/sec)   p_kst 3.356000e-01   p_cons 2.400000e-03   p_joint 5.215000e-02

Joint ci ratio: 1.024447e-01	ci left: 4.414462e-02	ci right 4.894369e-02	k: 1395	n:30000
Cons ci ratio: 4.432679e-01	ci left: 2.026088e-03	ci right 3.206864e-03	k: 77	n:30000
KS ci ratio: 3.179896e-02	ci left: 3.308537e-01	ci right 3.415780e-01	k: 10086	n:30000
WEE1   30000 perm   6 sec   (4798 perm/sec)   p_kst 3.362000e-01   p_cons 2.566667e-03   p_joint 4.650000e-02

Joint ci ratio: 6.920702e-02	ci left: 7.167458e-02	ci right 7.683743e-02	k: 2969	n:40000
Cons ci ratio: 3.634302e-01	ci left: 2.374173e-03	ci right 3.450008e-03	k: 115	n:40000
KS ci ratio: 2.741934e-02	ci left: 3.335133e-01	ci right 3.428102e-01	k: 13526	n:40000
WEE1   40000 perm   9 sec   (4619 perm/sec)   p_kst 3.381500e-01   p_cons 2.875000e-03   p_joint 7.422500e-02

Joint ci ratio: 8.010903e-02	ci left: 4.386633e-02	ci right 4.754665e-02	k: 2284	n:50000
Cons ci ratio: 3.308330e-01	ci left: 2.337566e-03	ci right 3.281630e-03	k: 139	n:50000
KS ci ratio: 2.454297e-02	ci left: 3.336739e-01	ci right 3.419850e-01	k: 16891	n:50000
WEE1   50000 perm   11 sec   (4508 perm/sec)   p_kst 3.378200e-01   p_cons 2.780000e-03   p_joint 4.568000e-02

Joint ci ratio: 8.517183e-02	ci left: 3.264575e-02	ci right 3.556621e-02	k: 2045	n:60000
Cons ci ratio: 3.094872e-01	ci left: 2.254530e-03	ci right 3.094726e-03	k: 159	n:60000
KS ci ratio: 2.252393e-02	ci left: 3.316718e-01	ci right 3.392441e-01	k: 20127	n:60000
WEE1   60000 perm   14 sec   (4403 perm/sec)   p_kst 3.354500e-01   p_cons 2.650000e-03   p_joint 3.408333e-02

Joint ci ratio: 6.446569e-02	ci left: 4.855174e-02	ci right 5.179996e-02	k: 3511	n:70000
Cons ci ratio: 2.886041e-01	ci left: 2.249617e-03	ci right 3.021104e-03	k: 183	n:70000
KS ci ratio: 2.080554e-02	ci left: 3.329708e-01	ci right 3.399856e-01	k: 23553	n:70000
WEE1   70000 perm   16 sec   (4306 perm/sec)   p_kst 3.364714e-01   p_cons 2.614286e-03   p_joint 5.015714e-02

Joint ci ratio: 6.423943e-02	ci left: 4.304448e-02	ci right 4.591368e-02	k: 3557	n:80000
Cons ci ratio: 2.714478e-01	ci left: 2.247366e-03	ci right 2.964464e-03	k: 207	n:80000
KS ci ratio: 1.947098e-02	ci left: 3.329885e-01	ci right 3.395484e-01	k: 26901	n:80000
WEE1   80000 perm   19 sec   (4219 perm/sec)   p_kst 3.362625e-01   p_cons 2.587500e-03   p_joint 4.446250e-02

Joint ci ratio: 5.905839e-02	ci left: 4.528677e-02	ci right 4.805365e-02	k: 4199	n:90000
Cons ci ratio: 2.516467e-01	ci left: 2.350718e-03	ci right 3.037516e-03	k: 241	n:90000
KS ci ratio: 1.834498e-02	ci left: 3.334792e-01	ci right 3.396646e-01	k: 30291	n:90000
WEE1   90000 perm   22 sec   (4135 perm/sec)   p_kst 3.365667e-01   p_cons 2.677778e-03   p_joint 4.665556e-02

Joint ci ratio: 6.354445e-02	ci left: 3.549385e-02	ci right 3.783312e-02	k: 3665	n:100000
Cons ci ratio: 2.347778e-01	ci left: 2.453746e-03	ci right 3.115618e-03	k: 277	n:100000
KS ci ratio: 1.740193e-02	ci left: 3.336809e-01	ci right 3.395485e-01	k: 33661	n:100000
WEE1   100000 perm   25 sec   (4056 perm/sec)   p_kst 3.366100e-01   p_cons 2.770000e-03   p_joint 3.665000e-02

Joint ci ratio: 6.685257e-02	ci left: 2.929489e-02	ci right 3.132997e-02	k: 3333	n:110000
Cons ci ratio: 2.271532e-01	ci left: 2.393404e-03	ci right 3.015095e-03	k: 296	n:110000
KS ci ratio: 1.659114e-02	ci left: 3.338436e-01	ci right 3.394378e-01	k: 37030	n:110000
WEE1   110000 perm   28 sec   (3987 perm/sec)   p_kst 3.366364e-01   p_cons 2.690909e-03   p_joint 3.030000e-02

Joint ci ratio: 5.286214e-02	ci left: 4.265720e-02	ci right 4.498157e-02	k: 5257	n:120000
Cons ci ratio: 2.164800e-01	ci left: 2.430075e-03	ci right 3.027693e-03	k: 326	n:120000
KS ci ratio: 1.590215e-02	ci left: 3.334771e-01	ci right 3.388309e-01	k: 40338	n:120000
WEE1   120000 perm   31 sec   (3913 perm/sec)   p_kst 3.361500e-01   p_cons 2.716667e-03   p_joint 4.380833e-02

Joint ci ratio: 4.883502e-02	ci left: 4.606868e-02	ci right 4.838233e-02	k: 6138	n:130000
Cons ci ratio: 2.083563e-01	ci left: 2.432510e-03	ci right 3.005415e-03	k: 352	n:130000
KS ci ratio: 1.527871e-02	ci left: 3.335704e-01	ci right 3.387138e-01	k: 43698	n:130000
WEE1   130000 perm   34 sec   (3842 perm/sec)   p_kst 3.361385e-01   p_cons 2.707692e-03   p_joint 4.721538e-02

Joint ci ratio: 5.694850e-02	ci left: 3.180267e-02	ci right 3.367389e-02	k: 4582	n:140000
Cons ci ratio: 2.021559e-01	ci left: 2.407823e-03	ci right 2.955955e-03	k: 374	n:140000
KS ci ratio: 1.470280e-02	ci left: 3.342743e-01	ci right 3.392325e-01	k: 47145	n:140000
WEE1   140000 perm   37 sec   (3777 perm/sec)   p_kst 3.367500e-01   p_cons 2.671429e-03   p_joint 3.272857e-02

Joint ci ratio: 5.297349e-02	ci left: 3.428623e-02	ci right 3.615846e-02	k: 5282	n:150000
Cons ci ratio: 1.952490e-01	ci left: 2.418350e-03	ci right 2.947832e-03	k: 401	n:150000
KS ci ratio: 1.419696e-02	ci left: 3.345878e-01	ci right 3.393785e-01	k: 50547	n:150000
WEE1   150000 perm   40 sec   (3714 perm/sec)   p_kst 3.369800e-01   p_cons 2.673333e-03   p_joint 3.521333e-02

Joint ci ratio: 5.890719e-02	ci left: 2.613734e-02	ci right 2.772987e-02	k: 4308	n:160000
Cons ci ratio: 1.914823e-01	ci left: 2.362355e-03	ci right 2.868437e-03	k: 417	n:160000
KS ci ratio: 1.374496e-02	ci left: 3.347024e-01	ci right 3.393410e-01	k: 53923	n:160000
WEE1   160000 perm   44 sec   (3653 perm/sec)   p_kst 3.370187e-01   p_cons 2.606250e-03   p_joint 2.692500e-02

Joint ci ratio: 5.817038e-02	ci left: 2.526028e-02	ci right 2.677947e-02	k: 4422	n:170000
Cons ci ratio: 1.862123e-01	ci left: 2.357895e-03	ci right 2.847548e-03	k: 441	n:170000
KS ci ratio: 1.334568e-02	ci left: 3.344005e-01	ci right 3.388992e-01	k: 57230	n:170000
WEE1   170000 perm   47 sec   (3593 perm/sec)   p_kst 3.366471e-01   p_cons 2.594118e-03   p_joint 2.601176e-02

Joint ci ratio: 5.113453e-02	ci left: 3.080761e-02	ci right 3.242974e-02	k: 5690	n:180000
Cons ci ratio: 1.811600e-01	ci left: 2.359404e-03	ci right 2.834619e-03	k: 466	n:180000
KS ci ratio: 1.296057e-02	ci left: 3.347774e-01	ci right 3.391501e-01	k: 60653	n:180000
WEE1   180000 perm   51 sec   (3535 perm/sec)   p_kst 3.369611e-01   p_cons 2.588889e-03   p_joint 3.161111e-02

Joint ci ratio: 5.043860e-02	ci left: 3.003285e-02	ci right 3.159203e-02	k: 5853	n:190000
Cons ci ratio: 1.768586e-01	ci left: 2.350853e-03	ci right 2.811901e-03	k: 489	n:190000
KS ci ratio: 1.260831e-02	ci left: 3.350689e-01	ci right 3.393256e-01	k: 64067	n:190000
WEE1   190000 perm   55 sec   (3478 perm/sec)   p_kst 3.371947e-01   p_cons 2.573684e-03   p_joint 3.080526e-02

Joint ci ratio: 5.083310e-02	ci left: 2.814050e-02	ci right 2.961319e-02	k: 5774	n:200000
Cons ci ratio: 1.720113e-01	ci left: 2.367201e-03	ci right 2.817409e-03	k: 517	n:200000
KS ci ratio: 1.228851e-02	ci left: 3.351430e-01	ci right 3.392918e-01	k: 67443	n:200000
WEE1   200000 perm   58 sec   (3423 perm/sec)   p_kst 3.372150e-01   p_cons 2.585000e-03   p_joint 2.887000e-02

Joint ci ratio: 4.798514e-02	ci left: 3.006043e-02	ci right 3.154303e-02	k: 6467	n:210000
Cons ci ratio: 1.678504e-01	ci left: 2.373022e-03	ci right 2.812316e-03	k: 543	n:210000
KS ci ratio: 1.198868e-02	ci left: 3.353301e-01	ci right 3.393792e-01	k: 70844	n:210000
WEE1   210000 perm   62 sec   (3372 perm/sec)   p_kst 3.373524e-01   p_cons 2.585714e-03   p_joint 3.079524e-02

Joint ci ratio: 4.284232e-02	ci left: 3.587316e-02	ci right 3.744817e-02	k: 8064	n:220000
Cons ci ratio: 1.639775e-01	ci left: 2.378432e-03	ci right 2.807568e-03	k: 569	n:220000
KS ci ratio: 1.170311e-02	ci left: 3.357555e-01	ci right 3.397125e-01	k: 74301	n:220000
WEE1   220000 perm   66 sec   (3325 perm/sec)   p_kst 3.377318e-01   p_cons 2.586364e-03   p_joint 3.665455e-02

Joint ci ratio: 3.935084e-02	ci left: 4.054639e-02	ci right 4.217823e-02	k: 9512	n:230000
Cons ci ratio: 1.596907e-01	ci left: 2.404349e-03	ci right 2.825732e-03	k: 600	n:230000
KS ci ratio: 1.145147e-02	ci left: 3.355804e-01	ci right 3.394497e-01	k: 77628	n:230000
WEE1   230000 perm   70 sec   (3276 perm/sec)   p_kst 3.375130e-01   p_cons 2.608696e-03   p_joint 4.135652e-02

Joint ci ratio: 3.886586e-02	ci left: 3.987166e-02	ci right 4.145612e-02	k: 9758	n:240000
Cons ci ratio: 1.556001e-01	ci left: 2.432245e-03	ci right 2.846579e-03	k: 632	n:240000
KS ci ratio: 1.122010e-02	ci left: 3.352336e-01	ci right 3.390203e-01	k: 80910	n:240000
WEE1   240000 perm   74 sec   (3228 perm/sec)   p_kst 3.371250e-01   p_cons 2.633333e-03   p_joint 4.065833e-02

Joint ci ratio: 3.943594e-02	ci left: 3.726973e-02	ci right 3.877300e-02	k: 9504	n:250000
Cons ci ratio: 1.519230e-01	ci left: 2.454186e-03	ci right 2.861480e-03	k: 663	n:250000
KS ci ratio: 1.099413e-02	ci left: 3.352429e-01	ci right 3.389529e-01	k: 84274	n:250000
WEE1   250000 perm   79 sec   (3182 perm/sec)   p_kst 3.370960e-01   p_cons 2.652000e-03   p_joint 3.801600e-02

Joint ci ratio: 3.961757e-02	ci left: 3.556908e-02	ci right 3.701051e-02	k: 9434	n:260000
Cons ci ratio: 1.492505e-01	ci left: 2.448624e-03	ci right 2.847207e-03	k: 687	n:260000
KS ci ratio: 1.078313e-02	ci left: 3.351753e-01	ci right 3.388129e-01	k: 87618	n:260000
WEE1   260000 perm   83 sec   (3136 perm/sec)   p_kst 3.369923e-01   p_cons 2.642308e-03   p_joint 3.628462e-02

Joint ci ratio: 3.966916e-02	ci left: 3.421089e-02	ci right 3.559912e-02	k: 9423	n:270000
Cons ci ratio: 1.452888e-01	ci left: 2.493493e-03	ci right 2.887673e-03	k: 725	n:270000
KS ci ratio: 1.058086e-02	ci left: 3.352392e-01	ci right 3.388088e-01	k: 90996	n:270000
WEE1   270000 perm   87 sec   (3089 perm/sec)   p_kst 3.370222e-01   p_cons 2.685185e-03   p_joint 3.490000e-02

Joint ci ratio: 4.073511e-02	ci left: 3.136177e-02	ci right 3.266937e-02	k: 8963	n:280000
Cons ci ratio: 1.430417e-01	ci left: 2.483619e-03	ci right 2.869646e-03	k: 748	n:280000
KS ci ratio: 1.039404e-02	ci left: 3.351064e-01	ci right 3.386112e-01	k: 94320	n:280000
WEE1   280000 perm   92 sec   (3046 perm/sec)   p_kst 3.368571e-01   p_cons 2.671429e-03   p_joint 3.201071e-02

Joint ci ratio: 3.640615e-02	ci left: 3.774111e-02	ci right 3.914399e-02	k: 11147	n:290000
Cons ci ratio: 1.398999e-01	ci left: 2.511071e-03	ci right 2.892078e-03	k: 782	n:290000
KS ci ratio: 1.021638e-02	ci left: 3.350006e-01	ci right 3.384441e-01	k: 97649	n:290000
WEE1   290000 perm   97 sec   (2986 perm/sec)   p_kst 3.367207e-01   p_cons 2.696552e-03   p_joint 3.843793e-02

Joint ci ratio: 3.792741e-02	ci left: 3.373084e-02	ci right 3.503817e-02	k: 10314	n:300000
Cons ci ratio: 1.378903e-01	ci left: 2.501371e-03	ci right 2.875006e-03	k: 805	n:300000
KS ci ratio: 1.004041e-02	ci left: 3.352186e-01	ci right 3.386046e-01	k: 101073	n:300000
WEE1   300000 perm   102 sec   (2944 perm/sec)   p_kst 3.369100e-01   p_cons 2.683333e-03   p_joint 3.438000e-02

Joint ci ratio: 3.542422e-02	ci left: 3.732646e-02	ci right 3.867574e-02	k: 11779	n:310000
Cons ci ratio: 1.353118e-01	ci left: 2.517265e-03	ci right 2.885678e-03	k: 836	n:310000
KS ci ratio: 9.879861e-03	ci left: 3.351233e-01	ci right 3.384539e-01	k: 104404	n:310000
WEE1   310000 perm   107 sec   (2897 perm/sec)   p_kst 3.367871e-01   p_cons 2.696774e-03   p_joint 3.799677e-02

Joint ci ratio: 3.546484e-02	ci left: 3.612244e-02	ci right 3.742972e-02	k: 11767	n:320000
Cons ci ratio: 1.328727e-01	ci left: 2.532227e-03	ci right 2.895622e-03	k: 867	n:320000
KS ci ratio: 9.724461e-03	ci left: 3.351406e-01	ci right 3.384186e-01	k: 107769	n:320000
WEE1   320000 perm   112 sec   (2855 perm/sec)   p_kst 3.367781e-01   p_cons 2.709375e-03   p_joint 3.677188e-02

Joint ci ratio: 3.273590e-02	ci left: 4.096034e-02	ci right 4.232651e-02	k: 13741	n:330000
Cons ci ratio: 1.310736e-01	ci left: 2.525819e-03	ci right 2.883003e-03	k: 891	n:330000
KS ci ratio: 9.574286e-03	ci left: 3.352449e-01	ci right 3.384731e-01	k: 111163	n:330000
WEE1   330000 perm   117 sec   (2812 perm/sec)   p_kst 3.368576e-01   p_cons 2.700000e-03   p_joint 4.163939e-02

Joint ci ratio: 3.535862e-02	ci left: 3.427103e-02	ci right 3.550751e-02	k: 11861	n:340000
Cons ci ratio: 1.293457e-01	ci left: 2.519818e-03	ci right 2.871096e-03	k: 915	n:340000
KS ci ratio: 9.430426e-03	ci left: 3.353641e-01	ci right 3.385446e-01	k: 114564	n:340000
WEE1   340000 perm   123 sec   (2775 perm/sec)   p_kst 3.369529e-01   p_cons 2.691176e-03   p_joint 3.488529e-02

Joint ci ratio: 3.603617e-02	ci left: 3.211323e-02	ci right 3.329452e-02	k: 11445	n:350000
Cons ci ratio: 1.272103e-01	ci left: 2.533554e-03	ci right 2.880476e-03	k: 946	n:350000
KS ci ratio: 9.296189e-03	ci left: 3.353169e-01	ci right 3.384515e-01	k: 117909	n:350000
WEE1   350000 perm   128 sec   (2734 perm/sec)   p_kst 3.368829e-01   p_cons 2.702857e-03   p_joint 3.270000e-02

Joint ci ratio: 3.529730e-02	ci left: 3.254002e-02	ci right 3.371196e-02	k: 11924	n:360000
Cons ci ratio: 1.251772e-01	ci left: 2.546571e-03	ci right 2.889289e-03	k: 977	n:360000
KS ci ratio: 9.164562e-03	ci left: 3.354170e-01	ci right 3.385078e-01	k: 121306	n:360000
WEE1   360000 perm   134 sec   (2696 perm/sec)   p_kst 3.369611e-01   p_cons 2.713889e-03   p_joint 3.312222e-02

Joint ci ratio: 3.298006e-02	ci left: 3.617151e-02	ci right 3.738711e-02	k: 13607	n:370000
Cons ci ratio: 1.235460e-01	ci left: 2.545829e-03	ci right 2.883656e-03	k: 1003	n:370000
KS ci ratio: 9.036296e-03	ci left: 3.356145e-01	ci right 3.386637e-01	k: 124741	n:370000
WEE1   370000 perm   139 sec   (2661 perm/sec)   p_kst 3.371378e-01   p_cons 2.710811e-03   p_joint 3.677568e-02

Joint ci ratio: 3.133920e-02	ci left: 3.892468e-02	ci right 4.016656e-02	k: 15026	n:380000
Cons ci ratio: 1.222151e-01	ci left: 2.534948e-03	ci right 2.867445e-03	k: 1025	n:380000
KS ci ratio: 8.916941e-03	ci left: 3.356180e-01	ci right 3.386266e-01	k: 128106	n:380000
WEE1   380000 perm   145 sec   (2626 perm/sec)   p_kst 3.371211e-01   p_cons 2.697368e-03   p_joint 3.954211e-02

Joint ci ratio: 3.094991e-02	ci left: 3.889592e-02	ci right 4.012119e-02	k: 15407	n:390000
Cons ci ratio: 1.203519e-01	ci left: 2.549512e-03	ci right 2.878458e-03	k: 1057	n:390000
KS ci ratio: 8.803153e-03	ci left: 3.355728e-01	ci right 3.385425e-01	k: 131452	n:390000
WEE1   390000 perm   151 sec   (2590 perm/sec)   p_kst 3.370564e-01   p_cons 2.710256e-03   p_joint 3.950513e-02

Joint ci ratio: 3.170730e-02	ci left: 3.622114e-02	ci right 3.739058e-02	k: 14721	n:400000
Cons ci ratio: 1.192313e-01	ci left: 2.534275e-03	ci right 2.857996e-03	k: 1077	n:400000
KS ci ratio: 8.693322e-03	ci left: 3.355451e-01	ci right 3.384773e-01	k: 134804	n:400000
WEE1   400000 perm   157 sec   (2554 perm/sec)   p_kst 3.370100e-01   p_cons 2.692500e-03   p_joint 3.680250e-02

Joint ci ratio: 3.073105e-02	ci left: 3.758385e-02	ci right 3.875927e-02	k: 15649	n:410000
Cons ci ratio: 1.180336e-01	ci left: 2.524529e-03	ci right 2.843540e-03	k: 1099	n:410000
KS ci ratio: 8.588157e-03	ci left: 3.354849e-01	ci right 3.383809e-01	k: 138142	n:410000
WEE1   410000 perm   162 sec   (2526 perm/sec)   p_kst 3.369317e-01   p_cons 2.680488e-03   p_joint 3.816829e-02

Joint ci ratio: 3.031948e-02	ci left: 3.769558e-02	ci right 3.885842e-02	k: 16075	n:420000
Cons ci ratio: 1.161471e-01	ci left: 2.547627e-03	ci right 2.864058e-03	k: 1135	n:420000
KS ci ratio: 8.486492e-03	ci left: 3.354396e-01	ci right 3.383008e-01	k: 141485	n:420000
WEE1   420000 perm   168 sec   (2495 perm/sec)   p_kst 3.368690e-01   p_cons 2.702381e-03   p_joint 3.827381e-02

Joint ci ratio: 3.106662e-02	ci left: 3.514971e-02	ci right 3.626121e-02	k: 15352	n:430000
Cons ci ratio: 1.149397e-01	ci left: 2.542580e-03	ci right 2.854879e-03	k: 1159	n:430000
KS ci ratio: 8.386215e-03	ci left: 3.355105e-01	ci right 3.383383e-01	k: 144877	n:430000
WEE1   430000 perm   174 sec   (2467 perm/sec)   p_kst 3.369233e-01   p_cons 2.695349e-03   p_joint 3.570233e-02

Joint ci ratio: 3.090595e-02	ci left: 3.472734e-02	ci right 3.581970e-02	k: 15519	n:440000
Cons ci ratio: 1.140108e-01	ci left: 2.526738e-03	ci right 2.834414e-03	k: 1178	n:440000
KS ci ratio: 8.291097e-03	ci left: 3.354875e-01	ci right 3.382828e-01	k: 148229	n:440000
WEE1   440000 perm   180 sec   (2439 perm/sec)   p_kst 3.368841e-01   p_cons 2.677273e-03   p_joint 3.527045e-02

Joint ci ratio: 2.886479e-02	ci left: 3.880255e-02	ci right 3.994117e-02	k: 17716	n:450000
Cons ci ratio: 1.125870e-01	ci left: 2.535366e-03	ci right 2.839982e-03	k: 1208	n:450000
KS ci ratio: 8.196942e-03	ci left: 3.355856e-01	ci right 3.383499e-01	k: 151635	n:450000
WEE1   450000 perm   187 sec   (2406 perm/sec)   p_kst 3.369667e-01   p_cons 2.684444e-03   p_joint 3.936889e-02

Joint ci ratio: 3.024928e-02	ci left: 3.468872e-02	ci right 3.575628e-02	k: 16201	n:460000
Cons ci ratio: 1.116680e-01	ci left: 2.522508e-03	ci right 2.822941e-03	k: 1228	n:460000
KS ci ratio: 8.106199e-03	ci left: 3.356644e-01	ci right 3.383985e-01	k: 155034	n:460000
WEE1   460000 perm   193 sec   (2381 perm/sec)   p_kst 3.370304e-01   p_cons 2.669565e-03   p_joint 3.521957e-02

Joint ci ratio: 3.012171e-02	ci left: 3.425672e-02	ci right 3.530647e-02	k: 16346	n:470000
Cons ci ratio: 1.105495e-01	ci left: 2.520550e-03	ci right 2.817548e-03	k: 1253	n:470000
KS ci ratio: 8.018214e-03	ci left: 3.357506e-01	ci right 3.384557e-01	k: 158438	n:470000
WEE1   470000 perm   200 sec   (2356 perm/sec)   p_kst 3.371021e-01   p_cons 2.665957e-03   p_joint 3.477872e-02

Joint ci ratio: 3.034602e-02	ci left: 3.308580e-02	ci right 3.410734e-02	k: 16125	n:480000
Cons ci ratio: 1.095068e-01	ci left: 2.516663e-03	ci right 2.810225e-03	k: 1277	n:480000
KS ci ratio: 7.934216e-03	ci left: 3.357668e-01	ci right 3.384435e-01	k: 161810	n:480000
WEE1   480000 perm   206 sec   (2327 perm/sec)   p_kst 3.371042e-01   p_cons 2.660417e-03   p_joint 3.359375e-02

Joint ci ratio: 3.030920e-02	ci left: 3.250967e-02	ci right 3.351219e-02	k: 16174	n:490000
Cons ci ratio: 1.086187e-01	ci left: 2.506990e-03	ci right 2.796900e-03	k: 1298	n:490000
KS ci ratio: 7.853844e-03	ci left: 3.357233e-01	ci right 3.383725e-01	k: 165153	n:490000
WEE1   490000 perm   213 sec   (2300 perm/sec)   p_kst 3.370469e-01   p_cons 2.648980e-03   p_joint 3.300816e-02

Joint ci ratio: 3.006406e-02	ci left: 3.238942e-02	ci right 3.338000e-02	k: 16441	n:500000
Cons ci ratio: 1.076293e-01	ci left: 2.503551e-03	ci right 2.790260e-03	k: 1322	n:500000
KS ci ratio: 7.773499e-03	ci left: 3.358176e-01	ci right 3.384403e-01	k: 168564	n:500000
WEE1   500000 perm   220 sec   (2273 perm/sec)   p_kst 3.371280e-01   p_cons 2.644000e-03   p_joint 3.288200e-02

Joint ci ratio: 2.969091e-02	ci left: 3.255813e-02	ci right 3.354130e-02	k: 16854	n:510000
Cons ci ratio: 1.065871e-01	ci left: 2.504077e-03	ci right 2.787895e-03	k: 1348	n:510000
KS ci ratio: 7.695739e-03	ci left: 3.358986e-01	ci right 3.384954e-01	k: 171970	n:510000
WEE1   510000 perm   227 sec   (2247 perm/sec)   p_kst 3.371961e-01   p_cons 2.643137e-03   p_joint 3.304706e-02

Joint ci ratio: 2.929534e-02	ci left: 3.279871e-02	ci right 3.377573e-02	k: 17308	n:520000
Cons ci ratio: 1.055746e-01	ci left: 2.504595e-03	ci right 2.785607e-03	k: 1374	n:520000
KS ci ratio: 7.620497e-03	ci left: 3.359630e-01	ci right 3.385349e-01	k: 175369	n:520000
WEE1   520000 perm   234 sec   (2225 perm/sec)   p_kst 3.372481e-01   p_cons 2.642308e-03   p_joint 3.328462e-02

Joint ci ratio: 3.086373e-02	ci left: 2.908168e-02	ci right 2.999517e-02	k: 15654	n:530000
Cons ci ratio: 1.048157e-01	ci left: 2.494081e-03	ci right 2.771778e-03	k: 1394	n:530000
KS ci ratio: 7.548120e-03	ci left: 3.359837e-01	ci right 3.385312e-01	k: 178746	n:530000
WEE1   530000 perm   240 sec   (2205 perm/sec)   p_kst 3.372566e-01   p_cons 2.630189e-03   p_joint 2.953585e-02

Joint ci ratio: 3.107747e-02	ci left: 2.817542e-02	ci right 2.906668e-02	k: 15454	n:540000
Cons ci ratio: 1.035969e-01	ci left: 2.507413e-03	ci right 2.783151e-03	k: 1427	n:540000
KS ci ratio: 7.478572e-03	ci left: 3.359557e-01	ci right 3.384794e-01	k: 182097	n:540000
WEE1   540000 perm   248 sec   (2182 perm/sec)   p_kst 3.372167e-01   p_cons 2.642593e-03   p_joint 2.861852e-02

Joint ci ratio: 2.903655e-02	ci left: 3.160864e-02	ci right 3.254175e-02	k: 17640	n:550000
Cons ci ratio: 1.027373e-01	ci left: 2.504334e-03	ci right 2.777310e-03	k: 1451	n:550000
KS ci ratio: 7.410128e-03	ci left: 3.359760e-01	ci right 3.384766e-01	k: 185474	n:550000
WEE1   550000 perm   255 sec   (2160 perm/sec)   p_kst 3.372255e-01   p_cons 2.638182e-03   p_joint 3.207273e-02

Joint ci ratio: 3.055617e-02	ci left: 2.811359e-02	ci right 2.898772e-02	k: 15987	n:560000
Cons ci ratio: 1.019335e-01	ci left: 2.499634e-03	ci right 2.769838e-03	k: 1474	n:560000
KS ci ratio: 7.343881e-03	ci left: 3.359742e-01	ci right 3.384524e-01	k: 188839	n:560000
WEE1   560000 perm   262 sec   (2137 perm/sec)   p_kst 3.372125e-01   p_cons 2.632143e-03   p_joint 2.854821e-02

Joint ci ratio: 3.015038e-02	ci left: 2.836735e-02	ci right 2.923745e-02	k: 16416	n:570000
Cons ci ratio: 1.013179e-01	ci left: 2.486556e-03	ci right 2.753627e-03	k: 1492	n:570000
KS ci ratio: 7.279352e-03	ci left: 3.359744e-01	ci right 3.384307e-01	k: 192205	n:570000
WEE1   570000 perm   269 sec   (2115 perm/sec)   p_kst 3.372018e-01   p_cons 2.617544e-03   p_joint 2.880000e-02

Joint ci ratio: 3.029127e-02	ci left: 2.763854e-02	ci right 2.849032e-02	k: 16276	n:580000
Cons ci ratio: 1.003147e-01	ci left: 2.494105e-03	ci right 2.759178e-03	k: 1522	n:580000
KS ci ratio: 7.214518e-03	ci left: 3.360970e-01	ci right 3.385322e-01	k: 195642	n:580000
WEE1   580000 perm   277 sec   (2092 perm/sec)   p_kst 3.373138e-01   p_cons 2.624138e-03   p_joint 2.806207e-02

Joint ci ratio: 3.026809e-02	ci left: 2.722383e-02	ci right 2.806217e-02	k: 16308	n:590000
Cons ci ratio: 9.953376e-02	ci left: 2.491493e-03	ci right 2.754107e-03	k: 1546	n:590000
KS ci ratio: 7.152443e-03	ci left: 3.361494e-01	ci right 3.385640e-01	k: 199040	n:590000
WEE1   590000 perm   285 sec   (2070 perm/sec)   p_kst 3.373559e-01   p_cons 2.620339e-03   p_joint 2.764068e-02

Outputting figure to mutsig2_images.part000000000191/WEE1.3_1985_590000_0.33736_0.0026203_0.027641.png
                gene_name: WEE1
               theta_stop: 0.100 
                    nperm: 590000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.0026 
      ci_cons_bounds_left: 0.0025 
     ci_cons_bounds_right: 0.0028 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.028 

Current progress: 49 percent done.
WISP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.827749e-02	ci left: 6.483055e-01	ci right 6.670026e-01	k: 6577	n:10000
Cons ci ratio: 2.527067e-02	ci left: 6.973649e-01	ci right 7.153147e-01	k: 7064	n:10000
KS ci ratio: 4.629413e-02	ci left: 4.078097e-01	ci right 4.272384e-01	k: 4175	n:10000
WISP3   10000 perm   2 sec   (5689 perm/sec)   p_kst 4.175000e-01   p_cons 7.064000e-01   p_joint 6.577000e-01

Outputting figure to mutsig2_images.part000000000191/WISP3.3_1139_10000_0.4175_0.7064_0.6577.png
                gene_name: WISP3
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 51 percent done.
WNT11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.092823e-03	ci left: 9.733385e-01	ci right 9.793796e-01	k: 9765	n:10000
Cons ci ratio: 4.748480e-02	ci left: 3.955567e-01	ci right 4.148985e-01	k: 4052	n:10000
KS ci ratio: 2.789543e-02	ci left: 6.544443e-01	ci right 6.730602e-01	k: 6638	n:10000
WNT11   10000 perm   2 sec   (5441 perm/sec)   p_kst 6.638000e-01   p_cons 4.052000e-01   p_joint 9.765000e-01

Outputting figure to mutsig2_images.part000000000191/WNT11.3_1085_10000_0.6638_0.4052_0.9765.png
                gene_name: WNT11
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 53 percent done.
WNT2B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.881451e-01	ci left: 3.767505e-02	ci right 4.559480e-02	k: 415	n:10000
Cons ci ratio: 9.055796e-02	ci left: 1.506072e-01	ci right 1.649928e-01	k: 1577	n:10000
KS ci ratio: 3.469974e-01	ci left: 1.041531e-02	ci right 1.487532e-02	k: 125	n:10000
WNT2B   10000 perm   2 sec   (5361 perm/sec)   p_kst 1.250000e-02   p_cons 1.577000e-01   p_joint 4.150000e-02

Joint ci ratio: 1.287420e-01	ci left: 4.144132e-02	ci right 4.719210e-02	k: 885	n:20000
Cons ci ratio: 6.688983e-02	ci left: 1.416260e-01	ci right 1.514770e-01	k: 2930	n:20000
KS ci ratio: 2.378366e-01	ci left: 1.180547e-02	ci right 1.503828e-02	k: 267	n:20000
WNT2B   20000 perm   4 sec   (4895 perm/sec)   p_kst 1.335000e-02   p_cons 1.465000e-01   p_joint 4.425000e-02

Joint ci ratio: 1.056181e-01	ci left: 4.157680e-02	ci right 4.624538e-02	k: 1316	n:30000
Cons ci ratio: 5.474333e-02	ci left: 1.419561e-01	ci right 1.499792e-01	k: 4378	n:30000
KS ci ratio: 1.917907e-01	ci left: 1.241520e-02	ci right 1.508019e-02	k: 411	n:30000
WNT2B   30000 perm   6 sec   (4742 perm/sec)   p_kst 1.370000e-02   p_cons 1.459333e-01   p_joint 4.386667e-02

Joint ci ratio: 9.745538e-02	ci left: 3.697735e-02	ci right 4.078997e-02	k: 1554	n:40000
Cons ci ratio: 4.731282e-02	ci left: 1.429985e-01	ci right 1.499529e-01	k: 5858	n:40000
KS ci ratio: 1.658414e-01	ci left: 1.263170e-02	ci right 1.493968e-02	k: 550	n:40000
WNT2B   40000 perm   9 sec   (4639 perm/sec)   p_kst 1.375000e-02   p_cons 1.464500e-01   p_joint 3.885000e-02

Joint ci ratio: 7.495786e-02	ci left: 4.991278e-02	ci right 5.381946e-02	k: 2592	n:50000
Cons ci ratio: 4.240873e-02	ci left: 1.428363e-01	ci right 1.490449e-01	k: 7296	n:50000
KS ci ratio: 1.478715e-01	ci left: 1.283429e-02	ci right 1.490272e-02	k: 692	n:50000
WNT2B   50000 perm   11 sec   (4514 perm/sec)   p_kst 1.384000e-02   p_cons 1.459200e-01   p_joint 5.184000e-02

Joint ci ratio: 7.929855e-02	ci left: 3.757939e-02	ci right 4.069873e-02	k: 2347	n:60000
Cons ci ratio: 3.875105e-02	ci left: 1.428693e-01	ci right 1.485316e-01	k: 8741	n:60000
KS ci ratio: 1.356176e-01	ci left: 1.280124e-02	ci right 1.467957e-02	k: 823	n:60000
WNT2B   60000 perm   14 sec   (4352 perm/sec)   p_kst 1.371667e-02   p_cons 1.456833e-01   p_joint 3.911667e-02

Joint ci ratio: 7.784657e-02	ci left: 3.359466e-02	ci right 3.632978e-02	k: 2446	n:70000
Cons ci ratio: 3.582720e-02	ci left: 1.434201e-01	ci right 1.486664e-01	k: 10222	n:70000
KS ci ratio: 1.255135e-01	ci left: 1.287962e-02	ci right 1.461817e-02	k: 961	n:70000
WNT2B   70000 perm   17 sec   (4223 perm/sec)   p_kst 1.372857e-02   p_cons 1.460286e-01   p_joint 3.494286e-02

Joint ci ratio: 8.391954e-02	ci left: 2.543468e-02	ci right 2.767483e-02	k: 2123	n:80000
Cons ci ratio: 3.347377e-02	ci left: 1.438825e-01	ci right 1.487932e-01	k: 11706	n:80000
KS ci ratio: 1.179759e-01	ci left: 1.280883e-02	ci right 1.442673e-02	k: 1088	n:80000
WNT2B   80000 perm   19 sec   (4105 perm/sec)   p_kst 1.360000e-02   p_cons 1.463250e-01   p_joint 2.653750e-02

Joint ci ratio: 7.917974e-02	ci left: 2.546038e-02	ci right 2.757028e-02	k: 2385	n:90000
Cons ci ratio: 3.166560e-02	ci left: 1.431912e-01	ci right 1.478094e-01	k: 13094	n:90000
KS ci ratio: 1.115581e-01	ci left: 1.277782e-02	ci right 1.429822e-02	k: 1217	n:90000
WNT2B   90000 perm   22 sec   (4027 perm/sec)   p_kst 1.352222e-02   p_cons 1.454889e-01   p_joint 2.650000e-02

Joint ci ratio: 7.402114e-02	ci left: 2.626927e-02	ci right 2.829827e-02	k: 2727	n:100000
Cons ci ratio: 3.004306e-02	ci left: 1.432901e-01	ci right 1.476705e-01	k: 14547	n:100000
KS ci ratio: 1.046380e-01	ci left: 1.311530e-02	ci right 1.457310e-02	k: 1383	n:100000
WNT2B   100000 perm   25 sec   (3959 perm/sec)   p_kst 1.383000e-02   p_cons 1.454700e-01   p_joint 2.727000e-02

Joint ci ratio: 6.932532e-02	ci left: 2.726538e-02	ci right 2.923233e-02	k: 3106	n:110000
Cons ci ratio: 2.869932e-02	ci left: 1.429241e-01	ci right 1.470946e-01	k: 15950	n:110000
KS ci ratio: 1.001830e-01	ci left: 1.303909e-02	ci right 1.442308e-02	k: 1509	n:110000
WNT2B   110000 perm   28 sec   (3895 perm/sec)   p_kst 1.371818e-02   p_cons 1.450000e-01   p_joint 2.823636e-02

Joint ci ratio: 6.967445e-02	ci left: 2.480381e-02	ci right 2.660254e-02	k: 3083	n:120000
Cons ci ratio: 2.742692e-02	ci left: 1.434680e-01	ci right 1.474658e-01	k: 17455	n:120000
KS ci ratio: 9.569068e-02	ci left: 1.313128e-02	ci right 1.445904e-02	k: 1654	n:120000
WNT2B   120000 perm   31 sec   (3811 perm/sec)   p_kst 1.378333e-02   p_cons 1.454583e-01   p_joint 2.569167e-02

Outputting figure to mutsig2_images.part000000000191/WNT2B.3_1329_120000_0.013783_0.14546_0.025692.png
                gene_name: WNT2B
               theta_stop: 0.096 
                    nperm: 120000 
                     p_ks: 0.014 
        ci_ks_bounds_left: 0.013 
       ci_ks_bounds_right: 0.014 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.027 

Current progress: 55 percent done.
WNT5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.540739e-03	ci left: 9.696322e-01	ci right 9.760884e-01	k: 9730	n:10000
Cons ci ratio: 1.709886e-03	ci left: 9.971567e-01	ci right 9.989329e-01	k: 9982	n:10000
KS ci ratio: 1.277098e-02	ci left: 8.981605e-01	ci right 9.098029e-01	k: 9041	n:10000
WNT5A   10000 perm   2 sec   (5705 perm/sec)   p_kst 9.041000e-01   p_cons 9.982000e-01   p_joint 9.730000e-01

Outputting figure to mutsig2_images.part000000000191/WNT5A.3_1163_10000_0.9041_0.9982_0.973.png
                gene_name: WNT5A
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 57 percent done.
XBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.742056e-02	ci left: 1.600322e-01	ci right 1.747621e-01	k: 1673	n:10000
Cons ci ratio: 2.155899e-01	ci left: 2.854258e-02	ci right 3.553353e-02	k: 319	n:10000
KS ci ratio: 2.380899e-02	ci left: 7.216873e-01	ci right 7.391782e-01	k: 7305	n:10000
XBP1   10000 perm   2 sec   (5984 perm/sec)   p_kst 7.305000e-01   p_cons 3.190000e-02   p_joint 1.673000e-01

Joint ci ratio: 7.916654e-02	ci left: 1.048604e-01	ci right 1.135536e-01	k: 2183	n:20000
Cons ci ratio: 1.572061e-01	ci left: 2.777552e-02	ci right 3.256237e-02	k: 602	n:20000
KS ci ratio: 1.660717e-02	ci left: 7.296808e-01	ci right 7.419505e-01	k: 14717	n:20000
XBP1   20000 perm   4 sec   (5145 perm/sec)   p_kst 7.358500e-01   p_cons 3.010000e-02   p_joint 1.091500e-01

Joint ci ratio: 5.780861e-02	ci left: 1.290447e-01	ci right 1.367598e-01	k: 3986	n:30000
Cons ci ratio: 1.273109e-01	ci left: 2.867995e-02	ci right 3.261164e-02	k: 918	n:30000
KS ci ratio: 1.361150e-02	ci left: 7.293296e-01	ci right 7.393583e-01	k: 22031	n:30000
XBP1   30000 perm   6 sec   (4862 perm/sec)   p_kst 7.343667e-01   p_cons 3.060000e-02   p_joint 1.328667e-01

Joint ci ratio: 4.669358e-02	ci left: 1.462909e-01	ci right 1.533100e-01	k: 5991	n:40000
Cons ci ratio: 1.096258e-01	ci left: 2.927446e-02	ci right 3.269407e-02	k: 1238	n:40000
KS ci ratio: 1.175143e-02	ci left: 7.312235e-01	ci right 7.398923e-01	k: 29423	n:40000
XBP1   40000 perm   9 sec   (4701 perm/sec)   p_kst 7.355750e-01   p_cons 3.095000e-02   p_joint 1.497750e-01

Joint ci ratio: 4.385449e-02	ci left: 1.347502e-01	ci right 1.408119e-01	k: 6888	n:50000
Cons ci ratio: 9.897129e-02	ci left: 2.891245e-02	ci right 3.194239e-02	k: 1520	n:50000
KS ci ratio: 1.052689e-02	ci left: 7.310880e-01	ci right 7.388448e-01	k: 36749	n:50000
XBP1   50000 perm   11 sec   (4548 perm/sec)   p_kst 7.349800e-01   p_cons 3.040000e-02   p_joint 1.377600e-01

Outputting figure to mutsig2_images.part000000000191/XBP1.3_1177_50000_0.73498_0.0304_0.13776.png
                gene_name: XBP1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.030 
      ci_cons_bounds_left: 0.029 
     ci_cons_bounds_right: 0.032 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 58 percent done.
WDR89
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.901255e-03	ci left: 9.820981e-01	ci right 9.870138e-01	k: 9847	n:10000
KS ci ratio: 4.997344e-03	ci left: 9.814524e-01	ci right 9.864599e-01	k: 9841	n:10000
WDR89   10000 perm   2 sec   (6570 perm/sec)   p_kst 9.841000e-01   p_cons 9.847000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WDR89.2_1168_10000_0.9841_0.9847_1.png
                gene_name: WDR89
               theta_stop: 0.0050 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 60 percent done.
WDR90
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.481309e-02	ci left: 2.072778e-01	ci right 2.234884e-01	k: 2153	n:10000
Cons ci ratio: 9.134967e-02	ci left: 1.483504e-01	ci right 1.626509e-01	k: 1554	n:10000
KS ci ratio: 8.098835e-02	ci left: 1.820569e-01	ci right 1.975242e-01	k: 1897	n:10000
WDR90   10000 perm   2 sec   (4206 perm/sec)   p_kst 1.897000e-01   p_cons 1.554000e-01   p_joint 2.153000e-01

Outputting figure to mutsig2_images.part000000000191/WDR90.2_5411_10000_0.1897_0.1554_0.2153.png
                gene_name: WDR90
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 62 percent done.
WEE2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.932758e-02	ci left: 4.884519e-01	ci right 5.081491e-01	k: 4983	n:10000
KS ci ratio: 3.830297e-02	ci left: 5.016506e-01	ci right 5.213427e-01	k: 5115	n:10000
WEE2   10000 perm   2 sec   (6327 perm/sec)   p_kst 5.115000e-01   p_cons 4.983000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WEE2.2_1752_10000_0.5115_0.4983_1.png
                gene_name: WEE2
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 64 percent done.
WFDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.456935e-01	ci left: 6.256264e-02	ci right 7.249110e-02	k: 674	n:10000
Cons ci ratio: 1.046689e-01	ci left: 1.165255e-01	ci right 1.294950e-01	k: 1229	n:10000
KS ci ratio: 6.881274e-02	ci left: 2.364969e-01	ci right 2.534520e-01	k: 2449	n:10000
WFDC1   10000 perm   2 sec   (6406 perm/sec)   p_kst 2.449000e-01   p_cons 1.229000e-01   p_joint 6.740000e-02

Joint ci ratio: 6.014120e-02	ci left: 1.699047e-01	ci right 1.804899e-01	k: 3503	n:20000
Cons ci ratio: 7.360460e-02	ci left: 1.196098e-01	ci right 1.287997e-01	k: 2483	n:20000
KS ci ratio: 4.903617e-02	ci left: 2.361762e-01	ci right 2.480988e-01	k: 4842	n:20000
WFDC1   20000 perm   4 sec   (5495 perm/sec)   p_kst 2.421000e-01   p_cons 1.241500e-01   p_joint 1.751500e-01

Outputting figure to mutsig2_images.part000000000191/WFDC1.2_687_20000_0.2421_0.12415_0.17515.png
                gene_name: WFDC1
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 66 percent done.
WFDC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.370625e-02	ci left: 7.234042e-01	ci right 7.408604e-01	k: 7322	n:10000
KS ci ratio: 3.797060e-03	ci left: 9.887288e-01	ci right 9.925772e-01	k: 9908	n:10000
WFDC3   10000 perm   2 sec   (5931 perm/sec)   p_kst 9.908000e-01   p_cons 7.322000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WFDC3.2_720_10000_0.9908_0.7322_1.png
                gene_name: WFDC3
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
WFDC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.357589e-01	ci left: 2.372311e-02	ci right 3.015646e-02	k: 268	n:10000
Cons ci ratio: 1.053537e-01	ci left: 1.151575e-01	ci right 1.280638e-01	k: 1215	n:10000
KS ci ratio: 1.271427e-01	ci left: 8.125571e-02	ci right 9.238637e-02	k: 867	n:10000
WFDC8   10000 perm   1 sec   (6706 perm/sec)   p_kst 8.670000e-02   p_cons 1.215000e-01   p_joint 2.680000e-02

Joint ci ratio: 1.618303e-01	ci left: 2.618962e-02	ci right 3.084880e-02	k: 569	n:20000
Cons ci ratio: 7.437585e-02	ci left: 1.173959e-01	ci right 1.265143e-01	k: 2438	n:20000
KS ci ratio: 8.993368e-02	ci left: 8.283542e-02	ci right 9.068521e-02	k: 1734	n:20000
WFDC8   20000 perm   3 sec   (5727 perm/sec)   p_kst 8.670000e-02   p_cons 1.219000e-01   p_joint 2.845000e-02

Joint ci ratio: 1.242743e-01	ci left: 3.010182e-02	ci right 3.412279e-02	k: 962	n:30000
Cons ci ratio: 6.110426e-02	ci left: 1.169351e-01	ci right 1.243386e-01	k: 3618	n:30000
KS ci ratio: 7.308563e-02	ci left: 8.429313e-02	ci right 9.072035e-02	k: 2624	n:30000
WFDC8   30000 perm   6 sec   (5442 perm/sec)   p_kst 8.746667e-02   p_cons 1.206000e-01   p_joint 3.206667e-02

Joint ci ratio: 1.120278e-01	ci left: 2.803379e-02	ci right 3.138495e-02	k: 1187	n:40000
Cons ci ratio: 5.280813e-02	ci left: 1.178685e-01	ci right 1.242866e-01	k: 4842	n:40000
KS ci ratio: 6.334382e-02	ci left: 8.460057e-02	ci right 9.015950e-02	k: 3494	n:40000
WFDC8   40000 perm   8 sec   (5245 perm/sec)   p_kst 8.735000e-02   p_cons 1.210500e-01   p_joint 2.967500e-02

Joint ci ratio: 1.043670e-01	ci left: 2.600609e-02	ci right 2.888912e-02	k: 1371	n:50000
Cons ci ratio: 4.727644e-02	ci left: 1.180149e-01	ci right 1.237492e-01	k: 6043	n:50000
KS ci ratio: 5.687616e-02	ci left: 8.428704e-02	ci right 8.924106e-02	k: 4337	n:50000
WFDC8   50000 perm   10 sec   (5036 perm/sec)   p_kst 8.674000e-02   p_cons 1.208600e-01   p_joint 2.742000e-02

Joint ci ratio: 9.301514e-02	ci left: 2.741113e-02	ci right 3.010138e-02	k: 1724	n:60000
Cons ci ratio: 4.335750e-02	ci left: 1.172943e-01	ci right 1.225092e-01	k: 7193	n:60000
KS ci ratio: 5.212155e-02	ci left: 8.390014e-02	ci right 8.840665e-02	k: 5168	n:60000
WFDC8   60000 perm   12 sec   (4919 perm/sec)   p_kst 8.613333e-02   p_cons 1.198833e-01   p_joint 2.873333e-02

Outputting figure to mutsig2_images.part000000000191/WFDC8.2_750_60000_0.086133_0.11988_0.028733.png
                gene_name: WFDC8
               theta_stop: 0.093 
                    nperm: 60000 
                     p_ks: 0.086 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.029 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.030 

Current progress: 70 percent done.
WIF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.825701e-02	ci left: 5.022507e-01	ci right 5.219422e-01	k: 5121	n:10000
KS ci ratio: 1.523591e-02	ci left: 8.620253e-01	ci right 8.753591e-01	k: 8688	n:10000
WIF1   10000 perm   2 sec   (6151 perm/sec)   p_kst 8.688000e-01   p_cons 5.121000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WIF1.2_1180_10000_0.8688_0.5121_1.png
                gene_name: WIF1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 72 percent done.
WIPF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.790536e-02	ci left: 8.198482e-01	ci right 8.347606e-01	k: 8274	n:10000
KS ci ratio: 2.118833e-02	ci left: 7.655723e-01	ci right 7.820679e-01	k: 7739	n:10000
WIPF2   10000 perm   2 sec   (5915 perm/sec)   p_kst 7.739000e-01   p_cons 8.274000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WIPF2.2_1351_10000_0.7739_0.8274_1.png
                gene_name: WIPF2
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
WIPF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.484857e-02	ci left: 5.487016e-01	ci right 5.682643e-01	k: 5585	n:10000
KS ci ratio: 1.797425e-02	ci left: 8.187299e-01	ci right 8.336795e-01	k: 8263	n:10000
WIPF3   10000 perm   2 sec   (5648 perm/sec)   p_kst 8.263000e-01   p_cons 5.585000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WIPF3.2_1480_10000_0.8263_0.5585_1.png
                gene_name: WIPF3
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 75 percent done.
WIPI1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.194651e-02	ci left: 2.205969e-01	ci right 2.371614e-01	k: 2288	n:10000
Cons ci ratio: 1.030047e-01	ci left: 1.199465e-01	ci right 1.330719e-01	k: 1264	n:10000
KS ci ratio: 4.334736e-02	ci left: 4.400155e-01	ci right 4.596137e-01	k: 4498	n:10000
WIPI1   10000 perm   2 sec   (6248 perm/sec)   p_kst 4.498000e-01   p_cons 1.264000e-01   p_joint 2.288000e-01

Joint ci ratio: 1.510645e-02	ci left: 7.651124e-01	ci right 7.768087e-01	k: 15420	n:20000
Cons ci ratio: 6.679640e-02	ci left: 1.419711e-01	ci right 1.518318e-01	k: 2937	n:20000
KS ci ratio: 3.046565e-02	ci left: 4.459336e-01	ci right 4.597801e-01	k: 9057	n:20000
WIPI1   20000 perm   4 sec   (5370 perm/sec)   p_kst 4.528500e-01   p_cons 1.468500e-01   p_joint 7.710000e-01

Outputting figure to mutsig2_images.part000000000191/WIPI1.2_1393_20000_0.45285_0.14685_0.771.png
                gene_name: WIPI1
               theta_stop: 0.067 
                    nperm: 20000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 77 percent done.
WIPI2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.261589e-02	ci left: 9.003168e-01	ci right 9.118454e-01	k: 9062	n:10000
KS ci ratio: 2.240852e-02	ci left: 7.451322e-01	ci right 7.621198e-01	k: 7537	n:10000
WIPI2   10000 perm   2 sec   (5629 perm/sec)   p_kst 7.537000e-01   p_cons 9.062000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WIPI2.2_1451_10000_0.7537_0.9062_1.png
                gene_name: WIPI2
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
WISP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.915495e-02	ci left: 4.906512e-01	ci right 5.103485e-01	k: 5005	n:10000
Cons ci ratio: 2.483886e-02	ci left: 7.045272e-01	ci right 7.223483e-01	k: 7135	n:10000
KS ci ratio: 4.354051e-02	ci left: 4.378206e-01	ci right 4.574099e-01	k: 4476	n:10000
WISP1   10000 perm   2 sec   (5899 perm/sec)   p_kst 4.476000e-01   p_cons 7.135000e-01   p_joint 5.005000e-01

Outputting figure to mutsig2_images.part000000000191/WISP1.2_1124_10000_0.4476_0.7135_0.5005.png
                gene_name: WISP1
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 81 percent done.
WNK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.129120e-02	ci left: 7.638510e-01	ci right 7.803902e-01	k: 7722	n:10000
Cons ci ratio: 1.928796e-02	ci left: 7.971977e-01	ci right 8.128242e-01	k: 8051	n:10000
KS ci ratio: 5.114064e-02	ci left: 3.605262e-01	ci right 3.795496e-01	k: 3700	n:10000
WNK4   10000 perm   2 sec   (4917 perm/sec)   p_kst 3.700000e-01   p_cons 8.051000e-01   p_joint 7.722000e-01

Outputting figure to mutsig2_images.part000000000191/WNK4.2_3808_10000_0.37_0.8051_0.7722.png
                gene_name: WNK4
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 83 percent done.
WNT16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.624658e-02	ci left: 4.083079e-01	ci right 4.277399e-01	k: 4180	n:10000
Cons ci ratio: 5.852375e-02	ci left: 3.005450e-01	ci right 3.187660e-01	k: 3096	n:10000
KS ci ratio: 3.340863e-02	ci left: 5.694520e-01	ci right 5.889019e-01	k: 5792	n:10000
WNT16   10000 perm   2 sec   (6118 perm/sec)   p_kst 5.792000e-01   p_cons 3.096000e-01   p_joint 4.180000e-01

Outputting figure to mutsig2_images.part000000000191/WNT16.2_1183_10000_0.5792_0.3096_0.418.png
                gene_name: WNT16
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 85 percent done.
WNT7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.584476e-02	ci left: 8.526363e-01	ci right 8.663535e-01	k: 8596	n:10000
KS ci ratio: 1.806805e-02	ci left: 8.172052e-01	ci right 8.322052e-01	k: 8248	n:10000
WNT7A   10000 perm   1 sec   (6849 perm/sec)   p_kst 8.248000e-01   p_cons 8.596000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WNT7A.2_1066_10000_0.8248_0.8596_1.png
                gene_name: WNT7A
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 87 percent done.
WNT7B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131927e-02	ci left: 9.177038e-01	ci right 9.282482e-01	k: 9231	n:10000
Cons ci ratio: 2.986464e-02	ci left: 6.231641e-01	ci right 6.421586e-01	k: 6327	n:10000
KS ci ratio: 2.177474e-02	ci left: 7.557537e-01	ci right 7.724921e-01	k: 7642	n:10000
WNT7B   10000 perm   2 sec   (6663 perm/sec)   p_kst 7.642000e-01   p_cons 6.327000e-01   p_joint 9.231000e-01

Outputting figure to mutsig2_images.part000000000191/WNT7B.2_1066_10000_0.7642_0.6327_0.9231.png
                gene_name: WNT7B
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 89 percent done.
WNT8A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.968114e-02	ci left: 3.740545e-01	ci right 3.932134e-01	k: 3836	n:10000
KS ci ratio: 1.510425e-01	ci left: 5.831582e-02	ci right 6.794061e-02	k: 630	n:10000
WNT8A   10000 perm   1 sec   (6778 perm/sec)   p_kst 6.300000e-02   p_cons 3.836000e-01   p_joint 1

Joint ci ratio: 1.619308e-02	ci left: 7.394533e-01	ci right 7.515753e-01	k: 14911	n:20000
Cons ci ratio: 3.548131e-02	ci left: 3.722196e-01	ci right 3.857156e-01	k: 7579	n:20000
KS ci ratio: 1.099059e-01	ci left: 5.650427e-02	ci right 6.312442e-02	k: 1195	n:20000
WNT8A   20000 perm   3 sec   (5758 perm/sec)   p_kst 5.975000e-02   p_cons 3.789500e-01   p_joint 7.455500e-01

Joint ci ratio: 7.154321e-02	ci left: 8.770292e-02	ci right 9.424321e-02	k: 2728	n:30000
Cons ci ratio: 2.893343e-02	ci left: 3.740705e-01	ci right 3.850861e-01	k: 11387	n:30000
KS ci ratio: 8.908016e-02	ci left: 5.792607e-02	ci right 6.335940e-02	k: 1818	n:30000
WNT8A   30000 perm   6 sec   (5408 perm/sec)   p_kst 6.060000e-02   p_cons 3.795667e-01   p_joint 9.093333e-02

Outputting figure to mutsig2_images.part000000000191/WNT8A.2_1080_30000_0.0606_0.37957_0.090933.png
                gene_name: WNT8A
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.094 

Current progress: 91 percent done.
WNT9A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.031013e-02	ci left: 1.846161e-01	ci right 2.001635e-01	k: 1923	n:10000
Cons ci ratio: 5.680355e-02	ci left: 3.133413e-01	ci right 3.317622e-01	k: 3225	n:10000
KS ci ratio: 1.543320e-01	ci left: 5.590576e-02	ci right 6.535220e-02	k: 605	n:10000
WNT9A   10000 perm   2 sec   (6597 perm/sec)   p_kst 6.050000e-02   p_cons 3.225000e-01   p_joint 1.923000e-01

Joint ci ratio: 7.076969e-02	ci left: 1.282732e-01	ci right 1.377338e-01	k: 2659	n:20000
Cons ci ratio: 4.044354e-02	ci left: 3.130891e-01	ci right 3.260634e-01	k: 6391	n:20000
KS ci ratio: 1.102988e-01	ci left: 5.611465e-02	ci right 6.271417e-02	k: 1187	n:20000
WNT9A   20000 perm   3 sec   (5730 perm/sec)   p_kst 5.935000e-02   p_cons 3.195500e-01   p_joint 1.329500e-01

Joint ci ratio: 4.759173e-02	ci left: 1.800256e-01	ci right 1.888356e-01	k: 5532	n:30000
Cons ci ratio: 3.316428e-02	ci left: 3.124327e-01	ci right 3.230026e-01	k: 9531	n:30000
KS ci ratio: 9.000558e-02	ci left: 5.678398e-02	ci right 6.216840e-02	k: 1783	n:30000
WNT9A   30000 perm   6 sec   (5383 perm/sec)   p_kst 5.943333e-02   p_cons 3.177000e-01   p_joint 1.844000e-01

Outputting figure to mutsig2_images.part000000000191/WNT9A.2_1114_30000_0.059433_0.3177_0.1844.png
                gene_name: WNT9A
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 92 percent done.
WNT9B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.711256e-02	ci left: 3.993415e-01	ci right 4.187115e-01	k: 4090	n:10000
KS ci ratio: 3.129460e-02	ci left: 6.010623e-01	ci right 6.202732e-01	k: 6107	n:10000
WNT9B   10000 perm   2 sec   (6364 perm/sec)   p_kst 6.107000e-01   p_cons 4.090000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000191/WNT9B.2_1090_10000_0.6107_0.409_1.png
                gene_name: WNT9B
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
WTAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.849801e-02	ci left: 2.381767e-01	ci right 2.551711e-01	k: 2466	n:10000
Cons ci ratio: 1.496550e-01	ci left: 5.937693e-02	ci right 6.907883e-02	k: 641	n:10000
KS ci ratio: 6.849801e-02	ci left: 2.381767e-01	ci right 2.551711e-01	k: 2466	n:10000
WTAP   10000 perm   2 sec   (6356 perm/sec)   p_kst 2.466000e-01   p_cons 6.410000e-02   p_joint 2.466000e-01

Joint ci ratio: 1.076271e-01	ci left: 5.884288e-02	ci right 6.558509e-02	k: 1243	n:20000
Cons ci ratio: 1.076271e-01	ci left: 5.884288e-02	ci right 6.558509e-02	k: 1243	n:20000
KS ci ratio: 4.792015e-02	ci left: 2.446553e-01	ci right 2.567173e-01	k: 5013	n:20000
WTAP   20000 perm   4 sec   (5546 perm/sec)   p_kst 2.506500e-01   p_cons 6.215000e-02   p_joint 6.215000e-02

Joint ci ratio: 8.782760e-02	ci left: 5.952549e-02	ci right 6.502633e-02	k: 1867	n:30000
Cons ci ratio: 8.782760e-02	ci left: 5.952549e-02	ci right 6.502633e-02	k: 1867	n:30000
KS ci ratio: 3.921024e-02	ci left: 2.449754e-01	ci right 2.548064e-01	k: 7496	n:30000
WTAP   30000 perm   6 sec   (5347 perm/sec)   p_kst 2.498667e-01   p_cons 6.223333e-02   p_joint 6.223333e-02

Outputting figure to mutsig2_images.part000000000191/WTAP.2_1223_30000_0.24987_0.062233_0.062233.png
                gene_name: WTAP
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.060 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.062 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.065 

Current progress: 96 percent done.
WWTR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.767188e-02	ci left: 5.099533e-01	ci right 5.296352e-01	k: 5198	n:10000
Cons ci ratio: 2.776432e-02	ci left: 6.565580e-01	ci right 6.751452e-01	k: 6659	n:10000
KS ci ratio: 4.182965e-02	ci left: 4.576816e-01	ci right 4.773374e-01	k: 4675	n:10000
WWTR1   10000 perm   2 sec   (5656 perm/sec)   p_kst 4.675000e-01   p_cons 6.659000e-01   p_joint 5.198000e-01

Outputting figure to mutsig2_images.part000000000191/WWTR1.2_1227_10000_0.4675_0.6659_0.5198.png
                gene_name: WWTR1
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 98 percent done.
XAF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.544678e-01	ci left: 5.580941e-02	ci right 6.524862e-02	k: 604	n:10000
Cons ci ratio: 1.320333e-01	ci left: 7.562816e-02	ci right 8.641740e-02	k: 809	n:10000
KS ci ratio: 1.603324e-01	ci left: 5.186203e-02	ci right 6.099852e-02	k: 563	n:10000
XAF1   10000 perm   2 sec   (6383 perm/sec)   p_kst 5.630000e-02   p_cons 8.090000e-02   p_joint 6.040000e-02

Joint ci ratio: 1.131092e-01	ci left: 5.343714e-02	ci right 5.989251e-02	k: 1132	n:20000
Cons ci ratio: 8.713076e-02	ci left: 8.788185e-02	ci right 9.593725e-02	k: 1837	n:20000
KS ci ratio: 1.156184e-01	ci left: 5.119939e-02	ci right 5.753095e-02	k: 1086	n:20000
XAF1   20000 perm   4 sec   (5537 perm/sec)   p_kst 5.430000e-02   p_cons 9.185000e-02   p_joint 5.660000e-02

Joint ci ratio: 1.731349e-01	ci left: 1.534403e-02	ci right 1.828395e-02	k: 503	n:30000
Cons ci ratio: 7.173131e-02	ci left: 8.727661e-02	ci right 9.380293e-02	k: 2715	n:30000
KS ci ratio: 9.509857e-02	ci left: 5.104544e-02	ci right 5.617477e-02	k: 1607	n:30000
XAF1   30000 perm   6 sec   (5208 perm/sec)   p_kst 5.356667e-02   p_cons 9.050000e-02   p_joint 1.676667e-02

Joint ci ratio: 8.550099e-02	ci left: 4.778644e-02	ci right 5.207920e-02	k: 1996	n:40000
Cons ci ratio: 6.239008e-02	ci left: 8.701563e-02	ci right 9.264408e-02	k: 3592	n:40000
KS ci ratio: 8.280796e-02	ci left: 5.084903e-02	ci right 5.526614e-02	k: 2121	n:40000
XAF1   40000 perm   8 sec   (5031 perm/sec)   p_kst 5.302500e-02   p_cons 8.980000e-02   p_joint 4.990000e-02

Outputting figure to mutsig2_images.part000000000191/XAF1.2_934_40000_0.053025_0.0898_0.0499.png
                gene_name: XAF1
               theta_stop: 0.086 
                    nperm: 40000 
                     p_ks: 0.053 
        ci_ks_bounds_left: 0.051 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.090 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.093 
                  p_joint: 0.050 
     ci_joint_bounds_left: 0.048 
    ci_joint_bounds_right: 0.052 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000191
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 191 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1726>
Subject: Job 9894208: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1726>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000192> was used as the working directory.
Started at Sat Oct  6 00:36:04 2012
Results reported at Sat Oct  6 00:44:42 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000192.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000192.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 192  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000192.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    505.42 sec.
    Max Memory :      3660 MB
    Max Swap   :      5978 MB

    Max Processes  :         7
    Max Threads    :        72

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
192
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 192
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 192: processing genes 17220 - 17309
Calculating significance of each gene.
Using projection method.
17220	XDH	5.852227e-01
17221	XG	7.782542e-02
17222	XIAP	6.529570e-01
17223	XIRP1	9.627261e-02
17224	XIRP2	3.164273e-01
17225	XK	1
17226	XKR3	7.142653e-02
17227	XKR4	8.209965e-01
17228	XKR5	1
17229	XKR6	8.034711e-02
17230	XKR7	6.529647e-01
17231	XKR8	4.026228e-01
17232	XKR9	2.982558e-01
17233	XKRX	1.320134e-01
17234	XPA	6.113142e-01
17235	XPC	9.373248e-01
17236	XPNPEP1	6.206821e-01
17237	XPNPEP2	6.343443e-01
17238	XPNPEP3	5.759504e-01
17239	XPO1	9.025777e-01
17240	XPO4	6.678744e-01
17241	XPO5	9.964494e-01
17242	XPO6	9.213235e-01
17243	XPO7	9.899750e-01
17244	XPOT	5.858839e-01
17245	XPR1	8.352645e-02
17246	XRCC1	6.350336e-01
17247	XRCC2	7.638546e-03
17248	XRCC3	4.396418e-01
17249	XRCC4	4.754006e-02
17250	XRCC5	1.171114e-01
17251	XRCC6	7.506787e-01
17252	XRCC6BP1	7.099016e-01
17253	XRN1	1.625310e-01
17254	XRN2	3.134407e-01
17255	XRRA1	8.563579e-01
17256	XYLB	6.576256e-01
17257	XYLT1	7.000445e-01
17258	XYLT2	8.789102e-01
17259	YAF2	4.840730e-01
17260	YAP1	5.399624e-01
17261	YARS	6.032419e-01
17262	YARS2	1.926643e-01
17263	YBX1	1.731675e-01
17264	YBX2	3.534752e-01
17265	YDJC	1
17266	YEATS2	7.866862e-01
17267	YEATS4	1
17268	YES1	7.583347e-01
17269	YIF1A	1
17270	YIF1B	7.053882e-01
17271	YIPF1	1.433474e-01
17272	YIPF2	1
17273	YIPF3	4.770355e-01
17274	YIPF4	1
17275	YIPF5	2.649343e-01
17276	YIPF6	1.229064e-01
17277	YIPF7	3.808058e-01
17278	YJEFN3	1
17279	YKT6	6.966561e-01
17280	YLPM1	3.934063e-01
17281	YME1L1	1.299431e-01
17282	YOD1	7.287291e-01
17283	YPEL1	5.972786e-01
17284	YPEL2	4.539054e-01
17285	YPEL3	1
17286	YPEL4	1
17287	YPEL5	1
17288	YRDC	1
17289	YSK4	4.159639e-02
17290	YTHDC1	2.450180e-01
In gene YTHDC2 the following bins exceed PROBCAP:
    READ-AG-3594	categ 6	N = 4317    n = 1	mu =   1.72e-07
17291	YTHDC2	4.971276e-02
17292	YTHDF1	7.378960e-01
17293	YTHDF2	8.469188e-01
17294	YTHDF3	7.557524e-01
17295	YWHAB	3.298682e-01
17296	YWHAE	1.809935e-01
17297	YWHAG	1
17298	YWHAH	5.832908e-01
17299	YWHAQ	7.815106e-01
17300	YWHAZ	1
17301	YY1	9.227831e-01
17302	YY1AP1	3.978112e-01
17303	YY2	8.361130e-01
17304	ZACN	8.510673e-01
17305	ZADH2	4.607614e-01
17306	ZAK	7.173075e-01
17307	ZAN	8.387599e-01
17308	ZAP70	6.736768e-01
17309	ZAR1	1.170531e-02
Done

Running MutSig 2:
Scatter job 192: processing genes 17220 - 17309
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
XIRP2
Processing conservation and coverage...
81% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.346599e-02	ci left: 8.883137e-01	ci right 9.004554e-01	k: 8945	n:10000
Cons ci ratio: 1.045991e-02	ci left: 9.285426e-01	ci right 9.384031e-01	k: 9336	n:10000
KS ci ratio: 2.017470e-02	ci left: 7.824912e-01	ci right 7.985392e-01	k: 7906	n:10000
XIRP2   10000 perm   3 sec   (3017 perm/sec)   p_kst 7.906000e-01   p_cons 9.336000e-01   p_joint 8.945000e-01

Outputting figure to mutsig2_images.part000000000192/XIRP2.37_12236_10000_0.7906_0.9336_0.8945.png
                gene_name: XIRP2
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 2 percent done.
YSK4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.834860e-02	ci left: 8.126320e-01	ci right 8.277809e-01	k: 8203	n:10000
Cons ci ratio: 2.361561e-02	ci left: 7.249193e-01	ci right 7.423444e-01	k: 7337	n:10000
KS ci ratio: 2.246282e-02	ci left: 7.442221e-01	ci right 7.612304e-01	k: 7528	n:10000
YSK4   10000 perm   2 sec   (4693 perm/sec)   p_kst 7.528000e-01   p_cons 7.337000e-01   p_joint 8.203000e-01

Outputting figure to mutsig2_images.part000000000192/YSK4.16_4027_10000_0.7528_0.7337_0.8203.png
                gene_name: YSK4
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 3 percent done.
YTHDC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.358403e-02	ci left: 2.665620e-01	ci right 2.841691e-01	k: 2753	n:10000
Cons ci ratio: 5.120650e-02	ci left: 3.599296e-01	ci right 3.789466e-01	k: 3694	n:10000
KS ci ratio: 7.198729e-02	ci left: 2.203995e-01	ci right 2.369589e-01	k: 2286	n:10000
YTHDC2   10000 perm   2 sec   (4522 perm/sec)   p_kst 2.286000e-01   p_cons 3.694000e-01   p_joint 2.753000e-01

Outputting figure to mutsig2_images.part000000000192/YTHDC2.14_4409_10000_0.2286_0.3694_0.2753.png
                gene_name: YTHDC2
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 5 percent done.
ZAN
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.842942e-02	ci left: 8.113112e-01	ci right 8.265025e-01	k: 8190	n:10000
Cons ci ratio: 2.470529e-02	ci left: 7.067471e-01	ci right 7.245272e-01	k: 7157	n:10000
KS ci ratio: 3.367660e-02	ci left: 5.655412e-01	ci right 5.850149e-01	k: 5753	n:10000
ZAN   10000 perm   3 sec   (3881 perm/sec)   p_kst 5.753000e-01   p_cons 7.157000e-01   p_joint 8.190000e-01

Outputting figure to mutsig2_images.part000000000192/ZAN.14_8691_10000_0.5753_0.7157_0.819.png
                gene_name: ZAN
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 7 percent done.
XIRP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.162196e-02	ci left: 2.221762e-01	ci right 2.387810e-01	k: 2304	n:10000
Cons ci ratio: 2.846609e-02	ci left: 6.452870e-01	ci right 6.640228e-01	k: 6547	n:10000
KS ci ratio: 8.882633e-02	ci left: 1.557113e-01	ci right 1.702856e-01	k: 1629	n:10000
XIRP1   10000 perm   2 sec   (4582 perm/sec)   p_kst 1.629000e-01   p_cons 6.547000e-01   p_joint 2.304000e-01

Outputting figure to mutsig2_images.part000000000192/XIRP1.13_5536_10000_0.1629_0.6547_0.2304.png
                gene_name: XIRP1
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 8 percent done.
XPR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.239042e-02	ci left: 7.454356e-01	ci right 7.624162e-01	k: 7540	n:10000
KS ci ratio: 1.644352e-02	ci left: 8.432573e-01	ci right 8.573380e-01	k: 8504	n:10000
XPR1   10000 perm   2 sec   (5675 perm/sec)   p_kst 8.504000e-01   p_cons 7.540000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/XPR1.11_2151_10000_0.8504_0.754_1.png
                gene_name: XPR1
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
YLPM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.912193e-02	ci left: 7.999380e-01	ci right 8.154824e-01	k: 8078	n:10000
Cons ci ratio: 4.951351e-02	ci left: 3.756466e-01	ci right 3.948203e-01	k: 3852	n:10000
KS ci ratio: 1.550197e-02	ci left: 8.579419e-01	ci right 8.714449e-01	k: 8648	n:10000
YLPM1   10000 perm   2 sec   (4333 perm/sec)   p_kst 8.648000e-01   p_cons 3.852000e-01   p_joint 8.078000e-01

Outputting figure to mutsig2_images.part000000000192/YLPM1.11_6521_10000_0.8648_0.3852_0.8078.png
                gene_name: YLPM1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 12 percent done.
XRN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.866511e-02	ci left: 8.074513e-01	ci right 8.227647e-01	k: 8152	n:10000
Cons ci ratio: 3.764171e-02	ci left: 5.103535e-01	ci right 5.300347e-01	k: 5202	n:10000
KS ci ratio: 2.648848e-02	ci left: 6.773041e-01	ci right 6.955872e-01	k: 6865	n:10000
XRN1   10000 perm   2 sec   (4688 perm/sec)   p_kst 6.865000e-01   p_cons 5.202000e-01   p_joint 8.152000e-01

Outputting figure to mutsig2_images.part000000000192/XRN1.8_5289_10000_0.6865_0.5202_0.8152.png
                gene_name: XRN1
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 14 percent done.
XRN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.717362e-02	ci left: 8.316480e-01	ci right 8.461540e-01	k: 8390	n:10000
Cons ci ratio: 2.663624e-02	ci left: 6.748860e-01	ci right 6.932067e-01	k: 6841	n:10000
KS ci ratio: 3.309443e-02	ci left: 5.740655e-01	ci right 5.934856e-01	k: 5838	n:10000
XRN2   10000 perm   2 sec   (5527 perm/sec)   p_kst 5.838000e-01   p_cons 6.841000e-01   p_joint 8.390000e-01

Outputting figure to mutsig2_images.part000000000192/XRN2.8_2973_10000_0.5838_0.6841_0.839.png
                gene_name: XRN2
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.85 

Current progress: 15 percent done.
YTHDC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.793285e-01	ci left: 4.149837e-02	ci right 4.976893e-02	k: 455	n:10000
Cons ci ratio: 4.647540e-02	ci left: 4.059166e-01	ci right 4.253326e-01	k: 4156	n:10000
KS ci ratio: 2.305278e-01	ci left: 2.485465e-02	ci right 3.142409e-02	k: 280	n:10000
YTHDC1   10000 perm   2 sec   (6083 perm/sec)   p_kst 2.800000e-02   p_cons 4.156000e-01   p_joint 4.550000e-02

Joint ci ratio: 1.215897e-01	ci left: 4.638886e-02	ci right 5.244300e-02	k: 987	n:20000
Cons ci ratio: 3.287964e-02	ci left: 4.085581e-01	ci right 4.222665e-01	k: 8308	n:20000
KS ci ratio: 1.622704e-01	ci left: 2.604555e-02	ci right 3.069292e-02	k: 566	n:20000
YTHDC1   20000 perm   4 sec   (5448 perm/sec)   p_kst 2.830000e-02   p_cons 4.154000e-01   p_joint 4.935000e-02

Joint ci ratio: 8.892414e-02	ci left: 5.812189e-02	ci right 6.356354e-02	k: 1824	n:30000
Cons ci ratio: 2.684879e-02	ci left: 4.097821e-01	ci right 4.209676e-01	k: 12461	n:30000
KS ci ratio: 1.312683e-01	ci left: 2.696883e-02	ci right 3.078980e-02	k: 865	n:30000
YTHDC1   30000 perm   6 sec   (5246 perm/sec)   p_kst 2.883333e-02   p_cons 4.153667e-01   p_joint 6.080000e-02

Joint ci ratio: 7.274798e-02	ci left: 6.520778e-02	ci right 7.015521e-02	k: 2706	n:40000
Cons ci ratio: 2.376795e-02	ci left: 3.999344e-01	ci right 4.095795e-01	k: 16190	n:40000
KS ci ratio: 1.113057e-01	ci left: 2.839861e-02	ci right 3.177007e-02	k: 1202	n:40000
YTHDC1   40000 perm   8 sec   (5032 perm/sec)   p_kst 3.005000e-02   p_cons 4.047500e-01   p_joint 6.765000e-02

Joint ci ratio: 5.797319e-02	ci left: 8.134600e-02	ci right 8.622245e-02	k: 4188	n:50000
Cons ci ratio: 2.123378e-02	ci left: 4.010123e-01	ci right 4.096387e-01	k: 20266	n:50000
KS ci ratio: 9.937633e-02	ci left: 2.867823e-02	ci right 3.169664e-02	k: 1508	n:50000
YTHDC1   50000 perm   10 sec   (4917 perm/sec)   p_kst 3.016000e-02   p_cons 4.053200e-01   p_joint 8.376000e-02

Outputting figure to mutsig2_images.part000000000192/YTHDC1.8_2252_50000_0.03016_0.40532_0.08376.png
                gene_name: YTHDC1
               theta_stop: 0.099 
                    nperm: 50000 
                     p_ks: 0.030 
        ci_ks_bounds_left: 0.029 
       ci_ks_bounds_right: 0.032 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.086 

Current progress: 17 percent done.
XDH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.718083e-02	ci left: 3.986443e-01	ci right 4.180092e-01	k: 4083	n:10000
Cons ci ratio: 8.531708e-02	ci left: 1.668119e-01	ci right 1.817783e-01	k: 1742	n:10000
KS ci ratio: 2.825238e-02	ci left: 6.487080e-01	ci right 6.673999e-01	k: 6581	n:10000
XDH   10000 perm   2 sec   (5136 perm/sec)   p_kst 6.581000e-01   p_cons 1.742000e-01   p_joint 4.083000e-01

Outputting figure to mutsig2_images.part000000000192/XDH.7_4146_10000_0.6581_0.1742_0.4083.png
                gene_name: XDH
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 19 percent done.
XPO4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.917845e-02	ci left: 4.903513e-01	ci right 5.100486e-01	k: 5002	n:10000
KS ci ratio: 9.056855e-03	ci left: 9.449215e-01	ci right 9.536144e-01	k: 9494	n:10000
XPO4   10000 perm   2 sec   (5130 perm/sec)   p_kst 9.494000e-01   p_cons 5.002000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/XPO4.6_3548_10000_0.9494_0.5002_1.png
                gene_name: XPO4
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
XPOT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.656849e-02	ci left: 6.759943e-01	ci right 6.942978e-01	k: 6852	n:10000
Cons ci ratio: 5.896462e-02	ci left: 2.973720e-01	ci right 3.155408e-01	k: 3064	n:10000
KS ci ratio: 3.406402e-02	ci left: 5.599267e-01	ci right 5.794327e-01	k: 5697	n:10000
XPOT   10000 perm   2 sec   (5381 perm/sec)   p_kst 5.697000e-01   p_cons 3.064000e-01   p_joint 6.852000e-01

Outputting figure to mutsig2_images.part000000000192/XPOT.6_2985_10000_0.5697_0.3064_0.6852.png
                gene_name: XPOT
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 22 percent done.
XRCC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.076980e-02	ci left: 3.639075e-01	ci right 3.829663e-01	k: 3734	n:10000
Cons ci ratio: 1.068087e-01	ci left: 1.123248e-01	ci right 1.250982e-01	k: 1186	n:10000
KS ci ratio: 1.523591e-02	ci left: 8.620253e-01	ci right 8.753591e-01	k: 8688	n:10000
XRCC5   10000 perm   2 sec   (5951 perm/sec)   p_kst 8.688000e-01   p_cons 1.186000e-01   p_joint 3.734000e-01

Joint ci ratio: 2.822275e-02	ci left: 4.839984e-01	ci right 4.979043e-01	k: 9819	n:20000
Cons ci ratio: 7.367235e-02	ci left: 1.194130e-01	ci right 1.285966e-01	k: 2479	n:20000
KS ci ratio: 9.693677e-03	ci left: 8.866499e-01	ci right 8.953361e-01	k: 17821	n:20000
XRCC5   20000 perm   4 sec   (5346 perm/sec)   p_kst 8.910500e-01   p_cons 1.239500e-01   p_joint 4.909500e-01

Outputting figure to mutsig2_images.part000000000192/XRCC5.6_2283_20000_0.89105_0.12395_0.49095.png
                gene_name: XRCC5
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 24 percent done.
XYLT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.402930e-02	ci left: 5.604280e-01	ci right 5.799311e-01	k: 5702	n:10000
Cons ci ratio: 1.284443e-02	ci left: 8.971340e-01	ci right 9.088300e-01	k: 9031	n:10000
KS ci ratio: 6.633841e-02	ci left: 2.501382e-01	ci right 2.674026e-01	k: 2587	n:10000
XYLT1   10000 perm   2 sec   (5637 perm/sec)   p_kst 2.587000e-01   p_cons 9.031000e-01   p_joint 5.702000e-01

Outputting figure to mutsig2_images.part000000000192/XYLT1.6_2928_10000_0.2587_0.9031_0.5702.png
                gene_name: XYLT1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 25 percent done.
YEATS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.329487e-02	ci left: 4.406142e-01	ci right 4.602147e-01	k: 4504	n:10000
Cons ci ratio: 6.062823e-02	ci left: 2.857752e-01	ci right 3.037445e-01	k: 2947	n:10000
KS ci ratio: 5.184997e-02	ci left: 3.541627e-01	ci right 3.731168e-01	k: 3636	n:10000
YEATS2   10000 perm   2 sec   (5295 perm/sec)   p_kst 3.636000e-01   p_cons 2.947000e-01   p_joint 4.504000e-01

Outputting figure to mutsig2_images.part000000000192/YEATS2.6_4389_10000_0.3636_0.2947_0.4504.png
                gene_name: YEATS2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 27 percent done.
YME1L1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.869303e-02	ci left: 6.416654e-01	ci right 6.604465e-01	k: 6511	n:10000
Cons ci ratio: 5.352662e-02	ci left: 3.396528e-01	ci right 3.584352e-01	k: 3490	n:10000
KS ci ratio: 1.136698e-02	ci left: 9.170854e-01	ci right 9.276670e-01	k: 9225	n:10000
YME1L1   10000 perm   2 sec   (5760 perm/sec)   p_kst 9.225000e-01   p_cons 3.490000e-01   p_joint 6.511000e-01

Outputting figure to mutsig2_images.part000000000192/YME1L1.6_2402_10000_0.9225_0.349_0.6511.png
                gene_name: YME1L1
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 29 percent done.
ZAK
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.443843e-02	ci left: 7.111875e-01	ci right 7.288841e-01	k: 7201	n:10000
Cons ci ratio: 1.695073e-02	ci left: 8.352108e-01	ci right 8.495891e-01	k: 8425	n:10000
KS ci ratio: 4.190533e-02	ci left: 4.567830e-01	ci right 4.764365e-01	k: 4666	n:10000
ZAK   10000 perm   2 sec   (5675 perm/sec)   p_kst 4.666000e-01   p_cons 8.425000e-01   p_joint 7.201000e-01

Outputting figure to mutsig2_images.part000000000192/ZAK.6_2864_10000_0.4666_0.8425_0.7201.png
                gene_name: ZAK
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 31 percent done.
XKR3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.884446e-02	ci left: 8.045063e-01	ci right 8.199113e-01	k: 8123	n:10000
Cons ci ratio: 5.942548e-02	ci left: 2.941004e-01	ci right 3.122144e-01	k: 3031	n:10000
KS ci ratio: 2.199211e-02	ci left: 7.521113e-01	ci right 7.689367e-01	k: 7606	n:10000
XKR3   10000 perm   1 sec   (6669 perm/sec)   p_kst 7.606000e-01   p_cons 3.031000e-01   p_joint 8.123000e-01

Outputting figure to mutsig2_images.part000000000192/XKR3.5_1392_10000_0.7606_0.3031_0.8123.png
                gene_name: XKR3
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 32 percent done.
XRCC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.050121e-02	ci left: 4.737614e-01	ci right 4.934481e-01	k: 4836	n:10000
Cons ci ratio: 2.411746e-02	ci left: 7.165376e-01	ci right 7.341309e-01	k: 7254	n:10000
KS ci ratio: 6.003574e-02	ci left: 2.898383e-01	ci right 3.078790e-01	k: 2988	n:10000
XRCC2   10000 perm   2 sec   (6656 perm/sec)   p_kst 2.988000e-01   p_cons 7.254000e-01   p_joint 4.836000e-01

Outputting figure to mutsig2_images.part000000000192/XRCC2.5_855_10000_0.2988_0.7254_0.4836.png
                gene_name: XRCC2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 34 percent done.
YY1AP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.323079e-02	ci left: 5.720595e-01	ci right 5.914928e-01	k: 5818	n:10000
Cons ci ratio: 5.684256e-02	ci left: 3.130436e-01	ci right 3.314601e-01	k: 3222	n:10000
KS ci ratio: 2.923175e-02	ci left: 6.331167e-01	ci right 6.520002e-01	k: 6426	n:10000
YY1AP1   10000 perm   2 sec   (5888 perm/sec)   p_kst 6.426000e-01   p_cons 3.222000e-01   p_joint 5.818000e-01

Outputting figure to mutsig2_images.part000000000192/YY1AP1.5_2495_10000_0.6426_0.3222_0.5818.png
                gene_name: YY1AP1
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 36 percent done.
XKR6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
Cons ci ratio: 1.658582e-01	ci left: 4.849762e-02	ci right 5.736510e-02	k: 528	n:10000
KS ci ratio: 1.389664e-01	ci left: 6.855690e-02	ci right 7.889307e-02	k: 736	n:10000
XKR6   10000 perm   2 sec   (6541 perm/sec)   p_kst 7.360000e-02   p_cons 5.280000e-02   p_joint 5.500000e-02

Joint ci ratio: 1.294313e-01	ci left: 4.100525e-02	ci right 4.672831e-02	k: 876	n:20000
Cons ci ratio: 1.208198e-01	ci left: 4.697153e-02	ci right 5.306014e-02	k: 999	n:20000
KS ci ratio: 1.006834e-01	ci left: 6.689222e-02	ci right 7.403327e-02	k: 1408	n:20000
XKR6   20000 perm   3 sec   (5815 perm/sec)   p_kst 7.040000e-02   p_cons 4.995000e-02   p_joint 4.380000e-02

Joint ci ratio: 7.841165e-02	ci left: 7.387676e-02	ci right 7.993881e-02	k: 2306	n:30000
Cons ci ratio: 9.673027e-02	ci left: 4.938411e-02	ci right 5.443644e-02	k: 1556	n:30000
KS ci ratio: 8.324029e-02	ci left: 6.596099e-02	ci right 7.172285e-02	k: 2064	n:30000
XKR6   30000 perm   5 sec   (5545 perm/sec)   p_kst 6.880000e-02   p_cons 5.186667e-02   p_joint 7.686667e-02

Outputting figure to mutsig2_images.part000000000192/XKR6.4_1938_30000_0.0688_0.051867_0.076867.png
                gene_name: XKR6
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.052 
      ci_cons_bounds_left: 0.049 
     ci_cons_bounds_right: 0.054 
                  p_joint: 0.077 
     ci_joint_bounds_left: 0.074 
    ci_joint_bounds_right: 0.080 

Current progress: 37 percent done.
XKRX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.478503e-02	ci left: 5.496035e-01	ci right 5.691619e-01	k: 5594	n:10000
Cons ci ratio: 4.409943e-02	ci left: 4.315362e-01	ci right 4.510980e-01	k: 4413	n:10000
KS ci ratio: 4.493169e-02	ci left: 4.223619e-01	ci right 4.418776e-01	k: 4321	n:10000
XKRX   10000 perm   2 sec   (6567 perm/sec)   p_kst 4.321000e-01   p_cons 4.413000e-01   p_joint 5.594000e-01

Outputting figure to mutsig2_images.part000000000192/XKRX.4_1362_10000_0.4321_0.4413_0.5594.png
                gene_name: XKRX
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 39 percent done.
XPNPEP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.872701e-02	ci left: 8.064357e-01	ci right 8.217809e-01	k: 8142	n:10000
Cons ci ratio: 5.307046e-02	ci left: 3.435278e-01	ci right 3.623579e-01	k: 3529	n:10000
KS ci ratio: 1.477164e-02	ci left: 8.690740e-01	ci right 8.821063e-01	k: 8757	n:10000
XPNPEP1   10000 perm   2 sec   (6481 perm/sec)   p_kst 8.757000e-01   p_cons 3.529000e-01   p_joint 8.142000e-01

Outputting figure to mutsig2_images.part000000000192/XPNPEP1.4_2085_10000_0.8757_0.3529_0.8142.png
                gene_name: XPNPEP1
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 41 percent done.
XPO6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.478420e-02	ci left: 7.054353e-01	ci right 7.232397e-01	k: 7144	n:10000
Cons ci ratio: 6.937534e-02	ci left: 2.335329e-01	ci right 2.504177e-01	k: 2419	n:10000
KS ci ratio: 2.410536e-02	ci left: 7.167396e-01	ci right 7.343289e-01	k: 7256	n:10000
XPO6   10000 perm   2 sec   (6012 perm/sec)   p_kst 7.256000e-01   p_cons 2.419000e-01   p_joint 7.144000e-01

Outputting figure to mutsig2_images.part000000000192/XPO6.4_3474_10000_0.7256_0.2419_0.7144.png
                gene_name: XPO6
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 42 percent done.
XRCC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.173722e-02	ci left: 5.943354e-01	ci right 6.136040e-01	k: 6040	n:10000
Cons ci ratio: 5.457943e-02	ci left: 3.309118e-01	ci right 3.495813e-01	k: 3402	n:10000
KS ci ratio: 4.074522e-02	ci left: 4.707644e-01	ci right 4.904469e-01	k: 4806	n:10000
XRCC4   10000 perm   2 sec   (6557 perm/sec)   p_kst 4.806000e-01   p_cons 3.402000e-01   p_joint 6.040000e-01

Outputting figure to mutsig2_images.part000000000192/XRCC4.4_1039_10000_0.4806_0.3402_0.604.png
                gene_name: XRCC4
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 44 percent done.
YARS2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.575879e-02	ci left: 6.892979e-01	ci right 7.073865e-01	k: 6984	n:10000
KS ci ratio: 2.113991e-02	ci left: 7.663823e-01	ci right 7.828574e-01	k: 7747	n:10000
YARS2   10000 perm   2 sec   (6568 perm/sec)   p_kst 7.747000e-01   p_cons 6.984000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/YARS2.4_1454_10000_0.7747_0.6984_1.png
                gene_name: YARS2
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
YIPF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.837970e-02	ci left: 8.121240e-01	ci right 8.272893e-01	k: 8198	n:10000
KS ci ratio: 3.266670e-03	ci left: 9.913872e-01	ci right 9.947158e-01	k: 9932	n:10000
YIPF1   10000 perm   1 sec   (6986 perm/sec)   p_kst 9.932000e-01   p_cons 8.198000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/YIPF1.4_953_10000_0.9932_0.8198_1.png
                gene_name: YIPF1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 47 percent done.
ZAP70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.399645e-02	ci left: 7.185570e-01	ci right 7.361104e-01	k: 7274	n:10000
KS ci ratio: 3.287702e-02	ci left: 5.772755e-01	ci right 5.966738e-01	k: 5870	n:10000
ZAP70   10000 perm   1 sec   (6708 perm/sec)   p_kst 5.870000e-01   p_cons 7.274000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/ZAP70.4_1908_10000_0.587_0.7274_1.png
                gene_name: ZAP70
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
XKR9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.720887e-02	ci left: 3.102655e-01	ci right 3.286398e-01	k: 3194	n:10000
Cons ci ratio: 5.424083e-02	ci left: 3.336927e-01	ci right 3.523989e-01	k: 3430	n:10000
KS ci ratio: 8.767228e-02	ci left: 1.592465e-01	ci right 1.739483e-01	k: 1665	n:10000
XKR9   10000 perm   1 sec   (7039 perm/sec)   p_kst 1.665000e-01   p_cons 3.430000e-01   p_joint 3.194000e-01

Outputting figure to mutsig2_images.part000000000192/XKR9.3_1134_10000_0.1665_0.343_0.3194.png
                gene_name: XKR9
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 51 percent done.
XPC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.651309e-02	ci left: 6.769010e-01	ci right 6.951905e-01	k: 6861	n:10000
KS ci ratio: 2.144844e-02	ci left: 7.612190e-01	ci right 7.778238e-01	k: 7696	n:10000
XPC   10000 perm   2 sec   (6165 perm/sec)   p_kst 7.696000e-01   p_cons 6.861000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/XPC.3_2890_10000_0.7696_0.6861_1.png
                gene_name: XPC
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
XPNPEP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.562896e-02	ci left: 3.224721e-01	ci right 3.410260e-01	k: 3317	n:10000
Cons ci ratio: 2.587498e-02	ci left: 6.873824e-01	ci right 7.055030e-01	k: 6965	n:10000
KS ci ratio: 7.126047e-02	ci left: 2.239532e-01	ci right 2.406030e-01	k: 2322	n:10000
XPNPEP2   10000 perm   1 sec   (6709 perm/sec)   p_kst 2.322000e-01   p_cons 6.965000e-01   p_joint 3.317000e-01

Outputting figure to mutsig2_images.part000000000192/XPNPEP2.3_2109_10000_0.2322_0.6965_0.3317.png
                gene_name: XPNPEP2
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 54 percent done.
XPNPEP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.742366e-02	ci left: 5.132551e-01	ci right 5.329314e-01	k: 5231	n:10000
Cons ci ratio: 2.447480e-02	ci left: 7.105819e-01	ci right 7.282901e-01	k: 7195	n:10000
KS ci ratio: 6.453735e-02	ci left: 2.607228e-01	ci right 2.782117e-01	k: 2694	n:10000
XPNPEP3   10000 perm   1 sec   (6859 perm/sec)   p_kst 2.694000e-01   p_cons 7.195000e-01   p_joint 5.231000e-01

Outputting figure to mutsig2_images.part000000000192/XPNPEP3.3_1564_10000_0.2694_0.7195_0.5231.png
                gene_name: XPNPEP3
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 56 percent done.
XRCC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.988129e-02	ci left: 3.721640e-01	ci right 3.913049e-01	k: 3817	n:10000
Cons ci ratio: 8.522827e-02	ci left: 1.671068e-01	ci right 1.820833e-01	k: 1745	n:10000
KS ci ratio: 5.339733e-02	ci left: 3.407457e-01	ci right 3.595416e-01	k: 3501	n:10000
XRCC6   10000 perm   1 sec   (7126 perm/sec)   p_kst 3.501000e-01   p_cons 1.745000e-01   p_joint 3.817000e-01

Outputting figure to mutsig2_images.part000000000192/XRCC6.3_1878_10000_0.3501_0.1745_0.3817.png
                gene_name: XRCC6
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 58 percent done.
YBX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.236599e-01	ci left: 2.646035e-02	ci right 3.321723e-02	k: 297	n:10000
Cons ci ratio: 1.214801e-01	ci left: 8.854359e-02	ci right 1.000940e-01	k: 942	n:10000
KS ci ratio: 4.136457e-01	ci left: 7.063669e-03	ci right 1.083076e-02	k: 88	n:10000
YBX1   10000 perm   1 sec   (7113 perm/sec)   p_kst 8.800000e-03   p_cons 9.420000e-02   p_joint 2.970000e-02

Joint ci ratio: 1.932871e-01	ci left: 1.819999e-02	ci right 2.214125e-02	k: 402	n:20000
Cons ci ratio: 8.445036e-02	ci left: 9.312830e-02	ci right 1.013892e-01	k: 1944	n:20000
KS ci ratio: 2.750958e-01	ci left: 8.667639e-03	ci right 1.147755e-02	k: 200	n:20000
YBX1   20000 perm   3 sec   (6302 perm/sec)   p_kst 1.000000e-02   p_cons 9.720000e-02   p_joint 2.010000e-02

Joint ci ratio: 1.539028e-01	ci left: 1.953562e-02	ci right 2.282469e-02	k: 634	n:30000
Cons ci ratio: 6.925006e-02	ci left: 9.314841e-02	ci right 9.986330e-02	k: 2894	n:30000
KS ci ratio: 2.302770e-01	ci left: 8.464779e-03	ci right 1.069841e-02	k: 286	n:30000
YBX1   30000 perm   5 sec   (5998 perm/sec)   p_kst 9.533333e-03   p_cons 9.646667e-02   p_joint 2.113333e-02

Joint ci ratio: 1.363314e-01	ci left: 1.886790e-02	ci right 2.165236e-02	k: 809	n:40000
Cons ci ratio: 5.964809e-02	ci left: 9.453580e-02	ci right 1.003728e-01	k: 3897	n:40000
KS ci ratio: 1.845774e-01	ci left: 1.012024e-02	ci right 1.220164e-02	k: 445	n:40000
YBX1   40000 perm   7 sec   (5710 perm/sec)   p_kst 1.112500e-02   p_cons 9.742500e-02   p_joint 2.022500e-02

Joint ci ratio: 9.318781e-02	ci left: 3.258498e-02	ci right 3.578940e-02	k: 1708	n:50000
Cons ci ratio: 5.361041e-02	ci left: 9.400436e-02	ci right 9.920259e-02	k: 4829	n:50000
KS ci ratio: 1.650166e-01	ci left: 1.023850e-02	ci right 1.209891e-02	k: 557	n:50000
YBX1   50000 perm   9 sec   (5538 perm/sec)   p_kst 1.114000e-02   p_cons 9.658000e-02   p_joint 3.416000e-02

Joint ci ratio: 8.794669e-02	ci left: 3.063869e-02	ci right 3.347347e-02	k: 1922	n:60000
Cons ci ratio: 4.879514e-02	ci left: 9.474199e-02	ci right 9.949706e-02	k: 5826	n:60000
KS ci ratio: 1.511651e-01	ci left: 1.024497e-02	ci right 1.193615e-02	k: 664	n:60000
YBX1   60000 perm   11 sec   (5422 perm/sec)   p_kst 1.106667e-02   p_cons 9.710000e-02   p_joint 3.203333e-02

Joint ci ratio: 8.542945e-02	ci left: 2.795116e-02	ci right 3.045950e-02	k: 2043	n:70000
Cons ci ratio: 4.494950e-02	ci left: 9.579291e-02	ci right 1.002119e-01	k: 6859	n:70000
KS ci ratio: 1.398456e-01	ci left: 1.032325e-02	ci right 1.188910e-02	k: 776	n:70000
YBX1   70000 perm   13 sec   (5311 perm/sec)   p_kst 1.108571e-02   p_cons 9.798571e-02   p_joint 2.918571e-02

Joint ci ratio: 8.657294e-02	ci left: 2.390466e-02	ci right 2.607998e-02	k: 1998	n:80000
Cons ci ratio: 4.193386e-02	ci left: 9.640626e-02	ci right 1.005479e-01	k: 7877	n:80000
KS ci ratio: 1.302218e-01	ci left: 1.047019e-02	ci right 1.194058e-02	k: 895	n:80000
YBX1   80000 perm   15 sec   (5199 perm/sec)   p_kst 1.118750e-02   p_cons 9.846250e-02   p_joint 2.497500e-02

Joint ci ratio: 8.316858e-02	ci left: 2.308610e-02	ci right 2.510029e-02	k: 2167	n:90000
Cons ci ratio: 3.946345e-02	ci left: 9.684692e-02	ci right 1.007568e-01	k: 8891	n:90000
KS ci ratio: 1.224065e-01	ci left: 1.057658e-02	ci right 1.196630e-02	k: 1013	n:90000
YBX1   90000 perm   18 sec   (5095 perm/sec)   p_kst 1.125556e-02   p_cons 9.878889e-02   p_joint 2.407778e-02

Joint ci ratio: 8.029298e-02	ci left: 2.234444e-02	ci right 2.422335e-02	k: 2327	n:100000
Cons ci ratio: 3.736285e-02	ci left: 9.730430e-02	ci right 1.010190e-01	k: 9915	n:100000
KS ci ratio: 1.160556e-01	ci left: 1.062495e-02	ci right 1.194363e-02	k: 1127	n:100000
YBX1   100000 perm   20 sec   (4994 perm/sec)   p_kst 1.127000e-02   p_cons 9.915000e-02   p_joint 2.327000e-02

Joint ci ratio: 8.129438e-02	ci left: 1.985781e-02	ci right 2.154941e-02	k: 2276	n:110000
Cons ci ratio: 3.565421e-02	ci left: 9.724109e-02	ci right 1.007801e-01	k: 10890	n:110000
KS ci ratio: 1.114201e-01	ci left: 1.050691e-02	ci right 1.175543e-02	k: 1223	n:110000
YBX1   110000 perm   22 sec   (4903 perm/sec)   p_kst 1.111818e-02   p_cons 9.900000e-02   p_joint 2.069091e-02

Joint ci ratio: 7.767397e-02	ci left: 1.997544e-02	ci right 2.159784e-02	k: 2493	n:120000
Cons ci ratio: 3.408395e-02	ci left: 9.758864e-02	ci right 1.009808e-01	k: 11913	n:120000
KS ci ratio: 1.068903e-01	ci left: 1.049055e-02	ci right 1.168325e-02	k: 1329	n:120000
YBX1   120000 perm   25 sec   (4810 perm/sec)   p_kst 1.107500e-02   p_cons 9.927500e-02   p_joint 2.077500e-02

Joint ci ratio: 7.922388e-02	ci left: 1.775178e-02	ci right 1.922366e-02	k: 2402	n:130000
Cons ci ratio: 3.272547e-02	ci left: 9.777103e-02	ci right 1.010315e-01	k: 12921	n:130000
KS ci ratio: 1.030531e-01	ci left: 1.044010e-02	ci right 1.158187e-02	k: 1430	n:130000
YBX1   130000 perm   28 sec   (4725 perm/sec)   p_kst 1.100000e-02   p_cons 9.939231e-02   p_joint 1.847692e-02

Joint ci ratio: 7.713303e-02	ci left: 1.741511e-02	ci right 1.881924e-02	k: 2535	n:140000
Cons ci ratio: 3.150114e-02	ci left: 9.802188e-02	ci right 1.011662e-01	k: 13942	n:140000
KS ci ratio: 9.914448e-02	ci left: 1.049505e-02	ci right 1.159677e-02	k: 1545	n:140000
YBX1   140000 perm   30 sec   (4642 perm/sec)   p_kst 1.103571e-02   p_cons 9.958571e-02   p_joint 1.810714e-02

Outputting figure to mutsig2_images.part000000000192/YBX1.3_1003_140000_0.011036_0.099586_0.018107.png
                gene_name: YBX1
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.011 
        ci_ks_bounds_left: 0.010 
       ci_ks_bounds_right: 0.012 
                   p_cons: 0.100 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.018 
     ci_joint_bounds_left: 0.017 
    ci_joint_bounds_right: 0.019 

Current progress: 59 percent done.
YBX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.554752e-01	ci left: 2.005779e-02	ci right 2.602453e-02	k: 229	n:10000
Cons ci ratio: 4.364913e-01	ci left: 6.259350e-03	ci right 9.836166e-03	k: 79	n:10000
KS ci ratio: 8.606556e-02	ci left: 1.643550e-01	ci right 1.792367e-01	k: 1717	n:10000
YBX2   10000 perm   1 sec   (7582 perm/sec)   p_kst 1.717000e-01   p_cons 7.900000e-03   p_joint 2.290000e-02

Joint ci ratio: 1.771369e-01	ci left: 2.177980e-02	ci right 2.606015e-02	k: 477	n:20000
Cons ci ratio: 2.860817e-01	ci left: 7.969983e-03	ci right 1.067556e-02	k: 185	n:20000
KS ci ratio: 6.082637e-02	ci left: 1.666940e-01	ci right 1.772015e-01	k: 3438	n:20000
YBX2   20000 perm   3 sec   (6688 perm/sec)   p_kst 1.719000e-01   p_cons 9.250000e-03   p_joint 2.385000e-02

Joint ci ratio: 1.069847e-01	ci left: 4.053731e-02	ci right 4.515175e-02	k: 1284	n:30000
Cons ci ratio: 2.306832e-01	ci left: 8.433355e-03	ci right 1.066317e-02	k: 285	n:30000
KS ci ratio: 4.996626e-02	ci left: 1.659628e-01	ci right 1.745011e-01	k: 5106	n:30000
YBX2   30000 perm   5 sec   (6337 perm/sec)   p_kst 1.702000e-01   p_cons 9.500000e-03   p_joint 4.280000e-02

Joint ci ratio: 1.387098e-01	ci left: 1.821570e-02	ci right 2.095467e-02	k: 782	n:40000
Cons ci ratio: 2.214143e-01	ci left: 6.914018e-03	ci right 8.658579e-03	k: 310	n:40000
KS ci ratio: 4.291689e-02	ci left: 1.688584e-01	ci right 1.762892e-01	k: 6902	n:40000
YBX2   40000 perm   7 sec   (6096 perm/sec)   p_kst 1.725500e-01   p_cons 7.750000e-03   p_joint 1.955000e-02

Joint ci ratio: 1.178183e-01	ci left: 2.038244e-02	ci right 2.295351e-02	k: 1082	n:50000
Cons ci ratio: 1.791943e-01	ci left: 8.630088e-03	ci right 1.034758e-02	k: 473	n:50000
KS ci ratio: 3.845006e-02	ci left: 1.687807e-01	ci right 1.754174e-01	k: 8604	n:50000
YBX2   50000 perm   8 sec   (5914 perm/sec)   p_kst 1.720800e-01   p_cons 9.460000e-03   p_joint 2.164000e-02

Joint ci ratio: 9.048117e-02	ci left: 2.895917e-02	ci right 3.171984e-02	k: 1819	n:60000
Cons ci ratio: 1.625461e-01	ci left: 8.819250e-03	ci right 1.039540e-02	k: 575	n:60000
KS ci ratio: 3.512258e-02	ci left: 1.688887e-01	ci right 1.749431e-01	k: 10314	n:60000
YBX2   60000 perm   10 sec   (5755 perm/sec)   p_kst 1.719000e-01   p_cons 9.583333e-03   p_joint 3.031667e-02

Joint ci ratio: 8.387808e-02	ci left: 2.898657e-02	ci right 3.153828e-02	k: 2117	n:70000
Cons ci ratio: 1.645414e-01	ci left: 7.380784e-03	ci right 8.717621e-03	k: 562	n:70000
KS ci ratio: 3.254198e-02	ci left: 1.688986e-01	ci right 1.745000e-01	k: 12018	n:70000
YBX2   70000 perm   12 sec   (5616 perm/sec)   p_kst 1.716857e-01   p_cons 8.028571e-03   p_joint 3.024286e-02

Joint ci ratio: 7.383119e-02	ci left: 3.277939e-02	ci right 3.530454e-02	k: 2722	n:80000
Cons ci ratio: 1.544513e-01	ci left: 7.370292e-03	ci right 8.615786e-03	k: 638	n:80000
KS ci ratio: 3.041085e-02	ci left: 1.693533e-01	ci right 1.745955e-01	k: 13757	n:80000
YBX2   80000 perm   15 sec   (5483 perm/sec)   p_kst 1.719625e-01   p_cons 7.975000e-03   p_joint 3.402500e-02

Joint ci ratio: 6.915866e-02	ci left: 3.327339e-02	ci right 3.566785e-02	k: 3101	n:90000
Cons ci ratio: 1.456054e-01	ci left: 7.406920e-03	ci right 8.580680e-03	k: 718	n:90000
KS ci ratio: 2.866018e-02	ci left: 1.696169e-01	ci right 1.745598e-01	k: 15487	n:90000
YBX2   90000 perm   17 sec   (5360 perm/sec)   p_kst 1.720778e-01   p_cons 7.977778e-03   p_joint 3.445556e-02

Joint ci ratio: 6.622577e-02	ci left: 3.272784e-02	ci right 3.497930e-02	k: 3384	n:100000
Cons ci ratio: 1.390034e-01	ci left: 7.341295e-03	ci right 8.447534e-03	k: 788	n:100000
KS ci ratio: 2.722852e-02	ci left: 1.693373e-01	ci right 1.740217e-01	k: 17167	n:100000
YBX2   100000 perm   19 sec   (5247 perm/sec)   p_kst 1.716700e-01   p_cons 7.880000e-03   p_joint 3.384000e-02

Joint ci ratio: 6.307809e-02	ci left: 3.284725e-02	ci right 3.499559e-02	k: 3730	n:110000
Cons ci ratio: 1.322966e-01	ci left: 7.394083e-03	ci right 8.450291e-03	k: 870	n:110000
KS ci ratio: 2.599446e-02	ci left: 1.690867e-01	ci right 1.735489e-01	k: 18844	n:110000
YBX2   110000 perm   21 sec   (5140 perm/sec)   p_kst 1.713091e-01   p_cons 7.909091e-03   p_joint 3.390909e-02

Joint ci ratio: 6.082077e-02	ci left: 3.243978e-02	ci right 3.448285e-02	k: 4014	n:120000
Cons ci ratio: 1.266766e-01	ci left: 7.414928e-03	ci right 8.425737e-03	k: 949	n:120000
KS ci ratio: 2.485075e-02	ci left: 1.696032e-01	ci right 1.738793e-01	k: 20608	n:120000
YBX2   120000 perm   24 sec   (5033 perm/sec)   p_kst 1.717333e-01   p_cons 7.908333e-03   p_joint 3.345000e-02

Joint ci ratio: 6.200181e-02	ci left: 2.890508e-02	ci right 3.076213e-02	k: 3877	n:130000
Cons ci ratio: 1.212428e-01	ci left: 7.493051e-03	ci right 8.467550e-03	k: 1036	n:130000
KS ci ratio: 2.385031e-02	ci left: 1.699903e-01	ci right 1.741012e-01	k: 22365	n:130000
YBX2   130000 perm   26 sec   (4934 perm/sec)   p_kst 1.720385e-01   p_cons 7.969231e-03   p_joint 2.982308e-02

Joint ci ratio: 5.462526e-02	ci left: 3.450858e-02	ci right 3.645357e-02	k: 4966	n:140000
Cons ci ratio: 1.165053e-01	ci left: 7.553870e-03	ci right 8.495249e-03	k: 1122	n:140000
KS ci ratio: 2.297033e-02	ci left: 1.702184e-01	ci right 1.741809e-01	k: 24107	n:140000
YBX2   140000 perm   29 sec   (4838 perm/sec)   p_kst 1.721929e-01   p_cons 8.014286e-03   p_joint 3.547143e-02

Joint ci ratio: 5.380777e-02	ci left: 3.325305e-02	ci right 3.509835e-02	k: 5125	n:150000
Cons ci ratio: 1.126594e-01	ci left: 7.555377e-03	ci right 8.463795e-03	k: 1200	n:150000
KS ci ratio: 2.222420e-02	ci left: 1.698676e-01	ci right 1.736918e-01	k: 25766	n:150000
YBX2   150000 perm   32 sec   (4737 perm/sec)   p_kst 1.717733e-01   p_cons 8.000000e-03   p_joint 3.416667e-02

Joint ci ratio: 5.361384e-02	ci left: 3.146375e-02	ci right 3.320325e-02	k: 5172	n:160000
Cons ci ratio: 1.093433e-01	ci left: 7.532821e-03	ci right 8.410149e-03	k: 1274	n:160000
KS ci ratio: 2.152123e-02	ci left: 1.698923e-01	ci right 1.735946e-01	k: 27478	n:160000
YBX2   160000 perm   34 sec   (4653 perm/sec)   p_kst 1.717375e-01   p_cons 7.962500e-03   p_joint 3.232500e-02

Joint ci ratio: 5.457634e-02	ci left: 2.864852e-02	ci right 3.026169e-02	k: 5006	n:170000
Cons ci ratio: 1.061058e-01	ci left: 7.541901e-03	ci right 8.392655e-03	k: 1353	n:170000
KS ci ratio: 2.089052e-02	ci left: 1.697870e-01	ci right 1.733772e-01	k: 29168	n:170000
YBX2   170000 perm   37 sec   (4571 perm/sec)   p_kst 1.715765e-01   p_cons 7.958824e-03   p_joint 2.944706e-02

Joint ci ratio: 5.223960e-02	ci left: 2.954035e-02	ci right 3.113038e-02	k: 5459	n:180000
Cons ci ratio: 1.032852e-01	ci left: 7.528660e-03	ci right 8.353973e-03	k: 1428	n:180000
KS ci ratio: 2.029314e-02	ci left: 1.699603e-01	ci right 1.734502e-01	k: 30906	n:180000
YBX2   180000 perm   40 sec   (4492 perm/sec)   p_kst 1.717000e-01   p_cons 7.933333e-03   p_joint 3.032778e-02

Joint ci ratio: 5.299639e-02	ci left: 2.724720e-02	ci right 2.873567e-02	k: 5317	n:190000
Cons ci ratio: 1.002757e-01	ci left: 7.578664e-03	ci right 8.383825e-03	k: 1515	n:190000
KS ci ratio: 1.973913e-02	ci left: 1.701902e-01	ci right 1.735883e-01	k: 32658	n:190000
YBX2   190000 perm   43 sec   (4405 perm/sec)   p_kst 1.718842e-01   p_cons 7.973684e-03   p_joint 2.798421e-02

Joint ci ratio: 5.190253e-02	ci left: 2.700980e-02	ci right 2.845393e-02	k: 5545	n:200000
Cons ci ratio: 9.782292e-02	ci left: 7.575192e-03	ci right 8.359170e-03	k: 1592	n:200000
KS ci ratio: 1.924031e-02	ci left: 1.702188e-01	ci right 1.735307e-01	k: 34374	n:200000
YBX2   200000 perm   46 sec   (4335 perm/sec)   p_kst 1.718700e-01   p_cons 7.960000e-03   p_joint 2.772500e-02

Outputting figure to mutsig2_images.part000000000192/YBX2.3_1127_200000_0.17187_0.00796_0.027725.png
                gene_name: YBX2
               theta_stop: 0.098 
                    nperm: 200000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.0080 
      ci_cons_bounds_left: 0.0076 
     ci_cons_bounds_right: 0.0084 
                  p_joint: 0.028 
     ci_joint_bounds_left: 0.027 
    ci_joint_bounds_right: 0.028 

Current progress: 61 percent done.
YWHAE
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.113069e-02	ci left: 4.660698e-01	ci right 4.857443e-01	k: 4759	n:10000
Cons ci ratio: 8.165271e-02	ci left: 1.795967e-01	ci right 1.949860e-01	k: 1872	n:10000
KS ci ratio: 3.145934e-02	ci left: 5.985520e-01	ci right 6.177849e-01	k: 6082	n:10000
YWHAE   10000 perm   1 sec   (7030 perm/sec)   p_kst 6.082000e-01   p_cons 1.872000e-01   p_joint 4.759000e-01

Outputting figure to mutsig2_images.part000000000192/YWHAE.3_792_10000_0.6082_0.1872_0.4759.png
                gene_name: YWHAE
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 63 percent done.
ZADH2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.461939e-02	ci left: 2.602281e-01	ci right 2.777067e-01	k: 2689	n:10000
Cons ci ratio: 1.212799e-02	ci left: 9.069966e-01	ci right 9.181617e-01	k: 9127	n:10000
KS ci ratio: 1.021741e-01	ci left: 1.217066e-01	ci right 1.349108e-01	k: 1282	n:10000
ZADH2   10000 perm   1 sec   (6810 perm/sec)   p_kst 1.282000e-01   p_cons 9.127000e-01   p_joint 2.689000e-01

Joint ci ratio: 5.779492e-02	ci left: 1.815676e-01	ci right 1.924236e-01	k: 3739	n:20000
Cons ci ratio: 8.587646e-03	ci left: 9.084477e-01	ci right 9.163320e-01	k: 18249	n:20000
KS ci ratio: 7.333518e-02	ci left: 1.203971e-01	ci right 1.296122e-01	k: 2499	n:20000
ZADH2   20000 perm   3 sec   (6043 perm/sec)   p_kst 1.249500e-01   p_cons 9.124500e-01   p_joint 1.869500e-01

Outputting figure to mutsig2_images.part000000000192/ZADH2.3_1142_20000_0.12495_0.91245_0.18695.png
                gene_name: ZADH2
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 64 percent done.
ZAR1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.793285e-01	ci left: 4.149837e-02	ci right 4.976893e-02	k: 455	n:10000
Cons ci ratio: 4.045706e-01	ci left: 7.422760e-03	ci right 1.127121e-02	k: 92	n:10000
KS ci ratio: 1.685487e-02	ci left: 8.367382e-01	ci right 8.510609e-01	k: 8440	n:10000
ZAR1   10000 perm   1 sec   (7485 perm/sec)   p_kst 8.440000e-01   p_cons 9.200000e-03   p_joint 4.550000e-02

Joint ci ratio: 1.332089e-01	ci left: 3.872934e-02	ci right 4.430495e-02	k: 829	n:20000
Cons ci ratio: 2.830257e-01	ci left: 8.155818e-03	ci right 1.088963e-02	k: 189	n:20000
KS ci ratio: 1.198758e-02	ci left: 8.373262e-01	ci right 8.474741e-01	k: 16849	n:20000
ZAR1   20000 perm   3 sec   (6615 perm/sec)   p_kst 8.424500e-01   p_cons 9.450000e-03   p_joint 4.145000e-02

Joint ci ratio: 1.082224e-01	ci left: 3.962807e-02	ci right 4.419451e-02	k: 1256	n:30000
Cons ci ratio: 2.155883e-01	ci left: 9.724379e-03	ci right 1.210509e-02	k: 326	n:30000
KS ci ratio: 9.827551e-03	ci left: 8.371829e-01	ci right 8.454842e-01	k: 25241	n:30000
ZAR1   30000 perm   5 sec   (6324 perm/sec)   p_kst 8.413667e-01   p_cons 1.086667e-02   p_joint 4.186667e-02

Joint ci ratio: 1.183365e-01	ci left: 2.511787e-02	ci right 2.830134e-02	k: 1067	n:40000
Cons ci ratio: 1.809207e-01	ci left: 1.054986e-02	ci right 1.267193e-02	k: 463	n:40000
KS ci ratio: 8.490635e-03	ci left: 8.383883e-01	ci right 8.455620e-01	k: 33680	n:40000
ZAR1   40000 perm   7 sec   (6103 perm/sec)   p_kst 8.420000e-01   p_cons 1.157500e-02   p_joint 2.667500e-02

Joint ci ratio: 7.248497e-02	ci left: 5.325347e-02	ci right 5.727836e-02	k: 2762	n:50000
Cons ci ratio: 1.618207e-01	ci left: 1.066069e-02	ci right 1.255665e-02	k: 579	n:50000
KS ci ratio: 7.593644e-03	ci left: 8.387933e-01	ci right 8.452070e-01	k: 42101	n:50000
ZAR1   50000 perm   8 sec   (5930 perm/sec)   p_kst 8.420200e-01   p_cons 1.158000e-02   p_joint 5.524000e-02

Joint ci ratio: 8.745457e-02	ci left: 3.098126e-02	ci right 3.383087e-02	k: 1943	n:60000
Cons ci ratio: 1.562327e-01	ci left: 9.571629e-03	ci right 1.120958e-02	k: 622	n:60000
KS ci ratio: 6.921220e-03	ci left: 8.394932e-01	ci right 8.453403e-01	k: 50546	n:60000
ZAR1   60000 perm   10 sec   (5778 perm/sec)   p_kst 8.424333e-01   p_cons 1.036667e-02   p_joint 3.238333e-02

Joint ci ratio: 7.227516e-02	ci left: 3.886911e-02	ci right 4.179772e-02	k: 2822	n:70000
Cons ci ratio: 1.449293e-01	ci left: 9.592809e-03	ci right 1.110534e-02	k: 723	n:70000
KS ci ratio: 6.407903e-03	ci left: 8.397082e-01	ci right 8.451205e-01	k: 58970	n:70000
ZAR1   70000 perm   12 sec   (5637 perm/sec)   p_kst 8.424286e-01   p_cons 1.032857e-02   p_joint 4.031429e-02

Joint ci ratio: 6.446731e-02	ci left: 4.274909e-02	ci right 4.560908e-02	k: 3533	n:80000
Cons ci ratio: 1.351922e-01	ci left: 9.696477e-03	ci right 1.111437e-02	k: 831	n:80000
KS ci ratio: 6.004834e-03	ci left: 8.394036e-01	ci right 8.444716e-01	k: 67356	n:80000
ZAR1   80000 perm   15 sec   (5501 perm/sec)   p_kst 8.419500e-01   p_cons 1.038750e-02   p_joint 4.416250e-02

Joint ci ratio: 6.017911e-02	ci left: 4.366572e-02	ci right 4.638593e-02	k: 4051	n:90000
Cons ci ratio: 1.282941e-01	ci left: 9.607607e-03	ci right 1.093535e-02	k: 923	n:90000
KS ci ratio: 5.660576e-03	ci left: 8.395893e-01	ci right 8.443664e-01	k: 75779	n:90000
ZAR1   90000 perm   17 sec   (5371 perm/sec)   p_kst 8.419889e-01   p_cons 1.025556e-02   p_joint 4.501111e-02

Joint ci ratio: 5.675661e-02	ci left: 4.423629e-02	ci right 4.683016e-02	k: 4552	n:100000
Cons ci ratio: 1.209785e-01	ci left: 9.761057e-03	ci right 1.102758e-02	k: 1038	n:100000
KS ci ratio: 5.380353e-03	ci left: 8.392014e-01	ci right 8.437387e-01	k: 84148	n:100000
ZAR1   100000 perm   19 sec   (5253 perm/sec)   p_kst 8.414800e-01   p_cons 1.038000e-02   p_joint 4.552000e-02

Joint ci ratio: 5.263112e-02	ci left: 4.674413e-02	ci right 4.927977e-02	k: 5280	n:110000
Cons ci ratio: 1.155479e-01	ci left: 9.755891e-03	ci right 1.096104e-02	k: 1138	n:110000
KS ci ratio: 5.125205e-03	ci left: 8.395568e-01	ci right 8.438797e-01	k: 92590	n:110000
ZAR1   110000 perm   21 sec   (5125 perm/sec)   p_kst 8.417273e-01   p_cons 1.034545e-02   p_joint 4.800000e-02

Joint ci ratio: 5.229263e-02	ci left: 4.356236e-02	ci right 4.590971e-02	k: 5367	n:120000
Cons ci ratio: 1.105634e-01	ci left: 9.793173e-03	ci right 1.094734e-02	k: 1243	n:120000
KS ci ratio: 4.911652e-03	ci left: 8.393961e-01	ci right 8.435374e-01	k: 100977	n:120000
ZAR1   120000 perm   24 sec   (5000 perm/sec)   p_kst 8.414750e-01   p_cons 1.035833e-02   p_joint 4.472500e-02

Joint ci ratio: 4.870609e-02	ci left: 4.630438e-02	ci right 4.862355e-02	k: 6169	n:130000
Cons ci ratio: 1.059350e-01	ci left: 9.870605e-03	ci right 1.098216e-02	k: 1354	n:130000
KS ci ratio: 4.724094e-03	ci left: 8.391863e-01	ci right 8.431677e-01	k: 109354	n:130000
ZAR1   130000 perm   27 sec   (4904 perm/sec)   p_kst 8.411846e-01   p_cons 1.041538e-02   p_joint 4.745385e-02

Joint ci ratio: 4.653004e-02	ci left: 4.712621e-02	ci right 4.937826e-02	k: 6754	n:140000
Cons ci ratio: 1.025166e-01	ci left: 9.805558e-03	ci right 1.087201e-02	k: 1446	n:140000
KS ci ratio: 4.566095e-03	ci left: 8.384423e-01	ci right 8.422865e-01	k: 117652	n:140000
ZAR1   140000 perm   29 sec   (4815 perm/sec)   p_kst 8.403714e-01   p_cons 1.032857e-02   p_joint 4.824286e-02

Joint ci ratio: 4.662669e-02	ci left: 4.394979e-02	ci right 4.605451e-02	k: 6749	n:150000
Cons ci ratio: 9.857119e-02	ci left: 9.918771e-03	ci right 1.095362e-02	k: 1564	n:150000
KS ci ratio: 4.410247e-03	ci left: 8.385702e-01	ci right 8.422833e-01	k: 126065	n:150000
ZAR1   150000 perm   32 sec   (4683 perm/sec)   p_kst 8.404333e-01   p_cons 1.042667e-02   p_joint 4.499333e-02

Outputting figure to mutsig2_images.part000000000192/ZAR1.3_1291_150000_0.84043_0.010427_0.044993.png
                gene_name: ZAR1
               theta_stop: 0.099 
                    nperm: 150000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.010 
      ci_cons_bounds_left: 0.0099 
     ci_cons_bounds_right: 0.011 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.046 

Current progress: 66 percent done.
XG
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.911757e-01	ci left: 1.520682e-02	ci right 2.047941e-02	k: 177	n:10000
Cons ci ratio: 3.823649e-01	ci left: 8.414755e-03	ci right 1.247803e-02	k: 103	n:10000
KS ci ratio: 1.558138e-02	ci left: 8.567172e-01	ci right 8.702703e-01	k: 8636	n:10000
XG   10000 perm   1 sec   (7417 perm/sec)   p_kst 8.636000e-01   p_cons 1.030000e-02   p_joint 1.770000e-02

Joint ci ratio: 2.382876e-01	ci left: 1.175842e-02	ci right 1.498535e-02	k: 266	n:20000
Cons ci ratio: 2.876468e-01	ci left: 7.877125e-03	ci right 1.056846e-02	k: 183	n:20000
KS ci ratio: 1.088792e-02	ci left: 8.615558e-01	ci right 8.710374e-01	k: 17327	n:20000
XG   20000 perm   3 sec   (6638 perm/sec)   p_kst 8.663500e-01   p_cons 9.150000e-03   p_joint 1.330000e-02

Joint ci ratio: 1.685986e-01	ci left: 1.620613e-02	ci right 1.922164e-02	k: 530	n:30000
Cons ci ratio: 2.352951e-01	ci left: 8.087922e-03	ci right 1.027538e-02	k: 274	n:30000
KS ci ratio: 8.858335e-03	ci left: 8.632739e-01	ci right 8.709882e-01	k: 26015	n:30000
XG   30000 perm   5 sec   (6323 perm/sec)   p_kst 8.671667e-01   p_cons 9.133333e-03   p_joint 1.766667e-02

Joint ci ratio: 1.303773e-01	ci left: 2.065741e-02	ci right 2.356254e-02	k: 883	n:40000
Cons ci ratio: 1.970149e-01	ci left: 8.834070e-03	ci right 1.078808e-02	k: 391	n:40000
KS ci ratio: 7.711063e-03	ci left: 8.625973e-01	ci right 8.692994e-01	k: 34639	n:40000
XG   40000 perm   7 sec   (6098 perm/sec)   p_kst 8.659750e-01   p_cons 9.775000e-03   p_joint 2.207500e-02

Joint ci ratio: 8.808451e-02	ci left: 3.641929e-02	ci right 3.979461e-02	k: 1904	n:50000
Cons ci ratio: 1.782476e-01	ci left: 8.725652e-03	ci right 1.045200e-02	k: 478	n:50000
KS ci ratio: 6.880728e-03	ci left: 8.635077e-01	ci right 8.694897e-01	k: 43326	n:50000
XG   50000 perm   8 sec   (5910 perm/sec)   p_kst 8.665200e-01   p_cons 9.560000e-03   p_joint 3.808000e-02

Joint ci ratio: 9.112866e-02	ci left: 2.855169e-02	ci right 3.129403e-02	k: 1794	n:60000
Cons ci ratio: 1.657728e-01	ci left: 8.467520e-03	ci right 1.001384e-02	k: 553	n:60000
KS ci ratio: 6.298908e-03	ci left: 8.631138e-01	ci right 8.685841e-01	k: 51952	n:60000
XG   60000 perm   10 sec   (5724 perm/sec)   p_kst 8.658667e-01   p_cons 9.216667e-03   p_joint 2.990000e-02

Joint ci ratio: 9.613752e-02	ci left: 2.208352e-02	ci right 2.432767e-02	k: 1623	n:70000
Cons ci ratio: 1.539979e-01	ci left: 8.464767e-03	ci right 9.890650e-03	k: 641	n:70000
KS ci ratio: 5.837966e-03	ci left: 8.630654e-01	ci right 8.681328e-01	k: 60593	n:70000
XG   70000 perm   13 sec   (5567 perm/sec)   p_kst 8.656143e-01   p_cons 9.157143e-03   p_joint 2.318571e-02

Joint ci ratio: 9.591911e-02	ci left: 1.946820e-02	ci right 2.144179e-02	k: 1635	n:80000
Cons ci ratio: 1.432379e-01	ci left: 8.610279e-03	ci right 9.950670e-03	k: 741	n:80000
KS ci ratio: 5.466516e-03	ci left: 8.629903e-01	ci right 8.677332e-01	k: 69230	n:80000
XG   80000 perm   15 sec   (5438 perm/sec)   p_kst 8.653750e-01   p_cons 9.262500e-03   p_joint 2.043750e-02

Joint ci ratio: 9.014637e-02	ci left: 1.964934e-02	ci right 2.151507e-02	k: 1851	n:90000
Cons ci ratio: 1.338973e-01	ci left: 8.801345e-03	ci right 1.007502e-02	k: 848	n:90000
KS ci ratio: 5.158722e-03	ci left: 8.629068e-01	ci right 8.673808e-01	k: 77864	n:90000
XG   90000 perm   17 sec   (5333 perm/sec)   p_kst 8.651556e-01   p_cons 9.422222e-03   p_joint 2.056667e-02

Joint ci ratio: 7.042656e-02	ci left: 2.899067e-02	ci right 3.111670e-02	k: 3004	n:100000
Cons ci ratio: 1.272533e-01	ci left: 8.801496e-03	ci right 1.000722e-02	k: 939	n:100000
KS ci ratio: 4.896617e-03	ci left: 8.628966e-01	ci right 8.671422e-01	k: 86503	n:100000
XG   100000 perm   19 sec   (5230 perm/sec)   p_kst 8.650300e-01   p_cons 9.390000e-03   p_joint 3.004000e-02

Joint ci ratio: 8.158757e-02	ci left: 1.971526e-02	ci right 2.140106e-02	k: 2260	n:110000
Cons ci ratio: 1.205105e-01	ci left: 8.952808e-03	ci right 1.010964e-02	k: 1047	n:110000
KS ci ratio: 4.665335e-03	ci left: 8.631677e-01	ci right 8.672131e-01	k: 95172	n:110000
XG   110000 perm   21 sec   (5132 perm/sec)   p_kst 8.652000e-01   p_cons 9.518182e-03   p_joint 2.054545e-02

Joint ci ratio: 7.822021e-02	ci left: 1.969752e-02	ci right 2.130911e-02	k: 2459	n:120000
Cons ci ratio: 1.152413e-01	ci left: 8.999346e-03	ci right 1.010788e-02	k: 1145	n:120000
KS ci ratio: 4.469904e-03	ci left: 8.630871e-01	ci right 8.669619e-01	k: 103804	n:120000
XG   120000 perm   24 sec   (5035 perm/sec)   p_kst 8.650333e-01   p_cons 9.541667e-03   p_joint 2.049167e-02

Joint ci ratio: 7.735873e-02	ci left: 1.861939e-02	ci right 2.012523e-02	k: 2517	n:130000
Cons ci ratio: 1.108330e-01	ci left: 9.002250e-03	ci right 1.006595e-02	k: 1238	n:130000
KS ci ratio: 4.301093e-03	ci left: 8.628055e-01	ci right 8.665321e-01	k: 112408	n:130000
XG   130000 perm   26 sec   (4943 perm/sec)   p_kst 8.646769e-01   p_cons 9.523077e-03   p_joint 1.936154e-02

Joint ci ratio: 7.267684e-02	ci left: 1.961677e-02	ci right 2.110319e-02	k: 2849	n:140000
Cons ci ratio: 1.063321e-01	ci left: 9.102790e-03	ci right 1.013196e-02	k: 1345	n:140000
KS ci ratio: 4.136631e-03	ci left: 8.633281e-01	ci right 8.669139e-01	k: 121118	n:140000
XG   140000 perm   29 sec   (4850 perm/sec)   p_kst 8.651286e-01   p_cons 9.607143e-03   p_joint 2.035000e-02

Joint ci ratio: 7.225055e-02	ci left: 1.855081e-02	ci right 1.994786e-02	k: 2886	n:150000
Cons ci ratio: 1.030206e-01	ci left: 9.067237e-03	ci right 1.005853e-02	k: 1433	n:150000
KS ci ratio: 3.996851e-03	ci left: 8.633608e-01	ci right 8.668251e-01	k: 129765	n:150000
XG   150000 perm   31 sec   (4768 perm/sec)   p_kst 8.651000e-01   p_cons 9.553333e-03   p_joint 1.924000e-02

Joint ci ratio: 6.992699e-02	ci left: 1.858848e-02	ci right 1.994152e-02	k: 3081	n:160000
Cons ci ratio: 9.963756e-02	ci left: 9.103613e-03	ci right 1.006428e-02	k: 1532	n:160000
KS ci ratio: 3.866408e-03	ci left: 8.636300e-01	ci right 8.669818e-01	k: 138450	n:160000
XG   160000 perm   34 sec   (4686 perm/sec)   p_kst 8.653125e-01   p_cons 9.575000e-03   p_joint 1.925625e-02

Outputting figure to mutsig2_images.part000000000192/XG.2_635_160000_0.86531_0.009575_0.019256.png
                gene_name: XG
               theta_stop: 0.100 
                    nperm: 160000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.0096 
      ci_cons_bounds_left: 0.0091 
     ci_cons_bounds_right: 0.010 
                  p_joint: 0.019 
     ci_joint_bounds_left: 0.019 
    ci_joint_bounds_right: 0.020 

Current progress: 68 percent done.
XIAP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.540245e-02	ci left: 8.594729e-01	ci right 8.729130e-01	k: 8663	n:10000
Cons ci ratio: 8.123819e-03	ci left: 9.548231e-01	ci right 9.627068e-01	k: 9589	n:10000
KS ci ratio: 2.368207e-02	ci left: 7.238082e-01	ci right 7.412561e-01	k: 7326	n:10000
XIAP   10000 perm   1 sec   (7288 perm/sec)   p_kst 7.326000e-01   p_cons 9.589000e-01   p_joint 8.663000e-01

Outputting figure to mutsig2_images.part000000000192/XIAP.2_1518_10000_0.7326_0.9589_0.8663.png
                gene_name: XIAP
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 69 percent done.
XKR4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.022247e-02	ci left: 2.885499e-01	ci right 3.065682e-01	k: 2975	n:10000
Cons ci ratio: 7.555118e-02	ci left: 2.040239e-01	ci right 2.201442e-01	k: 2120	n:10000
KS ci ratio: 5.015712e-02	ci left: 3.695773e-01	ci right 3.886931e-01	k: 3791	n:10000
XKR4   10000 perm   2 sec   (6518 perm/sec)   p_kst 3.791000e-01   p_cons 2.120000e-01   p_joint 2.975000e-01

Outputting figure to mutsig2_images.part000000000192/XKR4.2_1965_10000_0.3791_0.212_0.2975.png
                gene_name: XKR4
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 71 percent done.
XKR7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.755249e-02	ci left: 6.599808e-01	ci right 6.785206e-01	k: 6693	n:10000
KS ci ratio: 1.994303e-02	ci left: 7.863438e-01	ci right 8.022844e-01	k: 7944	n:10000
XKR7   10000 perm   1 sec   (6891 perm/sec)   p_kst 7.944000e-01   p_cons 6.693000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/XKR7.2_1752_10000_0.7944_0.6693_1.png
                gene_name: XKR7
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 73 percent done.
XKR8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.742813e-02	ci left: 6.619944e-01	ci right 6.805058e-01	k: 6713	n:10000
Cons ci ratio: 1.453334e-02	ci left: 8.726519e-01	ci right 8.855263e-01	k: 8792	n:10000
KS ci ratio: 5.136070e-02	ci left: 3.585374e-01	ci right 3.775395e-01	k: 3680	n:10000
XKR8   10000 perm   1 sec   (7256 perm/sec)   p_kst 3.680000e-01   p_cons 8.792000e-01   p_joint 6.713000e-01

Outputting figure to mutsig2_images.part000000000192/XKR8.2_1200_10000_0.368_0.8792_0.6713.png
                gene_name: XKR8
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.87 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 75 percent done.
XPO1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.295449e-02	ci left: 3.445215e-01	ci right 3.633636e-01	k: 3539	n:10000
Cons ci ratio: 4.478554e-02	ci left: 4.239572e-01	ci right 4.434814e-01	k: 4337	n:10000
KS ci ratio: 5.910361e-02	ci left: 2.963806e-01	ci right 3.145329e-01	k: 3054	n:10000
XPO1   10000 perm   2 sec   (6489 perm/sec)   p_kst 3.054000e-01   p_cons 4.337000e-01   p_joint 3.539000e-01

Outputting figure to mutsig2_images.part000000000192/XPO1.2_3312_10000_0.3054_0.4337_0.3539.png
                gene_name: XPO1
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 76 percent done.
XPO7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.239124e-02	ci left: 5.844994e-01	ci right 6.038457e-01	k: 5942	n:10000
Cons ci ratio: 4.172899e-02	ci left: 4.588797e-01	ci right 4.785385e-01	k: 4687	n:10000
KS ci ratio: 4.286896e-02	ci left: 4.455036e-01	ci right 4.651224e-01	k: 4553	n:10000
XPO7   10000 perm   2 sec   (6193 perm/sec)   p_kst 4.553000e-01   p_cons 4.687000e-01   p_joint 5.942000e-01

Outputting figure to mutsig2_images.part000000000192/XPO7.2_3428_10000_0.4553_0.4687_0.5942.png
                gene_name: XPO7
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 78 percent done.
XRCC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.784546e-02	ci left: 6.552495e-01	ci right 6.738545e-01	k: 6646	n:10000
Cons ci ratio: 8.603533e-02	ci left: 1.644533e-01	ci right 1.793384e-01	k: 1718	n:10000
KS ci ratio: 9.888455e-02	ci left: 1.290445e-01	ci right 1.425684e-01	k: 1357	n:10000
XRCC1   10000 perm   1 sec   (6995 perm/sec)   p_kst 1.357000e-01   p_cons 1.718000e-01   p_joint 6.646000e-01

Outputting figure to mutsig2_images.part000000000192/XRCC1.2_1970_10000_0.1357_0.1718_0.6646.png
                gene_name: XRCC1
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.67 

Current progress: 80 percent done.
XRCC6BP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.537586e-02	ci left: 8.598813e-01	ci right 8.733044e-01	k: 8667	n:10000
Cons ci ratio: 1.697915e-01	ci left: 4.628962e-02	ci right 5.497454e-02	k: 505	n:10000
KS ci ratio: 7.076461e-02	ci left: 2.264216e-01	ci right 2.431331e-01	k: 2347	n:10000
XRCC6BP1   10000 perm   1 sec   (7365 perm/sec)   p_kst 2.347000e-01   p_cons 5.050000e-02   p_joint 8.667000e-01

Joint ci ratio: 1.243385e-02	ci left: 8.272515e-01	ci right 8.376517e-01	k: 16650	n:20000
Cons ci ratio: 1.225055e-01	ci left: 4.570923e-02	ci right 5.172285e-02	k: 973	n:20000
KS ci ratio: 5.022733e-02	ci left: 2.275518e-01	ci right 2.393258e-01	k: 4668	n:20000
XRCC6BP1   20000 perm   3 sec   (6595 perm/sec)   p_kst 2.334000e-01   p_cons 4.865000e-02   p_joint 8.325000e-01

Joint ci ratio: 8.938895e-03	ci left: 8.611486e-01	ci right 8.689139e-01	k: 25952	n:30000
Cons ci ratio: 9.833955e-02	ci left: 4.782119e-02	ci right 5.279969e-02	k: 1508	n:30000
KS ci ratio: 4.115433e-02	ci left: 2.273984e-01	ci right 2.369869e-01	k: 6965	n:30000
XRCC6BP1   30000 perm   5 sec   (6274 perm/sec)   p_kst 2.321667e-01   p_cons 5.026667e-02   p_joint 8.650667e-01

Outputting figure to mutsig2_images.part000000000192/XRCC6BP1.2_765_30000_0.23217_0.050267_0.86507.png
                gene_name: XRCC6BP1
               theta_stop: 0.098 
                    nperm: 30000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.050 
      ci_cons_bounds_left: 0.048 
     ci_cons_bounds_right: 0.053 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 81 percent done.
XRRA1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.503252e-02	ci left: 4.212652e-01	ci right 4.407750e-01	k: 4310	n:10000
Cons ci ratio: 2.994177e-02	ci left: 6.219580e-01	ci right 6.409654e-01	k: 6315	n:10000
KS ci ratio: 9.995174e-02	ci left: 1.265977e-01	ci right 1.400167e-01	k: 1332	n:10000
XRRA1   10000 perm   2 sec   (6616 perm/sec)   p_kst 1.332000e-01   p_cons 6.315000e-01   p_joint 4.310000e-01

Outputting figure to mutsig2_images.part000000000192/XRRA1.2_2447_10000_0.1332_0.6315_0.431.png
                gene_name: XRRA1
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 83 percent done.
XYLB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.565505e-03	ci left: 9.694208e-01	ci right 9.758999e-01	k: 9728	n:10000
Cons ci ratio: 3.247189e-02	ci left: 5.832952e-01	ci right 6.026506e-01	k: 5930	n:10000
KS ci ratio: 1.277834e-02	ci left: 8.980579e-01	ci right 9.097056e-01	k: 9040	n:10000
XYLB   10000 perm   1 sec   (6829 perm/sec)   p_kst 9.040000e-01   p_cons 5.930000e-01   p_joint 9.728000e-01

Outputting figure to mutsig2_images.part000000000192/XYLB.2_1687_10000_0.904_0.593_0.9728.png
                gene_name: XYLB
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 85 percent done.
XYLT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.964019e-02	ci left: 6.266822e-01	ci right 6.456384e-01	k: 6362	n:10000
Cons ci ratio: 5.522995e-02	ci left: 3.256490e-01	ci right 3.442472e-01	k: 3349	n:10000
KS ci ratio: 6.526634e-02	ci left: 2.563695e-01	ci right 2.737676e-01	k: 2650	n:10000
XYLT2   10000 perm   2 sec   (6578 perm/sec)   p_kst 2.650000e-01   p_cons 3.349000e-01   p_joint 6.362000e-01

Outputting figure to mutsig2_images.part000000000192/XYLT2.2_2642_10000_0.265_0.3349_0.6362.png
                gene_name: XYLT2
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 86 percent done.
YAP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.247453e-02	ci left: 9.022685e-01	ci right 9.136926e-01	k: 9081	n:10000
Cons ci ratio: 6.275439e-03	ci left: 9.718541e-01	ci right 9.780650e-01	k: 9751	n:10000
KS ci ratio: 2.492391e-02	ci left: 7.031147e-01	ci right 7.209616e-01	k: 7121	n:10000
YAP1   10000 perm   1 sec   (7074 perm/sec)   p_kst 7.121000e-01   p_cons 9.751000e-01   p_joint 9.081000e-01

Outputting figure to mutsig2_images.part000000000192/YAP1.2_1563_10000_0.7121_0.9751_0.9081.png
                gene_name: YAP1
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 88 percent done.
YARS
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.095471e-02	ci left: 3.622168e-01	ci right 3.812580e-01	k: 3717	n:10000
Cons ci ratio: 1.558798e-02	ci left: 8.566152e-01	ci right 8.701724e-01	k: 8635	n:10000
KS ci ratio: 8.798932e-02	ci left: 1.582644e-01	ci right 1.729310e-01	k: 1655	n:10000
YARS   10000 perm   1 sec   (7237 perm/sec)   p_kst 1.655000e-01   p_cons 8.635000e-01   p_joint 3.717000e-01

Outputting figure to mutsig2_images.part000000000192/YARS.2_1639_10000_0.1655_0.8635_0.3717.png
                gene_name: YARS
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 90 percent done.
YIPF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.804254e-03	ci left: 9.364092e-01	ci right 9.457318e-01	k: 9412	n:10000
Cons ci ratio: 6.616595e-02	ci left: 2.511271e-01	ci right 2.684130e-01	k: 2597	n:10000
KS ci ratio: 5.126149e-02	ci left: 3.594324e-01	ci right 3.784440e-01	k: 3689	n:10000
YIPF3   10000 perm   1 sec   (7333 perm/sec)   p_kst 3.689000e-01   p_cons 2.597000e-01   p_joint 9.412000e-01

Outputting figure to mutsig2_images.part000000000192/YIPF3.2_1089_10000_0.3689_0.2597_0.9412.png
                gene_name: YIPF3
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 92 percent done.
YIPF5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.746868e-02	ci left: 5.126548e-01	ci right 5.323321e-01	k: 5225	n:10000
KS ci ratio: 4.004989e-02	ci left: 4.793568e-01	ci right 4.990495e-01	k: 4892	n:10000
YIPF5   10000 perm   1 sec   (7502 perm/sec)   p_kst 4.892000e-01   p_cons 5.225000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/YIPF5.2_794_10000_0.4892_0.5225_1.png
                gene_name: YIPF5
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
YIPF6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.635946e-02	ci left: 8.445820e-01	ci right 8.586125e-01	k: 8517	n:10000
Cons ci ratio: 4.947173e-02	ci left: 3.760446e-01	ci right 3.952221e-01	k: 3856	n:10000
KS ci ratio: 1.910962e-02	ci left: 8.001410e-01	ci right 8.156792e-01	k: 8080	n:10000
YIPF6   10000 perm   1 sec   (7861 perm/sec)   p_kst 8.080000e-01   p_cons 3.856000e-01   p_joint 8.517000e-01

Outputting figure to mutsig2_images.part000000000192/YIPF6.2_739_10000_0.808_0.3856_0.8517.png
                gene_name: YIPF6
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 95 percent done.
YTHDF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.213668e-02	ci left: 5.883129e-01	ci right 6.076300e-01	k: 5980	n:10000
KS ci ratio: 5.612854e-03	ci left: 9.770621e-01	ci right 9.826535e-01	k: 9800	n:10000
YTHDF1   10000 perm   1 sec   (6770 perm/sec)   p_kst 9.800000e-01   p_cons 5.980000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/YTHDF1.2_1700_10000_0.98_0.598_1.png
                gene_name: YTHDF1
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
YTHDF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.301551e-01	ci left: 1.160595e-02	ci right 1.628351e-02	k: 138	n:10000
Cons ci ratio: 2.092556e-01	ci left: 3.034440e-02	ci right 3.753044e-02	k: 338	n:10000
KS ci ratio: 2.577789e-01	ci left: 1.968303e-02	ci right 2.559958e-02	k: 225	n:10000
YTHDF2   10000 perm   1 sec   (6769 perm/sec)   p_kst 2.250000e-02   p_cons 3.380000e-02   p_joint 1.380000e-02

Joint ci ratio: 3.578090e-02	ci left: 3.682841e-01	ci right 3.817523e-01	k: 7500	n:20000
Cons ci ratio: 1.456506e-01	ci left: 3.239930e-02	ci right 3.753705e-02	k: 698	n:20000
KS ci ratio: 1.885661e-01	ci left: 1.915306e-02	ci right 2.318783e-02	k: 422	n:20000
YTHDF2   20000 perm   3 sec   (6022 perm/sec)   p_kst 2.110000e-02   p_cons 3.490000e-02   p_joint 3.750000e-01

Joint ci ratio: 1.215379e-02	ci left: 7.714068e-01	ci right 7.808730e-01	k: 23285	n:30000
Cons ci ratio: 1.175088e-01	ci left: 3.366123e-02	ci right 3.789596e-02	k: 1072	n:30000
KS ci ratio: 1.555373e-01	ci left: 1.911875e-02	ci right 2.237499e-02	k: 621	n:30000
YTHDF2   30000 perm   5 sec   (5763 perm/sec)   p_kst 2.070000e-02   p_cons 3.573333e-02   p_joint 7.761667e-01

Joint ci ratio: 3.495976e-02	ci left: 2.349514e-01	ci right 2.433365e-01	k: 9565	n:40000
Cons ci ratio: 1.009877e-01	ci left: 3.446392e-02	ci right 3.815379e-02	k: 1451	n:40000
KS ci ratio: 1.359039e-01	ci left: 1.898872e-02	ci right 2.178152e-02	k: 814	n:40000
YTHDF2   40000 perm   7 sec   (5455 perm/sec)   p_kst 2.035000e-02   p_cons 3.627500e-02   p_joint 2.391250e-01

Joint ci ratio: 3.126297e-02	ci left: 2.354660e-01	ci right 2.429643e-01	k: 11960	n:50000
Cons ci ratio: 9.001805e-02	ci left: 3.489277e-02	ci right 3.820132e-02	k: 1826	n:50000
KS ci ratio: 1.212984e-01	ci left: 1.921762e-02	ci right 2.171849e-02	k: 1022	n:50000
YTHDF2   50000 perm   9 sec   (5363 perm/sec)   p_kst 2.044000e-02   p_cons 3.652000e-02   p_joint 2.392000e-01

Joint ci ratio: 8.651289e-03	ci left: 7.704811e-01	ci right 7.771924e-01	k: 46431	n:60000
Cons ci ratio: 8.173871e-02	ci left: 3.540568e-02	ci right 3.843932e-02	k: 2214	n:60000
KS ci ratio: 1.112212e-01	ci left: 1.915408e-02	ci right 2.142599e-02	k: 1216	n:60000
YTHDF2   60000 perm   11 sec   (5268 perm/sec)   p_kst 2.026667e-02   p_cons 3.690000e-02   p_joint 7.738500e-01

Joint ci ratio: 2.642662e-02	ci left: 2.359866e-01	ci right 2.423207e-01	k: 16740	n:70000
Cons ci ratio: 7.637113e-02	ci left: 3.488448e-02	ci right 3.766841e-02	k: 2538	n:70000
KS ci ratio: 1.028539e-01	ci left: 1.928200e-02	ci right 2.138660e-02	k: 1422	n:70000
YTHDF2   70000 perm   14 sec   (5178 perm/sec)   p_kst 2.031429e-02   p_cons 3.625714e-02   p_joint 2.391429e-01

Joint ci ratio: 2.477821e-02	ci left: 2.353386e-01	ci right 2.412554e-01	k: 19063	n:80000
Cons ci ratio: 7.169179e-02	ci left: 3.473198e-02	ci right 3.732681e-02	k: 2881	n:80000
KS ci ratio: 9.658417e-02	ci left: 1.919969e-02	ci right 2.116032e-02	k: 1613	n:80000
YTHDF2   80000 perm   16 sec   (5083 perm/sec)   p_kst 2.016250e-02   p_cons 3.601250e-02   p_joint 2.382875e-01

Outputting figure to mutsig2_images.part000000000192/YTHDF2.2_1760_80000_0.020162_0.036013_0.23829.png
                gene_name: YTHDF2
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.036 
      ci_cons_bounds_left: 0.035 
     ci_cons_bounds_right: 0.037 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.24 

Current progress: 98 percent done.
YWHAB
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.930512e-02	ci left: 3.776368e-01	ci right 3.968289e-01	k: 3872	n:10000
KS ci ratio: 7.810527e-02	ci left: 1.932819e-01	ci right 2.090925e-01	k: 2011	n:10000
YWHAB   10000 perm   1 sec   (7664 perm/sec)   p_kst 2.011000e-01   p_cons 3.872000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000192/YWHAB.2_761_10000_0.2011_0.3872_1.png
                gene_name: YWHAB
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000192
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 192 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1727>
Subject: Job 9894209: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1727>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000193> was used as the working directory.
Started at Sat Oct  6 00:36:19 2012
Results reported at Sat Oct  6 00:45:40 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000193.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000193.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 193  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000193.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    533.27 sec.
    Max Memory :      3578 MB
    Max Swap   :      5917 MB

    Max Processes  :         7
    Max Threads    :        71

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
193
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 193
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 193: processing genes 17310 - 17399
Calculating significance of each gene.
Using projection method.
17310	ZBBX	4.269954e-02
17311	ZBED2	1.382521e-01
17312	ZBED4	3.107774e-01
17313	ZBP1	7.470342e-03
17314	ZBTB1	3.774594e-01
17315	ZBTB10	1
17316	ZBTB11	7.788439e-01
17317	ZBTB12	1
17318	ZBTB16	1.343798e-01
17319	ZBTB17	9.833611e-01
17320	ZBTB2	1
17321	ZBTB20	6.045051e-01
17322	ZBTB22	9.670924e-01
17323	ZBTB24	1.598739e-01
17324	ZBTB25	6.118576e-01
17325	ZBTB26	7.012042e-02
17326	ZBTB3	8.095604e-01
17327	ZBTB32	2.354542e-01
17328	ZBTB33	9.647157e-02
17329	ZBTB34	7.542296e-01
17330	ZBTB37	7.177747e-01
17331	ZBTB38	9.807922e-01
17332	ZBTB39	5.868889e-01
17333	ZBTB4	8.566926e-01
17334	ZBTB40	8.633226e-01
17335	ZBTB41	1.457799e-01
17336	ZBTB43	7.385615e-01
17337	ZBTB44	4.797019e-01
17338	ZBTB45	1
17339	ZBTB46	6.339922e-01
17340	ZBTB47	1
17341	ZBTB48	9.627641e-01
17342	ZBTB49	9.790528e-01
17343	ZBTB5	9.434021e-01
17344	ZBTB6	5.544011e-01
17345	ZBTB7A	4.186161e-01
17346	ZBTB7B	7.961438e-01
17347	ZBTB7C	1.832539e-01
17348	ZBTB8A	9.039506e-01
17349	ZBTB8OS	1
17350	ZBTB9	1
17351	ZC3H10	8.022568e-01
17352	ZC3H11A	5.212690e-01
17353	ZC3H12A	5.662989e-01
17354	ZC3H12B	4.383700e-01
17355	ZC3H12C	7.201076e-02
17356	ZC3H12D	7.125427e-01
17357	ZC3H13	5.805679e-06
17358	ZC3H14	6.585212e-01
17359	ZC3H15	1.996206e-01
17360	ZC3H18	2.454527e-01
17361	ZC3H3	1
17362	ZC3H4	8.363699e-01
17363	ZC3H6	4.193240e-01
17364	ZC3H7A	9.943608e-01
In gene ZC3H7B the following bins exceed PROBCAP:
    COAD-AA-3678	categ 6	N = 3022    n = 1	mu =   2.96e-07
17365	ZC3H7B	4.415900e-01
17366	ZC3H8	4.571074e-01
17367	ZC3HAV1	6.301253e-01
17368	ZC3HAV1L	4.969439e-01
17369	ZC3HC1	9.576303e-02
17370	ZC4H2	5.259994e-02
17371	ZCCHC10	1
17372	ZCCHC11	6.437630e-01
17373	ZCCHC12	4.924814e-01
17374	ZCCHC13	1
17375	ZCCHC14	4.509860e-01
17376	ZCCHC16	1.148131e-01
17377	ZCCHC17	2.510994e-01
17378	ZCCHC2	7.605481e-01
17379	ZCCHC24	1.026554e-01
17380	ZCCHC3	4.642032e-01
17381	ZCCHC4	5.732205e-01
17382	ZCCHC5	7.625507e-03
17383	ZCCHC6	4.409356e-02
17384	ZCCHC7	7.849545e-01
17385	ZCCHC8	3.454916e-01
17386	ZCCHC9	1.474142e-01
17387	ZCRB1	4.978598e-01
17388	ZCWPW1	8.900760e-01
17389	ZCWPW2	6.693176e-05
17390	ZDBF2	7.712399e-02
17391	ZDHHC1	7.310935e-01
17392	ZDHHC11	1
17393	ZDHHC12	1
17394	ZDHHC13	1
17395	ZDHHC14	1.229297e-01
17396	ZDHHC15	2.074592e-02
17397	ZDHHC16	3.858379e-01
17398	ZDHHC17	7.343470e-01
17399	ZDHHC18	6.870762e-01
Done

Running MutSig 2:
Scatter job 193: processing genes 17310 - 17399
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZDBF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.564886e-02	ci left: 1.368792e-01	ci right 1.507290e-01	k: 1437	n:10000
Cons ci ratio: 9.100344e-02	ci left: 1.493316e-01	ci right 1.636692e-01	k: 1564	n:10000
KS ci ratio: 8.475817e-02	ci left: 1.686795e-01	ci right 1.837096e-01	k: 1761	n:10000
ZDBF2   10000 perm   3 sec   (3651 perm/sec)   p_kst 1.761000e-01   p_cons 1.564000e-01   p_joint 1.437000e-01

Outputting figure to mutsig2_images.part000000000193/ZDBF2.31_7077_10000_0.1761_0.1564_0.1437.png
                gene_name: ZDBF2
               theta_stop: 0.096 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 2 percent done.
ZC3H13
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.115002e-02	ci left: 6.032715e-01	ci right 6.224627e-01	k: 6129	n:10000
Cons ci ratio: 5.369191e-02	ci left: 3.382620e-01	ci right 3.570268e-01	k: 3476	n:10000
KS ci ratio: 3.920196e-02	ci left: 4.900514e-01	ci right 5.097486e-01	k: 4999	n:10000
ZC3H13   10000 perm   3 sec   (3838 perm/sec)   p_kst 4.999000e-01   p_cons 3.476000e-01   p_joint 6.129000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H13.26_4759_10000_0.4999_0.3476_0.6129.png
                gene_name: ZC3H13
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 3 percent done.
ZC3H12C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.639973e-02	ci left: 1.632741e-01	ci right 1.781182e-01	k: 1706	n:10000
Cons ci ratio: 1.623245e-01	ci left: 5.061180e-02	ci right 5.964956e-02	k: 550	n:10000
KS ci ratio: 2.266192e-02	ci left: 7.408856e-01	ci right 7.579689e-01	k: 7495	n:10000
ZC3H12C   10000 perm   2 sec   (4001 perm/sec)   p_kst 7.495000e-01   p_cons 5.500000e-02   p_joint 1.706000e-01

Joint ci ratio: 6.475532e-02	ci left: 1.498124e-01	ci right 1.598881e-01	k: 3096	n:20000
Cons ci ratio: 1.147833e-01	ci left: 5.192892e-02	ci right 5.830119e-02	k: 1101	n:20000
KS ci ratio: 1.613974e-02	ci left: 7.407129e-01	ci right 7.528153e-01	k: 14936	n:20000
ZC3H12C   20000 perm   5 sec   (4086 perm/sec)   p_kst 7.468000e-01   p_cons 5.505000e-02   p_joint 1.548000e-01

Joint ci ratio: 4.930447e-02	ci left: 1.697251e-01	ci right 1.783381e-01	k: 5220	n:30000
Cons ci ratio: 9.475660e-02	ci left: 5.140387e-02	ci right 5.654961e-02	k: 1618	n:30000
KS ci ratio: 1.419628e-02	ci left: 7.125019e-01	ci right 7.227226e-01	k: 21529	n:30000
ZC3H12C   30000 perm   7 sec   (4228 perm/sec)   p_kst 7.176333e-01   p_cons 5.393333e-02   p_joint 1.740000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H12C.10_2676_30000_0.71763_0.053933_0.174.png
                gene_name: ZC3H12C
               theta_stop: 0.095 
                    nperm: 30000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.051 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 5 percent done.
ZCCHC11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.558433e-01	ci left: 5.484605e-02	ci right 6.421259e-02	k: 594	n:10000
Cons ci ratio: 3.383534e-02	ci left: 5.632351e-01	ci right 5.827224e-01	k: 5730	n:10000
KS ci ratio: 2.663449e-01	ci left: 1.837333e-02	ci right 2.411031e-02	k: 211	n:10000
ZCCHC11   10000 perm   2 sec   (4669 perm/sec)   p_kst 2.110000e-02   p_cons 5.730000e-01   p_joint 5.940000e-02

Joint ci ratio: 1.316446e-01	ci left: 3.964911e-02	ci right 4.528489e-02	k: 848	n:20000
Cons ci ratio: 2.401965e-02	ci left: 5.642060e-01	ci right 5.779733e-01	k: 11422	n:20000
KS ci ratio: 1.841662e-01	ci left: 2.010730e-02	ci right 2.423325e-02	k: 442	n:20000
ZCCHC11   20000 perm   5 sec   (4342 perm/sec)   p_kst 2.210000e-02   p_cons 5.711000e-01   p_joint 4.240000e-02

Joint ci ratio: 9.251276e-02	ci left: 5.384851e-02	ci right 5.910446e-02	k: 1693	n:30000
Cons ci ratio: 1.875552e-02	ci left: 5.872483e-01	ci right 5.984003e-01	k: 17785	n:30000
KS ci ratio: 1.488334e-01	ci left: 2.091575e-02	ci right 2.431090e-02	k: 677	n:30000
ZCCHC11   30000 perm   7 sec   (4188 perm/sec)   p_kst 2.256667e-02   p_cons 5.928333e-01   p_joint 5.643333e-02

Joint ci ratio: 8.847936e-02	ci left: 4.470170e-02	ci right 4.886442e-02	k: 1870	n:40000
Cons ci ratio: 1.623730e-02	ci left: 5.881665e-01	ci right 5.978200e-01	k: 23720	n:40000
KS ci ratio: 1.309083e-01	ci left: 2.048801e-02	ci right 2.338197e-02	k: 876	n:40000
ZCCHC11   40000 perm   10 sec   (4099 perm/sec)   p_kst 2.190000e-02   p_cons 5.930000e-01   p_joint 4.675000e-02

Joint ci ratio: 8.594928e-02	ci left: 3.822078e-02	ci right 4.167290e-02	k: 1996	n:50000
Cons ci ratio: 1.455387e-02	ci left: 5.876569e-01	ci right 5.962924e-01	k: 29599	n:50000
KS ci ratio: 1.169383e-01	ci left: 2.069324e-02	ci right 2.328267e-02	k: 1098	n:50000
ZCCHC11   50000 perm   12 sec   (4035 perm/sec)   p_kst 2.196000e-02   p_cons 5.919800e-01   p_joint 3.992000e-02

Joint ci ratio: 7.947485e-02	ci left: 3.741590e-02	ci right 4.052890e-02	k: 2337	n:60000
Cons ci ratio: 1.331237e-02	ci left: 5.870701e-01	ci right 5.949544e-01	k: 35461	n:60000
KS ci ratio: 1.069490e-01	ci left: 2.072753e-02	ci right 2.308570e-02	k: 1313	n:60000
ZCCHC11   60000 perm   15 sec   (3958 perm/sec)   p_kst 2.188333e-02   p_cons 5.910167e-01   p_joint 3.895000e-02

Joint ci ratio: 7.367323e-02	ci left: 3.743752e-02	ci right 4.031515e-02	k: 2720	n:70000
Cons ci ratio: 1.232094e-02	ci left: 5.875187e-01	ci right 5.948166e-01	k: 41382	n:70000
KS ci ratio: 9.881808e-02	ci left: 2.089820e-02	ci right 2.308453e-02	k: 1538	n:70000
ZCCHC11   70000 perm   18 sec   (3899 perm/sec)   p_kst 2.197143e-02   p_cons 5.911714e-01   p_joint 3.885714e-02

Outputting figure to mutsig2_images.part000000000193/ZCCHC11.10_5054_70000_0.021971_0.59117_0.038857.png
                gene_name: ZCCHC11
               theta_stop: 0.099 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.021 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.59 
                  p_joint: 0.039 
     ci_joint_bounds_left: 0.037 
    ci_joint_bounds_right: 0.040 

Current progress: 7 percent done.
ZBTB41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.451724e-02	ci left: 7.098755e-01	ci right 7.275970e-01	k: 7188	n:10000
Cons ci ratio: 2.819591e-02	ci left: 6.496136e-01	ci right 6.682937e-01	k: 6590	n:10000
KS ci ratio: 4.453122e-02	ci left: 4.267492e-01	ci right 4.462878e-01	k: 4365	n:10000
ZBTB41   10000 perm   2 sec   (5410 perm/sec)   p_kst 4.365000e-01   p_cons 6.590000e-01   p_joint 7.188000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB41.9_2770_10000_0.4365_0.659_0.7188.png
                gene_name: ZBTB41
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 8 percent done.
ZCCHC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.216112e-02	ci left: 7.492789e-01	ci right 7.661707e-01	k: 7578	n:10000
Cons ci ratio: 5.169352e-02	ci left: 3.555546e-01	ci right 3.745241e-01	k: 3650	n:10000
KS ci ratio: 3.564690e-02	ci left: 5.374815e-01	ci right 5.570909e-01	k: 5473	n:10000
ZCCHC6   10000 perm   2 sec   (4755 perm/sec)   p_kst 5.473000e-01   p_cons 3.650000e-01   p_joint 7.578000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC6.9_4592_10000_0.5473_0.365_0.7578.png
                gene_name: ZCCHC6
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 10 percent done.
ZBED4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.420760e-02	ci left: 1.705475e-01	ci right 1.856405e-01	k: 1780	n:10000
Cons ci ratio: 5.209730e-02	ci left: 3.519757e-01	ci right 3.709051e-01	k: 3614	n:10000
KS ci ratio: 1.177263e-01	ci left: 9.389515e-02	ci right 1.057391e-01	k: 997	n:10000
ZBED4   10000 perm   2 sec   (5231 perm/sec)   p_kst 9.970000e-02   p_cons 3.614000e-01   p_joint 1.780000e-01

Joint ci ratio: 5.565396e-02	ci left: 1.931890e-01	ci right 2.042987e-01	k: 3974	n:20000
Cons ci ratio: 3.748126e-02	ci left: 3.468713e-01	ci right 3.601713e-01	k: 7070	n:20000
KS ci ratio: 8.260454e-02	ci left: 9.700431e-02	ci right 1.054120e-01	k: 2023	n:20000
ZBED4   20000 perm   4 sec   (4758 perm/sec)   p_kst 1.011500e-01   p_cons 3.535000e-01   p_joint 1.987000e-01

Outputting figure to mutsig2_images.part000000000193/ZBED4.8_3520_20000_0.10115_0.3535_0.1987.png
                gene_name: ZBED4
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.097 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 11 percent done.
ZBP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.058784e-02	ci left: 2.273104e-01	ci right 2.440439e-01	k: 2356	n:10000
Cons ci ratio: 5.993563e-02	ci left: 2.905320e-01	ci right 3.085849e-01	k: 2995	n:10000
KS ci ratio: 8.618673e-02	ci left: 1.639619e-01	ci right 1.788300e-01	k: 1713	n:10000
ZBP1   10000 perm   2 sec   (5770 perm/sec)   p_kst 1.713000e-01   p_cons 2.995000e-01   p_joint 2.356000e-01

Outputting figure to mutsig2_images.part000000000193/ZBP1.8_1399_10000_0.1713_0.2995_0.2356.png
                gene_name: ZBP1
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.24 

Current progress: 13 percent done.
ZC3H18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.474777e-02	ci left: 7.060407e-01	ci right 7.238339e-01	k: 7150	n:10000
Cons ci ratio: 1.568038e-02	ci left: 8.551867e-01	ci right 8.688017e-01	k: 8621	n:10000
KS ci ratio: 4.750450e-02	ci left: 3.953575e-01	ci right 4.146978e-01	k: 4050	n:10000
ZC3H18   10000 perm   2 sec   (5262 perm/sec)   p_kst 4.050000e-01   p_cons 8.621000e-01   p_joint 7.150000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H18.8_2930_10000_0.405_0.8621_0.715.png
                gene_name: ZC3H18
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 15 percent done.
ZC3H6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.195093e-02	ci left: 3.532680e-01	ci right 3.722120e-01	k: 3627	n:10000
Cons ci ratio: 9.375324e-02	ci left: 1.417796e-01	ci right 1.558256e-01	k: 1487	n:10000
KS ci ratio: 6.714328e-02	ci left: 2.455898e-01	ci right 2.627536e-01	k: 2541	n:10000
ZC3H6   10000 perm   2 sec   (5416 perm/sec)   p_kst 2.541000e-01   p_cons 1.487000e-01   p_joint 3.627000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H6.8_3618_10000_0.2541_0.1487_0.3627.png
                gene_name: ZC3H6
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 16 percent done.
ZBBX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.599129e-02	ci left: 6.854671e-01	ci right 7.036194e-01	k: 6946	n:10000
Cons ci ratio: 3.986605e-02	ci left: 4.816553e-01	ci right 5.013497e-01	k: 4915	n:10000
KS ci ratio: 3.981027e-02	ci left: 4.823548e-01	ci right 5.020497e-01	k: 4922	n:10000
ZBBX   10000 perm   2 sec   (6288 perm/sec)   p_kst 4.922000e-01   p_cons 4.915000e-01   p_joint 6.946000e-01

Outputting figure to mutsig2_images.part000000000193/ZBBX.7_2475_10000_0.4922_0.4915_0.6946.png
                gene_name: ZBBX
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.70 

Current progress: 18 percent done.
ZBTB16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.147477e-01	ci left: 9.847268e-02	ci right 1.105588e-01	k: 1044	n:10000
Cons ci ratio: 7.866854e-02	ci left: 1.910164e-01	ci right 2.067594e-01	k: 1988	n:10000
KS ci ratio: 1.435388e-01	ci left: 6.439839e-02	ci right 7.445420e-02	k: 693	n:10000
ZBTB16   10000 perm   2 sec   (5926 perm/sec)   p_kst 6.930000e-02   p_cons 1.988000e-01   p_joint 1.044000e-01

Joint ci ratio: 9.311361e-02	ci left: 7.759738e-02	ci right 8.522484e-02	k: 1627	n:20000
Cons ci ratio: 5.259039e-02	ci left: 2.116503e-01	ci right 2.231319e-01	k: 4347	n:20000
KS ci ratio: 1.029821e-01	ci left: 6.406102e-02	ci right 7.106534e-02	k: 1350	n:20000
ZBTB16   20000 perm   4 sec   (5242 perm/sec)   p_kst 6.750000e-02   p_cons 2.173500e-01   p_joint 8.135000e-02

Joint ci ratio: 6.687233e-02	ci left: 9.931964e-02	ci right 1.062242e-01	k: 3082	n:30000
Cons ci ratio: 4.288542e-02	ci left: 2.131402e-01	ci right 2.225145e-01	k: 6534	n:30000
KS ci ratio: 8.334871e-02	ci left: 6.579756e-02	ci right 7.155298e-02	k: 2059	n:30000
ZBTB16   30000 perm   6 sec   (5040 perm/sec)   p_kst 6.863333e-02   p_cons 2.178000e-01   p_joint 1.027333e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB16.7_2046_30000_0.068633_0.2178_0.10273.png
                gene_name: ZBTB16
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.069 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.11 

Current progress: 20 percent done.
ZC3HC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.012206e-02	ci left: 4.784575e-01	ci right 4.981493e-01	k: 4883	n:10000
Cons ci ratio: 8.232947e-02	ci left: 1.771369e-01	ci right 1.924471e-01	k: 1847	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ZC3HC1   10000 perm   2 sec   (6151 perm/sec)   p_kst 1   p_cons 1.847000e-01   p_joint 4.883000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3HC1.7_1549_10000_1_0.1847_0.4883.png
                gene_name: ZC3HC1
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 21 percent done.
ZCWPW2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.281605e-02	ci left: 5.781784e-01	ci right 5.975704e-01	k: 5879	n:10000
Cons ci ratio: 4.182965e-02	ci left: 4.576816e-01	ci right 4.773374e-01	k: 4675	n:10000
KS ci ratio: 4.411732e-02	ci left: 4.313368e-01	ci right 4.508976e-01	k: 4411	n:10000
ZCWPW2   10000 perm   2 sec   (5822 perm/sec)   p_kst 4.411000e-01   p_cons 4.675000e-01   p_joint 5.879000e-01

Outputting figure to mutsig2_images.part000000000193/ZCWPW2.7_1103_10000_0.4411_0.4675_0.5879.png
                gene_name: ZCWPW2
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 23 percent done.
ZBTB11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.320203e-02	ci left: 1.432503e-01	ci right 1.573541e-01	k: 1502	n:10000
Cons ci ratio: 4.189691e-02	ci left: 4.568828e-01	ci right 4.765366e-01	k: 4667	n:10000
KS ci ratio: 1.234410e-01	ci left: 8.591861e-02	ci right 9.732058e-02	k: 915	n:10000
ZBTB11   10000 perm   2 sec   (5464 perm/sec)   p_kst 9.150000e-02   p_cons 4.667000e-01   p_joint 1.502000e-01

Joint ci ratio: 7.216866e-02	ci left: 1.238914e-01	ci right 1.332169e-01	k: 2570	n:20000
Cons ci ratio: 3.014189e-02	ci left: 4.512263e-01	ci right 4.650859e-01	k: 9163	n:20000
KS ci ratio: 8.873490e-02	ci left: 8.494170e-02	ci right 9.287829e-02	k: 1777	n:20000
ZBTB11   20000 perm   4 sec   (5029 perm/sec)   p_kst 8.885000e-02   p_cons 4.581500e-01   p_joint 1.285000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB11.6_3206_20000_0.08885_0.45815_0.1285.png
                gene_name: ZBTB11
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 25 percent done.
ZBTB24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.864930e-02	ci left: 4.971503e-01	ci right 5.168456e-01	k: 5070	n:10000
Cons ci ratio: 6.898055e-02	ci left: 2.356076e-01	ci right 2.525417e-01	k: 2440	n:10000
KS ci ratio: 5.585553e-02	ci left: 3.206853e-01	ci right 3.392138e-01	k: 3299	n:10000
ZBTB24   10000 perm   2 sec   (5468 perm/sec)   p_kst 3.299000e-01   p_cons 2.440000e-01   p_joint 5.070000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB24.6_2168_10000_0.3299_0.244_0.507.png
                gene_name: ZBTB24
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 26 percent done.
ZBTB32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.225664e-02	ci left: 2.749777e-01	ci right 2.927484e-01	k: 2838	n:10000
Cons ci ratio: 4.129592e-02	ci left: 4.640723e-01	ci right 4.837429e-01	k: 4739	n:10000
KS ci ratio: 6.920559e-02	ci left: 2.344220e-01	ci right 2.513280e-01	k: 2428	n:10000
ZBTB32   10000 perm   2 sec   (6255 perm/sec)   p_kst 2.428000e-01   p_cons 4.739000e-01   p_joint 2.838000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB32.6_1484_10000_0.2428_0.4739_0.2838.png
                gene_name: ZBTB32
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 28 percent done.
ZBTB7C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.032889e-02	ci left: 6.159285e-01	ci right 6.349984e-01	k: 6255	n:10000
Cons ci ratio: 2.926994e-02	ci left: 6.325134e-01	ci right 6.514038e-01	k: 6420	n:10000
KS ci ratio: 6.471812e-02	ci left: 2.596344e-01	ci right 2.771008e-01	k: 2683	n:10000
ZBTB7C   10000 perm   2 sec   (6300 perm/sec)   p_kst 2.683000e-01   p_cons 6.420000e-01   p_joint 6.255000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB7C.6_1868_10000_0.2683_0.642_0.6255.png
                gene_name: ZBTB7C
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.63 

Current progress: 30 percent done.
ZBTB20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.589212e-02	ci left: 5.340764e-01	ci right 5.536980e-01	k: 5439	n:10000
Cons ci ratio: 2.677805e-02	ci left: 6.725690e-01	ci right 6.909251e-01	k: 6818	n:10000
KS ci ratio: 6.635571e-02	ci left: 2.500393e-01	ci right 2.673015e-01	k: 2586	n:10000
ZBTB20   10000 perm   2 sec   (5750 perm/sec)   p_kst 2.586000e-01   p_cons 6.818000e-01   p_joint 5.439000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB20.5_2242_10000_0.2586_0.6818_0.5439.png
                gene_name: ZBTB20
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 31 percent done.
ZBTB33
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.560606e-02	ci left: 6.918185e-01	ci right 7.098644e-01	k: 7009	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ZBTB33   10000 perm   2 sec   (5954 perm/sec)   p_kst 1   p_cons 7.009000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZBTB33.5_2023_10000_1_0.7009_1.png
                gene_name: ZBTB33
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
ZBTB46
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.753367e-01	ci left: 4.341336e-02	ci right 5.185268e-02	k: 475	n:10000
Cons ci ratio: 8.567447e-02	ci left: 1.656325e-01	ci right 1.805584e-01	k: 1730	n:10000
KS ci ratio: 2.696112e-01	ci left: 1.790635e-02	ci right 2.357766e-02	k: 206	n:10000
ZBTB46   10000 perm   1 sec   (7011 perm/sec)   p_kst 2.060000e-02   p_cons 1.730000e-01   p_joint 4.750000e-02

Joint ci ratio: 1.371344e-01	ci left: 3.655254e-02	ci right 4.198245e-02	k: 784	n:20000
Cons ci ratio: 5.895144e-02	ci left: 1.756857e-01	ci right 1.864072e-01	k: 3620	n:20000
KS ci ratio: 1.899469e-01	ci left: 1.886701e-02	ci right 2.287398e-02	k: 416	n:20000
ZBTB46   20000 perm   3 sec   (6113 perm/sec)   p_kst 2.080000e-02   p_cons 1.810000e-01   p_joint 3.920000e-02

Joint ci ratio: 1.102047e-01	ci left: 3.823235e-02	ci right 4.272387e-02	k: 1213	n:30000
Cons ci ratio: 4.889679e-02	ci left: 1.721017e-01	ci right 1.807611e-01	k: 5292	n:30000
KS ci ratio: 1.546509e-01	ci left: 1.934319e-02	ci right 2.261716e-02	k: 628	n:30000
ZBTB46   30000 perm   5 sec   (5771 perm/sec)   p_kst 2.093333e-02   p_cons 1.764000e-01   p_joint 4.043333e-02

Joint ci ratio: 1.038023e-01	ci left: 3.263531e-02	ci right 3.623269e-02	k: 1376	n:40000
Cons ci ratio: 4.152779e-02	ci left: 1.783783e-01	ci right 1.859679e-01	k: 7286	n:40000
KS ci ratio: 1.347274e-01	ci left: 1.932710e-02	ci right 2.214308e-02	k: 828	n:40000
ZBTB46   40000 perm   7 sec   (5581 perm/sec)   p_kst 2.070000e-02   p_cons 1.821500e-01   p_joint 3.440000e-02

Joint ci ratio: 1.234086e-01	ci left: 1.855805e-02	ci right 2.101815e-02	k: 988	n:50000
Cons ci ratio: 3.710069e-02	ci left: 1.791229e-01	ci right 1.859140e-01	k: 9125	n:50000
KS ci ratio: 1.202231e-01	ci left: 1.956696e-02	ci right 2.208911e-02	k: 1040	n:50000
ZBTB46   50000 perm   9 sec   (5437 perm/sec)   p_kst 2.080000e-02   p_cons 1.825000e-01   p_joint 1.976000e-02

Joint ci ratio: 1.038785e-01	ci left: 2.197775e-02	ci right 2.440201e-02	k: 1390	n:60000
Cons ci ratio: 3.391781e-02	ci left: 1.789860e-01	ci right 1.851781e-01	k: 10924	n:60000
KS ci ratio: 1.093112e-01	ci left: 1.983515e-02	ci right 2.214484e-02	k: 1258	n:60000
ZBTB46   60000 perm   11 sec   (5296 perm/sec)   p_kst 2.096667e-02   p_cons 1.820667e-01   p_joint 2.316667e-02

Joint ci ratio: 1.070370e-01	ci left: 1.779279e-02	ci right 1.981880e-02	k: 1315	n:70000
Cons ci ratio: 3.145438e-02	ci left: 1.787218e-01	ci right 1.844475e-01	k: 12710	n:70000
KS ci ratio: 1.010563e-01	ci left: 1.997843e-02	ci right 2.211868e-02	k: 1472	n:70000
ZBTB46   70000 perm   13 sec   (5190 perm/sec)   p_kst 2.102857e-02   p_cons 1.815714e-01   p_joint 1.878571e-02

Joint ci ratio: 1.046467e-01	ci left: 1.633470e-02	ci right 1.815055e-02	k: 1378	n:80000
Cons ci ratio: 2.935607e-02	ci left: 1.795802e-01	ci right 1.849429e-01	k: 14580	n:80000
KS ci ratio: 9.431321e-02	ci left: 2.013967e-02	ci right 2.214526e-02	k: 1690	n:80000
ZBTB46   80000 perm   16 sec   (5091 perm/sec)   p_kst 2.112500e-02   p_cons 1.822500e-01   p_joint 1.722500e-02

Joint ci ratio: 7.926509e-02	ci left: 2.540590e-02	ci right 2.751366e-02	k: 2380	n:90000
Cons ci ratio: 2.768092e-02	ci left: 1.796939e-01	ci right 1.847488e-01	k: 16399	n:90000
KS ci ratio: 8.873790e-02	ci left: 2.027966e-02	ci right 2.217360e-02	k: 1909	n:90000
ZBTB46   90000 perm   18 sec   (5001 perm/sec)   p_kst 2.121111e-02   p_cons 1.822111e-01   p_joint 2.644444e-02

Outputting figure to mutsig2_images.part000000000193/ZBTB46.5_1786_90000_0.021211_0.18221_0.026444.png
                gene_name: ZBTB46
               theta_stop: 0.089 
                    nperm: 90000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.026 
     ci_joint_bounds_left: 0.025 
    ci_joint_bounds_right: 0.028 

Current progress: 34 percent done.
ZC3H7B
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside exons of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.369981e-01	ci left: 3.885975e-03	ci right 6.813584e-03	k: 52	n:10000
Cons ci ratio: 3.415481e-01	ci left: 1.078106e-02	ci right 1.530921e-02	k: 129	n:10000
KS ci ratio: 2.305278e-01	ci left: 2.485465e-02	ci right 3.142409e-02	k: 280	n:10000
ZC3H7B   10000 perm   2 sec   (5790 perm/sec)   p_kst 2.800000e-02   p_cons 1.290000e-02   p_joint 5.200000e-03

Joint ci ratio: 4.267974e-01	ci left: 3.306767e-03	ci right 5.141989e-03	k: 83	n:20000
Cons ci ratio: 2.401172e-01	ci left: 1.157027e-02	ci right 1.477358e-02	k: 262	n:20000
KS ci ratio: 1.618303e-01	ci left: 2.618962e-02	ci right 3.084880e-02	k: 569	n:20000
ZC3H7B   20000 perm   4 sec   (5325 perm/sec)   p_kst 2.845000e-02   p_cons 1.310000e-02   p_joint 4.150000e-03

Joint ci ratio: 4.376773e-01	ci left: 2.085372e-03	ci right 3.280854e-03	k: 79	n:30000
Cons ci ratio: 1.982318e-01	ci left: 1.159035e-02	ci right 1.417193e-02	k: 385	n:30000
KS ci ratio: 1.339189e-01	ci left: 2.590436e-02	ci right 2.965451e-02	k: 832	n:30000
ZC3H7B   30000 perm   6 sec   (5116 perm/sec)   p_kst 2.773333e-02   p_cons 1.283333e-02   p_joint 2.633333e-03

Joint ci ratio: 2.807528e-01	ci left: 4.169580e-03	ci right 5.553808e-03	k: 193	n:40000
Cons ci ratio: 1.722973e-01	ci left: 1.167350e-02	ci right 1.389806e-02	k: 510	n:40000
KS ci ratio: 1.172137e-01	ci left: 2.560351e-02	ci right 2.881562e-02	k: 1087	n:40000
ZC3H7B   40000 perm   8 sec   (4963 perm/sec)   p_kst 2.717500e-02   p_cons 1.275000e-02   p_joint 4.825000e-03

Joint ci ratio: 1.679322e-01	ci left: 9.874175e-03	ci right 1.170329e-02	k: 538	n:50000
Cons ci ratio: 1.511105e-01	ci left: 1.227572e-02	ci right 1.430138e-02	k: 663	n:50000
KS ci ratio: 1.049982e-01	ci left: 2.569425e-02	ci right 2.856100e-02	k: 1355	n:50000
ZC3H7B   50000 perm   10 sec   (4851 perm/sec)   p_kst 2.710000e-02   p_cons 1.326000e-02   p_joint 1.076000e-02

Joint ci ratio: 1.765432e-01	ci left: 7.430194e-03	ci right 8.884650e-03	k: 488	n:60000
Cons ci ratio: 1.403565e-01	ci left: 1.193192e-02	ci right 1.374899e-02	k: 769	n:60000
KS ci ratio: 9.493042e-02	ci left: 2.632000e-02	ci right 2.895929e-02	k: 1657	n:60000
ZC3H7B   60000 perm   13 sec   (4755 perm/sec)   p_kst 2.761667e-02   p_cons 1.281667e-02   p_joint 8.133333e-03

Joint ci ratio: 1.823678e-01	ci left: 5.958990e-03	ci right 7.168173e-03	k: 458	n:70000
Cons ci ratio: 1.294592e-01	ci left: 1.209098e-02	ci right 1.377832e-02	k: 904	n:70000
KS ci ratio: 8.782635e-02	ci left: 2.645479e-02	ci right 2.889886e-02	k: 1936	n:70000
ZC3H7B   70000 perm   15 sec   (4670 perm/sec)   p_kst 2.765714e-02   p_cons 1.291429e-02   p_joint 6.542857e-03

Joint ci ratio: 1.360206e-01	ci left: 9.575678e-03	ci right 1.098518e-02	k: 821	n:80000
Cons ci ratio: 1.207018e-01	ci left: 1.222651e-02	ci right 1.380909e-02	k: 1040	n:80000
KS ci ratio: 8.193954e-02	ci left: 2.667169e-02	ci right 2.896272e-02	k: 2224	n:80000
ZC3H7B   80000 perm   17 sec   (4583 perm/sec)   p_kst 2.780000e-02   p_cons 1.300000e-02   p_joint 1.026250e-02

Joint ci ratio: 1.411235e-01	ci left: 7.899839e-03	ci right 9.109938e-03	k: 764	n:90000
Cons ci ratio: 1.133644e-01	ci left: 1.236732e-02	ci right 1.386430e-02	k: 1179	n:90000
KS ci ratio: 7.736672e-02	ci left: 2.665931e-02	ci right 2.881571e-02	k: 2495	n:90000
ZC3H7B   90000 perm   20 sec   (4495 perm/sec)   p_kst 2.772222e-02   p_cons 1.310000e-02   p_joint 8.488889e-03

Joint ci ratio: 1.280116e-01	ci left: 8.694978e-03	ci right 9.893743e-03	k: 928	n:100000
Cons ci ratio: 1.078019e-01	ci left: 1.234602e-02	ci right 1.376243e-02	k: 1304	n:100000
KS ci ratio: 7.349656e-02	ci left: 2.664245e-02	ci right 2.868507e-02	k: 2765	n:100000
ZC3H7B   100000 perm   23 sec   (4416 perm/sec)   p_kst 2.765000e-02   p_cons 1.304000e-02   p_joint 9.280000e-03

Joint ci ratio: 1.294075e-01	ci left: 7.737110e-03	ci right 8.816330e-03	k: 909	n:110000
Cons ci ratio: 1.024422e-01	ci left: 1.246297e-02	ci right 1.381743e-02	k: 1444	n:110000
KS ci ratio: 7.009521e-02	ci left: 2.667555e-02	ci right 2.862219e-02	k: 3040	n:110000
ZC3H7B   110000 perm   25 sec   (4345 perm/sec)   p_kst 2.763636e-02   p_cons 1.312727e-02   p_joint 8.263636e-03

Joint ci ratio: 1.611232e-01	ci left: 4.512754e-03	ci right 5.311461e-03	k: 588	n:120000
Cons ci ratio: 9.799795e-02	ci left: 1.251308e-02	ci right 1.381060e-02	k: 1578	n:120000
KS ci ratio: 6.715746e-02	ci left: 2.668036e-02	ci right 2.854256e-02	k: 3312	n:120000
ZC3H7B   120000 perm   28 sec   (4283 perm/sec)   p_kst 2.760000e-02   p_cons 1.315000e-02   p_joint 4.900000e-03

Joint ci ratio: 1.564220e-01	ci left: 4.431526e-03	ci right 5.190822e-03	k: 624	n:130000
Cons ci ratio: 9.331626e-02	ci left: 1.276697e-02	ci right 1.402411e-02	k: 1740	n:130000
KS ci ratio: 6.453284e-02	ci left: 2.670859e-02	ci right 2.849718e-02	k: 3587	n:130000
ZC3H7B   130000 perm   31 sec   (4212 perm/sec)   p_kst 2.759231e-02   p_cons 1.338462e-02   p_joint 4.800000e-03

Joint ci ratio: 1.277685e-01	ci left: 6.251678e-03	ci right 7.111803e-03	k: 934	n:140000
Cons ci ratio: 9.038525e-02	ci left: 1.265757e-02	ci right 1.386272e-02	k: 1855	n:140000
KS ci ratio: 6.222683e-02	ci left: 2.670587e-02	ci right 2.842806e-02	k: 3858	n:140000
ZC3H7B   140000 perm   34 sec   (4150 perm/sec)   p_kst 2.755714e-02   p_cons 1.325000e-02   p_joint 6.671429e-03

Joint ci ratio: 1.261777e-01	ci left: 5.989765e-03	ci right 6.802825e-03	k: 958	n:150000
Cons ci ratio: 8.742236e-02	ci left: 1.264809e-02	ci right 1.381084e-02	k: 1983	n:150000
KS ci ratio: 6.034719e-02	ci left: 2.653371e-02	ci right 2.819130e-02	k: 4103	n:150000
ZC3H7B   150000 perm   37 sec   (4076 perm/sec)   p_kst 2.735333e-02   p_cons 1.322000e-02   p_joint 6.386667e-03

Joint ci ratio: 1.225292e-01	ci left: 5.966625e-03	ci right 6.751424e-03	k: 1016	n:160000
Cons ci ratio: 8.459101e-02	ci left: 1.268320e-02	ci right 1.380954e-02	k: 2118	n:160000
KS ci ratio: 5.849691e-02	ci left: 2.650082e-02	ci right 2.810387e-02	k: 4367	n:160000
ZC3H7B   160000 perm   40 sec   (4022 perm/sec)   p_kst 2.729375e-02   p_cons 1.323750e-02   p_joint 6.350000e-03

Joint ci ratio: 1.438853e-01	ci left: 4.034190e-03	ci right 4.665250e-03	k: 738	n:170000
Cons ci ratio: 8.207343e-02	ci left: 1.269742e-02	ci right 1.378986e-02	k: 2250	n:170000
KS ci ratio: 5.664378e-02	ci left: 2.662332e-02	ci right 2.818109e-02	k: 4657	n:170000
ZC3H7B   170000 perm   43 sec   (3967 perm/sec)   p_kst 2.739412e-02   p_cons 1.323529e-02   p_joint 4.341176e-03

Joint ci ratio: 1.450905e-01	ci left: 3.745771e-03	ci right 4.337045e-03	k: 726	n:180000
Cons ci ratio: 7.968336e-02	ci left: 1.273773e-02	ci right 1.380025e-02	k: 2387	n:180000
KS ci ratio: 5.501920e-02	ci left: 2.667262e-02	ci right 2.818709e-02	k: 4936	n:180000
ZC3H7B   180000 perm   46 sec   (3915 perm/sec)   p_kst 2.742222e-02   p_cons 1.326111e-02   p_joint 4.033333e-03

Joint ci ratio: 1.409801e-01	ci left: 3.766845e-03	ci right 4.343185e-03	k: 769	n:190000
Cons ci ratio: 7.763096e-02	ci left: 1.272776e-02	ci right 1.376086e-02	k: 2515	n:190000
KS ci ratio: 5.360614e-02	ci left: 2.663939e-02	ci right 2.811192e-02	k: 5200	n:190000
ZC3H7B   190000 perm   49 sec   (3853 perm/sec)   p_kst 2.736842e-02   p_cons 1.323684e-02   p_joint 4.047368e-03

Joint ci ratio: 1.371157e-01	ci left: 3.790853e-03	ci right 4.353670e-03	k: 813	n:200000
Cons ci ratio: 7.557024e-02	ci left: 1.277307e-02	ci right 1.378111e-02	k: 2654	n:200000
KS ci ratio: 5.224752e-02	ci left: 2.665929e-02	ci right 2.809445e-02	k: 5474	n:200000
ZC3H7B   200000 perm   53 sec   (3802 perm/sec)   p_kst 2.737000e-02   p_cons 1.327000e-02   p_joint 4.065000e-03

Joint ci ratio: 1.368761e-01	ci left: 3.624111e-03	ci right 4.161154e-03	k: 816	n:210000
Cons ci ratio: 7.379933e-02	ci left: 1.276764e-02	ci right 1.375063e-02	k: 2783	n:210000
KS ci ratio: 5.107865e-02	ci left: 2.658367e-02	ci right 2.798180e-02	k: 5728	n:210000
ZC3H7B   210000 perm   56 sec   (3752 perm/sec)   p_kst 2.727619e-02   p_cons 1.325238e-02   p_joint 3.885714e-03

Joint ci ratio: 1.335651e-01	ci left: 3.639440e-03	ci right 4.164673e-03	k: 857	n:220000
Cons ci ratio: 7.215991e-02	ci left: 1.275849e-02	ci right 1.371804e-02	k: 2911	n:220000
KS ci ratio: 5.004077e-02	ci left: 2.645688e-02	ci right 2.781925e-02	k: 5969	n:220000
ZC3H7B   220000 perm   59 sec   (3703 perm/sec)   p_kst 2.713182e-02   p_cons 1.323182e-02   p_joint 3.895455e-03

Joint ci ratio: 1.450544e-01	ci left: 2.935573e-03	ci right 3.398827e-03	k: 727	n:230000
Cons ci ratio: 7.044918e-02	ci left: 1.281444e-02	ci right 1.375441e-02	k: 3054	n:230000
KS ci ratio: 4.889803e-02	ci left: 2.651752e-02	ci right 2.785095e-02	k: 6251	n:230000
ZC3H7B   230000 perm   63 sec   (3657 perm/sec)   p_kst 2.717826e-02   p_cons 1.327826e-02   p_joint 3.160870e-03

Joint ci ratio: 1.420615e-01	ci left: 2.937785e-03	ci right 3.391012e-03	k: 758	n:240000
Cons ci ratio: 6.899688e-02	ci left: 1.281272e-02	ci right 1.373242e-02	k: 3184	n:240000
KS ci ratio: 4.785275e-02	ci left: 2.654873e-02	ci right 2.785439e-02	k: 6527	n:240000
ZC3H7B   240000 perm   66 sec   (3610 perm/sec)   p_kst 2.719583e-02   p_cons 1.326667e-02   p_joint 3.158333e-03

Joint ci ratio: 1.214180e-01	ci left: 3.899824e-03	ci right 4.407777e-03	k: 1037	n:250000
Cons ci ratio: 6.774484e-02	ci left: 1.276807e-02	ci right 1.366727e-02	k: 3303	n:250000
KS ci ratio: 4.684700e-02	ci left: 2.660539e-02	ci right 2.788560e-02	k: 6810	n:250000
ZC3H7B   250000 perm   70 sec   (3564 perm/sec)   p_kst 2.724000e-02   p_cons 1.321200e-02   p_joint 4.148000e-03

Joint ci ratio: 1.327542e-01	ci left: 3.120369e-03	ci right 3.567739e-03	k: 868	n:260000
Cons ci ratio: 6.641127e-02	ci left: 1.278373e-02	ci right 1.366563e-02	k: 3437	n:260000
KS ci ratio: 4.594540e-02	ci left: 2.660852e-02	ci right 2.786359e-02	k: 7080	n:260000
ZC3H7B   260000 perm   74 sec   (3515 perm/sec)   p_kst 2.723077e-02   p_cons 1.321923e-02   p_joint 3.338462e-03

Joint ci ratio: 1.344811e-01	ci left: 2.926022e-03	ci right 3.351421e-03	k: 846	n:270000
Cons ci ratio: 6.522754e-02	ci left: 1.276924e-02	ci right 1.363385e-02	k: 3563	n:270000
KS ci ratio: 4.514130e-02	ci left: 2.655669e-02	ci right 2.778682e-02	k: 7335	n:270000
ZC3H7B   270000 perm   78 sec   (3471 perm/sec)   p_kst 2.716667e-02   p_cons 1.319630e-02   p_joint 3.133333e-03

Joint ci ratio: 1.356175e-01	ci left: 2.773196e-03	ci right 3.180057e-03	k: 832	n:280000
Cons ci ratio: 6.409613e-02	ci left: 1.275943e-02	ci right 1.360783e-02	k: 3690	n:280000
KS ci ratio: 4.430903e-02	ci left: 2.659000e-02	ci right 2.779838e-02	k: 7613	n:280000
ZC3H7B   280000 perm   82 sec   (3414 perm/sec)   p_kst 2.718929e-02   p_cons 1.317857e-02   p_joint 2.971429e-03

Joint ci ratio: 1.357881e-01	ci left: 2.670896e-03	ci right 3.063281e-03	k: 830	n:290000
Cons ci ratio: 6.297149e-02	ci left: 1.277079e-02	ci right 1.360450e-02	k: 3823	n:290000
KS ci ratio: 4.360074e-02	ci left: 2.652568e-02	ci right 2.771138e-02	k: 7863	n:290000
ZC3H7B   290000 perm   86 sec   (3372 perm/sec)   p_kst 2.711379e-02   p_cons 1.318276e-02   p_joint 2.862069e-03

Joint ci ratio: 1.234450e-01	ci left: 3.143146e-03	ci right 3.559873e-03	k: 1004	n:300000
Cons ci ratio: 6.169897e-02	ci left: 1.286685e-02	ci right 1.368926e-02	k: 3982	n:300000
KS ci ratio: 4.281161e-02	ci left: 2.660433e-02	ci right 2.777150e-02	k: 8155	n:300000
ZC3H7B   300000 perm   90 sec   (3332 perm/sec)   p_kst 2.718333e-02   p_cons 1.327333e-02   p_joint 3.346667e-03

Joint ci ratio: 1.254072e-01	ci left: 2.944848e-03	ci right 3.341950e-03	k: 973	n:310000
Cons ci ratio: 6.066406e-02	ci left: 1.288697e-02	ci right 1.369636e-02	k: 4119	n:310000
KS ci ratio: 4.208687e-02	ci left: 2.664935e-02	ci right 2.779822e-02	k: 8438	n:310000
ZC3H7B   310000 perm   94 sec   (3294 perm/sec)   p_kst 2.721935e-02   p_cons 1.328710e-02   p_joint 3.138710e-03

Joint ci ratio: 1.067816e-01	ci left: 3.969742e-03	ci right 4.420560e-03	k: 1341	n:320000
Cons ci ratio: 5.989379e-02	ci left: 1.281357e-02	ci right 1.360778e-02	k: 4226	n:320000
KS ci ratio: 4.129564e-02	ci left: 2.682164e-02	ci right 2.795569e-02	k: 8763	n:320000
ZC3H7B   320000 perm   98 sec   (3259 perm/sec)   p_kst 2.738437e-02   p_cons 1.320625e-02   p_joint 4.190625e-03

Joint ci ratio: 1.051489e-01	ci left: 3.973346e-03	ci right 4.417248e-03	k: 1383	n:330000
Cons ci ratio: 5.893888e-02	ci left: 1.283726e-02	ci right 1.361981e-02	k: 4364	n:330000
KS ci ratio: 4.066022e-02	ci left: 2.683666e-02	ci right 2.795347e-02	k: 9039	n:330000
ZC3H7B   330000 perm   102 sec   (3221 perm/sec)   p_kst 2.739091e-02   p_cons 1.322424e-02   p_joint 4.190909e-03

Joint ci ratio: 1.035889e-01	ci left: 3.976788e-03	ci right 4.414081e-03	k: 1425	n:340000
Cons ci ratio: 5.812642e-02	ci left: 1.281616e-02	ci right 1.358629e-02	k: 4487	n:340000
KS ci ratio: 4.005768e-02	ci left: 2.684510e-02	ci right 2.794533e-02	k: 9313	n:340000
ZC3H7B   340000 perm   107 sec   (3185 perm/sec)   p_kst 2.739118e-02   p_cons 1.319706e-02   p_joint 4.191176e-03

Joint ci ratio: 1.022362e-01	ci left: 3.968942e-03	ci right 4.399331e-03	k: 1463	n:350000
Cons ci ratio: 5.728375e-02	ci left: 1.282450e-02	ci right 1.358359e-02	k: 4620	n:350000
KS ci ratio: 3.945578e-02	ci left: 2.688713e-02	ci right 2.797214e-02	k: 9599	n:350000
ZC3H7B   350000 perm   111 sec   (3151 perm/sec)   p_kst 2.742571e-02   p_cons 1.320000e-02   p_joint 4.180000e-03

Joint ci ratio: 1.006663e-01	ci left: 3.983230e-03	ci right 4.408145e-03	k: 1509	n:360000
Cons ci ratio: 5.646466e-02	ci left: 1.283793e-02	ci right 1.358660e-02	k: 4755	n:360000
KS ci ratio: 3.889640e-02	ci left: 2.690493e-02	ci right 2.797492e-02	k: 9877	n:360000
ZC3H7B   360000 perm   115 sec   (3117 perm/sec)   p_kst 2.743611e-02   p_cons 1.320833e-02   p_joint 4.191667e-03

Joint ci ratio: 1.069321e-01	ci left: 3.425347e-03	ci right 3.814923e-03	k: 1338	n:370000
Cons ci ratio: 5.562213e-02	ci left: 1.287737e-02	ci right 1.361677e-02	k: 4900	n:370000
KS ci ratio: 3.839711e-02	ci left: 2.687099e-02	ci right 2.792562e-02	k: 10136	n:370000
ZC3H7B   370000 perm   120 sec   (3084 perm/sec)   p_kst 2.739459e-02   p_cons 1.324324e-02   p_joint 3.616216e-03

Joint ci ratio: 1.057161e-01	ci left: 3.414615e-03	ci right 3.798279e-03	k: 1369	n:380000
Cons ci ratio: 5.498210e-02	ci left: 1.283693e-02	ci right 1.356526e-02	k: 5015	n:380000
KS ci ratio: 3.789782e-02	ci left: 2.686500e-02	ci right 2.790538e-02	k: 10405	n:380000
ZC3H7B   380000 perm   124 sec   (3053 perm/sec)   p_kst 2.738158e-02   p_cons 1.319737e-02   p_joint 3.602632e-03

Joint ci ratio: 1.079580e-01	ci left: 3.187287e-03	ci right 3.553486e-03	k: 1313	n:390000
Cons ci ratio: 5.427797e-02	ci left: 1.283909e-02	ci right 1.355792e-02	k: 5146	n:390000
KS ci ratio: 3.740492e-02	ci left: 2.687719e-02	ci right 2.790421e-02	k: 10681	n:390000
ZC3H7B   390000 perm   129 sec   (3019 perm/sec)   p_kst 2.738718e-02   p_cons 1.319487e-02   p_joint 3.366667e-03

Joint ci ratio: 8.399961e-02	ci left: 5.187466e-03	ci right 5.644744e-03	k: 2165	n:400000
Cons ci ratio: 5.366723e-02	ci left: 1.280912e-02	ci right 1.351796e-02	k: 5264	n:400000
KS ci ratio: 3.696024e-02	ci left: 2.684673e-02	ci right 2.786013e-02	k: 10940	n:400000
ZC3H7B   400000 perm   134 sec   (2986 perm/sec)   p_kst 2.735000e-02   p_cons 1.316000e-02   p_joint 5.412500e-03

Outputting figure to mutsig2_images.part000000000193/ZC3H7B.4_3022_400000_0.02735_0.01316_0.0054125.png
                gene_name: ZC3H7B
               theta_stop: 0.084 
                    nperm: 400000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.027 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.013 
      ci_cons_bounds_left: 0.013 
     ci_cons_bounds_right: 0.014 
                  p_joint: 0.0054 
     ci_joint_bounds_left: 0.0052 
    ci_joint_bounds_right: 0.0056 

Current progress: 36 percent done.
ZCCHC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.073802e-02	ci left: 6.095991e-01	ci right 6.287314e-01	k: 6192	n:10000
Cons ci ratio: 2.447480e-02	ci left: 7.105819e-01	ci right 7.282901e-01	k: 7195	n:10000
KS ci ratio: 4.920140e-02	ci left: 3.786320e-01	ci right 3.978331e-01	k: 3882	n:10000
ZCCHC14   10000 perm   2 sec   (5777 perm/sec)   p_kst 3.882000e-01   p_cons 7.195000e-01   p_joint 6.192000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC14.5_2902_10000_0.3882_0.7195_0.6192.png
                gene_name: ZCCHC14
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 38 percent done.
ZCCHC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.092731e-02	ci left: 6.066862e-01	ci right 6.258460e-01	k: 6163	n:10000
Cons ci ratio: 4.316395e-02	ci left: 4.421108e-01	ci right 4.617172e-01	k: 4519	n:10000
KS ci ratio: 3.088156e-02	ci left: 6.073893e-01	ci right 6.265425e-01	k: 6170	n:10000
ZCCHC5   10000 perm   2 sec   (6525 perm/sec)   p_kst 6.170000e-01   p_cons 4.519000e-01   p_joint 6.163000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC5.5_1432_10000_0.617_0.4519_0.6163.png
                gene_name: ZCCHC5
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 39 percent done.
ZCCHC8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.135773e-02	ci left: 7.627374e-01	ci right 7.793044e-01	k: 7711	n:10000
Cons ci ratio: 5.740679e-02	ci left: 3.087773e-01	ci right 3.271288e-01	k: 3179	n:10000
KS ci ratio: 2.199211e-02	ci left: 7.521113e-01	ci right 7.689367e-01	k: 7606	n:10000
ZCCHC8   10000 perm   2 sec   (5682 perm/sec)   p_kst 7.606000e-01   p_cons 3.179000e-01   p_joint 7.711000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC8.5_2180_10000_0.7606_0.3179_0.7711.png
                gene_name: ZCCHC8
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.76 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 41 percent done.
ZDHHC15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.617512e-02	ci left: 5.301711e-01	ci right 5.498056e-01	k: 5400	n:10000
Cons ci ratio: 4.745527e-02	ci left: 3.958555e-01	ci right 4.151996e-01	k: 4055	n:10000
KS ci ratio: 4.319882e-02	ci left: 4.417117e-01	ci right 4.613165e-01	k: 4515	n:10000
ZDHHC15   10000 perm   2 sec   (6188 perm/sec)   p_kst 4.515000e-01   p_cons 4.055000e-01   p_joint 5.400000e-01

Outputting figure to mutsig2_images.part000000000193/ZDHHC15.5_1138_10000_0.4515_0.4055_0.54.png
                gene_name: ZDHHC15
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 43 percent done.
ZBTB4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.516717e-02	ci left: 6.990796e-01	ci right 7.169991e-01	k: 7081	n:10000
Cons ci ratio: 4.152048e-03	ci left: 9.867570e-01	ci right 9.909509e-01	k: 9890	n:10000
KS ci ratio: 4.323372e-02	ci left: 4.413126e-01	ci right 4.609159e-01	k: 4511	n:10000
ZBTB4   10000 perm   2 sec   (4995 perm/sec)   p_kst 4.511000e-01   p_cons 9.890000e-01   p_joint 7.081000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB4.4_3050_10000_0.4511_0.989_0.7081.png
                gene_name: ZBTB4
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.70 
    ci_joint_bounds_right: 0.72 

Current progress: 44 percent done.
ZBTB40
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.167093e-02	ci left: 5.953393e-01	ci right 6.145996e-01	k: 6050	n:10000
KS ci ratio: 2.110358e-02	ci left: 7.669899e-01	ci right 7.834495e-01	k: 7753	n:10000
ZBTB40   10000 perm   2 sec   (5706 perm/sec)   p_kst 7.753000e-01   p_cons 6.050000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZBTB40.4_3788_10000_0.7753_0.605_1.png
                gene_name: ZBTB40
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 46 percent done.
ZBTB44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.665324e-02	ci left: 1.992924e-01	ci right 2.152785e-01	k: 2072	n:10000
Cons ci ratio: 1.524659e-01	ci left: 5.725512e-02	ci right 6.680198e-02	k: 619	n:10000
KS ci ratio: 3.490513e-02	ci left: 5.479000e-01	ci right 5.674664e-01	k: 5577	n:10000
ZBTB44   10000 perm   2 sec   (6657 perm/sec)   p_kst 5.577000e-01   p_cons 6.190000e-02   p_joint 2.072000e-01

Joint ci ratio: 4.372646e-02	ci left: 2.803397e-01	ci right 2.929224e-01	k: 5732	n:20000
Cons ci ratio: 1.051694e-01	ci left: 6.152427e-02	ci right 6.840287e-02	k: 1298	n:20000
KS ci ratio: 2.524853e-02	ci left: 5.395692e-01	ci right 5.534173e-01	k: 10930	n:20000
ZBTB44   20000 perm   3 sec   (6003 perm/sec)   p_kst 5.465000e-01   p_cons 6.490000e-02   p_joint 2.866000e-01

Joint ci ratio: 3.760789e-02	ci left: 2.608405e-01	ci right 2.708716e-01	k: 7975	n:30000
Cons ci ratio: 8.511445e-02	ci left: 6.321594e-02	ci right 6.886846e-02	k: 1980	n:30000
KS ci ratio: 2.072276e-02	ci left: 5.382766e-01	ci right 5.495816e-01	k: 16318	n:30000
ZBTB44   30000 perm   5 sec   (5725 perm/sec)   p_kst 5.439333e-01   p_cons 6.600000e-02   p_joint 2.658333e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB44.4_1382_30000_0.54393_0.066_0.26583.png
                gene_name: ZBTB44
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.066 
      ci_cons_bounds_left: 0.063 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 48 percent done.
ZBTB7A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.460899e-02	ci left: 5.521087e-01	ci right 5.716552e-01	k: 5619	n:10000
Cons ci ratio: 4.882037e-02	ci left: 3.823146e-01	ci right 4.015484e-01	k: 3919	n:10000
KS ci ratio: 4.121321e-02	ci left: 4.650710e-01	ci right 4.847436e-01	k: 4749	n:10000
ZBTB7A   10000 perm   2 sec   (5860 perm/sec)   p_kst 4.749000e-01   p_cons 3.919000e-01   p_joint 5.619000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB7A.4_1763_10000_0.4749_0.3919_0.5619.png
                gene_name: ZBTB7A
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 49 percent done.
ZC3H11A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.908765e-02	ci left: 1.549259e-01	ci right 1.694715e-01	k: 1621	n:10000
Cons ci ratio: 1.179891e-01	ci left: 9.350575e-02	ci right 1.053288e-01	k: 993	n:10000
KS ci ratio: 4.617064e-02	ci left: 4.091051e-01	ci right 4.285422e-01	k: 4188	n:10000
ZC3H11A   10000 perm   2 sec   (5850 perm/sec)   p_kst 4.188000e-01   p_cons 9.930000e-02   p_joint 1.621000e-01

Joint ci ratio: 5.276098e-02	ci left: 2.105610e-01	ci right 2.220216e-01	k: 4325	n:20000
Cons ci ratio: 8.411543e-02	ci left: 9.381504e-02	ci right 1.021023e-01	k: 1958	n:20000
KS ci ratio: 3.258359e-02	ci left: 4.129473e-01	ci right 4.266760e-01	k: 8396	n:20000
ZC3H11A   20000 perm   4 sec   (5383 perm/sec)   p_kst 4.198000e-01   p_cons 9.790000e-02   p_joint 2.162500e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H11A.4_2497_20000_0.4198_0.0979_0.21625.png
                gene_name: ZC3H11A
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.098 
      ci_cons_bounds_left: 0.094 
     ci_cons_bounds_right: 0.10 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 51 percent done.
ZC3H12B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.347034e-02	ci left: 5.685494e-01	ci right 5.880049e-01	k: 5783	n:10000
Cons ci ratio: 1.788029e-02	ci left: 8.202549e-01	ci right 8.351537e-01	k: 8278	n:10000
KS ci ratio: 8.624746e-02	ci left: 1.637654e-01	ci right 1.786266e-01	k: 1711	n:10000
ZC3H12B   10000 perm   2 sec   (5840 perm/sec)   p_kst 1.711000e-01   p_cons 8.278000e-01   p_joint 5.783000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H12B.4_2531_10000_0.1711_0.8278_0.5783.png
                gene_name: ZC3H12B
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 52 percent done.
ZC3H14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.247489e-02	ci left: 7.440199e-01	ci right 7.610327e-01	k: 7526	n:10000
Cons ci ratio: 6.493302e-02	ci left: 2.583481e-01	ci right 2.757878e-01	k: 2670	n:10000
KS ci ratio: 2.142425e-02	ci left: 7.616239e-01	ci right 7.782186e-01	k: 7700	n:10000
ZC3H14   10000 perm   2 sec   (5549 perm/sec)   p_kst 7.700000e-01   p_cons 2.670000e-01   p_joint 7.526000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H14.4_2668_10000_0.77_0.267_0.7526.png
                gene_name: ZC3H14
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 54 percent done.
ZC3H15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.477642e-02	ci left: 4.240569e-01	ci right 4.435817e-01	k: 4338	n:10000
KS ci ratio: 1.006689e-02	ci left: 9.333016e-01	ci right 9.428413e-01	k: 9382	n:10000
ZC3H15   10000 perm   2 sec   (6303 perm/sec)   p_kst 9.382000e-01   p_cons 4.338000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZC3H15.4_1321_10000_0.9382_0.4338_1.png
                gene_name: ZC3H15
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 56 percent done.
ZC3H4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.030657e-02	ci left: 3.681846e-01	ci right 3.872867e-01	k: 3777	n:10000
Cons ci ratio: 5.822401e-02	ci left: 3.027268e-01	ci right 3.209830e-01	k: 3118	n:10000
KS ci ratio: 6.504931e-02	ci left: 2.576556e-01	ci right 2.750807e-01	k: 2663	n:10000
ZC3H4   10000 perm   2 sec   (5436 perm/sec)   p_kst 2.663000e-01   p_cons 3.118000e-01   p_joint 3.777000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3H4.4_3968_10000_0.2663_0.3118_0.3777.png
                gene_name: ZC3H4
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 57 percent done.
ZC3HAV1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.490424e-02	ci left: 4.226610e-01	ci right 4.421784e-01	k: 4324	n:10000
Cons ci ratio: 3.523883e-02	ci left: 5.431911e-01	ci right 5.627780e-01	k: 5530	n:10000
KS ci ratio: 6.608005e-02	ci left: 2.516216e-01	ci right 2.689183e-01	k: 2602	n:10000
ZC3HAV1   10000 perm   2 sec   (5705 perm/sec)   p_kst 2.602000e-01   p_cons 5.530000e-01   p_joint 4.324000e-01

Outputting figure to mutsig2_images.part000000000193/ZC3HAV1.4_2765_10000_0.2602_0.553_0.4324.png
                gene_name: ZC3HAV1
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 59 percent done.
ZBED2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.205714e-02	ci left: 4.549859e-01	ci right 4.746346e-01	k: 4648	n:10000
Cons ci ratio: 9.859073e-02	ci left: 1.297297e-01	ci right 1.432828e-01	k: 1364	n:10000
KS ci ratio: 1.111895e-02	ci left: 9.202817e-01	ci right 9.306688e-01	k: 9256	n:10000
ZBED2   10000 perm   1 sec   (7166 perm/sec)   p_kst 9.256000e-01   p_cons 1.364000e-01   p_joint 4.648000e-01

Outputting figure to mutsig2_images.part000000000193/ZBED2.3_661_10000_0.9256_0.1364_0.4648.png
                gene_name: ZBED2
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 61 percent done.
ZBTB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.629906e-02	ci left: 5.284690e-01	ci right 5.481087e-01	k: 5383	n:10000
Cons ci ratio: 9.356863e-02	ci left: 1.422698e-01	ci right 1.563351e-01	k: 1492	n:10000
KS ci ratio: 4.391342e-03	ci left: 9.853418e-01	ci right 9.897674e-01	k: 9877	n:10000
ZBTB1   10000 perm   2 sec   (6177 perm/sec)   p_kst 9.877000e-01   p_cons 1.492000e-01   p_joint 5.383000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB1.3_2187_10000_0.9877_0.1492_0.5383.png
                gene_name: ZBTB1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 62 percent done.
ZBTB26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.904794e-02	ci left: 2.967772e-01	ci right 3.149361e-01	k: 3058	n:10000
Cons ci ratio: 2.246886e-02	ci left: 7.441210e-01	ci right 7.611316e-01	k: 7527	n:10000
KS ci ratio: 8.639973e-02	ci left: 1.632741e-01	ci right 1.781182e-01	k: 1706	n:10000
ZBTB26   10000 perm   2 sec   (6464 perm/sec)   p_kst 1.706000e-01   p_cons 7.527000e-01   p_joint 3.058000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB26.3_1330_10000_0.1706_0.7527_0.3058.png
                gene_name: ZBTB26
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.76 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 64 percent done.
ZBTB39
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.836432e-02	ci left: 5.008505e-01	ci right 5.205433e-01	k: 5107	n:10000
Cons ci ratio: 6.155970e-02	ci left: 2.795337e-01	ci right 2.973897e-01	k: 2884	n:10000
KS ci ratio: 3.823406e-02	ci left: 5.025508e-01	ci right 5.222420e-01	k: 5124	n:10000
ZBTB39   10000 perm   2 sec   (5930 perm/sec)   p_kst 5.124000e-01   p_cons 2.884000e-01   p_joint 5.107000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB39.3_2143_10000_0.5124_0.2884_0.5107.png
                gene_name: ZBTB39
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 66 percent done.
ZC3H12A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.776711e-02	ci left: 1.589518e-01	ci right 1.736431e-01	k: 1662	n:10000
Cons ci ratio: 1.494067e-02	ci left: 8.665194e-01	ci right 8.796624e-01	k: 8732	n:10000
KS ci ratio: 2.221280e-01	ci left: 2.683859e-02	ci right 3.363872e-02	k: 301	n:10000
ZC3H12A   10000 perm   2 sec   (6173 perm/sec)   p_kst 3.010000e-02   p_cons 8.732000e-01   p_joint 1.662000e-01

Joint ci ratio: 1.108955e-01	ci left: 5.553029e-02	ci right 6.209871e-02	k: 1175	n:20000
Cons ci ratio: 1.040571e-02	ci left: 8.718604e-01	ci right 8.810298e-01	k: 17530	n:20000
KS ci ratio: 1.584294e-01	ci left: 2.734281e-02	ci right 3.209522e-02	k: 593	n:20000
ZC3H12A   20000 perm   4 sec   (5713 perm/sec)   p_kst 2.965000e-02   p_cons 8.765000e-01   p_joint 5.875000e-02

Joint ci ratio: 9.079278e-02	ci left: 5.583789e-02	ci right 6.118135e-02	k: 1754	n:30000
Cons ci ratio: 8.440925e-03	ci left: 8.741419e-01	ci right 8.815848e-01	k: 26337	n:30000
KS ci ratio: 1.277417e-01	ci left: 2.848615e-02	ci right 3.240548e-02	k: 912	n:30000
ZC3H12A   30000 perm   5 sec   (5479 perm/sec)   p_kst 3.040000e-02   p_cons 8.779000e-01   p_joint 5.846667e-02

Joint ci ratio: 8.514258e-02	ci left: 4.817833e-02	ci right 5.248725e-02	k: 2012	n:40000
Cons ci ratio: 7.266400e-03	ci left: 8.759410e-01	ci right 8.823539e-01	k: 35167	n:40000
KS ci ratio: 1.100389e-01	ci left: 2.905546e-02	ci right 3.246311e-02	k: 1229	n:40000
ZC3H12A   40000 perm   8 sec   (5295 perm/sec)   p_kst 3.072500e-02   p_cons 8.791750e-01   p_joint 5.030000e-02

Joint ci ratio: 6.916771e-02	ci left: 5.826843e-02	ci right 6.246279e-02	k: 3017	n:50000
Cons ci ratio: 6.519827e-03	ci left: 8.756043e-01	ci right 8.813516e-01	k: 43925	n:50000
KS ci ratio: 9.778409e-02	ci left: 2.961526e-02	ci right 3.267949e-02	k: 1556	n:50000
ZC3H12A   50000 perm   10 sec   (5174 perm/sec)   p_kst 3.112000e-02   p_cons 8.785000e-01   p_joint 6.034000e-02

Outputting figure to mutsig2_images.part000000000193/ZC3H12A.3_1820_50000_0.03112_0.8785_0.06034.png
                gene_name: ZC3H12A
               theta_stop: 0.098 
                    nperm: 50000 
                     p_ks: 0.031 
        ci_ks_bounds_left: 0.030 
       ci_ks_bounds_right: 0.033 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 67 percent done.
ZC4H2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.021345e-02	ci left: 9.315420e-01	ci right 9.412019e-01	k: 9365	n:10000
Cons ci ratio: 7.800821e-02	ci left: 1.936760e-01	ci right 2.094982e-01	k: 2015	n:10000
KS ci ratio: 3.987402e-02	ci left: 4.815553e-01	ci right 5.012497e-01	k: 4914	n:10000
ZC4H2   10000 perm   1 sec   (6709 perm/sec)   p_kst 4.914000e-01   p_cons 2.015000e-01   p_joint 9.365000e-01

Outputting figure to mutsig2_images.part000000000193/ZC4H2.3_714_10000_0.4914_0.2015_0.9365.png
                gene_name: ZC4H2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.93 
    ci_joint_bounds_right: 0.94 

Current progress: 69 percent done.
ZCCHC16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.122343e-02	ci left: 9.189410e-01	ci right 9.294103e-01	k: 9243	n:10000
Cons ci ratio: 2.221543e-02	ci left: 7.483685e-01	ci right 7.652816e-01	k: 7569	n:10000
KS ci ratio: 2.760851e-02	ci left: 6.590747e-01	ci right 6.776271e-01	k: 6684	n:10000
ZCCHC16   10000 perm   1 sec   (6718 perm/sec)   p_kst 6.684000e-01   p_cons 7.569000e-01   p_joint 9.243000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC16.3_937_10000_0.6684_0.7569_0.9243.png
                gene_name: ZCCHC16
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 70 percent done.
ZCCHC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.509683e-02	ci left: 4.205673e-01	ci right 4.400733e-01	k: 4303	n:10000
Cons ci ratio: 8.603533e-02	ci left: 1.644533e-01	ci right 1.793384e-01	k: 1718	n:10000
KS ci ratio: 3.329911e-02	ci left: 5.710566e-01	ci right 5.904963e-01	k: 5808	n:10000
ZCCHC2   10000 perm   2 sec   (5818 perm/sec)   p_kst 5.808000e-01   p_cons 1.718000e-01   p_joint 4.303000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC2.3_3593_10000_0.5808_0.1718_0.4303.png
                gene_name: ZCCHC2
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 72 percent done.
ZCCHC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.644232e-02	ci left: 2.495448e-01	ci right 2.667963e-01	k: 2581	n:10000
Cons ci ratio: 1.137175e-01	ci left: 1.001293e-01	ci right 1.123011e-01	k: 1061	n:10000
KS ci ratio: 4.091696e-02	ci left: 4.686667e-01	ci right 4.883458e-01	k: 4785	n:10000
ZCCHC4   10000 perm   2 sec   (6371 perm/sec)   p_kst 4.785000e-01   p_cons 1.061000e-01   p_joint 2.581000e-01

Joint ci ratio: 4.650258e-02	ci left: 2.560150e-01	ci right 2.682542e-01	k: 5242	n:20000
Cons ci ratio: 7.681736e-02	ci left: 1.107573e-01	ci right 1.196549e-01	k: 2303	n:20000
KS ci ratio: 2.775256e-02	ci left: 4.923960e-01	ci right 5.063042e-01	k: 9987	n:20000
ZCCHC4   20000 perm   3 sec   (5732 perm/sec)   p_kst 4.993500e-01   p_cons 1.151500e-01   p_joint 2.621000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC4.3_1594_20000_0.49935_0.11515_0.2621.png
                gene_name: ZCCHC4
               theta_stop: 0.077 
                    nperm: 20000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 74 percent done.
ZCCHC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.703470e-02	ci left: 4.001384e-01	ci right 4.195142e-01	k: 4098	n:10000
Cons ci ratio: 4.166204e-02	ci left: 4.596785e-01	ci right 4.793393e-01	k: 4695	n:10000
KS ci ratio: 7.293884e-02	ci left: 2.158598e-01	ci right 2.323013e-01	k: 2240	n:10000
ZCCHC9   10000 perm   1 sec   (6905 perm/sec)   p_kst 2.240000e-01   p_cons 4.695000e-01   p_joint 4.098000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC9.3_836_10000_0.224_0.4695_0.4098.png
                gene_name: ZCCHC9
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 75 percent done.
ZCWPW1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.060037e-02	ci left: 7.753971e-01	ci right 7.916375e-01	k: 7836	n:10000
KS ci ratio: 2.051534e-02	ci left: 7.768156e-01	ci right 7.930181e-01	k: 7850	n:10000
ZCWPW1   10000 perm   1 sec   (6786 perm/sec)   p_kst 7.850000e-01   p_cons 7.836000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZCWPW1.3_2011_10000_0.785_0.7836_1.png
                gene_name: ZCWPW1
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
ZDHHC14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.157234e-02	ci left: 1.798919e-01	ci right 1.952906e-01	k: 1875	n:10000
Cons ci ratio: 1.087943e-01	ci left: 1.086148e-01	ci right 1.212105e-01	k: 1148	n:10000
KS ci ratio: 8.805305e-02	ci left: 1.580679e-01	ci right 1.727275e-01	k: 1653	n:10000
ZDHHC14   10000 perm   2 sec   (6577 perm/sec)   p_kst 1.653000e-01   p_cons 1.148000e-01   p_joint 1.875000e-01

Joint ci ratio: 6.070916e-02	ci left: 1.672373e-01	ci right 1.777580e-01	k: 3449	n:20000
Cons ci ratio: 7.625736e-02	ci left: 1.122322e-01	ci right 1.211796e-01	k: 2333	n:20000
KS ci ratio: 6.260429e-02	ci left: 1.587444e-01	ci right 1.690536e-01	k: 3277	n:20000
ZDHHC14   20000 perm   3 sec   (5925 perm/sec)   p_kst 1.638500e-01   p_cons 1.166500e-01   p_joint 1.724500e-01

Outputting figure to mutsig2_images.part000000000193/ZDHHC14.3_1503_20000_0.16385_0.11665_0.17245.png
                gene_name: ZDHHC14
               theta_stop: 0.076 
                    nperm: 20000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 79 percent done.
ZBTB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.208946e-02	ci left: 2.199059e-01	ci right 2.364527e-01	k: 2281	n:10000
Cons ci ratio: 1.369703e-01	ci left: 7.049285e-02	ci right 8.095591e-02	k: 756	n:10000
KS ci ratio: 1.266772e-02	ci left: 8.995979e-01	ci right 9.111647e-01	k: 9055	n:10000
ZBTB3   10000 perm   2 sec   (6596 perm/sec)   p_kst 9.055000e-01   p_cons 7.560000e-02   p_joint 2.281000e-01

Joint ci ratio: 3.794912e-02	ci left: 3.412466e-01	ci right 3.544976e-01	k: 6957	n:20000
Cons ci ratio: 9.219200e-02	ci left: 7.906552e-02	ci right 8.675625e-02	k: 1657	n:20000
KS ci ratio: 8.872043e-03	ci left: 9.029924e-01	ci right 9.110888e-01	k: 18142	n:20000
ZBTB3   20000 perm   3 sec   (6079 perm/sec)   p_kst 9.071000e-01   p_cons 8.285000e-02   p_joint 3.478500e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB3.2_1733_20000_0.9071_0.08285_0.34785.png
                gene_name: ZBTB3
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.083 
      ci_cons_bounds_left: 0.079 
     ci_cons_bounds_right: 0.087 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.35 

Current progress: 80 percent done.
ZBTB34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.040908e-01	ci left: 1.176982e-01	ci right 1.307216e-01	k: 1241	n:10000
KS ci ratio: 3.973073e-02	ci left: 4.833543e-01	ci right 5.030497e-01	k: 4932	n:10000
ZBTB34   10000 perm   2 sec   (6485 perm/sec)   p_kst 4.932000e-01   p_cons 1.241000e-01   p_joint 1

Joint ci ratio: 1.216992e-02	ci left: 8.332246e-01	ci right 8.434768e-01	k: 16768	n:20000
Cons ci ratio: 7.285306e-02	ci left: 1.218242e-01	ci right 1.310847e-01	k: 2528	n:20000
KS ci ratio: 2.836994e-02	ci left: 4.813995e-01	ci right 4.953039e-01	k: 9767	n:20000
ZBTB34   20000 perm   3 sec   (5985 perm/sec)   p_kst 4.883500e-01   p_cons 1.264000e-01   p_joint 8.384000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB34.2_1507_20000_0.48835_0.1264_0.8384.png
                gene_name: ZBTB34
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 82 percent done.
ZBTB38
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.160471e-02	ci left: 2.792365e-01	ci right 2.970871e-01	k: 2881	n:10000
Cons ci ratio: 9.316556e-02	ci left: 1.433484e-01	ci right 1.574560e-01	k: 1503	n:10000
KS ci ratio: 6.642498e-02	ci left: 2.496437e-01	ci right 2.668973e-01	k: 2582	n:10000
ZBTB38   10000 perm   2 sec   (5931 perm/sec)   p_kst 2.582000e-01   p_cons 1.503000e-01   p_joint 2.881000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB38.2_3592_10000_0.2582_0.1503_0.2881.png
                gene_name: ZBTB38
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.14 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 84 percent done.
ZBTB43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.079305e-02	ci left: 9.244098e-01	ci right 9.345383e-01	k: 9296	n:10000
KS ci ratio: 6.230261e-02	ci left: 2.746806e-01	ci right 2.924457e-01	k: 2835	n:10000
ZBTB43   10000 perm   1 sec   (7126 perm/sec)   p_kst 2.835000e-01   p_cons 9.296000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZBTB43.2_1408_10000_0.2835_0.9296_1.png
                gene_name: ZBTB43
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
ZBTB6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.986261e-03	ci left: 9.657293e-01	ci right 9.725938e-01	k: 9693	n:10000
Cons ci ratio: 3.672464e-02	ci left: 5.226626e-01	ci right 5.423184e-01	k: 5325	n:10000
KS ci ratio: 3.487684e-02	ci left: 5.483008e-01	ci right 5.678653e-01	k: 5581	n:10000
ZBTB6   10000 perm   1 sec   (7111 perm/sec)   p_kst 5.581000e-01   p_cons 5.325000e-01   p_joint 9.693000e-01

Outputting figure to mutsig2_images.part000000000193/ZBTB6.2_1279_10000_0.5581_0.5325_0.9693.png
                gene_name: ZBTB6
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 87 percent done.
ZC3H12D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 5.546629e-02	ci left: 3.237627e-01	ci right 3.423347e-01	k: 3330	n:10000
KS ci ratio: 3.919412e-02	ci left: 4.901514e-01	ci right 5.098486e-01	k: 5000	n:10000
ZC3H12D   10000 perm   2 sec   (6663 perm/sec)   p_kst 5.000000e-01   p_cons 3.330000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZC3H12D.2_1604_10000_0.5_0.333_1.png
                gene_name: ZC3H12D
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 89 percent done.
ZCCHC12
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.263356e-02	ci left: 5.808872e-01	ci right 6.002600e-01	k: 5906	n:10000
KS ci ratio: 1.180587e-02	ci left: 9.113176e-01	ci right 9.222382e-01	k: 9169	n:10000
ZCCHC12   10000 perm   1 sec   (7215 perm/sec)   p_kst 9.169000e-01   p_cons 5.906000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000193/ZCCHC12.2_1213_10000_0.9169_0.5906_1.png
                gene_name: ZCCHC12
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
ZCCHC17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.113958e-03	ci left: 9.645717e-01	ci right 9.715522e-01	k: 9682	n:10000
Cons ci ratio: 8.971858e-03	ci left: 9.458575e-01	ci right 9.544778e-01	k: 9503	n:10000
KS ci ratio: 4.422483e-02	ci left: 4.301399e-01	ci right 4.496951e-01	k: 4399	n:10000
ZCCHC17   10000 perm   1 sec   (7063 perm/sec)   p_kst 4.399000e-01   p_cons 9.503000e-01   p_joint 9.682000e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC17.2_754_10000_0.4399_0.9503_0.9682.png
                gene_name: ZCCHC17
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 92 percent done.
ZCCHC24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.864716e-02	ci left: 2.996526e-01	ci right 3.178589e-01	k: 3087	n:10000
Cons ci ratio: 2.391782e-02	ci left: 7.198696e-01	ci right 7.373970e-01	k: 7287	n:10000
KS ci ratio: 1.083685e-01	ci left: 1.093957e-01	ci right 1.220291e-01	k: 1156	n:10000
ZCCHC24   10000 perm   2 sec   (6431 perm/sec)   p_kst 1.156000e-01   p_cons 7.287000e-01   p_joint 3.087000e-01

Joint ci ratio: 4.178284e-02	ci left: 2.991696e-01	ci right 3.119870e-01	k: 6111	n:20000
Cons ci ratio: 1.676311e-02	ci left: 7.260046e-01	ci right 7.383279e-01	k: 14644	n:20000
KS ci ratio: 7.802814e-02	ci left: 1.076609e-01	ci right 1.164522e-01	k: 2240	n:20000
ZCCHC24   20000 perm   3 sec   (6124 perm/sec)   p_kst 1.120000e-01   p_cons 7.322000e-01   p_joint 3.055500e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC24.2_742_20000_0.112_0.7322_0.30555.png
                gene_name: ZCCHC24
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 93 percent done.
ZCCHC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.073740e-01	ci left: 1.112507e-01	ci right 1.239730e-01	k: 1175	n:10000
Cons ci ratio: 1.055019e-01	ci left: 1.148645e-01	ci right 1.277571e-01	k: 1212	n:10000
KS ci ratio: 1.021741e-01	ci left: 1.217066e-01	ci right 1.349108e-01	k: 1282	n:10000
ZCCHC7   10000 perm   1 sec   (6934 perm/sec)   p_kst 1.282000e-01   p_cons 1.212000e-01   p_joint 1.175000e-01

Joint ci ratio: 4.344482e-02	ci left: 2.829721e-01	ci right 2.955892e-01	k: 5785	n:20000
Cons ci ratio: 7.474277e-02	ci left: 1.163630e-01	ci right 1.254476e-01	k: 2417	n:20000
KS ci ratio: 7.184833e-02	ci left: 1.248759e-01	ci right 1.342321e-01	k: 2590	n:20000
ZCCHC7   20000 perm   3 sec   (6243 perm/sec)   p_kst 1.295000e-01   p_cons 1.208500e-01   p_joint 2.892500e-01

Outputting figure to mutsig2_images.part000000000193/ZCCHC7.2_1664_20000_0.1295_0.12085_0.28925.png
                gene_name: ZCCHC7
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 95 percent done.
ZDHHC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.744565e-02	ci left: 2.439092e-01	ci right 2.610352e-01	k: 2524	n:10000
Cons ci ratio: 6.541742e-02	ci left: 2.554791e-01	ci right 2.728584e-01	k: 2641	n:10000
KS ci ratio: 4.762296e-02	ci left: 3.941625e-01	ci right 4.134936e-01	k: 4038	n:10000
ZDHHC1   10000 perm   1 sec   (6856 perm/sec)   p_kst 4.038000e-01   p_cons 2.641000e-01   p_joint 2.524000e-01

Outputting figure to mutsig2_images.part000000000193/ZDHHC1.2_1498_10000_0.4038_0.2641_0.2524.png
                gene_name: ZDHHC1
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.26 

Current progress: 97 percent done.
ZDHHC16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.340175e-02	ci left: 8.892362e-01	ci right 9.013324e-01	k: 8954	n:10000
Cons ci ratio: 3.427985e-02	ci left: 5.568193e-01	ci right 5.763419e-01	k: 5666	n:10000
KS ci ratio: 1.130045e-01	ci left: 1.012990e-01	ci right 1.135307e-01	k: 1073	n:10000
ZDHHC16   10000 perm   2 sec   (6563 perm/sec)   p_kst 1.073000e-01   p_cons 5.666000e-01   p_joint 8.954000e-01

Joint ci ratio: 4.080430e-02	ci left: 3.092606e-01	ci right 3.221930e-01	k: 6314	n:20000
Cons ci ratio: 2.427804e-02	ci left: 5.589467e-01	ci right 5.727342e-01	k: 11317	n:20000
KS ci ratio: 8.053930e-02	ci left: 1.016188e-01	ci right 1.101961e-01	k: 2117	n:20000
ZDHHC16   20000 perm   4 sec   (5153 perm/sec)   p_kst 1.058500e-01   p_cons 5.658500e-01   p_joint 3.157000e-01

Outputting figure to mutsig2_images.part000000000193/ZDHHC16.2_1174_20000_0.10585_0.56585_0.3157.png
                gene_name: ZDHHC16
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 98 percent done.
ZDHHC17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.269727e-02	ci left: 8.991872e-01	ci right 9.107756e-01	k: 9051	n:10000
Cons ci ratio: 4.384994e-02	ci left: 4.343291e-01	ci right 4.539035e-01	k: 4441	n:10000
KS ci ratio: 9.581213e-03	ci left: 9.390015e-01	ci right 9.481380e-01	k: 9437	n:10000
ZDHHC17   10000 perm   2 sec   (6542 perm/sec)   p_kst 9.437000e-01   p_cons 4.441000e-01   p_joint 9.051000e-01

Outputting figure to mutsig2_images.part000000000193/ZDHHC17.2_1967_10000_0.9437_0.4441_0.9051.png
                gene_name: ZDHHC17
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000193
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 193 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1708>
Subject: Job 9894210: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1708>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000194> was used as the working directory.
Started at Sat Oct  6 00:36:21 2012
Results reported at Sat Oct  6 02:44:07 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000194.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000194.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 194  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000194.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   7753.39 sec.
    Max Memory :      3564 MB
    Max Swap   :      5929 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
194
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 194
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 194: processing genes 17400 - 17489
Calculating significance of each gene.
Using projection method.
17400	ZDHHC19	4.913158e-01
17401	ZDHHC2	4.337256e-01
17402	ZDHHC20	4.835170e-01
17403	ZDHHC21	5.324184e-02
17404	ZDHHC22	1
17405	ZDHHC23	3.761981e-01
17406	ZDHHC24	2.374297e-01
17407	ZDHHC3	6.612500e-01
17408	ZDHHC4	6.881212e-01
17409	ZDHHC5	7.904631e-01
17410	ZDHHC6	4.495975e-01
17411	ZDHHC7	1.624550e-01
17412	ZDHHC8	9.427704e-01
17413	ZDHHC9	6.120538e-01
17414	ZEB1	1.249384e-03
17415	ZEB2	5.031438e-04
17416	ZER1	5.881535e-01
17417	ZFAND1	1
17418	ZFAND2A	1
17419	ZFAND2B	1
17420	ZFAND3	1.615895e-01
17421	ZFAND5	1
17422	ZFAND6	1
17423	ZFAT	6.316653e-01
17424	ZFC3H1	6.812631e-01
17425	ZFHX3	8.228894e-01
17426	ZFHX4	8.247582e-04
17427	ZFP1	6.359910e-01
17428	ZFP106	8.296543e-02
17429	ZFP112	1.375060e-02
17430	ZFP14	1.394513e-01
17431	ZFP161	1.507626e-01
17432	ZFP2	4.103401e-02
17433	ZFP28	2.206735e-02
17434	ZFP3	6.037166e-03
17435	ZFP30	4.768997e-01
17436	ZFP36	9.219674e-01
17437	ZFP36L1	6.891394e-01
17438	ZFP36L2	7.137887e-01
17439	ZFP37	9.505919e-01
17440	ZFP41	1
17441	ZFP42	2.850470e-01
17442	ZFP57	1.069086e-01
17443	ZFP64	6.654256e-01
17444	ZFP82	2.512817e-01
17445	ZFP90	6.537832e-01
17446	ZFP91	1.617591e-01
17447	ZFPL1	4.352574e-01
17448	ZFPM1	1
17449	ZFPM2	3.056146e-01
17450	ZFR	7.178868e-01
17451	ZFR2	1
17452	ZFX	3.452371e-01
17453	ZFY	8.866618e-01
17454	ZFYVE1	4.094438e-01
17455	ZFYVE16	2.618914e-01
17456	ZFYVE19	1
17457	ZFYVE20	9.919295e-01
17458	ZFYVE21	7.077519e-01
17459	ZFYVE26	9.829293e-01
17460	ZFYVE27	9.033852e-01
17461	ZFYVE28	9.703105e-01
17462	ZFYVE9	1.825972e-01
17463	ZG16B	1
17464	ZGLP1	1
17465	ZGPAT	1
17466	ZHX1	9.200389e-01
17467	ZHX2	8.229774e-03
17468	ZHX3	1.112301e-01
17469	ZIC1	8.797739e-01
17470	ZIC2	8.542891e-01
17471	ZIC3	2.952323e-01
17472	ZIC4	8.248982e-02
17473	ZIC5	1
17474	ZIK1	6.504658e-03
17475	ZIM2	2.551393e-01
17476	ZIM3	6.939436e-04
17477	ZKSCAN1	1.034017e-01
17478	ZKSCAN2	3.069149e-01
17479	ZKSCAN3	5.617687e-01
17480	ZKSCAN4	7.347920e-01
17481	ZKSCAN5	2.249422e-01
17482	ZMAT1	3.249818e-02
17483	ZMAT2	5.721629e-01
17484	ZMAT3	1.586144e-02
17485	ZMAT4	3.601707e-02
17486	ZMAT5	2.817123e-01
17487	ZMIZ1	9.704424e-01
17488	ZMIZ2	9.891331e-01
17489	ZMPSTE24	1.626388e-01
Done

Running MutSig 2:
Scatter job 194: processing genes 17400 - 17489
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZFHX4
Processing conservation and coverage...
91% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.026603e-02	ci left: 7.809707e-01	ci right 7.970605e-01	k: 7891	n:10000
Cons ci ratio: 2.956981e-02	ci left: 6.277880e-01	ci right 6.467320e-01	k: 6373	n:10000
KS ci ratio: 2.818337e-02	ci left: 6.498149e-01	ci right 6.684923e-01	k: 6592	n:10000
ZFHX4   10000 perm   4 sec   (2566 perm/sec)   p_kst 6.592000e-01   p_cons 6.373000e-01   p_joint 7.891000e-01

Outputting figure to mutsig2_images.part000000000194/ZFHX4.43_10891_10000_0.6592_0.6373_0.7891.png
                gene_name: ZFHX4
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 2 percent done.
ZEB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.527287e-01	ci left: 5.706232e-02	ci right 6.659491e-02	k: 617	n:10000
Cons ci ratio: 1.184452e-02	ci left: 9.108030e-01	ci right 9.217531e-01	k: 9164	n:10000
KS ci ratio: 1.935483e-01	ci left: 3.557635e-02	ci right 4.329490e-02	k: 393	n:10000
ZEB2   10000 perm   2 sec   (4728 perm/sec)   p_kst 3.930000e-02   p_cons 9.164000e-01   p_joint 6.170000e-02

Joint ci ratio: 1.133746e-01	ci left: 5.319383e-02	ci right 5.963589e-02	k: 1127	n:20000
Cons ci ratio: 8.509517e-03	ci left: 9.099269e-01	ci right 9.177523e-01	k: 18278	n:20000
KS ci ratio: 1.388934e-01	ci left: 3.563416e-02	ci right 4.100114e-02	k: 765	n:20000
ZEB2   20000 perm   5 sec   (4254 perm/sec)   p_kst 3.825000e-02   p_cons 9.139000e-01   p_joint 5.635000e-02

Joint ci ratio: 9.065570e-02	ci left: 5.600099e-02	ci right 6.135154e-02	k: 1759	n:30000
Cons ci ratio: 6.972535e-03	ci left: 9.100928e-01	ci right 9.164935e-01	k: 27400	n:30000
KS ci ratio: 1.107765e-01	ci left: 3.784298e-02	ci right 4.231332e-02	k: 1201	n:30000
ZEB2   30000 perm   7 sec   (4130 perm/sec)   p_kst 4.003333e-02   p_cons 9.133333e-01   p_joint 5.863333e-02

Joint ci ratio: 7.520618e-02	ci left: 6.120314e-02	ci right 6.601045e-02	k: 2543	n:40000
Cons ci ratio: 6.041382e-03	ci left: 9.104491e-01	ci right 9.159908e-01	k: 36530	n:40000
KS ci ratio: 9.580081e-02	ci left: 3.824713e-02	ci right 4.211998e-02	k: 1606	n:40000
ZEB2   40000 perm   10 sec   (4056 perm/sec)   p_kst 4.015000e-02   p_cons 9.132500e-01   p_joint 6.357500e-02

Outputting figure to mutsig2_images.part000000000194/ZEB2.20_3681_40000_0.04015_0.91325_0.063575.png
                gene_name: ZEB2
               theta_stop: 0.096 
                    nperm: 40000 
                     p_ks: 0.040 
        ci_ks_bounds_left: 0.038 
       ci_ks_bounds_right: 0.042 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.066 

Current progress: 3 percent done.
ZFHX3
Processing conservation and coverage...
89% 
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.728889e-02	ci left: 5.150563e-01	ci right 5.347292e-01	k: 5249	n:10000
Cons ci ratio: 2.086731e-02	ci left: 7.709396e-01	ci right 7.872974e-01	k: 7792	n:10000
KS ci ratio: 4.760319e-02	ci left: 3.943616e-01	ci right 4.136943e-01	k: 4040	n:10000
ZFHX3   10000 perm   3 sec   (3410 perm/sec)   p_kst 4.040000e-01   p_cons 7.792000e-01   p_joint 5.249000e-01

Outputting figure to mutsig2_images.part000000000194/ZFHX3.14_11148_10000_0.404_0.7792_0.5249.png
                gene_name: ZFHX3
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.53 

Current progress: 5 percent done.
ZFP106
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.452535e-02	ci left: 1.694660e-01	ci right 1.845227e-01	k: 1769	n:10000
Cons ci ratio: 1.027259e-01	ci left: 1.205332e-01	ci right 1.336849e-01	k: 1270	n:10000
KS ci ratio: 5.536657e-02	ci left: 3.245569e-01	ci right 3.431400e-01	k: 3338	n:10000
ZFP106   10000 perm   3 sec   (3837 perm/sec)   p_kst 3.338000e-01   p_cons 1.270000e-01   p_joint 1.769000e-01

Joint ci ratio: 5.817791e-02	ci left: 1.795902e-01	ci right 1.904015e-01	k: 3699	n:20000
Cons ci ratio: 7.247628e-02	ci left: 1.229562e-01	ci right 1.322524e-01	k: 2551	n:20000
KS ci ratio: 3.916328e-02	ci left: 3.271646e-01	ci right 3.402838e-01	k: 6674	n:20000
ZFP106   20000 perm   6 sec   (3528 perm/sec)   p_kst 3.337000e-01   p_cons 1.275500e-01   p_joint 1.849500e-01

Outputting figure to mutsig2_images.part000000000194/ZFP106.14_5728_20000_0.3337_0.12755_0.18495.png
                gene_name: ZFP106
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 7 percent done.
ZEB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.668601e-02	ci left: 2.481605e-01	ci right 2.653814e-01	k: 2567	n:10000
Cons ci ratio: 2.807683e-02	ci left: 6.515256e-01	ci right 6.701806e-01	k: 6609	n:10000
KS ci ratio: 8.961576e-02	ci left: 1.533552e-01	ci right 1.678431e-01	k: 1605	n:10000
ZEB1   10000 perm   2 sec   (4480 perm/sec)   p_kst 1.605000e-01   p_cons 6.609000e-01   p_joint 2.567000e-01

Outputting figure to mutsig2_images.part000000000194/ZEB1.12_3425_10000_0.1605_0.6609_0.2567.png
                gene_name: ZEB1
               theta_stop: 0.090 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 8 percent done.
ZFYVE16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.570673e-02	ci left: 8.547786e-01	ci right 8.684100e-01	k: 8617	n:10000
Cons ci ratio: 3.460899e-02	ci left: 5.521087e-01	ci right 5.716552e-01	k: 5619	n:10000
KS ci ratio: 2.358540e-02	ci left: 7.254243e-01	ci right 7.428391e-01	k: 7342	n:10000
ZFYVE16   10000 perm   2 sec   (4356 perm/sec)   p_kst 7.342000e-01   p_cons 5.619000e-01   p_joint 8.617000e-01

Outputting figure to mutsig2_images.part000000000194/ZFYVE16.12_4688_10000_0.7342_0.5619_0.8617.png
                gene_name: ZFYVE16
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 10 percent done.
ZFC3H1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.575280e-02	ci left: 8.540644e-01	ci right 8.677246e-01	k: 8610	n:10000
Cons ci ratio: 9.927474e-03	ci left: 9.349586e-01	ci right 9.443833e-01	k: 9398	n:10000
KS ci ratio: 2.555722e-02	ci left: 6.926251e-01	ci right 7.106573e-01	k: 7017	n:10000
ZFC3H1   10000 perm   3 sec   (3938 perm/sec)   p_kst 7.017000e-01   p_cons 9.398000e-01   p_joint 8.610000e-01

Outputting figure to mutsig2_images.part000000000194/ZFC3H1.11_6110_10000_0.7017_0.9398_0.861.png
                gene_name: ZFC3H1
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.87 

Current progress: 11 percent done.
ZFP28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.285258e-01	ci left: 7.960546e-02	ci right 9.063764e-02	k: 850	n:10000
Cons ci ratio: 2.625735e-01	ci left: 1.893425e-02	ci right 2.474894e-02	k: 217	n:10000
KS ci ratio: 4.537380e-02	ci left: 4.175767e-01	ci right 4.370657e-01	k: 4273	n:10000
ZFP28   10000 perm   2 sec   (5241 perm/sec)   p_kst 4.273000e-01   p_cons 2.170000e-02   p_joint 8.500000e-02

Joint ci ratio: 1.007989e-01	ci left: 6.674574e-02	ci right 7.387980e-02	k: 1405	n:20000
Cons ci ratio: 1.937784e-01	ci left: 1.810475e-02	ci right 2.203652e-02	k: 400	n:20000
KS ci ratio: 3.107844e-02	ci left: 4.360994e-01	ci right 4.499172e-01	k: 8860	n:20000
ZFP28   20000 perm   4 sec   (4674 perm/sec)   p_kst 4.430000e-01   p_cons 2.000000e-02   p_joint 7.025000e-02

Joint ci ratio: 7.674823e-02	ci left: 7.692145e-02	ci right 8.309351e-02	k: 2399	n:30000
Cons ci ratio: 1.588280e-01	ci left: 1.831759e-02	ci right 2.150967e-02	k: 596	n:30000
KS ci ratio: 2.529748e-02	ci left: 4.388993e-01	ci right 4.501782e-01	k: 13336	n:30000
ZFP28   30000 perm   7 sec   (4306 perm/sec)   p_kst 4.445333e-01   p_cons 1.986667e-02   p_joint 7.996667e-02

Joint ci ratio: 6.789477e-02	ci left: 7.430729e-02	ci right 7.955433e-02	k: 3076	n:40000
Cons ci ratio: 1.398065e-01	ci left: 1.792597e-02	ci right 2.064446e-02	k: 770	n:40000
KS ci ratio: 2.180610e-02	ci left: 4.419694e-01	ci right 4.517384e-01	k: 17874	n:40000
ZFP28   40000 perm   9 sec   (4244 perm/sec)   p_kst 4.468500e-01   p_cons 1.925000e-02   p_joint 7.690000e-02

Joint ci ratio: 6.137113e-02	ci left: 7.312008e-02	ci right 7.776935e-02	k: 3771	n:50000
Cons ci ratio: 1.271308e-01	ci left: 1.747251e-02	ci right 1.986384e-02	k: 932	n:50000
KS ci ratio: 1.951242e-02	ci left: 4.422756e-01	ci right 4.510106e-01	k: 22332	n:50000
ZFP28   50000 perm   12 sec   (4044 perm/sec)   p_kst 4.466400e-01   p_cons 1.864000e-02   p_joint 7.542000e-02

Joint ci ratio: 6.573622e-02	ci left: 5.410782e-02	ci right 5.780195e-02	k: 3356	n:60000
Cons ci ratio: 1.171573e-01	ci left: 1.724254e-02	ci right 1.940441e-02	k: 1098	n:60000
KS ci ratio: 1.834413e-02	ci left: 4.281813e-01	ci right 4.361253e-01	k: 25929	n:60000
ZFP28   60000 perm   15 sec   (3994 perm/sec)   p_kst 4.321500e-01   p_cons 1.830000e-02   p_joint 5.593333e-02

Joint ci ratio: 5.913979e-02	ci left: 5.730792e-02	ci right 6.081445e-02	k: 4133	n:70000
Cons ci ratio: 1.080881e-01	ci left: 1.744509e-02	ci right 1.945225e-02	k: 1290	n:70000
KS ci ratio: 1.699357e-02	ci left: 4.281835e-01	ci right 4.355365e-01	k: 30230	n:70000
ZFP28   70000 perm   18 sec   (3950 perm/sec)   p_kst 4.318571e-01   p_cons 1.842857e-02   p_joint 5.904286e-02

Joint ci ratio: 5.637118e-02	ci left: 5.539094e-02	ci right 5.861628e-02	k: 4559	n:80000
Cons ci ratio: 1.009133e-01	ci left: 1.757748e-02	ci right 1.945766e-02	k: 1480	n:80000
KS ci ratio: 1.589834e-02	ci left: 4.283514e-01	ci right 4.352285e-01	k: 34543	n:80000
ZFP28   80000 perm   20 sec   (3908 perm/sec)   p_kst 4.317875e-01   p_cons 1.850000e-02   p_joint 5.698750e-02

Joint ci ratio: 5.563456e-02	ci left: 5.082150e-02	ci right 5.374078e-02	k: 4704	n:90000
Cons ci ratio: 9.471215e-02	ci left: 1.779241e-02	ci right 1.957213e-02	k: 1680	n:90000
KS ci ratio: 1.499011e-02	ci left: 4.285162e-01	ci right 4.349993e-01	k: 38858	n:90000
ZFP28   90000 perm   23 sec   (3872 perm/sec)   p_kst 4.317556e-01   p_cons 1.866667e-02   p_joint 5.226667e-02

Outputting figure to mutsig2_images.part000000000194/ZFP28.10_2639_90000_0.43176_0.018667_0.052267.png
                gene_name: ZFP28
               theta_stop: 0.095 
                    nperm: 90000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.051 
    ci_joint_bounds_right: 0.054 

Current progress: 13 percent done.
ZFP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.444763e-02	ci left: 5.544138e-01	ci right 5.739488e-01	k: 5642	n:10000
Cons ci ratio: 7.152117e-02	ci left: 2.226698e-01	ci right 2.392872e-01	k: 2309	n:10000
KS ci ratio: 3.595002e-02	ci left: 5.332753e-01	ci right 5.528996e-01	k: 5431	n:10000
ZFP3   10000 perm   2 sec   (5747 perm/sec)   p_kst 5.431000e-01   p_cons 2.309000e-01   p_joint 5.642000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP3.10_1513_10000_0.5431_0.2309_0.5642.png
                gene_name: ZFP3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 15 percent done.
ZFYVE9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.573306e-02	ci left: 8.543705e-01	ci right 8.680184e-01	k: 8613	n:10000
KS ci ratio: 1.325833e-02	ci left: 8.912866e-01	ci right 9.032809e-01	k: 8974	n:10000
ZFYVE9   10000 perm   2 sec   (4599 perm/sec)   p_kst 8.974000e-01   p_cons 8.613000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZFYVE9.10_4357_10000_0.8974_0.8613_1.png
                gene_name: ZFYVE9
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
ZHX2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.371700e-02	ci left: 4.358254e-01	ci right 4.554063e-01	k: 4456	n:10000
Cons ci ratio: 4.666725e-02	ci left: 4.039239e-01	ci right 4.233264e-01	k: 4136	n:10000
KS ci ratio: 4.996592e-02	ci left: 3.713681e-01	ci right 3.905013e-01	k: 3809	n:10000
ZHX2   10000 perm   2 sec   (5010 perm/sec)   p_kst 3.809000e-01   p_cons 4.136000e-01   p_joint 4.456000e-01

Outputting figure to mutsig2_images.part000000000194/ZHX2.10_2518_10000_0.3809_0.4136_0.4456.png
                gene_name: ZHX2
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 18 percent done.
ZIM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.081572e-01	ci left: 1.097862e-01	ci right 1.224384e-01	k: 1160	n:10000
Cons ci ratio: 1.428763e-01	ci left: 6.497832e-02	ci right 7.507390e-02	k: 699	n:10000
KS ci ratio: 4.994475e-02	ci left: 3.715671e-01	ci right 3.907022e-01	k: 3811	n:10000
ZIM3   10000 perm   2 sec   (5299 perm/sec)   p_kst 3.811000e-01   p_cons 6.990000e-02   p_joint 1.160000e-01

Joint ci ratio: 6.828811e-02	ci left: 1.365984e-01	ci right 1.463061e-01	k: 2828	n:20000
Cons ci ratio: 1.093238e-01	ci left: 5.708878e-02	ci right 6.373973e-02	k: 1207	n:20000
KS ci ratio: 3.574658e-02	ci left: 3.687324e-01	ci right 3.822038e-01	k: 7509	n:20000
ZIM3   20000 perm   4 sec   (4790 perm/sec)   p_kst 3.754500e-01   p_cons 6.035000e-02   p_joint 1.414000e-01

Joint ci ratio: 5.163227e-02	ci left: 1.569893e-01	ci right 1.653431e-01	k: 4834	n:30000
Cons ci ratio: 8.968531e-02	ci left: 5.717552e-02	ci right 6.257677e-02	k: 1795	n:30000
KS ci ratio: 2.914547e-02	ci left: 3.706473e-01	ci right 3.816433e-01	k: 11284	n:30000
ZIM3   30000 perm   7 sec   (4582 perm/sec)   p_kst 3.761333e-01   p_cons 5.983333e-02   p_joint 1.611333e-01

Outputting figure to mutsig2_images.part000000000194/ZIM3.10_1435_30000_0.37613_0.059833_0.16113.png
                gene_name: ZIM3
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 20 percent done.
ZFP112
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.496175e-02	ci left: 5.470984e-01	ci right 5.666684e-01	k: 5569	n:10000
Cons ci ratio: 4.557831e-02	ci left: 4.153838e-01	ci right 4.348599e-01	k: 4251	n:10000
KS ci ratio: 4.245653e-02	ci left: 4.502943e-01	ci right 4.699290e-01	k: 4601	n:10000
ZFP112   10000 perm   2 sec   (5198 perm/sec)   p_kst 4.601000e-01   p_cons 4.251000e-01   p_joint 5.569000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP112.9_2758_10000_0.4601_0.4251_0.5569.png
                gene_name: ZFP112
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 21 percent done.
ZFYVE26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.665833e-02	ci left: 5.235635e-01	ci right 5.432170e-01	k: 5334	n:10000
Cons ci ratio: 8.452535e-02	ci left: 1.694660e-01	ci right 1.845227e-01	k: 1769	n:10000
KS ci ratio: 9.085047e-03	ci left: 9.446095e-01	ci right 9.533266e-01	k: 9491	n:10000
ZFYVE26   10000 perm   3 sec   (3973 perm/sec)   p_kst 9.491000e-01   p_cons 1.769000e-01   p_joint 5.334000e-01

Outputting figure to mutsig2_images.part000000000194/ZFYVE26.8_7784_10000_0.9491_0.1769_0.5334.png
                gene_name: ZFYVE26
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 23 percent done.
ZHX3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.329228e-02	ci left: 5.711569e-01	ci right 5.905960e-01	k: 5809	n:10000
Cons ci ratio: 7.221246e-02	ci left: 2.193138e-01	ci right 2.358452e-01	k: 2275	n:10000
KS ci ratio: 6.301137e-03	ci left: 9.716422e-01	ci right 9.778770e-01	k: 9749	n:10000
ZHX3   10000 perm   2 sec   (5000 perm/sec)   p_kst 9.749000e-01   p_cons 2.275000e-01   p_joint 5.809000e-01

Outputting figure to mutsig2_images.part000000000194/ZHX3.8_2879_10000_0.9749_0.2275_0.5809.png
                gene_name: ZHX3
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 25 percent done.
ZIC4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.296881e-01	ci left: 2.504340e-02	ci right 3.163520e-02	k: 282	n:10000
Cons ci ratio: 6.346671e-01	ci left: 2.606439e-03	ci right 5.096391e-03	k: 37	n:10000
KS ci ratio: 7.468054e-02	ci left: 2.078695e-01	ci right 2.240963e-01	k: 2159	n:10000
ZIC4   10000 perm   2 sec   (5864 perm/sec)   p_kst 2.159000e-01   p_cons 3.700000e-03   p_joint 2.820000e-02

Joint ci ratio: 1.741732e-01	ci left: 2.254539e-02	ci right 2.689429e-02	k: 493	n:20000
Cons ci ratio: 3.852437e-01	ci left: 4.160297e-03	ci right 6.187672e-03	k: 102	n:20000
KS ci ratio: 5.290144e-02	ci left: 2.096697e-01	ci right 2.211131e-01	k: 4307	n:20000
ZIC4   20000 perm   4 sec   (5222 perm/sec)   p_kst 2.153500e-01   p_cons 5.100000e-03   p_joint 2.465000e-02

Joint ci ratio: 1.642437e-01	ci left: 1.710123e-02	ci right 2.019299e-02	k: 558	n:30000
Cons ci ratio: 3.160988e-01	ci left: 4.294810e-03	ci right 5.936614e-03	k: 152	n:30000
KS ci ratio: 4.326227e-02	ci left: 2.101970e-01	ci right 2.195250e-01	k: 6445	n:30000
ZIC4   30000 perm   6 sec   (4978 perm/sec)   p_kst 2.148333e-01   p_cons 5.066667e-03   p_joint 1.860000e-02

Joint ci ratio: 1.217774e-01	ci left: 2.371035e-02	ci right 2.680909e-02	k: 1009	n:40000
Cons ci ratio: 2.413810e-01	ci left: 5.759475e-03	ci right 7.363423e-03	k: 261	n:40000
KS ci ratio: 3.728861e-02	ci left: 2.124224e-01	ci right 2.205188e-01	k: 8658	n:40000
ZIC4   40000 perm   8 sec   (4817 perm/sec)   p_kst 2.164500e-01   p_cons 6.525000e-03   p_joint 2.522500e-02

Joint ci ratio: 9.791398e-02	ci left: 2.953716e-02	ci right 3.259761e-02	k: 1552	n:50000
Cons ci ratio: 2.131317e-01	ci left: 6.003702e-03	ci right 7.454459e-03	k: 335	n:50000
KS ci ratio: 3.340073e-02	ci left: 2.123598e-01	ci right 2.195932e-01	k: 10798	n:50000
ZIC4   50000 perm   11 sec   (4707 perm/sec)   p_kst 2.159600e-01   p_cons 6.700000e-03   p_joint 3.104000e-02

Joint ci ratio: 8.678778e-02	ci left: 3.145439e-02	ci right 3.432436e-02	k: 1972	n:60000
Cons ci ratio: 1.919901e-01	ci left: 6.237376e-03	ci right 7.577653e-03	k: 413	n:60000
KS ci ratio: 3.056701e-02	ci left: 2.118343e-01	ci right 2.184266e-01	k: 12907	n:60000
ZIC4   60000 perm   13 sec   (4602 perm/sec)   p_kst 2.151167e-01   p_cons 6.883333e-03   p_joint 3.286667e-02

Joint ci ratio: 8.098574e-02	ci left: 3.107260e-02	ci right 3.370920e-02	k: 2266	n:70000
Cons ci ratio: 1.788706e-01	ci left: 6.204576e-03	ci right 7.436839e-03	k: 476	n:70000
KS ci ratio: 2.832153e-02	ci left: 2.118192e-01	ci right 2.179187e-01	k: 15040	n:70000
ZIC4   70000 perm   16 sec   (4509 perm/sec)   p_kst 2.148571e-01   p_cons 6.800000e-03   p_joint 3.237143e-02

Joint ci ratio: 8.115504e-02	ci left: 2.718627e-02	ci right 2.949810e-02	k: 2266	n:80000
Cons ci ratio: 1.679621e-01	ci left: 6.194303e-03	ci right 7.341906e-03	k: 540	n:80000
KS ci ratio: 2.646464e-02	ci left: 2.123688e-01	ci right 2.180769e-01	k: 17217	n:80000
ZIC4   80000 perm   18 sec   (4424 perm/sec)   p_kst 2.152125e-01   p_cons 6.750000e-03   p_joint 2.832500e-02

Joint ci ratio: 7.676776e-02	ci left: 2.707362e-02	ci right 2.924582e-02	k: 2533	n:90000
Cons ci ratio: 1.558775e-01	ci left: 6.433648e-03	ci right 7.531824e-03	k: 627	n:90000
KS ci ratio: 2.491526e-02	ci left: 2.130165e-01	ci right 2.184019e-01	k: 19413	n:90000
ZIC4   90000 perm   21 sec   (4340 perm/sec)   p_kst 2.157000e-01   p_cons 6.966667e-03   p_joint 2.814444e-02

Joint ci ratio: 7.593117e-02	ci left: 2.497338e-02	ci right 2.695425e-02	k: 2595	n:100000
Cons ci ratio: 1.543329e-01	ci left: 5.915113e-03	ci right 6.913840e-03	k: 640	n:100000
KS ci ratio: 2.361166e-02	ci left: 2.135125e-01	ci right 2.186240e-01	k: 21606	n:100000
ZIC4   100000 perm   23 sec   (4259 perm/sec)   p_kst 2.160600e-01   p_cons 6.400000e-03   p_joint 2.595000e-02

Joint ci ratio: 6.723830e-02	ci left: 2.896400e-02	ci right 3.098815e-02	k: 3296	n:110000
Cons ci ratio: 1.480088e-01	ci left: 5.867203e-03	ci right 6.813653e-03	k: 696	n:110000
KS ci ratio: 2.253382e-02	ci left: 2.133176e-01	ci right 2.181883e-01	k: 23732	n:110000
ZIC4   110000 perm   26 sec   (4195 perm/sec)   p_kst 2.157455e-01   p_cons 6.327273e-03   p_joint 2.996364e-02

Joint ci ratio: 6.529600e-02	ci left: 2.820541e-02	ci right 3.011744e-02	k: 3498	n:120000
Cons ci ratio: 1.419298e-01	ci left: 5.868169e-03	ci right 6.772605e-03	k: 757	n:120000
KS ci ratio: 2.157213e-02	ci left: 2.134586e-01	ci right 2.181218e-01	k: 25894	n:120000
ZIC4   120000 perm   29 sec   (4135 perm/sec)   p_kst 2.157833e-01   p_cons 6.308333e-03   p_joint 2.915000e-02

Joint ci ratio: 6.665494e-02	ci left: 2.505088e-02	ci right 2.678574e-02	k: 3368	n:130000
Cons ci ratio: 1.362922e-01	ci left: 5.891954e-03	ci right 6.761057e-03	k: 821	n:130000
KS ci ratio: 2.073852e-02	ci left: 2.133441e-01	ci right 2.178225e-01	k: 28025	n:130000
ZIC4   130000 perm   32 sec   (4073 perm/sec)   p_kst 2.155769e-01   p_cons 6.315385e-03   p_joint 2.590769e-02

Joint ci ratio: 7.090664e-02	ci left: 2.060620e-02	ci right 2.212800e-02	k: 2990	n:140000
Cons ci ratio: 1.319533e-01	ci left: 5.850768e-03	ci right 6.684166e-03	k: 876	n:140000
KS ci ratio: 1.997817e-02	ci left: 2.135265e-01	ci right 2.178425e-01	k: 30195	n:140000
ZIC4   140000 perm   35 sec   (4002 perm/sec)   p_kst 2.156786e-01   p_cons 6.257143e-03   p_joint 2.135714e-02

Joint ci ratio: 5.665664e-02	ci left: 3.004975e-02	ci right 3.180845e-02	k: 4638	n:150000
Cons ci ratio: 1.287005e-01	ci left: 5.750916e-03	ci right 6.548354e-03	k: 921	n:150000
KS ci ratio: 1.904609e-02	ci left: 2.181117e-01	ci right 2.223124e-01	k: 33031	n:150000
ZIC4   150000 perm   38 sec   (3929 perm/sec)   p_kst 2.202067e-01   p_cons 6.140000e-03   p_joint 3.092000e-02

Joint ci ratio: 5.522293e-02	ci left: 2.968747e-02	ci right 3.137959e-02	k: 4884	n:160000
Cons ci ratio: 1.244526e-01	ci left: 5.778825e-03	ci right 6.551734e-03	k: 985	n:160000
KS ci ratio: 1.840317e-02	ci left: 2.188879e-01	ci right 2.229597e-01	k: 35347	n:160000
ZIC4   160000 perm   41 sec   (3860 perm/sec)   p_kst 2.209187e-01   p_cons 6.156250e-03   p_joint 3.052500e-02

Joint ci ratio: 5.601631e-02	ci left: 2.721510e-02	ci right 2.878929e-02	k: 4759	n:170000
Cons ci ratio: 1.207730e-01	ci left: 5.786714e-03	ci right 6.536160e-03	k: 1046	n:170000
KS ci ratio: 1.786019e-02	ci left: 2.188242e-01	ci right 2.227735e-01	k: 37535	n:170000
ZIC4   170000 perm   45 sec   (3795 perm/sec)   p_kst 2.207941e-01   p_cons 6.152941e-03   p_joint 2.799412e-02

Joint ci ratio: 5.491635e-02	ci left: 2.677128e-02	ci right 2.828843e-02	k: 4954	n:180000
Cons ci ratio: 1.174017e-01	ci left: 5.794026e-03	ci right 6.522017e-03	k: 1107	n:180000
KS ci ratio: 1.734802e-02	ci left: 2.190572e-01	ci right 2.228962e-01	k: 39775	n:180000
ZIC4   180000 perm   48 sec   (3737 perm/sec)   p_kst 2.209722e-01   p_cons 6.150000e-03   p_joint 2.752222e-02

Joint ci ratio: 5.660948e-02	ci left: 2.391849e-02	ci right 2.531711e-02	k: 4676	n:190000
Cons ci ratio: 1.137604e-01	ci left: 5.857081e-03	ci right 6.568638e-03	k: 1179	n:190000
KS ci ratio: 1.748149e-02	ci left: 2.074306e-01	ci right 2.110940e-01	k: 39759	n:190000
ZIC4   190000 perm   52 sec   (3682 perm/sec)   p_kst 2.092579e-01   p_cons 6.205263e-03   p_joint 2.461053e-02

Joint ci ratio: 5.596883e-02	ci left: 2.326954e-02	ci right 2.461431e-02	k: 4787	n:200000
Cons ci ratio: 1.204826e-01	ci left: 4.947672e-03	ci right 5.586796e-03	k: 1052	n:200000
KS ci ratio: 1.703618e-02	ci left: 2.075288e-01	ci right 2.110996e-01	k: 41862	n:200000
ZIC4   200000 perm   55 sec   (3619 perm/sec)   p_kst 2.093100e-01   p_cons 5.260000e-03   p_joint 2.393500e-02

Joint ci ratio: 5.591195e-02	ci left: 2.223156e-02	ci right 2.351499e-02	k: 4802	n:210000
Cons ci ratio: 1.177209e-01	ci left: 4.943070e-03	ci right 5.565944e-03	k: 1102	n:210000
KS ci ratio: 1.663689e-02	ci left: 2.073481e-01	ci right 2.108314e-01	k: 43908	n:210000
ZIC4   210000 perm   59 sec   (3571 perm/sec)   p_kst 2.090857e-01   p_cons 5.247619e-03   p_joint 2.286667e-02

Joint ci ratio: 5.546542e-02	ci left: 2.158389e-02	ci right 2.281965e-02	k: 4883	n:220000
Cons ci ratio: 1.149906e-01	ci left: 4.952284e-03	ci right 5.560863e-03	k: 1155	n:220000
KS ci ratio: 1.624142e-02	ci left: 2.076515e-01	ci right 2.110562e-01	k: 46057	n:220000
ZIC4   220000 perm   62 sec   (3525 perm/sec)   p_kst 2.093500e-01   p_cons 5.250000e-03   p_joint 2.219545e-02

Joint ci ratio: 5.434430e-02	ci left: 2.152022e-02	ci right 2.272665e-02	k: 5087	n:230000
Cons ci ratio: 1.120696e-01	ci left: 4.994660e-03	ci right 5.591825e-03	k: 1216	n:230000
KS ci ratio: 1.588600e-02	ci left: 2.076563e-01	ci right 2.109858e-01	k: 48143	n:230000
ZIC4   230000 perm   66 sec   (3478 perm/sec)   p_kst 2.093174e-01   p_cons 5.286957e-03   p_joint 2.211739e-02

Joint ci ratio: 5.296196e-02	ci left: 2.172529e-02	ci right 2.291129e-02	k: 5355	n:240000
Cons ci ratio: 1.092745e-01	ci left: 5.041790e-03	ci right 5.628588e-03	k: 1279	n:240000
KS ci ratio: 1.552986e-02	ci left: 2.081517e-01	ci right 2.114137e-01	k: 50347	n:240000
ZIC4   240000 perm   70 sec   (3433 perm/sec)   p_kst 2.097792e-01   p_cons 5.329167e-03   p_joint 2.231250e-02

Joint ci ratio: 5.208881e-02	ci left: 2.157467e-02	ci right 2.273245e-02	k: 5537	n:250000
Cons ci ratio: 1.074047e-01	ci left: 5.015237e-03	ci right 5.588324e-03	k: 1324	n:250000
KS ci ratio: 1.521552e-02	ci left: 2.081973e-01	ci right 2.113934e-01	k: 52448	n:250000
ZIC4   250000 perm   74 sec   (3390 perm/sec)   p_kst 2.097920e-01   p_cons 5.296000e-03   p_joint 2.214800e-02

Joint ci ratio: 5.242184e-02	ci left: 2.050164e-02	ci right 2.160907e-02	k: 5473	n:260000
Cons ci ratio: 1.052422e-01	ci left: 5.028258e-03	ci right 5.590549e-03	k: 1379	n:260000
KS ci ratio: 1.490776e-02	ci left: 2.085009e-01	ci right 2.116363e-01	k: 54617	n:260000
ZIC4   260000 perm   78 sec   (3347 perm/sec)   p_kst 2.100654e-01   p_cons 5.303846e-03   p_joint 2.105000e-02

Joint ci ratio: 5.166301e-02	ci left: 2.033812e-02	ci right 2.142035e-02	k: 5636	n:270000
Cons ci ratio: 1.034229e-01	ci left: 5.018770e-03	ci right 5.569709e-03	k: 1428	n:270000
KS ci ratio: 1.463393e-02	ci left: 2.084206e-01	ci right 2.114967e-01	k: 56688	n:270000
ZIC4   270000 perm   82 sec   (3305 perm/sec)   p_kst 2.099556e-01   p_cons 5.288889e-03   p_joint 2.087407e-02

Joint ci ratio: 5.111189e-02	ci left: 2.004885e-02	ci right 2.110396e-02	k: 5760	n:280000
Cons ci ratio: 1.014193e-01	ci left: 5.037888e-03	ci right 5.579572e-03	k: 1485	n:280000
KS ci ratio: 1.438241e-02	ci left: 2.081684e-01	ci right 2.111876e-01	k: 58709	n:280000
ZIC4   280000 perm   86 sec   (3265 perm/sec)   p_kst 2.096750e-01   p_cons 5.303571e-03   p_joint 2.057143e-02

Joint ci ratio: 5.028642e-02	ci left: 2.000777e-02	ci right 2.104322e-02	k: 5951	n:290000
Cons ci ratio: 9.972280e-02	ci left: 5.035606e-03	ci right 5.567458e-03	k: 1536	n:290000
KS ci ratio: 1.413546e-02	ci left: 2.081198e-01	ci right 2.110860e-01	k: 60784	n:290000
ZIC4   290000 perm   90 sec   (3225 perm/sec)   p_kst 2.096000e-01   p_cons 5.296552e-03   p_joint 2.052069e-02

Outputting figure to mutsig2_images.part000000000194/ZIC4.8_1278_290000_0.2096_0.0052966_0.020521.png
                gene_name: ZIC4
               theta_stop: 0.100 
                    nperm: 290000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.0053 
      ci_cons_bounds_left: 0.0050 
     ci_cons_bounds_right: 0.0056 
                  p_joint: 0.021 
     ci_joint_bounds_left: 0.020 
    ci_joint_bounds_right: 0.021 

Current progress: 26 percent done.
ZIK1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.360970e-01	ci left: 7.136438e-02	ci right 8.188384e-02	k: 765	n:10000
Cons ci ratio: 7.346716e-02	ci left: 2.133931e-01	ci right 2.297694e-01	k: 2215	n:10000
KS ci ratio: 1.333818e-01	ci left: 7.417406e-02	ci right 8.487241e-02	k: 794	n:10000
ZIK1   10000 perm   2 sec   (6022 perm/sec)   p_kst 7.940000e-02   p_cons 2.215000e-01   p_joint 7.650000e-02

Joint ci ratio: 1.053430e-01	ci left: 6.132920e-02	ci right 6.819800e-02	k: 1294	n:20000
Cons ci ratio: 5.182203e-02	ci left: 2.166523e-01	ci right 2.282285e-01	k: 4448	n:20000
KS ci ratio: 9.412430e-02	ci left: 7.603179e-02	ci right 8.359090e-02	k: 1595	n:20000
ZIK1   20000 perm   4 sec   (5408 perm/sec)   p_kst 7.975000e-02   p_cons 2.224000e-01   p_joint 6.470000e-02

Joint ci ratio: 8.703532e-02	ci left: 6.057029e-02	ci right 6.611464e-02	k: 1899	n:30000
Cons ci ratio: 4.247024e-02	ci left: 2.164476e-01	ci right 2.258731e-01	k: 6634	n:30000
KS ci ratio: 7.748761e-02	ci left: 7.554626e-02	ci right 8.166898e-02	k: 2357	n:30000
ZIK1   30000 perm   6 sec   (5155 perm/sec)   p_kst 7.856667e-02   p_cons 2.211333e-01   p_joint 6.330000e-02

Outputting figure to mutsig2_images.part000000000194/ZIK1.8_1480_30000_0.078567_0.22113_0.0633.png
                gene_name: ZIK1
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.079 
        ci_ks_bounds_left: 0.076 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.066 

Current progress: 28 percent done.
ZFP14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.527596e-02	ci left: 8.614127e-01	ci right 8.747721e-01	k: 8682	n:10000
KS ci ratio: 1.441687e-02	ci left: 8.743904e-01	ci right 8.871869e-01	k: 8809	n:10000
ZFP14   10000 perm   2 sec   (5633 perm/sec)   p_kst 8.809000e-01   p_cons 8.682000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZFP14.7_1618_10000_0.8809_0.8682_1.png
                gene_name: ZFP14
               theta_stop: 0.015 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.89 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
ZFP90
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.402247e-01	ci left: 1.087258e-02	ci right 1.541759e-02	k: 130	n:10000
Cons ci ratio: 8.756181e-01	ci left: 1.144300e-03	ci right 2.965502e-03	k: 19	n:10000
KS ci ratio: 2.347064e-02	ci left: 7.273436e-01	ci right 7.447187e-01	k: 7361	n:10000
ZFP90   10000 perm   2 sec   (5577 perm/sec)   p_kst 7.361000e-01   p_cons 1.900000e-03   p_joint 1.300000e-02

Joint ci ratio: 2.044404e-01	ci left: 1.620275e-02	ci right 1.993924e-02	k: 360	n:20000
Cons ci ratio: 7.402732e-01	ci left: 8.898411e-04	ci right 1.963576e-03	k: 27	n:20000
KS ci ratio: 1.735168e-02	ci left: 7.121604e-01	ci right 7.246761e-01	k: 14369	n:20000
ZFP90   20000 perm   4 sec   (5030 perm/sec)   p_kst 7.184500e-01   p_cons 1.350000e-03   p_joint 1.800000e-02

Joint ci ratio: 1.874555e-01	ci left: 1.301884e-02	ci right 1.574306e-02	k: 430	n:30000
Cons ci ratio: 6.354945e-01	ci left: 8.685245e-04	ci right 1.699591e-03	k: 37	n:30000
KS ci ratio: 1.417060e-02	ci left: 7.132392e-01	ci right 7.234518e-01	k: 21551	n:30000
ZFP90   30000 perm   6 sec   (4826 perm/sec)   p_kst 7.183667e-01   p_cons 1.233333e-03   p_joint 1.433333e-02

Joint ci ratio: 2.239687e-01	ci left: 6.748716e-03	ci right 8.473923e-03	k: 303	n:40000
Cons ci ratio: 5.540182e-01	ci left: 9.063949e-04	ci right 1.619195e-03	k: 49	n:40000
KS ci ratio: 1.232422e-02	ci left: 7.122058e-01	ci right 7.210627e-01	k: 28666	n:40000
ZFP90   40000 perm   9 sec   (4692 perm/sec)   p_kst 7.166500e-01   p_cons 1.225000e-03   p_joint 7.575000e-03

Joint ci ratio: 2.055676e-01	ci left: 6.477653e-03	ci right 7.980412e-03	k: 360	n:50000
Cons ci ratio: 5.189155e-01	ci left: 8.461434e-04	ci right 1.454170e-03	k: 56	n:50000
KS ci ratio: 1.100821e-02	ci left: 7.132300e-01	ci right 7.211448e-01	k: 35860	n:50000
ZFP90   50000 perm   11 sec   (4584 perm/sec)   p_kst 7.172000e-01   p_cons 1.120000e-03   p_joint 7.200000e-03

Joint ci ratio: 1.960856e-01	ci left: 5.967726e-03	ci right 7.280681e-03	k: 396	n:60000
Cons ci ratio: 4.897345e-01	ci left: 8.069402e-04	ci right 1.343209e-03	k: 63	n:60000
KS ci ratio: 9.986776e-03	ci left: 7.161040e-01	ci right 7.233081e-01	k: 43183	n:60000
ZFP90   60000 perm   13 sec   (4481 perm/sec)   p_kst 7.197167e-01   p_cons 1.050000e-03   p_joint 6.600000e-03

Joint ci ratio: 1.877983e-01	ci left: 5.604672e-03	ci right 6.779684e-03	k: 432	n:70000
Cons ci ratio: 4.554466e-01	ci left: 8.175199e-04	ci right 1.311060e-03	k: 73	n:70000
KS ci ratio: 9.272872e-03	ci left: 7.151953e-01	ci right 7.218723e-01	k: 50298	n:70000
ZFP90   70000 perm   16 sec   (4396 perm/sec)   p_kst 7.185429e-01   p_cons 1.042857e-03   p_joint 6.171429e-03

Joint ci ratio: 1.806702e-01	ci left: 5.321343e-03	ci right 6.389971e-03	k: 467	n:80000
Cons ci ratio: 4.274798e-01	ci left: 8.264451e-04	ci right 1.285977e-03	k: 83	n:80000
KS ci ratio: 8.654801e-03	ci left: 7.163101e-01	ci right 7.225490e-01	k: 57555	n:80000
ZFP90   80000 perm   19 sec   (4298 perm/sec)   p_kst 7.194375e-01   p_cons 1.037500e-03   p_joint 5.837500e-03

Joint ci ratio: 1.327963e-01	ci left: 8.951757e-03	ci right 1.023570e-02	k: 862	n:90000
Cons ci ratio: 3.937559e-01	ci left: 8.840983e-04	ci right 1.326849e-03	k: 98	n:90000
KS ci ratio: 8.145318e-03	ci left: 7.172100e-01	ci right 7.230869e-01	k: 64814	n:90000
ZFP90   90000 perm   21 sec   (4216 perm/sec)   p_kst 7.201556e-01   p_cons 1.088889e-03   p_joint 9.577778e-03

Joint ci ratio: 1.340407e-01	ci left: 7.911300e-03	ci right 9.057483e-03	k: 847	n:100000
Cons ci ratio: 3.823500e-01	ci left: 8.498320e-04	ci right 1.259995e-03	k: 104	n:100000
KS ci ratio: 7.725520e-03	ci left: 7.174565e-01	ci right 7.230307e-01	k: 72025	n:100000
ZFP90   100000 perm   24 sec   (4141 perm/sec)   p_kst 7.202500e-01   p_cons 1.040000e-03   p_joint 8.470000e-03

Joint ci ratio: 1.375687e-01	ci left: 6.822976e-03	ci right 7.839623e-03	k: 805	n:110000
Cons ci ratio: 3.653491e-01	ci left: 8.549459e-04	ci right 1.244859e-03	k: 114	n:110000
KS ci ratio: 7.368905e-03	ci left: 7.174275e-01	ci right 7.227427e-01	k: 79210	n:110000
ZFP90   110000 perm   27 sec   (4072 perm/sec)   p_kst 7.200909e-01   p_cons 1.036364e-03   p_joint 7.318182e-03

Joint ci ratio: 1.482622e-01	ci left: 5.362116e-03	ci right 6.228696e-03	k: 694	n:120000
Cons ci ratio: 3.449498e-01	ci left: 8.899694e-04	ci right 1.268142e-03	k: 128	n:120000
KS ci ratio: 7.055178e-03	ci left: 7.175421e-01	ci right 7.226306e-01	k: 86411	n:120000
ZFP90   120000 perm   30 sec   (4005 perm/sec)   p_kst 7.200917e-01   p_cons 1.066667e-03   p_joint 5.783333e-03

Joint ci ratio: 1.317701e-01	ci left: 6.315804e-03	ci right 7.214101e-03	k: 878	n:130000
Cons ci ratio: 3.576788e-01	ci left: 7.583769e-04	ci right 1.095296e-03	k: 119	n:130000
KS ci ratio: 6.782785e-03	ci left: 7.173808e-01	ci right 7.222709e-01	k: 93578	n:130000
ZFP90   130000 perm   33 sec   (3943 perm/sec)   p_kst 7.198308e-01   p_cons 9.153846e-04   p_joint 6.753846e-03

Joint ci ratio: 1.362399e-01	ci left: 5.477919e-03	ci right 6.285610e-03	k: 822	n:140000
Cons ci ratio: 3.436459e-01	ci left: 7.693474e-04	ci right 1.094752e-03	k: 129	n:140000
KS ci ratio: 6.534009e-03	ci left: 7.175970e-01	ci right 7.223082e-01	k: 100794	n:140000
ZFP90   140000 perm   36 sec   (3881 perm/sec)   p_kst 7.199571e-01   p_cons 9.214286e-04   p_joint 5.871429e-03

Joint ci ratio: 1.329760e-01	ci left: 5.376834e-03	ci right 6.149125e-03	k: 863	n:150000
Cons ci ratio: 3.265087e-01	ci left: 8.035460e-04	ci right 1.122918e-03	k: 143	n:150000
KS ci ratio: 6.313557e-03	ci left: 7.176066e-01	ci right 7.221582e-01	k: 107983	n:150000
ZFP90   150000 perm   39 sec   (3822 perm/sec)   p_kst 7.198867e-01   p_cons 9.533333e-04   p_joint 5.753333e-03

Joint ci ratio: 1.294333e-01	ci left: 5.330927e-03	ci right 6.074657e-03	k: 911	n:160000
Cons ci ratio: 3.136972e-01	ci left: 8.223024e-04	ci right 1.133737e-03	k: 155	n:160000
KS ci ratio: 6.119790e-03	ci left: 7.172353e-01	ci right 7.216443e-01	k: 115111	n:160000
ZFP90   160000 perm   42 sec   (3767 perm/sec)   p_kst 7.194438e-01   p_cons 9.687500e-04   p_joint 5.693750e-03

Joint ci ratio: 1.207730e-01	ci left: 5.786714e-03	ci right 6.536160e-03	k: 1046	n:170000
Cons ci ratio: 2.834810e-01	ci left: 9.644418e-04	ci right 1.288252e-03	k: 190	n:170000
KS ci ratio: 5.935031e-03	ci left: 7.174403e-01	ci right 7.217169e-01	k: 122329	n:170000
ZFP90   170000 perm   46 sec   (3711 perm/sec)   p_kst 7.195824e-01   p_cons 1.117647e-03   p_joint 6.152941e-03

Joint ci ratio: 1.183184e-01	ci left: 5.702350e-03	ci right 6.424808e-03	k: 1090	n:180000
Cons ci ratio: 2.763403e-01	ci left: 9.625182e-04	ci right 1.276128e-03	k: 200	n:180000
KS ci ratio: 5.766133e-03	ci left: 7.176188e-01	ci right 7.217741e-01	k: 129546	n:180000
ZFP90   180000 perm   49 sec   (3656 perm/sec)   p_kst 7.197000e-01   p_cons 1.111111e-03   p_joint 6.055556e-03

Joint ci ratio: 1.243868e-01	ci left: 4.876436e-03	ci right 5.528275e-03	k: 987	n:190000
Cons ci ratio: 2.729705e-01	ci left: 9.363612e-04	ci right 1.237090e-03	k: 205	n:190000
KS ci ratio: 5.609414e-03	ci left: 7.178854e-01	ci right 7.219289e-01	k: 136783	n:190000
ZFP90   190000 perm   53 sec   (3606 perm/sec)   p_kst 7.199105e-01   p_cons 1.078947e-03   p_joint 5.194737e-03

Joint ci ratio: 1.220062e-01	ci left: 4.821596e-03	ci right 5.452878e-03	k: 1026	n:200000
Cons ci ratio: 2.653505e-01	ci left: 9.454958e-04	ci right 1.239273e-03	k: 217	n:200000
KS ci ratio: 5.468066e-03	ci left: 7.178862e-01	ci right 7.218274e-01	k: 143972	n:200000
ZFP90   200000 perm   56 sec   (3553 perm/sec)   p_kst 7.198600e-01   p_cons 1.085000e-03   p_joint 5.130000e-03

Joint ci ratio: 1.192522e-01	ci left: 4.813670e-03	ci right 5.428684e-03	k: 1074	n:210000
Cons ci ratio: 2.572178e-01	ci left: 9.627747e-04	ci right 1.251281e-03	k: 231	n:210000
KS ci ratio: 5.339033e-03	ci left: 7.177259e-01	ci right 7.215728e-01	k: 151127	n:210000
ZFP90   210000 perm   60 sec   (3499 perm/sec)   p_kst 7.196524e-01   p_cons 1.100000e-03   p_joint 5.114286e-03

Joint ci ratio: 1.211491e-01	ci left: 4.449325e-03	ci right 5.027479e-03	k: 1041	n:220000
Cons ci ratio: 2.534254e-01	ci left: 9.487935e-04	ci right 1.228256e-03	k: 238	n:220000
KS ci ratio: 5.214549e-03	ci left: 7.179046e-01	ci right 7.216624e-01	k: 158353	n:220000
ZFP90   220000 perm   64 sec   (3451 perm/sec)   p_kst 7.197864e-01   p_cons 1.081818e-03   p_joint 4.731818e-03

Joint ci ratio: 1.038146e-01	ci left: 5.840907e-03	ci right 6.484677e-03	k: 1416	n:230000
Cons ci ratio: 2.487855e-01	ci left: 9.442095e-04	ci right 1.216442e-03	k: 247	n:230000
KS ci ratio: 5.095250e-03	ci left: 7.183169e-01	ci right 7.219906e-01	k: 165636	n:230000
ZFP90   230000 perm   68 sec   (3404 perm/sec)   p_kst 7.201565e-01   p_cons 1.073913e-03   p_joint 6.156522e-03

Joint ci ratio: 1.017538e-01	ci left: 5.832989e-03	ci right 6.462361e-03	k: 1474	n:240000
Cons ci ratio: 2.411261e-01	ci left: 9.674444e-04	ci right 1.236504e-03	k: 263	n:240000
KS ci ratio: 4.987587e-03	ci left: 7.183868e-01	ci right 7.219829e-01	k: 172845	n:240000
ZFP90   240000 perm   71 sec   (3360 perm/sec)   p_kst 7.201875e-01   p_cons 1.095833e-03   p_joint 6.141667e-03

Joint ci ratio: 1.208928e-01	ci left: 3.934738e-03	ci right 4.444863e-03	k: 1046	n:250000
Cons ci ratio: 2.366856e-01	ci left: 9.663524e-04	ci right 1.229434e-03	k: 273	n:250000
KS ci ratio: 4.233716e-03	ci left: 7.725799e-01	ci right 7.758617e-01	k: 193556	n:250000
ZFP90   250000 perm   75 sec   (3316 perm/sec)   p_kst 7.742240e-01   p_cons 1.092000e-03   p_joint 4.184000e-03

Joint ci ratio: 1.197032e-01	ci left: 3.861731e-03	ci right 4.357116e-03	k: 1067	n:260000
Cons ci ratio: 2.308598e-01	ci left: 9.798788e-04	ci right 1.239141e-03	k: 287	n:260000
KS ci ratio: 4.149730e-03	ci left: 7.727614e-01	ci right 7.759786e-01	k: 201337	n:260000
ZFP90   260000 perm   79 sec   (3273 perm/sec)   p_kst 7.743731e-01   p_cons 1.103846e-03   p_joint 4.103846e-03

Joint ci ratio: 1.174697e-01	ci left: 3.866052e-03	ci right 4.352095e-03	k: 1108	n:270000
Cons ci ratio: 2.273359e-01	ci left: 9.750071e-04	ci right 1.228490e-03	k: 296	n:270000
KS ci ratio: 4.071585e-03	ci left: 7.728409e-01	ci right 7.759977e-01	k: 209094	n:270000
ZFP90   270000 perm   83 sec   (3235 perm/sec)   p_kst 7.744222e-01   p_cons 1.096296e-03   p_joint 4.103704e-03

Joint ci ratio: 1.173721e-01	ci left: 3.734897e-03	ci right 4.204033e-03	k: 1110	n:280000
Cons ci ratio: 2.228775e-01	ci left: 9.806264e-04	ci right 1.229885e-03	k: 308	n:280000
KS ci ratio: 3.997818e-03	ci left: 7.729045e-01	ci right 7.760041e-01	k: 216848	n:280000
ZFP90   280000 perm   88 sec   (3200 perm/sec)   p_kst 7.744571e-01   p_cons 1.100000e-03   p_joint 3.964286e-03

Joint ci ratio: 1.164889e-01	ci left: 3.663006e-03	ci right 4.119410e-03	k: 1127	n:290000
Cons ci ratio: 2.200484e-01	ci left: 9.728673e-04	ci right 1.216590e-03	k: 316	n:290000
KS ci ratio: 3.930052e-03	ci left: 7.727740e-01	ci right 7.758205e-01	k: 224547	n:290000
ZFP90   290000 perm   92 sec   (3165 perm/sec)   p_kst 7.743000e-01   p_cons 1.089655e-03   p_joint 3.886207e-03

Joint ci ratio: 1.158794e-01	ci left: 3.579734e-03	ci right 4.023269e-03	k: 1139	n:300000
Cons ci ratio: 2.166580e-01	ci left: 9.719488e-04	ci right 1.211190e-03	k: 326	n:300000
KS ci ratio: 3.865544e-03	ci left: 7.726594e-01	ci right 7.756553e-01	k: 232248	n:300000
ZFP90   300000 perm   96 sec   (3130 perm/sec)   p_kst 7.741600e-01   p_cons 1.086667e-03   p_joint 3.796667e-03

Joint ci ratio: 1.146317e-01	ci left: 3.542575e-03	ci right 3.976460e-03	k: 1164	n:310000
Cons ci ratio: 2.140564e-01	ci left: 9.650098e-04	ci right 1.199316e-03	k: 334	n:310000
KS ci ratio: 3.799514e-03	ci left: 7.729762e-01	ci right 7.759219e-01	k: 240080	n:310000
ZFP90   310000 perm   100 sec   (3097 perm/sec)   p_kst 7.744516e-01   p_cons 1.077419e-03   p_joint 3.754839e-03

Joint ci ratio: 1.058744e-01	ci left: 4.039713e-03	ci right 4.494337e-03	k: 1364	n:320000
Cons ci ratio: 2.115463e-01	ci left: 9.585206e-04	ci right 1.188169e-03	k: 342	n:320000
KS ci ratio: 3.737752e-03	ci left: 7.731795e-01	ci right 7.760780e-01	k: 247882	n:320000
ZFP90   320000 perm   104 sec   (3064 perm/sec)   p_kst 7.746312e-01   p_cons 1.068750e-03   p_joint 4.262500e-03

Joint ci ratio: 1.055325e-01	ci left: 3.943839e-03	ci right 4.386151e-03	k: 1373	n:330000
Cons ci ratio: 2.085286e-01	ci left: 9.581837e-04	ci right 1.184058e-03	k: 352	n:330000
KS ci ratio: 3.681812e-03	ci left: 7.730945e-01	ci right 7.759491e-01	k: 255593	n:330000
ZFP90   330000 perm   109 sec   (3024 perm/sec)   p_kst 7.745242e-01   p_cons 1.066667e-03   p_joint 4.160606e-03

Joint ci ratio: 1.039187e-01	ci left: 3.951002e-03	ci right 4.386927e-03	k: 1416	n:340000
Cons ci ratio: 2.047911e-01	ci left: 9.662590e-04	ci right 1.189444e-03	k: 365	n:340000
KS ci ratio: 3.629531e-03	ci left: 7.728969e-01	ci right 7.757102e-01	k: 263264	n:340000
ZFP90   340000 perm   114 sec   (2990 perm/sec)   p_kst 7.743059e-01   p_cons 1.073529e-03   p_joint 4.164706e-03

Joint ci ratio: 1.028375e-01	ci left: 3.921611e-03	ci right 4.349520e-03	k: 1446	n:350000
Cons ci ratio: 2.031342e-01	ci left: 9.549183e-04	ci right 1.173478e-03	k: 371	n:350000
KS ci ratio: 3.578126e-03	ci left: 7.728369e-01	ci right 7.756100e-01	k: 270979	n:350000
ZFP90   350000 perm   118 sec   (2957 perm/sec)   p_kst 7.742257e-01   p_cons 1.060000e-03   p_joint 4.131429e-03

Joint ci ratio: 1.013767e-01	ci left: 3.926365e-03	ci right 4.348345e-03	k: 1488	n:360000
Cons ci ratio: 2.004579e-01	ci left: 9.547671e-04	ci right 1.170060e-03	k: 381	n:360000
KS ci ratio: 3.529096e-03	ci left: 7.727555e-01	ci right 7.754901e-01	k: 278685	n:360000
ZFP90   360000 perm   123 sec   (2925 perm/sec)   p_kst 7.741250e-01   p_cons 1.058333e-03   p_joint 4.133333e-03

Joint ci ratio: 1.020730e-01	ci left: 3.767553e-03	ci right 4.175411e-03	k: 1468	n:370000
Cons ci ratio: 1.981379e-01	ci left: 9.520730e-04	ci right 1.163974e-03	k: 390	n:370000
KS ci ratio: 3.481247e-03	ci left: 7.727572e-01	ci right 7.754547e-01	k: 286420	n:370000
ZFP90   370000 perm   128 sec   (2893 perm/sec)   p_kst 7.741081e-01   p_cons 1.054054e-03   p_joint 3.967568e-03

Joint ci ratio: 1.007445e-01	ci left: 3.768435e-03	ci right 4.170766e-03	k: 1507	n:380000
Cons ci ratio: 1.961421e-01	ci left: 9.470317e-04	ci right 1.155434e-03	k: 398	n:380000
KS ci ratio: 3.434595e-03	ci left: 7.728303e-01	ci right 7.754918e-01	k: 294182	n:380000
ZFP90   380000 perm   133 sec   (2862 perm/sec)   p_kst 7.741632e-01   p_cons 1.047368e-03   p_joint 3.965789e-03

Joint ci ratio: 9.483839e-02	ci left: 4.154625e-03	ci right 4.570740e-03	k: 1700	n:390000
Cons ci ratio: 1.937296e-01	ci left: 9.471384e-04	ci right 1.152698e-03	k: 408	n:390000
KS ci ratio: 3.389819e-03	ci left: 7.728947e-01	ci right 7.755217e-01	k: 301942	n:390000
ZFP90   390000 perm   138 sec   (2831 perm/sec)   p_kst 7.742103e-01   p_cons 1.046154e-03   p_joint 4.358974e-03

Joint ci ratio: 9.434359e-02	ci left: 4.094689e-03	ci right 4.502543e-03	k: 1718	n:400000
Cons ci ratio: 1.907217e-01	ci left: 9.543963e-04	ci right 1.157943e-03	k: 421	n:400000
KS ci ratio: 3.348042e-03	ci left: 7.728209e-01	ci right 7.754151e-01	k: 309648	n:400000
ZFP90   400000 perm   143 sec   (2800 perm/sec)   p_kst 7.741200e-01   p_cons 1.052500e-03   p_joint 4.295000e-03

Joint ci ratio: 9.276325e-02	ci left: 4.135358e-03	ci right 4.539989e-03	k: 1777	n:410000
Cons ci ratio: 1.874188e-01	ci left: 9.659727e-04	ci right 1.168014e-03	k: 436	n:410000
KS ci ratio: 3.307680e-03	ci left: 7.727606e-01	ci right 7.753233e-01	k: 317358	n:410000
ZFP90   410000 perm   148 sec   (2772 perm/sec)   p_kst 7.740439e-01   p_cons 1.063415e-03   p_joint 4.334146e-03

Joint ci ratio: 9.183897e-02	ci left: 4.120632e-03	ci right 4.519588e-03	k: 1813	n:420000
Cons ci ratio: 1.853107e-01	ci left: 9.656721e-04	ci right 1.165124e-03	k: 446	n:420000
KS ci ratio: 3.267897e-03	ci left: 7.727941e-01	ci right 7.753260e-01	k: 325106	n:420000
ZFP90   420000 perm   153 sec   (2743 perm/sec)   p_kst 7.740619e-01   p_cons 1.061905e-03   p_joint 4.316667e-03

Joint ci ratio: 9.550818e-02	ci left: 3.715893e-03	ci right 4.090840e-03	k: 1677	n:430000
Cons ci ratio: 1.834732e-01	ci left: 9.631786e-04	ci right 1.159923e-03	k: 455	n:430000
KS ci ratio: 3.230311e-03	ci left: 7.727399e-01	ci right 7.752424e-01	k: 332817	n:430000
ZFP90   430000 perm   158 sec   (2715 perm/sec)   p_kst 7.739930e-01   p_cons 1.058140e-03   p_joint 3.900000e-03

Joint ci ratio: 9.676500e-02	ci left: 3.536048e-03	ci right 3.897809e-03	k: 1634	n:440000
Cons ci ratio: 1.816894e-01	ci left: 9.608078e-04	ci right 1.154950e-03	k: 464	n:440000
KS ci ratio: 3.193494e-03	ci left: 7.727430e-01	ci right 7.752170e-01	k: 340552	n:440000
ZFP90   440000 perm   164 sec   (2686 perm/sec)   p_kst 7.739818e-01   p_cons 1.054545e-03   p_joint 3.713636e-03

Joint ci ratio: 9.537397e-02	ci left: 3.561575e-03	ci right 3.920417e-03	k: 1682	n:450000
Cons ci ratio: 1.786409e-01	ci left: 9.734092e-04	ci right 1.166441e-03	k: 480	n:450000
KS ci ratio: 3.159192e-03	ci left: 7.726037e-01	ci right 7.750505e-01	k: 348223	n:450000
ZFP90   450000 perm   169 sec   (2657 perm/sec)   p_kst 7.738289e-01   p_cons 1.066667e-03   p_joint 3.737778e-03

Joint ci ratio: 9.498218e-02	ci left: 3.513856e-03	ci right 3.866354e-03	k: 1696	n:460000
Cons ci ratio: 1.759181e-01	ci left: 9.834104e-04	ci right 1.175137e-03	k: 495	n:460000
KS ci ratio: 3.124126e-03	ci left: 7.726775e-01	ci right 7.750973e-01	k: 355989	n:460000
ZFP90   460000 perm   175 sec   (2628 perm/sec)   p_kst 7.738891e-01   p_cons 1.076087e-03   p_joint 3.686957e-03

Joint ci ratio: 9.498592e-02	ci left: 3.439086e-03	ci right 3.784099e-03	k: 1696	n:470000
Cons ci ratio: 1.739992e-01	ci left: 9.848662e-04	ci right 1.174562e-03	k: 506	n:470000
KS ci ratio: 3.089376e-03	ci left: 7.728420e-01	ci right 7.752354e-01	k: 363799	n:470000
ZFP90   470000 perm   181 sec   (2602 perm/sec)   p_kst 7.740404e-01   p_cons 1.076596e-03   p_joint 3.608511e-03

Joint ci ratio: 8.502926e-02	ci left: 4.220834e-03	ci right 4.597687e-03	k: 2115	n:480000
Cons ci ratio: 1.714802e-01	ci left: 9.942475e-04	ci right 1.182691e-03	k: 521	n:480000
KS ci ratio: 3.057215e-03	ci left: 7.728329e-01	ci right 7.752013e-01	k: 371529	n:480000
ZFP90   480000 perm   186 sec   (2577 perm/sec)   p_kst 7.740187e-01   p_cons 1.085417e-03   p_joint 4.406250e-03

Joint ci ratio: 8.471204e-02	ci left: 4.166649e-03	ci right 4.537208e-03	k: 2131	n:490000
Cons ci ratio: 1.698611e-01	ci left: 9.934932e-04	ci right 1.179834e-03	k: 531	n:490000
KS ci ratio: 3.025526e-03	ci left: 7.728836e-01	ci right 7.752275e-01	k: 379288	n:490000
ZFP90   490000 perm   192 sec   (2555 perm/sec)   p_kst 7.740571e-01   p_cons 1.083673e-03   p_joint 4.348980e-03

Joint ci ratio: 8.398695e-02	ci left: 4.155754e-03	ci right 4.522026e-03	k: 2168	n:500000
Cons ci ratio: 1.690695e-01	ci left: 9.831987e-04	ci right 1.166661e-03	k: 536	n:500000
KS ci ratio: 2.995230e-03	ci left: 7.728822e-01	ci right 7.752026e-01	k: 387022	n:500000
ZFP90   500000 perm   197 sec   (2532 perm/sec)   p_kst 7.740440e-01   p_cons 1.072000e-03   p_joint 4.336000e-03

Joint ci ratio: 8.326122e-02	ci left: 4.147220e-03	ci right 4.509427e-03	k: 2206	n:510000
Cons ci ratio: 1.682888e-01	ci left: 9.733099e-04	ci right 1.154004e-03	k: 541	n:510000
KS ci ratio: 2.965411e-03	ci left: 7.729301e-01	ci right 7.752275e-01	k: 394781	n:510000
ZFP90   510000 perm   203 sec   (2510 perm/sec)   p_kst 7.740804e-01   p_cons 1.060784e-03   p_joint 4.325490e-03

Joint ci ratio: 8.244340e-02	ci left: 4.150328e-03	ci right 4.509075e-03	k: 2250	n:520000
Cons ci ratio: 1.669090e-01	ci left: 9.711740e-04	ci right 1.149844e-03	k: 550	n:520000
KS ci ratio: 2.936563e-03	ci left: 7.729648e-01	ci right 7.752399e-01	k: 402534	n:520000
ZFP90   520000 perm   209 sec   (2489 perm/sec)   p_kst 7.741038e-01   p_cons 1.057692e-03   p_joint 4.326923e-03

Joint ci ratio: 8.484597e-02	ci left: 3.841077e-03	ci right 4.183248e-03	k: 2125	n:530000
Cons ci ratio: 1.654148e-01	ci left: 9.709333e-04	ci right 1.147801e-03	k: 560	n:530000
KS ci ratio: 2.908492e-03	ci left: 7.730039e-01	ci right 7.752573e-01	k: 410290	n:530000
ZFP90   530000 perm   215 sec   (2467 perm/sec)   p_kst 7.741321e-01   p_cons 1.056604e-03   p_joint 4.009434e-03

Joint ci ratio: 8.609812e-02	ci left: 3.659383e-03	ci right 3.990420e-03	k: 2064	n:540000
Cons ci ratio: 1.639600e-01	ci left: 9.707083e-04	ci right 1.145827e-03	k: 570	n:540000
KS ci ratio: 2.880159e-03	ci left: 7.731696e-01	ci right 7.754015e-01	k: 418115	n:540000
ZFP90   540000 perm   221 sec   (2445 perm/sec)   p_kst 7.742870e-01   p_cons 1.055556e-03   p_joint 3.822222e-03

Joint ci ratio: 8.535747e-02	ci left: 3.656900e-03	ci right 3.984725e-03	k: 2100	n:550000
Cons ci ratio: 1.628237e-01	ci left: 9.670096e-04	ci right 1.140133e-03	k: 578	n:550000
KS ci ratio: 2.853379e-03	ci left: 7.732384e-01	ci right 7.754496e-01	k: 425890	n:550000
ZFP90   550000 perm   227 sec   (2422 perm/sec)   p_kst 7.743455e-01   p_cons 1.050909e-03   p_joint 3.818182e-03

Joint ci ratio: 8.614590e-02	ci left: 3.525186e-03	ci right 3.844269e-03	k: 2062	n:560000
Cons ci ratio: 1.614357e-01	ci left: 9.668742e-04	ci right 1.138355e-03	k: 588	n:560000
KS ci ratio: 2.828473e-03	ci left: 7.731634e-01	ci right 7.753552e-01	k: 433586	n:560000
ZFP90   560000 perm   233 sec   (2401 perm/sec)   p_kst 7.742607e-01   p_cons 1.050000e-03   p_joint 3.682143e-03

Joint ci ratio: 8.001554e-02	ci left: 4.025161e-03	ci right 4.362365e-03	k: 2389	n:570000
Cons ci ratio: 1.600825e-01	ci left: 9.667496e-04	ci right 1.136633e-03	k: 598	n:570000
KS ci ratio: 2.803758e-03	ci left: 7.731475e-01	ci right 7.753199e-01	k: 441314	n:570000
ZFP90   570000 perm   240 sec   (2379 perm/sec)   p_kst 7.742351e-01   p_cons 1.049123e-03   p_joint 4.191228e-03

Joint ci ratio: 7.691324e-02	ci left: 4.287086e-03	ci right 4.631686e-03	k: 2585	n:580000
Cons ci ratio: 1.779234e-01	ci left: 7.618126e-04	ci right 9.122110e-04	k: 484	n:580000
KS ci ratio: 2.779021e-03	ci left: 7.732150e-01	ci right 7.753685e-01	k: 449090	n:580000
ZFP90   580000 perm   246 sec   (2357 perm/sec)   p_kst 7.742931e-01   p_cons 8.344828e-04   p_joint 4.456897e-03

Joint ci ratio: 7.636934e-02	ci left: 4.275933e-03	ci right 4.617097e-03	k: 2622	n:590000
Cons ci ratio: 1.766534e-01	ci left: 7.602384e-04	ci right 9.091402e-04	k: 491	n:590000
KS ci ratio: 2.755996e-03	ci left: 7.731445e-01	ci right 7.752799e-01	k: 456786	n:590000
ZFP90   590000 perm   253 sec   (2336 perm/sec)   p_kst 7.742136e-01   p_cons 8.322034e-04   p_joint 4.444068e-03

Joint ci ratio: 7.582250e-02	ci left: 4.266794e-03	ci right 4.604685e-03	k: 2660	n:600000
Cons ci ratio: 1.752345e-01	ci left: 7.603139e-04	ci right 9.079078e-04	k: 499	n:600000
KS ci ratio: 2.733091e-03	ci left: 7.731332e-01	ci right 7.752508e-01	k: 464516	n:600000
ZFP90   600000 perm   259 sec   (2315 perm/sec)   p_kst 7.741933e-01   p_cons 8.316667e-04   p_joint 4.433333e-03

Joint ci ratio: 7.513360e-02	ci left: 4.275659e-03	ci right 4.611041e-03	k: 2709	n:610000
Cons ci ratio: 1.736783e-01	ci left: 7.619597e-04	ci right 9.084217e-04	k: 508	n:610000
KS ci ratio: 2.711256e-03	ci left: 7.730567e-01	ci right 7.751571e-01	k: 472206	n:610000
ZFP90   610000 perm   266 sec   (2295 perm/sec)   p_kst 7.741082e-01   p_cons 8.327869e-04   p_joint 4.440984e-03

Joint ci ratio: 7.462634e-02	ci left: 4.265256e-03	ci right 4.597465e-03	k: 2746	n:620000
Cons ci ratio: 1.721628e-01	ci left: 7.635579e-04	ci right 9.089134e-04	k: 517	n:620000
KS ci ratio: 2.689254e-03	ci left: 7.730716e-01	ci right 7.751549e-01	k: 479951	n:620000
ZFP90   620000 perm   272 sec   (2276 perm/sec)   p_kst 7.741145e-01   p_cons 8.338710e-04   p_joint 4.429032e-03

Joint ci ratio: 7.402246e-02	ci left: 4.267655e-03	ci right 4.597245e-03	k: 2791	n:630000
Cons ci ratio: 1.703631e-01	ci left: 7.681500e-04	ci right 9.126941e-04	k: 528	n:630000
KS ci ratio: 2.668118e-03	ci left: 7.730415e-01	ci right 7.751084e-01	k: 487668	n:630000
ZFP90   630000 perm   279 sec   (2258 perm/sec)   p_kst 7.740762e-01   p_cons 8.380952e-04   p_joint 4.430159e-03

Joint ci ratio: 7.487831e-02	ci left: 4.104355e-03	ci right 4.425158e-03	k: 2728	n:640000
Cons ci ratio: 1.694054e-01	ci left: 7.651240e-04	ci right 9.082066e-04	k: 534	n:640000
KS ci ratio: 2.647271e-03	ci left: 7.730390e-01	ci right 7.750897e-01	k: 495402	n:640000
ZFP90   640000 perm   286 sec   (2240 perm/sec)   p_kst 7.740656e-01   p_cons 8.343750e-04   p_joint 4.262500e-03

Joint ci ratio: 7.422806e-02	ci left: 4.113681e-03	ci right 4.432300e-03	k: 2776	n:650000
Cons ci ratio: 1.681529e-01	ci left: 7.651406e-04	ci right 9.070613e-04	k: 542	n:650000
KS ci ratio: 2.626466e-03	ci left: 7.730953e-01	ci right 7.751300e-01	k: 503174	n:650000
ZFP90   650000 perm   293 sec   (2221 perm/sec)   p_kst 7.741138e-01   p_cons 8.338462e-04   p_joint 4.270769e-03

Joint ci ratio: 7.385748e-02	ci left: 4.092990e-03	ci right 4.408356e-03	k: 2804	n:660000
Cons ci ratio: 1.669278e-01	ci left: 7.651606e-04	ci right 9.059469e-04	k: 550	n:660000
KS ci ratio: 2.606483e-03	ci left: 7.731044e-01	ci right 7.751235e-01	k: 510916	n:660000
ZFP90   660000 perm   300 sec   (2203 perm/sec)   p_kst 7.741152e-01   p_cons 8.333333e-04   p_joint 4.248485e-03

Joint ci ratio: 7.366230e-02	ci left: 4.053873e-03	ci right 4.365363e-03	k: 2819	n:670000
Cons ci ratio: 1.663257e-01	ci left: 7.594613e-04	ci right 8.986445e-04	k: 554	n:670000
KS ci ratio: 2.587291e-03	ci left: 7.730669e-01	ci right 7.750711e-01	k: 518627	n:670000
ZFP90   670000 perm   307 sec   (2185 perm/sec)   p_kst 7.740701e-01   p_cons 8.268657e-04   p_joint 4.207463e-03

Joint ci ratio: 7.512304e-02	ci left: 3.838372e-03	ci right 4.139408e-03	k: 2711	n:680000
Cons ci ratio: 1.642661e-01	ci left: 7.680296e-04	ci right 9.068679e-04	k: 568	n:680000
KS ci ratio: 2.567621e-03	ci left: 7.731528e-01	ci right 7.751419e-01	k: 526421	n:680000
ZFP90   680000 perm   314 sec   (2166 perm/sec)   p_kst 7.741485e-01   p_cons 8.352941e-04   p_joint 3.986765e-03

Joint ci ratio: 7.500038e-02	ci left: 3.795539e-03	ci right 4.092708e-03	k: 2720	n:690000
Cons ci ratio: 1.635495e-01	ci left: 7.638477e-04	ci right 9.012684e-04	k: 573	n:690000
KS ci ratio: 2.548541e-03	ci left: 7.732159e-01	ci right 7.751904e-01	k: 534201	n:690000
ZFP90   690000 perm   321 sec   (2150 perm/sec)   p_kst 7.742043e-01   p_cons 8.304348e-04   p_joint 3.942029e-03

Joint ci ratio: 7.446863e-02	ci left: 3.795990e-03	ci right 4.090996e-03	k: 2759	n:700000
Cons ci ratio: 1.625614e-01	ci left: 7.625275e-04	ci right 8.988009e-04	k: 580	n:700000
KS ci ratio: 2.529848e-03	ci left: 7.732816e-01	ci right 7.752418e-01	k: 541984	n:700000
ZFP90   700000 perm   328 sec   (2134 perm/sec)   p_kst 7.742629e-01   p_cons 8.285714e-04   p_joint 3.941429e-03

Joint ci ratio: 7.441659e-02	ci left: 3.748051e-03	ci right 4.039119e-03	k: 2763	n:710000
Cons ci ratio: 1.615910e-01	ci left: 7.612469e-04	ci right 8.964005e-04	k: 587	n:710000
KS ci ratio: 2.512269e-03	ci left: 7.732468e-01	ci right 7.751932e-01	k: 549697	n:710000
ZFP90   710000 perm   335 sec   (2118 perm/sec)   p_kst 7.742211e-01   p_cons 8.267606e-04   p_joint 3.891549e-03

Joint ci ratio: 7.392355e-02	ci left: 3.746430e-03	ci right 4.035362e-03	k: 2800	n:720000
Cons ci ratio: 1.601001e-01	ci left: 7.653370e-04	ci right 8.998426e-04	k: 598	n:720000
KS ci ratio: 2.494892e-03	ci left: 7.732352e-01	ci right 7.751681e-01	k: 557426	n:720000
ZFP90   720000 perm   343 sec   (2100 perm/sec)   p_kst 7.742028e-01   p_cons 8.305556e-04   p_joint 3.888889e-03

Joint ci ratio: 7.355736e-02	ci left: 3.732757e-03	ci right 4.019147e-03	k: 2828	n:730000
Cons ci ratio: 1.595687e-01	ci left: 7.601130e-04	ci right 8.932146e-04	k: 602	n:730000
KS ci ratio: 2.477386e-03	ci left: 7.732926e-01	ci right 7.752121e-01	k: 565205	n:730000
ZFP90   730000 perm   350 sec   (2084 perm/sec)   p_kst 7.742534e-01   p_cons 8.246575e-04   p_joint 3.873973e-03

Joint ci ratio: 7.314517e-02	ci left: 3.724764e-03	ci right 4.008871e-03	k: 2860	n:740000
Cons ci ratio: 1.587809e-01	ci left: 7.576263e-04	ci right 8.895751e-04	k: 608	n:740000
KS ci ratio: 2.460871e-03	ci left: 7.732592e-01	ci right 7.751657e-01	k: 572918	n:740000
ZFP90   740000 perm   358 sec   (2068 perm/sec)   p_kst 7.742135e-01   p_cons 8.216216e-04   p_joint 3.864865e-03

Joint ci ratio: 7.271461e-02	ci left: 3.719607e-03	ci right 4.001580e-03	k: 2894	n:750000
Cons ci ratio: 1.576204e-01	ci left: 7.590496e-04	ci right 8.901887e-04	k: 617	n:750000
KS ci ratio: 2.444551e-03	ci left: 7.732453e-01	ci right 7.751392e-01	k: 580645	n:750000
ZFP90   750000 perm   366 sec   (2051 perm/sec)   p_kst 7.741933e-01   p_cons 8.226667e-04   p_joint 3.858667e-03

Joint ci ratio: 7.261582e-02	ci left: 3.680997e-03	ci right 3.959648e-03	k: 2902	n:760000
Cons ci ratio: 1.563603e-01	ci left: 7.617032e-04	ci right 8.921499e-04	k: 627	n:760000
KS ci ratio: 2.427793e-03	ci left: 7.733413e-01	ci right 7.752224e-01	k: 588455	n:760000
ZFP90   760000 perm   373 sec   (2035 perm/sec)   p_kst 7.742829e-01   p_cons 8.250000e-04   p_joint 3.818421e-03

Joint ci ratio: 6.882904e-02	ci left: 4.050388e-03	ci right 4.340375e-03	k: 3229	n:770000
Cons ci ratio: 1.376622e-01	ci left: 9.795225e-04	ci right 1.125572e-03	k: 809	n:770000
KS ci ratio: 2.411805e-03	ci left: 7.733724e-01	ci right 7.752411e-01	k: 596217	n:770000
ZFP90   770000 perm   381 sec   (2020 perm/sec)   p_kst 7.743078e-01   p_cons 1.050649e-03   p_joint 4.193506e-03

Joint ci ratio: 7.025381e-02	ci left: 3.835936e-03	ci right 4.116486e-03	k: 3100	n:780000
Cons ci ratio: 1.365704e-01	ci left: 9.830596e-04	ci right 1.128379e-03	k: 822	n:780000
KS ci ratio: 2.396111e-03	ci left: 7.734053e-01	ci right 7.752619e-01	k: 603981	n:780000
ZFP90   780000 perm   389 sec   (2005 perm/sec)   p_kst 7.743346e-01   p_cons 1.053846e-03   p_joint 3.974359e-03

Joint ci ratio: 6.977159e-02	ci left: 3.840857e-03	ci right 4.119761e-03	k: 3143	n:790000
Cons ci ratio: 1.355042e-01	ci left: 9.865116e-04	ci right 1.131111e-03	k: 835	n:790000
KS ci ratio: 2.380926e-03	ci left: 7.734069e-01	ci right 7.752518e-01	k: 611721	n:790000
ZFP90   790000 perm   397 sec   (1991 perm/sec)   p_kst 7.743304e-01   p_cons 1.056962e-03   p_joint 3.978481e-03

Joint ci ratio: 6.938665e-02	ci left: 3.835835e-03	ci right 4.112776e-03	k: 3178	n:800000
Cons ci ratio: 1.348607e-01	ci left: 9.838419e-04	ci right 1.127310e-03	k: 843	n:800000
KS ci ratio: 2.365587e-03	ci left: 7.734737e-01	ci right 7.753068e-01	k: 619513	n:800000
ZFP90   800000 perm   405 sec   (1977 perm/sec)   p_kst 7.743912e-01   p_cons 1.053750e-03   p_joint 3.972500e-03

Joint ci ratio: 6.892195e-02	ci left: 3.840648e-03	ci right 4.116005e-03	k: 3221	n:810000
Cons ci ratio: 1.338337e-01	ci left: 9.872058e-04	ci right 1.129981e-03	k: 856	n:810000
KS ci ratio: 2.350872e-03	ci left: 7.734894e-01	ci right 7.753111e-01	k: 627265	n:810000
ZFP90   810000 perm   413 sec   (1963 perm/sec)   p_kst 7.744012e-01   p_cons 1.056790e-03   p_joint 3.976543e-03

Joint ci ratio: 6.875246e-02	ci left: 3.812985e-03	ci right 4.085659e-03	k: 3237	n:820000
Cons ci ratio: 1.332908e-01	ci left: 9.834179e-04	ci right 1.125023e-03	k: 863	n:820000
KS ci ratio: 2.337431e-03	ci left: 7.733545e-01	ci right 7.751655e-01	k: 634894	n:820000
ZFP90   820000 perm   421 sec   (1950 perm/sec)   p_kst 7.742610e-01   p_cons 1.052439e-03   p_joint 3.947561e-03

Joint ci ratio: 6.441433e-02	ci left: 4.299045e-03	ci right 4.586358e-03	k: 3686	n:830000
Cons ci ratio: 1.327543e-01	ci left: 9.797225e-04	ci right 1.120183e-03	k: 870	n:830000
KS ci ratio: 2.323633e-03	ci left: 7.733110e-01	ci right 7.751112e-01	k: 642596	n:830000
ZFP90   830000 perm   429 sec   (1937 perm/sec)   p_kst 7.742120e-01   p_cons 1.048193e-03   p_joint 4.440964e-03

Joint ci ratio: 6.456572e-02	ci left: 4.227950e-03	ci right 4.511199e-03	k: 3669	n:840000
Cons ci ratio: 1.317744e-01	ci left: 9.830233e-04	ci right 1.122835e-03	k: 883	n:840000
KS ci ratio: 2.309863e-03	ci left: 7.733008e-01	ci right 7.750902e-01	k: 650325	n:840000
ZFP90   840000 perm   437 sec   (1924 perm/sec)   p_kst 7.741964e-01   p_cons 1.051190e-03   p_joint 4.367857e-03

Joint ci ratio: 6.413010e-02	ci left: 4.236087e-03	ci right 4.517896e-03	k: 3719	n:850000
Cons ci ratio: 1.312560e-01	ci left: 9.794226e-04	ci right 1.118131e-03	k: 890	n:850000
KS ci ratio: 2.297023e-03	ci left: 7.731859e-01	ci right 7.749651e-01	k: 657965	n:850000
ZFP90   850000 perm   445 sec   (1911 perm/sec)   p_kst 7.740765e-01   p_cons 1.047059e-03   p_joint 4.375294e-03

Joint ci ratio: 6.383085e-02	ci left: 4.226876e-03	ci right 4.506711e-03	k: 3754	n:860000
Cons ci ratio: 1.307437e-01	ci left: 9.759066e-04	ci right 1.113536e-03	k: 897	n:860000
KS ci ratio: 2.283742e-03	ci left: 7.731739e-01	ci right 7.749428e-01	k: 665691	n:860000
ZFP90   860000 perm   453 sec   (1898 perm/sec)   p_kst 7.740593e-01   p_cons 1.043023e-03   p_joint 4.365116e-03

Joint ci ratio: 6.202517e-02	ci left: 4.428332e-03	ci right 4.712914e-03	k: 3975	n:870000
Cons ci ratio: 1.301654e-01	ci left: 9.735845e-04	ci right 1.110232e-03	k: 905	n:870000
KS ci ratio: 2.270650e-03	ci left: 7.731680e-01	ci right 7.749267e-01	k: 673422	n:870000
ZFP90   870000 perm   461 sec   (1885 perm/sec)   p_kst 7.740483e-01   p_cons 1.040230e-03   p_joint 4.568966e-03

Joint ci ratio: 6.170799e-02	ci left: 4.423879e-03	ci right 4.706670e-03	k: 4016	n:880000
Cons ci ratio: 1.295237e-01	ci left: 9.724161e-04	ci right 1.108175e-03	k: 914	n:880000
KS ci ratio: 2.257474e-03	ci left: 7.732100e-01	ci right 7.749586e-01	k: 681195	n:880000
ZFP90   880000 perm   470 sec   (1873 perm/sec)   p_kst 7.740852e-01   p_cons 1.038636e-03   p_joint 4.563636e-03

Joint ci ratio: 6.132735e-02	ci left: 4.429489e-03	ci right 4.710829e-03	k: 4066	n:890000
Cons ci ratio: 1.288915e-01	ci left: 9.712755e-04	ci right 1.106163e-03	k: 923	n:890000
KS ci ratio: 2.244978e-03	ci left: 7.731803e-01	ci right 7.749191e-01	k: 688905	n:890000
ZFP90   890000 perm   478 sec   (1860 perm/sec)   p_kst 7.740506e-01   p_cons 1.037079e-03   p_joint 4.568539e-03

Joint ci ratio: 6.090909e-02	ci left: 4.441545e-03	ci right 4.721659e-03	k: 4122	n:900000
Cons ci ratio: 1.277215e-01	ci left: 9.787664e-04	ci right 1.113367e-03	k: 940	n:900000
KS ci ratio: 2.232560e-03	ci left: 7.731712e-01	ci right 7.749004e-01	k: 696633	n:900000
ZFP90   900000 perm   487 sec   (1848 perm/sec)   p_kst 7.740367e-01   p_cons 1.044444e-03   p_joint 4.580000e-03

Joint ci ratio: 6.059403e-02	ci left: 4.439271e-03	ci right 4.717743e-03	k: 4165	n:910000
Cons ci ratio: 1.268481e-01	ci left: 9.818417e-04	ci right 1.115872e-03	k: 953	n:910000
KS ci ratio: 2.220310e-03	ci left: 7.731679e-01	ci right 7.748875e-01	k: 704366	n:910000
ZFP90   910000 perm   496 sec   (1836 perm/sec)   p_kst 7.740286e-01   p_cons 1.047253e-03   p_joint 4.576923e-03

Joint ci ratio: 6.026223e-02	ci left: 4.440263e-03	ci right 4.717219e-03	k: 4211	n:920000
Cons ci ratio: 1.262540e-01	ci left: 9.806424e-04	ci right 1.113835e-03	k: 962	n:920000
KS ci ratio: 2.208041e-03	ci left: 7.731995e-01	ci right 7.749097e-01	k: 712131	n:920000
ZFP90   920000 perm   505 sec   (1820 perm/sec)   p_kst 7.740554e-01   p_cons 1.045652e-03   p_joint 4.577174e-03

Joint ci ratio: 5.995705e-02	ci left: 4.438059e-03	ci right 4.713427e-03	k: 4254	n:930000
Cons ci ratio: 1.253460e-01	ci left: 9.846780e-04	ci right 1.117386e-03	k: 976	n:930000
KS ci ratio: 2.195811e-03	ci left: 7.732563e-01	ci right 7.749571e-01	k: 719920	n:930000
ZFP90   930000 perm   515 sec   (1806 perm/sec)   p_kst 7.741075e-01   p_cons 1.049462e-03   p_joint 4.574194e-03

Joint ci ratio: 5.997976e-02	ci left: 4.387699e-03	ci right 4.660049e-03	k: 4251	n:940000
Cons ci ratio: 1.248361e-01	ci left: 9.824470e-04	ci right 1.114276e-03	k: 984	n:940000
KS ci ratio: 2.184040e-03	ci left: 7.732703e-01	ci right 7.749620e-01	k: 727670	n:940000
ZFP90   940000 perm   524 sec   (1793 perm/sec)   p_kst 7.741170e-01   p_cons 1.046809e-03   p_joint 4.522340e-03

Joint ci ratio: 5.954667e-02	ci left: 4.405802e-03	ci right 4.677233e-03	k: 4313	n:950000
Cons ci ratio: 1.240824e-01	ci left: 9.843438e-04	ci right 1.115571e-03	k: 996	n:950000
KS ci ratio: 2.172398e-03	ci left: 7.732936e-01	ci right 7.749763e-01	k: 735429	n:950000
ZFP90   950000 perm   533 sec   (1781 perm/sec)   p_kst 7.741358e-01   p_cons 1.048421e-03   p_joint 4.540000e-03

Joint ci ratio: 5.968024e-02	ci left: 4.340407e-03	ci right 4.608430e-03	k: 4294	n:960000
Cons ci ratio: 1.235262e-01	ci left: 9.831748e-04	ci right 1.113616e-03	k: 1005	n:960000
KS ci ratio: 2.160818e-03	ci left: 7.733362e-01	ci right 7.750101e-01	k: 743207	n:960000
ZFP90   960000 perm   543 sec   (1768 perm/sec)   p_kst 7.741740e-01   p_cons 1.046875e-03   p_joint 4.472917e-03

Joint ci ratio: 5.931514e-02	ci left: 4.349488e-03	ci right 4.616371e-03	k: 4347	n:970000
Cons ci ratio: 1.230381e-01	ci left: 9.810320e-04	ci right 1.110637e-03	k: 1013	n:970000
KS ci ratio: 2.149738e-03	ci left: 7.733264e-01	ci right 7.749916e-01	k: 750935	n:970000
ZFP90   970000 perm   552 sec   (1756 perm/sec)   p_kst 7.741598e-01   p_cons 1.044330e-03   p_joint 4.481443e-03

Joint ci ratio: 6.076532e-02	ci left: 4.100050e-03	ci right 4.357995e-03	k: 4143	n:980000
Cons ci ratio: 1.225558e-01	ci left: 9.789339e-04	ci right 1.107718e-03	k: 1021	n:980000
KS ci ratio: 2.138596e-03	ci left: 7.733545e-01	ci right 7.750112e-01	k: 758700	n:980000
ZFP90   980000 perm   561 sec   (1745 perm/sec)   p_kst 7.741837e-01   p_cons 1.041837e-03   p_joint 4.227551e-03

Joint ci ratio: 6.121324e-02	ci left: 3.998948e-03	ci right 4.252452e-03	k: 4083	n:990000
Cons ci ratio: 1.220198e-01	ci left: 9.778585e-04	ci right 1.105898e-03	k: 1030	n:990000
KS ci ratio: 2.127828e-03	ci left: 7.733488e-01	ci right 7.749971e-01	k: 766432	n:990000
ZFP90   990000 perm   571 sec   (1735 perm/sec)   p_kst 7.741737e-01   p_cons 1.040404e-03   p_joint 4.124242e-03

Joint ci ratio: 5.831727e-02	ci left: 4.366798e-03	ci right 4.630085e-03	k: 4497	n:1000000
Cons ci ratio: 1.212575e-01	ci left: 9.806845e-04	ci right 1.108234e-03	k: 1043	n:1000000
KS ci ratio: 2.117687e-03	ci left: 7.732661e-01	ci right 7.749063e-01	k: 774087	n:1000000
ZFP90   1000000 perm   580 sec   (1723 perm/sec)   p_kst 7.740870e-01   p_cons 1.043000e-03   p_joint 4.497000e-03

Joint ci ratio: 5.861382e-02	ci left: 4.279654e-03	ci right 4.539043e-03	k: 4452	n:1010000
Cons ci ratio: 1.205665e-01	ci left: 9.824966e-04	ci right 1.109502e-03	k: 1055	n:1010000
KS ci ratio: 2.107236e-03	ci left: 7.732604e-01	ci right 7.748925e-01	k: 781818	n:1010000
ZFP90   1010000 perm   590 sec   (1713 perm/sec)   p_kst 7.740772e-01   p_cons 1.044554e-03   p_joint 4.407921e-03

Joint ci ratio: 5.828732e-02	ci left: 4.286000e-03	ci right 4.544278e-03	k: 4502	n:1020000
Cons ci ratio: 1.197190e-01	ci left: 9.871284e-04	ci right 1.113772e-03	k: 1070	n:1020000
KS ci ratio: 2.096715e-03	ci left: 7.732921e-01	ci right 7.749161e-01	k: 789587	n:1020000
ZFP90   1020000 perm   599 sec   (1702 perm/sec)   p_kst 7.741049e-01   p_cons 1.049020e-03   p_joint 4.413725e-03

Joint ci ratio: 5.930237e-02	ci left: 4.098973e-03	ci right 4.350429e-03	k: 4350	n:1030000
Cons ci ratio: 1.191088e-01	ci left: 9.879052e-04	ci right 1.113957e-03	k: 1081	n:1030000
KS ci ratio: 2.086744e-03	ci left: 7.732571e-01	ci right 7.748734e-01	k: 797288	n:1030000
ZFP90   1030000 perm   609 sec   (1693 perm/sec)   p_kst 7.740660e-01   p_cons 1.049515e-03   p_joint 4.223301e-03

Joint ci ratio: 5.897778e-02	ci left: 4.105032e-03	ci right 4.355434e-03	k: 4398	n:1040000
Cons ci ratio: 1.187802e-01	ci left: 9.840036e-04	ci right 1.109187e-03	k: 1087	n:1040000
KS ci ratio: 2.076486e-03	ci left: 7.732951e-01	ci right 7.749034e-01	k: 805064	n:1040000
ZFP90   1040000 perm   618 sec   (1682 perm/sec)   p_kst 7.741000e-01   p_cons 1.045192e-03   p_joint 4.228846e-03

Joint ci ratio: 5.883811e-02	ci left: 4.085640e-03	ci right 4.334250e-03	k: 4419	n:1050000
Cons ci ratio: 1.185628e-01	ci left: 9.783284e-04	ci right 1.102546e-03	k: 1091	n:1050000
KS ci ratio: 2.066704e-03	ci left: 7.732770e-01	ci right 7.748777e-01	k: 812782	n:1050000
ZFP90   1050000 perm   628 sec   (1672 perm/sec)   p_kst 7.740781e-01   p_cons 1.039048e-03   p_joint 4.208571e-03

Joint ci ratio: 5.884597e-02	ci left: 4.046165e-03	ci right 4.292406e-03	k: 4418	n:1060000
Cons ci ratio: 1.178632e-01	ci left: 9.810005e-04	ci right 1.104771e-03	k: 1104	n:1060000
KS ci ratio: 2.057308e-03	ci left: 7.732168e-01	ci right 7.748101e-01	k: 820455	n:1060000
ZFP90   1060000 perm   638 sec   (1662 perm/sec)   p_kst 7.740142e-01   p_cons 1.041509e-03   p_joint 4.167925e-03

Joint ci ratio: 5.857488e-02	ci left: 4.046105e-03	ci right 4.291170e-03	k: 4459	n:1070000
Cons ci ratio: 1.173862e-01	ci left: 9.799960e-04	ci right 1.103104e-03	k: 1113	n:1070000
KS ci ratio: 2.047541e-03	ci left: 7.732428e-01	ci right 7.748286e-01	k: 828219	n:1070000
ZFP90   1070000 perm   647 sec   (1653 perm/sec)   p_kst 7.740364e-01   p_cons 1.040187e-03   p_joint 4.167290e-03

Joint ci ratio: 5.870171e-02	ci left: 3.991304e-03	ci right 4.233590e-03	k: 4440	n:1080000
Cons ci ratio: 1.169671e-01	ci left: 9.781122e-04	ci right 1.100515e-03	k: 1121	n:1080000
KS ci ratio: 2.038161e-03	ci left: 7.732258e-01	ci right 7.748042e-01	k: 835937	n:1080000
ZFP90   1080000 perm   657 sec   (1644 perm/sec)   p_kst 7.740157e-01   p_cons 1.037963e-03   p_joint 4.111111e-03

Joint ci ratio: 5.847191e-02	ci left: 3.986325e-03	ci right 4.227331e-03	k: 4475	n:1090000
Cons ci ratio: 1.163979e-01	ci left: 9.789359e-04	ci right 1.100805e-03	k: 1132	n:1090000
KS ci ratio: 2.028849e-03	ci left: 7.732192e-01	ci right 7.747904e-01	k: 843666	n:1090000
ZFP90   1090000 perm   667 sec   (1634 perm/sec)   p_kst 7.740055e-01   p_cons 1.038532e-03   p_joint 4.105505e-03

Joint ci ratio: 5.911292e-02	ci left: 3.864089e-03	ci right 4.100353e-03	k: 4379	n:1100000
Cons ci ratio: 1.157357e-01	ci left: 9.815116e-04	ci right 1.102958e-03	k: 1145	n:1100000
KS ci ratio: 2.019459e-03	ci left: 7.732482e-01	ci right 7.748122e-01	k: 851434	n:1100000
ZFP90   1100000 perm   678 sec   (1623 perm/sec)   p_kst 7.740309e-01   p_cons 1.040909e-03   p_joint 3.980909e-03

Joint ci ratio: 5.883147e-02	ci left: 3.866558e-03	ci right 4.101808e-03	k: 4421	n:1110000
Cons ci ratio: 1.151344e-01	ci left: 9.831679e-04	ci right 1.104145e-03	k: 1157	n:1110000
KS ci ratio: 2.010168e-03	ci left: 7.732821e-01	ci right 7.748390e-01	k: 859208	n:1110000
ZFP90   1110000 perm   688 sec   (1614 perm/sec)   p_kst 7.740613e-01   p_cons 1.042342e-03   p_joint 3.982883e-03

Joint ci ratio: 5.861996e-02	ci left: 3.860186e-03	ci right 4.094176e-03	k: 4453	n:1120000
Cons ci ratio: 1.145423e-01	ci left: 9.847962e-04	ci right 1.105308e-03	k: 1169	n:1120000
KS ci ratio: 2.001458e-03	ci left: 7.732359e-01	ci right 7.747859e-01	k: 866893	n:1120000
ZFP90   1120000 perm   698 sec   (1605 perm/sec)   p_kst 7.740116e-01   p_cons 1.043750e-03   p_joint 3.975893e-03

Joint ci ratio: 5.836501e-02	ci left: 3.860034e-03	ci right 4.092962e-03	k: 4492	n:1130000
Cons ci ratio: 1.141528e-01	ci left: 9.829583e-04	ci right 1.102809e-03	k: 1177	n:1130000
KS ci ratio: 1.992623e-03	ci left: 7.732321e-01	ci right 7.747753e-01	k: 874625	n:1130000
ZFP90   1130000 perm   709 sec   (1595 perm/sec)   p_kst 7.740044e-01   p_cons 1.041593e-03   p_joint 3.975221e-03

Joint ci ratio: 5.808762e-02	ci left: 3.863344e-03	ci right 4.095327e-03	k: 4535	n:1140000
Cons ci ratio: 1.136714e-01	ci left: 9.828578e-04	ci right 1.102157e-03	k: 1187	n:1140000
KS ci ratio: 1.983944e-03	ci left: 7.732215e-01	ci right 7.747579e-01	k: 882349	n:1140000
ZFP90   1140000 perm   719 sec   (1585 perm/sec)   p_kst 7.739904e-01   p_cons 1.041228e-03   p_joint 3.978070e-03

Joint ci ratio: 5.836051e-02	ci left: 3.793756e-03	ci right 4.022667e-03	k: 4493	n:1150000
Cons ci ratio: 1.130073e-01	ci left: 9.861401e-04	ci right 1.105091e-03	k: 1201	n:1150000
KS ci ratio: 1.975043e-03	ci left: 7.732702e-01	ci right 7.747998e-01	k: 890141	n:1150000
ZFP90   1150000 perm   730 sec   (1575 perm/sec)   p_kst 7.740357e-01   p_cons 1.044348e-03   p_joint 3.906957e-03

Joint ci ratio: 5.623418e-02	ci left: 4.054220e-03	ci right 4.289645e-03	k: 4838	n:1160000
Cons ci ratio: 1.125402e-01	ci left: 9.860165e-04	ci right 1.104429e-03	k: 1211	n:1160000
KS ci ratio: 1.966426e-03	ci left: 7.732887e-01	ci right 7.748117e-01	k: 897899	n:1160000
ZFP90   1160000 perm   741 sec   (1566 perm/sec)   p_kst 7.740509e-01   p_cons 1.043966e-03   p_joint 4.170690e-03

Joint ci ratio: 5.598595e-02	ci left: 4.055805e-03	ci right 4.290249e-03	k: 4881	n:1170000
Cons ci ratio: 1.122167e-01	ci left: 9.834036e-04	ci right 1.101140e-03	k: 1218	n:1170000
KS ci ratio: 1.958103e-03	ci left: 7.732744e-01	ci right 7.747909e-01	k: 905619	n:1170000
ZFP90   1170000 perm   752 sec   (1557 perm/sec)   p_kst 7.740333e-01   p_cons 1.041026e-03   p_joint 4.171795e-03

Joint ci ratio: 5.587214e-02	ci left: 4.038145e-03	ci right 4.271079e-03	k: 4901	n:1180000
Cons ci ratio: 1.116684e-01	ci left: 9.849545e-04	ci right 1.102262e-03	k: 1230	n:1180000
KS ci ratio: 1.949752e-03	ci left: 7.732842e-01	ci right 7.747942e-01	k: 913367	n:1180000
ZFP90   1180000 perm   763 sec   (1547 perm/sec)   p_kst 7.740398e-01   p_cons 1.042373e-03   p_joint 4.153390e-03

Joint ci ratio: 5.627803e-02	ci left: 3.946207e-03	ci right 4.175545e-03	k: 4831	n:1190000
Cons ci ratio: 1.111727e-01	ci left: 9.856637e-04	ci right 1.102501e-03	k: 1241	n:1190000
KS ci ratio: 1.941456e-03	ci left: 7.733030e-01	ci right 7.748066e-01	k: 921126	n:1190000
ZFP90   1190000 perm   774 sec   (1538 perm/sec)   p_kst 7.740555e-01   p_cons 1.042857e-03   p_joint 4.059664e-03

Joint ci ratio: 5.616822e-02	ci left: 3.928932e-03	ci right 4.156805e-03	k: 4850	n:1200000
Cons ci ratio: 1.105513e-01	ci left: 9.887931e-04	ci right 1.105303e-03	k: 1255	n:1200000
KS ci ratio: 1.933499e-03	ci left: 7.732790e-01	ci right 7.747764e-01	k: 928834	n:1200000
ZFP90   1200000 perm   785 sec   (1529 perm/sec)   p_kst 7.740283e-01   p_cons 1.045833e-03   p_joint 4.041667e-03

Joint ci ratio: 5.585787e-02	ci left: 3.940465e-03	ci right 4.167704e-03	k: 4904	n:1210000
Cons ci ratio: 1.100703e-01	ci left: 9.894613e-04	ci right 1.105510e-03	k: 1266	n:1210000
KS ci ratio: 1.925817e-03	ci left: 7.732231e-01	ci right 7.747144e-01	k: 936503	n:1210000
ZFP90   1210000 perm   796 sec   (1520 perm/sec)   p_kst 7.739694e-01   p_cons 1.046281e-03   p_joint 4.052893e-03

Joint ci ratio: 5.560329e-02	ci left: 3.944538e-03	ci right 4.170941e-03	k: 4949	n:1220000
Cons ci ratio: 1.095526e-01	ci left: 9.909169e-04	ci right 1.106555e-03	k: 1278	n:1220000
KS ci ratio: 1.917588e-03	ci left: 7.732847e-01	ci right 7.747697e-01	k: 944314	n:1220000
ZFP90   1220000 perm   807 sec   (1511 perm/sec)   p_kst 7.740279e-01   p_cons 1.047541e-03   p_joint 4.056557e-03

Joint ci ratio: 5.550297e-02	ci left: 3.926898e-03	ci right 4.151870e-03	k: 4967	n:1230000
Cons ci ratio: 1.090845e-01	ci left: 9.915593e-04	ci right 1.106746e-03	k: 1289	n:1230000
KS ci ratio: 1.909761e-03	ci left: 7.732907e-01	ci right 7.747697e-01	k: 952058	n:1230000
ZFP90   1230000 perm   818 sec   (1503 perm/sec)   p_kst 7.740309e-01   p_cons 1.047967e-03   p_joint 4.038211e-03

Joint ci ratio: 5.530306e-02	ci left: 3.923860e-03	ci right 4.147821e-03	k: 5003	n:1240000
Cons ci ratio: 1.085806e-01	ci left: 9.929769e-04	ci right 1.107761e-03	k: 1301	n:1240000
KS ci ratio: 1.902033e-03	ci left: 7.732959e-01	ci right 7.747689e-01	k: 959801	n:1240000
ZFP90   1240000 perm   830 sec   (1494 perm/sec)   p_kst 7.740331e-01   p_cons 1.049194e-03   p_joint 4.034677e-03

Joint ci ratio: 5.582724e-02	ci left: 3.819097e-03	ci right 4.039212e-03	k: 4910	n:1250000
Cons ci ratio: 1.079193e-01	ci left: 9.974866e-04	ci right 1.112045e-03	k: 1317	n:1250000
KS ci ratio: 1.894636e-03	ci left: 7.732570e-01	ci right 7.747242e-01	k: 967489	n:1250000
ZFP90   1250000 perm   841 sec   (1486 perm/sec)   p_kst 7.739912e-01   p_cons 1.053600e-03   p_joint 3.928000e-03

Joint ci ratio: 5.558434e-02	ci left: 3.822438e-03	ci right 4.041756e-03	k: 4953	n:1260000
Cons ci ratio: 1.074313e-01	ci left: 9.988374e-04	ci right 1.113000e-03	k: 1329	n:1260000
KS ci ratio: 1.887102e-03	ci left: 7.732600e-01	ci right 7.747213e-01	k: 975229	n:1260000
ZFP90   1260000 perm   853 sec   (1477 perm/sec)   p_kst 7.739913e-01   p_cons 1.054762e-03   p_joint 3.930952e-03

Joint ci ratio: 5.548970e-02	ci left: 3.805539e-03	ci right 4.023504e-03	k: 4970	n:1270000
Cons ci ratio: 1.069100e-01	ci left: 1.000934e-03	ci right 1.114746e-03	k: 1342	n:1270000
KS ci ratio: 1.879704e-03	ci left: 7.732542e-01	ci right 7.747099e-01	k: 982958	n:1270000
ZFP90   1270000 perm   864 sec   (1469 perm/sec)   p_kst 7.739827e-01   p_cons 1.056693e-03   p_joint 3.913386e-03

Joint ci ratio: 5.540670e-02	ci left: 3.787364e-03	ci right 4.003953e-03	k: 4985	n:1280000
Cons ci ratio: 1.066721e-01	ci left: 9.976769e-04	ci right 1.110850e-03	k: 1348	n:1280000
KS ci ratio: 1.872338e-03	ci left: 7.732588e-01	ci right 7.747087e-01	k: 990700	n:1280000
ZFP90   1280000 perm   876 sec   (1461 perm/sec)   p_kst 7.739844e-01   p_cons 1.053125e-03   p_joint 3.894531e-03

Joint ci ratio: 5.519127e-02	ci left: 3.787819e-03	ci right 4.003565e-03	k: 5024	n:1290000
Cons ci ratio: 1.060449e-01	ci left: 1.002016e-03	ci right 1.114972e-03	k: 1364	n:1290000
KS ci ratio: 1.865136e-03	ci left: 7.732485e-01	ci right 7.746929e-01	k: 998423	n:1290000
ZFP90   1290000 perm   888 sec   (1453 perm/sec)   p_kst 7.739713e-01   p_cons 1.057364e-03   p_joint 3.894574e-03

Joint ci ratio: 5.498378e-02	ci left: 3.787510e-03	ci right 4.002402e-03	k: 5062	n:1300000
Cons ci ratio: 1.055051e-01	ci left: 1.004793e-03	ci right 1.117449e-03	k: 1378	n:1300000
KS ci ratio: 1.858099e-03	ci left: 7.732231e-01	ci right 7.746619e-01	k: 1006126	n:1300000
ZFP90   1300000 perm   900 sec   (1445 perm/sec)   p_kst 7.739431e-01   p_cons 1.060000e-03   p_joint 3.893846e-03

Joint ci ratio: 5.294958e-02	ci left: 4.056072e-03	ci right 4.277427e-03	k: 5457	n:1310000
Cons ci ratio: 1.051246e-01	ci left: 1.004555e-03	ci right 1.116753e-03	k: 1388	n:1310000
KS ci ratio: 1.850995e-03	ci left: 7.732255e-01	ci right 7.746588e-01	k: 1013865	n:1310000
ZFP90   1310000 perm   911 sec   (1437 perm/sec)   p_kst 7.739427e-01   p_cons 1.059542e-03   p_joint 4.165649e-03

Joint ci ratio: 5.277593e-02	ci left: 4.052256e-03	ci right 4.272656e-03	k: 5493	n:1320000
Cons ci ratio: 1.046734e-01	ci left: 1.005797e-03	ci right 1.117623e-03	k: 1400	n:1320000
KS ci ratio: 1.843960e-03	ci left: 7.732302e-01	ci right 7.746580e-01	k: 1021607	n:1320000
ZFP90   1320000 perm   924 sec   (1429 perm/sec)   p_kst 7.739447e-01   p_cons 1.060606e-03   p_joint 4.161364e-03

Joint ci ratio: 5.259443e-02	ci left: 4.049983e-03	ci right 4.269478e-03	k: 5531	n:1330000
Cons ci ratio: 1.042648e-01	ci left: 1.006290e-03	ci right 1.117706e-03	k: 1411	n:1330000
KS ci ratio: 1.837202e-03	ci left: 7.731972e-01	ci right 7.746197e-01	k: 1029299	n:1330000
ZFP90   1330000 perm   936 sec   (1421 perm/sec)   p_kst 7.739090e-01   p_cons 1.060902e-03   p_joint 4.158647e-03

Joint ci ratio: 5.251429e-02	ci left: 4.032278e-03	ci right 4.250471e-03	k: 5548	n:1340000
Cons ci ratio: 1.038976e-01	ci left: 1.006048e-03	ci right 1.117022e-03	k: 1421	n:1340000
KS ci ratio: 1.830014e-03	ci left: 7.732610e-01	ci right 7.746781e-01	k: 1037120	n:1340000
ZFP90   1340000 perm   948 sec   (1414 perm/sec)   p_kst 7.739701e-01   p_cons 1.060448e-03   p_joint 4.140299e-03

Joint ci ratio: 5.250559e-02	ci left: 4.003870e-03	ci right 4.220488e-03	k: 5550	n:1350000
Cons ci ratio: 1.033898e-01	ci left: 1.008698e-03	ci right 1.119387e-03	k: 1435	n:1350000
KS ci ratio: 1.823053e-03	ci left: 7.732965e-01	ci right 7.747083e-01	k: 1044904	n:1350000
ZFP90   1350000 perm   961 sec   (1405 perm/sec)   p_kst 7.740030e-01   p_cons 1.062963e-03   p_joint 4.111111e-03

Joint ci ratio: 5.239279e-02	ci left: 3.991844e-03	ci right 4.207335e-03	k: 5574	n:1360000
Cons ci ratio: 1.029604e-01	ci left: 1.009877e-03	ci right 1.120207e-03	k: 1447	n:1360000
KS ci ratio: 1.816186e-03	ci left: 7.733285e-01	ci right 7.747350e-01	k: 1052684	n:1360000
ZFP90   1360000 perm   973 sec   (1398 perm/sec)   p_kst 7.740324e-01   p_cons 1.063971e-03   p_joint 4.098529e-03

Joint ci ratio: 5.281858e-02	ci left: 3.898593e-03	ci right 4.110812e-03	k: 5485	n:1370000
Cons ci ratio: 1.025715e-01	ci left: 1.010328e-03	ci right 1.120266e-03	k: 1458	n:1370000
KS ci ratio: 1.809410e-03	ci left: 7.733572e-01	ci right 7.747585e-01	k: 1060460	n:1370000
ZFP90   1370000 perm   985 sec   (1390 perm/sec)   p_kst 7.740584e-01   p_cons 1.064234e-03   p_joint 4.003650e-03

Joint ci ratio: 5.270853e-02	ci left: 3.886789e-03	ci right 4.097910e-03	k: 5508	n:1380000
Cons ci ratio: 1.021870e-01	ci left: 1.010774e-03	ci right 1.120323e-03	k: 1469	n:1380000
KS ci ratio: 1.802800e-03	ci left: 7.733680e-01	ci right 7.747642e-01	k: 1068212	n:1380000
ZFP90   1380000 perm   998 sec   (1383 perm/sec)   p_kst 7.740667e-01   p_cons 1.064493e-03   p_joint 3.991304e-03

Joint ci ratio: 5.255626e-02	ci left: 3.881544e-03	ci right 4.091754e-03	k: 5540	n:1390000
Cons ci ratio: 1.019102e-01	ci left: 1.009111e-03	ci right 1.118165e-03	k: 1477	n:1390000
KS ci ratio: 1.796343e-03	ci left: 7.733628e-01	ci right 7.747540e-01	k: 1075942	n:1390000
ZFP90   1390000 perm   1011 sec   (1375 perm/sec)   p_kst 7.740590e-01   p_cons 1.062590e-03   p_joint 3.985612e-03

Joint ci ratio: 5.235816e-02	ci left: 3.883426e-03	ci right 4.092920e-03	k: 5582	n:1400000
Cons ci ratio: 1.015672e-01	ci left: 1.008864e-03	ci right 1.117503e-03	k: 1487	n:1400000
KS ci ratio: 1.789859e-03	ci left: 7.733764e-01	ci right 7.747625e-01	k: 1083698	n:1400000
ZFP90   1400000 perm   1024 sec   (1368 perm/sec)   p_kst 7.740700e-01   p_cons 1.062143e-03   p_joint 3.987143e-03

Joint ci ratio: 5.216694e-02	ci left: 3.884582e-03	ci right 4.093350e-03	k: 5623	n:1410000
Cons ci ratio: 1.011601e-01	ci left: 1.010004e-03	ci right 1.118304e-03	k: 1499	n:1410000
KS ci ratio: 1.783388e-03	ci left: 7.734010e-01	ci right 7.747822e-01	k: 1091470	n:1410000
ZFP90   1410000 perm   1036 sec   (1361 perm/sec)   p_kst 7.740922e-01   p_cons 1.063121e-03   p_joint 3.987943e-03

Joint ci ratio: 5.202854e-02	ci left: 3.878077e-03	ci right 4.085926e-03	k: 5653	n:1420000
Cons ci ratio: 1.008580e-01	ci left: 1.009069e-03	ci right 1.116926e-03	k: 1508	n:1420000
KS ci ratio: 1.777276e-03	ci left: 7.733683e-01	ci right 7.747447e-01	k: 1099161	n:1420000
ZFP90   1420000 perm   1049 sec   (1354 perm/sec)   p_kst 7.740570e-01   p_cons 1.061972e-03   p_joint 3.980986e-03

Joint ci ratio: 5.202927e-02	ci left: 3.850956e-03	ci right 4.057355e-03	k: 5653	n:1430000
Cons ci ratio: 1.004263e-01	ci left: 1.010875e-03	ci right 1.118435e-03	k: 1521	n:1430000
KS ci ratio: 1.770996e-03	ci left: 7.733815e-01	ci right 7.747530e-01	k: 1106917	n:1430000
ZFP90   1430000 perm   1062 sec   (1347 perm/sec)   p_kst 7.740678e-01   p_cons 1.063636e-03   p_joint 3.953147e-03

Joint ci ratio: 5.207624e-02	ci left: 3.817357e-03	ci right 4.022146e-03	k: 5643	n:1440000
Cons ci ratio: 1.001963e-01	ci left: 1.008594e-03	ci right 1.115652e-03	k: 1528	n:1440000
KS ci ratio: 1.764824e-03	ci left: 7.733862e-01	ci right 7.747530e-01	k: 1114661	n:1440000
ZFP90   1440000 perm   1075 sec   (1339 perm/sec)   p_kst 7.740701e-01   p_cons 1.061111e-03   p_joint 3.918750e-03

Joint ci ratio: 5.194775e-02	ci left: 3.810090e-03	ci right 4.013969e-03	k: 5671	n:1450000
Cons ci ratio: 9.993525e-02	ci left: 1.007017e-03	ci right 1.113613e-03	k: 1536	n:1450000
KS ci ratio: 1.758568e-03	ci left: 7.734205e-01	ci right 7.747825e-01	k: 1122448	n:1450000
ZFP90   1450000 perm   1088 sec   (1332 perm/sec)   p_kst 7.741021e-01   p_cons 1.059310e-03   p_joint 3.911034e-03

Outputting figure to mutsig2_images.part000000000194/ZFP90.7_1927_1450000_0.7741_0.0010593_0.003911.png
                gene_name: ZFP90
               theta_stop: 0.100 
                    nperm: 1450000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.0011 
      ci_cons_bounds_left: 0.0010 
     ci_cons_bounds_right: 0.0011 
                  p_joint: 0.0039 
     ci_joint_bounds_left: 0.0038 
    ci_joint_bounds_right: 0.0040 

Current progress: 31 percent done.
ZIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.590609e-02	ci left: 3.202883e-01	ci right 3.388111e-01	k: 3295	n:10000
Cons ci ratio: 7.021762e-02	ci left: 2.291867e-01	ci right 2.459664e-01	k: 2375	n:10000
KS ci ratio: 5.120650e-02	ci left: 3.599296e-01	ci right 3.789466e-01	k: 3694	n:10000
ZIM2   10000 perm   2 sec   (5743 perm/sec)   p_kst 3.694000e-01   p_cons 2.375000e-01   p_joint 3.295000e-01

Outputting figure to mutsig2_images.part000000000194/ZIM2.7_1620_10000_0.3694_0.2375_0.3295.png
                gene_name: ZIM2
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 33 percent done.
ZFAT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.578324e-02	ci left: 6.888946e-01	ci right 7.069900e-01	k: 6980	n:10000
Cons ci ratio: 4.702498e-02	ci left: 4.002380e-01	ci right 4.196145e-01	k: 4099	n:10000
KS ci ratio: 2.356124e-02	ci left: 7.258284e-01	ci right 7.432348e-01	k: 7346	n:10000
ZFAT   10000 perm   2 sec   (4852 perm/sec)   p_kst 7.346000e-01   p_cons 4.099000e-01   p_joint 6.980000e-01

Outputting figure to mutsig2_images.part000000000194/ZFAT.6_3796_10000_0.7346_0.4099_0.698.png
                gene_name: ZFAT
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 34 percent done.
ZFPM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.842359e-01	ci left: 8.324320e-03	ci right 1.236857e-02	k: 102	n:10000
Cons ci ratio: 6.310950e-02	ci left: 2.695318e-01	ci right 2.871975e-01	k: 2783	n:10000
KS ci ratio: 1.599773e+00	ci left: 1.623679e-04	ci right 1.166444e-03	k: 5	n:10000
ZFPM2   10000 perm   2 sec   (4785 perm/sec)   p_kst 5.000000e-04   p_cons 2.783000e-01   p_joint 1.020000e-02

Joint ci ratio: 4.169427e-01	ci left: 3.485595e-03	ci right 5.362982e-03	k: 87	n:20000
Cons ci ratio: 4.538721e-02	ci left: 2.654443e-01	ci right 2.778222e-01	k: 5432	n:20000
KS ci ratio: 1.385617e+00	ci left: 1.407294e-04	ci right 7.210000e-04	k: 7	n:20000
ZFPM2   20000 perm   5 sec   (4342 perm/sec)   p_kst 3.500000e-04   p_cons 2.716000e-01   p_joint 4.350000e-03

Joint ci ratio: 3.680613e-01	ci left: 3.074978e-03	ci right 4.490465e-03	k: 112	n:30000
Cons ci ratio: 3.714775e-02	ci left: 2.656447e-01	ci right 2.757331e-01	k: 8120	n:30000
KS ci ratio: 1.131361e+00	ci left: 1.830524e-04	ci right 6.559730e-04	k: 11	n:30000
ZFPM2   30000 perm   7 sec   (4172 perm/sec)   p_kst 3.666667e-04   p_cons 2.706667e-01   p_joint 3.733333e-03

Joint ci ratio: 3.419265e-01	ci left: 2.716059e-03	ci right 3.857935e-03	k: 130	n:40000
Cons ci ratio: 3.213024e-02	ci left: 2.668226e-01	ci right 2.755607e-01	k: 10847	n:40000
KS ci ratio: 9.797917e-01	ci left: 2.098994e-04	ci right 6.184302e-04	k: 15	n:40000
ZFPM2   40000 perm   10 sec   (4031 perm/sec)   p_kst 3.750000e-04   p_cons 2.711750e-01   p_joint 3.250000e-03

Joint ci ratio: 3.515861e-01	ci left: 2.044905e-03	ci right 2.934431e-03	k: 123	n:50000
Cons ci ratio: 2.873237e-02	ci left: 2.673663e-01	ci right 2.751803e-01	k: 13563	n:50000
KS ci ratio: 8.763546e-01	ci left: 2.287998e-04	ci right 5.933537e-04	k: 19	n:50000
ZFPM2   50000 perm   13 sec   (3930 perm/sec)   p_kst 3.800000e-04   p_cons 2.712600e-01   p_joint 2.460000e-03

Joint ci ratio: 3.447627e-01	ci left: 1.780089e-03	ci right 2.536029e-03	k: 128	n:60000
Cons ci ratio: 2.616036e-02	ci left: 2.687409e-01	ci right 2.758811e-01	k: 16338	n:60000
KS ci ratio: 7.542283e-01	ci left: 2.830866e-04	ci right 6.348697e-04	k: 26	n:60000
ZFPM2   60000 perm   16 sec   (3860 perm/sec)   p_kst 4.333333e-04   p_cons 2.723000e-01   p_joint 2.133333e-03

Joint ci ratio: 4.554466e-01	ci left: 8.175199e-04	ci right 1.311060e-03	k: 73	n:70000
Cons ci ratio: 2.428646e-02	ci left: 2.679232e-01	ci right 2.745243e-01	k: 18985	n:70000
KS ci ratio: 7.838544e-01	ci left: 2.196870e-04	ci right 5.101016e-04	k: 24	n:70000
ZFPM2   70000 perm   18 sec   (3803 perm/sec)   p_kst 3.428571e-04   p_cons 2.712143e-01   p_joint 1.042857e-03

Joint ci ratio: 4.300500e-01	ci left: 8.152934e-04	ci right 1.272138e-03	k: 82	n:80000
Cons ci ratio: 2.266865e-02	ci left: 2.689932e-01	ci right 2.751733e-01	k: 21766	n:80000
KS ci ratio: 6.928217e-01	ci left: 2.633022e-04	ci right 5.499806e-04	k: 31	n:80000
ZFPM2   80000 perm   21 sec   (3750 perm/sec)   p_kst 3.875000e-04   p_cons 2.720750e-01   p_joint 1.025000e-03

Joint ci ratio: 4.129953e-01	ci left: 7.942319e-04	ci right 1.216774e-03	k: 89	n:90000
Cons ci ratio: 2.135656e-02	ci left: 2.694600e-01	ci right 2.752880e-01	k: 24513	n:90000
KS ci ratio: 6.531990e-01	ci left: 2.708898e-04	ci right 5.408092e-04	k: 35	n:90000
ZFPM2   90000 perm   24 sec   (3699 perm/sec)   p_kst 3.888889e-04   p_cons 2.723667e-01   p_joint 9.888889e-04

Joint ci ratio: 4.250008e-01	ci left: 6.700705e-04	ci right 1.039873e-03	k: 84	n:100000
Cons ci ratio: 2.022988e-02	ci left: 2.702105e-01	ci right 2.757427e-01	k: 27297	n:100000
KS ci ratio: 6.275768e-01	ci left: 2.689242e-04	ci right 5.215428e-04	k: 38	n:100000
ZFPM2   100000 perm   28 sec   (3630 perm/sec)   p_kst 3.800000e-04   p_cons 2.729700e-01   p_joint 8.400000e-04

Joint ci ratio: 4.381079e-01	ci left: 5.686313e-04	ci right 8.949897e-04	k: 79	n:110000
Cons ci ratio: 1.930957e-02	ci left: 2.699065e-01	ci right 2.751782e-01	k: 29979	n:110000
KS ci ratio: 5.976748e-01	ci left: 2.751944e-04	ci right 5.160726e-04	k: 42	n:110000
ZFPM2   110000 perm   31 sec   (3570 perm/sec)   p_kst 3.818182e-04   p_cons 2.725364e-01   p_joint 7.181818e-04

Joint ci ratio: 2.365444e-01	ci left: 2.013367e-03	ci right 2.561130e-03	k: 273	n:120000
Cons ci ratio: 1.801827e-02	ci left: 2.803029e-01	ci right 2.854076e-01	k: 33942	n:120000
KS ci ratio: 5.842471e-01	ci left: 2.664328e-04	ci right 4.922020e-04	k: 44	n:120000
ZFPM2   120000 perm   35 sec   (3477 perm/sec)   p_kst 3.666667e-04   p_cons 2.828500e-01   p_joint 2.275000e-03

Joint ci ratio: 2.335938e-01	ci left: 1.909155e-03	ci right 2.421150e-03	k: 280	n:130000
Cons ci ratio: 1.732012e-02	ci left: 2.801994e-01	ci right 2.851026e-01	k: 36744	n:130000
KS ci ratio: 5.542630e-01	ci left: 2.788624e-04	ci right 4.982821e-04	k: 49	n:130000
ZFPM2   130000 perm   38 sec   (3438 perm/sec)   p_kst 3.769231e-04   p_cons 2.826462e-01   p_joint 2.153846e-03

Joint ci ratio: 2.410309e-01	ci left: 1.658550e-03	ci right 2.119615e-03	k: 263	n:140000
Cons ci ratio: 1.672087e-02	ci left: 2.795442e-01	ci right 2.842649e-01	k: 39466	n:140000
KS ci ratio: 5.488078e-01	ci left: 2.650896e-04	ci right 4.708216e-04	k: 50	n:140000
ZFPM2   140000 perm   41 sec   (3400 perm/sec)   p_kst 3.571429e-04   p_cons 2.819000e-01   p_joint 1.878571e-03

Joint ci ratio: 2.628975e-01	ci left: 1.285593e-03	ci right 1.680746e-03	k: 221	n:150000
Cons ci ratio: 1.615605e-02	ci left: 2.795708e-01	ci right 2.841310e-01	k: 42277	n:150000
KS ci ratio: 5.237325e-01	ci left: 2.762351e-04	ci right 4.772407e-04	k: 55	n:150000
ZFPM2   150000 perm   45 sec   (3361 perm/sec)   p_kst 3.666667e-04   p_cons 2.818467e-01   p_joint 1.473333e-03

Joint ci ratio: 2.566199e-01	ci left: 1.269516e-03	ci right 1.648918e-03	k: 232	n:160000
Cons ci ratio: 1.561687e-02	ci left: 2.803198e-01	ci right 2.847381e-01	k: 45204	n:160000
KS ci ratio: 4.977425e-01	ci left: 2.916382e-04	ci right 4.897050e-04	k: 61	n:160000
ZFPM2   160000 perm   48 sec   (3323 perm/sec)   p_kst 3.812500e-04   p_cons 2.825250e-01   p_joint 1.450000e-03

Joint ci ratio: 2.438626e-01	ci left: 1.332686e-03	ci right 1.708172e-03	k: 257	n:170000
Cons ci ratio: 1.514736e-02	ci left: 2.804721e-01	ci right 2.847588e-01	k: 48044	n:170000
KS ci ratio: 4.684318e-01	ci left: 3.158140e-04	ci right 5.136424e-04	k: 69	n:170000
ZFPM2   170000 perm   52 sec   (3285 perm/sec)   p_kst 4.058824e-04   p_cons 2.826118e-01   p_joint 1.511765e-03

Joint ci ratio: 2.497585e-01	ci left: 1.196093e-03	ci right 1.542509e-03	k: 245	n:180000
Cons ci ratio: 1.472244e-02	ci left: 2.804819e-01	ci right 2.846474e-01	k: 50861	n:180000
KS ci ratio: 4.525470e-01	ci left: 3.228240e-04	ci right 5.160853e-04	k: 74	n:180000
ZFPM2   180000 perm   55 sec   (3249 perm/sec)   p_kst 4.111111e-04   p_cons 2.825611e-01   p_joint 1.361111e-03

Joint ci ratio: 2.487571e-01	ci left: 1.143006e-03	ci right 1.472512e-03	k: 247	n:190000
Cons ci ratio: 1.433213e-02	ci left: 2.804711e-01	ci right 2.845250e-01	k: 53674	n:190000
KS ci ratio: 4.354616e-01	ci left: 3.338822e-04	ci right 5.240095e-04	k: 80	n:190000
ZFPM2   190000 perm   59 sec   (3212 perm/sec)   p_kst 4.210526e-04   p_cons 2.824947e-01   p_joint 1.300000e-03

Joint ci ratio: 2.438905e-01	ci left: 1.132768e-03	ci right 1.451968e-03	k: 257	n:200000
Cons ci ratio: 1.397147e-02	ci left: 2.804577e-01	ci right 2.844086e-01	k: 56486	n:200000
KS ci ratio: 4.201756e-01	ci left: 3.439584e-04	ci right 5.310197e-04	k: 86	n:200000
ZFPM2   200000 perm   63 sec   (3169 perm/sec)   p_kst 4.300000e-04   p_cons 2.824300e-01   p_joint 1.285000e-03

Joint ci ratio: 2.388529e-01	ci left: 1.128040e-03	ci right 1.438370e-03	k: 268	n:210000
Cons ci ratio: 1.363882e-02	ci left: 2.803850e-01	ci right 2.842401e-01	k: 59285	n:210000
KS ci ratio: 3.999909e-01	ci left: 3.660181e-04	ci right 5.529844e-04	k: 95	n:210000
ZFPM2   210000 perm   67 sec   (3120 perm/sec)   p_kst 4.523810e-04   p_cons 2.823095e-01   p_joint 1.276190e-03

Joint ci ratio: 2.534254e-01	ci left: 9.487935e-04	ci right 1.228256e-03	k: 238	n:220000
Cons ci ratio: 1.331586e-02	ci left: 2.807146e-01	ci right 2.844821e-01	k: 62171	n:220000
KS ci ratio: 3.899641e-01	ci left: 3.698511e-04	ci right 5.528219e-04	k: 100	n:220000
ZFPM2   220000 perm   71 sec   (3086 perm/sec)   p_kst 4.545455e-04   p_cons 2.825955e-01   p_joint 1.081818e-03

Joint ci ratio: 2.623748e-01	ci left: 8.424654e-04	ci right 1.100812e-03	k: 222	n:230000
Cons ci ratio: 1.302442e-02	ci left: 2.807170e-01	ci right 2.844015e-01	k: 64988	n:230000
KS ci ratio: 3.788717e-01	ci left: 3.773372e-04	ci right 5.573816e-04	k: 106	n:230000
ZFPM2   230000 perm   75 sec   (3053 perm/sec)   p_kst 4.608696e-04   p_cons 2.825565e-01   p_joint 9.652174e-04

Joint ci ratio: 2.539693e-01	ci left: 8.658208e-04	ci right 1.121477e-03	k: 237	n:240000
Cons ci ratio: 1.274281e-02	ci left: 2.809904e-01	ci right 2.845981e-01	k: 67870	n:240000
KS ci ratio: 3.753819e-01	ci left: 3.691579e-04	ci right 5.432776e-04	k: 108	n:240000
ZFPM2   240000 perm   80 sec   (3005 perm/sec)   p_kst 4.500000e-04   p_cons 2.827917e-01   p_joint 9.875000e-04

Joint ci ratio: 2.659909e-01	ci left: 7.526526e-04	ci right 9.871682e-04	k: 216	n:250000
Cons ci ratio: 1.248596e-02	ci left: 2.810072e-01	ci right 2.845418e-01	k: 70693	n:250000
KS ci ratio: 3.719866e-01	ci left: 3.616399e-04	ci right 5.302950e-04	k: 110	n:250000
ZFPM2   250000 perm   84 sec   (2972 perm/sec)   p_kst 4.400000e-04   p_cons 2.827720e-01   p_joint 8.640000e-04

Joint ci ratio: 2.612197e-01	ci left: 7.524407e-04	ci right 9.819979e-04	k: 224	n:260000
Cons ci ratio: 1.224033e-02	ci left: 2.811462e-01	ci right 2.846125e-01	k: 73548	n:260000
KS ci ratio: 3.719898e-01	ci left: 3.477302e-04	ci right 5.099000e-04	k: 110	n:260000
ZFPM2   260000 perm   88 sec   (2940 perm/sec)   p_kst 4.230769e-04   p_cons 2.828769e-01   p_joint 8.615385e-04

Joint ci ratio: 2.606449e-01	ci left: 7.280327e-04	ci right 9.495749e-04	k: 225	n:270000
Cons ci ratio: 1.201501e-02	ci left: 2.810611e-01	ci right 2.844621e-01	k: 76345	n:270000
KS ci ratio: 3.703277e-01	ci left: 3.382092e-04	ci right 4.950630e-04	k: 111	n:270000
ZFPM2   270000 perm   93 sec   (2908 perm/sec)   p_kst 4.111111e-04   p_cons 2.827593e-01   p_joint 8.333333e-04

Joint ci ratio: 2.545231e-01	ci left: 7.387818e-04	ci right 9.574771e-04	k: 236	n:280000
Cons ci ratio: 1.180751e-02	ci left: 2.807830e-01	ci right 2.841215e-01	k: 79086	n:280000
KS ci ratio: 3.623278e-01	ci left: 3.423440e-04	ci right 4.968757e-04	k: 116	n:280000
ZFPM2   280000 perm   97 sec   (2877 perm/sec)   p_kst 4.142857e-04   p_cons 2.824500e-01   p_joint 8.428571e-04

Joint ci ratio: 2.518815e-01	ci left: 7.294534e-04	ci right 9.427946e-04	k: 241	n:290000
Cons ci ratio: 1.160269e-02	ci left: 2.807930e-01	ci right 2.840734e-01	k: 81905	n:290000
KS ci ratio: 3.592715e-01	ci left: 3.368103e-04	ci right 4.872615e-04	k: 118	n:290000
ZFPM2   290000 perm   102 sec   (2848 perm/sec)   p_kst 4.068966e-04   p_cons 2.824310e-01   p_joint 8.310345e-04

Joint ci ratio: 2.473243e-01	ci left: 7.332621e-04	ci right 9.432405e-04	k: 250	n:300000
Cons ci ratio: 1.140790e-02	ci left: 2.808129e-01	ci right 2.840380e-01	k: 84727	n:300000
KS ci ratio: 3.491474e-01	ci left: 3.468412e-04	ci right 4.964197e-04	k: 125	n:300000
ZFPM2   300000 perm   106 sec   (2818 perm/sec)   p_kst 4.166667e-04   p_cons 2.824233e-01   p_joint 8.333333e-04

Joint ci ratio: 2.420757e-01	ci left: 7.429173e-04	ci right 9.504680e-04	k: 261	n:310000
Cons ci ratio: 1.122411e-02	ci left: 2.807771e-01	ci right 2.839495e-01	k: 87532	n:310000
KS ci ratio: 3.373059e-01	ci left: 3.621839e-04	ci right 5.119299e-04	k: 134	n:310000
ZFPM2   310000 perm   111 sec   (2789 perm/sec)   p_kst 4.322581e-04   p_cons 2.823613e-01   p_joint 8.419355e-04

Joint ci ratio: 2.393514e-01	ci left: 7.373201e-04	ci right 9.406450e-04	k: 267	n:320000
Cons ci ratio: 1.104314e-02	ci left: 2.809561e-01	ci right 2.840791e-01	k: 90405	n:320000
KS ci ratio: 3.324173e-01	ci left: 3.623148e-04	ci right 5.094792e-04	k: 138	n:320000
ZFPM2   320000 perm   116 sec   (2759 perm/sec)   p_kst 4.312500e-04   p_cons 2.825156e-01   p_joint 8.343750e-04

Joint ci ratio: 2.380249e-01	ci left: 7.235237e-04	ci right 9.217751e-04	k: 270	n:330000
Cons ci ratio: 1.087398e-02	ci left: 2.810006e-01	ci right 2.840759e-01	k: 93237	n:330000
KS ci ratio: 3.288878e-01	ci left: 3.596718e-04	ci right 5.038835e-04	k: 141	n:330000
ZFPM2   330000 perm   121 sec   (2728 perm/sec)   p_kst 4.272727e-04   p_cons 2.825364e-01   p_joint 8.181818e-04

Joint ci ratio: 2.333354e-01	ci left: 7.326868e-04	ci right 9.289232e-04	k: 281	n:340000
Cons ci ratio: 1.071493e-02	ci left: 2.809460e-01	ci right 2.839754e-01	k: 96036	n:340000
KS ci ratio: 3.254684e-01	ci left: 3.571920e-04	ci right 4.986093e-04	k: 144	n:340000
ZFPM2   340000 perm   126 sec   (2699 perm/sec)   p_kst 4.235294e-04   p_cons 2.824588e-01   p_joint 8.264706e-04

Joint ci ratio: 2.277487e-01	ci left: 7.494438e-04	ci right 9.446874e-04	k: 295	n:350000
Cons ci ratio: 1.057592e-02	ci left: 2.803870e-01	ci right 2.833709e-01	k: 98657	n:350000
KS ci ratio: 3.221534e-01	ci left: 3.548612e-04	ci right 4.936292e-04	k: 147	n:350000
ZFPM2   350000 perm   131 sec   (2671 perm/sec)   p_kst 4.200000e-04   p_cons 2.818771e-01   p_joint 8.428571e-04

Joint ci ratio: 2.277514e-01	ci left: 7.286250e-04	ci right 9.184474e-04	k: 295	n:360000
Cons ci ratio: 1.043056e-02	ci left: 2.803086e-01	ci right 2.832505e-01	k: 101440	n:360000
KS ci ratio: 3.199995e-01	ci left: 3.501117e-04	ci right 4.859193e-04	k: 149	n:360000
ZFPM2   360000 perm   136 sec   (2646 perm/sec)   p_kst 4.138889e-04   p_cons 2.817778e-01   p_joint 8.194444e-04

Joint ci ratio: 2.281399e-01	ci left: 7.063831e-04	ci right 8.907690e-04	k: 294	n:370000
Cons ci ratio: 1.029035e-02	ci left: 2.802617e-01	ci right 2.831633e-01	k: 104233	n:370000
KS ci ratio: 3.168473e-01	ci left: 3.481093e-04	ci right 4.815404e-04	k: 152	n:370000
ZFPM2   370000 perm   141 sec   (2620 perm/sec)   p_kst 4.108108e-04   p_cons 2.817108e-01   p_joint 7.945946e-04

Joint ci ratio: 2.251080e-01	ci left: 7.076517e-04	ci right 8.895734e-04	k: 302	n:380000
Cons ci ratio: 1.015610e-02	ci left: 2.801992e-01	ci right 2.830620e-01	k: 107019	n:380000
KS ci ratio: 3.127850e-01	ci left: 3.486433e-04	ci right 4.802235e-04	k: 156	n:380000
ZFPM2   380000 perm   146 sec   (2595 perm/sec)   p_kst 4.105263e-04   p_cons 2.816289e-01   p_joint 7.947368e-04

Joint ci ratio: 2.630179e-01	ci left: 4.944312e-04	ci right 6.464822e-04	k: 221	n:390000
Cons ci ratio: 1.002507e-02	ci left: 2.802169e-01	ci right 2.830428e-01	k: 109835	n:390000
KS ci ratio: 3.088751e-01	ci left: 3.491602e-04	ci right 4.789639e-04	k: 160	n:390000
ZFPM2   390000 perm   152 sec   (2570 perm/sec)   p_kst 4.102564e-04   p_cons 2.816282e-01   p_joint 5.666667e-04

Joint ci ratio: 2.584025e-01	ci left: 5.007638e-04	ci right 6.516238e-04	k: 229	n:400000
Cons ci ratio: 9.904980e-03	ci left: 2.799893e-01	ci right 2.827789e-01	k: 112553	n:400000
KS ci ratio: 3.014744e-01	ci left: 3.589004e-04	ci right 4.885159e-04	k: 168	n:400000
ZFPM2   400000 perm   157 sec   (2540 perm/sec)   p_kst 4.200000e-04   p_cons 2.813825e-01   p_joint 5.725000e-04

Joint ci ratio: 2.556390e-01	ci left: 4.999596e-04	ci right 6.487097e-04	k: 234	n:410000
Cons ci ratio: 9.787034e-03	ci left: 2.798583e-01	ci right 2.826131e-01	k: 115306	n:410000
KS ci ratio: 2.988341e-01	ci left: 3.569128e-04	ci right 4.844674e-04	k: 171	n:410000
ZFPM2   410000 perm   163 sec   (2516 perm/sec)   p_kst 4.170732e-04   p_cons 2.812341e-01   p_joint 5.707317e-04

Joint ci ratio: 2.524366e-01	ci left: 5.014320e-04	ci right 6.484575e-04	k: 240	n:420000
Cons ci ratio: 9.672176e-03	ci left: 2.797765e-01	ci right 2.824980e-01	k: 118077	n:420000
KS ci ratio: 2.954188e-01	ci left: 3.572289e-04	ci right 4.831641e-04	k: 175	n:420000
ZFPM2   420000 perm   169 sec   (2488 perm/sec)   p_kst 4.166667e-04   p_cons 2.811357e-01   p_joint 5.714286e-04

Joint ci ratio: 2.498583e-01	ci left: 5.006669e-04	ci right 6.457354e-04	k: 245	n:430000
Cons ci ratio: 9.559838e-03	ci left: 2.797590e-01	ci right 2.824486e-01	k: 120874	n:430000
KS ci ratio: 2.929332e-01	ci left: 3.553832e-04	ci right 4.794179e-04	k: 178	n:430000
ZFPM2   430000 perm   174 sec   (2467 perm/sec)   p_kst 4.139535e-04   p_cons 2.811023e-01   p_joint 5.697674e-04

Joint ci ratio: 2.589732e-01	ci left: 4.531129e-04	ci right 5.899678e-04	k: 228	n:440000
Cons ci ratio: 9.452602e-03	ci left: 2.796881e-01	ci right 2.823466e-01	k: 123647	n:440000
KS ci ratio: 2.897141e-01	ci left: 3.557330e-04	ci right 4.782754e-04	k: 182	n:440000
ZFPM2   440000 perm   180 sec   (2445 perm/sec)   p_kst 4.136364e-04   p_cons 2.810159e-01   p_joint 5.181818e-04

Joint ci ratio: 2.642214e-01	ci left: 4.243542e-04	ci right 5.555502e-04	k: 219	n:450000
Cons ci ratio: 9.349152e-03	ci left: 2.796093e-01	ci right 2.822379e-01	k: 126415	n:450000
KS ci ratio: 2.873686e-01	ci left: 3.540120e-04	ci right 4.747950e-04	k: 185	n:450000
ZFPM2   450000 perm   186 sec   (2422 perm/sec)   p_kst 4.111111e-04   p_cons 2.809222e-01   p_joint 4.866667e-04

Joint ci ratio: 2.636241e-01	ci left: 4.171590e-04	ci right 5.457908e-04	k: 220	n:460000
Cons ci ratio: 9.244149e-03	ci left: 2.797470e-01	ci right 2.823471e-01	k: 129281	n:460000
KS ci ratio: 2.843276e-01	ci left: 3.543884e-04	ci right 4.737907e-04	k: 189	n:460000
ZFPM2   460000 perm   192 sec   (2401 perm/sec)   p_kst 4.108696e-04   p_cons 2.810457e-01   p_joint 4.782609e-04

Joint ci ratio: 2.648271e-01	ci left: 4.043094e-04	ci right 5.296422e-04	k: 218	n:470000
Cons ci ratio: 9.146553e-03	ci left: 2.797046e-01	ci right 2.822768e-01	k: 132065	n:470000
KS ci ratio: 2.806585e-01	ci left: 3.567330e-04	ci right 4.750999e-04	k: 194	n:470000
ZFPM2   470000 perm   198 sec   (2377 perm/sec)   p_kst 4.127660e-04   p_cons 2.809894e-01   p_joint 4.638298e-04

Joint ci ratio: 2.630321e-01	ci left: 4.017227e-04	ci right 5.252707e-04	k: 221	n:480000
Cons ci ratio: 9.048812e-03	ci left: 2.798057e-01	ci right 2.823511e-01	k: 134917	n:480000
KS ci ratio: 2.785245e-01	ci left: 3.551129e-04	ci right 4.718891e-04	k: 197	n:480000
ZFPM2   480000 perm   204 sec   (2356 perm/sec)   p_kst 4.104167e-04   p_cons 2.810771e-01   p_joint 4.604167e-04

Joint ci ratio: 2.612731e-01	ci left: 3.992444e-04	ci right 5.210749e-04	k: 224	n:490000
Cons ci ratio: 8.952330e-03	ci left: 2.799843e-01	ci right 2.825040e-01	k: 137809	n:490000
KS ci ratio: 2.778247e-01	ci left: 3.497640e-04	ci right 4.644417e-04	k: 198	n:490000
ZFPM2   490000 perm   210 sec   (2336 perm/sec)   p_kst 4.040816e-04   p_cons 2.812429e-01   p_joint 4.571429e-04

Joint ci ratio: 2.601202e-01	ci left: 3.949980e-04	ci right 5.149144e-04	k: 226	n:500000
Cons ci ratio: 8.864611e-03	ci left: 2.798942e-01	ci right 2.823883e-01	k: 140570	n:500000
KS ci ratio: 2.757542e-01	ci left: 3.483523e-04	ci right 4.615683e-04	k: 201	n:500000
ZFPM2   500000 perm   216 sec   (2315 perm/sec)   p_kst 4.020000e-04   p_cons 2.811400e-01   p_joint 4.520000e-04

Joint ci ratio: 2.624450e-01	ci left: 3.799230e-04	ci right 4.964629e-04	k: 222	n:510000
Cons ci ratio: 8.778951e-03	ci left: 2.798293e-01	ci right 2.822987e-01	k: 143342	n:510000
KS ci ratio: 2.710962e-01	ci left: 3.543067e-04	ci right 4.671818e-04	k: 208	n:510000
ZFPM2   510000 perm   222 sec   (2296 perm/sec)   p_kst 4.078431e-04   p_cons 2.810627e-01   p_joint 4.352941e-04

Joint ci ratio: 2.573029e-01	ci left: 3.887975e-04	ci right 5.053477e-04	k: 231	n:520000
Cons ci ratio: 8.696266e-03	ci left: 2.797421e-01	ci right 2.821873e-01	k: 146101	n:520000
KS ci ratio: 2.666666e-01	ci left: 3.600474e-04	ci right 4.725641e-04	k: 215	n:520000
ZFPM2   520000 perm   228 sec   (2277 perm/sec)   p_kst 4.134615e-04   p_cons 2.809635e-01   p_joint 4.442308e-04

Joint ci ratio: 2.685397e-01	ci left: 3.479731e-04	ci right 4.576091e-04	k: 212	n:530000
Cons ci ratio: 8.611127e-03	ci left: 2.798806e-01	ci right 2.823029e-01	k: 148978	n:530000
KS ci ratio: 2.648341e-01	ci left: 3.585373e-04	ci right 4.696845e-04	k: 218	n:530000
ZFPM2   530000 perm   235 sec   (2255 perm/sec)   p_kst 4.113208e-04   p_cons 2.810906e-01   p_joint 4.000000e-04

Joint ci ratio: 2.666686e-01	ci left: 3.467120e-04	ci right 4.550623e-04	k: 215	n:540000
Cons ci ratio: 8.533247e-03	ci left: 2.797866e-01	ci right 2.821861e-01	k: 151732	n:540000
KS ci ratio: 2.519304e-01	ci left: 3.917346e-04	ci right 5.063287e-04	k: 241	n:540000
ZFPM2   540000 perm   241 sec   (2237 perm/sec)   p_kst 4.462963e-04   p_cons 2.809852e-01   p_joint 3.981481e-04

Joint ci ratio: 2.642332e-01	ci left: 3.471970e-04	ci right 4.545440e-04	k: 219	n:550000
Cons ci ratio: 8.454322e-03	ci left: 2.798450e-01	ci right 2.822227e-01	k: 154568	n:550000
KS ci ratio: 2.498739e-01	ci left: 3.914276e-04	ci right 5.048518e-04	k: 245	n:550000
ZFPM2   550000 perm   248 sec   (2220 perm/sec)   p_kst 4.454545e-04   p_cons 2.810327e-01   p_joint 3.981818e-04

Joint ci ratio: 1.876607e-01	ci left: 7.055191e-04	ci right 8.532959e-04	k: 435	n:560000
Cons ci ratio: 8.376585e-03	ci left: 2.799478e-01	ci right 2.823044e-01	k: 157430	n:560000
KS ci ratio: 2.483644e-01	ci left: 3.894605e-04	ci right 5.015276e-04	k: 248	n:560000
ZFPM2   560000 perm   254 sec   (2202 perm/sec)   p_kst 4.428571e-04   p_cons 2.811250e-01   p_joint 7.767857e-04

Joint ci ratio: 1.928205e-01	ci left: 6.547104e-04	ci right 7.960580e-04	k: 412	n:570000
Cons ci ratio: 8.302575e-03	ci left: 2.799683e-01	ci right 2.823041e-01	k: 160247	n:570000
KS ci ratio: 2.463934e-01	ci left: 3.892104e-04	ci right 5.001806e-04	k: 252	n:570000
ZFPM2   570000 perm   261 sec   (2184 perm/sec)   p_kst 4.421053e-04   p_cons 2.811351e-01   p_joint 7.228070e-04

Joint ci ratio: 2.468829e-01	ci left: 3.808821e-04	ci right 4.897266e-04	k: 251	n:580000
Cons ci ratio: 8.227930e-03	ci left: 2.801138e-01	ci right 2.824298e-01	k: 163137	n:580000
KS ci ratio: 2.584257e-01	ci left: 3.453506e-04	ci right 4.494013e-04	k: 229	n:580000
ZFPM2   580000 perm   268 sec   (2167 perm/sec)   p_kst 3.948276e-04   p_cons 2.812707e-01   p_joint 4.327586e-04

Joint ci ratio: 2.463952e-01	ci left: 3.760165e-04	ci right 4.832258e-04	k: 252	n:590000
Cons ci ratio: 8.158989e-03	ci left: 2.800700e-01	ci right 2.823661e-01	k: 165918	n:590000
KS ci ratio: 2.584265e-01	ci left: 3.394971e-04	ci right 4.417845e-04	k: 229	n:590000
ZFPM2   590000 perm   274 sec   (2151 perm/sec)   p_kst 3.881356e-04   p_cons 2.812169e-01   p_joint 4.271186e-04

Joint ci ratio: 2.449475e-01	ci left: 3.744417e-04	ci right 4.804793e-04	k: 255	n:600000
Cons ci ratio: 8.091718e-03	ci left: 2.800293e-01	ci right 2.823061e-01	k: 168700	n:600000
KS ci ratio: 2.556623e-01	ci left: 3.416353e-04	ci right 4.432904e-04	k: 234	n:600000
ZFPM2   600000 perm   282 sec   (2130 perm/sec)   p_kst 3.900000e-04   p_cons 2.811667e-01   p_joint 4.250000e-04

Joint ci ratio: 2.305334e-01	ci left: 4.191835e-04	ci right 5.299129e-04	k: 288	n:610000
Cons ci ratio: 8.025141e-03	ci left: 2.800376e-01	ci right 2.822956e-01	k: 171511	n:610000
KS ci ratio: 2.535138e-01	ci left: 3.421738e-04	ci right 4.429982e-04	k: 238	n:610000
ZFPM2   610000 perm   289 sec   (2112 perm/sec)   p_kst 3.901639e-04   p_cons 2.811656e-01   p_joint 4.721311e-04

Joint ci ratio: 2.333793e-01	ci left: 4.017877e-04	ci right 5.094213e-04	k: 281	n:620000
Cons ci ratio: 7.958497e-03	ci left: 2.801311e-01	ci right 2.823710e-01	k: 174375	n:620000
KS ci ratio: 2.514186e-01	ci left: 3.426983e-04	ci right 4.427121e-04	k: 242	n:620000
ZFPM2   620000 perm   296 sec   (2095 perm/sec)   p_kst 3.903226e-04   p_cons 2.812500e-01   p_joint 4.532258e-04

Joint ci ratio: 2.321480e-01	ci left: 3.998943e-04	ci right 5.063744e-04	k: 284	n:630000
Cons ci ratio: 7.892402e-03	ci left: 2.802771e-01	ci right 2.824995e-01	k: 177274	n:630000
KS ci ratio: 2.498811e-01	ci left: 3.417214e-04	ci right 4.407453e-04	k: 245	n:630000
ZFPM2   630000 perm   303 sec   (2079 perm/sec)   p_kst 3.888889e-04   p_cons 2.813873e-01   p_joint 4.507937e-04

Joint ci ratio: 2.297420e-01	ci left: 4.024787e-04	ci right 5.083786e-04	k: 290	n:640000
Cons ci ratio: 7.830436e-03	ci left: 2.802891e-01	ci right 2.824941e-01	k: 180090	n:640000
KS ci ratio: 2.473795e-01	ci left: 3.437078e-04	ci right 4.421569e-04	k: 250	n:640000
ZFPM2   640000 perm   310 sec   (2063 perm/sec)   p_kst 3.906250e-04   p_cons 2.813906e-01   p_joint 4.531250e-04

Joint ci ratio: 1.747164e-01	ci left: 7.062397e-04	ci right 8.428883e-04	k: 502	n:650000
Cons ci ratio: 7.770558e-03	ci left: 2.802671e-01	ci right 2.824549e-01	k: 182884	n:650000
KS ci ratio: 2.444743e-01	ci left: 3.470820e-04	ci right 4.451529e-04	k: 256	n:650000
ZFPM2   650000 perm   318 sec   (2046 perm/sec)   p_kst 3.938462e-04   p_cons 2.813600e-01   p_joint 7.723077e-04

Joint ci ratio: 1.733433e-01	ci left: 7.071324e-04	ci right 8.427659e-04	k: 510	n:660000
Cons ci ratio: 7.711858e-03	ci left: 2.802548e-01	ci right 2.824259e-01	k: 185684	n:660000
KS ci ratio: 2.440007e-01	ci left: 3.432455e-04	ci right 4.400159e-04	k: 257	n:660000
ZFPM2   660000 perm   325 sec   (2030 perm/sec)   p_kst 3.893939e-04   p_cons 2.813394e-01   p_joint 7.727273e-04

Joint ci ratio: 1.708529e-01	ci left: 7.180023e-04	ci right 8.535383e-04	k: 525	n:670000
Cons ci ratio: 7.654187e-03	ci left: 2.802579e-01	ci right 2.824127e-01	k: 188494	n:670000
KS ci ratio: 2.394040e-01	ci left: 3.521442e-04	ci right 4.492757e-04	k: 267	n:670000
ZFPM2   670000 perm   333 sec   (2015 perm/sec)   p_kst 3.985075e-04   p_cons 2.813343e-01   p_joint 7.835821e-04

Joint ci ratio: 1.690936e-01	ci left: 7.229319e-04	ci right 8.578501e-04	k: 536	n:680000
Cons ci ratio: 7.596437e-03	ci left: 2.803329e-01	ci right 2.824719e-01	k: 191353	n:680000
KS ci ratio: 2.359082e-01	ci left: 3.580300e-04	ci right 4.551325e-04	k: 275	n:680000
ZFPM2   680000 perm   340 sec   (2000 perm/sec)   p_kst 4.044118e-04   p_cons 2.814015e-01   p_joint 7.882353e-04

Joint ci ratio: 1.681570e-01	ci left: 7.207832e-04	ci right 8.544798e-04	k: 542	n:690000
Cons ci ratio: 7.542785e-03	ci left: 2.802552e-01	ci right 2.823785e-01	k: 194108	n:690000
KS ci ratio: 2.346366e-01	ci left: 3.569327e-04	ci right 4.531400e-04	k: 278	n:690000
ZFPM2   690000 perm   348 sec   (1985 perm/sec)   p_kst 4.028986e-04   p_cons 2.813159e-01   p_joint 7.855072e-04

Joint ci ratio: 1.711818e-01	ci left: 6.844949e-04	ci right 8.139801e-04	k: 523	n:700000
Cons ci ratio: 7.489724e-03	ci left: 2.802084e-01	ci right 2.823163e-01	k: 196883	n:700000
KS ci ratio: 2.333854e-01	ci left: 3.558681e-04	ci right 4.512032e-04	k: 281	n:700000
ZFPM2   700000 perm   355 sec   (1971 perm/sec)   p_kst 4.014286e-04   p_cons 2.812614e-01   p_joint 7.471429e-04

Joint ci ratio: 1.703712e-01	ci left: 6.815953e-04	ci right 8.098587e-04	k: 528	n:710000
Cons ci ratio: 7.434970e-03	ci left: 2.803148e-01	ci right 2.824081e-01	k: 199766	n:710000
KS ci ratio: 2.325625e-01	ci left: 3.535083e-04	ci right 4.478293e-04	k: 283	n:710000
ZFPM2   710000 perm   363 sec   (1955 perm/sec)   p_kst 3.985915e-04   p_cons 2.813606e-01   p_joint 7.436620e-04

Joint ci ratio: 1.702111e-01	ci left: 6.734581e-04	ci right 8.000590e-04	k: 529	n:720000
Cons ci ratio: 7.382413e-03	ci left: 2.803629e-01	ci right 2.824417e-01	k: 202609	n:720000
KS ci ratio: 2.313440e-01	ci left: 3.525230e-04	ci right 4.460178e-04	k: 286	n:720000
ZFPM2   720000 perm   371 sec   (1942 perm/sec)   p_kst 3.972222e-04   p_cons 2.814014e-01   p_joint 7.347222e-04

Joint ci ratio: 1.721737e-01	ci left: 6.484979e-04	ci right 7.719582e-04	k: 517	n:730000
Cons ci ratio: 7.331898e-03	ci left: 2.803577e-01	ci right 2.824221e-01	k: 205414	n:730000
KS ci ratio: 2.297485e-01	ci left: 3.528569e-04	ci right 4.457033e-04	k: 290	n:730000
ZFPM2   730000 perm   379 sec   (1928 perm/sec)   p_kst 3.972603e-04   p_cons 2.813890e-01   p_joint 7.082192e-04

Joint ci ratio: 1.713489e-01	ci left: 6.462006e-04	ci right 7.685734e-04	k: 522	n:740000
Cons ci ratio: 7.281385e-03	ci left: 2.804094e-01	ci right 2.824599e-01	k: 208261	n:740000
KS ci ratio: 2.285735e-01	ci left: 3.519099e-04	ci right 4.439667e-04	k: 293	n:740000
ZFPM2   740000 perm   387 sec   (1914 perm/sec)   p_kst 3.959459e-04   p_cons 2.814338e-01   p_joint 7.054054e-04

Joint ci ratio: 1.703746e-01	ci left: 6.452425e-04	ci right 7.666676e-04	k: 528	n:750000
Cons ci ratio: 7.232020e-03	ci left: 2.804531e-01	ci right 2.824900e-01	k: 211103	n:750000
KS ci ratio: 2.278003e-01	ci left: 3.497320e-04	ci right 4.408661e-04	k: 295	n:750000
ZFPM2   750000 perm   395 sec   (1900 perm/sec)   p_kst 3.933333e-04   p_cons 2.814707e-01   p_joint 7.040000e-04

Joint ci ratio: 1.692584e-01	ci left: 6.455715e-04	ci right 7.661815e-04	k: 535	n:760000
Cons ci ratio: 7.185749e-03	ci left: 2.803774e-01	ci right 2.824006e-01	k: 213855	n:760000
KS ci ratio: 2.266547e-01	ci left: 3.488529e-04	ci right 4.392369e-04	k: 298	n:760000
ZFPM2   760000 perm   403 sec   (1887 perm/sec)   p_kst 3.921053e-04   p_cons 2.813882e-01   p_joint 7.039474e-04

Joint ci ratio: 1.687871e-01	ci left: 6.409186e-04	ci right 7.602920e-04	k: 538	n:770000
Cons ci ratio: 7.138200e-03	ci left: 2.804256e-01	ci right 2.824358e-01	k: 216701	n:770000
KS ci ratio: 2.259007e-01	ci left: 3.467725e-04	ci right 4.362770e-04	k: 300	n:770000
ZFPM2   770000 perm   411 sec   (1873 perm/sec)   p_kst 3.896104e-04   p_cons 2.814299e-01   p_joint 6.987013e-04

Joint ci ratio: 1.703769e-01	ci left: 6.204248e-04	ci right 7.371813e-04	k: 528	n:780000
Cons ci ratio: 7.091268e-03	ci left: 2.804906e-01	ci right 2.824880e-01	k: 219561	n:780000
KS ci ratio: 2.251542e-01	ci left: 3.447459e-04	ci right 4.333925e-04	k: 302	n:780000
ZFPM2   780000 perm   419 sec   (1860 perm/sec)   p_kst 3.871795e-04   p_cons 2.814885e-01   p_joint 6.769231e-04

Joint ci ratio: 1.689455e-01	ci left: 6.234801e-04	ci right 7.397255e-04	k: 537	n:790000
Cons ci ratio: 7.045492e-03	ci left: 2.805401e-01	ci right 2.825248e-01	k: 222410	n:790000
KS ci ratio: 2.233190e-01	ci left: 3.463557e-04	ci right 4.345905e-04	k: 307	n:790000
ZFPM2   790000 perm   428 sec   (1846 perm/sec)   p_kst 3.886076e-04   p_cons 2.815316e-01   p_joint 6.797468e-04

Joint ci ratio: 1.681661e-01	ci left: 6.216728e-04	ci right 7.369924e-04	k: 542	n:800000
Cons ci ratio: 7.001629e-03	ci left: 2.805284e-01	ci right 2.825007e-01	k: 225211	n:800000
KS ci ratio: 2.225978e-01	ci left: 3.443866e-04	ci right 4.317975e-04	k: 309	n:800000
ZFPM2   800000 perm   436 sec   (1833 perm/sec)   p_kst 3.862500e-04   p_cons 2.815138e-01   p_joint 6.775000e-04

Joint ci ratio: 2.077138e-01	ci left: 3.938697e-04	ci right 4.863073e-04	k: 355	n:810000
Cons ci ratio: 6.957832e-03	ci left: 2.805602e-01	ci right 2.825203e-01	k: 228047	n:810000
KS ci ratio: 2.218834e-01	ci left: 3.424666e-04	ci right 4.290731e-04	k: 311	n:810000
ZFPM2   810000 perm   445 sec   (1821 perm/sec)   p_kst 3.839506e-04   p_cons 2.815395e-01   p_joint 4.382716e-04

Joint ci ratio: 2.071331e-01	ci left: 3.913787e-04	ci right 4.829423e-04	k: 357	n:820000
Cons ci ratio: 6.916369e-03	ci left: 2.805024e-01	ci right 2.824504e-01	k: 230810	n:820000
KS ci ratio: 2.218839e-01	ci left: 3.382901e-04	ci right 4.238406e-04	k: 311	n:820000
ZFPM2   820000 perm   453 sec   (1809 perm/sec)   p_kst 3.792683e-04   p_cons 2.814756e-01   p_joint 4.353659e-04

Joint ci ratio: 2.080074e-01	ci left: 3.832365e-04	ci right 4.733219e-04	k: 354	n:830000
Cons ci ratio: 6.873754e-03	ci left: 2.805567e-01	ci right 2.824930e-01	k: 233665	n:830000
KS ci ratio: 2.190923e-01	ci left: 3.433207e-04	ci right 4.289040e-04	k: 319	n:830000
ZFPM2   830000 perm   462 sec   (1797 perm/sec)   p_kst 3.843373e-04   p_cons 2.815241e-01   p_joint 4.265060e-04

Joint ci ratio: 2.068453e-01	ci left: 3.831887e-04	ci right 4.726960e-04	k: 358	n:840000
Cons ci ratio: 6.833868e-03	ci left: 2.804944e-01	ci right 2.824190e-01	k: 236423	n:840000
KS ci ratio: 2.177356e-01	ci left: 3.437349e-04	ci right 4.288200e-04	k: 323	n:840000
ZFPM2   840000 perm   470 sec   (1786 perm/sec)   p_kst 3.845238e-04   p_cons 2.814560e-01   p_joint 4.261905e-04

Joint ci ratio: 2.062719e-01	ci left: 3.809118e-04	ci right 4.696095e-04	k: 360	n:850000
Cons ci ratio: 6.794964e-03	ci left: 2.804160e-01	ci right 2.823290e-01	k: 239166	n:850000
KS ci ratio: 2.170670e-01	ci left: 3.419158e-04	ci right 4.262559e-04	k: 325	n:850000
ZFPM2   850000 perm   479 sec   (1774 perm/sec)   p_kst 3.823529e-04   p_cons 2.813718e-01   p_joint 4.235294e-04

Joint ci ratio: 2.051385e-01	ci left: 3.808942e-04	ci right 4.690393e-04	k: 364	n:860000
Cons ci ratio: 6.754017e-03	ci left: 2.805009e-01	ci right 2.824029e-01	k: 242048	n:860000
KS ci ratio: 2.164044e-01	ci left: 3.401393e-04	ci right 4.237511e-04	k: 327	n:860000
ZFPM2   860000 perm   488 sec   (1762 perm/sec)   p_kst 3.802326e-04   p_cons 2.814512e-01   p_joint 4.232558e-04

Joint ci ratio: 2.059876e-01	ci left: 3.732451e-04	ci right 4.600227e-04	k: 361	n:870000
Cons ci ratio: 6.715461e-03	ci left: 2.804839e-01	ci right 2.823750e-01	k: 244843	n:870000
KS ci ratio: 2.164049e-01	ci left: 3.362296e-04	ci right 4.188805e-04	k: 327	n:870000
ZFPM2   870000 perm   497 sec   (1751 perm/sec)   p_kst 3.758621e-04   p_cons 2.814287e-01   p_joint 4.149425e-04

Joint ci ratio: 2.043013e-01	ci left: 3.754717e-04	ci right 4.619631e-04	k: 367	n:880000
Cons ci ratio: 6.676846e-03	ci left: 2.805106e-01	ci right 2.823909e-01	k: 247676	n:880000
KS ci ratio: 2.134950e-01	ci left: 3.420857e-04	ci right 4.248974e-04	k: 336	n:880000
ZFPM2   880000 perm   506 sec   (1740 perm/sec)   p_kst 3.818182e-04   p_cons 2.814500e-01   p_joint 4.170455e-04

Joint ci ratio: 2.031999e-01	ci left: 3.755180e-04	ci right 4.614958e-04	k: 371	n:890000
Cons ci ratio: 6.638372e-03	ci left: 2.805681e-01	ci right 2.824379e-01	k: 250537	n:890000
KS ci ratio: 2.122391e-01	ci left: 3.424968e-04	ci right 4.248569e-04	k: 340	n:890000
ZFPM2   890000 perm   515 sec   (1729 perm/sec)   p_kst 3.820225e-04   p_cons 2.815022e-01   p_joint 4.168539e-04

Joint ci ratio: 2.015806e-01	ci left: 3.776745e-04	ci right 4.633721e-04	k: 377	n:900000
Cons ci ratio: 6.600991e-03	ci left: 2.805977e-01	ci right 2.824571e-01	k: 253374	n:900000
KS ci ratio: 2.122396e-01	ci left: 3.386912e-04	ci right 4.201363e-04	k: 340	n:900000
ZFPM2   900000 perm   524 sec   (1718 perm/sec)   p_kst 3.777778e-04   p_cons 2.815267e-01   p_joint 4.188889e-04

Joint ci ratio: 2.032009e-01	ci left: 3.672647e-04	ci right 4.513533e-04	k: 371	n:910000
Cons ci ratio: 6.564074e-03	ci left: 2.806365e-01	ci right 2.824858e-01	k: 256220	n:910000
KS ci ratio: 2.113122e-01	ci left: 3.380912e-04	ci right 4.189908e-04	k: 343	n:910000
ZFPM2   910000 perm   533 sec   (1707 perm/sec)   p_kst 3.769231e-04   p_cons 2.815604e-01   p_joint 4.076923e-04

Joint ci ratio: 2.026571e-01	ci left: 3.653361e-04	ci right 4.487316e-04	k: 373	n:920000
Cons ci ratio: 6.527839e-03	ci left: 2.806702e-01	ci right 2.825094e-01	k: 259062	n:920000
KS ci ratio: 2.094928e-01	ci left: 3.405945e-04	ci right 4.213013e-04	k: 349	n:920000
ZFPM2   920000 perm   543 sec   (1695 perm/sec)   p_kst 3.793478e-04   p_cons 2.815891e-01   p_joint 4.054348e-04

Joint ci ratio: 2.021176e-01	ci left: 3.634493e-04	ci right 4.461659e-04	k: 375	n:930000
Cons ci ratio: 6.491629e-03	ci left: 2.807387e-01	ci right 2.825681e-01	k: 261937	n:930000
KS ci ratio: 2.094933e-01	ci left: 3.369321e-04	ci right 4.167713e-04	k: 349	n:930000
ZFPM2   930000 perm   552 sec   (1683 perm/sec)   p_kst 3.752688e-04   p_cons 2.816527e-01   p_joint 4.032258e-04

Joint ci ratio: 2.002617e-01	ci left: 3.666546e-04	ci right 4.492408e-04	k: 382	n:940000
Cons ci ratio: 6.456489e-03	ci left: 2.807759e-01	ci right 2.825956e-01	k: 264784	n:940000
KS ci ratio: 2.074289e-01	ci left: 3.404059e-04	ci right 4.201725e-04	k: 356	n:940000
ZFPM2   940000 perm   562 sec   (1673 perm/sec)   p_kst 3.787234e-04   p_cons 2.816851e-01   p_joint 4.063830e-04

Joint ci ratio: 1.992241e-01	ci left: 3.667950e-04	ci right 4.489328e-04	k: 386	n:950000
Cons ci ratio: 6.422850e-03	ci left: 2.807535e-01	ci right 2.825636e-01	k: 267575	n:950000
KS ci ratio: 2.065629e-01	ci left: 3.398168e-04	ci right 4.190710e-04	k: 359	n:950000
ZFPM2   950000 perm   571 sec   (1663 perm/sec)   p_kst 3.778947e-04   p_cons 2.816579e-01   p_joint 4.063158e-04

Joint ci ratio: 2.018505e-01	ci left: 3.530803e-04	ci right 4.333178e-04	k: 376	n:960000
Cons ci ratio: 6.390833e-03	ci left: 2.806619e-01	ci right 2.824623e-01	k: 270299	n:960000
KS ci ratio: 2.051431e-01	ci left: 3.412170e-04	ci right 4.201820e-04	k: 364	n:960000
ZFPM2   960000 perm   581 sec   (1653 perm/sec)   p_kst 3.791667e-04   p_cons 2.815615e-01   p_joint 3.916667e-04

Joint ci ratio: 2.026592e-01	ci left: 3.465040e-04	ci right 4.256016e-04	k: 373	n:970000
Cons ci ratio: 6.357475e-03	ci left: 2.806875e-01	ci right 2.824787e-01	k: 273135	n:970000
KS ci ratio: 2.034772e-01	ci left: 3.435684e-04	ci right 4.223518e-04	k: 370	n:970000
ZFPM2   970000 perm   590 sec   (1643 perm/sec)   p_kst 3.814433e-04   p_cons 2.815825e-01   p_joint 3.845361e-04

Joint ci ratio: 2.021197e-01	ci left: 3.449056e-04	ci right 4.234028e-04	k: 375	n:980000
Cons ci ratio: 6.325384e-03	ci left: 2.806648e-01	ci right 2.824467e-01	k: 275924	n:980000
KS ci ratio: 2.015841e-01	ci left: 3.468433e-04	ci right 4.255466e-04	k: 377	n:980000
ZFPM2   980000 perm   600 sec   (1634 perm/sec)   p_kst 3.846939e-04   p_cons 2.815551e-01   p_joint 3.826531e-04

Joint ci ratio: 2.015844e-01	ci left: 3.433398e-04	ci right 4.212482e-04	k: 377	n:990000
Cons ci ratio: 6.292706e-03	ci left: 2.807111e-01	ci right 2.824841e-01	k: 278781	n:990000
KS ci ratio: 2.013182e-01	ci left: 3.442990e-04	ci right 4.223092e-04	k: 378	n:990000
ZFPM2   990000 perm   610 sec   (1624 perm/sec)   p_kst 3.818182e-04   p_cons 2.815970e-01   p_joint 3.808081e-04

Joint ci ratio: 2.015848e-01	ci left: 3.399063e-04	ci right 4.170358e-04	k: 377	n:1000000
Cons ci ratio: 6.261364e-03	ci left: 2.807026e-01	ci right 2.824667e-01	k: 281584	n:1000000
KS ci ratio: 2.010534e-01	ci left: 3.418056e-04	ci right 4.191365e-04	k: 379	n:1000000
ZFPM2   1000000 perm   619 sec   (1614 perm/sec)   p_kst 3.790000e-04   p_cons 2.815840e-01   p_joint 3.770000e-04

Joint ci ratio: 2.007897e-01	ci left: 3.393616e-04	ci right 4.160265e-04	k: 380	n:1010000
Cons ci ratio: 6.229602e-03	ci left: 2.807516e-01	ci right 2.825070e-01	k: 284445	n:1010000
KS ci ratio: 2.000035e-01	ci left: 3.421829e-04	ci right 4.191456e-04	k: 383	n:1010000
ZFPM2   1010000 perm   629 sec   (1605 perm/sec)   p_kst 3.792079e-04   p_cons 2.816287e-01   p_joint 3.762376e-04

Joint ci ratio: 1.997439e-01	ci left: 3.397595e-04	ci right 4.160658e-04	k: 384	n:1020000
Cons ci ratio: 6.199339e-03	ci left: 2.807331e-01	ci right 2.824799e-01	k: 287238	n:1020000
KS ci ratio: 1.989699e-01	ci left: 3.425539e-04	ci right 4.191535e-04	k: 387	n:1020000
ZFPM2   1020000 perm   639 sec   (1596 perm/sec)   p_kst 3.794118e-04   p_cons 2.816059e-01   p_joint 3.764706e-04

Joint ci ratio: 1.989703e-01	ci left: 3.392281e-04	ci right 4.150841e-04	k: 387	n:1030000
Cons ci ratio: 6.168507e-03	ci left: 2.807810e-01	ci right 2.825193e-01	k: 290099	n:1030000
KS ci ratio: 1.979521e-01	ci left: 3.429186e-04	ci right 4.191603e-04	k: 391	n:1030000
ZFPM2   1030000 perm   649 sec   (1586 perm/sec)   p_kst 3.796117e-04   p_cons 2.816495e-01   p_joint 3.757282e-04

Joint ci ratio: 1.979525e-01	ci left: 3.396213e-04	ci right 4.151299e-04	k: 391	n:1040000
Cons ci ratio: 6.138290e-03	ci left: 2.808174e-01	ci right 2.825473e-01	k: 292949	n:1040000
KS ci ratio: 1.971991e-01	ci left: 3.423633e-04	ci right 4.181570e-04	k: 394	n:1040000
ZFPM2   1040000 perm   660 sec   (1576 perm/sec)   p_kst 3.788462e-04   p_cons 2.816817e-01   p_joint 3.759615e-04

Joint ci ratio: 1.971994e-01	ci left: 3.391026e-04	ci right 4.141746e-04	k: 394	n:1050000
Cons ci ratio: 6.109463e-03	ci left: 2.807903e-01	ci right 2.825119e-01	k: 295733	n:1050000
KS ci ratio: 1.959626e-01	ci left: 3.436302e-04	ci right 4.191705e-04	k: 399	n:1050000
ZFPM2   1050000 perm   670 sec   (1567 perm/sec)   p_kst 3.800000e-04   p_cons 2.816505e-01   p_joint 3.752381e-04

Joint ci ratio: 1.964549e-01	ci left: 3.385942e-04	ci right 4.132368e-04	k: 397	n:1060000
Cons ci ratio: 6.079265e-03	ci left: 2.808815e-01	ci right 2.825952e-01	k: 298642	n:1060000
KS ci ratio: 1.945090e-01	ci left: 3.457722e-04	ci right 4.211527e-04	k: 405	n:1060000
ZFPM2   1060000 perm   681 sec   (1558 perm/sec)   p_kst 3.820755e-04   p_cons 2.817377e-01   p_joint 3.745283e-04

Joint ci ratio: 1.964552e-01	ci left: 3.354297e-04	ci right 4.093749e-04	k: 397	n:1070000
Cons ci ratio: 6.050112e-03	ci left: 2.809309e-01	ci right 2.826366e-01	k: 301508	n:1070000
KS ci ratio: 1.937944e-01	ci left: 3.452081e-04	ci right 4.201566e-04	k: 408	n:1070000
ZFPM2   1070000 perm   691 sec   (1549 perm/sec)   p_kst 3.813084e-04   p_cons 2.817832e-01   p_joint 3.710280e-04

Joint ci ratio: 1.949907e-01	ci left: 3.376073e-04	ci right 4.114118e-04	k: 403	n:1080000
Cons ci ratio: 6.021869e-03	ci left: 2.809461e-01	ci right 2.826439e-01	k: 304338	n:1080000
KS ci ratio: 1.935582e-01	ci left: 3.428927e-04	ci right 4.172371e-04	k: 409	n:1080000
ZFPM2   1080000 perm   701 sec   (1540 perm/sec)   p_kst 3.787037e-04   p_cons 2.817944e-01   p_joint 3.731481e-04

Joint ci ratio: 1.937951e-01	ci left: 3.388739e-04	ci right 4.124475e-04	k: 408	n:1090000
Cons ci ratio: 5.994073e-03	ci left: 2.809574e-01	ci right 2.826474e-01	k: 307164	n:1090000
KS ci ratio: 1.933228e-01	ci left: 3.406199e-04	ci right 4.143711e-04	k: 410	n:1090000
ZFPM2   1090000 perm   712 sec   (1532 perm/sec)   p_kst 3.761468e-04   p_cons 2.818018e-01   p_joint 3.743119e-04

Joint ci ratio: 1.926211e-01	ci left: 3.401188e-04	ci right 4.134630e-04	k: 413	n:1100000
Cons ci ratio: 5.965988e-03	ci left: 2.810139e-01	ci right 2.826963e-01	k: 310040	n:1100000
KS ci ratio: 1.923888e-01	ci left: 3.409841e-04	ci right 4.144158e-04	k: 414	n:1100000
ZFPM2   1100000 perm   722 sec   (1523 perm/sec)   p_kst 3.763636e-04   p_cons 2.818545e-01   p_joint 3.754545e-04

Joint ci ratio: 2.043102e-01	ci left: 2.976700e-04	ci right 3.662427e-04	k: 367	n:1110000
Cons ci ratio: 5.939616e-03	ci left: 2.809794e-01	ci right 2.826542e-01	k: 312816	n:1110000
KS ci ratio: 1.919271e-01	ci left: 3.396273e-04	ci right 4.125707e-04	k: 416	n:1110000
ZFPM2   1110000 perm   733 sec   (1515 perm/sec)   p_kst 3.747748e-04   p_cons 2.818162e-01   p_joint 3.306306e-04

Joint ci ratio: 2.062824e-01	ci left: 2.890834e-04	ci right 3.564020e-04	k: 360	n:1120000
Cons ci ratio: 5.912808e-03	ci left: 2.809991e-01	ci right 2.826663e-01	k: 315652	n:1120000
KS ci ratio: 1.910131e-01	ci left: 3.399951e-04	ci right 4.126295e-04	k: 420	n:1120000
ZFPM2   1120000 perm   743 sec   (1506 perm/sec)   p_kst 3.750000e-04   p_cons 2.818321e-01   p_joint 3.214286e-04

Joint ci ratio: 1.423330e-01	ci left: 6.230476e-04	ci right 7.193646e-04	k: 757	n:1130000
Cons ci ratio: 5.886630e-03	ci left: 2.809998e-01	ci right 2.826597e-01	k: 318467	n:1130000
KS ci ratio: 1.763305e-01	ci left: 3.986237e-04	ci right 4.765405e-04	k: 493	n:1130000
ZFPM2   1130000 perm   754 sec   (1498 perm/sec)   p_kst 4.362832e-04   p_cons 2.818292e-01   p_joint 6.699115e-04

Joint ci ratio: 1.426161e-01	ci left: 6.150443e-04	ci right 7.103293e-04	k: 754	n:1140000
Cons ci ratio: 5.860707e-03	ci left: 2.810067e-01	ci right 2.826593e-01	k: 321289	n:1140000
KS ci ratio: 1.756210e-01	ci left: 3.984812e-04	ci right 4.760235e-04	k: 497	n:1140000
ZFPM2   1140000 perm   765 sec   (1490 perm/sec)   p_kst 4.359649e-04   p_cons 2.818325e-01   p_joint 6.614035e-04

Joint ci ratio: 1.421463e-01	ci left: 6.138890e-04	ci right 7.086552e-04	k: 759	n:1150000
Cons ci ratio: 5.834623e-03	ci left: 2.810483e-01	ci right 2.826937e-01	k: 324151	n:1150000
KS ci ratio: 1.749199e-01	ci left: 3.983418e-04	ci right 4.755149e-04	k: 501	n:1150000
ZFPM2   1150000 perm   776 sec   (1482 perm/sec)   p_kst 4.356522e-04   p_cons 2.818704e-01   p_joint 6.600000e-04

Joint ci ratio: 1.421467e-01	ci left: 6.085967e-04	ci right 7.025462e-04	k: 759	n:1160000
Cons ci ratio: 5.809515e-03	ci left: 2.810452e-01	ci right 2.826835e-01	k: 326962	n:1160000
KS ci ratio: 1.737127e-01	ci left: 4.006791e-04	ci right 4.777131e-04	k: 508	n:1160000
ZFPM2   1160000 perm   787 sec   (1474 perm/sec)   p_kst 4.379310e-04   p_cons 2.818638e-01   p_joint 6.543103e-04

Joint ci ratio: 1.418672e-01	ci left: 6.058680e-04	ci right 6.991968e-04	k: 762	n:1170000
Cons ci ratio: 5.784215e-03	ci left: 2.810780e-01	ci right 2.827094e-01	k: 329815	n:1170000
KS ci ratio: 1.735426e-01	ci left: 3.980720e-04	ci right 4.745219e-04	k: 509	n:1170000
ZFPM2   1170000 perm   798 sec   (1466 perm/sec)   p_kst 4.350427e-04   p_cons 2.818932e-01   p_joint 6.512821e-04

Joint ci ratio: 1.411292e-01	ci left: 6.072732e-04	ci right 7.002909e-04	k: 770	n:1180000
Cons ci ratio: 5.760268e-03	ci left: 2.810384e-01	ci right 2.826627e-01	k: 332583	n:1180000
KS ci ratio: 1.723636e-01	ci left: 4.003740e-04	ci right 4.766893e-04	k: 516	n:1180000
ZFPM2   1180000 perm   810 sec   (1457 perm/sec)   p_kst 4.372881e-04   p_cons 2.818500e-01   p_joint 6.525424e-04

Joint ci ratio: 1.407646e-01	ci left: 6.054128e-04	ci right 6.978859e-04	k: 774	n:1190000
Cons ci ratio: 5.736306e-03	ci left: 2.810212e-01	ci right 2.826387e-01	k: 335377	n:1190000
KS ci ratio: 1.720313e-01	ci left: 3.986177e-04	ci right 4.744365e-04	k: 518	n:1190000
ZFPM2   1190000 perm   822 sec   (1448 perm/sec)   p_kst 4.352941e-04   p_cons 2.818294e-01   p_joint 6.504202e-04

Joint ci ratio: 1.474877e-01	ci left: 5.449388e-04	ci right 6.325009e-04	k: 705	n:1200000
Cons ci ratio: 5.712146e-03	ci left: 2.810393e-01	ci right 2.826501e-01	k: 338213	n:1200000
KS ci ratio: 1.710453e-01	ci left: 4.000812e-04	ci right 4.756973e-04	k: 524	n:1200000
ZFPM2   1200000 perm   833 sec   (1441 perm/sec)   p_kst 4.366667e-04   p_cons 2.818442e-01   p_joint 5.875000e-04

Joint ci ratio: 1.486513e-01	ci left: 5.316808e-04	ci right 6.178465e-04	k: 694	n:1210000
Cons ci ratio: 5.688661e-03	ci left: 2.810307e-01	ci right 2.826348e-01	k: 341017	n:1210000
KS ci ratio: 1.699161e-01	ci left: 4.023131e-04	ci right 4.777976e-04	k: 531	n:1210000
ZFPM2   1210000 perm   844 sec   (1433 perm/sec)   p_kst 4.388430e-04   p_cons 2.818322e-01   p_joint 5.735537e-04

Joint ci ratio: 1.892260e-01	ci left: 3.183716e-04	ci right 3.856770e-04	k: 428	n:1220000
Cons ci ratio: 5.664626e-03	ci left: 2.810821e-01	ci right 2.826796e-01	k: 343894	n:1220000
KS ci ratio: 1.730358e-01	ci left: 3.841097e-04	ci right 4.576402e-04	k: 512	n:1220000
ZFPM2   1220000 perm   856 sec   (1425 perm/sec)   p_kst 4.196721e-04   p_cons 2.818803e-01   p_joint 3.508197e-04

Joint ci ratio: 1.885679e-01	ci left: 3.181069e-04	ci right 3.850956e-04	k: 431	n:1230000
Cons ci ratio: 5.641108e-03	ci left: 2.811172e-01	ci right 2.827083e-01	k: 346752	n:1230000
KS ci ratio: 1.721986e-01	ci left: 3.848763e-04	ci right 4.581600e-04	k: 517	n:1230000
ZFPM2   1230000 perm   868 sec   (1417 perm/sec)   p_kst 4.203252e-04   p_cons 2.819122e-01   p_joint 3.504065e-04

Joint ci ratio: 1.879166e-01	ci left: 3.178469e-04	ci right 3.845232e-04	k: 434	n:1240000
Cons ci ratio: 5.617948e-03	ci left: 2.811469e-01	ci right 2.827316e-01	k: 349604	n:1240000
KS ci ratio: 1.713734e-01	ci left: 3.856314e-04	ci right 4.586706e-04	k: 522	n:1240000
ZFPM2   1240000 perm   880 sec   (1409 perm/sec)   p_kst 4.209677e-04   p_cons 2.819387e-01   p_joint 3.500000e-04

Joint ci ratio: 1.868457e-01	ci left: 3.191165e-04	ci right 3.856344e-04	k: 439	n:1250000
Cons ci ratio: 5.595911e-03	ci left: 2.811154e-01	ci right 2.826936e-01	k: 352380	n:1250000
KS ci ratio: 1.710468e-01	ci left: 3.840777e-04	ci right 4.566698e-04	k: 524	n:1250000
ZFPM2   1250000 perm   892 sec   (1401 perm/sec)   p_kst 4.192000e-04   p_cons 2.819040e-01   p_joint 3.512000e-04

Joint ci ratio: 1.857929e-01	ci left: 3.203670e-04	ci right 3.867270e-04	k: 444	n:1260000
Cons ci ratio: 5.572962e-03	ci left: 2.811692e-01	ci right 2.827413e-01	k: 355263	n:1260000
KS ci ratio: 1.697581e-01	ci left: 3.871080e-04	ci right 4.596651e-04	k: 532	n:1260000
ZFPM2   1260000 perm   904 sec   (1394 perm/sec)   p_kst 4.222222e-04   p_cons 2.819548e-01   p_joint 3.523810e-04

Joint ci ratio: 1.853769e-01	ci left: 3.193461e-04	ci right 3.853298e-04	k: 446	n:1270000
Cons ci ratio: 5.550639e-03	ci left: 2.811971e-01	ci right 2.827630e-01	k: 358114	n:1270000
KS ci ratio: 1.692824e-01	ci left: 3.863218e-04	ci right 4.585080e-04	k: 535	n:1270000
ZFPM2   1270000 perm   916 sec   (1386 perm/sec)   p_kst 4.212598e-04   p_cons 2.819795e-01   p_joint 3.511811e-04

Joint ci ratio: 1.853772e-01	ci left: 3.168512e-04	ci right 3.823194e-04	k: 446	n:1280000
Cons ci ratio: 5.528816e-03	ci left: 2.812073e-01	ci right 2.827671e-01	k: 360943	n:1280000
KS ci ratio: 1.686543e-01	ci left: 3.862966e-04	ci right 4.581830e-04	k: 539	n:1280000
ZFPM2   1280000 perm   928 sec   (1379 perm/sec)   p_kst 4.210938e-04   p_cons 2.819867e-01   p_joint 3.484375e-04

Joint ci ratio: 1.843489e-01	ci left: 3.180916e-04	ci right 3.834108e-04	k: 451	n:1290000
Cons ci ratio: 5.507185e-03	ci left: 2.812221e-01	ci right 2.827758e-01	k: 363778	n:1290000
KS ci ratio: 1.677249e-01	ci left: 3.877574e-04	ci right 4.594779e-04	k: 545	n:1290000
ZFPM2   1290000 perm   940 sec   (1372 perm/sec)   p_kst 4.224806e-04   p_cons 2.819984e-01   p_joint 3.496124e-04

Joint ci ratio: 1.843492e-01	ci left: 3.156447e-04	ci right 3.804616e-04	k: 451	n:1300000
Cons ci ratio: 5.486025e-03	ci left: 2.812204e-01	ci right 2.827682e-01	k: 366592	n:1300000
KS ci ratio: 1.669622e-01	ci left: 3.884598e-04	ci right 4.599505e-04	k: 550	n:1300000
ZFPM2   1300000 perm   953 sec   (1365 perm/sec)   p_kst 4.230769e-04   p_cons 2.819938e-01   p_joint 3.469231e-04

Joint ci ratio: 1.839428e-01	ci left: 3.146915e-04	ci right 3.791543e-04	k: 453	n:1310000
Cons ci ratio: 5.465262e-03	ci left: 2.812074e-01	ci right 2.827493e-01	k: 369391	n:1310000
KS ci ratio: 1.663594e-01	ci left: 3.884205e-04	ci right 4.596201e-04	k: 554	n:1310000
ZFPM2   1310000 perm   965 sec   (1358 perm/sec)   p_kst 4.229008e-04   p_cons 2.819779e-01   p_joint 3.458015e-04

Joint ci ratio: 1.825406e-01	ci left: 3.173673e-04	ci right 3.818279e-04	k: 460	n:1320000
Cons ci ratio: 5.444682e-03	ci left: 2.811984e-01	ci right 2.827344e-01	k: 372195	n:1320000
KS ci ratio: 1.654673e-01	ci left: 3.898347e-04	ci right 4.608721e-04	k: 560	n:1320000
ZFPM2   1320000 perm   977 sec   (1351 perm/sec)   p_kst 4.242424e-04   p_cons 2.819659e-01   p_joint 3.484848e-04

Joint ci ratio: 1.817538e-01	ci left: 3.178515e-04	ci right 3.821015e-04	k: 464	n:1330000
Cons ci ratio: 5.424060e-03	ci left: 2.812098e-01	ci right 2.827400e-01	k: 375026	n:1330000
KS ci ratio: 1.650267e-01	ci left: 3.890659e-04	ci right 4.597558e-04	k: 563	n:1330000
ZFPM2   1330000 perm   990 sec   (1344 perm/sec)   p_kst 4.233083e-04   p_cons 2.819744e-01   p_joint 3.488722e-04

Joint ci ratio: 1.412263e-01	ci left: 5.340416e-04	ci right 6.159032e-04	k: 769	n:1340000
Cons ci ratio: 5.402556e-03	ci left: 2.813046e-01	ci right 2.828292e-01	k: 377969	n:1340000
KS ci ratio: 1.613483e-01	ci left: 4.047734e-04	ci right 4.765190e-04	k: 589	n:1340000
ZFPM2   1340000 perm   1002 sec   (1337 perm/sec)   p_kst 4.395522e-04   p_cons 2.820664e-01   p_joint 5.738806e-04

Joint ci ratio: 1.407701e-01	ci left: 5.336588e-04	ci right 6.151753e-04	k: 774	n:1350000
Cons ci ratio: 5.381906e-03	ci left: 2.813528e-01	ci right 2.828718e-01	k: 380851	n:1350000
KS ci ratio: 1.609397e-01	ci left: 4.039077e-04	ci right 4.753010e-04	k: 592	n:1350000
ZFPM2   1350000 perm   1015 sec   (1331 perm/sec)   p_kst 4.385185e-04   p_cons 2.821119e-01   p_joint 5.733333e-04

Joint ci ratio: 1.404986e-01	ci left: 5.318631e-04	ci right 6.129354e-04	k: 777	n:1360000
Cons ci ratio: 5.362503e-03	ci left: 2.813239e-01	ci right 2.828373e-01	k: 383629	n:1360000
KS ci ratio: 1.603996e-01	ci left: 4.037607e-04	ci right 4.748655e-04	k: 596	n:1360000
ZFPM2   1360000 perm   1027 sec   (1324 perm/sec)   p_kst 4.382353e-04   p_cons 2.820801e-01   p_joint 5.713235e-04

Joint ci ratio: 1.495198e-01	ci left: 4.639639e-04	ci right 5.396337e-04	k: 686	n:1370000
Cons ci ratio: 5.342923e-03	ci left: 2.813247e-01	ci right 2.828325e-01	k: 386447	n:1370000
KS ci ratio: 1.590726e-01	ci left: 4.078211e-04	ci right 4.789901e-04	k: 606	n:1370000
ZFPM2   1370000 perm   1040 sec   (1318 perm/sec)   p_kst 4.423358e-04   p_cons 2.820781e-01   p_joint 5.007299e-04

Joint ci ratio: 1.493028e-01	ci left: 4.619969e-04	ci right 5.372267e-04	k: 688	n:1380000
Cons ci ratio: 5.323708e-03	ci left: 2.813138e-01	ci right 2.828161e-01	k: 389249	n:1380000
KS ci ratio: 1.586810e-01	ci left: 4.069533e-04	ci right 4.777794e-04	k: 609	n:1380000
ZFPM2   1380000 perm   1052 sec   (1311 perm/sec)   p_kst 4.413043e-04   p_cons 2.820645e-01   p_joint 4.985507e-04

Joint ci ratio: 1.491948e-01	ci left: 4.593656e-04	ci right 5.341081e-04	k: 689	n:1390000
Cons ci ratio: 5.303955e-03	ci left: 2.813599e-01	ci right 2.828569e-01	k: 392130	n:1390000
KS ci ratio: 1.582923e-01	ci left: 4.060983e-04	ci right 4.765860e-04	k: 612	n:1390000
ZFPM2   1390000 perm   1065 sec   (1305 perm/sec)   p_kst 4.402878e-04   p_cons 2.821079e-01   p_joint 4.956835e-04

Joint ci ratio: 1.484436e-01	ci left: 4.608983e-04	ci right 5.354791e-04	k: 696	n:1400000
Cons ci ratio: 5.284159e-03	ci left: 2.814253e-01	ci right 2.829170e-01	k: 395039	n:1400000
KS ci ratio: 1.579065e-01	ci left: 4.052556e-04	ci right 4.754094e-04	k: 615	n:1400000
ZFPM2   1400000 perm   1078 sec   (1299 perm/sec)   p_kst 4.392857e-04   p_cons 2.821707e-01   p_joint 4.971429e-04

Joint ci ratio: 1.475988e-01	ci left: 4.630932e-04	ci right 5.375650e-04	k: 704	n:1410000
Cons ci ratio: 5.265588e-03	ci left: 2.814126e-01	ci right 2.828990e-01	k: 397839	n:1410000
KS ci ratio: 1.573963e-01	ci left: 4.051065e-04	ci right 4.749864e-04	k: 619	n:1410000
ZFPM2   1410000 perm   1091 sec   (1292 perm/sec)   p_kst 4.390071e-04   p_cons 2.821553e-01   p_joint 4.992908e-04

Joint ci ratio: 1.466654e-01	ci left: 4.659367e-04	ci right 5.403505e-04	k: 713	n:1420000
Cons ci ratio: 5.247247e-03	ci left: 2.813972e-01	ci right 2.828783e-01	k: 400635	n:1420000
KS ci ratio: 1.567654e-01	ci left: 4.056363e-04	ci right 4.753008e-04	k: 624	n:1420000
ZFPM2   1420000 perm   1104 sec   (1286 perm/sec)   p_kst 4.394366e-04   p_cons 2.821373e-01   p_joint 5.021127e-04

Joint ci ratio: 1.482317e-01	ci left: 4.525757e-04	ci right 5.256959e-04	k: 698	n:1430000
Cons ci ratio: 5.228971e-03	ci left: 2.813919e-01	ci right 2.828678e-01	k: 403445	n:1430000
KS ci ratio: 1.566404e-01	ci left: 4.034715e-04	ci right 4.727038e-04	k: 625	n:1430000
ZFPM2   1430000 perm   1117 sec   (1280 perm/sec)   p_kst 4.370629e-04   p_cons 2.821294e-01   p_joint 4.881119e-04

Joint ci ratio: 1.479147e-01	ci left: 4.514389e-04	ci right 5.242057e-04	k: 701	n:1440000
Cons ci ratio: 5.210607e-03	ci left: 2.814081e-01	ci right 2.828789e-01	k: 406286	n:1440000
KS ci ratio: 1.561423e-01	ci left: 4.033387e-04	ci right 4.723075e-04	k: 629	n:1440000
ZFPM2   1440000 perm   1130 sec   (1274 perm/sec)   p_kst 4.368056e-04   p_cons 2.821431e-01   p_joint 4.868056e-04

Joint ci ratio: 1.477046e-01	ci left: 4.496538e-04	ci right 5.220208e-04	k: 703	n:1450000
Cons ci ratio: 5.192630e-03	ci left: 2.814090e-01	ci right 2.828747e-01	k: 409105	n:1450000
KS ci ratio: 1.560187e-01	ci left: 4.012198e-04	ci right 4.697668e-04	k: 630	n:1450000
ZFPM2   1450000 perm   1143 sec   (1268 perm/sec)   p_kst 4.344828e-04   p_cons 2.821414e-01   p_joint 4.848276e-04

Joint ci ratio: 1.478100e-01	ci left: 4.459143e-04	ci right 5.177352e-04	k: 702	n:1460000
Cons ci ratio: 5.175004e-03	ci left: 2.813968e-01	ci right 2.828575e-01	k: 411905	n:1460000
KS ci ratio: 1.560190e-01	ci left: 3.984716e-04	ci right 4.665493e-04	k: 630	n:1460000
ZFPM2   1460000 perm   1157 sec   (1262 perm/sec)   p_kst 4.315068e-04   p_cons 2.821267e-01   p_joint 4.808219e-04

Joint ci ratio: 1.470794e-01	ci left: 4.474671e-04	ci right 5.191506e-04	k: 709	n:1470000
Cons ci ratio: 5.157322e-03	ci left: 2.814032e-01	ci right 2.828589e-01	k: 414732	n:1470000
KS ci ratio: 1.554044e-01	ci left: 3.990298e-04	ci right 4.669093e-04	k: 635	n:1470000
ZFPM2   1470000 perm   1170 sec   (1256 perm/sec)   p_kst 4.319728e-04   p_cons 2.821306e-01   p_joint 4.823129e-04

Joint ci ratio: 1.468728e-01	ci left: 4.457453e-04	ci right 5.170439e-04	k: 711	n:1480000
Cons ci ratio: 5.140301e-03	ci left: 2.813717e-01	ci right 2.828224e-01	k: 417503	n:1480000
KS ci ratio: 1.551608e-01	ci left: 3.976325e-04	ci right 4.651583e-04	k: 637	n:1480000
ZFPM2   1480000 perm   1183 sec   (1251 perm/sec)   p_kst 4.304054e-04   p_cons 2.820966e-01   p_joint 4.804054e-04

Joint ci ratio: 1.466671e-01	ci left: 4.440467e-04	ci right 5.149654e-04	k: 713	n:1490000
Cons ci ratio: 5.123158e-03	ci left: 2.813634e-01	ci right 2.828092e-01	k: 420308	n:1490000
KS ci ratio: 1.549183e-01	ci left: 3.962540e-04	ci right 4.634308e-04	k: 639	n:1490000
ZFPM2   1490000 perm   1197 sec   (1245 perm/sec)   p_kst 4.288591e-04   p_cons 2.820859e-01   p_joint 4.785235e-04

Joint ci ratio: 1.459533e-01	ci left: 4.455823e-04	ci right 5.163696e-04	k: 720	n:1500000
Cons ci ratio: 5.106261e-03	ci left: 2.813493e-01	ci right 2.827902e-01	k: 423104	n:1500000
KS ci ratio: 1.544364e-01	ci left: 3.961757e-04	ci right 4.631111e-04	k: 643	n:1500000
ZFPM2   1500000 perm   1211 sec   (1239 perm/sec)   p_kst 4.286667e-04   p_cons 2.820693e-01   p_joint 4.800000e-04

Joint ci ratio: 1.453497e-01	ci left: 4.464601e-04	ci right 5.170681e-04	k: 726	n:1510000
Cons ci ratio: 5.089372e-03	ci left: 2.813479e-01	ci right 2.827841e-01	k: 425919	n:1510000
KS ci ratio: 1.538403e-01	ci left: 3.967356e-04	ci right 4.634830e-04	k: 648	n:1510000
ZFPM2   1510000 perm   1225 sec   (1233 perm/sec)   p_kst 4.291391e-04   p_cons 2.820656e-01   p_joint 4.807947e-04

Joint ci ratio: 1.447535e-01	ci left: 4.473270e-04	ci right 5.177569e-04	k: 732	n:1520000
Cons ci ratio: 5.072782e-03	ci left: 2.813360e-01	ci right 2.827674e-01	k: 428718	n:1520000
KS ci ratio: 1.531340e-01	ci left: 3.979213e-04	ci right 4.645326e-04	k: 654	n:1520000
ZFPM2   1520000 perm   1238 sec   (1227 perm/sec)   p_kst 4.302632e-04   p_cons 2.820513e-01   p_joint 4.815789e-04

Joint ci ratio: 1.455506e-01	ci left: 4.393643e-04	ci right 5.089545e-04	k: 724	n:1530000
Cons ci ratio: 5.055259e-03	ci left: 2.814118e-01	ci right 2.828387e-01	k: 431651	n:1530000
KS ci ratio: 1.529009e-01	ci left: 3.965776e-04	ci right 4.628537e-04	k: 656	n:1530000
ZFPM2   1530000 perm   1252 sec   (1222 perm/sec)   p_kst 4.287582e-04   p_cons 2.821248e-01   p_joint 4.732026e-04

Joint ci ratio: 1.447540e-01	ci left: 4.415175e-04	ci right 5.110329e-04	k: 732	n:1540000
Cons ci ratio: 5.038757e-03	ci left: 2.814192e-01	ci right 2.828414e-01	k: 434480	n:1540000
KS ci ratio: 1.519782e-01	ci left: 3.989991e-04	ci right 4.652409e-04	k: 664	n:1540000
ZFPM2   1540000 perm   1266 sec   (1216 perm/sec)   p_kst 4.311688e-04   p_cons 2.821299e-01   p_joint 4.753247e-04

Joint ci ratio: 1.440676e-01	ci left: 4.430219e-04	ci right 5.124151e-04	k: 739	n:1550000
Cons ci ratio: 5.022343e-03	ci left: 2.814322e-01	ci right 2.828499e-01	k: 437318	n:1550000
KS ci ratio: 1.512971e-01	ci left: 4.001491e-04	ci right 4.662570e-04	k: 670	n:1550000
ZFPM2   1550000 perm   1280 sec   (1211 perm/sec)   p_kst 4.322581e-04   p_cons 2.821406e-01   p_joint 4.767742e-04

Joint ci ratio: 1.439705e-01	ci left: 4.407999e-04	ci right 5.097945e-04	k: 740	n:1560000
Cons ci ratio: 5.005613e-03	ci left: 2.814836e-01	ci right 2.828967e-01	k: 440216	n:1560000
KS ci ratio: 1.512973e-01	ci left: 3.975840e-04	ci right 4.632682e-04	k: 670	n:1560000
ZFPM2   1560000 perm   1294 sec   (1206 perm/sec)   p_kst 4.294872e-04   p_cons 2.821897e-01   p_joint 4.743590e-04

Joint ci ratio: 1.457528e-01	ci left: 4.269426e-04	ci right 4.946675e-04	k: 722	n:1570000
Cons ci ratio: 4.989983e-03	ci left: 2.814585e-01	ci right 2.828671e-01	k: 442995	n:1570000
KS ci ratio: 1.508484e-01	ci left: 3.975030e-04	ci right 4.629615e-04	k: 674	n:1570000
ZFPM2   1570000 perm   1308 sec   (1201 perm/sec)   p_kst 4.292994e-04   p_cons 2.821624e-01   p_joint 4.598726e-04

Joint ci ratio: 1.450521e-01	ci left: 4.285097e-04	ci right 4.961281e-04	k: 729	n:1580000
Cons ci ratio: 4.973433e-03	ci left: 2.815204e-01	ci right 2.829247e-01	k: 445911	n:1580000
KS ci ratio: 1.502927e-01	ci left: 3.980325e-04	ci right 4.633150e-04	k: 679	n:1580000
ZFPM2   1580000 perm   1322 sec   (1195 perm/sec)   p_kst 4.297468e-04   p_cons 2.822222e-01   p_joint 4.613924e-04

Joint ci ratio: 1.441660e-01	ci left: 4.312703e-04	ci right 4.988728e-04	k: 738	n:1590000
Cons ci ratio: 4.958155e-03	ci left: 2.814911e-01	ci right 2.828908e-01	k: 448683	n:1590000
KS ci ratio: 1.494162e-01	ci left: 4.003720e-04	ci right 4.656210e-04	k: 687	n:1590000
ZFPM2   1590000 perm   1336 sec   (1190 perm/sec)   p_kst 4.320755e-04   p_cons 2.821906e-01   p_joint 4.641509e-04

Joint ci ratio: 1.435842e-01	ci left: 4.321899e-04	ci right 4.996397e-04	k: 744	n:1600000
Cons ci ratio: 4.942385e-03	ci left: 2.815139e-01	ci right 2.829093e-01	k: 451538	n:1600000
KS ci ratio: 1.489838e-01	ci left: 4.002764e-04	ci right 4.653042e-04	k: 691	n:1600000
ZFPM2   1600000 perm   1350 sec   (1185 perm/sec)   p_kst 4.318750e-04   p_cons 2.822113e-01   p_joint 4.650000e-04

Joint ci ratio: 1.431048e-01	ci left: 4.324997e-04	ci right 4.997532e-04	k: 749	n:1610000
Cons ci ratio: 4.926461e-03	ci left: 2.815614e-01	ci right 2.829525e-01	k: 454433	n:1610000
KS ci ratio: 1.483420e-01	ci left: 4.013783e-04	ci right 4.662793e-04	k: 697	n:1610000
ZFPM2   1610000 perm   1364 sec   (1180 perm/sec)   p_kst 4.329193e-04   p_cons 2.822565e-01   p_joint 4.652174e-04

Joint ci ratio: 1.427247e-01	ci left: 4.322108e-04	ci right 4.992257e-04	k: 753	n:1620000
Cons ci ratio: 4.911267e-03	ci left: 2.815607e-01	ci right 2.829475e-01	k: 457251	n:1620000
KS ci ratio: 1.477084e-01	ci left: 4.024672e-04	ci right 4.672418e-04	k: 703	n:1620000
ZFPM2   1620000 perm   1378 sec   (1176 perm/sec)   p_kst 4.339506e-04   p_cons 2.822537e-01   p_joint 4.648148e-04

Joint ci ratio: 1.423477e-01	ci left: 4.319256e-04	ci right 4.987044e-04	k: 757	n:1630000
Cons ci ratio: 4.896108e-03	ci left: 2.815686e-01	ci right 2.829512e-01	k: 460083	n:1630000
KS ci ratio: 1.471866e-01	ci left: 4.029524e-04	ci right 4.675558e-04	k: 708	n:1630000
ZFPM2   1630000 perm   1392 sec   (1171 perm/sec)   p_kst 4.343558e-04   p_cons 2.822595e-01   p_joint 4.644172e-04

Joint ci ratio: 1.417875e-01	ci left: 4.328205e-04	ci right 4.994520e-04	k: 763	n:1640000
Cons ci ratio: 4.880972e-03	ci left: 2.815862e-01	ci right 2.829646e-01	k: 462931	n:1640000
KS ci ratio: 1.467732e-01	ci left: 4.028447e-04	ci right 4.672335e-04	k: 712	n:1640000
ZFPM2   1640000 perm   1407 sec   (1166 perm/sec)   p_kst 4.341463e-04   p_cons 2.822750e-01   p_joint 4.652439e-04

Joint ci ratio: 1.449543e-01	ci left: 4.109143e-04	ci right 4.757086e-04	k: 730	n:1650000
Cons ci ratio: 4.866535e-03	ci left: 2.815570e-01	ci right 2.829311e-01	k: 465702	n:1650000
KS ci ratio: 1.467734e-01	ci left: 4.004032e-04	ci right 4.644019e-04	k: 712	n:1650000
ZFPM2   1650000 perm   1421 sec   (1161 perm/sec)   p_kst 4.315152e-04   p_cons 2.822436e-01   p_joint 4.424242e-04

Joint ci ratio: 1.441674e-01	ci left: 4.130839e-04	ci right 4.778363e-04	k: 738	n:1660000
Cons ci ratio: 4.851310e-03	ci left: 2.816045e-01	ci right 2.829746e-01	k: 468600	n:1660000
KS ci ratio: 1.461596e-01	ci left: 4.014731e-04	ci right 4.653511e-04	k: 718	n:1660000
ZFPM2   1660000 perm   1436 sec   (1156 perm/sec)   p_kst 4.325301e-04   p_cons 2.822892e-01   p_joint 4.445783e-04

Joint ci ratio: 1.435856e-01	ci left: 4.140739e-04	ci right 4.786971e-04	k: 744	n:1670000
Cons ci ratio: 4.836934e-03	ci left: 2.815923e-01	ci right 2.829582e-01	k: 471399	n:1670000
KS ci ratio: 1.460582e-01	ci left: 3.996460e-04	ci right 4.631853e-04	k: 719	n:1670000
ZFPM2   1670000 perm   1451 sec   (1151 perm/sec)   p_kst 4.305389e-04   p_cons 2.822749e-01   p_joint 4.455090e-04

Joint ci ratio: 1.522101e-01	ci left: 3.646035e-04	ci right 4.252357e-04	k: 662	n:1680000
Cons ci ratio: 4.822883e-03	ci left: 2.815635e-01	ci right 2.829253e-01	k: 474170	n:1680000
KS ci ratio: 1.456542e-01	ci left: 3.995612e-04	ci right 4.628960e-04	k: 723	n:1680000
ZFPM2   1680000 perm   1466 sec   (1146 perm/sec)   p_kst 4.303571e-04   p_cons 2.822440e-01   p_joint 3.940476e-04

Joint ci ratio: 1.520956e-01	ci left: 3.630153e-04	ci right 4.233337e-04	k: 663	n:1690000
Cons ci ratio: 4.808140e-03	ci left: 2.816037e-01	ci right 2.829615e-01	k: 477057	n:1690000
KS ci ratio: 1.456544e-01	ci left: 3.971969e-04	ci right 4.601570e-04	k: 723	n:1690000
ZFPM2   1690000 perm   1481 sec   (1141 perm/sec)   p_kst 4.278107e-04   p_cons 2.822822e-01   p_joint 3.923077e-04

Joint ci ratio: 1.531375e-01	ci left: 3.557879e-04	ci right 4.153475e-04	k: 654	n:1700000
Cons ci ratio: 4.793761e-03	ci left: 2.816240e-01	ci right 2.829779e-01	k: 479911	n:1700000
KS ci ratio: 1.453536e-01	ci left: 3.965609e-04	ci right 4.592791e-04	k: 726	n:1700000
ZFPM2   1700000 perm   1496 sec   (1136 perm/sec)   p_kst 4.270588e-04   p_cons 2.823006e-01   p_joint 3.847059e-04

Joint ci ratio: 1.606763e-01	ci left: 3.199959e-04	ci right 3.764557e-04	k: 594	n:1710000
Cons ci ratio: 4.779613e-03	ci left: 2.816354e-01	ci right 2.829853e-01	k: 482750	n:1710000
KS ci ratio: 1.450547e-01	ci left: 3.959325e-04	ci right 4.584114e-04	k: 729	n:1710000
ZFPM2   1710000 perm   1511 sec   (1132 perm/sec)   p_kst 4.263158e-04   p_cons 2.823099e-01   p_joint 3.473684e-04

Joint ci ratio: 1.608117e-01	ci left: 3.175774e-04	ci right 3.736623e-04	k: 593	n:1720000
Cons ci ratio: 4.765679e-03	ci left: 2.816390e-01	ci right 2.829850e-01	k: 485576	n:1720000
KS ci ratio: 1.443641e-01	ci left: 3.975530e-04	ci right 4.599632e-04	k: 736	n:1720000
ZFPM2   1720000 perm   1526 sec   (1127 perm/sec)   p_kst 4.279070e-04   p_cons 2.823116e-01   p_joint 3.447674e-04

Joint ci ratio: 1.624618e-01	ci left: 3.090857e-04	ci right 3.642858e-04	k: 581	n:1730000
Cons ci ratio: 4.751913e-03	ci left: 2.816386e-01	ci right 2.829806e-01	k: 488395	n:1730000
KS ci ratio: 1.440712e-01	ci left: 3.969265e-04	ci right 4.591011e-04	k: 739	n:1730000
ZFPM2   1730000 perm   1541 sec   (1122 perm/sec)   p_kst 4.271676e-04   p_cons 2.823092e-01   p_joint 3.358382e-04

Joint ci ratio: 1.630234e-01	ci left: 3.051041e-04	ci right 3.597999e-04	k: 577	n:1740000
Cons ci ratio: 4.738132e-03	ci left: 2.816496e-01	ci right 2.829879e-01	k: 491234	n:1740000
KS ci ratio: 1.436834e-01	ci left: 3.968614e-04	ci right 4.588441e-04	k: 743	n:1740000
ZFPM2   1740000 perm   1557 sec   (1118 perm/sec)   p_kst 4.270115e-04   p_cons 2.823184e-01   p_joint 3.316092e-04

Joint ci ratio: 1.623227e-01	ci left: 3.061015e-04	ci right 3.607172e-04	k: 582	n:1750000
Cons ci ratio: 4.724216e-03	ci left: 2.816823e-01	ci right 2.830167e-01	k: 494111	n:1750000
KS ci ratio: 1.432030e-01	ci left: 3.973482e-04	ci right 4.591817e-04	k: 748	n:1750000
ZFPM2   1750000 perm   1573 sec   (1113 perm/sec)   p_kst 4.274286e-04   p_cons 2.823491e-01   p_joint 3.325714e-04

Joint ci ratio: 1.619067e-01	ci left: 3.059977e-04	ci right 3.604413e-04	k: 585	n:1760000
Cons ci ratio: 4.710898e-03	ci left: 2.816737e-01	ci right 2.830043e-01	k: 496916	n:1760000
KS ci ratio: 1.430123e-01	ci left: 3.961862e-04	ci right 4.577498e-04	k: 750	n:1760000
ZFPM2   1760000 perm   1588 sec   (1108 perm/sec)   p_kst 4.261364e-04   p_cons 2.823386e-01   p_joint 3.323864e-04

Joint ci ratio: 1.613569e-01	ci left: 3.064374e-04	ci right 3.607561e-04	k: 589	n:1770000
Cons ci ratio: 4.697601e-03	ci left: 2.816731e-01	ci right 2.829999e-01	k: 499735	n:1770000
KS ci ratio: 1.427275e-01	ci left: 3.955822e-04	ci right 4.569191e-04	k: 753	n:1770000
ZFPM2   1770000 perm   1604 sec   (1104 perm/sec)   p_kst 4.254237e-04   p_cons 2.823362e-01   p_joint 3.327684e-04

Joint ci ratio: 1.610842e-01	ci left: 3.057940e-04	ci right 3.598983e-04	k: 591	n:1780000
Cons ci ratio: 4.683876e-03	ci left: 2.817191e-01	ci right 2.830423e-01	k: 502637	n:1780000
KS ci ratio: 1.425387e-01	ci left: 3.944433e-04	ci right 4.555158e-04	k: 755	n:1780000
ZFPM2   1780000 perm   1620 sec   (1099 perm/sec)   p_kst 4.241573e-04   p_cons 2.823803e-01   p_joint 3.320225e-04

Joint ci ratio: 1.610843e-01	ci left: 3.040857e-04	ci right 3.578878e-04	k: 591	n:1790000
Cons ci ratio: 4.671108e-03	ci left: 2.816920e-01	ci right 2.830115e-01	k: 505409	n:1790000
KS ci ratio: 1.422568e-01	ci left: 3.938560e-04	ci right 4.547067e-04	k: 758	n:1790000
ZFPM2   1790000 perm   1635 sec   (1095 perm/sec)   p_kst 4.234637e-04   p_cons 2.823514e-01   p_joint 3.301676e-04

Joint ci ratio: 1.626027e-01	ci left: 2.965326e-04	ci right 3.495412e-04	k: 580	n:1800000
Cons ci ratio: 4.658220e-03	ci left: 2.816847e-01	ci right 2.830004e-01	k: 508216	n:1800000
KS ci ratio: 1.419765e-01	ci left: 3.932753e-04	ci right 4.539065e-04	k: 761	n:1800000
ZFPM2   1800000 perm   1651 sec   (1090 perm/sec)   p_kst 4.227778e-04   p_cons 2.823422e-01   p_joint 3.222222e-04

Joint ci ratio: 1.626029e-01	ci left: 2.948943e-04	ci right 3.476101e-04	k: 580	n:1810000
Cons ci ratio: 4.645419e-03	ci left: 2.816791e-01	ci right 2.829912e-01	k: 511026	n:1810000
KS ci ratio: 1.416979e-01	ci left: 3.927011e-04	ci right 4.531149e-04	k: 764	n:1810000
ZFPM2   1810000 perm   1667 sec   (1086 perm/sec)   p_kst 4.220994e-04   p_cons 2.823348e-01   p_joint 3.204420e-04

Joint ci ratio: 1.623238e-01	ci left: 2.943282e-04	ci right 3.468437e-04	k: 582	n:1820000
Cons ci ratio: 4.632729e-03	ci left: 2.816730e-01	ci right 2.829815e-01	k: 513835	n:1820000
KS ci ratio: 1.412371e-01	ci left: 3.931935e-04	ci right 4.534697e-04	k: 769	n:1820000
ZFPM2   1820000 perm   1683 sec   (1081 perm/sec)   p_kst 4.225275e-04   p_cons 2.823269e-01   p_joint 3.197802e-04

Joint ci ratio: 1.620461e-01	ci left: 2.937684e-04	ci right 3.460856e-04	k: 584	n:1830000
Cons ci ratio: 4.619857e-03	ci left: 2.816921e-01	ci right 2.829971e-01	k: 516690	n:1830000
KS ci ratio: 1.407807e-01	ci left: 3.936807e-04	ci right 4.538203e-04	k: 774	n:1830000
ZFPM2   1830000 perm   1699 sec   (1077 perm/sec)   p_kst 4.229508e-04   p_cons 2.823443e-01   p_joint 3.191257e-04

Joint ci ratio: 1.624635e-01	ci left: 2.906075e-04	ci right 3.425081e-04	k: 581	n:1840000
Cons ci ratio: 4.606232e-03	ci left: 2.817866e-01	ci right 2.830880e-01	k: 519684	n:1840000
KS ci ratio: 1.403287e-01	ci left: 3.941630e-04	ci right 4.541668e-04	k: 779	n:1840000
ZFPM2   1840000 perm   1715 sec   (1073 perm/sec)   p_kst 4.233696e-04   p_cons 2.824370e-01   p_joint 3.157609e-04

Joint ci ratio: 1.616323e-01	ci left: 2.921484e-04	ci right 3.440314e-04	k: 587	n:1850000
Cons ci ratio: 4.593744e-03	ci left: 2.817903e-01	ci right 2.830882e-01	k: 522512	n:1850000
KS ci ratio: 1.397920e-01	ci left: 3.951620e-04	ci right 4.550686e-04	k: 785	n:1850000
ZFPM2   1850000 perm   1731 sec   (1068 perm/sec)   p_kst 4.243243e-04   p_cons 2.824389e-01   p_joint 3.172973e-04

Joint ci ratio: 1.609494e-01	ci left: 2.931574e-04	ci right 3.449783e-04	k: 592	n:1860000
Cons ci ratio: 4.581411e-03	ci left: 2.817891e-01	ci right 2.830836e-01	k: 525331	n:1860000
KS ci ratio: 1.395261e-01	ci left: 3.945940e-04	ci right 4.542912e-04	k: 788	n:1860000
ZFPM2   1860000 perm   1748 sec   (1064 perm/sec)   p_kst 4.236559e-04   p_cons 2.824360e-01   p_joint 3.182796e-04

Joint ci ratio: 1.631665e-01	ci left: 2.833805e-04	ci right 3.342308e-04	k: 576	n:1870000
Cons ci ratio: 4.569443e-03	ci left: 2.817645e-01	ci right 2.830554e-01	k: 528106	n:1870000
KS ci ratio: 1.390860e-01	ci left: 3.950645e-04	ci right 4.546288e-04	k: 793	n:1870000
ZFPM2   1870000 perm   1764 sec   (1060 perm/sec)   p_kst 4.240642e-04   p_cons 2.824096e-01   p_joint 3.080214e-04

Joint ci ratio: 1.630254e-01	ci left: 2.823833e-04	ci right 3.330066e-04	k: 577	n:1880000
Cons ci ratio: 4.557525e-03	ci left: 2.817438e-01	ci right 2.830313e-01	k: 530888	n:1880000
KS ci ratio: 1.388241e-01	ci left: 3.945033e-04	ci right 4.538618e-04	k: 796	n:1880000
ZFPM2   1880000 perm   1780 sec   (1056 perm/sec)   p_kst 4.234043e-04   p_cons 2.823872e-01   p_joint 3.069149e-04

Joint ci ratio: 1.630255e-01	ci left: 2.808892e-04	ci right 3.312447e-04	k: 577	n:1890000
Cons ci ratio: 4.545677e-03	ci left: 2.817255e-01	ci right 2.830096e-01	k: 533674	n:1890000
KS ci ratio: 1.385636e-01	ci left: 3.939482e-04	ci right 4.531027e-04	k: 799	n:1890000
ZFPM2   1890000 perm   1797 sec   (1052 perm/sec)   p_kst 4.227513e-04   p_cons 2.823672e-01   p_joint 3.052910e-04

Joint ci ratio: 1.627443e-01	ci left: 2.804205e-04	ci right 3.305968e-04	k: 579	n:1900000
Cons ci ratio: 4.533697e-03	ci left: 2.817274e-01	ci right 2.830080e-01	k: 536498	n:1900000
KS ci ratio: 1.383045e-01	ci left: 3.933991e-04	ci right 4.523516e-04	k: 802	n:1900000
ZFPM2   1900000 perm   1814 sec   (1048 perm/sec)   p_kst 4.221053e-04   p_cons 2.823674e-01   p_joint 3.047368e-04

Joint ci ratio: 1.383047e-01	ci left: 3.913394e-04	ci right 4.499833e-04	k: 802	n:1910000
Cons ci ratio: 4.522109e-03	ci left: 2.817025e-01	ci right 2.829798e-01	k: 539271	n:1910000
KS ci ratio: 1.381327e-01	ci left: 3.923503e-04	ci right 4.510666e-04	k: 804	n:1910000
ZFPM2   1910000 perm   1830 sec   (1044 perm/sec)   p_kst 4.209424e-04   p_cons 2.823408e-01   p_joint 4.198953e-04

Joint ci ratio: 1.379615e-01	ci left: 3.913125e-04	ci right 4.497949e-04	k: 806	n:1920000
Cons ci ratio: 4.510100e-03	ci left: 2.817238e-01	ci right 2.829977e-01	k: 542132	n:1920000
KS ci ratio: 1.375359e-01	ci left: 3.938269e-04	ci right 4.524887e-04	k: 811	n:1920000
ZFPM2   1920000 perm   1847 sec   (1040 perm/sec)   p_kst 4.223958e-04   p_cons 2.823604e-01   p_joint 4.197917e-04

Joint ci ratio: 1.377058e-01	ci left: 3.907858e-04	ci right 4.490723e-04	k: 809	n:1930000
Cons ci ratio: 4.498145e-03	ci left: 2.817484e-01	ci right 2.830191e-01	k: 545000	n:1930000
KS ci ratio: 1.371984e-01	ci left: 3.937877e-04	ci right 4.522879e-04	k: 815	n:1930000
ZFPM2   1930000 perm   1864 sec   (1036 perm/sec)   p_kst 4.222798e-04   p_cons 2.823834e-01   p_joint 4.191710e-04

Joint ci ratio: 1.373671e-01	ci left: 3.907623e-04	ci right 4.488903e-04	k: 813	n:1940000
Cons ci ratio: 4.486296e-03	ci left: 2.817718e-01	ci right 2.830392e-01	k: 547866	n:1940000
KS ci ratio: 1.368634e-01	ci left: 3.937490e-04	ci right 4.520891e-04	k: 819	n:1940000
ZFPM2   1940000 perm   1880 sec   (1032 perm/sec)   p_kst 4.221649e-04   p_cons 2.824052e-01   p_joint 4.190722e-04

Joint ci ratio: 1.371987e-01	ci left: 3.897488e-04	ci right 4.476492e-04	k: 815	n:1950000
Cons ci ratio: 4.475441e-03	ci left: 2.817134e-01	ci right 2.829775e-01	k: 550573	n:1950000
KS ci ratio: 1.366968e-01	ci left: 3.927203e-04	ci right 4.508314e-04	k: 821	n:1950000
ZFPM2   1950000 perm   1898 sec   (1028 perm/sec)   p_kst 4.210256e-04   p_cons 2.823451e-01   p_joint 4.179487e-04

Joint ci ratio: 1.365309e-01	ci left: 3.917022e-04	ci right 4.495865e-04	k: 823	n:1960000
Cons ci ratio: 4.464063e-03	ci left: 2.817102e-01	ci right 2.829711e-01	k: 553387	n:1960000
KS ci ratio: 1.358727e-01	ci left: 3.956448e-04	ci right 4.538071e-04	k: 831	n:1960000
ZFPM2   1960000 perm   1915 sec   (1024 perm/sec)   p_kst 4.239796e-04   p_cons 2.823403e-01   p_joint 4.198980e-04

Joint ci ratio: 1.358728e-01	ci left: 3.936364e-04	ci right 4.515035e-04	k: 831	n:1970000
Cons ci ratio: 4.452375e-03	ci left: 2.817430e-01	ci right 2.830007e-01	k: 556272	n:1970000
KS ci ratio: 1.354662e-01	ci left: 3.960884e-04	ci right 4.541276e-04	k: 836	n:1970000
ZFPM2   1970000 perm   1932 sec   (1020 perm/sec)   p_kst 4.243655e-04   p_cons 2.823716e-01   p_joint 4.218274e-04

Joint ci ratio: 1.357099e-01	ci left: 3.926241e-04	ci right 4.502676e-04	k: 833	n:1980000
Cons ci ratio: 4.440712e-03	ci left: 2.817816e-01	ci right 2.830362e-01	k: 559169	n:1980000
KS ci ratio: 1.353047e-01	ci left: 3.950638e-04	ci right 4.528784e-04	k: 838	n:1980000
ZFPM2   1980000 perm   1951 sec   (1015 perm/sec)   p_kst 4.232323e-04   p_cons 2.824086e-01   p_joint 4.207071e-04

Joint ci ratio: 1.353049e-01	ci left: 3.930785e-04	ci right 4.506026e-04	k: 838	n:1990000
Cons ci ratio: 4.429519e-03	ci left: 2.817852e-01	ci right 2.830366e-01	k: 561997	n:1990000
KS ci ratio: 1.349833e-01	ci left: 3.950207e-04	ci right 4.526806e-04	k: 842	n:1990000
ZFPM2   1990000 perm   1968 sec   (1011 perm/sec)   p_kst 4.231156e-04   p_cons 2.824106e-01   p_joint 4.211055e-04

Joint ci ratio: 1.124721e-01	ci left: 5.728546e-04	ci right 6.416048e-04	k: 1213	n:2000000
Cons ci ratio: 4.418639e-03	ci left: 2.817677e-01	ci right 2.830159e-01	k: 564783	n:2000000
KS ci ratio: 1.345055e-01	ci left: 3.959444e-04	ci right 4.535182e-04	k: 848	n:2000000
ZFPM2   2000000 perm   1985 sec   (1007 perm/sec)   p_kst 4.240000e-04   p_cons 2.823915e-01   p_joint 6.065000e-04

Joint ci ratio: 1.121952e-01	ci left: 5.729057e-04	ci right 6.414817e-04	k: 1219	n:2010000
Cons ci ratio: 4.407438e-03	ci left: 2.817872e-01	ci right 2.830324e-01	k: 567643	n:2010000
KS ci ratio: 1.339543e-01	ci left: 3.973402e-04	ci right 4.548614e-04	k: 855	n:2010000
ZFPM2   2010000 perm   2003 sec   (1004 perm/sec)   p_kst 4.253731e-04   p_cons 2.824095e-01   p_joint 6.064677e-04

Joint ci ratio: 1.132215e-01	ci left: 5.594853e-04	ci right 6.271083e-04	k: 1197	n:2020000
Cons ci ratio: 4.396419e-03	ci left: 2.817976e-01	ci right 2.830397e-01	k: 570485	n:2020000
KS ci ratio: 1.337981e-01	ci left: 3.963301e-04	ci right 4.536328e-04	k: 857	n:2020000
ZFPM2   2020000 perm   2020 sec   (1000 perm/sec)   p_kst 4.242574e-04   p_cons 2.824183e-01   p_joint 5.925743e-04

Joint ci ratio: 1.153612e-01	ci left: 5.356735e-04	ci right 6.017254e-04	k: 1153	n:2030000
Cons ci ratio: 4.385690e-03	ci left: 2.817887e-01	ci right 2.830277e-01	k: 573288	n:2030000
KS ci ratio: 1.336425e-01	ci left: 3.953300e-04	ci right 4.524164e-04	k: 859	n:2030000
ZFPM2   2030000 perm   2039 sec   (996 perm/sec)   p_kst 4.231527e-04   p_cons 2.824079e-01   p_joint 5.679803e-04

Joint ci ratio: 1.152116e-01	ci left: 5.344758e-04	ci right 6.002887e-04	k: 1156	n:2040000
Cons ci ratio: 4.374864e-03	ci left: 2.817960e-01	ci right 2.830320e-01	k: 576124	n:2040000
KS ci ratio: 1.333328e-01	ci left: 3.952874e-04	ci right 4.522249e-04	k: 863	n:2040000
ZFPM2   2040000 perm   2057 sec   (992 perm/sec)   p_kst 4.230392e-04   p_cons 2.824137e-01   p_joint 5.666667e-04

Joint ci ratio: 1.149634e-01	ci left: 5.342374e-04	ci right 5.998697e-04	k: 1161	n:2050000
Cons ci ratio: 4.364145e-03	ci left: 2.818009e-01	ci right 2.830339e-01	k: 578955	n:2050000
KS ci ratio: 1.329487e-01	ci left: 3.957170e-04	ci right 4.525391e-04	k: 868	n:2050000
ZFPM2   2050000 perm   2074 sec   (988 perm/sec)   p_kst 4.234146e-04   p_cons 2.824171e-01   p_joint 5.663415e-04

Joint ci ratio: 1.146678e-01	ci left: 5.344730e-04	ci right 5.999540e-04	k: 1167	n:2060000
Cons ci ratio: 4.353134e-03	ci left: 2.818401e-01	ci right 2.830702e-01	k: 581857	n:2060000
KS ci ratio: 1.327198e-01	ci left: 3.952039e-04	ci right 4.518470e-04	k: 871	n:2060000
ZFPM2   2060000 perm   2092 sec   (985 perm/sec)   p_kst 4.228155e-04   p_cons 2.824549e-01   p_joint 5.665049e-04

Joint ci ratio: 1.145209e-01	ci left: 5.332987e-04	ci right 5.985464e-04	k: 1170	n:2070000
Cons ci ratio: 4.342562e-03	ci left: 2.818457e-01	ci right 2.830728e-01	k: 584690	n:2070000
KS ci ratio: 1.321902e-01	ci left: 3.965643e-04	ci right 4.531578e-04	k: 878	n:2070000
ZFPM2   2070000 perm   2110 sec   (981 perm/sec)   p_kst 4.241546e-04   p_cons 2.824589e-01   p_joint 5.652174e-04

Joint ci ratio: 1.216407e-01	ci left: 4.686784e-04	ci right 5.298417e-04	k: 1037	n:2080000
Cons ci ratio: 4.332268e-03	ci left: 2.818325e-01	ci right 2.830566e-01	k: 587484	n:2080000
KS ci ratio: 1.319652e-01	ci left: 3.960524e-04	ci right 4.524691e-04	k: 881	n:2080000
ZFPM2   2080000 perm   2128 sec   (977 perm/sec)   p_kst 4.235577e-04   p_cons 2.824442e-01   p_joint 4.985577e-04

Joint ci ratio: 1.214070e-01	ci left: 4.682916e-04	ci right 5.292786e-04	k: 1041	n:2090000
Cons ci ratio: 4.322287e-03	ci left: 2.817969e-01	ci right 2.830180e-01	k: 590231	n:2090000
KS ci ratio: 1.316670e-01	ci left: 3.960082e-04	ci right 4.522811e-04	k: 885	n:2090000
ZFPM2   2090000 perm   2146 sec   (974 perm/sec)   p_kst 4.234450e-04   p_cons 2.824072e-01   p_joint 4.980861e-04

Joint ci ratio: 1.211747e-01	ci left: 4.679086e-04	ci right 5.287207e-04	k: 1045	n:2100000
Cons ci ratio: 4.312024e-03	ci left: 2.817945e-01	ci right 2.830127e-01	k: 593047	n:2100000
KS ci ratio: 1.313708e-01	ci left: 3.959645e-04	ci right 4.520948e-04	k: 889	n:2100000
ZFPM2   2100000 perm   2164 sec   (970 perm/sec)   p_kst 4.233333e-04   p_cons 2.824033e-01   p_joint 4.976190e-04

Joint ci ratio: 1.210591e-01	ci left: 4.666102e-04	ci right 5.271915e-04	k: 1047	n:2110000
Cons ci ratio: 4.302026e-03	ci left: 2.817742e-01	ci right 2.829894e-01	k: 595825	n:2110000
KS ci ratio: 1.311500e-01	ci left: 3.954630e-04	ci right 4.514206e-04	k: 892	n:2110000
ZFPM2   2110000 perm   2182 sec   (967 perm/sec)   p_kst 4.227488e-04   p_cons 2.823815e-01   p_joint 4.962085e-04

Joint ci ratio: 1.208863e-01	ci left: 4.657814e-04	ci right 5.261627e-04	k: 1050	n:2120000
Cons ci ratio: 4.292191e-03	ci left: 2.817451e-01	ci right 2.829574e-01	k: 598584	n:2120000
KS ci ratio: 1.308573e-01	ci left: 3.954226e-04	ci right 4.512399e-04	k: 896	n:2120000
ZFPM2   2120000 perm   2200 sec   (964 perm/sec)   p_kst 4.226415e-04   p_cons 2.823509e-01   p_joint 4.952830e-04

Joint ci ratio: 1.205426e-01	ci left: 4.663265e-04	ci right 5.265943e-04	k: 1056	n:2130000
Cons ci ratio: 4.282275e-03	ci left: 2.817303e-01	ci right 2.829398e-01	k: 601373	n:2130000
KS ci ratio: 1.304217e-01	ci left: 3.962910e-04	ci right 4.520303e-04	k: 902	n:2130000
ZFPM2   2130000 perm   2218 sec   (960 perm/sec)   p_kst 4.234742e-04   p_cons 2.823347e-01   p_joint 4.957746e-04

Joint ci ratio: 1.207143e-01	ci left: 4.627878e-04	ci right 5.226895e-04	k: 1053	n:2140000
Cons ci ratio: 4.272255e-03	ci left: 2.817320e-01	ci right 2.829387e-01	k: 604197	n:2140000
KS ci ratio: 1.300621e-01	ci left: 3.966995e-04	ci right 4.523305e-04	k: 907	n:2140000
ZFPM2   2140000 perm   2237 sec   (957 perm/sec)   p_kst 4.238318e-04   p_cons 2.823350e-01   p_joint 4.920561e-04

Joint ci ratio: 1.203721e-01	ci left: 4.633419e-04	ci right 5.231332e-04	k: 1059	n:2150000
Cons ci ratio: 4.261683e-03	ci left: 2.817928e-01	ci right 2.829967e-01	k: 607148	n:2150000
KS ci ratio: 1.297055e-01	ci left: 3.971044e-04	ci right 4.526277e-04	k: 912	n:2150000
ZFPM2   2150000 perm   2255 sec   (953 perm/sec)   p_kst 4.241860e-04   p_cons 2.823944e-01   p_joint 4.925581e-04

Joint ci ratio: 1.200892e-01	ci left: 4.634420e-04	ci right 5.230957e-04	k: 1064	n:2160000
Cons ci ratio: 4.251831e-03	ci left: 2.817919e-01	ci right 2.829930e-01	k: 609967	n:2160000
KS ci ratio: 1.292110e-01	ci left: 3.984018e-04	ci right 4.538778e-04	k: 919	n:2160000
ZFPM2   2160000 perm   2274 sec   (950 perm/sec)   p_kst 4.254630e-04   p_cons 2.823921e-01   p_joint 4.925926e-04

Joint ci ratio: 1.206003e-01	ci left: 4.572836e-04	ci right 5.164130e-04	k: 1055	n:2170000
Cons ci ratio: 4.241950e-03	ci left: 2.818002e-01	ci right 2.829985e-01	k: 612806	n:2170000
KS ci ratio: 1.287222e-01	ci left: 3.996876e-04	ci right 4.551160e-04	k: 926	n:2170000
ZFPM2   2170000 perm   2292 sec   (947 perm/sec)   p_kst 4.267281e-04   p_cons 2.823991e-01   p_joint 4.861751e-04

Joint ci ratio: 1.204294e-01	ci left: 4.565206e-04	ci right 5.154617e-04	k: 1058	n:2180000
Cons ci ratio: 4.232449e-03	ci left: 2.817786e-01	ci right 2.829742e-01	k: 615580	n:2180000
KS ci ratio: 1.285144e-01	ci left: 3.991860e-04	ci right 4.544488e-04	k: 929	n:2180000
ZFPM2   2180000 perm   2311 sec   (943 perm/sec)   p_kst 4.261468e-04   p_cons 2.823761e-01   p_joint 4.853211e-04

Joint ci ratio: 1.203159e-01	ci left: 4.553218e-04	ci right 5.140488e-04	k: 1060	n:2190000
Cons ci ratio: 4.222474e-03	ci left: 2.818089e-01	ci right 2.830018e-01	k: 618467	n:2190000
KS ci ratio: 1.283765e-01	ci left: 3.982471e-04	ci right 4.533162e-04	k: 931	n:2190000
ZFPM2   2190000 perm   2329 sec   (940 perm/sec)   p_kst 4.251142e-04   p_cons 2.824050e-01   p_joint 4.840183e-04

Joint ci ratio: 1.200898e-01	ci left: 4.550156e-04	ci right 5.135850e-04	k: 1064	n:2200000
Cons ci ratio: 4.212829e-03	ci left: 2.818138e-01	ci right 2.830040e-01	k: 621299	n:2200000
KS ci ratio: 1.280335e-01	ci left: 3.986368e-04	ci right 4.536013e-04	k: 936	n:2200000
ZFPM2   2200000 perm   2348 sec   (937 perm/sec)   p_kst 4.254545e-04   p_cons 2.824086e-01   p_joint 4.836364e-04

Joint ci ratio: 1.210605e-01	ci left: 4.454963e-04	ci right 5.033371e-04	k: 1047	n:2210000
Cons ci ratio: 4.203414e-03	ci left: 2.818029e-01	ci right 2.829904e-01	k: 624096	n:2210000
KS ci ratio: 1.276255e-01	ci left: 3.994611e-04	ci right 4.543505e-04	k: 942	n:2210000
ZFPM2   2210000 perm   2366 sec   (934 perm/sec)   p_kst 4.262443e-04   p_cons 2.823964e-01   p_joint 4.737557e-04

Joint ci ratio: 1.208301e-01	ci left: 4.452368e-04	ci right 5.029261e-04	k: 1051	n:2220000
Cons ci ratio: 4.194248e-03	ci left: 2.817741e-01	ci right 2.829589e-01	k: 626853	n:2220000
KS ci ratio: 1.273557e-01	ci left: 3.994061e-04	ci right 4.541631e-04	k: 946	n:2220000
ZFPM2   2220000 perm   2385 sec   (931 perm/sec)   p_kst 4.261261e-04   p_cons 2.823662e-01   p_joint 4.734234e-04

Joint ci ratio: 1.204870e-01	ci left: 4.458496e-04	ci right 5.034425e-04	k: 1057	n:2230000
Cons ci ratio: 4.184656e-03	ci left: 2.817926e-01	ci right 2.829747e-01	k: 629715	n:2230000
KS ci ratio: 1.272215e-01	ci left: 3.984833e-04	ci right 4.530519e-04	k: 948	n:2230000
ZFPM2   2230000 perm   2404 sec   (928 perm/sec)   p_kst 4.251121e-04   p_cons 2.823834e-01   p_joint 4.739910e-04

Joint ci ratio: 1.238098e-01	ci left: 4.196226e-04	ci right 4.754321e-04	k: 1001	n:2240000
Cons ci ratio: 4.175373e-03	ci left: 2.817873e-01	ci right 2.829668e-01	k: 632524	n:2240000
KS ci ratio: 1.268211e-01	ci left: 3.992978e-04	ci right 4.537930e-04	k: 954	n:2240000
ZFPM2   2240000 perm   2423 sec   (924 perm/sec)   p_kst 4.258929e-04   p_cons 2.823768e-01   p_joint 4.468750e-04

Joint ci ratio: 1.235634e-01	ci left: 4.194804e-04	ci right 4.751518e-04	k: 1005	n:2250000
Cons ci ratio: 4.166353e-03	ci left: 2.817625e-01	ci right 2.829393e-01	k: 635289	n:2250000
KS ci ratio: 1.263588e-01	ci left: 4.005358e-04	ci right 4.549857e-04	k: 961	n:2250000
ZFPM2   2250000 perm   2443 sec   (921 perm/sec)   p_kst 4.271111e-04   p_cons 2.823507e-01   p_joint 4.466667e-04

Joint ci ratio: 1.230142e-01	ci left: 4.214838e-04	ci right 4.771544e-04	k: 1014	n:2260000
Cons ci ratio: 4.156810e-03	ci left: 2.817946e-01	ci right 2.829688e-01	k: 638182	n:2260000
KS ci ratio: 1.260969e-01	ci left: 4.004775e-04	ci right 4.547982e-04	k: 965	n:2260000
ZFPM2   2260000 perm   2462 sec   (918 perm/sec)   p_kst 4.269912e-04   p_cons 2.823814e-01   p_joint 4.486726e-04

Joint ci ratio: 1.228933e-01	ci left: 4.204810e-04	ci right 4.759606e-04	k: 1016	n:2270000
Cons ci ratio: 4.147269e-03	ci left: 2.818325e-01	ci right 2.830042e-01	k: 641089	n:2270000
KS ci ratio: 1.260318e-01	ci left: 3.991399e-04	ci right 4.532491e-04	k: 966	n:2270000
ZFPM2   2270000 perm   2481 sec   (915 perm/sec)   p_kst 4.255507e-04   p_cons 2.824181e-01   p_joint 4.475771e-04

Joint ci ratio: 1.224725e-01	ci left: 4.216127e-04	ci right 4.770373e-04	k: 1023	n:2280000
Cons ci ratio: 4.138066e-03	ci left: 2.818433e-01	ci right 2.830125e-01	k: 643935	n:2280000
KS ci ratio: 1.255136e-01	ci left: 4.007877e-04	ci right 4.548803e-04	k: 974	n:2280000
ZFPM2   2280000 perm   2501 sec   (912 perm/sec)   p_kst 4.271930e-04   p_cons 2.824276e-01   p_joint 4.486842e-04

Joint ci ratio: 1.222340e-01	ci left: 4.214649e-04	ci right 4.767544e-04	k: 1027	n:2290000
Cons ci ratio: 4.128849e-03	ci left: 2.818615e-01	ci right 2.830281e-01	k: 646798	n:2290000
KS ci ratio: 1.251291e-01	ci left: 4.015755e-04	ci right 4.555961e-04	k: 980	n:2290000
ZFPM2   2290000 perm   2520 sec   (909 perm/sec)   p_kst 4.279476e-04   p_cons 2.824445e-01   p_joint 4.484716e-04

Joint ci ratio: 1.219969e-01	ci left: 4.213185e-04	ci right 4.764738e-04	k: 1031	n:2300000
Cons ci ratio: 4.119684e-03	ci left: 2.818804e-01	ci right 2.830445e-01	k: 649663	n:2300000
KS ci ratio: 1.248748e-01	ci left: 4.015143e-04	ci right 4.554087e-04	k: 984	n:2300000
ZFPM2   2300000 perm   2540 sec   (906 perm/sec)   p_kst 4.278261e-04   p_cons 2.824622e-01   p_joint 4.482609e-04

Joint ci ratio: 1.217024e-01	ci left: 4.215931e-04	ci right 4.766415e-04	k: 1036	n:2310000
Cons ci ratio: 4.110707e-03	ci left: 2.818866e-01	ci right 2.830481e-01	k: 652499	n:2310000
KS ci ratio: 1.245591e-01	ci left: 4.018731e-04	ci right 4.556692e-04	k: 989	n:2310000
ZFPM2   2310000 perm   2559 sec   (903 perm/sec)   p_kst 4.281385e-04   p_cons 2.824671e-01   p_joint 4.484848e-04

Joint ci ratio: 1.214684e-01	ci left: 4.214476e-04	ci right 4.763636e-04	k: 1040	n:2320000
Cons ci ratio: 4.101519e-03	ci left: 2.819194e-01	ci right 2.830785e-01	k: 655397	n:2320000
KS ci ratio: 1.244335e-01	ci left: 4.009761e-04	ci right 4.545941e-04	k: 991	n:2320000
ZFPM2   2320000 perm   2579 sec   (900 perm/sec)   p_kst 4.271552e-04   p_cons 2.824987e-01   p_joint 4.482759e-04

Joint ci ratio: 1.209465e-01	ci left: 4.233844e-04	ci right 4.782988e-04	k: 1049	n:2330000
Cons ci ratio: 4.092825e-03	ci left: 2.819091e-01	ci right 2.830657e-01	k: 658195	n:2330000
KS ci ratio: 1.239967e-01	ci left: 4.021661e-04	ci right 4.557406e-04	k: 998	n:2330000
ZFPM2   2330000 perm   2599 sec   (897 perm/sec)   p_kst 4.283262e-04   p_cons 2.824871e-01   p_joint 4.502146e-04

Joint ci ratio: 1.207168e-01	ci left: 4.232328e-04	ci right 4.780158e-04	k: 1053	n:2340000
Cons ci ratio: 4.084789e-03	ci left: 2.818391e-01	ci right 2.829931e-01	k: 660853	n:2340000
KS ci ratio: 1.237492e-01	ci left: 4.021039e-04	ci right 4.555553e-04	k: 1002	n:2340000
ZFPM2   2340000 perm   2619 sec   (893 perm/sec)   p_kst 4.282051e-04   p_cons 2.824158e-01   p_joint 4.500000e-04

Joint ci ratio: 1.204884e-01	ci left: 4.230826e-04	ci right 4.777352e-04	k: 1057	n:2350000
Cons ci ratio: 4.075824e-03	ci left: 2.818666e-01	ci right 2.830182e-01	k: 663739	n:2350000
KS ci ratio: 1.235032e-01	ci left: 4.020423e-04	ci right 4.553715e-04	k: 1006	n:2350000
ZFPM2   2350000 perm   2639 sec   (891 perm/sec)   p_kst 4.280851e-04   p_cons 2.824421e-01   p_joint 4.497872e-04

Joint ci ratio: 1.201482e-01	ci left: 4.237557e-04	ci right 4.783297e-04	k: 1063	n:2360000
Cons ci ratio: 4.067045e-03	ci left: 2.818812e-01	ci right 2.830304e-01	k: 666595	n:2360000
KS ci ratio: 1.231977e-01	ci left: 4.023920e-04	ci right 4.556260e-04	k: 1011	n:2360000
ZFPM2   2360000 perm   2659 sec   (888 perm/sec)   p_kst 4.283898e-04   p_cons 2.824555e-01   p_joint 4.504237e-04

Joint ci ratio: 1.197548e-01	ci left: 4.248327e-04	ci right 4.793536e-04	k: 1070	n:2370000
Cons ci ratio: 4.058441e-03	ci left: 2.818839e-01	ci right 2.830306e-01	k: 669423	n:2370000
KS ci ratio: 1.229549e-01	ci left: 4.023300e-04	ci right 4.554432e-04	k: 1015	n:2370000
ZFPM2   2370000 perm   2679 sec   (885 perm/sec)   p_kst 4.282700e-04   p_cons 2.824570e-01   p_joint 4.514768e-04

Joint ci ratio: 1.194208e-01	ci left: 4.254933e-04	ci right 4.799359e-04	k: 1076	n:2380000
Cons ci ratio: 4.049829e-03	ci left: 2.818928e-01	ci right 2.830371e-01	k: 672266	n:2380000
KS ci ratio: 1.225934e-01	ci left: 4.030831e-04	ci right 4.561280e-04	k: 1021	n:2380000
ZFPM2   2380000 perm   2699 sec   (882 perm/sec)   p_kst 4.289916e-04   p_cons 2.824647e-01   p_joint 4.521008e-04

Joint ci ratio: 1.191445e-01	ci left: 4.257426e-04	ci right 4.800822e-04	k: 1081	n:2390000
Cons ci ratio: 4.041150e-03	ci left: 2.819138e-01	ci right 2.830558e-01	k: 675138	n:2390000
KS ci ratio: 1.224139e-01	ci left: 4.026133e-04	ci right 4.555132e-04	k: 1024	n:2390000
ZFPM2   2390000 perm   2719 sec   (879 perm/sec)   p_kst 4.284519e-04   p_cons 2.824845e-01   p_joint 4.523013e-04

Joint ci ratio: 1.195321e-01	ci left: 4.211390e-04	ci right 4.750783e-04	k: 1074	n:2400000
Cons ci ratio: 4.032867e-03	ci left: 2.819005e-01	ci right 2.830400e-01	k: 677928	n:2400000
KS ci ratio: 1.222352e-01	ci left: 4.021475e-04	ci right 4.549034e-04	k: 1027	n:2400000
ZFPM2   2400000 perm   2740 sec   (876 perm/sec)   p_kst 4.279167e-04   p_cons 2.824700e-01   p_joint 4.475000e-04

Joint ci ratio: 1.199234e-01	ci left: 4.165739e-04	ci right 4.701155e-04	k: 1067	n:2410000
Cons ci ratio: 4.024617e-03	ci left: 2.818889e-01	ci right 2.830261e-01	k: 680722	n:2410000
KS ci ratio: 1.219981e-01	ci left: 4.020879e-04	ci right 4.547263e-04	k: 1031	n:2410000
ZFPM2   2410000 perm   2760 sec   (873 perm/sec)   p_kst 4.278008e-04   p_cons 2.824573e-01   p_joint 4.427386e-04

Joint ci ratio: 1.195880e-01	ci left: 4.172576e-04	ci right 4.707265e-04	k: 1073	n:2420000
Cons ci ratio: 4.016210e-03	ci left: 2.818985e-01	ci right 2.830334e-01	k: 683567	n:2420000
KS ci ratio: 1.216450e-01	ci left: 4.028302e-04	ci right 4.554021e-04	k: 1037	n:2420000
ZFPM2   2420000 perm   2780 sec   (870 perm/sec)   p_kst 4.285124e-04   p_cons 2.824657e-01   p_joint 4.433884e-04

Joint ci ratio: 1.193105e-01	ci left: 4.175366e-04	ci right 4.709084e-04	k: 1078	n:2430000
Cons ci ratio: 4.007688e-03	ci left: 2.819249e-01	ci right 2.830575e-01	k: 686453	n:2430000
KS ci ratio: 1.214696e-01	ci left: 4.023695e-04	ci right 4.548001e-04	k: 1040	n:2430000
ZFPM2   2430000 perm   2800 sec   (868 perm/sec)   p_kst 4.279835e-04   p_cons 2.824909e-01   p_joint 4.436214e-04

Joint ci ratio: 1.190900e-01	ci left: 4.174159e-04	ci right 4.706666e-04	k: 1082	n:2440000
Cons ci ratio: 3.999673e-03	ci left: 2.819053e-01	ci right 2.830354e-01	k: 689227	n:2440000
KS ci ratio: 1.211789e-01	ci left: 4.027074e-04	ci right 4.550475e-04	k: 1045	n:2440000
ZFPM2   2440000 perm   2821 sec   (865 perm/sec)   p_kst 4.282787e-04   p_cons 2.824701e-01   p_joint 4.434426e-04

Joint ci ratio: 1.198678e-01	ci left: 4.101685e-04	ci right 4.628607e-04	k: 1068	n:2450000
Cons ci ratio: 3.991553e-03	ci left: 2.819012e-01	ci right 2.830291e-01	k: 692039	n:2450000
KS ci ratio: 1.210633e-01	ci left: 4.018553e-04	ci right 4.540312e-04	k: 1047	n:2450000
ZFPM2   2450000 perm   2842 sec   (862 perm/sec)   p_kst 4.273469e-04   p_cons 2.824649e-01   p_joint 4.359184e-04

Joint ci ratio: 1.197558e-01	ci left: 4.092898e-04	ci right 4.618165e-04	k: 1070	n:2460000
Cons ci ratio: 3.983414e-03	ci left: 2.819041e-01	ci right 2.830297e-01	k: 694868	n:2460000
KS ci ratio: 1.208904e-01	ci left: 4.014043e-04	ci right 4.534420e-04	k: 1050	n:2460000
ZFPM2   2460000 perm   2863 sec   (859 perm/sec)   p_kst 4.268293e-04   p_cons 2.824667e-01   p_joint 4.349593e-04

Joint ci ratio: 1.198119e-01	ci left: 4.072400e-04	ci right 4.595299e-04	k: 1069	n:2470000
Cons ci ratio: 3.975127e-03	ci left: 2.819273e-01	ci right 2.830506e-01	k: 697747	n:2470000
KS ci ratio: 1.207183e-01	ci left: 4.009571e-04	ci right 4.528574e-04	k: 1053	n:2470000
ZFPM2   2470000 perm   2884 sec   (856 perm/sec)   p_kst 4.263158e-04   p_cons 2.824887e-01   p_joint 4.327935e-04

Joint ci ratio: 1.197560e-01	ci left: 4.059891e-04	ci right 4.580922e-04	k: 1070	n:2480000
Cons ci ratio: 3.967041e-03	ci left: 2.819349e-01	ci right 2.830559e-01	k: 700588	n:2480000
KS ci ratio: 1.206040e-01	ci left: 4.001224e-04	ci right 4.518622e-04	k: 1055	n:2480000
ZFPM2   2480000 perm   2904 sec   (854 perm/sec)   p_kst 4.254032e-04   p_cons 2.824952e-01   p_joint 4.314516e-04

Joint ci ratio: 1.197561e-01	ci left: 4.043586e-04	ci right 4.562525e-04	k: 1070	n:2490000
Cons ci ratio: 3.959032e-03	ci left: 2.819396e-01	ci right 2.830584e-01	k: 703422	n:2490000
KS ci ratio: 1.204900e-01	ci left: 3.992945e-04	ci right 4.508749e-04	k: 1057	n:2490000
ZFPM2   2490000 perm   2925 sec   (851 perm/sec)   p_kst 4.244980e-04   p_cons 2.824988e-01   p_joint 4.297189e-04

Joint ci ratio: 1.195331e-01	ci left: 4.042932e-04	ci right 4.560754e-04	k: 1074	n:2500000
Cons ci ratio: 3.950883e-03	ci left: 2.819636e-01	ci right 2.830801e-01	k: 706304	n:2500000
KS ci ratio: 1.202062e-01	ci left: 3.996371e-04	ci right 4.511316e-04	k: 1062	n:2500000
ZFPM2   2500000 perm   2947 sec   (848 perm/sec)   p_kst 4.248000e-04   p_cons 2.825216e-01   p_joint 4.296000e-04

Joint ci ratio: 1.211796e-01	ci left: 3.914764e-04	ci right 4.423571e-04	k: 1045	n:2510000
Cons ci ratio: 3.942971e-03	ci left: 2.819682e-01	ci right 2.830825e-01	k: 709138	n:2510000
KS ci ratio: 1.198123e-01	ci left: 4.007501e-04	ci right 4.522068e-04	k: 1069	n:2510000
ZFPM2   2510000 perm   2968 sec   (846 perm/sec)   p_kst 4.258964e-04   p_cons 2.825251e-01   p_joint 4.163347e-04

Joint ci ratio: 1.208910e-01	ci left: 3.918470e-04	ci right 4.426459e-04	k: 1050	n:2520000
Cons ci ratio: 3.935126e-03	ci left: 2.819708e-01	ci right 2.830829e-01	k: 711967	n:2520000
KS ci ratio: 1.196447e-01	ci left: 4.003146e-04	ci right 4.516384e-04	k: 1072	n:2520000
ZFPM2   2520000 perm   2990 sec   (843 perm/sec)   p_kst 4.253968e-04   p_cons 2.825266e-01   p_joint 4.166667e-04

Joint ci ratio: 1.206045e-01	ci left: 3.922148e-04	ci right 4.429322e-04	k: 1055	n:2530000
Cons ci ratio: 3.927219e-03	ci left: 2.819844e-01	ci right 2.830944e-01	k: 714824	n:2530000
KS ci ratio: 1.193116e-01	ci left: 4.010330e-04	ci right 4.522957e-04	k: 1078	n:2530000
ZFPM2   2530000 perm   3011 sec   (840 perm/sec)   p_kst 4.260870e-04   p_cons 2.825391e-01   p_joint 4.169960e-04

Joint ci ratio: 1.219404e-01	ci left: 3.818900e-04	ci right 4.318589e-04	k: 1032	n:2540000
Cons ci ratio: 3.919890e-03	ci left: 2.819432e-01	ci right 2.830510e-01	k: 717542	n:2540000
KS ci ratio: 1.191461e-01	ci left: 4.006000e-04	ci right 4.517313e-04	k: 1081	n:2540000
ZFPM2   2540000 perm   3032 sec   (838 perm/sec)   p_kst 4.255906e-04   p_cons 2.824969e-01   p_joint 4.062992e-04

Joint ci ratio: 1.215292e-01	ci left: 3.830540e-04	ci right 4.329940e-04	k: 1039	n:2550000
Cons ci ratio: 3.911943e-03	ci left: 2.819706e-01	ci right 2.830762e-01	k: 720434	n:2550000
KS ci ratio: 1.189813e-01	ci left: 4.001705e-04	ci right 4.511713e-04	k: 1084	n:2550000
ZFPM2   2550000 perm   3054 sec   (835 perm/sec)   p_kst 4.250980e-04   p_cons 2.825231e-01   p_joint 4.074510e-04

Joint ci ratio: 1.211801e-01	ci left: 3.838303e-04	ci right 4.337174e-04	k: 1045	n:2560000
Cons ci ratio: 3.904604e-03	ci left: 2.819396e-01	ci right 2.830430e-01	k: 723177	n:2560000
KS ci ratio: 1.186536e-01	ci left: 4.008814e-04	ci right 4.518223e-04	k: 1090	n:2560000
ZFPM2   2560000 perm   3075 sec   (832 perm/sec)   p_kst 4.257812e-04   p_cons 2.824910e-01   p_joint 4.082031e-04

Joint ci ratio: 1.215879e-01	ci left: 3.796957e-04	ci right 4.292235e-04	k: 1038	n:2570000
Cons ci ratio: 3.897224e-03	ci left: 2.819173e-01	ci right 2.830186e-01	k: 725942	n:2570000
KS ci ratio: 1.185451e-01	ci left: 4.000767e-04	ci right 4.508655e-04	k: 1092	n:2570000
ZFPM2   2570000 perm   3097 sec   (830 perm/sec)   p_kst 4.249027e-04   p_cons 2.824677e-01   p_joint 4.038911e-04

Joint ci ratio: 1.032005e-01	ci left: 5.300657e-04	ci right 5.881191e-04	k: 1441	n:2580000
Cons ci ratio: 3.889659e-03	ci left: 2.819189e-01	ci right 2.830180e-01	k: 728768	n:2580000
KS ci ratio: 1.182748e-01	ci left: 4.004066e-04	ci right 4.511133e-04	k: 1097	n:2580000
ZFPM2   2580000 perm   3119 sec   (827 perm/sec)   p_kst 4.251938e-04   p_cons 2.824682e-01   p_joint 5.585271e-04

Joint ci ratio: 1.041075e-01	ci left: 5.186167e-04	ci right 5.759459e-04	k: 1416	n:2590000
Cons ci ratio: 3.882134e-03	ci left: 2.819209e-01	ci right 2.830178e-01	k: 731595	n:2590000
KS ci ratio: 1.180600e-01	ci left: 4.003593e-04	ci right 4.509616e-04	k: 1101	n:2590000
ZFPM2   2590000 perm   3140 sec   (825 perm/sec)   p_kst 4.250965e-04   p_cons 2.824691e-01   p_joint 5.467181e-04

Joint ci ratio: 1.048882e-01	ci left: 5.087561e-04	ci right 5.654429e-04	k: 1395	n:2600000
Cons ci ratio: 3.874797e-03	ci left: 2.819078e-01	ci right 2.830027e-01	k: 734383	n:2600000
KS ci ratio: 1.180065e-01	ci left: 3.991927e-04	ci right 4.496231e-04	k: 1102	n:2600000
ZFPM2   2600000 perm   3161 sec   (823 perm/sec)   p_kst 4.238462e-04   p_cons 2.824550e-01   p_joint 5.365385e-04

Joint ci ratio: 1.045144e-01	ci left: 5.105379e-04	ci right 5.672081e-04	k: 1405	n:2610000
Cons ci ratio: 3.867522e-03	ci left: 2.818926e-01	ci right 2.829853e-01	k: 737165	n:2610000
KS ci ratio: 1.177932e-01	ci left: 3.991506e-04	ci right 4.494782e-04	k: 1106	n:2610000
ZFPM2   2610000 perm   3183 sec   (820 perm/sec)   p_kst 4.237548e-04   p_cons 2.824387e-01   p_joint 5.383142e-04

Joint ci ratio: 1.040344e-01	ci left: 5.134218e-04	ci right 5.701344e-04	k: 1418	n:2620000
Cons ci ratio: 3.860052e-03	ci left: 2.819023e-01	ci right 2.829929e-01	k: 740012	n:2620000
KS ci ratio: 1.172121e-01	ci left: 4.017023e-04	ci right 4.520844e-04	k: 1117	n:2620000
ZFPM2   2620000 perm   3205 sec   (817 perm/sec)   p_kst 4.263359e-04   p_cons 2.824473e-01   p_joint 5.412214e-04

Joint ci ratio: 9.656131e-02	ci left: 5.959912e-04	ci right 6.568281e-04	k: 1646	n:2630000
Cons ci ratio: 3.852687e-03	ci left: 2.819054e-01	ci right 2.829939e-01	k: 742842	n:2630000
KS ci ratio: 1.171074e-01	ci left: 4.009131e-04	ci right 4.511482e-04	k: 1119	n:2630000
ZFPM2   2630000 perm   3227 sec   (815 perm/sec)   p_kst 4.254753e-04   p_cons 2.824494e-01   p_joint 6.258555e-04

Joint ci ratio: 9.626943e-02	ci left: 5.974302e-04	ci right 6.582192e-04	k: 1656	n:2640000
Cons ci ratio: 3.845636e-03	ci left: 2.818797e-01	ci right 2.829662e-01	k: 745596	n:2640000
KS ci ratio: 1.167431e-01	ci left: 4.019684e-04	ci right 4.521683e-04	k: 1126	n:2640000
ZFPM2   2640000 perm   3248 sec   (813 perm/sec)   p_kst 4.265152e-04   p_cons 2.824227e-01   p_joint 6.272727e-04

Joint ci ratio: 9.653222e-02	ci left: 5.918614e-04	ci right 6.522574e-04	k: 1647	n:2650000
Cons ci ratio: 3.838235e-03	ci left: 2.818954e-01	ci right 2.829798e-01	k: 748459	n:2650000
KS ci ratio: 1.165881e-01	ci left: 4.015506e-04	ci right 4.516271e-04	k: 1129	n:2650000
ZFPM2   2650000 perm   3270 sec   (810 perm/sec)   p_kst 4.260377e-04   p_cons 2.824374e-01   p_joint 6.215094e-04

Joint ci ratio: 9.662037e-02	ci left: 5.885357e-04	ci right 6.486503e-04	k: 1644	n:2660000
Cons ci ratio: 3.831022e-03	ci left: 2.818955e-01	ci right 2.829779e-01	k: 751281	n:2660000
KS ci ratio: 1.162797e-01	ci left: 4.022310e-04	ci right 4.522505e-04	k: 1135	n:2660000
ZFPM2   2660000 perm   3292 sec   (808 perm/sec)   p_kst 4.266917e-04   p_cons 2.824365e-01   p_joint 6.180451e-04

Joint ci ratio: 9.748411e-02	ci left: 5.757334e-04	ci right 6.350962e-04	k: 1615	n:2670000
Cons ci ratio: 3.823602e-03	ci left: 2.819218e-01	ci right 2.830022e-01	k: 754173	n:2670000
KS ci ratio: 1.162287e-01	ci left: 4.010881e-04	ci right 4.509421e-04	k: 1136	n:2670000
ZFPM2   2670000 perm   3315 sec   (805 perm/sec)   p_kst 4.254682e-04   p_cons 2.824618e-01   p_joint 6.048689e-04

Joint ci ratio: 9.754464e-02	ci left: 5.728571e-04	ci right 6.319620e-04	k: 1613	n:2680000
Cons ci ratio: 3.816323e-03	ci left: 2.819375e-01	ci right 2.830159e-01	k: 757037	n:2680000
KS ci ratio: 1.160757e-01	ci left: 4.006784e-04	ci right 4.504114e-04	k: 1139	n:2680000
ZFPM2   2680000 perm   3337 sec   (803 perm/sec)   p_kst 4.250000e-04   p_cons 2.824765e-01   p_joint 6.018657e-04

Joint ci ratio: 9.739392e-02	ci left: 5.725409e-04	ci right 6.315167e-04	k: 1618	n:2690000
Cons ci ratio: 3.809187e-03	ci left: 2.819423e-01	ci right 2.830187e-01	k: 759872	n:2690000
KS ci ratio: 1.159740e-01	ci left: 3.999108e-04	ci right 4.495021e-04	k: 1141	n:2690000
ZFPM2   2690000 perm   3360 sec   (801 perm/sec)   p_kst 4.241636e-04   p_cons 2.824803e-01   p_joint 6.014870e-04

Joint ci ratio: 9.730386e-02	ci left: 5.715044e-04	ci right 6.303159e-04	k: 1621	n:2700000
Cons ci ratio: 3.802189e-03	ci left: 2.819368e-01	ci right 2.830111e-01	k: 762679	n:2700000
KS ci ratio: 1.158727e-01	ci left: 3.991489e-04	ci right 4.485995e-04	k: 1143	n:2700000
ZFPM2   2700000 perm   3383 sec   (798 perm/sec)   p_kst 4.233333e-04   p_cons 2.824737e-01   p_joint 6.003704e-04

Joint ci ratio: 9.721405e-02	ci left: 5.704756e-04	ci right 6.291240e-04	k: 1624	n:2710000
Cons ci ratio: 3.795118e-03	ci left: 2.819430e-01	ci right 2.830154e-01	k: 765518	n:2710000
KS ci ratio: 1.158221e-01	ci left: 3.980343e-04	ci right 4.473239e-04	k: 1144	n:2710000
ZFPM2   2710000 perm   3406 sec   (796 perm/sec)   p_kst 4.221402e-04   p_cons 2.824790e-01   p_joint 5.992620e-04

Joint ci ratio: 9.700533e-02	ci left: 5.708893e-04	ci right 6.294471e-04	k: 1631	n:2720000
Cons ci ratio: 3.788406e-03	ci left: 2.819150e-01	ci right 2.829854e-01	k: 768264	n:2720000
KS ci ratio: 1.156707e-01	ci left: 3.976420e-04	ci right 4.468142e-04	k: 1147	n:2720000
ZFPM2   2720000 perm   3428 sec   (793 perm/sec)   p_kst 4.216912e-04   p_cons 2.824500e-01   p_joint 5.996324e-04

Joint ci ratio: 9.667996e-02	ci left: 5.727299e-04	ci right 6.312682e-04	k: 1642	n:2730000
Cons ci ratio: 3.781463e-03	ci left: 2.819158e-01	ci right 2.829843e-01	k: 771088	n:2730000
KS ci ratio: 1.154196e-01	ci left: 3.979640e-04	ci right 4.470619e-04	k: 1152	n:2730000
ZFPM2   2730000 perm   3451 sec   (791 perm/sec)   p_kst 4.219780e-04   p_cons 2.824498e-01   p_joint 6.014652e-04

Joint ci ratio: 9.665064e-02	ci left: 5.709958e-04	ci right 6.293381e-04	k: 1643	n:2740000
Cons ci ratio: 3.774575e-03	ci left: 2.819148e-01	ci right 2.829813e-01	k: 773907	n:2740000
KS ci ratio: 1.151701e-01	ci left: 3.982837e-04	ci right 4.473077e-04	k: 1157	n:2740000
ZFPM2   2740000 perm   3474 sec   (789 perm/sec)   p_kst 4.222628e-04   p_cons 2.824478e-01   p_joint 5.996350e-04

Joint ci ratio: 9.748497e-02	ci left: 5.589846e-04	ci right 6.166209e-04	k: 1615	n:2750000
Cons ci ratio: 3.767602e-03	ci left: 2.819269e-01	ci right 2.829914e-01	k: 776762	n:2750000
KS ci ratio: 1.150709e-01	ci left: 3.975418e-04	ci right 4.464293e-04	k: 1159	n:2750000
ZFPM2   2750000 perm   3497 sec   (786 perm/sec)   p_kst 4.214545e-04   p_cons 2.824589e-01   p_joint 5.872727e-04

Joint ci ratio: 9.787980e-02	ci left: 5.523641e-04	ci right 6.095617e-04	k: 1602	n:2760000
Cons ci ratio: 3.760759e-03	ci left: 2.819291e-01	ci right 2.829917e-01	k: 779590	n:2760000
KS ci ratio: 1.149224e-01	ci left: 3.971571e-04	ci right 4.459301e-04	k: 1162	n:2760000
ZFPM2   2760000 perm   3521 sec   (784 perm/sec)   p_kst 4.210145e-04   p_cons 2.824601e-01   p_joint 5.804348e-04

Joint ci ratio: 9.769713e-02	ci left: 5.524831e-04	ci right 6.095801e-04	k: 1608	n:2770000
Cons ci ratio: 3.753843e-03	ci left: 2.819432e-01	ci right 2.830039e-01	k: 782451	n:2770000
KS ci ratio: 1.145780e-01	ci left: 3.981779e-04	ci right 4.469198e-04	k: 1169	n:2770000
ZFPM2   2770000 perm   3544 sec   (782 perm/sec)   p_kst 4.220217e-04   p_cons 2.824733e-01   p_joint 5.805054e-04

Joint ci ratio: 9.733473e-02	ci left: 5.547071e-04	ci right 6.118092e-04	k: 1620	n:2780000
Cons ci ratio: 3.746889e-03	ci left: 2.819654e-01	ci right 2.830242e-01	k: 785335	n:2780000
KS ci ratio: 1.142367e-01	ci left: 3.991915e-04	ci right 4.479021e-04	k: 1176	n:2780000
ZFPM2   2780000 perm   3566 sec   (779 perm/sec)   p_kst 4.230216e-04   p_cons 2.824946e-01   p_joint 5.827338e-04

Joint ci ratio: 9.712523e-02	ci left: 5.551668e-04	ci right 6.121862e-04	k: 1627	n:2790000
Cons ci ratio: 3.740363e-03	ci left: 2.819453e-01	ci right 2.830021e-01	k: 788101	n:2790000
KS ci ratio: 1.140915e-01	ci left: 3.988053e-04	ci right 4.474027e-04	k: 1179	n:2790000
ZFPM2   2790000 perm   3589 sec   (777 perm/sec)   p_kst 4.225806e-04   p_cons 2.824735e-01   p_joint 5.831541e-04

Joint ci ratio: 9.700616e-02	ci left: 5.545780e-04	ci right 6.114631e-04	k: 1631	n:2800000
Cons ci ratio: 3.733857e-03	ci left: 2.819267e-01	ci right 2.829816e-01	k: 790871	n:2800000
KS ci ratio: 1.139949e-01	ci left: 3.980749e-04	ci right 4.465395e-04	k: 1181	n:2800000
ZFPM2   2800000 perm   3612 sec   (775 perm/sec)   p_kst 4.217857e-04   p_cons 2.824539e-01   p_joint 5.825000e-04

Joint ci ratio: 9.682833e-02	ci left: 5.546879e-04	ci right 6.114741e-04	k: 1637	n:2810000
Cons ci ratio: 3.727232e-03	ci left: 2.819249e-01	ci right 2.829780e-01	k: 793688	n:2810000
KS ci ratio: 1.136588e-01	ci left: 3.990784e-04	ci right 4.475124e-04	k: 1188	n:2810000
ZFPM2   2810000 perm   3636 sec   (773 perm/sec)   p_kst 4.227758e-04   p_cons 2.824512e-01   p_joint 5.825623e-04

Joint ci ratio: 9.673983e-02	ci left: 5.537590e-04	ci right 6.103953e-04	k: 1640	n:2820000
Cons ci ratio: 3.720838e-03	ci left: 2.819019e-01	ci right 2.829531e-01	k: 796445	n:2820000
KS ci ratio: 1.133257e-01	ci left: 4.000751e-04	ci right 4.484781e-04	k: 1195	n:2820000
ZFPM2   2820000 perm   3659 sec   (771 perm/sec)   p_kst 4.237589e-04   p_cons 2.824273e-01   p_joint 5.815603e-04

Joint ci ratio: 9.659280e-02	ci left: 5.535263e-04	ci right 6.100479e-04	k: 1645	n:2830000
Cons ci ratio: 3.714340e-03	ci left: 2.818939e-01	ci right 2.829433e-01	k: 799244	n:2830000
KS ci ratio: 1.131838e-01	ci left: 3.996914e-04	ci right 4.479835e-04	k: 1198	n:2830000
ZFPM2   2830000 perm   3682 sec   (769 perm/sec)   p_kst 4.233216e-04   p_cons 2.824184e-01   p_joint 5.812721e-04

Joint ci ratio: 9.647567e-02	ci left: 5.529517e-04	ci right 6.093423e-04	k: 1649	n:2840000
Cons ci ratio: 3.707828e-03	ci left: 2.818913e-01	ci right 2.829387e-01	k: 802058	n:2840000
KS ci ratio: 1.131367e-01	ci left: 3.986262e-04	ci right 4.467682e-04	k: 1199	n:2840000
ZFPM2   2840000 perm   3705 sec   (766 perm/sec)   p_kst 4.221831e-04   p_cons 2.824148e-01   p_joint 5.806338e-04

Joint ci ratio: 9.635898e-02	ci left: 5.523812e-04	ci right 6.086416e-04	k: 1653	n:2850000
Cons ci ratio: 3.701458e-03	ci left: 2.818767e-01	ci right 2.829223e-01	k: 804838	n:2850000
KS ci ratio: 1.129017e-01	ci left: 3.989323e-04	ci right 4.470045e-04	k: 1204	n:2850000
ZFPM2   2850000 perm   3729 sec   (764 perm/sec)   p_kst 4.224561e-04   p_cons 2.823993e-01   p_joint 5.800000e-04

Joint ci ratio: 9.621367e-02	ci left: 5.521559e-04	ci right 6.083038e-04	k: 1658	n:2860000
Cons ci ratio: 3.694883e-03	ci left: 2.818885e-01	ci right 2.829323e-01	k: 807693	n:2860000
KS ci ratio: 1.126682e-01	ci left: 3.992364e-04	ci right 4.472391e-04	k: 1209	n:2860000
ZFPM2   2860000 perm   3753 sec   (762 perm/sec)   p_kst 4.227273e-04   p_cons 2.824101e-01   p_joint 5.797203e-04

Joint ci ratio: 9.609792e-02	ci left: 5.515922e-04	ci right 6.076116e-04	k: 1662	n:2870000
Cons ci ratio: 3.688605e-03	ci left: 2.818712e-01	ci right 2.829132e-01	k: 810465	n:2870000
KS ci ratio: 1.125753e-01	ci left: 3.985225e-04	ci right 4.463973e-04	k: 1211	n:2870000
ZFPM2   2870000 perm   3777 sec   (760 perm/sec)   p_kst 4.219512e-04   p_cons 2.823920e-01   p_joint 5.790941e-04

Joint ci ratio: 9.586757e-02	ci left: 5.523881e-04	ci right 6.083462e-04	k: 1670	n:2880000
Cons ci ratio: 3.682331e-03	ci left: 2.818572e-01	ci right 2.828974e-01	k: 813246	n:2880000
KS ci ratio: 1.124362e-01	ci left: 3.981511e-04	ci right 4.459183e-04	k: 1214	n:2880000
ZFPM2   2880000 perm   3801 sec   (758 perm/sec)   p_kst 4.215278e-04   p_cons 2.823771e-01   p_joint 5.798611e-04

Joint ci ratio: 9.575307e-02	ci left: 5.518276e-04	ci right 6.076585e-04	k: 1674	n:2890000
Cons ci ratio: 3.676149e-03	ci left: 2.818368e-01	ci right 2.828751e-01	k: 816008	n:2890000
KS ci ratio: 1.122977e-01	ci left: 3.977823e-04	ci right 4.454425e-04	k: 1217	n:2890000
ZFPM2   2890000 perm   3825 sec   (755 perm/sec)   p_kst 4.211073e-04   p_cons 2.823557e-01   p_joint 5.792388e-04

Joint ci ratio: 9.561048e-02	ci left: 5.516077e-04	ci right 6.073285e-04	k: 1679	n:2900000
Cons ci ratio: 3.669726e-03	ci left: 2.818464e-01	ci right 2.828830e-01	k: 818857	n:2900000
KS ci ratio: 1.121137e-01	ci left: 3.977512e-04	ci right 4.453245e-04	k: 1221	n:2900000
ZFPM2   2900000 perm   3850 sec   (753 perm/sec)   p_kst 4.210345e-04   p_cons 2.823645e-01   p_joint 5.789655e-04

Joint ci ratio: 9.555369e-02	ci left: 5.503829e-04	ci right 6.059452e-04	k: 1681	n:2910000
Cons ci ratio: 3.663255e-03	ci left: 2.818650e-01	ci right 2.828997e-01	k: 821732	n:2910000
KS ci ratio: 1.120222e-01	ci left: 3.970524e-04	ci right 4.445008e-04	k: 1223	n:2910000
ZFPM2   2910000 perm   3874 sec   (751 perm/sec)   p_kst 4.202749e-04   p_cons 2.823821e-01   p_joint 5.776632e-04

Joint ci ratio: 9.544030e-02	ci left: 5.498352e-04	ci right 6.052726e-04	k: 1685	n:2920000
Cons ci ratio: 3.656807e-03	ci left: 2.818847e-01	ci right 2.829177e-01	k: 824611	n:2920000
KS ci ratio: 1.117031e-01	ci left: 3.980228e-04	ci right 4.454428e-04	k: 1230	n:2920000
ZFPM2   2920000 perm   3899 sec   (749 perm/sec)   p_kst 4.212329e-04   p_cons 2.824010e-01   p_joint 5.770548e-04

Joint ci ratio: 9.042718e-02	ci left: 6.119667e-04	ci right 6.702563e-04	k: 1877	n:2930000
Cons ci ratio: 3.650352e-03	ci left: 2.819088e-01	ci right 2.829401e-01	k: 827503	n:2930000
KS ci ratio: 1.114770e-01	ci left: 3.983233e-04	ci right 4.456766e-04	k: 1235	n:2930000
ZFPM2   2930000 perm   3923 sec   (747 perm/sec)   p_kst 4.215017e-04   p_cons 2.824242e-01   p_joint 6.406143e-04

Joint ci ratio: 9.023516e-02	ci left: 6.125448e-04	ci right 6.707590e-04	k: 1885	n:2940000
Cons ci ratio: 3.644039e-03	ci left: 2.819208e-01	ci right 2.829504e-01	k: 830360	n:2940000
KS ci ratio: 1.112073e-01	ci left: 3.989524e-04	ci right 4.462583e-04	k: 1241	n:2940000
ZFPM2   2940000 perm   3947 sec   (745 perm/sec)   p_kst 4.221088e-04   p_cons 2.824354e-01   p_joint 6.411565e-04

Joint ci ratio: 9.006816e-02	ci left: 6.127877e-04	ci right 6.709116e-04	k: 1892	n:2950000
Cons ci ratio: 3.637837e-03	ci left: 2.819239e-01	ci right 2.829517e-01	k: 833191	n:2950000
KS ci ratio: 1.109841e-01	ci left: 3.992479e-04	ci right 4.464876e-04	k: 1246	n:2950000
ZFPM2   2950000 perm   3972 sec   (743 perm/sec)   p_kst 4.223729e-04   p_cons 2.824376e-01   p_joint 6.413559e-04

Joint ci ratio: 8.992577e-02	ci left: 6.126989e-04	ci right 6.707176e-04	k: 1898	n:2960000
Cons ci ratio: 3.631948e-03	ci left: 2.818957e-01	ci right 2.829217e-01	k: 835929	n:2960000
KS ci ratio: 1.108066e-01	ci left: 3.992129e-04	ci right 4.463680e-04	k: 1250	n:2960000
ZFPM2   2960000 perm   3997 sec   (741 perm/sec)   p_kst 4.222973e-04   p_cons 2.824084e-01   p_joint 6.412162e-04

Joint ci ratio: 8.976048e-02	ci left: 6.129399e-04	ci right 6.708692e-04	k: 1905	n:2970000
Cons ci ratio: 3.625715e-03	ci left: 2.819093e-01	ci right 2.829336e-01	k: 838791	n:2970000
KS ci ratio: 1.106740e-01	ci left: 3.988509e-04	ci right 4.459031e-04	k: 1253	n:2970000
ZFPM2   2970000 perm   4022 sec   (739 perm/sec)   p_kst 4.218855e-04   p_cons 2.824212e-01   p_joint 6.414141e-04

Joint ci ratio: 8.947916e-02	ci left: 6.148197e-04	ci right 6.727350e-04	k: 1917	n:2980000
Cons ci ratio: 3.619723e-03	ci left: 2.818993e-01	ci right 2.829219e-01	k: 841583	n:2980000
KS ci ratio: 1.105419e-01	ci left: 3.984913e-04	ci right 4.454414e-04	k: 1256	n:2980000
ZFPM2   2980000 perm   4046 sec   (736 perm/sec)   p_kst 4.214765e-04   p_cons 2.824104e-01   p_joint 6.432886e-04

Joint ci ratio: 8.933953e-02	ci left: 6.147252e-04	ci right 6.725366e-04	k: 1923	n:2990000
Cons ci ratio: 3.613808e-03	ci left: 2.818841e-01	ci right 2.829049e-01	k: 844359	n:2990000
KS ci ratio: 1.103664e-01	ci left: 3.984594e-04	ci right 4.453263e-04	k: 1260	n:2990000
ZFPM2   2990000 perm   4071 sec   (735 perm/sec)   p_kst 4.214047e-04   p_cons 2.823943e-01   p_joint 6.431438e-04

Joint ci ratio: 8.917745e-02	ci left: 6.149574e-04	ci right 6.726802e-04	k: 1930	n:3000000
Cons ci ratio: 3.608053e-03	ci left: 2.818543e-01	ci right 2.828734e-01	k: 847091	n:3000000
KS ci ratio: 1.101918e-01	ci left: 3.984278e-04	ci right 4.452120e-04	k: 1264	n:3000000
ZFPM2   3000000 perm   4096 sec   (732 perm/sec)   p_kst 4.213333e-04   p_cons 2.823637e-01   p_joint 6.433333e-04

Joint ci ratio: 8.903923e-02	ci left: 6.148633e-04	ci right 6.724831e-04	k: 1936	n:3010000
Cons ci ratio: 3.602047e-03	ci left: 2.818560e-01	ci right 2.828734e-01	k: 849917	n:3010000
KS ci ratio: 1.101048e-01	ci left: 3.977502e-04	ci right 4.444157e-04	k: 1266	n:3010000
ZFPM2   3010000 perm   4121 sec   (730 perm/sec)   p_kst 4.205980e-04   p_cons 2.823645e-01   p_joint 6.431894e-04

Joint ci ratio: 8.897041e-02	ci left: 6.137986e-04	ci right 6.712719e-04	k: 1939	n:3020000
Cons ci ratio: 3.596081e-03	ci left: 2.818566e-01	ci right 2.828723e-01	k: 852740	n:3020000
KS ci ratio: 1.099747e-01	ci left: 3.973992e-04	ci right 4.439648e-04	k: 1269	n:3020000
ZFPM2   3020000 perm   4146 sec   (728 perm/sec)   p_kst 4.201987e-04   p_cons 2.823642e-01   p_joint 6.420530e-04

Joint ci ratio: 8.883315e-02	ci left: 6.137090e-04	ci right 6.710807e-04	k: 1945	n:3030000
Cons ci ratio: 3.590281e-03	ci left: 2.818417e-01	ci right 2.828557e-01	k: 855516	n:3030000
KS ci ratio: 1.098883e-01	ci left: 3.967296e-04	ci right 4.431778e-04	k: 1271	n:3030000
ZFPM2   3030000 perm   4170 sec   (727 perm/sec)   p_kst 4.194719e-04   p_cons 2.823485e-01   p_joint 6.419142e-04

Joint ci ratio: 8.869653e-02	ci left: 6.136201e-04	ci right 6.708906e-04	k: 1951	n:3040000
Cons ci ratio: 3.584588e-03	ci left: 2.818181e-01	ci right 2.828304e-01	k: 858265	n:3040000
KS ci ratio: 1.096729e-01	ci left: 3.970241e-04	ci right 4.434098e-04	k: 1276	n:3040000
ZFPM2   3040000 perm   4194 sec   (725 perm/sec)   p_kst 4.197368e-04   p_cons 2.823240e-01   p_joint 6.417763e-04

Joint ci ratio: 8.865119e-02	ci left: 6.122494e-04	ci right 6.693613e-04	k: 1953	n:3050000
Cons ci ratio: 3.578696e-03	ci left: 2.818201e-01	ci right 2.828308e-01	k: 861092	n:3050000
KS ci ratio: 1.095443e-01	ci left: 3.966790e-04	ci right 4.429666e-04	k: 1279	n:3050000
ZFPM2   3050000 perm   4219 sec   (723 perm/sec)   p_kst 4.193443e-04   p_cons 2.823252e-01   p_joint 6.403279e-04

Joint ci ratio: 8.856062e-02	ci left: 6.115268e-04	ci right 6.685100e-04	k: 1957	n:3060000
Cons ci ratio: 3.572634e-03	ci left: 2.818447e-01	ci right 2.828537e-01	k: 863988	n:3060000
KS ci ratio: 1.094162e-01	ci left: 3.963362e-04	ci right 4.425262e-04	k: 1282	n:3060000
ZFPM2   3060000 perm   4244 sec   (721 perm/sec)   p_kst 4.189542e-04   p_cons 2.823490e-01   p_joint 6.395425e-04

Joint ci ratio: 8.920122e-02	ci left: 6.006169e-04	ci right 6.570094e-04	k: 1929	n:3070000
Cons ci ratio: 3.566686e-03	ci left: 2.818597e-01	ci right 2.828671e-01	k: 866855	n:3070000
KS ci ratio: 1.092885e-01	ci left: 3.959957e-04	ci right 4.420887e-04	k: 1285	n:3070000
ZFPM2   3070000 perm   4269 sec   (719 perm/sec)   p_kst 4.185668e-04   p_cons 2.823632e-01   p_joint 6.283388e-04

Joint ci ratio: 8.901689e-02	ci left: 6.012064e-04	ci right 6.575315e-04	k: 1937	n:3080000
Cons ci ratio: 3.560910e-03	ci left: 2.818584e-01	ci right 2.828641e-01	k: 869672	n:3080000
KS ci ratio: 1.091189e-01	ci left: 3.959732e-04	ci right 4.419875e-04	k: 1289	n:3080000
ZFPM2   3080000 perm   4293 sec   (717 perm/sec)   p_kst 4.185065e-04   p_cons 2.823610e-01   p_joint 6.288961e-04

Joint ci ratio: 8.890230e-02	ci left: 6.008429e-04	ci right 6.570577e-04	k: 1942	n:3090000
Cons ci ratio: 3.555227e-03	ci left: 2.818496e-01	ci right 2.828537e-01	k: 872466	n:3090000
KS ci ratio: 1.089502e-01	ci left: 3.959510e-04	ci right 4.418869e-04	k: 1293	n:3090000
ZFPM2   3090000 perm   4319 sec   (715 perm/sec)   p_kst 4.184466e-04   p_cons 2.823515e-01   p_joint 6.284790e-04

Joint ci ratio: 8.941033e-02	ci left: 5.919660e-04	ci right 6.476834e-04	k: 1920	n:3100000
Cons ci ratio: 3.549560e-03	ci left: 2.818422e-01	ci right 2.828447e-01	k: 875264	n:3100000
KS ci ratio: 1.088661e-01	ci left: 3.953013e-04	ci right 4.411242e-04	k: 1295	n:3100000
ZFPM2   3100000 perm   4344 sec   (714 perm/sec)   p_kst 4.177419e-04   p_cons 2.823432e-01   p_joint 6.193548e-04

Joint ci ratio: 8.969117e-02	ci left: 5.862904e-04	ci right 6.416560e-04	k: 1908	n:3110000
Cons ci ratio: 3.543870e-03	ci left: 2.818406e-01	ci right 2.828415e-01	k: 878080	n:3110000
KS ci ratio: 1.084900e-01	ci left: 3.968455e-04	ci right 4.426783e-04	k: 1304	n:3110000
ZFPM2   3110000 perm   4369 sec   (712 perm/sec)   p_kst 4.192926e-04   p_cons 2.823408e-01   p_joint 6.135048e-04

Joint ci ratio: 8.959738e-02	ci left: 5.856645e-04	ci right 6.409102e-04	k: 1912	n:3120000
Cons ci ratio: 3.538115e-03	ci left: 2.818496e-01	ci right 2.828489e-01	k: 880929	n:3120000
KS ci ratio: 1.083655e-01	ci left: 3.965090e-04	ci right 4.422471e-04	k: 1307	n:3120000
ZFPM2   3120000 perm   4394 sec   (710 perm/sec)   p_kst 4.189103e-04   p_cons 2.823490e-01   p_joint 6.128205e-04

Joint ci ratio: 8.938732e-02	ci left: 5.866045e-04	ci right 6.418022e-04	k: 1921	n:3130000
Cons ci ratio: 3.532448e-03	ci left: 2.818515e-01	ci right 2.828492e-01	k: 883756	n:3130000
KS ci ratio: 1.080356e-01	ci left: 3.977289e-04	ci right 4.434592e-04	k: 1315	n:3130000
ZFPM2   3130000 perm   4420 sec   (708 perm/sec)   p_kst 4.201278e-04   p_cons 2.823502e-01   p_joint 6.137380e-04

Joint ci ratio: 8.929448e-02	ci left: 5.859817e-04	ci right 6.410606e-04	k: 1925	n:3140000
Cons ci ratio: 3.526765e-03	ci left: 2.818585e-01	ci right 2.828546e-01	k: 886599	n:3140000
KS ci ratio: 1.079536e-01	ci left: 3.970820e-04	ci right 4.427010e-04	k: 1317	n:3140000
ZFPM2   3140000 perm   4446 sec   (706 perm/sec)   p_kst 4.194268e-04   p_cons 2.823564e-01   p_joint 6.130573e-04

Joint ci ratio: 8.917882e-02	ci left: 5.856733e-04	ci right 6.406482e-04	k: 1930	n:3150000
Cons ci ratio: 3.521103e-03	ci left: 2.818661e-01	ci right 2.828606e-01	k: 889444	n:3150000
KS ci ratio: 1.078718e-01	ci left: 3.964392e-04	ci right 4.419477e-04	k: 1319	n:3150000
ZFPM2   3150000 perm   4472 sec   (704 perm/sec)   p_kst 4.187302e-04   p_cons 2.823632e-01   p_joint 6.126984e-04

Joint ci ratio: 8.906360e-02	ci left: 5.853669e-04	ci right 6.402384e-04	k: 1935	n:3160000
Cons ci ratio: 3.515606e-03	ci left: 2.818578e-01	ci right 2.828508e-01	k: 892239	n:3160000
KS ci ratio: 1.078310e-01	ci left: 3.954926e-04	ci right 4.408741e-04	k: 1320	n:3160000
ZFPM2   3160000 perm   4497 sec   (703 perm/sec)   p_kst 4.177215e-04   p_cons 2.823541e-01   p_joint 6.123418e-04

Joint ci ratio: 8.881158e-02	ci left: 5.869132e-04	ci right 6.417659e-04	k: 1946	n:3170000
Cons ci ratio: 3.509820e-03	ci left: 2.818859e-01	ci right 2.828773e-01	k: 895149	n:3170000
KS ci ratio: 1.074251e-01	ci left: 3.973146e-04	ci right 4.427228e-04	k: 1330	n:3170000
ZFPM2   3170000 perm   4525 sec   (701 perm/sec)   p_kst 4.195584e-04   p_cons 2.823814e-01   p_joint 6.138801e-04

Joint ci ratio: 8.869778e-02	ci left: 5.866050e-04	ci right 6.413550e-04	k: 1951	n:3180000
Cons ci ratio: 3.504183e-03	ci left: 2.818999e-01	ci right 2.828898e-01	k: 898015	n:3180000
KS ci ratio: 1.073848e-01	ci left: 3.963712e-04	ci right 4.416535e-04	k: 1331	n:3180000
ZFPM2   3180000 perm   4551 sec   (699 perm/sec)   p_kst 4.185535e-04   p_cons 2.823947e-01   p_joint 6.135220e-04

Joint ci ratio: 8.849397e-02	ci left: 5.875250e-04	ci right 6.422283e-04	k: 1960	n:3190000
Cons ci ratio: 3.498613e-03	ci left: 2.819092e-01	ci right 2.828975e-01	k: 900866	n:3190000
KS ci ratio: 1.071838e-01	ci left: 3.966540e-04	ci right 4.418784e-04	k: 1336	n:3190000
ZFPM2   3190000 perm   4580 sec   (696 perm/sec)   p_kst 4.188088e-04   p_cons 2.824031e-01   p_joint 6.144201e-04

Joint ci ratio: 8.826914e-02	ci left: 5.887449e-04	ci right 6.434153e-04	k: 1970	n:3200000
Cons ci ratio: 3.492943e-03	ci left: 2.819331e-01	ci right 2.829198e-01	k: 903764	n:3200000
KS ci ratio: 1.069043e-01	ci left: 3.975434e-04	ci right 4.427436e-04	k: 1343	n:3200000
ZFPM2   3200000 perm   4607 sec   (695 perm/sec)   p_kst 4.196875e-04   p_cons 2.824262e-01   p_joint 6.156250e-04

Joint ci ratio: 8.815741e-02	ci left: 5.884341e-04	ci right 6.430029e-04	k: 1975	n:3210000
Cons ci ratio: 3.487547e-03	ci left: 2.819281e-01	ci right 2.829134e-01	k: 906570	n:3210000
KS ci ratio: 1.067456e-01	ci left: 3.975178e-04	ci right 4.426437e-04	k: 1347	n:3210000
ZFPM2   3210000 perm   4633 sec   (693 perm/sec)   p_kst 4.196262e-04   p_cons 2.824206e-01   p_joint 6.152648e-04

Joint ci ratio: 8.800166e-02	ci left: 5.887327e-04	ci right 6.432278e-04	k: 1982	n:3220000
Cons ci ratio: 3.482165e-03	ci left: 2.819245e-01	ci right 2.829082e-01	k: 909380	n:3220000
KS ci ratio: 1.065875e-01	ci left: 3.974924e-04	ci right 4.425444e-04	k: 1351	n:3220000
ZFPM2   3220000 perm   4659 sec   (691 perm/sec)   p_kst 4.195652e-04   p_cons 2.824161e-01   p_joint 6.155280e-04

Joint ci ratio: 8.773652e-02	ci left: 5.905435e-04	ci right 6.450331e-04	k: 1994	n:3230000
Cons ci ratio: 3.476715e-03	ci left: 2.819317e-01	ci right 2.829139e-01	k: 912225	n:3230000
KS ci ratio: 1.064302e-01	ci left: 3.974671e-04	ci right 4.424457e-04	k: 1355	n:3230000
ZFPM2   3230000 perm   4685 sec   (689 perm/sec)   p_kst 4.195046e-04   p_cons 2.824226e-01   p_joint 6.173375e-04

Joint ci ratio: 8.764872e-02	ci left: 5.899283e-04	ci right 6.443039e-04	k: 1998	n:3240000
Cons ci ratio: 3.471407e-03	ci left: 2.819253e-01	ci right 2.829060e-01	k: 915026	n:3240000
KS ci ratio: 1.061955e-01	ci left: 3.980430e-04	ci right 4.429812e-04	k: 1361	n:3240000
ZFPM2   3240000 perm   4711 sec   (688 perm/sec)   p_kst 4.200617e-04   p_cons 2.824154e-01   p_joint 6.166667e-04

Joint ci ratio: 8.751748e-02	ci left: 5.899189e-04	ci right 6.442080e-04	k: 2004	n:3250000
Cons ci ratio: 3.466236e-03	ci left: 2.819057e-01	ci right 2.828848e-01	k: 917784	n:3250000
KS ci ratio: 1.060399e-01	ci left: 3.980163e-04	ci right 4.428816e-04	k: 1365	n:3250000
ZFPM2   3250000 perm   4739 sec   (686 perm/sec)   p_kst 4.200000e-04   p_cons 2.823951e-01   p_joint 6.166154e-04

Joint ci ratio: 8.844943e-02	ci left: 5.755092e-04	ci right 6.290653e-04	k: 1962	n:3260000
Cons ci ratio: 3.460816e-03	ci left: 2.819181e-01	ci right 2.828958e-01	k: 920646	n:3260000
KS ci ratio: 1.058464e-01	ci left: 3.982885e-04	ci right 4.430974e-04	k: 1370	n:3260000
ZFPM2   3260000 perm   4766 sec   (684 perm/sec)   p_kst 4.202454e-04   p_cons 2.824067e-01   p_joint 6.018405e-04

Joint ci ratio: 8.833702e-02	ci left: 5.752444e-04	ci right 6.287044e-04	k: 1967	n:3270000
Cons ci ratio: 3.455578e-03	ci left: 2.819121e-01	ci right 2.828883e-01	k: 923448	n:3270000
KS ci ratio: 1.056923e-01	ci left: 3.982614e-04	ci right 4.429980e-04	k: 1374	n:3270000
ZFPM2   3270000 perm   4793 sec   (682 perm/sec)   p_kst 4.201835e-04   p_cons 2.824000e-01   p_joint 6.015291e-04

Joint ci ratio: 8.824741e-02	ci left: 5.746832e-04	ci right 6.280341e-04	k: 1971	n:3280000
Cons ci ratio: 3.450353e-03	ci left: 2.819074e-01	ci right 2.828820e-01	k: 926254	n:3280000
KS ci ratio: 1.056539e-01	ci left: 3.973440e-04	ci right 4.419603e-04	k: 1375	n:3280000
ZFPM2   3280000 perm   4820 sec   (681 perm/sec)   p_kst 4.192073e-04   p_cons 2.823945e-01   p_joint 6.009146e-04

Joint ci ratio: 8.811346e-02	ci left: 5.747200e-04	ci right 6.279891e-04	k: 1977	n:3290000
Cons ci ratio: 3.444953e-03	ci left: 2.819261e-01	ci right 2.828992e-01	k: 929137	n:3290000
KS ci ratio: 1.054625e-01	ci left: 3.976159e-04	ci right 4.421768e-04	k: 1380	n:3290000
ZFPM2   3290000 perm   4846 sec   (679 perm/sec)   p_kst 4.194529e-04   p_cons 2.824125e-01   p_joint 6.009119e-04

Joint ci ratio: 8.795795e-02	ci left: 5.750529e-04	ci right 6.282540e-04	k: 1984	n:3300000
Cons ci ratio: 3.439753e-03	ci left: 2.819240e-01	ci right 2.828957e-01	k: 931952	n:3300000
KS ci ratio: 1.052721e-01	ci left: 3.978863e-04	ci right 4.423920e-04	k: 1385	n:3300000
ZFPM2   3300000 perm   4873 sec   (677 perm/sec)   p_kst 4.196970e-04   p_cons 2.824097e-01   p_joint 6.012121e-04

Joint ci ratio: 8.782531e-02	ci left: 5.750884e-04	ci right 6.282085e-04	k: 1990	n:3310000
Cons ci ratio: 3.434694e-03	ci left: 2.819081e-01	ci right 2.828784e-01	k: 934721	n:3310000
KS ci ratio: 1.051962e-01	ci left: 3.972725e-04	ci right 4.416756e-04	k: 1387	n:3310000
ZFPM2   3310000 perm   4901 sec   (675 perm/sec)   p_kst 4.190332e-04   p_cons 2.823931e-01   p_joint 6.012085e-04

Joint ci ratio: 8.775926e-02	ci left: 5.742400e-04	ci right 6.272397e-04	k: 1993	n:3320000
Cons ci ratio: 3.429507e-03	ci left: 2.819101e-01	ci right 2.828788e-01	k: 937549	n:3320000
KS ci ratio: 1.051206e-01	ci left: 3.966625e-04	ci right 4.409635e-04	k: 1389	n:3320000
ZFPM2   3320000 perm   4928 sec   (674 perm/sec)   p_kst 4.183735e-04   p_cons 2.823943e-01   p_joint 6.003012e-04

Joint ci ratio: 8.767140e-02	ci left: 5.736904e-04	ci right 6.265837e-04	k: 1997	n:3330000
Cons ci ratio: 3.424318e-03	ci left: 2.819150e-01	ci right 2.828823e-01	k: 940387	n:3330000
KS ci ratio: 1.051206e-01	ci left: 3.954713e-04	ci right 4.396393e-04	k: 1389	n:3330000
ZFPM2   3330000 perm   4956 sec   (672 perm/sec)   p_kst 4.171171e-04   p_cons 2.823985e-01   p_joint 5.996997e-04

Joint ci ratio: 8.749638e-02	ci left: 5.743155e-04	ci right 6.271553e-04	k: 2005	n:3340000
Cons ci ratio: 3.419228e-03	ci left: 2.819110e-01	ci right 2.828768e-01	k: 943195	n:3340000
KS ci ratio: 1.049321e-01	ci left: 3.957449e-04	ci right 4.398593e-04	k: 1394	n:3340000
ZFPM2   3340000 perm   4983 sec   (670 perm/sec)   p_kst 4.173653e-04   p_cons 2.823937e-01   p_joint 6.002994e-04

Joint ci ratio: 8.738755e-02	ci left: 5.740610e-04	ci right 6.268084e-04	k: 2010	n:3350000
Cons ci ratio: 3.414279e-03	ci left: 2.818929e-01	ci right 2.828573e-01	k: 945956	n:3350000
KS ci ratio: 1.047445e-01	ci left: 3.960170e-04	ci right 4.400779e-04	k: 1399	n:3350000
ZFPM2   3350000 perm   5011 sec   (669 perm/sec)   p_kst 4.176119e-04   p_cons 2.823749e-01   p_joint 6.000000e-04

Joint ci ratio: 8.725748e-02	ci left: 5.740993e-04	ci right 6.267676e-04	k: 2016	n:3360000
Cons ci ratio: 3.409189e-03	ci left: 2.818943e-01	ci right 2.828573e-01	k: 948782	n:3360000
KS ci ratio: 1.044836e-01	ci left: 3.968672e-04	ci right 4.409060e-04	k: 1406	n:3360000
ZFPM2   3360000 perm   5039 sec   (667 perm/sec)   p_kst 4.184524e-04   p_cons 2.823756e-01   p_joint 6.000000e-04

Joint ci ratio: 8.719270e-02	ci left: 5.732665e-04	ci right 6.258174e-04	k: 2019	n:3370000
Cons ci ratio: 3.404316e-03	ci left: 2.818726e-01	ci right 2.828341e-01	k: 951530	n:3370000
KS ci ratio: 1.042615e-01	ci left: 3.974235e-04	ci right 4.414245e-04	k: 1412	n:3370000
ZFPM2   3370000 perm   5066 sec   (665 perm/sec)   p_kst 4.189911e-04   p_cons 2.823531e-01   p_joint 5.991098e-04

Joint ci ratio: 8.892760e-02	ci left: 5.490013e-04	ci right 6.003813e-04	k: 1941	n:3380000
Cons ci ratio: 3.399275e-03	ci left: 2.818734e-01	ci right 2.828335e-01	k: 954354	n:3380000
KS ci ratio: 1.041510e-01	ci left: 3.971121e-04	ci right 4.410292e-04	k: 1415	n:3380000
ZFPM2   3380000 perm   5094 sec   (664 perm/sec)   p_kst 4.186391e-04   p_cons 2.823533e-01   p_joint 5.742604e-04

Joint ci ratio: 8.883618e-02	ci left: 5.485356e-04	ci right 5.998164e-04	k: 1945	n:3390000
Cons ci ratio: 3.394183e-03	ci left: 2.818831e-01	ci right 2.828418e-01	k: 957208	n:3390000
KS ci ratio: 1.040775e-01	ci left: 3.965153e-04	ci right 4.403336e-04	k: 1417	n:3390000
ZFPM2   3390000 perm   5121 sec   (662 perm/sec)   p_kst 4.179941e-04   p_cons 2.823622e-01   p_joint 5.737463e-04

Joint ci ratio: 8.860875e-02	ci left: 5.497982e-04	ci right 6.010586e-04	k: 1955	n:3400000
Cons ci ratio: 3.389160e-03	ci left: 2.818871e-01	ci right 2.828444e-01	k: 960043	n:3400000
KS ci ratio: 1.038945e-01	ci left: 3.967814e-04	ci right 4.405473e-04	k: 1422	n:3400000
ZFPM2   3400000 perm   5148 sec   (660 perm/sec)   p_kst 4.182353e-04   p_cons 2.823656e-01   p_joint 5.750000e-04

Joint ci ratio: 8.847316e-02	ci left: 5.499064e-04	ci right 6.010945e-04	k: 1961	n:3410000
Cons ci ratio: 3.384254e-03	ci left: 2.818797e-01	ci right 2.828356e-01	k: 962839	n:3410000
KS ci ratio: 1.037125e-01	ci left: 3.970461e-04	ci right 4.407597e-04	k: 1427	n:3410000
ZFPM2   3410000 perm   5176 sec   (659 perm/sec)   p_kst 4.184751e-04   p_cons 2.823575e-01   p_joint 5.750733e-04

Joint ci ratio: 8.840563e-02	ci left: 5.491563e-04	ci right 6.002335e-04	k: 1964	n:3420000
Cons ci ratio: 3.379100e-03	ci left: 2.819048e-01	ci right 2.828593e-01	k: 965746	n:3420000
KS ci ratio: 1.036399e-01	ci left: 3.964547e-04	ci right 4.400709e-04	k: 1429	n:3420000
ZFPM2   3420000 perm   5203 sec   (657 perm/sec)   p_kst 4.178363e-04   p_cons 2.823819e-01   p_joint 5.742690e-04

Joint ci ratio: 8.829338e-02	ci left: 5.489808e-04	ci right 5.999735e-04	k: 1969	n:3430000
Cons ci ratio: 3.374128e-03	ci left: 2.819105e-01	ci right 2.828636e-01	k: 968587	n:3430000
KS ci ratio: 1.034592e-01	ci left: 3.967189e-04	ci right 4.402834e-04	k: 1434	n:3430000
ZFPM2   3430000 perm   5231 sec   (656 perm/sec)   p_kst 4.180758e-04   p_cons 2.823869e-01   p_joint 5.740525e-04

Joint ci ratio: 8.811462e-02	ci left: 5.496592e-04	ci right 6.006062e-04	k: 1977	n:3440000
Cons ci ratio: 3.369116e-03	ci left: 2.819237e-01	ci right 2.828755e-01	k: 971454	n:3440000
KS ci ratio: 1.033153e-01	ci left: 3.966983e-04	ci right 4.401963e-04	k: 1438	n:3440000
ZFPM2   3440000 perm   5259 sec   (654 perm/sec)   p_kst 4.180233e-04   p_cons 2.823994e-01   p_joint 5.747093e-04

Joint ci ratio: 8.793694e-02	ci left: 5.503338e-04	ci right 6.012352e-04	k: 1985	n:3450000
Cons ci ratio: 3.364358e-03	ci left: 2.819091e-01	ci right 2.828594e-01	k: 974225	n:3450000
KS ci ratio: 1.031006e-01	ci left: 3.972427e-04	ci right 4.407044e-04	k: 1444	n:3450000
ZFPM2   3450000 perm   5287 sec   (653 perm/sec)   p_kst 4.185507e-04   p_cons 2.823841e-01   p_joint 5.753623e-04

Joint ci ratio: 8.800354e-02	ci left: 5.478952e-04	ci right 5.986114e-04	k: 1982	n:3460000
Cons ci ratio: 3.359485e-03	ci left: 2.819107e-01	ci right 2.828596e-01	k: 977052	n:3460000
KS ci ratio: 1.030650e-01	ci left: 3.963762e-04	ci right 4.397272e-04	k: 1445	n:3460000
ZFPM2   3460000 perm   5314 sec   (651 perm/sec)   p_kst 4.176301e-04   p_cons 2.823850e-01   p_joint 5.728324e-04

Joint ci ratio: 8.791494e-02	ci left: 5.474436e-04	ci right 5.980644e-04	k: 1986	n:3470000
Cons ci ratio: 3.354888e-03	ci left: 2.818815e-01	ci right 2.828290e-01	k: 979772	n:3470000
KS ci ratio: 1.029227e-01	ci left: 3.963569e-04	ci right 4.396424e-04	k: 1449	n:3470000
ZFPM2   3470000 perm   5343 sec   (649 perm/sec)   p_kst 4.175793e-04   p_cons 2.823550e-01   p_joint 5.723343e-04

Joint ci ratio: 8.802590e-02	ci left: 5.444653e-04	ci right 5.948775e-04	k: 1981	n:3480000
Cons ci ratio: 3.350125e-03	ci left: 2.818748e-01	ci right 2.828210e-01	k: 982570	n:3480000
KS ci ratio: 1.027811e-01	ci left: 3.963378e-04	ci right 4.395580e-04	k: 1453	n:3480000
ZFPM2   3480000 perm   5372 sec   (648 perm/sec)   p_kst 4.175287e-04   p_cons 2.823477e-01   p_joint 5.692529e-04

Joint ci ratio: 8.789296e-02	ci left: 5.445866e-04	ci right 5.949300e-04	k: 1987	n:3490000
Cons ci ratio: 3.345321e-03	ci left: 2.818756e-01	ci right 2.828204e-01	k: 985394	n:3490000
KS ci ratio: 1.026048e-01	ci left: 3.965981e-04	ci right 4.397680e-04	k: 1458	n:3490000
ZFPM2   3490000 perm   5400 sec   (646 perm/sec)   p_kst 4.177650e-04   p_cons 2.823479e-01   p_joint 5.693410e-04

Joint ci ratio: 8.778265e-02	ci left: 5.444279e-04	ci right 5.946901e-04	k: 1992	n:3500000
Cons ci ratio: 3.340502e-03	ci left: 2.818807e-01	ci right 2.828242e-01	k: 988233	n:3500000
KS ci ratio: 1.025346e-01	ci left: 3.960217e-04	ci right 4.390976e-04	k: 1460	n:3500000
ZFPM2   3500000 perm   5428 sec   (645 perm/sec)   p_kst 4.171429e-04   p_cons 2.823523e-01   p_joint 5.691429e-04

Joint ci ratio: 8.762888e-02	ci left: 5.448273e-04	ci right 5.950339e-04	k: 1999	n:3510000
Cons ci ratio: 3.335711e-03	ci left: 2.818850e-01	ci right 2.828271e-01	k: 991069	n:3510000
KS ci ratio: 1.023595e-01	ci left: 3.962814e-04	ci right 4.393076e-04	k: 1465	n:3510000
ZFPM2   3510000 perm   5457 sec   (643 perm/sec)   p_kst 4.173789e-04   p_cons 2.823558e-01   p_joint 5.695157e-04

Joint ci ratio: 8.967089e-02	ci left: 5.182778e-04	ci right 5.672090e-04	k: 1909	n:3520000
Cons ci ratio: 3.331026e-03	ci left: 2.818787e-01	ci right 2.828194e-01	k: 993868	n:3520000
KS ci ratio: 1.022202e-01	ci left: 3.962629e-04	ci right 4.392250e-04	k: 1469	n:3520000
ZFPM2   3520000 perm   5485 sec   (642 perm/sec)   p_kst 4.173295e-04   p_cons 2.823489e-01   p_joint 5.423295e-04

Joint ci ratio: 8.955375e-02	ci left: 5.181943e-04	ci right 5.670504e-04	k: 1914	n:3530000
Cons ci ratio: 3.326408e-03	ci left: 2.818667e-01	ci right 2.828062e-01	k: 996647	n:3530000
KS ci ratio: 1.020468e-01	ci left: 3.965206e-04	ci right 4.394333e-04	k: 1474	n:3530000
ZFPM2   3530000 perm   5513 sec   (640 perm/sec)   p_kst 4.175637e-04   p_cons 2.823363e-01   p_joint 5.422096e-04

Joint ci ratio: 8.932078e-02	ci left: 5.194921e-04	ci right 5.683365e-04	k: 1924	n:3540000
Cons ci ratio: 3.321726e-03	ci left: 2.818650e-01	ci right 2.828031e-01	k: 999462	n:3540000
KS ci ratio: 1.018742e-01	ci left: 3.967769e-04	ci right 4.396404e-04	k: 1479	n:3540000
ZFPM2   3540000 perm   5542 sec   (639 perm/sec)   p_kst 4.177966e-04   p_cons 2.823339e-01   p_joint 5.435028e-04

Joint ci ratio: 8.908962e-02	ci left: 5.207828e-04	ci right 5.696153e-04	k: 1934	n:3550000
Cons ci ratio: 3.317140e-03	ci left: 2.818540e-01	ci right 2.827908e-01	k: 1002244	n:3550000
KS ci ratio: 1.014976e-01	ci left: 3.986791e-04	ci right 4.415793e-04	k: 1490	n:3550000
ZFPM2   3550000 perm   5571 sec   (637 perm/sec)   p_kst 4.197183e-04   p_cons 2.823223e-01   p_joint 5.447887e-04

Joint ci ratio: 8.943721e-02	ci left: 5.152005e-04	ci right 5.637078e-04	k: 1919	n:3560000
Cons ci ratio: 3.312453e-03	ci left: 2.818577e-01	ci right 2.827932e-01	k: 1005078	n:3560000
KS ci ratio: 1.013618e-01	ci left: 3.986543e-04	ci right 4.414910e-04	k: 1494	n:3560000
ZFPM2   3560000 perm   5602 sec   (635 perm/sec)   p_kst 4.196629e-04   p_cons 2.823253e-01   p_joint 5.390449e-04

Joint ci ratio: 8.939071e-02	ci left: 5.143050e-04	ci right 5.627015e-04	k: 1921	n:3570000
Cons ci ratio: 3.307786e-03	ci left: 2.818614e-01	ci right 2.827955e-01	k: 1007912	n:3570000
KS ci ratio: 1.012941e-01	ci left: 3.980836e-04	ci right 4.408288e-04	k: 1496	n:3570000
ZFPM2   3570000 perm   5632 sec   (634 perm/sec)   p_kst 4.190476e-04   p_cons 2.823283e-01   p_joint 5.380952e-04

Joint ci ratio: 8.911287e-02	ci left: 5.161456e-04	ci right 5.645565e-04	k: 1933	n:3580000
Cons ci ratio: 3.303027e-03	ci left: 2.818787e-01	ci right 2.828116e-01	k: 1010795	n:3580000
KS ci ratio: 1.010244e-01	ci left: 3.991497e-04	ci right 4.418885e-04	k: 1504	n:3580000
ZFPM2   3580000 perm   5662 sec   (632 perm/sec)   p_kst 4.201117e-04   p_cons 2.823450e-01   p_joint 5.399441e-04

Joint ci ratio: 8.929792e-02	ci left: 5.125291e-04	ci right 5.607058e-04	k: 1925	n:3590000
Cons ci ratio: 3.298309e-03	ci left: 2.818934e-01	ci right 2.828250e-01	k: 1013669	n:3590000
KS ci ratio: 1.008570e-01	ci left: 3.993955e-04	ci right 4.420855e-04	k: 1509	n:3590000
ZFPM2   3590000 perm   5690 sec   (631 perm/sec)   p_kst 4.203343e-04   p_cons 2.823591e-01   p_joint 5.362117e-04

Joint ci ratio: 8.922848e-02	ci left: 5.119201e-04	ci right 5.600003e-04	k: 1928	n:3600000
Cons ci ratio: 3.293647e-03	ci left: 2.819036e-01	ci right 2.828339e-01	k: 1016527	n:3600000
KS ci ratio: 1.007570e-01	ci left: 3.990984e-04	ci right 4.417119e-04	k: 1512	n:3600000
ZFPM2   3600000 perm   5720 sec   (629 perm/sec)   p_kst 4.200000e-04   p_cons 2.823686e-01   p_joint 5.355556e-04

Joint ci ratio: 8.918230e-02	ci left: 5.110437e-04	ci right 5.590154e-04	k: 1930	n:3610000
Cons ci ratio: 3.289160e-03	ci left: 2.818947e-01	ci right 2.828237e-01	k: 1019316	n:3610000
KS ci ratio: 1.006905e-01	ci left: 3.985329e-04	ci right 4.410563e-04	k: 1514	n:3610000
ZFPM2   3610000 perm   5749 sec   (628 perm/sec)   p_kst 4.193906e-04   p_cons 2.823590e-01   p_joint 5.346260e-04

Joint ci ratio: 8.904406e-02	ci left: 5.112525e-04	ci right 5.591655e-04	k: 1936	n:3620000
Cons ci ratio: 3.284563e-03	ci left: 2.819015e-01	ci right 2.828292e-01	k: 1022162	n:3620000
KS ci ratio: 1.005579e-01	ci left: 3.985092e-04	ci right 4.409706e-04	k: 1518	n:3620000
ZFPM2   3620000 perm   5779 sec   (626 perm/sec)   p_kst 4.193370e-04   p_cons 2.823652e-01   p_joint 5.348066e-04

Joint ci ratio: 8.892937e-02	ci left: 5.111909e-04	ci right 5.590332e-04	k: 1941	n:3630000
Cons ci ratio: 3.279968e-03	ci left: 2.819105e-01	ci right 2.828369e-01	k: 1025016	n:3630000
KS ci ratio: 1.003598e-01	ci left: 3.990227e-04	ci right 4.414503e-04	k: 1524	n:3630000
ZFPM2   3630000 perm   5809 sec   (625 perm/sec)   p_kst 4.198347e-04   p_cons 2.823736e-01   p_joint 5.347107e-04

Joint ci ratio: 8.936791e-02	ci left: 5.046830e-04	ci right 5.521614e-04	k: 1922	n:3640000
Cons ci ratio: 3.275510e-03	ci left: 2.819049e-01	ci right 2.828301e-01	k: 1027817	n:3640000
KS ci ratio: 1.001957e-01	ci left: 3.992657e-04	ci right 4.416455e-04	k: 1529	n:3640000
ZFPM2   3640000 perm   5839 sec   (623 perm/sec)   p_kst 4.200549e-04   p_cons 2.823673e-01   p_joint 5.280220e-04

Joint ci ratio: 8.925196e-02	ci left: 5.046396e-04	ci right 5.520490e-04	k: 1927	n:3650000
Cons ci ratio: 3.270969e-03	ci left: 2.819119e-01	ci right 2.828358e-01	k: 1030664	n:3650000
KS ci ratio: 1.001303e-01	ci left: 3.987060e-04	ci right 4.409972e-04	k: 1531	n:3650000
ZFPM2   3650000 perm   5869 sec   (622 perm/sec)   p_kst 4.194521e-04   p_cons 2.823737e-01   p_joint 5.279452e-04

Joint ci ratio: 8.915953e-02	ci left: 5.043293e-04	ci right 5.516580e-04	k: 1931	n:3660000
Cons ci ratio: 3.266479e-03	ci left: 2.819148e-01	ci right 2.828374e-01	k: 1033496	n:3660000
KS ci ratio: 9.990227e-02	ci left: 3.994814e-04	ci right 4.417527e-04	k: 1538	n:3660000
ZFPM2   3660000 perm   5898 sec   (621 perm/sec)   p_kst 4.202186e-04   p_cons 2.823760e-01   p_joint 5.275956e-04

Outputting figure to mutsig2_images.part000000000194/ZFPM2.6_3488_3660000_0.00042022_0.28238_0.0005276.png
                gene_name: ZFPM2
               theta_stop: 0.100 
                    nperm: 3660000 
                     p_ks: 0.00042 
        ci_ks_bounds_left: 0.00040 
       ci_ks_bounds_right: 0.00044 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.00053 
     ci_joint_bounds_left: 0.00050 
    ci_joint_bounds_right: 0.00055 

Current progress: 36 percent done.
ZFR
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.090336e-01	ci left: 7.243098e-03	ci right 1.105110e-02	k: 90	n:10000
Cons ci ratio: 1.229981e-01	ci left: 8.650182e-02	ci right 9.793702e-02	k: 921	n:10000
KS ci ratio: 2.779532e-01	ci left: 1.678737e-02	ci right 2.229755e-02	k: 194	n:10000
ZFR   10000 perm   2 sec   (5210 perm/sec)   p_kst 1.940000e-02   p_cons 9.210000e-02   p_joint 9.000000e-03

Joint ci ratio: 2.110880e-01	ci left: 1.515911e-02	ci right 1.878328e-02	k: 338	n:20000
Cons ci ratio: 8.931503e-02	ci left: 8.391296e-02	ci right 9.180734e-02	k: 1756	n:20000
KS ci ratio: 1.908840e-01	ci left: 1.867638e-02	ci right 2.266469e-02	k: 412	n:20000
ZFR   20000 perm   4 sec   (4606 perm/sec)   p_kst 2.060000e-02   p_cons 8.780000e-02   p_joint 1.690000e-02

Joint ci ratio: 1.648458e-01	ci left: 1.697330e-02	ci right 2.005429e-02	k: 554	n:30000
Cons ci ratio: 7.270685e-02	ci left: 8.511265e-02	ci right 9.156733e-02	k: 2649	n:30000
KS ci ratio: 1.586925e-01	ci left: 1.834962e-02	ci right 2.154430e-02	k: 597	n:30000
ZFR   30000 perm   7 sec   (4405 perm/sec)   p_kst 1.990000e-02   p_cons 8.830000e-02   p_joint 1.846667e-02

Joint ci ratio: 1.697905e-01	ci left: 1.203263e-02	ci right 1.428886e-02	k: 525	n:40000
Cons ci ratio: 6.262013e-02	ci left: 8.642413e-02	ci right 9.203567e-02	k: 3568	n:40000
KS ci ratio: 1.376379e-01	ci left: 1.850552e-02	ci right 2.126481e-02	k: 794	n:40000
ZFR   40000 perm   9 sec   (4241 perm/sec)   p_kst 1.985000e-02   p_cons 8.920000e-02   p_joint 1.312500e-02

Joint ci ratio: 1.426395e-01	ci left: 1.381771e-02	ci right 1.595915e-02	k: 743	n:50000
Cons ci ratio: 5.592843e-02	ci left: 8.695248e-02	ci right 9.197530e-02	k: 4472	n:50000
KS ci ratio: 1.222163e-01	ci left: 1.892659e-02	ci right 2.140956e-02	k: 1007	n:50000
ZFR   50000 perm   12 sec   (4139 perm/sec)   p_kst 2.014000e-02   p_cons 8.944000e-02   p_joint 1.486000e-02

Joint ci ratio: 1.416668e-01	ci left: 1.170673e-02	ci right 1.350754e-02	k: 755	n:60000
Cons ci ratio: 5.072204e-02	ci left: 8.823238e-02	ci right 9.284065e-02	k: 5431	n:60000
KS ci ratio: 1.117377e-01	ci left: 1.897576e-02	ci right 2.123766e-02	k: 1205	n:60000
ZFR   60000 perm   15 sec   (4049 perm/sec)   p_kst 2.008333e-02   p_cons 9.051667e-02   p_joint 1.258333e-02

Joint ci ratio: 1.387660e-01	ci left: 1.048876e-02	ci right 1.206643e-02	k: 788	n:70000
Cons ci ratio: 4.679462e-02	ci left: 8.897818e-02	ci right 9.325578e-02	k: 6377	n:70000
KS ci ratio: 1.030760e-01	ci left: 1.919845e-02	ci right 2.129873e-02	k: 1416	n:70000
ZFR   70000 perm   18 sec   (3979 perm/sec)   p_kst 2.022857e-02   p_cons 9.110000e-02   p_joint 1.125714e-02

Joint ci ratio: 1.200608e-01	ci left: 1.235992e-02	ci right 1.395067e-02	k: 1051	n:80000
Cons ci ratio: 4.384239e-02	ci left: 8.885472e-02	ci right 9.285001e-02	k: 7267	n:80000
KS ci ratio: 9.624996e-02	ci left: 1.933394e-02	ci right 2.130106e-02	k: 1624	n:80000
ZFR   80000 perm   20 sec   (3918 perm/sec)   p_kst 2.030000e-02   p_cons 9.083750e-02   p_joint 1.313750e-02

Joint ci ratio: 1.119783e-01	ci left: 1.268058e-02	ci right 1.419547e-02	k: 1208	n:90000
Cons ci ratio: 4.296624e-02	ci left: 8.283376e-02	ci right 8.648195e-02	k: 7618	n:90000
KS ci ratio: 8.997292e-02	ci left: 1.972540e-02	ci right 2.159456e-02	k: 1858	n:90000
ZFR   90000 perm   23 sec   (3865 perm/sec)   p_kst 2.064444e-02   p_cons 8.464444e-02   p_joint 1.342222e-02

Joint ci ratio: 1.072206e-01	ci left: 1.248230e-02	ci right 1.390614e-02	k: 1318	n:100000
Cons ci ratio: 4.066321e-02	ci left: 8.329837e-02	ci right 8.676574e-02	k: 8502	n:100000
KS ci ratio: 8.530432e-02	ci left: 1.979710e-02	ci right 2.157086e-02	k: 2067	n:100000
ZFR   100000 perm   26 sec   (3808 perm/sec)   p_kst 2.067000e-02   p_cons 8.502000e-02   p_joint 1.318000e-02

Joint ci ratio: 1.012767e-01	ci left: 1.275542e-02	ci right 1.412496e-02	k: 1477	n:110000
Cons ci ratio: 3.883283e-02	ci left: 8.313309e-02	ci right 8.643430e-02	k: 9325	n:110000
KS ci ratio: 8.127616e-02	ci left: 1.986672e-02	ci right 2.155868e-02	k: 2277	n:110000
ZFR   110000 perm   29 sec   (3754 perm/sec)   p_kst 2.070000e-02   p_cons 8.477273e-02   p_joint 1.342727e-02

Joint ci ratio: 9.914963e-02	ci left: 1.222039e-02	ci right 1.350331e-02	k: 1542	n:120000
Cons ci ratio: 3.725533e-02	ci left: 8.289090e-02	ci right 8.604588e-02	k: 10135	n:120000
KS ci ratio: 7.775360e-02	ci left: 1.993456e-02	ci right 2.155538e-02	k: 2488	n:120000
ZFR   120000 perm   33 sec   (3671 perm/sec)   p_kst 2.073333e-02   p_cons 8.445833e-02   p_joint 1.285000e-02

Outputting figure to mutsig2_images.part000000000194/ZFR.6_3305_120000_0.020733_0.084458_0.01285.png
                gene_name: ZFR
               theta_stop: 0.099 
                    nperm: 120000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.086 
                  p_joint: 0.013 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.014 

Current progress: 38 percent done.
ZFYVE1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.132749e-02	ci left: 7.632436e-01	ci right 7.797979e-01	k: 7716	n:10000
Cons ci ratio: 4.101545e-02	ci left: 4.674681e-01	ci right 4.871451e-01	k: 4773	n:10000
KS ci ratio: 2.477813e-02	ci left: 7.055362e-01	ci right 7.233387e-01	k: 7145	n:10000
ZFYVE1   10000 perm   2 sec   (5507 perm/sec)   p_kst 7.145000e-01   p_cons 4.773000e-01   p_joint 7.716000e-01

Outputting figure to mutsig2_images.part000000000194/ZFYVE1.6_2378_10000_0.7145_0.4773_0.7716.png
                gene_name: ZFYVE1
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 39 percent done.
ZKSCAN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.872667e-02	ci left: 4.961503e-01	ci right 5.158462e-01	k: 5060	n:10000
Cons ci ratio: 5.546629e-02	ci left: 3.237627e-01	ci right 3.423347e-01	k: 3330	n:10000
KS ci ratio: 4.770216e-02	ci left: 3.933658e-01	ci right 4.126907e-01	k: 4030	n:10000
ZKSCAN2   10000 perm   2 sec   (4798 perm/sec)   p_kst 4.030000e-01   p_cons 3.330000e-01   p_joint 5.060000e-01

Outputting figure to mutsig2_images.part000000000194/ZKSCAN2.6_2932_10000_0.403_0.333_0.506.png
                gene_name: ZKSCAN2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 41 percent done.
ZMAT1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.532262e-02	ci left: 8.606980e-01	ci right 8.740872e-01	k: 8675	n:10000
Cons ci ratio: 4.207405e-02	ci left: 4.547863e-01	ci right 4.744343e-01	k: 4646	n:10000
KS ci ratio: 5.574205e-02	ci left: 3.215787e-01	ci right 3.401199e-01	k: 3308	n:10000
ZMAT1   10000 perm   2 sec   (5921 perm/sec)   p_kst 3.308000e-01   p_cons 4.646000e-01   p_joint 8.675000e-01

Outputting figure to mutsig2_images.part000000000194/ZMAT1.6_1941_10000_0.3308_0.4646_0.8675.png
                gene_name: ZMAT1
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.87 
     ci_joint_bounds_left: 0.86 
    ci_joint_bounds_right: 0.87 

Current progress: 43 percent done.
ZDHHC23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.902955e-02	ci left: 8.014606e-01	ci right 8.169589e-01	k: 8093	n:10000
Cons ci ratio: 7.649413e-03	ci left: 9.595321e-01	ci right 9.669949e-01	k: 9634	n:10000
KS ci ratio: 2.913638e-02	ci left: 6.346251e-01	ci right 6.534909e-01	k: 6441	n:10000
ZDHHC23   10000 perm   2 sec   (5744 perm/sec)   p_kst 6.441000e-01   p_cons 9.634000e-01   p_joint 8.093000e-01

Outputting figure to mutsig2_images.part000000000194/ZDHHC23.5_1250_10000_0.6441_0.9634_0.8093.png
                gene_name: ZDHHC23
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.82 

Current progress: 44 percent done.
ZFP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.997394e-02	ci left: 6.214554e-01	ci right 6.404682e-01	k: 6310	n:10000
Cons ci ratio: 5.110775e-02	ci left: 3.608245e-01	ci right 3.798511e-01	k: 3703	n:10000
KS ci ratio: 3.700582e-02	ci left: 5.188592e-01	ci right 5.385241e-01	k: 5287	n:10000
ZFP2   10000 perm   2 sec   (5211 perm/sec)   p_kst 5.287000e-01   p_cons 3.703000e-01   p_joint 6.310000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP2.5_1390_10000_0.5287_0.3703_0.631.png
                gene_name: ZFP2
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 46 percent done.
ZFP57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.633558e-02	ci left: 5.279684e-01	ci right 5.476096e-01	k: 5378	n:10000
Cons ci ratio: 3.437065e-02	ci left: 5.555163e-01	ci right 5.750457e-01	k: 5653	n:10000
KS ci ratio: 3.738618e-02	ci left: 5.137554e-01	ci right 5.334308e-01	k: 5236	n:10000
ZFP57   10000 perm   2 sec   (5461 perm/sec)   p_kst 5.236000e-01   p_cons 5.653000e-01   p_joint 5.378000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP57.5_1627_10000_0.5236_0.5653_0.5378.png
                gene_name: ZFP57
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 48 percent done.
ZFP64
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.182444e-02	ci left: 2.211891e-01	ci right 2.377688e-01	k: 2294	n:10000
Cons ci ratio: 1.485455e-01	ci left: 6.024541e-02	ci right 7.000980e-02	k: 650	n:10000
KS ci ratio: 3.779278e-02	ci left: 5.083526e-01	ci right 5.280368e-01	k: 5182	n:10000
ZFP64   10000 perm   2 sec   (4946 perm/sec)   p_kst 5.182000e-01   p_cons 6.500000e-02   p_joint 2.294000e-01

Joint ci ratio: 5.822618e-02	ci left: 1.793431e-01	ci right 1.901487e-01	k: 3694	n:20000
Cons ci ratio: 1.061783e-01	ci left: 6.040274e-02	ci right 6.722475e-02	k: 1275	n:20000
KS ci ratio: 2.671473e-02	ci left: 5.114479e-01	ci right 5.253467e-01	k: 10368	n:20000
ZFP64   20000 perm   4 sec   (4449 perm/sec)   p_kst 5.184000e-01   p_cons 6.375000e-02   p_joint 1.847000e-01

Joint ci ratio: 4.235960e-02	ci left: 2.173407e-01	ci right 2.267798e-01	k: 6661	n:30000
Cons ci ratio: 8.343572e-02	ci left: 6.566681e-02	ci right 7.141709e-02	k: 2055	n:30000
KS ci ratio: 2.185527e-02	ci left: 5.117607e-01	ci right 5.231026e-01	k: 15523	n:30000
ZFP64   30000 perm   7 sec   (4390 perm/sec)   p_kst 5.174333e-01   p_cons 6.850000e-02   p_joint 2.220333e-01

Outputting figure to mutsig2_images.part000000000194/ZFP64.5_3261_30000_0.51743_0.0685_0.22203.png
                gene_name: ZFP64
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.071 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 49 percent done.
ZFP82
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.026571e-02	ci left: 2.882526e-01	ci right 3.062657e-01	k: 2972	n:10000
Cons ci ratio: 1.169468e-01	ci left: 9.506351e-02	ci right 1.069701e-01	k: 1009	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ZFP82   10000 perm   2 sec   (5687 perm/sec)   p_kst 1   p_cons 1.009000e-01   p_joint 2.972000e-01

Joint ci ratio: 3.667125e-02	ci left: 3.568787e-01	ci right 3.702609e-01	k: 7271	n:20000
Cons ci ratio: 7.820511e-02	ci left: 1.072187e-01	ci right 1.159946e-01	k: 2231	n:20000
KS ci ratio: 1.959804e-04	ci left: 9.998156e-01	ci right 1	k: 20000	n:20000
ZFP82   20000 perm   4 sec   (5062 perm/sec)   p_kst 1   p_cons 1.115500e-01   p_joint 3.635500e-01

Outputting figure to mutsig2_images.part000000000194/ZFP82.5_1615_20000_1_0.11155_0.36355.png
                gene_name: ZFP82
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.11 
     ci_cons_bounds_right: 0.12 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 51 percent done.
ZFX
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.340175e-02	ci left: 8.892362e-01	ci right 9.013324e-01	k: 8954	n:10000
Cons ci ratio: 5.368008e-02	ci left: 3.383613e-01	ci right 3.571274e-01	k: 3477	n:10000
KS ci ratio: 1.809928e-02	ci left: 8.166970e-01	ci right 8.317137e-01	k: 8243	n:10000
ZFX   10000 perm   2 sec   (5405 perm/sec)   p_kst 8.243000e-01   p_cons 3.477000e-01   p_joint 8.954000e-01

Outputting figure to mutsig2_images.part000000000194/ZFX.5_2505_10000_0.8243_0.3477_0.8954.png
                gene_name: ZFX
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 52 percent done.
ZHX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.059204e-02	ci left: 1.505090e-01	ci right 1.648910e-01	k: 1576	n:10000
Cons ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
KS ci ratio: 1.888769e-02	ci left: 8.037956e-01	ci right 8.192225e-01	k: 8116	n:10000
ZHX1   10000 perm   2 sec   (5682 perm/sec)   p_kst 8.116000e-01   p_cons 2.130000e-02   p_joint 1.576000e-01

Joint ci ratio: 7.461996e-02	ci left: 1.167073e-01	ci right 1.258032e-01	k: 2424	n:20000
Cons ci ratio: 1.800525e-01	ci left: 2.106263e-02	ci right 2.527757e-02	k: 462	n:20000
KS ci ratio: 1.414694e-02	ci left: 7.876710e-01	ci right 7.989436e-01	k: 15867	n:20000
ZHX1   20000 perm   4 sec   (4933 perm/sec)   p_kst 7.933500e-01   p_cons 2.310000e-02   p_joint 1.212000e-01

Joint ci ratio: 6.529026e-02	ci left: 1.037536e-01	ci right 1.107893e-01	k: 3217	n:30000
Cons ci ratio: 1.469593e-01	ci left: 2.146189e-02	ci right 2.489798e-02	k: 694	n:30000
KS ci ratio: 1.063020e-02	ci left: 8.148648e-01	ci right 8.236066e-01	k: 24578	n:30000
ZHX1   30000 perm   6 sec   (4766 perm/sec)   p_kst 8.192667e-01   p_cons 2.313333e-02   p_joint 1.072333e-01

Joint ci ratio: 5.058642e-02	ci left: 1.272133e-01	ci right 1.338404e-01	k: 5220	n:40000
Cons ci ratio: 1.283864e-01	ci left: 2.131102e-02	ci right 2.425883e-02	k: 910	n:40000
KS ci ratio: 9.190168e-03	ci left: 8.159725e-01	ci right 8.235310e-01	k: 32791	n:40000
ZHX1   40000 perm   9 sec   (4638 perm/sec)   p_kst 8.197750e-01   p_cons 2.275000e-02   p_joint 1.305000e-01

Joint ci ratio: 4.530685e-02	ci left: 1.272618e-01	ci right 1.331812e-01	k: 6510	n:50000
Cons ci ratio: 1.145114e-01	ci left: 2.158717e-02	ci right 2.422862e-02	k: 1144	n:50000
KS ci ratio: 8.263131e-03	ci left: 8.148111e-01	ci right 8.215919e-01	k: 40911	n:50000
ZHX1   50000 perm   11 sec   (4463 perm/sec)   p_kst 8.182200e-01   p_cons 2.288000e-02   p_joint 1.302000e-01

Joint ci ratio: 4.447114e-02	ci left: 1.120946e-01	ci right 1.172094e-01	k: 6878	n:60000
Cons ci ratio: 1.048864e-01	ci left: 2.155548e-02	ci right 2.395765e-02	k: 1364	n:60000
KS ci ratio: 7.519988e-03	ci left: 8.160297e-01	ci right 8.222060e-01	k: 49148	n:60000
ZHX1   60000 perm   14 sec   (4359 perm/sec)   p_kst 8.191333e-01   p_cons 2.273333e-02   p_joint 1.146333e-01

Joint ci ratio: 5.069795e-02	ci left: 7.668737e-02	ci right 8.069050e-02	k: 5507	n:70000
Cons ci ratio: 1.064613e-01	ci left: 1.798755e-02	ci right 2.002403e-02	k: 1329	n:70000
KS ci ratio: 6.960579e-03	ci left: 8.163287e-01	ci right 8.220448e-01	k: 57344	n:70000
ZHX1   70000 perm   16 sec   (4295 perm/sec)   p_kst 8.192000e-01   p_cons 1.898571e-02   p_joint 7.867143e-02

Joint ci ratio: 4.633711e-02	ci left: 8.020666e-02	ci right 8.402371e-02	k: 6568	n:80000
Cons ci ratio: 9.928630e-02	ci left: 1.816273e-02	ci right 2.007237e-02	k: 1528	n:80000
KS ci ratio: 6.522004e-03	ci left: 8.160125e-01	ci right 8.213644e-01	k: 65496	n:80000
ZHX1   80000 perm   19 sec   (4216 perm/sec)   p_kst 8.187000e-01   p_cons 1.910000e-02   p_joint 8.210000e-02

Outputting figure to mutsig2_images.part000000000194/ZHX1.5_2626_80000_0.8187_0.0191_0.0821.png
                gene_name: ZHX1
               theta_stop: 0.099 
                    nperm: 80000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.019 
      ci_cons_bounds_left: 0.018 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.082 
     ci_joint_bounds_left: 0.080 
    ci_joint_bounds_right: 0.084 

Current progress: 54 percent done.
ZIC1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.865516e-02	ci left: 6.422690e-01	ci right 6.610426e-01	k: 6517	n:10000
Cons ci ratio: 3.441962e-02	ci left: 5.548147e-01	ci right 5.743477e-01	k: 5646	n:10000
KS ci ratio: 4.970216e-02	ci left: 3.738555e-01	ci right 3.930125e-01	k: 3834	n:10000
ZIC1   10000 perm   2 sec   (6221 perm/sec)   p_kst 3.834000e-01   p_cons 5.646000e-01   p_joint 6.517000e-01

Outputting figure to mutsig2_images.part000000000194/ZIC1.5_1356_10000_0.3834_0.5646_0.6517.png
                gene_name: ZIC1
               theta_stop: 0.050 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 56 percent done.
ZKSCAN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.568770e-02	ci left: 2.538964e-01	ci right 2.712421e-01	k: 2625	n:10000
Cons ci ratio: 5.658335e-02	ci left: 3.150282e-01	ci right 3.334743e-01	k: 3242	n:10000
KS ci ratio: 9.423735e-02	ci left: 1.405053e-01	ci right 1.545008e-01	k: 1474	n:10000
ZKSCAN1   10000 perm   2 sec   (5487 perm/sec)   p_kst 1.474000e-01   p_cons 3.242000e-01   p_joint 2.625000e-01

Outputting figure to mutsig2_images.part000000000194/ZKSCAN1.5_1712_10000_0.1474_0.3242_0.2625.png
                gene_name: ZKSCAN1
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 57 percent done.
ZKSCAN5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.298924e-02	ci left: 3.442234e-01	ci right 3.630619e-01	k: 3536	n:10000
Cons ci ratio: 7.642078e-02	ci left: 2.002780e-01	ci right 2.162923e-01	k: 2082	n:10000
KS ci ratio: 6.045373e-02	ci left: 2.869643e-01	ci right 3.049547e-01	k: 2959	n:10000
ZKSCAN5   10000 perm   2 sec   (5080 perm/sec)   p_kst 2.959000e-01   p_cons 2.082000e-01   p_joint 3.536000e-01

Outputting figure to mutsig2_images.part000000000194/ZKSCAN5.5_2544_10000_0.2959_0.2082_0.3536.png
                gene_name: ZKSCAN5
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 59 percent done.
ZMAT3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.185675e-02	ci left: 5.925284e-01	ci right 6.118120e-01	k: 6022	n:10000
KS ci ratio: 5.711794e-03	ci left: 9.763158e-01	ci right 9.820003e-01	k: 9793	n:10000
ZMAT3   10000 perm   2 sec   (6511 perm/sec)   p_kst 9.793000e-01   p_cons 6.022000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZMAT3.5_890_10000_0.9793_0.6022_1.png
                gene_name: ZMAT3
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
ZDHHC21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.747785e-02	ci left: 6.611889e-01	ci right 6.797117e-01	k: 6705	n:10000
Cons ci ratio: 7.256337e-02	ci left: 2.176360e-01	ci right 2.341240e-01	k: 2258	n:10000
KS ci ratio: 1.991251e-02	ci left: 7.868508e-01	ci right 8.027771e-01	k: 7949	n:10000
ZDHHC21   10000 perm   2 sec   (5924 perm/sec)   p_kst 7.949000e-01   p_cons 2.258000e-01   p_joint 6.705000e-01

Outputting figure to mutsig2_images.part000000000194/ZDHHC21.4_826_10000_0.7949_0.2258_0.6705.png
                gene_name: ZDHHC21
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 62 percent done.
ZDHHC7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.477798e-02	ci left: 5.497037e-01	ci right 5.692617e-01	k: 5595	n:10000
Cons ci ratio: 2.541083e-02	ci left: 6.950453e-01	ci right 7.130357e-01	k: 7041	n:10000
KS ci ratio: 4.876921e-02	ci left: 3.828123e-01	ci right 4.020504e-01	k: 3924	n:10000
ZDHHC7   10000 perm   2 sec   (6157 perm/sec)   p_kst 3.924000e-01   p_cons 7.041000e-01   p_joint 5.595000e-01

Outputting figure to mutsig2_images.part000000000194/ZDHHC7.4_1066_10000_0.3924_0.7041_0.5595.png
                gene_name: ZDHHC7
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 64 percent done.
ZER1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.141216e-02	ci left: 7.618263e-01	ci right 7.784160e-01	k: 7702	n:10000
Cons ci ratio: 5.992136e-02	ci left: 2.906312e-01	ci right 3.086857e-01	k: 2996	n:10000
KS ci ratio: 6.288299e-03	ci left: 9.717481e-01	ci right 9.779710e-01	k: 9750	n:10000
ZER1   10000 perm   2 sec   (5450 perm/sec)   p_kst 9.750000e-01   p_cons 2.996000e-01   p_joint 7.702000e-01

Outputting figure to mutsig2_images.part000000000194/ZER1.4_2361_10000_0.975_0.2996_0.7702.png
                gene_name: ZER1
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 66 percent done.
ZFP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
Cons ci ratio: 9.817468e-02	ci left: 1.307088e-01	ci right 1.443032e-01	k: 1374	n:10000
KS ci ratio: 1.564030e-01	ci left: 5.446081e-02	ci right 6.379808e-02	k: 590	n:10000
ZFP1   10000 perm   2 sec   (6650 perm/sec)   p_kst 5.900000e-02   p_cons 1.374000e-01   p_joint 9.500000e-02

Joint ci ratio: 7.769665e-02	ci left: 1.084964e-01	ci right 1.173165e-01	k: 2257	n:20000
Cons ci ratio: 7.089269e-02	ci left: 1.278792e-01	ci right 1.373279e-01	k: 2651	n:20000
KS ci ratio: 1.110964e-01	ci left: 5.533552e-02	ci right 6.189353e-02	k: 1171	n:20000
ZFP1   20000 perm   3 sec   (5874 perm/sec)   p_kst 5.855000e-02   p_cons 1.325500e-01   p_joint 1.128500e-01

Joint ci ratio: 9.663212e-02	ci left: 4.948182e-02	ci right 5.453872e-02	k: 1559	n:30000
Cons ci ratio: 5.815393e-02	ci left: 1.276950e-01	ci right 1.353765e-01	k: 3945	n:30000
KS ci ratio: 9.027489e-02	ci left: 5.645771e-02	ci right 6.182806e-02	k: 1773	n:30000
ZFP1   30000 perm   5 sec   (5592 perm/sec)   p_kst 5.910000e-02   p_cons 1.315000e-01   p_joint 5.196667e-02

Outputting figure to mutsig2_images.part000000000194/ZFP1.4_1236_30000_0.0591_0.1315_0.051967.png
                gene_name: ZFP1
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.056 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.052 
     ci_joint_bounds_left: 0.049 
    ci_joint_bounds_right: 0.055 

Current progress: 67 percent done.
ZMAT4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.981823e-02	ci left: 4.822549e-01	ci right 5.019497e-01	k: 4921	n:10000
Cons ci ratio: 3.814999e-02	ci left: 5.036510e-01	ci right 5.233411e-01	k: 5135	n:10000
KS ci ratio: 5.256318e-02	ci left: 3.479005e-01	ci right 3.667827e-01	k: 3573	n:10000
ZMAT4   10000 perm   2 sec   (6160 perm/sec)   p_kst 3.573000e-01   p_cons 5.135000e-01   p_joint 4.921000e-01

Outputting figure to mutsig2_images.part000000000194/ZMAT4.4_714_10000_0.3573_0.5135_0.4921.png
                gene_name: ZMAT4
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 69 percent done.
ZMPSTE24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.304689e-02	ci left: 1.745794e-01	ci right 1.898062e-01	k: 1821	n:10000
Cons ci ratio: 3.176417e-01	ci left: 1.261754e-02	ci right 1.747097e-02	k: 149	n:10000
KS ci ratio: 2.095822e-02	ci left: 7.694204e-01	ci right 7.858176e-01	k: 7777	n:10000
ZMPSTE24   10000 perm   2 sec   (5774 perm/sec)   p_kst 7.777000e-01   p_cons 1.490000e-02   p_joint 1.821000e-01

Joint ci ratio: 6.762135e-02	ci left: 1.389641e-01	ci right 1.487397e-01	k: 2876	n:20000
Cons ci ratio: 2.163410e-01	ci left: 1.440132e-02	ci right 1.794137e-02	k: 322	n:20000
KS ci ratio: 1.494598e-02	ci left: 7.688957e-01	ci right 7.805243e-01	k: 15495	n:20000
ZMPSTE24   20000 perm   4 sec   (5224 perm/sec)   p_kst 7.747500e-01   p_cons 1.610000e-02   p_joint 1.438000e-01

Joint ci ratio: 5.874677e-02	ci left: 1.254238e-01	ci right 1.330482e-01	k: 3876	n:30000
Cons ci ratio: 1.819649e-01	ci left: 1.384596e-02	ci right 1.664906e-02	k: 456	n:30000
KS ci ratio: 1.216894e-02	ci left: 7.709703e-01	ci right 7.804430e-01	k: 23272	n:30000
ZMPSTE24   30000 perm   6 sec   (4890 perm/sec)   p_kst 7.757333e-01   p_cons 1.520000e-02   p_joint 1.292000e-01

Joint ci ratio: 5.527897e-02	ci left: 1.085795e-01	ci right 1.147770e-01	k: 4466	n:40000
Cons ci ratio: 1.565895e-01	ci left: 1.421605e-02	ci right 1.665503e-02	k: 616	n:40000
KS ci ratio: 1.056838e-02	ci left: 7.706238e-01	ci right 7.788363e-01	k: 30990	n:40000
ZMPSTE24   40000 perm   8 sec   (4762 perm/sec)   p_kst 7.747500e-01   p_cons 1.540000e-02   p_joint 1.116500e-01

Joint ci ratio: 5.351235e-02	ci left: 9.432051e-02	ci right 9.952639e-02	k: 4845	n:50000
Cons ci ratio: 1.405449e-01	ci left: 1.424234e-02	ci right 1.641446e-02	k: 765	n:50000
KS ci ratio: 9.491904e-03	ci left: 7.696042e-01	ci right 7.769640e-01	k: 38665	n:50000
ZMPSTE24   50000 perm   11 sec   (4685 perm/sec)   p_kst 7.733000e-01   p_cons 1.530000e-02   p_joint 9.690000e-02

Joint ci ratio: 4.471747e-02	ci left: 1.109888e-01	ci right 1.160820e-01	k: 6811	n:60000
Cons ci ratio: 1.269871e-01	ci left: 1.463973e-02	ci right 1.664085e-02	k: 937	n:60000
KS ci ratio: 8.683414e-03	ci left: 7.691744e-01	ci right 7.758992e-01	k: 46353	n:60000
ZMPSTE24   60000 perm   13 sec   (4468 perm/sec)   p_kst 7.725500e-01   p_cons 1.561667e-02   p_joint 1.135167e-01

Joint ci ratio: 3.982385e-02	ci left: 1.191592e-01	ci right 1.240151e-01	k: 8510	n:70000
Cons ci ratio: 1.166681e-01	ci left: 1.494469e-02	ci right 1.681004e-02	k: 1110	n:70000
KS ci ratio: 8.045323e-03	ci left: 7.691607e-01	ci right 7.753881e-01	k: 54060	n:70000
ZMPSTE24   70000 perm   16 sec   (4417 perm/sec)   p_kst 7.722857e-01   p_cons 1.585714e-02   p_joint 1.215714e-01

Joint ci ratio: 3.418144e-02	ci left: 1.387689e-01	ci right 1.436071e-01	k: 11294	n:80000
Cons ci ratio: 1.092080e-01	ci left: 1.498371e-02	ci right 1.672665e-02	k: 1267	n:80000
KS ci ratio: 7.607474e-03	ci left: 7.655236e-01	ci right 7.713820e-01	k: 61477	n:80000
ZMPSTE24   80000 perm   18 sec   (4361 perm/sec)   p_kst 7.684625e-01   p_cons 1.583750e-02   p_joint 1.411750e-01

Joint ci ratio: 3.517943e-02	ci left: 1.190966e-01	ci right 1.233723e-01	k: 10910	n:90000
Cons ci ratio: 1.028708e-01	ci left: 1.506035e-02	ci right 1.670440e-02	k: 1428	n:90000
KS ci ratio: 7.170071e-03	ci left: 7.658083e-01	ci right 7.713300e-01	k: 69172	n:90000
ZMPSTE24   90000 perm   21 sec   (4308 perm/sec)   p_kst 7.685778e-01   p_cons 1.586667e-02   p_joint 1.212222e-01

Joint ci ratio: 2.397151e-02	ci left: 2.084546e-01	ci right 2.135222e-01	k: 21098	n:100000
Cons ci ratio: 9.733609e-02	ci left: 1.518257e-02	ci right 1.674569e-02	k: 1595	n:100000
KS ci ratio: 6.792141e-03	ci left: 7.664753e-01	ci right 7.717090e-01	k: 76910	n:100000
ZMPSTE24   100000 perm   24 sec   (4250 perm/sec)   p_kst 7.691000e-01   p_cons 1.595000e-02   p_joint 2.109800e-01

Outputting figure to mutsig2_images.part000000000194/ZMPSTE24.4_1468_100000_0.7691_0.01595_0.21098.png
                gene_name: ZMPSTE24
               theta_stop: 0.097 
                    nperm: 100000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.77 
                   p_cons: 0.016 
      ci_cons_bounds_left: 0.015 
     ci_cons_bounds_right: 0.017 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.21 

Current progress: 70 percent done.
ZDHHC2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.340926e-02	ci left: 2.676508e-01	ci right 2.852796e-01	k: 2764	n:10000
Cons ci ratio: 8.072269e-03	ci left: 9.553457e-01	ci right 9.631839e-01	k: 9594	n:10000
KS ci ratio: 7.805671e-02	ci left: 1.934789e-01	ci right 2.092954e-01	k: 2013	n:10000
ZDHHC2   10000 perm   2 sec   (6452 perm/sec)   p_kst 2.013000e-01   p_cons 9.594000e-01   p_joint 2.764000e-01

Outputting figure to mutsig2_images.part000000000194/ZDHHC2.3_1152_10000_0.2013_0.9594_0.2764.png
                gene_name: ZDHHC2
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 72 percent done.
ZDHHC20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.417606e-03	ci left: 9.517953e-01	ci right 9.599365e-01	k: 9560	n:10000
KS ci ratio: 1.637888e-02	ci left: 8.442763e-01	ci right 8.583184e-01	k: 8514	n:10000
ZDHHC20   10000 perm   2 sec   (6658 perm/sec)   p_kst 8.514000e-01   p_cons 9.560000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZDHHC20.3_1113_10000_0.8514_0.956_1.png
                gene_name: ZDHHC20
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 74 percent done.
ZDHHC24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.602251e-02	ci left: 5.322739e-01	ci right 5.519016e-01	k: 5421	n:10000
Cons ci ratio: 9.768106e-02	ci left: 1.318837e-01	ci right 1.455275e-01	k: 1386	n:10000
KS ci ratio: 2.864885e-02	ci left: 6.423696e-01	ci right 6.611419e-01	k: 6518	n:10000
ZDHHC24   10000 perm   1 sec   (6767 perm/sec)   p_kst 6.518000e-01   p_cons 1.386000e-01   p_joint 5.421000e-01

Outputting figure to mutsig2_images.part000000000194/ZDHHC24.3_867_10000_0.6518_0.1386_0.5421.png
                gene_name: ZDHHC24
               theta_stop: 0.098 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 75 percent done.
ZDHHC5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.170467e-02	ci left: 3.554552e-01	ci right 3.744236e-01	k: 3649	n:10000
Cons ci ratio: 7.200770e-02	ci left: 2.203008e-01	ci right 2.368576e-01	k: 2285	n:10000
KS ci ratio: 9.960716e-02	ci left: 1.273806e-01	ci right 1.408333e-01	k: 1340	n:10000
ZDHHC5   10000 perm   2 sec   (5976 perm/sec)   p_kst 1.340000e-01   p_cons 2.285000e-01   p_joint 3.649000e-01

Outputting figure to mutsig2_images.part000000000194/ZDHHC5.3_2192_10000_0.134_0.2285_0.3649.png
                gene_name: ZDHHC5
               theta_stop: 0.100 
                    nperm: 10000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.37 

Current progress: 77 percent done.
ZFAND3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.183069e-02	ci left: 2.777507e-01	ci right 2.955737e-01	k: 2866	n:10000
Cons ci ratio: 5.117355e-02	ci left: 3.602279e-01	ci right 3.792481e-01	k: 3697	n:10000
KS ci ratio: 8.627786e-02	ci left: 1.636672e-01	ci right 1.785250e-01	k: 1710	n:10000
ZFAND3   10000 perm   2 sec   (6524 perm/sec)   p_kst 1.710000e-01   p_cons 3.697000e-01   p_joint 2.866000e-01

Outputting figure to mutsig2_images.part000000000194/ZFAND3.3_708_10000_0.171_0.3697_0.2866.png
                gene_name: ZFAND3
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 79 percent done.
ZFP161
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.926953e-02	ci left: 7.975022e-01	ci right 8.131196e-01	k: 8054	n:10000
Cons ci ratio: 4.873855e-02	ci left: 3.831109e-01	ci right 4.023516e-01	k: 3927	n:10000
KS ci ratio: 6.067200e-02	ci left: 2.854779e-01	ci right 3.034419e-01	k: 2944	n:10000
ZFP161   10000 perm   2 sec   (5519 perm/sec)   p_kst 2.944000e-01   p_cons 3.927000e-01   p_joint 8.054000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP161.2_1358_10000_0.2944_0.3927_0.8054.png
                gene_name: ZFP161
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 80 percent done.
ZFP30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.052141e-02	ci left: 7.767143e-01	ci right 7.929195e-01	k: 7849	n:10000
Cons ci ratio: 3.081627e-02	ci left: 6.083937e-01	ci right 6.275375e-01	k: 6180	n:10000
KS ci ratio: 3.552480e-02	ci left: 5.391843e-01	ci right 5.587872e-01	k: 5490	n:10000
ZFP30   10000 perm   2 sec   (6142 perm/sec)   p_kst 5.490000e-01   p_cons 6.180000e-01   p_joint 7.849000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP30.3_1576_10000_0.549_0.618_0.7849.png
                gene_name: ZFP30
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 82 percent done.
ZFP42
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.157215e-02	ci left: 9.144065e-01	ci right 9.251474e-01	k: 9199	n:10000
KS ci ratio: 1.939847e-02	ci left: 7.953712e-01	ci right 8.110517e-01	k: 8033	n:10000
ZFP42   10000 perm   2 sec   (6324 perm/sec)   p_kst 8.033000e-01   p_cons 9.199000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZFP42.3_937_10000_0.8033_0.9199_1.png
                gene_name: ZFP42
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
ZFP91
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.632616e-02	ci left: 3.170130e-01	ci right 3.354883e-01	k: 3262	n:10000
Cons ci ratio: 7.519138e-02	ci left: 2.056014e-01	ci right 2.217657e-01	k: 2136	n:10000
KS ci ratio: 2.887004e-02	ci left: 6.388490e-01	ci right 6.576645e-01	k: 6483	n:10000
ZFP91   10000 perm   2 sec   (6250 perm/sec)   p_kst 6.483000e-01   p_cons 2.136000e-01   p_joint 3.262000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP91.3_1757_10000_0.6483_0.2136_0.3262.png
                gene_name: ZFP91
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 85 percent done.
ZFPL1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.930639e-02	ci left: 7.968933e-01	ci right 8.125288e-01	k: 8048	n:10000
Cons ci ratio: 6.321963e-02	ci left: 2.688388e-01	ci right 2.864909e-01	k: 2776	n:10000
KS ci ratio: 4.852541e-03	ci left: 9.824212e-01	ci right 9.872903e-01	k: 9850	n:10000
ZFPL1   10000 perm   1 sec   (6916 perm/sec)   p_kst 9.850000e-01   p_cons 2.776000e-01   p_joint 8.048000e-01

Outputting figure to mutsig2_images.part000000000194/ZFPL1.3_961_10000_0.985_0.2776_0.8048.png
                gene_name: ZFPL1
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.80 
     ci_joint_bounds_left: 0.80 
    ci_joint_bounds_right: 0.81 

Current progress: 87 percent done.
ZIC3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.012969e-02	ci left: 1.853052e-01	ci right 2.008740e-01	k: 1930	n:10000
Cons ci ratio: 1.241134e-01	ci left: 8.504395e-02	ci right 9.639578e-02	k: 906	n:10000
KS ci ratio: 4.771208e-02	ci left: 3.932662e-01	ci right 4.125904e-01	k: 4029	n:10000
ZIC3   10000 perm   2 sec   (6274 perm/sec)   p_kst 4.029000e-01   p_cons 9.060000e-02   p_joint 1.930000e-01

Joint ci ratio: 4.572218e-02	ci left: 2.625655e-01	ci right 2.749018e-01	k: 5374	n:20000
Cons ci ratio: 8.741912e-02	ci left: 8.734272e-02	ci right 9.537654e-02	k: 1826	n:20000
KS ci ratio: 3.346881e-02	ci left: 3.999809e-01	ci right 4.136462e-01	k: 8136	n:20000
ZIC3   20000 perm   4 sec   (5573 perm/sec)   p_kst 4.068000e-01   p_cons 9.130000e-02   p_joint 2.687000e-01

Outputting figure to mutsig2_images.part000000000194/ZIC3.3_1416_20000_0.4068_0.0913_0.2687.png
                gene_name: ZIC3
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.091 
      ci_cons_bounds_left: 0.087 
     ci_cons_bounds_right: 0.095 
                  p_joint: 0.27 
     ci_joint_bounds_left: 0.26 
    ci_joint_bounds_right: 0.27 

Current progress: 89 percent done.
ZMIZ1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.988973e-02	ci left: 2.308658e-01	ci right 2.476864e-01	k: 2392	n:10000
Cons ci ratio: 1.279304e-02	ci left: 8.978526e-01	ci right 9.095111e-01	k: 9038	n:10000
KS ci ratio: 8.534673e-02	ci left: 1.667136e-01	ci right 1.816767e-01	k: 1741	n:10000
ZMIZ1   10000 perm   2 sec   (5330 perm/sec)   p_kst 1.741000e-01   p_cons 9.038000e-01   p_joint 2.392000e-01

Outputting figure to mutsig2_images.part000000000194/ZMIZ1.3_3288_10000_0.1741_0.9038_0.2392.png
                gene_name: ZMIZ1
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 90 percent done.
ZDHHC6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.131927e-02	ci left: 9.177038e-01	ci right 9.282482e-01	k: 9231	n:10000
Cons ci ratio: 4.041214e-02	ci left: 4.748604e-01	ci right 4.945485e-01	k: 4847	n:10000
KS ci ratio: 3.008344e-02	ci left: 6.197470e-01	ci right 6.387777e-01	k: 6293	n:10000
ZDHHC6   10000 perm   1 sec   (6779 perm/sec)   p_kst 6.293000e-01   p_cons 4.847000e-01   p_joint 9.231000e-01

Outputting figure to mutsig2_images.part000000000194/ZDHHC6.2_1282_10000_0.6293_0.4847_0.9231.png
                gene_name: ZDHHC6
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 92 percent done.
ZDHHC9
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.713967e-02	ci left: 5.170577e-01	ci right 5.367266e-01	k: 5269	n:10000
KS ci ratio: 3.047793e-02	ci left: 6.136175e-01	ci right 6.327106e-01	k: 6232	n:10000
ZDHHC9   10000 perm   1 sec   (6950 perm/sec)   p_kst 6.232000e-01   p_cons 5.269000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000194/ZDHHC9.2_1131_10000_0.6232_0.5269_1.png
                gene_name: ZDHHC9
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
ZFP37
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.679656e-02	ci left: 6.722668e-01	ci right 6.906274e-01	k: 6815	n:10000
Cons ci ratio: 5.682955e-02	ci left: 3.131428e-01	ci right 3.315608e-01	k: 3223	n:10000
KS ci ratio: 3.541488e-03	ci left: 9.900531e-01	ci right 9.936515e-01	k: 9920	n:10000
ZFP37   10000 perm   2 sec   (5959 perm/sec)   p_kst 9.920000e-01   p_cons 3.223000e-01   p_joint 6.815000e-01

Outputting figure to mutsig2_images.part000000000194/ZFP37.2_1909_10000_0.992_0.3223_0.6815.png
                gene_name: ZFP37
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 95 percent done.
ZFYVE20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.184721e-02	ci left: 7.545395e-01	ci right 7.713071e-01	k: 7630	n:10000
Cons ci ratio: 7.251022e-03	ci left: 9.633100e-01	ci right 9.704146e-01	k: 9670	n:10000
KS ci ratio: 4.881014e-02	ci left: 3.824141e-01	ci right 4.016488e-01	k: 3920	n:10000
ZFYVE20   10000 perm   2 sec   (6226 perm/sec)   p_kst 3.920000e-01   p_cons 9.670000e-01   p_joint 7.630000e-01

Outputting figure to mutsig2_images.part000000000194/ZFYVE20.2_2399_10000_0.392_0.967_0.763.png
                gene_name: ZFYVE20
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 97 percent done.
ZKSCAN3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.605409e-02	ci left: 8.493730e-01	ci right 8.632188e-01	k: 8564	n:10000
Cons ci ratio: 1.287374e-02	ci left: 8.967235e-01	ci right 9.084408e-01	k: 9027	n:10000
KS ci ratio: 3.073802e-02	ci left: 6.095991e-01	ci right 6.287314e-01	k: 6192	n:10000
ZKSCAN3   10000 perm   2 sec   (6614 perm/sec)   p_kst 6.192000e-01   p_cons 9.027000e-01   p_joint 8.564000e-01

Outputting figure to mutsig2_images.part000000000194/ZKSCAN3.2_1637_10000_0.6192_0.9027_0.8564.png
                gene_name: ZKSCAN3
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 98 percent done.
ZKSCAN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.831816e-01	ci left: 1.613586e-02	ci right 2.154960e-02	k: 187	n:10000
Cons ci ratio: 2.853536e-02	ci left: 6.441804e-01	ci right 6.629301e-01	k: 6536	n:10000
KS ci ratio: 2.537862e-01	ci left: 2.033901e-02	ci right 2.634310e-02	k: 232	n:10000
ZKSCAN4   10000 perm   2 sec   (6576 perm/sec)   p_kst 2.320000e-02   p_cons 6.536000e-01   p_joint 1.870000e-02

Joint ci ratio: 1.908840e-01	ci left: 1.867638e-02	ci right 2.266469e-02	k: 412	n:20000
Cons ci ratio: 2.014051e-02	ci left: 6.478123e-01	ci right 6.610428e-01	k: 13089	n:20000
KS ci ratio: 1.848072e-01	ci left: 1.996409e-02	ci right 2.407650e-02	k: 439	n:20000
ZKSCAN4   20000 perm   3 sec   (5874 perm/sec)   p_kst 2.195000e-02   p_cons 6.544500e-01   p_joint 2.060000e-02

Joint ci ratio: 1.597865e-01	ci left: 1.809339e-02	ci right 2.126726e-02	k: 589	n:30000
Cons ci ratio: 1.636800e-02	ci left: 6.511617e-01	ci right 6.619413e-01	k: 19697	n:30000
KS ci ratio: 1.496256e-01	ci left: 2.069096e-02	ci right 2.406909e-02	k: 670	n:30000
ZKSCAN4   30000 perm   5 sec   (5486 perm/sec)   p_kst 2.233333e-02   p_cons 6.565667e-01   p_joint 1.963333e-02

Joint ci ratio: 1.334185e-01	ci left: 1.971394e-02	ci right 2.255618e-02	k: 844	n:40000
Cons ci ratio: 1.414901e-02	ci left: 6.527254e-01	ci right 6.620517e-01	k: 26296	n:40000
KS ci ratio: 1.317556e-01	ci left: 2.022187e-02	ci right 2.309816e-02	k: 865	n:40000
ZKSCAN4   40000 perm   8 sec   (5226 perm/sec)   p_kst 2.162500e-02   p_cons 6.574000e-01   p_joint 2.110000e-02

Joint ci ratio: 1.202821e-01	ci left: 1.954755e-02	ci right 2.206852e-02	k: 1039	n:50000
Cons ci ratio: 1.269186e-02	ci left: 6.519175e-01	ci right 6.602644e-01	k: 32805	n:50000
KS ci ratio: 1.185476e-01	ci left: 2.012998e-02	ci right 2.268601e-02	k: 1069	n:50000
ZKSCAN4   50000 perm   10 sec   (5117 perm/sec)   p_kst 2.138000e-02   p_cons 6.561000e-01   p_joint 2.078000e-02

Joint ci ratio: 5.351575e-02	ci left: 7.988244e-02	ci right 8.429142e-02	k: 4924	n:60000
Cons ci ratio: 1.156296e-02	ci left: 6.531857e-01	ci right 6.607991e-01	k: 39420	n:60000
KS ci ratio: 1.081758e-01	ci left: 2.025693e-02	ci right 2.258968e-02	k: 1284	n:60000
ZKSCAN4   60000 perm   12 sec   (5005 perm/sec)   p_kst 2.140000e-02   p_cons 6.570000e-01   p_joint 8.206667e-02

Joint ci ratio: 9.477233e-02	ci left: 2.272533e-02	ci right 2.500009e-02	k: 1669	n:70000
Cons ci ratio: 1.072357e-02	ci left: 6.526965e-01	ci right 6.597477e-01	k: 45936	n:70000
KS ci ratio: 1.006730e-01	ci left: 2.013168e-02	ci right 2.227969e-02	k: 1483	n:70000
ZKSCAN4   70000 perm   14 sec   (4901 perm/sec)   p_kst 2.118571e-02   p_cons 6.562286e-01   p_joint 2.384286e-02

Joint ci ratio: 8.819270e-02	ci left: 2.303609e-02	ci right 2.517361e-02	k: 1927	n:80000
Cons ci ratio: 1.001552e-02	ci left: 6.536234e-01	ci right 6.602152e-01	k: 52554	n:80000
KS ci ratio: 9.397313e-02	ci left: 2.028621e-02	ci right 2.229871e-02	k: 1702	n:80000
ZKSCAN4   80000 perm   18 sec   (4530 perm/sec)   p_kst 2.127500e-02   p_cons 6.569250e-01   p_joint 2.408750e-02

Outputting figure to mutsig2_images.part000000000194/ZKSCAN4.2_1658_80000_0.021275_0.65692_0.024088.png
                gene_name: ZKSCAN4
               theta_stop: 0.094 
                    nperm: 80000 
                     p_ks: 0.021 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.022 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.024 
     ci_joint_bounds_left: 0.023 
    ci_joint_bounds_right: 0.025 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000194
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 194 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1647>
Subject: Job 9894212: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1647>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000195> was used as the working directory.
Started at Sat Oct  6 00:36:21 2012
Results reported at Sat Oct  6 01:31:43 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000195.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000195.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 195  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000195.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   3383.60 sec.
    Max Memory :      3607 MB
    Max Swap   :      5995 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
195
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 195
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 195: processing genes 17490 - 17579
Calculating significance of each gene.
Using projection method.
17490	ZMYM1	6.511829e-01
17491	ZMYM2	5.082864e-01
17492	ZMYM3	3.439389e-01
17493	ZMYM4	1.623958e-01
17494	ZMYM5	9.091924e-02
17495	ZMYM6	1.403522e-03
17496	ZMYND10	1
17497	ZMYND11	6.223905e-01
17498	ZMYND12	1
17499	ZMYND15	5.803168e-01
17500	ZMYND17	7.278507e-01
17501	ZMYND19	1.726093e-01
17502	ZMYND8	3.032500e-01
17503	ZNF10	1.153621e-01
17504	ZNF100	2.999732e-01
17505	ZNF101	1.928969e-01
17506	ZNF107	2.952665e-01
17507	ZNF114	1.190076e-01
17508	ZNF117	1.975077e-01
17509	ZNF12	9.156342e-01
17510	ZNF121	5.149671e-03
17511	ZNF124	6.178709e-01
17512	ZNF131	1
17513	ZNF132	2.572448e-01
17514	ZNF133	4.461544e-01
17515	ZNF134	3.352260e-01
17516	ZNF135	4.194371e-01
17517	ZNF136	6.603640e-01
17518	ZNF138	1.157214e-01
17519	ZNF14	3.110629e-02
17520	ZNF140	4.863282e-01
17521	ZNF141	1.540515e-01
17522	ZNF142	7.810502e-01
17523	ZNF143	3.729139e-01
17524	ZNF146	1.834625e-01
17525	ZNF148	6.061527e-01
In gene ZNF154 the following bins exceed PROBCAP:
    COAD-AA-3851	categ 6	N = 1289    n = 1	mu =   3.95e-07
17526	ZNF154	3.379423e-02
17527	ZNF155	1
17528	ZNF157	7.525446e-01
17529	ZNF16	4.610685e-01
17530	ZNF160	3.448635e-01
17531	ZNF165	7.757609e-01
17532	ZNF167	5.480697e-02
17533	ZNF169	7.499724e-01
17534	ZNF17	3.672451e-01
17535	ZNF174	6.518464e-01
17536	ZNF175	2.625103e-01
17537	ZNF177	7.236119e-01
17538	ZNF18	2.143549e-01
17539	ZNF180	1.076428e-01
17540	ZNF181	7.973292e-01
17541	ZNF182	1.909144e-01
17542	ZNF184	2.447248e-02
17543	ZNF185	5.684724e-01
17544	ZNF187	4.909694e-01
17545	ZNF189	9.190040e-01
17546	ZNF19	1.000920e-02
17547	ZNF192	4.359645e-01
17548	ZNF193	1
17549	ZNF195	6.032644e-01
17550	ZNF197	7.149862e-01
17551	ZNF2	5.765755e-01
17552	ZNF20	3.195462e-01
17553	ZNF200	2.298495e-01
17554	ZNF202	2.508797e-01
17555	ZNF205	6.580749e-01
17556	ZNF207	6.082373e-01
17557	ZNF208	2.888575e-03
17558	ZNF211	1.460036e-01
17559	ZNF212	2.446920e-01
17560	ZNF213	5.004005e-01
17561	ZNF214	2.449850e-01
17562	ZNF215	2.908929e-01
17563	ZNF217	7.587376e-01
17564	ZNF219	7.820155e-01
17565	ZNF22	7.927772e-03
17566	ZNF221	3.163910e-01
17567	ZNF222	1.850868e-01
17568	ZNF223	5.445065e-01
17569	ZNF224	8.585418e-01
17570	ZNF225	8.856273e-01
17571	ZNF226	3.206916e-01
17572	ZNF227	5.561432e-01
17573	ZNF229	7.637217e-01
17574	ZNF23	1.716166e-01
17575	ZNF230	4.335847e-01
17576	ZNF232	1
17577	ZNF233	4.201167e-01
17578	ZNF234	6.407841e-01
17579	ZNF235	6.521110e-02
Done

Running MutSig 2:
Scatter job 195: processing genes 17490 - 17579
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF208
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.134190e-01	ci left: 1.006167e-01	ci right 1.128135e-01	k: 1066	n:10000
Cons ci ratio: 3.000613e-02	ci left: 6.209529e-01	ci right 6.399710e-01	k: 6305	n:10000
KS ci ratio: 1.773010e-01	ci left: 4.245560e-02	ci right 5.081107e-02	k: 465	n:10000
ZNF208   10000 perm   2 sec   (4803 perm/sec)   p_kst 4.650000e-02   p_cons 6.305000e-01   p_joint 1.066000e-01

Joint ci ratio: 9.258836e-02	ci left: 7.842928e-02	ci right 8.609269e-02	k: 1644	n:20000
Cons ci ratio: 2.112529e-02	ci left: 6.258245e-01	ci right 6.392369e-01	k: 12651	n:20000
KS ci ratio: 1.228373e-01	ci left: 4.546654e-02	ci right 5.146561e-02	k: 968	n:20000
ZNF208   20000 perm   7 sec   (2755 perm/sec)   p_kst 4.840000e-02   p_cons 6.325500e-01   p_joint 8.220000e-02

Joint ci ratio: 7.390625e-02	ci left: 8.255602e-02	ci right 8.892448e-02	k: 2571	n:30000
Cons ci ratio: 1.791503e-02	ci left: 6.092322e-01	ci right 6.202789e-01	k: 18443	n:30000
KS ci ratio: 9.981082e-02	ci left: 4.645421e-02	ci right 5.136696e-02	k: 1466	n:30000
ZNF208   30000 perm   10 sec   (3077 perm/sec)   p_kst 4.886667e-02   p_cons 6.147667e-01   p_joint 8.570000e-02

Outputting figure to mutsig2_images.part000000000195/ZNF208.17_3859_30000_0.048867_0.61477_0.0857.png
                gene_name: ZNF208
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.086 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.089 

Current progress: 1 percent done.
ZNF180
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.876749e-01	ci left: 3.786599e-02	ci right 4.580373e-02	k: 417	n:10000
Cons ci ratio: 7.160178e-02	ci left: 2.222750e-01	ci right 2.388823e-01	k: 2305	n:10000
KS ci ratio: 2.709509e-01	ci left: 1.771967e-02	ci right 2.336449e-02	k: 204	n:10000
ZNF180   10000 perm   2 sec   (5760 perm/sec)   p_kst 2.040000e-02   p_cons 2.305000e-01   p_joint 4.170000e-02

Joint ci ratio: 1.338834e-01	ci left: 3.834219e-02	ci right 4.389223e-02	k: 821	n:20000
Cons ci ratio: 5.080961e-02	ci left: 2.234886e-01	ci right 2.351902e-01	k: 4586	n:20000
KS ci ratio: 1.923153e-01	ci left: 1.839051e-02	ci right 2.235066e-02	k: 406	n:20000
ZNF180   20000 perm   4 sec   (5212 perm/sec)   p_kst 2.030000e-02   p_cons 2.293000e-01   p_joint 4.105000e-02

Joint ci ratio: 1.353462e-01	ci left: 2.535629e-02	ci right 2.906936e-02	k: 815	n:30000
Cons ci ratio: 4.041426e-02	ci left: 2.338850e-01	ci right 2.435657e-01	k: 7161	n:30000
KS ci ratio: 1.609028e-01	ci left: 1.783724e-02	ci right 2.099014e-02	k: 581	n:30000
ZNF180   30000 perm   6 sec   (4962 perm/sec)   p_kst 1.936667e-02   p_cons 2.387000e-01   p_joint 2.716667e-02

Joint ci ratio: 1.295554e-01	ci left: 2.092365e-02	ci right 2.384626e-02	k: 894	n:40000
Cons ci ratio: 3.520405e-02	ci left: 2.324419e-01	ci right 2.407964e-01	k: 9464	n:40000
KS ci ratio: 1.378149e-01	ci left: 1.845721e-02	ci right 2.121312e-02	k: 792	n:40000
ZNF180   40000 perm   8 sec   (4807 perm/sec)   p_kst 1.980000e-02   p_cons 2.366000e-01   p_joint 2.235000e-02

Joint ci ratio: 1.121771e-01	ci left: 2.250111e-02	ci right 2.519456e-02	k: 1191	n:50000
Cons ci ratio: 3.142009e-02	ci left: 2.336559e-01	ci right 2.411346e-01	k: 11869	n:50000
KS ci ratio: 1.195794e-01	ci left: 1.978049e-02	ci right 2.231555e-02	k: 1051	n:50000
ZNF180   50000 perm   11 sec   (4674 perm/sec)   p_kst 2.102000e-02   p_cons 2.373800e-01   p_joint 2.382000e-02

Joint ci ratio: 1.000084e-01	ci left: 2.371667e-02	ci right 2.622957e-02	k: 1497	n:60000
Cons ci ratio: 2.871026e-02	ci left: 2.336350e-01	ci right 2.404571e-01	k: 14222	n:60000
KS ci ratio: 1.091343e-01	ci left: 1.990003e-02	ci right 2.221329e-02	k: 1262	n:60000
ZNF180   60000 perm   13 sec   (4560 perm/sec)   p_kst 2.103333e-02   p_cons 2.370333e-01   p_joint 2.495000e-02

Joint ci ratio: 7.937172e-02	ci left: 3.233337e-02	ci right 3.501975e-02	k: 2356	n:70000
Cons ci ratio: 2.650884e-02	ci left: 2.348632e-01	ci right 2.411871e-01	k: 16661	n:70000
KS ci ratio: 1.010563e-01	ci left: 1.997843e-02	ci right 2.211868e-02	k: 1472	n:70000
ZNF180   70000 perm   16 sec   (4466 perm/sec)   p_kst 2.102857e-02   p_cons 2.380143e-01   p_joint 3.365714e-02

Joint ci ratio: 7.850383e-02	ci left: 2.903717e-02	ci right 3.142206e-02	k: 2417	n:80000
Cons ci ratio: 2.484752e-02	ci left: 2.343304e-01	ci right 2.402386e-01	k: 18982	n:80000
KS ci ratio: 9.646225e-02	ci left: 1.924851e-02	ci right 2.121150e-02	k: 1617	n:80000
ZNF180   80000 perm   18 sec   (4372 perm/sec)   p_kst 2.021250e-02   p_cons 2.372750e-01   p_joint 3.021250e-02

Outputting figure to mutsig2_images.part000000000195/ZNF180.12_2099_80000_0.020213_0.23728_0.030212.png
                gene_name: ZNF180
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.029 
    ci_joint_bounds_right: 0.031 

Current progress: 3 percent done.
ZNF184
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.173246e-02	ci left: 7.564621e-01	ci right 7.731834e-01	k: 7649	n:10000
Cons ci ratio: 2.525240e-02	ci left: 6.976675e-01	ci right 7.156120e-01	k: 7067	n:10000
KS ci ratio: 2.570989e-02	ci left: 6.901044e-01	ci right 7.081794e-01	k: 6992	n:10000
ZNF184   10000 perm   2 sec   (4889 perm/sec)   p_kst 6.992000e-01   p_cons 7.067000e-01   p_joint 7.649000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF184.12_2276_10000_0.6992_0.7067_0.7649.png
                gene_name: ZNF184
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 4 percent done.
ZMYM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.330761e-02	ci left: 7.300714e-01	ci right 7.473894e-01	k: 7388	n:10000
Cons ci ratio: 5.603282e-02	ci left: 3.192957e-01	ci right 3.378043e-01	k: 3285	n:10000
KS ci ratio: 1.543566e-02	ci left: 8.589625e-01	ci right 8.724236e-01	k: 8658	n:10000
ZMYM4   10000 perm   2 sec   (4085 perm/sec)   p_kst 8.658000e-01   p_cons 3.285000e-01   p_joint 7.388000e-01

Outputting figure to mutsig2_images.part000000000195/ZMYM4.11_4767_10000_0.8658_0.3285_0.7388.png
                gene_name: ZMYM4
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.87 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 5 percent done.
ZMYM6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.884446e-02	ci left: 8.045063e-01	ci right 8.199113e-01	k: 8123	n:10000
KS ci ratio: 9.499931e-03	ci left: 9.399353e-01	ci right 9.490036e-01	k: 9446	n:10000
ZMYM6   10000 perm   2 sec   (4451 perm/sec)   p_kst 9.446000e-01   p_cons 8.123000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZMYM6.11_4038_10000_0.9446_0.8123_1.png
                gene_name: ZMYM6
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 7 percent done.
ZMYM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.772199e-02	ci left: 3.931666e-01	ci right 4.124900e-01	k: 4028	n:10000
Cons ci ratio: 1.250437e-02	ci left: 9.018575e-01	ci right 9.133038e-01	k: 9077	n:10000
KS ci ratio: 6.003574e-02	ci left: 2.898383e-01	ci right 3.078790e-01	k: 2988	n:10000
ZMYM5   10000 perm   2 sec   (5517 perm/sec)   p_kst 2.988000e-01   p_cons 9.077000e-01   p_joint 4.028000e-01

Outputting figure to mutsig2_images.part000000000195/ZMYM5.8_2145_10000_0.2988_0.9077_0.4028.png
                gene_name: ZMYM5
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 8 percent done.
ZMYND8
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.172899e-02	ci left: 4.588797e-01	ci right 4.785385e-01	k: 4687	n:10000
Cons ci ratio: 2.540473e-02	ci left: 6.951461e-01	ci right 7.131348e-01	k: 7042	n:10000
KS ci ratio: 5.703829e-02	ci left: 3.115552e-01	ci right 3.299493e-01	k: 3207	n:10000
ZMYND8   10000 perm   2 sec   (4760 perm/sec)   p_kst 3.207000e-01   p_cons 7.042000e-01   p_joint 4.687000e-01

Outputting figure to mutsig2_images.part000000000195/ZMYND8.8_3659_10000_0.3207_0.7042_0.4687.png
                gene_name: ZMYND8
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 9 percent done.
ZNF167
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.989652e-01	ci left: 1.437251e-02	ci right 1.951444e-02	k: 168	n:10000
Cons ci ratio: 1.363864e-01	ci left: 7.107385e-02	ci right 8.157455e-02	k: 762	n:10000
KS ci ratio: 1.306013e+00	ci left: 3.454445e-04	ci right 1.575707e-03	k: 8	n:10000
ZNF167   10000 perm   2 sec   (4999 perm/sec)   p_kst 8.000000e-04   p_cons 7.620000e-02   p_joint 1.680000e-02

Joint ci ratio: 3.440134e-01	ci left: 5.342070e-03	ci right 7.605013e-03	k: 128	n:20000
Cons ci ratio: 9.783690e-02	ci left: 7.065356e-02	ci right 7.797078e-02	k: 1485	n:20000
KS ci ratio: 1.047271e+00	ci left: 3.461416e-04	ci right 1.111263e-03	k: 13	n:20000
ZNF167   20000 perm   4 sec   (4537 perm/sec)   p_kst 6.500000e-04   p_cons 7.425000e-02   p_joint 6.400000e-03

Joint ci ratio: 3.160988e-01	ci left: 4.294810e-03	ci right 5.936614e-03	k: 152	n:30000
Cons ci ratio: 8.000043e-02	ci left: 7.112796e-02	ci right 7.708817e-02	k: 2222	n:30000
KS ci ratio: 8.354264e-01	ci left: 4.333616e-04	ci right 1.069826e-03	k: 21	n:30000
ZNF167   30000 perm   7 sec   (4342 perm/sec)   p_kst 7.000000e-04   p_cons 7.406667e-02   p_joint 5.066667e-03

Joint ci ratio: 3.238249e-01	ci left: 3.059825e-03	ci right 4.264004e-03	k: 145	n:40000
Cons ci ratio: 6.920702e-02	ci left: 7.167458e-02	ci right 7.683743e-02	k: 2969	n:40000
KS ci ratio: 7.276527e-01	ci left: 4.651937e-04	ci right 1.011537e-03	k: 28	n:40000
ZNF167   40000 perm   9 sec   (4226 perm/sec)   p_kst 7.000000e-04   p_cons 7.422500e-02   p_joint 3.625000e-03

Joint ci ratio: 3.250627e-01	ci left: 2.429353e-03	ci right 3.389804e-03	k: 144	n:50000
Cons ci ratio: 6.191428e-02	ci left: 7.191744e-02	ci right 7.653214e-02	k: 3710	n:50000
KS ci ratio: 6.356599e-01	ci left: 5.210801e-04	ci right 1.019850e-03	k: 37	n:50000
ZNF167   50000 perm   12 sec   (4122 perm/sec)   p_kst 7.400000e-04   p_cons 7.420000e-02   p_joint 2.880000e-03

Joint ci ratio: 3.124379e-01	ci left: 2.208423e-03	ci right 3.040850e-03	k: 156	n:60000
Cons ci ratio: 5.652120e-02	ci left: 7.211513e-02	ci right 7.632616e-02	k: 4452	n:60000
KS ci ratio: 5.597666e-01	ci left: 5.899139e-04	ci right 1.060546e-03	k: 48	n:60000
ZNF167   60000 perm   15 sec   (4042 perm/sec)   p_kst 8.000000e-04   p_cons 7.420000e-02   p_joint 2.600000e-03

Joint ci ratio: 3.207947e-01	ci left: 1.787663e-03	ci right 2.483213e-03	k: 148	n:70000
Cons ci ratio: 5.228595e-02	ci left: 7.238184e-02	ci right 7.628210e-02	k: 5202	n:70000
KS ci ratio: 5.058493e-01	ci left: 6.416819e-04	ci right 1.087091e-03	k: 59	n:70000
ZNF167   70000 perm   18 sec   (3969 perm/sec)   p_kst 8.428571e-04   p_cons 7.431429e-02   p_joint 2.114286e-03

Joint ci ratio: 2.959980e-01	ci left: 1.864105e-03	ci right 2.522831e-03	k: 174	n:80000
Cons ci ratio: 4.882169e-02	ci left: 7.275143e-02	ci right 7.640450e-02	k: 5965	n:80000
KS ci ratio: 4.717060e-01	ci left: 6.601168e-04	ci right 1.077455e-03	k: 68	n:80000
ZNF167   80000 perm   20 sec   (3903 perm/sec)   p_kst 8.500000e-04   p_cons 7.456250e-02   p_joint 2.175000e-03

Joint ci ratio: 3.197981e-01	ci left: 1.400575e-03	ci right 1.943467e-03	k: 149	n:90000
Cons ci ratio: 4.373908e-02	ci left: 8.013845e-02	ci right 8.373299e-02	k: 7373	n:90000
KS ci ratio: 4.650323e-01	ci left: 6.063646e-04	ci right 9.825747e-04	k: 70	n:90000
ZNF167   90000 perm   23 sec   (3839 perm/sec)   p_kst 7.777778e-04   p_cons 8.192222e-02   p_joint 1.655556e-03

Joint ci ratio: 3.532353e-01	ci left: 1.013236e-03	ci right 1.456509e-03	k: 122	n:100000
Cons ci ratio: 4.152584e-02	ci left: 8.011844e-02	ci right 8.352586e-02	k: 8181	n:100000
KS ci ratio: 4.494817e-01	ci left: 5.899669e-04	ci right 9.400421e-04	k: 75	n:100000
ZNF167   100000 perm   26 sec   (3778 perm/sec)   p_kst 7.500000e-04   p_cons 8.181000e-02   p_joint 1.220000e-03

Joint ci ratio: 3.637693e-01	ci left: 8.632047e-04	ci right 1.254778e-03	k: 115	n:110000
Cons ci ratio: 3.963702e-02	ci left: 8.003379e-02	ci right 8.327922e-02	k: 8981	n:110000
KS ci ratio: 4.436932e-01	ci left: 5.524673e-04	ci right 8.748034e-04	k: 77	n:110000
ZNF167   110000 perm   30 sec   (3718 perm/sec)   p_kst 7.000000e-04   p_cons 8.164545e-02   p_joint 1.045455e-03

Joint ci ratio: 3.423036e-01	ci left: 9.051991e-04	ci right 1.286240e-03	k: 130	n:120000
Cons ci ratio: 3.804381e-02	ci left: 7.973490e-02	ci right 8.283537e-02	k: 9753	n:120000
KS ci ratio: 4.177184e-01	ci left: 5.807348e-04	ci right 8.942091e-04	k: 87	n:120000
ZNF167   120000 perm   33 sec   (3663 perm/sec)   p_kst 7.250000e-04   p_cons 8.127500e-02   p_joint 1.083333e-03

Joint ci ratio: 3.022379e-01	ci left: 1.097266e-03	ci right 1.494747e-03	k: 167	n:130000
Cons ci ratio: 3.857428e-02	ci left: 7.217100e-02	ci right 7.501729e-02	k: 9566	n:130000
KS ci ratio: 3.999340e-01	ci left: 5.912749e-04	ci right 8.932549e-04	k: 95	n:130000
ZNF167   130000 perm   36 sec   (3610 perm/sec)   p_kst 7.307692e-04   p_cons 7.358462e-02   p_joint 1.284615e-03

Joint ci ratio: 1.725855e-01	ci left: 3.354526e-03	ci right 3.994873e-03	k: 513	n:140000
Cons ci ratio: 3.720606e-02	ci left: 7.209584e-02	ci right 7.483614e-02	k: 10284	n:140000
KS ci ratio: 3.842435e-01	ci left: 6.005523e-04	ci right 8.921977e-04	k: 103	n:140000
ZNF167   140000 perm   39 sec   (3560 perm/sec)   p_kst 7.357143e-04   p_cons 7.345714e-02   p_joint 3.664286e-03

Joint ci ratio: 1.828891e-01	ci left: 2.774075e-03	ci right 3.338738e-03	k: 457	n:150000
Cons ci ratio: 3.336104e-02	ci left: 8.287884e-02	ci right 8.569726e-02	k: 12642	n:150000
KS ci ratio: 3.736190e-01	ci left: 5.967057e-04	ci right 8.765106e-04	k: 109	n:150000
ZNF167   150000 perm   43 sec   (3513 perm/sec)   p_kst 7.266667e-04   p_cons 8.428000e-02   p_joint 3.046667e-03

Joint ci ratio: 1.819135e-01	ci left: 2.630500e-03	ci right 3.162766e-03	k: 462	n:160000
Cons ci ratio: 3.230544e-02	ci left: 8.290581e-02	ci right 8.563427e-02	k: 13482	n:160000
KS ci ratio: 3.592110e-01	ci left: 6.104851e-04	ci right 8.831327e-04	k: 118	n:160000
ZNF167   160000 perm   46 sec   (3466 perm/sec)   p_kst 7.375000e-04   p_cons 8.426250e-02   p_joint 2.887500e-03

Joint ci ratio: 1.943133e-01	ci left: 2.156191e-03	ci right 2.625742e-03	k: 405	n:170000
Cons ci ratio: 3.131665e-02	ci left: 8.306519e-02	ci right 8.571371e-02	k: 14345	n:170000
KS ci ratio: 3.450048e-01	ci left: 6.281981e-04	ci right 8.951858e-04	k: 128	n:170000
ZNF167   170000 perm   50 sec   (3418 perm/sec)   p_kst 7.529412e-04   p_cons 8.438235e-02   p_joint 2.382353e-03

Joint ci ratio: 2.016782e-01	ci left: 1.883248e-03	ci right 2.310819e-03	k: 376	n:180000
Cons ci ratio: 3.035677e-02	ci left: 8.349488e-02	ci right 8.607407e-02	k: 15260	n:180000
KS ci ratio: 3.360093e-01	ci left: 6.288625e-04	ci right 8.876546e-04	k: 135	n:180000
ZNF167   180000 perm   54 sec   (3356 perm/sec)   p_kst 7.500000e-04   p_cons 8.477778e-02   p_joint 2.088889e-03

Joint ci ratio: 1.982926e-01	ci left: 1.849122e-03	ci right 2.261045e-03	k: 389	n:190000
Cons ci ratio: 2.954895e-02	ci left: 8.351970e-02	ci right 8.602983e-02	k: 16106	n:190000
KS ci ratio: 3.265420e-01	ci left: 6.343689e-04	ci right 8.865297e-04	k: 143	n:190000
ZNF167   190000 perm   57 sec   (3312 perm/sec)   p_kst 7.526316e-04   p_cons 8.476842e-02   p_joint 2.047368e-03

Joint ci ratio: 1.817698e-01	ci left: 2.109120e-03	ci right 2.535510e-03	k: 463	n:200000
Cons ci ratio: 3.019290e-02	ci left: 7.655523e-02	ci right 7.890702e-02	k: 15545	n:200000
KS ci ratio: 3.210185e-01	ci left: 6.256183e-04	ci right 8.692290e-04	k: 148	n:200000
ZNF167   200000 perm   61 sec   (3270 perm/sec)   p_kst 7.400000e-04   p_cons 7.772500e-02   p_joint 2.315000e-03

Joint ci ratio: 1.823717e-01	ci left: 1.995040e-03	ci right 2.399849e-03	k: 460	n:210000
Cons ci ratio: 2.943428e-02	ci left: 7.673351e-02	ci right 7.903054e-02	k: 16354	n:210000
KS ci ratio: 3.137338e-01	ci left: 6.265056e-04	ci right 8.638167e-04	k: 155	n:210000
ZNF167   210000 perm   65 sec   (3227 perm/sec)   p_kst 7.380952e-04   p_cons 7.787619e-02   p_joint 2.190476e-03

Joint ci ratio: 1.796673e-01	ci left: 1.965107e-03	ci right 2.357286e-03	k: 474	n:220000
Cons ci ratio: 2.875009e-02	ci left: 7.679690e-02	ci right 7.904151e-02	k: 17141	n:220000
KS ci ratio: 3.117457e-01	ci left: 6.064045e-04	ci right 8.343561e-04	k: 157	n:220000
ZNF167   220000 perm   69 sec   (3187 perm/sec)   p_kst 7.136364e-04   p_cons 7.791364e-02   p_joint 2.154545e-03

Joint ci ratio: 1.754687e-01	ci left: 1.975224e-03	ci right 2.359234e-03	k: 497	n:230000
Cons ci ratio: 2.814130e-02	ci left: 7.670415e-02	ci right 7.889781e-02	k: 17893	n:230000
KS ci ratio: 3.041405e-01	ci left: 6.121349e-04	ci right 8.355410e-04	k: 165	n:230000
ZNF167   230000 perm   73 sec   (3147 perm/sec)   p_kst 7.173913e-04   p_cons 7.779565e-02   p_joint 2.160870e-03

Joint ci ratio: 1.737374e-01	ci left: 1.932765e-03	ci right 2.304423e-03	k: 507	n:240000
Cons ci ratio: 2.754079e-02	ci left: 7.676865e-02	ci right 7.891656e-02	k: 18681	n:240000
KS ci ratio: 3.005432e-01	ci left: 6.020313e-04	ci right 8.186547e-04	k: 169	n:240000
ZNF167   240000 perm   77 sec   (3109 perm/sec)   p_kst 7.041667e-04   p_cons 7.783750e-02   p_joint 2.112500e-03

Joint ci ratio: 1.735736e-01	ci left: 1.859274e-03	ci right 2.216428e-03	k: 508	n:250000
Cons ci ratio: 2.700574e-02	ci left: 7.667739e-02	ci right 7.878041e-02	k: 19431	n:250000
KS ci ratio: 2.953765e-01	ci left: 6.001562e-04	ci right 8.116974e-04	k: 175	n:250000
ZNF167   250000 perm   81 sec   (3071 perm/sec)   p_kst 7.000000e-04   p_cons 7.772400e-02   p_joint 2.032000e-03

Joint ci ratio: 1.718967e-01	ci left: 1.824560e-03	ci right 2.171307e-03	k: 518	n:260000
Cons ci ratio: 2.649929e-02	ci left: 7.660117e-02	ci right 7.866210e-02	k: 20183	n:260000
KS ci ratio: 2.873250e-01	ci left: 6.127253e-04	ci right 8.217414e-04	k: 185	n:260000
ZNF167   260000 perm   86 sec   (3036 perm/sec)   p_kst 7.115385e-04   p_cons 7.762692e-02   p_joint 1.992308e-03

Joint ci ratio: 1.763863e-01	ci left: 1.664871e-03	ci right 1.990416e-03	k: 492	n:270000
Cons ci ratio: 2.598331e-02	ci left: 7.673343e-02	ci right 7.875712e-02	k: 20990	n:270000
KS ci ratio: 2.813379e-01	ci left: 6.175492e-04	ci right 8.230429e-04	k: 193	n:270000
ZNF167   270000 perm   90 sec   (3001 perm/sec)   p_kst 7.148148e-04   p_cons 7.774074e-02   p_joint 1.822222e-03

Joint ci ratio: 1.737637e-01	ci left: 1.656635e-03	ci right 1.975247e-03	k: 507	n:280000
Cons ci ratio: 2.553001e-02	ci left: 7.666843e-02	ci right 7.865461e-02	k: 21744	n:280000
KS ci ratio: 2.763957e-01	ci left: 6.187459e-04	ci right 8.203921e-04	k: 200	n:280000
ZNF167   280000 perm   94 sec   (2966 perm/sec)   p_kst 7.142857e-04   p_cons 7.765714e-02   p_joint 1.810714e-03

Joint ci ratio: 1.861022e-01	ci left: 1.385436e-03	ci right 1.672949e-03	k: 442	n:290000
Cons ci ratio: 2.510690e-02	ci left: 7.656706e-02	ci right 7.851726e-02	k: 22486	n:290000
KS ci ratio: 2.717051e-01	ci left: 6.198894e-04	ci right 8.178950e-04	k: 207	n:290000
ZNF167   290000 perm   99 sec   (2931 perm/sec)   p_kst 7.137931e-04   p_cons 7.753793e-02   p_joint 1.524138e-03

Joint ci ratio: 1.830294e-01	ci left: 1.386945e-03	ci right 1.669491e-03	k: 457	n:300000
Cons ci ratio: 2.466963e-02	ci left: 7.667157e-02	ci right 7.858994e-02	k: 23288	n:300000
KS ci ratio: 2.672455e-01	ci left: 6.209836e-04	ci right 8.155377e-04	k: 214	n:300000
ZNF167   300000 perm   103 sec   (2899 perm/sec)   p_kst 7.133333e-04   p_cons 7.762667e-02   p_joint 1.523333e-03

Joint ci ratio: 1.971106e-01	ci left: 1.148622e-03	ci right 1.402784e-03	k: 394	n:310000
Cons ci ratio: 2.426481e-02	ci left: 7.670866e-02	ci right 7.859602e-02	k: 24071	n:310000
KS ci ratio: 2.624078e-01	ci left: 6.250454e-04	ci right 8.167455e-04	k: 222	n:310000
ZNF167   310000 perm   108 sec   (2868 perm/sec)   p_kst 7.161290e-04   p_cons 7.764839e-02   p_joint 1.270968e-03

Joint ci ratio: 1.971145e-01	ci left: 1.112725e-03	ci right 1.358950e-03	k: 394	n:320000
Cons ci ratio: 2.389910e-02	ci left: 7.662557e-02	ci right 7.848209e-02	k: 24816	n:320000
KS ci ratio: 2.550758e-01	ci left: 6.435045e-04	ci right 8.344745e-04	k: 235	n:320000
ZNF167   320000 perm   113 sec   (2838 perm/sec)   p_kst 7.343750e-04   p_cons 7.755000e-02   p_joint 1.231250e-03

Joint ci ratio: 1.951495e-01	ci left: 1.102058e-03	ci right 1.343202e-03	k: 402	n:330000
Cons ci ratio: 2.353846e-02	ci left: 7.661404e-02	ci right 7.844188e-02	k: 25583	n:330000
KS ci ratio: 2.529425e-01	ci left: 6.353536e-04	ci right 8.220792e-04	k: 239	n:330000
ZNF167   330000 perm   118 sec   (2806 perm/sec)   p_kst 7.242424e-04   p_cons 7.752424e-02   p_joint 1.218182e-03

Joint ci ratio: 1.923075e-01	ci left: 1.103226e-03	ci right 1.340700e-03	k: 414	n:340000
Cons ci ratio: 2.318985e-02	ci left: 7.662678e-02	ci right 7.842749e-02	k: 26358	n:340000
KS ci ratio: 2.498393e-01	ci left: 6.332019e-04	ci right 8.166571e-04	k: 245	n:340000
ZNF167   340000 perm   123 sec   (2775 perm/sec)   p_kst 7.205882e-04   p_cons 7.752353e-02   p_joint 1.217647e-03

Joint ci ratio: 2.004549e-01	ci left: 9.820475e-04	ci right 1.203489e-03	k: 381	n:350000
Cons ci ratio: 2.285401e-02	ci left: 7.665319e-02	ci right 7.842809e-02	k: 27138	n:350000
KS ci ratio: 2.434865e-01	ci left: 6.499586e-04	ci right 8.327569e-04	k: 258	n:350000
ZNF167   350000 perm   127 sec   (2746 perm/sec)   p_kst 7.371429e-04   p_cons 7.753714e-02   p_joint 1.088571e-03

Joint ci ratio: 1.971281e-01	ci left: 9.890826e-04	ci right 1.207964e-03	k: 394	n:360000
Cons ci ratio: 2.255074e-02	ci left: 7.656226e-02	ci right 7.831122e-02	k: 27876	n:360000
KS ci ratio: 2.393626e-01	ci left: 6.553922e-04	ci right 8.361338e-04	k: 267	n:360000
ZNF167   360000 perm   132 sec   (2718 perm/sec)   p_kst 7.416667e-04   p_cons 7.743333e-02   p_joint 1.094444e-03

Joint ci ratio: 2.247347e-01	ci left: 7.293288e-04	ci right 9.164694e-04	k: 303	n:370000
Cons ci ratio: 2.224869e-02	ci left: 7.654361e-02	ci right 7.826842e-02	k: 28639	n:370000
KS ci ratio: 2.367278e-01	ci left: 6.529279e-04	ci right 8.307173e-04	k: 273	n:370000
ZNF167   370000 perm   137 sec   (2691 perm/sec)   p_kst 7.378378e-04   p_cons 7.740270e-02   p_joint 8.189189e-04

Joint ci ratio: 2.221915e-01	ci left: 7.275258e-04	ci right 9.118023e-04	k: 310	n:380000
Cons ci ratio: 2.196697e-02	ci left: 7.647110e-02	ci right 7.817219e-02	k: 29381	n:380000
KS ci ratio: 2.345978e-01	ci left: 6.481264e-04	ci right 8.227900e-04	k: 278	n:380000
ZNF167   380000 perm   143 sec   (2666 perm/sec)   p_kst 7.315789e-04   p_cons 7.731842e-02   p_joint 8.157895e-04

Joint ci ratio: 2.183626e-01	ci left: 7.355207e-04	ci right 9.181811e-04	k: 321	n:390000
Cons ci ratio: 2.168789e-02	ci left: 7.645348e-02	ci right 7.813230e-02	k: 30143	n:390000
KS ci ratio: 2.329350e-01	ci left: 6.411633e-04	ci right 8.125493e-04	k: 282	n:390000
ZNF167   390000 perm   148 sec   (2639 perm/sec)   p_kst 7.230769e-04   p_cons 7.728974e-02   p_joint 8.230769e-04

Joint ci ratio: 2.297106e-01	ci left: 6.439754e-04	ci right 8.133923e-04	k: 290	n:400000
Cons ci ratio: 2.140267e-02	ci left: 7.654632e-02	ci right 7.820480e-02	k: 30949	n:400000
KS ci ratio: 2.281468e-01	ci left: 6.534023e-04	ci right 8.239643e-04	k: 294	n:400000
ZNF167   400000 perm   153 sec   (2613 perm/sec)   p_kst 7.350000e-04   p_cons 7.737250e-02   p_joint 7.250000e-04

Joint ci ratio: 2.358766e-01	ci left: 5.938147e-04	ci right 7.548412e-04	k: 275	n:410000
Cons ci ratio: 2.113490e-02	ci left: 7.659109e-02	ci right 7.822952e-02	k: 31737	n:410000
KS ci ratio: 2.232785e-01	ci left: 6.673810e-04	ci right 8.373638e-04	k: 307	n:410000
ZNF167   410000 perm   158 sec   (2587 perm/sec)   p_kst 7.487805e-04   p_cons 7.740732e-02   p_joint 6.707317e-04

Joint ci ratio: 2.398236e-01	ci left: 5.595233e-04	ci right 7.141674e-04	k: 266	n:420000
Cons ci ratio: 2.088077e-02	ci left: 7.660778e-02	ci right 7.822663e-02	k: 32514	n:420000
KS ci ratio: 2.211354e-01	ci left: 6.649815e-04	ci right 8.325062e-04	k: 313	n:420000
ZNF167   420000 perm   164 sec   (2560 perm/sec)   p_kst 7.452381e-04   p_cons 7.741429e-02   p_joint 6.333333e-04

Joint ci ratio: 2.371736e-01	ci left: 5.596309e-04	ci right 7.123446e-04	k: 272	n:430000
Cons ci ratio: 2.065342e-02	ci left: 7.650113e-02	ci right 7.809992e-02	k: 33238	n:430000
KS ci ratio: 2.176955e-01	ci left: 6.714949e-04	ci right 8.376771e-04	k: 323	n:430000
ZNF167   430000 perm   170 sec   (2535 perm/sec)   p_kst 7.511628e-04   p_cons 7.729767e-02   p_joint 6.325581e-04

Joint ci ratio: 2.367418e-01	ci left: 5.490494e-04	ci right 6.985629e-04	k: 273	n:440000
Cons ci ratio: 2.043496e-02	ci left: 7.638812e-02	ci right 7.796746e-02	k: 33957	n:440000
KS ci ratio: 2.150565e-01	ci left: 6.734303e-04	ci right 8.378045e-04	k: 331	n:440000
ZNF167   440000 perm   175 sec   (2510 perm/sec)   p_kst 7.522727e-04   p_cons 7.717500e-02   p_joint 6.204545e-04

Joint ci ratio: 2.229242e-01	ci left: 6.101542e-04	ci right 7.652806e-04	k: 308	n:450000
Cons ci ratio: 1.926160e-02	ci left: 8.346989e-02	ci right 8.509547e-02	k: 37926	n:450000
KS ci ratio: 2.125113e-01	ci left: 6.752912e-04	ci right 8.379147e-04	k: 339	n:450000
ZNF167   450000 perm   181 sec   (2486 perm/sec)   p_kst 7.533333e-04   p_cons 8.428000e-02   p_joint 6.844444e-04

Joint ci ratio: 2.207911e-01	ci left: 6.092086e-04	ci right 7.624112e-04	k: 314	n:460000
Cons ci ratio: 1.904379e-02	ci left: 8.353760e-02	ci right 8.514590e-02	k: 38796	n:460000
KS ci ratio: 2.094529e-01	ci left: 6.812018e-04	ci right 8.425849e-04	k: 349	n:460000
ZNF167   460000 perm   187 sec   (2462 perm/sec)   p_kst 7.586957e-04   p_cons 8.433913e-02   p_joint 6.826087e-04

Joint ci ratio: 2.204429e-01	ci left: 5.982564e-04	ci right 7.484353e-04	k: 315	n:470000
Cons ci ratio: 1.883866e-02	ci left: 8.355804e-02	ci right 8.514922e-02	k: 39645	n:470000
KS ci ratio: 2.065228e-01	ci left: 6.868768e-04	ci right 8.470405e-04	k: 359	n:470000
ZNF167   470000 perm   193 sec   (2440 perm/sec)   p_kst 7.638298e-04   p_cons 8.435106e-02   p_joint 6.702128e-04

Joint ci ratio: 2.187197e-01	ci left: 5.956365e-04	ci right 7.438317e-04	k: 320	n:480000
Cons ci ratio: 1.865587e-02	ci left: 8.344702e-02	ci right 8.502050e-02	k: 40431	n:480000
KS ci ratio: 2.039884e-01	ci left: 6.903533e-04	ci right 8.491060e-04	k: 368	n:480000
ZNF167   480000 perm   199 sec   (2417 perm/sec)   p_kst 7.666667e-04   p_cons 8.423125e-02   p_joint 6.666667e-04

Joint ci ratio: 2.194062e-01	ci left: 5.796224e-04	ci right 7.243470e-04	k: 318	n:490000
Cons ci ratio: 1.844996e-02	ci left: 8.357635e-02	ci right 8.513469e-02	k: 41333	n:490000
KS ci ratio: 2.031652e-01	ci left: 6.820746e-04	ci right 8.382119e-04	k: 371	n:490000
ZNF167   490000 perm   205 sec   (2395 perm/sec)   p_kst 7.571429e-04   p_cons 8.435306e-02   p_joint 6.489796e-04

Joint ci ratio: 2.177070e-01	ci left: 5.774825e-04	ci right 7.204067e-04	k: 323	n:500000
Cons ci ratio: 1.826183e-02	ci left: 8.360698e-02	ci right 8.514984e-02	k: 42188	n:500000
KS ci ratio: 2.018139e-01	ci left: 6.779259e-04	ci right 8.319542e-04	k: 376	n:500000
ZNF167   500000 perm   211 sec   (2372 perm/sec)   p_kst 7.520000e-04   p_cons 8.437600e-02   p_joint 6.460000e-04

Joint ci ratio: 2.150677e-01	ci left: 5.809956e-04	ci right 7.228160e-04	k: 331	n:510000
Cons ci ratio: 1.808300e-02	ci left: 8.360525e-02	ci right 8.513281e-02	k: 43027	n:510000
KS ci ratio: 1.997061e-01	ci left: 6.795311e-04	ci right 8.321151e-04	k: 384	n:510000
ZNF167   510000 perm   217 sec   (2349 perm/sec)   p_kst 7.529412e-04   p_cons 8.436667e-02   p_joint 6.490196e-04

Joint ci ratio: 2.112821e-01	ci left: 5.916680e-04	ci right 7.332222e-04	k: 343	n:520000
Cons ci ratio: 1.789730e-02	ci left: 8.370708e-02	ci right 8.522063e-02	k: 43920	n:520000
KS ci ratio: 1.976629e-01	ci left: 6.810825e-04	ci right 8.322617e-04	k: 392	n:520000
ZNF167   520000 perm   223 sec   (2327 perm/sec)   p_kst 7.538462e-04   p_cons 8.446154e-02   p_joint 6.596154e-04

Joint ci ratio: 1.497881e-01	ci left: 1.193888e-03	ci right 1.388987e-03	k: 683	n:530000
Cons ci ratio: 1.773190e-02	ci left: 8.367736e-02	ci right 8.517624e-02	k: 44745	n:530000
KS ci ratio: 1.966653e-01	ci left: 6.754063e-04	ci right 8.244782e-04	k: 396	n:530000
ZNF167   530000 perm   230 sec   (2303 perm/sec)   p_kst 7.471698e-04   p_cons 8.442453e-02   p_joint 1.288679e-03

Joint ci ratio: 1.504520e-01	ci left: 1.161084e-03	ci right 1.351739e-03	k: 677	n:540000
Cons ci ratio: 1.756721e-02	ci left: 8.368200e-02	ci right 8.516691e-02	k: 45588	n:540000
KS ci ratio: 1.935213e-01	ci left: 6.857974e-04	ci right 8.344581e-04	k: 409	n:540000
ZNF167   540000 perm   236 sec   (2285 perm/sec)   p_kst 7.574074e-04   p_cons 8.442222e-02   p_joint 1.253704e-03

Joint ci ratio: 1.490300e-01	ci left: 1.162724e-03	ci right 1.351683e-03	k: 690	n:550000
Cons ci ratio: 1.741625e-02	ci left: 8.360504e-02	ci right 8.507571e-02	k: 46386	n:550000
KS ci ratio: 1.914314e-01	ci left: 6.889036e-04	ci right 8.364372e-04	k: 418	n:550000
ZNF167   550000 perm   243 sec   (2266 perm/sec)   p_kst 7.600000e-04   p_cons 8.433818e-02   p_joint 1.254545e-03

Joint ci ratio: 1.475426e-01	ci left: 1.166034e-03	ci right 1.353473e-03	k: 704	n:560000
Cons ci ratio: 1.726153e-02	ci left: 8.359847e-02	ci right 8.505583e-02	k: 47222	n:560000
KS ci ratio: 1.894078e-01	ci left: 6.919071e-04	ci right 8.383374e-04	k: 427	n:560000
ZNF167   560000 perm   249 sec   (2248 perm/sec)   p_kst 7.625000e-04   p_cons 8.432500e-02   p_joint 1.257143e-03

Joint ci ratio: 1.594179e-01	ci left: 9.751712e-04	ci right 1.145755e-03	k: 603	n:570000
Cons ci ratio: 1.711474e-02	ci left: 8.355724e-02	ci right 8.500137e-02	k: 48038	n:570000
KS ci ratio: 1.878777e-01	ci left: 6.914691e-04	ci right 8.364897e-04	k: 434	n:570000
ZNF167   570000 perm   256 sec   (2230 perm/sec)   p_kst 7.614035e-04   p_cons 8.427719e-02   p_joint 1.057895e-03

Joint ci ratio: 1.582435e-01	ci left: 9.732583e-04	ci right 1.142134e-03	k: 612	n:580000
Cons ci ratio: 1.695819e-02	ci left: 8.363943e-02	ci right 8.507162e-02	k: 48925	n:580000
KS ci ratio: 1.859636e-01	ci left: 6.943385e-04	ci right 8.383099e-04	k: 443	n:580000
ZNF167   580000 perm   263 sec   (2209 perm/sec)   p_kst 7.637931e-04   p_cons 8.435345e-02   p_joint 1.055172e-03

Joint ci ratio: 1.569684e-01	ci left: 9.730431e-04	ci right 1.140393e-03	k: 622	n:590000
Cons ci ratio: 1.681636e-02	ci left: 8.362264e-02	ci right 8.504246e-02	k: 49755	n:590000
KS ci ratio: 1.843105e-01	ci left: 6.955010e-04	ci right 8.382882e-04	k: 451	n:590000
ZNF167   590000 perm   270 sec   (2188 perm/sec)   p_kst 7.644068e-04   p_cons 8.433051e-02   p_joint 1.054237e-03

Joint ci ratio: 1.559705e-01	ci left: 9.696368e-04	ci right 1.135241e-03	k: 630	n:600000
Cons ci ratio: 1.667030e-02	ci left: 8.367786e-02	ci right 8.508616e-02	k: 50628	n:600000
KS ci ratio: 1.823045e-01	ci left: 6.998114e-04	ci right 8.417471e-04	k: 461	n:600000
ZNF167   600000 perm   276 sec   (2171 perm/sec)   p_kst 7.683333e-04   p_cons 8.438000e-02   p_joint 1.050000e-03

Joint ci ratio: 1.551130e-01	ci left: 9.647697e-04	ci right 1.128553e-03	k: 637	n:610000
Cons ci ratio: 1.652832e-02	ci left: 8.372805e-02	ci right 8.512508e-02	k: 51499	n:610000
KS ci ratio: 1.807463e-01	ci left: 7.008580e-04	ci right 8.416580e-04	k: 469	n:610000
ZNF167   610000 perm   283 sec   (2152 perm/sec)   p_kst 7.688525e-04   p_cons 8.442459e-02   p_joint 1.044262e-03

Joint ci ratio: 1.542694e-01	ci left: 9.600620e-04	ci right 1.122078e-03	k: 644	n:620000
Cons ci ratio: 1.639248e-02	ci left: 8.375257e-02	ci right 8.513841e-02	k: 52355	n:620000
KS ci ratio: 1.803638e-01	ci left: 6.926335e-04	ci right 8.314547e-04	k: 471	n:620000
ZNF167   620000 perm   291 sec   (2134 perm/sec)   p_kst 7.596774e-04   p_cons 8.444355e-02   p_joint 1.038710e-03

Joint ci ratio: 1.533218e-01	ci left: 9.570326e-04	ci right 1.117454e-03	k: 652	n:630000
Cons ci ratio: 1.626211e-02	ci left: 8.375580e-02	ci right 8.513057e-02	k: 53198	n:630000
KS ci ratio: 1.790411e-01	ci left: 6.922507e-04	ci right 8.298674e-04	k: 478	n:630000
ZNF167   630000 perm   298 sec   (2115 perm/sec)   p_kst 7.587302e-04   p_cons 8.444127e-02   p_joint 1.034921e-03

Joint ci ratio: 1.520464e-01	ci left: 9.586098e-04	ci right 1.117837e-03	k: 663	n:640000
Cons ci ratio: 1.614115e-02	ci left: 8.369825e-02	ci right 8.506176e-02	k: 54002	n:640000
KS ci ratio: 1.782987e-01	ci left: 6.874046e-04	ci right 8.234301e-04	k: 482	n:640000
ZNF167   640000 perm   305 sec   (2098 perm/sec)   p_kst 7.531250e-04   p_cons 8.437812e-02   p_joint 1.035937e-03

Joint ci ratio: 1.508024e-01	ci left: 9.601439e-04	ci right 1.118203e-03	k: 674	n:650000
Cons ci ratio: 1.601058e-02	ci left: 8.376054e-02	ci right 8.511393e-02	k: 54883	n:650000
KS ci ratio: 1.766602e-01	ci left: 6.900603e-04	ci right 8.252225e-04	k: 491	n:650000
ZNF167   650000 perm   312 sec   (2081 perm/sec)   p_kst 7.553846e-04   p_cons 8.443538e-02   p_joint 1.036923e-03

Joint ci ratio: 1.532080e-01	ci left: 9.149866e-04	ci right 1.068236e-03	k: 653	n:660000
Cons ci ratio: 1.589418e-02	ci left: 8.371380e-02	ci right 8.505651e-02	k: 55693	n:660000
KS ci ratio: 1.757697e-01	ci left: 6.868463e-04	ci right 8.206288e-04	k: 496	n:660000
ZNF167   660000 perm   320 sec   (2064 perm/sec)   p_kst 7.515152e-04   p_cons 8.438333e-02   p_joint 9.893939e-04

Joint ci ratio: 1.517073e-01	ci left: 9.199930e-04	ci right 1.072434e-03	k: 666	n:670000
Cons ci ratio: 1.576946e-02	ci left: 8.377409e-02	ci right 8.510712e-02	k: 56574	n:670000
KS ci ratio: 1.752422e-01	ci left: 6.808756e-04	ci right 8.130550e-04	k: 499	n:670000
ZNF167   670000 perm   327 sec   (2047 perm/sec)   p_kst 7.447761e-04   p_cons 8.443881e-02   p_joint 9.940299e-04

Joint ci ratio: 1.508059e-01	ci left: 9.177831e-04	ci right 1.068873e-03	k: 674	n:680000
Cons ci ratio: 1.566104e-02	ci left: 8.370075e-02	ci right 8.502338e-02	k: 57365	n:680000
KS ci ratio: 1.745458e-01	ci left: 6.764875e-04	ci right 8.072381e-04	k: 503	n:680000
ZNF167   680000 perm   335 sec   (2031 perm/sec)   p_kst 7.397059e-04   p_cons 8.436029e-02   p_joint 9.911765e-04

Joint ci ratio: 1.501405e-01	ci left: 9.128500e-04	ci right 1.062405e-03	k: 680	n:690000
Cons ci ratio: 1.554621e-02	ci left: 8.371478e-02	ci right 8.502784e-02	k: 58215	n:690000
KS ci ratio: 1.733462e-01	ci left: 6.763866e-04	ci right 8.061252e-04	k: 510	n:690000
ZNF167   690000 perm   343 sec   (2015 perm/sec)   p_kst 7.391304e-04   p_cons 8.436957e-02   p_joint 9.855072e-04

Joint ci ratio: 1.491582e-01	ci left: 9.121849e-04	ci right 1.060566e-03	k: 689	n:700000
Cons ci ratio: 1.543929e-02	ci left: 8.367434e-02	ci right 8.497767e-02	k: 59027	n:700000
KS ci ratio: 1.715096e-01	ci left: 6.817602e-04	ci right 8.110007e-04	k: 521	n:700000
ZNF167   700000 perm   350 sec   (1998 perm/sec)   p_kst 7.442857e-04   p_cons 8.432429e-02   p_joint 9.842857e-04

Joint ci ratio: 1.476672e-01	ci left: 9.183236e-04	ci right 1.066078e-03	k: 703	n:710000
Cons ci ratio: 1.532434e-02	ci left: 8.373754e-02	ci right 8.503205e-02	k: 59912	n:710000
KS ci ratio: 1.708567e-01	ci left: 6.775502e-04	ci right 8.054532e-04	k: 525	n:710000
ZNF167   710000 perm   358 sec   (1982 perm/sec)   p_kst 7.394366e-04   p_cons 8.438310e-02   p_joint 9.901408e-04

Joint ci ratio: 1.520552e-01	ci left: 8.520940e-04	ci right 9.936376e-04	k: 663	n:720000
Cons ci ratio: 1.521138e-02	ci left: 8.380455e-02	ci right 8.509046e-02	k: 60801	n:720000
KS ci ratio: 1.702111e-01	ci left: 6.734581e-04	ci right 8.000590e-04	k: 529	n:720000
ZNF167   720000 perm   366 sec   (1969 perm/sec)   p_kst 7.347222e-04   p_cons 8.444583e-02   p_joint 9.208333e-04

Joint ci ratio: 1.512603e-01	ci left: 8.496466e-04	ci right 9.899789e-04	k: 670	n:730000
Cons ci ratio: 1.510529e-02	ci left: 8.382471e-02	ci right 8.510188e-02	k: 61657	n:730000
KS ci ratio: 1.694141e-01	ci left: 6.707908e-04	ci right 7.962395e-04	k: 534	n:730000
ZNF167   730000 perm   373 sec   (1955 perm/sec)   p_kst 7.315068e-04   p_cons 8.446164e-02   p_joint 9.178082e-04

Joint ci ratio: 1.505888e-01	ci left: 8.459667e-04	ci right 9.850150e-04	k: 676	n:740000
Cons ci ratio: 1.500309e-02	ci left: 8.382684e-02	ci right 8.509533e-02	k: 62500	n:740000
KS ci ratio: 1.687847e-01	ci left: 6.669026e-04	ci right 7.911137e-04	k: 538	n:740000
ZNF167   740000 perm   382 sec   (1938 perm/sec)   p_kst 7.270270e-04   p_cons 8.445946e-02   p_joint 9.135135e-04

Joint ci ratio: 1.492714e-01	ci left: 8.500870e-04	ci right 9.884811e-04	k: 688	n:750000
Cons ci ratio: 1.490282e-02	ci left: 8.383028e-02	ci right 8.509027e-02	k: 63344	n:750000
KS ci ratio: 1.672402e-01	ci left: 6.707834e-04	ci right 7.944588e-04	k: 548	n:750000
ZNF167   750000 perm   390 sec   (1924 perm/sec)   p_kst 7.306667e-04   p_cons 8.445867e-02   p_joint 9.173333e-04

Joint ci ratio: 1.486260e-01	ci left: 8.465020e-04	ci right 9.836637e-04	k: 694	n:760000
Cons ci ratio: 1.480276e-02	ci left: 8.385201e-02	ci right 8.510379e-02	k: 64202	n:760000
KS ci ratio: 1.669370e-01	ci left: 6.644786e-04	ci right 7.867472e-04	k: 550	n:760000
ZNF167   760000 perm   398 sec   (1911 perm/sec)   p_kst 7.236842e-04   p_cons 8.447632e-02   p_joint 9.131579e-04

Joint ci ratio: 1.475680e-01	ci left: 8.480143e-04	ci right 9.843567e-04	k: 704	n:770000
Cons ci ratio: 1.471569e-02	ci left: 8.375800e-02	ci right 8.500097e-02	k: 64971	n:770000
KS ci ratio: 1.650012e-01	ci left: 6.720311e-04	ci right 7.941131e-04	k: 563	n:770000
ZNF167   770000 perm   406 sec   (1898 perm/sec)   p_kst 7.311688e-04   p_cons 8.437792e-02   p_joint 9.142857e-04

Joint ci ratio: 1.472557e-01	ci left: 8.408464e-04	ci right 9.757249e-04	k: 707	n:780000
Cons ci ratio: 1.461569e-02	ci left: 8.381849e-02	ci right 8.505383e-02	k: 65859	n:780000
KS ci ratio: 1.639867e-01	ci left: 6.720203e-04	ci right 7.932757e-04	k: 570	n:780000
ZNF167   780000 perm   414 sec   (1884 perm/sec)   p_kst 7.307692e-04   p_cons 8.443462e-02   p_joint 9.064103e-04

Joint ci ratio: 1.464308e-01	ci left: 8.399573e-04	ci right 9.738724e-04	k: 715	n:790000
Cons ci ratio: 1.452222e-02	ci left: 8.382953e-02	ci right 8.505706e-02	k: 66709	n:790000
KS ci ratio: 1.629907e-01	ci left: 6.720119e-04	ci right 7.924572e-04	k: 577	n:790000
ZNF167   790000 perm   423 sec   (1870 perm/sec)   p_kst 7.303797e-04   p_cons 8.444177e-02   p_joint 9.050633e-04

Joint ci ratio: 1.461255e-01	ci left: 8.330704e-04	ci right 9.655864e-04	k: 718	n:800000
Cons ci ratio: 1.443099e-02	ci left: 8.383533e-02	ci right 8.505518e-02	k: 67555	n:800000
KS ci ratio: 1.628506e-01	ci left: 6.648106e-04	ci right 7.838526e-04	k: 578	n:800000
ZNF167   800000 perm   431 sec   (1856 perm/sec)   p_kst 7.225000e-04   p_cons 8.444375e-02   p_joint 8.975000e-04

Joint ci ratio: 1.449209e-01	ci left: 8.370611e-04	ci right 9.690193e-04	k: 730	n:810000
Cons ci ratio: 1.434111e-02	ci left: 8.384471e-02	ci right 8.505703e-02	k: 68404	n:810000
KS ci ratio: 1.613250e-01	ci left: 6.696326e-04	ci right 7.883059e-04	k: 589	n:810000
ZNF167   810000 perm   439 sec   (1843 perm/sec)   p_kst 7.271605e-04   p_cons 8.444938e-02   p_joint 9.012346e-04

Joint ci ratio: 1.438425e-01	ci left: 8.397831e-04	ci right 9.711008e-04	k: 741	n:820000
Cons ci ratio: 1.425323e-02	ci left: 8.385023e-02	ci right 8.505514e-02	k: 69250	n:820000
KS ci ratio: 1.605110e-01	ci left: 6.684887e-04	ci right 7.863039e-04	k: 595	n:820000
ZNF167   820000 perm   448 sec   (1830 perm/sec)   p_kst 7.256098e-04   p_cons 8.445122e-02   p_joint 9.036585e-04

Joint ci ratio: 1.451213e-01	ci left: 8.145680e-04	ci right 9.431733e-04	k: 728	n:830000
Cons ci ratio: 1.417048e-02	ci left: 8.381722e-02	ci right 8.501460e-02	k: 70064	n:830000
KS ci ratio: 1.599754e-01	ci left: 6.650606e-04	ci right 7.818429e-04	k: 599	n:830000
ZNF167   830000 perm   457 sec   (1817 perm/sec)   p_kst 7.216867e-04   p_cons 8.441446e-02   p_joint 8.771084e-04

Joint ci ratio: 1.442337e-01	ci left: 8.151972e-04	ci right 9.430469e-04	k: 737	n:840000
Cons ci ratio: 1.408839e-02	ci left: 8.379331e-02	ci right 8.498337e-02	k: 70885	n:840000
KS ci ratio: 1.591816e-01	ci left: 6.640008e-04	ci right 7.799632e-04	k: 605	n:840000
ZNF167   840000 perm   465 sec   (1805 perm/sec)   p_kst 7.202381e-04   p_cons 8.438690e-02   p_joint 8.773810e-04

Joint ci ratio: 1.439419e-01	ci left: 8.090087e-04	ci right 9.356090e-04	k: 740	n:850000
Cons ci ratio: 1.400750e-02	ci left: 8.377234e-02	ci right 8.495521e-02	k: 71708	n:850000
KS ci ratio: 1.582701e-01	ci left: 6.640972e-04	ci right 7.793492e-04	k: 612	n:850000
ZNF167   850000 perm   474 sec   (1793 perm/sec)   p_kst 7.200000e-04   p_cons 8.436235e-02   p_joint 8.705882e-04

Joint ci ratio: 1.447267e-01	ci left: 7.906347e-04	ci right 9.150925e-04	k: 732	n:860000
Cons ci ratio: 1.392337e-02	ci left: 8.380287e-02	ci right 8.497900e-02	k: 72575	n:860000
KS ci ratio: 1.571207e-01	ci left: 6.664273e-04	ci right 7.811647e-04	k: 621	n:860000
ZNF167   860000 perm   483 sec   (1781 perm/sec)   p_kst 7.220930e-04   p_cons 8.438953e-02   p_joint 8.511628e-04

Joint ci ratio: 1.438463e-01	ci left: 7.915183e-04	ci right 9.152922e-04	k: 741	n:870000
Cons ci ratio: 1.384703e-02	ci left: 8.376282e-02	ci right 8.493190e-02	k: 73381	n:870000
KS ci ratio: 1.568692e-01	ci left: 6.609757e-04	ci right 7.745751e-04	k: 623	n:870000
ZNF167   870000 perm   492 sec   (1770 perm/sec)   p_kst 7.160920e-04   p_cons 8.434598e-02   p_joint 8.517241e-04

Joint ci ratio: 1.435568e-01	ci left: 7.858101e-04	ci right 9.084229e-04	k: 744	n:880000
Cons ci ratio: 1.377000e-02	ci left: 8.374523e-02	ci right 8.490751e-02	k: 74206	n:880000
KS ci ratio: 1.564939e-01	ci left: 6.567399e-04	ci right 7.693159e-04	k: 626	n:880000
ZNF167   880000 perm   501 sec   (1757 perm/sec)   p_kst 7.113636e-04   p_cons 8.432500e-02   p_joint 8.454545e-04

Joint ci ratio: 1.428872e-01	ci left: 7.845641e-04	ci right 9.063628e-04	k: 751	n:890000
Cons ci ratio: 1.369254e-02	ci left: 8.374709e-02	ci right 8.490281e-02	k: 75048	n:890000
KS ci ratio: 1.559973e-01	ci left: 6.536794e-04	ci right 7.653420e-04	k: 630	n:890000
ZNF167   890000 perm   510 sec   (1745 perm/sec)   p_kst 7.078652e-04   p_cons 8.432360e-02   p_joint 8.438202e-04

Joint ci ratio: 1.466440e-01	ci left: 7.351522e-04	ci right 8.525436e-04	k: 713	n:900000
Cons ci ratio: 1.361580e-02	ci left: 8.375558e-02	ci right 8.490488e-02	k: 75896	n:900000
KS ci ratio: 1.546548e-01	ci left: 6.581636e-04	ci right 7.695349e-04	k: 641	n:900000
ZNF167   900000 perm   519 sec   (1734 perm/sec)   p_kst 7.122222e-04   p_cons 8.432889e-02   p_joint 7.922222e-04

Joint ci ratio: 1.464396e-01	ci left: 7.291906e-04	ci right 8.454535e-04	k: 715	n:910000
Cons ci ratio: 1.353994e-02	ci left: 8.376827e-02	ci right 8.491130e-02	k: 76748	n:910000
KS ci ratio: 1.537000e-01	ci left: 6.593831e-04	ci right 7.702086e-04	k: 649	n:910000
ZNF167   910000 perm   528 sec   (1723 perm/sec)   p_kst 7.131868e-04   p_cons 8.433846e-02   p_joint 7.857143e-04

Joint ci ratio: 1.463379e-01	ci left: 7.223116e-04	ci right 8.373908e-04	k: 716	n:920000
Cons ci ratio: 1.346240e-02	ci left: 8.381430e-02	ci right 8.495136e-02	k: 77631	n:920000
KS ci ratio: 1.528791e-01	ci left: 6.595327e-04	ci right 7.697370e-04	k: 656	n:920000
ZNF167   920000 perm   538 sec   (1711 perm/sec)   p_kst 7.130435e-04   p_cons 8.438152e-02   p_joint 7.782609e-04

Joint ci ratio: 1.454280e-01	ci left: 7.238690e-04	ci right 8.384169e-04	k: 725	n:930000
Cons ci ratio: 1.339223e-02	ci left: 8.378968e-02	ci right 8.492043e-02	k: 78449	n:930000
KS ci ratio: 1.526473e-01	ci left: 6.545092e-04	ci right 7.636931e-04	k: 658	n:930000
ZNF167   930000 perm   547 sec   (1700 perm/sec)   p_kst 7.075269e-04   p_cons 8.435376e-02   p_joint 7.795699e-04

Joint ci ratio: 1.451288e-01	ci left: 7.192436e-04	ci right 8.328052e-04	k: 728	n:940000
Cons ci ratio: 1.332012e-02	ci left: 8.380060e-02	ci right 8.492536e-02	k: 79300	n:940000
KS ci ratio: 1.515019e-01	ci left: 6.577799e-04	ci right 7.666114e-04	k: 668	n:940000
ZNF167   940000 perm   557 sec   (1689 perm/sec)   p_kst 7.106383e-04   p_cons 8.436170e-02   p_joint 7.744681e-04

Joint ci ratio: 1.445354e-01	ci left: 7.177595e-04	ci right 8.305834e-04	k: 734	n:950000
Cons ci ratio: 1.325188e-02	ci left: 8.377982e-02	ci right 8.489850e-02	k: 80121	n:950000
KS ci ratio: 1.508272e-01	ci left: 6.569328e-04	ci right 7.650964e-04	k: 674	n:950000
ZNF167   950000 perm   566 sec   (1678 perm/sec)   p_kst 7.094737e-04   p_cons 8.433789e-02   p_joint 7.726316e-04

Joint ci ratio: 1.460349e-01	ci left: 6.952253e-04	ci right 8.057396e-04	k: 719	n:960000
Cons ci ratio: 1.318725e-02	ci left: 8.372938e-02	ci right 8.484188e-02	k: 80913	n:960000
KS ci ratio: 1.503825e-01	ci left: 6.540993e-04	ci right 7.614503e-04	k: 678	n:960000
ZNF167   960000 perm   576 sec   (1667 perm/sec)   p_kst 7.062500e-04   p_cons 8.428437e-02   p_joint 7.489583e-04

Joint ci ratio: 1.453302e-01	ci left: 6.950114e-04	ci right 8.049124e-04	k: 726	n:970000
Cons ci ratio: 1.311847e-02	ci left: 8.373960e-02	ci right 8.484639e-02	k: 81763	n:970000
KS ci ratio: 1.500517e-01	ci left: 6.503324e-04	ci right 7.568094e-04	k: 681	n:970000
ZNF167   970000 perm   585 sec   (1657 perm/sec)   p_kst 7.020619e-04   p_cons 8.429175e-02   p_joint 7.484536e-04

Joint ci ratio: 1.446356e-01	ci left: 6.948032e-04	ci right 8.041008e-04	k: 733	n:980000
Cons ci ratio: 1.305076e-02	ci left: 8.374962e-02	ci right 8.485080e-02	k: 82613	n:980000
KS ci ratio: 1.489633e-01	ci left: 6.535188e-04	ci right 7.596722e-04	k: 691	n:980000
ZNF167   980000 perm   595 sec   (1647 perm/sec)   p_kst 7.051020e-04   p_cons 8.429898e-02   p_joint 7.479592e-04

Joint ci ratio: 1.436601e-01	ci left: 6.975218e-04	ci right 8.064435e-04	k: 743	n:990000
Cons ci ratio: 1.298629e-02	ci left: 8.373327e-02	ci right 8.482875e-02	k: 83437	n:990000
KS ci ratio: 1.480039e-01	ci left: 6.556709e-04	ci right 7.614271e-04	k: 700	n:990000
ZNF167   990000 perm   605 sec   (1636 perm/sec)   p_kst 7.070707e-04   p_cons 8.427980e-02   p_joint 7.505051e-04

Joint ci ratio: 1.430844e-01	ci left: 6.963313e-04	ci right 8.045942e-04	k: 749	n:1000000
Cons ci ratio: 1.291825e-02	ci left: 8.377111e-02	ci right 8.486130e-02	k: 84315	n:1000000
KS ci ratio: 1.468558e-01	ci left: 6.597085e-04	ci right 7.652182e-04	k: 711	n:1000000
ZNF167   1000000 perm   615 sec   (1626 perm/sec)   p_kst 7.110000e-04   p_cons 8.431500e-02   p_joint 7.490000e-04

Joint ci ratio: 1.420463e-01	ci left: 6.999397e-04	ci right 8.079071e-04	k: 760	n:1010000
Cons ci ratio: 1.285259e-02	ci left: 8.379241e-02	ci right 8.487730e-02	k: 85177	n:1010000
KS ci ratio: 1.456334e-01	ci left: 6.646233e-04	ci right 7.699573e-04	k: 723	n:1010000
ZNF167   1010000 perm   625 sec   (1616 perm/sec)   p_kst 7.158416e-04   p_cons 8.433366e-02   p_joint 7.524752e-04

Joint ci ratio: 1.422340e-01	ci left: 6.911862e-04	ci right 7.979563e-04	k: 758	n:1020000
Cons ci ratio: 1.278938e-02	ci left: 8.379572e-02	ci right 8.487527e-02	k: 86021	n:1020000
KS ci ratio: 1.455333e-01	ci left: 6.590519e-04	ci right 7.634249e-04	k: 724	n:1020000
ZNF167   1020000 perm   635 sec   (1607 perm/sec)   p_kst 7.098039e-04   p_cons 8.433431e-02   p_joint 7.431373e-04

Joint ci ratio: 1.417679e-01	ci left: 6.891575e-04	ci right 7.952359e-04	k: 763	n:1030000
Cons ci ratio: 1.272957e-02	ci left: 8.376896e-02	ci right 8.484309e-02	k: 86834	n:1030000
KS ci ratio: 1.449349e-01	ci left: 6.582669e-04	ci right 7.620498e-04	k: 730	n:1030000
ZNF167   1030000 perm   645 sec   (1598 perm/sec)   p_kst 7.087379e-04   p_cons 8.430485e-02   p_joint 7.407767e-04

Joint ci ratio: 1.408490e-01	ci left: 6.918065e-04	ci right 7.975445e-04	k: 773	n:1040000
Cons ci ratio: 1.266783e-02	ci left: 8.377629e-02	ci right 8.484526e-02	k: 87682	n:1040000
KS ci ratio: 1.442459e-01	ci left: 6.584247e-04	ci right 7.616965e-04	k: 737	n:1040000
ZNF167   1040000 perm   655 sec   (1588 perm/sec)   p_kst 7.086538e-04   p_cons 8.430962e-02   p_joint 7.432692e-04

Joint ci ratio: 1.413070e-01	ci left: 6.806238e-04	ci right 7.850193e-04	k: 768	n:1050000
Cons ci ratio: 1.260644e-02	ci left: 8.379014e-02	ci right 8.485406e-02	k: 88537	n:1050000
KS ci ratio: 1.435667e-01	ci left: 6.585806e-04	ci right 7.613488e-04	k: 744	n:1050000
ZNF167   1050000 perm   665 sec   (1579 perm/sec)   p_kst 7.085714e-04   p_cons 8.432095e-02   p_joint 7.314286e-04

Joint ci ratio: 1.407590e-01	ci left: 6.796634e-04	ci right 7.834734e-04	k: 774	n:1060000
Cons ci ratio: 1.254700e-02	ci left: 8.379056e-02	ci right 8.484944e-02	k: 89378	n:1060000
KS ci ratio: 1.427071e-01	ci left: 6.605541e-04	ci right 7.629607e-04	k: 753	n:1060000
ZNF167   1060000 perm   675 sec   (1570 perm/sec)   p_kst 7.103774e-04   p_cons 8.431887e-02   p_joint 7.301887e-04

Joint ci ratio: 1.406687e-01	ci left: 6.742130e-04	ci right 7.771189e-04	k: 775	n:1070000
Cons ci ratio: 1.248991e-02	ci left: 8.377236e-02	ci right 8.482616e-02	k: 90199	n:1070000
KS ci ratio: 1.421428e-01	ci left: 6.597884e-04	ci right 7.616374e-04	k: 759	n:1070000
ZNF167   1070000 perm   686 sec   (1561 perm/sec)   p_kst 7.093458e-04   p_cons 8.429813e-02   p_joint 7.242991e-04

Joint ci ratio: 1.444438e-01	ci left: 6.322530e-04	ci right 7.315676e-04	k: 735	n:1080000
Cons ci ratio: 1.242994e-02	ci left: 8.379974e-02	ci right 8.484879e-02	k: 91069	n:1080000
KS ci ratio: 1.418633e-01	ci left: 6.563582e-04	ci right 7.574617e-04	k: 762	n:1080000
ZNF167   1080000 perm   696 sec   (1551 perm/sec)   p_kst 7.055556e-04   p_cons 8.432315e-02   p_joint 6.805556e-04

Joint ci ratio: 1.434722e-01	ci left: 6.352964e-04	ci right 7.343605e-04	k: 745	n:1090000
Cons ci ratio: 1.237186e-02	ci left: 8.381383e-02	ci right 8.485811e-02	k: 91925	n:1090000
KS ci ratio: 1.410339e-01	ci left: 6.583013e-04	ci right 7.590613e-04	k: 771	n:1090000
ZNF167   1090000 perm   707 sec   (1542 perm/sec)   p_kst 7.073394e-04   p_cons 8.433486e-02   p_joint 6.834862e-04

Joint ci ratio: 1.426144e-01	ci left: 6.374101e-04	ci right 7.361588e-04	k: 754	n:1100000
Cons ci ratio: 1.231276e-02	ci left: 8.385033e-02	ci right 8.489004e-02	k: 92806	n:1100000
KS ci ratio: 1.401290e-01	ci left: 6.610880e-04	ci right 7.615711e-04	k: 781	n:1100000
ZNF167   1100000 perm   718 sec   (1532 perm/sec)   p_kst 7.100000e-04   p_cons 8.436909e-02   p_joint 6.854545e-04

Joint ci ratio: 1.417717e-01	ci left: 6.394874e-04	ci right 7.379231e-04	k: 763	n:1110000
Cons ci ratio: 1.225501e-02	ci left: 8.387990e-02	ci right 8.491506e-02	k: 93680	n:1110000
KS ci ratio: 1.393294e-01	ci left: 6.629569e-04	ci right 7.631015e-04	k: 790	n:1110000
ZNF167   1110000 perm   728 sec   (1524 perm/sec)   p_kst 7.117117e-04   p_cons 8.439640e-02   p_joint 6.873874e-04

Joint ci ratio: 1.409439e-01	ci left: 6.415292e-04	ci right 7.396541e-04	k: 772	n:1120000
Cons ci ratio: 1.220222e-02	ci left: 8.385642e-02	ci right 8.488681e-02	k: 94495	n:1120000
KS ci ratio: 1.387170e-01	ci left: 6.630703e-04	ci right 7.627553e-04	k: 797	n:1120000
ZNF167   1120000 perm   739 sec   (1515 perm/sec)   p_kst 7.116071e-04   p_cons 8.437054e-02   p_joint 6.892857e-04

Joint ci ratio: 1.411271e-01	ci left: 6.341443e-04	ci right 7.312764e-04	k: 770	n:1130000
Cons ci ratio: 1.214823e-02	ci left: 8.385719e-02	ci right 8.488300e-02	k: 95337	n:1130000
KS ci ratio: 1.381126e-01	ci left: 6.631826e-04	ci right 7.624143e-04	k: 804	n:1130000
ZNF167   1130000 perm   751 sec   (1505 perm/sec)   p_kst 7.115044e-04   p_cons 8.436903e-02   p_joint 6.814159e-04

Joint ci ratio: 1.556397e-01	ci left: 5.128547e-04	ci right 6.002416e-04	k: 633	n:1140000
Cons ci ratio: 1.281316e-02	ci left: 7.538650e-02	ci right 7.635952e-02	k: 86494	n:1140000
KS ci ratio: 1.378562e-01	ci left: 6.599059e-04	ci right 7.584489e-04	k: 807	n:1140000
ZNF167   1140000 perm   762 sec   (1497 perm/sec)   p_kst 7.078947e-04   p_cons 7.587193e-02   p_joint 5.552632e-04

Joint ci ratio: 1.549084e-01	ci left: 5.134098e-04	ci right 6.004421e-04	k: 639	n:1150000
Cons ci ratio: 1.275581e-02	ci left: 7.540532e-02	ci right 7.637420e-02	k: 87272	n:1150000
KS ci ratio: 1.371787e-01	ci left: 6.608848e-04	ci right 7.590494e-04	k: 815	n:1150000
ZNF167   1150000 perm   773 sec   (1488 perm/sec)   p_kst 7.086957e-04   p_cons 7.588870e-02   p_joint 5.556522e-04

Joint ci ratio: 1.543069e-01	ci left: 5.131274e-04	ci right 5.997428e-04	k: 644	n:1160000
Cons ci ratio: 1.269797e-02	ci left: 7.543759e-02	ci right 7.640246e-02	k: 88066	n:1160000
KS ci ratio: 1.370112e-01	ci left: 6.568524e-04	ci right 7.542892e-04	k: 817	n:1160000
ZNF167   1160000 perm   784 sec   (1479 perm/sec)   p_kst 7.043103e-04   p_cons 7.591897e-02   p_joint 5.551724e-04

Joint ci ratio: 1.534762e-01	ci left: 5.144942e-04	ci right 6.008299e-04	k: 651	n:1170000
Cons ci ratio: 1.264275e-02	ci left: 7.544886e-02	ci right 7.640965e-02	k: 88836	n:1170000
KS ci ratio: 1.365115e-01	ci left: 6.561910e-04	ci right 7.531459e-04	k: 823	n:1170000
ZNF167   1170000 perm   796 sec   (1470 perm/sec)   p_kst 7.034188e-04   p_cons 7.592821e-02   p_joint 5.564103e-04

Joint ci ratio: 1.528911e-01	ci left: 5.142090e-04	ci right 6.001377e-04	k: 656	n:1180000
Cons ci ratio: 1.259259e-02	ci left: 7.541179e-02	ci right 7.636826e-02	k: 89549	n:1180000
KS ci ratio: 1.360993e-01	ci left: 6.547228e-04	ci right 7.511451e-04	k: 828	n:1180000
ZNF167   1180000 perm   807 sec   (1462 perm/sec)   p_kst 7.016949e-04   p_cons 7.588898e-02   p_joint 5.559322e-04

Joint ci ratio: 1.518543e-01	ci left: 5.171626e-04	ci right 6.029456e-04	k: 665	n:1190000
Cons ci ratio: 1.254121e-02	ci left: 7.539545e-02	ci right 7.634779e-02	k: 90286	n:1190000
KS ci ratio: 1.353664e-01	ci left: 6.565272e-04	ci right 7.526525e-04	k: 837	n:1190000
ZNF167   1190000 perm   819 sec   (1453 perm/sec)   p_kst 7.033613e-04   p_cons 7.587059e-02   p_joint 5.588235e-04

Joint ci ratio: 1.514005e-01	ci left: 5.160598e-04	ci right 6.013808e-04	k: 669	n:1200000
Cons ci ratio: 1.248682e-02	ci left: 7.542011e-02	ci right 7.636860e-02	k: 91072	n:1200000
KS ci ratio: 1.348844e-01	ci left: 6.558871e-04	ci right 7.515494e-04	k: 843	n:1200000
ZNF167   1200000 perm   831 sec   (1445 perm/sec)   p_kst 7.025000e-04   p_cons 7.589333e-02   p_joint 5.575000e-04

Joint ci ratio: 1.503935e-01	ci left: 5.189521e-04	ci right 6.041293e-04	k: 678	n:1210000
Cons ci ratio: 1.243753e-02	ci left: 7.539493e-02	ci right 7.633933e-02	k: 91798	n:1210000
KS ci ratio: 1.342496e-01	ci left: 6.568556e-04	ci right 7.521722e-04	k: 851	n:1210000
ZNF167   1210000 perm   842 sec   (1437 perm/sec)   p_kst 7.033058e-04   p_cons 7.586612e-02   p_joint 5.603306e-04

Joint ci ratio: 1.183007e-01	ci left: 8.459775e-04	ci right 9.531360e-04	k: 1096	n:1220000
Cons ci ratio: 1.198003e-02	ci left: 8.019601e-02	ci right 8.116335e-02	k: 98428	n:1220000
KS ci ratio: 1.340141e-01	ci left: 6.538479e-04	ci right 7.485485e-04	k: 854	n:1220000
ZNF167   1220000 perm   853 sec   (1429 perm/sec)   p_kst 7.000000e-04   p_cons 8.067869e-02   p_joint 8.983607e-04

Joint ci ratio: 1.176588e-01	ci left: 8.485679e-04	ci right 9.554308e-04	k: 1108	n:1230000
Cons ci ratio: 1.193259e-02	ci left: 8.018112e-02	ci right 8.114443e-02	k: 99214	n:1230000
KS ci ratio: 1.333142e-01	ci left: 6.556045e-04	ci right 7.500243e-04	k: 863	n:1230000
ZNF167   1230000 perm   865 sec   (1422 perm/sec)   p_kst 7.016260e-04   p_cons 8.066179e-02   p_joint 9.008130e-04

Joint ci ratio: 1.170794e-01	ci left: 8.503352e-04	ci right 9.568569e-04	k: 1119	n:1240000
Cons ci ratio: 1.188151e-02	ci left: 8.021876e-02	ci right 8.117836e-02	k: 100065	n:1240000
KS ci ratio: 1.327012e-01	ci left: 6.565544e-04	ci right 7.506418e-04	k: 871	n:1240000
ZNF167   1240000 perm   876 sec   (1415 perm/sec)   p_kst 7.024194e-04   p_cons 8.069758e-02   p_joint 9.024194e-04

Joint ci ratio: 1.170276e-01	ci left: 8.443089e-04	ci right 9.500257e-04	k: 1120	n:1250000
Cons ci ratio: 1.183146e-02	ci left: 8.025101e-02	ci right 8.120693e-02	k: 100910	n:1250000
KS ci ratio: 1.322471e-01	ci left: 6.559428e-04	ci right 7.495957e-04	k: 877	n:1250000
ZNF167   1250000 perm   888 sec   (1407 perm/sec)   p_kst 7.016000e-04   p_cons 8.072800e-02   p_joint 8.960000e-04

Joint ci ratio: 1.166123e-01	ci left: 8.437717e-04	ci right 9.490204e-04	k: 1128	n:1260000
Cons ci ratio: 1.178620e-02	ci left: 8.023052e-02	ci right 8.118252e-02	k: 101689	n:1260000
KS ci ratio: 1.316486e-01	ci left: 6.568766e-04	ci right 7.502051e-04	k: 885	n:1260000
ZNF167   1260000 perm   900 sec   (1399 perm/sec)   p_kst 7.023810e-04   p_cons 8.070556e-02   p_joint 8.952381e-04

Joint ci ratio: 1.177668e-01	ci left: 8.203122e-04	ci right 9.237182e-04	k: 1106	n:1270000
Cons ci ratio: 1.174009e-02	ci left: 8.022764e-02	ci right 8.117585e-02	k: 102490	n:1270000
KS ci ratio: 1.314265e-01	ci left: 6.539887e-04	ci right 7.467380e-04	k: 888	n:1270000
ZNF167   1270000 perm   913 sec   (1392 perm/sec)   p_kst 6.992126e-04   p_cons 8.070079e-02   p_joint 8.708661e-04

Joint ci ratio: 1.172384e-01	ci left: 8.214864e-04	ci right 9.245436e-04	k: 1116	n:1280000
Cons ci ratio: 1.169223e-02	ci left: 8.025364e-02	ci right 8.119826e-02	k: 103328	n:1280000
KS ci ratio: 1.306207e-01	ci left: 6.571916e-04	ci right 7.497793e-04	k: 899	n:1280000
ZNF167   1280000 perm   925 sec   (1384 perm/sec)   p_kst 7.023437e-04   p_cons 8.072500e-02   p_joint 8.718750e-04

Joint ci ratio: 1.166135e-01	ci left: 8.241486e-04	ci right 9.269508e-04	k: 1128	n:1290000
Cons ci ratio: 1.164897e-02	ci left: 8.022821e-02	ci right 8.116902e-02	k: 104100	n:1290000
KS ci ratio: 1.298295e-01	ci left: 6.603465e-04	ci right 7.527717e-04	k: 910	n:1290000
ZNF167   1290000 perm   937 sec   (1377 perm/sec)   p_kst 7.054264e-04   p_cons 8.069767e-02   p_joint 8.744186e-04

Joint ci ratio: 1.163050e-01	ci left: 8.222899e-04	ci right 9.245702e-04	k: 1134	n:1300000
Cons ci ratio: 1.160703e-02	ci left: 8.019244e-02	ci right 8.112942e-02	k: 104858	n:1300000
KS ci ratio: 1.290525e-01	ci left: 6.634545e-04	ci right 7.557165e-04	k: 921	n:1300000
ZNF167   1300000 perm   949 sec   (1370 perm/sec)   p_kst 7.084615e-04   p_cons 8.066000e-02   p_joint 8.723077e-04

Joint ci ratio: 1.158973e-01	ci left: 8.219424e-04	ci right 9.237966e-04	k: 1142	n:1310000
Cons ci ratio: 1.156184e-02	ci left: 8.020443e-02	ci right 8.113788e-02	k: 105678	n:1310000
KS ci ratio: 1.283581e-01	ci left: 6.657778e-04	ci right 7.578268e-04	k: 931	n:1310000
ZNF167   1310000 perm   962 sec   (1362 perm/sec)   p_kst 7.106870e-04   p_cons 8.067023e-02   p_joint 8.717557e-04

Joint ci ratio: 1.153935e-01	ci left: 8.230722e-04	ci right 9.245929e-04	k: 1152	n:1320000
Cons ci ratio: 1.151677e-02	ci left: 8.022153e-02	ci right 8.115152e-02	k: 106505	n:1320000
KS ci ratio: 1.277427e-01	ci left: 6.673339e-04	ci right 7.591221e-04	k: 940	n:1320000
ZNF167   1320000 perm   974 sec   (1356 perm/sec)   p_kst 7.121212e-04   p_cons 8.068561e-02   p_joint 8.727273e-04

Joint ci ratio: 1.145518e-01	ci left: 8.292983e-04	ci right 9.307903e-04	k: 1169	n:1330000
Cons ci ratio: 1.147449e-02	ci left: 8.020914e-02	ci right 8.113554e-02	k: 107293	n:1330000
KS ci ratio: 1.270692e-01	ci left: 6.695956e-04	ci right 7.611727e-04	k: 950	n:1330000
ZNF167   1330000 perm   986 sec   (1349 perm/sec)   p_kst 7.142857e-04   p_cons 8.067143e-02   p_joint 8.789474e-04

Joint ci ratio: 1.145522e-01	ci left: 8.231093e-04	ci right 9.238442e-04	k: 1169	n:1340000
Cons ci ratio: 1.143267e-02	ci left: 8.019694e-02	ci right 8.111980e-02	k: 108081	n:1340000
KS ci ratio: 1.264721e-01	ci left: 6.711020e-04	ci right 7.624216e-04	k: 959	n:1340000
ZNF167   1340000 perm   998 sec   (1342 perm/sec)   p_kst 7.156716e-04   p_cons 8.065746e-02   p_joint 8.723881e-04

Joint ci ratio: 1.150953e-01	ci left: 8.090977e-04	ci right 9.086193e-04	k: 1158	n:1350000
Cons ci ratio: 1.139011e-02	ci left: 8.020044e-02	ci right 8.111988e-02	k: 108890	n:1350000
KS ci ratio: 1.260135e-01	ci left: 6.711523e-04	ci right 7.621228e-04	k: 966	n:1350000
ZNF167   1350000 perm   1011 sec   (1335 perm/sec)   p_kst 7.155556e-04   p_cons 8.065926e-02   p_joint 8.577778e-04

Joint ci ratio: 1.146510e-01	ci left: 8.095760e-04	ci right 9.087460e-04	k: 1167	n:1360000
Cons ci ratio: 1.135067e-02	ci left: 8.016942e-02	ci right 8.108531e-02	k: 109652	n:1360000
KS ci ratio: 1.254311e-01	ci left: 6.726270e-04	ci right 7.633446e-04	k: 975	n:1360000
ZNF167   1360000 perm   1024 sec   (1328 perm/sec)   p_kst 7.169118e-04   p_cons 8.062647e-02   p_joint 8.580882e-04

Joint ci ratio: 1.146023e-01	ci left: 8.043756e-04	ci right 9.028638e-04	k: 1168	n:1370000
Cons ci ratio: 1.130974e-02	ci left: 8.016362e-02	ci right 8.107611e-02	k: 110448	n:1370000
KS ci ratio: 1.248566e-01	ci left: 6.740810e-04	ci right 7.645476e-04	k: 984	n:1370000
ZNF167   1370000 perm   1037 sec   (1321 perm/sec)   p_kst 7.182482e-04   p_cons 8.061898e-02   p_joint 8.525547e-04

Joint ci ratio: 1.139219e-01	ci left: 8.084018e-04	ci right 9.067559e-04	k: 1182	n:1380000
Cons ci ratio: 1.127041e-02	ci left: 8.014272e-02	ci right 8.105179e-02	k: 111223	n:1380000
KS ci ratio: 1.243526e-01	ci left: 6.748128e-04	ci right 7.649851e-04	k: 992	n:1380000
ZNF167   1380000 perm   1050 sec   (1314 perm/sec)   p_kst 7.188406e-04   p_cons 8.059638e-02   p_joint 8.565217e-04

Joint ci ratio: 1.138741e-01	ci left: 8.032848e-04	ci right 9.009725e-04	k: 1183	n:1390000
Cons ci ratio: 1.123017e-02	ci left: 8.013936e-02	ci right 8.104512e-02	k: 112022	n:1390000
KS ci ratio: 1.238547e-01	ci left: 6.755347e-04	ci right 7.654156e-04	k: 1000	n:1390000
ZNF167   1390000 perm   1063 sec   (1307 perm/sec)   p_kst 7.194245e-04   p_cons 8.059137e-02   p_joint 8.510791e-04

Joint ci ratio: 7.271712e-02	ci left: 1.996089e-03	ci right 2.147411e-03	k: 2899	n:1400000
Cons ci ratio: 1.119053e-02	ci left: 8.013391e-02	ci right 8.103640e-02	k: 112818	n:1400000
KS ci ratio: 1.195686e-01	ci left: 7.212663e-04	ci right 8.136762e-04	k: 1073	n:1400000
ZNF167   1400000 perm   1076 sec   (1301 perm/sec)   p_kst 7.664286e-04   p_cons 8.058429e-02   p_joint 2.070714e-03

Joint ci ratio: 7.283098e-02	ci left: 1.975665e-03	ci right 2.125683e-03	k: 2890	n:1410000
Cons ci ratio: 1.115242e-02	ci left: 8.011369e-02	ci right 8.101285e-02	k: 113593	n:1410000
KS ci ratio: 1.192914e-01	ci left: 7.195911e-04	ci right 8.115575e-04	k: 1078	n:1410000
ZNF167   1410000 perm   1090 sec   (1294 perm/sec)   p_kst 7.645390e-04   p_cons 8.056241e-02   p_joint 2.049645e-03

Joint ci ratio: 7.254293e-02	ci left: 1.977655e-03	ci right 2.127205e-03	k: 2913	n:1420000
Cons ci ratio: 1.111417e-02	ci left: 8.010079e-02	ci right 8.099670e-02	k: 114378	n:1420000
KS ci ratio: 1.189063e-01	ci left: 7.193063e-04	ci right 8.109187e-04	k: 1085	n:1420000
ZNF167   1420000 perm   1103 sec   (1288 perm/sec)   p_kst 7.640845e-04   p_cons 8.054789e-02   p_joint 2.051408e-03

Joint ci ratio: 7.218441e-02	ci left: 1.983738e-03	ci right 2.132976e-03	k: 2942	n:1430000
Cons ci ratio: 1.107496e-02	ci left: 8.010620e-02	ci right 8.099900e-02	k: 115189	n:1430000
KS ci ratio: 1.183085e-01	ci left: 7.217403e-04	ci right 8.131683e-04	k: 1096	n:1430000
ZNF167   1430000 perm   1116 sec   (1281 perm/sec)   p_kst 7.664336e-04   p_cons 8.055175e-02   p_joint 2.057343e-03

Joint ci ratio: 7.274435e-02	ci left: 1.939276e-03	ci right 2.086349e-03	k: 2897	n:1440000
Cons ci ratio: 1.103382e-02	ci left: 8.014272e-02	ci right 8.103258e-02	k: 116045	n:1440000
KS ci ratio: 1.175605e-01	ci left: 7.261637e-04	ci right 8.175301e-04	k: 1110	n:1440000
ZNF167   1440000 perm   1129 sec   (1275 perm/sec)   p_kst 7.708333e-04   p_cons 8.058681e-02   p_joint 2.011806e-03

Joint ci ratio: 7.253200e-02	ci left: 1.937413e-03	ci right 2.083898e-03	k: 2914	n:1450000
Cons ci ratio: 1.099698e-02	ci left: 8.012714e-02	ci right 8.101384e-02	k: 116826	n:1450000
KS ci ratio: 1.170871e-01	ci left: 7.271805e-04	ci right 8.182809e-04	k: 1119	n:1450000
ZNF167   1450000 perm   1143 sec   (1269 perm/sec)   p_kst 7.717241e-04   p_cons 8.056966e-02   p_joint 2.009655e-03

Joint ci ratio: 7.225979e-02	ci left: 1.938939e-03	ci right 2.084965e-03	k: 2936	n:1460000
Cons ci ratio: 1.095722e-02	ci left: 8.015620e-02	ci right 8.103999e-02	k: 117672	n:1460000
KS ci ratio: 1.166712e-01	ci left: 7.275191e-04	ci right 8.183158e-04	k: 1127	n:1460000
ZNF167   1460000 perm   1156 sec   (1262 perm/sec)   p_kst 7.719178e-04   p_cons 8.059726e-02   p_joint 2.010959e-03

Joint ci ratio: 7.230964e-02	ci left: 1.923077e-03	ci right 2.068012e-03	k: 2932	n:1470000
Cons ci ratio: 1.091938e-02	ci left: 8.016450e-02	ci right 8.104532e-02	k: 118488	n:1470000
KS ci ratio: 1.163109e-01	ci left: 7.271931e-04	ci right 8.176496e-04	k: 1134	n:1470000
ZNF167   1470000 perm   1170 sec   (1256 perm/sec)   p_kst 7.714286e-04   p_cons 8.060408e-02   p_joint 1.994558e-03

Joint ci ratio: 7.299916e-02	ci left: 1.873594e-03	ci right 2.016204e-03	k: 2877	n:1480000
Cons ci ratio: 1.088362e-02	ci left: 8.014978e-02	ci right 8.102753e-02	k: 119270	n:1480000
KS ci ratio: 1.158524e-01	ci left: 7.281842e-04	ci right 8.183825e-04	k: 1143	n:1480000
ZNF167   1480000 perm   1184 sec   (1250 perm/sec)   p_kst 7.722973e-04   p_cons 8.058784e-02   p_joint 1.943919e-03

Joint ci ratio: 7.435806e-02	ci left: 1.792504e-03	ci right 1.931591e-03	k: 2773	n:1490000
Cons ci ratio: 1.084846e-02	ci left: 8.013192e-02	ci right 8.100662e-02	k: 120047	n:1490000
KS ci ratio: 1.154996e-01	ci left: 7.278591e-04	ci right 8.177239e-04	k: 1150	n:1490000
ZNF167   1490000 perm   1198 sec   (1244 perm/sec)   p_kst 7.718121e-04   p_cons 8.056846e-02   p_joint 1.861074e-03

Joint ci ratio: 7.417124e-02	ci left: 1.789714e-03	ci right 1.928221e-03	k: 2787	n:1500000
Cons ci ratio: 1.081105e-02	ci left: 8.014955e-02	ci right 8.102141e-02	k: 120877	n:1500000
KS ci ratio: 1.153495e-01	ci left: 7.249489e-04	ci right 8.143302e-04	k: 1153	n:1500000
ZNF167   1500000 perm   1212 sec   (1238 perm/sec)   p_kst 7.686667e-04   p_cons 8.058467e-02   p_joint 1.858000e-03

Joint ci ratio: 7.393298e-02	ci left: 1.789561e-03	ci right 1.927592e-03	k: 2805	n:1510000
Cons ci ratio: 1.077586e-02	ci left: 8.014184e-02	ci right 8.101076e-02	k: 121669	n:1510000
KS ci ratio: 1.148036e-01	ci left: 7.272230e-04	ci right 8.164315e-04	k: 1164	n:1510000
ZNF167   1510000 perm   1226 sec   (1232 perm/sec)   p_kst 7.708609e-04   p_cons 8.057550e-02   p_joint 1.857616e-03

Joint ci ratio: 7.374934e-02	ci left: 1.786828e-03	ci right 1.924292e-03	k: 2819	n:1520000
Cons ci ratio: 1.074154e-02	ci left: 8.012702e-02	ci right 8.099300e-02	k: 122450	n:1520000
KS ci ratio: 1.147054e-01	ci left: 7.237166e-04	ci right 8.124139e-04	k: 1166	n:1520000
ZNF167   1520000 perm   1240 sec   (1226 perm/sec)   p_kst 7.671053e-04   p_cons 8.055921e-02   p_joint 1.854605e-03

Joint ci ratio: 7.342444e-02	ci left: 1.791189e-03	ci right 1.928355e-03	k: 2844	n:1530000
Cons ci ratio: 1.070343e-02	ci left: 8.016912e-02	ci right 8.103246e-02	k: 123318	n:1530000
KS ci ratio: 1.142655e-01	ci left: 7.247004e-04	ci right 8.131547e-04	k: 1175	n:1530000
ZNF167   1530000 perm   1254 sec   (1220 perm/sec)   p_kst 7.679739e-04   p_cons 8.060000e-02   p_joint 1.858824e-03

Joint ci ratio: 7.314210e-02	ci left: 1.793582e-03	ci right 1.930380e-03	k: 2866	n:1540000
Cons ci ratio: 1.066788e-02	ci left: 8.018089e-02	ci right 8.104147e-02	k: 124140	n:1540000
KS ci ratio: 1.137827e-01	ci left: 7.263029e-04	ci right 8.145531e-04	k: 1185	n:1540000
ZNF167   1540000 perm   1268 sec   (1214 perm/sec)   p_kst 7.694805e-04   p_cons 8.061039e-02   p_joint 1.861039e-03

Joint ci ratio: 7.298967e-02	ci left: 1.789611e-03	ci right 1.925810e-03	k: 2878	n:1550000
Cons ci ratio: 1.063115e-02	ci left: 8.021374e-02	ci right 8.107169e-02	k: 124995	n:1550000
KS ci ratio: 1.134484e-01	ci left: 7.260048e-04	ci right 8.139423e-04	k: 1192	n:1550000
ZNF167   1550000 perm   1283 sec   (1209 perm/sec)   p_kst 7.690323e-04   p_cons 8.064194e-02   p_joint 1.856774e-03

Joint ci ratio: 7.309191e-02	ci left: 1.773104e-03	ci right 1.908244e-03	k: 2870	n:1560000
Cons ci ratio: 1.059772e-02	ci left: 8.020526e-02	ci right 8.106040e-02	k: 125786	n:1560000
KS ci ratio: 1.132589e-01	ci left: 7.238423e-04	ci right 8.113616e-04	k: 1196	n:1560000
ZNF167   1560000 perm   1297 sec   (1203 perm/sec)   p_kst 7.666667e-04   p_cons 8.063205e-02   p_joint 1.839744e-03

Joint ci ratio: 7.493201e-02	ci left: 1.674910e-03	ci right 1.805920e-03	k: 2731	n:1570000
Cons ci ratio: 1.056461e-02	ci left: 8.019688e-02	ci right 8.104925e-02	k: 126577	n:1570000
KS ci ratio: 1.129292e-01	ci left: 7.235643e-04	ci right 8.107783e-04	k: 1203	n:1570000
ZNF167   1570000 perm   1311 sec   (1198 perm/sec)   p_kst 7.662420e-04   p_cons 8.062229e-02   p_joint 1.739490e-03

Joint ci ratio: 7.476811e-02	ci left: 1.671762e-03	ci right 1.802227e-03	k: 2743	n:1580000
Cons ci ratio: 1.052957e-02	ci left: 8.022019e-02	ci right 8.106996e-02	k: 127418	n:1580000
KS ci ratio: 1.126023e-01	ci left: 7.232902e-04	ci right 8.102021e-04	k: 1210	n:1580000
ZNF167   1580000 perm   1325 sec   (1192 perm/sec)   p_kst 7.658228e-04   p_cons 8.064430e-02   p_joint 1.736076e-03

Joint ci ratio: 7.449705e-02	ci left: 1.673592e-03	ci right 1.803706e-03	k: 2763	n:1590000
Cons ci ratio: 1.049665e-02	ci left: 8.021811e-02	ci right 8.106518e-02	k: 128219	n:1590000
KS ci ratio: 1.120026e-01	ci left: 7.266877e-04	ci right 8.135121e-04	k: 1223	n:1590000
ZNF167   1590000 perm   1340 sec   (1187 perm/sec)   p_kst 7.691824e-04   p_cons 8.064088e-02   p_joint 1.737736e-03

Joint ci ratio: 7.437626e-02	ci left: 1.668652e-03	ci right 1.798162e-03	k: 2772	n:1600000
Cons ci ratio: 1.046465e-02	ci left: 8.020733e-02	ci right 8.105169e-02	k: 129006	n:1600000
KS ci ratio: 1.118201e-01	ci left: 7.245759e-04	ci right 8.109976e-04	k: 1227	n:1600000
ZNF167   1600000 perm   1354 sec   (1181 perm/sec)   p_kst 7.668750e-04   p_cons 8.062875e-02   p_joint 1.732500e-03

Joint ci ratio: 6.547017e-02	ci left: 2.148987e-03	ci right 2.295049e-03	k: 3576	n:1610000
Cons ci ratio: 1.043255e-02	ci left: 8.020226e-02	ci right 8.104397e-02	k: 129802	n:1610000
KS ci ratio: 1.115933e-01	ci left: 7.230942e-04	ci right 8.091528e-04	k: 1232	n:1610000
ZNF167   1610000 perm   1369 sec   (1176 perm/sec)   p_kst 7.652174e-04   p_cons 8.062236e-02   p_joint 2.221118e-03

Joint ci ratio: 6.540651e-02	ci left: 2.139971e-03	ci right 2.285274e-03	k: 3583	n:1620000
Cons ci ratio: 1.040126e-02	ci left: 8.018987e-02	ci right 8.102891e-02	k: 130586	n:1620000
KS ci ratio: 1.111882e-01	ci left: 7.240315e-04	ci right 8.098682e-04	k: 1241	n:1620000
ZNF167   1620000 perm   1384 sec   (1170 perm/sec)   p_kst 7.660494e-04   p_cons 8.060864e-02   p_joint 2.211728e-03

Joint ci ratio: 7.833983e-02	ci left: 1.473646e-03	ci right 1.594394e-03	k: 2499	n:1630000
Cons ci ratio: 1.011579e-02	ci left: 8.392838e-02	ci right 8.478230e-02	k: 137498	n:1630000
KS ci ratio: 1.107432e-01	ci left: 7.255543e-04	ci right 8.112049e-04	k: 1251	n:1630000
ZNF167   1630000 perm   1399 sec   (1165 perm/sec)   p_kst 7.674847e-04   p_cons 8.435460e-02   p_joint 1.533129e-03

Joint ci ratio: 7.815257e-02	ci left: 1.471834e-03	ci right 1.592132e-03	k: 2511	n:1640000
Cons ci ratio: 1.008544e-02	ci left: 8.392144e-02	ci right 8.477271e-02	k: 138328	n:1640000
KS ci ratio: 1.103034e-01	ci left: 7.270592e-04	ci right 8.125245e-04	k: 1261	n:1640000
ZNF167   1640000 perm   1414 sec   (1160 perm/sec)   p_kst 7.689024e-04   p_cons 8.434634e-02   p_joint 1.531098e-03

Joint ci ratio: 7.796664e-02	ci left: 1.470045e-03	ci right 1.589898e-03	k: 2523	n:1650000
Cons ci ratio: 1.005532e-02	ci left: 8.391519e-02	ci right 8.476384e-02	k: 139159	n:1650000
KS ci ratio: 1.099988e-01	ci left: 7.267783e-04	ci right 8.119594e-04	k: 1268	n:1650000
ZNF167   1650000 perm   1429 sec   (1155 perm/sec)   p_kst 7.684848e-04   p_cons 8.433879e-02   p_joint 1.529091e-03

Joint ci ratio: 7.868843e-02	ci left: 1.434020e-03	ci right 1.552068e-03	k: 2477	n:1660000
Cons ci ratio: 1.002329e-02	ci left: 8.394268e-02	ci right 8.478889e-02	k: 140046	n:1660000
KS ci ratio: 1.096967e-01	ci left: 7.265012e-04	ci right 8.114007e-04	k: 1275	n:1660000
ZNF167   1660000 perm   1444 sec   (1150 perm/sec)   p_kst 7.680723e-04   p_cons 8.436506e-02   p_joint 1.492169e-03

Joint ci ratio: 7.837267e-02	ci left: 1.437174e-03	ci right 1.554985e-03	k: 2497	n:1670000
Cons ci ratio: 9.993062e-03	ci left: 8.394655e-02	ci right 8.479022e-02	k: 140894	n:1670000
KS ci ratio: 1.093971e-01	ci left: 7.262276e-04	ci right 8.108485e-04	k: 1282	n:1670000
ZNF167   1670000 perm   1459 sec   (1145 perm/sec)   p_kst 7.676647e-04   p_cons 8.436766e-02   p_joint 1.495210e-03

Joint ci ratio: 7.809175e-02	ci left: 1.439124e-03	ci right 1.556653e-03	k: 2515	n:1680000
Cons ci ratio: 9.963687e-03	ci left: 8.394146e-02	ci right 8.478259e-02	k: 141727	n:1680000
KS ci ratio: 1.089731e-01	ci left: 7.276947e-04	ci right 8.121368e-04	k: 1292	n:1680000
ZNF167   1680000 perm   1474 sec   (1140 perm/sec)   p_kst 7.690476e-04   p_cons 8.436131e-02   p_joint 1.497024e-03

Joint ci ratio: 7.776774e-02	ci left: 1.442792e-03	ci right 1.560110e-03	k: 2536	n:1690000
Cons ci ratio: 9.933389e-03	ci left: 8.395474e-02	ci right 8.479343e-02	k: 142591	n:1690000
KS ci ratio: 1.086376e-01	ci left: 7.279937e-04	ci right 8.121938e-04	k: 1300	n:1690000
ZNF167   1690000 perm   1489 sec   (1135 perm/sec)   p_kst 7.692308e-04   p_cons 8.437337e-02   p_joint 1.500592e-03

Joint ci ratio: 7.796840e-02	ci left: 1.426807e-03	ci right 1.543137e-03	k: 2523	n:1700000
Cons ci ratio: 9.904950e-03	ci left: 8.394321e-02	ci right 8.477938e-02	k: 143413	n:1700000
KS ci ratio: 1.083880e-01	ci left: 7.271450e-04	ci right 8.110414e-04	k: 1306	n:1700000
ZNF167   1700000 perm   1504 sec   (1130 perm/sec)   p_kst 7.682353e-04   p_cons 8.436059e-02   p_joint 1.484118e-03

Joint ci ratio: 7.769179e-02	ci left: 1.428784e-03	ci right 1.544844e-03	k: 2541	n:1710000
Cons ci ratio: 9.876006e-03	ci left: 8.394350e-02	ci right 8.477721e-02	k: 144255	n:1710000
KS ci ratio: 1.079346e-01	ci left: 7.291515e-04	ci right 8.129051e-04	k: 1317	n:1710000
ZNF167   1710000 perm   1519 sec   (1126 perm/sec)   p_kst 7.701754e-04   p_cons 8.435965e-02   p_joint 1.485965e-03

Joint ci ratio: 8.120706e-02	ci left: 1.297956e-03	ci right 1.408385e-03	k: 2326	n:1720000
Cons ci ratio: 9.846907e-03	ci left: 8.395016e-02	ci right 8.478147e-02	k: 145108	n:1720000
KS ci ratio: 1.077306e-01	ci left: 7.277408e-04	ci right 8.111643e-04	k: 1322	n:1720000
ZNF167   1720000 perm   1534 sec   (1121 perm/sec)   p_kst 7.686047e-04   p_cons 8.436512e-02   p_joint 1.352326e-03

Joint ci ratio: 8.105058e-02	ci left: 1.295550e-03	ci right 1.405552e-03	k: 2335	n:1730000
Cons ci ratio: 9.817549e-03	ci left: 8.396483e-02	ci right 8.479379e-02	k: 145975	n:1730000
KS ci ratio: 1.073660e-01	ci left: 7.285966e-04	ci right 8.118176e-04	k: 1331	n:1730000
ZNF167   1730000 perm   1549 sec   (1117 perm/sec)   p_kst 7.693642e-04   p_cons 8.437861e-02   p_joint 1.349711e-03

Joint ci ratio: 8.184409e-02	ci left: 1.262768e-03	ci right 1.371086e-03	k: 2290	n:1740000
Cons ci ratio: 9.789690e-03	ci left: 8.395983e-02	ci right 8.478638e-02	k: 146808	n:1740000
KS ci ratio: 1.070850e-01	ci left: 7.283243e-04	ci right 8.112829e-04	k: 1338	n:1740000
ZNF167   1740000 perm   1565 sec   (1112 perm/sec)   p_kst 7.689655e-04   p_cons 8.437241e-02   p_joint 1.316092e-03

Joint ci ratio: 8.154202e-02	ci left: 1.265068e-03	ci right 1.373164e-03	k: 2307	n:1750000
Cons ci ratio: 9.761850e-03	ci left: 8.395832e-02	ci right 8.478248e-02	k: 147647	n:1750000
KS ci ratio: 1.067665e-01	ci left: 7.286116e-04	ci right 8.113406e-04	k: 1346	n:1750000
ZNF167   1750000 perm   1580 sec   (1108 perm/sec)   p_kst 7.691429e-04   p_cons 8.436971e-02   p_joint 1.318286e-03

Joint ci ratio: 8.238659e-02	ci left: 1.231722e-03	ci right 1.338111e-03	k: 2260	n:1760000
Cons ci ratio: 9.733602e-03	ci left: 8.396703e-02	ci right 8.478888e-02	k: 148504	n:1760000
KS ci ratio: 1.064902e-01	ci left: 7.283430e-04	ci right 8.108140e-04	k: 1353	n:1760000
ZNF167   1760000 perm   1596 sec   (1103 perm/sec)   p_kst 7.687500e-04   p_cons 8.437727e-02   p_joint 1.284091e-03

Joint ci ratio: 8.242340e-02	ci left: 1.223657e-03	ci right 1.329398e-03	k: 2258	n:1770000
Cons ci ratio: 9.706698e-03	ci left: 8.395817e-02	ci right 8.477765e-02	k: 149330	n:1770000
KS ci ratio: 1.062550e-01	ci left: 7.275277e-04	ci right 8.097132e-04	k: 1359	n:1770000
ZNF167   1770000 perm   1611 sec   (1099 perm/sec)   p_kst 7.677966e-04   p_cons 8.436723e-02   p_joint 1.275706e-03

Joint ci ratio: 8.268062e-02	ci left: 1.209079e-03	ci right 1.313903e-03	k: 2244	n:1780000
Cons ci ratio: 9.680509e-03	ci left: 8.394157e-02	ci right 8.475866e-02	k: 150142	n:1780000
KS ci ratio: 1.061772e-01	ci left: 7.245341e-04	ci right 8.063177e-04	k: 1361	n:1780000
ZNF167   1780000 perm   1627 sec   (1094 perm/sec)   p_kst 7.646067e-04   p_cons 8.434944e-02   p_joint 1.260674e-03

Joint ci ratio: 8.249715e-02	ci left: 1.207795e-03	ci right 1.312265e-03	k: 2254	n:1790000
Cons ci ratio: 9.653902e-03	ci left: 8.393518e-02	ci right 8.474996e-02	k: 150972	n:1790000
KS ci ratio: 1.058667e-01	ci left: 7.248372e-04	ci right 8.064009e-04	k: 1369	n:1790000
ZNF167   1790000 perm   1642 sec   (1090 perm/sec)   p_kst 7.648045e-04   p_cons 8.434190e-02   p_joint 1.259218e-03

Joint ci ratio: 8.229671e-02	ci left: 1.207071e-03	ci right 1.311211e-03	k: 2265	n:1800000
Cons ci ratio: 9.627409e-03	ci left: 8.393054e-02	ci right 8.474302e-02	k: 151805	n:1800000
KS ci ratio: 1.053678e-01	ci left: 7.278419e-04	ci right 8.093337e-04	k: 1382	n:1800000
ZNF167   1800000 perm   1658 sec   (1085 perm/sec)   p_kst 7.677778e-04   p_cons 8.433611e-02   p_joint 1.258333e-03

Joint ci ratio: 8.268149e-02	ci left: 1.189038e-03	ci right 1.292126e-03	k: 2244	n:1810000
Cons ci ratio: 9.601854e-03	ci left: 8.391437e-02	ci right 8.472453e-02	k: 152617	n:1810000
KS ci ratio: 1.050644e-01	ci left: 7.281242e-04	ci right 8.093984e-04	k: 1390	n:1810000
ZNF167   1810000 perm   1674 sec   (1081 perm/sec)   p_kst 7.679558e-04   p_cons 8.431878e-02   p_joint 1.239779e-03

Joint ci ratio: 8.244312e-02	ci left: 1.189501e-03	ci right 1.292317e-03	k: 2257	n:1820000
Cons ci ratio: 9.575514e-03	ci left: 8.391428e-02	ci right 8.472221e-02	k: 153458	n:1820000
KS ci ratio: 1.048385e-01	ci left: 7.273337e-04	ci right 8.083344e-04	k: 1396	n:1820000
ZNF167   1820000 perm   1690 sec   (1077 perm/sec)   p_kst 7.670330e-04   p_cons 8.431758e-02   p_joint 1.240110e-03

Joint ci ratio: 8.277439e-02	ci left: 1.173367e-03	ci right 1.275216e-03	k: 2239	n:1830000
Cons ci ratio: 9.551384e-03	ci left: 8.388203e-02	ci right 8.468759e-02	k: 154240	n:1830000
KS ci ratio: 1.045396e-01	ci left: 7.276163e-04	ci right 8.084033e-04	k: 1404	n:1830000
ZNF167   1830000 perm   1707 sec   (1072 perm/sec)   p_kst 7.672131e-04   p_cons 8.428415e-02   p_joint 1.223497e-03

Joint ci ratio: 8.307224e-02	ci left: 1.158475e-03	ci right 1.259410e-03	k: 2223	n:1840000
Cons ci ratio: 9.525891e-03	ci left: 8.387507e-02	ci right 8.467841e-02	k: 155068	n:1840000
KS ci ratio: 1.042064e-01	ci left: 7.284255e-04	ci right 8.090287e-04	k: 1413	n:1840000
ZNF167   1840000 perm   1723 sec   (1068 perm/sec)   p_kst 7.679348e-04   p_cons 8.427609e-02   p_joint 1.208152e-03

Joint ci ratio: 8.281196e-02	ci left: 1.159623e-03	ci right 1.260327e-03	k: 2237	n:1850000
Cons ci ratio: 9.499637e-03	ci left: 8.388384e-02	ci right 8.468503e-02	k: 155925	n:1850000
KS ci ratio: 1.037669e-01	ci left: 7.308059e-04	ci right 8.113107e-04	k: 1425	n:1850000
ZNF167   1850000 perm   1739 sec   (1064 perm/sec)   p_kst 7.702703e-04   p_cons 8.428378e-02   p_joint 1.209189e-03

Joint ci ratio: 8.248080e-02	ci left: 1.162866e-03	ci right 1.263428e-03	k: 2255	n:1860000
Cons ci ratio: 9.473863e-03	ci left: 8.388822e-02	ci right 8.468727e-02	k: 156774	n:1860000
KS ci ratio: 1.032969e-01	ci left: 7.336852e-04	ci right 8.141189e-04	k: 1438	n:1860000
ZNF167   1860000 perm   1756 sec   (1059 perm/sec)   p_kst 7.731183e-04   p_cons 8.428710e-02   p_joint 1.212366e-03

Joint ci ratio: 8.224416e-02	ci left: 1.163456e-03	ci right 1.263767e-03	k: 2268	n:1870000
Cons ci ratio: 9.448887e-03	ci left: 8.388295e-02	ci right 8.467983e-02	k: 157605	n:1870000
KS ci ratio: 1.030110e-01	ci left: 7.339295e-04	ci right 8.141537e-04	k: 1446	n:1870000
ZNF167   1870000 perm   1772 sec   (1055 perm/sec)   p_kst 7.732620e-04   p_cons 8.428075e-02   p_joint 1.212834e-03

Joint ci ratio: 8.246304e-02	ci left: 1.151016e-03	ci right 1.250531e-03	k: 2256	n:1880000
Cons ci ratio: 9.425471e-03	ci left: 8.385545e-02	ci right 8.465009e-02	k: 158394	n:1880000
KS ci ratio: 1.026568e-01	ci left: 7.352079e-04	ci right 8.152790e-04	k: 1456	n:1880000
ZNF167   1880000 perm   1789 sec   (1051 perm/sec)   p_kst 7.744681e-04   p_cons 8.425213e-02   p_joint 1.200000e-03

Joint ci ratio: 8.244501e-02	ci left: 1.145444e-03	ci right 1.244454e-03	k: 2257	n:1890000
Cons ci ratio: 9.400584e-03	ci left: 8.385517e-02	ci right 8.464769e-02	k: 159234	n:1890000
KS ci ratio: 1.023761e-01	ci left: 7.354422e-04	ci right 8.153066e-04	k: 1464	n:1890000
ZNF167   1890000 perm   1805 sec   (1047 perm/sec)   p_kst 7.746032e-04   p_cons 8.425079e-02   p_joint 1.194180e-03

Joint ci ratio: 8.217246e-02	ci left: 1.147148e-03	ci right 1.245962e-03	k: 2272	n:1900000
Cons ci ratio: 9.376406e-03	ci left: 8.384649e-02	ci right 8.463688e-02	k: 160058	n:1900000
KS ci ratio: 1.019939e-01	ci left: 7.372130e-04	ci right 8.169529e-04	k: 1475	n:1900000
ZNF167   1900000 perm   1822 sec   (1043 perm/sec)   p_kst 7.763158e-04   p_cons 8.424105e-02   p_joint 1.195789e-03

Joint ci ratio: 8.197437e-02	ci left: 1.146783e-03	ci right 1.245316e-03	k: 2283	n:1910000
Cons ci ratio: 9.350826e-03	ci left: 8.386403e-02	ci right 8.465242e-02	k: 160932	n:1910000
KS ci ratio: 1.017186e-01	ci left: 7.374351e-04	ci right 8.169708e-04	k: 1483	n:1910000
ZNF167   1910000 perm   1839 sec   (1039 perm/sec)   p_kst 7.764398e-04   p_cons 8.425759e-02   p_joint 1.195288e-03

Joint ci ratio: 8.211874e-02	ci left: 1.136728e-03	ci right 1.234578e-03	k: 2275	n:1920000
Cons ci ratio: 9.326524e-03	ci left: 8.386371e-02	ci right 8.465004e-02	k: 161772	n:1920000
KS ci ratio: 1.015819e-01	ci left: 7.356246e-04	ci right 8.148520e-04	k: 1487	n:1920000
ZNF167   1920000 perm   1856 sec   (1035 perm/sec)   p_kst 7.744792e-04   p_cons 8.425625e-02   p_joint 1.184896e-03

Joint ci ratio: 8.195692e-02	ci left: 1.135406e-03	ci right 1.232940e-03	k: 2284	n:1930000
Cons ci ratio: 9.303785e-03	ci left: 8.384066e-02	ci right 8.462484e-02	k: 162568	n:1930000
KS ci ratio: 1.014457e-01	ci left: 7.338330e-04	ci right 8.127552e-04	k: 1491	n:1930000
ZNF167   1930000 perm   1873 sec   (1030 perm/sec)   p_kst 7.725389e-04   p_cons 8.423212e-02   p_joint 1.183420e-03

Joint ci ratio: 8.177821e-02	ci left: 1.134603e-03	ci right 1.231845e-03	k: 2294	n:1940000
Cons ci ratio: 9.278608e-03	ci left: 8.386105e-02	ci right 8.464329e-02	k: 163448	n:1940000
KS ci ratio: 1.012424e-01	ci left: 7.330647e-04	ci right 8.117369e-04	k: 1497	n:1940000
ZNF167   1940000 perm   1890 sec   (1026 perm/sec)   p_kst 7.716495e-04   p_cons 8.425155e-02   p_joint 1.182474e-03

Joint ci ratio: 8.192153e-02	ci left: 1.124765e-03	ci right 1.221341e-03	k: 2286	n:1950000
Cons ci ratio: 9.256586e-03	ci left: 8.383210e-02	ci right 8.461221e-02	k: 164232	n:1950000
KS ci ratio: 1.010403e-01	ci left: 7.323045e-04	ci right 8.107289e-04	k: 1503	n:1950000
ZNF167   1950000 perm   1908 sec   (1022 perm/sec)   p_kst 7.707692e-04   p_cons 8.422154e-02   p_joint 1.172308e-03

Joint ci ratio: 8.172524e-02	ci left: 1.124524e-03	ci right 1.220837e-03	k: 2297	n:1960000
Cons ci ratio: 9.234201e-03	ci left: 8.381211e-02	ci right 8.459014e-02	k: 165033	n:1960000
KS ci ratio: 1.008060e-01	ci left: 7.320495e-04	ci right 8.102540e-04	k: 1510	n:1960000
ZNF167   1960000 perm   1925 sec   (1018 perm/sec)   p_kst 7.704082e-04   p_cons 8.420051e-02   p_joint 1.171939e-03

Joint ci ratio: 8.161888e-02	ci left: 1.121799e-03	ci right 1.217748e-03	k: 2303	n:1970000
Cons ci ratio: 9.211402e-03	ci left: 8.380195e-02	ci right 8.457795e-02	k: 165853	n:1970000
KS ci ratio: 1.006065e-01	ci left: 7.313025e-04	ci right 8.092635e-04	k: 1516	n:1970000
ZNF167   1970000 perm   1942 sec   (1014 perm/sec)   p_kst 7.695431e-04   p_cons 8.418934e-02   p_joint 1.169036e-03

Joint ci ratio: 8.142475e-02	ci left: 1.121576e-03	ci right 1.217266e-03	k: 2314	n:1980000
Cons ci ratio: 9.186754e-03	ci left: 8.382566e-02	ci right 8.459979e-02	k: 166740	n:1980000
KS ci ratio: 1.004742e-01	ci left: 7.295784e-04	ci right 8.072473e-04	k: 1520	n:1980000
ZNF167   1980000 perm   1960 sec   (1010 perm/sec)   p_kst 7.676768e-04   p_cons 8.421212e-02   p_joint 1.168687e-03

Joint ci ratio: 8.167261e-02	ci left: 1.109048e-03	ci right 1.203971e-03	k: 2300	n:1990000
Cons ci ratio: 9.163736e-03	ci left: 8.382507e-02	ci right 8.459725e-02	k: 167579	n:1990000
KS ci ratio: 1.003424e-01	ci left: 7.278717e-04	ci right 8.052513e-04	k: 1524	n:1990000
ZNF167   1990000 perm   1978 sec   (1006 perm/sec)   p_kst 7.658291e-04   p_cons 8.421055e-02   p_joint 1.155779e-03

Joint ci ratio: 8.137246e-02	ci left: 1.111829e-03	ci right 1.206625e-03	k: 2317	n:2000000
Cons ci ratio: 9.141246e-03	ci left: 8.381850e-02	ci right 8.458871e-02	k: 168406	n:2000000
KS ci ratio: 1.000150e-01	ci left: 7.291071e-04	ci right 8.063503e-04	k: 1534	n:2000000
ZNF167   2000000 perm   1995 sec   (1003 perm/sec)   p_kst 7.670000e-04   p_cons 8.420300e-02   p_joint 1.158500e-03

Joint ci ratio: 8.133757e-02	ci left: 1.107273e-03	ci right 1.201637e-03	k: 2319	n:2010000
Cons ci ratio: 9.118185e-03	ci left: 8.382440e-02	ci right 8.459271e-02	k: 169258	n:2010000
KS ci ratio: 9.978772e-02	ci left: 7.288753e-04	ci right 8.059082e-04	k: 1541	n:2010000
ZNF167   2010000 perm   2012 sec   (999 perm/sec)   p_kst 7.666667e-04   p_cons 8.420796e-02   p_joint 1.153731e-03

Outputting figure to mutsig2_images.part000000000195/ZNF167.8_2309_2010000_0.00076667_0.084208_0.0011537.png
                gene_name: ZNF167
               theta_stop: 0.100 
                    nperm: 2010000 
                     p_ks: 0.00077 
        ci_ks_bounds_left: 0.00073 
       ci_ks_bounds_right: 0.00081 
                   p_cons: 0.084 
      ci_cons_bounds_left: 0.084 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.0012 
     ci_joint_bounds_left: 0.0011 
    ci_joint_bounds_right: 0.0012 

Current progress: 11 percent done.
ZNF19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.833363e-02	ci left: 5.012506e-01	ci right 5.209430e-01	k: 5111	n:10000
Cons ci ratio: 4.682149e-02	ci left: 4.023300e-01	ci right 4.217213e-01	k: 4120	n:10000
KS ci ratio: 4.615168e-02	ci left: 4.093044e-01	ci right 4.287428e-01	k: 4190	n:10000
ZNF19   10000 perm   2 sec   (5869 perm/sec)   p_kst 4.190000e-01   p_cons 4.120000e-01   p_joint 5.111000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF19.8_1393_10000_0.419_0.412_0.5111.png
                gene_name: ZNF19
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 12 percent done.
ZMYM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.032345e-02	ci left: 2.878562e-01	ci right 3.058623e-01	k: 2968	n:10000
Cons ci ratio: 1.299056e-02	ci left: 8.950816e-01	ci right 9.068836e-01	k: 9011	n:10000
KS ci ratio: 8.707717e-02	ci left: 1.611128e-01	ci right 1.758809e-01	k: 1684	n:10000
ZMYM3   10000 perm   2 sec   (4602 perm/sec)   p_kst 1.684000e-01   p_cons 9.011000e-01   p_joint 2.968000e-01

Outputting figure to mutsig2_images.part000000000195/ZMYM3.7_4227_10000_0.1684_0.9011_0.2968.png
                gene_name: ZMYM3
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.90 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 13 percent done.
ZNF107
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.158221e-02	ci left: 3.565488e-01	ci right 3.755293e-01	k: 3660	n:10000
Cons ci ratio: 7.954312e-02	ci left: 1.875697e-01	ci right 2.032082e-01	k: 1953	n:10000
KS ci ratio: 5.436136e-02	ci left: 3.326995e-01	ci right 3.513926e-01	k: 3420	n:10000
ZNF107   10000 perm   2 sec   (5552 perm/sec)   p_kst 3.420000e-01   p_cons 1.953000e-01   p_joint 3.660000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF107.7_2360_10000_0.342_0.1953_0.366.png
                gene_name: ZNF107
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 14 percent done.
ZNF117
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.290595e-02	ci left: 2.708188e-01	ci right 2.885097e-01	k: 2796	n:10000
Cons ci ratio: 5.161556e-02	ci left: 3.562506e-01	ci right 3.752277e-01	k: 3657	n:10000
KS ci ratio: 8.246634e-02	ci left: 1.766450e-01	ci right 1.919393e-01	k: 1842	n:10000
ZNF117   10000 perm   2 sec   (6216 perm/sec)   p_kst 1.842000e-01   p_cons 3.657000e-01   p_joint 2.796000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF117.7_1460_10000_0.1842_0.3657_0.2796.png
                gene_name: ZNF117
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 16 percent done.
ZNF121
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.123146e-02	ci left: 2.817130e-01	ci right 2.996091e-01	k: 2906	n:10000
Cons ci ratio: 4.428769e-02	ci left: 4.294418e-01	ci right 4.489936e-01	k: 4392	n:10000
KS ci ratio: 8.783046e-02	ci left: 1.587554e-01	ci right 1.734397e-01	k: 1660	n:10000
ZNF121   10000 perm   2 sec   (5897 perm/sec)   p_kst 1.660000e-01   p_cons 4.392000e-01   p_joint 2.906000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF121.7_1181_10000_0.166_0.4392_0.2906.png
                gene_name: ZNF121
               theta_stop: 0.088 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 17 percent done.
ZNF142
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.895237e-02	ci left: 6.375415e-01	ci right 6.563728e-01	k: 6470	n:10000
Cons ci ratio: 2.984537e-02	ci left: 6.234656e-01	ci right 6.424569e-01	k: 6330	n:10000
KS ci ratio: 3.710988e-02	ci left: 5.174580e-01	ci right 5.371261e-01	k: 5273	n:10000
ZNF142   10000 perm   2 sec   (4405 perm/sec)   p_kst 5.273000e-01   p_cons 6.330000e-01   p_joint 6.470000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF142.7_5092_10000_0.5273_0.633_0.647.png
                gene_name: ZNF142
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 18 percent done.
ZNF154
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.201626e-02	ci left: 7.517066e-01	ci right 7.685416e-01	k: 7602	n:10000
Cons ci ratio: 2.307825e-02	ci left: 7.339111e-01	ci right 7.511474e-01	k: 7426	n:10000
KS ci ratio: 3.046495e-02	ci left: 6.138185e-01	ci right 6.329096e-01	k: 6234	n:10000
ZNF154   10000 perm   2 sec   (5313 perm/sec)   p_kst 6.234000e-01   p_cons 7.426000e-01   p_joint 7.602000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF154.7_1326_10000_0.6234_0.7426_0.7602.png
                gene_name: ZNF154
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 20 percent done.
ZNF182
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.785097e-01	ci left: 4.188120e-02	ci right 5.018585e-02	k: 459	n:10000
Cons ci ratio: 3.751414e-01	ci left: 8.776964e-03	ci right 1.291541e-02	k: 107	n:10000
KS ci ratio: 2.684594e-02	ci left: 6.714609e-01	ci right 6.898338e-01	k: 6807	n:10000
ZNF182   10000 perm   2 sec   (6019 perm/sec)   p_kst 6.807000e-01   p_cons 1.070000e-02   p_joint 4.590000e-02

Joint ci ratio: 1.077657e-01	ci left: 5.869667e-02	ci right 6.543134e-02	k: 1240	n:20000
Cons ci ratio: 2.622204e-01	ci left: 9.600898e-03	ci right 1.254384e-02	k: 220	n:20000
KS ci ratio: 1.909065e-02	ci left: 6.717252e-01	ci right 6.847229e-01	k: 13565	n:20000
ZNF182   20000 perm   4 sec   (5332 perm/sec)   p_kst 6.782500e-01   p_cons 1.100000e-02   p_joint 6.200000e-02

Joint ci ratio: 8.851174e-02	ci left: 5.864411e-02	ci right 6.410788e-02	k: 1840	n:30000
Cons ci ratio: 2.104432e-01	ci left: 1.022953e-02	ci right 1.266646e-02	k: 342	n:30000
KS ci ratio: 1.556442e-02	ci left: 6.735828e-01	ci right 6.841825e-01	k: 20367	n:30000
ZNF182   30000 perm   6 sec   (5052 perm/sec)   p_kst 6.789000e-01   p_cons 1.140000e-02   p_joint 6.133333e-02

Joint ci ratio: 8.366497e-02	ci left: 4.984426e-02	ci right 5.422106e-02	k: 2080	n:40000
Cons ci ratio: 1.801367e-01	ci left: 1.064539e-02	ci right 1.277639e-02	k: 467	n:40000
KS ci ratio: 1.345917e-02	ci left: 6.749515e-01	ci right 6.841224e-01	k: 27182	n:40000
ZNF182   40000 perm   8 sec   (4826 perm/sec)   p_kst 6.795500e-01   p_cons 1.167500e-02   p_joint 5.200000e-02

Joint ci ratio: 8.866678e-02	ci left: 3.594951e-02	ci right 3.930445e-02	k: 1880	n:50000
Cons ci ratio: 1.604273e-01	ci left: 1.085271e-02	ci right 1.276460e-02	k: 589	n:50000
KS ci ratio: 1.200154e-02	ci left: 6.767738e-01	ci right 6.849652e-01	k: 34044	n:50000
ZNF182   50000 perm   11 sec   (4680 perm/sec)   p_kst 6.808800e-01   p_cons 1.178000e-02   p_joint 3.760000e-02

Joint ci ratio: 8.307187e-02	ci left: 3.429488e-02	ci right 3.728357e-02	k: 2146	n:60000
Cons ci ratio: 1.446008e-01	ci left: 1.122443e-02	ci right 1.298990e-02	k: 725	n:60000
KS ci ratio: 1.095496e-02	ci left: 6.771700e-01	ci right 6.846459e-01	k: 40855	n:60000
ZNF182   60000 perm   13 sec   (4566 perm/sec)   p_kst 6.809167e-01   p_cons 1.208333e-02   p_joint 3.576667e-02

Joint ci ratio: 7.811158e-02	ci left: 3.337039e-02	ci right 3.609692e-02	k: 2430	n:70000
Cons ci ratio: 1.337946e-01	ci left: 1.130320e-02	ci right 1.293762e-02	k: 847	n:70000
KS ci ratio: 1.013339e-02	ci left: 6.778335e-01	ci right 6.847515e-01	k: 47691	n:70000
ZNF182   70000 perm   16 sec   (4462 perm/sec)   p_kst 6.813000e-01   p_cons 1.210000e-02   p_joint 3.471429e-02

Joint ci ratio: 7.147340e-02	ci left: 3.494081e-02	ci right 3.754296e-02	k: 2898	n:80000
Cons ci ratio: 1.260881e-01	ci left: 1.118430e-02	ci right 1.270140e-02	k: 954	n:80000
KS ci ratio: 9.463927e-03	ci left: 6.787476e-01	ci right 6.852142e-01	k: 54559	n:80000
ZNF182   80000 perm   18 sec   (4369 perm/sec)   p_kst 6.819875e-01   p_cons 1.192500e-02   p_joint 3.622500e-02

Joint ci ratio: 6.535793e-02	ci left: 3.717579e-02	ci right 3.969851e-02	k: 3458	n:90000
Cons ci ratio: 1.258402e-01	ci left: 9.995015e-03	ci right 1.134791e-02	k: 959	n:90000
KS ci ratio: 8.919913e-03	ci left: 6.790686e-01	ci right 6.851641e-01	k: 61391	n:90000
ZNF182   90000 perm   21 sec   (4285 perm/sec)   p_kst 6.821222e-01   p_cons 1.065556e-02   p_joint 3.842222e-02

Joint ci ratio: 6.360752e-02	ci left: 3.542493e-02	ci right 3.776205e-02	k: 3658	n:100000
Cons ci ratio: 1.124317e-01	ci left: 1.133432e-02	ci right 1.269421e-02	k: 1200	n:100000
KS ci ratio: 8.444275e-03	ci left: 6.801459e-01	ci right 6.859235e-01	k: 68304	n:100000
ZNF182   100000 perm   24 sec   (4208 perm/sec)   p_kst 6.830400e-01   p_cons 1.200000e-02   p_joint 3.658000e-02

Joint ci ratio: 6.191100e-02	ci left: 3.407391e-02	ci right 3.625978e-02	k: 3867	n:110000
Cons ci ratio: 1.063913e-01	ci left: 1.154190e-02	ci right 1.284764e-02	k: 1340	n:110000
KS ci ratio: 8.053571e-03	ci left: 6.801589e-01	ci right 6.856678e-01	k: 75121	n:110000
ZNF182   110000 perm   27 sec   (4132 perm/sec)   p_kst 6.829182e-01   p_cons 1.218182e-02   p_joint 3.515455e-02

Joint ci ratio: 5.926537e-02	ci left: 3.413155e-02	ci right 3.622432e-02	k: 4220	n:120000
Cons ci ratio: 1.020354e-01	ci left: 1.152966e-02	ci right 1.277741e-02	k: 1457	n:120000
KS ci ratio: 7.697684e-03	ci left: 6.810102e-01	ci right 6.862809e-01	k: 82038	n:120000
ZNF182   120000 perm   30 sec   (4059 perm/sec)   p_kst 6.836500e-01   p_cons 1.214167e-02   p_joint 3.516667e-02

Joint ci ratio: 5.568858e-02	ci left: 3.569200e-02	ci right 3.774412e-02	k: 4772	n:130000
Cons ci ratio: 9.814264e-02	ci left: 1.152774e-02	ci right 1.272494e-02	k: 1575	n:130000
KS ci ratio: 7.404973e-03	ci left: 6.805706e-01	ci right 6.856366e-01	k: 88804	n:130000
ZNF182   130000 perm   33 sec   (3991 perm/sec)   p_kst 6.831077e-01   p_cons 1.211538e-02   p_joint 3.670769e-02

Outputting figure to mutsig2_images.part000000000195/ZNF182.7_1955_130000_0.68311_0.012115_0.036708.png
                gene_name: ZNF182
               theta_stop: 0.098 
                    nperm: 130000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.012 
      ci_cons_bounds_left: 0.012 
     ci_cons_bounds_right: 0.013 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.036 
    ci_joint_bounds_right: 0.038 

Current progress: 21 percent done.
ZNF132
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.738372e-02	ci left: 1.962376e-01	ci right 2.121351e-01	k: 2041	n:10000
Cons ci ratio: 2.822728e-02	ci left: 6.491105e-01	ci right 6.677971e-01	k: 6585	n:10000
KS ci ratio: 1.368725e-01	ci left: 7.058968e-02	ci right 8.105902e-02	k: 757	n:10000
ZNF132   10000 perm   2 sec   (5821 perm/sec)   p_kst 7.570000e-02   p_cons 6.585000e-01   p_joint 2.041000e-01

Joint ci ratio: 5.424393e-02	ci left: 2.014028e-01	ci right 2.126825e-01	k: 4140	n:20000
Cons ci ratio: 1.882874e-02	ci left: 6.777567e-01	ci right 6.906897e-01	k: 13685	n:20000
KS ci ratio: 9.812251e-02	ci left: 7.026263e-02	ci right 7.756183e-02	k: 1477	n:20000
ZNF132   20000 perm   4 sec   (5214 perm/sec)   p_kst 7.385000e-02   p_cons 6.842500e-01   p_joint 2.070000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF132.6_2133_20000_0.07385_0.68425_0.207.png
                gene_name: ZNF132
               theta_stop: 0.098 
                    nperm: 20000 
                     p_ks: 0.074 
        ci_ks_bounds_left: 0.070 
       ci_ks_bounds_right: 0.078 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 22 percent done.
ZNF211
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.404114e-01	ci left: 6.720239e-02	ci right 7.744844e-02	k: 722	n:10000
Cons ci ratio: 7.333963e-02	ci left: 2.139851e-01	ci right 2.303771e-01	k: 2221	n:10000
KS ci ratio: 1.019918e-01	ci left: 1.220977e-01	ci right 1.353194e-01	k: 1286	n:10000
ZNF211   10000 perm   2 sec   (5387 perm/sec)   p_kst 1.286000e-01   p_cons 2.221000e-01   p_joint 7.220000e-02

Joint ci ratio: 5.110605e-02	ci left: 2.214573e-01	ci right 2.331221e-01	k: 4545	n:20000
Cons ci ratio: 5.140613e-02	ci left: 2.194262e-01	ci right 2.310538e-01	k: 4504	n:20000
KS ci ratio: 7.123371e-02	ci left: 1.267960e-01	ci right 1.362115e-01	k: 2629	n:20000
ZNF211   20000 perm   4 sec   (4841 perm/sec)   p_kst 1.314500e-01   p_cons 2.252000e-01   p_joint 2.272500e-01

Outputting figure to mutsig2_images.part000000000195/ZNF211.6_1750_20000_0.13145_0.2252_0.22725.png
                gene_name: ZNF211
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 24 percent done.
ZNF217
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.573861e-02	ci left: 2.535997e-01	ci right 2.709390e-01	k: 2622	n:10000
Cons ci ratio: 9.659224e-02	ci left: 1.345280e-01	ci right 1.482816e-01	k: 1413	n:10000
KS ci ratio: 5.966541e-02	ci left: 2.924153e-01	ci right 3.105005e-01	k: 3014	n:10000
ZNF217   10000 perm   2 sec   (4851 perm/sec)   p_kst 3.014000e-01   p_cons 1.413000e-01   p_joint 2.622000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF217.6_3163_10000_0.3014_0.1413_0.2622.png
                gene_name: ZNF217
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.15 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 25 percent done.
ZNF221
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.064286e-02	ci left: 7.746878e-01	ci right 7.909471e-01	k: 7829	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ZNF221   10000 perm   2 sec   (5680 perm/sec)   p_kst 1   p_cons 7.829000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF221.6_1870_10000_1_0.7829_1.png
                gene_name: ZNF221
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 26 percent done.
ZNF23
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.519813e-02	ci left: 4.194707e-01	ci right 4.389705e-01	k: 4292	n:10000
Cons ci ratio: 7.492393e-02	ci left: 2.067847e-01	ci right 2.229817e-01	k: 2148	n:10000
KS ci ratio: 3.321714e-02	ci left: 5.722601e-01	ci right 5.916921e-01	k: 5820	n:10000
ZNF23   10000 perm   2 sec   (5593 perm/sec)   p_kst 5.820000e-01   p_cons 2.148000e-01   p_joint 4.292000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF23.6_1944_10000_0.582_0.2148_0.4292.png
                gene_name: ZNF23
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 28 percent done.
ZNF235
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.033941e-02	ci left: 4.757596e-01	ci right 4.954488e-01	k: 4856	n:10000
Cons ci ratio: 2.307221e-02	ci left: 7.340122e-01	ci right 7.512462e-01	k: 7427	n:10000
KS ci ratio: 5.920124e-02	ci left: 2.956866e-01	ci right 3.138273e-01	k: 3047	n:10000
ZNF235   10000 perm   2 sec   (5428 perm/sec)   p_kst 3.047000e-01   p_cons 7.427000e-01   p_joint 4.856000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF235.6_2233_10000_0.3047_0.7427_0.4856.png
                gene_name: ZNF235
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 29 percent done.
ZMYM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.375245e-02	ci left: 5.644382e-01	ci right 5.839185e-01	k: 5742	n:10000
KS ci ratio: 6.106854e-02	ci left: 2.828028e-01	ci right 3.007187e-01	k: 2917	n:10000
ZMYM2   10000 perm   2 sec   (4509 perm/sec)   p_kst 2.917000e-01   p_cons 5.742000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZMYM2.5_4226_10000_0.2917_0.5742_1.png
                gene_name: ZMYM2
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 30 percent done.
ZNF114
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.298773e-02	ci left: 7.354271e-01	ci right 7.526306e-01	k: 7441	n:10000
Cons ci ratio: 5.079150e-02	ci left: 3.637086e-01	ci right 3.827653e-01	k: 3732	n:10000
KS ci ratio: 2.730395e-02	ci left: 6.640082e-01	ci right 6.824908e-01	k: 6733	n:10000
ZNF114   10000 perm   2 sec   (5516 perm/sec)   p_kst 6.733000e-01   p_cons 3.732000e-01   p_joint 7.441000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF114.5_1266_10000_0.6733_0.3732_0.7441.png
                gene_name: ZNF114
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 32 percent done.
ZNF14
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.595726e-02	ci left: 5.331752e-01	ci right 5.527998e-01	k: 5430	n:10000
KS ci ratio: 7.031466e-02	ci left: 2.286929e-01	ci right 2.454605e-01	k: 2370	n:10000
ZNF14   10000 perm   2 sec   (5848 perm/sec)   p_kst 2.370000e-01   p_cons 5.430000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF14.5_1945_10000_0.237_0.543_1.png
                gene_name: ZNF14
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 33 percent done.
ZNF160
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.139518e-02	ci left: 2.806233e-01	ci right 2.984994e-01	k: 2895	n:10000
Cons ci ratio: 5.473782e-02	ci left: 3.296208e-01	ci right 3.482731e-01	k: 3389	n:10000
KS ci ratio: 7.277146e-02	ci left: 2.166492e-01	ci right 2.331114e-01	k: 2248	n:10000
ZNF160   10000 perm   2 sec   (4942 perm/sec)   p_kst 2.248000e-01   p_cons 3.389000e-01   p_joint 2.895000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF160.5_2473_10000_0.2248_0.3389_0.2895.png
                gene_name: ZNF160
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 34 percent done.
ZNF18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.055541e-02	ci left: 2.862707e-01	ci right 3.042488e-01	k: 2952	n:10000
Cons ci ratio: 6.712558e-02	ci left: 2.456887e-01	ci right 2.628547e-01	k: 2542	n:10000
KS ci ratio: 5.216508e-02	ci left: 3.513793e-01	ci right 3.703019e-01	k: 3608	n:10000
ZNF18   10000 perm   2 sec   (6230 perm/sec)   p_kst 3.608000e-01   p_cons 2.542000e-01   p_joint 2.952000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF18.5_1674_10000_0.3608_0.2542_0.2952.png
                gene_name: ZNF18
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.30 

Current progress: 36 percent done.
ZNF20
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.239677e-02	ci left: 4.509930e-01	ci right 4.706299e-01	k: 4608	n:10000
KS ci ratio: 1.158783e-02	ci left: 9.142005e-01	ci right 9.249535e-01	k: 9197	n:10000
ZNF20   10000 perm   2 sec   (6049 perm/sec)   p_kst 9.197000e-01   p_cons 4.608000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF20.4_1615_10000_0.9197_0.4608_1.png
                gene_name: ZNF20
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 37 percent done.
ZNF205
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.152098e-02	ci left: 7.600043e-01	ci right 7.766391e-01	k: 7684	n:10000
Cons ci ratio: 3.756639e-02	ci left: 5.113540e-01	ci right 5.310336e-01	k: 5212	n:10000
KS ci ratio: 2.989034e-02	ci left: 6.227620e-01	ci right 6.417609e-01	k: 6323	n:10000
ZNF205   10000 perm   2 sec   (5913 perm/sec)   p_kst 6.323000e-01   p_cons 5.212000e-01   p_joint 7.684000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF205.5_1689_10000_0.6323_0.5212_0.7684.png
                gene_name: ZNF205
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 38 percent done.
ZNF212
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.510024e-02	ci left: 7.001892e-01	ci right 7.180889e-01	k: 7092	n:10000
KS ci ratio: 1.970476e-02	ci left: 7.902989e-01	ci right 8.061270e-01	k: 7983	n:10000
ZNF212   10000 perm   2 sec   (5437 perm/sec)   p_kst 7.983000e-01   p_cons 7.092000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF212.5_1508_10000_0.7983_0.7092_1.png
                gene_name: ZNF212
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 39 percent done.
ZNF222
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.389164e-01	ci left: 1.096414e-02	ci right 1.552595e-02	k: 131	n:10000
Cons ci ratio: 1.548769e-01	ci left: 5.552036e-02	ci right 6.493785e-02	k: 601	n:10000
KS ci ratio: 2.152427e-01	ci left: 2.863733e-02	ci right 3.563870e-02	k: 320	n:10000
ZNF222   10000 perm   2 sec   (5734 perm/sec)   p_kst 3.200000e-02   p_cons 6.010000e-02   p_joint 1.310000e-02

Joint ci ratio: 1.779009e-01	ci left: 2.158850e-02	ci right 2.585152e-02	k: 473	n:20000
Cons ci ratio: 1.109958e-01	ci left: 5.543290e-02	ci right 6.199612e-02	k: 1173	n:20000
KS ci ratio: 1.500435e-01	ci left: 3.051917e-02	ci right 3.551780e-02	k: 659	n:20000
ZNF222   20000 perm   4 sec   (5156 perm/sec)   p_kst 3.295000e-02   p_cons 5.865000e-02   p_joint 2.365000e-02

Joint ci ratio: 1.801717e-01	ci left: 1.413255e-02	ci right 1.696240e-02	k: 465	n:30000
Cons ci ratio: 9.090286e-02	ci left: 5.570741e-02	ci right 6.104519e-02	k: 1750	n:30000
KS ci ratio: 1.232858e-01	ci left: 3.058681e-02	ci right 3.463770e-02	k: 977	n:30000
ZNF222   30000 perm   6 sec   (4914 perm/sec)   p_kst 3.256667e-02   p_cons 5.833333e-02   p_joint 1.550000e-02

Joint ci ratio: 1.155326e-01	ci left: 2.635654e-02	ci right 2.961247e-02	k: 1118	n:40000
Cons ci ratio: 7.754382e-02	ci left: 5.771672e-02	ci right 6.239740e-02	k: 2401	n:40000
KS ci ratio: 1.053167e-01	ci left: 3.170934e-02	ci right 3.525880e-02	k: 1338	n:40000
ZNF222   40000 perm   8 sec   (4741 perm/sec)   p_kst 3.345000e-02   p_cons 6.002500e-02   p_joint 2.795000e-02

Joint ci ratio: 8.931012e-02	ci left: 3.544066e-02	ci right 3.877336e-02	k: 1854	n:50000
Cons ci ratio: 6.898545e-02	ci left: 5.856357e-02	ci right 6.276762e-02	k: 3032	n:50000
KS ci ratio: 9.361401e-02	ci left: 3.229175e-02	ci right 3.548266e-02	k: 1693	n:50000
ZNF222   50000 perm   11 sec   (4623 perm/sec)   p_kst 3.386000e-02   p_cons 6.064000e-02   p_joint 3.708000e-02

Outputting figure to mutsig2_images.part000000000195/ZNF222.5_1511_50000_0.03386_0.06064_0.03708.png
                gene_name: ZNF222
               theta_stop: 0.094 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.032 
       ci_ks_bounds_right: 0.035 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.037 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.039 

Current progress: 41 percent done.
ZMYM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.589673e-02	ci left: 4.119951e-01	ci right 4.314506e-01	k: 4217	n:10000
Cons ci ratio: 1.842942e-02	ci left: 8.113112e-01	ci right 8.265025e-01	k: 8190	n:10000
KS ci ratio: 6.825929e-02	ci left: 2.394614e-01	ci right 2.564857e-01	k: 2479	n:10000
ZMYM1   10000 perm   2 sec   (5318 perm/sec)   p_kst 2.479000e-01   p_cons 8.190000e-01   p_joint 4.217000e-01

Outputting figure to mutsig2_images.part000000000195/ZMYM1.4_3465_10000_0.2479_0.819_0.4217.png
                gene_name: ZMYM1
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 42 percent done.
ZNF10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.916000e-02	ci left: 3.790301e-01	ci right 3.982348e-01	k: 3886	n:10000
Cons ci ratio: 2.874356e-02	ci left: 6.408607e-01	ci right 6.596517e-01	k: 6503	n:10000
KS ci ratio: 7.721745e-02	ci left: 1.969273e-01	ci right 2.128450e-01	k: 2048	n:10000
ZNF10   10000 perm   2 sec   (6028 perm/sec)   p_kst 2.048000e-01   p_cons 6.503000e-01   p_joint 3.886000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF10.4_1738_10000_0.2048_0.6503_0.3886.png
                gene_name: ZNF10
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 43 percent done.
ZNF101
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.476731e-02	ci left: 4.241566e-01	ci right 4.436819e-01	k: 4339	n:10000
Cons ci ratio: 5.098745e-02	ci left: 3.619185e-01	ci right 3.809565e-01	k: 3714	n:10000
KS ci ratio: 4.789100e-02	ci left: 3.914738e-01	ci right 4.107839e-01	k: 4011	n:10000
ZNF101   10000 perm   2 sec   (6200 perm/sec)   p_kst 4.011000e-01   p_cons 3.714000e-01   p_joint 4.339000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF101.4_1327_10000_0.4011_0.3714_0.4339.png
                gene_name: ZNF101
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 45 percent done.
ZNF133
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.491220e-02	ci left: 5.477998e-01	ci right 5.673666e-01	k: 5576	n:10000
Cons ci ratio: 2.843462e-02	ci left: 6.457901e-01	ci right 6.645195e-01	k: 6552	n:10000
KS ci ratio: 5.068314e-02	ci left: 3.647032e-01	ci right 3.837701e-01	k: 3742	n:10000
ZNF133   10000 perm   2 sec   (5578 perm/sec)   p_kst 3.742000e-01   p_cons 6.552000e-01   p_joint 5.576000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF133.4_1974_10000_0.3742_0.6552_0.5576.png
                gene_name: ZNF133
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 46 percent done.
ZNF135
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.921764e-02	ci left: 4.898515e-01	ci right 5.095487e-01	k: 4997	n:10000
Cons ci ratio: 1.939847e-02	ci left: 7.953712e-01	ci right 8.110517e-01	k: 8033	n:10000
KS ci ratio: 5.450658e-02	ci left: 3.315077e-01	ci right 3.501851e-01	k: 3408	n:10000
ZNF135   10000 perm   2 sec   (5516 perm/sec)   p_kst 3.408000e-01   p_cons 8.033000e-01   p_joint 4.997000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF135.4_2182_10000_0.3408_0.8033_0.4997.png
                gene_name: ZNF135
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 47 percent done.
ZNF141
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.070530e-01	ci left: 3.100901e-02	ci right 3.826537e-02	k: 345	n:10000
Cons ci ratio: 1.019918e-01	ci left: 1.220977e-01	ci right 1.353194e-01	k: 1286	n:10000
KS ci ratio: 1.697915e-01	ci left: 4.628962e-02	ci right 5.497454e-02	k: 505	n:10000
ZNF141   10000 perm   2 sec   (5817 perm/sec)   p_kst 5.050000e-02   p_cons 1.286000e-01   p_joint 3.450000e-02

Joint ci ratio: 1.227707e-01	ci left: 4.551508e-02	ci right 5.151706e-02	k: 969	n:20000
Cons ci ratio: 7.263950e-02	ci left: 1.224640e-01	ci right 1.317447e-01	k: 2541	n:20000
KS ci ratio: 1.243277e-01	ci left: 4.439900e-02	ci right 5.033349e-02	k: 946	n:20000
ZNF141   20000 perm   4 sec   (5203 perm/sec)   p_kst 4.730000e-02   p_cons 1.270500e-01   p_joint 4.845000e-02

Joint ci ratio: 8.440947e-02	ci left: 6.422883e-02	ci right 6.992203e-02	k: 2011	n:30000
Cons ci ratio: 5.727139e-02	ci left: 1.311848e-01	ci right 1.389526e-01	k: 4051	n:30000
KS ci ratio: 9.999010e-02	ci left: 4.629151e-02	ci right 5.119636e-02	k: 1461	n:30000
ZNF141   30000 perm   6 sec   (4952 perm/sec)   p_kst 4.870000e-02   p_cons 1.350333e-01   p_joint 6.703333e-02

Outputting figure to mutsig2_images.part000000000195/ZNF141.4_1441_30000_0.0487_0.13503_0.067033.png
                gene_name: ZNF141
               theta_stop: 0.100 
                    nperm: 30000 
                     p_ks: 0.049 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.051 
                   p_cons: 0.14 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.067 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.070 

Current progress: 49 percent done.
ZNF143
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.351292e-02	ci left: 7.266365e-01	ci right 7.440262e-01	k: 7354	n:10000
Cons ci ratio: 4.477642e-02	ci left: 4.240569e-01	ci right 4.435817e-01	k: 4338	n:10000
KS ci ratio: 3.064035e-02	ci left: 6.111060e-01	ci right 6.302237e-01	k: 6207	n:10000
ZNF143   10000 perm   2 sec   (5853 perm/sec)   p_kst 6.207000e-01   p_cons 4.338000e-01   p_joint 7.354000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF143.4_1977_10000_0.6207_0.4338_0.7354.png
                gene_name: ZNF143
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 50 percent done.
ZNF16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.409992e-03	ci left: 9.785573e-01	ci right 9.839571e-01	k: 9814	n:10000
Cons ci ratio: 2.426881e-02	ci left: 7.140138e-01	ci right 7.316562e-01	k: 7229	n:10000
KS ci ratio: 1.745238e-02	ci left: 8.271707e-01	ci right 8.418339e-01	k: 8346	n:10000
ZNF16   10000 perm   2 sec   (5868 perm/sec)   p_kst 8.346000e-01   p_cons 7.229000e-01   p_joint 9.814000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF16.4_2057_10000_0.8346_0.7229_0.9814.png
                gene_name: ZNF16
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 51 percent done.
ZNF175
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.660958e-02	ci left: 4.045217e-01	ci right 4.239283e-01	k: 4142	n:10000
Cons ci ratio: 7.982246e-02	ci left: 1.864866e-01	ci right 2.020919e-01	k: 1942	n:10000
KS ci ratio: 4.086781e-02	ci left: 4.692660e-01	ci right 4.889461e-01	k: 4791	n:10000
ZNF175   10000 perm   2 sec   (5810 perm/sec)   p_kst 4.791000e-01   p_cons 1.942000e-01   p_joint 4.142000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF175.4_2152_10000_0.4791_0.1942_0.4142.png
                gene_name: ZNF175
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 53 percent done.
ZNF197
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.297882e-02	ci left: 5.757708e-01	ci right 5.951794e-01	k: 5855	n:10000
KS ci ratio: 1.505507e-02	ci left: 8.647828e-01	ci right 8.780001e-01	k: 8715	n:10000
ZNF197   10000 perm   2 sec   (5438 perm/sec)   p_kst 8.715000e-01   p_cons 5.855000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF197.4_3149_10000_0.8715_0.5855_1.png
                gene_name: ZNF197
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 54 percent done.
ZNF2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.637888e-02	ci left: 8.442763e-01	ci right 8.583184e-01	k: 8514	n:10000
Cons ci ratio: 3.132751e-02	ci left: 6.005602e-01	ci right 6.197756e-01	k: 6102	n:10000
KS ci ratio: 1.814299e-02	ci left: 8.159855e-01	ci right 8.310256e-01	k: 8236	n:10000
ZNF2   10000 perm   2 sec   (5845 perm/sec)   p_kst 8.236000e-01   p_cons 6.102000e-01   p_joint 8.514000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF2.4_1297_10000_0.8236_0.6102_0.8514.png
                gene_name: ZNF2
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 55 percent done.
ZNF202
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.115553e-01	ci left: 1.037366e-01	ci right 1.160916e-01	k: 1098	n:10000
Cons ci ratio: 1.143038e-02	ci left: 9.162609e-01	ci right 9.268919e-01	k: 9217	n:10000
KS ci ratio: 2.206259e-01	ci left: 2.721699e-02	ci right 3.406005e-02	k: 305	n:10000
ZNF202   10000 perm   2 sec   (5605 perm/sec)   p_kst 3.050000e-02   p_cons 9.217000e-01   p_joint 1.098000e-01

Joint ci ratio: 9.833821e-02	ci left: 6.996946e-02	ci right 7.725509e-02	k: 1471	n:20000
Cons ci ratio: 7.806134e-03	ci left: 9.228472e-01	ci right 9.301283e-01	k: 18531	n:20000
KS ci ratio: 1.578823e-01	ci left: 2.753511e-02	ci right 3.230286e-02	k: 597	n:20000
ZNF202   20000 perm   4 sec   (5053 perm/sec)   p_kst 2.985000e-02   p_cons 9.265500e-01   p_joint 7.355000e-02

Joint ci ratio: 8.070842e-02	ci left: 6.995027e-02	ci right 7.586609e-02	k: 2186	n:30000
Cons ci ratio: 6.395770e-03	ci left: 9.230476e-01	ci right 9.290029e-01	k: 27782	n:30000
KS ci ratio: 1.312683e-01	ci left: 2.696883e-02	ci right 3.078980e-02	k: 865	n:30000
ZNF202   30000 perm   6 sec   (4804 perm/sec)   p_kst 2.883333e-02   p_cons 9.260667e-01   p_joint 7.286667e-02

Joint ci ratio: 6.143668e-02	ci left: 8.952993e-02	ci right 9.522941e-02	k: 3694	n:40000
Cons ci ratio: 5.559545e-03	ci left: 9.229340e-01	ci right 9.281040e-01	k: 37022	n:40000
KS ci ratio: 1.122226e-01	ci left: 2.793652e-02	ci right 3.128224e-02	k: 1183	n:40000
ZNF202   40000 perm   9 sec   (4661 perm/sec)   p_kst 2.957500e-02   p_cons 9.255500e-01   p_joint 9.235000e-02

Joint ci ratio: 5.780018e-02	ci left: 8.179993e-02	ci right 8.668847e-02	k: 4211	n:50000
Cons ci ratio: 4.972131e-03	ci left: 9.232245e-01	ci right 9.278460e-01	k: 46278	n:50000
KS ci ratio: 1.004802e-01	ci left: 2.805377e-02	ci right 3.104118e-02	k: 1476	n:50000
ZNF202   50000 perm   11 sec   (4543 perm/sec)   p_kst 2.952000e-02   p_cons 9.255600e-01   p_joint 8.422000e-02

Joint ci ratio: 5.403134e-02	ci left: 7.846674e-02	ci right 8.284059e-02	k: 4838	n:60000
Cons ci ratio: 4.517732e-03	ci left: 9.240790e-01	ci right 9.282796e-01	k: 55572	n:60000
KS ci ratio: 9.195038e-02	ci left: 2.804652e-02	ci right 3.076592e-02	k: 1763	n:60000
ZNF202   60000 perm   14 sec   (4441 perm/sec)   p_kst 2.938333e-02   p_cons 9.262000e-01   p_joint 8.063333e-02

Outputting figure to mutsig2_images.part000000000195/ZNF202.4_1971_60000_0.029383_0.9262_0.080633.png
                gene_name: ZNF202
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.081 
     ci_joint_bounds_left: 0.078 
    ci_joint_bounds_right: 0.083 

Current progress: 57 percent done.
ZNF226
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.117017e-02	ci left: 7.658760e-01	ci right 7.823640e-01	k: 7742	n:10000
Cons ci ratio: 4.555967e-02	ci left: 4.155831e-01	ci right 4.350604e-01	k: 4253	n:10000
KS ci ratio: 5.836740e-03	ci left: 9.753575e-01	ci right 9.811593e-01	k: 9784	n:10000
ZNF226   10000 perm   2 sec   (5348 perm/sec)   p_kst 9.784000e-01   p_cons 4.253000e-01   p_joint 7.742000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF226.4_2482_10000_0.9784_0.4253_0.7742.png
                gene_name: ZNF226
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 58 percent done.
ZNF227
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.464415e-02	ci left: 5.516076e-01	ci right 5.711566e-01	k: 5614	n:10000
Cons ci ratio: 6.744565e-02	ci left: 2.439092e-01	ci right 2.610352e-01	k: 2524	n:10000
KS ci ratio: 1.282242e-02	ci left: 8.974420e-01	ci right 9.091219e-01	k: 9034	n:10000
ZNF227   10000 perm   2 sec   (5972 perm/sec)   p_kst 9.034000e-01   p_cons 2.524000e-01   p_joint 5.614000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF227.4_2416_10000_0.9034_0.2524_0.5614.png
                gene_name: ZNF227
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 59 percent done.
ZMYND11
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.974606e-02	ci left: 1.867820e-01	ci right 2.023963e-01	k: 1945	n:10000
Cons ci ratio: 1.037572e-01	ci left: 1.183824e-01	ci right 1.314370e-01	k: 1248	n:10000
KS ci ratio: 6.647702e-02	ci left: 2.493471e-01	ci right 2.665941e-01	k: 2579	n:10000
ZMYND11   10000 perm   2 sec   (5977 perm/sec)   p_kst 2.579000e-01   p_cons 1.248000e-01   p_joint 1.945000e-01

Joint ci ratio: 6.055015e-02	ci left: 1.679782e-01	ci right 1.785169e-01	k: 3464	n:20000
Cons ci ratio: 7.374025e-02	ci left: 1.192162e-01	ci right 1.283935e-01	k: 2475	n:20000
KS ci ratio: 4.734051e-02	ci left: 2.492184e-01	ci right 2.613529e-01	k: 5105	n:20000
ZMYND11   20000 perm   4 sec   (5311 perm/sec)   p_kst 2.552500e-01   p_cons 1.237500e-01   p_joint 1.732000e-01

Outputting figure to mutsig2_images.part000000000195/ZMYND11.3_1886_20000_0.25525_0.12375_0.1732.png
                gene_name: ZMYND11
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 61 percent done.
ZMYND15
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.699424e-02	ci left: 6.690435e-01	ci right 6.874525e-01	k: 6783	n:10000
Cons ci ratio: 4.488595e-02	ci left: 4.228604e-01	ci right 4.423788e-01	k: 4326	n:10000
KS ci ratio: 2.732877e-02	ci left: 6.636054e-01	ci right 6.820938e-01	k: 6729	n:10000
ZMYND15   10000 perm   2 sec   (5764 perm/sec)   p_kst 6.729000e-01   p_cons 4.326000e-01   p_joint 6.783000e-01

Outputting figure to mutsig2_images.part000000000195/ZMYND15.3_2281_10000_0.6729_0.4326_0.6783.png
                gene_name: ZMYND15
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 62 percent done.
ZMYND17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.296871e-02	ci left: 8.953894e-01	ci right 9.071756e-01	k: 9014	n:10000
Cons ci ratio: 4.730797e-02	ci left: 3.973494e-01	ci right 4.167048e-01	k: 4070	n:10000
KS ci ratio: 2.693860e-02	ci left: 6.699500e-01	ci right 6.883455e-01	k: 6792	n:10000
ZMYND17   10000 perm   2 sec   (6188 perm/sec)   p_kst 6.792000e-01   p_cons 4.070000e-01   p_joint 9.014000e-01

Outputting figure to mutsig2_images.part000000000195/ZMYND17.3_1407_10000_0.6792_0.407_0.9014.png
                gene_name: ZMYND17
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 63 percent done.
ZNF100
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.215091e-02	ci left: 2.196098e-01	ci right 2.361490e-01	k: 2278	n:10000
Cons ci ratio: 1.899873e-02	ci left: 8.019682e-01	ci right 8.174510e-01	k: 8098	n:10000
KS ci ratio: 1.254102e-01	ci left: 8.339227e-02	ci right 9.464849e-02	k: 889	n:10000
ZNF100   10000 perm   2 sec   (6094 perm/sec)   p_kst 8.890000e-02   p_cons 8.098000e-01   p_joint 2.278000e-01

Joint ci ratio: 5.327199e-02	ci left: 2.073428e-01	ci right 2.187408e-01	k: 4260	n:20000
Cons ci ratio: 1.342725e-02	ci left: 8.044426e-01	ci right 8.153671e-01	k: 16199	n:20000
KS ci ratio: 8.903753e-02	ci left: 8.440281e-02	ci right 9.231734e-02	k: 1766	n:20000
ZNF100   20000 perm   4 sec   (5405 perm/sec)   p_kst 8.830000e-02   p_cons 8.099500e-01   p_joint 2.130000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF100.3_1649_20000_0.0883_0.80995_0.213.png
                gene_name: ZNF100
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 64 percent done.
ZNF134
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.614730e-02	ci left: 3.184024e-01	ci right 3.368981e-01	k: 3276	n:10000
Cons ci ratio: 4.745527e-02	ci left: 3.958555e-01	ci right 4.151996e-01	k: 4055	n:10000
KS ci ratio: 6.198219e-02	ci left: 2.767603e-01	ci right 2.945647e-01	k: 2856	n:10000
ZNF134   10000 perm   2 sec   (6106 perm/sec)   p_kst 2.856000e-01   p_cons 4.055000e-01   p_joint 3.276000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF134.3_1292_10000_0.2856_0.4055_0.3276.png
                gene_name: ZNF134
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 66 percent done.
ZNF140
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.351292e-02	ci left: 7.266365e-01	ci right 7.440262e-01	k: 7354	n:10000
Cons ci ratio: 5.698598e-02	ci left: 3.119521e-01	ci right 3.303522e-01	k: 3211	n:10000
KS ci ratio: 1.179038e-02	ci left: 9.115235e-01	ci right 9.224322e-01	k: 9171	n:10000
ZNF140   10000 perm   2 sec   (5697 perm/sec)   p_kst 9.171000e-01   p_cons 3.211000e-01   p_joint 7.354000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF140.3_1390_10000_0.9171_0.3211_0.7354.png
                gene_name: ZNF140
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.74 

Current progress: 67 percent done.
ZNF148
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.143635e-02	ci left: 7.614214e-01	ci right 7.780212e-01	k: 7698	n:10000
Cons ci ratio: 6.408154e-02	ci left: 2.634937e-01	ci right 2.810391e-01	k: 2722	n:10000
KS ci ratio: 2.392992e-02	ci left: 7.196677e-01	ci right 7.371991e-01	k: 7285	n:10000
ZNF148   10000 perm   2 sec   (5755 perm/sec)   p_kst 7.285000e-01   p_cons 2.722000e-01   p_joint 7.698000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF148.3_2409_10000_0.7285_0.2722_0.7698.png
                gene_name: ZNF148
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 68 percent done.
ZNF169
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.143295e-02	ci left: 5.989536e-01	ci right 6.181831e-01	k: 6086	n:10000
Cons ci ratio: 4.670574e-02	ci left: 4.035254e-01	ci right 4.229252e-01	k: 4132	n:10000
KS ci ratio: 1.842942e-02	ci left: 8.113112e-01	ci right 8.265025e-01	k: 8190	n:10000
ZNF169   10000 perm   2 sec   (5987 perm/sec)   p_kst 8.190000e-01   p_cons 4.132000e-01   p_joint 6.086000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF169.3_1828_10000_0.819_0.4132_0.6086.png
                gene_name: ZNF169
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 70 percent done.
ZNF17
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.986532e-02	ci left: 1.267935e-01	ci right 1.402208e-01	k: 1334	n:10000
Cons ci ratio: 2.473563e-02	ci left: 7.062425e-01	ci right 7.240320e-01	k: 7152	n:10000
KS ci ratio: 2.362105e-01	ci left: 2.362888e-02	ci right 3.005075e-02	k: 267	n:10000
ZNF17   10000 perm   2 sec   (5868 perm/sec)   p_kst 2.670000e-02   p_cons 7.152000e-01   p_joint 1.334000e-01

Joint ci ratio: 9.790809e-02	ci left: 7.055582e-02	ci right 7.786855e-02	k: 1483	n:20000
Cons ci ratio: 1.748254e-02	ci left: 7.090905e-01	ci right 7.216469e-01	k: 14308	n:20000
KS ci ratio: 1.676740e-01	ci left: 2.436600e-02	ci right 2.887305e-02	k: 531	n:20000
ZNF17   20000 perm   4 sec   (5255 perm/sec)   p_kst 2.655000e-02   p_cons 7.154000e-01   p_joint 7.415000e-02

Joint ci ratio: 6.269075e-02	ci left: 1.116737e-01	ci right 1.189343e-01	k: 3458	n:30000
Cons ci ratio: 1.414843e-02	ci left: 7.138760e-01	ci right 7.240816e-01	k: 21570	n:30000
KS ci ratio: 1.361198e-01	ci left: 2.506623e-02	ci right 2.875949e-02	k: 806	n:30000
ZNF17   30000 perm   6 sec   (5002 perm/sec)   p_kst 2.686667e-02   p_cons 7.190000e-01   p_joint 1.152667e-01

Joint ci ratio: 5.233587e-02	ci left: 1.197716e-01	ci right 1.262332e-01	k: 4919	n:40000
Cons ci ratio: 1.220747e-02	ci left: 7.160739e-01	ci right 7.248941e-01	k: 28820	n:40000
KS ci ratio: 1.185076e-01	ci left: 2.504504e-02	ci right 2.822419e-02	k: 1064	n:40000
ZNF17   40000 perm   8 sec   (4842 perm/sec)   p_kst 2.660000e-02   p_cons 7.205000e-01   p_joint 1.229750e-01

Joint ci ratio: 6.419470e-02	ci left: 6.716781e-02	ci right 7.164234e-02	k: 3469	n:50000
Cons ci ratio: 1.093281e-02	ci left: 7.160216e-01	ci right 7.239128e-01	k: 35999	n:50000
KS ci ratio: 1.062532e-01	ci left: 2.509022e-02	ci right 2.792512e-02	k: 1324	n:50000
ZNF17   50000 perm   11 sec   (4709 perm/sec)   p_kst 2.648000e-02   p_cons 7.199800e-01   p_joint 6.938000e-02

Joint ci ratio: 5.905236e-02	ci left: 6.639274e-02	ci right 7.044912e-02	k: 4104	n:60000
Cons ci ratio: 9.988014e-03	ci left: 7.160538e-01	ci right 7.232583e-01	k: 43180	n:60000
KS ci ratio: 9.811050e-02	ci left: 2.464370e-02	ci right 2.720243e-02	k: 1554	n:60000
ZNF17   60000 perm   13 sec   (4601 perm/sec)   p_kst 2.590000e-02   p_cons 7.196667e-01   p_joint 6.840000e-02

Outputting figure to mutsig2_images.part000000000195/ZNF17.3_2001_60000_0.0259_0.71967_0.0684.png
                gene_name: ZNF17
               theta_stop: 0.098 
                    nperm: 60000 
                     p_ks: 0.026 
        ci_ks_bounds_left: 0.025 
       ci_ks_bounds_right: 0.027 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.068 
     ci_joint_bounds_left: 0.066 
    ci_joint_bounds_right: 0.070 

Current progress: 71 percent done.
ZNF185
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.566438e-02	ci left: 2.035310e-01	ci right 2.196374e-01	k: 2115	n:10000
Cons ci ratio: 3.086197e-02	ci left: 6.076906e-01	ci right 6.268410e-01	k: 6173	n:10000
KS ci ratio: 1.793285e-01	ci left: 4.149837e-02	ci right 4.976893e-02	k: 455	n:10000
ZNF185   10000 perm   2 sec   (5384 perm/sec)   p_kst 4.550000e-02   p_cons 6.173000e-01   p_joint 2.115000e-01

Joint ci ratio: 5.565396e-02	ci left: 1.931890e-01	ci right 2.042987e-01	k: 3974	n:20000
Cons ci ratio: 2.170389e-02	ci left: 6.131306e-01	ci right 6.266345e-01	k: 12398	n:20000
KS ci ratio: 1.225717e-01	ci left: 4.566069e-02	ci right 5.167140e-02	k: 972	n:20000
ZNF185   20000 perm   4 sec   (4974 perm/sec)   p_kst 4.860000e-02   p_cons 6.199000e-01   p_joint 1.987000e-01

Joint ci ratio: 5.442357e-02	ci left: 1.434061e-01	ci right 1.514623e-01	k: 4422	n:30000
Cons ci ratio: 1.762257e-02	ci left: 6.170196e-01	ci right 6.280233e-01	k: 18676	n:30000
KS ci ratio: 1.014203e-01	ci left: 4.502272e-02	ci right 4.986541e-02	k: 1422	n:30000
ZNF185   30000 perm   6 sec   (4802 perm/sec)   p_kst 4.740000e-02   p_cons 6.225333e-01   p_joint 1.474000e-01

Joint ci ratio: 4.574997e-02	ci left: 1.515156e-01	ci right 1.586346e-01	k: 6202	n:40000
Cons ci ratio: 1.524981e-02	ci left: 6.181291e-01	ci right 6.276530e-01	k: 24916	n:40000
KS ci ratio: 8.735861e-02	ci left: 4.582759e-02	ci right 5.003836e-02	k: 1916	n:40000
ZNF185   40000 perm   9 sec   (4662 perm/sec)   p_kst 4.790000e-02   p_cons 6.229000e-01   p_joint 1.550500e-01

Outputting figure to mutsig2_images.part000000000195/ZNF185.3_2402_40000_0.0479_0.6229_0.15505.png
                gene_name: ZNF185
               theta_stop: 0.087 
                    nperm: 40000 
                     p_ks: 0.048 
        ci_ks_bounds_left: 0.046 
       ci_ks_bounds_right: 0.050 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 72 percent done.
ZNF192
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.099875e-01	ci left: 1.064680e-01	ci right 1.189587e-01	k: 1126	n:10000
Cons ci ratio: 1.632674e-01	ci left: 5.003500e-02	ci right 5.902673e-02	k: 544	n:10000
KS ci ratio: 4.853484e-02	ci left: 3.851018e-01	ci right 4.043596e-01	k: 3947	n:10000
ZNF192   10000 perm   2 sec   (6047 perm/sec)   p_kst 3.947000e-01   p_cons 5.440000e-02   p_joint 1.126000e-01

Joint ci ratio: 8.508172e-02	ci left: 9.185310e-02	ci right 1.000648e-01	k: 1918	n:20000
Cons ci ratio: 1.146183e-01	ci left: 5.207485e-02	ci right 5.845522e-02	k: 1104	n:20000
KS ci ratio: 3.476479e-02	ci left: 3.818363e-01	ci right 3.953961e-01	k: 7772	n:20000
ZNF192   20000 perm   4 sec   (5354 perm/sec)   p_kst 3.886000e-01   p_cons 5.520000e-02   p_joint 9.590000e-02

Joint ci ratio: 7.131347e-02	ci left: 8.822763e-02	ci right 9.478506e-02	k: 2744	n:30000
Cons ci ratio: 9.429574e-02	ci left: 5.189267e-02	ci right 5.706070e-02	k: 1633	n:30000
KS ci ratio: 2.863070e-02	ci left: 3.790231e-01	ci right 3.900660e-01	k: 11536	n:30000
ZNF192   30000 perm   6 sec   (5114 perm/sec)   p_kst 3.845333e-01   p_cons 5.443333e-02   p_joint 9.146667e-02

Outputting figure to mutsig2_images.part000000000195/ZNF192.3_1757_30000_0.38453_0.054433_0.091467.png
                gene_name: ZNF192
               theta_stop: 0.094 
                    nperm: 30000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.38 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.054 
      ci_cons_bounds_left: 0.052 
     ci_cons_bounds_right: 0.057 
                  p_joint: 0.091 
     ci_joint_bounds_left: 0.088 
    ci_joint_bounds_right: 0.095 

Current progress: 74 percent done.
ZNF200
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.081046e-01	ci left: 1.098838e-01	ci right 1.225407e-01	k: 1161	n:10000
Cons ci ratio: 5.489697e-02	ci left: 3.283299e-01	ci right 3.469648e-01	k: 3376	n:10000
KS ci ratio: 1.219806e-01	ci left: 8.786290e-02	ci right 9.937509e-02	k: 935	n:10000
ZNF200   10000 perm   2 sec   (6331 perm/sec)   p_kst 9.350000e-02   p_cons 3.376000e-01   p_joint 1.161000e-01

Joint ci ratio: 8.103225e-02	ci left: 1.004895e-01	ci right 1.090258e-01	k: 2094	n:20000
Cons ci ratio: 3.840086e-02	ci left: 3.359215e-01	ci right 3.491243e-01	k: 6850	n:20000
KS ci ratio: 8.428246e-02	ci left: 9.347166e-02	ci right 1.017457e-01	k: 1951	n:20000
ZNF200   20000 perm   4 sec   (5632 perm/sec)   p_kst 9.755000e-02   p_cons 3.425000e-01   p_joint 1.047000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF200.3_1204_20000_0.09755_0.3425_0.1047.png
                gene_name: ZNF200
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.098 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 75 percent done.
ZNF213
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.276448e-02	ci left: 7.391670e-01	ci right 7.562885e-01	k: 7478	n:10000
Cons ci ratio: 2.560606e-02	ci left: 6.918185e-01	ci right 7.098644e-01	k: 7009	n:10000
KS ci ratio: 3.807373e-02	ci left: 5.046513e-01	ci right 5.243403e-01	k: 5145	n:10000
ZNF213   10000 perm   2 sec   (6560 perm/sec)   p_kst 5.145000e-01   p_cons 7.009000e-01   p_joint 7.478000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF213.3_1400_10000_0.5145_0.7009_0.7478.png
                gene_name: ZNF213
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 76 percent done.
ZNF214
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.437565e-02	ci left: 8.750041e-01	ci right 8.877728e-01	k: 8815	n:10000
KS ci ratio: 2.596680e-02	ci left: 6.858703e-01	ci right 7.040160e-01	k: 6950	n:10000
ZNF214   10000 perm   2 sec   (5756 perm/sec)   p_kst 6.950000e-01   p_cons 8.815000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF214.3_1829_10000_0.695_0.8815_1.png
                gene_name: ZNF214
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
ZNF215
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.099457e-02	ci left: 7.688127e-01	ci right 7.852256e-01	k: 7771	n:10000
KS ci ratio: 3.490513e-02	ci left: 5.479000e-01	ci right 5.674664e-01	k: 5577	n:10000
ZNF215   10000 perm   2 sec   (5960 perm/sec)   p_kst 5.577000e-01   p_cons 7.771000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF215.3_1574_10000_0.5577_0.7771_1.png
                gene_name: ZNF215
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 79 percent done.
ZNF22
Processing conservation and coverage...
Processing mutations... 
Skipping 3 mutations outside transcript range of this gene.
Fewer than 2 mutations to analyze: skipping this gene...
Current progress: 80 percent done.
ZNF225
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.859697e-02	ci left: 8.085685e-01	ci right 8.238468e-01	k: 8163	n:10000
KS ci ratio: 2.287912e-02	ci left: 7.372464e-01	ci right 7.544102e-01	k: 7459	n:10000
ZNF225   10000 perm   2 sec   (5835 perm/sec)   p_kst 7.459000e-01   p_cons 8.163000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000195/ZNF225.3_2137_10000_0.7459_0.8163_1.png
                gene_name: ZNF225
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
ZNF229
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.442180e-02	ci left: 3.322029e-01	ci right 3.508895e-01	k: 3415	n:10000
Cons ci ratio: 1.097680e-01	ci left: 1.068582e-01	ci right 1.193681e-01	k: 1130	n:10000
KS ci ratio: 5.318683e-02	ci left: 3.425342e-01	ci right 3.613521e-01	k: 3519	n:10000
ZNF229   10000 perm   2 sec   (5747 perm/sec)   p_kst 3.519000e-01   p_cons 1.130000e-01   p_joint 3.415000e-01

Joint ci ratio: 6.894231e-02	ci left: 1.343318e-01	ci right 1.439734e-01	k: 2782	n:20000
Cons ci ratio: 8.114045e-02	ci left: 1.002440e-01	ci right 1.087714e-01	k: 2089	n:20000
KS ci ratio: 3.781568e-02	ci left: 3.428393e-01	ci right 3.561045e-01	k: 6989	n:20000
ZNF229   20000 perm   4 sec   (5144 perm/sec)   p_kst 3.494500e-01   p_cons 1.044500e-01   p_joint 1.391000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF229.3_2494_20000_0.34945_0.10445_0.1391.png
                gene_name: ZNF229
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 83 percent done.
ZNF233
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.293953e-02	ci left: 8.957999e-01	ci right 9.075649e-01	k: 9018	n:10000
Cons ci ratio: 2.402670e-02	ci left: 7.180521e-01	ci right 7.356156e-01	k: 7269	n:10000
KS ci ratio: 3.109098e-02	ci left: 6.041754e-01	ci right 6.233583e-01	k: 6138	n:10000
ZNF233   10000 perm   2 sec   (5690 perm/sec)   p_kst 6.138000e-01   p_cons 7.269000e-01   p_joint 9.018000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF233.3_2029_10000_0.6138_0.7269_0.9018.png
                gene_name: ZNF233
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.61 
        ci_ks_bounds_left: 0.60 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 84 percent done.
ZMYND19
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
Cons ci ratio: 4.803364e-03	ci left: 9.827447e-01	ci right 9.875666e-01	k: 9853	n:10000
KS ci ratio: 1.086451e+00	ci left: 6.202064e-04	ci right 2.095219e-03	k: 12	n:10000
ZMYND19   10000 perm   1 sec   (7016 perm/sec)   p_kst 1.200000e-03   p_cons 9.853000e-01   p_joint 7.700000e-03

Joint ci ratio: 3.374918e-01	ci left: 5.570785e-03	ci right 7.876145e-03	k: 133	n:20000
Cons ci ratio: 3.494611e-03	ci left: 9.825854e-01	ci right 9.860717e-01	k: 19688	n:20000
KS ci ratio: 7.034894e-01	ci left: 1.012265e-03	ci right 2.140657e-03	k: 30	n:20000
ZMYND19   20000 perm   3 sec   (6142 perm/sec)   p_kst 1.500000e-03   p_cons 9.844000e-01   p_joint 6.650000e-03

Joint ci ratio: 3.015816e-01	ci left: 4.756245e-03	ci right 6.474963e-03	k: 167	n:30000
Cons ci ratio: 2.894853e-03	ci left: 9.824461e-01	ci right 9.853258e-01	k: 29518	n:30000
KS ci ratio: 5.839110e-01	ci left: 1.065878e-03	ci right 1.968437e-03	k: 44	n:30000
ZMYND19   30000 perm   5 sec   (5823 perm/sec)   p_kst 1.466667e-03   p_cons 9.839333e-01   p_joint 5.566667e-03

Joint ci ratio: 2.764886e-01	ci left: 4.309143e-03	ci right 5.714198e-03	k: 199	n:40000
Cons ci ratio: 2.538537e-03	ci left: 9.822293e-01	ci right 9.847498e-01	k: 39341	n:40000
KS ci ratio: 5.143415e-01	ci left: 1.079454e-03	ci right 1.845864e-03	k: 57	n:40000
ZMYND19   40000 perm   7 sec   (5595 perm/sec)   p_kst 1.425000e-03   p_cons 9.835250e-01   p_joint 4.975000e-03

Joint ci ratio: 2.463113e-01	ci left: 4.419408e-03	ci right 5.679111e-03	k: 251	n:50000
Cons ci ratio: 2.271964e-03	ci left: 9.823449e-01	ci right 9.845984e-01	k: 49175	n:50000
KS ci ratio: 4.681969e-01	ci left: 1.073876e-03	ci right 1.746158e-03	k: 69	n:50000
ZMYND19   50000 perm   9 sec   (5420 perm/sec)   p_kst 1.380000e-03   p_cons 9.835000e-01   p_joint 5.020000e-03

Joint ci ratio: 2.261320e-01	ci left: 4.419886e-03	ci right 5.562136e-03	k: 298	n:60000
Cons ci ratio: 2.074878e-03	ci left: 9.824315e-01	ci right 9.844880e-01	k: 59009	n:60000
KS ci ratio: 4.248789e-01	ci left: 1.116844e-03	ci right 1.733006e-03	k: 84	n:60000
ZMYND19   60000 perm   11 sec   (5279 perm/sec)   p_kst 1.400000e-03   p_cons 9.834833e-01   p_joint 4.966667e-03

Joint ci ratio: 2.258342e-01	ci left: 3.801810e-03	ci right 4.782838e-03	k: 299	n:70000
Cons ci ratio: 1.906296e-03	ci left: 9.827639e-01	ci right 9.846529e-01	k: 68861	n:70000
KS ci ratio: 3.917171e-01	ci left: 1.149606e-03	ci right 1.721577e-03	k: 99	n:70000
ZMYND19   70000 perm   14 sec   (5155 perm/sec)   p_kst 1.414286e-03   p_cons 9.837286e-01   p_joint 4.271429e-03

Joint ci ratio: 1.832480e-01	ci left: 5.166207e-03	ci right 6.220127e-03	k: 454	n:80000
Cons ci ratio: 1.781196e-03	ci left: 9.828627e-01	ci right 9.846270e-01	k: 78701	n:80000
KS ci ratio: 3.668777e-01	ci left: 1.164237e-03	ci right 1.697972e-03	k: 113	n:80000
ZMYND19   80000 perm   16 sec   (4995 perm/sec)   p_kst 1.412500e-03   p_cons 9.837625e-01   p_joint 5.675000e-03

Joint ci ratio: 1.899220e-01	ci left: 4.263630e-03	ci right 5.168748e-03	k: 423	n:90000
Cons ci ratio: 1.683123e-03	ci left: 9.828400e-01	ci right 9.845064e-01	k: 88532	n:90000
KS ci ratio: 3.462339e-01	ci left: 1.176511e-03	ci right 1.678730e-03	k: 127	n:90000
ZMYND19   90000 perm   18 sec   (4888 perm/sec)   p_kst 1.411111e-03   p_cons 9.836889e-01   p_joint 4.700000e-03

Joint ci ratio: 1.803898e-01	ci left: 4.275958e-03	ci right 5.133159e-03	k: 469	n:100000
Cons ci ratio: 1.588670e-03	ci left: 9.830495e-01	ci right 9.846222e-01	k: 98385	n:100000
KS ci ratio: 3.298891e-01	ci left: 1.177831e-03	ci right 1.651847e-03	k: 140	n:100000
ZMYND19   100000 perm   21 sec   (4790 perm/sec)   p_kst 1.400000e-03   p_cons 9.838500e-01   p_joint 4.690000e-03

Joint ci ratio: 1.531809e-01	ci left: 5.464688e-03	ci right 6.379839e-03	k: 650	n:110000
Cons ci ratio: 1.513614e-03	ci left: 9.831109e-01	ci right 9.846089e-01	k: 108226	n:110000
KS ci ratio: 3.156600e-01	ci left: 1.179367e-03	ci right 1.629400e-03	k: 153	n:110000
ZMYND19   110000 perm   23 sec   (4694 perm/sec)   p_kst 1.390909e-03   p_cons 9.838727e-01   p_joint 5.909091e-03

Joint ci ratio: 1.441473e-01	ci left: 5.683323e-03	ci right 6.574131e-03	k: 734	n:120000
Cons ci ratio: 1.453597e-03	ci left: 9.830442e-01	ci right 9.844823e-01	k: 118053	n:120000
KS ci ratio: 2.995550e-01	ci left: 1.211829e-03	ci right 1.646173e-03	k: 170	n:120000
ZMYND19   120000 perm   26 sec   (4607 perm/sec)   p_kst 1.416667e-03   p_cons 9.837750e-01   p_joint 6.116667e-03

Joint ci ratio: 1.106079e-01	ci left: 9.039656e-03	ci right 1.010547e-02	k: 1243	n:130000
Cons ci ratio: 1.395452e-03	ci left: 9.830990e-01	ci right 9.844793e-01	k: 127894	n:130000
KS ci ratio: 2.856875e-01	ci left: 1.239790e-03	ci right 1.659877e-03	k: 187	n:130000
ZMYND19   130000 perm   29 sec   (4525 perm/sec)   p_kst 1.438462e-03   p_cons 9.838000e-01   p_joint 9.561538e-03

Joint ci ratio: 1.066525e-01	ci left: 9.047156e-03	ci right 1.007331e-02	k: 1337	n:140000
Cons ci ratio: 1.338028e-03	ci left: 9.832853e-01	ci right 9.846088e-01	k: 137754	n:140000
KS ci ratio: 2.798029e-01	ci left: 1.204321e-03	ci right 1.602503e-03	k: 195	n:140000
ZMYND19   140000 perm   32 sec   (4424 perm/sec)   p_kst 1.392857e-03   p_cons 9.839571e-01   p_joint 9.550000e-03

Joint ci ratio: 1.024808e-01	ci left: 9.164690e-03	ci right 1.016107e-02	k: 1448	n:150000
Cons ci ratio: 1.296066e-03	ci left: 9.832231e-01	ci right 9.845047e-01	k: 147581	n:150000
KS ci ratio: 2.696732e-01	ci left: 1.217148e-03	ci right 1.602538e-03	k: 210	n:150000
ZMYND19   150000 perm   34 sec   (4349 perm/sec)   p_kst 1.400000e-03   p_cons 9.838733e-01   p_joint 9.653333e-03

Joint ci ratio: 9.924611e-02	ci left: 9.176765e-03	ci right 1.014113e-02	k: 1544	n:160000
Cons ci ratio: 1.252109e-03	ci left: 9.833159e-01	ci right 9.845540e-01	k: 157431	n:160000
KS ci ratio: 2.577300e-01	ci left: 1.257821e-03	ci right 1.635615e-03	k: 230	n:160000
ZMYND19   160000 perm   37 sec   (4273 perm/sec)   p_kst 1.437500e-03   p_cons 9.839438e-01   p_joint 9.650000e-03

Joint ci ratio: 9.759905e-02	ci left: 8.940992e-03	ci right 9.864091e-03	k: 1597	n:170000
Cons ci ratio: 1.208238e-03	ci left: 9.835061e-01	ci right 9.847008e-01	k: 167299	n:170000
KS ci ratio: 2.502584e-01	ci left: 1.260943e-03	ci right 1.626986e-03	k: 244	n:170000
ZMYND19   170000 perm   40 sec   (4209 perm/sec)   p_kst 1.435294e-03   p_cons 9.841118e-01   p_joint 9.394118e-03

Joint ci ratio: 9.493424e-02	ci left: 8.937653e-03	ci right 9.833810e-03	k: 1688	n:180000
Cons ci ratio: 1.172958e-03	ci left: 9.835567e-01	ci right 9.847165e-01	k: 177146	n:180000
KS ci ratio: 2.429318e-01	ci left: 1.269076e-03	ci right 1.625069e-03	k: 259	n:180000
ZMYND19   180000 perm   43 sec   (4146 perm/sec)   p_kst 1.438889e-03   p_cons 9.841444e-01   p_joint 9.377778e-03

Joint ci ratio: 9.211146e-02	ci left: 9.006972e-03	ci right 9.881778e-03	k: 1793	n:190000
Cons ci ratio: 1.143288e-03	ci left: 9.835275e-01	ci right 9.846577e-01	k: 186979	n:190000
KS ci ratio: 2.370781e-01	ci left: 1.266590e-03	ci right 1.612067e-03	k: 272	n:190000
ZMYND19   190000 perm   47 sec   (4083 perm/sec)   p_kst 1.431579e-03   p_cons 9.841000e-01   p_joint 9.436842e-03

Joint ci ratio: 9.179839e-02	ci left: 8.620049e-03	ci right 9.454274e-03	k: 1806	n:200000
Cons ci ratio: 1.110765e-03	ci left: 9.836439e-01	ci right 9.847420e-01	k: 196840	n:200000
KS ci ratio: 2.316281e-01	ci left: 1.264444e-03	ci right 1.600273e-03	k: 285	n:200000
ZMYND19   200000 perm   50 sec   (4021 perm/sec)   p_kst 1.425000e-03   p_cons 9.842000e-01   p_joint 9.030000e-03

Joint ci ratio: 1.185339e-01	ci left: 4.873742e-03	ci right 5.492418e-03	k: 1087	n:210000
Cons ci ratio: 1.080665e-03	ci left: 9.837544e-01	ci right 9.848227e-01	k: 206702	n:210000
KS ci ratio: 2.265375e-01	ci left: 1.262585e-03	ci right 1.589521e-03	k: 298	n:210000
ZMYND19   210000 perm   53 sec   (3949 perm/sec)   p_kst 1.419048e-03   p_cons 9.842952e-01   p_joint 5.176190e-03

Joint ci ratio: 1.284083e-01	ci left: 3.947238e-03	ci right 4.493224e-03	k: 927	n:220000
Cons ci ratio: 1.055805e-03	ci left: 9.837672e-01	ci right 9.848109e-01	k: 216545	n:220000
KS ci ratio: 2.221251e-01	ci left: 1.256675e-03	ci right 1.574876e-03	k: 310	n:220000
ZMYND19   220000 perm   57 sec   (3892 perm/sec)   p_kst 1.409091e-03   p_cons 9.842955e-01   p_joint 4.213636e-03

Joint ci ratio: 1.250166e-01	ci left: 3.990335e-03	ci right 4.526624e-03	k: 978	n:230000
Cons ci ratio: 1.027783e-03	ci left: 9.839250e-01	ci right 9.849410e-01	k: 226421	n:230000
KS ci ratio: 2.166219e-01	ci left: 1.267781e-03	ci right 1.579784e-03	k: 326	n:230000
ZMYND19   230000 perm   60 sec   (3833 perm/sec)   p_kst 1.417391e-03   p_cons 9.844391e-01   p_joint 4.252174e-03

Joint ci ratio: 1.223582e-01	ci left: 3.997696e-03	ci right 4.522721e-03	k: 1021	n:240000
Cons ci ratio: 1.006738e-03	ci left: 9.839174e-01	ci right 9.849125e-01	k: 236261	n:240000
KS ci ratio: 2.124408e-01	ci left: 1.266213e-03	ci right 1.571032e-03	k: 339	n:240000
ZMYND19   240000 perm   63 sec   (3780 perm/sec)   p_kst 1.412500e-03   p_cons 9.844208e-01   p_joint 4.254167e-03

Joint ci ratio: 8.455408e-02	ci left: 8.163427e-03	ci right 8.888036e-03	k: 2130	n:250000
Cons ci ratio: 9.838448e-04	ci left: 9.840081e-01	ci right 9.849806e-01	k: 246125	n:250000
KS ci ratio: 2.061664e-01	ci left: 1.295165e-03	ci right 1.596584e-03	k: 360	n:250000
ZMYND19   250000 perm   67 sec   (3728 perm/sec)   p_kst 1.440000e-03   p_cons 9.845000e-01   p_joint 8.520000e-03

Joint ci ratio: 8.054890e-02	ci left: 8.663163e-03	ci right 9.393998e-03	k: 2346	n:260000
Cons ci ratio: 9.646132e-04	ci left: 9.840217e-01	ci right 9.849751e-01	k: 255971	n:260000
KS ci ratio: 2.033706e-01	ci left: 1.281839e-03	ci right 1.575609e-03	k: 370	n:260000
ZMYND19   260000 perm   71 sec   (3679 perm/sec)   p_kst 1.423077e-03   p_cons 9.845038e-01   p_joint 9.023077e-03

Joint ci ratio: 1.138658e-01	ci left: 4.121439e-03	ci right 4.622625e-03	k: 1179	n:270000
Cons ci ratio: 9.471560e-04	ci left: 9.840119e-01	ci right 9.849480e-01	k: 265811	n:270000
KS ci ratio: 1.968425e-01	ci left: 1.322321e-03	ci right 1.614474e-03	k: 395	n:270000
ZMYND19   270000 perm   74 sec   (3631 perm/sec)   p_kst 1.462963e-03   p_cons 9.844852e-01   p_joint 4.366667e-03

Joint ci ratio: 1.122619e-01	ci left: 4.092235e-03	ci right 4.582397e-03	k: 1213	n:280000
Cons ci ratio: 9.287634e-04	ci left: 9.840646e-01	ci right 9.849825e-01	k: 275668	n:280000
KS ci ratio: 1.953711e-01	ci left: 1.295470e-03	ci right 1.579296e-03	k: 401	n:280000
ZMYND19   280000 perm   78 sec   (3583 perm/sec)   p_kst 1.432143e-03   p_cons 9.845286e-01   p_joint 4.332143e-03

Joint ci ratio: 1.092822e-01	ci left: 4.175768e-03	ci right 4.661804e-03	k: 1280	n:290000
Cons ci ratio: 9.130489e-04	ci left: 9.840578e-01	ci right 9.849601e-01	k: 285509	n:290000
KS ci ratio: 1.902325e-01	ci left: 1.323001e-03	ci right 1.604355e-03	k: 423	n:290000
ZMYND19   290000 perm   82 sec   (3537 perm/sec)   p_kst 1.458621e-03   p_cons 9.845138e-01   p_joint 4.413793e-03

Joint ci ratio: 7.289804e-02	ci left: 9.198510e-03	ci right 9.897680e-03	k: 2863	n:300000
Cons ci ratio: 8.977128e-04	ci left: 9.840651e-01	ci right 9.849522e-01	k: 295354	n:300000
KS ci ratio: 1.880296e-01	ci left: 1.310655e-03	ci right 1.585787e-03	k: 433	n:300000
ZMYND19   300000 perm   86 sec   (3489 perm/sec)   p_kst 1.443333e-03   p_cons 9.845133e-01   p_joint 9.543333e-03

Joint ci ratio: 7.176733e-02	ci left: 9.190021e-03	ci right 9.877259e-03	k: 2954	n:310000
Cons ci ratio: 8.866671e-04	ci left: 9.839478e-01	ci right 9.848238e-01	k: 305161	n:310000
KS ci ratio: 1.852756e-01	ci left: 1.308352e-03	ci right 1.578526e-03	k: 446	n:310000
ZMYND19   310000 perm   90 sec   (3443 perm/sec)   p_kst 1.438710e-03   p_cons 9.843903e-01   p_joint 9.529032e-03

Joint ci ratio: 7.062915e-02	ci left: 9.197493e-03	ci right 9.873934e-03	k: 3050	n:320000
Cons ci ratio: 8.711822e-04	ci left: 9.840090e-01	ci right 9.848697e-01	k: 315022	n:320000
KS ci ratio: 1.816532e-01	ci left: 1.321133e-03	ci right 1.588026e-03	k: 464	n:320000
ZMYND19   320000 perm   94 sec   (3399 perm/sec)   p_kst 1.450000e-03   p_cons 9.844437e-01   p_joint 9.531250e-03

Joint ci ratio: 6.954346e-02	ci left: 9.204592e-03	ci right 9.870730e-03	k: 3146	n:330000
Cons ci ratio: 8.585094e-04	ci left: 9.839929e-01	ci right 9.848410e-01	k: 324859	n:330000
KS ci ratio: 1.793544e-01	ci left: 1.315819e-03	ci right 1.577909e-03	k: 476	n:330000
ZMYND19   330000 perm   98 sec   (3354 perm/sec)   p_kst 1.442424e-03   p_cons 9.844212e-01   p_joint 9.533333e-03

Joint ci ratio: 6.528031e-02	ci left: 1.015141e-02	ci right 1.083933e-02	k: 3567	n:340000
Cons ci ratio: 8.456428e-04	ci left: 9.840047e-01	ci right 9.848400e-01	k: 334705	n:340000
KS ci ratio: 1.765991e-01	ci left: 1.319271e-03	ci right 1.577581e-03	k: 491	n:340000
ZMYND19   340000 perm   103 sec   (3312 perm/sec)   p_kst 1.444118e-03   p_cons 9.844265e-01   p_joint 1.049118e-02

Joint ci ratio: 5.401852e-02	ci left: 1.442228e-02	ci right 1.522578e-02	k: 5187	n:350000
Cons ci ratio: 8.340364e-04	ci left: 9.839898e-01	ci right 9.848136e-01	k: 344542	n:350000
KS ci ratio: 1.739669e-01	ci left: 1.322555e-03	ci right 1.577243e-03	k: 506	n:350000
ZMYND19   350000 perm   107 sec   (3272 perm/sec)   p_kst 1.445714e-03   p_cons 9.844057e-01   p_joint 1.482000e-02

Joint ci ratio: 5.508430e-02	ci left: 1.348995e-02	ci right 1.425680e-02	k: 4993	n:360000
Cons ci ratio: 8.210332e-04	ci left: 9.840462e-01	ci right 9.848571e-01	k: 354404	n:360000
KS ci ratio: 1.714491e-01	ci left: 1.325683e-03	ci right 1.576896e-03	k: 521	n:360000
ZMYND19   360000 perm   111 sec   (3234 perm/sec)   p_kst 1.447222e-03   p_cons 9.844556e-01   p_joint 1.386944e-02

Joint ci ratio: 6.590786e-02	ci left: 9.158029e-03	ci right 9.784824e-03	k: 3503	n:370000
Cons ci ratio: 8.111862e-04	ci left: 9.840010e-01	ci right 9.848022e-01	k: 364230	n:370000
KS ci ratio: 1.699912e-01	ci left: 1.313138e-03	ci right 1.559641e-03	k: 530	n:370000
ZMYND19   370000 perm   116 sec   (3195 perm/sec)   p_kst 1.432432e-03   p_cons 9.844054e-01   p_joint 9.467568e-03

Joint ci ratio: 6.508695e-02	ci left: 9.147401e-03	ci right 9.765377e-03	k: 3592	n:380000
Cons ci ratio: 8.007178e-04	ci left: 9.839956e-01	ci right 9.847864e-01	k: 374070	n:380000
KS ci ratio: 1.679480e-01	ci left: 1.311346e-03	ci right 1.554254e-03	k: 543	n:380000
ZMYND19   380000 perm   120 sec   (3157 perm/sec)   p_kst 1.428947e-03   p_cons 9.843947e-01   p_joint 9.452632e-03

Joint ci ratio: 6.424315e-02	ci left: 9.152504e-03	ci right 9.762510e-03	k: 3687	n:390000
Cons ci ratio: 7.891925e-04	ci left: 9.840477e-01	ci right 9.848271e-01	k: 383932	n:390000
KS ci ratio: 1.650888e-01	ci left: 1.324410e-03	ci right 1.565147e-03	k: 562	n:390000
ZMYND19   390000 perm   125 sec   (3120 perm/sec)   p_kst 1.441026e-03   p_cons 9.844410e-01   p_joint 9.453846e-03

Joint ci ratio: 6.347371e-02	ci left: 9.145097e-03	ci right 9.747041e-03	k: 3777	n:400000
Cons ci ratio: 7.791625e-04	ci left: 9.840567e-01	ci right 9.848262e-01	k: 393778	n:400000
KS ci ratio: 1.640735e-01	ci left: 1.308078e-03	ci right 1.544239e-03	k: 569	n:400000
ZMYND19   400000 perm   130 sec   (3082 perm/sec)   p_kst 1.422500e-03   p_cons 9.844450e-01   p_joint 9.442500e-03

Joint ci ratio: 6.256004e-02	ci left: 9.188518e-03	ci right 9.784299e-03	k: 3888	n:410000
Cons ci ratio: 7.696893e-04	ci left: 9.840580e-01	ci right 9.848181e-01	k: 403621	n:410000
KS ci ratio: 1.620950e-01	ci left: 1.308926e-03	ci right 1.542114e-03	k: 583	n:410000
ZMYND19   410000 perm   135 sec   (3046 perm/sec)   p_kst 1.421951e-03   p_cons 9.844415e-01   p_joint 9.482927e-03

Joint ci ratio: 9.161100e-02	ci left: 4.141571e-03	ci right 4.541505e-03	k: 1822	n:420000
Cons ci ratio: 7.606125e-04	ci left: 9.840568e-01	ci right 9.848079e-01	k: 413463	n:420000
KS ci ratio: 1.605903e-01	ci left: 1.302894e-03	ci right 1.532644e-03	k: 594	n:420000
ZMYND19   420000 perm   140 sec   (3011 perm/sec)   p_kst 1.414286e-03   p_cons 9.844357e-01   p_joint 4.338095e-03

Joint ci ratio: 9.037926e-02	ci left: 4.158890e-03	ci right 4.554812e-03	k: 1872	n:430000
Cons ci ratio: 7.529891e-04	ci left: 9.840087e-01	ci right 9.847522e-01	k: 423285	n:430000
KS ci ratio: 1.587337e-01	ci left: 1.303851e-03	ci right 1.530859e-03	k: 608	n:430000
ZMYND19   430000 perm   145 sec   (2974 perm/sec)   p_kst 1.413953e-03   p_cons 9.843837e-01   p_joint 4.353488e-03

Joint ci ratio: 8.945322e-02	ci left: 4.151012e-03	ci right 4.541923e-03	k: 1911	n:440000
Cons ci ratio: 7.448682e-04	ci left: 9.839927e-01	ci right 9.847282e-01	k: 433120	n:440000
KS ci ratio: 1.568141e-01	ci left: 1.306964e-03	ci right 1.531502e-03	k: 623	n:440000
ZMYND19   440000 perm   150 sec   (2940 perm/sec)   p_kst 1.415909e-03   p_cons 9.843636e-01   p_joint 4.343182e-03

Joint ci ratio: 8.823767e-02	ci left: 4.173930e-03	ci right 4.561383e-03	k: 1964	n:450000
Cons ci ratio: 7.358867e-04	ci left: 9.840247e-01	ci right 9.847513e-01	k: 442976	n:450000
KS ci ratio: 1.553281e-01	ci left: 1.303545e-03	ci right 1.525177e-03	k: 635	n:450000
ZMYND19   450000 perm   155 sec   (2907 perm/sec)   p_kst 1.411111e-03   p_cons 9.843911e-01   p_joint 4.364444e-03

Joint ci ratio: 8.722243e-02	ci left: 4.180999e-03	ci right 4.564415e-03	k: 2010	n:460000
Cons ci ratio: 7.285073e-04	ci left: 9.840004e-01	ci right 9.847196e-01	k: 452807	n:460000
KS ci ratio: 1.528243e-01	ci left: 1.319100e-03	ci right 1.539430e-03	k: 656	n:460000
ZMYND19   460000 perm   160 sec   (2874 perm/sec)   p_kst 1.426087e-03   p_cons 9.843630e-01   p_joint 4.369565e-03

Joint ci ratio: 8.638920e-02	ci left: 4.173218e-03	ci right 4.552080e-03	k: 2049	n:470000
Cons ci ratio: 7.211940e-04	ci left: 9.839836e-01	ci right 9.846956e-01	k: 462641	n:470000
KS ci ratio: 1.520178e-01	ci left: 1.305359e-03	ci right 1.522139e-03	k: 663	n:470000
ZMYND19   470000 perm   165 sec   (2845 perm/sec)   p_kst 1.410638e-03   p_cons 9.843426e-01   p_joint 4.359574e-03

Joint ci ratio: 8.539485e-02	ci left: 4.184129e-03	ci right 4.559392e-03	k: 2097	n:480000
Cons ci ratio: 7.141919e-04	ci left: 9.839633e-01	ci right 9.846683e-01	k: 472473	n:480000
KS ci ratio: 1.503292e-01	ci left: 1.308232e-03	ci right 1.522859e-03	k: 678	n:480000
ZMYND19   480000 perm   171 sec   (2813 perm/sec)   p_kst 1.412500e-03   p_cons 9.843188e-01   p_joint 4.368750e-03

Joint ci ratio: 8.441431e-02	ci left: 4.196617e-03	ci right 4.568465e-03	k: 2146	n:490000
Cons ci ratio: 7.065474e-04	ci left: 9.839810e-01	ci right 9.846785e-01	k: 482323	n:490000
KS ci ratio: 1.479503e-01	ci left: 1.324757e-03	ci right 1.538351e-03	k: 700	n:490000
ZMYND19   490000 perm   176 sec   (2784 perm/sec)   p_kst 1.428571e-03   p_cons 9.843327e-01   p_joint 4.379592e-03

Joint ci ratio: 8.350498e-02	ci left: 4.204712e-03	ci right 4.573068e-03	k: 2193	n:500000
Cons ci ratio: 7.006836e-04	ci left: 9.839294e-01	ci right 9.846210e-01	k: 492139	n:500000
KS ci ratio: 1.459844e-01	ci left: 1.334865e-03	ci right 1.546980e-03	k: 719	n:500000
ZMYND19   500000 perm   182 sec   (2754 perm/sec)   p_kst 1.438000e-03   p_cons 9.842780e-01   p_joint 4.386000e-03

Joint ci ratio: 8.273574e-02	ci left: 4.200987e-03	ci right 4.565463e-03	k: 2234	n:510000
Cons ci ratio: 6.937257e-04	ci left: 9.839353e-01	ci right 9.846200e-01	k: 501983	n:510000
KS ci ratio: 1.446843e-01	ci left: 1.333254e-03	ci right 1.543063e-03	k: 732	n:510000
ZMYND19   510000 perm   187 sec   (2726 perm/sec)   p_kst 1.435294e-03   p_cons 9.842804e-01   p_joint 4.380392e-03

Joint ci ratio: 8.202358e-02	ci left: 4.193653e-03	ci right 4.554211e-03	k: 2273	n:520000
Cons ci ratio: 6.868430e-04	ci left: 9.839468e-01	ci right 9.846247e-01	k: 511830	n:520000
KS ci ratio: 1.431304e-01	ci left: 1.337276e-03	ci right 1.545265e-03	k: 748	n:520000
ZMYND19   520000 perm   193 sec   (2699 perm/sec)   p_kst 1.438462e-03   p_cons 9.842885e-01   p_joint 4.371154e-03

Joint ci ratio: 8.134716e-02	ci left: 4.184760e-03	ci right 4.541446e-03	k: 2311	n:530000
Cons ci ratio: 6.806588e-04	ci left: 9.839350e-01	ci right 9.846068e-01	k: 521665	n:530000
KS ci ratio: 1.421849e-01	ci left: 1.330239e-03	ci right 1.535651e-03	k: 758	n:530000
ZMYND19   530000 perm   199 sec   (2669 perm/sec)   p_kst 1.430189e-03   p_cons 9.842736e-01   p_joint 4.360377e-03

Joint ci ratio: 8.060113e-02	ci left: 4.185282e-03	ci right 4.538587e-03	k: 2354	n:540000
Cons ci ratio: 6.735085e-04	ci left: 9.839761e-01	ci right 9.846409e-01	k: 531528	n:540000
KS ci ratio: 1.409829e-01	ci left: 1.328826e-03	ci right 1.532139e-03	k: 771	n:540000
ZMYND19   540000 perm   205 sec   (2629 perm/sec)   p_kst 1.427778e-03   p_cons 9.843111e-01   p_joint 4.359259e-03

Joint ci ratio: 7.995902e-02	ci left: 4.176889e-03	ci right 4.526546e-03	k: 2392	n:550000
Cons ci ratio: 6.668898e-04	ci left: 9.840011e-01	ci right 9.846593e-01	k: 541383	n:550000
KS ci ratio: 1.394554e-01	ci left: 1.334491e-03	ci right 1.536274e-03	k: 788	n:550000
ZMYND19   550000 perm   211 sec   (2603 perm/sec)   p_kst 1.432727e-03   p_cons 9.843327e-01   p_joint 4.349091e-03

Joint ci ratio: 7.926655e-02	ci left: 4.175808e-03	ci right 4.522207e-03	k: 2434	n:560000
Cons ci ratio: 6.601549e-04	ci left: 9.840396e-01	ci right 9.846911e-01	k: 551246	n:560000
KS ci ratio: 1.385805e-01	ci left: 1.327896e-03	ci right 1.527319e-03	k: 798	n:560000
ZMYND19   560000 perm   217 sec   (2577 perm/sec)   p_kst 1.425000e-03   p_cons 9.843679e-01   p_joint 4.346429e-03

Joint ci ratio: 7.859176e-02	ci left: 4.174778e-03	ci right 4.518009e-03	k: 2476	n:570000
Cons ci ratio: 6.538035e-04	ci left: 9.840679e-01	ci right 9.847132e-01	k: 561104	n:570000
KS ci ratio: 1.372133e-01	ci left: 1.331702e-03	ci right 1.529562e-03	k: 814	n:570000
ZMYND19   570000 perm   223 sec   (2552 perm/sec)   p_kst 1.428070e-03   p_cons 9.843930e-01   p_joint 4.343860e-03

Joint ci ratio: 7.779445e-02	ci left: 4.189012e-03	ci right 4.529761e-03	k: 2527	n:580000
Cons ci ratio: 6.487575e-04	ci left: 9.840412e-01	ci right 9.846815e-01	k: 570931	n:580000
KS ci ratio: 1.359677e-01	ci left: 1.333720e-03	ci right 1.529935e-03	k: 829	n:580000
ZMYND19   580000 perm   229 sec   (2527 perm/sec)   p_kst 1.429310e-03   p_cons 9.843638e-01   p_joint 4.356897e-03

Joint ci ratio: 7.703593e-02	ci left: 4.201118e-03	ci right 4.539370e-03	k: 2577	n:590000
Cons ci ratio: 6.430102e-04	ci left: 9.840549e-01	ci right 9.846895e-01	k: 580781	n:590000
KS ci ratio: 1.344371e-01	ci left: 1.342229e-03	ci right 1.537296e-03	k: 848	n:590000
ZMYND19   590000 perm   236 sec   (2505 perm/sec)   p_kst 1.437288e-03   p_cons 9.843746e-01   p_joint 4.367797e-03

Joint ci ratio: 7.647474e-02	ci left: 4.193217e-03	ci right 4.528264e-03	k: 2615	n:600000
Cons ci ratio: 6.375508e-04	ci left: 9.840614e-01	ci right 9.846906e-01	k: 590627	n:600000
KS ci ratio: 1.334972e-01	ci left: 1.339188e-03	ci right 1.532344e-03	k: 860	n:600000
ZMYND19   600000 perm   242 sec   (2481 perm/sec)   p_kst 1.433333e-03   p_cons 9.843783e-01   p_joint 4.358333e-03

Joint ci ratio: 7.579666e-02	ci left: 4.200058e-03	ci right 4.532545e-03	k: 2662	n:610000
Cons ci ratio: 6.322956e-04	ci left: 9.840644e-01	ci right 9.846884e-01	k: 600471	n:610000
KS ci ratio: 1.321982e-01	ci left: 1.344177e-03	ci right 1.536018e-03	k: 877	n:610000
ZMYND19   610000 perm   248 sec   (2458 perm/sec)   p_kst 1.437705e-03   p_cons 9.843787e-01   p_joint 4.363934e-03

Joint ci ratio: 7.526193e-02	ci left: 4.192447e-03	ci right 4.521888e-03	k: 2700	n:620000
Cons ci ratio: 6.267076e-04	ci left: 9.840901e-01	ci right 9.847086e-01	k: 610329	n:620000
KS ci ratio: 1.311568e-01	ci left: 1.344333e-03	ci right 1.534568e-03	k: 891	n:620000
ZMYND19   620000 perm   255 sec   (2431 perm/sec)   p_kst 1.437097e-03   p_cons 9.844016e-01   p_joint 4.354839e-03

Joint ci ratio: 7.460171e-02	ci left: 4.200664e-03	ci right 4.527729e-03	k: 2748	n:630000
Cons ci ratio: 6.219066e-04	ci left: 9.840830e-01	ci right 9.846967e-01	k: 620167	n:630000
KS ci ratio: 1.302836e-01	ci left: 1.341419e-03	ci right 1.529880e-03	k: 903	n:630000
ZMYND19   630000 perm   262 sec   (2406 perm/sec)   p_kst 1.433333e-03   p_cons 9.843921e-01   p_joint 4.361905e-03

Joint ci ratio: 7.399842e-02	ci left: 4.204035e-03	ci right 4.528602e-03	k: 2793	n:640000
Cons ci ratio: 6.170886e-04	ci left: 9.840824e-01	ci right 9.846914e-01	k: 630009	n:640000
KS ci ratio: 1.295694e-01	ci left: 1.335577e-03	ci right 1.522108e-03	k: 913	n:640000
ZMYND19   640000 perm   268 sec   (2384 perm/sec)   p_kst 1.426563e-03   p_cons 9.843891e-01   p_joint 4.364062e-03

Joint ci ratio: 7.342253e-02	ci left: 4.205802e-03	ci right 4.527870e-03	k: 2837	n:650000
Cons ci ratio: 6.125035e-04	ci left: 9.840756e-01	ci right 9.846801e-01	k: 639847	n:650000
KS ci ratio: 1.287273e-01	ci left: 1.332894e-03	ci right 1.517749e-03	k: 925	n:650000
ZMYND19   650000 perm   275 sec   (2363 perm/sec)   p_kst 1.423077e-03   p_cons 9.843800e-01   p_joint 4.364615e-03

Joint ci ratio: 7.270800e-02	ci left: 4.225378e-03	ci right 4.545663e-03	k: 2893	n:660000
Cons ci ratio: 6.086173e-04	ci left: 9.840385e-01	ci right 9.846391e-01	k: 649665	n:660000
KS ci ratio: 1.271570e-01	ci left: 1.346433e-03	ci right 1.530715e-03	k: 948	n:660000
ZMYND19   660000 perm   282 sec   (2341 perm/sec)   p_kst 1.436364e-03   p_cons 9.843409e-01   p_joint 4.383333e-03

Joint ci ratio: 7.194049e-02	ci left: 4.253178e-03	ci right 4.572026e-03	k: 2955	n:670000
Cons ci ratio: 6.049757e-04	ci left: 9.839935e-01	ci right 9.845904e-01	k: 659477	n:670000
KS ci ratio: 1.259024e-01	ci left: 1.353797e-03	ci right 1.537124e-03	k: 967	n:670000
ZMYND19   670000 perm   289 sec   (2319 perm/sec)   p_kst 1.443284e-03   p_cons 9.842940e-01   p_joint 4.410448e-03

Joint ci ratio: 7.139903e-02	ci left: 4.255622e-03	ci right 4.572152e-03	k: 3000	n:680000
Cons ci ratio: 6.009085e-04	ci left: 9.839750e-01	ci right 9.845679e-01	k: 669306	n:680000
KS ci ratio: 1.246843e-01	ci left: 1.360954e-03	ci right 1.543335e-03	k: 986	n:680000
ZMYND19   680000 perm   296 sec   (2298 perm/sec)   p_kst 1.450000e-03   p_cons 9.842735e-01   p_joint 4.411765e-03

Joint ci ratio: 7.096328e-02	ci left: 4.246615e-03	ci right 4.560467e-03	k: 3037	n:690000
Cons ci ratio: 5.968934e-04	ci left: 9.839586e-01	ci right 9.845475e-01	k: 679136	n:690000
KS ci ratio: 1.243078e-01	ci left: 1.349655e-03	ci right 1.529935e-03	k: 992	n:690000
ZMYND19   690000 perm   303 sec   (2277 perm/sec)   p_kst 1.437681e-03   p_cons 9.842551e-01   p_joint 4.401449e-03

Joint ci ratio: 7.040903e-02	ci left: 4.253309e-03	ci right 4.565100e-03	k: 3085	n:700000
Cons ci ratio: 5.930114e-04	ci left: 9.839397e-01	ci right 9.845248e-01	k: 688964	n:700000
KS ci ratio: 1.233794e-01	ci left: 1.351139e-03	ci right 1.530171e-03	k: 1007	n:700000
ZMYND19   700000 perm   310 sec   (2258 perm/sec)   p_kst 1.438571e-03   p_cons 9.842343e-01   p_joint 4.407143e-03

Joint ci ratio: 6.996855e-02	ci left: 4.247368e-03	ci right 4.556697e-03	k: 3124	n:710000
Cons ci ratio: 5.888293e-04	ci left: 9.839414e-01	ci right 9.845223e-01	k: 698806	n:710000
KS ci ratio: 1.221728e-01	ci left: 1.359413e-03	ci right 1.537652e-03	k: 1027	n:710000
ZMYND19   710000 perm   317 sec   (2239 perm/sec)   p_kst 1.446479e-03   p_cons 9.842338e-01   p_joint 4.400000e-03

Joint ci ratio: 6.959149e-02	ci left: 4.234774e-03	ci right 4.541457e-03	k: 3158	n:720000
Cons ci ratio: 5.846036e-04	ci left: 9.839499e-01	ci right 9.845267e-01	k: 708653	n:720000
KS ci ratio: 1.214077e-01	ci left: 1.358038e-03	ci right 1.534901e-03	k: 1040	n:720000
ZMYND19   720000 perm   324 sec   (2219 perm/sec)   p_kst 1.444444e-03   p_cons 9.842403e-01   p_joint 4.386111e-03

Joint ci ratio: 6.910100e-02	ci left: 4.237338e-03	ci right 4.541958e-03	k: 3203	n:730000
Cons ci ratio: 5.806981e-04	ci left: 9.839459e-01	ci right 9.845188e-01	k: 718491	n:730000
KS ci ratio: 1.200311e-01	ci left: 1.371319e-03	ci right 1.547744e-03	k: 1064	n:730000
ZMYND19   730000 perm   332 sec   (2200 perm/sec)   p_kst 1.457534e-03   p_cons 9.842342e-01   p_joint 4.387671e-03

Joint ci ratio: 4.297184e-02	ci left: 1.088125e-02	ci right 1.136043e-02	k: 8228	n:740000
Cons ci ratio: 5.767694e-04	ci left: 9.839474e-01	ci right 9.845164e-01	k: 728333	n:740000
KS ci ratio: 1.187550e-01	ci left: 1.382941e-03	ci right 1.558837e-03	k: 1087	n:740000
ZMYND19   740000 perm   339 sec   (2181 perm/sec)   p_kst 1.468919e-03   p_cons 9.842338e-01   p_joint 1.111892e-02

Joint ci ratio: 4.271342e-02	ci left: 1.086807e-02	ci right 1.134372e-02	k: 8328	n:750000
Cons ci ratio: 5.737065e-04	ci left: 9.839058e-01	ci right 9.844718e-01	k: 738143	n:750000
KS ci ratio: 1.182673e-01	ci left: 1.376146e-03	ci right 1.550408e-03	k: 1096	n:750000
ZMYND19   750000 perm   347 sec   (2163 perm/sec)   p_kst 1.461333e-03   p_cons 9.841907e-01   p_joint 1.110400e-02

Joint ci ratio: 4.245706e-02	ci left: 1.085655e-02	ci right 1.132877e-02	k: 8429	n:760000
Cons ci ratio: 5.696519e-04	ci left: 9.839224e-01	ci right 9.844844e-01	k: 747996	n:760000
KS ci ratio: 1.174140e-01	ci left: 1.378471e-03	ci right 1.551681e-03	k: 1112	n:760000
ZMYND19   760000 perm   354 sec   (2145 perm/sec)   p_kst 1.463158e-03   p_cons 9.842053e-01   p_joint 1.109079e-02

Joint ci ratio: 4.216031e-02	ci left: 1.086846e-02	ci right 1.133782e-02	k: 8548	n:770000
Cons ci ratio: 5.664143e-04	ci left: 9.838980e-01	ci right 9.844568e-01	k: 757818	n:770000
KS ci ratio: 1.168904e-01	ci left: 1.373175e-03	ci right 1.544897e-03	k: 1122	n:770000
ZMYND19   770000 perm   362 sec   (2128 perm/sec)   p_kst 1.457143e-03   p_cons 9.841792e-01   p_joint 1.110130e-02

Joint ci ratio: 4.191862e-02	ci left: 1.085471e-02	ci right 1.132073e-02	k: 8647	n:780000
Cons ci ratio: 5.634844e-04	ci left: 9.838600e-01	ci right 9.844158e-01	k: 767629	n:780000
KS ci ratio: 1.160664e-01	ci left: 1.375485e-03	ci right 1.546200e-03	k: 1138	n:780000
ZMYND19   780000 perm   370 sec   (2109 perm/sec)   p_kst 1.458974e-03   p_cons 9.841397e-01   p_joint 1.108590e-02

Joint ci ratio: 3.817373e-02	ci left: 1.292064e-02	ci right 1.342471e-02	k: 10405	n:790000
Cons ci ratio: 5.600970e-04	ci left: 9.838511e-01	ci right 9.844036e-01	k: 777462	n:790000
KS ci ratio: 1.149609e-01	ci left: 1.385118e-03	ci right 1.555280e-03	k: 1160	n:790000
ZMYND19   790000 perm   378 sec   (2093 perm/sec)   p_kst 1.468354e-03   p_cons 9.841291e-01   p_joint 1.317089e-02

Joint ci ratio: 3.735443e-02	ci left: 1.332504e-02	ci right 1.383349e-02	k: 10862	n:800000
Cons ci ratio: 5.565471e-04	ci left: 9.838550e-01	ci right 9.844040e-01	k: 787305	n:800000
KS ci ratio: 1.140313e-01	ci left: 1.390874e-03	ci right 1.560269e-03	k: 1179	n:800000
ZMYND19   800000 perm   385 sec   (2076 perm/sec)   p_kst 1.473750e-03   p_cons 9.841313e-01   p_joint 1.357750e-02

Joint ci ratio: 3.709713e-02	ci left: 1.334522e-02	ci right 1.385086e-02	k: 11013	n:810000
Cons ci ratio: 5.530420e-04	ci left: 9.838601e-01	ci right 9.844056e-01	k: 797149	n:810000
KS ci ratio: 1.129354e-01	ci left: 1.401292e-03	ci right 1.570206e-03	k: 1202	n:810000
ZMYND19   810000 perm   393 sec   (2060 perm/sec)   p_kst 1.483951e-03   p_cons 9.841346e-01   p_joint 1.359630e-02

Joint ci ratio: 3.744638e-02	ci left: 1.294079e-02	ci right 1.343582e-02	k: 10813	n:820000
Cons ci ratio: 5.494949e-04	ci left: 9.838712e-01	ci right 9.844132e-01	k: 806998	n:820000
KS ci ratio: 1.123765e-01	ci left: 1.398425e-03	ci right 1.566104e-03	k: 1214	n:820000
ZMYND19   820000 perm   401 sec   (2044 perm/sec)   p_kst 1.480488e-03   p_cons 9.841439e-01   p_joint 1.318659e-02

Joint ci ratio: 3.700129e-02	ci left: 1.309524e-02	ci right 1.359010e-02	k: 11073	n:830000
Cons ci ratio: 5.460993e-04	ci left: 9.838772e-01	ci right 9.844158e-01	k: 816843	n:830000
KS ci ratio: 1.116892e-01	ci left: 1.399142e-03	ci right 1.565814e-03	k: 1229	n:830000
ZMYND19   830000 perm   409 sec   (2028 perm/sec)   p_kst 1.480723e-03   p_cons 9.841482e-01   p_joint 1.334096e-02

Joint ci ratio: 3.678774e-02	ci left: 1.309150e-02	ci right 1.358330e-02	k: 11202	n:840000
Cons ci ratio: 5.427659e-04	ci left: 9.838830e-01	ci right 9.844184e-01	k: 826688	n:840000
KS ci ratio: 1.109251e-01	ci left: 1.402161e-03	ci right 1.567974e-03	k: 1246	n:840000
ZMYND19   840000 perm   418 sec   (2012 perm/sec)   p_kst 1.483333e-03   p_cons 9.841524e-01   p_joint 1.333571e-02

Joint ci ratio: 3.678401e-02	ci left: 1.294212e-02	ci right 1.342826e-02	k: 11206	n:850000
Cons ci ratio: 5.396148e-04	ci left: 9.838817e-01	ci right 9.844139e-01	k: 836527	n:850000
KS ci ratio: 1.102639e-01	ci left: 1.402824e-03	ci right 1.567663e-03	k: 1261	n:850000
ZMYND19   850000 perm   426 sec   (1997 perm/sec)   p_kst 1.483529e-03   p_cons 9.841494e-01   p_joint 1.318353e-02

Joint ci ratio: 3.639082e-02	ci left: 1.307047e-02	ci right 1.355607e-02	k: 11448	n:860000
Cons ci ratio: 5.363980e-04	ci left: 9.838873e-01	ci right 9.844164e-01	k: 846372	n:860000
KS ci ratio: 1.100903e-01	ci left: 1.391034e-03	ci right 1.554214e-03	k: 1265	n:860000
ZMYND19   860000 perm   434 sec   (1983 perm/sec)   p_kst 1.470930e-03   p_cons 9.841535e-01   p_joint 1.331163e-02

Joint ci ratio: 3.620028e-02	ci left: 1.305805e-02	ci right 1.354060e-02	k: 11569	n:870000
Cons ci ratio: 5.332774e-04	ci left: 9.838906e-01	ci right 9.844165e-01	k: 856215	n:870000
KS ci ratio: 1.095295e-01	ci left: 1.389577e-03	ci right 1.551702e-03	k: 1278	n:870000
ZMYND19   870000 perm   442 sec   (1968 perm/sec)   p_kst 1.468966e-03   p_cons 9.841552e-01   p_joint 1.329770e-02

Joint ci ratio: 3.600179e-02	ci left: 1.305381e-02	ci right 1.353350e-02	k: 11697	n:880000
Cons ci ratio: 5.305582e-04	ci left: 9.838731e-01	ci right 9.843964e-01	k: 866040	n:880000
KS ci ratio: 1.088507e-01	ci left: 1.391472e-03	ci right 1.552747e-03	k: 1294	n:880000
ZMYND19   880000 perm   451 sec   (1953 perm/sec)   p_kst 1.470455e-03   p_cons 9.841364e-01   p_joint 1.329205e-02

Joint ci ratio: 3.845554e-02	ci left: 1.131847e-02	ci right 1.176337e-02	k: 10270	n:890000
Cons ci ratio: 5.276517e-04	ci left: 9.838697e-01	ci right 9.843901e-01	k: 875877	n:890000
KS ci ratio: 1.081843e-01	ci left: 1.393327e-03	ci right 1.553766e-03	k: 1310	n:890000
ZMYND19   890000 perm   459 sec   (1939 perm/sec)   p_kst 1.471910e-03   p_cons 9.841315e-01   p_joint 1.153933e-02

Joint ci ratio: 3.821972e-02	ci left: 1.133247e-02	ci right 1.177513e-02	k: 10397	n:900000
Cons ci ratio: 5.247365e-04	ci left: 9.838697e-01	ci right 9.843872e-01	k: 885717	n:900000
KS ci ratio: 1.075301e-01	ci left: 1.395144e-03	ci right 1.554759e-03	k: 1326	n:900000
ZMYND19   900000 perm   468 sec   (1924 perm/sec)   p_kst 1.473333e-03   p_cons 9.841300e-01   p_joint 1.155222e-02

Joint ci ratio: 4.112711e-02	ci left: 9.681280e-03	ci right 1.008888e-02	k: 8994	n:910000
Cons ci ratio: 5.225478e-04	ci left: 9.838287e-01	ci right 9.843440e-01	k: 895520	n:910000
KS ci ratio: 1.072078e-01	ci left: 1.388368e-03	ci right 1.546701e-03	k: 1334	n:910000
ZMYND19   910000 perm   476 sec   (1910 perm/sec)   p_kst 1.465934e-03   p_cons 9.840879e-01   p_joint 9.883516e-03

Joint ci ratio: 3.764301e-02	ci left: 1.143065e-02	ci right 1.187026e-02	k: 10717	n:920000
Cons ci ratio: 5.199682e-04	ci left: 9.838138e-01	ci right 9.843266e-01	k: 905346	n:920000
KS ci ratio: 1.063741e-01	ci left: 1.395493e-03	ci right 1.553324e-03	k: 1355	n:920000
ZMYND19   920000 perm   485 sec   (1895 perm/sec)   p_kst 1.472826e-03   p_cons 9.840717e-01   p_joint 1.164891e-02

Joint ci ratio: 4.067062e-02	ci left: 9.689129e-03	ci right 1.009243e-02	k: 9197	n:930000
Cons ci ratio: 5.173019e-04	ci left: 9.838069e-01	ci right 9.843170e-01	k: 915179	n:930000
KS ci ratio: 1.059842e-01	ci left: 1.390955e-03	ci right 1.547660e-03	k: 1365	n:930000
ZMYND19   930000 perm   494 sec   (1882 perm/sec)   p_kst 1.467742e-03   p_cons 9.840634e-01   p_joint 9.889247e-03

Joint ci ratio: 4.046229e-02	ci left: 9.686091e-03	ci right 1.008715e-02	k: 9292	n:940000
Cons ci ratio: 5.143793e-04	ci left: 9.838183e-01	ci right 9.843255e-01	k: 925029	n:940000
KS ci ratio: 1.052545e-01	ci left: 1.395837e-03	ci right 1.551942e-03	k: 1384	n:940000
ZMYND19   940000 perm   503 sec   (1869 perm/sec)   p_kst 1.472340e-03   p_cons 9.840734e-01   p_joint 9.885106e-03

Joint ci ratio: 4.021604e-02	ci left: 9.702924e-03	ci right 1.010218e-02	k: 9406	n:950000
Cons ci ratio: 5.120380e-04	ci left: 9.837966e-01	ci right 9.843015e-01	k: 934848	n:950000
KS ci ratio: 1.046143e-01	ci left: 1.398569e-03	ci right 1.553970e-03	k: 1401	n:950000
ZMYND19   950000 perm   512 sec   (1856 perm/sec)   p_kst 1.474737e-03   p_cons 9.840505e-01   p_joint 9.901053e-03

Joint ci ratio: 4.001033e-02	ci left: 9.701880e-03	ci right 1.009900e-02	k: 9503	n:960000
Cons ci ratio: 5.090513e-04	ci left: 9.838173e-01	ci right 9.843193e-01	k: 944707	n:960000
KS ci ratio: 1.040224e-01	ci left: 1.400232e-03	ci right 1.554884e-03	k: 1417	n:960000
ZMYND19   960000 perm   521 sec   (1843 perm/sec)   p_kst 1.476042e-03   p_cons 9.840698e-01   p_joint 9.898958e-03

Joint ci ratio: 3.838915e-02	ci left: 1.043085e-02	ci right 1.084013e-02	k: 10315	n:970000
Cons ci ratio: 5.060988e-04	ci left: 9.838387e-01	ci right 9.843378e-01	k: 954567	n:970000
KS ci ratio: 1.034765e-01	ci left: 1.400860e-03	ci right 1.554719e-03	k: 1432	n:970000
ZMYND19   970000 perm   530 sec   (1830 perm/sec)   p_kst 1.476289e-03   p_cons 9.840897e-01   p_joint 1.063402e-02

Joint ci ratio: 3.402608e-02	ci left: 1.313483e-02	ci right 1.359050e-02	k: 13094	n:980000
Cons ci ratio: 5.035575e-04	ci left: 9.838370e-01	ci right 9.843336e-01	k: 964405	n:980000
KS ci ratio: 1.027616e-01	ci left: 1.406447e-03	ci right 1.559789e-03	k: 1452	n:980000
ZMYND19   980000 perm   539 sec   (1817 perm/sec)   p_kst 1.481633e-03   p_cons 9.840867e-01   p_joint 1.336122e-02

Joint ci ratio: 3.382093e-02	ci left: 1.316141e-02	ci right 1.361519e-02	k: 13253	n:990000
Cons ci ratio: 5.008439e-04	ci left: 9.838486e-01	ci right 9.843425e-01	k: 974256	n:990000
KS ci ratio: 1.021656e-01	ci left: 1.408972e-03	ci right 1.561645e-03	k: 1469	n:990000
ZMYND19   990000 perm   549 sec   (1804 perm/sec)   p_kst 1.483838e-03   p_cons 9.840970e-01   p_joint 1.338687e-02

Joint ci ratio: 3.310415e-02	ci left: 1.359904e-02	ci right 1.405778e-02	k: 13827	n:1000000
Cons ci ratio: 4.983805e-04	ci left: 9.838469e-01	ci right 9.843383e-01	k: 984094	n:1000000
KS ci ratio: 1.015798e-01	ci left: 1.411450e-03	ci right 1.563461e-03	k: 1486	n:1000000
ZMYND19   1000000 perm   558 sec   (1791 perm/sec)   p_kst 1.486000e-03   p_cons 9.840940e-01   p_joint 1.382700e-02

Joint ci ratio: 3.292944e-02	ci left: 1.360874e-02	ci right 1.406534e-02	k: 13974	n:1010000
Cons ci ratio: 4.960158e-04	ci left: 9.838412e-01	ci right 9.843303e-01	k: 993928	n:1010000
KS ci ratio: 1.010713e-01	ci left: 1.411950e-03	ci right 1.563209e-03	k: 1501	n:1010000
ZMYND19   1010000 perm   568 sec   (1779 perm/sec)   p_kst 1.486139e-03   p_cons 9.840871e-01   p_joint 1.383564e-02

Joint ci ratio: 3.318054e-02	ci left: 1.327499e-02	ci right 1.372386e-02	k: 13768	n:1020000
Cons ci ratio: 4.933908e-04	ci left: 9.838544e-01	ci right 9.843409e-01	k: 1003781	n:1020000
KS ci ratio: 1.005371e-01	ci left: 1.413398e-03	ci right 1.563965e-03	k: 1517	n:1020000
ZMYND19   1020000 perm   577 sec   (1767 perm/sec)   p_kst 1.487255e-03   p_cons 9.840990e-01   p_joint 1.349804e-02

Joint ci ratio: 3.256502e-02	ci left: 1.364685e-02	ci right 1.409957e-02	k: 14288	n:1030000
Cons ci ratio: 4.910048e-04	ci left: 9.838546e-01	ci right 9.843388e-01	k: 1013621	n:1030000
KS ci ratio: 1.000114e-01	ci left: 1.414820e-03	ci right 1.564705e-03	k: 1533	n:1030000
ZMYND19   1030000 perm   587 sec   (1756 perm/sec)   p_kst 1.488350e-03   p_cons 9.840981e-01   p_joint 1.387184e-02

Joint ci ratio: 3.241233e-02	ci left: 1.364439e-02	ci right 1.409486e-02	k: 14423	n:1040000
Cons ci ratio: 4.884579e-04	ci left: 9.838674e-01	ci right 9.843491e-01	k: 1023474	n:1040000
KS ci ratio: 9.968724e-02	ci left: 1.410591e-03	ci right 1.559515e-03	k: 1543	n:1040000
ZMYND19   1040000 perm   597 sec   (1743 perm/sec)   p_kst 1.483654e-03   p_cons 9.841096e-01   p_joint 1.386827e-02

Outputting figure to mutsig2_images.part000000000195/ZMYND19.2_708_1040000_0.0014837_0.98411_0.013868.png
                gene_name: ZMYND19
               theta_stop: 0.100 
                    nperm: 1040000 
                     p_ks: 0.0015 
        ci_ks_bounds_left: 0.0014 
       ci_ks_bounds_right: 0.0016 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.014 
     ci_joint_bounds_left: 0.014 
    ci_joint_bounds_right: 0.014 

Current progress: 86 percent done.
ZNF136
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.137588e-02	ci left: 7.624337e-01	ci right 7.790083e-01	k: 7708	n:10000
Cons ci ratio: 1.849152e-02	ci left: 8.102954e-01	ci right 8.255190e-01	k: 8180	n:10000
KS ci ratio: 4.646584e-02	ci left: 4.060162e-01	ci right 4.254329e-01	k: 4157	n:10000
ZNF136   10000 perm   2 sec   (6193 perm/sec)   p_kst 4.157000e-01   p_cons 8.180000e-01   p_joint 7.708000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF136.2_1639_10000_0.4157_0.818_0.7708.png
                gene_name: ZNF136
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 87 percent done.
ZNF138
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.429909e-02	ci left: 7.135091e-01	ci right 7.311612e-01	k: 7224	n:10000
Cons ci ratio: 4.872833e-02	ci left: 3.832104e-01	ci right 4.024520e-01	k: 3928	n:10000
KS ci ratio: 4.298147e-02	ci left: 4.442063e-01	ci right 4.638205e-01	k: 4540	n:10000
ZNF138   10000 perm   2 sec   (6526 perm/sec)   p_kst 4.540000e-01   p_cons 3.928000e-01   p_joint 7.224000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF138.2_1117_10000_0.454_0.3928_0.7224.png
                gene_name: ZNF138
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 88 percent done.
ZNF146
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.296871e-02	ci left: 8.953894e-01	ci right 9.071756e-01	k: 9014	n:10000
Cons ci ratio: 2.396621e-02	ci left: 7.190618e-01	ci right 7.366053e-01	k: 7279	n:10000
KS ci ratio: 1.757859e-02	ci left: 8.251362e-01	ci right 8.398695e-01	k: 8326	n:10000
ZNF146   10000 perm   2 sec   (6631 perm/sec)   p_kst 8.326000e-01   p_cons 7.279000e-01   p_joint 9.014000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF146.2_883_10000_0.8326_0.7279_0.9014.png
                gene_name: ZNF146
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.83 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.90 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.91 

Current progress: 89 percent done.
ZNF157
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.839296e-02	ci left: 3.864955e-01	ci right 4.057650e-01	k: 3961	n:10000
Cons ci ratio: 5.379860e-02	ci left: 3.373679e-01	ci right 3.561214e-01	k: 3467	n:10000
KS ci ratio: 4.249928e-02	ci left: 4.497952e-01	ci right 4.694284e-01	k: 4596	n:10000
ZNF157   10000 perm   2 sec   (6270 perm/sec)   p_kst 4.596000e-01   p_cons 3.467000e-01   p_joint 3.961000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF157.2_1537_10000_0.4596_0.3467_0.3961.png
                gene_name: ZNF157
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 91 percent done.
ZNF174
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.080128e-02	ci left: 9.243065e-01	ci right 9.344416e-01	k: 9295	n:10000
Cons ci ratio: 2.978760e-02	ci left: 6.243702e-01	ci right 6.433517e-01	k: 6339	n:10000
KS ci ratio: 4.764275e-02	ci left: 3.939633e-01	ci right 4.132929e-01	k: 4036	n:10000
ZNF174   10000 perm   2 sec   (6633 perm/sec)   p_kst 4.036000e-01   p_cons 6.339000e-01   p_joint 9.295000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF174.2_1320_10000_0.4036_0.6339_0.9295.png
                gene_name: ZNF174
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 92 percent done.
ZNF187
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.896315e-01	ci left: 3.113627e-03	ci right 5.787748e-03	k: 43	n:10000
Cons ci ratio: 2.801592e-01	ci left: 1.650803e-02	ci right 2.197711e-02	k: 191	n:10000
KS ci ratio: 1.406212e-01	ci left: 6.700893e-02	ci right 7.724202e-02	k: 720	n:10000
ZNF187   10000 perm   2 sec   (6278 perm/sec)   p_kst 7.200000e-02   p_cons 1.910000e-02   p_joint 4.300000e-03

Joint ci ratio: 2.771931e-01	ci left: 8.527942e-03	ci right 1.131731e-02	k: 197	n:20000
Cons ci ratio: 1.960353e-01	ci left: 1.767633e-02	ci right 2.156510e-02	k: 391	n:20000
KS ci ratio: 1.013035e-01	ci left: 6.611102e-02	ci right 7.321471e-02	k: 1392	n:20000
ZNF187   20000 perm   4 sec   (5551 perm/sec)   p_kst 6.960000e-02   p_cons 1.955000e-02   p_joint 9.850000e-03

Joint ci ratio: 2.762558e-01	ci left: 5.746141e-03	ci right 7.617986e-03	k: 199	n:30000
Cons ci ratio: 1.599248e-01	ci left: 1.806137e-02	ci right 2.123262e-02	k: 588	n:30000
KS ci ratio: 8.163826e-02	ci left: 6.844579e-02	ci right 7.430421e-02	k: 2140	n:30000
ZNF187   30000 perm   6 sec   (5276 perm/sec)   p_kst 7.133333e-02   p_cons 1.960000e-02   p_joint 6.633333e-03

Joint ci ratio: 2.512206e-01	ci left: 5.290163e-03	ci right 6.832869e-03	k: 241	n:40000
Cons ci ratio: 1.379925e-01	ci left: 1.840890e-02	ci right 2.116144e-02	k: 790	n:40000
KS ci ratio: 7.041812e-02	ci left: 6.936254e-02	ci right 7.444982e-02	k: 2875	n:40000
ZNF187   40000 perm   8 sec   (5102 perm/sec)   p_kst 7.187500e-02   p_cons 1.975000e-02   p_joint 6.025000e-03

Joint ci ratio: 2.578794e-01	ci left: 4.007083e-03	ci right 5.211545e-03	k: 229	n:50000
Cons ci ratio: 1.245701e-01	ci left: 1.820901e-02	ci right 2.064724e-02	k: 970	n:50000
KS ci ratio: 6.340306e-02	ci left: 6.876382e-02	ci right 7.328613e-02	k: 3550	n:50000
ZNF187   50000 perm   10 sec   (4965 perm/sec)   p_kst 7.100000e-02   p_cons 1.940000e-02   p_joint 4.580000e-03

Joint ci ratio: 2.407260e-01	ci left: 3.870500e-03	ci right 4.944972e-03	k: 263	n:60000
Cons ci ratio: 1.138762e-01	ci left: 1.826274e-02	ci right 2.048410e-02	k: 1161	n:60000
KS ci ratio: 5.775643e-02	ci left: 6.923700e-02	ci right 7.337125e-02	k: 4277	n:60000
ZNF187   60000 perm   12 sec   (4841 perm/sec)   p_kst 7.128333e-02   p_cons 1.935000e-02   p_joint 4.383333e-03

Joint ci ratio: 2.052110e-01	ci left: 4.653535e-03	ci right 5.730965e-03	k: 362	n:70000
Cons ci ratio: 1.047092e-01	ci left: 1.859982e-02	ci right 2.066884e-02	k: 1373	n:70000
KS ci ratio: 5.362266e-02	ci left: 6.902347e-02	ci right 7.284076e-02	k: 4964	n:70000
ZNF187   70000 perm   15 sec   (4735 perm/sec)   p_kst 7.091429e-02   p_cons 1.961429e-02   p_joint 5.171429e-03

Joint ci ratio: 2.011449e-01	ci left: 4.249713e-03	ci right 5.211746e-03	k: 377	n:80000
Cons ci ratio: 9.754458e-02	ci left: 1.882142e-02	ci right 2.076362e-02	k: 1582	n:80000
KS ci ratio: 5.025620e-02	ci left: 6.889608e-02	ci right 7.246013e-02	k: 5653	n:80000
ZNF187   80000 perm   17 sec   (4644 perm/sec)   p_kst 7.066250e-02   p_cons 1.977500e-02   p_joint 4.712500e-03

Joint ci ratio: 1.821034e-01	ci left: 4.655688e-03	ci right 5.598865e-03	k: 460	n:90000
Cons ci ratio: 9.201540e-02	ci left: 1.885635e-02	ci right 2.068590e-02	k: 1778	n:90000
KS ci ratio: 4.713827e-02	ci left: 6.967108e-02	ci right 7.304550e-02	k: 6421	n:90000
ZNF187   90000 perm   20 sec   (4559 perm/sec)   p_kst 7.134444e-02   p_cons 1.975556e-02   p_joint 5.111111e-03

Joint ci ratio: 1.745176e-01	ci left: 4.581809e-03	ci right 5.467275e-03	k: 501	n:100000
Cons ci ratio: 8.742144e-02	ci left: 1.884764e-02	ci right 2.058038e-02	k: 1970	n:100000
KS ci ratio: 4.464375e-02	ci left: 6.997977e-02	ci right 7.318513e-02	k: 7157	n:100000
ZNF187   100000 perm   22 sec   (4480 perm/sec)   p_kst 7.157000e-02   p_cons 1.970000e-02   p_joint 5.010000e-03

Joint ci ratio: 1.665781e-01	ci left: 4.591730e-03	ci right 5.434693e-03	k: 550	n:110000
Cons ci ratio: 8.392950e-02	ci left: 1.862868e-02	ci right 2.026952e-02	k: 2138	n:110000
KS ci ratio: 4.260055e-02	ci left: 6.994813e-02	ci right 7.300179e-02	k: 7861	n:110000
ZNF187   110000 perm   25 sec   (4397 perm/sec)   p_kst 7.146364e-02   p_cons 1.943636e-02   p_joint 5.000000e-03

Joint ci ratio: 1.661593e-01	ci left: 4.232979e-03	ci right 5.007927e-03	k: 553	n:120000
Cons ci ratio: 8.013699e-02	ci left: 1.876596e-02	ci right 2.034071e-02	k: 2345	n:120000
KS ci ratio: 4.073766e-02	ci left: 7.017221e-02	ci right 7.309853e-02	k: 8595	n:120000
ZNF187   120000 perm   28 sec   (4319 perm/sec)   p_kst 7.162500e-02   p_cons 1.954167e-02   p_joint 4.608333e-03

Joint ci ratio: 1.624050e-01	ci left: 4.099119e-03	ci right 4.830948e-03	k: 579	n:130000
Cons ci ratio: 7.687754e-02	ci left: 1.885334e-02	ci right 2.036819e-02	k: 2548	n:130000
KS ci ratio: 3.913798e-02	ci left: 7.023469e-02	ci right 7.304600e-02	k: 9312	n:130000
ZNF187   130000 perm   31 sec   (4245 perm/sec)   p_kst 7.163077e-02   p_cons 1.960000e-02   p_joint 4.453846e-03

Joint ci ratio: 1.611801e-01	ci left: 3.867970e-03	ci right 4.552815e-03	k: 588	n:140000
Cons ci ratio: 7.395856e-02	ci left: 1.894338e-02	ci right 2.040518e-02	k: 2753	n:140000
KS ci ratio: 3.778412e-02	ci left: 7.004235e-02	ci right 7.274686e-02	k: 9994	n:140000
ZNF187   140000 perm   34 sec   (4178 perm/sec)   p_kst 7.138571e-02   p_cons 1.966429e-02   p_joint 4.200000e-03

Joint ci ratio: 1.560967e-01	ci left: 3.859783e-03	ci right 4.519608e-03	k: 627	n:150000
Cons ci ratio: 7.150906e-02	ci left: 1.893720e-02	ci right 2.034812e-02	k: 2945	n:150000
KS ci ratio: 3.646066e-02	ci left: 7.024071e-02	ci right 7.285588e-02	k: 10731	n:150000
ZNF187   150000 perm   36 sec   (4118 perm/sec)   p_kst 7.154000e-02   p_cons 1.963333e-02   p_joint 4.180000e-03

Joint ci ratio: 1.433792e-01	ci left: 4.316499e-03	ci right 4.989144e-03	k: 743	n:160000
Cons ci ratio: 6.905256e-02	ci left: 1.906153e-02	ci right 2.043096e-02	k: 3158	n:160000
KS ci ratio: 3.533193e-02	ci left: 7.017396e-02	ci right 7.270410e-02	k: 11429	n:160000
ZNF187   160000 perm   39 sec   (4056 perm/sec)   p_kst 7.143125e-02   p_cons 1.973750e-02   p_joint 4.643750e-03

Joint ci ratio: 1.385272e-01	ci left: 4.363366e-03	ci right 5.018407e-03	k: 796	n:170000
Cons ci ratio: 6.712804e-02	ci left: 1.900416e-02	ci right 2.032994e-02	k: 3342	n:170000
KS ci ratio: 3.429431e-02	ci left: 7.014534e-02	ci right 7.259871e-02	k: 12132	n:170000
ZNF187   170000 perm   43 sec   (3998 perm/sec)   p_kst 7.136471e-02   p_cons 1.965882e-02   p_joint 4.682353e-03

Joint ci ratio: 1.359154e-01	ci left: 4.287255e-03	ci right 4.917752e-03	k: 827	n:180000
Cons ci ratio: 6.510223e-02	ci left: 1.910125e-02	ci right 2.039206e-02	k: 3553	n:180000
KS ci ratio: 3.329559e-02	ci left: 7.030832e-02	ci right 7.269439e-02	k: 12869	n:180000
ZNF187   180000 perm   46 sec   (3938 perm/sec)   p_kst 7.149444e-02   p_cons 1.973889e-02   p_joint 4.594444e-03

Joint ci ratio: 1.299221e-01	ci left: 4.458516e-03	ci right 5.083057e-03	k: 905	n:190000
Cons ci ratio: 6.336108e-02	ci left: 1.912129e-02	ci right 2.037763e-02	k: 3751	n:190000
KS ci ratio: 3.242555e-02	ci left: 7.026701e-02	ci right 7.258820e-02	k: 13570	n:190000
ZNF187   190000 perm   49 sec   (3879 perm/sec)   p_kst 7.142105e-02   p_cons 1.974211e-02   p_joint 4.763158e-03

Joint ci ratio: 1.262792e-01	ci left: 4.492103e-03	ci right 5.102386e-03	k: 958	n:200000
Cons ci ratio: 6.178447e-02	ci left: 1.912005e-02	ci right 2.034393e-02	k: 3945	n:200000
KS ci ratio: 3.161437e-02	ci left: 7.025538e-02	ci right 7.251707e-02	k: 14276	n:200000
ZNF187   200000 perm   52 sec   (3817 perm/sec)   p_kst 7.138000e-02   p_cons 1.972500e-02   p_joint 4.790000e-03

Joint ci ratio: 1.283259e-01	ci left: 4.139837e-03	ci right 4.712070e-03	k: 928	n:210000
Cons ci ratio: 6.023840e-02	ci left: 1.917088e-02	ci right 2.036623e-02	k: 4150	n:210000
KS ci ratio: 3.081137e-02	ci left: 7.045827e-02	ci right 7.266786e-02	k: 15027	n:210000
ZNF187   210000 perm   56 sec   (3761 perm/sec)   p_kst 7.155714e-02   p_cons 1.976190e-02   p_joint 4.419048e-03

Joint ci ratio: 1.254557e-01	ci left: 4.140913e-03	ci right 4.699540e-03	k: 971	n:220000
Cons ci ratio: 5.885113e-02	ci left: 1.918608e-02	ci right 2.035389e-02	k: 4348	n:220000
KS ci ratio: 3.012939e-02	ci left: 7.036803e-02	ci right 7.252509e-02	k: 15717	n:220000
ZNF187   220000 perm   59 sec   (3702 perm/sec)   p_kst 7.144091e-02   p_cons 1.976364e-02   p_joint 4.413636e-03

Joint ci ratio: 1.171624e-01	ci left: 4.559606e-03	ci right 5.131243e-03	k: 1113	n:230000
Cons ci ratio: 5.749747e-02	ci left: 1.923883e-02	ci right 2.038202e-02	k: 4555	n:230000
KS ci ratio: 2.944249e-02	ci left: 7.050205e-02	ci right 7.261311e-02	k: 16457	n:230000
ZNF187   230000 perm   63 sec   (3645 perm/sec)   p_kst 7.155217e-02   p_cons 1.980435e-02   p_joint 4.839130e-03

Joint ci ratio: 1.148164e-01	ci left: 4.555728e-03	ci right 5.114667e-03	k: 1159	n:240000
Cons ci ratio: 5.627531e-02	ci left: 1.925869e-02	ci right 2.037795e-02	k: 4755	n:240000
KS ci ratio: 2.880232e-02	ci left: 7.061713e-02	ci right 7.268490e-02	k: 17195	n:240000
ZNF187   240000 perm   67 sec   (3589 perm/sec)   p_kst 7.164583e-02   p_cons 1.981250e-02   p_joint 4.829167e-03

Joint ci ratio: 1.127941e-01	ci left: 4.536714e-03	ci right 5.082864e-03	k: 1201	n:250000
Cons ci ratio: 5.519614e-02	ci left: 1.922986e-02	ci right 2.032532e-02	k: 4943	n:250000
KS ci ratio: 2.824886e-02	ci left: 7.050489e-02	ci right 7.252906e-02	k: 17878	n:250000
ZNF187   250000 perm   71 sec   (3537 perm/sec)   p_kst 7.151200e-02   p_cons 1.977200e-02   p_joint 4.804000e-03

Joint ci ratio: 1.108750e-01	ci left: 4.519242e-03	ci right 5.053427e-03	k: 1243	n:260000
Cons ci ratio: 5.416598e-02	ci left: 1.921102e-02	ci right 2.028434e-02	k: 5133	n:260000
KS ci ratio: 2.768038e-02	ci left: 7.061947e-02	ci right 7.260547e-02	k: 18618	n:260000
ZNF187   260000 perm   75 sec   (3485 perm/sec)   p_kst 7.160769e-02   p_cons 1.974231e-02   p_joint 4.780769e-03

Joint ci ratio: 1.118372e-01	ci left: 4.276221e-03	ci right 4.786356e-03	k: 1222	n:270000
Cons ci ratio: 5.307966e-02	ci left: 1.927417e-02	ci right 2.032876e-02	k: 5345	n:270000
KS ci ratio: 2.716833e-02	ci left: 7.061185e-02	ci right 7.256032e-02	k: 19327	n:270000
ZNF187   270000 perm   79 sec   (3436 perm/sec)   p_kst 7.158148e-02   p_cons 1.979630e-02   p_joint 4.525926e-03

Joint ci ratio: 1.073947e-01	ci left: 4.481299e-03	ci right 4.993321e-03	k: 1325	n:280000
Cons ci ratio: 5.204663e-02	ci left: 1.934007e-02	ci right 2.037705e-02	k: 5559	n:280000
KS ci ratio: 2.668584e-02	ci left: 7.059443e-02	ci right 7.250730e-02	k: 20033	n:280000
ZNF187   280000 perm   83 sec   (3386 perm/sec)   p_kst 7.154643e-02   p_cons 1.985357e-02   p_joint 4.732143e-03

Joint ci ratio: 1.056954e-01	ci left: 4.471095e-03	ci right 4.973365e-03	k: 1368	n:290000
Cons ci ratio: 5.111683e-02	ci left: 1.936755e-02	ci right 2.038691e-02	k: 5763	n:290000
KS ci ratio: 2.621796e-02	ci left: 7.062992e-02	ci right 7.250969e-02	k: 20754	n:290000
ZNF187   290000 perm   87 sec   (3338 perm/sec)   p_kst 7.156552e-02   p_cons 1.987241e-02   p_joint 4.717241e-03

Joint ci ratio: 1.045966e-01	ci left: 4.416176e-03	ci right 4.906802e-03	k: 1397	n:300000
Cons ci ratio: 5.033851e-02	ci left: 1.931434e-02	ci right 2.031497e-02	k: 5943	n:300000
KS ci ratio: 2.580688e-02	ci left: 7.049432e-02	ci right 7.234063e-02	k: 21424	n:300000
ZNF187   300000 perm   91 sec   (3284 perm/sec)   p_kst 7.141333e-02   p_cons 1.981000e-02   p_joint 4.656667e-03

Joint ci ratio: 1.028099e-01	ci left: 4.427685e-03	ci right 4.910679e-03	k: 1446	n:310000
Cons ci ratio: 4.961122e-02	ci left: 1.925193e-02	ci right 2.023450e-02	k: 6119	n:310000
KS ci ratio: 2.537684e-02	ci left: 7.056332e-02	ci right 7.238019e-02	k: 22155	n:310000
ZNF187   310000 perm   96 sec   (3244 perm/sec)   p_kst 7.146774e-02   p_cons 1.973871e-02   p_joint 4.664516e-03

Joint ci ratio: 1.040527e-01	ci left: 4.185791e-03	ci right 4.648254e-03	k: 1412	n:320000
Cons ci ratio: 4.883943e-02	ci left: 1.925218e-02	ci right 2.021905e-02	k: 6314	n:320000
KS ci ratio: 2.495880e-02	ci left: 7.067484e-02	ci right 7.246417e-02	k: 22901	n:320000
ZNF187   320000 perm   100 sec   (3205 perm/sec)   p_kst 7.156562e-02   p_cons 1.973125e-02   p_joint 4.412500e-03

Joint ci ratio: 1.051489e-01	ci left: 3.973346e-03	ci right 4.417248e-03	k: 1383	n:330000
Cons ci ratio: 4.818192e-02	ci left: 1.918964e-02	ci right 2.014003e-02	k: 6488	n:330000
KS ci ratio: 2.456299e-02	ci left: 7.076779e-02	ci right 7.253066e-02	k: 23643	n:330000
ZNF187   330000 perm   104 sec   (3166 perm/sec)   p_kst 7.164545e-02   p_cons 1.966061e-02   p_joint 4.190909e-03

Joint ci ratio: 1.032260e-01	ci left: 4.005442e-03	ci right 4.444250e-03	k: 1435	n:340000
Cons ci ratio: 4.746314e-02	ci left: 1.920063e-02	ci right 2.013699e-02	k: 6686	n:340000
KS ci ratio: 2.420362e-02	ci left: 7.075603e-02	ci right 7.249246e-02	k: 24351	n:340000
ZNF187   340000 perm   109 sec   (3129 perm/sec)   p_kst 7.162059e-02   p_cons 1.966471e-02   p_joint 4.220588e-03

Joint ci ratio: 1.019916e-01	ci left: 3.988433e-03	ci right 4.419839e-03	k: 1470	n:350000
Cons ci ratio: 4.676867e-02	ci left: 1.921674e-02	ci right 2.013981e-02	k: 6886	n:350000
KS ci ratio: 2.388216e-02	ci left: 7.062010e-02	ci right 7.232986e-02	k: 25015	n:350000
ZNF187   350000 perm   113 sec   (3092 perm/sec)   p_kst 7.147143e-02   p_cons 1.967429e-02   p_joint 4.200000e-03

Joint ci ratio: 1.005327e-01	ci left: 3.994063e-03	ci right 4.419534e-03	k: 1513	n:360000
Cons ci ratio: 4.611709e-02	ci left: 1.922106e-02	ci right 2.013113e-02	k: 7082	n:360000
KS ci ratio: 2.355638e-02	ci left: 7.058580e-02	ci right 7.227110e-02	k: 25713	n:360000
ZNF187   360000 perm   118 sec   (3056 perm/sec)   p_kst 7.142500e-02   p_cons 1.967222e-02   p_joint 4.202778e-03

Joint ci ratio: 9.891161e-02	ci left: 4.017883e-03	ci right 4.438589e-03	k: 1563	n:370000
Cons ci ratio: 4.541252e-02	ci left: 1.929205e-02	ci right 2.019117e-02	k: 7303	n:370000
KS ci ratio: 2.324311e-02	ci left: 7.055620e-02	ci right 7.221809e-02	k: 26412	n:370000
ZNF187   370000 perm   122 sec   (3022 perm/sec)   p_kst 7.138378e-02   p_cons 1.973784e-02   p_joint 4.224324e-03

Outputting figure to mutsig2_images.part000000000195/ZNF187.2_1451_370000_0.071384_0.019738_0.0042243.png
                gene_name: ZNF187
               theta_stop: 0.099 
                    nperm: 370000 
                     p_ks: 0.071 
        ci_ks_bounds_left: 0.071 
       ci_ks_bounds_right: 0.072 
                   p_cons: 0.020 
      ci_cons_bounds_left: 0.019 
     ci_cons_bounds_right: 0.020 
                  p_joint: 0.0042 
     ci_joint_bounds_left: 0.0040 
    ci_joint_bounds_right: 0.0044 

Current progress: 93 percent done.
ZNF195
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.249207e-02	ci left: 5.829942e-01	ci right 6.023518e-01	k: 5927	n:10000
Cons ci ratio: 2.732877e-02	ci left: 6.636054e-01	ci right 6.820938e-01	k: 6729	n:10000
KS ci ratio: 6.633841e-02	ci left: 2.501382e-01	ci right 2.674026e-01	k: 2587	n:10000
ZNF195   10000 perm   2 sec   (6074 perm/sec)   p_kst 2.587000e-01   p_cons 6.729000e-01   p_joint 5.927000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF195.2_1914_10000_0.2587_0.6729_0.5927.png
                gene_name: ZNF195
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 95 percent done.
ZNF223
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.892293e-02	ci left: 3.813192e-01	ci right 4.005443e-01	k: 3909	n:10000
Cons ci ratio: 7.630513e-02	ci left: 2.007708e-01	ci right 2.167992e-01	k: 2087	n:10000
KS ci ratio: 3.958796e-02	ci left: 4.851533e-01	ci right 5.048496e-01	k: 4950	n:10000
ZNF223   10000 perm   2 sec   (6216 perm/sec)   p_kst 4.950000e-01   p_cons 2.087000e-01   p_joint 3.909000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF223.2_1465_10000_0.495_0.2087_0.3909.png
                gene_name: ZNF223
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 96 percent done.
ZNF224
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.120715e-01	ci left: 1.028590e-01	ci right 1.151698e-01	k: 1089	n:10000
Cons ci ratio: 1.354280e-01	ci left: 7.204238e-02	ci right 8.260541e-02	k: 772	n:10000
KS ci ratio: 2.920630e-02	ci left: 6.335189e-01	ci right 6.523977e-01	k: 6430	n:10000
ZNF224   10000 perm   2 sec   (6208 perm/sec)   p_kst 6.430000e-01   p_cons 7.720000e-02   p_joint 1.089000e-01

Joint ci ratio: 7.622039e-02	ci left: 1.123305e-01	ci right 1.212812e-01	k: 2335	n:20000
Cons ci ratio: 9.647600e-02	ci left: 7.255975e-02	ci right 7.996401e-02	k: 1524	n:20000
KS ci ratio: 2.044865e-02	ci left: 6.408830e-01	ci right 6.541741e-01	k: 12951	n:20000
ZNF224   20000 perm   4 sec   (5542 perm/sec)   p_kst 6.475500e-01   p_cons 7.620000e-02   p_joint 1.167500e-01

Outputting figure to mutsig2_images.part000000000195/ZNF224.2_2140_20000_0.64755_0.0762_0.11675.png
                gene_name: ZNF224
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.076 
      ci_cons_bounds_left: 0.073 
     ci_cons_bounds_right: 0.080 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 97 percent done.
ZNF230
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.796173e-02	ci left: 8.189333e-01	ci right 8.338761e-01	k: 8265	n:10000
Cons ci ratio: 2.780176e-02	ci left: 6.559541e-01	ci right 6.745495e-01	k: 6653	n:10000
KS ci ratio: 2.863623e-02	ci left: 6.425708e-01	ci right 6.613406e-01	k: 6520	n:10000
ZNF230   10000 perm   2 sec   (6363 perm/sec)   p_kst 6.520000e-01   p_cons 6.653000e-01   p_joint 8.265000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF230.2_1441_10000_0.652_0.6653_0.8265.png
                gene_name: ZNF230
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.83 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 99 percent done.
ZNF234
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.855515e-02	ci left: 3.849027e-01	ci right 4.041588e-01	k: 3945	n:10000
Cons ci ratio: 6.158970e-02	ci left: 2.793356e-01	ci right 2.971879e-01	k: 2882	n:10000
KS ci ratio: 8.912044e-02	ci left: 1.548277e-01	ci right 1.693697e-01	k: 1620	n:10000
ZNF234   10000 perm   2 sec   (5991 perm/sec)   p_kst 1.620000e-01   p_cons 2.882000e-01   p_joint 3.945000e-01

Outputting figure to mutsig2_images.part000000000195/ZNF234.2_2119_10000_0.162_0.2882_0.3945.png
                gene_name: ZNF234
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000195
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 195 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1705>
Subject: Job 9894213: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1705>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000196> was used as the working directory.
Started at Sat Oct  6 00:36:31 2012
Results reported at Sat Oct  6 00:55:42 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000196.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000196.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 196  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000196.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :   1196.98 sec.
    Max Memory :      3517 MB
    Max Swap   :      6010 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
196
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 196
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 196: processing genes 17580 - 17669
Calculating significance of each gene.
Using projection method.
17580	ZNF236	9.221464e-01
17581	ZNF238	8.294673e-01
17582	ZNF239	8.127886e-01
17583	ZNF24	6.699579e-02
17584	ZNF248	3.993323e-01
17585	ZNF25	3.634484e-01
17586	ZNF250	1
17587	ZNF251	7.834625e-01
17588	ZNF253	2.657378e-01
17589	ZNF254	1.489545e-01
17590	ZNF256	3.999101e-02
17591	ZNF257	4.056874e-01
17592	ZNF259	7.242350e-01
17593	ZNF26	2.768374e-02
17594	ZNF260	1.708621e-01
17595	ZNF263	9.758650e-01
17596	ZNF264	5.097799e-03
17597	ZNF266	5.807927e-02
17598	ZNF267	1.912681e-01
17599	ZNF268	4.399889e-01
17600	ZNF273	4.839513e-01
17601	ZNF274	9.475476e-01
17602	ZNF275	2.793345e-01
17603	ZNF276	7.638520e-01
17604	ZNF277	3.701947e-01
17605	ZNF28	3.792001e-02
17606	ZNF280A	6.125332e-01
17607	ZNF280B	2.547517e-01
17608	ZNF280C	1.373279e-01
17609	ZNF280D	6.729266e-01
17610	ZNF281	4.416057e-01
17611	ZNF282	8.337304e-01
17612	ZNF283	2.700940e-01
17613	ZNF284	1.246011e-01
17614	ZNF285	8.109193e-02
17615	ZNF286A	5.213184e-01
In gene ZNF287 the following bins exceed PROBCAP:
    COAD-AA-A01I	categ 6	N = 2295    n = 1	mu =   3.29e-07
17616	ZNF287	2.902597e-02
17617	ZNF292	4.946763e-02
17618	ZNF295	3.469988e-01
17619	ZNF296	1
17620	ZNF3	4.018524e-01
17621	ZNF30	9.269012e-01
17622	ZNF300	2.473688e-01
17623	ZNF302	4.608026e-01
17624	ZNF304	1.642309e-01
17625	ZNF311	6.141369e-01
17626	ZNF317	2.653047e-01
In gene ZNF318 the following bins exceed PROBCAP:
    READ-AF-2692	categ 6	N = 6477    n = 1	mu =   1.72e-07
17627	ZNF318	2.724387e-01
17628	ZNF319	9.268177e-01
17629	ZNF32	3.217724e-02
17630	ZNF320	3.301747e-01
17631	ZNF321	3.166949e-01
17632	ZNF322A	1
17633	ZNF322B	1.508917e-01
17634	ZNF323	4.235501e-01
17635	ZNF324	9.348047e-01
17636	ZNF324B	9.696970e-01
17637	ZNF326	1.652559e-02
17638	ZNF329	6.281278e-03
17639	ZNF330	1.506820e-01
17640	ZNF331	8.035165e-01
17641	ZNF333	3.290808e-01
In gene ZNF334 the following bins exceed PROBCAP:
    COAD-AA-3678	categ 6	N = 2059    n = 1	mu =   2.96e-07
17642	ZNF334	4.586859e-03
17643	ZNF335	2.142058e-01
17644	ZNF337	1.460844e-02
17645	ZNF33A	2.864215e-01
17646	ZNF33B	4.119128e-01
17647	ZNF34	7.663014e-02
17648	ZNF341	9.014435e-01
17649	ZNF343	8.567218e-01
17650	ZNF345	9.272500e-03
17651	ZNF346	2.743143e-01
17652	ZNF347	4.891495e-01
17653	ZNF35	4.858593e-01
17654	ZNF350	2.136591e-02
17655	ZNF354A	1.661256e-01
17656	ZNF354B	1.900923e-01
17657	ZNF354C	1.736052e-02
17658	ZNF358	1
17659	ZNF362	1.626674e-01
17660	ZNF365	5.711785e-01
17661	ZNF366	6.115820e-01
17662	ZNF367	2.393626e-01
17663	ZNF37A	5.514116e-01
17664	ZNF382	4.883405e-02
17665	ZNF383	1
17666	ZNF384	1
17667	ZNF385A	1.989195e-01
17668	ZNF385B	6.667133e-02
17669	ZNF385D	7.996825e-03
Done

Running MutSig 2:
Scatter job 196: processing genes 17580 - 17669
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF292
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.039986e-02	ci left: 7.787410e-01	ci right 7.948916e-01	k: 7869	n:10000
Cons ci ratio: 3.019958e-02	ci left: 6.179381e-01	ci right 6.369876e-01	k: 6275	n:10000
KS ci ratio: 2.650694e-02	ci left: 6.770018e-01	ci right 6.952896e-01	k: 6862	n:10000
ZNF292   10000 perm   3 sec   (3193 perm/sec)   p_kst 6.862000e-01   p_cons 6.275000e-01   p_joint 7.869000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF292.23_8204_10000_0.6862_0.6275_0.7869.png
                gene_name: ZNF292
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 1 percent done.
ZNF236
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.717009e-02	ci left: 1.971244e-01	ci right 2.130478e-01	k: 2050	n:10000
Cons ci ratio: 1.500300e-01	ci left: 5.908749e-02	ci right 6.876845e-02	k: 638	n:10000
KS ci ratio: 4.967064e-02	ci left: 3.741540e-01	ci right 3.933138e-01	k: 3837	n:10000
ZNF236   10000 perm   2 sec   (4154 perm/sec)   p_kst 3.837000e-01   p_cons 6.380000e-02   p_joint 2.050000e-01

Joint ci ratio: 6.025590e-02	ci left: 1.693613e-01	ci right 1.799334e-01	k: 3492	n:20000
Cons ci ratio: 1.086552e-01	ci left: 5.777083e-02	ci right 6.445747e-02	k: 1221	n:20000
KS ci ratio: 3.448840e-02	ci left: 3.856239e-01	ci right 3.992074e-01	k: 7848	n:20000
ZNF236   20000 perm   5 sec   (3930 perm/sec)   p_kst 3.924000e-01   p_cons 6.105000e-02   p_joint 1.746000e-01

Joint ci ratio: 4.794803e-02	ci left: 1.778132e-01	ci right 1.865818e-01	k: 5465	n:30000
Cons ci ratio: 8.843500e-02	ci left: 5.874203e-02	ci right 6.420994e-02	k: 1843	n:30000
KS ci ratio: 2.819407e-02	ci left: 3.863034e-01	ci right 3.973842e-01	k: 11755	n:30000
ZNF236   30000 perm   8 sec   (3820 perm/sec)   p_kst 3.918333e-01   p_cons 6.143333e-02   p_joint 1.821667e-01

Outputting figure to mutsig2_images.part000000000196/ZNF236.12_5662_30000_0.39183_0.061433_0.18217.png
                gene_name: ZNF236
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.39 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.061 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.064 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 2 percent done.
ZNF267
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.966014e-02	ci left: 3.742535e-01	ci right 3.934142e-01	k: 3838	n:10000
Cons ci ratio: 8.208438e-02	ci left: 1.780224e-01	ci right 1.933612e-01	k: 1856	n:10000
KS ci ratio: 3.552480e-02	ci left: 5.391843e-01	ci right 5.587872e-01	k: 5490	n:10000
ZNF267   10000 perm   2 sec   (5148 perm/sec)   p_kst 5.490000e-01   p_cons 1.856000e-01   p_joint 3.838000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF267.12_2248_10000_0.549_0.1856_0.3838.png
                gene_name: ZNF267
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 4 percent done.
ZNF345
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.321706e-02	ci left: 7.315870e-01	ci right 7.488729e-01	k: 7403	n:10000
Cons ci ratio: 3.899868e-02	ci left: 4.926508e-01	ci right 5.123478e-01	k: 5025	n:10000
KS ci ratio: 9.499931e-03	ci left: 9.399353e-01	ci right 9.490036e-01	k: 9446	n:10000
ZNF345   10000 perm   2 sec   (5358 perm/sec)   p_kst 9.446000e-01   p_cons 5.025000e-01   p_joint 7.403000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF345.12_1471_10000_0.9446_0.5025_0.7403.png
                gene_name: ZNF345
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 5 percent done.
ZNF257
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.430771e-02	ci left: 2.095461e-01	ci right 2.258187e-01	k: 2176	n:10000
Cons ci ratio: 4.159520e-02	ci left: 4.604773e-01	ci right 4.801400e-01	k: 4703	n:10000
KS ci ratio: 1.305483e-01	ci left: 7.727681e-02	ci right 8.816773e-02	k: 826	n:10000
ZNF257   10000 perm   2 sec   (4570 perm/sec)   p_kst 8.260000e-02   p_cons 4.703000e-01   p_joint 2.176000e-01

Joint ci ratio: 6.732100e-02	ci left: 1.400485e-01	ci right 1.498550e-01	k: 2898	n:20000
Cons ci ratio: 2.979219e-02	ci left: 4.570192e-01	ci right 4.708913e-01	k: 9279	n:20000
KS ci ratio: 9.542997e-02	ci left: 7.407543e-02	ci right 8.154786e-02	k: 1555	n:20000
ZNF257   20000 perm   4 sec   (4518 perm/sec)   p_kst 7.775000e-02   p_cons 4.639500e-01   p_joint 1.449000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF257.11_1708_20000_0.07775_0.46395_0.1449.png
                gene_name: ZNF257
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.078 
        ci_ks_bounds_left: 0.074 
       ci_ks_bounds_right: 0.082 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 6 percent done.
ZNF318
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.950888e-02	ci left: 4.861529e-01	ci right 5.058495e-01	k: 4960	n:10000
Cons ci ratio: 6.501604e-02	ci left: 2.578534e-01	ci right 2.752827e-01	k: 2665	n:10000
KS ci ratio: 4.628462e-02	ci left: 4.079093e-01	ci right 4.273387e-01	k: 4176	n:10000
ZNF318   10000 perm   3 sec   (3830 perm/sec)   p_kst 4.176000e-01   p_cons 2.665000e-01   p_joint 4.960000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF318.11_6880_10000_0.4176_0.2665_0.496.png
                gene_name: ZNF318
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 8 percent done.
ZNF283
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.516918e-02	ci left: 1.673034e-01	ci right 1.822866e-01	k: 1747	n:10000
Cons ci ratio: 7.786312e-02	ci left: 1.942671e-01	ci right 2.101068e-01	k: 2021	n:10000
KS ci ratio: 9.537790e-02	ci left: 1.375651e-01	ci right 1.514427e-01	k: 1444	n:10000
ZNF283   10000 perm   2 sec   (5394 perm/sec)   p_kst 1.444000e-01   p_cons 2.021000e-01   p_joint 1.747000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF283.10_2056_10000_0.1444_0.2021_0.1747.png
                gene_name: ZNF283
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 9 percent done.
ZNF264
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.029456e-02	ci left: 2.880544e-01	ci right 3.060640e-01	k: 2970	n:10000
Cons ci ratio: 7.692583e-03	ci left: 9.591130e-01	ci right 9.666143e-01	k: 9630	n:10000
KS ci ratio: 8.612609e-02	ci left: 1.641585e-01	ci right 1.790334e-01	k: 1715	n:10000
ZNF264   10000 perm   2 sec   (5420 perm/sec)   p_kst 1.715000e-01   p_cons 9.630000e-01   p_joint 2.970000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF264.9_1900_10000_0.1715_0.963_0.297.png
                gene_name: ZNF264
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 10 percent done.
ZNF326
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.005007e-02	ci left: 2.897392e-01	ci right 3.077782e-01	k: 2987	n:10000
Cons ci ratio: 5.268928e-02	ci left: 3.468072e-01	ci right 3.656766e-01	k: 3562	n:10000
KS ci ratio: 7.866854e-02	ci left: 1.910164e-01	ci right 2.067594e-01	k: 1988	n:10000
ZNF326   10000 perm   2 sec   (4792 perm/sec)   p_kst 1.988000e-01   p_cons 3.562000e-01   p_joint 2.987000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF326.9_1801_10000_0.1988_0.3562_0.2987.png
                gene_name: ZNF326
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 11 percent done.
ZNF354C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.924902e-02	ci left: 4.894516e-01	ci right 5.091488e-01	k: 4993	n:10000
Cons ci ratio: 2.183513e-02	ci left: 7.547419e-01	ci right 7.715046e-01	k: 7632	n:10000
KS ci ratio: 5.622383e-02	ci left: 3.178069e-01	ci right 3.362939e-01	k: 3270	n:10000
ZNF354C   10000 perm   2 sec   (5419 perm/sec)   p_kst 3.270000e-01   p_cons 7.632000e-01   p_joint 4.993000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF354C.9_1681_10000_0.327_0.7632_0.4993.png
                gene_name: ZNF354C
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 12 percent done.
ZNF385D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.985822e-02	ci left: 6.232646e-01	ci right 6.422580e-01	k: 6328	n:10000
Cons ci ratio: 2.291532e-02	ci left: 7.366399e-01	ci right 7.538170e-01	k: 7453	n:10000
KS ci ratio: 3.879644e-02	ci left: 4.952504e-01	ci right 5.149466e-01	k: 5051	n:10000
ZNF385D   10000 perm   2 sec   (5928 perm/sec)   p_kst 5.051000e-01   p_cons 7.453000e-01   p_joint 6.328000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF385D.9_1220_10000_0.5051_0.7453_0.6328.png
                gene_name: ZNF385D
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 14 percent done.
ZNF266
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.269027e-01	ci left: 8.154699e-02	ci right 9.269490e-02	k: 870	n:10000
Cons ci ratio: 1.309804e-01	ci left: 7.679184e-02	ci right 8.765300e-02	k: 821	n:10000
KS ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
ZNF266   10000 perm   2 sec   (5921 perm/sec)   p_kst 1.864000e-01   p_cons 8.210000e-02   p_joint 8.700000e-02

Joint ci ratio: 8.066715e-02	ci left: 1.013242e-01	ci right 1.098908e-01	k: 2111	n:20000
Cons ci ratio: 8.555098e-02	ci left: 9.092137e-02	ci right 9.909681e-02	k: 1899	n:20000
KS ci ratio: 5.753019e-02	ci left: 1.829518e-01	ci right 1.938389e-01	k: 3767	n:20000
ZNF266   20000 perm   4 sec   (5241 perm/sec)   p_kst 1.883500e-01   p_cons 9.495000e-02   p_joint 1.055500e-01

Outputting figure to mutsig2_images.part000000000196/ZNF266.8_1666_20000_0.18835_0.09495_0.10555.png
                gene_name: ZNF266
               theta_stop: 0.086 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.091 
     ci_cons_bounds_right: 0.099 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 15 percent done.
ZNF28
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.987749e-02	ci left: 6.229630e-01	ci right 6.419597e-01	k: 6325	n:10000
KS ci ratio: 1.633357e-02	ci left: 8.449897e-01	ci right 8.590046e-01	k: 8521	n:10000
ZNF28   10000 perm   2 sec   (4989 perm/sec)   p_kst 8.521000e-01   p_cons 6.325000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF28.8_2002_10000_0.8521_0.6325_1.png
                gene_name: ZNF28
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
ZNF329
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.110101e-02	ci left: 2.247431e-01	ci right 2.414127e-01	k: 2330	n:10000
Cons ci ratio: 1.365803e-01	ci left: 7.088017e-02	ci right 8.136835e-02	k: 760	n:10000
KS ci ratio: 6.350447e-02	ci left: 2.670569e-01	ci right 2.846738e-01	k: 2758	n:10000
ZNF329   10000 perm   2 sec   (5409 perm/sec)   p_kst 2.758000e-01   p_cons 7.600000e-02   p_joint 2.330000e-01

Joint ci ratio: 6.219628e-02	ci left: 1.605216e-01	ci right 1.708758e-01	k: 3313	n:20000
Cons ci ratio: 1.018944e-01	ci left: 6.537877e-02	ci right 7.244718e-02	k: 1377	n:20000
KS ci ratio: 4.466988e-02	ci left: 2.717489e-01	ci right 2.842157e-01	k: 5559	n:20000
ZNF329   20000 perm   4 sec   (4862 perm/sec)   p_kst 2.779500e-01   p_cons 6.885000e-02   p_joint 1.656500e-01

Joint ci ratio: 6.679990e-02	ci left: 9.951666e-02	ci right 1.064271e-01	k: 3088	n:30000
Cons ci ratio: 8.223961e-02	ci left: 6.749752e-02	ci right 7.331934e-02	k: 2111	n:30000
KS ci ratio: 3.675045e-02	ci left: 2.698863e-01	ci right 2.800239e-01	k: 8248	n:30000
ZNF329   30000 perm   6 sec   (4666 perm/sec)   p_kst 2.749333e-01   p_cons 7.036667e-02   p_joint 1.029333e-01

Outputting figure to mutsig2_images.part000000000196/ZNF329.8_1630_30000_0.27493_0.070367_0.10293.png
                gene_name: ZNF329
               theta_stop: 0.082 
                    nperm: 30000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.070 
      ci_cons_bounds_left: 0.067 
     ci_cons_bounds_right: 0.073 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.100 
    ci_joint_bounds_right: 0.11 

Current progress: 18 percent done.
ZNF334
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.710380e-02	ci left: 3.110592e-01	ci right 3.294457e-01	k: 3202	n:10000
Cons ci ratio: 1.019464e-01	ci left: 1.221955e-01	ci right 1.354215e-01	k: 1287	n:10000
KS ci ratio: 2.867409e-02	ci left: 6.419672e-01	ci right 6.607446e-01	k: 6514	n:10000
ZNF334   10000 perm   2 sec   (5164 perm/sec)   p_kst 6.514000e-01   p_cons 1.287000e-01   p_joint 3.202000e-01

Joint ci ratio: 3.619666e-02	ci left: 3.629046e-01	ci right 3.763333e-01	k: 7392	n:20000
Cons ci ratio: 7.460246e-02	ci left: 1.167565e-01	ci right 1.258540e-01	k: 2425	n:20000
KS ci ratio: 1.899450e-02	ci left: 6.739366e-01	ci right 6.869109e-01	k: 13609	n:20000
ZNF334   20000 perm   4 sec   (4690 perm/sec)   p_kst 6.804500e-01   p_cons 1.212500e-01   p_joint 3.696000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF334.8_2059_20000_0.68045_0.12125_0.3696.png
                gene_name: ZNF334
               theta_stop: 0.075 
                    nperm: 20000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 19 percent done.
ZNF335
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.812101e-01	ci left: 4.063733e-02	ci right 4.883054e-02	k: 446	n:10000
Cons ci ratio: 4.557831e-02	ci left: 4.153838e-01	ci right 4.348599e-01	k: 4251	n:10000
KS ci ratio: 6.185349e-01	ci left: 2.774707e-03	ci right 5.327611e-03	k: 39	n:10000
ZNF335   10000 perm   2 sec   (4576 perm/sec)   p_kst 3.900000e-03   p_cons 4.251000e-01   p_joint 4.460000e-02

Joint ci ratio: 1.950228e-01	ci left: 1.786671e-02	ci right 2.177465e-02	k: 395	n:20000
Cons ci ratio: 3.182616e-02	ci left: 4.244216e-01	ci right 4.381984e-01	k: 8626	n:20000
KS ci ratio: 4.373811e-01	ci left: 3.128462e-03	ci right 4.920482e-03	k: 79	n:20000
ZNF335   20000 perm   5 sec   (4192 perm/sec)   p_kst 3.950000e-03   p_cons 4.313000e-01   p_joint 1.975000e-02

Joint ci ratio: 1.861452e-01	ci left: 1.320961e-02	ci right 1.595225e-02	k: 436	n:30000
Cons ci ratio: 2.592326e-02	ci left: 4.268840e-01	ci right 4.381291e-01	k: 12975	n:30000
KS ci ratio: 3.586265e-01	ci left: 3.256774e-03	ci right 4.708553e-03	k: 118	n:30000
ZNF335   30000 perm   7 sec   (4039 perm/sec)   p_kst 3.933333e-03   p_cons 4.325000e-01   p_joint 1.453333e-02

Joint ci ratio: 2.189445e-01	ci left: 7.079431e-03	ci right 8.843125e-03	k: 317	n:40000
Cons ci ratio: 2.251123e-02	ci left: 4.263144e-01	ci right 4.360456e-01	k: 17247	n:40000
KS ci ratio: 3.142474e-01	ci left: 3.266865e-03	ci right 4.506872e-03	k: 154	n:40000
ZNF335   40000 perm   10 sec   (3929 perm/sec)   p_kst 3.850000e-03   p_cons 4.311750e-01   p_joint 7.925000e-03

Joint ci ratio: 1.582696e-01	ci left: 1.116008e-02	ci right 1.309718e-02	k: 605	n:50000
Cons ci ratio: 2.012807e-02	ci left: 4.269930e-01	ci right 4.356950e-01	k: 21567	n:50000
KS ci ratio: 2.845958e-01	ci left: 3.242521e-03	ci right 4.336333e-03	k: 188	n:50000
ZNF335   50000 perm   13 sec   (3851 perm/sec)   p_kst 3.760000e-03   p_cons 4.313400e-01   p_joint 1.210000e-02

Joint ci ratio: 1.530378e-01	ci left: 9.988355e-03	ci right 1.165947e-02	k: 648	n:60000
Cons ci ratio: 1.840155e-02	ci left: 4.266497e-01	ci right 4.345903e-01	k: 25837	n:60000
KS ci ratio: 2.608407e-01	ci left: 3.261149e-03	ci right 4.254469e-03	k: 224	n:60000
ZNF335   60000 perm   16 sec   (3775 perm/sec)   p_kst 3.733333e-03   p_cons 4.306167e-01   p_joint 1.080000e-02

Joint ci ratio: 1.108309e-01	ci left: 1.658321e-02	ci right 1.854278e-02	k: 1228	n:70000
Cons ci ratio: 1.706451e-02	ci left: 4.261428e-01	ci right 4.334916e-01	k: 30087	n:70000
KS ci ratio: 2.293147e-01	ci left: 3.680541e-03	ci right 4.646986e-03	k: 290	n:70000
ZNF335   70000 perm   19 sec   (3707 perm/sec)   p_kst 4.142857e-03   p_cons 4.298143e-01   p_joint 1.754286e-02

Joint ci ratio: 1.121185e-01	ci left: 1.420554e-02	ci right 1.590490e-02	k: 1203	n:80000
Cons ci ratio: 1.596412e-02	ci left: 4.263284e-01	ci right 4.332016e-01	k: 34381	n:80000
KS ci ratio: 2.134026e-01	ci left: 3.751835e-03	ci right 4.659700e-03	k: 335	n:80000
ZNF335   80000 perm   22 sec   (3642 perm/sec)   p_kst 4.187500e-03   p_cons 4.297625e-01   p_joint 1.503750e-02

Joint ci ratio: 1.152087e-01	ci left: 1.196782e-02	ci right 1.344161e-02	k: 1142	n:90000
Cons ci ratio: 1.502955e-02	ci left: 4.272285e-01	ci right 4.337093e-01	k: 38742	n:90000
KS ci ratio: 2.020047e-01	ci left: 3.745771e-03	ci right 4.597787e-03	k: 374	n:90000
ZNF335   90000 perm   25 sec   (3584 perm/sec)   p_kst 4.155556e-03   p_cons 4.304667e-01   p_joint 1.268889e-02

Joint ci ratio: 1.115420e-01	ci left: 1.151906e-02	ci right 1.288946e-02	k: 1219	n:100000
Cons ci ratio: 1.425037e-02	ci left: 4.276679e-01	ci right 4.338161e-01	k: 43074	n:100000
KS ci ratio: 1.931968e-01	ci left: 3.703875e-03	ci right 4.505309e-03	k: 409	n:100000
ZNF335   100000 perm   28 sec   (3529 perm/sec)   p_kst 4.090000e-03   p_cons 4.307400e-01   p_joint 1.219000e-02

Joint ci ratio: 1.081185e-01	ci left: 1.117021e-02	ci right 1.245572e-02	k: 1298	n:110000
Cons ci ratio: 1.359664e-02	ci left: 4.274713e-01	ci right 4.333323e-01	k: 47344	n:110000
KS ci ratio: 1.844114e-01	ci left: 3.713616e-03	ci right 4.476532e-03	k: 449	n:110000
ZNF335   110000 perm   32 sec   (3476 perm/sec)   p_kst 4.081818e-03   p_cons 4.304000e-01   p_joint 1.180000e-02

Joint ci ratio: 1.080463e-01	ci left: 1.026342e-02	ci right 1.144373e-02	k: 1301	n:120000
Cons ci ratio: 1.277081e-02	ci left: 4.370056e-01	ci right 4.426307e-01	k: 52778	n:120000
KS ci ratio: 1.742429e-01	ci left: 3.833982e-03	ci right 4.573627e-03	k: 503	n:120000
ZNF335   120000 perm   35 sec   (3427 perm/sec)   p_kst 4.191667e-03   p_cons 4.398167e-01   p_joint 1.084167e-02

Joint ci ratio: 1.096771e-01	ci left: 9.196784e-03	ci right 1.027141e-02	k: 1264	n:130000
Cons ci ratio: 1.226333e-02	ci left: 4.373760e-01	ci right 4.427805e-01	k: 57210	n:130000
KS ci ratio: 1.672535e-01	ci left: 3.855702e-03	ci right 4.566694e-03	k: 546	n:130000
ZNF335   130000 perm   38 sec   (3379 perm/sec)   p_kst 4.200000e-03   p_cons 4.400769e-01   p_joint 9.723077e-03

Joint ci ratio: 1.082149e-01	ci left: 8.782956e-03	ci right 9.794667e-03	k: 1299	n:140000
Cons ci ratio: 1.180626e-02	ci left: 4.379329e-01	ci right 4.431410e-01	k: 61675	n:140000
KS ci ratio: 1.621506e-01	ci left: 3.819985e-03	ci right 4.500804e-03	k: 581	n:140000
ZNF335   140000 perm   42 sec   (3324 perm/sec)   p_kst 4.150000e-03   p_cons 4.405357e-01   p_joint 9.278571e-03

Joint ci ratio: 1.066467e-01	ci left: 8.450361e-03	ci right 9.408765e-03	k: 1338	n:150000
Cons ci ratio: 1.138335e-02	ci left: 4.389982e-01	ci right 4.440307e-01	k: 66227	n:150000
KS ci ratio: 1.572322e-01	ci left: 3.802127e-03	ci right 4.457269e-03	k: 618	n:150000
ZNF335   150000 perm   46 sec   (3280 perm/sec)   p_kst 4.120000e-03   p_cons 4.415133e-01   p_joint 8.920000e-03

Joint ci ratio: 1.071213e-01	ci left: 7.855172e-03	ci right 8.750282e-03	k: 1327	n:160000
Cons ci ratio: 1.101129e-02	ci left: 4.395520e-01	ci right 4.444251e-01	k: 70718	n:160000
KS ci ratio: 1.513519e-01	ci left: 3.858931e-03	ci right 4.496742e-03	k: 667	n:160000
ZNF335   160000 perm   50 sec   (3229 perm/sec)   p_kst 4.168750e-03   p_cons 4.419875e-01   p_joint 8.293750e-03

Joint ci ratio: 1.055182e-01	ci left: 7.627818e-03	ci right 8.483204e-03	k: 1368	n:170000
Cons ci ratio: 1.068264e-02	ci left: 4.396197e-01	ci right 4.443470e-01	k: 75137	n:170000
KS ci ratio: 1.468070e-01	ci left: 3.869781e-03	ci right 4.488493e-03	k: 709	n:170000
ZNF335   170000 perm   53 sec   (3192 perm/sec)   p_kst 4.170588e-03   p_cons 4.419824e-01   p_joint 8.047059e-03

Joint ci ratio: 1.027789e-01	ci left: 7.604448e-03	ci right 8.433737e-03	k: 1442	n:180000
Cons ci ratio: 1.038726e-02	ci left: 4.394207e-01	ci right 4.440145e-01	k: 79509	n:180000
KS ci ratio: 1.413333e-01	ci left: 3.954704e-03	ci right 4.561433e-03	k: 765	n:180000
ZNF335   180000 perm   57 sec   (3155 perm/sec)   p_kst 4.250000e-03   p_cons 4.417167e-01   p_joint 8.011111e-03

Joint ci ratio: 8.714706e-02	ci left: 1.007742e-02	ci right 1.100076e-02	k: 2001	n:190000
Cons ci ratio: 1.030016e-02	ci left: 4.303286e-01	ci right 4.347892e-01	k: 82186	n:190000
KS ci ratio: 1.372704e-01	ci left: 3.980234e-03	ci right 4.571890e-03	k: 811	n:190000
ZNF335   190000 perm   61 sec   (3119 perm/sec)   p_kst 4.268421e-03   p_cons 4.325579e-01   p_joint 1.053158e-02

Joint ci ratio: 8.719227e-02	ci left: 9.568549e-03	ci right 1.044574e-02	k: 2000	n:200000
Cons ci ratio: 1.004167e-02	ci left: 4.302723e-01	ci right 4.346197e-01	k: 86489	n:200000
KS ci ratio: 1.336955e-01	ci left: 3.993768e-03	ci right 4.570746e-03	k: 855	n:200000
ZNF335   200000 perm   65 sec   (3084 perm/sec)   p_kst 4.275000e-03   p_cons 4.324450e-01   p_joint 1.000000e-02

Joint ci ratio: 8.600633e-02	ci left: 9.373754e-03	ci right 1.022081e-02	k: 2056	n:210000
Cons ci ratio: 9.804369e-03	ci left: 4.300893e-01	ci right 4.343316e-01	k: 90764	n:210000
KS ci ratio: 1.302408e-01	ci left: 4.015407e-03	ci right 4.579363e-03	k: 901	n:210000
ZNF335   210000 perm   69 sec   (3049 perm/sec)   p_kst 4.290476e-03   p_cons 4.322095e-01   p_joint 9.790476e-03

Joint ci ratio: 8.541992e-02	ci left: 9.076607e-03	ci right 9.890940e-03	k: 2085	n:220000
Cons ci ratio: 9.578076e-03	ci left: 4.301831e-01	ci right 4.343278e-01	k: 95096	n:220000
KS ci ratio: 1.268394e-01	ci left: 4.048459e-03	ci right 4.601090e-03	k: 950	n:220000
ZNF335   220000 perm   73 sec   (3004 perm/sec)   p_kst 4.318182e-03   p_cons 4.322545e-01   p_joint 9.477273e-03

Joint ci ratio: 8.574938e-02	ci left: 8.618063e-03	ci right 9.394386e-03	k: 2070	n:230000
Cons ci ratio: 9.365434e-03	ci left: 4.303393e-01	ci right 4.343929e-01	k: 99444	n:230000
KS ci ratio: 1.240656e-01	ci left: 4.053529e-03	ci right 4.593862e-03	k: 993	n:230000
ZNF335   230000 perm   77 sec   (2968 perm/sec)   p_kst 4.317391e-03   p_cons 4.323652e-01   p_joint 9.000000e-03

Joint ci ratio: 8.618639e-02	ci left: 8.177356e-03	ci right 8.917920e-03	k: 2050	n:240000
Cons ci ratio: 9.169155e-03	ci left: 4.303334e-01	ci right 4.343015e-01	k: 103756	n:240000
KS ci ratio: 1.213487e-01	ci left: 4.066378e-03	ci right 4.595702e-03	k: 1038	n:240000
ZNF335   240000 perm   82 sec   (2933 perm/sec)   p_kst 4.325000e-03   p_cons 4.323167e-01   p_joint 8.541667e-03

Joint ci ratio: 8.741259e-02	ci left: 7.631030e-03	ci right 8.332449e-03	k: 1994	n:250000
Cons ci ratio: 8.987870e-03	ci left: 4.301570e-01	ci right 4.340446e-01	k: 108025	n:250000
KS ci ratio: 1.189131e-01	ci left: 4.070555e-03	ci right 4.589040e-03	k: 1081	n:250000
ZNF335   250000 perm   86 sec   (2900 perm/sec)   p_kst 4.324000e-03   p_cons 4.321000e-01   p_joint 7.976000e-03

Joint ci ratio: 8.569012e-02	ci left: 7.642326e-03	ci right 8.330249e-03	k: 2075	n:260000
Cons ci ratio: 8.810572e-03	ci left: 4.303485e-01	ci right 4.341607e-01	k: 112386	n:260000
KS ci ratio: 1.165665e-01	ci left: 4.078243e-03	ci right 4.586750e-03	k: 1125	n:260000
ZNF335   260000 perm   91 sec   (2868 perm/sec)   p_kst 4.326923e-03   p_cons 4.322538e-01   p_joint 7.980769e-03

Joint ci ratio: 8.456102e-02	ci left: 7.562255e-03	ci right 8.233558e-03	k: 2131	n:270000
Cons ci ratio: 8.649370e-03	ci left: 4.301860e-01	ci right 4.339266e-01	k: 116655	n:270000
KS ci ratio: 1.142065e-01	ci left: 4.096249e-03	ci right 4.595964e-03	k: 1172	n:270000
ZNF335   270000 perm   95 sec   (2836 perm/sec)   p_kst 4.340741e-03   p_cons 4.320556e-01   p_joint 7.892593e-03

Joint ci ratio: 8.532228e-02	ci left: 7.162776e-03	ci right 7.804625e-03	k: 2094	n:280000
Cons ci ratio: 8.490830e-03	ci left: 4.303747e-01	ci right 4.340481e-01	k: 121019	n:280000
KS ci ratio: 1.124481e-01	ci left: 4.078350e-03	ci right 4.567712e-03	k: 1209	n:280000
ZNF335   280000 perm   100 sec   (2807 perm/sec)   p_kst 4.317857e-03   p_cons 4.322107e-01   p_joint 7.478571e-03

Joint ci ratio: 8.414796e-02	ci left: 7.114913e-03	ci right 7.743267e-03	k: 2153	n:290000
Cons ci ratio: 8.346619e-03	ci left: 4.302030e-01	ci right 4.338122e-01	k: 125282	n:290000
KS ci ratio: 1.104576e-01	ci left: 4.085212e-03	ci right 4.566156e-03	k: 1253	n:290000
ZNF335   290000 perm   105 sec   (2771 perm/sec)   p_kst 4.320690e-03   p_cons 4.320069e-01   p_joint 7.424138e-03

Joint ci ratio: 8.317238e-02	ci left: 7.044182e-03	ci right 7.658726e-03	k: 2204	n:300000
Cons ci ratio: 8.200263e-03	ci left: 4.305962e-01	ci right 4.341451e-01	k: 129711	n:300000
KS ci ratio: 1.086112e-01	ci left: 4.088445e-03	ci right 4.561209e-03	k: 1296	n:300000
ZNF335   300000 perm   109 sec   (2745 perm/sec)   p_kst 4.320000e-03   p_cons 4.323700e-01   p_joint 7.346667e-03

Joint ci ratio: 8.288000e-02	ci left: 6.867466e-03	ci right 7.464384e-03	k: 2220	n:310000
Cons ci ratio: 8.070773e-03	ci left: 4.303907e-01	ci right 4.338815e-01	k: 133962	n:310000
KS ci ratio: 1.070149e-01	ci left: 4.078973e-03	ci right 4.543272e-03	k: 1335	n:310000
ZNF335   310000 perm   114 sec   (2717 perm/sec)   p_kst 4.306452e-03   p_cons 4.321355e-01   p_joint 7.161290e-03

Joint ci ratio: 8.183841e-02	ci left: 6.827308e-03	ci right 7.412922e-03	k: 2277	n:320000
Cons ci ratio: 7.943483e-03	ci left: 4.304296e-01	ci right 4.338654e-01	k: 138287	n:320000
KS ci ratio: 1.056802e-01	ci left: 4.054926e-03	ci right 4.510373e-03	k: 1369	n:320000
ZNF335   320000 perm   119 sec   (2689 perm/sec)   p_kst 4.278125e-03   p_cons 4.321469e-01   p_joint 7.115625e-03

Joint ci ratio: 8.163108e-02	ci left: 6.656016e-03	ci right 7.225421e-03	k: 2289	n:330000
Cons ci ratio: 7.822515e-03	ci left: 4.304362e-01	ci right 4.338195e-01	k: 142602	n:330000
KS ci ratio: 1.039858e-01	ci left: 4.064839e-03	ci right 4.513632e-03	k: 1414	n:330000
ZNF335   330000 perm   124 sec   (2663 perm/sec)   p_kst 4.284848e-03   p_cons 4.321273e-01   p_joint 6.936364e-03

Joint ci ratio: 7.753518e-02	ci left: 7.172344e-03	ci right 7.753745e-03	k: 2536	n:340000
Cons ci ratio: 7.705941e-03	ci left: 4.305046e-01	ci right 4.338377e-01	k: 146938	n:340000
KS ci ratio: 1.024057e-01	ci left: 4.071357e-03	ci right 4.513628e-03	k: 1458	n:340000
ZNF335   340000 perm   129 sec   (2636 perm/sec)   p_kst 4.288235e-03   p_cons 4.321706e-01   p_joint 7.458824e-03

Joint ci ratio: 7.237711e-02	ci left: 8.010497e-03	ci right 8.614829e-03	k: 2908	n:350000
Cons ci ratio: 7.594162e-03	ci left: 4.305865e-01	ci right 4.338717e-01	k: 151280	n:350000
KS ci ratio: 1.011662e-01	ci left: 4.055269e-03	ci right 4.490144e-03	k: 1494	n:350000
ZNF335   350000 perm   134 sec   (2609 perm/sec)   p_kst 4.268571e-03   p_cons 4.322286e-01   p_joint 8.308571e-03

Joint ci ratio: 7.385877e-02	ci left: 7.477030e-03	ci right 8.053158e-03	k: 2794	n:360000
Cons ci ratio: 7.486390e-03	ci left: 4.307114e-01	ci right 4.339508e-01	k: 155639	n:360000
KS ci ratio: 9.967683e-02	ci left: 4.064484e-03	ci right 4.493555e-03	k: 1539	n:360000
ZNF335   360000 perm   139 sec   (2584 perm/sec)   p_kst 4.275000e-03   p_cons 4.323306e-01   p_joint 7.761111e-03

Outputting figure to mutsig2_images.part000000000196/ZNF335.8_4137_360000_0.004275_0.43233_0.0077611.png
                gene_name: ZNF335
               theta_stop: 0.100 
                    nperm: 360000 
                     p_ks: 0.0043 
        ci_ks_bounds_left: 0.0041 
       ci_ks_bounds_right: 0.0045 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.0078 
     ci_joint_bounds_left: 0.0075 
    ci_joint_bounds_right: 0.0081 

Current progress: 20 percent done.
ZNF337
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.913003e-02	ci left: 6.347256e-01	ci right 6.535903e-01	k: 6442	n:10000
Cons ci ratio: 1.741446e-02	ci left: 8.277812e-01	ci right 8.424231e-01	k: 8352	n:10000
KS ci ratio: 3.779278e-02	ci left: 5.083526e-01	ci right 5.280368e-01	k: 5182	n:10000
ZNF337   10000 perm   2 sec   (4942 perm/sec)   p_kst 5.182000e-01   p_cons 8.352000e-01   p_joint 6.442000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF337.8_2272_10000_0.5182_0.8352_0.6442.png
                gene_name: ZNF337
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.52 
        ci_ks_bounds_left: 0.51 
       ci_ks_bounds_right: 0.53 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.65 

Current progress: 21 percent done.
ZNF382
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.186790e-02	ci left: 1.788095e-01	ci right 1.941736e-01	k: 1864	n:10000
Cons ci ratio: 3.502554e-02	ci left: 5.461967e-01	ci right 5.657707e-01	k: 5560	n:10000
KS ci ratio: 1.286084e-01	ci left: 7.950840e-02	ci right 9.053475e-02	k: 849	n:10000
ZNF382   10000 perm   2 sec   (5578 perm/sec)   p_kst 8.490000e-02   p_cons 5.560000e-01   p_joint 1.864000e-01

Joint ci ratio: 5.346336e-02	ci left: 2.061546e-01	ci right 2.175293e-01	k: 4236	n:20000
Cons ci ratio: 2.461325e-02	ci left: 5.521859e-01	ci right 5.659969e-01	k: 11182	n:20000
KS ci ratio: 8.923154e-02	ci left: 8.405991e-02	ci right 9.196034e-02	k: 1759	n:20000
ZNF382   20000 perm   4 sec   (5034 perm/sec)   p_kst 8.795000e-02   p_cons 5.591000e-01   p_joint 2.118000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF382.8_1665_20000_0.08795_0.5591_0.2118.png
                gene_name: ZNF382
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 22 percent done.
ZNF286A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.461446e-02	ci left: 2.081653e-01	ci right 2.244003e-01	k: 2162	n:10000
Cons ci ratio: 7.108113e-02	ci left: 2.248418e-01	ci right 2.415139e-01	k: 2331	n:10000
KS ci ratio: 7.946732e-02	ci left: 1.878651e-01	ci right 2.035126e-01	k: 1956	n:10000
ZNF286A   10000 perm   2 sec   (6097 perm/sec)   p_kst 1.956000e-01   p_cons 2.331000e-01   p_joint 2.162000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF286A.7_1586_10000_0.1956_0.2331_0.2162.png
                gene_name: ZNF286A
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 24 percent done.
ZNF287
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.033941e-02	ci left: 4.757596e-01	ci right 4.954488e-01	k: 4856	n:10000
Cons ci ratio: 8.397822e-02	ci left: 1.713341e-01	ci right 1.864535e-01	k: 1788	n:10000
KS ci ratio: 8.990802e-03	ci left: 9.456495e-01	ci right 9.542860e-01	k: 9501	n:10000
ZNF287   10000 perm   2 sec   (4613 perm/sec)   p_kst 9.501000e-01   p_cons 1.788000e-01   p_joint 4.856000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF287.7_2306_10000_0.9501_0.1788_0.4856.png
                gene_name: ZNF287
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 25 percent done.
ZNF350
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.306344e-01	ci left: 7.717981e-02	ci right 8.806479e-02	k: 825	n:10000
Cons ci ratio: 1.221246e-01	ci left: 8.766844e-02	ci right 9.916968e-02	k: 933	n:10000
KS ci ratio: 1.281149e-01	ci left: 8.009076e-02	ci right 9.115204e-02	k: 855	n:10000
ZNF350   10000 perm   2 sec   (5396 perm/sec)   p_kst 8.550000e-02   p_cons 9.330000e-02   p_joint 8.250000e-02

Joint ci ratio: 1.309216e-01	ci left: 4.008492e-02	ci right 4.574894e-02	k: 857	n:20000
Cons ci ratio: 8.909285e-02	ci left: 8.430484e-02	ci right 9.221534e-02	k: 1764	n:20000
KS ci ratio: 9.225269e-02	ci left: 7.896763e-02	ci right 8.665417e-02	k: 1655	n:20000
ZNF350   20000 perm   4 sec   (4874 perm/sec)   p_kst 8.275000e-02   p_cons 8.820000e-02   p_joint 4.285000e-02

Joint ci ratio: 8.669482e-02	ci left: 6.102746e-02	ci right 6.659071e-02	k: 1913	n:30000
Cons ci ratio: 7.353163e-02	ci left: 8.334258e-02	ci right 8.973775e-02	k: 2595	n:30000
KS ci ratio: 7.554024e-02	ci left: 7.924681e-02	ci right 8.550102e-02	k: 2470	n:30000
ZNF350   30000 perm   6 sec   (4657 perm/sec)   p_kst 8.233333e-02   p_cons 8.650000e-02   p_joint 6.376667e-02

Outputting figure to mutsig2_images.part000000000196/ZNF350.7_1615_30000_0.082333_0.0865_0.063767.png
                gene_name: ZNF350
               theta_stop: 0.087 
                    nperm: 30000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.079 
       ci_ks_bounds_right: 0.086 
                   p_cons: 0.086 
      ci_cons_bounds_left: 0.083 
     ci_cons_bounds_right: 0.090 
                  p_joint: 0.064 
     ci_joint_bounds_left: 0.061 
    ci_joint_bounds_right: 0.067 

Current progress: 26 percent done.
ZNF354A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.483020e-01	ci left: 6.043844e-02	ci right 7.021664e-02	k: 652	n:10000
Cons ci ratio: 2.626723e-02	ci left: 6.809317e-01	ci right 6.991575e-01	k: 6901	n:10000
KS ci ratio: 1.915330e-01	ci left: 3.633915e-02	ci right 4.413159e-02	k: 401	n:10000
ZNF354A   10000 perm   2 sec   (5655 perm/sec)   p_kst 4.010000e-02   p_cons 6.901000e-01   p_joint 6.520000e-02

Joint ci ratio: 9.470588e-02	ci left: 7.515134e-02	ci right 8.267162e-02	k: 1577	n:20000
Cons ci ratio: 1.854392e-02	ci left: 6.843425e-01	ci right 6.972020e-01	k: 13816	n:20000
KS ci ratio: 1.342244e-01	ci left: 3.814864e-02	ci right 4.368584e-02	k: 817	n:20000
ZNF354A   20000 perm   4 sec   (5107 perm/sec)   p_kst 4.085000e-02   p_cons 6.908000e-01   p_joint 7.885000e-02

Joint ci ratio: 7.310089e-02	ci left: 8.426035e-02	ci right 9.068647e-02	k: 2623	n:30000
Cons ci ratio: 1.540995e-02	ci left: 6.779348e-01	ci right 6.884964e-01	k: 20497	n:30000
KS ci ratio: 1.101574e-01	ci left: 3.826480e-02	ci right 4.275808e-02	k: 1214	n:30000
ZNF354A   30000 perm   6 sec   (4870 perm/sec)   p_kst 4.046667e-02   p_cons 6.832333e-01   p_joint 8.743333e-02

Joint ci ratio: 5.822693e-02	ci left: 9.880381e-02	ci right 1.047541e-01	k: 4070	n:40000
Cons ci ratio: 1.306517e-02	ci left: 6.878008e-01	ci right 6.968712e-01	k: 27694	n:40000
KS ci ratio: 9.524641e-02	ci left: 3.868680e-02	ci right 4.258024e-02	k: 1624	n:40000
ZNF354A   40000 perm   9 sec   (4696 perm/sec)   p_kst 4.060000e-02   p_cons 6.923500e-01   p_joint 1.017500e-01

Outputting figure to mutsig2_images.part000000000196/ZNF354A.7_1834_40000_0.0406_0.69235_0.10175.png
                gene_name: ZNF354A
               theta_stop: 0.095 
                    nperm: 40000 
                     p_ks: 0.041 
        ci_ks_bounds_left: 0.039 
       ci_ks_bounds_right: 0.043 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.10 

Current progress: 28 percent done.
ZNF24
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.442098e-01	ci left: 6.381856e-02	ci right 7.383439e-02	k: 687	n:10000
Cons ci ratio: 8.252124e-02	ci left: 1.764483e-01	ci right 1.917362e-01	k: 1840	n:10000
KS ci ratio: 1.059497e-01	ci left: 1.139852e-01	ci right 1.268368e-01	k: 1203	n:10000
ZNF24   10000 perm   2 sec   (5655 perm/sec)   p_kst 1.203000e-01   p_cons 1.840000e-01   p_joint 6.870000e-02

Joint ci ratio: 7.882259e-02	ci left: 1.056956e-01	ci right 1.144182e-01	k: 2200	n:20000
Cons ci ratio: 5.838128e-02	ci left: 1.785522e-01	ci right 1.893398e-01	k: 3678	n:20000
KS ci ratio: 7.614660e-02	ci left: 1.125272e-01	ci right 1.214845e-01	k: 2339	n:20000
ZNF24   20000 perm   4 sec   (5111 perm/sec)   p_kst 1.169500e-01   p_cons 1.839000e-01   p_joint 1.100000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF24.6_1119_20000_0.11695_0.1839_0.11.png
                gene_name: ZNF24
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.11 

Current progress: 29 percent done.
ZNF256
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.175519e-02	ci left: 2.782460e-01	ci right 2.960782e-01	k: 2871	n:10000
Cons ci ratio: 3.608784e-02	ci left: 5.313727e-01	ci right 5.510033e-01	k: 5412	n:10000
KS ci ratio: 7.876742e-02	ci left: 1.906225e-01	ci right 2.063536e-01	k: 1984	n:10000
ZNF256   10000 perm   2 sec   (5319 perm/sec)   p_kst 1.984000e-01   p_cons 5.412000e-01   p_joint 2.871000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF256.6_1896_10000_0.1984_0.5412_0.2871.png
                gene_name: ZNF256
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 30 percent done.
ZNF26
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.151493e-02	ci left: 7.601055e-01	ci right 7.767378e-01	k: 7685	n:10000
Cons ci ratio: 5.698598e-02	ci left: 3.119521e-01	ci right 3.303522e-01	k: 3211	n:10000
KS ci ratio: 1.061076e-02	ci left: 9.266822e-01	ci right 9.366646e-01	k: 9318	n:10000
ZNF26   10000 perm   2 sec   (5717 perm/sec)   p_kst 9.318000e-01   p_cons 3.211000e-01   p_joint 7.685000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF26.6_1618_10000_0.9318_0.3211_0.7685.png
                gene_name: ZNF26
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 31 percent done.
ZNF280C
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.818666e-02	ci left: 8.152741e-01	ci right 8.303374e-01	k: 8229	n:10000
Cons ci ratio: 6.155970e-02	ci left: 2.795337e-01	ci right 2.973897e-01	k: 2884	n:10000
KS ci ratio: 2.109753e-02	ci left: 7.670911e-01	ci right 7.835482e-01	k: 7754	n:10000
ZNF280C   10000 perm   2 sec   (5181 perm/sec)   p_kst 7.754000e-01   p_cons 2.884000e-01   p_joint 8.229000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF280C.6_2286_10000_0.7754_0.2884_0.8229.png
                gene_name: ZNF280C
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.82 
    ci_joint_bounds_right: 0.83 

Current progress: 32 percent done.
ZNF284
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.496836e-02	ci left: 2.065875e-01	ci right 2.227791e-01	k: 2146	n:10000
Cons ci ratio: 1.204255e-01	ci left: 9.000254e-02	ci right 1.016341e-01	k: 957	n:10000
KS ci ratio: 3.826467e-02	ci left: 5.021507e-01	ci right 5.218423e-01	k: 5120	n:10000
ZNF284   10000 perm   2 sec   (5969 perm/sec)   p_kst 5.120000e-01   p_cons 9.570000e-02   p_joint 2.146000e-01

Joint ci ratio: 4.746533e-02	ci left: 2.482263e-01	ci right 2.603452e-01	k: 5085	n:20000
Cons ci ratio: 8.181969e-02	ci left: 9.872217e-02	ci right 1.071937e-01	k: 2058	n:20000
KS ci ratio: 2.730933e-02	ci left: 5.004456e-01	ci right 5.143523e-01	k: 10148	n:20000
ZNF284   20000 perm   4 sec   (5363 perm/sec)   p_kst 5.074000e-01   p_cons 1.029000e-01   p_joint 2.542500e-01

Outputting figure to mutsig2_images.part000000000196/ZNF284.6_1798_20000_0.5074_0.1029_0.25425.png
                gene_name: ZNF284
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.25 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.26 

Current progress: 34 percent done.
ZNF295
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.486315e-02	ci left: 7.041236e-01	ci right 7.219521e-01	k: 7131	n:10000
KS ci ratio: 3.045847e-02	ci left: 6.139190e-01	ci right 6.330091e-01	k: 6235	n:10000
ZNF295   10000 perm   2 sec   (4944 perm/sec)   p_kst 6.235000e-01   p_cons 7.131000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF295.6_3205_10000_0.6235_0.7131_1.png
                gene_name: ZNF295
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 35 percent done.
ZNF304
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.228697e-02	ci left: 9.048375e-01	ci right 9.161220e-01	k: 9106	n:10000
Cons ci ratio: 1.646289e-02	ci left: 8.429516e-01	ci right 8.570439e-01	k: 8501	n:10000
KS ci ratio: 2.981969e-02	ci left: 6.238676e-01	ci right 6.428546e-01	k: 6334	n:10000
ZNF304   10000 perm   2 sec   (5506 perm/sec)   p_kst 6.334000e-01   p_cons 8.501000e-01   p_joint 9.106000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF304.6_1992_10000_0.6334_0.8501_0.9106.png
                gene_name: ZNF304
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.90 
    ci_joint_bounds_right: 0.92 

Current progress: 36 percent done.
ZNF317
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.018021e-02	ci left: 6.182396e-01	ci right 6.372859e-01	k: 6278	n:10000
KS ci ratio: 6.352252e-03	ci left: 9.712187e-01	ci right 9.775008e-01	k: 9745	n:10000
ZNF317   10000 perm   2 sec   (5559 perm/sec)   p_kst 9.745000e-01   p_cons 6.278000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF317.6_1812_10000_0.9745_0.6278_1.png
                gene_name: ZNF317
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
ZNF333
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.599437e-02	ci left: 2.521161e-01	ci right 2.694235e-01	k: 2607	n:10000
Cons ci ratio: 6.195184e-02	ci left: 2.769584e-01	ci right 2.947665e-01	k: 2858	n:10000
KS ci ratio: 1.002993e-01	ci left: 1.258149e-01	ci right 1.391999e-01	k: 1324	n:10000
ZNF333   10000 perm   2 sec   (5256 perm/sec)   p_kst 1.324000e-01   p_cons 2.858000e-01   p_joint 2.607000e-01

Joint ci ratio: 6.544430e-02	ci left: 1.470995e-01	ci right 1.571019e-01	k: 3041	n:20000
Cons ci ratio: 4.379069e-02	ci left: 2.797437e-01	ci right 2.923185e-01	k: 5720	n:20000
KS ci ratio: 7.131177e-02	ci left: 1.265498e-01	ci right 1.359577e-01	k: 2624	n:20000
ZNF333   20000 perm   4 sec   (4729 perm/sec)   p_kst 1.312000e-01   p_cons 2.860000e-01   p_joint 1.520500e-01

Outputting figure to mutsig2_images.part000000000196/ZNF333.6_2042_20000_0.1312_0.286_0.15205.png
                gene_name: ZNF333
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 39 percent done.
ZNF33A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.265710e-02	ci left: 2.724030e-01	ci right 2.901245e-01	k: 2812	n:10000
Cons ci ratio: 7.959375e-02	ci left: 1.873727e-01	ci right 2.030052e-01	k: 1951	n:10000
KS ci ratio: 6.334593e-02	ci left: 2.680468e-01	ci right 2.856834e-01	k: 2768	n:10000
ZNF33A   10000 perm   2 sec   (5209 perm/sec)   p_kst 2.768000e-01   p_cons 1.951000e-01   p_joint 2.812000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF33A.6_2452_10000_0.2768_0.1951_0.2812.png
                gene_name: ZNF33A
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 40 percent done.
ZNF33B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.256392e-02	ci left: 9.010357e-01	ci right 9.125260e-01	k: 9069	n:10000
KS ci ratio: 2.337403e-02	ci left: 7.289600e-01	ci right 7.463014e-01	k: 7377	n:10000
ZNF33B   10000 perm   2 sec   (5420 perm/sec)   p_kst 7.377000e-01   p_cons 9.069000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF33B.6_2353_10000_0.7377_0.9069_1.png
                gene_name: ZNF33B
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.74 
        ci_ks_bounds_left: 0.73 
       ci_ks_bounds_right: 0.75 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 41 percent done.
ZNF347
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.626875e-02	ci left: 8.460089e-01	ci right 8.599848e-01	k: 8531	n:10000
KS ci ratio: 1.650805e-02	ci left: 8.422384e-01	ci right 8.563575e-01	k: 8494	n:10000
ZNF347   10000 perm   2 sec   (5241 perm/sec)   p_kst 8.494000e-01   p_cons 8.531000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF347.6_2539_10000_0.8494_0.8531_1.png
                gene_name: ZNF347
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
ZNF354B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.030657e-02	ci left: 3.681846e-01	ci right 3.872867e-01	k: 3777	n:10000
Cons ci ratio: 2.343441e-02	ci left: 7.279497e-01	ci right 7.453122e-01	k: 7367	n:10000
KS ci ratio: 9.294744e-02	ci left: 1.439367e-01	ci right 1.580673e-01	k: 1509	n:10000
ZNF354B   10000 perm   2 sec   (5952 perm/sec)   p_kst 1.509000e-01   p_cons 7.367000e-01   p_joint 3.777000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF354B.6_1855_10000_0.1509_0.7367_0.3777.png
                gene_name: ZNF354B
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 44 percent done.
ZNF37A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.454149e-02	ci left: 7.094718e-01	ci right 7.272009e-01	k: 7184	n:10000
Cons ci ratio: 5.564151e-02	ci left: 3.223729e-01	ci right 3.409253e-01	k: 3316	n:10000
KS ci ratio: 1.522923e-02	ci left: 8.621274e-01	ci right 8.754569e-01	k: 8689	n:10000
ZNF37A   10000 perm   2 sec   (5629 perm/sec)   p_kst 8.689000e-01   p_cons 3.316000e-01   p_joint 7.184000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF37A.6_1702_10000_0.8689_0.3316_0.7184.png
                gene_name: ZNF37A
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 45 percent done.
ZNF248
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.185325e-02	ci left: 7.544383e-01	ci right 7.712083e-01	k: 7629	n:10000
Cons ci ratio: 3.133409e-02	ci left: 6.004598e-01	ci right 6.196761e-01	k: 6101	n:10000
KS ci ratio: 2.750272e-02	ci left: 6.607862e-01	ci right 6.793147e-01	k: 6701	n:10000
ZNF248   10000 perm   2 sec   (5917 perm/sec)   p_kst 6.701000e-01   p_cons 6.101000e-01   p_joint 7.629000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF248.5_1756_10000_0.6701_0.6101_0.7629.png
                gene_name: ZNF248
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 46 percent done.
ZNF281
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.406407e-02	ci left: 1.710391e-01	ci right 1.861486e-01	k: 1785	n:10000
Cons ci ratio: 2.443843e-02	ci left: 7.111875e-01	ci right 7.288841e-01	k: 7201	n:10000
KS ci ratio: 1.172700e-01	ci left: 9.457666e-02	ci right 1.064572e-01	k: 1004	n:10000
ZNF281   10000 perm   2 sec   (5088 perm/sec)   p_kst 1.004000e-01   p_cons 7.201000e-01   p_joint 1.785000e-01

Joint ci ratio: 5.824552e-02	ci left: 1.792442e-01	ci right 1.900476e-01	k: 3692	n:20000
Cons ci ratio: 1.750186e-02	ci left: 7.086376e-01	ci right 7.211999e-01	k: 14299	n:20000
KS ci ratio: 8.068851e-02	ci left: 1.012751e-01	ci right 1.098399e-01	k: 2110	n:20000
ZNF281   20000 perm   4 sec   (4617 perm/sec)   p_kst 1.055000e-01   p_cons 7.149500e-01   p_joint 1.846000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF281.5_2692_20000_0.1055_0.71495_0.1846.png
                gene_name: ZNF281
               theta_stop: 0.081 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 48 percent done.
ZNF285
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.667538e-02	ci left: 1.623899e-01	ci right 1.772030e-01	k: 1697	n:10000
Cons ci ratio: 2.219129e-02	ci left: 7.487731e-01	ci right 7.656768e-01	k: 7573	n:10000
KS ci ratio: 1.723172e-01	ci left: 4.494682e-02	ci right 5.351821e-02	k: 491	n:10000
ZNF285   10000 perm   2 sec   (5711 perm/sec)   p_kst 4.910000e-02   p_cons 7.573000e-01   p_joint 1.697000e-01

Joint ci ratio: 5.981036e-02	ci left: 1.714856e-01	ci right 1.821085e-01	k: 3535	n:20000
Cons ci ratio: 1.573224e-02	ci left: 7.503385e-01	ci right 7.622869e-01	k: 15127	n:20000
KS ci ratio: 1.261564e-01	ci left: 4.313792e-02	ci right 4.899497e-02	k: 920	n:20000
ZNF285   20000 perm   4 sec   (5012 perm/sec)   p_kst 4.600000e-02   p_cons 7.563500e-01   p_joint 1.767500e-01

Joint ci ratio: 5.519424e-02	ci left: 1.399462e-01	ci right 1.479229e-01	k: 4317	n:30000
Cons ci ratio: 1.288890e-02	ci left: 7.501926e-01	ci right 7.599579e-01	k: 22653	n:30000
KS ci ratio: 1.031441e-01	ci left: 4.355936e-02	ci right 4.832908e-02	k: 1377	n:30000
ZNF285   30000 perm   6 sec   (4813 perm/sec)   p_kst 4.590000e-02   p_cons 7.551000e-01   p_joint 1.439000e-01

Joint ci ratio: 5.030423e-02	ci left: 1.284746e-01	ci right 1.351290e-01	k: 5271	n:40000
Cons ci ratio: 1.191764e-02	ci left: 7.256956e-01	ci right 7.344210e-01	k: 29203	n:40000
KS ci ratio: 8.913099e-02	ci left: 4.406547e-02	ci right 4.820074e-02	k: 1844	n:40000
ZNF285   40000 perm   9 sec   (4671 perm/sec)   p_kst 4.610000e-02   p_cons 7.300750e-01   p_joint 1.317750e-01

Outputting figure to mutsig2_images.part000000000196/ZNF285.5_1785_40000_0.0461_0.73008_0.13178.png
                gene_name: ZNF285
               theta_stop: 0.089 
                    nperm: 40000 
                     p_ks: 0.046 
        ci_ks_bounds_left: 0.044 
       ci_ks_bounds_right: 0.048 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 49 percent done.
ZNF311
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.603282e-02	ci left: 3.192957e-01	ci right 3.378043e-01	k: 3285	n:10000
Cons ci ratio: 3.147915e-02	ci left: 5.982508e-01	ci right 6.174863e-01	k: 6079	n:10000
KS ci ratio: 7.621287e-02	ci left: 2.011651e-01	ci right 2.172047e-01	k: 2091	n:10000
ZNF311   10000 perm   2 sec   (5785 perm/sec)   p_kst 2.091000e-01   p_cons 6.079000e-01   p_joint 3.285000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF311.5_2025_10000_0.2091_0.6079_0.3285.png
                gene_name: ZNF311
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 50 percent done.
ZNF32
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.074492e-02	ci left: 2.265204e-01	ci right 2.432343e-01	k: 2348	n:10000
Cons ci ratio: 2.210680e-02	ci left: 7.501892e-01	ci right 7.670598e-01	k: 7587	n:10000
KS ci ratio: 1.422220e-01	ci left: 6.555836e-02	ci right 7.569349e-02	k: 705	n:10000
ZNF32   10000 perm   2 sec   (5968 perm/sec)   p_kst 7.050000e-02   p_cons 7.587000e-01   p_joint 2.348000e-01

Joint ci ratio: 4.684154e-02	ci left: 2.532366e-01	ci right 2.654334e-01	k: 5186	n:20000
Cons ci ratio: 1.598613e-02	ci left: 7.443409e-01	ci right 7.563862e-01	k: 15008	n:20000
KS ci ratio: 1.029821e-01	ci left: 6.406102e-02	ci right 7.106534e-02	k: 1350	n:20000
ZNF32   20000 perm   4 sec   (5425 perm/sec)   p_kst 6.750000e-02   p_cons 7.504000e-01   p_joint 2.593000e-01

Joint ci ratio: 4.162537e-02	ci left: 2.233947e-01	ci right 2.329247e-01	k: 6844	n:30000
Cons ci ratio: 1.242863e-02	ci left: 7.634831e-01	ci right 7.730649e-01	k: 23049	n:30000
KS ci ratio: 8.527588e-02	ci left: 6.298724e-02	ci right 6.863053e-02	k: 1973	n:30000
ZNF32   30000 perm   6 sec   (5189 perm/sec)   p_kst 6.576667e-02   p_cons 7.683000e-01   p_joint 2.281333e-01

Outputting figure to mutsig2_images.part000000000196/ZNF32.5_830_30000_0.065767_0.7683_0.22813.png
                gene_name: ZNF32
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.066 
        ci_ks_bounds_left: 0.063 
       ci_ks_bounds_right: 0.069 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 51 percent done.
ZNF365
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.742576e-02	ci left: 3.961543e-01	ci right 4.155006e-01	k: 4058	n:10000
Cons ci ratio: 1.046834e-02	ci left: 9.284392e-01	ci right 9.383065e-01	k: 9335	n:10000
KS ci ratio: 6.633841e-02	ci left: 2.501382e-01	ci right 2.674026e-01	k: 2587	n:10000
ZNF365   10000 perm   2 sec   (6217 perm/sec)   p_kst 2.587000e-01   p_cons 9.335000e-01   p_joint 4.058000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF365.5_2153_10000_0.2587_0.9335_0.4058.png
                gene_name: ZNF365
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 52 percent done.
ZNF25
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.299920e-02	ci left: 5.754698e-01	ci right 5.948805e-01	k: 5852	n:10000
Cons ci ratio: 2.362165e-02	ci left: 7.248183e-01	ci right 7.422455e-01	k: 7336	n:10000
KS ci ratio: 5.856484e-02	ci left: 3.002475e-01	ci right 3.184636e-01	k: 3093	n:10000
ZNF25   10000 perm   2 sec   (6193 perm/sec)   p_kst 3.093000e-01   p_cons 7.336000e-01   p_joint 5.852000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF25.4_1391_10000_0.3093_0.7336_0.5852.png
                gene_name: ZNF25
               theta_stop: 0.059 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.59 

Current progress: 54 percent done.
ZNF251
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.259309e-02	ci left: 5.814892e-01	ci right 6.008577e-01	k: 5912	n:10000
Cons ci ratio: 8.098835e-02	ci left: 1.820569e-01	ci right 1.975242e-01	k: 1897	n:10000
KS ci ratio: 1.195230e-02	ci left: 9.093624e-01	ci right 9.203945e-01	k: 9150	n:10000
ZNF251   10000 perm   2 sec   (5638 perm/sec)   p_kst 9.150000e-01   p_cons 1.897000e-01   p_joint 5.912000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF251.4_2032_10000_0.915_0.1897_0.5912.png
                gene_name: ZNF251
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.92 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 55 percent done.
ZNF253
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.584439e-02	ci left: 6.878865e-01	ci right 7.059987e-01	k: 6970	n:10000
Cons ci ratio: 4.280852e-02	ci left: 4.462022e-01	ci right 4.658234e-01	k: 4560	n:10000
KS ci ratio: 3.558222e-02	ci left: 5.383830e-01	ci right 5.579889e-01	k: 5482	n:10000
ZNF253   10000 perm   2 sec   (5757 perm/sec)   p_kst 5.482000e-01   p_cons 4.560000e-01   p_joint 6.970000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF253.4_1516_10000_0.5482_0.456_0.697.png
                gene_name: ZNF253
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 56 percent done.
ZNF254
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.519813e-02	ci left: 4.194707e-01	ci right 4.389705e-01	k: 4292	n:10000
Cons ci ratio: 5.305884e-02	ci left: 3.436272e-01	ci right 3.624585e-01	k: 3530	n:10000
KS ci ratio: 5.147127e-02	ci left: 3.575431e-01	ci right 3.765344e-01	k: 3670	n:10000
ZNF254   10000 perm   2 sec   (5610 perm/sec)   p_kst 3.670000e-01   p_cons 3.530000e-01   p_joint 4.292000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF254.4_1996_10000_0.367_0.353_0.4292.png
                gene_name: ZNF254
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 57 percent done.
ZNF263
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.035355e-02	ci left: 2.284954e-01	ci right 2.452581e-01	k: 2368	n:10000
Cons ci ratio: 7.575520e-02	ci left: 2.031366e-01	ci right 2.192320e-01	k: 2111	n:10000
KS ci ratio: 6.778681e-02	ci left: 2.420311e-01	ci right 2.591144e-01	k: 2505	n:10000
ZNF263   10000 perm   2 sec   (5905 perm/sec)   p_kst 2.505000e-01   p_cons 2.111000e-01   p_joint 2.368000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF263.4_2076_10000_0.2505_0.2111_0.2368.png
                gene_name: ZNF263
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 59 percent done.
ZNF280B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.203560e-01	ci left: 9.009981e-02	ci right 1.017368e-01	k: 958	n:10000
Cons ci ratio: 1.302908e-01	ci left: 7.756782e-02	ci right 8.847654e-02	k: 829	n:10000
KS ci ratio: 1.227782e-01	ci left: 8.679344e-02	ci right 9.824521e-02	k: 924	n:10000
ZNF280B   10000 perm   2 sec   (6097 perm/sec)   p_kst 9.240000e-02   p_cons 8.290000e-02   p_joint 9.580000e-02

Joint ci ratio: 8.028516e-02	ci left: 1.022081e-01	ci right 1.108067e-01	k: 2129	n:20000
Cons ci ratio: 9.076681e-02	ci left: 8.141531e-02	ci right 8.920575e-02	k: 1705	n:20000
KS ci ratio: 8.692261e-02	ci left: 8.827397e-02	ci right 9.634501e-02	k: 1845	n:20000
ZNF280B   20000 perm   4 sec   (5432 perm/sec)   p_kst 9.225000e-02   p_cons 8.525000e-02   p_joint 1.064500e-01

Outputting figure to mutsig2_images.part000000000196/ZNF280B.4_1636_20000_0.09225_0.08525_0.10645.png
                gene_name: ZNF280B
               theta_stop: 0.091 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.085 
      ci_cons_bounds_left: 0.081 
     ci_cons_bounds_right: 0.089 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.10 
    ci_joint_bounds_right: 0.11 

Current progress: 60 percent done.
ZNF280D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.385259e-02	ci left: 2.116174e-01	ci right 2.279461e-01	k: 2197	n:10000
Cons ci ratio: 2.767080e-02	ci left: 6.580680e-01	ci right 6.766344e-01	k: 6674	n:10000
KS ci ratio: 9.145415e-02	ci left: 1.480561e-01	ci right 1.623454e-01	k: 1551	n:10000
ZNF280D   10000 perm   2 sec   (5159 perm/sec)   p_kst 1.551000e-01   p_cons 6.674000e-01   p_joint 2.197000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF280D.4_3116_10000_0.1551_0.6674_0.2197.png
                gene_name: ZNF280D
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.23 

Current progress: 61 percent done.
ZNF320
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.529973e-02	ci left: 4.183742e-01	ci right 4.378677e-01	k: 4281	n:10000
Cons ci ratio: 1.213559e-02	ci left: 9.068938e-01	ci right 9.180646e-01	k: 9126	n:10000
KS ci ratio: 5.567918e-02	ci left: 3.220751e-01	ci right 3.406233e-01	k: 3313	n:10000
ZNF320   10000 perm   2 sec   (5937 perm/sec)   p_kst 3.313000e-01   p_cons 9.126000e-01   p_joint 4.281000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF320.4_1542_10000_0.3313_0.9126_0.4281.png
                gene_name: ZNF320
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 62 percent done.
ZNF34
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.196797e-02	ci left: 7.525160e-01	ci right 7.693318e-01	k: 7610	n:10000
Cons ci ratio: 1.949659e-02	ci left: 7.937479e-01	ci right 8.094760e-01	k: 8017	n:10000
KS ci ratio: 2.873724e-02	ci left: 6.409613e-01	ci right 6.597510e-01	k: 6504	n:10000
ZNF34   10000 perm   2 sec   (5809 perm/sec)   p_kst 6.504000e-01   p_cons 8.017000e-01   p_joint 7.610000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF34.4_1703_10000_0.6504_0.8017_0.761.png
                gene_name: ZNF34
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 64 percent done.
ZNF362
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.459254e-01	ci left: 6.236946e-02	ci right 7.228440e-02	k: 672	n:10000
Cons ci ratio: 4.837274e-02	ci left: 3.866946e-01	ci right 4.059658e-01	k: 3963	n:10000
KS ci ratio: 2.043162e-01	ci left: 3.186407e-02	ci right 3.920972e-02	k: 354	n:10000
ZNF362   10000 perm   2 sec   (6044 perm/sec)   p_kst 3.540000e-02   p_cons 3.963000e-01   p_joint 6.720000e-02

Joint ci ratio: 1.102495e-01	ci left: 5.616335e-02	ci right 6.276545e-02	k: 1188	n:20000
Cons ci ratio: 3.434060e-02	ci left: 3.876674e-01	ci right 4.012633e-01	k: 7889	n:20000
KS ci ratio: 1.390823e-01	ci left: 3.553751e-02	ci right 4.089781e-02	k: 763	n:20000
ZNF362   20000 perm   4 sec   (5402 perm/sec)   p_kst 3.815000e-02   p_cons 3.944500e-01   p_joint 5.940000e-02

Joint ci ratio: 7.911975e-02	ci left: 7.263311e-02	ci right 7.864938e-02	k: 2268	n:30000
Cons ci ratio: 2.788109e-02	ci left: 3.916232e-01	ci right 4.027300e-01	k: 11915	n:30000
KS ci ratio: 1.131511e-01	ci left: 3.628610e-02	ci right 4.067052e-02	k: 1153	n:30000
ZNF362   30000 perm   6 sec   (5154 perm/sec)   p_kst 3.843333e-02   p_cons 3.971667e-01   p_joint 7.560000e-02

Joint ci ratio: 8.126252e-02	ci left: 5.273666e-02	ci right 5.722822e-02	k: 2198	n:40000
Cons ci ratio: 2.410918e-02	ci left: 3.930984e-01	ci right 4.027164e-01	k: 15916	n:40000
KS ci ratio: 9.864961e-02	ci left: 3.609860e-02	ci right 3.986885e-02	k: 1518	n:40000
ZNF362   40000 perm   8 sec   (4997 perm/sec)   p_kst 3.795000e-02   p_cons 3.979000e-01   p_joint 5.495000e-02

Outputting figure to mutsig2_images.part000000000196/ZNF362.4_1295_40000_0.03795_0.3979_0.05495.png
                gene_name: ZNF362
               theta_stop: 0.099 
                    nperm: 40000 
                     p_ks: 0.038 
        ci_ks_bounds_left: 0.036 
       ci_ks_bounds_right: 0.040 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.055 
     ci_joint_bounds_left: 0.053 
    ci_joint_bounds_right: 0.057 

Current progress: 65 percent done.
ZNF366
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.224924e-02	ci left: 9.053515e-01	ci right 9.166077e-01	k: 9111	n:10000
KS ci ratio: 1.244464e-02	ci left: 9.026794e-01	ci right 9.140814e-01	k: 9085	n:10000
ZNF366   10000 perm   2 sec   (5509 perm/sec)   p_kst 9.085000e-01   p_cons 9.111000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF366.4_2251_10000_0.9085_0.9111_1.png
                gene_name: ZNF366
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 66 percent done.
ZNF385A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.708612e-01	ci left: 4.571402e-02	ci right 5.435051e-02	k: 499	n:10000
Cons ci ratio: 6.578961e-02	ci left: 2.533030e-01	ci right 2.706359e-01	k: 2619	n:10000
KS ci ratio: 2.228902e-01	ci left: 2.664945e-02	ci right 3.342800e-02	k: 299	n:10000
ZNF385A   10000 perm   1 sec   (6874 perm/sec)   p_kst 2.990000e-02   p_cons 2.619000e-01   p_joint 4.990000e-02

Joint ci ratio: 1.304457e-01	ci left: 4.037551e-02	ci right 4.605825e-02	k: 863	n:20000
Cons ci ratio: 4.456441e-02	ci left: 2.726923e-01	ci right 2.851720e-01	k: 5578	n:20000
KS ci ratio: 1.634610e-01	ci left: 2.566144e-02	ci right 3.027716e-02	k: 558	n:20000
ZNF385A   20000 perm   3 sec   (6086 perm/sec)   p_kst 2.790000e-02   p_cons 2.789000e-01   p_joint 4.315000e-02

Joint ci ratio: 1.351760e-01	ci left: 2.542076e-02	ci right 2.913821e-02	k: 817	n:30000
Cons ci ratio: 3.628301e-02	ci left: 2.749903e-01	ci right 2.851856e-01	k: 8402	n:30000
KS ci ratio: 1.360332e-01	ci left: 2.509845e-02	ci right 2.879393e-02	k: 807	n:30000
ZNF385A   30000 perm   5 sec   (5763 perm/sec)   p_kst 2.690000e-02   p_cons 2.800667e-01   p_joint 2.723333e-02

Joint ci ratio: 1.037243e-01	ci left: 3.268405e-02	ci right 3.628394e-02	k: 1378	n:40000
Cons ci ratio: 3.141425e-02	ci left: 2.757776e-01	ci right 2.846043e-01	k: 11207	n:40000
KS ci ratio: 1.173801e-01	ci left: 2.553066e-02	ci right 2.873849e-02	k: 1084	n:40000
ZNF385A   40000 perm   7 sec   (5590 perm/sec)   p_kst 2.710000e-02   p_cons 2.801750e-01   p_joint 3.445000e-02

Joint ci ratio: 8.679017e-02	ci left: 3.749614e-02	ci right 4.091762e-02	k: 1959	n:50000
Cons ci ratio: 2.801858e-02	ci left: 2.773816e-01	ci right 2.852838e-01	k: 14066	n:50000
KS ci ratio: 1.055596e-01	ci left: 2.542144e-02	ci right 2.827385e-02	k: 1341	n:50000
ZNF385A   50000 perm   9 sec   (5389 perm/sec)   p_kst 2.682000e-02   p_cons 2.813200e-01   p_joint 3.918000e-02

Joint ci ratio: 7.606860e-02	ci left: 4.076880e-02	ci right 4.400898e-02	k: 2542	n:60000
Cons ci ratio: 2.557145e-02	ci left: 2.778208e-01	ci right 2.850337e-01	k: 16885	n:60000
KS ci ratio: 9.634402e-02	ci left: 2.555491e-02	ci right 2.815779e-02	k: 1610	n:60000
ZNF385A   60000 perm   11 sec   (5252 perm/sec)   p_kst 2.683333e-02   p_cons 2.814167e-01   p_joint 4.236667e-02

Outputting figure to mutsig2_images.part000000000196/ZNF385A.4_1193_60000_0.026833_0.28142_0.042367.png
                gene_name: ZNF385A
               theta_stop: 0.096 
                    nperm: 60000 
                     p_ks: 0.027 
        ci_ks_bounds_left: 0.026 
       ci_ks_bounds_right: 0.028 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.042 
     ci_joint_bounds_left: 0.041 
    ci_joint_bounds_right: 0.044 

Current progress: 68 percent done.
ZNF385B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.877516e-02	ci left: 6.403578e-01	ci right 6.591549e-01	k: 6498	n:10000
Cons ci ratio: 3.140657e-02	ci left: 5.993553e-01	ci right 6.185812e-01	k: 6090	n:10000
KS ci ratio: 3.549612e-02	ci left: 5.395849e-01	ci right 5.591863e-01	k: 5494	n:10000
ZNF385B   10000 perm   2 sec   (6309 perm/sec)   p_kst 5.494000e-01   p_cons 6.090000e-01   p_joint 6.498000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF385B.4_1477_10000_0.5494_0.609_0.6498.png
                gene_name: ZNF385B
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 69 percent done.
ZNF238
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.786852e-02	ci left: 5.073522e-01	ci right 5.270378e-01	k: 5172	n:10000
KS ci ratio: 3.681323e-02	ci left: 5.214615e-01	ci right 5.411203e-01	k: 5313	n:10000
ZNF238   10000 perm   2 sec   (6600 perm/sec)   p_kst 5.313000e-01   p_cons 5.172000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF238.3_1604_10000_0.5313_0.5172_1.png
                gene_name: ZNF238
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 70 percent done.
ZNF260
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.832774e-02	ci left: 6.475005e-01	ci right 6.662080e-01	k: 6569	n:10000
KS ci ratio: 1.273416e-02	ci left: 8.986739e-01	ci right 9.102893e-01	k: 9046	n:10000
ZNF260   10000 perm   1 sec   (6713 perm/sec)   p_kst 9.046000e-01   p_cons 6.569000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF260.3_1243_10000_0.9046_0.6569_1.png
                gene_name: ZNF260
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 71 percent done.
ZNF273
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.215927e-03	ci left: 9.538829e-01	ci right 9.618476e-01	k: 9580	n:10000
Cons ci ratio: 4.038788e-02	ci left: 4.751602e-01	ci right 4.948486e-01	k: 4850	n:10000
KS ci ratio: 3.983416e-02	ci left: 4.820550e-01	ci right 5.017497e-01	k: 4919	n:10000
ZNF273   10000 perm   2 sec   (6075 perm/sec)   p_kst 4.919000e-01   p_cons 4.850000e-01   p_joint 9.580000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF273.3_1726_10000_0.4919_0.485_0.958.png
                gene_name: ZNF273
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.95 
    ci_joint_bounds_right: 0.96 

Current progress: 72 percent done.
ZNF275
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.027488e-02	ci left: 4.765590e-01	ci right 4.962490e-01	k: 4864	n:10000
Cons ci ratio: 1.722442e-02	ci left: 8.308338e-01	ci right 8.453686e-01	k: 8382	n:10000
KS ci ratio: 6.042473e-02	ci left: 2.871625e-01	ci right 3.051564e-01	k: 2961	n:10000
ZNF275   10000 perm   2 sec   (6568 perm/sec)   p_kst 2.961000e-01   p_cons 8.382000e-01   p_joint 4.864000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF275.3_1006_10000_0.2961_0.8382_0.4864.png
                gene_name: ZNF275
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 74 percent done.
ZNF280A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.830206e-02	ci left: 3.873915e-01	ci right 4.066685e-01	k: 3970	n:10000
Cons ci ratio: 2.869303e-02	ci left: 6.416654e-01	ci right 6.604465e-01	k: 6511	n:10000
KS ci ratio: 6.578961e-02	ci left: 2.533030e-01	ci right 2.706359e-01	k: 2619	n:10000
ZNF280A   10000 perm   2 sec   (5989 perm/sec)   p_kst 2.619000e-01   p_cons 6.511000e-01   p_joint 3.970000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF280A.3_1633_10000_0.2619_0.6511_0.397.png
                gene_name: ZNF280A
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 75 percent done.
ZNF282
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.130635e-01	ci left: 1.012015e-01	ci right 1.134283e-01	k: 1072	n:10000
Cons ci ratio: 5.994992e-02	ci left: 2.904329e-01	ci right 3.084840e-01	k: 2994	n:10000
KS ci ratio: 1.446619e-01	ci left: 6.343206e-02	ci right 7.342113e-02	k: 683	n:10000
ZNF282   10000 perm   2 sec   (5869 perm/sec)   p_kst 6.830000e-02   p_cons 2.994000e-01   p_joint 1.072000e-01

Joint ci ratio: 7.288606e-02	ci left: 1.217258e-01	ci right 1.309832e-01	k: 2526	n:20000
Cons ci ratio: 4.209500e-02	ci left: 2.960387e-01	ci right 3.088188e-01	k: 6048	n:20000
KS ci ratio: 1.007218e-01	ci left: 6.684339e-02	ci right 7.398211e-02	k: 1407	n:20000
ZNF282   20000 perm   4 sec   (5259 perm/sec)   p_kst 7.035000e-02   p_cons 3.024000e-01   p_joint 1.263000e-01

Joint ci ratio: 6.084644e-02	ci left: 1.178231e-01	ci right 1.252503e-01	k: 3645	n:30000
Cons ci ratio: 3.433384e-02	ci left: 2.976697e-01	ci right 3.081019e-01	k: 9086	n:30000
KS ci ratio: 8.259776e-02	ci left: 6.694170e-02	ci right 7.274194e-02	k: 2094	n:30000
ZNF282   30000 perm   6 sec   (5020 perm/sec)   p_kst 6.980000e-02   p_cons 3.028667e-01   p_joint 1.215000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF282.3_2048_30000_0.0698_0.30287_0.1215.png
                gene_name: ZNF282
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.070 
        ci_ks_bounds_left: 0.067 
       ci_ks_bounds_right: 0.073 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 76 percent done.
ZNF3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.386890e-02	ci left: 8.824747e-01	ci right 8.948979e-01	k: 8888	n:10000
KS ci ratio: 2.276448e-02	ci left: 7.391670e-01	ci right 7.562885e-01	k: 7478	n:10000
ZNF3   10000 perm   2 sec   (6134 perm/sec)   p_kst 7.478000e-01   p_cons 8.888000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF3.3_1486_10000_0.7478_0.8888_1.png
                gene_name: ZNF3
               theta_stop: 0.023 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.74 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 78 percent done.
ZNF300
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.874877e-02	ci left: 3.830114e-01	ci right 4.022512e-01	k: 3926	n:10000
Cons ci ratio: 5.036011e-02	ci left: 3.676872e-01	ci right 3.867843e-01	k: 3772	n:10000
KS ci ratio: 6.081832e-02	ci left: 2.844871e-01	ci right 3.024334e-01	k: 2934	n:10000
ZNF300   10000 perm   2 sec   (5316 perm/sec)   p_kst 2.934000e-01   p_cons 3.772000e-01   p_joint 3.926000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF300.3_1883_10000_0.2934_0.3772_0.3926.png
                gene_name: ZNF300
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 79 percent done.
ZNF322B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.380558e-02	ci left: 4.348278e-01	ci right 4.544044e-01	k: 4446	n:10000
Cons ci ratio: 2.455362e-02	ci left: 7.092699e-01	ci right 7.270028e-01	k: 7182	n:10000
KS ci ratio: 7.532587e-02	ci left: 2.050098e-01	ci right 2.211576e-01	k: 2130	n:10000
ZNF322B   10000 perm   2 sec   (6223 perm/sec)   p_kst 2.130000e-01   p_cons 7.182000e-01   p_joint 4.446000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF322B.3_1213_10000_0.213_0.7182_0.4446.png
                gene_name: ZNF322B
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 80 percent done.
ZNF330
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.152503e-02	ci left: 9.150246e-01	ci right 9.257290e-01	k: 9205	n:10000
Cons ci ratio: 6.807679e-02	ci left: 2.404497e-01	ci right 2.574968e-01	k: 2489	n:10000
KS ci ratio: 5.060454e-03	ci left: 9.810225e-01	ci right 9.860902e-01	k: 9837	n:10000
ZNF330   10000 perm   2 sec   (6373 perm/sec)   p_kst 9.837000e-01   p_cons 2.489000e-01   p_joint 9.205000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF330.3_999_10000_0.9837_0.2489_0.9205.png
                gene_name: ZNF330
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 81 percent done.
ZNF346
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.054030e-01	ci left: 1.150598e-01	ci right 1.279615e-01	k: 1214	n:10000
Cons ci ratio: 1.434278e-01	ci left: 6.449503e-02	ci right 7.455749e-02	k: 694	n:10000
KS ci ratio: 7.415534e-02	ci left: 2.102365e-01	ci right 2.265279e-01	k: 2183	n:10000
ZNF346   10000 perm   2 sec   (6543 perm/sec)   p_kst 2.183000e-01   p_cons 6.940000e-02   p_joint 1.214000e-01

Joint ci ratio: 8.409164e-02	ci left: 9.386410e-02	ci right 1.021532e-01	k: 1959	n:20000
Cons ci ratio: 1.019341e-01	ci left: 6.532996e-02	ci right 7.239601e-02	k: 1376	n:20000
KS ci ratio: 5.311363e-02	ci left: 2.083329e-01	ci right 2.197503e-01	k: 4280	n:20000
ZNF346   20000 perm   3 sec   (5828 perm/sec)   p_kst 2.140000e-01   p_cons 6.880000e-02   p_joint 9.795000e-02

Joint ci ratio: 6.987964e-02	ci left: 9.160626e-02	ci right 9.827242e-02	k: 2847	n:30000
Cons ci ratio: 8.296020e-02	ci left: 6.638595e-02	ci right 7.216447e-02	k: 2077	n:30000
KS ci ratio: 4.374234e-02	ci left: 2.065267e-01	ci right 2.157960e-01	k: 6334	n:30000
ZNF346   30000 perm   5 sec   (5539 perm/sec)   p_kst 2.111333e-01   p_cons 6.923333e-02   p_joint 9.490000e-02

Outputting figure to mutsig2_images.part000000000196/ZNF346.3_913_30000_0.21113_0.069233_0.0949.png
                gene_name: ZNF346
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.095 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.098 

Current progress: 82 percent done.
ZNF367
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.052170e-01	ci left: 3.157898e-02	ci right 3.889501e-02	k: 351	n:10000
Cons ci ratio: 4.884054e-01	ci left: 4.844389e-03	ci right 8.053335e-03	k: 63	n:10000
KS ci ratio: 7.757470e-02	ci left: 1.954493e-01	ci right 2.113238e-01	k: 2033	n:10000
ZNF367   10000 perm   2 sec   (6425 perm/sec)   p_kst 2.033000e-01   p_cons 6.300000e-03   p_joint 3.510000e-02

Joint ci ratio: 1.192588e-01	ci left: 4.818582e-02	ci right 5.434548e-02	k: 1024	n:20000
Cons ci ratio: 2.800644e-01	ci left: 8.341806e-03	ci right 1.110354e-02	k: 193	n:20000
KS ci ratio: 5.517796e-02	ci left: 1.959101e-01	ci right 2.070768e-01	k: 4029	n:20000
ZNF367   20000 perm   3 sec   (5731 perm/sec)   p_kst 2.014500e-01   p_cons 9.650000e-03   p_joint 5.120000e-02

Joint ci ratio: 1.029875e-01	ci left: 4.368940e-02	ci right 4.846567e-02	k: 1381	n:30000
Cons ci ratio: 2.267148e-01	ci left: 8.747748e-03	ci right 1.101535e-02	k: 295	n:30000
KS ci ratio: 4.545811e-02	ci left: 1.940983e-01	ci right 2.031602e-01	k: 5958	n:30000
ZNF367   30000 perm   5 sec   (5458 perm/sec)   p_kst 1.986000e-01   p_cons 9.833333e-03   p_joint 4.603333e-02

Joint ci ratio: 9.494232e-02	ci left: 3.893109e-02	ci right 4.283592e-02	k: 1634	n:40000
Cons ci ratio: 1.940375e-01	ci left: 9.119511e-03	ci right 1.110258e-02	k: 403	n:40000
KS ci ratio: 3.946820e-02	ci left: 1.939059e-01	ci right 2.017380e-01	k: 7912	n:40000
ZNF367   40000 perm   8 sec   (5263 perm/sec)   p_kst 1.978000e-01   p_cons 1.007500e-02   p_joint 4.085000e-02

Joint ci ratio: 9.607769e-02	ci left: 3.066987e-02	ci right 3.378475e-02	k: 1610	n:50000
Cons ci ratio: 1.732067e-01	ci left: 9.261239e-03	ci right 1.103633e-02	k: 506	n:50000
KS ci ratio: 3.514045e-02	ci left: 1.957663e-01	ci right 2.027886e-01	k: 9963	n:50000
ZNF367   50000 perm   10 sec   (5142 perm/sec)   p_kst 1.992600e-01   p_cons 1.012000e-02   p_joint 3.220000e-02

Joint ci ratio: 8.388568e-02	ci left: 3.364165e-02	ci right 3.660354e-02	k: 2106	n:60000
Cons ci ratio: 1.576451e-01	ci left: 9.395429e-03	ci right 1.101914e-02	k: 611	n:60000
KS ci ratio: 3.209515e-02	ci left: 1.959111e-01	ci right 2.023180e-01	k: 11946	n:60000
ZNF367   60000 perm   12 sec   (5032 perm/sec)   p_kst 1.991000e-01   p_cons 1.018333e-02   p_joint 3.510000e-02

Joint ci ratio: 7.391379e-02	ci left: 3.719897e-02	ci right 4.006800e-02	k: 2703	n:70000
Cons ci ratio: 1.460546e-01	ci left: 9.441334e-03	ci right 1.094254e-02	k: 712	n:70000
KS ci ratio: 2.964290e-02	ci left: 1.969143e-01	ci right 2.028535e-01	k: 13991	n:70000
ZNF367   70000 perm   14 sec   (4929 perm/sec)   p_kst 1.998714e-01   p_cons 1.017143e-02   p_joint 3.861429e-02

Joint ci ratio: 6.239870e-02	ci left: 4.554364e-02	ci right 4.848932e-02	k: 3760	n:80000
Cons ci ratio: 1.359371e-01	ci left: 9.587756e-03	ci right 1.099810e-02	k: 822	n:80000
KS ci ratio: 2.769146e-02	ci left: 1.975313e-01	ci right 2.030905e-01	k: 16024	n:80000
ZNF367   80000 perm   17 sec   (4829 perm/sec)   p_kst 2.003000e-01   p_cons 1.027500e-02   p_joint 4.700000e-02

Joint ci ratio: 6.573434e-02	ci left: 3.676023e-02	ci right 3.926966e-02	k: 3420	n:90000
Cons ci ratio: 1.268457e-01	ci left: 9.833565e-03	ci right 1.117604e-02	k: 944	n:90000
KS ci ratio: 2.611603e-02	ci left: 1.975899e-01	ci right 2.028295e-01	k: 18018	n:90000
ZNF367   90000 perm   19 sec   (4723 perm/sec)   p_kst 2.002000e-01   p_cons 1.048889e-02   p_joint 3.800000e-02

Joint ci ratio: 6.285358e-02	ci left: 3.626198e-02	ci right 3.862495e-02	k: 3743	n:100000
Cons ci ratio: 1.203944e-01	ci left: 9.858067e-03	ci right 1.113057e-02	k: 1048	n:100000
KS ci ratio: 2.480692e-02	ci left: 1.973255e-01	ci right 2.022919e-01	k: 19980	n:100000
ZNF367   100000 perm   22 sec   (4624 perm/sec)   p_kst 1.998000e-01   p_cons 1.048000e-02   p_joint 3.743000e-02

Joint ci ratio: 5.448853e-02	ci left: 4.371062e-02	ci right 4.616799e-02	k: 4942	n:110000
Cons ci ratio: 1.419831e-01	ci left: 6.392996e-03	ci right 7.378728e-03	k: 756	n:110000
KS ci ratio: 2.364179e-02	ci left: 1.975853e-01	ci right 2.023215e-01	k: 21994	n:110000
ZNF367   110000 perm   24 sec   (4531 perm/sec)   p_kst 1.999455e-01   p_cons 6.872727e-03   p_joint 4.492727e-02

Joint ci ratio: 5.560612e-02	ci left: 3.865979e-02	ci right 4.087919e-02	k: 4771	n:120000
Cons ci ratio: 1.359235e-01	ci left: 6.415266e-03	ci right 7.358801e-03	k: 825	n:120000
KS ci ratio: 2.261736e-02	ci left: 1.979391e-01	ci right 2.024754e-01	k: 24024	n:120000
ZNF367   120000 perm   27 sec   (4443 perm/sec)   p_kst 2.002000e-01   p_cons 6.875000e-03   p_joint 3.975833e-02

Joint ci ratio: 6.049863e-02	ci left: 3.033733e-02	ci right 3.223750e-02	k: 4066	n:130000
Cons ci ratio: 1.306523e-01	ci left: 6.427425e-03	ci right 7.333243e-03	k: 893	n:130000
KS ci ratio: 2.172697e-02	ci left: 1.980736e-01	ci right 2.024321e-01	k: 26032	n:130000
ZNF367   130000 perm   30 sec   (4354 perm/sec)   p_kst 2.002462e-01   p_cons 6.869231e-03   p_joint 3.127692e-02

Joint ci ratio: 5.039900e-02	ci left: 4.037652e-02	ci right 4.247109e-02	k: 5798	n:140000
Cons ci ratio: 1.268834e-01	ci left: 6.341595e-03	ci right 7.207594e-03	k: 947	n:140000
KS ci ratio: 2.092336e-02	ci left: 1.983556e-01	ci right 2.025568e-01	k: 28063	n:140000
ZNF367   140000 perm   33 sec   (4278 perm/sec)   p_kst 2.004500e-01   p_cons 6.764286e-03   p_joint 4.141429e-02

Joint ci ratio: 4.571913e-02	ci left: 4.565086e-02	ci right 4.779337e-02	k: 7007	n:150000
Cons ci ratio: 1.235470e-01	ci left: 6.254613e-03	ci right 7.084629e-03	k: 999	n:150000
KS ci ratio: 2.021202e-02	ci left: 1.984564e-01	ci right 2.025152e-01	k: 30072	n:150000
ZNF367   150000 perm   36 sec   (4199 perm/sec)   p_kst 2.004800e-01   p_cons 6.660000e-03   p_joint 4.671333e-02

Joint ci ratio: 4.893310e-02	ci left: 3.761809e-02	ci right 3.951118e-02	k: 6169	n:160000
Cons ci ratio: 1.193239e-01	ci left: 6.300041e-03	ci right 7.105491e-03	k: 1071	n:160000
KS ci ratio: 1.956520e-02	ci left: 1.986028e-01	ci right 2.025331e-01	k: 32090	n:160000
ZNF367   160000 perm   39 sec   (4126 perm/sec)   p_kst 2.005625e-01   p_cons 6.693750e-03   p_joint 3.855625e-02

Joint ci ratio: 4.901141e-02	ci left: 3.537519e-02	ci right 3.715832e-02	k: 6164	n:170000
Cons ci ratio: 1.157612e-01	ci left: 6.311983e-03	ci right 7.093218e-03	k: 1138	n:170000
KS ci ratio: 1.897084e-02	ci left: 1.988334e-01	ci right 2.026474e-01	k: 34125	n:170000
ZNF367   170000 perm   42 sec   (4057 perm/sec)   p_kst 2.007353e-01   p_cons 6.694118e-03   p_joint 3.625882e-02

Joint ci ratio: 4.845551e-02	ci left: 3.423258e-02	ci right 3.593799e-02	k: 6314	n:180000
Cons ci ratio: 1.121724e-01	ci left: 6.360719e-03	ci right 7.121965e-03	k: 1212	n:180000
KS ci ratio: 1.842626e-02	ci left: 1.990621e-01	ci right 2.027697e-01	k: 36164	n:180000
ZNF367   180000 perm   45 sec   (3992 perm/sec)   p_kst 2.009111e-01   p_cons 6.733333e-03   p_joint 3.507778e-02

Joint ci ratio: 4.705655e-02	ci left: 3.440706e-02	ci right 3.607032e-02	k: 6694	n:190000
Cons ci ratio: 1.086010e-01	ci left: 6.440505e-03	ci right 7.185189e-03	k: 1293	n:190000
KS ci ratio: 1.792399e-02	ci left: 1.993049e-01	ci right 2.029148e-01	k: 38210	n:190000
ZNF367   190000 perm   48 sec   (3930 perm/sec)   p_kst 2.011053e-01   p_cons 6.805263e-03   p_joint 3.523158e-02

Joint ci ratio: 4.397062e-02	ci left: 3.737899e-02	ci right 3.906443e-02	k: 7643	n:200000
Cons ci ratio: 1.058944e-01	ci left: 6.444494e-03	ci right 7.169911e-03	k: 1360	n:200000
KS ci ratio: 1.745496e-02	ci left: 1.996293e-01	ci right 2.031494e-01	k: 40277	n:200000
ZNF367   200000 perm   52 sec   (3870 perm/sec)   p_kst 2.013850e-01   p_cons 6.800000e-03   p_joint 3.821500e-02

Joint ci ratio: 4.606876e-02	ci left: 3.256024e-02	ci right 3.410030e-02	k: 6998	n:210000
Cons ci ratio: 1.033078e-01	ci left: 6.457591e-03	ci right 7.165649e-03	k: 1429	n:210000
KS ci ratio: 1.702394e-02	ci left: 1.998669e-01	ci right 2.033033e-01	k: 42332	n:210000
ZNF367   210000 perm   55 sec   (3810 perm/sec)   p_kst 2.015810e-01   p_cons 6.804762e-03   p_joint 3.332381e-02

Joint ci ratio: 3.888900e-02	ci left: 4.328632e-02	ci right 4.500754e-02	k: 9711	n:220000
Cons ci ratio: 1.008681e-01	ci left: 6.474125e-03	ci right 7.166238e-03	k: 1499	n:220000
KS ci ratio: 1.664849e-02	ci left: 1.995990e-01	ci right 2.029544e-01	k: 44280	n:220000
ZNF367   220000 perm   59 sec   (3755 perm/sec)   p_kst 2.012727e-01   p_cons 6.813636e-03   p_joint 4.414091e-02

Joint ci ratio: 4.088113e-02	ci left: 3.765277e-02	ci right 3.922846e-02	k: 8840	n:230000
Cons ci ratio: 9.865672e-02	ci left: 6.480918e-03	ci right 7.157688e-03	k: 1567	n:230000
KS ci ratio: 1.630919e-02	ci left: 1.991124e-01	ci right 2.023908e-01	k: 46172	n:230000
ZNF367   230000 perm   62 sec   (3706 perm/sec)   p_kst 2.007478e-01   p_cons 6.813043e-03   p_joint 3.843478e-02

Outputting figure to mutsig2_images.part000000000196/ZNF367.3_1073_230000_0.20075_0.006813_0.038435.png
                gene_name: ZNF367
               theta_stop: 0.099 
                    nperm: 230000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.0068 
      ci_cons_bounds_left: 0.0065 
     ci_cons_bounds_right: 0.0072 
                  p_joint: 0.038 
     ci_joint_bounds_left: 0.038 
    ci_joint_bounds_right: 0.039 

Current progress: 84 percent done.
ZNF239
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.120649e-02	ci left: 7.652685e-01	ci right 7.817719e-01	k: 7736	n:10000
KS ci ratio: 4.746511e-02	ci left: 3.957559e-01	ci right 4.150992e-01	k: 4054	n:10000
ZNF239   10000 perm   2 sec   (6389 perm/sec)   p_kst 4.054000e-01   p_cons 7.736000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF239.2_1381_10000_0.4054_0.7736_1.png
                gene_name: ZNF239
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 85 percent done.
ZNF259
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.160103e-01	ci left: 6.974044e-03	ci right 1.072050e-02	k: 87	n:10000
Cons ci ratio: 3.868023e-02	ci left: 4.967503e-01	ci right 5.164458e-01	k: 5066	n:10000
KS ci ratio: 7.145810e-01	ci left: 1.943009e-03	ci right 4.162249e-03	k: 29	n:10000
ZNF259   10000 perm   2 sec   (6603 perm/sec)   p_kst 2.900000e-03   p_cons 5.066000e-01   p_joint 8.700000e-03

Joint ci ratio: 3.797244e-01	ci left: 4.295928e-03	ci right 6.351929e-03	k: 105	n:20000
Cons ci ratio: 2.691335e-02	ci left: 5.077468e-01	ci right 5.216490e-01	k: 10294	n:20000
KS ci ratio: 5.902971e-01	ci left: 1.556389e-03	ci right 2.894955e-03	k: 43	n:20000
ZNF259   20000 perm   3 sec   (5836 perm/sec)   p_kst 2.150000e-03   p_cons 5.147000e-01   p_joint 5.250000e-03

Joint ci ratio: 5.013857e-01	ci left: 1.526547e-03	ci right 2.573657e-03	k: 60	n:30000
Cons ci ratio: 2.213703e-02	ci left: 5.053593e-01	ci right 5.167053e-01	k: 15331	n:30000
KS ci ratio: 5.013857e-01	ci left: 1.526547e-03	ci right 2.573657e-03	k: 60	n:30000
ZNF259   30000 perm   5 sec   (5539 perm/sec)   p_kst 2.000000e-03   p_cons 5.110333e-01   p_joint 2.000000e-03

Joint ci ratio: 4.351089e-01	ci left: 1.586184e-03	ci right 2.488564e-03	k: 80	n:40000
Cons ci ratio: 1.919961e-02	ci left: 5.053880e-01	ci right 5.152105e-01	k: 20412	n:40000
KS ci ratio: 4.351089e-01	ci left: 1.586184e-03	ci right 2.488564e-03	k: 80	n:40000
ZNF259   40000 perm   7 sec   (5338 perm/sec)   p_kst 2.000000e-03   p_cons 5.103000e-01   p_joint 2.000000e-03

Joint ci ratio: 3.896565e-01	ci left: 1.627567e-03	ci right 2.432010e-03	k: 100	n:50000
Cons ci ratio: 1.719754e-02	ci left: 5.051877e-01	ci right 5.139711e-01	k: 25479	n:50000
KS ci ratio: 3.896565e-01	ci left: 1.627567e-03	ci right 2.432010e-03	k: 100	n:50000
ZNF259   50000 perm   10 sec   (5198 perm/sec)   p_kst 2.000000e-03   p_cons 5.095800e-01   p_joint 2.000000e-03

Joint ci ratio: 3.620476e-01	ci left: 1.597806e-03	ci right 2.318402e-03	k: 116	n:60000
Cons ci ratio: 1.569544e-02	ci left: 5.056913e-01	ci right 5.137078e-01	k: 30582	n:60000
KS ci ratio: 3.620476e-01	ci left: 1.597806e-03	ci right 2.318402e-03	k: 116	n:60000
ZNF259   60000 perm   12 sec   (5064 perm/sec)   p_kst 1.933333e-03   p_cons 5.097000e-01   p_joint 1.933333e-03

Joint ci ratio: 3.408679e-01	ci left: 1.564926e-03	ci right 2.220326e-03	k: 131	n:70000
Cons ci ratio: 1.450631e-02	ci left: 5.068465e-01	ci right 5.142669e-01	k: 35739	n:70000
KS ci ratio: 3.408679e-01	ci left: 1.564926e-03	ci right 2.220326e-03	k: 131	n:70000
ZNF259   70000 perm   14 sec   (4961 perm/sec)   p_kst 1.871429e-03   p_cons 5.105571e-01   p_joint 1.871429e-03

Joint ci ratio: 3.208377e-01	ci left: 1.564174e-03	ci right 2.172862e-03	k: 148	n:80000
Cons ci ratio: 1.356624e-02	ci left: 5.072044e-01	ci right 5.141448e-01	k: 40854	n:80000
KS ci ratio: 3.208377e-01	ci left: 1.564174e-03	ci right 2.172862e-03	k: 148	n:80000
ZNF259   80000 perm   16 sec   (4861 perm/sec)   p_kst 1.850000e-03   p_cons 5.106750e-01   p_joint 1.850000e-03

Joint ci ratio: 2.960343e-01	ci left: 1.656954e-03	ci right 2.242560e-03	k: 174	n:90000
Cons ci ratio: 1.275654e-02	ci left: 5.087284e-01	ci right 5.152708e-01	k: 46080	n:90000
KS ci ratio: 2.960343e-01	ci left: 1.656954e-03	ci right 2.242560e-03	k: 174	n:90000
ZNF259   90000 perm   19 sec   (4768 perm/sec)   p_kst 1.933333e-03   p_cons 5.120000e-01   p_joint 1.933333e-03

Joint ci ratio: 2.804418e-01	ci left: 1.676813e-03	ci right 2.232712e-03	k: 194	n:100000
Cons ci ratio: 1.210993e-02	ci left: 5.085666e-01	ci right 5.147728e-01	k: 51167	n:100000
KS ci ratio: 2.804418e-01	ci left: 1.676813e-03	ci right 2.232712e-03	k: 194	n:100000
ZNF259   100000 perm   21 sec   (4665 perm/sec)   p_kst 1.940000e-03   p_cons 5.116700e-01   p_joint 1.940000e-03

Joint ci ratio: 2.683326e-01	ci left: 1.676758e-03	ci right 2.204601e-03	k: 212	n:110000
Cons ci ratio: 1.155073e-02	ci left: 5.085230e-01	ci right 5.144400e-01	k: 56263	n:110000
KS ci ratio: 2.683326e-01	ci left: 1.676758e-03	ci right 2.204601e-03	k: 212	n:110000
ZNF259   110000 perm   24 sec   (4578 perm/sec)   p_kst 1.927273e-03   p_cons 5.114818e-01   p_joint 1.927273e-03

Joint ci ratio: 2.527807e-01	ci left: 1.747354e-03	ci right 2.260524e-03	k: 239	n:120000
Cons ci ratio: 1.105674e-02	ci left: 5.087507e-01	ci right 5.144154e-01	k: 61390	n:120000
KS ci ratio: 2.527807e-01	ci left: 1.747354e-03	ci right 2.260524e-03	k: 239	n:120000
ZNF259   120000 perm   27 sec   (4474 perm/sec)   p_kst 1.991667e-03   p_cons 5.115833e-01   p_joint 1.991667e-03

Joint ci ratio: 2.433333e-01	ci left: 1.750013e-03	ci right 2.241856e-03	k: 258	n:130000
Cons ci ratio: 1.062476e-02	ci left: 5.087787e-01	ci right 5.142208e-01	k: 66495	n:130000
KS ci ratio: 2.433333e-01	ci left: 1.750013e-03	ci right 2.241856e-03	k: 258	n:130000
ZNF259   130000 perm   30 sec   (4401 perm/sec)   p_kst 1.984615e-03   p_cons 5.115000e-01   p_joint 1.984615e-03

Joint ci ratio: 8.442896e-02	ci left: 1.452363e-02	ci right 1.581085e-02	k: 2122	n:140000
Cons ci ratio: 1.024311e-02	ci left: 5.086421e-01	ci right 5.138860e-01	k: 71577	n:140000
KS ci ratio: 2.331966e-01	ci left: 1.779498e-03	ci right 2.255791e-03	k: 281	n:140000
ZNF259   140000 perm   32 sec   (4333 perm/sec)   p_kst 2.007143e-03   p_cons 5.112643e-01   p_joint 1.515714e-02

Joint ci ratio: 9.710820e-02	ci left: 1.022451e-02	ci right 1.127453e-02	k: 1611	n:150000
Cons ci ratio: 9.904593e-03	ci left: 5.082868e-01	ci right 5.133528e-01	k: 76623	n:150000
KS ci ratio: 2.260941e-01	ci left: 1.773962e-03	ci right 2.232297e-03	k: 299	n:150000
ZNF259   150000 perm   35 sec   (4260 perm/sec)   p_kst 1.993333e-03   p_cons 5.108200e-01   p_joint 1.074000e-02

Joint ci ratio: 9.381710e-02	ci left: 1.028709e-02	ci right 1.130576e-02	k: 1726	n:160000
Cons ci ratio: 9.596589e-03	ci left: 5.080285e-01	ci right 5.129336e-01	k: 81677	n:160000
KS ci ratio: 2.182325e-01	ci left: 1.792941e-03	ci right 2.237913e-03	k: 321	n:160000
ZNF259   160000 perm   38 sec   (4187 perm/sec)   p_kst 2.006250e-03   p_cons 5.104812e-01   p_joint 1.078750e-02

Joint ci ratio: 6.105184e-02	ci left: 2.295313e-02	ci right 2.440435e-02	k: 4024	n:170000
Cons ci ratio: 9.308619e-03	ci left: 5.081794e-01	ci right 5.129378e-01	k: 86795	n:170000
KS ci ratio: 2.105253e-01	ci left: 1.821076e-03	ci right 2.255011e-03	k: 345	n:170000
ZNF259   170000 perm   41 sec   (4118 perm/sec)   p_kst 2.029412e-03   p_cons 5.105588e-01   p_joint 2.367059e-02

Joint ci ratio: 5.942295e-02	ci left: 2.290364e-02	ci right 2.431176e-02	k: 4248	n:180000
Cons ci ratio: 9.043901e-03	ci left: 5.083822e-01	ci right 5.130063e-01	k: 91925	n:180000
KS ci ratio: 2.055385e-01	ci left: 1.809428e-03	ci right 2.229092e-03	k: 362	n:180000
ZNF259   180000 perm   44 sec   (4051 perm/sec)   p_kst 2.011111e-03   p_cons 5.106944e-01   p_joint 2.360000e-02

Joint ci ratio: 6.658318e-02	ci left: 1.731891e-02	ci right 1.851692e-02	k: 3403	n:190000
Cons ci ratio: 8.802222e-03	ci left: 5.084706e-01	ci right 5.129712e-01	k: 97037	n:190000
KS ci ratio: 2.003624e-01	ci left: 1.809114e-03	ci right 2.216846e-03	k: 381	n:190000
ZNF259   190000 perm   48 sec   (3985 perm/sec)   p_kst 2.005263e-03   p_cons 5.107211e-01   p_joint 1.791053e-02

Joint ci ratio: 8.144540e-02	ci left: 1.098342e-02	ci right 1.192082e-02	k: 2289	n:200000
Cons ci ratio: 8.576191e-03	ci left: 5.087116e-01	ci right 5.130981e-01	k: 102181	n:200000
KS ci ratio: 1.970412e-01	ci left: 1.780422e-03	ci right 2.174237e-03	k: 394	n:200000
ZNF259   200000 perm   51 sec   (3928 perm/sec)   p_kst 1.970000e-03   p_cons 5.109050e-01   p_joint 1.144500e-02

Joint ci ratio: 1.431696e-01	ci left: 3.302410e-03	ci right 3.816205e-03	k: 746	n:210000
Cons ci ratio: 8.376852e-03	ci left: 5.083261e-01	ci right 5.126069e-01	k: 107198	n:210000
KS ci ratio: 1.931696e-01	ci left: 1.768108e-03	ci right 2.150611e-03	k: 410	n:210000
ZNF259   210000 perm   54 sec   (3872 perm/sec)   p_kst 1.952381e-03   p_cons 5.104667e-01   p_joint 3.552381e-03

Joint ci ratio: 1.403803e-01	ci left: 3.283825e-03	ci right 3.783942e-03	k: 776	n:220000
Cons ci ratio: 8.184903e-03	ci left: 5.083360e-01	ci right 5.125183e-01	k: 112294	n:220000
KS ci ratio: 1.888539e-01	ci left: 1.769973e-03	ci right 2.143344e-03	k: 429	n:220000
ZNF259   220000 perm   58 sec   (3819 perm/sec)   p_kst 1.950000e-03   p_cons 5.104273e-01   p_joint 3.527273e-03

Joint ci ratio: 7.076678e-02	ci left: 1.269909e-02	ci right 1.363498e-02	k: 3027	n:230000
Cons ci ratio: 8.003064e-03	ci left: 5.085026e-01	ci right 5.125928e-01	k: 117426	n:230000
KS ci ratio: 1.854369e-01	ci left: 1.759323e-03	ci right 2.122977e-03	k: 445	n:230000
ZNF259   230000 perm   61 sec   (3766 perm/sec)   p_kst 1.934783e-03   p_cons 5.105478e-01   p_joint 1.316087e-02

Joint ci ratio: 1.336651e-01	ci left: 3.332090e-03	ci right 3.813355e-03	k: 856	n:240000
Cons ci ratio: 7.828391e-03	ci left: 5.089396e-01	ci right 5.129435e-01	k: 122626	n:240000
KS ci ratio: 1.814137e-01	ci left: 1.765526e-03	ci right 2.121675e-03	k: 465	n:240000
ZNF259   240000 perm   65 sec   (3716 perm/sec)   p_kst 1.937500e-03   p_cons 5.109417e-01   p_joint 3.566667e-03

Joint ci ratio: 1.310905e-01	ci left: 3.330303e-03	ci right 3.801322e-03	k: 890	n:250000
Cons ci ratio: 7.668902e-03	ci left: 5.090664e-01	ci right 5.129893e-01	k: 127757	n:250000
KS ci ratio: 1.785642e-01	ci left: 1.752200e-03	ci right 2.099509e-03	k: 480	n:250000
ZNF259   250000 perm   68 sec   (3664 perm/sec)   p_kst 1.920000e-03   p_cons 5.110280e-01   p_joint 3.560000e-03

Joint ci ratio: 1.283808e-01	ci left: 3.343626e-03	ci right 3.806010e-03	k: 928	n:260000
Cons ci ratio: 7.521152e-03	ci left: 5.090265e-01	ci right 5.128732e-01	k: 132847	n:260000
KS ci ratio: 1.746147e-01	ci left: 1.765685e-03	ci right 2.107109e-03	k: 502	n:260000
ZNF259   260000 perm   72 sec   (3616 perm/sec)   p_kst 1.930769e-03   p_cons 5.109500e-01   p_joint 3.569231e-03

Joint ci ratio: 8.835798e-02	ci left: 6.917141e-03	ci right 7.560171e-03	k: 1953	n:270000
Cons ci ratio: 7.382939e-03	ci left: 5.089014e-01	ci right 5.126762e-01	k: 137913	n:270000
KS ci ratio: 1.715722e-01	ci left: 1.764067e-03	ci right 2.098620e-03	k: 520	n:270000
ZNF259   270000 perm   76 sec   (3569 perm/sec)   p_kst 1.925926e-03   p_cons 5.107889e-01   p_joint 7.233333e-03

Joint ci ratio: 1.242392e-01	ci left: 3.322685e-03	ci right 3.766260e-03	k: 991	n:280000
Cons ci ratio: 7.253784e-03	ci left: 5.086680e-01	ci right 5.123747e-01	k: 142946	n:280000
KS ci ratio: 1.699518e-01	ci left: 1.735251e-03	ci right 2.060912e-03	k: 530	n:280000
ZNF259   280000 perm   79 sec   (3523 perm/sec)   p_kst 1.892857e-03   p_cons 5.105214e-01   p_joint 3.539286e-03

Joint ci ratio: 6.324863e-02	ci left: 1.265877e-02	ci right 1.348894e-02	k: 3790	n:290000
Cons ci ratio: 7.129503e-03	ci left: 5.085684e-01	ci right 5.122107e-01	k: 148013	n:290000
KS ci ratio: 1.671428e-01	ci left: 1.734865e-03	ci right 2.054531e-03	k: 548	n:290000
ZNF259   290000 perm   83 sec   (3477 perm/sec)   p_kst 1.889655e-03   p_cons 5.103897e-01   p_joint 1.306897e-02

Joint ci ratio: 6.215925e-02	ci left: 1.267647e-02	ci right 1.349297e-02	k: 3924	n:300000
Cons ci ratio: 7.013876e-03	ci left: 5.082994e-01	ci right 5.118804e-01	k: 153027	n:300000
KS ci ratio: 1.646141e-01	ci left: 1.731350e-03	ci right 2.045064e-03	k: 565	n:300000
ZNF259   300000 perm   87 sec   (3433 perm/sec)   p_kst 1.883333e-03   p_cons 5.100900e-01   p_joint 1.308000e-02

Joint ci ratio: 1.183066e-01	ci left: 3.320191e-03	ci right 3.740787e-03	k: 1093	n:310000
Cons ci ratio: 6.900174e-03	ci left: 5.083031e-01	ci right 5.118258e-01	k: 158120	n:310000
KS ci ratio: 1.617803e-01	ci left: 1.737382e-03	ci right 2.046242e-03	k: 585	n:310000
ZNF259   310000 perm   91 sec   (3389 perm/sec)   p_kst 1.887097e-03   p_cons 5.100645e-01   p_joint 3.525806e-03

Joint ci ratio: 1.241414e-01	ci left: 2.913367e-03	ci right 3.301968e-03	k: 993	n:320000
Cons ci ratio: 6.791617e-03	ci left: 5.083226e-01	ci right 5.117897e-01	k: 163218	n:320000
KS ci ratio: 1.588256e-01	ci left: 1.749082e-03	ci right 2.053802e-03	k: 607	n:320000
ZNF259   320000 perm   96 sec   (3347 perm/sec)   p_kst 1.896875e-03   p_cons 5.100562e-01   p_joint 3.103125e-03

Joint ci ratio: 1.217149e-01	ci left: 2.942571e-03	ci right 3.326842e-03	k: 1033	n:330000
Cons ci ratio: 6.686162e-03	ci left: 5.084807e-01	ci right 5.118949e-01	k: 168362	n:330000
KS ci ratio: 1.561514e-01	ci left: 1.757208e-03	ci right 2.057707e-03	k: 628	n:330000
ZNF259   330000 perm   100 sec   (3306 perm/sec)   p_kst 1.903030e-03   p_cons 5.101879e-01   p_joint 3.130303e-03

Joint ci ratio: 1.124912e-01	ci left: 3.358571e-03	ci right 3.761728e-03	k: 1209	n:340000
Cons ci ratio: 6.586943e-03	ci left: 5.085181e-01	ci right 5.118817e-01	k: 173468	n:340000
KS ci ratio: 1.543231e-01	ci left: 1.747929e-03	ci right 2.043017e-03	k: 643	n:340000
ZNF259   340000 perm   104 sec   (3264 perm/sec)   p_kst 1.891176e-03   p_cons 5.102000e-01   p_joint 3.555882e-03

Joint ci ratio: 1.183306e-01	ci left: 2.940707e-03	ci right 3.313309e-03	k: 1093	n:350000
Cons ci ratio: 6.491049e-03	ci left: 5.086281e-01	ci right 5.119432e-01	k: 178600	n:350000
KS ci ratio: 1.522108e-01	ci left: 1.747444e-03	ci right 2.038045e-03	k: 661	n:350000
ZNF259   350000 perm   109 sec   (3224 perm/sec)   p_kst 1.888571e-03   p_cons 5.102857e-01   p_joint 3.122857e-03

Joint ci ratio: 1.171073e-01	ci left: 2.921026e-03	ci right 3.287045e-03	k: 1116	n:360000
Cons ci ratio: 6.402569e-03	ci left: 5.084711e-01	ci right 5.117398e-01	k: 183638	n:360000
KS ci ratio: 1.507391e-01	ci left: 1.733646e-03	ci right 2.018912e-03	k: 674	n:360000
ZNF259   360000 perm   113 sec   (3181 perm/sec)   p_kst 1.872222e-03   p_cons 5.101056e-01   p_joint 3.100000e-03

Joint ci ratio: 1.082379e-01	ci left: 3.341180e-03	ci right 3.726119e-03	k: 1306	n:370000
Cons ci ratio: 6.317132e-03	ci left: 5.083608e-01	ci right 5.115850e-01	k: 188690	n:370000
KS ci ratio: 1.485542e-01	ci left: 1.738821e-03	ci right 2.020423e-03	k: 694	n:370000
ZNF259   370000 perm   118 sec   (3143 perm/sec)   p_kst 1.875676e-03   p_cons 5.099730e-01   p_joint 3.529730e-03

Joint ci ratio: 1.072592e-01	ci left: 3.314708e-03	ci right 3.692926e-03	k: 1330	n:380000
Cons ci ratio: 6.235353e-03	ci left: 5.082302e-01	ci right 5.114117e-01	k: 193732	n:380000
KS ci ratio: 1.468737e-01	ci left: 1.733611e-03	ci right 2.010915e-03	k: 710	n:380000
ZNF259   380000 perm   122 sec   (3106 perm/sec)   p_kst 1.868421e-03   p_cons 5.098211e-01   p_joint 3.500000e-03

Joint ci ratio: 1.055664e-01	ci left: 3.337039e-03	ci right 3.711423e-03	k: 1373	n:390000
Cons ci ratio: 6.153006e-03	ci left: 5.084041e-01	ci right 5.115445e-01	k: 198890	n:390000
KS ci ratio: 1.447511e-01	ci left: 1.741042e-03	ci right 2.015162e-03	k: 731	n:390000
ZNF259   390000 perm   127 sec   (3070 perm/sec)   p_kst 1.874359e-03   p_cons 5.099744e-01   p_joint 3.520513e-03

Joint ci ratio: 1.046954e-01	ci left: 3.309599e-03	ci right 3.677652e-03	k: 1396	n:400000
Cons ci ratio: 6.074506e-03	ci left: 5.085145e-01	ci right 5.116153e-01	k: 204026	n:400000
KS ci ratio: 1.433873e-01	ci left: 1.731253e-03	ci right 2.001044e-03	k: 745	n:400000
ZNF259   400000 perm   132 sec   (3035 perm/sec)   p_kst 1.862500e-03   p_cons 5.100650e-01   p_joint 3.490000e-03

Joint ci ratio: 1.101759e-01	ci left: 2.908417e-03	ci right 3.249885e-03	k: 1261	n:410000
Cons ci ratio: 5.998701e-03	ci left: 5.086393e-01	ci right 5.117020e-01	k: 209170	n:410000
KS ci ratio: 1.415954e-01	ci left: 1.733717e-03	ci right 2.000231e-03	k: 764	n:410000
ZNF259   410000 perm   137 sec   (3000 perm/sec)   p_kst 1.863415e-03   p_cons 5.101707e-01   p_joint 3.075610e-03

Joint ci ratio: 1.091438e-01	ci left: 2.894743e-03	ci right 3.231218e-03	k: 1285	n:420000
Cons ci ratio: 5.925184e-03	ci left: 5.087988e-01	ci right 5.118248e-01	k: 214331	n:420000
KS ci ratio: 1.404084e-01	ci left: 1.722298e-03	ci right 1.984651e-03	k: 777	n:420000
ZNF259   420000 perm   142 sec   (2962 perm/sec)   p_kst 1.850000e-03   p_cons 5.103119e-01   p_joint 3.059524e-03

Joint ci ratio: 1.078516e-01	ci left: 2.897561e-03	ci right 3.230122e-03	k: 1316	n:430000
Cons ci ratio: 5.855585e-03	ci left: 5.088418e-01	ci right 5.118324e-01	k: 219445	n:430000
KS ci ratio: 1.390747e-01	ci left: 1.715908e-03	ci right 1.974599e-03	k: 792	n:430000
ZNF259   430000 perm   147 sec   (2931 perm/sec)   p_kst 1.841860e-03   p_cons 5.103372e-01   p_joint 3.060465e-03

Joint ci ratio: 1.066836e-01	ci left: 2.895848e-03	ci right 3.224387e-03	k: 1345	n:440000
Cons ci ratio: 5.787225e-03	ci left: 5.089831e-01	ci right 5.119395e-01	k: 224603	n:440000
KS ci ratio: 1.374379e-01	ci left: 1.718599e-03	ci right 1.974396e-03	k: 811	n:440000
ZNF259   440000 perm   152 sec   (2900 perm/sec)   p_kst 1.843182e-03   p_cons 5.104614e-01   p_joint 3.056818e-03

Joint ci ratio: 1.052843e-01	ci left: 2.909376e-03	ci right 3.234852e-03	k: 1381	n:450000
Cons ci ratio: 5.721686e-03	ci left: 5.090761e-01	ci right 5.119994e-01	k: 229742	n:450000
KS ci ratio: 1.356125e-01	ci left: 1.727627e-03	ci right 1.981078e-03	k: 833	n:450000
ZNF259   450000 perm   157 sec   (2870 perm/sec)   p_kst 1.851111e-03   p_cons 5.105378e-01   p_joint 3.068889e-03

Joint ci ratio: 1.040491e-01	ci left: 2.915990e-03	ci right 3.238145e-03	k: 1414	n:460000
Cons ci ratio: 5.657710e-03	ci left: 5.092195e-01	ci right 5.121108e-01	k: 234906	n:460000
KS ci ratio: 1.337797e-01	ci left: 1.738386e-03	ci right 1.989694e-03	k: 856	n:460000
ZNF259   460000 perm   162 sec   (2840 perm/sec)   p_kst 1.860870e-03   p_cons 5.106652e-01   p_joint 3.073913e-03

Joint ci ratio: 1.027497e-01	ci left: 2.928564e-03	ci right 3.247823e-03	k: 1450	n:470000
Cons ci ratio: 5.596833e-03	ci left: 5.092676e-01	ci right 5.121280e-01	k: 240028	n:470000
KS ci ratio: 1.327772e-01	ci left: 1.728136e-03	ci right 1.975942e-03	k: 869	n:470000
ZNF259   470000 perm   167 sec   (2810 perm/sec)   p_kst 1.848936e-03   p_cons 5.106979e-01   p_joint 3.085106e-03

Joint ci ratio: 1.014293e-01	ci left: 2.944698e-03	ci right 3.261346e-03	k: 1488	n:480000
Cons ci ratio: 5.539056e-03	ci left: 5.092077e-01	ci right 5.120381e-01	k: 245099	n:480000
KS ci ratio: 1.312767e-01	ci left: 1.732424e-03	ci right 1.977819e-03	k: 889	n:480000
ZNF259   480000 perm   173 sec   (2779 perm/sec)   p_kst 1.852083e-03   p_cons 5.106229e-01   p_joint 3.100000e-03

Joint ci ratio: 1.044297e-01	ci left: 2.717570e-03	ci right 3.018969e-03	k: 1404	n:490000
Cons ci ratio: 5.482294e-03	ci left: 5.092176e-01	ci right 5.120190e-01	k: 250203	n:490000
KS ci ratio: 1.293285e-01	ci left: 1.750375e-03	ci right 1.994351e-03	k: 916	n:490000
ZNF259   490000 perm   178 sec   (2750 perm/sec)   p_kst 1.869388e-03   p_cons 5.106184e-01   p_joint 2.865306e-03

Joint ci ratio: 1.274645e-01	ci left: 1.767634e-03	ci right 2.010196e-03	k: 943	n:500000
Cons ci ratio: 5.427394e-03	ci left: 5.092133e-01	ci right 5.119865e-01	k: 255300	n:500000
KS ci ratio: 1.274645e-01	ci left: 1.767634e-03	ci right 2.010196e-03	k: 943	n:500000
ZNF259   500000 perm   184 sec   (2721 perm/sec)   p_kst 1.886000e-03   p_cons 5.106000e-01   p_joint 1.886000e-03

Joint ci ratio: 1.261352e-01	ci left: 1.770946e-03	ci right 2.011239e-03	k: 963	n:510000
Cons ci ratio: 5.376473e-03	ci left: 5.089898e-01	ci right 5.117356e-01	k: 260285	n:510000
KS ci ratio: 1.261352e-01	ci left: 1.770946e-03	ci right 2.011239e-03	k: 963	n:510000
ZNF259   510000 perm   189 sec   (2693 perm/sec)   p_kst 1.888235e-03   p_cons 5.103627e-01   p_joint 1.888235e-03

Joint ci ratio: 1.249739e-01	ci left: 1.770418e-03	ci right 2.008264e-03	k: 981	n:520000
Cons ci ratio: 5.324129e-03	ci left: 5.090403e-01	ci right 5.117596e-01	k: 265408	n:520000
KS ci ratio: 1.249739e-01	ci left: 1.770418e-03	ci right 2.008264e-03	k: 981	n:520000
ZNF259   520000 perm   195 sec   (2665 perm/sec)   p_kst 1.886538e-03   p_cons 5.104000e-01   p_joint 1.886538e-03

Joint ci ratio: 1.233508e-01	ci left: 1.784548e-03	ci right 2.020950e-03	k: 1007	n:530000
Cons ci ratio: 5.273403e-03	ci left: 5.090777e-01	ci right 5.117712e-01	k: 270525	n:530000
KS ci ratio: 1.233508e-01	ci left: 1.784548e-03	ci right 2.020950e-03	k: 1007	n:530000
ZNF259   530000 perm   201 sec   (2638 perm/sec)   p_kst 1.900000e-03   p_cons 5.104245e-01   p_joint 1.900000e-03

Joint ci ratio: 1.225036e-01	ci left: 1.776629e-03	ci right 2.010249e-03	k: 1021	n:540000
Cons ci ratio: 5.223056e-03	ci left: 5.092139e-01	ci right 5.118823e-01	k: 275696	n:540000
KS ci ratio: 1.225036e-01	ci left: 1.776629e-03	ci right 2.010249e-03	k: 1021	n:540000
ZNF259   540000 perm   207 sec   (2612 perm/sec)   p_kst 1.890741e-03   p_cons 5.105481e-01   p_joint 1.890741e-03

Joint ci ratio: 1.215561e-01	ci left: 1.772529e-03	ci right 2.003678e-03	k: 1037	n:550000
Cons ci ratio: 5.173219e-03	ci left: 5.094325e-01	ci right 5.120765e-01	k: 280915	n:550000
KS ci ratio: 1.215561e-01	ci left: 1.772529e-03	ci right 2.003678e-03	k: 1037	n:550000
ZNF259   550000 perm   213 sec   (2586 perm/sec)   p_kst 1.885455e-03   p_cons 5.107545e-01   p_joint 1.885455e-03

Joint ci ratio: 8.727841e-02	ci left: 3.432588e-03	ci right 3.747582e-03	k: 2009	n:560000
Cons ci ratio: 5.128426e-03	ci left: 5.092880e-01	ci right 5.119083e-01	k: 285935	n:560000
KS ci ratio: 1.200610e-01	ci left: 1.785903e-03	ci right 2.015728e-03	k: 1063	n:560000
ZNF259   560000 perm   219 sec   (2561 perm/sec)   p_kst 1.898214e-03   p_cons 5.105982e-01   p_joint 3.587500e-03

Joint ci ratio: 8.631683e-02	ci left: 3.449602e-03	ci right 3.762494e-03	k: 2054	n:570000
Cons ci ratio: 5.082134e-03	ci left: 5.094084e-01	ci right 5.120056e-01	k: 291103	n:570000
KS ci ratio: 1.184022e-01	ci left: 1.805634e-03	ci right 2.034563e-03	k: 1093	n:570000
ZNF259   570000 perm   225 sec   (2536 perm/sec)   p_kst 1.917544e-03   p_cons 5.107070e-01   p_joint 3.603509e-03

Joint ci ratio: 8.563224e-02	ci left: 3.445799e-03	ci right 3.755743e-03	k: 2087	n:580000
Cons ci ratio: 5.037890e-03	ci left: 5.094436e-01	ci right 5.120183e-01	k: 296224	n:580000
KS ci ratio: 1.172817e-01	ci left: 1.809643e-03	ci right 2.036758e-03	k: 1114	n:580000
ZNF259   580000 perm   231 sec   (2511 perm/sec)   p_kst 1.920690e-03   p_cons 5.107310e-01   p_joint 3.598276e-03

Joint ci ratio: 8.488339e-02	ci left: 3.448771e-03	ci right 3.756135e-03	k: 2124	n:590000
Cons ci ratio: 4.995222e-03	ci left: 5.094337e-01	ci right 5.119865e-01	k: 301319	n:590000
KS ci ratio: 1.159881e-01	ci left: 1.820108e-03	ci right 2.045845e-03	k: 1139	n:590000
ZNF259   590000 perm   237 sec   (2487 perm/sec)   p_kst 1.930508e-03   p_cons 5.107102e-01   p_joint 3.600000e-03

Joint ci ratio: 8.413433e-02	ci left: 3.453286e-03	ci right 3.758204e-03	k: 2162	n:600000
Cons ci ratio: 4.954827e-03	ci left: 5.093026e-01	ci right 5.118340e-01	k: 306341	n:600000
KS ci ratio: 1.149838e-01	ci left: 1.822143e-03	ci right 2.046043e-03	k: 1159	n:600000
ZNF259   600000 perm   244 sec   (2461 perm/sec)   p_kst 1.931667e-03   p_cons 5.105683e-01   p_joint 3.603333e-03

Joint ci ratio: 8.353817e-02	ci left: 3.446429e-03	ci right 3.748480e-03	k: 2193	n:610000
Cons ci ratio: 4.914879e-03	ci left: 5.092283e-01	ci right 5.117388e-01	k: 311395	n:610000
KS ci ratio: 1.142966e-01	ci left: 1.814564e-03	ci right 2.036110e-03	k: 1173	n:610000
ZNF259   610000 perm   251 sec   (2434 perm/sec)   p_kst 1.922951e-03   p_cons 5.104836e-01   p_joint 3.595082e-03

Joint ci ratio: 8.297323e-02	ci left: 3.438220e-03	ci right 3.737415e-03	k: 2223	n:620000
Cons ci ratio: 4.875504e-03	ci left: 5.091952e-01	ci right 5.116854e-01	k: 316473	n:620000
KS ci ratio: 1.134305e-01	ci left: 1.813503e-03	ci right 2.033129e-03	k: 1191	n:620000
ZNF259   620000 perm   257 sec   (2413 perm/sec)   p_kst 1.920968e-03   p_cons 5.104403e-01   p_joint 3.585484e-03

Joint ci ratio: 8.238292e-02	ci left: 3.433389e-03	ci right 3.729935e-03	k: 2255	n:630000
Cons ci ratio: 4.838182e-03	ci left: 5.090473e-01	ci right 5.115177e-01	k: 321478	n:630000
KS ci ratio: 1.126771e-01	ci left: 1.809395e-03	ci right 2.026972e-03	k: 1207	n:630000
ZNF259   630000 perm   264 sec   (2388 perm/sec)   p_kst 1.915873e-03   p_cons 5.102825e-01   p_joint 3.579365e-03

Joint ci ratio: 8.155500e-02	ci left: 3.450145e-03	ci right 3.745002e-03	k: 2301	n:640000
Cons ci ratio: 4.799047e-03	ci left: 5.091807e-01	ci right 5.116317e-01	k: 326660	n:640000
KS ci ratio: 1.117557e-01	ci left: 1.811496e-03	ci right 2.027427e-03	k: 1227	n:640000
ZNF259   640000 perm   270 sec   (2369 perm/sec)   p_kst 1.917188e-03   p_cons 5.104062e-01   p_joint 3.595312e-03

Joint ci ratio: 8.094206e-02	ci left: 3.449818e-03	ci right 3.742326e-03	k: 2336	n:650000
Cons ci ratio: 4.762151e-03	ci left: 5.091732e-01	ci right 5.116052e-01	k: 331753	n:650000
KS ci ratio: 1.110797e-01	ci left: 1.806061e-03	ci right 2.019956e-03	k: 1242	n:650000
ZNF259   650000 perm   277 sec   (2348 perm/sec)   p_kst 1.910769e-03   p_cons 5.103892e-01   p_joint 3.593846e-03

Joint ci ratio: 8.013954e-02	ci left: 3.467327e-03	ci right 3.758269e-03	k: 2383	n:660000
Cons ci ratio: 4.724560e-03	ci left: 5.093280e-01	ci right 5.117416e-01	k: 336953	n:660000
KS ci ratio: 1.100657e-01	ci left: 1.812581e-03	ci right 2.025162e-03	k: 1265	n:660000
ZNF259   660000 perm   284 sec   (2328 perm/sec)   p_kst 1.916667e-03   p_cons 5.105348e-01   p_joint 3.610606e-03

Joint ci ratio: 7.955773e-02	ci left: 3.466771e-03	ci right 3.755457e-03	k: 2418	n:670000
Cons ci ratio: 4.689776e-03	ci left: 5.092724e-01	ci right 5.116678e-01	k: 342015	n:670000
KS ci ratio: 1.092916e-01	ci left: 1.811656e-03	ci right 2.022538e-03	k: 1283	n:670000
ZNF259   670000 perm   290 sec   (2308 perm/sec)   p_kst 1.914925e-03   p_cons 5.104701e-01   p_joint 3.608955e-03

Joint ci ratio: 1.087850e-01	ci left: 1.802180e-03	ci right 2.010924e-03	k: 1295	n:680000
Cons ci ratio: 4.655216e-03	ci left: 5.092758e-01	ci right 5.116535e-01	k: 347116	n:680000
KS ci ratio: 1.087850e-01	ci left: 1.802180e-03	ci right 2.010924e-03	k: 1295	n:680000
ZNF259   680000 perm   297 sec   (2288 perm/sec)   p_kst 1.904412e-03   p_cons 5.104647e-01   p_joint 1.904412e-03

Joint ci ratio: 7.835221e-02	ci left: 3.472835e-03	ci right 3.757444e-03	k: 2493	n:690000
Cons ci ratio: 4.621837e-03	ci left: 5.092328e-01	ci right 5.115932e-01	k: 352185	n:690000
KS ci ratio: 1.076686e-01	ci left: 1.814133e-03	ci right 2.021968e-03	k: 1322	n:690000
ZNF259   690000 perm   304 sec   (2268 perm/sec)   p_kst 1.915942e-03   p_cons 5.104130e-01   p_joint 3.613043e-03

Joint ci ratio: 1.070236e-01	ci left: 1.810460e-03	ci right 2.016554e-03	k: 1338	n:700000
Cons ci ratio: 4.588078e-03	ci left: 5.093096e-01	ci right 5.116531e-01	k: 357337	n:700000
KS ci ratio: 1.070236e-01	ci left: 1.810460e-03	ci right 2.016554e-03	k: 1338	n:700000
ZNF259   700000 perm   311 sec   (2248 perm/sec)   p_kst 1.911429e-03   p_cons 5.104814e-01   p_joint 1.911429e-03

Joint ci ratio: 1.063508e-01	ci left: 1.808265e-03	ci right 2.012734e-03	k: 1355	n:710000
Cons ci ratio: 4.555702e-03	ci left: 5.093125e-01	ci right 5.116395e-01	k: 362438	n:710000
KS ci ratio: 1.063508e-01	ci left: 1.808265e-03	ci right 2.012734e-03	k: 1355	n:710000
ZNF259   710000 perm   318 sec   (2229 perm/sec)   p_kst 1.908451e-03   p_cons 5.104761e-01   p_joint 1.908451e-03

Joint ci ratio: 1.054982e-01	ci left: 1.812897e-03	ci right 2.016144e-03	k: 1377	n:720000
Cons ci ratio: 4.524354e-03	ci left: 5.092765e-01	ci right 5.115873e-01	k: 367511	n:720000
KS ci ratio: 1.054982e-01	ci left: 1.812897e-03	ci right 2.016144e-03	k: 1377	n:720000
ZNF259   720000 perm   326 sec   (2211 perm/sec)   p_kst 1.912500e-03   p_cons 5.104319e-01   p_joint 1.912500e-03

Joint ci ratio: 1.049290e-01	ci left: 1.808070e-03	ci right 2.009614e-03	k: 1392	n:730000
Cons ci ratio: 4.493767e-03	ci left: 5.092279e-01	ci right 5.115227e-01	k: 372574	n:730000
KS ci ratio: 1.049290e-01	ci left: 1.808070e-03	ci right 2.009614e-03	k: 1392	n:730000
ZNF259   730000 perm   333 sec   (2193 perm/sec)   p_kst 1.906849e-03   p_cons 5.103753e-01   p_joint 1.906849e-03

Joint ci ratio: 1.037797e-01	ci left: 1.824436e-03	ci right 2.025441e-03	k: 1423	n:740000
Cons ci ratio: 4.462887e-03	ci left: 5.092819e-01	ci right 5.115612e-01	k: 377712	n:740000
KS ci ratio: 1.037797e-01	ci left: 1.824436e-03	ci right 2.025441e-03	k: 1423	n:740000
ZNF259   740000 perm   340 sec   (2175 perm/sec)   p_kst 1.922973e-03   p_cons 5.104216e-01   p_joint 1.922973e-03

Joint ci ratio: 1.032018e-01	ci left: 1.820891e-03	ci right 2.020321e-03	k: 1439	n:750000
Cons ci ratio: 4.432801e-03	ci left: 5.093160e-01	ci right 5.115800e-01	k: 382836	n:750000
KS ci ratio: 1.032018e-01	ci left: 1.820891e-03	ci right 2.020321e-03	k: 1439	n:750000
ZNF259   750000 perm   348 sec   (2157 perm/sec)   p_kst 1.918667e-03   p_cons 5.104480e-01   p_joint 1.918667e-03

Joint ci ratio: 1.022821e-01	ci left: 1.830263e-03	ci right 2.028827e-03	k: 1465	n:760000
Cons ci ratio: 4.403709e-03	ci left: 5.093044e-01	ci right 5.115534e-01	k: 387926	n:760000
KS ci ratio: 1.022821e-01	ci left: 1.830263e-03	ci right 2.028827e-03	k: 1465	n:760000
ZNF259   760000 perm   355 sec   (2140 perm/sec)   p_kst 1.927632e-03   p_cons 5.104289e-01   p_joint 1.927632e-03

Joint ci ratio: 7.386678e-02	ci left: 3.509513e-03	ci right 3.779956e-03	k: 2805	n:770000
Cons ci ratio: 4.374808e-03	ci left: 5.093360e-01	ci right 5.115704e-01	k: 393049	n:770000
KS ci ratio: 1.016257e-01	ci left: 1.830540e-03	ci right 2.027783e-03	k: 1484	n:770000
ZNF259   770000 perm   363 sec   (2120 perm/sec)   p_kst 1.927273e-03   p_cons 5.104532e-01   p_joint 3.642857e-03

Joint ci ratio: 7.331984e-02	ci left: 3.517375e-03	ci right 3.786332e-03	k: 2847	n:780000
Cons ci ratio: 4.346814e-03	ci left: 5.093271e-01	ci right 5.115471e-01	k: 398141	n:780000
KS ci ratio: 1.009817e-01	ci left: 1.830813e-03	ci right 2.026761e-03	k: 1503	n:780000
ZNF259   780000 perm   371 sec   (2103 perm/sec)   p_kst 1.926923e-03   p_cons 5.104372e-01   p_joint 3.650000e-03

Joint ci ratio: 7.279750e-02	ci left: 3.523802e-03	ci right 3.791250e-03	k: 2888	n:790000
Cons ci ratio: 4.319427e-03	ci left: 5.093097e-01	ci right 5.115156e-01	k: 403226	n:790000
KS ci ratio: 1.002839e-01	ci left: 1.833552e-03	ci right 2.028357e-03	k: 1524	n:790000
ZNF259   790000 perm   379 sec   (2087 perm/sec)   p_kst 1.929114e-03   p_cons 5.104127e-01   p_joint 3.655696e-03

Joint ci ratio: 7.229856e-02	ci left: 3.528848e-03	ci right 3.794766e-03	k: 2928	n:800000
Cons ci ratio: 4.292594e-03	ci left: 5.092877e-01	ci right 5.114798e-01	k: 408307	n:800000
KS ci ratio: 9.963267e-02	ci left: 1.835008e-03	ci right 2.028627e-03	k: 1544	n:800000
ZNF259   800000 perm   386 sec   (2071 perm/sec)   p_kst 1.930000e-03   p_cons 5.103838e-01   p_joint 3.660000e-03

Outputting figure to mutsig2_images.part000000000196/ZNF259.2_1436_800000_0.00193_0.51038_0.00366.png
                gene_name: ZNF259
               theta_stop: 0.100 
                    nperm: 800000 
                     p_ks: 0.0019 
        ci_ks_bounds_left: 0.0018 
       ci_ks_bounds_right: 0.0020 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.0037 
     ci_joint_bounds_left: 0.0035 
    ci_joint_bounds_right: 0.0038 

Current progress: 86 percent done.
ZNF268
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.631092e-01	ci left: 5.013112e-02	ci right 5.913054e-02	k: 545	n:10000
Cons ci ratio: 1.529928e-01	ci left: 5.686952e-02	ci right 6.638783e-02	k: 615	n:10000
KS ci ratio: 4.066371e-02	ci left: 4.717634e-01	ci right 4.914473e-01	k: 4816	n:10000
ZNF268   10000 perm   2 sec   (6408 perm/sec)   p_kst 4.816000e-01   p_cons 6.150000e-02   p_joint 5.450000e-02

Joint ci ratio: 1.194431e-01	ci left: 4.804007e-02	ci right 5.419126e-02	k: 1021	n:20000
Cons ci ratio: 1.057364e-01	ci left: 6.089032e-02	ci right 6.773701e-02	k: 1285	n:20000
KS ci ratio: 2.855791e-02	ci left: 4.781012e-01	ci right 4.920032e-01	k: 9701	n:20000
ZNF268   20000 perm   4 sec   (5661 perm/sec)   p_kst 4.850500e-01   p_cons 6.425000e-02   p_joint 5.105000e-02

Joint ci ratio: 9.208146e-02	ci left: 5.433761e-02	ci right 5.961526e-02	k: 1708	n:30000
Cons ci ratio: 9.202437e-02	ci left: 5.440283e-02	ci right 5.968336e-02	k: 1710	n:30000
KS ci ratio: 2.324427e-02	ci left: 4.809623e-01	ci right 4.923070e-01	k: 14599	n:30000
ZNF268   30000 perm   6 sec   (5437 perm/sec)   p_kst 4.866333e-01   p_cons 5.700000e-02   p_joint 5.693333e-02

Outputting figure to mutsig2_images.part000000000196/ZNF268.2_1319_30000_0.48663_0.057_0.056933.png
                gene_name: ZNF268
               theta_stop: 0.092 
                    nperm: 30000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.057 
      ci_cons_bounds_left: 0.054 
     ci_cons_bounds_right: 0.060 
                  p_joint: 0.057 
     ci_joint_bounds_left: 0.054 
    ci_joint_bounds_right: 0.060 

Current progress: 88 percent done.
ZNF276
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.122974e-02	ci left: 4.648713e-01	ci right 4.845434e-01	k: 4747	n:10000
Cons ci ratio: 6.247168e-02	ci left: 2.735913e-01	ci right 2.913356e-01	k: 2824	n:10000
KS ci ratio: 7.635134e-02	ci left: 2.005737e-01	ci right 2.165964e-01	k: 2085	n:10000
ZNF276   10000 perm   2 sec   (6163 perm/sec)   p_kst 2.085000e-01   p_cons 2.824000e-01   p_joint 4.747000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF276.2_1889_10000_0.2085_0.2824_0.4747.png
                gene_name: ZNF276
               theta_stop: 0.076 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 89 percent done.
ZNF277
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.194986e-02	ci left: 7.528195e-01	ci right 7.696281e-01	k: 7613	n:10000
Cons ci ratio: 1.909731e-02	ci left: 8.003440e-01	ci right 8.158761e-01	k: 8082	n:10000
KS ci ratio: 3.688720e-02	ci left: 5.204606e-01	ci right 5.401218e-01	k: 5303	n:10000
ZNF277   10000 perm   2 sec   (6377 perm/sec)   p_kst 5.303000e-01   p_cons 8.082000e-01   p_joint 7.613000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF277.2_1401_10000_0.5303_0.8082_0.7613.png
                gene_name: ZNF277
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 90 percent done.
ZNF30
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.857206e-03	ci left: 9.357874e-01	ci right 9.451540e-01	k: 9406	n:10000
Cons ci ratio: 3.747619e-02	ci left: 5.125547e-01	ci right 5.322323e-01	k: 5224	n:10000
KS ci ratio: 5.701213e-02	ci left: 3.117537e-01	ci right 3.301507e-01	k: 3209	n:10000
ZNF30   10000 perm   2 sec   (6313 perm/sec)   p_kst 3.209000e-01   p_cons 5.224000e-01   p_joint 9.406000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF30.2_1891_10000_0.3209_0.5224_0.9406.png
                gene_name: ZNF30
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.94 
     ci_joint_bounds_left: 0.94 
    ci_joint_bounds_right: 0.95 

Current progress: 91 percent done.
ZNF302
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.269431e-02	ci left: 5.799842e-01	ci right 5.993635e-01	k: 5897	n:10000
Cons ci ratio: 4.300748e-02	ci left: 4.439070e-01	ci right 4.635200e-01	k: 4537	n:10000
KS ci ratio: 2.699424e-02	ci left: 6.690435e-01	ci right 6.874525e-01	k: 6783	n:10000
ZNF302   10000 perm   2 sec   (6466 perm/sec)   p_kst 6.783000e-01   p_cons 4.537000e-01   p_joint 5.897000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF302.2_1216_10000_0.6783_0.4537_0.5897.png
                gene_name: ZNF302
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 92 percent done.
ZNF319
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.920559e-02	ci left: 2.344220e-01	ci right 2.513280e-01	k: 2428	n:10000
Cons ci ratio: 7.295982e-02	ci left: 2.157611e-01	ci right 2.322000e-01	k: 2239	n:10000
KS ci ratio: 7.934133e-02	ci left: 1.883574e-01	ci right 2.040200e-01	k: 1961	n:10000
ZNF319   10000 perm   2 sec   (6359 perm/sec)   p_kst 1.961000e-01   p_cons 2.239000e-01   p_joint 2.428000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF319.2_1753_10000_0.1961_0.2239_0.2428.png
                gene_name: ZNF319
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.23 
    ci_joint_bounds_right: 0.25 

Current progress: 94 percent done.
ZNF323
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.363278e-02	ci left: 3.387587e-01	ci right 3.575298e-01	k: 3481	n:10000
Cons ci ratio: 6.401693e-02	ci left: 2.638896e-01	ci right 2.814430e-01	k: 2726	n:10000
KS ci ratio: 4.550381e-02	ci left: 4.161812e-01	ci right 4.356620e-01	k: 4259	n:10000
ZNF323   10000 perm   1 sec   (6814 perm/sec)   p_kst 4.259000e-01   p_cons 2.726000e-01   p_joint 3.481000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF323.2_1233_10000_0.4259_0.2726_0.3481.png
                gene_name: ZNF323
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 95 percent done.
ZNF324
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.832224e-02	ci left: 3.871924e-01	ci right 4.064677e-01	k: 3968	n:10000
KS ci ratio: 1.048147e-01	ci left: 1.162323e-01	ci right 1.291883e-01	k: 1226	n:10000
ZNF324   10000 perm   2 sec   (6436 perm/sec)   p_kst 1.226000e-01   p_cons 3.968000e-01   p_joint 1

Joint ci ratio: 3.937113e-02	ci left: 3.248265e-01	ci right 3.379226e-01	k: 6627	n:20000
Cons ci ratio: 3.409389e-02	ci left: 3.911067e-01	ci right 4.047230e-01	k: 7958	n:20000
KS ci ratio: 7.353701e-02	ci left: 1.198066e-01	ci right 1.290029e-01	k: 2487	n:20000
ZNF324   20000 perm   4 sec   (5705 perm/sec)   p_kst 1.243500e-01   p_cons 3.979000e-01   p_joint 3.313500e-01

Outputting figure to mutsig2_images.part000000000196/ZNF324.2_1674_20000_0.12435_0.3979_0.33135.png
                gene_name: ZNF324
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.12 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 96 percent done.
ZNF331
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.010044e-03	ci left: 9.559730e-01	ci right 9.637562e-01	k: 9600	n:10000
KS ci ratio: 4.579340e-02	ci left: 4.130914e-01	ci right 4.325536e-01	k: 4228	n:10000
ZNF331   10000 perm   2 sec   (6543 perm/sec)   p_kst 4.228000e-01   p_cons 9.600000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF331.2_1404_10000_0.4228_0.96_1.png
                gene_name: ZNF331
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.96 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 98 percent done.
ZNF341
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.844114e-02	ci left: 4.998504e-01	ci right 5.195439e-01	k: 5097	n:10000
Cons ci ratio: 5.581766e-02	ci left: 3.209831e-01	ci right 3.395159e-01	k: 3302	n:10000
KS ci ratio: 4.145358e-02	ci left: 4.621749e-01	ci right 4.818414e-01	k: 4720	n:10000
ZNF341   10000 perm   2 sec   (5847 perm/sec)   p_kst 4.720000e-01   p_cons 3.302000e-01   p_joint 5.097000e-01

Outputting figure to mutsig2_images.part000000000196/ZNF341.2_2604_10000_0.472_0.3302_0.5097.png
                gene_name: ZNF341
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 99 percent done.
ZNF35
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.135385e-02	ci left: 6.001585e-01	ci right 6.193775e-01	k: 6098	n:10000
KS ci ratio: 6.771470e-02	ci left: 2.424265e-01	ci right 2.595188e-01	k: 2509	n:10000
ZNF35   10000 perm   2 sec   (6377 perm/sec)   p_kst 2.509000e-01   p_cons 6.098000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000196/ZNF35.2_1596_10000_0.2509_0.6098_1.png
                gene_name: ZNF35
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000196
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 196 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1559>
Subject: Job 9894216: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1559>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000197> was used as the working directory.
Started at Sat Oct  6 00:36:39 2012
Results reported at Sat Oct  6 04:05:13 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000197.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000197.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 197  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000197.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :  13346.65 sec.
    Max Memory :      3595 MB
    Max Swap   :      5999 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
197
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 197
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 197: processing genes 17670 - 17760
Calculating significance of each gene.
Using projection method.
17670	ZNF391	3.119478e-01
17671	ZNF394	8.593230e-01
17672	ZNF395	3.350020e-01
17673	ZNF396	7.549492e-01
17674	ZNF397	4.521573e-01
17675	ZNF397OS	1
17676	ZNF398	8.382396e-01
17677	ZNF404	4.193538e-01
17678	ZNF407	7.196256e-01
17679	ZNF408	5.280798e-01
17680	ZNF41	2.405874e-01
17681	ZNF410	2.443481e-01
17682	ZNF414	1
17683	ZNF415	7.768352e-03
17684	ZNF416	5.547719e-01
17685	ZNF417	5.710761e-01
17686	ZNF418	4.069415e-01
17687	ZNF419	1.556861e-01
17688	ZNF420	6.431232e-03
17689	ZNF423	1.599162e-01
17690	ZNF425	5.799611e-01
17691	ZNF426	3.578982e-02
17692	ZNF428	4.484467e-01
17693	ZNF429	2.094184e-03
17694	ZNF43	8.309321e-03
17695	ZNF430	8.969088e-02
17696	ZNF431	1.222632e-01
17697	ZNF432	5.419042e-01
17698	ZNF433	5.638541e-01
17699	ZNF434	2.567252e-01
17700	ZNF436	7.254368e-01
17701	ZNF438	7.101335e-01
17702	ZNF439	7.532815e-01
17703	ZNF44	3.674926e-02
17704	ZNF440	1.484819e-01
17705	ZNF441	7.747132e-01
17706	ZNF442	4.879851e-01
17707	ZNF443	6.996703e-02
17708	ZNF444	1
17709	ZNF445	5.901043e-01
17710	ZNF446	8.163285e-01
17711	ZNF449	4.767901e-01
17712	ZNF45	9.000451e-01
17713	ZNF451	9.336807e-02
17714	ZNF454	1.214944e-02
17715	ZNF460	9.284123e-01
17716	ZNF461	2.359524e-01
17717	ZNF462	7.546226e-01
17718	ZNF467	8.971888e-01
17719	ZNF468	3.939824e-01
17720	ZNF470	2.357272e-03
17721	ZNF471	1.135705e-02
17722	ZNF473	3.072933e-01
17723	ZNF474	2.241545e-03
17724	ZNF479	4.918580e-03
17725	ZNF48	1
17726	ZNF480	4.946057e-01
17727	ZNF483	3.954857e-02
17728	ZNF484	8.814176e-02
17729	ZNF485	6.753353e-01
17730	ZNF486	9.308491e-02
17731	ZNF488	2.761657e-01
17732	ZNF490	6.951942e-01
17733	ZNF491	7.040445e-02
17734	ZNF492	1.517939e-02
17735	ZNF493	1.529326e-01
17736	ZNF496	9.320248e-01
17737	ZNF497	1
17738	ZNF498	2.264653e-01
17739	ZNF500	6.889470e-01
17740	ZNF501	7.317626e-02
17741	ZNF502	4.883532e-02
17742	ZNF503	1
17743	ZNF506	1.459088e-01
17744	ZNF507	6.892368e-01
17745	ZNF510	2.913361e-01
17746	ZNF511	4.828515e-01
17747	ZNF512	1
17748	ZNF512B	8.582141e-01
17749	ZNF513	8.105064e-01
17750	ZNF514	5.443110e-01
17751	ZNF516	7.370292e-01
17752	ZNF517	4.971983e-01
17753	ZNF518A	9.243779e-02
17754	ZNF518B	6.129142e-01
17755	ZNF519	6.811140e-01
In gene ZNF521 the following bins exceed PROBCAP:
    COAD-AA-3561	categ 6	N = 3964    n = 1	mu =   1.72e-07
17756	ZNF521	1.904656e-03
17757	ZNF524	4.390205e-01
17758	ZNF526	9.650145e-01
17759	ZNF527	6.767114e-01
17760	ZNF528	8.560528e-03
Done

Running MutSig 2:
Scatter job 197: processing genes 17670 - 17760
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF407
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.826473e-02	ci left: 3.024292e-01	ci right 3.206807e-01	k: 3115	n:10000
Cons ci ratio: 9.121080e-02	ci left: 1.487429e-01	ci right 1.630582e-01	k: 1558	n:10000
KS ci ratio: 4.612326e-02	ci left: 4.096033e-01	ci right 4.290437e-01	k: 4193	n:10000
ZNF407   10000 perm   3 sec   (3047 perm/sec)   p_kst 4.193000e-01   p_cons 1.558000e-01   p_joint 3.115000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF407.15_6909_10000_0.4193_0.1558_0.3115.png
                gene_name: ZNF407
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 1 percent done.
ZNF521
Processing conservation and coverage...
Processing mutations... 
Skipping 1 mutations outside transcript range of this gene.
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.518041e-02	ci left: 3.260462e-01	ci right 3.446498e-01	k: 3353	n:10000
Cons ci ratio: 5.738033e-02	ci left: 3.089757e-01	ci right 3.273303e-01	k: 3181	n:10000
KS ci ratio: 7.430771e-02	ci left: 2.095461e-01	ci right 2.258187e-01	k: 2176	n:10000
ZNF521   10000 perm   3 sec   (3757 perm/sec)   p_kst 2.176000e-01   p_cons 3.181000e-01   p_joint 3.353000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF521.14_3964_10000_0.2176_0.3181_0.3353.png
                gene_name: ZNF521
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.34 

Current progress: 3 percent done.
ZNF423
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.402670e-02	ci left: 7.180521e-01	ci right 7.356156e-01	k: 7269	n:10000
Cons ci ratio: 2.443843e-02	ci left: 7.111875e-01	ci right 7.288841e-01	k: 7201	n:10000
KS ci ratio: 3.573329e-02	ci left: 5.362797e-01	ci right 5.558935e-01	k: 5461	n:10000
ZNF423   10000 perm   2 sec   (4236 perm/sec)   p_kst 5.461000e-01   p_cons 7.201000e-01   p_joint 7.269000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF423.14_3887_10000_0.5461_0.7201_0.7269.png
                gene_name: ZNF423
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 4 percent done.
ZNF479
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.773937e-02	ci left: 6.569607e-01	ci right 6.755424e-01	k: 6663	n:10000
Cons ci ratio: 6.285915e-02	ci left: 2.711159e-01	ci right 2.888125e-01	k: 2799	n:10000
KS ci ratio: 2.716754e-02	ci left: 6.662236e-01	ci right 6.846741e-01	k: 6755	n:10000
ZNF479   10000 perm   2 sec   (5379 perm/sec)   p_kst 6.755000e-01   p_cons 2.799000e-01   p_joint 6.663000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF479.13_1591_10000_0.6755_0.2799_0.6663.png
                gene_name: ZNF479
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 5 percent done.
ZNF462
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.420826e-02	ci left: 7.150233e-01	ci right 7.326461e-01	k: 7239	n:10000
Cons ci ratio: 4.243091e-02	ci left: 4.505937e-01	ci right 4.702294e-01	k: 4604	n:10000
KS ci ratio: 3.463008e-02	ci left: 5.518081e-01	ci right 5.713560e-01	k: 5616	n:10000
ZNF462   10000 perm   3 sec   (3051 perm/sec)   p_kst 5.616000e-01   p_cons 4.604000e-01   p_joint 7.239000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF462.12_7569_10000_0.5616_0.4604_0.7239.png
                gene_name: ZNF462
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.56 
        ci_ks_bounds_left: 0.55 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.46 
      ci_cons_bounds_left: 0.45 
     ci_cons_bounds_right: 0.47 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.73 

Current progress: 7 percent done.
ZNF429
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.093384e-02	ci left: 6.065858e-01	ci right 6.257465e-01	k: 6162	n:10000
Cons ci ratio: 4.879990e-02	ci left: 3.825137e-01	ci right 4.017492e-01	k: 3921	n:10000
KS ci ratio: 4.361983e-02	ci left: 4.369227e-01	ci right 4.565083e-01	k: 4467	n:10000
ZNF429   10000 perm   2 sec   (4764 perm/sec)   p_kst 4.467000e-01   p_cons 3.921000e-01   p_joint 6.162000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF429.11_2041_10000_0.4467_0.3921_0.6162.png
                gene_name: ZNF429
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 8 percent done.
ZNF443
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.298648e-01	ci left: 7.805288e-02	ci right 8.899118e-02	k: 834	n:10000
Cons ci ratio: 2.452937e-02	ci left: 7.096736e-01	ci right 7.273989e-01	k: 7186	n:10000
KS ci ratio: 3.054647e-01	ci left: 1.372489e-02	ci right 1.876262e-02	k: 161	n:10000
ZNF443   10000 perm   2 sec   (5186 perm/sec)   p_kst 1.610000e-02   p_cons 7.186000e-01   p_joint 8.340000e-02

Joint ci ratio: 1.126358e-01	ci left: 5.387513e-02	ci right 6.035438e-02	k: 1141	n:20000
Cons ci ratio: 1.642996e-02	ci left: 7.338613e-01	ci right 7.460688e-01	k: 14800	n:20000
KS ci ratio: 2.198255e-01	ci left: 1.392826e-02	ci right 1.741462e-02	k: 312	n:20000
ZNF443   20000 perm   4 sec   (4518 perm/sec)   p_kst 1.560000e-02   p_cons 7.400000e-01   p_joint 5.705000e-02

Joint ci ratio: 8.560127e-02	ci left: 6.252989e-02	ci right 6.815464e-02	k: 1959	n:30000
Cons ci ratio: 1.348711e-02	ci left: 7.329175e-01	ci right 7.429030e-01	k: 22138	n:30000
KS ci ratio: 1.771081e-01	ci left: 1.464237e-02	ci right 1.751912e-02	k: 481	n:30000
ZNF443   30000 perm   7 sec   (4298 perm/sec)   p_kst 1.603333e-02   p_cons 7.379333e-01   p_joint 6.530000e-02

Joint ci ratio: 7.838041e-02	ci left: 5.653872e-02	ci right 6.117558e-02	k: 2353	n:40000
Cons ci ratio: 1.162083e-02	ci left: 7.355711e-01	ci right 7.441940e-01	k: 29596	n:40000
KS ci ratio: 1.503958e-01	ci left: 1.544281e-02	ci right 1.797805e-02	k: 667	n:40000
ZNF443   40000 perm   10 sec   (4175 perm/sec)   p_kst 1.667500e-02   p_cons 7.399000e-01   p_joint 5.882500e-02

Joint ci ratio: 8.123300e-02	ci left: 4.268946e-02	ci right 4.632366e-02	k: 2224	n:50000
Cons ci ratio: 1.098217e-02	ci left: 7.141940e-01	ci right 7.221007e-01	k: 35908	n:50000
KS ci ratio: 1.353450e-01	ci left: 1.538222e-02	ci right 1.763442e-02	k: 824	n:50000
ZNF443   50000 perm   12 sec   (4091 perm/sec)   p_kst 1.648000e-02   p_cons 7.181600e-01   p_joint 4.448000e-02

Joint ci ratio: 7.676473e-02	ci left: 4.004890e-02	ci right 4.326229e-02	k: 2498	n:60000
Cons ci ratio: 9.978939e-03	ci left: 7.164219e-01	ci right 7.236235e-01	k: 43202	n:60000
KS ci ratio: 1.231737e-01	ci left: 1.557661e-02	ci right 1.763720e-02	k: 995	n:60000
ZNF443   60000 perm   15 sec   (4009 perm/sec)   p_kst 1.658333e-02   p_cons 7.200333e-01   p_joint 4.163333e-02

Joint ci ratio: 7.519582e-02	ci left: 3.596439e-02	ci right 3.878841e-02	k: 2615	n:70000
Cons ci ratio: 9.252242e-03	ci left: 7.160985e-01	ci right 7.227690e-01	k: 50361	n:70000
KS ci ratio: 1.135903e-01	ci left: 1.577752e-02	ci right 1.769141e-02	k: 1170	n:70000
ZNF443   70000 perm   18 sec   (3935 perm/sec)   p_kst 1.671429e-02   p_cons 7.194429e-01   p_joint 3.735714e-02

Joint ci ratio: 6.765411e-02	ci left: 3.891078e-02	ci right 4.164769e-02	k: 3221	n:80000
Cons ci ratio: 8.647834e-03	ci left: 7.166362e-01	ci right 7.228729e-01	k: 57581	n:80000
KS ci ratio: 1.064681e-01	ci left: 1.577464e-02	ci right 1.756066e-02	k: 1332	n:80000
ZNF443   80000 perm   21 sec   (3806 perm/sec)   p_kst 1.665000e-02   p_cons 7.197625e-01   p_joint 4.026250e-02

Joint ci ratio: 5.822703e-02	ci left: 4.654671e-02	ci right 4.934919e-02	k: 4314	n:90000
Cons ci ratio: 7.844108e-03	ci left: 7.321928e-01	ci right 7.379698e-01	k: 66158	n:90000
KS ci ratio: 1.002645e-01	ci left: 1.586201e-02	ci right 1.754712e-02	k: 1502	n:90000
ZNF443   90000 perm   24 sec   (3729 perm/sec)   p_kst 1.668889e-02   p_cons 7.350889e-01   p_joint 4.793333e-02

Joint ci ratio: 5.478711e-02	ci left: 4.736419e-02	ci right 5.004207e-02	k: 4869	n:100000
Cons ci ratio: 7.432767e-03	ci left: 7.328047e-01	ci right 7.382817e-01	k: 73555	n:100000
KS ci ratio: 9.460215e-02	ci left: 1.608084e-02	ci right 1.768736e-02	k: 1687	n:100000
ZNF443   100000 perm   27 sec   (3656 perm/sec)   p_kst 1.687000e-02   p_cons 7.355500e-01   p_joint 4.869000e-02

Outputting figure to mutsig2_images.part000000000197/ZNF443.11_2032_100000_0.01687_0.73555_0.04869.png
                gene_name: ZNF443
               theta_stop: 0.095 
                    nperm: 100000 
                     p_ks: 0.017 
        ci_ks_bounds_left: 0.016 
       ci_ks_bounds_right: 0.018 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.049 
     ci_joint_bounds_left: 0.047 
    ci_joint_bounds_right: 0.050 

Current progress: 10 percent done.
ZNF470
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.500759e-02	ci left: 3.274362e-01	ci right 3.460590e-01	k: 3367	n:10000
Cons ci ratio: 3.587766e-02	ci left: 5.342767e-01	ci right 5.538976e-01	k: 5441	n:10000
KS ci ratio: 7.340334e-02	ci left: 2.136891e-01	ci right 2.300732e-01	k: 2218	n:10000
ZNF470   10000 perm   2 sec   (4599 perm/sec)   p_kst 2.218000e-01   p_cons 5.441000e-01   p_joint 3.367000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF470.11_2170_10000_0.2218_0.5441_0.3367.png
                gene_name: ZNF470
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 11 percent done.
ZNF43
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.044241e-02	ci left: 7.780316e-01	ci right 7.942014e-01	k: 7862	n:10000
Cons ci ratio: 4.330361e-02	ci left: 4.405144e-01	ci right 4.601146e-01	k: 4503	n:10000
KS ci ratio: 6.712391e-03	ci left: 9.681537e-01	ci right 9.747678e-01	k: 9716	n:10000
ZNF43   10000 perm   2 sec   (4801 perm/sec)   p_kst 9.716000e-01   p_cons 4.503000e-01   p_joint 7.862000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF43.10_2446_10000_0.9716_0.4503_0.7862.png
                gene_name: ZNF43
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 12 percent done.
ZNF451
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.123610e-01	ci left: 1.023714e-01	ci right 1.146577e-01	k: 1084	n:10000
Cons ci ratio: 3.497592e-02	ci left: 5.468981e-01	ci right 5.664689e-01	k: 5567	n:10000
KS ci ratio: 1.903033e-01	ci left: 3.681611e-02	ci right 4.465430e-02	k: 406	n:10000
ZNF451   10000 perm   2 sec   (4420 perm/sec)   p_kst 4.060000e-02   p_cons 5.567000e-01   p_joint 1.084000e-01

Joint ci ratio: 7.408212e-02	ci left: 1.182322e-01	ci right 1.273777e-01	k: 2455	n:20000
Cons ci ratio: 2.379002e-02	ci left: 5.689150e-01	ci right 5.826630e-01	k: 11516	n:20000
KS ci ratio: 1.337139e-01	ci left: 3.843897e-02	ci right 4.399542e-02	k: 823	n:20000
ZNF451   20000 perm   5 sec   (3973 perm/sec)   p_kst 4.115000e-02   p_cons 5.758000e-01   p_joint 1.227500e-01

Joint ci ratio: 7.248206e-02	ci left: 8.560441e-02	ci right 9.207547e-02	k: 2664	n:30000
Cons ci ratio: 1.934280e-02	ci left: 5.722538e-01	ci right 5.834645e-01	k: 17336	n:30000
KS ci ratio: 1.055762e-01	ci left: 4.160929e-02	ci right 4.627955e-02	k: 1317	n:30000
ZNF451   30000 perm   8 sec   (3816 perm/sec)   p_kst 4.390000e-02   p_cons 5.778667e-01   p_joint 8.880000e-02

Joint ci ratio: 5.846706e-02	ci left: 9.806357e-02	ci right 1.039945e-01	k: 4040	n:40000
Cons ci ratio: 1.671178e-02	ci left: 5.741686e-01	ci right 5.838699e-01	k: 23161	n:40000
KS ci ratio: 9.122405e-02	ci left: 4.210859e-02	ci right 4.615793e-02	k: 1764	n:40000
ZNF451   40000 perm   11 sec   (3710 perm/sec)   p_kst 4.410000e-02   p_cons 5.790250e-01   p_joint 1.010000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF451.10_3246_40000_0.0441_0.57903_0.101.png
                gene_name: ZNF451
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.098 
    ci_joint_bounds_right: 0.10 

Current progress: 14 percent done.
ZNF471
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.056393e-02	ci left: 7.760050e-01	ci right 7.922292e-01	k: 7842	n:10000
Cons ci ratio: 5.402496e-02	ci left: 3.354805e-01	ci right 3.542099e-01	k: 3448	n:10000
KS ci ratio: 2.581993e-02	ci left: 6.882897e-01	ci right 7.063952e-01	k: 6974	n:10000
ZNF471   10000 perm   2 sec   (5619 perm/sec)   p_kst 6.974000e-01   p_cons 3.448000e-01   p_joint 7.842000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF471.10_1897_10000_0.6974_0.3448_0.7842.png
                gene_name: ZNF471
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.79 

Current progress: 15 percent done.
ZNF528
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.137882e-02	ci left: 4.630737e-01	ci right 4.827421e-01	k: 4729	n:10000
Cons ci ratio: 7.815390e-02	ci left: 1.930849e-01	ci right 2.088897e-01	k: 2009	n:10000
KS ci ratio: 2.929540e-02	ci left: 6.321112e-01	ci right 6.510063e-01	k: 6416	n:10000
ZNF528   10000 perm   2 sec   (4904 perm/sec)   p_kst 6.416000e-01   p_cons 2.009000e-01   p_joint 4.729000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF528.10_1903_10000_0.6416_0.2009_0.4729.png
                gene_name: ZNF528
               theta_stop: 0.078 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.19 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.47 
     ci_joint_bounds_left: 0.46 
    ci_joint_bounds_right: 0.48 

Current progress: 16 percent done.
ZNF420
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.881972e-02	ci left: 4.949504e-01	ci right 5.146468e-01	k: 5048	n:10000
Cons ci ratio: 6.216491e-02	ci left: 2.755719e-01	ci right 2.933539e-01	k: 2844	n:10000
KS ci ratio: 4.303352e-02	ci left: 4.436076e-01	ci right 4.632196e-01	k: 4534	n:10000
ZNF420   10000 perm   2 sec   (5282 perm/sec)   p_kst 4.534000e-01   p_cons 2.844000e-01   p_joint 5.048000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF420.9_2079_10000_0.4534_0.2844_0.5048.png
                gene_name: ZNF420
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 18 percent done.
ZNF454
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.076832e-02	ci left: 9.247196e-01	ci right 9.348283e-01	k: 9299	n:10000
Cons ci ratio: 4.079421e-02	ci left: 4.701650e-01	ci right 4.898466e-01	k: 4800	n:10000
KS ci ratio: 2.591170e-02	ci left: 6.867776e-01	ci right 7.049082e-01	k: 6959	n:10000
ZNF454   10000 perm   2 sec   (5519 perm/sec)   p_kst 6.959000e-01   p_cons 4.800000e-01   p_joint 9.299000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF454.9_1585_10000_0.6959_0.48_0.9299.png
                gene_name: ZNF454
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.70 
        ci_ks_bounds_left: 0.69 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 19 percent done.
ZNF483
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.480849e-02	ci left: 7.050317e-01	ci right 7.228435e-01	k: 7140	n:10000
Cons ci ratio: 5.345604e-02	ci left: 3.402490e-01	ci right 3.590387e-01	k: 3496	n:10000
KS ci ratio: 3.002544e-02	ci left: 6.206514e-01	ci right 6.396727e-01	k: 6302	n:10000
ZNF483   10000 perm   2 sec   (5105 perm/sec)   p_kst 6.302000e-01   p_cons 3.496000e-01   p_joint 7.140000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF483.9_2309_10000_0.6302_0.3496_0.714.png
                gene_name: ZNF483
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.71 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.72 

Current progress: 21 percent done.
ZNF484
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.808135e-02	ci left: 5.045512e-01	ci right 5.242404e-01	k: 5144	n:10000
Cons ci ratio: 3.506812e-02	ci left: 5.455956e-01	ci right 5.651722e-01	k: 5554	n:10000
KS ci ratio: 5.055356e-02	ci left: 3.658968e-01	ci right 3.849758e-01	k: 3754	n:10000
ZNF484   10000 perm   2 sec   (5058 perm/sec)   p_kst 3.754000e-01   p_cons 5.554000e-01   p_joint 5.144000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF484.9_2575_10000_0.3754_0.5554_0.5144.png
                gene_name: ZNF484
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 22 percent done.
ZNF491
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.476226e-02	ci left: 3.294222e-01	ci right 3.480718e-01	k: 3387	n:10000
Cons ci ratio: 1.427232e-02	ci left: 8.765385e-01	ci right 8.892375e-01	k: 8830	n:10000
KS ci ratio: 8.106743e-02	ci left: 1.817616e-01	ci right 1.972197e-01	k: 1894	n:10000
ZNF491   10000 perm   2 sec   (5708 perm/sec)   p_kst 1.894000e-01   p_cons 8.830000e-01   p_joint 3.387000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF491.9_1318_10000_0.1894_0.883_0.3387.png
                gene_name: ZNF491
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 23 percent done.
ZNF432
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.774183e-02	ci left: 3.929674e-01	ci right 4.122893e-01	k: 4026	n:10000
Cons ci ratio: 2.010768e-02	ci left: 7.836063e-01	ci right 7.996234e-01	k: 7917	n:10000
KS ci ratio: 7.876742e-02	ci left: 1.906225e-01	ci right 2.063536e-01	k: 1984	n:10000
ZNF432   10000 perm   2 sec   (4877 perm/sec)   p_kst 1.984000e-01   p_cons 7.917000e-01   p_joint 4.026000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF432.8_1975_10000_0.1984_0.7917_0.4026.png
                gene_name: ZNF432
               theta_stop: 0.079 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.78 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 25 percent done.
ZNF439
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.882633e-02	ci left: 1.557113e-01	ci right 1.702856e-01	k: 1629	n:10000
Cons ci ratio: 1.292493e-02	ci left: 8.960051e-01	ci right 9.077596e-01	k: 9020	n:10000
KS ci ratio: 1.515559e-01	ci left: 5.793006e-02	ci right 6.752661e-02	k: 626	n:10000
ZNF439   10000 perm   2 sec   (5999 perm/sec)   p_kst 6.260000e-02   p_cons 9.020000e-01   p_joint 1.629000e-01

Joint ci ratio: 5.959551e-02	ci left: 1.725232e-01	ci right 1.831706e-01	k: 3556	n:20000
Cons ci ratio: 8.784959e-03	ci left: 9.046744e-01	ci right 9.127063e-01	k: 18175	n:20000
KS ci ratio: 1.084663e-01	ci left: 5.796573e-02	ci right 6.466251e-02	k: 1225	n:20000
ZNF439   20000 perm   4 sec   (5255 perm/sec)   p_kst 6.125000e-02   p_cons 9.087500e-01   p_joint 1.778000e-01

Joint ci ratio: 4.841437e-02	ci left: 1.749737e-01	ci right 1.836885e-01	k: 5379	n:30000
Cons ci ratio: 7.193356e-03	ci left: 9.049440e-01	ci right 9.115100e-01	k: 27248	n:30000
KS ci ratio: 8.897606e-02	ci left: 5.805662e-02	ci right 6.349550e-02	k: 1822	n:30000
ZNF439   30000 perm   6 sec   (4966 perm/sec)   p_kst 6.073333e-02   p_cons 9.082667e-01   p_joint 1.793000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF439.8_1512_30000_0.060733_0.90827_0.1793.png
                gene_name: ZNF439
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.061 
        ci_ks_bounds_left: 0.058 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.90 
     ci_cons_bounds_right: 0.91 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 26 percent done.
ZNF474
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.160559e-02	ci left: 7.585873e-01	ci right 7.752569e-01	k: 7670	n:10000
Cons ci ratio: 1.508864e-02	ci left: 8.642720e-01	ci right 8.775111e-01	k: 8710	n:10000
KS ci ratio: 3.576934e-02	ci left: 5.357789e-01	ci right 5.553945e-01	k: 5456	n:10000
ZNF474   10000 perm   2 sec   (5870 perm/sec)   p_kst 5.456000e-01   p_cons 8.710000e-01   p_joint 7.670000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF474.8_1099_10000_0.5456_0.871_0.767.png
                gene_name: ZNF474
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.88 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.78 

Current progress: 27 percent done.
ZNF492
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.861100e-02	ci left: 6.429732e-01	ci right 6.617380e-01	k: 6524	n:10000
Cons ci ratio: 2.137588e-02	ci left: 7.624337e-01	ci right 7.790083e-01	k: 7708	n:10000
KS ci ratio: 4.715155e-02	ci left: 3.989431e-01	ci right 4.183102e-01	k: 4086	n:10000
ZNF492   10000 perm   2 sec   (5490 perm/sec)   p_kst 4.086000e-01   p_cons 7.708000e-01   p_joint 6.524000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF492.8_1608_10000_0.4086_0.7708_0.6524.png
                gene_name: ZNF492
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 29 percent done.
ZNF518A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.000136e-02	ci left: 1.857974e-01	ci right 2.013815e-01	k: 1935	n:10000
Cons ci ratio: 5.586816e-02	ci left: 3.205861e-01	ci right 3.391131e-01	k: 3298	n:10000
KS ci ratio: 8.375026e-02	ci left: 1.721207e-01	ci right 1.872663e-01	k: 1796	n:10000
ZNF518A   10000 perm   3 sec   (3954 perm/sec)   p_kst 1.796000e-01   p_cons 3.298000e-01   p_joint 1.935000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF518A.8_4455_10000_0.1796_0.3298_0.1935.png
                gene_name: ZNF518A
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 30 percent done.
ZNF415
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.305635e-02	ci left: 1.436425e-01	ci right 1.577616e-01	k: 1506	n:10000
Cons ci ratio: 6.092823e-03	ci left: 9.733385e-01	ci right 9.793796e-01	k: 9765	n:10000
KS ci ratio: 1.273839e-01	ci left: 8.096444e-02	ci right 9.207781e-02	k: 864	n:10000
ZNF415   10000 perm   2 sec   (4568 perm/sec)   p_kst 8.640000e-02   p_cons 9.765000e-01   p_joint 1.506000e-01

Joint ci ratio: 6.678307e-02	ci left: 1.420204e-01	ci right 1.518825e-01	k: 2938	n:20000
Cons ci ratio: 4.451602e-03	ci left: 9.726368e-01	ci right 9.770237e-01	k: 19498	n:20000
KS ci ratio: 8.931503e-02	ci left: 8.391296e-02	ci right 9.180734e-02	k: 1756	n:20000
ZNF415   20000 perm   5 sec   (4120 perm/sec)   p_kst 8.780000e-02   p_cons 9.749000e-01   p_joint 1.469000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF415.7_1699_20000_0.0878_0.9749_0.1469.png
                gene_name: ZNF415
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.088 
        ci_ks_bounds_left: 0.084 
       ci_ks_bounds_right: 0.092 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.98 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 32 percent done.
ZNF419
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.205248e-02	ci left: 7.510997e-01	ci right 7.679489e-01	k: 7596	n:10000
Cons ci ratio: 2.074603e-02	ci left: 7.729656e-01	ci right 7.892703e-01	k: 7812	n:10000
KS ci ratio: 3.371796e-02	ci left: 5.649396e-01	ci right 5.844169e-01	k: 5747	n:10000
ZNF419   10000 perm   2 sec   (4889 perm/sec)   p_kst 5.747000e-01   p_cons 7.812000e-01   p_joint 7.596000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF419.7_1556_10000_0.5747_0.7812_0.7596.png
                gene_name: ZNF419
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 33 percent done.
ZNF44
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.321031e-02	ci left: 5.723604e-01	ci right 5.917917e-01	k: 5821	n:10000
Cons ci ratio: 2.672253e-02	ci left: 6.734756e-01	ci right 6.918179e-01	k: 6827	n:10000
KS ci ratio: 5.404887e-02	ci left: 3.352819e-01	ci right 3.540087e-01	k: 3446	n:10000
ZNF44   10000 perm   2 sec   (4699 perm/sec)   p_kst 3.446000e-01   p_cons 6.827000e-01   p_joint 5.821000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF44.7_2012_10000_0.3446_0.6827_0.5821.png
                gene_name: ZNF44
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 34 percent done.
ZNF445
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.832774e-02	ci left: 6.475005e-01	ci right 6.662080e-01	k: 6569	n:10000
Cons ci ratio: 4.669845e-03	ci left: 9.836084e-01	ci right 9.883022e-01	k: 9861	n:10000
KS ci ratio: 4.627510e-02	ci left: 4.080090e-01	ci right 4.274390e-01	k: 4177	n:10000
ZNF445   10000 perm   2 sec   (4522 perm/sec)   p_kst 4.177000e-01   p_cons 9.861000e-01   p_joint 6.569000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF445.7_3120_10000_0.4177_0.9861_0.6569.png
                gene_name: ZNF445
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 36 percent done.
ZNF426
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.935709e-02	ci left: 3.771392e-01	ci right 3.963268e-01	k: 3867	n:10000
Cons ci ratio: 1.002557e-01	ci left: 1.259128e-01	ci right 1.393020e-01	k: 1325	n:10000
KS ci ratio: 2.690152e-02	ci left: 6.705543e-01	ci right 6.889408e-01	k: 6798	n:10000
ZNF426   10000 perm   2 sec   (5594 perm/sec)   p_kst 6.798000e-01   p_cons 1.325000e-01   p_joint 3.867000e-01

Joint ci ratio: 4.185679e-02	ci left: 2.984241e-01	ci right 3.112327e-01	k: 6096	n:20000
Cons ci ratio: 7.064720e-02	ci left: 1.286671e-01	ci right 1.381397e-01	k: 2667	n:20000
KS ci ratio: 1.928336e-02	ci left: 6.673029e-01	ci right 6.803465e-01	k: 13477	n:20000
ZNF426   20000 perm   4 sec   (4930 perm/sec)   p_kst 6.738500e-01   p_cons 1.333500e-01   p_joint 3.048000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF426.6_1689_20000_0.67385_0.13335_0.3048.png
                gene_name: ZNF426
               theta_stop: 0.071 
                    nperm: 20000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.31 

Current progress: 37 percent done.
ZNF431
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.735360e-02	ci left: 6.632026e-01	ci right 6.816968e-01	k: 6725	n:10000
Cons ci ratio: 7.128045e-02	ci left: 2.238545e-01	ci right 2.405018e-01	k: 2321	n:10000
KS ci ratio: 2.154515e-02	ci left: 7.595994e-01	ci right 7.762442e-01	k: 7680	n:10000
ZNF431   10000 perm   2 sec   (5614 perm/sec)   p_kst 7.680000e-01   p_cons 2.321000e-01   p_joint 6.725000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF431.6_1751_10000_0.768_0.2321_0.6725.png
                gene_name: ZNF431
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 38 percent done.
ZNF434
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.650160e-02	ci left: 8.423403e-01	ci right 8.564555e-01	k: 8495	n:10000
Cons ci ratio: 1.963134e-02	ci left: 7.915161e-01	ci right 8.073091e-01	k: 7995	n:10000
KS ci ratio: 2.887637e-02	ci left: 6.387484e-01	ci right 6.575652e-01	k: 6482	n:10000
ZNF434   10000 perm   2 sec   (5567 perm/sec)   p_kst 6.482000e-01   p_cons 7.995000e-01   p_joint 8.495000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF434.6_1470_10000_0.6482_0.7995_0.8495.png
                gene_name: ZNF434
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.86 

Current progress: 40 percent done.
ZNF442
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.669974e-02	ci left: 3.141351e-01	ci right 3.325679e-01	k: 3233	n:10000
Cons ci ratio: 3.580541e-02	ci left: 5.352782e-01	ci right 5.548955e-01	k: 5451	n:10000
KS ci ratio: 9.169905e-02	ci left: 1.473694e-01	ci right 1.616325e-01	k: 1544	n:10000
ZNF442   10000 perm   2 sec   (5847 perm/sec)   p_kst 1.544000e-01   p_cons 5.451000e-01   p_joint 3.233000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF442.6_1900_10000_0.1544_0.5451_0.3233.png
                gene_name: ZNF442
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 41 percent done.
ZNF473
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.881310e-02	ci left: 6.397543e-01	ci right 6.585588e-01	k: 6492	n:10000
KS ci ratio: 1.360105e-02	ci left: 8.863668e-01	ci right 8.986035e-01	k: 8926	n:10000
ZNF473   10000 perm   2 sec   (4641 perm/sec)   p_kst 8.926000e-01   p_cons 6.492000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF473.6_2632_10000_0.8926_0.6492_1.png
                gene_name: ZNF473
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 42 percent done.
ZNF493
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.470749e-02	ci left: 5.507057e-01	ci right 5.702590e-01	k: 5605	n:10000
Cons ci ratio: 1.837970e-02	ci left: 8.121240e-01	ci right 8.272893e-01	k: 8198	n:10000
KS ci ratio: 5.174931e-02	ci left: 3.550575e-01	ci right 3.740215e-01	k: 3645	n:10000
ZNF493   10000 perm   2 sec   (4455 perm/sec)   p_kst 3.645000e-01   p_cons 8.198000e-01   p_joint 5.605000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF493.6_2404_10000_0.3645_0.8198_0.5605.png
                gene_name: ZNF493
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 44 percent done.
ZNF502
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.409920e-02	ci left: 8.790966e-01	ci right 8.916780e-01	k: 8855	n:10000
Cons ci ratio: 2.712419e-02	ci left: 6.669285e-01	ci right 6.853688e-01	k: 6762	n:10000
KS ci ratio: 3.200320e-02	ci left: 5.903202e-01	ci right 6.096215e-01	k: 6000	n:10000
ZNF502   10000 perm   2 sec   (4654 perm/sec)   p_kst 6.000000e-01   p_cons 6.762000e-01   p_joint 8.855000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF502.6_1643_10000_0.6_0.6762_0.8855.png
                gene_name: ZNF502
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 45 percent done.
ZNF516
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.601493e-02	ci left: 8.499848e-01	ci right 8.638066e-01	k: 8570	n:10000
Cons ci ratio: 1.606713e-02	ci left: 8.491691e-01	ci right 8.630228e-01	k: 8562	n:10000
KS ci ratio: 2.234215e-02	ci left: 7.462447e-01	ci right 7.632067e-01	k: 7548	n:10000
ZNF516   10000 perm   2 sec   (4300 perm/sec)   p_kst 7.548000e-01   p_cons 8.562000e-01   p_joint 8.570000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF516.6_3513_10000_0.7548_0.8562_0.857.png
                gene_name: ZNF516
               theta_stop: 0.022 
                    nperm: 10000 
                     p_ks: 0.75 
        ci_ks_bounds_left: 0.75 
       ci_ks_bounds_right: 0.76 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.86 
     ci_joint_bounds_left: 0.85 
    ci_joint_bounds_right: 0.86 

Current progress: 47 percent done.
ZNF391
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.821140e-02	ci left: 3.882876e-01	ci right 4.075719e-01	k: 3979	n:10000
Cons ci ratio: 2.640853e-02	ci left: 6.786140e-01	ci right 6.968765e-01	k: 6878	n:10000
KS ci ratio: 6.299974e-02	ci left: 2.702248e-01	ci right 2.879041e-01	k: 2790	n:10000
ZNF391   10000 perm   2 sec   (5885 perm/sec)   p_kst 2.790000e-01   p_cons 6.878000e-01   p_joint 3.979000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF391.5_1081_10000_0.279_0.6878_0.3979.png
                gene_name: ZNF391
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.41 

Current progress: 48 percent done.
ZNF418
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.212491e-02	ci left: 7.498858e-01	ci right 7.667635e-01	k: 7584	n:10000
KS ci ratio: 2.460214e-02	ci left: 7.084626e-01	ci right 7.262107e-01	k: 7174	n:10000
ZNF418   10000 perm   2 sec   (5078 perm/sec)   p_kst 7.174000e-01   p_cons 7.584000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF418.5_2043_10000_0.7174_0.7584_1.png
                gene_name: ZNF418
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 49 percent done.
ZNF425
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.858401e-03	ci left: 9.883990e-01	ci right 9.923073e-01	k: 9905	n:10000
KS ci ratio: 2.492999e-02	ci left: 7.030138e-01	ci right 7.208626e-01	k: 7120	n:10000
ZNF425   10000 perm   2 sec   (5580 perm/sec)   p_kst 7.120000e-01   p_cons 9.905000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF425.5_2275_10000_0.712_0.9905_1.png
                gene_name: ZNF425
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
ZNF430
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.958253e-02	ci left: 1.534534e-01	ci right 1.679449e-01	k: 1606	n:10000
Cons ci ratio: 5.621107e-02	ci left: 3.179062e-01	ci right 3.363946e-01	k: 3271	n:10000
KS ci ratio: 1.239631e-01	ci left: 8.523830e-02	ci right 9.660131e-02	k: 908	n:10000
ZNF430   10000 perm   2 sec   (5551 perm/sec)   p_kst 9.080000e-02   p_cons 3.271000e-01   p_joint 1.606000e-01

Joint ci ratio: 6.073043e-02	ci left: 1.671386e-01	ci right 1.776569e-01	k: 3447	n:20000
Cons ci ratio: 4.016163e-02	ci left: 3.161225e-01	ci right 3.291291e-01	k: 6452	n:20000
KS ci ratio: 8.728774e-02	ci left: 8.758778e-02	ci right 9.563141e-02	k: 1831	n:20000
ZNF430   20000 perm   4 sec   (4895 perm/sec)   p_kst 9.155000e-02   p_cons 3.226000e-01   p_joint 1.723500e-01

Outputting figure to mutsig2_images.part000000000197/ZNF430.5_1733_20000_0.09155_0.3226_0.17235.png
                gene_name: ZNF430
               theta_stop: 0.087 
                    nperm: 20000 
                     p_ks: 0.092 
        ci_ks_bounds_left: 0.088 
       ci_ks_bounds_right: 0.096 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 52 percent done.
ZNF440
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.610159e-02	ci left: 6.836528e-01	ci right 7.018348e-01	k: 6928	n:10000
KS ci ratio: 2.020515e-02	ci left: 7.819844e-01	ci right 7.980463e-01	k: 7901	n:10000
ZNF440   10000 perm   2 sec   (4872 perm/sec)   p_kst 7.901000e-01   p_cons 6.928000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF440.5_1804_10000_0.7901_0.6928_1.png
                gene_name: ZNF440
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
ZNF510
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.152973e-02	ci left: 2.797318e-01	ci right 2.975915e-01	k: 2886	n:10000
Cons ci ratio: 7.684031e-02	ci left: 1.985040e-01	ci right 2.144674e-01	k: 2064	n:10000
KS ci ratio: 7.552859e-02	ci left: 2.041225e-01	ci right 2.202455e-01	k: 2121	n:10000
ZNF510   10000 perm   2 sec   (5490 perm/sec)   p_kst 2.121000e-01   p_cons 2.064000e-01   p_joint 2.886000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF510.5_2072_10000_0.2121_0.2064_0.2886.png
                gene_name: ZNF510
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.22 
                   p_cons: 0.21 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 55 percent done.
ZNF408
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.972347e-02	ci left: 6.253754e-01	ci right 6.443460e-01	k: 6349	n:10000
Cons ci ratio: 2.292136e-02	ci left: 7.365388e-01	ci right 7.537181e-01	k: 7452	n:10000
KS ci ratio: 3.970690e-02	ci left: 4.836541e-01	ci right 5.033497e-01	k: 4935	n:10000
ZNF408   10000 perm   2 sec   (5742 perm/sec)   p_kst 4.935000e-01   p_cons 7.452000e-01   p_joint 6.349000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF408.4_2215_10000_0.4935_0.7452_0.6349.png
                gene_name: ZNF408
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.75 
      ci_cons_bounds_left: 0.74 
     ci_cons_bounds_right: 0.75 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 56 percent done.
ZNF41
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.655002e-02	ci left: 6.762965e-01	ci right 6.945953e-01	k: 6855	n:10000
Cons ci ratio: 1.868369e-02	ci left: 8.071466e-01	ci right 8.224696e-01	k: 8149	n:10000
KS ci ratio: 4.205714e-02	ci left: 4.549859e-01	ci right 4.746346e-01	k: 4648	n:10000
ZNF41   10000 perm   2 sec   (5268 perm/sec)   p_kst 4.648000e-01   p_cons 8.149000e-01   p_joint 6.855000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF41.4_2356_10000_0.4648_0.8149_0.6855.png
                gene_name: ZNF41
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.81 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.82 
                  p_joint: 0.69 
     ci_joint_bounds_left: 0.68 
    ci_joint_bounds_right: 0.69 

Current progress: 58 percent done.
ZNF461
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.513967e-02	ci left: 1.674016e-01	ci right 1.823882e-01	k: 1748	n:10000
Cons ci ratio: 1.494065e-01	ci left: 5.956990e-02	ci right 6.928573e-02	k: 643	n:10000
KS ci ratio: 3.955631e-02	ci left: 4.855531e-01	ci right 5.052495e-01	k: 4954	n:10000
ZNF461   10000 perm   2 sec   (5443 perm/sec)   p_kst 4.954000e-01   p_cons 6.430000e-02   p_joint 1.748000e-01

Joint ci ratio: 6.098706e-02	ci left: 1.659532e-01	ci right 1.764426e-01	k: 3423	n:20000
Cons ci ratio: 1.110964e-01	ci left: 5.533552e-02	ci right 6.189353e-02	k: 1171	n:20000
KS ci ratio: 2.853220e-02	ci left: 4.785509e-01	ci right 4.924533e-01	k: 9710	n:20000
ZNF461   20000 perm   4 sec   (4904 perm/sec)   p_kst 4.855000e-01   p_cons 5.855000e-02   p_joint 1.711500e-01

Joint ci ratio: 6.273175e-02	ci left: 1.115422e-01	ci right 1.187991e-01	k: 3454	n:30000
Cons ci ratio: 9.003241e-02	ci left: 5.675135e-02	ci right 6.213436e-02	k: 1782	n:30000
KS ci ratio: 2.259482e-02	ci left: 4.951256e-01	ci right 5.064743e-01	k: 15024	n:30000
ZNF461   30000 perm   6 sec   (4688 perm/sec)   p_kst 5.008000e-01   p_cons 5.940000e-02   p_joint 1.151333e-01

Outputting figure to mutsig2_images.part000000000197/ZNF461.4_1712_30000_0.5008_0.0594_0.11513.png
                gene_name: ZNF461
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.059 
      ci_cons_bounds_left: 0.057 
     ci_cons_bounds_right: 0.062 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 59 percent done.
ZNF486
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.037220e-01	ci left: 3.205417e-02	ci right 3.941949e-02	k: 356	n:10000
Cons ci ratio: 1.003429e-01	ci left: 1.257171e-01	ci right 1.390978e-01	k: 1323	n:10000
KS ci ratio: 1.696151e-01	ci left: 4.638557e-02	ci right 5.507852e-02	k: 506	n:10000
ZNF486   10000 perm   2 sec   (5824 perm/sec)   p_kst 5.060000e-02   p_cons 1.323000e-01   p_joint 3.560000e-02

Joint ci ratio: 7.733037e-02	ci left: 1.094302e-01	ci right 1.182824e-01	k: 2276	n:20000
Cons ci ratio: 7.069307e-02	ci left: 1.285194e-01	ci right 1.379875e-01	k: 2664	n:20000
KS ci ratio: 1.200010e-01	ci left: 4.760289e-02	ci right 5.372858e-02	k: 1012	n:20000
ZNF486   20000 perm   4 sec   (5108 perm/sec)   p_kst 5.060000e-02   p_cons 1.332000e-01   p_joint 1.138000e-01

Joint ci ratio: 6.954290e-02	ci left: 9.242652e-02	ci right 9.911867e-02	k: 2872	n:30000
Cons ci ratio: 5.806923e-02	ci left: 1.280242e-01	ci right 1.357139e-01	k: 3955	n:30000
KS ci ratio: 9.729176e-02	ci left: 4.883050e-02	ci right 5.385684e-02	k: 1539	n:30000
ZNF486   30000 perm   6 sec   (4845 perm/sec)   p_kst 5.130000e-02   p_cons 1.318333e-01   p_joint 9.573333e-02

Outputting figure to mutsig2_images.part000000000197/ZNF486.4_1408_30000_0.0513_0.13183_0.095733.png
                gene_name: ZNF486
               theta_stop: 0.097 
                    nperm: 30000 
                     p_ks: 0.051 
        ci_ks_bounds_left: 0.049 
       ci_ks_bounds_right: 0.054 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.14 
                  p_joint: 0.096 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.099 

Current progress: 60 percent done.
ZNF498
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.713937e-02	ci left: 1.609163e-01	ci right 1.756775e-01	k: 1682	n:10000
Cons ci ratio: 3.226381e-02	ci left: 5.864060e-01	ci right 6.057380e-01	k: 5961	n:10000
KS ci ratio: 1.335644e-01	ci left: 7.398022e-02	ci right 8.466637e-02	k: 792	n:10000
ZNF498   10000 perm   2 sec   (5604 perm/sec)   p_kst 7.920000e-02   p_cons 5.961000e-01   p_joint 1.682000e-01

Joint ci ratio: 6.398701e-02	ci left: 1.529207e-01	ci right 1.630790e-01	k: 3159	n:20000
Cons ci ratio: 2.147656e-02	ci left: 6.180972e-01	ci right 6.315665e-01	k: 12497	n:20000
KS ci ratio: 9.302034e-02	ci left: 7.774418e-02	ci right 8.537799e-02	k: 1630	n:20000
ZNF498   20000 perm   4 sec   (4920 perm/sec)   p_kst 8.150000e-02   p_cons 6.248500e-01   p_joint 1.579500e-01

Outputting figure to mutsig2_images.part000000000197/ZNF498.4_1655_20000_0.0815_0.62485_0.15795.png
                gene_name: ZNF498
               theta_stop: 0.093 
                    nperm: 20000 
                     p_ks: 0.082 
        ci_ks_bounds_left: 0.078 
       ci_ks_bounds_right: 0.085 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 62 percent done.
ZNF501
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.776400e-03	ci left: 9.888388e-01	ci right 9.926671e-01	k: 9909	n:10000
KS ci ratio: 8.905301e-03	ci left: 9.465858e-01	ci right 9.551491e-01	k: 9510	n:10000
ZNF501   10000 perm   2 sec   (6172 perm/sec)   p_kst 9.510000e-01   p_cons 9.909000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF501.4_820_10000_0.951_0.9909_1.png
                gene_name: ZNF501
               theta_stop: 0.0089 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 63 percent done.
ZNF506
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.983906e-02	ci left: 3.725620e-01	ci right 3.917067e-01	k: 3821	n:10000
Cons ci ratio: 7.023701e-02	ci left: 2.290880e-01	ci right 2.458652e-01	k: 2374	n:10000
KS ci ratio: 3.567568e-02	ci left: 5.370809e-01	ci right 5.566918e-01	k: 5469	n:10000
ZNF506   10000 perm   2 sec   (5835 perm/sec)   p_kst 5.469000e-01   p_cons 2.374000e-01   p_joint 3.821000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF506.4_1351_10000_0.5469_0.2374_0.3821.png
                gene_name: ZNF506
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 64 percent done.
ZNF395
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.184154e-01	ci left: 6.884481e-03	ci right 1.061018e-02	k: 86	n:10000
Cons ci ratio: 2.214301e-02	ci left: 7.495823e-01	ci right 7.664671e-01	k: 7581	n:10000
KS ci ratio: 2.771443e+00	ci left: 2.531778e-06	ci right 5.570370e-04	k: 1	n:10000
ZNF395   10000 perm   2 sec   (5713 perm/sec)   p_kst 1.000000e-04   p_cons 7.581000e-01   p_joint 8.600000e-03

Joint ci ratio: 3.852437e-01	ci left: 4.160297e-03	ci right 6.187672e-03	k: 102	n:20000
Cons ci ratio: 1.603307e-02	ci left: 7.432323e-01	ci right 7.552952e-01	k: 14986	n:20000
KS ci ratio: 2.771651e+00	ci left: 1.265890e-06	ci right 2.785503e-04	k: 1	n:20000
ZNF395   20000 perm   4 sec   (5173 perm/sec)   p_kst 5.000000e-05   p_cons 7.493000e-01   p_joint 5.100000e-03

Joint ci ratio: 4.432679e-01	ci left: 2.026088e-03	ci right 3.206864e-03	k: 77	n:30000
Cons ci ratio: 1.275415e-02	ci left: 7.540852e-01	ci right 7.637980e-01	k: 22769	n:30000
KS ci ratio: 2.771720e+00	ci left: 8.439266e-07	ci right 1.857073e-04	k: 1	n:30000
ZNF395   30000 perm   6 sec   (4963 perm/sec)   p_kst 3.333333e-05   p_cons 7.589667e-01   p_joint 2.566667e-03

Joint ci ratio: 4.174083e-01	ci left: 1.742441e-03	ci right 2.682173e-03	k: 87	n:40000
Cons ci ratio: 1.115609e-02	ci left: 7.510560e-01	ci right 7.595069e-01	k: 30212	n:40000
KS ci ratio: 2.771755e+00	ci left: 6.329450e-07	ci right 1.392831e-04	k: 1	n:40000
ZNF395   40000 perm   8 sec   (4803 perm/sec)   p_kst 2.500000e-05   p_cons 7.553000e-01   p_joint 2.175000e-03

Joint ci ratio: 4.584617e-01	ci left: 1.126877e-03	ci right 1.813103e-03	k: 72	n:50000
Cons ci ratio: 1.000531e-02	ci left: 7.505019e-01	ci right 7.580686e-01	k: 37715	n:50000
KS ci ratio: 2.771775e+00	ci left: 5.063560e-07	ci right 1.114278e-04	k: 1	n:50000
ZNF395   50000 perm   11 sec   (4681 perm/sec)   p_kst 2.000000e-05   p_cons 7.543000e-01   p_joint 1.440000e-03

Joint ci ratio: 5.058125e-01	ci left: 7.486406e-04	ci right 1.268248e-03	k: 59	n:60000
Cons ci ratio: 9.163537e-03	ci left: 7.496124e-01	ci right 7.565298e-01	k: 45185	n:60000
KS ci ratio: 2.771789e+00	ci left: 4.219634e-07	ci right 9.285719e-05	k: 1	n:60000
ZNF395   60000 perm   13 sec   (4573 perm/sec)   p_kst 1.666667e-05   p_cons 7.530833e-01   p_joint 9.833333e-04

Joint ci ratio: 5.434004e-01	ci left: 5.425159e-04	ci right 9.578270e-04	k: 51	n:70000
Cons ci ratio: 8.485364e-03	ci left: 7.498019e-01	ci right 7.562056e-01	k: 52711	n:70000
KS ci ratio: 2.771799e+00	ci left: 3.616829e-07	ci right 7.959231e-05	k: 1	n:70000
ZNF395   70000 perm   16 sec   (4475 perm/sec)   p_kst 1.428571e-05   p_cons 7.530143e-01   p_joint 7.285714e-04

Joint ci ratio: 5.382717e-01	ci left: 4.854880e-04	ci right 8.523023e-04	k: 52	n:80000
Cons ci ratio: 7.933104e-03	ci left: 7.502095e-01	ci right 7.561971e-01	k: 60257	n:80000
KS ci ratio: 2.771807e+00	ci left: 3.164725e-07	ci right 6.964355e-05	k: 1	n:80000
ZNF395   80000 perm   18 sec   (4383 perm/sec)   p_kst 1.250000e-05   p_cons 7.532125e-01   p_joint 6.500000e-04

Joint ci ratio: 5.284082e-01	ci left: 4.507696e-04	ci right 7.827983e-04	k: 54	n:90000
Cons ci ratio: 7.488820e-03	ci left: 7.499122e-01	ci right 7.555604e-01	k: 67747	n:90000
KS ci ratio: 2.771812e+00	ci left: 2.813089e-07	ci right 6.190558e-05	k: 1	n:90000
ZNF395   90000 perm   21 sec   (4289 perm/sec)   p_kst 1.111111e-05   p_cons 7.527444e-01   p_joint 6.000000e-04

Joint ci ratio: 5.190661e-01	ci left: 4.230448e-04	ci right 7.271458e-04	k: 56	n:100000
Cons ci ratio: 7.100215e-03	ci left: 7.502846e-01	ci right 7.556407e-01	k: 75297	n:100000
KS ci ratio: 2.771817e+00	ci left: 2.531780e-07	ci right 5.571516e-05	k: 1	n:100000
ZNF395   100000 perm   24 sec   (4203 perm/sec)   p_kst 1.000000e-05   p_cons 7.529700e-01   p_joint 5.600000e-04

Joint ci ratio: 6.196909e-01	ci left: 2.521282e-04	ci right 4.846438e-04	k: 39	n:110000
Cons ci ratio: 6.769078e-03	ci left: 7.504494e-01	ci right 7.555555e-01	k: 82831	n:110000
KS ci ratio: 2.771821e+00	ci left: 2.301619e-07	ci right 5.065025e-05	k: 1	n:110000
ZNF395   110000 perm   27 sec   (4118 perm/sec)   p_kst 9.090909e-06   p_cons 7.530091e-01   p_joint 3.545455e-04

Joint ci ratio: 7.039589e-01	ci left: 1.686801e-04	ci right 3.568715e-04	k: 30	n:120000
Cons ci ratio: 6.708153e-03	ci left: 7.374749e-01	ci right 7.424469e-01	k: 88796	n:120000
KS ci ratio: 2.771824e+00	ci left: 2.109817e-07	ci right 4.642948e-05	k: 1	n:120000
ZNF395   120000 perm   30 sec   (4036 perm/sec)   p_kst 8.333333e-06   p_cons 7.399667e-01   p_joint 2.500000e-04

Joint ci ratio: 6.625092e-01	ci left: 1.811296e-04	ci right 3.654548e-04	k: 34	n:130000
Cons ci ratio: 6.444943e-03	ci left: 7.375756e-01	ci right 7.423522e-01	k: 96196	n:130000
KS ci ratio: 2.771827e+00	ci left: 1.947524e-07	ci right 4.285804e-05	k: 1	n:130000
ZNF395   130000 perm   33 sec   (3967 perm/sec)   p_kst 7.692308e-06   p_cons 7.399692e-01   p_joint 2.615385e-04

Joint ci ratio: 7.278477e-01	ci left: 1.329025e-04	ci right 2.890428e-04	k: 28	n:140000
Cons ci ratio: 6.210122e-03	ci left: 7.376866e-01	ci right 7.422891e-01	k: 103599	n:140000
KS ci ratio: 2.771829e+00	ci left: 1.808415e-07	ci right 3.979680e-05	k: 1	n:140000
ZNF395   140000 perm   36 sec   (3898 perm/sec)   p_kst 7.142857e-06   p_cons 7.399929e-01   p_joint 2.000000e-04

Joint ci ratio: 6.276187e-01	ci left: 1.792798e-04	ci right 3.477034e-04	k: 38	n:150000
Cons ci ratio: 5.795693e-03	ci left: 7.508829e-01	ci right 7.552540e-01	k: 112961	n:150000
KS ci ratio: 2.771831e+00	ci left: 1.687854e-07	ci right 3.714372e-05	k: 1	n:150000
ZNF395   150000 perm   39 sec   (3837 perm/sec)   p_kst 6.666667e-06   p_cons 7.530733e-01   p_joint 2.533333e-04

Joint ci ratio: 6.047878e-01	ci left: 1.838955e-04	ci right 3.476162e-04	k: 41	n:160000
Cons ci ratio: 5.614555e-03	ci left: 7.507600e-01	ci right 7.549933e-01	k: 120461	n:160000
KS ci ratio: 2.771833e+00	ci left: 1.582363e-07	ci right 3.482227e-05	k: 1	n:160000
ZNF395   160000 perm   42 sec   (3778 perm/sec)   p_kst 6.250000e-06   p_cons 7.528812e-01   p_joint 2.562500e-04

Joint ci ratio: 5.842800e-01	ci left: 1.880677e-04	ci right 3.474431e-04	k: 44	n:170000
Cons ci ratio: 5.449141e-03	ci left: 7.506713e-01	ci right 7.547789e-01	k: 127964	n:170000
KS ci ratio: 2.771834e+00	ci left: 1.489283e-07	ci right 3.277393e-05	k: 1	n:170000
ZNF395   170000 perm   46 sec   (3687 perm/sec)   p_kst 5.882353e-06   p_cons 7.527294e-01   p_joint 2.588235e-04

Joint ci ratio: 5.542932e-01	ci left: 2.013981e-04	ci right 3.598764e-04	k: 49	n:180000
Cons ci ratio: 5.297533e-03	ci left: 7.505942e-01	ci right 7.545866e-01	k: 135467	n:180000
KS ci ratio: 2.771835e+00	ci left: 1.406545e-07	ci right 3.095318e-05	k: 1	n:180000
ZNF395   180000 perm   50 sec   (3631 perm/sec)   p_kst 5.555556e-06   p_cons 7.525944e-01   p_joint 2.722222e-04

Joint ci ratio: 5.435304e-01	ci left: 1.998634e-04	ci right 3.529092e-04	k: 51	n:190000
Cons ci ratio: 5.156601e-03	ci left: 7.506216e-01	ci right 7.545075e-01	k: 142988	n:190000
KS ci ratio: 2.771837e+00	ci left: 1.332516e-07	ci right 2.932409e-05	k: 1	n:190000
ZNF395   190000 perm   53 sec   (3577 perm/sec)   p_kst 5.263158e-06   p_cons 7.525684e-01   p_joint 2.684211e-04

Joint ci ratio: 5.488384e-01	ci left: 1.855603e-04	ci right 3.295807e-04	k: 50	n:200000
Cons ci ratio: 5.029250e-03	ci left: 7.504321e-01	ci right 7.542206e-01	k: 150466	n:200000
KS ci ratio: 2.771838e+00	ci left: 1.265890e-07	ci right 2.785790e-05	k: 1	n:200000
ZNF395   200000 perm   57 sec   (3527 perm/sec)   p_kst 5.000000e-06   p_cons 7.523300e-01   p_joint 2.500000e-04

Joint ci ratio: 5.285022e-01	ci left: 1.931793e-04	ci right 3.355025e-04	k: 54	n:210000
Cons ci ratio: 4.908755e-03	ci left: 7.504240e-01	ci right 7.541214e-01	k: 157978	n:210000
KS ci ratio: 2.771839e+00	ci left: 1.205610e-07	ci right 2.653135e-05	k: 1	n:210000
ZNF395   210000 perm   60 sec   (3477 perm/sec)   p_kst 4.761905e-06   p_cons 7.522762e-01   p_joint 2.571429e-04

Joint ci ratio: 5.285054e-01	ci left: 1.843982e-04	ci right 3.202530e-04	k: 54	n:220000
Cons ci ratio: 4.791904e-03	ci left: 7.507776e-01	ci right 7.543884e-01	k: 165569	n:220000
KS ci ratio: 2.771840e+00	ci left: 1.150809e-07	ci right 2.532539e-05	k: 1	n:220000
ZNF395   220000 perm   64 sec   (3429 perm/sec)   p_kst 4.545455e-06   p_cons 7.525864e-01   p_joint 2.454545e-04

Joint ci ratio: 5.909044e-01	ci left: 1.353046e-04	ci right 2.518210e-04	k: 43	n:230000
Cons ci ratio: 4.819971e-03	ci left: 7.401936e-01	ci right 7.437742e-01	k: 170657	n:230000
KS ci ratio: 2.771841e+00	ci left: 1.100774e-07	ci right 2.422430e-05	k: 1	n:230000
ZNF395   230000 perm   68 sec   (3377 perm/sec)   p_kst 4.347826e-06   p_cons 7.419870e-01   p_joint 1.869565e-04

Joint ci ratio: 5.843031e-01	ci left: 1.332133e-04	ci right 2.461087e-04	k: 44	n:240000
Cons ci ratio: 4.721355e-03	ci left: 7.399982e-01	ci right 7.435043e-01	k: 178021	n:240000
KS ci ratio: 2.771841e+00	ci left: 1.054909e-07	ci right 2.321496e-05	k: 1	n:240000
ZNF395   240000 perm   72 sec   (3330 perm/sec)   p_kst 4.166667e-06   p_cons 7.417542e-01   p_joint 1.833333e-04

Joint ci ratio: 6.121497e-01	ci left: 1.143087e-04	ci right 2.178683e-04	k: 40	n:250000
Cons ci ratio: 4.624107e-03	ci left: 7.401879e-01	ci right 7.436225e-01	k: 185477	n:250000
KS ci ratio: 2.771842e+00	ci left: 1.012712e-07	ci right 2.228637e-05	k: 1	n:250000
ZNF395   250000 perm   76 sec   (3283 perm/sec)   p_kst 4.000000e-06   p_cons 7.419080e-01   p_joint 1.600000e-04

Joint ci ratio: 5.977438e-01	ci left: 1.164251e-04	ci right 2.183469e-04	k: 42	n:260000
Cons ci ratio: 4.536363e-03	ci left: 7.400476e-01	ci right 7.434162e-01	k: 192851	n:260000
KS ci ratio: 2.771843e+00	ci left: 9.737618e-08	ci right 2.142921e-05	k: 1	n:260000
ZNF395   260000 perm   80 sec   (3238 perm/sec)   p_kst 3.846154e-06   p_cons 7.417346e-01   p_joint 1.615385e-04

Joint ci ratio: 5.977457e-01	ci left: 1.121130e-04	ci right 2.102602e-04	k: 42	n:270000
Cons ci ratio: 4.451192e-03	ci left: 7.401114e-01	ci right 7.434168e-01	k: 200277	n:270000
KS ci ratio: 2.771843e+00	ci left: 9.376965e-08	ci right 2.063554e-05	k: 1	n:270000
ZNF395   270000 perm   85 sec   (3193 perm/sec)   p_kst 3.703704e-06   p_cons 7.417667e-01   p_joint 1.555556e-04

Joint ci ratio: 6.276575e-01	ci left: 9.604124e-05	ci right 1.862738e-04	k: 38	n:280000
Cons ci ratio: 4.373985e-03	ci left: 7.398777e-01	ci right 7.431245e-01	k: 207621	n:280000
KS ci ratio: 2.771844e+00	ci left: 9.042074e-08	ci right 1.989856e-05	k: 1	n:280000
ZNF395   280000 perm   89 sec   (3150 perm/sec)   p_kst 3.571429e-06   p_cons 7.415036e-01   p_joint 1.357143e-04

Joint ci ratio: 6.276591e-01	ci left: 9.272942e-05	ci right 1.798507e-04	k: 38	n:290000
Cons ci ratio: 4.297139e-03	ci left: 7.399750e-01	ci right 7.431650e-01	k: 215056	n:290000
KS ci ratio: 2.771844e+00	ci left: 8.730278e-08	ci right 1.921241e-05	k: 1	n:290000
ZNF395   290000 perm   93 sec   (3108 perm/sec)   p_kst 3.448276e-06   p_cons 7.415724e-01   p_joint 1.310345e-04

Joint ci ratio: 6.197641e-01	ci left: 9.244429e-05	ci right 1.777100e-04	k: 39	n:300000
Cons ci ratio: 4.224168e-03	ci left: 7.400696e-01	ci right 7.432057e-01	k: 222492	n:300000
KS ci ratio: 2.771845e+00	ci left: 8.439269e-08	ci right 1.857200e-05	k: 1	n:300000
ZNF395   300000 perm   98 sec   (3068 perm/sec)   p_kst 3.333333e-06   p_cons 7.416400e-01   p_joint 1.300000e-04

Joint ci ratio: 6.197654e-01	ci left: 8.946217e-05	ci right 1.719776e-04	k: 39	n:310000
Cons ci ratio: 4.153358e-03	ci left: 7.402911e-01	ci right 7.433754e-01	k: 229969	n:310000
KS ci ratio: 2.771845e+00	ci left: 8.167035e-08	ci right 1.797291e-05	k: 1	n:310000
ZNF395   310000 perm   102 sec   (3027 perm/sec)   p_kst 3.225806e-06   p_cons 7.418355e-01   p_joint 1.258065e-04

Joint ci ratio: 6.197667e-01	ci left: 8.666643e-05	ci right 1.666034e-04	k: 39	n:320000
Cons ci ratio: 4.088626e-03	ci left: 7.402517e-01	ci right 7.432876e-01	k: 237367	n:320000
KS ci ratio: 2.771846e+00	ci left: 7.911815e-08	ci right 1.741126e-05	k: 1	n:320000
ZNF395   320000 perm   107 sec   (2989 perm/sec)   p_kst 3.125000e-06   p_cons 7.417719e-01   p_joint 1.218750e-04

Joint ci ratio: 6.048297e-01	ci left: 8.915994e-05	ci right 1.685451e-04	k: 41	n:330000
Cons ci ratio: 4.023580e-03	ci left: 7.405248e-01	ci right 7.435134e-01	k: 244867	n:330000
KS ci ratio: 2.771846e+00	ci left: 7.672063e-08	ci right 1.688365e-05	k: 1	n:330000
ZNF395   330000 perm   112 sec   (2951 perm/sec)   p_kst 3.030303e-06   p_cons 7.420212e-01   p_joint 1.242424e-04

Joint ci ratio: 5.977557e-01	ci left: 8.903054e-05	ci right 1.669723e-04	k: 42	n:340000
Cons ci ratio: 3.964218e-03	ci left: 7.405228e-01	ci right 7.434672e-01	k: 252279	n:340000
KS ci ratio: 2.771846e+00	ci left: 7.446414e-08	ci right 1.638708e-05	k: 1	n:340000
ZNF395   340000 perm   117 sec   (2915 perm/sec)   p_kst 2.941176e-06   p_cons 7.419971e-01   p_joint 1.235294e-04

Joint ci ratio: 5.909242e-01	ci left: 8.891371e-05	ci right 1.654842e-04	k: 43	n:350000
Cons ci ratio: 3.907846e-03	ci left: 7.404783e-01	ci right 7.433805e-01	k: 259676	n:350000
KS ci ratio: 2.771847e+00	ci left: 7.233659e-08	ci right 1.591888e-05	k: 1	n:350000
ZNF395   350000 perm   122 sec   (2878 perm/sec)   p_kst 2.857143e-06   p_cons 7.419314e-01   p_joint 1.228571e-04

Joint ci ratio: 5.909253e-01	ci left: 8.644384e-05	ci right 1.608875e-04	k: 43	n:360000
Cons ci ratio: 3.851520e-03	ci left: 7.406648e-01	ci right 7.435257e-01	k: 267155	n:360000
KS ci ratio: 2.771847e+00	ci left: 7.032724e-08	ci right 1.547669e-05	k: 1	n:360000
ZNF395   360000 perm   127 sec   (2842 perm/sec)   p_kst 2.777778e-06   p_cons 7.420972e-01   p_joint 1.194444e-04

Joint ci ratio: 5.779358e-01	ci left: 8.871299e-05	ci right 1.627360e-04	k: 45	n:370000
Cons ci ratio: 3.800644e-03	ci left: 7.405301e-01	ci right 7.433526e-01	k: 274519	n:370000
KS ci ratio: 2.771847e+00	ci left: 6.842651e-08	ci right 1.505840e-05	k: 1	n:370000
ZNF395   370000 perm   132 sec   (2807 perm/sec)   p_kst 2.702703e-06   p_cons 7.419432e-01   p_joint 1.216216e-04

Joint ci ratio: 5.779367e-01	ci left: 8.637840e-05	ci right 1.584535e-04	k: 45	n:380000
Cons ci ratio: 3.749978e-03	ci left: 7.405820e-01	ci right 7.433670e-01	k: 281951	n:380000
KS ci ratio: 2.771848e+00	ci left: 6.662581e-08	ci right 1.466213e-05	k: 1	n:380000
ZNF395   380000 perm   137 sec   (2773 perm/sec)   p_kst 2.631579e-06   p_cons 7.419763e-01   p_joint 1.184211e-04

Joint ci ratio: 5.779376e-01	ci left: 8.416354e-05	ci right 1.543907e-04	k: 45	n:390000
Cons ci ratio: 3.701138e-03	ci left: 7.406469e-01	ci right 7.433957e-01	k: 289389	n:390000
KS ci ratio: 2.771848e+00	ci left: 6.491745e-08	ci right 1.428618e-05	k: 1	n:390000
ZNF395   390000 perm   142 sec   (2742 perm/sec)   p_kst 2.564103e-06   p_cons 7.420231e-01   p_joint 1.153846e-04

Joint ci ratio: 5.717565e-01	ci left: 8.419565e-05	ci right 1.533909e-04	k: 46	n:400000
Cons ci ratio: 3.655039e-03	ci left: 7.406161e-01	ci right 7.433304e-01	k: 296790	n:400000
KS ci ratio: 2.771848e+00	ci left: 6.329452e-08	ci right 1.392903e-05	k: 1	n:400000
ZNF395   400000 perm   148 sec   (2709 perm/sec)   p_kst 2.500000e-06   p_cons 7.419750e-01   p_joint 1.150000e-04

Joint ci ratio: 5.779393e-01	ci left: 8.005794e-05	ci right 1.468596e-04	k: 45	n:410000
Cons ci ratio: 3.610760e-03	ci left: 7.405723e-01	ci right 7.432536e-01	k: 304185	n:410000
KS ci ratio: 2.263202e+00	ci left: 5.907549e-07	ci right 1.762108e-05	k: 2	n:410000
ZNF395   410000 perm   153 sec   (2678 perm/sec)   p_kst 4.878049e-06   p_cons 7.419146e-01   p_joint 1.097561e-04

Joint ci ratio: 5.657703e-01	ci left: 8.222453e-05	ci right 1.488069e-04	k: 47	n:420000
Cons ci ratio: 3.567342e-03	ci left: 7.406071e-01	ci right 7.432562e-01	k: 311612	n:420000
KS ci ratio: 2.263202e+00	ci left: 5.766893e-07	ci right 1.720153e-05	k: 2	n:420000
ZNF395   420000 perm   159 sec   (2648 perm/sec)   p_kst 4.761905e-06   p_cons 7.419333e-01   p_joint 1.119048e-04

Joint ci ratio: 7.040266e-01	ci left: 4.707228e-05	ci right 9.959588e-05	k: 30	n:430000
Cons ci ratio: 3.524661e-03	ci left: 7.407267e-01	ci right 7.433444e-01	k: 319076	n:430000
KS ci ratio: 2.263203e+00	ci left: 5.632779e-07	ci right 1.680150e-05	k: 2	n:430000
ZNF395   430000 perm   164 sec   (2618 perm/sec)   p_kst 4.651163e-06   p_cons 7.420372e-01   p_joint 6.976744e-05

Joint ci ratio: 8.765177e-01	ci left: 2.599847e-05	ci right 6.743294e-05	k: 19	n:440000
Cons ci ratio: 3.485419e-03	ci left: 7.406271e-01	ci right 7.432152e-01	k: 326446	n:440000
KS ci ratio: 2.263203e+00	ci left: 5.504761e-07	ci right 1.641965e-05	k: 2	n:440000
ZNF395   440000 perm   170 sec   (2588 perm/sec)   p_kst 4.545455e-06   p_cons 7.419227e-01   p_joint 4.318182e-05

Joint ci ratio: 9.239334e-01	ci left: 2.200710e-05	ci right 6.048520e-05	k: 17	n:450000
Cons ci ratio: 3.445560e-03	ci left: 7.407435e-01	ci right 7.433023e-01	k: 333911	n:450000
KS ci ratio: 2.771849e+00	ci left: 5.626179e-08	ci right 1.238137e-05	k: 1	n:450000
ZNF395   450000 perm   176 sec   (2561 perm/sec)   p_kst 2.222222e-06   p_cons 7.420244e-01   p_joint 3.777778e-05

Joint ci ratio: 1.047647e+00	ci left: 1.504781e-05	ci right 4.832646e-05	k: 13	n:460000
Cons ci ratio: 3.407036e-03	ci left: 7.408549e-01	ci right 7.433855e-01	k: 341376	n:460000
KS ci ratio: 2.771850e+00	ci left: 5.503871e-08	ci right 1.211221e-05	k: 1	n:460000
ZNF395   460000 perm   182 sec   (2534 perm/sec)   p_kst 2.173913e-06   p_cons 7.421217e-01   p_joint 2.826087e-05

Joint ci ratio: 1.047647e+00	ci left: 1.472764e-05	ci right 4.729825e-05	k: 13	n:470000
Cons ci ratio: 3.371743e-03	ci left: 7.407381e-01	ci right 7.432419e-01	k: 348736	n:470000
KS ci ratio: 2.771850e+00	ci left: 5.386768e-08	ci right 1.185450e-05	k: 1	n:470000
ZNF395   470000 perm   187 sec   (2507 perm/sec)   p_kst 2.127660e-06   p_cons 7.419915e-01   p_joint 2.765957e-05

Joint ci ratio: 1.047648e+00	ci left: 1.442081e-05	ci right 4.631288e-05	k: 13	n:480000
Cons ci ratio: 3.335509e-03	ci left: 7.408578e-01	ci right 7.433351e-01	k: 356207	n:480000
KS ci ratio: 2.771850e+00	ci left: 5.274543e-08	ci right 1.160754e-05	k: 1	n:480000
ZNF395   480000 perm   194 sec   (2479 perm/sec)   p_kst 2.083333e-06   p_cons 7.420979e-01   p_joint 2.708333e-05

Joint ci ratio: 1.047648e+00	ci left: 1.412651e-05	ci right 4.536773e-05	k: 13	n:490000
Cons ci ratio: 3.301737e-03	ci left: 7.408195e-01	ci right 7.432715e-01	k: 363603	n:490000
KS ci ratio: 2.771850e+00	ci left: 5.166899e-08	ci right 1.137065e-05	k: 1	n:490000
ZNF395   490000 perm   200 sec   (2453 perm/sec)   p_kst 2.040816e-06   p_cons 7.420469e-01   p_joint 2.653061e-05

Joint ci ratio: 1.047648e+00	ci left: 1.384398e-05	ci right 4.446038e-05	k: 13	n:500000
Cons ci ratio: 3.269141e-03	ci left: 7.407628e-01	ci right 7.431904e-01	k: 370989	n:500000
KS ci ratio: 2.771850e+00	ci left: 5.063561e-08	ci right 1.114324e-05	k: 1	n:500000
ZNF395   500000 perm   206 sec   (2428 perm/sec)   p_kst 2.000000e-06   p_cons 7.419780e-01   p_joint 2.600000e-05

Joint ci ratio: 1.047649e+00	ci left: 1.357252e-05	ci right 4.358862e-05	k: 13	n:510000
Cons ci ratio: 3.235155e-03	ci left: 7.409854e-01	ci right 7.433884e-01	k: 378516	n:510000
KS ci ratio: 2.771850e+00	ci left: 4.964276e-08	ci right 1.092474e-05	k: 1	n:510000
ZNF395   510000 perm   212 sec   (2404 perm/sec)   p_kst 1.960784e-06   p_cons 7.421882e-01   p_joint 2.549020e-05

Joint ci ratio: 1.047649e+00	ci left: 1.331151e-05	ci right 4.275038e-05	k: 13	n:520000
Cons ci ratio: 3.202575e-03	ci left: 7.411552e-01	ci right 7.435345e-01	k: 386020	n:520000
KS ci ratio: 2.771851e+00	ci left: 4.868809e-08	ci right 1.071465e-05	k: 1	n:520000
ZNF395   520000 perm   219 sec   (2379 perm/sec)   p_kst 1.923077e-06   p_cons 7.423462e-01   p_joint 2.500000e-05

Joint ci ratio: 1.047649e+00	ci left: 1.306035e-05	ci right 4.194378e-05	k: 13	n:530000
Cons ci ratio: 3.171834e-03	ci left: 7.412128e-01	ci right 7.435694e-01	k: 393468	n:530000
KS ci ratio: 2.771851e+00	ci left: 4.776945e-08	ci right 1.051249e-05	k: 1	n:530000
ZNF395   530000 perm   225 sec   (2355 perm/sec)   p_kst 1.886792e-06   p_cons 7.423925e-01   p_joint 2.452830e-05

Joint ci ratio: 1.012125e+00	ci left: 1.417402e-05	ci right 4.349892e-05	k: 14	n:540000
Cons ci ratio: 3.142966e-03	ci left: 7.411461e-01	ci right 7.434810e-01	k: 400850	n:540000
KS ci ratio: 2.771851e+00	ci left: 4.688483e-08	ci right 1.031781e-05	k: 1	n:540000
ZNF395   540000 perm   232 sec   (2332 perm/sec)   p_kst 1.851852e-06   p_cons 7.423148e-01   p_joint 2.592593e-05

Joint ci ratio: 9.507241e-01	ci left: 1.662806e-05	ci right 4.724139e-05	k: 16	n:550000
Cons ci ratio: 3.114768e-03	ci left: 7.410946e-01	ci right 7.434083e-01	k: 408239	n:550000
KS ci ratio: 2.771851e+00	ci left: 4.603238e-08	ci right 1.013022e-05	k: 1	n:550000
ZNF395   550000 perm   238 sec   (2310 perm/sec)   p_kst 1.818182e-06   p_cons 7.422527e-01   p_joint 2.909091e-05

Joint ci ratio: 9.239372e-01	ci left: 1.768425e-05	ci right 4.860428e-05	k: 17	n:560000
Cons ci ratio: 3.087027e-03	ci left: 7.410808e-01	ci right 7.433738e-01	k: 415648	n:560000
KS ci ratio: 2.771851e+00	ci left: 4.521037e-08	ci right 9.949323e-06	k: 1	n:560000
ZNF395   560000 perm   245 sec   (2287 perm/sec)   p_kst 1.785714e-06   p_cons 7.422286e-01   p_joint 3.035714e-05

Joint ci ratio: 8.992939e-01	ci left: 1.871579e-05	ci right 4.990789e-05	k: 18	n:570000
Cons ci ratio: 3.059173e-03	ci left: 7.411730e-01	ci right 7.434456e-01	k: 423117	n:570000
KS ci ratio: 2.771851e+00	ci left: 4.441721e-08	ci right 9.774774e-06	k: 1	n:570000
ZNF395   570000 perm   252 sec   (2266 perm/sec)   p_kst 1.754386e-06   p_cons 7.423105e-01   p_joint 3.157895e-05

Joint ci ratio: 8.553979e-01	ci left: 2.106309e-05	ci right 5.325532e-05	k: 20	n:580000
Cons ci ratio: 3.032510e-03	ci left: 7.412051e-01	ci right 7.434580e-01	k: 430553	n:580000
KS ci ratio: 2.771851e+00	ci left: 4.365139e-08	ci right 9.606244e-06	k: 1	n:580000
ZNF395   580000 perm   258 sec   (2244 perm/sec)   p_kst 1.724138e-06   p_cons 7.423328e-01   p_joint 3.448276e-05

Joint ci ratio: 8.553982e-01	ci left: 2.070608e-05	ci right 5.235270e-05	k: 20	n:590000
Cons ci ratio: 3.007264e-03	ci left: 7.411429e-01	ci right 7.433767e-01	k: 437934	n:590000
KS ci ratio: 2.771852e+00	ci left: 4.291154e-08	ci right 9.443427e-06	k: 1	n:590000
ZNF395   590000 perm   266 sec   (2221 perm/sec)   p_kst 1.694915e-06   p_cons 7.422610e-01   p_joint 3.389831e-05

Joint ci ratio: 8.553984e-01	ci left: 2.036098e-05	ci right 5.148016e-05	k: 20	n:600000
Cons ci ratio: 2.982483e-03	ci left: 7.411029e-01	ci right 7.433181e-01	k: 445327	n:600000
KS ci ratio: 2.771852e+00	ci left: 4.219635e-08	ci right 9.286037e-06	k: 1	n:600000
ZNF395   600000 perm   273 sec   (2200 perm/sec)   p_kst 1.666667e-06   p_cons 7.422117e-01   p_joint 3.333333e-05

Joint ci ratio: 8.553987e-01	ci left: 2.002719e-05	ci right 5.063623e-05	k: 20	n:610000
Cons ci ratio: 2.957646e-03	ci left: 7.411496e-01	ci right 7.433465e-01	k: 452772	n:610000
KS ci ratio: 2.771852e+00	ci left: 4.150460e-08	ci right 9.133807e-06	k: 1	n:610000
ZNF395   610000 perm   280 sec   (2180 perm/sec)   p_kst 1.639344e-06   p_cons 7.422492e-01   p_joint 3.278689e-05

Joint ci ratio: 8.357313e-01	ci left: 2.096678e-05	ci right 5.177491e-05	k: 21	n:620000
Cons ci ratio: 2.933789e-03	ci left: 7.411464e-01	ci right 7.433255e-01	k: 460187	n:620000
KS ci ratio: 2.771852e+00	ci left: 4.083517e-08	ci right 8.986488e-06	k: 1	n:620000
ZNF395   620000 perm   287 sec   (2159 perm/sec)   p_kst 1.612903e-06   p_cons 7.422371e-01   p_joint 3.387097e-05

Joint ci ratio: 8.357316e-01	ci left: 2.063397e-05	ci right 5.095309e-05	k: 21	n:630000
Cons ci ratio: 2.911829e-03	ci left: 7.409685e-01	ci right 7.431308e-01	k: 467492	n:630000
KS ci ratio: 2.771852e+00	ci left: 4.018700e-08	ci right 8.843846e-06	k: 1	n:630000
ZNF395   630000 perm   294 sec   (2140 perm/sec)   p_kst 1.587302e-06   p_cons 7.420508e-01   p_joint 3.333333e-05

Joint ci ratio: 8.357318e-01	ci left: 2.031157e-05	ci right 5.015696e-05	k: 21	n:640000
Cons ci ratio: 2.889032e-03	ci left: 7.409716e-01	ci right 7.431169e-01	k: 474909	n:640000
KS ci ratio: 2.771852e+00	ci left: 3.955907e-08	ci right 8.705662e-06	k: 1	n:640000
ZNF395   640000 perm   302 sec   (2121 perm/sec)   p_kst 1.562500e-06   p_cons 7.420453e-01   p_joint 3.281250e-05

Joint ci ratio: 8.553997e-01	ci left: 1.879474e-05	ci right 4.752018e-05	k: 20	n:650000
Cons ci ratio: 2.866440e-03	ci left: 7.410177e-01	ci right 7.431463e-01	k: 482354	n:650000
KS ci ratio: 2.771852e+00	ci left: 3.895047e-08	ci right 8.571729e-06	k: 1	n:650000
ZNF395   650000 perm   309 sec   (2103 perm/sec)   p_kst 1.538462e-06   p_cons 7.420831e-01   p_joint 3.076923e-05

Joint ci ratio: 8.553999e-01	ci left: 1.850997e-05	ci right 4.680019e-05	k: 20	n:660000
Cons ci ratio: 2.844921e-03	ci left: 7.409881e-01	ci right 7.431007e-01	k: 489750	n:660000
KS ci ratio: 2.771852e+00	ci left: 3.836031e-08	ci right 8.441855e-06	k: 1	n:660000
ZNF395   660000 perm   317 sec   (2085 perm/sec)   p_kst 1.515152e-06   p_cons 7.420455e-01   p_joint 3.030303e-05

Joint ci ratio: 8.357325e-01	ci left: 1.940209e-05	ci right 4.791114e-05	k: 21	n:670000
Cons ci ratio: 2.824453e-03	ci left: 7.408818e-01	ci right 7.429788e-01	k: 497094	n:670000
KS ci ratio: 2.771852e+00	ci left: 3.778777e-08	ci right 8.315857e-06	k: 1	n:670000
ZNF395   670000 perm   324 sec   (2067 perm/sec)   p_kst 1.492537e-06   p_cons 7.419313e-01   p_joint 3.134328e-05

Joint ci ratio: 8.357327e-01	ci left: 1.911676e-05	ci right 4.720657e-05	k: 21	n:680000
Cons ci ratio: 2.803697e-03	ci left: 7.408773e-01	ci right 7.429589e-01	k: 504505	n:680000
KS ci ratio: 2.771852e+00	ci left: 3.723207e-08	ci right 8.193566e-06	k: 1	n:680000
ZNF395   680000 perm   332 sec   (2050 perm/sec)   p_kst 1.470588e-06   p_cons 7.419191e-01   p_joint 3.088235e-05

Joint ci ratio: 8.765253e-01	ci left: 1.657869e-05	ci right 4.300090e-05	k: 19	n:690000
Cons ci ratio: 2.783498e-03	ci left: 7.408585e-01	ci right 7.429250e-01	k: 511906	n:690000
KS ci ratio: 2.771853e+00	ci left: 3.669247e-08	ci right 8.074819e-06	k: 1	n:690000
ZNF395   690000 perm   339 sec   (2032 perm/sec)   p_kst 1.449275e-06   p_cons 7.418928e-01   p_joint 2.753623e-05

Joint ci ratio: 8.765255e-01	ci left: 1.634185e-05	ci right 4.238661e-05	k: 19	n:700000
Cons ci ratio: 2.762935e-03	ci left: 7.409504e-01	ci right 7.430019e-01	k: 519384	n:700000
KS ci ratio: 2.771853e+00	ci left: 3.616830e-08	ci right 7.959465e-06	k: 1	n:700000
ZNF395   700000 perm   347 sec   (2015 perm/sec)   p_kst 1.428571e-06   p_cons 7.419771e-01   p_joint 2.714286e-05

Joint ci ratio: 8.554009e-01	ci left: 1.720645e-05	ci right 4.350442e-05	k: 20	n:710000
Cons ci ratio: 2.743185e-03	ci left: 7.409890e-01	ci right 7.430259e-01	k: 526826	n:710000
KS ci ratio: 2.771853e+00	ci left: 3.565888e-08	ci right 7.847360e-06	k: 1	n:710000
ZNF395   710000 perm   355 sec   (1998 perm/sec)   p_kst 1.408451e-06   p_cons 7.420085e-01   p_joint 2.816901e-05

Joint ci ratio: 8.554011e-01	ci left: 1.696747e-05	ci right 4.290020e-05	k: 20	n:720000
Cons ci ratio: 2.723664e-03	ci left: 7.410531e-01	ci right 7.430755e-01	k: 534287	n:720000
KS ci ratio: 2.771853e+00	ci left: 3.516362e-08	ci right 7.738369e-06	k: 1	n:720000
ZNF395   720000 perm   363 sec   (1982 perm/sec)   p_kst 1.388889e-06   p_cons 7.420653e-01   p_joint 2.777778e-05

Joint ci ratio: 9.799886e-01	ci left: 1.150057e-05	ci right 3.389048e-05	k: 15	n:730000
Cons ci ratio: 2.704825e-03	ci left: 7.410770e-01	ci right 7.430855e-01	k: 541720	n:730000
KS ci ratio: 2.771853e+00	ci left: 3.468193e-08	ci right 7.632364e-06	k: 1	n:730000
ZNF395   730000 perm   371 sec   (1966 perm/sec)   p_kst 1.369863e-06   p_cons 7.420822e-01   p_joint 2.054795e-05

Joint ci ratio: 9.799887e-01	ci left: 1.134516e-05	ci right 3.343251e-05	k: 15	n:740000
Cons ci ratio: 2.685736e-03	ci left: 7.411909e-01	ci right 7.431856e-01	k: 549220	n:740000
KS ci ratio: 2.771853e+00	ci left: 3.421325e-08	ci right 7.529225e-06	k: 1	n:740000
ZNF395   740000 perm   379 sec   (1950 perm/sec)   p_kst 1.351351e-06   p_cons 7.421892e-01   p_joint 2.027027e-05

Joint ci ratio: 9.799889e-01	ci left: 1.119389e-05	ci right 3.298674e-05	k: 15	n:750000
Cons ci ratio: 2.668235e-03	ci left: 7.411310e-01	ci right 7.431125e-01	k: 556592	n:750000
KS ci ratio: 2.771853e+00	ci left: 3.375708e-08	ci right 7.428835e-06	k: 1	n:750000
ZNF395   750000 perm   388 sec   (1935 perm/sec)   p_kst 1.333333e-06   p_cons 7.421227e-01   p_joint 2.000000e-05

Joint ci ratio: 1.131597e+00	ci left: 7.225232e-06	ci right 2.589727e-05	k: 11	n:760000
Cons ci ratio: 2.650606e-03	ci left: 7.411399e-01	ci right 7.431083e-01	k: 564015	n:760000
KS ci ratio: 2.771853e+00	ci left: 3.331290e-08	ci right 7.331088e-06	k: 1	n:760000
ZNF395   760000 perm   396 sec   (1919 perm/sec)   p_kst 1.315789e-06   p_cons 7.421250e-01   p_joint 1.447368e-05

Joint ci ratio: 1.131597e+00	ci left: 7.131398e-06	ci right 2.556094e-05	k: 11	n:770000
Cons ci ratio: 2.633752e-03	ci left: 7.410862e-01	ci right 7.430419e-01	k: 571390	n:770000
KS ci ratio: 2.771853e+00	ci left: 3.288027e-08	ci right 7.235879e-06	k: 1	n:770000
ZNF395   770000 perm   404 sec   (1904 perm/sec)   p_kst 1.298701e-06   p_cons 7.420649e-01   p_joint 1.428571e-05

Joint ci ratio: 1.047654e+00	ci left: 8.874327e-06	ci right 2.850034e-05	k: 13	n:780000
Cons ci ratio: 2.616715e-03	ci left: 7.411071e-01	ci right 7.430501e-01	k: 578822	n:780000
KS ci ratio: 2.771853e+00	ci left: 3.245873e-08	ci right 7.143112e-06	k: 1	n:780000
ZNF395   780000 perm   413 sec   (1889 perm/sec)   p_kst 1.282051e-06   p_cons 7.420795e-01   p_joint 1.666667e-05

Joint ci ratio: 1.047654e+00	ci left: 8.761993e-06	ci right 2.813958e-05	k: 13	n:790000
Cons ci ratio: 2.600468e-03	ci left: 7.410590e-01	ci right 7.429898e-01	k: 586200	n:790000
KS ci ratio: 2.771853e+00	ci left: 3.204786e-08	ci right 7.052693e-06	k: 1	n:790000
ZNF395   790000 perm   421 sec   (1875 perm/sec)   p_kst 1.265823e-06   p_cons 7.420253e-01   p_joint 1.645570e-05

Joint ci ratio: 1.012130e+00	ci left: 9.567445e-06	ci right 2.936185e-05	k: 14	n:800000
Cons ci ratio: 2.583913e-03	ci left: 7.411023e-01	ci right 7.430209e-01	k: 593650	n:800000
KS ci ratio: 2.771853e+00	ci left: 3.164726e-08	ci right 6.964534e-06	k: 1	n:800000
ZNF395   800000 perm   430 sec   (1860 perm/sec)   p_kst 1.250000e-06   p_cons 7.420625e-01   p_joint 1.750000e-05

Joint ci ratio: 1.012130e+00	ci left: 9.449328e-06	ci right 2.899936e-05	k: 14	n:810000
Cons ci ratio: 2.568225e-03	ci left: 7.410618e-01	ci right 7.429686e-01	k: 601033	n:810000
KS ci ratio: 2.771853e+00	ci left: 3.125655e-08	ci right 6.878553e-06	k: 1	n:810000
ZNF395   810000 perm   439 sec   (1846 perm/sec)   p_kst 1.234568e-06   p_cons 7.420160e-01   p_joint 1.728395e-05

Joint ci ratio: 1.012130e+00	ci left: 9.334092e-06	ci right 2.864571e-05	k: 14	n:820000
Cons ci ratio: 2.552226e-03	ci left: 7.411114e-01	ci right 7.430064e-01	k: 608489	n:820000
KS ci ratio: 2.771854e+00	ci left: 3.087538e-08	ci right 6.794668e-06	k: 1	n:820000
ZNF395   820000 perm   448 sec   (1832 perm/sec)   p_kst 1.219512e-06   p_cons 7.420598e-01   p_joint 1.707317e-05

Joint ci ratio: 1.012130e+00	ci left: 9.221632e-06	ci right 2.830059e-05	k: 14	n:830000
Cons ci ratio: 2.536250e-03	ci left: 7.412008e-01	ci right 7.430842e-01	k: 615979	n:830000
KS ci ratio: 2.771854e+00	ci left: 3.050338e-08	ci right 6.712805e-06	k: 1	n:830000
ZNF395   830000 perm   457 sec   (1818 perm/sec)   p_kst 1.204819e-06   p_cons 7.421434e-01   p_joint 1.686747e-05

Joint ci ratio: 1.012130e+00	ci left: 9.111851e-06	ci right 2.796368e-05	k: 14	n:840000
Cons ci ratio: 2.520398e-03	ci left: 7.413144e-01	ci right 7.431863e-01	k: 623491	n:840000
KS ci ratio: 2.771854e+00	ci left: 3.014025e-08	ci right 6.632891e-06	k: 1	n:840000
ZNF395   840000 perm   466 sec   (1803 perm/sec)   p_kst 1.190476e-06   p_cons 7.422512e-01   p_joint 1.666667e-05

Joint ci ratio: 1.012130e+00	ci left: 9.004652e-06	ci right 2.763469e-05	k: 14	n:850000
Cons ci ratio: 2.505833e-03	ci left: 7.412734e-01	ci right 7.431344e-01	k: 630874	n:850000
KS ci ratio: 2.771854e+00	ci left: 2.978566e-08	ci right 6.554857e-06	k: 1	n:850000
ZNF395   850000 perm   475 sec   (1790 perm/sec)   p_kst 1.176471e-06   p_cons 7.422047e-01   p_joint 1.647059e-05

Joint ci ratio: 9.799903e-01	ci left: 9.762109e-06	ci right 2.876753e-05	k: 15	n:860000
Cons ci ratio: 2.491389e-03	ci left: 7.412532e-01	ci right 7.431033e-01	k: 638274	n:860000
KS ci ratio: 2.771854e+00	ci left: 2.943931e-08	ci right 6.478638e-06	k: 1	n:860000
ZNF395   860000 perm   484 sec   (1777 perm/sec)   p_kst 1.162791e-06   p_cons 7.421791e-01   p_joint 1.744186e-05

Joint ci ratio: 9.799904e-01	ci left: 9.649900e-06	ci right 2.843687e-05	k: 15	n:870000
Cons ci ratio: 2.476678e-03	ci left: 7.413128e-01	ci right 7.431522e-01	k: 645743	n:870000
KS ci ratio: 2.771854e+00	ci left: 2.910093e-08	ci right 6.404171e-06	k: 1	n:870000
ZNF395   870000 perm   494 sec   (1763 perm/sec)   p_kst 1.149425e-06   p_cons 7.422333e-01   p_joint 1.724138e-05

Joint ci ratio: 9.799905e-01	ci left: 9.540242e-06	ci right 2.811373e-05	k: 15	n:880000
Cons ci ratio: 2.462626e-03	ci left: 7.413086e-01	ci right 7.431375e-01	k: 653157	n:880000
KS ci ratio: 2.771854e+00	ci left: 2.877024e-08	ci right 6.331396e-06	k: 1	n:880000
ZNF395   880000 perm   503 sec   (1749 perm/sec)   p_kst 1.136364e-06   p_cons 7.422239e-01   p_joint 1.704545e-05

Joint ci ratio: 9.799906e-01	ci left: 9.433048e-06	ci right 2.779785e-05	k: 15	n:890000
Cons ci ratio: 2.448826e-03	ci left: 7.413023e-01	ci right 7.431209e-01	k: 660569	n:890000
KS ci ratio: 2.771854e+00	ci left: 2.844697e-08	ci right 6.260257e-06	k: 1	n:890000
ZNF395   890000 perm   513 sec   (1736 perm/sec)   p_kst 1.123596e-06   p_cons 7.422124e-01   p_joint 1.685393e-05

Joint ci ratio: 9.799907e-01	ci left: 9.328236e-06	ci right 2.748898e-05	k: 15	n:900000
Cons ci ratio: 2.435311e-03	ci left: 7.412872e-01	ci right 7.430957e-01	k: 667973	n:900000
KS ci ratio: 2.771854e+00	ci left: 2.813090e-08	ci right 6.190699e-06	k: 1	n:900000
ZNF395   900000 perm   522 sec   (1723 perm/sec)   p_kst 1.111111e-06   p_cons 7.421922e-01   p_joint 1.666667e-05

Joint ci ratio: 9.799908e-01	ci left: 9.225727e-06	ci right 2.718691e-05	k: 15	n:910000
Cons ci ratio: 2.421712e-03	ci left: 7.413209e-01	ci right 7.431194e-01	k: 675421	n:910000
KS ci ratio: 2.771854e+00	ci left: 2.782177e-08	ci right 6.122670e-06	k: 1	n:910000
ZNF395   910000 perm   532 sec   (1710 perm/sec)   p_kst 1.098901e-06   p_cons 7.422209e-01   p_joint 1.648352e-05

Joint ci ratio: 9.799909e-01	ci left: 9.125448e-06	ci right 2.689140e-05	k: 15	n:920000
Cons ci ratio: 2.408236e-03	ci left: 7.413702e-01	ci right 7.431588e-01	k: 682884	n:920000
KS ci ratio: 2.771854e+00	ci left: 2.751936e-08	ci right 6.056119e-06	k: 1	n:920000
ZNF395   920000 perm   542 sec   (1697 perm/sec)   p_kst 1.086957e-06   p_cons 7.422652e-01   p_joint 1.630435e-05

Joint ci ratio: 9.799910e-01	ci left: 9.027324e-06	ci right 2.660225e-05	k: 15	n:930000
Cons ci ratio: 2.395096e-03	ci left: 7.414001e-01	ci right 7.431790e-01	k: 690330	n:930000
KS ci ratio: 2.771854e+00	ci left: 2.722345e-08	ci right 5.991000e-06	k: 1	n:930000
ZNF395   930000 perm   552 sec   (1685 perm/sec)   p_kst 1.075269e-06   p_cons 7.422903e-01   p_joint 1.612903e-05

Joint ci ratio: 9.799911e-01	ci left: 8.931288e-06	ci right 2.631925e-05	k: 15	n:940000
Cons ci ratio: 2.381613e-03	ci left: 7.415189e-01	ci right 7.432881e-01	k: 697860	n:940000
KS ci ratio: 2.771854e+00	ci left: 2.693384e-08	ci right 5.927266e-06	k: 1	n:940000
ZNF395   940000 perm   562 sec   (1673 perm/sec)   p_kst 1.063830e-06   p_cons 7.424043e-01   p_joint 1.595745e-05

Joint ci ratio: 9.799912e-01	ci left: 8.837275e-06	ci right 2.604220e-05	k: 15	n:950000
Cons ci ratio: 2.369482e-03	ci left: 7.414530e-01	ci right 7.432129e-01	k: 705217	n:950000
KS ci ratio: 2.771854e+00	ci left: 2.665032e-08	ci right 5.864874e-06	k: 1	n:950000
ZNF395   950000 perm   572 sec   (1662 perm/sec)   p_kst 1.052632e-06   p_cons 7.423337e-01   p_joint 1.578947e-05

Joint ci ratio: 9.799913e-01	ci left: 8.745219e-06	ci right 2.577093e-05	k: 15	n:960000
Cons ci ratio: 2.357297e-03	ci left: 7.414270e-01	ci right 7.431778e-01	k: 712611	n:960000
KS ci ratio: 2.771854e+00	ci left: 2.637272e-08	ci right 5.803781e-06	k: 1	n:960000
ZNF395   960000 perm   582 sec   (1651 perm/sec)   p_kst 1.041667e-06   p_cons 7.423031e-01   p_joint 1.562500e-05

Joint ci ratio: 9.799914e-01	ci left: 8.655062e-06	ci right 2.550525e-05	k: 15	n:970000
Cons ci ratio: 2.345367e-03	ci left: 7.413902e-01	ci right 7.431321e-01	k: 719994	n:970000
KS ci ratio: 2.771854e+00	ci left: 2.610083e-08	ci right 5.743949e-06	k: 1	n:970000
ZNF395   970000 perm   592 sec   (1639 perm/sec)   p_kst 1.030928e-06   p_cons 7.422619e-01   p_joint 1.546392e-05

Joint ci ratio: 9.799915e-01	ci left: 8.566745e-06	ci right 2.524500e-05	k: 15	n:980000
Cons ci ratio: 2.333387e-03	ci left: 7.413920e-01	ci right 7.431250e-01	k: 727414	n:980000
KS ci ratio: 2.771854e+00	ci left: 2.583450e-08	ci right 5.685337e-06	k: 1	n:980000
ZNF395   980000 perm   602 sec   (1628 perm/sec)   p_kst 1.020408e-06   p_cons 7.422592e-01   p_joint 1.530612e-05

Joint ci ratio: 9.799916e-01	ci left: 8.480212e-06	ci right 2.499000e-05	k: 15	n:990000
Cons ci ratio: 2.321478e-03	ci left: 7.414120e-01	ci right 7.431361e-01	k: 734852	n:990000
KS ci ratio: 2.771854e+00	ci left: 2.557354e-08	ci right 5.627910e-06	k: 1	n:990000
ZNF395   990000 perm   613 sec   (1616 perm/sec)   p_kst 1.010101e-06   p_cons 7.422747e-01   p_joint 1.515152e-05

Joint ci ratio: 9.799917e-01	ci left: 8.395410e-06	ci right 2.474010e-05	k: 15	n:1000000
Cons ci ratio: 2.309604e-03	ci left: 7.414556e-01	ci right 7.431710e-01	k: 742314	n:1000000
KS ci ratio: 2.771854e+00	ci left: 2.531781e-08	ci right 5.571631e-06	k: 1	n:1000000
ZNF395   1000000 perm   623 sec   (1605 perm/sec)   p_kst 1.000000e-06   p_cons 7.423140e-01   p_joint 1.500000e-05

Joint ci ratio: 9.799918e-01	ci left: 8.312287e-06	ci right 2.449515e-05	k: 15	n:1010000
Cons ci ratio: 2.298184e-03	ci left: 7.414528e-01	ci right 7.431597e-01	k: 749730	n:1010000
KS ci ratio: 2.771854e+00	ci left: 2.506714e-08	ci right 5.516466e-06	k: 1	n:1010000
ZNF395   1010000 perm   634 sec   (1594 perm/sec)   p_kst 9.900990e-07   p_cons 7.423069e-01   p_joint 1.485149e-05

Joint ci ratio: 9.799918e-01	ci left: 8.230793e-06	ci right 2.425500e-05	k: 15	n:1020000
Cons ci ratio: 2.286663e-03	ci left: 7.414952e-01	ci right 7.431936e-01	k: 757192	n:1020000
KS ci ratio: 2.771855e+00	ci left: 2.482138e-08	ci right 5.462383e-06	k: 1	n:1020000
ZNF395   1020000 perm   644 sec   (1583 perm/sec)   p_kst 9.803922e-07   p_cons 7.423451e-01   p_joint 1.470588e-05

Joint ci ratio: 9.799919e-01	ci left: 8.150882e-06	ci right 2.401952e-05	k: 15	n:1030000
Cons ci ratio: 2.275307e-03	ci left: 7.415378e-01	ci right 7.432279e-01	k: 764655	n:1030000
KS ci ratio: 2.771855e+00	ci left: 2.458040e-08	ci right 5.409351e-06	k: 1	n:1030000
ZNF395   1030000 perm   655 sec   (1572 perm/sec)   p_kst 9.708738e-07   p_cons 7.423835e-01   p_joint 1.456311e-05

Joint ci ratio: 9.799920e-01	ci left: 8.072508e-06	ci right 2.378856e-05	k: 15	n:1040000
Cons ci ratio: 2.264916e-03	ci left: 7.414448e-01	ci right 7.431269e-01	k: 771978	n:1040000
KS ci ratio: 2.771855e+00	ci left: 2.434405e-08	ci right 5.357338e-06	k: 1	n:1040000
ZNF395   1040000 perm   666 sec   (1562 perm/sec)   p_kst 9.615385e-07   p_cons 7.422865e-01   p_joint 1.442308e-05

Joint ci ratio: 9.799921e-01	ci left: 7.995627e-06	ci right 2.356200e-05	k: 15	n:1050000
Cons ci ratio: 2.253728e-03	ci left: 7.415128e-01	ci right 7.431868e-01	k: 779468	n:1050000
KS ci ratio: 2.771855e+00	ci left: 2.411220e-08	ci right 5.306315e-06	k: 1	n:1050000
ZNF395   1050000 perm   677 sec   (1551 perm/sec)   p_kst 9.523810e-07   p_cons 7.423505e-01   p_joint 1.428571e-05

Joint ci ratio: 9.799921e-01	ci left: 7.920197e-06	ci right 2.333972e-05	k: 15	n:1060000
Cons ci ratio: 2.243191e-03	ci left: 7.414965e-01	ci right 7.431626e-01	k: 786870	n:1060000
KS ci ratio: 2.771855e+00	ci left: 2.388472e-08	ci right 5.256256e-06	k: 1	n:1060000
ZNF395   1060000 perm   688 sec   (1541 perm/sec)   p_kst 9.433962e-07   p_cons 7.423302e-01   p_joint 1.415094e-05

Joint ci ratio: 9.799922e-01	ci left: 7.846176e-06	ci right 2.312159e-05	k: 15	n:1070000
Cons ci ratio: 2.232500e-03	ci left: 7.415319e-01	ci right 7.431901e-01	k: 794327	n:1070000
KS ci ratio: 2.771855e+00	ci left: 2.366150e-08	ci right 5.207132e-06	k: 1	n:1070000
ZNF395   1070000 perm   699 sec   (1531 perm/sec)   p_kst 9.345794e-07   p_cons 7.423617e-01   p_joint 1.401869e-05

Joint ci ratio: 9.507317e-01	ci left: 8.467970e-06	ci right 2.405822e-05	k: 16	n:1080000
Cons ci ratio: 2.222122e-03	ci left: 7.415389e-01	ci right 7.431894e-01	k: 801754	n:1080000
KS ci ratio: 2.771855e+00	ci left: 2.344241e-08	ci right 5.158918e-06	k: 1	n:1080000
ZNF395   1080000 perm   710 sec   (1521 perm/sec)   p_kst 9.259259e-07   p_cons 7.423648e-01   p_joint 1.481481e-05

Joint ci ratio: 9.507318e-01	ci left: 8.390282e-06	ci right 2.383750e-05	k: 16	n:1090000
Cons ci ratio: 2.212058e-03	ci left: 7.415164e-01	ci right 7.431594e-01	k: 809149	n:1090000
KS ci ratio: 2.771855e+00	ci left: 2.322735e-08	ci right 5.111589e-06	k: 1	n:1090000
ZNF395   1090000 perm   722 sec   (1511 perm/sec)   p_kst 9.174312e-07   p_cons 7.423385e-01   p_joint 1.467890e-05

Joint ci ratio: 9.507319e-01	ci left: 8.314006e-06	ci right 2.362080e-05	k: 16	n:1100000
Cons ci ratio: 2.202134e-03	ci left: 7.414934e-01	ci right 7.431290e-01	k: 816543	n:1100000
KS ci ratio: 2.771855e+00	ci left: 2.301619e-08	ci right 5.065120e-06	k: 1	n:1100000
ZNF395   1100000 perm   733 sec   (1501 perm/sec)   p_kst 9.090909e-07   p_cons 7.423118e-01   p_joint 1.454545e-05

Joint ci ratio: 9.507319e-01	ci left: 8.239105e-06	ci right 2.340800e-05	k: 16	n:1110000
Cons ci ratio: 2.192404e-03	ci left: 7.414600e-01	ci right 7.430883e-01	k: 823925	n:1110000
KS ci ratio: 2.771855e+00	ci left: 2.280884e-08	ci right 5.019488e-06	k: 1	n:1110000
ZNF395   1110000 perm   744 sec   (1491 perm/sec)   p_kst 9.009009e-07   p_cons 7.422748e-01   p_joint 1.441441e-05

Joint ci ratio: 9.507320e-01	ci left: 8.165541e-06	ci right 2.319900e-05	k: 16	n:1120000
Cons ci ratio: 2.182629e-03	ci left: 7.414576e-01	ci right 7.430786e-01	k: 831341	n:1120000
KS ci ratio: 2.771855e+00	ci left: 2.260519e-08	ci right 4.974671e-06	k: 1	n:1120000
ZNF395   1120000 perm   756 sec   (1482 perm/sec)   p_kst 8.928571e-07   p_cons 7.422688e-01   p_joint 1.428571e-05

Joint ci ratio: 9.507321e-01	ci left: 8.093280e-06	ci right 2.299370e-05	k: 16	n:1130000
Cons ci ratio: 2.173079e-03	ci left: 7.414385e-01	ci right 7.430523e-01	k: 838738	n:1130000
KS ci ratio: 2.771855e+00	ci left: 2.240514e-08	ci right 4.930648e-06	k: 1	n:1130000
ZNF395   1130000 perm   767 sec   (1472 perm/sec)   p_kst 8.849558e-07   p_cons 7.422460e-01   p_joint 1.415929e-05

Joint ci ratio: 9.507321e-01	ci left: 8.022286e-06	ci right 2.279200e-05	k: 16	n:1140000
Cons ci ratio: 2.163723e-03	ci left: 7.414074e-01	ci right 7.430142e-01	k: 846121	n:1140000
KS ci ratio: 2.771855e+00	ci left: 2.220860e-08	ci right 4.887397e-06	k: 1	n:1140000
ZNF395   1140000 perm   779 sec   (1463 perm/sec)   p_kst 8.771930e-07   p_cons 7.422114e-01   p_joint 1.403509e-05

Joint ci ratio: 9.507322e-01	ci left: 7.952527e-06	ci right 2.259381e-05	k: 16	n:1150000
Cons ci ratio: 2.154594e-03	ci left: 7.413577e-01	ci right 7.429576e-01	k: 853482	n:1150000
KS ci ratio: 2.771855e+00	ci left: 2.201548e-08	ci right 4.844898e-06	k: 1	n:1150000
ZNF395   1150000 perm   791 sec   (1454 perm/sec)   p_kst 8.695652e-07   p_cons 7.421583e-01   p_joint 1.391304e-05

Joint ci ratio: 9.799928e-01	ci left: 7.237419e-06	ci right 2.132769e-05	k: 15	n:1160000
Cons ci ratio: 2.145579e-03	ci left: 7.413089e-01	ci right 7.429020e-01	k: 860843	n:1160000
KS ci ratio: 2.771855e+00	ci left: 2.182570e-08	ci right 4.803131e-06	k: 1	n:1160000
ZNF395   1160000 perm   803 sec   (1444 perm/sec)   p_kst 8.620690e-07   p_cons 7.421060e-01   p_joint 1.293103e-05

Joint ci ratio: 9.799929e-01	ci left: 7.175561e-06	ci right 2.114540e-05	k: 15	n:1170000
Cons ci ratio: 2.136119e-03	ci left: 7.413610e-01	ci right 7.429472e-01	k: 868321	n:1170000
KS ci ratio: 2.771855e+00	ci left: 2.163915e-08	ci right 4.762079e-06	k: 1	n:1170000
ZNF395   1170000 perm   815 sec   (1436 perm/sec)   p_kst 8.547009e-07   p_cons 7.421547e-01   p_joint 1.282051e-05

Joint ci ratio: 9.799929e-01	ci left: 7.114751e-06	ci right 2.096620e-05	k: 15	n:1180000
Cons ci ratio: 2.126853e-03	ci left: 7.413996e-01	ci right 7.429789e-01	k: 875784	n:1180000
KS ci ratio: 2.771855e+00	ci left: 2.145577e-08	ci right 4.721723e-06	k: 1	n:1180000
ZNF395   1180000 perm   827 sec   (1427 perm/sec)   p_kst 8.474576e-07   p_cons 7.421898e-01   p_joint 1.271186e-05

Joint ci ratio: 9.799930e-01	ci left: 7.054963e-06	ci right 2.079001e-05	k: 15	n:1190000
Cons ci ratio: 2.117497e-03	ci left: 7.414753e-01	ci right 7.430479e-01	k: 883292	n:1190000
KS ci ratio: 2.771855e+00	ci left: 2.127547e-08	ci right 4.682044e-06	k: 1	n:1190000
ZNF395   1190000 perm   839 sec   (1419 perm/sec)   p_kst 8.403361e-07   p_cons 7.422622e-01   p_joint 1.260504e-05

Joint ci ratio: 9.799931e-01	ci left: 6.996171e-06	ci right 2.061677e-05	k: 15	n:1200000
Cons ci ratio: 2.108608e-03	ci left: 7.414873e-01	ci right 7.430532e-01	k: 890725	n:1200000
KS ci ratio: 2.771855e+00	ci left: 2.109817e-08	ci right 4.643027e-06	k: 1	n:1200000
ZNF395   1200000 perm   851 sec   (1410 perm/sec)   p_kst 8.333333e-07   p_cons 7.422708e-01   p_joint 1.250000e-05

Joint ci ratio: 9.799931e-01	ci left: 6.938352e-06	ci right 2.044638e-05	k: 15	n:1210000
Cons ci ratio: 2.100084e-03	ci left: 7.414527e-01	ci right 7.430123e-01	k: 898102	n:1210000
KS ci ratio: 2.771855e+00	ci left: 2.092381e-08	ci right 4.604655e-06	k: 1	n:1210000
ZNF395   1210000 perm   863 sec   (1401 perm/sec)   p_kst 8.264463e-07   p_cons 7.422331e-01   p_joint 1.239669e-05

Joint ci ratio: 9.799932e-01	ci left: 6.881480e-06	ci right 2.027879e-05	k: 15	n:1220000
Cons ci ratio: 2.091493e-03	ci left: 7.414499e-01	ci right 7.430031e-01	k: 905517	n:1220000
KS ci ratio: 2.771855e+00	ci left: 2.075230e-08	ci right 4.566912e-06	k: 1	n:1220000
ZNF395   1220000 perm   876 sec   (1393 perm/sec)   p_kst 8.196721e-07   p_cons 7.422270e-01   p_joint 1.229508e-05

Joint ci ratio: 9.799932e-01	ci left: 6.825533e-06	ci right 2.011392e-05	k: 15	n:1230000
Cons ci ratio: 2.083152e-03	ci left: 7.414203e-01	ci right 7.429672e-01	k: 912899	n:1230000
KS ci ratio: 2.771855e+00	ci left: 2.058358e-08	ci right 4.529783e-06	k: 1	n:1230000
ZNF395   1230000 perm   888 sec   (1385 perm/sec)   p_kst 8.130081e-07   p_cons 7.421943e-01   p_joint 1.219512e-05

Joint ci ratio: 9.799933e-01	ci left: 6.770488e-06	ci right 1.995171e-05	k: 15	n:1240000
Cons ci ratio: 2.074857e-03	ci left: 7.414009e-01	ci right 7.429415e-01	k: 920293	n:1240000
KS ci ratio: 2.771855e+00	ci left: 2.041759e-08	ci right 4.493253e-06	k: 1	n:1240000
ZNF395   1240000 perm   901 sec   (1377 perm/sec)   p_kst 8.064516e-07   p_cons 7.421718e-01   p_joint 1.209677e-05

Joint ci ratio: 9.799933e-01	ci left: 6.716324e-06	ci right 1.979210e-05	k: 15	n:1250000
Cons ci ratio: 2.066544e-03	ci left: 7.414034e-01	ci right 7.429379e-01	k: 927714	n:1250000
KS ci ratio: 2.771855e+00	ci left: 2.025425e-08	ci right 4.457307e-06	k: 1	n:1250000
ZNF395   1250000 perm   913 sec   (1369 perm/sec)   p_kst 8.000000e-07   p_cons 7.421712e-01   p_joint 1.200000e-05

Joint ci ratio: 9.799934e-01	ci left: 6.663020e-06	ci right 1.963502e-05	k: 15	n:1260000
Cons ci ratio: 2.058407e-03	ci left: 7.413916e-01	ci right 7.429200e-01	k: 935117	n:1260000
KS ci ratio: 2.771855e+00	ci left: 2.009350e-08	ci right 4.421931e-06	k: 1	n:1260000
ZNF395   1260000 perm   926 sec   (1361 perm/sec)   p_kst 7.936508e-07   p_cons 7.421563e-01   p_joint 1.190476e-05

Joint ci ratio: 9.799934e-01	ci left: 6.610555e-06	ci right 1.948041e-05	k: 15	n:1270000
Cons ci ratio: 2.050547e-03	ci left: 7.413461e-01	ci right 7.428686e-01	k: 942477	n:1270000
KS ci ratio: 2.771855e+00	ci left: 1.993528e-08	ci right 4.387113e-06	k: 1	n:1270000
ZNF395   1270000 perm   939 sec   (1353 perm/sec)   p_kst 7.874016e-07   p_cons 7.421079e-01   p_joint 1.181102e-05

Joint ci ratio: 9.799935e-01	ci left: 6.558910e-06	ci right 1.932822e-05	k: 15	n:1280000
Cons ci ratio: 2.042525e-03	ci left: 7.413482e-01	ci right 7.428647e-01	k: 949897	n:1280000
KS ci ratio: 2.771855e+00	ci left: 1.977954e-08	ci right 4.352839e-06	k: 1	n:1280000
ZNF395   1280000 perm   952 sec   (1345 perm/sec)   p_kst 7.812500e-07   p_cons 7.421070e-01   p_joint 1.171875e-05

Joint ci ratio: 9.799935e-01	ci left: 6.508065e-06	ci right 1.917839e-05	k: 15	n:1290000
Cons ci ratio: 2.034837e-03	ci left: 7.413053e-01	ci right 7.428161e-01	k: 957259	n:1290000
KS ci ratio: 2.771855e+00	ci left: 1.962621e-08	ci right 4.319096e-06	k: 1	n:1290000
ZNF395   1290000 perm   965 sec   (1337 perm/sec)   p_kst 7.751938e-07   p_cons 7.420612e-01   p_joint 1.162791e-05

Joint ci ratio: 9.799936e-01	ci left: 6.458003e-06	ci right 1.903087e-05	k: 15	n:1300000
Cons ci ratio: 2.026908e-03	ci left: 7.413247e-01	ci right 7.428296e-01	k: 964701	n:1300000
KS ci ratio: 2.771855e+00	ci left: 1.947524e-08	ci right 4.285872e-06	k: 1	n:1300000
ZNF395   1300000 perm   978 sec   (1330 perm/sec)   p_kst 7.692308e-07   p_cons 7.420777e-01   p_joint 1.153846e-05

Joint ci ratio: 9.799936e-01	ci left: 6.408705e-06	ci right 1.888559e-05	k: 15	n:1310000
Cons ci ratio: 2.018955e-03	ci left: 7.413660e-01	ci right 7.428650e-01	k: 972172	n:1310000
KS ci ratio: 2.771855e+00	ci left: 1.932657e-08	ci right 4.253155e-06	k: 1	n:1310000
ZNF395   1310000 perm   991 sec   (1322 perm/sec)   p_kst 7.633588e-07   p_cons 7.421160e-01   p_joint 1.145038e-05

Joint ci ratio: 9.799937e-01	ci left: 6.360155e-06	ci right 1.874252e-05	k: 15	n:1320000
Cons ci ratio: 2.011401e-03	ci left: 7.413482e-01	ci right 7.428416e-01	k: 979566	n:1320000
KS ci ratio: 2.771855e+00	ci left: 1.918016e-08	ci right 4.220935e-06	k: 1	n:1320000
ZNF395   1320000 perm   1004 sec   (1315 perm/sec)   p_kst 7.575758e-07   p_cons 7.420955e-01   p_joint 1.136364e-05

Joint ci ratio: 9.799937e-01	ci left: 6.312334e-06	ci right 1.860160e-05	k: 15	n:1330000
Cons ci ratio: 2.003569e-03	ci left: 7.414000e-01	ci right 7.428877e-01	k: 987052	n:1330000
KS ci ratio: 2.771855e+00	ci left: 1.903595e-08	ci right 4.189198e-06	k: 1	n:1330000
ZNF395   1330000 perm   1017 sec   (1308 perm/sec)   p_kst 7.518797e-07   p_cons 7.421444e-01   p_joint 1.127820e-05

Joint ci ratio: 9.799938e-01	ci left: 6.265227e-06	ci right 1.846278e-05	k: 15	n:1340000
Cons ci ratio: 1.996194e-03	ci left: 7.413808e-01	ci right 7.428629e-01	k: 994444	n:1340000
KS ci ratio: 2.771855e+00	ci left: 1.889389e-08	ci right 4.157936e-06	k: 1	n:1340000
ZNF395   1340000 perm   1031 sec   (1300 perm/sec)   p_kst 7.462687e-07   p_cons 7.421224e-01   p_joint 1.119403e-05

Joint ci ratio: 9.799938e-01	ci left: 6.218817e-06	ci right 1.832602e-05	k: 15	n:1350000
Cons ci ratio: 1.988606e-03	ci left: 7.414182e-01	ci right 7.428948e-01	k: 1001912	n:1350000
KS ci ratio: 2.771856e+00	ci left: 1.875393e-08	ci right 4.127136e-06	k: 1	n:1350000
ZNF395   1350000 perm   1044 sec   (1293 perm/sec)   p_kst 7.407407e-07   p_cons 7.421570e-01   p_joint 1.111111e-05

Joint ci ratio: 9.507334e-01	ci left: 6.724560e-06	ci right 1.910508e-05	k: 16	n:1360000
Cons ci ratio: 1.981322e-03	ci left: 7.414132e-01	ci right 7.428843e-01	k: 1009323	n:1360000
KS ci ratio: 2.771856e+00	ci left: 1.861604e-08	ci right 4.096790e-06	k: 1	n:1360000
ZNF395   1360000 perm   1057 sec   (1286 perm/sec)   p_kst 7.352941e-07   p_cons 7.421493e-01   p_joint 1.176471e-05

Joint ci ratio: 9.507334e-01	ci left: 6.675476e-06	ci right 1.896562e-05	k: 16	n:1370000
Cons ci ratio: 1.973842e-03	ci left: 7.414615e-01	ci right 7.429272e-01	k: 1016807	n:1370000
KS ci ratio: 2.771856e+00	ci left: 1.848015e-08	ci right 4.066886e-06	k: 1	n:1370000
ZNF395   1370000 perm   1071 sec   (1279 perm/sec)   p_kst 7.299270e-07   p_cons 7.421949e-01   p_joint 1.167883e-05

Joint ci ratio: 9.507334e-01	ci left: 6.627103e-06	ci right 1.882819e-05	k: 16	n:1380000
Cons ci ratio: 1.966573e-03	ci left: 7.414846e-01	ci right 7.429449e-01	k: 1024257	n:1380000
KS ci ratio: 2.771856e+00	ci left: 1.834624e-08	ci right 4.037416e-06	k: 1	n:1380000
ZNF395   1380000 perm   1084 sec   (1273 perm/sec)   p_kst 7.246377e-07   p_cons 7.422152e-01   p_joint 1.159420e-05

Joint ci ratio: 9.507335e-01	ci left: 6.579426e-06	ci right 1.869274e-05	k: 16	n:1390000
Cons ci ratio: 1.959605e-03	ci left: 7.414640e-01	ci right 7.429191e-01	k: 1031647	n:1390000
KS ci ratio: 2.771856e+00	ci left: 1.821425e-08	ci right 4.008370e-06	k: 1	n:1390000
ZNF395   1390000 perm   1098 sec   (1266 perm/sec)   p_kst 7.194245e-07   p_cons 7.421921e-01   p_joint 1.151079e-05

Joint ci ratio: 8.993033e-01	ci left: 7.619975e-06	ci right 2.031975e-05	k: 18	n:1400000
Cons ci ratio: 1.952444e-03	ci left: 7.414960e-01	ci right 7.429458e-01	k: 1039110	n:1400000
KS ci ratio: 2.771856e+00	ci left: 1.808415e-08	ci right 3.979739e-06	k: 1	n:1400000
ZNF395   1400000 perm   1112 sec   (1259 perm/sec)   p_kst 7.142857e-07   p_cons 7.422214e-01   p_joint 1.285714e-05

Joint ci ratio: 8.993033e-01	ci left: 7.565932e-06	ci right 2.017564e-05	k: 18	n:1410000
Cons ci ratio: 1.945441e-03	ci left: 7.415119e-01	ci right 7.429566e-01	k: 1046551	n:1410000
KS ci ratio: 2.771856e+00	ci left: 1.795589e-08	ci right 3.951514e-06	k: 1	n:1410000
ZNF395   1410000 perm   1126 sec   (1253 perm/sec)   p_kst 7.092199e-07   p_cons 7.422348e-01   p_joint 1.276596e-05

Joint ci ratio: 8.993033e-01	ci left: 7.512651e-06	ci right 2.003356e-05	k: 18	n:1420000
Cons ci ratio: 1.938423e-03	ci left: 7.415452e-01	ci right 7.429847e-01	k: 1054017	n:1420000
KS ci ratio: 2.771856e+00	ci left: 1.782944e-08	ci right 3.923686e-06	k: 1	n:1420000
ZNF395   1420000 perm   1140 sec   (1246 perm/sec)   p_kst 7.042254e-07   p_cons 7.422655e-01   p_joint 1.267606e-05

Joint ci ratio: 8.993034e-01	ci left: 7.460115e-06	ci right 1.989347e-05	k: 18	n:1430000
Cons ci ratio: 1.931508e-03	ci left: 7.415725e-01	ci right 7.430069e-01	k: 1061475	n:1430000
KS ci ratio: 2.771856e+00	ci left: 1.770476e-08	ci right 3.896248e-06	k: 1	n:1430000
ZNF395   1430000 perm   1154 sec   (1239 perm/sec)   p_kst 6.993007e-07   p_cons 7.422902e-01   p_joint 1.258741e-05

Joint ci ratio: 8.993034e-01	ci left: 7.408308e-06	ci right 1.975532e-05	k: 18	n:1440000
Cons ci ratio: 1.924846e-03	ci left: 7.415640e-01	ci right 7.429934e-01	k: 1068882	n:1440000
KS ci ratio: 2.771856e+00	ci left: 1.758181e-08	ci right 3.869191e-06	k: 1	n:1440000
ZNF395   1440000 perm   1168 sec   (1233 perm/sec)   p_kst 6.944444e-07   p_cons 7.422792e-01   p_joint 1.250000e-05

Joint ci ratio: 8.993035e-01	ci left: 7.357217e-06	ci right 1.961907e-05	k: 18	n:1450000
Cons ci ratio: 1.918255e-03	ci left: 7.415548e-01	ci right 7.429794e-01	k: 1076288	n:1450000
KS ci ratio: 2.771856e+00	ci left: 1.746056e-08	ci right 3.842507e-06	k: 1	n:1450000
ZNF395   1450000 perm   1182 sec   (1226 perm/sec)   p_kst 6.896552e-07   p_cons 7.422676e-01   p_joint 1.241379e-05

Joint ci ratio: 8.993035e-01	ci left: 7.306825e-06	ci right 1.948470e-05	k: 18	n:1460000
Cons ci ratio: 1.911940e-03	ci left: 7.415040e-01	ci right 7.429238e-01	k: 1083633	n:1460000
KS ci ratio: 2.771856e+00	ci left: 1.734096e-08	ci right 3.816188e-06	k: 1	n:1460000
ZNF395   1460000 perm   1197 sec   (1220 perm/sec)   p_kst 6.849315e-07   p_cons 7.422144e-01   p_joint 1.232877e-05

Joint ci ratio: 8.993036e-01	ci left: 7.257118e-06	ci right 1.935215e-05	k: 18	n:1470000
Cons ci ratio: 1.905606e-03	ci left: 7.414703e-01	ci right 7.428852e-01	k: 1091002	n:1470000
KS ci ratio: 2.771856e+00	ci left: 1.722300e-08	ci right 3.790228e-06	k: 1	n:1470000
ZNF395   1470000 perm   1213 sec   (1212 perm/sec)   p_kst 6.802721e-07   p_cons 7.421782e-01   p_joint 1.224490e-05

Joint ci ratio: 8.993036e-01	ci left: 7.208084e-06	ci right 1.922139e-05	k: 18	n:1480000
Cons ci ratio: 1.899240e-03	ci left: 7.414559e-01	ci right 7.428661e-01	k: 1098399	n:1480000
KS ci ratio: 2.771856e+00	ci left: 1.710663e-08	ci right 3.764618e-06	k: 1	n:1480000
ZNF395   1480000 perm   1230 sec   (1203 perm/sec)   p_kst 6.756757e-07   p_cons 7.421615e-01   p_joint 1.216216e-05

Joint ci ratio: 8.993036e-01	ci left: 7.159707e-06	ci right 1.909239e-05	k: 18	n:1490000
Cons ci ratio: 1.892792e-03	ci left: 7.414713e-01	ci right 7.428767e-01	k: 1105840	n:1490000
KS ci ratio: 2.771856e+00	ci left: 1.699182e-08	ci right 3.739352e-06	k: 1	n:1490000
ZNF395   1490000 perm   1245 sec   (1197 perm/sec)   p_kst 6.711409e-07   p_cons 7.421745e-01   p_joint 1.208054e-05

Joint ci ratio: 8.993037e-01	ci left: 7.111976e-06	ci right 1.896511e-05	k: 18	n:1500000
Cons ci ratio: 1.886550e-03	ci left: 7.414578e-01	ci right 7.428586e-01	k: 1113238	n:1500000
KS ci ratio: 2.771856e+00	ci left: 1.687854e-08	ci right 3.714423e-06	k: 1	n:1500000
ZNF395   1500000 perm   1260 sec   (1191 perm/sec)   p_kst 6.666667e-07   p_cons 7.421587e-01   p_joint 1.200000e-05

Joint ci ratio: 8.993037e-01	ci left: 7.064876e-06	ci right 1.883951e-05	k: 18	n:1510000
Cons ci ratio: 1.880141e-03	ci left: 7.414909e-01	ci right 7.428870e-01	k: 1120706	n:1510000
KS ci ratio: 2.771856e+00	ci left: 1.676676e-08	ci right 3.689824e-06	k: 1	n:1510000
ZNF395   1510000 perm   1275 sec   (1185 perm/sec)   p_kst 6.622517e-07   p_cons 7.421894e-01   p_joint 1.192053e-05

Joint ci ratio: 8.993038e-01	ci left: 7.018397e-06	ci right 1.871557e-05	k: 18	n:1520000
Cons ci ratio: 1.873634e-03	ci left: 7.415572e-01	ci right 7.429485e-01	k: 1128225	n:1520000
KS ci ratio: 2.771856e+00	ci left: 1.665645e-08	ci right 3.665549e-06	k: 1	n:1520000
ZNF395   1520000 perm   1289 sec   (1179 perm/sec)   p_kst 6.578947e-07   p_cons 7.422533e-01   p_joint 1.184211e-05

Joint ci ratio: 8.765326e-01	ci left: 7.476644e-06	ci right 1.939265e-05	k: 19	n:1530000
Cons ci ratio: 1.867522e-03	ci left: 7.415552e-01	ci right 7.429420e-01	k: 1135641	n:1530000
KS ci ratio: 2.771856e+00	ci left: 1.654759e-08	ci right 3.641592e-06	k: 1	n:1530000
ZNF395   1530000 perm   1304 sec   (1173 perm/sec)   p_kst 6.535948e-07   p_cons 7.422490e-01   p_joint 1.241830e-05

Joint ci ratio: 8.765327e-01	ci left: 7.428095e-06	ci right 1.926672e-05	k: 19	n:1540000
Cons ci ratio: 1.861488e-03	ci left: 7.415493e-01	ci right 7.429316e-01	k: 1143051	n:1540000
KS ci ratio: 2.771856e+00	ci left: 1.644014e-08	ci right 3.617945e-06	k: 1	n:1540000
ZNF395   1540000 perm   1319 sec   (1167 perm/sec)   p_kst 6.493506e-07   p_cons 7.422409e-01   p_joint 1.233766e-05

Joint ci ratio: 8.765327e-01	ci left: 7.380171e-06	ci right 1.914242e-05	k: 19	n:1550000
Cons ci ratio: 1.855387e-03	ci left: 7.415694e-01	ci right 7.429472e-01	k: 1150501	n:1550000
KS ci ratio: 2.771856e+00	ci left: 1.633407e-08	ci right 3.594603e-06	k: 1	n:1550000
ZNF395   1550000 perm   1335 sec   (1161 perm/sec)   p_kst 6.451613e-07   p_cons 7.422587e-01   p_joint 1.225806e-05

Joint ci ratio: 8.765327e-01	ci left: 7.332862e-06	ci right 1.901971e-05	k: 19	n:1560000
Cons ci ratio: 1.849547e-03	ci left: 7.415475e-01	ci right 7.429209e-01	k: 1157886	n:1560000
KS ci ratio: 2.771856e+00	ci left: 1.622936e-08	ci right 3.571561e-06	k: 1	n:1560000
ZNF395   1560000 perm   1350 sec   (1156 perm/sec)   p_kst 6.410256e-07   p_cons 7.422346e-01   p_joint 1.217949e-05

Joint ci ratio: 8.765328e-01	ci left: 7.286156e-06	ci right 1.889857e-05	k: 19	n:1570000
Cons ci ratio: 1.843593e-03	ci left: 7.415609e-01	ci right 7.429299e-01	k: 1165326	n:1570000
KS ci ratio: 2.771856e+00	ci left: 1.612599e-08	ci right 3.548812e-06	k: 1	n:1570000
ZNF395   1570000 perm   1365 sec   (1150 perm/sec)   p_kst 6.369427e-07   p_cons 7.422459e-01   p_joint 1.210191e-05

Joint ci ratio: 8.765328e-01	ci left: 7.240041e-06	ci right 1.877896e-05	k: 19	n:1580000
Cons ci ratio: 1.837763e-03	ci left: 7.415603e-01	ci right 7.429249e-01	k: 1172744	n:1580000
KS ci ratio: 2.771856e+00	ci left: 1.602393e-08	ci right 3.526351e-06	k: 1	n:1580000
ZNF395   1580000 perm   1380 sec   (1145 perm/sec)   p_kst 6.329114e-07   p_cons 7.422430e-01   p_joint 1.202532e-05

Joint ci ratio: 8.765329e-01	ci left: 7.194506e-06	ci right 1.866085e-05	k: 19	n:1590000
Cons ci ratio: 1.831979e-03	ci left: 7.415615e-01	ci right 7.429219e-01	k: 1180165	n:1590000
KS ci ratio: 2.771856e+00	ci left: 1.592315e-08	ci right 3.504173e-06	k: 1	n:1590000
ZNF395   1590000 perm   1396 sec   (1139 perm/sec)   p_kst 6.289308e-07   p_cons 7.422421e-01   p_joint 1.194969e-05

Joint ci ratio: 8.765329e-01	ci left: 7.149540e-06	ci right 1.854422e-05	k: 19	n:1600000
Cons ci ratio: 1.826491e-03	ci left: 7.415121e-01	ci right 7.428683e-01	k: 1187505	n:1600000
KS ci ratio: 2.771856e+00	ci left: 1.582363e-08	ci right 3.482272e-06	k: 1	n:1600000
ZNF395   1600000 perm   1412 sec   (1134 perm/sec)   p_kst 6.250000e-07   p_cons 7.421906e-01   p_joint 1.187500e-05

Joint ci ratio: 8.765329e-01	ci left: 7.105133e-06	ci right 1.842904e-05	k: 19	n:1610000
Cons ci ratio: 1.820677e-03	ci left: 7.415422e-01	ci right 7.428942e-01	k: 1194972	n:1610000
KS ci ratio: 2.771856e+00	ci left: 1.572535e-08	ci right 3.460643e-06	k: 1	n:1610000
ZNF395   1610000 perm   1427 sec   (1128 perm/sec)   p_kst 6.211180e-07   p_cons 7.422186e-01   p_joint 1.180124e-05

Joint ci ratio: 8.765330e-01	ci left: 7.061274e-06	ci right 1.831528e-05	k: 19	n:1620000
Cons ci ratio: 1.814877e-03	ci left: 7.415807e-01	ci right 7.429284e-01	k: 1202453	n:1620000
KS ci ratio: 2.771856e+00	ci left: 1.562828e-08	ci right 3.439281e-06	k: 1	n:1620000
ZNF395   1620000 perm   1443 sec   (1123 perm/sec)   p_kst 6.172840e-07   p_cons 7.422549e-01   p_joint 1.172840e-05

Joint ci ratio: 8.765330e-01	ci left: 7.017953e-06	ci right 1.820292e-05	k: 19	n:1630000
Cons ci ratio: 1.809155e-03	ci left: 7.416137e-01	ci right 7.429572e-01	k: 1209926	n:1630000
KS ci ratio: 2.771856e+00	ci left: 1.553240e-08	ci right 3.418181e-06	k: 1	n:1630000
ZNF395   1630000 perm   1459 sec   (1117 perm/sec)   p_kst 6.134969e-07   p_cons 7.422859e-01   p_joint 1.165644e-05

Joint ci ratio: 8.765330e-01	ci left: 6.975161e-06	ci right 1.809193e-05	k: 19	n:1640000
Cons ci ratio: 1.803731e-03	ci left: 7.415945e-01	ci right 7.429339e-01	k: 1217314	n:1640000
KS ci ratio: 2.771856e+00	ci left: 1.543769e-08	ci right 3.397339e-06	k: 1	n:1640000
ZNF395   1640000 perm   1475 sec   (1112 perm/sec)   p_kst 6.097561e-07   p_cons 7.422646e-01   p_joint 1.158537e-05

Joint ci ratio: 8.765331e-01	ci left: 6.932887e-06	ci right 1.798228e-05	k: 19	n:1650000
Cons ci ratio: 1.798176e-03	ci left: 7.416137e-01	ci right 7.429491e-01	k: 1224765	n:1650000
KS ci ratio: 2.771856e+00	ci left: 1.534413e-08	ci right 3.376749e-06	k: 1	n:1650000
ZNF395   1650000 perm   1490 sec   (1107 perm/sec)   p_kst 6.060606e-07   p_cons 7.422818e-01   p_joint 1.151515e-05

Joint ci ratio: 8.765331e-01	ci left: 6.891123e-06	ci right 1.787395e-05	k: 19	n:1660000
Cons ci ratio: 1.792850e-03	ci left: 7.415948e-01	ci right 7.429261e-01	k: 1232153	n:1660000
KS ci ratio: 2.771856e+00	ci left: 1.525169e-08	ci right 3.356407e-06	k: 1	n:1660000
ZNF395   1660000 perm   1507 sec   (1102 perm/sec)   p_kst 6.024096e-07   p_cons 7.422608e-01   p_joint 1.144578e-05

Joint ci ratio: 8.765331e-01	ci left: 6.849858e-06	ci right 1.776692e-05	k: 19	n:1670000
Cons ci ratio: 1.787305e-03	ci left: 7.416329e-01	ci right 7.429602e-01	k: 1239636	n:1670000
KS ci ratio: 2.771856e+00	ci left: 1.516036e-08	ci right 3.336309e-06	k: 1	n:1670000
ZNF395   1670000 perm   1523 sec   (1097 perm/sec)   p_kst 5.988024e-07   p_cons 7.422970e-01   p_joint 1.137725e-05

Joint ci ratio: 8.765332e-01	ci left: 6.809085e-06	ci right 1.766117e-05	k: 19	n:1680000
Cons ci ratio: 1.781894e-03	ci left: 7.416528e-01	ci right 7.429761e-01	k: 1247089	n:1680000
KS ci ratio: 2.771856e+00	ci left: 1.507012e-08	ci right 3.316450e-06	k: 1	n:1680000
ZNF395   1680000 perm   1539 sec   (1092 perm/sec)   p_kst 5.952381e-07   p_cons 7.423149e-01   p_joint 1.130952e-05

Joint ci ratio: 8.765332e-01	ci left: 6.768795e-06	ci right 1.755666e-05	k: 19	n:1690000
Cons ci ratio: 1.776403e-03	ci left: 7.417003e-01	ci right 7.430196e-01	k: 1254589	n:1690000
KS ci ratio: 2.771856e+00	ci left: 1.498095e-08	ci right 3.296826e-06	k: 1	n:1690000
ZNF395   1690000 perm   1555 sec   (1087 perm/sec)   p_kst 5.917160e-07   p_cons 7.423604e-01   p_joint 1.124260e-05

Joint ci ratio: 8.554086e-01	ci left: 7.186202e-06	ci right 1.816958e-05	k: 20	n:1700000
Cons ci ratio: 1.771099e-03	ci left: 7.417178e-01	ci right 7.430332e-01	k: 1262039	n:1700000
KS ci ratio: 2.771856e+00	ci left: 1.489283e-08	ci right 3.277433e-06	k: 1	n:1700000
ZNF395   1700000 perm   1572 sec   (1082 perm/sec)   p_kst 5.882353e-07   p_cons 7.423759e-01   p_joint 1.176471e-05

Joint ci ratio: 8.554086e-01	ci left: 7.144178e-06	ci right 1.806332e-05	k: 20	n:1710000
Cons ci ratio: 1.765885e-03	ci left: 7.417257e-01	ci right 7.430372e-01	k: 1269473	n:1710000
KS ci ratio: 2.771856e+00	ci left: 1.480574e-08	ci right 3.258267e-06	k: 1	n:1710000
ZNF395   1710000 perm   1588 sec   (1077 perm/sec)   p_kst 5.847953e-07   p_cons 7.423819e-01   p_joint 1.169591e-05

Joint ci ratio: 8.554087e-01	ci left: 7.102642e-06	ci right 1.795830e-05	k: 20	n:1720000
Cons ci ratio: 1.760768e-03	ci left: 7.417225e-01	ci right 7.430302e-01	k: 1276888	n:1720000
KS ci ratio: 2.771856e+00	ci left: 1.471966e-08	ci right 3.239323e-06	k: 1	n:1720000
ZNF395   1720000 perm   1605 sec   (1072 perm/sec)   p_kst 5.813953e-07   p_cons 7.423767e-01   p_joint 1.162791e-05

Joint ci ratio: 8.554087e-01	ci left: 7.061586e-06	ci right 1.785450e-05	k: 20	n:1730000
Cons ci ratio: 1.755676e-03	ci left: 7.417234e-01	ci right 7.430273e-01	k: 1284310	n:1730000
KS ci ratio: 2.771856e+00	ci left: 1.463457e-08	ci right 3.220599e-06	k: 1	n:1730000
ZNF395   1730000 perm   1622 sec   (1067 perm/sec)   p_kst 5.780347e-07   p_cons 7.423757e-01   p_joint 1.156069e-05

Joint ci ratio: 9.239478e-01	ci left: 5.691462e-06	ci right 1.564285e-05	k: 17	n:1740000
Cons ci ratio: 1.800293e-03	ci left: 7.308707e-01	ci right 7.321883e-01	k: 1272862	n:1740000
KS ci ratio: 2.771856e+00	ci left: 1.455046e-08	ci right 3.202090e-06	k: 1	n:1740000
ZNF395   1740000 perm   1638 sec   (1062 perm/sec)   p_kst 5.747126e-07   p_cons 7.315299e-01   p_joint 9.770115e-06

Joint ci ratio: 9.239478e-01	ci left: 5.658939e-06	ci right 1.555347e-05	k: 17	n:1750000
Cons ci ratio: 1.795182e-03	ci left: 7.308639e-01	ci right 7.321776e-01	k: 1280162	n:1750000
KS ci ratio: 2.771856e+00	ci left: 1.446732e-08	ci right 3.183792e-06	k: 1	n:1750000
ZNF395   1750000 perm   1655 sec   (1057 perm/sec)   p_kst 5.714286e-07   p_cons 7.315211e-01   p_joint 9.714286e-06

Joint ci ratio: 9.239479e-01	ci left: 5.626786e-06	ci right 1.546510e-05	k: 17	n:1760000
Cons ci ratio: 1.790169e-03	ci left: 7.308452e-01	ci right 7.321552e-01	k: 1287441	n:1760000
KS ci ratio: 2.771856e+00	ci left: 1.438512e-08	ci right 3.165702e-06	k: 1	n:1760000
ZNF395   1760000 perm   1672 sec   (1052 perm/sec)   p_kst 5.681818e-07   p_cons 7.315006e-01   p_joint 9.659091e-06

Joint ci ratio: 9.239479e-01	ci left: 5.594996e-06	ci right 1.537772e-05	k: 17	n:1770000
Cons ci ratio: 1.785148e-03	ci left: 7.308374e-01	ci right 7.321438e-01	k: 1294739	n:1770000
KS ci ratio: 2.771856e+00	ci left: 1.430385e-08	ci right 3.147817e-06	k: 1	n:1770000
ZNF395   1770000 perm   1690 sec   (1048 perm/sec)   p_kst 5.649718e-07   p_cons 7.314910e-01   p_joint 9.604520e-06

Joint ci ratio: 8.993046e-01	ci left: 5.993236e-06	ci right 1.598184e-05	k: 18	n:1780000
Cons ci ratio: 1.780010e-03	ci left: 7.308652e-01	ci right 7.321678e-01	k: 1302100	n:1780000
KS ci ratio: 2.771856e+00	ci left: 1.422349e-08	ci right 3.130133e-06	k: 1	n:1780000
ZNF395   1780000 perm   1707 sec   (1043 perm/sec)   p_kst 5.617978e-07   p_cons 7.315169e-01   p_joint 1.011236e-05

Joint ci ratio: 8.993047e-01	ci left: 5.959754e-06	ci right 1.589256e-05	k: 18	n:1790000
Cons ci ratio: 1.775167e-03	ci left: 7.308367e-01	ci right 7.321357e-01	k: 1309361	n:1790000
KS ci ratio: 2.771856e+00	ci left: 1.414403e-08	ci right 3.112646e-06	k: 1	n:1790000
ZNF395   1790000 perm   1724 sec   (1038 perm/sec)   p_kst 5.586592e-07   p_cons 7.314866e-01   p_joint 1.005587e-05

Joint ci ratio: 8.993047e-01	ci left: 5.926644e-06	ci right 1.580427e-05	k: 18	n:1800000
Cons ci ratio: 1.769971e-03	ci left: 7.308958e-01	ci right 7.321912e-01	k: 1316779	n:1800000
KS ci ratio: 2.771856e+00	ci left: 1.406545e-08	ci right 3.095354e-06	k: 1	n:1800000
ZNF395   1800000 perm   1741 sec   (1034 perm/sec)   p_kst 5.555556e-07   p_cons 7.315439e-01   p_joint 1.000000e-05

Joint ci ratio: 1.012135e+00	ci left: 4.228697e-06	ci right 1.297766e-05	k: 14	n:1810000
Cons ci ratio: 1.764865e-03	ci left: 7.309444e-01	ci right 7.322361e-01	k: 1324179	n:1810000
KS ci ratio: 2.263211e+00	ci left: 1.338173e-07	ci right 3.991534e-06	k: 2	n:1810000
ZNF395   1810000 perm   1759 sec   (1029 perm/sec)   p_kst 1.104972e-06   p_cons 7.315906e-01   p_joint 7.734807e-06

Joint ci ratio: 1.012135e+00	ci left: 4.205462e-06	ci right 1.290635e-05	k: 14	n:1820000
Cons ci ratio: 1.760143e-03	ci left: 7.309165e-01	ci right 7.322047e-01	k: 1331441	n:1820000
KS ci ratio: 2.263211e+00	ci left: 1.330820e-07	ci right 3.969603e-06	k: 2	n:1820000
ZNF395   1820000 perm   1776 sec   (1025 perm/sec)   p_kst 1.098901e-06   p_cons 7.315610e-01   p_joint 7.692308e-06

Joint ci ratio: 1.012135e+00	ci left: 4.182482e-06	ci right 1.283583e-05	k: 14	n:1830000
Cons ci ratio: 1.755348e-03	ci left: 7.309136e-01	ci right 7.321982e-01	k: 1338748	n:1830000
KS ci ratio: 2.263211e+00	ci left: 1.323548e-07	ci right 3.947911e-06	k: 2	n:1830000
ZNF395   1830000 perm   1794 sec   (1020 perm/sec)   p_kst 1.092896e-06   p_cons 7.315563e-01   p_joint 7.650273e-06

Joint ci ratio: 1.012135e+00	ci left: 4.159751e-06	ci right 1.276607e-05	k: 14	n:1840000
Cons ci ratio: 1.750633e-03	ci left: 7.309014e-01	ci right 7.321826e-01	k: 1346038	n:1840000
KS ci ratio: 2.263211e+00	ci left: 1.316355e-07	ci right 3.926455e-06	k: 2	n:1840000
ZNF395   1840000 perm   1811 sec   (1016 perm/sec)   p_kst 1.086957e-06   p_cons 7.315424e-01   p_joint 7.608696e-06

Joint ci ratio: 9.799955e-01	ci left: 4.538053e-06	ci right 1.337306e-05	k: 15	n:1850000
Cons ci ratio: 1.745884e-03	ci left: 7.309056e-01	ci right 7.321834e-01	k: 1353358	n:1850000
KS ci ratio: 2.263211e+00	ci left: 1.309240e-07	ci right 3.905231e-06	k: 2	n:1850000
ZNF395   1850000 perm   1829 sec   (1011 perm/sec)   p_kst 1.081081e-06   p_cons 7.315449e-01   p_joint 8.108108e-06

Joint ci ratio: 9.799955e-01	ci left: 4.513655e-06	ci right 1.330116e-05	k: 15	n:1860000
Cons ci ratio: 1.740974e-03	ci left: 7.309550e-01	ci right 7.322292e-01	k: 1360762	n:1860000
KS ci ratio: 2.263211e+00	ci left: 1.302201e-07	ci right 3.884235e-06	k: 2	n:1860000
ZNF395   1860000 perm   1847 sec   (1007 perm/sec)   p_kst 1.075269e-06   p_cons 7.315925e-01   p_joint 8.064516e-06

Joint ci ratio: 9.799955e-01	ci left: 4.489518e-06	ci right 1.323003e-05	k: 15	n:1870000
Cons ci ratio: 1.736272e-03	ci left: 7.309659e-01	ci right 7.322366e-01	k: 1368095	n:1870000
KS ci ratio: 2.263211e+00	ci left: 1.295237e-07	ci right 3.863464e-06	k: 2	n:1870000
ZNF395   1870000 perm   1865 sec   (1003 perm/sec)   p_kst 1.069519e-06   p_cons 7.316016e-01   p_joint 8.021390e-06

Joint ci ratio: 9.799956e-01	ci left: 4.465638e-06	ci right 1.315966e-05	k: 15	n:1880000
Cons ci ratio: 1.731470e-03	ci left: 7.310080e-01	ci right 7.322753e-01	k: 1375487	n:1880000
KS ci ratio: 2.263211e+00	ci left: 1.288347e-07	ci right 3.842914e-06	k: 2	n:1880000
ZNF395   1880000 perm   1883 sec   (998 perm/sec)   p_kst 1.063830e-06   p_cons 7.316420e-01   p_joint 7.978723e-06

Joint ci ratio: 9.799956e-01	ci left: 4.442010e-06	ci right 1.309003e-05	k: 15	n:1890000
Cons ci ratio: 1.726850e-03	ci left: 7.310174e-01	ci right 7.322814e-01	k: 1382818	n:1890000
KS ci ratio: 2.263211e+00	ci left: 1.281531e-07	ci right 3.822581e-06	k: 2	n:1890000
ZNF395   1890000 perm   1901 sec   (994 perm/sec)   p_kst 1.058201e-06   p_cons 7.316497e-01   p_joint 7.936508e-06

Joint ci ratio: 9.799956e-01	ci left: 4.418631e-06	ci right 1.302113e-05	k: 15	n:1900000
Cons ci ratio: 1.722259e-03	ci left: 7.310283e-01	ci right 7.322889e-01	k: 1390152	n:1900000
KS ci ratio: 2.263211e+00	ci left: 1.274786e-07	ci right 3.802462e-06	k: 2	n:1900000
ZNF395   1900000 perm   1919 sec   (990 perm/sec)   p_kst 1.052632e-06   p_cons 7.316589e-01   p_joint 7.894737e-06

Joint ci ratio: 9.799956e-01	ci left: 4.395497e-06	ci right 1.295296e-05	k: 15	n:1910000
Cons ci ratio: 1.717613e-03	ci left: 7.310600e-01	ci right 7.323173e-01	k: 1397526	n:1910000
KS ci ratio: 2.263211e+00	ci left: 1.268112e-07	ci right 3.782554e-06	k: 2	n:1910000
ZNF395   1910000 perm   1937 sec   (986 perm/sec)   p_kst 1.047120e-06   p_cons 7.316890e-01   p_joint 7.853403e-06

Joint ci ratio: 9.799957e-01	ci left: 4.372603e-06	ci right 1.288550e-05	k: 15	n:1920000
Cons ci ratio: 1.713009e-03	ci left: 7.310904e-01	ci right 7.323443e-01	k: 1404898	n:1920000
KS ci ratio: 2.263211e+00	ci left: 1.261507e-07	ci right 3.762853e-06	k: 2	n:1920000
ZNF395   1920000 perm   1955 sec   (982 perm/sec)   p_kst 1.041667e-06   p_cons 7.317177e-01   p_joint 7.812500e-06

Joint ci ratio: 9.799957e-01	ci left: 4.349947e-06	ci right 1.281873e-05	k: 15	n:1930000
Cons ci ratio: 1.708559e-03	ci left: 7.310935e-01	ci right 7.323442e-01	k: 1412218	n:1930000
KS ci ratio: 2.263211e+00	ci left: 1.254971e-07	ci right 3.743356e-06	k: 2	n:1930000
ZNF395   1930000 perm   1974 sec   (978 perm/sec)   p_kst 1.036269e-06   p_cons 7.317192e-01   p_joint 7.772021e-06

Joint ci ratio: 9.799957e-01	ci left: 4.327525e-06	ci right 1.275266e-05	k: 15	n:1940000
Cons ci ratio: 1.704090e-03	ci left: 7.311089e-01	ci right 7.323564e-01	k: 1419562	n:1940000
KS ci ratio: 2.263211e+00	ci left: 1.248502e-07	ci right 3.724061e-06	k: 2	n:1940000
ZNF395   1940000 perm   1992 sec   (974 perm/sec)   p_kst 1.030928e-06   p_cons 7.317330e-01   p_joint 7.731959e-06

Joint ci ratio: 9.799957e-01	ci left: 4.305332e-06	ci right 1.268726e-05	k: 15	n:1950000
Cons ci ratio: 1.699895e-03	ci left: 7.310688e-01	ci right 7.323131e-01	k: 1426798	n:1950000
KS ci ratio: 2.263211e+00	ci left: 1.242099e-07	ci right 3.704963e-06	k: 2	n:1950000
ZNF395   1950000 perm   2011 sec   (970 perm/sec)   p_kst 1.025641e-06   p_cons 7.316913e-01   p_joint 7.692308e-06

Joint ci ratio: 9.799957e-01	ci left: 4.283366e-06	ci right 1.262253e-05	k: 15	n:1960000
Cons ci ratio: 1.695463e-03	ci left: 7.310914e-01	ci right 7.323324e-01	k: 1434156	n:1960000
KS ci ratio: 2.263211e+00	ci left: 1.235762e-07	ci right 3.686060e-06	k: 2	n:1960000
ZNF395   1960000 perm   2029 sec   (966 perm/sec)   p_kst 1.020408e-06   p_cons 7.317122e-01   p_joint 7.653061e-06

Joint ci ratio: 9.799958e-01	ci left: 4.261623e-06	ci right 1.255846e-05	k: 15	n:1970000
Cons ci ratio: 1.691076e-03	ci left: 7.311112e-01	ci right 7.323491e-01	k: 1441509	n:1970000
KS ci ratio: 2.263211e+00	ci left: 1.229489e-07	ci right 3.667349e-06	k: 2	n:1970000
ZNF395   1970000 perm   2048 sec   (962 perm/sec)   p_kst 1.015228e-06   p_cons 7.317305e-01   p_joint 7.614213e-06

Joint ci ratio: 9.799958e-01	ci left: 4.240100e-06	ci right 1.249503e-05	k: 15	n:1980000
Cons ci ratio: 1.686718e-03	ci left: 7.311318e-01	ci right 7.323665e-01	k: 1448864	n:1980000
KS ci ratio: 2.263211e+00	ci left: 1.223279e-07	ci right 3.648827e-06	k: 2	n:1980000
ZNF395   1980000 perm   2067 sec   (958 perm/sec)   p_kst 1.010101e-06   p_cons 7.317495e-01   p_joint 7.575758e-06

Joint ci ratio: 9.799958e-01	ci left: 4.218793e-06	ci right 1.243224e-05	k: 15	n:1990000
Cons ci ratio: 1.682355e-03	ci left: 7.311613e-01	ci right 7.323928e-01	k: 1456237	n:1990000
KS ci ratio: 2.263211e+00	ci left: 1.217132e-07	ci right 3.630492e-06	k: 2	n:1990000
ZNF395   1990000 perm   2085 sec   (954 perm/sec)   p_kst 1.005025e-06   p_cons 7.317774e-01   p_joint 7.537688e-06

Joint ci ratio: 9.799958e-01	ci left: 4.197699e-06	ci right 1.237008e-05	k: 15	n:2000000
Cons ci ratio: 1.678131e-03	ci left: 7.311659e-01	ci right 7.323944e-01	k: 1463561	n:2000000
KS ci ratio: 2.263211e+00	ci left: 1.211047e-07	ci right 3.612339e-06	k: 2	n:2000000
ZNF395   2000000 perm   2104 sec   (950 perm/sec)   p_kst 1.000000e-06   p_cons 7.317805e-01   p_joint 7.500000e-06

Joint ci ratio: 1.131603e+00	ci left: 2.731924e-06	ci right 9.792038e-06	k: 11	n:2010000
Cons ci ratio: 1.674091e-03	ci left: 7.311347e-01	ci right 7.323602e-01	k: 1470813	n:2010000
KS ci ratio: 2.263211e+00	ci left: 1.205022e-07	ci right 3.594367e-06	k: 2	n:2010000
ZNF395   2010000 perm   2123 sec   (947 perm/sec)   p_kst 9.950249e-07   p_cons 7.317478e-01   p_joint 5.472637e-06

Joint ci ratio: 1.131603e+00	ci left: 2.718399e-06	ci right 9.743562e-06	k: 11	n:2020000
Cons ci ratio: 1.669941e-03	ci left: 7.311365e-01	ci right 7.323589e-01	k: 1478131	n:2020000
KS ci ratio: 2.263211e+00	ci left: 1.199056e-07	ci right 3.576573e-06	k: 2	n:2020000
ZNF395   2020000 perm   2142 sec   (943 perm/sec)   p_kst 9.900990e-07   p_cons 7.317480e-01   p_joint 5.445545e-06

Joint ci ratio: 1.131603e+00	ci left: 2.705008e-06	ci right 9.695565e-06	k: 11	n:2030000
Cons ci ratio: 1.665759e-03	ci left: 7.311530e-01	ci right 7.323724e-01	k: 1485479	n:2030000
KS ci ratio: 2.263211e+00	ci left: 1.193149e-07	ci right 3.558955e-06	k: 2	n:2030000
ZNF395   2030000 perm   2161 sec   (939 perm/sec)   p_kst 9.852217e-07   p_cons 7.317631e-01   p_joint 5.418719e-06

Joint ci ratio: 1.131603e+00	ci left: 2.691748e-06	ci right 9.648038e-06	k: 11	n:2040000
Cons ci ratio: 1.661765e-03	ci left: 7.311321e-01	ci right 7.323486e-01	k: 1492751	n:2040000
KS ci ratio: 2.263211e+00	ci left: 1.187301e-07	ci right 3.541509e-06	k: 2	n:2040000
ZNF395   2040000 perm   2180 sec   (936 perm/sec)   p_kst 9.803922e-07   p_cons 7.317407e-01   p_joint 5.392157e-06

Joint ci ratio: 1.131603e+00	ci left: 2.678618e-06	ci right 9.600974e-06	k: 11	n:2050000
Cons ci ratio: 1.657677e-03	ci left: 7.311407e-01	ci right 7.323542e-01	k: 1500083	n:2050000
KS ci ratio: 2.263211e+00	ci left: 1.181509e-07	ci right 3.524233e-06	k: 2	n:2050000
ZNF395   2050000 perm   2200 sec   (932 perm/sec)   p_kst 9.756098e-07   p_cons 7.317478e-01   p_joint 5.365854e-06

Joint ci ratio: 1.131603e+00	ci left: 2.665615e-06	ci right 9.554367e-06	k: 11	n:2060000
Cons ci ratio: 1.653646e-03	ci left: 7.311430e-01	ci right 7.323535e-01	k: 1507402	n:2060000
KS ci ratio: 2.263211e+00	ci left: 1.175773e-07	ci right 3.507125e-06	k: 2	n:2060000
ZNF395   2060000 perm   2219 sec   (928 perm/sec)   p_kst 9.708738e-07   p_cons 7.317485e-01   p_joint 5.339806e-06

Joint ci ratio: 1.087209e+00	ci left: 2.995450e-06	ci right 1.012635e-05	k: 12	n:2070000
Cons ci ratio: 1.649640e-03	ci left: 7.311461e-01	ci right 7.323537e-01	k: 1514723	n:2070000
KS ci ratio: 2.263211e+00	ci left: 1.170093e-07	ci right 3.490183e-06	k: 2	n:2070000
ZNF395   2070000 perm   2239 sec   (925 perm/sec)   p_kst 9.661836e-07   p_cons 7.317502e-01   p_joint 5.797101e-06

Joint ci ratio: 1.087209e+00	ci left: 2.981049e-06	ci right 1.007766e-05	k: 12	n:2080000
Cons ci ratio: 1.645469e-03	ci left: 7.311954e-01	ci right 7.324001e-01	k: 1522140	n:2080000
KS ci ratio: 2.263211e+00	ci left: 1.164468e-07	ci right 3.473403e-06	k: 2	n:2080000
ZNF395   2080000 perm   2258 sec   (921 perm/sec)   p_kst 9.615385e-07   p_cons 7.317981e-01   p_joint 5.769231e-06

Joint ci ratio: 1.087209e+00	ci left: 2.966786e-06	ci right 1.002945e-05	k: 12	n:2090000
Cons ci ratio: 1.641604e-03	ci left: 7.311787e-01	ci right 7.323805e-01	k: 1529420	n:2090000
KS ci ratio: 2.263211e+00	ci left: 1.158896e-07	ci right 3.456784e-06	k: 2	n:2090000
ZNF395   2090000 perm   2278 sec   (918 perm/sec)   p_kst 9.569378e-07   p_cons 7.317799e-01   p_joint 5.741627e-06

Joint ci ratio: 1.047660e+00	ci left: 3.296172e-06	ci right 1.058588e-05	k: 13	n:2100000
Cons ci ratio: 1.637747e-03	ci left: 7.311664e-01	ci right 7.323653e-01	k: 1536709	n:2100000
KS ci ratio: 2.263211e+00	ci left: 1.153378e-07	ci right 3.440323e-06	k: 2	n:2100000
ZNF395   2100000 perm   2298 sec   (914 perm/sec)   p_kst 9.523810e-07   p_cons 7.317662e-01   p_joint 6.190476e-06

Joint ci ratio: 1.047660e+00	ci left: 3.280550e-06	ci right 1.053571e-05	k: 13	n:2110000
Cons ci ratio: 1.633903e-03	ci left: 7.311580e-01	ci right 7.323541e-01	k: 1544006	n:2110000
KS ci ratio: 2.263211e+00	ci left: 1.147911e-07	ci right 3.424018e-06	k: 2	n:2110000
ZNF395   2110000 perm   2318 sec   (910 perm/sec)   p_kst 9.478673e-07   p_cons 7.317564e-01   p_joint 6.161137e-06

Joint ci ratio: 1.047660e+00	ci left: 3.265076e-06	ci right 1.048601e-05	k: 13	n:2120000
Cons ci ratio: 1.630130e-03	ci left: 7.311389e-01	ci right 7.323322e-01	k: 1551280	n:2120000
KS ci ratio: 2.263211e+00	ci left: 1.142497e-07	ci right 3.407867e-06	k: 2	n:2120000
ZNF395   2120000 perm   2338 sec   (907 perm/sec)   p_kst 9.433962e-07   p_cons 7.317358e-01   p_joint 6.132075e-06

Joint ci ratio: 1.047660e+00	ci left: 3.249747e-06	ci right 1.043678e-05	k: 13	n:2130000
Cons ci ratio: 1.626325e-03	ci left: 7.311340e-01	ci right 7.323245e-01	k: 1558584	n:2130000
KS ci ratio: 2.263211e+00	ci left: 1.137133e-07	ci right 3.391868e-06	k: 2	n:2130000
ZNF395   2130000 perm   2358 sec   (903 perm/sec)   p_kst 9.389671e-07   p_cons 7.317296e-01   p_joint 6.103286e-06

Joint ci ratio: 1.047660e+00	ci left: 3.234561e-06	ci right 1.038801e-05	k: 13	n:2140000
Cons ci ratio: 1.622566e-03	ci left: 7.311245e-01	ci right 7.323122e-01	k: 1565878	n:2140000
KS ci ratio: 2.263211e+00	ci left: 1.131819e-07	ci right 3.376018e-06	k: 2	n:2140000
ZNF395   2140000 perm   2378 sec   (900 perm/sec)   p_kst 9.345794e-07   p_cons 7.317187e-01   p_joint 6.074766e-06

Joint ci ratio: 1.047660e+00	ci left: 3.219517e-06	ci right 1.033970e-05	k: 13	n:2150000
Cons ci ratio: 1.618702e-03	ci left: 7.311468e-01	ci right 7.323317e-01	k: 1573240	n:2150000
KS ci ratio: 2.263211e+00	ci left: 1.126555e-07	ci right 3.360316e-06	k: 2	n:2150000
ZNF395   2150000 perm   2399 sec   (896 perm/sec)   p_kst 9.302326e-07   p_cons 7.317395e-01   p_joint 6.046512e-06

Joint ci ratio: 1.047660e+00	ci left: 3.204611e-06	ci right 1.029183e-05	k: 13	n:2160000
Cons ci ratio: 1.614991e-03	ci left: 7.311382e-01	ci right 7.323204e-01	k: 1580536	n:2160000
KS ci ratio: 2.263211e+00	ci left: 1.121339e-07	ci right 3.344759e-06	k: 2	n:2160000
ZNF395   2160000 perm   2419 sec   (893 perm/sec)   p_kst 9.259259e-07   p_cons 7.317296e-01   p_joint 6.018519e-06

Joint ci ratio: 1.047660e+00	ci left: 3.189844e-06	ci right 1.024440e-05	k: 13	n:2170000
Cons ci ratio: 1.611145e-03	ci left: 7.311690e-01	ci right 7.323484e-01	k: 1587917	n:2170000
KS ci ratio: 2.263211e+00	ci left: 1.116172e-07	ci right 3.329345e-06	k: 2	n:2170000
ZNF395   2170000 perm   2439 sec   (890 perm/sec)   p_kst 9.216590e-07   p_cons 7.317590e-01   p_joint 5.990783e-06

Joint ci ratio: 1.047660e+00	ci left: 3.175211e-06	ci right 1.019741e-05	k: 13	n:2180000
Cons ci ratio: 1.607270e-03	ci left: 7.312132e-01	ci right 7.323898e-01	k: 1595328	n:2180000
KS ci ratio: 2.263211e+00	ci left: 1.111052e-07	ci right 3.314073e-06	k: 2	n:2180000
ZNF395   2180000 perm   2459 sec   (886 perm/sec)   p_kst 9.174312e-07   p_cons 7.318018e-01   p_joint 5.963303e-06

Joint ci ratio: 1.047660e+00	ci left: 3.160713e-06	ci right 1.015084e-05	k: 13	n:2190000
Cons ci ratio: 1.603490e-03	ci left: 7.312406e-01	ci right 7.324145e-01	k: 1602703	n:2190000
KS ci ratio: 2.263211e+00	ci left: 1.105979e-07	ci right 3.298940e-06	k: 2	n:2190000
ZNF395   2190000 perm   2480 sec   (883 perm/sec)   p_kst 9.132420e-07   p_cons 7.318279e-01   p_joint 5.936073e-06

Joint ci ratio: 1.047660e+00	ci left: 3.146346e-06	ci right 1.010470e-05	k: 13	n:2200000
Cons ci ratio: 1.599896e-03	ci left: 7.312286e-01	ci right 7.323999e-01	k: 1609992	n:2200000
KS ci ratio: 2.263211e+00	ci left: 1.100951e-07	ci right 3.283945e-06	k: 2	n:2200000
ZNF395   2200000 perm   2501 sec   (880 perm/sec)   p_kst 9.090909e-07   p_cons 7.318145e-01   p_joint 5.909091e-06

Joint ci ratio: 1.047661e+00	ci left: 3.132109e-06	ci right 1.005898e-05	k: 13	n:2210000
Cons ci ratio: 1.596322e-03	ci left: 7.312176e-01	ci right 7.323863e-01	k: 1617283	n:2210000
KS ci ratio: 2.263211e+00	ci left: 1.095970e-07	ci right 3.269086e-06	k: 2	n:2210000
ZNF395   2210000 perm   2522 sec   (876 perm/sec)   p_kst 9.049774e-07   p_cons 7.318023e-01   p_joint 5.882353e-06

Joint ci ratio: 1.047661e+00	ci left: 3.118000e-06	ci right 1.001367e-05	k: 13	n:2220000
Cons ci ratio: 1.592778e-03	ci left: 7.312054e-01	ci right 7.323714e-01	k: 1624571	n:2220000
KS ci ratio: 2.263211e+00	ci left: 1.091033e-07	ci right 3.254360e-06	k: 2	n:2220000
ZNF395   2220000 perm   2543 sec   (873 perm/sec)   p_kst 9.009009e-07   p_cons 7.317887e-01   p_joint 5.855856e-06

Joint ci ratio: 1.047661e+00	ci left: 3.104018e-06	ci right 9.968767e-06	k: 13	n:2230000
Cons ci ratio: 1.589211e-03	ci left: 7.312046e-01	ci right 7.323679e-01	k: 1631884	n:2230000
KS ci ratio: 2.263211e+00	ci left: 1.086140e-07	ci right 3.239766e-06	k: 2	n:2230000
ZNF395   2230000 perm   2564 sec   (870 perm/sec)   p_kst 8.968610e-07   p_cons 7.317865e-01   p_joint 5.829596e-06

Joint ci ratio: 1.047661e+00	ci left: 3.090161e-06	ci right 9.924263e-06	k: 13	n:2240000
Cons ci ratio: 1.585772e-03	ci left: 7.311782e-01	ci right 7.323390e-01	k: 1639140	n:2240000
KS ci ratio: 2.263211e+00	ci left: 1.081292e-07	ci right 3.225303e-06	k: 2	n:2240000
ZNF395   2240000 perm   2585 sec   (867 perm/sec)   p_kst 8.928571e-07   p_cons 7.317589e-01   p_joint 5.803571e-06

Joint ci ratio: 1.047661e+00	ci left: 3.076427e-06	ci right 9.880156e-06	k: 13	n:2250000
Cons ci ratio: 1.582290e-03	ci left: 7.311681e-01	ci right 7.323264e-01	k: 1646432	n:2250000
KS ci ratio: 2.263211e+00	ci left: 1.076486e-07	ci right 3.210969e-06	k: 2	n:2250000
ZNF395   2250000 perm   2606 sec   (863 perm/sec)   p_kst 8.888889e-07   p_cons 7.317476e-01   p_joint 5.777778e-06

Joint ci ratio: 1.047661e+00	ci left: 3.062814e-06	ci right 9.836438e-06	k: 13	n:2260000
Cons ci ratio: 1.578903e-03	ci left: 7.311400e-01	ci right 7.322957e-01	k: 1653683	n:2260000
KS ci ratio: 2.263211e+00	ci left: 1.071723e-07	ci right 3.196761e-06	k: 2	n:2260000
ZNF395   2260000 perm   2627 sec   (860 perm/sec)   p_kst 8.849558e-07   p_cons 7.317181e-01   p_joint 5.752212e-06

Joint ci ratio: 1.047661e+00	ci left: 3.049322e-06	ci right 9.793106e-06	k: 13	n:2270000
Cons ci ratio: 1.575470e-03	ci left: 7.311293e-01	ci right 7.322825e-01	k: 1660973	n:2270000
KS ci ratio: 2.263211e+00	ci left: 1.067001e-07	ci right 3.182678e-06	k: 2	n:2270000
ZNF395   2270000 perm   2648 sec   (857 perm/sec)   p_kst 8.810573e-07   p_cons 7.317062e-01   p_joint 5.726872e-06

Joint ci ratio: 1.047661e+00	ci left: 3.035947e-06	ci right 9.750154e-06	k: 13	n:2280000
Cons ci ratio: 1.571937e-03	ci left: 7.311489e-01	ci right 7.322996e-01	k: 1668332	n:2280000
KS ci ratio: 2.263211e+00	ci left: 1.062322e-07	ci right 3.168719e-06	k: 2	n:2280000
ZNF395   2280000 perm   2670 sec   (854 perm/sec)   p_kst 8.771930e-07   p_cons 7.317246e-01   p_joint 5.701754e-06

Joint ci ratio: 1.047661e+00	ci left: 3.022690e-06	ci right 9.707577e-06	k: 13	n:2290000
Cons ci ratio: 1.568535e-03	ci left: 7.311418e-01	ci right 7.322899e-01	k: 1675630	n:2290000
KS ci ratio: 2.263211e+00	ci left: 1.057683e-07	ci right 3.154882e-06	k: 2	n:2290000
ZNF395   2290000 perm   2691 sec   (851 perm/sec)   p_kst 8.733624e-07   p_cons 7.317162e-01   p_joint 5.676856e-06

Joint ci ratio: 1.047661e+00	ci left: 3.009548e-06	ci right 9.665370e-06	k: 13	n:2300000
Cons ci ratio: 1.565153e-03	ci left: 7.311351e-01	ci right 7.322808e-01	k: 1682929	n:2300000
KS ci ratio: 2.263211e+00	ci left: 1.053084e-07	ci right 3.141165e-06	k: 2	n:2300000
ZNF395   2300000 perm   2713 sec   (848 perm/sec)   p_kst 8.695652e-07   p_cons 7.317083e-01   p_joint 5.652174e-06

Joint ci ratio: 1.047661e+00	ci left: 2.996520e-06	ci right 9.623529e-06	k: 13	n:2310000
Cons ci ratio: 1.561712e-03	ci left: 7.311489e-01	ci right 7.322921e-01	k: 1690275	n:2310000
KS ci ratio: 2.263211e+00	ci left: 1.048525e-07	ci right 3.127567e-06	k: 2	n:2310000
ZNF395   2310000 perm   2735 sec   (845 perm/sec)   p_kst 8.658009e-07   p_cons 7.317208e-01   p_joint 5.627706e-06

Joint ci ratio: 1.047661e+00	ci left: 2.983603e-06	ci right 9.582048e-06	k: 13	n:2320000
Cons ci ratio: 1.558373e-03	ci left: 7.311423e-01	ci right 7.322830e-01	k: 1697574	n:2320000
KS ci ratio: 2.263211e+00	ci left: 1.044006e-07	ci right 3.114086e-06	k: 2	n:2320000
ZNF395   2320000 perm   2756 sec   (842 perm/sec)   p_kst 8.620690e-07   p_cons 7.317129e-01   p_joint 5.603448e-06

Joint ci ratio: 1.047661e+00	ci left: 2.970798e-06	ci right 9.540924e-06	k: 13	n:2330000
Cons ci ratio: 1.555073e-03	ci left: 7.311314e-01	ci right 7.322697e-01	k: 1704863	n:2330000
KS ci ratio: 2.263211e+00	ci left: 1.039525e-07	ci right 3.100721e-06	k: 2	n:2330000
ZNF395   2330000 perm   2778 sec   (839 perm/sec)   p_kst 8.583691e-07   p_cons 7.317009e-01   p_joint 5.579399e-06

Joint ci ratio: 1.047661e+00	ci left: 2.958103e-06	ci right 9.500150e-06	k: 13	n:2340000
Cons ci ratio: 1.551826e-03	ci left: 7.311126e-01	ci right 7.322484e-01	k: 1712133	n:2340000
KS ci ratio: 2.263211e+00	ci left: 1.035083e-07	ci right 3.087470e-06	k: 2	n:2340000
ZNF395   2340000 perm   2801 sec   (836 perm/sec)   p_kst 8.547009e-07   p_cons 7.316808e-01   p_joint 5.555556e-06

Joint ci ratio: 1.047661e+00	ci left: 2.945515e-06	ci right 9.459724e-06	k: 13	n:2350000
Cons ci ratio: 1.548471e-03	ci left: 7.311266e-01	ci right 7.322600e-01	k: 1719480	n:2350000
KS ci ratio: 2.263211e+00	ci left: 1.030678e-07	ci right 3.074332e-06	k: 2	n:2350000
ZNF395   2350000 perm   2823 sec   (833 perm/sec)   p_kst 8.510638e-07   p_cons 7.316936e-01   p_joint 5.531915e-06

Joint ci ratio: 1.047661e+00	ci left: 2.933034e-06	ci right 9.419641e-06	k: 13	n:2360000
Cons ci ratio: 1.545155e-03	ci left: 7.311359e-01	ci right 7.322669e-01	k: 1726816	n:2360000
KS ci ratio: 2.263211e+00	ci left: 1.026311e-07	ci right 3.061305e-06	k: 2	n:2360000
ZNF395   2360000 perm   2845 sec   (830 perm/sec)   p_kst 8.474576e-07   p_cons 7.317017e-01   p_joint 5.508475e-06

Joint ci ratio: 1.047661e+00	ci left: 2.920658e-06	ci right 9.379896e-06	k: 13	n:2370000
Cons ci ratio: 1.541905e-03	ci left: 7.311337e-01	ci right 7.322623e-01	k: 1734125	n:2370000
KS ci ratio: 2.263211e+00	ci left: 1.021980e-07	ci right 3.048388e-06	k: 2	n:2370000
ZNF395   2370000 perm   2867 sec   (827 perm/sec)   p_kst 8.438819e-07   p_cons 7.316983e-01   p_joint 5.485232e-06

Joint ci ratio: 1.047661e+00	ci left: 2.908387e-06	ci right 9.340484e-06	k: 13	n:2380000
Cons ci ratio: 1.538515e-03	ci left: 7.311723e-01	ci right 7.322985e-01	k: 1741531	n:2380000
KS ci ratio: 2.263211e+00	ci left: 1.017686e-07	ci right 3.035580e-06	k: 2	n:2380000
ZNF395   2380000 perm   2890 sec   (824 perm/sec)   p_kst 8.403361e-07   p_cons 7.317357e-01   p_joint 5.462185e-06

Joint ci ratio: 1.047661e+00	ci left: 2.896218e-06	ci right 9.301403e-06	k: 13	n:2390000
Cons ci ratio: 1.535320e-03	ci left: 7.311667e-01	ci right 7.322905e-01	k: 1748832	n:2390000
KS ci ratio: 2.263211e+00	ci left: 1.013428e-07	ci right 3.022879e-06	k: 2	n:2390000
ZNF395   2390000 perm   2913 sec   (821 perm/sec)   p_kst 8.368201e-07   p_cons 7.317289e-01   p_joint 5.439331e-06

Joint ci ratio: 1.047661e+00	ci left: 2.884150e-06	ci right 9.262647e-06	k: 13	n:2400000
Cons ci ratio: 1.532111e-03	ci left: 7.311698e-01	ci right 7.322913e-01	k: 1756154	n:2400000
KS ci ratio: 2.263211e+00	ci left: 1.009205e-07	ci right 3.010283e-06	k: 2	n:2400000
ZNF395   2400000 perm   2935 sec   (818 perm/sec)   p_kst 8.333333e-07   p_cons 7.317308e-01   p_joint 5.416667e-06

Joint ci ratio: 1.047661e+00	ci left: 2.872182e-06	ci right 9.224213e-06	k: 13	n:2410000
Cons ci ratio: 1.528973e-03	ci left: 7.311596e-01	ci right 7.322788e-01	k: 1763444	n:2410000
KS ci ratio: 2.263211e+00	ci left: 1.005018e-07	ci right 2.997792e-06	k: 2	n:2410000
ZNF395   2410000 perm   2958 sec   (815 perm/sec)   p_kst 8.298755e-07   p_cons 7.317195e-01   p_joint 5.394191e-06

Joint ci ratio: 1.047661e+00	ci left: 2.860314e-06	ci right 9.186096e-06	k: 13	n:2420000
Cons ci ratio: 1.525734e-03	ci left: 7.311806e-01	ci right 7.322974e-01	k: 1770809	n:2420000
KS ci ratio: 2.263211e+00	ci left: 1.000865e-07	ci right 2.985405e-06	k: 2	n:2420000
ZNF395   2420000 perm   2980 sec   (812 perm/sec)   p_kst 8.264463e-07   p_cons 7.317393e-01   p_joint 5.371901e-06

Joint ci ratio: 1.047661e+00	ci left: 2.848543e-06	ci right 9.148294e-06	k: 13	n:2430000
Cons ci ratio: 1.522590e-03	ci left: 7.311820e-01	ci right 7.322965e-01	k: 1778127	n:2430000
KS ci ratio: 2.263211e+00	ci left: 9.967462e-08	ci right 2.973119e-06	k: 2	n:2430000
ZNF395   2430000 perm   3003 sec   (809 perm/sec)   p_kst 8.230453e-07   p_cons 7.317395e-01   p_joint 5.349794e-06

Joint ci ratio: 1.047661e+00	ci left: 2.836869e-06	ci right 9.110801e-06	k: 13	n:2440000
Cons ci ratio: 1.519456e-03	ci left: 7.311858e-01	ci right 7.322981e-01	k: 1785451	n:2440000
KS ci ratio: 2.263211e+00	ci left: 9.926611e-08	ci right 2.960934e-06	k: 2	n:2440000
ZNF395   2440000 perm   3026 sec   (806 perm/sec)   p_kst 8.196721e-07   p_cons 7.317422e-01   p_joint 5.327869e-06

Joint ci ratio: 1.047661e+00	ci left: 2.825290e-06	ci right 9.073614e-06	k: 13	n:2450000
Cons ci ratio: 1.516365e-03	ci left: 7.311835e-01	ci right 7.322935e-01	k: 1792760	n:2450000
KS ci ratio: 2.263211e+00	ci left: 9.886095e-08	ci right 2.948849e-06	k: 2	n:2450000
ZNF395   2450000 perm   3049 sec   (804 perm/sec)   p_kst 8.163265e-07   p_cons 7.317388e-01   p_joint 5.306122e-06

Joint ci ratio: 1.047661e+00	ci left: 2.813805e-06	ci right 9.036729e-06	k: 13	n:2460000
Cons ci ratio: 1.513378e-03	ci left: 7.311593e-01	ci right 7.322670e-01	k: 1800015	n:2460000
KS ci ratio: 2.263211e+00	ci left: 9.845907e-08	ci right 2.936862e-06	k: 2	n:2460000
ZNF395   2460000 perm   3072 sec   (801 perm/sec)   p_kst 8.130081e-07   p_cons 7.317134e-01   p_joint 5.284553e-06

Joint ci ratio: 1.047661e+00	ci left: 2.802413e-06	ci right 9.000143e-06	k: 13	n:2470000
Cons ci ratio: 1.510358e-03	ci left: 7.311482e-01	ci right 7.322537e-01	k: 1807302	n:2470000
KS ci ratio: 2.263211e+00	ci left: 9.806045e-08	ci right 2.924972e-06	k: 2	n:2470000
ZNF395   2470000 perm   3095 sec   (798 perm/sec)   p_kst 8.097166e-07   p_cons 7.317012e-01   p_joint 5.263158e-06

Joint ci ratio: 1.047661e+00	ci left: 2.791113e-06	ci right 8.963853e-06	k: 13	n:2480000
Cons ci ratio: 1.507426e-03	ci left: 7.311190e-01	ci right 7.322224e-01	k: 1814544	n:2480000
KS ci ratio: 2.263211e+00	ci left: 9.766505e-08	ci right 2.913177e-06	k: 2	n:2480000
ZNF395   2480000 perm   3118 sec   (795 perm/sec)   p_kst 8.064516e-07   p_cons 7.316710e-01   p_joint 5.241935e-06

Joint ci ratio: 1.047661e+00	ci left: 2.779903e-06	ci right 8.927853e-06	k: 13	n:2490000
Cons ci ratio: 1.504528e-03	ci left: 7.310857e-01	ci right 7.321869e-01	k: 1821775	n:2490000
KS ci ratio: 2.263211e+00	ci left: 9.727282e-08	ci right 2.901478e-06	k: 2	n:2490000
ZNF395   2490000 perm   3141 sec   (793 perm/sec)   p_kst 8.032129e-07   p_cons 7.316365e-01   p_joint 5.220884e-06

Joint ci ratio: 1.047661e+00	ci left: 2.768784e-06	ci right 8.892142e-06	k: 13	n:2500000
Cons ci ratio: 1.501621e-03	ci left: 7.310594e-01	ci right 7.321584e-01	k: 1829023	n:2500000
KS ci ratio: 2.263211e+00	ci left: 9.688373e-08	ci right 2.889872e-06	k: 2	n:2500000
ZNF395   2500000 perm   3164 sec   (790 perm/sec)   p_kst 8.000000e-07   p_cons 7.316092e-01   p_joint 5.200000e-06

Joint ci ratio: 1.047661e+00	ci left: 2.757753e-06	ci right 8.856715e-06	k: 13	n:2510000
Cons ci ratio: 1.498665e-03	ci left: 7.310505e-01	ci right 7.321473e-01	k: 1836314	n:2510000
KS ci ratio: 2.263211e+00	ci left: 9.649774e-08	ci right 2.878359e-06	k: 2	n:2510000
ZNF395   2510000 perm   3188 sec   (787 perm/sec)   p_kst 7.968127e-07   p_cons 7.315992e-01   p_joint 5.179283e-06

Joint ci ratio: 1.047661e+00	ci left: 2.746809e-06	ci right 8.821570e-06	k: 13	n:2520000
Cons ci ratio: 1.495749e-03	ci left: 7.310357e-01	ci right 7.321304e-01	k: 1843590	n:2520000
KS ci ratio: 2.263211e+00	ci left: 9.611481e-08	ci right 2.866937e-06	k: 2	n:2520000
ZNF395   2520000 perm   3211 sec   (785 perm/sec)   p_kst 7.936508e-07   p_cons 7.315833e-01   p_joint 5.158730e-06

Joint ci ratio: 1.047661e+00	ci left: 2.735952e-06	ci right 8.786702e-06	k: 13	n:2530000
Cons ci ratio: 1.492773e-03	ci left: 7.310412e-01	ci right 7.321337e-01	k: 1850917	n:2530000
KS ci ratio: 2.263211e+00	ci left: 9.573491e-08	ci right 2.855605e-06	k: 2	n:2530000
ZNF395   2530000 perm   3235 sec   (782 perm/sec)   p_kst 7.905138e-07   p_cons 7.315877e-01   p_joint 5.138340e-06

Joint ci ratio: 1.047661e+00	ci left: 2.725181e-06	ci right 8.752108e-06	k: 13	n:2540000
Cons ci ratio: 1.489809e-03	ci left: 7.310483e-01	ci right 7.321386e-01	k: 1858248	n:2540000
KS ci ratio: 2.263211e+00	ci left: 9.535800e-08	ci right 2.844362e-06	k: 2	n:2540000
ZNF395   2540000 perm   3259 sec   (779 perm/sec)   p_kst 7.874016e-07   p_cons 7.315937e-01   p_joint 5.118110e-06

Joint ci ratio: 1.047661e+00	ci left: 2.714494e-06	ci right 8.717787e-06	k: 13	n:2550000
Cons ci ratio: 1.487009e-03	ci left: 7.310164e-01	ci right 7.321046e-01	k: 1865480	n:2550000
KS ci ratio: 2.263211e+00	ci left: 9.498405e-08	ci right 2.833208e-06	k: 2	n:2550000
ZNF395   2550000 perm   3282 sec   (777 perm/sec)   p_kst 7.843137e-07   p_cons 7.315608e-01   p_joint 5.098039e-06

Joint ci ratio: 1.047661e+00	ci left: 2.703890e-06	ci right 8.683733e-06	k: 13	n:2560000
Cons ci ratio: 1.484001e-03	ci left: 7.310442e-01	ci right 7.321303e-01	k: 1872864	n:2560000
KS ci ratio: 2.263211e+00	ci left: 9.461301e-08	ci right 2.822141e-06	k: 2	n:2560000
ZNF395   2560000 perm   3306 sec   (774 perm/sec)   p_kst 7.812500e-07   p_cons 7.315875e-01   p_joint 5.078125e-06

Joint ci ratio: 1.047661e+00	ci left: 2.693369e-06	ci right 8.649944e-06	k: 13	n:2570000
Cons ci ratio: 1.481019e-03	ci left: 7.310699e-01	ci right 7.321538e-01	k: 1880243	n:2570000
KS ci ratio: 2.263211e+00	ci left: 9.424487e-08	ci right 2.811160e-06	k: 2	n:2570000
ZNF395   2570000 perm   3330 sec   (772 perm/sec)   p_kst 7.782101e-07   p_cons 7.316121e-01   p_joint 5.058366e-06

Joint ci ratio: 1.047661e+00	ci left: 2.682930e-06	ci right 8.616417e-06	k: 13	n:2580000
Cons ci ratio: 1.478246e-03	ci left: 7.310441e-01	ci right 7.321259e-01	k: 1887490	n:2580000
KS ci ratio: 2.263211e+00	ci left: 9.387958e-08	ci right 2.800264e-06	k: 2	n:2580000
ZNF395   2580000 perm   3355 sec   (769 perm/sec)   p_kst 7.751938e-07   p_cons 7.315853e-01   p_joint 5.038760e-06

Joint ci ratio: 1.047661e+00	ci left: 2.672571e-06	ci right 8.583149e-06	k: 13	n:2590000
Cons ci ratio: 1.475396e-03	ci left: 7.310437e-01	ci right 7.321234e-01	k: 1894802	n:2590000
KS ci ratio: 2.263211e+00	ci left: 9.351711e-08	ci right 2.789452e-06	k: 2	n:2590000
ZNF395   2590000 perm   3379 sec   (767 perm/sec)   p_kst 7.722008e-07   p_cons 7.315838e-01   p_joint 5.019305e-06

Joint ci ratio: 1.047661e+00	ci left: 2.662292e-06	ci right 8.550137e-06	k: 13	n:2600000
Cons ci ratio: 1.472502e-03	ci left: 7.310590e-01	ci right 7.321366e-01	k: 1902155	n:2600000
KS ci ratio: 2.263211e+00	ci left: 9.315743e-08	ci right 2.778723e-06	k: 2	n:2600000
ZNF395   2600000 perm   3402 sec   (764 perm/sec)   p_kst 7.692308e-07   p_cons 7.315981e-01   p_joint 5.000000e-06

Joint ci ratio: 1.047661e+00	ci left: 2.652092e-06	ci right 8.517378e-06	k: 13	n:2610000
Cons ci ratio: 1.469602e-03	ci left: 7.310804e-01	ci right 7.321559e-01	k: 1909524	n:2610000
KS ci ratio: 2.263211e+00	ci left: 9.280050e-08	ci right 2.768077e-06	k: 2	n:2610000
ZNF395   2610000 perm   3427 sec   (762 perm/sec)   p_kst 7.662835e-07   p_cons 7.316184e-01   p_joint 4.980843e-06

Joint ci ratio: 1.047661e+00	ci left: 2.641969e-06	ci right 8.484869e-06	k: 13	n:2620000
Cons ci ratio: 1.466867e-03	ci left: 7.310622e-01	ci right 7.321357e-01	k: 1916790	n:2620000
KS ci ratio: 2.263211e+00	ci left: 9.244630e-08	ci right 2.757512e-06	k: 2	n:2620000
ZNF395   2620000 perm   3450 sec   (759 perm/sec)   p_kst 7.633588e-07   p_cons 7.315992e-01   p_joint 4.961832e-06

Joint ci ratio: 1.047661e+00	ci left: 2.631924e-06	ci right 8.452607e-06	k: 13	n:2630000
Cons ci ratio: 1.463966e-03	ci left: 7.310925e-01	ci right 7.321640e-01	k: 1924183	n:2630000
KS ci ratio: 2.263211e+00	ci left: 9.209480e-08	ci right 2.747027e-06	k: 2	n:2630000
ZNF395   2630000 perm   3475 sec   (757 perm/sec)   p_kst 7.604563e-07   p_cons 7.316285e-01   p_joint 4.942966e-06

Joint ci ratio: 1.047661e+00	ci left: 2.621954e-06	ci right 8.420590e-06	k: 13	n:2640000
Cons ci ratio: 1.461194e-03	ci left: 7.310927e-01	ci right 7.321621e-01	k: 1931497	n:2640000
KS ci ratio: 2.263211e+00	ci left: 9.174595e-08	ci right 2.736621e-06	k: 2	n:2640000
ZNF395   2640000 perm   3499 sec   (755 perm/sec)   p_kst 7.575758e-07   p_cons 7.316277e-01   p_joint 4.924242e-06

Joint ci ratio: 1.012137e+00	ci left: 2.888278e-06	ci right 8.863992e-06	k: 14	n:2650000
Cons ci ratio: 1.458379e-03	ci left: 7.311087e-01	ci right 7.321761e-01	k: 1938853	n:2650000
KS ci ratio: 2.263211e+00	ci left: 9.139974e-08	ci right 2.726295e-06	k: 2	n:2650000
ZNF395   2650000 perm   3523 sec   (752 perm/sec)   p_kst 7.547170e-07   p_cons 7.316426e-01   p_joint 5.283019e-06

Joint ci ratio: 1.012137e+00	ci left: 2.877420e-06	ci right 8.830669e-06	k: 14	n:2660000
Cons ci ratio: 1.455608e-03	ci left: 7.311171e-01	ci right 7.321824e-01	k: 1946189	n:2660000
KS ci ratio: 2.263211e+00	ci left: 9.105613e-08	ci right 2.716045e-06	k: 2	n:2660000
ZNF395   2660000 perm   3547 sec   (750 perm/sec)   p_kst 7.518797e-07   p_cons 7.316500e-01   p_joint 5.263158e-06

Joint ci ratio: 1.012137e+00	ci left: 2.866643e-06	ci right 8.797595e-06	k: 14	n:2670000
Cons ci ratio: 1.452860e-03	ci left: 7.311231e-01	ci right 7.321865e-01	k: 1953519	n:2670000
KS ci ratio: 2.263211e+00	ci left: 9.071510e-08	ci right 2.705873e-06	k: 2	n:2670000
ZNF395   2670000 perm   3572 sec   (748 perm/sec)   p_kst 7.490637e-07   p_cons 7.316551e-01   p_joint 5.243446e-06

Joint ci ratio: 1.012137e+00	ci left: 2.855947e-06	ci right 8.764768e-06	k: 14	n:2680000
Cons ci ratio: 1.450293e-03	ci left: 7.310847e-01	ci right 7.321461e-01	k: 1960730	n:2680000
KS ci ratio: 2.263211e+00	ci left: 9.037661e-08	ci right 2.695776e-06	k: 2	n:2680000
ZNF395   2680000 perm   3596 sec   (745 perm/sec)   p_kst 7.462687e-07   p_cons 7.316157e-01   p_joint 5.223881e-06

Joint ci ratio: 1.012137e+00	ci left: 2.845330e-06	ci right 8.732186e-06	k: 14	n:2690000
Cons ci ratio: 1.447688e-03	ci left: 7.310604e-01	ci right 7.321198e-01	k: 1967978	n:2690000
KS ci ratio: 2.263211e+00	ci left: 9.004064e-08	ci right 2.685755e-06	k: 2	n:2690000
ZNF395   2690000 perm   3621 sec   (743 perm/sec)   p_kst 7.434944e-07   p_cons 7.315903e-01   p_joint 5.204461e-06

Joint ci ratio: 1.012137e+00	ci left: 2.834792e-06	ci right 8.699844e-06	k: 14	n:2700000
Cons ci ratio: 1.444985e-03	ci left: 7.310666e-01	ci right 7.321241e-01	k: 1975308	n:2700000
KS ci ratio: 2.263211e+00	ci left: 8.970715e-08	ci right 2.675808e-06	k: 2	n:2700000
ZNF395   2700000 perm   3646 sec   (741 perm/sec)   p_kst 7.407407e-07   p_cons 7.315956e-01   p_joint 5.185185e-06

Joint ci ratio: 1.012137e+00	ci left: 2.824331e-06	ci right 8.667742e-06	k: 14	n:2710000
Cons ci ratio: 1.442479e-03	ci left: 7.310232e-01	ci right 7.320788e-01	k: 1982504	n:2710000
KS ci ratio: 2.263211e+00	ci left: 8.937613e-08	ci right 2.665934e-06	k: 2	n:2710000
ZNF395   2710000 perm   3671 sec   (738 perm/sec)   p_kst 7.380074e-07   p_cons 7.315513e-01   p_joint 5.166052e-06

Joint ci ratio: 1.012137e+00	ci left: 2.813948e-06	ci right 8.635875e-06	k: 14	n:2720000
Cons ci ratio: 1.439864e-03	ci left: 7.310137e-01	ci right 7.320674e-01	k: 1989791	n:2720000
KS ci ratio: 2.263211e+00	ci left: 8.904754e-08	ci right 2.656133e-06	k: 2	n:2720000
ZNF395   2720000 perm   3697 sec   (736 perm/sec)   p_kst 7.352941e-07   p_cons 7.315408e-01   p_joint 5.147059e-06

Joint ci ratio: 1.012137e+00	ci left: 2.803640e-06	ci right 8.604242e-06	k: 14	n:2730000
Cons ci ratio: 1.437228e-03	ci left: 7.310138e-01	ci right 7.320655e-01	k: 1997104	n:2730000
KS ci ratio: 2.263211e+00	ci left: 8.872136e-08	ci right 2.646403e-06	k: 2	n:2730000
ZNF395   2730000 perm   3722 sec   (733 perm/sec)   p_kst 7.326007e-07   p_cons 7.315399e-01   p_joint 5.128205e-06

Joint ci ratio: 1.012137e+00	ci left: 2.793408e-06	ci right 8.572840e-06	k: 14	n:2740000
Cons ci ratio: 1.434514e-03	ci left: 7.310391e-01	ci right 7.320889e-01	k: 2004486	n:2740000
KS ci ratio: 2.263211e+00	ci left: 8.839756e-08	ci right 2.636745e-06	k: 2	n:2740000
ZNF395   2740000 perm   3747 sec   (731 perm/sec)   p_kst 7.299270e-07   p_cons 7.315642e-01   p_joint 5.109489e-06

Joint ci ratio: 1.012137e+00	ci left: 2.783250e-06	ci right 8.541666e-06	k: 14	n:2750000
Cons ci ratio: 1.431847e-03	ci left: 7.310555e-01	ci right 7.321033e-01	k: 2011844	n:2750000
KS ci ratio: 2.263211e+00	ci left: 8.807611e-08	ci right 2.627157e-06	k: 2	n:2750000
ZNF395   2750000 perm   3773 sec   (729 perm/sec)   p_kst 7.272727e-07   p_cons 7.315796e-01   p_joint 5.090909e-06

Joint ci ratio: 1.012137e+00	ci left: 2.773166e-06	ci right 8.510718e-06	k: 14	n:2760000
Cons ci ratio: 1.429169e-03	ci left: 7.310790e-01	ci right 7.321249e-01	k: 2019222	n:2760000
KS ci ratio: 2.263211e+00	ci left: 8.775700e-08	ci right 2.617638e-06	k: 2	n:2760000
ZNF395   2760000 perm   3798 sec   (727 perm/sec)   p_kst 7.246377e-07   p_cons 7.316022e-01   p_joint 5.072464e-06

Joint ci ratio: 1.012137e+00	ci left: 2.763154e-06	ci right 8.479993e-06	k: 14	n:2770000
Cons ci ratio: 1.426695e-03	ci left: 7.310499e-01	ci right 7.320940e-01	k: 2026455	n:2770000
KS ci ratio: 2.263211e+00	ci left: 8.744018e-08	ci right 2.608188e-06	k: 2	n:2770000
ZNF395   2770000 perm   3823 sec   (725 perm/sec)   p_kst 7.220217e-07   p_cons 7.315722e-01   p_joint 5.054152e-06

Joint ci ratio: 1.012137e+00	ci left: 2.753215e-06	ci right 8.449490e-06	k: 14	n:2780000
Cons ci ratio: 1.424286e-03	ci left: 7.310071e-01	ci right 7.320493e-01	k: 2033649	n:2780000
KS ci ratio: 2.263211e+00	ci left: 8.712565e-08	ci right 2.598806e-06	k: 2	n:2780000
ZNF395   2780000 perm   3849 sec   (722 perm/sec)   p_kst 7.194245e-07   p_cons 7.315284e-01   p_joint 5.035971e-06

Joint ci ratio: 1.012137e+00	ci left: 2.743347e-06	ci right 8.419205e-06	k: 14	n:2790000
Cons ci ratio: 1.421833e-03	ci left: 7.309799e-01	ci right 7.320203e-01	k: 2040886	n:2790000
KS ci ratio: 2.263211e+00	ci left: 8.681337e-08	ci right 2.589491e-06	k: 2	n:2790000
ZNF395   2790000 perm   3875 sec   (720 perm/sec)   p_kst 7.168459e-07   p_cons 7.315004e-01   p_joint 5.017921e-06

Joint ci ratio: 1.012137e+00	ci left: 2.733549e-06	ci right 8.389136e-06	k: 14	n:2800000
Cons ci ratio: 1.419230e-03	ci left: 7.309980e-01	ci right 7.320365e-01	k: 2048249	n:2800000
KS ci ratio: 2.263211e+00	ci left: 8.650333e-08	ci right 2.580243e-06	k: 2	n:2800000
ZNF395   2800000 perm   3901 sec   (718 perm/sec)   p_kst 7.142857e-07   p_cons 7.315175e-01   p_joint 5.000000e-06

Joint ci ratio: 1.012137e+00	ci left: 2.723821e-06	ci right 8.359282e-06	k: 14	n:2810000
Cons ci ratio: 1.416575e-03	ci left: 7.310341e-01	ci right 7.320707e-01	k: 2055663	n:2810000
KS ci ratio: 2.263211e+00	ci left: 8.619548e-08	ci right 2.571061e-06	k: 2	n:2810000
ZNF395   2810000 perm   3927 sec   (716 perm/sec)   p_kst 7.117438e-07   p_cons 7.315527e-01   p_joint 4.982206e-06

Joint ci ratio: 1.012137e+00	ci left: 2.714162e-06	ci right 8.329639e-06	k: 14	n:2820000
Cons ci ratio: 1.414094e-03	ci left: 7.310260e-01	ci right 7.320608e-01	k: 2062953	n:2820000
KS ci ratio: 2.263211e+00	ci left: 8.588983e-08	ci right 2.561944e-06	k: 2	n:2820000
ZNF395   2820000 perm   3953 sec   (713 perm/sec)   p_kst 7.092199e-07   p_cons 7.315436e-01   p_joint 4.964539e-06

Joint ci ratio: 1.012137e+00	ci left: 2.704572e-06	ci right 8.300206e-06	k: 14	n:2830000
Cons ci ratio: 1.411657e-03	ci left: 7.310091e-01	ci right 7.320421e-01	k: 2070218	n:2830000
KS ci ratio: 2.263211e+00	ci left: 8.558633e-08	ci right 2.552891e-06	k: 2	n:2830000
ZNF395   2830000 perm   3980 sec   (711 perm/sec)   p_kst 7.067138e-07   p_cons 7.315258e-01   p_joint 4.946996e-06

Joint ci ratio: 1.012137e+00	ci left: 2.695048e-06	ci right 8.270980e-06	k: 14	n:2840000
Cons ci ratio: 1.409074e-03	ci left: 7.310367e-01	ci right 7.320678e-01	k: 2077609	n:2840000
KS ci ratio: 2.263211e+00	ci left: 8.528497e-08	ci right 2.543902e-06	k: 2	n:2840000
ZNF395   2840000 perm   4006 sec   (709 perm/sec)   p_kst 7.042254e-07   p_cons 7.315525e-01   p_joint 4.929577e-06

Joint ci ratio: 1.047661e+00	ci left: 2.428757e-06	ci right 7.800126e-06	k: 13	n:2850000
Cons ci ratio: 1.406631e-03	ci left: 7.310290e-01	ci right 7.320583e-01	k: 2084900	n:2850000
KS ci ratio: 2.263211e+00	ci left: 8.498572e-08	ci right 2.534976e-06	k: 2	n:2850000
ZNF395   2850000 perm   4033 sec   (707 perm/sec)   p_kst 7.017544e-07   p_cons 7.315439e-01   p_joint 4.561404e-06

Joint ci ratio: 1.047661e+00	ci left: 2.420265e-06	ci right 7.772853e-06	k: 13	n:2860000
Cons ci ratio: 1.404049e-03	ci left: 7.310636e-01	ci right 7.320911e-01	k: 2092312	n:2860000
KS ci ratio: 2.263211e+00	ci left: 8.468857e-08	ci right 2.526112e-06	k: 2	n:2860000
ZNF395   2860000 perm   4060 sec   (704 perm/sec)   p_kst 6.993007e-07   p_cons 7.315776e-01   p_joint 4.545455e-06

Joint ci ratio: 1.047661e+00	ci left: 2.411832e-06	ci right 7.745770e-06	k: 13	n:2870000
Cons ci ratio: 1.401577e-03	ci left: 7.310712e-01	ci right 7.320969e-01	k: 2099647	n:2870000
KS ci ratio: 2.263211e+00	ci left: 8.439349e-08	ci right 2.517310e-06	k: 2	n:2870000
ZNF395   2870000 perm   4086 sec   (702 perm/sec)   p_kst 6.968641e-07   p_cons 7.315843e-01   p_joint 4.529617e-06

Joint ci ratio: 1.047661e+00	ci left: 2.403458e-06	ci right 7.718875e-06	k: 13	n:2880000
Cons ci ratio: 1.399208e-03	ci left: 7.310534e-01	ci right 7.320774e-01	k: 2106909	n:2880000
KS ci ratio: 2.263211e+00	ci left: 8.410045e-08	ci right 2.508570e-06	k: 2	n:2880000
ZNF395   2880000 perm   4113 sec   (700 perm/sec)   p_kst 6.944444e-07   p_cons 7.315656e-01   p_joint 4.513889e-06

Joint ci ratio: 1.047661e+00	ci left: 2.395141e-06	ci right 7.692166e-06	k: 13	n:2890000
Cons ci ratio: 1.396805e-03	ci left: 7.310485e-01	ci right 7.320707e-01	k: 2114208	n:2890000
KS ci ratio: 2.263211e+00	ci left: 8.380945e-08	ci right 2.499890e-06	k: 2	n:2890000
ZNF395   2890000 perm   4140 sec   (698 perm/sec)   p_kst 6.920415e-07   p_cons 7.315599e-01   p_joint 4.498270e-06

Joint ci ratio: 1.012137e+00	ci left: 2.639289e-06	ci right 8.099856e-06	k: 14	n:2900000
Cons ci ratio: 1.394414e-03	ci left: 7.310440e-01	ci right 7.320645e-01	k: 2121508	n:2900000
KS ci ratio: 2.263211e+00	ci left: 8.352045e-08	ci right 2.491269e-06	k: 2	n:2900000
ZNF395   2900000 perm   4167 sec   (696 perm/sec)   p_kst 6.896552e-07   p_cons 7.315545e-01   p_joint 4.827586e-06

Joint ci ratio: 9.799971e-01	ci left: 2.885015e-06	ci right 8.501779e-06	k: 15	n:2910000
Cons ci ratio: 1.392014e-03	ci left: 7.310454e-01	ci right 7.320641e-01	k: 2128825	n:2910000
KS ci ratio: 2.263211e+00	ci left: 8.323344e-08	ci right 2.482708e-06	k: 2	n:2910000
ZNF395   2910000 perm   4194 sec   (694 perm/sec)   p_kst 6.872852e-07   p_cons 7.315550e-01   p_joint 5.154639e-06

Joint ci ratio: 9.799971e-01	ci left: 2.875135e-06	ci right 8.472664e-06	k: 15	n:2920000
Cons ci ratio: 1.389654e-03	ci left: 7.310393e-01	ci right 7.320562e-01	k: 2136120	n:2920000
KS ci ratio: 2.263212e+00	ci left: 8.294839e-08	ci right 2.474206e-06	k: 2	n:2920000
ZNF395   2920000 perm   4220 sec   (692 perm/sec)   p_kst 6.849315e-07   p_cons 7.315479e-01   p_joint 5.136986e-06

Joint ci ratio: 9.799972e-01	ci left: 2.865322e-06	ci right 8.443747e-06	k: 15	n:2930000
Cons ci ratio: 1.387394e-03	ci left: 7.310079e-01	ci right 7.320231e-01	k: 2143341	n:2930000
KS ci ratio: 2.263212e+00	ci left: 8.266529e-08	ci right 2.465762e-06	k: 2	n:2930000
ZNF395   2930000 perm   4248 sec   (690 perm/sec)   p_kst 6.825939e-07   p_cons 7.315157e-01   p_joint 5.119454e-06

Joint ci ratio: 9.799972e-01	ci left: 2.855576e-06	ci right 8.415026e-06	k: 15	n:2940000
Cons ci ratio: 1.384996e-03	ci left: 7.310192e-01	ci right 7.320327e-01	k: 2150687	n:2940000
KS ci ratio: 2.263212e+00	ci left: 8.238412e-08	ci right 2.457375e-06	k: 2	n:2940000
ZNF395   2940000 perm   4275 sec   (688 perm/sec)   p_kst 6.802721e-07   p_cons 7.315262e-01   p_joint 5.102041e-06

Joint ci ratio: 9.799972e-01	ci left: 2.845896e-06	ci right 8.386501e-06	k: 15	n:2950000
Cons ci ratio: 1.382587e-03	ci left: 7.310370e-01	ci right 7.320487e-01	k: 2158052	n:2950000
KS ci ratio: 2.263212e+00	ci left: 8.210485e-08	ci right 2.449044e-06	k: 2	n:2950000
ZNF395   2950000 perm   4302 sec   (686 perm/sec)   p_kst 6.779661e-07   p_cons 7.315431e-01   p_joint 5.084746e-06

Joint ci ratio: 9.799972e-01	ci left: 2.836282e-06	ci right 8.358168e-06	k: 15	n:2960000
Cons ci ratio: 1.380275e-03	ci left: 7.310306e-01	ci right 7.320406e-01	k: 2165346	n:2960000
KS ci ratio: 2.263212e+00	ci left: 8.182747e-08	ci right 2.440771e-06	k: 2	n:2960000
ZNF395   2960000 perm   4330 sec   (684 perm/sec)   p_kst 6.756757e-07   p_cons 7.315358e-01   p_joint 5.067568e-06

Joint ci ratio: 9.799972e-01	ci left: 2.826732e-06	ci right 8.330026e-06	k: 15	n:2970000
Cons ci ratio: 1.377968e-03	ci left: 7.310259e-01	ci right 7.320342e-01	k: 2172645	n:2970000
KS ci ratio: 2.263212e+00	ci left: 8.155196e-08	ci right 2.432553e-06	k: 2	n:2970000
ZNF395   2970000 perm   4358 sec   (682 perm/sec)   p_kst 6.734007e-07   p_cons 7.315303e-01   p_joint 5.050505e-06

Joint ci ratio: 9.799972e-01	ci left: 2.817246e-06	ci right 8.302073e-06	k: 15	n:2980000
Cons ci ratio: 1.375621e-03	ci left: 7.310364e-01	ci right 7.320430e-01	k: 2179989	n:2980000
KS ci ratio: 2.263212e+00	ci left: 8.127829e-08	ci right 2.424390e-06	k: 2	n:2980000
ZNF395   2980000 perm   4385 sec   (680 perm/sec)   p_kst 6.711409e-07   p_cons 7.315399e-01   p_joint 5.033557e-06

Joint ci ratio: 9.799972e-01	ci left: 2.807824e-06	ci right 8.274307e-06	k: 15	n:2990000
Cons ci ratio: 1.373350e-03	ci left: 7.310281e-01	ci right 7.320330e-01	k: 2187277	n:2990000
KS ci ratio: 2.263212e+00	ci left: 8.100646e-08	ci right 2.416281e-06	k: 2	n:2990000
ZNF395   2990000 perm   4413 sec   (678 perm/sec)   p_kst 6.688963e-07   p_cons 7.315308e-01   p_joint 5.016722e-06

Joint ci ratio: 9.799972e-01	ci left: 2.798465e-06	ci right 8.246726e-06	k: 15	n:3000000
Cons ci ratio: 1.371123e-03	ci left: 7.310108e-01	ci right 7.320141e-01	k: 2194538	n:3000000
KS ci ratio: 2.263212e+00	ci left: 8.073644e-08	ci right 2.408227e-06	k: 2	n:3000000
ZNF395   3000000 perm   4441 sec   (676 perm/sec)   p_kst 6.666667e-07   p_cons 7.315127e-01   p_joint 5.000000e-06

Joint ci ratio: 9.799972e-01	ci left: 2.789167e-06	ci right 8.219329e-06	k: 15	n:3010000
Cons ci ratio: 1.368842e-03	ci left: 7.310119e-01	ci right 7.320136e-01	k: 2201854	n:3010000
KS ci ratio: 2.263212e+00	ci left: 8.046821e-08	ci right 2.400226e-06	k: 2	n:3010000
ZNF395   3010000 perm   4469 sec   (674 perm/sec)   p_kst 6.644518e-07   p_cons 7.315130e-01   p_joint 4.983389e-06

Joint ci ratio: 9.799972e-01	ci left: 2.779932e-06	ci right 8.192112e-06	k: 15	n:3020000
Cons ci ratio: 1.366567e-03	ci left: 7.310147e-01	ci right 7.320147e-01	k: 2209175	n:3020000
KS ci ratio: 2.263212e+00	ci left: 8.020176e-08	ci right 2.392279e-06	k: 2	n:3020000
ZNF395   3020000 perm   4497 sec   (672 perm/sec)   p_kst 6.622517e-07   p_cons 7.315149e-01   p_joint 4.966887e-06

Joint ci ratio: 9.799973e-01	ci left: 2.770757e-06	ci right 8.165076e-06	k: 15	n:3030000
Cons ci ratio: 1.364319e-03	ci left: 7.310132e-01	ci right 7.320115e-01	k: 2216483	n:3030000
KS ci ratio: 2.263212e+00	ci left: 7.993707e-08	ci right 2.384383e-06	k: 2	n:3030000
ZNF395   3030000 perm   4525 sec   (670 perm/sec)   p_kst 6.600660e-07   p_cons 7.315125e-01   p_joint 4.950495e-06

Joint ci ratio: 9.799973e-01	ci left: 2.761643e-06	ci right 8.138217e-06	k: 15	n:3040000
Cons ci ratio: 1.324414e-03	ci left: 7.418899e-01	ci right 7.428734e-01	k: 2256841	n:3040000
KS ci ratio: 2.263212e+00	ci left: 7.967411e-08	ci right 2.376540e-06	k: 2	n:3040000
ZNF395   3040000 perm   4553 sec   (668 perm/sec)   p_kst 6.578947e-07   p_cons 7.423819e-01   p_joint 4.934211e-06

Joint ci ratio: 9.799973e-01	ci left: 2.752588e-06	ci right 8.111534e-06	k: 15	n:3050000
Cons ci ratio: 1.322260e-03	ci left: 7.418852e-01	ci right 7.428671e-01	k: 2264248	n:3050000
KS ci ratio: 2.263212e+00	ci left: 7.941289e-08	ci right 2.368748e-06	k: 2	n:3050000
ZNF395   3050000 perm   4581 sec   (666 perm/sec)   p_kst 6.557377e-07   p_cons 7.423764e-01   p_joint 4.918033e-06

Joint ci ratio: 9.799973e-01	ci left: 2.743593e-06	ci right 8.085026e-06	k: 15	n:3060000
Cons ci ratio: 1.320162e-03	ci left: 7.418674e-01	ci right 7.428478e-01	k: 2271615	n:3060000
KS ci ratio: 2.263212e+00	ci left: 7.915337e-08	ci right 2.361007e-06	k: 2	n:3060000
ZNF395   3060000 perm   4609 sec   (664 perm/sec)   p_kst 6.535948e-07   p_cons 7.423578e-01   p_joint 4.901961e-06

Joint ci ratio: 9.799973e-01	ci left: 2.734656e-06	ci right 8.058690e-06	k: 15	n:3070000
Cons ci ratio: 1.317953e-03	ci left: 7.418847e-01	ci right 7.428634e-01	k: 2279089	n:3070000
KS ci ratio: 2.263212e+00	ci left: 7.889554e-08	ci right 2.353316e-06	k: 2	n:3070000
ZNF395   3070000 perm   4640 sec   (662 perm/sec)   p_kst 6.514658e-07   p_cons 7.423743e-01   p_joint 4.885993e-06

Joint ci ratio: 9.799973e-01	ci left: 2.725777e-06	ci right 8.032526e-06	k: 15	n:3080000
Cons ci ratio: 1.315778e-03	ci left: 7.418953e-01	ci right 7.428724e-01	k: 2286543	n:3080000
KS ci ratio: 2.263212e+00	ci left: 7.863939e-08	ci right 2.345676e-06	k: 2	n:3080000
ZNF395   3080000 perm   4669 sec   (660 perm/sec)   p_kst 6.493506e-07   p_cons 7.423841e-01   p_joint 4.870130e-06

Joint ci ratio: 9.799973e-01	ci left: 2.716956e-06	ci right 8.006531e-06	k: 15	n:3090000
Cons ci ratio: 1.313638e-03	ci left: 7.418987e-01	ci right 7.428743e-01	k: 2293975	n:3090000
KS ci ratio: 2.263212e+00	ci left: 7.838489e-08	ci right 2.338085e-06	k: 2	n:3090000
ZNF395   3090000 perm   4697 sec   (658 perm/sec)   p_kst 6.472492e-07   p_cons 7.423867e-01   p_joint 4.854369e-06

Joint ci ratio: 9.799973e-01	ci left: 2.708192e-06	ci right 7.980703e-06	k: 15	n:3100000
Cons ci ratio: 1.311509e-03	ci left: 7.419022e-01	ci right 7.428761e-01	k: 2301407	n:3100000
KS ci ratio: 2.263212e+00	ci left: 7.813203e-08	ci right 2.330542e-06	k: 2	n:3100000
ZNF395   3100000 perm   4725 sec   (656 perm/sec)   p_kst 6.451613e-07   p_cons 7.423894e-01   p_joint 4.838710e-06

Joint ci ratio: 9.799973e-01	ci left: 2.699484e-06	ci right 7.955042e-06	k: 15	n:3110000
Cons ci ratio: 1.309343e-03	ci left: 7.419191e-01	ci right 7.428914e-01	k: 2308881	n:3110000
KS ci ratio: 2.263212e+00	ci left: 7.788081e-08	ci right 2.323049e-06	k: 2	n:3110000
ZNF395   3110000 perm   4754 sec   (654 perm/sec)   p_kst 6.430868e-07   p_cons 7.424055e-01   p_joint 4.823151e-06

Joint ci ratio: 9.799973e-01	ci left: 2.690831e-06	ci right 7.929545e-06	k: 15	n:3120000
Cons ci ratio: 1.307256e-03	ci left: 7.419163e-01	ci right 7.428871e-01	k: 2316294	n:3120000
KS ci ratio: 2.263212e+00	ci left: 7.763119e-08	ci right 2.315603e-06	k: 2	n:3120000
ZNF395   3120000 perm   4782 sec   (652 perm/sec)   p_kst 6.410256e-07   p_cons 7.424019e-01   p_joint 4.807692e-06

Joint ci ratio: 9.799973e-01	ci left: 2.682234e-06	ci right 7.904211e-06	k: 15	n:3130000
Cons ci ratio: 1.305141e-03	ci left: 7.419244e-01	ci right 7.428937e-01	k: 2323741	n:3130000
KS ci ratio: 2.263212e+00	ci left: 7.738317e-08	ci right 2.308205e-06	k: 2	n:3130000
ZNF395   3130000 perm   4811 sec   (651 perm/sec)   p_kst 6.389776e-07   p_cons 7.424093e-01   p_joint 4.792332e-06

Joint ci ratio: 9.799973e-01	ci left: 2.673692e-06	ci right 7.879038e-06	k: 15	n:3140000
Cons ci ratio: 1.303110e-03	ci left: 7.419108e-01	ci right 7.428785e-01	k: 2331120	n:3140000
KS ci ratio: 2.263212e+00	ci left: 7.713672e-08	ci right 2.300854e-06	k: 2	n:3140000
ZNF395   3140000 perm   4841 sec   (649 perm/sec)   p_kst 6.369427e-07   p_cons 7.423949e-01   p_joint 4.777070e-06

Joint ci ratio: 9.799974e-01	ci left: 2.665204e-06	ci right 7.854026e-06	k: 15	n:3150000
Cons ci ratio: 1.301131e-03	ci left: 7.418846e-01	ci right 7.428508e-01	k: 2338459	n:3150000
KS ci ratio: 2.263212e+00	ci left: 7.689184e-08	ci right 2.293550e-06	k: 2	n:3150000
ZNF395   3150000 perm   4870 sec   (647 perm/sec)   p_kst 6.349206e-07   p_cons 7.423679e-01   p_joint 4.761905e-06

Joint ci ratio: 9.799974e-01	ci left: 2.656770e-06	ci right 7.829171e-06	k: 15	n:3160000
Cons ci ratio: 1.299085e-03	ci left: 7.418814e-01	ci right 7.428460e-01	k: 2345870	n:3160000
KS ci ratio: 2.263212e+00	ci left: 7.664851e-08	ci right 2.286292e-06	k: 2	n:3160000
ZNF395   3160000 perm   4899 sec   (645 perm/sec)   p_kst 6.329114e-07   p_cons 7.423639e-01   p_joint 4.746835e-06

Joint ci ratio: 9.507370e-01	ci left: 2.884981e-06	ci right 8.196516e-06	k: 16	n:3170000
Cons ci ratio: 1.297081e-03	ci left: 7.418683e-01	ci right 7.428315e-01	k: 2353250	n:3170000
KS ci ratio: 2.263212e+00	ci left: 7.640672e-08	ci right 2.279079e-06	k: 2	n:3170000
ZNF395   3170000 perm   4928 sec   (643 perm/sec)   p_kst 6.309148e-07   p_cons 7.423502e-01   p_joint 5.047319e-06

Joint ci ratio: 9.507370e-01	ci left: 2.875909e-06	ci right 8.170741e-06	k: 16	n:3180000
Cons ci ratio: 1.295094e-03	ci left: 7.418529e-01	ci right 7.428146e-01	k: 2360622	n:3180000
KS ci ratio: 2.263212e+00	ci left: 7.616645e-08	ci right 2.271912e-06	k: 2	n:3180000
ZNF395   3180000 perm   4957 sec   (642 perm/sec)   p_kst 6.289308e-07   p_cons 7.423340e-01   p_joint 5.031447e-06

Joint ci ratio: 9.507370e-01	ci left: 2.866894e-06	ci right 8.145128e-06	k: 16	n:3190000
Cons ci ratio: 1.293132e-03	ci left: 7.418332e-01	ci right 7.427934e-01	k: 2367980	n:3190000
KS ci ratio: 2.263212e+00	ci left: 7.592768e-08	ci right 2.264791e-06	k: 2	n:3190000
ZNF395   3190000 perm   4987 sec   (640 perm/sec)   p_kst 6.269592e-07   p_cons 7.423135e-01   p_joint 5.015674e-06

Joint ci ratio: 9.507370e-01	ci left: 2.857935e-06	ci right 8.119674e-06	k: 16	n:3200000
Cons ci ratio: 1.291104e-03	ci left: 7.418357e-01	ci right 7.427944e-01	k: 2375409	n:3200000
KS ci ratio: 2.263212e+00	ci left: 7.569041e-08	ci right 2.257713e-06	k: 2	n:3200000
ZNF395   3200000 perm   5016 sec   (638 perm/sec)   p_kst 6.250000e-07   p_cons 7.423153e-01   p_joint 5.000000e-06

Joint ci ratio: 9.507370e-01	ci left: 2.849031e-06	ci right 8.094379e-06	k: 16	n:3210000
Cons ci ratio: 1.289028e-03	ci left: 7.418551e-01	ci right 7.428123e-01	k: 2382892	n:3210000
KS ci ratio: 2.263212e+00	ci left: 7.545461e-08	ci right 2.250680e-06	k: 2	n:3210000
ZNF395   3210000 perm   5046 sec   (636 perm/sec)   p_kst 6.230530e-07   p_cons 7.423340e-01   p_joint 4.984424e-06

Joint ci ratio: 9.507370e-01	ci left: 2.840183e-06	ci right 8.069241e-06	k: 16	n:3220000
Cons ci ratio: 1.287036e-03	ci left: 7.418527e-01	ci right 7.428084e-01	k: 2390305	n:3220000
KS ci ratio: 2.263212e+00	ci left: 7.522028e-08	ci right 2.243690e-06	k: 2	n:3220000
ZNF395   3220000 perm   5075 sec   (634 perm/sec)   p_kst 6.211180e-07   p_cons 7.423307e-01   p_joint 4.968944e-06

Joint ci ratio: 9.507370e-01	ci left: 2.831390e-06	ci right 8.044259e-06	k: 16	n:3230000
Cons ci ratio: 1.285061e-03	ci left: 7.418477e-01	ci right 7.428020e-01	k: 2397710	n:3230000
KS ci ratio: 2.263212e+00	ci left: 7.498740e-08	ci right 2.236744e-06	k: 2	n:3230000
ZNF395   3230000 perm   5105 sec   (633 perm/sec)   p_kst 6.191950e-07   p_cons 7.423251e-01   p_joint 4.953560e-06

Joint ci ratio: 9.507370e-01	ci left: 2.822651e-06	ci right 8.019431e-06	k: 16	n:3240000
Cons ci ratio: 1.283128e-03	ci left: 7.418330e-01	ci right 7.427857e-01	k: 2405083	n:3240000
KS ci ratio: 2.263212e+00	ci left: 7.475596e-08	ci right 2.229840e-06	k: 2	n:3240000
ZNF395   3240000 perm   5135 sec   (631 perm/sec)   p_kst 6.172840e-07   p_cons 7.423096e-01   p_joint 4.938272e-06

Joint ci ratio: 9.507370e-01	ci left: 2.813966e-06	ci right 7.994756e-06	k: 16	n:3250000
Cons ci ratio: 1.281136e-03	ci left: 7.418389e-01	ci right 7.427902e-01	k: 2412523	n:3250000
KS ci ratio: 2.263212e+00	ci left: 7.452594e-08	ci right 2.222979e-06	k: 2	n:3250000
ZNF395   3250000 perm   5165 sec   (629 perm/sec)   p_kst 6.153846e-07   p_cons 7.423148e-01   p_joint 4.923077e-06

Joint ci ratio: 9.507370e-01	ci left: 2.805335e-06	ci right 7.970232e-06	k: 16	n:3260000
Cons ci ratio: 1.279141e-03	ci left: 7.418482e-01	ci right 7.427980e-01	k: 2419974	n:3260000
KS ci ratio: 2.263212e+00	ci left: 7.429733e-08	ci right 2.216160e-06	k: 2	n:3260000
ZNF395   3260000 perm   5195 sec   (628 perm/sec)   p_kst 6.134969e-07   p_cons 7.423233e-01   p_joint 4.907975e-06

Joint ci ratio: 9.507370e-01	ci left: 2.796756e-06	ci right 7.945859e-06	k: 16	n:3270000
Cons ci ratio: 1.277132e-03	ci left: 7.418641e-01	ci right 7.428125e-01	k: 2427447	n:3270000
KS ci ratio: 2.263212e+00	ci left: 7.407012e-08	ci right 2.209383e-06	k: 2	n:3270000
ZNF395   3270000 perm   5225 sec   (626 perm/sec)   p_kst 6.116208e-07   p_cons 7.423385e-01   p_joint 4.892966e-06

Joint ci ratio: 9.507370e-01	ci left: 2.788229e-06	ci right 7.921634e-06	k: 16	n:3280000
Cons ci ratio: 1.275227e-03	ci left: 7.418519e-01	ci right 7.427989e-01	k: 2434828	n:3280000
KS ci ratio: 2.263212e+00	ci left: 7.384430e-08	ci right 2.202647e-06	k: 2	n:3280000
ZNF395   3280000 perm   5255 sec   (624 perm/sec)   p_kst 6.097561e-07   p_cons 7.423256e-01   p_joint 4.878049e-06

Joint ci ratio: 9.507370e-01	ci left: 2.779754e-06	ci right 7.897556e-06	k: 16	n:3290000
Cons ci ratio: 1.273295e-03	ci left: 7.418504e-01	ci right 7.427959e-01	k: 2442244	n:3290000
KS ci ratio: 2.263212e+00	ci left: 7.361985e-08	ci right 2.195952e-06	k: 2	n:3290000
ZNF395   3290000 perm   5285 sec   (623 perm/sec)   p_kst 6.079027e-07   p_cons 7.423234e-01   p_joint 4.863222e-06

Joint ci ratio: 9.507371e-01	ci left: 2.771330e-06	ci right 7.873624e-06	k: 16	n:3300000
Cons ci ratio: 1.271334e-03	ci left: 7.418602e-01	ci right 7.428042e-01	k: 2449697	n:3300000
KS ci ratio: 2.263212e+00	ci left: 7.339676e-08	ci right 2.189298e-06	k: 2	n:3300000
ZNF395   3300000 perm   5315 sec   (621 perm/sec)   p_kst 6.060606e-07   p_cons 7.423324e-01   p_joint 4.848485e-06

Joint ci ratio: 9.507371e-01	ci left: 2.762958e-06	ci right 7.849836e-06	k: 16	n:3310000
Cons ci ratio: 1.269422e-03	ci left: 7.418581e-01	ci right 7.428007e-01	k: 2457111	n:3310000
KS ci ratio: 2.263212e+00	ci left: 7.317502e-08	ci right 2.182683e-06	k: 2	n:3310000
ZNF395   3310000 perm   5345 sec   (619 perm/sec)   p_kst 6.042296e-07   p_cons 7.423296e-01   p_joint 4.833837e-06

Joint ci ratio: 9.507371e-01	ci left: 2.754636e-06	ci right 7.826192e-06	k: 16	n:3320000
Cons ci ratio: 1.267576e-03	ci left: 7.418385e-01	ci right 7.427797e-01	k: 2464467	n:3320000
KS ci ratio: 2.263212e+00	ci left: 7.295461e-08	ci right 2.176109e-06	k: 2	n:3320000
ZNF395   3320000 perm   5377 sec   (617 perm/sec)   p_kst 6.024096e-07   p_cons 7.423093e-01   p_joint 4.819277e-06

Joint ci ratio: 9.507371e-01	ci left: 2.746364e-06	ci right 7.802690e-06	k: 16	n:3330000
Cons ci ratio: 1.265688e-03	ci left: 7.418341e-01	ci right 7.427739e-01	k: 2471873	n:3330000
KS ci ratio: 2.263212e+00	ci left: 7.273553e-08	ci right 2.169574e-06	k: 2	n:3330000
ZNF395   3330000 perm   5407 sec   (616 perm/sec)   p_kst 6.006006e-07   p_cons 7.423042e-01   p_joint 4.804805e-06

Joint ci ratio: 9.507371e-01	ci left: 2.738141e-06	ci right 7.779329e-06	k: 16	n:3340000
Cons ci ratio: 1.193617e-03	ci left: 7.630930e-01	ci right 7.640047e-01	k: 2550254	n:3340000
KS ci ratio: 2.263212e+00	ci left: 7.251776e-08	ci right 2.163078e-06	k: 2	n:3340000
ZNF395   3340000 perm   5438 sec   (614 perm/sec)   p_kst 5.988024e-07   p_cons 7.635491e-01   p_joint 4.790419e-06

Joint ci ratio: 9.507371e-01	ci left: 2.729967e-06	ci right 7.756107e-06	k: 16	n:3350000
Cons ci ratio: 1.191859e-03	ci left: 7.630861e-01	ci right 7.639964e-01	k: 2557864	n:3350000
KS ci ratio: 2.263212e+00	ci left: 7.230129e-08	ci right 2.156622e-06	k: 2	n:3350000
ZNF395   3350000 perm   5469 sec   (613 perm/sec)   p_kst 5.970149e-07   p_cons 7.635415e-01   p_joint 4.776119e-06

Joint ci ratio: 9.507371e-01	ci left: 2.721842e-06	ci right 7.733024e-06	k: 16	n:3360000
Cons ci ratio: 1.190021e-03	ci left: 7.631060e-01	ci right 7.640150e-01	k: 2565564	n:3360000
KS ci ratio: 2.263212e+00	ci left: 7.208610e-08	ci right 2.150203e-06	k: 2	n:3360000
ZNF395   3360000 perm   5500 sec   (611 perm/sec)   p_kst 5.952381e-07   p_cons 7.635607e-01   p_joint 4.761905e-06

Joint ci ratio: 9.507371e-01	ci left: 2.713766e-06	ci right 7.710077e-06	k: 16	n:3370000
Cons ci ratio: 1.188252e-03	ci left: 7.631071e-01	ci right 7.640147e-01	k: 2573201	n:3370000
KS ci ratio: 2.263212e+00	ci left: 7.187220e-08	ci right 2.143823e-06	k: 2	n:3370000
ZNF395   3370000 perm   5531 sec   (609 perm/sec)   p_kst 5.934718e-07   p_cons 7.635611e-01   p_joint 4.747774e-06

Joint ci ratio: 9.507371e-01	ci left: 2.705737e-06	ci right 7.687266e-06	k: 16	n:3380000
Cons ci ratio: 1.186508e-03	ci left: 7.631032e-01	ci right 7.640094e-01	k: 2580821	n:3380000
KS ci ratio: 2.263212e+00	ci left: 7.165956e-08	ci right 2.137480e-06	k: 2	n:3380000
ZNF395   3380000 perm   5562 sec   (608 perm/sec)   p_kst 5.917160e-07   p_cons 7.635565e-01   p_joint 4.733728e-06

Joint ci ratio: 9.507371e-01	ci left: 2.697755e-06	ci right 7.664590e-06	k: 16	n:3390000
Cons ci ratio: 1.184785e-03	ci left: 7.630954e-01	ci right 7.640003e-01	k: 2588428	n:3390000
KS ci ratio: 2.263212e+00	ci left: 7.144817e-08	ci right 2.131175e-06	k: 2	n:3390000
ZNF395   3390000 perm   5594 sec   (606 perm/sec)   p_kst 5.899705e-07   p_cons 7.635481e-01   p_joint 4.719764e-06

Joint ci ratio: 9.507371e-01	ci left: 2.689821e-06	ci right 7.642047e-06	k: 16	n:3400000
Cons ci ratio: 1.183013e-03	ci left: 7.631048e-01	ci right 7.640083e-01	k: 2596093	n:3400000
KS ci ratio: 2.263212e+00	ci left: 7.123803e-08	ci right 2.124907e-06	k: 2	n:3400000
ZNF395   3400000 perm   5625 sec   (604 perm/sec)   p_kst 5.882353e-07   p_cons 7.635568e-01   p_joint 4.705882e-06

Joint ci ratio: 9.507371e-01	ci left: 2.681933e-06	ci right 7.619636e-06	k: 16	n:3410000
Cons ci ratio: 1.181342e-03	ci left: 7.630856e-01	ci right 7.639879e-01	k: 2603661	n:3410000
KS ci ratio: 2.263212e+00	ci left: 7.102912e-08	ci right 2.118675e-06	k: 2	n:3410000
ZNF395   3410000 perm   5656 sec   (603 perm/sec)   p_kst 5.865103e-07   p_cons 7.635370e-01   p_joint 4.692082e-06

Joint ci ratio: 9.507371e-01	ci left: 2.674091e-06	ci right 7.597357e-06	k: 16	n:3420000
Cons ci ratio: 1.179603e-03	ci left: 7.630894e-01	ci right 7.639903e-01	k: 2611307	n:3420000
KS ci ratio: 2.263212e+00	ci left: 7.082143e-08	ci right 2.112480e-06	k: 2	n:3420000
ZNF395   3420000 perm   5687 sec   (601 perm/sec)   p_kst 5.847953e-07   p_cons 7.635401e-01   p_joint 4.678363e-06

Joint ci ratio: 9.507372e-01	ci left: 2.666295e-06	ci right 7.575207e-06	k: 16	n:3430000
Cons ci ratio: 1.177872e-03	ci left: 7.630931e-01	ci right 7.639927e-01	k: 2618953	n:3430000
KS ci ratio: 2.263212e+00	ci left: 7.061496e-08	ci right 2.106321e-06	k: 2	n:3430000
ZNF395   3430000 perm   5718 sec   (600 perm/sec)   p_kst 5.830904e-07   p_cons 7.635431e-01   p_joint 4.664723e-06

Joint ci ratio: 9.507372e-01	ci left: 2.658544e-06	ci right 7.553186e-06	k: 16	n:3440000
Cons ci ratio: 1.176196e-03	ci left: 7.630823e-01	ci right 7.639806e-01	k: 2626549	n:3440000
KS ci ratio: 2.263212e+00	ci left: 7.040968e-08	ci right 2.100198e-06	k: 2	n:3440000
ZNF395   3440000 perm   5749 sec   (598 perm/sec)   p_kst 5.813953e-07   p_cons 7.635317e-01   p_joint 4.651163e-06

Joint ci ratio: 9.507372e-01	ci left: 2.650838e-06	ci right 7.531293e-06	k: 16	n:3450000
Cons ci ratio: 1.174438e-03	ci left: 7.630991e-01	ci right 7.639961e-01	k: 2634240	n:3450000
KS ci ratio: 2.263212e+00	ci left: 7.020560e-08	ci right 2.094111e-06	k: 2	n:3450000
ZNF395   3450000 perm   5782 sec   (597 perm/sec)   p_kst 5.797101e-07   p_cons 7.635478e-01   p_joint 4.637681e-06

Joint ci ratio: 9.507372e-01	ci left: 2.643176e-06	ci right 7.509526e-06	k: 16	n:3460000
Cons ci ratio: 1.172783e-03	ci left: 7.630863e-01	ci right 7.639820e-01	k: 2641829	n:3460000
KS ci ratio: 2.263212e+00	ci left: 7.000269e-08	ci right 2.088058e-06	k: 2	n:3460000
ZNF395   3460000 perm   5814 sec   (595 perm/sec)   p_kst 5.780347e-07   p_cons 7.635344e-01   p_joint 4.624277e-06

Joint ci ratio: 9.507372e-01	ci left: 2.635559e-06	ci right 7.487885e-06	k: 16	n:3470000
Cons ci ratio: 1.171155e-03	ci left: 7.630675e-01	ci right 7.639620e-01	k: 2649397	n:3470000
KS ci ratio: 2.263212e+00	ci left: 6.980095e-08	ci right 2.082041e-06	k: 2	n:3470000
ZNF395   3470000 perm   5845 sec   (594 perm/sec)   p_kst 5.763689e-07   p_cons 7.635150e-01   p_joint 4.610951e-06

Joint ci ratio: 9.507372e-01	ci left: 2.627986e-06	ci right 7.466368e-06	k: 16	n:3480000
Cons ci ratio: 1.169453e-03	ci left: 7.630736e-01	ci right 7.639668e-01	k: 2657051	n:3480000
KS ci ratio: 2.263212e+00	ci left: 6.960038e-08	ci right 2.076058e-06	k: 2	n:3480000
ZNF395   3480000 perm   5877 sec   (592 perm/sec)   p_kst 5.747126e-07   p_cons 7.635204e-01   p_joint 4.597701e-06

Joint ci ratio: 9.507372e-01	ci left: 2.620456e-06	ci right 7.444974e-06	k: 16	n:3490000
Cons ci ratio: 1.167761e-03	ci left: 7.630791e-01	ci right 7.639709e-01	k: 2664703	n:3490000
KS ci ratio: 2.263212e+00	ci left: 6.940095e-08	ci right 2.070110e-06	k: 2	n:3490000
ZNF395   3490000 perm   5910 sec   (591 perm/sec)   p_kst 5.730659e-07   p_cons 7.635252e-01   p_joint 4.584527e-06

Joint ci ratio: 9.507372e-01	ci left: 2.612969e-06	ci right 7.423703e-06	k: 16	n:3500000
Cons ci ratio: 1.166027e-03	ci left: 7.630999e-01	ci right 7.639905e-01	k: 2672409	n:3500000
KS ci ratio: 2.263212e+00	ci left: 6.920266e-08	ci right 2.064195e-06	k: 2	n:3500000
ZNF395   3500000 perm   5942 sec   (589 perm/sec)   p_kst 5.714286e-07   p_cons 7.635454e-01   p_joint 4.571429e-06

Joint ci ratio: 9.239504e-01	ci left: 2.821406e-06	ci right 7.754589e-06	k: 17	n:3510000
Cons ci ratio: 1.164383e-03	ci left: 7.630947e-01	ci right 7.639840e-01	k: 2680024	n:3510000
KS ci ratio: 2.263212e+00	ci left: 6.900550e-08	ci right 2.058314e-06	k: 2	n:3510000
ZNF395   3510000 perm   5974 sec   (588 perm/sec)   p_kst 5.698006e-07   p_cons 7.635396e-01   p_joint 4.843305e-06

Joint ci ratio: 9.239504e-01	ci left: 2.813391e-06	ci right 7.732559e-06	k: 17	n:3520000
Cons ci ratio: 1.162699e-03	ci left: 7.631043e-01	ci right 7.639924e-01	k: 2687691	n:3520000
KS ci ratio: 2.263212e+00	ci left: 6.880946e-08	ci right 2.052467e-06	k: 2	n:3520000
ZNF395   3520000 perm   6006 sec   (586 perm/sec)   p_kst 5.681818e-07   p_cons 7.635486e-01   p_joint 4.829545e-06

Joint ci ratio: 9.799976e-01	ci left: 2.378298e-06	ci right 7.008551e-06	k: 15	n:3530000
Cons ci ratio: 1.161083e-03	ci left: 7.630952e-01	ci right 7.639820e-01	k: 2695292	n:3530000
KS ci ratio: 2.263212e+00	ci left: 6.861453e-08	ci right 2.046652e-06	k: 2	n:3530000
ZNF395   3530000 perm   6038 sec   (585 perm/sec)   p_kst 5.665722e-07   p_cons 7.635388e-01   p_joint 4.249292e-06

Joint ci ratio: 9.799976e-01	ci left: 2.371580e-06	ci right 6.988753e-06	k: 15	n:3540000
Cons ci ratio: 1.159423e-03	ci left: 7.631016e-01	ci right 7.639872e-01	k: 2702948	n:3540000
KS ci ratio: 2.263212e+00	ci left: 6.842071e-08	ci right 2.040871e-06	k: 2	n:3540000
ZNF395   3540000 perm   6070 sec   (583 perm/sec)   p_kst 5.649718e-07   p_cons 7.635446e-01   p_joint 4.237288e-06

Joint ci ratio: 9.799977e-01	ci left: 2.364899e-06	ci right 6.969066e-06	k: 15	n:3550000
Cons ci ratio: 1.157813e-03	ci left: 7.630945e-01	ci right 7.639788e-01	k: 2710556	n:3550000
KS ci ratio: 2.263212e+00	ci left: 6.822797e-08	ci right 2.035122e-06	k: 2	n:3550000
ZNF395   3550000 perm   6102 sec   (582 perm/sec)   p_kst 5.633803e-07   p_cons 7.635369e-01   p_joint 4.225352e-06

Joint ci ratio: 9.799977e-01	ci left: 2.358256e-06	ci right 6.949490e-06	k: 15	n:3560000
Cons ci ratio: 1.156201e-03	ci left: 7.630906e-01	ci right 7.639736e-01	k: 2718175	n:3560000
KS ci ratio: 2.263212e+00	ci left: 6.803632e-08	ci right 2.029405e-06	k: 2	n:3560000
ZNF395   3560000 perm   6136 sec   (580 perm/sec)   p_kst 5.617978e-07   p_cons 7.635323e-01   p_joint 4.213483e-06

Joint ci ratio: 9.799977e-01	ci left: 2.351651e-06	ci right 6.930024e-06	k: 15	n:3570000
Cons ci ratio: 1.154561e-03	ci left: 7.630973e-01	ci right 7.639791e-01	k: 2725832	n:3570000
KS ci ratio: 2.263212e+00	ci left: 6.784574e-08	ci right 2.023721e-06	k: 2	n:3570000
ZNF395   3570000 perm   6168 sec   (579 perm/sec)   p_kst 5.602241e-07   p_cons 7.635384e-01   p_joint 4.201681e-06

Joint ci ratio: 9.799977e-01	ci left: 2.345082e-06	ci right 6.910666e-06	k: 15	n:3580000
Cons ci ratio: 1.152891e-03	ci left: 7.631154e-01	ci right 7.639959e-01	k: 2733530	n:3580000
KS ci ratio: 2.263212e+00	ci left: 6.765623e-08	ci right 2.018068e-06	k: 2	n:3580000
ZNF395   3580000 perm   6201 sec   (577 perm/sec)   p_kst 5.586592e-07   p_cons 7.635559e-01   p_joint 4.189944e-06

Joint ci ratio: 9.799977e-01	ci left: 2.338549e-06	ci right 6.891417e-06	k: 15	n:3590000
Cons ci ratio: 1.151242e-03	ci left: 7.631292e-01	ci right 7.640085e-01	k: 2741213	n:3590000
KS ci ratio: 2.263212e+00	ci left: 6.746777e-08	ci right 2.012446e-06	k: 2	n:3590000
ZNF395   3590000 perm   6234 sec   (576 perm/sec)   p_kst 5.571031e-07   p_cons 7.635691e-01   p_joint 4.178273e-06

Joint ci ratio: 9.799977e-01	ci left: 2.332054e-06	ci right 6.872274e-06	k: 15	n:3600000
Cons ci ratio: 1.149681e-03	ci left: 7.631177e-01	ci right 7.639958e-01	k: 2748805	n:3600000
KS ci ratio: 2.263212e+00	ci left: 6.728036e-08	ci right 2.006856e-06	k: 2	n:3600000
ZNF395   3600000 perm   6267 sec   (574 perm/sec)   p_kst 5.555556e-07   p_cons 7.635569e-01   p_joint 4.166667e-06

Joint ci ratio: 9.799977e-01	ci left: 2.325594e-06	ci right 6.853237e-06	k: 15	n:3610000
Cons ci ratio: 1.148129e-03	ci left: 7.631054e-01	ci right 7.639823e-01	k: 2756394	n:3610000
KS ci ratio: 2.263212e+00	ci left: 6.709399e-08	ci right 2.001297e-06	k: 2	n:3610000
ZNF395   3610000 perm   6300 sec   (573 perm/sec)   p_kst 5.540166e-07   p_cons 7.635440e-01   p_joint 4.155125e-06

Joint ci ratio: 9.799977e-01	ci left: 2.319169e-06	ci right 6.834305e-06	k: 15	n:3620000
Cons ci ratio: 1.146516e-03	ci left: 7.631142e-01	ci right 7.639898e-01	k: 2764059	n:3620000
KS ci ratio: 2.263212e+00	ci left: 6.690865e-08	ci right 1.995769e-06	k: 2	n:3620000
ZNF395   3620000 perm   6333 sec   (572 perm/sec)   p_kst 5.524862e-07   p_cons 7.635522e-01   p_joint 4.143646e-06

Joint ci ratio: 9.799977e-01	ci left: 2.312780e-06	ci right 6.815478e-06	k: 15	n:3630000
Cons ci ratio: 1.144955e-03	ci left: 7.631086e-01	ci right 7.639830e-01	k: 2771672	n:3630000
KS ci ratio: 2.263212e+00	ci left: 6.672433e-08	ci right 1.990271e-06	k: 2	n:3630000
ZNF395   3630000 perm   6367 sec   (570 perm/sec)   p_kst 5.509642e-07   p_cons 7.635460e-01   p_joint 4.132231e-06

Joint ci ratio: 9.799977e-01	ci left: 2.306427e-06	ci right 6.796754e-06	k: 15	n:3640000
Cons ci ratio: 1.143421e-03	ci left: 7.630967e-01	ci right 7.639700e-01	k: 2779262	n:3640000
KS ci ratio: 2.263212e+00	ci left: 6.654102e-08	ci right 1.984803e-06	k: 2	n:3640000
ZNF395   3640000 perm   6400 sec   (569 perm/sec)   p_kst 5.494505e-07   p_cons 7.635335e-01   p_joint 4.120879e-06

Joint ci ratio: 9.799977e-01	ci left: 2.300108e-06	ci right 6.778133e-06	k: 15	n:3650000
Cons ci ratio: 1.141826e-03	ci left: 7.631059e-01	ci right 7.639780e-01	k: 2786929	n:3650000
KS ci ratio: 2.263212e+00	ci left: 6.635871e-08	ci right 1.979365e-06	k: 2	n:3650000
ZNF395   3650000 perm   6434 sec   (567 perm/sec)   p_kst 5.479452e-07   p_cons 7.635422e-01   p_joint 4.109589e-06

Joint ci ratio: 9.799977e-01	ci left: 2.293823e-06	ci right 6.759614e-06	k: 15	n:3660000
Cons ci ratio: 1.140215e-03	ci left: 7.631223e-01	ci right 7.639932e-01	k: 2794622	n:3660000
KS ci ratio: 2.263212e+00	ci left: 6.617741e-08	ci right 1.973957e-06	k: 2	n:3660000
ZNF395   3660000 perm   6466 sec   (566 perm/sec)   p_kst 5.464481e-07   p_cons 7.635579e-01   p_joint 4.098361e-06

Joint ci ratio: 9.799977e-01	ci left: 2.287573e-06	ci right 6.741195e-06	k: 15	n:3670000
Cons ci ratio: 1.138715e-03	ci left: 7.631058e-01	ci right 7.639755e-01	k: 2802195	n:3670000
KS ci ratio: 2.263212e+00	ci left: 6.599709e-08	ci right 1.968578e-06	k: 2	n:3670000
ZNF395   3670000 perm   6499 sec   (565 perm/sec)   p_kst 5.449591e-07   p_cons 7.635409e-01   p_joint 4.087193e-06

Joint ci ratio: 9.507373e-01	ci left: 2.485160e-06	ci right 7.060588e-06	k: 16	n:3680000
Cons ci ratio: 1.137151e-03	ci left: 7.631115e-01	ci right 7.639800e-01	k: 2809849	n:3680000
KS ci ratio: 1.959999e+00	ci left: 1.681175e-07	ci right 2.382409e-06	k: 3	n:3680000
ZNF395   3680000 perm   6532 sec   (563 perm/sec)   p_kst 8.152174e-07   p_cons 7.635459e-01   p_joint 4.347826e-06

Joint ci ratio: 9.507373e-01	ci left: 2.478425e-06	ci right 7.041453e-06	k: 16	n:3690000
Cons ci ratio: 1.135595e-03	ci left: 7.631165e-01	ci right 7.639839e-01	k: 2817501	n:3690000
KS ci ratio: 1.959999e+00	ci left: 1.676619e-07	ci right 2.375953e-06	k: 3	n:3690000
ZNF395   3690000 perm   6565 sec   (562 perm/sec)   p_kst 8.130081e-07   p_cons 7.635504e-01   p_joint 4.336043e-06

Joint ci ratio: 9.507373e-01	ci left: 2.471727e-06	ci right 7.022422e-06	k: 16	n:3700000
Cons ci ratio: 1.134044e-03	ci left: 7.631218e-01	ci right 7.639880e-01	k: 2825154	n:3700000
KS ci ratio: 1.959999e+00	ci left: 1.672087e-07	ci right 2.369531e-06	k: 3	n:3700000
ZNF395   3700000 perm   6599 sec   (561 perm/sec)   p_kst 8.108108e-07   p_cons 7.635551e-01   p_joint 4.324324e-06

Joint ci ratio: 9.507373e-01	ci left: 2.465065e-06	ci right 7.003494e-06	k: 16	n:3710000
Cons ci ratio: 1.132479e-03	ci left: 7.631339e-01	ci right 7.639989e-01	k: 2832832	n:3710000
KS ci ratio: 1.959999e+00	ci left: 1.667580e-07	ci right 2.363145e-06	k: 3	n:3710000
ZNF395   3710000 perm   6632 sec   (559 perm/sec)   p_kst 8.086253e-07   p_cons 7.635666e-01   p_joint 4.312668e-06

Joint ci ratio: 9.507373e-01	ci left: 2.458438e-06	ci right 6.984667e-06	k: 16	n:3720000
Cons ci ratio: 1.130920e-03	ci left: 7.631459e-01	ci right 7.640097e-01	k: 2840510	n:3720000
KS ci ratio: 1.959999e+00	ci left: 1.663097e-07	ci right 2.356792e-06	k: 3	n:3720000
ZNF395   3720000 perm   6666 sec   (558 perm/sec)   p_kst 8.064516e-07   p_cons 7.635780e-01   p_joint 4.301075e-06

Joint ci ratio: 9.507374e-01	ci left: 2.451847e-06	ci right 6.965942e-06	k: 16	n:3730000
Cons ci ratio: 1.129406e-03	ci left: 7.631454e-01	ci right 7.640081e-01	k: 2848142	n:3730000
KS ci ratio: 1.959999e+00	ci left: 1.658639e-07	ci right 2.350474e-06	k: 3	n:3730000
ZNF395   3730000 perm   6700 sec   (557 perm/sec)   p_kst 8.042895e-07   p_cons 7.635769e-01   p_joint 4.289544e-06

Joint ci ratio: 9.507374e-01	ci left: 2.445291e-06	ci right 6.947316e-06	k: 16	n:3740000
Cons ci ratio: 1.127883e-03	ci left: 7.631501e-01	ci right 7.640116e-01	k: 2855793	n:3740000
KS ci ratio: 1.959999e+00	ci left: 1.654204e-07	ci right 2.344189e-06	k: 3	n:3740000
ZNF395   3740000 perm   6734 sec   (555 perm/sec)   p_kst 8.021390e-07   p_cons 7.635810e-01   p_joint 4.278075e-06

Joint ci ratio: 9.507374e-01	ci left: 2.438771e-06	ci right 6.928790e-06	k: 16	n:3750000
Cons ci ratio: 1.126354e-03	ci left: 7.631582e-01	ci right 7.640185e-01	k: 2863457	n:3750000
KS ci ratio: 1.959999e+00	ci left: 1.649793e-07	ci right 2.337938e-06	k: 3	n:3750000
ZNF395   3750000 perm   6768 sec   (554 perm/sec)   p_kst 8.000000e-07   p_cons 7.635885e-01   p_joint 4.266667e-06

Joint ci ratio: 9.507374e-01	ci left: 2.432284e-06	ci right 6.910363e-06	k: 16	n:3760000
Cons ci ratio: 1.124876e-03	ci left: 7.631521e-01	ci right 7.640113e-01	k: 2871068	n:3760000
KS ci ratio: 1.959999e+00	ci left: 1.645405e-07	ci right 2.331720e-06	k: 3	n:3760000
ZNF395   3760000 perm   6802 sec   (553 perm/sec)   p_kst 7.978723e-07   p_cons 7.635819e-01   p_joint 4.255319e-06

Joint ci ratio: 9.507374e-01	ci left: 2.425833e-06	ci right 6.892033e-06	k: 16	n:3770000
Cons ci ratio: 1.123461e-03	ci left: 7.631278e-01	ci right 7.639859e-01	k: 2878610	n:3770000
KS ci ratio: 1.959999e+00	ci left: 1.641040e-07	ci right 2.325535e-06	k: 3	n:3770000
ZNF395   3770000 perm   6836 sec   (551 perm/sec)   p_kst 7.957560e-07   p_cons 7.635570e-01   p_joint 4.244032e-06

Joint ci ratio: 9.239505e-01	ci left: 2.619877e-06	ci right 7.200690e-06	k: 17	n:3780000
Cons ci ratio: 1.121981e-03	ci left: 7.631261e-01	ci right 7.639830e-01	k: 2886237	n:3780000
KS ci ratio: 1.959999e+00	ci left: 1.636699e-07	ci right 2.319383e-06	k: 3	n:3780000
ZNF395   3780000 perm   6871 sec   (550 perm/sec)   p_kst 7.936508e-07   p_cons 7.635548e-01   p_joint 4.497354e-06

Joint ci ratio: 1.012138e+00	ci left: 2.019508e-06	ci right 6.197781e-06	k: 14	n:3790000
Cons ci ratio: 1.120462e-03	ci left: 7.631387e-01	ci right 7.639945e-01	k: 2893918	n:3790000
KS ci ratio: 1.959999e+00	ci left: 1.632381e-07	ci right 2.313263e-06	k: 3	n:3790000
ZNF395   3790000 perm   6905 sec   (549 perm/sec)   p_kst 7.915567e-07   p_cons 7.635668e-01   p_joint 3.693931e-06

Joint ci ratio: 1.012138e+00	ci left: 2.014194e-06	ci right 6.181472e-06	k: 14	n:3800000
Cons ci ratio: 1.118994e-03	ci left: 7.631369e-01	ci right 7.639916e-01	k: 2901545	n:3800000
KS ci ratio: 1.959999e+00	ci left: 1.628085e-07	ci right 2.307175e-06	k: 3	n:3800000
ZNF395   3800000 perm   6939 sec   (548 perm/sec)   p_kst 7.894737e-07   p_cons 7.635645e-01   p_joint 3.684211e-06

Joint ci ratio: 1.012138e+00	ci left: 2.008907e-06	ci right 6.165247e-06	k: 14	n:3810000
Cons ci ratio: 1.117475e-03	ci left: 7.631536e-01	ci right 7.640071e-01	k: 2909242	n:3810000
KS ci ratio: 1.959999e+00	ci left: 1.623812e-07	ci right 2.301120e-06	k: 3	n:3810000
ZNF395   3810000 perm   6974 sec   (546 perm/sec)   p_kst 7.874016e-07   p_cons 7.635806e-01   p_joint 3.674541e-06

Joint ci ratio: 1.012138e+00	ci left: 2.003648e-06	ci right 6.149108e-06	k: 14	n:3820000
Cons ci ratio: 1.116062e-03	ci left: 7.631377e-01	ci right 7.639902e-01	k: 2916815	n:3820000
KS ci ratio: 1.959999e+00	ci left: 1.619561e-07	ci right 2.295096e-06	k: 3	n:3820000
ZNF395   3820000 perm   7009 sec   (545 perm/sec)   p_kst 7.853403e-07   p_cons 7.635641e-01   p_joint 3.664921e-06

Joint ci ratio: 1.012138e+00	ci left: 1.998417e-06	ci right 6.133053e-06	k: 14	n:3830000
Cons ci ratio: 1.114642e-03	ci left: 7.631258e-01	ci right 7.639772e-01	k: 2924403	n:3830000
KS ci ratio: 1.959999e+00	ci left: 1.615332e-07	ci right 2.289104e-06	k: 3	n:3830000
ZNF395   3830000 perm   7043 sec   (544 perm/sec)   p_kst 7.832898e-07   p_cons 7.635517e-01   p_joint 3.655352e-06

Joint ci ratio: 1.012138e+00	ci left: 1.993212e-06	ci right 6.117081e-06	k: 14	n:3840000
Cons ci ratio: 1.113162e-03	ci left: 7.631356e-01	ci right 7.639858e-01	k: 2932074	n:3840000
KS ci ratio: 1.959999e+00	ci left: 1.611126e-07	ci right 2.283142e-06	k: 3	n:3840000
ZNF395   3840000 perm   7078 sec   (543 perm/sec)   p_kst 7.812500e-07   p_cons 7.635609e-01   p_joint 3.645833e-06

Joint ci ratio: 1.012138e+00	ci left: 1.988035e-06	ci right 6.101193e-06	k: 14	n:3850000
Cons ci ratio: 1.111779e-03	ci left: 7.631152e-01	ci right 7.639644e-01	k: 2939629	n:3850000
KS ci ratio: 1.959999e+00	ci left: 1.606941e-07	ci right 2.277212e-06	k: 3	n:3850000
ZNF395   3850000 perm   7113 sec   (541 perm/sec)   p_kst 7.792208e-07   p_cons 7.635400e-01   p_joint 3.636364e-06

Joint ci ratio: 1.012138e+00	ci left: 1.982885e-06	ci right 6.085387e-06	k: 14	n:3860000
Cons ci ratio: 1.110378e-03	ci left: 7.631030e-01	ci right 7.639510e-01	k: 2947215	n:3860000
KS ci ratio: 1.959999e+00	ci left: 1.602778e-07	ci right 2.271313e-06	k: 3	n:3860000
ZNF395   3860000 perm   7149 sec   (540 perm/sec)   p_kst 7.772021e-07   p_cons 7.635272e-01   p_joint 3.626943e-06

Joint ci ratio: 1.012138e+00	ci left: 1.977761e-06	ci right 6.069662e-06	k: 14	n:3870000
Cons ci ratio: 1.108964e-03	ci left: 7.630965e-01	ci right 7.639434e-01	k: 2954823	n:3870000
KS ci ratio: 1.959999e+00	ci left: 1.598636e-07	ci right 2.265444e-06	k: 3	n:3870000
ZNF395   3870000 perm   7184 sec   (539 perm/sec)   p_kst 7.751938e-07   p_cons 7.635202e-01   p_joint 3.617571e-06

Joint ci ratio: 1.012138e+00	ci left: 1.972664e-06	ci right 6.054019e-06	k: 14	n:3880000
Cons ci ratio: 1.107571e-03	ci left: 7.630849e-01	ci right 7.639307e-01	k: 2962411	n:3880000
KS ci ratio: 1.959999e+00	ci left: 1.594516e-07	ci right 2.259605e-06	k: 3	n:3880000
ZNF395   3880000 perm   7219 sec   (538 perm/sec)   p_kst 7.731959e-07   p_cons 7.635080e-01   p_joint 3.608247e-06

Joint ci ratio: 1.306665e+00	ci left: 8.878750e-07	ci right 4.052230e-06	k: 8	n:3890000
Cons ci ratio: 1.106169e-03	ci left: 7.630782e-01	ci right 7.639230e-01	k: 2970018	n:3890000
KS ci ratio: 1.959999e+00	ci left: 1.590417e-07	ci right 2.253796e-06	k: 3	n:3890000
ZNF395   3890000 perm   7254 sec   (536 perm/sec)   p_kst 7.712082e-07   p_cons 7.635008e-01   p_joint 2.056555e-06

Joint ci ratio: 1.306665e+00	ci left: 8.855984e-07	ci right 4.041839e-06	k: 8	n:3900000
Cons ci ratio: 1.104678e-03	ci left: 7.631023e-01	ci right 7.639460e-01	k: 2977745	n:3900000
KS ci ratio: 1.959999e+00	ci left: 1.586339e-07	ci right 2.248017e-06	k: 3	n:3900000
ZNF395   3900000 perm   7289 sec   (535 perm/sec)   p_kst 7.692308e-07   p_cons 7.635244e-01   p_joint 2.051282e-06

Joint ci ratio: 1.306665e+00	ci left: 8.833334e-07	ci right 4.031502e-06	k: 8	n:3910000
Cons ci ratio: 1.103245e-03	ci left: 7.631092e-01	ci right 7.639518e-01	k: 2985405	n:3910000
KS ci ratio: 1.959999e+00	ci left: 1.582282e-07	ci right 2.242268e-06	k: 3	n:3910000
ZNF395   3910000 perm   7324 sec   (534 perm/sec)   p_kst 7.672634e-07   p_cons 7.635307e-01   p_joint 2.046036e-06

Joint ci ratio: 1.306665e+00	ci left: 8.810800e-07	ci right 4.021218e-06	k: 8	n:3920000
Cons ci ratio: 1.101806e-03	ci left: 7.631199e-01	ci right 7.639614e-01	k: 2993080	n:3920000
KS ci ratio: 1.959999e+00	ci left: 1.578245e-07	ci right 2.236548e-06	k: 3	n:3920000
ZNF395   3920000 perm   7360 sec   (533 perm/sec)   p_kst 7.653061e-07   p_cons 7.635408e-01   p_joint 2.040816e-06

Joint ci ratio: 1.306665e+00	ci left: 8.788381e-07	ci right 4.010986e-06	k: 8	n:3930000
Cons ci ratio: 1.100410e-03	ci left: 7.631180e-01	ci right 7.639585e-01	k: 3000706	n:3930000
KS ci ratio: 1.959999e+00	ci left: 1.574230e-07	ci right 2.230857e-06	k: 3	n:3930000
ZNF395   3930000 perm   7395 sec   (531 perm/sec)   p_kst 7.633588e-07   p_cons 7.635384e-01   p_joint 2.035623e-06

Joint ci ratio: 1.306665e+00	ci left: 8.766075e-07	ci right 4.000806e-06	k: 8	n:3940000
Cons ci ratio: 1.099039e-03	ci left: 7.631098e-01	ci right 7.639492e-01	k: 3008307	n:3940000
KS ci ratio: 1.959999e+00	ci left: 1.570234e-07	ci right 2.225195e-06	k: 3	n:3940000
ZNF395   3940000 perm   7430 sec   (530 perm/sec)   p_kst 7.614213e-07   p_cons 7.635297e-01   p_joint 2.030457e-06

Joint ci ratio: 1.306665e+00	ci left: 8.743883e-07	ci right 3.990677e-06	k: 8	n:3950000
Cons ci ratio: 1.097626e-03	ci left: 7.631174e-01	ci right 7.639557e-01	k: 3015970	n:3950000
KS ci ratio: 1.959999e+00	ci left: 1.566259e-07	ci right 2.219561e-06	k: 3	n:3950000
ZNF395   3950000 perm   7466 sec   (529 perm/sec)   p_kst 7.594937e-07   p_cons 7.635367e-01   p_joint 2.025316e-06

Joint ci ratio: 1.306665e+00	ci left: 8.721802e-07	ci right 3.980599e-06	k: 8	n:3960000
Cons ci ratio: 1.096236e-03	ci left: 7.631191e-01	ci right 7.639563e-01	k: 3023610	n:3960000
KS ci ratio: 1.959999e+00	ci left: 1.562304e-07	ci right 2.213956e-06	k: 3	n:3960000
ZNF395   3960000 perm   7502 sec   (528 perm/sec)   p_kst 7.575758e-07   p_cons 7.635379e-01   p_joint 2.020202e-06

Joint ci ratio: 1.306665e+00	ci left: 8.699833e-07	ci right 3.970573e-06	k: 8	n:3970000
Cons ci ratio: 1.094842e-03	ci left: 7.631235e-01	ci right 7.639597e-01	k: 3031261	n:3970000
KS ci ratio: 1.959999e+00	ci left: 1.558368e-07	ci right 2.208380e-06	k: 3	n:3970000
ZNF395   3970000 perm   7538 sec   (527 perm/sec)   p_kst 7.556675e-07   p_cons 7.635418e-01   p_joint 2.015113e-06

Joint ci ratio: 1.306665e+00	ci left: 8.677974e-07	ci right 3.960596e-06	k: 8	n:3980000
Cons ci ratio: 1.093501e-03	ci left: 7.631124e-01	ci right 7.639475e-01	k: 3038850	n:3980000
KS ci ratio: 1.959999e+00	ci left: 1.554453e-07	ci right 2.202831e-06	k: 3	n:3980000
ZNF395   3980000 perm   7574 sec   (525 perm/sec)   p_kst 7.537688e-07   p_cons 7.635302e-01   p_joint 2.010050e-06

Joint ci ratio: 1.306665e+00	ci left: 8.656225e-07	ci right 3.950670e-06	k: 8	n:3990000
Cons ci ratio: 1.092150e-03	ci left: 7.631063e-01	ci right 7.639404e-01	k: 3046459	n:3990000
KS ci ratio: 1.959999e+00	ci left: 1.550557e-07	ci right 2.197310e-06	k: 3	n:3990000
ZNF395   3990000 perm   7610 sec   (524 perm/sec)   p_kst 7.518797e-07   p_cons 7.635236e-01   p_joint 2.005013e-06

Joint ci ratio: 1.306665e+00	ci left: 8.634584e-07	ci right 3.940793e-06	k: 8	n:4000000
Cons ci ratio: 1.090752e-03	ci left: 7.631175e-01	ci right 7.639506e-01	k: 3054137	n:4000000
KS ci ratio: 1.959999e+00	ci left: 1.546681e-07	ci right 2.191817e-06	k: 3	n:4000000
ZNF395   4000000 perm   7647 sec   (523 perm/sec)   p_kst 7.500000e-07   p_cons 7.635342e-01   p_joint 2.000000e-06

Joint ci ratio: 1.306665e+00	ci left: 8.613052e-07	ci right 3.930966e-06	k: 8	n:4010000
Cons ci ratio: 1.089398e-03	ci left: 7.631157e-01	ci right 7.639477e-01	k: 3061763	n:4010000
KS ci ratio: 1.959999e+00	ci left: 1.542824e-07	ci right 2.186351e-06	k: 3	n:4010000
ZNF395   4010000 perm   7683 sec   (522 perm/sec)   p_kst 7.481297e-07   p_cons 7.635319e-01   p_joint 1.995012e-06

Joint ci ratio: 1.306665e+00	ci left: 8.591626e-07	ci right 3.921188e-06	k: 8	n:4020000
Cons ci ratio: 1.088073e-03	ci left: 7.631060e-01	ci right 7.639370e-01	k: 3069357	n:4020000
KS ci ratio: 1.959999e+00	ci left: 1.538986e-07	ci right 2.180912e-06	k: 3	n:4020000
ZNF395   4020000 perm   7719 sec   (521 perm/sec)   p_kst 7.462687e-07   p_cons 7.635216e-01   p_joint 1.990050e-06

Joint ci ratio: 1.306665e+00	ci left: 8.570307e-07	ci right 3.911458e-06	k: 8	n:4030000
Cons ci ratio: 1.086762e-03	ci left: 7.630933e-01	ci right 7.639232e-01	k: 3076939	n:4030000
KS ci ratio: 1.959999e+00	ci left: 1.535167e-07	ci right 2.175500e-06	k: 3	n:4030000
ZNF395   4030000 perm   7755 sec   (520 perm/sec)   p_kst 7.444169e-07   p_cons 7.635084e-01   p_joint 1.985112e-06

Joint ci ratio: 1.306665e+00	ci left: 8.549093e-07	ci right 3.901776e-06	k: 8	n:4040000
Cons ci ratio: 1.085442e-03	ci left: 7.630853e-01	ci right 7.639143e-01	k: 3084540	n:4040000
KS ci ratio: 1.959999e+00	ci left: 1.531367e-07	ci right 2.170116e-06	k: 3	n:4040000
ZNF395   4040000 perm   7791 sec   (519 perm/sec)   p_kst 7.425743e-07   p_cons 7.635000e-01   p_joint 1.980198e-06

Joint ci ratio: 1.306665e+00	ci left: 8.527984e-07	ci right 3.892142e-06	k: 8	n:4050000
Cons ci ratio: 1.084070e-03	ci left: 7.630960e-01	ci right 7.639239e-01	k: 3092216	n:4050000
KS ci ratio: 1.959999e+00	ci left: 1.527586e-07	ci right 2.164757e-06	k: 3	n:4050000
ZNF395   4050000 perm   7829 sec   (517 perm/sec)   p_kst 7.407407e-07   p_cons 7.635101e-01   p_joint 1.975309e-06

Joint ci ratio: 1.306665e+00	ci left: 8.506980e-07	ci right 3.882555e-06	k: 8	n:4060000
Cons ci ratio: 1.082711e-03	ci left: 7.631043e-01	ci right 7.639312e-01	k: 3099883	n:4060000
KS ci ratio: 1.959999e+00	ci left: 1.523823e-07	ci right 2.159425e-06	k: 3	n:4060000
ZNF395   4060000 perm   7866 sec   (516 perm/sec)   p_kst 7.389163e-07   p_cons 7.635180e-01   p_joint 1.970443e-06

Joint ci ratio: 1.306665e+00	ci left: 8.486078e-07	ci right 3.873016e-06	k: 8	n:4070000
Cons ci ratio: 1.081364e-03	ci left: 7.631102e-01	ci right 7.639361e-01	k: 3107540	n:4070000
KS ci ratio: 1.959999e+00	ci left: 1.520079e-07	ci right 2.154120e-06	k: 3	n:4070000
ZNF395   4070000 perm   7903 sec   (515 perm/sec)   p_kst 7.371007e-07   p_cons 7.635233e-01   p_joint 1.965602e-06

Joint ci ratio: 1.306665e+00	ci left: 8.465279e-07	ci right 3.863523e-06	k: 8	n:4080000
Cons ci ratio: 1.080006e-03	ci left: 7.631215e-01	ci right 7.639463e-01	k: 3115219	n:4080000
KS ci ratio: 1.959999e+00	ci left: 1.516353e-07	ci right 2.148840e-06	k: 3	n:4080000
ZNF395   4080000 perm   7941 sec   (514 perm/sec)   p_kst 7.352941e-07   p_cons 7.635341e-01   p_joint 1.960784e-06

Joint ci ratio: 1.306665e+00	ci left: 8.444581e-07	ci right 3.854077e-06	k: 8	n:4090000
Cons ci ratio: 1.078678e-03	ci left: 7.631241e-01	ci right 7.639479e-01	k: 3122863	n:4090000
KS ci ratio: 1.959999e+00	ci left: 1.512646e-07	ci right 2.143586e-06	k: 3	n:4090000
ZNF395   4090000 perm   7978 sec   (513 perm/sec)   p_kst 7.334963e-07   p_cons 7.635362e-01   p_joint 1.955990e-06

Joint ci ratio: 1.306665e+00	ci left: 8.423985e-07	ci right 3.844677e-06	k: 8	n:4100000
Cons ci ratio: 1.077329e-03	ci left: 7.631357e-01	ci right 7.639585e-01	k: 3130544	n:4100000
KS ci ratio: 1.959999e+00	ci left: 1.508957e-07	ci right 2.138358e-06	k: 3	n:4100000
ZNF395   4100000 perm   8016 sec   (511 perm/sec)   p_kst 7.317073e-07   p_cons 7.635473e-01   p_joint 1.951220e-06

Joint ci ratio: 1.306665e+00	ci left: 8.403488e-07	ci right 3.835322e-06	k: 8	n:4110000
Cons ci ratio: 1.076010e-03	ci left: 7.631388e-01	ci right 7.639606e-01	k: 3138190	n:4110000
KS ci ratio: 1.959999e+00	ci left: 1.505285e-07	ci right 2.133155e-06	k: 3	n:4110000
ZNF395   4110000 perm   8054 sec   (510 perm/sec)   p_kst 7.299270e-07   p_cons 7.635499e-01   p_joint 1.946472e-06

Joint ci ratio: 1.306665e+00	ci left: 8.383091e-07	ci right 3.826013e-06	k: 8	n:4120000
Cons ci ratio: 1.074701e-03	ci left: 7.631401e-01	ci right 7.639610e-01	k: 3145829	n:4120000
KS ci ratio: 1.959999e+00	ci left: 1.501632e-07	ci right 2.127977e-06	k: 3	n:4120000
ZNF395   4120000 perm   8091 sec   (509 perm/sec)   p_kst 7.281553e-07   p_cons 7.635507e-01   p_joint 1.941748e-06

Joint ci ratio: 1.306665e+00	ci left: 8.362793e-07	ci right 3.816749e-06	k: 8	n:4130000
Cons ci ratio: 1.073404e-03	ci left: 7.631388e-01	ci right 7.639586e-01	k: 3153457	n:4130000
KS ci ratio: 1.959999e+00	ci left: 1.497996e-07	ci right 2.122825e-06	k: 3	n:4130000
ZNF395   4130000 perm   8129 sec   (508 perm/sec)   p_kst 7.263923e-07   p_cons 7.635489e-01   p_joint 1.937046e-06

Joint ci ratio: 1.306665e+00	ci left: 8.342593e-07	ci right 3.807530e-06	k: 8	n:4140000
Cons ci ratio: 1.072109e-03	ci left: 7.631387e-01	ci right 7.639575e-01	k: 3161090	n:4140000
KS ci ratio: 1.959999e+00	ci left: 1.494377e-07	ci right 2.117697e-06	k: 3	n:4140000
ZNF395   4140000 perm   8167 sec   (507 perm/sec)   p_kst 7.246377e-07   p_cons 7.635483e-01   p_joint 1.932367e-06

Joint ci ratio: 1.306665e+00	ci left: 8.322491e-07	ci right 3.798355e-06	k: 8	n:4150000
Cons ci ratio: 1.070795e-03	ci left: 7.631463e-01	ci right 7.639642e-01	k: 3168755	n:4150000
KS ci ratio: 1.959999e+00	ci left: 1.490776e-07	ci right 2.112594e-06	k: 3	n:4150000
ZNF395   4150000 perm   8204 sec   (506 perm/sec)   p_kst 7.228916e-07   p_cons 7.635554e-01   p_joint 1.927711e-06

Joint ci ratio: 1.306665e+00	ci left: 8.302485e-07	ci right 3.789225e-06	k: 8	n:4160000
Cons ci ratio: 1.069486e-03	ci left: 7.631539e-01	ci right 7.639707e-01	k: 3176420	n:4160000
KS ci ratio: 1.959999e+00	ci left: 1.487193e-07	ci right 2.107516e-06	k: 3	n:4160000
ZNF395   4160000 perm   8242 sec   (505 perm/sec)   p_kst 7.211538e-07   p_cons 7.635625e-01   p_joint 1.923077e-06

Joint ci ratio: 1.306665e+00	ci left: 8.282575e-07	ci right 3.780138e-06	k: 8	n:4170000
Cons ci ratio: 1.068209e-03	ci left: 7.631523e-01	ci right 7.639682e-01	k: 3184047	n:4170000
KS ci ratio: 1.959999e+00	ci left: 1.483626e-07	ci right 2.102462e-06	k: 3	n:4170000
ZNF395   4170000 perm   8280 sec   (504 perm/sec)   p_kst 7.194245e-07   p_cons 7.635604e-01   p_joint 1.918465e-06

Joint ci ratio: 1.306665e+00	ci left: 8.262760e-07	ci right 3.771094e-06	k: 8	n:4180000
Cons ci ratio: 1.066950e-03	ci left: 7.631464e-01	ci right 7.639613e-01	k: 3191656	n:4180000
KS ci ratio: 1.959999e+00	ci left: 1.480077e-07	ci right 2.097432e-06	k: 3	n:4180000
ZNF395   4180000 perm   8320 sec   (502 perm/sec)   p_kst 7.177033e-07   p_cons 7.635541e-01   p_joint 1.913876e-06

Joint ci ratio: 1.306665e+00	ci left: 8.243040e-07	ci right 3.762094e-06	k: 8	n:4190000
Cons ci ratio: 1.065624e-03	ci left: 7.631645e-01	ci right 7.639784e-01	k: 3199365	n:4190000
KS ci ratio: 1.959999e+00	ci left: 1.476545e-07	ci right 2.092427e-06	k: 3	n:4190000
ZNF395   4190000 perm   8359 sec   (501 perm/sec)   p_kst 7.159905e-07   p_cons 7.635716e-01   p_joint 1.909308e-06

Joint ci ratio: 1.306665e+00	ci left: 8.223413e-07	ci right 3.753137e-06	k: 8	n:4200000
Cons ci ratio: 1.064366e-03	ci left: 7.631610e-01	ci right 7.639739e-01	k: 3206984	n:4200000
KS ci ratio: 1.959999e+00	ci left: 1.473029e-07	ci right 2.087445e-06	k: 3	n:4200000
ZNF395   4200000 perm   8397 sec   (500 perm/sec)   p_kst 7.142857e-07   p_cons 7.635676e-01   p_joint 1.904762e-06

Joint ci ratio: 1.306665e+00	ci left: 8.203880e-07	ci right 3.744222e-06	k: 8	n:4210000
Cons ci ratio: 1.063073e-03	ci left: 7.631713e-01	ci right 7.639832e-01	k: 3214661	n:4210000
KS ci ratio: 1.959999e+00	ci left: 1.469530e-07	ci right 2.082486e-06	k: 3	n:4210000
ZNF395   4210000 perm   8436 sec   (499 perm/sec)   p_kst 7.125891e-07   p_cons 7.635774e-01   p_joint 1.900238e-06

Joint ci ratio: 1.306665e+00	ci left: 8.184440e-07	ci right 3.735349e-06	k: 8	n:4220000
Cons ci ratio: 1.061784e-03	ci left: 7.631813e-01	ci right 7.639923e-01	k: 3222337	n:4220000
KS ci ratio: 1.959999e+00	ci left: 1.466048e-07	ci right 2.077551e-06	k: 3	n:4220000
ZNF395   4220000 perm   8475 sec   (498 perm/sec)   p_kst 7.109005e-07   p_cons 7.635870e-01   p_joint 1.895735e-06

Joint ci ratio: 1.306665e+00	ci left: 8.165091e-07	ci right 3.726519e-06	k: 8	n:4230000
Cons ci ratio: 1.060553e-03	ci left: 7.631735e-01	ci right 7.639836e-01	k: 3229938	n:4230000
KS ci ratio: 1.959999e+00	ci left: 1.462582e-07	ci right 2.072640e-06	k: 3	n:4230000
ZNF395   4230000 perm   8513 sec   (497 perm/sec)   p_kst 7.092199e-07   p_cons 7.635787e-01   p_joint 1.891253e-06

Joint ci ratio: 1.306665e+00	ci left: 8.145834e-07	ci right 3.717730e-06	k: 8	n:4240000
Cons ci ratio: 1.059341e-03	ci left: 7.631606e-01	ci right 7.639697e-01	k: 3237517	n:4240000
KS ci ratio: 1.959999e+00	ci left: 1.459133e-07	ci right 2.067752e-06	k: 3	n:4240000
ZNF395   4240000 perm   8552 sec   (496 perm/sec)   p_kst 7.075472e-07   p_cons 7.635653e-01   p_joint 1.886792e-06

Joint ci ratio: 1.306665e+00	ci left: 8.126667e-07	ci right 3.708982e-06	k: 8	n:4250000
Cons ci ratio: 1.058047e-03	ci left: 7.631769e-01	ci right 7.639851e-01	k: 3245220	n:4250000
KS ci ratio: 1.959999e+00	ci left: 1.455699e-07	ci right 2.062886e-06	k: 3	n:4250000
ZNF395   4250000 perm   8591 sec   (495 perm/sec)   p_kst 7.058824e-07   p_cons 7.635812e-01   p_joint 1.882353e-06

Joint ci ratio: 1.306665e+00	ci left: 8.107591e-07	ci right 3.700276e-06	k: 8	n:4260000
Cons ci ratio: 1.056767e-03	ci left: 7.631901e-01	ci right 7.639973e-01	k: 3252910	n:4260000
KS ci ratio: 1.959999e+00	ci left: 1.452282e-07	ci right 2.058044e-06	k: 3	n:4260000
ZNF395   4260000 perm   8630 sec   (494 perm/sec)   p_kst 7.042254e-07   p_cons 7.635939e-01   p_joint 1.877934e-06

Joint ci ratio: 1.306665e+00	ci left: 8.088603e-07	ci right 3.691610e-06	k: 8	n:4270000
Cons ci ratio: 1.055526e-03	ci left: 7.631916e-01	ci right 7.639978e-01	k: 3260550	n:4270000
KS ci ratio: 1.959999e+00	ci left: 1.448881e-07	ci right 2.053224e-06	k: 3	n:4270000
ZNF395   4270000 perm   8669 sec   (493 perm/sec)   p_kst 7.025761e-07   p_cons 7.635948e-01   p_joint 1.873536e-06

Joint ci ratio: 1.306665e+00	ci left: 8.069705e-07	ci right 3.682985e-06	k: 8	n:4280000
Cons ci ratio: 1.054327e-03	ci left: 7.631801e-01	ci right 7.639854e-01	k: 3268135	n:4280000
KS ci ratio: 1.959999e+00	ci left: 1.445496e-07	ci right 2.048427e-06	k: 3	n:4280000
ZNF395   4280000 perm   8707 sec   (492 perm/sec)   p_kst 7.009346e-07   p_cons 7.635829e-01   p_joint 1.869159e-06

Joint ci ratio: 1.306665e+00	ci left: 8.050894e-07	ci right 3.674400e-06	k: 8	n:4290000
Cons ci ratio: 1.053022e-03	ci left: 7.632068e-01	ci right 7.640111e-01	k: 3275883	n:4290000
KS ci ratio: 1.959999e+00	ci left: 1.442126e-07	ci right 2.043652e-06	k: 3	n:4290000
ZNF395   4290000 perm   8746 sec   (491 perm/sec)   p_kst 6.993007e-07   p_cons 7.636091e-01   p_joint 1.864802e-06

Joint ci ratio: 1.306665e+00	ci left: 8.032171e-07	ci right 3.665855e-06	k: 8	n:4300000
Cons ci ratio: 1.051767e-03	ci left: 7.632174e-01	ci right 7.640208e-01	k: 3283563	n:4300000
KS ci ratio: 1.959999e+00	ci left: 1.438773e-07	ci right 2.038899e-06	k: 3	n:4300000
ZNF395   4300000 perm   8786 sec   (489 perm/sec)   p_kst 6.976744e-07   p_cons 7.636193e-01   p_joint 1.860465e-06

Joint ci ratio: 1.306665e+00	ci left: 8.013535e-07	ci right 3.657349e-06	k: 8	n:4310000
Cons ci ratio: 1.050484e-03	ci left: 7.632390e-01	ci right 7.640414e-01	k: 3291290	n:4310000
KS ci ratio: 1.959999e+00	ci left: 1.435434e-07	ci right 2.034169e-06	k: 3	n:4310000
ZNF395   4310000 perm   8826 sec   (488 perm/sec)   p_kst 6.960557e-07   p_cons 7.636404e-01   p_joint 1.856148e-06

Joint ci ratio: 1.306665e+00	ci left: 7.994985e-07	ci right 3.648883e-06	k: 8	n:4320000
Cons ci ratio: 1.049265e-03	ci left: 7.632405e-01	ci right 7.640420e-01	k: 3298931	n:4320000
KS ci ratio: 1.959999e+00	ci left: 1.432112e-07	ci right 2.029460e-06	k: 3	n:4320000
ZNF395   4320000 perm   8865 sec   (487 perm/sec)   p_kst 6.944444e-07   p_cons 7.636414e-01   p_joint 1.851852e-06

Joint ci ratio: 1.306665e+00	ci left: 7.976521e-07	ci right 3.640456e-06	k: 8	n:4330000
Cons ci ratio: 1.048047e-03	ci left: 7.632430e-01	ci right 7.640435e-01	k: 3306576	n:4330000
KS ci ratio: 1.959999e+00	ci left: 1.428804e-07	ci right 2.024773e-06	k: 3	n:4330000
ZNF395   4330000 perm   8907 sec   (486 perm/sec)   p_kst 6.928406e-07   p_cons 7.636434e-01   p_joint 1.847575e-06

Joint ci ratio: 1.306665e+00	ci left: 7.958142e-07	ci right 3.632068e-06	k: 8	n:4340000
Cons ci ratio: 1.046835e-03	ci left: 7.632447e-01	ci right 7.640443e-01	k: 3314218	n:4340000
KS ci ratio: 1.959999e+00	ci left: 1.425512e-07	ci right 2.020108e-06	k: 3	n:4340000
ZNF395   4340000 perm   8949 sec   (485 perm/sec)   p_kst 6.912442e-07   p_cons 7.636447e-01   p_joint 1.843318e-06

Joint ci ratio: 1.306665e+00	ci left: 7.939847e-07	ci right 3.623718e-06	k: 8	n:4350000
Cons ci ratio: 1.045633e-03	ci left: 7.632446e-01	ci right 7.640433e-01	k: 3321852	n:4350000
KS ci ratio: 1.959999e+00	ci left: 1.422235e-07	ci right 2.015464e-06	k: 3	n:4350000
ZNF395   4350000 perm   8989 sec   (484 perm/sec)   p_kst 6.896552e-07   p_cons 7.636441e-01   p_joint 1.839080e-06

Joint ci ratio: 1.306665e+00	ci left: 7.921637e-07	ci right 3.615407e-06	k: 8	n:4360000
Cons ci ratio: 1.044431e-03	ci left: 7.632457e-01	ci right 7.640434e-01	k: 3329491	n:4360000
KS ci ratio: 1.959999e+00	ci left: 1.418973e-07	ci right 2.010841e-06	k: 3	n:4360000
ZNF395   4360000 perm   9028 sec   (483 perm/sec)   p_kst 6.880734e-07   p_cons 7.636447e-01   p_joint 1.834862e-06

Joint ci ratio: 1.306665e+00	ci left: 7.903509e-07	ci right 3.607134e-06	k: 8	n:4370000
Cons ci ratio: 1.043218e-03	ci left: 7.632522e-01	ci right 7.640491e-01	k: 3337154	n:4370000
KS ci ratio: 1.959999e+00	ci left: 1.415726e-07	ci right 2.006240e-06	k: 3	n:4370000
ZNF395   4370000 perm   9070 sec   (482 perm/sec)   p_kst 6.864989e-07   p_cons 7.636508e-01   p_joint 1.830664e-06

Joint ci ratio: 1.306665e+00	ci left: 7.885465e-07	ci right 3.598898e-06	k: 8	n:4380000
Cons ci ratio: 1.042053e-03	ci left: 7.632434e-01	ci right 7.640394e-01	k: 3344750	n:4380000
KS ci ratio: 1.959999e+00	ci left: 1.412494e-07	ci right 2.001659e-06	k: 3	n:4380000
ZNF395   4380000 perm   9109 sec   (481 perm/sec)   p_kst 6.849315e-07   p_cons 7.636416e-01   p_joint 1.826484e-06

Joint ci ratio: 1.239611e+00	ci left: 9.374430e-07	ci right 3.891751e-06	k: 9	n:4390000
Cons ci ratio: 1.040888e-03	ci left: 7.632360e-01	ci right 7.640311e-01	k: 3352352	n:4390000
KS ci ratio: 1.959999e+00	ci left: 1.409276e-07	ci right 1.997100e-06	k: 3	n:4390000
ZNF395   4390000 perm   9150 sec   (480 perm/sec)   p_kst 6.833713e-07   p_cons 7.636337e-01   p_joint 2.050114e-06

Joint ci ratio: 1.239611e+00	ci left: 9.353125e-07	ci right 3.882906e-06	k: 9	n:4400000
Cons ci ratio: 1.039732e-03	ci left: 7.632268e-01	ci right 7.640210e-01	k: 3359946	n:4400000
KS ci ratio: 1.959999e+00	ci left: 1.406073e-07	ci right 1.992561e-06	k: 3	n:4400000
ZNF395   4400000 perm   9195 sec   (479 perm/sec)   p_kst 6.818182e-07   p_cons 7.636241e-01   p_joint 2.045455e-06

Joint ci ratio: 1.239611e+00	ci left: 9.331916e-07	ci right 3.874102e-06	k: 9	n:4410000
Cons ci ratio: 1.038534e-03	ci left: 7.632338e-01	ci right 7.640271e-01	k: 3367611	n:4410000
KS ci ratio: 1.959999e+00	ci left: 1.402885e-07	ci right 1.988042e-06	k: 3	n:4410000
ZNF395   4410000 perm   9236 sec   (477 perm/sec)   p_kst 6.802721e-07   p_cons 7.636306e-01   p_joint 2.040816e-06

Joint ci ratio: 1.239611e+00	ci left: 9.310803e-07	ci right 3.865337e-06	k: 9	n:4420000
Cons ci ratio: 1.037335e-03	ci left: 7.632426e-01	ci right 7.640349e-01	k: 3375284	n:4420000
KS ci ratio: 1.959999e+00	ci left: 1.399711e-07	ci right 1.983545e-06	k: 3	n:4420000
ZNF395   4420000 perm   9276 sec   (476 perm/sec)   p_kst 6.787330e-07   p_cons 7.636389e-01   p_joint 2.036199e-06

Joint ci ratio: 1.239611e+00	ci left: 9.289785e-07	ci right 3.856611e-06	k: 9	n:4430000
Cons ci ratio: 1.036169e-03	ci left: 7.632411e-01	ci right 7.640326e-01	k: 3382912	n:4430000
KS ci ratio: 1.959999e+00	ci left: 1.396551e-07	ci right 1.979067e-06	k: 3	n:4430000
ZNF395   4430000 perm   9319 sec   (475 perm/sec)   p_kst 6.772009e-07   p_cons 7.636370e-01   p_joint 2.031603e-06

Joint ci ratio: 1.239611e+00	ci left: 9.268862e-07	ci right 3.847925e-06	k: 9	n:4440000
Cons ci ratio: 1.034997e-03	ci left: 7.632431e-01	ci right 7.640336e-01	k: 3390555	n:4440000
KS ci ratio: 1.959999e+00	ci left: 1.393406e-07	ci right 1.974610e-06	k: 3	n:4440000
ZNF395   4440000 perm   9365 sec   (474 perm/sec)   p_kst 6.756757e-07   p_cons 7.636385e-01   p_joint 2.027027e-06

Joint ci ratio: 1.239611e+00	ci left: 9.248033e-07	ci right 3.839278e-06	k: 9	n:4450000
Cons ci ratio: 1.033790e-03	ci left: 7.632587e-01	ci right 7.640484e-01	k: 3398259	n:4450000
KS ci ratio: 1.959999e+00	ci left: 1.390275e-07	ci right 1.970172e-06	k: 3	n:4450000
ZNF395   4450000 perm   9410 sec   (473 perm/sec)   p_kst 6.741573e-07   p_cons 7.636537e-01   p_joint 2.022472e-06

Joint ci ratio: 1.239611e+00	ci left: 9.227298e-07	ci right 3.830670e-06	k: 9	n:4460000
Cons ci ratio: 1.032686e-03	ci left: 7.632395e-01	ci right 7.640283e-01	k: 3405808	n:4460000
KS ci ratio: 1.959999e+00	ci left: 1.387157e-07	ci right 1.965755e-06	k: 3	n:4460000
ZNF395   4460000 perm   9453 sec   (472 perm/sec)   p_kst 6.726457e-07   p_cons 7.636341e-01   p_joint 2.017937e-06

Joint ci ratio: 1.239611e+00	ci left: 9.206655e-07	ci right 3.822100e-06	k: 9	n:4470000
Cons ci ratio: 1.031510e-03	ci left: 7.632473e-01	ci right 7.640352e-01	k: 3413477	n:4470000
KS ci ratio: 1.959999e+00	ci left: 1.384054e-07	ci right 1.961357e-06	k: 3	n:4470000
ZNF395   4470000 perm   9496 sec   (471 perm/sec)   p_kst 6.711409e-07   p_cons 7.636414e-01   p_joint 2.013423e-06

Joint ci ratio: 1.239611e+00	ci left: 9.186105e-07	ci right 3.813569e-06	k: 9	n:4480000
Cons ci ratio: 1.030352e-03	ci left: 7.632498e-01	ci right 7.640369e-01	k: 3421123	n:4480000
KS ci ratio: 1.959999e+00	ci left: 1.380965e-07	ci right 1.956979e-06	k: 3	n:4480000
ZNF395   4480000 perm   9539 sec   (470 perm/sec)   p_kst 6.696429e-07   p_cons 7.636435e-01   p_joint 2.008929e-06

Joint ci ratio: 1.181923e+00	ci left: 1.068016e-06	ci right 4.095844e-06	k: 10	n:4490000
Cons ci ratio: 1.029228e-03	ci left: 7.632417e-01	ci right 7.640279e-01	k: 3428721	n:4490000
KS ci ratio: 1.959999e+00	ci left: 1.377889e-07	ci right 1.952621e-06	k: 3	n:4490000
ZNF395   4490000 perm   9582 sec   (469 perm/sec)   p_kst 6.681514e-07   p_cons 7.636350e-01   p_joint 2.227171e-06

Joint ci ratio: 1.181923e+00	ci left: 1.065642e-06	ci right 4.086742e-06	k: 10	n:4500000
Cons ci ratio: 1.028094e-03	ci left: 7.632385e-01	ci right 7.640238e-01	k: 3436341	n:4500000
KS ci ratio: 1.959999e+00	ci left: 1.374827e-07	ci right 1.948282e-06	k: 3	n:4500000
ZNF395   4500000 perm   9626 sec   (467 perm/sec)   p_kst 6.666667e-07   p_cons 7.636313e-01   p_joint 2.222222e-06

Joint ci ratio: 1.181923e+00	ci left: 1.063280e-06	ci right 4.077680e-06	k: 10	n:4510000
Cons ci ratio: 1.026905e-03	ci left: 7.632560e-01	ci right 7.640404e-01	k: 3444054	n:4510000
KS ci ratio: 1.959999e+00	ci left: 1.371779e-07	ci right 1.943962e-06	k: 3	n:4510000
ZNF395   4510000 perm   9667 sec   (467 perm/sec)   p_kst 6.651885e-07   p_cons 7.636483e-01   p_joint 2.217295e-06

Joint ci ratio: 1.181923e+00	ci left: 1.060927e-06	ci right 4.068659e-06	k: 10	n:4520000
Cons ci ratio: 1.025716e-03	ci left: 7.632751e-01	ci right 7.640586e-01	k: 3451775	n:4520000
KS ci ratio: 1.959999e+00	ci left: 1.368744e-07	ci right 1.939661e-06	k: 3	n:4520000
ZNF395   4520000 perm   9713 sec   (465 perm/sec)   p_kst 6.637168e-07   p_cons 7.636670e-01   p_joint 2.212389e-06

Joint ci ratio: 1.181923e+00	ci left: 1.058585e-06	ci right 4.059677e-06	k: 10	n:4530000
Cons ci ratio: 1.024562e-03	ci left: 7.632829e-01	ci right 7.640655e-01	k: 3459445	n:4530000
KS ci ratio: 1.959999e+00	ci left: 1.365722e-07	ci right 1.935379e-06	k: 3	n:4530000
ZNF395   4530000 perm   9758 sec   (464 perm/sec)   p_kst 6.622517e-07   p_cons 7.636744e-01   p_joint 2.207506e-06

Joint ci ratio: 1.181923e+00	ci left: 1.056254e-06	ci right 4.050735e-06	k: 10	n:4540000
Cons ci ratio: 1.023391e-03	ci left: 7.632982e-01	ci right 7.640799e-01	k: 3467149	n:4540000
KS ci ratio: 1.959999e+00	ci left: 1.362714e-07	ci right 1.931116e-06	k: 3	n:4540000
ZNF395   4540000 perm   9798 sec   (463 perm/sec)   p_kst 6.607930e-07   p_cons 7.636892e-01   p_joint 2.202643e-06

Joint ci ratio: 1.181923e+00	ci left: 1.053932e-06	ci right 4.041833e-06	k: 10	n:4550000
Cons ci ratio: 1.022255e-03	ci left: 7.633024e-01	ci right 7.640832e-01	k: 3474803	n:4550000
KS ci ratio: 1.959999e+00	ci left: 1.359719e-07	ci right 1.926872e-06	k: 3	n:4550000
ZNF395   4550000 perm   9845 sec   (462 perm/sec)   p_kst 6.593407e-07   p_cons 7.636930e-01   p_joint 2.197802e-06

Joint ci ratio: 1.181923e+00	ci left: 1.051621e-06	ci right 4.032969e-06	k: 10	n:4560000
Cons ci ratio: 1.021154e-03	ci left: 7.632956e-01	ci right 7.640756e-01	k: 3482407	n:4560000
KS ci ratio: 1.959999e+00	ci left: 1.356737e-07	ci right 1.922646e-06	k: 3	n:4560000
ZNF395   4560000 perm   9888 sec   (461 perm/sec)   p_kst 6.578947e-07   p_cons 7.636857e-01   p_joint 2.192982e-06

Joint ci ratio: 1.181923e+00	ci left: 1.049320e-06	ci right 4.024144e-06	k: 10	n:4570000
Cons ci ratio: 1.020011e-03	ci left: 7.633050e-01	ci right 7.640842e-01	k: 3490085	n:4570000
KS ci ratio: 1.959999e+00	ci left: 1.353769e-07	ci right 1.918439e-06	k: 3	n:4570000
ZNF395   4570000 perm   9930 sec   (460 perm/sec)   p_kst 6.564551e-07   p_cons 7.636947e-01   p_joint 2.188184e-06

Joint ci ratio: 1.181923e+00	ci left: 1.047029e-06	ci right 4.015358e-06	k: 10	n:4580000
Cons ci ratio: 1.018885e-03	ci left: 7.633096e-01	ci right 7.640879e-01	k: 3497741	n:4580000
KS ci ratio: 1.959999e+00	ci left: 1.350813e-07	ci right 1.914251e-06	k: 3	n:4580000
ZNF395   4580000 perm   9972 sec   (459 perm/sec)   p_kst 6.550218e-07   p_cons 7.636989e-01   p_joint 2.183406e-06

Joint ci ratio: 1.181923e+00	ci left: 1.044747e-06	ci right 4.006610e-06	k: 10	n:4590000
Cons ci ratio: 1.017773e-03	ci left: 7.633104e-01	ci right 7.640879e-01	k: 3505380	n:4590000
KS ci ratio: 1.959999e+00	ci left: 1.347870e-07	ci right 1.910080e-06	k: 3	n:4590000
ZNF395   4590000 perm   10016 sec   (458 perm/sec)   p_kst 6.535948e-07   p_cons 7.636993e-01   p_joint 2.178649e-06

Joint ci ratio: 1.181923e+00	ci left: 1.042476e-06	ci right 3.997900e-06	k: 10	n:4600000
Cons ci ratio: 1.016693e-03	ci left: 7.633013e-01	ci right 7.640779e-01	k: 3512973	n:4600000
KS ci ratio: 1.959999e+00	ci left: 1.344940e-07	ci right 1.905928e-06	k: 3	n:4600000
ZNF395   4600000 perm   10061 sec   (457 perm/sec)   p_kst 6.521739e-07   p_cons 7.636898e-01   p_joint 2.173913e-06

Joint ci ratio: 1.131605e+00	ci left: 1.191142e-06	ci right 4.269419e-06	k: 11	n:4610000
Cons ci ratio: 1.015658e-03	ci left: 7.632776e-01	ci right 7.640535e-01	k: 3520499	n:4610000
KS ci ratio: 1.959999e+00	ci left: 1.342022e-07	ci right 1.901793e-06	k: 3	n:4610000
ZNF395   4610000 perm   10103 sec   (456 perm/sec)   p_kst 6.507592e-07   p_cons 7.636657e-01   p_joint 2.386117e-06

Joint ci ratio: 1.131605e+00	ci left: 1.188563e-06	ci right 4.260177e-06	k: 11	n:4620000
Cons ci ratio: 1.014622e-03	ci left: 7.632552e-01	ci right 7.640302e-01	k: 3528030	n:4620000
KS ci ratio: 1.959999e+00	ci left: 1.339117e-07	ci right 1.897677e-06	k: 3	n:4620000
ZNF395   4620000 perm   10147 sec   (455 perm/sec)   p_kst 6.493506e-07   p_cons 7.636429e-01   p_joint 2.380952e-06

Joint ci ratio: 1.131605e+00	ci left: 1.185996e-06	ci right 4.250976e-06	k: 11	n:4630000
Cons ci ratio: 1.013479e-03	ci left: 7.632722e-01	ci right 7.640463e-01	k: 3535743	n:4630000
KS ci ratio: 1.959999e+00	ci left: 1.336225e-07	ci right 1.893578e-06	k: 3	n:4630000
ZNF395   4630000 perm   10189 sec   (454 perm/sec)   p_kst 6.479482e-07   p_cons 7.636594e-01   p_joint 2.375810e-06

Joint ci ratio: 1.131605e+00	ci left: 1.183440e-06	ci right 4.241815e-06	k: 11	n:4640000
Cons ci ratio: 1.012406e-03	ci left: 7.632658e-01	ci right 7.640391e-01	k: 3543348	n:4640000
KS ci ratio: 1.959999e+00	ci left: 1.333345e-07	ci right 1.889497e-06	k: 3	n:4640000
ZNF395   4640000 perm   10232 sec   (453 perm/sec)   p_kst 6.465517e-07   p_cons 7.636526e-01   p_joint 2.370690e-06

Joint ci ratio: 1.131605e+00	ci left: 1.180895e-06	ci right 4.232693e-06	k: 11	n:4650000
Cons ci ratio: 1.011322e-03	ci left: 7.632641e-01	ci right 7.640366e-01	k: 3550975	n:4650000
KS ci ratio: 1.959999e+00	ci left: 1.330478e-07	ci right 1.885434e-06	k: 3	n:4650000
ZNF395   4650000 perm   10274 sec   (453 perm/sec)   p_kst 6.451613e-07   p_cons 7.636505e-01   p_joint 2.365591e-06

Joint ci ratio: 1.131605e+00	ci left: 1.178361e-06	ci right 4.223609e-06	k: 11	n:4660000
Cons ci ratio: 1.010243e-03	ci left: 7.632621e-01	ci right 7.640337e-01	k: 3558600	n:4660000
KS ci ratio: 1.959999e+00	ci left: 1.327623e-07	ci right 1.881388e-06	k: 3	n:4660000
ZNF395   4660000 perm   10316 sec   (452 perm/sec)   p_kst 6.437768e-07   p_cons 7.636481e-01   p_joint 2.360515e-06

Joint ci ratio: 1.131605e+00	ci left: 1.175838e-06	ci right 4.214565e-06	k: 11	n:4670000
Cons ci ratio: 1.009154e-03	ci left: 7.632650e-01	ci right 7.640358e-01	k: 3566248	n:4670000
KS ci ratio: 1.959999e+00	ci left: 1.324780e-07	ci right 1.877359e-06	k: 3	n:4670000
ZNF395   4670000 perm   10359 sec   (451 perm/sec)   p_kst 6.423983e-07   p_cons 7.636505e-01   p_joint 2.355460e-06

Joint ci ratio: 1.131605e+00	ci left: 1.173325e-06	ci right 4.205560e-06	k: 11	n:4680000
Cons ci ratio: 1.008094e-03	ci left: 7.632586e-01	ci right 7.640287e-01	k: 3573853	n:4680000
KS ci ratio: 1.959999e+00	ci left: 1.321949e-07	ci right 1.873348e-06	k: 3	n:4680000
ZNF395   4680000 perm   10402 sec   (450 perm/sec)   p_kst 6.410256e-07   p_cons 7.636438e-01   p_joint 2.350427e-06

Joint ci ratio: 1.131605e+00	ci left: 1.170824e-06	ci right 4.196593e-06	k: 11	n:4690000
Cons ci ratio: 1.007055e-03	ci left: 7.632461e-01	ci right 7.640154e-01	k: 3581429	n:4690000
KS ci ratio: 1.959999e+00	ci left: 1.319131e-07	ci right 1.869353e-06	k: 3	n:4690000
ZNF395   4690000 perm   10445 sec   (449 perm/sec)   p_kst 6.396588e-07   p_cons 7.636309e-01   p_joint 2.345416e-06

Joint ci ratio: 1.131605e+00	ci left: 1.168333e-06	ci right 4.187664e-06	k: 11	n:4700000
Cons ci ratio: 1.005950e-03	ci left: 7.632586e-01	ci right 7.640270e-01	k: 3589122	n:4700000
KS ci ratio: 1.959999e+00	ci left: 1.316324e-07	ci right 1.865376e-06	k: 3	n:4700000
ZNF395   4700000 perm   10487 sec   (448 perm/sec)   p_kst 6.382979e-07   p_cons 7.636430e-01   p_joint 2.340426e-06

Joint ci ratio: 1.131605e+00	ci left: 1.165852e-06	ci right 4.178773e-06	k: 11	n:4710000
Cons ci ratio: 1.004833e-03	ci left: 7.632761e-01	ci right 7.640437e-01	k: 3596839	n:4710000
KS ci ratio: 1.959999e+00	ci left: 1.313529e-07	ci right 1.861416e-06	k: 3	n:4710000
ZNF395   4710000 perm   10530 sec   (447 perm/sec)   p_kst 6.369427e-07   p_cons 7.636601e-01   p_joint 2.335456e-06

Joint ci ratio: 1.131605e+00	ci left: 1.163382e-06	ci right 4.169920e-06	k: 11	n:4720000
Cons ci ratio: 1.003754e-03	ci left: 7.632817e-01	ci right 7.640485e-01	k: 3604500	n:4720000
KS ci ratio: 1.959999e+00	ci left: 1.310746e-07	ci right 1.857472e-06	k: 3	n:4720000
ZNF395   4720000 perm   10573 sec   (446 perm/sec)   p_kst 6.355932e-07   p_cons 7.636653e-01   p_joint 2.330508e-06

Joint ci ratio: 1.131605e+00	ci left: 1.160922e-06	ci right 4.161104e-06	k: 11	n:4730000
Cons ci ratio: 1.002679e-03	ci left: 7.632871e-01	ci right 7.640530e-01	k: 3612160	n:4730000
KS ci ratio: 1.959999e+00	ci left: 1.307975e-07	ci right 1.853545e-06	k: 3	n:4730000
ZNF395   4730000 perm   10617 sec   (445 perm/sec)   p_kst 6.342495e-07   p_cons 7.636702e-01   p_joint 2.325581e-06

Joint ci ratio: 1.131605e+00	ci left: 1.158473e-06	ci right 4.152325e-06	k: 11	n:4740000
Cons ci ratio: 1.001644e-03	ci left: 7.632791e-01	ci right 7.640442e-01	k: 3619757	n:4740000
KS ci ratio: 1.959999e+00	ci left: 1.305216e-07	ci right 1.849635e-06	k: 3	n:4740000
ZNF395   4740000 perm   10660 sec   (445 perm/sec)   p_kst 6.329114e-07   p_cons 7.636618e-01   p_joint 2.320675e-06

Joint ci ratio: 1.087211e+00	ci left: 1.305385e-06	ci right 4.412961e-06	k: 12	n:4750000
Cons ci ratio: 1.000646e-03	ci left: 7.632589e-01	ci right 7.640233e-01	k: 3627296	n:4750000
KS ci ratio: 1.959999e+00	ci left: 1.302468e-07	ci right 1.845741e-06	k: 3	n:4750000
ZNF395   4750000 perm   10702 sec   (444 perm/sec)   p_kst 6.315789e-07   p_cons 7.636413e-01   p_joint 2.526316e-06

Joint ci ratio: 1.087211e+00	ci left: 1.302642e-06	ci right 4.403690e-06	k: 12	n:4760000
Cons ci ratio: 9.995491e-04	ci left: 7.632756e-01	ci right 7.640392e-01	k: 3635010	n:4760000
KS ci ratio: 1.959999e+00	ci left: 1.299732e-07	ci right 1.841863e-06	k: 3	n:4760000
ZNF395   4760000 perm   10745 sec   (443 perm/sec)   p_kst 6.302521e-07   p_cons 7.636576e-01   p_joint 2.521008e-06

Joint ci ratio: 1.087211e+00	ci left: 1.299912e-06	ci right 4.394458e-06	k: 12	n:4770000
Cons ci ratio: 9.984849e-04	ci left: 7.632818e-01	ci right 7.640445e-01	k: 3642674	n:4770000
KS ci ratio: 1.959999e+00	ci left: 1.297007e-07	ci right 1.838002e-06	k: 3	n:4770000
ZNF395   4770000 perm   10793 sec   (442 perm/sec)   p_kst 6.289308e-07   p_cons 7.636633e-01   p_joint 2.515723e-06

Joint ci ratio: 1.087211e+00	ci left: 1.297192e-06	ci right 4.385265e-06	k: 12	n:4780000
Cons ci ratio: 9.974206e-04	ci left: 7.632892e-01	ci right 7.640511e-01	k: 3650344	n:4780000
KS ci ratio: 1.959999e+00	ci left: 1.294293e-07	ci right 1.834156e-06	k: 3	n:4780000
ZNF395   4780000 perm   10835 sec   (441 perm/sec)   p_kst 6.276151e-07   p_cons 7.636703e-01   p_joint 2.510460e-06

Joint ci ratio: 1.087211e+00	ci left: 1.294484e-06	ci right 4.376110e-06	k: 12	n:4790000
Cons ci ratio: 9.963545e-04	ci left: 7.632984e-01	ci right 7.640595e-01	k: 3658023	n:4790000
KS ci ratio: 1.959999e+00	ci left: 1.291591e-07	ci right 1.830327e-06	k: 3	n:4790000
ZNF395   4790000 perm   10879 sec   (440 perm/sec)   p_kst 6.263048e-07   p_cons 7.636791e-01   p_joint 2.505219e-06

Joint ci ratio: 1.087211e+00	ci left: 1.291787e-06	ci right 4.366993e-06	k: 12	n:4800000
Cons ci ratio: 9.953332e-04	ci left: 7.632926e-01	ci right 7.640529e-01	k: 3665630	n:4800000
KS ci ratio: 1.959999e+00	ci left: 1.288900e-07	ci right 1.826514e-06	k: 3	n:4800000
ZNF395   4800000 perm   10924 sec   (439 perm/sec)   p_kst 6.250000e-07   p_cons 7.636729e-01   p_joint 2.500000e-06

Joint ci ratio: 1.087211e+00	ci left: 1.289101e-06	ci right 4.357914e-06	k: 12	n:4810000
Cons ci ratio: 9.942841e-04	ci left: 7.632981e-01	ci right 7.640576e-01	k: 3673291	n:4810000
KS ci ratio: 1.959999e+00	ci left: 1.286221e-07	ci right 1.822717e-06	k: 3	n:4810000
ZNF395   4810000 perm   10969 sec   (439 perm/sec)   p_kst 6.237006e-07   p_cons 7.636780e-01   p_joint 2.494802e-06

Joint ci ratio: 1.087211e+00	ci left: 1.286427e-06	ci right 4.348873e-06	k: 12	n:4820000
Cons ci ratio: 9.932521e-04	ci left: 7.632985e-01	ci right 7.640572e-01	k: 3680928	n:4820000
KS ci ratio: 1.959999e+00	ci left: 1.283552e-07	ci right 1.818935e-06	k: 3	n:4820000
ZNF395   4820000 perm   11014 sec   (438 perm/sec)   p_kst 6.224066e-07   p_cons 7.636780e-01   p_joint 2.489627e-06

Joint ci ratio: 1.087211e+00	ci left: 1.283764e-06	ci right 4.339869e-06	k: 12	n:4830000
Cons ci ratio: 9.922329e-04	ci left: 7.632954e-01	ci right 7.640533e-01	k: 3688548	n:4830000
KS ci ratio: 1.959999e+00	ci left: 1.280895e-07	ci right 1.815169e-06	k: 3	n:4830000
ZNF395   4830000 perm   11058 sec   (437 perm/sec)   p_kst 6.211180e-07   p_cons 7.636745e-01   p_joint 2.484472e-06

Joint ci ratio: 1.087211e+00	ci left: 1.281111e-06	ci right 4.330902e-06	k: 12	n:4840000
Cons ci ratio: 9.912315e-04	ci left: 7.632870e-01	ci right 7.640441e-01	k: 3696142	n:4840000
KS ci ratio: 1.959999e+00	ci left: 1.278248e-07	ci right 1.811419e-06	k: 3	n:4840000
ZNF395   4840000 perm   11102 sec   (436 perm/sec)   p_kst 6.198347e-07   p_cons 7.636657e-01   p_joint 2.479339e-06

Joint ci ratio: 1.087211e+00	ci left: 1.278470e-06	ci right 4.321972e-06	k: 12	n:4850000
Cons ci ratio: 9.902140e-04	ci left: 7.632856e-01	ci right 7.640420e-01	k: 3703770	n:4850000
KS ci ratio: 1.959999e+00	ci left: 1.275613e-07	ci right 1.807684e-06	k: 3	n:4850000
ZNF395   4850000 perm   11146 sec   (435 perm/sec)   p_kst 6.185567e-07   p_cons 7.636639e-01   p_joint 2.474227e-06

Joint ci ratio: 1.087211e+00	ci left: 1.275839e-06	ci right 4.313079e-06	k: 12	n:4860000
Cons ci ratio: 9.891917e-04	ci left: 7.632871e-01	ci right 7.640427e-01	k: 3711412	n:4860000
KS ci ratio: 1.959999e+00	ci left: 1.272988e-07	ci right 1.803965e-06	k: 3	n:4860000
ZNF395   4860000 perm   11193 sec   (434 perm/sec)   p_kst 6.172840e-07   p_cons 7.636650e-01   p_joint 2.469136e-06

Joint ci ratio: 1.239611e+00	ci left: 8.450461e-07	ci right 3.508170e-06	k: 9	n:4870000
Cons ci ratio: 9.881968e-04	ci left: 7.632797e-01	ci right 7.640346e-01	k: 3719011	n:4870000
KS ci ratio: 1.959999e+00	ci left: 1.270374e-07	ci right 1.800260e-06	k: 3	n:4870000
ZNF395   4870000 perm   11239 sec   (433 perm/sec)   p_kst 6.160164e-07   p_cons 7.636573e-01   p_joint 1.848049e-06

Joint ci ratio: 1.239611e+00	ci left: 8.433145e-07	ci right 3.500981e-06	k: 9	n:4880000
Cons ci ratio: 9.872026e-04	ci left: 7.632732e-01	ci right 7.640273e-01	k: 3726614	n:4880000
KS ci ratio: 1.959999e+00	ci left: 1.267771e-07	ci right 1.796571e-06	k: 3	n:4880000
ZNF395   4880000 perm   11285 sec   (432 perm/sec)   p_kst 6.147541e-07   p_cons 7.636504e-01   p_joint 1.844262e-06

Joint ci ratio: 1.239611e+00	ci left: 8.415899e-07	ci right 3.493822e-06	k: 9	n:4890000
Cons ci ratio: 9.861846e-04	ci left: 7.632766e-01	ci right 7.640299e-01	k: 3734265	n:4890000
KS ci ratio: 1.959999e+00	ci left: 1.265178e-07	ci right 1.792897e-06	k: 3	n:4890000
ZNF395   4890000 perm   11331 sec   (432 perm/sec)   p_kst 6.134969e-07   p_cons 7.636534e-01   p_joint 1.840491e-06

Joint ci ratio: 1.239611e+00	ci left: 8.398724e-07	ci right 3.486692e-06	k: 9	n:4900000
Cons ci ratio: 9.851825e-04	ci left: 7.632752e-01	ci right 7.640277e-01	k: 3741893	n:4900000
KS ci ratio: 1.959999e+00	ci left: 1.262596e-07	ci right 1.789238e-06	k: 3	n:4900000
ZNF395   4900000 perm   11375 sec   (431 perm/sec)   p_kst 6.122449e-07   p_cons 7.636516e-01   p_joint 1.836735e-06

Joint ci ratio: 1.239611e+00	ci left: 8.381619e-07	ci right 3.479591e-06	k: 9	n:4910000
Cons ci ratio: 9.842068e-04	ci left: 7.632653e-01	ci right 7.640171e-01	k: 3749479	n:4910000
KS ci ratio: 1.959999e+00	ci left: 1.260025e-07	ci right 1.785594e-06	k: 3	n:4910000
ZNF395   4910000 perm   11421 sec   (430 perm/sec)   p_kst 6.109980e-07   p_cons 7.636413e-01   p_joint 1.832994e-06

Joint ci ratio: 1.239611e+00	ci left: 8.364583e-07	ci right 3.472518e-06	k: 9	n:4920000
Cons ci ratio: 9.832157e-04	ci left: 7.632621e-01	ci right 7.640132e-01	k: 3757098	n:4920000
KS ci ratio: 1.959999e+00	ci left: 1.257464e-07	ci right 1.781965e-06	k: 3	n:4920000
ZNF395   4920000 perm   11465 sec   (429 perm/sec)   p_kst 6.097561e-07   p_cons 7.636378e-01   p_joint 1.829268e-06

Joint ci ratio: 1.239611e+00	ci left: 8.347616e-07	ci right 3.465475e-06	k: 9	n:4930000
Cons ci ratio: 9.822193e-04	ci left: 7.632620e-01	ci right 7.640123e-01	k: 3764732	n:4930000
KS ci ratio: 1.959999e+00	ci left: 1.254913e-07	ci right 1.778350e-06	k: 3	n:4930000
ZNF395   4930000 perm   11510 sec   (428 perm/sec)   p_kst 6.085193e-07   p_cons 7.636373e-01   p_joint 1.825558e-06

Joint ci ratio: 1.239611e+00	ci left: 8.330718e-07	ci right 3.458459e-06	k: 9	n:4940000
Cons ci ratio: 9.812276e-04	ci left: 7.632613e-01	ci right 7.640108e-01	k: 3772363	n:4940000
KS ci ratio: 1.959999e+00	ci left: 1.252373e-07	ci right 1.774751e-06	k: 3	n:4940000
ZNF395   4940000 perm   11555 sec   (428 perm/sec)   p_kst 6.072874e-07   p_cons 7.636362e-01   p_joint 1.821862e-06

Joint ci ratio: 1.239611e+00	ci left: 8.313888e-07	ci right 3.451473e-06	k: 9	n:4950000
Cons ci ratio: 9.802922e-04	ci left: 7.632410e-01	ci right 7.639898e-01	k: 3779897	n:4950000
KS ci ratio: 1.959999e+00	ci left: 1.249843e-07	ci right 1.771165e-06	k: 3	n:4950000
ZNF395   4950000 perm   11600 sec   (427 perm/sec)   p_kst 6.060606e-07   p_cons 7.636156e-01   p_joint 1.818182e-06

Joint ci ratio: 1.239611e+00	ci left: 8.297126e-07	ci right 3.444514e-06	k: 9	n:4960000
Cons ci ratio: 9.792844e-04	ci left: 7.632484e-01	ci right 7.639964e-01	k: 3787568	n:4960000
KS ci ratio: 1.959999e+00	ci left: 1.247323e-07	ci right 1.767594e-06	k: 3	n:4960000
ZNF395   4960000 perm   11648 sec   (426 perm/sec)   p_kst 6.048387e-07   p_cons 7.636226e-01   p_joint 1.814516e-06

Joint ci ratio: 1.239611e+00	ci left: 8.280432e-07	ci right 3.437583e-06	k: 9	n:4970000
Cons ci ratio: 9.782650e-04	ci left: 7.632612e-01	ci right 7.640085e-01	k: 3795266	n:4970000
KS ci ratio: 1.959999e+00	ci left: 1.244813e-07	ci right 1.764038e-06	k: 3	n:4970000
ZNF395   4970000 perm   11693 sec   (425 perm/sec)   p_kst 6.036217e-07   p_cons 7.636350e-01   p_joint 1.810865e-06

Joint ci ratio: 1.239611e+00	ci left: 8.263805e-07	ci right 3.430681e-06	k: 9	n:4980000
Cons ci ratio: 9.772760e-04	ci left: 7.632640e-01	ci right 7.640104e-01	k: 3802914	n:4980000
KS ci ratio: 1.959999e+00	ci left: 1.242314e-07	ci right 1.760496e-06	k: 3	n:4980000
ZNF395   4980000 perm   11739 sec   (424 perm/sec)   p_kst 6.024096e-07   p_cons 7.636373e-01   p_joint 1.807229e-06

Joint ci ratio: 1.239611e+00	ci left: 8.247244e-07	ci right 3.423806e-06	k: 9	n:4990000
Cons ci ratio: 9.763382e-04	ci left: 7.632488e-01	ci right 7.639946e-01	k: 3810473	n:4990000
KS ci ratio: 1.959999e+00	ci left: 1.239824e-07	ci right 1.756968e-06	k: 3	n:4990000
ZNF395   4990000 perm   11790 sec   (423 perm/sec)   p_kst 6.012024e-07   p_cons 7.636218e-01   p_joint 1.803607e-06

Joint ci ratio: 1.239611e+00	ci left: 8.230749e-07	ci right 3.416958e-06	k: 9	n:5000000
Cons ci ratio: 9.753248e-04	ci left: 7.632628e-01	ci right 7.640077e-01	k: 3818177	n:5000000
KS ci ratio: 1.959999e+00	ci left: 1.237344e-07	ci right 1.753454e-06	k: 3	n:5000000
ZNF395   5000000 perm   11836 sec   (422 perm/sec)   p_kst 6.000000e-07   p_cons 7.636354e-01   p_joint 1.800000e-06

Outputting figure to mutsig2_images.part000000000197/ZNF395.3_1578_5000000_6e-07_0.76364_1.8e-06.png
                gene_name: ZNF395
               theta_stop: 2.0 
                    nperm: 5000000 
                     p_ks: 6.00e-07 
        ci_ks_bounds_left: 1.24e-07 
       ci_ks_bounds_right: 1.75e-06 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.76 
     ci_cons_bounds_right: 0.76 
                  p_joint: 1.80e-06 
     ci_joint_bounds_left: 8.23e-07 
    ci_joint_bounds_right: 3.42e-06 

Current progress: 66 percent done.
ZNF404
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.917816e-01	ci left: 3.624378e-02	ci right 4.402702e-02	k: 400	n:10000
Cons ci ratio: 5.338560e-02	ci left: 3.408451e-01	ci right 3.596422e-01	k: 3502	n:10000
KS ci ratio: 2.272211e-01	ci left: 2.560990e-02	ci right 3.226830e-02	k: 288	n:10000
ZNF404   10000 perm   2 sec   (5514 perm/sec)   p_kst 2.880000e-02   p_cons 3.502000e-01   p_joint 4.000000e-02

Joint ci ratio: 9.579764e-02	ci left: 7.353756e-02	ci right 8.098590e-02	k: 1544	n:20000
Cons ci ratio: 3.775339e-02	ci left: 3.435860e-01	ci right 3.568576e-01	k: 7004	n:20000
KS ci ratio: 1.611044e-01	ci left: 2.642978e-02	ci right 3.110856e-02	k: 574	n:20000
ZNF404   20000 perm   4 sec   (4956 perm/sec)   p_kst 2.870000e-02   p_cons 3.502000e-01   p_joint 7.720000e-02

Joint ci ratio: 6.772008e-02	ci left: 9.705419e-02	ci right 1.038901e-01	k: 3013	n:30000
Cons ci ratio: 2.971040e-02	ci left: 3.617085e-01	ci right 3.726506e-01	k: 11015	n:30000
KS ci ratio: 1.329373e-01	ci left: 2.629135e-02	ci right 3.006743e-02	k: 844	n:30000
ZNF404   30000 perm   6 sec   (4639 perm/sec)   p_kst 2.813333e-02   p_cons 3.671667e-01   p_joint 1.004333e-01

Joint ci ratio: 5.582918e-02	ci left: 1.066533e-01	ci right 1.128035e-01	k: 4388	n:40000
Cons ci ratio: 2.561271e-02	ci left: 3.645676e-01	ci right 3.740514e-01	k: 14772	n:40000
KS ci ratio: 1.136652e-01	ci left: 2.723143e-02	ci right 3.053743e-02	k: 1154	n:40000
ZNF404   40000 perm   9 sec   (4549 perm/sec)   p_kst 2.885000e-02   p_cons 3.693000e-01   p_joint 1.097000e-01

Joint ci ratio: 5.654141e-02	ci left: 8.521493e-02	ci right 9.019306e-02	k: 4384	n:50000
Cons ci ratio: 2.292074e-02	ci left: 3.648280e-01	ci right 3.733072e-01	k: 18453	n:50000
KS ci ratio: 1.018017e-01	ci left: 2.733197e-02	ci right 3.028307e-02	k: 1439	n:50000
ZNF404   50000 perm   11 sec   (4439 perm/sec)   p_kst 2.878000e-02   p_cons 3.690600e-01   p_joint 8.768000e-02

Joint ci ratio: 6.350221e-02	ci left: 5.781720e-02	ci right 6.162553e-02	k: 3582	n:60000
Cons ci ratio: 2.174035e-02	ci left: 3.475956e-01	ci right 3.552521e-01	k: 21085	n:60000
KS ci ratio: 9.232854e-02	ci left: 2.781841e-02	ci right 3.052739e-02	k: 1749	n:60000
ZNF404   60000 perm   14 sec   (4350 perm/sec)   p_kst 2.915000e-02   p_cons 3.514167e-01   p_joint 5.970000e-02

Outputting figure to mutsig2_images.part000000000197/ZNF404.3_1658_60000_0.02915_0.35142_0.0597.png
                gene_name: ZNF404
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.029 
        ci_ks_bounds_left: 0.028 
       ci_ks_bounds_right: 0.031 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.060 
     ci_joint_bounds_left: 0.058 
    ci_joint_bounds_right: 0.062 

Current progress: 67 percent done.
ZNF410
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.644165e-02	ci left: 3.161198e-01	ci right 3.345821e-01	k: 3253	n:10000
Cons ci ratio: 7.100173e-02	ci left: 2.252368e-01	ci right 2.419187e-01	k: 2335	n:10000
KS ci ratio: 6.753509e-02	ci left: 2.434149e-01	ci right 2.605298e-01	k: 2519	n:10000
ZNF410   10000 perm   2 sec   (6556 perm/sec)   p_kst 2.519000e-01   p_cons 2.335000e-01   p_joint 3.253000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF410.3_1481_10000_0.2519_0.2335_0.3253.png
                gene_name: ZNF410
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 68 percent done.
ZNF416
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.350728e-03	ci left: 9.789852e-01	ci right 9.843289e-01	k: 9818	n:10000
Cons ci ratio: 1.583820e-02	ci left: 8.527383e-01	ci right 8.664514e-01	k: 8597	n:10000
KS ci ratio: 1.231710e-02	ci left: 9.044264e-01	ci right 9.157334e-01	k: 9102	n:10000
ZNF416   10000 perm   2 sec   (5587 perm/sec)   p_kst 9.102000e-01   p_cons 8.597000e-01   p_joint 9.818000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF416.3_1801_10000_0.9102_0.8597_0.9818.png
                gene_name: ZNF416
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.98 

Current progress: 70 percent done.
ZNF438
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.029456e-02	ci left: 2.880544e-01	ci right 3.060640e-01	k: 2970	n:10000
Cons ci ratio: 4.981796e-02	ci left: 3.727610e-01	ci right 3.919076e-01	k: 3823	n:10000
KS ci ratio: 9.121080e-02	ci left: 1.487429e-01	ci right 1.630582e-01	k: 1558	n:10000
ZNF438   10000 perm   2 sec   (5527 perm/sec)   p_kst 1.558000e-01   p_cons 3.823000e-01   p_joint 2.970000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF438.3_2510_10000_0.1558_0.3823_0.297.png
                gene_name: ZNF438
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 71 percent done.
ZNF441
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.200770e-02	ci left: 2.203008e-01	ci right 2.368576e-01	k: 2285	n:10000
Cons ci ratio: 3.349092e-02	ci left: 5.682486e-01	ci right 5.877059e-01	k: 5780	n:10000
KS ci ratio: 1.262686e-01	ci left: 8.232386e-02	ci right 9.351756e-02	k: 878	n:10000
ZNF441   10000 perm   2 sec   (5461 perm/sec)   p_kst 8.780000e-02   p_cons 5.780000e-01   p_joint 2.285000e-01

Joint ci ratio: 6.907211e-02	ci left: 1.338884e-01	ci right 1.435169e-01	k: 2773	n:20000
Cons ci ratio: 2.455091e-02	ci left: 5.534378e-01	ci right 5.672447e-01	k: 11207	n:20000
KS ci ratio: 8.876230e-02	ci left: 8.489271e-02	ci right 9.282730e-02	k: 1776	n:20000
ZNF441   20000 perm   4 sec   (4743 perm/sec)   p_kst 8.880000e-02   p_cons 5.603500e-01   p_joint 1.386500e-01

Outputting figure to mutsig2_images.part000000000197/ZNF441.3_2098_20000_0.0888_0.56035_0.13865.png
                gene_name: ZNF441
               theta_stop: 0.089 
                    nperm: 20000 
                     p_ks: 0.089 
        ci_ks_bounds_left: 0.085 
       ci_ks_bounds_right: 0.093 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.14 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 73 percent done.
ZNF449
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.284895e-02	ci left: 7.377518e-01	ci right 7.549045e-01	k: 7464	n:10000
Cons ci ratio: 5.179401e-02	ci left: 3.546598e-01	ci right 3.736194e-01	k: 3641	n:10000
KS ci ratio: 3.040660e-02	ci left: 6.147227e-01	ci right 6.338048e-01	k: 6243	n:10000
ZNF449   10000 perm   2 sec   (6206 perm/sec)   p_kst 6.243000e-01   p_cons 3.641000e-01   p_joint 7.464000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF449.3_1573_10000_0.6243_0.3641_0.7464.png
                gene_name: ZNF449
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.75 

Current progress: 74 percent done.
ZNF468
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.204299e-02	ci left: 2.763642e-01	ci right 2.941611e-01	k: 2852	n:10000
Cons ci ratio: 6.649439e-02	ci left: 2.492482e-01	ci right 2.664931e-01	k: 2578	n:10000
KS ci ratio: 5.600744e-02	ci left: 3.194942e-01	ci right 3.380056e-01	k: 3287	n:10000
ZNF468   10000 perm   2 sec   (5773 perm/sec)   p_kst 3.287000e-01   p_cons 2.578000e-01   p_joint 2.852000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF468.3_1581_10000_0.3287_0.2578_0.2852.png
                gene_name: ZNF468
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.29 

Current progress: 75 percent done.
ZNF490
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.066714e-02	ci left: 7.742826e-01	ci right 7.905526e-01	k: 7825	n:10000
KS ci ratio: 1.091607e-02	ci left: 9.228612e-01	ci right 9.330878e-01	k: 9281	n:10000
ZNF490   10000 perm   2 sec   (6494 perm/sec)   p_kst 9.281000e-01   p_cons 7.825000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF490.3_1610_10000_0.9281_0.7825_1.png
                gene_name: ZNF490
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.92 
       ci_ks_bounds_right: 0.93 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 77 percent done.
ZNF507
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.864716e-02	ci left: 2.996526e-01	ci right 3.178589e-01	k: 3087	n:10000
Cons ci ratio: 4.054177e-02	ci left: 4.732619e-01	ci right 4.929479e-01	k: 4831	n:10000
KS ci ratio: 8.028430e-02	ci left: 1.847145e-01	ci right 2.002650e-01	k: 1924	n:10000
ZNF507   10000 perm   2 sec   (5104 perm/sec)   p_kst 1.924000e-01   p_cons 4.831000e-01   p_joint 3.087000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF507.3_2882_10000_0.1924_0.4831_0.3087.png
                gene_name: ZNF507
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 78 percent done.
ZNF512B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.298371e-02	ci left: 1.438386e-01	ci right 1.579654e-01	k: 1508	n:10000
Cons ci ratio: 8.818083e-02	ci left: 1.576751e-01	ci right 1.723206e-01	k: 1649	n:10000
KS ci ratio: 8.426517e-02	ci left: 1.703508e-01	ci right 1.854373e-01	k: 1778	n:10000
ZNF512B   10000 perm   2 sec   (5744 perm/sec)   p_kst 1.778000e-01   p_cons 1.649000e-01   p_joint 1.508000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF512B.3_2743_10000_0.1778_0.1649_0.1508.png
                gene_name: ZNF512B
               theta_stop: 0.093 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.16 

Current progress: 79 percent done.
ZNF518B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.396041e-02	ci left: 2.111242e-01	ci right 2.274396e-01	k: 2192	n:10000
Cons ci ratio: 4.480377e-02	ci left: 4.237578e-01	ci right 4.432810e-01	k: 4335	n:10000
KS ci ratio: 1.585526e-01	ci left: 5.301669e-02	ci right 6.224312e-02	k: 575	n:10000
ZNF518B   10000 perm   2 sec   (5158 perm/sec)   p_kst 5.750000e-02   p_cons 4.335000e-01   p_joint 2.192000e-01

Joint ci ratio: 8.338596e-02	ci left: 9.533591e-02	ci right 1.036809e-01	k: 1989	n:20000
Cons ci ratio: 3.114780e-02	ci left: 4.350013e-01	ci right 4.488156e-01	k: 8838	n:20000
KS ci ratio: 1.104967e-01	ci left: 5.591985e-02	ci right 6.250903e-02	k: 1183	n:20000
ZNF518B   20000 perm   4 sec   (4557 perm/sec)   p_kst 5.915000e-02   p_cons 4.419000e-01   p_joint 9.945000e-02

Joint ci ratio: 7.348516e-02	ci left: 8.344091e-02	ci right 8.983941e-02	k: 2598	n:30000
Cons ci ratio: 2.536075e-02	ci left: 4.376676e-01	ci right 4.489434e-01	k: 13299	n:30000
KS ci ratio: 8.971188e-02	ci left: 5.714289e-02	ci right 6.254274e-02	k: 1794	n:30000
ZNF518B   30000 perm   7 sec   (4351 perm/sec)   p_kst 5.980000e-02   p_cons 4.433000e-01   p_joint 8.660000e-02

Outputting figure to mutsig2_images.part000000000197/ZNF518B.3_3229_30000_0.0598_0.4433_0.0866.png
                gene_name: ZNF518B
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.060 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.063 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.087 
     ci_joint_bounds_left: 0.083 
    ci_joint_bounds_right: 0.090 

Current progress: 81 percent done.
ZNF519
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.207474e-02	ci left: 3.521745e-01	ci right 3.711061e-01	k: 3616	n:10000
Cons ci ratio: 4.647540e-02	ci left: 4.059166e-01	ci right 4.253326e-01	k: 4156	n:10000
KS ci ratio: 5.645451e-02	ci left: 3.160206e-01	ci right 3.344813e-01	k: 3252	n:10000
ZNF519   10000 perm   2 sec   (4774 perm/sec)   p_kst 3.252000e-01   p_cons 4.156000e-01   p_joint 3.616000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF519.3_1635_10000_0.3252_0.4156_0.3616.png
                gene_name: ZNF519
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 82 percent done.
ZNF397
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.149762e-03	ci left: 9.958378e-01	ci right 9.980570e-01	k: 9971	n:10000
KS ci ratio: 3.715456e-02	ci left: 5.168576e-01	ci right 5.365269e-01	k: 5267	n:10000
ZNF397   10000 perm   2 sec   (6112 perm/sec)   p_kst 5.267000e-01   p_cons 9.971000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF397.2_1807_10000_0.5267_0.9971_1.png
                gene_name: ZNF397
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 84 percent done.
ZNF398
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.410615e-02	ci left: 8.789942e-01	ci right 8.915804e-01	k: 8854	n:10000
Cons ci ratio: 2.209473e-02	ci left: 7.503916e-01	ci right 7.672574e-01	k: 7589	n:10000
KS ci ratio: 2.497253e-02	ci left: 7.023076e-01	ci right 7.201692e-01	k: 7113	n:10000
ZNF398   10000 perm   2 sec   (5971 perm/sec)   p_kst 7.113000e-01   p_cons 7.589000e-01   p_joint 8.854000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF398.2_1953_10000_0.7113_0.7589_0.8854.png
                gene_name: ZNF398
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.88 
    ci_joint_bounds_right: 0.89 

Current progress: 85 percent done.
ZNF417
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.371625e-02	ci left: 1.418777e-01	ci right 1.559275e-01	k: 1488	n:10000
Cons ci ratio: 1.547402e-01	ci left: 5.561671e-02	ci right 6.504144e-02	k: 602	n:10000
KS ci ratio: 5.906185e-02	ci left: 2.966780e-01	ci right 3.148353e-01	k: 3057	n:10000
ZNF417   10000 perm   2 sec   (6142 perm/sec)   p_kst 3.057000e-01   p_cons 6.020000e-02   p_joint 1.488000e-01

Joint ci ratio: 1.005682e-01	ci left: 6.703871e-02	ci right 7.418673e-02	k: 1411	n:20000
Cons ci ratio: 1.092276e-01	ci left: 5.718621e-02	ci right 6.384227e-02	k: 1209	n:20000
KS ci ratio: 4.212495e-02	ci left: 2.957405e-01	ci right 3.085171e-01	k: 6042	n:20000
ZNF417   20000 perm   4 sec   (5353 perm/sec)   p_kst 3.021000e-01   p_cons 6.045000e-02   p_joint 7.055000e-02

Joint ci ratio: 7.240754e-02	ci left: 8.576834e-02	ci right 9.224485e-02	k: 2669	n:30000
Cons ci ratio: 8.934188e-02	ci left: 5.759973e-02	ci right 6.301914e-02	k: 1808	n:30000
KS ci ratio: 3.415313e-02	ci left: 2.998920e-01	ci right 3.103457e-01	k: 9153	n:30000
ZNF417   30000 perm   6 sec   (5064 perm/sec)   p_kst 3.051000e-01   p_cons 6.026667e-02   p_joint 8.896667e-02

Outputting figure to mutsig2_images.part000000000197/ZNF417.2_1740_30000_0.3051_0.060267_0.088967.png
                gene_name: ZNF417
               theta_stop: 0.089 
                    nperm: 30000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.060 
      ci_cons_bounds_left: 0.058 
     ci_cons_bounds_right: 0.063 
                  p_joint: 0.089 
     ci_joint_bounds_left: 0.086 
    ci_joint_bounds_right: 0.092 

Current progress: 86 percent done.
ZNF433
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.153763e-03	ci left: 9.803783e-01	ci right 9.855349e-01	k: 9831	n:10000
Cons ci ratio: 3.037421e-02	ci left: 6.152251e-01	ci right 6.343022e-01	k: 6248	n:10000
KS ci ratio: 8.144362e-03	ci left: 9.546142e-01	ci right 9.625159e-01	k: 9587	n:10000
ZNF433   10000 perm   2 sec   (5497 perm/sec)   p_kst 9.587000e-01   p_cons 6.248000e-01   p_joint 9.831000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF433.2_2038_10000_0.9587_0.6248_0.9831.png
                gene_name: ZNF433
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 88 percent done.
ZNF467
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.014793e-02	ci left: 6.187420e-01	ci right 6.377832e-01	k: 6283	n:10000
Cons ci ratio: 1.585132e-02	ci left: 8.525343e-01	ci right 8.662556e-01	k: 8595	n:10000
KS ci ratio: 1.199415e-01	ci left: 9.068353e-02	ci right 1.023527e-01	k: 964	n:10000
ZNF467   10000 perm   2 sec   (6364 perm/sec)   p_kst 9.640000e-02   p_cons 8.595000e-01   p_joint 6.283000e-01

Joint ci ratio: 2.509357e-02	ci left: 5.426228e-01	ci right 5.564628e-01	k: 10991	n:20000
Cons ci ratio: 1.194919e-02	ci left: 8.381872e-01	ci right 8.483128e-01	k: 16866	n:20000
KS ci ratio: 8.537731e-02	ci left: 9.126462e-02	ci right 9.945345e-02	k: 1906	n:20000
ZNF467   20000 perm   4 sec   (5506 perm/sec)   p_kst 9.530000e-02   p_cons 8.433000e-01   p_joint 5.495500e-01

Outputting figure to mutsig2_images.part000000000197/ZNF467.2_1804_20000_0.0953_0.8433_0.54955.png
                gene_name: ZNF467
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.095 
        ci_ks_bounds_left: 0.091 
       ci_ks_bounds_right: 0.099 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 89 percent done.
ZNF480
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.222166e-02	ci left: 3.508823e-01	ci right 3.697992e-01	k: 3603	n:10000
Cons ci ratio: 5.740679e-02	ci left: 3.087773e-01	ci right 3.271288e-01	k: 3179	n:10000
KS ci ratio: 5.668679e-02	ci left: 3.142343e-01	ci right 3.326686e-01	k: 3234	n:10000
ZNF480   10000 perm   2 sec   (6174 perm/sec)   p_kst 3.234000e-01   p_cons 3.179000e-01   p_joint 3.603000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF480.2_1624_10000_0.3234_0.3179_0.3603.png
                gene_name: ZNF480
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 90 percent done.
ZNF488
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.073996e-02	ci left: 7.730669e-01	ci right 7.893690e-01	k: 7813	n:10000
KS ci ratio: 2.829005e-02	ci left: 6.481042e-01	ci right 6.668040e-01	k: 6575	n:10000
ZNF488   10000 perm   1 sec   (6677 perm/sec)   p_kst 6.575000e-01   p_cons 7.813000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF488.2_1027_10000_0.6575_0.7813_1.png
                gene_name: ZNF488
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
ZNF496
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.013027e-03	ci left: 9.739755e-01	ci right 9.799422e-01	k: 9771	n:10000
Cons ci ratio: 9.883601e-03	ci left: 9.354766e-01	ci right 9.448650e-01	k: 9403	n:10000
KS ci ratio: 1.875175e-02	ci left: 8.060295e-01	ci right 8.213873e-01	k: 8138	n:10000
ZNF496   10000 perm   2 sec   (5636 perm/sec)   p_kst 8.138000e-01   p_cons 9.403000e-01   p_joint 9.771000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF496.2_1792_10000_0.8138_0.9403_0.9771.png
                gene_name: ZNF496
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.81 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.98 

Current progress: 93 percent done.
ZNF500
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.025877e-02	ci left: 4.767588e-01	ci right 4.964490e-01	k: 4866	n:10000
Cons ci ratio: 3.353212e-02	ci left: 5.676469e-01	ci right 5.871080e-01	k: 5774	n:10000
KS ci ratio: 1.281149e-01	ci left: 8.009076e-02	ci right 9.115204e-02	k: 855	n:10000
ZNF500   10000 perm   1 sec   (6674 perm/sec)   p_kst 8.550000e-02   p_cons 5.774000e-01   p_joint 4.866000e-01

Joint ci ratio: 2.884525e-02	ci left: 4.731043e-01	ci right 4.870015e-01	k: 9601	n:20000
Cons ci ratio: 2.375352e-02	ci left: 5.696665e-01	ci right 5.834113e-01	k: 11531	n:20000
KS ci ratio: 9.156119e-02	ci left: 8.009344e-02	ci right 8.782802e-02	k: 1678	n:20000
ZNF500   20000 perm   4 sec   (5264 perm/sec)   p_kst 8.390000e-02   p_cons 5.765500e-01   p_joint 4.800500e-01

Outputting figure to mutsig2_images.part000000000197/ZNF500.2_1463_20000_0.0839_0.57655_0.48005.png
                gene_name: ZNF500
               theta_stop: 0.092 
                    nperm: 20000 
                     p_ks: 0.084 
        ci_ks_bounds_left: 0.080 
       ci_ks_bounds_right: 0.088 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 95 percent done.
ZNF513
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.292744e-01	ci left: 7.873206e-02	ci right 8.971158e-02	k: 841	n:10000
Cons ci ratio: 2.067437e-01	ci left: 3.110398e-02	ci right 3.837033e-02	k: 346	n:10000
KS ci ratio: 1.350161e-02	ci left: 8.878013e-01	ci right 8.999681e-01	k: 8940	n:10000
ZNF513   10000 perm   2 sec   (6103 perm/sec)   p_kst 8.940000e-01   p_cons 3.460000e-02   p_joint 8.410000e-02

Joint ci ratio: 8.625504e-02	ci left: 8.954852e-02	ci right 9.767008e-02	k: 1871	n:20000
Cons ci ratio: 1.484233e-01	ci left: 3.119383e-02	ci right 3.624291e-02	k: 673	n:20000
KS ci ratio: 9.454942e-03	ci left: 8.914831e-01	ci right 9.000015e-01	k: 17916	n:20000
ZNF513   20000 perm   4 sec   (5332 perm/sec)   p_kst 8.958000e-01   p_cons 3.365000e-02   p_joint 9.355000e-02

Joint ci ratio: 6.850609e-02	ci left: 9.501903e-02	ci right 1.017923e-01	k: 2951	n:30000
Cons ci ratio: 1.193079e-01	ci left: 3.265748e-02	ci right 3.683325e-02	k: 1041	n:30000
KS ci ratio: 7.650496e-03	ci left: 8.939788e-01	ci right 9.008774e-01	k: 26924	n:30000
ZNF513   30000 perm   6 sec   (4951 perm/sec)   p_kst 8.974667e-01   p_cons 3.470000e-02   p_joint 9.836667e-02

Joint ci ratio: 7.595828e-02	ci left: 6.004894e-02	ci right 6.481482e-02	k: 2496	n:40000
Cons ci ratio: 1.029917e-01	ci left: 3.314718e-02	ci right 3.677074e-02	k: 1397	n:40000
KS ci ratio: 6.637659e-03	ci left: 8.941065e-01	ci right 9.000857e-01	k: 35885	n:40000
ZNF513   40000 perm   8 sec   (4771 perm/sec)   p_kst 8.971250e-01   p_cons 3.492500e-02   p_joint 6.240000e-02

Joint ci ratio: 6.850581e-02	ci left: 5.935066e-02	ci right 6.358043e-02	k: 3072	n:50000
Cons ci ratio: 9.285082e-02	ci left: 3.281958e-02	ci right 3.603477e-02	k: 1720	n:50000
KS ci ratio: 5.940838e-03	ci left: 8.943026e-01	ci right 8.996512e-01	k: 44850	n:50000
ZNF513   50000 perm   11 sec   (4656 perm/sec)   p_kst 8.970000e-01   p_cons 3.440000e-02   p_joint 6.144000e-02

Outputting figure to mutsig2_images.part000000000197/ZNF513.2_1642_50000_0.897_0.0344_0.06144.png
                gene_name: ZNF513
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.034 
      ci_cons_bounds_left: 0.033 
     ci_cons_bounds_right: 0.036 
                  p_joint: 0.061 
     ci_joint_bounds_left: 0.059 
    ci_joint_bounds_right: 0.064 

Current progress: 96 percent done.
ZNF514
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.387413e-02	ci left: 2.115188e-01	ci right 2.278448e-01	k: 2196	n:10000
Cons ci ratio: 1.172700e-01	ci left: 9.457666e-02	ci right 1.064572e-01	k: 1004	n:10000
KS ci ratio: 7.158161e-02	ci left: 2.223737e-01	ci right 2.389835e-01	k: 2306	n:10000
ZNF514   10000 perm   2 sec   (5899 perm/sec)   p_kst 2.306000e-01   p_cons 1.004000e-01   p_joint 2.196000e-01

Joint ci ratio: 5.413679e-02	ci left: 2.020462e-01	ci right 2.133389e-01	k: 4153	n:20000
Cons ci ratio: 8.186402e-02	ci left: 9.862400e-02	ci right 1.070919e-01	k: 2056	n:20000
KS ci ratio: 5.147250e-02	ci left: 2.189803e-01	ci right 2.305998e-01	k: 4495	n:20000
ZNF514   20000 perm   4 sec   (5451 perm/sec)   p_kst 2.247500e-01   p_cons 1.028000e-01   p_joint 2.076500e-01

Outputting figure to mutsig2_images.part000000000197/ZNF514.2_1215_20000_0.22475_0.1028_0.20765.png
                gene_name: ZNF514
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.099 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.21 

Current progress: 97 percent done.
ZNF517
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.222147e-02	ci left: 7.482674e-01	ci right 7.651828e-01	k: 7568	n:10000
KS ci ratio: 6.651176e-02	ci left: 2.491493e-01	ci right 2.663920e-01	k: 2577	n:10000
ZNF517   10000 perm   2 sec   (6283 perm/sec)   p_kst 2.577000e-01   p_cons 7.568000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000197/ZNF517.2_1495_10000_0.2577_0.7568_1.png
                gene_name: ZNF517
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 99 percent done.
ZNF527
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.507522e-02	ci left: 5.454954e-01	ci right 5.650724e-01	k: 5553	n:10000
Cons ci ratio: 4.473089e-02	ci left: 4.245555e-01	ci right 4.440828e-01	k: 4343	n:10000
KS ci ratio: 6.422738e-02	ci left: 2.626030e-01	ci right 2.801304e-01	k: 2713	n:10000
ZNF527   10000 perm   2 sec   (5776 perm/sec)   p_kst 2.713000e-01   p_cons 4.343000e-01   p_joint 5.553000e-01

Outputting figure to mutsig2_images.part000000000197/ZNF527.2_1846_10000_0.2713_0.4343_0.5553.png
                gene_name: ZNF527
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000197
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 197 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1649>
Subject: Job 9894217: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1649>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000198> was used as the working directory.
Started at Sat Oct  6 00:36:42 2012
Results reported at Sat Oct  6 00:49:12 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000198.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000198.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 198  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000198.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    788.61 sec.
    Max Memory :      3519 MB
    Max Swap   :      5903 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
198
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 198
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 198: processing genes 17761 - 17850
Calculating significance of each gene.
Using projection method.
17761	ZNF529	2.711295e-01
17762	ZNF530	2.470300e-01
17763	ZNF532	9.383060e-01
17764	ZNF534	2.242232e-01
17765	ZNF536	6.204956e-03
17766	ZNF540	3.336895e-03
17767	ZNF543	6.666861e-02
17768	ZNF544	8.565375e-01
17769	ZNF546	5.358904e-01
17770	ZNF547	2.560482e-01
17771	ZNF548	5.657107e-01
17772	ZNF549	3.453675e-01
17773	ZNF550	1
17774	ZNF551	1.415352e-01
17775	ZNF552	1.571037e-01
17776	ZNF554	7.968818e-01
17777	ZNF555	1.062101e-01
17778	ZNF556	1.025870e-01
17779	ZNF557	7.035661e-01
17780	ZNF558	4.050119e-01
17781	ZNF559	6.936272e-03
17782	ZNF560	1.311736e-03
17783	ZNF561	4.019796e-01
17784	ZNF562	5.025597e-01
17785	ZNF563	5.606145e-01
17786	ZNF564	1.965753e-01
17787	ZNF565	4.800516e-01
17788	ZNF566	7.846899e-01
17789	ZNF567	8.515683e-02
17790	ZNF568	1.310611e-03
17791	ZNF569	1.088174e-02
17792	ZNF57	2.259600e-01
17793	ZNF570	2.467674e-01
17794	ZNF571	1.114539e-01
17795	ZNF572	4.061312e-01
17796	ZNF573	4.184593e-02
17797	ZNF574	9.423024e-01
17798	ZNF575	6.579453e-01
17799	ZNF576	1
17800	ZNF577	1.140740e-01
17801	ZNF578	2.208629e-02
17802	ZNF580	1
17803	ZNF581	6.948305e-01
17804	ZNF582	1.194992e-01
17805	ZNF583	2.550972e-03
17806	ZNF584	6.466853e-01
17807	ZNF585A	3.051073e-03
17808	ZNF585B	7.545902e-01
17809	ZNF586	8.931118e-02
17810	ZNF587	8.805512e-01
17811	ZNF589	7.801281e-01
17812	ZNF592	4.153209e-01
17813	ZNF593	4.599970e-04
17814	ZNF594	8.007277e-01
17815	ZNF595	2.385459e-01
17816	ZNF596	6.859639e-02
17817	ZNF597	7.955754e-01
17818	ZNF598	1
17819	ZNF599	3.729636e-02
17820	ZNF600	3.295840e-01
17821	ZNF605	3.374085e-01
17822	ZNF606	6.366206e-01
17823	ZNF607	7.947916e-02
17824	ZNF608	7.912186e-01
17825	ZNF609	2.188136e-01
17826	ZNF610	5.917568e-02
17827	ZNF611	7.527099e-02
17828	ZNF613	5.866252e-01
17829	ZNF614	5.574078e-01
17830	ZNF615	1.257523e-01
17831	ZNF616	5.585924e-02
17832	ZNF618	9.367324e-01
17833	ZNF619	7.950233e-02
17834	ZNF620	6.375530e-02
17835	ZNF621	3.236604e-01
17836	ZNF622	4.859795e-01
17837	ZNF623	4.896074e-01
17838	ZNF624	2.293066e-01
17839	ZNF625	5.587921e-02
17840	ZNF626	3.550056e-01
17841	ZNF627	4.243483e-01
17842	ZNF628	5.651556e-01
17843	ZNF629	9.251823e-01
17844	ZNF630	5.976920e-01
17845	ZNF638	1.704821e-01
17846	ZNF639	4.781845e-01
17847	ZNF641	7.177119e-01
17848	ZNF642	7.275208e-01
17849	ZNF643	2.690462e-01
17850	ZNF644	5.662487e-01
Done

Running MutSig 2:
Scatter job 198: processing genes 17761 - 17850
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF585A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.736201e-01	ci left: 4.427577e-02	ci right 5.278970e-02	k: 484	n:10000
Cons ci ratio: 4.747495e-02	ci left: 3.956563e-01	ci right 4.149989e-01	k: 4053	n:10000
KS ci ratio: 2.765105e-01	ci left: 1.697368e-02	ci right 2.251108e-02	k: 196	n:10000
ZNF585A   10000 perm   2 sec   (4813 perm/sec)   p_kst 1.960000e-02   p_cons 4.053000e-01   p_joint 4.840000e-02

Joint ci ratio: 1.154500e-01	ci left: 5.134529e-02	ci right 5.768501e-02	k: 1089	n:20000
Cons ci ratio: 3.173228e-02	ci left: 4.258686e-01	ci right 4.396509e-01	k: 8655	n:20000
KS ci ratio: 1.950228e-01	ci left: 1.786671e-02	ci right 2.177465e-02	k: 395	n:20000
ZNF585A   20000 perm   6 sec   (3087 perm/sec)   p_kst 1.975000e-02   p_cons 4.327500e-01   p_joint 5.445000e-02

Joint ci ratio: 9.262872e-02	ci left: 5.371809e-02	ci right 5.896824e-02	k: 1689	n:30000
Cons ci ratio: 2.584771e-02	ci left: 4.283150e-01	ci right 4.395645e-01	k: 13018	n:30000
KS ci ratio: 1.578862e-01	ci left: 1.854184e-02	ci right 2.175204e-02	k: 603	n:30000
ZNF585A   30000 perm   9 sec   (3361 perm/sec)   p_kst 2.010000e-02   p_cons 4.339333e-01   p_joint 5.630000e-02

Joint ci ratio: 7.620269e-02	ci left: 5.968063e-02	ci right 6.443319e-02	k: 2481	n:40000
Cons ci ratio: 2.238435e-02	ci left: 4.290855e-01	ci right 4.388241e-01	k: 17358	n:40000
KS ci ratio: 1.365035e-01	ci left: 1.881957e-02	ci right 2.160069e-02	k: 807	n:40000
ZNF585A   40000 perm   11 sec   (3503 perm/sec)   p_kst 2.017500e-02   p_cons 4.339500e-01   p_joint 6.202500e-02

Joint ci ratio: 8.500052e-02	ci left: 3.906312e-02	ci right 4.255045e-02	k: 2039	n:50000
Cons ci ratio: 2.041039e-02	ci left: 4.201821e-01	ci right 4.288667e-01	k: 21226	n:50000
KS ci ratio: 1.204004e-01	ci left: 1.950873e-02	ci right 2.202734e-02	k: 1037	n:50000
ZNF585A   50000 perm   14 sec   (3574 perm/sec)   p_kst 2.074000e-02   p_cons 4.245200e-01   p_joint 4.078000e-02

Joint ci ratio: 7.549686e-02	ci left: 4.137427e-02	ci right 4.463678e-02	k: 2579	n:60000
Cons ci ratio: 1.920285e-02	ci left: 4.059109e-01	ci right 4.137978e-01	k: 24591	n:60000
KS ci ratio: 1.081328e-01	ci left: 2.027316e-02	ci right 2.260679e-02	k: 1285	n:60000
ZNF585A   60000 perm   17 sec   (3604 perm/sec)   p_kst 2.141667e-02   p_cons 4.098500e-01   p_joint 4.298333e-02

Joint ci ratio: 6.816366e-02	ci left: 4.357441e-02	ci right 4.666344e-02	k: 3157	n:70000
Cons ci ratio: 1.782237e-02	ci left: 4.050122e-01	ci right 4.123097e-01	k: 28606	n:70000
KS ci ratio: 9.978361e-02	ci left: 2.049399e-02	ci right 2.266021e-02	k: 1509	n:70000
ZNF585A   70000 perm   19 sec   (3614 perm/sec)   p_kst 2.155714e-02   p_cons 4.086571e-01   p_joint 4.510000e-02

Outputting figure to mutsig2_images.part000000000198/ZNF585A.16_2157_70000_0.021557_0.40866_0.0451.png
                gene_name: ZNF585A
               theta_stop: 0.100 
                    nperm: 70000 
                     p_ks: 0.022 
        ci_ks_bounds_left: 0.020 
       ci_ks_bounds_right: 0.023 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.045 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 1 percent done.
ZNF536
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.160472e-02	ci left: 5.963432e-01	ci right 6.155950e-01	k: 6060	n:10000
KS ci ratio: 2.490568e-02	ci left: 7.034174e-01	ci right 7.212588e-01	k: 7124	n:10000
ZNF536   10000 perm   2 sec   (4687 perm/sec)   p_kst 7.124000e-01   p_cons 6.060000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF536.15_3919_10000_0.7124_0.606_1.png
                gene_name: ZNF536
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 3 percent done.
ZNF546
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.107303e-02	ci left: 4.667689e-01	ci right 4.864447e-01	k: 4766	n:10000
Cons ci ratio: 1.623630e-02	ci left: 8.465185e-01	ci right 8.604749e-01	k: 8536	n:10000
KS ci ratio: 7.017888e-02	ci left: 2.293843e-01	ci right 2.461688e-01	k: 2377	n:10000
ZNF546   10000 perm   2 sec   (5232 perm/sec)   p_kst 2.377000e-01   p_cons 8.536000e-01   p_joint 4.766000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF546.15_2531_10000_0.2377_0.8536_0.4766.png
                gene_name: ZNF546
               theta_stop: 0.070 
                    nperm: 10000 
                     p_ks: 0.24 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.25 
                   p_cons: 0.85 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 0.48 
     ci_joint_bounds_left: 0.47 
    ci_joint_bounds_right: 0.49 

Current progress: 4 percent done.
ZNF560
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.165997e-02	ci left: 7.576765e-01	ci right 7.743683e-01	k: 7661	n:10000
Cons ci ratio: 2.930814e-02	ci left: 6.319101e-01	ci right 6.508075e-01	k: 6414	n:10000
KS ci ratio: 3.070545e-02	ci left: 6.101014e-01	ci right 6.292288e-01	k: 6197	n:10000
ZNF560   10000 perm   2 sec   (5014 perm/sec)   p_kst 6.197000e-01   p_cons 6.414000e-01   p_joint 7.661000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF560.15_2405_10000_0.6197_0.6414_0.7661.png
                gene_name: ZNF560
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.63 
                   p_cons: 0.64 
      ci_cons_bounds_left: 0.63 
     ci_cons_bounds_right: 0.65 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.76 
    ci_joint_bounds_right: 0.77 

Current progress: 5 percent done.
ZNF540
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.226054e-02	ci left: 4.525901e-01	ci right 4.722318e-01	k: 4624	n:10000
Cons ci ratio: 2.110964e-02	ci left: 7.668886e-01	ci right 7.833508e-01	k: 7752	n:10000
KS ci ratio: 6.776877e-02	ci left: 2.421299e-01	ci right 2.592155e-01	k: 2506	n:10000
ZNF540   10000 perm   2 sec   (5478 perm/sec)   p_kst 2.506000e-01   p_cons 7.752000e-01   p_joint 4.624000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF540.12_1999_10000_0.2506_0.7752_0.4624.png
                gene_name: ZNF540
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 6 percent done.
ZNF568
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.046495e-02	ci left: 6.138185e-01	ci right 6.329096e-01	k: 6234	n:10000
Cons ci ratio: 4.876921e-02	ci left: 3.828123e-01	ci right 4.020504e-01	k: 3924	n:10000
KS ci ratio: 2.815829e-02	ci left: 6.502174e-01	ci right 6.688896e-01	k: 6596	n:10000
ZNF568   10000 perm   2 sec   (4951 perm/sec)   p_kst 6.596000e-01   p_cons 3.924000e-01   p_joint 6.234000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF568.12_1955_10000_0.6596_0.3924_0.6234.png
                gene_name: ZNF568
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 8 percent done.
ZNF569
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.594406e-02	ci left: 3.199905e-01	ci right 3.385090e-01	k: 3292	n:10000
Cons ci ratio: 3.703552e-02	ci left: 5.184588e-01	ci right 5.381247e-01	k: 5283	n:10000
KS ci ratio: 6.526634e-02	ci left: 2.563695e-01	ci right 2.737676e-01	k: 2650	n:10000
ZNF569   10000 perm   2 sec   (5439 perm/sec)   p_kst 2.650000e-01   p_cons 5.283000e-01   p_joint 3.292000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF569.12_2077_10000_0.265_0.5283_0.3292.png
                gene_name: ZNF569
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 9 percent done.
ZNF616
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.785336e-02	ci left: 5.075522e-01	ci right 5.272376e-01	k: 5174	n:10000
Cons ci ratio: 7.409025e-02	ci left: 2.105324e-01	ci right 2.268318e-01	k: 2186	n:10000
KS ci ratio: 3.411267e-02	ci left: 5.592250e-01	ci right 5.787348e-01	k: 5690	n:10000
ZNF616   10000 perm   2 sec   (5379 perm/sec)   p_kst 5.690000e-01   p_cons 2.186000e-01   p_joint 5.174000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF616.12_2358_10000_0.569_0.2186_0.5174.png
                gene_name: ZNF616
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 10 percent done.
ZNF638
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.663624e-02	ci left: 5.238638e-01	ci right 5.435165e-01	k: 5337	n:10000
Cons ci ratio: 3.380079e-02	ci left: 5.637364e-01	ci right 5.832208e-01	k: 5735	n:10000
KS ci ratio: 6.039576e-02	ci left: 2.873607e-01	ci right 3.053581e-01	k: 2963	n:10000
ZNF638   10000 perm   3 sec   (3857 perm/sec)   p_kst 2.963000e-01   p_cons 5.735000e-01   p_joint 5.337000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF638.12_6045_10000_0.2963_0.5735_0.5337.png
                gene_name: ZNF638
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.30 
        ci_ks_bounds_left: 0.29 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.53 
     ci_joint_bounds_left: 0.52 
    ci_joint_bounds_right: 0.54 

Current progress: 12 percent done.
ZNF583
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.065542e-01	ci left: 1.128131e-01	ci right 1.256096e-01	k: 1191	n:10000
Cons ci ratio: 5.508155e-02	ci left: 3.268405e-01	ci right 3.454551e-01	k: 3361	n:10000
KS ci ratio: 1.413621e-01	ci left: 6.633192e-02	ci right 7.651945e-02	k: 713	n:10000
ZNF583   10000 perm   2 sec   (4806 perm/sec)   p_kst 7.130000e-02   p_cons 3.361000e-01   p_joint 1.191000e-01

Joint ci ratio: 8.580069e-02	ci left: 9.043103e-02	ci right 9.858730e-02	k: 1889	n:20000
Cons ci ratio: 3.790734e-02	ci left: 3.417443e-01	ci right 3.549998e-01	k: 6967	n:20000
KS ci ratio: 9.644178e-02	ci left: 7.260863e-02	ci right 8.001510e-02	k: 1525	n:20000
ZNF583   20000 perm   4 sec   (4539 perm/sec)   p_kst 7.625000e-02   p_cons 3.483500e-01   p_joint 9.445000e-02

Outputting figure to mutsig2_images.part000000000198/ZNF583.11_1726_20000_0.07625_0.34835_0.09445.png
                gene_name: ZNF583
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.094 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.099 

Current progress: 13 percent done.
ZNF592
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.037572e-01	ci left: 1.183824e-01	ci right 1.314370e-01	k: 1248	n:10000
Cons ci ratio: 1.152409e-01	ci left: 9.769325e-02	ci right 1.097387e-01	k: 1036	n:10000
KS ci ratio: 8.246634e-02	ci left: 1.766450e-01	ci right 1.919393e-01	k: 1842	n:10000
ZNF592   10000 perm   2 sec   (4841 perm/sec)   p_kst 1.842000e-01   p_cons 1.036000e-01   p_joint 1.248000e-01

Joint ci ratio: 7.363845e-02	ci left: 1.195114e-01	ci right 1.286982e-01	k: 2481	n:20000
Cons ci ratio: 8.206427e-02	ci left: 9.818223e-02	ci right 1.066338e-01	k: 2047	n:20000
KS ci ratio: 5.795699e-02	ci left: 1.807272e-01	ci right 1.915642e-01	k: 3722	n:20000
ZNF592   20000 perm   5 sec   (4401 perm/sec)   p_kst 1.861000e-01   p_cons 1.023500e-01   p_joint 1.240500e-01

Outputting figure to mutsig2_images.part000000000198/ZNF592.10_3836_20000_0.1861_0.10235_0.12405.png
                gene_name: ZNF592
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.098 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 14 percent done.
ZNF607
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.612419e-02	ci left: 5.308720e-01	ci right 5.505042e-01	k: 5407	n:10000
KS ci ratio: 1.608669e-02	ci left: 8.488632e-01	ci right 8.627288e-01	k: 8559	n:10000
ZNF607   10000 perm   2 sec   (5383 perm/sec)   p_kst 8.559000e-01   p_cons 5.407000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF607.10_2107_10000_0.8559_0.5407_1.png
                gene_name: ZNF607
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 15 percent done.
ZNF599
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.221143e-02	ci left: 9.058655e-01	ci right 9.170934e-01	k: 9116	n:10000
Cons ci ratio: 3.006410e-02	ci left: 6.200485e-01	ci right 6.390760e-01	k: 6296	n:10000
KS ci ratio: 3.099272e-02	ci left: 6.056818e-01	ci right 6.248510e-01	k: 6153	n:10000
ZNF599   10000 perm   2 sec   (5287 perm/sec)   p_kst 6.153000e-01   p_cons 6.296000e-01   p_joint 9.116000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF599.9_1783_10000_0.6153_0.6296_0.9116.png
                gene_name: ZNF599
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.62 
        ci_ks_bounds_left: 0.61 
       ci_ks_bounds_right: 0.62 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 0.91 
     ci_joint_bounds_left: 0.91 
    ci_joint_bounds_right: 0.92 

Current progress: 17 percent done.
ZNF600
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.805805e-02	ci left: 6.518275e-01	ci right 6.704785e-01	k: 6612	n:10000
Cons ci ratio: 3.179031e-02	ci left: 5.935323e-01	ci right 6.128076e-01	k: 6032	n:10000
KS ci ratio: 3.694647e-02	ci left: 5.196599e-01	ci right 5.393230e-01	k: 5295	n:10000
ZNF600   10000 perm   2 sec   (5201 perm/sec)   p_kst 5.295000e-01   p_cons 6.032000e-01   p_joint 6.612000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF600.9_2173_10000_0.5295_0.6032_0.6612.png
                gene_name: ZNF600
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 18 percent done.
ZNF611
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.906704e-02	ci left: 3.799258e-01	ci right 3.991386e-01	k: 3895	n:10000
Cons ci ratio: 5.421677e-02	ci left: 3.338913e-01	ci right 3.526001e-01	k: 3432	n:10000
KS ci ratio: 6.798590e-02	ci left: 2.409439e-01	ci right 2.580023e-01	k: 2494	n:10000
ZNF611   10000 perm   2 sec   (5457 perm/sec)   p_kst 2.494000e-01   p_cons 3.432000e-01   p_joint 3.895000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF611.9_2130_10000_0.2494_0.3432_0.3895.png
                gene_name: ZNF611
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 19 percent done.
ZNF615
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.929473e-02	ci left: 3.777363e-01	ci right 3.969293e-01	k: 3873	n:10000
Cons ci ratio: 5.999280e-02	ci left: 2.901356e-01	ci right 3.081815e-01	k: 2991	n:10000
KS ci ratio: 4.482202e-02	ci left: 4.235584e-01	ci right 4.430805e-01	k: 4333	n:10000
ZNF615   10000 perm   2 sec   (5249 perm/sec)   p_kst 4.333000e-01   p_cons 2.991000e-01   p_joint 3.873000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF615.9_2212_10000_0.4333_0.2991_0.3873.png
                gene_name: ZNF615
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.38 
    ci_joint_bounds_right: 0.40 

Current progress: 21 percent done.
ZNF549
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.139078e-02	ci left: 9.167762e-01	ci right 9.273764e-01	k: 9222	n:10000
Cons ci ratio: 4.097438e-02	ci left: 4.679675e-01	ci right 4.876454e-01	k: 4778	n:10000
KS ci ratio: 1.000608e-02	ci left: 9.340264e-01	ci right 9.435160e-01	k: 9389	n:10000
ZNF549   10000 perm   2 sec   (5432 perm/sec)   p_kst 9.389000e-01   p_cons 4.778000e-01   p_joint 9.222000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF549.8_1896_10000_0.9389_0.4778_0.9222.png
                gene_name: ZNF549
               theta_stop: 0.041 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.48 
      ci_cons_bounds_left: 0.47 
     ci_cons_bounds_right: 0.49 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 22 percent done.
ZNF551
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.231794e-02	ci left: 2.745815e-01	ci right 2.923448e-01	k: 2834	n:10000
Cons ci ratio: 2.355520e-02	ci left: 7.259294e-01	ci right 7.433338e-01	k: 7347	n:10000
KS ci ratio: 1.150553e-01	ci left: 9.798552e-02	ci right 1.100463e-01	k: 1039	n:10000
ZNF551   10000 perm   2 sec   (5859 perm/sec)   p_kst 1.039000e-01   p_cons 7.347000e-01   p_joint 2.834000e-01

Joint ci ratio: 5.791877e-02	ci left: 1.809249e-01	ci right 1.917665e-01	k: 3726	n:20000
Cons ci ratio: 1.657300e-02	ci left: 7.304867e-01	ci right 7.427445e-01	k: 14733	n:20000
KS ci ratio: 8.153307e-02	ci left: 9.936033e-02	ci right 1.078553e-01	k: 2071	n:20000
ZNF551   20000 perm   4 sec   (5231 perm/sec)   p_kst 1.035500e-01   p_cons 7.366500e-01   p_joint 1.863000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF551.8_1977_20000_0.10355_0.73665_0.1863.png
                gene_name: ZNF551
               theta_stop: 0.082 
                    nperm: 20000 
                     p_ks: 0.10 
        ci_ks_bounds_left: 0.099 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.74 
      ci_cons_bounds_left: 0.73 
     ci_cons_bounds_right: 0.74 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 23 percent done.
ZNF609
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.200320e-02	ci left: 5.903202e-01	ci right 6.096215e-01	k: 6000	n:10000
Cons ci ratio: 6.691387e-02	ci left: 2.468751e-01	ci right 2.640676e-01	k: 2554	n:10000
KS ci ratio: 8.595771e-03	ci left: 9.499184e-01	ci right 9.582145e-01	k: 9542	n:10000
ZNF609   10000 perm   2 sec   (4452 perm/sec)   p_kst 9.542000e-01   p_cons 2.554000e-01   p_joint 6.000000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF609.8_4268_10000_0.9542_0.2554_0.6.png
                gene_name: ZNF609
               theta_stop: 0.067 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 24 percent done.
ZNF543
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.093290e-02	ci left: 3.624157e-01	ci right 3.814590e-01	k: 3719	n:10000
Cons ci ratio: 7.072525e-02	ci left: 2.266191e-01	ci right 2.433355e-01	k: 2349	n:10000
KS ci ratio: 5.106395e-02	ci left: 3.612223e-01	ci right 3.802530e-01	k: 3707	n:10000
ZNF543   10000 perm   2 sec   (5580 perm/sec)   p_kst 3.707000e-01   p_cons 2.349000e-01   p_joint 3.719000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF543.7_1819_10000_0.3707_0.2349_0.3719.png
                gene_name: ZNF543
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.36 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.37 
     ci_joint_bounds_left: 0.36 
    ci_joint_bounds_right: 0.38 

Current progress: 26 percent done.
ZNF559
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.745238e-02	ci left: 8.271707e-01	ci right 8.418339e-01	k: 8346	n:10000
KS ci ratio: 3.319667e-02	ci left: 5.725610e-01	ci right 5.919910e-01	k: 5823	n:10000
ZNF559   10000 perm   2 sec   (5454 perm/sec)   p_kst 5.823000e-01   p_cons 8.346000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF559.7_1633_10000_0.5823_0.8346_1.png
                gene_name: ZNF559
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.84 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 27 percent done.
ZNF564
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.384612e-02	ci left: 3.369706e-01	ci right 3.557190e-01	k: 3463	n:10000
Cons ci ratio: 2.118228e-02	ci left: 7.656735e-01	ci right 7.821666e-01	k: 7740	n:10000
KS ci ratio: 7.733613e-02	ci left: 1.964346e-01	ci right 2.123380e-01	k: 2043	n:10000
ZNF564   10000 perm   2 sec   (5628 perm/sec)   p_kst 2.043000e-01   p_cons 7.740000e-01   p_joint 3.463000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF564.7_1678_10000_0.2043_0.774_0.3463.png
                gene_name: ZNF564
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.77 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 28 percent done.
ZNF573
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.705415e-02	ci left: 3.999392e-01	ci right 4.193135e-01	k: 4096	n:10000
Cons ci ratio: 3.101891e-02	ci left: 6.052801e-01	ci right 6.244529e-01	k: 6149	n:10000
KS ci ratio: 7.142066e-02	ci left: 2.231634e-01	ci right 2.397933e-01	k: 2314	n:10000
ZNF573   10000 perm   2 sec   (5198 perm/sec)   p_kst 2.314000e-01   p_cons 6.149000e-01   p_joint 4.096000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF573.7_2139_10000_0.2314_0.6149_0.4096.png
                gene_name: ZNF573
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.62 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 29 percent done.
ZNF585B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.962295e-02	ci left: 2.927127e-01	ci right 3.108030e-01	k: 3017	n:10000
Cons ci ratio: 3.460899e-02	ci left: 5.521087e-01	ci right 5.716552e-01	k: 5619	n:10000
KS ci ratio: 9.397593e-02	ci left: 1.411914e-01	ci right 1.552142e-01	k: 1481	n:10000
ZNF585B   10000 perm   2 sec   (5452 perm/sec)   p_kst 1.481000e-01   p_cons 5.619000e-01   p_joint 3.017000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF585B.7_2326_10000_0.1481_0.5619_0.3017.png
                gene_name: ZNF585B
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.56 
      ci_cons_bounds_left: 0.55 
     ci_cons_bounds_right: 0.57 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 31 percent done.
ZNF610
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.819591e-02	ci left: 6.496136e-01	ci right 6.682937e-01	k: 6590	n:10000
Cons ci ratio: 4.401905e-02	ci left: 4.324339e-01	ci right 4.519998e-01	k: 4422	n:10000
KS ci ratio: 2.475992e-02	ci left: 7.058389e-01	ci right 7.236358e-01	k: 7148	n:10000
ZNF610   10000 perm   2 sec   (6086 perm/sec)   p_kst 7.148000e-01   p_cons 4.422000e-01   p_joint 6.590000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF610.7_1405_10000_0.7148_0.4422_0.659.png
                gene_name: ZNF610
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 32 percent done.
ZNF619
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.905474e-01	ci left: 3.672071e-02	ci right 4.454977e-02	k: 405	n:10000
Cons ci ratio: 2.625735e-01	ci left: 1.893425e-02	ci right 2.474894e-02	k: 217	n:10000
KS ci ratio: 1.138375e-01	ci left: 9.993440e-02	ci right 1.120962e-01	k: 1059	n:10000
ZNF619   10000 perm   2 sec   (5076 perm/sec)   p_kst 1.059000e-01   p_cons 2.170000e-02   p_joint 4.050000e-02

Joint ci ratio: 1.101510e-01	ci left: 5.626075e-02	ci right 6.286802e-02	k: 1190	n:20000
Cons ci ratio: 1.839540e-01	ci left: 2.015504e-02	ci right 2.428549e-02	k: 443	n:20000
KS ci ratio: 8.015886e-02	ci left: 1.025028e-01	ci right 1.111119e-01	k: 2135	n:20000
ZNF619   20000 perm   4 sec   (4596 perm/sec)   p_kst 1.067500e-01   p_cons 2.215000e-02   p_joint 5.950000e-02

Joint ci ratio: 1.316602e-01	ci left: 2.680750e-02	ci right 3.061784e-02	k: 860	n:30000
Cons ci ratio: 1.412388e-01	ci left: 2.326276e-02	ci right 2.683003e-02	k: 750	n:30000
KS ci ratio: 6.646459e-02	ci left: 1.004361e-01	ci right 1.073741e-01	k: 3116	n:30000
ZNF619   30000 perm   7 sec   (4411 perm/sec)   p_kst 1.038667e-01   p_cons 2.500000e-02   p_joint 2.866667e-02

Joint ci ratio: 1.034527e-01	ci left: 3.285467e-02	ci right 3.646330e-02	k: 1385	n:40000
Cons ci ratio: 1.291868e-01	ci left: 2.104469e-02	ci right 2.397520e-02	k: 899	n:40000
KS ci ratio: 5.925310e-02	ci left: 9.569515e-02	ci right 1.015633e-01	k: 3944	n:40000
ZNF619   40000 perm   9 sec   (4286 perm/sec)   p_kst 9.860000e-02   p_cons 2.247500e-02   p_joint 3.462500e-02

Joint ci ratio: 9.988940e-02	ci left: 2.838549e-02	ci right 3.138942e-02	k: 1493	n:50000
Cons ci ratio: 1.155484e-01	ci left: 2.119844e-02	ci right 2.381741e-02	k: 1124	n:50000
KS ci ratio: 5.311877e-02	ci left: 9.560498e-02	ci right 1.008418e-01	k: 4910	n:50000
ZNF619   50000 perm   12 sec   (4187 perm/sec)   p_kst 9.820000e-02   p_cons 2.248000e-02   p_joint 2.986000e-02

Joint ci ratio: 8.761773e-02	ci left: 3.086706e-02	ci right 3.371174e-02	k: 1936	n:60000
Cons ci ratio: 1.020894e-01	ci left: 2.275760e-02	ci right 2.522207e-02	k: 1438	n:60000
KS ci ratio: 4.818836e-02	ci left: 9.693460e-02	ci right 1.017376e-01	k: 5959	n:60000
ZNF619   60000 perm   15 sec   (4103 perm/sec)   p_kst 9.931667e-02   p_cons 2.396667e-02   p_joint 3.226667e-02

Joint ci ratio: 8.460163e-02	ci left: 2.849679e-02	ci right 3.102810e-02	k: 2082	n:70000
Cons ci ratio: 9.436790e-02	ci left: 2.292071e-02	ci right 2.520469e-02	k: 1683	n:70000
KS ci ratio: 4.478682e-02	ci left: 9.642932e-02	ci right 1.008612e-01	k: 6904	n:70000
ZNF619   70000 perm   17 sec   (4028 perm/sec)   p_kst 9.862857e-02   p_cons 2.404286e-02   p_joint 2.974286e-02

Outputting figure to mutsig2_images.part000000000198/ZNF619.7_1893_70000_0.098629_0.024043_0.029743.png
                gene_name: ZNF619
               theta_stop: 0.094 
                    nperm: 70000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.096 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.024 
      ci_cons_bounds_left: 0.023 
     ci_cons_bounds_right: 0.025 
                  p_joint: 0.030 
     ci_joint_bounds_left: 0.028 
    ci_joint_bounds_right: 0.031 

Current progress: 33 percent done.
ZNF567
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.128802e-02	ci left: 6.011627e-01	ci right 6.203727e-01	k: 6108	n:10000
Cons ci ratio: 2.803301e-02	ci left: 6.522301e-01	ci right 6.708757e-01	k: 6616	n:10000
KS ci ratio: 3.942206e-02	ci left: 4.872524e-01	ci right 5.069493e-01	k: 4971	n:10000
ZNF567   10000 perm   2 sec   (5639 perm/sec)   p_kst 4.971000e-01   p_cons 6.616000e-01   p_joint 6.108000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF567.6_1863_10000_0.4971_0.6616_0.6108.png
                gene_name: ZNF567
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.61 
     ci_joint_bounds_left: 0.60 
    ci_joint_bounds_right: 0.62 

Current progress: 35 percent done.
ZNF571
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.360549e-02	ci left: 1.421718e-01	ci right 1.562332e-01	k: 1491	n:10000
Cons ci ratio: 5.688161e-02	ci left: 3.127459e-01	ci right 3.311579e-01	k: 3219	n:10000
KS ci ratio: 1.265054e-01	ci left: 8.203252e-02	ci right 9.320908e-02	k: 875	n:10000
ZNF571   10000 perm   2 sec   (5882 perm/sec)   p_kst 8.750000e-02   p_cons 3.219000e-01   p_joint 1.491000e-01

Joint ci ratio: 6.718554e-02	ci left: 1.405414e-01	ci right 1.503619e-01	k: 2908	n:20000
Cons ci ratio: 3.921617e-02	ci left: 3.265676e-01	ci right 3.396810e-01	k: 6662	n:20000
KS ci ratio: 8.990531e-02	ci left: 8.288439e-02	ci right 9.073622e-02	k: 1735	n:20000
ZNF571   20000 perm   4 sec   (5261 perm/sec)   p_kst 8.675000e-02   p_cons 3.331000e-01   p_joint 1.454000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF571.6_1842_20000_0.08675_0.3331_0.1454.png
                gene_name: ZNF571
               theta_stop: 0.090 
                    nperm: 20000 
                     p_ks: 0.087 
        ci_ks_bounds_left: 0.083 
       ci_ks_bounds_right: 0.091 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.14 
    ci_joint_bounds_right: 0.15 

Current progress: 36 percent done.
ZNF578
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.852255e-02	ci left: 8.097874e-01	ci right 8.250272e-01	k: 8175	n:10000
Cons ci ratio: 2.507590e-02	ci left: 7.005927e-01	ci right 7.184851e-01	k: 7096	n:10000
KS ci ratio: 2.957621e-02	ci left: 6.276875e-01	ci right 6.466326e-01	k: 6372	n:10000
ZNF578   10000 perm   2 sec   (5623 perm/sec)   p_kst 6.372000e-01   p_cons 7.096000e-01   p_joint 8.175000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF578.6_1785_10000_0.6372_0.7096_0.8175.png
                gene_name: ZNF578
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.71 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.72 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 37 percent done.
ZNF596
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.268807e-02	ci left: 2.170439e-01	ci right 2.335164e-01	k: 2252	n:10000
Cons ci ratio: 1.083417e-02	ci left: 9.238935e-01	ci right 9.340549e-01	k: 9291	n:10000
KS ci ratio: 1.209147e-01	ci left: 8.932164e-02	ci right 1.009155e-01	k: 950	n:10000
ZNF596   10000 perm   2 sec   (5684 perm/sec)   p_kst 9.500000e-02   p_cons 9.291000e-01   p_joint 2.252000e-01

Joint ci ratio: 6.127879e-02	ci left: 1.646198e-01	ci right 1.750764e-01	k: 3396	n:20000
Cons ci ratio: 7.897463e-03	ci left: 9.212114e-01	ci right 9.285645e-01	k: 18499	n:20000
KS ci ratio: 8.445036e-02	ci left: 9.312830e-02	ci right 1.013892e-01	k: 1944	n:20000
ZNF596   20000 perm   4 sec   (5109 perm/sec)   p_kst 9.720000e-02   p_cons 9.249500e-01   p_joint 1.698000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF596.6_1535_20000_0.0972_0.92495_0.1698.png
                gene_name: ZNF596
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.097 
        ci_ks_bounds_left: 0.093 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.92 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.18 

Current progress: 38 percent done.
ZNF624
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.716778e-01	ci left: 8.958341e-03	ci right 1.313383e-02	k: 109	n:10000
Cons ci ratio: 6.614075e-01	ci left: 2.355713e-03	ci right 4.747948e-03	k: 34	n:10000
KS ci ratio: 6.253337e-02	ci left: 2.731952e-01	ci right 2.909319e-01	k: 2820	n:10000
ZNF624   10000 perm   2 sec   (5132 perm/sec)   p_kst 2.820000e-01   p_cons 3.400000e-03   p_joint 1.090000e-02

Joint ci ratio: 1.925569e-01	ci left: 1.834288e-02	ci right 2.229831e-02	k: 405	n:20000
Cons ci ratio: 4.099816e-01	ci left: 3.620038e-03	ci right 5.528410e-03	k: 90	n:20000
KS ci ratio: 4.380678e-02	ci left: 2.795947e-01	ci right 2.921676e-01	k: 5717	n:20000
ZNF624   20000 perm   4 sec   (4673 perm/sec)   p_kst 2.858500e-01   p_cons 4.500000e-03   p_joint 2.025000e-02

Joint ci ratio: 9.705946e-02	ci left: 4.905845e-02	ci right 5.409551e-02	k: 1546	n:30000
Cons ci ratio: 3.150656e-01	ci left: 4.325514e-03	ci right 5.972562e-03	k: 153	n:30000
KS ci ratio: 3.562850e-02	ci left: 2.823494e-01	ci right 2.926251e-01	k: 8624	n:30000
ZNF624   30000 perm   7 sec   (4483 perm/sec)   p_kst 2.874667e-01   p_cons 5.100000e-03   p_joint 5.153333e-02

Joint ci ratio: 9.000385e-02	ci left: 4.323366e-02	ci right 4.733268e-02	k: 1810	n:40000
Cons ci ratio: 2.771859e-01	ci left: 4.285871e-03	ci right 5.687477e-03	k: 198	n:40000
KS ci ratio: 3.088914e-02	ci left: 2.825949e-01	ci right 2.914860e-01	k: 11481	n:40000
ZNF624   40000 perm   9 sec   (4356 perm/sec)   p_kst 2.870250e-01   p_cons 4.950000e-03   p_joint 4.525000e-02

Joint ci ratio: 8.274276e-02	ci left: 4.117968e-02	ci right 4.475363e-02	k: 2147	n:50000
Cons ci ratio: 2.472995e-01	ci left: 4.381872e-03	ci right 5.636657e-03	k: 249	n:50000
KS ci ratio: 2.763958e-02	ci left: 2.828980e-01	ci right 2.908468e-01	k: 14343	n:50000
ZNF624   50000 perm   12 sec   (4264 perm/sec)   p_kst 2.868600e-01   p_cons 4.980000e-03   p_joint 4.294000e-02

Joint ci ratio: 8.239760e-02	ci left: 3.485023e-02	ci right 3.786150e-02	k: 2180	n:60000
Cons ci ratio: 2.253757e-01	ci left: 4.451343e-03	ci right 5.597340e-03	k: 300	n:60000
KS ci ratio: 2.521679e-02	ci left: 2.834821e-01	ci right 2.907385e-01	k: 17226	n:60000
ZNF624   60000 perm   14 sec   (4186 perm/sec)   p_kst 2.871000e-01   p_cons 5.000000e-03   p_joint 3.633333e-02

Joint ci ratio: 1.154596e-01	ci left: 1.526386e-02	ci right 1.714798e-02	k: 1133	n:70000
Cons ci ratio: 2.166010e-01	ci left: 4.152744e-03	ci right 5.174697e-03	k: 325	n:70000
KS ci ratio: 2.336347e-02	ci left: 2.834514e-01	ci right 2.901663e-01	k: 20076	n:70000
ZNF624   70000 perm   17 sec   (4115 perm/sec)   p_kst 2.868000e-01   p_cons 4.642857e-03   p_joint 1.618571e-02

Joint ci ratio: 1.131729e-01	ci left: 1.393818e-02	ci right 1.562228e-02	k: 1181	n:80000
Cons ci ratio: 2.058485e-01	ci left: 4.047996e-03	ci right 4.988493e-03	k: 360	n:80000
KS ci ratio: 2.134816e-02	ci left: 2.933239e-01	ci right 2.996659e-01	k: 23719	n:80000
ZNF624   80000 perm   20 sec   (4047 perm/sec)   p_kst 2.964875e-01   p_cons 4.500000e-03   p_joint 1.476250e-02

Joint ci ratio: 9.972605e-02	ci left: 1.603542e-02	ci right 1.772926e-02	k: 1518	n:90000
Cons ci ratio: 1.931525e-01	ci left: 4.115503e-03	ci right 5.005783e-03	k: 409	n:90000
KS ci ratio: 2.011491e-02	ci left: 2.937610e-01	ci right 2.997410e-01	k: 26707	n:90000
ZNF624   90000 perm   23 sec   (3983 perm/sec)   p_kst 2.967444e-01   p_cons 4.544444e-03   p_joint 1.686667e-02

Joint ci ratio: 9.755372e-02	ci left: 1.511425e-02	ci right 1.667401e-02	k: 1588	n:100000
Cons ci ratio: 1.825486e-01	ci left: 4.170935e-03	ci right 5.018195e-03	k: 458	n:100000
KS ci ratio: 1.906330e-02	ci left: 2.943384e-01	ci right 3.000134e-01	k: 29717	n:100000
ZNF624   100000 perm   26 sec   (3920 perm/sec)   p_kst 2.971700e-01   p_cons 4.580000e-03   p_joint 1.588000e-02

Joint ci ratio: 9.554192e-02	ci left: 1.435208e-02	ci right 1.580092e-02	k: 1657	n:110000
Cons ci ratio: 1.756151e-01	ci left: 4.113037e-03	ci right 4.913433e-03	k: 495	n:110000
KS ci ratio: 1.816855e-02	ci left: 2.946451e-01	ci right 3.000565e-01	k: 32708	n:110000
ZNF624   110000 perm   29 sec   (3858 perm/sec)   p_kst 2.973455e-01   p_cons 4.500000e-03   p_joint 1.506364e-02

Joint ci ratio: 8.996446e-02	ci left: 1.487382e-02	ci right 1.628306e-02	k: 1868	n:120000
Cons ci ratio: 1.678416e-01	ci left: 4.145128e-03	ci right 4.912453e-03	k: 542	n:120000
KS ci ratio: 1.785860e-02	ci left: 2.839180e-01	ci right 2.890423e-01	k: 34377	n:120000
ZNF624   120000 perm   32 sec   (3800 perm/sec)   p_kst 2.864750e-01   p_cons 4.516667e-03   p_joint 1.556667e-02

Joint ci ratio: 9.144445e-02	ci left: 1.330067e-02	ci right 1.458269e-02	k: 1811	n:130000
Cons ci ratio: 1.604711e-01	ci left: 4.202478e-03	ci right 4.942965e-03	k: 593	n:130000
KS ci ratio: 1.715019e-02	ci left: 2.842043e-01	ci right 2.891283e-01	k: 37266	n:130000
ZNF624   130000 perm   35 sec   (3746 perm/sec)   p_kst 2.866615e-01   p_cons 4.561538e-03   p_joint 1.393077e-02

Joint ci ratio: 8.824165e-02	ci left: 1.328625e-02	ci right 1.451971e-02	k: 1945	n:140000
Cons ci ratio: 1.545965e-01	ci left: 4.217925e-03	ci right 4.931405e-03	k: 639	n:140000
KS ci ratio: 1.654416e-02	ci left: 2.838547e-01	ci right 2.885971e-01	k: 40071	n:140000
ZNF624   140000 perm   38 sec   (3696 perm/sec)   p_kst 2.862214e-01   p_cons 4.564286e-03   p_joint 1.389286e-02

Joint ci ratio: 8.858338e-02	ci left: 1.231548e-02	ci right 1.346346e-02	k: 1932	n:150000
Cons ci ratio: 1.492140e-01	ci left: 4.238159e-03	ci right 4.927873e-03	k: 686	n:150000
KS ci ratio: 1.598169e-02	ci left: 2.839734e-01	ci right 2.885549e-01	k: 42939	n:150000
ZNF624   150000 perm   41 sec   (3645 perm/sec)   p_kst 2.862600e-01   p_cons 4.573333e-03   p_joint 1.288000e-02

Joint ci ratio: 7.467448e-02	ci left: 1.629860e-02	ci right 1.756899e-02	k: 2708	n:160000
Cons ci ratio: 1.431860e-01	ci left: 4.328553e-03	ci right 5.002090e-03	k: 745	n:160000
KS ci ratio: 1.547484e-02	ci left: 2.840297e-01	ci right 2.884655e-01	k: 45799	n:160000
ZNF624   160000 perm   44 sec   (3597 perm/sec)   p_kst 2.862438e-01   p_cons 4.656250e-03   p_joint 1.692500e-02

Joint ci ratio: 7.268044e-02	ci left: 1.621170e-02	ci right 1.744015e-02	k: 2859	n:170000
Cons ci ratio: 1.389659e-01	ci left: 4.334971e-03	ci right 4.987980e-03	k: 791	n:170000
KS ci ratio: 1.501572e-02	ci left: 2.840169e-01	ci right 2.883198e-01	k: 48648	n:170000
ZNF624   170000 perm   48 sec   (3549 perm/sec)   p_kst 2.861647e-01   p_cons 4.652941e-03   p_joint 1.681765e-02

Joint ci ratio: 7.011910e-02	ci left: 1.646788e-02	ci right 1.766997e-02	k: 3071	n:180000
Cons ci ratio: 1.354233e-01	ci left: 4.319462e-03	ci right 4.952211e-03	k: 833	n:180000
KS ci ratio: 1.458090e-02	ci left: 2.844065e-01	ci right 2.885893e-01	k: 51569	n:180000
ZNF624   180000 perm   51 sec   (3502 perm/sec)   p_kst 2.864944e-01   p_cons 4.627778e-03   p_joint 1.706111e-02

Joint ci ratio: 6.883069e-02	ci left: 1.620616e-02	ci right 1.736654e-02	k: 3188	n:190000
Cons ci ratio: 1.323664e-01	ci left: 4.290505e-03	ci right 4.903708e-03	k: 872	n:190000
KS ci ratio: 1.420169e-02	ci left: 2.841841e-01	ci right 2.882540e-01	k: 54381	n:190000
ZNF624   190000 perm   55 sec   (3455 perm/sec)   p_kst 2.862158e-01   p_cons 4.589474e-03   p_joint 1.677895e-02

Joint ci ratio: 6.912487e-02	ci left: 1.527767e-02	ci right 1.637643e-02	k: 3164	n:200000
Cons ci ratio: 1.287300e-01	ci left: 4.317820e-03	ci right 4.916678e-03	k: 922	n:200000
KS ci ratio: 1.384129e-02	ci left: 2.842597e-01	ci right 2.882265e-01	k: 57248	n:200000
ZNF624   200000 perm   59 sec   (3407 perm/sec)   p_kst 2.862400e-01   p_cons 4.610000e-03   p_joint 1.582000e-02

Joint ci ratio: 6.795148e-02	ci left: 1.506962e-02	ci right 1.613429e-02	k: 3275	n:210000
Cons ci ratio: 1.254424e-01	ci left: 4.338128e-03	ci right 4.923294e-03	k: 971	n:210000
KS ci ratio: 1.351487e-02	ci left: 2.840916e-01	ci right 2.879619e-01	k: 60065	n:210000
ZNF624   210000 perm   62 sec   (3360 perm/sec)   p_kst 2.860238e-01   p_cons 4.623810e-03   p_joint 1.559524e-02

Joint ci ratio: 6.435263e-02	ci left: 1.605231e-02	ci right 1.712411e-02	k: 3648	n:220000
Cons ci ratio: 1.225152e-01	ci left: 4.347952e-03	ci right 4.919765e-03	k: 1018	n:220000
KS ci ratio: 1.320639e-02	ci left: 2.840669e-01	ci right 2.878478e-01	k: 62910	n:220000
ZNF624   220000 perm   66 sec   (3316 perm/sec)   p_kst 2.859545e-01   p_cons 4.627273e-03   p_joint 1.658182e-02

Joint ci ratio: 6.364466e-02	ci left: 1.570939e-02	ci right 1.674633e-02	k: 3731	n:230000
Cons ci ratio: 1.199534e-01	ci left: 4.344413e-03	ci right 4.902966e-03	k: 1062	n:230000
KS ci ratio: 1.291426e-02	ci left: 2.841668e-01	ci right 2.878647e-01	k: 65783	n:230000
ZNF624   230000 perm   70 sec   (3273 perm/sec)   p_kst 2.860130e-01   p_cons 4.617391e-03   p_joint 1.622174e-02

Joint ci ratio: 6.334830e-02	ci left: 1.520643e-02	ci right 1.620532e-02	k: 3768	n:240000
Cons ci ratio: 1.173862e-01	ci left: 4.353417e-03	ci right 4.900319e-03	k: 1109	n:240000
KS ci ratio: 1.264418e-02	ci left: 2.841469e-01	ci right 2.877666e-01	k: 68629	n:240000
ZNF624   240000 perm   74 sec   (3231 perm/sec)   p_kst 2.859542e-01   p_cons 4.620833e-03   p_joint 1.570000e-02

Joint ci ratio: 6.286240e-02	ci left: 1.483429e-02	ci right 1.580099e-02	k: 3828	n:250000
Cons ci ratio: 1.148774e-01	ci left: 4.369589e-03	ci right 4.905994e-03	k: 1158	n:250000
KS ci ratio: 1.238600e-02	ci left: 2.842730e-01	ci right 2.878199e-01	k: 71511	n:250000
ZNF624   250000 perm   78 sec   (3191 perm/sec)   p_kst 2.860440e-01   p_cons 4.632000e-03   p_joint 1.531200e-02

Joint ci ratio: 6.261618e-02	ci left: 1.438479e-02	ci right 1.531838e-02	k: 3860	n:260000
Cons ci ratio: 1.123361e-01	ci left: 4.399586e-03	ci right 4.926934e-03	k: 1211	n:260000
KS ci ratio: 1.214667e-02	ci left: 2.842673e-01	ci right 2.877451e-01	k: 74361	n:260000
ZNF624   260000 perm   82 sec   (3153 perm/sec)   p_kst 2.860038e-01   p_cons 4.657692e-03   p_joint 1.484615e-02

Joint ci ratio: 6.229893e-02	ci left: 1.400141e-02	ci right 1.490535e-02	k: 3901	n:270000
Cons ci ratio: 1.102193e-01	ci left: 4.405868e-03	ci right 4.923371e-03	k: 1258	n:270000
KS ci ratio: 1.136722e-02	ci left: 3.040327e-01	ci right 3.075122e-01	k: 82558	n:270000
ZNF624   270000 perm   87 sec   (3114 perm/sec)   p_kst 3.057704e-01   p_cons 4.659259e-03   p_joint 1.444815e-02

Joint ci ratio: 6.120334e-02	ci left: 1.399715e-02	ci right 1.488437e-02	k: 4042	n:280000
Cons ci ratio: 1.081761e-01	ci left: 4.415263e-03	ci right 4.923644e-03	k: 1306	n:280000
KS ci ratio: 1.115926e-02	ci left: 3.041828e-01	ci right 3.075998e-01	k: 85649	n:280000
ZNF624   280000 perm   91 sec   (3076 perm/sec)   p_kst 3.058893e-01   p_cons 4.664286e-03   p_joint 1.443571e-02

Joint ci ratio: 6.132657e-02	ci left: 1.346684e-02	ci right 1.432222e-02	k: 4028	n:290000
Cons ci ratio: 1.061639e-01	ci left: 4.430807e-03	ci right 4.930895e-03	k: 1356	n:290000
KS ci ratio: 1.096526e-02	ci left: 3.042094e-01	ci right 3.075669e-01	k: 88707	n:290000
ZNF624   290000 perm   96 sec   (3031 perm/sec)   p_kst 3.058862e-01   p_cons 4.675862e-03   p_joint 1.388966e-02

Joint ci ratio: 6.109552e-02	ci left: 1.312291e-02	ci right 1.395319e-02	k: 4060	n:300000
Cons ci ratio: 1.043718e-01	ci left: 4.435656e-03	ci right 4.927321e-03	k: 1403	n:300000
KS ci ratio: 1.077858e-02	ci left: 3.043312e-01	ci right 3.076325e-01	k: 91794	n:300000
ZNF624   300000 perm   100 sec   (2995 perm/sec)   p_kst 3.059800e-01   p_cons 4.676667e-03   p_joint 1.353333e-02

Joint ci ratio: 6.143173e-02	ci left: 1.256607e-02	ci right 1.336565e-02	k: 4018	n:310000
Cons ci ratio: 1.025965e-01	ci left: 4.446545e-03	ci right 4.930528e-03	k: 1452	n:310000
KS ci ratio: 1.059782e-02	ci left: 3.045777e-01	ci right 3.078259e-01	k: 94922	n:310000
ZNF624   310000 perm   105 sec   (2958 perm/sec)   p_kst 3.062000e-01   p_cons 4.683871e-03   p_joint 1.296129e-02

Joint ci ratio: 6.097740e-02	ci left: 1.236105e-02	ci right 1.314156e-02	k: 4079	n:320000
Cons ci ratio: 1.008750e-01	ci left: 4.459866e-03	ci right 4.936672e-03	k: 1502	n:320000
KS ci ratio: 1.043206e-02	ci left: 3.045564e-01	ci right 3.077533e-01	k: 97969	n:320000
ZNF624   320000 perm   109 sec   (2925 perm/sec)   p_kst 3.061531e-01   p_cons 4.693750e-03   p_joint 1.274687e-02

Joint ci ratio: 6.326563e-02	ci left: 1.113603e-02	ci right 1.186653e-02	k: 3794	n:330000
Cons ci ratio: 9.923740e-02	ci left: 4.472443e-03	ci right 4.942380e-03	k: 1552	n:330000
KS ci ratio: 1.026814e-02	ci left: 3.047729e-01	ci right 3.079214e-01	k: 101094	n:330000
ZNF624   330000 perm   114 sec   (2892 perm/sec)   p_kst 3.063455e-01   p_cons 4.703030e-03   p_joint 1.149697e-02

Outputting figure to mutsig2_images.part000000000198/ZNF624.6_2618_330000_0.30635_0.004703_0.011497.png
                gene_name: ZNF624
               theta_stop: 0.099 
                    nperm: 330000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.31 
                   p_cons: 0.0047 
      ci_cons_bounds_left: 0.0045 
     ci_cons_bounds_right: 0.0049 
                  p_joint: 0.011 
     ci_joint_bounds_left: 0.011 
    ci_joint_bounds_right: 0.012 

Current progress: 40 percent done.
ZNF625
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.191661e-02	ci left: 5.916250e-01	ci right 6.109159e-01	k: 6013	n:10000
Cons ci ratio: 4.449503e-02	ci left: 4.271481e-01	ci right 4.466887e-01	k: 4369	n:10000
KS ci ratio: 4.823153e-02	ci left: 3.880884e-01	ci right 4.073712e-01	k: 3977	n:10000
ZNF625   10000 perm   2 sec   (6065 perm/sec)   p_kst 3.977000e-01   p_cons 4.369000e-01   p_joint 6.013000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF625.6_925_10000_0.3977_0.4369_0.6013.png
                gene_name: ZNF625
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.60 
     ci_joint_bounds_left: 0.59 
    ci_joint_bounds_right: 0.61 

Current progress: 41 percent done.
ZNF627
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.924902e-02	ci left: 4.894516e-01	ci right 5.091488e-01	k: 4993	n:10000
Cons ci ratio: 1.223412e-02	ci left: 9.055571e-01	ci right 9.168020e-01	k: 9113	n:10000
KS ci ratio: 5.781958e-02	ci left: 3.057022e-01	ci right 3.240057e-01	k: 3148	n:10000
ZNF627   10000 perm   2 sec   (5757 perm/sec)   p_kst 3.148000e-01   p_cons 9.113000e-01   p_joint 4.993000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF627.6_1402_10000_0.3148_0.9113_0.4993.png
                gene_name: ZNF627
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.91 
      ci_cons_bounds_left: 0.91 
     ci_cons_bounds_right: 0.92 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 42 percent done.
ZNF643
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.187494e-02	ci left: 1.468790e-01	ci right 1.611232e-01	k: 1539	n:10000
Cons ci ratio: 1.771017e-01	ci left: 4.255135e-02	ci right 5.091525e-02	k: 466	n:10000
KS ci ratio: 1.291762e-02	ci left: 8.961077e-01	ci right 9.078569e-01	k: 9021	n:10000
ZNF643   10000 perm   2 sec   (5675 perm/sec)   p_kst 9.021000e-01   p_cons 4.660000e-02   p_joint 1.539000e-01

Joint ci ratio: 6.189432e-02	ci left: 1.618546e-01	ci right 1.722424e-01	k: 3340	n:20000
Cons ci ratio: 1.233734e-01	ci left: 4.507829e-02	ci right 5.105398e-02	k: 960	n:20000
KS ci ratio: 9.101704e-03	ci left: 8.985089e-01	ci right 9.067736e-01	k: 18054	n:20000
ZNF643   20000 perm   4 sec   (5101 perm/sec)   p_kst 9.027000e-01   p_cons 4.800000e-02   p_joint 1.670000e-01

Joint ci ratio: 5.566187e-02	ci left: 1.379036e-01	ci right 1.458325e-01	k: 4255	n:30000
Cons ci ratio: 1.027151e-01	ci left: 4.391700e-02	ci right 4.870469e-02	k: 1388	n:30000
KS ci ratio: 7.383106e-03	ci left: 9.004413e-01	ci right 9.071469e-01	k: 27115	n:30000
ZNF643   30000 perm   6 sec   (4906 perm/sec)   p_kst 9.038333e-01   p_cons 4.626667e-02   p_joint 1.418333e-01

Joint ci ratio: 5.021102e-02	ci left: 1.288950e-01	ci right 1.355585e-01	k: 5288	n:40000
Cons ci ratio: 8.762298e-02	ci left: 4.555832e-02	ci right 4.975766e-02	k: 1905	n:40000
KS ci ratio: 6.356337e-03	ci left: 9.019326e-01	ci right 9.077085e-01	k: 36194	n:40000
ZNF643   40000 perm   8 sec   (4769 perm/sec)   p_kst 9.048500e-01   p_cons 4.762500e-02   p_joint 1.322000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF643.6_1625_40000_0.90485_0.047625_0.1322.png
                gene_name: ZNF643
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.048 
      ci_cons_bounds_left: 0.046 
     ci_cons_bounds_right: 0.050 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.14 

Current progress: 44 percent done.
ZNF644
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.675881e-02	ci left: 8.382657e-01	ci right 8.525325e-01	k: 8455	n:10000
Cons ci ratio: 2.539254e-02	ci left: 6.953478e-01	ci right 7.133330e-01	k: 7044	n:10000
KS ci ratio: 2.516108e-02	ci left: 6.991805e-01	ci right 7.170981e-01	k: 7082	n:10000
ZNF644   10000 perm   2 sec   (4546 perm/sec)   p_kst 7.082000e-01   p_cons 7.044000e-01   p_joint 8.455000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF644.6_4004_10000_0.7082_0.7044_0.8455.png
                gene_name: ZNF644
               theta_stop: 0.025 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.70 
      ci_cons_bounds_left: 0.70 
     ci_cons_bounds_right: 0.71 
                  p_joint: 0.85 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 45 percent done.
ZNF530
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.382108e-02	ci left: 7.214854e-01	ci right 7.389803e-01	k: 7303	n:10000
Cons ci ratio: 4.678286e-02	ci left: 4.027284e-01	ci right 4.221226e-01	k: 4124	n:10000
KS ci ratio: 2.787669e-02	ci left: 6.547462e-01	ci right 6.733581e-01	k: 6641	n:10000
ZNF530   10000 perm   2 sec   (5918 perm/sec)   p_kst 6.641000e-01   p_cons 4.124000e-01   p_joint 7.303000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF530.5_1812_10000_0.6641_0.4124_0.7303.png
                gene_name: ZNF530
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.67 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 46 percent done.
ZNF548
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.203014e-02	ci left: 1.782191e-01	ci right 1.935643e-01	k: 1858	n:10000
Cons ci ratio: 6.560300e-02	ci left: 2.543910e-01	ci right 2.717472e-01	k: 2630	n:10000
KS ci ratio: 8.908765e-02	ci left: 1.549259e-01	ci right 1.694715e-01	k: 1621	n:10000
ZNF548   10000 perm   2 sec   (5509 perm/sec)   p_kst 1.621000e-01   p_cons 2.630000e-01   p_joint 1.858000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF548.5_1654_10000_0.1621_0.263_0.1858.png
                gene_name: ZNF548
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.26 
      ci_cons_bounds_left: 0.25 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 47 percent done.
ZNF555
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.504931e-02	ci left: 2.576556e-01	ci right 2.750807e-01	k: 2663	n:10000
Cons ci ratio: 1.832371e-02	ci left: 8.130385e-01	ci right 8.281743e-01	k: 8207	n:10000
KS ci ratio: 1.197356e-01	ci left: 9.097541e-02	ci right 1.026607e-01	k: 967	n:10000
ZNF555   10000 perm   2 sec   (5404 perm/sec)   p_kst 9.670000e-02   p_cons 8.207000e-01   p_joint 2.663000e-01

Joint ci ratio: 5.573271e-02	ci left: 1.927438e-01	ci right 2.038440e-01	k: 3965	n:20000
Cons ci ratio: 1.285504e-02	ci left: 8.176386e-01	ci right 8.282673e-01	k: 16460	n:20000
KS ci ratio: 8.488614e-02	ci left: 9.224545e-02	ci right 1.004723e-01	k: 1926	n:20000
ZNF555   20000 perm   4 sec   (4865 perm/sec)   p_kst 9.630000e-02   p_cons 8.230000e-01   p_joint 1.982500e-01

Outputting figure to mutsig2_images.part000000000198/ZNF555.5_1903_20000_0.0963_0.823_0.19825.png
                gene_name: ZNF555
               theta_stop: 0.085 
                    nperm: 20000 
                     p_ks: 0.096 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 49 percent done.
ZNF570
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.960612e-01	ci left: 7.782754e-03	ci right 1.171078e-02	k: 96	n:10000
Cons ci ratio: 4.310919e-01	ci left: 6.437624e-03	ci right 1.005764e-02	k: 81	n:10000
KS ci ratio: 1.215513e-01	ci left: 8.844634e-02	ci right 9.999129e-02	k: 941	n:10000
ZNF570   10000 perm   2 sec   (6079 perm/sec)   p_kst 9.410000e-02   p_cons 8.100000e-03   p_joint 9.600000e-03

Joint ci ratio: 1.522032e-01	ci left: 2.965219e-02	ci right 3.458507e-02	k: 641	n:20000
Cons ci ratio: 2.884389e-01	ci left: 7.830711e-03	ci right 1.051490e-02	k: 182	n:20000
KS ci ratio: 8.491052e-02	ci left: 9.219640e-02	ci right 1.004214e-01	k: 1925	n:20000
ZNF570   20000 perm   4 sec   (5425 perm/sec)   p_kst 9.625000e-02   p_cons 9.100000e-03   p_joint 3.205000e-02

Joint ci ratio: 1.255598e-01	ci left: 2.948769e-02	ci right 3.347039e-02	k: 943	n:30000
Cons ci ratio: 2.319143e-01	ci left: 8.339104e-03	ci right 1.055746e-02	k: 282	n:30000
KS ci ratio: 6.926330e-02	ci left: 9.311559e-02	ci right 9.982946e-02	k: 2893	n:30000
ZNF570   30000 perm   6 sec   (5147 perm/sec)   p_kst 9.643333e-02   p_cons 9.400000e-03   p_joint 3.143333e-02

Joint ci ratio: 1.064320e-01	ci left: 3.105165e-02	ci right 3.456660e-02	k: 1311	n:40000
Cons ci ratio: 1.982961e-01	ci left: 8.715205e-03	ci right 1.065697e-02	k: 386	n:40000
KS ci ratio: 6.039773e-02	ci left: 9.239012e-02	ci right 9.816879e-02	k: 3810	n:40000
ZNF570   40000 perm   8 sec   (4982 perm/sec)   p_kst 9.525000e-02   p_cons 9.650000e-03   p_joint 3.277500e-02

Joint ci ratio: 1.085909e-01	ci left: 2.401904e-02	ci right 2.679643e-02	k: 1269	n:50000
Cons ci ratio: 1.744273e-01	ci left: 9.127276e-03	ci right 1.089031e-02	k: 499	n:50000
KS ci ratio: 5.436111e-02	ci left: 9.163347e-02	ci right 9.677375e-02	k: 4709	n:50000
ZNF570   50000 perm   10 sec   (4850 perm/sec)   p_kst 9.418000e-02   p_cons 9.980000e-03   p_joint 2.538000e-02

Joint ci ratio: 1.311695e-01	ci left: 1.370384e-02	ci right 1.564352e-02	k: 879	n:60000
Cons ci ratio: 1.589625e-01	ci left: 9.235305e-03	ci right 1.084595e-02	k: 601	n:60000
KS ci ratio: 4.975606e-02	ci left: 9.141259e-02	ci right 9.609346e-02	k: 5624	n:60000
ZNF570   60000 perm   13 sec   (4735 perm/sec)   p_kst 9.373333e-02   p_cons 1.001667e-02   p_joint 1.465000e-02

Joint ci ratio: 1.287406e-01	ci left: 1.222928e-02	ci right 1.392572e-02	k: 914	n:70000
Cons ci ratio: 1.474184e-01	ci left: 9.262376e-03	ci right 1.075009e-02	k: 699	n:70000
KS ci ratio: 4.610979e-02	ci left: 9.142373e-02	ci right 9.575288e-02	k: 6550	n:70000
ZNF570   70000 perm   15 sec   (4633 perm/sec)   p_kst 9.357143e-02   p_cons 9.985714e-03   p_joint 1.305714e-02

Joint ci ratio: 9.955214e-02	ci left: 1.806517e-02	ci right 1.996994e-02	k: 1520	n:80000
Cons ci ratio: 1.371204e-01	ci left: 9.418678e-03	ci right 1.081719e-02	k: 808	n:80000
KS ci ratio: 4.304260e-02	ci left: 9.191199e-02	ci right 9.596751e-02	k: 7514	n:80000
ZNF570   80000 perm   18 sec   (4538 perm/sec)   p_kst 9.392500e-02   p_cons 1.010000e-02   p_joint 1.900000e-02

Joint ci ratio: 9.746612e-02	ci left: 1.679433e-02	ci right 1.852585e-02	k: 1588	n:90000
Cons ci ratio: 1.288589e-01	ci left: 9.521550e-03	ci right 1.084364e-02	k: 915	n:90000
KS ci ratio: 4.064302e-02	ci left: 9.177068e-02	ci right 9.558889e-02	k: 8430	n:90000
ZNF570   90000 perm   20 sec   (4446 perm/sec)   p_kst 9.366667e-02   p_cons 1.016667e-02   p_joint 1.764444e-02

Joint ci ratio: 8.972415e-02	ci left: 1.788895e-02	ci right 1.957913e-02	k: 1872	n:100000
Cons ci ratio: 1.174321e-01	ci left: 1.037246e-02	ci right 1.167613e-02	k: 1101	n:100000
KS ci ratio: 3.855686e-02	ci left: 9.187091e-02	ci right 9.549270e-02	k: 9367	n:100000
ZNF570   100000 perm   23 sec   (4362 perm/sec)   p_kst 9.367000e-02   p_cons 1.101000e-02   p_joint 1.872000e-02

Joint ci ratio: 8.738854e-02	ci left: 1.717803e-02	ci right 1.875663e-02	k: 1975	n:110000
Cons ci ratio: 1.113282e-01	ci left: 1.052459e-02	ci right 1.177411e-02	k: 1225	n:110000
KS ci ratio: 3.680354e-02	ci left: 9.176771e-02	ci right 9.521740e-02	k: 10283	n:110000
ZNF570   110000 perm   26 sec   (4282 perm/sec)   p_kst 9.348182e-02   p_cons 1.113636e-02   p_joint 1.795455e-02

Joint ci ratio: 7.587592e-02	ci left: 2.093211e-02	ci right 2.259112e-02	k: 2610	n:120000
Cons ci ratio: 1.067281e-01	ci left: 1.052300e-02	ci right 1.171747e-02	k: 1333	n:120000
KS ci ratio: 3.528341e-02	ci left: 9.161872e-02	ci right 9.491764e-02	k: 11191	n:120000
ZNF570   120000 perm   29 sec   (4205 perm/sec)   p_kst 9.325833e-02   p_cons 1.110833e-02   p_joint 2.175000e-02

Joint ci ratio: 7.577809e-02	ci left: 1.940437e-02	ci right 2.094021e-02	k: 2621	n:130000
Cons ci ratio: 1.024396e-01	ci left: 1.056754e-02	ci right 1.171596e-02	k: 1447	n:130000
KS ci ratio: 3.386022e-02	ci left: 9.187685e-02	ci right 9.504900e-02	k: 12149	n:130000
ZNF570   130000 perm   31 sec   (4135 perm/sec)   p_kst 9.345385e-02   p_cons 1.113077e-02   p_joint 2.016154e-02

Joint ci ratio: 8.037313e-02	ci left: 1.603520e-02	ci right 1.738492e-02	k: 2338	n:140000
Cons ci ratio: 9.901504e-02	ci left: 1.052292e-02	ci right 1.162604e-02	k: 1549	n:140000
KS ci ratio: 3.264865e-02	ci left: 9.183094e-02	ci right 9.488592e-02	k: 13069	n:140000
ZNF570   140000 perm   34 sec   (4066 perm/sec)   p_kst 9.335000e-02   p_cons 1.106429e-02   p_joint 1.670000e-02

Outputting figure to mutsig2_images.part000000000198/ZNF570.5_1627_140000_0.09335_0.011064_0.0167.png
                gene_name: ZNF570
               theta_stop: 0.099 
                    nperm: 140000 
                     p_ks: 0.093 
        ci_ks_bounds_left: 0.092 
       ci_ks_bounds_right: 0.095 
                   p_cons: 0.011 
      ci_cons_bounds_left: 0.011 
     ci_cons_bounds_right: 0.012 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.017 

Current progress: 50 percent done.
ZNF577
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.401013e-02	ci left: 4.325336e-01	ci right 4.521000e-01	k: 4423	n:10000
Cons ci ratio: 4.907736e-02	ci left: 3.798263e-01	ci right 3.990382e-01	k: 3894	n:10000
KS ci ratio: 3.874217e-02	ci left: 4.959503e-01	ci right 5.156463e-01	k: 5058	n:10000
ZNF577   10000 perm   2 sec   (5779 perm/sec)   p_kst 5.058000e-01   p_cons 3.894000e-01   p_joint 4.423000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF577.5_1474_10000_0.5058_0.3894_0.4423.png
                gene_name: ZNF577
               theta_stop: 0.049 
                    nperm: 10000 
                     p_ks: 0.51 
        ci_ks_bounds_left: 0.50 
       ci_ks_bounds_right: 0.52 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 51 percent done.
ZNF595
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.541574e-02	ci left: 8.592688e-01	ci right 8.727172e-01	k: 8661	n:10000
KS ci ratio: 1.938620e-02	ci left: 7.955742e-01	ci right 8.112487e-01	k: 8035	n:10000
ZNF595   10000 perm   2 sec   (5591 perm/sec)   p_kst 8.035000e-01   p_cons 8.661000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF595.5_1961_10000_0.8035_0.8661_1.png
                gene_name: ZNF595
               theta_stop: 0.019 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 53 percent done.
ZNF608
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.691241e-02	ci left: 8.358217e-01	ci right 8.501778e-01	k: 8431	n:10000
Cons ci ratio: 4.601925e-02	ci left: 4.106995e-01	ci right 4.301469e-01	k: 4204	n:10000
KS ci ratio: 1.208994e-02	ci left: 9.075108e-01	ci right 9.186472e-01	k: 9132	n:10000
ZNF608   10000 perm   2 sec   (4632 perm/sec)   p_kst 9.132000e-01   p_cons 4.204000e-01   p_joint 8.431000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF608.5_4575_10000_0.9132_0.4204_0.8431.png
                gene_name: ZNF608
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.91 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.42 
      ci_cons_bounds_left: 0.41 
     ci_cons_bounds_right: 0.43 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 54 percent done.
ZNF623
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.594957e-02	ci left: 8.510045e-01	ci right 8.647863e-01	k: 8580	n:10000
KS ci ratio: 1.241471e-02	ci left: 9.030904e-01	ci right 9.144701e-01	k: 9089	n:10000
ZNF623   10000 perm   2 sec   (5989 perm/sec)   p_kst 9.089000e-01   p_cons 8.580000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF623.5_1615_10000_0.9089_0.858_1.png
                gene_name: ZNF623
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.86 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 55 percent done.
ZNF529
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.879503e-02	ci left: 8.053187e-01	ci right 8.206985e-01	k: 8131	n:10000
Cons ci ratio: 2.669171e-02	ci left: 6.739793e-01	ci right 6.923139e-01	k: 6832	n:10000
KS ci ratio: 3.293129e-02	ci left: 5.764730e-01	ci right 5.958768e-01	k: 5862	n:10000
ZNF529   10000 perm   2 sec   (6385 perm/sec)   p_kst 5.862000e-01   p_cons 6.832000e-01   p_joint 8.131000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF529.4_1708_10000_0.5862_0.6832_0.8131.png
                gene_name: ZNF529
               theta_stop: 0.033 
                    nperm: 10000 
                     p_ks: 0.59 
        ci_ks_bounds_left: 0.58 
       ci_ks_bounds_right: 0.60 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.81 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.82 

Current progress: 56 percent done.
ZNF547
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.616784e-02	ci left: 5.302713e-01	ci right 5.499054e-01	k: 5401	n:10000
KS ci ratio: 2.848497e-02	ci left: 6.449852e-01	ci right 6.637248e-01	k: 6544	n:10000
ZNF547   10000 perm   2 sec   (6000 perm/sec)   p_kst 6.544000e-01   p_cons 5.401000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF547.4_1221_10000_0.6544_0.5401_1.png
                gene_name: ZNF547
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.65 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
ZNF556
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.846669e-02	ci left: 8.107017e-01	ci right 8.259124e-01	k: 8184	n:10000
Cons ci ratio: 3.541734e-02	ci left: 5.406868e-01	ci right 5.602838e-01	k: 5505	n:10000
KS ci ratio: 3.618968e-02	ci left: 5.299709e-01	ci right 5.496059e-01	k: 5398	n:10000
ZNF556   10000 perm   2 sec   (5952 perm/sec)   p_kst 5.398000e-01   p_cons 5.505000e-01   p_joint 8.184000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF556.4_1387_10000_0.5398_0.5505_0.8184.png
                gene_name: ZNF556
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.54 
        ci_ks_bounds_left: 0.53 
       ci_ks_bounds_right: 0.55 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 59 percent done.
ZNF563
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.696332e-02	ci left: 6.695471e-01	ci right 6.879487e-01	k: 6788	n:10000
Cons ci ratio: 5.468901e-02	ci left: 3.300180e-01	ci right 3.486756e-01	k: 3393	n:10000
KS ci ratio: 3.208993e-02	ci left: 5.890154e-01	ci right 6.083271e-01	k: 5987	n:10000
ZNF563   10000 perm   2 sec   (6244 perm/sec)   p_kst 5.987000e-01   p_cons 3.393000e-01   p_joint 6.788000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF563.4_1447_10000_0.5987_0.3393_0.6788.png
                gene_name: ZNF563
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 60 percent done.
ZNF57
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.813948e-02	ci left: 6.505193e-01	ci right 6.691875e-01	k: 6599	n:10000
Cons ci ratio: 3.083585e-02	ci left: 6.080924e-01	ci right 6.272390e-01	k: 6177	n:10000
KS ci ratio: 4.625609e-02	ci left: 4.082083e-01	ci right 4.276396e-01	k: 4179	n:10000
ZNF57   10000 perm   2 sec   (5790 perm/sec)   p_kst 4.179000e-01   p_cons 6.177000e-01   p_joint 6.599000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF57.4_1684_10000_0.4179_0.6177_0.6599.png
                gene_name: ZNF57
               theta_stop: 0.046 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.62 
      ci_cons_bounds_left: 0.61 
     ci_cons_bounds_right: 0.63 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 62 percent done.
ZNF582
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.001892e-02	ci left: 3.708706e-01	ci right 3.899991e-01	k: 3804	n:10000
Cons ci ratio: 4.410837e-02	ci left: 4.314365e-01	ci right 4.509978e-01	k: 4412	n:10000
KS ci ratio: 7.162196e-02	ci left: 2.221762e-01	ci right 2.387810e-01	k: 2304	n:10000
ZNF582   10000 perm   2 sec   (6550 perm/sec)   p_kst 2.304000e-01   p_cons 4.412000e-01   p_joint 3.804000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF582.4_1570_10000_0.2304_0.4412_0.3804.png
                gene_name: ZNF582
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 63 percent done.
ZNF586
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.297280e-02	ci left: 4.443061e-01	ci right 4.639206e-01	k: 4541	n:10000
Cons ci ratio: 8.655262e-02	ci left: 1.627829e-01	ci right 1.776098e-01	k: 1701	n:10000
KS ci ratio: 3.199653e-02	ci left: 5.904206e-01	ci right 6.097211e-01	k: 6001	n:10000
ZNF586   10000 perm   2 sec   (5983 perm/sec)   p_kst 6.001000e-01   p_cons 1.701000e-01   p_joint 4.541000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF586.4_1221_10000_0.6001_0.1701_0.4541.png
                gene_name: ZNF586
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 64 percent done.
ZNF593
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.075295e-01	ci left: 1.109577e-01	ci right 1.236661e-01	k: 1172	n:10000
Cons ci ratio: 4.945085e-02	ci left: 3.762436e-01	ci right 3.954229e-01	k: 3858	n:10000
KS ci ratio: 1.523350e-01	ci left: 5.735153e-02	ci right 6.690551e-02	k: 620	n:10000
ZNF593   10000 perm   2 sec   (6220 perm/sec)   p_kst 6.200000e-02   p_cons 3.858000e-01   p_joint 1.172000e-01

Joint ci ratio: 1.120129e-01	ci left: 5.445922e-02	ci right 6.097011e-02	k: 1153	n:20000
Cons ci ratio: 3.660005e-02	ci left: 3.577751e-01	ci right 3.711643e-01	k: 7289	n:20000
KS ci ratio: 1.033518e-01	ci left: 6.362186e-02	ci right 7.060464e-02	k: 1341	n:20000
ZNF593   20000 perm   4 sec   (5557 perm/sec)   p_kst 6.705000e-02   p_cons 3.644500e-01   p_joint 5.765000e-02

Joint ci ratio: 7.412713e-02	ci left: 8.209723e-02	ci right 8.845003e-02	k: 2557	n:30000
Cons ci ratio: 2.999158e-02	ci left: 3.573561e-01	ci right 3.682705e-01	k: 10884	n:30000
KS ci ratio: 8.354483e-02	ci left: 6.550338e-02	ci right 7.124721e-02	k: 2050	n:30000
ZNF593   30000 perm   6 sec   (5304 perm/sec)   p_kst 6.833333e-02   p_cons 3.628000e-01   p_joint 8.523333e-02

Outputting figure to mutsig2_images.part000000000198/ZNF593.4_417_30000_0.068333_0.3628_0.085233.png
                gene_name: ZNF593
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.068 
        ci_ks_bounds_left: 0.066 
       ci_ks_bounds_right: 0.071 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.37 
                  p_joint: 0.085 
     ci_joint_bounds_left: 0.082 
    ci_joint_bounds_right: 0.088 

Current progress: 65 percent done.
ZNF605
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.679039e-02	ci left: 6.723675e-01	ci right 6.907266e-01	k: 6816	n:10000
Cons ci ratio: 1.040927e-02	ci left: 9.291629e-01	ci right 9.389824e-01	k: 9342	n:10000
KS ci ratio: 3.371106e-02	ci left: 5.650398e-01	ci right 5.845166e-01	k: 5748	n:10000
ZNF605   10000 perm   2 sec   (6026 perm/sec)   p_kst 5.748000e-01   p_cons 9.342000e-01   p_joint 6.816000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF605.4_2035_10000_0.5748_0.9342_0.6816.png
                gene_name: ZNF605
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 67 percent done.
ZNF606
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.405748e-02	ci left: 8.797106e-01	ci right 8.922635e-01	k: 8861	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ZNF606   10000 perm   2 sec   (5806 perm/sec)   p_kst 1   p_cons 8.861000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF606.4_2403_10000_1_0.8861_1.png
                gene_name: ZNF606
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
ZNF614
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.617279e-02	ci left: 3.182039e-01	ci right 3.366967e-01	k: 3274	n:10000
Cons ci ratio: 7.122053e-02	ci left: 2.241507e-01	ci right 2.408054e-01	k: 2324	n:10000
KS ci ratio: 5.060749e-02	ci left: 3.653994e-01	ci right 3.844735e-01	k: 3749	n:10000
ZNF614   10000 perm   2 sec   (5794 perm/sec)   p_kst 3.749000e-01   p_cons 2.324000e-01   p_joint 3.274000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF614.4_1774_10000_0.3749_0.2324_0.3274.png
                gene_name: ZNF614
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.37 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.38 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.34 

Current progress: 69 percent done.
ZNF618
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.930804e-02	ci left: 1.280657e-01	ci right 1.415478e-01	k: 1347	n:10000
Cons ci ratio: 1.323001e-01	ci left: 7.533730e-02	ci right 8.610844e-02	k: 806	n:10000
KS ci ratio: 6.387201e-02	ci left: 2.647803e-01	ci right 2.823518e-01	k: 2735	n:10000
ZNF618   10000 perm   2 sec   (5742 perm/sec)   p_kst 2.735000e-01   p_cons 8.060000e-02   p_joint 1.347000e-01

Joint ci ratio: 6.080502e-02	ci left: 1.667928e-01	ci right 1.773027e-01	k: 3440	n:20000
Cons ci ratio: 9.451095e-02	ci left: 7.544481e-02	ci right 8.297806e-02	k: 1583	n:20000
KS ci ratio: 4.499479e-02	ci left: 2.688694e-01	ci right 2.812960e-01	k: 5501	n:20000
ZNF618   20000 perm   4 sec   (5146 perm/sec)   p_kst 2.750500e-01   p_cons 7.915000e-02   p_joint 1.720000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF618.4_2642_20000_0.27505_0.07915_0.172.png
                gene_name: ZNF618
               theta_stop: 0.095 
                    nperm: 20000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.079 
      ci_cons_bounds_left: 0.075 
     ci_cons_bounds_right: 0.083 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 71 percent done.
ZNF620
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.452217e-02	ci left: 4.268489e-01	ci right 4.463880e-01	k: 4366	n:10000
Cons ci ratio: 9.121080e-02	ci left: 1.487429e-01	ci right 1.630582e-01	k: 1558	n:10000
KS ci ratio: 2.698187e-02	ci left: 6.692450e-01	ci right 6.876510e-01	k: 6785	n:10000
ZNF620   10000 perm   2 sec   (6007 perm/sec)   p_kst 6.785000e-01   p_cons 1.558000e-01   p_joint 4.366000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF620.4_1285_10000_0.6785_0.1558_0.4366.png
                gene_name: ZNF620
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.69 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 72 percent done.
ZNF621
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.287501e-02	ci left: 1.441328e-01	ci right 1.582710e-01	k: 1511	n:10000
Cons ci ratio: 2.506374e-02	ci left: 7.007944e-01	ci right 7.186833e-01	k: 7098	n:10000
KS ci ratio: 1.763111e-01	ci left: 4.293441e-02	ci right 5.133194e-02	k: 470	n:10000
ZNF621   10000 perm   2 sec   (5886 perm/sec)   p_kst 4.700000e-02   p_cons 7.098000e-01   p_joint 1.511000e-01

Joint ci ratio: 7.137438e-02	ci left: 1.263528e-01	ci right 1.357547e-01	k: 2620	n:20000
Cons ci ratio: 1.844632e-02	ci left: 6.866051e-01	ci right 6.994387e-01	k: 13861	n:20000
KS ci ratio: 1.248824e-01	ci left: 4.401091e-02	ci right 4.992170e-02	k: 938	n:20000
ZNF621   20000 perm   4 sec   (5328 perm/sec)   p_kst 4.690000e-02   p_cons 6.930500e-01   p_joint 1.310000e-01

Joint ci ratio: 6.707863e-02	ci left: 9.876144e-02	ci right 1.056492e-01	k: 3065	n:30000
Cons ci ratio: 1.504322e-02	ci left: 6.883147e-01	ci right 6.987811e-01	k: 20807	n:30000
KS ci ratio: 1.007164e-01	ci left: 4.564079e-02	ci right 5.051388e-02	k: 1441	n:30000
ZNF621   30000 perm   6 sec   (5112 perm/sec)   p_kst 4.803333e-02   p_cons 6.935667e-01   p_joint 1.021667e-01

Joint ci ratio: 5.811574e-02	ci left: 9.914927e-02	ci right 1.051086e-01	k: 4084	n:40000
Cons ci ratio: 1.304754e-02	ci left: 6.883781e-01	ci right 6.974438e-01	k: 27717	n:40000
KS ci ratio: 8.793834e-02	ci left: 4.524012e-02	ci right 4.942591e-02	k: 1892	n:40000
ZNF621   40000 perm   8 sec   (4958 perm/sec)   p_kst 4.730000e-02   p_cons 6.929250e-01   p_joint 1.021000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF621.4_1336_40000_0.0473_0.69293_0.1021.png
                gene_name: ZNF621
               theta_stop: 0.088 
                    nperm: 40000 
                     p_ks: 0.047 
        ci_ks_bounds_left: 0.045 
       ci_ks_bounds_right: 0.049 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.11 

Current progress: 73 percent done.
ZNF626
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.983582e-02	ci left: 2.912258e-01	ci right 3.092906e-01	k: 3002	n:10000
Cons ci ratio: 1.071047e-02	ci left: 9.254425e-01	ci right 9.355050e-01	k: 9306	n:10000
KS ci ratio: 9.723386e-02	ci left: 1.329609e-01	ci right 1.466496e-01	k: 1397	n:10000
ZNF626   10000 perm   2 sec   (5928 perm/sec)   p_kst 1.397000e-01   p_cons 9.306000e-01   p_joint 3.002000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF626.4_1660_10000_0.1397_0.9306_0.3002.png
                gene_name: ZNF626
               theta_stop: 0.097 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.30 
     ci_joint_bounds_left: 0.29 
    ci_joint_bounds_right: 0.31 

Current progress: 74 percent done.
ZNF532
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.740328e-02	ci left: 6.623971e-01	ci right 6.809028e-01	k: 6717	n:10000
KS ci ratio: 2.101274e-02	ci left: 7.685089e-01	ci right 7.849296e-01	k: 7768	n:10000
ZNF532   10000 perm   2 sec   (5278 perm/sec)   p_kst 7.768000e-01   p_cons 6.717000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF532.3_3938_10000_0.7768_0.6717_1.png
                gene_name: ZNF532
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.67 
      ci_cons_bounds_left: 0.66 
     ci_cons_bounds_right: 0.68 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 76 percent done.
ZNF534
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.358403e-02	ci left: 2.665620e-01	ci right 2.841691e-01	k: 2753	n:10000
Cons ci ratio: 4.539235e-02	ci left: 4.173773e-01	ci right 4.368652e-01	k: 4271	n:10000
KS ci ratio: 7.747908e-02	ci left: 1.958434e-01	ci right 2.117295e-01	k: 2037	n:10000
ZNF534   10000 perm   2 sec   (5808 perm/sec)   p_kst 2.037000e-01   p_cons 4.271000e-01   p_joint 2.753000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF534.3_2039_10000_0.2037_0.4271_0.2753.png
                gene_name: ZNF534
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.20 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.28 

Current progress: 77 percent done.
ZNF552
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.466463e-02	ci left: 3.302166e-01	ci right 3.488769e-01	k: 3395	n:10000
Cons ci ratio: 3.733377e-02	ci left: 5.144559e-01	ci right 5.341300e-01	k: 5243	n:10000
KS ci ratio: 1.097680e-01	ci left: 1.068582e-01	ci right 1.193681e-01	k: 1130	n:10000
ZNF552   10000 perm   2 sec   (6253 perm/sec)   p_kst 1.130000e-01   p_cons 5.243000e-01   p_joint 3.395000e-01

Joint ci ratio: 3.789482e-02	ci left: 3.418936e-01	ci right 3.551504e-01	k: 6970	n:20000
Cons ci ratio: 2.751218e-02	ci left: 4.967456e-01	ci right 5.106534e-01	k: 10074	n:20000
KS ci ratio: 7.793027e-02	ci left: 1.079067e-01	ci right 1.167064e-01	k: 2245	n:20000
ZNF552   20000 perm   4 sec   (5577 perm/sec)   p_kst 1.122500e-01   p_cons 5.037000e-01   p_joint 3.485000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF552.3_1236_20000_0.11225_0.5037_0.3485.png
                gene_name: ZNF552
               theta_stop: 0.078 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.12 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 78 percent done.
ZNF554
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.318812e-02	ci left: 2.690368e-01	ci right 2.866928e-01	k: 2778	n:10000
Cons ci ratio: 6.041024e-02	ci left: 2.872616e-01	ci right 3.052572e-01	k: 2962	n:10000
KS ci ratio: 5.490924e-02	ci left: 3.282306e-01	ci right 3.468641e-01	k: 3375	n:10000
ZNF554   10000 perm   2 sec   (6554 perm/sec)   p_kst 3.375000e-01   p_cons 2.962000e-01   p_joint 2.778000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF554.3_1637_10000_0.3375_0.2962_0.2778.png
                gene_name: ZNF554
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 79 percent done.
ZNF561
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.111895e-02	ci left: 9.202817e-01	ci right 9.306688e-01	k: 9256	n:10000
KS ci ratio: 2.027211e-02	ci left: 7.808694e-01	ci right 7.969620e-01	k: 7890	n:10000
ZNF561   10000 perm   2 sec   (6646 perm/sec)   p_kst 7.890000e-01   p_cons 9.256000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF561.3_1481_10000_0.789_0.9256_1.png
                gene_name: ZNF561
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 81 percent done.
ZNF565
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.661901e-01	ci left: 4.830553e-02	ci right 5.715732e-02	k: 526	n:10000
Cons ci ratio: 4.420964e-01	ci left: 6.081359e-03	ci right 9.614411e-03	k: 77	n:10000
KS ci ratio: 4.727859e-02	ci left: 3.976482e-01	ci right 4.170058e-01	k: 4073	n:10000
ZNF565   10000 perm   2 sec   (6217 perm/sec)   p_kst 4.073000e-01   p_cons 7.700000e-03   p_joint 5.260000e-02

Joint ci ratio: 1.568044e-01	ci left: 2.791979e-02	ci right 3.271805e-02	k: 605	n:20000
Cons ci ratio: 3.254805e-01	ci left: 6.029406e-03	ci right 8.417230e-03	k: 143	n:20000
KS ci ratio: 3.372322e-02	ci left: 3.963412e-01	ci right 4.099870e-01	k: 8063	n:20000
ZNF565   20000 perm   4 sec   (5563 perm/sec)   p_kst 4.031500e-01   p_cons 7.150000e-03   p_joint 3.025000e-02

Joint ci ratio: 1.788124e-01	ci left: 1.435554e-02	ci right 1.720602e-02	k: 472	n:30000
Cons ci ratio: 2.558043e-01	ci left: 6.773317e-03	ci right 8.790429e-03	k: 232	n:30000
KS ci ratio: 2.751766e-02	ci left: 3.979081e-01	ci right 4.090439e-01	k: 12104	n:30000
ZNF565   30000 perm   6 sec   (5314 perm/sec)   p_kst 4.034667e-01   p_cons 7.733333e-03   p_joint 1.573333e-02

Joint ci ratio: 1.471795e-01	ci left: 1.614124e-02	ci right 1.872950e-02	k: 696	n:40000
Cons ci ratio: 2.258478e-01	ci left: 6.630713e-03	ci right 8.341955e-03	k: 298	n:40000
KS ci ratio: 2.388425e-02	ci left: 3.975891e-01	ci right 4.072251e-01	k: 16096	n:40000
ZNF565   40000 perm   8 sec   (5140 perm/sec)   p_kst 4.024000e-01   p_cons 7.450000e-03   p_joint 1.740000e-02

Joint ci ratio: 1.457533e-01	ci left: 1.321978e-02	ci right 1.531717e-02	k: 712	n:50000
Cons ci ratio: 1.997951e-01	ci left: 6.876477e-03	ci right 8.421510e-03	k: 381	n:50000
KS ci ratio: 2.136027e-02	ci left: 3.981574e-01	ci right 4.067740e-01	k: 20123	n:50000
ZNF565   50000 perm   10 sec   (5008 perm/sec)   p_kst 4.024600e-01   p_cons 7.620000e-03   p_joint 1.424000e-02

Joint ci ratio: 1.381028e-01	ci left: 1.233425e-02	ci right 1.417994e-02	k: 794	n:60000
Cons ci ratio: 1.824676e-01	ci left: 6.936577e-03	ci right 8.345009e-03	k: 457	n:60000
KS ci ratio: 1.948079e-02	ci left: 3.989885e-01	ci right 4.068542e-01	k: 24175	n:60000
ZNF565   60000 perm   12 sec   (4889 perm/sec)   p_kst 4.029167e-01   p_cons 7.616667e-03   p_joint 1.323333e-02

Joint ci ratio: 1.046316e-01	ci left: 1.862766e-02	ci right 2.069814e-02	k: 1375	n:70000
Cons ci ratio: 1.688263e-01	ci left: 6.997352e-03	ci right 8.301101e-03	k: 534	n:70000
KS ci ratio: 1.803213e-02	ci left: 3.993776e-01	ci right 4.066590e-01	k: 28211	n:70000
ZNF565   70000 perm   15 sec   (4787 perm/sec)   p_kst 4.030143e-01   p_cons 7.628571e-03   p_joint 1.964286e-02

Joint ci ratio: 1.116954e-01	ci left: 1.431493e-02	ci right 1.602049e-02	k: 1212	n:80000
Cons ci ratio: 1.583708e-01	ci left: 6.997851e-03	ci right 8.213267e-03	k: 607	n:80000
KS ci ratio: 1.690625e-02	ci left: 3.985124e-01	ci right 4.053197e-01	k: 32153	n:80000
ZNF565   80000 perm   17 sec   (4678 perm/sec)   p_kst 4.019125e-01   p_cons 7.587500e-03   p_joint 1.515000e-02

Joint ci ratio: 1.092184e-01	ci left: 1.333985e-02	ci right 1.489170e-02	k: 1269	n:90000
Cons ci ratio: 1.477969e-01	ci left: 7.182091e-03	ci right 8.338864e-03	k: 697	n:90000
KS ci ratio: 1.596269e-02	ci left: 3.980066e-01	ci right 4.044220e-01	k: 36109	n:90000
ZNF565   90000 perm   20 sec   (4576 perm/sec)   p_kst 4.012111e-01   p_cons 7.744444e-03   p_joint 1.410000e-02

Joint ci ratio: 1.009308e-01	ci left: 1.410944e-02	ci right 1.561889e-02	k: 1485	n:100000
Cons ci ratio: 1.409059e-01	ci left: 7.138596e-03	ci right 8.230250e-03	k: 767	n:100000
KS ci ratio: 1.512974e-02	ci left: 3.986095e-01	ci right 4.046962e-01	k: 40165	n:100000
ZNF565   100000 perm   22 sec   (4461 perm/sec)   p_kst 4.016500e-01   p_cons 7.670000e-03   p_joint 1.485000e-02

Joint ci ratio: 1.008625e-01	ci left: 1.286179e-02	ci right 1.423676e-02	k: 1489	n:110000
Cons ci ratio: 1.360466e-01	ci left: 6.981050e-03	ci right 8.008810e-03	k: 823	n:110000
KS ci ratio: 1.442990e-02	ci left: 3.986103e-01	ci right 4.044131e-01	k: 44166	n:110000
ZNF565   110000 perm   25 sec   (4380 perm/sec)   p_kst 4.015091e-01   p_cons 7.481818e-03   p_joint 1.353636e-02

Joint ci ratio: 8.743266e-02	ci left: 1.575417e-02	ci right 1.720267e-02	k: 1976	n:120000
Cons ci ratio: 1.298847e-01	ci left: 7.043807e-03	ci right 8.030216e-03	k: 903	n:120000
KS ci ratio: 1.381274e-02	ci left: 3.988329e-01	ci right 4.043885e-01	k: 48193	n:120000
ZNF565   120000 perm   28 sec   (4306 perm/sec)   p_kst 4.016083e-01   p_cons 7.525000e-03   p_joint 1.646667e-02

Joint ci ratio: 8.499147e-02	ci left: 1.541526e-02	ci right 1.679106e-02	k: 2092	n:130000
Cons ci ratio: 1.252627e-01	ci left: 7.008354e-03	ci right 7.952277e-03	k: 971	n:130000
KS ci ratio: 1.324904e-02	ci left: 3.997327e-01	ci right 4.050717e-01	k: 52312	n:130000
ZNF565   130000 perm   31 sec   (4234 perm/sec)   p_kst 4.024000e-01   p_cons 7.469231e-03   p_joint 1.609231e-02

Joint ci ratio: 8.624115e-02	ci left: 1.391528e-02	ci right 1.517638e-02	k: 2035	n:140000
Cons ci ratio: 1.207509e-01	ci left: 7.020069e-03	ci right 7.929080e-03	k: 1045	n:140000
KS ci ratio: 1.275706e-02	ci left: 4.002079e-01	ci right 4.053533e-01	k: 56389	n:140000
ZNF565   140000 perm   34 sec   (4168 perm/sec)   p_kst 4.027786e-01   p_cons 7.464286e-03   p_joint 1.453571e-02

Joint ci ratio: 7.820623e-02	ci left: 1.582867e-02	ci right 1.712345e-02	k: 2470	n:150000
Cons ci ratio: 1.159144e-01	ci left: 7.127862e-03	ci right 8.011333e-03	k: 1134	n:150000
KS ci ratio: 1.234036e-02	ci left: 3.996772e-01	ci right 4.046466e-01	k: 60324	n:150000
ZNF565   150000 perm   37 sec   (4100 perm/sec)   p_kst 4.021600e-01   p_cons 7.560000e-03   p_joint 1.646667e-02

Joint ci ratio: 8.037134e-02	ci left: 1.406084e-02	ci right 1.524434e-02	k: 2343	n:160000
Cons ci ratio: 1.124053e-01	ci left: 7.119520e-03	ci right 7.973470e-03	k: 1206	n:160000
KS ci ratio: 1.194675e-02	ci left: 3.998273e-01	ci right 4.046388e-01	k: 64357	n:160000
ZNF565   160000 perm   40 sec   (4040 perm/sec)   p_kst 4.022312e-01   p_cons 7.537500e-03   p_joint 1.464375e-02

Joint ci ratio: 8.700451e-02	ci left: 1.128632e-02	ci right 1.231866e-02	k: 2005	n:170000
Cons ci ratio: 1.091108e-01	ci left: 7.123961e-03	ci right 7.951790e-03	k: 1280	n:170000
KS ci ratio: 1.159010e-02	ci left: 3.998972e-01	ci right 4.045649e-01	k: 68379	n:170000
ZNF565   170000 perm   43 sec   (3981 perm/sec)   p_kst 4.022294e-01   p_cons 7.529412e-03   p_joint 1.179412e-02

Joint ci ratio: 8.463388e-02	ci left: 1.127904e-02	ci right 1.228122e-02	k: 2119	n:180000
Cons ci ratio: 1.060112e-01	ci left: 7.139052e-03	ci right 7.943597e-03	k: 1356	n:180000
KS ci ratio: 1.126906e-02	ci left: 3.997282e-01	ci right 4.042638e-01	k: 72359	n:180000
ZNF565   180000 perm   46 sec   (3922 perm/sec)   p_kst 4.019944e-01   p_cons 7.533333e-03   p_joint 1.177222e-02

Joint ci ratio: 8.214987e-02	ci left: 1.135537e-02	ci right 1.233329e-02	k: 2249	n:190000
Cons ci ratio: 1.031616e-01	ci left: 7.152852e-03	ci right 7.935970e-03	k: 1432	n:190000
KS ci ratio: 1.095866e-02	ci left: 4.002202e-01	ci right 4.046354e-01	k: 76461	n:190000
ZNF565   190000 perm   49 sec   (3866 perm/sec)   p_kst 4.024263e-01   p_cons 7.536842e-03   p_joint 1.183684e-02

Joint ci ratio: 6.793509e-02	ci left: 1.581839e-02	ci right 1.693569e-02	k: 3274	n:200000
Cons ci ratio: 1.005972e-01	ci left: 7.155782e-03	ci right 7.918596e-03	k: 1506	n:200000
KS ci ratio: 1.068022e-02	ci left: 4.003197e-01	ci right 4.046231e-01	k: 80494	n:200000
ZNF565   200000 perm   53 sec   (3808 perm/sec)   p_kst 4.024700e-01   p_cons 7.530000e-03   p_joint 1.637000e-02

Joint ci ratio: 7.604536e-02	ci left: 1.201983e-02	ci right 1.297465e-02	k: 2623	n:210000
Cons ci ratio: 9.824638e-02	ci left: 7.154006e-03	ci right 7.897780e-03	k: 1579	n:210000
KS ci ratio: 1.042847e-02	ci left: 4.001113e-01	ci right 4.043104e-01	k: 84464	n:210000
ZNF565   210000 perm   56 sec   (3752 perm/sec)   p_kst 4.022095e-01   p_cons 7.519048e-03   p_joint 1.249048e-02

Outputting figure to mutsig2_images.part000000000198/ZNF565.3_1516_210000_0.40221_0.007519_0.01249.png
                gene_name: ZNF565
               theta_stop: 0.098 
                    nperm: 210000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.40 
                   p_cons: 0.0075 
      ci_cons_bounds_left: 0.0072 
     ci_cons_bounds_right: 0.0079 
                  p_joint: 0.012 
     ci_joint_bounds_left: 0.012 
    ci_joint_bounds_right: 0.013 

Current progress: 82 percent done.
ZNF572
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.843563e-02	ci left: 8.112097e-01	ci right 8.264042e-01	k: 8189	n:10000
KS ci ratio: 1.603451e-02	ci left: 8.496789e-01	ci right 8.635127e-01	k: 8567	n:10000
ZNF572   10000 perm   2 sec   (6591 perm/sec)   p_kst 8.567000e-01   p_cons 8.189000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF572.3_1598_10000_0.8567_0.8189_1.png
                gene_name: ZNF572
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.86 
        ci_ks_bounds_left: 0.85 
       ci_ks_bounds_right: 0.86 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
ZNF574
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.731953e-02	ci left: 8.293074e-01	ci right 8.438960e-01	k: 8367	n:10000
Cons ci ratio: 5.842809e-02	ci left: 3.012392e-01	ci right 3.194714e-01	k: 3103	n:10000
KS ci ratio: 1.458116e-02	ci left: 8.719362e-01	ci right 8.848425e-01	k: 8785	n:10000
ZNF574   10000 perm   2 sec   (6070 perm/sec)   p_kst 8.785000e-01   p_cons 3.103000e-01   p_joint 8.367000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF574.3_2695_10000_0.8785_0.3103_0.8367.png
                gene_name: ZNF574
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.88 
        ci_ks_bounds_left: 0.87 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.31 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.32 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 85 percent done.
ZNF594
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.912365e-02	ci left: 4.910511e-01	ci right 5.107483e-01	k: 5009	n:10000
Cons ci ratio: 1.779247e-02	ci left: 8.216784e-01	ci right 8.365294e-01	k: 8292	n:10000
KS ci ratio: 6.285915e-02	ci left: 2.711159e-01	ci right 2.888125e-01	k: 2799	n:10000
ZNF594   10000 perm   2 sec   (6230 perm/sec)   p_kst 2.799000e-01   p_cons 8.292000e-01   p_joint 5.009000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF594.3_2428_10000_0.2799_0.8292_0.5009.png
                gene_name: ZNF594
               theta_stop: 0.063 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.84 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 86 percent done.
ZNF622
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.208266e-02	ci left: 7.505939e-01	ci right 7.674550e-01	k: 7591	n:10000
Cons ci ratio: 9.563197e-03	ci left: 9.392090e-01	ci right 9.483304e-01	k: 9439	n:10000
KS ci ratio: 4.232008e-02	ci left: 4.518913e-01	ci right 4.715310e-01	k: 4617	n:10000
ZNF622   10000 perm   2 sec   (6045 perm/sec)   p_kst 4.617000e-01   p_cons 9.439000e-01   p_joint 7.591000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF622.3_1458_10000_0.4617_0.9439_0.7591.png
                gene_name: ZNF622
               theta_stop: 0.042 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 87 percent done.
ZNF628
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.036185e-02	ci left: 1.844192e-01	ci right 1.999605e-01	k: 1921	n:10000
Cons ci ratio: 1.827128e-01	ci left: 3.996794e-02	ci right 4.810038e-02	k: 439	n:10000
KS ci ratio: 9.635105e-03	ci left: 9.383791e-01	ci right 9.475607e-01	k: 9431	n:10000
ZNF628   10000 perm   2 sec   (5357 perm/sec)   p_kst 9.431000e-01   p_cons 4.390000e-02   p_joint 1.921000e-01

Joint ci ratio: 6.353391e-02	ci left: 1.547958e-01	ci right 1.650033e-01	k: 3197	n:20000
Cons ci ratio: 1.311613e-01	ci left: 3.993964e-02	ci right 4.559426e-02	k: 854	n:20000
KS ci ratio: 6.930415e-03	ci left: 9.378500e-01	ci right 9.444210e-01	k: 18824	n:20000
ZNF628   20000 perm   4 sec   (4839 perm/sec)   p_kst 9.412000e-01   p_cons 4.270000e-02   p_joint 1.598500e-01

Joint ci ratio: 5.649997e-02	ci left: 1.343462e-01	ci right 1.421906e-01	k: 4147	n:30000
Cons ci ratio: 1.069847e-01	ci left: 4.053731e-02	ci right 4.515175e-02	k: 1284	n:30000
KS ci ratio: 5.702198e-03	ci left: 9.375934e-01	ci right 9.429876e-01	k: 28210	n:30000
ZNF628   30000 perm   6 sec   (4637 perm/sec)   p_kst 9.403333e-01   p_cons 4.280000e-02   p_joint 1.382333e-01

Joint ci ratio: 5.059200e-02	ci left: 1.271886e-01	ci right 1.338152e-01	k: 5219	n:40000
Cons ci ratio: 9.237989e-02	ci left: 4.108167e-02	ci right 4.508501e-02	k: 1722	n:40000
KS ci ratio: 4.975634e-03	ci left: 9.370936e-01	ci right 9.417924e-01	k: 37579	n:40000
ZNF628   40000 perm   9 sec   (4500 perm/sec)   p_kst 9.394750e-01   p_cons 4.305000e-02   p_joint 1.304750e-01

Outputting figure to mutsig2_images.part000000000198/ZNF628.3_3172_40000_0.93947_0.04305_0.13048.png
                gene_name: ZNF628
               theta_stop: 0.092 
                    nperm: 40000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.043 
      ci_cons_bounds_left: 0.041 
     ci_cons_bounds_right: 0.045 
                  p_joint: 0.13 
     ci_joint_bounds_left: 0.13 
    ci_joint_bounds_right: 0.13 

Current progress: 88 percent done.
ZNF629
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.983895e-02	ci left: 6.235661e-01	ci right 6.425563e-01	k: 6331	n:10000
KS ci ratio: 1.673957e-02	ci left: 8.385712e-01	ci right 8.528268e-01	k: 8458	n:10000
ZNF629   10000 perm   2 sec   (5752 perm/sec)   p_kst 8.458000e-01   p_cons 6.331000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF629.3_2618_10000_0.8458_0.6331_1.png
                gene_name: ZNF629
               theta_stop: 0.030 
                    nperm: 10000 
                     p_ks: 0.85 
        ci_ks_bounds_left: 0.84 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.63 
      ci_cons_bounds_left: 0.62 
     ci_cons_bounds_right: 0.64 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 90 percent done.
ZNF630
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.202867e-01	ci left: 9.019709e-02	ci right 1.018395e-01	k: 959	n:10000
Cons ci ratio: 2.198857e-01	ci left: 2.740624e-02	ci right 3.427066e-02	k: 307	n:10000
KS ci ratio: 3.430777e-02	ci left: 5.564183e-01	ci right 5.759431e-01	k: 5662	n:10000
ZNF630   10000 perm   2 sec   (6411 perm/sec)   p_kst 5.662000e-01   p_cons 3.070000e-02   p_joint 9.590000e-02

Joint ci ratio: 8.096751e-02	ci left: 1.006368e-01	ci right 1.091784e-01	k: 2097	n:20000
Cons ci ratio: 1.558784e-01	ci left: 2.825647e-02	ci right 3.308125e-02	k: 612	n:20000
KS ci ratio: 2.425334e-02	ci left: 5.594475e-01	ci right 5.732332e-01	k: 11327	n:20000
ZNF630   20000 perm   4 sec   (5708 perm/sec)   p_kst 5.663500e-01   p_cons 3.060000e-02   p_joint 1.048500e-01

Joint ci ratio: 4.809334e-02	ci left: 1.769217e-01	ci right 1.856734e-01	k: 5438	n:30000
Cons ci ratio: 1.253543e-01	ci left: 2.958465e-02	ci right 3.357342e-02	k: 946	n:30000
KS ci ratio: 1.979579e-02	ci left: 5.609028e-01	ci right 5.721509e-01	k: 16996	n:30000
ZNF630   30000 perm   6 sec   (5427 perm/sec)   p_kst 5.665333e-01   p_cons 3.153333e-02   p_joint 1.812667e-01

Joint ci ratio: 4.358623e-02	ci left: 1.645213e-01	ci right 1.718769e-01	k: 6727	n:40000
Cons ci ratio: 1.076251e-01	ci left: 3.036981e-02	ci right 3.384855e-02	k: 1283	n:40000
KS ci ratio: 1.716507e-02	ci left: 5.610507e-01	ci right 5.707897e-01	k: 22637	n:40000
ZNF630   40000 perm   8 sec   (5248 perm/sec)   p_kst 5.659250e-01   p_cons 3.207500e-02   p_joint 1.681750e-01

Joint ci ratio: 4.123764e-02	ci left: 1.498945e-01	ci right 1.562258e-01	k: 7652	n:50000
Cons ci ratio: 9.574047e-02	ci left: 3.088476e-02	ci right 3.400983e-02	k: 1621	n:50000
KS ci ratio: 1.528702e-02	ci left: 5.636843e-01	ci right 5.723878e-01	k: 28402	n:50000
ZNF630   50000 perm   10 sec   (5111 perm/sec)   p_kst 5.680400e-01   p_cons 3.242000e-02   p_joint 1.530400e-01

Outputting figure to mutsig2_images.part000000000198/ZNF630.3_1990_50000_0.56804_0.03242_0.15304.png
                gene_name: ZNF630
               theta_stop: 0.096 
                    nperm: 50000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.57 
                   p_cons: 0.032 
      ci_cons_bounds_left: 0.031 
     ci_cons_bounds_right: 0.034 
                  p_joint: 0.15 
     ci_joint_bounds_left: 0.15 
    ci_joint_bounds_right: 0.16 

Current progress: 91 percent done.
ZNF544
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.046834e-02	ci left: 9.284392e-01	ci right 9.383065e-01	k: 9335	n:10000
KS ci ratio: 3.181024e-02	ci left: 5.932311e-01	ci right 6.125089e-01	k: 6029	n:10000
ZNF544   10000 perm   2 sec   (6198 perm/sec)   p_kst 6.029000e-01   p_cons 9.335000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF544.2_2164_10000_0.6029_0.9335_1.png
                gene_name: ZNF544
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
ZNF558
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.795168e-02	ci left: 6.535385e-01	ci right 6.721666e-01	k: 6629	n:10000
Cons ci ratio: 3.676892e-02	ci left: 5.220620e-01	ci right 5.417194e-01	k: 5319	n:10000
KS ci ratio: 5.725800e-03	ci left: 9.762092e-01	ci right 9.819069e-01	k: 9792	n:10000
ZNF558   10000 perm   1 sec   (6682 perm/sec)   p_kst 9.792000e-01   p_cons 5.319000e-01   p_joint 6.629000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF558.2_1233_10000_0.9792_0.5319_0.6629.png
                gene_name: ZNF558
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 94 percent done.
ZNF562
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.792043e-02	ci left: 6.540417e-01	ci right 6.726631e-01	k: 6634	n:10000
Cons ci ratio: 3.870345e-02	ci left: 4.964503e-01	ci right 5.161460e-01	k: 5063	n:10000
KS ci ratio: 6.234863e-02	ci left: 2.743835e-01	ci right 2.921429e-01	k: 2832	n:10000
ZNF562   10000 perm   1 sec   (6919 perm/sec)   p_kst 2.832000e-01   p_cons 5.063000e-01   p_joint 6.634000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF562.2_1301_10000_0.2832_0.5063_0.6634.png
                gene_name: ZNF562
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.29 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.66 
     ci_joint_bounds_left: 0.65 
    ci_joint_bounds_right: 0.67 

Current progress: 95 percent done.
ZNF584
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.233591e-02	ci left: 2.187216e-01	ci right 2.352378e-01	k: 2269	n:10000
Cons ci ratio: 9.247904e-02	ci left: 1.452116e-01	ci right 1.593916e-01	k: 1522	n:10000
KS ci ratio: 3.231072e-02	ci left: 5.857036e-01	ci right 6.050408e-01	k: 5954	n:10000
ZNF584   10000 perm   1 sec   (6943 perm/sec)   p_kst 5.954000e-01   p_cons 1.522000e-01   p_joint 2.269000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF584.2_1282_10000_0.5954_0.1522_0.2269.png
                gene_name: ZNF584
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.60 
        ci_ks_bounds_left: 0.59 
       ci_ks_bounds_right: 0.61 
                   p_cons: 0.15 
      ci_cons_bounds_left: 0.15 
     ci_cons_bounds_right: 0.16 
                  p_joint: 0.23 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.24 

Current progress: 96 percent done.
ZNF613
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.616904e-02	ci left: 6.825442e-01	ci right 7.007441e-01	k: 6917	n:10000
KS ci ratio: 2.421431e-02	ci left: 7.149223e-01	ci right 7.325471e-01	k: 7238	n:10000
ZNF613   10000 perm   2 sec   (6312 perm/sec)   p_kst 7.238000e-01   p_cons 6.917000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF613.2_1870_10000_0.7238_0.6917_1.png
                gene_name: ZNF613
               theta_stop: 0.026 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 97 percent done.
ZNF639
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.549126e-02	ci left: 3.235641e-01	ci right 3.421333e-01	k: 3328	n:10000
Cons ci ratio: 6.211914e-02	ci left: 2.758690e-01	ci right 2.936566e-01	k: 2847	n:10000
KS ci ratio: 1.004742e-01	ci left: 1.254236e-01	ci right 1.387915e-01	k: 1320	n:10000
ZNF639   10000 perm   2 sec   (6503 perm/sec)   p_kst 1.320000e-01   p_cons 2.847000e-01   p_joint 3.328000e-01

Joint ci ratio: 7.345275e-02	ci left: 1.200527e-01	ci right 1.292568e-01	k: 2492	n:20000
Cons ci ratio: 4.366240e-02	ci left: 2.809357e-01	ci right 2.935262e-01	k: 5744	n:20000
KS ci ratio: 7.044928e-02	ci left: 1.293073e-01	ci right 1.387993e-01	k: 2680	n:20000
ZNF639   20000 perm   3 sec   (5774 perm/sec)   p_kst 1.340000e-01   p_cons 2.872000e-01   p_joint 1.246000e-01

Outputting figure to mutsig2_images.part000000000198/ZNF639.2_1474_20000_0.134_0.2872_0.1246.png
                gene_name: ZNF639
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.13 

Current progress: 99 percent done.
ZNF642
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 9.056855e-03	ci left: 9.449215e-01	ci right 9.536144e-01	k: 9494	n:10000
KS ci ratio: 1.289569e-02	ci left: 8.964156e-01	ci right 9.081488e-01	k: 9024	n:10000
ZNF642   10000 perm   2 sec   (6424 perm/sec)   p_kst 9.024000e-01   p_cons 9.494000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000198/ZNF642.2_1601_10000_0.9024_0.9494_1.png
                gene_name: ZNF642
               theta_stop: 0.013 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.91 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000198
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 198 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1640>
Subject: Job 9894219: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1640>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000199> was used as the working directory.
Started at Sat Oct  6 00:36:48 2012
Results reported at Sat Oct  6 00:46:42 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000199.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000199.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 199  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000199.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    612.08 sec.
    Max Memory :      3587 MB
    Max Swap   :      5910 MB

    Max Processes  :         7
    Max Threads    :        58

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
199
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 199
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 199: processing genes 17851 - 17940
Calculating significance of each gene.
Using projection method.
17851	ZNF645	5.792388e-02
17852	ZNF646	9.998742e-01
17853	ZNF648	6.589624e-03
17854	ZNF649	5.372780e-01
17855	ZNF652	7.313514e-01
17856	ZNF653	8.950831e-01
17857	ZNF654	4.937981e-01
17858	ZNF655	8.564357e-01
17859	ZNF658	7.769076e-02
17860	ZNF660	6.166436e-01
17861	ZNF662	3.279481e-01
17862	ZNF664	2.814263e-01
17863	ZNF665	5.553794e-01
17864	ZNF667	2.394484e-03
17865	ZNF668	1
17866	ZNF669	1.984894e-01
17867	ZNF670	1.019975e-01
17868	ZNF671	6.364136e-01
17869	ZNF672	1
17870	ZNF673	4.659788e-01
17871	ZNF674	7.076911e-01
17872	ZNF675	1.632808e-01
17873	ZNF676	1.472707e-01
17874	ZNF677	2.934514e-03
17875	ZNF678	2.799663e-01
17876	ZNF680	5.042305e-01
17877	ZNF681	6.329311e-01
17878	ZNF682	1
17879	ZNF683	7.025877e-01
17880	ZNF684	1
17881	ZNF687	6.325550e-01
17882	ZNF688	7.525007e-01
17883	ZNF689	7.255755e-01
17884	ZNF69	2.586821e-01
17885	ZNF691	2.484293e-01
17886	ZNF692	2.720574e-01
17887	ZNF695	7.615474e-01
17888	ZNF696	1
17889	ZNF697	8.859037e-01
17890	ZNF699	5.986264e-01
17891	ZNF7	4.497679e-01
17892	ZNF70	5.359304e-01
17893	ZNF700	2.995589e-01
17894	ZNF701	6.787173e-01
17895	ZNF704	1
17896	ZNF705A	2.490352e-01
17897	ZNF705D	1
17898	ZNF706	2.373078e-01
17899	ZNF707	1
17900	ZNF708	3.179813e-01
17901	ZNF709	1.669100e-01
17902	ZNF71	7.912584e-01
17903	ZNF710	8.325062e-01
17904	ZNF711	6.459090e-01
17905	ZNF713	1.098981e-01
17906	ZNF714	2.310435e-01
17907	ZNF718	5.662135e-01
17908	ZNF721	1.008035e-01
17909	ZNF74	7.853270e-01
17910	ZNF740	1
17911	ZNF746	7.674810e-01
17912	ZNF747	1
17913	ZNF749	6.329436e-01
17914	ZNF750	9.525714e-01
17915	ZNF75A	9.646873e-02
17916	ZNF75D	2.067513e-01
17917	ZNF76	9.752378e-01
In gene ZNF761 the following bins exceed PROBCAP:
    COAD-AA-3851	categ 6	N = 2253    n = 1	mu =   3.95e-07
17918	ZNF761	4.389964e-01
17919	ZNF763	1.462002e-01
17920	ZNF764	1
17921	ZNF765	4.813773e-01
In gene ZNF766 the following bins exceed PROBCAP:
    COAD-AA-3854	categ 6	N = 1423    n = 1	mu =   2.96e-07
17922	ZNF766	3.099125e-01
17923	ZNF768	3.032174e-01
17924	ZNF77	6.733859e-01
17925	ZNF770	3.216823e-01
17926	ZNF772	2.743278e-01
17927	ZNF773	3.341657e-01
17928	ZNF774	6.881903e-01
17929	ZNF775	1
17930	ZNF776	3.655091e-01
17931	ZNF777	9.173147e-01
17932	ZNF778	9.503219e-01
17933	ZNF780A	2.640042e-01
17934	ZNF780B	2.938823e-01
17935	ZNF781	1.701275e-02
17936	ZNF782	1.149385e-01
17937	ZNF784	1
17938	ZNF785	1
17939	ZNF786	9.398092e-01
17940	ZNF787	1
Done

Running MutSig 2:
Scatter job 199: processing genes 17851 - 17940
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF721
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.231157e-02	ci left: 4.519911e-01	ci right 4.716311e-01	k: 4618	n:10000
Cons ci ratio: 4.021851e-02	ci left: 4.772584e-01	ci right 4.969491e-01	k: 4871	n:10000
KS ci ratio: 7.086321e-02	ci left: 2.259279e-01	ci right 2.426271e-01	k: 2342	n:10000
ZNF721   10000 perm   2 sec   (4251 perm/sec)   p_kst 2.342000e-01   p_cons 4.871000e-01   p_joint 4.618000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF721.13_2780_10000_0.2342_0.4871_0.4618.png
                gene_name: ZNF721
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.23 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 2 percent done.
ZNF782
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.731132e-02	ci left: 5.147561e-01	ci right 5.344296e-01	k: 5246	n:10000
Cons ci ratio: 3.956422e-02	ci left: 4.854532e-01	ci right 5.051496e-01	k: 4953	n:10000
KS ci ratio: 6.813143e-02	ci left: 2.401532e-01	ci right 2.571935e-01	k: 2486	n:10000
ZNF782   10000 perm   2 sec   (4961 perm/sec)   p_kst 2.486000e-01   p_cons 4.953000e-01   p_joint 5.246000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF782.12_2116_10000_0.2486_0.4953_0.5246.png
                gene_name: ZNF782
               theta_stop: 0.068 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 3 percent done.
ZNF677
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.399040e-02	ci left: 7.186579e-01	ci right 7.362094e-01	k: 7275	n:10000
Cons ci ratio: 6.808752e-03	ci left: 9.673099e-01	ci right 9.740122e-01	k: 9708	n:10000
KS ci ratio: 4.013009e-02	ci left: 4.783575e-01	ci right 4.980493e-01	k: 4882	n:10000
ZNF677   10000 perm   2 sec   (5124 perm/sec)   p_kst 4.882000e-01   p_cons 9.708000e-01   p_joint 7.275000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF677.11_1767_10000_0.4882_0.9708_0.7275.png
                gene_name: ZNF677
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.73 
     ci_joint_bounds_left: 0.72 
    ci_joint_bounds_right: 0.74 

Current progress: 5 percent done.
ZNF648
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.357268e-02	ci left: 8.867766e-01	ci right 8.989934e-01	k: 8930	n:10000
Cons ci ratio: 2.658696e-02	ci left: 6.756920e-01	ci right 6.940002e-01	k: 6849	n:10000
KS ci ratio: 1.947207e-02	ci left: 7.941537e-01	ci right 8.098700e-01	k: 8021	n:10000
ZNF648   10000 perm   2 sec   (5328 perm/sec)   p_kst 8.021000e-01   p_cons 6.849000e-01   p_joint 8.930000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF648.9_1711_10000_0.8021_0.6849_0.893.png
                gene_name: ZNF648
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.81 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.89 
     ci_joint_bounds_left: 0.89 
    ci_joint_bounds_right: 0.90 

Current progress: 6 percent done.
ZNF667
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.331236e-02	ci left: 4.404146e-01	ci right 4.600144e-01	k: 4502	n:10000
Cons ci ratio: 6.248709e-02	ci left: 2.734923e-01	ci right 2.912347e-01	k: 2823	n:10000
KS ci ratio: 4.634174e-02	ci left: 4.073115e-01	ci right 4.267369e-01	k: 4170	n:10000
ZNF667   10000 perm   2 sec   (5623 perm/sec)   p_kst 4.170000e-01   p_cons 2.823000e-01   p_joint 4.502000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF667.9_1849_10000_0.417_0.2823_0.4502.png
                gene_name: ZNF667
               theta_stop: 0.062 
                    nperm: 10000 
                     p_ks: 0.42 
        ci_ks_bounds_left: 0.41 
       ci_ks_bounds_right: 0.43 
                   p_cons: 0.28 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.29 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 8 percent done.
ZNF678
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.771256e-02	ci left: 3.064958e-01	ci right 3.248117e-01	k: 3156	n:10000
Cons ci ratio: 3.661417e-02	ci left: 5.241642e-01	ci right 5.438160e-01	k: 5340	n:10000
KS ci ratio: 8.443842e-02	ci left: 1.697609e-01	ci right 1.848276e-01	k: 1772	n:10000
ZNF678   10000 perm   2 sec   (5348 perm/sec)   p_kst 1.772000e-01   p_cons 5.340000e-01   p_joint 3.156000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF678.9_1759_10000_0.1772_0.534_0.3156.png
                gene_name: ZNF678
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.32 

Current progress: 9 percent done.
ZNF658
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.352662e-02	ci left: 3.396528e-01	ci right 3.584352e-01	k: 3490	n:10000
Cons ci ratio: 7.076461e-02	ci left: 2.264216e-01	ci right 2.431331e-01	k: 2347	n:10000
KS ci ratio: 5.186117e-02	ci left: 3.540633e-01	ci right 3.730162e-01	k: 3635	n:10000
ZNF658   10000 perm   2 sec   (5005 perm/sec)   p_kst 3.635000e-01   p_cons 2.347000e-01   p_joint 3.490000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF658.8_3196_10000_0.3635_0.2347_0.349.png
                gene_name: ZNF658
               theta_stop: 0.071 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.34 
    ci_joint_bounds_right: 0.36 

Current progress: 11 percent done.
ZNF665
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.581766e-02	ci left: 3.209831e-01	ci right 3.395159e-01	k: 3302	n:10000
Cons ci ratio: 1.010478e-01	ci left: 1.241518e-01	ci right 1.374641e-01	k: 1307	n:10000
KS ci ratio: 8.990802e-03	ci left: 9.456495e-01	ci right 9.542860e-01	k: 9501	n:10000
ZNF665   10000 perm   2 sec   (5156 perm/sec)   p_kst 9.501000e-01   p_cons 1.307000e-01   p_joint 3.302000e-01

Joint ci ratio: 3.533853e-02	ci left: 3.741128e-01	ci right 3.876218e-01	k: 7617	n:20000
Cons ci ratio: 7.218476e-02	ci left: 1.238421e-01	ci right 1.331661e-01	k: 2569	n:20000
KS ci ratio: 6.598945e-03	ci left: 9.431881e-01	ci right 9.494814e-01	k: 18928	n:20000
ZNF665   20000 perm   4 sec   (4612 perm/sec)   p_kst 9.464000e-01   p_cons 1.284500e-01   p_joint 3.808500e-01

Outputting figure to mutsig2_images.part000000000199/ZNF665.8_2049_20000_0.9464_0.12845_0.38085.png
                gene_name: ZNF665
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 12 percent done.
ZNF676
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.426881e-02	ci left: 7.140138e-01	ci right 7.316562e-01	k: 7229	n:10000
Cons ci ratio: 1.945368e-02	ci left: 7.944581e-01	ci right 8.101654e-01	k: 8024	n:10000
KS ci ratio: 3.577655e-02	ci left: 5.356788e-01	ci right 5.552947e-01	k: 5455	n:10000
ZNF676   10000 perm   2 sec   (4519 perm/sec)   p_kst 5.455000e-01   p_cons 8.024000e-01   p_joint 7.229000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF676.8_1779_10000_0.5455_0.8024_0.7229.png
                gene_name: ZNF676
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.72 
     ci_joint_bounds_left: 0.71 
    ci_joint_bounds_right: 0.73 

Current progress: 14 percent done.
ZNF700
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.323893e-01	ci left: 7.524035e-02	ci right 8.600545e-02	k: 805	n:10000
Cons ci ratio: 8.098835e-02	ci left: 1.820569e-01	ci right 1.975242e-01	k: 1897	n:10000
KS ci ratio: 1.642256e-01	ci left: 4.945836e-02	ci right 5.840374e-02	k: 538	n:10000
ZNF700   10000 perm   2 sec   (5391 perm/sec)   p_kst 5.380000e-02   p_cons 1.897000e-01   p_joint 8.050000e-02

Joint ci ratio: 9.147201e-02	ci left: 8.024030e-02	ci right 8.798112e-02	k: 1681	n:20000
Cons ci ratio: 5.711964e-02	ci left: 1.851273e-01	ci right 1.960628e-01	k: 3811	n:20000
KS ci ratio: 1.186500e-01	ci left: 4.867167e-02	ci right 5.485947e-02	k: 1034	n:20000
ZNF700   20000 perm   4 sec   (4784 perm/sec)   p_kst 5.170000e-02   p_cons 1.905500e-01   p_joint 8.405000e-02

Joint ci ratio: 8.728080e-02	ci left: 6.024376e-02	ci right 6.577457e-02	k: 1889	n:30000
Cons ci ratio: 4.508082e-02	ci left: 1.967420e-01	ci right 2.058492e-01	k: 6038	n:30000
KS ci ratio: 9.624228e-02	ci left: 4.987266e-02	ci right 5.494779e-02	k: 1571	n:30000
ZNF700   30000 perm   7 sec   (4590 perm/sec)   p_kst 5.236667e-02   p_cons 2.012667e-01   p_joint 6.296667e-02

Outputting figure to mutsig2_images.part000000000199/ZNF700.8_2245_30000_0.052367_0.20127_0.062967.png
                gene_name: ZNF700
               theta_stop: 0.096 
                    nperm: 30000 
                     p_ks: 0.052 
        ci_ks_bounds_left: 0.050 
       ci_ks_bounds_right: 0.055 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.063 
     ci_joint_bounds_left: 0.060 
    ci_joint_bounds_right: 0.066 

Current progress: 15 percent done.
ZNF709
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.950098e-02	ci left: 4.862528e-01	ci right 5.059495e-01	k: 4961	n:10000
Cons ci ratio: 3.198987e-02	ci left: 5.905209e-01	ci right 6.098207e-01	k: 6002	n:10000
KS ci ratio: 5.404887e-02	ci left: 3.352819e-01	ci right 3.540087e-01	k: 3446	n:10000
ZNF709   10000 perm   2 sec   (4180 perm/sec)   p_kst 3.446000e-01   p_cons 6.002000e-01   p_joint 4.961000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF709.8_1942_10000_0.3446_0.6002_0.4961.png
                gene_name: ZNF709
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.60 
      ci_cons_bounds_left: 0.59 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.50 
     ci_joint_bounds_left: 0.49 
    ci_joint_bounds_right: 0.51 

Current progress: 17 percent done.
ZNF770
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.748407e-02	ci left: 6.610882e-01	ci right 6.796124e-01	k: 6704	n:10000
Cons ci ratio: 3.629176e-02	ci left: 5.285691e-01	ci right 5.482085e-01	k: 5384	n:10000
KS ci ratio: 2.767080e-02	ci left: 6.580680e-01	ci right 6.766344e-01	k: 6674	n:10000
ZNF770   10000 perm   2 sec   (4774 perm/sec)   p_kst 6.674000e-01   p_cons 5.384000e-01   p_joint 6.704000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF770.7_2080_10000_0.6674_0.5384_0.6704.png
                gene_name: ZNF770
               theta_stop: 0.036 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.67 
     ci_joint_bounds_left: 0.66 
    ci_joint_bounds_right: 0.68 

Current progress: 18 percent done.
ZNF675
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.318085e-02	ci left: 7.321932e-01	ci right 7.494663e-01	k: 7409	n:10000
Cons ci ratio: 5.276977e-02	ci left: 3.461116e-01	ci right 3.649727e-01	k: 3555	n:10000
KS ci ratio: 6.927536e-03	ci left: 9.662559e-01	ci right 9.730668e-01	k: 9698	n:10000
ZNF675   10000 perm   2 sec   (4241 perm/sec)   p_kst 9.698000e-01   p_cons 3.555000e-01   p_joint 7.409000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF675.6_1723_10000_0.9698_0.3555_0.7409.png
                gene_name: ZNF675
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 20 percent done.
ZNF7
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.886187e-01	ci left: 3.748413e-02	ci right 4.538584e-02	k: 413	n:10000
Cons ci ratio: 9.316556e-02	ci left: 1.433484e-01	ci right 1.574560e-01	k: 1503	n:10000
KS ci ratio: 2.408683e-01	ci left: 2.268733e-02	ci right 2.899301e-02	k: 257	n:10000
ZNF7   10000 perm   2 sec   (5825 perm/sec)   p_kst 2.570000e-02   p_cons 1.503000e-01   p_joint 4.130000e-02

Joint ci ratio: 1.684891e-01	ci left: 2.412627e-02	ci right 2.861286e-02	k: 526	n:20000
Cons ci ratio: 6.877018e-02	ci left: 1.349230e-01	ci right 1.445820e-01	k: 2794	n:20000
KS ci ratio: 1.698176e-01	ci left: 2.374280e-02	ci right 2.819646e-02	k: 518	n:20000
ZNF7   20000 perm   4 sec   (5110 perm/sec)   p_kst 2.590000e-02   p_cons 1.397000e-01   p_joint 2.630000e-02

Joint ci ratio: 1.525583e-01	ci left: 1.988850e-02	ci right 2.320506e-02	k: 645	n:30000
Cons ci ratio: 5.745183e-02	ci left: 1.304605e-01	ci right 1.382105e-01	k: 4029	n:30000
KS ci ratio: 1.417235e-01	ci left: 2.310186e-02	ci right 2.665763e-02	k: 745	n:30000
ZNF7   30000 perm   6 sec   (4838 perm/sec)   p_kst 2.483333e-02   p_cons 1.343000e-01   p_joint 2.150000e-02

Joint ci ratio: 1.411185e-01	ci left: 1.758805e-02	ci right 2.028243e-02	k: 756	n:40000
Cons ci ratio: 5.005301e-02	ci left: 1.296123e-01	ci right 1.362911e-01	k: 5317	n:40000
KS ci ratio: 1.249219e-01	ci left: 2.252228e-02	ci right 2.554736e-02	k: 960	n:40000
ZNF7   40000 perm   9 sec   (4635 perm/sec)   p_kst 2.400000e-02   p_cons 1.329250e-01   p_joint 1.890000e-02

Joint ci ratio: 1.225268e-01	ci left: 1.882959e-02	ci right 2.130657e-02	k: 1002	n:50000
Cons ci ratio: 4.489160e-02	ci left: 1.293416e-01	ci right 1.353012e-01	k: 6615	n:50000
KS ci ratio: 1.082416e-01	ci left: 2.417481e-02	ci right 2.696064e-02	k: 1277	n:50000
ZNF7   50000 perm   11 sec   (4526 perm/sec)   p_kst 2.554000e-02   p_cons 1.323000e-01   p_joint 2.004000e-02

Joint ci ratio: 1.230481e-01	ci left: 1.560893e-02	ci right 1.767154e-02	k: 997	n:60000
Cons ci ratio: 4.102854e-02	ci left: 1.293341e-01	ci right 1.347682e-01	k: 7922	n:60000
KS ci ratio: 9.912960e-02	ci left: 2.413947e-02	ci right 2.667339e-02	k: 1523	n:60000
ZNF7   60000 perm   14 sec   (4440 perm/sec)   p_kst 2.538333e-02   p_cons 1.320333e-01   p_joint 1.661667e-02

Joint ci ratio: 1.149455e-01	ci left: 1.540266e-02	ci right 1.729488e-02	k: 1143	n:70000
Cons ci ratio: 3.813375e-02	ci left: 1.286504e-01	ci right 1.336659e-01	k: 9180	n:70000
KS ci ratio: 9.228346e-02	ci left: 2.396772e-02	ci right 2.630044e-02	k: 1758	n:70000
ZNF7   70000 perm   16 sec   (4363 perm/sec)   p_kst 2.511429e-02   p_cons 1.311429e-01   p_joint 1.632857e-02

Joint ci ratio: 1.143571e-01	ci left: 1.364660e-02	ci right 1.531389e-02	k: 1157	n:80000
Cons ci ratio: 3.573867e-02	ci left: 1.283838e-01	ci right 1.330680e-01	k: 10457	n:80000
KS ci ratio: 8.611017e-02	ci left: 2.416163e-02	ci right 2.634799e-02	k: 2019	n:80000
ZNF7   80000 perm   19 sec   (4282 perm/sec)   p_kst 2.523750e-02   p_cons 1.307125e-01   p_joint 1.446250e-02

Joint ci ratio: 9.972605e-02	ci left: 1.603542e-02	ci right 1.772926e-02	k: 1518	n:90000
Cons ci ratio: 3.367707e-02	ci left: 1.286366e-01	ci right 1.330539e-01	k: 11775	n:90000
KS ci ratio: 8.112143e-02	ci left: 2.426204e-02	ci right 2.632427e-02	k: 2275	n:90000
ZNF7   90000 perm   21 sec   (4214 perm/sec)   p_kst 2.527778e-02   p_cons 1.308333e-01   p_joint 1.686667e-02

Outputting figure to mutsig2_images.part000000000199/ZNF7.6_2077_90000_0.025278_0.13083_0.016867.png
                gene_name: ZNF7
               theta_stop: 0.100 
                    nperm: 90000 
                     p_ks: 0.025 
        ci_ks_bounds_left: 0.024 
       ci_ks_bounds_right: 0.026 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.017 
     ci_joint_bounds_left: 0.016 
    ci_joint_bounds_right: 0.018 

Current progress: 21 percent done.
ZNF708
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.802118e-02	ci left: 3.042144e-01	ci right 3.224944e-01	k: 3133	n:10000
Cons ci ratio: 1.034263e-01	ci left: 1.190667e-01	ci right 1.321523e-01	k: 1255	n:10000
KS ci ratio: 2.539863e-02	ci left: 6.952470e-01	ci right 7.132339e-01	k: 7043	n:10000
ZNF708   10000 perm   2 sec   (5629 perm/sec)   p_kst 7.043000e-01   p_cons 1.255000e-01   p_joint 3.133000e-01

Joint ci ratio: 3.966615e-02	ci left: 3.215435e-01	ci right 3.346065e-01	k: 6561	n:20000
Cons ci ratio: 7.212038e-02	ci left: 1.240390e-01	ci right 1.333692e-01	k: 2573	n:20000
KS ci ratio: 1.788459e-02	ci left: 6.996816e-01	ci right 7.123584e-01	k: 14121	n:20000
ZNF708   20000 perm   4 sec   (5004 perm/sec)   p_kst 7.060500e-01   p_cons 1.286500e-01   p_joint 3.280500e-01

Outputting figure to mutsig2_images.part000000000199/ZNF708.6_1708_20000_0.70605_0.12865_0.32805.png
                gene_name: ZNF708
               theta_stop: 0.072 
                    nperm: 20000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.71 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.33 
     ci_joint_bounds_left: 0.32 
    ci_joint_bounds_right: 0.33 

Current progress: 23 percent done.
ZNF749
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.601925e-02	ci left: 4.106995e-01	ci right 4.301469e-01	k: 4204	n:10000
Cons ci ratio: 8.357525e-03	ci left: 9.524213e-01	ci right 9.605100e-01	k: 9566	n:10000
KS ci ratio: 7.184476e-02	ci left: 2.210904e-01	ci right 2.376675e-01	k: 2293	n:10000
ZNF749   10000 perm   2 sec   (5026 perm/sec)   p_kst 2.293000e-01   p_cons 9.566000e-01   p_joint 4.204000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF749.6_2349_10000_0.2293_0.9566_0.4204.png
                gene_name: ZNF749
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.96 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.42 
     ci_joint_bounds_left: 0.41 
    ci_joint_bounds_right: 0.43 

Current progress: 24 percent done.
ZNF780A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.391215e-02	ci left: 4.336308e-01	ci right 4.532021e-01	k: 4434	n:10000
Cons ci ratio: 4.657119e-02	ci left: 4.049202e-01	ci right 4.243295e-01	k: 4146	n:10000
KS ci ratio: 5.332702e-02	ci left: 3.413419e-01	ci right 3.601452e-01	k: 3507	n:10000
ZNF780A   10000 perm   2 sec   (5209 perm/sec)   p_kst 3.507000e-01   p_cons 4.146000e-01   p_joint 4.434000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF780A.6_2124_10000_0.3507_0.4146_0.4434.png
                gene_name: ZNF780A
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.44 
     ci_joint_bounds_left: 0.43 
    ci_joint_bounds_right: 0.45 

Current progress: 26 percent done.
ZNF780B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.794440e-02	ci left: 5.063518e-01	ci right 5.260388e-01	k: 5162	n:10000
Cons ci ratio: 7.461446e-02	ci left: 2.081653e-01	ci right 2.244003e-01	k: 2162	n:10000
KS ci ratio: 1.735119e-02	ci left: 8.287986e-01	ci right 8.434050e-01	k: 8362	n:10000
ZNF780B   10000 perm   2 sec   (5054 perm/sec)   p_kst 8.362000e-01   p_cons 2.162000e-01   p_joint 5.162000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF780B.6_2518_10000_0.8362_0.2162_0.5162.png
                gene_name: ZNF780B
               theta_stop: 0.075 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.84 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.22 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 27 percent done.
ZNF652
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.194986e-02	ci left: 7.528195e-01	ci right 7.696281e-01	k: 7613	n:10000
Cons ci ratio: 6.962823e-03	ci left: 9.659399e-01	ci right 9.727830e-01	k: 9695	n:10000
KS ci ratio: 4.260207e-02	ci left: 4.485975e-01	ci right 4.682268e-01	k: 4584	n:10000
ZNF652   10000 perm   2 sec   (5707 perm/sec)   p_kst 4.584000e-01   p_cons 9.695000e-01   p_joint 7.613000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF652.5_1841_10000_0.4584_0.9695_0.7613.png
                gene_name: ZNF652
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.97 
      ci_cons_bounds_left: 0.97 
     ci_cons_bounds_right: 0.97 
                  p_joint: 0.76 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.77 

Current progress: 29 percent done.
ZNF662
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.840456e-02	ci left: 8.117176e-01	ci right 8.268959e-01	k: 8194	n:10000
Cons ci ratio: 3.780034e-02	ci left: 5.082525e-01	ci right 5.279369e-01	k: 5181	n:10000
KS ci ratio: 2.383317e-02	ci left: 7.212834e-01	ci right 7.387824e-01	k: 7301	n:10000
ZNF662   10000 perm   2 sec   (6082 perm/sec)   p_kst 7.301000e-01   p_cons 5.181000e-01   p_joint 8.194000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF662.5_1484_10000_0.7301_0.5181_0.8194.png
                gene_name: ZNF662
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.73 
        ci_ks_bounds_left: 0.72 
       ci_ks_bounds_right: 0.74 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.53 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 30 percent done.
ZNF687
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.571168e-02	ci left: 5.365801e-01	ci right 5.561928e-01	k: 5464	n:10000
KS ci ratio: 4.397447e-02	ci left: 4.329326e-01	ci right 4.525008e-01	k: 4427	n:10000
ZNF687   10000 perm   2 sec   (4793 perm/sec)   p_kst 4.427000e-01   p_cons 5.464000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF687.5_3746_10000_0.4427_0.5464_1.png
                gene_name: ZNF687
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.55 
      ci_cons_bounds_left: 0.54 
     ci_cons_bounds_right: 0.56 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 32 percent done.
ZNF692
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.642078e-02	ci left: 2.002780e-01	ci right 2.162923e-01	k: 2082	n:10000
Cons ci ratio: 7.172305e-02	ci left: 2.216827e-01	ci right 2.382749e-01	k: 2299	n:10000
KS ci ratio: 8.018115e-02	ci left: 1.851083e-01	ci right 2.006710e-01	k: 1928	n:10000
ZNF692   10000 perm   2 sec   (5991 perm/sec)   p_kst 1.928000e-01   p_cons 2.299000e-01   p_joint 2.082000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF692.5_1623_10000_0.1928_0.2299_0.2082.png
                gene_name: ZNF692
               theta_stop: 0.080 
                    nperm: 10000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.19 
       ci_ks_bounds_right: 0.20 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.24 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.20 
    ci_joint_bounds_right: 0.22 

Current progress: 33 percent done.
ZNF773
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.207744e-01	ci left: 8.951617e-02	ci right 1.011208e-01	k: 952	n:10000
Cons ci ratio: 1.448894e-01	ci left: 6.323884e-02	ci right 7.321448e-02	k: 681	n:10000
KS ci ratio: 9.093456e-02	ci left: 1.495278e-01	ci right 1.638728e-01	k: 1566	n:10000
ZNF773   10000 perm   2 sec   (5829 perm/sec)   p_kst 1.566000e-01   p_cons 6.810000e-02   p_joint 9.520000e-02

Joint ci ratio: 1.003771e-01	ci left: 6.728287e-02	ci right 7.444250e-02	k: 1416	n:20000
Cons ci ratio: 1.033106e-01	ci left: 6.367065e-02	ci right 7.065583e-02	k: 1342	n:20000
KS ci ratio: 6.358125e-02	ci left: 1.545984e-01	ci right 1.648007e-01	k: 3193	n:20000
ZNF773   20000 perm   4 sec   (5226 perm/sec)   p_kst 1.596500e-01   p_cons 6.710000e-02   p_joint 7.080000e-02

Joint ci ratio: 8.285315e-02	ci left: 6.654940e-02	ci right 7.233432e-02	k: 2082	n:30000
Cons ci ratio: 8.474859e-02	ci left: 6.373869e-02	ci right 6.941226e-02	k: 1996	n:30000
KS ci ratio: 5.169601e-02	ci left: 1.566595e-01	ci right 1.650063e-01	k: 4824	n:30000
ZNF773   30000 perm   6 sec   (4980 perm/sec)   p_kst 1.608000e-01   p_cons 6.653333e-02   p_joint 6.940000e-02

Outputting figure to mutsig2_images.part000000000199/ZNF773.5_1345_30000_0.1608_0.066533_0.0694.png
                gene_name: ZNF773
               theta_stop: 0.085 
                    nperm: 30000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.17 
                   p_cons: 0.067 
      ci_cons_bounds_left: 0.064 
     ci_cons_bounds_right: 0.069 
                  p_joint: 0.069 
     ci_joint_bounds_left: 0.067 
    ci_joint_bounds_right: 0.072 

Current progress: 35 percent done.
ZNF781
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.844185e-02	ci left: 8.111081e-01	ci right 8.263058e-01	k: 8188	n:10000
Cons ci ratio: 4.802080e-02	ci left: 3.901793e-01	ci right 4.094791e-01	k: 3998	n:10000
KS ci ratio: 8.286976e-03	ci left: 9.531520e-01	ci right 9.611789e-01	k: 9573	n:10000
ZNF781   10000 perm   2 sec   (5968 perm/sec)   p_kst 9.573000e-01   p_cons 3.998000e-01   p_joint 8.188000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF781.5_988_10000_0.9573_0.3998_0.8188.png
                gene_name: ZNF781
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.96 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.82 
     ci_joint_bounds_left: 0.81 
    ci_joint_bounds_right: 0.83 

Current progress: 36 percent done.
ZNF670
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.999184e-02	ci left: 7.855326e-01	ci right 8.014960e-01	k: 7936	n:10000
KS ci ratio: 8.847932e-03	ci left: 9.472103e-01	ci right 9.557242e-01	k: 9516	n:10000
ZNF670   10000 perm   2 sec   (5276 perm/sec)   p_kst 9.516000e-01   p_cons 7.936000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF670.4_1186_10000_0.9516_0.7936_1.png
                gene_name: ZNF670
               theta_stop: 0.020 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.95 
       ci_ks_bounds_right: 0.96 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 38 percent done.
ZNF680
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.590890e-02	ci left: 2.526106e-01	ci right 2.699286e-01	k: 2612	n:10000
Cons ci ratio: 5.278129e-02	ci left: 3.460122e-01	ci right 3.648721e-01	k: 3554	n:10000
KS ci ratio: 9.107243e-02	ci left: 1.491353e-01	ci right 1.634655e-01	k: 1562	n:10000
ZNF680   10000 perm   2 sec   (5551 perm/sec)   p_kst 1.562000e-01   p_cons 3.554000e-01   p_joint 2.612000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF680.4_1732_10000_0.1562_0.3554_0.2612.png
                gene_name: ZNF680
               theta_stop: 0.091 
                    nperm: 10000 
                     p_ks: 0.16 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.36 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.26 
     ci_joint_bounds_left: 0.25 
    ci_joint_bounds_right: 0.27 

Current progress: 39 percent done.
ZNF699
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.643068e-02	ci left: 5.266669e-01	ci right 5.463118e-01	k: 5365	n:10000
Cons ci ratio: 8.819135e-03	ci left: 9.475226e-01	ci right 9.560117e-01	k: 9519	n:10000
KS ci ratio: 7.404691e-02	ci left: 2.107297e-01	ci right 2.270344e-01	k: 2188	n:10000
ZNF699   10000 perm   2 sec   (4755 perm/sec)   p_kst 2.188000e-01   p_cons 9.519000e-01   p_joint 5.365000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF699.4_1949_10000_0.2188_0.9519_0.5365.png
                gene_name: ZNF699
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 41 percent done.
ZNF714
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.072707e-01	ci left: 1.114460e-01	ci right 1.241776e-01	k: 1177	n:10000
Cons ci ratio: 5.802118e-02	ci left: 3.042144e-01	ci right 3.224944e-01	k: 3133	n:10000
KS ci ratio: 1.747592e-01	ci left: 4.370078e-02	ci right 5.216506e-02	k: 478	n:10000
ZNF714   10000 perm   2 sec   (5762 perm/sec)   p_kst 4.780000e-02   p_cons 3.133000e-01   p_joint 1.177000e-01

Joint ci ratio: 8.645901e-02	ci left: 8.915632e-02	ci right 9.726239e-02	k: 1863	n:20000
Cons ci ratio: 4.063495e-02	ci left: 3.110505e-01	ci right 3.240026e-01	k: 6350	n:20000
KS ci ratio: 1.250222e-01	ci left: 4.391389e-02	ci right 4.981875e-02	k: 936	n:20000
ZNF714   20000 perm   4 sec   (5102 perm/sec)   p_kst 4.680000e-02   p_cons 3.175000e-01   p_joint 9.315000e-02

Joint ci ratio: 7.597667e-02	ci left: 7.839518e-02	ci right 8.461949e-02	k: 2444	n:30000
Cons ci ratio: 3.310827e-02	ci left: 3.131628e-01	ci right 3.237391e-01	k: 9553	n:30000
KS ci ratio: 1.045026e-01	ci left: 4.245416e-02	ci right 4.716783e-02	k: 1343	n:30000
ZNF714   30000 perm   6 sec   (4852 perm/sec)   p_kst 4.476667e-02   p_cons 3.184333e-01   p_joint 8.146667e-02

Joint ci ratio: 5.491293e-02	ci left: 1.098884e-01	ci right 1.161179e-01	k: 4519	n:40000
Cons ci ratio: 2.961823e-02	ci left: 3.000169e-01	ci right 3.090615e-01	k: 12181	n:40000
KS ci ratio: 9.098164e-02	ci left: 4.232868e-02	ci right 4.638780e-02	k: 1773	n:40000
ZNF714   40000 perm   8 sec   (4716 perm/sec)   p_kst 4.432500e-02   p_cons 3.045250e-01   p_joint 1.129750e-01

Outputting figure to mutsig2_images.part000000000199/ZNF714.4_1677_40000_0.044325_0.30452_0.11298.png
                gene_name: ZNF714
               theta_stop: 0.091 
                    nperm: 40000 
                     p_ks: 0.044 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.046 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.30 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 42 percent done.
ZNF75D
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.905540e-02	ci left: 2.352124e-01	ci right 2.521372e-01	k: 2436	n:10000
Cons ci ratio: 6.847959e-02	ci left: 2.382755e-01	ci right 2.552722e-01	k: 2467	n:10000
KS ci ratio: 6.568770e-02	ci left: 2.538964e-01	ci right 2.712421e-01	k: 2625	n:10000
ZNF75D   10000 perm   2 sec   (6122 perm/sec)   p_kst 2.625000e-01   p_cons 2.467000e-01   p_joint 2.436000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF75D.4_1553_10000_0.2625_0.2467_0.2436.png
                gene_name: ZNF75D
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.25 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.26 
                  p_joint: 0.24 
     ci_joint_bounds_left: 0.24 
    ci_joint_bounds_right: 0.25 

Current progress: 44 percent done.
ZNF761
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.558222e-02	ci left: 5.383830e-01	ci right 5.579889e-01	k: 5482	n:10000
Cons ci ratio: 3.942995e-02	ci left: 4.871524e-01	ci right 5.068493e-01	k: 4970	n:10000
KS ci ratio: 4.732758e-02	ci left: 3.971502e-01	ci right 4.165041e-01	k: 4068	n:10000
ZNF761   10000 perm   2 sec   (5490 perm/sec)   p_kst 4.068000e-01   p_cons 4.970000e-01   p_joint 5.482000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF761.4_2254_10000_0.4068_0.497_0.5482.png
                gene_name: ZNF761
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 45 percent done.
ZNF765
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.350532e-02	ci left: 4.382197e-01	ci right 4.578106e-01	k: 4480	n:10000
Cons ci ratio: 2.427486e-02	ci left: 7.139129e-01	ci right 7.315572e-01	k: 7228	n:10000
KS ci ratio: 6.616595e-02	ci left: 2.511271e-01	ci right 2.684130e-01	k: 2597	n:10000
ZNF765   10000 perm   2 sec   (6065 perm/sec)   p_kst 2.597000e-01   p_cons 7.228000e-01   p_joint 4.480000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF765.4_1584_10000_0.2597_0.7228_0.448.png
                gene_name: ZNF765
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.72 
      ci_cons_bounds_left: 0.71 
     ci_cons_bounds_right: 0.73 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 47 percent done.
ZNF768
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.103001e-02	ci left: 9.214164e-01	ci right 9.317334e-01	k: 9267	n:10000
KS ci ratio: 1.236972e-02	ci left: 9.037070e-01	ci right 9.150532e-01	k: 9095	n:10000
ZNF768   10000 perm   2 sec   (5103 perm/sec)   p_kst 9.095000e-01   p_cons 9.267000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF768.4_1631_10000_0.9095_0.9267_1.png
                gene_name: ZNF768
               theta_stop: 0.012 
                    nperm: 10000 
                     p_ks: 0.91 
        ci_ks_bounds_left: 0.90 
       ci_ks_bounds_right: 0.92 
                   p_cons: 0.93 
      ci_cons_bounds_left: 0.92 
     ci_cons_bounds_right: 0.93 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
ZNF645
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.844114e-02	ci left: 4.998504e-01	ci right 5.195439e-01	k: 5097	n:10000
Cons ci ratio: 8.241153e-02	ci left: 1.768418e-01	ci right 1.921425e-01	k: 1844	n:10000
KS ci ratio: 2.155724e-02	ci left: 7.593970e-01	ci right 7.760468e-01	k: 7678	n:10000
ZNF645   10000 perm   2 sec   (6111 perm/sec)   p_kst 7.678000e-01   p_cons 1.844000e-01   p_joint 5.097000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF645.3_1282_10000_0.7678_0.1844_0.5097.png
                gene_name: ZNF645
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.18 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 0.51 
     ci_joint_bounds_left: 0.50 
    ci_joint_bounds_right: 0.52 

Current progress: 50 percent done.
ZNF654
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.331431e-02	ci left: 2.682448e-01	ci right 2.858852e-01	k: 2770	n:10000
Cons ci ratio: 1.061502e-01	ci left: 1.135945e-01	ci right 1.264278e-01	k: 1199	n:10000
KS ci ratio: 4.726880e-02	ci left: 3.977478e-01	ci right 4.171061e-01	k: 4074	n:10000
ZNF654   10000 perm   2 sec   (6071 perm/sec)   p_kst 4.074000e-01   p_cons 1.199000e-01   p_joint 2.770000e-01

Joint ci ratio: 6.313488e-02	ci left: 1.564738e-01	ci right 1.667248e-01	k: 3231	n:20000
Cons ci ratio: 7.448022e-02	ci left: 1.171008e-01	ci right 1.262095e-01	k: 2432	n:20000
KS ci ratio: 3.334431e-02	ci left: 4.017759e-01	ci right 4.154506e-01	k: 8172	n:20000
ZNF654   20000 perm   4 sec   (5364 perm/sec)   p_kst 4.086000e-01   p_cons 1.216000e-01   p_joint 1.615500e-01

Outputting figure to mutsig2_images.part000000000199/ZNF654.3_1754_20000_0.4086_0.1216_0.16155.png
                gene_name: ZNF654
               theta_stop: 0.074 
                    nperm: 20000 
                     p_ks: 0.41 
        ci_ks_bounds_left: 0.40 
       ci_ks_bounds_right: 0.42 
                   p_cons: 0.12 
      ci_cons_bounds_left: 0.12 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.16 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 52 percent done.
ZNF664
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.073150e-02	ci left: 6.096996e-01	ci right 6.288309e-01	k: 6193	n:10000
Cons ci ratio: 2.808310e-02	ci left: 6.514250e-01	ci right 6.700813e-01	k: 6608	n:10000
KS ci ratio: 4.819129e-02	ci left: 3.884867e-01	ci right 4.077727e-01	k: 3981	n:10000
ZNF664   10000 perm   1 sec   (6915 perm/sec)   p_kst 3.981000e-01   p_cons 6.608000e-01   p_joint 6.193000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF664.3_790_10000_0.3981_0.6608_0.6193.png
                gene_name: ZNF664
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.40 
        ci_ks_bounds_left: 0.39 
       ci_ks_bounds_right: 0.41 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 53 percent done.
ZNF671
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.757927e-02	ci left: 3.074877e-01	ci right 3.258192e-01	k: 3166	n:10000
Cons ci ratio: 4.948217e-02	ci left: 3.759451e-01	ci right 3.951216e-01	k: 3855	n:10000
KS ci ratio: 8.511018e-02	ci left: 1.674999e-01	ci right 1.824899e-01	k: 1749	n:10000
ZNF671   10000 perm   2 sec   (6187 perm/sec)   p_kst 1.749000e-01   p_cons 3.855000e-01   p_joint 3.166000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF671.3_1621_10000_0.1749_0.3855_0.3166.png
                gene_name: ZNF671
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.39 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.40 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 55 percent done.
ZNF70
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.286912e-01	ci left: 7.941135e-02	ci right 9.043186e-02	k: 848	n:10000
Cons ci ratio: 3.264030e-02	ci left: 5.807868e-01	ci right 6.001604e-01	k: 5905	n:10000
KS ci ratio: 2.650703e-01	ci left: 1.856024e-02	ci right 2.432325e-02	k: 213	n:10000
ZNF70   10000 perm   2 sec   (6193 perm/sec)   p_kst 2.130000e-02   p_cons 5.905000e-01   p_joint 8.480000e-02

Joint ci ratio: 7.976226e-02	ci left: 1.034359e-01	ci right 1.120785e-01	k: 2154	n:20000
Cons ci ratio: 2.371948e-02	ci left: 5.703679e-01	ci right 5.841097e-01	k: 11545	n:20000
KS ci ratio: 1.876616e-01	ci left: 1.934382e-02	ci right 2.339700e-02	k: 426	n:20000
ZNF70   20000 perm   4 sec   (5470 perm/sec)   p_kst 2.130000e-02   p_cons 5.772500e-01   p_joint 1.077000e-01

Joint ci ratio: 6.667965e-02	ci left: 9.984504e-02	ci right 1.067653e-01	k: 3098	n:30000
Cons ci ratio: 1.932431e-02	ci left: 5.727212e-01	ci right 5.839303e-01	k: 17350	n:30000
KS ci ratio: 1.547767e-01	ci left: 1.931113e-02	ci right 2.258257e-02	k: 627	n:30000
ZNF70   30000 perm   6 sec   (5168 perm/sec)   p_kst 2.090000e-02   p_cons 5.783333e-01   p_joint 1.032667e-01

Joint ci ratio: 7.002539e-02	ci left: 7.010034e-02	ci right 7.521191e-02	k: 2905	n:40000
Cons ci ratio: 1.677356e-02	ci left: 5.723659e-01	ci right 5.820729e-01	k: 23089	n:40000
KS ci ratio: 1.344791e-01	ci left: 1.939962e-02	ci right 2.222055e-02	k: 831	n:40000
ZNF70   40000 perm   8 sec   (4985 perm/sec)   p_kst 2.077500e-02   p_cons 5.772250e-01   p_joint 7.262500e-02

Joint ci ratio: 6.114351e-02	ci left: 7.363274e-02	ci right 7.829663e-02	k: 3797	n:50000
Cons ci ratio: 1.501650e-02	ci left: 5.724350e-01	ci right 5.811161e-01	k: 28839	n:50000
KS ci ratio: 1.212984e-01	ci left: 1.921762e-02	ci right 2.171849e-02	k: 1022	n:50000
ZNF70   50000 perm   10 sec   (4860 perm/sec)   p_kst 2.044000e-02   p_cons 5.767800e-01   p_joint 7.594000e-02

Joint ci ratio: 6.057929e-02	ci left: 6.325376e-02	ci right 6.722175e-02	k: 3913	n:60000
Cons ci ratio: 1.370434e-02	ci left: 5.729516e-01	ci right 5.808743e-01	k: 34615	n:60000
KS ci ratio: 1.112212e-01	ci left: 1.915408e-02	ci right 2.142599e-02	k: 1216	n:60000
ZNF70   60000 perm   13 sec   (4751 perm/sec)   p_kst 2.026667e-02   p_cons 5.769167e-01   p_joint 6.521667e-02

Joint ci ratio: 5.125556e-02	ci left: 7.513434e-02	ci right 7.910080e-02	k: 5397	n:70000
Cons ci ratio: 1.267561e-02	ci left: 5.737161e-01	ci right 5.810489e-01	k: 40417	n:70000
KS ci ratio: 1.024140e-01	ci left: 1.944911e-02	ci right 2.156233e-02	k: 1434	n:70000
ZNF70   70000 perm   15 sec   (4654 perm/sec)   p_kst 2.048571e-02   p_cons 5.773857e-01   p_joint 7.710000e-02

Joint ci ratio: 4.619933e-02	ci left: 8.065190e-02	ci right 8.447843e-02	k: 6604	n:80000
Cons ci ratio: 1.184569e-02	ci left: 5.744185e-01	ci right 5.812759e-01	k: 46228	n:80000
KS ci ratio: 9.631048e-02	ci left: 1.930953e-02	ci right 2.127547e-02	k: 1622	n:80000
ZNF70   80000 perm   18 sec   (4564 perm/sec)   p_kst 2.027500e-02   p_cons 5.778500e-01   p_joint 8.255000e-02

Outputting figure to mutsig2_images.part000000000199/ZNF70.3_1345_80000_0.020275_0.57785_0.08255.png
                gene_name: ZNF70
               theta_stop: 0.096 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.58 
      ci_cons_bounds_left: 0.57 
     ci_cons_bounds_right: 0.58 
                  p_joint: 0.083 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.084 

Current progress: 56 percent done.
ZNF710
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.395411e-02	ci left: 7.192638e-01	ci right 7.368032e-01	k: 7281	n:10000
KS ci ratio: 1.700177e-02	ci left: 8.343964e-01	ci right 8.488040e-01	k: 8417	n:10000
ZNF710   10000 perm   2 sec   (5790 perm/sec)   p_kst 8.417000e-01   p_cons 7.281000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF710.3_2011_10000_0.8417_0.7281_1.png
                gene_name: ZNF710
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 58 percent done.
ZNF713
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.124744e-02	ci left: 9.186317e-01	ci right 9.291198e-01	k: 9240	n:10000
Cons ci ratio: 1.999184e-02	ci left: 7.855326e-01	ci right 8.014960e-01	k: 7936	n:10000
KS ci ratio: 2.909827e-02	ci left: 6.352285e-01	ci right 6.540872e-01	k: 6447	n:10000
ZNF713   10000 perm   2 sec   (6048 perm/sec)   p_kst 6.447000e-01   p_cons 7.936000e-01   p_joint 9.240000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF713.3_1309_10000_0.6447_0.7936_0.924.png
                gene_name: ZNF713
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.64 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.79 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.92 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 59 percent done.
ZNF74
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.659211e-02	ci left: 5.244645e-01	ci right 5.441155e-01	k: 5343	n:10000
KS ci ratio: 4.933479e-03	ci left: 9.818827e-01	ci right 9.868293e-01	k: 9845	n:10000
ZNF74   10000 perm   2 sec   (5337 perm/sec)   p_kst 9.845000e-01   p_cons 5.343000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF74.3_1955_10000_0.9845_0.5343_1.png
                gene_name: ZNF74
               theta_stop: 0.037 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.98 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.53 
      ci_cons_bounds_left: 0.52 
     ci_cons_bounds_right: 0.54 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 61 percent done.
ZNF75A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.704638e-02	ci left: 8.336838e-01	ci right 8.481171e-01	k: 8410	n:10000
KS ci ratio: 2.842204e-02	ci left: 6.459913e-01	ci right 6.647181e-01	k: 6554	n:10000
ZNF75A   10000 perm   2 sec   (5836 perm/sec)   p_kst 6.554000e-01   p_cons 8.410000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF75A.3_903_10000_0.6554_0.841_1.png
                gene_name: ZNF75A
               theta_stop: 0.028 
                    nperm: 10000 
                     p_ks: 0.66 
        ci_ks_bounds_left: 0.65 
       ci_ks_bounds_right: 0.66 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.83 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 62 percent done.
ZNF763
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.120649e-02	ci left: 7.652685e-01	ci right 7.817719e-01	k: 7736	n:10000
Cons ci ratio: 4.811095e-02	ci left: 3.892832e-01	ci right 4.085757e-01	k: 3989	n:10000
KS ci ratio: 4.208421e-03	ci left: 9.864298e-01	ci right 9.906784e-01	k: 9887	n:10000
ZNF763   10000 perm   2 sec   (6167 perm/sec)   p_kst 9.887000e-01   p_cons 3.989000e-01   p_joint 7.736000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF763.3_1210_10000_0.9887_0.3989_0.7736.png
                gene_name: ZNF763
               theta_stop: 0.048 
                    nperm: 10000 
                     p_ks: 0.99 
        ci_ks_bounds_left: 0.99 
       ci_ks_bounds_right: 0.99 
                   p_cons: 0.40 
      ci_cons_bounds_left: 0.39 
     ci_cons_bounds_right: 0.41 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 64 percent done.
ZNF766
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.225205e-02	ci left: 4.526899e-01	ci right 4.723320e-01	k: 4625	n:10000
Cons ci ratio: 1.936165e-02	ci left: 7.959800e-01	ci right 8.116426e-01	k: 8039	n:10000
KS ci ratio: 9.541650e-02	ci left: 1.374671e-01	ci right 1.513407e-01	k: 1443	n:10000
ZNF766   10000 perm   2 sec   (6141 perm/sec)   p_kst 1.443000e-01   p_cons 8.039000e-01   p_joint 4.625000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF766.3_1423_10000_0.1443_0.8039_0.4625.png
                gene_name: ZNF766
               theta_stop: 0.095 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.80 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.46 
     ci_joint_bounds_left: 0.45 
    ci_joint_bounds_right: 0.47 

Current progress: 65 percent done.
ZNF77
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.055197e-01	ci left: 3.148396e-02	ci right 3.879009e-02	k: 350	n:10000
Cons ci ratio: 3.912365e-02	ci left: 4.910511e-01	ci right 5.107483e-01	k: 5009	n:10000
KS ci ratio: 2.554752e-01	ci left: 2.005779e-02	ci right 2.602453e-02	k: 229	n:10000
ZNF77   10000 perm   2 sec   (5742 perm/sec)   p_kst 2.290000e-02   p_cons 5.009000e-01   p_joint 3.500000e-02

Joint ci ratio: 9.576406e-02	ci left: 7.358645e-02	ci right 8.103699e-02	k: 1545	n:20000
Cons ci ratio: 2.842676e-02	ci left: 4.804000e-01	ci right 4.943037e-01	k: 9747	n:20000
KS ci ratio: 1.841662e-01	ci left: 2.010730e-02	ci right 2.423325e-02	k: 442	n:20000
ZNF77   20000 perm   4 sec   (5143 perm/sec)   p_kst 2.210000e-02   p_cons 4.873500e-01   p_joint 7.725000e-02

Joint ci ratio: 7.228873e-02	ci left: 8.603062e-02	ci right 9.251584e-02	k: 2677	n:30000
Cons ci ratio: 2.237597e-02	ci left: 4.999921e-01	ci right 5.113401e-01	k: 15170	n:30000
KS ci ratio: 1.477226e-01	ci left: 2.123698e-02	ci right 2.465627e-02	k: 687	n:30000
ZNF77   30000 perm   6 sec   (4882 perm/sec)   p_kst 2.290000e-02   p_cons 5.056667e-01   p_joint 8.923333e-02

Joint ci ratio: 6.251441e-02	ci left: 8.669523e-02	ci right 9.231453e-02	k: 3579	n:40000
Cons ci ratio: 1.940619e-02	ci left: 5.000376e-01	ci right 5.098617e-01	k: 20198	n:40000
KS ci ratio: 1.273179e-01	ci left: 2.167428e-02	ci right 2.464550e-02	k: 925	n:40000
ZNF77   40000 perm   8 sec   (4732 perm/sec)   p_kst 2.312500e-02   p_cons 5.049500e-01   p_joint 8.947500e-02

Joint ci ratio: 5.700576e-02	ci left: 8.393170e-02	ci right 8.887645e-02	k: 4319	n:50000
Cons ci ratio: 1.740866e-02	ci left: 4.990874e-01	ci right 5.078722e-01	k: 25174	n:50000
KS ci ratio: 1.147166e-01	ci left: 2.150942e-02	ci right 2.414639e-02	k: 1140	n:50000
ZNF77   50000 perm   11 sec   (4635 perm/sec)   p_kst 2.280000e-02   p_cons 5.034800e-01   p_joint 8.638000e-02

Joint ci ratio: 5.029559e-02	ci left: 8.961640e-02	ci right 9.425649e-02	k: 5515	n:60000
Cons ci ratio: 1.587913e-02	ci left: 4.998743e-01	ci right 5.078920e-01	k: 30233	n:60000
KS ci ratio: 1.045343e-01	ci left: 2.170164e-02	ci right 2.411148e-02	k: 1373	n:60000
ZNF77   60000 perm   13 sec   (4464 perm/sec)   p_kst 2.288333e-02   p_cons 5.038833e-01   p_joint 9.191667e-02

Joint ci ratio: 4.645087e-02	ci left: 9.019383e-02	ci right 9.449717e-02	k: 6463	n:70000
Cons ci ratio: 1.469448e-02	ci left: 5.004032e-01	ci right 5.078251e-01	k: 35288	n:70000
KS ci ratio: 9.616784e-02	ci left: 2.206957e-02	ci right 2.431305e-02	k: 1622	n:70000
ZNF77   70000 perm   16 sec   (4377 perm/sec)   p_kst 2.317143e-02   p_cons 5.041143e-01   p_joint 9.232857e-02

Outputting figure to mutsig2_images.part000000000199/ZNF77.3_1654_70000_0.023171_0.50411_0.092329.png
                gene_name: ZNF77
               theta_stop: 0.096 
                    nperm: 70000 
                     p_ks: 0.023 
        ci_ks_bounds_left: 0.022 
       ci_ks_bounds_right: 0.024 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.092 
     ci_joint_bounds_left: 0.090 
    ci_joint_bounds_right: 0.094 

Current progress: 67 percent done.
ZNF772
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.824960e-01	ci left: 4.006355e-02	ci right 4.820470e-02	k: 440	n:10000
Cons ci ratio: 2.560455e-01	ci left: 1.996408e-02	ci right 2.591832e-02	k: 228	n:10000
KS ci ratio: 6.561992e-02	ci left: 2.542921e-01	ci right 2.716462e-01	k: 2629	n:10000
ZNF772   10000 perm   2 sec   (6002 perm/sec)   p_kst 2.629000e-01   p_cons 2.280000e-02   p_joint 4.400000e-02

Joint ci ratio: 1.128455e-01	ci left: 5.368046e-02	ci right 6.014911e-02	k: 1137	n:20000
Cons ci ratio: 1.779009e-01	ci left: 2.158850e-02	ci right 2.585152e-02	k: 473	n:20000
KS ci ratio: 4.543888e-02	ci left: 2.649975e-01	ci right 2.773691e-01	k: 5423	n:20000
ZNF772   20000 perm   4 sec   (5368 perm/sec)   p_kst 2.711500e-01   p_cons 2.365000e-02   p_joint 5.685000e-02

Joint ci ratio: 7.857782e-02	ci left: 7.358219e-02	ci right 7.963344e-02	k: 2297	n:30000
Cons ci ratio: 1.466356e-01	ci left: 2.155829e-02	ci right 2.500155e-02	k: 697	n:30000
KS ci ratio: 3.719485e-02	ci left: 2.651477e-01	ci right 2.752302e-01	k: 8105	n:30000
ZNF772   30000 perm   6 sec   (5119 perm/sec)   p_kst 2.701667e-01   p_cons 2.323333e-02   p_joint 7.656667e-02

Joint ci ratio: 6.901893e-02	ci left: 7.204360e-02	ci right 7.721836e-02	k: 2984	n:40000
Cons ci ratio: 1.278845e-01	ci left: 2.148053e-02	ci right 2.443929e-02	k: 917	n:40000
KS ci ratio: 3.219539e-02	ci left: 2.660267e-01	ci right 2.747567e-01	k: 10815	n:40000
ZNF772   40000 perm   8 sec   (4921 perm/sec)   p_kst 2.703750e-01   p_cons 2.292500e-02   p_joint 7.460000e-02

Joint ci ratio: 5.810956e-02	ci left: 8.099077e-02	ci right 8.585772e-02	k: 4170	n:50000
Cons ci ratio: 1.151303e-01	ci left: 2.135392e-02	ci right 2.398191e-02	k: 1132	n:50000
KS ci ratio: 2.873527e-02	ci left: 2.673264e-01	ci right 2.751401e-01	k: 13561	n:50000
ZNF772   50000 perm   10 sec   (4775 perm/sec)   p_kst 2.712200e-01   p_cons 2.264000e-02   p_joint 8.340000e-02

Joint ci ratio: 4.744068e-02	ci left: 9.973773e-02	ci right 1.046008e-01	k: 6129	n:60000
Cons ci ratio: 1.054810e-01	ci left: 2.131192e-02	ci right 2.370124e-02	k: 1349	n:60000
KS ci ratio: 2.624422e-02	ci left: 2.674795e-01	ci right 2.746093e-01	k: 16262	n:60000
ZNF772   60000 perm   13 sec   (4691 perm/sec)   p_kst 2.710333e-01   p_cons 2.248333e-02   p_joint 1.021500e-01

Joint ci ratio: 3.990395e-02	ci left: 1.187343e-01	ci right 1.235829e-01	k: 8480	n:70000
Cons ci ratio: 9.702813e-02	ci left: 2.167902e-02	ci right 2.390363e-02	k: 1594	n:70000
KS ci ratio: 2.438602e-02	ci left: 2.663152e-01	ci right 2.729039e-01	k: 18872	n:70000
ZNF772   70000 perm   15 sec   (4603 perm/sec)   p_kst 2.696000e-01   p_cons 2.277143e-02   p_joint 1.211429e-01

Outputting figure to mutsig2_images.part000000000199/ZNF772.3_1490_70000_0.2696_0.022771_0.12114.png
                gene_name: ZNF772
               theta_stop: 0.097 
                    nperm: 70000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.023 
      ci_cons_bounds_left: 0.022 
     ci_cons_bounds_right: 0.024 
                  p_joint: 0.12 
     ci_joint_bounds_left: 0.12 
    ci_joint_bounds_right: 0.12 

Current progress: 68 percent done.
ZNF774
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.865137e-01	ci left: 3.834345e-02	ci right 4.632594e-02	k: 422	n:10000
Cons ci ratio: 1.197356e-01	ci left: 9.097541e-02	ci right 1.026607e-01	k: 967	n:10000
KS ci ratio: 1.814227e-01	ci left: 4.054168e-02	ci right 4.872625e-02	k: 445	n:10000
ZNF774   10000 perm   2 sec   (6304 perm/sec)   p_kst 4.450000e-02   p_cons 9.670000e-02   p_joint 4.220000e-02

Joint ci ratio: 1.102002e-01	ci left: 5.621205e-02	ci right 6.281674e-02	k: 1189	n:20000
Cons ci ratio: 8.413924e-02	ci left: 9.376599e-02	ci right 1.020513e-01	k: 1957	n:20000
KS ci ratio: 1.309216e-01	ci left: 4.008492e-02	ci right 4.574894e-02	k: 857	n:20000
ZNF774   20000 perm   4 sec   (5503 perm/sec)   p_kst 4.285000e-02   p_cons 9.785000e-02   p_joint 5.945000e-02

Joint ci ratio: 7.342332e-02	ci left: 8.357201e-02	ci right 8.997494e-02	k: 2602	n:30000
Cons ci ratio: 6.948942e-02	ci left: 9.255776e-02	ci right 9.925406e-02	k: 2876	n:30000
KS ci ratio: 1.063807e-01	ci left: 4.099204e-02	ci right 4.563026e-02	k: 1298	n:30000
ZNF774   30000 perm   6 sec   (5187 perm/sec)   p_kst 4.326667e-02   p_cons 9.586667e-02   p_joint 8.673333e-02

Joint ci ratio: 1.200213e-01	ci left: 2.441395e-02	ci right 2.755538e-02	k: 1038	n:40000
Cons ci ratio: 6.230439e-02	ci left: 8.723745e-02	ci right 9.287223e-02	k: 3601	n:40000
KS ci ratio: 9.268951e-02	ci left: 4.081277e-02	ci right 4.480395e-02	k: 1711	n:40000
ZNF774   40000 perm   8 sec   (4991 perm/sec)   p_kst 4.277500e-02   p_cons 9.002500e-02   p_joint 2.595000e-02

Joint ci ratio: 1.050779e-01	ci left: 2.565528e-02	ci right 2.851998e-02	k: 1353	n:50000
Cons ci ratio: 5.567590e-02	ci left: 8.768314e-02	ci right 9.272456e-02	k: 4509	n:50000
KS ci ratio: 8.296498e-02	ci left: 4.096404e-02	ci right 4.452929e-02	k: 2136	n:50000
ZNF774   50000 perm   10 sec   (4853 perm/sec)   p_kst 4.272000e-02   p_cons 9.018000e-02   p_joint 2.706000e-02

Joint ci ratio: 7.310139e-02	ci left: 4.405906e-02	ci right 4.741839e-02	k: 2743	n:60000
Cons ci ratio: 4.945587e-02	ci left: 9.243439e-02	ci right 9.713822e-02	k: 5686	n:60000
KS ci ratio: 7.507218e-02	ci left: 4.183253e-02	ci right 4.511181e-02	k: 2607	n:60000
ZNF774   60000 perm   13 sec   (4736 perm/sec)   p_kst 4.345000e-02   p_cons 9.476667e-02   p_joint 4.571667e-02

Outputting figure to mutsig2_images.part000000000199/ZNF774.3_1464_60000_0.04345_0.094767_0.045717.png
                gene_name: ZNF774
               theta_stop: 0.075 
                    nperm: 60000 
                     p_ks: 0.043 
        ci_ks_bounds_left: 0.042 
       ci_ks_bounds_right: 0.045 
                   p_cons: 0.095 
      ci_cons_bounds_left: 0.092 
     ci_cons_bounds_right: 0.097 
                  p_joint: 0.046 
     ci_joint_bounds_left: 0.044 
    ci_joint_bounds_right: 0.047 

Current progress: 70 percent done.
ZNF776
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.760919e-02	ci left: 1.594429e-01	ci right 1.741517e-01	k: 1667	n:10000
Cons ci ratio: 7.281323e-02	ci left: 2.164518e-01	ci right 2.329089e-01	k: 2246	n:10000
KS ci ratio: 9.237174e-02	ci left: 1.455058e-01	ci right 1.596972e-01	k: 1525	n:10000
ZNF776   10000 perm   2 sec   (5890 perm/sec)   p_kst 1.525000e-01   p_cons 2.246000e-01   p_joint 1.667000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF776.3_1569_10000_0.1525_0.2246_0.1667.png
                gene_name: ZNF776
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.17 
     ci_joint_bounds_left: 0.16 
    ci_joint_bounds_right: 0.17 

Current progress: 71 percent done.
ZNF649
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.184997e-02	ci left: 3.541627e-01	ci right 3.731168e-01	k: 3636	n:10000
Cons ci ratio: 5.585553e-02	ci left: 3.206853e-01	ci right 3.392138e-01	k: 3299	n:10000
KS ci ratio: 5.382235e-02	ci left: 3.371692e-01	ci right 3.559202e-01	k: 3465	n:10000
ZNF649   10000 perm   2 sec   (6150 perm/sec)   p_kst 3.465000e-01   p_cons 3.299000e-01   p_joint 3.636000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF649.2_1534_10000_0.3465_0.3299_0.3636.png
                gene_name: ZNF649
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.36 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.37 

Current progress: 73 percent done.
ZNF653
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.065741e-02	ci left: 2.855770e-01	ci right 3.035428e-01	k: 2945	n:10000
Cons ci ratio: 3.659211e-02	ci left: 5.244645e-01	ci right 5.441155e-01	k: 5343	n:10000
KS ci ratio: 1.162440e-01	ci left: 9.613473e-02	ci right 1.080982e-01	k: 1020	n:10000
ZNF653   10000 perm   2 sec   (6301 perm/sec)   p_kst 1.020000e-01   p_cons 5.343000e-01   p_joint 2.945000e-01

Joint ci ratio: 3.551148e-02	ci left: 3.718211e-01	ci right 3.853143e-01	k: 7571	n:20000
Cons ci ratio: 2.688105e-02	ci left: 5.083469e-01	ci right 5.222486e-01	k: 10306	n:20000
KS ci ratio: 8.376039e-02	ci left: 9.455091e-02	ci right 1.028662e-01	k: 1973	n:20000
ZNF653   20000 perm   4 sec   (5525 perm/sec)   p_kst 9.865000e-02   p_cons 5.153000e-01   p_joint 3.785500e-01

Outputting figure to mutsig2_images.part000000000199/ZNF653.2_1884_20000_0.09865_0.5153_0.37855.png
                gene_name: ZNF653
               theta_stop: 0.084 
                    nperm: 20000 
                     p_ks: 0.099 
        ci_ks_bounds_left: 0.095 
       ci_ks_bounds_right: 0.10 
                   p_cons: 0.52 
      ci_cons_bounds_left: 0.51 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.38 
     ci_joint_bounds_left: 0.37 
    ci_joint_bounds_right: 0.39 

Current progress: 74 percent done.
ZNF655
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.684082e-02	ci left: 4.021307e-01	ci right 4.215207e-01	k: 4118	n:10000
Cons ci ratio: 5.372743e-02	ci left: 3.379640e-01	ci right 3.567250e-01	k: 3473	n:10000
KS ci ratio: 3.338807e-02	ci left: 5.697529e-01	ci right 5.892008e-01	k: 5795	n:10000
ZNF655   10000 perm   2 sec   (5839 perm/sec)   p_kst 5.795000e-01   p_cons 3.473000e-01   p_joint 4.118000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF655.2_2015_10000_0.5795_0.3473_0.4118.png
                gene_name: ZNF655
               theta_stop: 0.054 
                    nperm: 10000 
                     p_ks: 0.58 
        ci_ks_bounds_left: 0.57 
       ci_ks_bounds_right: 0.59 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.34 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.41 
     ci_joint_bounds_left: 0.40 
    ci_joint_bounds_right: 0.42 

Current progress: 76 percent done.
ZNF669
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.528310e-02	ci left: 2.562705e-01	ci right 2.736666e-01	k: 2649	n:10000
Cons ci ratio: 1.455778e-01	ci left: 6.265923e-02	ci right 7.259445e-02	k: 675	n:10000
KS ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
ZNF669   10000 perm   2 sec   (6417 perm/sec)   p_kst 4.564000e-01   p_cons 6.750000e-02   p_joint 2.649000e-01

Joint ci ratio: 5.672470e-02	ci left: 1.872537e-01	ci right 1.982358e-01	k: 3854	n:20000
Cons ci ratio: 1.032282e-01	ci left: 6.376824e-02	ci right 7.075821e-02	k: 1344	n:20000
KS ci ratio: 3.036136e-02	ci left: 4.476312e-01	ci right 4.614820e-01	k: 9091	n:20000
ZNF669   20000 perm   4 sec   (5611 perm/sec)   p_kst 4.545500e-01   p_cons 6.720000e-02   p_joint 1.927000e-01

Joint ci ratio: 4.696830e-02	ci left: 1.839888e-01	ci right 1.928716e-01	k: 5652	n:30000
Cons ci ratio: 8.407404e-02	ci left: 6.471901e-02	ci right 7.043175e-02	k: 2026	n:30000
KS ci ratio: 2.466686e-02	ci left: 4.513841e-01	ci right 4.626909e-01	k: 13711	n:30000
ZNF669   30000 perm   6 sec   (5356 perm/sec)   p_kst 4.570333e-01   p_cons 6.753333e-02   p_joint 1.884000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF669.2_1411_30000_0.45703_0.067533_0.1884.png
                gene_name: ZNF669
               theta_stop: 0.084 
                    nperm: 30000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.068 
      ci_cons_bounds_left: 0.065 
     ci_cons_bounds_right: 0.070 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.19 

Current progress: 77 percent done.
ZNF674
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.894111e-02	ci left: 1.899330e-01	ci right 2.056434e-01	k: 1977	n:10000
Cons ci ratio: 1.440974e-01	ci left: 6.391519e-02	ci right 7.393770e-02	k: 688	n:10000
KS ci ratio: 5.385802e-02	ci left: 3.368712e-01	ci right 3.556184e-01	k: 3462	n:10000
ZNF674   10000 perm   2 sec   (6476 perm/sec)   p_kst 3.462000e-01   p_cons 6.880000e-02   p_joint 1.977000e-01

Joint ci ratio: 7.967941e-02	ci left: 1.036324e-01	ci right 1.122820e-01	k: 2158	n:20000
Cons ci ratio: 1.016569e-01	ci left: 6.567166e-02	ci right 7.275421e-02	k: 1383	n:20000
KS ci ratio: 3.780737e-02	ci left: 3.429389e-01	ci right 3.562049e-01	k: 6991	n:20000
ZNF674   20000 perm   4 sec   (5677 perm/sec)   p_kst 3.495500e-01   p_cons 6.915000e-02   p_joint 1.079000e-01

Joint ci ratio: 6.709082e-02	ci left: 9.872860e-02	ci right 1.056153e-01	k: 3064	n:30000
Cons ci ratio: 8.300312e-02	ci left: 6.632057e-02	ci right 7.209653e-02	k: 2075	n:30000
KS ci ratio: 3.104686e-02	ci left: 3.415786e-01	ci right 3.523844e-01	k: 10409	n:30000
ZNF674   30000 perm   6 sec   (5202 perm/sec)   p_kst 3.469667e-01   p_cons 6.916667e-02   p_joint 1.021333e-01

Outputting figure to mutsig2_images.part000000000199/ZNF674.2_1762_30000_0.34697_0.069167_0.10213.png
                gene_name: ZNF674
               theta_stop: 0.083 
                    nperm: 30000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.069 
      ci_cons_bounds_left: 0.066 
     ci_cons_bounds_right: 0.072 
                  p_joint: 0.10 
     ci_joint_bounds_left: 0.099 
    ci_joint_bounds_right: 0.11 

Current progress: 79 percent done.
ZNF681
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.458342e-02	ci left: 1.692694e-01	ci right 1.843194e-01	k: 1767	n:10000
Cons ci ratio: 5.397717e-02	ci left: 3.358779e-01	ci right 3.546124e-01	k: 3452	n:10000
KS ci ratio: 1.103741e-01	ci left: 1.057850e-01	ci right 1.182420e-01	k: 1119	n:10000
ZNF681   10000 perm   2 sec   (5657 perm/sec)   p_kst 1.119000e-01   p_cons 3.452000e-01   p_joint 1.767000e-01

Joint ci ratio: 5.980009e-02	ci left: 1.715350e-01	ci right 1.821591e-01	k: 3536	n:20000
Cons ci ratio: 3.758809e-02	ci left: 3.455770e-01	ci right 3.588660e-01	k: 7044	n:20000
KS ci ratio: 7.868207e-02	ci left: 1.060395e-01	ci right 1.147742e-01	k: 2207	n:20000
ZNF681   20000 perm   4 sec   (4930 perm/sec)   p_kst 1.103500e-01   p_cons 3.522000e-01   p_joint 1.768000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF681.2_1954_20000_0.11035_0.3522_0.1768.png
                gene_name: ZNF681
               theta_stop: 0.079 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.11 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.35 
      ci_cons_bounds_left: 0.35 
     ci_cons_bounds_right: 0.36 
                  p_joint: 0.18 
     ci_joint_bounds_left: 0.17 
    ci_joint_bounds_right: 0.18 

Current progress: 80 percent done.
ZNF689
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.289056e-03	ci left: 9.953687e-01	ci right 9.977274e-01	k: 9967	n:10000
KS ci ratio: 5.510623e-02	ci left: 3.266419e-01	ci right 3.452538e-01	k: 3359	n:10000
ZNF689   10000 perm   2 sec   (6404 perm/sec)   p_kst 3.359000e-01   p_cons 9.967000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF689.2_1515_10000_0.3359_0.9967_1.png
                gene_name: ZNF689
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 1.00 
      ci_cons_bounds_left: 1.00 
     ci_cons_bounds_right: 1.00 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 82 percent done.
ZNF691
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.293816e-02	ci left: 4.447053e-01	ci right 4.643212e-01	k: 4545	n:10000
Cons ci ratio: 2.827121e-02	ci left: 6.484061e-01	ci right 6.671019e-01	k: 6578	n:10000
KS ci ratio: 6.350447e-02	ci left: 2.670569e-01	ci right 2.846738e-01	k: 2758	n:10000
ZNF691   10000 perm   2 sec   (6125 perm/sec)   p_kst 2.758000e-01   p_cons 6.578000e-01   p_joint 4.545000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF691.2_859_10000_0.2758_0.6578_0.4545.png
                gene_name: ZNF691
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.28 
        ci_ks_bounds_left: 0.27 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.66 
      ci_cons_bounds_left: 0.65 
     ci_cons_bounds_right: 0.67 
                  p_joint: 0.45 
     ci_joint_bounds_left: 0.44 
    ci_joint_bounds_right: 0.46 

Current progress: 83 percent done.
ZNF701
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.115922e-02	ci left: 9.197660e-01	ci right 9.301849e-01	k: 9251	n:10000
Cons ci ratio: 4.174575e-02	ci left: 4.586800e-01	ci right 4.783383e-01	k: 4685	n:10000
KS ci ratio: 4.501416e-02	ci left: 4.214646e-01	ci right 4.409755e-01	k: 4312	n:10000
ZNF701   10000 perm   2 sec   (6314 perm/sec)   p_kst 4.312000e-01   p_cons 4.685000e-01   p_joint 9.251000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF701.2_1612_10000_0.4312_0.4685_0.9251.png
                gene_name: ZNF701
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.43 
        ci_ks_bounds_left: 0.42 
       ci_ks_bounds_right: 0.44 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.93 
     ci_joint_bounds_left: 0.92 
    ci_joint_bounds_right: 0.93 

Current progress: 85 percent done.
ZNF705A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.635411e-01	ci left: 5.460790e-03	ci right 8.835916e-03	k: 70	n:10000
Cons ci ratio: 6.380780e-02	ci left: 2.651762e-01	ci right 2.827556e-01	k: 2739	n:10000
KS ci ratio: 4.284655e-01	ci left: 6.526864e-03	ci right 1.016828e-02	k: 82	n:10000
ZNF705A   10000 perm   1 sec   (6769 perm/sec)   p_kst 8.200000e-03   p_cons 2.739000e-01   p_joint 7.000000e-03

Joint ci ratio: 2.520380e-01	ci left: 1.044346e-02	ci right 1.350089e-02	k: 238	n:20000
Cons ci ratio: 4.546763e-02	ci left: 2.647494e-01	ci right 2.771173e-01	k: 5418	n:20000
KS ci ratio: 3.011543e-01	ci left: 7.135763e-03	ci right 9.710225e-03	k: 167	n:20000
ZNF705A   20000 perm   3 sec   (5757 perm/sec)   p_kst 8.350000e-03   p_cons 2.709000e-01   p_joint 1.190000e-02

Joint ci ratio: 9.984660e-02	ci left: 4.642167e-02	ci right 5.133284e-02	k: 1465	n:30000
Cons ci ratio: 3.477795e-02	ci left: 2.922968e-01	ci right 3.026757e-01	k: 8924	n:30000
KS ci ratio: 2.499256e-01	ci left: 7.116901e-03	ci right 9.180058e-03	k: 243	n:30000
ZNF705A   30000 perm   6 sec   (5328 perm/sec)   p_kst 8.100000e-03   p_cons 2.974667e-01   p_joint 4.883333e-02

Joint ci ratio: 7.705018e-02	ci left: 5.842856e-02	ci right 6.313546e-02	k: 2430	n:40000
Cons ci ratio: 3.017997e-02	ci left: 2.921511e-01	ci right 3.011284e-01	k: 11865	n:40000
KS ci ratio: 2.182537e-01	ci left: 7.126712e-03	ci right 8.895833e-03	k: 319	n:40000
ZNF705A   40000 perm   8 sec   (5199 perm/sec)   p_kst 7.975000e-03   p_cons 2.966250e-01   p_joint 6.075000e-02

Joint ci ratio: 8.100465e-02	ci left: 4.292481e-02	ci right 4.656829e-02	k: 2236	n:50000
Cons ci ratio: 2.705667e-02	ci left: 2.916620e-01	ci right 2.996817e-01	k: 14783	n:50000
KS ci ratio: 1.939940e-01	ci left: 7.313959e-03	ci right 8.903947e-03	k: 404	n:50000
ZNF705A   50000 perm   10 sec   (4867 perm/sec)   p_kst 8.080000e-03   p_cons 2.956600e-01   p_joint 4.472000e-02

Joint ci ratio: 8.253514e-02	ci left: 3.473589e-02	ci right 3.774252e-02	k: 2173	n:60000
Cons ci ratio: 2.471290e-02	ci left: 2.917844e-01	ci right 2.991021e-01	k: 17726	n:60000
KS ci ratio: 1.774602e-01	ci left: 7.350527e-03	ci right 8.797663e-03	k: 483	n:60000
ZNF705A   60000 perm   13 sec   (4772 perm/sec)   p_kst 8.050000e-03   p_cons 2.954333e-01   p_joint 3.621667e-02

Joint ci ratio: 6.779354e-02	ci left: 4.403819e-02	ci right 4.714248e-02	k: 3190	n:70000
Cons ci ratio: 2.292020e-02	ci left: 2.913241e-01	ci right 2.980930e-01	k: 20629	n:70000
KS ci ratio: 1.629443e-01	ci left: 7.531534e-03	ci right 8.881138e-03	k: 573	n:70000
ZNF705A   70000 perm   15 sec   (4589 perm/sec)   p_kst 8.185714e-03   p_cons 2.947000e-01   p_joint 4.557143e-02

Joint ci ratio: 6.348679e-02	ci left: 4.404153e-02	ci right 4.694154e-02	k: 3638	n:80000
Cons ci ratio: 2.137121e-02	ci left: 2.928753e-01	ci right 2.992145e-01	k: 23683	n:80000
KS ci ratio: 1.524206e-01	ci left: 7.574693e-03	ci right 8.836363e-03	k: 655	n:80000
ZNF705A   80000 perm   18 sec   (4532 perm/sec)   p_kst 8.187500e-03   p_cons 2.960375e-01   p_joint 4.547500e-02

Joint ci ratio: 6.385611e-02	ci left: 3.890409e-02	ci right 4.148120e-02	k: 3616	n:90000
Cons ci ratio: 2.009138e-02	ci left: 2.942484e-01	ci right 3.002313e-01	k: 26751	n:90000
KS ci ratio: 1.448961e-01	ci left: 7.481892e-03	ci right 8.661257e-03	k: 725	n:90000
ZNF705A   90000 perm   20 sec   (4480 perm/sec)   p_kst 8.055556e-03   p_cons 2.972333e-01   p_joint 4.017778e-02

Joint ci ratio: 6.977098e-02	ci left: 2.953132e-02	ci right 3.167602e-02	k: 3059	n:100000
Cons ci ratio: 1.903823e-02	ci left: 2.948869e-01	ci right 3.005649e-01	k: 29772	n:100000
KS ci ratio: 1.380368e-01	ci left: 7.447511e-03	ci right 8.561310e-03	k: 799	n:100000
ZNF705A   100000 perm   23 sec   (4425 perm/sec)   p_kst 7.990000e-03   p_cons 2.977200e-01   p_joint 3.059000e-02

Joint ci ratio: 6.738593e-02	ci left: 2.883881e-02	ci right 3.085881e-02	k: 3282	n:110000
Cons ci ratio: 1.816815e-02	ci left: 2.946542e-01	ci right 3.000656e-01	k: 32709	n:110000
KS ci ratio: 1.334599e-01	ci left: 7.262220e-03	ci right 8.309436e-03	k: 855	n:110000
ZNF705A   110000 perm   25 sec   (4369 perm/sec)   p_kst 7.772727e-03   p_cons 2.973545e-01   p_joint 2.983636e-02

Joint ci ratio: 6.386259e-02	ci left: 2.946863e-02	ci right 3.142082e-02	k: 3652	n:120000
Cons ci ratio: 1.739872e-02	ci left: 2.946731e-01	ci right 2.998533e-01	k: 35671	n:120000
KS ci ratio: 1.268787e-01	ci left: 7.390715e-03	ci right 8.399951e-03	k: 946	n:120000
ZNF705A   120000 perm   28 sec   (4299 perm/sec)   p_kst 7.883333e-03   p_cons 2.972583e-01   p_joint 3.043333e-02

Joint ci ratio: 6.056784e-02	ci left: 3.026912e-02	ci right 3.216725e-02	k: 4057	n:130000
Cons ci ratio: 1.672806e-02	ci left: 2.944784e-01	ci right 2.994537e-01	k: 38605	n:130000
KS ci ratio: 1.213608e-01	ci left: 7.478130e-03	ci right 8.451703e-03	k: 1034	n:130000
ZNF705A   130000 perm   31 sec   (4241 perm/sec)   p_kst 7.953846e-03   p_cons 2.969615e-01   p_joint 3.120769e-02

Joint ci ratio: 5.879764e-02	ci left: 2.986591e-02	ci right 3.168216e-02	k: 4307	n:140000
Cons ci ratio: 1.610515e-02	ci left: 2.949420e-01	ci right 2.997378e-01	k: 41627	n:140000
KS ci ratio: 1.166625e-01	ci left: 7.533062e-03	ci right 8.473201e-03	k: 1119	n:140000
ZNF705A   140000 perm   34 sec   (4179 perm/sec)   p_kst 7.992857e-03   p_cons 2.973357e-01   p_joint 3.076429e-02

Joint ci ratio: 5.682117e-02	ci left: 2.987880e-02	ci right 3.163274e-02	k: 4612	n:150000
Cons ci ratio: 1.556040e-02	ci left: 2.949876e-01	ci right 2.996203e-01	k: 44595	n:150000
KS ci ratio: 1.126122e-01	ci left: 7.561857e-03	ci right 8.470648e-03	k: 1201	n:150000
ZNF705A   150000 perm   36 sec   (4120 perm/sec)   p_kst 8.006667e-03   p_cons 2.973000e-01   p_joint 3.074667e-02

Joint ci ratio: 4.755122e-02	ci left: 3.977408e-02	ci right 4.171760e-02	k: 6518	n:160000
Cons ci ratio: 1.505910e-02	ci left: 2.952605e-01	ci right 2.997468e-01	k: 47600	n:160000
KS ci ratio: 1.084889e-01	ci left: 7.654441e-03	ci right 8.538523e-03	k: 1294	n:160000
ZNF705A   160000 perm   39 sec   (4064 perm/sec)   p_kst 8.087500e-03   p_cons 2.975000e-01   p_joint 4.073750e-02

Joint ci ratio: 4.615035e-02	ci left: 3.977143e-02	ci right 4.165604e-02	k: 6920	n:170000
Cons ci ratio: 1.462472e-02	ci left: 2.948930e-01	ci right 2.992433e-01	k: 50501	n:170000
KS ci ratio: 1.052087e-01	ci left: 7.673647e-03	ci right 8.531491e-03	k: 1376	n:170000
ZNF705A   170000 perm   42 sec   (4012 perm/sec)   p_kst 8.094118e-03   p_cons 2.970647e-01   p_joint 4.070588e-02

Joint ci ratio: 4.483452e-02	ci left: 3.982478e-02	ci right 4.165672e-02	k: 7332	n:180000
Cons ci ratio: 1.422794e-02	ci left: 2.945071e-01	ci right 2.987328e-01	k: 53391	n:180000
KS ci ratio: 1.022799e-01	ci left: 7.680247e-03	ci right 8.513491e-03	k: 1456	n:180000
ZNF705A   180000 perm   45 sec   (3960 perm/sec)   p_kst 8.088889e-03   p_cons 2.966167e-01   p_joint 4.073333e-02

Joint ci ratio: 4.365457e-02	ci left: 3.982111e-02	ci right 4.160346e-02	k: 7734	n:190000
Cons ci ratio: 1.383977e-02	ci left: 2.948251e-01	ci right 2.989390e-01	k: 56407	n:190000
KS ci ratio: 9.968090e-02	ci left: 7.671049e-03	ci right 8.480910e-03	k: 1533	n:190000
ZNF705A   190000 perm   49 sec   (3907 perm/sec)   p_kst 8.068421e-03   p_cons 2.968789e-01   p_joint 4.070526e-02

Outputting figure to mutsig2_images.part000000000199/ZNF705A.2_923_190000_0.0080684_0.29688_0.040705.png
                gene_name: ZNF705A
               theta_stop: 0.100 
                    nperm: 190000 
                     p_ks: 0.0081 
        ci_ks_bounds_left: 0.0077 
       ci_ks_bounds_right: 0.0085 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.041 
     ci_joint_bounds_left: 0.040 
    ci_joint_bounds_right: 0.042 

Current progress: 86 percent done.
ZNF71
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.237232e-02	ci left: 7.457390e-01	ci right 7.627127e-01	k: 7543	n:10000
Cons ci ratio: 9.178519e-03	ci left: 9.435701e-01	ci right 9.523667e-01	k: 9481	n:10000
KS ci ratio: 5.296607e-02	ci left: 3.444222e-01	ci right 3.632630e-01	k: 3538	n:10000
ZNF71   10000 perm   2 sec   (6127 perm/sec)   p_kst 3.538000e-01   p_cons 9.481000e-01   p_joint 7.543000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF71.2_1474_10000_0.3538_0.9481_0.7543.png
                gene_name: ZNF71
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.94 
     ci_cons_bounds_right: 0.95 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.75 
    ci_joint_bounds_right: 0.76 

Current progress: 88 percent done.
ZNF711
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.106743e-02	ci left: 1.817616e-01	ci right 1.972197e-01	k: 1894	n:10000
Cons ci ratio: 8.872880e-02	ci left: 1.560058e-01	ci right 1.705909e-01	k: 1632	n:10000
KS ci ratio: 1.351584e-02	ci left: 8.875964e-01	ci right 8.997732e-01	k: 8938	n:10000
ZNF711   10000 perm   2 sec   (5816 perm/sec)   p_kst 8.938000e-01   p_cons 1.632000e-01   p_joint 1.894000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF711.2_2314_10000_0.8938_0.1632_0.1894.png
                gene_name: ZNF711
               theta_stop: 0.089 
                    nperm: 10000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.16 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.17 
                  p_joint: 0.19 
     ci_joint_bounds_left: 0.18 
    ci_joint_bounds_right: 0.20 

Current progress: 89 percent done.
ZNF718
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.479465e-02	ci left: 4.238575e-01	ci right 4.433812e-01	k: 4336	n:10000
KS ci ratio: 4.081873e-02	ci left: 4.698654e-01	ci right 4.895465e-01	k: 4797	n:10000
ZNF718   10000 perm   2 sec   (6214 perm/sec)   p_kst 4.797000e-01   p_cons 4.336000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF718.2_1453_10000_0.4797_0.4336_1.png
                gene_name: ZNF718
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.48 
        ci_ks_bounds_left: 0.47 
       ci_ks_bounds_right: 0.49 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 91 percent done.
ZNF746
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.585788e-02	ci left: 8.524324e-01	ci right 8.661576e-01	k: 8594	n:10000
KS ci ratio: 1.321513e-02	ci left: 8.919018e-01	ci right 9.038653e-01	k: 8980	n:10000
ZNF746   10000 perm   2 sec   (5974 perm/sec)   p_kst 8.980000e-01   p_cons 8.594000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000199/ZNF746.2_1966_10000_0.898_0.8594_1.png
                gene_name: ZNF746
               theta_stop: 0.016 
                    nperm: 10000 
                     p_ks: 0.90 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.85 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 92 percent done.
ZNF750
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.422880e-02	ci left: 3.337920e-01	ci right 3.524995e-01	k: 3431	n:10000
Cons ci ratio: 1.816171e-02	ci left: 8.156806e-01	ci right 8.307306e-01	k: 8233	n:10000
KS ci ratio: 7.376657e-02	ci left: 2.120120e-01	ci right 2.283513e-01	k: 2201	n:10000
ZNF750   10000 perm   2 sec   (6274 perm/sec)   p_kst 2.201000e-01   p_cons 8.233000e-01   p_joint 3.431000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF750.2_2180_10000_0.2201_0.8233_0.3431.png
                gene_name: ZNF750
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.22 
        ci_ks_bounds_left: 0.21 
       ci_ks_bounds_right: 0.23 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 94 percent done.
ZNF76
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.274035e-02	ci left: 7.395713e-01	ci right 7.566839e-01	k: 7482	n:10000
Cons ci ratio: 2.103697e-02	ci left: 7.681038e-01	ci right 7.845349e-01	k: 7764	n:10000
KS ci ratio: 3.544597e-02	ci left: 5.402861e-01	ci right 5.598847e-01	k: 5501	n:10000
ZNF76   10000 perm   2 sec   (6181 perm/sec)   p_kst 5.501000e-01   p_cons 7.764000e-01   p_joint 7.482000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF76.2_1765_10000_0.5501_0.7764_0.7482.png
                gene_name: ZNF76
               theta_stop: 0.035 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.78 
                  p_joint: 0.75 
     ci_joint_bounds_left: 0.74 
    ci_joint_bounds_right: 0.76 

Current progress: 95 percent done.
ZNF777
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.334987e-02	ci left: 7.293641e-01	ci right 7.466970e-01	k: 7381	n:10000
Cons ci ratio: 3.817290e-02	ci left: 5.033509e-01	ci right 5.230414e-01	k: 5132	n:10000
KS ci ratio: 2.976835e-02	ci left: 6.246718e-01	ci right 6.436500e-01	k: 6342	n:10000
ZNF777   10000 perm   2 sec   (5895 perm/sec)   p_kst 6.342000e-01   p_cons 5.132000e-01   p_joint 7.381000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF777.2_2516_10000_0.6342_0.5132_0.7381.png
                gene_name: ZNF777
               theta_stop: 0.038 
                    nperm: 10000 
                     p_ks: 0.63 
        ci_ks_bounds_left: 0.62 
       ci_ks_bounds_right: 0.64 
                   p_cons: 0.51 
      ci_cons_bounds_left: 0.50 
     ci_cons_bounds_right: 0.52 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 97 percent done.
ZNF778
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.983895e-02	ci left: 6.235661e-01	ci right 6.425563e-01	k: 6331	n:10000
Cons ci ratio: 4.690855e-02	ci left: 4.014334e-01	ci right 4.208184e-01	k: 4111	n:10000
KS ci ratio: 2.493607e-02	ci left: 7.029129e-01	ci right 7.207635e-01	k: 7119	n:10000
ZNF778   10000 perm   2 sec   (5969 perm/sec)   p_kst 7.119000e-01   p_cons 4.111000e-01   p_joint 6.331000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF778.2_2210_10000_0.7119_0.4111_0.6331.png
                gene_name: ZNF778
               theta_stop: 0.047 
                    nperm: 10000 
                     p_ks: 0.71 
        ci_ks_bounds_left: 0.70 
       ci_ks_bounds_right: 0.72 
                   p_cons: 0.41 
      ci_cons_bounds_left: 0.40 
     ci_cons_bounds_right: 0.42 
                  p_joint: 0.63 
     ci_joint_bounds_left: 0.62 
    ci_joint_bounds_right: 0.64 

Current progress: 98 percent done.
ZNF786
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.093584e-02	ci left: 2.836945e-01	ci right 3.016265e-01	k: 2926	n:10000
Cons ci ratio: 8.109383e-02	ci left: 1.816632e-01	ci right 1.971182e-01	k: 1893	n:10000
KS ci ratio: 7.463565e-03	ci left: 9.613148e-01	ci right 9.686110e-01	k: 9651	n:10000
ZNF786   10000 perm   2 sec   (6023 perm/sec)   p_kst 9.651000e-01   p_cons 1.893000e-01   p_joint 2.926000e-01

Outputting figure to mutsig2_images.part000000000199/ZNF786.2_2365_10000_0.9651_0.1893_0.2926.png
                gene_name: ZNF786
               theta_stop: 0.081 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.96 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.20 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000199
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 199 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

Sender: LSF System <lsf@node1654>
Subject: Job 9894220: <scatter_180055> Done

Job <scatter_180055> was submitted from host <node409> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1654>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000200> was used as the working directory.
Started at Sat Oct  6 00:37:08 2012
Results reported at Sat Oct  6 00:45:18 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000200.tries`
echo -n `expr ${tries} + 1` > /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000200.tries
python /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/run_matlab.py --with-display /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 200  -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200

return_code=$?
if [ ${return_code} -ne 0 ]; then
tries=`cat /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000200.tries`
if [ ${return_code} -ne 130 -a ${tries} -lt 3 ]; then
exit 167;
else
echo ${return_code} > exited;
exit 1;
fi
else
touch success
fi
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    511.24 sec.
    Max Memory :      3551 MB
    Max Swap   :      5903 MB

    Max Processes  :         7
    Max Threads    :        59

The output (if any) follows:

fh_MutSigRun
libdir = /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
-whichjob
200
-i
COADREAD
-maf
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf
-ppr
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt
-cov
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat
-cat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt
-pat
/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt
-genes
/xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt
-b
hg18
-genesets
/xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt
-cosmic
/xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv
-refseq
/xchip/cga1/annotation/db/ucsc/hg18/R.mat
-bd
/xchip/cga1/annotation/db/ucsc/hg18
-p
/xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt
-jobcount
200

              perform_mutsig2_analysis: 1
    use_sample_specific_mutation_rates: 1
       analyze_silent_nonsilent_ratios: 1
                sig_calculation_method: 'projection'
                          print_report: 0
                               patlist: [1x125 char]
                               covfile: [1x141 char]
                               mutfile: [1x116 char]
                               catfile: [1x142 char]
                              genelist: [1x68 char]
                                 build: 'hg18'
                            contextdir: []
               geneset_collection_file: [1x72 char]
                          build_cosmic: 'hg18'
                           cosmic_file: [1x70 char]
                          build_refseq: [1x41 char]
                             build_dir: '/xchip/cga1/annotation/db/ucsc/hg18'
                   build_genome_region: '/xchip/cga1/annotation/db/ucsc/hg18'
                                 quick: 0
              output_per_exon_coverage: 1
             output_per_exon_mutations: 0
            output_final_mutation_list: 1
              output_per_gene_coverage: 1
       output_per_gene_mutation_counts: 1
          output_sample_sig_gene_table: 1
    mutation_preprocessing_report_file: [1x146 char]
        mutation_filtering_report_file: [1x40 char]
                  using_scatter_gather: 1
               scatter_gather_jobcount: 200
               scatter_gather_whichjob: 200
                            is_scatter: 1
                             is_gather: 0

LOADING MUTATION DATA FOR SET "COADREAD"
Loading coverage... 

The following 835 genes have very low coverage and are being omitted:
    'A2LD1'            [     0]
    'ACTR3C'           [     0]
    'AG2'              [     0]
    'AGAP5'            [     0]
    'AGAP6'            [     0]
    'AGAP8'            [0.1291]
    'AGBL3'            [     0]
    'ALG1L2'           [     0]
    'AMY1A'            [0.0975]
    'AMY1B'            [0.0975]
    'AMY1C'            [0.0975]
    'ANKRD18A'         [     0]
    'ANKRD20A2'        [0.0953]
    'ANKRD20A3'        [0.2285]
    'ANKRD30B'         [     0]
    'ANKRD31'          [     0]
    'ANKRD33B'         [     0]
    'ANKRD34C'         [     0]
    'ANKRD36'          [0.0756]
    'ANKRD43'          [0.2245]
    'ANKRD58'          [0.1576]
    'ANKRD9'           [0.0776]
    'ANXA8'            [0.0308]
    'ANXA8L1'          [0.0308]
    'APOA1'            [0.2056]
    'ARHGAP23'         [     0]
    'ARHGAP40'         [     0]
    'ARHGAP42'         [     0]
    'ARHGEF33'         [     0]
    'ARL17A'           [     0]
    'ARL17B'           [0.0447]
    'ARL5C'            [     0]
    'ASAH2B'           [0.2321]
    'ASCL2'            [     0]
    'ASMT'             [     0]
    'ASMTL'            [     0]
    'ATAD3C'           [0.0606]
    'ATP5L2'           [     0]
    'ATXN1L'           [     0]
    'ATXN7L1'          [0.1676]
    'ATXN7L3B'         [     0]
    'BAGE2'            [0.2099]
    'BAGE3'            [0.2099]
    'BBC3'             [0.1649]
    'BCORL2'           [     0]
    'BEAN'             [     0]
    'BET3L'            [     0]
    'BHLHA15'          [0.2092]
    'BHLHA9'           [     0]
    'BHLHE23'          [0.2209]
    'BOLA2'            [     0]
    'BOLA2B'           [     0]
    'BOP1'             [0.1297]
    'BPY2'             [     0]
    'BPY2B'            [     0]
    'BPY2C'            [     0]
    'BSPH1'            [     0]
    'BTBD18'           [     0]
    'BTBD19'           [     0]
    'C10orf105'        [     0]
    'C10orf122'        [     0]
    'C10orf131'        [     0]
    'C10orf55'         [0.2069]
    'C10orf95'         [0.2284]
    'C11orf21'         [     0]
    'C11orf34'         [     0]
    'C11orf86'         [     0]
    'C11orf90'         [     0]
    'C11orf91'         [     0]
    'C11orf93'         [     0]
    'C11orf95'         [     0]
    'C12orf70'         [     0]
    'C12orf73'         [     0]
    'C12orf75'         [     0]
    'C13orf38'         [     0]
    'C14orf176'        [     0]
    'C14orf38'         [     0]
    'C14orf80'         [0.2201]
    'C15orf56'         [0.2012]
    'C15orf61'         [     0]
    'C15orf62'         [     0]
    'C16orf52'         [     0]
    'C16orf54'         [0.2228]
    'C17orf100'        [0.1701]
    'C17orf105'        [     0]
    'C17orf106'        [     0]
    'C17orf107'        [     0]
    'C17orf50'         [0.1981]
    'C17orf51'         [     0]
    'C17orf72'         [     0]
    'C17orf89'         [0.1435]
    'C17orf96'         [     0]
    'C17orf99'         [     0]
    'C19orf20'         [0.0922]
    'C19orf24'         [     0]
    'C19orf38'         [     0]
    'C19orf69'         [     0]
    'C19orf71'         [     0]
    'C19orf77'         [     0]
    'C1orf185'         [     0]
    'C1orf204'         [     0]
    'C1orf212'         [     0]
    'C1orf223'         [     0]
    'C1orf228'         [     0]
    'C1orf229'         [     0]
    'C1orf230'         [     0]
    'C1orf68'          [     0]
    'C1orf70'          [     0]
    'C20orf123'        [     0]
    'C20orf173'        [     0]
    'C20orf201'        [0.1265]
    'C20orf202'        [     0]
    'C20orf203'        [     0]
    'C22orf26'         [     0]
    'C22orf30'         [0.1030]
    'C22orf41'         [     0]
    'C22orf46'         [     0]
    'C2CD4B'           [0.0489]
    'C2CD4C'           [     0]
    'C2CD4D'           [     0]
    'C2orf27A'         [0.0516]
    'C2orf27B'         [0.0784]
    'C2orf72'          [     0]
    'C2orf74'          [     0]
    'C2orf81'          [     0]
    'C2orf82'          [0.0831]
    'C3orf16'          [     0]
    'C3orf77'          [     0]
    'C3orf78'          [     0]
    'C4A'              [0.1615]
    'C4B'              [0.1615]
    'C4orf47'          [     0]
    'C4orf48'          [     0]
    'C4orf52'          [     0]
    'C5orf47'          [     0]
    'C5orf52'          [     0]
    'C5orf60'          [     0]
    'C5orf62'          [0.0321]
    'C6orf103'         [     0]
    'C6orf132'         [     0]
    'C6orf141'         [     0]
    'C6orf163'         [     0]
    'C6orf52'          [     0]
    'C6orf94'          [     0]
    'C7orf71'          [     0]
    'C7orf72'          [     0]
    'C8orf30A'         [0.0430]
    'C8orf48'          [     0]
    'C8orf83'          [     0]
    'C9orf144B'        [     0]
    'C9orf169'         [     0]
    'C9orf57'          [     0]
    'CALHM3'           [     0]
    'CAPN14'           [     0]
    'CAPN8'            [     0]
    'CBWD3'            [0.2152]
    'CBWD5'            [0.2442]
    'CBY3'             [     0]
    'CCDC152'          [     0]
    'CCDC154'          [     0]
    'CCDC42B'          [     0]
    'CCDC79'           [     0]
    'CCDC85B'          [0.1142]
    'CCDC85C'          [     0]
    'CCL3L1'           [0.1169]
    'CCL3L3'           [0.1169]
    'CCL4L1'           [0.1060]
    'CCL4L2'           [0.1060]
    'CD24'             [     0]
    'CD99'             [     0]
    'CDC42EP5'         [0.1760]
    'CDHR4'            [0.1948]
    'CDKN1C'           [0.2007]
    'CDY1'             [     0]
    'CDY1B'            [     0]
    'CDY2A'            [     0]
    'CDY2B'            [     0]
    'CEBPA'            [0.2337]
    'CFC1'             [0.1150]
    'CFC1B'            [0.1150]
    'CHADL'            [     0]
    'CISD3'            [     0]
    'CITED4'           [     0]
    'CLDN24'           [     0]
    'CLEC2A'           [     0]
    'COL6A5'           [0.2236]
    'CPSF4L'           [     0]
    'CRLF2'            [     0]
    'CSAG2'            [     0]
    'CSAG3'            [     0]
    'CSF2RA'           [     0]
    'CT45A1'           [0.1058]
    'CT45A2'           [     0]
    'CT45A3'           [     0]
    'CT45A4'           [     0]
    'CT45A6'           [     0]
    'CT47A1'           [0.0161]
    'CT47A10'          [     0]
    'CT47A11'          [     0]
    'CT47A2'           [     0]
    'CT47A3'           [     0]
    'CT47A4'           [     0]
    'CT47A5'           [     0]
    'CT47A6'           [0.0161]
    'CT47A7'           [     0]
    'CT47A8'           [     0]
    'CT47A9'           [     0]
    'CT47B1'           [     0]
    'CTAG1A'           [     0]
    'CTAG1B'           [     0]
    'CTAGE4'           [     0]
    'CTAGE9'           [     0]
    'CTF1'             [0.2175]
    'CTU1'             [0.1137]
    'CTXN2'            [     0]
    'CXorf30'          [     0]
    'CXorf49'          [     0]
    'CXorf49B'         [     0]
    'CXorf51'          [     0]
    'CXorf64'          [     0]
    'DACT2'            [     0]
    'DACT3'            [0.1217]
    'DAZ1'             [0.0053]
    'DAZ2'             [0.0134]
    'DAZ3'             [0.0226]
    'DAZ4'             [0.0123]
    'DCAF8L2'          [     0]
    'DDT'              [0.2087]
    'DEFB103A'         [     0]
    'DEFB103B'         [     0]
    'DEFB105A'         [0.1250]
    'DEFB105B'         [0.1250]
    'DEFB107A'         [0.1488]
    'DEFB107B'         [0.1488]
    'DEFB130'          [     0]
    'DEFB133'          [     0]
    'DGAT1'            [0.2379]
    'DHRSX'            [     0]
    'DKFZP781G0119'    [     0]
    'DMRTA2'           [0.2467]
    'DMRTC1'           [0.1809]
    'DMRTC1B'          [0.1809]
    'DNAH12'           [0.1439]
    'DNAH14'           [0.0511]
    'DNAH6'            [0.0986]
    'DPCR1'            [0.1731]
    'DPH3B'            [     0]
    'DTHD1'            [     0]
    'DUX4'             [     0]
    'EBF4'             [     0]
    'EFCAB9'           [     0]
    'EFR3B'            [     0]
    'EIF3C'            [0.0898]
    'EIF3CL'           [0.0898]
    'ELFN1'            [     0]
    'EML6'             [     0]
    'EVPLL'            [     0]
    'EXOSC6'           [0.1200]
    'EYS'              [0.1877]
    'F8A1'             [0.0676]
    'F8A2'             [0.0676]
    'F8A3'             [0.0676]
    'FAM128B'          [0.2071]
    'FAM136B'          [     0]
    'FAM149B1'         [     0]
    'FAM156A'          [     0]
    'FAM156B'          [     0]
    'FAM157A'          [     0]
    'FAM157B'          [     0]
    'FAM159B'          [     0]
    'FAM160A1'         [     0]
    'FAM170B'          [     0]
    'FAM171A2'         [     0]
    'FAM178B'          [0.1805]
    'FAM180B'          [     0]
    'FAM181B'          [0.2420]
    'FAM184B'          [     0]
    'FAM185A'          [     0]
    'FAM186A'          [     0]
    'FAM189A1'         [     0]
    'FAM194B'          [     0]
    'FAM196B'          [     0]
    'FAM198A'          [     0]
    'FAM200B'          [     0]
    'FAM22A'           [0.2476]
    'FAM23A'           [0.0359]
    'FAM25A'           [     0]
    'FAM25B'           [     0]
    'FAM25C'           [     0]
    'FAM25G'           [     0]
    'FAM38A'           [     0]
    'FAM38B'           [0.1995]
    'FAM47E'           [     0]
    'FAM55B'           [     0]
    'FAM59B'           [     0]
    'FAM71E2'          [     0]
    'FAM75A1'          [0.2070]
    'FAM75A2'          [0.2070]
    'FAM75A5'          [0.0410]
    'FAM75A6'          [     0]
    'FAM75A7'          [0.0410]
    'FAM75C1'          [     0]
    'FAM86B2'          [     0]
    'FAM90A10'         [     0]
    'FAM90A13'         [     0]
    'FAM90A14'         [     0]
    'FAM90A18'         [     0]
    'FAM90A19'         [     0]
    'FAM90A20'         [     0]
    'FAM90A5'          [     0]
    'FAM90A7'          [     0]
    'FAM90A8'          [     0]
    'FAM90A9'          [     0]
    'FBRSL1'           [     0]
    'FHAD1'            [     0]
    'FIGNL2'           [0.2152]
    'FLJ25363'         [     0]
    'FLJ43859'         [     0]
    'FLJ44082'         [     0]
    'FLJ44606'         [     0]
    'FOXD4L2'          [     0]
    'FOXD4L4'          [     0]
    'FOXD4L5'          [     0]
    'FOXD4L6'          [0.1638]
    'FOXI2'            [0.2283]
    'FOXI3'            [     0]
    'FOXQ1'            [0.1912]
    'FRAT1'            [0.1567]
    'FRAT2'            [0.0549]
    'FREM3'            [     0]
    'FSD1L'            [     0]
    'FSIP2'            [0.2289]
    'GAGE12B'          [     0]
    'GAGE12C'          [0.0037]
    'GAGE12D'          [0.0037]
    'GAGE12E'          [0.0037]
    'GAGE12F'          [     0]
    'GAGE12G'          [     0]
    'GAGE12H'          [0.0056]
    'GAGE12I'          [     0]
    'GAGE12J'          [0.0934]
    'GAGE13'           [     0]
    'GAGE2A'           [0.0696]
    'GAGE2B'           [0.0910]
    'GAGE2C'           [0.1258]
    'GAGE2D'           [0.1374]
    'GAGE2E'           [0.0695]
    'GAGE4'            [     0]
    'GAGE5'            [     0]
    'GAGE6'            [     0]
    'GAGE7'            [     0]
    'GAGE8'            [0.0695]
    'GAS1'             [0.1871]
    'GATSL1'           [     0]
    'GATSL2'           [     0]
    'GCNT7'            [     0]
    'GDF1'             [0.1485]
    'GFRA4'            [0.2080]
    'GLYATL3'          [     0]
    'GOLGA6C'          [     0]
    'GOLGA6D'          [     0]
    'GOLGA6L1'         [0.1213]
    'GOLGA6L10'        [     0]
    'GOLGA6L6'         [     0]
    'GOLGA6L9'         [     0]
    'GOLGA8A'          [0.1838]
    'GOLGA8B'          [0.1102]
    'GP1BB'            [0.0139]
    'GPR144'           [     0]
    'GPR89C'           [     0]
    'GRAPL'            [     0]
    'GREB1L'           [     0]
    'GRID2IP'          [     0]
    'GRRP1'            [0.1530]
    'GSTM1'            [0.0638]
    'GSTT2'            [0.2279]
    'GSTT2B'           [0.2081]
    'H2AFB1'           [0.2060]
    'H2AFB2'           [     0]
    'H2AFB3'           [0.2060]
    'H2BFM'            [     0]
    'HBZ'              [0.2245]
    'HCP5'             [     0]
    'HCRT'             [0.2475]
    'HES2'             [0.1336]
    'HES5'             [0.2461]
    'HGC6.3'           [     0]
    'HHLA1'            [     0]
    'HIST2H2AA3'       [     0]
    'HIST2H2AA4'       [     0]
    'HIST2H3A'         [     0]
    'HIST2H3C'         [     0]
    'HIST2H4A'         [     0]
    'HIST2H4B'         [     0]
    'HMGXB3'           [     0]
    'HRK'              [     0]
    'HRNBP3'           [     0]
    'HSBP1L1'          [     0]
    'HSFX1'            [     0]
    'HSFX2'            [     0]
    'HSFY1'            [     0]
    'HSFY2'            [     0]
    'HSPA1A'           [0.2137]
    'HSPA1B'           [0.2098]
    'HSPB6'            [0.1885]
    'IFFO2'            [     0]
    'IGFN1'            [0.2334]
    'IKBKG'            [0.2361]
    'IL3RA'            [     0]
    'IL9R'             [     0]
    'IQCF5'            [     0]
    'IQCF6'            [     0]
    'IRGM'             [     0]
    'KBTBD11'          [0.0623]
    'KBTBD13'          [0.1928]
    'KCP'              [     0]
    'KDM4DL'           [     0]
    'KHDC1L'           [     0]
    'KIAA0040'         [     0]
    'KIAA1107'         [     0]
    'KIAA1239'         [     0]
    'KIAA1671'         [     0]
    'KIAA1731'         [     0]
    'KILLIN'           [     0]
    'KIR3DP1'          [0.0148]
    'KLF13'            [0.2300]
    'KLF16'            [0.2401]
    'KLF2'             [0.1829]
    'KLHL29'           [     0]
    'KLHL33'           [     0]
    'KPNA7'            [     0]
    'KRTAP2-1'         [     0]
    'KRTAP2-4'         [0.0723]
    'KRTAP20-3'        [     0]
    'KRTAP21-3'        [     0]
    'KRTAP22-2'        [     0]
    'KRTAP25-1'        [     0]
    'KRTAP4-11'        [     0]
    'KRTAP4-7'         [     0]
    'KRTAP4-8'         [     0]
    'KRTAP4-9'         [     0]
    'KRTAP5-4'         [     0]
    'KRTAP7-1'         [     0]
    'LCE6A'            [     0]
    'LEUTX'            [     0]
    'LIMS3'            [     0]
    'LIPM'             [     0]
    'LIPT2'            [     0]
    'LOC100128071'     [     0]
    'LOC100128542'     [     0]
    'LOC100130274'     [     0]
    'LOC100130932'     [     0]
    'LOC100130933'     [     0]
    'LOC100131801'     [     0]
    'LOC100132247'     [     0]
    'LOC100132963'     [     0]
    'LOC100133893'     [     0]
    'LOC100287428'     [     0]
    'LOC100287718'     [     0]
    'LOC100288797'     [     0]
    'LOC200030'        [0.0763]
    'LOC221710'        [     0]
    'LOC283999'        [     0]
    'LOC339047'        [     0]
    'LOC342346'        [     0]
    'LOC360030'        [     0]
    'LOC375190'        [     0]
    'LOC388588'        [     0]
    'LOC388946'        [     0]
    'LOC389333'        [     0]
    'LOC389493'        [     0]
    'LOC390595'        [     0]
    'LOC391322'        [     0]
    'LOC400696'        [     0]
    'LOC401097'        [     0]
    'LOC401387'        [     0]
    'LOC402644'        [     0]
    'LOC402778'        [     0]
    'LOC440563'        [     0]
    'LOC441056'        [     0]
    'LOC441294'        [0.1300]
    'LOC441869'        [     0]
    'LOC642597'        [     0]
    'LOC643008'        [     0]
    'LOC643596'        [     0]
    'LOC643677'        [     0]
    'LOC644538'        [     0]
    'LOC645961'        [     0]
    'LOC646627'        [     0]
    'LOC646851'        [     0]
    'LOC647309'        [     0]
    'LOC650293'        [     0]
    'LOC653543'        [     0]
    'LOC653544'        [     0]
    'LOC653545'        [     0]
    'LOC653548'        [     0]
    'LOC728392'        [     0]
    'LOC728410'        [     0]
    'LOC729020'        [     0]
    'LOC729991'        [     0]
    'LOC730755'        [     0]
    'LOR'              [0.1772]
    'LOXHD1'           [     0]
    'LRRC10B'          [     0]
    'LRRC26'           [0.0932]
    'LRRC37A'          [0.0612]
    'LRRC37A2'         [0.2484]
    'LRRC69'           [     0]
    'LRRC70'           [     0]
    'LUZP6'            [     0]
    'MAFA'             [0.1454]
    'MAGEA2'           [     0]
    'MAGEA2B'          [     0]
    'MAGEA9'           [0.0495]
    'MAGEA9B'          [0.0495]
    'MAGED4'           [0.0104]
    'MAGED4B'          [0.0126]
    'MARVELD1'         [     0]
    'MBD3L2'           [0.0983]
    'MBD3L3'           [     0]
    'MBD3L4'           [     0]
    'MBD3L5'           [     0]
    'MBOAT4'           [     0]
    'METRN'            [0.1935]
    'METTL11B'         [     0]
    'MEX3D'            [0.2402]
    'MGC70857'         [0.2425]
    'MGC87042'         [     0]
    'MICA'             [     0]
    'MMP23B'           [0.0804]
    'MORN2'            [     0]
    'MRC1'             [0.2449]
    'MRC1L1'           [0.2449]
    'MRGPRG'           [     0]
    'MSL3L2'           [     0]
    'MUC12'            [     0]
    'MYADML2'          [     0]
    'NACAD'            [     0]
    'NAIP'             [0.0961]
    'NANOS1'           [0.1161]
    'NAT14'            [0.2482]
    'NBPF10'           [     0]
    'NBPF11'           [0.0763]
    'NBPF4'            [     0]
    'NBPF6'            [     0]
    'NBPF9'            [     0]
    'NEURL1B'          [     0]
    'NHSL1'            [     0]
    'NKX1-2'           [     0]
    'NKX2-6'           [     0]
    'NOTO'             [     0]
    'NPB'              [0.1004]
    'NPIPL3'           [0.1226]
    'NXF2'             [0.2377]
    'NXF2B'            [0.2377]
    'OLIG1'            [0.1410]
    'ONECUT3'          [0.1416]
    'OR4C45'           [     0]
    'OR4F16'           [     0]
    'OR4F29'           [     0]
    'OR4F3'            [     0]
    'OR56A5'           [     0]
    'OR6P1'            [     0]
    'OST4'             [     0]
    'OTUD1'            [     0]
    'P2RY8'            [     0]
    'PABPC1L2A'        [0.0649]
    'PABPC1L2B'        [     0]
    'PABPC4L'          [     0]
    'PALM3'            [     0]
    'PARG'             [     0]
    'PATE3'            [     0]
    'PATE4'            [     0]
    'PATL2'            [     0]
    'PCSK1N'           [0.0519]
    'PDF'              [0.2497]
    'PET117'           [     0]
    'PGA3'             [0.0489]
    'PGA4'             [0.0333]
    'PHGR1'            [     0]
    'PHOX2A'           [0.2209]
    'PKD1L3'           [     0]
    'PL-5283'          [     0]
    'PLCXD1'           [     0]
    'PNMA6A'           [     0]
    'POM121L2'         [     0]
    'POTEC'            [     0]
    'POTEM'            [     0]
    'POU5F1B'          [     0]
    'PPIAL4A'          [0.1595]
    'PPIAL4B'          [     0]
    'PPIAL4C'          [     0]
    'PPIAL4D'          [     0]
    'PPIAL4E'          [     0]
    'PPIAL4F'          [     0]
    'PPP1R3G'          [     0]
    'PPP2R3B'          [     0]
    'PRAMEF11'         [     0]
    'PRAMEF15'         [     0]
    'PRAMEF16'         [0.2280]
    'PRAMEF20'         [0.0913]
    'PRAMEF21'         [0.0913]
    'PRAMEF22'         [0.1686]
    'PRAMEF3'          [     0]
    'PRAMEF5'          [0.0284]
    'PRAMEF6'          [0.1597]
    'PRAMEF7'          [0.2256]
    'PRAMEF8'          [0.1504]
    'PRAMEF9'          [     0]
    'PRDM6'            [     0]
    'PRR18'            [0.1450]
    'PRR20A'           [     0]
    'PRR20B'           [     0]
    'PRR20C'           [     0]
    'PRR20D'           [     0]
    'PRR20E'           [     0]
    'PRR23A'           [     0]
    'PRR23C'           [     0]
    'PRR24'            [     0]
    'PRRT4'            [     0]
    'PRSS41'           [     0]
    'PRY'              [     0]
    'PRY2'             [     0]
    'PSMG4'            [     0]
    'PTGER1'           [0.1838]
    'PTPN20A'          [0.0835]
    'PTPN20B'          [0.0835]
    'PTPRQ'            [     0]
    'R3HCC1'           [     0]
    'RAD21L1'          [     0]
    'RASA4'            [0.1776]
    'RASL10A'          [0.2303]
    'RBM20'            [     0]
    'RBMXL3'           [     0]
    'RBMY1A1'          [0.0368]
    'RBMY1B'           [0.0565]
    'RBMY1D'           [0.0565]
    'RBMY1E'           [0.0385]
    'RBMY1F'           [0.0336]
    'RBMY1J'           [0.0336]
    'RESP18'           [     0]
    'REXO1L1'          [0.0511]
    'RFPL4A'           [     0]
    'RFX8'             [     0]
    'RGPD1'            [0.1331]
    'RGPD2'            [0.1370]
    'RGPD3'            [     0]
    'RGPD4'            [     0]
    'RGPD5'            [0.0254]
    'RGPD6'            [0.0254]
    'RGPD8'            [0.0217]
    'RGSL1'            [     0]
    'RIMBP3B'          [     0]
    'RIMBP3C'          [     0]
    'RNF187'           [     0]
    'RNF208'           [0.0124]
    'RNF222'           [     0]
    'RPS17'            [     0]
    'RTL1'             [0.1406]
    'SAP25'            [     0]
    'SCRT1'            [0.0201]
    'SCT'              [0.2067]
    'SCXA'             [     0]
    'SCXB'             [     0]
    'SDHAF1'           [0.2308]
    'SERF1A'           [     0]
    'SERF1B'           [     0]
    'SETD1B'           [     0]
    'SFRS17A'          [     0]
    'SFT2D3'           [0.0283]
    'SFTPA1'           [     0]
    'SFTPA2'           [     0]
    'SH3D20'           [0.1374]
    'SHISA6'           [     0]
    'SHISA7'           [     0]
    'SHISA9'           [     0]
    'SHOX'             [     0]
    'SLC15A5'          [     0]
    'SLC22A18AS'       [     0]
    'SLC22A24'         [     0]
    'SLC25A6'          [     0]
    'SLC35E2'          [0.2277]
    'SLC48A1'          [0.1545]
    'SLFN12L'          [     0]
    'SLFN14'           [     0]
    'SMN1'             [0.0600]
    'SMN2'             [0.0588]
    'SOX1'             [0.2270]
    'SP9'              [     0]
    'SPACA5'           [0.1604]
    'SPACA5B'          [0.1604]
    'SPANXA1'          [     0]
    'SPANXA2'          [     0]
    'SPANXB1'          [     0]
    'SPANXB2'          [     0]
    'SPANXF1'          [     0]
    'SPATA24'          [     0]
    'SPATA3'           [     0]
    'SPDYE2'           [0.0152]
    'SPDYE2L'          [0.0152]
    'SPDYE4'           [     0]
    'SPDYE6'           [     0]
    'SPINT3'           [     0]
    'SPRN'             [0.0503]
    'SPRY3'            [     0]
    'SRRM5'            [0.0256]
    'SSC5D'            [     0]
    'SSX2'             [     0]
    'SSX2B'            [     0]
    'SSX4'             [0.1885]
    'SSX4B'            [0.1885]
    'STAG3L1'          [0.0467]
    'STARD9'           [     0]
    'SULT1A3'          [0.0368]
    'SULT1A4'          [0.0368]
    'SYCE1L'           [     0]
    'TARM1'            [     0]
    'TAS1R3'           [0.1663]
    'TBC1D3'           [0.0566]
    'TBC1D3B'          [0.1394]
    'TBC1D3C'          [0.0217]
    'TBC1D3F'          [0.0411]
    'TBC1D3G'          [0.0259]
    'TBC1D3H'          [     0]
    'TCEB3CL'          [0.2493]
    'TCF15'            [0.2149]
    'TCP10L2'          [     0]
    'TDRD12'           [     0]
    'TEX28'            [     0]
    'TIGD1'            [     0]
    'TLCD2'            [     0]
    'TMEM114'          [     0]
    'TMEM132C'         [     0]
    'TMEM151B'         [     0]
    'TMEM158'          [     0]
    'TMEM160'          [0.1718]
    'TMEM194B'         [     0]
    'TMEM203'          [0.0663]
    'TMEM212'          [     0]
    'TMEM229A'         [     0]
    'TMEM232'          [     0]
    'TMEM233'          [     0]
    'TMEM88B'          [     0]
    'TMPRSS11BNL'      [     0]
    'TOMM6'            [     0]
    'TP53TG3'          [     0]
    'TP53TG3B'         [     0]
    'TRIM43B'          [     0]
    'TRIM49L'          [     0]
    'TRIM64'           [     0]
    'TRIM64B'          [     0]
    'TRIM66'           [     0]
    'TRIM77'           [     0]
    'TRNP1'            [     0]
    'TSPY3'            [0.0059]
    'TSPY4'            [0.0554]
    'TSTD1'            [     0]
    'TTC28'            [     0]
    'TUSC1'            [0.0807]
    'TXNRD3'           [     0]
    'TYW1B'            [     0]
    'UBE2QL1'          [     0]
    'UBTFL1'           [     0]
    'UNC80'            [0.0887]
    'UNCX'             [0.2195]
    'UPF0639'          [     0]
    'UPK3BL'           [     0]
    'URB1'             [     0]
    'USP17'            [0.0417]
    'USP27X'           [     0]
    'UTF1'             [0.0647]
    'VAMP7'            [     0]
    'VCX3A'            [0.2493]
    'VCY'              [     0]
    'VCY1B'            [     0]
    'VSIG10L'          [     0]
    'VSTM2B'           [     0]
    'VWA1'             [0.0868]
    'VWA5B1'           [     0]
    'VWA5B2'           [0.0012]
    'VWDE'             [     0]
    'WASH1'            [0.0582]
    'WDFY4'            [     0]
    'WDR87'            [     0]
    'XAGE1A'           [     0]
    'XAGE1B'           [     0]
    'XAGE1C'           [     0]
    'XAGE1D'           [     0]
    'XAGE1E'           [     0]
    'XAGE2'            [     0]
    'XAGE2B'           [     0]
    'XKRY'             [     0]
    'XKRY2'            [     0]
    'ZAR1L'            [     0]
    'ZBED1'            [     0]
    'ZBED3'            [0.0167]
    'ZBED5'            [     0]
    'ZBED6'            [     0]
    'ZBTB42'           [     0]
    'ZBTB8B'           [     0]
    'ZCCHC18'          [     0]
    'ZFP62'            [     0]
    'ZFP92'            [     0]
    'ZNF286B'          [     0]
    'ZNF389'           [     0]
    'ZNF469'           [     0]
    'ZNF541'           [     0]
    'ZNF579'           [0.2340]
    'ZNF679'           [     0]
    'ZNF703'           [0.2389]
    'ZNF705G'          [     0]
    'ZNF716'           [     0]
    'ZNF717'           [     0]
    'ZNF720'           [     0]
    'ZNF727'           [     0]
    'ZNF732'           [     0]
    'ZNF735'           [     0]
    'ZNF736'           [     0]
    'ZNF737'           [     0]
    'ZNF771'           [0.0281]
    'ZNF805'           [     0]
    'ZNF814'           [     0]
    'ZNF837'           [     0]
    'ZNF841'           [     0]
    'ZNF843'           [     0]
    'ZNF844'           [     0]
    'ZNF845'           [     0]
    'ZNF853'           [     0]
    'ZNF860'           [     0]
    'ZNF879'           [     0]
    'ZNF90'            [     0]
    'ZSCAN12'          [     0]
    'ZSCAN23'          [     0]
    'ZSWIM6'           [     0]
    'ZYG11A'           [     0]

The above 835 genes have very low coverage and are being omitted.
Loading gene list... 

The following 835 genes are being omittted because coverage is zero/redacted:
    'A2LD1'
    'ACTR3C'
    'AG2'
    'AGAP5'
    'AGAP6'
    'AGAP8'
    'AGBL3'
    'ALG1L2'
    'AMY1A'
    'AMY1B'
    'AMY1C'
    'ANKRD18A'
    'ANKRD20A2'
    'ANKRD20A3'
    'ANKRD30B'
    'ANKRD31'
    'ANKRD33B'
    'ANKRD34C'
    'ANKRD36'
    'ANKRD43'
    'ANKRD58'
    'ANKRD9'
    'ANXA8'
    'ANXA8L1'
    'APOA1'
    'ARHGAP23'
    'ARHGAP40'
    'ARHGAP42'
    'ARHGEF33'
    'ARL17A'
    'ARL17B'
    'ARL5C'
    'ASAH2B'
    'ASCL2'
    'ASMT'
    'ASMTL'
    'ATAD3C'
    'ATP5L2'
    'ATXN1L'
    'ATXN7L1'
    'ATXN7L3B'
    'BAGE2'
    'BAGE3'
    'BBC3'
    'BCORL2'
    'BEAN'
    'BET3L'
    'BHLHA15'
    'BHLHA9'
    'BHLHE23'
    'BOLA2'
    'BOLA2B'
    'BOP1'
    'BPY2'
    'BPY2B'
    'BPY2C'
    'BSPH1'
    'BTBD18'
    'BTBD19'
    'C10orf105'
    'C10orf122'
    'C10orf131'
    'C10orf55'
    'C10orf95'
    'C11orf21'
    'C11orf34'
    'C11orf86'
    'C11orf90'
    'C11orf91'
    'C11orf93'
    'C11orf95'
    'C12orf70'
    'C12orf73'
    'C12orf75'
    'C13orf38'
    'C14orf176'
    'C14orf38'
    'C14orf80'
    'C15orf56'
    'C15orf61'
    'C15orf62'
    'C16orf52'
    'C16orf54'
    'C17orf100'
    'C17orf105'
    'C17orf106'
    'C17orf107'
    'C17orf50'
    'C17orf51'
    'C17orf72'
    'C17orf89'
    'C17orf96'
    'C17orf99'
    'C19orf20'
    'C19orf24'
    'C19orf38'
    'C19orf69'
    'C19orf71'
    'C19orf77'
    'C1orf185'
    'C1orf204'
    'C1orf212'
    'C1orf223'
    'C1orf228'
    'C1orf229'
    'C1orf230'
    'C1orf68'
    'C1orf70'
    'C20orf123'
    'C20orf173'
    'C20orf201'
    'C20orf202'
    'C20orf203'
    'C22orf26'
    'C22orf30'
    'C22orf41'
    'C22orf46'
    'C2CD4B'
    'C2CD4C'
    'C2CD4D'
    'C2orf27A'
    'C2orf27B'
    'C2orf72'
    'C2orf74'
    'C2orf81'
    'C2orf82'
    'C3orf16'
    'C3orf77'
    'C3orf78'
    'C4A'
    'C4B'
    'C4orf47'
    'C4orf48'
    'C4orf52'
    'C5orf47'
    'C5orf52'
    'C5orf60'
    'C5orf62'
    'C6orf103'
    'C6orf132'
    'C6orf141'
    'C6orf163'
    'C6orf52'
    'C6orf94'
    'C7orf71'
    'C7orf72'
    'C8orf30A'
    'C8orf48'
    'C8orf83'
    'C9orf144B'
    'C9orf169'
    'C9orf57'
    'CALHM3'
    'CAPN14'
    'CAPN8'
    'CBWD3'
    'CBWD5'
    'CBY3'
    'CCDC152'
    'CCDC154'
    'CCDC42B'
    'CCDC79'
    'CCDC85B'
    'CCDC85C'
    'CCL3L1'
    'CCL3L3'
    'CCL4L1'
    'CCL4L2'
    'CD24'
    'CD99'
    'CDC42EP5'
    'CDHR4'
    'CDKN1C'
    'CDY1'
    'CDY1B'
    'CDY2A'
    'CDY2B'
    'CEBPA'
    'CFC1'
    'CFC1B'
    'CHADL'
    'CISD3'
    'CITED4'
    'CLDN24'
    'CLEC2A'
    'COL6A5'
    'CPSF4L'
    'CRLF2'
    'CSAG2'
    'CSAG3'
    'CSF2RA'
    'CT45A1'
    'CT45A2'
    'CT45A3'
    'CT45A4'
    'CT45A6'
    'CT47A1'
    'CT47A10'
    'CT47A11'
    'CT47A2'
    'CT47A3'
    'CT47A4'
    'CT47A5'
    'CT47A6'
    'CT47A7'
    'CT47A8'
    'CT47A9'
    'CT47B1'
    'CTAG1A'
    'CTAG1B'
    'CTAGE4'
    'CTAGE9'
    'CTF1'
    'CTU1'
    'CTXN2'
    'CXorf30'
    'CXorf49'
    'CXorf49B'
    'CXorf51'
    'CXorf64'
    'DACT2'
    'DACT3'
    'DAZ1'
    'DAZ2'
    'DAZ3'
    'DAZ4'
    'DCAF8L2'
    'DDT'
    'DEFB103A'
    'DEFB103B'
    'DEFB105A'
    'DEFB105B'
    'DEFB107A'
    'DEFB107B'
    'DEFB130'
    'DEFB133'
    'DGAT1'
    'DHRSX'
    'DKFZP781G0119'
    'DMRTA2'
    'DMRTC1'
    'DMRTC1B'
    'DNAH12'
    'DNAH14'
    'DNAH6'
    'DPCR1'
    'DPH3B'
    'DTHD1'
    'DUX4'
    'EBF4'
    'EFCAB9'
    'EFR3B'
    'EIF3C'
    'EIF3CL'
    'ELFN1'
    'EML6'
    'EVPLL'
    'EXOSC6'
    'EYS'
    'F8A1'
    'F8A2'
    'F8A3'
    'FAM128B'
    'FAM136B'
    'FAM149B1'
    'FAM156A'
    'FAM156B'
    'FAM157A'
    'FAM157B'
    'FAM159B'
    'FAM160A1'
    'FAM170B'
    'FAM171A2'
    'FAM178B'
    'FAM180B'
    'FAM181B'
    'FAM184B'
    'FAM185A'
    'FAM186A'
    'FAM189A1'
    'FAM194B'
    'FAM196B'
    'FAM198A'
    'FAM200B'
    'FAM22A'
    'FAM23A'
    'FAM25A'
    'FAM25B'
    'FAM25C'
    'FAM25G'
    'FAM38A'
    'FAM38B'
    'FAM47E'
    'FAM55B'
    'FAM59B'
    'FAM71E2'
    'FAM75A1'
    'FAM75A2'
    'FAM75A5'
    'FAM75A6'
    'FAM75A7'
    'FAM75C1'
    'FAM86B2'
    'FAM90A10'
    'FAM90A13'
    'FAM90A14'
    'FAM90A18'
    'FAM90A19'
    'FAM90A20'
    'FAM90A5'
    'FAM90A7'
    'FAM90A8'
    'FAM90A9'
    'FBRSL1'
    'FHAD1'
    'FIGNL2'
    'FLJ25363'
    'FLJ43859'
    'FLJ44082'
    'FLJ44606'
    'FOXD4L2'
    'FOXD4L4'
    'FOXD4L5'
    'FOXD4L6'
    'FOXI2'
    'FOXI3'
    'FOXQ1'
    'FRAT1'
    'FRAT2'
    'FREM3'
    'FSD1L'
    'FSIP2'
    'GAGE12B'
    'GAGE12C'
    'GAGE12D'
    'GAGE12E'
    'GAGE12F'
    'GAGE12G'
    'GAGE12H'
    'GAGE12I'
    'GAGE12J'
    'GAGE13'
    'GAGE2A'
    'GAGE2B'
    'GAGE2C'
    'GAGE2D'
    'GAGE2E'
    'GAGE4'
    'GAGE5'
    'GAGE6'
    'GAGE7'
    'GAGE8'
    'GAS1'
    'GATSL1'
    'GATSL2'
    'GCNT7'
    'GDF1'
    'GFRA4'
    'GLYATL3'
    'GOLGA6C'
    'GOLGA6D'
    'GOLGA6L1'
    'GOLGA6L10'
    'GOLGA6L6'
    'GOLGA6L9'
    'GOLGA8A'
    'GOLGA8B'
    'GP1BB'
    'GPR144'
    'GPR89C'
    'GRAPL'
    'GREB1L'
    'GRID2IP'
    'GRRP1'
    'GSTM1'
    'GSTT2'
    'GSTT2B'
    'H2AFB1'
    'H2AFB2'
    'H2AFB3'
    'H2BFM'
    'HBZ'
    'HCP5'
    'HCRT'
    'HES2'
    'HES5'
    'HGC6.3'
    'HHLA1'
    'HIST2H2AA3'
    'HIST2H2AA4'
    'HIST2H3A'
    'HIST2H3C'
    'HIST2H4A'
    'HIST2H4B'
    'HMGXB3'
    'HRK'
    'HRNBP3'
    'HSBP1L1'
    'HSFX1'
    'HSFX2'
    'HSFY1'
    'HSFY2'
    'HSPA1A'
    'HSPA1B'
    'HSPB6'
    'IFFO2'
    'IGFN1'
    'IKBKG'
    'IL3RA'
    'IL9R'
    'IQCF5'
    'IQCF6'
    'IRGM'
    'KBTBD11'
    'KBTBD13'
    'KCP'
    'KDM4DL'
    'KHDC1L'
    'KIAA0040'
    'KIAA1107'
    'KIAA1239'
    'KIAA1671'
    'KIAA1731'
    'KILLIN'
    'KIR3DP1'
    'KLF13'
    'KLF16'
    'KLF2'
    'KLHL29'
    'KLHL33'
    'KPNA7'
    'KRTAP2-1'
    'KRTAP2-4'
    'KRTAP20-3'
    'KRTAP21-3'
    'KRTAP22-2'
    'KRTAP25-1'
    'KRTAP4-11'
    'KRTAP4-7'
    'KRTAP4-8'
    'KRTAP4-9'
    'KRTAP5-4'
    'KRTAP7-1'
    'LCE6A'
    'LEUTX'
    'LIMS3'
    'LIPM'
    'LIPT2'
    'LOC100128071'
    'LOC100128542'
    'LOC100130274'
    'LOC100130932'
    'LOC100130933'
    'LOC100131801'
    'LOC100132247'
    'LOC100132963'
    'LOC100133893'
    'LOC100287428'
    'LOC100287718'
    'LOC100288797'
    'LOC200030'
    'LOC221710'
    'LOC283999'
    'LOC339047'
    'LOC342346'
    'LOC360030'
    'LOC375190'
    'LOC388588'
    'LOC388946'
    'LOC389333'
    'LOC389493'
    'LOC390595'
    'LOC391322'
    'LOC400696'
    'LOC401097'
    'LOC401387'
    'LOC402644'
    'LOC402778'
    'LOC440563'
    'LOC441056'
    'LOC441294'
    'LOC441869'
    'LOC642597'
    'LOC643008'
    'LOC643596'
    'LOC643677'
    'LOC644538'
    'LOC645961'
    'LOC646627'
    'LOC646851'
    'LOC647309'
    'LOC650293'
    'LOC653543'
    'LOC653544'
    'LOC653545'
    'LOC653548'
    'LOC728392'
    'LOC728410'
    'LOC729020'
    'LOC729991'
    'LOC730755'
    'LOR'
    'LOXHD1'
    'LRRC10B'
    'LRRC26'
    'LRRC37A'
    'LRRC37A2'
    'LRRC69'
    'LRRC70'
    'LUZP6'
    'MAFA'
    'MAGEA2'
    'MAGEA2B'
    'MAGEA9'
    'MAGEA9B'
    'MAGED4'
    'MAGED4B'
    'MARVELD1'
    'MBD3L2'
    'MBD3L3'
    'MBD3L4'
    'MBD3L5'
    'MBOAT4'
    'METRN'
    'METTL11B'
    'MEX3D'
    'MGC70857'
    'MGC87042'
    'MICA'
    'MMP23B'
    'MORN2'
    'MRC1'
    'MRC1L1'
    'MRGPRG'
    'MSL3L2'
    'MUC12'
    'MYADML2'
    'NACAD'
    'NAIP'
    'NANOS1'
    'NAT14'
    'NBPF10'
    'NBPF11'
    'NBPF4'
    'NBPF6'
    'NBPF9'
    'NEURL1B'
    'NHSL1'
    'NKX1-2'
    'NKX2-6'
    'NOTO'
    'NPB'
    'NPIPL3'
    'NXF2'
    'NXF2B'
    'OLIG1'
    'ONECUT3'
    'OR4C45'
    'OR4F16'
    'OR4F29'
    'OR4F3'
    'OR56A5'
    'OR6P1'
    'OST4'
    'OTUD1'
    'P2RY8'
    'PABPC1L2A'
    'PABPC1L2B'
    'PABPC4L'
    'PALM3'
    'PARG'
    'PATE3'
    'PATE4'
    'PATL2'
    'PCSK1N'
    'PDF'
    'PET117'
    'PGA3'
    'PGA4'
    'PHGR1'
    'PHOX2A'
    'PKD1L3'
    'PL-5283'
    'PLCXD1'
    'PNMA6A'
    'POM121L2'
    'POTEC'
    'POTEM'
    'POU5F1B'
    'PPIAL4A'
    'PPIAL4B'
    'PPIAL4C'
    'PPIAL4D'
    'PPIAL4E'
    'PPIAL4F'
    'PPP1R3G'
    'PPP2R3B'
    'PRAMEF11'
    'PRAMEF15'
    'PRAMEF16'
    'PRAMEF20'
    'PRAMEF21'
    'PRAMEF22'
    'PRAMEF3'
    'PRAMEF5'
    'PRAMEF6'
    'PRAMEF7'
    'PRAMEF8'
    'PRAMEF9'
    'PRDM6'
    'PRR18'
    'PRR20A'
    'PRR20B'
    'PRR20C'
    'PRR20D'
    'PRR20E'
    'PRR23A'
    'PRR23C'
    'PRR24'
    'PRRT4'
    'PRSS41'
    'PRY'
    'PRY2'
    'PSMG4'
    'PTGER1'
    'PTPN20A'
    'PTPN20B'
    'PTPRQ'
    'R3HCC1'
    'RAD21L1'
    'RASA4'
    'RASL10A'
    'RBM20'
    'RBMXL3'
    'RBMY1A1'
    'RBMY1B'
    'RBMY1D'
    'RBMY1E'
    'RBMY1F'
    'RBMY1J'
    'RESP18'
    'REXO1L1'
    'RFPL4A'
    'RFX8'
    'RGPD1'
    'RGPD2'
    'RGPD3'
    'RGPD4'
    'RGPD5'
    'RGPD6'
    'RGPD8'
    'RGSL1'
    'RIMBP3B'
    'RIMBP3C'
    'RNF187'
    'RNF208'
    'RNF222'
    'RPS17'
    'RTL1'
    'SAP25'
    'SCRT1'
    'SCT'
    'SCXA'
    'SCXB'
    'SDHAF1'
    'SERF1A'
    'SERF1B'
    'SETD1B'
    'SFRS17A'
    'SFT2D3'
    'SFTPA1'
    'SFTPA2'
    'SH3D20'
    'SHISA6'
    'SHISA7'
    'SHISA9'
    'SHOX'
    'SLC15A5'
    'SLC22A18AS'
    'SLC22A24'
    'SLC25A6'
    'SLC35E2'
    'SLC48A1'
    'SLFN12L'
    'SLFN14'
    'SMN1'
    'SMN2'
    'SOX1'
    'SP9'
    'SPACA5'
    'SPACA5B'
    'SPANXA1'
    'SPANXA2'
    'SPANXB1'
    'SPANXB2'
    'SPANXF1'
    'SPATA24'
    'SPATA3'
    'SPDYE2'
    'SPDYE2L'
    'SPDYE4'
    'SPDYE6'
    'SPINT3'
    'SPRN'
    'SPRY3'
    'SRRM5'
    'SSC5D'
    'SSX2'
    'SSX2B'
    'SSX4'
    'SSX4B'
    'STAG3L1'
    'STARD9'
    'SULT1A3'
    'SULT1A4'
    'SYCE1L'
    'TARM1'
    'TAS1R3'
    'TBC1D3'
    'TBC1D3B'
    'TBC1D3C'
    'TBC1D3F'
    'TBC1D3G'
    'TBC1D3H'
    'TCEB3CL'
    'TCF15'
    'TCP10L2'
    'TDRD12'
    'TEX28'
    'TIGD1'
    'TLCD2'
    'TMEM114'
    'TMEM132C'
    'TMEM151B'
    'TMEM158'
    'TMEM160'
    'TMEM194B'
    'TMEM203'
    'TMEM212'
    'TMEM229A'
    'TMEM232'
    'TMEM233'
    'TMEM88B'
    'TMPRSS11BNL'
    'TOMM6'
    'TP53TG3'
    'TP53TG3B'
    'TRIM43B'
    'TRIM49L'
    'TRIM64'
    'TRIM64B'
    'TRIM66'
    'TRIM77'
    'TRNP1'
    'TSPY3'
    'TSPY4'
    'TSTD1'
    'TTC28'
    'TUSC1'
    'TXNRD3'
    'TYW1B'
    'UBE2QL1'
    'UBTFL1'
    'UNC80'
    'UNCX'
    'UPF0639'
    'UPK3BL'
    'URB1'
    'USP17'
    'USP27X'
    'UTF1'
    'VAMP7'
    'VCX3A'
    'VCY'
    'VCY1B'
    'VSIG10L'
    'VSTM2B'
    'VWA1'
    'VWA5B1'
    'VWA5B2'
    'VWDE'
    'WASH1'
    'WDFY4'
    'WDR87'
    'XAGE1A'
    'XAGE1B'
    'XAGE1C'
    'XAGE1D'
    'XAGE1E'
    'XAGE2'
    'XAGE2B'
    'XKRY'
    'XKRY2'
    'ZAR1L'
    'ZBED1'
    'ZBED3'
    'ZBED5'
    'ZBED6'
    'ZBTB42'
    'ZBTB8B'
    'ZCCHC18'
    'ZFP62'
    'ZFP92'
    'ZNF286B'
    'ZNF389'
    'ZNF469'
    'ZNF541'
    'ZNF579'
    'ZNF679'
    'ZNF703'
    'ZNF705G'
    'ZNF716'
    'ZNF717'
    'ZNF720'
    'ZNF727'
    'ZNF732'
    'ZNF735'
    'ZNF736'
    'ZNF737'
    'ZNF771'
    'ZNF805'
    'ZNF814'
    'ZNF837'
    'ZNF841'
    'ZNF843'
    'ZNF844'
    'ZNF845'
    'ZNF853'
    'ZNF860'
    'ZNF879'
    'ZNF90'
    'ZSCAN12'
    'ZSCAN23'
    'ZSWIM6'
    'ZYG11A'

Loading patient list... 
Loading categories... 
Loading mutations... 
Assigning mutations to categories...
Designated 305 double-null mutations.
Removed assignments of their 344 partner-null mutations; these will be omitted from analysis.

                                  0      1      2      3    4     5    6      TOTAL  
       De_novo_Start_InFrame      0      0      0      0    0    21    0         21  
    De_novo_Start_OutOfFrame      2      0      0      0    0   156    2        160  
             Frame_Shift_Del     31      0      0      0    0  1304   19       1354  
             Frame_Shift_Ins      3      0      0      0    0   817   19        839  
                In_Frame_Del      0      0      0      0    0   170    0        170  
                In_Frame_Ins      0      0      0      0    0    27    0         27  
                    Missense      0      0      0      0    0     1    0          1  
           Missense_Mutation      0  20573  21236  12219  569     1    0      54598  
           Nonsense_Mutation    294      0      0      0    0  4842  264       5400  
            Nonstop_Mutation      0      0      0      0    0    38    0         38  
                Read-through      0      0      0      0    0    10    0         10  
                      Silent      0   9309   6243   3466  304     0    0      19322  
                 Splice_Site     14      0      0      0    0   191    1        206  
      Translation_Start_Site      0      0      0      2    0     0    0          2  

                       TOTAL    344  29882  27479  15687  873  7578  305      82148  

0 unassigned     
1 *CpG->T        
2 *Cp(A/C/T)->mut
3 A->mut         
4 *CpG->(G/A)    
5 indel+null     
6 double_null    
Mutations not in gene set:
                .: [1]
          AADACL1: [1]
          ABCC6P2: [1]
             ADFP: [1]
              AK4: [1]
          AKAP17A: [1]
            AMY1B: [1]
          ANXA8L1: [1]
         ARHGAP42: [1]
          ARPP-21: [1]
            ASMTL: [1]
            ATAT1: [1]
            ATG13: [1]
            BAGE2: [1]
          BRUNOL4: [1]
          BRUNOL5: [1]
            BXDC5: [1]
        C10orf104: [1]
        C10orf141: [1]
         C11orf79: [1]
         C12orf30: [1]
        C14orf133: [1]
         C14orf48: [1]
         C15orf21: [1]
         C1orf222: [1]
         C20orf39: [1]
         C21orf34: [1]
           C2CD4C: [1]
          C2orf21: [1]
          C2orf52: [1]
          C3orf44: [1]
          C3orf77: [1]
          C4orf18: [1]
           C4orf8: [1]
          C7orf38: [1]
          C7orf62: [1]
            CBWD3: [1]
           CCDC79: [1]
             CD99: [1]
           CDC2L5: [1]
          CEP57L1: [1]
            CES4A: [1]
           CLCA3P: [1]
            CRKRS: [1]
           CT47A6: [1]
         CTAGE15P: [1]
             CTF1: [1]
          CXorf15: [1]
          CXorf67: [1]
         DEFB105B: [1]
            DGAT1: [1]
           DMRTC1: [1]
        DPY19L2P1: [1]
           ERVWE1: [1]
            EVPLL: [1]
           FAM12A: [1]
          FAM178B: [1]
          FAM200B: [1]
          FAM75A5: [1]
         FLJ20184: [1]
         FLJ33360: [1]
         FLJ35776: [1]
         FLJ39582: [1]
         FLJ40504: [1]
            FOXI2: [1]
            GFRA4: [1]
         GOLGA6L1: [1]
            GPSN2: [1]
          GSTM2P1: [1]
           GVINP1: [1]
           H2AFB1: [1]
            HCG27: [1]
            HDHD1: [1]
            HLA-H: [1]
           HSPA1B: [1]
              HTA: [1]
           IGF2AS: [1]
            IL8RB: [1]
             IL9R: [1]
            IQWD1: [1]
           IZUMO2: [1]
           IZUMO4: [1]
             KDM1: [1]
         KIAA0040: [1]
         KIAA1128: [1]
         KIAA1219: [1]
            KIF22: [1]
            KLRA1: [1]
          LEPREL4: [1]
            LIN28: [1]
            LPAL2: [1]
         LRRC37A2: [1]
           LRRC69: [1]
            MAK10: [1]
          MEIS3P1: [1]
          METAP1D: [1]
           MMP23B: [1]
            MORG1: [1]
             MPN2: [1]
             MRC1: [1]
           MST1P9: [1]
            MTFP1: [1]
             MZT1: [1]
            NAPSB: [1]
            NAT14: [1]
       NCRNA00052: [1]
       NCRNA00174: [1]
       NCRNA00175: [1]
       NCRNA00188: [1]
             NPL2: [1]
          NSUN5P1: [1]
            OFCC1: [1]
             ORC2: [1]
             ORC5: [1]
             ORC6: [1]
            OSTCL: [1]
             PARG: [1]
            PCTK2: [1]
            PFTK1: [1]
           PLCXD1: [1]
             PLIN: [1]
         PPP1R2P9: [1]
           PPP6R2: [1]
         PRAMEF20: [1]
             PRKY: [1]
          PTPN20B: [1]
            PXMP3: [1]
            RBM20: [1]
          RIMBP3C: [1]
          RLBP1L1: [1]
    RP5-1000E10.4: [1]
          RPSAP52: [1]
            RWDD4: [1]
         SDCCAG10: [1]
            SERHL: [1]
        SERPINA13: [1]
         SLC25A47: [1]
         SLC7A5P2: [1]
           SPAG4L: [1]
         SRD5A2L2: [1]
           SRSF10: [1]
            SRSF2: [1]
            SRSF9: [1]
            SUNC1: [1]
      SYS1-DBNDD2: [1]
           SYT14L: [1]
           TADA1L: [1]
           TADA3L: [1]
          TBC1D3C: [1]
            TBCKL: [1]
            TSEPA: [1]
            TSP50: [1]
            TTC28: [1]
           UGCGL1: [1]
          UNQ1887: [1]
          UNQ9391: [1]
            VAMP7: [1]
           WASH5P: [1]
           ZNF469: [1]
           ZNF509: [1]
           ZNF720: [1]
           ZNF767: [1]
           ZNF843: [1]
        hCG_17324: [1]
            ADAM6: [2]
            ADCK3: [2]
          AKR1CL1: [2]
           ASAH2B: [2]
             ASMT: [2]
            ATG14: [2]
         C10orf92: [2]
         C15orf51: [2]
         C19orf34: [2]
         C1orf157: [2]
           C1orf2: [2]
         C1orf200: [2]
          C1orf71: [2]
             C3P1: [2]
              C4B: [2]
         C6orf103: [2]
         C6orf227: [2]
           CLASRP: [2]
          CTDNEP1: [2]
             CTU1: [2]
            DHRSX: [2]
          FAM183B: [2]
          FAM18B1: [2]
           FAM22A: [2]
           FAM27L: [2]
          FAM74A3: [2]
          GAGE12J: [2]
          HISPPD1: [2]
            HPVC1: [2]
             IKIP: [2]
            IL3RA: [2]
         KIAA1618: [2]
           KLKBL4: [2]
        LOC643923: [2]
             LVRN: [2]
          M6PRBP1: [2]
             NAIP: [2]
           NARG1L: [2]
          NSUN5P2: [2]
             ORC4: [2]
              P11: [2]
            P2RY8: [2]
           PCDH21: [2]
           PCDH24: [2]
          POGLUT1: [2]
             POLS: [2]
         PRAMEF22: [2]
          RLBP1L2: [2]
      RP1-21O18.1: [2]
           SETD1B: [2]
         SLC25A48: [2]
          SLC48A1: [2]
          SLFN12L: [2]
            SREK1: [2]
           SRSF11: [2]
            SRSF7: [2]
             TCL6: [2]
            TNRC4: [2]
             VNN3: [2]
           WDR21A: [2]
           WDR21C: [2]
            WDR22: [2]
           WDR40B: [2]
           WDR42A: [2]
           WDSOF1: [2]
           WT1-AS: [2]
           ZNF703: [2]
          ZNF826P: [2]
          ZNF833P: [2]
             AOF1: [3]
          AP1GBP1: [3]
         C1orf212: [3]
        C20orf200: [3]
         C21orf66: [3]
             CCZ1: [3]
            CDHR4: [3]
            CTSL3: [3]
           DNAH14: [3]
            DNAH6: [3]
            DPCR1: [3]
             EVI1: [3]
           FAM62A: [3]
           FAM62B: [3]
           FIGNL2: [3]
            N-PAC: [3]
            OR3A4: [3]
            PAP2D: [3]
            PCTK1: [3]
          PRAMEF8: [3]
              QSK: [3]
             RBFA: [3]
            RRP36: [3]
            RSHL1: [3]
           SAMD15: [3]
            SKOR1: [3]
            SPRY3: [3]
         SREK1IP1: [3]
            SRSF5: [3]
            SRSF6: [3]
            UNC80: [3]
           WDR42B: [3]
           WDR51A: [3]
            ZBED1: [3]
           ZNF271: [3]
          ATXN7L1: [4]
         C12orf67: [4]
           DNAH12: [4]
          KIR3DX1: [4]
          L3MBTL1: [4]
        LOC389458: [4]
           NBPF11: [4]
           PPP6R1: [4]
            PRSS7: [4]
           SRSF12: [4]
             TTI1: [4]
        ANKRD20A3: [5]
         ARHGEF25: [5]
         ARHGEF40: [5]
             FAN1: [5]
             MAU2: [5]
             ORC3: [5]
           RBFOX2: [5]
             RICS: [5]
          SPECC1L: [5]
            SRSF4: [5]
           WDR21B: [5]
          ZSCAN30: [5]
          C3orf25: [6]
           FAM38B: [6]
            IGFN1: [6]
             LINS: [6]
        LOC155060: [6]
             SSX6: [6]
             VRTN: [6]
           BTN2A3: [7]
           SPICE1: [7]
            SUGP2: [7]
          TRAPPC8: [7]
         ARHGAP44: [8]
           COL6A5: [8]
           CSF2RA: [8]
             ORC1: [8]
           RBFOX1: [8]
    RP13-102H20.1: [8]
           SFSWAP: [8]
           SPECC1: [8]
            CES5A: [9]
           PPP6R3: [9]
           ZNF816: [9]
         ARHGEF26: [10]
          FAM75D1: [10]
              EYS: [11]
            FSIP2: [11]
         LOC57653: [11]
             LTN1: [11]
          SRSF2IP: [13]
             SLX4: [16]
           DROSHA: [19]
        ----TOTAL: [784]
Categories not in categ set:
          NaN: [344]
    ----TOTAL: [344]
Mutations not in categ set:
       ABCA13: [1]
        ACOT4: [1]
         ACPP: [1]
       ACVR2A: [1]
        ADAM6: [1]
      ADAMTS3: [1]
         AIM1: [1]
        AKAP3: [1]
        AKAP5: [1]
        ALPK2: [1]
         APOB: [1]
        APPL1: [1]
        ARID2: [1]
       ARID5B: [1]
        ARMC3: [1]
        ARNTL: [1]
        ASTE1: [1]
       ATP2B1: [1]
          B2M: [1]
        BIRC6: [1]
         BNC1: [1]
        BOD1L: [1]
         BPTF: [1]
        BRWD3: [1]
    C14orf118: [1]
     C19orf44: [1]
     C1orf114: [1]
    C20orf194: [1]
           C3: [1]
      C3orf58: [1]
     CACNA2D3: [1]
       CACNG2: [1]
       CAPZA2: [1]
     CCDC144A: [1]
      CCDC160: [1]
       CCDC30: [1]
       CCDC41: [1]
        CENPE: [1]
       CEP192: [1]
       CEP290: [1]
       COL6A6: [1]
        CSPP1: [1]
       CTNND2: [1]
       CYP3A7: [1]
      DENND4A: [1]
        DMXL2: [1]
        DNAH3: [1]
      DNAJC28: [1]
        DOCK7: [1]
         E2F7: [1]
         EEA1: [1]
       EFCAB5: [1]
        EFHC1: [1]
        ERAP1: [1]
         FAT3: [1]
        FOXM1: [1]
         FSCB: [1]
      GPRASP2: [1]
       GRIN2A: [1]
         HCN1: [1]
      HEATR5A: [1]
      HEATR5B: [1]
       HECTD2: [1]
        HECW2: [1]
       HEPHL1: [1]
        HERC3: [1]
         HIP1: [1]
      HLA-DRA: [1]
     HLA-DRB1: [1]
        HYDIN: [1]
        INTS1: [1]
         IPMK: [1]
         IQUB: [1]
        ITPR2: [1]
        ITSN1: [1]
        ITSN2: [1]
        KCNB2: [1]
        KCNH1: [1]
        KDM3B: [1]
     KIAA0562: [1]
       KIF20B: [1]
        KIF5B: [1]
       LARP1B: [1]
          LY9: [1]
        MAP1B: [1]
         MCF2: [1]
         MFN1: [1]
          MGA: [1]
       MGAT4C: [1]
         MIA3: [1]
         MKS1: [1]
         MLL5: [1]
         MSH6: [1]
        MUC16: [1]
         MYH1: [1]
        MYO3A: [1]
         MYPN: [1]
         NBEA: [1]
          NEB: [1]
      PCDH11X: [1]
       PCDHB3: [1]
       PDGFRA: [1]
      PHACTR3: [1]
         POLI: [1]
      PPP1R9A: [1]
        PRDM9: [1]
         PTEN: [1]
       PTPN13: [1]
       PTPN21: [1]
        PTPRR: [1]
      RANBP17: [1]
          RB1: [1]
        RGAG1: [1]
        RGS22: [1]
         RIF1: [1]
       RNF111: [1]
       RNF213: [1]
          RP1: [1]
        RPE65: [1]
      RPGRIP1: [1]
         SBF2: [1]
         SETX: [1]
         SGCB: [1]
        SGMS2: [1]
        SHPRH: [1]
      SIPA1L2: [1]
      SLC30A9: [1]
      SLC35F1: [1]
      SLCO1B1: [1]
          SLK: [1]
        SMAD4: [1]
       SMCHD1: [1]
        SNX25: [1]
         SOX9: [1]
       SPAG16: [1]
       SPAG17: [1]
       SPATA1: [1]
        SPON1: [1]
       SPTAN1: [1]
        SUZ12: [1]
        SYCP1: [1]
        SYNE2: [1]
         TAP1: [1]
         TAP2: [1]
      TAX1BP1: [1]
       TCERG1: [1]
         TET2: [1]
        TIAM1: [1]
         TJP1: [1]
         TLR3: [1]
       TMED10: [1]
     TMEM185A: [1]
         TNS3: [1]
         TP63: [1]
       TRANK1: [1]
        TRPM1: [1]
        TTC13: [1]
         UACA: [1]
         UBR4: [1]
        UGGT2: [1]
        UPF3B: [1]
        USP24: [1]
         UTRN: [1]
       VPS13C: [1]
        WDR17: [1]
        WDR64: [1]
         WNK3: [1]
       ZNF326: [1]
       ZNF431: [1]
       ZNF440: [1]
       ZNF555: [1]
       ZNF644: [1]
       ZNF671: [1]
       ZNF709: [1]
       ZNHIT6: [1]
          ATM: [2]
        CAMKV: [2]
        CNGB3: [2]
        CSMD1: [2]
        DNAH5: [2]
        DNAH9: [2]
       EFCAB6: [2]
        FCHO2: [2]
         FGD6: [2]
        HERC1: [2]
        HLA-B: [2]
        HMCN1: [2]
         JAK2: [2]
        KAT2B: [2]
     KIAA0564: [2]
       LRRIQ1: [2]
       MCF2L2: [2]
       MYCBP2: [2]
        MYO1B: [2]
          NF1: [2]
       NUP205: [2]
        ODF2L: [2]
         PCLO: [2]
         PCM1: [2]
       PIK3R1: [2]
        REV3L: [2]
         RSF1: [2]
       SCAND3: [2]
        SYNE1: [2]
        TEX15: [2]
         TMPO: [2]
         TNIK: [2]
      TP53BP1: [2]
          TPR: [2]
       UBXN11: [2]
        ZDBF2: [2]
          DST: [3]
        LRP1B: [3]
       DNAH11: [4]
       GOLGB1: [4]
        ZNF14: [4]
      DYNC2H1: [7]
          TTN: [18]
          APC: [54]
    ----TOTAL: [344]

Mutations in this patient+gene+categ set: 81021/82148
	0 mutations not in patient set
	784 mutations not in gene set
	344 mutations not in categ set
		(Note: at least 305 of these are excluded because they are partners to double-nulls.)
Ignoring 0 flank indels

Building coverage table...
Building mutation tables
Omitting 34 "impossible" mutations in gene-patient-category bins having zero coverage.

All data loaded
Finding number of unique sites, unique patients: 1000/18030 2000/18030 3000/18030 4000/18030 5000/18030 6000/18030 7000/18030 8000/18030 9000/18030 10000/18030 11000/18030 12000/18030 13000/18030 14000/18030 15000/18030 16000/18030 17000/18030 18000/18030 
Projection mode warning: n subtotals in output table still reflect total mutation counts, not # mutated patients

Estimated nonsilent background mutation rates

            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   6.92e-06    6.9/Mb  (relative = 0.75)
             A->mut   3.69e-06    3.7/Mb  (relative = 0.40)
        *CpG->(G/A)   1.52e-06    1.5/Mb  (relative = 0.16)
         indel+null   1.11e-06    1.1/Mb  (relative = 0.12)
        double_null   4.54e-08    0.0/Mb  (relative = 0.00)
              Total   9.24e-06    9.2/Mb  (relative = 1.00)


Estimated SAMPLE-SPECIFIC nonsilent background mutation rates

COAD-A6-2670
            *CpG->T   5.31e-06    5.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.40)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.82)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.88)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   7.59e-07    0.8/Mb  (relative = 1.00)

COAD-A6-2672
            *CpG->T   8.30e-05   83.0/Mb  (relative = 5.86)
    *Cp(A/C/T)->mut   9.54e-06    9.5/Mb  (relative = 0.67)
             A->mut   8.41e-06    8.4/Mb  (relative = 0.59)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.28)
         indel+null   1.17e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.42e-05   14.2/Mb  (relative = 1.00)

COAD-A6-2674
            *CpG->T   7.31e-06    7.3/Mb  (relative = 10.60)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.55)
             A->mut   6.95e-08    0.1/Mb  (relative = 0.10)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.90e-07    0.7/Mb  (relative = 1.00)

COAD-A6-2676
            *CpG->T   1.40e-04  140.2/Mb  (relative = 6.85)
    *Cp(A/C/T)->mut   1.27e-05   12.7/Mb  (relative = 0.62)
             A->mut   8.69e-06    8.7/Mb  (relative = 0.42)
        *CpG->(G/A)   6.64e-06    6.6/Mb  (relative = 0.32)
         indel+null   2.76e-06    2.8/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-05   20.4/Mb  (relative = 1.00)

COAD-A6-2677
            *CpG->T   1.53e-05   15.3/Mb  (relative = 7.77)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.74)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.68)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-A6-2678
            *CpG->T   6.64e-06    6.6/Mb  (relative = 3.16)
    *Cp(A/C/T)->mut   2.29e-06    2.3/Mb  (relative = 1.09)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-A6-2683
            *CpG->T   1.46e-05   14.6/Mb  (relative = 5.97)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.81)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.27)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.45e-06    2.4/Mb  (relative = 1.00)

COAD-A6-3807
            *CpG->T   1.04e-05   10.4/Mb  (relative = 4.44)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.77)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.49)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.74)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

COAD-A6-3808
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.43)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.36)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.89)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

COAD-A6-3810
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.73)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.06e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3514
            *CpG->T   1.66e-05   16.6/Mb  (relative = 8.16)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   3.10e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.03e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3516
            *CpG->T   1.51e-04  151.5/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.75)
             A->mut   1.02e-05   10.2/Mb  (relative = 0.44)
        *CpG->(G/A)   5.98e-06    6.0/Mb  (relative = 0.26)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.34e-05   23.4/Mb  (relative = 1.00)

COAD-AA-3517
            *CpG->T   1.06e-05   10.6/Mb  (relative = 11.01)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.63)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3518
            *CpG->T   8.37e-05   83.7/Mb  (relative = 5.75)
    *Cp(A/C/T)->mut   1.06e-05   10.6/Mb  (relative = 0.73)
             A->mut   7.23e-06    7.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.14)
         indel+null   1.72e-06    1.7/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.46e-05   14.6/Mb  (relative = 1.00)

COAD-AA-3519
            *CpG->T   7.97e-06    8.0/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.39)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.03)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3520
            *CpG->T   1.93e-05   19.3/Mb  (relative = 10.74)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

COAD-AA-3521
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3522
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.82)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3524
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.48)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.49)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.52)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.28e-06    1.3/Mb  (relative = 1.00)

COAD-AA-3525
            *CpG->T   1.06e-04  106.3/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.68)
             A->mut   6.60e-06    6.6/Mb  (relative = 0.41)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.13)
         indel+null   2.17e-06    2.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-05   15.9/Mb  (relative = 1.00)

COAD-AA-3526
            *CpG->T   1.46e-05   14.6/Mb  (relative = 9.42)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.86)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3527
            *CpG->T   1.40e-05   14.0/Mb  (relative = 6.22)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.68)
             A->mut   1.04e-06    1.0/Mb  (relative = 0.47)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.89)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3529
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.96)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.62)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3530
            *CpG->T   1.78e-05   17.8/Mb  (relative = 8.10)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.72)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3531
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.53e-06    1.5/Mb  (relative = 0.80)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.05)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3532
            *CpG->T   6.64e-06    6.6/Mb  (relative = 5.84)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.60)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.17)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.21)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3534
            *CpG->T   1.59e-05   15.9/Mb  (relative = 9.25)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.71)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3538
            *CpG->T   5.31e-06    5.3/Mb  (relative = 4.82)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.48)
             A->mut   9.73e-07    1.0/Mb  (relative = 0.88)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3542
            *CpG->T   8.64e-06    8.6/Mb  (relative = 0.77)
    *Cp(A/C/T)->mut   1.08e-05   10.8/Mb  (relative = 0.96)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.89)
        *CpG->(G/A)   5.31e-06    5.3/Mb  (relative = 0.48)
         indel+null   6.55e-07    0.7/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-3543
            *CpG->T   4.25e-05   42.5/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   4.58e-06    4.6/Mb  (relative = 0.69)
             A->mut   2.85e-06    2.9/Mb  (relative = 0.43)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.40)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.59e-06    6.6/Mb  (relative = 1.00)

COAD-AA-3544
            *CpG->T   1.40e-05   14.0/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.45)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.88)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3548
            *CpG->T   1.13e-05   11.3/Mb  (relative = 11.29)
    *Cp(A/C/T)->mut   2.29e-07    0.2/Mb  (relative = 0.23)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

COAD-AA-3549
            *CpG->T   7.31e-06    7.3/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.95)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.49)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.79)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3552
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.76)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.70)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.52e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3553
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.47)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3554
            *CpG->T   1.22e-04  122.2/Mb  (relative = 14.59)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.19)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.13)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   7.59e-07    0.8/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.38e-06    8.4/Mb  (relative = 1.00)

COAD-AA-3555
            *CpG->T   1.44e-04  144.2/Mb  (relative = 5.77)
    *Cp(A/C/T)->mut   2.14e-05   21.4/Mb  (relative = 0.86)
             A->mut   8.06e-06    8.1/Mb  (relative = 0.32)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.16)
         indel+null   3.41e-06    3.4/Mb  (relative = 0.14)
        double_null   2.07e-07    0.2/Mb  (relative = 0.01)
              Total   2.50e-05   25.0/Mb  (relative = 1.00)

COAD-AA-3556
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.94)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.79)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.14)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.69)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-3558
            *CpG->T   1.99e-05   19.9/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.47)
             A->mut   1.95e-06    1.9/Mb  (relative = 0.63)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.21)
         indel+null   3.79e-07    0.4/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   3.10e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3560
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.52)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.62e-06    1.6/Mb  (relative = 1.00)

COAD-AA-3561
            *CpG->T   1.06e-05   10.6/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.74)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3562
            *CpG->T   8.64e-06    8.6/Mb  (relative = 7.59)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.87)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.18)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.14e-06    1.1/Mb  (relative = 1.00)

COAD-AA-3664
            *CpG->T   3.34e-05   33.4/Mb  (relative = 8.06)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.51)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.14e-06    4.1/Mb  (relative = 1.00)

COAD-AA-3666
            *CpG->T   1.96e-05   19.6/Mb  (relative = 4.69)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.62)
             A->mut   2.90e-06    2.9/Mb  (relative = 0.69)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.28)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.18e-06    4.2/Mb  (relative = 1.00)

COAD-AA-3667
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.73)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3672
            *CpG->T   2.43e-04  242.8/Mb  (relative = 5.40)
    *Cp(A/C/T)->mut   2.92e-05   29.2/Mb  (relative = 0.65)
             A->mut   1.85e-05   18.5/Mb  (relative = 0.41)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.10)
         indel+null   8.38e-06    8.4/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.49e-05   44.9/Mb  (relative = 1.00)

COAD-AA-3673
            *CpG->T   1.84e-05   18.4/Mb  (relative = 8.75)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.41)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.55)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3678
            *CpG->T   1.61e-05   16.1/Mb  (relative = 8.31)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.52)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3679
            *CpG->T   1.21e-05   12.1/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.80)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.60)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3680
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.49)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.21)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.39)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.93e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3681
            *CpG->T   2.65e-05   26.5/Mb  (relative = 8.56)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.04)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3684
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3685
            *CpG->T   1.21e-05   12.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.80)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.56)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3688
            *CpG->T   9.21e-06    9.2/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.59)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.67)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.71e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3692
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.86)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.69)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.24)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.34)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.68e-06    1.7/Mb  (relative = 1.00)

COAD-AA-3693
            *CpG->T   1.44e-05   14.4/Mb  (relative = 4.05)
    *Cp(A/C/T)->mut   3.39e-06    3.4/Mb  (relative = 0.96)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.16)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3695
            *CpG->T   4.20e-05   42.0/Mb  (relative = 9.61)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.56)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.15)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.26)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.37e-06    4.4/Mb  (relative = 1.00)

COAD-AA-3696
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.10)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.59)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.43e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3710
            *CpG->T   1.66e-04  166.3/Mb  (relative = 5.24)
    *Cp(A/C/T)->mut   2.48e-05   24.8/Mb  (relative = 0.78)
             A->mut   1.55e-05   15.5/Mb  (relative = 0.49)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.15)
         indel+null   3.09e-06    3.1/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   3.17e-05   31.7/Mb  (relative = 1.00)

COAD-AA-3715
            *CpG->T   2.23e-04  223.3/Mb  (relative = 4.63)
    *Cp(A/C/T)->mut   3.18e-05   31.8/Mb  (relative = 0.66)
             A->mut   2.86e-05   28.6/Mb  (relative = 0.59)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.23)
         indel+null   6.38e-06    6.4/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   4.82e-05   48.2/Mb  (relative = 1.00)

COAD-AA-3811
            *CpG->T   1.82e-04  182.4/Mb  (relative = 6.88)
    *Cp(A/C/T)->mut   1.41e-05   14.1/Mb  (relative = 0.53)
             A->mut   1.26e-05   12.6/Mb  (relative = 0.48)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.11)
         indel+null   3.32e-06    3.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.65e-05   26.5/Mb  (relative = 1.00)

COAD-AA-3812
            *CpG->T   1.96e-05   19.6/Mb  (relative = 7.44)
    *Cp(A/C/T)->mut   1.73e-06    1.7/Mb  (relative = 0.66)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.88)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3814
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.76)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3818
            *CpG->T   2.19e-05   21.9/Mb  (relative = 6.58)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.67)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.37)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.52)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.10)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.32e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3819
            *CpG->T   1.21e-05   12.1/Mb  (relative = 2.70)
    *Cp(A/C/T)->mut   4.62e-06    4.6/Mb  (relative = 1.03)
             A->mut   2.23e-06    2.2/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.39)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.47e-06    4.5/Mb  (relative = 1.00)

COAD-AA-3821
            *CpG->T   1.42e-04  141.6/Mb  (relative = 6.72)
    *Cp(A/C/T)->mut   1.05e-05   10.5/Mb  (relative = 0.50)
             A->mut   5.33e-06    5.3/Mb  (relative = 0.25)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.22)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.25)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   2.11e-05   21.1/Mb  (relative = 1.00)

COAD-AA-3831
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.37)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.65)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3833
            *CpG->T   9.21e-05   92.1/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   8.73e-06    8.7/Mb  (relative = 0.70)
             A->mut   3.78e-06    3.8/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.05)
         indel+null   1.32e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-05   12.4/Mb  (relative = 1.00)

COAD-AA-3837
            *CpG->T   2.47e-05   24.7/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.66)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.30)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-3842
            *CpG->T   1.38e-05   13.8/Mb  (relative = 7.12)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.60)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-3844
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.82)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 1.03)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

COAD-AA-3845
            *CpG->T   1.39e-04  139.3/Mb  (relative = 6.44)
    *Cp(A/C/T)->mut   1.36e-05   13.6/Mb  (relative = 0.63)
             A->mut   8.63e-06    8.6/Mb  (relative = 0.40)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   2.89e-06    2.9/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.16e-05   21.6/Mb  (relative = 1.00)

COAD-AA-3846
            *CpG->T   1.50e-05   15.0/Mb  (relative = 6.23)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.57)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.48)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.24)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.40e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3848
            *CpG->T   2.59e-05   25.9/Mb  (relative = 7.43)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3850
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.59)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.63)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.32)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-3851
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.29)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.49)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.40)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.37e-06    2.4/Mb  (relative = 1.00)

COAD-AA-3852
            *CpG->T   2.53e-05   25.3/Mb  (relative = 7.13)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.77)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.55e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3854
            *CpG->T   2.82e-05   28.2/Mb  (relative = 7.80)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.64)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.37)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.62e-06    3.6/Mb  (relative = 1.00)

COAD-AA-3855
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.09)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.52)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.25)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.33)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.48e-06    3.5/Mb  (relative = 1.00)

COAD-AA-3856
            *CpG->T   1.04e-05   10.4/Mb  (relative = 6.70)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.47)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 1.12)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3858
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.47)
    *Cp(A/C/T)->mut   5.05e-07    0.5/Mb  (relative = 0.33)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.76)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.30)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3860
            *CpG->T   4.60e-06    4.6/Mb  (relative = 3.89)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.73)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.46)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.03)
              Total   1.18e-06    1.2/Mb  (relative = 1.00)

COAD-AA-3864
            *CpG->T   6.42e-04  641.6/Mb  (relative = 10.02)
    *Cp(A/C/T)->mut   3.25e-05   32.5/Mb  (relative = 0.51)
             A->mut   1.38e-05   13.8/Mb  (relative = 0.22)
        *CpG->(G/A)   8.06e-06    8.1/Mb  (relative = 0.13)
         indel+null   5.29e-06    5.3/Mb  (relative = 0.08)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   6.40e-05   64.0/Mb  (relative = 1.00)

COAD-AA-3866
            *CpG->T   2.24e-05   22.4/Mb  (relative = 7.42)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.79)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.13)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.57)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.02e-06    3.0/Mb  (relative = 1.00)

COAD-AA-3867
            *CpG->T   1.61e-05   16.1/Mb  (relative = 6.05)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.49)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.61)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3869
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.29)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.75)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3870
            *CpG->T   2.36e-05   23.6/Mb  (relative = 7.63)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.68)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.24)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3872
            *CpG->T   7.48e-06    7.5/Mb  (relative = 4.95)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.81)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.20)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

COAD-AA-3875
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.75)
             A->mut   8.77e-07    0.9/Mb  (relative = 0.27)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3877
            *CpG->T   2.17e-04  216.9/Mb  (relative = 8.59)
    *Cp(A/C/T)->mut   1.25e-05   12.5/Mb  (relative = 0.49)
             A->mut   8.43e-06    8.4/Mb  (relative = 0.33)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.16)
         indel+null   2.73e-06    2.7/Mb  (relative = 0.11)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.52e-05   25.2/Mb  (relative = 1.00)

COAD-AA-3930
            *CpG->T   1.90e-05   19.0/Mb  (relative = 5.16)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.65)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.48)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3939
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.07)
    *Cp(A/C/T)->mut   1.80e-06    1.8/Mb  (relative = 0.55)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.33)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.35)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.25e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3941
            *CpG->T   2.59e-05   25.9/Mb  (relative = 8.20)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.69)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.19)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3947
            *CpG->T   2.25e-04  225.0/Mb  (relative = 5.59)
    *Cp(A/C/T)->mut   2.60e-05   26.0/Mb  (relative = 0.65)
             A->mut   1.58e-05   15.8/Mb  (relative = 0.39)
        *CpG->(G/A)   8.63e-06    8.6/Mb  (relative = 0.21)
         indel+null   7.23e-06    7.2/Mb  (relative = 0.18)
        double_null   1.32e-07    0.1/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-3949
            *CpG->T   1.54e-04  154.2/Mb  (relative = 7.18)
    *Cp(A/C/T)->mut   1.39e-05   13.9/Mb  (relative = 0.65)
             A->mut   8.30e-06    8.3/Mb  (relative = 0.39)
        *CpG->(G/A)   6.91e-06    6.9/Mb  (relative = 0.32)
         indel+null   1.91e-06    1.9/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.15e-05   21.5/Mb  (relative = 1.00)

COAD-AA-3952
            *CpG->T   1.15e-05   11.5/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.68)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.28)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.54)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.14e-06    2.1/Mb  (relative = 1.00)

COAD-AA-3955
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.46)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.80)
             A->mut   1.62e-06    1.6/Mb  (relative = 0.51)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 1.09)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

COAD-AA-3956
            *CpG->T   2.47e-05   24.7/Mb  (relative = 6.66)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.70)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.40)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.15)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

COAD-AA-3966
            *CpG->T   1.46e-04  145.6/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.62e-05   16.2/Mb  (relative = 0.55)
             A->mut   1.59e-05   15.9/Mb  (relative = 0.54)
        *CpG->(G/A)   5.75e-06    5.8/Mb  (relative = 0.20)
         indel+null   5.52e-06    5.5/Mb  (relative = 0.19)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.94e-05   29.4/Mb  (relative = 1.00)

COAD-AA-3971
            *CpG->T   6.91e-06    6.9/Mb  (relative = 3.50)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.66)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.58)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.38)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3972
            *CpG->T   1.90e-05   19.0/Mb  (relative = 7.04)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.62)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3973
            *CpG->T   1.38e-05   13.8/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.16)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 1.06)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.23)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AA-3975
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.73)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.61)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.57)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

COAD-AA-3976
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.27e-06    2.3/Mb  (relative = 1.00)

COAD-AA-3977
            *CpG->T   4.51e-04  451.1/Mb  (relative = 4.71)
    *Cp(A/C/T)->mut   8.84e-05   88.4/Mb  (relative = 0.92)
             A->mut   3.72e-05   37.2/Mb  (relative = 0.39)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.04)
         indel+null   1.10e-05   11.0/Mb  (relative = 0.12)
        double_null   4.60e-07    0.5/Mb  (relative = 0.00)
              Total   9.58e-05   95.8/Mb  (relative = 1.00)

COAD-AA-3979
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.52)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.57)
             A->mut   1.75e-06    1.8/Mb  (relative = 0.44)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.29)
         indel+null   9.86e-07    1.0/Mb  (relative = 0.25)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.95e-06    3.9/Mb  (relative = 1.00)

COAD-AA-3980
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.47)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.47)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   8.55e-07    0.9/Mb  (relative = 0.33)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

COAD-AA-3982
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.83)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.38)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-3984
            *CpG->T   5.93e-04  593.3/Mb  (relative = 5.65)
    *Cp(A/C/T)->mut   7.36e-05   73.6/Mb  (relative = 0.70)
             A->mut   5.19e-05   51.9/Mb  (relative = 0.49)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 0.04)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.11)
        double_null   2.63e-07    0.3/Mb  (relative = 0.00)
              Total   1.05e-04  105.0/Mb  (relative = 1.00)

COAD-AA-3986
            *CpG->T   1.78e-05   17.8/Mb  (relative = 9.04)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.55)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

COAD-AA-3989
            *CpG->T   1.96e-05   19.6/Mb  (relative = 6.33)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.54)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.26)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.37)
         indel+null   7.56e-07    0.8/Mb  (relative = 0.24)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.09e-06    3.1/Mb  (relative = 1.00)

COAD-AA-3994
            *CpG->T   3.51e-05   35.1/Mb  (relative = 7.57)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.64)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.20)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.50)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.13)
        double_null   6.58e-08    0.1/Mb  (relative = 0.01)
              Total   4.64e-06    4.6/Mb  (relative = 1.00)

COAD-AA-A004
            *CpG->T   1.15e-05   11.5/Mb  (relative = 6.36)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.45)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.81e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00A
            *CpG->T   5.25e-05   52.5/Mb  (relative = 4.67)
    *Cp(A/C/T)->mut   4.27e-06    4.3/Mb  (relative = 0.38)
             A->mut   9.25e-06    9.2/Mb  (relative = 0.82)
        *CpG->(G/A)   3.99e-06    4.0/Mb  (relative = 0.35)
         indel+null   1.76e-06    1.8/Mb  (relative = 0.16)
        double_null   3.45e-08    0.0/Mb  (relative = 0.00)
              Total   1.12e-05   11.2/Mb  (relative = 1.00)

COAD-AA-A00D
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.39)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.28)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.38)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.76e-06    1.8/Mb  (relative = 1.00)

COAD-AA-A00E
            *CpG->T   9.37e-05   93.7/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.07e-05   10.7/Mb  (relative = 0.66)
             A->mut   9.94e-06    9.9/Mb  (relative = 0.62)
        *CpG->(G/A)   4.65e-06    4.7/Mb  (relative = 0.29)
         indel+null   1.21e-06    1.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.61e-05   16.1/Mb  (relative = 1.00)

COAD-AA-A00F
            *CpG->T   9.96e-06   10.0/Mb  (relative = 9.03)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.03)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

COAD-AA-A00J
            *CpG->T   1.51e-04  151.5/Mb  (relative = 5.11)
    *Cp(A/C/T)->mut   2.26e-05   22.6/Mb  (relative = 0.76)
             A->mut   1.49e-05   14.9/Mb  (relative = 0.50)
        *CpG->(G/A)   1.06e-05   10.6/Mb  (relative = 0.36)
         indel+null   3.62e-06    3.6/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.97e-05   29.7/Mb  (relative = 1.00)

COAD-AA-A00K
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.39)
    *Cp(A/C/T)->mut   2.59e-06    2.6/Mb  (relative = 0.81)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.35)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.86e-07    0.6/Mb  (relative = 0.18)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.21e-06    3.2/Mb  (relative = 1.00)

COAD-AA-A00L
            *CpG->T   1.33e-05   13.3/Mb  (relative = 8.38)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.77)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.26)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.42)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A00N
            *CpG->T   7.20e-04  720.4/Mb  (relative = 6.32)
    *Cp(A/C/T)->mut   7.55e-05   75.5/Mb  (relative = 0.66)
             A->mut   5.32e-05   53.2/Mb  (relative = 0.47)
        *CpG->(G/A)   3.45e-06    3.5/Mb  (relative = 0.03)
         indel+null   1.17e-05   11.7/Mb  (relative = 0.10)
        double_null   6.90e-07    0.7/Mb  (relative = 0.01)
              Total   1.14e-04  114.1/Mb  (relative = 1.00)

COAD-AA-A00O
            *CpG->T   1.09e-05   10.9/Mb  (relative = 5.64)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.71)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.42)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A00Q
            *CpG->T   1.06e-05   10.6/Mb  (relative = 12.84)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.17)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.80)
         indel+null         00    0.0/Mb  (relative = 0.00)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00R
            *CpG->T   5.51e-05   55.1/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   6.48e-06    6.5/Mb  (relative = 0.64)
             A->mut   6.88e-06    6.9/Mb  (relative = 0.68)
        *CpG->(G/A)   2.66e-06    2.7/Mb  (relative = 0.26)
         indel+null   8.28e-07    0.8/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.02e-05   10.2/Mb  (relative = 1.00)

COAD-AA-A00U
            *CpG->T   1.46e-05   14.6/Mb  (relative = 6.62)
    *Cp(A/C/T)->mut   1.37e-06    1.4/Mb  (relative = 0.62)
             A->mut   1.11e-06    1.1/Mb  (relative = 0.50)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.41e-07    0.2/Mb  (relative = 0.11)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.21e-06    2.2/Mb  (relative = 1.00)

COAD-AA-A00W
            *CpG->T   7.31e-06    7.3/Mb  (relative = 8.83)
    *Cp(A/C/T)->mut   3.81e-07    0.4/Mb  (relative = 0.46)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.28e-07    0.8/Mb  (relative = 1.00)

COAD-AA-A00Z
            *CpG->T   9.96e-06   10.0/Mb  (relative = 10.32)
    *Cp(A/C/T)->mut   5.34e-07    0.5/Mb  (relative = 0.55)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.04)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   9.66e-07    1.0/Mb  (relative = 1.00)

COAD-AA-A010
            *CpG->T   8.59e-04  859.1/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.86e-04  186.4/Mb  (relative = 0.94)
             A->mut   8.65e-05   86.5/Mb  (relative = 0.44)
        *CpG->(G/A)   1.09e-05   10.9/Mb  (relative = 0.05)
         indel+null   2.07e-05   20.7/Mb  (relative = 0.10)
        double_null   1.38e-06    1.4/Mb  (relative = 0.01)
              Total   1.99e-04  198.9/Mb  (relative = 1.00)

COAD-AA-A017
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.02)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.64)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.58e-06    1.6/Mb  (relative = 1.00)

COAD-AA-A01D
            *CpG->T   1.78e-05   17.8/Mb  (relative = 4.48)
    *Cp(A/C/T)->mut   3.61e-06    3.6/Mb  (relative = 0.91)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.39)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.72)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.98e-06    4.0/Mb  (relative = 1.00)

COAD-AA-A01F
            *CpG->T   1.73e-05   17.3/Mb  (relative = 10.43)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.28)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.46)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.80)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.66e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01G
            *CpG->T   1.46e-05   14.6/Mb  (relative = 8.65)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.63)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.25)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.39)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.69e-06    1.7/Mb  (relative = 1.00)

COAD-AA-A01I
            *CpG->T   1.84e-05   18.4/Mb  (relative = 6.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.78)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.70e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A01K
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.41)
    *Cp(A/C/T)->mut   3.68e-06    3.7/Mb  (relative = 0.95)
             A->mut   2.16e-06    2.2/Mb  (relative = 0.56)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.30)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.08)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.88e-06    3.9/Mb  (relative = 1.00)

COAD-AA-A01P
            *CpG->T   8.11e-05   81.1/Mb  (relative = 6.46)
    *Cp(A/C/T)->mut   7.72e-06    7.7/Mb  (relative = 0.62)
             A->mut   6.07e-06    6.1/Mb  (relative = 0.48)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.14)
         indel+null   1.35e-06    1.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.26e-05   12.6/Mb  (relative = 1.00)

COAD-AA-A01Q
            *CpG->T   7.44e-05   74.4/Mb  (relative = 3.68)
    *Cp(A/C/T)->mut   8.70e-06    8.7/Mb  (relative = 0.43)
             A->mut   2.01e-05   20.1/Mb  (relative = 0.99)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.07)
         indel+null   2.41e-06    2.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.02e-05   20.2/Mb  (relative = 1.00)

COAD-AA-A01R
            *CpG->T   3.89e-04  389.0/Mb  (relative = 9.68)
    *Cp(A/C/T)->mut   1.76e-05   17.6/Mb  (relative = 0.44)
             A->mut   1.25e-05   12.5/Mb  (relative = 0.31)
        *CpG->(G/A)   4.60e-06    4.6/Mb  (relative = 0.11)
         indel+null   3.52e-06    3.5/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.00)
              Total   4.02e-05   40.2/Mb  (relative = 1.00)

COAD-AA-A01S
            *CpG->T   9.78e-06    9.8/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.77)
             A->mut   2.70e-07    0.3/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

COAD-AA-A01T
            *CpG->T   1.32e-05   13.2/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.80)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.37)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.45)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A01V
            *CpG->T   2.01e-05   20.1/Mb  (relative = 6.45)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 0.76)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.32)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.18)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.12e-06    3.1/Mb  (relative = 1.00)

COAD-AA-A01X
            *CpG->T   1.55e-05   15.5/Mb  (relative = 10.50)
    *Cp(A/C/T)->mut   7.22e-07    0.7/Mb  (relative = 0.49)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.39)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A01Z
            *CpG->T   2.19e-05   21.9/Mb  (relative = 8.64)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.21)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.53e-06    2.5/Mb  (relative = 1.00)

COAD-AA-A022
            *CpG->T   2.13e-04  212.9/Mb  (relative = 7.15)
    *Cp(A/C/T)->mut   1.82e-05   18.2/Mb  (relative = 0.61)
             A->mut   9.65e-06    9.6/Mb  (relative = 0.32)
        *CpG->(G/A)   5.18e-06    5.2/Mb  (relative = 0.17)
         indel+null   4.27e-06    4.3/Mb  (relative = 0.14)
        double_null   6.58e-08    0.1/Mb  (relative = 0.00)
              Total   2.98e-05   29.8/Mb  (relative = 1.00)

COAD-AA-A024
            *CpG->T   1.04e-05   10.4/Mb  (relative = 5.34)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.67)
             A->mut   6.07e-07    0.6/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.30)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.22)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A029
            *CpG->T   1.55e-05   15.5/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.79)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.30)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.43)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

COAD-AA-A02F
            *CpG->T   1.04e-05   10.4/Mb  (relative = 7.00)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.59)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.16)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

COAD-AA-A02H
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.94)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.64)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

COAD-AA-A02J
            *CpG->T   1.73e-05   17.3/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   3.03e-06    3.0/Mb  (relative = 0.89)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.24)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.25e-07    0.6/Mb  (relative = 0.18)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A02O
            *CpG->T   4.26e-05   42.6/Mb  (relative = 9.45)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.51)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.30)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.13)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   4.50e-06    4.5/Mb  (relative = 1.00)

COAD-AA-A02W
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.42)
    *Cp(A/C/T)->mut   2.24e-06    2.2/Mb  (relative = 0.81)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.29)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.63)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.12)
        double_null   6.58e-08    0.1/Mb  (relative = 0.02)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

COAD-AA-A02Y
            *CpG->T   2.24e-05   22.4/Mb  (relative = 6.63)
    *Cp(A/C/T)->mut   2.53e-06    2.5/Mb  (relative = 0.75)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.22)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03F
            *CpG->T   2.82e-05   28.2/Mb  (relative = 8.33)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.60)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.28)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.85)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

COAD-AA-A03J
            *CpG->T   1.67e-05   16.7/Mb  (relative = 7.69)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.37)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

COAD-AY-4070
            *CpG->T   1.38e-05   13.8/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   2.45e-06    2.5/Mb  (relative = 0.82)
             A->mut   1.48e-06    1.5/Mb  (relative = 0.50)
        *CpG->(G/A)   4.03e-06    4.0/Mb  (relative = 1.35)
         indel+null   9.86e-08    0.1/Mb  (relative = 0.03)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

COAD-AY-4071
            *CpG->T   1.32e-05   13.2/Mb  (relative = 4.85)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.89e-06    1.9/Mb  (relative = 0.69)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.21)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.73e-06    2.7/Mb  (relative = 1.00)

READ-AF-2689
            *CpG->T   3.99e-06    4.0/Mb  (relative = 2.57)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.64)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.85)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.43)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.55e-06    1.6/Mb  (relative = 1.00)

READ-AF-2691
            *CpG->T   8.64e-06    8.6/Mb  (relative = 4.32)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.95)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.38)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AF-2692
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.78)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.81)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.34)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AF-3400
            *CpG->T   4.65e-06    4.7/Mb  (relative = 7.49)
    *Cp(A/C/T)->mut   3.05e-07    0.3/Mb  (relative = 0.49)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.56)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.11)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   6.21e-07    0.6/Mb  (relative = 1.00)

READ-AF-3913
            *CpG->T   1.09e-05   10.9/Mb  (relative = 3.78)
    *Cp(A/C/T)->mut   2.74e-06    2.7/Mb  (relative = 0.95)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.35)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.89e-06    2.9/Mb  (relative = 1.00)

READ-AG-3574
            *CpG->T   8.64e-06    8.6/Mb  (relative = 8.08)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.71)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.33)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.07e-06    1.1/Mb  (relative = 1.00)

READ-AG-3575
            *CpG->T   1.13e-05   11.3/Mb  (relative = 7.62)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.52)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.45)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3578
            *CpG->T   5.98e-06    6.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   4.58e-07    0.5/Mb  (relative = 0.51)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.47)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.74)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   8.97e-07    0.9/Mb  (relative = 1.00)

READ-AG-3580
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.43)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.19)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3581
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.89)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.80)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 1.07)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.24e-06    1.2/Mb  (relative = 1.00)

READ-AG-3582
            *CpG->T   7.31e-06    7.3/Mb  (relative = 7.31)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.61)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 1.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3583
            *CpG->T   1.40e-05   14.0/Mb  (relative = 8.79)
    *Cp(A/C/T)->mut   8.39e-07    0.8/Mb  (relative = 0.53)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.22)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.76e-07    0.3/Mb  (relative = 0.17)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.59e-06    1.6/Mb  (relative = 1.00)

READ-AG-3584
            *CpG->T   6.64e-06    6.6/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.76)
             A->mut   2.78e-07    0.3/Mb  (relative = 0.28)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.00e-06    1.0/Mb  (relative = 1.00)

READ-AG-3586
            *CpG->T   7.31e-06    7.3/Mb  (relative = 5.30)
    *Cp(A/C/T)->mut   9.15e-07    0.9/Mb  (relative = 0.66)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.50)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.48)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.38e-06    1.4/Mb  (relative = 1.00)

READ-AG-3587
            *CpG->T   1.79e-05   17.9/Mb  (relative = 10.40)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.44)
             A->mut   5.56e-07    0.6/Mb  (relative = 0.32)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-3593
            *CpG->T   7.97e-06    8.0/Mb  (relative = 3.99)
    *Cp(A/C/T)->mut   1.60e-06    1.6/Mb  (relative = 0.80)
             A->mut   1.32e-06    1.3/Mb  (relative = 0.66)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.33)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.00e-06    2.0/Mb  (relative = 1.00)

READ-AG-3594
            *CpG->T   9.30e-06    9.3/Mb  (relative = 8.99)
    *Cp(A/C/T)->mut   6.10e-07    0.6/Mb  (relative = 0.59)
             A->mut   2.09e-07    0.2/Mb  (relative = 0.20)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.72e-07    0.2/Mb  (relative = 0.17)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.03e-06    1.0/Mb  (relative = 1.00)

READ-AG-3598
            *CpG->T   1.33e-05   13.3/Mb  (relative = 7.01)
    *Cp(A/C/T)->mut   1.45e-06    1.4/Mb  (relative = 0.76)
             A->mut   7.65e-07    0.8/Mb  (relative = 0.40)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.70)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.90e-06    1.9/Mb  (relative = 1.00)

READ-AG-3599
            *CpG->T   1.66e-05   16.6/Mb  (relative = 9.26)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.37)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.04)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3600
            *CpG->T   1.33e-05   13.3/Mb  (relative = 5.14)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.74)
             A->mut   1.46e-06    1.5/Mb  (relative = 0.56)
        *CpG->(G/A)   1.99e-06    2.0/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.59e-06    2.6/Mb  (relative = 1.00)

READ-AG-3601
            *CpG->T   1.40e-05   14.0/Mb  (relative = 5.32)
    *Cp(A/C/T)->mut   1.98e-06    2.0/Mb  (relative = 0.76)
             A->mut   1.81e-06    1.8/Mb  (relative = 0.69)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.03)
        double_null   3.45e-08    0.0/Mb  (relative = 0.01)
              Total   2.62e-06    2.6/Mb  (relative = 1.00)

READ-AG-3602
            *CpG->T   1.13e-05   11.3/Mb  (relative = 10.23)
    *Cp(A/C/T)->mut   7.63e-07    0.8/Mb  (relative = 0.69)
             A->mut   1.39e-07    0.1/Mb  (relative = 0.13)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.60)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.10e-06    1.1/Mb  (relative = 1.00)

READ-AG-3605
            *CpG->T   5.98e-06    6.0/Mb  (relative = 5.10)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.91)
             A->mut   4.87e-07    0.5/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.17e-06    1.2/Mb  (relative = 1.00)

READ-AG-3608
            *CpG->T   1.66e-05   16.6/Mb  (relative = 11.20)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.46)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.23)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.48e-06    1.5/Mb  (relative = 1.00)

READ-AG-3609
            *CpG->T   1.06e-05   10.6/Mb  (relative = 5.05)
    *Cp(A/C/T)->mut   1.75e-06    1.8/Mb  (relative = 0.83)
             A->mut   1.25e-06    1.3/Mb  (relative = 0.59)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.63)
         indel+null   3.45e-08    0.0/Mb  (relative = 0.02)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   2.10e-06    2.1/Mb  (relative = 1.00)

READ-AG-3611
            *CpG->T   9.96e-06   10.0/Mb  (relative = 7.41)
    *Cp(A/C/T)->mut   6.87e-07    0.7/Mb  (relative = 0.51)
             A->mut   6.95e-07    0.7/Mb  (relative = 0.52)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.99)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-3612
            *CpG->T   1.13e-05   11.3/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.07e-06    1.1/Mb  (relative = 0.60)
             A->mut   8.34e-07    0.8/Mb  (relative = 0.47)
        *CpG->(G/A)   3.32e-06    3.3/Mb  (relative = 1.85)
         indel+null   1.38e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-3726
            *CpG->T   1.67e-05   16.7/Mb  (relative = 4.49)
    *Cp(A/C/T)->mut   3.25e-06    3.2/Mb  (relative = 0.87)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.38)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.31)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.13)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.72e-06    3.7/Mb  (relative = 1.00)

READ-AG-3727
            *CpG->T   1.90e-05   19.0/Mb  (relative = 8.49)
    *Cp(A/C/T)->mut   1.01e-06    1.0/Mb  (relative = 0.45)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.36)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.24e-06    2.2/Mb  (relative = 1.00)

READ-AG-3878
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.10)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.57)
             A->mut   5.40e-07    0.5/Mb  (relative = 0.25)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.27)
         indel+null   5.59e-07    0.6/Mb  (relative = 0.26)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.17e-06    2.2/Mb  (relative = 1.00)

READ-AG-3881
            *CpG->T   1.55e-05   15.5/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.61)
             A->mut   1.21e-06    1.2/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.47)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.47e-06    2.5/Mb  (relative = 1.00)

READ-AG-3882
            *CpG->T   1.32e-05   13.2/Mb  (relative = 7.06)
    *Cp(A/C/T)->mut   1.44e-06    1.4/Mb  (relative = 0.77)
             A->mut   3.37e-07    0.3/Mb  (relative = 0.18)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.31)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.87e-06    1.9/Mb  (relative = 1.00)

READ-AG-3883
            *CpG->T   2.30e-05   23.0/Mb  (relative = 7.14)
    *Cp(A/C/T)->mut   2.17e-06    2.2/Mb  (relative = 0.67)
             A->mut   9.44e-07    0.9/Mb  (relative = 0.29)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.22e-06    3.2/Mb  (relative = 1.00)

READ-AG-3887
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.64)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.61)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.91)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.09)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.91e-06    1.9/Mb  (relative = 1.00)

READ-AG-3890
            *CpG->T   5.75e-06    5.8/Mb  (relative = 2.78)
    *Cp(A/C/T)->mut   2.38e-06    2.4/Mb  (relative = 1.15)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.49)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.64e-07    0.2/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.07e-06    2.1/Mb  (relative = 1.00)

READ-AG-3892
            *CpG->T   2.46e-04  246.3/Mb  (relative = 4.02)
    *Cp(A/C/T)->mut   5.10e-05   51.0/Mb  (relative = 0.83)
             A->mut   2.99e-05   29.9/Mb  (relative = 0.49)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.02)
         indel+null   9.07e-06    9.1/Mb  (relative = 0.15)
        double_null   1.97e-07    0.2/Mb  (relative = 0.00)
              Total   6.12e-05   61.2/Mb  (relative = 1.00)

READ-AG-3893
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.23)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.91)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.40)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.40)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.86e-06    2.9/Mb  (relative = 1.00)

READ-AG-3894
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.42)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.44)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   3.62e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.60e-06    2.6/Mb  (relative = 1.00)

READ-AG-3896
            *CpG->T   1.73e-05   17.3/Mb  (relative = 6.48)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.70)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-3898
            *CpG->T   1.67e-05   16.7/Mb  (relative = 6.34)
    *Cp(A/C/T)->mut   2.02e-06    2.0/Mb  (relative = 0.77)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.07)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.63e-06    2.6/Mb  (relative = 1.00)

READ-AG-3901
            *CpG->T   1.27e-05   12.7/Mb  (relative = 8.37)
    *Cp(A/C/T)->mut   8.66e-07    0.9/Mb  (relative = 0.57)
             A->mut   4.72e-07    0.5/Mb  (relative = 0.31)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.38)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.51e-06    1.5/Mb  (relative = 1.00)

READ-AG-3902
            *CpG->T   1.32e-05   13.2/Mb  (relative = 3.91)
    *Cp(A/C/T)->mut   2.09e-06    2.1/Mb  (relative = 0.62)
             A->mut   2.36e-06    2.4/Mb  (relative = 0.70)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.17)
         indel+null   4.93e-07    0.5/Mb  (relative = 0.15)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.39e-06    3.4/Mb  (relative = 1.00)

READ-AG-3909
            *CpG->T   1.44e-05   14.4/Mb  (relative = 5.76)
    *Cp(A/C/T)->mut   2.31e-06    2.3/Mb  (relative = 0.92)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.27)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.11)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.50e-06    2.5/Mb  (relative = 1.00)

READ-AG-3999
            *CpG->T   2.01e-05   20.1/Mb  (relative = 7.56)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.57)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.41)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.22)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.66e-06    2.7/Mb  (relative = 1.00)

READ-AG-4001
            *CpG->T   2.53e-05   25.3/Mb  (relative = 8.46)
    *Cp(A/C/T)->mut   1.66e-06    1.7/Mb  (relative = 0.55)
             A->mut   6.74e-07    0.7/Mb  (relative = 0.23)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.19)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.14)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.99e-06    3.0/Mb  (relative = 1.00)

READ-AG-4005
            *CpG->T   1.61e-05   16.1/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.58)
             A->mut   1.15e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.19)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.76e-06    2.8/Mb  (relative = 1.00)

READ-AG-4007
            *CpG->T   3.28e-05   32.8/Mb  (relative = 7.73)
    *Cp(A/C/T)->mut   2.89e-06    2.9/Mb  (relative = 0.68)
             A->mut   1.42e-06    1.4/Mb  (relative = 0.33)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.14)
         indel+null   2.96e-07    0.3/Mb  (relative = 0.07)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   4.24e-06    4.2/Mb  (relative = 1.00)

READ-AG-4008
            *CpG->T   1.32e-05   13.2/Mb  (relative = 6.49)
    *Cp(A/C/T)->mut   1.23e-06    1.2/Mb  (relative = 0.60)
             A->mut   1.01e-06    1.0/Mb  (relative = 0.50)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.85)
         indel+null   1.32e-07    0.1/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-4015
            *CpG->T   1.50e-05   15.0/Mb  (relative = 5.83)
    *Cp(A/C/T)->mut   1.88e-06    1.9/Mb  (relative = 0.73)
             A->mut   1.08e-06    1.1/Mb  (relative = 0.42)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.56e-06    2.6/Mb  (relative = 1.00)

READ-AG-A002
            *CpG->T   1.44e-03  1444.0/Mb  (relative = 4.62)
    *Cp(A/C/T)->mut   3.17e-04  317.2/Mb  (relative = 1.01)
             A->mut   9.14e-05   91.4/Mb  (relative = 0.29)
        *CpG->(G/A)   2.24e-05   22.4/Mb  (relative = 0.07)
         indel+null   3.50e-05   35.0/Mb  (relative = 0.11)
        double_null   4.13e-06    4.1/Mb  (relative = 0.01)
              Total   3.13e-04  312.7/Mb  (relative = 1.00)

READ-AG-A008
            *CpG->T   9.30e-06    9.3/Mb  (relative = 6.92)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.91)
             A->mut   4.17e-07    0.4/Mb  (relative = 0.31)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   1.03e-07    0.1/Mb  (relative = 0.08)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.34e-06    1.3/Mb  (relative = 1.00)

READ-AG-A00C
            *CpG->T   1.26e-05   12.6/Mb  (relative = 7.32)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.75)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.20)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.77)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null   3.45e-08    0.0/Mb  (relative = 0.02)
              Total   1.72e-06    1.7/Mb  (relative = 1.00)

READ-AG-A00H
            *CpG->T   9.78e-06    9.8/Mb  (relative = 5.51)
    *Cp(A/C/T)->mut   1.59e-06    1.6/Mb  (relative = 0.89)
             A->mut   4.05e-07    0.4/Mb  (relative = 0.23)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.65)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.13)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.78e-06    1.8/Mb  (relative = 1.00)

READ-AG-A00Y
            *CpG->T   7.97e-06    8.0/Mb  (relative = 2.85)
    *Cp(A/C/T)->mut   1.22e-06    1.2/Mb  (relative = 0.44)
             A->mut   9.04e-07    0.9/Mb  (relative = 0.32)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.48)
         indel+null   1.31e-06    1.3/Mb  (relative = 0.47)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.79e-06    2.8/Mb  (relative = 1.00)

READ-AG-A011
            *CpG->T   1.51e-05   15.1/Mb  (relative = 5.15)
    *Cp(A/C/T)->mut   1.91e-06    1.9/Mb  (relative = 0.65)
             A->mut   1.33e-06    1.3/Mb  (relative = 0.45)
        *CpG->(G/A)   2.80e-06    2.8/Mb  (relative = 0.95)
         indel+null   3.55e-07    0.4/Mb  (relative = 0.12)
        double_null   3.23e-08    0.0/Mb  (relative = 0.01)
              Total   2.94e-06    2.9/Mb  (relative = 1.00)

READ-AG-A014
            *CpG->T   1.51e-05   15.1/Mb  (relative = 4.42)
    *Cp(A/C/T)->mut   2.12e-06    2.1/Mb  (relative = 0.62)
             A->mut   1.59e-06    1.6/Mb  (relative = 0.47)
        *CpG->(G/A)   2.24e-06    2.2/Mb  (relative = 0.66)
         indel+null   6.13e-07    0.6/Mb  (relative = 0.18)
        double_null   6.46e-08    0.1/Mb  (relative = 0.02)
              Total   3.42e-06    3.4/Mb  (relative = 1.00)

READ-AG-A015
            *CpG->T   1.20e-05   12.0/Mb  (relative = 6.67)
    *Cp(A/C/T)->mut   1.30e-06    1.3/Mb  (relative = 0.72)
             A->mut   6.26e-07    0.6/Mb  (relative = 0.35)
        *CpG->(G/A)   1.33e-06    1.3/Mb  (relative = 0.74)
         indel+null   2.07e-07    0.2/Mb  (relative = 0.12)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.79e-06    1.8/Mb  (relative = 1.00)

READ-AG-A016
            *CpG->T   1.13e-05   11.3/Mb  (relative = 8.62)
    *Cp(A/C/T)->mut   9.92e-07    1.0/Mb  (relative = 0.76)
             A->mut   3.48e-07    0.3/Mb  (relative = 0.27)
        *CpG->(G/A)   6.64e-07    0.7/Mb  (relative = 0.51)
         indel+null   6.90e-08    0.1/Mb  (relative = 0.05)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.31e-06    1.3/Mb  (relative = 1.00)

READ-AG-A01L
            *CpG->T   2.02e-05   20.2/Mb  (relative = 10.24)
    *Cp(A/C/T)->mut   7.08e-07    0.7/Mb  (relative = 0.36)
             A->mut   3.32e-07    0.3/Mb  (relative = 0.17)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.23e-07    0.3/Mb  (relative = 0.16)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.97e-06    2.0/Mb  (relative = 1.00)

READ-AG-A01W
            *CpG->T   1.55e-05   15.5/Mb  (relative = 4.92)
    *Cp(A/C/T)->mut   2.96e-06    3.0/Mb  (relative = 0.94)
             A->mut   1.35e-06    1.3/Mb  (relative = 0.43)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.36)
         indel+null   1.97e-07    0.2/Mb  (relative = 0.06)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   3.16e-06    3.2/Mb  (relative = 1.00)

READ-AG-A01Y
            *CpG->T   1.09e-05   10.9/Mb  (relative = 4.96)
    *Cp(A/C/T)->mut   1.16e-06    1.2/Mb  (relative = 0.52)
             A->mut   1.55e-06    1.6/Mb  (relative = 0.70)
        *CpG->(G/A)   1.15e-06    1.2/Mb  (relative = 0.52)
         indel+null   2.30e-07    0.2/Mb  (relative = 0.10)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   2.20e-06    2.2/Mb  (relative = 1.00)

READ-AG-A020
            *CpG->T   1.27e-05   12.7/Mb  (relative = 6.53)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.56)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.38)
        *CpG->(G/A)         00    0.0/Mb  (relative = 0.00)
         indel+null   3.29e-07    0.3/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   1.94e-06    1.9/Mb  (relative = 1.00)

READ-AG-A025
            *CpG->T   1.73e-05   17.3/Mb  (relative = 7.40)
    *Cp(A/C/T)->mut   1.08e-06    1.1/Mb  (relative = 0.46)
             A->mut   8.09e-07    0.8/Mb  (relative = 0.35)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.25)
         indel+null   3.95e-07    0.4/Mb  (relative = 0.17)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   2.33e-06    2.3/Mb  (relative = 1.00)

READ-AG-A026
            *CpG->T   2.24e-05   22.4/Mb  (relative = 3.92)
    *Cp(A/C/T)->mut   5.05e-06    5.1/Mb  (relative = 0.88)
             A->mut   2.97e-06    3.0/Mb  (relative = 0.52)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.50)
         indel+null   5.26e-07    0.5/Mb  (relative = 0.09)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   5.72e-06    5.7/Mb  (relative = 1.00)

READ-AG-A02G
            *CpG->T   1.32e-05   13.2/Mb  (relative = 9.36)
    *Cp(A/C/T)->mut   5.78e-07    0.6/Mb  (relative = 0.41)
             A->mut   2.02e-07    0.2/Mb  (relative = 0.14)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.41)
         indel+null   2.63e-07    0.3/Mb  (relative = 0.19)
        double_null         00    0.0/Mb  (relative = 0.00)
              Total   1.41e-06    1.4/Mb  (relative = 1.00)

READ-AG-A02N
            *CpG->T   2.75e-04  275.1/Mb  (relative = 9.19)
    *Cp(A/C/T)->mut   1.21e-05   12.1/Mb  (relative = 0.40)
             A->mut   5.73e-06    5.7/Mb  (relative = 0.19)
        *CpG->(G/A)   2.88e-06    2.9/Mb  (relative = 0.10)
         indel+null   5.65e-06    5.7/Mb  (relative = 0.19)
        double_null   9.86e-08    0.1/Mb  (relative = 0.00)
              Total   2.99e-05   29.9/Mb  (relative = 1.00)

READ-AG-A02X
            *CpG->T   2.07e-05   20.7/Mb  (relative = 6.30)
    *Cp(A/C/T)->mut   1.95e-06    1.9/Mb  (relative = 0.59)
             A->mut   1.28e-06    1.3/Mb  (relative = 0.39)
        *CpG->(G/A)   1.73e-06    1.7/Mb  (relative = 0.53)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.14)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.29e-06    3.3/Mb  (relative = 1.00)

READ-AG-A032
            *CpG->T   8.63e-06    8.6/Mb  (relative = 4.23)
    *Cp(A/C/T)->mut   1.52e-06    1.5/Mb  (relative = 0.74)
             A->mut   7.42e-07    0.7/Mb  (relative = 0.36)
        *CpG->(G/A)   5.75e-07    0.6/Mb  (relative = 0.28)
         indel+null   4.27e-07    0.4/Mb  (relative = 0.21)
        double_null   3.29e-08    0.0/Mb  (relative = 0.02)
              Total   2.04e-06    2.0/Mb  (relative = 1.00)

READ-AG-A036
            *CpG->T   1.61e-05   16.1/Mb  (relative = 4.38)
    *Cp(A/C/T)->mut   2.60e-06    2.6/Mb  (relative = 0.71)
             A->mut   1.96e-06    2.0/Mb  (relative = 0.53)
        *CpG->(G/A)   2.30e-06    2.3/Mb  (relative = 0.63)
         indel+null   4.60e-07    0.5/Mb  (relative = 0.12)
        double_null   3.29e-08    0.0/Mb  (relative = 0.01)
              Total   3.68e-06    3.7/Mb  (relative = 1.00)

Cannot analyze silent/nonsilent ratios: required fields missing!

Running "classic" MutSig:
Scatter job 200: processing genes 17941 - 18030
Calculating significance of each gene.
Using projection method.
17941	ZNF789	6.121287e-01
17942	ZNF79	9.552821e-01
17943	ZNF790	3.057092e-01
17944	ZNF791	1.202147e-01
17945	ZNF792	7.416670e-01
17946	ZNF793	2.161707e-02
17947	ZNF799	8.160854e-01
17948	ZNF8	1
17949	ZNF80	1.575805e-01
17950	ZNF800	2.055380e-01
17951	ZNF804A	6.867725e-03
17952	ZNF804B	1.315983e-03
17953	ZNF808	1.970907e-02
17954	ZNF81	4.310273e-01
17955	ZNF813	9.381036e-01
17956	ZNF816A	1
17957	ZNF821	2.865451e-01
17958	ZNF823	7.823785e-01
17959	ZNF826	1.372396e-01
17960	ZNF827	7.208650e-02
17961	ZNF828	7.238972e-01
17962	ZNF829	1.137865e-01
17963	ZNF83	2.154889e-02
17964	ZNF830	6.883953e-01
17965	ZNF831	2.227895e-01
17966	ZNF835	1.740560e-01
17967	ZNF836	6.853568e-01
17968	ZNF839	9.771359e-01
17969	ZNF84	5.146025e-01
17970	ZNF846	1.217334e-01
17971	ZNF85	4.276780e-01
17972	ZNF862	9.799945e-01
17973	ZNF878	3.349278e-01
17974	ZNF880	2.427217e-01
17975	ZNF883	5.519695e-01
17976	ZNF91	4.548802e-02
17977	ZNF92	7.372528e-01
17978	ZNF93	6.260813e-01
17979	ZNF98	3.413775e-02
17980	ZNF99	3.789326e-03
17981	ZNFX1	7.613280e-01
17982	ZNHIT1	5.825824e-01
In gene ZNHIT2 the following bins exceed PROBCAP:
    READ-AG-3727	categ 6	N = 986     n = 1	mu =   2.96e-07
17983	ZNHIT2	4.587589e-01
17984	ZNHIT3	1
17985	ZNHIT6	6.768579e-02
17986	ZNRD1	1
17987	ZNRF1	1
17988	ZNRF2	1
17989	ZNRF3	1
17990	ZNRF4	9.166989e-01
17991	ZP1	3.154162e-01
17992	ZP2	3.089563e-01
17993	ZP3	2.428795e-01
17994	ZP4	1.280527e-01
17995	ZPBP	1.642963e-01
17996	ZPBP2	6.159160e-01
17997	ZPLD1	1.373610e-01
17998	ZRANB1	5.690587e-01
17999	ZRANB2	9.205942e-02
18000/18030 18000	ZRANB3	7.593720e-01
18001	ZRSR2	8.451162e-01
18002	ZSCAN1	5.988250e-01
18003	ZSCAN10	1
18004	ZSCAN16	4.109710e-01
18005	ZSCAN18	3.654297e-01
18006	ZSCAN2	5.352099e-01
18007	ZSCAN20	1.774232e-01
18008	ZSCAN21	7.218982e-01
18009	ZSCAN22	9.653641e-01
18010	ZSCAN29	3.276517e-01
18011	ZSCAN4	2.840038e-01
18012	ZSCAN5A	6.600934e-01
18013	ZSCAN5B	3.368074e-01
18014	ZSWIM1	3.820403e-01
18015	ZSWIM2	7.899653e-01
18016	ZSWIM3	1.047781e-01
18017	ZSWIM4	9.929493e-01
18018	ZSWIM5	9.569015e-01
18019	ZSWIM7	1
18020	ZUFSP	8.733688e-01
18021	ZW10	7.833730e-01
18022	ZWILCH	4.060343e-01
18023	ZWINT	5.868647e-02
18024	ZXDA	1.653876e-01
18025	ZXDB	1
18026	ZXDC	5.439121e-01
18027	ZYG11B	2.758140e-01
18028	ZYX	9.812719e-01
18029	ZZEF1	8.140296e-01
18030	ZZZ3	5.118180e-01
Done

Running MutSig 2:
Scatter job 200: processing genes 17941 - 18030
Running MutSig clustering v0.01 ;)
Sorting genes by total number of mutations....
Processing gene list...
ZNF99
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.848410e-02	ci left: 3.855995e-01	ci right 4.048615e-01	k: 3952	n:10000
Cons ci ratio: 5.091734e-03	ci left: 9.808076e-01	ci right 9.859052e-01	k: 9835	n:10000
KS ci ratio: 6.596015e-02	ci left: 2.523139e-01	ci right 2.696255e-01	k: 2609	n:10000
ZNF99   10000 perm   2 sec   (4557 perm/sec)   p_kst 2.609000e-01   p_cons 9.835000e-01   p_joint 3.952000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF99.20_3143_10000_0.2609_0.9835_0.3952.png
                gene_name: ZNF99
               theta_stop: 0.066 
                    nperm: 10000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.25 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.98 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.40 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 1 percent done.
ZNF804A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.969783e-02	ci left: 6.257775e-01	ci right 6.447437e-01	k: 6353	n:10000
Cons ci ratio: 6.526634e-02	ci left: 2.563695e-01	ci right 2.737676e-01	k: 2650	n:10000
KS ci ratio: 1.516905e-02	ci left: 8.630465e-01	ci right 8.763374e-01	k: 8698	n:10000
ZNF804A   10000 perm   2 sec   (4426 perm/sec)   p_kst 8.698000e-01   p_cons 2.650000e-01   p_joint 6.353000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF804A.16_3646_10000_0.8698_0.265_0.6353.png
                gene_name: ZNF804A
               theta_stop: 0.065 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.27 
                  p_joint: 0.64 
     ci_joint_bounds_left: 0.63 
    ci_joint_bounds_right: 0.64 

Current progress: 3 percent done.
ZNF804B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.909067e-02	ci left: 1.893422e-01	ci right 2.050346e-01	k: 1971	n:10000
Cons ci ratio: 5.418072e-02	ci left: 3.341893e-01	ci right 3.529019e-01	k: 3435	n:10000
KS ci ratio: 9.183970e-02	ci left: 1.469770e-01	ci right 1.612251e-01	k: 1540	n:10000
ZNF804B   10000 perm   2 sec   (4394 perm/sec)   p_kst 1.540000e-01   p_cons 3.435000e-01   p_joint 1.971000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF804B.15_4066_10000_0.154_0.3435_0.1971.png
                gene_name: ZNF804B
               theta_stop: 0.092 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.15 
       ci_ks_bounds_right: 0.16 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.21 

Current progress: 4 percent done.
ZZEF1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.684847e-02	ci left: 8.368400e-01	ci right 8.511590e-01	k: 8441	n:10000
Cons ci ratio: 1.964970e-02	ci left: 7.912118e-01	ci right 8.070136e-01	k: 7992	n:10000
KS ci ratio: 3.416137e-02	ci left: 5.585233e-01	ci right 5.780369e-01	k: 5683	n:10000
ZZEF1   10000 perm   3 sec   (3415 perm/sec)   p_kst 5.683000e-01   p_cons 7.992000e-01   p_joint 8.441000e-01

Outputting figure to mutsig2_images.part000000000200/ZZEF1.13_9106_10000_0.5683_0.7992_0.8441.png
                gene_name: ZZEF1
               theta_stop: 0.034 
                    nperm: 10000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.81 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.84 
    ci_joint_bounds_right: 0.85 

Current progress: 6 percent done.
ZNF831
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.733377e-02	ci left: 5.144559e-01	ci right 5.341300e-01	k: 5243	n:10000
Cons ci ratio: 3.277544e-02	ci left: 5.787803e-01	ci right 5.981681e-01	k: 5885	n:10000
KS ci ratio: 5.193970e-02	ci left: 3.533674e-01	ci right 3.723125e-01	k: 3628	n:10000
ZNF831   10000 perm   2 sec   (4052 perm/sec)   p_kst 3.628000e-01   p_cons 5.885000e-01   p_joint 5.243000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF831.11_5054_10000_0.3628_0.5885_0.5243.png
                gene_name: ZNF831
               theta_stop: 0.052 
                    nperm: 10000 
                     p_ks: 0.36 
        ci_ks_bounds_left: 0.35 
       ci_ks_bounds_right: 0.37 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 7 percent done.
ZNF91
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.314093e-02	ci left: 2.693338e-01	ci right 2.869956e-01	k: 2781	n:10000
Cons ci ratio: 5.031728e-02	ci left: 3.680851e-01	ci right 3.871862e-01	k: 3776	n:10000
KS ci ratio: 7.204855e-02	ci left: 2.201034e-01	ci right 2.366552e-01	k: 2283	n:10000
ZNF91   10000 perm   2 sec   (4774 perm/sec)   p_kst 2.283000e-01   p_cons 3.776000e-01   p_joint 2.781000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF91.11_3592_10000_0.2283_0.3776_0.2781.png
                gene_name: ZNF91
               theta_stop: 0.072 
                    nperm: 10000 
                     p_ks: 0.23 
        ci_ks_bounds_left: 0.22 
       ci_ks_bounds_right: 0.24 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.37 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 9 percent done.
ZNFX1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.565400e-02	ci left: 8.555948e-01	ci right 8.691933e-01	k: 8625	n:10000
KS ci ratio: 1.813674e-02	ci left: 8.160871e-01	ci right 8.311239e-01	k: 8237	n:10000
ZNFX1   10000 perm   2 sec   (4404 perm/sec)   p_kst 8.237000e-01   p_cons 8.625000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZNFX1.11_5809_10000_0.8237_0.8625_1.png
                gene_name: ZNFX1
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.82 
        ci_ks_bounds_left: 0.82 
       ci_ks_bounds_right: 0.83 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 10 percent done.
ZNF790
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.704991e-02	ci left: 6.681371e-01	ci right 6.865595e-01	k: 6774	n:10000
KS ci ratio: 1.517575e-02	ci left: 8.629443e-01	ci right 8.762395e-01	k: 8697	n:10000
ZNF790   10000 perm   2 sec   (5185 perm/sec)   p_kst 8.697000e-01   p_cons 6.774000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZNF790.10_1927_10000_0.8697_0.6774_1.png
                gene_name: ZNF790
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.87 
        ci_ks_bounds_left: 0.86 
       ci_ks_bounds_right: 0.88 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 12 percent done.
ZNF827
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.412657e-02	ci left: 5.590245e-01	ci right 5.785354e-01	k: 5688	n:10000
Cons ci ratio: 3.648931e-02	ci left: 5.258660e-01	ci right 5.455132e-01	k: 5357	n:10000
KS ci ratio: 5.848272e-02	ci left: 3.008425e-01	ci right 3.190683e-01	k: 3099	n:10000
ZNF827   10000 perm   2 sec   (4709 perm/sec)   p_kst 3.099000e-01   p_cons 5.357000e-01   p_joint 5.688000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF827.10_3286_10000_0.3099_0.5357_0.5688.png
                gene_name: ZNF827
               theta_stop: 0.058 
                    nperm: 10000 
                     p_ks: 0.31 
        ci_ks_bounds_left: 0.30 
       ci_ks_bounds_right: 0.32 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 13 percent done.
ZNF829
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.669845e-03	ci left: 9.836084e-01	ci right 9.883022e-01	k: 9861	n:10000
KS ci ratio: 1.064407e-02	ci left: 9.262689e-01	ci right 9.362781e-01	k: 9314	n:10000
ZNF829   10000 perm   2 sec   (6416 perm/sec)   p_kst 9.314000e-01   p_cons 9.861000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZNF829.10_1566_10000_0.9314_0.9861_1.png
                gene_name: ZNF829
               theta_stop: 0.011 
                    nperm: 10000 
                     p_ks: 0.93 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.98 
     ci_cons_bounds_right: 0.99 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 14 percent done.
ZNF836
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.834238e-02	ci left: 8.127337e-01	ci right 8.278793e-01	k: 8204	n:10000
KS ci ratio: 1.028188e-02	ci left: 9.307143e-01	ci right 9.404301e-01	k: 9357	n:10000
ZNF836   10000 perm   2 sec   (5652 perm/sec)   p_kst 9.357000e-01   p_cons 8.204000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZNF836.9_2823_10000_0.9357_0.8204_1.png
                gene_name: ZNF836
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.94 
        ci_ks_bounds_left: 0.93 
       ci_ks_bounds_right: 0.94 
                   p_cons: 0.82 
      ci_cons_bounds_left: 0.81 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 16 percent done.
ZNF98
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.427694e-02	ci left: 3.333947e-01	ci right 3.520970e-01	k: 3427	n:10000
Cons ci ratio: 4.163696e-02	ci left: 4.599781e-01	ci right 4.796395e-01	k: 4698	n:10000
KS ci ratio: 6.432495e-02	ci left: 2.620092e-01	ci right 2.795245e-01	k: 2707	n:10000
ZNF98   10000 perm   2 sec   (5447 perm/sec)   p_kst 2.707000e-01   p_cons 4.698000e-01   p_joint 3.427000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF98.9_1735_10000_0.2707_0.4698_0.3427.png
                gene_name: ZNF98
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.47 
      ci_cons_bounds_left: 0.46 
     ci_cons_bounds_right: 0.48 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 17 percent done.
ZNF808
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.763252e-02	ci left: 3.070909e-01	ci right 3.254162e-01	k: 3162	n:10000
Cons ci ratio: 7.252190e-02	ci left: 2.178334e-01	ci right 2.343265e-01	k: 2260	n:10000
KS ci ratio: 4.999771e-02	ci left: 3.710696e-01	ci right 3.902000e-01	k: 3806	n:10000
ZNF808   10000 perm   2 sec   (5331 perm/sec)   p_kst 3.806000e-01   p_cons 2.260000e-01   p_joint 3.162000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF808.8_2724_10000_0.3806_0.226_0.3162.png
                gene_name: ZNF808
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.38 
        ci_ks_bounds_left: 0.37 
       ci_ks_bounds_right: 0.39 
                   p_cons: 0.23 
      ci_cons_bounds_left: 0.22 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 19 percent done.
ZNF835
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.352295e-02	ci left: 8.874939e-01	ci right 8.996757e-01	k: 8937	n:10000
KS ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
ZNF835   10000 perm   2 sec   (6168 perm/sec)   p_kst 1   p_cons 8.937000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZNF835.8_1688_10000_1_0.8937_1.png
                gene_name: ZNF835
               theta_stop: 0.014 
                    nperm: 10000 
                     p_ks: 1 
        ci_ks_bounds_left: 1.00 
       ci_ks_bounds_right: 1 
                   p_cons: 0.89 
      ci_cons_bounds_left: 0.89 
     ci_cons_bounds_right: 0.90 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 20 percent done.
ZNHIT6
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.179233e-01	ci left: 9.360310e-02	ci right 1.054314e-01	k: 994	n:10000
Cons ci ratio: 1.506606e-01	ci left: 5.860517e-02	ci right 6.825107e-02	k: 633	n:10000
KS ci ratio: 7.793559e-02	ci left: 1.939715e-01	ci right 2.098025e-01	k: 2018	n:10000
ZNHIT6   10000 perm   2 sec   (5907 perm/sec)   p_kst 2.018000e-01   p_cons 6.330000e-02   p_joint 9.940000e-02

Joint ci ratio: 7.664826e-02	ci left: 1.111998e-01	ci right 1.201123e-01	k: 2312	n:20000
Cons ci ratio: 1.070774e-01	ci left: 5.942775e-02	ci right 6.620004e-02	k: 1255	n:20000
KS ci ratio: 5.479509e-02	ci left: 1.981367e-01	ci right 2.093496e-01	k: 4074	n:20000
ZNHIT6   20000 perm   4 sec   (5277 perm/sec)   p_kst 2.037000e-01   p_cons 6.275000e-02   p_joint 1.156000e-01

Joint ci ratio: 7.463866e-02	ci left: 8.104867e-02	ci right 8.736546e-02	k: 2525	n:30000
Cons ci ratio: 8.787778e-02	ci left: 5.946019e-02	ci right 6.495830e-02	k: 1865	n:30000
KS ci ratio: 4.426994e-02	ci left: 2.025925e-01	ci right 2.117976e-01	k: 6215	n:30000
ZNHIT6   30000 perm   6 sec   (5020 perm/sec)   p_kst 2.071667e-01   p_cons 6.216667e-02   p_joint 8.416667e-02

Outputting figure to mutsig2_images.part000000000200/ZNHIT6.8_1453_30000_0.20717_0.062167_0.084167.png
                gene_name: ZNHIT6
               theta_stop: 0.088 
                    nperm: 30000 
                     p_ks: 0.21 
        ci_ks_bounds_left: 0.20 
       ci_ks_bounds_right: 0.21 
                   p_cons: 0.062 
      ci_cons_bounds_left: 0.059 
     ci_cons_bounds_right: 0.065 
                  p_joint: 0.084 
     ci_joint_bounds_left: 0.081 
    ci_joint_bounds_right: 0.087 

Current progress: 22 percent done.
ZSCAN29
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.895871e-02	ci left: 6.374410e-01	ci right 6.562734e-01	k: 6469	n:10000
Cons ci ratio: 4.510603e-02	ci left: 4.204677e-01	ci right 4.399730e-01	k: 4302	n:10000
KS ci ratio: 1.885064e-02	ci left: 8.044048e-01	ci right 8.198129e-01	k: 8122	n:10000
ZSCAN29   10000 perm   2 sec   (5168 perm/sec)   p_kst 8.122000e-01   p_cons 4.302000e-01   p_joint 6.469000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN29.8_2579_10000_0.8122_0.4302_0.6469.png
                gene_name: ZSCAN29
               theta_stop: 0.045 
                    nperm: 10000 
                     p_ks: 0.81 
        ci_ks_bounds_left: 0.80 
       ci_ks_bounds_right: 0.82 
                   p_cons: 0.43 
      ci_cons_bounds_left: 0.42 
     ci_cons_bounds_right: 0.44 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 23 percent done.
ZNF83
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.019297e-02	ci left: 7.821871e-01	ci right 7.982435e-01	k: 7903	n:10000
Cons ci ratio: 4.189710e-03	ci left: 9.865389e-01	ci right 9.907693e-01	k: 9888	n:10000
KS ci ratio: 2.717994e-02	ci left: 6.660222e-01	ci right 6.844756e-01	k: 6753	n:10000
ZNF83   10000 perm   2 sec   (5772 perm/sec)   p_kst 6.753000e-01   p_cons 9.888000e-01   p_joint 7.903000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF83.7_1555_10000_0.6753_0.9888_0.7903.png
                gene_name: ZNF83
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.68 
        ci_ks_bounds_left: 0.67 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.99 
      ci_cons_bounds_left: 0.99 
     ci_cons_bounds_right: 0.99 
                  p_joint: 0.79 
     ci_joint_bounds_left: 0.78 
    ci_joint_bounds_right: 0.80 

Current progress: 25 percent done.
ZP2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.996185e-02	ci left: 4.804561e-01	ci right 5.001496e-01	k: 4903	n:10000
Cons ci ratio: 5.078065e-02	ci left: 3.638081e-01	ci right 3.828658e-01	k: 3733	n:10000
KS ci ratio: 5.711691e-02	ci left: 3.109600e-01	ci right 3.293449e-01	k: 3201	n:10000
ZP2   10000 perm   2 sec   (5546 perm/sec)   p_kst 3.201000e-01   p_cons 3.733000e-01   p_joint 4.903000e-01

Outputting figure to mutsig2_images.part000000000200/ZP2.7_2314_10000_0.3201_0.3733_0.4903.png
                gene_name: ZP2
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 26 percent done.
ZP4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.444600e-02	ci left: 3.320042e-01	ci right 3.506883e-01	k: 3413	n:10000
Cons ci ratio: 7.735992e-02	ci left: 1.963361e-01	ci right 2.122365e-01	k: 2042	n:10000
KS ci ratio: 5.442180e-02	ci left: 3.322029e-01	ci right 3.508895e-01	k: 3415	n:10000
ZP4   10000 perm   2 sec   (5494 perm/sec)   p_kst 3.415000e-01   p_cons 2.042000e-01   p_joint 3.413000e-01

Outputting figure to mutsig2_images.part000000000200/ZP4.7_1671_10000_0.3415_0.2042_0.3413.png
                gene_name: ZP4
               theta_stop: 0.077 
                    nperm: 10000 
                     p_ks: 0.34 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.35 
                   p_cons: 0.20 
      ci_cons_bounds_left: 0.20 
     ci_cons_bounds_right: 0.21 
                  p_joint: 0.34 
     ci_joint_bounds_left: 0.33 
    ci_joint_bounds_right: 0.35 

Current progress: 28 percent done.
ZSCAN20
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.358711e-02	ci left: 5.668447e-01	ci right 5.863106e-01	k: 5766	n:10000
Cons ci ratio: 8.682941e-02	ci left: 1.618987e-01	ci right 1.766945e-01	k: 1692	n:10000
KS ci ratio: 1.717997e-02	ci left: 8.315462e-01	ci right 8.460558e-01	k: 8389	n:10000
ZSCAN20   10000 perm   2 sec   (5048 perm/sec)   p_kst 8.389000e-01   p_cons 1.692000e-01   p_joint 5.766000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN20.7_3160_10000_0.8389_0.1692_0.5766.png
                gene_name: ZSCAN20
               theta_stop: 0.087 
                    nperm: 10000 
                     p_ks: 0.84 
        ci_ks_bounds_left: 0.83 
       ci_ks_bounds_right: 0.85 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.16 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.58 
     ci_joint_bounds_left: 0.57 
    ci_joint_bounds_right: 0.59 

Current progress: 29 percent done.
ZSWIM3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.618587e-01	ci left: 5.090025e-02	ci right 5.996092e-02	k: 553	n:10000
Cons ci ratio: 1.136577e-01	ci left: 1.002268e-01	ci right 1.124036e-01	k: 1062	n:10000
KS ci ratio: 1.356182e-01	ci left: 7.184865e-02	ci right 8.239926e-02	k: 770	n:10000
ZSWIM3   10000 perm   2 sec   (5605 perm/sec)   p_kst 7.700000e-02   p_cons 1.062000e-01   p_joint 5.530000e-02

Joint ci ratio: 8.476450e-02	ci left: 9.249067e-02	ci right 1.007270e-01	k: 1931	n:20000
Cons ci ratio: 7.992864e-02	ci left: 1.030430e-01	ci right 1.116715e-01	k: 2146	n:20000
KS ci ratio: 9.647600e-02	ci left: 7.255975e-02	ci right 7.996401e-02	k: 1524	n:20000
ZSWIM3   20000 perm   4 sec   (5039 perm/sec)   p_kst 7.620000e-02   p_cons 1.073000e-01   p_joint 9.655000e-02

Outputting figure to mutsig2_images.part000000000200/ZSWIM3.7_2099_20000_0.0762_0.1073_0.09655.png
                gene_name: ZSWIM3
               theta_stop: 0.096 
                    nperm: 20000 
                     p_ks: 0.076 
        ci_ks_bounds_left: 0.073 
       ci_ks_bounds_right: 0.080 
                   p_cons: 0.11 
      ci_cons_bounds_left: 0.10 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.097 
     ci_joint_bounds_left: 0.092 
    ci_joint_bounds_right: 0.10 

Current progress: 30 percent done.
ZNF800
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.017928e-02	ci left: 2.888472e-01	ci right 3.068707e-01	k: 2978	n:10000
Cons ci ratio: 1.374621e-01	ci left: 7.000876e-02	ci right 8.044030e-02	k: 751	n:10000
KS ci ratio: 1.034997e-02	ci left: 9.298868e-01	ci right 9.396581e-01	k: 9349	n:10000
ZNF800   10000 perm   2 sec   (5423 perm/sec)   p_kst 9.349000e-01   p_cons 7.510000e-02   p_joint 2.978000e-01

Joint ci ratio: 5.195722e-02	ci left: 2.157607e-01	ci right 2.273203e-01	k: 4430	n:20000
Cons ci ratio: 9.925096e-02	ci left: 6.874809e-02	ci right 7.597683e-02	k: 1446	n:20000
KS ci ratio: 6.686225e-03	ci left: 9.418015e-01	ci right 9.481684e-01	k: 18901	n:20000
ZNF800   20000 perm   4 sec   (4884 perm/sec)   p_kst 9.450500e-01   p_cons 7.230000e-02   p_joint 2.215000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF800.6_2015_20000_0.94505_0.0723_0.2215.png
                gene_name: ZNF800
               theta_stop: 0.099 
                    nperm: 20000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.072 
      ci_cons_bounds_left: 0.069 
     ci_cons_bounds_right: 0.076 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 32 percent done.
ZNF84
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.177918e-01	ci left: 9.379779e-02	ci right 1.056366e-01	k: 996	n:10000
Cons ci ratio: 1.045236e-01	ci left: 1.168187e-01	ci right 1.298017e-01	k: 1232	n:10000
KS ci ratio: 2.549086e-01	ci left: 2.015152e-02	ci right 2.613074e-02	k: 230	n:10000
ZNF84   10000 perm   2 sec   (5365 perm/sec)   p_kst 2.300000e-02   p_cons 1.232000e-01   p_joint 9.960000e-02

Joint ci ratio: 1.397493e-01	ci left: 3.519929e-02	ci right 4.053615e-02	k: 756	n:20000
Cons ci ratio: 7.382534e-02	ci left: 1.189702e-01	ci right 1.281396e-01	k: 2470	n:20000
KS ci ratio: 1.920746e-01	ci left: 1.843815e-02	ci right 2.240301e-02	k: 407	n:20000
ZNF84   20000 perm   4 sec   (4859 perm/sec)   p_kst 2.035000e-02   p_cons 1.235000e-01   p_joint 3.780000e-02

Joint ci ratio: 1.306482e-01	ci left: 2.722700e-02	ci right 3.106491e-02	k: 873	n:30000
Cons ci ratio: 6.019977e-02	ci left: 1.200930e-01	ci right 1.275800e-01	k: 3714	n:30000
KS ci ratio: 1.541510e-01	ci left: 1.947147e-02	ci right 2.275552e-02	k: 632	n:30000
ZNF84   30000 perm   6 sec   (4654 perm/sec)   p_kst 2.106667e-02   p_cons 1.238000e-01   p_joint 2.910000e-02

Joint ci ratio: 1.110679e-01	ci left: 2.852023e-02	ci right 3.189842e-02	k: 1207	n:40000
Cons ci ratio: 5.230556e-02	ci left: 1.198952e-01	ci right 1.263596e-01	k: 4924	n:40000
KS ci ratio: 1.347274e-01	ci left: 1.932710e-02	ci right 2.214308e-02	k: 828	n:40000
ZNF84   40000 perm   9 sec   (4520 perm/sec)   p_kst 2.070000e-02   p_cons 1.231000e-01   p_joint 3.017500e-02

Joint ci ratio: 9.543683e-02	ci left: 3.108013e-02	ci right 3.421444e-02	k: 1631	n:50000
Cons ci ratio: 4.701140e-02	ci left: 1.192027e-01	ci right 1.249613e-01	k: 6103	n:50000
KS ci ratio: 1.205784e-01	ci left: 1.945050e-02	ci right 2.196558e-02	k: 1034	n:50000
ZNF84   50000 perm   11 sec   (4408 perm/sec)   p_kst 2.068000e-02   p_cons 1.220600e-01   p_joint 3.262000e-02

Joint ci ratio: 9.388732e-02	ci left: 2.690621e-02	ci right 2.957302e-02	k: 1693	n:60000
Cons ci ratio: 4.277515e-02	ci left: 1.201508e-01	ci right 1.254191e-01	k: 7366	n:60000
KS ci ratio: 1.104822e-01	ci left: 1.941349e-02	ci right 2.169988e-02	k: 1232	n:60000
ZNF84   60000 perm   14 sec   (4312 perm/sec)   p_kst 2.053333e-02   p_cons 1.227667e-01   p_joint 2.821667e-02

Joint ci ratio: 8.745557e-02	ci left: 2.667848e-02	ci right 2.913229e-02	k: 1952	n:70000
Cons ci ratio: 3.963324e-02	ci left: 1.201789e-01	ci right 1.250524e-01	k: 8582	n:70000
KS ci ratio: 1.032248e-01	ci left: 1.914275e-02	ci right 2.124014e-02	k: 1412	n:70000
ZNF84   70000 perm   17 sec   (4227 perm/sec)   p_kst 2.017143e-02   p_cons 1.226000e-01   p_joint 2.788571e-02

Joint ci ratio: 7.188608e-02	ci left: 3.454773e-02	ci right 3.713607e-02	k: 2866	n:80000
Cons ci ratio: 3.618784e-02	ci left: 1.255930e-01	ci right 1.302341e-01	k: 10232	n:80000
KS ci ratio: 9.655365e-02	ci left: 1.921190e-02	ci right 2.117311e-02	k: 1614	n:80000
ZNF84   80000 perm   19 sec   (4139 perm/sec)   p_kst 2.017500e-02   p_cons 1.279000e-01   p_joint 3.582500e-02

Outputting figure to mutsig2_images.part000000000200/ZNF84.6_2233_80000_0.020175_0.1279_0.035825.png
                gene_name: ZNF84
               theta_stop: 0.097 
                    nperm: 80000 
                     p_ks: 0.020 
        ci_ks_bounds_left: 0.019 
       ci_ks_bounds_right: 0.021 
                   p_cons: 0.13 
      ci_cons_bounds_left: 0.13 
     ci_cons_bounds_right: 0.13 
                  p_joint: 0.036 
     ci_joint_bounds_left: 0.035 
    ci_joint_bounds_right: 0.037 

Current progress: 33 percent done.
ZNF846
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.178575e-01	ci left: 9.370045e-02	ci right 1.055340e-01	k: 995	n:10000
Cons ci ratio: 1.389664e-01	ci left: 6.855690e-02	ci right 7.889307e-02	k: 736	n:10000
KS ci ratio: 8.282464e-02	ci left: 1.753662e-01	ci right 1.906189e-01	k: 1829	n:10000
ZNF846   10000 perm   2 sec   (5794 perm/sec)   p_kst 1.829000e-01   p_cons 7.360000e-02   p_joint 9.950000e-02

Joint ci ratio: 7.698740e-02	ci left: 1.103149e-01	ci right 1.191974e-01	k: 2294	n:20000
Cons ci ratio: 9.355220e-02	ci left: 7.691238e-02	ci right 8.451004e-02	k: 1613	n:20000
KS ci ratio: 5.792832e-02	ci left: 1.808755e-01	ci right 1.917159e-01	k: 3725	n:20000
ZNF846   20000 perm   4 sec   (5204 perm/sec)   p_kst 1.862500e-01   p_cons 8.065000e-02   p_joint 1.147000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF846.6_1622_20000_0.18625_0.08065_0.1147.png
                gene_name: ZNF846
               theta_stop: 0.094 
                    nperm: 20000 
                     p_ks: 0.19 
        ci_ks_bounds_left: 0.18 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.081 
      ci_cons_bounds_left: 0.077 
     ci_cons_bounds_right: 0.085 
                  p_joint: 0.11 
     ci_joint_bounds_left: 0.11 
    ci_joint_bounds_right: 0.12 

Current progress: 35 percent done.
ZP1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.096428e-02	ci left: 7.693191e-01	ci right 7.857189e-01	k: 7776	n:10000
Cons ci ratio: 3.960380e-02	ci left: 4.849534e-01	ci right 5.046496e-01	k: 4948	n:10000
KS ci ratio: 2.069749e-02	ci left: 7.737760e-01	ci right 7.900594e-01	k: 7820	n:10000
ZP1   10000 perm   2 sec   (5714 perm/sec)   p_kst 7.820000e-01   p_cons 4.948000e-01   p_joint 7.776000e-01

Outputting figure to mutsig2_images.part000000000200/ZP1.6_1965_10000_0.782_0.4948_0.7776.png
                gene_name: ZP1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.77 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.78 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.79 

Current progress: 36 percent done.
ZPLD1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.155899e-01	ci left: 2.854258e-02	ci right 3.553353e-02	k: 319	n:10000
Cons ci ratio: 2.268173e-01	ci left: 2.570435e-02	ci right 3.237377e-02	k: 289	n:10000
KS ci ratio: 6.567074e-02	ci left: 2.539954e-01	ci right 2.713431e-01	k: 2626	n:10000
ZPLD1   10000 perm   2 sec   (5947 perm/sec)   p_kst 2.626000e-01   p_cons 2.890000e-02   p_joint 3.190000e-02

Joint ci ratio: 1.175757e-01	ci left: 4.954642e-02	ci right 5.578445e-02	k: 1052	n:20000
Cons ci ratio: 1.556167e-01	ci left: 2.835269e-02	ci right 3.318501e-02	k: 614	n:20000
KS ci ratio: 4.609145e-02	ci left: 2.594389e-01	ci right 2.717293e-01	k: 5311	n:20000
ZPLD1   20000 perm   4 sec   (5341 perm/sec)   p_kst 2.655500e-01   p_cons 3.070000e-02   p_joint 5.260000e-02

Joint ci ratio: 8.257658e-02	ci left: 6.697440e-02	ci right 7.277590e-02	k: 2095	n:30000
Cons ci ratio: 1.285426e-01	ci left: 2.813091e-02	ci right 3.202747e-02	k: 901	n:30000
KS ci ratio: 3.778532e-02	ci left: 2.590184e-01	ci right 2.690274e-01	k: 7920	n:30000
ZPLD1   30000 perm   6 sec   (5101 perm/sec)   p_kst 2.640000e-01   p_cons 3.003333e-02   p_joint 6.983333e-02

Joint ci ratio: 8.130165e-02	ci left: 5.268762e-02	ci right 5.717727e-02	k: 2196	n:40000
Cons ci ratio: 1.114969e-01	ci left: 2.830132e-02	ci right 3.166737e-02	k: 1198	n:40000
KS ci ratio: 3.278917e-02	ci left: 2.589141e-01	ci right 2.675703e-01	k: 10529	n:40000
ZPLD1   40000 perm   8 sec   (4934 perm/sec)   p_kst 2.632250e-01   p_cons 2.995000e-02   p_joint 5.490000e-02

Joint ci ratio: 6.984756e-02	ci left: 5.718640e-02	ci right 6.134496e-02	k: 2962	n:50000
Cons ci ratio: 1.011883e-01	ci left: 2.766358e-02	ci right 3.063143e-02	k: 1456	n:50000
KS ci ratio: 2.934949e-02	ci left: 2.590851e-01	ci right 2.668224e-01	k: 13147	n:50000
ZPLD1   50000 perm   10 sec   (4802 perm/sec)   p_kst 2.629400e-01   p_cons 2.912000e-02   p_joint 5.924000e-02

Joint ci ratio: 6.024244e-02	ci left: 6.392746e-02	ci right 6.791465e-02	k: 3954	n:60000
Cons ci ratio: 9.200413e-02	ci left: 2.801393e-02	ci right 3.073185e-02	k: 1761	n:60000
KS ci ratio: 2.670801e-02	ci left: 2.606420e-01	ci right 2.677141e-01	k: 15850	n:60000
ZPLD1   60000 perm   13 sec   (4686 perm/sec)   p_kst 2.641667e-01   p_cons 2.935000e-02   p_joint 6.590000e-02

Outputting figure to mutsig2_images.part000000000200/ZPLD1.6_1340_60000_0.26417_0.02935_0.0659.png
                gene_name: ZPLD1
               theta_stop: 0.092 
                    nperm: 60000 
                     p_ks: 0.26 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.27 
                   p_cons: 0.029 
      ci_cons_bounds_left: 0.028 
     ci_cons_bounds_right: 0.031 
                  p_joint: 0.066 
     ci_joint_bounds_left: 0.064 
    ci_joint_bounds_right: 0.068 

Current progress: 38 percent done.
ZNF791
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 8.377868e-02	ci left: 1.720224e-01	ci right 1.871647e-01	k: 1795	n:10000
Cons ci ratio: 5.010390e-02	ci left: 3.700748e-01	ci right 3.891954e-01	k: 3796	n:10000
KS ci ratio: 1.043788e-01	ci left: 1.171118e-01	ci right 1.301083e-01	k: 1235	n:10000
ZNF791   10000 perm   2 sec   (5782 perm/sec)   p_kst 1.235000e-01   p_cons 3.796000e-01   p_joint 1.795000e-01

Joint ci ratio: 5.334358e-02	ci left: 2.068972e-01	ci right 2.182865e-01	k: 4251	n:20000
Cons ci ratio: 3.505180e-02	ci left: 3.779494e-01	ci right 3.914841e-01	k: 7694	n:20000
KS ci ratio: 7.272146e-02	ci left: 1.222179e-01	ci right 1.314909e-01	k: 2536	n:20000
ZNF791   20000 perm   4 sec   (5232 perm/sec)   p_kst 1.268000e-01   p_cons 3.847000e-01   p_joint 2.125500e-01

Outputting figure to mutsig2_images.part000000000200/ZNF791.5_1747_20000_0.1268_0.3847_0.21255.png
                gene_name: ZNF791
               theta_stop: 0.073 
                    nperm: 20000 
                     p_ks: 0.13 
        ci_ks_bounds_left: 0.12 
       ci_ks_bounds_right: 0.13 
                   p_cons: 0.38 
      ci_cons_bounds_left: 0.38 
     ci_cons_bounds_right: 0.39 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 39 percent done.
ZNF793
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.375935e-02	ci left: 5.643380e-01	ci right 5.838188e-01	k: 5741	n:10000
Cons ci ratio: 3.914713e-02	ci left: 4.907512e-01	ci right 5.104484e-01	k: 5006	n:10000
KS ci ratio: 5.314023e-02	ci left: 3.429316e-01	ci right 3.617544e-01	k: 3523	n:10000
ZNF793   10000 perm   2 sec   (5712 perm/sec)   p_kst 3.523000e-01   p_cons 5.006000e-01   p_joint 5.741000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF793.5_1237_10000_0.3523_0.5006_0.5741.png
                gene_name: ZNF793
               theta_stop: 0.053 
                    nperm: 10000 
                     p_ks: 0.35 
        ci_ks_bounds_left: 0.34 
       ci_ks_bounds_right: 0.36 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 0.57 
     ci_joint_bounds_left: 0.56 
    ci_joint_bounds_right: 0.58 

Current progress: 41 percent done.
ZSCAN2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.277544e-02	ci left: 5.787803e-01	ci right 5.981681e-01	k: 5885	n:10000
Cons ci ratio: 6.003574e-02	ci left: 2.898383e-01	ci right 3.078790e-01	k: 2988	n:10000
KS ci ratio: 2.131539e-02	ci left: 7.634461e-01	ci right 7.799953e-01	k: 7718	n:10000
ZSCAN2   10000 perm   2 sec   (5714 perm/sec)   p_kst 7.718000e-01   p_cons 2.988000e-01   p_joint 5.885000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN2.5_1943_10000_0.7718_0.2988_0.5885.png
                gene_name: ZSCAN2
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.77 
        ci_ks_bounds_left: 0.76 
       ci_ks_bounds_right: 0.78 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 42 percent done.
ZXDA
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.856686e-02	ci left: 6.436774e-01	ci right 6.624334e-01	k: 6531	n:10000
KS ci ratio: 3.942206e-02	ci left: 4.872524e-01	ci right 5.069493e-01	k: 4971	n:10000
ZXDA   10000 perm   2 sec   (5604 perm/sec)   p_kst 4.971000e-01   p_cons 6.531000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZXDA.5_2404_10000_0.4971_0.6531_1.png
                gene_name: ZXDA
               theta_stop: 0.039 
                    nperm: 10000 
                     p_ks: 0.50 
        ci_ks_bounds_left: 0.49 
       ci_ks_bounds_right: 0.51 
                   p_cons: 0.65 
      ci_cons_bounds_left: 0.64 
     ci_cons_bounds_right: 0.66 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 43 percent done.
ZZZ3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 4.401905e-02	ci left: 4.324339e-01	ci right 4.519998e-01	k: 4422	n:10000
KS ci ratio: 2.049711e-02	ci left: 7.771196e-01	ci right 7.933139e-01	k: 7853	n:10000
ZZZ3   10000 perm   2 sec   (4889 perm/sec)   p_kst 7.853000e-01   p_cons 4.422000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZZZ3.5_2756_10000_0.7853_0.4422_1.png
                gene_name: ZZZ3
               theta_stop: 0.044 
                    nperm: 10000 
                     p_ks: 0.79 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.44 
      ci_cons_bounds_left: 0.43 
     ci_cons_bounds_right: 0.45 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 45 percent done.
ZNF789
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.116412e-02	ci left: 7.659773e-01	ci right 7.824627e-01	k: 7743	n:10000
Cons ci ratio: 5.070478e-02	ci left: 3.645043e-01	ci right 3.835691e-01	k: 3740	n:10000
KS ci ratio: 4.183805e-02	ci left: 4.575817e-01	ci right 4.772373e-01	k: 4674	n:10000
ZNF789   10000 perm   2 sec   (6011 perm/sec)   p_kst 4.674000e-01   p_cons 3.740000e-01   p_joint 7.743000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF789.4_1336_10000_0.4674_0.374_0.7743.png
                gene_name: ZNF789
               theta_stop: 0.051 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.37 
      ci_cons_bounds_left: 0.36 
     ci_cons_bounds_right: 0.38 
                  p_joint: 0.77 
     ci_joint_bounds_left: 0.77 
    ci_joint_bounds_right: 0.78 

Current progress: 46 percent done.
ZNF792
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.362165e-02	ci left: 7.248183e-01	ci right 7.422455e-01	k: 7336	n:10000
KS ci ratio: 9.103802e-03	ci left: 9.444016e-01	ci right 9.531346e-01	k: 9489	n:10000
ZNF792   10000 perm   2 sec   (6060 perm/sec)   p_kst 9.489000e-01   p_cons 7.336000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZNF792.4_1915_10000_0.9489_0.7336_1.png
                gene_name: ZNF792
               theta_stop: 0.024 
                    nperm: 10000 
                     p_ks: 0.95 
        ci_ks_bounds_left: 0.94 
       ci_ks_bounds_right: 0.95 
                   p_cons: 0.73 
      ci_cons_bounds_left: 0.72 
     ci_cons_bounds_right: 0.74 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 48 percent done.
ZNF81
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.080975e-02	ci left: 6.084942e-01	ci right 6.276370e-01	k: 6181	n:10000
Cons ci ratio: 5.610910e-02	ci left: 3.187002e-01	ci right 3.372001e-01	k: 3279	n:10000
KS ci ratio: 4.147853e-02	ci left: 4.618753e-01	ci right 4.815412e-01	k: 4717	n:10000
ZNF81   10000 perm   2 sec   (6009 perm/sec)   p_kst 4.717000e-01   p_cons 3.279000e-01   p_joint 6.181000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF81.4_2002_10000_0.4717_0.3279_0.6181.png
                gene_name: ZNF81
               theta_stop: 0.056 
                    nperm: 10000 
                     p_ks: 0.47 
        ci_ks_bounds_left: 0.46 
       ci_ks_bounds_right: 0.48 
                   p_cons: 0.33 
      ci_cons_bounds_left: 0.32 
     ci_cons_bounds_right: 0.34 
                  p_joint: 0.62 
     ci_joint_bounds_left: 0.61 
    ci_joint_bounds_right: 0.63 

Current progress: 49 percent done.
ZNF813
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.687406e-02	ci left: 8.364327e-01	ci right 8.507666e-01	k: 8437	n:10000
KS ci ratio: 5.999634e-03	ci left: 9.740817e-01	ci right 9.800359e-01	k: 9772	n:10000
ZNF813   10000 perm   2 sec   (6051 perm/sec)   p_kst 9.772000e-01   p_cons 8.437000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZNF813.4_1866_10000_0.9772_0.8437_1.png
                gene_name: ZNF813
               theta_stop: 0.017 
                    nperm: 10000 
                     p_ks: 0.98 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.98 
                   p_cons: 0.84 
      ci_cons_bounds_left: 0.84 
     ci_cons_bounds_right: 0.85 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 51 percent done.
ZNF821
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.078901e-02	ci left: 2.846853e-01	ci right 3.026351e-01	k: 2936	n:10000
Cons ci ratio: 2.217319e-02	ci left: 7.490766e-01	ci right 7.659732e-01	k: 7576	n:10000
KS ci ratio: 9.875836e-02	ci left: 1.293382e-01	ci right 1.428746e-01	k: 1360	n:10000
ZNF821   10000 perm   2 sec   (6565 perm/sec)   p_kst 1.360000e-01   p_cons 7.576000e-01   p_joint 2.936000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF821.4_1133_10000_0.136_0.7576_0.2936.png
                gene_name: ZNF821
               theta_stop: 0.099 
                    nperm: 10000 
                     p_ks: 0.14 
        ci_ks_bounds_left: 0.13 
       ci_ks_bounds_right: 0.14 
                   p_cons: 0.76 
      ci_cons_bounds_left: 0.75 
     ci_cons_bounds_right: 0.77 
                  p_joint: 0.29 
     ci_joint_bounds_left: 0.28 
    ci_joint_bounds_right: 0.30 

Current progress: 52 percent done.
ZNF823
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.882575e-02	ci left: 6.395531e-01	ci right 6.583601e-01	k: 6490	n:10000
Cons ci ratio: 3.239796e-02	ci left: 5.843990e-01	ci right 6.037461e-01	k: 5941	n:10000
KS ci ratio: 4.280852e-02	ci left: 4.462022e-01	ci right 4.658234e-01	k: 4560	n:10000
ZNF823   10000 perm   2 sec   (5909 perm/sec)   p_kst 4.560000e-01   p_cons 5.941000e-01   p_joint 6.490000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF823.4_1849_10000_0.456_0.5941_0.649.png
                gene_name: ZNF823
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.59 
      ci_cons_bounds_left: 0.58 
     ci_cons_bounds_right: 0.60 
                  p_joint: 0.65 
     ci_joint_bounds_left: 0.64 
    ci_joint_bounds_right: 0.66 

Current progress: 54 percent done.
ZNF85
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.321963e-02	ci left: 2.688388e-01	ci right 2.864909e-01	k: 2776	n:10000
Cons ci ratio: 7.426411e-02	ci left: 2.097433e-01	ci right 2.260214e-01	k: 2178	n:10000
KS ci ratio: 5.617279e-02	ci left: 3.182039e-01	ci right 3.366967e-01	k: 3274	n:10000
ZNF85   10000 perm   2 sec   (6012 perm/sec)   p_kst 3.274000e-01   p_cons 2.178000e-01   p_joint 2.776000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF85.4_1804_10000_0.3274_0.2178_0.2776.png
                gene_name: ZNF85
               theta_stop: 0.074 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.32 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.22 
      ci_cons_bounds_left: 0.21 
     ci_cons_bounds_right: 0.23 
                  p_joint: 0.28 
     ci_joint_bounds_left: 0.27 
    ci_joint_bounds_right: 0.29 

Current progress: 55 percent done.
ZRANB2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.640872e-02	ci left: 5.269672e-01	ci right 5.466113e-01	k: 5368	n:10000
Cons ci ratio: 1.023915e-02	ci left: 9.312316e-01	ci right 9.409125e-01	k: 9362	n:10000
KS ci ratio: 5.527957e-02	ci left: 3.252519e-01	ci right 3.438446e-01	k: 3345	n:10000
ZRANB2   10000 perm   2 sec   (6565 perm/sec)   p_kst 3.345000e-01   p_cons 9.362000e-01   p_joint 5.368000e-01

Outputting figure to mutsig2_images.part000000000200/ZRANB2.4_1071_10000_0.3345_0.9362_0.5368.png
                gene_name: ZRANB2
               theta_stop: 0.055 
                    nperm: 10000 
                     p_ks: 0.33 
        ci_ks_bounds_left: 0.33 
       ci_ks_bounds_right: 0.34 
                   p_cons: 0.94 
      ci_cons_bounds_left: 0.93 
     ci_cons_bounds_right: 0.94 
                  p_joint: 0.54 
     ci_joint_bounds_left: 0.53 
    ci_joint_bounds_right: 0.55 

Current progress: 57 percent done.
ZRANB3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.258607e-02	ci left: 3.477017e-01	ci right 3.665816e-01	k: 3571	n:10000
Cons ci ratio: 1.183862e-01	ci left: 9.292171e-02	ci right 1.047132e-01	k: 987	n:10000
KS ci ratio: 1.373534e-02	ci left: 8.844205e-01	ci right 8.967510e-01	k: 8907	n:10000
ZRANB3   10000 perm   2 sec   (5565 perm/sec)   p_kst 8.907000e-01   p_cons 9.870000e-02   p_joint 3.571000e-01

Joint ci ratio: 3.742802e-02	ci left: 3.475184e-01	ci right 3.608240e-01	k: 7083	n:20000
Cons ci ratio: 8.253650e-02	ci left: 9.715154e-02	ci right 1.055648e-01	k: 2026	n:20000
KS ci ratio: 9.593572e-03	ci left: 8.886846e-01	ci right 8.973008e-01	k: 17861	n:20000
ZRANB3   20000 perm   4 sec   (5049 perm/sec)   p_kst 8.930500e-01   p_cons 1.013000e-01   p_joint 3.541500e-01

Outputting figure to mutsig2_images.part000000000200/ZRANB3.4_3320_20000_0.89305_0.1013_0.35415.png
                gene_name: ZRANB3
               theta_stop: 0.083 
                    nperm: 20000 
                     p_ks: 0.89 
        ci_ks_bounds_left: 0.89 
       ci_ks_bounds_right: 0.90 
                   p_cons: 0.10 
      ci_cons_bounds_left: 0.097 
     ci_cons_bounds_right: 0.11 
                  p_joint: 0.35 
     ci_joint_bounds_left: 0.35 
    ci_joint_bounds_right: 0.36 

Current progress: 58 percent done.
ZSCAN1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.409025e-02	ci left: 2.105324e-01	ci right 2.268318e-01	k: 2186	n:10000
Cons ci ratio: 1.542238e-02	ci left: 8.591667e-01	ci right 8.726194e-01	k: 8660	n:10000
KS ci ratio: 1.126523e-01	ci left: 1.018840e-01	ci right 1.141454e-01	k: 1079	n:10000
ZSCAN1   10000 perm   2 sec   (6469 perm/sec)   p_kst 1.079000e-01   p_cons 8.660000e-01   p_joint 2.186000e-01

Joint ci ratio: 5.342337e-02	ci left: 2.064021e-01	ci right 2.177817e-01	k: 4241	n:20000
Cons ci ratio: 1.094660e-02	ci left: 8.602874e-01	ci right 8.698062e-01	k: 17302	n:20000
KS ci ratio: 8.047557e-02	ci left: 1.017662e-01	ci right 1.103488e-01	k: 2120	n:20000
ZSCAN1   20000 perm   3 sec   (5765 perm/sec)   p_kst 1.060000e-01   p_cons 8.651000e-01   p_joint 2.120500e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN1.4_1243_20000_0.106_0.8651_0.21205.png
                gene_name: ZSCAN1
               theta_stop: 0.080 
                    nperm: 20000 
                     p_ks: 0.11 
        ci_ks_bounds_left: 0.10 
       ci_ks_bounds_right: 0.11 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.21 
     ci_joint_bounds_left: 0.21 
    ci_joint_bounds_right: 0.22 

Current progress: 59 percent done.
ZSCAN4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.516762e-02	ci left: 5.441930e-01	ci right 5.637756e-01	k: 5540	n:10000
Cons ci ratio: 6.390416e-02	ci left: 2.645824e-01	ci right 2.821498e-01	k: 2733	n:10000
KS ci ratio: 2.055786e-02	ci left: 7.761063e-01	ci right 7.923278e-01	k: 7843	n:10000
ZSCAN4   10000 perm   2 sec   (6321 perm/sec)   p_kst 7.843000e-01   p_cons 2.733000e-01   p_joint 5.540000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN4.4_1314_10000_0.7843_0.2733_0.554.png
                gene_name: ZSCAN4
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.78 
        ci_ks_bounds_left: 0.78 
       ci_ks_bounds_right: 0.79 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.26 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.55 
     ci_joint_bounds_left: 0.54 
    ci_joint_bounds_right: 0.56 

Current progress: 61 percent done.
ZWILCH
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 9.503224e-02	ci left: 1.384471e-01	ci right 1.523602e-01	k: 1453	n:10000
Cons ci ratio: 2.617518e-02	ci left: 6.824434e-01	ci right 7.006449e-01	k: 6916	n:10000
KS ci ratio: 2.046152e-01	ci left: 3.176903e-02	ci right 3.910482e-02	k: 353	n:10000
ZWILCH   10000 perm   2 sec   (6124 perm/sec)   p_kst 3.530000e-02   p_cons 6.916000e-01   p_joint 1.453000e-01

Joint ci ratio: 9.467332e-02	ci left: 7.520025e-02	ci right 8.272270e-02	k: 1578	n:20000
Cons ci ratio: 1.859385e-02	ci left: 6.831861e-01	ci right 6.960588e-01	k: 13793	n:20000
KS ci ratio: 1.478567e-01	ci left: 3.143485e-02	ci right 3.650181e-02	k: 678	n:20000
ZWILCH   20000 perm   4 sec   (5444 perm/sec)   p_kst 3.390000e-02   p_cons 6.896500e-01   p_joint 7.890000e-02

Joint ci ratio: 8.013678e-02	ci left: 7.089895e-02	ci right 7.685056e-02	k: 2215	n:30000
Cons ci ratio: 1.515183e-02	ci left: 6.852339e-01	ci right 6.957292e-01	k: 20715	n:30000
KS ci ratio: 1.200257e-01	ci left: 3.226906e-02	ci right 3.642175e-02	k: 1029	n:30000
ZWILCH   30000 perm   6 sec   (5167 perm/sec)   p_kst 3.430000e-02   p_cons 6.905000e-01   p_joint 7.383333e-02

Joint ci ratio: 7.244703e-02	ci left: 6.572391e-02	ci right 7.068900e-02	k: 2727	n:40000
Cons ci ratio: 1.315034e-02	ci left: 6.850148e-01	ci right 6.941077e-01	k: 27583	n:40000
KS ci ratio: 1.038414e-01	ci left: 3.261093e-02	ci right 3.620707e-02	k: 1375	n:40000
ZWILCH   40000 perm   8 sec   (4994 perm/sec)   p_kst 3.437500e-02   p_cons 6.895750e-01   p_joint 6.817500e-02

Joint ci ratio: 5.579156e-02	ci left: 8.734742e-02	ci right 9.238031e-02	k: 4492	n:50000
Cons ci ratio: 1.175423e-02	ci left: 6.857847e-01	ci right 6.939132e-01	k: 34493	n:50000
KS ci ratio: 9.330092e-02	ci left: 3.250678e-02	ci right 3.570761e-02	k: 1704	n:50000
ZWILCH   50000 perm   10 sec   (4857 perm/sec)   p_kst 3.408000e-02   p_cons 6.898600e-01   p_joint 8.984000e-02

Outputting figure to mutsig2_images.part000000000200/ZWILCH.4_1848_50000_0.03408_0.68986_0.08984.png
                gene_name: ZWILCH
               theta_stop: 0.093 
                    nperm: 50000 
                     p_ks: 0.034 
        ci_ks_bounds_left: 0.033 
       ci_ks_bounds_right: 0.036 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.69 
     ci_cons_bounds_right: 0.69 
                  p_joint: 0.090 
     ci_joint_bounds_left: 0.087 
    ci_joint_bounds_right: 0.092 

Current progress: 62 percent done.
ZYG11B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.309032e-02	ci left: 7.337090e-01	ci right 7.509496e-01	k: 7424	n:10000
Cons ci ratio: 4.293816e-02	ci left: 4.447053e-01	ci right 4.643212e-01	k: 4545	n:10000
KS ci ratio: 3.673202e-02	ci left: 5.225625e-01	ci right 5.422186e-01	k: 5324	n:10000
ZYG11B   10000 perm   2 sec   (5675 perm/sec)   p_kst 5.324000e-01   p_cons 4.545000e-01   p_joint 7.424000e-01

Outputting figure to mutsig2_images.part000000000200/ZYG11B.4_2291_10000_0.5324_0.4545_0.7424.png
                gene_name: ZYG11B
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.45 
      ci_cons_bounds_left: 0.44 
     ci_cons_bounds_right: 0.46 
                  p_joint: 0.74 
     ci_joint_bounds_left: 0.73 
    ci_joint_bounds_right: 0.75 

Current progress: 64 percent done.
ZNF799
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.613146e-02	ci left: 5.307719e-01	ci right 5.504044e-01	k: 5406	n:10000
KS ci ratio: 4.348773e-02	ci left: 4.384192e-01	ci right 4.580110e-01	k: 4482	n:10000
ZNF799   10000 perm   2 sec   (6201 perm/sec)   p_kst 4.482000e-01   p_cons 5.406000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZNF799.3_1948_10000_0.4482_0.5406_1.png
                gene_name: ZNF799
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.45 
        ci_ks_bounds_left: 0.44 
       ci_ks_bounds_right: 0.46 
                   p_cons: 0.54 
      ci_cons_bounds_left: 0.53 
     ci_cons_bounds_right: 0.55 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 65 percent done.
ZNF80
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.801804e-02	ci left: 8.180184e-01	ci right 8.329915e-01	k: 8256	n:10000
KS ci ratio: 6.772759e-03	ci left: 9.676262e-01	ci right 9.742956e-01	k: 9711	n:10000
ZNF80   10000 perm   1 sec   (6687 perm/sec)   p_kst 9.711000e-01   p_cons 8.256000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZNF80.3_826_10000_0.9711_0.8256_1.png
                gene_name: ZNF80
               theta_stop: 0.018 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.83 
      ci_cons_bounds_left: 0.82 
     ci_cons_bounds_right: 0.83 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 67 percent done.
ZNF828
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.176015e-02	ci left: 1.792031e-01	ci right 1.945798e-01	k: 1868	n:10000
KS ci ratio: 2.611385e-02	ci left: 6.834513e-01	ci right 7.016364e-01	k: 6926	n:10000
ZNF828   10000 perm   2 sec   (5253 perm/sec)   p_kst 6.926000e-01   p_cons 1.868000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZNF828.3_2443_10000_0.6926_0.1868_1.png
                gene_name: ZNF828
               theta_stop: 0.082 
                    nperm: 10000 
                     p_ks: 0.69 
        ci_ks_bounds_left: 0.68 
       ci_ks_bounds_right: 0.70 
                   p_cons: 0.19 
      ci_cons_bounds_left: 0.18 
     ci_cons_bounds_right: 0.19 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 68 percent done.
ZNF862
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.845539e-02	ci left: 3.010409e-01	ci right 3.192698e-01	k: 3101	n:10000
Cons ci ratio: 5.499528e-02	ci left: 3.275355e-01	ci right 3.461596e-01	k: 3368	n:10000
KS ci ratio: 8.472899e-02	ci left: 1.687778e-01	ci right 1.838112e-01	k: 1762	n:10000
ZNF862   10000 perm   2 sec   (5275 perm/sec)   p_kst 1.762000e-01   p_cons 3.368000e-01   p_joint 3.101000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF862.3_3542_10000_0.1762_0.3368_0.3101.png
                gene_name: ZNF862
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.34 
      ci_cons_bounds_left: 0.33 
     ci_cons_bounds_right: 0.35 
                  p_joint: 0.31 
     ci_joint_bounds_left: 0.30 
    ci_joint_bounds_right: 0.32 

Current progress: 70 percent done.
ZNF878
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.842084e-03	ci left: 9.576469e-01	ci right 9.652813e-01	k: 9616	n:10000
Cons ci ratio: 3.165106e-02	ci left: 5.956404e-01	ci right 6.148982e-01	k: 6053	n:10000
KS ci ratio: 2.739085e-02	ci left: 6.625985e-01	ci right 6.811013e-01	k: 6719	n:10000
ZNF878   10000 perm   2 sec   (6056 perm/sec)   p_kst 6.719000e-01   p_cons 6.053000e-01   p_joint 9.616000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF878.3_1757_10000_0.6719_0.6053_0.9616.png
                gene_name: ZNF878
               theta_stop: 0.032 
                    nperm: 10000 
                     p_ks: 0.67 
        ci_ks_bounds_left: 0.66 
       ci_ks_bounds_right: 0.68 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.61 
                  p_joint: 0.96 
     ci_joint_bounds_left: 0.96 
    ci_joint_bounds_right: 0.97 

Current progress: 71 percent done.
ZNF883
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.199832e-03	ci left: 9.800565e-01	ci right 9.852569e-01	k: 9828	n:10000
Cons ci ratio: 2.091580e-02	ci left: 7.701294e-01	ci right 7.865082e-01	k: 7784	n:10000
KS ci ratio: 1.981480e-02	ci left: 7.884733e-01	ci right 8.043536e-01	k: 7965	n:10000
ZNF883   10000 perm   2 sec   (6530 perm/sec)   p_kst 7.965000e-01   p_cons 7.784000e-01   p_joint 9.828000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF883.3_1144_10000_0.7965_0.7784_0.9828.png
                gene_name: ZNF883
               theta_stop: 0.021 
                    nperm: 10000 
                     p_ks: 0.80 
        ci_ks_bounds_left: 0.79 
       ci_ks_bounds_right: 0.80 
                   p_cons: 0.78 
      ci_cons_bounds_left: 0.77 
     ci_cons_bounds_right: 0.79 
                  p_joint: 0.98 
     ci_joint_bounds_left: 0.98 
    ci_joint_bounds_right: 0.99 

Current progress: 72 percent done.
ZNF93
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 5.768586e-02	ci left: 3.066941e-01	ci right 3.250132e-01	k: 3158	n:10000
Cons ci ratio: 8.511018e-02	ci left: 1.674999e-01	ci right 1.824899e-01	k: 1749	n:10000
KS ci ratio: 6.794962e-02	ci left: 2.411415e-01	ci right 2.582045e-01	k: 2496	n:10000
ZNF93   10000 perm   2 sec   (6531 perm/sec)   p_kst 2.496000e-01   p_cons 1.749000e-01   p_joint 3.158000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF93.3_1879_10000_0.2496_0.1749_0.3158.png
                gene_name: ZNF93
               theta_stop: 0.085 
                    nperm: 10000 
                     p_ks: 0.25 
        ci_ks_bounds_left: 0.24 
       ci_ks_bounds_right: 0.26 
                   p_cons: 0.17 
      ci_cons_bounds_left: 0.17 
     ci_cons_bounds_right: 0.18 
                  p_joint: 0.32 
     ci_joint_bounds_left: 0.31 
    ci_joint_bounds_right: 0.33 

Current progress: 74 percent done.
ZP3
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.851453e-02	ci left: 3.853009e-01	ci right 4.045604e-01	k: 3949	n:10000
Cons ci ratio: 2.635322e-02	ci left: 6.795209e-01	ci right 6.977691e-01	k: 6887	n:10000
KS ci ratio: 8.409273e-02	ci left: 1.709408e-01	ci right 1.860470e-01	k: 1784	n:10000
ZP3   10000 perm   2 sec   (6435 perm/sec)   p_kst 1.784000e-01   p_cons 6.887000e-01   p_joint 3.949000e-01

Outputting figure to mutsig2_images.part000000000200/ZP3.3_1307_10000_0.1784_0.6887_0.3949.png
                gene_name: ZP3
               theta_stop: 0.084 
                    nperm: 10000 
                     p_ks: 0.18 
        ci_ks_bounds_left: 0.17 
       ci_ks_bounds_right: 0.19 
                   p_cons: 0.69 
      ci_cons_bounds_left: 0.68 
     ci_cons_bounds_right: 0.70 
                  p_joint: 0.39 
     ci_joint_bounds_left: 0.39 
    ci_joint_bounds_right: 0.40 

Current progress: 75 percent done.
ZPBP
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 6.927536e-03	ci left: 9.662559e-01	ci right 9.730668e-01	k: 9698	n:10000
Cons ci ratio: 6.372771e-02	ci left: 2.656711e-01	ci right 2.832604e-01	k: 2744	n:10000
KS ci ratio: 3.526734e-02	ci left: 5.427904e-01	ci right 5.623789e-01	k: 5526	n:10000
ZPBP   10000 perm   2 sec   (6264 perm/sec)   p_kst 5.526000e-01   p_cons 2.744000e-01   p_joint 9.698000e-01

Outputting figure to mutsig2_images.part000000000200/ZPBP.3_1088_10000_0.5526_0.2744_0.9698.png
                gene_name: ZPBP
               theta_stop: 0.064 
                    nperm: 10000 
                     p_ks: 0.55 
        ci_ks_bounds_left: 0.54 
       ci_ks_bounds_right: 0.56 
                   p_cons: 0.27 
      ci_cons_bounds_left: 0.27 
     ci_cons_bounds_right: 0.28 
                  p_joint: 0.97 
     ci_joint_bounds_left: 0.97 
    ci_joint_bounds_right: 0.97 

Current progress: 77 percent done.
ZSCAN18
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 7.283413e-02	ci left: 2.163531e-01	ci right 2.328076e-01	k: 2245	n:10000
Cons ci ratio: 6.948898e-02	ci left: 2.329402e-01	ci right 2.498108e-01	k: 2413	n:10000
KS ci ratio: 6.427613e-02	ci left: 2.623061e-01	ci right 2.798274e-01	k: 2710	n:10000
ZSCAN18   10000 perm   2 sec   (5920 perm/sec)   p_kst 2.710000e-01   p_cons 2.413000e-01   p_joint 2.245000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN18.3_1729_10000_0.271_0.2413_0.2245.png
                gene_name: ZSCAN18
               theta_stop: 0.073 
                    nperm: 10000 
                     p_ks: 0.27 
        ci_ks_bounds_left: 0.26 
       ci_ks_bounds_right: 0.28 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.23 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.22 
     ci_joint_bounds_left: 0.22 
    ci_joint_bounds_right: 0.23 

Current progress: 78 percent done.
ZSCAN5A
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.501136e-02	ci left: 5.463971e-01	ci right 5.659702e-01	k: 5562	n:10000
Cons ci ratio: 1.432059e-02	ci left: 8.758224e-01	ci right 8.885540e-01	k: 8823	n:10000
KS ci ratio: 6.103901e-02	ci left: 2.830009e-01	ci right 3.009204e-01	k: 2919	n:10000
ZSCAN5A   10000 perm   2 sec   (6284 perm/sec)   p_kst 2.919000e-01   p_cons 8.823000e-01   p_joint 5.562000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN5A.3_1507_10000_0.2919_0.8823_0.5562.png
                gene_name: ZSCAN5A
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.88 
      ci_cons_bounds_left: 0.88 
     ci_cons_bounds_right: 0.89 
                  p_joint: 0.56 
     ci_joint_bounds_left: 0.55 
    ci_joint_bounds_right: 0.57 

Current progress: 80 percent done.
ZSCAN5B
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.286347e-02	ci left: 5.774761e-01	ci right 5.968731e-01	k: 5872	n:10000
Cons ci ratio: 6.019367e-02	ci left: 2.887481e-01	ci right 3.067699e-01	k: 2977	n:10000
KS ci ratio: 3.706525e-02	ci left: 5.180585e-01	ci right 5.377252e-01	k: 5279	n:10000
ZSCAN5B   10000 perm   2 sec   (6085 perm/sec)   p_kst 5.279000e-01   p_cons 2.977000e-01   p_joint 5.872000e-01

Outputting figure to mutsig2_images.part000000000200/ZSCAN5B.3_1504_10000_0.5279_0.2977_0.5872.png
                gene_name: ZSCAN5B
               theta_stop: 0.060 
                    nperm: 10000 
                     p_ks: 0.53 
        ci_ks_bounds_left: 0.52 
       ci_ks_bounds_right: 0.54 
                   p_cons: 0.30 
      ci_cons_bounds_left: 0.29 
     ci_cons_bounds_right: 0.31 
                  p_joint: 0.59 
     ci_joint_bounds_left: 0.58 
    ci_joint_bounds_right: 0.60 

Current progress: 81 percent done.
ZSWIM1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 2.678422e-02	ci left: 6.724682e-01	ci right 6.908258e-01	k: 6817	n:10000
KS ci ratio: 2.463247e-02	ci left: 7.079580e-01	ci right 7.257155e-01	k: 7169	n:10000
ZSWIM1   10000 perm   2 sec   (6196 perm/sec)   p_kst 7.169000e-01   p_cons 6.817000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZSWIM1.3_1462_10000_0.7169_0.6817_1.png
                gene_name: ZSWIM1
               theta_stop: 0.027 
                    nperm: 10000 
                     p_ks: 0.72 
        ci_ks_bounds_left: 0.71 
       ci_ks_bounds_right: 0.73 
                   p_cons: 0.68 
      ci_cons_bounds_left: 0.67 
     ci_cons_bounds_right: 0.69 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 83 percent done.
ZSWIM2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.734874e-02	ci left: 5.142557e-01	ci right 5.339302e-01	k: 5241	n:10000
Cons ci ratio: 6.886859e-02	ci left: 2.362004e-01	ci right 2.531486e-01	k: 2446	n:10000
KS ci ratio: 5.672566e-02	ci left: 3.139366e-01	ci right 3.323665e-01	k: 3231	n:10000
ZSWIM2   10000 perm   2 sec   (6067 perm/sec)   p_kst 3.231000e-01   p_cons 2.446000e-01   p_joint 5.241000e-01

Outputting figure to mutsig2_images.part000000000200/ZSWIM2.3_1938_10000_0.3231_0.2446_0.5241.png
                gene_name: ZSWIM2
               theta_stop: 0.069 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.24 
      ci_cons_bounds_left: 0.24 
     ci_cons_bounds_right: 0.25 
                  p_joint: 0.52 
     ci_joint_bounds_left: 0.51 
    ci_joint_bounds_right: 0.53 

Current progress: 84 percent done.
ZWINT
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 8.673992e-03	ci left: 9.490847e-01	ci right 9.574486e-01	k: 9534	n:10000
KS ci ratio: 2.936549e-02	ci left: 6.310052e-01	ci right 6.499129e-01	k: 6405	n:10000
ZWINT   10000 perm   2 sec   (6465 perm/sec)   p_kst 6.405000e-01   p_cons 9.534000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZWINT.3_866_10000_0.6405_0.9534_1.png
                gene_name: ZWINT
               theta_stop: 0.029 
                    nperm: 10000 
                     p_ks: 0.64 
        ci_ks_bounds_left: 0.63 
       ci_ks_bounds_right: 0.65 
                   p_cons: 0.95 
      ci_cons_bounds_left: 0.95 
     ci_cons_bounds_right: 0.96 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 86 percent done.
ZXDC
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.996185e-02	ci left: 4.804561e-01	ci right 5.001496e-01	k: 4903	n:10000
Cons ci ratio: 6.135045e-02	ci left: 2.809205e-01	ci right 2.988021e-01	k: 2898	n:10000
KS ci ratio: 6.114250e-02	ci left: 2.823074e-01	ci right 3.002143e-01	k: 2912	n:10000
ZXDC   10000 perm   2 sec   (5798 perm/sec)   p_kst 2.912000e-01   p_cons 2.898000e-01   p_joint 4.903000e-01

Outputting figure to mutsig2_images.part000000000200/ZXDC.3_2623_10000_0.2912_0.2898_0.4903.png
                gene_name: ZXDC
               theta_stop: 0.061 
                    nperm: 10000 
                     p_ks: 0.29 
        ci_ks_bounds_left: 0.28 
       ci_ks_bounds_right: 0.30 
                   p_cons: 0.29 
      ci_cons_bounds_left: 0.28 
     ci_cons_bounds_right: 0.30 
                  p_joint: 0.49 
     ci_joint_bounds_left: 0.48 
    ci_joint_bounds_right: 0.50 

Current progress: 87 percent done.
ZNF92
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 4.541090e-02	ci left: 4.171780e-01	ci right 4.366646e-01	k: 4269	n:10000
Cons ci ratio: 5.697292e-02	ci left: 3.120513e-01	ci right 3.304529e-01	k: 3212	n:10000
KS ci ratio: 4.449503e-02	ci left: 4.271481e-01	ci right 4.466887e-01	k: 4369	n:10000
ZNF92   10000 perm   2 sec   (6638 perm/sec)   p_kst 4.369000e-01   p_cons 3.212000e-01   p_joint 4.269000e-01

Outputting figure to mutsig2_images.part000000000200/ZNF92.2_1777_10000_0.4369_0.3212_0.4269.png
                gene_name: ZNF92
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.44 
        ci_ks_bounds_left: 0.43 
       ci_ks_bounds_right: 0.45 
                   p_cons: 0.32 
      ci_cons_bounds_left: 0.31 
     ci_cons_bounds_right: 0.33 
                  p_joint: 0.43 
     ci_joint_bounds_left: 0.42 
    ci_joint_bounds_right: 0.44 

Current progress: 88 percent done.
ZNHIT2
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.994303e-02	ci left: 7.863438e-01	ci right 8.022844e-01	k: 7944	n:10000
KS ci ratio: 1.564030e-01	ci left: 5.446081e-02	ci right 6.379808e-02	k: 590	n:10000
ZNHIT2   10000 perm   1 sec   (6768 perm/sec)   p_kst 5.900000e-02   p_cons 7.944000e-01   p_joint 1

Joint ci ratio: 7.337469e-03	ci left: 9.310338e-01	ci right 9.379392e-01	k: 18691	n:20000
Cons ci ratio: 1.395908e-02	ci left: 7.920645e-01	ci right 8.032488e-01	k: 15954	n:20000
KS ci ratio: 1.105463e-01	ci left: 5.587115e-02	ci right 6.245774e-02	k: 1182	n:20000
ZNHIT2   20000 perm   3 sec   (5942 perm/sec)   p_kst 5.910000e-02   p_cons 7.977000e-01   p_joint 9.345500e-01

Joint ci ratio: 1.003779e-02	ci left: 8.313905e-01	ci right 8.398111e-01	k: 25069	n:30000
Cons ci ratio: 1.143630e-02	ci left: 7.919998e-01	ci right 8.011427e-01	k: 23898	n:30000
KS ci ratio: 9.019386e-02	ci left: 5.655559e-02	ci right 6.193016e-02	k: 1776	n:30000
ZNHIT2   30000 perm   5 sec   (5630 perm/sec)   p_kst 5.920000e-02   p_cons 7.966000e-01   p_joint 8.356333e-01

Outputting figure to mutsig2_images.part000000000200/ZNHIT2.2_1216_30000_0.0592_0.7966_0.83563.png
                gene_name: ZNHIT2
               theta_stop: 0.090 
                    nperm: 30000 
                     p_ks: 0.059 
        ci_ks_bounds_left: 0.057 
       ci_ks_bounds_right: 0.062 
                   p_cons: 0.80 
      ci_cons_bounds_left: 0.79 
     ci_cons_bounds_right: 0.80 
                  p_joint: 0.84 
     ci_joint_bounds_left: 0.83 
    ci_joint_bounds_right: 0.84 

Current progress: 90 percent done.
ZNRF4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.558774e-02	ci left: 6.921210e-01	ci right 7.101617e-01	k: 7012	n:10000
Cons ci ratio: 3.960380e-02	ci left: 4.849534e-01	ci right 5.046496e-01	k: 4948	n:10000
KS ci ratio: 8.649139e-02	ci left: 1.629794e-01	ci right 1.778132e-01	k: 1703	n:10000
ZNRF4   10000 perm   1 sec   (6902 perm/sec)   p_kst 1.703000e-01   p_cons 4.948000e-01   p_joint 7.012000e-01

Outputting figure to mutsig2_images.part000000000200/ZNRF4.2_1294_10000_0.1703_0.4948_0.7012.png
                gene_name: ZNRF4
               theta_stop: 0.086 
                    nperm: 10000 
                     p_ks: 0.17 
        ci_ks_bounds_left: 0.16 
       ci_ks_bounds_right: 0.18 
                   p_cons: 0.49 
      ci_cons_bounds_left: 0.48 
     ci_cons_bounds_right: 0.50 
                  p_joint: 0.70 
     ci_joint_bounds_left: 0.69 
    ci_joint_bounds_right: 0.71 

Current progress: 91 percent done.
ZRANB1
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.374555e-02	ci left: 5.645385e-01	ci right 5.840182e-01	k: 5743	n:10000
KS ci ratio: 3.981027e-02	ci left: 4.823548e-01	ci right 5.020497e-01	k: 4922	n:10000
ZRANB1   10000 perm   2 sec   (6382 perm/sec)   p_kst 4.922000e-01   p_cons 5.743000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZRANB1.2_2163_10000_0.4922_0.5743_1.png
                gene_name: ZRANB1
               theta_stop: 0.040 
                    nperm: 10000 
                     p_ks: 0.49 
        ci_ks_bounds_left: 0.48 
       ci_ks_bounds_right: 0.50 
                   p_cons: 0.57 
      ci_cons_bounds_left: 0.56 
     ci_cons_bounds_right: 0.58 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 93 percent done.
ZSCAN16
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.130118e-02	ci left: 6.009618e-01	ci right 6.201737e-01	k: 6106	n:10000
KS ci ratio: 6.700260e-03	ci left: 9.682593e-01	ci right 9.748622e-01	k: 9717	n:10000
ZSCAN16   10000 perm   1 sec   (6794 perm/sec)   p_kst 9.717000e-01   p_cons 6.106000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZSCAN16.2_1059_10000_0.9717_0.6106_1.png
                gene_name: ZSCAN16
               theta_stop: 0.031 
                    nperm: 10000 
                     p_ks: 0.97 
        ci_ks_bounds_left: 0.97 
       ci_ks_bounds_right: 0.97 
                   p_cons: 0.61 
      ci_cons_bounds_left: 0.60 
     ci_cons_bounds_right: 0.62 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 94 percent done.
ZSCAN21
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 3.949308e-02	ci left: 4.863528e-01	ci right 5.060494e-01	k: 4962	n:10000
KS ci ratio: 9.408775e-02	ci left: 1.408974e-01	ci right 1.549084e-01	k: 1478	n:10000
ZSCAN21   10000 perm   1 sec   (6887 perm/sec)   p_kst 1.478000e-01   p_cons 4.962000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZSCAN21.2_1434_10000_0.1478_0.4962_1.png
                gene_name: ZSCAN21
               theta_stop: 0.094 
                    nperm: 10000 
                     p_ks: 0.15 
        ci_ks_bounds_left: 0.14 
       ci_ks_bounds_right: 0.15 
                   p_cons: 0.50 
      ci_cons_bounds_left: 0.49 
     ci_cons_bounds_right: 0.51 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 96 percent done.
ZSWIM4
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 2.674103e-02	ci left: 6.731734e-01	ci right 6.915203e-01	k: 6824	n:10000
Cons ci ratio: 1.557477e-02	ci left: 8.568193e-01	ci right 8.703681e-01	k: 8637	n:10000
KS ci ratio: 5.672566e-02	ci left: 3.139366e-01	ci right 3.323665e-01	k: 3231	n:10000
ZSWIM4   10000 perm   2 sec   (5856 perm/sec)   p_kst 3.231000e-01   p_cons 8.637000e-01   p_joint 6.824000e-01

Outputting figure to mutsig2_images.part000000000200/ZSWIM4.2_3022_10000_0.3231_0.8637_0.6824.png
                gene_name: ZSWIM4
               theta_stop: 0.057 
                    nperm: 10000 
                     p_ks: 0.32 
        ci_ks_bounds_left: 0.31 
       ci_ks_bounds_right: 0.33 
                   p_cons: 0.86 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 0.68 
     ci_joint_bounds_left: 0.67 
    ci_joint_bounds_right: 0.69 

Current progress: 97 percent done.
ZSWIM5
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 1.105409e-01	ci left: 1.054923e-01	ci right 1.179349e-01	k: 1116	n:10000
Cons ci ratio: 1.595841e-01	ci left: 5.234307e-02	ci right 6.151717e-02	k: 568	n:10000
KS ci ratio: 3.432174e-02	ci left: 5.562179e-01	ci right 5.757437e-01	k: 5660	n:10000
ZSWIM5   10000 perm   2 sec   (5628 perm/sec)   p_kst 5.660000e-01   p_cons 5.680000e-02   p_joint 1.116000e-01

Joint ci ratio: 8.520455e-02	ci left: 9.160790e-02	ci right 9.981008e-02	k: 1913	n:20000
Cons ci ratio: 1.122195e-01	ci left: 5.426451e-02	ci right 6.076488e-02	k: 1149	n:20000
KS ci ratio: 2.408099e-02	ci left: 5.629537e-01	ci right 5.767260e-01	k: 11397	n:20000
ZSWIM5   20000 perm   4 sec   (5021 perm/sec)   p_kst 5.698500e-01   p_cons 5.745000e-02   p_joint 9.565000e-02

Joint ci ratio: 4.576499e-02	ci left: 1.919835e-01	ci right 2.010087e-01	k: 5894	n:30000
Cons ci ratio: 9.082027e-02	ci left: 5.580527e-02	ci right 6.114731e-02	k: 1753	n:30000
KS ci ratio: 1.963773e-02	ci left: 5.648419e-01	ci right 5.760777e-01	k: 17114	n:30000
ZSWIM5   30000 perm   6 sec   (4786 perm/sec)   p_kst 5.704667e-01   p_cons 5.843333e-02   p_joint 1.964667e-01

Outputting figure to mutsig2_images.part000000000200/ZSWIM5.2_3614_30000_0.57047_0.058433_0.19647.png
                gene_name: ZSWIM5
               theta_stop: 0.091 
                    nperm: 30000 
                     p_ks: 0.57 
        ci_ks_bounds_left: 0.56 
       ci_ks_bounds_right: 0.58 
                   p_cons: 0.058 
      ci_cons_bounds_left: 0.056 
     ci_cons_bounds_right: 0.061 
                  p_joint: 0.20 
     ci_joint_bounds_left: 0.19 
    ci_joint_bounds_right: 0.20 

Current progress: 99 percent done.
ZW10
Processing conservation and coverage...
Processing mutations... 
Generating list of throwable mutations...
Starting permutations...
Joint ci ratio: 3.919216e-04	ci left: 9.996312e-01	ci right 1	k: 10000	n:10000
Cons ci ratio: 1.532928e-02	ci left: 8.605959e-01	ci right 8.739894e-01	k: 8674	n:10000
KS ci ratio: 4.277403e-02	ci left: 4.466014e-01	ci right 4.662240e-01	k: 4564	n:10000
ZW10   10000 perm   2 sec   (6076 perm/sec)   p_kst 4.564000e-01   p_cons 8.674000e-01   p_joint 1

Outputting figure to mutsig2_images.part000000000200/ZW10.2_2404_10000_0.4564_0.8674_1.png
                gene_name: ZW10
               theta_stop: 0.043 
                    nperm: 10000 
                     p_ks: 0.46 
        ci_ks_bounds_left: 0.45 
       ci_ks_bounds_right: 0.47 
                   p_cons: 0.87 
      ci_cons_bounds_left: 0.86 
     ci_cons_bounds_right: 0.87 
                  p_joint: 1 
     ci_joint_bounds_left: 1.00 
    ci_joint_bounds_right: 1 

Current progress: 100 percent done.
Finished call_mutsig_cluster
Remaining analyses will be handled during gather.
analyze_mutation_data finished.
libdir: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/
LD_LIBRARY_PATH is .:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/runtime/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/bin/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/os/glnxa64:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/server:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64/client:/broad/software/nonfree/Linux/redhat_5_x86_64/pkgs/matlab_2009a/sys/java/jre/glnxa64/jre/lib/amd64
MCR_CACHE_ROOT is  /xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/180055/iteration1/scatter.0000000200
mFile: fh_MutSigRun
executing: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/fh_MutSigRun /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/MutSigRun.165.3896/ -whichjob 200 -i COADREAD -maf /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.maf -ppr /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.mutation_preprocessing_report.txt -cov /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.coverage.mat -cat /xchip/cga/gdac-prod/tcga-gdac/jobResults/ProcessCoverageForMutSig/COADREAD/1780923/0.ProcessCoverageForMutSig.Finished/COADREAD.mutcategs.txt -pat /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutSigPreprocess/COADREAD/1780853/0.MutSigPreprocess.Finished/COADREAD.patients.txt -genes /xchip/cga1/lawrence/capture/RefSeq_exons_hg18_june2010.genelist.txt -b hg18 -genesets /xchip/cga1/annotation/db/genesets/gsea_canonical_pathway_plus_HMT67.txt -cosmic /xchip/cga1/annotation/db/cosmic/CosmicMutantExport_v48_260710_p25.tsv -refseq /xchip/cga1/annotation/db/ucsc/hg18/R.mat -bd /xchip/cga1/annotation/db/ucsc/hg18 -p /xchip/cga1/reference/mutsig_params/MutSig2.0.params.txt -jobcount 200


PS:

Read file <scatter.err> for stderr output of this job.

*** Scatter stdandard err:

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Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:51:00 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19691
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:50:56 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19693
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:51:11 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19695
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:51:16 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19698
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:51:24 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19701
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:52:43 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19703
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:52:46 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19705
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:52:55 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19712
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:53:06 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19714
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:53:25 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19720
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:53:29 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19722
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:53:31 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19726
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:53:49 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19732
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:53:51 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19735
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:54:00 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19737
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:54:35 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19739
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:54:35 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19740
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:55:00 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19742
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:55:04 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19743
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:55:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19745
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:56:01 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19750
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:56:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19753
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:56:34 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19754
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:56:45 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19757
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:58:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19759
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:58:36 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19762
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:58:49 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19764
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:59:00 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19766
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Fri Oct  5 23:59:56 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19770
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:00:25 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19771
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:01:19 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19772
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:01:53 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19774
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:02:03 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19775
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:02:16 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19777
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:02:10 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19778
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:02:17 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19780
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:02:49 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19784
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:02:47 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19786
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:03:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19787
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:03:20 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19789
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:03:50 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19792
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:04:00 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19794
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:04:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19797
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:04:50 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19799
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:04:38 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19800
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:04:39 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19801
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:04:52 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19803
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:04:59 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19806
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:05:04 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19809
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:05:06 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19811
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:05:17 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19815
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:05:29 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19817
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:05:51 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19819
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:05:54 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19820
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:06:16 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19822
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:06:33 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19824
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:06:41 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19826
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:07:00 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19828
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:07:11 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19831
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:07:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19832
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:07:19 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19834
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:08:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19835
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:08:03 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19837
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:08:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19839
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:08:23 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19841
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:08:57 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19842
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:09:05 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19844
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:09:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19846
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:09:19 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19848
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:09:20 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19849
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:10:01 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19851
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:10:02 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19852
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:10:08 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19855
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:10:13 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19857
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:10:27 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19859
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:10:45 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19860
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:10:51 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19863
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:11:08 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19864
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:11:36 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19866
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:12:37 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19867
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:12:50 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19870
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:13:11 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19871
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:13:22 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19872
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:13:29 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19874
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:13:41 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19875
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:13:46 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19877
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:13:53 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19879
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:13:56 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19880
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:15:22 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19884
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:15:31 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19885
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:15:29 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19889
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:15:28 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19890
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:15:51 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19892
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:15:48 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19893
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:15:49 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19895
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:16:08 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19896
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:16:57 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19899
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:17:17 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19901
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:17:13 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19902
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:17:17 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19905
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:17:36 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19907
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:17:47 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19910
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:17:50 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19911
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:18:06 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19914
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:18:05 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19915
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:18:07 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19916
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:18:05 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19918
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:18:57 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19919
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:19:30 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19921
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:19:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19922
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:20:41 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19924
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:20:48 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19928
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:20:59 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19932
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:21:16 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19934
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:21:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19936
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:21:27 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19938
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:21:25 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19940
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:21:31 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19942
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:21:59 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19947
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:22:03 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19950
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:22:05 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19952
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:22:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19958
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:22:23 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19960
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:22:30 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19963
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:22:31 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19965
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:23:08 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19970
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:23:31 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19973
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:23:59 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19975
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:24:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19976
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:24:35 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19977
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:24:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19978
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:24:42 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19981
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:24:54 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19982
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:25:04 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19984
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:25:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19985
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:25:31 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19986
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:25:39 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19991
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:26:01 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19993
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:26:15 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19994
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:26:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19997
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:26:50 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 19999
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:26:51 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20000
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:26:58 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20005
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:26:58 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20006
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:27:07 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20008
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:27:17 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20009
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:27:30 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20011
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:27:40 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20015
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:27:39 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20018
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:27:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20019
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:27:41 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20021
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:27:53 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20022
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:27:53 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20023
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:28:32 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20027
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:29:04 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20028
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:29:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20029
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:29:28 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20030
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:29:28 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20032
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:29:49 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20036
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:29:51 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20037
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:30:03 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20039
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:30:17 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20042
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:30:14 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20044
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:30:20 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20048
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:30:34 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20051
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:31:04 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20056
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:31:12 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20057
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:31:20 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20058
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:31:19 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20063
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:31:23 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20066
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:32:03 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20068
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:32:20 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20071
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:32:21 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20075
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:32:34 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20077
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:32:38 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20078
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:32:46 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20079
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:32:52 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20081
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:33:01 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20083
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:33:20 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20084
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:33:22 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20086
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:33:19 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20088
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:33:19 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20091
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:33:29 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20093
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:33:50 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20094
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:34:24 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20096
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:34:47 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20097
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:35:22 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20100
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:35:24 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20101
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:35:31 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20102
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:35:31 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20104
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:35:51 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20105
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:36:07 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20108
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:36:20 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20109
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:36:26 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20110
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:36:26 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20112
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:36:34 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20113
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:36:44 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20116
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:36:43 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20117
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:36:55 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20119
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 00:37:11 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20120
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.
*** Scatter retry log:
==> scatter.0000000001.tries <==
1
==> scatter.0000000002.tries <==
1
==> scatter.0000000003.tries <==
1
==> scatter.0000000004.tries <==
1
==> scatter.0000000005.tries <==
1
==> scatter.0000000006.tries <==
1
==> scatter.0000000007.tries <==
1
==> scatter.0000000008.tries <==
1
==> scatter.0000000009.tries <==
1
==> scatter.0000000010.tries <==
1
==> scatter.0000000011.tries <==
1
==> scatter.0000000012.tries <==
1
==> scatter.0000000013.tries <==
1
==> scatter.0000000014.tries <==
1
==> scatter.0000000015.tries <==
1
==> scatter.0000000016.tries <==
1
==> scatter.0000000017.tries <==
1
==> scatter.0000000018.tries <==
1
==> scatter.0000000019.tries <==
1
==> scatter.0000000020.tries <==
1
==> scatter.0000000021.tries <==
1
==> scatter.0000000022.tries <==
1
==> scatter.0000000023.tries <==
1
==> scatter.0000000024.tries <==
1
==> scatter.0000000025.tries <==
1
==> scatter.0000000026.tries <==
1
==> scatter.0000000027.tries <==
1
==> scatter.0000000028.tries <==
1
==> scatter.0000000029.tries <==
1
==> scatter.0000000030.tries <==
1
==> scatter.0000000031.tries <==
1
==> scatter.0000000032.tries <==
1
==> scatter.0000000033.tries <==
1
==> scatter.0000000034.tries <==
1
==> scatter.0000000035.tries <==
1
==> scatter.0000000036.tries <==
1
==> scatter.0000000037.tries <==
1
==> scatter.0000000038.tries <==
1
==> scatter.0000000039.tries <==
1
==> scatter.0000000040.tries <==
1
==> scatter.0000000041.tries <==
1
==> scatter.0000000042.tries <==
1
==> scatter.0000000043.tries <==
1
==> scatter.0000000044.tries <==
1
==> scatter.0000000045.tries <==
1
==> scatter.0000000046.tries <==
1
==> scatter.0000000047.tries <==
1
==> scatter.0000000048.tries <==
1
==> scatter.0000000049.tries <==
1
==> scatter.0000000050.tries <==
1
==> scatter.0000000051.tries <==
1
==> scatter.0000000052.tries <==
1
==> scatter.0000000053.tries <==
1
==> scatter.0000000054.tries <==
1
==> scatter.0000000055.tries <==
1
==> scatter.0000000056.tries <==
1
==> scatter.0000000057.tries <==
1
==> scatter.0000000058.tries <==
1
==> scatter.0000000059.tries <==
1
==> scatter.0000000060.tries <==
1
==> scatter.0000000061.tries <==
1
==> scatter.0000000062.tries <==
1
==> scatter.0000000063.tries <==
1
==> scatter.0000000064.tries <==
1
==> scatter.0000000065.tries <==
1
==> scatter.0000000066.tries <==
1
==> scatter.0000000067.tries <==
1
==> scatter.0000000068.tries <==
1
==> scatter.0000000069.tries <==
1
==> scatter.0000000070.tries <==
1
==> scatter.0000000071.tries <==
1
==> scatter.0000000072.tries <==
1
==> scatter.0000000073.tries <==
1
==> scatter.0000000074.tries <==
1
==> scatter.0000000075.tries <==
1
==> scatter.0000000076.tries <==
1
==> scatter.0000000077.tries <==
1
==> scatter.0000000078.tries <==
1
==> scatter.0000000079.tries <==
1
==> scatter.0000000080.tries <==
1
==> scatter.0000000081.tries <==
1
==> scatter.0000000082.tries <==
1
==> scatter.0000000083.tries <==
1
==> scatter.0000000084.tries <==
1
==> scatter.0000000085.tries <==
1
==> scatter.0000000086.tries <==
1
==> scatter.0000000087.tries <==
1
==> scatter.0000000088.tries <==
1
==> scatter.0000000089.tries <==
1
==> scatter.0000000090.tries <==
1
==> scatter.0000000091.tries <==
1
==> scatter.0000000092.tries <==
1
==> scatter.0000000093.tries <==
1
==> scatter.0000000094.tries <==
1
==> scatter.0000000095.tries <==
1
==> scatter.0000000096.tries <==
1
==> scatter.0000000097.tries <==
1
==> scatter.0000000098.tries <==
1
==> scatter.0000000099.tries <==
1
==> scatter.0000000100.tries <==
1
==> scatter.0000000101.tries <==
1
==> scatter.0000000102.tries <==
1
==> scatter.0000000103.tries <==
1
==> scatter.0000000104.tries <==
1
==> scatter.0000000105.tries <==
1
==> scatter.0000000106.tries <==
1
==> scatter.0000000107.tries <==
1
==> scatter.0000000108.tries <==
1
==> scatter.0000000109.tries <==
1
==> scatter.0000000110.tries <==
1
==> scatter.0000000111.tries <==
1
==> scatter.0000000112.tries <==
1
==> scatter.0000000113.tries <==
1
==> scatter.0000000114.tries <==
1
==> scatter.0000000115.tries <==
1
==> scatter.0000000116.tries <==
1
==> scatter.0000000117.tries <==
1
==> scatter.0000000118.tries <==
1
==> scatter.0000000119.tries <==
1
==> scatter.0000000120.tries <==
1
==> scatter.0000000121.tries <==
1
==> scatter.0000000122.tries <==
1
==> scatter.0000000123.tries <==
1
==> scatter.0000000124.tries <==
1
==> scatter.0000000125.tries <==
1
==> scatter.0000000126.tries <==
1
==> scatter.0000000127.tries <==
1
==> scatter.0000000128.tries <==
1
==> scatter.0000000129.tries <==
1
==> scatter.0000000130.tries <==
1
==> scatter.0000000131.tries <==
1
==> scatter.0000000132.tries <==
1
==> scatter.0000000133.tries <==
1
==> scatter.0000000134.tries <==
1
==> scatter.0000000135.tries <==
1
==> scatter.0000000136.tries <==
1
==> scatter.0000000137.tries <==
1
==> scatter.0000000138.tries <==
1
==> scatter.0000000139.tries <==
1
==> scatter.0000000140.tries <==
1
==> scatter.0000000141.tries <==
1
==> scatter.0000000142.tries <==
1
==> scatter.0000000143.tries <==
1
==> scatter.0000000144.tries <==
1
==> scatter.0000000145.tries <==
1
==> scatter.0000000146.tries <==
1
==> scatter.0000000147.tries <==
1
==> scatter.0000000148.tries <==
1
==> scatter.0000000149.tries <==
1
==> scatter.0000000150.tries <==
1
==> scatter.0000000151.tries <==
1
==> scatter.0000000152.tries <==
1
==> scatter.0000000153.tries <==
1
==> scatter.0000000154.tries <==
1
==> scatter.0000000155.tries <==
1
==> scatter.0000000156.tries <==
1
==> scatter.0000000157.tries <==
1
==> scatter.0000000158.tries <==
1
==> scatter.0000000159.tries <==
1
==> scatter.0000000160.tries <==
1
==> scatter.0000000161.tries <==
1
==> scatter.0000000162.tries <==
1
==> scatter.0000000163.tries <==
1
==> scatter.0000000164.tries <==
1
==> scatter.0000000165.tries <==
1
==> scatter.0000000166.tries <==
1
==> scatter.0000000167.tries <==
1
==> scatter.0000000168.tries <==
1
==> scatter.0000000169.tries <==
1
==> scatter.0000000170.tries <==
1
==> scatter.0000000171.tries <==
1
==> scatter.0000000172.tries <==
1
==> scatter.0000000173.tries <==
1
==> scatter.0000000174.tries <==
1
==> scatter.0000000175.tries <==
1
==> scatter.0000000176.tries <==
1
==> scatter.0000000177.tries <==
1
==> scatter.0000000178.tries <==
1
==> scatter.0000000179.tries <==
1
==> scatter.0000000180.tries <==
1
==> scatter.0000000181.tries <==
1
==> scatter.0000000182.tries <==
1
==> scatter.0000000183.tries <==
1
==> scatter.0000000184.tries <==
1
==> scatter.0000000185.tries <==
1
==> scatter.0000000186.tries <==
1
==> scatter.0000000187.tries <==
1
==> scatter.0000000188.tries <==
1
==> scatter.0000000189.tries <==
1
==> scatter.0000000190.tries <==
1
==> scatter.0000000191.tries <==
1
==> scatter.0000000192.tries <==
1
==> scatter.0000000193.tries <==
1
==> scatter.0000000194.tries <==
1
==> scatter.0000000195.tries <==
1
==> scatter.0000000196.tries <==
1
==> scatter.0000000197.tries <==
1
==> scatter.0000000198.tries <==
1
==> scatter.0000000199.tries <==
1
==> scatter.0000000200.tries <==
1


PS:

Read file <scatter-gather.err.txt> for stderr output of this job.

*** Scatter Gather stdandard err:

Xvnc Free Edition 4.1.2
Copyright (C) 2002-2005 RealVNC Ltd.
See http://www.realvnc.com for information on VNC.
Underlying X server release 70101000, The X.Org Foundation


Sat Oct  6 06:27:19 2012
 vncext:      VNC extension running!
 vncext:      Listening for VNC connections on port 20122
 vncext:      created VNC server for screen 0
FreeFontPath: FPE "unix/:7100" refcount is 2, should be 1; fixing.
ls: iteration1/sg-next-iteration.txt: No such file or directory


PS:

Read file <iterator.err.txt> for stderr output of this job.

